# hmmscan :: search sequence(s) against a profile database
# HMMER 3.2.1 (June 2018); http://hmmer.org/
# Copyright (C) 2018 Howard Hughes Medical Institute.
# Freely distributed under the BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:             /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Phaeomoniella_chlamydospora-UCRPA7V1.0/GCA_001006345.1_UCRPA7V1.0_protein.faa
# target HMM database:             /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# output directed to file:         /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Phaeomoniella_chlamydospora-UCRPA7V1.0/GCA_001006345.1_UCRPA7V1.0_protein.PFam32-A
# per-seq hits tabular output:     /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Phaeomoniella_chlamydospora-UCRPA7V1.0/GCA_001006345.1_UCRPA7V1.0_protein.PFam32-A.tblout
# number of worker threads:        20
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       KKY13027.1  [L=101]
Description: putative rhodanese domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-14   53.7   0.0      3e-14   53.4   0.0    1.0  1  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   1.7e-18     3e-14      18     106 ..       7      94 ..       2      95 .. 0.88

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 1.7e-18
   Rhodanese  18 DvRppeeYek.ghIpgAvnvskdtlsrakkseapllelpeellel....gidnkktvvvycdgggraaaaaallkklGyknvsvldGGfkawke 106
                 D R+p e +k ghIpgA+n+        + +++++  + ee++++       +++++v+yc+ g r++aaaal+  +Gy+ v  + G++ +w e
  KKY13027.1   7 DSREPGELKKsGHIPGAINI------PITSNPDSFHITQEEFEDKfgfpRPGKDQELVFYCKAGVRSRAAAALASDAGYTSVGEYPGSWVDWEE 94 
                 899999**************......667777777777777777787777889*************9999999999**888***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.34s 00:00:00.85 Elapsed: 00:00:00.57
# Mc/sec: 530.62
//
Query:       KKY13105.1  [L=348]
Description: putative arabinogalactan endo-beta-galactosidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-92  310.5   0.0    1.4e-92  310.4   0.0    1.0  1  Glyco_hydro_53  Glycosyl hydrolase family 53


Domain annotation for each model (and alignments):
>> Glyco_hydro_53  Glycosyl hydrolase family 53
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.4   0.0   7.5e-97   1.4e-92       1     338 [.      22     343 ..      22     345 .. 0.95

  Alignments for each domain:
  == domain 1  score: 310.4 bits;  conditional E-value: 7.5e-97
  Glyco_hydro_53   1 ikGaDisslveleeagvsfknengktqdllkilkdagvnsvRlrvwndpadenkngelegvndldkaikiakrakaaGmkvlldfHYSDtwaDPa 95 
                     +kGaDissl+ le+ g sf++++g+t+ l +il+ +gvns+R+r+w+   +          ++ld+++++ kr+ aaGm v+ld+H SDtwaDP+
      KKY13105.1  22 YKGADISSLIVLENEGKSFQTTSGTTEALESILAASGVNSIRQRIWVADDS---------TYNLDYNLELSKRVVAAGMGVYLDLHLSDTWADPS 107
                     79*********************************************7766.........89********************************* PP

  Glyco_hydro_53  96 kQkkPkaWasldteelkkavydyTkdvlkklkeagvlpelVqvGNEinsgllwsegkkenweklakllnsgikavke..vstnikvviHlanged 188
                     +Q   k W+   + +l+++vy+yT +v+++ ++ag+ pe+V++GNE+++gllw+ g+++ + ++a ll+s+++++k+   +t++k++iHl+ng+d
      KKY13105.1 108 HQA--KSWDDSTIGTLTNTVYEYTLSVCNSYASAGIAPEIVSIGNEVRAGLLWPLGDTDSYYNIASLLHSAAWGIKDsdLTTTPKILIHLDNGWD 200
                     **8..79**********************************************************************88899************* PP

  Glyco_hydro_53 189 aaskkaifkklskag....vdfDvigvsYYpfwss..tleklksnlkdlasrygkevivvEtsypytlddgdetgnlapkks...elksipatsq 274
                     +a++ ++++++  +g    +dfD+igvsYYpf+++  tl++l+++lk+las+ygke++v+Et++p +        + +p +s   +++sip++++
      KKY13105.1 201 EATQLWWYETVLGEGplstTDFDMIGVSYYPFYNDeaTLASLQYSLKELASTYGKELVVAETNWPES--------CPDPAYSfpsDTTSIPFSAA 287
                     **************88888**************998999************************9988........44444444457899****** PP

  Glyco_hydro_53 275 gqatmlrdlielvkavtdskglGvfYWEpawvskgdkalkwkkgssvenqalfdrngkalpslk 338
                     gq+t++++++++v+a   + g+G++YWEpa + ++        gss++++ l+d+ngka + + 
      KKY13105.1 288 GQSTWITEVANIVEAT--DGGVGLYYWEPAFLGNA------ALGSSCADNLLVDSNGKAREGIA 343
                     ***************6..9*************988......69**************9988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 2167.07
//
Query:       KKY13230.1  [L=220]
Description: putative synaptobrevin-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-27   93.5   0.2    1.6e-26   92.1   0.0    1.7  2  Longin         Regulated-SNARE-like domain
    1.5e-22   79.2   0.1    2.3e-22   78.6   0.1    1.2  1  Synaptobrevin  Synaptobrevin


Domain annotation for each model (and alignments):
>> Longin  Regulated-SNARE-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.35   3.2e+03      31      42 ..       8      19 ..       4      27 .. 0.80
   2 !   92.1   0.0   1.8e-30   1.6e-26       1      84 []      42     143 ..      42     143 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.35
      Longin 31 dgltylviades 42
                 g+ y ++a+++
  KKY13230.1  8 PGILYACVAHAT 19
                489999999876 PP

  == domain 2  score: 92.1 bits;  conditional E-value: 1.8e-30
      Longin   1 aklilkkishsspqkltythdsytfhyla...................edgltylviadesyprrlaFafLeeikreFlakygtaktadaadlrpyafa 80 
                 a+lil+ki+hs+pqkltythd++++h ++                   +++l+yl++++++++rr++FafL ++k++Fl+++++++t  +++l++y+ a
  KKY13230.1  42 ASLILPKINHSTPQKLTYTHDRLFVHLISdspsgssssnndpssepssSSSLVYLCVSQAELGRRIPFAFLLDLKKKFLSAHPSSST-NFQSLPAYGSA 139
                 799**************************************999999888*********************************8666.999******** PP

      Longin  81 eFdt 84 
                 +F+t
  KKY13230.1 140 SFNT 143
                 **95 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.1   2.5e-26   2.3e-22       3      64 ..     159     220 .]     158     220 .] 0.97

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 2.5e-26
                    XHHHHHHHHHHCCCCHHCCHHHHCHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS
  Synaptobrevin   3 dklakikaevdevkdimkeNidkvlergekldeLvdktenLqssaqqFkkqarklkrkmwwk 64 
                    d la++++e+d vkdim+eNi++vlerge++d+Lvdkt++L  sa++F+ ++r l+rkmww+
     KKY13230.1 159 DALANARKEIDTVKDIMTENIERVLERGERIDLLVDKTDRLGGSARDFRIRSRGLRRKMWWN 220
                    678999*******************************************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 1371.38
//
Query:       KKY13238.1  [L=631]
Description: hypothetical protein UCRPC4_g06983 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0035   17.2   0.0     0.0035   17.2   0.0    2.4  3  Mt_ATP-synt_D   ATP synthase D chain, mitochondrial (ATP5H)
  ------ inclusion threshold ------
       0.24   11.5   2.3       0.26   11.4   0.2    2.2  2  DnaJ            DnaJ domain
        5.5    7.4  16.7         17    5.9   8.0    2.9  2  CENP-B_dimeris  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> Mt_ATP-synt_D  ATP synthase D chain, mitochondrial (ATP5H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.61   3.6e+03      95     116 ..      86     107 ..      61     128 .. 0.52
   2 !   17.2   0.0   5.8e-07    0.0035      21      59 ..     208     248 ..     200     255 .. 0.84
   3 ?   -4.9   2.1         3   1.8e+04      82     112 ..     588     618 ..     583     625 .. 0.51

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.61
                    HHHHCHHHHHHHHHHHHHHHHH CS
  Mt_ATP-synt_D  95 vkkeikefkeeskkrieeleke 116
                    +  +i    ++++++ie+ +  
     KKY13238.1  86 DFDKILGLENQYENEIEKKKAV 107
                    3333333333333333333333 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 5.8e-07
                    GGHHHHHHHHHHHHHHH..HHHHHS-SS-----HHHHHHHS CS
  Mt_ATP-synt_D  21 nqkaqfkalkaksdeyl..rrvaklPeelpkIdWayYkknv 59 
                    ++ + ++al++ +++++  +r +++Pe++  IdW+yY++  
     KKY13238.1 208 SNSDAIAALQSMNEKIKelNRTNHYPEDVFVIDWEYYQSVF 248
                    56678999999999996337*****************9865 PP

  == domain 3  score: -4.9 bits;  conditional E-value: 3
                    -TTTTHHHHHHHHHHHHCHHHHHHHHHHHHH CS
  Mt_ATP-synt_D  82 dkyteevdaeekevkkeikefkeeskkriee 112
                    d  t+e d+  +e ++++++  ++ +kr ++
     KKY13238.1 588 DDRTSEEDEDDDEEAAAAAAAATAKEKRRKK 618
                    5555555555555555444444444444444 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   4.4e-05      0.26       4      52 ..      89     140 ..      86     148 .. 0.75
   2 ?   -2.7   0.1       1.2     7e+03      15      33 ..     533     551 ..     531     556 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.4e-05
                 HHHTSSTT.....G-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHH CS
        DnaJ   4 eiLgvskd.....asedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyev 52 
                 +iLg++++      +++ + +a+r+l +  HP  n ++++a ++Fk   +A e 
  KKY13238.1  89 KILGLENQyeneiEKKKAVLAAFRELGKLTHPVTN-RHNKAGKAFKIC-KAAEH 140
                 688998884443334667999**************.777799999855.55454 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHSTTTS CS
        DnaJ  15 deIkkaYrklalkyHPDkn 33 
                 de+   Yrk+a +  P + 
  KKY13238.1 533 DEVLDYYRKKAGQQRPARR 551
                 6777889999999888765 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   1.4    0.0033        20      21      51 ..      45      75 ..      28     116 .. 0.71
   2 ?    5.9   8.0    0.0028        17       8      35 ..     574     601 ..     568     611 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0033
  CENP-B_dimeris 21 eeeeedeededeeddedddevpvpsfgeama 51
                         d   e ++dde +dev  p+  +  a
      KKY13238.1 45 LRGPGDGHSEVDDDDESEDEVGEPTQEQIAA 75
                    4445677888899999999999987655444 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0028
  CENP-B_dimeris   8 agedsesesdeeeeeeeedeededeedd 35 
                     +g+ s  esd   e++   eeded++++
      KKY13238.1 574 SGDSSSDESDVSSEDDRTSEEDEDDDEE 601
                     5555555666655555555555554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1359  (0.075799); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.47
# Mc/sec: 4066.98
//
Query:       KKY13239.1  [L=758]
Description: putative mrna cleavage and polyadenylation specificity factor complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-71  238.8   1.4    2.7e-70  236.6   1.6    2.0  3  DUF3453   Domain of unknown function (DUF3453)


Domain annotation for each model (and alignments):
>> DUF3453  Domain of unknown function (DUF3453)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.6   1.6   1.5e-74   2.7e-70       1     224 [.      91     310 ..      91     312 .. 0.95
   2 ?   -3.3   0.0      0.32   5.8e+03      98     123 ..     466     491 ..     462     498 .. 0.73
   3 ?   -2.1   0.0      0.14   2.5e+03     129     191 ..     668     725 ..     644     744 .. 0.60

  Alignments for each domain:
  == domain 1  score: 236.6 bits;  conditional E-value: 1.5e-74
     DUF3453   1 dpavvkkvIqaaasiYplvlrliiknsedsetWekmtalKdeIlrlvdssdndgvrlaaiKFiervilvqtrg.vadrneskeqseislsqvpdnhpil 98 
                 d+av+k++Iq++asiY +v+r++i+n+e+s +We+mta+K++Ilr++d+ + +g+r+++iKF+++v++vqt g ++d++   e++e+s+s vp+nhp+l
  KKY13239.1  91 DHAVIKSAIQTVASIYGFVFRRMISNPEESGAWENMTAIKSNILRRMDTLP-TGIRICCIKFVQKVVQVQTAGiISDPRR-PERNETSISLVPRNHPVL 187
                 689************************************************.*********************7777444.567*************** PP

     DUF3453  99 sprkLeaEAkrlLdrlLkvlqeasiltsslviatlnslasiakqRpqfankilqallsfnplkk...pnlpptlsklqvksvektlkvlllnllknsse 194
                 s+r+LeaEA++lLdrlL+v++++ +  + l+++tln++a+++k+R ++anki++++l++nplk+   p++p   +k++ ks+e+t++++l n+ k +++
  KKY13239.1 188 SLRNLEAEASGLLDRLLDVFHQD-SSDAILINSTLNCVAVLVKSRASVANKIISVILNYNPLKLantPMTPA--TKVSLKSMERTTRAVLRNINKSNPN 283
                 ********************986.77777********************************99998888888..************************* PP

     DUF3453 195 hplqskiqqlleklgallqeiaaviaeetr 224
                  pl++ki ++l    +l+q+++av+a+ t+
  KKY13239.1 284 GPLANKIDAYLV---RLQQSRNAVFADTTS 310
                 ************...**********98876 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.32
     DUF3453  98 lsprkLeaEAkrlLdrlLkvlqeasi 123
                 ls ++    Ak++ dr+L+++ +as 
  KKY13239.1 466 LSEQQVSIAAKQTVDRVLSMISTAST 491
                 66677777889999999998876644 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.14
     DUF3453 129 viatlnslasiakqRpqfankilqallsfnplkkpnlpptlsklqvksvektlkvlllnllkn 191
                 v+ ++     ++ +Rp + +  l+a++++  ++      ++ + +vk + +  k +l+  l n
  KKY13239.1 668 VTMCIMAFQYLIMMRPPVREACLDAVEKLWREN-----GEARQGAVKVLTRWRKDVLQAGLNN 725
                 444555555566666666666666666665421.....1235555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.47
# Mc/sec: 4812.67
//
Query:       KKY13297.1  [L=398]
Description: putative gpi anchored [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-07   30.7   0.0    3.3e-07   29.9   0.0    1.4  1  Dioxygenase_C  Dioxygenase
  ------ inclusion threshold ------
       0.15   12.5   0.0       0.39   11.2   0.0    1.7  1  DUF4406        Domain of unknown function (DUF4406)


Domain annotation for each model (and alignments):
>> Dioxygenase_C  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   3.7e-11   3.3e-07       3     100 ..     138     238 ..     136     251 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 3.7e-11
                    -S--EET--EEESEEE---S--TT--EEEEEEEEE-.TTSSB-TT-EEEEE---TTS--TTS-TTS-SS..TTTTE...EEEE--TTSEEEEEEE- CS
  Dioxygenase_C   3 gPlyveeapededlarledkgeeegerlvlsGrvld.eaGkplagalvelWhanaeGrYshkkeeheap..elnlr...griltdeeGryrirtik 92 
                    gP+yv  ++  +++++ +   +  g+ l+l+ + +d +  ++++   +++W+ana+G Ys  + + +     +n +   g  ltd +G  +++ti 
     KKY13297.1 138 GPYYVV-GEYMRSNVKESL--YCDGVDLFLEVQYVDiNTCEGVPTLAIDVWNANATGVYSGISTSGNYAagGYNSTylrGIQLTDFDGVVSFETIF 230
                    888888.677777777666..899*********99944689*******************8877654432477765555999************** PP

                    ---EE--T CS
  Dioxygenase_C  93 PapYpipn 100
                    P+ Y+ + 
     KKY13297.1 231 PGHYEGRA 238
                    ****8776 PP

>> DUF4406  Domain of unknown function (DUF4406)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.4e-05      0.39       6      65 ..     106     163 ..     103     175 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.4e-05
     DUF4406   6 pitGlpeynkeafeeaaeklkeaGytvlnpavllpaglsweaymriclalllkcdaivmL 65 
                 ++tG   y +  f+++a+ ++++   vl p +   +     +ymr ++++ l cd++ ++
  KKY13297.1 106 NMTG--SYSYDMFTAEADVFSANTSCVLAPEITDGPYYVVGEYMRSNVKESLYCDGVDLF 163
                 5999..67779********************9967778899***************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.50
# Mc/sec: 2401.29
//
Query:       KKY13298.1  [L=1185]
Description: putative pyruvate carboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-82  274.8   0.1    6.6e-82  274.1   0.1    1.4  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    3.3e-69  232.6   0.0    5.5e-69  231.9   0.0    1.4  1  PYC_OADA         Conserved carboxylase domain
      2e-39  134.5   0.0    4.1e-39  133.5   0.0    1.6  1  Biotin_carb_N    Biotin carboxylase, N-terminal domain
    1.6e-31  108.6   0.0    4.5e-31  107.1   0.0    1.9  1  Biotin_carb_C    Biotin carboxylase C-terminal domain
    2.3e-25   89.6   0.0    6.1e-25   88.3   0.0    1.7  1  HMGL-like        HMGL-like
    9.6e-19   67.0   5.7    1.1e-18   66.8   3.6    2.2  2  Biotin_lipoyl    Biotin-requiring enzyme
    7.5e-10   38.7   0.0    1.4e-09   37.8   0.0    1.4  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    1.5e-09   37.5   1.0    2.1e-05   24.3   0.3    2.9  2  Biotin_lipoyl_2  Biotin-lipoyl like
      2e-07   30.7   0.0    4.4e-07   29.6   0.0    1.5  1  ATP-grasp        ATP-grasp domain
    4.4e-06   26.8   0.0      9e-06   25.8   0.0    1.5  1  ATP-grasp_3      ATP-grasp domain
      5e-05   23.0   0.0    0.00019   21.1   0.0    1.9  1  RimK             RimK-like ATP-grasp domain
    0.00074   20.2   0.4       0.13   13.0   0.2    3.1  3  HlyD_3           HlyD family secretion protein
      0.002   17.4   0.2      0.065   12.4   0.2    2.3  2  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
      0.003   17.2   0.0     0.0097   15.5   0.0    1.9  2  ATP-grasp_4      ATP-grasp domain
  ------ inclusion threshold ------
      0.036   13.8   0.0      0.069   12.9   0.0    1.5  1  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr
      0.075   13.0   0.1        0.2   11.6   0.1    1.7  1  DUF2118          Uncharacterized protein conserved in archaea
      0.088   12.7   1.4        0.4   10.6   0.4    2.5  3  GCV_H            Glycine cleavage H-protein
       0.15   11.5   0.2       0.25   10.8   0.2    1.3  1  NQRA             Na(+)-translocating NADH-quinone reductase s
       0.33   10.9   1.6        1.5    8.8   0.8    2.2  2  RnfC_N           RnfC Barrel sandwich hybrid domain


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.1   0.1     7e-85   6.6e-82       1     210 [.     151     359 ..     151     360 .. 0.99

  Alignments for each domain:
  == domain 1  score: 274.1 bits;  conditional E-value: 7e-85
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  Dk+sa++++ k +vpvvp++++pv + ee+ a+++++g+P+iikaafg+GG+Gmrv+r++e l++++++a++eak+afgn +v+ve++l++pk+iEv+
   KKY13298.1 151 DKVSARNLAIKCKVPVVPGTDGPVAKYEEVKAFTDKYGFPIIIKAAFGGGGRGMRVVRDQESLKDSFERATSEAKSAFGNGTVFVERFLDRPKHIEVQ 248
                  9************************************************************************************************* PP

                  EEEETTS-EEEEEEEEECCECTCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--HH CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslqlrtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlv 196
                  +l D++gnv++++er++s+q+r+qkv+e AP++ L +e+r+++ ++avk++++v++++agt efl+d+ +++yy+iE+N+R++ve++++e++TG+d+v
   KKY13298.1 249 LLGDNHGNVVHLFERDCSVQRRHQKVVELAPAKDLPRETRDKILADAVKLAKSVNYRNAGTAEFLVDQ-QNRYYFIEINPRIQVEHTITEEITGIDIV 345
                  *******************************************************************8.9**************************** PP

                  HHHHHHHTT--GCG CS
  CPSase_L_D2 197 keaakialgekLee 210
                  +++++ia+g++Le+
   KKY13298.1 346 AAQIQIAAGASLEQ 359
                  ************87 PP

>> PYC_OADA  Conserved carboxylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.9   0.0   5.8e-72   5.5e-69       1     197 [.     867    1065 ..     867    1066 .. 0.99

  Alignments for each domain:
  == domain 1  score: 231.9 bits;  conditional E-value: 5.8e-72
                  HHCCT--CCHHHHHHHHHHHTT-GGGHHHHHHHHHHHHHHTT----STTHHHHHHHHHHHHHHH........TS.TTSS--HHHHHHHTTSS---SS CS
    PYC_OADA    1 VykheiPGGqltnlkeqakeqglldkfeevlkeyaevnkllGdivkVTPsSkvvgdlAvfnvlnklteedvleegrykdipdsvvdllkGelGkppg 97  
                  Vy+heiPGGqltnl +qa ++gl+ ++ + +k+y+++n+llGdivkVTP+SkvvgdlA+f+v+nkl+ + v+e++ ++d+p sv ++++G +G+p+g
  KKY13298.1  867 VYEHEIPGGQLTNLIFQASQLGLGTQWAQTKKAYEQANDLLGDIVKVTPTSKVVGDLAQFMVSNKLDYAGVIEKAGELDFPGSVLEFFEGLMGQPYG 963 
                  9************************************************************************************************ PP

                  ---HHHHHHHHT.-----S-GGGG---.-HHHHHHHTTTTSS..SHHHHHHHHHSHHHHHHHHHHHHHHHHHH..CTTTS......-SEEEEEETTE CS
    PYC_OADA   98 gfpeelvkkvlkgeepitsrpadslepedleklrkeleekak..teedvlsyalypkvaekflkfreeygdvsvlptkvffeglkvgeevevevegg 192 
                  gfpe+l++k+l++++++++rp+  l+p d+e+ +kel+ek++  te d+ sy++ypkv+e++ kf ++ygd+svlptk f+++ ++gee++ve+e+g
  KKY13298.1  964 GFPEPLRSKALRNRRKMDKRPGLYLDPIDFEAKKKELQEKYGkiTETDLASYVMYPKVFEDYRKFIAQYGDLSVLPTKYFLNKPEIGEEFHVELEKG 1060
                  *****************************************778***************************************************** PP

                  EEE.E CS
    PYC_OADA  193 kyliv 197 
                  k+li 
  KKY13298.1 1061 KVLIL 1065
                  *9975 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.5   0.0   4.3e-42   4.1e-39       2     110 .]      35     146 ..      34     146 .. 0.94

  Alignments for each domain:
  == domain 1  score: 133.5 bits;  conditional E-value: 4.3e-42
                    --EEEE---HHHHHHHHHHHHHTT-EEEEEEEGGGTTSHHHHHSSEEEEEE...SSTTCCGGG-HHHHHHHHHHTT-SEEE--SSTTTT-HHHHHH CS
  Biotin_carb_N   2 ikkvlianrGeiAvriiravrelgietvavyseedanslhvreadeavelg...pasasesYlniekivkaakesgadavhpGyGflsEnaefaea 94 
                    ++k+++anrGei +ri+r+++el+++tva+ys ed+ s+h ++adea+ +g   + ++  +Yl i++ivk+ak++g++ +hpGyGflsEn+efa++
     KKY13298.1  35 LQKIMVANRGEIPIRIFRTAHELSLQTVAIYSYEDRLSMHRQKADEAYVIGkrgEYTPVGAYLAIDEIVKIAKTHGVQMIHPGYGFLSENEEFARK 130
                    689***********************************************9432334679************************************ PP

                    HHHTT-EESSS-HHHH CS
  Biotin_carb_N  95 veeagivfiGPsaeal 110
                    ve+agivf+GP+++++
     KKY13298.1 131 VEDAGIVFVGPTPDTI 146
                    ************9876 PP

>> Biotin_carb_C  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   0.0   4.8e-34   4.5e-31       1     107 [.     375     482 ..     375     483 .. 0.98

  Alignments for each domain:
  == domain 1  score: 107.1 bits;  conditional E-value: 4.8e-34
                    EEEEESEETTTTTEE--CE-SEEE---STTEEEEE---.TT-EE-TTS-SEEEEEEEEESSHHHHHHHHHHHHHT-EEESS-BSHHHHHHHHH-HH CS
  Biotin_carb_C   1 eaRinaEdpeknflpssGkvtelelpegpgvRvdsgve.egsevspyyDsllaKlivhgetreealarlrraLaelrieGvktnieflrailedee 95 
                    ++Ri++Edp+k+f+p++Gk++ ++  +g+gvR+d g   +g+ ++pyyDs+l K  +hg+t e a +++ raL e+ri+G+ktni+fl+++l +++
     KKY13298.1 375 QCRITTEDPSKGFSPDTGKIEVYRSAGGNGVRLDGGNGfAGAVITPYYDSMLVKCTCHGSTYEIARRKILRALVEFRIRGIKTNIPFLASLLTHPT 470
                    79********************************99877********************************************************* PP

                    HHHT---TTTCC CS
  Biotin_carb_C  96 fakgeldtkfle 107
                    f++g++ t+f++
     KKY13298.1 471 FVEGTCWTTFID 482
                    **********98 PP

>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.0   6.5e-28   6.1e-25       4     262 ..     574     844 ..     572     845 .. 0.86

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 6.5e-28
                 EEE-TTTHHHHTS.SS---HHHHHHHHHHHHHHT-S..EE--........TSGGGT.THHHHHHHS---TT-B...........--EE-SSHHHHHHHH CS
   HMGL-like   4 ivdttLRDGeqal.kaalsveeklaiakaLdeagvd..eiEv........gfpaaseddfevvraiakavkka......r...ilalvrarekdikaav 82 
                 i+dtt RD++q+l ++++++ + ++iak+ ++a  +  ++E+         ++++ ed+++++r++ k v++       r    +a+  + ++ i  + 
  KKY13298.1 574 IMDTTWRDAHQSLlATRVRTVDLVNIAKQTSHALSNawALECwggatfdvAMRFLYEDPWDRLRKLRKLVPNIpfqmllRganGVAYSSLPDNAIYHFC 672
                 89**********999************997776443226788888888889*******************99866665515558889999999999999 PP

                 H....TT-SEEEEEEES-HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-E....TTT-...BTTTBS--HHHHHHHHHHHHHHT-SEEEEEETTS---H CS
   HMGL-like  83 ealkgagakrvhvfiatselhlkaklkkdreevakkaeeavkaarslgkd....vels...ledasrtdleflaevveaaeeaGatriniaDtvGvltP 174
                   +k++g+++++vf+a ++              +++ e  ++a++++g      v++s   l+  ++ +le+ + +v++++++G  ++ i+D+ Gvl+P
  KKY13298.1 673 VHAKKNGVDIFRVFDALND--------------IDQLEVGMRAVQKAGGVvegtVCYSgdmLNPKKKYNLEYYLGLVDKIVKIGTHTLGIKDMAGVLKP 757
                 99*****************..............5555555555555555533333333111344567899***************************** PP

                 HHHHHHHHHHHHHS-.GGGEEEEEB-TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT-B----HHHHHHHHH CS
   HMGL-like 175 neaaelisalkervkdkvilsvHcHndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealgvdtgldlqklrsiaa 262
                 ++a  li  ++++++  ++++vH+H+  G++va ++a ++aGad vd++  +l++ +  +++ ++ a le+  +d+gl+ + +r++ +
  KKY13298.1 758 KAATLLIGSIRKKYP-DLPIHVHTHDSAGTGVASMVACAKAGADAVDAATDSLSGMTSQPSIGAILASLEGSDLDPGLNNHAVRALDQ 844
                 ***************.9****************************************************************9998765 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.3   2.2e+03      44      63 ..    1081    1100 ..    1079    1105 .. 0.77
   2 !   66.8   3.6   1.2e-21   1.1e-18       2      73 .]    1117    1183 ..    1116    1183 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.3
                     EEEBSSSEEEEEESSTTTEE CS
  Biotin_lipoyl   44 eieapkaGvvkeilvkeGdt 63  
                     e+ ++++G v ++ v++ ++
     KKY13298.1 1081 EVFYEMNGEVRQVTVDDQKA 1100
                     778899********996554 PP

  == domain 2  score: 66.8 bits;  conditional E-value: 1.2e-21
                     EEEESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl    2 eiksPmiGesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73  
                     ++ +Pm G++ve     + vk+G++Vk+g+++a+++amKmem i+ap++G v ++lvkeGd+v+ +dl++ki
     KKY13298.1 1117 QVGAPMSGVVVE-----IRVKEGGEVKKGDPVAVLSAMKMEMIISAPHSGHVGSLLVKEGDSVDGSDLICKI 1183
                     7999*******9.....*****************************************************98 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   1.5e-12   1.4e-09      26     174 ..     178     327 ..     166     328 .. 0.87

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.5e-12
                      HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT......-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS- CS
  Dala_Dala_lig_C  26 ellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafky......dekvlvEeai.egreievavlgneklevsevgeivvkkgfyd 112
                      e +++ +++ g+p+++K+a  G   G+  v+ +e lk+ +e+a +       + +v+vE+++ + + iev +lg+++ +v ++ e+  +    +
       KKY13298.1 178 EEVKAFTDKYGFPIIIKAAFGGGGRGMRVVRDQESLKDSFERATSEaksafgNGTVFVERFLdRPKHIEVQLLGDNHGNVVHLFERDCSV--QR 269
                      56788899*******************************9999876222222468*******999*********9999999999887664..34 PP

                      HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEES CS
  Dala_Dala_lig_C 113 yeakysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNt 174
                       ++k     ++l    +l++e+++ki + a+k  k ++ r  +   f+++++++ ++ E+N+
       KKY13298.1 270 RHQKV----VELAPAKDLPRETRDKILADAVKLAKSVNYRNAGTAEFLVDQQNRYYFIEINP 327
                      45555....68888899********************************************6 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.3   2.2e-08   2.1e-05       3      34 ..    1116    1147 ..    1114    1153 .. 0.89
   2 !   10.6   0.0    0.0004      0.38       5      25 ..    1155    1175 ..    1151    1183 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.2e-08
  Biotin_lipoyl_2    3 vsIaapvsGrVaqlnVkdGqrVkaGdvLaelD 34  
                        ++ ap sG+V++++Vk+G +Vk+Gd  a+l 
       KKY13298.1 1116 SQVGAPMSGVVVEIRVKEGGEVKKGDPVAVLS 1147
                       688899********************999886 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0004
  Biotin_lipoyl_2    5 IaapvsGrVaqlnVkdGqrVk 25  
                       I+ap sG V +l+Vk+G+ V 
       KKY13298.1 1155 ISAPHSGHVGSLLVKEGDSVD 1175
                       99****************996 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   4.6e-10   4.4e-07      14     160 ..     174     329 ..     166     333 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 4.6e-10
                 ECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE----SEEEEEEEEEETTC-.EEE--EEEEEEETT CS
   ATP-grasp  14 veskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvpfekElsvlvvrsaeGe.tafypvvetvqedg 103
                 v++ ee+++++++ g+p+++K +  g  G+G  vvr++e+l++ +e +        ++++v vE f +  k + v    + +G+ ++ ++    vq++ 
  KKY13298.1 174 VAKYEEVKAFTDKYGFPIIIK-AAFGGGGRGMRVVRDQESLKDSFERAtseaksafGNGTVFVERFLDRPKHIEVQLLGDNHGNvVHLFERDCSVQRRH 271
                 567889***************.788889**************999999999999999************999999999999999567889889999998 PP

                 EEEEEEECEE.-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS- CS
   ATP-grasp 104 ilrlsvapae.vsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapRp 160
                   ++ +apa+ ++++   k+ + a k+++++++    + E+ v ++++ ++ E+ pR 
  KKY13298.1 272 QKVVELAPAKdLPRETRDKILADAVKLAKSVNYRNAGTAEFLVDQQNRYYFIEINPRI 329
                 8888888875388889999*9***************9***99998888********95 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   9.6e-09     9e-06      31     159 ..     188     330 ..     151     332 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 9.6e-09
                  SSSEEEEESS-------B--SS--TTE...................EEEE---.SEEEEEEEEE.SSSEEEEEEEEEE.EET....TEEEEEEES--- CS
  ATP-grasp_3  31 ekklvvKprdGaggesvrvveekeeaeaaieeve............lvqefie.GkplSvsllsdgekvlvlavnrql.iekaekefvyaGnvtpiet 114
                    ++++K + G+gg ++rvv+++e+++ ++e  +             v +f++  k++ v+ll+d++ ++v  + r   ++++++++v      + + 
   KKY13298.1 188 GFPIIIKAAFGGGGRGMRVVRDQESLKDSFERATseaksafgngtvFVERFLDrPKHIEVQLLGDNHGNVVHLFERDCsVQRRHQKVVELAPAKDLPR 285
                  5589***********************99998889999*******98899996379*********998888777776526777777898999999999 PP

                  -HHHHHHHHHHHHHTTSTT--EEEEEEEEESS..SEEEEEEESS-- CS
  ATP-grasp_3 115 elkeevvelaeevvekleglaGyvGvDlvlkd.eepyviEvNPRlt 159
                  e ++++ + a ++ +++ + +     ++++ + +  y+iE+NPR++
   KKY13298.1 286 ETRDKILADAVKLAKSV-NYRNAGTAEFLVDQqNRYYFIEINPRIQ 330
                  9****************.777777778887776999********98 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0     2e-07   0.00019      23     182 ..     173     346 ..     150     352 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2e-07
                 EESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEEEE-SHHHHHHHHHH.........GGG--EEEEE--SS-SEEEEEEEET.TEEEEEEEEE--SSS CS
        RimK  23 lardeedaekliekiklrfPvvvKsvegsqGikvvlakkeqklkqvlea.........lkeailvqeyieeaenediRvlvvd.devvaalrrvskeGd 111
                  + ++e+++++ +k+  +fP+++K  +g  G ++ + +++++lk+ +e           + +++v  +++  +  ++ +l  + ++vv  ++r +    
  KKY13298.1 173 PVAKYEEVKAFTDKY--GFPIIIKAAFGGGGRGMRVVRDQESLKDSFERatseaksafGNGTVFVERFLDRPKHIEVQLLGDNhGNVVHLFERDCSV-- 267
                 4568999********..6**************************9998755443444334445*********9999999976535788888887655.. PP

                 ----TTTT-EEEE----HHHH.HH...HHHHHHHCT-SEEEEE..EEEETTEEEEEEEESS--SHH..HHHHHT--HHH CS
        RimK 112 FRsnlhrGgvaeklqlseeek.el...AikaakamelvvaGvD..llrakrgllvlEvnsspglek..iektlgidiak 182
                  R   +    a   +l  e + ++   A+k ak ++   aG    l+++++ ++++E+n   ++e+   e  +gidi +
  KKY13298.1 268 QRRHQKVVELAPAKDLPRETRdKIladAVKLAKSVNYRNAGTAefLVDQQNRYYFIEINPRIQVEHtiTEEITGIDIVA 346
                 2333333333333444444331233558*************988999*************9998862257788999854 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       3.3   3.1e+03      53      96 ..    1049    1098 ..    1042    1109 .. 0.67
   2 !   13.0   0.2   0.00013      0.13       2      31 ..    1118    1147 ..    1117    1155 .. 0.88
   3 ?    3.3   0.0      0.14   1.3e+02       2      31 ..    1155    1184 ..    1154    1185 .] 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 3.3
      HlyD_3   53 kgqkvtlkldqgsdytlkgkierisptvdaktg...aykv.....evslenp 96  
                  +g + +++l++g  ++l  k+  i+p ++++++    y++     +v+++++
  KKY13298.1 1049 IGEEFHVELEKG--KVLILKLLAIGPLSEQTGQrevFYEMngevrQVTVDDQ 1098
                  678888888755..59999*****9977765553324444444455555555 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00013
      HlyD_3    2 lrApvdGvvvelnveegevvqagdelleii 31  
                  + Ap +Gvvve+ v+eg  v +gd+++ + 
  KKY13298.1 1118 VGAPMSGVVVEIRVKEGGEVKKGDPVAVLS 1147
                  569***********99999*******9876 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.14
      HlyD_3    2 lrApvdGvvvelnveegevvqagdelleii 31  
                  + Ap +G+v +l v+eg+ v   d + +i+
  KKY13298.1 1155 ISAPHSGHVGSLLVKEGDSVDGSDLICKIV 1184
                  78******************9999998886 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.2   6.9e-05     0.065     106     140 ..    1113    1147 ..    1073    1151 .. 0.73
   2 ?    2.9   0.0     0.056        53     106     139 ..    1150    1183 ..    1147    1185 .] 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.9e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  106 qktvtvkapisGvVteknvreGqyvqpgdtlftia 140 
                    + +v ap+sGvV+e +v eG  v++gd+++ ++
  KKY13298.1 1113 GDSSQVGAPMSGVVVEIRVKEGGEVKKGDPVAVLS 1147
                  34678889999999999999999999998887665 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.056
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  106 qktvtvkapisGvVteknvreGqyvqpgdtlfti 139 
                  + ++ ++ap sG V ++ v eG+ v+ +d + +i
  KKY13298.1 1150 KMEMIISAPHSGHVGSLLVKEGDSVDGSDLICKI 1183
                  567889*******************999888877 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     1e-05    0.0097       2     152 ..     188     329 ..     187     337 .. 0.84
   2 ?   -2.3   0.0         3   2.8e+03      43     109 ..    1030    1094 ..    1018    1110 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1e-05
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieG.eEfavdayfdeeGepvilnilkkefaseedvsdrl 98 
                   +P++iK + g + +G+++++++e +k+ +++  +e   ak+     +  ++++ vE +++  + + v ++ d++G+  ++++++++ + ++  ++++
   KKY13298.1 188 GFPIIIKAAFGGGGRGMRVVRDQESLKDSFERATSE---AKS-----AFGNGTVFVERFLDRpKHIEVQLLGDNHGN--VVHLFERDCSVQRRHQKVV 275
                  58**************************99998876...344.....45567789*****96267899999999997..5678999999999999999 PP

  ATP-grasp_4  99 yvts.akvieetlealeellkevnallglknfpvHiElrvsedgkiipiEvnplr 152
                   + + +++ +et +++     ++++ ++ +n  + +E+ v+++++ + iE+np+ 
   KKY13298.1 276 ELAPaKDLPRETRDKILADAVKLAKSVNYRNAGT-AEFLVDQQNRYYFIEINPRI 329
                  77772579*******9777778888999999776.9*****************75 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3
  ATP-grasp_4   43 eeykeevveeesflvEeyieGeEfavdayfdeeGepvilnilkkefaseed.vsdrlyvtsakvieet 109 
                   ++y +  v  +++ + +   GeEf v++   e+G+ +il++l    +se+   +++ y +  +v + t
   KKY13298.1 1030 AQYGDLSVLPTKYFLNKPEIGEEFHVEL---EKGKVLILKLLAIGPLSEQTgQREVFYEMNGEVRQVT 1094
                   5566666666666666666788888885...7788888888877777766634444455555555544 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.3e-05     0.069       2      91 ..     151     241 ..     150     275 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.3e-05
                 BHHHHHHHHHHTT--B-..-EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---S CS
      GARS_A   2 sKsfakdllkkagipta..eyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleG 91 
                 +K  a++l  k+++p    +   + ++ee+k++ ++ ++++ ++Ka+   +g+g+ v++++e   +  +   ++ k    + +v +E +l+ 
  KKY13298.1 151 DKVSARNLAIKCKVPVVpgTDGPVAKYEEVKAFTDKYGFPI-IIKAAFGGGGRGMRVVRDQESLKDSFERATSEAKSAFGNGTVFVERFLDR 241
                 67788899999999987445556899***************.****************9999888888888877665555999******974 PP

>> DUF2118  Uncharacterized protein conserved in archaea (DUF2118)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00022       0.2      87     130 ..    1121    1163 ..    1113    1175 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00022
     DUF2118   87 pvegvkvtlivdvGdrveegdtlaavttrkgevrylrapvegvV 130 
                  p++gv+v + v++G +v++gd++a + + k e+  + ap  g V
  KKY13298.1 1121 PMSGVVVEIRVKEGGEVKKGDPVAVLSAMKMEM-IISAPHSGHV 1163
                  899*************************99997.5677777766 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.2     3e+03       8      37 ..     126     156 ..     121     187 .. 0.66
   2 ?    2.3   0.1      0.15   1.4e+02      34      74 ..    1082    1129 ..    1073    1132 .. 0.66
   3 ?   10.6   0.4   0.00042       0.4      25      71 ..    1118    1163 ..    1115    1170 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.2
                 EEE.EEETT.EEEEEE-HHHHHHH-SEEEEE CS
       GCV_H   8 ewv.kveedgvatvGitdfaqeelgdvvfve 37 
                 e+  kve+ g++ vG t  + ++lgd v+ +
  KKY13298.1 126 EFArKVEDAGIVFVGPTPDTINALGDKVSAR 156
                 4541567789999999999999999987654 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.15
                  EEEE---TT-EE-TT-EEEEEEES...S-....EEEEE-SSSEEEEEE CS
       GCV_H   34 vfvelpevgtkvkkgeslaavEsv...Ka....asevyapvsGevvev 74  
                  vf+e+  +  +v  +++ aavE     Ka     s+v ap+sG vve+
  KKY13298.1 1082 VFYEMNGEVRQVTVDDQKAAVENTsrpKAdsgdSSQVGAPMSGVVVEI 1129
                  666666677777777777777754222222222689**********97 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00042
                  HHHHHH-SEEEEE---TT-EE-TT-EEEEEEESS-EEEEE-SSSEEE CS
       GCV_H   25 faqeelgdvvfvelpevgtkvkkgeslaavEsvKaasevyapvsGev 71  
                  +++ + g vv ++++e g +vkkg+++a++ + K+   + ap sG+v
  KKY13298.1 1118 VGAPMSGVVVEIRVKE-GGEVKKGDPVAVLSAMKMEMIISAPHSGHV 1163
                  667788999****998.558*************************98 PP

>> NQRA  Na(+)-translocating NADH-quinone reductase subunit A (NQRA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00026      0.25      32      77 ..    1118    1164 ..    1099    1172 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00026
        NQRA   32 lgedyvglkpklkvkegdkVkkGqvlfe.dKknpgvlftspasGevv 77  
                  +g++  g+  ++ vkeg +VkkG++++  +  + ++++ +p sG+v 
  KKY13298.1 1118 VGAPMSGVVVEIRVKEGGEVKKGDPVAVlSAMKMEMIISAPHSGHVG 1164
                  677889999****************9872556779*********996 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.37   3.5e+02      66      81 ..    1115    1130 ..    1109    1132 .. 0.85
   2 ?    8.8   0.8    0.0016       1.5      41      79 ..    1126    1165 ..    1121    1184 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.37
      RnfC_N   66 sapvhasvsGtVkaie 81  
                  s++v a++sG V++i+
  KKY13298.1 1115 SSQVGAPMSGVVVEIR 1130
                  78999********996 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0016
      RnfC_N   41 pakplvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVka 79  
                    ++ vk+g +V+kG+ +a  ++  + + + a+ sG+V +
  KKY13298.1 1126 VVEIRVKEGGEVKKGDPVAVLSAmKMEMIISAPHSGHVGS 1165
                  5677899999999999999988856688899999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.86u 0.36s 00:00:01.22 Elapsed: 00:00:00.49
# Mc/sec: 7210.79
//
Query:       KKY13299.1  [L=603]
Description: hypothetical protein UCRPC4_g06979 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-13   49.9   0.0    5.1e-13   48.8   0.0    1.6  1  OTT_1508_deam  OTT_1508-like deaminase
     0.0005   19.8   0.3    0.00086   19.0   0.3    1.4  1  Med4           Vitamin-D-receptor interacting Mediator subuni


Domain annotation for each model (and alignments):
>> OTT_1508_deam  OTT_1508-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   5.7e-17   5.1e-13       1      64 []     352     411 ..     352     411 .. 0.92

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 5.7e-17
  OTT_1508_deam   1 vHAEvqlleyleeekdkekqepryIgcSKpaCylCelylrahgkatlkvreshgklydkWrlPd 64 
                    vHAE+ ll ++e +++++  +pr+I   K +CylC+l++r hg++++  +++ g l  +W lPd
     KKY13299.1 352 VHAEIKLLFFYEIHPNIK--RPRVITANKSSCYLCDLFFRLHGTFQV--PSTFGMLTERWILPD 411
                    8************99884..48********************96666..*************97 PP

>> Med4  Vitamin-D-receptor interacting Mediator subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.3   9.6e-08   0.00086      12     101 ..     160     241 ..     153     345 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 9.6e-08
        Med4  12 delskslkeleehqknearilqLraev..eslDekikeivksLkeyekeLkavpdqenskldtasiklaekrevdseeLLdYArrISkytsv 101
                  ++s+ l  +++h+ ++++i qLr+ v  ++l+ ++k  ++ L++++++Lka+           ++ + e + v+  +++ +A+++S++ s+
  KKY13299.1 160 SRISSRLRLARKHDIISTEIMQLRQSVsnAELEMETKAELNDLVRLYRQLKASS----------EPSTNEANVVTLAKIIGLAHNLSQSHSF 241
                 578999*******************9833578999*****************99..........78999999***************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.49
# Mc/sec: 3711.89
//
Query:       KKY13300.1  [L=303]
Description: hypothetical protein UCRPC4_g06980 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1862.07
//
Query:       KKY13432.1  [L=155]
Description: putative sister chromatid cohesion protein ctf8 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-32  111.5   0.1    3.4e-31  108.5   0.1    1.9  1  Ctf8            Ctf8
  ------ inclusion threshold ------
      0.015   14.1   0.0       0.02   13.6   0.0    1.1  1  Adeno_PV        Adenovirus minor core protein PV
       0.04   14.5   1.3      0.065   13.8   1.3    1.3  1  DUF4682         Domain of unknown function (DUF4682)


Domain annotation for each model (and alignments):
>> Ctf8  Ctf8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5   0.1   5.6e-35   3.4e-31      28     142 .]      14     153 ..       2     153 .. 0.83

  Alignments for each domain:
  == domain 1  score: 108.5 bits;  conditional E-value: 5.6e-35
        Ctf8  28 eeesvsdeakaqetveevkiGrldfpdyspeae...dtkwmkrvyLyvgkhQrLtGevkkLakplavlrrrksekkee.eeeeeekeeekss....... 115
                 ++++ s + ++ + + +++iG+l+fp y+p+++   d++wmkrv+Lyvgk+QrL GevkkLakp++vlr+r ++k ++ + ++ ++ +  ++       
  KKY13432.1  14 SDADLSPSPETPSPTISTPIGHLTFPFYTPDNTdhnDKSWMKRVHLYVGKNQRLAGEVKKLAKPFGVLRKRVENKPDTkPGSGVTDIDMGTQnisstss 112
                 44446677777788899*************999899**********************************97665544044444443333337889999 PP

        Ctf8 116 ..............eeeseeeleivdivkykiifssrPePv 142
                               e+e++eelei+di++y+i+fs rPePv
  KKY13432.1 113 sstttstkenengnENEPKEELEILDIIEYRILFSARPEPV 153
                 *************99999**********************8 PP

>> Adeno_PV  Adenovirus minor core protein PV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.4e-06      0.02     172     235 ..      56     121 ..      41     129 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.4e-06
    Adeno_PV 172 tvqlmvpkrqrledvlekmtvepglepevrvrpikqvapglgvqtvdv...qipttsstsiatateg 235
                  v+l v k qrl   ++k++   g+    rv    +  pg gv  +d+   +i +tss+s +t+t+ 
  KKY13432.1  56 RVHLYVGKNQRLAGEVKKLAKPFGVL-RKRVENKPDTKPGSGVTDIDMgtqNISSTSSSSTTTSTKE 121
                 699***************99887764.45777777999*********83323555666666666554 PP

>> DUF4682  Domain of unknown function (DUF4682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.3   1.1e-05     0.065      46     125 .]      58     133 ..      41     133 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.1e-05
     DUF4682  46 hLllgkkarssnkgkrnkapqkavppeakrsslklkskeespWrthlrvhrrnqarakkelkkgdskgkeeeeserlkee 125
                 hL++gk+ r     k+ + p +   +  ++++    +k+ s  ++ + +  +n+++++++++ +++k++e++++++ kee
  KKY13432.1  58 HLYVGKNQRLAGEVKKLAKPFGVLRKRVENKPD---TKPGSGVTD-IDMGTQNISSTSSSSTTTSTKENENGNENEPKEE 133
                 9****************9999997777555554...589999888.999************************9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1137.12
//
Query:       KKY13433.1  [L=381]
Description: putative o-methyltransferase b [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.3e-21   74.3   0.0    1.1e-20   73.8   0.0    1.3  1  Methyltransf_2  O-methyltransferase domain
    0.00014   21.8   0.2    0.00035   20.5   0.2    1.7  1  Dimerisation2   Dimerisation domain
     0.0019   18.2   0.1     0.0048   16.9   0.1    1.8  1  Dimerisation    Dimerisation domain


Domain annotation for each model (and alignments):
>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.0   1.9e-24   1.1e-20      65     209 ..     219     359 ..     149     360 .. 0.92

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 1.9e-24
                     EEEEET-TTSHHHHHHHHH-TT-..EEEEEE-HHHHHHHHHHS-----TTEEEEES-TTTS.-----SEEEEESSGGGS-HHHHHHHHHHHHHH- CS
  Methyltransf_2  65 slvDvGGGtGalakaivsayPti..kvivfDlpeVveaAkehlsageeervefvgGdffkd.slPeaDaillkrvlhDwsdekcvklLkrvkkal 156
                      +vDvGG +G   +   ++yP++  ++iv Dl e +++A+        ++vef+  +ff++ ++  a  + l  vlhDw+d+k  ++L+++  a+
      KKY13433.1 219 LFVDVGGSIGHQSARLRHKYPQLpgRIIVQDLEETIKNAPAV------PGVEFMTHNFFNEqPIKGARYYYLRTVLHDWEDDKGEEILRNIVPAM 307
                     579******************98557899*************......***********6425779***************************** PP

                     -TT-EEEEEE----TTS---HHHHHHHHHHHHCSS-----HHHHHHHHHHCT- CS
  Methyltransf_2 157 pagGkvivveavlgadpsgeletelvdlimlvqteGkeRteaeyeellseaGf 209
                      ++ ++++ e+vl++ +++  ++ l dl +  + + +eR+  ++++ll +aG 
      KKY13433.1 308 APDSQILIDEMVLPTTGAHWFSACL-DLHIYTMLGAMERNVDQWKALLDRAGL 359
                     *****************99999888.999999999****************96 PP

>> Dimerisation2  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   5.8e-08   0.00035      14      78 ..      56     117 ..      43     123 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 5.8e-08
  Dimerisation2  14 aLftAceLgvFdlLke.eeplsaeevaeelgasvkGterLldacvaLgLLerekkeekkalYsnte 78 
                    ++ + c+Lg+F +L   e+pls++++a++ +a++  + rLl+ +++++  + +   + k+ Y   +
     KKY13433.1  56 VIRAGCDLGLFKTLSAsERPLSSADLAASANANTLLVGRLLRYLASIRVITET---G-KDSYASNN 117
                    67799***********9*******************************99944...2.24555444 PP

>> Dimerisation  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1     8e-07    0.0048       2      51 .]      56     100 ..      55     100 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 8e-07
  Dimerisation   2 vLKaAiELglldiiakaggkplspsEiaskLptknpeapvlldRlLRlLa 51 
                   v++a  +Lgl+ ++ ++  +pls  ++a++ +      + l+ RlLR+La
    KKY13433.1  56 VIRAGCDLGLFKTLSASE-RPLSSADLAASAN----ANTLLVGRLLRYLA 100
                   788999***********7.***********99....556799*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2714.27
//
Query:       KKY13450.1  [L=342]
Description: putative nad-dependent malic enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-94  313.4   0.1    1.1e-93  313.2   0.1    1.0  1  Malic_M    Malic enzyme, NAD binding domain
  ------ inclusion threshold ------
      0.043   13.8   0.0      0.092   12.7   0.0    1.5  1  Dicty_CAD  Cell-cell adhesion domain
      0.046   13.5   0.1      0.083   12.7   0.1    1.3  1  YqgF       Holliday-junction resolvase-like of SPT6


Domain annotation for each model (and alignments):
>> Malic_M  Malic enzyme, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.2   0.1   1.9e-97   1.1e-93       1     257 [.      45     302 ..      45     303 .. 0.98

  Alignments for each domain:
  == domain 1  score: 313.2 bits;  conditional E-value: 1.9e-97
                 THHHHHHHHHHHHHHHHHH-S-GGG--EEEEC-SHHHHHHHHHHHHHHHTT.TS-HHHHHTTEEEEETTEE-BTT-.S---TTTGGGSBS--SS--S.. CS
     Malic_M   1 iqgTaavalagllaalkitgkklseqkivvlGaGsagiGiaeqivealvke.GlseeeakkkiylvDrkGLltedr.ekleeekkpfakkkeelkeakd 97 
                 +qgT++v+la+++a+l++ ++k+++ +iv++G+G+ag+Giaeqi++a++++  +s+eea+k+i++vD+ G+l +++ +kl++++ pfa++++e + + +
  KKY13450.1  45 VQGTGCVTLAAIMAGLHVCNMKVNDLRIVIFGSGTAGTGIAEQIRDAIAADsDISKEEAAKQIWCVDKPGVLLKSHgDKLTHAQIPFARDDKEWEGK-E 142
                 7**********************************************999879******************99999899***************966.8 PP

                 ..SHHHHHHHH--SEEEE-SSSSS-S-HHHHHHHHHHSSS-EEEE--SSGGGSSS-HHHHHHHTTT-SEEEESS----EEETSEEE--EE--GGGTHHH CS
     Malic_M  98 kltLeevvkkvkptvliGlsgvagafteeivremaksterPiilplSNPtskaEataedvlkwtdgkalvasGsPfkpvelngktyeigQaNNayifPg 196
                 +++L+evvk+vkp+vliG+s+ +++ft+ei++ema+++erPii+plSNPt+  Ea +ed+ +wtdgkal+a+GsPf+pv++ng++ye++ +NN+  fPg
  KKY13450.1 143 HQNLLEVVKEVKPHVLIGTSTKPKSFTKEIIQEMAQHVERPIIFPLSNPTRLHEANPEDINAWTDGKALIATGSPFPPVTHNGQEYEVAECNNSTCFPG 241
                 99************************************************************************************************* PP

                 HHHHHHHTT-SS--HHHHHHHHHHHHTT--HHHHHTT-SS--GGGHHHHHHHHHHHHHHHH CS
     Malic_M 197 lglgvivarakritdemllaaaealaelvseeelkegsllPelseirevslkvavavakaa 257
                 +glg++++ra++++d+ml++a +ala +  + +  ++ llP++ ++r++s+k+a++v+ +a
  KKY13450.1 242 IGLGAVLSRASKLSDKMLVSAVKALAAQSPALKDPNKGLLPDVVDVRDISVKIAMEVIMCA 302
                 *****************************9999999*********************9887 PP

>> Dicty_CAD  Cell-cell adhesion domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.5e-05     0.092      14      68 ..     177     236 ..     170     239 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.5e-05
   Dicty_CAD  14 aitlPaPrifPppyfirfleYkteG.klwdneefeiksgk....vefdGeeydipesrgg 68 
                 a ++  P+ifP     r+ e + e  + w++ +  i++g+    v+ +G+ey+++e + +
  KKY13450.1 177 AQHVERPIIFPLSNPTRLHEANPEDiNAWTDGKALIATGSpfppVTHNGQEYEVAECNNS 236
                 667778*************9999999*************88888**********998765 PP

>> YqgF  Holliday-junction resolvase-like of SPT6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.4e-05     0.083      24      87 ..     115     176 ..      96     184 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.4e-05
                 EEE-TTS-EEEEEEE-S-TT-SS-SHHHHHHHHHHHHHH--SEEEE--SSTHHHHHHHHHHHHH CS
        YqgF  24 vlvngeGevvdslklaareedrekkakfvetlkkfllskkPdvigvsGenrdaqkliedvkevl 87 
                 vl+  +G+ + + ++    +d+e + k  ++l ++++++kP+v+   G++++ + +++++ + +
  KKY13450.1 115 VLLKSHGDKLTHAQIPFARDDKEWEGKEHQNLLEVVKEVKPHVL--IGTSTKPKSFTKEIIQEM 176
                 688999*********999************************96..466666666665554333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2234.74
//
Query:       KKY13451.1  [L=523]
Description: hypothetical protein UCRPC4_g06971 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-40  138.3   0.6    2.1e-40  138.3   0.6    3.2  3  RXT2_N    RXT2-like, N-terminal


Domain annotation for each model (and alignments):
>> RXT2_N  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   0.6   1.2e-44   2.1e-40       1     156 []      35     173 ..      35     173 .. 0.91
   2 ?    1.3   3.0     0.017     3e+02      33      83 ..     216     268 ..     200     283 .. 0.51
   3 ?   -1.8   5.4      0.16   2.8e+03      37      82 ..     281     336 ..     275     352 .. 0.59

  Alignments for each domain:
  == domain 1  score: 138.3 bits;  conditional E-value: 1.2e-44
      RXT2_N   1 tNRGnKLkkkaefvhegrLnsskgdeelkkkveyngserkilsrnpierskrkkkekekeekeeeeedeegdeededdddeeeaeaaeenpykkvrlee 99 
                 +NRGnKLk+ aefvh+g+L+  kg+e++k+k++++g++r+il rnpi++               ++  +e +++++d++  ++a aaeen y+ ++lee
  KKY13451.1  35 SNRGNKLKRGAEFVHQGSLAYIKGPEAYKEKIDHAGYTRYILDRNPIRY---------------NKYGDEIEDDESDEE--ADALAAEENAYSGLKLEE 116
                 8************************************************...............333444444333333..36899************* PP

      RXT2_N 100 lLaPltspsdlithpslsrtykskaLteLalqlieliekEqeslvklkkLlevllGd 156
                 lL Pl++psdl +hp+l ++y+skaL ++++ + + ++kE++ l ++k L+++l Gd
  KKY13451.1 117 LLRPLKHPSDLSHHPALAEPYTSKALPNMIQATNNQLRKEKADLARAKDLHRQLIGD 173
                 ********************************************************9 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.017
      RXT2_N  33 eyngserkilsrnpierskrkk.........kekekeekeeeeedeegdeededdddeee 83 
                 ey+gs  + l++ ++  s                     +++++++e++++d dd+  +e
  KKY13451.1 216 EYAGSVSSTLQNASVPDSAD-AgpvhidqdtV------MADATSEQEQSKDDRDDQAGSE 268
                 78888888888777777433.24764432220......2333333333333333222212 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.16
      RXT2_N  37 serkilsrnpierskrkk...........kekekeekeeeeedeegdeededdddee 82 
                 +++ i +r++++ ++  +           +++ + +k ++++deeg+e+  d+++e+
  KKY13451.1 281 QDHAIAKRRNQKEDTNTHepttdgdigvgRTNGQVTKLQKTTDEEGEEKG-DNGREQ 336
                 56778777777775555579999999998444444455555555555443.333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1098  (0.0612416); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.52
# Mc/sec: 3048.01
//
Query:       KKY13452.1  [L=214]
Description: hypothetical protein UCRPC4_g06972 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1486.24
//
Query:       KKY13453.1  [L=214]
Description: hypothetical protein UCRPC4_g06973 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 1375.14
//
Query:       KKY13454.1  [L=306]
Description: putative ketoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-40  138.0   0.0    1.5e-39  136.0   0.0    1.7  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.0   0.0   8.3e-44   1.5e-39       3     291 ..      25     285 ..      22     287 .. 0.91

  Alignments for each domain:
  == domain 1  score: 136.0 bits;  conditional E-value: 8.3e-44
                   EEE-SSS-ST......TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHH.HHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHH CS
  Aldo_ket_red   3 glGtwqlgsk.....eeiskeealellrraleaGinffDtAevYgkgqseel.lGealkksrkkreeviiatKvdlrdaeiksglskenireslees 93 
                   glGt++ ++k         ++  +e++ +a+  G+ ++D Ae+Y    s ++ lG a+k+s+ +re+++i+ K+       +s  s +n+   l++ 
    KKY13454.1  25 GLGTAASSNKkagsfFSSVDKGLVEIIGKAIAMGYYHLDGAEMY----STDVdLGAAVKASKLPREKFFITAKL------DPSTPSIDNVSSTLDKA 111
                   67787777778885545556678999******************....99999*********************......9**************** PP

                   HHHHT-S-EEEEEE-S--TTS-....HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEE CS
  Aldo_ket_red  94 lkrLgtdyvDllllHrpdpslp...sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpli 187
                   lk + +dyvDl+l+H+p+++ +    + + ++ +e l+k+Gk +aiGvSnf   ++e ++k+++++++++qve++++  l+ egl+++ck k++++ 
    KKY13454.1 112 LKDMSVDYVDLFLIHEPFFAKDnekLLQKKWSEMEALQKSGKTKAIGVSNFLQPHIETILKTAEIPPAVNQVEFHPY--LQREGLVDFCKSKNIQVT 206
                   **********************666566778**********************************************..****************** PP

                   EBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HH CS
  Aldo_ket_red 188 aysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklsee 284
                   ay+pl    + + + +                       d ++ l+ lak++ vs+ ++ lr+++  ++ +i+i  +s+  ++ d l+al +kl+  
    KKY13454.1 207 AYGPLTPATRAKGKSE-----------------------DFDKYLDILAKKYYVSPGEILLRWCI--DQDVIPITTTSKEIRMSDYLRALTFKLTLR 278
                   *****96666544332.......................344568889999**************..9***************************99 PP

                   HHHHHHH CS
  Aldo_ket_red 285 evaelde 291
                   e++e++e
    KKY13454.1 279 ELDEIAE 285
                   9999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 1933.20
//
Query:       KKY13455.1  [L=349]
Description: hypothetical protein UCRPC4_g06975 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.50
# Mc/sec: 2108.39
//
Query:       KKY13499.1  [L=964]
Description: putative chromosome segregation protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.6e-176  587.2   0.0   2.9e-176  586.3   0.0    1.4  1  CAS_CSE1       CAS/CSE protein, C-terminus
     2e-143  477.7   3.0   3.1e-143  477.1   3.0    1.3  1  Cse1           Cse1
    5.4e-14   51.9   0.1    2.7e-13   49.6   0.0    2.4  2  IBN_N          Importin-beta N-terminal domain
    1.5e-05   25.1   5.5     0.0027   17.8   0.0    5.2  7  Xpo1           Exportin 1-like protein
  ------ inclusion threshold ------
      0.024   13.8   0.3      0.069   12.3   0.1    1.8  2  Phyto_Pns9_10  Phytoreovirus nonstructural protein Pns9/Pns10
      0.061   13.3   0.4       0.43   10.6   0.3    2.4  2  TM_helix       Conserved TM helix
      0.073   12.8   0.0       0.39   10.5   0.0    2.2  3  Imm49          Immunity protein 49
        0.1   11.9   0.0       0.38   10.0   0.1    1.9  2  Rcd1           Cell differentiation family, Rcd1-like


Domain annotation for each model (and alignments):
>> CAS_CSE1  CAS/CSE protein, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  586.3   0.0  1.3e-179  2.9e-176       1     443 []     523     961 ..     523     961 .. 0.99

  Alignments for each domain:
  == domain 1  score: 586.3 bits;  conditional E-value: 1.3e-179
    CAS_CSE1   1 erlLtlrdeqgqpiitkediaPlakdllenlFkllekdesaeklqENeylmkcimRvlivikeavlpvadvvlqkLieilevvskNPsnPrFnyYlFEa 99 
                 er+L+l+ ++g+pii ++ i Plakdl+e++F+l+ekd++++k+qENe+lm+c+mRvlivike+  p++d++l++Li+i++++  NPsnPrF+yY+FE+
  KKY13499.1 523 ERILYLTGDNGRPIIDPSAIMPLAKDLVEHIFSLIEKDSAPQKVQENEFLMRCVMRVLIVIKEGLSPLTDILLSHLIKITNIIIANPSNPRFYYYHFES 621
                 8************************************************************************************************** PP

    CAS_CSE1 100 lgalvrlaakadpaavskleeaLfpvfqaiLqedvtEFvPYvfQllaaLleanksetlpesykaliellLsPalWerkgNvpaLvrLlsaiikkasqei 198
                 +gal+r++  ++++   k++++Lf++f+++Lq++v EF+PYvfQl+aaLle n s+ lp++y++li+++L+P +We++gNvpaLvrLlsaii+ as e+
  KKY13499.1 622 IGALIRFSDASQAS---KIQQELFQPFVTVLQNNVDEFIPYVFQLFAALLENNASGGLPPAYQSLITPILAPPVWEQRGNVPALVRLLSAIIPLASTEM 717
                 *******8877666...********************************************************************************** PP

    CAS_CSE1 199 vaenklepvLgiFqkLiaskandeegFdlLesvieslpaevlekylktilsllltrlqnsktekfkkrlvvflslvsakddkgl.gadaliqlidkvQa 296
                 ++ n++e vLgiFqkL+++k++++++FdlLe+vie +pa++l++y + i+++l+trlqns+t+ f  r+v++++++sa+d+ g+ g+d+ i ++d+vQ+
  KKY13499.1 718 QNSNQIEHVLGIFQKLVSAKSTESQAFDLLETVIECFPASALQPYWTPIFQVLFTRLQNSRTQTFDFRFVRLYHFISARDTWGInGTDFYISITDAVQQ 816
                 ********************************************************************************9976489999********* PP

    CAS_CSE1 297 nvftpllekvilpelqklarpldrKlavvsltkllaesealldrykklwaklleallkllekpeeeaaadedeiieeadvedlgfgvaftkLntakkke 395
                 ++f  ++++++lpe qk+ r+ld+K+a+vs+tkll +sea++ ry+k+w++ ++allklle+++ +++  +d+ii++ dved+gfgv+ft+L+t+kk+ 
  KKY13499.1 817 DIFRGVYLSIVLPESQKIVRSLDKKTACVSFTKLLGDSEAFVTRYPKGWPHSCNALLKLLEEAPAPTK--ADDIIADYDVEDMGFGVGFTQLQTIKKAL 913
                 ******************************************************************99..9**************************** PP

    CAS_CSE1 396 eDplpeikdvkqfvaqslkeaskahngriskivserleaeakqvLaey 443
                  Dp+p++ d++++v+ +l++a+k+h+gr++k+v+e+l+++ak+vL +y
  KKY13499.1 914 ADPFPDVVDLRKWVGGYLQDADKRHGGRVAKFVQESLSDDAKKVLMAY 961
                 *********************************************988 PP

>> Cse1  Cse1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  477.1   3.0  1.4e-146  3.1e-143       1     370 []     154     522 ..     154     522 .. 0.98

  Alignments for each domain:
  == domain 1  score: 477.1 bits;  conditional E-value: 1.4e-146
                 HHGGGTTS---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHSSS--HHHHHTHHHHHHHHHHHHH--SGGG- CS
        Cse1   1 ifkrwrplfrsdeLfleiklvldkfaepllellkkvdelieakkedkaalkvlfevllllvklfydlnsqdlPeffEdnlkelmealhkylsldnplle 99 
                 +f  wrplfrsdeLf+ei++ l+kf+ p+l  l+++d++ie +++dk+al++ f+ l ll++lfydl++qdlP+ fEd +++l++ lhkyl +dnpll+
  KKY13499.1 154 VFSTWRPLFRSDELFTEINYTLKKFCGPYLVALQNIDSYIEGHASDKQALQQAFTELDLLLQLFYDLSCQDLPPQFEDSIQQLASLLHKYLVYDNPLLH 252
                 6999*********************************************************************************************** PP

                 TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS CS
        Cse1 100 tdddeeasvleklkasicelvqlyvekyeeefepyleefveavWnllvsvskqtkyDilvskalkFltsvakvkkyaelFeneevlkeiiekvvlpnvt 198
                 td+d++a+vle++ka i++++ lyv+ky + f++   +f+ + Wnll++++++ k Dilvskal+Flt+++kv+  ae F+ne++l +++ekv+lpnvt
  KKY13499.1 253 TDSDDDAGVLENVKATIFDALVLYVQKYYDAFGTSAAQFIGSSWNLLTTINSDVKNDILVSKALHFLTAISKVRSEAEAFNNESTLGQVVEKVILPNVT 351
                 *************************************************************************************************** PP

                 --HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTT.B-S-B CS
        Cse1 199 lResDeElFEdepieyirrDlEGsdvdtRrraatdllkeLkekfeakvtevvleyvekllekykenpsanWkkkdlaiyLvtslavkgevtks.Gvtst 296
                 lR+sD+E+FEdepie+irrDlEGsd++tRrraatd+l++L+++fe +vt++vl yve++le y+++ ++nW++kd+a+yL+ s+a+kg +t+s Gvt++
  KKY13499.1 352 LRDSDVEMFEDEPIEFIRRDLEGSDSETRRRAATDFLRQLMDHFELLVTKIVLGYVERFLEAYNSD-KSNWRSKDTAVYLFNSVAAKGVATASqGVTQI 449
                 **************************************************************9876.68*******************998877***** PP

                 -TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH CS
        Cse1 297 nelvdvvdFfakeiapdLeadvneepilkvdaiKyivtFRsqlskeqlievlpllikfLksesvvvytYaaiai 370
                 n  vd+ dFf+k++a+dL     +e +lkvdaiK++++FRs +   q+++++pll+++L ++++vvytYaai +
  KKY13499.1 450 NPSVDIGDFFQKHLANDLF-TGDAEALLKVDAIKFLYIFRSLIDAPQWQQIMPLLVNHLGNSNYVVYTYAAIVV 522
                 *******************.6667899********************************************975 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   1.2e-16   2.7e-13       1      74 []      27     100 ..      27     100 .. 0.97
   2 ?   -3.2   0.1       3.8   8.5e+03      29      38 ..     231     240 ..     201     256 .. 0.61

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 1.2e-16
                 HHHHHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHCGSXHHHHHHHHHHHHHHHHH CS
       IBN_N   1 AekqLkqlekqpgflsallqilanseselevRqlAalyLknlitkhWsdeeekqslpseekeqIrnnllnllgs 74 
                 Ae +L+  ek pgf  +llqi+a+++ + ++R+++al++knli+++W+dee + +lp+++   ++ +l+ l++s
  KKY13499.1  27 AELSLRAEEKKPGFSILLLQIAATESYPYNTRLSSALCFKNLIKRNWTDEEGNYKLPEQDVGPLKAELVGLMVS 100
                 89999999*************************************************************99975 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.8
                 HHHHHHHHHH CS
       IBN_N  29 levRqlAaly 38 
                  +++qlA+l+
  KKY13499.1 231 DSIQQLASLL 240
                 2566676664 PP

>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.2e-06    0.0027       4      51 ..     105     150 ..     102     176 .. 0.85
   2 ?    1.2   0.0      0.16   3.6e+02      10      38 ..     215     243 ..     210     264 .. 0.87
   3 ?   -1.4   0.0      0.95   2.1e+03      80     136 ..     496     557 ..     487     570 .. 0.63
   4 ?   -2.3   0.0       1.9   4.2e+03      33      54 ..     564     585 ..     546     589 .. 0.72
   5 ?   -2.9   0.1       2.8   6.2e+03       7      36 ..     636     665 ..     634     673 .. 0.62
   6 ?    3.5   0.1      0.03        67      78     113 ..     719     756 ..     712     790 .. 0.76
   7 ?   -2.9   0.0       2.8   6.2e+03      16      40 ..     857     881 ..     854     884 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCT.HHHHHHHHHHHHH CS
        Xpo1   4 lrnklaealaelflqeypnnWpsffddllsllssspsglelllriLkv 51 
                 ++++l ea++ +++ +y+++W +++ddl+s+l+++ +  ++++ +L+v
  KKY13499.1 105 IQTQLGEAISIIAKSDYYERWDTLVDDLVSRLTPDNI--KVNIGVLQV 150
                 89******************************99654..446666655 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.16
                 HHHHHHHHHHTTTTSTTHHHHHHHHHCT. CS
        Xpo1  10 ealaelflqeypnnWpsffddllsllsss 38 
                 +++ +l +q+ p ++++ +++l sll++ 
  KKY13499.1 215 QLFYDLSCQDLPPQFEDSIQQLASLLHKY 243
                 7888999*****************99985 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.95
                 HHHHHHHHHHHHHHHHHCC..HHHHHHHHHHHHHHHHTT.TS-HHHHHT..SCHHHHHHHHC CS
        Xpo1  80 vqkilelllqileqsqskk..qsselveavLkclsswvs.widiglivn..npllnllfqlL 136
                  q+i+ ll + l +s+     + + +ve +L   +   +  id + i+   ++l++++f+l+
  KKY13499.1 496 WQQIMPLLVNHLGNSNYVVytYAAIVVERILYLTGDNGRpIIDPSAIMPlaKDLVEHIFSLI 557
                 56666666666666655446666666777776666666666667777643144777777766 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.9
                 HHHCT.HHHHHHHHHHHHHHHH CS
        Xpo1  33 sllssspsglelllriLkvlpe 54 
                 ++++ ++  + +++r+L v++e
  KKY13499.1 564 QKVQENEFLMRCVMRVLIVIKE 585
                 4455557788899999999987 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 2.8
                 HHHHHHHHHHHHHTTTTSTTHHHHHHHHHC CS
        Xpo1   7 klaealaelflqeypnnWpsffddllslls 36 
                 k+++ l + f+   +nn  +f++ +++l+ 
  KKY13499.1 636 KIQQELFQPFVTVLQNNVDEFIPYVFQLFA 665
                 555555666666666666777777666665 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.03
                 HH..HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH CS
        Xpo1  78 sn..vqkilelllqileqsqskkqsselveavLkclss 113
                 ++  ++++l ++++++++ ++++q  +l+e v++c+ +
  KKY13499.1 719 NSnqIEHVLGIFQKLVSAKSTESQAFDLLETVIECFPA 756
                 44469*************99999999*********943 PP

  == domain 7  score: -2.9 bits;  conditional E-value: 2.8
                 HHHHTTTTSTTHHHHHHHHHCT.HH CS
        Xpo1  16 flqeypnnWpsffddllsllsssps 40 
                 f+  yp+ Wp   + ll+ll+  p+
  KKY13499.1 857 FVTRYPKGWPHSCNALLKLLEEAPA 881
                 6778999999999999988877665 PP

>> Phyto_Pns9_10  Phytoreovirus nonstructural protein Pns9/Pns10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.6   3.6e+03     160     184 ..     175     199 ..     169     209 .. 0.76
   2 ?   12.3   0.1   3.1e-05     0.069     193     303 ..     254     360 ..     231     379 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.6
  Phyto_Pns9_10 160 lskilkeyytaleeveayleklpdd 184
                    l k+   y +al+++++y+e+   d
     KKY13499.1 175 LKKFCGPYLVALQNIDSYIEGHASD 199
                    66788889999999*9999987433 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.1e-05
  Phyto_Pns9_10 193 kskevlrvifsnakvliatkinkyvtlyedsyleyvrevaeyvadlwdvqtttntqghenelaaedfGvlaalsqmdttddelgdsviksdGvevk 288
                     s +   v + n+k  i + + +yv+ y d++      +a+++   w++ tt n++ +++ l+++    l+a s++ +  + + +  +  + ve  
     KKY13499.1 254 DSDDDAGV-LENVKATIFDALVLYVQKYYDAF---GTSAAQFIGSSWNLLTTINSDVKNDILVSKALHFLTAISKVRSEAEAFNNESTLGQVVEKV 345
                    55555556.8899999999999**99997765...56799*********************************99999888888888888888877 PP

  Phyto_Pns9_10 289 lepamftrnedeeel 303
                    + p +  r+ d e++
     KKY13499.1 346 ILPNVTLRDSDVEMF 360
                    888888888888876 PP

>> TM_helix  Conserved TM helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.66   1.5e+03      29      48 ..     398     417 ..     397     418 .. 0.87
   2 ?   10.6   0.3   0.00019      0.43       2      22 ..     648     668 ..     647     668 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.66
                 HHHHHHHHHHHHHHHHHTS- CS
    TM_helix  29 iiAkfvsrlvtkllaktgid 48 
                 ++ k+v   v + l++ + d
  KKY13499.1 398 LVTKIVLGYVERFLEAYNSD 417
                 6889999*********9987 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00019
                 XXXSXXHHHHTTHSHHHHHHH CS
    TM_helix   2 plnnllnellsflPnLvgAil 22 
                  l+n+++e++ ++ +L++A+l
  KKY13499.1 648 VLQNNVDEFIPYVFQLFAALL 668
                 69*****************97 PP

>> Imm49  Immunity protein 49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.5   7.8e+03      81      99 ..     377     395 ..     352     421 .. 0.51
   2 ?   10.5   0.0   0.00017      0.39      81     153 ..     611     673 ..     595     674 .. 0.90
   3 ?   -3.0   0.0       2.2     5e+03      82     116 ..     859     893 ..     843     897 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.5
       Imm49  81 gtrydeydyayidalqall 99 
                 ++ ++++   + ++l++++
  KKY13499.1 377 SETRRRAATDFLRQLMDHF 395
                 3333333333333333333 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00017
       Imm49  81 gtrydeydyayidalqallddardpdaaeellaaleaalpreaaiaaaegkrldqlatpelrllraLlegDee 153
                   r++ y ++ i al  + d  ++ +  +el++++ ++l+          +++d+++ + ++l+ aLle++++
  KKY13499.1 611 NPRFYYYHFESIGALIRFSDASQASKIQQELFQPFVTVLQ----------NNVDEFIPYVFQLFAALLENNAS 673
                 557999*****************999**********9988..........99******************987 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.2
       Imm49  82 trydeydyayidalqallddardpdaaeellaale 116
                 try++ + +  +al  ll++a +p++a++++a+++
  KKY13499.1 859 TRYPKGWPHSCNALLKLLEEAPAPTKADDIIADYD 893
                 66778888888999999999999999999999887 PP

>> Rcd1  Cell differentiation family, Rcd1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.93   2.1e+03     137     166 ..     497     526 ..     488     530 .. 0.90
   2 ?   10.0   0.1   0.00017      0.38      25      86 ..     685     743 ..     679     754 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.93
        Rcd1 137 teivplclrimesGselsktvAtfIlqkiL 166
                 + i+pl+++ + +++ +  t A+ ++++iL
  KKY13499.1 497 QQIMPLLVNHLGNSNYVVYTYAAIVVERIL 526
                 6799*************************9 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00017
        Rcd1  25 vedlallLwesfgtvaaLLqeivsiYpllspptltaaesnrvcnaLallqcvashpetrklf 86 
                  + la+ +we+ g v aL + + +i pl s++   +++sn++ ++L ++q ++s ++t+++ 
  KKY13499.1 685 TPILAPPVWEQRGNVPALVRLLSAIIPLASTE---MQNSNQIEHVLGIFQKLVSAKSTESQA 743
                 5789999***********99999999998866...799*****************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (964 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.53
# Mc/sec: 5461.83
//
Query:       KKY13500.1  [L=187]
Description: putative methyltransferase type 11 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00083   19.2   0.0    0.00087   19.2   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
       0.14   12.9   0.0       0.23   12.1   0.0    1.6  1  Methyltransf_11  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   9.7e-08   0.00087      78     120 ..      73     117 ..       4     159 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 9.7e-08
  Methyltransf_23  78 epqgkfdlIvlrevlehvp..dppellrqiatllkpgGylllsep 120
                      +++g fd+I ++ vl+++   d++++l   ++llkp G l++ e+
       KKY13500.1  73 PSSGIFDTILSIRVLCSFTqsDLESTLLVSQALLKPSGKLVFYEH 117
                      57889*************9888*******************9987 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.6e-05      0.23      59      96 .]      75     114 ..       5     114 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.6e-05
                      TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11  59 dnsfDlvvssevlhhv..edpekalkeiaRvLkpgGllvi 96 
                      ++ fD ++s  vl+ +   d+e++l     +Lkp G+lv+
       KKY13500.1  75 SGIFDTILSIRVLCSFtqSDLESTLLVSQALLKPSGKLVF 114
                      467*************999*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.32s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1220.33
//
Query:       KKY13521.1  [L=303]
Description: hypothetical protein UCRPC4_g06967 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.7e-100  334.4   0.0   6.5e-100  334.2   0.0    1.0  1  PTase_Orf2  Aromatic prenyltransferase Orf2


Domain annotation for each model (and alignments):
>> PTase_Orf2  Aromatic prenyltransferase Orf2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.2   0.0  3.6e-104  6.5e-100       1     286 [.       9     297 ..       9     298 .. 0.97

  Alignments for each domain:
  == domain 1  score: 334.2 bits;  conditional E-value: 3.6e-104
  PTase_Orf2   1 fdlarFlsdiealaallevtyseraveevlevfkenfargvvlwrvttkeadslnfRfysrekiDtveiAiskgLlpdadhavlsllaeWsslkkgapv 99 
                 f+ +rF +d+++++++++++yse a++ v+e+++++f++g+vlwr+t++++d+ln+Rfy+r++ Dtv++A+++gLl + dh +++l+++Wssl+ g+p+
  KKY13521.1   9 FNPSRFFEDVQNTCTAINAPYSESATQGVIEAYSNSFHTGAVLWRTTDRPGDALNYRFYERKPTDTVSRAVEAGLL-KPDHHLGQLITSWSSLYSGTPE 106
                 6779************************************************************************.********************** PP

  PTase_Orf2 100 esiDfdvgkGlkKvWvyfGgerpledllglenvPeslrqhekkfleagldkvrvvavDyrsrtvNlYfrakapleleevatlirlvG.seppseeklal 197
                 +s+Dfd+++Gl+K+Wvy+Gg+rp++d+l ++ vPes+r h  +f ++gl+ vr+va Dy s+t N+Yfra++p++l+++ t irl+  +  +s +++++
  KKY13521.1 107 QSCDFDAERGLTKAWVYMGGMRPVDDILNAPHVPESIRRHGPTFHSLGLELVRHVAADYLSETLNIYFRAPGPINLQQAITYIRLADvTLNISADEVEE 205
                 ************************************************************************************99736799******* PP

  PTase_Orf2 198 mre.....aftvavTidldsgdieRvsfyalklpendaeflprlgtkiarFvqeaPsqdkeeknvvawsfg.eseeYvKlersYtgdlasvlkgw 286
                 mr+     +ft+ vT+   +g+i+Rv+fyalkl   +   +p ++++++ F+ eaPs+d+ee+n++awsfg  +++Y+K+ersY+g+l++++k w
  KKY13521.1 206 MRQflnptGFTFSVTMAYTTGEIQRVAFYALKLHPGK---YPVINDRLKVFFSEAPSYDEEEMNAIAWSFGkGGKKYIKAERSYCGELVPLMKDW 297
                 ********************************88777...9******************************55789***************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 1950.16
//
Query:       KKY13621.1  [L=235]
Description: putative reverse [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.023   15.3   1.2      0.056   14.1   1.2    1.6  1  SlyX      SlyX
      0.069   13.1   1.4        3.6    7.7   0.0    2.3  2  IBV_3A    IBV 3A protein


Domain annotation for each model (and alignments):
>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.2   6.2e-06     0.056      21      65 ..      23      60 ..      16      65 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.2e-06
                HHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXXXXXXXXX CS
        SlyX 21 eLndvvaeqqqqidrlqrqlrllaerlkeleessgaseaeeepPP 65
                +        qq +  lq+q+++la+++ +  ++ g+++++++pPP
  KKY13621.1 23 T-------LQQMMIGLQQQIQALANKVDNYITERGSTNSPNPPPP 60
                4.......4566666666666666666666666666666666666 PP

>> IBV_3A  IBV 3A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.3    0.0048        43      24      42 ..      24      42 ..      19      50 .. 0.79
   2 ?    7.7   0.0    0.0004       3.6      42      56 ..     121     135 ..     113     136 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0048
      IBV_3A 24 frefiialqqliqvllqii 42
                +++++i lqq iq l   +
  KKY13621.1 24 LQQMMIGLQQQIQALANKV 42
                67789********997655 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0004
      IBV_3A  42 insnlqsrltlWhsl 56 
                   + lqsr+ lW+sl
  KKY13621.1 121 ARAGLQSRINLWYSL 135
                 5678**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      666  (0.0371465); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 1675.41
//
Query:       KKY13622.1  [L=498]
Description: putative aldehyde dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     2e-109  366.2   0.0   2.5e-109  365.9   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family
  ------ inclusion threshold ------
       0.14   11.2   0.0       0.21   10.7   0.0    1.2  1  DUF787    Borrelia burgdorferi protein of unknown function (D


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  365.9   0.0  2.8e-113  2.5e-109      23     462 .]      57     490 ..      45     490 .. 0.95

  Alignments for each domain:
  == domain 1  score: 365.9 bits;  conditional E-value: 2.8e-113
                 EE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH..HSEEEEEEC..TT CS
      Aldedh  23 vpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelaek..legevlpss..eg 117
                 ++  +++   +av++A++af+aw+++p+++R+++L+++a+ ++e++  + +++  e+  +   ++ +    ++ ++ +a++++   ++g++ p s  +g
  KKY13622.1  57 FQGTDKDLTLQAVESAQKAFPAWSATPPPQRRALLNALAQKIRENERPIRAMIKEEIHCNDFWTMIQYLGGLSAIEETAAAISSetMNGQI-PYSivPG 154
                 56667777889*****************************************************************999997665477776.55446** PP

                 EEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE-...-SSTCCHHHHHHH-TTESEEEEES CS
      Aldedh 118 klalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvv...tgsgsevgealvehpevdkvsftG 213
                 +  lv++ePlGv++ I+PWN Pl+l+++++++ la+GNtv+lK +e +p + + +a+l++e+g+P+gv+n++   + +  e+ e++++hp v+k +ftG
  KKY13622.1 155 AYPLVFNEPLGVILGIAPWNAPLILSLRAICAPLATGNTVILKGSEFSPRTHYFVANLVREVGFPPGVCNFLlhrPQDAVETFETIISHPAVKKANFTG 253
                 ************************************************************************7776778888999************** PP

                 -HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-TTSTT-SB---S CS
      Aldedh 214 stevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgdpldedtdvGPli 312
                 st vgr ia+ aak lk+v+lElGGkn +ivl+da++d a+++ + +a++n+GQvC+++  +lv++s+++ f ++l +a+k+        ++ +v   i
  KKY13622.1 254 STGVGRAIAQGAAKYLKPVLLELGGKNITIVLDDANIDLAARESLDAATVNNGQVCMSTDTVLVHRSVAESFSAALHNALKATPH-----PELHV---I 344
                 ********************************************************************************88843.....45555...* PP

                 SHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEEEEE-SBHHHHHH CS
      Aldedh 313 seaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaagvftkdleraer 411
                 s++ +++++k+++ea+++gak+   +    +  ++g++   t+++n+++++  +++E FGP+l +  +++e+e++++  ++ yGL+++vf+k+  ra +
  KKY13622.1 345 SSKGRQNLDKLLKEAESHGAKITQAS----PASSSGNLHPATLIENLPSHSIYHTTESFGPLLNIRVVDTEDEIVDLFHESGYGLSGSVFSKNHLRAIN 439
                 ***********************966....889****************************************************************** PP

                 HHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 412 vaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 +a+rl+ G ++iN  +++++ ++p+gGv+ Sg+Gr+gg +gl+e+t++ktv
  KKY13622.1 440 LAKRLDSGAIHINAGSVHDEGNFPHGGVGSSGYGRFGGCWGLREFTKTKTV 490
                 *************************************************98 PP

>> DUF787  Borrelia burgdorferi protein of unknown function (DUF787)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   2.4e-05      0.21     151     223 ..     342     416 ..     325     423 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.4e-05
      DUF787 151 ivistk.eaelkellkdkdksekkriiavyannkdnlhlkfiaaylhqasifhavnpygmilaavpl.vddslid 223
                  vis+k  ++l++llk+ +    k   a  a++  nlh   + + l   si+h+ + +g  l+   +  +d ++d
  KKY13622.1 342 HVISSKgRQNLDKLLKEAESHGAKITQASPASSSGNLHPATLIENLPSHSIYHTTESFGPLLNIRVVdTEDEIVD 416
                 5777773699*************************************************9998654423455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3532.57
//
Query:       KKY13623.1  [L=178]
Description: putative aureobasidin resistance protein aur1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-15   57.1   5.3    2.1e-15   56.9   5.3    1.1  1  PAP2_3    PAP2 superfamily
    2.5e-11   43.5   4.9    3.3e-11   43.1   4.9    1.1  1  PAP2      PAP2 superfamily
  ------ inclusion threshold ------
       0.18   12.4   2.8       0.32   11.5   2.8    1.4  1  PAP2_C    PAP2 superfamily C-terminal


Domain annotation for each model (and alignments):
>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   5.3   3.6e-19   2.1e-15     122     189 ..      39     104 ..       5     105 .. 0.89

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 3.6e-19
      PAP2_3 122 nglaafPSlHvawallvalalwrlrrkrllrvlalllnvlmivatvatgnHYlvDviaGvalalvaia 189
                 + + afPSlH+a a++ al++ +l +k   r++++ ++++++++t+++ +HY+vD+++G +la+v+++
  KKY13623.1  39 QVFGAFPSLHAANATIEALFMSHLFPKL--RPVFVGYVIWLWWSTMYLSHHYAVDLVGGSLLAAVVFY 104
                 44568**********************9..***********************************997 PP

>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   4.9   5.6e-15   3.3e-11      50     128 ..      38     107 ..      16     114 .. 0.88

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 5.6e-15
        PAP2  50 keakesfPSgHsafafalalllalllrrkrkkiglvllalillllavlvalsRlylgvHflsDvlaGlliGialaalay 128
                  +++  fPS H+a+a+  al++++l++++r+          ++ ++++ ++s +yl +H+  D+++G l++++++++++
  KKY13623.1  38 PQVFGAFPSLHAANATIEALFMSHLFPKLRPV---------FVGYVIWLWWSTMYLSHHYAVDLVGGSLLAAVVFYYSK 107
                 367889**************************.........9********************************99865 PP

>> PAP2_C  PAP2 superfamily C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.8   5.4e-05      0.32       8      72 ..      46     106 ..      43     108 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.4e-05
      PAP2_C   8 SGHtvvltlavlfileyspkkla.ilkvillllallglfliiasrkHYtvDVllglyittlvflly 72 
                 S H+++ t+ +lf+ +  pk    ++ ++++l+      + ++  +HY vD + g +++ +vf++ 
  KKY13623.1  46 SLHAANATIEALFMSHLFPKLRPvFVGYVIWLW-----WSTMYLSHHYAVDLVGGSLLAAVVFYYS 106
                 55999999999***9999999743333333333.....33344467****************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1304.10
//
Query:       KKY13624.1  [L=429]
Description: putative metacaspase-1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-61  208.1   0.0    2.4e-61  207.8   0.0    1.1  1  Peptidase_C14  Caspase domain


Domain annotation for each model (and alignments):
>> Peptidase_C14  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.8   0.0   1.4e-65   2.4e-61       1     243 [.     136     421 ..     136     426 .. 0.90

  Alignments for each domain:
  == domain 1  score: 207.8 bits;  conditional E-value: 1.4e-65
                    EEEEEEECSTTSSTCC-STTHHHHHHHHHHHHHHHTTEEEEEEEGGEES.......-CHHHHHHHHHHHHCHSGGTTESEEEEEEESEEET..... CS
  Peptidase_C14   1 kkAliIginnYpgtkaeLrGcanDaermaklLvkrlgFevenililtdd.......ptgknirkalkwlvksadhspgDslvvhysGHGtrvpae. 88 
                    +kAl+Igin Y g++ +LrGc+nD+++m+  L +++g++ e+++iltdd       pt++ni++a++wlvk+a   p+Dsl++hysGHG+++p+  
     KKY13624.1 136 RKALLIGIN-YFGQRGQLRGCINDVKNMSTYLNQNFGYAREDMVILTDDqqnpmsqPTKANILRAMHWLVKDAH--PNDSLFFHYSGHGGQTPDLd 228
                    79*******.997877**********************************************************..**************999989 PP

                    .........EEECTTC..SSEEEHHHHHHTTSTTTHGGGTTS-EEEEEESES.SSBCBEEEEEEES-SSS.......................... CS
  Peptidase_C14  89 .........civpvdv..nsliqdddirdlfggdklpslagkpktiiidaCr.gglldkgiekdtsptnk.......................... 146
                             +i+pvd+   ++i dd++++++ +++l+ ++  ++t+i+d+C+ g++ld ++  +t    k                          
     KKY13624.1 229 gdeddgydeVIYPVDFrtAGHIVDDEMHRIM-VKTLQPGV--RLTAIFDSCHsGSALDLPYIYSTQGVLKepnlakeagqgllsivssyargdvgg 321
                    99***************87777777777777.8*******..***************8888888888888888888899999999999999***** PP

                    .......HCCCHCHHHHHHCSHHCEEECTTTSEEEEESSSTTBSCEEETTTEE...HHHHHHHHHHHHHTTTSBHHHHHHHHHHHHCCTTTCTTSB CS
  Peptidase_C14 147 .......feedssskekkpekqslsklpseadvlllsgcqddqtSadgsengs...aftqalqkvleekggkislkellnkvrkrlkslkkkngyk 232
                           f ++++   +++e+   ++ +s+adv++ sg++d qtS d++  g+   a+++a++ +l+ + + +s+ +lln +r++l s    ++y+
     KKY13624.1 322 masaamgFFKKATTGDSNFERA-KQTKTSPADVIMWSGSKDTQTSQDANIAGQatgAMSWAFINALKRNPH-QSYVQLLNSIRDEL-S----GKYT 410
                    *****99555555555555554.45667899***********************************66666.7*************.3....36** PP

                    EEEEEEEEESS CS
  Peptidase_C14 233 qrPglssndlt 243
                    q+P+ls+++  
     KKY13624.1 411 QKPQLSCSHPL 421
                    *******9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 2726.59
//
Query:       KKY13625.1  [L=1329]
Description: putative 40s ribosomal protein s12 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-25   88.2   0.7    5.3e-25   87.0   0.7    1.7  1  Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 famil
    3.4e-20   72.4   0.0    2.6e-07   31.1   0.0    3.5  3  Ank_2           Ankyrin repeats (3 copies)
    1.4e-19   70.2   0.0    3.5e-07   30.6   0.0    3.7  3  Ank_4           Ankyrin repeats (many copies)
    4.2e-16   58.8   0.3    2.9e-06   27.4   0.1    4.0  4  Ank_5           Ankyrin repeats (many copies)
    1.6e-11   43.3   0.0       0.14   12.8   0.0    5.4  5  Ank_3           Ankyrin repeat
    2.4e-11   43.5   0.1      0.017   15.5   0.0    4.5  4  Ank             Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.7   1.8e-28   5.3e-25       1      94 [.    1213    1307 ..    1213    1308 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 1.8e-28
                      HHHHHHHHHHHHHTEEEESHHHHHHHHHTTTESEEEEETTSSSGGHHHHHHHHHHHTTEEEEEESCHHHHHHHTTSSSE.CSEEEEEESTTTH CS
  Ribosomal_L7Ae    1 daieevlkkakkagklvlGlkevtkalergeaklvilAedvepeekkkllealckekevpyvkvkskkeLGelvgkkrp.vsalaikdegdsk 92  
                      da+++vl+ a+ +++l++Gl+e+ kal+r++a++++l e +e+e +kkl+ alc e+++p++kv++ k+LGe++g+++  ++++a+k++++s+
      KKY13625.1 1213 DALKGVLRIALIHDGLARGLREASKALDRRQAHMCVLNEGCEEEAYKKLVVALCSEHKIPLIKVPDGKQLGEWAGLCVLdREGNARKVVNCSC 1305
                      57899***************************************************************************************9 PP

                      HH CS
  Ribosomal_L7Ae   93 dl 94  
                      ++
      KKY13625.1 1306 VV 1307
                      87 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   8.8e-11   2.6e-07      23      83 .]     329     398 ..     318     398 .. 0.86
   2 !   19.2   0.0   4.5e-07    0.0013      52      80 ..     400     428 ..     397     431 .. 0.89
   3 !   18.0   0.0   1.1e-06    0.0033      20      78 ..     554     624 ..     534     629 .. 0.67

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 8.8e-11
       Ank_2  23 n.k.ngktaLhyAakngnleivklLleh.......adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 n + ng+t L  A+  +++++v++  e+        dn g+tpL++A+ +g+ +iv++Ll k+++++ k+
  KKY13625.1 329 NrDqNGRTRLARACADNKIDVVRAKYEErpedlnvSDNAGNTPLQIASLEGYVDIVEFLLSKNCEVDSKN 398
                 33249************99*******9677786666699*********************9999999875 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 4.5e-07
       Ank_2  52 dgrtpLhyAarsghleivklLlekgadin 80 
                 d +t+L+ A+++gh ++v+lLle+ga++ 
  KKY13625.1 400 DKETALIDAVENGHVDVVQLLLENGANPR 428
                 578***********************986 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 1.1e-06
       Ank_2  20 adpnkngktaLhyAakngnleivklLleh..........ad...ndgr.tpLhyAarsghleivklLl.ekgad 78 
                  +++     a+++Aa++g+++++++L++            +   + g+ tp+ +A+  g++e++klLl + g++
  KKY13625.1 554 EKVH---PAAVIAAARGGHHQTLEMLIALgqpdpdpppvRNgdfKPGYnTPMLAAIGRGNIEVIKLLLgQTGFN 624
                 3444...67999***************94446666666422446335559******99*********9443655 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.2e-10   3.5e-07       2      55 .]     335     388 ..     334     388 .. 0.91
   2 !   26.7   0.0     2e-09   6.1e-06      12      55 .]     379     421 ..     378     421 .. 0.97
   3 !   19.1   0.0     5e-07    0.0015       6      55 .]     562     618 ..     557     618 .. 0.78

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.2e-10
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgad.inaqdnrsGetalhiAakrgnveilklLl 55 
                 +t L +a++++++++vr  +e +++ +n + ++ G+t+l+iA + g+v+i+++Ll
  KKY13625.1 335 RTRLARACADNKIDVVRAKYEERPEdLNVS-DNAGNTPLQIASLEGYVDIVEFLL 388
                 677999**************887555***9.888********************8 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 2e-09
       Ank_4  12 grlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 g +++v++Ll+k+ +++   n++ etal+ A+ +g+v++++lLl
  KKY13625.1 379 GYVDIVEFLLSKNCEVDSK-NIDKETALIDAVENGHVDVVQLLL 421
                 789***************9.***********************8 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 5e-07
       Ank_4   6 hyaaisgrlelvrlLlekg.adinaqdnrs......GetalhiAakrgnveilklLl 55 
                  +aa  g++++++ L++ g +d++  + r+       +t++  A+ rgn+e++klLl
  KKY13625.1 562 IAAARGGHHQTLEMLIALGqPDPDPPPVRNgdfkpgYNTPMLAAIGRGNIEVIKLLL 618
                 567779************75776666445522555555******************8 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   4.1e-08   0.00012      12      56 .]     330     375 ..     327     375 .. 0.94
   2 !   21.8   0.0   5.7e-08   0.00017       4      40 ..     356     392 ..     355     400 .. 0.86
   3 !   27.4   0.1   9.8e-10   2.9e-06       5      55 ..     391     440 ..     387     441 .. 0.89
   4 ?    3.9   0.0     0.024        71      18      49 ..     600     632 ..     590     636 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 4.1e-08
       Ank_5  12 ldgggntpLhvAakygaadvvrlLl.argadlnltdsrGltaldlA 56 
                 +d++g t L  A+  +  dvvr  + +r++dln+ d+ G+t+l++A
  KKY13625.1 330 RDQNGRTRLARACADNKIDVVRAKYeERPEDLNVSDNAGNTPLQIA 375
                 57778899*************************************9 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 5.7e-08
       Ank_5   4 hgpadvnrldgggntpLhvAakygaadvvrlLlarga 40 
                 ++p+d+n +d+ gntpL +A+  g+ d+v++Ll  ++
  KKY13625.1 356 ERPEDLNVSDNAGNTPLQIASLEGYVDIVEFLLSKNC 392
                 4599*****************************5555 PP

  == domain 3  score: 27.4 bits;  conditional E-value: 9.8e-10
       Ank_5   5 gpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldl 55 
                   + v+ ++ +++t+L+ A+++g+ dvv+lLl++ga+++l ++ G+ +++l
  KKY13625.1 391 N-CEVDSKNIDKETALIDAVENGHVDVVQLLLENGANPRLGNAKGDEPYEL 440
                 4.77888888899********************************999997 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.024
       Ank_5  18 tpLhvAakygaadvvrlLl.argadlnltdsrG 49 
                 tp+  A+ +g+ +v++lLl   g +++  d+ G
  KKY13625.1 600 TPMLAAIGRGNIEVIKLLLgQTGFNARRHDGKG 632
                 55555666***********88888877777776 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.082   2.4e+02       1      20 [.     333     352 ..     333     363 .. 0.83
   2 !   12.8   0.0   4.6e-05      0.14       2      30 ..     368     395 ..     367     396 .. 0.91
   3 !   12.0   0.0   8.8e-05      0.26       3      30 ..     402     428 ..     400     429 .. 0.87
   4 ?    0.3   0.0      0.55   1.7e+03       9      28 ..     564     583 ..     562     585 .. 0.80
   5 !    7.6   0.0    0.0022       6.6       2      25 ..     598     621 ..     597     626 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.082
       Ank_3   1 nGetpLhlAarsgnleivkf 20 
                 nG+t L +A+  +++++v++
  KKY13625.1 333 NGRTRLARACADNKIDVVRA 352
                 79**************9986 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4.6e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+tpL +A + g ++iv+fLl  k+++v+
  KKY13625.1 368 GNTPLQIASLEGYVDIVEFLLS-KNCEVD 395
                 9*********************.788775 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 8.8e-05
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadvn 30 
                 et+L  A+++g++++v++Lle +ga+++
  KKY13625.1 402 ETALIDAVENGHVDVVQLLLE-NGANPR 428
                 6777779**************.8**986 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.55
       Ank_3   9 AarsgnleivkfLlenkgad 28 
                 Aar g++  +++L+    +d
  KKY13625.1 564 AARGGHHQTLEMLIALGQPD 583
                 899999999*****955555 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.0022
       Ank_3   2 GetpLhlAarsgnleivkfLlenk 25 
                 ++tp+  A+  gn+e++k+Ll + 
  KKY13625.1 598 YNTPMLAAIGRGNIEVIKLLLGQT 621
                 69******************9854 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   9.9e-06      0.03       2      31 ..     368     398 ..     367     399 .. 0.89
   2 !   15.5   0.0   5.8e-06     0.017       3      28 ..     402     428 ..     400     433 .. 0.88
   3 ?    0.3   0.0      0.37   1.1e+03       9      24 ..     564     580 ..     559     586 .. 0.77
   4 !    6.4   0.0    0.0044        13       4      23 ..     600     620 ..     599     628 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 9.9e-06
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 GnTPL +A+ +g ++i+++LL + +++++++
  KKY13625.1 368 GNTPLQIASLEGYVDIVEFLLsKNCEVDSKN 398
                 9*********9**********6578898887 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 5.8e-06
                 BBHHHHHHHHTTHHHHHHHH.TTTSTT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnln 28 
                  T+L  A+ ng++++++lLL +GAn+ 
  KKY13625.1 402 ETALIDAVENGHVDVVQLLLeNGANPR 428
                 699*****************99***85 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.37
                 HHHHTTHHHHHHHH.TT CS
         Ank   9 AatngkkriiklLL.hG 24 
                 Aa++g+++ +++L+  G
  KKY13625.1 564 AARGGHHQTLEMLIaLG 580
                 679**********9446 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0044
                 BHHHHHHHHTTHHHHHHHH.T CS
         Ank   4 TPLHlAatngkkriiklLL.h 23 
                 TP   A+ +g+ ++iklLL +
  KKY13625.1 600 TPMLAAIGRGNIEVIKLLLgQ 620
                 66556668899********64 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2773  (0.154666); expected 358.6 (0.02)
Passed bias filter:                      641  (0.0357521); expected 358.6 (0.02)
Passed Vit filter:                       251  (0.0139997); expected 17.9 (0.001)
Passed Fwd filter:                        77  (0.00429472); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 2.30u 0.49s 00:00:02.79 Elapsed: 00:00:00.74
# Mc/sec: 5393.65
//
Query:       KKY13626.1  [L=315]
Description: putative ubiquitin c-terminal hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-36  126.1   0.2      2e-36  125.8   0.2    1.0  1  UCH          Ubiquitin carboxyl-terminal hydrolase
    4.2e-21   75.9   1.7      5e-21   75.6   1.7    1.0  1  UCH_1        Ubiquitin carboxyl-terminal hydrolase
  ------ inclusion threshold ------
       0.13   11.7   2.2       0.35   10.3   0.2    2.2  2  zf-ribbon_3  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   0.2   3.3e-40     2e-36      90     257 .]       2     277 ..       1     277 [. 0.93

  Alignments for each domain:
  == domain 1  score: 125.8 bits;  conditional E-value: 3.3e-40
                 GGGTSSSTCEHHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCTTSHHHHHH-EEEEE........................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................... RF
         UCH  90 ksfsgykqqDaqEflaflLdqlhedlnrevaeekwkkhlkrndslitdlfegqlks........................................... 145
                 +s++gy qqDa+E+ ++l+d+lhe++        +k  +   +++ +++f g+l+s                                           
  KKY13626.1   2 PSLAGYAQQDAHEYYQALVDKLHESVTI------NKIIEGPCKCFFHKVFFGRLRStvtcsacgeqrktddpfndlslhmeiqqavkkkekitnaagdv 94 
                 5789**********************98......35566778899****************************************************** PP

                 ....................................EEEEEEB-SEEEEEEESEEETEE..EEE--SEEB--SEEE-GGGBSS-BTTS-TCS-B..... CS
                 ....................................xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
         UCH 146 ....................................klklkrlPeiLiihlkRfsynss..ksKlntkvefpeeldlssylaeekkkkteekkk..... 201
                                                     +lkl +lP+iL++++kRf  + +  ++K++ kv+fp++ld+++y++ +++++ +   +     
  KKY13626.1  95 qrsaptlqscldaytskekllatcktcgniskpatkQLKLRKLPAILCMQMKRFDTSTKseSHKIEGKVDFPLTLDMTPYTTPHAATQLDLTSSspnst 193
                 *******************************************************977778*******************99998888777666999** PP

                 ........EEEEEEEEEESCTTSEEEEEEEECTTTTE....................EEEEETTEEEEE-HHCCCTT.CEEEEEE CS
                 ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
         UCH 202 ........YeLiavvvHsGslssGHYvayiknekngk....................WykydDetvkevkeeeevls.sayiLfY 257
                         Y+L++v+vH+Gsl+sGHY+ay+++++++                     Wy ++D++v+  + + evl  +ay+LfY
  KKY13626.1 194 iphsqrfvYDLTSVIVHKGSLDSGHYYAYCRESHHHPqnpslqpptdtdgptmtrehWYLFNDDRVTLATTQ-EVLAaDAYLLFY 277
                 *******************************4444448899*****************************77.89999******* PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   1.7   8.3e-25     5e-21     110     318 ..      20     257 ..       8     259 .. 0.73

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 8.3e-25
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.....xxxx........xxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 110 ldqlekelketkknsseeesaieqllgtkaettirclkCgseksrksstlvldlkyP.k.....psne........kkeakvtfasilksslerekttr 194
                 +d+l++  + +k  + + +  +++++  ++ +t++c+ Cg++++ ++ +  l+l    +     +  e         + +  t++s+l +  ++ek   
  KKY13626.1  20 VDKLHESVTINKIIEGPCKCFFHKVFFGRLRSTVTCSACGEQRKTDDPFNDLSLHMEiQqavkkK--EkitnaagdVQRSAPTLQSCLDAYTSKEKL-L 115
                 55555555555555555566678889999***********************9977453455430..246677777445558999999999999555.5 PP

                 xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx..xxxxxxxxxxxxxxxxxx....xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 195 awCekC.kryqpteqrktvknlPpvLalnakle.eeeelelwkt..knwlpleiklsldedknl....eeklkee.rekakaekeikvYeLqsvvvhig 284
                 a+C++C +  +p +++ ++++lP++L++++k++ ++++ e  k   k  +pl ++++ +         +  l+++ ++++  +++ +vY+L+sv+vh g
  KKY13626.1 116 ATCKTCgNISKPATKQLKLRKLPAILCMQMKRFdTSTKSESHKIegKVDFPLTLDMTPYTTPHAatqlD--LTSSsPNSTIPHSQRFVYDLTSVIVHKG 212
                 ******999**********************99666555555543356677777776555554466432..333303335677899************* PP

                 xxxxxxxxxxxxxxxxxxxxx.........xxxxx......xxxxxxxx RF
       UCH_1 285 dskesghLvslvkvaekeler.........dppes......qWylFNDf 318
                  s +sgh++++++ +++  ++         d   +      +WylFND 
  KKY13626.1 213 -SLDSGHYYAYCRESHHHPQNpslqpptdtD---GptmtreHWYLFNDD 257
                 .878*********877777769998766651...0445677*******5 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   5.9e-05      0.35       1      17 [.      51      67 ..      51      68 .. 0.81
   2 ?    0.6   0.1     0.068     4e+02       4      10 ..     117     123 ..     115     129 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5.9e-05
  zf-ribbon_3  1 stvrCPnCGaplssddn 17
                 stv+C++CG++ ++dd+
   KKY13626.1 51 STVTCSACGEQRKTDDP 67
                 699*******7577776 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.068
  zf-ribbon_3   4 rCPnCGa 10 
                  +C  CG+
   KKY13626.1 117 TCKTCGN 123
                  4666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 1961.60
//
Query:       KKY13641.1  [L=361]
Description: putative zinc-binding [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-26   90.7   5.2    7.9e-26   90.1   5.2    1.3  1  ADH_N         Alcohol dehydrogenase GroES-like domain
    4.3e-18   65.5   0.0    2.9e-17   62.9   0.0    2.1  2  ADH_zinc_N    Zinc-binding dehydrogenase
    0.00011   21.6   0.1    0.00024   20.5   0.1    1.4  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
    0.00014   23.0   0.0    0.00023   22.2   0.0    1.3  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.021   14.5   0.0      0.034   13.8   0.0    1.3  1  ApbA          Ketopantoate reductase PanE/ApbA
      0.053   12.8   0.0       0.18   11.1   0.0    1.8  2  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   5.2   2.6e-29   7.9e-26       3     108 ..      35     149 ..      33     150 .. 0.87

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 2.6e-29
                 EEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE.-SSSHHHHTT-GGG-.........TTBEETTTS. CS
       ADH_N   3 evlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvveplis.cgeCaaCkegeenlC.........eeakllgvs. 90 
                 +v ikv+a+giC sD+h+++g  +  +++p+ +GHEivG+ + vg++v+k+k G+rV   ++   cgeC++Ck+g+en+C         +  k+ g++ 
  KKY13641.1  35 DVDIKVEACGICYSDIHTISG-GWGAQNFPICVGHEIVGTAVRVGNRVTKIKQGERVGQGAQCFsCGECKQCKHGNENYCpvikidtygD--KYPGTDv 130
                 799******************.69*********************************99766544***************7777776333..3333336 PP

                 .S-SSSBSEEEECGGGEEE CS
       ADH_N  91 .ldGgfaeyvvvpekklvk 108
                   +Gg+a+y+ ++e+ +++
  KKY13641.1 131 tSSGGYANYTRAHENWVFP 149
                 69************99987 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0   9.7e-21   2.9e-17       1     129 [.     191     316 ..     191     317 .. 0.88
   2 ?   -0.2   0.0       0.3   8.9e+02      39      72 ..     329     359 ..     325     361 .] 0.82

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 9.7e-21
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHH..HHHHCEEEEEEEEECSC.TSSEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatle..aalkllkpgGrlvvvGg.gkgeee 96 
                 g+G++++ +AkalGaev a+++s+ k + akklGad +i ++     e+ +e  ++  +dvv++++ s + ++   +l++++ +G++  vG+  +++ +
  KKY13641.1 191 GIGHFGLIFAKALGAEVWAISRSRAKEADAKKLGADGFIATS-----EKDWEVPHKFSFDVVINTSSSYENFDlaKYLSMMDVHGKFISVGLpEEEGIV 284
                 8****************************************4.....45667777889*********8777752278***************5555555 PP

                 EEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  97 fdlrnlllkeksilGsllgslreefkealdlla 129
                 +++++l+ + +s+  s+ g+ ree  ++l+l+a
  KKY13641.1 285 IKAQDLIPNGVSLSTSHIGN-REEAFQMLKLAA 316
                 ********************.888888999876 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.3
                 EETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHH CS
  ADH_zinc_N  39 inykeadlverikeltggegvdvvfecvGsgatl 72 
                 in+k  +l+++++++  +++v + f  vG+++ +
  KKY13641.1 329 INQK--NLEDALQRMA-KNDVRYRFCLVGHEKEF 359
                 5663..69999****9.89****99999988776 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1     8e-08   0.00024      36      80 ..     181     225 ..     178     233 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 8e-08
                   TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTC CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgv 80 
                   gk+vGi+G+G IG+     +ka+g++v a++rs+ ke+++++lg+
    KKY13641.1 181 GKKVGILGIGGIGHFGLIFAKALGAEVWAISRSRAKEADAKKLGA 225
                   89*******************************998887777765 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   7.6e-08   0.00023       1     126 [.     223     345 ..     223     347 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 7.6e-08
                   TT-SEEEETTSTTHHHHH-TT-EEEEEES-H...HHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHH CS
  ADH_zinc_N_2   1 lGAdevidyrtedfeaatggegvDvvldtvg...gealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileela 94 
                   lGAd +i   ++d+e +  + ++Dvv++t     + +l ++ l++++ +G+++s+g p   +++  +a++    +  +++ +s    ++++   +++
    KKY13641.1 223 LGADGFIATSEKDWE-VPHKFSFDVVINTSSsyeNFDL-AKYLSMMDVHGKFISVGLP-EEEGIVIKAQDL--IPNGVSLSTSHIG-NREE-AFQML 312
                   8******9999***8.555668*******998765555.8888888999*******64.344444444433..3333333332233.3777.999** PP

                   HHHHHHH----EEEE.EEGGGHHHHHHHHHSS- CS
  ADH_zinc_N_2  95 alieeGklrpvvdrv.fpleeaaeAhrylesgr 126
                   +l +++kl+p ++ v    +++ +A+++++++ 
    KKY13641.1 313 KLAADKKLEPWIENVeINQKNLEDALQRMAKND 345
                   *************98888999*******99876 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.1e-05     0.034       1      71 [.     184     259 ..     184     260 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.1e-05
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETTCEEEEEECEEECCH....SCCCCS-ESE CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseggeeilrppealsae....ekselepidl 71 
                 + ilG+G+iG +     ++ ga+v+ i rsr + ++ kk G +  + + e+ +++p+++s++    ++s+ e++dl
  KKY13641.1 184 VGILGIGGIGHFGLIFAKALGAEVWAISRSRaKEADAKKLGADGFIATSEKDWEVPHKFSFDvvinTSSSYENFDL 259
                 579******98755555449***********777779**9999999999999*99999999988887777777776 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     6e-05      0.18      30      79 ..     183     233 ..     174     268 .. 0.77
   2 ?   -2.1   0.0      0.63   1.9e+03     150     196 ..     280     326 ..     277     337 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6e-05
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTC.ECEEHC CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgak.fvevlk 79 
                  kv ++G G  G   +  ak+lga+V ++  + a+    ++lga  f+ + +
   KKY13641.1 183 KVGILGIGGIGHFGLIFAKALGAEVWAISRSRAKEADAKKLGADgFIATSE 233
                  799*************************************99872333322 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.63
                  ETTEEEEEBSTGGGGSHHHHHHHHHHHHHHHHHHHCHHHTCCHHHCT CS
  AlaDh_PNT_C 150 ekgvvhygvanlpgavprtasalltnntlpyleelladkglkkalke 196
                  e+g+v+ ++  +p  v+   s++ +++    +++l+adk+l+  +++
   KKY13641.1 280 EEGIVIKAQDLIPNGVSLSTSHIGNREEAFQMLKLAADKKLEPWIEN 326
                  68999999999999999999998888877777777799998544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2407.41
//
Query:       KKY13642.1  [L=170]
Description: putative iron-sulfur cluster-binding rieske family domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00017   21.6   0.0    0.00024   21.1   0.0    1.2  1  Ring_hydroxyl_A  Ring hydroxylating alpha subunit (catalytic 
  ------ inclusion threshold ------
      0.095   13.0   0.0         12    6.3   0.0    2.3  2  KIX              KIX domain


Domain annotation for each model (and alignments):
>> Ring_hydroxyl_A  Ring hydroxylating alpha subunit (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.7e-08   0.00024     104     209 ..      20     126 ..       3     131 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.7e-08
                      EEEEEETTTEEEE..TTTTEEEEEEESSTT-EEEEEEEEEETT...S-HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHHTTSTTTSBSCCCSC CS
  Ring_hydroxyl_A 104 alhftifPnlsillapdhvvifrviPtgpettevelealvppdat.aseelkeelaavvdrtfgvveeeDaelceevQqglrsrgyepgpvlsr 196
                      a+  +++P  +i+++ + ++i r+   ++  t ++ e++ ++ +   +  +++e+ ++  +    ve+eD+el+   Q+g+r++++ +g++ s 
       KKY13642.1  20 AYITWLYPLGVITFSENLLFIGRFTANSALNTSYDSETYRRKSRIpSQGPIHDEWMEHEIAYWRLVEKEDVELAIDAQKGFRNGVLARGRLHSV 113
                      56678888888888888888888888888888888888888887742233344444444433346*************************9999 PP

                      SSHHHHHHHHHHH CS
  Ring_hydroxyl_A 197 qEeavrhFhewvr 209
                      +E av+ ++++vr
       KKY13642.1 114 EEHAVKWYQDKVR 126
                      9999998888887 PP

>> KIX  KIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0013        12      30      61 ..      65      96 ..      63     104 .. 0.87
   2 ?    4.4   0.0    0.0052        47      20      43 ..     140     163 ..     134     165 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0013
         KIX 30 pdqealnDkRmeelieyarkvEkeafekakdr 61
                p q  ++D+ me+ i+y r vEke  e a+d 
  KKY13642.1 65 PSQGPIHDEWMEHEIAYWRLVEKEDVELAIDA 96
                5677789*****************99999886 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0052
         KIX  20 dKlvkaifPapdqealnDkRmeel 43 
                  K+v  ++P+ + +a +D  + +l
  KKY13642.1 140 GKIVDYAIPEQQRNADQDDELCRL 163
                 59****************988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1169.85
//
Query:       KKY13643.1  [L=1041]
Description: putative ankyrin repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-41  140.0   3.1    1.4e-12   48.0   0.2    5.0  5  Ank_2     Ankyrin repeats (3 copies)
    2.6e-36  123.5   7.2    5.4e-11   42.8   0.1    7.0  7  Ank_4     Ankyrin repeats (many copies)
    6.5e-30   99.8   0.1    0.00083   19.6   0.0    9.2  9  Ank_3     Ankyrin repeat
      2e-27   94.4   8.4      3e-05   24.3   0.0    8.7  8  Ank       Ankyrin repeat
    2.4e-22   78.7   5.7    2.8e-07   30.7   0.0    6.4  7  Ank_5     Ankyrin repeats (many copies)
    2.1e-11   43.7   0.7    4.8e-11   42.5   0.2    1.9  2  CorA      CorA-like Mg2+ transporter protein
  ------ inclusion threshold ------
       0.17   10.6   0.0       0.27    9.9   0.0    1.2  1  DUF2207   Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   4.5e-11   1.1e-07       2      83 .]      17     111 ..      16     111 .. 0.81
   2 !   16.7   0.0   3.2e-06    0.0082      50      82 ..     111     143 ..     110     144 .. 0.90
   3 !   34.0   0.0   1.3e-11   3.3e-08      18      82 ..     175     252 ..     144     253 .. 0.82
   4 !   40.3   0.1   1.4e-13   3.5e-10      25      82 ..     222     285 ..     217     286 .. 0.85
   5 !   48.0   0.2   5.4e-16   1.4e-12       1      72 [.     260     342 ..     260     348 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 4.5e-11
       Ank_2   2 hlAakngnlelvklLlegadpn....k.ngktaLhyAakngnleivklLleh...ad.ndgrtpLhyAars....ghleivklLlekgadinlkd 83 
                 +  ak+gn+++v++Ll+   p+    + +   aL+ Aa +gn e+vk+Lle    +d  +g+++L+++++     ++l i++l+l++gad+n++d
  KKY13643.1  17 IKVAKSGNSSTVQQLLQLEAPRrpptEnDLAIALQRAAGAGNAETVKALLEVgakVDgPKGKSALFVSIETqtkrSRLAIIRLFLQYGADVNARD 111
                 5678999999******4433333333235589******************9565688999*********997655599**************997 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 3.2e-06
       Ank_2  50 dndgrtpLhyAarsghleivklLlekgadinlk 82 
                 d dg+tp++ Aa  g+ ++v lLle+ga++++ 
  KKY13643.1 111 DHDGWTPMISAALRGQNDAVALLLERGANPDAV 143
                 578*********99*99***********99876 PP

  == domain 3  score: 34.0 bits;  conditional E-value: 1.3e-11
       Ank_2  18 egadpn..k.ngktaLhyAakngnleivklLle.h.........adndgrtpLhyAarsghleivklLlekgadinlk 82 
                 + +d++  + + +t+L +Aa +g+l+++ +L+  h         a+ +g+tpLh+Aa ++h+ + ++L+ +gadi++k
  KKY13643.1 175 KVTDLDylDrWMRTPLSCAAAHGKLDLLGALIRgHgtkkacigiANAKGQTPLHVAADNNHPGVTRFLVLQGADIEAK 252
                 4466665436779*******************8646667888888899*********************88****987 PP

  == domain 4  score: 40.3 bits;  conditional E-value: 1.4e-13
       Ank_2  25 ngktaLhyAakngnleivklLleh.ad.....ndgrtpLhyAarsghleivklLlekgadinlk 82 
                 +g+t+Lh+Aa n++  + ++L+ + ad     +  +tpL +Aa++gh+e+++ Ll ++a++n++
  KKY13643.1 222 KGQTPLHVAADNNHPGVTRFLVLQgADieaksDGDWTPLLNAAKKGHEEVIDALLSSKANVNAQ 285
                 69**************9*****87734445557788*******************9899*9986 PP

  == domain 5  score: 48.0 bits;  conditional E-value: 5.4e-16
       Ank_2   1 LhlAakngnlelvklLl.egadpn.k..ngktaLhyAakngnleivklLleh.......adndgrtpLhyAarsghleivklL 72 
                 L  Aak+g+ e+++ Ll ++a++n +   g+t Lh+Aa+ng+l++v+ +l++        d    tpL+ Aa++++ eiv+ L
  KKY13643.1 260 LLNAAKKGHEEVIDALLsSKANVNaQtsSGMTSLHWAAENGHLKAVRRILQEpnvwtnaKDAFDSTPLIRAAQHDYMEIVEAL 342
                 5689****9********99999998457**********************966687444447799****************98 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0094        24       4      55 .]      15      66 ..       9      66 .. 0.74
   2 !   27.9   0.0     1e-09   2.6e-06      11      47 ..      91     126 ..      79     127 .. 0.90
   3 !   12.3   0.1   7.6e-05      0.19      11      41 ..     124     153 ..     122     161 .. 0.91
   4 !   22.5   0.0   4.7e-08   0.00012       2      55 .]     187     243 ..     186     243 .. 0.88
   5 !   32.1   0.0   4.8e-11   1.2e-07       3      55 .]     225     276 ..     223     276 .. 0.96
   6 !   42.8   0.1   2.1e-14   5.4e-11       3      52 ..     258     306 ..     257     309 .. 0.95
   7 !   28.6   0.0   5.9e-10   1.5e-06       1      54 [.     289     342 ..     289     343 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0094
       Ank_4  4 aLhyaaisgrlelvrlLlekgadinaqdnrsGe..talhiAakrgnveilklLl 55
                +L + a+sg+  +v+ Ll+   +  ++++ + +   al++Aa  gn e +k Ll
  KKY13643.1 15 TLIKVAKSGNSSTVQQLLQL--EAPRRPPTENDlaIALQRAAGAGNAETVKALL 66
                45556669999999999986..44477665555245***************997 PP

  == domain 2  score: 27.9 bits;  conditional E-value: 1e-09
       Ank_4  11 sgrlelvrlLlekgadinaqdnrsGetalhiAakrgn 47 
                  +rl ++rl l++gad+na+ + +G+t+++ Aa+rg+
  KKY13643.1  91 RSRLAIIRLFLQYGADVNAR-DHDGWTPMISAALRGQ 126
                 78999***************.**************95 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 7.6e-05
       Ank_4  11 sgrlelvrlLlekgadinaqdnrsGetalhi 41 
                  g+ ++v+lLle+ga+++a+ + + ++ lh 
  KKY13643.1 124 RGQNDAVALLLERGANPDAV-DHNSRNVLHL 153
                 6899****************.********96 PP

  == domain 4  score: 22.5 bits;  conditional E-value: 4.7e-08
       Ank_4   2 ltaLhyaaisgrlelvrlLl...ek.gadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +t+L  aa++g+l+l+  L+    + +a i    n+ G+t+lh Aa ++++ ++++L+
  KKY13643.1 187 RTPLSCAAAHGKLDLLGALIrghGTkKACIGIA-NAKGQTPLHVAADNNHPGVTRFLV 243
                 79******************9663325778886.**********************96 PP

  == domain 5  score: 32.1 bits;  conditional E-value: 4.8e-11
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+Lh aa  ++  + r+L+ +gadi a  ++ ++t+l +Aak+g+ e++  Ll
  KKY13643.1 225 TPLHVAADNNHPGVTRFLVLQGADIEAK-SDGDWTPLLNAAKKGHEEVIDALL 276
                 89*************************9.999****************99997 PP

  == domain 6  score: 42.8 bits;  conditional E-value: 2.1e-14
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilk 52 
                 t+L +aa++g++e+++ Ll+++a++naq  +sG+t lh Aa +g++++++
  KKY13643.1 258 TPLLNAAKKGHEEVIDALLSSKANVNAQ-TSSGMTSLHWAAENGHLKAVR 306
                 89**************************.999**************9997 PP

  == domain 7  score: 28.6 bits;  conditional E-value: 5.9e-10
       Ank_4   1 eltaLhyaaisgrlelvrlLlekgadinaq...dnrsGetalhiAakrgnveilklL 54 
                 ++t Lh+aa+ g+l++vr++l+   ++n +   +++ + t+l++Aa++ + ei++ L
  KKY13643.1 289 GMTSLHWAAENGHLKAVRRILQ---EPNVWtnaKDAFDSTPLIRAAQHDYMEIVEAL 342
                 5899*****************8...89999555667799***************988 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.2   5.6e+03       8      23 ..      18      33 ..      16      37 .. 0.83
   2 !    7.4   0.0    0.0031         8       5      30 ..      49      73 ..      49      74 .. 0.91
   3 ?    5.2   0.0     0.016        40      14      31 .]      93     109 ..      77     109 .. 0.84
   4 !   12.7   0.0   5.8e-05      0.15       1      31 []     113     142 ..     113     142 .. 0.95
   5 !   10.5   0.0    0.0003      0.77       3      26 ..     187     210 ..     185     213 .. 0.92
   6 !   19.6   0.0   3.2e-07   0.00083       2      30 ..     223     250 ..     222     251 .. 0.94
   7 !   15.0   0.0   1.1e-05     0.027       3      31 .]     257     284 ..     255     284 .. 0.94
   8 !   15.1   0.0   9.6e-06     0.025       2      27 ..     289     314 ..     288     318 .. 0.88
   9 ?    0.7   0.0      0.47   1.2e+03       4      21 ..     325     342 ..     322     346 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.2
       Ank_3  8 lAarsgnleivkfLle 23
                 +a+sgn + v+ Ll+
  KKY13643.1 18 KVAKSGNSSTVQQLLQ 33
                58999***99****98 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0031
       Ank_3  5 pLhlAarsgnleivkfLlenkgadvn 30
                +L +Aa +gn e vk+Lle  ga v+
  KKY13643.1 49 ALQRAAGAGNAETVKALLE-VGAKVD 73
                6899***************.899886 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.016
       Ank_3  14 nleivkfLlenkgadvna 31 
                 +l+i++++l+ +gadvna
  KKY13643.1  93 RLAIIRLFLQ-YGADVNA 109
                 4579******.*****96 PP

  == domain 4  score: 12.7 bits;  conditional E-value: 5.8e-05
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvna 31 
                 +G+tp+  Aa+ g  + v +Lle +ga+++a
  KKY13643.1 113 DGWTPMISAALRGQNDAVALLLE-RGANPDA 142
                 69*********************.9***985 PP

  == domain 5  score: 10.5 bits;  conditional E-value: 0.0003
       Ank_3   3 etpLhlAarsgnleivkfLlenkg 26 
                 +tpL +Aa +g+l+++ +L++ +g
  KKY13643.1 187 RTPLSCAAAHGKLDLLGALIRGHG 210
                 8********************777 PP

  == domain 6  score: 19.6 bits;  conditional E-value: 3.2e-07
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+tpLh+Aa ++++ + +fL+   gad+ 
  KKY13643.1 223 GQTPLHVAADNNHPGVTRFLVL-QGADIE 250
                 9*********************.9***96 PP

  == domain 7  score: 15.0 bits;  conditional E-value: 1.1e-05
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadvna 31 
                 +tpL  Aa+ g+ e++++Ll    a+vna
  KKY13643.1 257 WTPLLNAAKKGHEEVIDALLS-SKANVNA 284
                 8********************.8999996 PP

  == domain 8  score: 15.1 bits;  conditional E-value: 9.6e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkga 27 
                 G+t Lh+Aa++g+l+ v+ +l+++++
  KKY13643.1 289 GMTSLHWAAENGHLKAVRRILQEPNV 314
                 99*******************97766 PP

  == domain 9  score: 0.7 bits;  conditional E-value: 0.47
       Ank_3   4 tpLhlAarsgnleivkfL 21 
                 tpL +Aa ++  eiv++L
  KKY13643.1 325 TPLIRAAQHDYMEIVEAL 342
                 9************99998 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.11   2.7e+02       5      27 ..      49      72 ..      48      73 .. 0.82
   2 !   11.8   0.0   9.9e-05      0.25       3      31 ..      78     111 ..      76     112 .. 0.69
   3 !   17.3   0.0   1.9e-06    0.0048       1      31 [.     113     144 ..     113     145 .. 0.93
   4 !    6.9   0.2    0.0036       9.2       3      27 ..     187     216 ..     186     221 .. 0.85
   5 !   24.3   0.0   1.2e-08     3e-05       2      31 ..     223     253 ..     222     254 .. 0.92
   6 !   16.4   0.0   3.6e-06    0.0092       3      31 ..     257     286 ..     256     287 .. 0.90
   7 !    8.4   0.0    0.0012       3.1       2      24 ..     289     311 ..     288     321 .. 0.74
   8 ?    2.6   0.0     0.081   2.1e+02       4      21 ..     325     342 ..     324     357 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.11
                HHHHHHHHTTHHHHHHHH.TTTST CS
         Ank  5 PLHlAatngkkriiklLL.hGAnl 27
                +L +Aa  g+++ +k+LL  GA +
  KKY13643.1 49 ALQRAAGAGNAETVKALLeVGAKV 72
                6778999999********558865 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 9.9e-05
                 BBHHHHHH.......HHTTHHHHHHHH.TTTSTTCBT CS
         Ank   3 nTPLHlAa.......tngkkriiklLL.hGAnlnald 31 
                  ++L + +       +   + ii+l+L +GA++na+d
  KKY13643.1  78 KSALFVSIetqtkrsR---LAIIRLFLqYGADVNARD 111
                 5566665465543333...45******77*******9 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 1.9e-06
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 dG+TP   Aa +g+ + + lLL +GAn++a+d
  KKY13643.1 113 DGWTPMISAALRGQNDAVALLLeRGANPDAVD 144
                 8*********888888******99******99 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0036
                 BBHHHHHHHHTTHHHHHHHH..TT...TST CS
         Ank   3 nTPLHlAatngkkriiklLL..hG...Anl 27 
                 +TPL +Aa  gk++ + +L+  hG   A++
  KKY13643.1 187 RTPLSCAAAHGKLDLLGALIrgHGtkkACI 216
                 6******999**********8888777776 PP

  == domain 5  score: 24.3 bits;  conditional E-value: 1.2e-08
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G TPLH+Aa n+++ ++++L+ +GA++ a+ 
  KKY13643.1 223 GQTPLHVAADNNHPGVTRFLVlQGADIEAKS 253
                 99*******999999*****99*****9975 PP

  == domain 6  score: 16.4 bits;  conditional E-value: 3.6e-06
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnald 31 
                 +TPL  Aa  g++++i +LL + An+na++
  KKY13643.1 257 WTPLLNAAKKGHEEVIDALLsSKANVNAQT 286
                 7999999*************556*****98 PP

  == domain 7  score: 8.4 bits;  conditional E-value: 0.0012
                 SBBHHHHHHHHTTHHHHHHHHTT CS
         Ank   2 GnTPLHlAatngkkriiklLLhG 24 
                 G+T LH+Aa ng++  ++ +L+ 
  KKY13643.1 289 GMTSLHWAAENGHLKAVRRILQE 311
                 9***********98888777754 PP

  == domain 8  score: 2.6 bits;  conditional E-value: 0.081
                 BHHHHHHHHTTHHHHHHH CS
         Ank   4 TPLHlAatngkkriiklL 21 
                 TPL +Aa+ +  +i+++L
  KKY13643.1 325 TPLIRAAQHDYMEIVEAL 342
                 9******999999**998 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.23     6e+02      21      52 ..      51      80 ..      31      81 .. 0.81
   2 !   12.6   0.0   5.2e-05      0.13      28      53 ..      93     118 ..      90     121 .. 0.89
   3 !   18.9   0.4   5.4e-07    0.0014       2      53 ..     101     151 ..     100     154 .. 0.89
   4 ?    1.3   0.0      0.18   4.6e+02       8      36 ..     178     206 ..     177     210 .. 0.84
   5 !   22.4   0.0   4.4e-08   0.00011      15      53 ..     222     260 ..     218     263 .. 0.93
   6 ?    4.1   0.0     0.023        60      13      39 ..     254     281 ..     252     284 .. 0.82
   7 !   30.7   0.0   1.1e-10   2.8e-07       7      56 .]     280     330 ..     275     330 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.23
       Ank_5 21 hvAakygaadvvrlLlargadlnltdsrGlta 52
                  Aa +g+a+ v+ Ll  ++ +++    G++a
  KKY13643.1 51 QRAAGAGNAETVKALL--EVGAKVDGPKGKSA 80
                569*************..88888777777666 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 5.2e-05
       Ank_5  28 aadvvrlLlargadlnltdsrGltal 53 
                 ++ ++rl+l +gad n++d +G+t++
  KKY13643.1  93 RLAIIRLFLQYGADVNARDHDGWTPM 118
                 788999999****************8 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 5.4e-07
       Ank_5   2 lehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 l++g advn++d +g tp++ Aa +g  d v lLl+rga++++ d + +++l
  KKY13643.1 101 LQYG-ADVNARDHDGWTPMISAALRGQNDAVALLLERGANPDAVDHNSRNVL 151
                 6788.9************************************9996556665 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.18
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLl 36 
                 d+++ld++  tpL  Aa +g +d++  L+
  KKY13643.1 178 DLDYLDRWMRTPLSCAAAHGKLDLLGALI 206
                 6788898888************9986665 PP

  == domain 5  score: 22.4 bits;  conditional E-value: 4.4e-08
       Ank_5  15 ggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 +g+tpLhvAa ++++ v r+L+  gad+ ++ +  +t+l
  KKY13643.1 222 KGQTPLHVAADNNHPGVTRFLVLQGADIEAKSDGDWTPL 260
                 689*****************************888**98 PP

  == domain 6  score: 4.1 bits;  conditional E-value: 0.023
       Ank_5  13 dgggntpLhvAakygaadvvrlLl..arg 39 
                 dg++ tpL +Aak+g+ +v+  Ll  + +
  KKY13643.1 254 DGDW-TPLLNAAKKGHEEVIDALLssKAN 281
                 6777.************999999966555 PP

  == domain 7  score: 30.7 bits;  conditional E-value: 1.1e-10
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLl.argadlnltdsrGltaldlA 56 
                 a+vn++   g+t Lh+Aa++g++  vr++l ++++ +n++d+  +t+l  A
  KKY13643.1 280 ANVNAQTSSGMTSLHWAAENGHLKAVRRILqEPNVWTNAKDAFDSTPLIRA 330
                 89*********************************************9765 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.4   3.6e+03      34      82 ..     597     647 ..     585     652 .. 0.73
   2 !   42.5   0.2   1.9e-14   4.8e-11     123     282 ..     795     962 ..     758     974 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.4
        CorA  34 lldseerprve.dyddylllvlpsveldkseeeeeev.plsillgdnflit 82 
                  ld+ ++ +++ + +d+  +v + ++ + +e + ++v +l++++  ++lit
  KKY13643.1 597 TLDQFKHHSFDtEQQDTDQVVWRWCKDTRQELKIYMVdQLWVWVIGDLLIT 647
                 455555555665788888888888888888888888888888888888888 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 1.9e-14
        CorA 123 lfellekleeeldeledeledstkkeilrelaq.lr........rrlvklrralapnrevlkrllakaddkllddedkeylrdlldelerllemlealr 212
                 l+++ +++ eel  l++ l  ++++ ilr+l +  r        +r+  l +++ ++r+v ++l +    +++++++    + + d+l ++l+  +  +
  KKY13643.1 795 LLAECRDIQEELGILSNVL--EQQRLILRDLEEvFRrsllvpheERVELLGKVVQQQRQVDSQLAD---IDRMNRQA----KSVNDNLGQVLDLKQKHA 884
                 4555566666666666666..333333333333111111112224455556666666666644444...77777775....899999999999999999 PP

        CorA 213 erleslqdtyssllserlNrvmkvLTvltaiflPlTlitGiyGmNfkglP........elewsygypfvlllglmall 282
                 + le  ++ ++++ + ++ +++ v+Tv+t+iflP++++++++  N+ + P        +l+ +++  +v+ +gl++ +
  KKY13643.1 885 NALEARFQRFQAQGTAKQSQTIMVFTVVTIIFLPMSFLASFFTLNIIEFPhdsnyggnGLHLGWVVKYVIGIGLAVSI 962
                 99999999999999999*********************************8888888866666666666555555444 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00011      0.27     317     429 ..     834     966 ..     785     992 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00011
     DUF2207 317 pyEkalldlLfdkseeg.ks......lkeikkyakkskkkakkfkkalkkwksavkkkergyfdkkgkkklkklsalglgliilgl.ilillallllvl 407
                 p+E+++ +lL ++++++ ++      +++++++ak+ +++  ++ + ++k ++a+++ + + f+++g +k+   +++ ++++i++l + +l+++++l++
  KKY13643.1 834 PHEERV-ELLGKVVQQQrQVdsqladIDRMNRQAKSVNDNLGQVLDLKQKHANALEA-RFQRFQAQGTAKQSQTIMVFTVVTIIFLpMSFLASFFTLNI 930
                 555555.55555555554445677778888888888888999999999999999999.66666666666655555555555555550444445555555 PP

     DUF2207 408 l..................lvfllilllillliaiivlll 429
                 +                  +     ++++++l+++i l+ 
  KKY13643.1 931 IefphdsnyggnglhlgwvV----KYVIGIGLAVSIPLVG 966
                 599*********99977542....2222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1041 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1018  (0.0567795); expected 358.6 (0.02)
Passed bias filter:                      652  (0.0363657); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.46
# Mc/sec: 6869.72
//
Query:       KKY13644.1  [L=388]
Description: putative catechol o-methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-15   57.6   0.2    2.9e-13   49.6   0.2    2.4  1  Methyltransf_2  O-methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.2   1.6e-17   2.9e-13      65     208 ..     236     363 ..     172     365 .. 0.77

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 1.6e-17
                     EEEEET-TTSHHHHHHHHH-TT-E...EEEEE-HHHHHHHHHHS-----TTEEEEES-TTTS-----SEEEEESSGGGS-HHHHHHHHHHHHHH- CS
  Methyltransf_2  65 slvDvGGGtGalakaivsayPtik...vivfDlpeVveaAkehlsageeervefvgGdffkdslPeaDaillkrvlhDwsdekcvklLkrvkkal 156
                     ++vDvGGG G ++ +iv+a P +    ++v D+ +V+e A+               G  f      a a+ +  + hD+sd+++ ++L ++ ka+
      KKY13644.1 236 QIVDVGGGFGKVLTEIVQATPALDpeyCVVQDVGNVIEIAHAA------------RG--F-----GARAYYMRFISHDYSDHDIINILGHIAKAM 311
                     79*******************98645589999****9999877............22..5.....699*************************** PP

                     -TT-EEEEEE----TTS---HHHHHH.HHHHHHCSS-----HHHHHHHHHHCT CS
  Methyltransf_2 157 pagGkvivveavlgadpsgeletelv.dlimlvqteGkeRteaeyeellseaG 208
                      ++ k++++++v++ + ++++ t +v d  +++  +GkeRte  ++++l++ G
      KKY13644.1 312 ASDSKLLLADCVIPGRLRESTVTAGVlD-QLMFCIGGKERTEGGFKSILGAKG 363
                     **************99999999999845.555556**************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2506.29
//
Query:       KKY13645.1  [L=895]
Description: hypothetical protein UCRPC4_g06958 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (895 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 5981.57
//
Query:       KKY13646.1  [L=515]
Description: putative benomyl methotrexate resistance protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-23   83.0  32.6    1.2e-20   73.8  22.1    3.1  3  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.2   1.4e-07    0.0026      11      54 ..      82     124 ..      60     125 .. 0.86
   2 !   73.8  22.1   6.7e-25   1.2e-20     106     353 .]     114     394 ..     113     394 .. 0.71
   3 !   18.6  11.9   4.1e-08   0.00073      63     188 ..     315     444 ..     312     471 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.4e-07
       MFS_1  11 arsilgpalplalaedlgispseigllltlyalgaavaslplGr 54 
                 ++ i+++++   +ae++++s+ ++gl++tl+ lg++v++ ++G+
  KKY13646.1  82 NYRIVSLTFL-SIAESFHVSVEAAGLVTTLFLLGYCVLADIWGP 124
                 5556666676.89**************************99997 PP

  == domain 2  score: 73.8 bits;  conditional E-value: 6.7e-25
       MFS_1 106 gaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee..............kg 190
                 g+ ++ad++ + erg a++l+++++ +G++lgp+++g+l     Wr+ fy+l  ++   ++l ++ +pe+ p+   ++++++               + 
  KKY13646.1 114 GYCVLADIWGPVERGNAMALFAMMTFAGPALGPVVAGFLELKKDWRWDFYVLLWLAGGTAIL-MFTIPETLPSIVLQNKARRIrkakipgyetvkapVE 211
                 7889************************************9999***********9999993.466677777777776666658888888777777766 PP

       MFS_1 191 tgpaplvpawkallkdpvlw......illialllfffgfsg...lltllplylqevlgls....glllaglllallalvgailallagrlsdr...... 270
                 + +++l +++k  l++p  w      i ++++l++++++++   l+t  p+ +qe +g++     l l+g    ++a++g i+ +++    d       
  KKY13646.1 212 DTNRSLMKIYKVALTRP--WiilfdpISFLIALYISVVYTLlymLFTIYPIVFQEKRGWNsgvgELPLIG--TVIGAMLGGIV-IFVNSARDQrkidrg 305
                 66666666899999999..7667788444444444445555333666666669********776333444..33333333333.344444433245545 PP

       MFS_1 271 ..lgrrrrlllallllllaalglallavtssavllll.vlvliGfglgfv....fpsllalasdlappeeagtasglfntagslggalgp 353
                     ++ rl +a+++ + +a+ ++++a++ ++  +++ v  ++G++l++     f+++l++++d +   +a++a++++++a+s++ga +p
  KKY13646.1 306 hqSRPEDRLPVAMAGSVGFAITMFWFAWSAEYNSVHWiVPTIAGVFLATSimliFVAFLNYLTDAY-LMYAASAIAANTVARSAAGASAP 394
                 554449***********************5555555544444444333333344666666666655.389999***********999887 PP

  == domain 3  score: 18.6 bits;  conditional E-value: 4.1e-08
       MFS_1  63 rvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpke...ergraigllsagfslGailgpllggllasslgWravfyil 157
                 +v ++g ++fa++++++++++ +  +++++  ++G++ ++++ ++ +++  + ++      ++ai+  +++ s++ + +pl+  ++ +slg  +   ++
  KKY13646.1 315 PVAMAGSVGFAITMFWFAWSAEYNsVHWIVPTIAGVFLATSIMLIFVAFLNYLTDAylmYAASAIAANTVARSAAGASAPLFTTYMFDSLGVGGGGSLI 413
                 5999*********666667777777899999999999999988888888888888744477788888888***************************** PP

       MFS_1 158 aivsllafvlfllllpeepperkrkspkeee 188
                 ++++++++++ +++++  +p rkr++ ++ +
  KKY13646.1 414 GGMAAVLAIIPFAFYRYGEPIRKRSKFAPTS 444
                 *********9999998888888888877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       886  (0.0494171); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.48
# Mc/sec: 3194.15
//
Query:       KKY13647.1  [L=235]
Description: putative rapid response to glucose protein 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-19   69.4   0.0    4.7e-19   68.8   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase
    3.6e-05   23.6   0.0    4.8e-05   23.3   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.082   12.3   3.5       0.17   11.3   1.8    2.3  2  DUF3678          Protein of unknown function (DUF3678)


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   7.8e-23   4.7e-19       6     159 ..      21     180 ..      16     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 7.8e-23
  Methyltransf_16   6 eLkieedtge..sigrkvWdaavvlvkylekklakelganelsklsvlELGsGtGlvGlavaellpeakviltDleellellkknielnkn..a 95 
                      +L+i e      + +   W ++ vl+  l+k    +++ ++ +++ vlELG+GtGlvGl++a l  +++ +ltDl+  ++ l +ni+ln +   
       KKY13647.1  21 DLRIGEPALRaeGLSFSTWTSSFVLASLLHKL---DVDLSNPTEIPVLELGAGTGLVGLTAAIL-WRTSAVLTDLSPFVPGLANNIALNAAliS 110
                      566666554334888899******99998885...45678999*******************99.889999*****************999666 PP

  Methyltransf_16  96 lkskvkvevLdWgeeleedlleke....evDlilaaDcvYledslelLvkvLkellkkesk..vlvaykk 159
                        s+v    LdW+++    + + +    + ++ilaaD +Y e+   lL + + + l++++k  v+++y  
       KKY13647.1 111 APSHVDCGSLDWAQPGSLTFQDGKtiaaKSNVILAADTIYSEEHPALLSNAILQWLAPDQKsrVILTYPL 180
                      6789*********986444444331111569*****************9999988887776678888765 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0     8e-09   4.8e-05      20     136 ..      58     195 ..      42     223 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 8e-09
  Methyltransf_23  20 lraggrvLdiGcGtGil.levlrengfsvtgvDlspeaveiae..................kakkaqkdqfdeqeaaepqg...........kf 83 
                      +++   vL++G+GtG + l  +  +++s ++ Dlsp   ++a                   + + aq+                        k 
       KKY13647.1  58 NPTEIPVLELGAGTGLVgLTAAILWRTSAVLTDLSPFVPGLANnialnaalisapshvdcgSLDWAQPG-----------SltfqdgktiaaKS 140
                      667778*********542555567999*********999998766666655555554444433333333...........244444456666** PP

  Methyltransf_23  84 dlIvlrevlehvpdppellrqiatllkpg..Gylllseplaslkedrllldwlyl 136
                      ++I + +++++ ++p+ l + i ++l+p+   +++l++pl+ ++ d+l + w++l
       KKY13647.1 141 NVILAADTIYSEEHPALLSNAILQWLAPDqkSRVILTYPLRVAYLDQLRELWQLL 195
                      *****************99********987899********99999999999876 PP

>> DUF3678  Protein of unknown function (DUF3678)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.8   2.9e-05      0.17      12      25 ..      37      50 ..      35      51 .. 0.88
   2 ?   -0.4   0.0      0.12   7.4e+02       5      17 ..     101     113 ..      97     115 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.9e-05
     DUF3678 12 sastsSfslaHlql 25
                s++tsSf+la+l +
  KKY13647.1 37 STWTSSFVLASLLH 50
                89*********976 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.12
     DUF3678   5 DilvsaasastsS 17 
                 +i+++aa+ s  S
  KKY13647.1 101 NIALNAALISAPS 113
                 89****9877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1638.31
//
Query:       KKY13698.1  [L=440]
Description: hypothetical protein UCRPC4_g06948 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-56  191.2   0.2    3.1e-56  190.6   0.2    1.3  1  Glyco_hydro_cc  Glycosyl hydrolase catalytic core
  ------ inclusion threshold ------
       0.22   11.4   7.3       0.26   11.2   7.3    1.2  1  SPX             SPX domain
        0.7    8.4  13.3       0.93    8.0  13.3    1.2  1  Macoilin        Macoilin family
          2    7.2   9.6        2.5    6.8   9.6    1.2  1  Apt1            Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_cc  Glycosyl hydrolase catalytic core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.6   0.2   6.9e-60   3.1e-56       1     213 [.     208     420 ..     208     438 .. 0.91

  Alignments for each domain:
  == domain 1  score: 190.6 bits;  conditional E-value: 6.9e-60
  Glyco_hydro_cc   1 GlaynadasddkllsaksskisWyYnwsskpsselssaalefvPmlwgaksad.tdalanvksaakenskylLgFNePDlksqsnmspeeAaklw 94 
                     Glayn da+  +l+  +++++ W+Ynw s + ++  s  le++P +w ++s++ +d+ ++v++a +++ + +LgFNePD ++q+++s+++Aa+ +
      KKY13698.1 208 GLAYN-DADLTQLF--SGTNMGWAYNWASSAGGSVLSG-LEYIPQIWCSGSTSyDDWEDAVETALSSGAQSILGFNEPDESTQCDISASDAASGH 298
                     89998.88888888..9************997777775.8*******99999999**************************************** PP

  Glyco_hydro_cc  95 kqliqplre.kgvklvsPavaatnseegleWldeFleacskdckvdflavHwY....kgdfeelkehieelheayn....kpiWvTEfalqsesg 180
                     +++++p    +++kl+sPav++ +s++gl+++++F++ac ++c++df+ +HwY    +g  +++k+h++++ + ++    +++WvTEfa     +
      KKY13698.1 299 QTYMNP--FsGKAKLGSPAVTNGGSPMGLTYMQSFFDACDGNCAIDFMVIHWYssyyDGVDDDFKSHVQDAITLASdngiNEVWVTEFA----LN 387
                     ******..66**********66666****************************9987777999********99999999**********....89 PP

  Glyco_hydro_cc 181 dasqeetkeflnevlawldsqeyVeryawfgfr 213
                     das+e+++efl++vl+wlds++ V +ya+f+ r
      KKY13698.1 388 DASEEQSAEFLESVLPWLDSESAVGKYAFFMCR 420
                     *******************************33 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   7.3   5.8e-05      0.26      69     158 ..     122     207 ..      57     337 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.8e-05
         SPX  69 saaadesgnsaadasssepkdeaeslprrsplsrssrssssygglvssppsansssssddssesnpadssssssssesesssssspsllr 158
                 s++a++s++  a+as +++++ + s+        ss +sssy ++ ss++ a+sss  + ss+  +    s+sss++s+s+ssss+s+ r
  KKY13698.1 122 SSSAASSSTYVAPASTTSSSSADDSEATAAAFYVSSATSSSYVSFASSSSVASSSSYVAASSSTAS----STSSSASSSSTSSSSSSSKR 207
                 223333333444444444444444555555556666666666666666666666666665555552....22222222222222222222 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  13.3   0.00021      0.93     228     367 ..      75     206 ..      35     268 .. 0.44

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00021
    Macoilin 228 evdpvalsknnhslnkkdsslklpeleyrekkksakssrsdskkkhehnesvdsklqekeymenkskskrlsksessgsesellveesvksksssssss 326
                 +v+pva s+ + s + +d s+   +   +  + +++++++ +        +  s +++  y++  s++  +s ++s++++    v++ ++s+  s    
  KKY13698.1  75 TVEPVAASGSSDSAAATDGSTAAGTCAASRATITSTATEYVTVTV----GASSSAASSSTYVAPASTTSSSSADDSEATAAAFYVSSATSSSYVSFA-- 167
                 222333333333333322222222222222222222221111111....222233333333333333333333333333333333333332222222.. PP

    Macoilin 327 snknskkasagsagssnssskkhsessksvtsssssknskk 367
                   ++s+ as++s  +++ss+++  +ss s +s+sss++s k
  KKY13698.1 168 --SSSSVASSSSYVAASSSTASSTSSSASSSSTSSSSSSSK 206
                 ..222222222222222222222222222222222222222 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   9.6   0.00057       2.5     311     381 ..     132     205 ..      84     265 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00057
        Apt1 311 ess.seeddesdeesessssss....ssssssassssssssrssslelrlkptsstssssssessssssskkrsse 381
                   + s ++++s ++se++ +      s +sss  s +ssss +ss++    + sst ss+ss+ ssss+s+++ss+
  KKY13698.1 132 VAPaSTTSSSSADDSEATAA-AfyvsSATSSSYVSFASSSSVASSSSYVAAS-SSTASSTSSSASSSSTSSSSSSS 205
                 22221111222222222211.1344333333333333333333333332112.22222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1314  (0.0732891); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.47
# Mc/sec: 2818.30
//
Query:       KKY13699.1  [L=652]
Description: hypothetical protein UCRPC4_g06949 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-44  152.4   2.0    1.4e-44  152.4   2.0    2.3  2  Glyco_trans_2_3  Glycosyl transferase family group 2
     0.0046   16.4   0.0     0.0086   15.6   0.0    1.4  1  Glyco_transf_21  Glycosyl transferase family 21
  ------ inclusion threshold ------
       0.03   14.2   0.0      0.065   13.0   0.0    1.6  1  Glycos_transf_2  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.8      0.26   1.6e+03     164     195 ..      61     107 ..      45     114 .. 0.56
   2 !  152.4   2.0   2.3e-48   1.4e-44       1     182 [.     310     543 ..     310     646 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.26
  Glyco_trans_2_3 164 wsalplhlallllfslla...............lalvlllllllaal 195
                      ++  ++ l+++l++++++               l l++l++l+ a+ 
       KKY13699.1  61 FAVGLAVLLVFLIQGISIsklieetlwdgnkdrLFLIILCPLFIAFA 107
                      23333444455555555578888999999999733333444333332 PP

  == domain 2  score: 152.4 bits;  conditional E-value: 2.3e-48
  Glyco_trans_2_3   1 iilllDaDtvlppdclreiaaela.spevaivqgpvlvmnv.anwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalqevg.... 88 
                      iil++D+Dt++p d l+  a e++ spevai+q+ ++vmnv ++ +e+ +a+f++  ++ +i  ++++g+ +p+vG++aflr++a+q+++    
       KKY13699.1 310 IILIVDSDTRVPIDALLMGALEMHeSPEVAILQHTSGVMNVtGSAFENGIAYFTD-LVYTSIKYAVGSGDYAPFVGHNAFLRWKAIQAISfeed 402
                      79**********************77*************7648888999998886.677789999**********************9999999 PP

  Glyco_trans_2_3  89 ....gwdgdessvsEDfdmglrlqrkGyrvrfvpes..lvkekspltlraalrQrkRwayGc.el....eklil.................... 151
                          +w   +++vsEDf ++lrlq +G++vr+++++  ++ke+++lt+ ++l++++++a+Gc e+        +                    
       KKY13699.1 403 gmrkYWT--DKHVSEDFQIALRLQIQGSIVRLASYHggGFKEGVSLTVFDELARWQKYAFGCnEIifhpI---Ykwykgpftplfwqflfsdmk 491
                      9999**9..9***************************999**********************73343332...233355666666666677777 PP

  Glyco_trans_2_3 152 ...lvrllgylgsl..lwsalplhlallllfslla................l 182
                         +++ lgy+ ++  ++sa+p  la+++l+++++                +
       KKY13699.1 492 pttKISILGYMSTYyaIASAVPTTLANYFLMGWIPgkvdafyinswkvlvgI 543
                      7778888888777733568899999999999999888866666554433332 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.4e-06    0.0086      32     148 ..     309     435 ..     298     457 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.4e-06
  Glyco_transf_21  32 dllvisDsdvrvkpdyLeellaaled.pkvglVtslpvgsdakglaaaleaaflntlagvlqa.kl..sglgfavGksmalrreaLeaiG.... 117
                      ++++i Dsd+rv+ d+L   + ++ + p+v+++++++ +++  g a +   a+++ l ++    ++  +     vG    lr +a++ai+    
       KKY13699.1 309 EIILIVDSDTRVPIDALLMGALEMHEsPEVAILQHTSGVMNVTGSAFENGIAYFTDLVYTSIKyAVgsGDYAPFVGHNAFLRWKAIQAISfeed 402
                      789************998766666555****************9888888888854433333333432688999**************974444 PP

  Glyco_transf_21 118 Gfea..ladeLAeDyalgkllraaGlkvvlspa 148
                      G+++    +++ eD++++ +l+ +G  v+l++ 
       KKY13699.1 403 GMRKywTDKHVSEDFQIALRLQIQGSIVRLASY 435
                      56553335799**************99999986 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.1e-05     0.065      80     167 ..     308     395 ..     297     398 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
                      SSEEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHH CS
  Glycos_transf_2  80 gdyilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrreale 167
                      g++il++D+D+ ++ d l   + ++++ ++ ++l+++      t+    n   ++   +y+ ++     g+ + ++g++a lr +a++
       KKY13699.1 308 GEIILIVDSDTRVPIDALLMGALEMHESPEVAILQHTSGVMNVTGSAFENGIAYFTDLVYTSIKYAVGSGDYAPFVGHNAFLRWKAIQ 395
                      89*************************77777777777777777777777766*****************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4405.99
//
Query:       KKY13700.1  [L=296]
Description: putative gram-negative bacteria binding [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-16   59.2   6.2    6.3e-16   58.3   6.2    1.6  1  Glyco_hydro_16  Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   6.2   3.5e-20   6.3e-16      28     132 ..      84     231 ..      24     274 .. 0.79

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 3.5e-20
                     E......................EEEEEEEE..CCEESSEEEEEEEE---STTEEEEEEE...ETGG...TSTTEEEEE.EEETT-TTE...... CS
  Glyco_hydro_16  28 k......................esgsriks..kksflyGkvearikaaksaGvvtafyl...ssed...ekahdEiDi.EflGndtgk...... 85 
                     +                        ++r+++  kks++yG+ve+ +k+++++ +++a+++    + +   ++a++EiD+ E  Gnd++       
      KKY13700.1  84 SyselndtctstsnstlgtiinpVRSARLSTkgKKSIKYGRVEVVAKLPRGDWLWPAIWMlpeHN-TygdWPASGEIDLsETRGNDRTYtsgrdr 177
                     044444444444445555555557799****99***************************75423.2467***************9988788998 PP

                     EEEEEEBTTBSGE......EEEEET.SS-TTTS-EEEEEEEETTEEEEEETTEE CS
  Glyco_hydro_16  86 vqtnvygkGkgkr......ekrlsl.wfdptedfHtYaieWtpdkikfyVDgkp 132
                       +++++  ++++       +++++ + d+++dfHt+++eW+++++  ++D++ 
      KKY13700.1 178 SGSTLHWGTDSTNdawyktYNTFTMkQGDFSDDFHTFGMEWSEEYLFTWIDNRN 231
                     8899998888775566554223333588*****************999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2005.18
//
Query:       KKY13701.1  [L=479]
Description: putative pantothenate transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-12   46.7  42.6    3.9e-11   42.5  21.1    2.4  3  MFS_1        Major Facilitator Superfamily
     0.0092   15.9   0.0      0.027   14.5   0.0    1.7  1  SelB-wing_1  Elongation factor SelB, winged helix


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.3      0.06   5.4e+02      25      51 ..     104     131 ..      89     151 .. 0.61
   2 !   42.5  21.1   4.3e-15   3.9e-11     126     352 ..     133     375 ..     124     376 .. 0.70
   3 !   18.2  13.5     1e-07   0.00094      41     187 ..     276     426 ..     269     450 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.06
       MFS_1  25 edlgispseigllltlyalga.avaslp 51 
                 ++lg++  e+++++t+y+++  + + l+
  KKY13701.1 104 TQLGMTSNEYNFITTIYYIVHeMSLRLL 131
                 5677777777777777776543444444 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 4.3e-15
       MFS_1 126 lsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee............kgtgpaplvpawkallkd 206
                 ++++++++ ++  + + ++ ++ g      W+++f+  +++++ ++++++++lp+ p + k+ +p+e+             +   ++ + + + + +kd
  KKY13701.1 133 FYICSNFSGVICGIMAFAFDEASGhrglsgWQWLFLCQGLITVALGIIVYFYLPDFPQQAKWLTPRERAfiearlpqnspqATESNFRFHE-IVHAVKD 230
                 555666666666666666665555777777**************************************99998877666654444455555.8888888 PP

       MFS_1 207 pvlwillialllfffgfsglltllplylqevlgls.....glllaglllallalvgailallagrlsdr.lgrrrrlllallllllaalglallavtss 299
                   lw++ ++++++++g++gl+++  +     lg++      ll +   +++la+++++   ++g ++d    +r+   l++l+++l++ +++++ ++  
  KKY13701.1 231 IRLWLFTLIWAFMTIGTQGLTFYQSTV-IANLGFTtiaraQLLNLP--VSVLAVLTIA---VFGIWADTaRLPRPLYPLFFLATILICYSVLYTFPS-- 321
                 899955555555556999999999996.*******88875444444..5555555544...455555442234566666666666666666666666.. PP

       MFS_1 300 avllllvlvl...iGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 +  ++++ v+   ++ ++   + ++ +++++ a    +++a+g++n++g++ggalg
  KKY13701.1 322 NGGVYAATVIsnaASAAWYPLMWPWRVQTTSRA--TGSAFAIGFVNSYGQIGGALG 375
                 455555666623333344444666677777777..7889****************9 PP

  == domain 3  score: 18.2 bits;  conditional E-value: 1e-07
       MFS_1  41 yalgaavaslplGrlsd..rfGrrrvlllglllfalglllll..fasslwlllvlrvlqGlgagalfpagaaliadwfpk.eergraigllsagfslGa 134
                 ++++a++++ ++G ++d  r+ +r+++ l +l+++l ++  l  f +s   ++++ v++ ++++a +p++  + ++ +++ +  ++aig++++  ++G 
  KKY13701.1 276 VSVLAVLTIAVFGIWADtaRL-PRPLYPLFFLATILICYSVLytF-PSNGGVYAATVISNAASAAWYPLMWPWRVQTTSRaTGSAFAIGFVNSYGQIGG 372
                 578999***********6666.999******99999977777345.66669*****************************99***************** PP

       MFS_1 135 ilgpllggllasslgWravfyilaivsllafv..lfllllpeepperkrkspkee 187
                 +lg  +    + +  ++++f ++ ++   +++  l+ ++++++  +r rk ++ +
  KKY13701.1 373 ALGSQIFRSQY-APHYTVSFSVAMVMIGCSILttLGTWWITRDTEQRTRKLKRAR 426
                 ***55544444.3447777777777777777777999999999999888877666 PP

>> SelB-wing_1  Elongation factor SelB, winged helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     3e-06     0.027      10      41 ..      35      66 ..      27      74 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3e-06
  SelB-wing_1 10 vvrehreGLdWqeaaaraaLsleetrkLLqdm 41
                  v  h +G d     ar+aL+ ee +kLL+ m
   KKY13701.1 35 FVDGHIDGYDAERMRARSALTAEEEKKLLRRM 66
                 5788*************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3206.67
//
Query:       KKY13702.1  [L=336]
Description: putative 2og-fe oxygenase superfamily protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-18   67.8   0.0    3.2e-18   66.6   0.0    1.6  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    3.8e-14   53.0   0.0    6.3e-14   52.3   0.0    1.4  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   3.5e-22   3.2e-18      13     103 ..      15     108 ..       7     120 .. 0.87

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 3.5e-22
      DIOX_N  13 edraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKeklaks.p..sfrGysrlgeektdgkkldwkesfdlgtelpedd 103
                   ++++a+ql +A++++Gffy++n g+++e++d+ f++ +++F+lP+eeK+k++ + +  ++ Gy++lg  + +++k d  e +++ +  pe +
  KKY13702.1  15 GGKRKLANQLSHAIEKIGFFYITNFGFSQEEVDQQFAIGKKLFELPTEEKLKYRADlEhgGYNGYKPLGLREIRPGKFDNTEIYNIPKFIPEYE 108
                 56899************************************************55433459********9999999*********988877654 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0     7e-18   6.3e-14       5     101 .]     164     270 ..     160     270 .. 0.81

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 7e-18
                   EEEEEE-S-....-----....---EEEEEESSSEEEEEEE-TT---EEEE..TEEEE----TTEEEEEE-HHHHHHTTS-S----EEE-.---GTG CS
  2OG-FeII_Oxy   5 lvlnyypph....pdpev....ilglgahtdaslltillqddvgglevfkd..gkwlrvppvdnslivniGdallflsngryksvlHrVl.pvnege 90 
                   + l+y++ h    ++  +    +  + +htd + lt+l+  +v+ l+v  +  g+w  v+p ++s++vni d+l fl+ng++ks+ HrV  p   + 
    KKY13702.1 164 CHLRYMKYHhrtkQE--NdeldNVWVKGHTDFGSLTLLFRQPVAALQVR-TpeGDWKWVKPYPESITVNIADSLTFLTNGYLKSSIHRVVaPPPDQA 257
                   668886667555422..1235655589*********************4.44488***********************************6666665 PP

                   S..EEEEEEEE-- CS
  2OG-FeII_Oxy  91 r..Rvsiayfiep 101
                   +  R+ + yf++p
    KKY13702.1 258 DvdRIGVLYFLRP 270
                   5889999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2403.54
//
Query:       KKY13703.1  [L=282]
Description: putative 2og-fe oxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-15   55.4   0.0      1e-14   54.8   0.0    1.2  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
    0.00092   19.9   1.4      0.039   14.7   0.2    3.0  3  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
  ------ inclusion threshold ------
       0.19   11.5   0.0        6.1    6.6   0.0    2.1  2  DUF2785       Protein of unknown function (DUF2785)


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   1.7e-18     1e-14       6      98 ..     121     215 ..     115     218 .. 0.86

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 1.7e-18
                   EEEEE-S------.---EEEEEESSS.EEEEEEE-..TT---EEEETE.EEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTGSEEEEEE CS
  2OG-FeII_Oxy   6 vlnyypphpdpev.ilglgahtdasl.ltillqdd..vgglevfkdgk.wlrvppvdnslivniGdallflsngryksvlHrVlpvnegerRvsiay 97 
                   v+ +yp + d     +g+g+h+d s   t+llq +  + gle +++++ w+ vpp +++++vniG+a++++++g  k + HrV     + +R+s+ +
    KKY13703.1 121 VV-HYPLSSDEGGsVQGVGPHKDSSGwWTFLLQASpdTSGLEALNKSNeWVAVPPIPGTFVVNIGQAFEVVTHGICKATTHRVV--SGQNERYSVPF 214
                   44.459999998669*********9978889999999****99866556**********************************5..55566****** PP

                   E CS
  2OG-FeII_Oxy  98 f 98 
                   f
    KKY13703.1 215 F 215
                   9 PP

>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0035        21       1      24 [.      16      39 ..      16      39 .. 0.89
   2 !   14.7   0.2   6.5e-06     0.039      88     117 ..      36      71 ..      35      72 .. 0.82
   3 ?   -1.6   0.0      0.74   4.4e+03      32      49 ..     187     204 ..     182     214 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0035
      DIOX_N  1 iPvidlsplsddedraavaeqlre 24
                iP+idls +s++ +++ +++qlre
  KKY13703.1 16 IPLIDLSLASSQTAKPHLLSQLRE 39
                9******6688899*******986 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 6.5e-06
      DIOX_N  88 dwkesfdlgtelp......eddpagkplegpnqwPe 117
                 +++e+f+++telp      ++ p +++l+gpnqwP+
  KKY13703.1  36 QLREQFEFATELPerwtegSGLPLYERLKGPNQWPK 71 
                 589**********7776444445************7 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.74
      DIOX_N  32 fyvvnhgvpeelidelfe 49 
                 f vv hg+ ++ ++++ +
  KKY13703.1 187 FEVVTHGICKATTHRVVS 204
                 778999999998888876 PP

>> DUF2785  Protein of unknown function (DUF2785)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.001       6.1      65     114 ..      81     130 ..      77     133 .. 0.95
   2 ?    2.6   0.0     0.017     1e+02      95     147 ..     186     238 ..     182     255 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.001
     DUF2785  65 kGWaHafahiadlldellkepelkradailllelivkkltrtqsvlaadE 114
                 +G++  ++h+++ + el++e+++   d+++ +  ++++l+ + ++l  dE
  KKY13703.1  81 EGYIDELTHLGERFLELVAEALGLPPDIFFSFLSEQHRLKVVHYPLSSDE 130
                 69*******************************************99998 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.017
     DUF2785  95 llelivkkltr.tqsvlaadEdeRlatailalleknkleeetllawleelrqel 147
                 ++e++ + + + t++ ++ + +eR + +  + ++   l++++ l +l+e+++ +
  KKY13703.1 186 AFEVVTHGICKaTTHRVVSGQNERYSVPFFQGVRGS-LTKQEALGVLQEWARTF 238
                 67888888888899*****************99987.99***********7766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.36s 00:00:00.98 Elapsed: 00:00:00.59
# Mc/sec: 1449.63
//
Query:       KKY13704.1  [L=872]
Description: putative dna ligase 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-50  171.2   0.0      2e-47  161.5   0.0    2.4  2  DNA_ligase_A_M   ATP dependent DNA ligase domain
    5.6e-36  124.5   0.0      1e-35  123.6   0.0    1.4  1  DNA_ligase_A_N   DNA ligase N terminus
      1e-19   70.9   0.0    4.3e-19   69.0   0.0    2.2  2  DNA_ligase_A_C   ATP dependent DNA ligase C terminal region
  ------ inclusion threshold ------
       0.21   11.4   0.6         11    5.8   0.0    2.7  3  mRNA_cap_enzyme  mRNA capping enzyme, catalytic domain


Domain annotation for each model (and alignments):
>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.5   0.0   4.6e-51     2e-47       1     188 [.     434     622 ..     434     633 .. 0.95
   2 !    7.1   0.1   0.00084       3.7     185     204 .]     673     692 ..     658     692 .. 0.92

  Alignments for each domain:
  == domain 1  score: 161.5 bits;  conditional E-value: 4.6e-51
                     -EEEEEESCHHHHHHHTTTSEEEEEEEESSEEEEEEE.ETTEEEEEETTS-B-GGGCHHHHHHHHHHBSTTESEEEEEEEEEEEETTTTCBEHHH CS
  DNA_ligase_A_M   1 pmLAeslksiekalkkleekafivEiKyDGeRaqvhk.egdkvklfSRrlkditaakpelvkalkeafkkdeksvilDGElvavdketgeilpfq 94 
                     pmL + +++++++l+kl++++f +E+KyDG+Raqvh  +++kv++fSR l+ +t+++p+lv  + e++ + ++s+il+GE+vavd+ tge + fq
      KKY13704.1 434 PMLGSITRDLSEMLTKLQGRDFSCEYKYDGQRAQVHCdSKGKVSIFSRHLEVMTDKYPDLVALVPEIRGDGVSSFILEGEVVAVDRGTGELQTFQ 528
                     9***********************************9799******************************************************* PP

                     HHCHHHHCHCCTHHHHHHSEEEEEEEEEEEETTEEHTTSCHHHHHHHHHHHB--BTTTEEE--EEEE..SSHHHHHHHHHHHHHTTECEEEEEET CS
  DNA_ligase_A_M  95 klasrkkkkkkveeklkeaelclfvFDiLyldgesltdeplkeRrklLeeilkesedrvelaeslev..kdveeleelleeaiseglEGlvvKnp 187
                     +l++r++k++++ ++  ++ +clf+FD++yl+ge+l+d+p++eRr lL++++ e+e+++  ++s +    d+e + e+++ a + ++EG++vK  
      KKY13704.1 529 TLTNRARKDVDIGSI--KIDVCLFAFDLMYLNGEPLLDRPFRERRGLLRSMFIEKEHNFTWVKSMDAtsADSEAVLEFFKGATDVKCEGIMVKVL 621
                     ***************..***********************************99999999999987733567889******************87 PP

                     T CS
  DNA_ligase_A_M 188 d 188
                     d
      KKY13704.1 622 D 622
                     6 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00084
                     EETT-CC-TTCEEEEEEEEE CS
  DNA_ligase_A_M 185 KnpdskYepgkrsknwlKvK 204
                     K   s+Yep+kr + wlKvK
      KKY13704.1 673 KALVSTYEPDKRLDSWLKVK 692
                     67789**************9 PP

>> DNA_ligase_A_N  DNA ligase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.6   0.0   2.2e-39     1e-35       2     173 .]     177     354 ..     176     354 .. 0.98

  Alignments for each domain:
  == domain 1  score: 123.6 bits;  conditional E-value: 2.2e-39
                     CHHHHHHHHHHCC.---HHHHHHHHHHHHHTS-..SHHHHHHHHHH....SS-CCCS------HHHHHHHHHHHHT--HHHHHHHHHHHS-HHHH CS
  DNA_ligase_A_N   2 FaelaelfekieestkkrlekrailanffrkvesagpedlypalrL....llPdydgreygigesllakalaealglskkkikdalakvgDlgev 92 
                     +a+l++ f  +++ t++r+++++ l n++r++++ +p++l+pa++L    + P y + e+g+g+s+++kal +++gl+++ +k+ ++k+gD g+v
      KKY13704.1 177 YALLTRCFVLVNS-TQSRIKIVDTLVNCLRTIIVGDPSSLLPAVWLatnsISPPYISLELGLGGSAISKALKKVCGLDNAGLKAIYDKHGDAGDV 270
                     8999*********.999**************************************************************9*************** PP

                     HHHHHCCHHHH.------BHHHHHHHHHHHHH-.STTHHHHHHHHHHHHHHHS.-HHHHHHHHHHHCT---SS--HHHHHHHHH CS
  DNA_ligase_A_N  93 aeevlskrstl.akkspltieevnelLdklaaa.gkgsedekkkilkkllkra.speEakyliriilkdlriglsektvldala 173
                     a+e+++k+s + +k++pl+i+ v+++L k+a++ g+gs ++k++i+++l++ a ++eE +y++r++ + lrig+ ++t+l ala
      KKY13704.1 271 AFEAKKKQSFTlRKPKPLSIKAVYQSLVKIANSkGTGSVENKQRIVERLVQDArGAEESRYIVRTLVQHLRIGAVKTTMLIALA 354
                     ********9999*******************999******************999***************************97 PP

>> DNA_ligase_A_C  ATP dependent DNA ligase C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   9.5e-23   4.3e-19       2      99 .]     717     829 ..     716     829 .. 0.90
   2 ?   -3.7   0.0         4   1.8e+04       7      27 ..     838     858 ..     836     861 .. 0.81

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 9.5e-23
                     GGSEEEEEEEEEE..TTEEEEEEEE-SS--HHHHHHHHHHHG....GGEECTTCESS---HHHHTTEEE-TT-EEEEEESEEECTSSSTT..... CS
  DNA_ligase_A_C   2 gglvgslllgvyd..dgkleyvgkvgtGfsdaeleelrkklk....elerkkppfaekvpeeekrdvWvePelvveVkfaeitasgkyka..... 85 
                     +++++ +ll++++  +g+le v+k+ +Gf+d+ +++ ++k+     +++ ++p + +      ++dvW+eP+ v+e +fa+it s++y+a     
      KKY13704.1 717 AKWWSPILLACRNpeTGSLEVVTKCISGFTDKFYQANKEKYAegsdNVRDAQPGYIQYNAG--HPDVWFEPQEVWEMAFADITLSPTYTAaiglv 809
                     688999********99*************************87987677777777333333..4669**************************** PP

                     ......EECT-EEEEE-TTS CS
  DNA_ligase_A_C  86 ......slRfPrfkrlReDk 99 
                           slRfPrf+++ReDk
      KKY13704.1 810 seerglSLRFPRFLKVREDK 829
                     *******************8 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4
                     EEEEEEEETTEEEEEEEE-SS CS
  DNA_ligase_A_C   7 slllgvyddgkleyvgkvgtG 27 
                      +l ++y++++ +  +++gtG
      KKY13704.1 838 DFLAALYRKQEARAKAETGTG 858
                     699999999998888888888 PP

>> mRNA_cap_enzyme  mRNA capping enzyme, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.019        87       8      80 ..     445     515 ..     438     531 .. 0.72
   2 ?    5.8   0.0    0.0025        11      94     129 ..     550     585 ..     538     606 .. 0.83
   3 ?   -2.7   0.1      0.95   4.2e+03     127     160 ..     653     686 ..     649     697 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.019
                      THHHHHHHS-EEEEEEESSEEEEEEEEECTEEEEEEETTS-EEEESSST-BTTSSSSTCTSBGGSEEEEEEEE CS
  mRNA_cap_enzyme   8 enlekLkqkkYvvseKaDGiRylmllteeeegvylidRenevyrvenlrfprekdkeklekvldetllDgElv 80 
                      e l kL+ +++    K DG R  +  +++ + v ++ R+ ev   +  +++   ++       ++ +l gE+v
       KKY13704.1 445 EMLTKLQGRDFSCEYKYDGQRAQVHCDSKGK-VSIFSRHLEVMTDKYPDLVALVPEI-RGDGVSSFILEGEVV 515
                      5688999********************9965.******9998776555555444322.244455556666655 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0025
                      EEEEEEEETTEEGTTSBHHHHHHHHHHHTHHHHHHH CS
  mRNA_cap_enzyme  94 liyDivaingvtvaeeplskRleilkkelikprnee 129
                        +D++ +ng  + ++p+ +R  +l+  +i+  ++ 
       KKY13704.1 550 FAFDLMYLNGEPLLDRPFRERRGLLRSMFIEKEHNF 585
                      57********************99999998877665 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.95
                      HHHHHTTCCCCTTSSSEEEE--EEETTHHHHHHH CS
  mRNA_cap_enzyme 127 neekktglletdkepfsvrlKefilleavaklle 160
                       ++ k++  +++++ + +r+K+++ ++++ k l+
       KKY13704.1 653 SKKSKSKASREEEKSLGTRRKALVSTYEPDKRLD 686
                      4455888888899999******999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (872 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.53
# Mc/sec: 4912.43
//
Query:       KKY13705.1  [L=853]
Description: putative rint-1 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.3e-174  579.8   0.0   7.6e-174  579.2   0.0    1.2  1  RINT1_TIP1       RINT-1 / TIP-1 family
  ------ inclusion threshold ------
       0.13   12.0   2.9        0.6    9.8   1.0    2.3  2  DUF745           Protein of unknown function (DUF745)
        9.8    6.7   7.6        3.7    8.0   3.8    2.3  2  Snapin_Pallidin  Snapin/Pallidin


Domain annotation for each model (and alignments):
>> RINT1_TIP1  RINT-1 / TIP-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  579.2   0.0  1.3e-177  7.6e-174       1     499 []     246     848 ..     246     848 .. 0.96

  Alignments for each domain:
  == domain 1  score: 579.2 bits;  conditional E-value: 1.3e-177
  RINT1_TIP1   1 LplevlvkplekrFrYHFsgdkqTnklskpewflefilklleknldflrenvqpilakkfrek........idavsefitaLlplvreKvasvleevls 91 
                 Lpl+++v+ple+rFrYHF+gdk+Tn+l+kpe+fl++i++l+e ++df+ e++q il+k +++          da+++fit+Llp+vr+K  s l+++++
  KKY13705.1 246 LPLQIMVHPLELRFRYHFNGDKPTNRLDKPEYFLSHINDLIEAYNDFMLEHLQTILDKYATNPgfqsnlayTDATTAFITSLLPMVRQKCLSLLPQIAD 344
                 8*********************************************************6666699********************************** PP

  RINT1_TIP1  92 dpalLshlisellsfdkeLrekykYda....eekwkgLtselLdqekvfekWlevEkefalerfeeIisskdaweidyDsveskktkptksavrvvdLL 186
                 d++lLsh+++el++fd +Lr+ ++Y++    +e+w+gLt+e+L ++++f+ Wle+Ek+fal+r+++I+s++d++eid+D   +++tkptk+a+rv+dLL
  KKY13705.1 345 DTQLLSHFVHELMEFDATLRDAWSYTPtttpSETWRGLTWEVLVTHGYFNIWLEAEKSFALDRYHAITSTADSGEIDFDTPLPGTTKPTKGAIRVNDLL 443
                 **************************445679******************************************************************* PP

  RINT1_TIP1 187 esiteryeplssfsyklkflsdIqlelldqYherLkssleayesltstvgrtlqge.tkeqqaelegvkglerlckiygsakylenaledwsdevfFie 284
                 e+it+ry+plssfs++l+fl+dIqle++d+Yh rL++sleay sltst+grt++g+ + +++++l+g++glerlc+++gsa+yle+++ dwsd+vfF+ 
  KKY13705.1 444 ETITDRYRPLSSFSQRLRFLIDIQLEIFDRYHIRLHESLEAYISLTSTLGRTMSGSaSGDSSTDLSGIRGLERLCRVFGSAEYLERKMLDWSDDVFFLG 542
                 *******************************************************977777889*********************************** PP

  RINT1_TIP1 285 Lweelqerakknee.......................stavgse..........eegalFdetiaaydrlrkraeelivealkkeikealkaYvnksqW 350
                 +weelq+r+k+n                         +     +          e+galFdet++ay+rlr+r+e +i+e +   i++alk Y+++s+W
  KKY13705.1 543 MWEELQSRTKSNAGtnrsvardmsvahiasktssvmaN-----GgsgqdtngdaEDGALFDETASAYRRLRTRSEGIIIESMEAAIRTALKGYSKISTW 636
                 ********9999999999*9999999999866544440.....24556666777********************************************* PP

  RINT1_TIP1 351 sslsssses.......slsvsselvellnllkrlldfLekalskalfrriwrelleklqdllweevllrnkFseaGaaQlarDvealfalvdryik... 439
                 ++l+ ++ +        +s+s+el+ +l++l  +l fL ++ls+ ++rr++r+++ +lq ++w++v++rn+Fs +Gaa l++D+ a++++++++++   
  KKY13705.1 637 ATLTVTTVAtgeaggqAMSISPELNGPLQALDAQLGFLASVLSRTPLRRVTRQICLSLQAYIWDYVMMRNTFSVGGAAILHTDILAVCNTINQHVGagi 735
                 999988877899*************************************************************************************** PP

  RINT1_TIP1 440 .elklkkLkealkLlnlkve..................................................salsLkealervftd..eakklleelgle 485
                  e+ +k+L+eal Ll l+ +                                                  s+ +L+++++rvf++  +a+++l++lgle
  KKY13705.1 736 aESGMKRLREALALLCLSADgastdtteitgsaeaedawgfteedtgleqptgprrelsdsdhsmdsaevSKWGLWDVEKRVFKSndSAREALRHLGLE 834
                 *******************9**************************************************99***********77678*********** PP

  RINT1_TIP1 486 kLseseardvLerr 499
                 +L+e++ar +L rr
  KKY13705.1 835 TLNEQDARGILGRR 848
                 *************8 PP

>> DUF745  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.0    0.0001       0.6     129     167 ..      14      52 ..       2      57 .. 0.87
   2 ?    1.2   0.0     0.043   2.6e+02      62      90 ..     163     192 ..     149     202 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0001
      DUF745 129 gaqqelaektqlleaAkkRveeLkkqlkearkdlektkk 167
                 +++++l++   ll++Ak++ + Lk+ql++a  dl++t +
  KKY13705.1  14 QVEADLDSLDVLLDTAKRQQALLKQQLDQANLDLQETSD 52 
                 67788999999************************9975 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.043
      DUF745  62 qlveqleqelreaeavvqee.kkslqssea 90 
                  lv+q+eqe r+ +++++++  ++lq++  
  KKY13705.1 163 HLVDQVEQETRDLDEQMRNVfGEALQKTLD 192
                 689***********9999873466776655 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.8   0.00062       3.7      12      51 ..      16      55 ..      14      80 .. 0.88
   2 ?   -2.6   0.1       1.3   7.9e+03      32      46 ..     164     178 ..     163     189 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00062
  Snapin_Pallidin 12 epkldeldeklkelrqsQeeLleqldrlnekLkeleeaqe 51
                     e +ld ld  l   +++Q  L++qld+ n +L+e++++  
       KKY13705.1 16 EADLDSLDVLLDTAKRQQALLKQQLDQANLDLQETSDVSA 55
                     6689999999999**********************99876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.3
  Snapin_Pallidin  32 LleqldrlnekLkel 46 
                      L +q+++++++L+e 
       KKY13705.1 164 LVDQVEQETRDLDEQ 178
                      678889999988864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       794  (0.0442858); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 5947.61
//
Query:       KKY13706.1  [L=347]
Description: hypothetical protein UCRPC4_g06933 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.035   14.2   0.1      0.087   12.9   0.1    1.7  1  ANAPC5    Anaphase-promoting complex subunit 5


Domain annotation for each model (and alignments):
>> ANAPC5  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   4.9e-06     0.087      27      78 ..      61     112 ..      35     129 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.9e-06
      ANAPC5  27 yvlsqnessqkksyqyalLnlaslhadfghneeAvkaleeairlArenkDks 78 
                 +++  +e+ +++++ +   + a+ +a+fg +e + + ++ ai+l+++++++ 
  KKY13706.1  61 RTTRDHENVKAEKFTMVRTSQAMWEARFGSPERSHDYITAAITLVQQQQSMH 112
                 34444555558999999******************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2276.77
//
Query:       KKY13707.1  [L=478]
Description: putative ammonium transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.5e-106  354.9  22.6   5.4e-106  354.6  22.6    1.0  1  Ammonium_transp  Ammonium Transporter Family


Domain annotation for each model (and alignments):
>> Ammonium_transp  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.6  22.6    3e-110  5.4e-106       3     394 ..      24     422 ..      22     427 .. 0.96

  Alignments for each domain:
  == domain 1  score: 354.6 bits;  conditional E-value: 3e-110
                      HHHHHHHHHHHHHHHHHHHHHHSSGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSCBSSSSSCE-.......TTTTSCCGCCTTCCHHHHHH CS
  Ammonium_transp   3 lllsaalvifmqagfalleaglvrsknvlnilvknlldlavvvllyvlfGyslafgkskgvsgfign.......lglsaagvqdetlldglffl 89 
                      l+++ ++v++  +g++ll++gl+++k++l++l+++ll +av++++++++Gysla+++    + fig          ++a ++ ++++++++f l
       KKY13707.1  24 LIFCGFIVWLIIPGLGLLYGGLSQRKSALAMLFQSLLVAAVTTFQWMFWGYSLAYSRT--AGPFIGDlanfgmmNVMAAPSIGNSSIPEIVFCL 115
                      67789999999*********************************************99..99999999999995556678899*********** PP

                      HHHHHHHHHHHHHHHHCTTTB-HHHHHHHHHHHHHHTHHHHHHHHHS.SSHHHHTT--.-SSSTTTTHHHHHHHHHHHHHHHS-STTTTGTTTS CS
  Ammonium_transp  90 fqlafaataitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvliDfAgstvVHlvggvagLaaalvlgkregrfegkee 183
                      +q+ f+a ++ iv g++ er ++++ l+f++ ++t+vy+p+a w+w+  gwl++l  l DfAg++ VH+ +g+++La+al+lgkr+  + +k++
       KKY13707.1 116 YQMFFCACTVMIVVGGAFERGRIVPSLIFGFWWATVVYCPIANWTWNPAGWLYNLPSL-DFAGGGPVHISSGWSALAYALILGKRKTHG-QKKS 207
                      **********************************************************.***************************999.99** PP

                      S--GSBHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHH.HHHHHHHHHHHHHHHHHHHHHHHC.SS-BHHHHHHHHHHHHHHHTTTTTTS-HHH CS
  Ammonium_transp 184 aikghnlpfavlGtllLwfgWfgFNaGsaltankrararaavtTllAaaagaltallisrlke.gkinvlglanGilAGlVAiTaacavvepwg 276
                        +ghn+++++lGt l++fgWfgFN+Gsal+ + ra   aa++T++Aaa+g +++++++ +k+ g+++++g+++G++AGlV+iT+a+++v++w 
       KKY13707.1 208 GPRGHNISLVFLGTTLIYFGWFGFNGGSALNGSIRAML-AAFNTNTAAATGCIGWVICDFIKHrGRFSLVGACEGVIAGLVGITPAAGYVDVWC 300
                      **************************************.**********************999****************************** PP

                      HHHHHHHHHHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHHHHHHHHTSHHHC...SSHSSTTGGGT-CHHHHHHHHHHHHHHHHHHHHHHH CS
  Ammonium_transp 277 AliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaekvv...askisggllsgegkqlvvqligilvilayafvvtli 367
                      A +iG+v++++++l+   +++ l++dD l v+++Hg+gG+ G++++gifa+ek         ++g + g+g q+++q + i++i  y+fvv+  
       KKY13707.1 301 AAVIGFVTAIVCNLADP-INDLLRVDDGLYVFKLHGIGGMCGAFLTGIFATEKISaldGVTLAPGGIDGNGIQVGKQFAEITAISSYSFVVSCA 393
                      ****************8.**********************************98898888889999999************************* PP

                      HHHHHHHHTT..SB--HHHHHHSHHHHHH CS
  Ammonium_transp 368 lllllklllg..LrvseeeeevglDvaeh 394
                      lll+lk+++   Lrvs+e+ee+glD+ ++
       KKY13707.1 394 LLLILKYIPYmhLRVSDEAEEAGLDMDQF 422
                      ********9888**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 3115.41
//
Query:       KKY13708.1  [L=796]
Description: putative variant 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-06   27.1   0.0     0.0035   17.0   0.0    2.4  2  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00011         2       9      37 ..     194     222 ..     178     228 .. 0.82
   2 !   17.0   0.0   1.9e-07    0.0035      83     134 ..     227     283 ..     221     284 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00011
  Acyltransferase   9 nlpekgpailvaNHqsylDvlllwlllyk 37 
                        +e++ +++++ H++++D++ l+++ y+
       KKY13708.1 194 AAKENKSIVFLPSHKTHIDYIALQVICYR 222
                      4455899******************9976 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1.9e-07
  Acyltransferase  83 eniselleegklvviFPEGtrsregellpfkkGlvrlaakak.....kgvpivPvai 134
                      +++  +l+ g+    F EG+rsr+g+ll +k G+ + + +       +++ i+Pv+i
       KKY13708.1 227 AYLDTMLRLGYNFECFIEGGRSRTGKLLAPKYGILQYIYESIdsgrcDDCLICPVSI 283
                      455569999999*****************************99***********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.50
# Mc/sec: 4820.81
//
Query:       KKY13709.1  [L=249]
Description: putative small nuclear ribonucleoprotein a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-60  203.2   0.8    2.2e-60  203.2   0.8    1.4  2  LRR_9     Leucine-rich repeat
    7.2e-05   23.1   7.5    7.2e-05   23.1   7.5    3.9  5  LRR_4     Leucine Rich repeats (2 copies)
    0.00013   21.7   8.7    0.00013   21.7   8.7    3.1  3  LRR_8     Leucine rich repeat
     0.0041   16.9   0.4      0.012   15.3   0.4    1.8  1  HTH_38    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.032   14.8   0.4      0.069   13.8   0.1    1.7  2  HTH_32    Homeodomain-like domain
       0.11   12.6   1.5        3.7    7.7   0.1    2.8  2  DUF1707   Domain of unknown function (DUF1707)
       0.11   11.9   2.6       0.23   10.9   2.6    1.5  1  DUF4349   Domain of unknown function (DUF4349)
       0.18   10.5   0.0       0.23   10.1   0.0    1.1  1  HgmA      homogentisate 1,2-dioxygenase
        2.8    8.2   9.1        4.8    7.5   0.8    4.6  5  LRR_6     Leucine Rich repeat


Domain annotation for each model (and alignments):
>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.2   0.8   1.1e-63   2.2e-60       3     166 ..       2     164 ..       1     173 [. 0.96
   2 ?   -3.6   0.1       3.4   6.8e+03     152     167 ..     205     220 ..     201     228 .. 0.56

  Alignments for each domain:
  == domain 1  score: 203.2 bits;  conditional E-value: 1.1e-63
       LRR_9   3 kltaelikqsaqyinairereldlrgykipvienlGatldqfdtidlsdndirkldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelq 101
                 +ltaeli++s +y+n++ ereldlrg+kip ienlG + d  d+id++dndi  l +fPl+ rl+tlll+ nri +i++++++++Pnl++lvlt+n+++
  KKY13709.1   2 RLTAELIHNSLSYLNPLNERELDLRGHKIPAIENLGVAKD-HDAIDFTDNDIASLSNFPLIPRLQTLLLARNRISQIQNNIANSIPNLTTLVLTSNNIN 99 
                 8*************************************99.5********************************************************* PP

       LRR_9 102 eladldPlaslkklellsllknpvtnkkeyrlyviyklkqlrlldfrkvklkereeaeklfkskk 166
                 eladldPl   ++l+ lsll+npv +k++yr+++i++l++lr ldf+++k +ere+a++lf + +
  KKY13709.1 100 ELADLDPLRLCSRLTHLSLLENPVRRKENYRSWLIWRLPSLRFLDFERIKDAEREKAAELFGTAE 164
                 *************************************************************8754 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.4
       LRR_9 152 lkereeaeklfkskkg 167
                  +er+  ek+ +  k+
  KKY13709.1 205 DEERKRVEKMIREAKS 220
                 4566666666655443 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       2.3   4.6e+03      27      30 ..      22      25 ..       8      37 .. 0.57
   2 ?   -2.6   0.1       4.5   8.9e+03       9      18 ..      48      57 ..      45      60 .. 0.57
   3 !   23.1   7.5   3.6e-08   7.2e-05       1      42 [.      62     107 ..      62     109 .. 0.80
   4 !    8.7   0.8    0.0012       2.3      11      33 ..      99     121 ..      97     131 .. 0.85
   5 ?    4.2   0.2     0.032        63       2      30 ..     112     145 ..     111     152 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.3
                EEE- CS
       LRR_4 27 eLdL 30
                eLdL
  KKY13709.1 22 ELDL 25
                3334 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.5
                -SS---E-S- CS
       LRR_4  9 snNqltdipl 18
                 +N + ++++
  KKY13709.1 48 TDNDIASLSN 57
                4566666655 PP

  == domain 3  score: 23.1 bits;  conditional E-value: 3.6e-08
                 SS--EEE--SS---E-S-.HHH.-TT--EEE-..-S.-----GGGG CS
       LRR_4   1 pnLevLdLsnNqltdipl.lek.lpnLkeLdL.sgN.nlitdldeL 42 
                 p+L++L L+ N+++ i++ +++ +pnL++L L s+N n + dld+L
  KKY13709.1  62 PRLQTLLLARNRISQIQNnIANsIPNLTTLVLtSNNiNELADLDPL 107
                 79****************95555*********54445666666666 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.0012
                 S---E-S-HHH-TT--EEE-.-S CS
       LRR_4  11 NqltdiplleklpnLkeLdLsgN 33 
                 N l d+++l+ +  L++L+L +N
  KKY13709.1  99 NELADLDPLRLCSRLTHLSLLEN 121
                 789*******7777*****9899 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.032
                 S--EEE--SS---.E-S-....HHH-TT--EEE- CS
       LRR_4   2 nLevLdLsnNqlt.dipl....leklpnLkeLdL 30 
                 +L++L+L  N ++ + +     ++ lp+L+ Ld 
  KKY13709.1 112 RLTHLSLLENPVRrKENYrswlIWRLPSLRFLDF 145
                 6999999998999444446554338999999986 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2       1.5   3.1e+03      32      42 ..       7      17 ..       6      18 .. 0.80
   2 !   21.7   8.7   6.3e-08   0.00013       1      57 [.      62     119 ..      62     123 .. 0.83
   3 ?    2.1   0.4     0.081   1.6e+02      26      55 ..     112     144 ..     108     147 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.5
                --SS---GGGG CS
       LRR_8 32 LsnNllttlsp 42
                L +N+l+ l+p
  KKY13709.1  7 LIHNSLSYLNP 17
                77999999886 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 6.3e-08
                 TT-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GG.GGGGGTT--S-.EEE-- CS
       LRR_8   1 pnLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttl.spgafsgLpsLrsLdLs 57 
                 p+L++L L +Nr++ ++    ++ +nL++L L++N+++ l + + ++ +++L++L L 
  KKY13709.1  62 PRLQTLLLARNRISQIQNNIANSIPNLTTLVLTSNNINELaDLDPLRLCSRLTHLSLL 119
                 79*************************************7144555556677777775 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.081
                 T--EEE--SS---G...GGGGGGTT--S-.EEE CS
       LRR_8  26 nLkvLdLsnNlltt...lspgafsgLpsLrsLd 55 
                 +L++L+L +N  ++    +   ++ LpsLr+Ld
  KKY13709.1 112 RLTHLSLLENPVRRkenYRSWLIWRLPSLRFLD 144
                 566666666644331112233478999999998 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.4   6.1e-06     0.012       4      28 ..     202     226 ..     200     227 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.1e-06
      HTH_38   4 hLsleeReeIerllaeGlslreIAr 28 
                 +L+ eeR + e+++ e +sl eIA+
  KKY13709.1 202 KLTDEERKRVEKMIREAKSLQEIAQ 226
                 7***********************8 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       6.9   1.4e+04      28      41 ..     147     160 ..     146     174 .. 0.70
   2 ?   13.8   0.1   3.5e-05     0.069      22      56 ..     193     227 ..     178     238 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6.9
      HTH_32  28 klsdevrariiall 41 
                 ++ d++r++  +l 
  KKY13709.1 147 RIKDAEREKAAELF 160
                 57788888877775 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3.5e-05
      HTH_32  22 rrgrpr...klsdevrariiallreeprWsprqlaarl 56 
                  +g +    kl+de+r+r+ +++ +e + s++++a+ l
  KKY13709.1 193 ASGEKAlrvKLTDEERKRVEKMI-RE-AKSLQEIAQ-L 227
                 3454433358*************.77.78*****99.5 PP

>> DUF1707  Domain of unknown function (DUF1707)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1    0.0019       3.7       2      18 ..     147     163 ..     146     165 .. 0.90
   2 ?    3.2   0.2     0.047        93       3      18 ..     203     218 ..     201     235 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0019
     DUF1707   2 RasdadReravelLrea 18 
                 R++da+Re+a+el ++a
  KKY13709.1 147 RIKDAEREKAAELFGTA 163
                 9**********998766 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.047
     DUF1707   3 asdadReravelLrea 18 
                 ++d++R+r+ +++rea
  KKY13709.1 203 LTDEERKRVEKMIREA 218
                 6799999999999987 PP

>> DUF4349  Domain of unknown function (DUF4349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.6   0.00012      0.23      94     127 ..     200     233 ..     198     236 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
     DUF4349  94 RlkaleasedrllallekaksvedlleiereLse 127
                 R+k   ++++r+++++++aks++++ ++e+eL+e
  KKY13709.1 200 RVKLTDEERKRVEKMIREAKSLQEIAQLEKELNE 233
                 8899999*************************97 PP

>> HgmA  homogentisate 1,2-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00012      0.23      46      99 ..     124     177 ..     114     204 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00012
                 -GGG--EEEEEESS-TT-S---EE--..-TB----CCCS----S-EEE-S---- CS
        HgmA  46 prsenkrsWlyrirPsvahepfekleeaeeklvaelkeeasapnqlrWkPlelp 99 
                  r+en rsWl   +Ps +   fe++++ae++++ael ++a++p+ l  k l + 
  KKY13709.1 124 RRKENYRSWLIWRLPSLRFLDFERIKDAEREKAAELFGTAEEPSALASKILGVK 177
                 699********************************9999999999887776665 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0       0.3     6e+02       6      15 ..      21      30 ..      21      30 .. 0.90
   2 ?   -0.9   0.0       1.2   2.4e+03       8      15 ..      45      52 ..      44      54 .. 0.83
   3 ?   -1.1   0.0       1.3   2.6e+03       4      16 ..      63      75 ..      62      75 .. 0.84
   4 ?    7.5   0.8    0.0024       4.8       3      15 ..      86      98 ..      84      99 .. 0.90
   5 ?   -0.1   0.2      0.66   1.3e+03       2      10 ..     110     118 ..     109     123 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.3
       LRR_6  6 teLdLsgNdI 15
                +eLdL+g++I
  KKY13709.1 21 RELDLRGHKI 30
                79*****988 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.2
       LRR_6  8 LdLsgNdI 15
                 d ++NdI
  KKY13709.1 45 IDFTDNDI 52
                5899***9 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.3
       LRR_6  4 hLteLdLsgNdIg 16
                 L++L L+ N I+
  KKY13709.1 63 RLQTLLLARNRIS 75
                589999****995 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0024
       LRR_6  3 thLteLdLsgNdI 15
                ++Lt+L L++N+I
  KKY13709.1 86 PNLTTLVLTSNNI 98
                79**********9 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.66
       LRR_6   2 nthLteLdL 10 
                 ++ Lt+L+L
  KKY13709.1 110 CSRLTHLSL 118
                 789****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      677  (0.0377601); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 1755.65
//
Query:       KKY13710.1  [L=603]
Description: putative calcium proton exchanger [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-47  160.2  32.7    8.2e-24   84.3  16.8    2.2  2  Na_Ca_ex     Sodium/calcium exchanger protein
  ------ inclusion threshold ------
      0.064   13.5   0.0         26    5.0   0.0    3.7  3  HemY_N       HemY protein N-terminus


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   8.0   4.8e-27   4.3e-23       4     150 ..     224     385 ..     222     386 .. 0.90
   2 !   84.3  16.8   9.1e-28   8.2e-24       2     150 ..     458     600 ..     457     601 .. 0.89

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 4.8e-27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCHH CS
    Na_Ca_ex   4 vlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslkld 102
                 vlf++ +++i++la++l+ ++eeia     +g+++G +l+A ++++ Eli+siia+l++ev ++ ++++Gs + nlllv+G+++++g+  ++ e+  ++
  KKY13710.1 224 VLFAVNFIAIIPLAAMLSYATEEIA---MRTGETIGGLLNASFGNAVELIVSIIALLKDEVLVVKSSLIGSMLSNLLLVLGMCFFFGG-INRVEQ-HFN 317
                 79***********************...799*********************************************************.555555.677 PP

                 HHHHHHHHHHHHHHHHHTCHHHHH....................HTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 103 lgllllvallllllvlllllplfv....................pgrltvleglvllllYalylvlsl 150
                 + + +++a ll l++  l++p+++                       l++ ++++ll++Y++yl+++l
  KKY13710.1 318 VTVAQTAASLLALAIGSLIIPTAFeqrssddgsngssvneregnLAPLSRGTAVILLIVYGCYLYFQL 385
                 755555555555555555889999*******************999********************98 PP

  == domain 2  score: 84.3 bits;  conditional E-value: 9.1e-28
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECC CS
    Na_Ca_ex   2 lfvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslk 100
                 +f+++i+s++l++++a+f+v+ ++ei+k   is++++Gl+l+++++++ E+++++++a+++++dlaig ++Gs +++ llv++li+++g+    ++ ++
  KKY13710.1 458 AFATLIISTVLVAICAEFMVDGINEISK--SISKTFVGLILVPIVGNAAEHATAVTVAIKDKMDLAIGVAVGSSMQIALLVLPLIVILGW-ITGHNDMT 553
                 6899***********************8..**********************************************************99.55555678 PP

                 HHHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 101 ldlgllllvallllllvlllllplfvpgrltvleglvllllYalylvlsl 150
                 + +  +++ a+l+++++l+ +l+ +  g+  +leg++l+ lY+l+++  +
  KKY13710.1 554 FFFDTFQI-AVLFISILLVNYLIQD--GKSHWLEGVLLMNLYVLIALACW 600
                 88866665.5556666777777774..*****************998766 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.73   6.6e+03      44      68 ..      28      52 ..      23      58 .. 0.74
   2 ?    5.0   0.0     0.003        26      15      61 ..     366     412 ..     359     420 .. 0.88
   3 ?    3.5   0.1    0.0086        77      12      36 ..     451     475 ..     447     492 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.73
      HemY_N 44 parvrrwrrrrrerkarealseGli 68
                 ++vr+ ++ +r++  ++  +eG  
  KKY13710.1 28 FRKVRSNSKSHRQKNVHRDAEEGHA 52
                5678888888888888888888865 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.003
      HemY_N  15 slvvavlllvllfvllylllrllrlllrlparvrrwrrrrrerkare 61 
                 s  +av+ll++    ly+ l+    ++++p++  + r+ ++++k+++
  KKY13710.1 366 SRGTAVILLIVYGCYLYFQLKTHIEMYNAPSQKTEKRKSNKKEKGEA 412
                 66789**************************9999999888888864 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.0086
      HemY_N  12 ietslvvavlllvllfvllylllrl 36 
                  e+s++va++ l++  vl+ ++  +
  KKY13710.1 451 PELSVWVAFATLIISTVLVAICAEF 475
                 599*******999999988776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       911  (0.0508115); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 3933.47
//
Query:       KKY13711.1  [L=1650]
Description: putative vacuolar membrane-associated protein iml1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-99  333.3   0.0    1.6e-99  332.6   0.0    1.2  1  IML1      Vacuolar membrane-associated protein Iml1
      3e-27   94.5   0.7    6.8e-27   93.3   0.7    1.7  1  DEP       Domain found in Dishevelled, Egl-10, and Pleckstrin


Domain annotation for each model (and alignments):
>> IML1  Vacuolar membrane-associated protein Iml1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  332.6   0.0  1.8e-103   1.6e-99       1     265 [.     198     483 ..     198     487 .. 0.93

  Alignments for each domain:
  == domain 1  score: 332.6 bits;  conditional E-value: 1.8e-103
        IML1   1 velvfkdqylsrsdmwrls.selvetcvykgqkisflgsiratvkeiykkgkkvksgyisekTkiifRSesarvvlliqlsrEmwdfeed..gellfek 96 
                 velvf+d ylsr+dmwrl  sel ++++ykgqki flg+i+atvk+iy +g kv s+y+s++T +i+RSesar+v++iq+srEmw+f+++  ge+lf++
  KKY13711.1 198 VELVFRDIYLSRADMWRLLvSELCGKTLYKGQKILFLGTIKATVKTIYAHGTKVASSYFSKNTIPIYRSESARYVIFIQMSREMWNFDSEgtGEILFSR 296
                 8****************998********************************************************************99778****** PP

        IML1  97 vvngflpelFkkWkelktkHlvtivlfsrveydekeleeeaeealkedekgrl......ykDfykvvvdeessedwkeileelkkefakfkrdilleke 189
                 v++gflp+lFk+W++l++kHlvtiv+f+r+eyd ++l +  + +  e +++++      y+Dfy+vv++++ss +w+ il++lkkef+ f rdi+ ++ 
  KKY13711.1 297 VIDGFLPDLFKRWQNLDAKHLVTIVMFARLEYDYHQLVSLGQLHSAELKQSQFdsgrtkYRDFYRVVLSDMSSGQWTLILNALKKEFRVFLRDISIQEA 395
                 ********************************997666555544444433333333346*************************************999 PP

        IML1 190 ekee............kkkrlkgeistaaegniLeainlalnllekhyidrdLkrtgtsiivitpGtGvfevdkellkltterlldng 265
                 +  +             k r++g++s a +gniLeain+a++++ +++idrdL rtg+s++++tpG G+fevd++ll+lt+e+ ld+g
  KKY13711.1 396 SYLQtstantyntaftGKPRIAGRPSLALRGNILEAINIASSHFGRDFIDRDLVRTGISVVIVTPGPGIFEVDRDLLHLTSETYLDHG 483
                 77768999*******9889*****************************************************************9998 PP

>> DEP  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.7   7.6e-31   6.8e-27       1      72 []    1125    1195 ..    1125    1195 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.3 bits;  conditional E-value: 7.6e-31
                  SS-SCEEECTTEEESSE-HHHHHHHHHHHHTS.SSSHHHHHHHHHHHHHCTSCECSSSSHCC--SSSSS-EEE CS
         DEP    1 gvklkdrrkhlktypncftGseavdWLldnld.iedreeAvalgqlLldqgliehvedkhqeFrdskqafYqf 72  
                  gv++ +rr+hl++++ncftG + + WLl+n++ +e+reeA +lg++L+ q+l++hve++h  Frd+ ++fYq+
  KKY13711.1 1125 GVEIVTRRWHLRLHYNCFTGTDFTTWLLQNFKdVETREEAAELGNELMRQKLFYHVEQRHH-FRDG-NYFYQI 1195
                  899**********************************************************.****.9***97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.48
# Mc/sec: 10248.17
//
Query:       KKY13712.1  [L=1104]
Description: putative small g protein signaling modulator 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-44  150.2   0.0    1.7e-42  145.5   0.0    2.3  2  RabGAP-TBC  Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.5   0.0   9.4e-47   1.7e-42       2     192 ..     785     972 ..     784     980 .. 0.92
   2 !    2.0   0.0    0.0078   1.4e+02     194     215 .]    1026    1046 ..    1015    1046 .. 0.84

  Alignments for each domain:
  == domain 1  score: 145.5 bits;  conditional E-value: 9.4e-47
  RabGAP-TBC   2 elRgevWklllgyepevkrlkksekkqeksekeksklekseeske.lsqIkkDvprtfpesesfknkqgqnqLeriLkaysiynpevgYcqGmndivap 99 
                 elR+++W+ ++g++       +    +e+ +  +s+ e+s++++e  sqI+ D+ rt++++ +f++++g  +L+ +L+ay+ +np vgYcqGmn iv+ 
  KKY13712.1 785 ELRPKIWSECSGASA-----LRIPGYYEDLVAASSGAEQSQDDTEvASQIQADIYRTLTDNVFFRYGPGTTKLREVLLAYARRNPTVGYCQGMNMIVGS 878
                 69***********64.....55666677777778888888888888*************88************************************** PP

  RabGAP-TBC 100 lllvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeegldlelfaikwfltlflrefpletvlrlwD.lll 192
                 lll++   e+aFw++v+++e+  + ++y ++l   ++++ vl+e++++++p+l++hl++++++le  +++wfl +f+ +++ e + r+wD +l+
  KKY13712.1 879 LLLIMPTAEDAFWILVAMIENILPAHYYDHGLVASRADQIVLREYVSEVLPRLSSHLEDLSVELEAMTFQWFLSVFTDCLSAEALYRVWDvVLC 972
                 **9999************************************************************************************6666 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.0078
  RabGAP-TBC  194 gekfvllrvalailklleeell 215 
                  g+ ++l+++ala+lkl+e++ll
  KKY13712.1 1026 GS-TFLFQLALALLKLNEPQLL 1046
                  44.55**************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.55
# Mc/sec: 6019.83
//
Query:       KKY13713.1  [L=314]
Description: putative 3-oxoacyl-(acyl-carrier-protein) reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-55  187.5   1.8    3.4e-55  187.2   1.8    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    3.6e-47  160.3   1.2    4.5e-47  160.0   1.2    1.1  1  adh_short        short chain dehydrogenase
    7.8e-11   42.2   1.2    2.2e-10   40.7   1.2    1.7  1  KR               KR domain
  ------ inclusion threshold ------
      0.033   13.3   0.0      0.046   12.9   0.0    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.2   1.8   7.5e-59   3.4e-55       4     234 .]      58     303 ..      53     303 .. 0.92

  Alignments for each domain:
  == domain 1  score: 187.2 bits;  conditional E-value: 7.5e-59
                   TSHHHHHHHHHHHTT-E.EEEEESSGGH.HHHHHHHHHHTTSE.E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGae.vvltdlneea.kkrveelaeelgae.v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                    gIGra A+++a +Ga+ + l+d+++e  + +++el + +++  +   + DV+de++vea+v+ev +++g+lD+++ nagi  +  + f+++s +++
    KKY13713.1  58 IGIGRASAHQFAHNGARaIYLCDYDDEHlETHTRELNQLYPQVkIhpRRFDVSDEAAVEAVVREVIAQYGRLDVMFANAGIIGQ-PTIFTQVSGKDM 153
                   59**************97899*******9999***999998555679************************************9.999********* PP

                   HHHHHHHTHHHHHHHHHHHHHCTSC........CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT CS
  adh_short_C2  96 draldvnlyslfllakaalplmkeg........gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg 184
                    ++l++n+ ++fl+ak+a+++m+ +        gsi+ ++sv++ r+ ++ + y+a+Kaa+++l++++A++l   g+R+Na++pg+i+T ++  + +
    KKY13713.1 154 LNTLNINTVGAFLCAKYAAQAMQITskekaypsGSIMLTASVAGLRSNAGSTDYSASKAAVISLAQTMAYQLSGTGVRINAICPGVIETGMTLPMYE 250
                   ********************88644445799************************************************************665555 PP

                   ...HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 185 ...fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                      ++  ++++ +  p++r + ++eva++alfL sdeasy++Gq  +v gGl+
    KKY13713.1 251 aarERGTEKKIGQLNPMRRGAVADEVARVALFLGSDEASYVNGQAWAVCGGLS 303
                   3337779********************************************86 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0   1.2     1e-50   4.5e-47       1     189 [.      47     247 ..      47     253 .. 0.96

  Alignments for each domain:
  == domain 1  score: 160.0 bits;  conditional E-value: 1e-50
                 SEEEEESTTS..HHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSG CS
   adh_short   1 kvvlvtGass..GIGraiakelakeGakvvv.vdrseekleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpf 93 
                 kv++vtGa s  GIGra a+++a +Ga+ +  +d+ +e le+   el+++  + k+++ ++Dv+d+++vea+v+++++++g+ldv+ +NAGi  +++ f
  KKY13713.1  47 KVIVVTGANSpiGIGRASAHQFAHNGARAIYlCDYDDEHLETHTRELNQLypQVKIHPRRFDVSDEAAVEAVVREVIAQYGRLDVMFANAGIiGQPTIF 145
                 89******9888****************9999*******************99***************************************888999* PP

                 GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH......HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHH CS
   adh_short  94 selseeewervievNltgvflltravlpaml......kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdm 186
                  ++s +++ +++++N +g+fl+++ +++am       +  sG+I  ++Svag+ ++ag + YsAsKaav++l++++a +l+ tg+r+na++PG+++T+m
  KKY13713.1 146 TQVSGKDMLNTLNINTVGAFLCAKYAAQAMQitskekAYPSGSIMLTASVAGLRSNAGSTDYSASKAAVISLAQTMAYQLSGTGVRINAICPGVIETGM 244
                 ******************************99998777789********************************************************** PP

                 HHH CS
   adh_short 187 ake 189
                 + +
  KKY13713.1 245 TLP 247
                 865 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   1.2     5e-14   2.2e-10       4     165 ..      50     223 ..      47     235 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 5e-14
                 EEETTTS..HHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT..T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE-------.--T CS
          KR   4 litGGlG..gLGlelarwlaekgarhlvllsRsaaadedskaliaeleal..gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrd.kll 97 
                 ++tG+    g+G++ a++ a++gar + l+  +   de+ ++ ++el++l  +++++ ++ Dvsd++avea+++e+ a+ +++   +  Ag++ + + +
  KKY13713.1  50 VVTGANSpiGIGRASAHQFAHNGARAIYLCDYD---DEHLETHTRELNQLypQVKIHPRRFDVSDEAAVEAVVREVIAQYGRLDVMFANAGIIGQpTIF 145
                 788887644899******************999...455555667777766699**********************************99998652556 PP

                 TT--HHHHHHHHTTTTHHHHHHHHHTTT..........S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHH CS
          KR  98 eemtaedleqvlapKvkGawnLhelled..........esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrs 165
                 ++++ +d+ + l+    Ga    ++ ++           +   ++l++S+agl  +ag ++Y+a  a + +la++ + 
  KKY13713.1 146 TQVSGKDMLNTLNINTVGAFLCAKYAAQamqitskekaYPSGSIMLTASVAGLRSNAGSTDYSASKAAVISLAQTMAY 223
                 6677777766666666665544444433333333344567889***********************999999988764 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     1e-05     0.046       1      76 [.      49     122 ..      49     194 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1e-05
                      EEEETTTSH..HHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT.. CS
  Polysacc_synt_2   1 vlvtGagGs..iGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel 76 
                      ++vtGa     iG++  +q++++ ++ i+l + d+ +l + ++el++ + + k+    +p   dv d++ +e +++e+
       KKY13713.1  49 IVVTGANSPigIGRASAHQFAHNGARAIYLCDYDDEHLETHTRELNQLYPQVKI----HPRRFDVSDEAAVEAVVREV 122
                      7899999862267999*****************************988888555....46688999988888777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.49
# Mc/sec: 1930.39
//
Query:       KKY13714.1  [L=356]
Description: putative hit finger domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-08   32.6  10.0      1e-07   31.6  10.0    1.5  1  zf-HIT       HIT zinc finger
  ------ inclusion threshold ------
       0.15   12.0   5.3       0.13   12.3   2.0    2.1  2  PGC7_Stella  PGC7/Stella/Dppa3 domain


Domain annotation for each model (and alignments):
>> zf-HIT  HIT zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6  10.0   1.2e-11     1e-07       3      30 .]      13      39 ..      11      39 .. 0.93

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.2e-11
                -B-TTT-SB-SEE-TTT--EESSHHHHH CS
      zf-HIT  3 klCgvCgfpakYkCpkCntryCSLrCyk 30
                 lC++C+ pakYkCp+C++++CSL C k
  KKY13714.1 13 DLCAICH-PAKYKCPRCSIKTCSLPCIK 39
                69****8.******************86 PP

>> PGC7_Stella  PGC7/Stella/Dppa3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.0   1.4e-05      0.13      65     113 ..     130     178 ..     101     185 .. 0.85
   2 ?    0.1   0.1     0.079   7.1e+02      20      69 ..     184     232 ..     175     242 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.4e-05
  PGC7_Stella  65 qyreektlqerrweRtllsqrKkaflkhirrrrldhmapykvereqris 113
                  + + +kt +++rw++  + q+K a++  +r +r  ++    +++ q+i 
   KKY13714.1 130 RSKQNKTHWNQRWVQLHANQKKTALTTRSRHKRISWTVEWILQDGQKIF 178
                  567789*******************************999999999985 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.079
  PGC7_Stella  20 teedSqevsaasqpss.EtlvlglskLtlnPgaklpaslpegllqqqyree 69 
                  ++++Sq+ ++a    + +  + +l +   nPg++  a    +  +   re+
   KKY13714.1 184 STTISQAFANAVPKKFqQSRKRKLDETCQNPGSDTTAI--SDEHRTVTREN 232
                  66788888888888887778888888888888886654..33344455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.35s 00:00:00.99 Elapsed: 00:00:00.58
# Mc/sec: 1862.91
//
Query:       KKY13715.1  [L=418]
Description: putative short chain dehydrogenase reductase family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-14   52.1   0.0    4.9e-13   49.0   0.0    2.1  2  adh_short        short chain dehydrogenase
    1.7e-06   27.7   0.0    4.3e-06   26.5   0.0    1.7  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    2.5e-06   27.5   0.0    4.4e-06   26.7   0.0    1.3  1  KR               KR domain
     0.0019   17.7   0.1     0.0082   15.6   0.1    1.9  1  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.011   14.8   0.0      0.017   14.3   0.0    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.015   14.7   0.1        3.4    7.0   0.0    2.1  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   1.7e-16   4.9e-13       1     124 [.      54     185 ..      54     205 .. 0.87
   2 ?    0.4   0.0      0.12   3.7e+02     145     170 ..     220     245 ..     211     273 .. 0.80

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 1.7e-16
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHH..HHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHH..SSESEEEE---S.S--S CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekl..eevakelkee..gakalaiqvDvtdreevealvekavkkl..gkldvLvnNAGi.tgsg 91 
                 kvv+vtG++sGIG +i+k+la++Ga++++ +  ++++l     ++ l+    ++ ++a +vD+++  +++++  k v++    +ld+++ +A   t s+
  KKY13715.1  54 KVVMVTGGTSGIGAEIVKQLATRGAQIILlTHHNPSDLflVDYIEDLRTVtgNELIYAENVDLSSLYSIRQFATKWVDNAppRRLDMIIFCANTmTPSR 152
                 89***************************6777777752255566666668444477778*******************9999*********877999* PP

                 SGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH CS
   adh_short  92 pfselseeewervievNltgvflltravlpaml 124
                  +s+l+ +  e+  +vN+ ++f+l   + pa+ 
  KKY13715.1 153 GVSKLTLDGLEEEWAVNYLSTFHLLSILSPAIR 185
                 ************************999999865 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.12
                 TBHHHHHHHHHHHHHHHHHHHHHGGG CS
   adh_short 145 gvaaYsAsKaavagltrslakelapt 170
                 g  +Y  sK a+  +++s++k l ++
  KKY13715.1 220 GSLSYKRSKLALMIFVQSFQKHLDSY 245
                 5568999************9998776 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.4e-09   4.3e-06       3     120 ..      62     187 ..      58     245 .. 0.85
   2 ?   -2.7   0.0       1.1   3.4e+03      45      69 ..     332     356 ..     300     376 .. 0.55

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.4e-09
                   TTSHHHHHHHHHHHTT-EEEEEESSGGH....HHHHHHHHHHTTSE.E..EE--TTSHHHHHHHHHHHHHHH..SSEEEEEE-----EGCSS-GGGH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneea....kkrveelaeelgae.v..lecDVtdeeqvealveevvekf..gklDilvnnagiapklkgpflet 90 
                    sgIG++i+k+la +Ga+++l   ++ +     + +e+l + +g+e +   ++D ++  ++++++ + v++    +lD+++ +a  +++ +  + ++
    KKY13715.1  62 TSGIGAEIVKQLATRGAQIILLTHHNPSdlflVDYIEDLRTVTGNElIyaENVDLSSLYSIRQFATKWVDNAppRRLDMIIFCANTMTP-SRGVSKL 157
                   59****************9988877766444457888888888988645789********************999*************9.99***** PP

                   -HHHHHHHHHHHTHHHHHHHHHHHHHCTSC CS
  adh_short_C2  91 sreefdraldvnlyslfllakaalplmkeg 120
                   + +++++  +vn  s+f+l+  + p+++++
    KKY13715.1 158 TLDGLEEEWAVNYLSTFHLLSILSPAIRAQ 187
                   *********************999977765 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.1
                   EEE--TTSHHHHHHHHHHHHHHHSS CS
  adh_short_C2  45 vlecDVtdeeqvealveevvekfgk 69 
                   +l+  ++de+  +al e  ++++++
    KKY13715.1 332 FLRPEISDEKVAKALWEFSEQQIER 356
                   4555555555555555444444444 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.5e-09   4.4e-06       3     143 ..      56     206 ..      54     212 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.5e-09
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-E.EEE----TT-HHHHHHHHHHHHHHS..S---EEEE------.--- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gae.vevvaaDvsdkdavealleeikaee..ppikGvihaAgvlr.dkl 96 
                 +++tGG+ g+G e++++la +ga+ ++l+  + ++d    + i+ l+   g e + + ++D+s+  ++++  ++  +++  +++  +i +A ++   + 
  KKY13715.1  56 VMVTGGTSGIGAEIVKQLATRGAQIILLTHHN-PSDLFLVDYIEDLRTVtGNElIYAENVDLSSLYSIRQFATKWVDNAppRRLDMIIFCANTMTpSRG 153
                 78*********************988888777.77777778999999976776256678*************99998887788********99884678 PP

                 TTT--HHHHHHHHTTTTHHHHHHHHHTTT......S--SEEEEEEEHHHHH-- CS
          KR  97 leemtaedleqvlapKvkGawnLhelled......esldffvlfSSiagllgs 143
                 ++++t + le+  a     + +L  +l++       + d+ +lfS +++ +g 
  KKY13715.1 154 VSKLTLDGLEEEWAVNYLSTFHLLSILSPairaqpPDRDVRILFSTCSSYIGG 206
                 9999*999999999999999999888877676666678899999999998886 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   2.8e-06    0.0082       1     157 [.      56     239 ..      56     245 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.8e-06
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC....................EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl....................elveldltdrsalerlfkeeqpdavihlAavggvaa 79 
                 ++VtG+t  iG+ +vk+l+++g ++i l++ + ++ +  +  +                    +l+ +     + ++++  + + d++i +A   ++++
  KKY13715.1  56 VMVTGGTSGIGAEIVKQLATRGAQIILLTHHNPSDLFLVDY-IedlrtvtgneliyaenvdlsSLYSIRQFATKWVDNAPPR-RLDMIIFCANTMTPSR 152
                 68****************************95555443332.2577888888777554444444444444444444444443.7788888877666555 PP

                 HHHS.....HHHHHHHHTHHHHHHHHHHH........HHTCTEEEEEEEGGGGTSCSS.SSBSTCSTTS----SSHHHHHHHHHHHHHHHHH CS
   Epimerase  80 ssed.....padfieknlqgtlnlleaar........kagvkrllflsSsevYGkdae.qpkeettltgplkpnspYaaaKlageklveaya 157
                  +++      ++ +  n   t +ll+ ++        +++v r+lf   s+  G   + + +e+ t++g    +  Y ++Kla    v++++
  KKY13715.1 153 GVSKltldgLEEEWAVNYLSTFHLLSILSpairaqppDRDV-RILFSTCSSYIGGTLKlIDTEKATKNG----SLSYKRSKLALMIFVQSFQ 239
                 44331111156677778888888887777666555555555.666655555555444435344444444....4477788877777777776 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   5.5e-06     0.017       1      39 [.      56      94 ..      56     126 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.5e-06
                     EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHH CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyei 39
                     v+vtG++  iG e+v+q++++ ++ i+l  ++   l+ +
       KKY13715.1 56 VMVTGGTSGIGAEIVKQLATRGAQIILLTHHNPSDLFLV 94
                     8********************999999998887776655 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1    0.0028       8.2       1      67 [.      57     119 ..      57     128 .. 0.73
   2 ?    7.0   0.0    0.0011       3.4      99     170 ..     166     241 ..     156     247 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0028
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEE..EESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivr..rsssfntgriehlakdpkeeleenlklhkgDltDsssl 67 
                    ++TG++  iG+ ++++L ++g +++ +++   s++f ++ ie l++          +l++++  D ssl
     KKY13715.1  57 MVTGGTSGIGAEIVKQLATRGAQIILLTHhnPSDLFLVDYIEDLRTVTG------NELIYAENVDLSSL 119
                    69*********************99987611456678888888875443......24555555555555 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0011
                    HHHHTHHHHHHHH....HHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHHH CS
  GDP_Man_Dehyd  99 aevnvlGtlrLLe....airalglekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyrea 170
                    + vn l t++LL     aira   +++vr++++  s   G + +   tE+   +    Y  +Kl+   +v+++++ 
     KKY13715.1 166 WAVNYLSTFHLLSilspAIRAQPPDRDVRILFSTCSSYIGGTLKLIDTEKATKNGSLSYKRSKLALMIFVQSFQKH 241
                    6799999**999843345666666789*****9999999***9**********************99999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       958  (0.053433); expected 358.6 (0.02)
Passed bias filter:                      744  (0.041497); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.34s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 2581.48
//
Query:       KKY13716.1  [L=556]
Description: putative sec1 family superfamily [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-85  286.6   0.0    7.8e-85  286.2   0.0    1.1  1  Sec1       Sec1 family
  ------ inclusion threshold ------
       0.11   12.0   0.0       0.19   11.3   0.0    1.3  1  OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS famil


Domain annotation for each model (and alignments):
>> Sec1  Sec1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.2   0.0   8.7e-89   7.8e-85     157     575 .]      10     440 ..       7     440 .. 0.79

  Alignments for each domain:
  == domain 1  score: 286.2 bits;  conditional E-value: 8.7e-89
                 HHHHHHHH-..--EEEE-TT-.....HHHHHHHH..............HHHHTTT--SS--EEEEE-GGG-SSTTTS---BHHHHHHHHS--B..TEEE CS
        Sec1 157 LlsvllslekkiPiirykgsa.....asmvakkladelkekids....kknfesessrqrpvLiIlDRsvDlvtpllhqwTYqaliddllggl..nnnn 244
                 ++s+++sl +  Pi+ry++++     a  ++ +la+ ++e++d     +++f+++s+r+r vL+I+DRs Dl +pl+h++TYqal+ d+l+ +  +++ 
  KKY13716.1  10 IVSICVSL-GEHPIVRYYRPRnptheAGVLCSHLARFVQEELDLfaryHPEFPPQSPRPRGVLLITDRSLDLFSPLVHEFTYQALALDVLP-IsdGDKV 106
                 89******.679******9999****55555555555554444440024556666***********************************9.5563444 PP

                 EEE--SS....SEEEEEE--TT..-TTHHHHTTSBHHHHHHHHHHHHHHHHHHH.HTTT....-..TTHHHHHHHHHH-GGGHHHHHHHHHHHHHHHHH CS
        Sec1 245 vvleeep....keekeaelvesssDeffaelrhlnfgevgeklkkeakeyqeen.ekkrn.gak..esiadlkkfvaklpelqeekkklskHtnlaeel 335
                 ++++ ++    +ee++++++ + +D++++ +rh++++++ ekl ++++++++en ++ +n   +  ++++ +k+++  l ++qe k+ +++H+ +ae++
  KKY13716.1 107 TYKYISNqgrpNEEEKHVDIGE-KDKIWVANRHMHMKDLLEKLVADFNKFRAENpQFADNdD-EaaTNVNTIKDMLVGLSGFQEGKEGFALHLEMAEKC 203
                 4444444586666666666666.9***********************************944.469********************************* PP

                 HHHS-HHH.HHHHHHHHHHHH..SS--..B--..-HHHHHHHH..-TTS-H.HHHHHHHHHHHH...-B.-HT--GG....GGHHHH....GGGGG... CS
        Sec1 336 lkevkkrkldellelEqdlat..gesd.kkikekkvieeliad..deptseledklRLlllyslvegglkekelkellrelvqsaly....gleylktl 425
                 +k++++rkl++++++Eq+l t  +e d +k   +++ e++++   d++++  +d+lRLllly ++++gl + ++++ll     +a +    + e+++ l
  KKY13716.1 204 VKIFQDRKLLDVGSVEQSLSTglDE-DyRK--PRNMAEQVVRLldDDSVTR-DDRLRLLLLYLMYRNGLLPGDIQKLLA----HA-QlppqNGEVIQNL 293
                 *********************7532.4445..5577988888897666777.8************99**9999999944....24.2345544555333 PP

                 .....---.BGGG-------.........---------S...TT-----HHHHHHHHHTTT-S-TTTS-BSS-GGGS----.....------------- CS
        Sec1 426 rsleklgllkkrkgkksskkkss..lklikeeedeesnydlsgvsryaPllvrlvealikgkklssespslskkdpsqees.....ssslrsakktnsa 517
                   l ++++ k+ k+  ++++ +     +  +   e++n     +sr+ P l+ ++++ ikg++++s +p+++ +++++        ++slrsak+t+++
  KKY13716.1 294 D-LLGVRVNKPLKD--AAPPPQPviAVKAPTMPLEDEN----TLSRFEPTLKSILQEQIKGTLDQSIFPFTKVDPNDTMMGpqgdsQASLRSAKPTWAR 385
                 3.446766544333..3333333753344444444444....4899**************99999999999877765554499**9************* PP

                 ---------S-EEEEEEEEEE-HHHHHHHHHHT...TSSSEEEEEEEEE--HHHHHH. CS
        Sec1 518 skesaekkkkqrviVffvGGvTysEiralrllskqekknkeiiigttsilnpksflee 575
                 s++sa++  +qrv+Vf++GG+Ty+E ra+ ++s+  ++++++i+ t+++l+pk f+++
  KKY13716.1 386 SRPSANE-PRQRVLVFMAGGATYAESRACYEVSQ--SMSRDVILTTSHMLTPKLFMRQ 440
                 9999999.7888*****************99997..569****************985 PP

>> OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.1e-05      0.19      44      75 ..     191     222 ..     163     230 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.1e-05
                 HHTHHHHHHHHHTSEEEEEEEE-S-HHHHHHH CS
   OMPdecase  44 tgaklaalarkhgflifeDrKfaDIGntvekq 75 
                  g  l  +++++ ++if DrK+ D+G++++  
  KKY13716.1 191 EGFALHLEMAEKCVKIFQDRKLLDVGSVEQSL 222
                 5566677888999**************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3672.66
//
Query:       KKY13717.1  [L=745]
Description: putative atp-dependent rna helicase suv3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-11   42.5   0.0    1.6e-10   41.3   0.0    1.6  1  Helicase_C  Helicase conserved C-terminal domain
      2e-09   37.2   0.2    5.9e-09   35.7   0.2    1.8  1  SUV3_C      Mitochondrial degradasome RNA helicase subunit C 
  ------ inclusion threshold ------
      0.016   15.1   0.0      0.041   13.7   0.0    1.7  1  TK          Thymidine kinase
      0.094   12.6   0.0       0.22   11.4   0.0    1.7  1  Suv3_C_1    Suv3 C-terminal domain 1


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   3.6e-14   1.6e-10      14     110 ..     331     437 ..     318     438 .. 0.76

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 3.6e-14
                 TTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSSEEEESGGGTSSSTSTTESEEEESSSS....SSH......HH CS
  Helicase_C  14 eeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfn..kgesdvLiatdvaerGidipkvnlVinfdlp....rnv......ts 99 
                  ++g++++    i+ l++  k ++e  g ++a+++g+lp++ r +  + fn  ++++d+L+a+d++++G+++ +++ Vi+  +     + +       s
  KKY13717.1 331 LRKGDCVVCFSIIK-LHSmKKEIEEATGRNCAIVYGSLPSELRAQQARLFNdpDNTYDFLVASDAIGMGLNL-SIKRVIFETVYkfngT-TmdvidiPS 426
                 44445555445555.333368998888************************8889*****************.5888885544444341.1444555** PP

                 HHHHHTTSSST CS
  Helicase_C 100 yiqriGRtgRa 110
                 ++q +GR+gR+
  KKY13717.1 427 LKQIAGRAGRY 437
                 **********7 PP

>> SUV3_C  Mitochondrial degradasome RNA helicase subunit C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.2   1.3e-12   5.9e-09       7      47 ..     618     658 ..     612     658 .. 0.96

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1.3e-12
                 HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH CS
      SUV3_C   7 lhkvldLYlWLSyRfpevFpdrelaeelkkeveekIeeaLe 47 
                 lhk l+LY+WL++Rf ++  +r lae+ k +ve+ ++e+L+
  KKY13717.1 618 LHKGLTLYIWLAFRFADILESRVLAEHTKILVERNMDEVLK 658
                 8**************************************96 PP

>> TK  Thymidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   9.3e-06     0.041       2      91 ..     170     264 ..     169     271 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.3e-06
          TK   2 sielilgpmfaGKsteLlrrvkryqlaekk..vvvikaakdnRyseg....kvvthdgis.leakksktssleeikeeleeedvdvvlvDEaqFfeq 91 
                 +i+l +gp ++GK+ + l+r +++++  +    +++ +++ +R +++     +vt d+i  +eak     ++++++ +  ++++dv ++DE q + +
  KKY13717.1 170 HIHLHVGPTNSGKTYNALKRLEKAETGFYAgpLRLLAHEIYTRLNAAgvqcGLVTGDEIRgMEAK--PKITSHTVEMVPLHKEYDVGVIDEIQMLAH 264
                 69*********************998766533799*********987444455677777536777..44444445555555569*********9983 PP

>> Suv3_C_1  Suv3 C-terminal domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.9e-05      0.22       3      43 .]     543     583 ..     541     583 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.9e-05
    Suv3_C_1   3 AelIqpipLSlrdRytFcmAPvntrdpkavaaLvkfArqya 43 
                 A+ ++ i+LS   ++++  AP  +rd + + + +++A ++a
  KKY13717.1 543 ARNLEGIDLSPSTKFVLTAAPAAMRDGSIKLIYQELAMCIA 583
                 899***********************988877777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (745 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.52
# Mc/sec: 4333.80
//
Query:       KKY13718.1  [L=1221]
Description: putative atp-dependent rna helicase dhx8 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-23   82.4   1.3      6e-23   81.2   0.1    2.3  2  HA2          Helicase associated domain (HA2)
    9.3e-21   74.0   0.0    1.8e-20   73.0   0.0    1.5  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    3.2e-14   53.2   0.0    8.7e-14   51.8   0.0    1.8  1  Helicase_C   Helicase conserved C-terminal domain
    6.4e-11   42.4   1.0    1.6e-10   41.2   1.0    1.7  1  S1           S1 RNA binding domain
    1.5e-05   25.3   0.1    3.6e-05   24.0   0.1    1.6  1  AAA_22       AAA domain
    2.8e-05   24.0   0.1    6.4e-05   22.8   0.1    1.5  1  DEAD         DEAD/DEAH box helicase
     0.0021   17.8   0.0     0.0045   16.7   0.0    1.5  1  AAA_30       AAA domain
      0.003   16.7   0.0      0.008   15.3   0.0    1.7  1  T2SSE        Type II/IV secretion system protein
  ------ inclusion threshold ------
      0.012   15.9   0.1      0.027   14.8   0.1    1.5  1  AAA_19       AAA domain
      0.023   13.9   0.0      0.058   12.6   0.0    1.7  2  DUF2075      Uncharacterized conserved protein (DUF2075)
      0.037   14.2   0.2       0.44   10.7   0.1    2.9  2  AAA_33       AAA domain
      0.068   13.6   0.0       0.25   11.7   0.0    1.9  1  AAA_16       AAA ATPase domain
      0.077   12.6   0.0       0.18   11.4   0.0    1.6  1  SRP54        SRP54-type protein, GTPase domain
        0.1   13.1   0.1        3.1    8.3   0.1    2.9  1  ABC_tran     ABC transporter
       0.16   11.9   0.4          5    7.0   0.0    2.7  3  Microtub_bd  Microtubule binding


Domain annotation for each model (and alignments):
>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       5.9   7.1e+03      79      99 ..     470     490 ..     412     498 .. 0.48
   2 !   81.2   0.1     5e-26     6e-23       1     108 []     949    1037 ..     949    1037 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 5.9
         HA2  79 eekakkkrkeeekarrklahk 99 
                 + ++++k  +e+++r k+a+k
  KKY13718.1 470 SLAKERKDLREQESRDKAAEK 490
                 223333333333333333333 PP

  == domain 2  score: 81.2 bits;  conditional E-value: 5e-26
         HA2    1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeeeeeekakkkrkeeekarrkla 97  
                  Ale L+al+ALd+eg lT lGrkma++P++p lak+L+a+++l   c +e ++ivA+lsv+ +f +++e++++       ++kk+++ + +      
  KKY13718.1  949 ALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVDL--ACSEELLSIVAMLSVQTVFYRPKEKQQQA------DQKKSKFHDPQ------ 1031
                  899*************************************777..**********************9765433......23444444444...... PP

         HA2   98 hkdaegDhltl 108 
                       gDhltl
  KKY13718.1 1032 -----GDHLTL 1037
                  .....999997 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   1.5e-23   1.8e-20       1      81 [.    1095    1170 ..    1095    1172 .. 0.96

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 1.5e-23
                   HHHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHHST CS
  OB_NTP_bind    1 lraillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLllfag 81  
                   +r++l++G++ + arkdp++  ykt+ ++t+v++hpsS+l+     k+ e v+y++lv ttk y++ +tai+p wL++ a+
   KKY13718.1 1095 VRQALCSGFFRNSARKDPQEG-YKTLVEGTPVYMHPSSALFG----KPAEHVIYHTLVLTTKEYMHCTTAIEPKWLVEAAP 1170
                   69****************998.****99*************8....******************************99886 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   7.3e-17   8.7e-14       7     111 .]     757     887 ..     748     887 .. 0.89

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 7.3e-17
                 HHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT........TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSS CS
  Helicase_C   7 lellkleeeggkilifvntidrlek.vklllekk........gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprn 96 
                 +++ +l+e  g+il+f++ +++++  +++l e+         ++ ++++++ lp++ + +i++    g+++v+iat++ae++i+i+++ +Vi+ ++ ++
  KKY13718.1 757 MQI-HLTEPPGDILVFLTGQEEIDTsCEILYERMkalgpgvpELIILPVYSALPSEMQSRIFDPAPPGSRKVVIATNIAETSITIDQIYYVIDPGFVKQ 854
                 333.6899*************9999989996666788899999*****************************************************944 PP

                 H..................HHHHHHHTTSSSTT CS
  Helicase_C  97 v..................tsyiqriGRtgRag 111
                                    ++++qr+GR+gR g
  KKY13718.1 855 NaydpklgmdslivtpisqAQAKQRAGRAGRTG 887
                 3367799999999******************86 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   1.0   1.3e-13   1.6e-10       7      73 ..     253     320 ..     251     322 .. 0.91

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 1.3e-13
                 EEEEEEEEEETTEEEEEET...TTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEE CS
          S1   7 vveGeVtsvtkgGafVelg...ngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriils 73 
                 v++G+Vt + ++GafV+l    ++v+g+v++s +   arv +p++ ++ G++vkvkv  +  +  ri ls
  KKY13718.1 253 VYDGTVTGIKDFGAFVNLSgvrGKVDGLVHVSAMQEGARVNHPSDLVSRGQMVKVKVVSIQGT--RIGLS 320
                 99****************98999*************9********************998776..45555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1     3e-08   3.6e-05       4     126 ..     572     706 ..     568     716 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 3e-08
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka.........erlsseellealeqalrarav.. 91 
                 + ++l+v+G +G+GKTt + ++l ++        ++++++ +t p      ++++++++++g el            r s    ++++++ + +r    
  KKY13718.1 572 QNQLLIVVGDTGSGKTTQVTQYLAEDGF------ANDGLIACTQPRRVAAMSVAKRVAEEVGCELGQevgytirfeDRTSPATRIKYMTDGMLQREIll 664
                 6789*********************843......69****99999999**************99999********744444444577777777777777 PP

      AAA_22  92 ......ielliiDEaqhlr..seealeeLrsllnlsrkgvqli 126
                        +++++DEa+  +  ++ ++  L++ l+ +r +++li
  KKY13718.1 665 dpnlrkYSVIMLDEAHERTiaTDVLFGLLKKTLK-RRPDLKLI 706
                 77799999********953345666666655554.35555555 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   5.3e-08   6.4e-05       5     171 ..     564     715 ..     552     719 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 5.3e-08
                 HHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEET.TSSHHHHHHHHHTTCSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
        DEAD   5 aeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliig.gvaardqlskldngvdiv 101
                 ++ ++++ +++ ++v ++TGsGKT+     + +  +     +   + +  P r  a  +++++ +     ++      +g   + +d  s     ++i 
  KKY13718.1 564 KQLLEAVHQNQLLIVVGDTGSGKTTQVTQYLAEDGF----ANDGLIACTQPRRVAAMSVAKRVAEEVGCeLG----QEVGyTIRFEDRTSPA---TRIK 651
                 56777888999999**********996666665543....455688999**********9999777762133....2233112234444444...999* PP

                 EEEHHHHHH.HHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.H CS
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
        DEAD 102 vgtpgrldd.llstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.k 171
                 ++t g+l++ +l +   nl++ +++ lDEa++       d +  +l+++ +   d k    +iv SATl  +
  KKY13718.1 652 YMTDGMLQReILLDP--NLRKYSVIMLDEAHERTIA--TDVLFGLLKKTLKRRPDLK----LIVTSATLDaD 715
                 *********555544..5*************98886..7777777777744444544....********844 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.8e-06    0.0045      11      98 ..     568     680 ..     563     706 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.8e-06
      AAA_30  11 ealltsgdrvavltGpAGtGKttalkal..reaweaag.......grviglAptgkaAkvLaeelgieastiakllkrlk................... 81 
                 ea++++  ++ +++G  G+GKtt ++++  ++ ++++g       +rv++++  +++A++++ elg e   + ++ +r+                    
  KKY13718.1 568 EAVHQN--QLLIVVGDTGSGKTTQVTQYlaEDGFANDGliactqpRRVAAMSVAKRVAEEVGCELGQEVGYTIRFEDRTSpatrikymtdgmlqreill 664
                 444444..49*************999885445555557************************8888766666666666666666666666777888886 PP

      AAA_30  82 grarlepgtllivDEag 98 
                 +  +l++ ++++ DEa 
  KKY13718.1 665 D-PNLRKYSVIMLDEAH 680
                 3.467788999999985 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.7e-06     0.008     117     151 ..     561     595 ..     514     607 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.7e-06
       T2SSE 117 kiaevlrkavrerglilvsGgTgsGKttllyallk 151
                 k+++ l +av++++l++v G TgsGKtt +   l+
  KKY13718.1 561 KFRKQLLEAVHQNQLLIVVGDTGSGKTTQVTQYLA 595
                 5667788899999***************9876665 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   2.2e-05     0.027       4     129 ..     569     700 ..     564     707 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.2e-05
      AAA_19   4 avealkekvllvtaGpGtGKTrvlkhivallvelgg.....vkpeeillvaftgrAakelrerlaalgae..........atTiHrlalldfddlltea 87 
                 av  +++++l+v++  G+GKT+ +++ +a+   +++      +p++++++++++r a+e+  +l   g+e          +          +++++ ++
  KKY13718.1 569 AV--HQNQLLIVVGDTGSGKTTQVTQYLAEDGFANDgliacTQPRRVAAMSVAKRVAEEVGCEL---GQEvgytirfedrT--------SPATRIKYMT 654
                 55..899**************9988776653333220001123355555555555555555544...33363333333221........2222333333 PP

      AAA_19  88 lelle.eaeeekklqeee.llivDEfqd..vd.elqyrLlkallgek 129
                  ++l+ e   + +l +++ +++ DE+ +  +  ++ + Llk+ l+++
  KKY13718.1 655 DGMLQrEILLDPNL-RKYsVIMLDEAHErtIAtDVLFGLLKKTLKRR 700
                 33444433445677.44559999998762233466677777766555 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       5.2   6.2e+03     199     236 ..      58      95 ..      41     138 .. 0.51
   2 ?   12.6   0.0   4.8e-05     0.058       2      98 ..     574     680 ..     573     695 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 5.2
     DUF2075 199 nfdirvfddleelkkalkeknkesgrsrlvatydakrl 236
                 +f+  ++++++ l  +++ k+k++++ +   + + + +
  KKY13718.1  58 DFPQSLVESIDRLILTMHPKYKDKNKEANTNSAQGTNS 95 
                 55555556666555555555555555444444444444 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.8e-05
     DUF2075   2 avvlVtGvaGtGKtvvllnllael.......eddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsef...kkaeekkeepked 90 
                 ++++V G++G+GKt    + lae            + r+++ +sv ++  + +  +l ++   + + e+ + +++ i+ ++ +   ++   + + +k  
  KKY13718.1 574 QLLIVVGDTGSGKTTQVTQYLAEDgfandglIACTQPRRVAAMSVAKRVAEEVGCELGQEVGYTIRFEDRTSPATRIKYMTDGmlqREILLDPNLRKYS 672
                 6899*******************98877777677799********************99997777778999999999999988997777889999**** PP

     DUF2075  91 vvivDEAh 98 
                 v+  DEAh
  KKY13718.1 673 VIMLDEAH 680
                 ******** PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.3   1.6e+03      75     125 ..      90     156 ..      54     168 .. 0.76
   2 ?   10.7   0.1   0.00037      0.44       1      25 [.     575     604 ..     575     741 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.3
      AAA_33  75 ldatnlsrrerarflklarrlgvp................vrivvvetdeetlkeRlakRaangddr 125
                 +  tn   ++ +r+ ++++ l+vp                ++i+   +d + + e la R+ ng+d 
  KKY13718.1  90 AQGTNSATSDADRKARVFKGLSVPdrelawnddgteptekDAILESAVDTFAMLEGLAGRNGNGTDG 156
                 5678888899999999999999998888888888888888888888888888888888888887654 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00037
      AAA_33   1 lvllvGlpGsGKstlaerllkklg.....a 25 
                 l+++vG  GsGK+t ++++l++ g      
  KKY13718.1 575 LLIVVGDTGSGKTTQVTQYLAEDGfandgL 604
                 789****************99988655444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00021      0.25      14      46 ..     565     595 ..     562     645 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00021
      AAA_16  14 salervrsgrpelvllsGesGvGKsslvrellr 46 
                 ++le+v+++  +l++++G+ G+GK++ v++ l 
  KKY13718.1 565 QLLEAVHQN--QLLIVVGDTGSGKTTQVTQYLA 595
                 578888877..69*************9988774 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00015      0.18       3      60 ..     575     631 ..     573     722 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
                 EEEEEESTTSSHHHHHHHHHHHHHHT..TS-EEEEEESTSSTTHHHHHHHHHHHTTEEEE CS
       SRP54   3 villvGlqGaGKTttlaKLaallkke..gkkvllvaaDtfRaaAveQLktlaeklgvpvi 60 
                 ++++vG +G+GKTt +++   +l ++  +++ l++++   R+aA+   k +ae++g ++ 
  KKY13718.1 575 LLIVVGDTGSGKTTQVTQ---YLAEDgfANDGLIACTQPRRVAAMSVAKRVAEEVGCELG 631
                 6789**********9875...5556645778899999*********99999999997754 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1    0.0026       3.1       8      28 ..     570     590 ..     564     681 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0026
                 EETTSEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLl 28 
                 +++++++ +vG++G+GK+t +
  KKY13718.1 570 VHQNQLLIVVGDTGSGKTTQV 590
                 789999************954 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0042         5      67     102 ..     559     592 ..     508     611 .. 0.74
   2 ?    1.8   0.0      0.18   2.1e+02      90     119 ..     884     914 ..     882     923 .. 0.84
   3 ?   -2.7   0.1       4.2     5e+03      36      90 ..    1022    1089 ..    1009    1093 .. 0.49

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0042
                  CCCCCHHHHHHHHTT--EEEEEEES........... CS
  Microtub_bd  67 vfeeisqlvqsaldgynvcifaygqTGsGKtyTmeg 102
                  vf+  +ql++ +  + n  ++ +g TGsGKt  +++
   KKY13718.1 559 VFKFRKQLLEAV--HQNQLLIVVGDTGSGKTTQVTQ 592
                  555555555543..568899***********77665 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.18
                  ES.................ST-HCHHHHHHH CS
  Microtub_bd  90 gqTGsGKtyTmeg.eeeeagmipraveeife 119
                  g+TG GK + + +    +++m+p ++ ei +
   KKY13718.1 884 GRTGPGKCFRLYTeAAYQSEMLPTTIPEIQR 914
                  89*********99677899999999998866 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 4.2
                   .EEEETTT..................TTTEEEE-SEEEECTTHCCCCCCCCHHHHHHHHTT--EEEEEEE CS
  Microtub_bd   36 kakikfpe...............eekkkkkefsFdrvfeseseqeevfeeisqlvqsaldgynvcifayg 90  
                   + k kf++               ++++ +  + F+  +++   q   +++++q +   +++y   i+++g
   KKY13718.1 1022 QKKSKFHDpqgdhltllnvwngwKKSNFSSPWCFENFIQAR--QMRRAQDVRQQLVTIMQRYRHQIVSCG 1089
                   34445553445566667674443333444444444444443..444456666555556666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.52
# Mc/sec: 7070.68
//
Query:       KKY13719.1  [L=276]
Description: putative alpha beta hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-19   69.4   0.0    1.2e-17   64.0   0.0    2.6  1  Hydrolase_4  Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   6.7e-22   1.2e-17      98     239 .]      35     214 ..      24     214 .. 0.86

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 6.7e-22
  Hydrolase_4  98 pdkvaglilsaPalkikaklkappllklllkllgkllpklqvsnnlkadslsrdpevvaayeadplvhgkitvrlllelldamkrle...eraakit. 191
                  p+++ag+il aP+++++++  ++ l+ ++ +l++k+lp++q++n+ +++++sr+p+v +  ++d l+h+++t++ ++++ld   +le   + ++++t 
   KKY13719.1  35 PPRFAGIILDAPWIALPPSSTPSTLKVVAGRLAAKILPRFQLPNKFDPKFVSRNPQVCEDWAKDDLCHDTVTLEGAAGMLDRHGELEslsKGKPEATt 132
                  678**************996588888999***************************************************987655511155666669 PP

  Hydrolase_4 192 ......................lPllllhGeaDkvvdpeas............relyerlgskdktlklypglyHellnEpd 239
                                        +P+l+lhG+ D v+++ as             + +  l+ +  ++k+y+g+yH+l+ +++
   KKY13719.1 133 faplysttvpsthsskfhslsqTPILILHGDGDLVTSYHASkalfaspsdtnsINPLPFLPPTARQFKTYEGGYHKLHADQE 214
                  99***************************************66666665544444444578889**************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1950.05
//
Query:       KKY13720.1  [L=979]
Description: putative ubiquitination network signaling [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.51    9.2  14.0        1.1    8.1  14.0    1.5  1  IFT57          Intra-flagellar transport protein 57
        6.7    4.1  27.9         11    3.4  27.9    1.2  1  DUF3584        Protein of unknown function (DUF3584)
        7.1    6.7  37.0       0.58   10.2   2.7    3.4  3  TPR_MLP1_2     TPR/MLP1/MLP2-like protein


Domain annotation for each model (and alignments):
>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  14.0   0.00019       1.1     193     319 ..     611     742 ..     579     761 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00019
       IFT57 193 skvdaaeWklEleRvlpqLkv...tikadak..dWrahleqmkkhkksieeslpetksqlkklhedisktlekiesrEkylnsqleellqeyreaqeel 286
                  k    + ++E+    ++Lk     +++++k  + ++++ q+++  +sie++l+ +     +  e+++k+ e+ e++ + ln+ +++l +  ++a+ e+
  KKY13720.1 611 HKAAVSKLEKEVDSLNSRLKTnsdDTRQRQKllQVERSMRQTEDATQSIEAALEGLAMVPGEELEEWTKMKEEFEAQNTLLNQANDTLNTARETAKSEV 709
                 44555677899999******97765566666779999999999999999999999999999999*********************************** PP

       IFT57 287 sevkekykqlsegvseltrelaeiseelekvkq 319
                 s+v+++yk+l ++ + l   +++++e+ +++ q
  KKY13720.1 710 SSVNDEYKTLAARRERLVARQTRLTEQHDRITQ 742
                 ****************************99976 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4  27.9    0.0019        11     292     502 ..     586     808 ..     578     815 .. 0.53

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.0019
     DUF3584 292 lkqqlrtledelkeaidelnqelsaakaklaakeselealeeqkkkyedadieklkadldqlpsirseleeleeeldaltekhqdvqekydrrkqkike 390
                 lk++++t e++l+ea+++l+    a ka++++ e+e++ l+++ k   d+   + +++l q++   ++ e++ ++++a +e    v  +  ++  k+ke
  KKY13720.1 586 LKNSIATAEAKLAEARNRLTRSRRAHKAAVSKLEKEVDSLNSRLKTNSDDT-RQ-RQKLLQVERSMRQTEDATQSIEAALEGLAMVPGEELEEWTKMKE 682
                 677788888888999999999999999999999999999888888766653.22.23333444444444444444444444444444444444444444 PP

     DUF3584 391 eleee...leklkerleaireekdrl..........kaaieealealesqlrkqleaqkeelneeekelesrlselk.lrldsatateEeleqieeade 475
                 e+e++   l++ ++ l+  re+++            +aa +e l a +  l +q++   ++  +   e e+r++e+    +++  ++   l q ++ ++
  KKY13720.1 683 EFEAQntlLNQANDTLNTARETAKSEvssvndeyktLAARRERLVARQTRLTEQHDRITQANVQGLNEKERRAAEQSaKDVEHSRVETSYLNQYAILNR 781
                 443330002222222223333332222222222223555556666666666655555544444444444444444330334555555666666777777 PP

     DUF3584 476 alekaqeelekaeaevealqaeeeqlr 502
                 +++  q++  +a +ev+a +++ +q+ 
  KKY13720.1 782 EIQSLQSRTSQAWQEVQAFETAAQQAL 808
                 777777777777777777766666654 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.7   9.7e-05      0.58      67     112 ..     584     629 ..     574     631 .. 0.72
   2 ?    9.4  14.1   0.00018       1.1      14     118 ..     632     736 ..     629     742 .. 0.96
   3 ?   -1.6   4.9      0.45   2.7e+03      57      77 ..     781     801 ..     739     812 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9.7e-05
  TPR_MLP1_2  67 nelkaeiaelkaeaesakaeleeseesweeqkeelekelselekri 112
                  +lk+ ia+++a++ +a++ l +s+ + +   ++leke+++l++r+
  KKY13720.1 584 TTLKNSIATAEAKLAEARNRLTRSRRAHKAAVSKLEKEVDSLNSRL 629
                 4567777777777777777777777777777777777777777776 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00018
  TPR_MLP1_2  14 keekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekri 112
                 +++++++++kl ++++ +++ ++ ++  +   e   +   e+++e ++++ee++  ++ ++++++ +++a+++ + + +s + + ++l  + + l +r 
  KKY13720.1 632 NSDDTRQRQKLLQVERSMRQTEDATQSIEAALEGLAMVPGEELEEWTKMKEEFEAQNTLLNQANDTLNTARETAKSEVSSVNDEYKTLAARRERLVARQ 730
                 5678899999***************************************************************************************** PP

  TPR_MLP1_2 113 edlneq 118
                 + l+eq
  KKY13720.1 731 TRLTEQ 736
                 999999 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.45
  TPR_MLP1_2  57 kelqalreelnelkaeiaelk 77 
                 +e+q+l ++ +++ +e++ ++
  KKY13720.1 781 REIQSLQSRTSQAWQEVQAFE 801
                 233333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (979 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1693  (0.094428); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.05u 0.31s 00:00:01.36 Elapsed: 00:00:00.51
# Mc/sec: 5768.94
//
Query:       KKY13721.1  [L=205]
Description: hypothetical protein UCRPC4_g06931 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-25   87.6   0.0    1.2e-24   87.1   0.0    1.1  1  4HBT_2    Thioesterase-like superfamily
  ------ inclusion threshold ------
      0.085   13.2   0.0       0.23   11.8   0.0    1.7  1  4HBT      Thioesterase superfamily


Domain annotation for each model (and alignments):
>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0   1.3e-28   1.2e-24       4     123 .]      32     158 ..      29     158 .. 0.88

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 1.3e-28
      4HBT_2   4 ndvDlnghlnnarylryleearvkfle........rtgl.ksrsiarrgiglilssahvryrrplkfpdrltvefrvid...idaktliiehrflsnad 90 
                 +     gh+nn++y+ry+e++r ++++        + ++ +  ++  ++iglil+s++v+y++p+++pd++ v+++++     +++++i+++ ++s+a 
  KKY13721.1  32 GK----GHVNNVQYVRYAETGRCNYIQnfathidpVHKTqWLALLSSKSIGLILKSIKVDYKFPMTWPDKISVYHKLRSmpsGSTSNIILDVLVMSEAR 126
                 55....9*******************9887777776666445666666*****************************7778889999*********777 PP

      4HBT_2  91 gkkaarveerivvmdygkrskkapvPpellkal 123
                 ++ aar++e++vv+dy+++ +k ++ p++lk++
  KKY13721.1 127 QRPAARCLEDVVVYDYQQA-RKTTLEPFMLKQF 158
                 777***************9.9********9986 PP

>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.6e-05      0.23       2      53 ..      34     101 ..      33     106 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.6e-05
                 SSB-HHHHHHHHHHHHHHHHHHTTST................TEEEEEEEEEEEESS-BBTTCEEEEE CS
        4HBT   2 GvvhgGvylallDeaagaalrslggr................gilvvvvelsidflrpvrlgdeltve 53 
                 G+v++ +y++++++++  ++   + +                 i++   ++++d++ p++++d++ v+
  KKY13721.1  34 GHVNNVQYVRYAETGRCNYIQNFATHidpvhktqwlallsskSIGLILKSIKVDYKFPMTWPDKISVY 101
                 9*********************9999999***********99999999999**********9998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       995  (0.0554967); expected 358.6 (0.02)
Passed bias filter:                      685  (0.0382063); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.33s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1265.60
//
Query:       KKY13722.1  [L=322]
Description: putative sam binding domain-containing protein containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-10   39.2   0.0    1.8e-09   38.2   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    1.1e-05   26.0   0.0    2.4e-05   24.9   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    0.00049   20.0   0.0     0.0034   17.3   0.0    2.1  2  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.018   14.4   0.0      0.034   13.5   0.0    1.4  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.035   13.9   0.0      0.049   13.5   0.0    1.3  1  Gag_p24          gag gene protein p24 (core nucleocapsid prot
       0.12   12.3   0.6       0.33   11.0   0.1    1.9  2  TraG-D_C         TraM recognition site of TraD and TraG


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   6.1e-13   1.8e-09       1      97 []      23     120 ..      23     120 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 6.1e-13
                      EEEET-TTSHHHHHHHCTS...T.SSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG.BSSSTTTEEEEEEEST.GGGSSHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl...g.kakvtgvDiseemleaareraeeeglnvefvqgdaed.lpfedgsfDlvvssga.lhhlsdedlekalke 88 
                      vL+l+cG+  ++ a+ + +   g k ++tg+Di++ + +  r+ +     +++fvq+d ++ lpf+d++fD++++  a ++      +++ l e
       KKY13722.1  23 VLELCCGSALWSSACNDYFkrsGsKVSFTGLDIAPLAPDLNRSGL-----DWTFVQHDTRKrLPFPDEEFDFIFIKDAsICTSASVFQADPLGE 111
                      9***************999876479**************988877.....9********666*************8886555333334567999 PP

                      HHHHEEEEE CS
  Methyltransf_25  89 iarvLkpgG 97 
                        r+L+ gG
       KKY13722.1 112 PLRLLRSGG 120
                      999999988 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   7.9e-09   2.4e-05       1      94 [.      24     122 ..      24     124 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 7.9e-09
                      EEET-TTSHHHHHHHHTT......SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC.TSS-TT-EEEEEEES.-CCC-..CCHHHHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg......arvvgvDlskemlklakekaseeglkvefvvadaek.lpfednsfDlvvsse.vlhhv..edpekalkei 84 
                      L++ cG+ + + a+ +++       + +g+D+++ + +l      ++gl  +fv+ d +k lpf+d+ fD+++++  ++++     +++ l e 
       KKY13722.1  24 LELCCGSALWSSACNDYFkrsgskVSFTGLDIAPLAPDLN-----RSGLDWTFVQHDTRKrLPFPDEEFDFIFIKDaSICTSasVFQADPLGEP 112
                      6788999998888885554445888899999999888444.....33333689*****9769*************944444455567888**** PP

                      HHHEEEEEEE CS
  Methyltransf_11  85 aRvLkpgGll 94 
                       R+L+ gG+l
       KKY13722.1 113 LRLLRSGGVL 122
                      ********98 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.1e-06    0.0034      20      87 ..      17      91 ..       4     160 .. 0.84
   2 ?    0.2   0.0       0.2   6.1e+02       7      31 ..     291     316 ..     284     319 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.1e-06
  Methyltransf_23 20 lraggrvLdiGcGtGillevlrengf......svtgvDlspeaveiaekakkaqkdqfdeq.eaaepqgkfdlIv 87
                     ++++ +vL++ cG+  +++ + ++++      s+tg D+ p a ++ ++   + ++q+d     ++p++ fd+I 
       KKY13722.1 17 DETPTKVLELCCGSALWSSACNDYFKrsgskvSFTGLDIAPLAPDLNRSGLDWTFVQHDTRkRLPFPDEEFDFIF 91
                     78999************9988555422333679***************888888888876624455999***995 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.2
  Methyltransf_23   7 eelsdklerll.pklraggrvLdiGc 31 
                      +++s  ++ ll +k  a+g+vL++G+
       KKY13722.1 291 RWWSNMTADLLqQKGTANGEVLEVGA 316
                      5566666677734469999*****95 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.1e-05     0.034      38     151 ..      10     124 ..       3     134 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.1e-05
                      HHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHH...EEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--T.TT-TTS-T-EEEEEE...ES CS
  Ubie_methyltran  38 fveklvavkrgakvlDvagGtgDlafklsdsvgekg...kvvvlDinenmLkvgekklkeegkinieflqana.eeLpfeddsfDvvtv...sf 124
                      f   +  + +++kvl++++G++ ++ +  d  +++g     ++lDi +   +     l+++g  +  f+q ++ ++Lpf d+ fD++ +   s 
       KKY13722.1  10 FCAPCFEDETPTKVLELCCGSALWSSACNDYFKRSGskvSFTGLDIAPLAPD-----LNRSG-LDWTFVQHDTrKRLPFPDEEFDFIFIkdaSI 97 
                      5566788999******************999999987334456666654333.....33444.46778887662679********998832222 PP

                      -GGG-S-HHHHHHHHHHHEEEEEEEEE CS
  Ubie_methyltran 125 GlrnvtDklkaLkeayrvlkpGGrlvv 151
                             +   L e  r l+ GG l v
       KKY13722.1  98 CTSASVFQADPLGEPLRLLRSGGVLEV 124
                      233333345567777777777777665 PP

>> Gag_p24  gag gene protein p24 (core nucleocapsid protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.6e-05     0.049      71     141 ..     143     215 ..     126     270 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-05
                 S----HHH.HHTSSS-HHHHHHHHHS..--HHHHHHHHHHHHHHHHHHHH--S.-CCC----TT--HHHHHHH CS
     Gag_p24  71 gpikissdmllgtgqllaeqsqlmqn..vevleqvrrlillalekiprsgsktesladirQGpkEpyqdfvaR 141
                 g+ + ++++   tg +++++  +  +   + l++++ ++++alek+    +++ s++     + +++qd+ +R
  KKY13722.1 143 GTSEDDLEQAQATGTYTISAATPFAQaqNQYLKDYNSWAQKALEKCRITTTPCASISLAFSAEADSFQDYGSR 215
                 55566777888888888777766444447899************************99999999999999765 PP

>> TraG-D_C  TraM recognition site of TraD and TraG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       0.6   1.8e+03      32      58 ..     163     188 ..     144     196 .. 0.57
   2 ?   11.0   0.1   0.00011      0.33      28      66 ..     260     305 ..     247     322 .] 0.78

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.6
    TraG-D_C  32 lvlilQsiaqleelYgkegaetilgnc 58 
                 + ++ Q  +q  + Y    a++ l+ c
  KKY13722.1 163 ATPFAQAQNQYLKDYN-SWAQKALEKC 188
                 3456666666666664.3445555555 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00011
    TraG-D_C  28 rgislvlilQsiaqlee......lYgkegaetilgncdvklflg.v 66 
                 r+  l++++Q+i+ le        Yg+++++ +++n++  l+ + +
  KKY13722.1 260 RRTALMTVVQTIESLEPmlieanGYGQDEWDRWWSNMTADLLQQkG 305
                 667899*********977777779*************988766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.52
# Mc/sec: 1874.54
//
Query:       KKY13723.1  [L=246]
Description: hypothetical protein UCRPC4_g06928 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00017   21.9   9.0    0.00039   20.7   9.0    1.6  1  AP3D1            AP-3 complex subunit delta-1
    0.00033   21.4   2.1    0.00033   21.4   2.1    2.2  1  ANAPC_CDC26      Anaphase-promoting complex APC subunit CDC26
     0.0025   18.0   7.2     0.0025   18.0   7.2    1.9  2  CENP-Q           CENP-Q, a CENPA-CAD centromere complex subun
     0.0054   15.7   8.9     0.0061   15.5   8.9    1.1  1  DUF812           Protein of unknown function (DUF812)
  ------ inclusion threshold ------
      0.011   14.9   1.1      0.016   14.4   1.1    1.2  1  FemAB_like       Peptidogalycan biosysnthesis/recognition
      0.065   12.9   0.1       0.15   11.7   0.1    1.6  1  Phage_tail_NK    Sf6-type phage tail needle knob or tip of so
      0.098   13.2  11.2      0.057   13.9   5.3    2.2  2  APG6_N           Apg6 coiled-coil region
        0.1   13.3  12.9      0.064   13.9   8.7    2.3  2  AATF-Che1        Apoptosis antagonizing transcription factor
       0.27   11.8   3.3       0.48   11.0   3.3    1.3  1  GPS              GPCR proteolysis site, GPS, motif
       0.43   10.8  12.1       0.16   12.1   9.0    1.8  2  ATG16            Autophagy protein 16 (ATG16)
        0.5    8.8   8.7       0.52    8.8   8.7    1.1  1  LCD1             DNA damage checkpoint protein
       0.52   10.4  14.6       0.14   12.3   9.3    2.3  2  DHR10            Designed helical repeat protein 10 domain
        5.4    7.9   7.6        2.5    8.9   2.1    2.5  2  PSK_trans_fac    Rv0623-like transcription factor
        6.3    6.8  20.4       0.58   10.1   0.6    3.4  3  Prefoldin_2      Prefoldin subunit
        6.4    7.9   6.7        2.4    9.2   2.0    2.3  2  DUF3774          Wound-induced protein
        6.8    7.2   7.0        1.3    9.5   1.0    2.6  3  DUF4140          N-terminal domain of unknown function (DUF41
        7.6    7.2   5.8         19    5.9   5.8    1.6  1  OAD_gamma        Oxaloacetate decarboxylase, gamma chain
        7.7    6.6  15.9       0.11   12.5   7.2    2.1  2  ADIP             Afadin- and alpha -actinin-Binding
        8.8    6.6   9.3        7.1    6.9   3.7    2.7  3  XhlA             Haemolysin XhlA


Domain annotation for each model (and alignments):
>> AP3D1  AP-3 complex subunit delta-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   9.0   4.2e-07   0.00039      51     118 ..     170     237 ..     140     242 .. 0.56

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 4.2e-07
       AP3D1  51 eldls.vplkvpglkrsdkyleeeesrkakkkakeekkkkkkkkkkkkkkkkkkkkkkeeesseseedd 118
                 e +++ ++ + + l+   ++lee+ + ++++  k ekk+ +kkkkkkkkkkkk+k  + +++sese+++
  KKY13723.1 170 EASIEaLQDQLRRLNTQIQFLEEDFEDHEERIFKLEKKS-RKKKKKKKKKKKKGKAAAMRTPSESEDEN 237
                 333432233566666677888885555555555544544.44444455555545555555555555554 PP

>> ANAPC_CDC26  Anaphase-promoting complex APC subunit CDC26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   2.1   3.5e-07   0.00033       2      50 ..     180     237 ..     180     244 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 3.5e-07
  ANAPC_CDC26   2 LRRkPTtItLtseDiaeyede.........rqrqkeqaaqqqrsqasastsqasdtda 50 
                  LRR  T+I+  +eD++++e++         ++++k++++++++ +a+++t ++s++++
   KKY13723.1 180 LRRLNTQIQFLEEDFEDHEERifklekksrKKKKKKKKKKKKGKAAAMRTPSESEDEN 237
                  8**********************88888877777777777777777777777776654 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.7   1.6e+03     128     140 ..      55      67 ..      26      81 .. 0.58
   2 !   18.0   7.2   2.7e-06    0.0025       8      98 ..     144     230 ..     137     245 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.7
      CENP-Q 128 ldeellpllqqLg 140
                 + +++l+ l+ L+
  KKY13723.1  55 KHKQTLQALERLE 67 
                 2233333333333 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 2.7e-06
      CENP-Q   8 rlpfPpatqsdggkekeldfeklldekaaleaqLspelhslelLeaeiekeeralerdyeaLreLeknakaearerkeklkkehvllqesd 98 
                 +lp P    s+ g +k    ++l+ ++ + ea+ ++++++l  L  +i+ +e+  e  +e + +Lek+ ++++++ k+k+kk    + +  
  KKY13723.1 144 TLPTPN---SHIGVDK-ATTDSLSTQQGRTEASIEALQDQLRRLNTQIQFLEEDFEDHEERIFKLEKKSRKKKKKKKKKKKKGKAAAMRTP 230
                 556666...3333333.33489999999***********************************************7776666444443222 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   8.9   6.5e-06    0.0061     255     383 ..      98     224 ..      13     237 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.5e-06
      DUF812 255 eqlrkaalkseeae.ssasksksdlaellsefseksetdslktkgsrfthaeklqftke.................ela......kkaeteeelkkkre 329
                 ++++++ +++e+ + ++ ++++ ++ +++++f+                         +                 + +      +++++    + + e
  KKY13723.1  98 SHVTEQNKEQEQLViFR-INRQPSVVKVFDNFKV------------------------DialtpslteqastlptpN-ShigvdkATTDSLSTQQGRTE 170
                 23333333333333122.2233344444444432........................1444444443333333320.033333357888899999999 PP

      DUF812 330 eeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevkl 383
                 +++e+lq+q+ +l+ +i+ lee+ ++ e++i ++e++ +++k+++++++k+ k 
  KKY13723.1 171 ASIEALQDQLRRLNTQIQFLEEDFEDHEERIFKLEKKSRKKKKKKKKKKKKGKA 224
                 ************************************999999999988887665 PP

>> FemAB_like  Peptidogalycan biosysnthesis/recognition
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.1   1.7e-05     0.016     146     198 ..     170     222 ..     140     240 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-05
  FemAB_like 146 eaelleeagllerldvqfhwknegyasfddfLaalssrkRknirkerrkvaeq 198
                 ea++ + ++ l+rl++q ++ +e+++++++ + +l+++ Rk+ +k ++k ++ 
  KKY13723.1 170 EASIEALQDQLRRLNTQIQFLEEDFEDHEERIFKLEKKSRKKKKKKKKKKKKG 222
                 34444557889*****************************9988887776443 PP

>> Phage_tail_NK  Sf6-type phage tail needle knob or tip of some Caudovirales
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00016      0.15       5      38 ..     180     213 ..     174     219 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
                    XXXXXXXXXXXXXXXXXXXXHHHHHHHHTS--EE CS
  Phage_tail_NK   5 issldtrvqslesqvsdhetridaleyattrkks 38 
                    +  l+t++q le +  dhe ri  le  + +kk 
     KKY13723.1 180 LRRLNTQIQFLEEDFEDHEERIFKLEKKSRKKKK 213
                    56799*********************99887775 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.3      0.17   1.6e+02      27      64 ..      36      68 ..      18      74 .. 0.43
   2 ?   13.9   5.3     6e-05     0.057      45     117 ..     162     235 ..      97     240 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.17
      APG6_N 27 aYeeflkklkkekkeeekqdeeleeleeeleklekeee 64
                +Y + lk+ k++ ++++   ++++++   l++le+ e+
  KKY13723.1 36 TYDRLLKERKED-PDPQ-LATKHKQT---LQALERLER 68
                233333333333.2222.33333333...333333333 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 6e-05
      APG6_N  45 qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreyne.lqlellelee 117
                   ++  ++e ++e+l+++ ++l ++++ le+  e+ e+ + +le+++++++++++++ ++ ++   ++ +e e+
  KKY13723.1 162 LSTQQGRTEASIEALQDQLRRLNTQIQFLEEDFEDHEERIFKLEKKSRKKKKKKKKKKKKGKAaAMRTPSESED 235
                 45667788999*****************************************9999999988834444455554 PP

>> AATF-Che1  Apoptosis antagonizing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1         1   9.6e+02      97     129 ..      42      74 ..      21      84 .. 0.73
   2 ?   13.9   8.7   6.8e-05     0.064       7     111 ..      99     224 ..      96     246 .] 0.58

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 1
   AATF-Che1  97 skrkrkkkkkeetsleelwkeleklekalkpfr 129
                 ++rk++++ + +t+ ++  ++le+le+a+ ++ 
  KKY13723.1  42 KERKEDPDPQLATKHKQTLQALERLERAMLSYD 74 
                 456666666666777777777777777777665 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 6.8e-05
   AATF-Che1   7 aVknQlklwDslLelRIklQkaltaan..................qLpqpetlkefles........seefeealeeaekalkklleslleLreelleq 79 
                 +V +Q+k  ++l   RI+ Q  ++++                   +Lp+p+++  + ++        +  +e+ +e+++++l+ l  ++  L e++ + 
  KKY13723.1  99 HVTEQNKEQEQLVIFRINRQPSVVKVFdnfkvdialtpslteqasTLPTPNSHIGVDKAttdslstqQGRTEASIEALQDQLRRLNTQIQFLEEDFEDH 197
                 788888888888888888888888887778787777776666666777555444443335333333366677777777777777777777777777555 PP

   AATF-Che1  80 ne.ikklaeskeeeekkkskrkrkkkkkeetsl 111
                 +e i kl++++++++kkk+k+k+k k       
  KKY13723.1 198 EErIFKLEKKSRKKKKKKKKKKKKGK------A 224
                 55776664444422222222222222......1 PP

>> GPS  GPCR proteolysis site, GPS, motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.3   0.00051      0.48      19      40 ..      80     101 ..      75     102 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00051
         GPS  19 eGCeltesdnknetvCsCnHLt 40 
                 +GC+  ++++++ ++CsC+H t
  KKY13723.1  80 KGCNKHSGRKDTAVSCSCSHVT 101
                 7**88899999*********98 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2       1.5   1.4e+03      44      50 ..      51      57 ..      17     112 .. 0.53
   2 ?   12.1   9.0   0.00017      0.16      37     126 ..     134     223 ..     101     238 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.5
       ATG16 44 aaasaks 50
                + a++++
  KKY13723.1 51 QLATKHK 57
                3332222 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00017
       ATG16  37 enaklekaaasaks..sksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerla 126
                  + +l ++a++ ++  s     ++k +++s s+++ +++a+i++l+++l +l+++ + l    +++++r+ +l+++ +k+++k k+++++ +
  KKY13723.1 134 LTPSLTEQASTLPTpnS--HIGVDKATTDSLSTQQGRTEASIEALQDQLRRLNTQIQFLEEDFEDHEERIFKLEKKSRKKKKKKKKKKKKGK 223
                 44555444444444321..22222222233333457999*******************************************9999988755 PP

>> LCD1  DNA damage checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   8.7   0.00055      0.52      16      89 ..     108     223 ..      40     240 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00055
                 H..............................................HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCHHTTTTTTHHHH-- CS
        LCD1  16 e..............................................leklknskkqlkesheeelekLkkevqkleDekkFlenElrslsetksqask 68 
                 e                                               +  ++s ++ + ++e  +e+L++++ +l ++ +Fle +  +  e    + k
  KKY13723.1 108 EqlvifrinrqpsvvkvfdnfkvdialtpslteqastlptpnshigvDKATTDSLSTQQGRTEASIEALQDQLRRLNTQIQFLEEDFEDHEER---IFK 203
                 356666666666666666666666666666666666666666666666777889999999*****************************9994...222 PP

                 ----TT---SSS--THHHHHH CS
        LCD1  69 ksaeedtdnsssvskKkRKie 89 
                  ++++  +++++ +kKk+K +
  KKY13723.1 204 LEKKS-RKKKKKKKKKKKKGK 223
                 22222.222222223333333 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2      0.69   6.5e+02       7      20 ..      56      69 ..      42      73 .. 0.62
   2 ?   12.3   9.3   0.00014      0.14      52     114 ..     159     221 ..     150     224 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.69
       DHR10  7 ekeelaelErkare 20
                 k++l++lEr  r+
  KKY13723.1 56 HKQTLQALERLERA 69
                34444444444443 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00014
       DHR10  52 leeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreqaeekreaakarlee 114
                 +++ + +  ++++ +e ++ +lr l+++++ l+   e +ee++ +l++++++k+++ k++ ++
  KKY13723.1 159 TDSLSTQQGRTEASIEALQDQLRRLNTQIQFLEEDFEDHEERIFKLEKKSRKKKKKKKKKKKK 221
                 5566667788999*******************************************9999876 PP

>> PSK_trans_fac  Rv0623-like transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.3      0.64     6e+02      27      49 ..      22      60 ..      17      80 .. 0.52
   2 ?    8.9   2.1    0.0026       2.5      21      67 ..     164     216 ..     156     240 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.64
                   XXXXXXXXXXXXXXXXX................XX--HH CS
  PSK_trans_fac 27 eAvrrAleerlerlrre................raepll 49
                   +Avr+ ++e+l ++ ++                +++++l
     KKY13723.1 22 QAVRDCIKEYLVHVTYDrllkerkedpdpqlatKHKQTL 60
                   677777777777766666544433344444222222222 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0026
                    XXXXXXXXXXXXXXXXXXXXXXX......XX--HHHHHHHHHHHHHTS--SS- CS
  PSK_trans_fac  21 tgeskteAvrrAleerlerlrre......raepllerllallrraaakaeked 67 
                    t +  teA  +Al+ +l+rl+ +      + e+  er+ +l ++ + k++k++
     KKY13723.1 164 TQQGRTEASIEALQDQLRRLNTQiqfleeDFEDHEERIFKLEKKSRKKKKKKK 216
                    67889****************87777666666666666666666666333333 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2     0.051        48      55      83 ..      40      68 ..      38      73 .. 0.91
   2 ?   10.1   0.6   0.00061      0.58      63      97 ..     158     192 ..     155     195 .. 0.88
   3 ?    1.0   9.8      0.43     4e+02      67     101 ..     190     224 ..     187     228 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.051
                 EEEE-HHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2 55 lvkqdkeevkeeLeerketlekeiktlek 83
                 l+k+ ke+  ++L +++++  + +++le+
   KKY13723.1 40 LLKERKEDPDPQLATKHKQTLQALERLER 68
                 78999**********************97 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00061
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  63 vkeeLeerketlekeiktlekqleklekeleelke 97 
                  +++ L +++ + e+ i++l++ql++l+++++ l+e
   KKY13723.1 158 TTDSLSTQQGRTEASIEALQDQLRRLNTQIQFLEE 192
                  678899999999*****************998887 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.43
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  Prefoldin_2  67 Leerketlekeiktlekqleklekeleelkeelqk 101
                  Lee+ e+ e++i +lek+ +k++k+ ++ k++ ++
   KKY13723.1 190 LEEDFEDHEERIFKLEKKSRKKKKKKKKKKKKGKA 224
                  899999*******************9999998665 PP

>> DUF3774  Wound-induced protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2       1.4   1.4e+03      18      57 ..      55     105 ..      44     111 .. 0.46
   2 ?    9.2   2.0    0.0025       2.4       7      57 ..     172     221 ..     167     236 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 1.4
     DUF3774  18 RwnyaLrslhqaaksnl.........aslsqakkald.....ssssss.keekrk 57 
                 + + +L+ l++  +++l         +     +k+++      s+s+s   e++k
  KKY13723.1  55 KHKQTLQALERLERAMLsydgttdlkG----CNKHSGrkdtaVSCSCShVTEQNK 105
                 556677777777777774444332220....222111222222333334222333 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0025
     DUF3774   7 aVealkDqGlcRwnyaLrslhqaaksnl.aslsqakkaldsssssskeekrk 57 
                   eal+Dq l R+n++++ l++  + +  ++++ +kk + ++++ +k++k+k
  KKY13723.1 172 SIEALQDQ-LRRLNTQIQFLEEDFEDHEeRIFKLEKK-SRKKKKKKKKKKKK 221
                 579*****.99*********88888888344555555.32222211223332 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1       1.3   1.2e+03      52      86 ..      35      68 ..      31      76 .. 0.49
   2 ?    9.5   1.0    0.0014       1.3      63      87 ..     168     193 ..     130     204 .. 0.57
   3 ?    0.7   0.3      0.78   7.4e+02      56      89 ..     187     223 ..     184     229 .. 0.51

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1.3
     DUF4140 52 vqvervpnreaeeeelkalraeleeledelaaled 86
                v+++r   +++e++   +l  + ++  ++l++le+
  KKY13723.1 35 VTYDRLLKERKEDP-DPQLATKHKQTLQALERLER 68
                55555545555554.33444444444444444433 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0014
     DUF4140  63 eeee.lkalraeleeledelaalede 87 
                  +e+ ++al+++l++l+++++ le++
  KKY13723.1 168 RTEAsIEALQDQLRRLNTQIQFLEED 193
                 11122455555555555555555554 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.78
     DUF4140  56 rvpnreaeee...elkalraeleeledelaaledela 89 
                  ++ +e +e+   ++ +l+++ ++ ++++++ +++ +
  KKY13723.1 187 IQFLEEDFEDheeRIFKLEKKSRKKKKKKKKKKKKGK 223
                 5555566665543355555555555555555444444 PP

>> OAD_gamma  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.8      0.02        19      30      61 ..     207     234 ..     199     240 .. 0.34

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.02
   OAD_gamma  30 kiikkkakkkkkkakaaaaaaaaaaaaaeldd 61 
                 k  kkk+kkkkkk+k +aaa +++    ++++
  KKY13723.1 207 KSRKKKKKKKKKKKKGKAAAMRTP----SESE 234
                 222233333333333333222222....2233 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   1.4       2.3   2.2e+03      73      73 ..      67      67 ..      31     112 .. 0.53
   2 ?   12.5   7.2   0.00012      0.11      51     116 ..     155     220 ..     152     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.3
        ADIP 73 q 73
                +
  KKY13723.1 67 E 67
                2 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00012
        ADIP  51 dleqreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklkneke 116
                 d+++  sl+++  + ea+ie lq + +rl tq + le   + ++++  +lekk ++ ++k k++k 
  KKY13723.1 155 DKATTDSLSTQQGRTEASIEALQDQLRRLNTQIQFLEEDFEDHEERIFKLEKKSRKKKKKKKKKKK 220
                 567778888999999999999999999999999999999999999999999998888888877764 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         9   8.5e+03      16      28 ..      56      68 ..      54      72 .. 0.53
   2 ?    3.0   0.1      0.13   1.2e+02      20      47 ..     159     186 ..     154     190 .. 0.81
   3 ?    6.9   3.7    0.0075       7.1       6      35 ..     187     216 ..     182     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 9
        XhlA 16 leervdkleekaa 28
                ++++++ le+ ++
  KKY13723.1 56 HKQTLQALERLER 68
                5555555555444 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.13
        XhlA  20 vdkleekaaeaeekiknleedlkklesn 47 
                  d l   + ++e++i+ l+++l +l  +
  KKY13723.1 159 TDSLSTQQGRTEASIEALQDQLRRLNTQ 186
                 467788899999*********9999765 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0075
        XhlA   6 lerietkldnleervdkleekaaeaeekik 35 
                 ++ +e++ +++eer+ kle+k+++ ++k k
  KKY13723.1 187 IQFLEEDFEDHEERIFKLEKKSRKKKKKKK 216
                 566899*****************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3084  (0.172012); expected 358.6 (0.02)
Passed bias filter:                     1031  (0.0575046); expected 358.6 (0.02)
Passed Vit filter:                       173  (0.00964917); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.69u 0.34s 00:00:01.03 Elapsed: 00:00:00.52
# Mc/sec: 1412.59
//
Query:       KKY13724.1  [L=417]
Description: putative spindle poison sensitivity protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 2575.90
//
Query:       KKY13725.1  [L=489]
Description: putative aldehyde dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-69  233.3   0.0    4.8e-69  233.0   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.0   0.0   2.7e-73   4.8e-69      73     461 ..      19     405 ..       8     406 .. 0.88

  Alignments for each domain:
  == domain 1  score: 233.0 bits;  conditional E-value: 2.7e-73
                 HHHHHHH---HHHHHH.HHHHHHHHHHHHHHHHHHHSE.EE...EEEC.TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTS CS
      Aldedh  73 eletletGkplaeara.eveeaidvlryyaelaekleg.ev...lpss.egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeet 165
                 e+  +++ kp  e  + ev ++ + + y  + ++  ++ e    +p + +  +  vr+ P+G +++I P+N+P+l ++  l+ a+ aGN+ v+K +e+ 
  KKY13725.1  19 EASKKDMAKPPFEVLQgEVGNVKNDILYNLKNLDSWAKdEKatgIPLNmSVLNGKVRKTPYGCCLIIGPFNYPMLCTILPLVGAISAGNSAVVKFSEKI 117
                 55666667766666666777766666666666555333133333666424555678888**************************************** PP

                 HHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGG CS
      Aldedh 166 plsalllaelfeeaglPkgvlnvvtgsgsevgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgn 264
                 p +a++l e++e+  l+++ + vv+g   e+ + l+e  + dk+ ftGs +vgr iakaaa +l++vtlElGG np+iv++ a++  a++++++g ++n
  KKY13725.1 118 PNIATVLREMVEA-ALDPDCFAVVQGAIPETQALLAE--KWDKIFFTGSPTVGRIIAKAAAPSLTPVTLELGGRNPAIVTKTAEIRLAARRLLWGKTLN 213
                 *********9988.6***********99999999988..79********************************************************** PP

                 GGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT-.-BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTT CS
      Aldedh 265 aGQvCiaasrllvqesiydefveklveaakkl.kvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpd 362
                 aGQvC + + +lv++++  +++ +l++a++++   g +  +++dv + +   ++ ++++++++ k    +++lGg    + + ++++++Ptv+   ++ 
  KKY13725.1 214 AGQVCLSQNYVLVEQGVLPKLITELKKAYAEFfPNGTETSSTSDV-AHMVDGSVPRIKSILDNSKG---EIILGG----QMDVTNNYIAPTVVVVRDTT 304
                 ****************************98886888888889999.666678899*****999887...79****....67899*************** PP

                 SHHHHS---SSEEEEEEESSHHHHHHHHHSSSEE.SEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTT.SEB--CGGGEES-BSHHHHHHHTEEE CS
      Aldedh 363 mriaqeEiFGPVlsvikfkdeeeaieiaNdteyG.LaagvftkdleraervaerleaGnvyiNdsttgaaea.lpfgGvkqSglGreggkegleeytev 459
                 ++++ eE+F+P+l++++f+++e a++ +N+ + + La + f+++ +++e++  +   G v+iNd++ + a   l fgG++ Sg+G+ +gk++++ +t+ 
  KKY13725.1 305 DSLIAEETFAPILTILPFDTLESALKTVNEIDRCpLALYPFSSSKTEIEKILVSTTSGGVTINDTILHGALGsLEFGGIGGSGTGSYHGKASFDCFTHR 403
                 ******************************87654999***************************88777777***********************987 PP

                 EE CS
      Aldedh 460 kt 461
                 ++
  KKY13725.1 404 RV 405
                 76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.36s 00:00:01.06 Elapsed: 00:00:00.59
# Mc/sec: 2497.78
//
Query:       KKY13727.1  [L=509]
Description: putative solid-state culture specific atp-grasp domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.5   0.2        1.3    9.1   0.0    2.5  2  DUF1707   Domain of unknown function (DUF1707)


Domain annotation for each model (and alignments):
>> DUF1707  Domain of unknown function (DUF1707)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1     0.047   8.4e+02       4      17 ..     269     282 ..     268     284 .. 0.89
   2 ?    9.1   0.0   7.4e-05       1.3       5      24 ..     440     459 ..     438     469 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.047
     DUF1707   4 sdadReravelLre 17 
                 s+a+Re+ ++ L++
  KKY13727.1 269 SEAEREDLMQKLDQ 282
                 79********9986 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 7.4e-05
     DUF1707   5 dadReravelLrealaeGrL 24 
                   dRe  + +L++ + eGr+
  KKY13727.1 440 KVDRETLMSRLSQQFKEGRI 459
                 67*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3221.55
//
Query:       KKY13728.1  [L=412]
Description: putative mfs transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-22   79.0  14.7      6e-22   78.0  14.7    1.5  1  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.13   12.3   0.1       0.13   12.3   0.1    2.2  3  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0  14.7   6.7e-26     6e-22       1     189 [.      68     275 ..      68     373 .. 0.79

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 6.7e-26
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 l+l+++ s+l+r+++g a  + l++dl+++  ++   lt++++ +a + +++ +l  r+ +  +l + + l++++++ + +++++  l+++r + Gl++
  KKY13728.1  68 LCLLYLASFLDRTNIGNAKIEGLNTDLNMTDGQYLATLTIFFVSYACFEPLTQVLLKRMRPSIFLPIIMGLWGICMTTMGLVHNWSGLMAARWFLGLTE 166
                 578999*************99**************************************7777************55555558877************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee.... 188
                 ++lfp+++++++ w++++e g   +++ ++++++  +g ll++++a   g      W ++f++ +++++l ++ + ++++ + p+++++ + +++    
  KKY13728.1 167 AGLFPGVNYYLSCWYKRSEFGIRAAIFFSAAAIAGSFGGLLAAAIAKMDGiggkpgWAWIFILEGLATILIGI-ASFWMVHDFPDEATFLSDDDRrrvi 264
                 *******************************************9997777889999****************9.4566655555555555555544555 PP

       MFS_1 189 ..........k 189
                           +
  KKY13728.1 265 rrlkedkqssA 275
                 54433333330 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.8      0.73   6.5e+03      48      56 ..     138     146 ..     101     170 .. 0.54
   2 ?   12.3   0.1   1.4e-05      0.13      34      96 ..     188     253 ..     182     272 .. 0.68
   3 ?   -3.0   0.0      0.81   7.3e+03      46      56 ..     356     366 ..     352     381 .. 0.48

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.73
  Phage_holin_3_6  48 llalllllv 56 
                      l ++ + ++
       KKY13728.1 138 LWGICMTTM 146
                      222222222 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 1.4e-05
  Phage_holin_3_6  34 gsgagllgaagvlallalllllval.alala.a.lwlaalivaavllvlagvlalvglkklkkakp 96 
                      +++a+++ aa++ + ++ ll+ + + + +++    w++ +i+ ++  +l g++ +++++ + ++++
       KKY13728.1 188 IRAAIFFSAAAIAGSFGGLLAAAIAkMDGIGgKpGWAWIFILEGLATILIGIASFWMVHDFPDEAT 253
                      44555555555555555444444445455544589*******999999999999999987776554 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.81
  Phage_holin_3_6  46 lallalllllv 56 
                      la+l++++l  
       KKY13728.1 356 LAYLTVFFLGG 366
                      33333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.50
# Mc/sec: 2470.40
//
Query:       KKY13729.1  [L=569]
Description: putative proline permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     2e-116  389.5  41.9   2.5e-116  389.1  41.9    1.0  1  AA_permease    Amino acid permease
      1e-28  100.4  45.2    1.2e-28  100.1  45.2    1.0  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  389.1  41.9  2.7e-120  2.5e-116       1     468 [.      69     522 ..      69     528 .. 0.98

  Alignments for each domain:
  == domain 1  score: 389.1 bits;  conditional E-value: 2.7e-120
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngp.ksggfytyasrflgpelGfviGlnylfswitvlaleltaa 97 
                  h+++ialgg iGtglfvg+g++l+++Gp+ +l  y+l+++ +++v+ ++ e+at+ p ++g  ++y  r++++++Gf+ G++y++   + ++ e+taa
   KKY13729.1  69 HAQMIALGGTIGTGLFVGSGSTLATGGPAFILTTYILMTFLVYFVVTAITEVATYLPvHGGTMSYYGYRYVSRSMGFALGYLYWYALGILVPYEVTAA 166
                  99*******************************************************7777789********************************** PP

  AA_permease  98 siliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakee 194
                  + +i +w    d++ + v+++++l+v++++n++ v++yge+ef++a  k+i +i+++i++++l +gg+p  g+ gf++++d+g+ +k +l++g    +
   KKY13729.1 167 GLVIDYW--PNDIN-IAVWITIMLIVIVALNFMPVRYYGETEFWFAGTKVILLIGLLILSVVLFFGGGPRGGRlGFHYWKDPGA-VKTYLVDG----D 256
                  *******..99***.*********************************************************************.99999999....9 PP

  AA_permease 195 egafknfisvfvivvfaft.GielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.aspfvifikesgvsvlap 290
                  +g++ +f   fv +vf ft   el+++++gE+++P++++Pka ++ ++r+++fYvl++l+ig+++p +d+ l+n+ a a +spfvi i ++g+s l++
   KKY13729.1 257 KGRLVAFWETFVLSVFPFTfAPELIVVTGGEMQNPRRNLPKAARRYFYRLIFFYVLGVLAIGVICPSDDKRLTNGGAGAkSSPFVIGIANAGISTLPS 354
                  999****************99*****************************************************999889****************** PP

  AA_permease 291 linaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsyl 388
                  ++navi+++a+ss+ns+ly++sR lysla +g aP+v+k ++++gvP++a+ +s+++s+la+l+ +++ +  +vf+++++++  +g+i w+++++ yl
   KKY13729.1 355 IVNAVIIISAWSSGNSFLYISSRSLYSLAISGSAPRVFKTCNRWGVPYVAVGVSSLFSALAYLNVGSSGS--TVFDWFVNLTNTSGFISWICCCIVYL 450
                  **********************************************************************..************************** PP

  AA_permease 389 rfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvkl 468
                  rfRka  +q+     ++f+++ +p+g+++++a++++++l+++++ +++     ++++a+sf+ ay+++++fli+++++ +
   KKY13729.1 451 RFRKACMAQNV---TVPFHSRIQPYGAWIAIAMFTLLCLLNGFTVFFK-----GQFSASSFLTAYIGIPIFLILYFVHRI 522
                  ***********...66********************************.....99*********************9876 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1  45.2   1.3e-32   1.2e-28       6     419 ..      70     510 ..      65     518 .. 0.74

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 1.3e-32
  AA_permease_2   6 afalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGi.yvytkaafgkkvaflsawfnwfayvpvlasilsv 98 
                    a ++++g +ig+g fv +   +a+ggpa+il+  i +  +++ v+ ++ E+++ lp  gG  + y+++  ++ ++f  ++++w+a  + +  + + 
     KKY13729.1  70 AQMIALGGTIGTGLFVGSgsTLATGGPAFILTTYILMTFLVYFVVTAITEVATYLPVHGGTmSYYGYRYVSRSMGFALGYLYWYALGILV-PYEVT 164
                    66899************9999999****99988888888889**********99777666515667888899999999999999988744.55555 PP

  AA_permease_2  99 aasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.........stetdtffpn 185
                    aa+  +  +  d++   w+t++     li+++++n + ++ ++   ++ + +k++l++ +li l ++++ ggg             +++ +t + +
     KKY13729.1 165 AAGLVIDYWPNDINIAVWITIM-----LIVIVALNFMPVRYYGETEFWFAGTKVILLIGLLI-LSVVLFFGGGPRGGrlgfhywkdPGAVKTYLVD 254
                    5555555564455444444444.....888999*********************65555555.555555444444444555555553333344445 PP

  AA_permease_2 186 gwpg....vllgllivlwsfd.Gfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddei..anlsn...lgsvaalffeavgg 269
                    g +g    ++ ++  +++ f+ + e +++   e+++  +++pka+   +   +++y+l  +a+  + p d    +n ++     s++ +  +++g 
     KKY13729.1 255 GDKGrlvaFWETFVLSVFPFTfAPELIVVTGGEMQNprRNLPKAARRYFYRLIFFYVLGVLAIGVICPSDDKrlTN-GGagaKSSPFVIGIANAGI 349
                    5555332225566555555542568888888899988679*****9999999999999877777766665542333.3323333468888889999 PP

  AA_permease_2 270 kvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas.saaynfllsvsslgliisyll 364
                    +++ +iv+++i++s++ ++n+++++ssr l++la  g  Pr+f+  n++g p++a+ ++ ++s + +l + ++s s+ +++ +++++ + +is++ 
     KKY13729.1 350 STLPSIVNAVIIISAWSSGNSFLYISSRSLYSLAISGSAPRVFKTCNRWGVPYVAVGVSSLFSALAYLNV-GSSgSTVFDWFVNLTNTSGFISWIC 444
                    9**************************************************************7777655.4556********************* PP

  AA_permease_2 365 liigalilrkkrphlkr..........pgkilvaiigalfllfllvalffppkgpatqssliyt.i 419
                    + i +l  rk    ++           +g+++  ++++l++l+  ++ ff ++ +a ++ ++y  i
     KKY13729.1 445 CCIVYLRFRKACMAQNVtvpfhsriqpYGAWIAIAMFTLLCLLNGFTVFFKGQFSASSFLTAYIgI 510
                    *99999888774333222344455775677877777777777778888887776666666666652 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3624.17
//
Query:       KKY13730.1  [L=423]
Description: hypothetical protein UCRPC4_g06924 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2956.42
//
Query:       KKY13731.1  [L=280]
Description: putative arylsulfatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-30  104.9   0.0    6.4e-30  104.6   0.0    1.1  1  Sulfatase  Sulfatase


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6   0.0   3.5e-34   6.4e-30     145     309 .]      12     208 ..       1     208 [. 0.84

  Alignments for each domain:
  == domain 1  score: 104.6 bits;  conditional E-value: 3.5e-34
                 CCTTTTCSHHHHHHHHHHHHH.HCCC.TSSEEEEEEE-TTSS.................STCTCGGHTCCGSTTTTCCCCCCH................ CS
   Sulfatase 145 rvppeggysddrlldealefl.larn.dkpfflylatlapHa.................ppeapdeyakkyatffddgseaar................ 208
                 ++++ g+ys+d + d+  +fl  a + dkpffl++a+ apH                  +++ + +++  +++f++++++ a+                
  KKY13731.1  12 PKIYHGQYSTDLIRDKSFGFLdDAVKaDKPFFLTIAPVAPHNnvqggrdtkpipaprhrGLFKDVKIPR-TKNFNPEQPSGASwvkelprlnarqvenm 109
                 23899*****************77777**************9888888887776665554455555543.35555555555447888888999999999 PP

                 .HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHCEEECSEEEGGGHHHHHHHH CS
   Sulfatase 209 .qlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekaprvseelvshiDlfptildl 306
                  + ++ +l+s+  vD+l+++++a+L   +ll nt+++ft D+g ++  +++++++gk+ + ye+++r+Pl+v++pg  +   s+ ++sh D+++t++d 
  KKY13731.1 110 dEWHRDRLRSLQAVDELVDKIVAKLIGYNLLSNTYIFFTTDNGFHI--AQHRFKPGKT-CGYEEDIRIPLIVRGPGVPKGVSSQIVTSHTDMAATFFDI 205
                 9*********************************************..99********.*********************77777888*********** PP

                 TTE CS
   Sulfatase 307 agi 309
                 +gi
  KKY13731.1 206 LGI 208
                 997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1860.97
//
Query:       KKY13732.1  [L=210]
Description: hypothetical protein UCRPC4_g06917 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      631  (0.0351944); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1535.23
//
Query:       KKY13733.1  [L=556]
Description: hypothetical protein UCRPC4_g06918 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.36s 00:00:01.00 Elapsed: 00:00:00.53
# Mc/sec: 3185.72
//
Query:       KKY13734.1  [L=348]
Description: hypothetical protein UCRPC4_g06919 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0069   16.3   0.1      0.012   15.6   0.1    1.4  1  APH       Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.058   13.9   0.4       0.12   12.8   0.4    1.5  1  EDS1_EP   Enhanced disease susceptibility 1 protein EP domain


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.3e-06     0.012     162     197 ..     153     194 ..      11     197 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.3e-06
                 S.......SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 162 g.......elptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                         ++p  ++  Dlh  N+ vd +d++v+ +iD+e a+
  KKY13734.1 153 HfinletrHGPFYFTLTDLHQSNIFVD-QDWHVKSIIDLEWAC 194
                 24555556789999*************.99*********9775 PP

>> EDS1_EP  Enhanced disease susceptibility 1 protein EP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   1.4e-05      0.12       1      73 [.     263     333 ..     263     334 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.4e-05
     EDS1_EP   1 wYkkkceeeeigYYdsfkekskeedikanvvrkkLanywdevveevekkelkeefelrkkwleagtnyrrlvE 73 
                 wY   +e + +g Y+ f++++ + ++++n + +++++yw++  ++v +++l + ++ r ++++ + + r l E
  KKY13734.1 263 WYFAALE-STKGLYNIFRRNI-RPKFSENFSYQEVSHYWRTNTDKVIQAKLDDRQSYRDNLIQRAMKGRELSE 333
                 6777666.689********99.788999***********************************9999888866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 2275.28
//
Query:       KKY13735.1  [L=254]
Description: putative protein kinase-like domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-16   59.6   0.0    1.5e-15   57.3   0.0    1.7  1  Pkinase      Protein kinase domain
    2.4e-11   43.4   0.0    6.5e-11   42.0   0.0    1.6  2  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
       0.14   11.5   0.0       0.21   10.9   0.0    1.2  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   2.4e-19   1.5e-15      34     199 ..      32     194 ..      16     217 .. 0.82

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 2.4e-19
                 CHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEE CS
     Pkinase  34 kekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLi 131
                 ke a++ + ++++ E +il++l  hp+iv++y++      + l+l  + +g+l+d++ ++ s+++    k+a+q +e+++y+Hskg+iH Dl p+ +L+
  KKY13735.1  32 KEFAQDIQ-RAFTVEPRILERLGdHPRIVKYYGTD----GRNLILREATHGNLEDFIIANPSIEMPLRLKFARQAIESVAYVHSKGVIHQDLRPAQFLV 125
                 44444433.68999********99*******9963....3445555555688*********************************************** PP

                 ETTTE....EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTT CS
     Pkinase 132 dekge....lKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsg 199
                 de++     l ++DFG +   + +        +s +  P +   +++ +  D++slG +++ +ltg  pf++
  KKY13735.1 126 DETKSgsldLLLSDFGGSLCDDLGL-DGGHLPDSGFFDPNLG--SKFPQMQDLFSLGSVCFMILTGAWPFRS 194
                 *77667899*******665444443.457888999****985..889999********************93 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   1.1e-14   6.5e-11      37     148 ..      31     141 ..      16     151 .. 0.85
   2 ?   -1.4   0.0      0.19   1.1e+03     181     209 ..     168     195 ..     165     241 .. 0.71

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 1.1e-14
                  STTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGG CS
  Pkinase_Tyr  37 keeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarN 133
                  ++e  ++ +++++ e +i+++l +hp+ivk++g     +   +++  +++G+L++f+ ++  +++++   l+fa q  + ++y++sk ++H+dl+   
   KKY13735.1  31 QKEFAQDIQRAFTVEPRILERLgDHPRIVKYYGTDG--R--NLILREATHGNLEDFIIAN--PSIEMPLRLKFARQAIESVAYVHSKGVIHQDLRPAQ 122
                  44555666999**********************644..3..46777789**********9..************************************ PP

                  EEEEE....TTEEEE-STT CS
  Pkinase_Tyr 134 vLlse....nkvvkisDfG 148
                   L++e    +    +sDfG
   KKY13735.1 123 FLVDEtksgSLDLLLSDFG 141
                  ****944433456677877 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.19
                  EEEHHHHHHHHHHHHHHHHTTSSGTTTTS CS
  Pkinase_Tyr 181 kftsksDvWsfGvllwEiftlgespypgl 209
                  kf +  D +s G +++ i+t g+ p+++ 
   KKY13735.1 168 KFPQMQDLFSLGSVCFMILT-GAWPFRSP 195
                  56777899999999999998.88886654 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.5e-05      0.21     129     166 ..     103     140 ..      64     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.5e-05
         Kdo 129 rliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                   +a  h+ gv H+dl +  +l+++++++ + + l D+
  KKY13735.1 103 ESVAYVHSKGVIHQDLRPAQFLVDETKSGSLDLLLSDF 140
                 567889*********************99999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1634.20
//
Query:       KKY13746.1  [L=311]
Description: putative miz zinc finger domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-11   43.7   1.0    2.9e-11   42.9   1.0    1.4  1  zf-MIZ    MIZ/SP-RING zinc finger
  ------ inclusion threshold ------
      0.068   13.0   1.3       0.14   12.0   1.3    1.6  1  zf-Nse    Zinc-finger of the MIZ type in Nse subunit


Domain annotation for each model (and alignments):
>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   1.0   3.3e-15   2.9e-11       6      48 ..     176     226 ..     171     228 .. 0.90

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 3.3e-15
                 TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS--........-B-TTT- CS
      zf-MIZ   6 plslsrikiPvrgekCkHlqCfdlesylelnertet........WnCPvCs 48 
                 p+s +   iPvr+++C H  Cfdle +l + + + +        W+CP+C 
  KKY13746.1 176 PFSSRIFDIPVRSVHCLHKECFDLEIFLASRKSRTQgaptnpdeWKCPICR 226
                 88888899**********************9988888999**********7 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.3   1.6e-05      0.14      10      56 ..     171     227 ..     160     228 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.6e-05
                 XXSB-TTTSSB-SSEEEESSS--..EEEHHHHHHHC...........TTTS-EE-SCCC- CS
      zf-Nse  10 islkCPltlqpfeePvtskkCpH..vFEreaIleli...........krkktvkCPvagC 56 
                 +++++P + + f  Pv+s +C H   F+ e     +            + ++ kCP+  C
  KKY13746.1 171 VEVTDPFSSRIFDIPVRSVHCLHkeCFDLEIF---LasrksrtqgapTNPDEWKCPICRC 227
                 7899*******************333665544...4555999999999999999999666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2055.34
//
Query:       KKY13747.1  [L=445]
Description: hypothetical protein UCRPC4_g06911 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 2790.58
//
Query:       KKY13748.1  [L=458]
Description: putative c2h2 finger domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-07   30.5   2.7     0.0098   16.7   0.1    3.0  3  zf-C2H2_4  C2H2-type zinc finger
    0.00039   20.7   4.9     0.0054   17.1   0.1    2.9  3  zf-C2H2    Zinc finger, C2H2 type
  ------ inclusion threshold ------
       0.14   12.2   1.1       0.34   11.0   0.3    2.1  2  zf-C2H2_6  C2H2-type zinc finger
       0.21   12.4   1.2       0.32   11.9   0.1    1.9  2  Ima1_N     Ima1 N-terminal domain


Domain annotation for each model (and alignments):
>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   3.5e-05      0.16       2      24 .]      19      41 ..      18      41 .. 0.95
   2 !   16.7   0.1   2.2e-06    0.0098       1      24 []      42      65 ..      42      65 .. 0.98
   3 ?   -1.5   0.0       1.5   6.5e+03      10      23 ..     140     153 ..     138     154 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.5e-05
   zf-C2H2_4  2 kCpiCgksFsskkaLlrHlkthH 24
                +C +C + F + k L +H k+ H
  KKY13748.1 19 WCYYCERDFDDLKILINHQKAKH 41
                6********************99 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.2e-06
   zf-C2H2_4  1 fkCpiCgksFsskkaLlrHlkthH 24
                fkC+ Cg++ ++  +L+ H+ ++H
  KKY13748.1 42 FKCERCGRRLNTAGGLNVHMSQVH 65
                8********************999 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.5
   zf-C2H2_4  10 FsskkaLlrHlkth 23 
                 F s+++L++ l+ h
  KKY13748.1 140 FESPSDLKKRLAEH 153
                 9999**99998888 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.3    0.0098        44       3      23 .]      20      41 ..      20      41 .. 0.94
   2 !   17.1   0.1   1.2e-06    0.0054       1      23 []      42      65 ..      42      65 .. 0.97
   3 ?   -1.8   0.0       1.2   5.6e+03       9      18 ..     139     148 ..     137     148 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0098
                ETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2  3 CpdCgksFkrksnLkrHirt.H 23
                C +C + F +   L +H++  H
  KKY13748.1 20 CYYCERDFDDLKILINHQKAkH 41
                99***************99877 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 1.2e-06
                EEETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2  1 ykCpdCgksFkrksnLkrHirt.H 23
                +kC+ Cg++ ++   L++H++  H
  KKY13748.1 42 FKCERCGRRLNTAGGLNVHMSQvH 65
                8*******************9988 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.2
                 EESSHHHHHH CS
     zf-C2H2   9 sFkrksnLkr 18 
                 +F ++s+Lk+
  KKY13748.1 139 KFESPSDLKK 148
                 799*****96 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.61   2.7e+03       4      23 ..      20      39 ..      20      41 .. 0.77
   2 ?   11.0   0.3   7.6e-05      0.34       1      26 [.      41      66 ..      41      67 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.61
   zf-C2H2_6  4 CsvCsksFpslqaLggHkks 23
                C +C + F  l+ L+ H k 
  KKY13748.1 20 CYYCERDFDDLKILINHQKA 39
                88999999888888888766 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 7.6e-05
   zf-C2H2_6  1 vheCsvCsksFpslqaLggHkksHrk 26
                +++C  C++++++   L+ H+++ +k
  KKY13748.1 41 HFKCERCGRRLNTAGGLNVHMSQVHK 66
                79*********************777 PP

>> Ima1_N  Ima1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1     7e-05      0.32       3      50 ..      20      70 ..      19     122 .. 0.80
   2 ?   -2.3   0.1       1.6   7.3e+03      55      68 ..     417     422 ..     389     448 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7e-05
      Ima1_N  3 CffCnkksk.....vkyeeknsfeCpsCeayNgfdedGdindeipeqeeesln 50
                C++C+++       ++++++++f+C++C    +++  G +n ++ ++++e+l+
  KKY13748.1 20 CYYCERDFDdlkilINHQKAKHFKCERCGR--RLNTAGGLNVHMSQVHKEALS 70
                ****997652222256666777******86..79999***9999999999887 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.6
      Ima1_N  55 kaaaskskskseea 68 
                 ka++        ++
  KKY13748.1 417 KASK--------KD 422
                 1111........11 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       921  (0.0513693); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.52
# Mc/sec: 2652.89
//
Query:       KKY13749.1  [L=478]
Description: putative amino acid transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-41  140.9  37.8    5.3e-41  140.7  37.8    1.0  1  Aa_trans  Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.7  37.8     3e-45   5.3e-41       2     406 ..      64     457 ..      63     459 .. 0.92

  Alignments for each domain:
  == domain 1  score: 140.7 bits;  conditional E-value: 3e-45
    Aa_trans   2 tssalsavlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktla.....sgkrnksYgdlg..yrllGpkgkliidlailvq 93 
                 t  +++a + +i ++++ G+L+LP  +++ G+i+G+il++  +++  y+ +++ + +  ++      + +   ++ lg    +++   k i+++a++++
  KKY13749.1  64 TLEWWQAGMIMIAETISLGILSLPSVLASVGMIAGIILIAGLGVIATYSGYVIGQFKIAYPwvhsmADAGEILFQPLGprAAIIA---KEIFGAAQTTF 159
                 678******************************************************9999766666666666666654444444...579******** PP

    Aa_trans  94 lfGvgvsyliligdllpaifesffdtlllsnvyfilisaliiipLslipnlskLsylSllalvsslyyivilvlvvaelvklelkgvseetvkkasklk 192
                 l++ + s++++ ++ l+++++s      ++  ++ ++  ++++++ + + l+k+s+lS++++ s+l    ++ +  ++ +++++ g s+  +++ + ++
  KKY13749.1 160 LIFSMASHILTWTICLNTLTDS-----STCTIVWGIVGLVVFFIFDIPRTLKKVSWLSIVSFASILS---AVLITMVDVGITKPIGNSSPSATTHTAFH 250
                 *********************9.....6899**********************************75...67777777778888888888888888888 PP

    Aa_trans 193 glflaigiivFAftghavlleiqnelkdpskfkkmtkvlllsiilatvlyilvGlvGYltFGnevkgnillnlpkssilivivnlllvlhlilsfplql 291
                 + fl++++ivFA++gh  +++++ e k+p++f+   k+l l  i+ t+lyi+v+ v+Y   G +v + +l + + s++++ i+  + +  +i++  ++ 
  KKY13749.1 251 SAFLSVSNIVFAYAGHVSFFSFISEFKNPAEFP---KALALLQIADTTLYIVVAIVVYRYVGADVDSPALGSAS-SAVMKKIAYGVAIPTIIIAGVIYG 345
                 *********************************...9************************************7.447********************* PP

    Aa_trans 292 hplrqvvenllikkeavagasekeapkskllrlvirlllvvityliAlsvpslakvlslvGatsstplsfilPalfhlkliktekksleklvkkkildl 390
                 h++ +++   +++    ++   k++ + + +++ i l l vi+++iA s+p+++ +l+l+++++++ +++ + + ++  + +   +s  + ++ +i+++
  KKY13749.1 346 HVASKYIYVRIFRG---TKHMSKRTFLATGSWIAIVLTLWVIAWIIAESIPNFNNLLALISSLFASWFTYGITGPLWWNINSGRMWSSPRKIFLSIVNI 441
                 ************97...999999999999****************************************************999999999999999999 PP

    Aa_trans 391 icivlglllvfyglav 406
                  ++ lg+ ++ +gl++
  KKY13749.1 442 GMFLLGATICGIGLYA 457
                 9999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3033.98
//
Query:       KKY13750.1  [L=756]
Description: putative spore-specific catalase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   6.5e-170  565.3   0.1   9.2e-170  564.8   0.1    1.2  1  Catalase      Catalase
    1.1e-20   73.5   0.1    2.3e-20   72.6   0.1    1.6  1  Catalase-rel  Catalase-related immune-responsive
    2.3e-10   40.3   0.0    4.7e-10   39.3   0.0    1.5  1  Catalase_C    C-terminal domain found in long catalases
    7.2e-09   35.7   0.0    1.7e-08   34.4   0.0    1.7  2  DJ-1_PfpI     DJ-1/PfpI family


Domain annotation for each model (and alignments):
>> Catalase  Catalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  564.8   0.1    2e-173  9.2e-170       1     382 [.      60     447 ..      60     448 .. 0.98

  Alignments for each domain:
  == domain 1  score: 564.8 bits;  conditional E-value: 2e-173
                 B-TTS-B-S-SSS-EEESTT...S-BBTT-HHHHHHHHHHHT------SS--SEEEEEEEEEESS--TTT---GGGSSTT-EEEEEEEEE-SS--TT-- CS
    Catalase   1 ttseGapvsdnqnsltager...GplllqdvhlieklahfdreripeRvvhAkGagahgeFevtkdisdltkakllskvgkktpvlvRfStvagekgsa 96 
                 tt+ G+ vsd ++ l++ ++   Gp  l+d++ +e++++fd+eripeRvvhA+Gagahg+F++ ++++d+t+a +l++++++tp+++RfStv+g++gsa
  KKY13750.1  60 TTDYGIGVSDLDHWLRITNNdriGPNALEDQIARERIHRFDHERIPERVVHARGAGAHGHFKLFESAEDVTSAGVLTDTSRETPIFIRFSTVQGSRGSA 158
                 78899999999999999988889**************************************************************************** PP

                 SSSSS--EEEEEEEETTEEEEEEEESSSS-S-S-GGGHHHHHHHHSB-TTT-SB....-HHH..HHHHHHT-GGGHHHHHHHHSGGGSBS-GGGS-EE- CS
    Catalase  97 dtaRdvrGfavkfyTeeGnwDlvgnntpvFfirDpikfpdlihsqkrepqtnlk....daam..fwdflslnpeslhqvlilfsdrgipksyrhmngyg 189
                 dt+RdvrGfavkfyTeeGnwD+vgn++pvFfi+D+ikfpd++h++k+ep+++++    +  +  fwdf+ l+pe++h+ ++++sdrgip+syr+m+g+g
  KKY13750.1 159 DTVRDVRGFAVKFYTEEGNWDIVGNDIPVFFIQDSIKFPDMVHAVKPEPHNEVPqaqtA--HnnFWDFVYLHPEATHMYFWAMSDRGIPRSYRMMQGFG 255
                 *****************************************************976433..356*********************************** PP

                 -S-EEEE-TT--EEEEEEEEEETT---B--HHHHHHHHHH-TTHHHHHHHHHHHTT---EEEEEEEEEEHHHHTTTHHHHT-TT----TTTS--EEEEE CS
    Catalase 190 vhtfklvnkegevvyvkfhfktkqgvknltaeeaeklagedpdyatrdLyeaiekgeypewelyvqvmteeeaeklrfnilDlTkvwpekevplrevGk 288
                 v+t++l+n++ge+++vkfhf ++ gv+++t++ea klag+dpd++++dL eai +g+ p+w++ +q+++e+++++++f+ilD+Tkvwpe+ vp+r +G+
  KKY13750.1 256 VNTYSLINAKGERHFVKFHFVPELGVHSFTWDEALKLAGQDPDFHRKDLEEAITNGAPPKWKFGIQTIHESSQDDFEFDILDATKVWPEELVPIRYIGE 354
                 *************************************************************************************************** PP

                 EEEEE--S-HHHHTTT----TT---TTEE--S-HHHHHHHHHHHHHHHHHT-TTGGGSGGG---..---S----TT-.....S-S---SS-S-T CS
    Catalase 289 ltLnrnpenyFaevEqvafspsnlvpGiepseDklLqgRlfsYadtqryRlGvnyqqlpvNrpkakvanyqrdGamrveankgkepnYepnsle 382
                 ++Lnr +++yF e+Eqvaf++s++vpGi++s+D+lLqgR fsY dtq++RlG+n+++lp+Nrp ++v+n++rdGamr++++kgk +nY+pn+++
  KKY13750.1 355 IELNRCVDEYFPETEQVAFCTSHIVPGIDFSDDPLLQGRNFSYFDTQISRLGINWEELPINRPVCPVMNFNRDGAMRHRITKGK-VNYWPNRFD 447
                 ******************************************************************************999998.******986 PP

>> Catalase-rel  Catalase-related immune-responsive
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.1   5.1e-24   2.3e-20       2      65 .]     476     539 ..     475     539 .. 0.97

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 5.1e-24
                   HGG--SSHHHHHHHHHS-HHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH-HHHHHHHHHHH CS
  Catalase-rel   2 edfddhfsQagllyrsmseeekerlvnniafelskvedeeiqerqlehfakvDpdlgqrVaeal 65 
                   ++f++hf+Qa+l+++sms+ ek++++++++fel++++++ ++er  + ++++D +l+q+Va+++
    KKY13750.1 476 KKFNEHFNQAQLFWNSMSPIEKKHIIEAFSFELDHCDEPIVYERISARLTEIDLELAQAVAKNV 539
                   789**********************************************************985 PP

>> Catalase_C  C-terminal domain found in long catalases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   1.1e-13   4.7e-10       2     139 ..     573     717 ..     572     727 .. 0.79

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 1.1e-13
  Catalase_C   2 glkVgiLasndseaslaqakalaaalaaegvdvtvvaeklg...saeg..v..nrTYstadaveFDaivvadgaeslfsakataasslfpagrplqlll 93 
                 +++++iL+++    +    +a++aa+aa+ + +  ++++ +   s++g  v  ++ +  +++++FDa+++ +g++++          l ++g p   ++
  KKY13750.1 573 SRRIAILIGP--GFDAISYNAIKAAIAAQSALPFTIGPHRQpvkSSQGesVqpDHHFNGMRSTMFDAVYIPAGEHAAE---------LAKQGLPRFWVR 660
                 7899****96..5689999******************9998777444455844588*****************65555.........7889******** PP

  Catalase_C  94 dayrhgKpigalGsgaealk...............aagisa...eepGVyvadsasealvekvk 139
                 +a+ h K+iga+G g ++++               +        e  GV++ad+a+e   +++k
  KKY13750.1 661 EAFGHLKAIGAVGGGIKLVEaalseldsyqlasssN----PgvvEWYGVVTADKADE---SSFK 717
                 ***************999998888888776543222....13446778888877776...4444 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.2   5.3e+03     109     140 ..      19      50 ..       5      57 .. 0.70
   2 !   34.4   0.0   3.8e-12   1.7e-08       1     118 [.     574     691 ..     574     747 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.2
                 HTTTTTTSEE--SGGGHHHHHHTTSEE-SSSE CS
   DJ-1_PfpI 109 aagvlkgrrvTsypavkdklekagakyvdkrv 140
                 + +  +++ +T+yp+  d  ++a ak + k  
  KKY13750.1  19 DSDKADSKGATAYPSAIDSSTNAKAKDLSKDT 50 
                 56667889999999999888777776665544 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 3.8e-12
                 EEEEEEEETTBEHHHHHHHHHHHHHTTEEEEEEESSTSEEEETTSEEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT-EEEE CS
   DJ-1_PfpI   1 kkvlvlladgvedvElivpvdvlkragikvdvvsvdkeevkgsrGlkvtvdaslddvkaaeyDalvlpGGragperlrenekvvelvkefaekgklvaa 99 
                 +++++l++ g++ + + +  +++++++    ++++ +++vk+s+G++v +d+ ++ +++  +Da+ +p G+  + +l+++   + +v+e++   k ++a
  KKY13750.1 574 RRIAILIGPGFDAISYNAIKAAIAAQSALPFTIGPHRQPVKSSQGESVQPDHHFNGMRSTMFDAVYIPAGEH-AAELAKQGLPRFWVREAFGHLKAIGA 671
                 59********************************************************************99.9999999999**************** PP

                 ETTTH.HHHHHTTTTTTSEE CS
   DJ-1_PfpI 100 ICagp.qlLaaagvlkgrrv 118
                 ++ g  ++ aa + l++ ++
  KKY13750.1 672 VGGGIkLVEAALSELDSYQL 691
                 ****5333333344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (756 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 4836.94
//
Query:       KKY13751.1  [L=342]
Description: putative nad-binding rossmann fold oxidoreductase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-17   63.9   0.4    4.8e-17   62.9   0.4    1.5  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
    2.3e-07   30.8   0.0      4e-07   30.0   0.0    1.4  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.4   5.4e-21   4.8e-17      11     108 ..       1      99 [.       1     107 [. 0.92

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 5.4e-21
                   HHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH.HHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-SSHHHHHHHH CS
  GFO_IDH_MocA  11 igskhlrplnesqrleevvalldpdaeraeav.aesfgveaysdleelladpeidavivatpngtheelakaaleagkhvllEKPlattveeakelv 106
                   +g++h+  + + +++++v a+ +pda + + +  +  gv++ysd+ee+l+++  +av++a+ ++ h+e a++a+++g hvl EKPl+t+ve  + +v
    KKY13751.1   1 MGKRHALHFYQYTPRANVLAVSSPDADERKWAvENLEGVKVYSDYEEMLSHEGLQAVVIASVTSVHAEQAIKAIQKGLHVLSEKPLSTNVEISQSVV 97 
                   6899*99******************987776637778999****************************************************99999 PP

                   HH CS
  GFO_IDH_MocA 107 el 108
                   ++
    KKY13751.1  98 DA 99 
                   87 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   4.5e-11     4e-07      35      64 ..     157     188 ..     130     227 .. 0.73

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 4.5e-11
                     SH..HCSTSHHHHTCHHHHHHHHHHHTSEEEE CS
  GFO_IDH_MocA_C  35 rk..kksgGvlgdlgiHdiDllqwLfGqppsv 64 
                      +  ++sgG+++d++iHdiDl+ w+fG+++ v
      KKY13751.1 157 VAyaQFSGGIFVDCSIHDIDLALWFFGEDSKV 188
                     33448***********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2255.36
//
Query:       KKY13752.1  [L=317]
Description: putative inositol oxygenase 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.2e-128  425.4   3.3   9.1e-128  425.0   3.3    1.1  1  MIOX      Myo-inositol oxygenase
     0.0018   18.3   0.4     0.0029   17.6   0.4    1.3  1  DUF1796   Putative papain-like cysteine peptidase (DUF1796)
  ------ inclusion threshold ------
      0.034   14.4   0.2        1.3    9.2   0.0    2.8  3  HD        HD domain


Domain annotation for each model (and alignments):
>> MIOX  Myo-inositol oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  425.0   3.3  1.5e-131  9.1e-128       1     249 []      69     317 .]      69     317 .] 0.99

  Alignments for each domain:
  == domain 1  score: 425.0 bits;  conditional E-value: 1.5e-131
        MIOX   1 kdrvkefykeqhtkqtvdfvkkkrkefkkkkrakmtiwealellnelvdesdPdvdlsqiehllqtaeairkdypdkdWlqltglihdlGkvlllfkae 99 
                 +drvk+fy+eqhtkqtv+f+ k+r++fk ++ra+mtiwea+e ln+l+desdPd++lsqiehllq+aeair+d ++++W+qltglihdlGk+l +f+++
  KKY13752.1  69 CDRVKNFYQEQHTKQTVAFNLKARHDFKMNTRAEMTIWEAMERLNTLIDESDPDTSLSQIEHLLQSAEAIRRD-GKPRWMQLTGLIHDLGKLLNFFGSQ 166
                 68***********************************************************************.************************* PP

        MIOX 100 pqWavvGdtfpvGckfsesivy.kesfkenpdlkdekyntklGiykencGldnvllswghdeylykvlkenkstlpeealamiryhsfypwhkegaykh 197
                 +qW+vvGdtfpvGc+f+++i+y k+sf+enpd++d++y+t++Giy+++cGldnv+lswghdeyly+v+k ++stlp+ealamiryhsfypwh++gay+ 
  KKY13752.1 167 GQWDVVGDTFPVGCAFDDRIIYgKKSFQENPDFNDPVYSTEYGIYSKGCGLDNVMLSWGHDEYLYHVVK-DQSTLPDEALAMIRYHSFYPWHQQGAYRD 264
                 *********************************************************************.99*************************** PP

        MIOX 198 lmnekdeellkavkafnkydlyskseekpdveelkPyyqelidkylpe.klkw 249
                 lm+e+d+++l+avkafn+ydlysks++kp+ eelkPyy+elid+y+p+ ++kw
  KKY13752.1 265 LMDEHDTKMLEAVKAFNPYDLYSKSDDKPKAEELKPYYMELIDEYFPNkVIKW 317
                 ***********************************************966777 PP

>> DUF1796  Putative papain-like cysteine peptidase (DUF1796)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.4   4.8e-07    0.0029      37     121 ..      28     119 ..       7     143 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.8e-07
     DUF1796  37 glveliangFss.fldpeqlesassssdaavtearsrfipdpvkvwllfrnqhal......lfthhDlanneevkakfrrrirrfeallssp 121
                  +v++++++F++ +l+ + +  +s+ ++ + +++++++   + +v  ++++qh+       l + hD++ n++ +    + ++r+++l++++
  KKY13752.1  28 EAVNILRDQFKKeGLQEKGIYEQSEFDKGKDKTQFRQYEDACDRVKNFYQEQHTKqtvafnLKARHDFKMNTRAEMTIWEAMERLNTLIDES 119
                 57899*****8527778888777777888888999999***************996665556667777888888888888888888888776 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.32   1.9e+03      56      88 ..      22      50 ..      10     102 .. 0.70
   2 ?    9.2   0.0   0.00022       1.3      17      42 ..     136     161 ..     124     174 .. 0.77
   3 ?    1.6   0.0     0.052   3.1e+02      58      93 ..     225     256 ..     217     300 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.32
                CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
          HD 56 flaHekvgaeilrevekrlgldledvaklireh 88
                +la  ++++ ilr+ +k +gl      k i e 
  KKY13752.1 22 ELADDIEAVNILRDQFKKEGL----QEKGIYEQ 50
                455667777788888887776....44444444 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00022
                 HHHHHHHHHHHHHHHHHHTTTTHHHH CS
          HD  17 edlgeeedrellllaaLlHDiGkgpf 42 
                 e + ++ ++ + +l +L+HD+Gk ++
  KKY13752.1 136 EAIRRDGKPRWMQLTGLIHDLGKLLN 161
                 33333578999************885 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.052
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH CS
          HD  58 aHekvgaeilrevekrlgldledvaklirehheswe 93 
                 +H ++ + ++++   ++    ++++++ir+h++   
  KKY13752.1 225 GHDEYLYHVVKDQSTLP----DEALAMIRYHSFYPW 256
                 58999999999999999....56999***9988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       886  (0.0494171); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.51
# Mc/sec: 1887.67
//
Query:       KKY13889.1  [L=233]
Description: hypothetical protein UCRPC4_g06905 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 1443.10
//
Query:       KKY13890.1  [L=367]
Description: hypothetical protein UCRPC4_g06906 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2910.82
//
Query:       KKY13891.1  [L=254]
Description: putative protein kinase-like domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-18   66.3   0.0    4.5e-18   65.5   0.0    1.3  1  Pkinase_Tyr  Protein tyrosine kinase
    2.1e-17   63.4   0.0    3.8e-17   62.5   0.0    1.4  1  Pkinase      Protein kinase domain
  ------ inclusion threshold ------
      0.056   13.0   0.0       0.11   12.0   0.0    1.5  1  RIO1         RIO1 family


Domain annotation for each model (and alignments):
>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   7.5e-22   4.5e-18      45     247 ..      42     233 ..      32     242 .. 0.87

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 7.5e-22
                  HHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTE CS
  Pkinase_Tyr  45 keelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkv 141
                  + +l +e +  k+l +hp i  ++g+  +++   i++e  +g +L++  ++ + + + ++++l++a++ A G++y++ k ++H d+ + N +l+++++
   KKY13891.1  42 HIDLATERQAYKRLgSHPSIAGYYGATKNGS--AIILE--RGKCLRDIYQQVNADDIPIHEKLRWATEAATGLRYIHGKGIIHADVGCSNLILTQDRH 135
                  56788999999***************99654..57777..56689999999999******************************************** PP

                  EEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTS.HHHHHHHHHHTTEE.S-BBTTSBHHHHHH CS
  Pkinase_Tyr 142 vkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypgl.kneevleklkegkr.lekpekcpeelyel 237
                   k  Df+ ++         + eea+++++W+     +  +++ ++D++++G +++Ei t g+ py ++   ++ ++++++ ++  + p+  +  l el
   KKY13891.1 136 LKFIDFAGSS--------IDGEEATVCYEWCTYRP-SVPTISIQTDIFAYGCTIFEIET-GRPPYYEFeLRSDRTRHIERLYQeHKFPNLQHLMLGEL 223
                  ******8554........3689999*****98754.45679****************99.********6677888899888773566777788899** PP

                  HHHHT-SSGG CS
  Pkinase_Tyr 238 mkkcweedpe 247
                  +++cw+++ +
   KKY13891.1 224 IRNCWDNKFR 233
                  *****99865 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.0   6.4e-21   3.8e-17      43     229 ..      43     214 ..      27     251 .. 0.72

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 6.4e-21
                 HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH..HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEE CS
     Pkinase  43 kkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladlle..rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelK 138
                  ++++E +  k+l  hp i  +y++ ++ + ++l         l d+++  +   ++ +e  ++a++ ++gl+y+H kgiiH D+  +N+++ ++++lK
  KKY13891.1  43 IDLATERQAYKRLGsHPSIAGYYGATKNGSAIILERGK----CLRDIYQqvNADDIPIHEKLRWATEAATGLRYIHGKGIIHADVGCSNLILTQDRHLK 137
                 56789********99**********9988877754444....456666644445688888899************************************ PP

                 E-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HH CS
     Pkinase 139 itDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpe 229
                  +DF  ++   ++ ++  + +  +Y++        +s ++D++++G++++e+ tg+pp+++ + +++ ++++++      +   ++ k+p+
  KKY13891.1 138 FIDFAGSSIDGEEATVCYEWC--TYRP-S---VPTISIQTDIFAYGCTIFEIETGRPPYYEFELRSDRTRHIER------LY--QEHKFPN 214
                 ****76665555443333333..4543.3...34679***********************54444444333333......22..2233333 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.9e-05      0.11     121     150 ..     112     142 ..      83     152 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.9e-05
                 HHHTSTEEESS-STTSEEEETT.EEEE--GT CS
        RIO1 121 lykeaglvHaDLSeyNvlvded.kvviIDvs 150
                  ++  g++HaD+   N+++++d ++ +ID++
  KKY13891.1 112 YIHGKGIIHADVGCSNLILTQDrHLKFIDFA 142
                 456899****************9******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1642.37
//
Query:       KKY13892.1  [L=285]
Description: putative phosphatase dcr2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-10   41.9   0.2    2.9e-10   41.0   0.2    1.4  1  Metallophos    Calcineurin-like phosphoesterase
     0.0013   18.9   0.2     0.0023   18.2   0.2    1.4  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.2   3.3e-14   2.9e-10       1      75 [.     182     275 ..     182     284 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 3.3e-14
                  EEEEEEESBTB.................TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS..HHHHHHHHHHHHHHHHTSEEEEEC-TTS CS
  Metallophos   1 lrilvigDlHl.................algggqlddllkllddllreekpdlvllaGDlvdrg..dlekellellaalvkypipvylllGNHe 75 
                  ++i++i+D+H                    +++  + ++ l+ ++l+ ekpdlv+l+GD  ++   d +++l + +a+ +++ ip++++ GNH+
   KKY13892.1 182 FKIVQISDMHMvtgvgvckdavdahgknLPECEADPLTVHLIGNILDVEKPDLVILTGDQLHHDisDSQSALFKAVAPIIERSIPFAAVFGNHD 275
                  79*********9999999988888887777777777777999999999***********8888777777779999******************* PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2   2.5e-07    0.0023       2      63 ..     183     276 ..     182     285 .] 0.69

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.5e-07
  Metallophos_2   2 klaiiSDlH................snldaleav..........lealkevgvdaiihaGD.....l...eeeepevleellela.pvlaVrGNnD 62 
                    k++ iSD+H                +    l+++           ++l+ +++d++i++GD     +   + + +++++ ++e+  p+ aV+GN+D
     KKY13892.1 183 KIVQISDMHmvtgvgvckdavdahgK---NLPECeadpltvhliGNILDVEKPDLVILTGDqlhhdIsdsQSALFKAVAPIIERSiPFAAVFGNHD 275
                    67778888888888888877774442...333335557776776666677889********7777734423344468888888889********** PP

  Metallophos_2  63 e 63 
                    +
     KKY13892.1 276 S 276
                    3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2091.83
//
Query:       KKY13893.1  [L=614]
Description: hypothetical protein UCRPC4_g06909 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-06   27.5   1.7      0.057   13.7   0.2    3.2  3  TPR_12    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.024   14.5   3.4       0.05   13.5   1.3    2.4  2  TPR_10    Tetratricopeptide repeat
      0.084   13.5   0.3        1.3    9.9   0.2    2.8  3  TPR_4     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.16   9.5e+02      25      47 ..     351     373 ..     341     376 .. 0.87
   2 !   13.7   0.2   9.6e-06     0.057       5      36 ..     495     525 ..     492     530 .. 0.88
   3 !   10.2   0.0   0.00012      0.69      14      64 ..     547     597 ..     539     600 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.16
      TPR_12  25 llekaleiarrllGpdhpltatt 47 
                  l ka ++++++l  +hp t+++
  KKY13893.1 351 ALSKASALVEQILRAEHPRTLAC 373
                 68899**************9987 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 9.6e-06
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrl 36 
                 +l nla+ l+r++r+d+A+++  +++ + +r 
  KKY13893.1 495 ML-NLAHNLNRQERHDDAEAMALEVHSLLQRE 525
                 45.**********************9999886 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00012
      TPR_12  14 rrlgrydeAlellekaleia.rrllGpdhpltattlrnLgrlyralgryeeA 64 
                 + +g+ + A++  ++a+e++  ++ G +hp+ ++  + L  ++ra+gr e+A
  KKY13893.1 547 FNQGNAASAEQTMHEAMELIvDQW-GIQHPWILEFKNVLEGWLRAWGREEDA 597
                 579*****************7777.9***********************999 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.3   8.3e-06      0.05       4      34 ..     494     524 ..     493     525 .. 0.90
   2 ?   -0.2   0.0      0.18     1e+03      13      30 ..     547     564 ..     543     566 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.3e-06
      TPR_10   4 slnNLanalrqrgrydeAealleealairrr 34 
                  + NLa+ l ++ r+d+Aea++ e+ ++ +r
  KKY13893.1 494 VMLNLAHNLNRQERHDDAEAMALEVHSLLQR 524
                 589*******************999888765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.18
      TPR_10  13 rqrgrydeAealleeala 30 
                 +++g+ + Ae+ ++ea++
  KKY13893.1 547 FNQGNAASAEQTMHEAME 564
                 789999999999999987 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.5   1.5e+04       8      18 ..     412     422 ..     412     423 .. 0.85
   2 ?    9.9   0.2   0.00022       1.3       1      24 [.     492     515 ..     492     517 .. 0.93
   3 ?    0.2   0.0      0.29   1.7e+03      11      25 ..     546     560 ..     544     561 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.5
       TPR_4   8 ArallalGdld 18 
                 A+ +++lG+ld
  KKY13893.1 412 AQICQLLGELD 422
                 788999**998 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00022
       TPR_4   1 arallaLArallalGdldeArall 24 
                 +r+ l+LA  l ++ ++d+A+a++
  KKY13893.1 492 PRVMLNLAHNLNRQERHDDAEAMA 515
                 7899******************97 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.29
       TPR_4  11 llalGdldeAralle 25 
                 ++ +G+++ A+++++
  KKY13893.1 546 QFNQGNAASAEQTMH 560
                 6779*******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 4186.35
//
Query:       KKY13894.1  [L=1192]
Description: putative pheromone processing endoprotease kex2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-34  119.1   3.8    2.2e-34  119.1   3.8    1.6  2  Peptidase_S8  Subtilase family
    6.6e-28   96.6   0.8    1.4e-27   95.5   0.8    1.6  1  P_proprotein  Proprotein convertase P-domain
    2.4e-17   62.9   0.1    1.1e-16   60.8   0.1    2.2  2  PX            PX domain
    6.9e-09   35.6   6.1    0.00045   19.8   0.4    2.2  2  Vps5          Vps5 C terminal like
  ------ inclusion threshold ------
      0.012   15.4   0.1      0.026   14.4   0.1    1.5  1  Sec34         Sec34-like family
      0.048   13.6   1.9      0.091   12.7   1.9    1.4  1  CHAD          CHAD domain
      0.057   13.1   2.0       0.79    9.3   2.0    2.2  1  BAR           BAR domain


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   3.8   8.7e-38   2.2e-34       2     298 .]      73     350 ..      72     350 .. 0.82
   2 ?   -2.9   0.0       1.2   3.1e+03     206     224 ..     558     578 ..     557     595 .. 0.70

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 8.7e-38
                   TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-SS CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   2 kgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvld 98 
                   +g + a++D+G+d    dl+ ++  e +++         fn+++ e+ +++  +d+      HGt++AG +aa  +++ + +g a++ ki+++++l+
    KKY13894.1  73 NGSISAIVDDGLDMYSDDLKGNYYAEGSYD---------FNDQTDEP-KPRLFDDK------HGTRCAGEVAAV-KNNVCGVGMAYDSKIAGIRILS 152
                   566679999999999999998877777764.........77776655.44555555......************.*********************8 PP

                   TTSB-HH..HHHHHHHHHHHH.CT-SEEEE-EESCETTCHHCHHHHHH.......HHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTC CS
                   xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  99 tsggsmetgteliraieeaae.dkvdvinmslgestslpktgrsieal.......ainravnkkgvlvviSaGNngktgsslqagspvgtpstsknv 187
                   +  +     +   +ai +    dk d++++s+g + +++k+ +++  +       a++++++ +g+++v++aGN   +g+  +++ +++t+s +   
    KKY13894.1 153 KIISDE---D---EAIAMNYGyDKTDIYSCSWG-PADDGKSMEVPPMVvqramvnAVQKGRDGRGSIYVFAAGNGAASGD--NCNFDGYTNSIYS-- 238
                   877554...2...4455555556**********.888888888887558999999*********************9999..**********999.. PP

                   EEEEEESTTSSB-TT--B-TT.......-EEEE-S-..CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCCS- CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 188 itvgayttegkiapfSsrGpssdgklkpdivapGgn..ivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpetvraallntAq 282
                   itvga++ +g+  ++S+ ++++       +++  g+  +++t +  +    +++s  ++ GTS+A P++ g+aAl ls  p+lt+++++ + +ntA 
    KKY13894.1 239 ITVGAIDRAGNHPYYSEACSAQL-----VVTYSSGEgdSIHTTDVGT----NECS-AAHGGTSAAGPLMVGVAALALSVRPDLTWRDLQYLCVNTAV 325
                   *********************98.....7777777734454444444....4454.799*************************************9 PP

                   EE...............SSSSSSTT CS
                   xx.........xxxxxxxxxxxxxx RF
  Peptidase_S8 283 dl.........gkadniesfaqGaG 298
                   ++          +  +  s+++G+G
    KKY13894.1 326 PVheddsewqtTTIGKKFSHQFGYG 350
                   9987777776633333466666766 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.2
                   -TT.......-EEEE-S-..C CS
                   xxxxxxxxxxxxxxxxxx..x RF
  Peptidase_S8 206 GpssdgklkpdivapGgn..i 224
                   G  +d++ kp+i+a ++    
    KKY13894.1 558 GEDQDEETKPEISASASTtaT 578
                   67789999******9998421 PP

>> P_proprotein  Proprotein convertase P-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.8   5.6e-31   1.4e-27       1      86 []     410     496 ..     410     496 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.5 bits;  conditional E-value: 5.6e-31
                   EEEEEEEEEEEESSGGGEEEEEE-TTS-EEEEE---TT---SS-EEEEEEEESTTTTS---EEEEEEEEE.SSTT--EEEEEEEEEE CS
  P_proprotein   1 lehvqvsvnithtrrgdlritLvsPsGtrsvLlnrrgkdksrsgfldwtfmsthlwgeraeGeWkLevkd.seeedtgtlkswkLrl 86 
                   lehv+v++n++htrrgdl+++L sPsG +s+L   r+ d++++g++dw+fms+++wge+  G+W++ vkd + ++d+gt+ +w+L+l
    KKY13894.1 410 LEHVTVTMNVNHTRRGDLSVELRSPSGIVSHLSVARRFDEHKNGYQDWNFMSVAHWGEDGIGTWTVVVKDaQVNDDEGTFIDWRLNL 496
                   69**********************************************************************************985 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.1   4.3e-20   1.1e-16      16     111 ..     781     883 ..     766     885 .. 0.91
   2 ?   -3.2   0.0       3.2   8.1e+03      43      60 ..    1039    1056 ..    1038    1101 .. 0.70

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 4.3e-20
                 TSSEEEEEEEEEETTS.....SSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSS...CTTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHH CS
          PX  16 skkhsyylyevelktg.....akewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsv...rkkdeefiekrrkgLeeyLqrllnhpelrnsevl 106
                 +  + y+ y v++++      ++ +tv+Rr+ dF+ L++ L +++p++ +PplP+k+ ++ +   ++++++f+++r  +L ++++rl  hp+lr+ ++l
  KKY13894.1 781 GTPNPYVSYLVTTHSDfksfqKSDFTVRRRFTDFVFLRNTLFKEYPACAVPPLPEKNNLS-YvrgDRFSTDFTQRRAWSLHRFIKRLTLHPVLRRAPIL 878
                 55578999999999999999*************************************997.569*********************************** PP

                 HHHHH CS
          PX 107 teFLe 111
                   FLe
  KKY13894.1 879 LLFLE 883
                 ****9 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.2
                  HHHHHHHHHHHHHTTSTS CS
          PX   43 dFeeLhskLlrkfprvki 60  
                  dFe L ++L++   ++ i
  KKY13894.1 1039 DFEALTEYLTKASSERDI 1056
                  677777777766664444 PP

>> Vps5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.4   1.8e-07   0.00045       3     146 ..     908    1049 ..     906    1071 .. 0.86
   2 !   18.0   2.1   6.2e-07    0.0016     142     235 ..    1074    1167 ..    1034    1168 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.8e-07
        Vps5    3 slfkkltssisksstkfeEqDewFedkkqeldslesqLkkLykaiellvsqrkelasataelakslesLaslelskslsralsqla.eveerikell 98  
                  ++f+++ +++ ++ +k++ +D+ F++  ++  +l++ L +++k i+ + +  ++l +   +la+ + +L  le  +++ + l+ +a  + e+ +  +
  KKY13894.1  908 GIFDSVADTFVNAFSKVHKPDKRFIEVLEKAHKLDEDLSHVEKIISRVARRESDLETDYSDLANNMRKLVPLE--PAIEAPLQIFAaSIDETSRGWA 1002
                  56888999999999*******************************************************8877..6788899998625778888888 PP

        Vps5   99 erqaeqdvltLgetideylrligsvksvfeqRvklwqkwqsaeqelsk 146 
                  +  ++ d+ +Lg  +++   +i s+ks++++R +     +   + l+k
  KKY13894.1 1003 TLRNHTDQNYLGS-LRDMEAYILSLKSLLKTREQKQLDFEALTEYLTK 1049
                  8899999999997.6999**************8766555555555555 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 6.2e-07
        Vps5  142 qelskkkeqleKlekaaksqqdklqqlkkeveelerkvqeaekeFeeisetikkElerFetervedfknvvekyLesaiesqkevielWetfls 235 
                  +++ + k +  +   ++  +++++++l+  +eel+r v++a++  e   e++ +E++ Fe+ +  +f+ ++    e   +  + v++ We+fls
  KKY13894.1 1074 ANFIRSKMEDMRGVDHEAARRERVRKLELRIEELTREVESAKRTSEMFDEEVVREVSDFERIKGVEFRDTLGGLAEREADFYRGVVSTWERFLS 1167
                  344455544444444556778***********************************************************************97 PP

>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1     1e-05     0.026      10      73 ..     929     992 ..     921    1038 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1e-05
       Sec34  10 eecdelleqtdealeqLeeleekfksvsektsslheaceqlleeqkrleelaeeieekLkyFee 73 
                 +++ e+le+++++ e+L+++e+  ++v+ + s+l+++  +l ++ ++l  l  +ie+ L++F++
  KKY13894.1 929 KRFIEVLEKAHKLDEDLSHVEKIISRVARRESDLETDYSDLANNMRKLVPLEPAIEAPLQIFAA 992
                 667789********************************************************74 PP

>> CHAD  CHAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.9   3.5e-05     0.091      39     139 ..     987    1125 ..     982    1183 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.5e-05
                  HHHTTTSS-HHHHHHHHHHHHHHHHH..HHHHHHHHHHHHTHHHHH.HTS-TTTCGGGHHHHHHHHHHHH..........................H CS
        CHAD   39 lrlfapvldkeeaaalekelrwlara..LGeaRDldVllerllsrleerlpaaeqealerllkrlekerk..........................r 107 
                  l++fa+ +  +e+++  + lr+++ +  LG +RD + ++ +l+s l  ++ +++q  +e+l ++l+k+                            +
  KKY13894.1  987 LQIFAASI--DETSRGWATLRNHTDQnyLGSLRDMEAYILSLKSLL--KTREQKQLDFEALTEYLTKASSerdilassnpytsstssnlnpanfirS 1079
                  78887777..567777777777765444*****************9..6777777788888888888877778999999999999999999998884 PP

                  HHHHHH....HHHTSHHHHHHHHHHHHHHT--S--..........T CS
        CHAD  108 ararvl....aaLdsaryqalldaldallaaerle..........a 139 
                  + ++++    +a + +r ++l +++++l+++ + +           
  KKY13894.1 1080 KMEDMRgvdhEAARRERVRKLELRIEELTREVESAkrtsemfdeeV 1125
                  4444445556999999999999999999976665533333333330 PP

>> BAR  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.0   0.00031      0.79     108     227 ..     997    1159 ..     928    1171 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00031
         BAR  108 laqteeelekrvetnfldplrellekefkeiqkerkklehkrlDyDaakarlkklktkkskkakde............................... 173 
                   +  +++l   + +n l  lr +  +++  +++ +k +e+k+lD+ a ++ l k+ ++ +  a+++                               
  KKY13894.1  997 TSRGWATLRNHTDQNYLGSLRDME-AYILSLKSLLKTREQKQLDFEALTEYLTKASSERDILASSNpytsstssnlnpanfirskmedmrgvdheaa 1092
                  5556778888999999******99.******************************988887777667777777777777777777777777777777 PP

         BAR  174 ............ekaeeelrkAqqkfeesneelkaeLpnllalevefv.nqlqafveaqldfhkqaa 227 
                              e++++e+++A+   e + ee+ +e  ++   +   + ++l +++e ++df++ + 
  KKY13894.1 1093 rrervrklelriEELTREVESAKRTSEMFDEEVVREVSDFERIKGVEFrDTLGGLAEREADFYRGVV 1159
                  7777777777777777777777777777777777777777665544444777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       880  (0.0490825); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.55
# Mc/sec: 6487.63
//
Query:       KKY13895.1  [L=1541]
Description: hypothetical protein UCRPC4_g06900 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-07   31.3   0.0    3.3e-07   29.6   0.0    1.7  1  PhoD      PhoD-like phosphatase


Domain annotation for each model (and alignments):
>> PhoD  PhoD-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.9e-11   3.3e-07      17     308 ..     818    1160 ..     794    1180 .. 0.62

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.9e-11
        PhoD   17 yrelaee...edlDlvlhlGDyiYeyg..pgeyaseaaelgrevepp.........keivtlad.YReryaqyktdadlqaahaaapfivvwDDHEv 98  
                  +r++ ++     + +++  GD iY ++   ++ + +  e  r ++p+         + + +l+  Y +ry    +   +  a++++p++ vwDDH +
  KKY13895.1  818 WRDVLNThqsRPFHVMIGGGDQIYNDRvmIETTHFA--EWLRMKNPHekhhteftpEMAHELETfYLNRYCMWFSQGLFGMANSQIPMVNVWDDHDI 912 
                  5555553322377888999*******7542222222..111221111345555777666777653778999999999999***************** PP

        PhoD   99 aNnswsggaenhqeetegdfekrkaaAlqAyfEw..mPireak.................pgeeeriyrsfeyGdladlflLDtRqyrrdqavsye. 175 
                   +  + +    h   +   f+ + + A++ y+ +  + + e++                 ++++++++  +++G+ ++++ LD R+ r++ ++  + 
  KKY13895.1  913 IDG-FGS-YPDHF-MRAPVFSGLGNIAFRYYMLFqhQSVPEETdrdepswllgpevgpyiTQRSRNLF--MSLGKGLTFLGLDCRTERKRDEIMSDa 1004
                  **9.555.44444.588899999999999996551144444422344444444333332223334444..4679999**************996655 PP

        PhoD  176 ......gdeleaaeaevk...dpartlLGe....eQeqwLkaeLkasrar.Wkvlaqqvlmskvdldaelaega.lpvnlDaw..dGypaeRerlle 255 
                        ++    +++ v+   ++   lLG     + + wL++ L++   +  k l+   +++   l++     + l    D w   G + eR++l++
  KKY13895.1 1005 tihevlDR---CRREIVEgdtKHLLVLLGVpiayPRLVWLENVLTSRAMNpIKALGRARILKGSFLNKFDGGVEiLDDLDDHWtaSGHKGERQDLIQ 1098
                  55333222...22333332113335677862222578899999987777788999988888777744333333334445677777899*****9999 PP

        PhoD  256 tikeakirnvV...vLtGDvHaawandl....dykdpdg..eavgvEfvtgsvssgglgeyl 308 
                   +++ + ++ V   +L+GDvH a+++++    +yk p+   ++ +  +v++++  +  ge+l
  KKY13895.1 1099 DLQDLAAEKSVritILGGDVHLAAVGQFytnpKYKIPKDrdHRYMPNVVSSAICNTPPGEML 1160
                  98777666665222788***********6654233333233566666666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 10293.28
//
Query:       KKY13896.1  [L=300]
Description: hypothetical protein UCRPC4_g06901 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2028.69
//
Query:       KKY13897.1  [L=706]
Description: putative 2og-fe oxygenase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-77  260.3   0.0    7.6e-74  248.3   0.0    2.3  2  Ofd1_CTDD       Oxoglutarate and iron-dependent oxygenase deg
    2.4e-26   92.2   0.0    1.4e-25   89.8   0.0    2.2  2  2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
    6.1e-14   52.7   0.0    1.7e-13   51.2   0.0    1.8  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> Ofd1_CTDD  Oxoglutarate and iron-dependent oxygenase degradation C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   7.8e-05      0.47     106     188 ..     116     203 ..      62     255 .. 0.74
   2 !  248.3   0.0   1.3e-77   7.6e-74       2     249 ..     340     652 ..     339     658 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 7.8e-05
                 HHHH.HHHHSHHHHHHHHHHHSE.EE..-EEEEEEEEE-TTT-EE--BE----GEEEEEEEEE-.--S-TTTSTT---EEEE....E--- CS
   Ofd1_CTDD 106 keLlekllkskafrkwlalitgldll..tsesilarRfrpGkdytLatsteeeeavLevtlnlt.ptkgWesgevGGyelym....agdd 188
                   L  + l s +fr++++ itg+  l  +++++ +  + pG  + L +++   + ++   l+lt p + W+ +  G+  ly     +++d
  KKY13897.1 116 LSLR-DALYSAQFREYVSHITGAGKLsgKKTDMAINVYTPG-CHLLCHDDVIGSRRVSYILYLTdPDRPWKAEWGGALRLYPtetkKTKD 203
                 3444.7789*************98886688999********.899999999999*********934567988888888888743332233 PP

  == domain 2  score: 248.3 bits;  conditional E-value: 1.3e-77
                 HHHHHTTTB-GGGTSHHHHHHHHHHHHHHSEEEESS-B-HHHHHHHHHHH..HHHHHHS----SGGG--TT-EE-B-TTTEE-EEE-SSS----SSHHH CS
   Ofd1_CTDD   2 elefLlkylnpeYLtketveelqeqfeeessieledfLkkeiaeklkksleseekekekelpqkseeiekpWkvagPphkqrylyldseeatekkeeed 100
                 +l+fLlky++p++Lt++++e+l+  f+ es +++++fL++++a+++ +++e++e+ ++          +++W +a Pp k+ry++l+++  ++      
  KKY13897.1 340 DLDFLLKYIAPSFLTPDMTEQLEAAFTMESLLSIDRFLSDKFATRVSEYVEQQEASSK----------SSDWPIAEPPFKHRYAFLQPSADKS------ 422
                 899***********************************************88888863..........348*****************99653...... PP

                 HHHHHHHHH.HHHHSHHHHHHHHHHHSE.EE..-EEEEEEEEE-TTT-EE--BE----G...................EEEEEEEEE---S-TTTS... CS
   Ofd1_CTDD 101 aeeklkeLlekllkskafrkwlalitgldll..tsesilarRfrpGkdytLatsteeee...................avLevtlnltptkgWesg... 175
                 ++++++eL + l++s+afrkwla++tgl+     s+++larRfr+G+dy La+  + ++                   +++e+tlnltpt+gWe     
  KKY13897.1 423 SDSPIQELINILFPSQAFRKWLAQATGLHSSnlISHNLLARRFRRGQDYALASGFNGDDiehveddaasqpsdpdaggMRIEFTLNLTPTSGWEPLsne 521
                 458************************95433389******************999988999********************************88889 PP

                 .....................................TT---EEEEE------................--------....------EEEEE---EEEE CS
   Ofd1_CTDD 176 .....................................evGGyelymagdddee................eDpavYks....ddeddsvLlslaaswNsl 217
                                                      + GG e+yma ddd+                 +DpavYks    +d+dd++L+++++swN+l
  KKY13897.1 522 dceeeeedaevngdssgrqpkanghgegkeadaedfnSPGGEEVYMAADDDDAasvcshnstsqkkkskSDPAVYKSkteeEDDDDGILFTNPPSWNTL 620
                 ************************************999*******99999889**************************99***************** PP

                 EEEEEETTEEEEE----TT-SS-EEEEEEEEE CS
   Ofd1_CTDD 218 slvlrdegvlkFvKYvsasakgsrwdvsgeye 249
                 s+vlrdeg+l+FvKYvs++akg+rwd++ge++
  KKY13897.1 621 SIVLRDEGTLRFVKYVSQNAKGDRWDIKGEIG 652
                 ****************************9975 PP

>> 2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0   2.4e-29   1.4e-25       1      93 []     147     264 ..     147     264 .. 0.78
   2 ?   -0.8   0.0      0.43   2.6e+03      55      90 ..     612     649 ..     599     651 .. 0.67

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 2.4e-29
  2OG-FeII_Oxy_4   1 lsvssYekgdvllnHdDvlegeRrvayilyle...eeWkeddGGaLllsdde......g........dvtksivPkwnqlvlFevkes...hsva 75 
                     + +++Y+ g++ll+HdDv +g+Rrv+yilyl+   ++Wk+++GGaL+l+ +e      g        d+t si+P++ ql +F+v+++   h+v+
      KKY13897.1 147 MAINVYTPGCHLLCHDDV-IGSRRVSYILYLTdpdRPWKAEWGGALRLYPTEtkktkdGeeiktpshDFTVSIPPAFSQLSFFAVQPGesyHDVE 240
                     6799**************.9***********87778**********9985442233331334344446799**************8533489999 PP

  2OG-FeII_Oxy_4  76 evas......vaekeRlsisgWfh 93 
                     ev +      +++++R++isgWfh
      KKY13897.1 241 EVYHgetedeSEKRTRMAISGWFH 264
                     995323334367789********9 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.43
  2OG-FeII_Oxy_4  55 sivPkwnqlvlFevkes..hsvaevasvaekeRlsisg 90 
                     + +P+wn+l +    e+    v+ v + a+ +R+ i g
      KKY13897.1 612 TNPPSWNTLSIVLRDEGtlRFVKYVSQNAKGDRWDIKG 649
                     56899999987666443345666666667778877766 PP

>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   2.9e-17   1.7e-13       2      96 .]     148     264 ..     147     264 .. 0.92

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 2.9e-17
                     EEEEE-TT-EEEEE-SS----TT.-.EEEEEEEEE........ET-B--EEE.........................---TT-EEEEE-..B-T. CS
  2OG-FeII_Oxy_3   2 qvlrygegqeykpHvDnfekeegsgqrrltvllyLne....keseeGGelelyekdk...............eavkikpkkgrlvlFesdellp. 76 
                      +++y +g+++ +H+D +      g+rr++++lyL++    +++e+GG+l+ly++++                +v+i+p + +l +F ++  ++ 
      KKY13897.1 148 AINVYTPGCHLLCHDDVI------GSRRVSYILYLTDpdrpWKAEWGGALRLYPTETkktkdgeeiktpshdFTVSIPPAFSQLSFFAVQPGESy 236
                     6899************86......78**********99999999***********99************999999999**********9777659 PP

                     EEE--B.-SS........-EEEEEEEEE CS
  2OG-FeII_Oxy_3  77 Hevlpvtkgg........eRlsltgwir 96 
                     H v++v +g         +R++++gw++
      KKY13897.1 237 HDVEEVYHGEtedesekrTRMAISGWFH 264
                     99999987668999999**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.49
# Mc/sec: 4319.50
//
Query:       KKY13898.1  [L=113]
Description: putative glutathione-dependent formaldehyde-activating [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       934  (0.0520944); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 821.16
//
Query:       KKY13899.1  [L=462]
Description: putative hlh transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-15   55.6   2.5    5.8e-15   55.0   1.7    1.8  2  HLH         Helix-loop-helix DNA-binding domain
     0.0012   18.6   1.1     0.0019   17.9   1.1    1.3  1  Phage_GPO   Phage capsid scaffolding protein (GPO) serine pep
     0.0014   19.2   5.8     0.0026   18.3   5.8    1.4  1  APG6_N      Apg6 coiled-coil region
     0.0015   18.5   5.6     0.0015   18.5   5.6    2.2  2  FlxA        FlxA-like protein
  ------ inclusion threshold ------
       0.29   10.3   1.8       0.44    9.7   1.8    1.2  1  RE_HindIII  HindIII restriction endonuclease


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.6   9.5e+03      15      23 ..     123     131 ..     122     132 .. 0.86
   2 !   55.0   1.7   1.6e-18   5.8e-15       2      53 .]     307     357 ..     306     357 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.6
                 HHHHHHHHH CS
         HLH  15 riNsaleeL 23 
                 r+N+++++L
  KKY13899.1 123 RMNQGMDRL 131
                 89***9999 PP

  == domain 2  score: 55.0 bits;  conditional E-value: 1.6e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHCSTCSTTSS-STHHHHHHHHHHHHHHHH CS
         HLH   2 raahnerErrRRdriNsaleeLrellPslppskKlsKaeiLekAveYIkhLq 53 
                 r++h+++Er+RR ++++++e Lr  lP ++++ K sK e+L +A+eYI++L+
  KKY13899.1 307 RVTHKLAERKRRSEMKDCFEMLRARLP-QNSNNKSSKWETLNRAIEYINQLE 357
                 89*************************.9*********************96 PP

>> Phage_GPO  Phage capsid scaffolding protein (GPO) serine peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   1.1   5.2e-07    0.0019     162     263 ..     309     410 ..     278     419 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.2e-07
   Phage_GPO 162 alefeeeeeeeegeslferikallskkkksddarfadveeavelvAeevkelsekveallaleaelaalkkeveklkaeleaLkekLsktdakekqrpe 260
                 + +++e+++++e+++ fe ++a l +++++++ +   +++a+e + +  ++l+++ ++  +l+ + a+++ ++++++ +l++L+++ s + ++++q p 
  KKY13899.1 309 THKLAERKRRSEMKDCFEMLRARLPQNSNNKSSKWETLNRAIEYINQLERNLRDSSKEIRNLHLQRAEMQMQIKDMSIQLDRLQQQHSYDHHNANQHPG 407
                 4567888888889********************************************9*9**************************9999999999999 PP

   Phage_GPO 261 atG 263
                 ++G
  KKY13899.1 408 SAG 410
                 998 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   5.8   7.2e-07    0.0026      23     108 ..     316     405 ..     308     406 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 7.2e-07
      APG6_N  23 kerdaYeeflkklkkekkeeek....qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynel 108
                 k r +++++ + l+++ +++++    + e l+++ e + +le+  ++  +e+++l  +r+e++ ++++ + +l++l+++     +  n++
  KKY13899.1 316 KRRSEMKDCFEMLRARLPQNSNnkssKWETLNRAIEYINQLERNLRDSSKEIRNLHLQRAEMQMQIKDMSIQLDRLQQQHSYDHHNANQH 405
                 4555666666666666555544444477788888888*****************************************998888777765 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   2.9       2.7   9.5e+03      69      79 ..      71      81 ..      69     101 .. 0.51
   2 !   18.5   5.6   4.1e-07    0.0015      11      82 ..     335     405 ..     329     410 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.7
        FlxA 69 qqqqaekaqek 79
                q+qq+++   +
  KKY13899.1 71 QSQQQQQPHAS 81
                33333333333 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 4.1e-07
        FlxA  11 sssgsasqiasLqkQiknlqkqLkelsesdeltkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaqekqqs 82 
                 +s++ +s+ ++L++ i+ +++  ++l +s ++   +   q+ ++q QI+++  Q+ +lqqq + +  +++q 
  KKY13899.1 335 NSNNKSSKWETLNRAIEYINQLERNLRDS-SKEIRNLHLQRAEMQMQIKDMSIQLDRLQQQHSYDHHNANQH 405
                 6888999***********99999999999.77788899************************9998888775 PP

>> RE_HindIII  HindIII restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.8   0.00012      0.44     179     257 ..     313     392 ..     299     402 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00012
  RE_HindIII 179 spteaerlLkeyakivaaldpaklkeakaYWskinqtilklaettkellreeklaasel.lkea.kqeelarleaekerir 257
                    + +  +k+ ++++ a  p++  +++  W+++n  i  + ++++ +lr++ +  ++l l++a +q +++ ++ + +r++
  KKY13899.1 313 AERKRRSEMKDCFEMLRARLPQNSNNKSSKWETLNRAIEYI-NQLERNLRDSSKEIRNLhLQRAeMQMQIKDMSIQLDRLQ 392
                 333444448**************************998776.567788888887777652444325667777776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1132  (0.0631379); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.52
# Mc/sec: 2651.71
//
Query:       KKY13929.1  [L=808]
Description: putative beta-glucosidase 1 precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-52  176.2   0.4    1.7e-51  175.1   0.4    1.6  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
    6.6e-35  121.0   0.0    1.1e-34  120.2   0.0    1.3  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    7.5e-16   58.0   0.0    1.5e-15   57.1   0.0    1.5  1  Fn3-like         Fibronectin type III-like domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.1   0.4   2.8e-55   1.7e-51       1     204 []     346     604 ..     346     604 .. 0.89

  Alignments for each domain:
  == domain 1  score: 175.1 bits;  conditional E-value: 2.8e-55
                      -EEEEEGSS--S-S-STEEEEEESGGGS................SS-SS-BSSS----S---HHHHHHHHHHH...............-HHHHH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
  Glyco_hydro_3_C   1 iVLLkNennlLPLkkklkkiaviGpnad................etlklGggsgtvtvsylvsplegirerles.............eegidea 65 
                      +VLLkN n++LPLk + +++ ++G++a                 +tl +G+gsgt++++ylv+p ++i++++ +             + ++ + 
       KKY13929.1 346 TVLLKNTNGALPLKGTERQVGIFGEDAGsnaygangcsdrgcdnGTLAMGWGSGTANYPYLVTPEQAIQNYVLThtngttssitdnyAYESYRI 439
                      59***********99999******************************************************8899**********9888999* PP

                      HHHHHHTSEEEEEEEES...SB-TT........SCSGHHSSTTHHHHHHHHHHTTSSEEEEEEESSGG--TTT.GTTTEEEEEE-S--GCCHHH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C  66 veaakeaDvavvvvgedpeiegEgv........Drtdlalpeaqdelikavaaanknvvvvlqsggpvavepw.keenvkAilaawlpGqegGt 150
                       + a++a+va+v+v++d   +gEg+        Dr +l+  +  d+li++v+a+n+n++v+++s g+v+v++w +++nv+Ail+a lpGqe+G+
       KKY13929.1 440 PQLATQAEVALVFVNSD---SGEGYinvdgnegDRRNLTSWKDGDALIANVSAVNNNTIVIIHSVGTVDVSSWySNPNVTAILWAGLPGQESGN 530
                      *****************...7777777777777*****************************************999***************** PP

                      HHHHHHTTSS---B--SS-EESSSGGG............................S.-----S...ETTTT-BCH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx...............xx.xxxxxx...xxxxxxxxx RF
  Glyco_hydro_3_C 151 aiadvLfGdvnPsGkLpvtfpksledlpd..dyyeekdt...............yk.fegtpl...YpeGlglsY 204
                      +++dvL+G +nPs+kLp+t+ k+l+d+ +  +++ ++                 y+ f+ +++   Y++G+glsY
       KKY13929.1 531 SLVDVLYGYYNPSAKLPFTIGKKLSDYGTavQTTANN-GegapqvdftegvfidYRgFDAKNItpvYEFGFGLSY 604
                      ***************************4434333332.1234566777888888444444433444999999998 PP

>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.2   0.0   1.9e-38   1.1e-34      63     317 ..      29     285 ..      13     287 .. 0.87

  Alignments for each domain:
  == domain 1  score: 120.2 bits;  conditional E-value: 1.9e-38
                    ...S--EEEE---BTTB---SSS---S-HHHHHHHT-HHHHHHHHHHHHHHHHHHT--EE---B--.---STTSSSGGGSS-SSHHHHHHHHHHHH CS
  Glyco_hydro_3  63 rlgiPlllavDqegGlvqrlgegtlfPsalalaatssldlikelgriiakelralgididfaPvvd.vnrdprngigvrsFsedpelvaalaaamv 157
                    rlg++ l+  D  +G++ +   +  fP+ +  aat+++ l ++ g+++++e    g+d +++Pv   ++r p+ g++ +++s dp+l++al a +v
     KKY13929.1  29 RLGLRGLCLQDSPTGVR-DTDYNSAFPAGVNGAATWDRGLNYARGEAMGAEHNGKGVDAQLGPVCGpLGRSPDGGRNWEGYSPDPYLTGALIAPTV 123
                    78999999*******99.556569****************************************9559**************************** PP

                    HHHHHTT-EEEEEEETTGTT.....-SSETTTSEEB----.....HHHHHHTTHHHHHHHHHTT-SEEEE---B-TTT---BGGG-HHHHIIIIII CS
  Glyco_hydro_3 158 kGlqgagvaatvKHFpghGd.....gavdshkelptvdhs.....eeelrevdlvpfqaaieagvdsVMtaHvqfpaldgtpatgskklltdvLRk 243
                    +G+q+agv+at KH  g  +     ++   +++++ ++ s      + ++e +l pf  a++ag  s+M +   +++++++ a g+++ll  + ++
     KKY13929.1 124 QGIQAAGVMATTKHLVGNEQehfrqSSEAQGYGYNITESSssnidDKTMHELYLWPFADAVRAGTASIMCS---YNQVNNSYACGNSYLLNYLVKN 216
                    *****************743222214445678887765541111167889999******************...********************** PP

                    IS---SEEEES-TTSHHHHCCS-HHHHHHHHHHHT-SBEES-S---SG.....HHHHHHHHHTTSS-HHHHHHHHHHHH CS
  Glyco_hydro_3 244 elGFdGvvvsDalamkeiadrggkeeavvlaLkAGvDilLvpeertse.....ikalkkavkeGeltearidesvrrvl 317
                    el F+G+++sD+      a++gg ++     + AG+D+ +  ++           +l  a+ +G l++ r+d+ v+r++
     KKY13929.1 217 ELDFQGFIMSDWA-----ATHGGVSD-----ILAGLDMTMPGDTAFNSgltffGTNLTVAILNGTLPQYRLDDMVTRIM 285
                    ************9.....77777554.....67*******999887667999889**********************97 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   2.5e-19   1.5e-15       1      71 []     732     798 ..     732     798 .. 0.93

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 2.5e-19
                 EEEEEEEEESS-STTSBS-EEEEEEEEEE-TT-EEEEEEEEECGGG-EEETTTTEEE--SCEEEEEEESSS CS
    Fn3-like   1 evvqlYvsdpessverpvkeLkgFekveLapGesktvtftldrkdlsvwdeekqkwvvepGeytvlvgtss 71 
                 ev+qlYv   ++   +p+k+L+gF+k ++apG+s+t t +l+r+dls wd+ +q+w+ +  + tv+vg+ss
  KKY13929.1 732 EVAQLYVNLGPN---EPPKVLRGFDKLTIAPGASATFTAQLTRRDLSTWDTASQNWI-QVQNATVYVGASS 798
                 8*******9887...8***************************************96.5567899999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.51
# Mc/sec: 4744.31
//
Query:       KKY13930.1  [L=605]
Description: putative dna photolyase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-71  237.7   0.4    1.3e-70  237.0   0.4    1.4  1  FAD_binding_7   FAD binding domain of DNA photolyase
    8.9e-16   58.3   0.0    1.7e-15   57.4   0.0    1.4  1  DNA_photolyase  DNA photolyase


Domain annotation for each model (and alignments):
>> FAD_binding_7  FAD binding domain of DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.0   0.4   1.5e-74   1.3e-70       3     201 ..     263     524 ..     261     525 .. 0.90

  Alignments for each domain:
  == domain 1  score: 237.0 bits;  conditional E-value: 1.5e-74
                    HHHHHHHHHHHHHHCSTTTTTSSTTGCCTT.------HH..H...................HHHHHTT-SS-HHHHHHHHHHHHHS---HHHHHHH CS
  FAD_binding_7   3 reLlwrefyyallaaepelaeralkekfdr.ipweeseee.k...................leaWkeGrTGfPlvDAamrqLretGwmhnrlRmiv 77 
                    ++Ll+r++y+ ++aa  +  ++a  ++++r ipw+ ++ e +                   + +Wk+G TGfP++DA+mrqL++tGw+h+++R++v
     KKY13930.1 263 GQLLFRDMYFGAQAALGHQFAHADGNPICRfIPWHLQSCEiDqmspssssymidndisqthFLRWKNGLTGFPFIDALMRQLKHTGWIHHLGRHAV 358
                    69**************666689999999999***99755542577889999********************************************* PP

                    HHHHCT.TT-B-HHHHHHHHHHH-TT--CCHHHHHHHHHCT-STTS-STT----CCCCHHHCSTT-HHHHHH-GGGTTS-HHHHT-GGGSGCHHHH CS
  FAD_binding_7  78 asFltk.dLlidWregeevFeellvDadlasnagnwqwlagtgadaapafrifnpvkqgkkfDpegeyirrwvpeLkklpakyihepwkapaeeqk 172
                    a+Flt+  ++i+W++g++vFee+lvD+++a+n+gnw+wl++t   a+ ++r+++pv++gkk+Dpeg+++r+wvpeL+ +++k+++epwka+  +qk
     KKY13930.1 359 ACFLTRgGCYIHWERGAQVFEEWLVDHETACNVGNWMWLSCTAFFAQ-FYRVYSPVAFGKKWDPEGTFVRKWVPELRAFDKKFVYEPWKASVVDQK 453
                    *****************************************988888.66******************************************9999 PP

                    H..........................................HT--TTTSS---SS-HHHHHHHHHHHHH CS
  FAD_binding_7 173 k..........................................agvvlgkdYpkpivdhkearkraleayk 201
                    +                                             + +++Ypkp++d++e+r+ +l+ +k
     KKY13930.1 454 RwgcriegdgrsknakdskasgqpssqgsdpyvldlealyryiNPSEETTTYPKPMFDFNEQRELCLQGMK 524
                    988888888888888888888877777777777777777777666667777*****************998 PP

>> DNA_photolyase  DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   1.9e-19   1.7e-15      57     157 ..       2     106 ..       1     116 [. 0.87

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 1.9e-19
                     HHHHHHHHTT..--EEEEESSHHHHHHHHHHHCTECEEEEE---SHHHHHHHHHHHHHHHHCTSEEEEE--S.SSS-HHHH.HTTTSSSHSSHHH CS
  DNA_photolyase  57 dLdeeLrelg..irLvvrrgdpadvlpelakelgasavvanreyepdererdeavkealrkagievesfddh.tlvepgev.ktkkgkpykvFtp 147
                     dL ++L +l+   +L+v+r  p++vlp+l+k++g++++v++++++ ++rerde ++  +r+ag+ev+ +++  tl++ +e+ k ++gkp +   +
      KKY13930.1   2 DLSASLSKLNasQKLLVIREAPQTVLPKLFKKWGITHLVFEKDTDAYARERDEVIQGLAREAGVEVIVVSSGrTLYDSDELvKRNGGKPTMSMAQ 96 
                     79999999998899****************************************************8886555********555666***99999 PP

                     HHHCHHHHHC CS
  DNA_photolyase 148 frkrwlkelk 157
                      ++++++  +
      KKY13930.1  97 VQHAAKELGD 106
                     9997776443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.49
# Mc/sec: 3714.13
//
Query:       KKY13931.1  [L=330]
Description: putative vacuolar sorting receptor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-08   34.4   0.1    0.00063   19.8   0.0    2.2  2  CIMR           Cation-independent mannose-6-phosphate recepto
    2.5e-05   24.3   0.0      7e-05   22.8   0.0    1.6  1  ATG27          Autophagy-related protein 27
     0.0058   16.8   0.0      0.011   16.0   0.0    1.4  1  RNase_H2_suC   Ribonuclease H2 non-catalytic subunit (Ylr154p
     0.0098   15.0   2.4      0.062   12.4   0.0    2.6  3  Man-6-P_recep  Mannose-6-phosphate receptor
  ------ inclusion threshold ------
       0.28   11.4   3.8       0.43   10.8   1.5    2.1  2  ANAPC9         Anaphase-promoting complex subunit 9
       0.35   11.1   5.0       0.72   10.1   5.0    1.5  1  DUF4611        Domain of unknown function (DUF4611)
        7.4    7.0  10.0       0.45   10.9   2.9    2.2  2  PBP1_TM        Transmembrane domain of transglycosylase PBP1 


Domain annotation for each model (and alignments):
>> CIMR  Cation-independent mannose-6-phosphate receptor repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   4.4e-05      0.11      48     142 ..      25     135 ..      16     136 .. 0.70
   2 !   19.8   0.0   2.5e-07   0.00063       3      44 ..     181     224 ..     179     233 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.4e-05
        CIMR  48 dveCqvtdaag.keyDLsaLsrksenweavdtsasgkk.......khfyinvCk....peakiegCp..saaavClvdk..dksvNLGkvqsspqaedg 130
                    C+++ +++   +DL+++  ++ + +  d  +++++        +f +n C     +   +eg p  +aa + +  k  +k + +G  +++p     
  KKY13931.1  25 AKPCTIHSPNTgSYFDLTTIQAQAPSSKSKDARTESWHsrgydygANFTLNFCApvleDLEDVEGIPdrRAANISAFYKkeGKVYSIGEANTEPIFRGR 123
                 5568888776538889999988776555555555444311111115799****98888778888888533444444433358999************** PP

        CIMR 131 siqlsYvnGdkc 142
                 +++l+Y+nG  c
  KKY13931.1 124 KLVLNYTNGSPC 135
                 *********999 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 2.5e-07
        CIMR   3 qratvirFvCnet.aledapv..flkedigdcsylFewetalACv 44 
                  ++t+i F C+++ ++ d p   f + + + csy Fe + ++AC 
  KKY13931.1 181 TKSTIISFLCDRDpQYTDHPQisFIGTT-DSCSYHFEVRSRAACG 224
                 689********98457776651266666.9**************7 PP

>> ATG27  Autophagy-related protein 27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.8e-08     7e-05       4     201 ..      11     244 ..       8     258 .. 0.56

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.8e-08
       ATG27   4 llallaaasaa....ldCskivvdkglkkydlsklkgphsvstsee.tppskt......nttytldiCeplkkkkdvkkedqCpkgtrvCgitrvikkd 91 
                 l+++l+aa+++      C+ i+  +  + +dl+ ++ +   s+s++  ++s +        ++tl++C+p+ ++   ++ +  p+  r+  i   +kk+
  KKY13931.1  11 LIPSLLAADSSkskaKPCT-IHSPNTGSYFDLTTIQAQAPSSKSKDaRTESWHsrgydyGANFTLNFCAPVLED--LEDVEGIPD-RRAANISAFYKKE 105
                 5555555544444557788.7766677769999997744333333312222223455567899*****998877..344455555.6666688888874 PP

       ATG27  92 ekde...itqvipi......ggksldpkvtrlkesd........................ekeglrlelkggky...............gkkkqkaiie 142
                 +k                  +g++l  ++t+ +  +                        +                            +k++ ++ii+
  KKY13931.1 106 GKVYsigE-----AntepifRGRKLVLNYTNGSPCEdyetaslsprgifddddddddedeD------------DddhlnkwkssydsaaSKRTKSTIIS 187
                 43223331.....133344756666666666555552222223333455555555554441............044444445555677799******** PP

       ATG27 143 flCd.....ekslkfksydeee......eeekdvlrlewktkyACekaekdkkdsskkkeksgwGfFtwl 201
                 flCd     +       +           ++++ +++e+++++AC +a +++++s +     g+ fF +l
  KKY13931.1 188 FLCDrdpqyT------DH---PqisfigTTDSCSYHFEVRSRAACGGAPSQSPSSLG----PGGVFFVIL 244
                 ***7333331......22...122244456899*************99887776553....455555554 PP

>> RNase_H2_suC  Ribonuclease H2 non-catalytic subunit (Ylr154p-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.1e-06     0.011      40      94 ..      89     168 ..      24     199 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.1e-06
                   ...........................EEEEETTEEEEEEEEE--T..TEEEEEEECCTTS-EEESEEEEEEESS---S-SGG CS
  RNase_H2_suC  40 l..........................lraaFRGRqlvGqelsvpp..ayrgiilsttnppnkggldsddeqeeeddeegege 94 
                                               +  FRGR+lv ++ + +p   y+++ ls          d+dd++e+edd++  ++
    KKY13931.1  89 GipdrraanisafykkegkvysigeanTEPIFRGRKLVLNYTNGSPceDYETASLSPRGIFD---DDDDDDDEDEDDDDHLNK 168
                   044444444444444444444444444999*************9998899999999999555...345555555555554443 PP

>> Man-6-P_recep  Mannose-6-phosphate receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.091   2.3e+02      69     106 ..     100     136 ..      63     142 .. 0.74
   2 ?   -3.5   3.8       1.8   4.5e+03     233     251 ..     146     166 ..     135     169 .. 0.67
   3 !   12.4   0.0   2.4e-05     0.062     103     173 ..     171     244 ..     165     255 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.091
  Man-6-P_recep  69 qidkkdkketviGrinetqvldGsdWilliykggdeye 106
                       kk++k   iG+ n   ++ G +  +l+y +g++ e
     KKY13931.1 100 AFYKKEGKVYSIGEANTEPIFRGRKL-VLNYTNGSPCE 136
                    44578889999************986.58999997654 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.8
  Man-6-P_recep 233 rGv..gddqlgeeseerddhl 251
                    rG+  +dd  ++e e+ ddhl
     KKY13931.1 146 RGIfdDDDDDDDEDEDDDDHL 166
                    788323445566778888887 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 2.4e-05
  Man-6-P_recep 103 deyeshckkekrkalimisCnkkvladeltlvveerekeedcfylfeldssvaC....pkeesklsvGsillivl 173
                    ++y+s  +k  + ++i   C++++  ++   ++  +  ++ c y fe+ s++aC    ++++s+l  G ++ ++l
     KKY13931.1 171 SSYDSAASKRTKSTIISFLCDRDPQYTDHPQIS-FIGTTDSCSYHFEVRSRAACggapSQSPSSLGPGGVFFVIL 244
                    689*99****************98776655443.4678899*************443223445666677777665 PP

>> ANAPC9  Anaphase-promoting complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.28   7.2e+02      19      45 ..      44      70 ..      19     105 .. 0.78
   2 ?   10.8   1.5   0.00017      0.43      80     111 ..     148     187 ..     133     197 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.28
      ANAPC9 19 kekikeessskfvlrkpaklskYDysv 45
                 + + ++s+sk + +++ ++ +YDy  
  KKY13931.1 44 IQAQAPSSKSKDARTESWHSRGYDYGA 70
                455566667777888888999999975 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00017
      ANAPC9  80 iFdkddsdkevdededee........dsakeekekssliv 111
                 iFd+dd d++ ded+d++        dsa ++++ks++i 
  KKY13931.1 148 IFDDDDDDDDEDEDDDDHlnkwkssyDSAASKRTKSTIIS 187
                 9****99999999999998999999888888888887775 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.0   0.00028      0.72      64      95 ..     150     182 ..     136     183 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00028
     DUF4611  64 eeeegededdeeeekniknktksd.ePpaKrtK 95 
                 ++++++d++de+++ + ++ ++s    ++KrtK
  KKY13931.1 150 DDDDDDDDEDEDDDDHLNKWKSSYdSAASKRTK 182
                 456666677777777766655554378889999 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.9   0.00018      0.45      36      74 ..     150     188 ..     132     191 .. 0.45
   2 ?   -0.2   0.7      0.53   1.4e+03      23      45 ..     306     330 .]     291     330 .] 0.46

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00018
     PBP1_TM  36 ddeyddeedDdddddeeeevprk..gkkkkpprkkrrwlwl 74 
                 dd  dd+ dD+d+dd+++    k    +++++r k+  +++
  KKY13931.1 150 DD--DDDDDDEDEDDDDHLNKWKssYDSAASKRTKSTIISF 188
                 22..2222222222222222223212333444555555555 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.53
     PBP1_TM  23 kkasrrrrrdddydd....eyddeedD 45 
                 ++  r   rd+d ++    + d+e+dD
  KKY13931.1 306 GRGGR--GRDQDEENrlidQLDEEWDD 330
                 33333..34444344334355666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 1978.57
//
Query:       KKY13932.1  [L=503]
Description: putative c-14 sterol reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.1e-155  517.7   0.4   2.4e-155  517.5   0.4    1.0  1  ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
     0.0048   16.4   0.2       0.01   15.4   0.2    1.5  1  DUF1295     Protein of unknown function (DUF1295)


Domain annotation for each model (and alignments):
>> ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  517.5   0.4  2.7e-159  2.4e-155       3     432 .]      28     503 .]      26     503 .] 0.96

  Alignments for each domain:
  == domain 1  score: 517.5 bits;  conditional E-value: 2.7e-159
  ERG4_ERG24   3 ieyefggeigalgikiglp....vlelylnaiskfealklllpksldlaelkneikeldllvfegai.werklftvfllfyvlqavlylllpGkvveGl 96 
                   yefgg+ ga+g+++glp    + ++ +n++s+++ ++ll p ++++++lk+e  ++++      + ++  ++ +   ++ l +vl l+lpG+ veG+
  KKY13932.1  28 HGYEFGGPLGAFGVTFGLPilvyLSTFLCNDVSGCPVPSLLNPSTITFEKLKRETPWPEEGFAGL-FdFKVSAWVLA--YFGLLLVLQLILPGVEVEGV 123
                 569****************5554456789****************************99886666.55999999887..******************** PP

  ERG4_ERG24  97 eLsngkkLkYkinalas...lllvlaillvlqvtelfeltvlidnfvqlisvailfafalaivlYvrslkvkerkkd...kqlaaggvsGnliYDffiG 189
                 +L  g k kYk n++++   +l  + i + +q t+++ + ++ dn  q+i++  l +f la+++Yvrs+ v+++  +   ++la+gg sGn++YDffiG
  KKY13932.1 124 KLACGGKHKYKFNTFTTsllVLSSIGIGTAIQGTQFPLWPFIWDNLIQIITACNLISFGLAFWVYVRSFSVPHNGPNptnRELAPGGQSGNILYDFFIG 222
                 ****************95444445678899******************************************97766777******************* PP

  ERG4_ERG24 190 reLnPRlg...........slDlkmFlelRlgllllllinlaallkqyklygkvtdslllvllaqllYvfdgvkneeavlttmDittdgFGFmLaFgdl 277
                 reLnPR+            ++D+k ++elR+g+l+++++nla++++qy +yg+v+dsl+l++l q+lYv d++++e+a+ltt+D+ +dgFGFmLaFgdl
  KKY13932.1 223 RELNPRVDiprsipviggqTIDVKIWCELRPGMLGYIILNLAFCVRQYSTYGHVSDSLILITLFQALYVLDAMFMEPAILTTIDVIMDGFGFMLAFGDL 321
                 *******9999999999*99******************************************************************************* PP

  ERG4_ERG24 278 vlvPftYslqtlYLsvhPselgwstvlvailvvlligyyiFrsansqknnFRtnPedpklkllkyiqtktGskLlvsGWyglarkinYlgDwlqslsws 376
                 v+ Pf+Yslq++YL v P++lg  + +++il+v  +gy+iFrsan+ kn FRtnP+dpk+ +lkyi+t+tGs+L++sGW+g ar+inYlgDw++s+s+s
  KKY13932.1 322 VWLPFIYSLQARYLAVYPVDLGPIG-IAGILAVQGLGYFIFRSANNEKNRFRTNPNDPKVAHLKYIETRTGSRLITSGWWGRARHINYLGDWIMSWSYS 419
                 ************************7.9************************************************************************ PP

  ERG4_ERG24 377 Latgfq............................svlpyfyvlyFlvlLvhRelRDeekCkkkYGedweeYkkkvpykiipyvy 432
                 L+tg++                            ++ +yfy+lyF+vlL+hRe RDeekCkkkYG+dw++Y  +v+ +i+p++y
  KKY13932.1 420 LPTGIAgylihqtinpstgevsrvveqgpargwgMIATYFYILYFAVLLIHREGRDEEKCKKKYGKDWDRYTSIVRSRIVPGIY 503
                 **********************************************************************************98 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   1.1e-06      0.01     153     181 ..     391     420 ..     347     433 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-06
     DUF1295 153 gk.vldsGLwrysRHPNYfgealiWwglfl 181
                 g  +++sG w  +RH NY+g++++ w++ l
  KKY13932.1 391 GSrLITSGWWGRARHINYLGDWIMSWSYSL 420
                 44499*********************9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 2999.61
//
Query:       KKY13933.1  [L=258]
Description: putative a-agglutinin-like core protein aga1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2008  (0.111997); expected 358.6 (0.02)
Passed bias filter:                      652  (0.0363657); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 1831.24
//
Query:       KKY13934.1  [L=195]
Description: putative ubiquitin conjugating enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-40  137.0   0.0    4.3e-40  136.6   0.0    1.1  1  UQ_con     Ubiquitin-conjugating enzyme
    0.00027   20.6   0.0    0.00037   20.2   0.0    1.3  1  Prok-E2_B  Prokaryotic E2 family B
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.015   15.0   0.0    1.3  1  UFC1       Ubiquitin-fold modifier-conjugating enzyme 1
       0.12   12.7   0.8       0.17   12.2   0.7    1.5  1  RWD        RWD domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.6   0.0   9.5e-44   4.3e-40       1     128 [.      28     157 ..      28     169 .. 0.92

  Alignments for each domain:
  == domain 1  score: 136.6 bits;  conditional E-value: 9.5e-44
                 HHHHHHHHHHHSTTTT.EEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBE.TTSBB-CGGGSTTT--TTSHH CS
      UQ_con   1 rlqkelkelakkkpsg.isaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvd.ksGevcldiLkeekWspaltl 97 
                 rl +e+ke ++ +++  ++ ++v+de+lf+w++++kg +++ Yegg++ l+l++p++YP++pP+++fvt+i HPn++ ++Ge+cl +L +e+Wsp +tl
  KKY13934.1  28 RLLNEIKEYENAPNEAlLHLGPVSDEDLFQWEAVLKGVKGSAYEGGLWLLTLTIPPTYPHTPPTIHFVTPICHPNINfSTGEICLTLLTQEHWSPLYTL 126
                 67888888877776651678999999************************************************************************* PP

                 HHHHHHHHHHHHS--TTS-SSHHHHHHHHHT CS
      UQ_con  98 esvllsiqsLlaepnpesplnkeaakllkkd 128
                 +s l++iq+Ll++p p+spln+++akll++ 
  KKY13934.1 127 SSTLTAIQQLLTDPTPDSPLNVDIAKLLRDR 157
                 ***************************9976 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   8.2e-08   0.00037      34     111 ..      71     144 ..      20     161 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 8.2e-08
   Prok-E2_B  34 sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLClleeeldldewdpngsvadvleqlqqvLn.egisg 111
                 +gg   l+l +p+++p  pp +  + p      p in+ +g++Cl    l  + w p  ++   l+ +qq+L+  ++ +
  KKY13934.1  71 EGGLWLLTLTIPPTYPHTPPTIHFVTPI---CHPNINFSTGEICLT--LLTQEHWSPLYTLSSTLTAIQQLLTdPTPDS 144
                 6888889*********************...89************8..99999*******************9666555 PP

>> UFC1  Ubiquitin-fold modifier-conjugating enzyme 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   3.3e-06     0.015      76     122 ..      76     126 ..       3     154 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.3e-06
        UFC1  76 dlefdipvtypataleialpeldgktakmyrgGkiclt....ihfkplwak 122
                  l++ ip typ+t++ i++     + +  +  G+iclt    +h++pl++ 
  KKY13934.1  76 LLTLTIPPTYPHTPPTIHFVTPICHPNINFSTGEICLTlltqEHWSPLYTL 126
                 57899***************999*************973333588888765 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.7   3.8e-05      0.17      57      79 ..      77     120 ..      12     156 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.8e-05
                 EEEEE-SSTTSS--EEEEEECC.....................S CS
                 xxxxxxxxxxxxxxxxxxxxxx.....................x RF
         RWD  57 leiklpeeYPeeaPiislsste.....................n 79 
                 l+ + p++YP+++P i++ ++                      +
  KKY13934.1  77 LTLTIPPTYPHTPPTIHFVTPIchpninfstgeicltlltqehW 120
                 78999***********9998876665655555555544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 1229.49
//
Query:       KKY13935.1  [L=722]
Description: putative actin polymerization protein bzz1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-22   79.4   1.1    1.8e-13   50.1   0.0    2.4  2  SH3_9           Variant SH3 domain
    1.2e-21   76.8   0.1    1.2e-21   76.8   0.1    2.7  2  FCH             Fes/CIP4, and EFC/F-BAR homology domain
    2.2e-15   56.0   0.4    7.6e-07   28.6   0.0    2.5  2  SH3_1           SH3 domain
    8.1e-15   54.5   5.6    1.3e-14   53.8   5.6    1.3  1  C1_1            Phorbol esters/diacylglycerol binding domain 
    5.3e-05   23.4   0.2    0.00081   19.6   0.0    2.5  2  SH3_3           Bacterial SH3 domain
    0.00011   21.8   0.0        0.6    9.8   0.0    2.4  2  SH3_2           Variant SH3 domain
    0.00068   19.7   0.0        1.3    9.1   0.0    3.1  3  SH3_10          SH3 domain
     0.0007   19.9   4.0     0.0013   19.0   4.0    1.4  1  C1_2            C1 domain
  ------ inclusion threshold ------
       0.38   10.4  10.8        0.5   10.0   1.4    2.7  2  GrpE            GrpE
          2    8.4   5.3        5.2    7.1   5.3    1.6  1  OrfB_Zn_ribbon  Putative transposase DNA-binding domain
        2.6    7.8  19.6       0.11   12.3  11.9    2.3  2  FAM184          Family with sequence similarity 184, A and B


Domain annotation for each model (and alignments):
>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.2     1e-09   1.7e-06       2      49 .]     570     619 ..     570     619 .. 0.93
   2 !   50.1   0.0   1.1e-16   1.8e-13       1      49 []     671     720 ..     671     720 .. 0.97

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1e-09
       SH3_9   2 lypyepreddeLsLqrGDvitvi.eesedgWlegsl.tGrtGlvPanyve 49 
                 lypy++ ++ eL ++ G  +t++ +++ +gW+ ++   G  GlvPa+y+e
  KKY13935.1 570 LYPYQANDQGELTVDDGKEVTILePDDGSGWVKVRAgFGPEGLVPASYLE 619
                 7****************99999956677*******98***********97 PP

  == domain 2  score: 50.1 bits;  conditional E-value: 1.1e-16
       SH3_9   1 AlypyepreddeLsLqrGDvitvi.eesedgWlegsltGrtGlvPanyve 49 
                 A+y+y+++ d+e+s+ +GD++++i ++s dgW e++++G t+ vPanyv+
  KKY13935.1 671 AMYDYAAQTDAEFSMAEGDRFVLItDDSGDGWAEVEKGGVTKSVPANYVQ 720
                 8***********************78899********************7 PP

>> FCH  Fes/CIP4, and EFC/F-BAR homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.1   7.1e-25   1.2e-21       1      77 []      16     107 ..      16     107 .. 0.96
   2 ?   -0.4   1.4      0.87   1.4e+03      31      69 ..     135     196 ..     127     202 .. 0.61

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 7.1e-25
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT----TT.-...................HHHHHHHHHHHHHHHHHHHHHHH CS
         FCH   1 gfkvlqkrleqgialledlqeflkeRaeiEkeYakkLqkLakkylkrr.kkks..............eestlvtawtvlleeteklaqshla 77 
                 gfk+++ +++  i++l+dlq+f++eR+ iEkeY++kL++Lakky +++ kk s               es++ t++ ++l+ +e +a++h++
  KKY13935.1  16 GFKPVDGWVNENIQWLDDLQQFYRERSVIEKEYSAKLSALAKKYFEKKaKKSSilsvgntptrapgsLESASMTTFATQLSALETRAADHDK 107
                 89********************************************8866666*************************************85 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.87
                 HHHHHHHHHHCT----TT.-...........................HHHHHHHHHHHHHHH CS
         FCH  31 keYakkLqkLakkylkrr.kkks......................eestlvtawtvlleete 69 
                  eY  kLqk   ++++   k+k+                       ++  ++a++++++e++
  KKY13935.1 135 SEYNSKLQKERDSTYNDLrKTKAkydsvcqevenkrkktdssfdhGKAKAQAAYQQQMQEMN 196
                 68888888888888887555555555555555555555556665444444455666666665 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   4.6e-10   7.6e-07       3      48 .]     570     615 ..     568     615 .. 0.96
   2 !   25.2   0.1   5.6e-09   9.1e-06       2      38 ..     671     708 ..     670     715 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.6e-10
                 SSSBEXSSTTBXEBSTTEEEEEEEECSS.SEEEEEETTSTEEEEEEG CS
       SH3_1   3 lYDYeaeesdELsfkkGDviivleksed.gWwkgrlkgtgkeGliPs 48 
                 lY+Y+a++++EL+   G ++++le +++ gW+k+r    g eGl+P+
  KKY13935.1 570 LYPYQANDQGELTVDDGKEVTILEPDDGsGWVKVRAGF-GPEGLVPA 615
                 8***********************9999*********8.69*****6 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 5.6e-09
                 ESSSBEXSSTTBXEBSTTEEEEEEEECSS.SEEEEEET CS
       SH3_1   2 AlYDYeaeesdELsfkkGDviivleksed.gWwkgrlk 38 
                 A+YDY+a+++ E s+ +GD + ++ ++ + gW +++  
  KKY13935.1 671 AMYDYAAQTDAEFSMAEGDRFVLITDDSGdGWAEVEKG 708
                 9*******************9999888888***99976 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   5.6   7.9e-18   1.3e-14       1      51 [.     407     457 ..     407     459 .. 0.98

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 7.9e-18
                 --EEEE--SS--B-TTT-SB--SSSS-EEEETTT--EE-CCCCTTS-SBTT CS
        C1_1   1 HhwvhrnfkqptfCkhCgeflwgkekqglkCswCkllvHkkChekvpkecg 51 
                 H+++  +fk pt C+ Cge +wg++  g+ C++C++++H kC +kvp ec+
  KKY13935.1 407 HDFKSETFKIPTNCDLCGERIWGLSAKGFNCRDCGFTCHSKCEMKVPAECP 457
                 9*************************************************8 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0     5e-07   0.00081      18      55 .]     582     619 ..     582     619 .. 0.92
   2 ?    0.8   0.0      0.37   6.1e+02      22      44 ..     688     709 ..     682     719 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5e-07
       SH3_3  18 tlpyGekVevleetgggeWykvrtddgteGwvssgyls 55 
                 t++ G++V++le ++g +W+kvr   g eG v ++yl+
  KKY13935.1 582 TVDDGKEVTILEPDDGSGWVKVRAGFGPEGLVPASYLE 619
                 6889********888878******************96 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.37
       SH3_3  22 GekVevleetgggeWykvrtddg 44 
                 G+++ ++ ++ g++W  v + +g
  KKY13935.1 688 GDRFVLITDDSGDGWAEV-EKGG 709
                 555555444444448888.5444 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00041      0.67       8      56 ..     573     620 ..     567     621 .. 0.86
   2 !    9.8   0.0   0.00037       0.6       3      56 ..     670     721 ..     668     722 .] 0.83

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00041
                 B-SCGCCB--B-TTEEEEEE..EEEECT.TEEEEEE.CCCEEEEEGCGEEE CS
       SH3_2   8 yvgedkseLsfkkGdvikvlslgskdsd.gwwegev.gGrvGlfPsslvee 56 
                 y ++d +eL+   G  + +l   + d++ gw +++  +G  Gl+P s++e+
  KKY13935.1 573 YQANDQGELTVDDGKEVTIL---EPDDGsGWVKVRAgFGPEGLVPASYLEI 620
                 67888899999999999999...44555799***999***********986 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00037
                 EESS-B-SCGCCB--B-TTE.EEEEE..EEEECTTEEEEEECCCEEEEEGCGEEE CS
       SH3_2   3 raiedyvgedkseLsfkkGd.vikvlslgskdsdgwwegevgGrvGlfPsslvee 56 
                  a+ dy ++   e s  +Gd ++ ++   + + dgw e+e+gG+   +P ++v++
  KKY13935.1 670 EAMYDYAAQTDAEFSMAEGDrFVLIT---DDSGDGWAEVEKGGVTKSVPANYVQK 721
                 56778999999999999***555555...88899***********9999999997 PP

>> SH3_10  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1         3   4.9e+03      30      52 ..     326     348 ..     324     353 .. 0.76
   2 !    6.7   0.0    0.0046       7.5      23      63 ..     578     619 ..     549     620 .. 0.91
   3 !    9.1   0.0    0.0008       1.3      14      59 ..     668     716 ..     659     718 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3
      SH3_10  30 kgeevtLldnsdrekWkVqtssG 52 
                 kg+    ++nsd ++ +V++++ 
  KKY13935.1 326 KGQAKHAKSNSDTKRREVENIKK 348
                 6666677899*999999998875 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0046
      SH3_10  23 qaevsiekgeevtLldnsdrekW.kVqtssGaemtvPgvcll 63 
                 q e ++  g+evt+l+  d + W kV+   G e  vP+  l 
  KKY13935.1 578 QGELTVDDGKEVTILEPDDGSGWvKVRAGFGPEGLVPASYLE 619
                 6799*******************7799999*******97775 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0008
      SH3_10  14 aveALcdykqa...evsiekgeevtLldnsdrekWkVqtssGaemtvPg 59 
                  veA+ dy  +   e s+ +g++++L    +   W   +  G +++vP+
  KKY13935.1 668 YVEAMYDYAAQtdaEFSMAEGDRFVLITDDSGDGWAEVEKGGVTKSVPA 716
                 588888887554459***********9999999***************7 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   4.0   7.9e-07    0.0013      12      46 ..     411     448 ..     398     449 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 7.9e-07
        C1_2  12 gedssesfnCsaCgrkidgff...YsCseCdfslhvrC 46 
                 +e+ ++ +nC++Cg+ i g     ++C  C f+ h++C
  KKY13935.1 411 SETFKIPTNCDLCGERIWGLSakgFNCRDCGFTCHSKC 448
                 56778899********66666667************** PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   2.3     0.015        25      11      62 ..     135     186 ..     119     230 .. 0.76
   2 ?   10.0   1.4   0.00031       0.5      17      78 ..     318     379 ..     304     401 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.015
                 HHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHHH CS
        GrpE  11 edeeeeleeeleelekevkelkekllrllaefenlrkrtekekeeakkfaie 62 
                  + + +l++e ++  + +++ k k++   +e+en rk+t+  +++ k +a  
  KKY13935.1 135 SEYNSKLQKERDSTYNDLRKTKAKYDSVCQEVENKRKKTDSSFDHGKAKAQA 186
                 4556677777777778888888888888999999999888888766555544 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00031
                 CCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        GrpE  17 leeeleelekevkelkekllrllaefenlrkrtekekeeakkfaiekfakdLLpvlDnlera 78 
                 l++ l++ + ++k++k++ + ++ e+en++k  ++ k+   k   ++++++L  v + l+  
  KKY13935.1 318 LRNILAKSKGQAKHAKSNSDTKRREVENIKKVRQNIKDGKDKRDETEVVRALFAVSETLHAF 379
                 677799999**********************************************9988754 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.3    0.0032       5.2      30      57 ..     419     445 ..     417     448 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0032
  OrfB_Zn_ribbon  30 tCseCgsknkealsgrtfkCpnCgfead 57 
                     +C  Cg++    ls + f+C++Cgf+++
      KKY13935.1 419 NCDLCGERIWG-LSAKGFNCRDCGFTCH 445
                     79********9.**************99 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3  11.9   6.8e-05      0.11      32     179 ..      46     197 ..      35     205 .. 0.79
   2 ?   -1.3   0.9      0.93   1.5e+03      32      52 ..     347     366 ..     318     394 .. 0.46

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.8e-05
      FAM184  32 aetrekilqykskveeeldlkqkiaeleesleqh.ekekrqalaefeqykrrveerelkleaeh.sqkvvelsreveevkrkFeeklrqfaqlqeqleq 128
                 +e ++k+ ++ +k  e++  k  i ++ ++      +    +++ f ++    e r ++++ ++ ++ +++ ++ ++   +kFee  ++ ++ +++l++
  KKY13935.1  46 KEYSAKLSALAKKYFEKKAKKSSILSVGNTPTRApGSLESASMTTFATQLSALETR-AADHDKFgNDLITHVATPLQYSMNKFEELRKSHSEYNSKLQK 143
                 67778888888888888888888887777655541455556677787666666655.555566615668899*************************** PP

      FAM184 129 ekeka...LeelrkkhreeveeLlkeqeaqsekllkeqekleekhkaeveklke 179
                 e+ +    L + ++k+    +e+++++++  +++ ++++k++ +++++++++++
  KKY13935.1 144 ERDSTyndLRKTKAKYDSVCQEVENKRKKTDSSFDHGKAKAQAAYQQQMQEMNN 197
                 ***9955566666789999******************************99985 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.93
      FAM184  32 aetrekilqykskveeeldlk 52 
                 +  r+ i+  k k  +e++  
  KKY13935.1 347 KKVRQNIKDGKDK-RDETEVV 366
                 1122222222222.2233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1864  (0.103966); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 4563.27
//
Query:       KKY13942.1  [L=298]
Description: putative glycerol dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-46  157.0   0.0    3.2e-44  151.3   0.0    2.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.3   0.0   1.8e-48   3.2e-44       3     292 ..      23     276 ..      21     278 .. 0.92

  Alignments for each domain:
  == domain 1  score: 151.3 bits;  conditional E-value: 1.8e-48
                   EEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT- CS
  Aldo_ket_red   3 glGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLgt 99 
                   glGtwq       +++e+ +++++al aG++++DtA +Y    +e ++G  + +s+++r e+ ++tK+        ++  +++++e ++ slk L+t
    KKY13942.1  23 GLGTWQ------SKPNEVRAAVKAALLAGYRHIDTALAY---GNEAEVGDGIIDSGVPRSEIWLTTKL--------DNPWHKRVTEGIDSSLKDLKT 102
                   566663......4589***********************...9*********999*************........8888999************** PP

                   S-EEEEEE-S--TTS-...........HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH..HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT- CS
  Aldo_ket_red 100 dyvDllllHrpdpslp..........sieevldaleelvkeGkiraiGvSnfsveqleka..kkkkkvkivavqveynllreleeegllelckkkgv 184
                   dyvDl+l+H+p +++p          + +++++ +++l   Gk+r+iGvSnf +  lek+  + + k+ ++++q+e ++     + +l+ + + kg+
    KKY13942.1 103 DYVDLYLMHWPSSTDPsdlkkhypdwNFLDTWREMQKLPATGKVRNIGVSNFGITNLEKLlnHPDTKIIPAVNQIELHPN--NPSPKLVAYNASKGI 197
                   ************************************************************55555555589999999999..*************** PP

                   EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG--- CS
  Aldo_ket_red 185 pliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelkl 281
                      ays+lg+       ++++                    l ++e l+++a+++gv+++q+ l + l  + + +vip++ + +++++n++   l+l
    KKY13942.1 198 HSTAYSCLGS-------TDSP--------------------LYKNESLKKIAESKGVTVQQVLLVWGL--KHGFSVIPKSVTESRIQANFQIDGLDL 265
                   *********3.......2222....................35689**********************..999************************ PP

                   -HHHHHHHHHH CS
  Aldo_ket_red 282 seeevaeldel 292
                   ++ee++++d+l
    KKY13942.1 266 TDEEMKKIDSL 276
                   *********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2132.40
//
Query:       KKY13943.1  [L=232]
Description: putative nefa-interacting nuclear protein nip30 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-33  114.3  12.4    3.1e-33  114.3  12.4    2.2  2  Nefa_Nip30_N   N-terminal domain of NEFA-interacting nuclear 
  ------ inclusion threshold ------
       0.13   11.8  17.8       0.16   11.6  17.8    1.1  1  DUF572         Family of unknown function (DUF572)
       0.18   11.6   0.3       0.44   10.4   0.3    1.6  1  ComC           COMC family
        8.6    5.1  10.3        4.6    6.0   8.3    1.3  1  Paramyxo_ncap  Paramyxovirus nucleocapsid protein


Domain annotation for each model (and alignments):
>> Nefa_Nip30_N  N-terminal domain of NEFA-interacting nuclear protein NIP30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3  12.4   6.9e-37   3.1e-33       1     105 []       5     109 ..       5     109 .. 0.95
   2 ?   -1.3   1.6      0.62   2.8e+03      13      20 ..     136     143 ..     110     163 .. 0.51

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 6.9e-37
  Nefa_Nip30_N   1 Fvseseleeereerqeewekarkeleaerkk.eeaeeeedgksLyerLqenkaaKqeefeeklklknqfraLdedEveFLdeveekkreeeerrkke 96 
                   Fvse+ + ee++ r+++w k++++lea+r++  e+ ++e+gksLye+Lq+nkaaKqe+fee+++lknqfr LdedEveFLd+v e++r++e++++ke
    KKY13943.1   5 FVSEGGA-EESAPRDNAWLKVQRDLEAKRAQkIEQGKQEGGKSLYEVLQQNKAAKQEAFEESTRLKNQFRTLDEDEVEFLDSVLESTRAQEAAVRKE 100
                   9****99.7778899**************9966666669********************************************************** PP

  Nefa_Nip30_N  97 eeeeleeFr 105
                   ++e+le+Fr
    KKY13943.1 101 TREQLEAFR 109
                   ********8 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.62
  Nefa_Nip30_N  13 erqeewek 20 
                   + qe+w +
    KKY13943.1 136 ASQEQWSA 143
                   11222222 PP

>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  17.8   3.6e-05      0.16     169     332 .]      46     228 ..      13     228 .. 0.39

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.6e-05
      DUF572 169 elrkefreekkereeeeedeealkekislekikllpedeedekkaklle.gkte............slfasseesaksakkkptkk......esskekk 248
                 +l++  +++k +++e+ e++  lk+++     + l+ede  e  ++ le ++ +            ++f++++e+a++a+ + + +      +++ +++
  KKY13943.1  46 SLYEVLQQNKAAKQEAFEESTRLKNQF-----RTLDEDE-VEFLDSVLEsTRAQeaavrketreqlEAFRKQQEAAEKAALEVE-DasireqQITLKAS 137
                 333344444444444444444455444.....3332222.11122222211111122222222334334433333333322222.12233323333333 PP

      DUF572 249 keslekklskltkkkad...sslvvrKkkkeeekskeskek.teeeskeseeeskkeeetsaeeekee..........kakkkssslsllvaysdsdd 332
                 +e+++ + +   k+++d   ++l++ +k ++++++++++   ++++ k+s++++++  ++s      +          + +k s++   l++y+++dd
  KKY13943.1 138 QEQWSARKR---KRDTDkgvNGLLKLRKMSSSNSENTEAAVaSSTTGKQSSTAKAPVVTSSVS----KgtpavevdtvEPTKPSAVALGLGDYDSDDD 228
                 333333333...333334445555555555533333322220222222222333332222222....12344778887555555566667***99997 PP

>> ComC  COMC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   9.8e-05      0.44       5      18 ..      67      80 ..      64      82 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 9.8e-05
                XXXXXXXXXXXXXX CS
        ComC  5 qklnqFeeLktkeL 18
                 ++nqF +L+++e 
  KKY13943.1 67 RLKNQFRTLDEDEV 80
                689*********95 PP

>> Paramyxo_ncap  Paramyxovirus nucleocapsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   8.3     0.001       4.6     416     515 ..      79     177 ..      69     184 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.001
  Paramyxo_ncap 416 qvsflrsdrseeeqkraskkeekrekqsrkearesskedkkkeatdeeaaslsketlldvdttsesdedpleskksaeallklralakiledseae 511
                    +v fl s  +++  ++a+ ++e+re+    + +++  ++k + + ++ + ++++ tl   +++  + +  +++ k +++llklr++++  +++++ 
     KKY13943.1  79 EVEFLDSVLESTRAQEAAVRKETREQLEAFR-KQQEAAEKAALEVEDASIREQQITLKASQEQWSARKRKRDTDKGVNGLLKLRKMSSSNSENTEA 173
                    5778888777777777777777766555544.444555666666777777777788888888888888889999************9888777766 PP

  Paramyxo_ncap 512 edss 515
                      +s
     KKY13943.1 174 AVAS 177
                    5554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2408  (0.134308); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 1528.92
//
Query:       KKY13944.1  [L=909]
Description: hypothetical protein UCRPC4_g06888 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (909 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 6059.35
//
Query:       KKY13945.1  [L=257]
Description: hypothetical protein UCRPC4_g06889 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-10   41.5   0.0      3e-10   40.2   0.0    1.7  2  Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
    8.8e-05   23.0   0.0    0.00021   21.8   0.0    1.6  1  DUF2407      DUF2407 ubiquitin-like domain
     0.0022   17.7   0.0     0.0039   16.9   0.0    1.4  1  ubiquitin    Ubiquitin family


Domain annotation for each model (and alignments):
>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.73   4.4e+03       4      22 ..     126     143 ..     124     154 .. 0.83
   2 !   40.2   0.0   5.1e-14     3e-10      22      99 ..     159     232 ..     145     255 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.73
                  EEEEEETTS-EEEEEEEET CS
  Rad60-SLD_2   4 elkfrlvdGsDigpvkfsd 22 
                   + ++l++G+  +p+k+++
   KKY13945.1 126 MITLLLTNGA-RHPFKLDQ 143
                  6788999999.99999987 PP

  == domain 2  score: 40.2 bits;  conditional E-value: 5.1e-14
                  TT-BHHHHHHHHHHHS-TT-SSS--SCCCEEEEETTEEE-TTSBCCCCS-TTTTTTTS-EEEEEEE---SS----.XX CS
  Rad60-SLD_2  22 daatvaelkekviaqWPkdkeekpksvndlklilaGkiLennktlkelrlplgevkggvtvmHvvvrenlsekksekk 99 
                  ++ +v +lke ++++W +++e+kp+s+ +++li+ Gk+L++   l ++++          v+H+ ++++    ++++k
   KKY13945.1 159 SNLSVYTLKELILREWREEWEQKPSSPSSIRLISFGKLLDDKAPLRDSKFSPDSP----NVVHMTIKPQELIDEEDAK 232
                  4889********************************************8865444....7888888776655554444 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   3.5e-08   0.00021      14      72 ..     151     222 ..     144     250 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 3.5e-08
     DUF2407  14 leLdipdpntttvagLkqliRerl.....paelasrrLrLIyaGrlLedttslasslklpees........v 72 
                 ++++ +dp++++v  Lk+li  +      ++  + + +rLI  G+lL+d+++l++s   p ++         
  KKY13945.1 151 VKVQDNDPSNLSVYTLKELILREWreeweQKPSSPSSIRLISFGKLLDDKAPLRDSKFSPDSPnvvhmtikP 222
                 5666679*************87775666656667789*******************9999766665555541 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   6.6e-07    0.0039      18      71 ..     160     222 ..     150     223 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.6e-07
                 TSBHHHHHHHHHHHHT.......SSGGGEEEEETTEEE-TTSBHGGHTTSTT..EEEEEEESS CS
   ubiquitin  18 sdtveelKekiaekeg.......ipaeqqrLiysGkvLedertleeygiqdg..stlhlvlrl 71 
                 + +v +lKe i ++ +         ++++rLi  Gk+L+d+ +l++ +  ++  +++h+ +++
  KKY13945.1 160 NLSVYTLKELILREWReeweqkpSSPSSIRLISFGKLLDDKAPLRDSKFSPDspNVVHMTIKP 222
                 5678888888865543346667799*************************9977799999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1917.80
//
Query:       KKY13946.1  [L=321]
Description: putative phosphomevalonate kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-16   58.4   5.4    2.1e-15   56.7   4.6    2.2  2  GHMP_kinases_N  GHMP kinases N terminal domain
    4.2e-09   36.6   0.0    1.6e-08   34.8   0.0    2.0  1  GHMP_kinases_C  GHMP kinases C terminal


Domain annotation for each model (and alignments):
>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   4.6   2.3e-19   2.1e-15      10      66 .]      23      86 ..      18      86 .. 0.89
   2 ?   -1.2   0.0      0.28   2.5e+03      36      50 ..     119     134 ..     109     139 .. 0.73

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 2.3e-19
                    TTSSSCHHHHHHHHHHHHHHHHTTEHH...HH....HHHHHHHHHHHHHHHHHSHHHHHHHHSS CS
  GHMP_kinases_N 10 vgaGLGSSAAlavalvaAllallglsl...ee....aklaleaerlaqggngsggDvaasvyGg 66
                    +++GLGSSAAl++a + Alla+l +++   ++    ++la+ a+++aqg++gsg+Dvaa+v+G+
      KKY13946.1 23 HKTGLGSSAALVTAFTSALLAALAKDFdiaKDrsriHNLAQAAHCAAQGKVGSGFDVAAAVFGS 86
                    799********************8774345447889**************************95 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.28
                     H.HHHHHHHHHHHHHH CS
  GHMP_kinases_N  36 l.eeaklaleaerlaq 50 
                     l e+a++ +e e+ ++
      KKY13946.1 119 LlEDARWDQEVEKDVV 134
                     33779*******9775 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   1.8e-12   1.6e-08      10      79 ..     210     274 ..     205     280 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.8e-12
  GHMP_kinases_C  10 lellgellnlsqrselkavvgilppeleelleal.selGalgaklsGaGgGptvfalfkdkdeaeqvaral 79 
                     +e+++  ++++ +   k +v+i+p +++ell+ + s +G++ ++++GaGg+++++ l++++de   v+++l
      KKY13946.1 210 IETIRSFVREMSE---KSQVPIEPKVQTELLDTCaSLPGVINGVVPGAGGYDAIALLVENDDE---VVQKL 274
                     5788999999999...99****************99999*******************99999...65555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      622  (0.0346924); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 1928.40
//
Query:       KKY13947.1  [L=364]
Description: putative alpha beta hydrolase fold protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-31  109.3   0.2    2.3e-29  102.8   0.2    2.1  1  Abhydrolase_3    alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.016   14.1   0.0      0.058   12.3   0.0    1.9  2  COesterase       Carboxylesterase family
      0.018   14.0   0.0      0.042   12.8   0.0    1.6  2  Chlorophyllase2  Chlorophyllase enzyme
      0.022   14.2   0.0      0.054   13.0   0.0    1.6  2  Peptidase_S9     Prolyl oligopeptidase family
      0.028   14.0   0.1       0.11   12.1   0.0    1.9  3  DLH              Dienelactone hydrolase family
       0.19   11.5   0.0       0.33   10.7   0.0    1.3  1  Abhydrolase_2    Phospholipase/Carboxylesterase


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.2   7.6e-33   2.3e-29       2     193 ..      93     298 ..      92     305 .. 0.81

  Alignments for each domain:
  == domain 1  score: 102.8 bits;  conditional E-value: 7.6e-33
                    EEE--STTTS--TTTT..................HHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEET CS
  Abhydrolase_3   2 vyfHGGGfvlgsldth..................dalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdS 79 
                    + +HGGGfv+g+  +                    ++cr la+e g  vvs dYr AP +pfP ++ed +++++ +++   ++ +d+++i+++G S
     KKY13947.1  93 IDIHGGGFVIGDTGQGlslarllatlgtnmtprdVEWCRYLANEHGFCVVSLDYRKAPSYPFPYQTEDLVEIVQEVLKD-NDMPVDKTKIAICGFS 187
                    5689999997665544444455555555566676789*****************************************9.5899************ PP

                    HHHHHHHHHHHHHHHTT---EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSS.GGGGGSTTTSGGGCS-SST--.-EEEEE CS
  Abhydrolase_3  80 aGGnlaaavalrardegepkvagqvliyPvtdlertesesikkaeeladgplltraaldlfwrlylp.eadrddplaspllaedlsglp.ptlvvv 173
                    aG++  +a+++ ++de + k+++++l+yPv+d++ + + +++ a++ + + ll  ++ ++f  +y+p ++dr+dpl+sp++a d s+lp +++ + 
     KKY13947.1 188 AGAK--HALSISQKDELQHKIKALLLWYPVVDFSGKYKGTFRPASDGSPDMLL--KTSEMFNYAYVPeGQDRRDPLLSPIYA-DRSKLPeKIFFIG 278
                    ***8..55666677777789*************66656666556555665665..788888999**88**************.7666764799*** PP

                    ETT-TTHHHHHHHHHHHHHT CS
  Abhydrolase_3 174 aefDplrdegeayaerlraa 193
                    ae+D+l +e+e  a+  + a
     KKY13947.1 279 AEYDVLCHEAEIAADLYANA 298
                    *********99888766554 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.9e-05     0.058      91     123 ..      76     107 ..      73     150 .. 0.62
   2 ?   -1.6   0.0      0.31   9.3e+02     183     203 ..     177     197 ..     176     217 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.9e-05
                 EEEEESSSSSTTSSEEEEEEE--STTTS-BGCG CS
  COesterase  91 nvytPkekkeakkklPVlVwihGggfqtgsase 123
                 +v+ P++  ++ ++lP l+ ihGggf++g+  +
  KKY13947.1  76 SVWLPESY-KSGQTLPLLIDIHGGGFVIGDTGQ 107
                 69***986.566666************766543 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.31
                 EEEEEEEEEETHHHHHHHHHH CS
  COesterase 183 dpervtlfGesAGaasvslll 203
                 d+ ++ + G sAGa  +   +
  KKY13947.1 177 DKTKIAICGFSAGAKHALSIS 197
                 788999*******98654444 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.1   3.2e+03       8      19 ..      58      69 ..      56      85 .. 0.77
   2 ?   12.8   0.0   1.4e-05     0.042      74     129 ..     162     217 ..     135     246 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.1
  Chlorophyllase2  8 vvaPteageYpv 19
                     v+ Pt + +Ypv
       KKY13947.1 58 VFRPTYTKTYPV 69
                     899********9 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.4e-05
  Chlorophyllase2  74 akgLesvlp.eevepdlsklalsgHSrGgktafalalgkaktslkfsaligvdPvag 129
                       + +++vl+ +++  d +k+a+ g S+G+k a+++  +  + + k++al+   Pv  
       KKY13947.1 162 VEIVQEVLKdNDMPVDKTKIAICGFSAGAKHALSISQKD-ELQHKIKALLLWYPVVD 217
                      45567788856677799****************997655.5599*******999865 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.4   4.3e+03       5      23 ..     129     147 ..     126     150 .. 0.83
   2 ?   13.0   0.0   1.8e-05     0.054      45     117 ..     158     232 ..     155     261 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.4
                   HHHHHHHCCT-EEEEE--T CS
  Peptidase_S9   5 selqlladrGyvvvvanir 23 
                   +  +l+++ G+ vv  ++r
    KKY13947.1 129 WCRYLANEHGFCVVSLDYR 147
                   7778889999999999988 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.8e-05
                   HHHHHHHHHHHHHTT..S--GGGEEEEEETHHHHHHHHHHH..H-GGG-SEEEEESE---CCCHHCSTTSTHHHCCC CS
  Peptidase_S9  45 fdDfiaaaealakeg..yvdserlaitGgSyGGyltgaaln..qrpdlFkaavaevpvvdvlrydsdtdllteeyme 117
                    +D++++++++ k +   vd++++ai G S+G   ++ +    + +++ ka++  +pvvd    ++ t  + +  ++
    KKY13947.1 158 TEDLVEIVQEVLKDNdmPVDKTKIAICGFSAGAKHALSISQkdELQHKIKALLLWYPVVDFSGKYKGT--FRPASDG 232
                   689*****9998888789******************99999444567789999999999999999987..6664444 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.6e-05      0.11      79     130 ..     162     214 ..     154     240 .. 0.80
   2 ?   -2.6   0.1       1.1   3.4e+03     177     188 ..     290     301 ..     284     326 .. 0.68
   3 ?   -2.4   0.1      0.99     3e+03     184     203 ..     323     343 ..     319     358 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.6e-05
         DLH  79 lddlkaavaylksvpevstkkvgvvGfCmGGalalllaaev...pevdaavafYG 130
                 ++++ ++v + + +p v++ k++++Gf  G++ al +++++    +++a + +Y+
  KKY13947.1 162 VEIV-QEVLKDNDMP-VDKTKIAICGFSAGAKHALSISQKDelqHKIKALLLWYP 214
                 5555.5566667788.999*******************99844457899999999 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.1
         DLH 177 lelkvYpgagHa 188
                 ++ ++Y++a Ha
  KKY13947.1 290 IAADLYANAEHA 301
                 555677788777 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.99
         DLH 184 gagHaFandsre.syneeaae 203
                 +a+H+F+  +++ ++ +ea++
  KKY13947.1 323 DAQHGFNFVRKRwNAAAEAKR 343
                 588998765554344444443 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00011      0.33      87     125 ..     158     199 ..     139     219 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
                    HHHHHHHHHHHHHTT...--GGGEEEEEETHHHHHHHHHHHT CS
  Abhydrolase_2  87 aekleelidaelkkg...ipssriiigGFSqGaalalylalt 125
                    +e l e++++ lk     +++ +i+i GFS Ga  al  + +
     KKY13947.1 158 TEDLVEIVQEVLKDNdmpVDKTKIAICGFSAGAKHALSISQK 199
                    566667777777766777***************888866554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.33s 00:00:00.90 Elapsed: 00:00:00.55
# Mc/sec: 2002.21
//
Query:       KKY13968.1  [L=559]
Description: putative carboxylesterase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-96  323.1   0.0    4.2e-96  322.8   0.0    1.0  1  COesterase     Carboxylesterase family
    5.2e-08   33.0   0.7    1.5e-07   31.5   0.3    2.0  2  Abhydrolase_3  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.8   0.0  4.7e-100   4.2e-96       3     486 ..      18     509 ..      16     549 .. 0.92

  Alignments for each domain:
  == domain 1  score: 322.8 bits;  conditional E-value: 4.7e-100
                 SEEEETTEEEEEEEEEESTCS..EEEEEEEEESSB---GGGTTS--BE----SSEEECBS---BESEECSSSSSCGHHCHHHBES---EEEEEEESSSS CS
  COesterase   3 pvvetslGkvrGkrvklksek..evdaFlGiPYAepPvgelRFkkPepaepwtgvrdAtkfspaCpqnaeksekeekeleawvsEDCLyLnvytPkekk 99 
                 p v++ +G++ G++ +        v+aFlGiPYA pP gelR+++P+p    ++ +dA+k++p+Cp ++     +  ++    sEDCL++nv+  + ++
  KKY13968.1  18 PKVTIAQGTLIGTNINDGT-FpaYVEAFLGIPYALPPQGELRYARPVPVPASNQSIDASKYGPRCPGKQLLRVGDGPDH---YSEDCLTVNVFRQRGSA 112
                 89*************9444.3599******************************************9998777766665...9***********99999 PP

                 STTSSEEEEEEE--STTTS-BGCGS-THHHHHHH..TSEEEEE----HHHHH-B-..SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETH CS
  COesterase 100 eakkklPVlVwihGggfqtgsaseydgsaLaaeg..nvivVtinYRlGvlGFlst..gdeeapGNvGllDqvlALrWVkenIasFGGdpervtlfGesA 194
                 +   kl+V V++hGg+f  g+a++++  +++a      + +++nYR+G+lGFl      +e   NvGl Dqvl L+WVken+a+FGGdp++v ++G sA
  KKY13968.1 113 SDGAKLSVAVYMHGGAFNRGTAKMHNTASMVAWSaePFVAISFNYRIGALGFLNSavTAKENLLNVGLRDQVLLLQWVKENVAAFGGDPNNVAIIGLSA 211
                 999*********************9999998766569****************99766689999*********************************** PP

                 HHHHHHHHHHSGGGT.TSBSEEEEES--TTSTTTSBSH...HHHHHHHHHHHTTS-CSSHHHHHHHHHCS-HHHHHHCCGG.SSSSSSTTC-SSS-B-- CS
  COesterase 195 Gaasvsllllsplsr.glfkraIlqSGsalspwaiqkk...arkrakklakkvgckassskelveclrsksaeelldaqek.aleasssklvsfaPvvd 288
                 Ga s+  +++   s+ +lf++a+++SG ++s +++ ++    ++++ +l ++vgc++ s++e+++clrs + ee+++   + + +++ s + +++Pv+d
  KKY13968.1 212 GAHSIGHHIMNINSKeQLFHKAVMESGGPTSRAVHPYDselHKEQFHQLLSEVGCDEVSQNEVLQCLRSVPSEEIIAGSDTvFGKWNPSVRWAWQPVID 310
                 ***********666669***************99998888999*********************************9998878899999********** PP

                 SSSSSS-HHHHHHCGC..CSEEEEEEETTTTHHHHCCHSTTTSSSSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSTTTSSTCHHHHHHHHHHHH CS
  COesterase 289 gdflpekPeellkseg..kvplliGvnkdegllflaylldkeksvkkkeeklsesllkdelyleaekkeelseaikeeytdeadrddaeksrkallell 385
                 +d+++++P+e  +s    kvp+l+G+n++eg++ + +++++ ++ ++ + +l  +l+k++l + ++   + s    + y+ e  + +    +k++++++
  KKY13968.1 311 DDLISRRPLEGWNSGRwnKVPILTGFNHNEGTMYVPKKMSQSNEFNDFFATLLPQLSKEDLKQLTQLYPDPSTHNDSPYV-ETRNISVGLQYKRVEAAY 408
                 **************66*************************999999999999999999999998889999999999999.77777778888999**** PP

                 HHHHTHHHHHHHHHHHH..HTT-SEEEEEEE--STTSSSTTTGSSBTTTTHHHHTTGGGTSGCSS-HHHHHHHHHHHHHHHHHHHHSSTTS.....TTS CS
  COesterase 386 tdvlfkapvlrtaklha..srgspvYlYsfdyrnssskkpkwmgvvhgdeleyvfglpllekeeftkedeklsrkmmtywtnFaktgnPnk.....eee 477
                 +++ +++pv++ta l +  ++  p+YlY+   +          g+ hgd ++y   +p +++   +  + +l+  +  y+t+F+ +gnPn       ++
  KKY13968.1 409 GQYAYVCPVRQTALLGSasQNDPPIYLYHWAVNR-----TVEGGANHGDQMYYETMNPDVRNI--SPTQAELAGFFHAYVTSFIVSGNPNTvlgrfGQR 500
                 ************998774355555******9988.....56789***********99999887..677999************************999* PP

                 S----B.TT CS
  COesterase 478 ekWpkytke 486
                 ++W++++++
  KKY13968.1 501 PEWKAFDNS 509
                 *****9544 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.3   1.7e-11   1.5e-07       2      94 ..     122     225 ..     121     263 .. 0.80
   2 ?   -3.4   0.0      0.81   7.2e+03     130     156 ..     364     391 ..     345     419 .. 0.69

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 1.7e-11
                    EEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---...........TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHH CS
  Abhydrolase_3   2 vyfHGGGfvlgsldthdalcrelakelgavvvsvdYrl...........APehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaa 86 
                    vy+HGG+f  g++++h++      ++   v++s +Yr            A e+ +   + d +  l+w++e+ +++g dp+++++ G SaG++   
     KKY13968.1 122 VYMHGGAFNRGTAKMHNTASMVAWSAEPFVAISFNYRIgalgflnsavtAKENLLNVGLRDQVLLLQWVKENVAAFGGDPNNVAIIGLSAGAHSIG 217
                    9***************888877778889*********64444444444478999******************99******************8554 PP

                    HHHHHHHH CS
  Abhydrolase_3  87 avalrard 94 
                    +  + + +
     KKY13968.1 218 HHIMNINS 225
                    44444444 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.81
                    SSSCHHHHHHHHHHHS.SGGGGGSTTTS CS
  Abhydrolase_3 130 plltraaldlfwrlyl.peadrddplas 156
                    p l++++l+++++ly  p  + d+p+++
     KKY13968.1 364 PQLSKEDLKQLTQLYPdPSTHNDSPYVE 391
                    4466778888888887447777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 3465.11
//
Query:       KKY13969.1  [L=1095]
Description: putative nrps-like enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-28   98.9   0.0    4.7e-28   98.1   0.0    1.4  1  NAD_binding_4    Male sterility protein
    2.4e-15   56.1   0.0    9.5e-14   50.8   0.0    2.2  2  AMP-binding      AMP-binding enzyme
    1.2e-06   28.2   0.0    2.3e-06   27.3   0.0    1.5  1  Epimerase        NAD dependent epimerase/dehydratase family
    2.5e-06   27.7   0.1    6.5e-06   26.4   0.1    1.7  1  PP-binding       Phosphopantetheine attachment site
    5.9e-05   22.6   0.0    9.9e-05   21.9   0.0    1.3  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
     0.0046   17.7   0.0      0.016   15.9   0.0    1.9  2  DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomer
  ------ inclusion threshold ------
      0.044   14.8   0.1         18    6.4   0.0    3.6  4  AMP-binding_C    AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.0   1.8e-31   4.7e-28       1     256 [.     646     903 ..     646     904 .. 0.87

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 1.8e-31
                    EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE-- CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpev.kiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdviihsa 95 
                    lTG+TG +G+++l  LL t + + ++y+l Ra+++  ++  + +  +  +l+ ++    ++r++++++Dls+++l L+ + +++l  +v++i+h+a
     KKY13969.1 646 LTGSTGAIGCYILSILLATPD-IfHVYCLNRASNS--MALQI-QRSQARGLPTEFP---SDRVTFLTADLSQNNLNLEWQVYERLRCSVTHIVHNA 734
                    8****************9975.88*********77..55556.5668899999997...************************************* PP

                    SS-S.STTSSEEHHHHHHHHHHHHHHHT.....SSS--.-EEEEEE.GGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHH CS
  NAD_binding_4  96 AtvnfdepykellrvNveGtrevlelak.....klkklkvllhvST.ayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEk 185
                      vnf+ +++++ ++ ++G+ ++++la+     ++++   +l+vS+ + v+g+               +++ ++   + ++ lp +Y qsK++aE+
     KKY13969.1 735 WPVNFNLSLSTF-APHLMGVCNLIKLAAeagstTTSNSCNFLFVSSvSSVAGAAVVG-----------KQIPEKIITDPHAPLPMGYGQSKYIAER 818
                    *********986.688************777764555579*****997777777733...........346789999******************* PP

                    HHHHHHHHH---E..............EEEEE-EEE-.-SSST---TTSHHHHHHHHHHHH-EEES-SB---TT.--EEEHHHHHHH CS
  NAD_binding_4 186 lvrearrrsglpv..............vivRpsiitg.esktGwingsdlgirgllgliakgvlpeilgdkeav.ldlvpvDyvana 256
                    ++  a+    +p+              +i+R++ + g    +G+ n+ ++ +++++++   g +p+ lg   +  +d+vp+D++a+ 
     KKY13969.1 819 ILDYAS--RAIPTfrhngddatsssniAILRVGQVAGpAYAPGSWNKWEWFPSLVISSLYLGLIPDSLGGGTNDiIDWVPIDVLAES 903
                    ******..5799555555555555555**********77888*************************99865545********9975 PP

>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   3.7e-17   9.5e-14      16     232 ..      34     247 ..      19     277 .. 0.70
   2 ?    3.0   0.0     0.012        32     389     421 ..     324     360 ..     314     361 .. 0.72

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 3.7e-17
                  E.......CCSTEEEEHHHHHHHHHHHHHHHH.HTTS.STT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTC CS
  AMP-binding  16 d.......sgegqtlTYreldervnrlAagLr.slGv.kkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvds 104
                  +       +++ q++T+++l ++vn lA +L  ++G  k+ ++   + p  +++ +++l+++kaG  v   +p+ + ++   +++  +++ +i  + s
   KKY13969.1  34 YpisptgyDKGFQKITFADLANAVNGLAWWLHdAIGPgKNFETLTYIGPLDLRYNALILGAVKAGYKVLLASPRNSLPAHINLFNLLNCQKII--TPS 129
                  344455556789********************776774444568899999*******************************************..544 PP

                  CCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSCCTT. CS
  AMP-binding 105 elleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfklke. 201
                  +  +++  + ++     + i++ + +  +e  +k+ ++ +      ++  e  ++d+++++ TSGTTG PK ++ +h+ +++ +++++le++  + + 
   KKY13969.1 130 QRPQAVTTIVES-----HSIQTLEIPTVEELLSKSYTHYAY----SKTF-EEAKKDPLVVLHTSGTTGLPKPIIWTHEFAASWLQWVNLEDCAAVVPl 217
                  433333333332.....222222222222222333333332....2233.66899**********************999888888777766443233 PP

                  T-EEEESS-TTSCHHHHHHHHHHHHTT-EEE CS
  AMP-binding 202 ddvvlsilplahifglilelllallsGatvv 232
                    + l+  pl  ++  + +l ++++sG+tv+
   KKY13969.1 218 VLEELCKKPLLLDVL-SQNLPTMFYSGGTVG 247
                  333367777777776.367777777777765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.012
                  EEE..TCCEEEEEEEEEEETT..SEEEEEEECCCEEE CS
  AMP-binding 389 fds..egrwlrTGDlgrlded..GyleivgRkkdlik 421
                  f+   e+  +rTGDl + ++      ++ gR +d+i+
   KKY13969.1 324 FKVfpEKTEYRTGDLYTPHPSspDLWRYRGRDDDIIV 360
                  443324447********8864347999********97 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0     9e-10   2.3e-06       1     175 [.     644     854 ..     644     905 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 9e-10
                 EEEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHC.............EEEE--TT-HH.HHHHHHHHH...T-SEEEE--S---HHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg..yevigldrlssasntarledl.............elveldltdrs.alerlfkee...qpdavihlAavggvaas 80 
                 +l+tG tG iG +++  ll+     +v +l+r s++ + + ++               ++ ++dl +++ +le  + e     +++++       ++++
  KKY13969.1 644 VLLTGSTGAIGCYILSILLATPdiFHVYCLNRASNSMALQIQRSQarglptefpsdrvTFLTADLSQNNlNLEWQVYERlrcSVTHIV----HNAWPVN 738
                 699*****************999777999999999999888887799*******************9996333222222111444444....5599*** PP

                 HHSHHHHHHHHTHHHHHHHHHHHHHTCT......EEEEEEE.GGGGTSCSS..SSBSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT........ CS
   Epimerase  81 sedpadfieknlqgtlnlleaarkagvk......rllflsS.sevYGkdae..qpkeettltgpl.kpnspYaaaKlageklveayaaqyg........ 161
                 ++    ++  +l+g+ nl++ a +ag        ++lf+sS s+v G+     q   e++ t+p  +    Y+ +K+ +e+++ ++ ++          
  KKY13969.1 739 FNLSLSTFAPHLMGVCNLIKLAAEAGSTttsnscNFLFVSSvSSVAGAAVVgkQ-IPEKIITDPHaPLPMGYGQSKYIAERILDYASRAIPtfrhngdd 836
                 ***********************88777777888*******8888886655533.6677778888566789************9998876435555555 PP

                 ....-EEEEEEESEEEST CS
   Epimerase 162 ....lnaiilrlfnlyGp 175
                      n+ ilr+  + Gp
  KKY13969.1 837 atssSNIAILRVGQVAGP 854
                 555555555555555555 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.1   2.6e-09   6.5e-06      19      67 .]     523     572 ..     505     572 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 2.6e-09
  PP-binding  19 dpdtdlfdlGlDSllavellaaleeefgv.eiplsdlfehptlaelaayl 67 
                 d ++++f  G+DSl+a++l+++l++++ + +++ s+++++p++  l++++
  KKY13969.1 523 DKNENFFLSGMDSLQALQLTRQLKAALSLpDLDISTVYANPSIHLLTQAI 572
                 46899**********************988*************9888875 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.8e-08   9.9e-05       1     170 [.     645     826 ..     645     839 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 3.8e-08
                    EEETTTSHHHHHHHHHHHHCT-CCEE..EEEEESS-TTHHHH..HCTTT...TTGCCEEEEE--TT-.HHHHHHHHHHHT-SEEEE--S---HHHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhg..ivrrsssfntgrie..hlakdpkeeleenlklhkgDltD.ssslerllaevqpdevynLAAqshVdvs 91 
                    L TG +G iG y++  Ll+    +h+  + r s+s+ + +i+  + +  p e  ++++++  +Dl+  + +le  + e     v +     + +v 
     KKY13969.1 645 LLTGSTGAIGCYILSILLATPDIFHVycLNRASNSM-ALQIQrsQARGLPTEFPSDRVTFLTADLSQnNLNLEWQVYERLRCSVTHIV-HNAWPVN 738
                    78*****************97665551044444444.3444411334557777789*********86255777666555445577764.4567899 PP

                    TTSHHHHHHHHTHHHHHHHHHHHHCT.....TTSEEEEEEE.GGGG-S-SSSS.B-TTS-----SH....HHHHHHHHHHHHHHHHHH CS
  GDP_Man_Dehyd  92 fekPeytaevnvlGtlrLLeairalgle...kkvrfyqaSt.sEvYGkvqevp.qtEttpfyPrsP....YaaaKlyadwivvnyrea 170
                    f+ +  t+   ++G+ +L++++ ++g +   +++ f+++S+ s v G +   + + E+  ++P+ P    Y+ +K +a+ i     +a
     KKY13969.1 739 FNLSLSTFAPHLMGVCNLIKLAAEAGSTttsNSCNFLFVSSvSSVAGAAVVGKqIPEKIITDPHAPlpmgYGQSKYIAERILDYASRA 826
                    99999******************9986534479***99998799***99865515899999999888888********9998665555 PP

>> DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.9   9.9e+03      25      60 ..     554     589 ..     537     621 .. 0.65
   2 !   15.9   0.0   6.4e-06     0.016       2      43 ..     645     686 ..     643     722 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.9
                      EEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHH CS
  DXP_reductoisom  25 fevvalaagsnvellaeqakefkpklvavadeeaae 60 
                       ++++++a+ +++ll++ + +++ ++ + a e++a+
       KKY13969.1 554 LDISTVYANPSIHLLTQAILKLSEAYQTTAAERQAS 589
                      567777788888888888877776665555554432 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 6.4e-06
                      EEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHH CS
  DXP_reductoisom   2 viLGsTGSIGtqtLdvieenpdkfevvalaagsnvellaeqa 43 
                      ++ GsTG IG   L+++ ++pd f+v+ l   sn  +l  q 
       KKY13969.1 645 LLTGSTGAIGCYILSILLATPDIFHVYCLNRASNSMALQIQR 686
                      567**************************9988776665443 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         2   5.1e+03       1      11 [.     306     316 ..     306     330 .. 0.83
   2 ?    6.4   0.0    0.0072        18       2      20 ..     372     390 ..     371     455 .. 0.79
   3 ?   -2.2   0.0       3.4   8.7e+03      42      62 ..     586     607 ..     569     618 .. 0.67
   4 ?    3.7   0.0     0.047   1.2e+02       7      26 ..     778     797 ..     776     834 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2
                    HHHHHHHSSTT CS
  AMP-binding_C   1 evEsalvshpa 11 
                    e E+++v+hp+
     KKY13969.1 306 EYEAVVVRHPD 316
                    67999999997 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0072
                    HHHHHHSSTTEEEEEEE-- CS
  AMP-binding_C   2 vEsalvshpaVaeaaVvGv 20 
                    +E+ +++hp+V+ a V+G 
     KKY13969.1 372 MEQKIATHPQVQSALVIGT 390
                    79***************94 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.4
                    HHHHHHHHHHHHT-TTT.S-SE CS
  AMP-binding_C  42 leeeLkahvrkelgpya.vpkk 62 
                     ++ + ++v+k lg+y    ++
     KKY13969.1 586 RQASITERVEKMLGEYElMVDE 607
                    56899999******99624444 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.047
                    HSSTTEEEEEEE-----TTS CS
  AMP-binding_C   7 vshpaVaeaaVvGvpdevkG 26 
                    +s+  Va aaVvG++ + k 
     KKY13969.1 778 SSVSSVAGAAVVGKQIPEKI 797
                    67899**********99665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1095 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.76u 0.36s 00:00:01.12 Elapsed: 00:00:00.50
# Mc/sec: 6589.96
//
Query:       KKY13970.1  [L=294]
Description: hypothetical protein UCRPC4_g06885 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 2057.62
//
Query:       KKY14015.1  [L=429]
Description: putative allantoate permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-12   46.6  31.2    5.9e-07   28.7   1.9    2.5  3  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.24   11.0   3.6        0.1   12.2   0.4    2.0  2  DUF2208   Predicted membrane protein (DUF2208)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   1.9   6.6e-11   5.9e-07       2      94 ..      67     159 ..      66     170 .. 0.85
   2 !   26.0  18.5   4.3e-10   3.9e-06     202     353 .]     199     350 ..     168     350 .. 0.76
   3 ?   -2.1   0.1      0.15   1.4e+03     154     172 ..     365     383 ..     360     405 .. 0.53

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 6.6e-11
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvl 94 
                 l+++f+ +l+ ++l+++  + ++ed ++ ++ +++l t+ + g +++ +p+ +l ++f   ++l + ++++++ +++ + a+s+ +l+v+  l
  KKY14015.1  67 LVTYFCQSLDKGTLNFSSIMGIKEDANLVGQDYSWLGTILYMGIMAGEYPTNFLLQKFPVAKYLAANVFCWGVVITCSAAATSFAPLMVVGGL 159
                 689***************99**************************************9999************6666644666655555443 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 4.3e-10
       MFS_1 202 allkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt..s 298
                 + l+dp++w++++ +l++ +++ gl +++ l+  + +g++  l++ ll  + ++v++i+++ +++ls+r+g    ++l   + +++  g+++   +  s
  KKY14015.1 199 EALTDPFVWCCVLLILVANLVIGGLGVFSNLI-ISAFGFT-TLQTQLLNIAQGAVTIIVMISSAWLSQRTGQTSLIMLLWTIPAVIGTGVIIGIKPtsS 295
                 47999*9**99999999999***********7.*******.67777667777777777799********999555555554444444444443333226 PP

       MFS_1 299 savllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                 +a  ll+++++  f+l+  + ++  +  + a++ + g+ ++ + + +++g +++p
  KKY14015.1 296 NAGGLLIAFYCTQFFLAQGNMIISLISRNIAGRTKKGFCMSMVFVGWAVGNMVAP 350
                 6666666888888888877777777777777**********************98 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.15
       MFS_1 154 fyilaivsllafvlfllll 172
                 f+++ i++ + fvl+++  
  KKY14015.1 365 FVAHLIIYGIYFVLVIATR 383
                 4555555555555333222 PP

>> DUF2208  Predicted membrane protein (DUF2208)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       0.2   1.8e+03     104     162 ..     216     273 ..     187     298 .. 0.55
   2 ?   12.2   0.4   1.1e-05       0.1     124     165 ..     359     400 ..     321     403 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.2
     DUF2208 104 ffllyryiiplassllgevleeklarflaflalFealflismflrllarrvlkklvmli 162
                 + l+   ++ + + +++ ++  +l++ l ++a  +a++ i m+++ +++++++++  ++
  KKY14015.1 216 ANLVIGGLGVFSNLIISAFGFTTLQTQLLNIAQ-GAVTIIVMISSAWLSQRTGQTSLIM 273
                 444445555555555555555555555555444.4445555555555555554444333 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 1.1e-05
     DUF2208 124 eeklarflaflalFealflismflrllarrvlkklvmlimat 165
                  + +  f+a l++++++f++ +++rll++r+ +k+ + ++at
  KKY14015.1 359 PRYIHGFVAHLIIYGIYFVLVIATRLLLMRRNSKKRAAVVAT 400
                 366899*********************977777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2864.97
//
Query:       KKY14016.1  [L=463]
Description: putative glucuronyl hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-11   42.9   0.9    4.3e-11   42.5   0.9    1.2  1  Glyco_hydro_88  Glycosyl Hydrolase Family 88
  ------ inclusion threshold ------
      0.026   14.0   0.7       0.18   11.3   0.1    2.2  2  C5-epim_C       D-glucuronyl C5-epimerase C-terminus
       0.18   11.8   0.1       0.44   10.6   0.1    1.6  1  MinE            Septum formation topological specificity fact


Domain annotation for each model (and alignments):
>> Glyco_hydro_88  Glycosyl Hydrolase Family 88
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.9   7.1e-15   4.3e-11     122     293 ..     225     401 ..     142     460 .. 0.74

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 7.1e-15
                     STTEEETHHHHHHHHHHHHHHHHHCGT..HHHHHHHHHHHHHHHH..........HBETTTSEB-SEEETTTTSTTS.--BHHHHHHHHHHHHHH CS
  Glyco_hydro_88 122 epeqlWlDgLfMaipllaklskvtgep..kyldeaikqflltarh..........lfdpetGlyyhgwdesgtedwakefWaRgngWalaglaev 204
                     +++ +++D + M++ +l  +sk++g+p  +y++  +  + ++a +           fd++tG      +++g+++++   W+Rg++W +ag+a++
      KKY14016.1 225 KDFLVIIDNM-MNLDILYYVSKLNGDPrlEYIATSHAVATISAHIrdddstfhvvNFDQTTGQVKERFTNQGYSHDSC--WSRGQAWGIAGFAQA 316
                     4566789**9.9***************66666655555555555588****************************766..*************** PP

                     HHHS-TT-TTHHHHHHHHHHHHHHHHCTS-.TTSSEBSBTT-TTTTSSBEHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHC...E CS
  Glyco_hydro_88 205 lelLpekekarqelinllrdlvkalaklqd.eeglWhqilddgskesylEtSatalfvygLakgvnkglldkkkykkvaqkawkallkk...a 293
                     +   +     +    + l+d++  +a l+d    +W+ +   +     ++tSa  +++ygL   + +   ++ +y ++a + ++a++kk   a
      KKY14016.1 317 YGWTKD--ERFLATSKRLADYF--IAHLPDdFVPYWDFSAPLPG---PRDTSAAMVAAYGLIL-LYEAESNSTRYLDAALRIIEAVIKKycsA 401
                     *98655..55666666666666..99999988899998888887...89************88.666666799************99994431 PP

>> C5-epim_C  D-glucuronyl C5-epimerase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1     3e-05      0.18      21      62 ..     298     337 ..     281     342 .. 0.78
   2 ?    0.5   0.1     0.062   3.7e+02      28      61 ..     363     394 ..     360     411 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3e-05
   C5-epim_C  21 lspGWlsamaqgqaisvllrAYeltgdekYlkaakkalksfk 62 
                 ++  W     q+  i  +++AY  t+de++l ++k++ ++f 
  KKY14016.1 298 HDSCWSR--GQAWGIAGFAQAYGWTKDERFLATSKRLADYFI 337
                 5555644..47888999*******************998875 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.062
   C5-epim_C  28 amaqgqaisvllrAYeltgdekYlkaakkalksf 61 
                 am  ++ +++l++A  +++  +Yl+aa + ++++
  KKY14016.1 363 AMVAAYGLILLYEA--ESNSTRYLDAALRIIEAV 394
                 78888888888887..788899**9999998865 PP

>> MinE  Septum formation topological specificity factor MinE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   7.4e-05      0.44      11      64 ..     370     425 ..     369     429 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.4e-05
                 EEEEEES.SS--TTCCHHHHHHHHHHHHHH...-..-SEEEEEEE--.-E..EEEEEE CS
        MinE  11 liLahdRaslspelleqlkeeileviskYv...eideekvevkleke.kedvsvLean 64 
                 liL ++ +s s  +l++  + i +vi+kY     i++e++ +++ ++ ++  +++ +n
  KKY14016.1 370 LILLYEAESNSTRYLDAALRIIEAVIKKYCsanAIETEDLGIEMAETnDH--ETILLN 425
                 688888899999999999999*********776699********955243..444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3124.16
//
Query:       KKY14017.1  [L=815]
Description: putative gpi anchored protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-12   46.9  23.2    7.3e-08   32.3   9.3    3.8  2  Alginate_lyase  Alginate lyase
  ------ inclusion threshold ------
       0.17   11.6   0.4          3    7.6   0.0    2.7  2  eIF3m_C_helix   eIF3 subunit M, C-terminal helix


Domain annotation for each model (and alignments):
>> Alginate_lyase  Alginate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   9.3   8.2e-12   7.3e-08      47     266 ..      96     318 ..      60     323 .. 0.78
   2 !   16.9   6.0     4e-07    0.0036      45     265 ..     508     716 ..     468     722 .. 0.70

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 8.2e-12
                     CHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHCTTTCCCCCCCCCCCBTT..GGGGGGHHHHHHHHHCTTCSSSHHHHHHHHH CS
  Alginate_lyase  47 daecdlkaleawadavallalayyltgdkrYaekagellraWfldpktrmnpnleyaqaikggrgagiidtevldalalleaakalpekerkaie 141
                       + +++ l ++a+++++la  +++tg++ Ya+  +++l+aW   + t    n +       + ++g+   ++++a+++l+a+ +++  ++ a +
      KKY14017.1  96 GTAENYNDLYKDAAEAYALAIYWKVTGNTTYANTSATILDAW---SSTLKVINGTSDR----YLASGLYGYQLANAAEILRAYDGWTGLSDMASM 183
                     45789999**********************************...4444555553222....568899999999******999999988655544 PP

                     H...HHHHHHHHHHHCHHHCCCCTGCSHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-.TTS-BHHHHGS.........GGGHHHH CS
  Alginate_lyase 142 k...WfkklldwlqtsrkgkdekaaknNHgywaalqvaaialvlgdrdlldkalkrykrailndqia.pdGslpeElaR.........gtralhY 223
                         +++  +d+l +++  +  + +  N++ ++  ++ ai+++ +++ ++++a   +  ++ n+qi+ +  +l  E             +r   +
      KKY14017.1 184 LtnvFYSLNHDFLVNHNGAEIDHYW-ANWDLCNMCSMQAIGVLSDNSTMFEEANSYFESGAGNGQINnAIWKLYTEEGSgktlgqgqeVGRDQGH 277
                     4566777778877777744444443.9***************************99999999999983333444444446666666666668888 PP

                     HHHHHHHHHHHHHHHHCTT--GTC.TCTCCCHHHHHHHHHHHH CS
  Alginate_lyase 224 snfaLqalvmiaelaerngvdlweysedgktlkkavdfllpyv 266
                     +  + + l ++a+ a+++ +d +  s++++ + + +++ ++y 
      KKY14017.1 278 TMLDYALLGVFAQQAWQQSIDFY--SYNDSLILAGAEYAAKYN 318
                     88888889999999999999999..559999999999999885 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 4e-07
                     HCCHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHCTTTCCCCCCCCCCCBTT.....GGGGGGH..HHHHHHHHCTTCSSSHH CS
  Alginate_lyase  45 nedaecdlkaleawadavallalayyltgdkrYaekagellraWfldpktrmnpnleyaqaikg...grgagiidt..evldalalleaakalpe 134
                     +     +++++ ++++a++  al++y+t+d+++ + a ++l+aW  +  +    +  +  + +g   +++a+i++          ++ea ++++ 
      KKY14017.1 508 ERGSTSNYSTFTSDSRAAWQNALMWYFTNDTAHWNIATTILDAWGSNLTNIIGTDRSLLLGLEGdllVNAAEIMRWegG------WVEAGSKWQG 596
                     4556789999**********************************55555555555555555555888888888886443......3355566665 PP

                     HHHHHHHHHHHHHHHHHHHCHHHCCCCTGCSHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-....TTS-BHHHHGSGGGHHHHHH CS
  Alginate_lyase 135 kerkaiekWfkklldwlqtsrkgkdekaaknNHgywaalqvaaialvlgdrdlldkalkrykrailndqia....pdGslpeElaRgtralhYsn 225
                      +     + +  +++  q ++ g+       N+g  +  +++++a++l+d +l++ a++++ + + ++ +       G +  E+ R     ++  
      KKY14017.1 597 GS-GFSVQLYWLFSR--QSIPIGQ------ANYGMVSIKALLSFAVYLDDVELYNYAINQFLNNRCASYLSmyepTTG-QSVESGR---DQSHAE 678
                     53.333332323555..5556666......9*****************************999887776653222233.5555555...677777 PP

                     HHHHHHHHHHHHHHCTT--GTC.TCTCCCHHHHHHHHHHH CS
  Alginate_lyase 226 faLqalvmiaelaerngvdlweysedgktlkkavdfllpy 265
                       +   ++ a++a+ +g dl+  +  ++ l ka+++++++
      KKY14017.1 679 SGISWTALGARVAQSQGSDLY--TLGDNLLLKAAEYTAKF 716
                     777777777888888888888..66888888888888876 PP

>> eIF3m_C_helix  eIF3 subunit M, C-terminal helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1     0.037   3.3e+02      15      25 ..     134     144 ..     131     147 .. 0.84
   2 ?    7.6   0.0   0.00033         3      15      28 ..     548     561 ..     546     561 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.037
  eIF3m_C_helix  15 LdaWksnLanV 25 
                    LdaW s+L+ +
     KKY14017.1 134 LDAWSSTLKVI 144
                    9*******976 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00033
  eIF3m_C_helix  15 LdaWksnLanVleV 28 
                    LdaW snL+n++++
     KKY14017.1 548 LDAWGSNLTNIIGT 561
                    9**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.53
# Mc/sec: 4641.39
//
Query:       KKY14018.1  [L=518]
Description: hypothetical protein UCRPC4_g06879 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-12   44.6   0.6    9.4e-09   34.3   0.0    2.2  2  Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127


Domain annotation for each model (and alignments):
>> Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1     3e-05      0.54      65     128 ..      63     122 ..      22     154 .. 0.81
   2 !   34.3   0.0   5.2e-13   9.4e-09     299     394 ..     299     405 ..     253     423 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 3e-05
                      HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCHSSS-B-GCCTHHSSEETTEESH----HHHHH CS
  Glyco_hydro_127  65 wleavalllastkdkelekrldrlvdelakaQqedGYlsavtelkneakkeawapdshelYnlg 128
                      w + +  l+++ +d++l++++++++d     Q+edG+l++ t++     ++ wa  s  l+ l 
       KKY14018.1  63 WFNYIVPLAYTLDDERLKQQAKAFLDYTLDHQAEDGWLGPETTRA---TRGLWAR-SLLLFGLT 122
                      556666678899***************************999888...8899988.55555444 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 5.2e-13
                      -BHHHHHHHHHHHHHHHHCH--CHHHHHHHHHHHHTTGGGB-TTTS-BBSB--STTTBS--SS...........SC-BTTTTT-CHHHHHHHHC CS
  Glyco_hydro_127 299 aEtCasinmlklarrlleltpdakyadvlEralyNsilagvsldgksffYvnplesgskklrk...........lystkwdscaCCppnglrtv 381
                      +E C +++m++  + l++  +++++ad +Era +N + a++s+d  +  Y +  +++ + +                  + +++CC  n+ +  
       KKY14018.1 299 SELCMAVEMMFSMSFLYRFYGETSFADKVERAGFNALPAALSPDWWAHQYATQTNQQFSGNLSvkpfynivsygNTFGLEPNFPCCTVNHPQGY 392
                      89************************************************99996665554446789999955544445679************ PP

                      CGGGGGSEEEETT CS
  Glyco_hydro_127 382 aklgeyiYaesdd 394
                      +k+    Y ++++
       KKY14018.1 393 PKYVAASYVSDQK 405
                      ********99954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.52
# Mc/sec: 2990.35
//
Query:       KKY14019.1  [L=410]
Description: putative alpha-galactosidase alpha-n-acetylgalactosaminidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-58  196.1   8.2    3.1e-57  193.9   8.2    2.1  1  Melibiase_2    Alpha galactosidase A
    1.4e-11   44.3   0.3    3.2e-11   43.2   0.1    1.7  2  Melibiase_C    Alpha galactosidase C-terminal beta sandwich d
    4.3e-09   35.8   0.1      1e-08   34.5   0.1    1.5  2  Melibiase      Melibiase
    5.1e-07   27.9   0.0    7.6e-07   27.3   0.0    1.1  1  Raffinose_syn  Raffinose synthase or seed imbibition protein 
  ------ inclusion threshold ------
      0.023   14.9   0.0      0.071   13.4   0.0    1.8  2  Melibiase_2_C  Alpha galactosidase A C-terminal beta sandwich
        0.1   12.9   0.0       0.23   11.8   0.0    1.5  1  DUF2655        Protein of unknown function (DUF2655)


Domain annotation for each model (and alignments):
>> Melibiase_2  Alpha galactosidase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.9   8.2     1e-60   3.1e-57       1     284 []      30     317 ..      30     317 .. 0.84

  Alignments for each domain:
  == domain 1  score: 193.9 bits;  conditional E-value: 1e-60
                  S--EEEESHHHHTT---TTTSTTTSSSHHHHHHHHHHHHHTTHHHHT--EEE--SS-B-SS--TTS---B-TTTSTTHHHHHHHHHHHTT-EEEEEEE CS
  Melibiase_2   1 tppmgwlawerfrcnvdceedpenciseklfmeladvlaedgykdlgyeyviiddcwlakerdkegrlqadpkrfpsgikkladyvhskglklgiyad 98 
                  tp mgw++w+ f+ n +          ++ ++ + d+l + g +d+gy+yvi+d+ w+  erd+egr q+++++fp+gi +la+yvh+ ++k+giy+d
   KKY14019.1  30 TPQMGWNSWNAFKTNFN----------QSTIKTTVDLLESTGLRDVGYNYVILDEGWQDLERDSEGRQQPNTTKFPDGIAALAQYVHQSDMKIGIYSD 117
                  8************9985..........34567889*************************************************************** PP

                  SSSB-TTSSB--TTTHHHHHHHHHHHT--EEEEE-TS...SSHHHHHHHHHHHHHHHHHTTS--EEE.E-H....HHHH.TTTS-.....--....HH CS
  Melibiase_2  99 lgtktcagypgslkyleidaktfadwgvdllkldgcy...snleelaegykelslalnktgrsivys.cew....plyavvkkkk.....vd....yt 179
                   g   ca ypgs  y e da  +a wg+d+lk+d c    +n+++ +  +++++ al ++gr+i+ys cew    p y + +  +      d    ++
   KKY14019.1 118 AGIYDCAFYPGSWGYEELDAAIYATWGIDYLKYDNCGgfeANTQSPQVRFSAMRDALKNSGRDIFYSiCEWghqfPWYWADQIGQsyrmsGDittiFS 215
                  **********************************995445788888999*****************999*9555555653222110111122111245 PP

                  HHHHH-SEEE-SS.---SSHHHHHHHHHHHHHTHHHHTTT-BTTBEEE---B-TTSSSS-HHHHHHHHHHHHHTT--EEE-S-TTS--HHHHHHHT-H CS
  Melibiase_2 180 eiaktcnlwrnyd.diqdswdsvkeivdyfaenqdvlvevagpgkwndpdmliignfglsldqqraqmalwailaapllmsndlrkispeakalllnk 276
                  +  k c     y  +   +  sv +i+    ++  +++e    g++ d dml ign +++l+q+r+ m++wa l +pl++ +dl ++s+++ ++l nk
   KKY14019.1 216 DTGKDCACKTAYClNTGYAGCSVLTII----RKMREIAEFQHTGSFADMDMLEIGNANMTLNQERTHMSFWAALKSPLIIGADLSTLSNSSLSVLTNK 309
                  556677766666412333344555555....45677999999******************************************************** PP

                  HHHHHHT- CS
  Melibiase_2 277 eviainqd 284
                  e+iai+qd
   KKY14019.1 310 EIIAISQD 317
                  *******9 PP

>> Melibiase_C  Alpha galactosidase C-terminal beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       4.2   1.3e+04      21      35 ..      45      62 ..      43      70 .. 0.60
   2 !   43.2   0.1   1.1e-14   3.2e-11       2      71 .]     333     409 ..     332     409 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.2
                 EE.-E...EEEE.-GTT- CS
  Melibiase_C 21 fN.rt.tvtvdw.sdlgl 35
                 fN +t ++tvd+ ++ gl
   KKY14019.1 45 FNqSTiKTTVDLlESTGL 62
                 674224567777555555 PP

  == domain 2  score: 43.2 bits;  conditional E-value: 1.1e-14
                  TTEEEEEEE-SSS-EEEEEEE...-E...EEEE.-GTT--S-..EEEEETTTTEEE-..TT--EEEE-TT-EEEEEE CS
  Melibiase_C   2 gdlqvWakpLsdGdvaValfN...rt.tvtvdw.sdlglpgsssysvrDlWtgkdlg..tgsssaevpphgvvllrl 71 
                   +lqvWa+pLs+++++++++N   +t t ++++ +  gl g   ys rD+W+ k+l+   g+ s+ +++ ++++l l
   KKY14019.1 333 KTLQVWAGPLSENRTVLLVLNesnDTmTRNIPLgQITGLRGDLAYSGRDVWSSKNLAsiVGNLSLVIDADETKVLIL 409
                  689******************75323456899966889****99***********555688889********99975 PP

>> Melibiase  Melibiase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.1   3.5e-12     1e-08      45     123 ..      35     115 ..      18     120 .. 0.81
   2 ?   -2.9   0.0      0.83   2.5e+03     180     192 ..     141     153 ..     133     168 .. 0.75

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 3.5e-12
   Melibiase  45 lnsWeavyfdfnedklkeladea.....aklGielfvlDDGWfgkrnddnssLGDWfvneeklpdgleelakevhekglkfGlW 123
                  nsW+a   +fn++++k+ +d       +++G + ++lD+GW      ++ s G  + n++k+pdg+++la++vh+  +k G++
  KKY14019.1  35 WNSWNAFKTNFNQSTIKTTVDLLestglRDVGYNYVILDEGWQDL---ERDSEGRQQPNTTKFPDGIAALAQYVHQSDMKIGIY 115
                 69***************9888541112256777899******754...44456889**************************98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.83
   Melibiase 180 keaqidyvkWDmn 192
                 +  +idy+k+D+ 
  KKY14019.1 141 ATWGIDYLKYDNC 153
                 56789*****986 PP

>> Raffinose_syn  Raffinose synthase or seed imbibition protein Sip1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   2.5e-10   7.6e-07     200     255 ..      32      90 ..      25     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 2.5e-10
  Raffinose_syn 200 kfGwctwdafylevdaegvekGvksledGG...vpPkfviiddGwqsiekdedldkdae 255
                    ++Gw +w+af ++ ++ ++++ v  le  G   v  ++vi+d+Gwq++e+d+++ ++ +
     KKY14019.1  32 QMGWNSWNAFKTNFNQSTIKTTVDLLESTGlrdVGYNYVILDEGWQDLERDSEGRQQPN 90 
                    58**************************994445679***************9776655 PP

>> Melibiase_2_C  Alpha galactosidase A C-terminal beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.3     7e+03      35      59 ..     204     228 ..     200     240 .. 0.75
   2 ?   13.4   0.0   2.4e-05     0.071      10      43 ..     332     365 ..     328     399 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.3
                    SSS-EEEEEEGGGGGGGTTTSSEEE CS
  Melibiase_2_C  35 igmPrkytlslaklkkklvcspayn 59 
                    + m   +t+ +++ +k  +c++ay 
     KKY14019.1 204 YRMSGDITTIFSDTGKDCACKTAYC 228
                    5566677788888888888888875 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.4e-05
                    ETTEEEEEEEESTTEEEEEEEE---SSS-EEEEE CS
  Melibiase_2_C  10 kdkievweRplskkslAvavLnrreigmPrkytl 43 
                    +  ++vw+ pls++++ + vLn+ ++ m r++ l
     KKY14019.1 332 EKTLQVWAGPLSENRTVLLVLNESNDTMTRNIPL 365
                    6689*******************99776665543 PP

>> DUF2655  Protein of unknown function (DUF2655)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.6e-05      0.23      25      47 ..     212     234 ..     201     251 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.6e-05
     DUF2655  25 eifpstgkdcnpqpanclkdqyv 47 
                  if  tgkdc  + a cl+  y 
  KKY14019.1 212 TIFSDTGKDCACKTAYCLNTGYA 234
                 69****************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 2608.21
//
Query:       KKY14020.1  [L=591]
Description: putative purine transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-25   89.1  30.2    6.2e-25   87.7  26.5    2.7  2  Xan_ur_permease  Permease family


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1     0.029   5.2e+02       3      29 ..      42      68 ..      40      75 .. 0.85
   2 !   87.7  26.5   3.4e-29   6.2e-25      36     385 ..      97     479 ..      86     483 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.029
                     HHHHHHHHHHHHHHHHHHHHHTTTS-. CS
  Xan_ur_permease  3 llllglQhllamfaalvvvPllvgdal 29
                     ++ +gl +++am + + v++ +++++ 
       KKY14020.1 42 EIRAGLATFFAMAYIISVNASITSQSG 68
                     57799***********99999999984 PP

  == domain 2  score: 87.7 bits;  conditional E-value: 3.4e-29
                      ..H.HHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG-....HHHHHHHHHHHHHHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHH CS
  Xan_ur_permease  36 rqlisatllasGiatllqllifgirlpillgssfafvtalmialGsaedieialagllgallvagvlfilisltglrgrlarlipPvvtgpvvl 129
                      r l++at  +s++ ++ + l+++++++++ g++++++  + ++ G   +  + ++ +l a++v g++f+ +sl+glr++lar+ip     ++  
       KKY14020.1  97 RDLVTATAAISALTSFCMGLFANMPIALAPGMGLNAYF-TYTVVGYHGTGPVPYRLALTAVFVEGFVFVGLSLLGLRQWLARAIPASLKLATGA 189
                      48999999**************************9988.555555445699******************************************* PP

                      HHHHHHHHHHHHHTTSS-...BTT.....B---HHHHHHHHHHHHHHHHHHHS................SSTTTTTHHHHHHHHHHHHHHHHHH CS
  Xan_ur_permease 130 liGlslaqiavkkvgggwaa.veg....ltvvslkllllavvvllvilllsvf................lkglfsqlpiLigiiagwllalfmg 202
                      +iGl la i+++  +g+ +  ++     +  ++l+ l  +v+  + +    +                 l+++++++++  gii++ ++++  g
       KKY14020.1 190 GIGLYLALIGLTYDSGIGVTtGSVstvlELAGCLESLRDEVTGACPGSNKMRNpttwlgiftggilialLMMYKVKGALIYGIIITSIISWPRG 283
                      ***********98777777665555566677899999999998888777666677777777999999999999******************999 PP

                      .HTTSSHH..............HHS-SS-----------HH..H.HHHHTHHH.HHHHHHHHHHHHHHHHHHTS-TIIIIIHHH...HHHHHHH CS
  Xan_ur_permease 203 .ivnlspe..............vseapwfqlpsplkfgtplfnlgliltvlavalvavvesvGdiravakvvgrslkpkpdlrr...alladGl 278
                        v   p+              v  +p  ++ + l++   +   +  l++++++ v +++ +G+++ +a+++g  +++ +d +    a+l+d +
       KKY14020.1 284 tAVTYFPYtdtgdsafdffkqvVAFHPIEKVLNVLQYDLGSAPGSFGLALITFLYVDILDCTGTLYSMARFCGAIDPRTQDFEGsavAYLVDAF 377
                      87777777899*******99998888999999999999998555566777777779*****************999997766662237889*** PP

                      HHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-SHHHHHH CS
  Xan_ur_permease 279 atllsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssIPepvlgGvllvvfgmiaasgvsnlqtvdldsarnlli 372
                      ++ +++l+G++pvt+y+e+ ++++ +    +++++ta    i++ ++ ++a+ ++sIP  + gG +l++ g ++  ++ +++++   +a  +++
       KKY14020.1 378 GISIGSLFGSPPVTAYIESGAGIQEG----GKTGLTAMATGICFFISIFFAPIFASIPPWATGG-TLILIGAMMTKAIVEINWKYPGDAIPAFV 466
                      **************************....*******************************555.67778999999****99999999999999 PP

                      HHHHHHHHHH--- CS
  Xan_ur_permease 373 vavslvlGlgvat 385
                      + +++ ++ ++a+
       KKY14020.1 467 CLMIMPFTYSIAY 479
                      9999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 3539.07
//
Query:       KKY14021.1  [L=505]
Description: putative aspartic-type endopeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-63  213.6   0.6    4.4e-62  210.3   0.6    2.1  1  Asp              Eukaryotic aspartyl protease
      2e-08   34.7   0.1      2e-08   34.7   0.1    3.8  5  TAXi_N           Xylanase inhibitor N-terminal
     0.0014   19.3   1.0       0.55   10.9   0.1    3.6  2  Asp_protease_2   Aspartyl protease
  ------ inclusion threshold ------
       0.09   11.8   1.0       0.13   11.3   1.0    1.2  1  Corona_nucleoca  Coronavirus nucleocapsid protein


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.3   0.6   9.7e-66   4.4e-62       1     315 []      38     385 ..      38     385 .. 0.82

  Alignments for each domain:
  == domain 1  score: 210.3 bits;  conditional E-value: 9.7e-66
                 EEEEEEEETTTTEEEEEEEETT--SEEEEBTT...EST..SHCHHTSS-B-GGG-TT-E.EEEEEEEEECTTSEEEEEEEEEEEEETTEEEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx..xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   1 eYfgeisiGtpeqkftvifDTGSsdlWVpssk...ckk..ssackshstydpskSstyk.kngkslsisYGdgsvsGflsqdtvkvggltvknqefgea 93 
                 +Y+ +isiGtp q+ +vi+DTGSsdlWVps++   ckk   ++c  +  yd+ kSsty+      ++isY  g++ G +++dtv +g+ ++++q+fg++
  KKY14021.1  38 QYLVNISIGTPAQDIQVILDTGSSDLWVPSVDsnvCKKdpAKDCP-RGSYDSAKSSTYHeVIADGFNISYVRGAAIGDFVNDTVRLGDFVIQEQRFGNV 135
                 7*****************************997777774334454.678*********94457789********************************* PP

                 EEESSHHHTTSSSSEEEE-S-GGGSCGG.SCCHHHH....HHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGEEEEEEEEEESS......TSSTEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxx RF
         Asp  94 tkepgstflaakfdGiLGlgfkeisvee.atpvfdn....lvsqglikepvfsvylnreeeeggeivfGgvDeskykGsltyvpvts......kgywqi 181
                    ++        +GiLG+++   ++ e  +  ++n    l+ +gli+++ fs++ln ++ + g+i+fGgvD+sky+G+l+++p+ +         +++
  KKY14021.1 136 RDLST-------GNGILGMAYAIAEALEdGEKEYSNfldsLYTNGLIESKTFSLWLN-DKGDNGTILFGGVDSSKYSGDLIAIPIHEdvftgmIDSYDV 226
                 *9999.......7********9988877644444444445*****************.9999*************************777544444999 PP

                 EEEEEEETTEEE.......EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEETTCEEEEETTGGGGSEEEEEEE...TTEEEEEEGGGGE..... CS
                 xxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxx..... RF
         Asp 182 elesvtvggktv.......lcssgcqailDtGTsllalptsivekiakaigakksesegeyvvdCdslsslpdisfti...ggakitvpvselv..... 265
                  l+s+++  +++        ++ +++a lD+GT+ l lp++i ++++  +g+  +   g+    C+ ++s+ +++f +   +g +i+vpv +l+     
  KKY14021.1 227 PLTSLSYRANSSaqetqlmKQNVTMAATLDSGTTALLLPNDIFAELMLGLGGLWVD--GTAYAPCEYTNSSGSLTFGFagtDGPSIEVPVGQLIipips 323
                 9999999888775666653444556777**********************996655..58899**************9888566677776666633333 PP

                 .............EEESSSTTSEEEESEEECCTSSSEEEEHHHHTTEEEEEETTTTEEEEEEE CS
                 .............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 266 .............lkeeeseesqCilglvseeegdlwiLGdvFlrsayvvfdldnnrvglAea 315
                                ++++e+s+C+l + s+++  +++LGd Flrsayvv+  +nn+v +A+a
  KKY14021.1 324 edlkhdskaksesSDDGSDESSTCYLLI-SPNDDTYNLLGDAFLRSAYVVYSQQNNTVAIAQA 385
                 33223322211111223345689***99.99999***************************96 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.1   4.5e-12     2e-08       1      54 [.      39      97 ..      39     100 .. 0.89
   2 !    5.1   0.0    0.0056        25      82     178 .]     103     197 ..      99     197 .. 0.76
   3 ?   -3.8   0.0       2.8   1.3e+04      84     107 ..     232     255 ..     229     266 .. 0.71
   4 ?   -1.7   0.1      0.67     3e+03      66      95 ..     334     363 ..     321     405 .. 0.64
   5 ?   -1.9   0.1      0.77   3.5e+03      43     137 ..     452     477 ..     406     489 .. 0.58

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 4.5e-12
      TAXi_N  1 YlvsisiGtppqplklvvDtGsdltWvqCkpcka.....cssqkkpvfdpsksstykav 54
                Ylv+isiGtp+q++++++DtGs+ +Wv     +      +++++++ +d +kssty++v
  KKY14021.1 39 YLVNISIGTPAQDIQVILDTGSSDLWVPSVDSNVckkdpAKDCPRGSYDSAKSSTYHEV 97
                9*************************9986555566688889999***********987 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0056
      TAXi_N  82 eisygadgssssGvlatdtltlsstdgksvkvpnlvfGCgksnlgglaagadGilGLGrgk...........lSlvsqlaskg.slgnkFsyCLsssss 168
                 +isy  +g  + G++++dt++l     +   +++  fG ++    +l +  +GilG++++              +++ l ++g + +++Fs+ L  +++
  KKY14021.1 103 NISYV-RG-AAIGDFVNDTVRL-----GDFVIQEQRFGNVR----DLST-GNGILGMAYAIaealedgekeySNFLDSLYTNGlIESKTFSLWL--NDK 187
                 67885.66.9999999999999.....77889999999887....3443.46888888876666777777766677777777756677899999..999 PP

      TAXi_N 169 sssgvlffGd 178
                  ++g ++fG+
  KKY14021.1 188 GDNGTILFGG 197
                 9999999996 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 2.8
      TAXi_N  84 sygadgssssGvlatdtltlsstd 107
                 sy a++s ++ +l++ ++t+  t 
  KKY14021.1 232 SYRANSSAQETQLMKQNVTMAATL 255
                 666677788888888888887764 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.67
      TAXi_N  66 asssaksgsssstceyeisygadgssssGv 95 
                 ++ss + +++sstc   is ++d+ +  G+
  KKY14021.1 334 SESSDDGSDESSTCYLLISPNDDTYNLLGD 363
                 455555666677777777665454444443 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 0.77
      TAXi_N  43 fdpsksstykavpcssslCkaceasssaksgsssstceyeisygadgssssGvlatdtltlsstdgksvkvpnlvfGCgksnlgglaagadGilG 137
                 f+   s++ +a                                                                     s+++++aa+++G +G
  KKY14021.1 452 FNLGVSTSVAA---------------------------------------------------------------------SSSESSAASSTGTAG 477
                 33333333333.....................................................................344444444444444 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   0.00012      0.55       8      88 ..      50     147 ..      41     149 .. 0.77
   2 ?    3.5   0.1     0.026   1.2e+02       8      33 ..     249     274 ..     243     285 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
  Asp_protease_2   8 kpvrfllDTGasttlispelaeklglkvreseltvrvsgaggevkarlvrlds..................lklggltlknvpalvldlgeeidg 84 
                     + ++++lDTG+s + +++   + ++ ++ ++  + ++++a  +++ ++v +d                   ++lg+++++++++  + + ++ +g
      KKY14021.1  50 QDIQVILDTGSSDLWVPSVDSNVCKKDPAKDCPRGSYDSAK-SSTYHEVIADGfnisyvrgaaigdfvndtVRLGDFVIQEQRFGNVRDLSTGNG 143
                     5679999*****99999999999999988886555555544.5566666666556777788788888888899999999999999999889999* PP

  Asp_protease_2  85 lLGm 88 
                     +LGm
      KKY14021.1 144 ILGM 147
                     ***9 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.026
  Asp_protease_2   8 kpvrfllDTGasttlispelaeklgl 33 
                     +++ + lD+G +++l++++  ++l l
      KKY14021.1 249 VTMAATLDSGTTALLLPNDIFAELML 274
                     578999*************9999866 PP

>> Corona_nucleoca  Coronavirus nucleocapsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.0   2.9e-05      0.13     114     195 ..     403     486 ..     393     504 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.9e-05
                      ---TTEEEEE-TTSBTTS-TTTS...-B-TTT---B-----TT---ST.TEEETT-SXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Corona_nucleoca 114 dkieGvfWvaregalnkpksdig...trdpsnneakplrladGtvlPq.gfyvegsgrsraasrsgsrsrsrsrnrarsssrgrsp 195
                       +i Gv + a+    +k  + i+   t +p+   a  +++ +G + P   f + +s  s aas s s + s +     sss    +
       KKY14021.1 403 GSIPGVTFTATGSPATKRVTTIVaaqTANPTVVSAEGTNF-EGDTFPSaTFNLGVS-TSVAASSSESSAASSTGTAGESSSATSTK 486
                      6789999999988888877778634467899999******.777777526889888.66666666555555544555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 3020.61
//
Query:       KKY14035.1  [L=287]
Description: putative trna (uridine-2o-)-methyltransferase trm7 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-62  209.3   0.0    7.2e-62  208.6   0.0    1.3  1  FtsJ      FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.6   0.0     4e-66   7.2e-62       1     177 []      21     242 ..      21     242 .. 0.93

  Alignments for each domain:
  == domain 1  score: 208.6 bits;  conditional E-value: 4e-66
                 CCCCHHHHHHHHHHHHT-S-.....TT-EEEECT-TTSHHHHHHCCT.........................................T.-SEEEEEES CS
        FtsJ   1 yrsRsayKLleidekfklfk.....pgktvvDlgaaPGgwsqvllqrl........................................gakgkvvavDl 54 
                 +r+Rsa+KL+++de+f+lf+     + ++vvDl+aaPG+wsqvl++ l                                         ++ kvva+Dl
  KKY14035.1  21 WRARSAFKLIQLDEEFDLFShqhpeKCTRVVDLCAAPGSWSQVLSRTLikgeslgrrawleketqitidingqtdgalpgydlkvlhpRKNVKVVAIDL 119
                 79*****************6222334466***************999999999999999999999999999999999988888877663369******* PP

                 SSSHHHTTEEEECS-CCCSSHHHHHCHCHHHSSEEEEEE--S-SS-CHHHHHHHHHCCCCHHHHCCHCCCCECCCEEEECCCHCCCHHHHHHHHHCCEE CS
        FtsJ  55 qpmaplpgvttiqgditdpetiekikealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFe 153
                 qpma l+g+ ++++dit+p+t ++++eal+  kvdlv+sDgapdv+g hdld y+q+qLl +al+la+++l+pgg fv+k+frg+++e+l +ql+ +Fe
  KKY14035.1 120 QPMATLEGIIQMKADITHPSTVPRMLEALGSDKVDLVISDGAPDVTGLHDLDIYVQAQLLTSALTLAMNVLRPGGKFVAKMFRGHDVEFLDTQLRLVFE 218
                 *************************************************************************************************** PP

                 EEEEEE-SS--CCG-EEEEEEEEC CS
        FtsJ 154 kvsvvkPkssrsesseeflvcrgf 177
                 kv++ kP ssr +s e+f++c+ f
  KKY14035.1 219 KVHISKPGSSRASSLESFVICEAF 242
                 *********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.30s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1910.47
//
Query:       KKY14036.1  [L=730]
Description: putative atp-dependent rna helicase mak5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-40  138.8   0.0    2.7e-40  138.0   0.0    1.4  1  DEAD          DEAD/DEAH box helicase
    1.4e-26   93.0   0.0    9.5e-26   90.3   0.1    2.3  2  Helicase_C    Helicase conserved C-terminal domain
    5.1e-06   26.6   0.0    1.1e-05   25.5   0.0    1.6  1  ResIII        Type III restriction enzyme, res subunit
    0.00024   20.0   0.0     0.0012   17.7   0.0    1.9  2  UTP25         Utp25, U3 small nucleolar RNA-associated SSU pr
  ------ inclusion threshold ------
      0.058   13.5   0.0       0.12   12.5   0.0    1.4  1  Octopine_DH   NAD/NADP octopine/nopaline dehydrogenase, alpha
       0.18   11.8   0.0        0.4   10.6   0.0    1.5  1  Cucumopine_C  Cucumopine synthase C-terminal helical bundle d
       0.36    8.8   1.6       0.53    8.2   1.6    1.1  1  Dicty_REP     Dictyostelium (Slime Mold) REP protein


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.0   0.0   1.1e-43   2.7e-40       1     173 [.     198     384 ..     198     387 .. 0.91

  Alignments for each domain:
  == domain 1  score: 138.0 bits;  conditional E-value: 1.1e-43
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST..SEEEEEETTSSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid..lrvlliiggvaardqlskldng 97 
                 t+iQ+++ip+ilgg+dv+++a TGsGKTla+ ip+l++ ++    + p ali++PtreLa+q+ ++l+++++ ++   r+  ++gg + ++q ++l ++
  KKY14036.1 198 TSIQEACIPEILGGHDVIGKASTGSGKTLAYGIPILHNCLS--IPSSPTALILSPTRELAHQISKHLSTLFEGVSdpPRIATVTGGLSIQKQERQL-AN 293
                 78**********************************99997..99***************************96568999999*************.** PP

                 CSEEEEEHHHHHHHH..HCTSSH.CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTT............SEEEEEESSBSHHH CS
                 xxxxxxxxxxxxxxx..xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddll..stgkln.lsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklq............rqvivlSATlpkdv 173
                 +++v++tpgr+ +++  s g ++ ++++r+lV+DEadrll++g  +++ +il++l++   ++  +            rqv+v+SAT++k +
  KKY14036.1 294 ANVVIATPGRMWEVIdnSHGLIDqMKKLRMLVVDEADRLLSEGHFQEVGKILEALDKEIIEEGDEvgkktqpsartkRQVLVFSATFHKGL 384
                 *************99765666668******************************96544443333789999****9999********9765 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.82   2.1e+03      16      62 ..     242     294 ..     231     301 .. 0.68
   2 !   90.3   0.1   3.7e-29   9.5e-26       1     110 [.     443     551 ..     443     552 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.82
                 TSEEEEEESSHHHHHH.HHHHHHHT.....TSTEEEESTTSTHHHHHHHHHHH CS
  Helicase_C  16 ggkilifvntidrlek.vklllekk.....gikvavlhgelpqnereeileqf 62 
                   ++li ++t++ +++  k l + +       ++a+++g l+ +++e+ l++ 
  KKY14036.1 242 SPTALILSPTRELAHQiSKHLSTLFegvsdPPRIATVTGGLSIQKQERQLANA 294
                 56789999999955444344433334445668999999999999988888766 PP

  == domain 2  score: 90.3 bits;  conditional E-value: 3.7e-29
                 HHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   1 dkleallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 +k ++l+ +l l+++ +++l+f+n+i+  +++  +l++ ++ + +lh++++q+ r++++e+f +     Liatdva+rG+di+++ l++++++pr+ + 
  KKY14036.1 443 EKDLYLYTIL-LQNSSKRTLVFTNSISATKRIASFLQNLKLPSHALHSSMEQKARLRSIERFTASAGSTLIATDVAARGLDIKGIGLIVHYHVPRTADM 540
                 588999***9.9***************8877677777779***********************99999******************************* PP

                 HHHHHTTSSST CS
  Helicase_C 100 yiqriGRtgRa 110
                 y++r+GRt+Ra
  KKY14036.1 541 YVHRSGRTARA 551
                 **********8 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   4.3e-09   1.1e-05      30     159 ..     217     350 ..     198     382 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 4.3e-09
                 EESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG......GEEEESSS-B--.......-SEEEEEHHHHHHTH....... CS
      ResIII  30 kmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseayke..igkkvsgdkkkakekdstnkkilvttiqsldadseeeeees 125
                 k+ TG+GKTl + + +  ++l+  +   +l+l p+++l  q  ++++ +++   +   i +++ g + +++e++  n++++++t  ++ + +     +s
  KKY14036.1 217 KASTGSGKTLAYgIPILHNCLSIPSSPTALILSPTRELAHQISKHLSTLFEGVSDPprIATVTGGLSIQKQERQLANANVVIATPGRMWEVI----DNS 311
                 789*********9*********99999******************999999987779777776777766688899*************9999....223 PP

                 .HHHTTT-S..EEEEETGGGTTS.TTTHHH...HHT--- CS
      ResIII 126 eellrdrfd..viiiDEaHrlgakkswrei...lekfke 159
                 + l ++ ++  ++++DEa rl ++ +++e+   le++++
  KKY14036.1 312 HGLIDQMKKlrMLVVDEADRLLSEGHFQEVgkiLEALDK 350
                 33333222246***********98666666443555443 PP

>> UTP25  Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.23     6e+02      76      99 ..     243     266 ..     241     271 .. 0.86
   2 !   17.7   0.0   4.8e-07    0.0012     158     417 ..     290     542 ..     280     557 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.23
       UTP25  76 pkvLillptreaalevvelllkll 99 
                 p  Lil ptre a+++ ++l +l+
  KKY14036.1 243 PTALILSPTRELAHQISKHLSTLF 266
                 778************999998776 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 4.8e-07
       UTP25 158 kfyssdiiiaSPlglrliieeedkkkrdtdfLsSiEvlivdqadvlemQ.nwehvetvlkhlnkipkeshdadfsrvrmwylddqakllRQtlvfssye 255
                 ++ +++++ia P  +  +i+   +++   d +  + +l+vd+ad l     +++v ++l+ l+k   e+ d   ++      +  a++ RQ lvfs+  
  KKY14036.1 290 QLANANVVIATPGRMWEVID---NSHGLIDQMKKLRMLVVDEADRLLSEgHFQEVGKILEALDKEIIEEGDEVGKKT-----QPSARTKRQVLVFSATF 380
                 78999*******99999999...78899****************8766527899*********99888777655554.....4579999*********9 PP

       UTP25 256 tpeinslfnskleNlaGkvkvkkvvkggslekvglkvrqvFqrfd.aesivdepdarf.k..fftek.ilpqlkkssskssgiliyipsyfdfvrvrny 349
                 +  +++ +  kl+  aG++ ++++  +  l+k+  + +  F  ++ a+ +v++ ++ + +   + +   l ++   +++s+++l++  s     r+  +
  KKY14036.1 381 HKGLQQRLAGKLK--AGEMLNNQQSMEYLLKKLPFREKPKFIDVNpASQMVETLKEGVvEcgAMEKDlYLYTILL-QNSSKRTLVFTNSISATKRIASF 476
                 9999999977775..788888888888899999999999999998533344443333213112222213444444.78899****************** PP

       UTP25 350 lkeekvsfaaiseysskkevsraRelFfkgkkkvlLyteRlhffrRykikgvkkvilYklPenpefys 417
                 l++ k+   a++ + ++k   r  e F+ +  + l+ t+ +   r  +ikg+  ++ Y++P  + +y 
  KKY14036.1 477 LQNLKLPSHALHSSMEQKARLRSIERFTASAGSTLIATDVAA--RGLDIKGIGLIVHYHVPRTADMYV 542
                 ****999999*9999999999999***************886..99*****************99995 PP

>> Octopine_DH  NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.5e-05      0.12       9      65 ..     290     359 ..     287     389 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.5e-05
  Octopine_DH   9 tLsnvNpiiHppaallnl.............srie..etegdfslyyegitpsvaevlealdeErlaiakal 65 
                   L n+N +i +p++++ +                +    ++  +l+ eg  ++v+++leald+E+++ ++++
   KKY14036.1 290 QLANANVVIATPGRMWEVidnshglidqmkkL--RmlVVDEADRLLSEGHFQEVGKILEALDKEIIEEGDEV 359
                  699***************99999888666552..14433334468*******************99766655 PP

>> Cucumopine_C  Cucumopine synthase C-terminal helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00015       0.4      20      58 ..     426     464 ..     418     486 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
  Cucumopine_C  20 peeikalhkGevpsgaGskgqylstlvfangelRtlgye 58 
                   ++ ++ l++G v+ ga  k+ yl t+++ n+  Rtl  +
    KKY14036.1 426 SQMVETLKEGVVECGAMEKDLYLYTILLQNSSKRTLVFT 464
                   677999*****************************9754 PP

>> Dicty_REP  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.6   0.00021      0.53     225     319 ..      55     150 ..      45     178 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00021
   Dicty_REP 225 lekeesdieqesiesentqrensqpskeknkttttttttttttsqartrkrka..idddklsenqakekkknskksdddpqsdfskkssrksgslkd 319
                 le e  d+e++  e+ n  + +++ sk++ +t t+t   t t +q++ + ++    +dd++ en  ++kk++ ++s +++q+  + + +++ ++ + 
  KKY14036.1  55 LE-EVDDVEVIRTETGNGVKFRTKASKSDPATSTSTPAPTDTSTQTVDEESEWsgFGDDSPLENDVPKKKQSRQRSGEETQQISKGILKKNHDNSTF 150
                 55.5567889999999***********9999999998877777777777665411689******************999976666666665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.51
# Mc/sec: 4307.28
//
Query:       KKY14037.1  [L=412]
Description: putative 4-hydroxyphenylpyruvate dioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-20   72.5   1.3    1.1e-14   54.7   0.0    2.3  2  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    1.9e-10   41.0   0.3    7.4e-05   23.0   0.0    2.5  2  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
    1.3e-05   25.4   0.9       0.29   11.2   0.0    3.8  3  Glyoxalase_3  Glyoxalase-like domain
    0.00013   22.2   1.8     0.0013   18.9   0.9    2.6  2  Glyoxalase_5  Hydroxyphenylpyruvate dioxygenase, HPPD, N-term


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.3   1.5e-06    0.0069       2     105 ..      35     150 ..      34     161 .. 0.76
   2 !   54.7   0.0   2.5e-18   1.1e-14      10     127 ..     221     364 ..     210     365 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.5e-06
                 EEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCC...........BSC.....TSEEEEEEEEEH CS
  Glyoxalase   2 idhvallvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkk...........iee.....tvhhvafialdv 84 
                  dhv  +vg+++++++FY   +Gf+ +   +   et++ +ia   + +g++ +vl ++  +a+ +v +           + +     ++  v  +a++v
  KKY14037.1  35 YDHVHWYVGNAKQAASFYVTRMGFERIAYRG--LETGSRDIASHVVRNGKVIFVLSSPLRNAE-SVSQlnseeervvreM-HahqerHGDAVKDVAFSV 129
                 69*****************************..677777777777777777666655544444.4445566667776652.144678899999999999 PP

                 CHHHHHHHHHHHTTGEEEEEE CS
  Glyoxalase  85 edvgkaldrlkeagvkvvaep 105
                 e+v + ++ +  +g   vaep
  KKY14037.1 130 ENVRAVYEAAVTNGAVSVAEP 150
                 999999999999997666665 PP

  == domain 2  score: 54.7 bits;  conditional E-value: 2.5e-18
                 SHHHHHHHHHHHHHTSEEEEEEEE...EESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSC.....TSEEEEEEEEEHCHHHHHHHHHHHTTGE CS
  Glyoxalase  10 gdleksldFYtkvLGfklvkktdn...teeteglriaffhaggghielvlneapsgaakhvkkiee.....tvhhvafialdvedvgkaldrlkeagvk 100
                 +++++ +++Y+k+LGf+ ++ +d+    +  + l++ ++ + +++i++++ne++ g++k++  iee      ++++++ial ++++++ +  l+e+g++
  KKY14037.1 221 SEMDAVCEYYEKALGFHRFWSIDDkdiCTDFSALKSVVMSSADDKIKMPINEPAYGKRKSQ--IEEyvdfyDGAGIQHIALRTDNIIRDVTNLRERGIE 317
                 679999*****************87554444******************************..554677889*************************** PP

                 EEEEEECHHCTEEEEE....................EEEETTSEEEE CS
  Glyoxalase 101 vvaepgrhyfgalysf....................yfrDpdGille 127
                 + ++p+ +y ++ +                      + +D++G+ll+
  KKY14037.1 318 FITVPDSYYVTMKERLtrqgmkvdedlatlqelgilIDFDEGGYLLQ 364
                 ************99778888888888888888888888888888887 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   3.9e-06     0.017       1      96 [.      36     149 ..      36     160 .. 0.74
   2 !   23.0   0.0   1.6e-08   7.4e-05      10      96 ..     223     321 ..     221     332 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.9e-06
                   EEEEEE-S-HHHHHHHHHH.TT-EESS--E.EET..TTTEEEEEEEETTEEEEEEEESSTT...........-THHH..........TS-EEEEEEE CS
  Glyoxalase_4   1 dQigivVeDleaavarfsallGvgpwqryrdepq..evdlafallgsgsvqieLieplegp...........eflae..........hgeglhhlay 74 
                   d++ + V + ++a+ ++ + +G++ +     e    ++  +++++g+  v   L +pl+++                          hg  +  +a+
    KKY14037.1  36 DHVHWYVGNAKQAASFYVTRMGFERIAYRGLETGsrDIASHVVRNGK--VIFVLSSPLRNAesvsqlnseeeR---VvremhahqerHGDAVKDVAF 127
                   69*********************976554445440055555555555..777899999988555555544541...05555556778********** PP

                   EES-HHHHHHHHCTTTEEEEEE CS
  Glyoxalase_4  75 wvddldaavarleeqGfevvqk 96 
                    v+++ a+ +++  +G+  v +
    KKY14037.1 128 SVENVRAVYEAAVTNGAVSVAE 149
                   ************9999876655 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 1.6e-08
                   HHHHHHHHHH.TT-EESS--E.EE.....TTTTEEEEEEEETTEEEEEEEESSTT..-THHH.....TS-EEEEEEEEES-HHHHHHHHCTTTEEEE CS
  Glyoxalase_4  10 leaavarfsallGvgpwqryrdep.....qevdlafallgsgsvqieLieplegp..eflae.....hgeglhhlaywvddldaavarleeqGfevv 94 
                   ++a  ++++++lG++ ++ + d++     +  +  ++ + + +++    ep  g+  + ++e      g+g++h+a+++d++ ++v +l+e+G+e++
    KKY14037.1 223 MDAVCEYYEKALGFHRFWSIDDKDictdfSALKSVVMSSADDKIKMPINEPAYGKrkSQIEEyvdfyDGAGIQHIALRTDNIIRDVTNLRERGIEFI 319
                   6788899*******9999999988333333556667777776688887888888888777778889*****************************98 PP

                   EE CS
  Glyoxalase_4  95 qk 96 
                     
    KKY14037.1 320 TV 321
                   64 PP

>> Glyoxalase_3  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.2    0.0007       3.1       2      99 ..      36     143 ..      35     177 .. 0.65
   2 ?    1.6   0.0     0.057   2.6e+02       1      25 [.     208     237 ..     208     238 .. 0.87
   3 !   11.2   0.0   6.6e-05      0.29      71     102 ..     287     322 ..     265     348 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0007
  Glyoxalase_3   2 DHvvlavpdleeaaarfarrlGftvt.pggehp.glgtaNalvmfgdgYlElla.vdpeap.....aperprlfgld....rlakgeglhtlalrtd 86 
                   DHv  +v++ ++aa+ + +r+Gf+ +  +g  + +  +a ++v+ g+  + +l+ +  +a+       e++r ++ +    +  +g+ ++++a++++
    KKY14037.1  36 DHVHWYVGNAKQAASFYVTRMGFERIaYRGLETgSRDIASHVVRNGK-VIFVLSsPLRNAEsvsqlNSEEERVVR-EmhahQERHGDAVKDVAFSVE 130
                   9**********************977433433314444444444333.444554354444446665223333332.234333336888889999999 PP

  Glyoxalase_3  87 didataarlraaG 99 
                   ++ a+++++  +G
    KKY14037.1 131 NVRAVYEAAVTNG 143
                   8888888888777 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.057
  Glyoxalase_3   1 lDHvvlavp.....dleeaaarfarrlGft 25 
                   lDH+ ++v+     ++++  ++++++lGf+
    KKY14037.1 208 LDHIDHCVGnqdwsEMDAVCEYYEKALGFH 237
                   79999999877788899************8 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 6.6e-05
  Glyoxalase_3  71 rlakgeglhtlalrtddidataarlraaGvd....e 102
                   ++ +g g+ ++alrtd+i +++ +lr++G++    +
    KKY14037.1 287 DFYDGAGIQHIALRTDNIIRDVTNLRERGIEfitvP 322
                   5668*************************9765552 PP

>> Glyoxalase_5  Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.9   2.8e-07    0.0013       8     125 ..      33     177 ..      30     184 .. 0.62
   2 ?   -1.9   0.0      0.78   3.5e+03      29      55 ..     291     320 ..     279     330 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.8e-07
  Glyoxalase_5   8 dGfefvefaape.aealeelfeklGftavarh....rskdv..tlyrqGginfil.....neepdsa...........aakfarehGpsacalafrv 81 
                   +G++ v +   + ++a + +  ++Gf+++a       s+d+  ++ r+G++ f+l     n+e+ s+           ++   + hG ++  +af v
    KKY14037.1  33 NGYDHVHWYVGNaKQAASFYVTRMGFERIAYRgletGSRDIasHVVRNGKVIFVLssplrNAESVSQlnseeervvreMHAHQERHGDAVKDVAFSV 129
                   5788887665551555556668899999985422225777733578999999986444444444333111111111113445678************ PP

  Glyoxalase_5  82 kdakkayeralekGakpveke....tgvmelkiPaikGiGgsllylvd 125
                   ++ +++ye a+++Ga +v+++     +   + +  i+  G+++  l++
    KKY14037.1 130 ENVRAVYEAAVTNGAVSVAEPrmihDDFGVVWMAMIQTYGQTTHTLIE 177
                   **************9998765111133344556666666666666665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.78
  Glyoxalase_5  29 klGftavarhrs...kdvtlyrqGginfil 55 
                     G +++a       +dvt  r  gi+fi+
    KKY14037.1 291 GAGIQHIALRTDniiRDVTNLRERGIEFIT 320
                   556666654332122789999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      628  (0.0350271); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.51
# Mc/sec: 2422.60
//
Query:       KKY14038.1  [L=975]
Description: putative assimilatory sulfite reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-63  214.1   0.0    2.8e-63  213.5   0.0    1.3  1  FAD_binding_1    FAD binding domain
    1.9e-09   38.1   0.0    5.2e-09   36.7   0.0    1.7  1  NAD_binding_1    Oxidoreductase NAD-binding domain
    2.2e-07   31.1   0.1    8.3e-07   29.2   0.0    1.9  2  POR              Pyruvate ferredoxin/flavodoxin oxidoreductas
    4.3e-06   27.0   0.1    1.7e-05   25.0   0.1    2.0  2  PFOR_II          Pyruvate:ferredoxin oxidoreductase core doma
  ------ inclusion threshold ------
      0.094   12.6   0.1       0.31   10.9   0.1    1.9  1  Transketolase_C  Transketolase, C-terminal domain


Domain annotation for each model (and alignments):
>> FAD_binding_1  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.5   0.0   7.8e-67   2.8e-63       2     222 .]     584     796 ..     583     796 .. 0.98

  Alignments for each domain:
  == domain 1  score: 213.5 bits;  conditional E-value: 7.8e-67
                    --BTTB-EEEEEEEEEE---.-SS--EEEEEEE-TTBT----TT-EEEE-----HHHHHHHHHHHT--T..T-EEEEEESSTT..S--SSSSSEEH CS
  FAD_binding_1   2 pfdakkvflakvlknreLtkpesernvihveldisdsglkYetGdhlgvypsNneelVeellellgldpkadevvelkaldeesaekeprleptTl 97 
                    p+  ++ f+++v++nr+Lt+ +++rn++h+e+d+ ++glkY++G++lgv+++Nn+++V  +++++gl+p  de+ve+++ +     ++ + e +T+
     KKY14038.1 584 PDLPTRTFTVHVKENRRLTPVTYNRNIFHIEFDLGETGLKYDIGEALGVHAENNHDDVMSFIKFYGLNP--DEIVEVPNRE-----DQSLYENRTV 672
                    6678899**************************************************************..*********9.....79999***** PP

                    HHHHHHTB--SS---HHHHHHHGGG-SSHHHHHHHHHHHH-HHHHHTTTTT--HHHHHHHHHTT---TTS-HHHHHHHS-B---EEEEB-S-TTTT CS
  FAD_binding_1  98 rqalkyylditgppskqlleaLaefaseeeekqkLekLssdegakeykelklneartllevleefpsvklplefLlevlpqLkpRyYSiSssskvh 193
                     qal +++di+g p k+++e+Laefa+e++ek++L +L+  ega e+k+++ ++  t++++l efps++++++ ++ +++ +k+R+YSi+s +kv+
     KKY14038.1 673 YQALMQNIDIFGRPGKKFYESLAEFANEDKEKKELLALGGAEGAVEFKRRAEVDTITYADILLEFPSAHPSFHDIVRIVSPMKRREYSIASCQKVT 768
                    ************************************************************************************************ PP

                    TTEEEEEEE--EE---SSS--EE-HHHHH CS
  FAD_binding_1 194 pdevhltvvVveyetdgegrirkGvcsny 222
                    p++v l++vVv +  d++gr+r G+++ y
     KKY14038.1 769 PKSVALMIVVVGWV-DPKGRDRFGQATRY 796
                    **************.7***********98 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   1.5e-12   5.2e-09       3     100 ..     829     929 ..     827     936 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.5e-12
                    EEGGGGHHHHHHHHHHHHHCT...TCSEEEEEEEESSGC.GSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH....HSS CS
  NAD_binding_1   3 agGtGiaPvrsvlraileeak...dktkvvlvyGnrtee.dllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleells....lkk 90 
                    + GtG+aP+r+++++++ e+      + v l+ G r+++ +  y ee+e+++++   +l       r  ++++ +k ++qd+++e + +      +
     KKY14038.1 829 GLGTGLAPFRAFVQHRALEKAegkEIGSVLLYMGSRHQReEYCYGEEWEAYQAAGVITLL-----GRAFSRDQPQKIYIQDRMRESIQDivkaYIE 919
                    55*************9988334778899*********998999********555444433.....34444444457*******9988889999559 PP

                    TTEEEEEECS CS
  NAD_binding_1  91 eethvyvCGp 100
                    e+  +y+CGp
     KKY14038.1 920 EDGAFYLCGP 929
                    999******9 PP

>> POR  Pyruvate ferredoxin/flavodoxin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   2.3e-10   8.3e-07      10     119 ..     351     464 ..     346     492 .. 0.90
   2 ?   -2.5   0.0       1.2   4.5e+03      38      81 ..     524     568 ..     522     612 .. 0.67

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 2.3e-10
                 HHHHHHH.HHTT-EEEEEEEEESSSSSSCEEEEEEEESS.-SSS--TTSEEEEEESSHHHHH..HHGGGEEEEEEEEEECTCGTT-CCHHHCTS-HHHH CS
         POR  10 kilakaa.araGyyvqanreygseirGghsyshvrisdepivpsievgeadllvaldaetls..ehldglkpggiiiynseelkpdelkkakeeerelk 105
                 +ila+++  ++  +v+++ +++   +Gg+s ++vr s+++  +s++v++ad  ++ d ++ls  + ++++kp g +i+  + +k+ +++++++++++  
  KKY14038.1 351 NILAQTLaKDSSSNVTMSVTHDNVLQGGVSRTDVRKSPKSLEASYAVEAADTAIVGDVTLLSkiDIISKVKPAGNLILLLPGVKDGDVENKLPAKFQKS 449
                 67888884556689999999******************9999*******************99******************************999888 PP

                 HHH.T-EEEEE-HHH CS
         POR 106 erl.gvrvygvdatk 119
                  ++ g+r++ vd+++
  KKY14038.1 450 VAEqGIRLFLVDVER 464
                 877999999999875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
                 EEEEEEEESS.-SSS--TTSEEEEEESSHHHHH..HHGGGEEEEEE CS
         POR  38 syshvrisdepivpsievgeadllvaldaetls..ehldglkpggi 81 
                 s+++v is++++  ++   +a+  v +++e ++  ++l++ ++   
  KKY14038.1 524 SWTEVEISKDEKPLARD-VTANNFVPFHKEQIEppNQLSDWQKAAK 568
                 79999999995655555.7777777777777766677777666643 PP

>> PFOR_II  Pyruvate:ferredoxin oxidoreductase core domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.9     1e+04      59      79 ..      66      84 ..      60      91 .. 0.71
   2 !   25.0   0.1   4.8e-09   1.7e-05       4      62 ..     197     257 ..     195     288 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.9
                E-S--TT-G.-HHHHHHHHHTG CS
     PFOR_II 59 drnisfgse.Gqlveevkaalk 79
                d n    ++ Gql ++ ++a++
  KKY14038.1 66 DYNG---AKgGQLTTDYASAMS 84
                4444...344999999999986 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 4.8e-09
                 EEEE-STHH.HHHHHHHHHHHHTT--EEEEEES--BS--HHH.HHHHSTT-SEEEEEE-S- CS
     PFOR_II   4 vivamGsva.gtaksavdelReegikvGllrlrtlrPFPeee.lkellkkvkkvvvldrni 62 
                 v+v++G+v  + a ++++++ ++g k+G++ +r++rPF e+e +k +  +vk v vl + +
  KKY14038.1 197 VLVCFGTVEsSLAAQVANAAAKNGSKIGVVSVRVYRPFLEDEfIKAIPTSVKTVGVLGQVA 257
                 89*****9857788999999*******************9983466678899999885544 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   8.7e-05      0.31      14      57 ..     198     242 ..     192     277 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.7e-05
                      EEEETT.HHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHH CS
  Transketolase_C  14 lvayGs.mveealeAaeeLekegisaeVvdlrtvkplDketiles 57 
                      lv++G+ + + a ++a++++k+g ++ Vv++r  +p+ ++ + ++
       KKY14038.1 198 LVCFGTvESSLAAQVANAAAKNGSKIGVVSVRVYRPFLEDEFIKA 242
                      7788863578899***********************988876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (975 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.53
# Mc/sec: 5516.31
//
Query:       KKY14039.1  [L=222]
Description: putative protein fmp52 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-09   36.3   0.0    6.8e-09   35.9   0.0    1.2  1  NAD_binding_10  NAD(P)H-binding
     0.0018   17.8   0.0      0.011   15.3   0.0    1.9  1  Epimerase       NAD dependent epimerase/dehydratase family
     0.0041   16.7   0.0     0.0068   15.9   0.0    1.3  1  HIM1            HIM1
  ------ inclusion threshold ------
      0.032   13.8   0.2      0.058   12.9   0.0    1.5  2  NmrA            NmrA-like family


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   1.5e-12   6.8e-09       6     149 ..       2     147 ..       1     172 [. 0.79

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1.5e-12
                     HHHHHHHHHHHC-.T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES-.....--TCC....HHHH......HHHHHHH CS
  NAD_binding_10   6 vGrllvkellarg.ghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsal.....ggggk....deeg......aknivda 84 
                     vG+++++ l ++    ++ +++R+  +l+e ++++ +++ve d+++     +al+ +  V+ ++     g        d++        + +++ 
      KKY14039.1   2 VGSHILNTLRSSPlVSSIDMIARRNPQLNE-PDKKLTTLVEPDLSKWTGYFRALSPVPQVYYCAfattrG---AvggfDNQYkiehdfNIEMARE 92 
                     89999999999998778999********97.5789999**********************8888555441...145553333556666******* PP

                     HHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEE.EEEE-CEE-S CS
  NAD_binding_10  85 akeagvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwT.ivrpggLtde 149
                     ak+ag+k fvlvs++g++    +      +++   y + k   ee++++ g+d+T i+rpg +  +
      KKY14039.1  93 AKQAGIKVFVLVSSAGADP---N------SRM--GYQKIKGDIEEHVKELGFDYTvILRPGLIAGD 147
                     *****************93...2......233..78899***************934566655433 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.4e-06     0.011       9     118 ..       1     109 [.       1     188 [. 0.73

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.4e-06
                 HHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S.---HHHHHHSHHHHHHHHTHHHHHHHHHHHH CS
   Epimerase   9 fiGsalvkallekg..yevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAa.vggvaassedpadfieknlqgtlnlleaark 104
                 ++Gs++++ l +      +  ++r++ + n+  ++ ++lve dl + +   r+++   +  v+ +A      a+   d++  +++    + +++ +a++
  KKY14039.1   1 MVGSHILNTLRSSPlvSSIDMIARRNPQLNEPDKKLTTLVEPDLSKWTGYFRALS--PVPQVYYCAFaTTRGAVGGFDNQ--YKIEHDFNIEMAREAKQ 95 
                 79************95448888888767776666666***********9999999..89999999774444444444444..56667777789****** PP

                 HTCTEEEEEEEGGG CS
   Epimerase 105 agvkrllflsSsev 118
                 ag+k ++ +sS+  
  KKY14039.1  96 AGIKVFVLVSSAGA 109
                 ***********533 PP

>> HIM1  HIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.5e-06    0.0068      69     147 ..      78     152 ..      63     171 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.5e-06
        HIM1  69 rkfvdYeLnlklakeFantedKklvivTsfNnkllskvspYfrtKlklEndLktklepklkeLviLRPGPlvGehtkpi 147
                 +++++++ n+++a+e  +   K  v+v s   +  s++  Y ++K  +E+ +k+ l   ++  viLRPG + G+  +  
  KKY14039.1  78 QYKIEHDFNIEMAREAKQAGIKVFVLVSSAGADPNSRM-GYQKIKGDIEEHVKE-L--GFDYTVILRPGLIAGDREESR 152
                 6799**************************99998876.7*********99875.4..5899***********987644 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.3e-05     0.058      78     140 ..      82     139 ..      52     146 .. 0.76
   2 ?   -2.8   0.1      0.82   3.7e+03      80      95 ..     178     193 ..     152     194 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHHHHS-SEEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEEE CS
        NmrA  78 eiedgkklvdAakeaGvkhfiySslgddndrsnaeepavphfdsKaeieeyvralgipytfvy 140
                 e +   ++++ ak+aG+k f+  s + ++ +s      +   + K  iee+v++lg+ yt ++
  KKY14039.1  82 EHDFNIEMAREAKQAGIKVFVLVSSAGADPNS-----RMGYQKIKGDIEEHVKELGFDYTVIL 139
                 44556778999*********975555555455.....344456799**************875 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.82
                 HHHHHHHHHHHHHS-S CS
        NmrA  80 edgkklvdAakeaGvk 95 
                 +d   +++Aa+ aG k
  KKY14039.1 178 QDADVIAKAAVSAGLK 193
                 4555678888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 1403.37
//
Query:       KKY14040.1  [L=144]
Description: hypothetical protein UCRPC4_g06867 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.02   13.0   3.6      0.022   12.9   3.6    1.0  1  Totivirus_coat  Totivirus coat protein


Domain annotation for each model (and alignments):
>> Totivirus_coat  Totivirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   3.6   1.2e-06     0.022     634     720 ..      52     137 ..      22     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.2e-06
  Totivirus_coat 634 isgvppvsetappkkeanrtgeaglvsergaeqvsaeaetakpervargdpvrltahhaalrapqlpraggasdGgggvppppalga 720
                     + + +  s+t + +k a+++++a  +s + +e  +   + ++p+++++gdp+++ +  a++  p+ +++gga++G    +p   +ga
      KKY14040.1  52 TES-NEYSKTGSDAKAAQEGEAAFDPSTTSPEAEKDSSSSTAPDSESQGDPLEMSPGNAKASQPRDEQEGGAQKGASKSGPSSRGGA 137
                     433.3667787889999999999999999**********************************************999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       860  (0.047967); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 993.63
//
Query:       KKY14041.1  [L=251]
Description: putative proteasome component y13 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-61  205.4   0.1    6.9e-61  205.0   0.1    1.1  1  Proteasome       Proteasome subunit
    3.7e-13   48.9   0.1    8.7e-13   47.7   0.1    1.7  1  Proteasome_A_N   Proteasome subunit A N-terminal signature
  ------ inclusion threshold ------
      0.061   12.9   0.0      0.086   12.4   0.0    1.1  1  Nitrate_red_gam  Nitrate reductase gamma subunit


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.0   0.1   1.2e-64   6.9e-61       2     190 .]      29     215 ..      28     215 .. 0.98

  Alignments for each domain:
  == domain 1  score: 205.0 bits;  conditional E-value: 1.2e-64
                 HHS-EEEEEEETTEEEEEEEEEEEETTEEEESSS.STSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHC CS
  Proteasome   2 kkGttvvGikgkdgvvlaadkratagskllskst.veKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrs 99 
                 ++++t++Gi ++dg+vlaa++++t  skll+++t +eK++ i+d++++a+aG+ aDa++l+++ar+ aq++ l+y+++ip+e+lv+r+++++q+ytq++
  KKY14041.1  29 SHAGTALGILATDGIVLAAERKVT--SKLLEQDTsAEKLYTINDNMICAVAGMNADANILINYARQAAQRHLLTYNEDIPCEQLVRRLCDLKQGYTQHG 125
                 799*********************..9999999989*************************************************************** PP

                 TTTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEEE CS
  Proteasome 100 grrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievavi 190
                 g rpfgvs+++ag+d + + +Lyq +psG+y ++k a+++G +  aa+++l++ yked++l+ea+ +avk+l+++++  kls+++ie+a++
  KKY14041.1 126 GLRPFGVSFIYAGWDPQRQFQLYQSNPSGNYGGWK-ATSVGANNAAAQSLLKQDYKEDCELKEACAMAVKVLSKTMDSTKLSSEKIEFATV 215
                 **********************************8.***************************************************9986 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.1   1.5e-16   8.7e-13       1      23 []       5      27 ..       5      27 .. 0.99

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 1.5e-16
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YD+ +t+FSP+GRL+QVEYA++A
      KKY14041.1  5 YDSRTTIFSPEGRLYQVEYALEA 27
                    9*********************9 PP

>> Nitrate_red_gam  Nitrate reductase gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.4e-05     0.086      83     148 ..      23      89 ..      13     112 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.4e-05
  Nitrate_red_gam  83 yqllal.vaGliagvlalvGlllLllRRltnkrvraatsasDkvvlllLllqillGllttlvsaldy 148
                      y l+a+  aG+++g+la+ G++l   R++t+k +++ tsa  ++++   ++  ++G+ +     ++y
       KKY14041.1  23 YALEAIsHAGTALGILATDGIVLAAERKVTSKLLEQDTSAEKLYTINDNMICAVAGMNADANILINY 89 
                      45555525899*******************************9999999999999998888777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1634.91
//
Query:       KKY14042.1  [L=548]
Description: putative ff domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-13   49.2   7.2    1.4e-08   34.8   0.2    3.6  3  FF        FF domain
    3.5e-09   36.6   2.6    3.5e-09   36.6   2.6    3.1  3  WW        WW domain


Domain annotation for each model (and alignments):
>> FF  FF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.2   1.6e-12   1.4e-08       3      49 ..     275     322 ..     273     324 .. 0.93
   2 !   12.1   2.6   1.9e-05      0.17       5      51 .]     347     392 ..     343     392 .. 0.94
   3 ?    2.6   0.0     0.017   1.6e+02      15      47 ..     418     449 ..     406     453 .. 0.83

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.6e-12
                 HHHHHHHHHHCSSS-TTSSHHHHHH..HCTTSCCCHHGTSHHHHHHHHH CS
          FF   3 reaFkeLLkehkeitpkstWseikk..ilenDpRYlalldkseReelFe 49 
                  + F+ LL++ + i+p++tW+++++  ++++D+RY  l+++  R+++F 
  KKY14042.1 275 IALFRDLLDDFH-INPYTTWEKVVEegRIIEDDRYVLLPNMHFRRDVFH 322
                 578*********.************999*****************9996 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHCSSS-TTSSHHHHHHHCTTSCCCHHG.TSHHHHHHHHHHH CS
          FF   5 aFkeLLkehkeitpkstWseikkilenDpRYlal.ldkseReelFedy 51 
                 a+  +L eh   tpk  W e+k++++++p+ +   ld+++Re+l+ d+
  KKY14042.1 347 AYVRFLAEHA--TPKLYWPEFKRKFKKEPEMKDTkLDDKTREKLYRDH 392
                 7889999998..***********************************9 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.017
                 SS-TTSSHHHHHHHCTTSCCCHHGTSHHHHHHH CS
          FF  15 eitpkstWseikkilenDpRYlalldkseReel 47 
                  ++++st  ++ +++  D R+  l ++++R +l
  KKY14042.1 418 SLNKSSTIATLPPAIVTDLRFISL-PAKTRDSL 449
                 599999999999************.88888766 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   2.6   3.9e-13   3.5e-09       1      31 []      14      43 ..      14      43 .. 0.98
   2 ?    2.7   0.1     0.016   1.4e+02       3      31 .]     118     145 ..     117     145 .. 0.87
   3 ?   -0.4   0.1      0.14   1.3e+03      22      30 ..     287     295 ..     286     295 .. 0.77

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 3.9e-13
                X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW  1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31
                LPpGW e++ p+ G  YYyN +T++++  +P
  KKY14042.1 14 LPPGWTEHKAPT-GHLYYYNAQTKQSTYNRP 43
                8***********.****************99 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.016
                 TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   3 pGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 ++W+ ++++  Gr + yN+  +e+ W  P
  KKY14042.1 118 EPWILVKTRY-GRRFIYNPIQNESFWKFP 145
                 5788888887.*************99877 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.14
                 TT--EESS- CS
          WW  22 eTgetqWek 30 
                  ++ t+Wek
  KKY14042.1 287 INPYTTWEK 295
                 5677****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       894  (0.0498633); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.53
# Mc/sec: 3135.65
//
Query:       KKY14043.1  [L=823]
Description: putative phd finger domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-24   85.4   0.0    6.1e-24   84.7   0.0    1.4  1  SPOC         SPOC domain
    3.9e-20   72.4   0.2    8.5e-20   71.3   0.2    1.6  1  TFIIS_M      Transcription factor S-II (TFIIS), central domai
    1.6e-10   40.7  12.7    2.8e-10   39.9  12.7    1.4  1  PHD          PHD-finger
  ------ inclusion threshold ------
       0.18   12.0   0.9        0.7   10.1   0.3    2.2  2  DUF4734      Domain of unknown function (DUF4734)
          9    6.3   9.7       0.92    9.5   4.8    1.8  2  Prok-RING_1  Prokaryotic RING finger family 1


Domain annotation for each model (and alignments):
>> SPOC  SPOC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   1.7e-27   6.1e-24       4     149 ..     513     669 ..     510     671 .. 0.91

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 1.7e-27
                 XXXXX---EEEEEETTEEEEEEEEEE---------........-SEEEE-EEEEHHHHHHHHHH-S.....EEEEEEEE.ESSGGGHHHHHHHHHHHHT CS
        SPOC   4 asklpvvWqGalslksvssfqvqahllsgdrslvs........pslLritqRlrldqvkkyldevsrritadllavalf.psdesdesgfaelvdYLks 93 
                  ++ ++vW+G+l++  ++ f+  a++  g +++ +        p  + i++R++++ +  yl++++ + t+d+ +va+  p++ +++++f++l+ Y+k+
  KKY14043.1 513 TQDPEIVWNGRLDMEPIAGFRGLAKFTAGANAQGLglswdtllPANISINGRIDTKRADAYLCGLRYSNTTDVIVVAIRaPDHPTERESFDKLFMYFKE 611
                 7999*****************************6655665556777***********************99*****9999******************* PP

                 TTEEEE.....EE-TTS-EEEEE-S.........STHHHHTS.......-----SSEEEEEE CS
        SPOC  94 KqraGvvnlnksglnqngvlyifPpga......lcefaesllresapelekskddhLlivvv 149
                 ++r+Gv  + k+ l  ++++yi P++a      ++ef++ l +  +++   ++d++Lliv+v
  KKY14043.1 612 RDRYGV--VAKHALSAVKDTYIMPIEAgatndqKPEFLQLLDNDNIES--PNPDRLLLIVFV 669
                 ******..*****************99******88***9999888886..777888888876 PP

>> TFIIS_M  Transcription factor S-II (TFIIS), central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.2   2.4e-23   8.5e-20       4     111 ..     240     359 ..     237     360 .. 0.90

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 2.4e-23
                 HHHHHHHHHHHTT---...-.............--THHHHHHHHHHHHHH..HT------HHHHHHHHHHHHHS-TT-HHHHHTSSSS--STTTTS--- CS
     TFIIS_M   4 RdkcrelLaealeedsseaee............eedveelaaeiEealfe..kekkstdkkykqkvrslvfNLkdkkNpeLrrrvlsgeispeklvkms 88 
                 R++++++L + + e+++ a++            +  +++l +++E+a+f      ++ ++ yk+++r+++ N+k  +N++Lr+r+l g++ p  l+ ms
  KKY14043.1 240 RKSAAKALVKLFSEQIKAAQKtgsytpkeehvpTAVANDLGVAVEHAMFAslVGSGDLNESYKTQLRTILHNVK--SNTTLRDRILAGDLLPHALAVMS 336
                 8999999999999999888778999998766655599999999*******99556788999************6..*********************** PP

                 TTTSS-HHHHHHHHHHHHHHHHT CS
     TFIIS_M  89 peElaseelkeereklekealee 111
                  e++asee+++ +++l+ ea ++
  KKY14043.1 337 VEDMASEEQQQRDAALKAEAEKQ 359
                 *******************9887 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9  12.7   7.8e-14   2.8e-10       1      51 [.      54     105 ..      54     106 .. 0.93

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 7.8e-14
                 SBTTTTS...TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   1 rCavCkk...ksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 rC vC++   ++dee+++++Cd+C+ w+H++C+ +p ++++ p+ +++Ce+C++
  KKY14043.1  54 RC-VCGQyeeEEDEERDMICCDECSAWQHNDCMLLPYSTANAPD-QYFCEQCRP 105
                 69.****9988888************************999987.*******97 PP

>> DUF4734  Domain of unknown function (DUF4734)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3   0.00019       0.7      24      62 ..      45      84 ..      25      91 .. 0.75
   2 ?   -1.3   0.0       0.7   2.5e+03       3      25 ..     769     791 ..     767     806 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00019
     DUF4734 24 yedkeeg.lsalleklekekpqeReWiydegcpyHhdikc 62
                 +++ e+ ++    ++e+e+++eR+ i++++c+ +++++c
  KKY14043.1 45 EANEAEEiIRCVCGQYEEEEDEERDMICCDECSAWQHNDC 84
                33333336888899*******************9999998 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.7
     DUF4734   3 lelpevqslinealsystalmye 25 
                 +++p vq+li++a +  +a m  
  KKY14043.1 769 IKTPAVQQLIYQAPNVGVAEMNV 791
                 78999*****9998877777655 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   4.8   0.00026      0.92      11      34 ..      61      84 ..      51      88 .. 0.75
   2 ?   -3.4   0.2       2.7   9.6e+03      22      32 ..      99     109 ..      93     110 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00026
  Prok-RING_1 11 gkelkeedDiVvCpeCgtpyHraC 34
                 ++e +ee D++ C+eC + +H +C
   KKY14043.1 61 EEEEDEERDMICCDECSAWQHNDC 84
                 33445569**************** PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.7
  Prok-RING_1  22 vCpeCgtpyHr 32 
                   C +C    H+
   KKY14043.1  99 FCEQCRPEDHK 109
                  58888777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (823 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1299  (0.0724525); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.87u 0.37s 00:00:01.24 Elapsed: 00:00:00.56
# Mc/sec: 4392.47
//
Query:       KKY14044.1  [L=297]
Description: putative coiled-coil domain-containing protein 16 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.8e-05   22.8   0.0    0.00013   22.1   0.0    1.4  1  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
     0.0041   17.6   4.0     0.0041   17.6   4.0    3.3  3  bZIP_Maf     bZIP Maf transcription factor
  ------ inclusion threshold ------
      0.021   15.2   0.1      0.035   14.5   0.1    1.4  1  zf-met       Zinc-finger of C2H2 type
      0.089   13.2   0.2      0.089   13.2   0.2    2.5  3  OrsD         Orsellinic acid/F9775 biosynthesis cluster prote
       0.17   12.3   0.2       0.34   11.3   0.2    1.5  1  zf-C2H2_2    C2H2 type zinc-finger (2 copies)


Domain annotation for each model (and alignments):
>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   3.6e-08   0.00013       1      27 []      29      55 ..      29      55 .. 0.96

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.6e-08
                 ECBBTTTTBBBSSHHHHHCCTTSHHHH CS
  zf-C2H2_jaz  1 qfYCvlCdKyFksenaldnHlkSKkHK 27
                 q+ C +Cd   ks++ ++ Hl+S +H+
   KKY14044.1 29 QLNCTVCDLFIKSASLWEGHLRSANHR 55
                 789***********************7 PP

>> bZIP_Maf  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   2.0      0.72   2.6e+03      43      82 ..      69     108 ..      51     118 .. 0.63
   2 ?    0.4   2.3      0.26   9.4e+02      43      74 ..     195     223 ..     191     232 .. 0.58
   3 !   17.6   4.0   1.1e-06    0.0041      21      73 ..     228     280 ..     217     293 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.72
    bZIP_Maf  43 kscrkrrlqqkeelekekeeleeelerlqqelsrlrqekd 82 
                  + +kr+ ++++++ ++++++  + e++  e +++    d
  KKY14044.1  69 NQTKKRKNDDSDDDSRKRSRAVSSGEESPSESKEQDIPAD 108
                 5566777777777777777776666666666555555555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.26
    bZIP_Maf  43 kscrkrrlqqkeelekekeeleeelerlqqel 74 
                 ++ ++rr ++  e+e+ekee e++le   +el
  KKY14044.1 195 QKDAERRPTKDIEAEEEKEEEERRLE---EEL 223
                 56667777776666666666655554...344 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 1.1e-06
    bZIP_Maf  21 lteeeverLKqrRRrlKNrgyakscrkrrlqqkeelekekeeleeelerlqqe 73 
                   ee v rLKq+R +l+N+ +   +r + l+++ e+++  +el +++   q+ 
  KKY14044.1 228 EMEERVRRLKQKRATLRNSTASTASRPKTLSETIEVASDATELDRKQVGPQED 280
                 56899**********************************99999887655555 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   9.8e-06     0.035       3      25 .]      32      54 ..      30      54 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9.8e-06
      zf-met  3 CelCnvtfnsesqlksHlqGKkH 25
                C +C+   +s s ++ Hl++  H
  KKY14044.1 32 CTVCDLFIKSASLWEGHLRSANH 54
                ********************988 PP

>> OrsD  Orsellinic acid/F9775 biosynthesis cluster protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   2.5e-05     0.089      14      66 ..      32      84 ..      22      99 .. 0.73
   2 ?   -2.7   0.0       2.1   7.7e+03      56      82 ..     112     138 ..      98     148 .. 0.57
   3 ?   -0.1   0.3      0.35   1.3e+03      44      76 ..     228     259 ..     192     278 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.5e-05
        OrsD 14 CreCkyavlp.selerHLrkrhrqlkrektqelletvehemslrqldelareae 66
                C+ C   +   s +e HLr+  +  + ++ +++  +++++ ++r+ d+ + ++ 
  KKY14044.1 32 CTVCDLFIKSaSLWEGHLRSANHRKNAQRATQITPAINQT-KKRKNDDSDDDSR 84
                99******997789*****999999999999******554.4444443333333 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.1
        OrsD  56 rqldelareaeavslpsaesepipgLp 82 
                 ++++ ++  +ea++  + e +p+ + p
  KKY14044.1 112 KKVKSVTFAEEAIKKTDSEPQPVTQAP 138
                 444444444555555555555555444 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.35
        OrsD  44 elletvehemslrqldelareaeavslpsaese 76 
                 e+ e v + +++r     + +a+ +s+p++ se
  KKY14044.1 228 EMEERVRRLKQKRATL-RNSTASTASRPKTLSE 259
                 3333343322222211.1233333344444444 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   9.4e-05      0.34      48      81 ..      27      60 ..       9      73 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.4e-05
   zf-C2H2_2 48 eekleClyCekefkslealreHmkkkgHckinee 81
                + +l+C +C+   ks +  + H+++++H+k +++
  KKY14044.1 27 SGQLNCTVCDLFIKSASLWEGHLRSANHRKNAQR 60
                45799****99999***************97554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2278  (0.127057); expected 358.6 (0.02)
Passed bias filter:                      645  (0.0359752); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.89u 0.38s 00:00:01.27 Elapsed: 00:00:00.58
# Mc/sec: 1535.31
//
Query:       KKY14045.1  [L=521]
Description: putative protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-48  163.5   0.0    5.4e-46  157.1   0.0    2.2  1  Pkinase         Protein kinase domain
    3.3e-24   85.6   0.0    2.7e-23   82.6   0.0    2.0  1  Pkinase_Tyr     Protein tyrosine kinase
    4.2e-05   23.0   0.0      6e-05   22.5   0.0    1.2  1  Kinase-like     Kinase-like
     0.0033   17.4   2.6     0.0048   16.8   0.2    2.0  2  APH             Phosphotransferase enzyme family
     0.0036   16.7   0.0     0.0059   16.0   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.011   14.7   0.0      0.015   14.2   0.0    1.2  1  Haspin_kinase   Haspin like kinase domain
      0.047   12.5   0.0       0.07   11.9   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.1   0.0   2.1e-49   5.4e-46       2     256 ..      21     248 ..      20     259 .. 0.87

  Alignments for each domain:
  == domain 1  score: 157.1 bits;  conditional E-value: 2.1e-49
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeea 100
                 + l+ +G+G+fGkV  + +k++g ++A+K i+k++ + ++             ++h +++   +v++    ly+v+++++gg+l  +++ +++++e+ +
  KKY14045.1  21 RLLRVVGKGAFGKVRIVERKDSGLTFALKYIRKDEGNLTS----------YSATSHGKLL--TGVVQ----LYIVVDLMNGGDLRFHIS-RKTFTEDAV 102
                 56789***************************99776544..........5677787764..46665....9****************8.599****** PP

                 HHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTT CS
     Pkinase 101 kkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsg 199
                 ++++ ++  +l+y+H++gi+HrDlKp+N+L+d++g++ ++DF +a+ ++ ++ l s  gt  YlAPEv ++++y ++vD+WslGv++ye ++ k pf g
  KKY14045.1 103 RFWMGELGCALRYIHKQGIVHRDLKPDNVLLDSEGHVHLADFNVASDFKPGKLLYSKSGTLAYLAPEVFEGSGYLNEVDWWSLGVTFYECIYSKRPFDG 201
                 **************************************************************************************************6 PP

                 SSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHH CS
     Pkinase 200 ekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltae 256
                 +++++  +++++           +   + +   +s  +++ l++ll+kd+kkR++a+
  KKY14045.1 202 RSHEQ-LSENIKA---------GSPRYYVTSPPVSMPCLHALTSLLEKDRKKRIGAN 248
                 66665.4444444.........223445556678********************964 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0     1e-26   2.7e-23       3     223 ..      22     216 ..      20     248 .. 0.80

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 1e-26
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                  l + +G+GafGkV   + k    ++ ++ a+K ++++  +         ++  ++++h ++  l+gv+     l+iv+++++gGdL+ ++ +k   ++
   KKY14045.1  22 LLRVVGKGAFGKVRIVERK----DSGLTFALKYIRKDEGN---------LTSYSATSHGKL--LTGVVQ----LYIVVDLMNGGDLRFHISRK---TF 97 
                  5677888888888877776....77888888888443332.........344455566665..467776....9****************998...77 PP

                  BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEi 198
                  t + +  ++ ++ ++++y++++ +vHrdl   NvLl+++ +v ++Df +a+d +  +  ++k+     + ++apE+++ + +  + D Ws Gv+ +E 
   KKY14045.1  98 TEDAVRFWMGELGCALRYIHKQGIVHRDLKPDNVLLDSEGHVHLADFNVASDFKPGKLLYSKS---GTLAYLAPEVFEGSGYLNEVDWWSLGVTFYEC 192
                  77777777889******************************************6666666555...5689***************************9 PP

                  HTTSSGTTTTSHHHHHHHHHHTTEE CS
  Pkinase_Tyr 199 ftlgespypglkneevleklkegkr 223
                  +  +++p+ g ++e++ e++k+g  
   KKY14045.1 193 IY-SKRPFDGRSHEQLSENIKAGSP 216
                  98.9****************98864 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   2.4e-08     6e-05     159     260 ..     115     209 ..      89     244 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2.4e-08
  Kinase-like 159 nLqakglvhgkftvdnllldekgglmlggftaLv..ragtkvvlseve.kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltla 253
                  +++++g+vh ++++dn+lld +g + l +f+     + g+    s+    ++  pE++    gy +        ++d W lG++ y     k P++  
   KKY14045.1 115 YIHKQGIVHRDLKPDNVLLDSEGHVHLADFNVASdfKPGKLLY-SKSGtLAYLAPEVFEG-SGYLN--------EVDWWSLGVTFYECIYSKRPFDGR 202
                  7899**************************8765115555544.4444467777777766.35544........89***********999999*9998 PP

  Kinase-like 254 teeakee 260
                    e  +e
   KKY14045.1 203 SHEQLSE 209
                  8777666 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.2   1.9e-06    0.0048     153     193 ..     109     144 ..      91     149 .. 0.72
   2 ?   -0.0   0.2      0.27   6.8e+02     117     150 ..     290     325 ..     262     342 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.9e-06
                 HHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE--- CS
         APH 153 laalaallpgelptvllHgDlhpgNllvdpddgrvtGviDf 193
                 l + ++  +   +++++H+Dl+p+N+l+d++++    + Df
  KKY14045.1 109 LGCALRYIH---KQGIVHRDLKPDNVLLDSEGHVH--LADF 144
                 555566666...699**************665444..5555 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.27
                 SHHCHTCCHHHHHHCHHHCCCGCCTCC..HHHHHHH CS
         APH 117 dflaqdlellrqlesatarllaselld..lleelee 150
                 d ++  le+++++++a+++++++el+d   + e++e
  KKY14045.1 290 DLEELLLEEAPLEARARRQKPRAELKDdaTQKEIRE 325
                 344455556666666666888888888554444444 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.3e-06    0.0059     104     167 ..      87     145 ..      75     154 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.3e-06
         Kdo 104 dLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 dL  ++ + +++ e   r  + ++g + + +h+ g+ H+dl + n+ll+ e+    ++ l D++
  KKY14045.1  87 DLRFHISR-KTFTEDAVRFWMGELGCALRYIHKQGIVHRDLKPDNVLLDSEG----HVHLADFN 145
                 56655554.5566666677778999**************************9....99999986 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0     6e-06     0.015     230     255 ..     123     148 ..      74     177 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6e-06
  Haspin_kinase 230 HRdLhldniLvdknlnvtlidlklsR 255
                    HRdL+ dn+L+d++++v l d+ ++ 
     KKY14045.1 123 HRDLKPDNVLLDSEGHVHLADFNVAS 148
                    **********************9874 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.7e-05      0.07     319     388 ..     113     173 ..     111     190 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.7e-05
  Pkinase_fungal 319 hrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkg 388
                     +r  + k+gi+HrD   +N+l+      +e +  L+D+++a++ +     +    + GTl+++a ev +g
      KKY14045.1 113 LRYIH-KQGIVHRDLKPDNVLLD-----SEGHVHLADFNVASDFKPG---KLLYSKSGTLAYLAPEVFEG 173
                     56677.99**************9.....788999*********9953...2336799****999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.54
# Mc/sec: 2905.26
//
Query:       KKY14046.1  [L=671]
Description: putative g1 s regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-42  142.5   0.5    2.4e-41  140.9   0.0    2.1  2  Dfp1_Him1_M     Dfp1/Him1, central region
    9.9e-20   70.4   0.5    2.9e-19   68.9   0.3    1.9  2  zf-DBF          DBF zinc finger
  ------ inclusion threshold ------
      0.037   14.0   0.0      0.077   13.0   0.0    1.5  1  PTCB-BRCT       twin BRCT domain
       0.32   11.2   5.9      0.088   13.0   1.6    2.3  2  RFX1_trans_act  RFX1 transcription activation region


Domain annotation for each model (and alignments):
>> Dfp1_Him1_M  Dfp1/Him1, central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.9   0.0   5.4e-45   2.4e-41       1     126 [.     252     379 ..     252     380 .. 0.95
   2 ?   -2.0   0.3      0.89     4e+03      46      87 ..     395     440 ..     381     444 .. 0.48

  Alignments for each domain:
  == domain 1  score: 140.9 bits;  conditional E-value: 5.4e-45
  Dfp1_Him1_M   1 dilskArelkmkiWsleKlqrvLknllekdsekkkakaaakskaa...keeedLsqlLkneklyGpsdrdptakrkdlhyFkgpyvlveDleqelrpi 95 
                  dil++Ar+++mkiW+leKlqr+++++++ ++++ ++++++++++    ++e+dLsqlL++e+++Gp++rdp +++kd+++Fkgp++l++D++++ +p+
   KKY14046.1 252 DILTRARQMGMKIWALEKLQRIIATVTSGTDAQFSHTTRGNAATMpsrTKEDDLSQLLRKERMNGPAERDPLVATKDIVHFKGPFILIRDMDEKNKPV 349
                  9***************************999999888888777668999************************************************* PP

  Dfp1_Him1_M  96 ivreykkeakkekdgewPvlrsttegrcpFv 126
                  +vrey+k ak++ dg+wP++rs++ g+cpF 
   KKY14046.1 350 MVREYPKAAKRQ-DGTWPQFRSAPIGKCPFL 379
                  *****8887777.*****************7 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.89
  Dfp1_Him1_M  46 keeedLsqlLkneklyG..psdrdptak.rkdlhyF.kgpyvlveD 87 
                  +e+e+ +  +++e+l+   p  r +ta  + d  ++  +++v veD
   KKY14046.1 395 EERERRKGAMQKERLQNqaPVTRSQTADaKPDRSVWqDEQHVQVED 440
                  3344444556666665433344444443133444444566666665 PP

>> zf-DBF  DBF zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.93   4.2e+03      19      31 ..      30      42 ..      29      44 .. 0.89
   2 !   68.9   0.3   6.6e-23   2.9e-19       1      43 [.     624     666 ..     624     668 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.93
      zf-DBF 19 HlksekHrkFaen 31
                H++   Hr+ a+n
  KKY14046.1 30 HVTNSPHRSLAQN 42
                999******9987 PP

  == domain 2  score: 68.9 bits;  conditional E-value: 6.6e-23
      zf-DBF   1 kksGYCEnCrvkfedleeHlksekHrkFaenssnfeelDelis 43 
                 +k+GYCEnCr+kf+d+eeH  s+kHrkFa +++n++elD+l+ 
  KKY14046.1 624 PKPGYCENCRDKFDDFEEHTFSRKHRKFAATHTNWTELDALLR 666
                 59**************************************986 PP

>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.7e-05     0.077       3      42 ..     167     206 ..     165     212 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.7e-05
                 EEEECB-TTCHHHHHHHHHHTT-EEESSEETT-SEEEECS CS
   PTCB-BRCT   3 icvtgysgddrkslqklieamGaeyskdltksvTHLicks 42 
                 ++++ + +d r++  +++ ++Ga+  k +++ vTH++ ++
  KKY14046.1 167 FYFESVPEDLRNKCSRQVASLGAQEEKFFSRYVTHVVTTR 206
                 6778888888***************************876 PP

>> RFX1_trans_act  RFX1 transcription activation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2      0.64   2.9e+03      18      44 ..      23      49 ..       8      63 .. 0.71
   2 ?   13.0   1.6     2e-05     0.088       4      94 ..     420     520 ..     408     529 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.64
  RFX1_trans_act 18 aaaqvvqavpasqqRsvvqatssapka 44
                    a+  ++  v  s+ Rs+ q   + p++
      KKY14046.1 23 APLASIPHVTNSPHRSLAQNGMKRPRQ 49
                    344477889999999999988776654 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2e-05
  RFX1_trans_act   4 gsdsaksvavlqtsaaaqvvqavpasqqRsvvqatssapkaepvqqlsvsrlqqvhitqeqqv.....pvqHvYpsqvqYv.....eggdavYtn 88 
                     ++d+++  +v q  + +qv      ++ +s+ +at+  + ++  +++ v++ +++   qe q      p++Hv p+q+ +       g + + ++
      KKY14046.1 420 TADAKPDRSVWQDEQHVQVEDDGSNAPSKSLARATEPLNSGAGESNIMVNESERILPRQESQSstfaaPMSHVRPNQMYFArepaaSGMNQSMIT 514
                     56778888899999************************************999998899944445667************842221234678899 PP

  RFX1_trans_act  89 stirss 94 
                     s+irs+
      KKY14046.1 515 SAIRSQ 520
                     999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1113  (0.0620782); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.55
# Mc/sec: 3701.57
//
Query:       KKY14047.1  [L=274]
Description: putative 3-methyl-2-oxobutanoate hydroxymethyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-101  339.0   0.2   1.9e-101  338.8   0.2    1.0  1  Pantoate_transf  Ketopantoate hydroxymethyltransferase
    1.3e-05   24.8   0.5    2.1e-05   24.1   0.5    1.3  1  PEP_mutase       Phosphoenolpyruvate phosphomutase
  ------ inclusion threshold ------
      0.098   12.8   0.0       0.19   11.9   0.0    1.5  1  DUF2012          Protein of unknown function (DUF2012)
       0.15   12.1   0.0       0.55   10.4   0.0    1.9  2  P_C10            Protein C10


Domain annotation for each model (and alignments):
>> Pantoate_transf  Ketopantoate hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.8   0.2  4.3e-105  1.9e-101      19     258 ..       1     242 [.       1     243 [. 0.99

  Alignments for each domain:
  == domain 1  score: 338.8 bits;  conditional E-value: 4.3e-105
  Pantoate_transf  19 mlTaydattAklvdeagvdviLVGDslgmvvlgyestlpvtleemiyhtkaVargakralvvadlPfgsyeaskeqalenAarllkeggadavK 112
                      mlTa+d+++A+++d+ag+++iLVGDsl+mv+lg+++t +vtl+emi h+++V+r++++a+ ++dlP+gsye+s eqal++A+r++keg+++ vK
       KKY14047.1   1 MLTAHDFPSASVADAAGMEMILVGDSLAMVALGMSDTSEVTLDEMIVHCRSVSRATQSAFTIGDLPMGSYEVSLEQALASAIRIIKEGRMQGVK 94 
                      8********************************************************************************************* PP

  Pantoate_transf 113 leggaevaetvkalveagipVmgHiGltPqsvnalggykvqgkteeeaeklledakaleeaGafalvlEavpaelakeiteklsiptIGIGAGa 206
                      legg+e+a+t++++++agipV++HiGltPq++nalgg++vqgk++++a +lleda+++++aGaf++vlEavp e+a+ +t+klsiptIGIGAG+
       KKY14047.1  95 LEGGKEMAPTIQKITTAGIPVVAHIGLTPQRQNALGGFRVQGKSKASAFRLLEDALSVQSAGAFMVVLEAVPPEVAQWVTSKLSIPTIGIGAGE 188
                      ********************************************************************************************** PP

  Pantoate_transf 207 acdGqvlvlhDllglt..ekfkpkfvkkyaelaesieeavkaYaeevkegsFPa 258
                      +c+Gqvlv+ D+ g +   +f pkfvk+y ++ ++  +a+++Y++evk++s+Pa
       KKY14047.1 189 GCSGQVLVQVDMSGNYppGRFLPKFVKRYGDVWSESFKAIRQYRDEVKSRSYPA 242
                      ***************9555679*******************************8 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.5   4.7e-09   2.1e-05      14     107 ..       2      98 ..       1     120 [. 0.79

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 4.7e-09
  PEP_mutase  14 pnawDalsakiveeagfkalatsSlavaaslGvpDgeelpleellaavraiaevvslPl.ivDledG.ygesp.eevaetvrrliaaGvvgvniEDk 107
                 + a+D  sa+++ +ag++ + ++      +lG+ D++e++l+e++ ++r++ ++++    i Dl  G y+ s  + +a ++r + + ++ gv +E  
  KKY14047.1   2 LTAHDFPSASVADAAGMEMILVGDSLAMVALGMSDTSEVTLDEMIVHCRSVSRATQSAFtIGDLPMGsYEVSLeQALASAIRIIKEGRMQGVKLEGG 98 
                 789********************9999999*************************866636799888344343134556666666666777777766 PP

>> DUF2012  Protein of unknown function (DUF2012)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.2e-05      0.19       8      48 ..      36      76 ..      31     109 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.2e-05
     DUF2012  8 antrvlLdsgqqrkfkalvrrDGsFifrdlpegsYlLeves 48
                 +++v+Ld+   + +++  ++   F++ dlp gsY + +e+
  KKY14047.1 36 DTSEVTLDEMIVHCRSVSRATQSAFTIGDLPMGSYEVSLEQ 76
                6789********************************99876 PP

>> P_C10  Protein C10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         1   4.5e+03      25      44 ..      89     108 ..      73     122 .. 0.61
   2 ?   10.4   0.0   0.00012      0.55      57      83 ..     243     269 ..     239     272 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1
       P_C10  25 kleeakesagndmlkvmqlv 44 
                 +++ +k + g++m  ++q++
  KKY14047.1  89 RMQGVKLEGGKEMAPTIQKI 108
                 66666777777766666655 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00012
       P_C10  57 kkyGFaedreGvvkfaqlvrelekedk 83 
                 k++ ++ ++eG+ +f ++v +++++d+
  KKY14047.1 243 KEHTYPMSKEGLANFQEAVSQISRDDR 269
                 7899**********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 1656.65
//
Query:       KKY14048.1  [L=203]
Description: putative ubiquitin-conjugating enzyme h [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-29  102.4   0.1      2e-29  102.0   0.1    1.1  1  UQ_con    Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.1   1.1e-33     2e-29      40     139 ..      59     159 ..      36     160 .. 0.93

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 1.1e-33
                 STTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBE.TTSBB-CGGGSTTT--TTSHHHHHHH.HHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHH CS
      UQ_con  40 tpYeggvFklelefpedYPlkpPkvkfvtkifHPnvd.ksGevcldiLkeekWspaltlesvll.siqsLlaepnpesplnkeaakllkkdreeykkkv 136
                 +p e g +k+++e+p+ YP+k+P++ fv++ifHPn+d  sG+vcld+++ ++Wsp+ ++ +++   + +Ll+ pnp++pln eaa+ll +++++y++kv
  KKY14048.1  59 GPSERGQWKIHVELPDAYPYKSPSIGFVNRIFHPNIDeLSGSVCLDVIN-QTWSPMFDMINIFEvFLPQLLRYPNPTDPLNGEAAALLLREPKTYEAKV 156
                 46689********************************99**********.55***********989********************************* PP

                 HHH CS
      UQ_con 137 key 139
                 key
  KKY14048.1 157 KEY 159
                 998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 1286.32
//
Query:       KKY14077.1  [L=139]
Description: hypothetical protein UCRPC4_g06860 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-13   50.7  17.3    4.2e-13   49.9  17.3    1.4  1  DUF1754     Eukaryotic family of unknown function (DUF1754)
  ------ inclusion threshold ------
      0.062   12.7  15.4       0.07   12.5  15.4    1.0  1  CDC27       DNA polymerase subunit Cdc27
        8.5    5.6   8.9         11    5.3   8.9    1.1  1  DUF4407     Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> DUF1754  Eukaryotic family of unknown function (DUF1754)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9  17.3     7e-17   4.2e-13       4      97 ..       7     102 ..       4     103 .. 0.67

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 7e-17
     DUF1754   4 evvgGkLKLKgkkivkegvkKkkkkkkkkske...kkeeekekeeeekssaesda..esekdkeeeeddseekkekeeeqenlTeAErkfeevrkKrlk 97 
                 ++ +GkLKLKg++ ++++  Kkkkk+ +++++   ++ee+k + + ++ss    +  ++++ + e+ +d+ e++ +++ ++ +TeAEr++ee+r++rl+
  KKY14077.1   7 TFSTGKLKLKGVS-TDAKISKKKKKHRSEDSKskkEQEEIKGAPDGQRSSLS--KalKEDDTEFETGRDQTEGERDAQGERVKTEAERRWEEQRRRRLD 102
                 4699*********.55444444444433333300022333333333333333..24589999999999999**************************86 PP

>> CDC27  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5  15.4   1.2e-05      0.07     220     316 ..      19     136 ..       5     139 .] 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.2e-05
       CDC27 220 ffkakpaekkkkteakeqkveeeseeekekedkeleddsaaeeeeeeekstkk...ekrrqkklessdeeeeer..................ekekekr 297
                   +ak ++kkkk  ++ +k+++e ee k++ d + +  s+a +e++ e+ t+    e+ r  ++e+++ e+e+r                  +++ke+ 
  KKY14077.1  19 STDAKISKKKKKHRSEDSKSKKEQEEIKGAPDGQRSSLSKALKEDDTEFETGRdqtEGERDAQGERVKTEAERRweeqrrrrlddrlkregvKSHKERV 117
                 457788888888888888888888888888777776666655555555555554554557778888887777667777778999999999999999999 PP

       CDC27 298 krlkkmmeDededdemedv 316
                 ++l + ++  +e  +m ++
  KKY14077.1 118 EELNRYLSKLSEHHDMPKI 136
                 9999998888888878776 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   8.9    0.0018        11     122     222 ..      26     127 ..      15     133 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0018
     DUF4407 122 elkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld....atarlaalr 216
                 + k++ +++ ++  +e e+   a +++ ++++++l++  +e++   d+  ++g+   +G+   +++ +++ ++++++l++  ++ +     ++r+++l+
  KKY14077.1  26 KKKKKHRSEDSKSKKEQEEIKGAPDGQRSSLSKALKEDDTEFETGRDQ--TEGERDAQGERVKTEAERRWEEQRRRRLDDRLKR-EgvksHKERVEELN 121
                 334444444444444444444567777777777777777777766666..6677789999999999***********9996555.23555555555555 PP

     DUF4407 217 aelael 222
                 + l++l
  KKY14077.1 122 RYLSKL 127
                 555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1970  (0.109878); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1002.67
//
Query:       KKY14078.1  [L=498]
Description: putative allantoinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-23   83.4   0.0      3e-23   82.7   0.0    1.4  1  Amidohydro_1  Amidohydrolase family
    1.8e-12   47.5   0.0    8.1e-06   25.6   0.0    2.4  2  Amidohydro_3  Amidohydrolase family
     0.0073   16.8   0.0      0.015   15.8   0.0    1.4  1  Preseq_ALAS   5-aminolevulinate synthase presequence
  ------ inclusion threshold ------
       0.18   12.2   0.1       0.33   11.3   0.1    1.5  1  Urease_alpha  Urease alpha-subunit, N-terminal domain


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.0   6.7e-27     3e-23       1     344 []      55     459 ..      55     459 .. 0.77

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 6.7e-27
                   EEEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH...HHHHHHHHHHTSSSEEEEEEESSEGGSGCCCSH CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattst...giealleaaeelplglrilggkvsldrgsaets 94 
                   +v+PG+ID HvHl+  +l+g         +  ++  +e+g++ a+ +Gttt+ ++   +++   ++ ++l+a+++ + g      ++  d +s++  
    KKY14078.1  55 YVMPGGIDCHVHLQEPALFGG--------KGRSSDNFETGTRSAIAGGTTTIVAFAP-QCKdeeSLLDILDATHKKANG------NCYTD-YSFHML 135
                   69**************99998........8889**********************99.7888999999999**995333......55555.666644 PP

                   HHHHHHHHHHHHHHHHHCTTTCEE.EEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETTTTSTCC.HHTTTHCC CS
  Amidohydro_1  95 kasreklkagaaetikgkadgvvk.valapheapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafgetiehgthlevaes.lglldeik 189
                     +  +l     ++   +++g+ +  + + ++a ++ d+++ ++l + +k+++  +iHa e+     ++  +   + ++  + + a s  +l ++  
    KKY14078.1 136 VSNPCQL--ALSQFPVLRSRGISSlKIYMTYAALQLRDDQILDVLLASRKEGITTMIHA-ENGDVLTWMTSQLEARGMY-APKYHATSrPQLVET-- 226
                   4444444..334456778889999999******************999999********.5555666998888866666.333333443222222.. PP

                   EEEHCTCEEE...HH.......HHHHHHHHHHHHCEEHHHHHHHH..............................SEHHHHHHHHHHHHTSCEEEEE CS
  Amidohydro_1 190 lilahgvhlt...pt.......eaellkerlkeagvahcpfsnsi..............................lrsgrealrkaldeGvkvglgt 246
                    +  + ++l+   +t       ++ + +++l++a    +p+  +                               ++++ +a++  l++G++ +l++
    KKY14078.1 227 EATNRAITLSeliDTpilvvhvSSPTAAAHLRNAQTRGLPTYAETcpqylfltrehlskpgfegakcvcsppprdSTDDHDAIWTGLQNGTFTVLSS 323
                   334444445456544455555666677788888888855555555666666677777899999999999999999********************** PP

                   ECT....................TSSCCGGHHHH.............HHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TT. CS
  Amidohydro_1 247 Dga....................asgnslnllee.............lrlalklqrgllyedeegglslkealrmaTingAkalglddkvGsievG. 309
                   D++                              +             +rla+ l+        +  l+l ++++++++n+Ak +gl+ ++G+i +G 
    KKY14078.1 324 DHCpfmyedtdhgkksiiseeypE---------GrfagipngcpgveTRLATVLS--------ANRLPLQKFVEVTSTNAAKLYGLYPQKGTILPGv 403
                   *******99988775555555530.........2555533334434466666333........445******************************7 PP

                   SB--EEEECCCT.......................CGGGTTTCTSEEEEEEEETTEEE CS
  Amidohydro_1 310 kdADlvvvdldi.......................laafvglkkdgnvkkvivkGklv 344
                    dADl+++  ++                       +++f+g++ d +++ +i++Gk+v
    KKY14078.1 404 SDADLTIW--YPpkgqrgalepfqltnsmlhhnvdYTPFEGQTLDQWPRYTILRGKVV 459
                   79******..444577888899999*******************************98 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.8e-09   8.1e-06       1      24 [.      47      70 ..      47     102 .. 0.87
   2 !   19.5   0.0   1.3e-07   0.00057     406     472 ..     371     459 ..     359     460 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.8e-09
  Amidohydro_3  1 eviDakGrlvlPGFvDsHtHlagg 24
                  +viDa+G++v+PG++D H Hl + 
    KKY14078.1 47 KVIDAQGGYVMPGGIDCHVHLQEP 70
                  69******************8765 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1.3e-07
  Amidohydro_3 406 eelsleealalyTrgpAkalgledrkGtLevG.adADlvvld........adpldvdppelaear.............vrltvvdGrvv 472
                   ++l+l++ +  +++++Ak++gl   kGt+ +G  dADl+++          +p++++ + l++ +             +r+t+ +G+vv
    KKY14078.1 371 NRLPLQKFVEVTSTNAAKLYGLYPQKGTILPGvSDADLTIWYppkgqrgaLEPFQLTNSMLHHNVdytpfegqtldqwPRYTILRGKVV 459
                   689*****************************779************************999999**********************98 PP

>> Preseq_ALAS  5-aminolevulinate synthase presequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.4e-06     0.015      15     104 ..     254     343 ..     248     347 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.4e-06
  Preseq_ALAS  15 qaflqkark.sLlsyAqkCPvmmelaaralstsaaalqkakeetpvakeeakeakklplahpspaasqavaskCPFlaaemsqkkskvvrk 104
                  +a l++a++  L +yA+ CP  + l+   ls+   +  k     p+ +++++++ ++ ++ +  +  + ++ +CPF+  +  ++k +++++
   KKY14078.1 254 AAHLRNAQTrGLPTYAETCPQYLFLTREHLSKPGFEGAKC-VCSPPPRDSTDDHDAIWTGLQNGTFTVLSSDHCPFMYEDTDHGKKSIISE 343
                  6778888876899**********88888999999888887.56777788888888999999999*****************9999999876 PP

>> Urease_alpha  Urease alpha-subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   7.5e-05      0.33      65      97 ..       3      35 ..       1      51 [. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.5e-05
  Urease_alpha 65 alDlvitnavilDatgivkadigikdgrivaiG 97
                  + Dl+i+n +++ a+     di++kdg+i+ ++
    KKY14078.1  3 SFDLLIVNGLVVTASDTANYDIAVKDGKIAFLA 35
                  67***************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 2977.45
//
Query:       KKY14079.1  [L=300]
Description: putative short-chain dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-25   88.0   0.1    4.2e-23   82.1   0.1    3.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    8.1e-22   77.6   0.8    1.7e-19   70.1   0.9    2.8  2  adh_short     short chain dehydrogenase


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.1   4.6e-27   4.2e-23      14     233 ..      51     293 ..      45     294 .. 0.86

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 4.6e-27
                   HHHTT-EEEEEESSGGH.HHHHHHHHH...HTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG..............CSS-GGGH CS
  adh_short_C2  14 laeeGaevvltdlneea.kkrveelae...elgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapk..............lkgpflet 90 
                   l ++Ga+v +t l  ++ +++v++l +   ++g e+  +  DV ++e++ea+++ ++++  +lDil+ nagi ++              l++++ + 
    KKY14079.1  51 LVSNGAKVYITALATDDfEEQVAKLNSigsQVGGEAigFIGDVLSKESIEAIANYIKDRERHLDILISNAGIRRDppimcdvqrasldeLQTSMWSS 147
                   7889***********999999999876111444443599*********************************9999999998888888888889999 PP

                   -HHHHHHHHHHHTHHHHHHHHHHHHHCTSC................CEEEEEEEGGGTSBSTTTT..HHHHHHHHHHHHHHHHHHHHGGGTEEEEEE CS
  adh_short_C2  91 sreefdraldvnlyslfllakaalplmkeg................gsivnlssvgaervvpnyn..aygaaKaalealtrylAvelgpkgiRvNav 169
                   + +++++++ +n+++ + l+ a+l+l+++                 g +v +ss ++    +n +   y+ +Kaa+ +l+  lA +++p   R N v
    KKY14079.1 148 KHSDWEDTFRINVTAHYFLSVALLKLLAAAsnldlgngrlgrddgrGIVVITSSCASMHNCTNIDltSYASSKAAIDHLVPLLASKYAP--CRMNPV 242
                   99***********************665544688888888888866667777888888888888888**********************..9***99 PP

                   EE--BHCTGGGGSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 170 spgpikTlaasgikgfdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                     g  +         f +l +    + p +r+g++e++a ++lfL+s++ +yi G  + vDgG 
    KKY14079.1 243 EEGGNQ---------FGDLFD----KMPAKRIGRTEDIAGTILFLCSKAGAYIDGRCICVDGGR 293
                   887644.........455554....56************************************6 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.9   1.9e-23   1.7e-19       2     170 ..      17     237 ..      16     246 .. 0.85
   2 ?   -2.5   0.0      0.32   2.9e+03     127     140 ..     267     280 ..     263     282 .. 0.83

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 1.9e-23
                 EEEEESTTSHHHHHHH................HHHHHTT-EEEEEESCHHHHHHHHHHHHHT....TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESE CS
   adh_short   2 vvlvtGassGIGraia................kelakeGakvvvvdrseekleevakelkee....gakalaiqvDvtdreevealvekavkklgkldv 80 
                 v+lvtG++sG+G  ia                + l+++Gakv++++   ++ ee +++l++     g +a+ + +Dv ++e++ea+ + ++++  +ld+
  KKY14079.1  17 VALVTGGTSGVGFMIAsvtrsaswsfgisdfpQGLVSNGAKVYITALATDDFEEQVAKLNSIgsqvGGEAIGFIGDVLSKESIEAIANYIKDRERHLDI 115
                 789999999999888844444444444433335799*********************999987767888****************************** PP

                 EEE---S................S--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH..............HCTTEEEEEEEEGGG..TSB-TTBH CS
   adh_short  81 LvnNAGi................tgsgpfselseeewervievNltgvflltravlpaml..............kqssGrIvnvsSvag..kvpvagva 147
                 L+ NAGi                + ++++ + + ++we+++ +N+t+ + l+ a+l+ +               +  +G +v +sS a+  +  ++ ++
  KKY14079.1 116 LISNAGIrrdppimcdvqrasldELQTSMWSSKHSDWEDTFRINVTAHYFLSVALLKLLAaasnldlgngrlgrDDGRGIVVITSSCASmhNCTNIDLT 214
                 ****************99988765555666667778**********************99999999**9999888888889999999994344567789 PP

                 HHHHHHHHHHHHHHHHHHHHGGG CS
   adh_short 148 aYsAsKaavagltrslakelapt 170
                 +Y++sKaa+++l+  la  +ap 
  KKY14079.1 215 SYASSKAAIDHLVPLLASKYAPC 237
                 ******************99985 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.32
                 TTEEEEEEEEGGGT CS
   adh_short 127 ssGrIvnvsSvagk 140
                  +G+I + +S ag 
  KKY14079.1 267 IAGTILFLCSKAGA 280
                 5799******9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.51
# Mc/sec: 1783.22
//
Query:       KKY14080.1  [L=548]
Description: putative phenylacetate 2-hydroxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-56  191.8   0.0    2.1e-56  191.6   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.6   0.0   1.2e-60   2.1e-56       1     445 [.      52     499 ..      52     523 .. 0.88

  Alignments for each domain:
  == domain 1  score: 191.6 bits;  conditional E-value: 1.2e-60
                 --SESEHHCCHCHHHHTTTCCHHHHHHHHHHHH.-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH...HHH CS
        p450   1 Ppgptplplvgnllqlgrkeelhevlrklqkky.gpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang...ekw 95 
                 P  p++ p++g+llqlg  e   +v++k  ++y +++f+++lg++++vv+++ ++vk+ l+ +++++ +rp   +++     + ++g    ++   +  
  KKY14080.1  52 PEIPNAKPFFGHLLQLG--EDHASVCEKWWRQYnQSVFQIRLGNTRAVVVNSFDDVKKMLVGHQSAVIDRPTLYTFHGVI--SSTQGFTIGSSpwdNSC 146
                 778999***********..55566677777777699***************************97777776666666644..55555555444357888 PP

                 HHHHHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCS.EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCC CS
        p450  96 kklRrfltptltsfgklsleelveeeaedlveklrkkagess.elditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqlll 193
                 k+ R+   ++l    ++ + ++++ e+ + v+ l+++++  + e+ + ++++++al++  ++++g+r+d + de l e++++  ++s ll + s ++ +
  KKY14080.1 147 KNKRKAAGQALGRAAIKGYWPMFDLESYCIVRDLHRDSKGGEiEIGVRPYIQRYALNTTLTLCYGIRMDEVYDELLREILHVGSAIS-LLRSASENYQD 244
                 99999999999999788***********************9999******************************************6.6667788**** PP

                 CCHHHTCCSCH.HHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 194 lfpllkylptk.llrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLak 291
                 + pll+y+p++  +r+ ke +++++++ld l+++ r+++++   +++  ++a +l++   ++ +kl+  e+   +l l  +G++T   tl+ ++  L +
  KKY14080.1 245 YVPLLRYFPNNeKNRRSKELRDRRDKYLDLLLNKVRDQIQRG--TDKPCISAAILKD---EE-TKLTGVEVSSICLSLVSGGFETIPGTLTSCIGSLCT 337
                 *********86267899*************************..9***********6...44.48******************************8887 PP

                 S..HHHHHHHHHHHHHHCCTTTT-HHHHC..CT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTS.SSTTS--G CS
        p450 292 n..PevqeklreEidevlgdkreptyddl..qklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevf.pnPeeFdp 385
                 +  +  qe+ + +i+++ ++   +  + +  +k+py++a++kE+ R+++v+ ++lpR++ +d+  +g +ip+ t++++n++a ++d ++f +   +Fdp
  KKY14080.1 338 KegQIFQERAYADIKRHYPNPADIWLNSFqeEKVPYVNAIVKEAARYYTVSAMSLPRKTVSDIDWNGAKIPAKTMILINAQAANHDVDHFgSSGGTFDP 436
                 622457************665655555541168****************************************************************** PP

                 GGGB-TTS....CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGE CS
        p450 386 eRFldekg....nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdppp 445
                 eR+ld+      ++ +   +++ FGaG R+C G+ +A   +  +l ++L+ +++   +  +pp+
  KKY14080.1 437 ERWLDNPDtiptEKASTGIQHFSFGAGSRACSGQIIASRLIYTALLRILSSYKIVASE-IEPPN 499
                 ******9999997778999*********************************998744.44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3755.24
//
Query:       KKY14081.1  [L=608]
Description: putativedichlorophenol 6 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-64  218.8   0.0    3.2e-64  217.4   0.0    1.6  2  FAD_binding_3   FAD binding domain
    3.8e-08   33.5   0.0    8.9e-08   32.3   0.0    1.7  1  Phe_hydrox_dim  Phenol hydroxylase, C-terminal dimerisation d
    1.1e-05   25.2   0.0    1.9e-05   24.4   0.0    1.4  1  DAO             FAD dependent oxidoreductase
     0.0034   16.5   0.0      0.007   15.5   0.0    1.5  2  Lycopene_cycl   Lycopene cyclase protein
     0.0055   16.0   0.0      0.062   12.5   0.0    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.017   15.7   0.0       0.12   12.9   0.0    2.2  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      0.028   13.7   0.0      0.042   13.1   0.0    1.3  1  Thi4            Thi4 family
      0.044   12.6   0.1        1.1    8.0   0.0    2.1  2  Trp_halogenase  Tryptophan halogenase
      0.048   13.7   0.0       0.12   12.3   0.0    1.7  2  NAD_binding_9   FAD-NAD(P)-binding
      0.051   13.8   0.0       0.15   12.3   0.0    1.8  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
        0.1   12.8   0.0       0.43   10.8   0.0    2.0  2  TrkA_N          TrkA-N domain


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.4   0.0   1.9e-67   3.2e-64       1     347 [.       5     369 ..       5     371 .. 0.86
   2 ?   -2.0   0.1      0.98   1.6e+03     286     299 ..     482     495 ..     469     496 .. 0.85

  Alignments for each domain:
  == domain 1  score: 217.4 bits;  conditional E-value: 1.9e-67
                    EEEEEEE--SHHHHHHH..HHHHHTTHHEEEEESSSSSCCSS..S--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE.....CCCCCEEE CS
  FAD_binding_3   1 etdVlIVGaGpaGlmla..llLseaGvrvvlvekrsttvvlp..radglnqrtmellrqlGledrilaegapnelmgealyne.....lsdtpkar 87 
                    ++dVlIVG+Gp+Gl  a  llL +     +l+ek  +  ++   ra ++ +r+me+l+q+Gl+++i+++ ++    + a yn+     +++     
     KKY14081.1   5 DVDVLIVGGGPVGLAIAyqLLLFSPSTTIHLIEKNPKPLQQRfgRAVTFWCRSMEMLDQIGLAEEIIQQCYSIR--TSAAYNQkgeevFGRGWSFL 98 
                    68*************993334555556699*******9988777**************************6666..55555553355544446666 PP

                    EEHHCHHCST-CEE--HHHHHHHHHHHHHH.....HTEEETCSEEEECCEECCC.......CCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHH CS
  FAD_binding_3  88 adlelesspervtvypqteleriLvehaee.....rglqvrfktevesleqdee.......gvtaevrdketgeeetvrakYlvGaDGgrStvrkt 171
                    ++++ ++++   +v+ q+++e i + + e       g +++  +e++sle de+        v a+v d+e+ ee++v+++Yl+GaDG r++vr +
     KKY14081.1  99 ENVQ-DTKWDFASVLRQKYVEEIFRGKIEDlleggSGGEIKAPAEFKSLEVDETigigdkgRVIATVWDEEKKEEYRVKCRYLIGADGSRTAVRGA 193
                    6666.99999***********99998887633222479***********9876433333327999999**************************** PP

                    HTGGEEEEEEEEEEEEEEEEEEC.-SCCCTTCCEEEEECCTTEEEEEECCE.TEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEE.E CS
  FAD_binding_3 172 lgiefegeetvyeagvldvlfda.dlsdiveplvlilsaesrgvmviPlen.tlerfyvqvearaekeersekfteeevkarlreivgektldv.e 264
                    +gie  g++t  ++  +d + +   ++++++   ++ s+  + v  iPl+  +     +  ++ +e+++  ++++ee  +++++ +v++ +++  +
     KKY14081.1 194 AGIESDGSRTEDKWVRIDGVLKHtTMPKPRSY-GALESQIYGNVLWIPLDHgAT---RIGYSFHEERQKLYKEMNEEAFIQEAKLSVAPFEIEFeR 285
                    ***********999999988888799988887.778888888889******333...4788889999999***********************989 PP

                    EEEEEEEEEEEEEESS.SEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHH CS
  FAD_binding_3 265 ieevsawtvaqrvaek.yrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvd 347
                    ++++s++ v+qrva++ ++kg vflaGDA+H+h+  +GqG+Nt++ DavnL wkL +vl+G+Ak++lL+tY++err+ a ++++
     KKY14081.1 286 VDWASVYMVGQRVARSfWTKGCVFLAGDACHTHSSGAGQGMNTGLHDAVNLSWKLSLVLTGKAKPSLLETYDSERRPNAVKLIK 369
                    **************984699*********************************************************9999875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.98
                    EEE-GGGTEEE-ST CS
  FAD_binding_3 286 vflaGDAaHihpPt 299
                    ++ aGD aH+  P+
     KKY14081.1 482 ILFAGDPAHTRQPA 495
                    789*******9996 PP

>> Phe_hydrox_dim  Phenol hydroxylase, C-terminal dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   5.5e-11   8.9e-08       1     132 [.     408     556 ..     408     604 .. 0.70

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 5.5e-11
  Phe_hydrox_dim   1 FtsGvgveYqpsllva........evkskqnlatg.............lrpGrrlpsakVvrvaDanpvdlqdeipsdGrfRilvfagdlsdaeq 74 
                     F +G++++Y+p++l +        ++        +              +pG r p ++++  a   p +l++  p   +f+i++fagd +++  
      KKY14081.1 408 FNTGLSMAYEPNML-NienagekvPN--------NddetltkitiptpPTPGFRAPDVQLTIPALLEPTRLHKITPNRAKFHIILFAGDPAHT-- 491
                     889***********.43577766632........133333344777779****************************************5544.. PP

  Phe_hydrox_dim  75 ksrlsaladalsske...sflsrftpadadvdsvievllihaap....rkeieledlPevlrpfd 132
                     ++ +++l ++l+++    s  s+ +p++++  + i+ l+i + +    +++ +l+ l++  rp++
      KKY14081.1 492 RQPAQHLTEKLKESLlfsSSASKPSPRTQTLTNGIDALAIGSGNirvlTDNQDLSHLHDRSRPTT 556
                     45555555555544322244677777778999999999999888777666666777777666543 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.2e-08   1.9e-05       1      48 [.       7      58 ..       7     130 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.2e-08
                EEEEECTSHHHHHHHHHHHHTT....EEEEESSSSTTSSGGGSSEEEEESSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg....VtllekgdiagsgaSgrnsgllhsgl 48
                dv+i+GGG +Gl++Ay+L        + l+ek++ + ++  gr+  ++  ++
  KKY14081.1  7 DVLIVGGGPVGLAIAYQLLLFSpsttIHLIEKNPKPLQQRFGRAVTFWCRSM 58
                8*****************77644789*******8887776666666665554 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.3e-06     0.007       1      52 [.       7      62 ..       7      93 .. 0.79
   2 ?   -3.9   0.0       3.2   5.2e+03      51      82 ..     328     357 ..     323     361 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.3e-06
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsll...fpnny.vWsdefedlg 52
                   Dv+++G+Gp gl++A +l    p   + lie  p++l   f+     W+   e l+
     KKY14081.1  7 DVLIVGGGPVGLAIAYQLLLFSPSTTIHLIEKNPKPLqqrFGRAVtFWCRSMEMLD 62
                   9******************************9999973322333345666665555 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.2
  Lycopene_cycl  51 lgaleecvehsWsgtivylddgkkillgraYg 82 
                     g l+++v+ sW+   v   + k+ ll+ +Y 
     KKY14081.1 328 TG-LHDAVNLSWKLSLVLTGKAKPSLLE-TYD 357
                    45.999*******999999888888887.775 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   3.8e-05     0.062     143     185 ..       6      51 ..       2      61 .. 0.80
   2 ?    0.6   0.0      0.16   2.6e+02      88     246 ..     165     197 ..     110     221 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.8e-05
                  SEEEEES-SHHHHHHHHHHHHH..T-EEEEEESSSSSS.TTS-HHH CS
                  xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxx RF
  Pyr_redox_2 143 krivvvGgGyiGvElAaalakl..gkevtlveardrll.raldkel 185
                   ++++vGgG++G+ +A +l  +     ++l+e ++++l + +++++
   KKY14081.1   6 VDVLIVGGGPVGLAIAYQLLLFspSTTIHLIEKNPKPLqQRFGRAV 51 
                  5799**************87773245699*******9977777665 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.16
                  TEEECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  88 ekkkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrllraldkel 185
                   ++++++e ++++ +l+ A Gs++   g  G                                                                   
   KKY14081.1 165 WDEEKKEEYRVKCRYLIGADGSRTAVRGAAGI------------------------------------------------------------------ 196
                  23333556667777777777777666655555.................................................................. PP

                  HHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCSH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 186 saaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstellee 246
                                                                              e
   KKY14081.1 197 ------------------------------------------------------------E 197
                  ............................................................2 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.4e-05      0.12       2      43 ..       8      52 ..       7      65 .. 0.86
   2 ?   -0.4   0.0       1.1   1.8e+03      37      52 ..     369     384 ..     359     411 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.4e-05
                EEEECSSHHHHHHHHHHHHTT..SEEEEEESSSSSS.TTSSHHHH CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelg..kkVtvversdkll.rllDeeas 43
                v++vGgG +gl  A  l  +     ++++e ++k+l + +++++ 
  KKY14081.1  8 VLIVGGGPVGLAIAYQLLLFSpsTTIHLIEKNPKPLqQRFGRAVT 52
                89***************9998667889*********887777665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.1
                 TSSHHHHHHHHHHHHH CS
   Pyr_redox  37 llDeeaskilqeklek 52 
                 ++De++s++++ kl k
  KKY14081.1 369 KYDEDISTLVTGKLPK 384
                 79*******9999865 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.6e-05     0.042      16      50 ..       4      39 ..       1      82 [. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.6e-05
                TEEEEEEE--SHHHHHHHHHHHHC.TTS-EEEEESS CS
        Thi4 16 aesDvvivGaGssGLtaayylakk.pdlkvailers 50
                ++ Dv+ivG+G+ GL+ ay l    p   + ++e++
  KKY14081.1  4 VDVDVLIVGGGPVGLAIAYQLLLFsPSTTIHLIEKN 39
                578****************99776699999999875 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0007       1.1       1      77 [.       7      83 ..       7     117 .. 0.78
   2 ?    2.6   0.0      0.03        49     257     321 ..     234     310 ..     161     326 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0007
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS-.--SS-EE--THHHH..THHHHT--HHHHCHHCT-EEE-EEEE CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseeig.tvgvGeatipsirk..llrlLgideeeflreteatfKlgikF 77
                    +++ivGGG+ G   A  l      ++++ l+e++  + + + G+a +   r   +l+++g+ ee  ++++  +++ ++ +
      KKY14081.1  7 DVLIVGGGPVGLAIAYQLLLFS-PSTTIHLIEKNPKPlQQRFGRAVTFWCRSmeMLDQIGLAEE-IIQQC-YSIRTSAAY 83
                    699*********9999998887.459******98777245789988877766568888888877.66665.466666666 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.03
                     EEEEEEEETTEEEE.EEEE-TTTS..-HHHHHHHHHHHCT--TTTS-EEEE---EE...........ES-SEETTEEE- CS
  Trp_halogenase 257 GWtWkiPLqhrlgn.Gyvyssaha..dddeAlaellaeldgkleaeprkirfttGr...........rkqawvknvval 321
                     G +  iPL h ++  Gy + +++    +++ ++++++e +++    p +i+f+               +++w k++v l
      KKY14081.1 234 GNVLWIPLDHGATRiGYSFHEERQklYKEMNEEAFIQEAKLS--VAPFEIEFERVDwasvymvgqrvARSFWTKGCVFL 310
                     555569*****9999****99987665677777777766644..44445555544455566777777899999999977 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.5e-05      0.12       2      36 ..      10      41 ..       9      50 .. 0.87
   2 ?   -3.2   0.0       4.6   7.5e+03      22      51 ..     475     498 ..     467     521 .. 0.48

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.5e-05
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsep 36
                   ivG+Gp Gla++ +Ll     + +++i+l+++++ 
     KKY14081.1 10 IVGGGPVGLAIAYQLLLF---SPSTTIHLIEKNPK 41
                   9***************99...599*******9764 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.6
  NAD_binding_9  22 kkspleitlf..dpsepgagrvwrtdqseell 51 
                    ++++++i lf  dp+++        +q++++l
     KKY14081.1 475 NRAKFHIILFagDPAHT--------RQPAQHL 498
                    45566666665555333........2222222 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     9e-05      0.15       1      30 [.      10      41 ..      10      43 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9e-05
                   EE--SHHHHHHHHHHHCC..TEEEEEE-SSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka..gfdvlllekrdr 30
                   IvG+G  Gl++Ay L        ++l+ek+++
     KKY14081.1 10 IVGGGPVGLAIAYQLLLFspSTTIHLIEKNPK 41
                   9*************986323778999998875 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00027      0.43       1      61 [.       8      67 ..       8      69 .. 0.82
   2 ?   -1.8   0.0       2.1   3.5e+03      30      61 ..     166     197 ..     152     198 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00027
                EEEES-SHHHHHHHHHHHH.TT.EEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGG CS
      TrkA_N  1 iiiiGlGrvGrslaeeLse.gg.kdvvvidkdeerveelreeglevvvgdatdeevLeeagie 61
                ++i+G G vG ++a +L   +    + +i+k+++ +++   ++ ++v   + + e+L+++g++
  KKY14081.1  8 VLIVGGGPVGLAIAYQLLLfSPsTTIHLIEKNPKPLQQ---RFGRAVTFWCRSMEMLDQIGLA 67
                68****************954476699******98887...6777788888888888887775 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.1
                 SHHHHHHHHHTTSEEEES-TTSHHHHHHTTGG CS
      TrkA_N  30 deerveelreeglevvvgdatdeevLeeagie 61 
                 dee+ ee+r +    + +d+++++v  +agie
  KKY14081.1 166 DEEKKEEYRVKCRYLIGADGSRTAVRGAAGIE 197
                 55666666655555666777777776666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 3628.53
//
Query:       KKY14082.1  [L=508]
Description: putative dimethylaniline monooxygenase 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-58  196.3   0.0    1.9e-47  161.9   0.0    2.5  2  FMO-like       Flavin-binding monooxygenase-like
    4.4e-16   59.0   0.0    8.1e-13   48.3   0.0    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    2.5e-08   33.5   0.0    6.5e-08   32.2   0.0    1.6  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    7.9e-08   31.8   0.5    3.4e-06   26.4   0.0    2.9  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    0.00024   21.3   0.0    0.00051   20.2   0.0    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0034   17.4   0.6        2.2    8.3   0.1    3.2  3  NAD_binding_9  FAD-NAD(P)-binding
      0.007   16.0   0.4        1.8    8.1   0.0    2.7  3  DAO            FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.074   13.6   0.1        0.8   10.3   0.0    2.3  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   1.6e-11   3.5e-08       2      43 ..      14      55 ..      13      60 .. 0.93
   2 !  161.9   0.0   8.5e-51   1.9e-47      83     489 ..      58     501 ..      54     506 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 1.6e-11
    FMO-like  2 kkvaviGaGvsGlasikccleegleptcfersddiGGlwrfk 43
                 +vaviG G++G+a++k  leeg++ + fer + iGGlwr  
  KKY14082.1 14 NRVAVIGLGLTGIATLKNLLEEGFDAVGFERHNHIGGLWRCY 55
                69*************************************965 PP

  == domain 2  score: 161.9 bits;  conditional E-value: 8.5e-51
    FMO-like  83 nsklleylklfakefdllkyiqfkttvcsvkkrpdfstsGqwev.vtekegkkesavfdavmvctGhhvnphlplesfpGiekfkGqyfhsrdykepev 180
                  +++ +y++ +ak f+l +  + +  v  +++   +    qw + v +     ++++fd v+v tG +  +++p+    G e fkG+++h++++k+pev
  KKY14082.1  58 GEQVAQYIEDYAKYFELSRKNRCQLGV-RIDRIDRSKDGSQWAIdVNQGSHGSRTELFDRVVVTTGPFHTAFMPK--VEGAESFKGKVLHAQEFKDPEV 153
                 57999************9987766655.4555555555669*98344455667889******************8..67******************** PP

    FMO-like 181 fkgkrvlviGlGnsggdiavelsrtaeqvllstrsGswvlsrvsdsGypwdmllvtrfksl...lkn...ilptalsnwlvekklnkrf..nhenyglk 271
                 fkg+rv+v+Gl n+++diav+ls+ a++ ++s rsG+++++r+s +G p d  +++r++sl   ++    +l+ +ls+ l+ +++ k++   ++++gl 
  KKY14082.1 154 FKGQRVVVVGLSNTAADIAVDLSEVADKTYVSHRSGAFIITRLS-NGQPLDHRITRRIASLgsaFNSafpTLAAKLSTTLLARNMRKQYplMKKSWGLL 251
                 ******************************************86.7***********9987322333222577899*********9986226899**** PP

    FMO-like 272 pkkralakepvlndelparilaGavkvkssvkelt..etsaifedgtveedidvvifatGytfafpfleesl...v.......kveknkvs....lykk 354
                 p +  l   p +n+++ +++  G+++  + ++++     s+ f +  +  ++d+vifatGy f+f  l               ++ + +      ly+ 
  KKY14082.1 252 PARPILYASPAVNEKIMSCLESGTISSLPGIRRFLpdGHSIEFTNDVTLSSVDAVIFATGYLFDFSILGSEAdptAtptpewdSSPNANGLlyprLYQG 350
                 *********************************962256888*9***********************96543111111111111222222212337899 PP

    FMO-like 355 vfpanlekptlaiiGliq.plGsilptvelqarwavrvlkGlkklpsekelleeitekkekkakrfgesksktiqtd......yi..ayldelaaliga 444
                 +f +     +la iG  +    ++++ ++l ++ +++v kG   lp+++e+ +   ++ +k +++ +  + +++ td      ++  a  + l +++g 
  KKY14082.1 351 IFSPAYSD-SLAFIGPFRgHSIAAFSNADLTSQAITQVWKGNFSLPPRSEMESWCDKNYQKSVSQLSVWHIQKVGTDpkplekWLnaAAGNGLNEMLGW 448
                 99998765.699999665156699***************************999999988988888888888888873332222211233567788885 PP

    FMO-like 445 kp.nllslllkdpklalkvffGpcspyqyrlvGp..G.....kweGarkailt 489
                    +  s+  +d kl   ++ G  +py yrl     G     kw+Gar+ai+ 
  KKY14082.1 449 TSkKAWSFWWRDRKLYNLLMDGIDTPYIYRLFDGerGeksrkKWDGARDAIFK 501
                 5415678899*********************742121223339********86 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   3.6e-16   8.1e-13      75     196 ..      53     188 ..      30     220 .. 0.83
   2 !    8.7   0.0    0.0004       0.9     212     276 ..     261     321 ..     230     345 .. 0.73

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 3.6e-16
  Pyr_redox_3  75 eeklsrkealeYlrevaksfelp....iklfeeVesvkkedeg..fevetsketyeAk.....kviiAtGefdkPnklnipGeek...lvkhyskvke 158
                  + ++s++++++Y + +ak+fel+     +l  ++ +++++++g    ++ ++++  ++     +v++ tG f+   +++++G+e+   +v h +++k+
   KKY14082.1  53 RCYPSGEQVAQYIEDYAKYFELSrknrCQLGVRIDRIDRSKDGsqWAIDVNQGSHGSRtelfdRVVVTTGPFHTAFMPKVEGAESfkgKVLHAQEFKD 150
                  5689******************7222256677899**996544338899988876665223337********************7656788******* PP

  Pyr_redox_3 159 fhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrg 196
                  ++ ++gq+vvV+G +n+a+D+A++l +   +  v +r+
   KKY14082.1 151 PEVFKGQRVVVVGLSNTAADIAVDLSEVADKTYVSHRS 188
                  *************************9998888887776 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0004
  Pyr_redox_3 212 pdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkk 276
                  p +++++ +++++++i  l    +++   +   + +++++  ++++ d v++atGy  d+s+l +
   KKY14082.1 261 PAVNEKIMSCLESGTISSLPG--IRRFLPD--GHSIEFTNDVTLSSVDAVIFATGYLFDFSILGS 321
                  566666666665554443333..5555544..44678888889999***************9973 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   2.9e-11   6.5e-08       2     175 ..      15     189 ..      14     213 .. 0.68
   2 ?   -1.8   0.0      0.62   1.4e+03     220     237 ..     295     312 ..     231     328 .. 0.70

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 2.9e-11
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCH.HHCSHHHHC.HHHHHHHHHHHHHHHHHCHHHHCCCCHCCTCEEEEESC..EEEEETEEEC... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtc.lnggcllsk.allgvaedaeiasevvkklnqgielllgeevvkidpgk..kkvklekkke... 92 
                  +v+viG G  G+a+ ++l + g++ + +e+ +++  +++c +s   ++++ ed+     +  +l+ + +  lg+ + +id+ k   +  +    +   
   KKY14082.1  15 RVAVIGLGLTGIATLKNLLEEGFDAVGFERHNHIgGLWRCYPSGeQVAQYIEDYA----KYFELSRKNRCQLGVRIDRIDRSKdgSQWAIDV--Nqgs 106
                  79***********************999533332135677774323444444443....234444455555665566666444212333322..2233 PP

                  TCEEEEEESEEEE---.E.EE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T..SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSS CS
                  xxxxxxxxxxxxxxxx.x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  93 gdeekiaydklvlAtG.s.sprdlgipGvaenvgklvrtldsaealklkllp..krivvvGgGyiGvElAaalaklgkevtlveard 175
                     ++  +d++v+ tG + +++ ++++G++     +   + +a+++k+ ++   +r+vvvG ++++ ++A  l+++++++++ ++  
   KKY14082.1 107 HGSRTELFDRVVVTTGpFhTAFMPKVEGAESFK--G--KVLHAQEFKDPEVFkgQRVVVVGLSNTAADIAVDLSEVADKTYVSHRSG 189
                  45578899********64578888*****4444..4..45677777777766689*********************99877655544 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.62
                  ETTSCEEEESEEEE-S-E CS
                  xxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 220 ledgeeidadlvvvavGv 237
                  ++d +   +d v++a+G+
   KKY14082.1 295 TNDVTLSSVDAVIFATGY 312
                  334444445555555554 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.16   3.5e+02     188     213 ..      10      35 ..       2      43 .. 0.81
   2 !   26.4   0.0   1.5e-09   3.4e-06     100     219 ..      63     184 ..      51     242 .. 0.78
   3 ?    1.4   0.0     0.063   1.4e+02     326     340 ..     298     312 ..     289     314 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.16
  K_oxygenase 188 llakkriaVvGsGqSaaeifedllrr 213
                  +  ++r+aV+G G ++   +++ll++
   KKY14082.1  10 RVVGNRVAVIGLGLTGIATLKNLLEE 35 
                  56689***********9999999987 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 1.5e-09
  K_oxygenase 100 dYlrWvasqle....eqvrfgeeveevepdeeeeeelltveskd.aegeeeelearnlvlgvG..tepkiPevleklegkervvHsseylerkeella 190
                  +Y++  a+ +e    ++++ g ++++++ +++ ++  + +++++ ++g+ ++    ++v+++G   ++ +P+v  + + k +v+H++e+   +    +
   KKY14082.1  63 QYIEDYAKYFElsrkNRCQLGVRIDRIDRSKDGSQ--WAIDVNQgSHGS-RTELFDRVVVTTGpfHTAFMPKVEGAESFKGKVLHAQEFKDPE--VFK 155
                  45555555443322278***********9998755..555555536775.56667889*****88899****977777779********9987..8** PP

  K_oxygenase 191 kkriaVvGsGqSaaeifedllrrqkkvel 219
                  ++r++VvG   +aa+i+ dl + ++k+ +
   KKY14082.1 156 GQRVVVVGLSNTAADIAVDLSEVADKTYV 184
                  ********************988665433 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.063
  K_oxygenase 326 eetlevdavvlATGY 340
                   +  +vdav++ATGY
   KKY14082.1 298 VTLSSVDAVIFATGY 312
                  566789********* PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.3e-07   0.00051       1      47 [.      18      64 ..      18      87 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.3e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETTCEECT CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpgvrvdy 47
                   ++G Gl+G ++   L ++gfd + +e+++++GG +++y  ++++++y
     KKY14082.1 18 VIGLGLTGIATLKNLLEEGFDAVGFERHNHIGGLWRCYPSGEQVAQY 64
                   8999**********************************997744333 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1   0.00098       2.2       1      43 [.      17      53 ..      17      60 .. 0.80
   2 !    5.9   0.0    0.0051        11      91     155 ..      56     123 ..      52     124 .. 0.70
   3 ?   -1.0   0.0      0.69   1.5e+03     132     155 ..     288     312 ..     284     313 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00098
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwr 43
                   a++G G +G+a+l++Ll++      ++   f+++++  g+ wr
     KKY14082.1 17 AVIGLGLTGIATLKNLLEEG-----FDAVGFERHNHI-GGLWR 53
                   89***************995.....666667776665.56665 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0051
  NAD_binding_9  91 vpRalyGrYlrdlfeellarlpegvtvevhraevvdleeradgqavlladg....aslaadaVvLAlGh 155
                    ++   + +Y++d+++ +  + ++++++ v  +++ + ++  + +a+  ++g    ++  +d+Vv+++G 
     KKY14082.1  56 PSGEQVAQYIEDYAKYFELSRKNRCQLGVRIDRIDRSKDGSQ-WAIDVNQGshgsRTELFDRVVVTTGP 123
                    555667899999999999999999999987777766555443.4343333322235679********95 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.69
  NAD_binding_9 132 dgqavlladgasl.aadaVvLAlGh 155
                    dg  +  +++ +l  +daV+ A+G 
     KKY14082.1 288 DGHSIEFTNDVTLsSVDAVIFATGY 312
                    566667777777769********96 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.2    0.0038       8.5       1      33 [.      15      49 ..      15      79 .. 0.88
   2 !    8.1   0.0   0.00079       1.8     145     235 ..      61     153 ..      44     224 .. 0.72
   3 ?   -1.9   0.0      0.88     2e+03     192     205 ..     302     315 ..     284     384 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0038
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiag 33
                +v++iG G +G++t   L ++g   + +e+++ +g
  KKY14082.1 15 RVAVIGLGLTGIATLKNLLEEGfdAVGFERHNHIG 49
                59****************99999999999998887 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00079
                 HHHHHHHHHHHH.HHTT-EEEESECEEEEEE.EETCEEEEE.EECT.EEE.EEEEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHST CS
         DAO 145 pakltaalaraa.ealGveilegtevtglee.edgkvwgve.rttp.gen.daadavVnaaGawsd.llgllkeldlpispvrgqvlvlkplseklv 235
                  a+++  +a+ +  ++  ++ +g ++ ++++ +dg  w +  ++ + g++ + +d vV+++G++ + ++   ++++   + ++g vl+ ++ ++++v
  KKY14082.1  61 VAQYIEDYAKYFeLSRKNRCQLGVRIDRIDRsKDGSQWAIDvNQGShGSRtELFDRVVVTTGPFHTaFM---PKVE-GAESFKGKVLHAQEFKDPEV 153
                 56666666666634556788899999999664669999996643343554333477********87555...4442.33778888888766665444 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.88
                 EEEEEEE--GGGHH CS
         DAO 192 aadavVnaaGawsd 205
                 ++dav+ a+G   d
  KKY14082.1 302 SVDAVIFATGYLFD 315
                 46777777776555 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.33   7.3e+02       1      33 [.      15      47 ..      15      70 .. 0.77
   2 ?   10.3   0.0   0.00036       0.8       1      35 [.     158     192 ..     158     214 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.33
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdk 33
                +v+v+G G++g+   ++l e g +   +er+++
  KKY14082.1 15 RVAVIGLGLTGIATLKNLLEEGFDAVGFERHNH 47
                799********9887777777666555555555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00036
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkll 35 
                 +vvvvG ++++ + A  l+e ++k++v +rs  + 
  KKY14082.1 158 RVVVVGLSNTAADIAVDLSEVADKTYVSHRSGAFI 192
                 79****************************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.51
# Mc/sec: 2978.51
//
Query:       KKY14083.1  [L=336]
Description: putative 2-nitropropane dioxygenase family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-56  190.1   0.2    4.2e-55  187.4   0.2    1.8  1  NMO           Nitronate monooxygenase
    9.5e-13   47.9   0.1    1.2e-11   44.3   0.1    2.1  1  IMPDH         IMP dehydrogenase / GMP reductase domain
     0.0023   17.0   0.2     0.0036   16.4   0.2    1.3  1  FMN_dh        FMN-dependent dehydrogenase
  ------ inclusion threshold ------
      0.071   12.2   0.6       0.16   11.1   0.7    1.6  1  Glu_synthase  Conserved region in glutamate synthase
      0.091   11.6   0.0       0.14   11.1   0.0    1.2  1  DUF1729       Domain of unknown function (DUF1729)


Domain annotation for each model (and alignments):
>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.4   0.2   1.2e-58   4.2e-55       2     328 ..       5     309 ..       4     312 .. 0.87

  Alignments for each domain:
  == domain 1  score: 187.4 bits;  conditional E-value: 1.2e-58
         NMO   2 slltellkikppvvqpgmggiskarLaaavsnaGgLGvlasgyl.taDrlakeirkvkaltdkPfgvnlflpkkdaadraekykkeleeaalelnieeg 99 
                 + lt  l+ik pvvq+gm ++  a+La+avsnaGgLG+l + ++ t+  l+keir+ + +t++Pfgvn+ l  + + ++          a +++ ieeg
  KKY14083.1   5 TELTRRLGIKVPVVQGGMQWVGYAELASAVSNAGGLGILTALTQpTPEDLRKEIRRCRGMTSNPFGVNITLLPAIVPPD-------Y-TAYAKVVIEEG 95 
                 56788899*******************************96543399**********************9987777777.......2.36778999*** PP

         NMO 100 vrfyrkvevvldekvevvsfgfglpteevvarlkeagvvliptissvkearkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavdiPviA 198
                 ++              +v  ++g  +  v++ lke +++++   +++ +a+ ++++G D l ++G e  Gh G+ ++     f L+ ++++ ++ P iA
  KKY14083.1  96 IK--------------IVE-TAGNSPGPVIKLLKENDIIILHKCTTIRHAQSAIKLGVDFLSIDGFECAGHVGESDI---TNFILLSRARQSLKTPFIA 176
                 *9..............555.556666999999*****************************************6666...69***************** PP

         NMO 199 aGGiidrrgvaaaLalGAsgvqigtrfLltkesdakdahkkklleaklddteltsavsGrpaRalatelleelee.akiatla..lpeahelakk.ira 293
                  GG+ d++g+aaaLalGA+g+ +gtrf+ t e++ +   k+ +++a + dt l+ +      R  ++++++e+ +  k+ t +   ++++ + +k  r+
  KKY14083.1 177 SGGFADGHGLAAALALGAEGINMGTRFMCTVEAPIHSKIKQTIVDADETDTALVLRRWRNTTRLFKNKVTNEVVKiEKESTRGefQEVQPLMSGKrGRE 275
                 **********************************************999998776666599*********99887544444431133445666663555 PP

         NMO 294 alveagnteegllwagqgidrldkiisvkeLiesL 328
                   ++ g++e g+  agq+i+ +++++++keL+  +
  KKY14083.1 276 VFLN-GDKEFGVWTAGQVIGLIHDVPTCKELVGRI 309
                 5555.5*************************9766 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.1   3.3e-15   1.2e-11      24     251 ..       4     215 ..       1     220 [. 0.83

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 3.3e-15
                 -EESSTTEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SS..S-HHHHHHHHHHHHTSTTSXBXTTSXB-EEEEE-SSTTHHHHHHHHHHTT-SEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  24 ktkltkkiklniPlvsaamdtvtesemAialareGgigvihkn..lsieeqaeevkkvkrspnaakdekgrllvgaavgvkedalervkalveagvdvl 120
                 +t+lt+++ +++P+v   m++v  +e+A a++++Gg+g++      ++e+  +e+++ + +   ++    +++   a+    d+++ +k ++e+g+ + 
  KKY14083.1   4 NTELTRRLGIKVPVVQGGMQWVGYAELASAVSNAGGLGILTALtqPTPEDLRKEIRRCRGMT--SNPFGVNITLLPAIVPP-DYTAYAKVVIEEGIKI- 98 
                 79**************************************8751156788889999998444..33444455555667655.899**********986. PP

                 EEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SS-STTBHHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES---SH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 121 vvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvGiGpGsiCttrvvagvGvpqltAvaevaeaakkagvpviaDGGikys 219
                  v++a         ++k +k++   + +i    +t   a++ i+ g+d++ +    G  C       vG + +t  +  ++a ++ + p ia GG    
  KKY14083.1  99 -VETAGNSPGP---VIKLLKEND--I-IILHKCTTIRHAQSAIKLGVDFLSI---DGFECAG----HVGESDITNFILLSRARQSLKTPFIASGGFADG 183
                 .5777544444...466666665..4.89999*****************987...4666654....58******************************* PP

                 HHHHHHHHTT-SEEEESCCCTTBTTSSSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 220 gdivkAlaaGadavmlGsllagteEspgevil 251
                 + ++ Ala+Ga+ + +G  +  t E+p +  +
  KKY14083.1 184 HGLAAALALGAEGINMGTRFMCTVEAPIHSKI 215
                 **************************976655 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2     1e-06    0.0036     225     309 ..     125     209 ..     114     232 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1e-06
                 -SHHHHHHHHHTTESEEEE--..GGGTSSTT---HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHH CS
      FMN_dh 225 ltaedakraveaGvdgivvSN..HGGRqldgapatidvLpeiveavggrievlvDgGirrGsDvlkAlalGAdavllGRpflyglaa 309
                  t + a+ a+++Gvd + +      G+  ++ ++ +  L + ++ ++  ++ +++gG+  G   + AlalGA+++ +G  f+  + a
  KKY14083.1 125 TTIRHAQSAIKLGVDFLSIDGfeCAGHVGESDITNFILLSRARQSLK--TPFIASGGFADGHGLAAALALGAEGINMGTRFMCTVEA 209
                 56677888888888887776422578888888999999999999997..9****************************999887665 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.7   4.5e-05      0.16     276     310 ..     173     207 ..     126     215 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.5e-05
                   EEEEESS--SHHHHHHHHHHT-SEEE-SHHHHHHT CS
  Glu_synthase 276 sliadGglktgadvvkalalGAdavgigtaalial 310
                     ia+Gg+  g+ ++ alalGA+ +++gt  + ++
    KKY14083.1 173 PFIASGGFADGHGLAAALALGAEGINMGTRFMCTV 207
                   4689**************************99876 PP

>> DUF1729  Domain of unknown function (DUF1729)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.8e-05      0.14      68     109 ..     192     237 ..     166     256 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.8e-05
     DUF1729  68 mPvdgillgsavmvakEaktseevkqlivetpGvkde....eWeat 109
                 +  +gi +g++ m + Ea   +++kq iv+++  + +     W++t
  KKY14083.1 192 LGAEGINMGTRFMCTVEAPIHSKIKQTIVDADETDTAlvlrRWRNT 237
                 45689*************************9987655666678777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2299.02
//
Query:       KKY14084.1  [L=262]
Description: putative ww domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-09   35.8   0.7    1.5e-08   34.6   0.7    1.7  1  WW        WW domain
  ------ inclusion threshold ------
       0.12   12.8   0.5       0.44   10.9   0.5    2.0  1  WRW       Mitochondrial F1F0-ATP synthase, subunit f


Domain annotation for each model (and alignments):
>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.7   1.7e-12   1.5e-08       3      31 .]      84     112 ..      83     112 .. 0.97

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 1.7e-12
                 TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   3 pGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 +GW  +wd++ + +Y+yN +Tg +qWe P
  KKY14084.1  84 DGWAPVWDDNAQAFYFYNRFTGLSQWENP 112
                 6**************************99 PP

>> WRW  Mitochondrial F1F0-ATP synthase, subunit f
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5   4.9e-05      0.44       8      26 ..     137     155 ..     133     215 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.9e-05
         WRW   8 eYnpkvhGpYdparyYgkk 26 
                  Y+p++hG Ydp   Y+k+
  KKY14084.1 137 GYDPAIHGDYDPNADYAKA 155
                 6***************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1168  (0.0651459); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.51
# Mc/sec: 1547.66
//
Query:       KKY14085.1  [L=1105]
Description: putative garp complex component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-49  166.0   0.4    5.6e-49  166.0   0.4    3.4  4  Vps54     Vps54-like protein
    9.5e-09   35.0   0.1    3.2e-08   33.2   0.1    1.8  1  Vps54_N   Vacuolar-sorting protein 54, of GARP complex
  ------ inclusion threshold ------
       0.02   15.3   1.8      0.053   13.9   0.2    2.5  2  DUF3510   Domain of unknown function (DUF3510)
        0.2   11.7   1.0       0.82    9.8   1.0    2.1  1  COG2      COG (conserved oligomeric Golgi) complex component,
       0.84   10.2   5.9       0.27   11.8   1.3    2.6  2  DUF16     Protein of unknown function DUF16


Domain annotation for each model (and alignments):
>> Vps54  Vps54-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       2.4   8.6e+03      91     119 ..     292     324 ..     278     330 .. 0.56
   2 ?   -0.3   0.1      0.38   1.4e+03      74     120 ..     501     550 ..     497     557 .. 0.71
   3 ?   -1.6   0.1      0.94   3.4e+03      89     128 ..     714     755 ..     712     756 .. 0.67
   4 !  166.0   0.4   1.6e-52   5.6e-49       1     134 []     805     936 ..     805     936 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.4
       Vps54  91 ealerhl....eeksqesllaefdkvkrdyqeh 119
                 ++++        ++++++++++++++++d+++ 
  KKY14085.1 292 SFFSALGslreLHSEAAESVKRIQRLRQDLSKL 324
                 333333355555667777778888888887665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.38
       Vps54  74 lasqslslvialipyvkealerhl...eeksqesllaefdkvkrdyqehq 120
                 +as + +l + l++ +k+ +++hl   +++ +es+++  ++  +++++h+
  KKY14085.1 501 TASAAAALKTILLKEMKALIRKHLpssTDDDTESMVSTSTRGGKQLSQHE 550
                 57888889999999999999999976655556666666555555555554 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.94
       Vps54  89 vkealerhl.eeksqesllaefdkv.krdyqehqneihaKLv 128
                 +ke++++ + ++ +q +++ + dk   +d+ e +n + +K++
  KKY14085.1 714 IKEFVSQFVeQQRQQMITVMDSDKWdAKDFGEKENRLLSKIL 755
                 677777775333555566666777625789999999999986 PP

  == domain 4  score: 166.0 bits;  conditional E-value: 1.6e-52
       Vps54   1 eekfvvvesallllkmieeYlelakelpslaseilsrllelLklfNsrtcqliLgAgAtrsagLktItakhLalasqslslvialipyvkealerhlee 99 
                 e+++++ esal +l++ie++ +la+ lpsl ++ +  ll++Lk fNsr++qliLgAgAtrsagLk+It+khLalasq+ls++i+lipy++e+++rhl  
  KKY14085.1 805 EQRYILAESALKVLSVIEKFQHLATGLPSLGQDTTIGLLDCLKIFNSRSSQLILGAGATRSAGLKNITTKHLALASQALSFIITLIPYLREFFRRHLL- 902
                 589*********************************************************************************************55. PP

       Vps54 100 ksqesllaefdkvkrdyqehqneihaKLvsImedr 134
                  +++sll efdkvkr+yqehq  ih+KLv+Im +r
  KKY14085.1 903 -QNSSLLGEFDKVKRLYQEHQIGIHEKLVEIMGQR 936
                 .889999*************************987 PP

>> Vps54_N  Vacuolar-sorting protein 54, of GARP complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1   8.9e-12   3.2e-08      38     157 ..     269     388 ..     256     393 .. 0.94

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 8.9e-12
     Vps54_N  38 kklksqhdvvskklsqlilekreefvkelseveeiekelkesvvickngrraLdlakkeltrtsLellakskkrqllkkllktltaikelrelekrlee 136
                 +kl+ ++d v+ +l   i   +++f + l+ ++e+++e  esv+ ++  r+ L+   k+++r  L+++  +++r+   kl + ++++  + e  k+lee
  KKY14085.1 269 EKLSWYMDTVEIHLISSISTASKSFFSALGSLRELHSEAAESVKRIQRLRQDLSKLDKQMARGGLKIVNLKQRRENGRKLGDAMRQLHCIVESVKELEE 367
                 678999********************************************************************************************* PP

     Vps54_N 137 lleeedysaAiqllletkqla 157
                  ++++dy  A++ l  +++l+
  KKY14085.1 368 RVDNGDYEPAMDGLDGVERLI 388
                 **********99877666665 PP

>> DUF3510  Domain of unknown function (DUF3510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       1.1   4.1e+03      76     114 ..     305     320 ..     254     343 .. 0.54
   2 ?   13.9   0.2   1.5e-05     0.053      22      83 ..     952    1011 ..     931    1026 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.1
     DUF3510  76 etisevlssvkkteesLkrlkkarkgaaasanggeeasD 114
                 ++++e ++ +++  +                       D
  KKY14085.1 305 SEAAESVKRIQRLRQ-----------------------D 320
                 222222222222222.......................3 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.5e-05
     DUF3510   22 RrtnkevptepSkyvseilkplktfkkesekklseevleewlaevleevtsrYletisevls 83  
                   +  k+ +++ S+yv++++k + t++k  +k+l+e +++ +++ v+ +  ++++++ +ev  
  KKY14085.1  952 AA--KNKSQTISPYVETLVKETGTLHKVLAKNLPEMTVTMIMNPVFASYREQFTKAFQEVSL 1011
                  33..556899***************7666666888888888888888888888877777653 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.0   0.00023      0.82      31     130 ..     267     366 ..     262     369 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00023
        COG2  31 lrrdLeaylkllekellelvnedyadFvslSghLvglqeeleevesplaaarkkvesvreklsereeeveskleeakeleekrellklllkldevvekl 129
                 l++ L  y+  +e +l++++ +  + F+s  g+L+ l +e  e  + ++++r++++++ +++++   ++ +  + +++ ++    ++ l  + e v++l
  KKY14085.1 267 LQEKLSWYMDTVEIHLISSISTASKSFFSALGSLRELHSEAAESVKRIQRLRQDLSKLDKQMARGGLKIVNLKQRRENGRKLGDAMRQLHCIVESVKEL 365
                 889999********************9999999**9999999999999999999999999999999888665555555555556666666666666666 PP

        COG2 130 e 130
                 e
  KKY14085.1 366 E 366
                 5 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.3   7.4e-05      0.27      38     101 ..     309     371 ..     301     373 .. 0.90
   2 ?   -3.3   0.2       3.5   1.3e+04      64      80 ..     714     731 ..     706     756 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.4e-05
                 HHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHH CS
       DUF16  38 kieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkinkRlDs 101
                 ++ ++++ l + ++kl +++ + g ki +lk++ +  ++ l    + l+ i+e+++++++R+D+
  KKY14085.1 309 ESVKRIQRLRQDLSKLDKQMARGGLKIVNLKQRRENGRK-LGDAMRQLHCIVESVKELEERVDN 371
                 5567899999********************999887666.99999*****************96 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.5
                 HHHHHHH.HHHHHH.... CS
       DUF16  64 ikelkve.qkaqgeelnk 80 
                 ike   + +++q++++ +
  KKY14085.1 714 IKEFVSQfVEQQRQQMIT 731
                 333322213444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.51
# Mc/sec: 6532.26
//
Query:       KKY14086.1  [L=519]
Description: putative dna replication licensing factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-106  354.4   0.2   8.5e-106  352.1   0.0    1.9  2  MCM              MCM P-loop domain
    8.7e-29   99.8   1.7    2.1e-28   98.5   1.7    1.7  1  MCM_lid          MCM AAA-lid domain
    7.9e-20   71.0   0.0    1.6e-19   70.0   0.0    1.6  1  MCM_OB           MCM OB domain
    1.9e-06   27.4   0.0    0.00049   19.5   0.0    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    1.2e-05   25.4   0.0    3.7e-05   23.8   0.0    1.8  2  AAA_5            AAA domain (dynein-related subfamily)
    0.00017   21.5   0.0    0.00061   19.6   0.0    1.9  1  AAA_3            ATPase family associated with various cellul
  ------ inclusion threshold ------
      0.014   15.1   0.0       0.75    9.5   0.0    2.5  2  Sigma54_activat  Sigma-54 interaction domain
       0.06   13.8   0.2       0.27   11.7   0.0    2.1  2  AAA              ATPase family associated with various cellul
       0.16   12.1   0.0       0.37   11.0   0.0    1.5  1  Imm35            Immunity protein 35


Domain annotation for each model (and alignments):
>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  352.1   0.0  4.2e-109  8.5e-106       2     224 .]     106     328 ..     105     328 .. 0.99
   2 ?   -0.2   0.0      0.21   4.3e+02       5      50 ..     398     443 ..     396     455 .. 0.84

  Alignments for each domain:
  == domain 1  score: 352.1 bits;  conditional E-value: 4.2e-109
                 HHHHHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSSSE CS
         MCM   2 veeikelakekdiieklvksiapsiyghedvkkaillqlfggvkkkledktklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaagLtaa 100
                 ++e+ el++++di++ l++siapsiyg++d+kkai+++l+gg+kk l+d++klrgdinvll+gdpgtaKsqlLk+vek++p a+ytsgkgssaagLta+
  KKY14086.1 106 EQEFLELSRRPDIYRALANSIAPSIYGNDDIKKAITCLLMGGSKKILPDGMKLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAIYTSGKGSSAAGLTAS 204
                 68999********************************************************************************************** PP

                 EEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--SSSSCCTTS-HHHHSSSSHHHHHHSS CS
         MCM 101 vvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpkagrydkkksvaeninlsaalLsrFD 199
                 v+rd++t+ef+le+Ga+vlad+Gv+ciDefdkm++edr+a+hEamEqqtisiaKaGi+++Ln+rtsvlaAanp++gryd+ ks  eni++++++LsrFD
  KKY14086.1 205 VQRDTQTREFYLEGGAMVLADGGVVCIDEFDKMRDEDRVAIHEAMEQQTISIAKAGITTILNSRTSVLAAANPIFGRYDDLKSPGENIDFQTTILSRFD 303
                 *************************************************************************************************** PP

                 EEEEE-SSTTHHHHHHHHHHHHHHH CS
         MCM 200 lifvllDkvdeekDeelaehivslh 224
                 +if+++D++++e+De++a+h++ +h
  KKY14086.1 304 MIFIVRDDHNRERDESIAKHVMGIH 328
                 *********************9876 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.21
                 HHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSS CS
         MCM   5 ikelakekdiieklvksiapsiyghedvkkaillqlfggvkkkled 50 
                 i++l++  +i+e+l+k   + +  +e+v +ai l l ++++  ++ 
  KKY14086.1 398 IRQLEAIVRITESLAKLQLQPVATEEHVDEAIRLFLASTMDAVTQG 443
                 7788888899999*********************999988876654 PP

>> MCM_lid  MCM AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   1.7   1.1e-31   2.1e-28       2      86 ..     346     435 ..     345     436 .. 0.93

  Alignments for each domain:
  == domain 1  score: 98.5 bits;  conditional E-value: 1.1e-31
                 HHHHHHHHHHHTT--BETCHHHHHHHHHHHHHHHHH.....TSS.TSSSST--HHHHHHHHHHHHHHHHHHTSSSE-HHHHHHHHHHHHHH CS
     MCM_lid   2 llrkYiayarekikPklseeakeklseaYvelRkee.....eds.krksipitvRqLesliRLseAlAklrlsevvteedveeairllkes 86 
                 ++++Yi+y+++++ P+ls+ea+ekls+++v++Rk+        + +r+sipit RqLe+++R++e+lAkl+l+ v+tee+v+eairl+ +s
  KKY14086.1 346 KMKRYISYCKSRCAPRLSPEAAEKLSSHFVSIRKQVrqaemD-AnQRSSIPITIRQLEAIVRITESLAKLQLQPVATEEHVDEAIRLFLAS 435
                 79********************************99877753.2489****************************************9887 PP

>> MCM_OB  MCM OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.0   8.3e-23   1.6e-19      63     125 ..       2      64 ..       1      65 [. 0.96

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 8.3e-23
                 H-EEE-GGGSEEEEEEEEEEE-------------EEEEEEEGGGTT---TT-EEEEEEEEEEE CS
      MCM_OB  63 dpfkletekskfvdfqklklQEspeevpaGelPrslevileddlvdkvkPGdrvevtGiyral 125
                 dp+ +++e++ f+d+q +klQE+p++vp+GelPr++ v ++++l+++v PG+r++v+G+++++
  KKY14086.1   2 DPYFVVHERCAFIDQQVIKLQEAPDQVPVGELPRHILVSADRYLCNRVVPGSRCTVMGVFSIY 64 
                 68999*******************************************************986 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0042       8.3      21      47 ..     160     186 ..     155     215 .. 0.84
   2 !   19.5   0.0   2.5e-07   0.00049      98     159 ..     217     278 ..     196     302 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0042
  Mg_chelatase  21 GgHnlllvGppGsGKtmlakrlpsllp 47 
                   G  n+ll+G pG+ K+ l k ++++ p
    KKY14086.1 160 GDINVLLLGDPGTAKSQLLKFVEKVSP 186
                   7889*************9998887766 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 2.5e-07
  Mg_chelatase  98 kpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpc 159
                   + G++ la  Gv+ +DE+ +++ +   ++ e +e+++++i++a  ++   +r+ ++aa+Np 
    KKY14086.1 217 EGGAMVLADGGVVCIDEFDKMRDEDRVAIHEAMEQQTISIAKAGITTILNSRTSVLAAANPI 278
                   57999*******************************************************96 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.8e-08   3.7e-05       1     123 [.     163     278 ..     163     288 .. 0.83
   2 ?   -2.6   0.0       2.5     5e+03      67      80 ..     448     461 ..     410     466 .. 0.67

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.8e-08
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--..........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..- CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik.ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrlllee 98 
                 +vlL+G+pGt+Ks+l + + ++  +++ ++   ++ +++ l+ +++ + + ++ + ++ ++     g ++++DE++++++e   + +  +e++++++++
  KKY14086.1 163 NVLLLGDPGTAKSQLLKFVEKV--SPIAIYTSGKGSSAAGLTASVQRDtQTREFYLEGGAM-VLADGGVVCIDEFDKMRDEDRVAIHEAMEQQTISIAK 258
                 69*************9999997..7999999***********9999776555555555555.688*******************************888 PP

                 SSSEEE---......-EEEEEESS- CS
       AAA_5  99 ggelvkaknddllerfrviatanpl 123
                  g  +  ++      ++v+a+anp 
  KKY14086.1 259 AGITTILNSR-----TSVLAAANPI 278
                 7766655553.....7888888885 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.5
                 SEEEEESGGG--HH CS
       AAA_5  67 eilvlDEveraese 80 
                 +  ++DEv+++e e
  KKY14086.1 448 SREMMDEVNKVEEE 461
                 44456666666654 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   3.1e-07   0.00061       2     113 ..     164     278 ..     163     283 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.1e-07
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvf.an..llladeinrappktqsalleameerqvtve..g 95 
                 vll g PG+ak +l k + k+  + +           + ++ +   +++++ef ++ G+++ a+  ++  de ++     + a+ eame+++++++  g
  KKY14086.1 164 VLLLGDPGTAKSQLLKFVEKVSPIAIYTSG--KGSSAAGLTASVQRDTQTREFYLEGGAMVlADggVVCIDEFDKMRDEDRVAIHEAMEQQTISIAkaG 260
                 677788888888888877776655543322..233456677777778899********976233559*************************9987225 PP

       AAA_3  96 ethklpepflvlatqnPi 113
                  t+ l++   vla+ nPi
  KKY14086.1 261 ITTILNSRTSVLAAANPI 278
                 6889*************8 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.045        90      21      45 ..     160     184 ..     153     192 .. 0.84
   2 ?    9.5   0.0   0.00038      0.75      87     142 ..     219     276 ..     210     307 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.045
                      SSS-EEEECSTTSSHHHHHHHHHHH CS
  Sigma54_activat  21 tdlsvlitGesGtGKellaraihea 45 
                       d++vl++G+ Gt K+ l + + + 
       KKY14086.1 160 GDINVLLLGDPGTAKSQLLKFVEKV 184
                      5799***********9998877665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00038
                      HHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEE..ESBTSSSEEE--EEEEEEES CS
  Sigma54_activat  87 GlfekadgGtlfLDeigelplelQekLlrvlqegev..ervGsskeikvdvriiaatn 142
                      G++  adgG++ +De  ++  e  + + ++++++++   + G ++  +  + ++aa+n
       KKY14086.1 219 GAMVLADGGVVCIDEFDKMRDEDRVAIHEAMEQQTIsiAKAGITTILNSRTSVLAAAN 276
                      8999***************************999752268899999999999998887 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00014      0.27       1      75 [.     164     246 ..     164     288 .. 0.58
   2 ?   -0.9   0.0       1.1   2.1e+03      65     120 ..     426     482 ..     367     490 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
                 EEEESSTTSSHHHHHHHHHHHHTHEE.EEEETTTCS.SSSTTHHHHHHHHHHHHHHHTS....TSEEEEEETGGGHHHHH....T CS
         AAA   1 vllyGppGtGKTllakavakelgvef.leisgsell.skyvgesekkirelfkeakeka....kpsilfiDEidalaksr....s 75 
                 vll G pGt K+ l k v k + + +  + +gs+        ++  ++re+  e    a    +  ++ iDE+d++  ++    +
  KKY14086.1 164 VLLLGDPGTAKSQLLKFVEKVSPIAIyTSGKGSSAAgLTASVQRDTQTREFYLEGG--AmvlaDGGVVCIDEFDKMRDEDrvaiH 246
                 79****************99977655245555555522233344445555554433..2447455***********666632221 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.1
                 ETGGGHHHHH.TTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHH CS
         AAA  65 DEidalaksr.sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpall 120
                 DE+ +l+ ++  ++ ++ e +   +++ e+++v+++ ++ + ig +++  +l ++++
  KKY14086.1 426 DEAIRLFLAStMDAVTQGEGQGSREMMDEVNKVEEELKRRLPIGWSTSLATLRREFV 482
                 444444444433444555566666677777777777666777777777777766655 PP

>> Imm35  Immunity protein 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00019      0.37      20      63 ..     455     500 ..     438     511 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00019
       Imm35  20 alrvapekvdelergWlfaynt..eafldtgdpeaqllngPlvVdk 63 
                 + +v+ e +++l+ gW+ +  t  ++f+d++   +q ln++lvV +
  KKY14086.1 455 VNKVEEELKRRLPIGWSTSLATlrREFVDGRGYSEQALNKALVVLQ 500
                 446999***************95567****************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 3344.41
//
Query:       KKY14087.1  [L=503]
Description: putative splicing factor 3a subunit 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-74  250.1   0.6    1.6e-74  249.7   0.1    1.5  2  DUF3449          Domain of unknown function (DUF3449)
      1e-23   83.6   0.4    3.8e-23   81.8   0.0    2.2  3  SF3A3            Pre-mRNA-splicing factor SF3A3, of SF3a comp
    4.2e-14   52.1   0.8    4.2e-14   52.1   0.8    1.9  2  SF3a60_bindingd  Splicing factor SF3a60 binding domain
    8.1e-09   35.6   2.3    6.5e-07   29.5   0.4    2.3  2  zf-met           Zinc-finger of C2H2 type
    4.1e-07   30.1   0.2    4.1e-07   30.1   0.2    2.6  2  zf-C2H2_jaz      Zinc-finger double-stranded RNA-binding
    0.00012   22.1  12.1      0.012   15.7   0.5    3.4  3  PRP9_N           Pre-mRNA-splicing factor PRP9 N-terminus
     0.0013   19.0   0.1      0.048   14.0   0.0    2.5  2  zf-C2H2_2        C2H2 type zinc-finger (2 copies)
  ------ inclusion threshold ------
       0.24   12.3   1.0         21    6.3   0.0    2.7  2  zf-C2H2_4        C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> DUF3449  Domain of unknown function (DUF3449)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1       5.1   1.1e+04     100     116 ..     259     275 ..     255     280 .. 0.73
   2 !  249.7   0.1   7.1e-78   1.6e-74       2     184 .]     311     502 ..     310     502 .. 0.90

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 5.1
                 XXXXXXXXXXXXXXXXX CS
     DUF3449 100 YkGrkaFekHFseerHa 116
                 ++  +++++H + ++H 
  KKY14087.1 259 FTNENVYKNHLTGKKHL 275
                 55567788888888886 PP

  == domain 2  score: 249.7 bits;  conditional E-value: 7.1e-78
                 HHHHHHHHHHTHHHHHHHHHHHHHHHT--HHHHHHH...................HH--SS--B-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF3449   2 elkikklaellskeieetkenverkqaltaeereee......eeeeeeek.....keeeedeeeeeeeekiynplnlplgwdgkPipyWLykLhgLgke 89 
                 e++i+kl+++l++e ++t+ nverkq++t++er++e      e     ++     +  +e+++e+++ee+iynpl+lpl+wdgkPipyWLykLhgLg+e
  KKY14087.1 311 EHRIRKLVQYLANEKSNTRVNVERKQGMTERERQQEldalfaE-----DDaavaaA-GRESDDESDSEERIYNPLKLPLAWDGKPIPYWLYKLHGLGVE 403
                 99**********************************8554432.....33333323.4444445589999***************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF3449  90 ykCeiCgnavYkGrkaFekHFseerHaeglkcLgie....ntklfkeitkiedaleLweklkkekkkekakeeeeveveDeeGnvmskkvYedLkkqgl 184
                 ++CeiCgn+vY+Gr+aF+kHFse+rH++glkcLgi+     + lf+ei  i++a++Lwek+k+ek+++++ke++ v++eD eGnvm++++Y dL+kqg+
  KKY14087.1 404 FSCEICGNFVYMGRRAFDKHFSEARHIYGLKCLGISgagaGSGLFREIIGIDEAVNLWEKIKREKREKEVKEDSIVQMEDGEGNVMPERIYYDLQKQGI 502
                 ***********************************976656789*****************************************************96 PP

>> SF3A3  Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         3   6.7e+03      15      21 ..      90      96 ..      59     113 .. 0.56
   2 !   81.8   0.0   1.7e-26   3.8e-23       1      79 []     126     209 ..     126     209 .. 0.93
   3 ?   -2.9   0.0       4.6     1e+04      56      67 ..     312     323 ..     301     333 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3
       SF3A3 15 nelyeey 21
                ++++++y
  KKY14087.1 90 KDFHRRY 96
                2233333 PP

  == domain 2  score: 81.8 bits;  conditional E-value: 1.7e-26
       SF3A3   1 lFsgeEqyGkylDLnelyeeylnlkeik.ldYlqYLesfdkf....seipkkqkkskeYkeYlkeLleYLesfikrtqpLedld 79 
                 +F+geE +G++lD+ +l+e+ylnl+++k l+YlqYL+ +d+f      i++++k s++Y +Y+++L  YLe f++rt+pL+dld
  KKY14087.1 126 MFTGEEGNGRFLDVVTLHEDYLNLPGVKrLSYLQYLDLLDAFtapqMPIKRQNKCSDKYLRYVSDLSGYLEGFVRRTRPLQDLD 209
                 7************************9977*************8855555588888**************************986 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4.6
       SF3A3  56 eYlkeLleYLes 67 
                 + +++L++YL +
  KKY14087.1 312 HRIRKLVQYLAN 323
                 556778888865 PP

>> SF3a60_bindingd  Splicing factor SF3a60 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       2.5   5.7e+03      13      19 ..      65      71 ..      65      71 .. 0.84
   2 !   52.1   0.8   1.9e-17   4.2e-14       1      27 []      72      98 ..      72      98 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.5
  SF3a60_bindingd 13 krLkeIK 19
                     +rLk+I+
       KKY14087.1 65 TRLKDIQ 71
                     59***96 PP

  == domain 2  score: 52.1 bits;  conditional E-value: 1.9e-17
  SF3a60_bindingd  1 sisggDpFseFYkrLkeIKdyHrkYPN 27
                     s+s+gDpF+eFYk+L+e Kd+Hr+YPN
       KKY14087.1 72 SLSTGDPFEEFYKQLNEAKDFHRRYPN 98
                     79************************9 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.4   2.9e-10   6.5e-07       2      25 .]     251     274 ..     250     274 .. 0.98
   2 !    5.7   0.1     0.009        20       1      20 [.     404     424 ..     404     425 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 2.9e-10
      zf-met   2 yCelCnvtfnsesqlksHlqGKkH 25 
                 +C  C + f++e+++k+Hl GKkH
  KKY14087.1 251 WCADCEREFTNENVYKNHLTGKKH 274
                 9*********************** PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.009
      zf-met   1 fyCelC.nvtfnsesqlksHl 20 
                 f Ce+C n ++ ++ +++ H+
  KKY14087.1 404 FSCEICgNFVYMGRRAFDKHF 424
                 79********99999999997 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.2   1.8e-10   4.1e-07       3      26 ..     251     274 ..     249     275 .. 0.94
   2 ?   -0.0   1.8      0.53   1.2e+03       2      26 ..     404     429 ..     403     430 .. 0.64

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 1.8e-10
                  BBTTTTBBBSSHHHHHCCTTSHHH CS
  zf-C2H2_jaz   3 YCvlCdKyFksenaldnHlkSKkH 26 
                  +C  C++ F +en+++nHl++KkH
   KKY14087.1 251 WCADCEREFTNENVYKNHLTGKKH 274
                  799********************* PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.53
                  CBBTTTT.BBBSSHHHHHCCTTSHHH CS
  zf-C2H2_jaz   2 fYCvlCd.KyFksenaldnHlkSKkH 26 
                  f C++C    +   +a+d+H++  +H
   KKY14087.1 404 FSCEICGnFVYMGRRAFDKHFSEARH 429
                  56666655555556788888887666 PP

>> PRP9_N  Pre-mRNA-splicing factor PRP9 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.5   7.3e-05      0.16       2      29 ..       2      29 ..       1      33 [. 0.94
   2 !   15.7   0.5   5.1e-06     0.012      69     126 ..      32      94 ..      29     112 .. 0.82
   3 ?    0.9   0.7      0.19   4.3e+02      64     113 ..     299     349 ..     260     377 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.3e-05
      PRP9_N  2 lleerrslleeleviEdaIssRlqRnPe 29
                ++e++r + e++e +E++Is+Rl  +P+
  KKY14087.1  2 IVEDQRFIHEDIERLEQGISDRLAEDPK 29
                579*********************9996 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 5.1e-06
      PRP9_N  69 kqillQqhEinlFledykkklksleklkeeadseelkdke.....kslekfkelleeikekek 126
                 k  l  +hEi+ Fl++++++ ++l ++ ++++ ++lkd +     + +e+f ++l+e k+ + 
  KKY14087.1  32 KERLNRDHEISGFLNRIQEQSRRLLDIYKDTEGTRLKDIQslstgDPFEEFYKQLNEAKDFHR 94 
                 6667789********************99988888888889999999********99887554 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.19
      PRP9_N  64 skr.srkqillQqhEinlFledykkklksleklk.eeadseelkdkekslek 113
                  +r + + i+  +h i+++++   ++++++ +++ e+++  + ++++++l+ 
  KKY14087.1 299 GQRlKERVIASHEHRIRKLVQYLANEKSNT-RVNvERKQGMTERERQQELDA 349
                 445467788888999999887665555544.554133233333333344433 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.1e-05     0.048      51      83 ..     250     282 ..     240     289 .. 0.85
   2 ?    2.0   0.0      0.12   2.6e+02      47      76 ..     400     430 ..     393     434 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.1e-05
   zf-C2H2_2  51 leClyCekefkslealreHmkkkgHckineeee 83 
                   C  Ce+ef++ + +++H++ k+H + +e ++
  KKY14087.1 250 IWCADCEREFTNENVYKNHLTGKKHLRAAEANK 282
                 67************************9876543 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.12
   zf-C2H2_2  47 ieekleClyCeke.fkslealreHmkkkgHc 76 
                 +  +++C +C++     ++a+ +H ++++H 
  KKY14087.1 400 LGVEFSCEICGNFvYMGRRAFDKHFSEARHI 430
                 455799****9987779*************6 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0092        21       2      20 ..     251     269 ..     250     272 .. 0.87
   2 ?    3.9   0.2     0.055   1.2e+02       1      20 [.     404     424 ..     404     426 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0092
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHl 20 
                 +C  C + F++ + +++Hl
  KKY14087.1 251 WCADCEREFTNENVYKNHL 269
                 699******88888999*8 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.055
   zf-C2H2_4   1 fkCpiC.gksFsskkaLlrHl 20 
                 f C+iC + ++  ++a+ +H+
  KKY14087.1 404 FSCEICgNFVYMGRRAFDKHF 424
                 89****777777777788886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1001  (0.0558313); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3258.10
//
Query:       KKY14088.1  [L=202]
Description: putative dna repair protein rad5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-07   30.7   7.6    3.7e-07   29.9   7.6    1.5  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    2.2e-07   30.6   4.4    4.1e-07   29.8   4.4    1.4  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    6.2e-07   29.2   4.3    1.2e-06   28.2   4.3    1.4  1  Prok-RING_4   Prokaryotic RING finger family 4
    1.6e-06   27.9   4.6    3.1e-06   26.9   4.6    1.5  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    3.8e-06   26.8   3.6    1.1e-05   25.3   2.4    2.2  2  zf-RING_UBOX  RING-type zinc-finger
    1.9e-05   24.9   7.2    3.6e-05   24.0   7.2    1.5  1  zf-RING_2     Ring finger domain
     0.0049   17.1   3.0     0.0058   16.9   1.9    1.6  1  zf-HC5HC2H    PHD-like zinc-binding domain
     0.0052   16.7   6.2      0.013   15.5   5.9    1.8  1  zf-RING_5     zinc-RING finger domain
  ------ inclusion threshold ------
      0.011   15.5   3.8      0.026   14.3   3.8    1.7  1  zf-RING_4     RING/Ubox like zinc-binding domain
      0.016   15.4   5.9      0.056   13.6   6.2    1.8  2  zf-C3HC4_4    zinc finger of C3HC4-type, RING
      0.024   15.0   6.5      0.033   14.5   6.5    1.1  1  OmpH          Outer membrane protein (OmpH-like)
      0.044   13.1  10.0      0.063   12.6  10.0    1.2  1  DUF4763       Domain of unknown function (DUF4763)
       0.13   11.2   7.7       0.16   10.8   7.7    1.1  1  Spc7          Spc7 kinetochore protein
       0.15   11.6   4.7       0.19   11.3   4.7    1.1  1  Exonuc_VII_L  Exonuclease VII, large subunit
       0.22   11.7  11.7       0.47   10.7  11.8    1.4  1  CENP-Q        CENP-Q, a CENPA-CAD centromere complex subunit
       0.23   11.5  11.1       0.65   10.0   1.4    2.1  2  DUF1043       Protein of unknown function (DUF1043)
       0.33   11.0   9.4        1.3    9.1   0.3    2.3  2  Spc42p        Spindle pole body component Spc42p
        0.6    9.8   6.9        1.1    9.0   6.9    1.4  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
          1    9.5   7.0       0.36   11.0   3.7    2.0  2  zf-RING_10    zinc RING finger of MSL2
        1.1    9.4   8.1        1.6    8.9   0.7    2.1  2  CREPT         Cell-cycle alteration and expression-elevated p
        1.2    9.5   7.6        2.9    8.3   7.7    1.6  1  zf-rbx1       RING-H2 zinc finger domain
        1.3    6.8   3.0        1.6    6.6   3.0    1.0  1  V_ATPase_I    V-type ATPase 116kDa subunit family
        1.4    9.0   5.8        4.3    7.4   3.1    2.1  2  COG2          COG (conserved oligomeric Golgi) complex compon
        1.6    9.1  11.2       0.53   10.7   6.3    2.0  2  CENP-H        Centromere protein H (CENP-H)
        8.7    7.1   9.4         15    6.3   2.8    2.2  2  YabA          Initiation control protein YabA
        9.7    4.0   8.4         29    2.4   8.3    1.6  2  Prominin      Prominin


Domain annotation for each model (and alignments):
>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   7.6   5.4e-10   3.7e-07       1      40 []     122     161 ..     122     161 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 5.4e-10
  zf-C3HC4_2   1 kCpiCldmlkdpsvvtpCgHvfCqkCilrsLeekn..eCPlC 40 
                 +C++C   lkd+  + pCgH+ C++C++ +L +++   CP C
  KKY14088.1 122 RCTLCTVALKDA--MLPCGHTSCRECLHLWLGQGQgkGCPWC 161
                 6**********6..99***************9987769***9 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   4.4     6e-10   4.1e-07       3      47 ..     121     165 ..     119     167 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 6e-10
                 SB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH..TT-B-TTT--B- CS
  zf-C3HC4_3   3 eeCviClerprnvvllpCgHlvlCeeCaekllk..rkkkCpiCrrpi 47 
                   C +C  + ++++l pCgH+  C eC+  +l   + k Cp C+r+ 
  KKY14088.1 121 LRCTLCTVALKDAML-PCGHT-SCRECLHLWLGqgQGKGCPWCKRSF 165
                 68**********998.*****.********99889*********986 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   4.3   1.8e-09   1.2e-06       1      42 [.     123     167 ..     123     170 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.8e-09
  Prok-RING_4   1 CvlCgeqekkailepCgHlvCkeCfdsk....dlssCPlCqrrisk 42 
                  C lC+ + k+a+  pCgH  C+eC+  +    + ++CP C+r +++
   KKY14088.1 123 CTLCTVALKDAM-LPCGHTSCRECLHLWlgqgQGKGCPWCKRSFEA 167
                  99**99988875.5**************7744444*******9876 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   4.6   4.6e-09   3.1e-06       1      41 []     123     161 ..     123     161 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 4.6e-09
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41 
                 C +C+  +k+++  l+C+H+ C++C+  +l + + + CP C
  KKY14088.1 123 CTLCTVALKDAM--LPCGHTSCRECLHLWLGQGQGKGCPWC 161
                 99******9977..*****************888888**99 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   2.4   1.6e-08   1.1e-05       1      36 [.     123     156 ..     123     159 .. 0.75
   2 ?    0.4   0.0         1   7.1e+02       1       9 [.     158     166 ..     158     178 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.6e-08
  zf-RING_UBOX   1 CpIClelftdPlvlpCGHtFCreCl..welskslegaf 36 
                   C+ C   ++d  +lpCGHt CreCl  w    ++++  
    KKY14088.1 123 CTLCTVALKDA-MLPCGHTSCRECLhlW---LGQGQGK 156
                   99999999999.56***********544...4444444 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1
  zf-RING_UBOX   1 CpIClelft 9  
                   Cp C+ +f+
    KKY14088.1 158 CPWCKRSFE 166
                   *****9996 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   7.2   5.2e-08   3.6e-05       2      44 .]     122     162 ..     121     162 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 5.2e-08
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssst..CPlCr 44 
                  C++C+ +l+  d +l  pCgH+ +reCl  wl + +   CP C+
  KKY14088.1 122 RCTLCTVALK--DAML--PCGHTSCRECLHLWLGQGQGkgCPWCK 162
                 59***98885..4544..7**************888779*****7 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.9   8.4e-06    0.0058      21      67 ..     105     152 ..      92     167 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 8.4e-06
  zf-HC5HC2H  21 meeiedvekikkerkklkCylCkkk.vGaciqCskkkCkkafHvtCak 67 
                   ++e+ +k+ ++  +l+C+lC+   + a++ C +++C+++ H+  ++
  KKY14088.1 105 ANHLEGARKELEKVDHLRCTLCTVAlKDAMLPCGHTSCRECLHLWLGQ 152
                 5677888999999**********77679***************97665 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   5.9   1.8e-05     0.013      16      43 ..     133     162 ..     122     163 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.8e-05
   zf-RING_5  16 yltsCgHifCekClkkll..ekeavCpiCr 43 
                  +++CgH+ C +Cl+  l  ++ + Cp C+
  KKY14088.1 133 AMLPCGHTSCRECLHLWLgqGQGKGCPWCK 162
                 589************999999********8 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   3.8   3.8e-05     0.026      19      47 ..     136     165 ..     123     166 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.8e-05
   zf-RING_4  19 eCgyqiClfCyhrilee.eegrCPaCreeY 47 
                 +Cg+  C+ C+h  l + +++ CP C++ +
  KKY14088.1 136 PCGHTSCRECLHLWLGQgQGKGCPWCKRSF 165
                 69**********9888625778*****998 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       2.2   1.5e+03      35      42 .]     118     126 ..     111     126 .. 0.65
   2 ?   13.6   6.2   8.1e-05     0.056       1      42 []     123     161 ..     123     161 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.2
  zf-C3HC4_4  35 eq.llCplC 42 
                 ++ l+C+lC
  KKY14088.1 118 VDhLRCTLC 126
                 333899999 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 8.1e-05
  zf-C3HC4_4   1 CPiCldYLekPvsleCGhsfClsCisslqkepdgeqllCplC 42 
                 C  C+  L++   l+CGh+ C +C+  +  + +g+   Cp C
  KKY14088.1 123 CTLCTVALKDA-MLPCGHTSCRECLHLWLGQGQGK--GCPWC 161
                 77788888775.59************999998886..89999 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   6.5   4.8e-05     0.033      15     101 ..      26     114 ..      20     119 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.8e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.....-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  15 pegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle....keekeqelqkkeqelqqkqqqkaqelqkkqqellkpildkinka 101
                     +a  ++ +kf++  ++++++++ lq+ q+el+ + + le     e+ +++l+++ ++++q  + +++ l+ +++el +  l+ ++k 
  KKY14088.1  26 ASVVDAALDMRRKFSSVLKQVRQLKTTLQARQAELEHERQRLElrtiAETSRNKLRQQSRRMRQ-CKDDNRSLRLQNRELANH-LEGARKE 114
                 555566667777887777777777777777777777666665347778888888**********.888889999999888774.5555554 PP

>> DUF4763  Domain of unknown function (DUF4763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6  10.0   9.2e-05     0.063      49     140 ..      37     125 ..       2     131 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.2e-05
     DUF4763  49 ldLdeiydelekiKqrvlelrskLalnvpecPeidecvdedlelelltseqpeileLqrnnhkLrqqlaelqqhlkasrkslkelreslcqe 140
                   ++++ +++ ++K+ ++  + +L ++ +    ++  +  ++  ++l++++   ++ + +n  Lr q +el+ hl+  rk+l++++  +c +
  KKY14088.1  37 RKFSSVLKQVRQLKTTLQARQAELEHERQ---RLELRTIAETSRNKLRQQSRRMRQCKDDNRSLRLQNRELANHLEGARKELEKVDHLRCTL 125
                 467889999****************8854...77999999999********************************************99976 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   7.7   0.00023      0.16     158     242 ..      39     121 ..      24     133 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00023
        Spc7 158 LekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeq 242
                  ++  +++ +l+  l++++aele+e ++l+   + +++  +++L++  ++++++k + ++++ +  el + le  ++++e+++  
  KKY14088.1  39 FSSVLKQVRQLKTTLQARQAELEHERQRLEL--RTIAETSRNKLRQQSRRMRQCKDDNRSLRLQNRELANHLEGARKELEKVDHL 121
                 5677899999*******************99..5588999**********************************99999998765 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   4.7   0.00027      0.19     168     251 ..      36     117 ..      14     136 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00027
  Exonuc_VII_L 168 kqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerlkekleekkerlkklkerle.lleekkerlee 251
                   +++++++ +++++ ++ l++++ +l++ ++rle   ++ ++++r++l++ ++r++ ++++ +++l+ ++++l+ +le ++++le+
    KKY14088.1  36 RRKFSSVLKQVRQLKTTLQARQAELEHERQRLEL--RTIAETSRNKLRQQSRRMR-QCKDDNRSLRLQNRELAnHLEGARKELEK 117
                   3344445555555555555555555555555554..4445555555555554442.22222222222222222223333333332 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  11.8   0.00067      0.47      26     111 ..      24     108 ..      15     131 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00067
      CENP-Q  26 dfeklldekaaleaqLspelhslelLeaeiekeeralerdyeaLreLeknakaearerkeklkkehvllqesdseelslleassde 111
                 ++ +++d++   +++ s  l+++ +L+  ++  +++le + + L eL + a++ +++ +++ ++  +  + ++s  l+++e++++ 
  KKY14088.1  24 EYASVVDAALDMRRKFSSVLKQVRQLKTTLQARQAELEHERQRL-ELRTIAETSRNKLRQQSRRMRQCKDDNRSLRLQNRELANHL 108
                 588999999999999999*************9999999998887.58888888888877766775667777777777777777663 PP

>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.6     0.011       7.7      17      48 ..      37      68 ..      31      70 .. 0.87
   2 ?   10.0   1.4   0.00095      0.65      15      61 ..      72     118 ..      70     125 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.011
     DUF1043 17 rltnsklkkqkklekelekakaeleeqkqele 48
                r ++s lk+ ++l+++l++ +aele+ +q le
  KKY14088.1 37 RKFSSVLKQVRQLKTTLQARQAELEHERQRLE 68
                5566778999*******************997 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00095
     DUF1043  15 ilrltnsklkkqkklekelekakaeleeqkqeledHfaqsaelLetl 61 
                 i+ +  +kl++q++  ++ ++ +  l  q++el++H++ +++ Le+ 
  KKY14088.1  72 IAETSRNKLRQQSRRMRQCKDDNRSLRLQNRELANHLEGARKELEKV 118
                 56677899*******************************99999876 PP

>> Spc42p  Spindle pole body component Spc42p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   4.4      0.04        28       2      40 ..      41      85 ..      40      99 .. 0.77
   2 ?    9.1   0.3    0.0018       1.3       6      27 ..     100     121 ..      94     127 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.04
      Spc42p  2 klikQNKeLnkkldekqeEie......rLnvlvgslRaKLiKYte 40
                +++kQ ++L+++l+ +q E+e      +L+ ++++ R KL   + 
  KKY14088.1 41 SVLKQVRQLKTTLQARQAELEherqrlELRTIAETSRNKLRQQSR 85
                5789****************8555544589999999999987665 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0018
      Spc42p   6 QNKeLnkkldekqeEierLnvl 27 
                 QN+eL ++l++ ++E+e+ + l
  KKY14088.1 100 QNRELANHLEGARKELEKVDHL 121
                 *****************98776 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   6.9    0.0015       1.1       6      46 ..     122     159 ..     117     162 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0015
  Zn_ribbon_17   6 sCayCelavkgrvvlcgvCeHvlHasCarewfenddlaeCp 46 
                    C++C +a+k  ++    C+H    +C++ w+ +++ + Cp
    KKY14088.1 122 RCTLCTVALKDAMLP---CGHTSCRECLHLWLGQGQGKGCP 159
                   7*********99976...68***************988887 PP

>> zf-RING_10  zinc RING finger of MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       5.4   3.7e+03      41      54 ..      88      96 ..      74     108 .. 0.58
   2 ?   11.0   3.7   0.00053      0.36       1      44 [.     121     162 ..     121     172 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 5.4
  zf-RING_10 41 sqCkdyekyeenkq 54
                +qCkd     +n++
  KKY14088.1 88 RQCKD-----DNRS 96
                34442.....3333 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00053
  zf-RING_10   1 lsCvvCckLLvdPlepkekeCqHyvCrlCvgk..kkklkpsCsqCk 44 
                 l C+ C+  L+d + p    C+H  Cr C+     +     C++Ck
  KKY14088.1 121 LRCTLCTVALKDAMLP----CGHTSCRECLHLwlGQGQGKGCPWCK 162
                 67***********999....*********87411344456788888 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.7    0.0023       1.6      57     106 ..      19      67 ..      13      70 .. 0.78
   2 ?    3.2   4.7      0.13        90      73     121 ..      63     109 ..      57     113 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0023
       CREPT  57 lellaeYnkrLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 + + +eY +  +a l++R+k ++ l++  ++ k++l+  +++le+ +++l
  KKY14088.1  19 CDIGDEYASVVDAALDMRRKFSSVLKQVRQL-KTTLQARQAELEHERQRL 67 
                 667799*******************998775.566666666677666665 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.13
       CREPT  73 eRkklakmledfleaqkellakaeekleelkeklekvksvrkelkshiq 121
                 eR++l   l+++ e  +++l+++ ++++++k+  + ++ +++el +h++
  KKY14088.1  63 ERQRL--ELRTIAETSRNKLRQQSRRMRQCKDDNRSLRLQNRELANHLE 109
                 34444..59999**********************************986 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   7.7    0.0041       2.9      28      55 .]     133     162 ..     111     162 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0041
     zf-rbx1  28 vlGeCgHaFHlhCiskWlkt..rkvCPlcr 55 
                 ++  CgH+   +C++ Wl +   k CP c+
  KKY14088.1 133 AMLPCGHTSCRECLHLWLGQgqGKGCPWCK 162
                 4458***************986677****6 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   3.0    0.0023       1.6      20     100 ..      34     116 ..      16     132 .. 0.48

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0023
  V_ATPase_I  20 afqrkfvkevrrcdemerklrfleeeieklekavikeeea..eesleapeekeldeleeelekleeelkelnenleklkkeln 100
                  + rkf + ++++ +++ +l+  ++e+e++++    ++ a  ++++ +++++++ +++++ ++l  + +el ++le  +kel+
  KKY14088.1  34 DMRRKFSSVLKQVRQLKTTLQARQAELEHERQRLELRTIAetSRNKLRQQSRRMRQCKDDNRSLRLQNRELANHLEGARKELE 116
                 34455555555555555555554444444333222222212233333344444444444444444444444444444444444 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.1    0.0063       4.3      53     123 ..      20      91 ..      17      98 .. 0.80
   2 ?    4.7   2.2     0.044        31      78     132 ..      66     121 ..      57     122 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0063
        COG2  53 dyad.FvslSghLvglqeeleevesplaaarkkvesvreklsereeeveskleeakeleekrellklllkld 123
                 d+ d + s+ ++  +++++ + v +++ ++++ +++ +++l++ ++++e +  + ++ ++ r+  +++++++
  KKY14088.1  20 DIGDeYASVVDAALDMRRKFSSVLKQVRQLKTTLQARQAELEHERQRLELRTIAETSRNKLRQQSRRMRQCK 91 
                 566778888888899999999999999999999999999999999999987777777777776666666665 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.044
        COG2  78 laaarkkvesvreklsereeeveskleeakeleekr.ellklllkldevvekleal 132
                  +++r+  e  r+kl +++++++++ ++ ++l+ ++ el + l    + +ek+++l
  KKY14088.1  66 RLELRTIAETSRNKLRQQSRRMRQCKDDNRSLRLQNrELANHLEGARKELEKVDHL 121
                 456788889999*************9999999987658899999999999999986 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.9       0.2   1.4e+02      36      78 ..      32      63 ..      20      70 .. 0.40
   2 ?   10.7   6.3   0.00076      0.53       4      59 ..      62     117 ..      60     133 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.2
      CENP-H 36 nlrlkrknrelaaellelakekesekeklkeelekleaelkks 78
                +l+++rk  + ++++++l+   ++++ +l++           +
  KKY14088.1 32 ALDMRRKFSSVLKQVRQLKTTLQARQAELEH-----------E 63
                4444444444444443333222222211111...........1 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00076
      CENP-H   4 lieqrdelssellklsqelrelqeeltevekenlrlkrknrelaaellelakekes 59 
                 + +qr el + ++   ++lr+  +++ + + +n++l+ +nrela++l+  +ke e+
  KKY14088.1  62 HERQRLELRTIAETSRNKLRQQSRRMRQCKDDNRSLRLQNRELANHLEGARKELEK 117
                 558999*****************************************766655544 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   3.1     0.037        26       7      64 ..      29      85 ..      24      92 .. 0.57
   2 ?    6.3   2.8     0.021        15      18      59 ..      74     115 ..      67     125 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.037
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..XXXXXXXXXXXX CS
        YabA  7 fdkleeleeqleelleeleelkeelaelleenaeLeleneklrerl..eeeekkekekkk 64
                +d+  ++ ++++++l+++++lk++l++   + aeLe e ++l  r   e++++k +++++
  KKY14088.1 29 VDAALDMRRKFSSVLKQVRQLKTTLQA---RQAELEHERQRLELRTiaETSRNKLRQQSR 85
                556667788888888888888877654...556666666665444422333333333333 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.021
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXX CS
        YabA  18 eelleeleelkeelaelleenaeLeleneklrerleeeekke 59 
                 e+  ++l++  +++ ++ ++n++L+l+n++l ++le ++k+ 
  KKY14088.1  74 ETSRNKLRQQSRRMRQCKDDNRSLRLQNRELANHLEGARKEL 115
                 5566788888999999*******************5544443 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.3      0.32   2.2e+02     250     274 ..      38      62 ..      23      78 .. 0.61
   2 ?    2.4   8.3     0.042        29     246     300 ..      78     130 ..      40     142 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.32
    Prominin 250 eakeqLeqvnklekeLrksgsqLrd 274
                 + +  L+qv++l++ L+  +++L++
  KKY14088.1  38 KFSSVLKQVRQLKTTLQARQAELEH 62 
                 4445555666666666665555554 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.042
    Prominin 246 enlkeakeqLeqvnklekeLrksgsqLrdglrgvkrdlnqalsnlCqseeCskil 300
                 ++l++ ++ ++q+++   +Lr + ++L + l+g++++l+++ +  C+   C+ +l
  KKY14088.1  78 NKLRQQSRRMRQCKDDNRSLRLQNRELANHLEGARKELEKVDHLRCT--LCTVAL 130
                 46788889999999999999999999999999999999987666888..666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1954  (0.108985); expected 358.6 (0.02)
Passed bias filter:                      829  (0.0462379); expected 358.6 (0.02)
Passed Vit filter:                       135  (0.0075297); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 1209.66
//
Query:       KKY14099.1  [L=823]
Description: putative arsenite resistance protein ars2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-33  112.8   3.6    8.6e-33  112.8   3.6    2.1  2  DUF3546   Domain of unknown function (DUF3546)
    1.3e-11   44.1   0.1    3.6e-11   42.7   0.1    1.8  1  DUF4187   Domain of unknown function (DUF4187)
    1.8e-09   38.2   1.0    1.8e-09   38.2   1.0    2.5  2  ARS2      Arsenite-resistance protein 2


Domain annotation for each model (and alignments):
>> DUF3546  Domain of unknown function (DUF3546)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.8   3.6   1.4e-36   8.6e-33       5     109 ..      49     153 ..      45     154 .. 0.96
   2 ?   -2.6   0.4       1.1   6.4e+03      59      78 ..     576     597 ..     547     601 .. 0.58

  Alignments for each domain:
  == domain 1  score: 112.8 bits;  conditional E-value: 1.4e-36
     DUF3546   5 esqe.deiekeeaqkkYdeYkeefqkkqleeFfeaHkdeeWfrekYhPeelakrkeelrellkkrlevFlellesgvfdevsleadnskeevklldavv 102
                 e++e +++e++++q++Yd+Yk+++q +++++F+++Hk+eeWf+e+Y+Pe +++++++l e+++  +++++++lesgvfde++le +++k+e+++++++v
  KKY14099.1  49 EAREdRDKERTQIQAAYDQYKLDLQIRMARTFVQQHKSEEWFKERYVPEIRDQIRRRLVEFRQAPYAKWQSDLESGVFDEFTLE-GIYKNESDGAGGIV 146
                 566669******************************************************************************.************** PP

     DUF3546 103 ikeeggt 109
                 +keeg++
  KKY14099.1 147 EKEEGEA 153
                 *****97 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.1
     DUF3546  59 eel..rellkkrlevFlelles 78 
                 +++  r+ ++kr +++ + l++
  KKY14099.1 576 ADHfwRKHVEKRHDEWYQSLKD 597
                 3332255666666666666655 PP

>> DUF4187  Domain of unknown function (DUF4187)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.1     6e-15   3.6e-11       2      48 ..     403     449 ..     402     453 .. 0.94

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 6e-15
     DUF4187   2 eleefeeleaeerLeklleyLReeylYCfwCgtkYedeedLeenCPG 48 
                 +++++e l ++++L++++eyLR+ +++C++C ++ ++ ++L ++CPG
  KKY14099.1 403 DADDEELLVKKKKLDMTVEYLRRVFNFCLFCVFESDSVHELVRKCPG 449
                 678999999************************************** PP

>> ARS2  Arsenite-resistance protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   1.0   3.1e-13   1.8e-09      15     187 ..     514     696 ..     503     707 .. 0.65
   2 ?   -9.0   9.6         3   1.8e+04     157     189 ..     749     782 ..     702     787 .. 0.60

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 3.1e-13
        ARS2  15 newqkkfeekleellseketlseeeilklgkkdpekevEkfvqantqElakdKwlCplsG..KkFkgpEFvrKHilnKHaekveevrkeve...fFnny 108
                  +w k+fe+kl ++l++ et+   ++ k+g k  e+++E+ +++  +     K+ C +    K+Fk+  F rKH+ ++H+e  + ++ +v+   +   y
  KKY14099.1 514 FNWVKTFEDKLWQILEP-ETV---DLKKIGGKPMEEALEEELSKFIKQEDEAKFRCKVPEctKLFKADHFWRKHVEKRHDEWYQSLKDDVSifiYCTWY 608
                 58************987.677...9***************9999888888999999665445*****************************44433445 PP

        ARS2 109 lldakrPalpelkdktppr...danaaeaegrafpkq.apqgllgyaqprppllgyd...g.gpqypptqyGggrGnydnfrgq.ggg 187
                 +l +    + ++  +  p+   ++ +  +++  fp   +  + ++++  ++ + g+    g  p +   q G   G++  ++g  g+g
  KKY14099.1 609 ILTTTLQINLVNAYVLDPAhiaPSRTDATSNGHFPVAnSNIQSTPRGFNFQTMGGQFgfsGmMPGFGGMQNGNFSGMMPMQSGFsGMG 696
                 5555544443333333333222333344445556654133333444444444433322223356666666666666664444443334 PP

  == domain 2  score: -9.0 bits;  conditional E-value: 3
        ARS2 157 llgydg.gpqypptqyGggrGnydnfrgqggggy 189
                 +++++g g  y  +  Ggg G+ +   g g+ + 
  KKY14099.1 749 MRMPAGnGMGYLAQGGGGGGGKWGDGAGGGMTMG 782
                 2333333344555555677777766666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (823 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       915  (0.0510346); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.50
# Mc/sec: 4994.73
//
Query:       KKY14100.1  [L=201]
Description: putative translocator protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-46  157.4   8.3    2.3e-46  157.2   8.3    1.1  1  TspO_MBR  TspO/MBR family


Domain annotation for each model (and alignments):
>> TspO_MBR  TspO/MBR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.2   8.3   1.3e-50   2.3e-46       2     132 ..      20     168 ..      19     171 .. 0.95

  Alignments for each domain:
  == domain 1  score: 157.2 bits;  conditional E-value: 1.3e-50
                 HHHHHHHHHHHHHHHHH.CCH.HHHHHS---TTS--HHHHTTHHHHHHHHHHHHHHHHHHH................HHHHHHHHHHHHTSGGCTTTTT CS
    TspO_MBR   2 alalpllvgllgglftk.see.ewykslrkPpwaPpdwvfppvWtvlyilmgvaaylvwka................lalyavqlvlnllwsplffglk 82 
                 +++lp+++g+++g++t+ +e+ + y +l++Pp++Pp++vf+p+Wt+ly+lmg+aay++w+                  ++y+vql+lnl+w+plffg+k
  KKY14100.1  20 SILLPITLGAAVGYSTRpKETqATYLALKQPPLRPPPYVFGPAWTTLYGLMGYAAYRAWTVgmssfdpvtvestrrgATVYTVQLALNLIWMPLFFGAK 118
                 689***********9996555777**************************************************99966******************** PP

                 SGGGHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHCHHHHHHHHHHHHHHH CS
    TspO_MBR  83 spvlalvdivallglvvalilafskvdklaallllpyllWllfatylnas 132
                 +pv a vdi+al g+v++l++++skvdk+a+++l+pyl+Wl fatyl ++
  KKY14100.1 119 RPVEASVDIIALSGTVAYLAYTWSKVDKVATWCLAPYLGWLGFATYLCIG 168
                 ***********************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.50
# Mc/sec: 1213.03
//
Query:       KKY14101.1  [L=262]
Description: putative ccaat-binding transcription factor subunit hapb [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-29   99.8   4.6    1.8e-28   98.9   4.6    1.5  1  CBFB_NFYA  CCAAT-binding transcription factor (CBF-B/NF-YA) s
  ------ inclusion threshold ------
      0.036   13.2   0.0      0.048   12.8   0.0    1.2  1  Hus1       Hus1-like protein
      0.043   13.8   6.2       0.05   13.6   6.2    1.1  1  TFIIA      Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> CBFB_NFYA  CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   4.6   3.1e-32   1.8e-28       2      56 .]     131     186 ..     130     186 .. 0.99

  Alignments for each domain:
  == domain 1  score: 98.9 bits;  conditional E-value: 3.1e-32
   CBFB_NFYA   2 plyVNakQynrIlkRReaRakleaelkl.rkarkkylheSRhkhAmrRpRgpgGRF 56 
                 plyVNakQ++rIlkRR aR+kle++l+l +k rk+ylheSRh+hAmrRpRgpgGRF
  KKY14101.1 131 PLYVNAKQFHRILKRRVARQKLEEQLRLtSKGRKPYLHESRHNHAMRRPRGPGGRF 186
                 9******************************************************9 PP

>> Hus1  Hus1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.1e-06     0.048      75     109 ..     132     168 ..     122     225 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.1e-06
        Hus1  75 levdlaaLlraLksaeaak..svqlrLtkkgrvplLa 109
                 l v++++++r+Lk   a +  + qlrLt kgr p L+
  KKY14101.1 132 LYVNAKQFHRILKRRVARQklEEQLRLTSKGRKPYLH 168
                 779*********99888776899***********997 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   6.2   8.3e-06      0.05     198     351 ..      63     259 ..       8     262 .] 0.35

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.3e-06
       TFIIA 198 q........qqq.qqqqqqqqqqqqvqqqqqeesqqaqqa..sqeqvagsqvessqtdgae....daleeespv......legelsaeeeagaqkeels 275
                 +        qq+ + qq +    +qv q     +++ +++  sq+q+++  +++ q+++a+      ++eesp+      ++  l+++ ++++ +e   
  KKY14101.1  63 NmppgapmnQQRrMSQQLSSP-HNQVAQPVI--NSNVPRPgvSQNQMPP-PPAPMQQNQASpevvTGAAEESPLyvnakqFHRILKRRVARQKLEE--- 154
                 011112221222122222222.222222222..2222222224444444.2223333333322232222223333222211111111111111111... PP

       TFIIA 276 reeidrire......................................ealkakelekeskkkkraeessla............dlseilqlDGagddsd 324
                         +                                                                          ++++    DG++  ++
  KKY14101.1 155 --------QlrltskgrkpylhesrhnhamrrprgpggrfltaeevaM----------------------LekgstleeaiahSAKNKQNSDGPASGQK 223
                 ........1111222333444445555556666666665555444431......................03333333333332223333333333333 PP

       TFIIA 325 e...........eeeeeesdedsdsessddedeqveED 351
                 +              ++ + +d +++ +d+ed ++eED
  KKY14101.1 224 RkagaigdgntpV--KKPKTTDLTQSAEDSEDVDEEED 259
                 3333333322210..22233333333333344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       794  (0.0442858); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1732.62
//
Query:       KKY14102.1  [L=767]
Description: putative px domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-132  442.0   2.3   1.3e-132  442.0   2.3    1.6  2  DUF3818    Domain of unknown function in PX-proteins (DUF3818
    1.7e-40  138.0   0.4    3.2e-40  137.1   0.4    1.5  1  PXB        PX-associated
  ------ inclusion threshold ------
      0.021   14.4   1.0      0.067   12.8   1.0    1.8  1  RE_Bpu10I  Bpu10I restriction endonuclease
       0.12   12.6   3.4       0.35   11.1   3.4    1.8  1  GFD1       GFD1 mRNA transport factor


Domain annotation for each model (and alignments):
>> DUF3818  Domain of unknown function in PX-proteins (DUF3818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  442.0   2.3  2.8e-136  1.3e-132       1     338 [.     281     614 ..     281     615 .. 0.98
   2 ?   -4.0   0.2       1.3   5.6e+03     123     150 ..     637     667 ..     631     673 .. 0.47

  Alignments for each domain:
  == domain 1  score: 442.0 bits;  conditional E-value: 2.8e-136
     DUF3818   1 gLsklfeeikekesieelspelkkliewarielAstlyqvFvgsdnsselfaqlkrlhklmPYfllkqiLritNpmaimkglldLfLaqPfggrsLlqr 99 
                 gLsklf+ei++ke+i++ls+e++k++ew+rie+A+t+y++F+++dns+elfaq+kr+h+l+PY+l+k+++ri+Np+a+m+g+ldLfLaqPfg+rsLlqr
  KKY14102.1 281 GLSKLFQEIRTKEKIADLSTEYQKFAEWLRIEVAATIYHLFLAEDNSPELFAQAKRIHSLVPYTLMKNVIRIANPAAVMSGVLDLFLAQPFGSRSLLQR 379
                 89************************************************************************************************* PP

     DUF3818 100 ifstilnedlkelekeikelekkidkseelieklkkfveaseeeqeeireeseeekldllvvilrseel.pklskeqleeviesykaykeakkeeksas 197
                 ifs++ln+++++++k+i++l+ kid +++l+ klk+fv+a+e+ ++eir+e+++e++dl+v+ilrs+++ p+l++ q+ ++ ++y a+++a ++     
  KKY14102.1 380 IFSMTLNDGIRSFQKSIDALSGKID-DPVLVGKLKAFVNADEDIKNEIRAEAASESVDLVVTILRSDQFpPELTAPQIGKIYNAYVAWNSAIDN----V 473
                 *************************.**************************************************************988666....9 PP

     DUF3818 198 ekeenedaelfedlkellklylrerDkellikllqepelsellkdiitifyeplvrvykaanisdalkdfqkFlndliklveklkneeqesdpanvvqa 296
                 ++e +++a++f++lk++lkl++r+rDk ++ ++++ep+++ l++d++tifyepl+rvyk+an++++++df  F +d i++ve+ + ++  +dp+++vq+
  KKY14102.1 474 DDELKQGAQFFASLKQMLKLLTRQRDKAMMLNMIEEPTTLYLFRDLFTIFYEPLIRVYKSANVYNSITDFSVFADDAIRTVEQAQRQDIAADPNQTVQS 572
                 99********************************************************************************88888766********* PP

     DUF3818 297 fidLvdrhedsfykFvhevyvkdeelfdelikWiekilkflr 338
                 fidL++rhed+fykFvhev+ +d++lf +l+ Wie+il+flr
  KKY14102.1 573 FIDLCARHEDNFYKFVHEVHIHDNGLFGSLMSWIEDILQFLR 614
                 ****************************************98 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 1.3
     DUF3818 123 idkseelieklkkfveasee....eqeeiree 150
                 id +++ i+++++ v+ +e     +q+++r++
  KKY14102.1 637 ID-KDKAISEINALVKWQEArkkwHQDKTRQK 667
                 44.55555555555555544233333333333 PP

>> PXB  PX-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1   0.4     7e-44   3.2e-40       3     129 ..      27     150 ..      25     151 .. 0.93

  Alignments for each domain:
  == domain 1  score: 137.1 bits;  conditional E-value: 7e-44
         PXB   3 seLtplqehyLkkiLihlelykElealkdpdalsklGyPFkseekekkekkeaesselPllrfllrefvltfPfl.kalpkefWqdkvqpfleslaean 100
                 + Lt +qehyLk++Li+ ++++E+ +l++p+al+++G+PFks+  e     +  +selP+lr+++ ++v +fPfl ka +kefWqdk+q fles+a++n
  KKY14102.1  27 QILTGKQEHYLKRELISRQVHSEIAELNSPTALQRFGAPFKSDYGE----VAPVDSELPILRYIFVNHVRNFPFLdKAREKEFWQDKLQAFLESFAKKN 121
                 689**************************************96533....335677*******************99999******************* PP

         PXB 101 lSesydkgeltkrkklatklskllellvr 129
                 +S+s+d+ e tkr+kla+k++kl+el++ 
  KKY14102.1 122 ISSSEDRLEETKRRKLAQKCEKLVELMMV 150
                 **************************986 PP

>> RE_Bpu10I  Bpu10I restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.0   1.5e-05     0.067     116     202 ..     203     291 ..     197     303 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.5e-05
   RE_Bpu10I 116 edlklavPg.akYfllcEwLdltpvslaktdiDevlilRk...akrlssniRkeyatvegrqkkreeyveyldknpfapdvfqrllekiee 202
                 + +k ++P+ a+   ++++L l p++l++ ++ ++   Rk   +kr++ + R+ y+  ++r ++ + y+e + ++ ++++ + +l+++i++
  KKY14102.1 203 TSVKRTNPQiAQSKAMADFLTLQPIQLNEEEMIDIER-RKemdEKRIE-EQRQFYEIARKRAQELDVYMEKFRRDIVESNGLSKLFQEIRT 291
                 5688899975788899***********9998877654.3322246666.5599************************************86 PP

>> GFD1  GFD1 mRNA transport factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.4   7.8e-05      0.35       6      17 ..     245     256 ..     245     258 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.8e-05
        GFD1   6 KKKIEEQrkIle 17 
                 +K+IEEQr+++e
  KKY14102.1 245 EKRIEEQRQFYE 256
                 6*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1112  (0.0620224); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 5315.05
//
Query:       KKY14103.1  [L=324]
Description: putative dna repair family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-26   92.5   0.0    5.9e-26   91.9   0.0    1.5  1  2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.0   3.3e-30   5.9e-26      62     196 .]     153     285 ..      73     285 .. 0.78

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 3.3e-30
  2OG-FeII_Oxy_2  62 kesvdakplspfpeallrlverlvkaagpegwspnaalvnfYrdga.riglHqDkees.aleapivSlSLGasatfrfgkesree.........e 145
                     k++ d +   p+pe  l++++r+++aa  ++ ++n +lvn+Y +ga +i++H+D+e   ++e+ i+S+SLGa+++f+++++              
      KKY14103.1 153 KYRCDPR---PIPE-CLDILRRVTEAA--TKTKYNFVLVNYYANGAdSISYHSDDERFlGPEPAIASFSLGAKRDFLMKHKPIPPkngvtvpelD 241
                     3333444...5555.445555555433..5689***********************4459******************9654222456677778* PP

  2OG-FeII_Oxy_2 146 iiailLesGdllvmggesrkay.HgvprikkdtapeleleelrtrRinlTfR 196
                     +i+++L+sGd+++m g+++  + H++p+ k          e +++R+n+T+R
      KKY14103.1 242 PIKLPLQSGDMVLMRGRTQSNWlHSIPKRKGV--------EADKGRLNITLR 285
                     **************************999985........3788*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2281.08
//
Query:       KKY14104.1  [L=436]
Description: putative trna methyltransferase trm5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-65  220.1   0.0    3.1e-65  219.6   0.0    1.2  1  Met_10    Met-10+ like-protein
  ------ inclusion threshold ------
       0.15   11.2   0.0       0.24   10.5   0.0    1.2  1  TRM       N2,N2-dimethylguanosine tRNA methyltransferase


Domain annotation for each model (and alignments):
>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.6   0.0   3.5e-69   3.1e-65       2     189 ..     122     352 ..     121     372 .. 0.95

  Alignments for each domain:
  == domain 1  score: 219.6 bits;  conditional E-value: 3.5e-69
                 EEEEETTEEEEEB-TTSSHHHHHHHHHHHHHS.S-SCEEEE-S-S..BTTTTB--EEEEEES-.SEEEEEETTEEEEEETTTS---GGGHHHHHHHHTT CS
      Met_10   2 kfeiiGdvvilnlreelkeykkvigevildkt.kvktvlrkvsev..egefRtfelevlaGsdstetihkEngcrfklDvskvyfsskleaErerlakl 97 
                 +f+++G+v+++n+re++ +y+++ig+++ldk+ ++ktv++k + v  e+ fRtf++evlaG+d++++++  n c+f++ + kvy++++l++E++r++ +
  KKY14104.1 122 GFAQVGHVAHVNIREQYLPYRHLIGQILLDKNtNLKTVINKLEDVgtESIFRTFPYEVLAGPDDLNVVVSHNDCTFRFNFGKVYWNTRLNTEHTRIMDK 220
                 699******************************************88899************************************************* PP

                 --TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EE.......................... CS
      Met_10  98 veegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqlad.......................... 170
                 ++eg+ V+dv+AG+Gpfa+p +k  + ++v+a+dlnP+s++ ++++++lN+v+k v+p++ Dgre+ir+++ d                          
  KKY14104.1 221 FKEGDAVCDVMAGVGPFAVPSGK--RRVFVWANDLNPDSYRAMQDAVTLNRVDKFVQPFCLDGREFIRKSAKDllrlqrtatitaktpsrsevkkpnpk 317
                 ***********************..*********************************************999************************** PP

                 .............EEEE--TTTGGGGHHH...HHH CS
      Met_10 171 .............rvvmnlpksaieFldk...vla 189
                              ++vmnlp+sa+eFld+   +++
  KKY14104.1 318 aqtkvlqepatfdHYVMNLPASAVEFLDAfkgLYT 352
                 ***************************98444444 PP

>> TRM  N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   2.6e-05      0.24      76     116 ..     247     287 ..     211     292 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 2.6e-05
                 EEEEE-S-HHHHHHHHHHHHHTT--GGEEEE-S-HHHHHC- CS
         TRM  76 evlaNDisekAvelikeNvklneveeivvineddAnvllae 116
                  v+aND+++  +  ++  v+ln v++ v++   d + ++++
  KKY14104.1 247 FVWANDLNPDSYRAMQDAVTLNRVDKFVQPFCLDGREFIRK 287
                 699***********************999988888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 2679.04
//
Query:       KKY14105.1  [L=144]
Description: putative polymerase ii polypeptide d [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-22   77.9   0.5      1e-21   77.5   0.5    1.2  1  RNA_pol_Rpb4    RNA polymerase Rpb4
  ------ inclusion threshold ------
      0.099   13.2   1.6        2.8    8.5   0.2    2.1  2  EF-G-binding_N  Elongation factor G-binding protein, N-termin


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb4  RNA polymerase Rpb4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.5   1.1e-25     1e-21       2     122 ..      31     140 ..      30     141 .. 0.93

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 1.1e-25
                   E-HHHHHHHHHHHHHHHHCHHHHHTCCCCCHHSHCHTCHHCHHHHHHHHHHHCTHHTTSSHHHHHHHHHHHTTST..STHHHHHHHHHCSTSSHHHH CS
  RNA_pol_Rpb4   2 LsnsEvllvlkeeleerknkdkkeseddkisekeevkgnlnkilkktleyltnkfsrlkneekfnelvellksfe..LtkaEklqlvnlkPesavel 96 
                   L++sE++l+l++ +e+r++               +   + ++ l kt +yl+  f+r+k++e++++  + l s+   L+ +E+ ql++l+P++a+e+
    KKY14105.1  31 LTLSEARLILNAVVEKRREL------------APNGRIQETETLTKTQDYLDM-FARFKDKENVEAAERILTSYAgqLDFFERSQLGSLLPDEAEEA 114
                   9**********777777555............35677899999**********.*******************9999******************** PP

                   HHHSTTGTTTSTSHHHHHHHHHHHHH CS
  RNA_pol_Rpb4  97 ktlieeleerfedeqleeiLdelkev 122
                   k+li++l+++++d +l+++Ldel+++
    KKY14105.1 115 KALIPSLQSKISDGDLQQLLDELQKL 140
                   ************************97 PP

>> EF-G-binding_N  Elongation factor G-binding protein, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1    0.0074        67      40      75 ..      55      88 ..      37      96 .. 0.64
   2 ?    8.5   0.2   0.00032       2.8      43      78 ..     105     140 ..      97     142 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0074
  EF-G-binding_N 40 kIlelfpelseeqkelLeqiddiktkekaeklLeeL 75
                    +I+e   e  ++++++L+ ++  k+ke++e + + L
      KKY14105.1 55 RIQET--ETLTKTQDYLDMFARFKDKENVEAAERIL 88
                    56664..45567777777777777777666554444 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00032
  EF-G-binding_N  43 elfpelseeqkelLeqiddiktkekaeklLeeLkey 78 
                      l+p++ ee+k+l+ ++++  +  + ++lL eL+++
      KKY14105.1 105 SLLPDEAEEAKALIPSLQSKISDGDLQQLLDELQKL 140
                     689***********9999999************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.31s 00:00:00.81 Elapsed: 00:00:00.50
# Mc/sec: 864.61
//
Query:       KKY14106.1  [L=522]
Description: putative mitochondrial chaperone [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-35  121.8   0.0    3.5e-35  121.3   0.0    1.2  1  DnaJ_C         DnaJ C terminal domain
    3.1e-22   78.5   1.2    5.4e-22   77.7   1.2    1.4  1  DnaJ           DnaJ domain
    2.4e-09   37.4  20.8    4.4e-09   36.6  20.8    1.5  1  DnaJ_CXXCXGXG  DnaJ central domain
  ------ inclusion threshold ------
       0.98    9.5   7.1        5.5    7.0   7.2    2.0  1  HypA           Hydrogenase/urease nickel incorporation, metal
          8    6.5  20.1       0.49   10.4   4.9    2.5  2  Anti-TRAP      Tryptophan RNA-binding attenuator protein inhi


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.3   0.0   9.7e-39   3.5e-35       1     148 []     199     425 ..     199     425 .. 0.96

  Alignments for each domain:
  == domain 1  score: 121.3 bits;  conditional E-value: 9.7e-39
                 EEEEEEE-HHHHHH-.EEE.EEEE........................................................................TEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................................xxxxxxx RF
      DnaJ_C   1 ieveleisleelykGktkkikikrnvi.................................................................kkekktl 34 
                 iev+ +is+ +++kG+tk+i i+  v+                                                                 ++++kt+
  KKY14106.1 199 IEVQTNISFMDAAKGVTKDIVITPLVKcgtcrgdglkkgtkrteckacggtgtrvhimqqgfqmastcdacggagvtiprgsecgtcsgngvVRQRKTV 297
                 799********************9999****************************************************************988888** PP

                 EEEE-TT--TT-EEEETT-SS.......SS.....S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHHHTEEEEEE-SS-EEEEEE...--TT-EE CS
                 xxxxxxxxxxxxxxxxxxxxx.......xxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxx RF
      DnaJ_C  35 evkipaGikdgqkirlegeGd.......eeg...gepGDlivtikvkphpvFkrkgndlyveveislaeallGgklevptldgkvklki...tqpgevl 120
                 ev+ip Gi+dg+++++ geGd       +++    ++GDl+v i+v+p+++F+r+g d++++++i+l++allGg+++vptldg+v++++   t +g+++
  KKY14106.1 298 EVDIPGGIEDGMRLKVMGEGDaaatglsPNPnsrSQSGDLYVLIRVAPDSRFSRNGADVLYTASIPLTTALLGGEVTVPTLDGEVRVRVatgTGTGDKI 396
                 **********************999888333568**************************9**************************99999******* PP

                 EETT-S-EET....TEE--EEEEEEEE-- CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
      DnaJ_C 121 rikgkGmpklk.kpgkrGdlyvevkvefP 148
                 ++ g Gm++l  ++g+ Gdl v ++v++P
  KKY14106.1 397 TLGGLGMKRLGgRRGGSGDLKVDFRVAMP 425
                 **********9999*************99 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   1.2   1.5e-25   5.4e-22       1      63 []      60     121 ..      60     121 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 1.5e-25
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63 
                 d+Y+ Lgv+k as++eIkkaY+ la+kyHPD n kdp+a+ekF   ++Aye L+dp+k++++D
  KKY14106.1  60 DPYKTLGVNKGASASEIKKAYYGLAKKYHPDTN-KDPSAKEKFTDAQAAYELLQDPQKKEAWD 121
                 78*******************************.**************************998 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6  20.8   1.2e-12   4.4e-09       1      67 []     226     289 ..     226     289 .. 0.82

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1.2e-12
  DnaJ_CXXCXGXG   1 CkkCkGsgakkgk.kktCktCkGsG.vvreeqktlgp.fvqqsqstCpeCeGtGkvikekdkCkkCkGkg 67 
                    C +C+G+g kkg+ +++Ck+C+G+G +v+  q    + f  q+ stC++C+G G +i + ++C +C+G+g
     KKY14106.1 226 CGTCRGDGLKKGTkRTECKACGGTGtRVHIMQ----QgF--QMASTCDACGGAGVTIPRGSECGTCSGNG 289
                    9********99765888********3333333....313..4679***********************86 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.2    0.0015       5.5      69     105 ..     239     282 ..     209     286 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0015
                 -EEEETTTS-EEECHH..HHH......S-TTTSSS-EEEEESSSE CS
        HypA  69 vkvrCreCgkefelee..kal......rCpkCgsadveivsGeel 105
                  +++C+ Cg +++  +  +        +C +Cg+a+v+i +G+e+
  KKY14106.1 239 KRTECKACGGTGTRVHimQ-QgfqmasTCDACGGAGVTIPRGSEC 282
                 57899***98887554331.1345566***************997 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   7.1      0.08   2.9e+02      11      41 ..     224     251 ..     222     262 .. 0.86
   2 ?   10.4   4.9   0.00014      0.49      11      42 ..     264     291 ..     260     296 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.08
                 EE-TTTTTTSEETTE......E-TTTTTSSE CS
   Anti-TRAP  11 tkCdaCngsGkiepeeprasleCPkCsGkgl 41 
                 +kC +C g G  +++      eC +C+G g 
  KKY14106.1 224 VKCGTCRGDGLKKGT---KRTECKACGGTGT 251
                 58************9...5569*****9884 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00014
                 EE-TTTTTTSEETTE......E-TTTTTSSEE CS
   Anti-TRAP  11 tkCdaCngsGkiepeeprasleCPkCsGkgli 42 
                  +CdaC g+G   p     + eC  CsG+g++
  KKY14106.1 264 STCDACGGAGVTIPR----GSECGTCSGNGVV 291
                 68**********999....88*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3878.02
//
Query:       KKY14107.1  [L=1506]
Description: putative vacuolar protein-sorting protein bro1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.1e-131  437.1   1.1   5.1e-131  437.1   1.1    1.7  2  BRO1            BRO1-like domain
    1.3e-79  267.6  11.6    2.3e-79  266.8  11.6    1.4  1  ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV
    2.9e-08   33.3   0.0    2.9e-07   30.0   0.0    2.2  1  Rad51           Rad51
    7.1e-05   22.3   0.0    0.00021   20.7   0.0    1.8  1  ATPase          KaiC
    0.00039   20.0   0.0    0.00083   18.9   0.0    1.4  1  RecA            recA bacterial DNA recombination protein
    0.00058   19.8   0.0     0.0019   18.1   0.0    1.8  1  ATPase_2        ATPase domain predominantly from Archaea
     0.0036   16.9   0.0      0.015   14.9   0.0    2.0  1  AAA_25          AAA domain
     0.0061   17.0   0.0      0.024   15.1   0.0    2.0  1  AAA             ATPase family associated with various cellula
  ------ inclusion threshold ------
      0.012   16.0   0.0      0.075   13.4   0.0    2.4  1  AAA_16          AAA ATPase domain
      0.015   14.7   0.7          1    8.8   0.1    2.8  2  DUF416          Protein of unknown function (DUF416)
      0.031   14.0   0.0      0.095   12.4   0.0    1.8  1  IstB_IS21       IstB-like ATP binding protein
      0.048   14.2   0.6       0.39   11.2   0.0    2.7  2  ABC_tran        ABC transporter
      0.056   13.7   0.0       0.38   11.0   0.0    2.3  2  AAA_22          AAA domain
       0.08   12.3   0.0       0.18   11.1   0.0    1.5  1  DnaB_C          DnaB-like helicase C terminal domain
      0.094   12.2   0.0       0.24   10.8   0.0    1.6  1  PhoH            PhoH-like protein
        0.1   12.5   0.0       0.34   10.8   0.0    1.9  2  NACHT           NACHT domain
        0.1   12.2   0.2        7.5    6.1   0.0    3.0  3  cobW            CobW/HypB/UreG, nucleotide-binding domain
       0.12   12.0   0.0       0.43   10.3   0.0    2.0  1  AAA_24          AAA domain
       0.16   12.4   0.0       0.68   10.3   0.0    2.1  1  RNA_helicase    RNA helicase
        2.1    8.7   9.4        1.1    9.7   0.1    4.1  4  DUF2383         Domain of unknown function (DUF2383)
        9.3    5.9   9.1       0.99    9.1   0.0    3.1  3  AAA_11          AAA domain


Domain annotation for each model (and alignments):
>> BRO1  BRO1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  437.1   1.1    6e-134  5.1e-131       1     389 []       6     393 ..       6     393 .. 0.97
   2 ?   -2.8   0.1       2.5   2.1e+03     198     223 ..     689     714 ..     641     743 .. 0.65

  Alignments for each domain:
  == domain 1  score: 437.1 bits;  conditional E-value: 6e-134
                 XXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX CS
        BRO1   1 llsiplKkteekevdlkkpLknyIsetygsqdpeafeddlaelnklRqdavrksankdsesglelllkYyaqLellelrfpieeqslkveFtWydafss 99 
                 ++s plK+t+e  +d++ pLk yI++tyg +dpe++++++a+ln+lRqd +r+ a+kds++g++ll++Yy+qLell+lrfp++e+++k++FtW+daf+ 
  KKY14107.1   6 MISSPLKQTNE--IDWTAPLKGYIRTTYG-DDPERYSEECATLNRLRQD-MRG-AGKDSAAGRDLLYRYYGQLELLDLRFPVDENHIKISFTWFDAFT- 98 
                 899******66..***************8.99*****************.556.89999***********************98899**********5. PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        BRO1 100 skkvtqsslafEkasvLFniaalysqlaasqnrstdeglkrackyfqqAAgvfqylkenflhapteeesedlspetlkaLeklmlAqAqecflekaikd 198
                 +k ++q+slafEkas++Fni a++s+ aa+q+rs+++glk+a+++fq++Ag+f+y++enflhap    s+dls++t+k+L ++ lAq qe+flek + d
  KKY14107.1  99 HKATSQHSLAFEKASIIFNISAVLSCHAAAQDRSEENGLKTAYHSFQASAGMFTYINENFLHAP----STDLSRDTVKTLISITLAQGQEVFLEKQVAD 193
                 999*************************************************************....****************************99* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....... CS
        BRO1 199 nkkdsliaKlaaqvaelYeealealkkselidekeevlkklldksWikhvqvKashfkAlaqyrqalaaeeakkyGeeiarlqkAlellkea....... 290
                 +kk++l+aKlaaq++ lY++a+e +        +e+v k+++d++W ++ +vKa+h ++l++y+qal++e+a  +G +iarlq A++ +k+a       
  KKY14107.1 194 GKKPGLLAKLAAQAHFLYTQAMEGV--------QENVAKAVFDRTWQTLTTVKAAHTASLSEYYQALVDEDAGSHGSAIARLQLAEKSAKSAyglsksf 284
                 *************************........77888889********************************************************** PP

                 .........X...........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXHHHHHHH CS
        BRO1 291 .........lkskkaeelledlkglkdvveeklkeaekDNdlIYheevPsesslpeikkaslvkaipleeeke.eekseesgkdlFakLvPlsvheaas 379
                          l s+ + +l+  +k++ ++v+ekl ++ kDNd+IYh+++P+e+sl++++k+ ++k+ip++e ++ +++++++g+d+F+k+vPl+v+e+as
  KKY14107.1 285 pptppsasnLGSETSAALQTITKKQLENVQEKLVTLVKDNDFIYHQPIPAEASLSAVSKLPAAKPIPVSELYQgQDIQRIIGPDIFQKIVPLAVTESAS 383
                 *****9999777777778**************************************************998888************************* PP

                 HHHHHHHHHH CS
        BRO1 380 ayserkaklv 389
                 +y+e+kaklv
  KKY14107.1 384 LYDEEKAKLV 393
                 ********97 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.5
                 XXXXXXXXXXXXXXXXXXXXXXXXXX CS
        BRO1 198 dnkkdsliaKlaaqvaelYeealeal 223
                 d++k   i K   qv   Y++a++a+
  KKY14107.1 689 DQQKYERITKSRGQVMAKYKKAVNAF 714
                 44444455555555555555555554 PP

>> ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.8  11.6   2.7e-82   2.3e-79       2     295 .]     433     752 ..     432     752 .. 0.90

  Alignments for each domain:
  == domain 1  score: 266.8 bits;  conditional E-value: 2.7e-82
  ALIX_LYPXL_bnd   2 lPpsllekaeevrsqgglqrlekllqdlqelkerneeiLdeieklLdeEesedeklrakygtrWtrqpSseltaelraelqkyreileeAsesDk 96 
                     + +++++++e+++   +++ ++k++++l + k+++ +iLd+++k+Ld+Ees++ek+r+kyg +Wt+qpSs+lt++lr++++ yr+++++As+sD+
      KKY14107.1 433 VEEDFRRWCEDIS---NHEPFQKAFDQLARDKSTVLDILDKCSKQLDMEESVCEKMRSKYGGEWTQQPSSRLTTTLRDDVRTYRSTIDQASNSDA 524
                     6789*********...9****************************************************************************** PP

  ALIX_LYPXL_bnd  97 ivrqklqenkedlelL.sgpeeeleaalp........ssssa................aa....sesveeqirklrsllekldelkaereqllkd 162
                     +++++ ++++ d+e+L s+ e+   ++l                              ++    ++sv eqi+k+++ll+kl+ +k+er q+lkd
      KKY14107.1 525 QLHATARQYETDFEELrSAGERGEADLLFqqamikagA---GrgnergspsgegslldEDysegGPSVPEQIAKVEDLLKKLNLIKRERSQVLKD 616
                     ****************6664444444433333334440...155555667777777661155669****************************** PP

  ALIX_LYPXL_bnd 163 lkekaendDitpklltekkrdiaanefealfeeelekydplqeqleqslakqeellkeiqeaneefeqskksdseq..s...qrqreevlqklea 252
                     lkek++ndDi+++l+++kk+   +n +++lf++elek++p+q++l ++++kq++llk++++++ +++q+k+++s+q  +   +++r +v+ k+++
      KKY14107.1 617 LKEKVHNDDISNVLILNKKA--LVNGESELFQAELEKFRPHQNRLLSTVHKQSSLLKDLTKTYGALLQDKRVRSDQqkYeriTKSRGQVMAKYKK 709
                     ********************..556779**********************************************998647889************ PP

  ALIX_LYPXL_bnd 253 aydkykelksnleeglkFYndltelleklqkkvkdfvfaRrtE 295
                     a++++++l+++l  ++ FY +l++ +e+l+++v++fv++Rr E
      KKY14107.1 710 AVNAFEDLIQGLLRAQSFYGELKDSVESLEQNVDSFVNNRRGE 752
                     ****************************************976 PP

>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   3.4e-10   2.9e-07      31     220 ..     947    1165 ..     911    1175 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 3.4e-10
                  TSSEESSSEEEEEESTTSSHHHHHHHHHHHTTS-TTTS--SSEEEEEESSS---GGGGHHHH..................HHT.T--.HHHHGGGEE CS
       Rad51   31 gGGietgsiteifGefrsGktqlchtlcvtvqlplelgGgegkavyidtegtfrperlveia..................ery.kld.keevlenva 107 
                  +GG+  g+ tei+G  +sGkt l+++++  + l      +++++++idt g + p+rl +                        +l   +++l +  
  KKY14107.1  947 NGGVSRGQATEIYGPPGSGKTALAMQIASNA-LHA---DSKSHVCWIDTAGPIPPQRLEQFLrntpstnlgtsspggrppSSLpDLSlLDSMLTRFH 1039
                  6**************************9765.443...45789*****************9889999999999999877633334442356888899 PP

                  EEE--STTHHHHHHHHTHHHHHHS-EEEEEEETTTGGGCH-...............------THHHHHHH.HHHHHHHHHHHHHH--EEEEEEE--- CS
       Rad51  108 yaRaytiehqeellqqaaallaedkfallivDsvtalyRtd...............fsgrgelakRqqkl.gkllrtLrkladefevavvitnqvva 188 
                     ++t  h   l  + + ++     +l+++D + +l+ +                 s     ++R   + g l ++L+kla   ++av++ nq   
  KKY14107.1 1040 QRQVFTLPHLLTLFLHPTPEFPPPSTSLVVIDNISSLFNVSfphtsrssstppgtkASAISFASTRRFAIaGDLSNALAKLAALRNLAVIVINQTGT 1136
                  999**************************************999999999999887555555566666651567789*****************999 PP

                  ----.------------HHHHHHHH-SEEEEE CS
       Rad51  189 qvdgqaalfsadpkkPigGlvlahasttRlal 220 
                  ++ g   l  a  k  +gG+ +   ++tR ++
  KKY14107.1 1137 SITG---LNRAILKPAVGGKEWDVGIATRCVI 1165
                  8888...4444455557777777777777665 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.5e-07   0.00021       2      44 ..     928     978 ..     927     987 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.5e-07
      ATPase   2 ktgIeglDeilk........gGipegrvvlitGepGtGKtifalqFlikga 44 
                  t  + lD++l+        gG+ +g+++ i+G pG+GKt +a+q + + +
  KKY14107.1 928 TTNLPSLDDLLQpldplkenGGVSRGQATEIYGPPGSGKTALAMQIASNAL 978
                 57788999999889999999*************************887765 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   9.8e-07   0.00083      47      89 ..     947     991 ..     938    1003 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 9.8e-07
                 SSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-..-EEEEES CS
        RecA  47 iGGlpkGriieiyGpessGkttlalhaiaeaqkkgg..vaafida 89 
                  GG+ +G+ +eiyGp  sGkt+la+++ ++a +++    +++id+
  KKY14107.1 947 NGGVSRGQATEIYGPPGSGKTALAMQIASNALHADSksHVCWIDT 991
                 69************************9998866543114556665 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.3e-06    0.0019      25      71 ..     958    1006 ..     950    1016 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.3e-06
    ATPase_2   25 iYGpegsGKtaLlkeiienledkdk..yviyyialreesiskldefiee 71  
                  iYGp gsGKtaL ++i++n ++ d   +v +++    +  ++l++f+++
  KKY14107.1  958 IYGPPGSGKTALAMQIASNALHADSksHVCWIDTAGPIPPQRLEQFLRN 1006
                  9******************955444349999998888888888888764 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.8e-05     0.015      28     111 ..     948    1033 ..     928    1134 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.8e-05
      AAA_25   28 gllpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal............rddarllvldlagv 111 
                  g + +g  + ++G+pg+GKt+la+++a   +  +         +  V ++++ ++    ++Rl++ +++             r+++ l+ l+l ++
  KKY14107.1  948 GGVSRGQATEIYGPPGSGKTALAMQIASNALHAD--------SKSHVCWIDTAGPI--PPQRLEQFLRNTpstnlgtsspggRPPSSLPDLSLLDS 1033
                  55589999*******************9988655........34567777777775..56666666666666666666666655666666665554 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.8e-05     0.024       3      22 ..     958     977 ..     957    1004 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.8e-05
                 EESSTTSSHHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakel 22 
                 +yGppG GKT+la ++a+++
  KKY14107.1 958 IYGPPGSGKTALAMQIASNA 977
                 69***************986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   8.8e-05     0.075      24      50 ..     949     979 ..     932    1014 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.8e-05
      AAA_16  24 p....elvllsGesGvGKsslvrellralek 50 
                 +    +++ ++G++G+GK++l+ +++  +  
  KKY14107.1 949 GvsrgQATEIYGPPGSGKTALAMQIASNALH 979
                 4444478889************999975544 PP

>> DUF416  Protein of unknown function (DUF416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.067        57      31      61 ..     210     241 ..     205     257 .. 0.81
   2 ?    8.8   0.1    0.0012         1     135     185 ..     579     629 ..     572     631 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.067
                 HHHHHTT-S-HHHHHHHHHHHHHHT.TS---G CS
      DUF416  31 lFceatefgdakvlrnildlvWell.tvkkak 61 
                 l+++a+e  +++v + ++d  W++l tvk a 
  KKY14107.1 210 LYTQAMEGVQENVAKAVFDRTWQTLtTVKAAH 241
                 7999999999***************4444443 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0012
                 -HHHHHH-HHHHHHHHHHHHHHHHHHH--SSHHHHHHHHHHHHHGGG--TT CS
      DUF416 135 seeelkehplieeeldvqeellrlleeveardkelikelrqelreegvSNi 185
                 +e++ +  p + e+++  e+ll++l+ +++ +++ +k+l++++ ++ +SN+
  KKY14107.1 579 DEDYSEGGPSVPEQIAKVEDLLKKLNLIKRERSQVLKDLKEKVHNDDISNV 629
                 44444458999999************************************7 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00011     0.095      44      77 ..     950     983 ..     939     993 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
   IstB_IS21  44 iekkenivllGpsGvGKshlaialgveavragls 77 
                 +++ ++  + Gp+G GK+ la+ ++ +a +a+ +
  KKY14107.1 950 VSRGQATEIYGPPGSGKTALAMQIASNALHADSK 983
                 667788889*******************997754 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       2.1   1.8e+03      24      95 ..     461     536 ..     461     644 .. 0.50
   2 ?   11.2   0.0   0.00046      0.39       7      34 ..     949     976 ..     945     993 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2.1
                 HHHHHHHHTTSS--.SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH.HHHTCHHHHHHHSTTG CS
                 xxxxxxxxxxxxxx.xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
    ABC_tran  24 KStLlkllagllkp.teGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren.esdeeiekalsklglk 95 
                 KSt+l +l + +k+ +++e  +++  +k+  + +++ ++++ +   ++   +++t+ +  +sd+++++ +++++ +
  KKY14107.1 461 KSTVLDILDKCSKQlDMEESVCEKMRSKYggEWTQQPSSRLTTTLRDDVRTYRSTIDQAsNSDAQLHATARQYETD 536
                 6666666666555543333335555555555444444444444444444444444444443333333333332222 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00046
                 EEETTSEEEEEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   7 klkegekvaivGenGaGKStLlkllagl 34 
                  +++g+ + i G+ G+GK+ L++ +a +
  KKY14107.1 949 GVSRGQATEIYGPPGSGKTALAMQIASN 976
                 689******************9999875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       3.3   2.8e+03      54     104 ..     479     523 ..     447     549 .. 0.68
   2 ?   11.0   0.0   0.00044      0.38       6      51 ..     954     995 ..     950    1086 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.3
      AAA_22  54 kdllrellralglelkaerlsseellealeqalraravielliiDEaqhlr 104
                 +++++++ +++g e     + s++l ++l++ +r+++      iD a + +
  KKY14107.1 479 ESVCEKMRSKYGGEWTQ--QPSSRLTTTLRDDVRTYRS----TIDQASNSD 523
                 45566666666666555..9999999999999999998....777766654 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00044
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst 51 
                 + + ++G++G+GKT l+ ++++++     +++ +++v  ++ +++ 
  KKY14107.1 954 QATEIYGPPGSGKTALAMQIASNA----LHADSKSHVCWIDTAGPI 995
                 66789************9999987....344555555555555554 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00021      0.18      13      49 ..     947     983 ..     935     992 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00021
                 CTSBXTTXEEEEEEXTTSSHHHHHHHHHHHHHHCSTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  13 tsGlqkgdliiiAarpsmGktalalniaenaavkekl 49 
                  +G+ +g+ + i + p+ Gktala++ia+na + +++
  KKY14107.1 947 NGGVSRGQATEIYGPPGSGKTALAMQIASNALHADSK 983
                 5789999999999*****************8854433 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00028      0.24      22      49 ..     956     983 ..     949     990 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00028
                 EEEE--TTSSTTHHHHHHHHHHHHTTS- CS
        PhoH  22 vfaiGpaGtGKtylavalavealkkkkv 49 
                 + + Gp G+GKt la+++a +al++++ 
  KKY14107.1 956 TEIYGPPGSGKTALAMQIASNALHADSK 983
                 6689*****************9988665 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       7.1     6e+03      62      99 ..     440     477 ..     437     506 .. 0.61
   2 ?   10.8   0.0    0.0004      0.34       5      26 ..     958     979 ..     955     989 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 7.1
                 CTS--SSS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH CS
       NACHT  62 lpepaapvsevwavllelperlLlilDglDelvtdlgq 99 
                 ++e +++++++ +   +l++    +lD lD+++++l+ 
  KKY14107.1 440 WCEDISNHEPFQKAFDQLARDKSTVLDILDKCSKQLDM 477
                 66666666662222223333333678999999998887 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0004
                 EEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   5 lqGeaGsGKTtLlqklalawae 26 
                 + G++GsGKT+L+ ++a+ + +
  KKY14107.1 958 IYGPPGSGKTALAMQIASNALH 979
                 78***************98755 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.96   8.2e+02     141     173 ..     626     656 ..     601     659 .. 0.77
   2 ?    6.1   0.0    0.0087       7.5       2      23 ..     955     976 ..     954     987 .. 0.80
   3 ?    1.7   0.0      0.19   1.7e+02      65      93 ..    1109    1136 ..    1107    1153 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.96
                 TSSEEEEE-HHHHCHC..HHHHHHHHHHHHTTS CS
        cobW 141 aadllvlnKtDlldeeallekleerlrqlnpea 173
                  +++l+lnK  l++ e   e ++++l++++p++
  KKY14107.1 626 ISNVLILNKKALVNGES--ELFQAELEKFRPHQ 656
                 689**********9993..46777777777765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0087
                 EEEEEESTTCCHHHHHHHHHCT CS
        cobW   2 vtvltGflGsGKTtLlnhllen 23 
                 +t + G++GsGKT+L  ++ +n
  KKY14107.1 955 ATEIYGPPGSGKTALAMQIASN 976
                 57799**********9988854 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.19
                  CTT-HHHHHHHHHHHHTT-SEEEEEECTT CS
        cobW   65 lredllkelealeereerldviliEttGl 93  
                  ++ dl+++l++l++++ +l vi+i +tG 
  KKY14107.1 1109 IAGDLSNALAKLAALR-NLAVIVINQTGT 1136
                  6789************.9**********5 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0005      0.43       7      30 ..     958     981 ..     952    1148 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0005
      AAA_24   7 iyGpsgiGKTtlakelgpkplfid 30 
                 iyGp+g+GKT la ++  ++l  d
  KKY14107.1 958 IYGPPGSGKTALAMQIASNALHAD 981
                 9**************988887765 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0008      0.68       3      25 ..     958     980 ..     957     994 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0008
  RNA_helicase   3 lyGpsgeGKStlakeLakallkk 25 
                   +yGp+g GK+ la ++a++ l +
    KKY14107.1 958 IYGPPGSGKTALAMQIASNALHA 980
                   7**************99988833 PP

>> DUF2383  Domain of unknown function (DUF2383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2       1.4   1.2e+03      20      62 ..     211     257 ..     200     278 .. 0.67
   2 ?    1.7   0.1      0.38   3.3e+02       8      50 ..     500     540 ..     498     544 .. 0.77
   3 ?   -2.8   0.2       9.1   7.8e+03      28      55 ..     595     622 ..     592     624 .. 0.83
   4 ?    9.7   0.1    0.0012       1.1       2      58 ..     710     764 ..     709     777 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.4
                 HHHHHHT--SHHHHHHHHHHHH....HHHHHHHHHHHHHHHCT---- CS
     DUF2383  20 ykeaaekvkdpqlktlleriae....ereeaaeeLqseiralggepe 62 
                 y++a e v+++  k++++r  +     ++++ + L+++ +al +e +
  KKY14107.1 211 YTQAMEGVQENVAKAVFDRTWQtlttVKAAHTASLSEYYQALVDEDA 257
                 88888888888888888876551111566777777777777765544 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.38
                 HHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHH CS
     DUF2383   8 dLietlkdgeegykeaaekvkdpqlktlleriaeereeaaeeL 50 
                 +L +tl+d +++y++ ++++ +++ +  l   a+++e   eeL
  KKY14107.1 500 RLTTTLRDDVRTYRSTIDQASNSDAQ--LHATARQYETDFEEL 540
                 6899*****************88765..555555666666666 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 9.1
                 -SHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     DUF2383  28 kdpqlktlleriaeereeaaeeLqseir 55 
                 k ++l + l+ i +er++  + L++++ 
  KKY14107.1 595 KVEDLLKKLNLIKRERSQVLKDLKEKVH 622
                 5568888899999999***999999986 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
     DUF2383   2 vieaLndLietlkdgeegykeaaekvkdpqlktlleriaeereeaaeeLqseiralg 58 
                 +++a +dLi++l  ++ +y e ++ v+  +l++  ++++++r+   ++L ++i++++
  KKY14107.1 710 AVNAFEDLIQGLLRAQSFYGELKDSVE--SLEQNVDSFVNNRRGEGSQLLNQIEQNK 764
                 799************************..9**********************99876 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2       1.6   1.4e+03     133     187 ..     468     522 ..     406     559 .. 0.48
   2 ?   -1.0   2.4       1.5   1.3e+03     107     177 ..     680     763 ..     593     771 .. 0.59
   3 ?    9.1   0.0    0.0012      0.99      15      42 ..     951     978 ..     942    1014 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.6
      AAA_11 133 leklakelrafeeeeekeklkkskekskskleqerrklkkerkelskeleeaees 187
                 l+k +k+l+ +e+++ek ++k+  e +++  ++  ++l++ ++++++++++a +s
  KKY14107.1 468 LDKCSKQLDMEESVCEKMRSKYGGEWTQQPSSRLTTTLRDDVRTYRSTIDQASNS 522
                 3333333333344444433333333333333333333333333333333333332 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.5
      AAA_11 107 vsleekvekrlekeekaqlakeiskeleklakelrafeeeeek...............eklkkskekskskleqerrklkkerkel 177
                 +  +++v++ ++k  + +++k+  +  +k++k+++afe+ ++                e+l+++ + + ++++ e ++l ++++++
  KKY14107.1 680 LLQDKRVRSDQQK--YERITKSRGQVMAKYKKAVNAFEDLIQGllraqsfygelkdsvESLEQNVDSFVNNRRGEGSQLLNQIEQN 763
                 2223333333333..45555555555555555555555555447777777766666665555555555555555555555555444 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0012
      AAA_11  15 seseitliqGPPGtgKTktivellsqll 42 
                 s+ + t i GPPG+gKT   +++ s++l
  KKY14107.1 951 SRGQATEIYGPPGSGKTALAMQIASNAL 978
                 5666899***********9999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       978  (0.0545485); expected 358.6 (0.02)
Passed bias filter:                      603  (0.0336327); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 1.05u 0.35s 00:00:01.40 Elapsed: 00:00:00.52
# Mc/sec: 8790.92
//
Query:       KKY14137.1  [L=269]
Description: putative glutathione s-transferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-32  111.0   0.1    5.2e-32  110.0   0.0    1.5  2  GST_C_3   Glutathione S-transferase, C-terminal domain
    2.7e-06   27.5   0.0    4.4e-06   26.8   0.0    1.3  1  GST_C     Glutathione S-transferase, C-terminal domain
     0.0045   17.0   0.0     0.0082   16.1   0.0    1.5  1  GST_C_2   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.6   1.6e+04      29      42 ..      98     114 ..      95     127 .. 0.55
   2 !  110.0   0.0   8.8e-36   5.2e-32       1      99 []     138     250 ..     138     250 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.6
                 HHCHHHHHHHHHH...C CS
     GST_C_3  29 lpkflkyfekvlk...k 42 
                  p++l y+ + l    k
  KKY14137.1  98 TPNILLYLGQQLGlasK 114
                 56666666666665433 PP

  == domain 2  score: 110.0 bits;  conditional E-value: 8.8e-36
                 HHHHHHHHCCCC..SHCHHH.HHHHHHHHHHHHCHHHHHHHHHH...CHGTSSSSTTS--HHHHHHHHHHHHHHHH........TCC.CC-HHHHHHHH CS
     GST_C_3   1 hDlhhpiaklly..dqkeea.ekkkefleerlpkflkyfekvlk...kkgggylvgdklTyADlalfqvldgleea........eal.kkfpklkalye 84 
                 hD+hhp+a+ ly  dqkeea +k+++++e+rlpkfl+yfe+vl+   +kgg+yl+g++lTyADl+lfq +dg+++a        + +  k+ k  aly+
  KKY14137.1 138 HDVHHPVAVGLYyeDQKEEAkRKADDYRENRLPKFLGYFERVLEgpaSKGGEYLYGGELTYADLVLFQTIDGVSFAfpkcvgklK-DsGKYSKTFALYD 235
                 8**********9999999999************************9447777************************776665322.145677777**** PP

                 HHHTSHHHHHHHCTC CS
     GST_C_3  85 rvearpkikaYlesr 99 
                 rv++r++ikaYl s+
  KKY14137.1 236 RVKERERIKAYLGSD 250
                 ************875 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   7.4e-10   4.4e-06       3      92 ..     139     240 ..     138     241 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 7.4e-10
                 HHHHHHHHHHHSTTH..HHHHHHHHHHHHHHHHHHHHHHHHHH.....TSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTT.....TTTSHHHHHHHHHH CS
       GST_C   3 dlisqilllfyvkae..ekkeelvdealekvaevlsaleeelk.....kqdylvGdkltlADialvpilnwlqrlglafg.....qekfpnlkawleri 89 
                 d+++++++ +y +++  e k+++ d  ++++ + l ++e +l+     +  yl G +lt+AD++l+  ++++    ++++     + k+ +  a ++r+
  KKY14137.1 139 DVHHPVAVGLYYEDQkeEAKRKADDYRENRLPKFLGYFERVLEgpaskGGEYLYGGELTYADLVLFQTIDGVSFAFPKCVgklkdSGKYSKTFALYDRV 237
                 6778888888888888888888999999999999999999999****99*********************88887777776777777777777777777 PP

                 HTS CS
       GST_C  90 mar 92 
                  +r
  KKY14137.1 238 KER 240
                 665 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.4e-06    0.0082      13      55 ..     171     222 ..     149     247 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.4e-06
                 HCHHHCTTT---SS......CTTCS--HHHHHHHHHHHHHHHHHHS-....- CS
     GST_C_2  13 aaldaleahLadsp.....flfGdqptlaDialapflvrlraagpgf....d 55 
                 ++l  +e+ L++       +l G+++t+aD +l+ ++  + +a+p+      
  KKY14137.1 171 KFLGYFERVLEGPAskggeYLYGGELTYADLVLFQTIDGVSFAFPKCvgklK 222
                 5555555555543355568************************886555442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.50
# Mc/sec: 1611.13
//
Query:       KKY14138.1  [L=448]
Description: putative family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.6e-125  416.7   3.2     1e-124  416.5   3.2    1.0  1  MmgE_PrpD  MmgE/PrpD family


Domain annotation for each model (and alignments):
>> MmgE_PrpD  MmgE/PrpD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  416.5   3.2  5.6e-129    1e-124       1     436 [.       3     434 ..       3     437 .. 0.96

  Alignments for each domain:
  == domain 1  score: 416.5 bits;  conditional E-value: 5.6e-129
                 HHHHHHHHHH-----H..HHHHHHHHHHHHHHHHHHHHTT-HHHHTT-SSSTT-B-TT-EE-TT...SS-EE-HHHHHHHHHHHHHCTS-S-BEESSSE CS
   MmgE_PrpD   1 teqlaefvaelryddlpeevverakrlilDtlGvalaglrepavkkaleavkgtggpggatvig...tgerlspvkAAfvnGaaihalDfdDthlaael 96 
                 te+la+++++l+y++lp+evv++a r +++++G+a++gl++p +++a++a+  + g+++++++g    + r+++ +AA++nG+a+h++D+dDthl++++
  KKY14138.1   3 TERLAKWAVDLSYSSLPDEVVQAAVRSFYNWAGCAIGGLSHPTTTIARHALAPFFGKPTSSILGdngDENRTDASHAALINGIASHVHDYDDTHLETII 101
                 799************************************************************9433357***************************** PP

                 E-GGGGHHHHHHHHHHHHHHB.HHHHHHHHHHHHHHHHHCCC--SCCCT...B-THHHHHHHHHHHHHHHTT--HHHHHHHHHHHHCT-B-BSGGGSTT CS
   MmgE_PrpD  97 hhpsdvlpaalAvAealgasg.kdlLtAivvGyEvqgrlglalsfnhyg..fhdtvtlgtfgaaaaaakLlgLdaeqianAlgiaatqaaglrqyrhag 192
                 h+++ v +a+lA +ea g+ + +d+++A+v+G+E+++++gl ++++hy+  +h t+t g++gaa+a++kLl+L +e +++A+gia tq +glr+++++ 
  KKY14138.1 102 HPTGPVASALLAQSEAHGSVKtEDFILALVAGMEAECKVGLGVWPKHYDigWHITSTTGSIGAAVAVGKLLKLQKESMQHAIGIASTQVTGLREMFGSD 200
                 ******************9977***************************************************************************** PP

                 T--CHHCHHHHHHHHHHHHHHHHHTT---TTTTT-TTTSHHHHHSTT-----S.S-SS...SHHHHC-B---SSS-CCCHHHHHHHHHHHHHHCCT... CS
   MmgE_PrpD 193 tkskklwaaGdAarnGveaallAkrGftGpsdilegewGflavlsggkdlelevkplgegesweienvlfKpypaerhthaaidaalklraelklk... 288
                 tks ++   G+Aa+nG++aa lA++G+t++ + le+++G+++v+s  +++++++  lg  + wei++++fKp+p++++ h++ida+ +l++++ ++   
  KKY14138.1 201 TKSFHV---GRAAQNGLMAAILASKGYTASLQSLEAKRGWINVVSASNSMDEQISSLG--QVWEIAKNAFKPFPCGIVVHPVIDACSQLHRDIVDRglv 294
                 **9988...********************************************99999..9************************************** PP

                 CCCEEEEEEEE-HHHHHHC---S---SHHHHCT-CCHHHHHHHHCS---CCCCSCCCCTSCHHCCHHCCEEEEE-HHHHHHHTTT---EEEEETTS-B- CS
   MmgE_PrpD 289 pddIesieirtseaalriigkkgppenradadhSlqyvvAvalldgrvtledfederladpevqaLrekvevvedpeltadypekrsivvvvlkdggrt 387
                 ++dI+s++ r+++ +l+++gkk +p+  ++a++S+++  A++l+ g++++++++d+++ d+++ ++r+k++ +++++l ad+    + + v+++dg++ 
  KKY14138.1 295 ASDIRSVHARVHPLVLELTGKK-TPQDGLQAKFSVYHGGAIGLVLGKAGPAQYDDKVVLDDKITTIRDKITATANQSLGADE---AE-IIVEMRDGTK- 387
                 **********************.********************************************************988...33.6788877766. PP

                 --EEESS-TTSGGHHHHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHHS CS
   MmgE_PrpD 388 leerveypkGhprnplsreeleeKfrrlaegvlseeeaereeileevle 436
                 l+++v +++G+ + p+ + +leeKf + ++ vl+  ++ +e++ + +++
  KKY14138.1 388 LTKHVRHAIGSLEVPMNNTQLEEKFIDQVSLVLG--KEGAEKASKTCWA 434
                 6889******************************..5555566666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2924.05
//
Query:       KKY14139.1  [L=497]
Description: putative mfs sugar [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-94  316.2  18.4    4.2e-94  316.0  18.4    1.0  1  Sugar_tr  Sugar (and other) transporter
    8.8e-19   67.6  45.3    3.3e-18   65.8  22.3    2.1  2  MFS_1     Major Facilitator Superfamily
      0.008   14.6   0.8      0.008   14.6   0.8    1.4  2  TRI12     Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
       0.48   10.7   6.0       0.31   11.3   0.7    3.2  3  DUF2530   Protein of unknown function (DUF2530)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.0  18.4   9.4e-98   4.2e-94      10     452 .]       5     452 ..       2     452 .. 0.94

  Alignments for each domain:
  == domain 1  score: 316.0 bits;  conditional E-value: 9.4e-98
                 HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH.......HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TG CS
    Sugar_tr  10 llfgYdtgvigafltllkfaknfglsksksskee....ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvev 104
                 +lfgY  gv g+++ l++f+ +f ++ + +++ +     s   g +v+ + +Ga++G+l    lgd++GRk +++ +a+++++g+++  ++    ++ +
  KKY14139.1   5 ILFGYYNGVAGGIIDLPAFVQMFPQTDTINTTGAqrtyNSQIRGTVVATYTLGALVGALSCFVLGDKLGRKRTIMLGAFVSIVGSIIECTSF---ELGQ 100
                 79**********************999988888788887777899***********************************************...9*** PP

                 GGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT- CS
    Sugar_tr 105 livgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekgk 203
                 +i+gRv++G+g G++s+++P ++ E + + +Rg++v+l  l+i++G  + a++++g+++ts+ + wr++l++ +++al++l+ +  +PESPr+lv+kg+
  KKY14139.1 101 FITGRVFAGLGFGAISATTPNWQTECSRAGHRGFVVMLEGLFISAGLALQAWLNYGMSHTSGGVSWRFPLAFPCFLALIVLFSMPIWPESPRWLVKKGR 199
                 **************************************************************9************************************ PP

                 HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH......HTTHHHHSH.....HHHHHHHHHHHHHHTTHHHHHHHTTTHHHH.SS-THH..HHHHHHH CS
    Sugar_tr 204 eeeakevlaklrgeedadrelaeekdsleaeqeee.kaswkellsskt..vrqrlligvvlqifqqltGinaimyysptifen.lglsks..llvtiiv 296
                  eea+ ++a l++  ++ +e+++e++++e++ +e+ k   + ++++       r++i+++ q+fqq++Gin+i +y ptif++ lgls +   + ++ v
  KKY14139.1 200 IEEARHIMAALDDIHPDGPEIVQEIQEIEESLQETgKGNFRDIFRNGParFANRAFIAAASQCFQQMSGINVIAFYQPTIFRTfLGLSSDtaRVLSATV 298
                 *******************************9988999999999995589999****************************996899999777788888 PP

                 HHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHH CS
    Sugar_tr 297 gvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavn 395
                  +++++   +++f+++r+GRR+l+++Ga+g+ +c++i++  +   ++++  a  + i+f++lf  +f +g  ++ ++++sE++p+svR+  +a+++++ 
  KKY14139.1 299 FTWQTFCAPIGAFTIERVGRRKLMIFGAVGQGMCMAIIA-GCVSHPSEH-QAVQAGIAFVYLFSLFFVTGYLGLAFLYSSEIAPLSVRTPITALSTTST 395
                 888888888889**************************9.444444443.4678889****************************************** PP

                 HHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHH.HHHHHS--STT--CCCCGGGT CS
    Sugar_tr 396 wlanflisllfpiiteaigggyvflvfaglavlfii.fvfffvpetkgrtleeieelf 452
                 w++nf +    p+ ++++g +++f+++a+++   i+  v+f +pet g+ le ++++f
  KKY14139.1 396 WVFNFTVVEASPTGFDTLG-YKYFIIYAAINWCLILpTVYFLFPETQGLHLESVDRIF 452
                 *******************.*********99666553899***************987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8  22.3   7.3e-22   3.3e-18      31     326 ..      44     376 ..      20     394 .. 0.74
   2 !   16.0  14.9     1e-06    0.0045       6     127 ..     262     392 ..     254     450 .. 0.66

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 7.3e-22
       MFS_1  31 pseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..fasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraiglls 127
                  +  g+++++y+lga+v++l   +l+d++Gr+r+++lg++++++g+++ +  f   l  ++ +rv++Glg ga+ ++   + ++ +   +rg+++ l +
  KKY14139.1  44 SQIRGTVVATYTLGALVGALSCFVLGDKLGRKRTIMLGAFVSIVGSIIECtsF--ELGQFITGRVFAGLGFGAISATTPNWQTECSRAGHRGFVVMLEG 140
                 455689***************************************44444132..3446**************************************** PP

       MFS_1 128 agfslGailgpllgglla.sslg..Wravfyilaivsllafvlfl.lllpeepperkrkspkeee.........................kgtgpaplv 197
                 +++s+G +l + l   ++ +s+g  Wr +  + ++++l++  lf     pe+p+   +k  +ee                          ++ ++++  
  KKY14139.1 141 LFISAGLALQAWLNYGMShTSGGvsWRFPLAFPCFLALIV--LFSmPIWPESPRWLVKKGRIEEArhimaalddihpdgpeivqeiqeieESLQETGKG 237
                 ******************7777788998888888888888..533033344444444444444449999999999999998888877777666666666 PP

       MFS_1 198 pawkallkdpvlw...illialllfffgfsg....lltllplylqevlglsglllaglllallalvgailallagrls.drlgrrrrlllallllllaa 288
                 + ++ ++++ +      ++ia+++ +f  ++    + ++ p+++++ lgls    ++ +l+++ + ++ ++  +g++   r+grr+ ++++ ++  ++ 
  KKY14139.1 238 N-FRDIFRNGPARfanRAFIAAASQCFQQMSginvIAFYQPTIFRTFLGLS--SDTARVLSATVFTWQTFCAPIGAFTiERVGRRKLMIFGAVGQGMCM 333
                 6.999999998733564555555553222224666****************..89999999999999999777777776****9999999999988888 PP

       MFS_1 289 lglallavt.........ssavllllvlvliGfglgfvfpsllalas 326
                 +++a +              a+++l++l++    +  + ++++ + s
  KKY14139.1 334 AIIAGCVSHpsehqavqaGIAFVYLFSLFF----VTGYLGLAFLYSS 376
                 888777666776655444333333333333....2222333333333 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1e-06
       MFS_1   6 flsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..fa....ss.lw.lllvlrvlq 95 
                 ++  ++  ++++++ + +  + lg+s +++  l ++++  + + ++++++ ++r+Grr+++++g+++ + ++++++  ++    ++ +   ++++ +++
  KKY14139.1 262 CFQQMSGINVIAFYQPtIFRTFLGLSSDTARVLSATVFTWQTFCAPIGAFTIERVGRRKLMIFGAVGQGMCMAIIAgcVShpseHQaVQaGIAFVYLFS 360
                 44444444455555555888889************************************************6666645434434114332344444444 PP

       MFS_1  96 Glgagalfpagaaliadwfpkeergraiglls 127
                  ++  +++ ++  + ++++p + r+  ++l +
  KKY14139.1 361 LFFVTGYLGLAFLYSSEIAPLSVRTPITALST 392
                 44445555555555555555555555555555 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.8   1.8e-06     0.008      78     240 ..      45     211 ..      34     214 .. 0.68
   2 ?   -3.9   0.1      0.72   3.2e+03     101     127 ..     312     340 ..     285     367 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.8e-06
       TRI12  78 ensslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpaga.splfvgelmsnktk.flgl...liv 171
                 + ++ + + +t+g  v  l    l d++gr+  ++l   + +vg+i+ ct+  +  +++   + g+  g   a +p +  e      + f+ +   l +
  KKY14139.1  45 QIRGTVVATYTLGALVGALSCFVLGDKLGRKRTIMLGAFVSIVGSIIECTSFELGQFITGRVFAGLGFGAISAtTPNWQTECSRAGHRgFVVMlegLFI 143
                 55566677899*********************************************9999999999888765415777777644332213322011233 PP

       TRI12 172 sipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaqlhgkkvrkreelakld 240
                 s+   ++++   y     +   swr+ +     ++ i +  + +w   p +   +g+  + r+ +a ld
  KKY14139.1 144 SAGL-ALQAWLNYGMSHTSGGVSWRFPLAFPCFLALIVLFSMPIWPESPRWLVKKGRIEEARHIMAALD 211
                 3332.2222233333334444467776666666777777777777777777777777777777777776 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 0.72
       TRI12 101 ltdrfgrrpfvilthi.lglvgaiv.gct 127
                   +r+grr ++i   +  g+  ai+ gc 
  KKY14139.1 312 TIERVGRRKLMIFGAVgQGMCMAIIaGCV 340
                 45788888888876653466655442665 PP

>> DUF2530  Protein of unknown function (DUF2530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.99   4.4e+03      41      58 ..      50      67 ..      43      71 .. 0.66
   2 ?   11.3   0.7     7e-05      0.31      16      72 ..      77     133 ..      72     136 .. 0.89
   3 ?   -1.0   0.0      0.49   2.2e+03      53      66 ..     293     306 ..     290     313 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.99
     DUF2530 41 wlpvclaGlvvGllGlai 58
                ++ +   G++vG+l   +
  KKY14139.1 50 VVATYTLGALVGALSCFV 67
                455666777777776544 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 7e-05
     DUF2530  16 vivvgtllWlvalvvllvvgdaleswlpvclaGlvvGllGlaiflwQRrAaRrGsrg 72 
                  i++g+ + +v+ ++  ++ +  + ++    aGl+ G++  +   wQ + +R G+rg
  KKY14139.1  77 TIMLGAFVSIVGSIIECTSFELGQFITGRVFAGLGFGAISATTPNWQTECSRAGHRG 133
                 5788888889999998888888888999999************************98 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.49
     DUF2530  53 llGlaiflwQRrAa 66 
                 +l  ++f+wQ   a
  KKY14139.1 293 VLSATVFTWQTFCA 306
                 68899*****7665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 3341.61
//
Query:       KKY14140.1  [L=468]
Description: hypothetical protein UCRPC4_g06831 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3305.03
//
Query:       KKY14141.1  [L=487]
Description: putative acyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-34  117.1  35.7    9.9e-34  116.9  35.7    1.1  1  Acyl_transf_3  Acyltransferase family


Domain annotation for each model (and alignments):
>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.9  35.7   5.5e-38   9.9e-34       2     315 ..      59     425 ..      58     463 .. 0.88

  Alignments for each domain:
  == domain 1  score: 116.9 bits;  conditional E-value: 5.5e-38
                    xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxx RF
  Acyl_transf_3   2 aylDllRgiAillVvf.lHaliayspdagrgspiqasqssqi..............aflggfgvplFFllSGffla..........amlyrrrgls 72 
                    aylD+lRg+A++lV + +H l+a  + a  g ++   ++                 ++ g+++v++FF++SG++l+           +++   +l 
     KKY14141.1  59 AYLDGLRGFAAFLVYWhHHQLWAREHIAAEGHFENGWGY--NgnyyfasfpgirtfFTGGHYAVTVFFVISGYVLStkplsliqagEYTKLGDNLA 152
                    79**************77788866666655544433333..2346667788999999*************************************** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3  73 klikrRilrlliplliwllliillialvaghiqanasanvtlfdet..........kglmfllfefpatghlWfLwalfvlylllplllrllrkvr 158
                    ++++rR++rl ip++++++l++ +++ +  +++     n+    ++           +  + + +f ++ h W+++++f ++++++  l+++ +  
     KKY14141.1 153 SALFRRWPRLHIPVIVTSFLYMSSWHAFGIWTSFERKINYRGEVWNwyaefknfsfVFRSGGDPWFLYNFHAWSIPVEFRGSIAIYTALMAVSRCT 248
                    ************************************999999877789************************************************ PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........ RF
  Acyl_transf_3 159 kshlllllilllllslvfirhelfgpatsvgllplpsvlallfflfGalladaddrdrnlsrglkislllsllllalillalfgqtdg........ 246
                    + ++l++ ++l++++ ++   ++                  ++f +G+ll d+d    + ++   +s + s+  l+++ l++ +++ g        
     KKY14141.1 249 RNGRLWCEAGLIFYFMYIVDGWF-----------------GAMFMSGMLLCDLDLLAAKDNLPSFFSKFESFKELIFYNLLVISVYLGgvpshtld 327
                    ***********************.................**********************9999999999999999999999999999999999 PP

                    ............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............. RF
  Acyl_transf_3 247 ............gglvasvliqsaslllvslgimllllllfalpsrsafk...llrylgkiSygiYliHlpllmllqkllrdw............. 314
                                ++++++++  ++ ++++++++ +l+ +  + p+++ f+    ++ylg+ S+++Yl+H+p+l++l++ +++              
     KKY14141.1 328 ienlrqspgwyyLSFLKPQAPLDYKWFYLLFAATFLVAAIPRIPWLKTFFetrFCQYLGRVSFALYLVHGPVLWILGDRFYAAvgytrevhntglk 423
                    ***********************************************999******************************9997766666555554 PP

                    .x RF
  Acyl_transf_3 315 .g 315
                     +
     KKY14141.1 424 hW 425
                    41 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3349.15
//
Query:       KKY14142.1  [L=430]
Description: putative glycosyl transferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-13   49.3   0.1    1.3e-12   48.2   0.1    1.6  1  Gly_transf_sug  Glycosyltransferase sugar-binding region cont


Domain annotation for each model (and alignments):
>> Gly_transf_sug  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.1   7.3e-17   1.3e-12       7      94 ..      86     171 ..      80     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 7.3e-17
  Gly_transf_sug   7 aieslakahpdyqvvvlskelekvrvaildlefllsdtpwfeeakkllplfialsDllRlaiLykyGGiYlDtDvivlkslrnsigae 94 
                     + +++ +++p +++ vl+++ ++  v++   ++ ++  p +  ++k+l+  i ++DllR++++y  GG+Y+D+Dv  lk+l +  ++e
      KKY14142.1  86 TARTWTEKNPGWRYEVLTDSNDEYYVETHFGPYGFN-RPDIVYTYKTLTAKIIKADLLRYLVMYVEGGVYTDIDVEALKPL-DRFIPE 171
                     5689******************77777776666666.565666899999********************************.887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1129  (0.0629706); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.54
# Mc/sec: 2387.21
//
Query:       KKY14143.1  [L=380]
Description: putative oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-15   55.7   0.1    1.3e-14   54.3   0.1    1.6  1  FAD_binding_3  FAD binding domain
    8.5e-08   32.7   0.3    7.2e-06   26.5   0.1    2.4  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    1.3e-06   28.3   0.1    0.00018   21.2   0.1    2.2  2  DAO            FAD dependent oxidoreductase
    4.3e-06   26.2   0.2     0.0012   18.2   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00045   19.6   0.1      0.065   12.5   0.0    2.3  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    0.00058   20.0   0.0     0.0013   19.0   0.0    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0015   18.2   0.0     0.0024   17.5   0.0    1.4  1  ApbA           Ketopantoate reductase PanE/ApbA
     0.0015   17.7   0.1     0.0023   17.1   0.1    1.3  1  CoA_transf_3   CoA-transferase family III
  ------ inclusion threshold ------
      0.011   14.9   0.1      0.015   14.4   0.1    1.3  1  FAD_binding_2  FAD binding domain
       0.12   12.8   0.1       0.31   11.5   0.1    1.8  1  NAD_binding_7  Putative NAD(P)-binding
       0.13   11.6   1.7       0.22   10.8   0.6    2.0  2  FAD_oxidored   FAD dependent oxidoreductase
       0.21   10.6   0.6       0.46    9.5   0.3    1.6  2  GIDA           Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.1   8.4e-18   1.3e-14       2     341 ..       4     357 ..       3     363 .. 0.76

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 8.4e-18
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHT.T-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHH...CH CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrql.Gledrilaegapnelmgealynelsdtpkaradle...le 93 
                     +Vl+VGa+ aG + a  L++aG +v+++e+  +   +++   + +  + ++r++ G+e+ +++++   e+++++  n    +p a ++ +    +
     KKY14143.1   4 LKVLVVGASIAGPTVAYWLAKAGASVTVIERFPKLRTNGQNIDIRTAGVTVMRKMpGMEAAVRSKTMEMEGISFVRDNG---RPFATIKATgnpDQ 96 
                    68**************************************************9876**********9999888888888...43333333343334 PP

                    HCST-CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEEE CS
  FAD_binding_3  94 sspervtvypqteleriLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvl 188
                    +s  + + +   +l +iL +  +    ++  f+++v s++qde+   ++  + ++g   t + + +v++DG+ S++r ++g+     +++ + ++ 
     KKY14143.1  97 QSLVSEYEIFRGDLAQILFDLTKDNEnTKYVFGEKVASIQQDEKDDGPVTVEFANGLA-TSKYDLVVACDGATSRTR-AIGLGGGVRDHIKPTNSW 190
                    555555666678899999999888888******************9888888888888.999999*********887.588888888888889999 PP

                    EEEEEC-SCCCTTC..CEEEEECCTTEE...............EEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEEEE CS
  FAD_binding_3 189 dvlfdadlsdivep..lvlilsaesrgv...............mviPlentlerfyvqvearaekeersekfteeevkarlreivgektldveiee 267
                     + f+ d + +          ++  r++                + P+++++ +   + ea+ + ++  ++f  +++  +  +  ++ +   + ++
     KKY14143.1 191 ATFFSIDQDLLQGSkmGQTYSATGGRFIaagpdpsgmnrvvlmGIHPRDDGDAALPPFREAMSQGDDALKRFVARHYEGAGWKTEEIVKGMMKTSD 286
                    888888777444446544444555555555555555677777777777776665555555555555555555555555555555555556666667 PP

                    EEEEEEEEEEESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHH CS
  FAD_binding_3 268 vsawtvaqrvaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerrav 341
                    + a ++ q  + ++ kgr  l+GDA  +  Pt G G  +ai  a+ La   + +       + L +Yee+ r+ 
     KKY14143.1 287 FYANEIVQVKTPSLYKGRFALVGDAGYAPDPT-GTGTTLAITGAYILAGEVGRHKG--NLAAGLRSYEERMRPL 357
                    777777777788999**********9998887.79**********99988777655..3456677777776665 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1   4.8e-09   7.2e-06       1      68 [.       5      74 ..       5      79 .. 0.92
   2 ?    3.9   0.0     0.054        81      40      72 ..     108     141 ..      96     153 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 4.8e-09
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHT.TEEEECSEEEEEEEE CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekn.gievllntkveeieg 68
                kv+vvG++  g  +A  la+ g++Vtv+er +kl+ ++ + +++++  + ++k+ g+e    +k+ e+eg
  KKY14143.1  5 KVLVVGASIAGPTVAYWLAKAGASVTVIERFPKLRtNGQNIDIRTAGVTVMRKMpGMEAAVRSKTMEMEG 74
                79**********************************************9999999999888888777765 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.054
                 HHHHHHHHHHHHHT.TEEEECSEEEEEEEEETTS CS
   Pyr_redox  40 eeaskilqeklekn.gievllntkveeiegsedg 72 
                  ++++il +  ++n + + ++++kv++i+++e+ 
  KKY14143.1 108 GDLAQILFDLTKDNeNTKYVFGEKVASIQQDEKD 141
                 578999999999999**************77653 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   1.2e-07   0.00018       1      31 [.       5      37 ..       5      67 .. 0.88
   2 !    5.2   0.0     0.009        13     161     234 ..     124     200 ..     108     301 .. 0.63

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.2e-07
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdi 31
                +v+++G+ i+G ++Ay+La++g  Vt++e+ + 
  KKY14143.1  5 KVLVVGASIAGPTVAYWLAKAGasVTVIERFPK 37
                59****************************854 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.009
                 -EEEESECEEEEEEEE..TCEEEEE..EECTEEE.EEEEEEEE--GGGHH.HH.HTTCTTTSEEEEEEEEEEEEEECCTHS CS
         DAO 161 veilegtevtgleeed..gkvwgve..rttpgen.daadavVnaaGawsd.ll.gllkeldlpispvrgqvlvlkplsekl 234
                  + ++g++v ++++++  ++ ++ve  +   g   +++d vV + Ga s+  + gl + ++  i+p+ +    +  +++ l
  KKY14143.1 124 TKYVFGEKVASIQQDEkdDGPVTVEfaN---GLAtSKYDLVVACDGATSRtRAiGLGGGVRDHIKPTNSWATFF-SIDQDL 200
                 5789999*****6644335667775553...655457899********99865444444455667776666666.444433 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   7.9e-07    0.0012     144     186 ..       5      48 ..       2      85 .. 0.70
   2 !    6.0   0.0    0.0041       6.1     194     244 ..     119     174 ..      98     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 7.9e-07
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveardrll.raldkels 186
                  +++vvG++  G  +A  lak+g+ vt++e+ ++l  ++ + +++
   KKY14143.1   5 KVLVVGASIAGPTVAYWLAKAGASVTVIERFPKLRtNGQNIDIR 48 
                  67888888888888888888888888888888886544444444 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0041
                  HHT.TEEEEESCEEEEEEETTE...EEEEEETTSCE.EEESEEEE-S-EEES-HHC CS
                  xxx.xxxxxxxxxxxxxxxxxx...xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 194 eke.Gvevklgtsvkeidgnge...klevvledgee.idadlvvvavGvrpstell 244
                  +++ + + ++g++v  i+++++    ++v+  +g    ++dlvv + G + +t+ +
   KKY14143.1 119 KDNeNTKYVFGEKVASIQQDEKddgPVTVEFANGLAtSKYDLVVACDGATSRTRAI 174
                  444589999*********99998776778888887679***********9999765 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   4.4e-05     0.065     164     213 ..       3      52 ..       1      80 [. 0.82
   2 !    4.8   0.0    0.0096        14     218     274 ..     114     174 ..      90     187 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.4e-05
  Pyr_redox_3 164 gqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpd 213
                  + kv+V+G++  +  +A+ l+++ga+Vtv+ r  +++++ ++++++   +
   KKY14143.1   3 KLKVLVVGASIAGPTVAYWLAKAGASVTVIERFPKLRTNGQNIDIRTAGV 52 
                  669*****************************999999988777665555 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0096
  Pyr_redox_3 218 leelvke.ekikvlfnaevkeikek...eeeykvktedgkkvevkddvvlatGykpdlsfl 274
                  l +l k  e+ k +f ++v +i+++   +  ++v++++g  ++++d vv++ G ++ ++ +
   KKY14143.1 114 LFDLTKDnENTKYVFGEKVASIQQDekdDGPVTVEFANGLATSKYDLVVACDGATSRTRAI 174
                  55555555667888888888887651115679********999999999999999887665 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   8.4e-07    0.0013       1      31 [.       8      38 ..       8      55 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 8.4e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrl 31
                   +vGa ++G + Ay Lakag++v+++e+ ++l
     KKY14143.1  8 VVGASIAGPTVAYWLAKAGASVTVIERFPKL 38
                   8*************************97765 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.6e-06    0.0024       1      59 [.       6      62 ..       6      78 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.6e-06
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEEETT.CEEEEEECEEEC CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknGlrltseg.geeilrppeals 59
                ++++Ga   G ++a+ Lakaga vt+i r +   +l++nG ++++++ g +++r+   ++
  KKY14143.1  6 VLVVGASIAGPTVAYWLAKAGASVTVIERFP---KLRTNGQNIDIRTaGVTVMRKMPGME 62
                689**************************99...899******99998777777665555 PP

>> CoA_transf_3  CoA-transferase family III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   1.6e-06    0.0023       3      35 ..       3      35 ..       1      58 [. 0.88

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.6e-06
  CoA_transf_3  3 GvrVldlsqvlaGplatslLAdlGAeVIkvEpp 35
                   ++Vl ++  +aGp+++ +LA  GA V+ +E+ 
    KKY14143.1  3 KLKVLVVGASIAGPTVAYWLAKAGASVTVIERF 35
                  689****************************86 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1     1e-05     0.015       2      49 ..       6      56 ..       5      90 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1e-05
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS...GGGG--S-EE-TT CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgg...atawsqGgidavl 49
                   v+V+G+ +AG + A+ +a+aG++v+v+e  ++ +    ++ +  +g+ +++
     KKY14143.1  6 VLVVGASIAGPTVAYWLAKAGASVTVIERFPKLRTngqNIDIRTAGVTVMR 56
                   9***************************99998875566666666666655 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00021      0.31       6      46 ..       2      63 ..       1     174 [. 0.61

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00021
  NAD_binding_7  6 kgkkvlvvGgGevAarkvrklleagakvtvvapevkeele.....................e 46
                   ++ kvlvvG+   + + ++ l++aga vtv+    k  ++                      
     KKY14143.1  2 SKLKVLVVGASIAGPTVAYWLAKAGASVTVIERFPKLRTNgqnidirtagvtvmrkmpgmeA 63
                   6789**************************98764222224333344444444444433331 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.6   0.00015      0.22       2      34 ..       6      38 ..       5     157 .. 0.89
   2 ?   -0.8   0.0       0.5   7.5e+02     118     166 ..     290     341 ..     256     364 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveergvl 34
                  v+VvG+ +aG + A+  a+aGa+v ++e+ + l
    KKY14143.1  6 VLVVGASIAGPTVAYWLAKAGASVTVIERFPKL 38
                  9***************************98765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.5
  FAD_oxidored 118 kriesvtveske.g..rktirAkvfiDATgdGdlaalaGvpyrvGresreet 166
                   ++i +v++ s   g    +  A +  D Tg G  +a +G+ +  G+ +r++ 
    KKY14143.1 290 NEIVQVKTPSLYkGrfALVGDAGYAPDPTGTGTTLAITGAYILAGEVGRHKG 341
                   5677777776665533334467888999***********9999999988843 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3   0.00031      0.46       1      29 [.       5      35 ..       5      57 .. 0.84
   2 ?   -1.2   0.0      0.56   8.3e+02     180     253 ..      47     124 ..      33     140 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00031
                CEEEE-SSHHHHHHHHHHHHTT--EEEE..E CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi..t 29
                +v V+G+  AG   A+ +a++Ga+v+ i   
  KKY14143.1  5 KVLVVGASIAGPTVAYWLAKAGASVTVIerF 35
                699**********************999551 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.56
                 HHHTT--EEEEEEEE--EEEGGGS-TTTSEEE---SS-B-SSSSSSSTCG--......--EEEEE--HHHHHHHHCTCCC CS
        GIDA 180 lkelgfellrlktgtppridkesidfskleeqsgdkegeefsylnkplnkeq......vecfltatneathkiikenlkk 253
                 ++  g +++r   g+++ +++++++++ +     +  g++f+ ++ + n +q      +e f   + +   ++ k+n+++
  KKY14143.1  47 IRTAGVTVMRKMPGMEAAVRSKTMEMEGISFVRDN--GRPFATIKATGNPDQqslvseYEIFRGDLAQILFDLTKDNENT 124
                 55566667777777777777777777766554444..4556666666554443333335555555555556666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.54
# Mc/sec: 2114.36
//
Query:       KKY14144.1  [L=467]
Description: putative mitogen-activated protein kinase kinase kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-08   32.8   0.1    1.6e-07   30.6   0.0    2.0  2  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0     9e-12   1.6e-07     111     167 ..      12      62 ..       4      91 .. 0.84
   2 ?   -1.0   0.1     0.041   7.3e+02      95     112 ..     216     234 ..     160     258 .. 0.62

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 9e-12
  Fungal_trans 111 alherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktia 167
                   + ++ + gva+r+a  +gLhr+    g      ++++eae+rrR+ww   + D + a
    KKY14144.1  12 RTVWTLTGVAIRIAEGMGLHRDGDTLG------VPPFEAEIRRRIWWQLQMHDFRAA 62 
                   56899**********************......9*************8766665555 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.041
  Fungal_trans  95 q.sLlllelyektssdral 112
                     s  lle y ++ sdr+l
    KKY14144.1 216 NvSVSLLEQYDIWQSDRRL 234
                   2356677777777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3237.94
//
Query:       KKY14145.1  [L=589]
Description: putative mfs siderophore iron [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-22   77.8  46.0    7.6e-14   51.4  22.1    2.6  3  MFS_1     Major Facilitator Superfamily
    4.7e-14   51.7  10.8    4.7e-14   51.7  10.8    2.2  2  TRI12     Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
       0.21   11.6   0.7        2.1    8.4   0.0    2.5  3  DUF5604   Domain of unknown function (DUF5604)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4  22.1   1.3e-17   7.6e-14       1     235 [.      92     334 ..      92     355 .. 0.78
   2 !   35.8  11.2   6.8e-13   4.1e-09       7     145 ..     361     501 ..     355     508 .. 0.90
   3 ?   -1.5   0.1      0.16   9.4e+02      63      77 ..     554     568 ..     531     582 .. 0.50

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 1.3e-17
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlg 98 
                 ++l++f++a+++sil+ +lp ++++++  ++s ++ ++++  + +a+  +pl+ + d +Gr   +l++ ++  lg l+l+ + ++l +++++ v+  +g
  KKY14145.1  92 IWLLYFVNAFQSSILSNLLP-FVTSAFE-THSLLNVIYVVSDAMSAAIYIPLSKILDVWGRAEGFLFMTICATLG-LVLMATcNGLATFCAAYVFYNIG 187
                 699*****************.*******.999999999998889999999*************************.444423599999*********** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplv 197
                  g+++  + +++ad ++ ++rg+a+++ s+ + + a  g+ ++  ++ +++Wr+ f  +ai++ +++    l+++ +   rk +++ +++   ++++++
  KKY14145.1 188 FGGMTYCVDVITADASKLKNRGLAYAFTSSPYIITAFAGAKAADDFYYNISWRWGFGCFAIIFPVVAA--PLYFVLKFNLRKAEKEGKLR---EEKSAI 281
                 ******************************************************************66..34443333333333333332...111111 PP

       MFS_1 198 p......awkallkdpvl.......w..illialllfffgfsglltllplylq 235
                        +++ +l +  +       w   ++ia+l+++f++ g++tl   +l 
  KKY14145.1 282 GvilfsaGLTVFLLPFDIadsapdgWstGYIIAMLVVGFVTLGIFTLYEAFLA 334
                 11222343333333333355556668998888888888888887777666654 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 6.8e-13
       MFS_1   7 lsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalg.lllllfa...sslwlllvlrvlqGlgag 100
                 +s++ ++++++++   + +d  ++ +e+g +  ++ ++++v+ l++G+l+ + Gr + +l +++ l++++ +l++ f    +s+w+l+ + ++ ++g++
  KKY14145.1 361 ISYYCWANYFTSFL-QVVND--LTLAEAGYVSNTFDVVSGVLLLFVGFLIRKTGRFKwLLYISVPLYIFSqGLMIYFRrpnQSVWYLVMCQIFISIGGS 456
                 67778888888888.67788..669*****************************9888************888888844579999************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllgglla 145
                 +++ + +++i + + +++ + +++ll++   +G +lg+ ++g++ 
  KKY14145.1 457 IFIIVEQIAILAAVDHQHVATVLALLYVVGTVGDALGATISGAIW 501
                 ******************************************984 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.16
       MFS_1  63 rvlllglllfalgll 77 
                 r+l +g+ ++al+++
  KKY14145.1 554 RMLAAGVGVMALAFI 568
                 233333333333311 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7  10.8   7.8e-18   4.7e-14      45     310 ..      84     348 ..      79     360 .. 0.83
   2 ?    0.6   3.9     0.023   1.4e+02     148     207 ..     396     453 ..     361     470 .. 0.69

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 7.8e-18
       TRI12  45 sfaafslnvvatyfvlqasasalpnilqdvgqs.ensslfstlwttgqavsilv...mgrltdrfgrrpfvilthilglvgaivgctatkfntllaamt 139
                 s+ a+ ln+   yfv    +s l n+l  v  + e +sl+  ++ + +a+s  +   + ++ d +gr    +   i   +g ++ +t++ + t+ aa  
  KKY14145.1  84 SLIAVFLNIWLLYFVNAFQSSILSNLLPFVTSAfETHSLLNVIYVVSDAMSAAIyipLSKILDVWGRAEGFLFMTICATLGLVLMATCNGLATFCAAYV 182
                 6677889********************9997654999***********99965522478999*****9988888899999******************* PP

       TRI12 140 llgvaagpagas.plfvgelmsnktkflgllivsipvvvtsglspylgqrlaiqgswrwifyiy.iitsaiavllivvwyyppsfaqlhgkkvrkreel 236
                 +  +  g       ++  +    k + l     s p ++t+ ++    + +  + swrw f  + ii   +a  l  v  +    a+  g   + ree 
  KKY14145.1 183 FYNIGFGGMTYCvDVITADASKLKNRGLAYAFTSSPYIITAFAGAKAADDFYYNISWRWGFGCFaIIFPVVAAPLYFVLKFNLRKAEKEG---KLREEK 278
                 ***998876655045555555667888888999****************************88735566777777666655444443333...346664 PP

       TRI12 237 akldwigiilvivgvslfllgvswggkpnspwnsakviglissglgslvvfalyevygkpvrpivppalfkdtr 310
                      ig+il ++g ++fll         + w +  +i ++  g  +l +f+lye +  pv p++  +++ d  
  KKY14145.1 279 ---SAIGVILFSAGLTVFLLPFDIADSAPDGWSTGYIIAMLVVGFVTLGIFTLYEAFLAPV-PMLNFSFLSDRT 348
                 ...469*****************************************************98.888888777744 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.023
       TRI12 148 agasplfvgelmsnktkflgllivsipvvvts.glspylgqrlaiqgswrwifyiyiitsa 207
                 +g   lfvg l+ +  +f  ll +s+p  + s gl  y+  r   q  w  ++   i +s 
  KKY14145.1 396 SGVLLLFVGFLIRKTGRFKWLLYISVPLYIFSqGLMIYF--RRPNQSVWYLVMC-QIFISI 453
                 466679*********************977661555555..6778888876653.222222 PP

>> DUF5604  Domain of unknown function (DUF5604)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00035       2.1      14      36 ..      10      32 ..       6      35 .. 0.90
   2 ?    0.3   0.0      0.12     7e+02      18      29 ..      77      88 ..      74      90 .. 0.88
   3 ?   -3.0   0.0       1.2   7.3e+03      21      33 ..     307     319 ..     305     320 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00035
     DUF5604 14 GkkrtktwhkGtliaiqtvGsGk 36
                G +rt t h Gt +a+ tv + k
  KKY14145.1 10 GFRRTETDHAGTSVAMTTVTADK 32
                678****************9877 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.12
     DUF5604 18 tktwhkGtliai 29
                t tw k +lia+
  KKY14145.1 77 TLTWSKKSLIAV 88
                78********97 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.2
     DUF5604  21 whkGtliaiqtvG 33 
                 w  G +ia+  vG
  KKY14145.1 307 WSTGYIIAMLVVG 319
                 9999999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 4050.87
//
Query:       KKY14146.1  [L=364]
Description: putative smp-30 gluconolaconase lre-like region [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-22   79.5   0.1    5.2e-22   78.6   0.1    1.4  1  SGL           SMP-30/Gluconolactonase/LRE-like region
    9.2e-06   25.7   0.0     0.0011   19.0   0.0    3.4  3  Str_synth     Strictosidine synthase
    7.1e-05   22.9   0.0    0.00055   20.1   0.0    2.4  3  Arylesterase  Arylesterase


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.1   8.7e-26   5.2e-22      49     223 ..     130     324 ..      66     339 .. 0.80

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 8.7e-26
         SGL  49 rkdgrlvvasksgl......alldlasgeletladeeedekpllrfNDgvv.dpdGrlwfGtmgdeeakgeev.....galyrldpd.gklervlddlt 134
                  +++++v++ +++l       l+d+++ + ++l+ ++ ++    ++ND+   ++ G lwf++ +++  +  ++      ++yr++p  g ++ v+dd+ 
  KKY14146.1 130 SAGQQIVFCDEGDLinpsqlTLVDPSTNTTKVLLNSFLGR-NFSSVNDVEQhHETGDLWFTDARYGYWQYFRPepvirPQVYRFEPLtGVVRAVADDFI 227
                 34478888888888777765777**************888.********86156899*******99988887788999*********999********* PP

         SGL 135 ipNGlawspdgktlYlaDsltrk............iwaydvdaeggklsnrrvfadlkkgegepDGlavDaeGnvwvAvwgggkvvrfdpdGklieeik 221
                  pNG+ +spd k+lY++D+  ++            i+++d+  +g++l+nr+vfa l+ g   pDG+ +D +Gnv++ +  g+++++++++G l++++ 
  KKY14146.1 228 APNGIEFSPDFKHLYVTDTGSHTfpnkdnltdpatIYRFDITPDGKRLQNRQVFAYLDSGF--PDGIHTDTDGNVYSSC--GDGIHVWNKHGVLLGKML 322
                 ****************6665444444455556677**********************9996..**************95..689999999999999887 PP

         SGL 222 lp 223
                 ++
  KKY14146.1 323 TD 324
                 76 PP

>> Str_synth  Strictosidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.4   8.3e+03      48      77 ..      32      60 ..      27      63 .. 0.68
   2 ?    2.4   0.0      0.03   1.8e+02      42      60 ..     152     170 ..     146     180 .. 0.82
   3 !   19.0   0.0   1.8e-07    0.0011       3      76 ..     177     246 ..     175     252 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.4
   Str_synth 48 vvkvlldkLyfanGialsedgsfvlvceta 77
                + k l  +  fan i l +d s  lv+e++
  KKY14146.1 32 EMKFLSYDDTFANSI-LGPDASATLVSELP 60
                556666666777776.77888888888765 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.03
   Str_synth  42 ydkstkvvkvlldkLyfan 60 
                  d+st  +kvll+   + n
  KKY14146.1 152 VDPSTNTTKVLLNSFLGRN 170
                 69**********9877665 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 1.8e-07
   Str_synth   3 ldvdeetgvlyftdsSskydrrqvllallegdktGrllkydkstkvvkvlldkLyfanGialsedgsfvlvcet 76 
                 ++ ++etg l+ftd+  +y   q++    e     +++++++ t vv+ ++d+   +nGi  s+d +++ v++t
  KKY14146.1 177 VEQHHETGDLWFTDA--RYGYWQYFRP--EPVIRPQVYRFEPLTGVVRAVADDFIAPNGIEFSPDFKHLYVTDT 246
                 555667888888887..4555555554..33344579********************************99887 PP

>> Arylesterase  Arylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.4   8.3e+03      61      72 ..      70      81 ..      68      85 .. 0.79
   2 !   20.1   0.0   9.2e-08   0.00055      45      74 ..     218     247 ..     193     251 .. 0.86
   3 ?   -1.6   0.0      0.53   3.1e+03      55      84 ..     288     314 ..     276     315 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.4
  Arylesterase 61 idadkkyiyvad 72
                  +++  +++y+++
    KKY14146.1 70 YNQATRSLYITS 81
                  777889999997 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 9.2e-08
  Arylesterase  45 evkvvasglssanGInidadkkyiyvadil 74 
                    v+ va+ ++++nGI +++d k +yv+d  
    KKY14146.1 218 VVRAVADDFIAPNGIEFSPDFKHLYVTDTG 247
                   5899***********************975 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.53
  Arylesterase  55 sanGInidadkkyiyvadilresihvmkkh 84 
                   ++ GI  d+d     v ++  + ihv +kh
    KKY14146.1 288 FPDGIHTDTDGN---VYSSCGDGIHVWNKH 314
                   789999998875...346666777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.33s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 2173.21
//
Query:       KKY14147.1  [L=528]
Description: putative mfs multidrug transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-40  137.5  26.4      5e-40  137.5  24.9    1.6  2  MFS_1     Major Facilitator Superfamily
    2.8e-12   45.8   9.1    2.9e-09   35.9   3.1    2.1  2  TRI12     Fungal trichothecene efflux pump (TRI12)
    3.6e-11   42.6   5.8    3.6e-11   42.6   5.8    3.3  4  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
       0.14   12.0   0.9        2.2    8.1   0.0    2.9  3  DUF4668   Domain of unknown function (DUF4668)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.5  24.9   1.1e-43     5e-40       5     353 .]      92     469 ..      88     469 .. 0.81
   2 ?   -1.5   0.0      0.21   9.4e+02     127     174 ..     484     505 ..     475     522 .. 0.52

  Alignments for each domain:
  == domain 1  score: 137.5 bits;  conditional E-value: 1.1e-43
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslw.lllvlrvlqGlgaga 101
                 a++s++++++++pa+   +aedlg+s + ++ l++l  +  + a l++ +ls+rfGrr+++ll+l++++++  +++ a s+ +  ++++r+l +++ + 
  KKY14147.1  92 ACMSTFTAAAIIPAYE-VIAEDLGVSLQRASYLTSLQIAILGGAPLFWKPLSNRFGRRPIFLLSLICSLIC-NIGC-AkSPDYaSMAACRALVAFFISP 187
                 7999***********9.9*****************************************************.5555.33666669************** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee...........k 189
                 ++++g +++++ f k+er++++g++++++ lG+ l p + g++a s+gWr++++il i+  + ++   l++p  p +r   +++  e           +
  KKY14147.1 188 AAAIGSVVVTETFFKRERAKYMGIWTLMITLGVPLSPFIFGFVANSVGWRWIYWILVIINGVQLL---LYIPLGPETRYIRRGVAHEgsdfkqeylnlS 283
                 ***************************************************************88...8999999999999999995444555554442 PP

       MFS_1 190 gtgpaplvp..........awkallkdpvlw....illialllfffgfsg...lltllplylqevlglsglllaglllallalvgailallagrlsdrl 271
                                      + l+          +ll a+ +++++++g   +++ lp ++ e ++++   ++gl +  l ++++i+  ++g+lsd +
  KKY14147.1 284 --------RvdptplkfydFVQPLFV----GrrlcVLLPAVSYAMIFLFGsvlITVELPQLFGEKFHFN-PAQLGLQFLGLIIGSVIGEQIGGFLSDFW 369
                 ........033332211322222222....1333323333333332333356699999*999*******.67888777777777777788899999883 PP

       MFS_1 272 gr............rrrlllallllllaalglallavt....ssavllll...vlvliGfglgfvfpsllalasdlappeeagtasglfntagslggal 351
                  +            + rl+l+++++ll+ +g++++ v      + ++ +    +++++G g  +v++ l+++a d +  ee++++  ++++++++ g++
  KKY14147.1 370 MNsktkklghrplpEYRLWLSYPGILLTIVGVIVFLVQtqfaGEGHWNISpviGIAIAGAGNQIVTTVLITYAIDCYV-EESASIGVFITFVRQVWGFI 467
                 3334444666777799****************9999999999777777777668899999999999999999999994.88888888888********* PP

       MFS_1 352 gp 353
                 gp
  KKY14147.1 468 GP 469
                 *8 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.21
       MFS_1 127 sagfslGailgpllggllasslgWravfyilaivsllafvlfllllpe 174
                 sag++                          +++++ +++l +l++  
  KKY14147.1 484 SAGVA--------------------------TGLMVGVGLLPILYIHF 505
                 33333..........................33333333334444433 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   3.1   6.4e-13   2.9e-09      41     214 ..      80     255 ..      70     262 .. 0.81
   2 !   13.4   0.4   4.3e-06     0.019     239     290 ..     389     438 ..     368     447 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 6.4e-13
       TRI12  41 rvvasfaafslnvvatyfvlqasasalpnilqdvgqsensslf.stlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaam 138
                 + +a +  ++   + + f   a   a   i +d+g s +++ + ++l       + l    l++rfgrrp+ +l+ i  l+  i  + +  + ++ a+ 
  KKY14147.1  80 KKIANLVLVAWHACMSTFTAAAIIPAYEVIAEDLGVSLQRASYlTSLQIAILGGAPLFWKPLSNRFGRRPIFLLSLICSLICNIGCAKSPDYASMAACR 178
                 56777777788888999999999999999******99776555055655556667899999********************998666678999999999 PP

       TRI12 139 tllgvaagpaga.splfvgelm..snktkflgllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavlliv 214
                 +l+     pa a   ++v e +   +++k++g+ ++ i    +  lsp++   +a    wrwi++i +i+  + +ll +
  KKY14147.1 179 ALVAFFISPAAAiGSVVVTETFfkRERAKYMGIWTLMITLG-VP-LSPFIFGFVANSVGWRWIYWILVIINGVQLLLYI 255
                 9999999999873456777765225789*****99988654.44.89**9999*****************999988865 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4.3e-06
       TRI12 239 ldwigiilvivgvslfllgvswggkpnspwnsakviglissglgslvvfaly 290
                 l + gi+l ivgv +fl+   + g+    wn + vig+  +g+g+ +v ++ 
  KKY14147.1 389 LSYPGILLTIVGVIVFLVQTQFAGE--GHWNISPVIGIAIAGAGNQIVTTVL 438
                 56779******************97..57***************99987665 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   5.8     8e-15   3.6e-11      64     198 ..     136     264 ..      91     281 .. 0.87
   2 ?   -1.6   0.1      0.21   9.3e+02     314     338 ..     301     323 ..     300     332 .. 0.80
   3 ?    0.0   0.2     0.065   2.9e+02      47      73 ..     343     369 ..     338     374 .. 0.85
   4 ?   -2.6   4.7       0.4   1.8e+03     330     429 ..     395     495 ..     387     514 .. 0.63

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 8e-15
                 HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  64 lfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgln 162
                 lf  +l++rfGR++++l + ++++i+++ +a ++    +  ++++R lv +++  a ++ ++ + E   k+ R + ++++ l+it+G  ++ ++  +++
  KKY14147.1 136 LFWKPLSNRFGRRPIFLLSLICSLICNIGCAKSP---DYASMAACRALVAFFISPAAAIGSVVVTETFFKRERAKYMGIWTLMITLGVPLSPFIFGFVA 231
                 78899*****************************...99****************************************************99988888 PP

                 TSS-TTHHHHHHHCCHHHHHHHHHHG.GGS---HHHH CS
    Sugar_tr 163 ktsnadgwrillglqlvpallllill.lflPESPryl 198
                 ++ +   wr+  ++ +++  ++l+l   + PE+ ry 
  KKY14147.1 232 NSVG---WRWIYWILVIINGVQLLLYiPLGPET-RYI 264
                 8777...***99999888887777653788999.775 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.21
                 S-SHHHHHHHHHHHHHHHHHHH..H CS
    Sugar_tr 314 fGRRtllllGaagmaicfvilgiva 338
                 +GRR ++ll a+ +a+ f++ +  +
  KKY14147.1 301 VGRRLCVLLPAVSYAMIFLFGS--V 323
                 69********999999999877..3 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.065
                 HHHHHHHTHHHHHHHHHHHHHHHHHHT CS
    Sugar_tr  47 lsglivsiflvGaiiGslfagllgdrf 73 
                 ++gl +  +++G++iG  ++g+l+d++
  KKY14147.1 343 QLGLQFLGLIIGSVIGEQIGGFLSDFW 369
                 5677777789*************9975 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 0.4
                 HHHHHH..HHHHTTSS......CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHH CS
    Sugar_tr 330 cfvilgivalllvaks...kaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfagl 425
                 +++i+g +++l++++      ++i  +++ia+  a  +  +++v+  ++ + + ++  s++  i++ v  ++ f+  + fp ++  +g + +  v +gl
  KKY14147.1 395 LLTIVGVIVFLVQTQFageGHWNISPVIGIAIAGA-GNQIVTTVLITYAIDCYVEESASIGVFITF-VRQVWGFIGPFWFPDMFTDVGVAASAGVATGL 491
                 55666633333333334634445555555555544.444566777788888888888888887765.56689999999999999999965555555555 PP

                 HHHH CS
    Sugar_tr 426 avlf 429
                 +v +
  KKY14147.1 492 MVGV 495
                 5533 PP

>> DUF4668  Domain of unknown function (DUF4668)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00048       2.2      87     138 ..      76     130 ..      73     137 .. 0.83
   2 ?   -0.6   0.1      0.24   1.1e+03      92     125 ..     176     209 ..     144     228 .. 0.73
   3 ?   -0.1   0.0      0.16     7e+02     105     159 ..     400     453 ..     384     455 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00048
     DUF4668  87 hPkwFklkywLlflllyvslvyslviiqlff...ktdqgislerlsqlfqlqlna 138
                  P w k+ ++ l+    +++++    i  ++   ++d g+sl+r s+l  lq+++
  KKY14147.1  76 WPSWKKIANLVLVAWHACMSTFTAAAIIPAYeviAEDLGVSLQRASYLTSLQIAI 130
                 699****9987777777777777777666656779*****************986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.24
     DUF4668  92 klkywLlflllyvslvyslviiqlffktdqgisl 125
                  ++ +  f++  +  + s+v+++ ffk+++   +
  KKY14147.1 176 ACRALVAFFISPAAAIGSVVVTETFFKRERAKYM 209
                 5667777888888999999999999988876555 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.16
     DUF4668 105 slvyslviiqlffktdqgislerlsqlfqlqlnailitlllaylfkeyelHsgpl 159
                  ++++lv +q++   + +is  ++   +    n i++t+l++y ++ y   s+++
  KKY14147.1 400 GVIVFLVQTQFAGEGHWNISP-VIGIAIAGAGNQIVTTVLITYAIDCYVEESASI 453
                 333334444433333333332.222233344578899999999999987776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 3343.45
//
Query:       KKY14148.1  [L=590]
Description: putative alpha-l-rhamnosidase a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-18   67.5   0.1    3.4e-16   59.4   0.0    2.1  2  Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin gly
    3.5e-11   42.7   0.1    8.1e-11   41.6   0.1    1.6  1  Bac_rhamnosid_C  Bacterial alpha-L-rhamnosidase C-terminal do
    4.5e-06   25.9   0.0    2.2e-05   23.6   0.0    2.0  2  GDE_C            Amylo-alpha-1,6-glucosidase
    0.00054   19.2   0.2    0.00083   18.6   0.2    1.2  1  DUF608           Glycosyl-hydrolase family 116, catalytic reg
      0.003   16.3   0.0     0.0046   15.7   0.0    1.2  1  Glyco_hydro_36   Glycosyl hydrolase 36 superfamily, catalytic
  ------ inclusion threshold ------
      0.016   14.0   0.0      0.024   13.5   0.0    1.1  1  Trehalase        Trehalase


Domain annotation for each model (and alignments):
>> Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0021       6.4       3      23 ..     104     124 ..     102     131 .. 0.85
   2 !   59.4   0.0   1.1e-19   3.4e-16      34     222 ..     155     341 ..     149     380 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0021
                      -EEEEES-HHHHHHHHHHHHH CS
  Bac_rhamnosid6H   3 tgsfecsdpllnrlhenvlws 23 
                      tg+fecsdp ln+ +  + ++
       KKY14148.1 104 TGWFECSDPELNAFWYDAAYT 124
                      8*************9888777 PP

  == domain 2  score: 59.4 bits;  conditional E-value: 1.1e-19
                      S-SSSS----BHHHHHHHHHHHHHHB--HHHHHHHHHHHHHH--TTS--BSBSS--T.T--B--TTTTTHHHHHHHHHHHHH--HHHHHHHHHH CS
  Bac_rhamnosid6H  34 DCPqrdErlgWtgdaqlfaptasylydveaflekwlrdladeqrengavptvaPevl.galsetaeWadaivivpwelyetygDkeilkkqYes 126
                      D+ +r  r +++gd ++ a+t   + +v++ ++++l+dl d qr++g +p    +++ g++ +    +  ++++  +l  ++gD e  +k+Y++
       KKY14148.1 155 DGAKR-DRDPYVGDLAVAARTLLLTHNVTEAVRNVLADLGDHQRDDGWIPP---ASInGYTLPLFDYPLWWIVCSYDLVLYTGDLEYARKYYSN 244
                      78889.8****************************************9986...44437888888888889*********************** PP

                      HHHHHHHHHHTSBT.......TB.--S-S--STT.....-SS----HHHHHHHHHHHHHHHHHHHHHHTTS..-.-HHHHHHHHHHHHHHHHHH CS
  Bac_rhamnosid6H 127 mkryldylkqrsdd......gleelskfqlgDWldpeardgaaktekalvataylvrslklvakiaellgkeed.akkyaalaeelkaafnkky 213
                      +++ ld+    + +      ++   ++ ++gD++        ++ +++   ++ +v +l+++a +a+ l+ e+d a +++++a +++aa+n+++
       KKY14148.1 245 IQQVLDKWYPSATNsassllSKGIGNTEGYGDYA-----FLPRNGPVT-YYNVLYVLALNNAASLAKFLDVENDdAFRWTERASNVTAAINQNL 332
                      *****99877777767776555577889999999.....333444444.467888999************88765******************* PP

                      B.-TTS-BT CS
  Bac_rhamnosid6H 214 ldsetgsva 222
                      +d++ g + 
       KKY14148.1 333 WDAQVGAYL 341
                      *99998553 PP

>> Bac_rhamnosid_C  Bacterial alpha-L-rhamnosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.1   2.7e-14   8.1e-11       1      67 [.     478     545 ..     478     550 .. 0.90

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 2.7e-14
                      --EECCGGGTEEEE----BTTB-EEEEEEEETTEEEEEEEEEE..TTEEEEEEEE-TT-EEEEEEE-SS CS
  Bac_rhamnosid_C   1 GirpsepGfkkiviaPkpggdlksvkasfeslyGkikvdWkre..dgkftlnvsvPanttaeVvLpgek 67 
                      G+ p++pGf+++ i+P  g+ ++++++ +++++G+i+v+W r     +f+++++ P  t  e+ +p  +
       KKY14148.1 478 GVMPTGPGFQTWSIKPITGN-IDWAQGVVPTPRGNISVQWVRHrdACQFKIRFDTPQDTAGEISVPLCE 545
                      899*************9888.*******************99955568899999*********999755 PP

>> GDE_C  Amylo-alpha-1,6-glucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   7.3e-09   2.2e-05      40     229 ..     170     342 ..     164     368 .. 0.82
   2 ?   -1.5   0.0      0.31   9.3e+02     354     379 ..     467     492 ..     459     495 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 7.3e-09
       GDE_C  40 IaLsGllLvtgrfeeAreilltFaktlr.hGliPNlldegqealyntvdaslwlieaiekYleyagdaeilrriypvlqeilqkyvqGtkykigldeed 137
                 +a + llL+ +  e  r++l   ++ +r +G iP +  +g   +    d +lw+i++ ++ + y+gd e +r+ y  +q++l+k+          +++ 
  KKY14148.1 170 VAARTLLLTHNVTEAVRNVLADLGDHQRdDGWIPPASINGY--TLPLFDYPLWWIVCSYDLVLYTGDLEYARKYYSNIQQVLDKWYPSAT-----NSAS 261
                 66677788888888889******9988868***98876544..344569**********************************9976665.....6788 PP

       GDE_C 138 glisagerlnqlTWmDakvkgepvtPRdGkaveinaLwyaaLkileelaekalge.akkssykelaekikesfekkFwdeaaaavakreilaD 229
                 +l+s+g  +n++     ++ + +  PR+G     n L   aL+ +++la+    e  ++ +++e a+++ +  +++ wd      a+ +++ D
  KKY14148.1 262 SLLSKGI-GNTE-----GYGDYAFLPRNGPVTYYNVLYVLALNNAASLAKFLDVEnDDAFRWTERASNVTAAINQNLWD------AQVGAYLD 342
                 9999999.4444.....67889999**********************9995433337889999************9999......44444444 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.31
       GDE_C 354 gslsElfdgdaellpkgciaQAWSva 379
                 g l+ l+++   ++p+g  +Q WS+ 
  KKY14148.1 467 GVLPALTNHVLGVMPTGPGFQTWSIK 492
                 678999999999************85 PP

>> DUF608  Glycosyl-hydrolase family 116, catalytic region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.2   2.8e-07   0.00083      99     212 ..     216     334 ..     172     354 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.8e-07
      DUF608  99 DlnlkfvLqvYRdyvitedkeflkemypkvkkvlekllefDkdkdglienegf.adqtYDa...wsvkGvsaycgglwlaaLeaaiemaellgdkkdae 193
                 D  l +++  Y  +  t d e++++ y  +++vl+k     +++ ++  ++g+ + + Y        +G+ +y + l++ aL+ a+++a++l+ ++d++
  KKY14148.1 216 DYPLWWIVCSYDLVLYTGDLEYARKYYSNIQQVLDKWYPSATNSASSLLSKGIgNTEGYGDyafLPRNGPVTYYNVLYVLALNNAASLAKFLDVENDDA 314
                 67777888889888889******************988755554444444433133445441225569************************9988776 PP

      DUF608 194 .eykellekakkvyekkLwn 212
                  +++e  ++   + +++Lw 
  KKY14148.1 315 fRWTERASNVTAAINQNLWD 334
                 25667777778888999996 PP

>> Glyco_hydro_36  Glycosyl hydrolase 36 superfamily, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.6e-06    0.0046     114     254 ..     207     345 ..     188     383 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.6e-06
  Glyco_hydro_36 114 ikGiedlssdDelWivltieayvketGdlsildevipysddkkatvyehlkkaldfsleklGkhglpli.graDWnDclnl.gkgesvfvsflly 206
                     i+G++    d +lW ++   + v  tGdl++ +    ys+   + v +    + + s++ l  +g+    g +D+     l  +g  ++  +l++
      KKY14148.1 207 INGYTLPLFDYPLWWIVCSYDLVLYTGDLEYAR--KYYSN--IQQVLDKWYPSATNSASSLLSKGIGNTeGYGDY---AFLpRNGPVTYYNVLYV 294
                     78888889999*******************999..34555..566788888888888888889999754155555...444145889999***** PP

  Glyco_hydro_36 207 lalkeflelakkkg.eeeeaekaekaadklreaiekyaWd..GewflRayt 254
                     lal++ + lak  + e+++a + ++ a+++  ai++++Wd     +l ++t
      KKY14148.1 295 LALNNAASLAKFLDvENDDAFRWTERASNVTAAINQNLWDaqVGAYLDSLT 345
                     ***********97725567889999***************44345666665 PP

>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   8.1e-06     0.024     320     362 ..     303     343 ..     289     383 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.1e-06
                 HHHCCCHCC-CCHHHHHHHHHHHHHHHHHHHCEETTTTEE--E CS
   Trehalase 320 iaefedklgdsetseefeekaekrkkaidkvLWneeagvylDY 362
                 +a+f d+   +  + ++ e+a++  +ai++ LW+++ g+ylD 
  KKY14148.1 303 LAKFLDVE--NDDAFRWTERASNVTAAINQNLWDAQVGAYLDS 343
                 33444433..567889*************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.52
# Mc/sec: 3419.91
//
Query:       KKY14215.1  [L=1195]
Description: putative c6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-64  217.6   0.0      3e-64  217.1   0.0    1.2  1  Beta_elim_lyase  Beta-eliminating lyase
    6.7e-25   87.6   0.0      1e-24   87.0   0.0    1.3  1  Fungal_trans     Fungal specific transcription factor domain
      0.003   16.9   0.0     0.0048   16.3   0.0    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
     0.0081   14.7   0.0      0.012   14.1   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.1   0.0   6.7e-68     3e-64       1     288 [.     820    1108 ..     820    1113 .. 0.96

  Alignments for each domain:
  == domain 1  score: 217.1 bits;  conditional E-value: 6.7e-68
                       E-S-GGG----HHHHHHHHCS----CCCT--HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH-.-TTEEEEEETT-HHHHSSTTHHH CS
  Beta_elim_lyase    1 DLlSDsvtkgteamsdaqaaamlGdesYgedktvnrLedavaelfgkeaalfvpqGtaAnsillkill.qrgeevivtepahihfdetgaia 91  
                       D++SD++t++t +m +a+ + +l d++Y ed+t+n++e ++a+l+gkeaal v +Gt++n+i+l+ ll q+ +++++++ +hi   e+g+ a
       KKY14215.1  820 DFRSDTITTPTLSMLRAIEQTTLMDDVYREDPTTNDFESYIAKLTGKEAALLVLSGTMGNQIALRSLLtQPPHSILCHHLGHILQSEAGGCA 911 
                       9***************************************************************77766*********************** PP

                       HCC--EEEEE-EBTTTBE-HHHHHHHS--S-T.TS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-C CS
  Beta_elim_lyase   92 elagvklrdlknkeaGkmdlekleaaikevga.heekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeiv 182 
                       +l++++++ +  ++  +++le+++a +   ++ h +++k+isl++T n   G+v +lee+r+++++a +++i++hlDgAR+++ ++s + ++
       KKY14215.1  912 TLSQAQVNGVIPSNGLYLTLEDIKANVILGDNiHLAPTKVISLENTLN---GTVTPLEEVRRISEFACSHDIKMHLDGARLWEVVASGAGSL 1000
                       **************88*********77775667***************...***************************************** PP

                       HHHHTTSSEEEEESSSTT--SS-EEEEE-HH....HHHHHHHHHHHHT---SSTHHHHH..HHHHHHHHS........STTHHHHHHHHHHH CS
  Beta_elim_lyase  183 kemfsyvDsvtmslkKdllanvGgvlafrddeledylaerveqrkylggglrqagvlaaleagiraleeg........laslerdhktaeql 266 
                        + ++y+D+  ++++K+l a++G+++++ ++     +++ +++rk +ggg+rq+g+la   a+ +a++e         + +l+++hk+a+  
       KKY14215.1 1001 PDFLQYFDTAQLCFSKGLAAPIGSIVVGTQK----VIDHCRWVRKSIGGGIRQSGILAG--AAKVAVDEAfgkgpngeDGKLRESHKRAKII 1086
                       *******************************....************************..9999999999999999999************ PP

                       HHHHHHCT--EEECCGTTCCEE CS
  Beta_elim_lyase  267 aeklelvrlaiprrvytqehld 288 
                             + + + r+v+t+++ +
       KKY14215.1 1087 EGLWTHLGGKVDRPVETNMVWL 1108
                       *999**********99998765 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0   2.3e-28     1e-24       4     265 ..     173     436 ..     170     438 .. 0.86

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 2.3e-28
  Fungal_trans   4 ffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlll 100
                   f ++++p  p+++   fl +    +++ +   s ll+ ai+  G+ f++  + +    +t+      af+ r + l+  df +++++++++q+Llll
    KKY14215.1 173 FVQYVYPYSPLINLREFLFSV-LRPDGRKGRVSLLLFQAIMFAGSAFVDFSHLRAVGFTTRRD-ARKAFFRRVRLLY--DFDYEPDRVTMVQALLLL 265
                   888899999999999999998.889999999999********************977777765.7777888888888..****************** PP

  Fungal_trans 101 elyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlwesdd 197
                     +    +d++  + ++gv +++a+++gLhr+ps+++      l+   +  ++R+ww+    D++ial ++rp+   +s+ ++p+ + dd ++ +  
    KKY14215.1 266 TNWYESPEDQKDTWHWMGVSISVAHTMGLHRDPSRSN------LSSGHKSLLKRIWWSLVLRDRLIALGMRRPTRVQNSDYDVPMLNLDD-FDTAPY 355
                   *************************************......99999**************************77**************.666666 PP

  Fungal_trans 198 aseetlvetk......lsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlq.......seklswveeleraldnW 265
                    +e+ +   +        ++++   +     +L++ +++++++ +si  + +   +        +   s ++  +++l+nW
    KKY14215.1 356 PDEIVQGIGNctmlrsQRQMTQLAVMCIESAKLCRPMNDVLSTQYSIQGTKSGGPNGstitlvpRTEPSDLQACDFELENW 436
                   6666555555699999899999999999999***************99888776666666666666666666666666666 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.1e-06    0.0048      14      60 ..     842     888 ..     831     902 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.1e-06
                      HTSS-SSSSHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTT CS
  DegT_DnrJ_EryC1  14 lksgwltsgpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgv 60 
                      l  + ++++p++++FE+ +a+ +g++ a+ v sGt ++++aLr l  
       KKY14215.1 842 LMDDVYREDPTTNDFESYIAKLTGKEAALLVLSGTMGNQIALRSLLT 888
                      55567888**********************************98755 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.8e-06     0.012      50     169 ..     849     981 ..     829     989 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.8e-06
                      --HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTEE........EEEESTSSHH...HHHHHHHTHHHTTCEEEEESTTSHHHHHH CS
  Cys_Met_Meta_PP  50 gnptrsvleeriaaLeggeaalavssGmaAiaaailallkaGde........ivvsddlYgg...tqrllkkvlkklgievkfvdtsdleelek 132
                      + pt++ +e+ ia+L g eaal+v sG+   + a+++ll++  +         ++++++ g+   +q++++ v++  g+  +  d +    l  
       KKY14215.1 849 EDPTTNDFESYIAKLTGKEAALLVLSGTMGNQIALRSLLTQPPHsilchhlgHILQSEAGGCatlSQAQVNGVIPSNGLYLTLEDIKANVILGD 942
                      68***************************************99844444444333333333321134455555555555555555555555555 PP

                      HCCT.TEEEEEEESS-TTTT-.---HHHHHHHHHHTT-E CS
  Cys_Met_Meta_PP 133 aike.ntklvylEtptnpllk.vvDiekiaklakkagvl 169
                       i+   tk++ lE   n ++  +  +++i+++a ++++ 
       KKY14215.1 943 NIHLaPTKVISLENTLNGTVTpLEEVRRISEFACSHDIK 981
                      555435566666555554433144555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.46
# Mc/sec: 7862.72
//
Query:       KKY14216.1  [L=860]
Description: putative conidiophore development protein hyma [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.5e-131  438.6   0.6   2.3e-131  438.0   0.6    1.3  1  Mo25      Mo25-like
    1.1e-22   79.7   0.0    2.5e-22   78.5   0.0    1.7  1  SWIB      SWIB/MDM2 domain


Domain annotation for each model (and alignments):
>> Mo25  Mo25-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  438.0   0.6  2.6e-135  2.3e-131       2     327 .]       4     359 ..       3     359 .. 0.97

  Alignments for each domain:
  == domain 1  score: 438.0 bits;  conditional E-value: 2.6e-135
        Mo25   2 lfkk...qktpaelvkslkellskldnskkkkkaeeelskqLkslkeillgdpdtepskeqvaqLlqeilkedllyklvknlkklefearkdvaqifsn 97 
                 +f++   + +p++++ks+k+llskl+++  ++k+ eel kq++++k i++g+p+ + s+eqv+qL++ i+++d+ly+l+++++ l+fearkd++ ifs+
  KKY14216.1   4 WFSRgraRPQPSDIAKSIKDLLSKLSEDTPNAKVDEELGKQMAQMKLIVQGTPEVDCSPEQVHQLVSCIIQDDILYDLARSIRLLPFEARKDAQIIFSH 102
                 6777767779****************999********************************************************************** PP

        Mo25  98 llrrkt..ksklpaveyl.etkpeilqlllegyeskeialhagsilrecikyealariiLyse.......................efwkffeyvensn 170
                 +lr+k+  +++  a++yl  ++pei+  l++gye++++a+++g+ilr++++++++a+++Ly++                        fw+ff+y++ s+
  KKY14216.1 103 ILRFKPtnSNDRSAISYLvYNRPEIVVELCRGYEHPQSAMPCGTILRQALQHDVIAALVLYDQsrpgesavqirevdvsqqqtgdgIFWQFFRYISAST 201
                 ****87224455599**999*****************************************************************99************ PP

        Mo25 171 feiasdafetlkelLtkhkklvaefleenfdeffk.yinkllqsenYVtkrqslkLLgelLldrsnlkvmtrYvsspenLklimnlLkdkskniqfeaF 268
                 fe+++daf+t++e+Ltkhk++va++l  nfd ff+ y++ l+qse+YVtkrqs+kLLge+Lldr+n++vmt+Yv+++e+Lkl+mnlL+d++k++q+eaF
  KKY14216.1 202 FEVSADAFTTFREILTKHKQMVAQYLFVNFDLFFNrYNTILVQSESYVTKRQSIKLLGEILLDRANYNVMTAYVDRGEHLKLCMNLLRDDRKMVQYEAF 300
                 **********************************8688888********************************************************** PP

        Mo25 269 hvFKvfVanpnKskpvqkiLikNrdkLlkfledfqtdreeDeqfkdEkeflikqieeLp 327
                 hvFKvfVanpnKs +vq+iLi+Nrd+Llkfl++f +dr++D+qf+dEk+fl++qie Lp
  KKY14216.1 301 HVFKVFVANPNKSVAVQRILINNRDRLLKFLPKFLEDRTDDDQFTDEKSFLVRQIELLP 359
                 ********************************************************985 PP

>> SWIB  SWIB/MDM2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.0   2.8e-26   2.5e-22       1      73 [.     634     705 ..     634     706 .. 0.96

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 2.8e-26
        SWIB   1 kpvklspeLaellgekelsrpevvkklweYIkennLqdpedkreilcDekLkklfggkdrvkffempkllkkH 73 
                 +++ lsp+Lae+l++ke  r+ +v  +w+Y+++++Lq++e+kr i+cD++Lk++fg  d++ f+++p+ ++ H
  KKY14216.1 634 ERYSLSPALAEVLDTKEEDRAGIVLGIWDYVRAMGLQEDEEKRAIRCDDRLKAVFGA-DTIFFPQIPERISSH 705
                 589****************************************************65.8*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (860 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.48
# Mc/sec: 5384.82
//
Query:       KKY14217.1  [L=551]
Description: putative s-adenosylmethionine-dependent methyltransferase superfamily domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-11   42.6   0.8      5e-10   40.0   0.0    2.7  3  Methyltransf_25  Methyltransferase domain
    4.3e-10   39.5   1.1    5.1e-10   39.2   0.1    1.6  2  PrmA             Ribosomal protein L11 methyltransferase (Prm
      1e-08   35.7   0.0    4.9e-08   33.5   0.0    2.1  2  Methyltransf_11  Methyltransferase domain
    4.7e-08   33.0   0.2    1.1e-07   31.7   0.0    1.7  1  Methyltransf_31  Methyltransferase domain
    1.3e-06   28.1   0.2      6e-06   25.9   0.1    2.0  2  MTS              Methyltransferase small domain
    4.2e-06   26.8   0.0    1.1e-05   25.4   0.0    1.6  1  Methyltransf_18  Methyltransferase domain
    1.6e-05   24.8   0.0    4.9e-05   23.2   0.0    1.9  1  Methyltransf_23  Methyltransferase domain
    0.00073   18.9   0.0     0.0013   18.1   0.0    1.3  1  CMAS             Mycolic acid cyclopropane synthetase
    0.00083   18.4   0.1     0.0016   17.4   0.1    1.5  1  Methyltransf_9   Protein of unknown function (DUF1698)
     0.0014   18.4   0.1     0.0035   17.1   0.1    1.6  1  Methyltransf_16  Lysine methyltransferase
      0.004   16.9   0.1     0.0074   16.0   0.1    1.3  1  Met_10           Met-10+ like-protein
     0.0062   16.3   0.0      0.011   15.5   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0087   15.5   0.4      0.019   14.4   0.0    1.7  2  TehB             Tellurite resistance protein TehB
  ------ inclusion threshold ------
      0.013   16.3   0.1      0.046   14.5   0.0    2.1  1  Methyltransf_12  Methyltransferase domain
      0.022   14.2   0.0      0.032   13.7   0.0    1.2  1  PTPA             Phosphotyrosyl phosphate activator (PTPA) pr
      0.026   14.5   2.7      0.053   13.5   2.7    1.4  1  FlxA             FlxA-like protein
      0.037   15.0   0.0        0.1   13.6   0.0    1.8  1  Methyltransf_24  Methyltransferase domain
      0.037   13.4   0.0      0.067   12.5   0.0    1.4  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.058   13.7   0.5      0.058   13.7   0.5    2.2  1  zf-C2H2_2        C2H2 type zinc-finger (2 copies)
       0.07   12.8   0.4       0.71    9.5   0.0    2.3  2  Cons_hypoth95    Conserved hypothetical protein 95
      0.088   13.4   0.8       0.31   11.6   0.0    2.1  2  PRESAN           Plasmodium RESA N-terminal
      0.098   11.9   0.0       0.18   11.1   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain
       0.17   11.3   0.3        0.4   10.1   0.3    1.6  1  Methyltransf_4   Putative methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       6.6   5.2e+03      61      85 ..      43      68 ..      33      79 .. 0.57
   2 ?   -1.6   0.1       6.1   4.7e+03      28      51 ..     127     148 ..     125     166 .. 0.67
   3 !   40.0   0.0   6.4e-13     5e-10       1      97 []     230     327 ..     230     327 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 6.6
                     STTTEEEEEEESTGGG..SSHHHHHHH CS
  Methyltransf_25 61 edgsfDlvvssgalhh..lsdedleka 85
                      ++ fD v ++  lh+   ++ dl k+
       KKY14217.1 43 CEENFDNVSAM-LLHCkeKNNFDLMKT 68
                     56778888884.455411223344444 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 6.1
                      ESSHHHHHHHHHHHHHTTTTEEEE CS
  Methyltransf_25  28 Diseemleaareraeeeglnvefv 51 
                      D s +++e+ r++++e  l+v+f 
       KKY14217.1 127 DDSTAQVEELRQQLQE--LKVQFA 148
                      6688889999999965..455553 PP

  == domain 3  score: 40.0 bits;  conditional E-value: 6.4e-13
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEEST.GGGSSHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssga.lhhlsdedlekalkeiar 91 
                      vLd+GcGtG l++ +ak+ g++ v++vD s + +e+a+++++e+gl   +++++g++e++ ++  ++D++vs  + + ++ ++  + ++     
       KKY14217.1 230 VLDVGCGTGILSMFCAKA-GAKLVIAVDNS-NIIEKANANVAENGLsdIITCLRGKIEEVTLPVPQVDIIVSEWMgYALFYEAMFDSVIWARDH 321
                      9*****************.68*******87.799************999999**********99********6665777777777888877777 PP

                      HEEEEE CS
  Methyltransf_25  92 vLkpgG 97 
                       Lkp+G
       KKY14217.1 322 YLKPDG 327
                      888777 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       7.8   6.1e+03      70      95 ..     128     153 ..     122     161 .. 0.66
   2 !   39.2   0.1   6.5e-13   5.1e-10     161     233 ..     226     300 ..     218     330 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 7.8
        PrmA  70 eliaqlkeselglekgkvkveeveee 95 
                 + +aq++e  ++l++ kv++ e +e+
  KKY14217.1 128 DSTAQVEELRQQLQELKVQFAEYQEQ 153
                 45566666666666666666665554 PP

  == domain 2  score: 39.2 bits;  conditional E-value: 6.5e-13
        PrmA 161 egeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklevalseellk....eekadvivaN 233
                 +++ vlDvG+G+GiL++  ak gak v+avD  ++ ++ a++N++ N++++ ++  l +++ +      ++d+iv+ 
  KKY14217.1 226 QNKVVLDVGCGTGILSMFCAKAGAKLVIAVDNSNI-IEKANANVAENGLSDIITC-LRGKIEEvtlpVPQVDIIVSE 300
                 56789**************************9886.9**************9965.433333233344789999975 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       6.8   5.3e+03      59      89 ..      44      77 ..      30      81 .. 0.68
   2 !   33.5   0.0   6.3e-11   4.9e-08       1      95 [.     231     330 ..     231     330 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 6.8
                     TT-EEEEEEES-CCC-C...CHHHHHHHHHHHEE CS
  Methyltransf_11 59 dnsfDlvvssevlhhve...dpekalkeiaRvLk 89
                     ++ fD v +    +  +   d++k+ ke++  L+
       KKY14217.1 44 EENFDNVSAMLLHCKEKnnfDLMKTRKELVNYLR 77
                     6778877666544444244577777777777776 PP

  == domain 2  score: 33.5 bits;  conditional E-value: 6.3e-11
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES...-CCC-CCHHHHHHHHHHHE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvsse...vlhhvedpekalkeiaRvL 88 
                      LdvGcGtG+l+  +ak+g + v++vD + + ++ a++++ e+gl   ++++++ +e++ ++  ++D++vs +   +l++ +  ++++      L
       KKY14217.1 231 LDVGCGTGILSMFCAKAGaKLVIAVD-NSNIIEKANANVAENGLsdIITCLRGKIEEVTLPVPQVDIIVSEWmgyALFYEAMFDSVIWARDHYL 323
                      8*****************999*****.788899**********999999********999999*******996666777799999999999999 PP

                      EEEEEEE CS
  Methyltransf_11  89 kpgGllv 95 
                      kp+Gllv
       KKY14217.1 324 KPDGLLV 330
                      9999986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.4e-10   1.1e-07       3     113 ..     226     335 ..     224     380 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.4e-10
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkae.vvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsn...evlnaladpd 91 
                      ++++vlD+GCGtG l+   a ++g  a+ v+ +D+s + ie+A++n +++gl+  ++  +g iee    l   ++D+i+s     +l + a  d
       KKY14217.1 226 QNKVVLDVGCGTGILSMFCA-KAG--AKlVIAVDNS-NIIEKANANVAENGLSdIITCLRGKIEEVT--LPVPQVDIIVSEwmgYALFYEAMFD 313
                      6899****************.655..4559****87.79*************96678888*****66..44457******98887777777888 PP

  Methyltransf_31  92 kileeiervlkpggilliedpr 113
                      +++     +lkp+g l+ ++ +
       KKY14217.1 314 SVIWARDHYLKPDGLLVPSHTS 335
                      8888888999999999977766 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.8   1.4e+03      10      29 ..      41      60 ..      36      67 .. 0.82
   2 !   25.9   0.1   7.7e-09     6e-06      31     103 ..     226     299 ..     217     300 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.8
                STTTTS--HHHHHHHHHCHC CS
         MTS 10 vFskdklDkGsklLletlpk 29
                 F+++++D+ s++Ll++ +k
  KKY14217.1 41 LFCEENFDNVSAMLLHCKEK 60
                79************987555 PP

  == domain 2  score: 25.9 bits;  conditional E-value: 7.7e-09
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTST.TS-EEEEEE CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeve.ekkfdlivs 103
                 +++ vlD+GcG+G+l++ +ak+  ++ v +vd + + +e a++n+++n+l+  ++++   + e +    ++d+ivs
  KKY14217.1 226 QNKVVLDVGCGTGILSMFCAKAGAKL-VIAVD-NSNIIEKANANVAENGLSdiITCLRGKIEEVTLpVPQVDIIVS 299
                 35679****************99884.44555.6678*************98766655555442221457777765 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.4e-08   1.1e-05      14      97 ..     226     308 ..     221     324 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.4e-08
  Methyltransf_18  14 kgsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGleklkeee.vdtvviaGmGgelil 97 
                      ++++v+D+G+  g+l+++ +k g ak via+D  ++ +eka++n++++gl+d i++  ++  e+  +   vd++v   mG  l  
       KKY14217.1 226 QNKVVLDVGCGTGILSMFCAKAG-AKLVIAVDN-SNIIEKANANVAENGLSDIITCLRGKIEEVTLPVPqVDIIVSEWMGYALFY 308
                      6889**************99765.78******5.689*************99998888887666666655999999999988765 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   6.3e-08   4.9e-05      20      60 ..     224     264 ..     202     335 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 6.3e-08
  Methyltransf_23  20 lraggrvLdiGcGtGillevlrengfsvt.gvDlspeaveia 60 
                      l++++ vLd+GcGtGil+  +++ g++++ +vD s + +e+a
       KKY14217.1 224 LFQNKVVLDVGCGTGILSMFCAKAGAKLViAVDNSNI-IEKA 264
                      799***********************7555***9965.5554 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.7e-06    0.0013      51     163 ..     215     330 ..     194     345 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.7e-06
                 HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG---...--SEEEEES-GGGT.SGGGH CS
        CMAS  51 ldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedlde...kvdrvvsvgafehv.gkeny 145
                 +d i++  +l + + +Ld+GcG G l +  ++  ++k v     ++  ++a+++v+e +l++  + +  + e++     +vd +vs  +  ++  ++ +
  KKY14217.1 215 RDFIYDNKHLFQNKVVLDVGCGTGILSMFCAKA-GAKLVIAVDNSNIIEKANANVAENGLSDIITCLRGKIEEVTLpvpQVDIIVSEWMGYALfYEAMF 312
                 68899999**********************999.99988777788999********************9999999877788999987665444144456 PP

                 HHHHHHHHHHS-TT-EEE CS
        CMAS 146 dtffkklkkllkedGlll 163
                 d  + + ++ lk+dGll+
  KKY14217.1 313 DSVIWARDHYLKPDGLLV 330
                 666667778888888765 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   2.1e-06    0.0016     108     149 ..     221     260 ..     126     331 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.1e-06
                     GGGS.--TT-EEEEET-TTSHHHHHHHHCT-SEEEEE---HH CS
  Methyltransf_9 108 lphlsdlkgrtildvGcgnGyhlwrmvgegaklvvGidPsel 149
                     ++hl  ++++++ldvGcg+G   +  + +gaklv+ +d s++
      KKY14217.1 221 NKHL--FQNKVVLDVGCGTGILSMFCAKAGAKLVIAVDNSNI 260
                     3555..99*************999999***********9876 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   4.6e-06    0.0035      40      99 ..     220     276 ..     197     300 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.6e-06
  Methyltransf_16  40 lganelsklsvlELGsGtGlvGlavaellpeakviltDleellellkknielnknalksk 99 
                      ++++ ++++ vl++G GtG+  +  a++ +   vi  D ++++e  + n++ n+  l++ 
       KKY14217.1 220 DNKHLFQNKVVLDVGCGTGILSMFCAKA-GAKLVIAVDNSNIIEKANANVAENG--LSDI 276
                      456778999*****************99.66667778**************976..6554 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   9.5e-06    0.0074     100     174 ..     226     299 ..     220     318 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9.5e-06
                 TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---.TT-EEEEEE CS
      Met_10 100 egevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevir.eqladrvvm 174
                 +++vV+dv  G G +++ +ak + ak v+a+d n + ++  + n++ N ++++++ + +  +ev+    ++d +v 
  KKY14217.1 226 QNKVVLDVGCGTGILSMFCAK-AGAKLVIAVD-NSNIIEKANANVAENGLSDIITCLRGKIEEVTLpVPQVDIIVS 299
                 799*****************9.89999****9.8899999******************999999875556666665 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.4e-05     0.011      70     128 ..     223     278 ..     188     299 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-05
                 T--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEE CS
        PCMT  70 elkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenviv 128
                 +l + + vL+vG+G+G+l+   a+  g+k  v++++ + +++e+a++n+ +++l+++i+
  KKY14217.1 223 HLFQNKVVLDVGCGTGILSMFCAK-AGAKL-VIAVDNS-NIIEKANANVAENGLSDIIT 278
                 4677888**********9877766.46666.99**986.699**********9998775 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       5.5   4.3e+03      66      91 ..      52      77 ..      44      96 .. 0.57
   2 !   14.4   0.0   2.4e-05     0.019      28     102 ..     224     300 ..     200     328 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.5
                HHHHHHHHHTT-TTEEEEE--GGG-- CS
        TehB 66 afleeikekenlknistalydineak 91
                a+l + kek+n++ ++t+   +n ++
  KKY14217.1 52 AMLLHCKEKNNFDLMKTRKELVNYLR 77
                55667788888888887766665433 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.4e-05
                 CS-S-EEEEES-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-TTEEEEE-.-GGG----.S-EEEEEEE CS
        TehB  28 ivkpgkvldlgcgqgrnslylsllgydvtawdknensiafleeikekenlknistaly.dineakld.erydfilst 102
                 + +   vld+gcg g  s++ +  g ++     n+n i+  +     + l++i t l  +i+e++l   + d+i+s 
  KKY14217.1 224 LFQNKVVLDVGCGTGILSMFCAKAGAKLVIAVDNSNIIEKANANVAENGLSDIITCLRgKIEEVTLPvPQVDIIVSE 300
                 4555668******************9977777789999999999999999998887653788888852477888775 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   5.9e-05     0.046       1      97 [.     231     327 ..     231     329 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.9e-05
  Methyltransf_12   1 LeiGcGtGsllralleklpdieyt.gvDispsaiedakeklakrennn.nnnvelealdlldldggssfDlvv...asnvlhhlkdirevldni 89 
                      L++GcGtG l++ ++++  +++++ +vD s   ie+a +  a+++  +  ++++ + +++    +  ++D++v   +  +l + +  ++v+   
       KKY14217.1 231 LDVGCGTGILSMFCAKA--GAKLViAVDNSN-IIEKANANVAENGLSDiITCLRGKIEEVTLPVP--QVDIIVsewMGYALFYEAMFDSVIWAR 319
                      8****************..888887999775.455777777777765513555555555443333..777777444444444435555555555 PP

  Methyltransf_12  90 rklLkpgG 97 
                       + Lkp+G
       KKY14217.1 320 DHYLKPDG 327
                      56666666 PP

>> PTPA  Phosphotyrosyl phosphate activator (PTPA) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.1e-05     0.032      17     134 ..     123     235 ..     111     269 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.1e-05
                 CHHHHHHHHHHHHHHHHHT........T-SS-HHHHHHH.HHHHHHCCCTS---SS--SSS-THHHHHHHHHHHHHHHHHHHHS-GGGGGG......HH CS
        PTPA  17 Skayadilefisrlneavkgkkleeeeeasesvekllkl.LdeleelideippeeqpsRfGnkafrtwhdrleeraeelleellpeelkkaelekaaie 114
                 S + +d ++ +++l +++++ k+++ e  +e+v+k+l+  L++ e++   + p++qp R  + a+r++    + + ++++e++l++++++      a  
  KKY14217.1 123 SGSTDDSTAQVEELRQQLQELKVQFAEY-QEQVSKILQSqLESKESISPAVKPDPQPPRTSDHAVREFDYFDSYSYNSIHETMLKDTVRTD-----AYR 215
                 6777888999*************98655.77788777655****************************98888999999999998887654.....344 PP

                 HHHHHHHTTT-BTTTTEE-H CS
        PTPA 115 elkaYlkesfGnatrlDYGt 134
                    +  k+ f n++ lD G 
  KKY14217.1 216 DFIYDNKHLFQNKVVLDVGC 235
                 44444555566666666554 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   2.7   6.8e-05     0.053      33      83 ..     114     165 ..     110     174 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.8e-05
        FlxA  33 Lkelses.deltkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaqekqqse 83 
                 L++l ++  + ++++  +q +++ +Q+q l+ Q a  q+q ++  q++ +s+
  KKY14217.1 114 LDDLDDEpISGSTDDSTAQVEELRQQLQELKVQFAEYQEQVSKILQSQLESK 165
                 667777775677788999*******************999877666655554 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   0.00013       0.1       3      74 ..     233     298 ..     231     330 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00013
  Methyltransf_24   3 iGvysGvstlwllralrrngagrlvavdhdpgaeeaaalareaglddrvrlikadseealaslaagsiDllf 74 
                      +G+  G  +++++    ++ga  ++avd+    e+a a+++e+gl+d+++ ++++ ee+   +   ++D+++
       KKY14217.1 233 VGCGTGILSMFCA----KAGAKLVIAVDNSNIIEKANANVAENGLSDIITCLRGKIEEVTLPVP--QVDIIV 298
                      6766777777777....4455579*****99989999999999**************9854444..566665 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.6e-05     0.067      33     118 ..     212     295 ..     192     342 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.6e-05
                      HHHHHHHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSST.EEEEE--TTT-TTS-T-EE CS
  Ubie_methyltran  33 rlWkkfveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkin.ieflqanaeeLpfeddsfD 118
                      + +++f+ + +   + + vlDv +Gtg l++  + ++g+  k+v++  n+n+++ +++ + e+g ++ i  l ++ ee+       D
       KKY14217.1 212 DAYRDFIYDNKHLFQNKVVLDVGCGTGILSMFCA-KAGA--KLVIAVDNSNIIEKANANVAENGLSDiITCLRGKIEEVTLPVPQVD 295
                      578999*9999999*************8887544.4454..4444445899*************99625778887777665555555 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.5   7.4e-05     0.058       2      46 ..      40      79 ..      36      85 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.4e-05
   zf-C2H2_2  2 Clfcekkskeveellehmskkhgffipereylvdleglleylrek 46
                Clfce+++++v+++l h ++k +f++      +++++l++ylr++
  KKY14217.1 40 CLFCEENFDNVSAMLLHCKEKNNFDLM-----KTRKELVNYLRSE 79
                999999999999999999999999887.....6677777777765 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.53   4.1e+02      71     111 ..     127     165 ..     125     175 .. 0.78
   2 ?    9.5   0.0   0.00091      0.71      39      98 ..     224     282 ..     206     300 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.53
                    ES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS CS
  Cons_hypoth95  71 ekdkeavkilkenleelkleeetaelkedaleallklakkk 111
                    + + + v+ l+++l+elk++  +ae++e+ ++ l+++ + k
     KKY14217.1 127 DDSTAQVEELRQQLQELKVQ--FAEYQEQVSKILQSQLESK 165
                    5567778899999**99966..7888888888887776554 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00091
                    CHCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEE CS
  Cons_hypoth95  39 eiegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeetaelke 98 
                     ++++ vLD+ +G+G l++ ++  gak +++v++++  ++  ++n++e +l++ ++ l+ 
     KKY14217.1 224 LFQNKVVLDVGCGTGILSMFCAKAGAKLVIAVDNSN-IIEKANANVAENGLSDIITCLRG 282
                    389999**************************9875.56777888888888875555544 PP

>> PRESAN  Plasmodium RESA N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1         3   2.4e+03      31      50 ..      56      77 ..      48      88 .. 0.63
   2 ?   11.6   0.0    0.0004      0.31      36     116 ..     145     227 ..     136     230 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 3
                HHHHHHHHHHHH..HHHHHHHH CS
      PRESAN 31 mknekkkyknmi..kkLsnyle 50
                ++ ek++++ m+  k+L nyl+
  KKY14217.1 56 HCKEKNNFDLMKtrKELVNYLR 77
                5566777777662234555544 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.0004
                 HHHHHHHHHHHHHHH.HHHHHTT--HHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SEEEHHHHHHHHHHHHHHHHH CS
      PRESAN  36 kkyknmikkLsnyle.elakkynipeeyk.kklwkeckneitkelkklekeynknfynllkkkklsidefkefinsyrklwkk 116
                  ++ + +++ s+ l+ +l +k  i+  +k + +     +   +e+ ++++++++++++ + k+++ +d +++fi+++++l+++
  KKY14217.1 145 VQFAEYQEQVSKILQsQLESKESISPAVKpDPQPPRTSDHAVREFDYFDSYSYNSIHETMLKDTVRTDAYRDFIYDNKHLFQN 227
                 5566666666666431466666666666666666677778889***********************************99876 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00023      0.18      60     135 ..     224     301 ..     192     306 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00023
                     GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS.-----TTEEEEES-TTTS---..--SEEEEES CS
  Methyltransf_2  60 leglkslvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehl.sageeervefvgGdffkdslP..eaDaillkr 135
                     l + k+++DvG GtG l   +++a  ++ vi  D ++++e+A+  + + g+++ ++   G + + +lP  + D+i+ ++
      KKY14217.1 224 LFQNKVVLDVGCGTGILSMFCAKAGAKL-VIAVDNSNIIEKANANVaENGLSDIITCLRGKIEEVTLPvpQVDIIVSEW 301
                     66678899*********99999986665.6778************989999**********998766544889887666 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3   0.00051       0.4       1      53 [.     226     276 ..     226     289 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00051
                     S-EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSE CS
  Methyltransf_4   1 kapvvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNl 53 
                     +++vvl++GcG G + +  Ak+ + k++++++  +++++k+++++++++l+ +
      KKY14217.1 226 QNKVVLDVGCGTGILSMFCAKAGA-KLVIAVDN-SNIIEKANANVAENGLSDI 276
                     5789*********98888888765.789***96.6899*****9999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1137  (0.0634168); expected 358.6 (0.02)
Passed bias filter:                      863  (0.0481343); expected 358.6 (0.02)
Passed Vit filter:                       160  (0.00892409); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.50
# Mc/sec: 3344.02
//
Query:       KKY14218.1  [L=536]
Description: putative udp-galactopyranose mutase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.5e-09   35.4   0.1    2.1e-08   34.3   0.1    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      1e-06   28.3   0.0    2.3e-06   27.2   0.0    1.5  1  Amino_oxidase  Flavin containing amine oxidoreductase
     0.0036   16.6   0.0     0.0077   15.5   0.0    1.5  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
     0.0038   16.5   0.3       0.12   11.6   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0075   15.5   0.3      0.017   14.4   0.0    1.6  2  Thi4           Thi4 family
  ------ inclusion threshold ------
      0.015   14.6   0.1      0.024   13.9   0.1    1.3  1  FAD_binding_3  FAD binding domain
      0.031   13.6   0.0      0.046   13.1   0.0    1.2  1  FAD_oxidored   FAD dependent oxidoreductase
      0.092   12.3   0.0       0.14   11.7   0.0    1.4  1  DAO            FAD dependent oxidoreductase
       0.19   10.4   0.0       0.29    9.8   0.0    1.2  1  HI0933_like    HI0933-like protein
       0.43    9.6   1.5        1.1    8.3   0.1    2.1  3  Lycopene_cycl  Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.1   1.2e-11   2.1e-08       1      59 [.      12      70 ..      12      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.2e-11
                   EE--SHHHHHHHHHHHC.CTEEEEEE-SSSSSSGGG-EECE.TTCEECTS---EEETTHHH CS
  NAD_binding_8  1 IvGaGlsGlvaAylLak.agfdvlllekrdrlGGraasyev.pgvrvdygahifhgsgyyp 59
                   +vGaG +Gl aA +L++ + ++ l+l++++ +GG a++    +g+ +d+g h++++ + y+
     KKY14218.1 12 VVGAGPTGLGAAKRLHQvDTASWLILDSNPVPGGLASTDVTkEGFLYDVGGHVIFS-H-YK 70
                   8****************5588******************99567**********99.3.44 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.3e-09   2.3e-06       2     266 ..      18     275 ..      17     294 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.3e-09
                    HHHHHHHHHHHTT.EEEEEEESSSSSBTTS-EEEET.TEEEESS--EEETTTHHHHHHHHHTTCCCCEEEESCCGCEEEEETTEECCTTEECHHHH CS
  Amino_oxidase   2 aGLaaArqLlsaG.fdVtvlEardrvGGRirtvrsd.GylielGamwftgagnpllellkelgledslslpdpgapkrvlskggrefpgdlspvpa 95 
                    +GL aA++L++    + ++l +++ +GG ++t+  + G+l+++G+++++ ++  +   ++e  l++++ +  ++             +  + +  +
     KKY14218.1  18 TGLGAAKRLHQVDtASWLILDSNPVPGGLASTDVTKeGFLYDVGGHVIFSHYKYFDDCIDE-ALPNDDDWYTHQ-------------RISYVRCKG 99 
                    7*************************************************55555555555.666655544444.............222333333 PP

                    HHHHHHHHHHHH....CHHHH.HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTSTT...TTC CS
  Amino_oxidase  96 ewealleqgals....aells.leeklrlgleallqktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasglfagdp...sel 183
                    +w  + +q ++s     ++++ + +++ ++lea           + k+++e++ +  + +  d      +++p +++   +    + + +   + +
     KKY14218.1 100 LWVPYPFQNNISmlpkEDQVKcMDGMIDAALEARV------AGTKPKDFDEWIVRMMGTGIAD-----LFMRPYNYKVWAVPTTKMQCQWlgeRVA 184
                    33333332222222122333203555555555555......9**********99999999988.....9999*999************99998888 PP

                    BHHHHTCCCCHHHHHTSCCCEE........TTHTHHHHHHHHHTTTTEEEETSEEEEEEEE.ETTCEEEEETTSTEEEESEEEE-S-HHHHH CS
  Amino_oxidase 184 saklalpllwelegfggslllp........rgGlsqlpealaeelrgldirlntrVkeikr.egdgvtvtledgevveaDaVvvTvplgvlk 266
                      +l+  ++    ++ ++ + p        r+G + +  a+a++l++ + r++++ + +++ ++d+ +v l dg+++++++ v+T+ ++ l 
     KKY14218.1 185 APDLKSVTKNVILQKTAGNWGPnatfrfpaRDGTGGIWIAVAKTLPDEKKRFGEKGT-VEKvDADKKKVVLMDGTTINYKRLVSTMNVDQLV 275
                    88888888888888888888889999*****************88888888886633.44446688888889***************99987 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.3e-06    0.0077       1      30 [.      11      40 ..      11      45 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.3e-06
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 +++GaGP Gl+aa  l +++  ++lil+ +
   KKY14218.1 11 LVVGAGPTGLGAAKRLHQVDTASWLILDSN 40
                 69*************************986 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   6.8e-05      0.12       2      28 ..       9      36 ..       8      57 .. 0.76
   2 ?    2.9   0.0      0.03        55     205     232 ..     241     266 ..     189     278 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.8e-05
                 SEEEE--SHHHHHHHHHHHH.HTS-EEE CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaq.agakvtl 28
                 dv+v+G+Gp Gl aa++l q   a  ++
   KKY14218.1  9 DVLVVGAGPTGLGAAKRLHQvDTASWLI 36
                 89****************9943444444 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.03
                  EEEEEEETTEEEEEEETTSCEEEESEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 205 svkeidgngeklevvledgeeidadlvv 232
                  +v+++d++++  +vvl dg++i+++ +v
   KKY14218.1 241 TVEKVDADKK--KVVLMDGTTINYKRLV 266
                  4556665555..5666666666665555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   9.4e-06     0.017      17      55 ..       7      45 ..       3      50 .. 0.85
   2 ?   -2.8   0.0       1.7   3.1e+03     146     180 ..     249     283 ..     242     288 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.4e-06
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--T CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailersvspGG 55
                  Dv++vGaG++GL aa+ l +      +il+++  pGG
  KKY14218.1  7 SVDVLVVGAGPTGLGAAKRLHQVDTASWLILDSNPVPGG 45
                67******************9997777888888877777 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.7
                 TTTSS.-B-EEEEEEEEEE--GSSSTTTTHHHHHH CS
        Thi4 146 hdtqscvDPlvirakvvvdatGhdgeivavvvkki 180
                  ++   +D  +i+ k +v++   d  + ++  +k+
  KKY14218.1 249 KKKVVLMDGTTINYKRLVSTMNVDQLVEKMDDQKL 283
                 45566789999999999988887777776666665 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.3e-05     0.024       2      22 ..       8      28 ..       7      38 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.3e-05
                   EEEEEE--SHHHHHHHHHHHH CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLse 22
                   +dVl+VGaGp+Gl +a+ L++
     KKY14218.1  8 VDVLVVGAGPTGLGAAKRLHQ 28
                   79**************99986 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.5e-05     0.046       1      42 [.       9      51 ..       9      96 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.5e-05
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraG.akvlLveergvlGGlltsgl 42
                  Dv+VvG+gp G+ AA    + + a+ l+++ ++v GGl++  +
    KKY14218.1  9 DVLVVGAGPTGLGAAKRLHQVDtASWLILDSNPVPGGLASTDV 51
                  9***************99987725778889********99766 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.7e-05      0.14       1      36 [.       9      47 ..       9     156 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.7e-05
                EEEEECTSHHHHHHHHHHHHTT...EEEEESSSSTTSSG CS
         DAO  1 dvviiGGGiiGlstAyeLarrg...Vtllekgdiagsga 36
                dv+++G+G +Gl++A  L +      ++l++++ +g  a
  KKY14218.1  9 DVLVVGAGPTGLGAAKRLHQVDtasWLILDSNPVPGGLA 47
                8*****************6654678999**999999533 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00016      0.29       2      33 ..       9      41 ..       8      45 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00016
                 SEEEE--SHHHHHHHHHHHHTT-.-EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgk.rVlllekak 33
                 dv+v+G+G+ Gl aA ++++ +  + l+l++++
   KKY14218.1  9 DVLVVGAGPTGLGAAKRLHQVDTaSWLILDSNP 41
                 89****************876650455667665 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1    0.0006       1.1       1      26 [.       9      33 ..       9      46 .. 0.75
   2 ?   -3.8   0.0       2.8   5.1e+03      36      73 ..     158     189 ..     154     194 .. 0.68
   3 ?   -0.5   0.0      0.27   4.8e+02     102     136 ..     235     266 ..     223     291 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0006
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglk 26
                   Dv+v+GaGp gl  A+rl ++    +
     KKY14218.1  9 DVLVVGAGPTGLGAAKRL-HQVDTAS 33
                   9*****************.4433334 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.8
  Lycopene_cycl  36 llfpnny.vWsdefedlgaleecvehsWsgtivylddgk 73 
                     ++p ny vW    + ++        +W g +v ++d k
     KKY14218.1 158 FMRPYNYkVWAVPTTKMQ-------CQWLGERVAAPDLK 189
                    688999999998887777.......45666666666555 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.27
  Lycopene_cycl 102 vklleakvesveeeeageslvvleggrkirarlvv 136
                    +   +++ve+v ++++    vvl +g +i+ +  v
     KKY14218.1 235 RFGEKGTVEKVDADKK---KVVLMDGTTINYKRLV 266
                    3346789999999998...8999999998766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.52
# Mc/sec: 3111.10
//
Query:       KKY14219.1  [L=411]
Description: hypothetical protein UCRPC4_g06823 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-20   72.9  26.8    3.5e-20   72.5  26.8    1.1  1  TPT       Triose-phosphate Transporter family
    0.00042   19.6  26.2    0.00077   18.8  26.2    1.4  1  UAA       UAA transporter family
  ------ inclusion threshold ------
        9.7    6.4  45.0       0.19   11.9  17.7    2.8  3  EamA      EamA-like transporter family


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5  26.8   5.9e-24   3.5e-20       4     289 ..      45     332 ..      42     333 .. 0.86

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 5.9e-24
         TPT   4 gllfllWYllnvvfnilnKkilnvf..pyPltvsavqllvgsvlilvlwal....glkkrpkisse.flkailplalvktlghvlavvslskvaVSfth 95 
                 ++++++W  l++++ ++nK il ++   +P+++++ +++  ++++ +l ++    + +k+ ki+ + +l+ai+p++++  l+ + ++ +    +V f +
  KKY14219.1  45 AVYVVTWISLSSAVILFNKWILDTAgfRFPIFLTSWHMAFATLMTQILARTttalDGRKTVKITGRvYLRAIVPIGFFFSLSLICGNKAYLYLSVAFIQ 143
                 6899******************9976699***********999998887653222557899999999******************************** PP

         TPT  96 tvKasePiFtvilsrlllgek.lsllvylsLlpivgGvalasvtElsFnligfisAlisnltfslrnifsKkllkklkdldalnlfaiitilslllllP 193
                 ++Ka++P+  v++++  lg   ++ + +  +  iv Gv++as+ E+ F l+gf+  +    ++++r  +   ll++         f++  ++sl ++ P
  KKY14219.1 144 MLKATMPVA-VLITTWTLGVApFNAKTLFNVSFIVIGVIIASFGEIRFVLTGFLWQVGGIAFEAVRLTMVQALLSS-------AEFKMDPLVSLYYFAP 234
                 *******95.55566666665156666778999***********************99999999998887777777.......568899999******* PP

         TPT 194 vallvegvlktpsllkstk.vslkev.llllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGvflY 289
                 v  +++g++  ++ + +++ + +++v l+ l++++++ +l n+    ++ ++s +  ++  ++K ++ +++s+l+ ++pvs  + +G ++a+ G + Y
  KKY14219.1 235 VCAIMNGLTALVVEVPAMTmNDIYSVgLFVLVANAMVAFLLNVSVVFLIGKTSSLVLTLCGVLKDILLVAASMLIWGTPVSGTQFFGYSIALSGLVYY 332
                 *******555555544443134555526788999************************************************************9988 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8  26.2   1.3e-07   0.00077      26     299 ..      68     333 ..      45     336 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.3e-07
         UAA  26 eepkafgnlltfvqflfvalegllesid.....ilkkrkiPlktYvilv....alffitsvlnnealkydisvPvhiifrssklipvmilGililgkrY 115
                 + + +f ++lt   ++f +l+  + +++      +k  ki  + Y+ ++    ++f ++ ++ n+a  y +sv +  +++++  ++v+i+ + +    +
  KKY14219.1  68 TAGFRFPIFLTSWHMAFATLMTQILARTttaldGRKTVKITGRVYLRAIvpigFFFSLSLICGNKAYLY-LSVAFIQMLKATMPVAVLITTWTLGVAPF 165
                 3446666666666644443333222222233335888889988887654122168889999********.***************************** PP

         UAA 116 sllqylsvllltlGviiftllsakdkkedskeslnkfllGiallvlallldavlglvqeklykkygkhskealfyshllslplflllqgellsavkfls 214
                 +      v ++++Gvii+++            +  + l+G++  v+ ++++av  ++ ++l +  + + +  +   ++ ++  ++   ++l+ +v ++ 
  KKY14219.1 166 NAKTLFNVSFIVIGVIIASF-----------GEIRFVLTGFLWQVGGIAFEAVRLTMVQALLSSAEFKMDPLVSLYYFAPVCAIMNGLTALVVEVPAMT 253
                 ********************...........3468899999999999999999888888888777777777777777899999999999********** PP

         UAA 215 esedvallslpsklfylllnvltqyvcikgVlilisefgaltvtlvltlRKfvslllSillFknpltlqhlvgtllVflglllys 299
                  +  ++     + lf+l++n++++++   +V  li ++++l++tl   l  ++ +  S+l+++ p++ ++++g ++ + gl++y 
  KKY14219.1 254 MNDIYS-----VGLFVLVANAMVAFLLNVSVVFLIGKTSSLVLTLCGVLKDILLVAASMLIWGTPVSGTQFFGYSIALSGLVYYK 333
                 999999.....59*******************************************************************99986 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9  17.7   3.1e-05      0.19      13     136 ..      54     184 ..      44     185 .. 0.86
   2 ?    4.1  14.4    0.0084        50       8     134 ..     199     331 ..     192     333 .. 0.74
   3 ?   -1.6   0.2      0.48   2.9e+03      76      84 ..     367     375 ..     358     393 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.1e-05
        EamA  13 fwaiyfvlskillrkv...spltltfvrfliagilllii....allkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvf 104
                 ++++ +++ k++l +     p++lt + + +a+++  i+    ++l ++k  k++ + +l  ++   + + l  ++ ++a  ++s++++ ++ +++Pv 
  KKY14219.1  54 LSSAVILFNKWILDTAgfrFPIFLTSWHMAFATLMTQILarttTALDGRKTVKITGRVYLRAIVPIGFFFSLSLICGNKAYLYLSVAFIQMLKATMPVA 152
                 5677777888888888555689**************88866655555555579999999999999999999999************************* PP

        EamA 105 tlilsvlllgekltlkqllgivlillGvllil 136
                 +li  + l   +++ k+l+ + +i++Gv++ +
  KKY14219.1 153 VLITTWTLGVAPFNAKTLFNVSFIVIGVIIAS 184
                 ****************************9876 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0084
        EamA   8 llaalfwaiyfvlskillrkv....spltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafll....ffyalkktsasnaslit 98 
                 + +  f a+  ++ ++ll++     +pl  + +   +++i+  ++al+ e +   ++ +d+ ++ l+ l++++++ +l     + ++ kts+ + +l+ 
  KKY14219.1 199 VGGIAFEAVRLTMVQALLSSAefkmDPLVSLYYFAPVCAIMNGLTALVVEVPA--MTMNDIYSVGLFVLVANAMVAFLlnvsVVFLIGKTSSLVLTLCG 295
                 55555666666666666665544446666666666699999999999999999..99999999955555555444433011155788999999999999 PP

        EamA  99 slePvftlilsvlllgekltlkqllgivlillGvll 134
                  l  ++ +  s+l++g +++ +q++g  ++l G+++
  KKY14219.1 296 VLKDILLVAASMLIWGTPVSGTQFFGYSIALSGLVY 331
                 *********************************986 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.48
        EamA  76 vlafllffy 84 
                 v afl+ f+
  KKY14219.1 367 VGAFLFVFI 375
                 222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 2668.88
//
Query:       KKY14220.1  [L=354]
Description: hypothetical protein UCRPC4_g06824 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.6   1.2       0.36   10.9   0.1    2.3  2  GST_C_2   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1     2e-05      0.36      31      68 ..     192     229 ..     176     230 .. 0.90
   2 ?   -0.6   0.1     0.078   1.4e+03      18      34 ..     248     267 ..     246     269 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2e-05
                 CS--HHHHHHHHHHHHHHHHHHS----TT-HHHHHHHH CS
     GST_C_2  31 dqptlaDialapflvrlraagpgfdireaypnlraWle 68 
                 ++pt+ D++la  ++++r a+++  + +a+ +++++++
  KKY14220.1 192 AEPTIDDFTLALGIGWTRIAHEDSALQAAARGWAKYVD 229
                 49**********************************97 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.078
                 CTTT---SS....CTTCS-- CS
     GST_C_2  18 leahLadsp...flfGdqpt 34 
                 l+a+L +     flfG+ ++
  KKY14220.1 248 LNAYLIGANegfFLFGEDLS 267
                 78888888889999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2818.84
//
Query:       KKY14221.1  [L=814]
Description: putative serine threonine protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-70  237.2   0.0    2.6e-70  236.8   0.0    1.2  1  Pkinase         Protein kinase domain
    1.1e-33  116.6   0.0      3e-33  115.2   0.0    1.6  1  Pkinase_Tyr     Protein tyrosine kinase
      2e-06   27.0   0.6    3.5e-06   26.2   0.6    1.3  1  Haspin_kinase   Haspin like kinase domain
    8.1e-05   22.1   0.0    0.00013   21.4   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    0.00051   19.7   0.2       0.22   11.1   0.0    2.3  2  FTA2            Kinetochore Sim4 complex subunit FTA2
     0.0016   18.1   0.1     0.0041   16.7   0.1    1.7  1  RIO1            RIO1 family
     0.0035   16.7   0.1       0.02   14.2   0.0    2.2  2  Kinase-like     Kinase-like
     0.0091   15.9   0.0      0.016   15.1   0.0    1.3  1  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.061   12.1   0.0       0.11   11.3   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.8   0.0   1.3e-73   2.6e-70       2     264 .]     245     513 ..     244     513 .. 0.95

  Alignments for each domain:
  == domain 1  score: 236.8 bits;  conditional E-value: 1.3e-73
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 +  ++lGeGs+++V+ a +++t+k++A+K+++k+++ k+k+ k v  E + l++l  hp ivrly++f+++++ly+vl++++ggel ++l+r +++see
  KKY14221.1 245 SFGRTLGEGSYSTVLLAQDRQTHKEYAIKILDKRHIIKEKKvKYVNIEKNTLNRLTdHPGIVRLYYTFQDERSLYFVLDLASGGELLSHLKRVSTFSEE 343
                 56799*********************************999899999********99***********************************9****** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.................BCTTTSCGGGS-HHHHTTSCBSHHHHH CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.................ltsfvgtseYlAPEvlkeneyskkvDv 180
                  ++++ +qil  ++y+H+ giiHrDlKpeN+L+d++ ++KitDFG ak l+++++                 ++sfvgt eY++PE+l+e++  k++D+
  KKY14221.1 344 CTRFYSAQILDTIDYMHRCGIIHRDLKPENVLLDDQMHVKITDFGTAKILSEKKQdsiglpldgseesdsdrAQSFVGTAEYVSPELLTEKNACKASDL 442
                 **********************************999***************999******************************************** PP

                 HHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 181 WslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 W+ G+i+y+ll+g+ppf+++++ +++          +ki+    ++++ ++ ++e a+dl+++ll  dp++Rl++e++++h+++
  KKY14221.1 443 WAFGCIVYQLLAGRPPFKASNEYQTF----------QKIV---GLDYEFPRGFPEVARDLVERLLVLDPSQRLSIEHIKNHQFF 513
                 ******************55554433..........3344...45899**********************************98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2   0.0   1.5e-36     3e-33       2     257 ..     245     509 ..     244     511 .. 0.87

  Alignments for each domain:
  == domain 1  score: 115.2 bits;  conditional E-value: 1.5e-36
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHHHHHHHH.HHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTC CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtl.keeateeekeelle.eakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkke 96 
                  ++g++lGeG++++V  ++ +    +++ + a+K+l k++  +e+k + ++ e +++++l +hp iv+l+    +e++l++v+++++gG+Ll++L++  
   KKY14221.1 245 SFGRTLGEGSYSTVLLAQDR----QTHKEYAIKILdKRHIIKEKKVKYVNiEKNTLNRLtDHPGIVRLYYTFQDERSLYFVLDLASGGELLSHLKRV- 337
                  6899*************999....89999******4444455556666666*********************************************8. PP

                  TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE..............EETTSSTSGGGGS-HHHHHHS CS
  Pkinase_Tyr  97 kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey..............vkkeeaklpvkWmapEslkek 180
                   ++++ + +  +++q+ + ++y+++  ++Hrdl   NvLl+++++vki+DfG a+ ++++++                ++++     ++++pE l+ek
   KKY14221.1 338 -STFSEECTRFYSAQILDTIDYMHRCGIIHRDLKPENVLLDDQMHVKITDFGTAKILSEKKQDsiglpldgseesdsDRAQSFVGTAEYVSPELLTEK 434
                  .89999999999****************************************999985554444566666544322122233335789********** PP

                  EEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 181 kftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  +  ++sD W+fG +++ ++  g+ p++  ++ ++++k+  g   e p+  pe   +l+++ +  dp++R +++++ +
   KKY14221.1 435 NACKASDLWAFGCIVYQLLA-GRPPFKASNEYQTFQKIV-GLDYEFPRGFPEVARDLVERLLVLDPSQRLSIEHIKN 509
                  *******************9.********9999999985.6778999999*********************999875 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.6   1.7e-09   3.5e-06     137     258 ..     262     396 ..     255     406 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.7e-09
  Haspin_kinase 137 edvtiskelslkelkslklvkgtypglllllqdkvlkek.........pdfyseqqlflvlllkdkGtdLeev.klkswkqalsifwqivkiLyva 222
                    +d ++ ke  +k l + +++k +  + + + ++ +++             f++e  l+ vl l  +G+ L+++ +++++++    f++ ++iL   
     KKY14221.1 262 QDRQTHKEYAIKILDKRHIIKEKKVKYVNIEKNTLNRLTdhpgivrlyYTFQDERSLYFVLDLASGGELLSHLkRVSTFSEECTRFYS-AQILDTI 356
                    56677888889888888888888777788888888877788888888899999********************667888888888885.5677776 PP

  Haspin_kinase 223 E..tkfeFEHRdLhldniLvdknlnvtlidlklsRle..s 258
                    +   +    HRdL+ +n+L+d++++v + d+  +++   +
     KKY14221.1 357 DymHRCGIIHRDLKPENVLLDDQMHVKITDFGTAKILseK 396
                    622567899************************9998432 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   6.7e-08   0.00013     100     167 ..     325     388 ..     311     400 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 6.7e-08
         Kdo 100 egaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 +   +L  +l++ ++++ee +r    ++  +i  +hr g+ H+dl + n+ll+ +     ++ + D+ 
  KKY14221.1 325 ASGGELLSHLKRVSTFSEECTRFYSAQILDTIDYMHRCGIIHRDLKPENVLLDDQM----HVKITDFG 388
                 5555677888888889************************************9997....77777775 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.1     0.003         6      15      81 ..     235     302 ..     223     307 .. 0.75
   2 !   11.1   0.0   0.00011      0.22     174     213 ..     345     389 ..     321     391 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.003
        FTA2  15 pFdfsaekdiefleyLgkglhsiVlkvkirgk..eYALKlFrfleaeeleeaeedlkiprealkelasy 81 
                 ++ +++ kd+ f   Lg+g  s Vl ++ r+   eYA+K+  + +    e++ ++ +i++++l++l+++
  KKY14221.1 235 RYIKKGVKDFSFGRTLGEGSYSTVLLAQDRQThkEYAIKILDKRHI-IKEKKVKYVNIEKNTLNRLTDH 302
                 455556689*****************98776545*****8766633.3337777777888887777765 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00011
        FTA2 174 evsqlpkllrdlkklhklgIvvrDlkeenyi.....dgkLvDlsa 213
                 +  +  ++l+ ++ +h++gI++rDlk+en++       k+ D+++
  KKY14221.1 345 TRFYSAQILDTIDYMHRCGIIHRDLKPENVLlddqmHVKITDFGT 389
                 5556689*********************98632111345666665 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   2.1e-06    0.0041      91     152 ..     327     390 ..     262     401 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.1e-06
                 TTEEGGBHHHCG-.HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GTTE CS
        RIO1  91 dgvaapklkdvee.eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvsQa 152
                  g  + +lk v++ +ee ++ y   +   +  ++++g++H DL   Nvl+d++ +v i D++ a
  KKY14221.1 327 GGELLSHLKRVSTfSEECTRFYSAQILDTIDYMHRCGIIHRDLKPENVLLDDQmHVKITDFGTA 390
                 5667889999996688999988877777889999*******************99999999765 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.88   1.7e+03      17      44 ..     247     274 ..     238     296 .. 0.82
   2 !   14.2   0.0   9.8e-06      0.02     142     191 ..     341     390 ..     321     501 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.88
  Kinase-like  17 gellkkgdrsvvfevkdqetgeplavkv 44 
                  g  l++g  s v++++d +t ++ a+k+
   KKY14221.1 247 GRTLGEGSYSTVLLAQDRQTHKEYAIKI 274
                  6678999999999999999999999886 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 9.8e-06
  Kinase-like 142 etiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaL 191
                   + +     +q++  + +++  g++h +++++n+lld +  +++++f+  
   KKY14221.1 341 SEECTRFYSAQILDTIDYMHRCGIIHRDLKPENVLLDDQMHVKITDFGTA 390
                  3445555568999999******************************9763 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   8.2e-06     0.016     165     197 ..     361     391 ..     307     392 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.2e-06
                 -EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 165 ptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 + +++H+Dl+p N+l+d d+ +v  + Df++a+
  KKY14221.1 361 RCGIIHRDLKPENVLLD-DQMHV-KITDFGTAK 391
                 5689*************.77777.799999986 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.5e-05      0.11     323     389 ..     360     434 ..     351     445 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.5e-05
  Pkinase_fungal 323 flkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddsses..............garertGTleFmaievlkge 389
                     +  +gi+HrD   +N+l+ d+      +  + D+  ak ls+++++s               a+  +GT+e+++ e+l ++
      KKY14221.1 360 H-RCGIIHRDLKPENVLLDDQ-----MHVKITDFGTAKILSEKKQDSiglpldgseesdsdRAQSFVGTAEYVSPELLTEK 434
                     4.89***************55.....45556666666666665555555555555444433447799*****999999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.47
# Mc/sec: 5201.58
//
Query:       KKY14222.1  [L=384]
Description: hypothetical protein UCRPC4_g06826 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2554.55
//
Query:       KKY14277.1  [L=849]
Description: putative serine threonine protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-56  190.4   0.0    5.1e-56  190.0   0.0    1.2  1  Pkinase         Protein kinase domain
    1.4e-37  129.4   0.0    2.7e-37  128.5   0.0    1.4  1  Pkinase_Tyr     Protein tyrosine kinase
    1.4e-05   24.5   0.1    6.6e-05   22.4   0.3    1.9  2  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    0.00018   20.4   0.1    0.00018   20.4   0.1    2.5  3  Pkinase_fungal  Fungal protein kinase
     0.0015   17.6   0.0     0.0034   16.4   0.0    1.5  1  Haspin_kinase   Haspin like kinase domain
     0.0055   16.6   0.0       0.27   11.1   0.0    2.2  2  APH             Phosphotransferase enzyme family
     0.0067   15.8   0.0      0.011   15.1   0.0    1.3  1  Kinase-like     Kinase-like
  ------ inclusion threshold ------
          6    6.8   7.1         15    5.5   7.1    1.6  1  Serglycin       Serglycin


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.0   0.0   2.3e-59   5.1e-56       1     264 []      45     316 ..      45     316 .. 0.90

  Alignments for each domain:
  == domain 1  score: 190.0 bits;  conditional E-value: 2.3e-59
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH........HHHHHHHHHHHHHS...CTTB--EEEEEEESSEEEEEEE--TTEBHHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke........kkvlrEikilkklk...hpnivrlyevfeekdelylvleyveggeladl 88 
                 y+ +e +G+GsfG+Vy+++e+ tg+ vA+K+i+ ++a+            k++ +E+kil+ lk    pn+  ++e+ + +++l++v e+v+gg++++l
  KKY14277.1  45 YTFEELVGKGSFGRVYRCHENGTGRVVAIKVIDIDDADFAAVgadaeeqiKDFNKEVKILQDLKqsgVPNLNLIIEARSVHSQLWMVCEHVQGGSVKTL 143
                 678899**************************99987654434455566899***********96666777777777777******************* PP

                 HH.HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH...TTSCBSHHHHHHH CS
     Pkinase  89 le.rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvl...keneyskkvDvWs 182
                 ++ ++ +l+e+ +  +a++++++l+ lH++g++HrD+K +NiL++e g ++++DFG+a+++ ++++  ++fvgt +Y+APE     +++ey+ +vD W+
  KKY14277.1 144 MRaTNDKLKEKYIIPVAREVAKALAGLHKAGFMHRDVKAANILVSEVGYIQLCDFGIAAHVAHHEDkRKTFVGTLHYMAPEHFvddSAREYDVSVDTWA 242
                 **88888*****************************************************99988879*************9999999*********** PP

                 HHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 183 lGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                  G+ lye+  g+pp  + ++  + ++ +++       l ++  +lp ++++s+ +++l++++l  ++++R+t+e +l+h+yl
  KKY14277.1 243 FGCSLYEMAVGRPPNTDLREPRQLQSRMRR-------L-NKGIALPADEDFSDGLRELVSNILIPNKTERITMEGVLNHEYL 316
                 ****************55555544444444.......4.347899***********************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.5   0.0   1.2e-40   2.7e-37       3     256 ..      47     311 ..      45     313 .. 0.86

  Alignments for each domain:
  == domain 1  score: 128.5 bits;  conditional E-value: 1.2e-40
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST.........TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE...SSSSEEEEEE--TTEBH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlke.........eateeekeelleeakimkklkhpnivkllgvct...keepllivteyvkgGdL 88 
                  +++ +G+G+fG+V++++ +     +   Va+K+++             ee+ +++ +e+ki+++lk+  + +l  ++     +++l++v e v+gG++
   KKY14277.1  47 FEELVGKGSFGRVYRCHEN----GTGRVVAIKVIDIddadfaavgADAEEQIKDFNKEVKILQDLKQSGVPNLNLIIEarsVHSQLWMVCEHVQGGSV 140
                  78899***********999....888999***996323444444333456699************99888888777765447788************* PP

                  HHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE...EE CS
  Pkinase_Tyr  89 lkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk...ft 183
                  ++ +r++ ++kl+ k ++ +a +vAk+++ L++  ++Hrd+ a N+L+se   ++++DfG+a ++   ++  k+++    +++mapE + + +   + 
   KKY14277.1 141 KTLMRAT-NDKLKEKYIIPVAREVAKALAGLHKAGFMHRDVKAANILVSEVGYIQLCDFGIAAHV--AHHEDKRKTFVGTLHYMAPEHFVDDSareYD 235
                  ******9.*********************************************************..44455667778899*******98877677** PP

                  HHHHHHHHHHHHHHHHTTSSGTTTTS.HHHH...HHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 184 sksDvWsfGvllwEiftlgespypgl.knee...vleklkegkrlekpekcpeelyelmkkcweedpeeRptfselv 256
                  ++ D W+fG  l+E++  g+ p ++l ++++    +++l++g  l++ e+ ++ l el+++ +  +++eR t++ ++
   KKY14277.1 236 VSVDTWAFGCSLYEMAV-GRPPNTDLrEPRQlqsRMRRLNKGIALPADEDFSDGLRELVSNILIPNKTERITMEGVL 311
                  **************998.****9998544442225677899999****************************98765 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.3     3e-08   6.6e-05      59     171 ..      98     203 ..      93     228 .. 0.80
   2 ?   -1.8   0.0      0.72   1.6e+03      22      49 ..     696     722 ..     687     728 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 3e-08
         Kdo  59 vrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwae.laeelkrallkavgrliaklhragvnHadlyaknillqqeee 156
                  +E+++l+ L++ gv+ ++ +     +  +  +  ++ e+++g  ++++l++  ++ l+e+      ++v+++ a lh+ag +H+d+ a nil+ + + 
  KKY14277.1  98 NKEVKILQDLKQSGVPNLNLIIE---ARSVHSQLWMVCEHVQGG-SVKTLMRATNDkLKEKYIIPVAREVAKALAGLHKAGFMHRDVKAANILVSEVG- 191
                 689*************9998864...4455666779*****996.5666666544448888888888999999999******************9988. PP

         Kdo 157 eeaeiwliDldkarl 171
                     i l D+  a++
  KKY14277.1 192 ---YIQLCDFGIAAH 203
                 ...777778766655 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.72
         Kdo  22 fvvaekvnaalrkyyrggllgklskdly 49 
                 ++v+++ + +  +++rg+ + +++ d +
  KKY14277.1 696 SEVDPF-HFDQPHIHRGTVTSRFTTDSM 722
                 344455.99999*********9999854 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.16   3.7e+02     185     213 ..      98     126 ..      13     153 .. 0.74
   2 !   20.4   0.1   8.1e-08   0.00018     308     383 ..     156     223 ..     140     230 .. 0.86
   3 ?   -2.0   0.5      0.52   1.2e+03     224     290 ..     602     669 ..     573     712 .. 0.57

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.16
  Pkinase_fungal 185 ksEaelLkkaeergvegvarlvahedvee 213
                     ++E+++L+  +++gv ++  ++  ++v+ 
      KKY14277.1  98 NKEVKILQDLKQSGVPNLNLIIEARSVHS 126
                     48999999999999999999999988874 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 8.1e-08
  Pkinase_fungal 308 llealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmai 383
                     ++ + r++ k++  L+ kag++HrD+ + Nil+      +     L D+ +a ++++  +e+++++ +GTl +ma 
      KKY14277.1 156 IIPVAREVAKALAGLH-KAGFMHRDVKAANILVS-----EVGYIQLCDFGIAAHVAH--HEDKRKTFVGTLHYMAP 223
                     566788999*******.*****************.....4567789**********5..6667789********95 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.52
  Pkinase_fungal 224 gldvtkaekfrskrkvvsssssqe......lsskaevklkksesskkvekrsvdssv.stskrsrlenrvhrrl 290
                     + ++ +  +f s+ + +s++           ss++  ++++ +s++++ + +++++v +t++r++  + +h+ +
      KKY14277.1 602 KHKTMEW-SFASAMAEASET---DdpsgpsISSSRPQSRRPISSRTRQPLLRSQTEVvTTRDREE--TDFHHAI 669
                     2222222.333322222222...023344444455555555555555555555555555555555..4445444 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.5e-06    0.0034     108     254 ..      48     201 ..      18     219 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.5e-06
  Haspin_kinase 108 d...seklssevyqtke..kdkevvlKvipl......evledvtiskelsl....kelkslklvkgt.ypglllllqdkvlkekpdfyseqqlflv 187
                    +   ++++++ vy+++e  + + v++Kvi +           v  + e ++    ke k l+ +k++  p+l l+++++          + ql +v
     KKY14277.1  48 EelvGKGSFGRVYRCHEngTGRVVAIKVIDIddadfaA----VGADAEEQIkdfnKEVKILQDLKQSgVPNLNLIIEARS--------VHSQLWMV 131
                    155689999******99666788999*****5544441....44445555533344555555444440133333333333........35679999 PP

  Haspin_kinase 188 lllkdkGtdLeev..klksw..kqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlkls 254
                    ++  ++G+  + +     +   k +  +  +++k L+    k  F HRd +  niLv + + + l+d+ ++
     KKY14277.1 132 CEHVQGGSVKTLMraTNDKLkeKYIIPVAREVAKALAGLH-KAGFMHRDVKAANILVSEVGYIQLCDFGIA 201
                    9988888654444213333311346677889999999875.679************************876 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0045        10      13     107 ..      59     172 ..      50     173 .. 0.66
   2 !   11.1   0.0   0.00012      0.27     152     185 ..     159     191 ..     141     203 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0045
                 EEEEEETT.--EE.EEE.............E-TTS-HHHHH...HHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS.......HH CS
         APH  13 tylvttpa.gryv.lrr.............npparaaeeir...revallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr.......kl 86 
                 +y++++ + gr+v                 +   +a+e+i    +ev++l+ L ++gvp   ++   + + ++  l+ + e v g s+ +       kl
  KKY14277.1  59 VYRCHENGtGRVVaI-KvididdadfaavgA---DAEEQIKdfnKEVKILQDLKQSGVPNLNLII--EARSVHSQLWMVCEHVQGGSVKTlmratndKL 151
                 666666664444422.235555555433321...3444444222888899999999886666665..889999999*********99999888777766 PP

                 HHHHHHHHHHHHHHHHCCHHC CS
         APH  87 saaqlpellealgeflaalhq 107
                  ++ +  ++++++ +la lh 
  KKY14277.1 152 KEKYIIPVAREVAKALAGLHK 172
                 666777778888888888886 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00012
                 HHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TT CS
         APH 152 vlaalaallpgelptvllHgDlhpgNllvdpddg 185
                 v++++a+ l+g  +++++H+D +  N+lv  + g
  KKY14277.1 159 VAREVAKALAGLHKAGFMHRDVKAANILVS-EVG 191
                 55566666666668***************9.544 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     5e-06     0.011     154     257 ..     164     264 ..     139     304 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5e-06
  Kinase-like 154 irlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPlt 251
                   +  a L++ g +h ++++ n+l  e g + l +f+    + ++       k+f       +   +  +   ++  ++d+W+ G + y ++    P+t
   KKY14277.1 164 AKALAGLHKAGFMHRDVKAANILVSEVGYIQLCDFGIAAHVAHHED---KRKTFVGTLHYMAPEHFVDDSAREYDVSVDTWAFGCSLYEMAVGRPPNT 258
                  456799*****************************86554444333...223333332233323344456779999******************9998 PP

  Kinase-like 252 lateea 257
                     e  
   KKY14277.1 259 DLREPR 264
                  766544 PP

>> Serglycin  Serglycin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   7.1    0.0067        15      92     105 ..     816     829 ..     805     839 .. 0.61

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0067
   Serglycin  92 sgsgsGsGsGsGsg 105
                 sgsgsGsGsGsG +
  KKY14277.1 816 SGSGSGSGSGSGGS 829
                 34444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (849 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       932  (0.0519828); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.48
# Mc/sec: 5355.59
//
Query:       KKY14278.1  [L=91]
Description: hypothetical protein UCRPC4_g06811 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0053   16.4   0.4     0.0057   16.2   0.4    1.0  1  Lipoprotein_2  Borrelia lipoprotein


Domain annotation for each model (and alignments):
>> Lipoprotein_2  Borrelia lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.4   3.2e-07    0.0057      10      75 ..      15      79 ..      10      91 .] 0.83

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.2e-07
  Lipoprotein_2 10 dlvsdvLGlkveskkskvgkyfkkvgetvesvktkLnkivaelkeekkknaegteksveklvegkl 75
                   + ++++LG +v++     g+++++vg+tv +++++ +k+v + +   k +a+gt + v+    +k+
     KKY14278.1 15 GGIGSALGGTVKTVGGVGGNVLSTVGNTVGTLGEGVGKTVTDASTGIKETASGTGSGVQGTT-NKI 79
                   55899********************************************9999999987333.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      131  (0.0073066); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.29s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 610.18
//
Query:       KKY14279.1  [L=259]
Description: putative tpa: arylamine n-acetyltransferase 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-11   43.7   0.7    1.1e-08   35.1   0.1    2.8  2  Acetyltransf_2  N-acetyltransferase


Domain annotation for each model (and alignments):
>> Acetyltransf_2  N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.1   6.4e-13   1.1e-08      50     191 ..       1     177 [.       1     182 [. 0.73
   2 !    5.2   0.0   0.00086        15     194     238 ..     196     240 ..     189     242 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 6.4e-13
                     HHHHHHHHHHHHHTT-EEEEEEEEEETTGGSSS...SSSCEEEEEEEEETTE..........EEEE-SSSSCG.-SS-EESSTTCE.....EEES CS
  Acetyltransf_2  50 yelNgLlarvLkelGFevtllagrvvvkaeeaa...stertHllllVtidge..........tylvDvGFGgstltaplelesgkd.....qqtt 126
                     +e+  ++++vL+ lGF+v + +++++ + ++     +    Hl++ V ++++          +y +Dv+FGg  +  pl++  +        +++
      KKY14279.1   1 MENSIFFNHVLRGLGFQVYTAGAKIRHRVGGVPegdYIGWVHLVNVVVLKEKdpktgeivkrKYALDVSFGGDGPRCPLPMAVDGPghstaITKN 95 
                     678889******************98775543211266779********99988888899999**********8888888765532000002222 PP

                     SE..EEEEEEETTC.....EEEEEEEETTEEE............EEEEEEEEEB-HHHHHHHHHHHHHSTT-HHHCS-EEEEEE CS
  Acetyltransf_2 127 hg..ifrlveeeen.....ewvlekkkreewv............klYsftleprqiedfeeandylstspdsvftkkllcslat 191
                      g  + rl+++        + + e  +++ w+            + Y f     +++df ++n+y+ ++p+s  t ++l+ + +
      KKY14279.1  96 IGtqELRLIHD--FipsqiHRSEEDCAQKMWIyqyrnrpelpwnSFYAFPEFEFTEQDFHVMNWYTGSHPESFQTFTVLVVRFL 177
                     22123444333..1223334444444444455999999999999****************************999888887766 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.00086
                     EEEEEETTEEEEEETTSE.EEEEEE-SHHHHHHHHHHTT----SCH CS
  Acetyltransf_2 194 grltLvgrtlterekdga.leeiklltdeeleevlkekFgieleak 238
                     g++++v+ + +++   g+ +  ++ +++ee  ++lke+F+i+l+++
      KKY14279.1 196 GKVMMVNGEVKQN-LGGRtEIIKTCKNEEERVAALKEYFDIKLAQE 240
                     6777777777777.556525556677889999***********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 1712.74
//
Query:       KKY14280.1  [L=516]
Description: putative f-box protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-42  144.6  11.3    1.2e-42  144.6  11.3    2.2  2  DUF2838   Protein of unknown function (DUF2838)
  ------ inclusion threshold ------
        0.6    9.6   6.6        1.2    8.6   6.6    1.4  1  Vps5      Vps5 C terminal like


Domain annotation for each model (and alignments):
>> DUF2838  Protein of unknown function (DUF2838)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.6  11.3   1.4e-46   1.2e-42       1     111 []     162     272 ..     162     272 .. 0.99
   2 ?   -0.1   0.9      0.12   1.1e+03      17      45 ..     394     422 ..     377     431 .. 0.52

  Alignments for each domain:
  == domain 1  score: 144.6 bits;  conditional E-value: 1.4e-46
     DUF2838   1 dklsFvlgvlnvlltafllgaapellplvylvlllvllplryityrkkklhyfllDfCYfvnilllllllvlpeseklfkavfalanGplalAiilwrn 99 
                 +k+sF++gv+nv+++++l+ga+pe+++++++++l++++p+ry+ y+kk++hyfl+D+CYfvn+l++l l+v+p+s++l +++++la+G+ a+Ai +wrn
  KKY14280.1 162 EKASFIAGVMNVFISGYLIGAMPEYFYVWFTAQLCYFMPIRYFAYHKKGYHYFLADLCYFVNLLCILTLWVFPKSKRLLISTYCLAYGNNAVAIAMWRN 260
                 799************************************************************************************************ PP

     DUF2838 100 slvfhsldkvtS 111
                 slvfhs+dkvtS
  KKY14280.1 261 SLVFHSFDKVTS 272
                 ***********8 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.12
     DUF2838  17 fllgaapellplvylvlllvllplryity 45 
                 + ++  p ++++ ++ ++++l ++ + +y
  KKY14280.1 394 LTMLPCPLWFWFRWASAAFLLSVFAWSVY 422
                 33334445555555555555555555555 PP

>> Vps5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   6.6   0.00013       1.2     126     196 ..      86     162 ..      83     168 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00013
        Vps5 126 vfeqRvklwqkwqsaeqelskkkeqleKlekaaksq......qdklqqlkkeveelerkvqeaekeFeeisetikkE 196
                 ++ qR + wq+  +a+ e  +k+ ++ +++ a+ ++      +++ ++ ++++e ++++v +++k F e ++   +E
  KKY14280.1  86 ALPQRIERWQQSITAQTEKVRKQREKLRVRGANAKEramaewKKRNPTSEEQLERYKARVSRLTKRFTEATTITARE 162
                 6789******999999887777777777776655444555567888999******************9988765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1274  (0.0710581); expected 358.6 (0.02)
Passed bias filter:                      749  (0.0417759); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 3622.58
//
Query:       KKY14281.1  [L=232]
Description: putative cell cycle regulatory protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-24   85.7   5.8    1.2e-05   26.0   0.0    5.1  5  WD40         WD domain, G-beta repeat
    4.3e-09   36.6   1.8     0.0025   18.1   0.1    3.6  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    6.4e-07   29.4   0.1      0.003   17.4   0.1    2.1  2  eIF2A        Eukaryotic translation initiation factor eIF2A
     0.0091   15.0   0.0      0.028   13.4   0.0    1.8  2  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
  ------ inclusion threshold ------
      0.033   13.9   0.2       0.19   11.5   0.1    2.1  1  Gmad1        Lipoprotein LpqB beta-propeller domain
       0.04   12.6   0.1       0.05   12.3   0.1    1.3  1  Nup160       Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.1    0.0047        14       8      34 ..       2      27 ..       1      29 [. 0.79
   2 !   23.1   0.0   3.2e-08   9.5e-05       2      38 .]      37      74 ..      36      74 .. 0.89
   3 !   26.0   0.0     4e-09   1.2e-05       2      38 .]      79     119 ..      78     119 .. 0.83
   4 !    7.4   0.2    0.0029       8.5      11      38 .]     133     162 ..     123     162 .. 0.75
   5 !   21.5   0.0     1e-07    0.0003       3      38 .]     168     204 ..     166     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0047
                ESS.SSEEEEEEETTSSE....EEEEETTSEE CS
        WD40  8 tGH.ssvtslafspdgaw....lasGsdDgtv 34
                tGH   v +l      aw    l+sGs+D+ +
  KKY14281.1  2 TGHtARVGAL------AWndhiLTSGSRDRLI 27
                79*666****......6666658899***977 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 3.2e-08
                EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38
                q lr l GH + v++l+++ +   lasG+ D+++++Wd
  KKY14281.1 37 QYLRRLAGHkQEVCGLRWNTEDGQLASGGNDNKLMVWD 74
                6789999**777****98888888*************9 PP

  == domain 3  score: 26.0 bits;  conditional E-value: 4e-09
                 EEEEEEESS.SSEEEEEEETTSSEEE.EEE..TTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawla.sGs..dDgtvriWd 38 
                 ++l+ ++ H   v ++a+sp+++ l+ sG+   D+t+++W+
  KKY14281.1  79 TPLYRFSEHtAAVKAIAWSPHQHHLLaSGGgtADRTIKFWN 119
                 5788999**777************852664447*******8 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0029
                 SSEEEEEEETTSSEEEEE...ETTSEEEEEE CS
        WD40  11 ssvtslafspdgawlasG...sdDgtvriWd 38 
                 s v+ l++s++++ ++s    s  + + +W+
  KKY14281.1 133 SQVCNLSWSKNSDEIVSThgyS-QNQIVVWK 162
                 359************9953234.99999995 PP

  == domain 5  score: 21.5 bits;  conditional E-value: 1e-07
                 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 ++ +ltGH+  v  la spdg+ +++G  D t+r+W+
  KKY14281.1 168 HVVSLTGHTYrVLYLAMSPDGQTVVTGAGDETLRFWK 204
                 56689***556****************66*******6 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.056   1.7e+02      38      90 ..       5      55 ..       2      56 .. 0.76
   2 !   18.1   0.1   8.4e-07    0.0025      35      90 ..      43      97 ..      22      99 .. 0.91
   3 !   17.8   0.1     1e-06    0.0031      36      92 .]      86     143 ..      81     143 .. 0.85
   4 ?    4.8   0.0     0.012        35      18      67 ..     157     205 ..     148     210 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.056
  ANAPC4_WD40 38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90
                   +v +LaW  ++++L  +  d  +   d+ s +      ++++++v+ l W+
   KKY14281.1  5 TARVGALAW--NDHILTSGSRDRLIYHRDVRSPNQYLRRLAGHKQEVCGLRWN 55
                 567888999..589999999999999999988766655556666679999986 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 8.4e-07
  ANAPC4_WD40 35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90
                 +++++ev +L+W+ ++  La + +d+++ + d  s++ +  +s ++  av+ + W+
   KKY14281.1 43 AGHKQEVCGLRWNTEDGQLASGGNDNKLMVWDKLSETPLYRFSEHTA-AVKAIAWS 97
                 56899*************************************99999.6******7 PP

  == domain 3  score: 17.8 bits;  conditional E-value: 1e-06
  ANAPC4_WD40  36 kedsevrsLaWkpdgk.lLav..aysdgevrlldaesgkvvhslsvksekavtclgWgen 92 
                  ++   v+++aW+p  + lLa   +++d ++++ +  +g+ +++++++s+  v+ l+W++n
   KKY14281.1  86 EHTAAVKAIAWSPHQHhLLASggGTADRTIKFWNTATGQKIKEVDTGSQ--VCNLSWSKN 143
                  67889*******9876166664458999*******************99..******976 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.012
  ANAPC4_WD40  18 ellvfRl.ngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrllda 67 
                  +++v    ++++v++l  +++  +v  La +pdg+  + +  d ++r+ ++
   KKY14281.1 157 QIVVWKYpKMEHVVSL--TGHTYRVLYLAMSPDGQTVVTGAGDETLRFWKV 205
                  5555544455666666..789999*******************99998765 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.3e-05      0.07      62     142 ..      49     130 ..      27     133 .. 0.76
   2 !   17.4   0.1     1e-06     0.003      52     118 ..     125     194 ..     120     209 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.3e-05
                 EEEEEE-TTSS-EEEEESSSSCEEEEEEC.SCEEEEEEEEES-..-EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE CS
       eIF2A  62 ihdvaWspkskefaviyGkmpakvslfdl.kvkviskleeqkr..NtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakae 142
                 +  + W+++  ++a   G  ++k  ++d+    ++++++e+ +   +i +sp+++ +l +G g    ++++w++ + +ki++++
  KKY14281.1  49 VCGLRWNTEDGQLA--SGGNDNKLMVWDKlSETPLYRFSEHTAavKAIAWSPHQHHLLASGGGTADRTIKFWNTATGQKIKEVD 130
                 55566776666654..78888888888874466777777765422689999999999999999999999999999999888765 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 1e-06
                 EECCEESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEEC.SCEEEEEEEEES--EE..EE-TTSSEEEEE CS
       eIF2A  52 evvelkkegpihdvaWspkskefaviyGkmpakvslfdl.kvkviskleeqkrNti..ffspkgklvlla 118
                 ++ e+++  ++  ++Ws++s+e++  +G++++++++++  k++ +++l  +    +    sp g+ v+++
  KKY14281.1 125 KIKEVDTGSQVCNLSWSKNSDEIVSTHGYSQNQIVVWKYpKMEHVVSLTGHTYRVLylAMSPDGQTVVTG 194
                 45566677779**************************997799999998887776511578999999876 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.39   1.2e+03     136     168 ..      60      92 ..      49     105 .. 0.70
   2 !   13.4   0.0   9.5e-06     0.028     177     218 ..     165     207 ..     117     213 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.39
    Ge1_WD40 136 eesdddeaskllvltrgdkaeiwsvdmiaskyg 168
                 +  ++ + +kl+v+ + +++ ++ ++  ++  +
  KKY14281.1  60 QLASGGNDNKLMVWDKLSETPLYRFSEHTAAVK 92 
                 455667778888888888888888776555554 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 9.5e-06
    Ge1_WD40 177 ieegllkieehs.liveaafspdGtalatasedGevkffqvyl 218
                 + e ++ ++ h+  +   a+spdG ++ t + d +++f++v+ 
  KKY14281.1 165 KMEHVVSLTGHTyRVLYLAMSPDGQTVVTGAGDETLRFWKVFG 207
                 44577888889878999************************95 PP

>> Gmad1  Lipoprotein LpqB beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   6.3e-05      0.19      19     123 ..      85     188 ..      59     213 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.3e-05
       Gmad1  19 gegavdlrsaAvSrdgqqvaavtapdggrtLvvg..syggeasevleggsltrpSwdrdgalWvvedgaevvravrddaegevavveVdasalragpvt 115
                 +e ++++++ A S+  +++ a   ++  rt+  +  ++g++ +ev +g+++ ++Sw+ +++  v   g  + ++v+      +++  V + +  + +v 
  KKY14281.1  85 SEHTAAVKAIAWSPHQHHLLASGGGTADRTIKFWntATGQKIKEVDTGSQVCNLSWSKNSDEIVSTHGYSQNQIVVW---KYPKMEHVVSLTGHTYRVL 180
                 3445599***********9999966666666554449*********************9766566666666666662...2344455555555556666 PP

       Gmad1 116 elrvSrDG 123
                  l +S+DG
  KKY14281.1 181 YLAMSPDG 188
                 66666666 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.7e-05      0.05     237     303 ..     110     189 ..      67     211 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.7e-05
                 ETT-EEEEEETTTTEEEEEEE--.-SSSTTS--SSEESEEESSSSEEEE...........................E--GGG-E CS
      Nup160 237 srdgkLrvWnlltgkclatidllrdeeaqdessskstldpaesslirvs.................dggqsylvvtyspssgge 303
                 + d++++ Wn++tg+ +   d+     +q+++ s+s+ +++  s   +s                  +g++y v++++ s +g+
  KKY14281.1 110 TADRTIKFWNTATGQKIKEVDTG----SQVCNLSWSKNSDEIVSTHGYSqnqivvwkypkmehvvsLTGHTYRVLYLAMSPDGQ 189
                 68*********************....999999999988888888888877777788888888887666666666554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1493.62
//
Query:       KKY14282.1  [L=408]
Description: putative pyruvate dehydrogenase protein x component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-19   70.1   1.0    1.7e-19   69.4   1.0    1.4  1  Biotin_lipoyl    Biotin-requiring enzyme
      5e-08   33.1   0.0    1.3e-07   31.8   0.0    1.7  1  E3_binding       e3 binding domain
    3.3e-05   23.6   0.0    0.00029   20.6   0.0    2.2  2  Biotin_lipoyl_2  Biotin-lipoyl like
  ------ inclusion threshold ------
      0.082   13.6   0.1        0.6   10.8   0.0    2.3  2  HlyD_3           HlyD family secretion protein
      0.086   12.9   0.1       0.84    9.7   0.0    2.2  2  QRPTase_N        Quinolinate phosphoribosyl transferase, N-te


Domain annotation for each model (and alignments):
>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   1.0   4.8e-23   1.7e-19       5      73 .]       1      71 [.       1      71 [. 0.98

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 4.8e-23
                   ESSSEEEEEE..ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEE.E-TTCEEEEE CS
  Biotin_lipoyl  5 sPmiGesveeg.vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdt.vevgdllaki 73
                   +P+++++++eg +++++vk+Gd+ +ag++l+e+e++K++m++ea++ Gv ++i +++G++ v+vg+ +a+i
     KKY14282.1  1 MPALSPTMTEGnIATWKVKEGDSFQAGDILLEIETDKATMDVEAQDPGVMVKIFKSDGEKsVQVGTRIAVI 71
                   8***********************************************************9*******987 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   3.6e-11   1.3e-07       2      36 .]     143     180 ..     143     180 .. 0.96

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 3.6e-11
                 BE-HHHHHHHHHCT-...-TTTS---CTTTBE-HHHHC CS
  E3_binding   2 lAsPaaRklAkelGi...dLsdvkGtGpgGRItkeDVl 36 
                 +++P++  l++e+ i   ++s++++tGp GR++k+DVl
  KKY14282.1 143 PLYPSVIALIHEKHIpesEISKITATGPQGRLLKGDVL 180
                 589**********************************7 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0     8e-08   0.00029      10      37 ..      10      37 ..       4      45 .. 0.89
   2 ?   -0.2   0.0      0.24   8.8e+02      26      33 ..     176     183 ..     175     196 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 8e-08
  Biotin_lipoyl_2 10 sGrVaqlnVkdGqrVkaGdvLaelDsra 37
                      G +a++ Vk+G+  +aGd+L+e+++++
       KKY14282.1 10 EGNIATWKVKEGDSFQAGDILLEIETDK 37
                     799*********************9865 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.24
  Biotin_lipoyl_2  26 aGdvLael 33 
                      +GdvLa l
       KKY14282.1 176 KGDVLAYL 183
                      8*****98 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00017       0.6       7      40 ..      10      44 ..       7      47 .. 0.86
   2 ?   -0.4   0.0      0.52   1.9e+03      19      51 ..      60      92 ..      45     155 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
      HlyD_3  7 dGvvvelnveegevvqagdelleiipp.dtllvea 40
                 G ++ ++v+eg+  qagd llei  + +t+ vea
  KKY14282.1 10 EGNIATWKVKEGDSFQAGDILLEIETDkATMDVEA 44
                699*********************98745776776 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.52
      HlyD_3 19 evvqagdelleiippdtllveakvpaadlgsik 51
                + vq g++++ i  + +    + +p++d++ + 
  KKY14282.1 60 KSVQVGTRIAVIGEEGDDPKSLDIPEDDSKPMS 92
                568888888888877666666777777766664 PP

>> QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00023      0.84      48      69 ..      14      35 ..       6      42 .. 0.88
   2 ?    0.6   0.0      0.17     6e+02      43      65 ..      45      69 ..      36      73 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00023
                EEESS-TT-EEETTEEEEEEEE CS
   QRPTase_N 48 vellvkDGervekgdvlleieG 69
                ++++vk+G+++++gd+lleie 
  KKY14282.1 14 ATWKVKEGDSFQAGDILLEIET 35
                579*****************96 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.17
                H.TTTEEEESS-TT-E.EETTEEEE CS
   QRPTase_N 43 l.pglevellvkDGer.vekgdvll 65
                  pg+ v+++++DGe+ v+ g+ ++
  KKY14282.1 45 QdPGVMVKIFKSDGEKsVQVGTRIA 69
                368999********96366666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       767  (0.0427799); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.50
# Mc/sec: 2433.02
//
Query:       KKY14283.1  [L=1261]
Description: putative cohesin complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-51  173.7  25.9      1e-49  168.9  25.9    3.3  1  SMC_N         RecF/RecN/SMC N terminal domain
      9e-31  106.6   0.0    6.9e-30  103.8   0.0    2.7  2  SMC_hinge     SMC proteins Flexible Hinge Domain
    7.3e-11   42.4   9.8    4.3e-05   23.5   0.0    3.8  3  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    1.3e-09   38.8  18.7    1.3e-09   38.8  18.7    6.8  3  AAA_23        AAA domain
    4.1e-08   32.8   0.0    8.8e-08   31.8   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
     0.0068   16.6   0.0      0.034   14.4   0.0    2.3  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
  ------ inclusion threshold ------
      0.014   15.7   0.6      0.014   15.7   0.6    8.4  6  OmpH          Outer membrane protein (OmpH-like)
       0.52    9.1 116.1      0.046   12.6  13.6    6.8  7  Spc7          Spc7 kinetochore protein
       0.72    9.5  76.6      0.012   15.4  38.3    4.9  3  AAA_15        AAA ATPase domain
        1.1    9.7   0.0        1.1    9.7   0.0    6.8  3  ABC_tran      ABC transporter
        4.5    6.9  11.2        2.4    7.8   6.3    2.7  2  TMP_2         Prophage tail length tape measure protein
        7.5    7.1  11.1        2.8    8.5   1.3    4.2  4  DUF1474       Protein of unknown function (DUF1474)


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.9  25.9     7e-53     1e-49       2     215 ..       4    1245 ..       3    1250 .. 0.98

  Alignments for each domain:
  == domain 1  score: 168.9 bits;  conditional E-value: 7e-53
                  EEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--.....BTTCSSTTEEEEEEEEEETTEE.... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxx.... RF
       SMC_N    2 lkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk.....skekasvkkaeveitfdnedkk.... 89  
                  l rle+ nFksy+g+++ l  +  ft+i+GpNGSGKsn +dAi+FvLG +s+ +lrs++l+dl+++      ++ ++  +a+v+   d+ d +    
  KKY14283.1    4 LVRLELYNFKSYKGHHILLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSS-HLRSTHLRDLVYRgrvlkISKINEDGSATVDGAEDEADGAtqes 99  
                  679*********************************************9888.************99987655566667888888775555555666 PP

                  ....................SSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT............................... CS
                  ....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................... RF
       SMC_N   90 ....................lkiekeevsisrrvkrkgeseykingkevtkkevsellesagiske............................... 135 
                                      +    +e + +r++ ++g sey+in++ vt ++++e les++i ++                               
  KKY14283.1  100 tqngaterhdpksawvmavyEDDAGDEQQWKRTITSQGVSEYRINNRPVTAHQYNEALESENILIKarnflvfqgdveaiasqspkdltklieqisg 196 
                  6677888999999999986656667889********************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY14283.1  197 sleykaeydrlkleaeeaaeqqtfqlnrrrglnseikqyqeqkreadkyarkaderdqavishvlwklyrfqetideataeiqrhqeelkehrrsie 293 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY14283.1  294 kyeqtldhtkkehartvkdanrveraikqkessiyektnslvpvdekievttqkvkkstariaeitkekdtqaaavkqlqkdaktvekaqaqwevew 390 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY14283.1  391 qktaskqgatlngadiqqynklkeevnkrasadqirvdnlkrlqtakegtveslksrldeyeyqlkakelesrniehlkadrtaelkqtsrsleekk 487 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY14283.1  488 kevntlssertrvaqlrteldeklaevanklleadggrkqnekeirmketistlkrmfpgvkgrvhelckpkqkkfedavgiilgrhfdavvvdtek 584 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY14283.1  585 takdciqhlreqragqatfipldsikvqqpnsnlrgmhkgmrpaidtvsydepmakaimyacgnsivcddfdiakelvyqrgvdakavsidgfvvhk 681 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY14283.1  682 gglltggrtndknrrkwddtevenlirlkdklladfaslpkahrqapeeerakaeldvladkskrdkeevdalsknlqskkkevefarqqlqeikpk 778 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY14283.1  779 yakeqgelnslneeiqefqdavsgiedeifsdfcqrvgiddirqyessqgqlqqqaaqkrlefttqksridnqlsfetqrldatqnritslqnqisk 875 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY14283.1  876 dkayidelsdqrnaiqeeldvlnaeleqlgedlderkehvaaaaqlvaearkqlqqnskhveetmkeiaeyegdvqrtglnrynllkrckledinip 972 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY14283.1  973 lrsdsakldklpidevpqgdedamdidedpsssavraikvedygikpdfgalddelkededeevieqklqdaiksltaeldkmapnmravdrldste 1069
                  ************************************************************************************************* PP

                  ...............................................................................................CS CS
                  ...............................................................................................xx RF
       SMC_N  136 ...............................................................................................lL 137 
                                                                                                                  L
  KKY14283.1 1070 qklrsaekeydhsrktyrdlredfedvqrkrselfnrafghiseniapiyrdltksanyplggqayldiedsdepyldgikyhampplkrfrdmeHL 1166
                  ************************************************************************************************* PP

                  -HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  138 SgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvgvtkve 215 
                  SgGekt++alaLlfAi++++p+p+++lDe+daaLD++nv+k+a++++e+     Qf+ isl+  +++++++lvg++  +
  KKY14283.1 1167 SGGEKTMAALALLFAIHSFQPSPFFVLDEVDAALDNANVAKIAKYIREHAGPgLQFLTISLKPVFFQQSEALVGIYRDQ 1245
                  ***********************************************998777***********************954 PP

>> SMC_hinge  SMC proteins Flexible Hinge Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         8   1.2e+04      26      49 ..     172     195 ..     171     202 .. 0.83
   2 !  103.8   0.0   4.6e-33   6.9e-30       2     117 .]     546     662 ..     545     662 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 8
   SMC_hinge  26 lgnrlqalvvedeetakkiieflk 49 
                 + ++ +a+  +++++ +k+ie++ 
  KKY14283.1 172 FQGDVEAIASQSPKDLTKLIEQIS 195
                 567789999999999999999875 PP

  == domain 2  score: 103.8 bits;  conditional E-value: 4.6e-33
   SMC_hinge   2 kgvlGrladlievd.egyekAveaalgnrlqalvvedeetakkiieflkkknagratflpldrikqknkadgandknsgavplidlvevddelrkalry 99 
                 +gv Gr+ +l++++ +++e Av ++lg + +a+vv++e+tak +i++l++++ag+atf+pld+ik +++++  +  ++g++p+id v++d+  +ka+ y
  KKY14283.1 546 PGVKGRVHELCKPKqKKFEDAVGIILGRHFDAVVVDTEKTAKDCIQHLREQRAGQATFIPLDSIKVQQPNSNLRGMHKGMRPAIDTVSYDEPMAKAIMY 644
                 79*****************************************************************99999999999********************* PP

   SMC_hinge 100 llgdtlvvdsldeAeela 117
                 ++g+ +v+d+ d A+el+
  KKY14283.1 645 ACGNSIVCDDFDIAKELV 662
                 ***************985 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   2.8e-08   4.3e-05       1      27 [.      28      60 ..      28      93 .. 0.81
   2 ?   -1.4   0.2       1.1   1.6e+03      70     116 ..     449     497 ..     436     511 .. 0.82
   3 !   22.7   1.1     5e-08   7.5e-05     219     293 ..    1110    1223 ..     840    1226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.8e-08
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl......dr 27
                ++ +iGpNgsGKSn +da++++ ++       +
  KKY14283.1 28 FTSIIGPNGSGKSNSMDAISFVLGIksshlrST 60
                789*******************99875554433 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
      AAA_21  70 vryryglrlersqv..eeklssvetllesgllldkrsleeedvfnpear 116
                  +y+y l+ ++      e+l++ +t +++ + +  + +++e+++ + +r
  KKY14283.1 449 DEYEYQLKAKELESrnIEHLKADRTAELKQTSRSLEEKKKEVNTLSSER 497
                 5677888888887799999999999999999999999999998877666 PP

  == domain 3  score: 22.7 bits;  conditional E-value: 5e-08
      AAA_21  219 r......................................gvvflengdgqelparelSdGtkrll..alltallralkkgsllliDEpEngLHPkll 275 
                                                           ++  ++  + +++ +lS G k ++  all a+++  ++ +++++DE+++ L+ + +
  KKY14283.1 1110 HiseniapiyrdltksanyplggqayldiedsdepyldgIKYHAMPPLKRFRDMEHLSGGEKTMAalALLFAIHSFQPS-PFFVLDEVDAALDNANV 1205
                  1444444444444444444455555555555555556656777777788889999*********7789**********9.***************** PP

      AAA_21  276 rrllellkelsrngaQvi 293 
                  +++++ ++e++  g Q++
  KKY14283.1 1206 AKIAKYIREHAGPGLQFL 1223
                  **********99999986 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8  18.7   8.8e-13   1.3e-09       1     199 [.       6     299 ..       6     334 .. 0.56
   2 ?    5.9  11.0     0.011        17      90     199 ..     672     793 ..     647     801 .. 0.58
   3 ?    2.1   1.5      0.16   2.4e+02     107     175 ..    1023    1092 ..     966    1113 .. 0.60

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 8.8e-13
      AAA_23   1 kLkienfrsfrdqeidF..skgltlItGpNGaGKTTildAiklaLygetprlsrks.......grgfeksdveiese...................... 68 
                 +L++ nf+s+++ +i +  +  +t I+GpNG+GK+  +dAi ++L+ +++ l++++       gr ++ s+++   +                      
  KKY14283.1   6 RLELYNFKSYKGHHILLfgDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTHlrdlvyrGRVLKISKINEDGSatvdgaedeadgatqestqnga 104
                 79999*********8666888*********************************999888888555555555543335555555555556555555555 PP

      AAA_23  69 ...gkvkay..veltfenkdgrytrsiererelskkkgkttkkaklellei.................................deleqfisellgskk 129
                    + ++++  v   +e++ g++    +++r+ +++  ++++ +++  + +                                 ++l+++i+++ gs +
  KKY14283.1 105 terH-DPKSawVMAVYEDDAGDE---QQWKRTITSQGVSEYRINNRPVTAHqynealesenilikarnflvfqgdveaiasqspKDLTKLIEQISGSLE 199
                 5531.222223444466666643...4444444444444443333333333000000000001112222222222222222344444444444333333 PP

      AAA_23 130 iilnlilflgqerfeefelkdkkerleelekeleeledekkllekl..............................eqekekekeleeleeeleeilke 198
                    ++  ++ + +++ +++  +++r + l+ e+++ +++k++ +k                                +++  ++el+e ++ +e++++ 
  KKY14283.1 200 YKAEYDRLKLEAEEAAEQQTFQLNRRRGLNSEIKQYQEQKREADKYarkaderdqavishvlwklyrfqetideatAEIQRHQEELKEHRRSIEKYEQT 298
                 322222222222222222233333444444444444444444444444444447777777777777777777777745555555666666666666655 PP

      AAA_23 199 l 199
                 l
  KKY14283.1 299 L 299
                 4 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.011
      AAA_23  90 iererelskkkgkttkkaklelleideleqfisellgskkiilnlilflgqerfeefel..............kdkkerleelekeleeledekkllek 174
                 ++ + ++  k g  t + + ++ + ++ + ++++l+  k++ l  ++ l++   +  e+              k++ke++++l+k l+ +++e ++ ++
  KKY14283.1 672 VSIDGFVVHKGGLLTGGRTNDKNRRKWDDTEVENLIRLKDKLLADFASLPKAHRQAPEEerakaeldvladksKRDKEEVDALSKNLQSKKKEVEFARQ 770
                 555666666666666666666666677777777777777776655555555443333330222333456555566666777777777777777777776 PP

      AAA_23 175 leqekekekeleeleeeleeilkel 199
                 ++qe   + ++ + + el+++++e+
  KKY14283.1 771 QLQE--IKPKYAKEQGELNSLNEEI 793
                 5543..4444444444444444443 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.16
      AAA_23  107 aklelleideleqfisellgskkiil..nlilflgqerfeefelkdkkerleelekeleeledekkllekl 175 
                  a  ++l++de e+ i+++l+   ++l  +l  + +  r+   +l +++++l+++eke+++  ++ + l++ 
  KKY14283.1 1023 ALDDELKEDEDEEVIEQKLQDAIKSLtaELDKMAPNMRA-VDRLDSTEQKLRSAEKEYDHSRKTYRDLRED 1092
                  444444455555555554444433222234444444442.2233455556666666666655544444333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   5.9e-11   8.8e-08       1      46 [.       4      50 ..       4      57 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 5.9e-11
      AAA_29  1 LkrlqlvNWgtfdg.htieidlkg.atlltGpsGsGKSTllDAiqalL 46
                L rl+l+N  +++g h + +     +t ++Gp+GsGKS  +DAi+++L
  KKY14283.1  4 LVRLELYNFKSYKGhHILLFGD-AyFTSIIGPNGSGKSNSMDAISFVL 50
                789***********66666664.46*********************98 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.3e-05     0.034      28      89 ..    1161    1213 ..    1155    1214 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.3e-05
     SbcCD_C   28 rssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89  
                  r+++ lSGGek ++a+lal++a+++   s         +++LDE  + lD+ ++a++ ++++
  KKY14283.1 1161 RDMEHLSGGEK-TMAALALLFAIHSFQPS--------PFFVLDEVDAALDNANVAKIAKYIR 1213
                  68899******.99999999888877666........499**************99998876 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   9.9    0.0078        12      24     107 ..     267     350 ..     264     353 .. 0.77
   2 ?   -0.9  11.8       1.3   1.9e+03      27     107 ..     433     516 ..     426     539 .. 0.46
   3 ?    6.9  13.3     0.005       7.5      13      78 ..     726     798 ..     717     808 .. 0.74
   4 ?   -2.9  13.7       5.3   7.9e+03      22      91 ..     821     891 ..     805     893 .. 0.72
   5 ?    3.7  12.4     0.048        71      15      89 ..     874     942 ..     869     953 .. 0.64
   6 ?   15.7   0.6   9.3e-06     0.014      21     102 ..    1038    1115 ..    1019    1130 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0078
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS..-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  24 lekkfkklqaeleakekelqklqeelqkkakkl.ekeekeqelqkkeqelqqkqqqkaqelqkkqqellkpildkinkaikevak 107
                 +++++ +  ae+++ ++el++ ++ ++k++++l  ++++     k  ++++++ +qk+  + +k + l+  + +ki+ ++++v k
  KKY14283.1 267 FQETIDEATAEIQRHQEELKEHRRSIEKYEQTLdHTKKEHARTVKDANRVERAIKQKESSIYEKTNSLVP-VDEKIEVTTQKVKK 350
                 5777889999999999999999999999999974433333337777777777788888888888877665.99999999999987 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  27 kfkklqaeleakekelqklqeelqkkakkl.e....keekeqelqkkeqelqqkqqqkaqelqkkqqellkpildkinkaikevak 107
                  +++ + ++e+++  l++ + +l++k+ ++ +    k+++  el++  + l++ ++++ + l +++  + + +  ++++ ++eva 
  KKY14283.1 433 LQTAKEGTVESLKSRLDEYEYQLKAKELESrNiehlKADRTAELKQTSRSLEE-KKKEVNTLSSERTRVAQ-LRTELDEKLAEVAN 516
                 44444444444444444444444433333322455655555554444444444.22222333333322222.23333333333322 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.005
                 HSHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHH CS
        OmpH  13 espegkaaqeqlekkf...kklqaeleakekelqklqeelqkkakkl.e....keekeqelqkkeqelqqkqqq 78 
                 + pe ++a+++l+  +   k+ ++e++a+ k+lq++++e + + ++l e     ++++ el+ +++e+q+ +q 
  KKY14283.1 726 QAPEEERAKAELDVLAdksKRDKEEVDALSKNLQSKKKEVEFARQQLqEikpkYAKEQGELNSLNEEIQE-FQD 798
                 5666666666655444444999999999999999999999877777766877777777779999999999.444 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 5.3
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS..-HHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHH CS
        OmpH  22 eqlekkfkklqaeleakekelqklqeelqkkakkl.ekeekeqelqkkeqelqqkqqqka...qelqkkqqell 91 
                  q+e+ + +lq++ ++k+ e+++++ +++   ++l  ++++  + q++ + lq++ ++++    el +++++++
  KKY14283.1 821 RQYESSQGQLQQQAAQKRLEFTTQKSRID---NQLsFETQRLDATQNRITSLQNQISKDKayiDELSDQRNAIQ 891
                 489999999*****************997...443335666666666666666544444445588888887765 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.048
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  15 pegkaaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqe 89 
                  + ka  ++l ++++++q+el+ +++el++l e+l++      ++e   + +++++e ++++qq+ + +++  +e
  KKY14283.1 874 SKDKAYIDELSDQRNAIQEELDVLNAELEQLGEDLDE------RKEHVAAAAQLVAEARKQLQQNSKHVEETMKE 942
                 5567778899999999999999999999999999963......44444444455555555444444333333333 PP

  == domain 6  score: 15.7 bits;  conditional E-value: 9.3e-06
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS...........-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH   21 qeqlekkfkklqaeleakekelqklqeelqkkakkle..........keekeqelqkkeqelqqkqqqkaqelqkkqqellkpildkinkai 102 
                  +       +klq++++++ +el+k++ ++       +           + +e+e++  ++ +++ ++++++++q+k+ el+++    i + i
  KKY14283.1 1038 E-------QKLQDAIKSLTAELDKMAPNMR------AvdrldsteqkLRSAEKEYDHSRKTYRD-LREDFEDVQRKRSELFNRAFGHISENI 1115
                  2.......4555555555555555555443......1223334444456666668888888888.8888899*******9996444444333 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   4.9      0.69     1e+03     192     262 ..     178     251 ..     149     268 .. 0.64
   2 ?   -2.3  23.3       1.1   1.6e+03     165     261 ..     228     324 ..     187     356 .. 0.49
   3 ?    1.9  21.9     0.056        84     141     280 ..     268     381 ..     251     397 .. 0.41
   4 ?    1.9  28.0     0.055        82     146     290 ..     367     515 ..     358     521 .. 0.83
   5 ?   12.6  13.6   3.1e-05     0.046     179     285 ..     733     837 ..     697     857 .. 0.75
   6 ?   12.4  15.4   3.5e-05     0.052     150     251 ..     851     951 ..     840     959 .. 0.78
   7 ?    6.4   2.2    0.0024       3.5     167     239 ..    1036    1103 ..    1022    1123 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.69
        Spc7 192 elesidkeeLeelreela...elkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckg 262
                  ++s  +++L +l e+++   e kae++++k e +e  eq + + ++   l++++++++e+ +ea+++ ++  +
  KKY14283.1 178 AIASQSPKDLTKLIEQISgslEYKAEYDRLKLEAEEAAEQQTFQLNRRRGLNSEIKQYQEQKREADKYARKADE 251
                 44555555666666665533345666666666666666666666666666677777777777777666665544 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.1
        Spc7 165 ldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeck 261
                 l++  ++++e+k e  + ++k  e+ + + s    +L  ++e+++e+ aei+++++el+e ++ +e+ e++++++k++ +++ ++ ++ er +++++
  KKY14283.1 228 LNSEIKQYQEQKREADKYARKADERDQAVISHVLWKLYRFQETIDEATAEIQRHQEELKEHRRSIEKYEQTLDHTKKEHARTVKDANRVERAIKQKE 324
                 3333333344444444444444444444444445555555555555555555555555555555555555555554444444444444444444332 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.056
        Spc7 141 kegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieel 239
                 +e+++e  +++++ +e+L++++  ++++ + l                               +++e a+  ++ ++ ++ ++++++ + e+++++  +
  KKY14283.1 268 QETIDEATAEIQRHQEELKEHRRSIEKYEQTL-----------------------------DHTKKEHARTVKDANRVERAIKQKESSIYEKTNSLVPV 337
                 33444444444444444444444444444444.............................44444444444444444444444444444444444444 PP

        Spc7 240 keqkseleeeiaeaerv...leeckgwsesevsrlkeevkalee 280
                 +e+++ + ++++++      + ++k+ ++  v++l++  k++e+
  KKY14283.1 338 DEKIEVTTQKVKKSTARiaeITKEKDTQAAAVKQLQKDAKTVEK 381
                 44433333333333222000122333444444444444444443 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.055
        Spc7 146 enlegleedkelLekqeeeldellpeleeeka.ele....eeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieel 239
                   +++l++d++++ek +++ +   +++ +++  +l+    ++++kl+e++++ +s d+ ++ +l++  ++ + ++e++k +l+e + ql+++e +  ++
  KKY14283.1 367 AAVKQLQKDAKTVEKAQAQWEVEWQKTASKQGaTLNgadiQQYNKLKEEVNKRASADQIRVDNLKRLQTAKEGTVESLKSRLDEYEYQLKAKELESRNI 465
                 57899***************877777776665355455558999******************************************************* PP

        Spc7 240 keqkseleeeiaeaervleeckgwsesevsrlkeevkaleeltgwkivsls 290
                 +  k++  +e+++  r lee+k+ + + +s+ +++v +l  +++ k+ ++ 
  KKY14283.1 466 EHLKADRTAELKQTSRSLEEKKK-EVNTLSSERTRVAQLRTELDEKLAEVA 515
                 ******************98775.455566666677777666666665555 PP

  == domain 5  score: 12.6 bits;  conditional E-value: 3.1e-05
        Spc7 179 leeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeia..eaervleeckgwsesevsrlkeev 275
                  ++el+ l    ++ ++ dkee+ +l ++l++ k+e+e  +++l+e + + ++ + ++++l+e+++e++++++  e e + + c+++  +++++++++ 
  KKY14283.1 733 AKAELDVL----ADKSKRDKEEVDALSKNLQSKKKEVEFARQQLQEIKPKYAKEQGELNSLNEEIQEFQDAVSgiEDEIFSDFCQRVGIDDIRQYESSQ 827
                 22222222....2334579****************************************************994455667899***************9 PP

        Spc7 276 kaleeltgwk 285
                  +l+++   k
  KKY14283.1 828 GQLQQQAAQK 837
                 9999987655 PP

  == domain 6  score: 12.4 bits;  conditional E-value: 3.5e-05
        Spc7 150 gleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkselee 248
                 +l  + ++L++ ++ +++l +++++ ka + e l ++++a +e  ++ ++eLe+l e+l+e k+ +++  + +ae ++ql++ ++ +ee+ ++++e+e 
  KKY14283.1 851 QLSFETQRLDATQNRITSLQNQISKDKAYIDE-LSDQRNAIQEELDVLNAELEQLGEDLDERKEHVAAAAQLVAEARKQLQQNSKHVEETMKEIAEYEG 948
                 56667788899999999999999988888865.445555555545666889999999999999999999999999999999999999999999988887 PP

        Spc7 249 eia 251
                 +++
  KKY14283.1 949 DVQ 951
                 766 PP

  == domain 7  score: 6.4 bits;  conditional E-value: 0.0024
        Spc7  167 ellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieel 239 
                   + ++l+   ++l++el+k+    +       ++L ++ ++l+++++e+++ +k + +l+e+ e+++ k +el
  KKY14283.1 1036 VIEQKLQDAIKSLTAELDKMAPNMRA-----VDRLDSTEQKLRSAEKEYDHSRKTYRDLREDFEDVQRKRSEL 1103
                  45556666666666666665553333.....556778888888888888888888888888888887776655 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4  38.3   7.8e-06     0.012       2     270 ..       3     517 ..       3     566 .. 0.76
   2 ?   -3.3  21.8       3.6   5.5e+03      67     298 ..     697     954 ..     654     977 .. 0.51
   3 ?    3.0   1.3     0.046        69     201     270 ..    1005    1074 ..     997    1121 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.8e-06
      AAA_15   2 kIkkikikNFRslkdveidlsee..ltvliGkNnsGKSsilealdlFlnnkekkn............................................ 54 
                 k+ ++++ NF+s+k  +i l  +  +t +iG+N+sGKS+ ++a+ + l  k+++                                             
  KKY14283.1   3 KLVRLELYNFKSYKGHHILLFGDayFTSIIGPNGSGKSNSMDAISFVLGIKSSHLrsthlrdlvyrgrvlkiskinedgsatvdgaedeadgatqestq 101
                 57789999*******8887765568************************997777999***************************************** PP

      AAA_15  55 ...................................................................................kkvikiekedleifen 70 
                                                                                                    k+ +k+ ++     e+
  KKY14283.1 102 ngaterhdpksawvmavyeddagdeqqwkrtitsqgvseyrinnrpvtahqynealesenilikarnflvfqgdveaiasqspKDLTKLIEQISGSLEY 200
                 ************************************999999999999999999999999999999999999999999999998888888888888888 PP

      AAA_15  71 iseskdikIdvef.............................................................aek.ekakeyektlkskekkkadll 107
                 ++e  ++k++ e+                                                                  ++ ++e  ++++ ++k++  
  KKY14283.1 201 KAEYDRLKLEAEEaaeqqtfqlnrrrglnseikqyqeqkreadkyarkaderdqavishvlwklyrfqetideaT-AeIQRHQEELKEHRRSIEKYEQT 298
                 8888888888888****************************************************9999887542.15677777778888888888888 PP

      AAA_15 108 lkkkesdlkktikdkklklkknelsdekisvekkks.......kkelpkekeeklekekeelkidkedlkklikkleeslkkee............... 184
                 l+++++++  t+kd +       ++++  s+++k +       k e  + k +k++ +++e+ ++k+++    k+l++  k  e               
  KKY14283.1 299 LDHTKKEHARTVKDANRVER--AIKQKESSIYEKTNslvpvdeKIEVTTQKVKKSTARIAEITKEKDTQAAAVKQLQKDAKTVEkaqaqwevewqktas 395
                 88888888888888766543..333333333333333566666888888888889999999988888888888888887777779999**********9 PP

      AAA_15 185 ...................elknvlksaiiklllisakRnvsdedsekkssllgklkekileealqekl....eeelteklkeiqeklkeidkklaeel 260
                                    e+++  ++ +i ++  +  +++++ + e+ +s l++  ++++ + l+++     + + t +lk++  +l+e++k++++  
  KKY14283.1 396 kqgatlngadiqqynklkeEVNKRASADQIRVDNLKRLQTAKEGTVESLKSRLDEYEYQLKAKELESRNiehlKADRTAELKQTSRSLEEKKKEVNTLS 494
                 999999999998888877755555555555555555555555555555555555555555444443333666655555555555555555555554444 PP

      AAA_15 261 k.............kilkkkidk 270
                 +             ++l +  +k
  KKY14283.1 495 SertrvaqlrteldEKLAEVANK 517
                 44445666664444222222222 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.6
      AAA_15  67 ifeniseskdikIdvef..................aekekakeyektlkskekkkadlllkkkesdlkktikdkklklkknelsdekisvekkkskkel 147
                 ++++++ ++ i+++ +                   +   ka+ ++ + ksk++k+       + ++l+k +++kk +++  + + + i+ +  k+  el
  KKY14283.1 697 KWDDTEVENLIRLKDKLladfaslpkahrqapeeeR--AKAELDVLADKSKRDKE-------EVDALSKNLQSKKKEVEFARQQLQEIKPKYAKEQGEL 786
                 566666666667776666665555555544432210..22222222222222221.......2233333333333333333333344444444445555 PP

      AAA_15 148 pkekeeklekekeelkidkedlkklikkleeslkkee.................elknvlksaiiklllisakRnvsdedsekkssllgklkekileea 229
                 ++++ee +e +++   i++e+  +  ++                          +  ++  ++ ++   i ++ ++++++ + +++ +++l+++i++++
  KKY14283.1 787 NSLNEEIQEFQDAVSGIEDEIFSDFCQR--------VgiddirqyessqgqlqqQAAQKRLEFTTQKSRIDNQLSFETQRLDATQNRITSLQNQISKDK 877
                 5555555555555555554444333332........022223333344445544333334444444444455556666777777777777777777765 PP

      AAA_15 230 lqekl......eeelteklkeiqeklkeidkklaeelk......kilkkkidkikkfnykgkkneeieik..ddeelplnknG 298
                 ++         +  ++e+l+ ++ +l+++ ++l+e+++      +     + +  k   +++k +e ++k   ++e ++ + G
  KKY14283.1 878 AY--IdelsdqRNAIQEELDVLNAELEQLGEDLDERKEhvaaaaQ----LVAEARKQLQQNSKHVEETMKeiAEYEGDVQRTG 954
                 44..13366666666777777777777777777666667744430....3333332222233333323333433333333333 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.046
      AAA_15  201 sakRnvsdedsekkssllgklkekileealqekleeelteklkeiqeklkeidkklaeelk.kilkkkidk 270 
                  sa+R ++ ed+   ++ +g+l+++++e+  +e  e++l++++k++  +l+++  ++ +    ++ ++k+ +
  KKY14283.1 1005 SAVRAIKVEDYGI-KPDFGALDDELKEDEDEEVIEQKLQDAIKSLTAELDKMAPNMRAVDRlDSTEQKLRS 1074
                  6777777776655.888999999999986666668888888888888888877776433334333333333 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00076       1.1      14      33 ..      29      48 ..      24     140 .. 0.83
   2 ?   -0.2   3.7      0.89   1.3e+03      36     114 ..     745     830 ..     734     853 .. 0.56
   3 ?    6.0   0.0     0.011        16      49     134 ..    1096    1195 ..    1032    1198 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00076
                EEEEESTTSSHHHHHHHHTT CS
                xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllag 33
                + i+G+nG+GKS  + +++ 
  KKY14283.1 29 TSIIGPNGSGKSNSMDAISF 48
                68**********99999875 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.89
                 --SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS.--S-TTSBHHHH...................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HH CS
                 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx.xxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  36 kpteGeilldgkdlke..qeleslrkeigvlpqe.pqlfpeltvren...................esdeeiekalsklglkelkdtvvksspssLSgG 112
                 k +++e+       +   ++l+s +ke+++  q+ ++++p++ ++e+                    +de ++++ +++g++++++       ++ S+G
  KKY14283.1 745 KRDKEEV-------DAlsKNLQSKKKEVEFARQQlQEIKPKY-AKEQgelnslneeiqefqdavsgIEDEIFSDFCQRVGIDDIRQ-------YESSQG 828
                 4444444.......2233677778888888888855666666.7777788766533333333333322222333333333333222.......444555 PP

                 HH CS
                 xx RF
    ABC_tran 113 qk 114
                 q 
  KKY14283.1 829 QL 830
                 54 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.011
                  GGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH...........HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHH....HTSSE CS
                  xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxx RF
    ABC_tran   49 lkeqeleslrkeigvlpqe.pqlfpeltvren...........esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarall....kkpkl 129 
                  +++++ e +++ +g ++++ + + ++lt   n           e+++e+  +l+ ++ + ++  +  +++++LSgG+k + ala +++    + +++
  KKY14283.1 1096 VQRKRSELFNRAFGHISENiAPIYRDLTKSANyplggqayldiEDSDEP--YLDGIKYHAMPPLKRFRDMEHLSGGEKTMAALALLFAihsfQPSPF 1190
                  4444445555555555555444444444444467777666644333332..33333333322222224669**********9998775111155667 PP

                  EEEES CS
                  xxxxx RF
    ABC_tran  130 lllDE 134 
                  ++lDE
  KKY14283.1 1191 FVLDE 1195
                  77776 PP

>> TMP_2  Prophage tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   6.3    0.0016       2.4      86     188 ..     319     422 ..     313     436 .. 0.84
   2 ?    0.2   0.2      0.33     5e+02     112     144 ..     898     930 ..     865     955 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0016
       TMP_2  86 AyykgakearefnkaliltGnaaGlTasqLeamaesiaeaggtqaaaaealaalastGkiggeqlervakaaaelekatGqsvdet.akelaklakdPv 183
                 A+ + +++  e +++l+   +++ +T++++++ +++iae+++   + a+a+++l + +k+ +++ ++      ++++  G +++ + +++++kl+++  
  KKY14283.1 319 AIKQKESSIYEKTNSLVPVDEKIEVTTQKVKKSTARIAEITKEKDTQAAAVKQLQKDAKTVEKAQAQWEVEWQKTASKQGATLNGAdIQQYNKLKEEVN 417
                 78899999**********************************888888889999888888888888887777777777888876544899999999988 PP

       TMP_2 184 kaaek 188
                 k a++
  KKY14283.1 418 KRASA 422
                 87765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.33
       TMP_2 112 asqLeamaesiaeaggtqaaaaealaalastGk 144
                  ++Le++ e ++e  + +aaaa+++a+  +  +
  KKY14283.1 898 NAELEQLGEDLDERKEHVAAAAQLVAEARKQLQ 930
                 445555555555555544444444443322222 PP

>> DUF1474  Protein of unknown function (DUF1474)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.3    0.0019       2.8      42      92 ..     273     323 ..     250     330 .. 0.85
   2 ?   -1.9   0.0       3.4     5e+03      15      54 ..     789     827 ..     783     866 .. 0.66
   3 ?    1.1   0.1      0.38   5.7e+02      54      88 ..     883     917 ..     861     928 .. 0.80
   4 ?    0.5   0.1       0.6     9e+02      10      34 ..    1032    1056 ..    1027    1091 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0019
     DUF1474  42 kskeevlkyGykynehriyieqlidllymylkeldkkldefkdiekassak 92 
                  +  e++++  + +ehr+ ie++ + l    ke  + +++ + +e+a   k
  KKY14283.1 273 EATAEIQRHQEELKEHRRSIEKYEQTLDHTKKEHARTVKDANRVERAIKQK 323
                 56789***********************99999999999999999986655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.4
     DUF1474  15 ikekledvvstfswfidevfttdsgrlkskeevlkyGyky 54 
                 + e +++   + s ++de+f+    +    +++++y    
  KKY14283.1 789 LNEEIQEFQDAVSGIEDEIFSD-FCQRVGIDDIRQYESSQ 827
                 5566666666666777888864.46777777777776554 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.38
     DUF1474  54 ynehriyieqlidllymylkeldkkldefkdieka 88 
                   + r  i++ +d+l+  l++l + lde k+   a
  KKY14283.1 883 LSDQRNAIQEELDVLNAELEQLGEDLDERKEHVAA 917
                 46789999999***************998875544 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.6
     DUF1474   10 eeveiikekledvvstfswfidevf 34  
                  e+ e+i +kl+d++ + +   d++ 
  KKY14283.1 1032 EDEEVIEQKLQDAIKSLTAELDKMA 1056
                  6779999999999988776666553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3175  (0.177087); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                       191  (0.0106531); expected 17.9 (0.001)
Passed Fwd filter:                       109  (0.00607954); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 2.81u 0.44s 00:00:03.25 Elapsed: 00:00:00.77
# Mc/sec: 4969.21
//
Query:       KKY14284.1  [L=493]
Description: putative aspartyl aminopeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.3e-154  512.9   0.0   1.6e-153  511.6   0.0    1.6  1  Peptidase_M18  Aminopeptidase I zinc metalloprotease (M18)


Domain annotation for each model (and alignments):
>> Peptidase_M18  Aminopeptidase I zinc metalloprotease (M18)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  511.6   0.0  8.9e-158  1.6e-153      29     432 .]      27     480 ..      16     480 .. 0.91

  Alignments for each domain:
  == domain 1  score: 511.6 bits;  conditional E-value: 8.9e-158
                    TTS-ST..STTCEEEEEEETTTEEEEEEEETTS-GGG--EEEEEE---SEEEEECCEEEEETTEEEEEEEEESS.SSGGGTT--EEEEEEEEECTT CS
  Peptidase_M18  29 ekekwk..iepggkyfvtrngssliAFavgkkykaengfsiigaHtDsptlrvKpkskkkaegylqvgvetYGggiwetWldrdLsvaGrvlvkkk 122
                    eke w+   +pggky +trngs+++AFavgkk++++n++s+igaHtDsptlr+Kp skk+ +g+lqvgvetYGgg w+tW+drdL++aGrv+vk+ 
     KKY14284.1  27 EKEPWSstCKPGGKYVLTRNGSTIVAFAVGKKWRPGNPVSMIGAHTDSPTLRLKPVSKKEGSGFLQVGVETYGGGLWHTWFDRDLGLAGRVMVKDG 122
                    899999867**************************************************************************************9 PP

                    --EEEEEECCSTT---BBB----GGG-GG..GSS--TTTTTSEEEEEEEE........------TTCCC.......................T.CC CS
  Peptidase_M18 123 keekleaklvnierPvlriPnlaiHLdrdineefkfneetelepilglae........eeeeekedkek.......................knkh 187
                     ++ +++klv+i++P+lriP+laiH++r+  e+f+fn++++l pi gl++                  k                        ++h
     KKY14284.1 123 -KGSIIQKLVHINKPILRIPTLAIHFERQ--EKFEFNKQDQLFPIAGLIAaelkrqdeI---------KatngnketttptstedfaplkavTQRH 206
                    .699************************9..8****************99665543220.........11223355778888888888866559** PP

                    HHHHHHHHHHHHTS-CCCCCCCEEEEEE-S--EEETTTT-EEEESSHHHHHHHHHHHHHHCCCCHT..-TTTS-SEEEEEEESSCCGTS-STTSGG CS
  Peptidase_M18 188 kkalleliaeelgvevedivdlelilvdaqkakivGiekeflfaprlDnkvscfaaleallesaed..sleeedkvrivalfDnEEvGStsaqGad 281
                    +++++elia+ +  +++d+vd+e+il+d+qk+ ++G+++ef+f++rlDn+ s+++a  +++es +d   lee++++r++a+fDnEE+GSt+ qGad
     KKY14284.1 207 HSHIVELIAKDADASPDDVVDFEVILFDTQKSCLGGLQDEFIFSARLDNLNSTYCATIGMIESVSDpaALEEDSTIRLIACFDNEEIGSTTTQGAD 302
                    *****************************************************************9999*************************** PP

                    CTHHHHHHHHHHHHHCSTT.......-HCHHHH...........HC-EEEEE--EE---TTSGGGS-TTTS--TTSEEEEEEETTSSSTT-HHHHH CS
  Peptidase_M18 282 snfleevlerisialkkse.......afeeavl...........akSlliSaDvahaihPnysskheenhapllnkGvvikvnanqryatnsagaa 359
                    s++l+++++r+s+  +++         ++++v            a S+l+SaD+ah ++Pny+ k+e++h+p++nkG+vik+nan ry+tns g+a
     KKY14284.1 303 SHMLPAIIRRLSVLPSSHFedgesekSYDKTVEadvstafeqtlASSFLVSADMAHSVNPNYAGKYEPDHRPEMNKGPVIKINANARYTTNSPGIA 398
                    ***********9876543333334452333333555677778889*************************************************** PP

                    HHHHHHHHHC.........-EEEEEEE-TTS----HCHHHHHHHHT-EEEEEE-EEBSTTSSSEEEECCHHHHHHHHHHHCC CS
  Peptidase_M18 360 llkevaqkan.........vklQelvvrndspcGstigpilaaktGirtiDlGaaqlsmHSireltgskdveeavklfkaFf 432
                    l++eva+ka          v+lQ +v+rnds cGstigp+++ak+G+r +DlG++qlsmHSire+ g++dv +a+ lfk+Ff
     KKY14284.1 399 LIQEVAKKAApltkddergVPLQLFVIRNDSLCGSTIGPMISAKLGVRALDLGNPQLSMHSIRETGGTEDVGYAIRLFKSFF 480
                    ********98899999999**************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.49
# Mc/sec: 3019.62
//
Query:       KKY14285.1  [L=321]
Description: putative 4-nitrophenylphosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-25   88.7   0.0    4.1e-25   87.8   0.0    1.5  1  Hydrolase_6     Haloacid dehalogenase-like hydrolase
    2.3e-15   56.4   0.0    4.1e-15   55.6   0.0    1.4  1  Hydrolase_like  HAD-hyrolase-like
    1.8e-07   31.7   0.1    2.3e-06   28.0   0.1    2.5  1  Hydrolase       haloacid dehalogenase-like hydrolase
     0.0029   17.7   0.2      0.022   14.8   0.0    2.4  4  HAD_2           Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.0   9.2e-29   4.1e-25       1      99 [.      24     140 ..      24     142 .. 0.94

  Alignments for each domain:
  == domain 1  score: 87.8 bits;  conditional E-value: 9.2e-29
                  EEEESTTTSEETTEE-TTHHHHHHHHHHTT..............-EEEEEE---SS-HHHHHHHHHHTT----GGGEEEHHHHHHHHHHHH....SXX CS
  Hydrolase_6   1 flfDidGvLwrgdkaipgaaealnalraag..............kpvvllTNnsskseeeyakkleklgvditeeqvvtsataaaeylkkr....kad 80 
                  flfD+dGvLw gd+++pg +e+l+ lr++g              k+++++TNns+ks+ ey kkl+ lg++ t e+++ sa++ a y++++     ++
   KKY14285.1  24 FLFDCDGVLWSGDHLFPGTVETLELLRSKGlrivpdqhgsvlpgKQTIFVTNNSTKSRAEYRKKLTGLGIPCTVEEIFGSAYSSAVYISRIlqlpANK 121
                  89******************************************************************************99999999997444456* PP

                  XEEEEESXHHHHHHHHHTT CS
  Hydrolase_6  81 kkvlvigeeglreelkeag 99 
                  kkv+++ge g+++el + +
   KKY14285.1 122 KKVFILGEAGIEAELASEN 140
                  **************98765 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0     9e-19   4.1e-15       2      75 .]     243     317 ..     242     317 .. 0.95

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 9e-19
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EE.EEESSSSS-TTTHHHHHHHHT---SEEES- CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwks.vLVltGvtrpedleepehkptyvaddlaea 75 
                     lgKP++ m+d++  +++ d+++++m+GDr++tDi+++ + ++ + ++VltGv+++e+  +   +p +++d+l ++
      KKY14285.1 243 LGKPSQAMMDAIEGKFHFDRARTCMVGDRMNTDIQFGIKGKLGGtLAVLTGVSTKEEFTTGDMRPSAYVDTLSDL 317
                     7****************************************986599**********999999********9985 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.1   5.1e-10   2.3e-06       2     206 ..      22     279 ..      21     282 .. 0.70

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 5.1e-10
                 SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHH...............HHCHHHHHHHHHHHHH...HHHHHHHHHETTTE..............H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx..............x RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsaalalaaaletg...............sehpigkalvaaakar...sgaltgfatfigrg..............a 68 
                 ++++fD+dG+L+ g +    +++ ++l +++ l+++                +   +k  +++ k++   +                           a
  KKY14285.1  22 DVFLFDCDGVLWSGDHLFPGTVETLELLRSKGLRIVpdqhgsvlpgkqtifVTNNSTKSRAEYRKKLtglG------------IpctveeifgsayssA 108
                 789************66666666665557888888866666555554433322222222233333333332............0333333333445557 PP

                 HHHTHHHHHHHH.HCHHHHHHHHHHHHHHCHHHHHH...........................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEE CS
                 xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx...........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  69 yaigkpewltal.dippdlgaaigsaqsqgrtvall...........................qaralavftiadplkvkpeaaeavasLkaagievvl 139
                 + i +   l a+ +    lg+a  +a+ + + v +l                           + ++  v+   d +  + ++   +++ +  g   +l
  KKY14285.1 109 VYISRILQLPANkKKVFILGEAGIEAELASENVPFLggsdpkyrrditpedyrliassdpsliDPEVGVVLCGLDFHVNYLKLSLGFHYVRFHGA-QFL 206
                 777777777777444444444444444444444444899999999998888889999999998889999999999999999999999**999999.9** PP

                 EESSEHHHHH.HHHHH.TT..GGGE.SEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHH.HHHHH CS
                 xxxxxxxxxx.xxxxx.xx..xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
   Hydrolase 140 ltgdnpetae.raanq.lG..ddyf.daviasdietvakpspegkvaaireLqgkpeevamVGDgvn.Daaal 206
                 +t+ +++ ++ r+    +G    +  +  ++++ ++ +kps+ ++ a+  ++  + ++++mVGD++n D++++
  KKY14285.1 207 ATNIDSTLPNsRTFFPgAGatTTAPlAKALGTEPVALGKPSQAMMDAIEGKFHFDRARTCMVGDRMNtDIQFG 279
                 ***999888877777778876333346666677777**********************************986 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.81   3.6e+03       2      11 ..      25      34 ..      24      44 .. 0.84
   2 ?   -1.2   0.0      0.42   1.9e+03      80      97 ..      38      55 ..      35      61 .. 0.89
   3 ?   -3.0   0.0       1.5   6.6e+03     102     127 ..      77     102 ..      67     112 .. 0.70
   4 !   14.8   0.0     5e-06     0.022     124     168 ..     234     279 ..     227     284 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.81
       HAD_2  2 iFDlDgTlld 11
                +FD Dg+l  
  KKY14285.1 25 LFDCDGVLWS 34
                8******975 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.42
       HAD_2 80 pydgvkelLeeLkeagyk 97
                +++g  e+Le L+++g++
  KKY14285.1 38 LFPGTVETLELLRSKGLR 55
                79**********999986 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.5
       HAD_2 102 TsksreaveekleqlgiesyFdvivt 127
                 ++ksr++ ++kl+ lgi    + i +
  KKY14285.1  77 STKSRAEYRKKLTGLGIPCTVEEIFG 102
                 45667777777777777666666555 PP

  == domain 4  score: 14.8 bits;  conditional E-value: 5e-06
       HAD_2 124 vivtsedvekkKPdpeviekaleklklkkeeviyvGDsp.tDieaa 168
                 + +++e v   KP+++++ ++  k++++++++ +vGD   tDi+ +
  KKY14285.1 234 KALGTEPVALGKPSQAMMDAIEGKFHFDRARTCMVGDRMnTDIQFG 279
                 6688999999****************************99***965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2163.21
//
Query:       KKY14286.1  [L=334]
Description: hypothetical protein UCRPC4_g06819 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-07   30.2   0.0     0.0079   16.8   0.0    2.4  2  NAD_binding_1  Oxidoreductase NAD-binding domain
    7.8e-05   22.8   0.0     0.0008   19.6   0.0    2.0  1  NAD_binding_6  Ferric reductase NAD binding domain
  ------ inclusion threshold ------
      0.065   13.6   0.0       0.12   12.7   0.0    1.4  1  FAD_binding_6  Oxidoreductase FAD-binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.3e-06    0.0079       1      36 [.     157     192 ..     157     210 .. 0.92
   2 !   11.1   0.0   7.8e-05      0.46      82     107 ..     284     313 ..     274     315 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.3e-06
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESS CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrt 36 
                    +iagG+Gi P++s++ a+ e ++ ++ v ++y +r 
     KKY14286.1 157 FIAGGVGINPLMSMISALSESSSWPRTVRIFYSIRL 192
                    7********************9999*******9885 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 7.8e-05
                    HHHHHH....HSSTTEEEEEECSHHHHHHH CS
  NAD_binding_1  82 leells....lkkeethvyvCGppgMikav 107
                    ++e+++     +k+++ vyvCGp+ M + +
     KKY14286.1 284 IREAIGgdneEEKKDAVVYVCGPRDMTDEI 313
                    444444455558999***********8765 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.3e-07    0.0008       5     151 ..     156     313 ..     152     316 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.3e-07
                    xxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxx RF
  NAD_binding_6   5 llvagGiGitpfisilkdllkksk..................kealktkkikliwvvressslewfkdvLneleeekse......gnieihiYlTs 76 
                    +++agG+Gi p++s++  l + s+                  + + + +k++ +  +r+ +s+  f+  Ln+l +  +       ++i+ +  +T+
     KKY14286.1 156 VFIAGGVGINPLMSMISALSESSSwprtvrifysirlptsshQDPNDSNKLT-VTPTRSLGSILFFT-RLNSLVRDAKAwdsegvNDIKFKLLVTG 249
                    89**********************9999999999999998543344444443.45699999999998.7777766655555568889999999999 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6  77 eyeaedasdqlissiegenseslkqgvdavsgtrnvkihfg.RPnlkevlkdi..askhknssvgvfvCGppklvkev 151
                    +++ + a+  ++ +           g  +++++  + + +g R  ++e+ + i   ++++++   v+vCGp+ +++e+
     KKY14286.1 250 SSTTKGARL-SEDM----------AG--SLTPSL-ADVVYGrRIQWEEIREAIggDNEEEKKDAVVYVCGPRDMTDEI 313
                    999888865.2222..........22..344555.889999899999999999999999999************9986 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     2e-05      0.12       4      56 ..      36      86 ..      33      91 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2e-05
                   EEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEECETTCCEEEEEE.BSS CS
  FAD_binding_6  4 ltekeevsedtrifrfklpsekqklglpvGqhvflrlkikgeaviRsYtpiss 56
                   +++ ++v +d+ri+++klp ++  ++  +Gq++ ++++  g + i  +t++s 
     KKY14286.1 36 VSDIKTVGDDIRIIHLKLPFDSPPIHHKAGQWLDVHIP--GVQEIGGFTITSP 86
                   788999*************************9999998..5556777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2280.81
//
Query:       KKY14295.1  [L=740]
Description: putative g2-specific protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.9e-47  160.0   4.1    8.2e-47  159.8   0.2    2.4  2  Pkinase      Protein kinase domain
    4.6e-30  104.8   0.1    1.5e-19   70.3   0.0    2.5  3  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.8   0.2   9.2e-51   8.2e-47       1     264 []      12     285 ..      12     285 .. 0.85
   2 ?   -4.2   0.5      0.98   8.7e+03      28      56 ..     320     348 ..     301     354 .. 0.60

  Alignments for each domain:
  == domain 1  score: 159.8 bits;  conditional E-value: 9.2e-51
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEE..EEEESSEEEEEEE--TTEBHHHHHH...HHSS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlye..vfeekdelylvleyveggeladlle...rkgs 94 
                 y +le +G+GsfG + k+++k++g+i + K+i+ +k+  k+++++++E +il +l+h+niv++y+   +++++ely+ +ey+ gg+l  +++    +g 
  KKY14295.1  12 YDVLEVIGRGSFGIIRKVRRKNDGHILCRKEIAYQKMAAKEREQLAAEFNILSSLNHMNIVQYYHreHLKTTQELYIYMEYCGGGDLGGVIKglkSSGE 110
                 67899**********************************************************962267789**************9999998874444 PP

                 .--HHHHHHHHHHHHHHHHHHHHTT..........EE-SS-SGGG......EEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSH CS
     Pkinase  95 .lseeeakkiakqilegleylHskg..........iiHrDlKpeN......iLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneysk 176
                   +ee + +i++qi+e+l  +H                r lK +       +++ e++ +K++DFGl+k ++s+  ++++vgt+ Y++PE+  +++y++
  KKY14295.1 111 yATEEFVWRIFAQIVEALYRCHYGVdapeagsdlgRATRELKRQQamgpvrVFLGEDQSVKLGDFGLSKLMQSHDFASTYVGTPFYMSPEICAAERYTS 209
                 37788888**************6544566777777889999977523333377888999**************************************** PP

                 HHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS.-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 177 kvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei.seeakdllkkllkkdpkkRltaeellqhpyl 264
                 ++D+WslG+i+yel t++ppf+++++ + v+++              k +++e  ++ s+++k+++ ++lk++p +R+  ++ll  py+
  KKY14295.1 210 HSDIWSLGCIMYELCTREPPFNAKTHLQLVQRIR-------------KGDFKELPDCySKDLKNVIASCLKVNPLHRPDTASLLTVPYV 285
                 **********************444444222222.............23455544444***********************99999885 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 0.98
                 EEEEEECHCHCHHHHHHHHHHHHHHHHHS CS
     Pkinase  28 AvKkikkekakkkkekkvlrEikilkklk 56 
                 A  + ++ +++++ e +v+rE ++ ++l+
  KKY14295.1 320 AAIEADRAQMREEIEATVRREWEVKARLE 348
                 33344445555555577777777777766 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.1     1e-11   9.2e-08       4      94 ..      15     104 ..      12     131 .. 0.77
   2 !   70.3   0.0   1.7e-23   1.5e-19     134     255 ..     162     279 ..     157     282 .. 0.90
   3 ?   -2.8   0.0      0.35   3.1e+03      88     121 ..     329     362 ..     316     363 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1e-11
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtl.keeateeekeelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkfLrk 94 
                   + +G+G+fG + + + k    ++      K +  +++ ++e+e+l  e +i+++l+h niv+++       +++l+i +ey+ gGdL   ++ 
   KKY14295.1  15 LEVIGRGSFGIIRKVRRK----NDGHILCRKEIaYQKMAAKEREQLAAEFNILSSLNHMNIVQYYHREHlkTTQELYIYMEYCGGGDLGGVIKG 104
                  689**********99999....33333334444256667778999********************9776658889*************877664 PP

  == domain 2  score: 70.3 bits;  conditional E-value: 1.7e-23
                  EEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSB CS
  Pkinase_Tyr 134 vLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcp 231
                  v+l e++ vk++DfGL++ ++++d     ++      +m+pE+  ++++ts+sD+Ws G +++E++t  e p++  ++ ++++++++g   e p+  +
   KKY14295.1 162 VFLGEDQSVKLGDFGLSKLMQSHDFA---STYVGTPFYMSPEICAAERYTSHSDIWSLGCIMYELCT-REPPFNAKTHLQLVQRIRKGDFKELPDCYS 255
                  78999*************99444443...34445567******************************.899*************************** PP

                  HHHHHHHHHHT-SSGGGS--HHHH CS
  Pkinase_Tyr 232 eelyelmkkcweedpeeRptfsel 255
                  ++l++++ +c++ +p +Rp+ ++l
   KKY14295.1 256 KDLKNVIASCLKVNPLHRPDTASL 279
                  *******************98876 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.35
                  HHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr  88 LlkfLrkkekekltlkdllsfalqvAkGmeyLes 121
                  +++ ++++ +++ ++k  l++  q+++G+e L +
   KKY14295.1 329 MREEIEATVRREWEVKARLEIDKQISAGLEKLRR 362
                  5555666677888999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       950  (0.0529868); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:00.49
# Mc/sec: 4529.69
//
Query:       KKY14296.1  [L=847]
Description: putative serine threonine-protein kinase sid2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-59  199.9   0.0    5.2e-58  196.5   0.0    2.2  1  Pkinase          Protein kinase domain
      1e-28  100.4   0.2    1.8e-19   70.1   0.1    2.2  2  Pkinase_Tyr      Protein tyrosine kinase
    7.6e-05   23.3   1.5    0.00019   22.0   0.3    2.3  2  Pkinase_C        Protein kinase C terminal domain
    0.00018   21.7   0.0    0.00045   20.4   0.0    1.6  1  Acetyltransf_1   Acetyltransferase (GNAT) family
     0.0014   18.0   0.4     0.0066   15.8   0.0    2.2  3  Kinase-like      Kinase-like
     0.0027   17.6   0.0     0.0057   16.6   0.0    1.5  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0032   17.8   0.3      0.008   16.6   0.3    1.6  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0034   17.3   3.0      0.086   12.7   0.1    3.5  4  APH              Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.039   13.3   0.0      0.089   12.1   0.0    1.5  1  Kdo              Lipopolysaccharide kinase (Kdo/WaaP) family
      0.056   12.4   0.0      0.089   11.7   0.0    1.3  1  Haspin_kinase    Haspin like kinase domain
       0.13   12.1   0.2       0.52   10.2   0.1    2.0  2  AbiJ_NTD5        AbiJ N-terminal domain 5


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.5   0.0   3.2e-61   5.2e-58       2     264 .]     444     747 ..     443     747 .. 0.94

  Alignments for each domain:
  == domain 1  score: 196.5 bits;  conditional E-value: 3.2e-61
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                 + l+++G+G++G+V+ a +k+t++  A+K+++k+   k +e +++l+E  il   k++ +v+l+++f++++++yl +eyv+gg++ +ll++ g+l +++
  KKY14296.1 444 QILTQVGQGGYGQVFLAQKKDTREVCALKVMSKKLLFKLDEiRHILTERDILTAAKSEWLVKLLYAFQDQSQIYLAMEYVPGGDFRTLLNNTGVLHNRH 542
                 67899*******************************999999********************************************************* PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS............................................. CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk............................................. 153
                 a+++++++++ ++ lH+ g iHrDlKpeN+Lid +g++K+tDFGla+ + s  k                                             
  KKY14296.1 543 ARFYIAEMFACVDSLHNLGYIHRDLKPENFLIDATGHVKLTDFGLAAGMLSPLKiesmrikleevgntpvpfgrtpvedrsvaerrqgyrslrrqdvny 641
                 *************************************************9999999******************************************* PP

                 BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCS CS
     Pkinase 154 ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkR 252
                 ++s+vg+++Y+APEvlk+ ey+ +vD+WslG++l+e l+g ppf+g + +e ++++l++    +++l++ + + + ++ +s+   dl+++l++ ++++ 
  KKY14296.1 642 AKSIVGSPDYMAPEVLKGDEYDFTVDYWSLGCMLFEALAGYPPFAGATVDE-TWQNLKR---WQRVLRKPQYD-DPNYFLSKRTWDLITRLVAAKEQRF 735
                 *********************************************777666.5555555...78999764443.445667*************999888 PP

                 TTHHHHHTSGGG CS
     Pkinase 253 ltaeellqhpyl 264
                   ++e+ +h+y+
  KKY14296.1 736 RNIQEIHKHEYF 747
                 89********98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.1   1.1e-22   1.8e-19       2     152 ..     444     590 ..     443     604 .. 0.88
   2 !   28.2   0.0   6.6e-10   1.1e-06     166     243 ..     646     722 ..     631     737 .. 0.86

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 1.1e-22
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekek 99 
                  ++ +++G+G +G+V+ ++ k+++e   +kV+ K+l    + +e +++l+e +i+++ k + +vkll +  +++++++ +eyv+gGd+++ L+++    
   KKY14296.1 444 QILTQVGQGGYGQVFLAQKKDTREVCALKVMSKKL--LFKLDEIRHILTERDILTAAKSEWLVKLLYAFQDQSQIYLAMEYVPGGDFRTLLNNT--GV 537
                  56789*************99444444444444444..45666789**********************************************997..88 PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEE CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLard 152
                  l+ ++   +++++ + ++ L++  ++Hrdl   N L++ + +vk++DfGLa  
   KKY14296.1 538 LHNRHARFYIAEMFACVDSLHNLGYIHRDLKPENFLIDATGHVKLTDFGLAAG 590
                  8888888899999999**********************************975 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 6.6e-10
                  TSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT- CS
  Pkinase_Tyr 166 klpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcwe 243
                    +  +mapE+lk  ++    D Ws G +l+E +  g  p++g +  e+ ++lk+ +r+ +  +  +  y l k+ w+
   KKY14296.1 646 VGSPDYMAPEVLKGDEYDFTVDYWSLGCMLFEALA-GYPPFAGATVDETWQNLKRWQRVLRKPQYDDPNYFLSKRTWD 722
                  45678*****************************9.******************999987777777777777777775 PP

>> Pkinase_C  Protein kinase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.4   3.9e+03      27      45 ..     320     357 ..     260     357 .. 0.69
   2 !   22.0   0.3   1.2e-07   0.00019       1      46 []     766     817 ..     766     817 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.4
   Pkinase_C  27 m...................pagspltssvqenFrGFt 45 
                                     +  s++++  q + rGFt
  KKY14296.1 320 SrfgkemglhqnpaaisrqeQYHSTDSRKTQTQLRGFT 357
                 24455555554444444444455667777778888887 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 1.2e-07
   Pkinase_C   1 vesdeDtsNFDpeFTeedprdtppddm.......pagspltssvqenFrGFtY 46 
                 ++s++D  +FD +FT+e  + ++++ +        + +++++     F+GFt+
  KKY14296.1 766 LDSETDAGYFD-DFTSEADMAKYKEVHdkqkaleEMAERDEKMGKGLFVGFTF 817
                 58*********.******999999999999999999999999999*******9 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.8e-07   0.00045      25      96 ..     103     180 ..      83     190 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.8e-07
                     HHH.HHSTTC..EEEE.EEETTEEEEEEEEEEEET...TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESE CS
  Acetyltransf_1  25 ees.fsleae..gllv.aeedgeliGfisllkipd...ekggvayieslaVspeyrgkGlGsaLlealeerareegikk 96 
                     +++ +s  ++  ++lv + e +e++G+  +          g  ++ie++aV+++ +gk lG + ++al   a++ g++k
      KKY14296.1 103 YDFmAS-RNDtyYILViCDESEEVVGTGAVIVERKfihGLGLIGHIEDIAVAKNQQGKKLGLRIIQALDYVAKSVGCYK 180
                     333222.333124444577779******8888888898557899*********************************65 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.9   3.1e+03      20      46 ..     449     475 ..     442     477 .. 0.86
   2 !   15.8   0.0   4.1e-06    0.0066     143     189 ..     541     586 ..     527     591 .. 0.92
   3 ?   -1.7   0.0      0.88   1.4e+03     227     254 ..     662     689 ..     658     710 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.9
  Kinase-like  20 lkkgdrsvvfevkdqetgeplavkvfl 46 
                  +++g+ + vf+++ + t e  a+kv +
   KKY14296.1 449 VGQGGYGQVFLAQKKDTREVCALKVMS 475
                  57788899***************9975 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 4.1e-06
  Kinase-like 143 tiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggft 189
                   +ar ++ +++   + +L+++g +h +++++n+l d  g ++l++f+
   KKY14296.1 541 RHARFYI-AEMFACVDSLHNLGYIHRDLKPENFLIDATGHVKLTDFG 586
                  6899999.899**********************************96 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.88
  Kinase-like 227 mthkldaWqlGlviyriwclklPltlat 254
                  + + +d W lG   +   + + P+  at
   KKY14296.1 662 YDFTVDYWSLGCMLFEALAGYPPFAGAT 689
                  67899*********99988888887765 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.5e-06    0.0057      27      77 ..     110     170 ..      92     180 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.5e-06
  Acetyltransf_10  27 eegealllvaeeggkivGviel.rdgs.........hisllfVdpeyrgqGigkaLleave 77 
                      ++  ++l++++e++++vG++++  +++         hi+ ++V+++++g+++g ++++a+ 
       KKY14296.1 110 NDTYYILVICDESEEVVGTGAViVERKfihglgligHIEDIAVAKNQQGKKLGLRIIQALD 170
                      378899**************99766668**************************9999886 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.3   4.9e-06     0.008       4      73 ..     114     183 ..     109     194 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.9e-06
                     EEEEEEET.TEEEEEEEEEEES.........TCTEEEEE-GGGTTSSHHHHHHHH....TTSEEEEEEEEETHHHHHHHHHHTT CS
  Acetyltransf_7   4 evfVaedd.gkivGfialslld.........aeitrlaVdpeyrgkGiGraLlea....aekgiileqlelnaekaikfYeklG 73 
                     +++V+ d+ +++vG+ a+ ++          ++i+ +aV+++ +gk +G ++++a    a              k+++ Y+ +G
      KKY14296.1 114 YILVICDEsEEVVGTGAVIVERkfihglgliGHIEDIAVAKNQQGKKLGLRIIQAldyvA--------------KSVGCYKNHG 183
                     455665665888898887777788999887777777******************822221..............3455555555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.28   4.5e+02     117     173 ..     379     443 ..     330     445 .. 0.62
   2 ?    2.7   0.0      0.06        98       6     106 ..     450     558 ..     446     561 .. 0.52
   3 !   12.7   0.1   5.3e-05     0.086     152     196 ..     546     588 ..     532     591 .. 0.79
   4 ?   -1.2   0.0      0.96   1.6e+03     103     104 ..     705     730 ..     621     803 .. 0.54

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.28
                 SHHCHTCCHHHHHHCHHHCCCGCCTCC...........HHHHHHHHHHHHHHHH--SSS-EEEE-SS- CS
         APH 117 dflaqdlellrqlesatarllaselld...........lleeleeqvlaalaallpgelptvllHgDl 173
                 +fl+ + +ll ++++++ r   ++++            ++e + +  l + +a+l+   +t+l HgD+
  KKY14296.1 379 YFLDYYFDLLSYVHNRQTRE--AAFKAsfpappttpaeEYEPALQKYLGRERANLR-KRRTRLRHGDF 443
                 55555555555555553322..2222222222222122233333335555555555.4999999**98 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.06
                 --.SSCEEEEEEETT--EE..EEEE-TT..S-HHHHHHHHHHHHHHHHTT-..B--B-CTTBS-EEETTEEEEEEE----EE-SS......HHHHHHHH CS
         APH   6 sggasnrtylvttpagryv..lrrnppa..raaeeirrevallrlLakagv..pvPevlagdtddeeigllfalieyvpgrsllr......klsaaqlp 92 
                 + g + +++l + +++r v  l++ +++      eir ++ + + L +a+    v  ++a     +++   ++++eyvpg ++++       l+ ++++
  KKY14296.1 450 GQGGYGQVFLAQKKDTREVcaLKVMSKKllFKLDEIRHILTERDILTAAKSewLVKLLYA----FQDQSQIYLAMEYVPGGDFRTllnntgVLHNRHAR 544
                 555555666666666433323555555522222222222223344444444435644444....34444466899999998888866677666666666 PP

                 HHHHHHHHHHCCHH CS
         APH  93 ellealgeflaalh 106
                  +++++ ++   lh
  KKY14296.1 545 FYIAEMFACVDSLH 558
                 66666666666666 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 5.3e-05
                 HHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 152 vlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                  +a++ a +++    + +H+Dl+p N+l+d++ g+v  + Df++a
  KKY14296.1 546 YIAEMFACVDSLHNLGYIHRDLKPENFLIDAT-GHV-KLTDFGLA 588
                 6778888888888999**************55.444.37788776 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.96
                 C........................C CS
         APH 103 a........................a 104
                 +                        a
  KKY14296.1 705 RkpqyddpnyflskrtwdlitrlvaA 730
                 32222222222222222222222220 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.4e-05     0.089     123     166 ..     546     585 ..     522     594 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.4e-05
         Kdo 123 llkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                  + +  + +  lh++g  H+dl + n+l+++++    ++ l D+
  KKY14296.1 546 YIAEMFACVDSLHNLGYIHRDLKPENFLIDATG----HVKLTDF 585
                 55556677899*********************9....8888887 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.5e-05     0.089     225     254 ..     559     588 ..     442     603 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.5e-05
  Haspin_kinase 225 kfeFEHRdLhldniLvdknlnvtlidlkls 254
                    ++ + HRdL+ +n L+d++++v l d+ l+
     KKY14296.1 559 NLGYIHRDLKPENFLIDATGHVKLTDFGLA 588
                    67889*********************9886 PP

>> AbiJ_NTD5  AbiJ N-terminal domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.3   5.3e+03      54      76 ..      76      98 ..      75     104 .. 0.80
   2 ?   10.2   0.1   0.00032      0.52      37      85 ..     696     746 ..     688     751 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.3
   AbiJ_NTD5 54 DYegnvldvlekllsedpenLke 76
                DY++  l+vl+ l    + +L++
  KKY14296.1 76 DYNSGFLNVLRVLTTVGDISLQA 98
                99999999999998877777765 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00032
   AbiJ_NTD5  37 lienhprLLrslsfgDdDY..egnvldvlekllsedpenLkeleeyleeks 85 
                  +++++r+Lr  +++D+ Y  ++   d++++l+ ++++ +  ++e+ ++++
  KKY14296.1 696 NLKRWQRVLRKPQYDDPNYflSKRTWDLITRLVAAKEQRFRNIQEIHKHEY 746
                 5689***************777899*************9999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (847 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.50
# Mc/sec: 5143.60
//
Query:       KKY14297.1  [L=472]
Description: putative multiple inositol polyphosphate phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-42  144.9   0.0    4.8e-42  144.7   0.0    1.1  1  His_Phos_2  Histidine phosphatase superfamily (branch 2)


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.7   0.0   2.7e-46   4.8e-42       2     382 ..      68     413 ..      67     414 .. 0.89

  Alignments for each domain:
  == domain 1  score: 144.7 bits;  conditional E-value: 2.7e-46
                 EEEEEEEEE--SBB-SHHHHHHHHHHHHHHHH.........HHCHHTGCCGGGGT..........--SSSTTS.B-HHHHHHHHHHHHHHHHHCHTCCH CS
  His_Phos_2   2 LksvvvviRHGdRtPkqkvkksvtspiflsllkkhkeKlkqlktalekkghfpgtyrkv.eveklqlilkwggelthaGrkqaeelGrqfrqrYplgLl 99 
                 +++v++++RH++R+P+ +        + lsll+    +l+  ++al   ++f+ +++++ +v+   ++  +      aG  +a++ G ++r+rYp +L+
  KKY14297.1  68 VEQVHMISRHAERYPTINAGT-----RHLSLLQ----RLAESRNALSPVFDFLANWTYFtSVDRPAFEQLTST-SQNAGTLEAFNTGVKLRTRYP-HLI 155
                 89*****************84.....3333332....45679*****************85666666666666.788******************.*** PP

                 TTSS--TTEEEEEESSHHHHHHHHHHHHHHCHCCC---S-TTSTTGGG-TTTTCCCEEEHHHHCCCCHHCTTSHHTCHHHC.HHHTGGHCHHHHCHCCC CS
  His_Phos_2 100 rlhltykdlkirassegRviaSAaafakGllglegeltdllskdkdllddsnaakdlldeakkklkelltegaeacpafew.pikvakrvdelvkylke 197
                 +++    +  i+++s+ R +a+A +fa G++g e              +   a+  +++e ++++++ lt+g+ +c ++ + +++   ++   ++ +++
  KKY14297.1 156 PAN---GSTRIWSASSPRDVATARYFADGFFGREW------------EKNAVAELEVVPETMDRGADTLTPGD-TCLNYVEdTVEGHDKGYGVLAHWQK 238
                 997...89***********************8888............67888899999999999********9.999998889**************** PP

                 CCHHHHHHHCHHHCTTEEEE-HHHHHHHHHHHHHHHH.HHCT-TTGGGCTH..HCHHHHHHHHHHHHHHHC........TTTCCCCHHHHHHHHHHHHH CS
  His_Phos_2 198 dmdeniakrleqlcpgesnllakerwdklercfyekn.kfdiskicdlydemkydalhnrylkdleelyklakvipqEygigpeeklkiGllllnpllk 295
                 ++ ++i + l+ + +++ +++  ++++++e+c +e   + +is++c l+d+  + +l ++y  dl ++y+         g+g+   +++G l+ln+ l 
  KKY14297.1 239 VYIRRIIEHLQTA-NSNMTFTPVDVYSMMEMCGFEMLaRDGISPWCGLFDQ--EAWLDFEYARDLLHFYRA--------GPGNRFSKVMGMLWLNATLS 326
                 *******999999.7778*****************998999**********..******************........******************** PP

                 HHCTSSSEECCSCCCECS-SEEEEEE-HHHHHHHHHHCTTTTTBTTB.SSS............TTT..HCCCS-CT-EEEEEEEEETCTTT..EEEEEE CS
  His_Phos_2 296 kilndlqrtreeatperhvrlrlyfthdshiysllnaLglpeelagedslaa...........ldrlsaspelpymsqivfelyedssekk..fyvrll 381
                  +++   +            l+++f hd +i+++l+aLg p   + e    +            + +++s+++p++++i++e+ +++s  +   yvrl 
  KKY14297.1 327 LLEQGSSAGT----------LFFSFVHDGDIIPILSALGYPAGYDNEP---CetkmpsdtlvlDRAYRTSDITPMGGRIILERLQCESAGSqeIYVRLN 412
                 ***9999888..........******************8888666663...333478888898899********************6655335999986 PP

                 E CS
  His_Phos_2 382 l 382
                 +
  KKY14297.1 413 I 413
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 2941.79
//
Query:       KKY14298.1  [L=210]
Description: putative gnat family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-06   26.2   0.0    1.5e-05   25.2   0.0    1.5  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.5e-05   25.0   0.0    0.00014   21.8   0.0    2.0  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
    3.4e-05   24.2   0.0    4.5e-05   23.8   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   2.6e-09   1.5e-05      20     117 .]      48     176 ..      31     176 .. 0.66

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 2.6e-09
                     HHHHHHHHHHSTTCEEEE..EEET....TEEEEEEEEEEEET...........TSTTEEEEE...........................EEEESG CS
  Acetyltransf_1  20 seeefeesfsleaegllv..aeed....geliGfisllkipd...........ekggvayie...........................slaVsp 70 
                     + +  +++  +++ +l++  +  d    +e+++f+ ++ +++                                                l  +p
      KKY14298.1  48 TDRNIKQW-KEDPATLYFkvI--DtassNEIVAFAEYKLYDEsnlqllsyptaA------DVprifgdsanheaagdffgglwagqvlqKLNTAP 133
                     33333333.334446666432..2345689999999999988666664444331......224455667777777777777777777778888** PP

                     GGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  71 eyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     +++++G+Gs+L+++  ++a ++g+ +  l   e      +lY+k+G+
      KKY14298.1 134 KHQKRGAGSMLVQKGCDIADRRGLLA-GL---EASPMGAPLYKKHGY 176
                     **********************9933.55...335556999988997 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.081   4.8e+02       7      48 ..      38      81 ..      32      93 .. 0.65
   2 !   21.8   0.0   2.3e-08   0.00014      53     109 ..     125     179 ..     112     185 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.081
  Acetyltransf_10  7 eegietfkefispealrerieegealllvaeeg...gkivGviel 48
                     +eg   fk++ ++ +++++ e++++l++ + +    ++iv ++e+
       KKY14298.1 38 QEGSSSFKDQ-TDRNIKQWKEDPATLYFKVIDTassNEIVAFAEY 81
                     6777888766.5588888888777777766443333888888855 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 2.3e-08
  Acetyltransf_10  53 hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkav 109
                       ++ l  +p+++++G g++L+++ ++ a+++g+     ++asp   p+Y+k+G+++ 
       KKY14298.1 125 VLQKLNTAPKHQKRGAGSMLVQKGCDIADRRGL--LAGLEASPMGAPLYKKHGYVEK 179
                      67778899********************87765..59*****************986 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   7.6e-09   4.5e-05      27      76 .]     126     178 ..      72     178 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 7.6e-09
                     TEEEEE-GGGTTSSHHHHHHHH...TT..SEEEEEEEEE.THHHHHHHHHHTTEEE CS
  Acetyltransf_7  27 itrlaVdpeyrgkGiGraLlea...ae..kgiileqlel.naekaikfYeklGFee 76 
                     + +l ++p+++++G G+ L++    ++  +g+      l +++  +++Y+k+G++e
      KKY14298.1 126 LQKLNTAPKHQKRGAGSMLVQKgcdIAdrRGLL-A--GLeASPMGAPLYKKHGYVE 178
                     445889***************733311344422.1..2212235578*******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.53
# Mc/sec: 1198.80
//
Query:       KKY14299.1  [L=780]
Description: putative transient receptor potential ion channel [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.4e-114  381.5  20.4   5.3e-114  381.3  20.4    1.1  1  TRP       Transient receptor potential (TRP) ion channel
    3.6e-28   98.7   0.1    5.4e-28   98.1   0.1    1.3  1  TRP_N     ML-like domain


Domain annotation for each model (and alignments):
>> TRP  Transient receptor potential (TRP) ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  381.3  20.4  5.9e-118  5.3e-114       1     425 [.     117     646 ..     117     647 .. 0.91

  Alignments for each domain:
  == domain 1  score: 381.3 bits;  conditional E-value: 5.9e-118
         TRP   1 vkwvtaviaglallasnasavastlgnsnaaahvaas..vlslflyfQsvafigmlsvnyPpvlaawtqnfaWsmglirvsfmqkiinwyvqstgGtat 97 
                 v+ v++++a++a ++s+ + ++ + ++s+ ++h+a+   ++ +f+++Q+++f+gmls+n+P+vl a+++n+aWs g+i+++ mq+ in + +s++G+ +
  KKY14299.1 117 VAPVLGGFAAIAAIFSFLTTMH-GDSVSESRKHYAHGvsIFMVFAIYQHIFFTGMLSMNWPSVLVAFWSNYAWSSGMIYSTRMQNAINGFLGSNQGNIS 214
                 6789***********9999997.99***********99899*******************************************************998 PP

         TRP  98 lvlsssstssvsv...........kral.....................................kr.ges.k.slpesssklvrGikrvaekagiest 145
                 +v   ++ ++ ++           kr +                                     ++ g++ + +lp   +    G+++++++++i+++
  KKY14299.1 215 MVGAAETGVDSNNlgggysiaqiyKRTMsnlpfsssrsgvesltarametslmkrdgiankstgyTWyGNPvRpGLPLPGNYS--GFSGTLAQEDIPAS 311
                 87777665555557777777777733334445555555566666666689999999999999999888999988999954444..************** PP

         TRP 146 nafmtgllffliliallvvlvllfKlllellarkklikedrlkefrknwlgilkgallrlilifffqllvlclfeftqrdsaavvvlAvillalflgvl 244
                 +afmtgl++fl+lia +v+++ l+K++le+l ++++ik+ r+++fr++w  ++++a++r+++i+ff+++ l+lf+f  + sa+v+ +A++++alf++v+
  KKY14299.1 312 DAFMTGLIWFLVLIAGIVLAITLIKVTLEFLFKTQVIKTPRVAYFRQHWAKFIGAAIFRTLYIAFFMFMALTLFQFDFGGSAGVLGIAAVVFALFVVVM 410
                 ************************************************************************************************886 PP

         TRP 245 lff...................................................afrvlitarkskrlhknpaylLysdkkvlnkyGflyeqyrasryw 292
                   +                                                   +f ++  +    +++k+ +yl +++++++ ++G+l ++yr sr+w
  KKY14299.1 411 FGAigfamyyqwragrlvlghdkvcfayepvfgfvpcvtvllesslgekpgrrkTFGYIPWFGFRSAQRKDGEYLAHENERFTVRFGWLVSRYRDSRWW 509
                 66688889999999999999999999999999999999999999999999999977777776666677778889************************* PP

         TRP 293 ffvpllvylfvkalfialaqgsGkvQvialliiEllylvlliwlrPyedkrtnvlni.iisvvkvlnvilllaFseefglseivktvvGvvlivinavl 390
                 f  ++lvy +v+a+f+++a ++++vQv++ll++E+++++l++ ++P+e  r n++ i +++++k+l+v+l+ aF  +f++ +i+ tv+Gvv+ivi+++l
  KKY14299.1 510 FPSVWLVYDLVRACFYGGAANHPLVQVFGLLAVECIAFILIVKIKPFEATRLNLILIyFLGFSKILTVALSSAFEVRFDQDRIICTVIGVVIIVIQGIL 608
                 *************************************************************************************************** PP

         TRP 391 alvlliliivnaiiallsknpdr.ryrp..akddresf 425
                 ++vl+i+i+v+a+++++s ++++  ++p  ++ +r+++
  KKY14299.1 609 TIVLMIAILVGAVSSYMSLTRNHeGFHPrrWNGIRRKY 646
                 *********************99889999999999998 PP

>> TRP_N  ML-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.1     6e-32   5.4e-28      30     139 .]       2     111 ..       1     111 [. 0.98

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 6e-32
       TRP_N  30 tvvfnvtgtssienkavtlelkveaygyevvnetvdpCdanvkglCPlgpgfkinasgvlkvseevvseipsiaYsipdldatvrvriystgeateiaC 128
                 tv f++tg ++  n++v+++l ++ayg+ ++n t++pC+an+++lCP++++++i+a +v++vse+++s +p ia sipd+++++ +ri+s++++++iaC
  KKY14299.1   2 TVLFHLTGNTALVNESVMMYLGIYAYGEPRFNLTFNPCNANIDSLCPMNASTEIEALAVIPVSESDISLVPDIALSIPDFEGMAILRIFSNSTESQIAC 100
                 89************************************************************************************************* PP

       TRP_N 129 vsatitngktv 139
                 +sa +tng t+
  KKY14299.1 101 YSAVLTNGATF 111
                 ********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1064  (0.0593452); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.50
# Mc/sec: 4721.23
//
Query:       KKY14300.1  [L=209]
Description: hypothetical protein UCRPC4_g06808 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-36  125.7  19.8    1.9e-35  122.3  19.8    2.0  1  DUF1690          Protein of Unknown function (DUF1690)
  ------ inclusion threshold ------
        0.2   11.7   1.5       0.32   11.0   0.4    1.9  2  Frankia_peptide  Ribosomally synthesized peptide prototyped b
       0.41   11.1   2.5        3.5    8.1   0.4    2.3  2  Phage_TAC_12     Phage tail assembly chaperone protein, TAC
       0.41    9.5   3.7       0.53    9.1   3.7    1.1  1  Not1             CCR4-Not complex component, Not1
        1.8    8.7   5.5        1.2    9.2   2.0    1.9  2  CHDCT2           CHDCT2 (NUC038) domain


Domain annotation for each model (and alignments):
>> DUF1690  Protein of Unknown function (DUF1690)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3  19.8   5.4e-39   1.9e-35       1     139 []      31     197 ..      31     197 .. 0.97

  Alignments for each domain:
  == domain 1  score: 122.3 bits;  conditional E-value: 5.4e-39
     DUF1690   1 fkpetpiqfSqslvsqLessketdasraqalekliqerVaeeLkkLraeeeetlkkfeeklekellkde.............................. 69 
                 f ++tp+qfSq+lv++L+ s+etd++r+++ +++i +rV+eeL+k++a+e+++l+++ +k+++e+++++                              
  KKY14300.1  31 FASDTPVQFSQELVDSLQASSETDSTRNKSFDLHIAQRVKEELEKIQAREQSALESLYAKISSESSSSDtkssksskprlldiavssiqstnpfsdsse 129
                 7899************************************************************999999****************************9 PP

     DUF1690  70 adakdelsskalnekieeLrkkleefkkkeeeklpeeveeareevveClrenkgkpLdCweeveeFkkev 139
                 +++k++lss+++ + ie+L+k l++ +k+++ +lp+++e++r+e+v Clr+n+++pLdCw+eve+Fk++v
  KKY14300.1 130 EEQKKSLSSSKVLSAIEKLQKDLDA-RKHVK-ELPDDLEKTRSELVFCLRKNDRRPLDCWKEVESFKNAV 197
                 999**********************.77777.8**********************************998 PP

>> Frankia_peptide  Ribosomally synthesized peptide prototyped by Frankia Franean1_4349.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   8.8e-05      0.32      14      59 ..      38      93 ..      35      96 .. 0.89
   2 ?   -2.8   0.0       1.8   6.6e+03      48      60 ..     143     155 ..     141     156 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.8e-05
  Frankia_peptide 14 aFRqrLladpeeav.....keagYdlt.....peElqalekadadsleavalglde 59
                     +F q+L++++++       +++++dl       eEl+++++   ++le++ ++++ 
       KKY14300.1 38 QFSQELVDSLQASSetdstRNKSFDLHiaqrvKEELEKIQAREQSALESLYAKISS 93
                     699******9999899999*******7666668*****************999986 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.8
  Frankia_peptide  48 dsleavalglder 60 
                      ++ e+++ +ld+r
       KKY14300.1 143 SAIEKLQKDLDAR 155
                      5667788888876 PP

>> Phage_TAC_12  Phage tail assembly chaperone protein, TAC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.049   1.8e+02      72      96 ..      68      94 ..      39     101 .. 0.84
   2 ?    8.1   0.4   0.00096       3.5      63      99 ..     131     167 ..     123     171 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.049
  Phage_TAC_12 72 eieealekv..deekdleklfddvlke 96
                   ++e lek+  +e+  le+l++++  e
    KKY14300.1 68 RVKEELEKIqaREQSALESLYAKISSE 94
                  689999999877777799999999876 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00096
  Phage_TAC_12  63 hkkkrpsrdeieealekvdeekdleklfddvlkelkk 99 
                   ++kk  s +++ +a+ek++++ d+ k  +++ + l+k
    KKY14300.1 131 EQKKSLSSSKVLSAIEKLQKDLDARKHVKELPDDLEK 167
                   467778***********************99999987 PP

>> Not1  CCR4-Not complex component, Not1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.7   0.00015      0.53     151     267 ..      41     154 ..      28     159 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00015
        Not1 151 pglkvdrleeikeaPkils.dvteaLeeaglkkevdeylkeepsesllaeilekleleekeketgekikvnvklinalVlyvgieaieeakkksskavf 248
                 ++l vd+l+  +e  ++ + +++  + ++++k+e++++    +++s+l++++ k+++e+++++t+++ + + +l++  V  +  +   + ++++++++ 
  KKY14300.1  41 QEL-VDSLQASSETDSTRNkSFDLHI-AQRVKEELEKIQA--REQSALESLYAKISSESSSSDTKSSKSSKPRLLDIAVSSIQSTNPFSDSSEEEQKKS 135
                 444.5666666666655551344444.6788888888776..6679*********99888888889999***********9988777666666666777 PP

        Not1 249 stkssevallskLikeldp 267
                  ++s+ ++ ++kL k+ld+
  KKY14300.1 136 LSSSKVLSAIEKLQKDLDA 154
                 779999999****999986 PP

>> CHDCT2  CHDCT2 (NUC038) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.3     0.097   3.5e+02      71     138 ..      10      79 ..       4      97 .. 0.43
   2 ?    9.2   2.0   0.00035       1.2      80     155 ..      93     170 ..      75     173 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.097
      CHDCT2  71 ieeqlrraallnl.qeekekvgslaqrfaelellaeshqkll.kesaagnknanavlekvLnqleelLsd 138
                 +e+qlr  a +++ + ++++v + ++ ++  + l +s q  + ++s+ +++   ++ ++v ++le++ + 
  KKY14300.1  10 VEQQLRMGAGSSKpEGSSRHVFASDTPVQFSQELVDSLQASSeTDSTRNKSFDLHIAQRVKEELEKIQAR 79 
                 4555555554444333333333333333333333333332220333333333444555555555554443 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00035
      CHDCT2  80 llnlqeekekvgslaqrfaelellaeshqkllkesaagnknanavlekvLnqleelLsdm..kadvsrlpatlsrlrp 155
                   ++++++++ +s + r+ ++ + + + ++ +++s++++++ +   +kvL+ +e+l +d+  ++ v+ lp  l + r+
  KKY14300.1  93 SESSSSDTKSSKSSKPRLLDIAVSSIQSTNPFSDSSEEEQKKSLSSSKVLSAIEKLQKDLdaRKHVKELPDDLEKTRS 170
                 4444566666677788888888888888999999999999999**************99844679*****99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2196  (0.122483); expected 358.6 (0.02)
Passed bias filter:                      741  (0.0413297); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 1386.11
//
Query:       KKY14301.1  [L=522]
Description: putative mfs [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-37  126.7  56.2    7.2e-36  123.8  55.3    2.5  2  MFS_1     Major Facilitator Superfamily
    3.8e-09   35.9  12.0    3.8e-09   35.9  12.0    3.5  4  Sugar_tr  Sugar (and other) transporter
     0.0079   14.5  11.8       0.24    9.6   1.1    3.4  3  OATP      Organic Anion Transporter Polypeptide (OATP) family
  ------ inclusion threshold ------
      0.065   13.1   0.0      0.065   13.1   0.0    5.1  6  DUF5325   Family of unknown function (DUF5325)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.8  55.3   1.6e-39   7.2e-36       1     352 [.      47     407 ..      47     408 .. 0.83
   2 ?   -1.0   0.0      0.14   6.3e+02     235     268 ..     464     493 ..     440     502 .. 0.57

  Alignments for each domain:
  == domain 1  score: 123.8 bits;  conditional E-value: 1.6e-39
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 l++++fl+al+ +i+++++  +++ d+g s+s + +++++y l++a++ +++++ls+ +Gr+ vll+++++fa+++++++ a s+ +l+ +r+lqG+++
  KKY14301.1  47 LFISIFLVALDQTIISTSIA-TISADFG-SASGYTWVASAYLLAFAAGGPVWASLSNIWGRKVVLLAAVVWFAASSIICATAKSMAILIMGRALQGVAG 143
                 799*****************.*******.**********************************************66666347777************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllgg......llasslg.......................Wravfyilaivsllafvlfl 169
                 gal+ ++++ i+d+f+ ++rg+++gl  + + +++ +gp+lgg      + ++++g                       W ++ +i+            
  KKY14301.1 144 GALLLLVNICISDLFSMRKRGFYLGLTEVVWTAASGFGPILGGlwegikA-IDWFGsitilgltimvllgldfggetfpWGSARVIC------------ 229
                 *******************************************4444321.123333333334444444444445555555555555............ PP

       MFS_1 170 lllpeepperkrkspkeee...............kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllall 253
                                   +               ++ ++ pl p +++++++  +   l++ ++ ++ f ++ ++lply+q+v+g s  + +gll+  +
  KKY14301.1 230 ------------------LivfgllfalfflfseAKLARYPLMP-LSIMRHRSNIA-SLLVDFCHGVSFIAAEYYLPLYMQSVRGAS-PIHSGLLVLPI 307
                 ..................15555555555555555556667899.9*******997.77777777789999****************.79999999999 PP

       MFS_1 254 alvgailallagrlsdrlgr.rrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggal 351
                 +l +   ++++g +++ +gr r +++++ ++++l++ +++ l++ts+ ++++l+ ++iG+g+g+ f + l ++++l+++e ++ta++ f ++++l+++l
  KKY14301.1 308 GLTTSLTGIVCGIIMHQTGRyREIIWIGTVIFTLGFGLFIDLSATSKLSMVILFQIVIGIGSGMLFQAPLIALQSLVSQEDTATATATFEFIRNLATSL 406
                 9999999*************6777777777777777788888888888888889999***************************************998 PP

       MFS_1 352 g 352
                 +
  KKY14301.1 407 S 407
                 5 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.14
       MFS_1 235 qevlglsglllaglllallalvgailallagrls 268
                 +e + +s  + +     l+++v+a++ + +g++s
  KKY14301.1 464 KEAFAWS--MRNM--WILYCCVAACAIVASGFIS 493
                 3444444..4444..3333333333333444444 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9  12.0   8.5e-13   3.8e-09      44     154 ..      74     181 ..      46     197 .. 0.89
   2 ?    2.5   3.6     0.012        54     319     369 ..     200     247 ..     190     286 .. 0.81
   3 !    4.2   9.1    0.0036        16      44     118 ..     296     371 ..     276     380 .. 0.83
   4 ?   -3.1   0.1       0.6   2.7e+03     314     335 ..     469     490 ..     462     501 .. 0.66

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 8.5e-13
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                 s++ +++++s++l+  ++G+ +   l++++GRk +ll+a+v f ++++++a+ak   s+ +li+gR l G++ G+   lv + is +   ++Rg+  +l
  KKY14301.1  74 SASGYTWVASAYLLAFAAGGPVWASLSNIWGRKVVLLAAVVWFAASSIICATAK---SMAILIMGRALQGVAGGALLLLVNICISDLFSMRKRGFYLGL 169
                 677899************************************************...****************************************** PP

                 HHHHHHHHHHHH CS
    Sugar_tr 143 yqlaitfGilva 154
                 +++ +t+   ++
  KKY14301.1 170 TEVVWTAASGFG 181
                 *****9876655 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTH CS
    Sugar_tr 319 llllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgp 369
                 + +lG+++m ++ + +g+ ++++ ++     i++ivf +lf+ +f ++ + 
  KKY14301.1 200 ITILGLTIMVLLGLDFGGETFPWGSAR---VICLIVFGLLFALFFLFSEAK 247
                 468899999999999997777777776...9**************998665 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.0036
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTH.HHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGR.kkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGl 118
                 s + sgl+v    +   +++++ g++++  GR + ++ i++v+f  g  l +   +++++ ++i+ ++++Gig G+
  KKY14301.1 296 SPIHSGLLVLPIGLTTSLTGIVCGIIMHQTGRyREIIWIGTVIFTLGFGLFIDLSATSKLSMVILFQIVIGIGSGM 371
                 45677888888888889999***********9566777799999999888887777899***************97 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 0.6
                 S-SHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 314 fGRRtllllGaagmaicfvilg 335
                 +++R++ +l ++++a++ v  g
  KKY14301.1 469 WSMRNMWILYCCVAACAIVASG 490
                 5677777777777776666655 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   1.1   5.4e-05      0.24     129     190 ..     126     187 ..     109     202 .. 0.89
   2 !    3.6   0.3    0.0035        16     280     356 ..     248     323 ..     243     349 .. 0.84
   3 !    7.3   0.4   0.00028       1.2     133     207 ..     356     455 ..     340     520 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 5.4e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 129 sklvllfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGsl 190
                  k + +++++  l+G+++ ++  l    i D  + ++  +ylg++ ++++    +G +lG+l
  KKY14301.1 126 AKSMAILIMGRALQGVAGGALLLLVNICISDLFSMRKRGFYLGLTEVVWTAASGFGPILGGL 187
                 335679*************************************************9999987 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0035
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 280 lkdfpkalkrllknpifllvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvk 356
                 l+  p + +++++++  +  +l   ++ + +++   +lp y+++  + s+ ++ ll+ ++ +  + +Gi++g ++++
  KKY14301.1 248 LARYPLMPLSIMRHRSNIASLLVDFCHGVSFIAAEYYLPLYMQSVRGASPIHSGLLVLPIGLTTSLTGIVCG-IIMH 323
                 56667777888999999999999999******************************************9886.5554 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.00028
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxx................. RF
        OATP 133 llfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllklyvdids........eisltp................. 206
                  +++l q+++GiG+ +++   +  +   v+++++++  +++ ++r l   l  ++G+++ +  ++++s        + +lt+                 
  KKY14301.1 356 SMVILFQIVIGIGSGMLFQAPLIALQSLVSQEDTATATATFEFIRNLATSLSIVIGGVVFQNSMQLQShhlsssglSQNLTEalsgkeaaanvvlihqi 454
                 378899******************************************************999999777666665544444455555566666666666 PP

                 x RF
        OATP 207 k 207
                 +
  KKY14301.1 455 S 455
                 2 PP

>> DUF5325  Family of unknown function (DUF5325)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.5     0.014        64       7      38 ..      37      68 ..      33      72 .. 0.83
   2 ?   -3.6   1.6       2.5   1.1e+04      20      43 ..     117     132 ..     107     141 .. 0.46
   3 ?   -1.5   0.9      0.52   2.3e+03      12      45 ..     201     233 ..     192     239 .. 0.69
   4 ?   -0.0   1.1      0.19   8.4e+02       7      48 ..     301     344 ..     297     349 .. 0.64
   5 ?   -0.9   4.2      0.35   1.6e+03      13      48 ..     334     368 ..     322     372 .. 0.78
   6 ?   13.1   0.0   1.4e-05     0.065      32      57 ..     474     499 ..     466     502 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.014
     DUF5325  7 ifllyAilAvaslmgiGiaigersilgiiiai 38
                 f ++Ail+++++  + +a+ ++ i   i+ i
  KKY14301.1 37 NFRIFAILGALFISIFLVALDQTIISTSIATI 68
                6789***********99999888887777776 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.5
     DUF5325  20 mgiGiaigersilgiiiaivaliv 43 
                 ++ +i  +            ++i+
  KKY14301.1 117 AASSIICATAKS--------MAIL 132
                 333333332222........2233 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.52
     DUF5325  12 AilAvaslmgiGiaigersilgiiiaivalivvm 45 
                  il++  ++ +G+  g +   +  + ++ li v+
  KKY14301.1 201 TILGLTIMVLLGLDFGGETFPWGSARVICLI-VF 233
                 6788888888888888777777766666655.34 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.19
     DUF5325   7 ifllyAilAvaslmgi..GiaigersilgiiiaivalivvmGlG 48 
                  +l++ i  + sl+gi  Gi   ++     ii i  +i+++G+G
  KKY14301.1 301 GLLVLPIGLTTSLTGIvcGIIMHQTGRYREIIWIGTVIFTLGFG 344
                 56777777777787773344445555556677777777777776 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.35
     DUF5325  13 ilAvaslmgiGiaigersilgiiiaivalivvmGlG 48 
                 i  v++  g+G++i   s+   + +++++ +v+G+G
  KKY14301.1 334 IGTVIFTLGFGLFIDL-SATSKLSMVILFQIVIGIG 368
                 6678888899999965.5566677888888888887 PP

  == domain 6  score: 13.1 bits;  conditional E-value: 1.4e-05
     DUF5325  32 lgiiiaivalivvmGlGFktKkkmRe 57 
                 ++i+ + va+++++++GF  K+k+ +
  KKY14301.1 474 MWILYCCVAACAIVASGFISKQKLNK 499
                 6899*******************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       949  (0.052931); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.48
# Mc/sec: 3242.44
//
Query:       KKY14317.1  [L=187]
Description: putativebinding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
          8    7.1  12.4        3.2    8.4   0.9    3.8  3  Candida_ALS  Candida agglutinin-like (ALS)


Domain annotation for each model (and alignments):
>> Candida_ALS  Candida agglutinin-like (ALS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.9   0.00018       3.2       2      20 ..      33      52 ..      33      70 .. 0.86
   2 ?   -2.6   0.1      0.49   8.8e+03      10      20 ..      86      98 ..      83     100 .. 0.59
   3 ?    2.5   1.9     0.013   2.3e+02       8      25 ..     123     135 ..     110     137 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00018
  Candida_ALS  2 TvTstwtGstttTtTit.ag 20
                 TvTs  +Gs+++++T+  +g
   KKY14317.1 33 TVTSLRSGSAIQYSTLVaSG 52
                 9**************54354 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.49
  Candida_ALS 10 st.ttTtTit.ag 20
                 +t +  +T++ +g
   KKY14317.1 86 TTgALRYTVPhSG 98
                 4445557887665 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.013
  Candida_ALS   8 tGstttTtTitagPGgTg 25 
                  tGs ++T    ++PG+Tg
   KKY14317.1 123 TGS-IST----SSPGSTG 135
                  333.333....89**998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1447.71
//
Query:       KKY14318.1  [L=746]
Description: putative o-methyltransferase-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-21   76.2   0.0    4.2e-21   75.2   0.0    1.4  1  Methyltransf_2  O-methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.0   2.3e-25   4.2e-21      15     209 ..     524     725 ..     513     726 .. 0.77

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 2.3e-25
                     ..HHHHHS--HHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSS-GGG-........SEEEEET-TTSHHHHHHHHH-TT-E...EEEEE-HHHH CS
  Methyltransf_2  15 iifkkafGislfeaikrdeeerakfnkglqessslvakkvleafdlegl........kslvDvGGGtGalakaivsayPtik...vivfDlpeVv 98 
                       + +  G+++f++  +++  +  fn++++++s+ + +   e +  e++          +vDvGGG G  +k+  s +P i+   +++ Dlpe+ 
      KKY14318.1 524 FQYWRGAGANMFQYVGTNPLLTSDFNDAMESHSKYNLTPWPEVYPTETVvasakpdrALVVDVGGGKGHDLKKFLSRHPDISagsLVLQDLPEIL 618
                     2355566667**********************98766544444432222111111116799*******************972225778999999 PP

                     HHHHHHS-----TTEEEEES-TTT.S-----SEEEEESSGGGS-HHHHHHHHHHHHHH--TT.-EEEEEE----TTS---HHHHHHHHHHHHCSS CS
  Methyltransf_2  99 eaAkehlsageeervefvgGdffk.dslPeaDaillkrvlhDwsdekcvklLkrvkkalpag.Gkvivveavlgadpsgeletelvdlimlvqte 191
                      +  e      e+ ++++  dff  +++  a +++l +vlhDw d + +++Lk++  a+ +g  k++v e++++ + +   ++++ d+ m+    
      KKY14318.1 619 INGIET-----EPAITVQPHDFFTpQPVKGASIYFLHNVLHDWPDVAATEILKNLAGAMEKGySKLLVHESLVS-NIKPLARVTVSDITMMTCLA 707
                     988887.....9***********4355669******************************98345666666655.444555556669******** PP

                     -----HHHHHHHHHHCT- CS
  Methyltransf_2 192 GkeRteaeyeellseaGf 209
                       eR+e+e+++l+++aG 
      KKY14318.1 708 AAERSESEWTQLITSAGL 725
                     ****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 4501.81
//
Query:       KKY14319.1  [L=512]
Description: putative mfs quinate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.9e-101  338.0  21.7    2.2e-90  303.7   9.7    2.0  2  Sugar_tr  Sugar (and other) transporter
    8.9e-18   64.3  27.6    8.9e-18   64.3  27.6    2.9  2  MFS_1     Major Facilitator Superfamily
    0.00069   18.2   1.7     0.0012   17.4   1.7    1.3  1  TRI12     Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
        8.1    5.1   5.8       0.56    8.9   0.2    1.8  2  DUF2207   Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.7   9.7   4.9e-94   2.2e-90       2     365 ..      30     410 ..      29     412 .. 0.94
   2 !   41.2   4.6   2.1e-14   9.4e-11     392     452 .]     410     472 ..     409     472 .. 0.96

  Alignments for each domain:
  == domain 1  score: 303.7 bits;  conditional E-value: 4.9e-94
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTS CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkn 100
                 a  a++gg+lfg  tg+ig++ltl  f +++gl + +++ +  + ls  ivs +++G+++G+l a++++d+fGRk++lliaav++ iga++q  a    
  KKY14319.1  30 ACSACFGGMLFGIETGIIGGVLTLEPFKRKYGLLNLSDKAK--ANLSANIVSTLQAGCFVGALAASPISDKFGRKPALLIAAVVATIGAIMQTSAS--G 124
                 56799***************************999887555..58***************************************************..6 PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl.nktsnadgwrillglqlvpallllilllflPESPryl 198
                 ++ +++vgR++ G+gvG+as+++P+yisE+Ap ++Rgal++lyql+i++G ++a+++++g   + s++  + ++l +q++pa+lll+++lf  ESPr+l
  KKY14319.1 125 HLAAMYVGRFINGMGVGTASAITPLYISENAPRAIRGALTGLYQLFIVTGVMLAFWINYGAaLHLSGTALYVVPLSMQILPAILLLFFMLFNNESPRFL 223
                 8************************************************************7778889******************************* PP

                 HHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH..............HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-TH CS
    Sugar_tr 199 vekgkeeeakevlaklrgeedadrelaeekdsleaeqeee.........kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsk 288
                  ++++ e+ak+vla++r+ ++++++++ e++ +    e+e         +a  ke++  k++r+r+li + l+i+qq+tG na+ yy+p+if nlg++ 
  KKY14319.1 224 AKQDRWEDAKRVLARVRNLPQDHPYIESEFQDIVTVIENEraliggasfMALQKEMWLIKGNRRRTLISITLMICQQMTGTNALNYYAPEIFANLGVTG 322
                 *******************9999999999998888888888899*9999999999****99************************************** PP

                 H...HHHHHHHHHHHHHHHHHH.HHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS..........CHHHHHHHHHHHHHHHT CS
    Sugar_tr 289 s...llvtiivgvvnfvatfva.iflvdrfGRRtllllGaagmaicfvilgivalllvaks.......kaasivaivfialfialfal 365
                 +   l +t+i+gvv+++a+    i+  d +GRR+ ll++++ + +c+ +++i + + +  s        aa++v++v+i+lf+a++++
  KKY14319.1 323 TrsgLFATGIYGVVKMTACSLFlILAADSLGRRRSLLWSSIAQGLCMYYIAIYVRIHPPDSsdtnasrPAAGYVSLVAIYLFAACYQF 410
                 *9**************9977665899*************************555555444448999999*****************97 PP

  == domain 2  score: 41.2 bits;  conditional E-value: 2.1e-14
                 HHHHHHHHHHHHHHHHHHHCHHH..T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 392 vavnwlanflisllfpiiteaig..ggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 +a++wl+nf+++   ++++ ++g  g++++++f++++  ++if++ff+petkg +le+++ lf
  KKY14319.1 410 FATQWLFNFVVARSVTTMLATMGkgGYGTYFLFGSFCFSMFIFTWFFIPETKGMSLEKMDDLF 472
                 689*******************99999********************************9887 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3  27.6     2e-21   8.9e-18       2     318 ..      34     412 ..      29     432 .. 0.74
   2 ?    1.9   2.0     0.019        84     150     179 ..     435     462 ..     419     494 .. 0.73

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 2e-21
       MFS_1   2 llaaflsalarsilgpalpl.alaedlg....ispseigl...lltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw.lllv 90 
                 +++++l ++  +i+g +l+l   ++ +g    ++++ ++l   ++++  +g++v++l ++++sd+fGr++ ll+++++  +g +++   as++  +++v
  KKY14319.1  34 CFGGMLFGIETGIIGGVLTLePFKRKYGllnlSDKAKANLsanIVSTLQAGCFVGALAASPISDKFGRKPALLIAAVVATIG-AIMQtSASGHLaAMYV 131
                 6889999999999*****9999999999888744444555556888888899******************999999999999.555532488888**** PP

       MFS_1  91 lrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll...peepperkrkspke 186
                 +r++ G+g g++ ++   +i++ +p+  rg  +gl+++++  G++l+  +    a +l+ +a++++   + +l ++l l+++    e+p+  +++  +e
  KKY14319.1 132 GRFINGMGVGTASAITPLYISENAPRAIRGALTGLYQLFIVTGVMLAFWINYGAALHLSGTALYVVPLSMQILPAILLLFFMlfnNESPRFLAKQDRWE 230
                 *******************************************************99998888888777776666644444411244444444444444 PP

       MFS_1 187 ee................................kgtgpaplvp......awkallkdpvlw.illialllfffgfsglltllplylqevlgls....g 242
                 +                                 +  g+a++        ++k  +++   + ++ ++++  ++g+++l ++ p +    lg +    g
  KKY14319.1 231 DAkrvlarvrnlpqdhpyiesefqdivtvienerALIGGASFMAlqkemwLIKGNRRRT--LiSITLMICQQMTGTNALNYYAPEI-FANLGVTgtrsG 326
                 44999999999999988888888888886555554444444444677755555555555..34688888888999999*******7.999999977777 PP

       MFS_1 243 lllaglllallalvgailallagrls.drlgrrrrlllallllllaalglallavt.............ssavllll...vlvliGfglgfvf 318
                  l a+++++++ + ++ l   +  l+ d lgrrr ll++ ++  l+   +a+   +                 ++++   +++l+  ++ f++
  KKY14319.1 327 -LFATGIYGVVKMTACSL---FLILAaDSLGRRRSLLWSSIAQGLCMYYIAIYVRIhppdssdtnasrpA---AGYVslvAIYLFAACYQFAT 412
                 .44444777777777655...444444***************9999998888888777888888874442...33332224444555444443 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.019
       MFS_1 150 Wravfyilaivsllafvlfllllpeepper 179
                   +++++++ +++ +f++   +++ ++++ 
  KKY14319.1 435 GYGTYFLFGSFCFSMFIF--TWFFIPETKG 462
                 568899999999999997..5555555444 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.7   2.7e-07    0.0012      81     212 ..      76     211 ..      62     240 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.7e-07
       TRI12  81 slfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctat.kfntllaamtllgvaagpaga.splfvgelmsn..ktkflgllivsipv 175
                 +++stl   g  v  l    ++d+fgr+p ++++ ++  +gai+  +a+ ++ ++     + g+  g a a +pl++ e      +  + gl  + i +
  KKY14319.1  76 NIVSTL-QAGCFVGALAASPISDKFGRKPALLIAAVVATIGAIMQTSASgHLAAMYVGRFINGMGVGTASAiTPLYISENAPRaiRGALTGLYQLFIVT 173
                 455665.46888999999**************************99886256667777788999999998758*****987541155678888888888 PP

       TRI12 176 vvtsglspylgqrlaiqgswrwifyiyi.itsaiavll 212
                  v+ +    +g  l + g+  +++ + + i+ ai +l+
  KKY14319.1 174 GVMLAFWINYGAALHLSGTALYVVPLSMqILPAILLLF 211
                 88877778888888888887777655431444444433 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.2   0.00013      0.56     373     452 ..     153     233 ..     133     246 .. 0.74
   2 ?   -3.1   1.3      0.56   2.5e+03     408     409 ..     413     431 ..     323     461 .. 0.52

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00013
     DUF2207 373 dkkgkkklkklsalglgliilglilillallllvll...lvfllilllillliaiivlllfsrllgrrteeGaellakwkgFk 452
                 ++++++++  l  l+ ++i+ g++l+++++++++l+     +++++l + +l  +i+ll+f +l+   ++   +  ++w+  k
  KKY14319.1 153 ENAPRAIRGALTGLYQLFIVTGVMLAFWINYGAALHlsgTALYVVPLSMQILP-AILLLFF-MLFNNESPRFLAKQDRWEDAK 233
                 6788999************************9999966433333333333333.3333333.578888888888888887655 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.56
     DUF2207 408 l.................l 409
                                   +
  KKY14319.1 413 QwlfnfvvarsvttmlatM 431
                 0222333334444444441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 3541.04
//
Query:       KKY14320.1  [L=645]
Description: hypothetical protein UCRPC4_g06775 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.5e-134  447.8   1.3   3.2e-134  447.5   1.3    1.1  1  DUF2264   Uncharacterized protein conserved in bacteria (DUF2
  ------ inclusion threshold ------
      0.019   14.9   0.0      0.095   12.8   0.0    2.3  1  BNR       BNR/Asp-box repeat
       0.29   11.9   1.3       0.83   10.5   1.3    1.9  1  TPR_4     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> DUF2264  Uncharacterized protein conserved in bacteria (DUF2264)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  447.5   1.3  5.4e-138  3.2e-134       1     352 [.      21     369 ..      21     370 .. 0.98

  Alignments for each domain:
  == domain 1  score: 447.5 bits;  conditional E-value: 5.4e-138
     DUF2264   1 tRadwvealeklldpllpylspgkarvklpgeegahfdekaaqlEgfaRplwglapllaggdeeteegklrerylkglaagtdpespeywgeiedldgQ 99 
                 tRad+++a+ +ll+pll+ +++ ++rvk+ g++++++de+  qlEg+ Rplwgla+llagg++     + +er+++gl agtdpe+ e+wg+iedld Q
  KKY14320.1  21 TRADFQAACVALLEPLLSRMTHYGSRVKI-GASATRYDETGRQLEGYTRPLWGLASLLAGGGR--F--AGAERWREGLIAGTDPEHVEFWGQIEDLD-Q 113
                 7****************************.8*****************************999..6..67*************************99.* PP

     DUF2264 100 rlVeaaalalaLllapeqlwekldeeekenlvewLkqlrekempdnNWllFrvlvelaLkkvgeeydeerleedlekleefylgdGwysDGp..erqlD 196
                 r+Ve a l++aL++ap+++w++l++++k+n+ +w ++++ + mp++NWl+Frv+++l+Lk++g++y+ +++e+d+++l++fy+ +Gw+sDGp  + q+D
  KKY14320.1 114 RMVELAPLGFALAVAPDTFWKPLTDKQKQNVQKWVSSINAQGMPNTNWLWFRVFANLGLKNNGAKYSLDQIEQDMDHLDTFYVAEGWSSDGPrkHCQMD 212
                 ********************************************************************************************55579** PP

     DUF2264 197 YYs.sfaiqlyqllylkllaaeedperaekfrerarrfaedferlfdadGaaipfGRSltYRfAaaaplwaaalla..elpaplspgqvrglllrvlrw 292
                 YYs sfaiq++qll++kl a + d +ra+++r+ra ++a+ f+++fd+dG+ ipfGRSltYR+A+a+ +w a+++a  e papl++g+v+g+llr++rw
  KKY14320.1 213 YYSgSFAIQFLQLLFSKL-AGDIDWKRANEYRDRAIHYAKAFVHYFDEDGRSIPFGRSLTYRWAQAS-FWGALAFAdvEPPAPLTWGVVKGILLRHMRW 309
                 ******************.99**********************************************.********88899999*************** PP

     DUF2264 293 wleskgafdedGlltlGfagpnmelaenYnspgSpYwalkaflaLalpadhpfWtaeeep 352
                 w++++++f+ dG+l++G+++pnm l+e+YnspgSpYw++ +f++Lalp++hpfW+ +e p
  KKY14320.1 310 WTQHEDMFNIDGTLNIGYTYPNMFLSEDYNSPGSPYWCCLSFVPLALPENHPFWQVDELP 369
                 *******************************************************99987 PP

>> BNR  BNR/Asp-box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.6e-05     0.095       2      12 .]     446     456 ..     445     456 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.6e-05
                 EESSTTSS-EE CS
         BNR   2 yStDgGktWsk 12 
                 +S+D+G+tW++
  KKY14320.1 446 ISDDNGETWKL 456
                 8********85 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.3   0.00014      0.83       2      24 ..      68      90 ..      67      91 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00014
       TPR_4  2 rallaLArallalGdldeArall 24
                r l++LA +l+  G+++ A+++ 
  KKY14320.1 68 RPLWGLASLLAGGGRFAGAERWR 90
                679******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 4213.63
//
Query:       KKY14321.1  [L=416]
Description: putative prephenate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-14   53.6   0.0    2.5e-14   52.9   0.0    1.3  1  PDH            Prephenate dehydrogenase
  ------ inclusion threshold ------
       0.39   11.3   3.7        9.2    6.9   1.4    2.7  2  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   2.8e-18   2.5e-14      45     255 ..      52     255 ..      27     258 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 2.8e-18
                 CGSEEEE-S-GGGHHHHHHHHHHHS-TT-EEEE--S--CHHHHHHHHHCC..GCEEEEEES---S-SSGGG--TTTTTT-EEEEEE-TTS-HHHHHHHH CS
         PDH  45 eadivvlavPvevilevlkelaphlkedalitDvgsvKekvvreleellkegksfvgghPmaGteksGvdaareelfenavviLtPtektdkealekvk 143
                   d +v +v  e i +++++  p  k +a++  ++s K+    + e++l++ +++v+ h + G+         +    +++ ++    +td ea+  v 
  KKY14321.1  52 MSDWIVYSVEAELIDKIVAQYGPSTKLGAIVGGQTSCKAPELAAFERHLPSDVQIVSCHSLHGP---------NVDPRGQPLVIIKHRATD-EAVRLVE 140
                 4599999*********************************************************.........333479999999999999.******* PP

                 HHHHHCT-EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHHHCHHCCCCHHHHCGTCCHHHHH....CGGGS-HHHHHHHHHHTHHHHHHHHHHHHHHHH CS
         PDH 144 elleevgarvilmspeeHDrvvavvshlphvvaialaatlkekkndekeirklasggfrdvt....RiaksnPelwadilleNkeavlealdkfikelk 238
                 ++l  ++ +v+ +s e HDr++a ++ ++h+++ ++  +  ++k+   e+ ++ +g+ +  +    Ri ++   ++a +++ N    ++++ +++++++
  KKY14321.1 141 NILSCLKSKVVHLSGEMHDRITADTQAVTHAAFLSMGSAWMANKQFPWELNRYVGGIENVKInitlRIYSNKWHVYAGLAILNPA-AKKQIRQYAASVT 238
                 ********************************************************9776666778*****************99.9************ PP

                 HHHHHHHTT-HHHHHHH CS
         PDH 239 klkelienedaeeLvel 255
                 +l +l+  + + eL e 
  KKY14321.1 239 ELYKLMLGGHRAELEER 255
                 **999888877777765 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   1.4     0.001       9.2       2      15 ..       6      19 ..       5      82 .. 0.55
   2 ?   -3.1   0.0       1.3   1.2e+04      55      73 ..     132     150 ..     124     172 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.001
                   EEEETTSHHHHHHH CS
  F420_oxidored  2 igiiGaGnmgeala 15
                   igiiG+G+mg+ ++
     KKY14321.1  6 IGIIGMGDMGRIVN 19
                   78888888887654 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.3
                    HHHHHHH-SEEEE-S-HHH CS
  F420_oxidored  55 neeaaeeadvvvlavkped 73 
                    + ea++  + ++ ++k ++
     KKY14321.1 132 TDEAVRLVENILSCLKSKV 150
                    4455555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 2710.19
//
Query:       KKY14322.1  [L=152]
Description: putative 40s ribosomal protein s14 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-46  156.9   1.1    2.5e-46  156.6   1.1    1.1  1  Ribosomal_S11  Ribosomal protein S11
  ------ inclusion threshold ------
      0.083   13.2   0.0       0.15   12.3   0.0    1.4  1  CBM_25         Carbohydrate binding domain (family 25)
       0.11   11.5   0.0       0.13   11.3   0.0    1.1  1  DUF2252        Uncharacterized protein conserved in bacteria 


Domain annotation for each model (and alignments):
>> Ribosomal_S11  Ribosomal protein S11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.6   1.1   4.1e-50   2.5e-46       1     110 []      30     148 ..      30     148 .. 0.99

  Alignments for each domain:
  == domain 1  score: 156.6 bits;  conditional E-value: 4.1e-50
  Ribosomal_S11   1 GvahiqasfnntiititdlkGaevlvksaGglgvkasr.kssPyaaqlaaekaaekvldkGikavevkvkg........pGpGreaalralaraGl 87 
                    Gva+i+asfn+t++++tdl+G+e++ + +Gg++vka+r +ssPyaa+laa+++a ++++ Gi+a+++k+++        pGpG+++alralar+G+
     KKY14322.1  30 GVARIFASFNDTFVHVTDLSGRETICRVTGGMKVKADRdESSPYAAMLAAQDVAARCKELGINALHIKIRAtggngtktPGPGAQSALRALARSGM 125
                    89********************************************************************************************** PP

  Ribosomal_S11  88 kigriedvtPiPhdgirrpkkrr 110
                    kigriedvtP+P d++rr+++rr
     KKY14322.1 126 KIGRIEDVTPTPSDSTRRKGGRR 148
                    ********************998 PP

>> CBM_25  Carbohydrate binding domain (family 25)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.6e-05      0.15      12      59 ..      86     133 ..      79     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.6e-05
      CBM_25  12 trkkGftsayihyrpaGGswtavpGvkmrdaeaGyakkdvdlGaassl 59 
                 ++++G ++ +i+ r +GG  t +pG + ++a    a+  + +G   ++
  KKY14322.1  86 CKELGINALHIKIRATGGNGTKTPGPGAQSALRALARSGMKIGRIEDV 133
                 5789***************************99999999999976665 PP

>> DUF2252  Uncharacterized protein conserved in bacteria (DUF2252)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.2e-05      0.13     279     341 ..      21      83 ..       4      89 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.2e-05
     DUF2252 279 veheGeRvvegqrllqaasdifLgwteldgrsfyvRqlrdmkgsldlekldkdelaeyarllg 341
                 +  eGe v  ++r++ +  d+f + t+l+gr+ + R +  mk+++d ++ ++  ++ +a+ ++
  KKY14322.1  21 QVREGENVFGVARIFASFNDTFVHVTDLSGRETICRVTGGMKVKADRDESSPYAAMLAAQDVA 83 
                 3589******************************************99998877777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.30s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1029.12
//
Query:       KKY14323.1  [L=470]
Description: putative aar2 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-65  222.2   0.0    1.6e-65  221.9   0.0    1.0  1  AAR2      AAR2 protein


Domain annotation for each model (and alignments):
>> AAR2  AAR2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.9   0.0   8.7e-70   1.6e-65       3     350 ..       2     426 ..       1     426 [. 0.82

  Alignments for each domain:
  == domain 1  score: 221.9 bits;  conditional E-value: 8.7e-70
        AAR2   3 atlllldlpegtefGiDlksftvgpkFkGikmiPpGvHfvyysaasstselslrsgfffy......fkkgevivkkwdkeeEdLve..elseeeaeryk 93 
                 +t+l++++p++t++++Dl+s t +p F+Gi+ +PpG+Hfv +++    + ls+r+g +f+       ++++ i+ +w  eeE Lv+  +   e +  + 
  KKY14323.1   2 TTVLFQSVPPQTLLTLDLISLTASPAFQGIRRVPPGLHFVLTGT---DAGLSVRNGVWFQvpgadaGTSQRNIIFQWIPEEEHLVQihD---ETSPAVL 94 
                 79******************************************...99****************8777789**************442...3333333 PP

        AAR2  94 anl...ksiefdkkLapYpsdasek........WksltshIteelleri.lpesgkisstaelasseseaesekkkawskssseeskgssakrdeeelp 180
                  +     + ++ ++L+ Y +++++k        W+slt+hI+ ++l+ri lp +++ ss              + ++w+ +s+     ss ++ e e+p
  KKY14323.1  95 RGEgfgLRDQLGGGLVDYGFQNTNKdfddnlpsWQSLTQHINMDTLNRIlLPPQSSSSS------------PTDIPSWTITST----SSSIQDLEPEIP 177
                 3221135678999********998899999999****************4442222221............123455655552....222223333444 PP

        AAR2 181 slkskegtelr............FteiplkrtwpegatgrelTkaalDkSwaLedllrksssgd................eaelLgElqfaFvlflllq 251
                 +l+s+ + + +             ++i+l+rtwp  a+gr +T +a+D+SwaL +l+    +++                  +lL Elqf+F+++lll 
  KKY14323.1 178 NLSSSRNPSPStdfttddpstlnLIPIDLRRTWPSTAIGRSRTLYARDRSWALSNLFTLAAEQSpsstsnmtqtqrlelgAHQLLSELQFCFLMVLLLG 276
                 44444444433444455555555********************************999988877999******************************** PP

        AAR2 252 nyssfeqWkrllsLlltceeaikerpdlfvkflrvLraqLkelpe............flsdivs.........................kdnfLkkllk 313
                 n+s+feqWkr+  L++tc++a++e +  f+ +l+vL+ q+++l +            +                               ++  ++kll+
  KKY14323.1 277 NFSCFEQWKRITGLIFTCKQAVREIEGWFILVLKVLEEQIRCLGTgeggmfeagglgM-----MeevreefasgiadgmlgggagllggGEGRMRKLLM 370
                 *******************************************887776433333331.....03566677788889***********9999******* PP

        AAR2 314 kfrenlee....................eeeeeeeesklkkelekLekllkekfgWd 350
                  + + +ee                    + +  +  ++lk+e+ +L +llke+fgW+
  KKY14323.1 371 GWQKGIEEegggggdekqkdgdtntghlQ-KSHDDTNQLKQEIGNLWRLLKEEFGWE 426
                 **************999999999998852.34445789******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 2943.65
//
Query:       KKY14324.1  [L=162]
Description: putative 40s ribosomal protein s16 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-30  105.9   0.5    7.3e-30  104.0   0.5    1.7  1  Ribosomal_S9  Ribosomal protein S9/S16


Domain annotation for each model (and alignments):
>> Ribosomal_S9  Ribosomal protein S9/S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.0   0.5   4.1e-34   7.3e-30       1     121 []      11     162 .]      11     162 .] 0.90

  Alignments for each domain:
  == domain 1  score: 104.0 bits;  conditional E-value: 4.1e-34
                   EECTTEEEEEEEEESSSEEEETTEECCHHSTTSCHHHHH...................CHHHHHTTTSS..SEEEEEEEESS-HHHHHHHHHHHHHH CS
  Ribosomal_S9   1 GrrKesvArvwikegkgkilvngksleeYfkeeaarekv...................leplkltgllg..kfdvfvkvkgGGlsgqaeAirlgiar 76 
                   G++K+++A +++k+gkg i+vng++l+  ++ e  r kv                   +ep+ ++gl +   +d++v+v+gGG+++q++Air++ia+
    KKY14324.1  11 GKKKTATAVAHCKQGKGLIKVNGQPLSL-VQPEILRFKVgftrstilsqdpahrfkkvYEPILIVGLDKfsGVDIRVRVSGGGHTSQVYAIRQAIAK 106
                   89*************************9.7779999999888888888888888888888999999877645************************* PP

                   HHHHHHH....HH.HHHHC......TCCCTS-B--------TTSSCTTB----S-- CS
  Ribosomal_S9  77 aLvalek....ee.kkeLk......kaglltrDpRvvErkKtgkkkARkkyqwskR 121
                    +va+++    e+ k++Lk      +++ll++D+R++E+kK+g ++AR++yq+s+R
    KKY14324.1 107 SIVAYYQkyvdEYaKNQLKqalvqyDRTLLVADNRRCEPKKFGGPGARARYQKSYR 162
                   *****988887444777776666888****************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      625  (0.0348597); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.31s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1050.59
//
Query:       KKY14325.1  [L=168]
Description: putative 50s ribosomal protein l13 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-42  143.5   0.1    4.6e-42  143.2   0.1    1.1  1  Ribosomal_L13  Ribosomal protein L13


Domain annotation for each model (and alignments):
>> Ribosomal_L13  Ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.2   0.1   2.6e-46   4.6e-42       2     122 ..      16     139 ..      15     141 .. 0.96

  Alignments for each domain:
  == domain 1  score: 143.2 bits;  conditional E-value: 2.6e-46
                    EEEEE..ETTSBHHHHHHHHHHHHHTTTSTT--TTS--S-EEEEEEGGCBB-SSTHHTT-EEEEE-SSTTSEEEEEHHHHHCCSH.HHHHHHHHHC CS
  Ribosomal_L13   2 WyviD..AegqvlgrlaskiakvLrGkhkptytphvdcGdyvvvinaekvaltgkkleqkvyyrhtgypgglkevtakellekkp.eeilekaVkg 94 
                    W+++D   + ++lgr+a++ia++L+Gk+kp+++p++dcGdyvv + + ++ +tgkk +qk yy+ht++pg+lk++++++++ek    e+l++aV+g
     KKY14325.1  16 WHHVDvgSDPRPLGRIATSIAMHLMGKNKPIWHPSTDCGDYVVATGCGDLYTTGKKRQQKQYYTHTTRPGSLKQMSMDQMIEKWGgGEVLKRAVRG 111
                    *****655667************************************************************************8769********* PP

                    CS-SSHHHHHHGCTEEEESSSTTSGGGG CS
  Ribosomal_L13  95 mLpknklgrrrlkrLkvyageehpheaq 122
                    mLpkn+l+++r+ rLkv++g +hp++++
     KKY14325.1 112 MLPKNRLRDKRMARLKVFEGVAHPYKKN 139
                    ************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1100.57
//
Query:       KKY14326.1  [L=301]
Description: putative uricase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-81  271.6   2.1    4.8e-43  146.6   1.3    2.0  2  Uricase   Uricase


Domain annotation for each model (and alignments):
>> Uricase  Uricase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.6   1.3   2.7e-47   4.8e-43       2     129 ..       8     132 ..       7     134 .. 0.96
   2 !  124.2   0.0   2.2e-40     4e-36       2     131 .]     144     290 ..     143     290 .. 0.97

  Alignments for each domain:
  == domain 1  score: 146.6 bits;  conditional E-value: 2.7e-47
                 EEEEEEEEEEEE.EETTCBEBECEEEECCEEEEEESSEEECCHHH-STTT---CCHHHHHHHHHHHHH--SSHH.HHHHHHHHHHHC-TTEEEEEEEEE CS
     Uricase   2 kyGkddvrvlkv.rkstgsafhgfvedevttllegkdrilstyfagdnsdvvasdSvkntvYkmakkhgvespe.Falllakhflekyphveevsvslp 98 
                 +yGkd+vrv+kv r+ + +++h++ e++vt+lleg + i+++y+ +dns vva+dS+knt+Y  ak+h+v++pe Fa++l++hf+e+y+h++++++++ 
  KKY14326.1   8 RYGKDNVRVYKVhRD-EATKTHTVTEMTVTVLLEG-E-IETSYTRADNSVVVATDSMKNTIYIKAKEHPVNPPElFASILGTHFIETYKHIHTANIKVV 103
                 8***********877.5579***************.9.************************************************************* PP

                 EEEEEEEEECCSSEEEEEECEEEECCCCEEE CS
     Uricase  99 nkhwervdlwgtgkphahafvftpsekptgl 129
                 +++w+r+ +  +gkph+h+f +++ ek+ ++
  KKY14326.1 104 QHRWTRIAI--DGKPHPHSFFRDGAEKRIVE 132
                 *********..669*************9875 PP

  == domain 2  score: 124.2 bits;  conditional E-value: 2.2e-40
                 EEEEEEEEEEEEEETTCBEBECEEEECCEEEEEESSEEECC.....................................HHH-STTT---CCHHHHHHHH CS
     Uricase   2 kyGkddvrvlkvrkstgsafhgfvedevttllegkdrilst.....................................yfagdnsdvvasdSvkntvYk 63 
                 ++ ++d++vlk   stgsafh+fv+d++ttl+e++drilst                                     +fa+d+     s+Sv+nt+Yk
  KKY14326.1 144 RSAISDLLVLK---STGSAFHSFVRDDYTTLPEVWDRILSTsidagwkwqiftgldhvkrevpkfdeawqdareitfkTFAEDE-----SASVQNTMYK 234
                 799********...**********************************************************************.....********** PP

                 HHHHH--SSHHHHHHHHHHHHHC-TTEEEEEEEEEEEEEEEEEE.CC..SSEEEEEECEEEECCCCEEEEE CS
     Uricase  64 makkhgvespeFalllakhflekyphveevsvslpnkhwervdl.wg..tgkphahafvftpsekptglie 131
                 m+++               +l+++p ve+v++slpnkh+++v+l w+   +++ ++a+v++p+++p+gli+
  KKY14326.1 235 MCEQ---------------ILAAAPLVEAVDYSLPNKHYFEVNLdWHhgLKNTGKDAEVYAPQSDPNGLIK 290
                 ****...............****************************7734688***************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2013.00
//
Query:       KKY14327.1  [L=1223]
Description: putative cytosolic regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.8e-119  397.7   0.1   2.5e-118  395.3   0.1    2.1  2  RICTOR_N    Rapamycin-insensitive companion of mTOR, N-term
    2.8e-36  124.2   0.1    2.2e-35  121.3   0.0    2.6  3  RasGEF_N_2  Rapamycin-insensitive companion of mTOR RasGEF_N 
    1.5e-33  114.7   0.4    6.7e-32  109.4   0.1    3.8  4  RICTOR_M    Rapamycin-insensitive companion of mTOR, middle d
    8.2e-27   93.2   2.4    4.3e-26   90.9   0.4    3.2  3  RICTOR_V    Rapamycin-insensitive companion of mTOR, domain 5
    9.3e-14   51.3   7.6    2.5e-13   49.9   7.6    1.8  1  HR1         Hr1 repeat
  ------ inclusion threshold ------
       0.15   12.3   3.9       0.34   11.1   3.9    1.5  1  Uds1        Up-regulated During Septation


Domain annotation for each model (and alignments):
>> RICTOR_N  Rapamycin-insensitive companion of mTOR, N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  395.3   0.1  8.2e-122  2.5e-118       1     373 []     169     533 ..     169     533 .. 0.94
   2 ?   -1.4   0.0       0.3   8.8e+02      26      65 ..     847     886 ..     837     890 .. 0.88

  Alignments for each domain:
  == domain 1  score: 395.3 bits;  conditional E-value: 8.2e-122
    RICTOR_N   1 vekandLvkllkrhpelkydlsleellkriqfmLldeskevraagyRilRylisdseslklllklkldiliirSLekdsksevEReqALkLirafleik 99 
                 +e+an+Lv+l+kr+p+lkydl ++ ++ r+q+mLl++++ev+aagyR++Ry+i+d++s++++++ ++d l++ SL k+ k+ +EReqALk++rafl++k
  KKY14327.1 169 IERANKLVELFKRNPTLKYDLAWNVFGVRMQTMLLSDRTEVVAAGYRLTRYAIADRTSIQRIRSHHTDELVTLSLVKKGKAILEREQALKFVRAFLDVK 267
                 689************************************************************************************************ PP

    RICTOR_N 100 kgakelsksvvralvavaehedDrlrricletLaElllldpelvveagGlrvllnalldgsselaesllvallylLdspetrkylrkgldleillspft 198
                 +g++e+s++vvr++v+v eh+dDrlr++c  tL+E+l  d + vv+agG+++l+++l++g++ +++ l++ ll++ d p+ r+ l++g +le++++pft
  KKY14327.1 268 DGVREISRAVVRTIVSVSEHSDDRLRHMCTLTLIEILAKDAATVVAAGGMSTLTDTLSEGTFPASDGLAAGLLHIFDYPSGRRSLKSGRELECVFAPFT 366
                 *************************************************************************************************** PP

    RICTOR_N 199 dslekekkkesneeklqnsakaisslLksWsGlialsmnnfrplksLvsaLripslevrkaildllfdllrikppewsesflagrrltt..ransksqk 295
                 d+l     +  +ee+l+++akai+ +Lk+W+G+++lsm+   +++sL+++L++ps++ ++ il+llfd+lrik+p++ ++flagrrltt  r      +
  KKY14327.1 367 DPLY----AGGQEENLKACAKAIAAMLKTWPGFLTLSMQRALAIRSLLESLKYPSIQAKDLILELLFDVLRIKQPPIFTTFLAGRRLTTygR-----VA 456
                 *555....5667789**************************************************************************654.....33 PP

    RICTOR_N 296 kqeeneaeesaelkkkeserkrenlvdhylallllvlieaglleaLvevieeesdsslsrkatlLlgellklanrlLP 373
                 + +++   es+ + +++    r +l +h++al+l+ ++eagl+ +L+ ++eee+d++++rkatlLl+e+lkla+r LP
  KKY14327.1 457 NVRSEDVLESSAI-ESDYGADRYDLKAHFTALVLATFLEAGLVPSLIALVEEEDDQAIKRKATLLLTEVLKLADRSLP 533
                 3334444444333.3444557999*****************************************************9 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.3
    RICTOR_N  26 llkriqfmLldeskevraagyRilRylisdseslklllkl 65 
                 +lk + + L+d++ ev  ++ Ril  +++++e+l+ ++k 
  KKY14327.1 847 VLKLLLTQLYDPDVEVGETAVRILEEACNKRENLEFVVKC 886
                 677788899***********************99998876 PP

>> RasGEF_N_2  Rapamycin-insensitive companion of mTOR RasGEF_N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.8   5.3e+03       5      47 ..     194     235 ..     191     271 .. 0.68
   2 ?   -3.2   0.0       3.8   1.1e+04      54      81 ..     687     714 ..     676     717 .. 0.73
   3 !  121.3   0.0   7.2e-39   2.2e-35       3     106 ..     844     947 ..     842     949 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.8
  RasGEF_N_2   5 WgiellvnqLydqsrevvaaaleiLeeacddkeslevlvelkp 47 
                 +g+++ +  L+d  +evvaa  ++   a+ d++s++ + + ++
  KKY14327.1 194 FGVRMQTMLLSDR-TEVVAAGYRLTRYAIADRTSIQRIRSHHT 235
                 7777777777655.56777777777777777777777666544 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.8
  RasGEF_N_2  54 eigslLllkllstssGfkylqelnfvee 81 
                 ++g  L+  l +t +G kyl e + +++
  KKY14327.1 687 KAGCALMKSLVKTVEGSKYLIEDKLLRQ 714
                 5677888899999999999977666655 PP

  == domain 3  score: 121.3 bits;  conditional E-value: 7.2e-39
  RasGEF_N_2   3 ekWgiellvnqLydqsrevvaaaleiLeeacddkeslevlvelkpslqhlgeigslLllkllstssGfkylqelnfveeeldkWiekkneeYvklvEea 101
                 ++W+++ll++qLyd++ ev ++a++iLeeac+++e+le +v+++p+l+hlgeig++Lll++lsts G++yl++l+++++e+d+W+  +n  Yv+lvE+ 
  KKY14327.1 844 SQWVLKLLLTQLYDPDVEVGETAVRILEEACNKRENLEFVVKCRPALDHLGEIGAPLLLRFLSTSVGYHYLDNLDYITQEMDDWFLGRNDAYVNLVEAS 942
                 69************************************************************************************************* PP

  RasGEF_N_2 102 laeal 106
                 l++a 
  KKY14327.1 943 LSRAY 947
                 *9986 PP

>> RICTOR_M  Rapamycin-insensitive companion of mTOR, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.79   2.3e+03      29      60 ..     240     272 ..     238     302 .. 0.65
   2 !  109.4   0.1   2.3e-35   6.7e-32       1     103 [.     726     828 ..     726     829 .. 0.98
   3 ?   -1.4   0.0      0.64   1.9e+03      30      51 ..     978     999 ..     974    1016 .. 0.80
   4 ?   -0.7   0.0      0.41   1.2e+03      26      43 ..    1065    1082 ..    1023    1090 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.79
    RICTOR_M  29 vlsssknGlklLekwkiftllyklvelks.rdd 60 
                 +ls  k+G ++Le+ +  + +   ++ k+  ++
  KKY14327.1 240 TLSLVKKGKAILEREQALKFVRAFLDVKDgVRE 272
                 678889999999998888877777666654333 PP

  == domain 2  score: 109.4 bits;  conditional E-value: 2.3e-35
    RICTOR_M   1 sgvsagepllskerleetlsrgYfkfiGvlsssknGlklLekwkiftllyklvelksrddllklilssldysvdghiRiilskaLtnssekiRlyatkh 99 
                 sg++++ p++s++ +++ +s gYf+++G ls++++G+ ++e+w++++++y++++l++r dl++++l+++dys ++h+R++lskaLt++ +++Rl+at++
  KKY14327.1 726 SGITSSTPIFSRAGMTSSMSGGYFQMLGALSTEPRGIVMMERWHMINMFYHIIDLHDRPDLIQALLANMDYSSESHLRVMLSKALTAGAKDTRLIATRL 824
                 688999********************************************************************************************* PP

    RICTOR_M 100 Lrkl 103
                 Lrk+
  KKY14327.1 825 LRKY 828
                 **97 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.64
    RICTOR_M  30 lsssknGlklLekwkiftllyk 51 
                 l ++++G +lL++++ f  + +
  KKY14327.1 978 LARTSEGCRLLRQSGHFYEFAS 999
                 7899*********988876655 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.41
    RICTOR_M   26 fiGvlsssknGlklLekw 43  
                   +G++s+s++Gl+++ ++
  KKY14327.1 1065 VLGLISRSAHGLEMIMEH 1082
                  479999999999887655 PP

>> RICTOR_V  Rapamycin-insensitive companion of mTOR, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.2   3.6e+03      46      66 ..     746     766 ..     741     782 .. 0.65
   2 ?   -0.9   0.0      0.66     2e+03      55      69 ..     978     992 ..     977     992 .. 0.89
   3 !   90.9   0.4   1.4e-29   4.3e-26       1      71 []    1015    1085 ..    1015    1085 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.2
    RICTOR_V  46 GtafyvLglissteegaeiLd 66 
                 G  f +Lg +s+  +g+ +++
  KKY14327.1 746 GGYFQMLGALSTEPRGIVMME 766
                 555666666666666665554 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.66
    RICTOR_V  55 issteegaeiLdelg 69 
                 +++t+eg+++L++ g
  KKY14327.1 978 LARTSEGCRLLRQSG 992
                 69*********9876 PP

  == domain 3  score: 90.9 bits;  conditional E-value: 1.4e-29
    RICTOR_V    1 lklKaaLWaiGhigsselGielldeydivedivelaeespvlslRGtafyvLglissteegaeiLdelgWe 71  
                  lk+K++LWaiG++gs+elG+++l+e+++v++i+++ae+++v+slRGta++vLglis++++g e++ e+gW+
  KKY14327.1 1015 LKIKGCLWAIGNVGSMELGAPFLEESEVVSSIIRIAEQAQVMSLRGTACFVLGLISRSAHGLEMIMEHGWD 1085
                  589*******************************************************************6 PP

>> HR1  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   7.6   8.5e-17   2.5e-13       3      64 ..      39     101 ..      37     106 .. 0.91

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 8.5e-17
         HR1   3 eelekklekElkireGAenllralesk.ktqnkkvrqeaeselsesnskielLreqLeelqas 64 
                 + ++ k++kE+ki+ G en+l++l +k ++q +++r ++e+els+sn+ki+ L+ +Lee +++
  KKY14327.1  39 AVVMGKIAKETKIKLGTENMLEVLLTKnSKQTREQRLKVENELSSSNRKIAALKLELEEEMQR 101
                 56788**********************9*****************************887774 PP

>> Uds1  Up-regulated During Septation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.9   0.00011      0.34      35     114 ..      36     104 ..      31     107 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
        Uds1  35 erlealrkkLaletklrdaarsLsrlyssskksakssaarsnskssreslakaeeelaeserkvdelaselekleeraae 114
                 +r   +  k+a etk++ +++++ ++  +++++           ++re+ +k e+el++s+rk+ +l+ ele+  +ra++
  KKY14327.1  36 QRQAVVMGKIAKETKIKLGTENMLEVLLTKNSK-----------QTREQRLKVENELSSSNRKIAALKLELEEEMQRANS 104
                 566667778999999999999999988444444...........67889************************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.48
# Mc/sec: 7673.82
//
Query:       KKY14328.1  [L=360]
Description: putative atp-dependent protease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-26   92.6   0.0    4.1e-26   92.2   0.0    1.2  1  LON_substr_bdg  ATP-dependent protease La (LON) substrate-bin
      5e-12   45.5   9.4    1.4e-11   44.1   9.4    1.8  1  zf-C3HC4_2      Zinc finger, C3HC4 type (RING finger)
    8.4e-09   35.2   6.9    8.4e-09   35.2   6.9    1.6  1  zf-C3HC4_3      Zinc finger, C3HC4 type (RING finger)
      3e-08   33.9   8.4      3e-08   33.9   8.4    2.1  2  zf-RING_2       Ring finger domain
      2e-07   30.9   6.9    1.5e-06   28.1   6.9    2.3  1  zf-RING_UBOX    RING-type zinc-finger
    2.8e-07   30.3   8.8    2.8e-07   30.3   8.8    1.9  2  zf-C3HC4        Zinc finger, C3HC4 type (RING finger)
    7.1e-07   29.3   8.2    1.8e-06   28.0   8.2    1.7  1  zf-C3HC4_4      zinc finger of C3HC4-type, RING
    3.3e-06   27.0   8.7    3.3e-06   27.0   8.7    1.8  1  zf-RING_5       zinc-RING finger domain
    6.4e-05   22.5   5.8    0.00015   21.3   5.8    1.7  1  zf-P11          P-11 zinc finger
    0.00041   20.4   6.3    0.00074   19.6   6.3    1.4  1  zf-RING_10      zinc RING finger of MSL2
     0.0016   18.7   6.8     0.0043   17.3   6.8    1.7  1  zf-rbx1         RING-H2 zinc finger domain
     0.0026   17.5   9.0     0.0026   17.5   9.0    2.5  2  zf-RING_4       RING/Ubox like zinc-binding domain
     0.0034   17.2   8.0     0.0084   15.9   8.0    1.6  1  Prok-RING_4     Prokaryotic RING finger family 4
     0.0034   17.5   0.0     0.0068   16.6   0.0    1.4  1  U-box           U-box domain
  ------ inclusion threshold ------
      0.015   15.0   0.3      0.015   15.0   0.3    2.2  2  zinc_ribbon_2   zinc-ribbon domain
       0.14   12.3   2.4       0.28   11.3   2.4    1.5  1  zf-ANAPC11      Anaphase-promoting complex subunit 11 RING-H2
       0.92    9.5   8.9        1.9    8.6   8.9    1.5  1  zinc-ribbons_6  zinc-ribbons
       0.94    9.3   5.5          2    8.3   5.5    1.5  1  zf-Nse          Zinc-finger of the MIZ type in Nse subunit
        1.4    8.9   5.1        2.8    7.9   5.1    1.4  1  zf-RING_6       zf-RING of BARD1-type protein
        1.6    8.8   9.8          8    6.6   9.9    2.0  1  DZR             Double zinc ribbon
        4.9    7.1   6.9        2.6    8.0   3.6    2.0  2  Ribosomal_L40e  Ribosomal L40e family
        8.2    6.6  16.5        4.5    7.4   8.5    3.2  3  DUF1272         Protein of unknown function (DUF1272)
        9.7    6.4   9.9       0.34   11.0   0.5    2.5  2  UPF0547         Uncharacterised protein family UPF0547


Domain annotation for each model (and alignments):
>> LON_substr_bdg  ATP-dependent protease La (LON) substrate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   0.0   5.2e-29   4.1e-26       3     206 ..     135     352 ..     133     354 .. 0.86

  Alignments for each domain:
  == domain 1  score: 92.2 bits;  conditional E-value: 5.2e-29
  LON_substr_bdg   3 pllpldnkvlfPgitlpltvsrpksiaaierlldkdkpyigvflvkesqkdaide.esiselysvGtvarIvqilrlddgrikvvlegleRvkik 96 
                     p++p+  ++ +P +++ l++++p+++ +i+r++++++ ++g++++  ++++  +   +  ++ ++Gt+ +I+ ++ l+dgr+ + ++g++R+ki 
      KKY14328.1 135 PIFPC--TLAYPCMPTFLHIFEPRYRLMIRRAVESGQGKFGMVMY--NRRGMPQGsFGVVDYKQYGTMLQIQSLEMLPDGRSLIETRGISRFKIL 225
                     89999..899*************************9999******..999999998999999********************************* PP

  LON_substr_bdg  97 klekekeegylvaeveiieddsepedsdslqkelkalvqe.........................iiekikkslarellkllleielllkyedle 166
                     +  +   +gylva++++i+d   +  ++++ +++++ +                           +i+k      r ++  +l   +l  y + +
      KKY14328.1 226 ETGM--LDGYLVAKTQKIDDI--SLNEEENMEAIETSTAVapadpdilppleslstqellhaglaFISKG-----RDASEPWLHERILAAYGQPP 311
                     **88..9***********774..33333333566666666666788777666665445555544455555.....59****************** PP

  LON_substr_bdg 167 npyr.LadlvaailpfsneekqelLeeldvedRlkkvlelL 206
                     n ++ + +++a +lp+s+eek++lL   +v+ Rlk+v+ ++
      KKY14328.1 312 NDAAvFPYWLACVLPISEEEKYQLLMITSVRGRLKIVVGWV 352
                     *************************************9886 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   9.4   1.8e-14   1.4e-11       1      40 []      45      83 ..      45      83 .. 0.98

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 1.8e-14
  zf-C3HC4_2  1 kCpiCldmlkdpsvvtpCgHvfCqkCilrsLeekneCPlC 40
                +C+iC++   dp  +t+CgH+fC+kC++r L++++ CP C
  KKY14328.1 45 ECQICYALVLDP-LTTNCGHTFCRKCVARVLDHSKLCPAC 83
                6***********.99************************* PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   6.9   1.1e-11   8.4e-09       2      47 ..      43      87 ..      42      90 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.1e-11
                GSB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHHTT-B-TTT--B- CS
  zf-C3HC4_3  2 deeCviClerprnvvllpCgHlvlCeeCaekllkrkkkCpiCrrpi 47
                + eC+iC+    + +  +CgH+ +C +C+ ++l+++k Cp Cr+p 
  KKY14328.1 43 ELECQICYALVLDPLTTNCGHT-FCRKCVARVLDHSKLCPACRQPL 87
                579*******************.*********************96 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   8.4   3.8e-11     3e-08       2      44 .]      45      84 ..      44      84 .. 0.85
   2 ?   -2.3   0.0       7.4   5.8e+03      10      22 ..     128     140 ..     126     155 .. 0.57

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 3.8e-11
   zf-RING_2  2 eCpICleelssadsvlllpCgHvfhreClerwlrssstCPlCr 44
                eC IC+  +   d +++  CgH+f+r+C++r l +s+ CP+Cr
  KKY14328.1 45 ECQICYALVL--DPLTTN-CGHTFCRKCVARVLDHSKLCPACR 84
                8****84443..666665.***********************9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.4
   zf-RING_2  10 lssadsvlllpCg 22 
                 l +++++++ pC 
  KKY14328.1 128 LGREENTPIFPCT 140
                 5566666666673 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   6.9   1.9e-09   1.5e-06       1      39 []      46      81 ..      46     101 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.9e-09
  zf-RING_UBOX  1 CpIClelftdPlv.lpCGHtFCreClwelskslegafkCP 39
                  C IC+ l  dP + ++CGHtFCr+C+    + l+ +  CP
    KKY14328.1 46 CQICYALVLDP-LtTNCGHTFCRKCV---ARVLDHSKLCP 81
                  *****9999**.7369**********...55555555555 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   8.8   3.6e-10   2.8e-07       1      41 []      46      83 ..      46      83 .. 0.94
   2 ?   -2.9   0.1       8.5   6.6e+03      24      31 ..     100     107 ..      99     111 .. 0.73

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 3.6e-10
                -TTT-S--SS-E.E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4  1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41
                C+iC   + +p  +++C+H+fC+kC+ ++l+   ++ CP C
  KKY14328.1 46 CQICYALVLDPL-TTNCGHTFCRKCVARVLD--HSKLCPAC 83
                ************.******************..4455**** PP

  == domain 2  score: -2.9 bits;  conditional E-value: 8.5
                 HHHHHHHH CS
    zf-C3HC4  24 kCirkilk 31 
                 kCi+ +l+
  KKY14328.1 100 KCITALLQ 107
                 89998887 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   8.2   2.3e-09   1.8e-06       1      42 []      46      83 ..      46      83 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2.3e-09
  zf-C3HC4_4  1 CPiCldYLekPvsleCGhsfClsCisslqkepdgeqllCplC 42
                C iC ++  +P + +CGh+fC +C+ ++  ++     lCp C
  KKY14328.1 46 CQICYALVLDPLTTNCGHTFCRKCVARVLDHS----KLCPAC 83
                9**************************98877....479999 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   8.7   4.2e-09   3.3e-06       1      44 []      45      85 ..      45      85 .. 0.97

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 4.2e-09
   zf-RING_5  1 hCnkCfeklskeekfyltsCgHifCekClkkllekeavCpiCrk 44
                +C++C+  +    ++ +t+CgH+fC kC+ + l  ++ Cp+Cr+
  KKY14328.1 45 ECQICYALV---LDPLTTNCGHTFCRKCVARVLDHSKLCPACRQ 85
                6********...9*****************************97 PP

>> zf-P11  P-11 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   5.8   1.9e-07   0.00015       3      47 ..      44      89 ..      42      91 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.9e-07
                SSBTTTSS.--SSEEE-SSSEEEHHHHHHHHHHSSBETTTSSB--- CS
      zf-P11  3 lsCksCWf.kdksLveCsdHYLClrClqllLsvserCpiCkkPLPt 47
                l C+ C+    + L +   H  C++C   +L  s++Cp C++PLP 
  KKY14328.1 44 LECQICYAlVLDPLTTNCGHTFCRKCVARVLDHSKLCPACRQPLPM 89
                5788888524688888889**************************5 PP

>> zf-RING_10  zinc RING finger of MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   6.3   9.5e-07   0.00074       1      44 [.      44      84 ..      44     108 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 9.5e-07
  zf-RING_10  1 lsCvvCckLLvdPlepkekeCqHyvCrlCvgkkkklkpsCsqCk 44
                l C +C  L+ dPl+    +C+H  Cr+Cv +       C+ C+
  KKY14328.1 44 LECQICYALVLDPLTT---NCGHTFCRKCVARVLDHSKLCPACR 84
                68***********986...9*********997555555555554 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   6.8   5.5e-06    0.0043      17      55 .]      49      84 ..      35      84 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 5.5e-06
     zf-rbx1 17 ckapgdeecpvvlGeCgHaFHlhCiskWlktrkvCPlcr 55
                c a       + + +CgH+F  +C+ + l+++k CP cr
  KKY14328.1 49 CYALV---LDPLTTNCGHTFCRKCVARVLDHSKLCPACR 84
                33333...446677************************8 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   9.0   3.4e-06    0.0026      19      46 ..      60      86 ..      38      87 .. 0.93
   2 ?   -2.2   0.0       4.9   3.8e+03      11      23 ..     132     144 ..     126     154 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.4e-06
   zf-RING_4 19 eCgyqiClfCyhrileeeegrCPaCree 46
                +Cg+ +C+ C  r+l ++++ CPaCr++
  KKY14328.1 60 NCGHTFCRKCVARVL-DHSKLCPACRQP 86
                7**************.57********97 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.9
   zf-RING_4  11 tdkdlkpCeCgyq 23 
                 +++ ++pC+  y 
  KKY14328.1 132 ENTPIFPCTLAYP 144
                 5567899986664 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   8.0   1.1e-05    0.0084       1      39 [.      46      86 ..      46      90 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.1e-05
  Prok-RING_4  1 CvlCgeqekkailepCgHlvCkeCfdsk.dls.sCPlCqrr 39
                 C +C     ++    CgH +C++C     d+s  CP C++ 
   KKY14328.1 46 CQICYALVLDPLTTNCGHTFCRKCVARVlDHSkLCPACRQP 86
                 888888888999999**********999888889****985 PP

>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   8.8e-06    0.0068       4      52 ..      43      90 ..      41     100 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 8.8e-06
                GGB-TTT-SB-SSEEEETTTEEEEHHHHHHHHTT.SSB-TTT-SB--GG CS
       U-box  4 efldpitlelmkdPvilpsgvvvdrstiekhllsrdktdPftrepltqd 52
                e+ ++i + l  dP  +  g+++ r+ +++ l++ +k +P  r+pl+++
  KKY14328.1 43 ELECQICYALVLDPLTTNCGHTFCRKCVARVLDH-SKLCPACRQPLPMA 90
                788*******************************.***********986 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2       1.8   1.4e+03       4       7 ..      60      63 ..      59      64 .. 0.54
   2 ?   15.0   0.3   1.9e-05     0.015       1      23 []      65      87 ..      65      87 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.8
  zinc_ribbon_2  4 nCGa 7 
                   nCG+
     KKY14328.1 60 NCGH 63
                   6665 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.9e-05
  zinc_ribbon_2  1 fCpnCGaelqdnakFCpyCGtpl 23
                   fC +C a + d +k Cp C+ pl
     KKY14328.1 65 FCRKCVARVLDHSKLCPACRQPL 87
                   9*******************997 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00035      0.28      50      81 ..      59      87 ..      39      91 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00035
                BTTS-EEEHHHHHHHHHHHSTSSB-TTTSSB- CS
  zf-ANAPC11 50 Gkckhnfhlhcilkwletetskglcpmcrqtf 81
                 +c h+f  +c+ + l+++   +lcp crq +
  KKY14328.1 59 TNCGHTFCRKCVARVLDHS---KLCPACRQPL 87
                68**************975...59******76 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   8.9    0.0024       1.9       3      42 ..      46      90 ..      37     101 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0024
                    -SSS-S--EE-S.........SEEE-TTT--.EEEEEEE-SSS-S---EE CS
  zinc-ribbons_6  3 CpeCqqelekrg.........eqyhCeaCqe.dlkkealCpeCeqelevl 42
                    C+ C +                +++C++C +  l+  +lCp C+q+l + 
      KKY14328.1 46 CQICYA-----LvldplttncGHTFCRKCVArVLDHSKLCPACRQPLPMA 90
                    555554.....033333455699******873678899********9765 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.5    0.0025         2       9      56 ..      41      83 ..      32      84 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0025
                BXXSB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC- CS
      zf-Nse  9 rislkCPltlqpfeePvtskkCpHvFEreaIlelikrkktvkCPvagC 56
                +++l+C +    + +P+t ++C H+F r+ + +++   +++ CP   C
  KKY14328.1 41 QAELECQICYALVLDPLT-TNCGHTFCRKCVARVL--DHSKLCPA--C 83
                67899***********98.79**************..88888998..6 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   5.1    0.0036       2.8       8      49 ..      44      86 ..      39      90 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0036
   zf-RING_6  8 lrcsrctdilrepvclggcehifcsncisdcfgsg..cpvcytp 49
                l c  c  ++ +p+    c h fc  c++  +     cp c  p
  KKY14328.1 44 LECQICYALVLDPLT-TNCGHTFCRKCVARVLDHSklCPACRQP 86
                789999999999986.68***********998643349**9887 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   9.9      0.01         8       1      23 [.      66      88 ..      40     112 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.01
         DZR  1 CpqCgeelppdarfCseCgtklk 23
                C +C + + ++++ C++C+++l+
  KKY14328.1 66 CRKCVARVLDHSKLCPACRQPLP 88
                55666666666666666666664 PP

>> Ribosomal_L40e  Ribosomal L40e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2      0.12        96      19      34 ..      46      62 ..      37      64 .. 0.84
   2 ?    8.0   3.6    0.0034       2.6      12      33 ..      59      80 ..      56      85 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.12
  Ribosomal_L40e 19 CrkCYA.rlpprAtnCr 34
                    C+ CYA  l p +tnC 
      KKY14328.1 46 CQICYAlVLDPLTTNCG 62
                    999***45899999995 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0034
  Ribosomal_L40e 12 yncdKmiCrkCYArlpprAtnC 33
                    +nc    CrkC Ar   +++ C
      KKY14328.1 59 TNCGHTFCRKCVARVLDHSKLC 80
                    7999**********99999887 PP

>> DUF1272  Protein of unknown function (DUF1272)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   8.5    0.0057       4.5      28      48 ..      62      84 ..      33      88 .. 0.72
   2 ?    2.9   0.1      0.15   1.2e+02      34      46 ..     100     112 ..      98     114 .. 0.90
   3 ?   -1.4   0.1       3.4   2.6e+03      27      42 ..     137     152 ..     130     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0057
     DUF1272 28 EctFCaeCaeevl..envCPncg 48
                 +tFC++C+ +vl  ++ CP c 
  KKY14328.1 62 GHTFCRKCVARVLdhSKLCPACR 84
                46***********65578****6 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.15
     DUF1272  34 eCaeevlenvCPn 46 
                 +C +++l++ CP+
  KKY14328.1 100 KCITALLQGLCPD 112
                 8***********7 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 3.4
     DUF1272  27 yEctFCaeCaeevlen 42 
                 + ct   +C+ + l+ 
  KKY14328.1 137 FPCTLAYPCMPTFLHI 152
                 88***99**9998875 PP

>> UPF0547  Uncharacterised protein family UPF0547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   3.2       2.7   2.1e+03      14      24 ..      46      65 ..      40      69 .. 0.81
   2 ?   11.0   0.5   0.00043      0.34       1      15 [.      78      92 ..      78      93 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.7
     UPF0547 14 aqfC.........phCGyvF 24
                +q+C           CG+ F
  KKY14328.1 46 CQICyalvldpltTNCGHTF 65
                78888888888886699988 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00043
     UPF0547  1 KvCPeCeakvPvaaq 15
                K CP C++++P aa 
  KKY14328.1 78 KLCPACRQPLPMAAG 92
                67***********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2581.18
//
Query:       KKY14329.1  [L=578]
Description: putative kynureninase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-08   32.4   0.0    7.5e-08   31.7   0.0    1.2  1  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
       0.02   13.4   0.0      0.031   12.8   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   8.3e-12   7.5e-08     123     206 ..     256     344 ..     244     359 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 8.3e-12
                  TTSCBEGGGHHHH-...-TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTT..TTSST CS
  Aminotran_5 123 eegeldldelekll...nektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghK..llgPt 206
                   + ++ l+++ +++   + +t+l+ +  ++  tG  +++++i+++a+ kg+lv  D a avg  p+++++++vDf++  + K  + gP 
   KKY14329.1 256 GQSTIALEQIISTIddhATTTSLILLPGIQFYTGQYFDINAITRHAHSKGILVGWDLAHAVGNVPVKLHEWDVDFAVWCTYKylNSGPG 344
                  5667778888888844346789999999****************************************************996444665 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.4e-06     0.031     137     235 ..     275     374 ..     257     379 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.4e-06
                      TEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHT.TTS-GGGGT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHHHH CS
  Cys_Met_Meta_PP 137 ntklvylEtptnpllkvvDiekiaklakkagvlvvvDntfasp.llqrplklgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflqna 229
                       t+l++l  +   + +  Di++i++ a+++g+lv  D + a + + ++  ++++D  v  + Kyl+    ++aG+ v + + + + + +  ++ 
       KKY14329.1 275 TTSLILLPGIQFYTGQYFDINAITRHAHSKGILVGWDLAHAVGnVPVKLHEWDVDFAVWCTYKYLNSGPGAIAGLFVHERHGNPDCHPTSSEDP 368
                      577777777888888999*********************9999778888899*************************98877777777777777 PP

                      HT-B-- CS
  Cys_Met_Meta_PP 230 lGavls 235
                      +G+v+s
       KKY14329.1 369 TGSVVS 374
                      777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 3527.01
//
Query:       KKY14330.1  [L=1175]
Description: hypothetical protein UCRPC4_g06785 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.52
# Mc/sec: 6747.86
//
Query:       KKY14331.1  [L=286]
Description: putative oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-52  177.3   0.1    3.3e-52  176.8   0.1    1.1  1  adh_short        short chain dehydrogenase
    8.1e-34  117.2   0.1    1.1e-33  116.8   0.1    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    5.5e-13   49.2   0.0    8.1e-13   48.7   0.0    1.3  1  KR               KR domain
     0.0061   15.7   0.1      0.012   14.8   0.1    1.6  1  Polysacc_synt_2  Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.8   0.1   7.3e-56   3.3e-52       1     186 [.       8     203 ..       8     208 .. 0.95

  Alignments for each domain:
  == domain 1  score: 176.8 bits;  conditional E-value: 7.3e-56
                 SEEEEESTTSHHHHHHHHHHHHTT...-EEEEEESCHHHHHHHHHHHHHT...TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SS CS
   adh_short   1 kvvlvtGassGIGraiakelakeG...akvvvvdrseekleevakelkee...gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgp 92 
                 k+vl+tGassGIGr +a e+a+      k+++++r+ e+l+++a+e+k+e   g k+l++q+Dv++ +ev+ +v +  ++++ +d+LvnNAG+ +g+++
  KKY14331.1   8 KTVLITGASSGIGRSTAFEFARTSpnaLKLILTARRVETLKQIAAEIKKEvgdGVKVLPVQLDVSKPNEVSSFVPTLPDEFKDIDILVNNAGLvKGVAE 106
                 79*******************96422267888*******************9999**************************************99999* PP

                 GGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH...HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHH CS
   adh_short  93 fselseeewervievNltgvflltravlpaml...kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdm 186
                 + ++  e++e ++++N+tg++++t+a+lp ++   +  +G+I+n++S+ag++p++g++ Y+A+Kaav+++t++l++el  t+ir++ + PG v+T++
  KKY14331.1 107 APSIATEDIETMFSTNVTGLINMTQAILPIFKkkgETGAGDIINIGSIAGREPYKGGSIYCATKAAVRSFTDALRRELIATRIRIIEIDPGQVETEF 203
                 ********************************8888889********************************************************97 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8   0.1   2.4e-37   1.1e-33       1     227 [.      14     250 ..      14     252 .. 0.88

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 2.4e-37
                   TTTTSHHHHHHHHHHH...TT-EEEEEESSGGH.HHHHHHHHHHTTSEE....EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGG CS
  adh_short_C2   1 GaasgIGraiAkalae...eGaevvltdlneea.kkrveelaeelgaev....lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfle 89 
                   Ga sgIGr +A ++a+   +  +++lt ++ e  k+ ++e+++e+g  v    +++DV+++++v ++v ++ ++f+ +Dilvnnag ++   +++ +
    KKY14331.1  14 GASSGIGRSTAFEFARtspNALKLILTARRVETlKQIAAEIKKEVGDGVkvlpVQLDVSKPNEVSSFVPTLPDEFKDIDILVNNAGLVKG-VAEAPS 109
                   899***********99333457899**9999999999999****996634489************************************9.888889 PP

                   H-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC.....CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGG CS
  adh_short_C2  90 tsreefdraldvnlyslfllakaalplmkeg.....gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasg 181
                   +  e++++++++n+++l+++++a+lp++k++     g i+n+ s++++   ++ ++y+a+Kaa+ ++t +l +el + +iR+  + pg ++T+ +  
    KKY14331.1 110 IATEDIETMFSTNVTGLINMTQAILPIFKKKgetgaGDIINIGSIAGREPYKGGSIYCATKAAVRSFTDALRRELIATRIRIIEIDPGQVETEFSV- 205
                   999***********************998877999999******************************************************9943. PP

                   STTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEE CS
  adh_short_C2 182 ikgfdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtl 227
                   + +f   +++++a +   +  tp+++ae+++f a  + + +   tl
    KKY14331.1 206 V-RFYGDKSKADAVYAGVEPLTPDDIAEVIVFAAGRRENVVIADTL 250
                   2.23333444555555556789**********99988887776665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   1.8e-16   8.1e-13       2     159 ..       9     176 ..       8     195 .. 0.83

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 1.8e-16
                 EEEEETTTSHHHHHHHHHHHHHH..S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------.---T CS
          KR   2 tylitGGlGgLGlelarwlaekg..arhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr.dkll 97 
                 t+litG+  g+G+++a   a+    a +l+l++R+ ++ ++ +a+i++    g++v  v++Dvs++++v++ + ++ +e++ i   ++ Ag+++  +  
  KKY14331.1   9 TVLITGASSGIGRSTAFEFARTSpnALKLILTARRVETLKQIAAEIKKEVGDGVKVLPVQLDVSKPNEVSSFVPTLPDEFKDIDILVNNAGLVKgVAEA 107
                 78******************9887799*********99999999***9999****************************************99856788 PP

                 TT--HHHHHHHHTTTTHHHHHHHHHTTT.......S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHH CS
          KR  98 eemtaedleqvlapKvkGawnLhelled.......esldffvlfSSiagllgsagqanYaaaNaflDal 159
                  +  +ed+e++++  v+G+ n+ +++ +       +    ++ + Siag    +g + Y a+ a + ++
  KKY14331.1 108 PSIATEDIETMFSTNVTGLINMTQAILPifkkkgeTGAGDIINIGSIAGREPYKGGSIYCATKAAVRSF 176
                 99**********************987655434333334456666666666666666665555555554 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   2.6e-06     0.012       1     115 [.      10     133 ..      10     211 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.6e-06
                      EEEETTTSHHHHHHHHHHHHH..B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT.......T-SEEEE---. CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkk..kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel.....kvdvvfhaAA. 86 
                      vl+tGa+  iG++   +++++  ++ k+il  r   +l +i+ e+++e+ +  +  +++pv  dv + +++++ + +l     ++d++++ A  
       KKY14331.1  10 VLITGASSGIGRSTAFEFARTspNALKLILTARRVETLKQIAAEIKKEVGD-GV--KVLPVQLDVSKPNEVSSFVPTLpdefkDIDILVNNAGl 100
                      89******************9444457889999999********9888887.45..778**********9999886532222268887776652 PP

                      ---H...HHHH.HSHHHHHHHHHHHHHHHHHHH CS
  Polysacc_synt_2  87 lKhV...Plve.enpleaiktNvlgtenvieaa 115
                      +K V   P +  e +  +++tNv+g  n+ +a 
       KKY14331.1 101 VKGVaeaPSIAtEDIETMFSTNVTGLINMTQAI 133
                      577733344440444556688999988887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.52
# Mc/sec: 1650.09
//
Query:       KKY14332.1  [L=212]
Description: putative ras small monomeric gtpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-59  200.3   0.1    1.7e-59  200.1   0.1    1.1  1  Ras           Ras family
    1.7e-20   73.5   0.0    2.5e-20   72.9   0.0    1.2  1  Roc           Ras of Complex, Roc, domain of DAPkinase
    2.2e-08   33.8   0.0    2.4e-08   33.6   0.0    1.1  1  Arf           ADP-ribosylation factor family
    2.9e-06   27.0   0.1    2.5e-05   23.9   0.0    1.9  2  GTP_EFTU      Elongation factor Tu GTP binding domain
      7e-05   22.8   0.4       0.23   11.4   0.0    2.4  2  RsgA_GTPase   RsgA GTPase
     0.0023   18.0   0.0     0.0035   17.4   0.0    1.3  1  MMR_HSR1      50S ribosome-binding GTPase
     0.0038   16.8   0.0      0.006   16.1   0.0    1.3  1  FeoB_N        Ferrous iron transport protein B
      0.005   16.8   0.0       0.01   15.9   0.0    1.5  1  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
  ------ inclusion threshold ------
       0.31   10.8   1.6        3.8    7.2   0.0    2.1  2  ATP_bind_1    Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.1   0.1   8.4e-63   1.7e-59       1     161 [.      10     170 ..      10     171 .. 0.99

  Alignments for each domain:
  == domain 1  score: 200.1 bits;  conditional E-value: 8.4e-63
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 Klv+vG ++vGK++l+++ ++++F +ey++Ti +d+y+k++ +d++ + l+++DTAGqee++++re+y+r++eg+llvy+itsr+sfe++ ++ ++i r
  KKY14332.1  10 KLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTI-EDSYRKQCVIDEEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILR 107
                 99******************************.****************************************************************** PP

                 HST.TTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 100 vae.envpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                 v++ + +pi++vGnK+Dle++r+vs++ege+la+++g++f+etSAk++ nv++af++l+rei+
  KKY14332.1 108 VKDkDYFPIIVVGNKCDLESERQVSKQEGESLARSFGCRFIETSAKSRINVDNAFYDLVREIR 170
                 **97789*****************************************************996 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.0   1.2e-23   2.5e-20       1     120 []      10     125 ..      10     125 .. 0.87

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 1.2e-23
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K+v+vG +gvGK++l  ++++++f +++++ti  ++ + +++ i+     ++     l++ DtaGqe+++++++ y+r  + ++lvy    ++s+e++ 
  KKY14332.1  10 KLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTIEDSYRK-QCV-ID-----EE--VALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSitsRQSFEEIM 99 
                 99*******************************99865.553.33.....23..4689*****************************965344568889 PP

                 HHHHHHHHHCSSS..-EEEEEE-TTT CS
         Roc  97 eWlkelkkvagks..pvilvgnkiDl 120
                 +  +++ +v +k+  p+i+vgnk+Dl
  KKY14332.1 100 TFQQQILRVKDKDyfPIIVVGNKCDL 125
                 999***9999987779********95 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.2e-11   2.4e-08      13     140 ..       7     135 ..       1     169 [. 0.77

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.2e-11
                 TEEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEEEEEE..TTEE.EEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHH CS
         Arf  13 kelrilllGLDnaGKtTilkklkleelvt.tvPTigfnveelei..knlk.ftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkal 107
                 +e++++++G  + GK+ +  +l + ++v+   PTi    ++  +  +++  + v D  Gqe+   + ++Y+++ ++ + v   + r+ +ee  +  +++
  KKY14332.1   7 REYKLVVVGGGGVGKSCLTIQLIQSHFVDeYDPTIEDSYRKQCVidEEVAlLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQI 105
                 89****************99998888765389***987765333224554278999******************************************* PP

                 CTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHT CS
         Arf 108 leeeelkevallvlaNKqDlpealseeelrell 140
                 l+ ++    +++v++NK Dl++  + +   ++ 
  KKY14332.1 106 LRVKDKDYFPIIVVGNKCDLESERQVS---KQE 135
                 ********************8654433...333 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.12   2.4e+02       6      27 ..      11      32 ..       7      54 .. 0.79
   2 !   23.9   0.0   1.3e-08   2.5e-05      67     141 ..      53     134 ..      40     179 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.12
                EEEEESTTSSHHHHHHHHHHHT CS
    GTP_EFTU  6 igiighvDhGKtTLtdrLlykt 27
                ++++g    GK++Lt +L++++
  KKY14332.1 11 LVVVGGGGVGKSCLTIQLIQSH 32
                678899999******9999765 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 1.3e-08
                 CSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETT.....TBSTHHHHHHHHHHHHTTTEEEEEEESCGST..HHHHHH CS
    GTP_EFTU  67 tkkylinliDtPGHvdFskevirglrvlDgavlvvdav.....eGvepqteevlrlalkegvpiivfiNKmDrl..kaelke 141
                 ++  l+ ++Dt G +++s   ++ +r+ +g +lv +++     e +++  +++lr+  k   piiv+ NK+D    ++  k+
  KKY14332.1  53 EEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITsrqsfEEIMTFQQQILRVKDKDYFPIIVVGNKCDLEseRQVSKQ 134
                 56678899*****************************97777777***************************9743222222 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1    0.0005      0.99      97     122 ..       6      31 ..       2      52 .. 0.84
   2 !   11.4   0.0   0.00011      0.23      33      91 ..      99     159 ..      81     171 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0005
                  CTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  97 lkdktsvlvGqSGvGKStLinallpe 122
                  l++   v+vG  GvGKS L  +l+++
   KKY14332.1   6 LREYKLVVVGGGGVGKSCLTIQLIQS 31 
                  66777899***********9888765 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00011
                  HHHHHHHHHHHHTT-.EEEEEEE-GGG--HHH.HHHHHHHHHHHTTSEEEE--TTTHTTHH CS
  RsgA_GTPase  33 nlldrfLvlaeekgi.epvivlnKiDlleeee.eleelkeelealgyevllvsaktkegle 91 
                   + ++ ++ +++k+  ++++v nK+Dl +e++ + +e ++  +++g++++ +sak++ +++
   KKY14332.1  99 MTFQQQILRVKDKDYfPIIVVGNKCDLESERQvSKQEGESLARSFGCRFIETSAKSRINVD 159
                  3445666667777762555566**********666777788999**********9887776 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.8e-06    0.0035       2     114 .]      11     122 ..      10     122 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.8e-06
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT..EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT...TTCSHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg..keielvDtpGliegaseekglgkaflaleeadlillvvdas...eeklkplde 95 
                  ++vG   vGKS L  +l+++   v ++  t  d  +++  +++    + ++Dt+G  e   e   +++++ +  e  l+++ + ++   e ++   ++
  KKY14332.1  11 LVVVGGGGVGKSCLTIQLIQS-HFVDEYDPTIEDSYRKQCVIDEevALLDVLDTAG-QE---EYSAMREQYMRTGEGFLLVYSITSRqsfE-EIMTFQQ 103
                 689****************97.4577777777777666655444347799******.55...44489999999888666666666444433.4556667 PP

                 HHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  96 eleelleeakkplilvlnk 114
                 ++ ++++++  p+i+v nk
  KKY14332.1 104 QILRVKDKDYFPIIVVGNK 122
                 7777776677778888776 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     3e-06     0.006       2     151 ..      10     160 ..       9     165 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3e-06
                 EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTS.SSEEEEEEEGGGHHHHHHHHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleee.pdvvvnvvdatnlernLyLtl 99 
                 ++++vG   vGk+ l  +l +++  v  +   t+e +  k  + ++ev ++D+  +   ++ys    + ++++ + e + +v ++   +++e  +++  
  KKY14332.1  10 KLVVVGGGGVGKSCLTIQLIQSH-FVDEYD-PTIEDSYRKQCVIDEEVALLDVLDTAGQEEYS---AMREQYMRTGEgFLLVYSITSRQSFEEIMTFQQ 103
                 57899999999999999999875.588886.58888888888899999999985444444444...345677776551556667888899********* PP

                 HHHHTT....SSEEEEEETHHHHHHTT.EEE-HHHHHHHHTS-EEEEBTTTTBTHHH CS
      FeoB_N 100 qllelg....vpvvlalnmideaekkg.ieidlkkLsekLgvpvvktsakkkegiee 151
                 q+l ++     p++++ n++d  ++++  + + ++L++++g+  ++tsak++ ++++
  KKY14332.1 104 QILRVKdkdyFPIIVVGNKCDLESERQvSKQEGESLARSFGCRFIETSAKSRINVDN 160
                 ***99854445899999****76665516778899****************999886 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     5e-06      0.01      51      95 ..     109     160 ..      87     170 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5e-06
  MMR_HSR1_Xtn  51 gnrvYipclyvlNKiDl.....isleeldelare..pnsvviSaekelnlde 95 
                   +++ Y p ++v NK+Dl     +s++e ++lar    + + +Sa++++n+d+
    KKY14332.1 109 KDKDYFPIIVVGNKCDLeserqVSKQEGESLARSfgCRFIETSAKSRINVDN 160
                   5679*************5555566666666666555588999*******996 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.3     0.037        74       1      18 [.      13      30 ..      13      43 .. 0.81
   2 ?    7.2   0.0    0.0019       3.8      93     173 ..      58     132 ..      40     174 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.037
  ATP_bind_1  1 vvGpaGsGKttfvgalse 18
                vvG+ G+GK+ ++ +l++
  KKY14332.1 13 VVGGGGVGKSCLTIQLIQ 30
                89*********9877765 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0019
  ATP_bind_1  93 yllfDtPGQielfthseslakiveeLes.efalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDllkek..l 173
                 + ++Dt GQ e   ++e+         + e+ l v  +   q  ++ ++f ++    l++  +   P +vv nk+Dl +e+  +
  KKY14332.1  58 LDVLDTAGQEEYSAMREQYM------RTgEGFLLVYSITSRQSFEEIMTFQQQ---ILRVKDKDYFPIIVVGNKCDLESERqvS 132
                 55889999999999999988......554666666666666777778888877...778888999************8866543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      610  (0.0340231); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 1442.04
//
Query:       KKY14333.1  [L=207]
Description: putative gmf family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-14   52.3   0.0    6.8e-14   51.7   0.0    1.2  1  Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein


Domain annotation for each model (and alignments):
>> Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   3.8e-18   6.8e-14      20     113 ..     102     196 ..      94     202 .. 0.94

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 3.8e-18
                  EEECTTTEEEEEESS-..HHHHHHHHHHTTT-EEEEEEEEEECCSECCEEEEEEEEE--TTS-HHHHHHHHHHHHHHHHHCTTSEEEEEE-CGGCC CS
  Cofilin_ADF  20 kidddkeeivveeege..tyeelreelpeseprYavydveyehddeskrsklvfIswvPdsapikqkmlyasskdalkkelkgisveieatdldel 113
                  +id++++e+++ +++   ++++l +elpes pr++++++ ++ ++++ + ++v++++ P+++++  +m ya+  + ++++  +++  ie++d+ el
   KKY14333.1 102 SIDPKTQEVRPADTEIysNMQDLEDELPESSPRFVLLSYPMTMPSGRLSVPYVLLYYLPETCSTSLRMSYAGAVELMRSTA-EVNRVIEIHDAAEL 196
                  59999******99776999999**********************************************************9.89977*****9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1371.13
//
Query:       KKY14334.1  [L=176]
Description: putative mitotic spindle checkpoint protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.13   12.4   2.9       0.16   12.1   2.9    1.1  1  DUF2052       Coiled-coil domain containing protein (DUF2052)
       0.48   10.4   9.3      0.084   12.9   5.2    1.8  2  Trypan_PARP   Procyclic acidic repetitive protein (PARP)
       0.61   10.2   4.4       0.77    9.9   4.1    1.3  1  CPSF100_C     Cleavage and polyadenylation factor 2 C-termina
        7.4    7.0   7.8        7.3    7.0   7.8    1.3  1  RNA_pol_Rpc4  RNA polymerase III RPC4


Domain annotation for each model (and alignments):
>> DUF2052  Coiled-coil domain containing protein (DUF2052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   2.9   3.6e-05      0.16      54     126 ..      73     148 ..      52     175 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.6e-05
     DUF2052  54 eeslseiLlrreeeaaaaerleaqqeel..eeeeeeeeeeeeeeeeeeeeeeedekekaeadeedeeeeeek.eek 126
                 e s+   L  + + +  ++ l ++++++  +e+e+e e e+e +++ + ++e d++++++ad+++++e + k ++k
  KKY14334.1  73 ELSFTISLTLKADADRPVSVLDREERKWiaAEAETETETETEPQASAQPDSESDSPSPNKADNDTKSEPNPKsKTK 148
                 4455556666777777778888888888763433444434443333333333444444444333333322221111 PP

>> Trypan_PARP  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.48   2.1e+03      67      74 ..      15      22 ..       3      35 .. 0.49
   2 ?   12.9   5.2   1.9e-05     0.084      72     113 ..     104     145 ..      81     157 .. 0.45

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.48
  Trypan_PARP 67 pepepepe 74
                 pe  p pe
   KKY14334.1 15 PESFPIPE 22
                 11111111 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.9e-05
  Trypan_PARP  72 epepepepetepeeepepepepe.pepepepepepepepepga 113
                  e e+e e etep+ +++p++e + p p+ + + +++ ep+p +
   KKY14334.1 104 EAETETETETEPQASAQPDSESDsPSPN-KADNDTKSEPNPKS 145
                  3333333333333333333332201121.22223333333333 PP

>> CPSF100_C  Cleavage and polyadenylation factor 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.1   0.00017      0.77      48     112 ..     102     165 ..      60     169 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00017
   CPSF100_C  48 eeeeeeeeeeaskkqklaeksekeaseeeseekkeslptldvlpankas.vrsaaqplfvGdlrLa 112
                 ++e+e+e e++ + q  a+ +++++s++ +++++++    ++ p++k++   +a ++l +G+lr++
  KKY14334.1 102 AAEAETETETETEPQASAQPDSESDSPSPNKADNDT--KSEPNPKSKTKiKTTAIRKLEIGELRMQ 165
                 223333333333333333444445555555555555..3445555555522559999******986 PP

>> RNA_pol_Rpc4  RNA polymerase III RPC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.8    0.0016       7.3      27      90 ..     101     163 ..      15     166 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0016
  RNA_pol_Rpc4  27 dkseaesqsaekakaeeeskaekasgaeaeekkskkksskkkkkkkskalklkslpeGviGkLl 90 
                    + eae++++++++++++++  ++s++++ +k++++++s + ++k++++ k + +++  iG+L+
    KKY14334.1 101 IAAEAETETETETEPQASAQPDSESDSPSPNKADNDTKS-EPNPKSKTKIKTTAIRKLEIGELR 163
                   445555555555555555555555565555555555554.334444444555666667777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1137.53
//
Query:       KKY14335.1  [L=793]
Description: putative ring finger [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-08   32.8   4.4    6.1e-08   32.8   4.4    3.0  3  IBR       IBR domain, a half RING-finger domain
  ------ inclusion threshold ------
      0.035   13.9   0.3      0.088   12.6   0.3    1.6  1  DUF4158   Domain of unknown function (DUF4158)


Domain annotation for each model (and alignments):
>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.9         2   1.8e+04      26      32 ..     324     327 ..     315     350 .. 0.41
   2 !    4.6   5.6    0.0043        39      17      62 .]     387     434 ..     369     434 .. 0.75
   3 !   32.8   4.4   6.8e-12   6.1e-08      13      58 ..     453     499 ..     443     503 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 2
         IBR  26 Ceaiiek 32 
                 C    ++
  KKY14335.1 324 CI---KN 327
                 22...22 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0043
         IBR  17 nlkwCprpdCe..aiieksegcksvtCsk..CgfefCfnCkkewHeglsC 62 
                 +l  Cp   Ce  ai+ + e   + +C++  C++  C  C+   H + sC
  KKY14335.1 387 DLEDCP--FCEfkAICVSVEIDREFRCRNpdCSKISCRLCHGLTHIPKSC 434
                 577899..78864555555556778898888**************99999 PP

  == domain 3  score: 32.8 bits;  conditional E-value: 6.8e-12
         IBR  13 esdpnlkwCprpdCeaiieksegcksvtCskCgfefCfnCkkew.He 58 
                  sd  +++Cp+++C+ +i k+ gc+++ C++C+  +C+ C+k   He
  KKY14335.1 453 MSDALIRKCPNSQCKMPIIKEYGCNKMICTNCRNIMCYVCGKGItHE 499
                 345669***********************************987676 PP

>> DUF4158  Domain of unknown function (DUF4158)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   9.8e-06     0.088      82     123 ..     581     622 ..     576     629 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.8e-06
     DUF4158  82 edpsalakyasreqtrrehlaeIrellgyrpfteadlrelee 123
                 ++p+a++++ +  + rr+h+++Ire+  +++++ea+l+++ee
  KKY14335.1 581 PPPRAITQIMRAGHARRRHHERIREHPRFHQWREAHLAAMEE 622
                 46799999999*************************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       921  (0.0513693); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.52
# Mc/sec: 4560.38
//
Query:       KKY14336.1  [L=168]
Description: hypothetical protein UCRPC4_g06791 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1116.64
//
Query:       KKY14337.1  [L=706]
Description: hypothetical protein UCRPC4_g06792 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1054  (0.0587874); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.48
# Mc/sec: 4418.13
//
Query:       KKY14338.1  [L=473]
Description: putative d-amino-acid oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-26   92.9   0.1    1.8e-26   92.1   0.1    1.4  1  Thioredoxin    Thioredoxin
    1.8e-22   80.4   0.0    2.2e-22   80.1   0.0    1.1  1  DAO            FAD dependent oxidoreductase
     0.0024   18.1   0.0     0.0062   16.8   0.0    1.6  1  Thioredoxin_8  Thioredoxin-like
     0.0034   16.8   0.1     0.0072   15.7   0.1    1.5  1  OST3_OST6      OST3 / OST6 family, transporter family
     0.0064   16.4   0.0      0.013   15.4   0.0    1.5  1  AhpC-TSA       AhpC/TSA family
  ------ inclusion threshold ------
       0.01   16.2   0.3      0.031   14.7   0.3    1.8  1  Thioredoxin_2  Thioredoxin-like domain


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.1   5.9e-30   1.8e-26       5     101 ..       9     104 ..       5     106 .. 0.93

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 5.9e-30
                  SSHHHHHHHHTT.TSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHHH CS
  Thioredoxin   5 ltkenFeeevak.ekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaafl 101
                   +k+++e+++ +  ++lv+++++A+wCg+Ck++aP++ +++++++ k  ++k+dvde +d+a++++++++Pt+klfkng++v +++ga++ +++++ +
   KKY14338.1   9 ASKAEWEKALTDaGSELVVLDCFATWCGPCKMIAPKIVDFSNQFE-KAHFYKIDVDEVPDVAQELGIRAMPTFKLFKNGEQVGEIVGANP-KAIETAI 104
                  56899*****9977999****************************.*******************************************9.6666655 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.0   7.3e-26   2.2e-22       7     350 ..     109     452 ..     109     454 .. 0.72

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 7.3e-26
                 TSHHHHHHHHHHHHTT...EEEEESSSSTT....SSGGGSSEEEEESSS.STHHSTHHHHHHHHHHHHHHHHHHHHHSSTTS.EEEEEEEEEESSHHHH CS
         DAO   7 GGiiGlstAyeLarrg...Vtllekgdiag....sgaSgrnsgllhsgl.rylpeaselarlslealeelreleeelgidid.yrrtGllslaadeeel 96 
                 +G++Gl+tA+ L++ +   +t+  k+  +g    + aS  +++  ++   r++p a    ++ ++++ +l +l+++ +++ + + ++++++  +++  +
  KKY14338.1 109 AGVTGLTTALLLSENPrykITVAAKH-MPGdydiQYASPWAGANYMPVSlRDTPAA----QWDRDTFPYLVDLARN-HPESGiHFQKTKIFNRRKDV-Q 200
                 8*************98899*******.99977775444444444444224888855....9*********999987.78877455566666655554.4 PP

                 HHHHHHHHHHHHTTTTEEEEEHHHHHHHSTT....ST.TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEE CS
         DAO  97 ealdkllallleagldaelldaeevrelepa....lp.gllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttpgen 190
                  a ++++a+ll+ ++   +++   v++ + +    lp g+  a  +++  ++++a ++++l +++ a    +l+++  +++  +   ++++ ++t g +
  KKY14338.1 201 SATAAWFADLLSTDP---WWKDT-VLDFKVMnpftLPeGVDSATEFTS-VCLNTAIYLPYLVSRLLATRRVVLKRSIFKHI-LD---AAKI-HHT-GKK 288
                 445589998876665...76554.666555533254468777777777.***************66665555555455655.44...4555.333.775 PP

                 EEEEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEE.TTSEEEEEESSEEETTCSSTSCSHHHHHH CS
         DAO 191 daadavVnaaGawsd.llgllkeldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtpr.kdgrvlvGgtadeesgdddpevdeedide 287
                   ad v+n++G+ ++ l    + +d  + p+rgq + +++ s+   +   i      d ++ ++y++ r ++g+ ++Gg + + +++d  +vd + + +
  KKY14338.1 289 --ADIVINCTGLSARtLG---GVMDENMIPARGQTILVRNESD---WMGSISGS--DDGEDEVTYLMTRaAGGGSILGGCY-QKGNYDG-SVDLNLASR 375
                 ..799********99555...4447788**********77666...33344443..677777888888746677999***8.6666777.********* PP

                 HHHHHHHHSGGG........CGEEEEEEEEEEE.TTSSEEEEEEE.....TEE.EEEEEEECTTTHHHHHHHHHHHHH CS
         DAO 288 llealrklfPql........gdvlrkwaGlrpl.pdglpligetp.....gvk.glylatGhsghGltlapatGklla 350
                 +++++ +++P+l         d++++ +Glrp   +g  +  e       g++  l++++Gh+g G++++ ++ k+++
  KKY14338.1 376 IMKRVLAICPELadgkgpdgLDIVKHNVGLRPVrINGTRIERE-AindtdGTQlQLVHNYGHGGFGYQSSYGCSKVVV 452
                 ***********74555555555999*******52566665555.34677744559******************99886 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.1e-06    0.0062       2      34 ..      24      56 ..      22      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.1e-06
                   SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTT CS
  Thioredoxin_8  2 kvvlLyfgaswcppckaftpklkelyeklkkkk 34
                   ++v+L ++a+wc pck + pk+ +++++++k++
     KKY14338.1 24 ELVVLDCFATWCGPCKMIAPKIVDFSNQFEKAH 56
                   689**************************9643 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   2.4e-06    0.0072      46     107 ..      35      88 ..      31     133 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.4e-06
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkg 107
                 C +C+ ++p++   ++++ k          F k+d+de +dv q+lg++  P + lf+  ++
  KKY14338.1  35 CGPCKMIAPKIVDFSNQFEKA--------HFYKIDVDEVPDVAQELGIRAMPTFKLFKNGEQ 88 
                 888888888888888888888........5***************************98443 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.3e-06     0.013      18      71 ..      16      66 ..       7      81 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.3e-06
                EECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCH CS
    AhpC-TSA 18 vslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspe 71
                + l+d   + vvl ++++ wc +C+  +p++ +  ++f++  +  + + vd++ 
  KKY14338.1 16 KALTDAGSELVVLDCFAT-WCGPCKMIAPKIVDFSNQFEK--AHFYKIDVDEVP 66
                5677886689********.********************5..556666666655 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.3     1e-05     0.031       8     103 ..      26      99 ..      20     104 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1e-05
  Thioredoxin_2   8 vlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtiv.fldgkeivarlpGyvpa 102
                    v+++  +++C+ Ck +  ++ +  + ++        ++++++ ++++  +++             a+++g+r++Pt+  f +g+  v +++G+ p+
     KKY14338.1  26 VVLDCFATWCGPCKMIAPKIVDF-SNQF--------EKAHFYKIDVDEVPDV-------------AQELGIRAMPTFKlFKNGE-QVGEIVGANPK 98 
                    67777799999999999999999.2222........2345777777777776.............6**********88577777.88899999876 PP

  Thioredoxin_2 103 e 103
                    +
     KKY14338.1  99 A 99 
                    5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 2988.63
//
Query:       KKY14339.1  [L=383]
Description: putative extracellular otu-like cysteine [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-07   30.9   0.0    1.2e-06   29.0   0.0    1.9  1  OTU       OTU-like cysteine protease


Domain annotation for each model (and alignments):
>> OTU  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   6.7e-11   1.2e-06       3      86 ..      11     124 ..       9     146 .. 0.66

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 6.7e-11
                 SS-HHHHHHHHCCCSS.S...HCCHHHHHHHHHCHHHHHHTSSHHCCHHHHCCHHH.................................HHHHTTSTT. CS
         OTU   3 DGnCLlravsqqlwgvsd...elrkakvseLreklaeylrehseelelfleeeeeg.................................ylkeiekta. 64 
                  G+CL+++ ++q++g +d   e        +r+  ++y+r+h e++ + ++ +ee                                    +  e    
  KKY14339.1  11 RGHCLFASLADQVYGSHDrhpE--------MRQDIVQYIRKHPEDFFEWIDVQEELeigtgkrstrkkkikdgeepeeedkdiqdhftaLNNRLERMEg 101
                 6*************88873333........666666666666666555555554445555555555666666666666666666655543333333223 PP

                 .HHHHHHHHHHHHHHCTS-EEEE CS
         OTU  65 .awggeleifalahiLrrpIiVl 86 
                  +wg+e+ei a ++ ++  +++ 
  KKY14339.1 102 rEWGDEIEIAAFCQAFDYDVVLF 124
                 49***************999983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1143  (0.0637515); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.35s 00:00:00.98 Elapsed: 00:00:00.51
# Mc/sec: 2263.97
//
Query:       KKY14340.1  [L=160]
Description: putative copi-coated vesicle [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-31  107.2   6.6    8.2e-31  106.8   6.6    1.1  1  COPI_assoc  COPI associated protein
  ------ inclusion threshold ------
       0.16   11.8   0.1        2.1    8.2   0.0    2.2  2  COX14       Cytochrome oxidase c assembly
       0.48   10.8   7.8        1.3    9.4   7.8    1.8  1  Cg6151-P    Uncharacterized conserved protein CG6151-P


Domain annotation for each model (and alignments):
>> COPI_assoc  COPI associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.8   6.6   1.4e-34   8.2e-31       4     120 ..      34     150 ..      31     158 .. 0.92

  Alignments for each domain:
  == domain 1  score: 106.8 bits;  conditional E-value: 1.4e-34
  COPI_assoc   4 frilnlvvgglaillgisqliilfsnflsfilsiYiillgivlillEf..rvpfeiykyfsfmfsylGRGlfyillgllvsyggvlsilialllflvGL 100
                  r++nl vgg+++l+gisq++ +  +f+s+i++iY+il+g+ +++lE+  ++p++i +y+sf+fs+lGRGlfyi++g+++  g vl+i++++++ +vGL
  KKY14340.1  34 ARLVNLAVGGIMVLGGISQFFPI--SFHSIIIGIYVILFGAAVLVLELvpNIPPYIPRYASFLFSFLGRGLFYIFVGSIILEGHVLRIIAGTIVGFVGL 130
                 699****************9887..**********************95567777**********************8888777*************** PP

  COPI_assoc 101 vyillhlvpsieepenlkke 120
                  y +l+++p+ie+p+n++++
  KKY14340.1 131 GYSALEFLPQIEPPANMNDQ 150
                 *****************976 PP

>> COX14  Cytochrome oxidase c assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2      0.06   3.6e+02      25      38 ..       2      15 ..       1      22 [. 0.86
   2 ?    8.2   0.0   0.00036       2.1      18      40 ..     116     138 ..     114     153 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.06
       COX14 25 Tlyaggllvytvys 38
                T+y+ gll+++ y+
  KKY14340.1  2 TVYTVGLLTVSPYD 15
                99999999999887 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00036
       COX14  18 VltLiGvTlyaggllvytvysyg 40 
                 Vl +i++T+++ ++l+y++   +
  KKY14340.1 116 VLRIIAGTIVGFVGLGYSALEFL 138
                 6679*************987665 PP

>> Cg6151-P  Uncharacterized conserved protein CG6151-P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   7.8   0.00021       1.3       9      82 ..      45     112 ..      37     140 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00021
    Cg6151-P   9 cialGianiftlsvvlivfsilalvsgfvvlfiEvPlllricptsskfdefiekfetnwmraalYlvmavvqwl 82 
                 +++ Gi  +f +s+  i+++i+ +++g+ vl++E  l+ +i p++ + ++f  +f   + r+++Y+ ++ +  l
  KKY14340.1  45 MVLGGISQFFPISFHSIIIGIYVILFGAAVLVLE--LVPNIPPYIPRYASFLFSF---LGRGLFYIFVGSII-L 112
                 56779999**************************..3556777778888888777...99999999887776.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.49
# Mc/sec: 988.52
//
Query:       KKY14341.1  [L=218]
Description: putative 60s ribosomal protein l13 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-78  260.9   3.9    7.4e-78  260.5   3.9    1.2  1  Ribosomal_L13e  Ribosomal protein L13e
  ------ inclusion threshold ------
      0.055   14.2   0.1       0.15   12.8   0.1    1.6  1  Fmp27_SW        RNA pol II promoter Fmp27 protein domain


Domain annotation for each model (and alignments):
>> Ribosomal_L13e  Ribosomal protein L13e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.5   3.9   8.2e-82   7.4e-78       1     180 []       8     194 ..       8     194 .. 0.96

  Alignments for each domain:
  == domain 1  score: 260.5 bits;  conditional E-value: 8.2e-82
  Ribosomal_L13e   1 vipnnhfrKdwqrrvktwfdqparkkrRrearqakaakvaprpvekLrPvVrcptvrYntkvraGrGFtleElkaagiskklArtiGIavDhRrk 95 
                     +ip+nhf+Kdwqrrv+++fdq++rk rRr+ar +kaa+vaprpv+kL+PvVrcpt++Yn++vraGrGFtl+Elk+agi++klA+tiGI+vD Rr+
      KKY14341.1   8 QIPHNHFHKDWQRRVRVHFDQAGRKWRRRQARLSKAAAVAPRPVDKLKPVVRCPTIKYNRRVRAGRGFTLQELKEAGIPRKLAPTIGISVDARRQ 102
                     69********************************************************************************************* PP

  Ribosomal_L13e  96 nkseeslkaNveRLkeYkskLilfprkakkpkkgdaskeelkaak....qvkvaavlpikkeakkekaraiteee..k.kfkayrtlrkara 180
                     n s+esl+aNveRLk+Y+s+Lilfprk+++ kk d+skee++a k     ++v +vlpik+++++ ++++i++++  k +++ayr+lr+ar+
      KKY14341.1 103 NLSSESLAANVERLKSYRSRLILFPRKSGQFKKLDSSKEEVAAVKegktVKTVGSVLPIKNATVADAITEISRSDlpKgEENAYRRLRDARS 194
                     *****************************************9988666556778899*****************987469*********985 PP

>> Fmp27_SW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.6e-05      0.15       7      56 ..      12      61 ..       9      68 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.6e-05
    Fmp27_SW  7 ehnsksWirrikaakekqkeeikeirerlygkeelskedkdknekilplp 56
                +h+ k+W rr++ + ++  +++++++ rl ++  +++++ dk + ++  p
  KKY14341.1 12 NHFHKDWQRRVRVHFDQAGRKWRRRQARLSKAAAVAPRPVDKLKPVVRCP 61
                799*************************************9999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.51
# Mc/sec: 1278.43
//
Query:       KKY14342.1  [L=602]
Description: hypothetical protein UCRPC4_g06797 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 3860.32
//
Query:       KKY14343.1  [L=429]
Description: putative gnat family acetyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-06   27.9   0.1    5.7e-06   26.4   0.0    1.8  2  Acetyltransf_9   Acetyltransferase (GNAT) domain
    6.5e-05   23.3   0.0    0.00014   22.2   0.0    1.6  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0019   18.4   0.0     0.0048   17.1   0.0    1.7  1  Acetyltransf_1   Acetyltransferase (GNAT) family
     0.0065   16.4   0.0      0.019   14.9   0.0    1.7  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.018   15.0   0.0      0.046   13.7   0.0    1.7  1  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.6e-09   5.7e-06      71     127 ..     111     175 ..     106     176 .. 0.81
   2 ?   -3.4   0.0       2.6   9.3e+03      13      39 ..     334     363 ..     328     377 .. 0.47

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.6e-09
                     EEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHT.T--......EEEE--.SSHHHHHTTT-EE CS
  Acetyltransf_9  71 lkaagvtgVavapehrgrgvlskLlaraleemree.gqp......lsllfP.ssipiYrrfGyei 127
                     + a gv++V   pe+rgrg++ ++++++ ++m++  +qp      +s+l+  +  ++Y  fG+++
      KKY14343.1 111 VIAHGVGSVFCRPEYRGRGYAGRMMKELAQKMDQGwQQPsghppsFSILYSdIGQKFYNDFGWKP 175
                     55789***************************98633323333348888888888********85 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.6
                     HHHHHHHHTT----H.....HHHHHHHHHH CS
  Acetyltransf_9  13 vlellkyaFqdeespl..e.eireyfrkll 39 
                     + +ll +a  + e+      ei+   + ++
      KKY14343.1 334 ITSLLLRAQLEAERSGmkAfEIWSPSKITI 363
                     444444444444444333334444444444 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0     4e-08   0.00014      29      75 ..     114     174 ..      83     175 .. 0.60

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 4e-08
                     E....EEE-GGGTTSSHHHHHHHH..TT..SEEE.........EEEEEETHH....HHHHHHHHTTEE CS
  Acetyltransf_7  29 r....laVdpeyrgkGiGraLlea..ae..kgii.........leqlelnae....kaikfYeklGFe 75 
                     +    ++ +peyrg+G++ ++++   ++  +g +                        +kfY  +G++
      KKY14343.1 114 HgvgsVFCRPEYRGRGYAGRMMKElaQKmdQGWQqpsghppsfS-------IlysdIGQKFYNDFGWK 174
                     123359****************9534224544223333333321.......022226688***99987 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.3e-06    0.0048      62      90 ..     115     143 ..      61     147 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.3e-06
                     EEEEEEESGGGTTSSHHHHHHHHHHHHHH CS
  Acetyltransf_1  62 yieslaVspeyrgkGlGsaLlealeerar 90 
                      + s++ +peyrg+G++ +++++l++++ 
      KKY14343.1 115 GVGSVFCRPEYRGRGYAGRMMKELAQKMD 143
                     45599********************9775 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.2e-06     0.019      54     109 ..     116     176 ..     104     187 .. 0.82
   2 ?   -3.2   0.0       2.2   7.7e+03      36      55 ..     231     252 ..     220     261 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.2e-06
  Acetyltransf_10  54 isllfVdpeyrgqGigkaLleaveeeaek...dgikl..eltvnaspyavpfYeklGFkav 109
                      ++ +f +peyrg+G++ ++++++ +++++   +++++  ++++  s+  ++fY  +G+k+ 
       KKY14343.1 116 VGSVFCRPEYRGRGYAGRMMKELAQKMDQgwqQPSGHppSFSILYSDIGQKFYNDFGWKPY 176
                      677999*****************9998642224444479999999************9986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.2
  Acetyltransf_10  36 aeeggkiv.Gviel.rdgshis 55 
                      ae+++ ++  +i++  d +his
       KKY14343.1 231 AEKSNDPAkTFIAIrPDYEHIS 252
                      4444444445566655555655 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.3e-05     0.046      24      52 ..     116     144 ..      97     152 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.3e-05
                 EEEEEE-GGG-SSSHHHHHHHHHHHHHHH CS
        FR47  24 lgalqvlpehrrrGlgsrlvkalakeiae 52 
                 +g++  +pe r+rG+++r+ k+la+++ +
  KKY14343.1 116 VGSVFCRPEYRGRGYAGRMMKELAQKMDQ 144
                 578999*******************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.50
# Mc/sec: 2600.94
//
Query:       KKY14344.1  [L=664]
Description: putative conserved leucine-rich repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-34  115.8  59.7    3.9e-08   32.9  10.4    9.0 10  LRR_8     Leucine rich repeat
    1.2e-28   98.7  63.7    1.8e-06   28.1   4.1   10.8 15  LRR_4     Leucine Rich repeats (2 copies)
      3e-10   39.9  17.8      4e-05   23.2   1.1    5.0  5  LRR_9     Leucine-rich repeat
    3.2e-07   30.0  40.3          4    8.4   0.2   12.9 13  LRR_1     Leucine Rich Repeat
    0.00015   21.5  50.3       0.11   12.6   0.1   13.6 16  LRR_6     Leucine Rich repeat


Domain annotation for each model (and alignments):
>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.4   8.5e+03       3      21 ..     105     123 ..     105     126 .. 0.78
   2 !   26.6   7.8     1e-09   3.7e-06       2      61 .]     144     202 ..     143     202 .. 0.97
   3 !   32.9  10.4   1.1e-11   3.9e-08       2      61 .]     167     226 ..     166     226 .. 0.98
   4 !   27.2   5.1   6.8e-10   2.4e-06       2      61 .]     215     272 ..     214     272 .. 0.94
   5 !   27.6   2.7   4.9e-10   1.8e-06       3      61 .]     262     320 ..     261     320 .. 0.94
   6 !   28.2   3.0   3.2e-10   1.1e-06       3      61 .]     332     388 ..     330     388 .. 0.93
   7 !   17.4   0.1   7.9e-07    0.0028       6      61 .]     447     503 ..     446     503 .. 0.92
   8 !   19.3   2.9     2e-07   0.00071       8      58 ..     473     524 ..     468     527 .. 0.94
   9 !    7.4   0.9     0.001       3.8       2      60 ..     516     575 ..     515     576 .. 0.85
  10 !    8.1   2.1   0.00061       2.2      23      60 ..     583     620 ..     564     621 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.4
                 -SEEE-TTS--SEE-TTSS CS
       LRR_8   3 LtsLdLsnNrltslddeaF 21 
                 Lt+L+  +N + +++d+ F
  KKY14344.1 105 LTKLIAADNEIIEIRDDGF 123
                 6778888899999999888 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 1e-09
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +L++LdL+ N+l++l+ +  + l++L +L+L nN+lt    + +++Lp L+ L+L +N L
  KKY14344.1 144 GLEILDLHGNKLQGLPVGIRR-LQRLHSLNLANNSLTNTALDIIVQLPELKDLNLGSNLL 202
                 599***************988.************************************87 PP

  == domain 3  score: 32.9 bits;  conditional E-value: 1.1e-11
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +L+sL+L nN+lt+   +   +l+ Lk L+L++Nll+    + +s+L +L+sL+L+gNr+
  KKY14344.1 167 RLHSLNLANNSLTNTALDIIVQLPELKDLNLGSNLLEGSITEDLSSLIHLQSLNLRGNRI 226
                 8*************************************99******************98 PP

  == domain 4  score: 27.2 bits;  conditional E-value: 6.8e-10
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +L+sL+L+ Nr+t+l+ +  + ls+L+ Ld s+N+l++l   ++ gL  L  L++s N+L
  KKY14344.1 215 HLQSLNLRGNRITDLPESIGR-LSQLRKLDASSNQLQSLQMASILGL-PLSDLNVSKNKL 272
                 8**************998888.*************************.699*******97 PP

  == domain 5  score: 27.6 bits;  conditional E-value: 4.9e-10
                 -SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   3 LtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 L+ L++s+N+l +   e   ++ +L +Ld+s+N+l  +s g+   LpsL+sL+ sgNrL
  KKY14344.1 262 LSDLNVSKNKLGGPFLEGSVSMLHLATLDISHNQLAAISTGTSLELPSLQSLHASGNRL 320
                 678999999999999999999************************************98 PP

  == domain 6  score: 28.2 bits;  conditional E-value: 3.2e-10
                 -SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   3 LtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 L +L+ s N+lt+ ++   + l+nL++LdLs+N+++ ++  a +  + L+sL+L+gN+L
  KKY14344.1 332 LLTLSFSENSLTEFPPNLAS-LPNLRTLDLSRNNINKVD-AAVALIEPLTSLHLEGNPL 388
                 66888899**********99.*****************6.9****************97 PP

  == domain 7  score: 17.4 bits;  conditional E-value: 7.9e-07
                 EE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--..S-.EEE--SS-- CS
       LRR_8   6 LdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLp..sLrsLdLsgNrL 61 
                 Ld+s+ + t+ld ++  + ++ k+  L +N+ltt+ p+++  L+  sLr+Ld+s+N L
  KKY14344.1 447 LDISSKSMTELDMDTVPDGPAIKEARLQRNRLTTI-PESLLRLSatSLRMLDMSNNTL 503
                 999********************************.89999995338*********76 PP

  == domain 8  score: 19.3 bits;  conditional E-value: 2e-07
                 -TTS--SEE-TTSSTT.-TT--EEE--SS---GGGGGGGTT--S-.EEE--S CS
       LRR_8   8 LsnNrltslddeaFkg.lsnLkvLdLsnNllttlspgafsgLpsLrsLdLsg 58 
                 L++Nrlt ++ +  +   ++L++Ld+snN+l+     +   Lp L+sL Ls+
  KKY14344.1 473 LQRNRLTTIPESLLRLsATSLRMLDMSNNTLQKTYLTTAITLPLLTSLKLSS 524
                 99************97799*******************************98 PP

  == domain 9  score: 7.4 bits;  conditional E-value: 0.001
                 T-SEEE-TTS--SEE-TTSSTT.-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkg.lsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNr 60 
                  LtsL Ls+ + t+l++   +   ++L  Ld+s N+l+   p+  s  p+L  ++  +N+
  KKY14344.1 516 LLTSLKLSSANVTALSPLLTYLdAPKLSDLDISVNRLSGEFPRLRSYYPKLLTINAADNQ 575
                 699*************98766559*************99878888888888888888887 PP

  == domain 10  score: 8.1 bits;  conditional E-value: 0.00061
                 T-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS- CS
       LRR_8  23 glsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNr 60 
                 ++ +L + +L nN l+ l+p   s  + L++L ++gN 
  KKY14344.1 583 NVAGLSSVNLQNNALSALDPMLGSLSRDLKMLEVRGNL 620
                 56678899999999999999999999999999999996 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1     4e+03       3      18 ..     105     120 ..     104     125 .. 0.81
   2 !   20.6   2.6   1.2e-07   0.00044       3      37 ..     145     179 ..     144     186 .. 0.84
   3 !   14.8   7.5     8e-06     0.029       1      39 [.     166     206 ..     166     214 .. 0.76
   4 !   20.7   2.8   1.2e-07   0.00041       1      41 [.     190     231 ..     190     235 .. 0.89
   5 !   25.4   1.6   3.8e-09   1.3e-05       2      39 ..     215     252 ..     214     262 .. 0.89
   6 !   10.6   0.6   0.00018      0.63       2      33 ..     238     270 ..     237     282 .. 0.79
   7 !   18.8   0.1   4.4e-07    0.0016       3      43 ..     286     327 ..     284     328 .. 0.86
   8 !   28.1   4.1   5.1e-10   1.8e-06       1      39 [.     330     368 ..     330     374 .. 0.90
   9 !   20.3   1.3   1.5e-07   0.00054       1      36 [.     353     388 ..     353     392 .. 0.88
  10 ?   -3.4   0.0       4.2   1.5e+04      23      30 ..     452     459 ..     446     461 .. 0.53
  11 !   14.0   0.4   1.5e-05     0.053       7      36 ..     472     503 ..     466     510 .. 0.80
  12 !    9.1   0.7   0.00051       1.8       3      36 ..     517     552 ..     515     561 .. 0.79
  13 !    6.3   0.6    0.0038        14       1      39 [.     540     579 ..     540     583 .. 0.81
  14 !    8.6   1.8    0.0007       2.5       1      41 [.     564     602 ..     564     608 .. 0.89
  15 !    7.1   0.3    0.0021       7.4       3      33 ..     587     619 ..     585     622 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
                 --EEE--SS---E-S- CS
       LRR_4   3 LevLdLsnNqltdipl 18 
                 L++L  ++N + +i  
  KKY14344.1 105 LTKLIAADNEIIEIRD 120
                 8999999999988865 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.2e-07
                 --EEE--SS---E-S-.HHH-TT--EEE-.-S---- CS
       LRR_4   3 LevLdLsnNqltdipl.leklpnLkeLdLsgNnlit 37 
                 Le+LdL++N+l+ +p  ++ l  L++L+L +N  +t
  KKY14344.1 145 LEILDLHGNKLQGLPVgIRRLQRLHSLNLANN-SLT 179
                 9***************9556*********555.554 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 8e-06
                 SS--EEE--SS---E-S-..HHH-TT--EEE-.-S---.--G CS
       LRR_4   1 pnLevLdLsnNqltdipl..leklpnLkeLdLsgNnli.tdl 39 
                 ++L +L+L+nN lt   l  + +lp Lk L+L g nl+ +++
  KKY14344.1 166 QRLHSLNLANNSLTNTALdiIVQLPELKDLNL-GSNLLeGSI 206
                 5899**********644454449*********.655886555 PP

  == domain 4  score: 20.7 bits;  conditional E-value: 1.2e-07
                 SS--EEE--SS---.E-S-.HHH-TT--EEE-.-S-----GGG CS
       LRR_4   1 pnLevLdLsnNqlt.dipl.leklpnLkeLdLsgNnlitdlde 41 
                 p L+ L+L++N l  +i   l++l +L++L+L gN +itdl+e
  KKY14344.1 190 PELKDLNLGSNLLEgSITEdLSSLIHLQSLNLRGN-RITDLPE 231
                 689*********99999998889*********778.9999865 PP

  == domain 5  score: 25.4 bits;  conditional E-value: 3.8e-09
                 S--EEE--SS---E-S-HHH.-TT--EEE-.-S-----G CS
       LRR_4   2 nLevLdLsnNqltdipllek.lpnLkeLdLsgNnlitdl 39 
                 +L++L+L++N++td+p   + l +L++Ld s+N ++++l
  KKY14344.1 215 HLQSLNLRGNRITDLPESIGrLSQLRKLDASSN-QLQSL 252
                 79***************7777*********998.88887 PP

  == domain 6  score: 10.6 bits;  conditional E-value: 0.00018
                 S--EEE--SS---E-S-HHH-TT..--EEE-.-S CS
       LRR_4   2 nLevLdLsnNqltdiplleklpn..LkeLdLsgN 33 
                 +L++Ld s+Nql++++  + +    L  L++s N
  KKY14344.1 238 QLRKLDASSNQLQSLQMAS-ILGlpLSDLNVSKN 270
                 7*************99955.44445788888777 PP

  == domain 7  score: 18.8 bits;  conditional E-value: 4.4e-07
                 --EEE--SS---E-S-...HHH-TT--EEE-.-S-----GGGGX CS
       LRR_4   3 LevLdLsnNqltdipl...leklpnLkeLdLsgNnlitdldeLk 43 
                 L +Ld+s+Nql  i+    le lp+L++L+ sgN ++  +++L+
  KKY14344.1 286 LATLDISHNQLAAISTgtsLE-LPSLQSLHASGN-RLVAVPDLS 327
                 669*************99888.************.665777775 PP

  == domain 8  score: 28.1 bits;  conditional E-value: 5.1e-10
                 SS--EEE--SS---E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4   1 pnLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdl 39 
                 ++L +L++s N lt++p+ l++lpnL++LdLs+N +i+++
  KKY14344.1 330 TKLLTLSFSENSLTEFPPnLASLPNLRTLDLSRN-NINKV 368
                 6899***************99**********999.66565 PP

  == domain 9  score: 20.3 bits;  conditional E-value: 1.5e-07
                 SS--EEE--SS---E-S-HHH-TT.--EEE-.-S--- CS
       LRR_4   1 pnLevLdLsnNqltdiplleklpn.LkeLdLsgNnli 36 
                 pnL++LdLs N++ +++    l   L++L+L gN ++
  KKY14344.1 353 PNLRTLDLSRNNINKVDAAVALIEpLTSLHLEGN-PL 388
                 8*****************8877777******999.44 PP

  == domain 10  score: -3.4 bits;  conditional E-value: 4.2
                 TT--EEE- CS
       LRR_4  23 pnLkeLdL 30 
                 ++++eLd+
  KKY14344.1 452 KSMTELDM 459
                 45556655 PP

  == domain 11  score: 14.0 bits;  conditional E-value: 1.5e-05
                 E--SS---E-S-..HH.H-TT--EEE-.-S--- CS
       LRR_4   7 dLsnNqltdipl..le.klpnLkeLdLsgNnli 36 
                  L+ N+lt+ip   l+ + ++L+ Ld+s+N  +
  KKY14344.1 472 RLQRNRLTTIPEslLRlSATSLRMLDMSNN-TL 503
                 7999********985556999******777.54 PP

  == domain 12  score: 9.1 bits;  conditional E-value: 0.00051
                 --EEE--SS---E-S-.HH..H-TT--EEE-.-S--- CS
       LRR_4   3 LevLdLsnNqltdipl.le..klpnLkeLdLsgNnli 36 
                 L++L Ls+ ++t +++ l     p+L  Ld+s N ++
  KKY14344.1 517 LTSLKLSSANVTALSPlLTylDAPKLSDLDISVN-RL 552
                 9***************633555899******777.43 PP

  == domain 13  score: 6.3 bits;  conditional E-value: 0.0038
                 SS--EEE--SS---.E-S-HHH.-TT--EEE-.-S-----G CS
       LRR_4   1 pnLevLdLsnNqlt.dipllek.lpnLkeLdLsgNnlitdl 39 
                 p+L  Ld+s N+l+ ++p l++  p+L +++  +N + ++l
  KKY14344.1 540 PKLSDLDISVNRLSgEFPRLRSyYPKLLTINAADN-QFSNL 579
                 68889****99***887779988********9788.54444 PP

  == domain 14  score: 8.6 bits;  conditional E-value: 0.0007
                 SS--EEE--SS---E-S-HHH-TT--EEE-.-S-----GGG CS
       LRR_4   1 pnLevLdLsnNqltdiplleklpnLkeLdLsgNnlitdlde 41 
                 p+L +++ ++Nq + +p  +    L +++L +Nn ++ ld+
  KKY14344.1 564 PKLLTINAADNQFSNLPYSN-VAGLSSVNL-QNNALSALDP 602
                 78999*************99.9********.8888888875 PP

  == domain 15  score: 7.1 bits;  conditional E-value: 0.0021
                 --EEE--SS---E-S-.HHH-TT.--EEE-.-S CS
       LRR_4   3 LevLdLsnNqltdipl.leklpn.LkeLdLsgN 33 
                 L +++L+nN l+ +++ l++l   Lk L + gN
  KKY14344.1 587 LSSVNLQNNALSALDPmLGSLSRdLKMLEVRGN 619
                 66789************9996655999998776 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   1.1   1.1e-08     4e-05      43     145 ..     141     242 ..     116     256 .. 0.82
   2 !   12.7   0.0   1.9e-05     0.068      57     116 ..     277     336 ..     259     346 .. 0.83
   3 !    9.3   0.3    0.0002      0.73      65     129 ..     331     392 ..     329     420 .. 0.77
   4 !    5.4   1.3    0.0033        12      59     128 ..     461     530 ..     446     551 .. 0.64
   5 ?   -2.1   0.0      0.65   2.3e+03      46      93 ..     568     614 ..     563     621 .. 0.64

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.1e-08
       LRR_9  43 qfdtidlsdndirkldgfPl....lkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsllknpvtnkkeyrlyviy 137
                 qf  +++ d   +kl+g+P     l+rl++l l+nn ++++a ++   lP+l+ l l +n l+   + + l sl +l++l l  n +t+ +e     i 
  KKY14344.1 141 QFGGLEILDLHGNKLQGLPVgirrLQRLHSLNLANNSLTNTALDIIVQLPELKDLNLGSNLLEGSIT-EDLSSLIHLQSLNLRGNRITDLPES----IG 234
                 78888888888888888886555599***********************************998777.8999999999999999999987653....45 PP

       LRR_9 138 klkqlrll 145
                 +l qlr l
  KKY14344.1 235 RLSQLRKL 242
                 55555555 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.9e-05
       LRR_9  57 ldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkkle 116
                 l+g   +  l tl ++ n++  i+ g +  lP+l++l  ++n+l  + dl P ++l  l+
  KKY14344.1 277 LEGSVSMLHLATLDISHNQLAAISTGTSLELPSLQSLHASGNRLVAVPDLSPCTKLLTLS 336
                 56666677899**************************************99998776654 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0002
       LRR_9  65 rlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsllknpvtnkk 129
                 +l tl++++n ++   ++l+ +lPnl++l l+ n+++++     +a ++ l++l l  np+ ++k
  KKY14344.1 331 KLLTLSFSENSLTEFPPNLA-SLPNLRTLDLSRNNINKVDA--AVALIEPLTSLHLEGNPLRERK 392
                 57788999999999999997.68999999999999988765..5666777888888888876554 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.0033
       LRR_9  59 gfPllkrlktlllnnnrivriaeglee.vlPnleelvltnnelqeladldPlaslkklellsllknpvtnk 128
                  +P    +k   l+ nr++ i e l + +  +l+ l ++nn+lq+   l   ++l+ l++l l ++ vt+ 
  KKY14344.1 461 TVPDGPAIKEARLQRNRLTTIPESLLRlSATSLRMLDMSNNTLQKT-YLTTAITLPLLTSLKLSSANVTAL 530
                 5666666777777777777777776541456777777777777764.356666777777777766666654 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 0.65
       LRR_9  46 tidlsdndirkldgfPllkrlktlllnnnrivriaegleevlPnleel 93 
                 ti+ +dn+  +l  +  +  l ++ l+nn +  + + l+     l+ l
  KKY14344.1 568 TINAADNQFSNLP-YSNVAGLSSVNLQNNALSALDPMLGSLSRDLKML 614
                 6777777665442.3335567777788887777777776666555555 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.019        67       2      16 ..     145     159 ..     144     163 .. 0.87
   2 ?    4.7   0.3     0.018        65       1      13 [.     167     179 ..     167     189 .. 0.83
   3 ?    2.6   0.4     0.089   3.2e+02       2      22 ..     192     212 ..     191     213 .. 0.80
   4 !    8.4   0.2    0.0011         4       1      16 [.     215     230 ..     215     236 .. 0.82
   5 ?    4.9   0.0     0.015        55       1      23 []     238     260 ..     238     260 .. 0.87
   6 ?   -2.3   0.0       3.6   1.3e+04       5      13 ..     265     273 ..     262     278 .. 0.77
   7 !    7.1   0.0    0.0028        10       2      23 .]     286     313 ..     285     328 .. 0.91
   8 ?    1.1   0.1      0.28     1e+03       1      18 [.     331     348 ..     331     351 .. 0.86
   9 !    8.2   0.0    0.0013       4.6       1      12 [.     354     365 ..     354     373 .. 0.87
  10 ?    3.5   0.0     0.043   1.5e+02       2      12 ..     378     388 ..     377     406 .. 0.88
  11 ?    2.4   0.1     0.098   3.5e+02       1      12 [.     492     503 ..     492     523 .. 0.81
  12 ?    0.8   0.1      0.33   1.2e+03       1      18 [.     541     558 ..     541     559 .. 0.81
  13 ?   -1.8   0.1       2.5   8.8e+03       2      13 ..     587     604 ..     586     614 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.019
       LRR_1   2 LrhLdLsnnpllglp 16 
                 L+ LdL +n l glp
  KKY14344.1 145 LEILDLHGNKLQGLP 159
                 99*********7776 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.018
       LRR_1   1 nLrhLdLsnnpll 13 
                 +L +L+L nn+l+
  KKY14344.1 167 RLHSLNLANNSLT 179
                 699********95 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.089
       LRR_1   2 LrhLdLsnnpllglppnsfqn 22 
                 L+ L+L++n l+g + +++++
  KKY14344.1 192 LKDLNLGSNLLEGSITEDLSS 212
                 899********8877666665 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.0011
       LRR_1   1 nLrhLdLsnnpllglp 16 
                 +L++L+L++n++++lp
  KKY14344.1 215 HLQSLNLRGNRITDLP 230
                 69**********7665 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.015
       LRR_1   1 nLrhLdLsnnpllglppnsfqnL 23 
                 +Lr+Ld s+n+l +l+ +s+ +L
  KKY14344.1 238 QLRKLDASSNQLQSLQMASILGL 260
                 59**********99998888765 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 3.6
       LRR_1   5 LdLsnnpll 13 
                 L++s n l+
  KKY14344.1 265 LNVSKNKLG 273
                 999***994 PP

  == domain 7  score: 7.1 bits;  conditional E-value: 0.0028
       LRR_1   2 LrhLdLsnnpl......lglppnsfqnL 23 
                 L +Ld+s+n+l      ++l+ +s+q+L
  KKY14344.1 286 LATLDISHNQLaaistgTSLELPSLQSL 313
                 679*******999999999999999876 PP

  == domain 8  score: 1.1 bits;  conditional E-value: 0.28
       LRR_1   1 nLrhLdLsnnpllglppn 18 
                 +L +L  s n+l+ +ppn
  KKY14344.1 331 KLLTLSFSENSLTEFPPN 348
                 6779999*****999998 PP

  == domain 9  score: 8.2 bits;  conditional E-value: 0.0013
       LRR_1   1 nLrhLdLsnnpl 12 
                 nLr+LdLs+n++
  KKY14344.1 354 NLRTLDLSRNNI 365
                 8*********97 PP

  == domain 10  score: 3.5 bits;  conditional E-value: 0.043
       LRR_1   2 LrhLdLsnnpl 12 
                 L++L+L++npl
  KKY14344.1 378 LTSLHLEGNPL 388
                 89********9 PP

  == domain 11  score: 2.4 bits;  conditional E-value: 0.098
       LRR_1   1 nLrhLdLsnnpl 12 
                 +Lr Ld+snn l
  KKY14344.1 492 SLRMLDMSNNTL 503
                 6999******88 PP

  == domain 12  score: 0.8 bits;  conditional E-value: 0.33
       LRR_1   1 nLrhLdLsnnpllglppn 18 
                 +L  Ld+s n+l+g  p+
  KKY14344.1 541 KLSDLDISVNRLSGEFPR 558
                 57779******9887765 PP

  == domain 13  score: -1.8 bits;  conditional E-value: 2.5
       LRR_1   2 LrhLdLsnnpl......l 13 
                 L + +L nn l      l
  KKY14344.1 587 LSSVNLQNNALsaldpmL 604
                 557788888774444443 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.27   9.8e+02       5      16 ..     145     156 ..     144     157 .. 0.89
   2 ?    3.6   0.6     0.023        82       3      18 ..     166     181 ..     164     184 .. 0.86
   3 ?    1.0   0.2      0.17     6e+02       5      16 ..     192     203 ..     189     206 .. 0.85
   4 !   12.1   0.5   4.3e-05      0.16       3      17 ..     214     228 ..     212     229 .. 0.92
   5 ?   -1.2   0.0       0.8   2.9e+03       4      16 ..     238     250 ..     236     251 .. 0.84
   6 ?    1.7   0.0     0.097   3.5e+02       6      17 ..     263     274 ..     261     275 .. 0.85
   7 !    7.8   0.1    0.0011       3.8       3      15 ..     284     296 ..     282     298 .. 0.88
   8 ?    1.3   0.1      0.13   4.8e+02       2      16 ..     329     343 ..     328     343 .. 0.89
   9 !   12.6   0.1   3.2e-05      0.11       3      17 ..     353     367 ..     351     371 .. 0.85
  10 ?    1.3   0.0      0.13   4.5e+02       5      15 ..     378     388 ..     376     389 .. 0.89
  11 ?   -3.4   0.1       4.3   1.5e+04      11      18 ..     422     430 ..     421     430 .. 0.75
  12 ?   -3.1   0.0       3.3   1.2e+04       2      10 ..     451     459 ..     450     459 .. 0.81
  13 ?    2.0   0.1     0.078   2.8e+02       3      16 ..     491     504 ..     489     506 .. 0.86
  14 ?    0.1   0.1      0.31   1.1e+03       4      16 ..     516     528 ..     513     529 .. 0.83
  15 ?    2.6   0.0      0.05   1.8e+02       4      18 ..     541     555 ..     539     555 .. 0.87
  16 ?   -3.6   0.2       4.8   1.7e+04       6      15 ..     588     597 ..     587     598 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.27
       LRR_6   5 LteLdLsgNdIg 16 
                 L+ LdL gN+++
  KKY14344.1 145 LEILDLHGNKLQ 156
                 899******987 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.023
       LRR_6   3 thLteLdLsgNdIgDe 18 
                 + L +L+L+ N +++ 
  KKY14344.1 166 QRLHSLNLANNSLTNT 181
                 6799********9985 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.17
       LRR_6   5 LteLdLsgNdIg 16 
                 L+ L+L +N + 
  KKY14344.1 192 LKDLNLGSNLLE 203
                 899******876 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 4.3e-05
       LRR_6   3 thLteLdLsgNdIgD 17 
                  hL++L+L+gN I+D
  KKY14344.1 214 IHLQSLNLRGNRITD 228
                 6*************9 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 0.8
       LRR_6   4 hLteLdLsgNdIg 16 
                  L++Ld s+N+++
  KKY14344.1 238 QLRKLDASSNQLQ 250
                 6999**99**986 PP

  == domain 6  score: 1.7 bits;  conditional E-value: 0.097
       LRR_6   6 teLdLsgNdIgD 17 
                   L++s N++g+
  KKY14344.1 263 SDLNVSKNKLGG 274
                 57********97 PP

  == domain 7  score: 7.8 bits;  conditional E-value: 0.0011
       LRR_6   3 thLteLdLsgNdI 15 
                  hL +Ld+s+N++
  KKY14344.1 284 LHLATLDISHNQL 296
                 59*********97 PP

  == domain 8  score: 1.3 bits;  conditional E-value: 0.13
       LRR_6   2 nthLteLdLsgNdIg 16 
                 +t+L +L+ s N ++
  KKY14344.1 329 CTKLLTLSFSENSLT 343
                 89*********9875 PP

  == domain 9  score: 12.6 bits;  conditional E-value: 3.2e-05
       LRR_6   3 thLteLdLsgNdIgD 17 
                 ++L++LdLs N+I+ 
  KKY14344.1 353 PNLRTLDLSRNNINK 367
                 89***********86 PP

  == domain 10  score: 1.3 bits;  conditional E-value: 0.13
       LRR_6   5 LteLdLsgNdI 15 
                 Lt+L+L gN +
  KKY14344.1 378 LTSLHLEGNPL 388
                 9********76 PP

  == domain 11  score: -3.4 bits;  conditional E-value: 4.3
       LRR_6  11 sgNd.IgDe 18 
                  gN+ Ig+e
  KKY14344.1 422 GGNNvIGGE 430
                 578879987 PP

  == domain 12  score: -3.1 bits;  conditional E-value: 3.3
       LRR_6   2 nthLteLdL 10 
                 + ++teLd+
  KKY14344.1 451 SKSMTELDM 459
                 6789***96 PP

  == domain 13  score: 2.0 bits;  conditional E-value: 0.078
       LRR_6   3 thLteLdLsgNdIg 16 
                 t+L+ Ld+s N ++
  KKY14344.1 491 TSLRMLDMSNNTLQ 504
                 79999******986 PP

  == domain 14  score: 0.1 bits;  conditional E-value: 0.31
       LRR_6   4 hLteLdLsgNdIg 16 
                  Lt+L Ls+ +++
  KKY14344.1 516 LLTSLKLSSANVT 528
                 59******98876 PP

  == domain 15  score: 2.6 bits;  conditional E-value: 0.05
       LRR_6   4 hLteLdLsgNdIgDe 18 
                 +L  Ld+s N +++e
  KKY14344.1 541 KLSDLDISVNRLSGE 555
                 7889*******9986 PP

  == domain 16  score: -3.6 bits;  conditional E-value: 4.8
       LRR_6   6 teLdLsgNdI 15 
                  +++L+ N +
  KKY14344.1 588 SSVNLQNNAL 597
                 6899999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.49
# Mc/sec: 4057.38
//
Query:       KKY14345.1  [L=1062]
Description: putative importin beta-5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-10   39.3   0.0    4.6e-09   36.1   0.0    2.9  3  IBN_N     Importin-beta N-terminal domain
    6.6e-07   29.5   0.0      0.022   14.8   0.0    5.0  6  Xpo1      Exportin 1-like protein
  ------ inclusion threshold ------
      0.035   14.4   0.2          3    8.3   0.1    4.1  3  HEAT      HEAT repeat
      0.074   12.8   0.0       0.81    9.4   0.0    2.8  2  RIX1      rRNA processing/ribosome biogenesis
       0.11   11.0   0.0        0.2   10.1   0.0    1.4  1  CAS_CSE1  CAS/CSE protein, C-terminus
        0.2   11.0   0.2       0.73    9.2   0.0    2.1  2  PI3Ka     Phosphoinositide 3-kinase family, accessory domain 
        1.2    9.2   3.7        5.2    7.2   0.0    3.9  5  Arm       Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.14   3.7e+02      17      39 ..       4      27 ..       3      29 .. 0.80
   2 !   36.1   0.0   1.8e-12   4.6e-09       1      70 [.      23      97 ..      23     101 .. 0.93
   3 ?   -2.9   0.0       2.6   6.7e+03      12      29 ..     133     150 ..     132     156 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.14
                HHHHHHHCTTSH.HHHHHHHHHHH CS
       IBN_N 17 allqilansese.levRqlAalyL 39
                 +l++l+n++s+ +++R +A l+L
  KKY14345.1  4 EVLHLLQNTQSTdESTRKAAELQL 27
                6899****665548******9988 PP

  == domain 2  score: 36.1 bits;  conditional E-value: 1.8e-12
                HHHHHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHC.....GSXHHHHHHHHHHHHH CS
       IBN_N  1 AekqLkqlekqpgflsallqilanseselevRqlAalyLknlitkhWsdeeekq.....slpseekeqIrnnlln 70
                Ae qL q   +p f +all ++ +++   ++Rq+A l+Lk ++ + Ws++ e +      l++e k+qIr  +l 
  KKY14345.1 23 AELQLLQSYANPSFPLALLALAIHTDVAVYLRQSAMLILKTYVVSTWSPKFEEEfkgtvFLSDECKAQIRRDILS 97
                899*********************************************777777789999***********9997 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.6
                 TCHHHHHHHHHHCTTSHH CS
       IBN_N  12 pgflsallqilansesel 29 
                 p+ l++ll+i+++   ++
  KKY14345.1 133 PELLPTLLHIISSNGADE 150
                 677899*****9965554 PP

>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   8.4e-06     0.022       3     108 ..     111     226 ..     109     242 .. 0.76
   2 ?   -2.9   0.0       2.5   6.5e+03      89     115 ..     360     386 ..     352     415 .. 0.70
   3 ?   -2.8   0.0       2.3   5.8e+03      99     125 ..     416     442 ..     372     448 .. 0.76
   4 !    5.4   0.0    0.0069        18      94     145 ..     534     587 ..     517     590 .. 0.79
   5 ?    1.5   0.0      0.11   2.8e+02      84     136 ..     617     669 ..     588     695 .. 0.73
   6 ?   -0.3   0.0      0.38   9.8e+02      43      62 ..     935     954 ..     924     966 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.4e-06
                 HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCT...HHHHHHHHHHHHHHHHHHHT..........SHTTTSCHHHHHHHHHHHHHHHHHHHHHHHH CS
        Xpo1   3 flrnklaealaelflqeypnnWpsffddllsllsss..psglelllriLkvlpeEiad..........fsrskleqerrndlkdllrsnvqkilelllq 89 
                  +++  +++ ++++  ++p++Wp+++++ll+ +ss+  ++ +   lr+L+ l +  ++           ++  ++   +++ k  lr+  + ++ ++++
  KKY14345.1 111 KVKKAASLVATKIASVDFPDQWPELLPTLLHIISSNgaDEEVHGALRVLSDLVDTGFSedhffavardLVSGLHSIATNSQRKPILRALSMSVFRSCFD 209
                 57788899999**********************998888899999999998877666666666754444445666777888888888888889999999 PP

                 HHHHHHHCCHHHHHHHHHH CS
        Xpo1  90 ileqsqskkqsselveavL 108
                  le+ ++++  +  v+  L
  KKY14345.1 210 TLEMVMEEH--KVAVKGFL 226
                 999988865..55555555 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.5
                 HHHHHHHHCCHHHHHHHHHHHHHHHHT CS
        Xpo1  89 qileqsqskkqsselveavLkclsswv 115
                 + l+q  ++++s+e ++av+k ++s+ 
  KKY14345.1 360 NRLKQAPNGPASAEWLQAVMKLVTSYA 386
                 567777777789999999999999986 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHHHHHHTTTS-HHHHHT CS
        Xpo1  99 qsselveavLkclsswvswidiglivn 125
                  +s   e v++ l+ w+++++ + +++
  KKY14345.1 416 PRSASGELVIRGLGEWLRQVPAEALLS 442
                 456667788888899999988877765 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.0069
                 HHHCCHHHHHHHHHHHHHHHHTT..TS-HHHHHTSCHHHHHHHHCCSCCCHHHH CS
        Xpo1  94 sqskkqsselveavLkclsswvs..widiglivnnpllnllfqlLsdpelreaa 145
                  +s++ s+ +  a++++l+ +++    ++++ +++p++n++ +++ + +lre a
  KKY14345.1 534 AMSSDPSEVVQVACIRALQDFLQglPRSVSQPAQTPIINAISEYIASHDLRELA 587
                 334445688899***********66667889999***************99976 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTTS-HHHHHTSCHHHHHHHHC CS
        Xpo1  84 lelllqileqsqskkqsselveavLkclsswvswidiglivnnpllnllfqlL 136
                 +++l+++ ++  s+ q ++lv ++++++ss vs  ++    ++p+  l+ ++L
  KKY14345.1 617 INVLFTLASNGASNFQLASLVTETFEMISSSVSDLPLVEGHASPYSALCEKVL 669
                 46777777787777799*************99999987777776666666655 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 0.38
                 HHHHHHHHHHHHHHHTSHTT CS
        Xpo1  43 elllriLkvlpeEiadfsrs 62 
                 ++ l+iLkvl eE+++ s s
  KKY14345.1 935 PADLKILKVLVEELSSASAS 954
                 56699*********985544 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.67   1.7e+03       4      20 ..       7      23 ..       5      25 .. 0.88
   2 ?   -1.5   0.0       1.8   4.5e+03      10      22 ..     450     462 ..     446     463 .. 0.85
   3 ?    8.3   0.1    0.0012         3       8      30 ..     535     557 ..     531     558 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.67
                HHHHHHT-SSHHHHHHH CS
        HEAT  4 lllkllsDpspeVReaA 20
                +ll++ ++++ + R+aA
  KKY14345.1  7 HLLQNTQSTDESTRKAA 23
                478889*********98 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.8
                 T-SSHHHHHHHHH CS
        HEAT  10 sDpspeVReaAak 22 
                 sD+s++ ReaA++
  KKY14345.1 450 SDTSWKEREAALY 462
                 899**99999986 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0012
                 HHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   8 llsDpspeVReaAakaLgalaev 30 
                 + sDps  V  a+++aL +++++
  KKY14345.1 535 MSSDPSEVVQVACIRALQDFLQG 557
                 679*****************997 PP

>> RIX1  rRNA processing/ribosome biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.88   2.3e+03     134     159 ..     133     163 ..     131     165 .. 0.86
   2 ?    9.4   0.0   0.00032      0.81      47     116 ..     487     556 ..     437     599 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.88
        RIX1 134 pkfitallqlleee.....letvlealstll 159
                 p ++++ll +++++     ++ +l++ls+l+
  KKY14345.1 133 PELLPTLLHIISSNgadeeVHGALRVLSDLV 163
                 6788999999998899999999999999987 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00032
        RIX1  47 vtrilsLlqskspegrwaGvcLakvtveesgeellssgstWlrallsiLekpdppavlelaistlsrift 116
                    i+  lq ++p  r  ++ La+v+   +ge + +s+  +l    s  ++  +++v +++i++l++ ++
  KKY14345.1 487 QDFINHSLQVEDPFLRARAYLLAGVMSKTGGEAFQQSAMHYLGLAASAMSSDPSEVVQVACIRALQDFLQ 556
                 5679999*********************************************9************98766 PP

>> CAS_CSE1  CAS/CSE protein, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   7.9e-05       0.2     200     278 ..     758     839 ..     694     854 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 7.9e-05
    CAS_CSE1 200 aenklepvLgiFqkLiaskandeegFd...lLesvieslpaevlekylktilsllltrlqnsktekfkkrlvvflslvsakd 278
                 +++ +e +L i ++L++   +d+ + +   l  +++e+  ae l +yl ++l+ +  rl++     f+++l+  +  +s  +
  KKY14345.1 758 RKGGVESLLVIIDRLLSPTIDDNAATEvgaLAAELVEKAGAEKLGPYLLQLLQAVALRLDTAEKAPFIQSLILVFARLSLTA 839
                 5667899*************99999872225679*********************************999986655444444 PP

>> PI3Ka  Phosphoinositide 3-kinase family, accessory domain (PIK domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.2   3.2e+03      47      81 ..       5      40 ..       2      63 .. 0.69
   2 ?    9.2   0.0   0.00028      0.73      84     130 ..     773     824 ..     771     876 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.2
                HHHHHTTS-SSSHHHH.HHHHHHHTTSHHTTHHHHT CS
       PI3Ka 47 ltklLqsvkwseesev.kealelldsWaeididdaL 81
                +  lLq ++ ++es + + +l+ll+s a+ +   aL
  KKY14345.1  5 VLHLLQNTQSTDESTRkAAELQLLQSYANPSFPLAL 40
                567899888877766515679999998876666665 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00028
                 TSTTS--...HHHHHHHHHHHHHSHHHHHHHHHHHHHHHH..GGSSSSSSHH CS
       PI3Ka  84 Ldskfkd...esvreyavkvLekasdeelllYllQLVqal..kyepikdsal 130
                 L+++  d    +v + a + +eka  e+l  YllQL qa+  + +  ++++ 
  KKY14345.1 773 LSPTIDDnaaTEVGALAAELVEKAGAEKLGPYLLQLLQAValRLDTAEKAPF 824
                 555555545578999999********************86226666555554 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.45   1.2e+03      19      32 ..       7      23 ..       4      23 .. 0.81
   2 ?   -2.0   0.0       1.6   4.2e+03      11      20 ..     153     162 ..     133     169 .. 0.56
   3 ?   -3.4   0.0       4.5   1.1e+04      23      36 ..     538     551 ..     535     552 .. 0.52
   4 ?    7.2   0.0     0.002       5.2      20      39 ..     722     741 ..     720     743 .. 0.90
   5 ?   -3.6   0.0       5.4   1.4e+04      12      26 ..     939     953 ..     937     954 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.45
                HHTT...TSSHHHHHHH CS
         Arm 19 rLLs...sedeevqeeA 32
                +LL+   s+de+++++A
  KKY14345.1  7 HLLQntqSTDESTRKAA 23
                6777777*******998 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.6
                 TTHHHHHHHH CS
         Arm  11 aGavppLvrL 20 
                 +Ga+++L +L
  KKY14345.1 153 HGALRVLSDL 162
                 3455555554 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.5
                 TSSHHHHHHHHHHH CS
         Arm  23 sedeevqeeAawAL 36 
                 +++e vq ++ +AL
  KKY14345.1 538 DPSEVVQVACIRAL 551
                 44555555555555 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.002
                 HTTTSSHHHHHHHHHHHHHH CS
         Arm  20 LLssedeevqeeAawALsNL 39 
                 LLss d+e++++A++A+ ++
  KKY14345.1 722 LLSSSDPELLRPATSAVKHI 741
                 9***************9887 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 5.4
                 THHHHHHHHTTTSSH CS
         Arm  12 GavppLvrLLssede 26 
                  ++++Lv+ Lss + 
  KKY14345.1 939 KILKVLVEELSSASA 953
                 68999**99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1062 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 7271.86
//
Query:       KKY14346.1  [L=331]
Description: putative xanthine phosphoribosyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-07   31.5   0.0    2.1e-07   30.6   0.0    1.4  1  Pribosyltran     Phosphoribosyl transferase domain
  ------ inclusion threshold ------
       0.03   14.5   9.9       0.08   13.1   0.6    3.0  3  Uds1             Up-regulated During Septation
      0.035   13.2   0.3      0.035   13.2   0.3    1.5  2  Atg14            Vacuolar sorting 38 and autophagy-related su
      0.047   13.7   4.9       0.79    9.8   0.2    3.0  3  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding
      0.062   12.2   0.0      0.096   11.6   0.0    1.3  1  LMBR1            LMBR1-like membrane protein
       0.12   12.3   0.1        1.7    8.6   0.1    2.5  2  HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
       0.13   12.6   8.5        3.7    7.9   0.7    3.1  3  DUF641           Plant protein of unknown function (DUF641)
       0.17   12.4   6.9        1.3    9.6   0.1    3.5  3  Syntaxin-6_N     Syntaxin 6, N-terminal
       0.23   11.3   9.7       0.44   10.3   0.4    3.3  3  OEP              Outer membrane efflux protein
       0.99    9.4   8.5        1.1    9.3   4.6    2.3  2  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
          1    8.9  13.8       0.65    9.5   1.9    2.8  3  Filament         Intermediate filament protein
        1.7    9.0  12.0        3.8    7.9   1.2    3.2  3  Uso1_p115_C      Uso1 / p115 like vesicle tethering protein, 
        6.3    7.3  14.3         16    6.0   3.6    3.2  3  APG6_N           Apg6 coiled-coil region
          9    6.7   7.1        2.1    8.7   0.5    2.8  2  TSC22            TSC-22/dip/bun family


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.6e-10   2.1e-07      10     112 ..     139     255 ..     132     259 .. 0.89

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.6e-10
                   -EEEEEEETTEEEEEE--GGGEEEEEEETTTHHHHHHHHHHS......TT-EE-EEEEEE-TTT--EE..................EE----TTSEE CS
  Pribosyltran  10 aildavarlaaeileeyngkpdvvvgiargGvpfakiladeL......evplayvrkvkyrpdgseeaargssdes..........rlledpagkkV 90 
                   +i + +++ a++il++  +kp + ++i  gG+++a il + L      ++p+  +  + y++ g+   +++ s+               +++ gk V
    KKY14346.1 139 QIHQLCQESAERILND--FKPNLMIAIGGGGYVPARILRSFLkrpgsaNIPIQAIGLSLYENLGTDPDVETPSHTVtrtqwldlssLSMSNLVGKNV 233
                   4455999999999999..******************************99999999999999888888887777668899****998889999**** PP

                   EEE-SEESSSHHHHHHHHHHHC CS
  Pribosyltran  91 liVDDildtGgTllaalelLke 112
                   liVD + dt +Tl++a++ L++
    KKY14346.1 234 LIVDEVDDTRTTLEYAVRELEK 255
                   ******************9986 PP

>> Uds1  Up-regulated During Septation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.8     0.019        24      61     114 ..      14      62 ..       2      65 .. 0.78
   2 ?   13.1   0.6   6.3e-05      0.08      19      61 ..      82     125 ..      77     149 .. 0.89
   3 ?    0.7   0.1      0.43   5.6e+02      90     105 ..     249     264 ..     228     284 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.019
        Uds1  61 yssskksakssaarsnskssreslakaeeelaeserkvdelaselekleeraae 114
                 y s++    ++++ s  +s++ s + ae+e+   ++ vd l  el  ++ r+a+
  KKY14346.1  14 Y-SQQ----AEGQASATASTHYSFQPAEDEVLRRTQEVDRLRIELDDARAREAR 62 
                 3.222....34566778888999*************************999876 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 6.3e-05
        Uds1  19 sleeVeelkkelkaLeerlealrkk.LaletklrdaarsLsrly 61 
                 + eeVe l+  ++aL e +e++r +  +l+  lrda ++L++l+
  KKY14346.1  82 DSEEVERLRGTVQALREACETARVEaANLHRDLRDAQMELEKLQ 125
                 689*******************9651579*************98 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.43
        Uds1  90 elaeserkvdelasel 105
                 ++ e+e+ v+ + ++l
  KKY14346.1 249 AVRELEKDVETARQKL 264
                 2222233333333333 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   2.7e-05     0.035      26     142 ..      41     157 ..      20     172 .. 0.81
   2 ?   -2.9   0.1       2.1   2.7e+03      86     106 ..     246     266 ..     237     286 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.7e-05
       Atg14  26 elrerlaklksekeslkkkiekalegke..eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslq 122
                 +  +++ +l++e +  + +  +a++ +e  e+   ++   ++++ +e+l+ +++ lre +++ +    +l + +++++++l+kl++ +  + +++  ++
  KKY14346.1  41 RRTQEVDRLRIELDDARAREARAIADREdaETRWIAAIGTQDSEEVERLRGTVQALREACETARVEAANLHRDLRDAQMELEKLQSLI--MVEKIYVTY 137
                 5568889999999999999999999999442223344445778888889999999999999999999999999999999999999988..677777888 PP

       Atg14 123 neleerrkkqiaklqdaikr 142
                 n++++  +++ ++++++ k+
  KKY14346.1 138 NQIHQLCQESAERILNDFKP 157
                 99999888888888888775 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.1
       Atg14  86 lkdklsqlkkeieekkkklak 106
                 l+  +++l k +e +++kl k
  KKY14346.1 246 LEYAVRELEKDVETARQKLGK 266
                 455556666666666666644 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.3   4.2e+03      58      72 ..      41      55 ..      30      58 .. 0.68
   2 ?    9.8   0.2   0.00062      0.79      26      68 ..      84     126 ..      79     129 .. 0.72
   3 ?    4.6   0.4     0.025        32      39      60 ..     247     268 ..     231     271 .. 0.55

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.3
  TMF_DNA_bd 58 klekeleeleerlke 72
                + ++e+++l+ +l+ 
  KKY14346.1 41 RRTQEVDRLRIELDD 55
                456777777777665 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00062
  TMF_DNA_bd  26 kkelklnntikkLrkknkelekeikelkkkleklekeleelee 68 
                  +  +l+ t+  Lr+  + +  e ++l + l++ ++ele+l++
  KKY14346.1  84 EEVERLRGTVQALREACETARVEAANLHRDLRDAQMELEKLQS 126
                 4455677788888888888888888888888888888888776 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.025
  TMF_DNA_bd  39 rkknkelekeikelkkklekle 60 
                    ++elek++++  +kl k e
  KKY14346.1 247 EYAVRELEKDVETARQKLGKTE 268
                 3334444455554444444444 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.5e-05     0.096     200     292 ..      98     269 ..      88     304 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.5e-05
       LMBR1 200 eelkklyfeaaklntekeeaerele..dllkevkklrksisesdp.lrkyleeilk........................................... 252
                 e  + +++eaa+l+ ++ +a+ ele  + l  v+k++ ++++ ++  ++  e il+                                           
  KKY14346.1  98 EACETARVEAANLHRDLRDAQMELEklQSLIMVEKIYVTYNQIHQlCQESAERILNdfkpnlmiaiggggyvparilrsflkrpgsanipiqaiglsly 196
                 56788999****************93334556778888888889945599999999**************88888888888888888777777777777 PP

       LMBR1 253 .........kvPeeiaeklks........................nenkteeslaklekqlikalqkrertek 292
                          ++P++  ++++                         +++  e ++ +lek++ +a+qk  +te+
  KKY14346.1 197 enlgtdpdvETPSHTVTRTQWldlsslsmsnlvgknvlivdevddTRTTLEYAVRELEKDVETARQKLGKTEQ 269
                 7777777776666666665558777777777776666666666544444555677777777777777777665 PP

>> HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.46   5.9e+02      49      65 ..      24      40 ..      14      43 .. 0.83
   2 ?    8.6   0.1    0.0013       1.7      12      40 ..     243     271 ..     238     273 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.46
  HU-CCDC81_bac_2 49 lneegkleFepseagnl 65
                      ++  +++F+p+e+++l
       KKY14346.1 24 ATASTHYSFQPAEDEVL 40
                     567789*****999876 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0013
  HU-CCDC81_bac_2  12 gisyeeAlqkiekeveelkqeLeeegrve 40 
                       ++ e A++++ek+ve+ +q+L ++++ +
       KKY14346.1 243 RTTLEYAVRELEKDVETARQKLGKTEQTK 271
                      678899*****************999876 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.2    0.0039         5      72     122 ..      10      60 ..       2      67 .. 0.85
   2 ?    7.9   0.7    0.0029       3.7      68     113 ..      82     126 ..      67     133 .. 0.83
   3 ?    0.6   0.1      0.52   6.6e+02      93     118 ..     242     267 ..     219     272 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0039
      DUF641  72 eeseleaeiqeqrsllktyeitvkkleaelkakdseieeLkekLeeaeksn 122
                 ++ + +++++ q s+ ++     +  e e+ ++ +e+++L+ +L++a++++
  KKY14346.1  10 NNVRYSQQAEGQASATASTHYSFQPAEDEVLRRTQEVDRLRIELDDARARE 60 
                 566677788889999999999999**********************99876 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0029
      DUF641  68 aseaeeseleaeiqeqrsllktyeitvkkleaelkakdseieeLke 113
                 +s +e ++l+  +q +r++ +t  + + +l+++l+  ++e+e+L++
  KKY14346.1  82 DS-EEVERLRGTVQALREACETARVEAANLHRDLRDAQMELEKLQS 126
                 33.7889999999999999999999999999999999999999986 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.52
      DUF641  93 tvkkleaelkakdseieeLkekLeea 118
                 t   le  +++ ++++e  ++kL ++
  KKY14346.1 242 TRTTLEYAVRELEKDVETARQKLGKT 267
                 44555556666666666666666555 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.87   1.1e+03      71      96 ..      29      54 ..      15      57 .. 0.68
   2 ?    2.4   2.2      0.18   2.3e+02      39      69 ..     103     132 ..      32     156 .. 0.71
   3 ?    9.6   0.1     0.001       1.3      23      70 ..     216     270 ..     208     298 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.87
  Syntaxin-6_N 71 pskfkidekelsrrrafveevreevk 96
                   + f+  e+e+ rr + v+++r e++
    KKY14346.1 29 HYSFQPAEDEVLRRTQEVDRLRIELD 54
                  34577777888888887777776654 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.18
  Syntaxin-6_N  39 ldetrteLrkalrsiewdledLeetvrivek 69 
                    +    +L++ lr+++ +le L+  + +vek
    KKY14346.1 103 ARVEAANLHRDLRDAQMELEKLQSLI-MVEK 132
                   33334566777777777777777777.5555 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.001
  Syntaxin-6_N  23 rwerlledtsss.......tseeldetrteLrkalrsiewdledLeetvrivekn 70 
                   +w +l +++ s+         +e+d+trt L+ a+r++e+d+e  ++  +  e+ 
    KKY14346.1 216 QWLDLSSLSMSNlvgknvlIVDEVDDTRTTLEYAVRELEKDVETARQKLGKTEQT 270
                   55555555555345566667899******************99877777666664 PP

>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.4   0.00035      0.44     150     188 .]      42      79 ..      38      79 .. 0.91
   2 ?    2.8   0.6     0.072        92      96     131 ..      93     128 ..      85     144 .. 0.74
   3 ?    2.8   0.1      0.07        90      99     124 ..     239     264 ..     236     272 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00035
         OEP 150 islldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                  ++ +v++ + +l++ara++a a++++++a++++ +++g
  KKY14346.1  42 RTQ-EVDRLRIELDDARAREARAIADREDAETRWIAAIG 79 
                 567.8***************************9988887 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.072
         OEP  96 eaqleqarqqlrlevaqaylqlllakeqlelaeeal 131
                  + l++a ++ r e+a++  +l+ a+ +le ++ ++
  KKY14346.1  93 VQALREACETARVEAANLHRDLRDAQMELEKLQSLI 128
                 556777777778888888888888888887777666 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.07
         OEP  99 leqarqqlrlevaqaylqlllakeql 124
                  +++r +l+++v+++  ++++a++ l
  KKY14346.1 239 VDDTRTTLEYAVRELEKDVETARQKL 264
                 68899999999999999999999987 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.6   0.00087       1.1      24     103 ..      44     128 ..      35     151 .. 0.83
   2 ?    1.7   0.1      0.19   2.4e+02      96     114 ..     250     268 ..     224     286 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00087
  CENP-F_leu_zip  24 dkvenLerelemseenqekvileaEtskaevet.....lkeeieelaeelreleldLvalrsekeeLekelqkkqervseLesln 103
                     + v++L  el ++ +   ++i + E++     +       ee+e+l+ + + l+   ++ r e  +L+++l++ q + + L+sl 
      KKY14346.1  44 QEVDRLRIELDDARAREARAIADREDAETRWIAaigtqDSEEVERLRGTVQALREACETARVEAANLHRDLRDAQMELEKLQSLI 128
                     568888888888888888888888877655443223234689************************************9999875 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.19
  CENP-F_leu_zip  96 vseLeslnsslenlleekE 114
                     v eLe+  ++ ++ l + E
      KKY14346.1 250 VRELEKDVETARQKLGKTE 268
                     3344444444444444444 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.9   0.00051      0.65     186     256 ..       7      77 ..       3      83 .. 0.91
   2 ?    5.5   1.4    0.0084        11     216     255 ..      84     123 ..      74     162 .. 0.60
   3 ?    0.7   0.0      0.24   3.1e+02     234     260 ..     238     264 ..     214     273 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00051
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 186 reeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleae 256
                 r+e +  y+++ e   +a ++ + + + a+ e+    +++++l+iel++ ++ +a   a  +++e r  a+
  KKY14346.1   7 RQENNVRYSQQAEGQASATASTHYSFQPAEDEVLRRTQEVDRLRIELDDARAREARAIADREDAETRWIAA 77 
                 7888999******99999999**********************************9999999999987655 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0084
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 216 eeitelrrqiqsleieleslkkqkasleaqlaeleerlea 255
                 ee++ lr ++q+l+   e  + ++a+l++ l++++ +le+
  KKY14346.1  84 EEVERLRGTVQALREACETARVEAANLHRDLRDAQMELEK 123
                 5666666666666666666666666666666665554443 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 234 slkkqkasleaqlaeleerleaelekl 260
                 ++  ++ +le +++ele+ +e++++kl
  KKY14346.1 238 EVDDTRTTLEYAVRELEKDVETARQKL 264
                 444455555555555555555555444 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   1.2     0.003       3.8      33      84 ..      14      69 ..       3      72 .. 0.76
   2 ?    2.6   0.7      0.13   1.7e+02      47      85 ..      86     124 ..      76     132 .. 0.63
   3 ?    4.7   0.1     0.029        37      47      74 ..     243     270 ..     235     294 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.003
  Uso1_p115_C 33 sleqk....eakkaaesqakeleaenkklekeleklraelkeekekekekqkEldD 84
                  ++q+    +a ++ ++  + +e+e+ + ++e++ lr el++++ +e  + ++ +D
   KKY14346.1 14 YSQQAegqaSATASTHYSFQPAEDEVLRRTQEVDRLRIELDDARAREARAIADRED 69
                 444443445667777888889***********************999877666665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.13
  Uso1_p115_C  47 akeleaenkklekeleklraelkeekekekekqkEldDL 85 
                   ++l+ ++++l+++ e++r e+++   + +++q El+ L
   KKY14346.1  86 VERLRGTVQALREACETARVEAANLHRDLRDAQMELEKL 124
                  344555566666666666666666666666567777766 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.029
  Uso1_p115_C  47 akeleaenkklekeleklraelkeekek 74 
                   ++le  + +lek++e++r++l + +++
   KKY14346.1 243 RTTLEYAVRELEKDVETARQKLGKTEQT 270
                  4566667777777777777777776665 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4  10.5       1.2   1.5e+03      52      95 ..      82     125 ..       8     126 .. 0.54
   2 ?    6.0   3.6     0.013        16      53      96 ..      83     126 ..      76     156 .. 0.73
   3 ?    4.9   0.0     0.028        36      46      77 ..     240     271 ..     210     274 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.2
      APG6_N  52 leeeleklekeeeelleeLkelekereeleaelaaleeeleale 95 
                   ee+e+l+ + ++l e  + +  e ++l ++l++++ ele+l+
  KKY14346.1  82 DSEEVERLRGTVQALREACETARVEAANLHRDLRDAQMELEKLQ 125
                 22334444444444444444444444444444444444444443 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.013
      APG6_N  53 eeeleklekeeeelleeLkelekereeleaelaaleeelealee 96 
                  ee+e+l+ + ++l e  + +  e ++l ++l++++ ele+l+ 
  KKY14346.1  83 SEEVERLRGTVQALREACETARVEAANLHRDLRDAQMELEKLQS 126
                 56777777777888888888888888888888888888877775 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.028
      APG6_N  46 deeleeleeeleklekeeeelleeLkeleker 77 
                 d+ +  le  +++lek+ e++ ++L ++e+++
  KKY14346.1 240 DDTRTTLEYAVRELEKDVETARQKLGKTEQTK 271
                 5677889999***************9999976 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.5    0.0017       2.1      14      50 ..      84     120 ..      83     129 .. 0.86
   2 ?    0.8   0.1       0.5   6.4e+02       8      38 ..     246     258 ..     236     270 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0017
       TSC22  14 EeVevLkekIkeLeernseleeENslLkalaspeqle 50 
                 EeVe L+ +++ L e  ++ + E + L + +   q+e
  KKY14346.1  84 EEVERLRGTVQALREACETARVEAANLHRDLRDAQME 120
                 9**********************99999888777665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.5
       TSC22   8 LmfAVrEeVevLkekIkeLeernseleeENs 38 
                 L +AVrE                  le++ +
  KKY14346.1 246 LEYAVRE------------------LEKDVE 258
                 4566665..................333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1389  (0.0774723); expected 358.6 (0.02)
Passed bias filter:                      798  (0.0445089); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.53
# Mc/sec: 1863.48
//
Query:       KKY14347.1  [L=103]
Description: putative dolichyl-phosphate mannosyltransferase polypeptide 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-22   79.6   0.0    1.7e-22   79.4   0.0    1.1  1  DPM3      Dolichol-phosphate mannosyltransferase subunit 3 (D


Domain annotation for each model (and alignments):
>> DPM3  Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.0   9.5e-27   1.7e-22       1      90 [.       4     100 ..       4     101 .. 0.90

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 9.5e-27
        DPM3   1 Mtraqktlalallllalwlalllrlvslpl...skvqdevvpvlPlwalvlfGayslatlgygvltfndcpeaakeLqke....ikeAkadLrkkGv 90 
                 Mtra +t+++++++++++ al++    + l   s++++++vp++P+wa++++++y+l +lgygvl fnd++ a+keL+ +    i+ Ak+ L+++Gv
  KKY14347.1   4 MTRAGETFLALTFAGTVYSALYFAPEMFLLpkeSDKYEQIVPYIPFWAVIAIACYLLGRLGYGVLIFNDTKGAYKELMGDsdngIEGAKKALKARGV 100
                 **********************8654332233599*******************************************877777************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 681.51
//
Query:       KKY14361.1  [L=517]
Description: putative purine-cytosine permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-48  164.3  35.5    4.8e-48  164.0  35.5    1.0  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami
  ------ inclusion threshold ------
       0.49    8.9   4.4        5.2    5.5   0.2    2.4  2  FUSC            Fusaric acid resistance protein family
       0.57    9.6   2.3       0.83    9.1   0.2    2.2  2  DUF3087         Protein of unknown function (DUF3087)


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.0  35.5     8e-52   4.8e-48       2     440 .]      64     476 ..      63     476 .. 0.93

  Alignments for each domain:
  == domain 1  score: 164.0 bits;  conditional E-value: 8e-52
  Transp_cyt_pur   2 vpe.eeRtwktlnlfsiWlganlnintwvigalg.lalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrv 94 
                     vpe e+++ +t+ + ++W +an++++ ++igal+ +++gL++ +++l+i + n++g i+va ++++G++ G++++ilsR+ fG +g  + ++   
      KKY14361.1  64 VPEdERTDTSTFKVGTMWCAANMVVSSFSIGALAiPVFGLGFVDALLTIFFINILGIIPVAYFSAFGPRFGMRQMILSRFWFGYYGVKVIAVFNC 158
                     88945555689***********************99***************************************************99999999 PP

  Transp_cyt_pur  95 viaivwfgvqawiGsealllmlgkifgkwleiggailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaegGp 189
                     ++ ++w ++++++Gs+ + ++ + + g   ++g  i++ + t++vt+f++ vv+l++++ +++ + +f  +   ++ ++ f      ++  e+G+
      KKY14361.1 159 LACLGWSATNTIVGSQLIHSVNNDVPG---WAG-VIIIGAGTFIVTLFGYKVVHLYEMYSWIPCFIVFLIVLGTFAHSGDFSNIPMNAGSSEAGS 249
                     999************999999999966...9**.9999999****************************************************** PP

  Transp_cyt_pur 190 vldkavklgkselflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakfdetagv 284
                     +l+          f+++v+g++ g+a+++    D+t y + ++s  k++l+++ +l+++l+++ +l+ a+ +a  + +a++      + d+ +g+
      KKY14361.1 250 ILS----------FAASVFGFATGWASYAS---DYTCYQPVTTSRRKVFLYVFIGLMFPLCFTEMLGLAIITASVNNPAYADA---YNNDS-VGG 327
                     ***..........88**************9...**********************************9988887666665555...24444.6** PP

  Transp_cyt_pur 285 llililvalaqlgvnisanllsagldlaallP..kkinikrgsliaavialvivpwkllsssskl..ftaflsllavflspvagviiadyfvvrr 375
                     ll+ +l++   +g++ ++ +++a++ + +++P  + ++++ ++l   + ++++++w+  ++      +++  s +  +l++++ +i  + +++++
      KKY14361.1 328 LLAQVLFPH-LHGFGKFCLVILALSIIGNNCPniYSLTFSLQILTRYAQKVPRFLWTFFGTLVYCavAIPGYSHFESVLENFMLIIA-YWLAIYE 420
                     ****99996.68*************************************************99988888889999999*****8876.******* PP

  Transp_cyt_pur 376 gylklaalytrrrgsaYwyrkgvNwravaayivGiaaglvgvagsvgikvvkgaeklfdlsylvG 440
                     +++ ++++++r+ +  Y   + + +  ++ +i+++aa   g         v+ga  ++ +++++G
      KKY14361.1 421 AIALSEHFIFRHGFTGYIASQYDQPSKLPPGIAALAAFCFG---------VFGAIMGMSQTWFLG 476
                     **********88888898899999999**999999999999.........889999999999988 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.2   0.00087       5.2     409     438 ..     325     354 ..     324     356 .. 0.91
   2 ?    4.4   0.5    0.0019        11      50      96 ..     381     427 ..     378     437 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.00087
        FUSC 409 aallllfvvlPhvdgfplLvlvlapplllg 438
                 +++ll  v++Ph++gf  ++lv++++ ++g
  KKY14361.1 325 VGGLLAQVLFPHLHGFGKFCLVILALSIIG 354
                 68999******************9988876 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0019
        FUSC  50 lyRllGTllGaaaavllvalfvqapllfllalalWiglclalslldr 96 
                 l+ ++GTl+ +a+a+    +f    + f+l++a W+++  a++l ++
  KKY14361.1 381 LWTFFGTLVYCAVAIPGYSHFESVLENFMLIIAYWLAIYEAIALSEH 427
                 6889**********************************999998655 PP

>> DUF3087  Protein of unknown function (DUF3087)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.2   0.00014      0.83      18      61 ..      78     125 ..      66     143 .. 0.86
   2 ?   -1.0   0.1      0.18   1.1e+03      29      71 ..     361     402 ..     357     418 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00014
     DUF3087  18 vivalvallavlsllfstllialfgeeevs....nfhlnllGvvlalv 61 
                  ++ ++a ++v+s+ +++l+i +fg + v+     f +n+lG++  + 
  KKY14361.1  78 GTMWCAANMVVSSFSIGALAIPVFGLGFVDalltIFFINILGIIPVAY 125
                 57899********************99999889899******996554 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.18
     DUF3087  29 lsllfstllialfgeeevsnfhlnllGvvlalvltaailrklk 71 
                  sl+fs  +++ ++ ++v  f + ++G ++ +++ +   +++ 
  KKY14361.1 361 YSLTFSLQILTRYA-QKVPRFLWTFFGTLVYCAVAIPGYSHFE 402
                 56666655555555.6788999999999988887776666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3391.13
//
Query:       KKY14362.1  [L=919]
Description: putative heavy metal tolerance protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-33  114.8   0.0      8e-33  113.9   0.0    1.5  1  ABC_tran       ABC transporter
    2.2e-32  112.8   8.1    2.2e-32  112.8   8.1    2.7  4  ABC_membrane   ABC transporter transmembrane region
    6.3e-07   29.1   0.2    1.4e-05   24.6   0.2    2.1  1  SMC_N          RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.022   15.1   0.2       0.14   12.4   0.2    2.2  1  AAA_22         AAA domain
      0.025   14.8   0.6       0.54   10.5   0.6    2.6  1  SbcCD_C        Putative exonuclease SbcCD, C subunit
      0.068   12.3   0.0       0.17   11.0   0.0    1.6  2  DUF815         Protein of unknown function (DUF815)
      0.078   12.7   0.1        0.2   11.4   0.1    1.7  1  AAA_29         P-loop containing region of AAA domain
       0.11   12.9   0.0       0.27   11.6   0.0    1.7  1  AAA_16         AAA ATPase domain
       0.12   12.3   0.0        0.3   11.0   0.0    1.6  1  RsgA_GTPase    RsgA GTPase
       0.15   11.3  10.9        0.1   11.9   0.8    2.8  3  7tm_1          7 transmembrane receptor (rhodopsin family)
        1.3    8.1   5.4        1.3    8.1   2.7    2.4  2  TMEM192        TMEM192 family


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.9   0.0   4.9e-36     8e-33       1     137 []     660     809 ..     660     809 .. 0.89

  Alignments for each domain:
  == domain 1  score: 113.9 bits;  conditional E-value: 4.9e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHHST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsklg 93 
                 l +v++ + +g+++a+vGe+G GKSt+++ll + ++pt+G i++d++d+++ ++ s+r+++gv+pq++ lf+e+ +++       + dee+++a +  +
  KKY14362.1 660 LTDVNFRCAPGTTTALVGESGGGKSTVFRLLFRFYNPTQGLITVDDNDVQSLSIDSVRQHVGVVPQDTVLFNETLMYNIryakqdATDEEVYAACRAAS 758
                 679**********************************************************************96655599888755555555555555 PP

                 TGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  94 lke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +++         +t+v++++  LSgG+kqrva+ar++lk+pk++llDE+ta
  KKY14362.1 759 IHDkilsfpdGYETKVGERGLRLSGGEKQRVAIARTILKNPKIILLDEATA 809
                 55566665557899999********************************96 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.2       5.8   9.4e+03     147     162 ..      31      46 ..      26      51 .. 0.46
   2 ?    1.3   0.2      0.14   2.3e+02      37     100 ..      87     158 ..      75     164 .. 0.70
   3 ?   -3.3   0.2       3.4   5.6e+03      63      74 ..     219     235 ..     208     252 .. 0.45
   4 !  112.8   8.1   1.3e-35   2.2e-32       3     274 .]     324     598 ..     322     598 .. 0.97

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 5.8
                   HHHHHHHHHHHHHHHH CS
  ABC_membrane 147 llailpliilvsavia 162
                   +l i++l++++s  i 
    KKY14362.1  31 VLLIVFLVAFISRTIY 46 
                   3444444444444443 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.14
                   H.....HHHHHHHHHHHHHHHHHHHHHHHHHHHH...HH.HHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHH CS
  ABC_membrane  37 t.....ealnvysllllllglaqfilallqsyll...nv.tgerlskrlrrklfkkilrqpmsffdtnsvGel 100
                   +     +++n +++++l+ ++a++++ ++q+ l+   n+ +g+ ++  + +++f     + +s  dt+++ ++
    KKY14362.1  87 FspnakFTINWLMVIVLVTFVANAFAIIAQTVLYrheNWwCGQSAVIYITASFFVWAVVL-ISLVDTTPSPTI 158
                   144445678999999999999999999999999988844588888888888888655555.555555555555 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 3.4
                   HHH.....HHHHHHHHH CS
  ABC_membrane  63 yll.....nvtgerlsk 74 
                    +l     + +++++s+
    KKY14362.1 219 VVLltlimIFAAIKISR 235
                   22221111223333333 PP

  == domain 4  score: 112.8 bits;  conditional E-value: 1.3e-35
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSC CS
  ABC_membrane   3 liillailagvlsplfplvlgrildtlldkgdpet...ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtns 96 
                   l++ l +++ v+++l+p+  g+i+  l +  d      + ++ ++++l  +   q++l+ l++yl+  +++++ ++l + +f++++ +++ f+  ++
    KKY14362.1 324 LCFTLVVIQRVINVLVPVQVGNITIALAGEDDKGVrvpWLTITFYVFLRWIQGPQGLLSALRNYLWLPVSQYAYRELSTAAFQHVHGLSLDFHLGKK 420
                   78999**********************99777777999999999999************************************************** PP

                   HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH.HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH CS
  ABC_membrane  97 vGellsrltndvsklrdglgeklglffqslltfvgglivmfy.lgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirt 192
                   +Ge++s l+   + ++++l +  + +   ++ ++++++++ + + ++l+lv+ ++++ +i++++ ia++ +++++++ +a     +v ++sl  ++t
    KKY14362.1 421 TGEVISALN-KGNAINTFLEQVTFSLGPMVFDLIVAVVYLGIkFDVYLSLVVAVVTFFYIYITIRIAQWRQEVRRQMVDADRMEDAVKNDSLVSYET 516
                   ********6.6677******************99999999999****************************************************** PP

                   HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 193 VkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfgal 274
                   Vk+f++e+y+ +++  a++ ++ a ++++ + ++++++++++++l+ ++ +++ +++v ++e +vgd+v++l+++a+l+ +l
    KKY14362.1 517 VKYFNAERYEFQRYRGAVKAFQVAEKRVIASLNVMNVAQNSCFMLALLVSCFIEAFQVATNEKTVGDFVTLLTYLAQLQAPL 598
                   ******************************************************************************9986 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.8e-09   1.4e-05     113     209 ..     740     849 ..     660     854 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.8e-09
                 ETTEEE-HHHHHHHHHCTT-STT.................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 113 ingkevtkkevsellesagiske.................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfiv 194
                   ++++t +ev    + a i+ +                  LSgGek+ va+a        k   + llDe  aaLD +  + + e +++  +   +iv
  KKY14362.1 740 YAKQDATDEEVYAACRAASIHDKilsfpdgyetkvgerglRLSGGEKQRVAIART----ILKNPKIILLDEATAALDTETEEHIQEAFRTLGEGRTMIV 834
                 34566666666666666666666888888888888888889*******9998755....45666799******************************** PP

                 E-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxxxx RF
       SMC_N 195 islreemlekadklv 209
                 i++r  +++ ad+++
  KKY14362.1 835 IAHRLSTITSADQIL 849
                 ***********9975 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   8.5e-05      0.14       8      32 ..     673     697 ..     668     838 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.5e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldee 32 
                 ++++GesG GK+t+ r l++ ++  
  KKY14362.1 673 TALVGESGGGKSTVFRLLFRFYNPT 697
                 789*****************99533 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.6   0.00033      0.54      20      89 ..     768     824 ..     759     825 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00033
     SbcCD_C  20 dgkekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 dg e+++ ++  +lSGGekq +       a+a  +       +++++++LDEA + lD e+ + + e+++
  KKY14362.1 768 DGYETKVGERGLRLSGGEKQRV-------AIARTIL------KNPKIILLDEATAALDTETEEHIQEAFR 824
                 5666677777777788888432.......2333333......3589**************9998888776 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0001      0.17      52     119 ..     669     737 ..     651     745 .. 0.80
   2 ?   -4.0   0.1         4   6.5e+03     199     227 ..     871     899 ..     869     907 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0001
      DUF815  52 pannvLLwGarGtGKSslvkallneyaeegLrlievekedlkel..pklvellrerperfilfvDDLsFe 119
                 p     L+G+ G GKS++ + l++ y+ +   li v+ +d+++l  +++ +++  +p+  +lf   L ++
  KKY14362.1 669 PGTTTALVGESGGGKSTVFRLLFRFYNPT-QGLITVDDNDVQSLsiDSVRQHVGVVPQDTVLFNETLMYN 737
                 5556679************9988877665.5789999999998633689999*9*******998887765 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 4
      DUF815 199 eYleiveklakklglelekeeleeeAlew 227
                 +Y ++ +k ++ ++ ++e eel+++A   
  KKY14362.1 871 KYASMWRKQIRAQKAAVEAEELRKRARDI 899
                 68888889999999999999999999765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00012       0.2      17      39 ..     665     687 ..     658     690 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
      AAA_29  17 ieidlkgatlltGpsGsGKSTll 39 
                 ++  +  +t l+G+sG GKST++
  KKY14362.1 665 FRCAPGTTTALVGESGGGKSTVF 687
                 55565569*************85 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00017      0.27      25      52 ..     671     710 ..     658     836 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
      AAA_16  25 elvllsGesGvGKsslvrellralekd............g 52 
                   + l+GesG GKs++ r l+r ++ +             
  KKY14362.1 671 TTTALVGESGGGKSTVFRLLFRFYNPTqglitvddndvqS 710
                 56889*****************999884333333333330 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00018       0.3      87     119 ..     657     690 ..     643     716 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHH CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLinal 119
                  k++l++++ +++   t++lvG+SG GKSt+   l
   KKY14362.1 657 KTALTDVNFRCAPgTTTALVGESGGGKSTVFRLL 690
                  4567777888877699*************98776 PP

>> 7tm_1  7 transmembrane receptor (rhodopsin family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.8   6.2e-05       0.1     150     259 ..      21     151 ..       7     152 .. 0.67
   2 ?   -1.5   0.0      0.78   1.3e+03     149     180 ..     211     243 ..     195     370 .. 0.66
   3 ?    4.5   1.6     0.011        19     155     238 ..     464     580 ..     440     599 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.2e-05
                 HHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHSHCCH.....................HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       7tm_1 150 fsavlsfilPllvivilyarifrtvlktsrtktskskng.....................gsstpplkavrekkaartlgivvavfivcwlPftiiyll 227
                 +  + + +  +l+iv+l a+i rt+ kt r  t+ ++++                      +++p ++ +++  +   ++iv+++f+   + +    +l
  KKY14362.1  21 IAVTKTVYPCVLLIVFLVAFISRTIYKTYRDPTTAEESCltgpggrplpqrrksakrivkTNDRPDFSPNAKFTINWLMVIVLVTFVANAFAIIAQTVL 119
                 3444445556889*********************88888**8888777766554444444333343444444555556666666676666666665666 PP

                 HHH.STTSCCHHHHHHHHHHHHHHHHHHHHHHH CS
                 xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       7tm_1 228 qal.svqceasellptalkliavwlgysnsavN 259
                 + + ++ c +s  ++   ++++ w  ++ s+v+
  KKY14362.1 120 YRHeNWWCGQSAVIYITASFFV-WAVVLISLVD 151
                 6557778888888887776555.9988888775 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.78
                 HHHHHHHTHH.HHHHHHHHHHHHHHHHHHHHCH CS
                 xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
       7tm_1 149 ifsavlsfil.Pllvivilyarifrtvlktsrt 180
                 +++ ++ f++  +l++++  ++i r ++++  +
  KKY14362.1 211 VICYFIRFVVlLTLIMIFAAIKISRSARSSFMK 243
                 444444444424555666666666666655444 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.011
                 HTHHHHHHHHHHHHHHHHHHHHHHCHHHHSHCCH................................HHHHHC....TTCHHHHHHHHHH.HHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................xxxxxx....xxxxxxxxxxxxx.xxxxxxxxx RF
       7tm_1 155 sfilPllvivilyarifrtvlktsrtktskskng................................gsstpp....lkavrekkaartl.givvavfiv 216
                   +l l+v v++ + i++t++  + +++++++                                       +    + +v+ek+++  l ++ va   +
  KKY14362.1 464 DVYLSLVVAVVTFFYIYITIRIAQWRQEVRRQMVdadrmedavkndslvsyetvkyfnaeryefqrY----RgavkAFQVAEKRVIASLnVMNVAQNSC 558
                 4678889999999999999988888888855554666666665555555555555444444443332....0333333444556555441444555566 PP

                 HHHHHHHHHHHHHHSTTSCCHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
       7tm_1 217 cwlPftiiyllqalsvqcease 238
                 ++l + +  +++a++v++++++
  KKY14362.1 559 FMLALLVSCFIEAFQVATNEKT 580
                 6677777777777765555544 PP

>> TMEM192  TMEM192 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.7   0.00078       1.3       7      74 ..      77     146 ..      72     175 .. 0.87
   2 ?   -1.6   0.0      0.73   1.2e+03      90     147 ..     301     369 ..     299     376 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00078
     TMEM192   7 paleseeepeFkplptvplaslllllsvalvvlgivlavlcsdeenkedkcvyfvllylrvil..Wlltl 74 
                  +++++++p+F p     + +l +++ v++v  ++ ++++ +  ++++  c ++ ++y+ + +  W+++l
  KKY14362.1  77 RIVKTNDRPDFSPNAKFTINWLMVIVLVTFVANAFAIIAQTVLYRHENWWCGQSAVIYITASFfvWAVVL 146
                 6788999*********************************9999999999********877663366554 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.73
     TMEM192  90 kGYldfyrstkrlkrlpLiivSlgnavLLlvlavlrslykkek...........aeqalsealspllfv 147
                 +GY  f   +   k   L+++   +  L++++ v++ l++ +             +++ +++l+ + +v
  KKY14362.1 301 RGYKVFFPYLWPAKSWKLQLIAMLCFTLVVIQRVINVLVPVQVgnitialagedDKGVRVPWLTITFYV 369
                 678888888888889999999999999999999998887766656666666555555556666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (919 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       967  (0.053935); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:00.57
# Mc/sec: 4827.17
//
Query:       KKY14363.1  [L=729]
Description: putative wd repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.6e-16   57.9  12.9    7.1e-06   26.7   0.2    5.5  5  WD40         WD domain, G-beta repeat
    2.2e-05   24.6   0.3       0.36   11.1   0.0    4.1  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    2.7e-05   24.1   0.0      0.068   13.0   0.0    2.4  2  eIF2A        Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.45   2.7e+03      24      38 .]     149     171 ..     134     171 .. 0.66
   2 !   19.7   0.0   1.9e-07    0.0011       9      38 .]     184     215 ..     177     215 .. 0.81
   3 !   12.8   0.4   2.8e-05      0.17       3      38 .]     230     267 ..     228     267 .. 0.81
   4 !   26.7   0.2   1.2e-09   7.1e-06       8      38 .]     279     310 ..     273     310 .. 0.90
   5 ?    2.6   0.4     0.047   2.8e+02      21      38 .]     347     370 ..     339     370 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.45
                 E........EEEE.ETTSEEEEEE CS
        WD40  24 w........lasG.sdDgtvriWd 38 
                 w        +a++ s +g + i+d
  KKY14363.1 149 WshkehdtkIATAaS-NGRIVIYD 171
                 333333445665526.****9998 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 1.9e-07
                 SSSS..EEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   9 GHss..vtslafspdgaw.lasGsdDgtvriWd 38 
                  H +  v+ laf+p +a  l+sGs Dgt+r+Wd
  KKY14363.1 184 EH-DrqVHKLAFNPFSAAkLLSGSQDGTLRLWD 215
                 35.357*****9999999788***********9 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 2.8e-05
                 EEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                  + t+ GH +sv+++++s    + +a ++d g+v +Wd
  KKY14363.1 230 SQSTFYGHaDSVRDVRWSTGDGFeFAFCTDSGSVQLWD 267
                 6889****888****777777777544778*******9 PP

  == domain 4  score: 26.7 bits;  conditional E-value: 1.2e-09
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +H +  ++l+++pdg+ +a+++ D++v+iWd
  KKY14363.1 279 NAHdKACYALDWHPDGRHVATAGLDKHVKIWD 310
                 58988899************9999*******9 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.047
                 TSSE....EEEEE..TTSEEEEEE CS
        WD40  21 dgaw....lasGs..dDgtvriWd 38 
                 +g+w    la++   +D  v++Wd
  KKY14363.1 347 SGDWqctqLATSYnqEDSRVHVWD 370
                 6777777799886556*******9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0016       9.3      10      66 ..     158     215 ..     147     221 .. 0.73
   2 ?    0.9   0.0     0.092   5.5e+02      38      68 ..     238     269 ..     228     273 .. 0.83
   3 !   11.1   0.0   6.1e-05      0.36      35      71 ..     279     315 ..     254     338 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0016
  ANAPC4_WD40  10 iAlatedgellvfRlngqrvwtleedkedsevrsLaWkp.dgklLavaysdgevrlld 66 
                  iA a ++g+++++ l   +v  l  +++d++v++La++p +   L  + +dg++rl d
   KKY14363.1 158 IATAASNGRIVIYDLTKPEVELLRVHEHDRQVHKLAFNPfSAAKLLSGSQDGTLRLWD 215
                  6777778888888888877777777888888888888873345578888888888876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.092
  ANAPC4_WD40  38 dsevrsLaWkp.dgklLavaysdgevrlldae 68 
                    +vr+++W+  dg  +a+ ++ g+v+l d  
   KKY14363.1 238 ADSVRDVRWSTgDGFEFAFCTDSGSVQLWDFR 269
                  5789*****85388889**********99976 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 6.1e-05
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  +++d+   +L W+pdg+  a a  d +v++ d  + +
   KKY14363.1 279 NAHDKACYALDWHPDGRHVATAGLDKHVKIWDLAKLD 315
                  67889999**********************9987654 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00027       1.6      61     133 ..     143     217 ..     132     235 .. 0.79
   2 !   13.0   0.0   1.1e-05     0.068     124     166 ..     260     305 ..     252     313 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00027
                 .EEEEEE-TTSS-EEEEESSSSCEEEEEECS...CEEEEEE.EEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETT CS
       eIF2A  61 pihdvaWspkskefaviyGkmpakvslfdlk...vkviskl.eeqkrNtiffspkgklvllaGfgnlaGeleiwdvk 133
                 p+ dv+Ws k+++  +    ++ +++++dl+   v+++    + ++   + f+p+    ll+G +   G+l +wd  
  KKY14363.1 143 PATDVKWSHKEHDTKIATAASNGRIVIYDLTkpeVELLRVHeHDRQVHKLAFNPFSAAKLLSGSQ--DGTLRLWDLR 217
                 678***************************656544433221345667899****9999999855..5888888875 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.1e-05
                 S-EEEEEETT..TTEEEE.EEE-TT--EEEE-TTSSEEEEEE-TTT CS
       eIF2A 124 aGeleiwdvk..kkkkia.kaeaanatlvewspdgryvlTattapr 166
                 +G++++wd    +  k+  +a+ + +  ++w+pdgr+v+Ta     
  KKY14363.1 260 SGSVQLWDFRnpSAPKMRiNAHDKACYALDWHPDGRHVATAGLDKH 305
                 69999**9996655566515566677889***********976544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:00.52
# Mc/sec: 4220.17
//
Query:       KKY14364.1  [L=537]
Description: putative mfs transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-29  101.2  18.1    3.4e-19   69.0   0.0    2.1  2  MFS_1           Major Facilitator Superfamily
     0.0059   16.7   3.2     0.0086   16.1   3.2    1.1  1  TFIIA           Transcription factor IIA, alpha/beta subunit
     0.0081   15.8   0.0      0.022   14.4   0.0    1.8  1  FAM176          FAM176 family
  ------ inclusion threshold ------
      0.078   12.1   0.3       0.11   11.6   0.3    1.1  1  Astro_capsid_p  Turkey astrovirus capsid protein
        3.2    5.9   5.8        4.6    5.4   5.8    1.1  1  CDC45           CDC45-like protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   9.6e-23   3.4e-19      55     235 ..       1     237 [.       1     244 [. 0.79
   2 !   32.0  16.4   1.7e-11     6e-08      17     188 ..     248     431 ..     243     482 .. 0.78

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 9.6e-23
       MFS_1  55 lsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslg... 149
                 +sdr+Gr+ ++l++l+++ ++++++ +++sl+++l +r+l G+g ++ + ++ +++a+++p+ + ++ra++l+ + +++G+ +gp +gg+la  +    
  KKY14364.1   1 MSDRYGRKYLVLTALTWTMITSIIFGMSHSLPAMLTARALGGAG-SGTVGIIRTMVAEMVPEkSLQPRAFSLMPLVWAVGSCFGPSFGGALANPARqyp 98 
                 79*******************66666878888************.6888888899******989****************************4444799 PP

       MFS_1 150 .............Wravfyilaivsllafv....lfllll.......................peepperkrkspkeee...................k 189
                              +    ++  +vs ++f+     ++l+l                       p+++p+++r++p++                     k
  KKY14364.1  99 gvfghssffrkwpF----LLPNLVSSIFFLvgltTGILFLketleakkhrkdyglilgnlvtsPCRKPRHPRNKPWQSIedsepllgeeangtevlntK 193
                 99999999977442....4333333333331211333555788999999999999999*999988888888888888889999****999999998744 PP

       MFS_1 190 gtgpaplvpawkallkdpvlwillialllfffgfsglltllplylq 235
                  +++ ++   ++ +l+++     l+a  + ++  +++ +llp++++
  KKY14364.1 194 NKKHLKAP-TFRDVLTPQSRV-NLVAYTMLAMHSQAFDQLLPIFMH 237
                 44444444.599*****9885.44444444468888*******965 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 1.7e-11
       MFS_1  17 palplalaedlgispseigllltlyalgaavaslpl.GrlsdrfGrrrvlllglllfalg.lllllfa.........sslw.lllvlrvlqGlgagalf 103
                 ++lp   a  +gi+   igll+t+y+++ ++ ++++  +++ ++G  r++ + +l+f    +l+++ +         + +  +l+++ + +G++a   f
  KKY14364.1 248 VTLPFKFAGGFGITSGRIGLLFTMYGVAGMLIQFLIfPPVAKKYGVLRCFKWVALTFPMVyALVPF-TsllptpftkQAFVfILMLVKCWCGIFA---F 342
                 5677777899*****************9999999999********999777777777777344444.2233333433223336666666777775...* PP

       MFS_1 104 pagaaliadwfpk.eergraigllsagfslGailgpllggllasslg.....Wravfyilaivsllafv.lfllllpeepperkrkspkeee 188
                 p + +l++  ++     g  +g++++++++G + gp l+g +   +g        +f++l+++sl a++ +  ++l e p  ++ + +++ee
  KKY14364.1 343 PCSTILLTNSASSlAILGTLNGVATSTSAVGRAAGPFLAGTVF-TFGvdvgyVITPFWLLTLISLCAAIpI--WYLKEMPGFSASDDSTDEE 431
                 ***********999**************************888.566577767778***********9955..9999988888877777765 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   3.2   2.4e-06    0.0086     316     362 ..     421     472 ..     390     475 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.4e-06
       TFIIA 316 lDGagddsdeeeeeeesdedsdsessdd.edeq....veEDplNSdDDvdde 362
                 +   +d++dee+ee e + ++ds+++++ +d++    v+E ++ SdDD dde
  KKY14364.1 421 FSASDDSTDEEDEEIEFEAEEDSTNEEQlNDHNkinaVNESAIDSDDDADDE 472
                 5555666666544444444455444444545447999*************97 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   6.2e-06     0.022      22      95 ..     381     455 ..     374     498 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.2e-06
      FAM176  22 aaLlFvlgvcvGLlltLcllviriscrkdlerlkkkkkklkeeseka..sededeeeeeeeedsseseaeeelsef 95 
                 a+ +F+ gv vG ++t + l++ is  + +     k+    + s+++  +ede+ e e ee++++e++ ++  +++
  KKY14364.1 381 AGTVFTFGVDVGYVITPFWLLTLISLCAAIPIWYLKEMPGFSASDDStdEEDEEIEFEAEEDSTNEEQLND-HNKI 455
                 7889*********************9998884443333333333322113333333333333333333333.2222 PP

>> Astro_capsid_p  Turkey astrovirus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   3.2e-05      0.11     202     266 ..     409     471 ..     379     479 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.2e-05
                     T-EEEEEEESS--XXXX....XXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Astro_capsid_p 202 avqllfemkttvpqeralaegederktgaeeeisdpsdeedeevsdeetdtevesdeDeddevdr 266
                     a+++ +    ++p  +a  +++de+  + e e  ++s +e++ ++++ +++  es+ D+dd++d+
      KKY14364.1 409 AIPIWYL--KEMPGFSASDDSTDEEDEEIEFEAEEDSTNEEQLNDHNKINAVNESAIDSDDDADD 471
                     5555443..45666666667777777788888888888888889999999999999999999986 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   5.8    0.0013       4.6     127     205 ..     416     491 ..     412     503 .. 0.39

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0013
       CDC45 127 eeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesddddersrkrrrsepsakklrrql 205
                 +e++  + +d++++eed++ e e ee++++ee+ +++++ +  +++     ++++d dde ++ r+ ++ s+++ ++q+
  KKY14364.1 416 KEMPGFSASDDSTDEEDEEIEFEAEEDSTNEEQLNDHNKINAVNES---AIDSDDDADDEIRSIRTGRTLSKEQHHEQR 491
                 5666666444444444444444444444333333333333222222...222222333333333333332333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1046  (0.0583412); expected 358.6 (0.02)
Passed bias filter:                      662  (0.0369234); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.35s 00:00:01.16 Elapsed: 00:00:00.54
# Mc/sec: 2971.14
//
Query:       KKY14398.1  [L=151]
Description: putative ribosome biogenesis protein rlp24 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-05   22.9   0.8    0.00017   21.8   0.8    1.7  1  Ribosomal_L24e  Ribosomal protein L24e
  ------ inclusion threshold ------
       0.11   12.7   0.5       0.15   12.3   0.5    1.2  1  PIN_2           PIN domain


Domain annotation for each model (and alignments):
>> Ribosomal_L24e  Ribosomal protein L24e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.8   1.8e-08   0.00017      42      64 ..       1      23 [.       1      25 [. 0.93

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.8e-08
                    TT--GGGSTTSTTT-XXXXXXXX CS
  Ribosomal_L24e 42 qkrnPrklkWTkayRrahkkelt 64
                    +kr+PrklkWTk+ R  ++ke+ 
      KKY14398.1  1 MKRQPRKLKWTKTHRALRGKEMI 23
                    79******************996 PP

>> PIN_2  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   1.7e-05      0.15       1      85 [.      23     113 ..      23     119 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.7e-05
       PIN_2   1 VvdaNivvsallksrikkrlilvekaleliapeeaveeiekhkealvkksklseeeleelle.....lletkikiveeslye.skikeAke 85 
                 +vd+  ++s+  k r    +   +  +  + + e veei+++ e ++ k++ls +++ e  +      +++ i++ +++l++ +++ +A  
  KKY14398.1  23 IVDSSLLLSQFAKRRNVPVKYDRNLVAATLKAMERVEEIRQRRERVLTKRRLSGKAAREKKRaedrrVVAEGIHLLGKELKAqEAEPSAIA 113
                 5777777777665333333333344444555667788**************998777666555566699999***9999998667777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.51
# Mc/sec: 887.08
//
Query:       KKY14399.1  [L=1179]
Description: hypothetical protein UCRPC4_g06758 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0019   18.2   5.7      0.013   15.6   1.7    2.9  3  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP
  ------ inclusion threshold ------
       0.35   10.9   5.5       0.29   11.1   0.9    2.4  2  FNIP_M           Folliculin-interacting protein middle domain
        3.3    8.0  11.5        2.4    8.5   8.1    2.3  2  Phasin_2         Phasin protein


Domain annotation for each model (and alignments):
>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.29   1.7e+03      47      83 ..     146     172 ..     122     186 .. 0.38
   2 !   15.6   1.7   2.2e-06     0.013      23      81 ..     181     239 ..     176     246 .. 0.82
   3 ?    3.3   0.0     0.013        78      26      76 ..     243     296 ..     240     304 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.29
  Baculo_PEP_C  47 LnalsedlksllaeldtrldtlltnLtdalnalqdtl 83 
                    +++ ++l+  l++ +++ ++ ++          +t 
    KKY14399.1 146 CKDIIDQLEVKLKDAQKEAQEKAQ----------ETA 172
                   222222222222222222221111..........111 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 2.2e-06
  Baculo_PEP_C  23 nairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqd 81 
                   +++ l +    a+ ++++d+i++++++l +d+k+l  + +++l++++++L++ + ++++
    KKY14399.1 181 ADLSLSQKIAEAAATKTFDKIQGKFDNLHKDVKELARNETKALKEQTEELDTMIDQVKT 239
                   55644444445888999***************************************983 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.013
  Baculo_PEP_C  26 rlqnvqilaqlat...lldaietqLnalsedlksllaeldtrldtlltnLtdal 76 
                   r+q + +l+ l+    ++d+ +++L++ ++++++++ ++++r++t+ + Lt+ l
    KKY14399.1 243 RAQHSMVLGRLEYhhyMKDTTARRLESRAQEMTDAMINVRQRFETAYNDLTSFL 296
                   566666777776422257899999999999*****************9999866 PP

>> FNIP_M  Folliculin-interacting protein middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.9   4.9e-05      0.29     116     183 ..      24     109 ..      12     111 .. 0.78
   2 ?    1.1   0.2     0.054   3.2e+02      55     119 ..     243     328 ..     198     350 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.9e-05
      FNIP_M 116 lleeldtkktnfFlstlltavLthhLaWvatvlpsdss..................ksksllekeeskk.veklakkhpynplwaQl 183
                 ll  l++++ ++++s+ll  +Lt  ++Wv + +  + +                  ks+ +l  e + k  e++a+  +yn+l+ Q+
  KKY14399.1  24 LLWMLSNEEVQYLISQLLFPLLTWPMTWVMNLAWYSVKrfickvfepthlgksslpKSHEYLALEARYKeFEQVAQ-ASYNKLIEQF 109
                 5667789999***********************9987788888888888888888755555555554441455554.5888888885 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.054
      FNIP_M  55 k...................aslkkksfvqrivealeefretlldly..taprleepvwlnlvssesekrqlaerfleelssllee 119
                 +                    + + +s  q +++a+ ++r+++   y   ++ l ep++ n++   +++ +  + +l +ls l+ e
  KKY14399.1 243 RaqhsmvlgrleyhhymkdtTARRLESRAQEMTDAMINVRQRFETAYndLTSFLDEPLYQNVIVGGNRRISESKALLGKLSALIAE 328
                 23333333333333333443333334444555555555555555555222455777877777777777777777777777777766 PP

>> Phasin_2  Phasin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   8.1   0.00041       2.4       1      96 [.     107     201 ..     107     205 .. 0.88
   2 ?    2.6   7.8     0.027   1.6e+02       3      74 ..     157     230 ..     156     246 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00041
    Phasin_2   1 eqfaaaakknlealealaslalegaeklaelqleaarasleeslaaakallsakdpq.ellelqselaqpalekavayarklaelaaktqeeaakla 96 
                 eqf   +k+  ++ e+++++a e +e+  ++ +ea+++s+ + +++++  ++ kd+q e+ e+ +e+a +++ k++a+    + +a ++++++++ +
  KKY14399.1 107 EQFEVKHKEIQKNTEESNRKAIERLEARHKKIQEATERSCKDIIDQLE--VKLKDAQkEAQEKAQETADKVVNKVTADLSLSQKIAEAAATKTFDKI 201
                 57777778888899**********************************..88888552777******************999999999999887655 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.027
    Phasin_2   3 faaaakknlealealaslalegaeklaelqleaarasleeslaaakallsa..kdpqellelqselaqpaleka 74 
                 +++a+k++ e ++++a ++++ + +  +l +++a+a++ ++++ ++  ++   kd++el++  ++ ++++ e++
  KKY14399.1 157 LKDAQKEAQEKAQETADKVVNKVTADLSLSQKIAEAAATKTFDKIQGKFDNlhKDVKELARNETKALKEQTEEL 230
                 789**********************************************9777*****************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2343  (0.130682); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.07u 0.31s 00:00:01.38 Elapsed: 00:00:00.49
# Mc/sec: 7176.10
//
Query:       KKY14400.1  [L=340]
Description: hypothetical protein UCRPC4_g06759 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-72  242.9   0.4    3.2e-72  242.6   0.4    1.1  1  Glyco_hydro_114  Glycoside-hydrolase family GH114


Domain annotation for each model (and alignments):
>> Glyco_hydro_114  Glycoside-hydrolase family GH114
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.6   0.4   1.8e-76   3.2e-72       1     232 []     104     335 ..     104     335 .. 0.97

  Alignments for each domain:
  == domain 1  score: 242.6 bits;  conditional E-value: 1.8e-76
  Glyco_hydro_114   1 twqyqlqgpletspdavdvydiDlfdtsaatiaalkakgkkviCYfsaGevedwrpdaddfnpasvlgkkldgWpgerwldirtaakrsskvrs 94 
                      +w+y l+  ++ s ++++v  +Dlfd  a  i+ l++kg kv+CYfsaG++e+wr+d+++f  +++lg++++gW+ge+++dir     s++vr+
       KKY14400.1 104 KWDYRLEYVSTASISGFNVLFLDLFDVGAIDITYLHQKGVKVVCYFSAGTAENWRSDYSSF-SKTDLGSSVSGWAGEKYVDIR-----STNVRN 191
                      6*****988888899999*******************************************.999******************.....9***** PP

  Glyco_hydro_114  95 imkaridlaaakGfdgvepDnvDsyesndtgflltaadqlayvkflaaeaharglaiglknageliselvdafdfavnEecaeyseCdtyepfi 188
                      im +r+++a+ k +dgv+pDnvDsy +n++g +lta d+++yv++la+ aharglaiglkna+ lis+ ++ ++++v+E+c+ +  C+ y+pfi
       KKY14400.1 192 IMIKRLNMAVTKKCDGVDPDNVDSY-ANKNGKSLTATDATSYVNYLADAAHARGLAIGLKNAPRLISNTISRMQWSVQEQCHDEGSCALYAPFI 284
                      *************************.8******************************************************************* PP

  Glyco_hydro_114 189 aagkpVfhiEYp.........vsaaedaaacaaasraagfstvvkdldLddkw 232
                      +a+kpVf++EYp          sa + a++c+ +s ++ fs ++k+ldL d+w
       KKY14400.1 285 KANKPVFNVEYPkgstsntvsISATKLAKYCK-DSTSKSFSIIIKNLDL-DNW 335
                      *******************99889999*****.99999***********.565 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 2125.59
//
Query:       KKY14401.1  [L=125]
Description: putative cytochrome c oxidase assembly protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-27   94.4   2.4    4.9e-27   94.0   2.4    1.1  1  Pet191_N  Cytochrome c oxidase assembly protein PET191
  ------ inclusion threshold ------
      0.011   15.7   3.7       0.39   10.8   0.6    2.3  2  CX9C      CHCH-CHCH-like Cx9C, IMS import disulfide relay-sys
      0.075   13.1   3.0        5.3    7.1   0.5    2.2  2  Cmc1      Cytochrome c oxidase biogenesis protein Cmc1 like


Domain annotation for each model (and alignments):
>> Pet191_N  Cytochrome c oxidase assembly protein PET191
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   2.4   8.1e-31   4.9e-27       2      67 .]       3      69 ..       2      69 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 8.1e-31
    Pet191_N  2 ksCkdlrealaeClqksdCvkkerktpkeClkek.aeelpeeCkqlrkayfeCkrgllDmrkRfrGn 67
                +sCk++r+ala+Clq+sdC++++r+ p eCl+ +  e+lp++C+ql ka+++Ckrg++DmrkRfrGn
  KKY14401.1  3 SSCKEIRAALAACLQESDCIMVQRHYPVECLSPPlLETLPTQCQQLSKALAQCKRGMVDMRKRFRGN 69
                79****************************************************************8 PP

>> CX9C  CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0023        14      26      42 ..       2      18 ..       1      19 [. 0.90
   2 ?   10.8   0.6   6.5e-05      0.39      18      42 ..      32      58 ..      30      60 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0023
        CX9C 26 pekCkeqkkeLakCiks 42
                p++Cke + +La C ++
  KKY14401.1  2 PSSCKEIRAALAACLQE 18
                789***********987 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 6.5e-05
        CX9C 18 Cvssn..qswpekCkeqkkeLakCiks 42
                C+s +  ++ p++C+++ k+La+C ++
  KKY14401.1 32 CLSPPllETLPTQCQQLSKALAQCKRG 58
                666665566799************776 PP

>> Cmc1  Cytochrome c oxidase biogenesis protein Cmc1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.5   0.00089       5.3      32      48 ..       2      18 ..       1      21 [. 0.85
   2 ?    6.4   0.1    0.0016       9.3      11      25 ..      43      57 ..      31      65 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00089
        Cmc1 32 vgkCneekeamkkClke 48
                   C+e++ a+ +Cl e
  KKY14401.1  2 PSSCKEIRAALAACLQE 18
                568***********987 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0016
        Cmc1 11 keCaelikalaeChk 25
                 +C++l kala+C +
  KKY14401.1 43 TQCQQLSKALAQCKR 57
                578888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 837.90
//
Query:       KKY14402.1  [L=394]
Description: putative dimeric dihydrodiol [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-15   55.9   0.1      1e-14   55.4   0.1    1.3  1  GFO_IDH_MocA   Oxidoreductase family, NAD-binding Rossmann fo
    0.00048   20.8   0.0    0.00073   20.2   0.0    1.2  1  NAD_binding_3  Homoserine dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.1   1.2e-18     1e-14       2     117 ..       8     139 ..       7     142 .. 0.78

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 1.2e-18
                   EEEEETTSHHHHHHHHHHHHTTTTE.......EEEEEECS.SHHHHHHHHHHTTHEEESS........HHHHHTCTTESEEEE-S-GGGHHHHHHHH CS
  GFO_IDH_MocA   2 rvaiiGaGkigskhlrplnesqrle.......evvalldp.daeraeavaesfgveaysd........leelladpeidavivatpngtheelakaa 82 
                   r++i  +G i++ + + l    ++         v+a+ ++ + e+a+++    +++  +         +++l++dp++d++++atp ++h++ ++ a
    KKY14402.1   8 RWGIMATGGIARTFTKDLLIDPKTRgttdivhIVTAVASSsSVESAKNFITDIVAPKQQAptclphgsYQDLVEDPNVDIIYIATPHSHHYQNCMLA 104
                   78888889998888888888866667776665444444330335555555555555444477888899***************************** PP

                   HHTT-EEEEESSS-SSHHHHHHHHHHHHHHTS-EE CS
  GFO_IDH_MocA  83 leagkhvllEKPlattveeakelvelaekkgklvs 117
                   l++gk+vl+EK ++ + ++ak+l+ la++k+  ++
    KKY14402.1 105 LQHGKAVLCEKAFTVNAAQAKKLYSLAREKNLFLM 139
                   *****************************997665 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   8.2e-08   0.00073       3     111 ..      15     135 ..      14     140 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 8.2e-08
                    SHHHHHHHHHHHH---S.....SEEEEEEEEESSEEE-TT........HHHHHT--CB---HHHHHHHHS-EEEEE-S--HHHHTTHHHHHHTTEE CS
  NAD_binding_3   3 GaiGsavleqlkrqqse.....ielelvavadrdsllskd........rkallasealtldlddliahldpdvvVEcasseavaelvlkaLkagkd 85 
                    G+i++++++ l+ ++++     i   + ava ++s +s++        +k++++++  + + +dl++++++d++  +++++   +    aL++gk 
     KKY14402.1  15 GGIARTFTKDLLIDPKTrgttdIVHIVTAVASSSSVESAKnfitdivaPKQQAPTCLPHGSYQDLVEDPNVDIIYIATPHSHHYQNCMLALQHGKA 110
                    999******99999999988776666778888885666557******************************************************9 PP

                    EE-S--CGGG.-HHHHHHHTSSSTTS- CS
  NAD_binding_3  86 vvtankgala.dealyeeLreaaeang 111
                    v+    +a++ + a+ ++L+++a++++
     KKY14402.1 111 VLC--EKAFTvNAAQAKKLYSLAREKN 135
                    875..56777799**********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2792.82
//
Query:       KKY14403.1  [L=2875]
Description: putative beige beach domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.6e-121  405.0   0.2   2.9e-121  404.1   0.0    1.6  2  Beach        Beige/BEACH domain
    2.4e-11   43.6   0.0    7.9e-11   41.9   0.0    2.0  1  PH_BEACH     PH domain associated with Beige/BEACH
    3.9e-10   40.1   0.0      8e-09   35.8   0.0    2.4  2  Laminin_G_3  Concanavalin A-like lectin/glucanases superfamil
    1.1e-05   26.0   4.4       0.55   11.2   0.0    5.2  5  WD40         WD domain, G-beta repeat
    0.00037   20.5   0.1     0.0044   17.1   0.0    2.8  3  eIF-5a       Eukaryotic elongation factor 5A hypusine, DNA-bi
     0.0014   17.9   0.1     0.0047   16.2   0.1    1.9  1  DUF4704      Domain of unknown function (DUF4704)


Domain annotation for each model (and alignments):
>> Beach  Beige/BEACH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       2.8   8.3e+03     109     154 ..     823     868 ..     818     876 .. 0.80
   2 !  404.1   0.0  9.8e-125  2.9e-121       2     276 .]    1940    2221 ..    1939    2221 .. 0.98

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 2.8
       Beach 109 telalelqsgkfdvadrlfksieeawesvtesesdvkEliPeffyl 154
                   +a + q+ +f++++ l   i + w  +++ +    E+ P f   
  KKY14403.1 823 EIFASQSQHSRFNAKRILRMRIVKKWLEALKGQPISTEILPAFMSA 868
                 5556678999999988888999999*99999999999999999755 PP

  == domain 2  score: 404.1 bits;  conditional E-value: 9.8e-125
       Beach    2 kWqkgeisnfeYLmalNtlagRsfndlsqYpvfPwvlkdyeseeldledektyRdLskpigalneerleklkeryeelee....eepkflygshyss 94  
                  kW+kgeisnf+YLm +Nt+agR+fndl+qYpvfPwvl+dy+seeldl+d+k++RdLskp+g++n+er++++++ry++ +e    + p+f+yg+hyss
  KKY14403.1 1940 KWMKGEISNFHYLMLINTMAGRTFNDLTQYPVFPWVLADYTSEELDLTDPKSFRDLSKPMGCQNPERESEYRDRYQSFAEmgdhNAPPFHYGTHYSS 2036
                  9****************************************************************************666677799*********** PP

       Beach   95 aaivlyylvRlePftelalelqsgkfdvadrlfksieeawesvte.sesdvkEliPeffylpefllnsnnldlglkq.e.ekvddVeLPpwakkspe 188 
                  a+iv++yl+Rl+Pf++  l lq+g+fd+adr+f si++aw+s+++ +++dv+EliPeffylpefl+n n++d+g++q + e +d VeLPpwak++p+
  KKY14403.1 2037 AMIVTSYLIRLQPFVKSYLLLQGGSFDHADRMFYSIAKAWNSASRiNMTDVRELIPEFFYLPEFLENMNKYDFGARQgStEPIDFVELPPWAKGDPK 2133
                  ********************************************6599**************************9996579**************** PP

       Beach  189 eFvrihreaLeseyvsenLheWIDliFGykqrgeeavkaknvfhpltyegevdlekiedeeekkaieaqikefGqtPkqlfkkphpkr 276 
                   F+ +hreaLes yvsenLh+WIDl+FG+kq+g++av+a nvfh+l+y+g+ dl++ied++e+ a+   i++fGqtP q+f kphp+r
  KKY14403.1 2134 IFIAKHREALESPYVSENLHKWIDLVFGFKQKGDAAVEAVNVFHHLSYQGAKDLDTIEDPMERLATIGIIHNFGQTPYQIFPKPHPAR 2221
                  **************************************************************************************87 PP

>> PH_BEACH  PH domain associated with Beige/BEACH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   2.7e-14   7.9e-11       7      94 ..    1771    1881 ..    1766    1887 .. 0.80

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 2.7e-14
    PH_BEACH    7 mkvvkGklsittkelvFtad.......................seeeeaseseeeseltadkkkkdkewklseikevhlrrYlLrktAlEiFladrt 80  
                  +++v+G l + +++++   +                        +  + +e++  +++t ++++++++wk +++  v +rr+l+r++AlEiF+ad++
  KKY14403.1 1771 LEAVEGLLILGKDHIYLIDNffqrgdgeivnvwqaseeerdqyVRMISGREASVRRSTTLNNEHETRSWKWDDVISVSKRRFLFRDVALEIFFADGR 1867
                  56778888888888888777888888888888888777666554444566777788899999*********************************** PP

    PH_BEACH   81 sllfnFeskkerrk 94  
                  s+l++  +   r++
  KKY14403.1 1868 SYLLTVMTPTLRDS 1881
                  ****9876666665 PP

>> Laminin_G_3  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   2.7e-12     8e-09      12     132 ..     372     497 ..     364     506 .. 0.74
   2 ?    1.0   0.0      0.14   4.2e+02      14      78 ..    1606    1672 ..    1598    1680 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 2.7e-12
  Laminin_G_3  12 aslptssfTvsaWvkpdslpsaaqiiis.sssdg.rgfelgl.dgsg.rlrfsvnagngaeesvt.sgasvpageWtHvavtyd......ggtlrlYv 98 
                  ++l ts++T+s+Wvk+ds +++++++++ ++++    f l + + ++ +l ++++  ++ + sv+  +  +++g+W+Hv +++       +++++l v
   KKY14403.1 372 PPLHTSGYTLSMWVKFDSFDTDTHTTLFgAFDASqACFLLAYlEKDTrNLILQTSIRGTRP-SVRfRSFVFEPGRWYHVSIVHRrprttsSSKASLLV 468
                  56889***************99999777644444336666664544457777666665444.555488999**************98876666***** PP

  Laminin_G_3  99 NGvevgsatltggllsatsgplviGrdpggddpf 132
                  +G+  ++++l  +     ++p +iG++    + f
   KKY14403.1 469 DGEFYEQQKLRYP-----DPPPTIGNRDARVQAF 497
                  ***9999976555.....4566777776555555 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.14
  Laminin_G_3   14 lptssfTvsaWvkpdslpsaaqiiissssdgrgfelgldgsg.....rlrfsvnagngaeesvtsgasvp 78  
                    ++s+f vs ++ ++   ++ + +i  ++ + +f+ +ld++      rlr+  + ++g+e+++ s+++v+
   KKY14403.1 1606 QDNSAFAVSSFMQLKREAERPNGFI--AKPT-EFRWRLDQTEgrnrmRLRIVADVDTGQEQAYLSKRKVS 1672
                   4699****************99***..9889.99999865555676777777777788888888888776 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.6   4.7e+03      24      38 .]    2284    2295 ..    2251    2295 .. 0.72
   2 !    7.8   0.2    0.0022       6.7       7      37 ..    2301    2336 ..    2298    2337 .. 0.61
   3 !   11.2   0.0   0.00018      0.55       7      38 .]    2353    2385 ..    2348    2385 .. 0.82
   4 ?   -0.5   0.1      0.94   2.8e+03       3      31 ..    2391    2419 ..    2389    2423 .. 0.73
   5 ?    3.4   0.0     0.054   1.6e+02      15      38 .]    2460    2475 ..    2439    2475 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.6
                  EEEEE.ETTSEEEEEE CS
        WD40   24 wlasG.sdDgtvriWd 38  
                  w   G s Dg+vr+++
  KKY14403.1 2284 W---GfS-DGSVRFYN 2295
                  4...745.*****997 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0022
                  EESS.SS..EEEEE..EETTSSEEEEEETTSEEEEE CS
        WD40    7 ltGH.ss..vtsla..fspdgawlasGsdDgtvriW 37  
                  l GH  +  +  l+     d++ l++++ D+tv +W
  KKY14403.1 2301 LIGHaEHlhIGQLStaLFVDSRTLITSGTDCTVSVW 2336
                  56775556664444553555555555544******* PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00018
                  EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38  
                  + GH ++vt la s++   l+s+s Dg +++Wd
  KKY14403.1 2353 FFGHrTPVTVLALSRSFGTLLSASTDGEIMLWD 2385
                  459*999999986777777778888*******9 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.94
                  EEEEEESSSS.....EEEEEEETTSSEEEEEETT CS
        WD40    3 clrtltGHss.....vtslafspdgawlasGsdD 31  
                  ++r+l++H++     ++++     g+ +++++  
  KKY14403.1 2391 HVRKLDAHCGlecarINDV----TGSIVLCCG-S 2419
                  689999**66566777777....889988776.5 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.054
                  EEEEETTSSEEEEEETTSEEEEEE CS
        WD40   15 slafspdgawlasGsdDgtvriWd 38  
                  ++        l++G+ +g v++W+
  KKY14403.1 2460 DI--------LFTGHAKGVVKVWS 2475
                  34........89***********5 PP

>> eIF-5a  Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.89   2.7e+03      43      63 ..    1789    1809 ..    1787    1810 .. 0.83
   2 ?   -2.4   0.0       1.7   5.2e+03      45      59 ..    2324    2338 ..    2321    2343 .. 0.84
   3 !   17.1   0.0   1.5e-06    0.0044       5      69 .]    2803    2868 ..    2802    2868 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.89
                  HTT--TT-E..EEEEEETTEE CS
      eIF-5a   43 kekfeegkdvlVtVlsamGee 63  
                   + f+ g+  +V+V++a  ee
  KKY14403.1 1789 DNFFQRGDGEIVNVWQASEEE 1809
                  5668999999*******9988 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.7
                  T--TT-E..EEEEEE CS
      eIF-5a   45 kfeegkdvlVtVlsa 59  
                    ++g+d+ V+V++ 
  KKY14403.1 2324 LITSGTDCTVSVWTL 2338
                  5689*********85 PP

  == domain 3  score: 17.1 bits;  conditional E-value: 1.5e-06
                  EEEEEEEE-SS.EEEEEETT--EEE.EEGG...GB-HHHHTT--TT.-E..EEEEEETTEEEEEEE- CS
      eIF-5a    5 keyqLidIqdDgflsLmdddgetkeDlklpeg.elgkqikekfeeg.kdvlVtVlsamGeekiiavK 69  
                  k+y ++d  dDg l+ m+++g++k  l++ e+  l  +i ++f++g  +v   V++  G+e ++++K
  KKY14403.1 2803 KQYRILDL-DDGCLTAMTETGDVKSGLPVIEQgGLYSKISRAFNDGrGSVRALVINDGGRELVVDYK 2868
                  6899****.8***************99999555************9678888899999999999887 PP

>> DUF4704  Domain of unknown function (DUF4704)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.6e-06    0.0047      59     180 ..     707     849 ..     695     884 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.6e-06
     DUF4704  59 atllsliaelleasstnqqqlvqtkGflvlaflLqkvspkhLtr...................evleallslakvlkelnssaskvLlrd..lldkvlf 136
                 ++ +++++e+++++ +n + + +++G  +la+ L+    ++ +                     +l+++l+++ +    ++  +k+Ll++  ++  +l+
  KKY14403.1 707 IQAVRIMFEMVKDNWRNSEAVEKENGYGILATTLRCKLLSNSNGprtgpplsistegrsklfkGLLDVILEFIGYDC--EQP-QKSLLNNplAYRTLLV 802
                 5568999***************************9998888888999999999*9*999777777777777777766..443.3555554224678*** PP

     DUF4704 137 npklWiyadveVQkkLyqfL...atefledesilknvrrvstvlrll 180
                 +  +W +ad+eVQ+  y++    a++  ++  + k + r+  v + l
  KKY14403.1 803 DSDMWRQADLEVQTLYYKQFeifASQSQHSRFNAKRILRMRIVKKWL 849
                 *************9888765111333333333344444445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2875 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.14u 0.33s 00:00:01.47 Elapsed: 00:00:00.54
# Mc/sec: 16116.80
//
Query:       KKY14404.1  [L=488]
Description: putative autophagic serine protease alp2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-35  123.2  13.7    2.2e-35  122.4  13.7    1.4  1  Peptidase_S8  Subtilase family
    5.4e-21   75.0   0.1    1.1e-20   74.0   0.1    1.6  1  Inhibitor_I9  Peptidase inhibitor I9


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4  13.7   2.4e-39   2.2e-35       8     282 ..     181     423 ..     174     458 .. 0.86

  Alignments for each domain:
  == domain 1  score: 122.4 bits;  conditional E-value: 2.4e-39
                   EECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-SSTTSB-H CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   8 vlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvldtsggsm 104
                   v+DtG + +h+d++                    ++a   +t++ +++d +gn   HGth+ G++a++      k gva +a +++vkvl  +g+ +
    KKY14404.1 181 VIDTGTNVDHVDFE--------------------GRAHWGKTIPTNDEDADGNG--HGTHCSGTVAGK------KFGVAKKANVYAVKVLRSNGSGS 249
                   89999999999988....................56666777777777777765..************......99**************8888776 PP

                   H..HHHHHHHHHHHHCT-S...............EEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTT CS
                   xxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 105 etgteliraieeaaedkvd...............vinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstskn 186
                      +++++++e+aae++                 v nmslg + +  +t +    la+n+av + g+ + ++aGN++       a s  ++p+ ++n
    KKY14404.1 250 M--SDVVKGVEWAAESHSTkvaamkkkgkkfkgsVANMSLG-GGKS-TTLD----LAVNAAV-DAGIHFAVAAGNDN-------ADSCNYSPAAAEN 330
                   4..9***********777779********************.3332.2332....399****.99************.......5566689999*** PP

                   CEEEEEESTTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT.........--HHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxx RF
  Peptidase_S8 187 vitvgayttegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpk.........ltpetvr 274
                   +itvga t +++ a+fS++G++       di apG ni stw   +        ++ +sGTSmAsP++ag +A  ls  p+         +tp++++
    KKY14404.1 331 AITVGASTLADERAYFSNYGKCN------DIFAPGLNIQSTWIGSK------YATNVISGTSMASPHIAGLLAYFLSLQPAsssaysvgdITPKKMK 415
                   **********************9......6************9999......33789***********************99999999998999999 PP

                   HHHHCCS- CS
                   xxxxxxxx RF
  Peptidase_S8 275 aallntAq 282
                   a ++  A+
    KKY14404.1 416 ANMIAVAT 423
                   98888775 PP

>> Inhibitor_I9  Peptidase inhibitor I9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.1   1.2e-24   1.1e-20       1      81 [.      44     137 ..      44     138 .. 0.91

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 1.2e-24
                   EEEEEE-TTS-HHHHHHHHHHHHH....H........HHHTT........--EEEEEEESS..SSSEEEEEE-GGGHHHHHTSTTEEEEEEEEEEEE CS
  Inhibitor_I9   1 vYIVtfkeaakaakkassheswhqsllks........vlkge......dsakagilysYki..lfnGfavklteeqaeklrkrpeVesVepDqsvrl 81 
                   +YIV+fk++++++  as+h+sw+q+++           +  +      d  + g++++Y+i  ++ G++++++++++e++r++p+Ve+Ve+Dq+v++
    KKY14404.1  44 SYIVVFKKHVSHKG-ASAHHSWVQDVHMDaenqrtelRK--RgqfpfqDTIFGGLKHTYNIagGLLGYSGHFDDNVIEQIRRHPDVEYVERDQEVHT 137
                   6*********9999.*********998888878875433..356999999*********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.54
# Mc/sec: 2710.98
//
Query:       KKY14405.1  [L=665]
Description: putative nad binding rossmann fold [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-20   73.2   0.0    6.6e-20   72.1   0.0    1.6  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
    2.4e-11   44.6   0.0    6.6e-11   43.2   0.0    1.7  1  Methyltransf_24  Methyltransferase domain
    1.6e-09   37.3   0.0    2.9e-09   36.4   0.0    1.3  1  Methyltransf_3   O-methyltransferase
    3.2e-09   36.8   0.0    6.7e-09   35.8   0.0    1.5  1  GFO_IDH_MocA_C   Oxidoreductase family, C-terminal alpha/beta
    5.4e-07   30.3   0.1    1.3e-06   29.0   0.1    1.6  1  NAD_binding_3    Homoserine dehydrogenase, NAD binding domain
     0.0012   19.4   0.1     0.0041   17.6   0.0    1.9  2  CoA_binding_2    CoA binding domain
  ------ inclusion threshold ------
      0.072   13.8   0.3       0.92   10.2   0.0    2.5  3  CoA_binding      CoA binding domain
       0.12   11.3   0.0       0.18   10.7   0.0    1.2  1  OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin famil


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0     3e-23   6.6e-20       5     119 ..     300     415 ..     296     416 .. 0.92

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 3e-23
                   EETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT.THEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-SSHH CS
  GFO_IDH_MocA   5 iiGaGkigskhlrplnesqrleevvalldpdaeraeavaesf.gveaysdleelladpeidavivatpngtheelakaaleagkhvllEKPlattve 100
                   + G+G  ++ ++ p+    ++ ++ al+++++ +  +  + f gv++y ++++l+adp++d+v+v+t +++h++l+k+aleagkhvl+EKP++ t +
    KKY14405.1 300 VGGYGLSAKIFHIPFVTVVPEFKLYALVQRRPTADNDSEKDFpGVKSYRSVDDLVADPQVDLVVVTTTPDSHYALVKQALEAGKHVLVEKPFTPTST 396
                   5677888777777999999*****************9966554999*************************************************** PP

                   HHHHHHHHHHHHTS-EEEE CS
  GFO_IDH_MocA 101 eakelvelaekkgklvsvg 119
                   ea  l++la++k+ +++v 
    KKY14405.1 397 EAYSLATLAASKSLTLTVY 415
                   *************999985 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0     3e-14   6.6e-11       1      93 [.      91     186 ..      91     191 .. 0.94

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 3e-14
  Methyltransf_24   1 vEiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalare....aglddrvrlikadseealasla....agsiDllfiDgghaaeavle 86 
                      vE+G y+G+s++++++a+r+ g +r+++++ +p   e+aa++++    agl+d+v++ +++s+  la+l+      +iD+lfiD  h + a+ +
       KKY14405.1  91 VELGGYCGYSAILFGDAFRKSGGNRYYSLERNP---EFAAVVKSlvdlAGLSDVVKVEVGPSDLSLARLNqsgiINKIDFLFID--HYKPAYTA 179
                      8********************************...999999999999**********************9999788*******..89999999 PP

  Methyltransf_24  87 dleallp 93 
                      d++++ p
       KKY14405.1 180 DIKLCNP 186
                      9988765 PP

>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   1.3e-12   2.9e-09      14     137 ..      56     178 ..      48     184 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 1.3e-12
                     HHHHHHTTTST.TGGGS--HHHHHHHHHHHHHHT--EEEEE--TTSHHHHHHHTTS-TT-..EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES CS
  Methyltransf_3  14 keLreatakktdlsemevsvdegqfLslLvklvnakrvleiGvftGyslLatalalPeDG..kilaididreayeialkfiqkagvaekielieg 106
                     + + + + k++    m+v++d+g+ +  L+  +    ++e+G + Gys++    a+ + G  +  +++ ++e +++ +++++ ag+ + +++ +g
      KKY14405.1  56 EAISKYAEKHY---LMNVGPDKGKVVVDLILSSRPETMVELGGYCGYSAILFGDAFRKSGgnRYYSLERNPEFAAVVKSLVDLAGLSDVVKVEVG 147
                     55556666666...8***********99999999999**************99999988766899****************************** PP

                     -HHHHHHHHHTSSS---EEEEEE-S-GGGHH CS
  Methyltransf_3 107 dalkvLeelvkdkklpefDfifvDaDkssyv 137
                     ++   L +l +    ++ Df+f+D  k +y+
      KKY14405.1 148 PSDLSLARLNQSGIINKIDFLFIDHYKPAYT 178
                     *************************999996 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0     3e-12   6.7e-09       3      90 ..     430     518 ..     428     543 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 3e-12
                     HHHTTTTSSEEEEEEEEECBEEECHHHHCCGGSH....HCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.SEEESCTCCSCSEEEEEEEE CS
  GFO_IDH_MocA_C   3 lIengklGevvsvdvwtldtragaeakkrwkrrk....kksgGvlgdlgiHdiDllqwLfGqppsvvaalgrmrqnaeaaededaavmsvln 90 
                     l+++ +lG++  ++++++++r++a+    +++       +++Gv++dlg+H iD+  +LfG p++ +a ++  ++ ae+++ ed+a+ ++l+
      KKY14405.1 430 LLNDSQLGRIAEFETHFDRHRPAAPVAQLESNYWkavpGPGHGVAYDLGTHLIDQCVVLFGFPSRITATIY--SNRAETPDFEDTAT-ILLH 518
                     566666*****************9998876532245679*****************************998..67777777777774.4444 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1   5.9e-10   1.3e-06      21      88 ..     320     387 ..     315     410 .. 0.94

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 5.9e-10
                    EEEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-S--HHHHTTHHHHHHTTEEEE- CS
  NAD_binding_3  21 elelvavadrdsllskdrkallasealtldlddliahldpdvvVEcasseavaelvlkaLkagkdvvt 88 
                    e++l+a+++r++ +++d +++++  + + ++ddl+a++++d+vV  + +++   lv +aL+agk+v++
     KKY14405.1 320 EFKLYALVQRRPTADNDSEKDFPGVKSYRSVDDLVADPQVDLVVVTTTPDSHYALVKQALEAGKHVLV 387
                    58999******999999*************************************************97 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.8e-06    0.0041      37      86 ..     338     389 ..     332     418 .. 0.77
   2 ?   -2.5   0.0       3.1   6.8e+03      44      72 ..     633     659 ..     618     660 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.8e-06
                    -SEETTEES----T......T--EEEE-S-HHHHGGGHHHHHHH--SEEEE- CS
  CoA_binding_2  37 eeeilgekvyaslae.d.pepvdlvdvftppeatpeivkealalgakavwlq 86 
                    e+   g+k+y+s+++   + +vdlv+v t p+   ++vk+al++g  +++  
     KKY14405.1 338 EKDFPGVKSYRSVDDlVaDPQVDLVVVTTTPDSHYALVKQALEAGKHVLVEK 389
                    5677799*******865899***********************997766644 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.1
                    ES----T....T--EEEE-S-HHHHGGGH CS
  CoA_binding_2  44 kvyaslaedpepvdlvdvftppeatpeiv 72 
                    +v +++a   +++ lv +++ ++++ +++
     KKY14405.1 633 PVDPKVA--AGVIRLVELARESSKLGKTL 659
                    3555555..47888888888888776665 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00041      0.92      39      90 ..     335     386 ..     322     388 .. 0.86
   2 ?   -2.7   0.0       4.5     1e+04      20      45 ..     580     605 ..     578     607 .. 0.85
   3 ?    0.1   0.0      0.58   1.3e+03      33      67 ..     631     665 .]     616     665 .] 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00041
                  TTTTCEETTEEEESCHHHHHHHCTTTEEEEES-HHHHHHHHHHHHHTT-SEE CS
  CoA_binding  39 rkvgtevlglpvyksvdeleektevdvavitvPaesaqeavdelveagikgi 90 
                  ++  ++  g++ y svd+l+++ +vd  v+t+ ++s ++ v++++eag  + 
   KKY14405.1 335 NDSEKDFPGVKSYRSVDDLVADPQVDLVVVTTTPDSHYALVKQALEAGKHVL 386
                  5555667799************88***********************98765 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.5
                  HHHHHHHHECEEEEEEC-TTTTTCEE CS
  CoA_binding  20 yhfkeklkygikavfgvnprkvgtev 45 
                  y f+ k +yg+ + f+ + +k++tev
   KKY14405.1 580 YGFEPKARYGVLHKFDSGSGKISTEV 605
                  56777889999999**9999999987 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.58
                  EEEC-TTTTTCEETTEEEESCHHHHHHHCTTTEEE CS
  CoA_binding  33 vfgvnprkvgtevlglpvyksvdeleektevdvav 67 
                   ++v+p+ ++  ++ ++   + ++l ++++vdv++
   KKY14405.1 631 QIPVDPKVAAGVIRLVELARESSKLGKTLDVDVTI 665
                  5899************************9999987 PP

>> OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.2e-05      0.18     180     220 ..     343     386 ..     294     401 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.2e-05
                      T-EEECSCHHHHTTSS...EEEE----SS-SB-GGGS-TT-EEE CS
  OCD_Mu_crystall 180 evsackseeeavegad...ivvtvTaakapilkaewvkpGahin 220
                       v+   s+ + v++ +   +vvt+T++ +  l+++ +++G h++
       KKY14405.1 343 GVKSYRSVDDLVADPQvdlVVVTTTPDSHYALVKQALEAGKHVL 386
                      5888889999999876334699********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.51
# Mc/sec: 3901.87
//
Query:       KKY14406.1  [L=496]
Description: putative catechol o-methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00026   20.5   0.1     0.0004   19.9   0.1    1.3  1  adh_short  short chain dehydrogenase
  ------ inclusion threshold ------
      0.017   14.2   0.0      0.025   13.6   0.0    1.2  1  Vps16_C    Vps16, C-terminal region


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   4.5e-08    0.0004       1     117 [.      53     175 ..      53     185 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4.5e-08
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHH..SSESEEEE---S....S--S CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee..gakalaiqvDvtdreevealvekavkkl..gkldvLvnNAGi....tgsg 91 
                 k++lvtG s   G++ia+ +++ G +v+ +d +  ++ +v    k++    ++   ++D + ++ ++ l +     +  +k+d+ +n+A+i    +  +
  KKY14406.1  53 KTILVTGVSTTHGLQIARIFYETGHEVIGADLERFRVPAVGRMSKALkvFYRLERPTGDTEAATYIKILTDV----VlrEKVDLWINCASIstavEDAQ 147
                 79**********************************999998888873223334444555544444444444....2458***********87755555 PP

                 SGGGCSHHHHHHHHHHHT..HHHHHHHH CS
   adh_short  92 pfselseeewervievNl..tgvflltr 117
                 + + ++ ++  r+i+ N+  t++++ t+
  KKY14406.1 148 AREVIERKTACRCIQWNVetTSILNHTE 175
                 5555666668899988872245555555 PP

>> Vps16_C  Vps16, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.8e-06     0.025     252     289 ..     112     149 ..     102     178 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.8e-06
     Vps16_C 252 keAkkYipritglstqekvklyvevgdvkeAielAake 289
                 +eA+ Yi+ +t++   ekv+l++++  +  A+e A  +
  KKY14406.1 112 TEAATYIKILTDVVLREKVDLWINCASISTAVEDAQAR 149
                 69*******************************99653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.52
# Mc/sec: 2872.47
//
Query:       KKY14407.1  [L=628]
Description: putative atp-binding cassette sub-family f member 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-49  165.5   0.2    4.7e-24   85.4   0.0    3.1  3  ABC_tran         ABC transporter
    1.1e-21   76.7   4.7    1.1e-21   76.7   4.7    3.1  3  ABC_tran_Xtn     ABC transporter
    1.1e-17   64.9   0.4     0.0012   18.7   0.1    4.3  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    6.8e-10   38.8   0.2      0.042   13.3   0.1    4.5  3  SMC_N            RecF/RecN/SMC N terminal domain
    2.6e-08   34.0   0.0       0.01   15.6   0.0    3.1  3  AAA_15           AAA ATPase domain
    2.6e-08   33.5   0.1     0.0028   17.4   0.1    2.5  2  AAA_29           P-loop containing region of AAA domain
    6.5e-08   33.3   6.1      0.031   14.8   0.0    3.7  3  AAA_23           AAA domain
    2.7e-07   30.7   0.9    0.00078   19.4   0.1    3.0  3  RsgA_GTPase      RsgA GTPase
    3.5e-06   27.6   0.8      0.087   13.4   0.0    3.4  3  AAA_18           AAA domain
    1.4e-05   25.6   0.0       0.13   12.7   0.0    2.5  2  AAA_16           AAA ATPase domain
    1.4e-05   25.1   0.0      0.025   14.7   0.0    3.2  2  MMR_HSR1         50S ribosome-binding GTPase
    1.7e-05   25.1   0.0     0.0065   16.7   0.0    2.4  2  AAA_28           AAA domain
    3.2e-05   23.6   0.0       0.05   13.2   0.0    2.8  2  AAA_27           AAA domain
    0.00011   22.5   0.0       0.19   12.0   0.0    2.7  2  AAA_22           AAA domain
    0.00014   21.8   0.1       0.72    9.8   0.0    2.7  2  NACHT            NACHT domain
    0.00039   20.8   0.0       0.63   10.5   0.0    3.0  2  AAA              ATPase family associated with various cellul
    0.00046   20.5   2.1          2    8.8   0.1    3.5  3  RNA_helicase     RNA helicase
     0.0008   18.7   0.0        2.9    7.0   0.0    3.3  3  NB-ARC           NB-ARC domain
     0.0016   18.2   0.5        2.6    7.7   0.0    3.5  3  AAA_24           AAA domain
     0.0026   17.8   0.1        2.7    8.0   0.1    2.5  2  AAA_5            AAA domain (dynein-related subfamily)
     0.0039   17.4   0.1        2.4    8.4   0.1    3.1  2  Roc              Ras of Complex, Roc, domain of DAPkinase
     0.0072   16.4   0.1        6.5    6.8   0.0    2.9  2  AAA_14           AAA domain
     0.0085   16.5   0.0        2.3    8.6   0.0    2.8  2  AAA_17           AAA domain
     0.0091   15.9   0.0          6    6.8   0.0    2.6  2  Rad17            Rad17 P-loop domain
  ------ inclusion threshold ------
      0.015   14.5   0.5        2.6    7.2   0.0    2.7  3  DUF2813          Protein of unknown function (DUF2813)
      0.024   13.8   0.0        1.8    7.7   0.0    2.6  2  DUF815           Protein of unknown function (DUF815)
      0.027   13.3   0.1         18    4.0   0.0    3.4  3  ABC_ATPase       Predicted ATPase of the ABC class
       0.03   14.1   0.4        5.4    6.7   0.1    3.4  3  AAA_30           AAA domain
       0.03   13.8   0.0        1.5    8.3   0.0    2.6  2  AAA_7            P-loop containing dynein motor region
      0.033   14.1   0.1        8.1    6.3   0.0    2.9  3  ATPase_2         ATPase domain predominantly from Archaea
      0.035   13.2   0.1        3.2    6.8   0.0    2.3  2  MCM              MCM P-loop domain
      0.038   13.5   0.3        1.6    8.3   0.0    3.2  3  AAA_25           AAA domain
      0.047   13.8   3.6       0.98    9.6   0.1    3.3  3  AAA_33           AAA domain
       0.11   12.3   0.5        6.3    6.5   0.0    3.0  3  PduV-EutP        Ethanolamine utilisation - propanediol utili
       0.13   11.4   1.2        6.5    5.8   0.0    2.9  3  DAP3             Mitochondrial ribosomal death-associated pro
       0.14   11.7   0.1         12    5.4   0.0    3.0  3  FeoB_N           Ferrous iron transport protein B
       0.19   12.1   2.3       0.95    9.8   1.1    2.6  2  UvsY             Recombination, repair and ssDNA binding prot
       0.47   10.4   2.0        8.2    6.3   0.1    2.9  3  NTPase_1         NTPase
        3.1    8.2   4.6        2.5    8.6   0.1    2.4  2  ATP19            ATP synthase subunit K


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1         7   3.2e+03      59     101 ..      40      82 ..      12      99 .. 0.55
   2 !   76.5   0.0   6.1e-24   2.8e-21       3     137 .]     113     269 ..     111     269 .. 0.69
   3 !   85.4   0.0     1e-26   4.7e-24       2     137 .]     426     558 ..     425     558 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 7
                 HCEEEE-SS--S-TTSBHHHH.HHHTCHHHHHHHSTTGGTTCBG CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  59 keigvlpqepqlfpeltvren.esdeeiekalsklglkelkdtv 101
                 ++ + +  ++ l++e  +++n e+ ++++++ ++l+ ++l d+v
  KKY14407.1  40 SSASSVNGDEPLDDED-IATNaEKMDKVKDLTAQLDKHGLSDRV 82 
                 2222222332333333.233356666777777777777766665 PP

  == domain 2  score: 76.5 bits;  conditional E-value: 6.1e-24
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET..TCEGGG.......B-HHHCCHCEEEE-SS....--S-TTSBHHHH......... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx.......xxxxxxxxxxxxxxxx....xxxxxxxxxxxx......... RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilld..gkdlke.......qeleslrkeigvlpqe....pqlfpeltvren......... 79 
                 + +l+l+  ++++++GenG+GKStLlk++ + + p  ++i +   ++  ++                  v+ q     ++l+++ +   +         
  KKY14407.1 113 DTTLELNYARRYGLLGENGCGKSTLLKAIDKREYPIPEHIDIYllNEGAEKsdfgaldW----------VVNQAekemDRLDRQAE---Eilekdgpes 198
                 67899**********************************94442122222211222222..........22222111222222222...1333366666 PP

                 ................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                                 +   +++ +l+ lg   +++t+++++++ +SgG++ rvala+al+ kp+llllD+pta
  KKY14407.1 199 pvlldiydrmegmdpsTFHTRASLILTGLG---FNKTTIQKKTKDMSGGWRMRVALAKALFVKPSLLLLDDPTA 269
                 677777666666665555566666666666...66799999*******************************97 PP

  == domain 3  score: 85.4 bits;  conditional E-value: 1e-26
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHHTCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.........esdeeiekalsk 91 
                 +n+++ +  ++++a+vG+nG GKStLl++++g+l+pt+G++            ++++ ++g+++q++  + +lt             e++++ + ++++
  KKY14407.1 426 ENLDFGVDMDSRTALVGPNGVGKSTLLRIMTGKLSPTSGSV-----------SRHTHLKLGMYSQHSAEQLDLTKS-AldfvrdkypEKSQDYQYWRQQ 512
                 799**************************************...........678999999999995555555322.23558899*999999******* PP

                 STTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  92 lglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 lg  +l  + ++  + +LS+Gq++rv+ a + ++ p++lllDEpt+
  KKY14407.1 513 LGRYGLSGESQTALMGTLSEGQRSRVVFALLAIESPNMLLLDEPTN 558
                 **********99999******************************8 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       9.3   4.3e+03      59      74 ..     175     187 ..     172     198 .. 0.49
   2 !   76.7   4.7   2.3e-24   1.1e-21       1      73 [.     308     383 ..     308     395 .. 0.90
   3 ?   -1.0   0.0       4.1   1.9e+03      13      25 ..     612     624 ..     599     627 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 9.3
  ABC_tran_Xtn  59 qaqsrekaLeklekie 74 
                   qa+  + +L++    +
    KKY14407.1 175 QAEKEMDRLDRQ---A 187
                   444444444444...2 PP

  == domain 2  score: 76.7 bits;  conditional E-value: 2.3e-24
  ABC_tran_Xtn   1 velengklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLeklek...i 73 
                   +++++++l +Y GnY++y++++ e++ +q+kay kqq+ei+++++fI+  +  a+  +qa+sr+k L+k+e    i
    KKY14407.1 308 IDMRQKQLIYYGGNYDSYVKTRSENETNQMKAYNKQQEEIQHIKKFIASAGTYANLVRQAKSRQKILDKMEAdgfI 383
                   58999*****************************************************************974544 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 4.1
  ABC_tran_Xtn  13 GnYseyleekeer 25 
                   G Y++yl++k  +
    KKY14407.1 612 GEYKNYLRKKMIN 624
                   6899999999766 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.1e-05    0.0053       3      55 ..     125     163 ..     124     182 .. 0.76
   2 !    9.1   0.0    0.0023         1     246     302 ..     250     300 ..     240     301 .. 0.78
   3 !   18.7   0.1   2.6e-06    0.0012       2      19 ..     438     455 ..     437     465 .. 0.91
   4 !   15.0   0.0   3.5e-05     0.016     225     302 ..     518     589 ..     477     590 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.1e-05
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpe 55 
                 +l G Ng+GKS+LL+a+              d++    ++ ++++ll++++++
  KKY14407.1 125 GLLGENGCGKSTLLKAI--------------DKREYPIPEHIDIYLLNEGAEK 163
                 699**************..............4555555555555555555555 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0023
      AAA_21 246 alltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSplll 302
                 al+ al+  +   slll+D+p ++L+ ++   l    ++l++++  ++l++HS  +l
  KKY14407.1 250 ALAKALFVKP---SLLLLDDPTAHLDLEACVWLE---EYLKKWDKTLVLVSHSMDFL 300
                 7777777766...**************5544444...66688999*******97766 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 2.6e-06
      AAA_21   2 nvliGpNgsGKSnLLdal 19 
                 ++l+GpNg+GKS+LL+++
  KKY14407.1 438 TALVGPNGVGKSTLLRIM 455
                 89**************98 PP

  == domain 4  score: 15.0 bits;  conditional E-value: 3.5e-05
      AAA_21 225 engdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSplll 302
                   g  q   +  lS+G+++   ++ all+  ++   ll+DEp ngL+   + +l++ + +    ++ v++++H+  ll
  KKY14407.1 518 LSGESQTALMGTLSEGQRSR--VVFALLAIESP-NMLLLDEPTNGLDIPTIDSLADAILAY---NGGVVVVSHDFRLL 589
                 55666667778889998876..66777766666.9********************999444...35899999985555 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0013       0.6      28      44 ..     125     141 ..     109     143 .. 0.83
   2 ?    5.3   0.0     0.025        12     136     204 ..     240     302 ..     202     316 .. 0.77
   3 !   13.3   0.1   9.1e-05     0.042      25     211 ..     436     598 ..     425     605 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0013
                 EEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAi 44 
                  ++G+NG+GKs ll Ai
  KKY14407.1 125 GLLGENGCGKSTLLKAI 141
                 579*************9 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.025
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlek 204
                  +SgG +  vala       + + +l llD+  a+LD +    + e+lk+  k   ++ +s++ ++l+ 
  KKY14407.1 240 DMSGGWRMRVALA----KALFVKPSLLLLDDPTAHLDLEACVWLEEYLKKWDK--TLVLVSHSMDFLNG 302
                 5777776555554....3445566799**********************9884..45666777766665 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 9.1e-05
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkev 123
                 s ta+vGpNG GKs ll  +   L+ +s +  r++                + ++ ++ +++ ++l  +k+ +   r ++ +++++y+  +++  +  +
  KKY14407.1 436 SRTALVGPNGVGKSTLLRIMTGKLSPTSGSVSRHT----------------HLKLGMYSQHSAEQLDLTKSALDFVRDKYPEKSQDYQYWRQQLGRYGL 518
                 568999********999988666665444222222................223333333444445556666788888888888888888888877777 PP

                 HHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 124 sellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgv 211
                 s   ++a   + +LS G+++ v    +fA+ +++   + llDe    LD   +  +a+ + + +    ++v+s++ ++l k  k + v
  KKY14407.1 519 SGESQTA--LMGTLSEGQRSRV----VFALLAIESPNMLLLDEPTNGLDIPTIDSLADAILAYN--GGVVVVSHDFRLLDKIAKDIMV 598
                 7654444..4557999999855....45555666667889999999999999999999888776..7788888888877776665555 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.4       6.7   3.1e+03     201     249 ..      12      66 ..       9     101 .. 0.61
   2 !   15.6   0.0   2.3e-05      0.01      28      84 ..     126     312 ..     110     384 .. 0.63
   3 !   14.7   0.0     4e-05     0.018      17      43 ..     430     455 ..     425     503 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 6.7
      AAA_15 201 sakRnvsdedsekkssllgklkekileealqekl.......eeelteklkeiqekl 249
                 +akR ++ +d++k+  ++ + k      +++++        + e++    e  +k+
  KKY14407.1  12 QAKRAAEGKDKKKTAASKVSSKAASQNASSASSVngdepldD-EDIATNAEKMDKV 66 
                 677777777777777666666666666655555566554432.2222222222222 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 2.3e-05
      AAA_15  28 liGkNnsGKSsilealdlFlnnkekkn..............................kkvikiekedleifeniseskdikIdvef............. 83 
                 l G+N++GKS++l+a+d     k+++                               k+ + ++ +  ei e++ ++ ++ +d++              
  KKY14407.1 126 LLGENGCGKSTLLKAID-----KREYPipehidiyllnegaeksdfgaldwvvnqaeKEMDRLDRQAEEILEKDGPESPVLLDIYDrmegmdpstfhtr 219
                 67**************5.....33333456667777777777777777777777776666666666666666667777777777767777777777777 PP

      AAA_15  84 ............................................................................................a 84 
                                                                                                             +
  KKY14407.1 220 asliltglgfnkttiqkktkdmsggwrmrvalakalfvkpsllllddptahldleacvwleeylkkwdktlvlvshsmdflngvctnmidmrQ 312
                 777666666666666666666666666666666666666666666666666666666666666666666666666666666666666555541 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 4e-05
      AAA_15  17 veidlseeltvliGkNnsGKSsileal 43 
                 + +d+++  t l+G+N++GKS++l+++
  KKY14407.1 430 FGVDMDS-RTALVGPNGVGKSTLLRIM 455
                 6688999.9***************987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   0.00011     0.052      17      42 ..     116     141 ..     109     145 .. 0.79
   2 !   17.4   0.1   6.1e-06    0.0028      16      39 ..     429     452 ..     423     465 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00011
      AAA_29  17 ieidlkgatlltGpsGsGKSTllDAi 42 
                 +e++ +  + l G++G GKSTll Ai
  KKY14407.1 116 LELNYARRYGLLGENGCGKSTLLKAI 141
                 555655567799***********997 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 6.1e-06
      AAA_29  16 tieidlkgatlltGpsGsGKSTll 39 
                 ++ +d+++ t l+Gp+G+GKSTll
  KKY14407.1 429 DFGVDMDSRTALVGPNGVGKSTLL 452
                 566777778**************9 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.8e-05     0.031      24      39 ..     126     141 ..     110     142 .. 0.86
   2 ?    4.9   0.5     0.073        33     147     188 ..     327     377 ..     279     380 .. 0.72
   3 !   14.5   0.0   8.1e-05     0.037      22      40 ..     438     456 ..     421     507 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.8e-05
      AAA_23  24 ItGpNGaGKTTildAi 39 
                 + G+NG+GK+T+l Ai
  KKY14407.1 126 LLGENGCGKSTLLKAI 141
                 78*************9 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.073
      AAA_23 147 el..kdkkerleelekeleeledekkllekl.......eqekekekeleel 188
                 ++  +++ +++++++k++ee++ +kk++           q+k+++k l++ 
  KKY14407.1 327 KTrsENETNQMKAYNKQQEEIQHIKKFIASAgtyanlvRQAKSRQKILDKM 377
                 332345566999999999999999999998888888776777777766655 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 8.1e-05
      AAA_23  22 tlItGpNGaGKTTildAik 40 
                 t+++GpNG GK+T+l+ ++
  KKY14407.1 438 TALVGPNGVGKSTLLRIMT 456
                 899************9776 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0042       1.9     102     122 ..     124     144 ..      93     160 .. 0.87
   2 ?   -1.7   0.1         5   2.3e+03      50      99 ..     302     356 ..     283     362 .. 0.68
   3 !   19.4   0.1   1.7e-06   0.00078      93     134 ..     428     470 ..     411     492 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0042
                  EEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe 122
                    l+G+ G GKStL++a++ +
   KKY14407.1 124 YGLLGENGCGKSTLLKAIDKR 144
                  5689************99875 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 5
                  EEEEE-GGG--HHH.....HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  50 vivlnKiDlleeee.....eleelkeelealgyevllvsaktkegleelkellkd 99 
                   ++ n iD+ +++      +++++ ++ ++ +++ ++  +k++e+++++k+ +++
   KKY14407.1 302 GVCTNMIDMRQKQLiyyggNYDSYVKTRSENETNQMKAYNKQQEEIQHIKKFIAS 356
                  5666667776666667777777777777777888888888888888888887765 PP

  == domain 3  score: 19.4 bits;  conditional E-value: 1.7e-06
                  HHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S------ CS
  RsgA_GTPase  93 lkellkd.ktsvlvGqSGvGKStLinallpelelktgevsekl 134
                  l   ++  + ++lvG+ GvGKStL+  ++++l+   g+vs+++
   KKY14407.1 428 LDFGVDMdSRTALVGPNGVGKSTLLRIMTGKLSPTSGSVSRHT 470
                  555555447899********************99999999865 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0014      0.65       3      67 ..     126     190 ..     125     209 .. 0.59
   2 ?   -1.4   0.1       6.9   3.2e+03      27      62 ..     306     344 ..     274     381 .. 0.62
   3 !   13.4   0.0   0.00019     0.087       3      52 ..     440     491 ..     439     537 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0014
      AAA_18   3 ltGtpGvGKttlakeLskrlgf..gvnlrdvakenglllevdpe..aldeskrldedkldklldaleen 67 
                 l G  G+GK+tl k++ kr+ +   +++  ++ ++g + +++ +  +        e+ +d+l ++ ee+
  KKY14407.1 126 LLGENGCGKSTLLKAIDKRE-YpiPEHIDIYLLNEGAEKSDFGAldW---VVNQAEKEMDRLDRQAEEI 190
                 67888**************6.55566666666666666666666442...2222222333333333333 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 6.9
      AAA_18  27 nlrdvakenglllevdpe...aldeskrldedkldklld 62 
                 n +d+ ++  ++++ + +   +++++++ +++k  + ++
  KKY14407.1 306 NMIDMRQKQLIYYGGNYDsyvKTRSENETNQMKAYNKQQ 344
                 455555555555555555434334444444444333333 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 0.00019
      AAA_18   3 ltGtpGvGKttlakeLskrlgf...gvnlrdvakenglllevdpealdeskrl 52 
                 l G+ GvGK+tl +    +l +   g ++r+++ + g++    +e+ld +k +
  KKY14407.1 440 LVGPNGVGKSTLLRIMTGKL-SptsGSVSRHTHLKLGMYSQHSAEQLDLTKSA 491
                 89**************8777.2358**************99999944444443 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0013      0.59      29      63 ..     126     164 ..     121     266 .. 0.66
   2 !   12.7   0.0   0.00028      0.13      27     103 ..     438     515 ..     422     599 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0013
      AAA_16  29 lsGesGvGKsslvrellr...alekd.ggiflrgkcdql 63 
                 l Ge G+GKs+l++++ +   ++ ++ ++++l++ ++++
  KKY14407.1 126 LLGENGCGKSTLLKAIDKreyPIPEHiDIYLLNEGAEKS 164
                 78************9997333333334455555544444 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00028
      AAA_16  27 vllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqllde...aesaeleawreklee 103
                 + l+G+ GvGKs+l+r     l+ + g + r +  +l     ys+  a++l+  +   +  ++   ++s++ ++wr++l +
  KKY14407.1 438 TALVGPNGVGKSTLLRIMTGKLSPTSGSVSRHTHLKL---GMYSQhSAEQLDLTKSALDFVRDkypEKSQDYQYWRQQLGR 515
                 6799************999999998666666666666...23344445544333332233222555556677777776654 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.015       6.7       2      20 ..     124     142 ..     123     153 .. 0.85
   2 !   14.7   0.0   5.4e-05     0.025       2      27 ..     438     463 ..     437     488 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.015
                 EEEEESTTSSHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinalt 20 
                  +++G    GKStL++a+ 
  KKY14407.1 124 YGLLGENGCGKSTLLKAID 142
                 5899************985 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 5.4e-05
                 EEEEESTTSSHHHHHHHHHTSTEEES CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivs 27 
                  a+vG   vGKStL++ +tg+ + +s
  KKY14407.1 438 TALVGPNGVGKSTLLRIMTGKLSPTS 463
                 699*****************965443 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.4e-05    0.0065       4      70 ..     126     193 ..     123     218 .. 0.75
   2 ?    5.9   0.1      0.03        14       2      20 ..     438     456 ..     437     493 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.4e-05
      AAA_28   4 itGgestGKTtlleaLaargypvvpEaareileekl..akgedalpwv.edllafaervleeqleeeaaa 70 
                 ++G  ++GK+tll+a+ +r+yp +pE    +l +++  +++++al+wv +++   +  +l+ q+ee  + 
  KKY14407.1 126 LLGENGCGKSTLLKAIDKREYP-IPEHIDIYLLNEGaeKSDFGALDWVvNQAE-KEMDRLDRQAEEILEK 193
                 67889*****************.588888888888856777899***965544.4444566666665554 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.03
      AAA_28   2 ivitGgestGKTtlleaLa 20 
                  +++G+ + GK+tll+ ++
  KKY14407.1 438 TALVGPNGVGKSTLLRIMT 456
                 589************9776 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   0.00011      0.05       8     121 ..     103     218 ..      96     241 .. 0.69
   2 !    7.5   0.0    0.0061       2.8      18      47 ..     427     456 ..     410     495 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      AAA_27   8 LeryGk..ftdrsldfsaeeadlhliyGpNEAGKstalrAisdllfGipertkdnflhd.akkLrigavleeadgeelefaRrkgrkktlldaddqalp 103
                 L  +Gk  +td++l+++  +++   ++G N  GKst+l+Ai +  + ipe+ +   l + a+k   ga+    +++e e+ R  ++ +++l++d+ + p
  KKY14407.1 103 LVFHGKvlITDTTLELNY-ARRYG-LLGENGCGKSTLLKAIDKREYPIPEHIDIYLLNEgAEKSDFGALDWVVNQAEKEMDRLDRQAEEILEKDGPESP 199
                 555565335899999983.44444.57**********************99876666551445556666556667777777777777777777776544 PP

      AAA_27 104 ..eevlaallggldretFea 121
                    ++ ++ ++g+d +tF++
  KKY14407.1 200 vlLDIYDR-MEGMDPSTFHT 218
                 31333333.56666666665 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0061
      AAA_27  18 sldfsaeeadlhliyGpNEAGKstalrAis 47 
                 +ldf+ + ++ + ++GpN  GKst+lr ++
  KKY14407.1 427 NLDFGVDMDSRTALVGPNGVGKSTLLRIMT 456
                 78999999999999***********99765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0     0.008       3.7      10      29 ..     126     145 ..     120     233 .. 0.82
   2 !   12.0   0.0   0.00042      0.19       8      66 ..     438     497 ..     434     570 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.008
      AAA_22  10 vtGesGtGKTtllrrlleql 29 
                 + Ge G+GK+tll+ + ++ 
  KKY14407.1 126 LLGENGCGKSTLLKAIDKRE 145
                 57************987764 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00042
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee.....erpevvfvtlpsstsskdllrellralgl 66 
                 ++++G+ G+GK+tllr ++ +l             +    + ++ ++s ++ dl +  l ++ +
  KKY14407.1 438 TALVGPNGVGKSTLLRIMTGKLSPT----SgsvsrHTHLKLGMYSQHSAEQLDLTKSALDFVRD 497
                 689*************999998422....23443322222355555555555555555555554 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0016      0.72       5      20 ..     126     141 ..     122     144 .. 0.88
   2 !    9.5   0.0    0.0019      0.89       3      26 ..     438     461 ..     436     554 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0016
                 EEC-TTTCHHHHHHHH CS
       NACHT   5 lqGeaGsGKTtLlqkl 20 
                 l Ge+G+GK+tLl+ +
  KKY14407.1 126 LLGENGCGKSTLLKAI 141
                 78***********987 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0019
                 EEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   3 vilqGeaGsGKTtLlqklalawae 26 
                  +l G++G+GK+tLl+ +  ++  
  KKY14407.1 438 TALVGPNGVGKSTLLRIMTGKLSP 461
                 6899***********876666543 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.012       5.6       3      21 ..     126     144 ..     124     213 .. 0.81
   2 !   10.5   0.0    0.0014      0.63       3      35 ..     440     472 ..     438     555 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.012
                 EESSTTSSHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavake 21 
                 l G  G+GK++l ka+ k 
  KKY14407.1 126 LLGENGCGKSTLLKAIDKR 144
                 78*************9665 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0014
                 EESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS CS
         AAA   3 lyGppGtGKTllakavakelgvefleisgsell 35 
                 l+Gp G+GK++l + +  +l+ +  ++s ++ l
  KKY14407.1 440 LVGPNGVGKSTLLRIMTGKLSPTSGSVSRHTHL 472
                 89**************99997555444444444 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0065         3       3      36 ..     126     156 ..     125     166 .. 0.68
   2 ?    0.3   0.4         2   9.2e+02      24      87 ..     306     367 ..     294     375 .. 0.73
   3 !    8.8   0.1    0.0044         2       3      26 ..     440     463 ..     438     489 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0065
  RNA_helicase   3 lyGpsgeGKStlakeLakallkklklkkkdsvys 36 
                   l G++g+GKStl k + k+ +  +  +++ ++y 
    KKY14407.1 126 LLGENGCGKSTLLKAIDKR-E--YPIPEHIDIYL 156
                   57***********994433.2..24455555555 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 2
  RNA_helicase  24 kklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkdeenpsdlaelirlvsstpyplnma 87 
                   + +++ +k+ +y++++ d++++  +++e + +   +++++e   + ++ +i  + ++   +  a
    KKY14407.1 306 NMIDMRQKQLIYYGGNYDSYVKTRSENETNQMKAYNKQQEE--IQHIKKFIASAGTYANLVRQA 367
                   44578899999999999999999999999999988888877..667777777766666555555 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0044
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl 26 
                   l+Gp+g+GKStl + ++ +l+ ++
    KKY14407.1 440 LVGPNGVGKSTLLRIMTGKLSPTS 463
                   79************9988887544 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0      0.01       4.7      24      45 ..     125     146 ..     119     195 .. 0.87
   2 ?    0.9   0.0      0.46   2.1e+02      76     117 ..     227     272 ..     213     293 .. 0.74
   3 !    7.0   0.0    0.0064       2.9      10      43 ..     426     458 ..     418     490 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.01
                 EEEESTTSSHHHHHHHHCCSHC CS
      NB-ARC  24 alvGmgGvGKttlakqilnksd 45 
                 +l G  G+GK+tl+k i +   
  KKY14407.1 125 GLLGENGCGKSTLLKAIDKREY 146
                 689************9988755 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.46
                 HHCCCTTSSSS-STTS....HHHHHHHHCCCTTEEEEEEEE-SHHH CS
      NB-ARC  76 Lslseddleekeeves....lkrklvrlLltkrfllvlDDVweeed 117
                 L+ ++  +++k++  s    +   l ++L  k +ll+lDD   + d
  KKY14407.1 227 LGFNKTTIQKKTKDMSggwrMRVALAKALFVKPSLLLLDDPTAHLD 272
                 5555555555555555667688899***************655555 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0064
                 HHHHCTTTSCSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  10 ekLlekdelqslvvalvGmgGvGKttlakqilnk 43 
                 e+L+   +++    alvG  GvGK+tl++ +  k
  KKY14407.1 426 ENLDFGVDMD-SRTALVGPNGVGKSTLLRIMTGK 458
                 5555445555.4569************9876665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.016       7.3       3      22 ..     122     141 ..     120     193 .. 0.84
   2 ?   -0.7   0.2       2.2   9.9e+02      93     137 ..     329     375 ..     321     393 .. 0.62
   3 !    7.7   0.0    0.0057       2.6       4      22 ..     437     455 ..     434     462 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.016
      AAA_24   3 lkiliyGpsgiGKTtlakel 22 
                 +++ + G++g GK+tl+k +
  KKY14407.1 122 RRYGLLGENGCGKSTLLKAI 141
                 57889************988 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2.2
      AAA_24  93 eskedkgdgkGygelaeefrrllkklqelrk..nvifiahektrkde 137
                 +s+++ +++k+y + +ee++ + k + +++   n +  a+++++  +
  KKY14407.1 329 RSENETNQMKAYNKQQEEIQHIKKFIASAGTyaNLVRQAKSRQKILD 375
                 45556667777777777777666666666655666555555555544 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0057
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                 + +++Gp+g+GK+tl++ +
  KKY14407.1 437 RTALVGPNGVGKSTLLRIM 455
                 789************9877 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.013       5.8       4      39 ..     126     164 ..     125     179 .. 0.78
   2 !    8.0   0.1    0.0059       2.7       4      23 ..     440     459 ..     438     475 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.013
                 EE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HH CS
       AAA_5   4 LvGppGtgKselaerlaaal...nreveyvqltrdttee 39 
                 L+G+ G+gKs+l + + ++       + +++l+++ +++
  KKY14407.1 126 LLGENGCGKSTLLKAIDKREypiPEHIDIYLLNEGAEKS 164
                 89***********99987755556666666666666555 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0059
                 EE--SSSSHHHHHHHGGGGB CS
       AAA_5   4 LvGppGtgKselaerlaaal 23 
                 LvGp G+gKs+l + +   l
  KKY14407.1 440 LVGPNGVGKSTLLRIMTGKL 459
                 9************9987766 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.039        18       4      23 ..     126     145 ..     123     154 .. 0.85
   2 !    8.4   0.1    0.0053       2.4       3      30 ..     439     465 ..     437     494 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.039
                 EESSTTSSHHHHHHCHCT-C CS
         Roc   4 lvGdsgvGKtsllkrfvedk 23 
                 l+G++g GK++llk + +++
  KKY14407.1 126 LLGENGCGKSTLLKAIDKRE 145
                 89***********9886665 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0053
                 EEESSTTSSHHHHHHCHCT-CCC-EEET CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekeks 30 
                  lvG +gvGK++ll r++++k s+++ s
  KKY14407.1 439 ALVGPNGVGKSTLL-RIMTGKLSPTSGS 465
                 69**********98.5677777766554 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.014       6.5       7      35 ..     126     155 ..     122     211 .. 0.66
   2 ?    6.3   0.0     0.021       9.5       6      28 ..     439     466 ..     436     508 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.014
      AAA_14   7 itGaRrvGKTtllkqlikell.vkkesily 35 
                 + G   +GK+tllk + k+++ +++   +y
  KKY14407.1 126 LLGENGCGKSTLLKAIDKREYpIPEHIDIY 155
                 678889********9999998543322233 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.021
      AAA_14   6 vitGaRrvGKTtllkqlikell.....v 28 
                 +++G+  vGK+tll+ +  +l      v
  KKY14407.1 439 ALVGPNGVGKSTLLRIMTGKLSptsgsV 466
                 689**********988776665555444 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0051       2.3       1      82 [.     127     208 ..     127     218 .. 0.71
   2 ?    4.8   0.0      0.08        37       1      19 [.     441     459 ..     441     508 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0051
                 EE-TTSSHHHHHHHH.HHHHTEE.EEEHHHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHH.HSSEEEEEE-SEE CS
      AAA_17   1 lGgPGsGKgtqcekl.vekygft.hlsaGdllreeakrgglakardemrklpleekkelqkeaaekiaeea.kkkgvlvdghpri 82 
                 lG  G+GK+t+++ + +++y ++ h+    ll e a+++    a d + +  ++e ++l+++a+e i e++  ++ vl+d + r+
  KKY14407.1 127 LGENGCGKSTLLKAIdKREYPIPeHID-IYLLNEGAEKSDF-GALDWVVNQAEKEMDRLDRQAEE-ILEKDgPESPVLLDIYDRM 208
                 5778********888557888875666.3566666666665.46777778888888888888875.5555536677888877665 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.08
                 EE-TTSSHHHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklveky 19 
                 +G+ G+GK+t+++ +  k+
  KKY14407.1 441 VGPNGVGKSTLLRIMTGKL 459
                 79**********7776666 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.013         6      50      69 ..     126     145 ..     108     178 .. 0.76
   2 ?    6.3   0.0     0.017       7.9      50      83 ..     440     473 ..     434     515 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.013
       Rad17  50 isGPsGCgkstvvkvLskel 69 
                 + G  GCgkst +k + k  
  KKY14407.1 126 LLGENGCGKSTLLKAIDKRE 145
                 6699**********999864 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.017
       Rad17  50 isGPsGCgkstvvkvLskelgiklrewlnpvslk 83 
                 + GP G gkst +++++ +l++     +  + lk
  KKY14407.1 440 LVGPNGVGKSTLLRIMTGKLSPTSGSVSRHTHLK 473
                 68**************999888776666666665 PP

>> DUF2813  Protein of unknown function (DUF2813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0057       2.6      17      42 ..     116     141 ..     114     144 .. 0.87
   2 ?   -2.9   0.3       6.8   3.1e+03     233     252 ..     336     355 ..     312     376 .. 0.50
   3 ?    4.5   0.0     0.039        18      19      48 ..     432     461 ..     429     474 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0057
     DUF2813  17 LSlsleentvLiGENaWGKSSLldAL 42 
                 L l+  +   L+GEN  GKS Ll+A+
  KKY14407.1 116 LELNYARRYGLLGENGCGKSTLLKAI 141
                 6677778889**************97 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.8
     DUF2813 233 ssskeqllweklkslnqllk 252
                 +++  ++++e+++++++++ 
  KKY14407.1 336 QMKAYNKQQEEIQHIKKFIA 355
                 11222222222333333333 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.039
     DUF2813  19 lsleentvLiGENaWGKSSLldALslilnv 48 
                 + +++ t+L+G N  GKS Ll+ ++  l++
  KKY14407.1 432 VDMDSRTALVGPNGVGKSTLLRIMTGKLSP 461
                 578999***************988877765 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0039       1.8      53      75 ..     121     143 ..      90     178 .. 0.88
   2 ?    3.2   0.0     0.089        41      57      78 ..     439     460 ..     412     487 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0039
      DUF815  53 annvLLwGarGtGKSslvkalln 75 
                 a+   L G+ G+GKS+l+ka+ +
  KKY14407.1 121 ARRYGLLGENGCGKSTLLKAIDK 143
                 5666699*************976 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.089
      DUF815  57 LLwGarGtGKSslvkallneya 78 
                  L+G  G+GKS+l++ ++ +++
  KKY14407.1 439 ALVGPNGVGKSTLLRIMTGKLS 460
                 489************9987765 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.045        21     251     267 ..     128     144 ..     125     151 .. 0.83
   2 ?    4.0   0.0     0.038        18     306     351 ..     224     269 ..     216     308 .. 0.87
   3 ?    0.6   0.0      0.41   1.9e+02     247     262 ..     438     453 ..     431     458 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.045
                 E-TTSSHHHHHHHHHHC CS
  ABC_ATPase 251 GggfhGKsTLLeAlekG 267
                 G +  GKsTLL+A++k 
  KKY14407.1 128 GENGCGKSTLLKAIDKR 144
                 77778*********985 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.038
                 B---CCC--STTEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS CS
  ABC_ATPase 306 innLPegkdttkfstedASGStsqAanimealeagakllLiDEDts 351
                 ++ L  +k+t +  t+d SG   + +++++al ++ +llL+D  t+
  KKY14407.1 224 LTGLGFNKTTIQKKTKDMSGGWRMRVALAKALFVKPSLLLLDDPTA 269
                 66778899999*******************************7665 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.41
                 EEEEE-TTSSHHHHHH CS
  ABC_ATPase 247 tlIvGggfhGKsTLLe 262
                 t++vG++  GKsTLL+
  KKY14407.1 438 TALVGPNGVGKSTLLR 453
                 7899***********8 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.17        80      23      39 ..     126     142 ..     119     146 .. 0.86
   2 ?   -0.3   0.0       1.6   7.3e+02     124     188 ..     309     384 ..     285     388 .. 0.68
   3 ?    6.7   0.1     0.012       5.4      21      41 ..     438     458 ..     432     586 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.17
      AAA_30  23 ltGpAGtGKttalkalr 39 
                 l G  G GK+t+lka+ 
  KKY14407.1 126 LLGENGCGKSTLLKAID 142
                 67999*********996 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.6
      AAA_30 124 DerQlasVeaGgvlrdlveaa.gigtaeLtevvRqkes.........eeraaalalregdae.ealealadrgrih 188
                 D rQ + +  Gg +++ v+++ + +t +++   +q+e+         +  + a+ +r+ + + + l+++++ g+i+
  KKY14407.1 309 DMRQKQLIYYGGNYDSYVKTRsENETNQMKAYNKQQEEiqhikkfiaSAGTYANLVRQAKSRqKILDKMEADGFIQ 384
                 6677777777777777776643556777777777754333333333355666666666666666777777777776 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.012
      AAA_30  21 avltGpAGtGKttalkalrea 41 
                 ++l+Gp G GK+t+l+ ++  
  KKY14407.1 438 TALVGPNGVGKSTLLRIMTGK 458
                 689************988655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.22     1e+02      35      53 ..     123     141 ..     112     155 .. 0.81
   2 ?    8.3   0.0    0.0033       1.5      31      60 ..     433     462 ..     427     492 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.22
       AAA_7  35 pvllvGptGtGKtviikdl 53 
                    l G+ G+GK++++k +
  KKY14407.1 123 RYGLLGENGCGKSTLLKAI 141
                 55689*********99875 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0033
       AAA_7  31 knkkpvllvGptGtGKtviikdllkkldke 60 
                 + +  + lvGp G+GK+++++ ++ kl+++
  KKY14407.1 433 DMDSRTALVGPNGVGKSTLLRIMTGKLSPT 462
                 6677889************99999888754 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.018       8.1      25      44 ..     126     145 ..     114     202 .. 0.67
   2 ?   -1.3   0.1       3.7   1.7e+03      42      71 ..     327     366 ..     320     412 .. 0.59
   3 ?    4.1   0.0     0.081        37      26      42 ..     441     457 ..     433     504 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.018
    ATPase_2  25 iYGpegsGKtaLlkeiienl 44 
                 + G  g+GK++Llk i ++ 
  KKY14407.1 126 LLGENGCGKSTLLKAIDKRE 145
                 66999********9986665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.7
    ATPase_2  42 enledkdkyviyyialreesiskldefie..........e 71 
                 + +++ + + +  ++ ++e+i+++++fi+          +
  KKY14407.1 327 KTRSENETNQMKAYNKQQEEIQHIKKFIAsagtyanlvrQ 366
                 4455555566666677777777777777665555433222 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.081
    ATPase_2  26 YGpegsGKtaLlkeiie 42 
                  Gp g+GK++Ll+ +  
  KKY14407.1 441 VGPNGVGKSTLLRIMTG 457
                 6***********97665 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.007       3.2      12      79 ..      76     143 ..      63     161 .. 0.85
   2 ?    3.9   0.0     0.054        25      59      95 ..     437     474 ..     426     489 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.007
                 STHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHH CS
         MCM  12 kdiieklvksiapsiyghedvkkaillqlfggvkkkledktklrgdinvllvgdpgtaKsqlLkyvek 79 
                 + + +++++ +  s+  ++dvk + + ++f g    ++   +l       l+g+ g++Ks+lLk++ k
  KKY14407.1  76 HGLSDRVTTGVLASLEASRDVKITSASLVFHGKVLITDTTLELNYARRYGLLGENGCGKSTLLKAIDK 143
                 45677888888899999999999999999999998888888999999999**************9976 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.054
                 EEEEEESSTSTHHHHHHHH.HHHSSSEEEEESSSSSSS CS
         MCM  59 nvllvgdpgtaKsqlLkyv.eklapravytsgkgssaa 95 
                    lvg  g++Ks+lL+ +  kl+p++  +s ++  + 
  KKY14407.1 437 RTALVGPNGVGKSTLLRIMtGKLSPTSGSVSRHTHLKL 474
                 5679*************873577887777776665555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.81   3.7e+02      38      50 ..     126     138 ..     124     141 .. 0.89
   2 ?    8.3   0.0    0.0034       1.6      31      50 ..     433     452 ..     404     463 .. 0.87
   3 ?   -0.9   0.0       2.2     1e+03     100     147 ..     535     582 ..     513     583 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.81
      AAA_25  38 laGapgtGKttla 50 
                 l G  g+GK+tl+
  KKY14407.1 126 LLGENGCGKSTLL 138
                 6799*******97 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0034
      AAA_25  31 pagelallaGapgtGKttla 50 
                  +++ ++l+G+ g+GK+tl+
  KKY14407.1 433 DMDSRTALVGPNGVGKSTLL 452
                 67899*************97 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 2.2
      AAA_25 100 darllvldlagveslpLfakdrggtlltadvdaleaaieevegvrlvv 147
                 ++r+ +  la + +++L+ ++  + l  + +d l++ai +++g ++vv
  KKY14407.1 535 RSRVVFALLAIESPNMLLLDEPTNGLDIPTIDSLADAILAYNGGVVVV 582
                 56666666777667777777777777668899*******976544444 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.4       9.9   4.6e+03     112     126 ..       9      23 ..       6      35 .. 0.71
   2 ?    3.4   0.0      0.17        76       6      22 ..     128     144 ..     126     200 .. 0.69
   3 ?    9.6   0.1    0.0021      0.98       4      25 ..     440     463 ..     438     541 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 9.9
      AAA_33 112 keRlakRaangddrs 126
                 ++R akRaa+g+d+ 
  KKY14407.1   9 AARQAKRAAEGKDKK 23 
                 579999999986542 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.17
      AAA_33   6 GlpGsGKstlaerllkk 22 
                 G +G+GKstl++ + k+
  KKY14407.1 128 GENGCGKSTLLKAIDKR 144
                 889*******9987544 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0021
      AAA_33   4 lvGlpGsGKstlaerllkklg..a 25 
                 lvG++G+GKstl++ +  kl    
  KKY14407.1 440 LVGPNGVGKSTLLRIMTGKLSptS 463
                 79***********99888877543 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.014       6.3       6      25 ..     126     145 ..     121     150 .. 0.88
   2 ?   -1.0   0.1       2.9   1.3e+03      27      49 ..     339     362 ..     327     381 .. 0.69
   3 ?    1.9   0.1      0.36   1.7e+02       3      23 ..     437     457 ..     435     460 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.014
   PduV-EutP   6 liGkvgsGKttLtqalkgee 25 
                 l+G+ g+GK tL +a++++e
  KKY14407.1 126 LLGENGCGKSTLLKAIDKRE 145
                 89*************99865 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.9
   PduV-EutP  27 kYkktq.aiefsdeviDtPGeyle 49 
                  Y+k q  i++ +++i + G y++
  KKY14407.1 339 AYNKQQeEIQHIKKFIASAGTYAN 362
                 466666346777777777777764 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.36
   PduV-EutP   3 killiGkvgsGKttLtqalkg 23 
                 +  l+G+ g+GK tL + ++g
  KKY14407.1 437 RTALVGPNGVGKSTLLRIMTG 457
                 6789***********988776 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.014       6.5      23      40 ..     121     138 ..      86     141 .. 0.91
   2 ?   -2.5   0.1       4.9   2.2e+03     217     245 ..     329     355 ..     288     384 .. 0.55
   3 ?    3.2   0.0     0.089        41      24      40 ..     436     452 ..     430     456 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.014
                 --EEEEE-SSSSSTTTTH CS
        DAP3  23 vkrlvltGekgsGKSvlL 40 
                 + r+ l Ge+g+GKS+lL
  KKY14407.1 121 ARRYGLLGENGCGKSTLL 138
                 578999**********99 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.9
                 S-SS--SS---HHHHHTTTTTGGG-S-E. CS
        DAP3 217 sssntpksatlevallqeearpqldpYvk 245
                  s+n+++  +++ + +q+e+ +++  +++
  KKY14407.1 329 RSENETN--QMKAYNKQQEEIQHIKKFIA 355
                 2222222..45555555555555555554 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.089
                 -EEEEE-SSSSSTTTTH CS
        DAP3  24 krlvltGekgsGKSvlL 40 
                  r  l G +g+GKS+lL
  KKY14407.1 436 SRTALVGPNGVGKSTLL 452
                 688999*********98 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       4.7   2.2e+03     113     140 ..      61      88 ..      55      99 .. 0.80
   2 ?    2.6   0.0      0.19        87       4      22 ..     125     143 ..     122     149 .. 0.84
   3 ?    5.4   0.0     0.026        12       3      23 ..     438     458 ..     436     480 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.7
                 ETHHHHHHTTEEE-HHHHHHHHTS-EEE CS
      FeoB_N 113 nmideaekkgieidlkkLsekLgvpvvk 140
                  ++d++++   ++d++ Ls+++ + v++
  KKY14407.1  61 EKMDKVKDLTAQLDKHGLSDRVTTGVLA 88 
                 5799999999999999999998887765 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.19
                 EEEESTTSSHHHHHHHHHT CS
      FeoB_N   4 alvGnpnvGkttlfnaltg 22 
                  l+G+  +Gk+tl+ a+ +
  KKY14407.1 125 GLLGENGCGKSTLLKAIDK 143
                 589***********99865 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.026
                 EEEEESTTSSHHHHHHHHHTT CS
      FeoB_N   3 valvGnpnvGkttlfnaltga 23 
                  alvG   vGk+tl+  +tg+
  KKY14407.1 438 TALVGPNGVGKSTLLRIMTGK 458
                 69****************996 PP

>> UvsY  Recombination, repair and ssDNA binding protein UvsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       3.1   1.4e+03     104     128 ..     136     160 ..     134     161 .. 0.87
   2 ?    9.8   1.1    0.0021      0.95      46     103 ..     308     365 ..     281     382 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 3.1
                 HHHHHHHHHHHHHHHHHHHHHHHHT CS
        UvsY 104 ealkaikqrgfsiknaielrkleaG 128
                   lkai +r + i + i++  l+ G
  KKY14407.1 136 TLLKAIDKREYPIPEHIDIYLLNEG 160
                 679**************99888877 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0021
                 HHHHHHHHHHHTTSSSSB--SS---HH.HHHHHHHTCHHHHHHHHHHHHHHHHHHHHH CS
        UvsY  46 kkllkerleyYtgraddevykeeveksdelkvvlaaDeevikidakiqyidqvldFle 103
                   +++++l yY+g  d+ v +   ++++++k + +  ee+++i++ i+   + ++ ++
  KKY14407.1 308 IDMRQKQLIYYGGNYDSYVKTRSENETNQMKAYNKQQEEIQHIKKFIASAGTYANLVR 365
                 567889999**********999999999***************999987766666555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.29   1.3e+02       4      19 ..     126     141 ..     123     144 .. 0.84
   2 ?   -2.6   0.1       9.4   4.3e+03       3      22 ..     223     241 ..     221     249 .. 0.77
   3 ?    6.3   0.1     0.018       8.2       3      24 ..     439     460 ..     437     468 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.29
                 EE--TTSSHHHHHHHH CS
    NTPase_1   4 iTGppGvGKtTlvkkv 19 
                 + G+ G GK+Tl+k +
  KKY14407.1 126 LLGENGCGKSTLLKAI 141
                 669*********9876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 9.4
                 EEE--TTSSHHHHHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlel 22 
                 ++TG  G  KtT+ kk  ++
  KKY14407.1 223 ILTG-LGFNKTTIQKKTKDM 241
                 6777.5999***99998765 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.018
                 EEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlellk 24 
                 ++ Gp GvGK+Tl++ ++ +l+
  KKY14407.1 439 ALVGPNGVGKSTLLRIMTGKLS 460
                 688**********998887775 PP

>> ATP19  ATP synthase subunit K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   1.4       2.9   1.3e+03      34      52 ..      19      37 ..      12      62 .. 0.58
   2 ?    8.6   0.1    0.0054       2.5      38      65 ..     330     357 ..     316     359 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 2.9
                XXXXXXX...XXXXXXXXX CS
       ATP19 34 ggskkkkaaaappinasss 52
                g+ kkk+aa++++ +a+s+
  KKY14407.1 19 GKDKKKTAASKVSSKAASQ 37
                4455555555666666652 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0054
                 XXX...XXXXXXXXXXXXXXXXXXXXXX CS
       ATP19  38 kkkaaaappinasssdEedfIknFlaea 65 
                 +++++++ +  ++ ++E + Ik+F+a+a
  KKY14407.1 330 SENETNQMKAYNKQQEEIQHIKKFIASA 357
                 333334788888889**********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1541  (0.0859501); expected 358.6 (0.02)
Passed bias filter:                      865  (0.0482459); expected 358.6 (0.02)
Passed Vit filter:                       118  (0.00658152); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              39  [number of targets reported over threshold]
# CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.53
# Mc/sec: 3548.74
//
Query:       KKY14408.1  [L=392]
Description: hypothetical protein UCRPC4_g06767 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-30  104.7   0.1    4.1e-30  104.2   0.1    1.2  1  SLATT_fungal  SMODS and SLOG-associating 2TM effector domain


Domain annotation for each model (and alignments):
>> SLATT_fungal  SMODS and SLOG-associating 2TM effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   0.1   2.3e-34   4.1e-30      23     118 ..       1     108 [.       1     110 [. 0.84

  Alignments for each domain:
  == domain 1  score: 104.2 bits;  conditional E-value: 2.3e-34
  SLATT_fungal  23 aiglQvllgAlltaLgalssgrtqvaitvLGalnTviAglLArlrgsgePersrkrrkdlekvireiea...............feldageasldvr 104
                   ++++Qv+lgA++taLga++s++  ++itv+Ga+nT+iAgl+A+l+++g+P+r+r++r+dle+v++eie+                e+d++  +++vr
    KKY14408.1   1 MLLSQVVLGAAVTALGASESSH--ILITVFGAVNTIIAGLIAYLKSRGQPMRARMFRDDLERVVDEIENsevmwlgistgvhgyDEIDTD-DKVTVR 94 
                   5899******************..*********************************************666554444444443333333.234567 PP

  SLATT_fungal 105 eeieelrrryeeal 118
                   +e+++l+r ye+a 
    KKY14408.1  95 SEVARLTRLYERAI 108
                   ***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       949  (0.052931); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.99u 0.37s 00:00:01.36 Elapsed: 00:00:00.55
# Mc/sec: 2131.41
//
Query:       KKY14409.1  [L=1421]
Description: putative chromatin remodeling complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-62  210.5   9.4    2.5e-62  209.4   9.4    1.6  1  zf-PHD-like  PHD/FYVE-zinc-finger like domain
    1.4e-53  181.9   0.1    2.4e-53  181.1   0.1    1.4  1  SNF2_N       SNF2 family N-terminal domain
    1.4e-18   67.2   0.0    4.8e-18   65.5   0.0    2.0  1  Helicase_C   Helicase conserved C-terminal domain
    1.5e-08   34.2   1.5    3.3e-08   33.1   1.5    1.5  1  HDA2-3       Class II histone deacetylase complex subunits 2 
    2.3e-06   27.6   0.2    1.2e-05   25.3   0.2    2.3  1  DUF1087      Domain of Unknown Function (DUF1087)
    2.7e-05   24.2   0.0    0.00014   22.0   0.0    2.2  2  ResIII       Type III restriction enzyme, res subunit
    0.00036   20.4   5.8    0.00036   20.4   5.8    3.1  4  PHD          PHD-finger
    0.00065   19.6   2.0        1.5    8.8   0.0    3.3  3  Chromo       Chromo (CHRromatin Organisation MOdifier) domain
  ------ inclusion threshold ------
      0.072   13.7   0.3      0.072   13.7   0.3    4.2  3  SnAC         Snf2-ATP coupling, chromatin remodelling complex
        1.2    9.1   5.3        4.3    7.4   4.0    2.4  2  Prok-RING_1  Prokaryotic RING finger family 1
          3    7.5   8.2        1.1    8.9   4.3    2.4  2  PHD_2        PHD-finger


Domain annotation for each model (and alignments):
>> zf-PHD-like  PHD/FYVE-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.4   9.4   1.6e-65   2.5e-62       1     169 []     360     536 ..     360     536 .. 0.95

  Alignments for each domain:
  == domain 1  score: 209.4 bits;  conditional E-value: 1.6e-65
  zf-PHD-like   1 CdtCaesk.deekgqlvyCqGCslsyhkaClGkRsaRehlvtkvgedsFvlqCrrCiglakkkdklapkldvCqeCkeegksckpfrekktakqeekl 97 
                  C +C+ +  +e kg+lv+CqGCs +yhk ClG+R +R+hlvtkvge +FvlqCrrCig+a++k+++ap+l++C++Cke g + +pfr++ t++qe+ +
   KKY14409.1 360 CLVCHIHGdNEVKGPLVFCQGCSDAYHKICLGNRGSRDHLVTKVGETHFVLQCRRCIGIAHQKERTAPHLGHCTACKELGPVNEPFRPRLTPRQEQVQ 457
                  889999987899************************************************************************************** PP

  zf-PHD-like  98 reendgvdPiteveeelinnaenvlfRCaeCkrawhlehlpkkskks.......eeedeeelaeerlkeysikwkCkdC 169
                  re ++g+dP+t v+++l+n  e+vlfRC++C+rawh++hlp++++ +       e+ +++el+++r++ey++   C++C
   KKY14409.1 458 REAHGGQDPVTLVNPNLLNRPEHVLFRCVNCTRAWHWHHLPSRKSLNgpdnedeEDLTQAELTQKRFEEYHRASVCREC 536
                  *****************************************99987778776555566788999**************9 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.1   0.1   1.5e-56   2.4e-53      55     348 ..     757    1028 ..     742    1030 .. 0.86

  Alignments for each domain:
  == domain 1  score: 181.1 bits;  conditional E-value: 1.5e-56
                  T--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH----------..----- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxx RF
      SNF2_N   55 vrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvap..kllad 149 
                  +++ iLaDemGLGKT+qv+++  +  +           d+   p L+vvP s++ +W +ei+++++s ++  ++++   ++  +  +++p  k    
  KKY14409.1  757 QQNAILADEMGLGKTIQVISFFSTMIQ-----------DHKCWPWLVVVPNSTCPNWRREIKKWAPSIRVVTYYGSATARRLAHDYELFPgeKDDMR 842 
                  5789*******************4444...........223468*************************9888887777766666666661144556 PP

                  --EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  150 ydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllq 246 
                  +++v+ +Y+ +  +a     r v+++++w+ vv+DEg++lk+  ++ +ea+sk++   +++ltGTP+qn+ ++l+ Ll+fL +++          l+
  KKY14409.1  843 AHIVVSSYEAMTDDA----ARRVISKISWQGVVVDEGQRLKSDRTQFYEALSKIRFPFKLLLTGTPLQNNARELFNLLQFLDPKIDA------AKLE 929 
                  89**********999....79**************************************************************9977......7899 PP

                  HHHHHHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-HHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  247 rpieaqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskekilelllelrqa 343 
                  +++e+ +++++++L++l++++ lrr+k +v   lPp  + i+ + ++ v++k+Y+ +l +  + + a +   + a+ ks++   + + ++l++lr++
  KKY14409.1  930 QEYEQLNKDKVAELHELIRPFFLRRTKVQVLTFLPPVAQIILPVTMTTVQKKVYKSILAKNPQLMKAIFSRPDGASNKSEK---HSLNNILMQLRKV 1023
                  99****************************99***********************66665555555544444444433333...5577889****** PP

                  HH--- CS
                  xxxxx RF
      SNF2_N  344 cnhpq 348 
                   +hp 
  KKY14409.1 1024 LCHPF 1028
                  ***96 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0     3e-21   4.8e-18       3     111 .]    1055    1167 ..    1053    1167 .. 0.90

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 3e-21
                  HHHHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH...TTSSSEEEESGGGTSSSTSTTESEEEESSSSS CS
  Helicase_C    3 leallell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn...kgesdvLiatdvaerGidipkvnlVinfdlpr 95  
                  l+ +  +l kl+e+g+++l+f+++ d+l+ ++ +l   g++  +l+g++++ e+++ +++fn   +  + +L++t++++ Gi++  +++Vi++d+++
  KKY14409.1 1055 LKLFEVMLpKLHERGHRVLLFSQFLDNLDIMEDFLDGLGLQHRRLDGSINAMEKQKRIDEFNapdSTLFAFLLSTRAGGVGINLATADTVIIMDPDF 1151
                  45555556899*****************8877776777************************77556677*************************** PP

                  SHHHHHHHHTTSSSTT CS
  Helicase_C   96 nvtsyiqriGRtgRag 111 
                  n+++ iq+  R++R+g
  KKY14409.1 1152 NPHQDIQALSRAHRIG 1167
                  **************97 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   1.5     2e-11   3.3e-08       7     247 ..     970    1191 ..     967    1209 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 2e-11
                  EEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH.HHHHHHHH.HHHHHHH-GGGT--TT--S-S-STTHHHHHHHT-HHHHHHHHHHHHH CS
      HDA2-3    7 ylPtpltelqkelteqivslhyedllkyvetsdsqeklslsikslticlenlslvanHPsLLvdHympkklllkelpeklaetSgKFkvlndlvnli 103 
                   lP+++t++qk +++ i+    + +   ++  d  ++ s   +sl+ +l +l+ v  HP      + ++  +       l++ S+K+k+++ ++  +
  KKY14409.1  970 ILPVTMTTVQKKVYKSILAKNPQLMKAIFSRPDGASNKSE-KHSLNNILMQLRKVLCHPFVYSRDIEERTADQDLSHRNLVDASAKLKLFEVMLPKL 1065
                  59****************9877666666666666666644.678888888*********************************************** PP

                  TTSS....EEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-..................-SEEEEEEESS---TTTS--TT-S-EEE CS
      HDA2-3  104 ierkrksslnvlvvakskkeldLiEalllGkklkikrysgeklydekkkkskdtkknsrktkeklkkkihsltihllsttrqltkdksllenikfdl 200 
                   er       vl+ ++   +ld+ E +l G +l+ +r++g     ek+k+  d+            +   s+ + +l +tr         +   +d 
  KKY14409.1 1066 HERG----HRVLLFSQFLDNLDIMEDFLDGLGLQHRRLDGSINAMEKQKRI-DE-----------FNAPDSTLFAFLLSTRAGGV---GINLATADT 1143
                  ***9....9*******************************99999999998.22...........33445688899998888744...4666778** PP

                  EEE-SST--TTSHHHHHHH---.-------EEEEEETTSHHHHHHHHT CS
      HDA2-3  201 iiafDssvdtsspsveslrtqn.rkknklpiirlvpinSieHvkLcfk 247 
                  +i +D++++++++   + r ++  +++k+ +++l++ nS e   +++ 
  KKY14409.1 1144 VIIMDPDFNPHQDIQALSRAHRiGQQKKVLVFQLMTRNSAEEKIMQVG 1191
                  **********99988888877623455699*********998777766 PP

>> DUF1087  Domain of Unknown Function (DUF1087)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.2   7.2e-09   1.2e-05      15      59 ..    1291    1338 ..    1279    1341 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 7.2e-09
     DUF1087   15 enesedpdYWekLLrhh...YEqqqeeearaLGKGKRiRKqvNYvsve 59  
                  e   +dp+ W+k ++++   +E++q  +a+aLG+GKR R+ v Y+  +
  KKY14409.1 1291 EPAGHDPNIWDKIMQERekaFEEEQRLKAQALGRGKRKRQNVDYNVGH 1338
                  47789*********986667************************8765 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1         3   4.9e+03      84     120 ..      75     111 ..      62     140 .. 0.63
   2 !   22.0   0.0   8.3e-08   0.00014       4     169 ..     739     904 ..     736     906 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3
                 ....GEEEESSS-B--.......-SEEEEEHHHHHHTH.. CS
      ResIII  84 e...igkkvsgdkkkakekdstnkkilvttiqsldadsee 120
                 e    g ++sg++ ++    s++ +++v++i+ l+a++ +
  KKY14409.1  75 EdswFGSNKSGQQVSR---VSSEVRVVVESINPLHAEEYK 111
                 2344566666666666...899999999999999998833 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 8.3e-08
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--...... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka...... 96 
                 l +yQ++ ++ +  ++   ++++++++ + G GKT+  +++   + + +k    l++vp+ + +  +++e+kk++++ +    + + + + ++      
  KKY14409.1 739 LMQYQIDGLNWIHYQW--FKQQNAILADEMGLGKTIQVISFFSTMIQDHKCWPWLVVVPNST-CPNWRREIKKWAPSIRV--VTYYGSATARRlahdye 832
                 5678888887777666..48999999**********************9999*******876.678*********99863..33333333333444666 PP

                 ..........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS..TTTHHHHHT---SEEEEEESS- CS
      ResIII  97 ...kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak.kswreilekfkeavllglTATp 169
                     ekd+  ++i+v+++++++ d      ++   ++ + + +++DE  rl+++ +++ e+l k++  ++l lT+Tp
  KKY14409.1 833 lfpGEKDDMRAHIVVSSYEAMTDDA-----ARRVISKISWQGVVVDEGQRLKSDrTQFYEALSKIRFPFKLLLTGTP 904
                 777899999****************.....88899999999************864666779999***********9 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   5.8   2.2e-07   0.00036       2      49 ..     360     415 ..     359     417 .. 0.86
   2 ?    1.6   0.1      0.17   2.7e+02      11      28 ..     405     422 ..     399     422 .. 0.84
   3 ?   -1.8   0.6       1.8   2.9e+03      15      26 ..     482     493 ..     475     497 .. 0.69
   4 ?   -3.6   0.1       6.6   1.1e+04      45      50 ..     532     537 ..     525     539 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.2e-07
                 BTTTTS..TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSS......TBSSTTT CS
         PHD   2 CavCkk..ksdeeeelvqCdgCkrwfHqkClkppleseekpeg......ewlCekC 49 
                 C vC+   +++ ++ lv+C+gC++++H+ Cl+   +++   ++        +C++C
  KKY14409.1 360 CLVCHIhgDNEVKGPLVFCQGCSDAYHKICLGNRGSRDHLVTKvgethfVLQCRRC 415
                 999999777788*********************99988888778888666678888 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.17
                 TTSCEEEETTTSCEEETT CS
         PHD  11 eeeelvqCdgCkrwfHqk 28 
                 e ++++qC +C    Hqk
  KKY14409.1 405 ETHFVLQCRRCIGIAHQK 422
                 56899******9999985 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.8
                 EEEETTTSCEEE CS
         PHD  15 lvqCdgCkrwfH 26 
                 l  C +C r+ H
  KKY14409.1 482 LFRCVNCTRAWH 493
                 556777777777 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 6.6
                 SSTTTH CS
         PHD  45 lCekCk 50 
                 +C++C+
  KKY14409.1 532 VCRECH 537
                 466664 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.7   7.7e+03       2      19 ..     118     134 ..     117     137 .. 0.76
   2 !    8.3   0.3    0.0013       2.2      18      35 ..     571     588 ..     542     592 .. 0.81
   3 !    8.8   0.0   0.00091       1.5      15      35 ..     649     674 ..     638     676 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.7
                 EEEEEEEEEEETTEECEE CS
      Chromo   2 eVerIidhrtdkdglele 19 
                  V rI++++td   +  +
  KKY14409.1 118 SVARILKKSTDNRFQ-DK 134
                 699****99998776.45 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0013
                 EEEEEEETTSTGGGTEEE CS
      Chromo  18 leYlVKWkglpysentWE 35 
                 +eYl+KWk  ++  + W 
  KKY14409.1 571 KEYLIKWKKQSHFRDVWM 588
                 6*********99888885 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00091
                 EEC.....EEEEEEETTSTGGGTEEE CS
      Chromo  15 gle.....leYlVKWkglpysentWE 35 
                  +       e +VK+kgl y+++ WE
  KKY14409.1 649 DNArvrevSEAFVKYKGLGYEDALWE 674
                 444455566889*************9 PP

>> SnAC  Snf2-ATP coupling, chromatin remodelling complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2       3.7   6.1e+03      59      65 ..     210     216 ..     191     251 .. 0.42
   2 ?    1.2   0.0      0.34   5.6e+02      19      39 ..     610     640 ..     598     674 .. 0.65
   3 ?   13.7   0.3   4.4e-05     0.072      40      68 ..    1307    1335 ..    1296    1339 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.7
                 XXXXXXX CS
        SnAC  59 kRaRkev 65 
                  R+R+  
  KKY14409.1 210 LRQREAA 216
                 3333322 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.34
                 .----SS------------.-.........- CS
        SnAC  19 kplpsRLleeseLPefyek.d.........g 39 
                 ++  +R  +e+ LPe y + d          
  KKY14409.1 610 ENQLPRMTTEDALPEDYLRvDivfdvrytnV 640
                 334589***********99533333444433 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 4.4e-05
                  -----HHHHHHHHHHHH-XXXXXXXXXXX CS
        SnAC   40 veekkeekeeldeqlygrgkRaRkevsYe 68  
                   e+  ee++ l++q  grgkR+R++v+Y+
  KKY14409.1 1307 REKAFEEEQRLKAQALGRGKRKRQNVDYN 1335
                  46677888999*****************6 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.0    0.0026       4.3       4      39 ..     357     394 ..     354     398 .. 0.83
   2 ?   -0.6   0.0       0.8   1.3e+03      12      29 ..     522     539 ..     517     540 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0026
  Prok-RING_1   4 gkkCpvCgkelkee..dDiVvCpeCgtpyHraCyekag 39 
                   + C vC+ + ++e    +V C  C   yH+ C  + g
   KKY14409.1 357 RQTCLVCHIHGDNEvkGPLVFCQGCSDAYHKICLGNRG 394
                  5789999877666666789**************87776 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.8
  Prok-RING_1  12 kelkeedDiVvCpeCgtp 29 
                  k+++e   + vC eC t+
   KKY14409.1 522 KRFEEYHRASVCRECHTS 539
                  66777777789****997 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   4.3   0.00068       1.1       2      27 ..     373     398 ..     372     416 .. 0.72
   2 ?   -3.4   0.1       4.5   7.3e+03      27      35 ..     480     488 ..     477     489 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00068
       PHD_2   2 npllsCdkCsvaVHasCYGvskesdg 27 
                  pl++C++Cs a H+ C G + + d+
  KKY14409.1 373 GPLVFCQGCSDAYHKICLGNRGSRDH 398
                 59***************998877665 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.5
       PHD_2  27 geeWlCrrC 35 
                 ++ + C  C
  KKY14409.1 480 HVLFRCVNC 488
                 555777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.49
# Mc/sec: 8742.21
//
Query:       KKY14410.1  [L=251]
Description: putative had superfamily [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-06   28.5   0.0      0.063   13.6   0.0    2.2  2  Hydrolase       haloacid dehalogenase-like hydrolase
    7.5e-06   25.9   0.0    1.3e-05   25.2   0.0    1.4  1  Hydrolase_like  HAD-hyrolase-like
     0.0014   18.7   0.0      0.046   13.8   0.0    2.1  2  HAD_2           Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.1e-05     0.063     121     179 ..      52     112 ..      14     122 .. 0.86
   2 !   13.0   0.0   1.6e-05     0.093     188     210 .]     184     206 ..     176     206 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
                 TTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHH.TTGGGESEEEEHHCES.STTTSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxx RF
   Hydrolase 121 peaaeavasLkaagievvlltgdnpetaeraanq.lGddyfdaviasdiet.vakpspegk 179
                 p + e++++L ++gi+ +l+t ++p++++++ ++ l    f++v+++d+ +  akp+ +g+
  KKY14410.1  52 PFLLELMQYLDSRGIRKGLCTRNFPAPVQHLRDNfLKGIEFEGVVTRDTPGiRAKPEGDGL 112
                 5566899**********************999995558889***************99886 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.6e-05
                 STGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 188 gkpeevamVGDgvnDaaalaaAg 210
                   +++++mVGD++ D+ a+++Ag
  KKY14410.1 184 HHGHNILMVGDSIDDLLAGRNAG 206
                 457899***************98 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   2.1e-09   1.3e-05      19      50 ..     184     214 ..     155     236 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 2.1e-09
                     --GGGEEEEES-TTTHHHHHHHCT-EEEEESS CS
  Hydrolase_like  19 sdpeevlmiGDrlatDiagAnnaGwksvLVlt 50 
                     ++ +++lm+GD+  +D+++++naG+ +vL   
      KKY14410.1 184 HHGHNILMVGDS-IDDLLAGRNAGAATVLLVN 214
                     56789*******.**************88654 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.014        83      77     141 ..      47     112 ..       4     126 .. 0.73
   2 !   13.8   0.0   7.8e-06     0.046     149     176 ..     183     210 ..     129     212 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.014
       HAD_2  77 evkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekk.KPdpevi 141
                   +p + + el+++L ++g++ g+ T +  + v++  +++     F+ +vt ++ + + KP+ + +
  KKY14410.1  47 RQRPQPFLLELMQYLDSRGIRKGLCTRNFPAPVQHLRDNFLKGIEFEGVVTRDTPGIRaKPEGDGL 112
                 4566677899*****************977777776666666667888888887765448887766 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 7.8e-06
       HAD_2 149 klkkeeviyvGDsptDieaakkagikvi 176
                 + + +++++vGDs+ D+ a+++ag  ++
  KKY14410.1 183 QHHGHNILMVGDSIDDLLAGRNAGAATV 210
                 44557899****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.51
# Mc/sec: 1494.27
//
Query:       KKY14411.1  [L=315]
Description: hypothetical protein UCRPC4_g06753 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2092.27
//
Query:       KKY14412.1  [L=309]
Description: hypothetical protein UCRPC4_g06754 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.097   12.1   0.0       0.31   10.4   0.0    1.7  2  HSP33     Hsp33 protein


Domain annotation for each model (and alignments):
>> HSP33  Hsp33 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   1.7e-05      0.31     202     246 ..      27      71 ..       4      76 .. 0.82
   2 ?   -1.6   0.1     0.078   1.4e+03     257     265 ..     239     247 ..     211     300 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 1.7e-05
                 HHHHHHSTS--EEEEEEE-EE-----HHHHHHHHHTT-CHHHHHH CS
       HSP33 202 llerlfheedvevleekpvefkCrCsrervekaLkslgkeeleei 246
                  l   f   dv+++ e + +f+C+ s+e++++  ++l++++ +++
  KKY14412.1  27 TLAASFLTPDVNITAEDSGKFDCPVSKEKIQNWVEQLDRDQRRAL 71 
                 4455566789*****************************998765 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.078
                 -TTT--EEE CS
       HSP33 257 CefCgkkYr 265
                 C +C++k  
  KKY14412.1 239 CTWCKAKHV 247
                 444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2129.68
//
Query:       KKY14413.1  [L=425]
Description: putative nad dependent epimerase dehydratase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-13   49.5   0.0    5.4e-13   49.0   0.0    1.2  1  Epimerase      NAD dependent epimerase/dehydratase family
    5.2e-05   22.5   0.0    8.8e-05   21.7   0.0    1.3  1  RmlD_sub_bind  RmlD substrate binding domain
  ------ inclusion threshold ------
      0.078   12.6   0.1       0.13   11.9   0.1    1.3  1  SPECT1         Plasmodium host cell traversal SPECT1


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0     9e-17   5.4e-13       7     228 ..      39     260 ..      38     268 .. 0.79

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 9e-17
                 TSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HHHHHHHHH....HHT-SEEEE--S.---HHHHHHSHHHHHHHHT CS
   Epimerase   7 tGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrsalerlfk....eeqpdavihlAa.vggvaassedpadfieknl 92 
                 tGfiG+ l+k++ +++   + +  ++   + a l+          ++ ++d   + +l+r+f+    + + d+v++l++  +  ++  +++     +  
  KKY14413.1  39 TGFIGRFLAKYIHDNHLASHLRIVDKVLPQLAYLAPEfqescasdNFLQADASREPSLQRIFEpppdRDHWDYVFNLGGeTALSQTHEIYKL----RSY 133
                 8***************666666666556666666666899*********************9644435699******664444444444444....577 PP

                 HHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHH CS
   Epimerase  93 qgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipalir 191
                  ++++l +aa k++vk ++ +s+  vY +     k+e+    +lkp    + aKl  e  + ++    gl+ iilrl ++yG++  ++    +  ++ r
  KKY14413.1 134 DLSMTLGQAAAKHKVKAFVEASTGMVYAPTRAA-KKEND---KLKPWLKLSKAKLQTEADLSKI---EGLHLIILRLAHVYGEY--DNGYIAKALCMGR 223
                 7***************************99995.88888...8999999999999999988876...7899*************..3333333333444 PP

                 HHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHH CS
   Epimerase 192 kilegkqevtllgdgtalRdflyveDvaeaillvleh 228
                   +e   e++ l + + +   ++v D+++a+++++e 
  KKY14413.1 224 VYKELDRELKWLWTQDLRINTVHVLDAVRALWTAAEY 260
                 4444335778777899999***************997 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.5e-08   8.8e-05      82     164 ..     136     219 ..      70     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.5e-08
                    HHHHHHHHHHCT-.EEEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHH.H-SSEEEEEE-SEESSSSS-HHHHHH CS
  RmlD_sub_bind  82 vealAeaaaavga.lLihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavla.agkkalivRtswvygekgknfvktml 164
                    +++l +aaa++++  ++  St  V+  +++   +e+d+ +P     ++Kl+ E    + +g + +i+R + vyge+++ ++++ l
     KKY14413.1 136 SMTLGQAAAKHKVkAFVEASTGMVYAPTRAA-KKENDKLKPWLKLSKAKLQTEADLSKiEGLHLIILRLAHVYGEYDNGYIAKAL 219
                    6788899999888359*********999554.69**********************99677788999***********9988765 PP

>> SPECT1  Plasmodium host cell traversal SPECT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.2e-05      0.13      56     110 ..     148     202 ..     128     233 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.2e-05
      SPECT1  56 leefvenskGvifnsseekkkvekdkfkkvcdlilkkvkklvelskinkyr.iilk 110
                 ++ fve s G+++  + +  k e+dk+k    l   k+++  +lski+  + iil+
  KKY14413.1 148 VKAFVEASTGMVYA-PTRAAKKENDKLKPWLKLSKAKLQTEADLSKIEGLHlIILR 202
                 789********996.667777899***********************987624554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3433.98
//
Query:       KKY14414.1  [L=846]
Description: putative hsp90-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-22   78.4   0.0    1.4e-21   77.0   0.0    1.7  2  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    4.6e-21   75.1   0.4      1e-20   74.0   0.4    1.6  1  Response_reg  Response regulator receiver domain
    6.9e-05   23.1   0.0       0.33   11.2   0.0    3.1  3  PAS_4         PAS fold
    0.00013   21.9   0.0    0.00048   20.1   0.0    2.0  1  PAS           PAS fold
    0.00025   20.9   0.0    0.00071   19.4   0.0    1.7  1  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik
     0.0004   20.3   0.0     0.0016   18.4   0.0    2.1  1  PAS_8         PAS domain
    0.00062   19.8   0.0     0.0024   17.9   0.0    2.1  2  HisKA         His Kinase A (phospho-acceptor) domain
     0.0023   18.1   0.0      0.044   14.0   0.0    3.2  3  PAS_9         PAS domain
  ------ inclusion threshold ------
      0.013   15.8   0.2      0.028   14.7   0.2    1.6  1  PAS_3         PAS fold


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       8.3   1.6e+04      36      51 ..     118     133 ..     104     147 .. 0.70
   2 !   77.0   0.0   7.2e-25   1.4e-21       2     110 ..     522     667 ..     521     669 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 8.3
                 TEEEEEEEESSSSSTT CS
   HATPase_c  36 ddlvisveDnGiGipk 51 
                 + + ++ eD+G+ i  
  KKY14414.1 118 GAIGVRLEDDGKPIAL 133
                 4667888999988765 PP

  == domain 2  score: 77.0 bits;  conditional E-value: 7.2e-25
                 HHHHHHHHHHHHHHHHHHH..HSTTTEEEEEEEE......................EE............TEEEEEEEESSSSSTTHHHTGTCSTTCH. CS
   HATPase_c   2 dekrLrqiisnlvdNavkf..atkageieveika......................se............ddlvisveDnGiGipkedlkklfekfsq. 63 
                 d +rL q+++nl +Na+kf  a+ + +i+v++ a                      ++             +l++ v+D+G+G+++e++k lf++f+q 
  KKY14414.1 522 DTSRLLQVLINLYTNAIKFtaAGVTRQIQVSLGAsrqpptleeygvhwlstekgkvKDpttamewgdgeqLYLSFAVQDTGRGMNEEEMKSLFQRFQQa 620
                 789****************443366688886665555555554555544444443301334444555656899999**********************9 PP

                 HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEEEEEEES CS
   HATPase_c  64 ddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttftftlpl 110
                 +  t +++gg+GlGl+i++ l++  gGei v s p++G+tf f+++ 
  KKY14414.1 621 SPRTHTQYGGSGLGLYIARLLTNIQGGEIGVVSVPEKGSTFAFYIKV 667
                 99999******************999*****************9986 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.4     5e-24     1e-20       1     111 [.     712     838 ..     712     839 .. 0.95

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 5e-24
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH...........ESEEEEESSCSSSEHHHHHHHHHHCT......TTSEEEEEESS CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek...........vdlillDinmpgmdGlellkeireed......pelpviiltah 80 
                   vl+v+D+ +++++lr++l++ +  +v++a++g+e ++ lk+ +             l+l+D++mp m+Gl +++eir+ +      +++p+i++ta+
    KKY14414.1 712 VLVVEDNVVNQRVLRRQLQNLDW-TVHVANNGQESIDFLKTTQfwkgneitgtpLTLVLMDVEMPVMNGLMATREIRRLQsdqlivEHVPIIAITAN 807
                   89*********************.***************9888889999999999*********************999977777777********* PP

                   TSHHHHHHHHHCTESEEEESSG-HHHHHHHH CS
  Response_reg  81 seeedavealkagaddflsKpfdpeeLlkal 111
                   + +e++    + g+dd++sKpf++ eL++++
    KKY14414.1 808 ARMEQVAVTRESGMDDVVSKPFRIPELVAKV 838
                   ****************************998 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00016      0.33      76     109 ..      10      43 ..       2      44 .. 0.90
   2 ?   -2.7   0.0       3.5     7e+03      48      74 ..     136     162 ..     113     175 .. 0.68
   3 !    8.3   0.0    0.0014       2.7       2      72 ..     256     328 ..     255     335 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00016
       PAS_4  76 geerhyelrllPlrdesGevigvlvisrDiTerr 109
                  eer++ l +lP++ ++G v+g+++ ++D+Te++
  KKY14414.1  10 LEERYFTLGMLPILGDDGSVQGFYEPLTDVTEEH 43 
                 589*****************************87 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.5
       PAS_4  48 daarleralrrvlegeepiefleelll 74 
                   +++ r+ +++ + +e+i+f + ++l
  KKY14414.1 136 EDDNFKRYFQQACQLGEFITFDIPPHL 162
                 457788888888888888888777766 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0014
       PAS_4   2 dslpdalavldpdgrvlyaNaaaaelfgappeellGktla..ellpeedaarleralrrvlegeepiefleel 72 
                 +  p++ + +  dg +lyaN+++ el  +   +   +++   e   ++ ++  +  ++ +++++++ +f++ l
  KKY14414.1 256 NVAPVGAYLITMDGEILYANPTWYELTDYNNYQNEQSPMSwmEAIADDFQDTMRKEWELLVTEHRSRSFEIRL 328
                 67899*****************888777777777777777777777778888888888888888877777665 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.4e-07   0.00048       6      82 ..     254     338 ..     251     371 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.4e-07
                 HHHHSSSEEEEEETTSBEEEECHHHHHHHSSTH.HHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEEC.......T CS
         PAS   6 ileslpdpifvvDedgrilyvNaaaeellGlsr.eevlgkslldliheeddaelaelleqlleqgeesrageisfkl.......r 82 
                 +l+ +p++  ++  dg+ily+N+++ el+ ++  +   + +  ++ + +d +++ ++ ++ll + ++sr++ei++k+       +
  KKY14414.1 254 MLNVAPVGAYLITMDGEILYANPTWYELTDYNNyQNEQSPMSWMEAIADDFQDTMRKEWELLVTEHRSRSFEIRLKKewkgicnV 338
                 78889*****************************999999999********************************9976665552 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.5e-07   0.00071      34      99 ..     594     660 ..     583     693 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.5e-07
  HATPase_c_3  34 geivieDdGkGmseeelknalr.latsskeakrkstslGkkGiGlklAsl...slgkkltvitkkegess 99 
                   ++ ++D G Gm+eee+k+ ++ + + s++   ++t++G  G+Gl  A l    +g ++ v++  e  s+
   KKY14414.1 594 LSFAVQDTGRGMNEEEMKSLFQrFQQASPR---THTQYGGSGLGLYIARLltnIQGGEIGVVSVPEKGST 660
                  5789***************88626666666...89*********99997622246777777776554333 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     8e-07    0.0016       4      63 ..     252     315 ..     249     320 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8e-07
       PAS_8   4 ralfesspdgiavvd.lgdrivdvNqaalellGys....adlkgellgqllpvlrplledaeqll 63 
                 +++++ +p+g  ++  +g+ i+++N++++el+ y+    +++  + +  + +++++ ++  ++ll
  KKY14414.1 252 KGMLNVAPVGAYLITmDGE-ILYANPTWYELTDYNnyqnEQSPMSWMEAIADDFQDTMRKEWELL 315
                 678999***9999885666.*************99998555555555688888888888555554 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.2e-06    0.0024       2      26 ..     395     419 ..     394     439 .. 0.85
   2 ?   -3.8   0.0       7.1   1.4e+04      15      26 ..     763     774 ..     763     779 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaea 26 
                 ++ f+ + +HE+r+PLsail  a+ 
  KKY14414.1 395 QENFIDMTSHEMRNPLSAILQSADS 419
                 568999*************988765 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 7.1
                 HHHHHHHHHHHH CS
       HisKA  15 tPLsailgnaea 26 
                 tPL+ +l+ +e+
  KKY14414.1 763 TPLTLVLMDVEM 774
                 8*****987775 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.5   8.9e+03      84     104 .]      21      41 ..      15      41 .. 0.88
   2 !   14.0   0.0   2.2e-05     0.044       4      70 ..     262     330 ..     259     373 .. 0.64
   3 ?   -0.8   0.0      0.95   1.9e+03      28      72 ..     481     522 ..     472     544 .. 0.62

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.5
       PAS_9  84 pvkdddgelvgiivilrDite 104
                 p+  ddg ++g+   l+D+te
  KKY14414.1  21 PILGDDGSVQGFYEPLTDVTE 41 
                 78889999999999999*998 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 2.2e-05
       PAS_9   4 ilidnpdgrilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrk..kerevevvlir 70 
                   ++++dg+ilyaN+++ +l+ y+  +  + +++++ + +++ ++++r+ +e + +    r++e+ l +
  KKY14414.1 262 AYLITMDGEILYANPTWYELTDYNNYQNEQSPMSWMEAIADDFQDTMRKEWELLVTehRSRSFEIRLKK 330
                 44555*****************99444445554444433777777777777666665555555555554 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.95
       PAS_9  28 peevlgksitdlf.vtdpeanerlraaleqgrkkerevevvlirkn 72 
                 p +++g+s++++  + ++++++ + +a      +++e ev  ++ +
  KKY14414.1 481 PLALIGQSLRMFAaELESNDAQMETQAEA----SFQELEVSWVKMD 522
                 55789999999993333333333333333....4555555555554 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.2   1.4e-05     0.028       1      61 [.     271     331 ..     271     342 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-05
       PAS_3   1 iiyvserveeilGyspeellgkveswldlvhpeDrervrealqealkkgepyegeyRirrk 61 
                 i+y++++++e+++y   + ++++ sw++++  + ++ +r++++ ++++ ++ ++e+R+++ 
  KKY14414.1 271 ILYANPTWYELTDYNNYQNEQSPMSWMEAIADDFQDTMRKEWELLVTEHRSRSFEIRLKKE 331
                 589****************************999*******99999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.50
# Mc/sec: 5079.89
//
Query:       KKY14415.1  [L=205]
Description: hypothetical protein UCRPC4_g06735 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1361.03
//
Query:       KKY14416.1  [L=311]
Description: putative nudix domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-11   45.0   0.0    2.9e-11   43.5   0.0    1.8  2  NUDIX      NUDIX domain
  ------ inclusion threshold ------
      0.059   13.6   0.8       0.13   12.5   0.8    1.5  1  PHINT_rpt  Phage-integrase repeat unit
      0.067   13.0   0.5        2.3    8.2   0.3    2.6  2  Sorb       Sorbin homologous domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   4.9e-15   2.9e-11       2     113 ..      42     175 ..      41     192 .. 0.65
   2 ?   -1.7   0.0      0.47   2.8e+03      75      90 ..     198     218 ..     189     242 .. 0.64

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 4.9e-15
                 EEEEEEEEEEETTSE...EEEEEES..SSSTTTE.ESSEEECBTTSHHHHHHHHHHHHHHSEEE.EEE...EEEEEEEEEEEEEEEEEE.....EEEEE CS
       NUDIX   2 lrravgvvllnekge...vLlvrrs..kkpfpgW.elPgGkvepgEtpeeAArREleEEtGlea.ell...ellgrlhylapydgpygd.....eheil 85 
                 +r+av ++l+ +++    ++l+ r+   +  +g  ++PgG+ e +Et+ ++ArRE++EE+Gl+a ++     ++ ++ +++p +   ++     +  +l
  KKY14416.1  42 RRAAVLLLLFADRRGdlrIVLTMRAstLSSYSGHaAFPGGRAEGDETAVQTARREAAEEIGLPAdDNKlpyPFTIEHLCELPANLARTElvvrpCVAFL 140
                 678888887777755699888888857555555426*******999999*************9977665652222333334444443335554566666 PP

                 EEEE......EEECSGCSST.STTTEEEEEEEEHH CS
       NUDIX  86 yvfl......eevegelepn.denevsevrwvple 113
                 + +       ++v+++l p+ d +ev++v   p++
  KKY14416.1 141 HSYDgqtgvdASVDETLIPRlDAKEVAAVFSAPFH 175
                 66666666556666666666666666666555555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.47
                 EEEEEE...EEEEEEEEE..E CS
       NUDIX  75 dgpygd...eheilyvfl..e 90 
                 +g ++d   +++ +++f    
  KKY14416.1 198 KGAWTDwhqTRWRMHYFYvpI 218
                 455666666888888887442 PP

>> PHINT_rpt  Phage-integrase repeat unit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.8   2.2e-05      0.13       9      28 ..     186     205 ..     181     207 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.2e-05
   PHINT_rpt   9 DpkLpssPekiYaedwegWs 28 
                 D  Lp++P++ Y+  w++W 
  KKY14416.1 186 DASLPERPQDWYKGAWTDWH 205
                 889****************7 PP

>> Sorb  Sorbin homologous domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.035   2.1e+02       6      15 ..     150     159 ..     145     164 .. 0.86
   2 ?    8.2   0.3   0.00038       2.3      24      40 ..     191     207 ..     187     210 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.035
        Sorb   6 igsvdevGiP 15 
                 + svde +iP
  KKY14416.1 150 DASVDETLIP 159
                 78******** PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00038
        Sorb  24 drskDWYktmFKqiHkl 40 
                 +r++DWYk  + + H++
  KKY14416.1 191 ERPQDWYKGAWTDWHQT 207
                 89******999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2207.49
//
Query:       KKY14417.1  [L=405]
Description: putative serine threonine protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-34  119.3   0.0    2.2e-19   69.8   0.0    2.8  2  Pkinase      Protein kinase domain
    1.7e-11   43.9   0.0    1.4e-09   37.6   0.0    3.3  1  Pkinase_Tyr  Protein tyrosine kinase
      0.001   19.1   0.1     0.0086   16.0   0.1    2.3  3  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   7.9e-16   4.7e-12       2     119 ..       4     142 ..       3     144 .. 0.94
   2 !   69.8   0.0   3.8e-23   2.2e-19     120     259 ..     214     384 ..     210     387 .. 0.78

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 7.9e-16
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE.................SSEEEEEEE--TT CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee.................kdelylvleyveg 82 
                 + l+ lGeG+f+ Vy + +++t++ +A+Kki+    +++  +++l+E++    ++ +++i++ ++   +                 ++++y++l y + 
  KKY14417.1   4 KLLRLLGEGGFSYVYLVQDTATSQLYALKKIRCPFGQESV-SQALKEVEAYTLFSsSSYIIHSIDHSVQtdsgikisgigndnsagSKTVYILLPYYRR 101
                 67899****************************9988877.59**********99999****998777679**************************** PP

                 EBHHHHHH....HHSS--HHHHHHHHHHHHHHHHHHHHTTE CS
     Pkinase  83 geladlle....rkgslseeeakkiakqilegleylHskgi 119
                 g+l+d+++    ++++++e+++  ++  ++++l+ +H+ ++
  KKY14417.1 102 GNLQDAINanlvNHTKFPENRLMILMLGVAKALKDMHQYKV 142
                 ********99999999*********************9987 PP

  == domain 2  score: 69.8 bits;  conditional E-value: 3.8e-23
                 E-SS-SGGGEEEETTTE.EEE-SGTTSEESSSSCS..........BCTTTSCGGGS-HHHH...TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHH CS
     Pkinase 120 iHrDlKpeNiLidekge.lKitDFGlakelesssk..........ltsfvgtseYlAPEvl...keneyskkvDvWslGvilyelltgkppfsgekgke 204
                  HrD+Kp Ni+i+++g+   ++D+G  +      +          +  +  t  Y+APE+    +++ +++kvD+Ws G++ly  l gk pf+++++++
  KKY14417.1 214 AHRDIKPGNIMISDSGNdPILMDLGSLAPSPLPITsrslalavqdTAAEHSTMPYRAPELFdvkTGSVIDTKVDIWSFGCTLYACLVGKSPFEARSEET 312
                 7************7666699*****8665544444567899999999999**********998667778************************655555 PP

                 HHHHHHHTHHHHHHHCTSHH...HHHTTS.......................-HHHHHHHHHHT-SSGCCSTTHHHHH CS
     Pkinase 205 kvekeldqlekilkilgetkeklpeasei.......................seeakdllkkllkkdpkkRltaeell 259
                   +        i+ + g++++  + +++                        se+++d+++++l+++p +R+ ++el+
  KKY14417.1 313 GGSLS------ICVLGGDWRFPDEGRDKKgkarqgqpihqngeatgpnesviSENVRDVVRRCLQVEPAERPDIDELI 384
                 33333......33333344444443333355556677788888888888888********************999986 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   2.3e-13   1.4e-09       3     258 ..       5     386 ..       3     387 .. 0.78

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 2.3e-13
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSS.................EEEEEE- CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeep.................llivtey 82 
                  l + lGeG f+ V+  + +     +++  a+K+++    +e+ ++ l+e++  + + +   i++ +   +++++                 ++i++ y
   KKY14417.1   5 LLRLLGEGGFSYVYLVQDT----ATSQLYALKKIRCPFGQESVSQALKEVEAYTLFsSSSYIIHSIDHSVQTDSgikisgigndnsagsktVYILLPY 98 
                  6778999999999887666....66777788888887777777777777777777766666766666555333334444445555556666******* PP

                  -TTEBHHHHHHHT.............................................................................CTTTSBHH CS
  Pkinase_Tyr  83 vkgGdLlkfLrkk.............................................................................ekekltlk 103
                   + G+L++ ++++                                                                             ++e+l   
   KKY14417.1  99 YRRGNLQDAINANlvnhtkfpenrlmilmlgvakalkdmhqykvrdganrgkakavrdeaaaedrdaarranknkrremraepqdgtdhdAEEPLMEG 196
                  *************************************************************************************9999888888888 PP

                  HHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE....TTEEEE-STT.THEET...TTSSEE...EETTSSTSGGGGS-HHHHHHSE...EEHHHH CS
  Pkinase_Tyr 104 dllsfalqvAkGmeyLeskklvHrdlaarNvLlse....nkvvkisDfG.Lardi...ekddey...vkkeeaklpvkWmapEslkekk...ftsksD 187
                  ++++    vA+G      + + Hrd+   N+++s+         + D G La +    ++++     +++  ++  + + apE ++ k+   + +k D
   KKY14417.1 197 EVMRAQEGVAEG----GLRAYAHRDIKPGNIMISDsgndP---ILMDLGsLAPSPlpiTSRSLAlavQDTAAEHSTMPYRAPELFDVKTgsvIDTKVD 287
                  888888889988....5699**************965440...4455553332211112222223335556667889999****998877779***** PP

                  HHHHHHHHHHHHTTSSGT...........................TTTSHHHHHHHHHHTTEES-BB..TTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 188 vWsfGvllwEiftlgesp...........................ypglkneevleklkegkrlekp..ekcpeelyelmkkcweedpeeRptfselv 256
                  +WsfG +l+  +  g+sp                             +  +++  + ++++ + + p  + ++e++ +++++c++ +p+eRp++ el+
   KKY14417.1 288 IWSFGCTLYACLV-GKSPfearseetggslsicvlggdwrfpdegRDKKGKARQGQPIHQNGEATGPneSVISENVRDVVRRCLQVEPAERPDIDELI 384
                  *********9887.****999999999999999999999988876444444455666655555444400457899********************998 PP

                  HH CS
  Pkinase_Tyr 257 ek 258
                  e 
   KKY14417.1 385 EL 386
                  75 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.22   1.3e+03      10      48 ..      15      57 ..       7      69 .. 0.80
   2 !   16.0   0.1   1.4e-06    0.0086      98     199 ..     130     243 ..     110     245 .. 0.69
   3 ?   -1.8   0.0       0.4   2.4e+03     126     161 ..     362     395 ..     344     400 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.22
                SCEEEEEEETT..--EEEEEE-TT...S-HHHHHHHHHHHHHHH CS
         APH 10 snrtylvttpa..gryvlrrnppa...raaeeirrevallrlLa 48
                s  +ylv+++a  + y+l+ ++ +   ++  ++ +ev+ ++l++
  KKY14417.1 15 SY-VYLVQDTAtsQLYALKKIRCPfgqESVSQALKEVEAYTLFS 57
                44.99999999544999*99888777889999999999888776 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.4e-06
                 HHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHH.................HHHHHHHH--SSS-EEEE-SS-SGGGEE CS
         APH  98 lgeflaalhqvdpaalpladflaqdlellrqlesatarllaselldlleeleeq.................vlaalaallpgelptvllHgDlhpgNll 179
                 ++ +l+++hq   ++   ++ ++  +++++ +++  a+++a +++    e++++                 v++a +  + g + +   H+D++pgN++
  KKY14417.1 130 VAKALKDMHQYKVRDGANRGKAKAVRDEAAAEDRD-AARRANKNKR--REMRAEpqdgtdhdaeeplmegeVMRAQEGVAEG-GLRAYAHRDIKPGNIM 224
                 57889999999766666666665544444444444.3444444444..3444444566666666667666666666655554.8899************ PP

                 EC...TTEEEEE---TT-EEE CS
         APH 180 vd.pddgrvtGviDfedaglg 199
                 +  ++++++  + D++ + ++
  KKY14417.1 225 ISdSGNDPI--LMDLGSLAPS 243
                 **9999999..9998876665 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.4
                 HHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH-- CS
         APH 126 lrqlesatarllaselldlleeleeqvlaalaallp 161
                  r++++++ +  ++e +d + el e +++++ ++lp
  KKY14417.1 362 VRDVVRRCLQVEPAERPD-IDELIE-LIEKVVDELP 395
                 678888998888888888.555555.5544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.50
# Mc/sec: 2415.89
//
Query:       KKY14418.1  [L=765]
Description: putative protein transporter sec23 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-79  264.8   0.0    9.7e-79  264.4   0.0    1.2  1  Sec23_trunk     Sec23/Sec24 trunk domain
    4.2e-30  104.3   0.0    9.4e-30  103.2   0.0    1.6  1  Sec23_BS        Sec23/Sec24 beta-sandwich domain
    1.5e-23   82.5   0.0    3.7e-23   81.3   0.0    1.7  1  Sec23_helical   Sec23/Sec24 helical domain
    1.3e-15   57.1   4.4    2.3e-15   56.3   4.4    1.4  1  zf-Sec23_Sec24  Sec23/Sec24 zinc finger
    7.3e-12   45.0   0.0    3.5e-11   42.8   0.0    2.1  2  Gelsolin        Gelsolin repeat
  ------ inclusion threshold ------
       0.05   13.0   0.6       0.12   11.7   0.1    1.8  2  Vps36-NZF-N     Vacuolar protein sorting 36 NZF-N zinc-finger


Domain annotation for each model (and alignments):
>> Sec23_trunk  Sec23/Sec24 trunk domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.4   0.0   3.2e-82   9.7e-79       1     243 []     127     394 ..     127     394 .. 0.98

  Alignments for each domain:
  == domain 1  score: 264.4 bits;  conditional E-value: 3.2e-82
                  SS--EEEEEEE-SHHHHHHTHHHHHHHHHHHHCTTSSTSTT-EEEEEEESSSEEEEETSTTS.......SSSEEEEECHTTSCC.............. CS
  Sec23_trunk   1 pkppvflFviDvsleaikegelkalkeslkqsLdllPeepralvglitfdsvvhffelksel.......rqpkelvvsdlqdvf.............. 77 
                  p pp+f++v+D+++e   e++l+alkesl +sL+llP  p+alvgl+tf+++ +++e+++++       r++k++ ++++q+++              
   KKY14418.1 127 PAPPIFVYVVDTCQE---EDSLQALKESLVMSLSLLP--PNALVGLVTFGTMAQVHEIGYTEcaksyvfRGSKDYPAKQVQEMLglstagvrpnvpqq 219
                  78*************...*******************..*********************************************************** PP

                  .......SSTSSSSSEETTTTHHHHHHHHHHHHH.HSTT-TTC-----HHHHHHHHHHHHCHCT..S-EEEEEEESS---SSTTTSS-SBTTS...CC CS
  Sec23_trunk  78 .......lpladrlLvplseseavledlLeelpe.mfavtagkrperalgpalkaavellkave..tggkiivfvgslptvgaggklksrede...sl 162
                         +  a r+L+p++++e++++++Le++++ +++v++++r  r++g+al++av+ll++++  +g++i++f+g+++t g+g+++  +++e   s+
   KKY14418.1 220 pgrppppMGAAARFLLPVQQAEFQVTNVLEQMQRdPWPVANDRRALRCTGVALSVAVGLLETSFqnAGARIMLFAGGPATEGPGMVVGPELREpirSH 317
                  ****9877777**************************************************99999*************************999**** PP

                  TSSTTCHHCHSCSSSCHHHHHHHHHHHCTEEEEEEEECSS--SHHHHTHHHHTTT-EEEEETTTCCHHHHHHHHHHHHHHH CS
  Sec23_trunk 163 ldidkekaklvkkadkfYkkLakecvkqgisvDlFlfsldyvdlaelkqlaeltgGqvvlydsFsaekdasklkqdlkrvv 243
                  +did++++k++kka kfY++Lak+++++g+ vD+F+++ld+v+l+e+k l+++tgG+++l+dsF+    +s++kq++ rv+
   KKY14418.1 318 HDIDRDNIKYFKKAVKFYDTLAKRTAHNGHIVDIFVGCLDQVGLLEMKGLPNSTGGHMILTDSFT----SSQFKQSFVRVF 394
                  *****************************************************************....*********986 PP

>> Sec23_BS  Sec23/Sec24 beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.0   3.1e-33   9.4e-30       1      95 [.     405     509 ..     405     510 .. 0.92

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 3.1e-33
                 EEEEEEEEEE-TTEEEEEEESSSEEC....STBESSEESECSESEEEEEEEETT--EEEEEEE......SSBTCTT.SEEEEEEEEEEEETTSEEEEEE CS
    Sec23_BS   1 gfnatlevrtSkelkvsgliGncvsl....snvsekeiGeggtsewklcsldpdstlavyfdi......deklksg.kqayiQfatlYthssgerrlRV 88 
                 gfna+lev t+kelkv+gliG++vsl    ++v e+e+G+g+ts+wk+c +dp+ ++++yf+i      + ++++g ++ ++Qf+t Y+hssg+++lRV
  KKY14418.1 405 GFNASLEVITTKELKVTGLIGHAVSLnkksPSVGETECGIGNTSSWKMCGIDPTASYGIYFEIanqggpT-PMQQGpQRGMMQFLTYYQHSSGQYHLRV 502
                 79************************88876899*****************************9999964.44444499******************** PP

                 EEEEEEE CS
    Sec23_BS  89 ttvalpv 95 
                 tt+a+++
  KKY14418.1 503 TTMARNL 509
                 ***9986 PP

>> Sec23_helical  Sec23/Sec24 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   1.2e-26   3.7e-23       1     102 [.     523     621 ..     523     622 .. 0.96

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 1.2e-26
                    -HHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHHHHHHHH-------------GGGTTHHHHHHHHHTSTTTS-.-TT--HHHHHHHHHHHHH CS
  Sec23_helical   1 DqeavtvllakqaidkalesgladarealdtslvdllsayrkvgasgsspsqlqlpeslklLPlyilallKspafrg.gnsvpaDervfalsllls 95 
                    Dqea++vl+++ a+ ka+  +  d+ +++d+ l++l+s++ ++ ++  +p +++l +++ l+P+++++l++s+ f++ +n++p De++f+++ l++
     KKY14418.1 523 DQEAAAVLMSRIAVFKAEVDDGPDVLRWVDRMLIRLCSRFADYRKD--DPTSFRLEKNFTLYPQFMFHLRRSQ-FLQvFNNSP-DETAFYRHVLNH 614
                    9*****************99************************99..9************************.8888*****.***********9 PP

                    --HHHHH CS
  Sec23_helical  96 lpvdqll 102
                    + v ++l
     KKY14418.1 615 EYVGDSL 621
                    9887765 PP

>> zf-Sec23_Sec24  Sec23/Sec24 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   4.4   7.8e-19   2.3e-15       1      39 []      60      99 ..      60      99 .. 0.99

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 7.8e-19
  zf-Sec23_Sec24  1 PirCrr.CraylNpfckidfggkrwiCnfCnhknevppeY 39
                    P+ C++ Cra+lNpf+++d +++ wiC+fC ++n++pp+Y
      KKY14418.1 60 PVTCKQpCRAVLNPFANVDVRARIWICPFCLQRNPLPPHY 99
                    99*************************************9 PP

>> Gelsolin  Gelsolin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.89   2.7e+03      28      50 ..     186     211 ..     170     227 .. 0.80
   2 !   42.8   0.0   1.2e-14   3.5e-11       7      76 .]     640     724 ..     634     724 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.89
                 EEEEEEHTT...SHHHHHHHHHHHHH CS
    Gelsolin  28 tiflWiGke...ssqeeknfaadlaa 50 
                 + ++++G++   + q +++++ ++a 
  KKY14418.1 186 KSYVFRGSKdypAKQVQEMLGLSTAG 211
                 679999*9999999999999988775 PP

  == domain 2  score: 42.8 bits;  conditional E-value: 1.2e-14
                 EBSSSGGGEETTSEEEEEESS........EEEEEEHTT..SHHHHHHHHHHHHHHHH.....HCTTTTTSEEEEEETTHHHHHHH CS
    Gelsolin   7 vvklsssslesgdcyLLdngf........tiflWiGke..ssqeeknfaadlaaeld.....seerfplpeliredqgkeparFl 76 
                 +v+l+s s+++  ++LLd++f        t++ W++++  +++ ++nf+  l+a+ +      ++rfplp++i +d g+++arFl
  KKY14418.1 640 PVLLDSASIQPTHILLLDTFFqilifhgeTMAEWRKAGyqDQEGYENFKTILEAPKEdarelVQDRFPLPRFIICDAGGSQARFL 724
                 89*************************************9999*****************************************7 PP

>> Vps36-NZF-N  Vacuolar protein sorting 36 NZF-N zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   4.1e-05      0.12       8      35 ..      82     109 ..      75     110 .. 0.82
   2 ?   -2.5   0.0       1.1   3.3e+03      38      45 ..     452     459 ..     451     461 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.1e-05
  Vps36-NZF-N   8 atWvCpICsfsNevpsnfdpnastplPp 35 
                  + W+Cp C   N++p  ++  ++t +Pp
   KKY14418.1  82 RIWICPFCLQRNPLPPHYKDISETAIPP 109
                  56**************999866777775 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.1
  Vps36-NZF-N  38 aCGvkpdl 45 
                  +CG+ p+ 
   KKY14418.1 452 MCGIDPTA 459
                  7***9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.51
# Mc/sec: 4482.87
//
Query:       KKY14419.1  [L=526]
Description: putative dna primase large subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-85  284.5   0.0    1.5e-84  283.6   0.0    1.4  1  DNA_primase_lrg  Eukaryotic and archaeal DNA primase, large s
  ------ inclusion threshold ------
      0.058   13.4   1.9        1.5    8.8   0.1    3.3  3  Ribosomal_L29    Ribosomal L29 protein


Domain annotation for each model (and alignments):
>> DNA_primase_lrg  Eukaryotic and archaeal DNA primase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.6   0.0   1.6e-88   1.5e-84       2     266 .]     215     500 ..     214     500 .. 0.98

  Alignments for each domain:
  == domain 1  score: 283.6 bits;  conditional E-value: 1.6e-88
                      EEEEEHHHHHHHTT-GGS-EETTEEEE-HHHHHHHHHHHHHHHHHH..........HHGGGSSS---HHHHHHHCT--................ CS
  DNA_primase_lrg   2 fykvpfedvldlvkrrrvllkkGyaylpkeeleslllekfrkrlekalestkeslpeleeeikederekleellealsesyvaed......vqe 89 
                      ++kv++++v++lv+ r ++++kG+ay+p++e+ s+++++f++rle++le t+++lp+l    +ed+r  l+++l++ls+++ + d         
       KKY14419.1 215 WFKVDWTRVPELVEYRTIFIRKGKAYVPIKEQTSMVITEFKNRLERGLELTSRALPRL----DEDDR--LTPILNHLSKNFATPDssfsdsDAS 302
                      89********************************************************....*****..************9999999887677 PP

                      ...TTSSTTGGSHHHHTT--HHHHCCHHHHCCCSS--CHHHHHHHHHHHHCT--CHHHHCCCHCHST...HHHHHHHTHCHCHHHCC-STT--- CS
  DNA_primase_lrg  90 eedskisaknidklakesfPpCmrelleglkknghlkhegrlqltlFlkdiglsldeilelwkeaftr.teekFdkeyrynirhnyGkegkrtn 182
                        ++ i+a +id+l+ ++fP+Cmr+l+++l+kn+hlkh grlq+tlFlk+igl+l+++l +w+++f+  t++ F+keyryn+rh+yG++g++tn
       KKY14419.1 303 VPGAPINAASIDNLS-QHFPLCMRNLHMTLRKNSHLKHFGRLQYTLFLKGIGLNLEDCLIFWRQSFKLiTDDTFNKEYRYNVRHAYGDVGGDTN 395
                      778999********9.9***************************************************************************** PP

                      .....-----HHHHHHS....TT---S-HHHH..HHHHHHHHHHTT...HHHHHHHHHHHHTT.HHHHHHHHHHHHHS..............-T CS
  DNA_primase_lrg 183 .....yspysCekiltkpppgkgdahgCpfrh.dpdklktlLqeyg.lseediedilesvkegeyqvaCtkvFelthk..............ce 255
                           yspysC+kilt+ ppg g+ahgCp+rh + d+l++lLq +g +++e ++ + e+v+++++++aC++vFe  hk               e
       KKY14419.1 396 rrgrgYSPYSCQKILTEHPPGPGEAHGCPYRHfSVDNLTSLLQATGvNDREVLRGVKEDVEKKRFHIACNRVFEYAHKseikkvkdegiwgpAE 489
                      **********************************************9999999***************************************99 PP

                      TT-SSCHHHCC CS
  DNA_primase_lrg 256 rdeikhPlqYy 266
                       d+i hP++Y+
       KKY14419.1 490 LDTIVHPNTYF 500
                      99********9 PP

>> Ribosomal_L29  Ribosomal L29 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.053   4.7e+02      25      40 ..      38      54 ..      34      56 .. 0.86
   2 ?    0.2   0.0     0.084   7.5e+02       3      26 ..      89     112 ..      88     119 .. 0.84
   3 ?    8.8   0.1   0.00017       1.5       8      29 ..     147     168 ..     146     173 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.053
                   HHHHHHHT.SSS-CHHH CS
  Ribosomal_L29 25 Lrfqkatg.qlenpsri 40
                     fq+a+  ql+ p+r+
     KKY14419.1 38 QQFQHASYkQLDYPHRL 54
                   689***999******97 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.084
                    HHHS-HHHHHHHHHHHHHHHHHHH CS
  Ribosomal_L29   3 lrelsdeeLkeklkelkkeLfnLr 26 
                    +r+++ +e  e l+ l k+++ L 
     KKY14419.1  89 FRNKTPKETAEHLEPLLKKYLPLS 112
                    69************9999988765 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00017
                    HHHHHHHHHHHHHHHHHHHHHH CS
  Ribosomal_L29   8 deeLkeklkelkkeLfnLrfqk 29 
                    +e+L+++ +  +++Lf+Lrfq+
     KKY14419.1 147 TEDLRQRFARVETMLFKLRFQQ 168
                    699******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.53
# Mc/sec: 2986.21
//
Query:       KKY14420.1  [L=321]
Description: putative nuclease domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-27   94.0   0.1      1e-26   93.5   0.1    1.2  1  SNase     Staphylococcal nuclease homologue


Domain annotation for each model (and alignments):
>> SNase  Staphylococcal nuclease homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.1   5.6e-31     1e-26       2     107 ..     161     274 ..     160     275 .. 0.92

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 5.6e-31
                 EEETTEE-STSSBTTTTTSTTHHHHHHHHHHHHHHCSSEEEEE-SSBSTTSEEEEEEEET......TEEHHHHHHHTTSSEE---BTT....STTTHHH CS
       SNase   2 vrLvgidaPetakpkktvqpfgkeAkeflkklvlqkkvvvleldkkkDkygrllayvyln......kknineeLvkeGlArvyevyek....neekkke 90 
                 +rL+g+daPe a++++++qp+g+eA +fl+k++ +k v+v       D+ygr++++vy+       ++++  +++k+G+A+vye+ +      + k++e
  KKY14420.1 161 IRLAGVDAPELAHFGQPAQPYGEEALAFLRKMLDGKRVRVWLWRP--DQYGRVVGTVYVRqwlgiwRTDVGRAMLKAGMATVYEAKSGaefgGKRKEAE 257
                 9*********************************99999999999..*************************************55543444467899* PP

                 HHHHHHHHHHTT-GGGC CS
       SNase  91 llkaeeeAkkkrkglWs 107
                 ++k+ee A+++rkglWs
  KKY14420.1 258 YRKIEERARENRKGLWS 274
                 ****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1958.03
//
Query:       KKY14421.1  [L=248]
Description: putative translation initiation factor eif [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-79  264.4   0.2    6.2e-79  264.0   0.2    1.1  1  eIF-6      eIF-6 family
  ------ inclusion threshold ------
      0.085   12.3   0.1       0.15   11.5   0.1    1.3  1  HupE_UreJ  HupE / UreJ protein


Domain annotation for each model (and alignments):
>> eIF-6  eIF-6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.0   0.2   6.9e-83   6.2e-79       1     196 [.       4     203 ..       4     204 .. 0.98

  Alignments for each domain:
  == domain 1  score: 264.0 bits;  conditional E-value: 6.9e-83
                 .E-BTTB--HHHH-EE-SSEEEE-TTS-HHHHHHHHHHHT..-EEEE--BTTBS-HHHH-EE-SSEEEEETT--HHHHHHHHHHHH---..EEE--SS- CS
       eIF-6   1 rlsiegsseiGvfarltnkyalvpegveeefvkaieeeLk..vevvettiagsrlvGslvvgNsngllvpstvtdeeleklkeslklev..erleeklt 95 
                 r+++e+s+e+Gvf++ltn+yalv+ g++e+f++++e+eL+  ++++++tiag+r+vG+l++gN++gllvp ++td+el+++++ l+++v  +r+ee+l+
  KKY14421.1   4 RAQFENSNEVGVFSTLTNSYALVAIGASENFYSIFEAELQdiIPICRATIAGTRIVGRLTAGNRKGLLVPTSTTDQELAHIRNTLPDTVkiQRIEERLS 102
                 789**************************************99*******************************************55555******** PP

                 -HHHHEEE-SSEEEE-GGGGG.GHHHHHHHHTSEEEE--BTTBS-TTTSEEE-SSEEEE-TT--HHHHHHHHHHHT-SEEE--BTTTBS-GGGTEEE-S CS
       eIF-6  96 AlGNvilaNDkvAlvhpdlsketveiiadvLgvevvrgtiagiktvGsaavvtnkgllvhpkateeeleeleellkveveagTvNrGsklvgsglvaNd 194
                 AlGNvi++ND+vAlvhpdl++et+eiiadvLgvev+r+tia++ + Gs++ ++n g+lvhp++  ++++el++ll+v++ ag+vNrGs++vg+g+v+Nd
  KKY14421.1 103 ALGNVICCNDHVALVHPDLERETEEIIADVLGVEVFRQTIASNVLTGSYMSLSNAGGLVHPRTPVQDQDELSSLLQVPLVAGSVNRGSPVVGAGMVVND 201
                 *************************************************************************************************** PP

                 S- CS
       eIF-6 195 kg 196
                 + 
  KKY14421.1 202 WL 203
                 96 PP

>> HupE_UreJ  HupE / UreJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   1.7e-05      0.15      23      93 ..     157     225 ..     141     226 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.7e-05
   HupE_UreJ  23 laGlaHP...llGlDHLlamvavGlwaaqlggrallllplafvaamlvGallglagvelpavEagialSvlvlG 93 
                 + Gl+HP   + + D L  ++ v l+a ++++ + ++      a m+v  +l+++g++  a+E  ++ Sv+ lG
  KKY14421.1 157 AGGLVHPrtpVQDQDELSSLLQVPLVAGSVNRGSPVV-----GAGMVVNDWLAVTGMDTTATELSVVESVFRLG 225
                 56999963337799**************996544433.....47899999*******************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 1549.80
//
Query:       KKY14422.1  [L=255]
Description: putative ubiquitin c-terminal hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-49  167.5   0.0      4e-49  167.2   0.0    1.0  1  Peptidase_C12  Ubiquitin carboxyl-terminal hydrolase, family 


Domain annotation for each model (and alignments):
>> Peptidase_C12  Ubiquitin carboxyl-terminal hydrolase, family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.2   0.0   2.3e-53     4e-49       1     208 [.      15     228 ..      15     232 .. 0.85

  Alignments for each domain:
  == domain 1  score: 167.2 bits;  conditional E-value: 2.3e-53
                    ---EE--HHHHHHHHHHHT--S...EEEE--S.SH.HHTTS...---EEEEEEE.----------.-----.----..T...TS------STTGHH CS
  Peptidase_C12   1 wlplEsdPevftelleklGvkg.vqfeevysldde.llasl...pvyglillfkyieeeeeeeerekeeee.kdeeeeevsekvfFakQtiqnaCg 90 
                    ++plE++Pev+t+l++ lG+++ ++f+++y+ld   l  ++   pv++l+++f+ ++   +e+   +ee++  ++e+++ se v++++Qti naCg
     KKY14422.1  15 FVPLENNPEVMTSLAHTLGLSKdYAFHDIYTLDVAsLTTEMvrrPVLALLFIFP-LTAV-NETFYLEEESKlPKYERSGPSEPVLWFHQTIGNACG 108
                    79******************************9886444445988*********.5544.4444434444457777789999************** PP

                    HHHHHHHHHH..STS--.-TTSHHHHHHHHHTTS-HHHHHHHHHT-HHHHHHHTTSC..---SSTHH....HHS--EEEEEEEEE.TTEEEEE-TT CS
  Peptidase_C12  91 tiAlLhvllNlekeaeeielgseLkkfkeftkelspeergealenseeireahnsfasegqteapee....eedvafHFiafvpv.ngklyeLDGl 181
                    +i+lLh+l+N +  +++i+++s +++++++++ l+pe+r+++le+s+ ++ ah+++a++g+t++p +    + d +  Fiafv+  +g+l+eL+G+
     KKY14422.1 109 LIGLLHCLTNGP-VTSKINPDSAVDRIIKDATPLDPENRSKLLEDSTILEVAHAQHAARGDTAPPPDprtwH-D-DQGFIAFVKGnDGHLWELEGR 201
                    **********98.57788*********************************************998877642.3.578******868********* PP

                    S.S-EEEEE--T..TTH.HHH.HHHHHH CS
  Peptidase_C12 182 kegPidlgeveeeeedl.edavrkviqe 208
                    ++gP+d+g++e  ++ + e++++k ++ 
     KKY14422.1 202 RKGPVDRGPIE-VDDMFsETVLEKSVRP 228
                    **********5.4566666676776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.54
# Mc/sec: 1422.85
//
Query:       KKY14423.1  [L=778]
Description: putative methylmalonate-semialdehyde dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.2e-131  438.6   0.2   3.2e-131  438.1   0.2    1.1  1  Aldedh          Aldehyde dehydrogenase family
    3.8e-28   98.1   1.6    7.9e-28   97.0   1.6    1.6  1  Nnf1            Nnf1
  ------ inclusion threshold ------
      0.054   13.5   2.2        0.1   12.6   2.2    1.5  1  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
      0.091   12.0   0.1       0.14   11.4   0.1    1.1  1  FmiP_Thoc5      Fms-interacting protein/Thoc5
       0.12   11.4   0.0        0.2   10.7   0.0    1.2  1  LuxC            Acyl-CoA reductase (LuxC)
       0.14   12.2   0.7       0.25   11.4   0.7    1.3  1  UPF0242         Uncharacterised protein family (UPF0242) N-te
       0.17   11.8   2.3       0.62    9.9   2.3    1.9  2  Apolipoprotein  Apolipoprotein A1/A4/E domain


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  438.1   0.2  1.2e-134  3.2e-131       2     448 ..      47     493 ..      46     502 .. 0.97

  Alignments for each domain:
  == domain 1  score: 438.1 bits;  conditional E-value: 1.2e-134
                 ET-SSSE.EEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH CS
      Aldedh   2 veseset.ievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlry 99 
                 v+s++++ i+ ++Pat++ ++++p++t e+++aava+A++af+aw+++++  R++i+ k+ +l++e+ ++la+ +tle+Gk++a+a+++v + ++v++ 
  KKY14423.1  47 VPSKATQwIDLHDPATNNLVTRIPQSTDEELKAAVASAEKAFPAWRETSIIARQQIMFKFTALIRENWDRLAASITLEQGKTFADAKGDVLRGLQVAET 145
                 66777666******************************************************************************************* PP

                 HHHHHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHH CS
      Aldedh 100 yaelaeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevge 198
                 +++  ++l+gevl++++++++ ++rePlGvv+aI+P+NfP+++++w + +a ++GN+++lKP+e+ p  a++lael+++ag+P+gv+n+v+g  +++ +
  KKY14423.1 146 ACGITTQLTGEVLEVAKDMETRSYREPLGVVAAICPFNFPAMIPLWCIPIATVTGNCMILKPSERDPGAAMILAELAQKAGFPPGVINIVHG-SAKTVD 243
                 ***************99***************************************************************************.77899* PP

                 HHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT-- CS
      Aldedh 199 alvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklk 297
                  ++++p ++++sf+Gs++ g+ i ++ +++ krv++ lG+kn++  l+d++ ++a++aiv +afg aGQ+C+a s ++   ++ ++++ +++e ak+l+
  KKY14423.1 244 FIIDEPTIKAISFVGSNRAGEYIFARGSAQGKRVQANLGAKNHAALLPDCNKNHALNAIVGAAFGAAGQRCMALSTIVTVGET-KDWLPEIAELAKNLN 341
                 **************************99999********************************************99888887.7799*********** PP

                 BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT.E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSE CS
      Aldedh 298 vgdpldedtdvGPliseaqlekvekyveeakeegaklllGge.reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdtey 395
                    +++e  d+GP++s+++ e++ek++++a+eega++ll+g+  + +++ +g+++ Pt++++v+p+mr+++eEiFGPVl+ +++ d++ ai++ N++ey
  KKY14423.1 342 TNGGFEEGADLGPVVSPQSKERIEKLIASAEEEGATILLDGRgYKPEKYPNGNWIGPTIISDVKPHMRCYTEEIFGPVLVCLSVPDLDSAIDLINNNEY 440
                 ******************************************9899***************************************************** PP

                 ESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BS CS
      Aldedh 396 GLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreg 448
                 G++a++ft++ ++a r+ +++eaG+v+iN ++ +   ++ f+G k+S  G  +
  KKY14423.1 441 GNGAAIFTRSGATATRFQKDIEAGQVGINVPIPVPLPMFSFTGNKKSVAGTGA 493
                 ***********************************************999544 PP

>> Nnf1  Nnf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   1.6   3.1e-31   7.9e-28       2     109 ..     622     728 ..     621     729 .. 0.93

  Alignments for each domain:
  == domain 1  score: 97.0 bits;  conditional E-value: 3.1e-31
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCHH-T..........TTSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Nnf1   2 aLesvhkqmvefleesiraefeeIleerdvvekLneLDdlieeAkerreegeeeasrpevpphtLpPeeliaahlapakkeeqeeLearlqeleaenae 100
                 aLe v+kq++++le ++ +efeeI++er+v e Lne+D  ie+A++rr+++   ++ p  p+htL+++el +ahl+p+++ +++eLe++l+++++en++
  KKY14423.1 622 ALEGVWKQLNDKLEANCLREFEEICRERNVIEGLNEWDTAIEDARRRRDRSI-IGDGPGRPMHTLTAAELQSAHLTPYLQTAEQELETKLKATQSENQK 719
                 79***********************************************943.33445589************************************** PP

                 HHHHHHHHH CS
        Nnf1 101 laeeveeqr 109
                 +++ + +qr
  KKY14423.1 720 IMQSIVSQR 728
                 *****9998 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.2   4.1e-05       0.1       6      77 ..     704     776 ..     698     778 .] 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.1e-05
  CENP-F_leu_zip   6 lhvlekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevet.lkeeieelaeelreleldLva 77 
                     ++++ kLK++++++ ++ + + +  +++e + +++e+vi + E s ++++  +   ++ l++e  e+e +L+a
      KKY14423.1 704 QELETKLKATQSENQKIMQSIVSQRSDIESLVHDLEAVIKDLEGSVEAMNVgMGRGVDGLRAEVWEMEEELKA 776
                     5677788888888888888888888888888888888888888887777644666666666666666666655 PP

>> FmiP_Thoc5  Fms-interacting protein/Thoc5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   5.4e-05      0.14     105     155 ..     704     754 ..     695     769 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.4e-05
  FmiP_Thoc5 105 kelaeqlkeleekkkkleqeieekkkfLssLppkLkslkkatkplqealgl 155
                 +el+++lk+++++++k+ q i ++++ ++sL   L+++ k ++   ea+++
  KKY14423.1 704 QELETKLKATQSENQKIMQSIVSQRSDIESLVHDLEAVIKDLEGSVEAMNV 754
                 5899************************************99988888865 PP

>> LuxC  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.8e-05       0.2      87     137 ..     170     220 ..     157     256 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.8e-05
        LuxC  87 aqprglvlhvlsgNvp.llpvmsilqglLvknvnllkvSssdpflaaallks 137
                 + p g+v  + + N p ++p++ i  + +++n+ +lk+S  dp++a+ l+ +
  KKY14423.1 170 REPLGVVAAICPFNFPaMIPLWCIPIATVTGNCMILKPSERDPGAAMILA-E 220
                 5799**********9945799**********************9887654.4 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.7   9.9e-05      0.25      61     164 ..     630     748 ..     621     754 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.9e-05
     UPF0242  61 lkeklekskleekeaklteld..eglktkeealeelqeeeeeLkee............ldakee.elerlkeenqqLqekleaiaedfeelkleleeqL 144
                 l+ kle++ l e e+   e +  egl++ + a+e+++ + ++                 + ++  +   l+  +q+L+ kl+a++ ++++  + + +q 
  KKY14423.1 630 LNDKLEANCLREFEEICRERNviEGLNEWDTAIEDARRRRDRSIIGdgpgrpmhtltaAELQSAhLTPYLQTAEQELETKLKATQSENQKIMQSIVSQR 728
                 555556666666666666666666666666666666665555544456666666644322222202223455666777777777777777777777777 PP

     UPF0242 145 aekqellqeyqetieeqrsv 164
                    + l++++++ i+++  +
  KKY14423.1 729 SDIESLVHDLEAVIKDLEGS 748
                 77777777777777776555 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.6   4.1e+03     145     165 ..     616     636 ..     593     640 .. 0.62
   2 ?    9.9   2.3   0.00024      0.62      50     127 ..     692     775 ..     684     777 .. 0.54

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.6
                     ..-----SSSHHHHHHHTS-T CS
  Apolipoprotein 145 aeeveerlssrveelreklee 165
                     a++ +++l+  +++l++kle+
      KKY14423.1 616 AQACPAALEGVWKQLNDKLEA 636
                     666677777777777777765 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00024
                     HHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHH......HHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHH CS
  Apolipoprotein  50 rarlepyrdevqeqlgqnleelrqrlapyteelre......rlaadaeelqeqlavyaeelrerlerhvealkarlapyveelr 127
                      a l+py++ ++++l+ +l++ +++ + + + +        +l +d+e++ + l+   e ++ ++ r+v+ l+a +++  eel+
      KKY14423.1 692 SAHLTPYLQTAEQELETKLKATQSENQKIMQSIVSqrsdieSLVHDLEAVIKDLEGSVEAMNVGMGRGVDGLRAEVWEMEEELK 775
                     456677777777777777777776666666666652222333333333333333333333444444447777666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (778 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       991  (0.0552736); expected 358.6 (0.02)
Passed bias filter:                      868  (0.0484132); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.77u 0.33s 00:00:01.10 Elapsed: 00:00:00.50
# Mc/sec: 4636.16
//
Query:       KKY14424.1  [L=850]
Description: putative vegetative cell wall protein gp1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.54   11.0  16.4        3.1    8.6   1.3    2.6  2  GRP       Glycine rich protein family
        1.8    8.3  14.2        5.6    6.8  14.2    1.7  1  CNDH2_C   Condensin II complex subunit CAP-H2 or CNDH2, C-ter


Domain annotation for each model (and alignments):
>> GRP  Glycine rich protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   7.9    0.0012        11      41      76 ..     216     251 ..     195     262 .. 0.62
   2 ?    8.6   1.3   0.00034       3.1      18      82 ..     786     848 ..     781     850 .] 0.60

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0012
         GRP  41 kdekyggggkhggGgygggggggngGGGykgggGgy 76 
                  +    ++g++g+Gg  ggg+gg gG G++++ G+ 
  KKY14424.1 216 ASSTPKRSGRGGRGGSRGGGRGGRGGRGGHDRSGNK 251
                 444444555556666666666666665555555554 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00034
         GRP  18 LissevaaaelskeeksekeeevkdekyggggkhggGgygggggggngGGGykgggGgygggggg 82 
                 Lis+   ++++  ++++  ++++ ++ +++  + +  g +g g g   G G++g+gGg   gg g
  KKY14424.1 786 LISTPTTTNQSRPSNRPRRNQTTRPDFEFRMFNPNPPGSSGSGSGS--GSGRRGRGGGSTTGGAG 848
                 6777777777777777888888888888887777444444444433..44444444444443333 PP

>> CNDH2_C  Condensin II complex subunit CAP-H2 or CNDH2, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  14.2   0.00062       5.6      26     185 ..     270     513 ..     251     515 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00062
     CNDH2_C  26 vPkgleeakkrkrkgsik.....lqeflsalseklqavkeekkaekkg.....pafadeleylyqkeakerskarrklar...........eeklkqal 103
                  P+ +e+ + +kr++++k     l  ++s++ e+l+a + +k  +k+      p   d+l+ l qk +++++  + + +             ++l ++ 
  KKY14424.1 270 YPDTEETLALKKRRQELKaffrhLAPVHSTALETLAARDLTKICRKQDahttaPGYDDTLNTLQQKFKERQAILKAEYEVkvraemrryqdAQNLSEQG 368
                 588899999999999944333333333333333333333333333333555668999999998888777777777665223444444333322233333 PP

     CNDH2_C 104 leeeeaeeeeevdeqeddddneaedgvddd..ddfgieleeeeddlkeseeeee............................................. 155
                  +    + ++e+   ++ d +  e+ +++   dd+ ++    ++dl++++++++                                             
  KKY14424.1 369 FRDHVRNAHAEHLSFAKRDLQRLEETMTAVddDDHTVAG---SEDLNHQHRHTDplqaqpagenrttrgynshavrqiiptalgsydpeefeeharrrv 464
                 333333333333333333443333333333333333333...334444444444555666677777888888888889999999999999999999999 PP

     CNDH2_C 156 ...................eeeeeeltYeeLvrqhleaflassqkyvqe 185
                                    +e+e+ +++e +vrq+l+++++ +++ v+e
  KKY14424.1 465 mftdiiepilaeqerkqaeAEQEKAAQLEKIVRQNLDTLVQAAESNVRE 513
                 9999999999999999999999999*****************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1511  (0.0842769); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.54
# Mc/sec: 4781.69
//
Query:       KKY14425.1  [L=568]
Description: putative calnexin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   8.6e-171  567.7  15.5   8.6e-171  567.7  15.5    2.0  2  Calreticulin  Calreticulin family
  ------ inclusion threshold ------
      0.025   15.1   4.5      0.068   13.7   4.5    1.7  1  YtxH          YtxH-like protein
          5    7.8   8.1        1.3    9.7   0.7    3.5  3  OAD_gamma     Oxaloacetate decarboxylase, gamma chain


Domain annotation for each model (and alignments):
>> Calreticulin  Calreticulin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  567.7  15.5  1.4e-174  8.6e-171       1     367 []      49     416 ..      49     416 .. 0.99
   2 ?    1.9   0.5     0.014        82     218     247 ..     419     448 ..     417     456 .. 0.90

  Alignments for each domain:
  == domain 1  score: 567.7 bits;  conditional E-value: 1.4e-174
  Calreticulin   1 fveqFeeeeelekrwikskakked....eeakYkgkwsveepkklkglegdkgLvlkskakhhaisaklekpiklkkkdLvvqYevklqeglecgga 93 
                   f+eqF++  ++e+rw++s+akked    e ++Y g+wsveep+++kg+egdkgLvlk+ a+hhais+k++k+i++k k+LvvqYevklq+glecgga
    KKY14425.1  49 FLEQFTD--DWETRWKPSHAKKEDsksdEDWAYVGEWSVEEPTVFKGIEGDKGLVLKNPAAHHAISSKFPKKIDNKGKTLVVQYEVKLQKGLECGGA 143
                   79****8..9**********9999999999******************************************************************* PP

  Calreticulin  94 yikLlseeeekdleefsdktpytimFGpdkcgstnkvhfilrkknpktgeieekhlkkppklkkdklthLytLilkpdntfeiridgkvvksgnlle 190
                   y+kLl+++++ ++eefs+ +py imFGpdkcgstnkvhfi+++knpktge+eekhl++pp++++dk+++Ly+L ++pdntf+++idg+ vk+g+lle
    KKY14425.1 144 YMKLLQDNKKLAAEEFSNASPYVIMFGPDKCGSTNKVHFIFKHKNPKTGEYEEKHLTSPPSARIDKKSTLYSLYVHPDNTFNMLIDGNYVKNGSLLE 240
                   ************************************************************************************************* PP

  Calreticulin 191 dfeppvnppkeidDpedkkPedWddrekipDpeavkPedwdekapekipdpeavkPedWledepelipdpeaekPedwdeeedgeweaplikNpkCe 287
                   df+p+vnppkeidD +d+kP+dW+d+++ipDpeavkPedwde+ap +++d +a+kP+dWledep+ ipdpeaekPedwd+eedg+w+ap+++NpkCe
    KKY14425.1 241 DFTPSVNPPKEIDDAKDTKPADWVDEARIPDPEAVKPEDWDEEAPFEVVDADATKPDDWLEDEPSSIPDPEAEKPEDWDDEEDGDWVAPTVPNPKCE 337
                   ************************************************************************************************* PP

  Calreticulin 288 easgCgkwkpplikNpkYkGkwkaplienpnYkGeWkprkipnpdyfedkkplkklepigaigfelwsmskdilfdniyi 367
                   easgCgkw+pp+i+Np+YkGkw+ap i+np+YkG+W+prki+np+yfedk+p +++ep+gaigfe+w+m++dilfdniyi
    KKY14425.1 338 EASGCGKWEPPMIRNPAYKGKWTAPYIDNPAYKGVWAPRKIANPAYFEDKTP-SNFEPMGAIGFEIWTMQSDILFDNIYI 416
                   ****************************************************.99************************8 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.014
  Calreticulin 218 kipDpeavkPedwdekapekipdpeavkPe 247
                    ++D ea k e +d k+p ++ ++ea kP 
    KKY14425.1 419 SVEDAEALKKETFDVKHPLEVAEEEASKPP 448
                   689***********************9996 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   4.5   1.1e-05     0.068       6      57 ..     507     557 ..     502     567 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
        YtxH   6 iGaavGaaaglLlAPksGketRkdlkekaddlkekakelleeakekakekae 57 
                 + +++Ga+ag   AP++  ++ k+ ke+a+ +k+ka +++++ +e++k +a+
  KKY14425.1 507 LAIIIGALAGS-SAPQKAQDVAKKTKEAAESAKDKAVDAATTGAETVKAEAT 557
                 55677777776.79*************************9999999966554 PP

>> OAD_gamma  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2      0.45   2.7e+03      36      47 ..      26      37 ..      10      74 .. 0.56
   2 ?   -0.2   0.1      0.27   1.6e+03      38      62 ..     442     465 ..     431     470 .. 0.43
   3 ?    9.7   0.7   0.00021       1.3      13      58 ..     502     549 ..     498     562 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.45
   OAD_gamma 36 akkkkkkakaaa 47
                a++++ +++ a+
  KKY14425.1 26 AEEAATTEAVAK 37
                222222222221 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.27
   OAD_gamma  38 kkkkkakaaaaaaaaaaaaa......elddd 62 
                 ++++k+++++    ++   +      + +dd
  KKY14425.1 442 EEASKPPKPE----TK---PsspldlKFTDD 465
                 1111111111....11...012244555555 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00021
   OAD_gamma  13 vVFvvLilLslvislfskiikkkakkkkkkakaaaaaaaaaaaaa..e 58 
                 +V +vL++++ ++   s+  k+++ +kk k++a++a+ +a  aa+  +
  KKY14425.1 502 IVVTVLAIIIGALAGSSAPQKAQDVAKKTKEAAESAKDKAVDAATtgA 549
                 788899999999998777777764444444444444443333332332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 3623.31
//
Query:       KKY14426.1  [L=241]
Description: putative class ii aldolase adducin domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-43  148.0   0.0    3.4e-43  147.7   0.0    1.1  1  Aldolase_II  Class II Aldolase and Adducin N-terminal domain


Domain annotation for each model (and alignments):
>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.7   0.0   1.9e-47   3.4e-43       3     185 ..      28     230 ..      26     231 .. 0.87

  Alignments for each domain:
  == domain 1  score: 147.7 bits;  conditional E-value: 1.9e-47
                  HHHHHHHHHHTTSSCTTBCEEEEEETSTTEEEEEBTSS-GGGHTGGGEEEEETTSCEEEEC......ECSSSTB-TTHHHHHHHHHH-TT-SEEEEE- CS
  Aldolase_II   3 laeasrllarrglvegtgGniSvrvpeedsflitpsgvdfeeltaedlvvvdldsgevveg......kekggkpssetplHlaiykarpdaravvHtH 94 
                  + e+++++++ g+v+gtgG +S+r+  +++++i+psgv++e ++ e+++v++  + + +        k  ++kps +tpl+la++ +   a +++HtH
   KKY14426.1  28 IPELCKRFYQWGWVTGTGGGTSIRR--DNHVFIAPSGVQKELMKSENIFVLEYPTPKYPPSarkylrKPLALKPSDCTPLFLAAFDH--GATCCIHTH 121
                  7899********************5..59**********************985343332246677756789*************98..********* PP

                  -HHHHHHHTCC................STSCHCCSSHHHHC.HSS..SEEEEES-SSTTCHHHHHHHHHHHH.H.S-SEEEETTTEEEEEESSHHHHH CS
  Aldolase_II  95 spaavalsala................gkeglppltqeaaklllg..devpvipyaapgteelgealaealk.e.dakavllrnHGlltvGetleeAv 172
                  s++av++++l+                +++g+p+ +++++  + +   ++p+i++++++++++ e l++a++ + d+ avl+r+HG++++G+t+++A+
   KKY14426.1 122 SQWAVLVTLLVeklhgkdamfeisnieQIKGIPKGREKGMLGF-HdtLRIPIIENTPFEEDLT-EYLEKAMAkYpDTYAVLVRRHGIYAWGDTVAKAK 217
                  ********766*************9998888887555555433.34799********997777.*******9647999******************** PP

                  HHHHHHHHHHHHH CS
  Aldolase_II 173 alaetleeaaeiq 185
                  +++e l+++++++
   KKY14426.1 218 TQCESLDYLFQLA 230
                  **********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1616.96
//
Query:       KKY14427.1  [L=577]
Description: putative sorting nexin 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-85  287.1   6.3    1.6e-85  286.5   6.3    1.2  1  Vps5      Vps5 C terminal like
    1.9e-23   82.6   0.2    5.1e-23   81.2   0.0    1.8  2  PX        PX domain
  ------ inclusion threshold ------
      0.055   13.2   7.0       0.64    9.7   2.2    2.3  2  BAR_3     BAR domain of APPL family
       0.98    9.5   5.4       0.88    9.6   0.1    3.3  4  PilJ      Type IV pili methyl-accepting chemotaxis transducer
        2.9    7.1   9.5       0.33   10.2   4.3    1.9  2  DUF3450   Protein of unknown function (DUF3450)


Domain annotation for each model (and alignments):
>> Vps5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.5   6.3   4.4e-89   1.6e-85       8     234 ..     298     526 ..     293     528 .. 0.97

  Alignments for each domain:
  == domain 1  score: 286.5 bits;  conditional E-value: 4.4e-89
        Vps5   8 ltssisks..stkfeEqDewFedkkqeldslesqLkkLykaiellvsqrkelasataelakslesLaslelskslsralsqlaeveerikellerqaeq 104
                 ++ss+  +  s kf E+D+wF+d+k +ld+le+qL+ L+++i+++++qrk l++a++e+++sl+sL+  els+ ls  l++l+e++ ri+el+erqa+q
  KKY14427.1 298 MFSSLGIGgsSGKFVEHDDWFHDRKIYLDALENQLRALMRSIDTVITQRKVLSEAAGEFSTSLHSLSRTELSPLLSGPLDSLSELQLRIRELYERQAQQ 396
                 455555445599*************************************************************************************** PP

        Vps5 105 dvltLgetideylrligsvksvfeqRvklwqkwqsaeqelskkkeqleKlekaaksqqdklqqlkkeveelerkvqeaekeFeeisetikkElerFete 203
                 dvltLg+t+dey+rligsvk++f+qR+k++++w+ ae el k+k++++Kl +++k+qqdkl+ql+++v ++er+v++a+  Fe++++ +++Ele+Fe+e
  KKY14427.1 397 DVLTLGITVDEYIRLIGSVKQAFNQRQKAFHSWHAAETELVKRKSNQDKLLRQGKTQQDKLNQLNADVSDAERRVHQARLLFEDMGRLMRNELEKFERE 495
                 *************************************************************************************************** PP

        Vps5 204 rvedfknvvekyLesaiesqkevielWetfl 234
                 +vedfk+ +e++Lesa+e+qke+ielWetfl
  KKY14427.1 496 KVEDFKSGIETFLESAVEAQKELIELWETFL 526
                 ******************************8 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   1.4e-26   5.1e-23       3     112 ..     168     275 ..     166     276 .. 0.95
   2 ?   -2.5   0.1       1.4   4.9e+03      73      95 ..     490     512 ..     456     517 .. 0.75

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 1.4e-26
                 EEEEEEEEEEEETTSSEEEEEEEEEETTS.SSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSCHH CS
          PX   3 laqvsvleretsgskkhsyylyevelktg.akewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpel 100
                 ++++sv ++++ g+  +s ++y+ + k   + e+ v+RrY+dF +L++ L ++ p+v++Pp P+k+++g+   +d++f+e+rr++Le++L++ + hp l
  KKY14427.1 168 SFDISVGDPHKVGDLTSSHIVYQTTSKAYrQPEFAVSRRYKDFLWLYTSLHNNNPGVVVPPPPEKQVVGR---FDSNFVESRRAALERMLNKTAAHPIL 263
                 6789999***999999999999999998899**************************************9...************************** PP

                 HHSHHHHHHHHS CS
          PX 101 rnsevlteFLev 112
                 + + +l+ FLe+
  KKY14427.1 264 QHDADLKIFLES 275
                 **********97 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.4
                 CTTSHHHHHHHHHHHHHHHHHHH CS
          PX  73 rkkdeefiekrrkgLeeyLqrll 95 
                 +k+++e +e  ++g+e +L++ +
  KKY14427.1 490 EKFEREKVEDFKSGIETFLESAV 512
                 67888888888888888888765 PP

>> BAR_3  BAR domain of APPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.2   0.00018      0.64      24     147 ..     325     443 ..     319     476 .. 0.63
   2 ?    2.9   5.0     0.021        74      67     127 ..     442     511 ..     392     523 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00018
       BAR_3  24 leelekklkkllKlckrlieagkaysaaqkqfaqsLrelkkeskgdeetdesLkkfsellqelenehtilldqaqrsikkpLekFrkedlkevkekkkk 122
                 l+ le++l  l++++  +i+  k +s+a  +f++sL++l+    +  +++  L  +sel   + + ++   +qaq+  +  L   + e ++ +   k++
  KKY14427.1 325 LDALENQLRALMRSIDTVITQRKVLSEAAGEFSTSLHSLSRTELSP-LLSGPLDSLSELQLRIRELYE---RQAQQD-VLTLGITVDEYIRLIGSVKQA 418
                 789***********************************99876543.444444444444333333222...344444.444566666666666666666 PP

       BAR_3 123 Fdkesekleaaleknaqlskkkkes 147
                 F++ ++ + +  +   +l k+k ++
  KKY14427.1 419 FNQRQKAFHSWHAAETELVKRKSNQ 443
                 6666666666555555555553332 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.021
       BAR_3  67 kgdeetd......esLkkfsellqelen...ehtilldqaqrsikkpLekFrkedlkevkekkkkFdkes 127
                 ++d+++       + L++++  ++  e+   + + l++ + r ++++LekF +e+++ +k   + F  + 
  KKY14427.1 442 NQDKLLRqgktqqDKLNQLNADVSDAERrvhQARLLFEDMGRLMRNELEKFEREKVEDFKSGIETFLESA 511
                 444444455555566666666666555411155689************************9999997665 PP

>> PilJ  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.2   1.2e+04      49      74 ..     233     258 ..     232     265 .. 0.69
   2 ?    9.6   0.1   0.00025      0.88      43      81 ..     345     390 ..     330     408 .. 0.77
   3 ?   -0.0   0.5      0.24   8.6e+02      70      96 ..     445     472 ..     407     500 .. 0.61
   4 ?   -0.2   0.5      0.27   9.8e+02      43      63 ..     456     476 ..     430     546 .. 0.58

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.2
        PilJ  49 etiaqfdrtlaalrlgdpapgllvpa 74 
                 + +++fd ++ + r+ ++++ l ++a
  KKY14427.1 233 QVVGRFDSNFVESRRAALERMLNKTA 258
                 56778888888888888887777664 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00025
        PilJ  43 araqlretiaqfdrtlaalrlgdpapgllvpae.......avraql 81 
                 +r+ l+e++++f ++l++l++++++p l  p +        +r+ +
  KKY14427.1 345 QRKVLSEAAGEFSTSLHSLSRTELSPLLSGPLDslselqlRIRELY 390
                 678899*******************999999874443333333333 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.24
        PilJ  70 llvpae.avraqleaveqlWqelkkpae 96 
                  l  ++ + +++l++++++ + +++ ++
  KKY14427.1 445 KLLRQGkTQQDKLNQLNADVSDAERRVH 472
                 2222224556666666666666666553 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.27
        PilJ  43 araqlretiaqfdrtlaalrl 63 
                 + +ql++ +++ +r++++ rl
  KKY14427.1 456 KLNQLNADVSDAERRVHQARL 476
                 344444444444444444333 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2      0.35   1.3e+03      62     110 ..     327     361 ..     320     400 .. 0.48
   2 ?   10.2   4.3   9.1e-05      0.33      13     116 ..     414     522 ..     408     529 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.35
     DUF3450  62 slevyneqlerlvasqeqeiasleeqieeieeierelvpllekmidrLe 110
                 +le + + l r+++++ ++++ l e   e++               +L+
  KKY14427.1 327 ALENQLRALMRSIDTVITQRKVLSEAAGEFST--------------SLH 361
                 34444444444444444444444444433332..............222 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 9.1e-05
     DUF3450  13 alaatldqalkeaekavaaaaqsqkk...idklddekqellaeyralkeeleslevyneqlerlvasqeqeia.slee.qieeieeierelvpllekmi 106
                 +++++++q +k+  +++aa+ +  k+   +dkl ++ ++ ++++++l++ ++++e    q + l +++ + +  +le+ + e++e  +++++ +le+ +
  KKY14427.1 414 SVKQAFNQRQKAFHSWHAAETELVKRksnQDKLLRQGKTQQDKLNQLNADVSDAERRVHQARLLFEDMGRLMRnELEKfEREKVEDFKSGIETFLESAV 512
                 5678888888889999998887765511167888999999999**********99999999999998866554144433457899************** PP

     DUF3450 107 drLeqfveld 116
                 ++ ++++el 
  KKY14427.1 513 EAQKELIELW 522
                 **99999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       984  (0.0548832); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 3548.44
//
Query:       KKY14428.1  [L=184]
Description: putative mitochondrial 54s ribosomal protein 36 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.054   13.1   0.1       0.12   12.1   0.1    1.5  1  Apo-CIII  Apolipoprotein CIII (Apo-CIII)


Domain annotation for each model (and alignments):
>> Apo-CIII  Apolipoprotein CIII (Apo-CIII)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   6.5e-06      0.12       2      25 ..     152     176 ..     151     183 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.5e-06
    Apo-CIII   2 aedasLLgvmqgYvq.qAsktaqda 25 
                 +ed+sLL+++ gY q +A+k a+d 
  KKY14428.1 152 EEDESLLDLISGYGQeEAAKAAKDN 176
                 79***********863699***995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 1314.58
//
Query:       KKY14429.1  [L=485]
Description: hypothetical protein UCRPC4_g06749 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0023   17.4   0.3     0.0051   16.3   0.0    1.7  2  ANAPC4    Anaphase-promoting complex, cyclosome, subunit 4


Domain annotation for each model (and alignments):
>> ANAPC4  Anaphase-promoting complex, cyclosome, subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.8e-07    0.0051      17     112 ..     128     240 ..     118     245 .. 0.82
   2 ?   -3.5   0.2      0.34   6.1e+03     183     195 ..     353     365 ..     345     367 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.8e-07
      ANAPC4  17 lvelarkssqlqs.lleyinetlkeiseewke.alelldrklrnledelkeeg............eeeksisaeLldllltGli....spalkdfLvnq 97 
                 l ++ +++  +q+ + ++i+++ +e+s++ ++ al++ + klr+l+  lk+ +              ++ ++++L +   tG++    +++++++L n+
  KKY14429.1 128 LKDITSTFFVIQEgIARVIKDVTSELSQDLQNpALQPVNDKLRRLKHSLKSSEifyeemiqpfliL-DTAPQQDLPQSSPTGTAvaisNKSTRKYLPNN 225
                 555666666665437799************999*******************************62.56777888777777754334499********* PP

      ANAPC4  98 lgerglkkwekaves 112
                 +g+r  k+++k+ + 
  KKY14429.1 226 FGKRKGKRVKKVQVG 240
                 ***********8665 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.34
      ANAPC4 183 elkqfkaFinWlk 195
                 e+ + +aF++W++
  KKY14429.1 353 ERARVQAFYQWWQ 365
                 6778999****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 2892.73
//
Query:       KKY14430.1  [L=305]
Description: putative pectate lyase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-73  247.2   7.0    5.7e-70  235.0   3.0    2.2  2  Pectate_lyase  Pectate lyase
  ------ inclusion threshold ------
        8.3    4.8   7.3         10    4.6   7.3    1.1  1  Macoilin       Macoilin family


Domain annotation for each model (and alignments):
>> Pectate_lyase  Pectate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.0   3.0   6.3e-74   5.7e-70       2     148 ..     104     251 ..     103     253 .. 0.98
   2 !   14.4   0.1   2.2e-06      0.02     173     200 ..     253     278 ..     251     282 .. 0.90

  Alignments for each domain:
  == domain 1  score: 235.0 bits;  conditional E-value: 6.3e-74
  Pectate_lyase   2 talptasgskslkatitvkagetfDggmkrfdrgssckgqsegeekdavfiledGAtlknviiganqaeGvhckgsctienVwwedVcEDAitikg 97 
                    talp++sgs++l+a++t++aget+Dggm  +drg+sc+gq+eg+++davf+ledGAtl+nviig+nq+eGvhc+gsct++nVww++VcEDA+tik+
     KKY14430.1 104 TALPASSGSSTLSAVQTIAAGETYDGGMYMIDRGVSCTGQDEGGDSDAVFELEDGATLSNVIIGPNQIEGVHCYGSCTLDNVWWSAVCEDAFTIKE 199
                    689********************************************************************************************9 PP

  Pectate_lyase  98 qgsg.tstivgGgAkkasDKvvQhNgagtvkiknFtaedfGklyRscGnckt 148
                    q++  t+ti+gGgA++a+DKv+QhNg+gt+++++Ft++dfGklyRscGnc++
     KKY14430.1 200 QDADgTTTITGGGAFGADDKVFQHNGGGTLSVSGFTVDDFGKLYRSCGNCDS 251
                    98767*********************************************85 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.2e-06
  Pectate_lyase 173 nygdtatikklnikaskvkkiceeykgv 200
                    nygdtat++  ni+ s+v++ic ey+g 
     KKY14430.1 253 NYGDTATFT--NIEISDVETICAEYEGN 278
                    9********..9***************4 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   7.3    0.0011        10     295     352 ..      47      96 ..      18     158 .. 0.42

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0011
    Macoilin 295 skrlsksessgsesellveesvkskssssssssnknskkasagsagssnssskkhses 352
                 s+  +++++        + es++s  +sss +++++ ++++a+sa+ s +++++  ++
  KKY14430.1  47 SAAAETTSA--------AAESSSSAYESSSYAESSSVSSETASSATGSATTTASVTAK 96 
                 111111111........11111111111111111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1329  (0.0741257); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.48
# Mc/sec: 1917.32
//
Query:       KKY14431.1  [L=789]
Description: hypothetical protein UCRPC4_g06751 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-141  472.9  66.6      2e-92  310.8  44.5    3.8  4  DUF2457   Protein of unknown function (DUF2457)


Domain annotation for each model (and alignments):
>> DUF2457  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -10.4  14.4         1   1.8e+04     291     375 ..     124     205 ..     111     247 .. 0.62
   2 ?   -6.3   6.1         1   1.8e+04     293     347 ..     227     277 ..     202     290 .. 0.47
   3 !  310.8  44.5   1.1e-96     2e-92       1     337 [.     293     607 ..     293     610 .. 0.83
   4 !  176.9  14.1   4.6e-56   8.2e-52     294     467 ..     588     788 ..     585     789 .] 0.84

  Alignments for each domain:
  == domain 1  score: -10.4 bits;  conditional E-value: 1
     DUF2457 291 kaspkrlrSppPrrrgksPpkkrlrsPpprklfdrksprrlrspaptarkspa.aspaeeaekvkfkelaerpgltrtkSlPrtpa 375
                 ++sp r+ Sp+P      P  ++l sP     f+++ p+r+  ++ ++  +++ +++  +++ ++f+  a+       k +P    
  KKY14431.1 124 SESPVRTASPSP---PLPPQYTKLPSPQT-LKFNDDLPKRAPLTPVSEGPEAKvEANLGRKRCITFACRATSKPQESPKAVPTEKP 205
                 579999999999...23344566777755.44666668777655544444444366666888999998887777777888886543 PP

  == domain 2  score: -6.3 bits;  conditional E-value: 1
     DUF2457 293 spkrlrSppPrrrgksPpkkrlrsPpprklfdrksprrlrspaptarkspaaspa 347
                 s    + p Pr+r  s  +  + s +p k f +k   r +s  +  ++++  +p+
  KKY14431.1 227 STENATRPDPRTR-PSN-QIVVSSHSP-KKFSQKPVVREHSKGKD-IDTTPRKPR 277
                 4444444555444.222.222222222.33444444444444322.222222233 PP

  == domain 3  score: 310.8 bits;  conditional E-value: 1.1e-96
     DUF2457   1 RFheFasdeeeeddWirkdtevvkeklTinDtlkkEnairkLgeeaeeEaeeeeeeeeddeedeeddddddddedddedddeedededddstvedlsee 99 
                 RFheFas+++e+d W++++ e  k+++T++D ++k++ai ++g+e+eeE e++eee+++ e+d +++d++dd           d+d+            
  KKY14431.1 293 RFHEFASSNDEDDAWVHETVED-KSRITMDDLMQKDIAISRIGREVEEEDEQDEEEADELENDLDEADQEDDFAP-------SDDDD-----------V 372
                 9*******************99.*****************************98665555544444333322222.......22223...........3 PP

     DUF2457 100 asdGyetDnEaGFAdSdeeddedddlelWtpkastaatsaekleqlatklerrlSveesSisslesakkseksrkkka..relkskkskirpetpeLPD 196
                 ++ G+e+DnE+GFAdSd+++d+++d  +W+p+++taats+e+l+q +  ++rr S  + S++s++s + ++k + +++  ++++ k +++rp+tp+LPD
  KKY14431.1 373 SDGGNESDNEEGFADSDDDSDAESDDIFWAPSTTTAATSVEHLDQIRPLTARRVS--NCSTESMDSDDAANKLHVPSRgfKRRAIKGMRMRPGTPDLPD 469
                 578****************************************************..77888887755554444333311333344556********** PP

     DUF2457 197 STDFVCGTlDEDrplEeaYlsclearrrekhkviPQDiDPsFPtsdpededdddevakkkaeesddevwlhgeledld.eelrdrr.kersrkksekas 293
                 STDFVCGTlDEDrplE+aY+sc+e+++r+kh +iPQDiDPsFPt+dped+ d+++ +++  +++d+ +w++g+++++d e+ r+r+ k++  k+s++ s
  KKY14431.1 470 STDFVCGTLDEDRPLEAAYISCMEQKKRAKHVPIPQDIDPSFPTTDPEDNLDEEDECDE--DDTDEPQWMKGQFDEIDnETYRGRHrKSSIAKRSPNLS 566
                 ***************************************************99777775..69999***********95567999978888999***** PP

     DUF2457 294 pkrlrSppP..rrrgksP.p.kkrlrsPpprklfdrksprrlrspapt 337
                 p+r++Sp+P   +r +sP p +kr++sP+p+        +r++spap+
  KKY14431.1 567 PRRVHSPAPihTKRVHSPaPkQKRAHSPAPK-------QKRVHSPAPK 607
                 *********87444699985479*******4.......4677777764 PP

  == domain 4  score: 176.9 bits;  conditional E-value: 4.6e-56
     DUF2457 294 pkrlrSppPrrr.gksP.pk.krlrsPpprklfdrksprrlrspap.........tarkspaaspae..eaekvkfkelaerpgltrtkSlPrtpalff 378
                  kr +Sp+P+++  +sP pk k  rsPppr+lf+++ prrlrspap         t+r+s  a++++   + +++++ l +rp++trt+SlP+tp+++f
  KKY14431.1 588 QKRAHSPAPKQKrVHSPaPKlKAHRSPPPRRLFGQS-PRRLRSPAPgiiiesppgTRRTSIDATQVRtpVPLGITITRLGQRPNTTRTASLPHTPNPYF 685
                 59*******665489*997537789********986.99***************9888888866666334459************************** PP

     DUF2457 379 aqkeakkeka.........eeeeskkkdthvRgaiDIvkGLEkkrqrRkekfyrkycrrarkeqlkerrpqpGkGaeRmrelGLlvagk.....v.dag 462
                 ++++ +++++            +++ +d+h+Rga+DIv GLEkkrq+Rkekf+r++cr+a+keq+ er+++pGkGaeRmrelGL+ a++     +  + 
  KKY14431.1 686 RNYQRRQREEaiptsvtasPVGDDDFQDRHIRGAVDIVIGLEKKRQKRKEKFWRQHCRKAAKEQA-ERKTVPGKGAERMRELGLECAERnrgygMgPQP 783
                 *99844444445555544344566699*************************************8.***********************7776634455 PP

     DUF2457 463 nyvLS 467
                 ++vLS
  KKY14431.1 784 QLVLS 788
                 78888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1062  (0.0592336); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.48
# Mc/sec: 4942.80
//
Query:       KKY14432.1  [L=139]
Description: putative small monomeric gtpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.3e-44  148.9   0.0      1e-43  148.8   0.0    1.0  1  Arf              ADP-ribosylation factor family
    8.4e-09   35.0   0.0    1.3e-08   34.4   0.0    1.2  1  G-alpha          G-protein alpha subunit
     0.0021   18.3   0.0     0.0026   17.9   0.0    1.1  1  Roc              Ras of Complex, Roc, domain of DAPkinase
     0.0075   15.9   0.0      0.009   15.6   0.0    1.1  1  Ras              Ras family
  ------ inclusion threshold ------
       0.02   15.0   0.0      0.026   14.6   0.0    1.1  1  MMR_HSR1         50S ribosome-binding GTPase
      0.022   14.2   0.0      0.027   13.9   0.0    1.1  1  SRPRB            Signal recognition particle receptor beta su
       0.18   11.6   0.0       0.34   10.8   0.0    1.4  1  PhdYeFM_antitox  Antitoxin Phd_YefM, type II toxin-antitoxin 


Domain annotation for each model (and alignments):
>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.8   0.0     4e-47     1e-43      33     163 ..       1     139 []       1     139 [] 0.98

  Alignments for each domain:
  == domain 1  score: 148.8 bits;  conditional E-value: 4e-47
                 HHHHSSCEECSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS CS
         Arf  33 klkleelvttvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpeal 131
                 +lk+++++  +PT+++++eel+i n +ft++D+GG++++R+lWk+Yf+++ +++f+vD+ d eR++e+k+eL+all++e+l++ ++l+l+NK+D p+a+
  KKY14432.1   1 MLKNDRVAILQPTLHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDYERFTESKAELDALLAMEDLAKTPFLILGNKIDHPDAV 99 
                 699************************************************************************************************ PP

                 -HHHHHHHTTGGG........SSSSSSEEEEEEBTTTTBT CS
         Arf 132 seeelrellglee........lkgkrkleiqkcsavkgeg 163
                 se+elr++lgl++        l+g r++e+++cs+v+++g
  KKY14432.1 100 SEDELRHQLGLYQttgkgkvpLEGIRPIEVFMCSVVMRQG 139
                 *************8888888888**************997 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0     5e-12   1.3e-08     180     280 ..       5      94 ..       2      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 5e-12
                 HHHCS-----SEEEEEEECT-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GGGTTSEEEEEEE- CS
     G-alpha 180 DilkarlktvGisetkfevdsklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkllkntpiiLflnK 278
                 D +   ++t+  +  ++ ++ +++f+ +d+gG+++ r+ W+ +f +v+ i+Flv  +++           r++es +  ++++  + l++tp++++ nK
  KKY14432.1   5 DRVAILQPTLHPTSEELAIG-NNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDY----------ERFTESKAELDALLAMEDLAKTPFLILGNK 92 
                 55666678999999999999.9*********************************9999..........589999999999999999999999999999 PP

                 HH CS
     G-alpha 279 lD 280
                 +D
  KKY14432.1  93 ID 94 
                 99 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     1e-06    0.0026      54     119 ..      24      94 ..       7      95 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1e-06
                 TCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHH...CHHHHHHHHHHHCS..SS-EEEEEE-TT CS
         Roc  54 kkvklniWDtaGqerfrslhplylreaalailvydsrsse...nlkeWlkelkkvag..kspvilvgnkiD 119
                  + ++  +D++G+++ r l + y+ e + +++++d++++e   + k  l+ l ++ +  k+p++++gnkiD
  KKY14432.1  24 GNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDYErftESKAELDALLAMEDlaKTPFLILGNKID 94 
                 4567999***************************9776551114555666666554433789********9 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.5e-06     0.009      50     123 ..      28     100 ..      13     118 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.5e-06
                 EEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST.TTSEEEEEEETTTGGGG-SS- CS
         Ras  50 leiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvae.envpivLvGnKvDleekravs 123
                 ++ +D  G ++ ++l + y+ +++gi+ + d ++ e f++ k  ++ +  + +  ++p++++GnK+D  +  avs
  KKY14432.1  28 FTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDYERFTESKAELDALLAMEDlAKTPFLILGNKIDHPD--AVS 100
                 6678999***********************************99999999999988***********876..444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0     1e-05     0.026      31     114 .]      11      92 ..       5      92 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1e-05
                 TSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHHHHHHHHH...TTSEEEEEEES CS
    MMR_HSR1  31 gtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdas.eeklkpldeeleellee...akkplilvlnk 114
                 + T++++ +++++++++++  D+ G  +   + ++l k++    e++ i+++vda+  e +++ + el +ll     ak p++++ nk
  KKY14432.1  11 QPTLHPTSEELAIGNNRFTTFDLGG-HQ---QARRLWKDYFP--EVSGIVFLVDAKdYERFTESKAELDALLAMedlAKTPFLILGNK 92 
                 569**********9***********.33...44467777775..789*******8863345555555555543344567777776665 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.1e-05     0.027      48     137 ..      25     108 ..      10     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
                 GTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHHHHHHHHHHHTT---EEEEEE-TTSTT---HHHHHHHH CS
       SRPRB  48 gskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyeilliteklkdavdiliACnKqelflakspklikdaL 137
                 ++++t  D+ Gh++ r   +++     ++ g+vf+vD+   ++  ++ AEl   ++++      + ++li  nK +   a s+  ++++L
  KKY14432.1  25 NNRFTTFDLGGHQQARRLWKDY---FPEVSGIVFLVDAKDYERFTESKAELDALLAMEDL---AKTPFLILGNKIDHPDAVSEDELRHQL 108
                 6789999******998755555...7899*********************8544444433...678899999**9999998888888887 PP

>> PhdYeFM_antitox  Antitoxin Phd_YefM, type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00013      0.34      38      65 ..      55      81 ..      52      85 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
                     EEEEHHHHHHHHH.HHHHHCSHHHHHHH CS
  PhdYeFM_antitox 38 Vlvsleeyerlqeltekllslplnaerl 65
                      lv++++yer +e+++ l  l+++++ l
       KKY14432.1 55 FLVDAKDYERFTESKAELDALLAMED-L 81
                     59***********6666666666554.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1024.96
//
Query:       KKY14441.1  [L=202]
Description: putative methyltransferase type 11 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-05   22.6   0.0     0.0001   22.2   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    0.00064   20.4   0.0     0.0012   19.5   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
     0.0013   19.3   0.0     0.0025   18.4   0.0    1.5  1  Methyltransf_11  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.7e-08    0.0001      47     162 ..       2     127 ..       1     130 [. 0.74

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.7e-08
  Methyltransf_23  47 vtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevle.hvpdppellrqiatllkpgGylllseplasl.......kedrllld 132
                      v+g Dlsp++   +  +++ +++ +d++e++   + fdl+++r +   +++d+p+  r ++  lkp G+++ +e+  +        ++d+ + +
       KKY14441.1   2 VIGTDLSPIQPRYI--PPNLRFEIADADEEWTFGRNFDLVHSRVMNDtSLKDWPHFYREAFGVLKPLGWVESQEFSYKRyaddgslPADSCITQ 93 
                      6799*****99998..9999**********************988763788***********************75444445555555555555 PP

  Methyltransf_23 133 wlylvpag....rhisffsarslkelleeaGlev 162
                      w+ l ++g    ++    + + + +++++aG+ +
       KKY14441.1  94 WEDLWTEGisklGLKGHCDPDLVIQQMKDAGFVN 127
                      6555545444332223335566666666666665 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.9e-07    0.0012      45      97 .]      16      67 ..       1      67 [. 0.79

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.9e-07
                     TTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25 45 glnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97
                      +n++f+ +da e++ f    fDlv+s  +++ +s +d++++++e++ vLkp G
       KKY14441.1 16 PPNLRFEIADAdEEWTFGR-NFDLVHS-RVMNDTSLKDWPHFYREAFGVLKPLG 67
                     24789******66688875.9******.5788899*****************77 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.2e-07    0.0025      44      94 ..      18      69 ..       1      70 [. 0.79

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.2e-07
                     EEEETTEECCC.TSS-TT-EEEEEEES-CCC-.CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11 44 kvefvvadaek.lpfednsfDlvvssevlhhv.edpekalkeiaRvLkpgGll 94
                     +++f  ada +   f    fDlv s+ + ++  +d+ ++ +e+  vLkp G++
       KKY14441.1 18 NLRFEIADADEeWTFGR-NFDLVHSRVMNDTSlKDWPHFYREAFGVLKPLGWV 69
                     57788888886358888.9**********9999****************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1337.64
//
Query:       KKY14442.1  [L=464]
Description: putative cytochrome p450 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-48  163.0   0.0    1.2e-47  162.8   0.0    1.1  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.8   0.0   6.6e-52   1.2e-47      65     425 ..     102     460 ..      48     464 .] 0.78

  Alignments for each domain:
  == domain 1  score: 162.8 bits;  conditional E-value: 6.6e-52
                 TTCEESSHHHHHHHHH.TTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCC.CCHCSEEETHHHHHHHHHHHHHHHHHSS CS
        p450  65 efsgrpdeallatsrk.pfkgkgvlfangekwkklRrfltptltsfgkl.sleelveeeaedlveklrkk.agesselditellskaaldvigsilFga 160
                 +++gr    +++  +  p + + + +++ + +++lR  l+p  t++     le+ +++ + +lv+ +r++ +++++ +d +el+s+++ldv+++i+Fg+
  KKY14442.1 102 YVKGR----WFKGMKFdPRMDNLLSMSDEKAHTELRAKLMPGYTGK-EVpDLESDMDDRIIELVDLIRRDyVDKNEAMDFAELVSYFTLDVLTKIAFGR 195
                 44444....44444330555555666677***************99.777***************998752677779********************** PP

                 HHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH.HHTCCSCHHHHHHHHHHHHHHHHH..HHHHHHHHHCHCHC....SCSSCSHHHHHHHHCTTC CS
        p450 161 rfdlledeklselvkaveelssllskssvqllllfp.llkylptkllrklkeavkklkdll..dklieerretldsa....kksrrdfldalllakkek 252
                 +++ l ++++  l ++ +     +  ++++l    p +l +l ++  + +     k+ d +   ++i e ++ + ++     k+  d+l  +++     
  KKY14442.1 196 SLGFLIKNQD--LYDYHKST-AAF-YPFMELSSNHPtVLAFLNSRAMKGAA---PKPTDKIgfGAIIGEVHKAVAERfapdGKKIPDMLGSFINH---- 283
                 ***8877755..55444444.333.57777888888455555444444333...33333331145666666666666566678899999999999.... PP

                 TCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHC.CTTT...T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESS CS
        p450 253 kgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevl.gdkr...eptyddlqklpyldavikEtLRlhpvvplllpRevt 347
                      l+++e   + l  ++aG d t+++l+ +++++++nP++ +klr+E+  ++  ++     +t  + ++lpyl+a+ikE LR+  ++  l  R+ +
  KKY14442.1 284 ----GLTQQECEVESLLQILAGADSTATALRTTFLFILTNPTAYAKLRNEVIATVaTGNAvypVITSTQTKELPYLQACIKEGLRMFMPLQGLAGRVSP 378
                 ....6*********************************************99999544449******************************77777776 PP

                 S.CEEETTEEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS..CTESSCTT--TTEEGGGS-TTHHHHHHHHHHH CS
        p450 348 k.dvvirgylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg..nskrksfaflPFGaGpRnCiGerlArmelklf 425
                     +i+g++ip G+ev +++ya++++ +++ p++++F+peR+ld++   +++ +    l FGaG+  C+G+++A+mel  +
  KKY14442.1 379 PgGDTINGVFIPGGIEVGISTYAMNHRRDFYgPDADTFRPERWLDNDPasIKEYERTNELVFGAGRSTCLGKGIAMMELGKA 460
                 6899******************************************9966555677778*******************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2974.91
//
Query:       KKY14443.1  [L=755]
Description: putative bifunctional catalase peroxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-85  285.9   0.0    4.6e-44  150.8   0.0    2.2  2  peroxidase  Peroxidase
  ------ inclusion threshold ------
       0.07   13.3   0.0         23    5.3   0.0    2.5  2  GST_C_3     Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> peroxidase  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.8   0.0   5.1e-48   4.6e-44      10     228 ..      72     411 ..      63     412 .. 0.88
   2 !  133.1   0.0   1.3e-42   1.2e-38       2     227 ..     418     717 ..     417     719 .. 0.89

  Alignments for each domain:
  == domain 1  score: 150.8 bits;  conditional E-value: 5.1e-48
                 CC........TTTHCHHHHHHHHHHHTT.......SSTTSCHHHTCCHHCSGGGTTTHHHHHHHHHHHHHCTT.....S-HHHHHHHHHHHHHHCTT-- CS
  peroxidase  10 ka........drdmgpsllrlafhdcfv.......gGcdgsvlllepektapaNaslrkgldvldaikakleaacpgvvScADlialaardavelaggp 93 
                 ++         +++g+ ++r+a+h++++       gG   + ++++p +++p+N sl+k++++l++ik+k++++    +S+ADl+ l +++a+e +g +
  KKY14443.1  72 TDsqewwpadFGHYGGLFIRMAWHSAGTyrvfdgrGGGGEGQQRFAPLNSWPDNVSLDKARRLLWPIKQKYGNK----ISWADLLLLTGNVALESMGFK 166
                 444444444578899999****************96777779******************************95....********************* PP

                 ..--EE---S-SSGGG.S-S..................................................................-.-TS-HHHHHHH CS
  peroxidase  94 lvpvslGRrDatessa.sev.snl..............................................................Pdptasvdelrdk 128
                  + ++ GR D++e+++ +++                                                                  Pdp a ++++r++
  KKY14443.1 167 PFGFAGGRADTWEADEsVYWgG-EttwlgndvrysdgnvglkgsgvvdsdehkkdhsdihsrdlekplaaahmgliyvnpegpdgvPDPVAAARDIRTT 264
                 88**************999954.359*****************************************************99999999************ PP

                 HHHHT--HHHHHHH.HGGGGC-EESHH................SS-GGGT.....HHS................EETS-STHHHHHHCC.......... CS
  peroxidase 129 farkgltdeelvaL.sGaHtiGkahcssfs.rly.a...aadpaldaayaae.kCasgnte........lvdldtptkfdnsyfknlle.......... 202
                 f r+ ++dee+vaL +G+Ht+Gk+h++  s  +  +   a++++++ ++ ++ ++ +g           ++ ++tptk++n+y + l++          
  KKY14443.1 265 FGRMAMDDEETVALiAGGHTFGKTHGAAPSqHVGkEpagASIEQQGLGWDNSfNSGKG--PhtitsgleVIWTKTPTKWSNNYLEYLFKyeweltkspa 361
                 *************************997775444436676777777777766644222..2235456655555599*********************** PP

                 ........................T-EEEHHHHHHHHSCCCHHHHHHCCC CS
  peroxidase 203 ........................krgllrsDqvllsdsetralvekyae 228
                                           ++l++D++l  d+ ++++ +++ e
  KKY14443.1 362 ganqwkakdaqafipdaydankkhLPTMLTTDLSLRFDPAYEKISRRFLE 411
                 **********************9999*******************99976 PP

  == domain 2  score: 133.1 bits;  conditional E-value: 1.3e-42
                 HHHHHHCCCC.TTTHCHHH.........HHHHHHH.......................................HTT........SSTTSCHHHTCCHH CS
  peroxidase   2 rafvkaalka.drdmgpsl.........lrlafhd.......................................cfv........gGcdgsvlllepek 43 
                 +af +a++k  +rdmgp +         ++l+++d                                       +          gG++g++++l+p+k
  KKY14443.1 418 DAFSRAWFKLlHRDMGPRTrwlgpevptEELIWEDpipavnhpligdsdiaalkkeilgsgvdgtkflstawasA-StfrgsdkrGGANGARIRLAPQK 515
                 67899************77788899999**********************9999999998888888777766551.056688999************** PP

                 CSGGGT..TTHHHHHHHHHHHHHCTT.......S-HHHHHHHHHHHHHHCTT--..--EE---S-SSGGG.S-S.....-............-TS-HHH CS
  peroxidase  44 tapaNa..slrkgldvldaikakleaacpg..vvScADlialaardavelaggplvpvslGRrDatessa.sev.snl.P...........dptasvde 124
                 +++ N+  +l+++l +l+ ++++++ ++++  +vS+ADli+la+ +a+e+a+g  vp+++GR Da+++++ + + + l P           +++ ++++
  KKY14443.1 516 DWKVNNpqQLSEVLSALEGVQKSFNGSQTDgkKVSLADLIVLAGSAALEKAAGVPVPFTPGRMDASQEQTdIASfEHLePlvdgfrnygksTSRVRTEQ 614
                 *************************97754457******************99978**************76665444745555556665477889999 PP

                 .HHHHHHHHT--HHHHHHH.HGGGGC-EESHH...........SS-GGGT....HHS........EETS-STHHHHHHCC................... CS
  peroxidase 125 .lrdkfarkgltdeelvaL.sGaHtiGkahcssfsrlyaaadpaldaayaaekCasgntelvdldtptkfdnsyfknlle................... 202
                  l+d+++ ++l+++el++L +G++t+ +++                          g+++ v++++p++++n++f+nll+                   
  KKY14443.1 615 fLVDRAHLLTLSAPELTVLvGGLRTLNTNYD-------------------------GSSHGVFTKRPGQLTNDFFVNLLDtntawkesgdeiyegvdrk 688
                 9*****************************2.........................334478889********************************** PP

                 ....T-EEEHHHHHHHHSCCCHHHHHHCC CS
  peroxidase 203 ....krgllrsDqvllsdsetralvekya 227
                     k++++r+D+v++s++e+ra++e+y 
  KKY14443.1 689 sgekKWTATRADLVFGSHAELRAIAEVYG 717
                 ***************************97 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0028        25      49      66 ..     142     159 ..     139     171 .. 0.80
   2 ?    5.3   0.0    0.0026        23      27      70 ..     523     566 ..     506     602 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0028
                 STTS--HHHHHHHHHHHH CS
     GST_C_3  49 vgdklTyADlalfqvldg 66 
                 +g+k+++ADl+l++   +
  KKY14443.1 142 YGNKISWADLLLLTGNVA 159
                 69*********9875555 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0026
                 HHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH CS
     GST_C_3  27 erlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleea 70 
                 ++l ++l+++e v k+ +g    g+k+++ADl++++   +le+a
  KKY14443.1 523 QQLSEVLSALEGVQKSFNGSQTDGKKVSLADLIVLAGSAALEKA 566
                 56778888888888866666888***********9988888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 5159.92
//
Query:       KKY14444.1  [L=457]
Description: hypothetical protein UCRPC4_g06720 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3198.76
//
Query:       KKY14445.1  [L=352]
Description: putative glycosyl hydrolase family 76 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.6e-107  358.2  16.8   7.9e-107  357.9  16.8    1.0  1  Glyco_hydro_76  Glycosyl hydrolase family 76
  ------ inclusion threshold ------
      0.015   14.2   0.2        2.4    7.0   0.1    2.0  2  Glyco_hydro_47  Glycosyl hydrolase family 47


Domain annotation for each model (and alignments):
>> Glyco_hydro_76  Glycosyl hydrolase family 76
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.9  16.8  8.8e-111  7.9e-107      97     365 ..      14     288 ..       3     289 .. 0.96

  Alignments for each domain:
  == domain 1  score: 357.9 bits;  conditional E-value: 8.8e-111
                     HHHHHH......H--HHHHHHHHHHHHHHHHCB-SCSCCS-BBSEC..ESS--SEEEHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHS CS
  Glyco_hydro_76  97 mtaaernfpep.tdepswLalAqavfntqasrwdeetcgGGlrWqiftwnsgydyknsisngplfqlaarLarytgnetYlewAekvwdWvedvg 190
                     m+aae nfp+p +depswL+lA avfn+qas+wd++tcgGGlrWq+f++n+gy++kn+isng++fqlaarLarytgn+tY++wAek++dW+++++
      KKY14445.1  14 MDAAESNFPAPeSDEPSWLSLAVAVFNFQASEWDTKTCGGGLRWQVFQFNQGYNLKNTISNGGFFQLAARLARYTGNDTYAQWAEKTYDWMASSP 108
                     8********************************************************************************************** PP

                     CS..BTTTS-B-SEEETTTCCEEEE---HHHHHHHHHHHHHHHHHHH.--HHHHHHHHHHHHHHHHHCEEC..TTEEEEEE-TTSTTCCTTHHHH CS
  Glyco_hydro_76 191 li..ddedwlvyDgasvednctdinklqwtYnqGtylsgaaylynaT.gdekWldrvkgllnatlstffpd..gnilyevacepsekcnnDqrsF 280
                     l+  d    + +D+ + ++nc+d+++l wtYn+Gt+++ga y+yn+T g+++W  r+++l+n+t  +f ++  +n+++ev ce s +cn+Dq s+
      KKY14445.1 109 LMtnDGGALTLWDNSDANNNCSDVSHLVWTYNAGTMIAGASYMYNYTnGSDVWAGRLTQLINGTSTYFPTQygSNVMSEVECEVSANCNSDQSSY 203
                     **666667899*****************************************************6666666*************999******** PP

                     HHHHHHHHHHHH..SHHHHHHHHHHHHHHHHHHHTTTB...TTTSB-TTTTTSSCCHHHHHHHHCCHHH............HHHH CS
  Glyco_hydro_76 281 kgilarwlaltaqlapetadtiepllrasaeaaakscsggsdgttcglkwlkgtwdgdaglgeqmsaleviqallveekkaplta 365
                     k++l+rwla  +qlap+ta +i+p+l asa+ aa++c gg++g++cg +w+++twdg++g+g+qmsal+vi a+l++ + apl+a
      KKY14445.1 204 KAYLSRWLAVCTQLAPFTATEIQPKLYASAQGAAAQCIGGTNGRMCGRRWYSTTWDGSSGVGQQMSALSVIGANLMKPSIAPLSA 288
                     ****************************************************************************998777765 PP

>> Glyco_hydro_47  Glycosyl hydrolase family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1   0.00026       2.4     147     191 ..      73     116 ..       1     130 [. 0.67
   2 ?    6.2   0.0   0.00046       4.1     276     353 ..     128     208 ..     108     258 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00026
                     HHHCSSHHHHHHHHHHHT-CHHHHHHHCCHHHHHCHCC.HHHTTB CS
  Glyco_hydro_47 147 AelgslslEftrLsqlTgdkkYedlaervtkaleelqektklpgl 191
                     ++ g ++l  +rL++ Tg+++Y++ ae++++ ++++   t+  g 
      KKY14445.1  73 SNGGFFQL-AARLARYTGNDTYAQWAEKTYDWMASSPLMTNDGGA 116
                     55555555.579*******************99987655555554 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.00046
                     EE-EEEGGG.GHHHHHHHHHHHTT.-H.HHHHHHHHHHHHHHHHHHHTSTTS---SEEEE-SS.....S-ECTSSSSEEE- CS
  Glyco_hydro_47 276 lspeidhLs.cFlgGllalgakll.ek.eedlelAkkltegcvkayeatktglmPEifevkpcesaeecewneekkdealk 353
                        +++hL+ ++ +G+++ ga+ + +  ++    A +lt+ +  + + ++t+ + ++++  +ce +++c++++++++ +l+
      KKY14445.1 128 NCSDVSHLVwTYNAGTMIAGASYMyNYtNGSDVWAGRLTQLINGTSTYFPTQYGSNVMSEVECEVSANCNSDQSSYKAYLS 208
                     445677776367789999998888655466666799*************************************99999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.55
# Mc/sec: 1936.48
//
Query:       KKY14446.1  [L=467]
Description: putative o-methyltransferase family 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-06   27.9   0.0    8.5e-06   26.7   0.0    1.6  1  Methyltransf_24  Methyltransferase domain
      4e-05   22.9   0.0    7.2e-05   22.0   0.0    1.4  1  Methyltransf_3   O-methyltransferase
    0.00042   20.1   0.0     0.0007   19.3   0.0    1.3  1  CmcI             Cephalosporin hydroxylase
  ------ inclusion threshold ------
      0.069   13.6   0.1       0.41   11.1   0.1    2.2  2  Terminase_4      Phage terminase, small subunit
       0.71   10.8   3.1        1.9    9.4   0.4    2.6  3  DUF3235          Protein of unknown function (DUF3235)


Domain annotation for each model (and alignments):
>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.4e-09   8.5e-06       1      92 [.     348     453 ..     348     457 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.4e-09
  Methyltransf_24   1 vEiGvysGvstlwllralrrnga.......grlvavdhdpg.aeeaaalareaglddrvrlikadseealasla........agsiDllfiDgg 78 
                      +E G+y G+++++l+++lr+           ++++v+ d++ a+ a+ ++r+agl+d+v+++++++++al++l          g++ l+++D  
       KKY14446.1 348 IEQGSYIGYTSVFLGSLLRDIVWegklekgCKVYSVEMDKTcASIARHMIRKAGLEDIVDVVEGEASSALKDLVlkgnlkmdGGEVGLVLLD-- 439
                      589*****************766678999999********655556777777*******************8888898999999999***99.. PP

  Methyltransf_24  79 haaeavledleall 92 
                      h  + + +d+e + 
       KKY14446.1 440 HWEKFYVQDIEIMT 453
                      88888888888765 PP

>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0     2e-08   7.2e-05      48     119 ..     344     424 ..     315     461 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2e-08
                     --EEEEE--TTSHHHHHHHT.........TS-TT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHHHHHHTSS CS
  Methyltransf_3  48 akrvleiGvftGyslLatal.........alPeDGkilaididreayeialkfiqkagvaekieliegdalkvLeelvkdk 119
                      k ++e G + Gy+ + +           +l +  k+ ++++d+  + ia+++i+kag+++ +++ eg+a ++L++lv + 
      KKY14446.1 344 PKVIIEQGSYIGYTSVFLGSllrdivwegKLEKGCKVYSVEMDKTCASIARHMIRKAGLEDIVDVVEGEASSALKDLVLKG 424
                     57778888888885443332011111222455666899*************************************998654 PP

>> CmcI  Cephalosporin hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0     2e-07    0.0007      30      96 ..     341     415 ..     333     452 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2e-07
        CmcI  30 elkPdliietGiahGGsalfsasllall......kskrkvlaididir..eknrqaieahplasrieliegssvd 96 
                 +lkP++iie G+  G   +f  sll+ +      ++ +kv ++++d    +  r+ i++  l++ + ++eg++ +
  KKY14446.1 341 QLKPKVIIEQGSYIGYTSVFLGSLLRDIvwegklEKGCKVYSVEMDKTcaSIARHMIRKAGLEDIVDVVEGEASS 415
                 79**************************9**999999******99875225678899999999999999886443 PP

>> Terminase_4  Phage terminase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00011      0.41      64      94 ..      38      68 ..      16      72 .. 0.73
   2 ?   -1.1   0.0      0.73   2.6e+03      57      91 ..     150     198 ..     119     202 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
  Terminase_4 64 avtilnsaekelrklaselGLtpssRarlaa 94
                   ++ ++ +k+  +las+ G+tps R++l  
   KKY14446.1 38 SKSATQTPTKTQTTLASDVGMTPSKRSKLDS 68
                 44567778899999**************976 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.73
  Terminase_4  57 g.......akkknpavt.......ilnsaekelrklaselGLtpssRar 91 
                  +         +  pav         ++++ +e++  +s + L p+ R  
   KKY14446.1 150 TrrnggllSPQITPAVDrikdgnvSKEDLVAEVLDTLSTFHLQPQIRES 198
                  2344456777777888788888888889999999999999999988866 PP

>> DUF3235  Protein of unknown function (DUF3235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       4.4   1.6e+04      27      43 ..      38      54 ..      24      58 .. 0.55
   2 ?    9.4   0.4   0.00053       1.9       3      66 ..      98     162 ..      97     169 .. 0.89
   3 ?    0.4   0.0      0.34   1.2e+03      35      55 ..     277     297 ..     259     299 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.4
                HHHHHHHHT--HHHHHH CS
     DUF3235 27 aqkavadlaatsdelav 43
                 + a++   +t+++la+
  KKY14446.1 38 SKSATQTPTKTQTTLAS 54
                33333444455555555 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00053
                 TTS--HHHHTTT..S-HHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHTTT----HHHH CS
     DUF3235   3 nSAPtpRdaaaa.qapApvaaaaataqkavadlaatsdelavDavydalkdalakaGiavpaqvt 66 
                 nS  tpR+aa + q  +p +   a+   a +d++ + +++++D+v++  k   +++G  + +q+t
  KKY14446.1  98 NSPVTPRKAAKTvQFSSPEKRSYAEISSALEDTSPSRKAAELDDVFTTPKSSTRRNGGLLSPQIT 162
                 8999****877779999******************************999999998877777776 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.34
                 T--HHHHHHHHHHHHHHHHHH CS
     DUF3235  35 aatsdelavDavydalkdala 55 
                 a+++   +vD++y +++d+ +
  KKY14446.1 277 AREAILNQVDELYAQIVDEDN 297
                 55666679********99755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3481.12
//
Query:       KKY14447.1  [L=1870]
Description: putative kinesin family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.1e-112  375.3   0.0   3.4e-112  374.7   0.0    1.3  1  Kinesin        Kinesin motor domain
    5.5e-42  144.0   0.1    1.4e-41  142.7   0.1    1.8  1  DUF3694        Kinesin protein
    1.9e-38  132.4  12.4    1.3e-31  110.2   0.5    3.6  4  Kinesin_assoc  Kinesin-associated
    7.1e-25   87.7   0.0    1.9e-24   86.3   0.0    1.7  1  Microtub_bd    Microtubule binding
    9.3e-25   87.4   0.4    1.1e-23   83.9   0.0    2.8  2  VWA_2          von Willebrand factor type A domain
    3.1e-07   30.7   0.9      1e-06   29.1   0.9    2.0  1  KIF1B          Kinesin protein 1B
    1.4e-05   25.0   0.0    3.5e-05   23.7   0.0    1.6  1  Ssl1           Ssl1-like
    1.4e-05   25.3   0.9    5.9e-05   23.3   0.1    2.5  3  FHA            FHA domain
     0.0011   19.2   0.0     0.0037   17.6   0.0    1.9  1  Yop-YscD_cpl   Inner membrane component of T3SS, cytoplasmic 
  ------ inclusion threshold ------
        3.4    7.1   9.0        3.5    7.1   3.4    2.9  2  Exonuc_VII_L   Exonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  374.7   0.0  1.9e-115  3.4e-112       1     333 []      14     362 ..      14     362 .. 0.96

  Alignments for each domain:
  == domain 1  score: 374.7 bits;  conditional E-value: 1.9e-115
                 EE-SSSHHHHTTTTEBCEEEEC.........TCTCEEEEEEEEECTTSCEEEEESEEEETTS-.......HHHHHHHHHHHHHHHHHTTSEEEEEEEES CS
     Kinesin   1 RvRplnekekeeeeeeevevee.........ekkeeekkskkenkeeeekkfkFdkvfdeeat.......qeevyeetakplvesvleGynatifaYGq 83 
                 RvRp+n++e +++++++v++++          ++e+ kk   ++  e +k+f+Fdk +++ +        q+++++++ +pl++++++Gyn +ifaYGq
  KKY14447.1  14 RVRPFNNREIDRKAKCIVQMKDsqtvltpppDAEERLKKGGGKAALEGTKTFAFDKSYWSFNRsdshyagQNNLFSDLGSPLLDNAFQGYNNCIFAYGQ 112
                 9******************9999******9877777888888899999*********9996666789999***************************** PP

                 TTSSHHHHHTBCTTTSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHH CS
     Kinesin  84 tgsGKTyTmegkeeeeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevl 182
                 tgsGK+y+m+g   e++G+ipr+++++Fe+i + +++++ +++v+vsylEiYne+++DLL++    +k +lk+re++++g  yv++l +  v+s++e+ 
  KKY14447.1 113 TGSGKSYSMMGY-GEDAGVIPRICRNMFERIGEIQKDSNVQCTVEVSYLEIYNERVRDLLNPA---TKGNLKVREHPSTG-PYVEDLAKLVVRSFQEIE 206
                 ***********8.999**********************************************9...4567********98.****************** PP

                 HHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTC.EEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHT... CS
     Kinesin 183 ellekgeknrkvaetklneeSSRSHavftitleqknlkeete.ekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaek... 277
                 +l+++g+k r+va+t++ne+SSRSHavft+tl+qk+++ et+ ++ k++k++LvDLAGsEra++tg a+g rlkE+a+iN+SL++Lgrvi+aLa+    
  KKY14447.1 207 NLMDEGNKARTVAATNMNETSSRSHAVFTLTLSQKRHDVETNmDTEKVAKISLVDLAGSERATSTG-ATGARLKEGAEINRSLSTLGRVIAALADLssg 304
                 **************************************99997669********************.5899***********************99999 PP

                 ..CCTSTSCGGGSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 278 ..kkskhipYRdSkLTrlLqdsLgGnsktlmivtvspssenleetlstlkfaerakei 333
                   k+++++pYRdS LT+lL+dsLgGns t+mi+ +sp++ n+eetlstl++a+ ak+i
  KKY14447.1 305 kkKNASMVPYRDSVLTWLLKDSLGGNSMTAMIAAISPADINFEETLSTLRYADSAKRI 362
                 99999***************************************************87 PP

>> DUF3694  Kinesin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.7   0.1   7.8e-45   1.4e-41       1     153 [.    1183    1331 ..    1183    1332 .. 0.98

  Alignments for each domain:
  == domain 1  score: 142.7 bits;  conditional E-value: 7.8e-45
     DUF3694    1 eYvpVpvdpkkevd..vFqLrqglqrrvvvtltqrsedeLlwervrfppgrevrvgdvrlldlskgkskdseslsadlslkllseptveesadgtse 95  
                  +Y pV+v +++e d  ++qL+qglqrrvvv+lt++s+++++w+++     +++rvgdv+l+d s+gk +d +  ++d++lk ++ep++++s dgts+
  KKY14447.1 1183 QYLPVEVVQASEADvgAYQLHQGLQRRVVVSLTHSSTESFPWDDL-----NNLRVGDVHLVD-SMGKITDLDAFTPDIALKQIQEPMIKDSPDGTST 1273
                  59**********9666*****************************.....************.9********************************* PP

     DUF3694   96 vkieasWdsslhdsllLnrvTkdgervyltvavdlvseeveepvvfrkeicvriygrd 153 
                  ++i ++Wdsslh+sllL+r+T+d++++++++a+d+ s ++e+ ++fr++ +++i++r+
  KKY14447.1 1274 ITIIGQWDSSLHNSLLLDRTTSDKNKIQISLAWDILSPRIEQTMTFRLRQQLQILPRS 1331
                  ********************************************************97 PP

>> Kinesin_assoc  Kinesin-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       3.4   6.2e+03      49     107 ..     218     252 ..     166     274 .. 0.53
   2 !   29.3   0.0   4.6e-10   8.3e-07       1      33 [.     366     398 ..     366     408 .. 0.91
   3 !  110.2   0.5     7e-35   1.3e-31      76     181 .]     414     516 ..     401     516 .. 0.91
   4 ?   -1.6   0.8       1.5   2.6e+03      93     133 ..     774     814 ..     688     833 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.4
  Kinesin_assoc  49 laseraknlsavtaavaglspssslsalssraesvssleerivfspaseeaierlkete 107
                    +a+++ +++s+  +av +l+ s                           + +e  ++te
     KKY14447.1 218 VAATNMNETSSRSHAVFTLTLSQK------------------------RHDVETNMDTE 252
                    222222222222333332222222........................22233333333 PP

  == domain 2  score: 29.3 bits;  conditional E-value: 4.6e-10
  Kinesin_assoc   1 avinedPnaklvrelkeeverlkdlllaqgled 33 
                    av+nedPna+++relkee+++l+  l a g + 
     KKY14447.1 366 AVVNEDPNARMIRELKEELAQLRSKLGAGGAGG 398
                    8*************************9988765 PP

  == domain 3  score: 110.2 bits;  conditional E-value: 7e-35
  Kinesin_assoc  76 lssraesvssleerivfspaseeaierlketekiiaelnetWeeklrkteairlereallaelGvairedGGtlGvfsPkktPhlvnlnedPlmse 171
                    l+++  s+s+ + ++    ++ e +e+l+++ek+  +ln+tWeekl+kte+i+ erea l+elG++i++  G +G+ +Pkk Phlvnl +dPl++e
     KKY14447.1 414 LEKQMVSISQADGSV-KKVSKAEIVEQLNQSEKLYKDLNQTWEEKLQKTEEIHKEREAALEELGISIEK--GFIGLTTPKKMPHLVNLSDDPLLAE 506
                    566677888888888.667899*********************************************87..6************************ PP

  Kinesin_assoc 172 CllyyikdGi 181
                    Cl+y++k+G+
     KKY14447.1 507 CLVYNLKPGM 516
                    ********96 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1.5
  Kinesin_assoc  93 spaseeaierlketekiiaelnetWeeklrkteairlerea 133
                       +ee  e+l+ +e   + +    +ek r  +a+r  +e+
     KKY14447.1 774 NGQKEEYAEKLRAAEVPTSGVETLKQEKERMEQALRAAKEE 814
                    34445556666655555555555555555555555554443 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.0   1.1e-27   1.9e-24      20     149 .]       7     171 ..       6     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 1.1e-27
                  TB-EEEEEEECCCS-T......EEEETTT...............................TTTEEEE-SEEEECTTHCCCCCCCC.HHHHHHHHTT-- CS
  Microtub_bd  20 GniRvfarvrpelesek.....akikfpe............................eekkkkkefsFdrvfeseseqeevfeei.sqlvqsaldgyn 83 
                  Gni v +rvrp +++e      + +++++                            +    k  +sF+r  ++ + q+++f+++ s l++ a++gyn
   KKY14447.1   7 GNIKVVVRVRPFNNREIdrkakCIVQMKDsqtvltpppdaeerlkkgggkaalegtkTFAFDKSYWSFNRSDSHYAGQNNLFSDLgSPLLDNAFQGYN 104
                  9************998788887555555355677778888899999999976666544445555566666666666999999998578********** PP

                  EEEEEEES................ST-HCHHHHHHHHHHCCTS.CCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd  84 vcifaygqTGsGKtyTmegeeeeagmipraveeifetiselke.kgwkyeielqfveiynekvqDlL 149
                   cifaygqTGsGK+y m+g  e+ag+ipr+ +++fe i e ++  + + ++e++++eiyne+v+DlL
   KKY14447.1 105 NCIFAYGQTGSGKSYSMMGYGEDAGVIPRICRNMFERIGEIQKdSNVQCTVEVSYLEIYNERVRDLL 171
                  ************************************9977654399********************8 PP

>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.74   1.3e+03      67      92 ..     795     818 ..     769     826 .. 0.77
   2 !   83.9   0.0   6.4e-27   1.1e-23       1     105 [.    1577    1686 ..    1577    1688 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.74
       VWA_2  67 rnleakgggtnlaaaLqlarkalkkr 92 
                 + l+  + + ++++aL+ a+++++++
  KKY14447.1 795 ETLK--QEKERMEQALRAAKEEFEEQ 818
                 4444..579999********999865 PP

  == domain 2  score: 83.9 bits;  conditional E-value: 6.4e-27
       VWA_2    1 lvfvlDtSgSmrngdygptrleaakdaveallk....slpgdrvglvtfsd.gpevlipltkdkakilnalrnleakgggtnlaaaLqlarkalkkr 92  
                  +++++D+S+S rngdy p+r+ a+ +av+ +++    ++p++ vgl+++++ gpevl++lt+d +kil+ l++++++ g+++l +a+q a  alk+r
  KKY14447.1 1577 TMIIVDNSESSRNGDYLPSRFGAQTEAVNIIFSaktqANPESSVGLMSMGGrGPEVLVTLTTDMGKILEGLHRTKIS-GDSHLSTAIQVAGLALKHR 1672
                  79******************************97664559***********88**********************95.******************* PP

       VWA_2   93 r.kgekrvivlitD 105 
                  + k+++++i+++t+
  KKY14447.1 1673 QnKSQRQRIIVFTC 1686
                  ************97 PP

>> KIF1B  Kinesin protein 1B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.9   5.7e-10     1e-06       1      48 [.     958     999 ..     958     999 .. 0.98

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 5.7e-10
       KIF1B   1 LenRlvdMRemYeeskegesrsh.svdtseslsgsDPFyEs.qenhsLiG 48 
                 L+ Rl++MR+m+++ +++e+ +h ++d        +PF E+ q+ +s+iG
  KKY14447.1 958 LRHRLQKMRQMHQYLDRPEYIQHfRLD--------NPFCEPsQPRFSFIG 999
                 789************************........**************9 PP

>> Ssl1  Ssl1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.9e-08   3.5e-05       1     136 [.    1580    1713 ..    1580    1717 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.9e-08
                  EEE-SGGGGSSSSSS-HHHHHHHHHHHHHHHHHHHSTT-EEEEEEEETTEEEEEEEEES-HHHHHHHHHHHTTS---S---HHHHHHHHHHHHSSS- CS
        Ssl1    1 vlDlsrameekdlkpsrlavviklleefveeffdqnPisqlgliavkdkkaekltelsGnprkhikaLkslreveakgepsLqnaLelalasLkkvp 97  
                  ++D s++  + d  psr+  + ++++   +   + nP s +gl+++  +  e l +l+ +  k ++ L+     +++g++ L  a+++a   Lk+  
  KKY14447.1 1580 IVDNSESSRNGDYLPSRFGAQTEAVNIIFSAKTQANPESSVGLMSMGGRGPEVLVTLTTDMGKILEGLHRT---KISGDSHLSTAIQVAGLALKHRQ 1673
                  68*******************************************************99888777776655...5********************** PP

                  TTSEEEEEEEE-.SS----SS-HHHHHHHHHHTT-EEEEE CS
        Ssl1   98 shasrevliifs.slstcDPgdiyetidelkkekirvsvi 136 
                    ++r  +i+f+ s    D   ++++ +++kk+++ +  +
  KKY14447.1 1674 NKSQRQRIIVFTcSPIDEDEKSLVKLAKRMKKNNVSIDFV 1713
                  *****99999862667788899999999999999987766 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0         4   7.2e+03      16      29 ..     225     238 ..     218     262 .. 0.80
   2 !   23.3   0.1   3.3e-08   5.9e-05       4      69 .]     526     586 ..     524     586 .. 0.94
   3 ?   -3.7   0.0       8.8   1.6e+04      33      46 ..     719     732 ..     713     736 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4
                 TTSTTTEEEEEEET CS
         FHA  16 psiSrkHalikfdk 29 
                 ++ Sr Ha+++ + 
  KKY14447.1 225 ETSSRSHAVFTLTL 238
                 5679****997654 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 3.3e-08
                 ESSTTSSEETTSTTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEET CS
         FHA   4 GRssdcdivlddpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigkgepveLksgdvielG 69 
                 G +++c i+l+ ++i  +H+ ++++++   v ++       ++vNg ri k  p +L+sg +i lG
  KKY14447.1 526 GNEKRCEIRLNGSRILPQHCSFENTDN--IVSIIP-SEGAAVMVNGLRIDK--PKRLRSGNRIILG 586
                 55689**********************..******.68999*********9..**********998 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 8.8
                 EEEEEEESSSSSEE CS
         FHA  33 kvyleDlgSknGtf 46 
                 ++ ++D   +nGt 
  KKY14447.1 719 SFLVRDKYMSNGTI 732
                 6899**999***96 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.1e-06    0.0037      22      86 ..     526     590 ..     512     597 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.1e-06
                   ES-TT-SEE---TTS-TT-EEEEEETTEEEEEE-CESS--EETTEE-SECC.--TTSEEEETTEEE CS
  Yop-YscD_cpl  22 GsdedcDivLsDkevsrkhlkLeveeesvrledlgsrngllvngerveele.lrpgdvlelGttel 86 
                   G +++c+i L+ + + ++h++ e +++ v++    ++  ++vng r+++ + lr g+++ lG +++
    KKY14447.1 526 GNEKRCEIRLNGSRILPQHCSFENTDNIVSII-PSEGAAVMVNGLRIDKPKrLRSGNRIILGDFHI 590
                   88999**************************9.999************8888**********9874 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.3     0.073   1.3e+02     162     251 ..     375     467 ..     193     492 .. 0.63
   2 ?    7.1   3.4    0.0019       3.5     128     217 ..     787     880 ..     667     975 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.073
  Exonuc_VII_L 162 rlleekkqrleklasrlks................peellerkrqrldeleerleralkkqlkkkrerleelkerlk....ekleekkerlkklker 238
                   r+++e k++l +l+s+l                  p++ le++  +++++  ++++  k ++ ++ ++ e+l + l+    ekl++++         
    KKY14447.1 375 RMIRELKEELAQLRSKLGAggaggiggeigseaypPDTPLEKQMVSISQADGSVKKVSKAEIVEQLNQSEKLYKDLNqtweEKLQKTE--------- 462
                   3334444444444444421223333333333333344444444444444444444443333333333333333333211212222222......... PP

  Exonuc_VII_L 239 lelleekkerlee 251
                           e ++e
    KKY14447.1 463 --------EIHKE 467
                   ........22222 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0019
  Exonuc_VII_L 128 apTPtaaAelvvpdkaeleeqleelerrlekaikrlleekkqrleklasrl.....k.speellerkrqrldeleerleralkkqlkkkrerleel 217
                   a+ Pt   e + ++k+++e+ l+++++++e++++r+ e   ++l++l+ +      +  p+el+er+++  + + +r ++  ++ ++ +++ l+++
    KKY14447.1 787 AEVPTSGVETLKQEKERMEQALRAAKEEFEEQLRRQKEAFDEELKELKLTPqrprpQpLPHELTEREKSIAKTVLDRWSQ--RNFVRIAESMLQNA 880
                   34455555555555555555555555555555555555555555555433221122112344444444444443333333..12222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1870 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1408  (0.078532); expected 358.6 (0.02)
Passed bias filter:                      655  (0.036533); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.30u 0.35s 00:00:01.65 Elapsed: 00:00:00.57
# Mc/sec: 9797.16
//
Query:       KKY14448.1  [L=1052]
Description: putative atp-dependent protease la [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-63  213.7   0.0    3.7e-63  212.8   0.0    1.5  1  Lon_C           Lon protease (S16) C-terminal proteolytic dom
    5.2e-33  114.7   0.0    1.7e-32  113.0   0.0    1.9  1  LON_substr_bdg  ATP-dependent protease La (LON) substrate-bin
    8.1e-22   78.1   0.0    2.5e-21   76.5   0.0    1.9  1  AAA             ATPase family associated with various cellula
    1.5e-06   28.4   0.0    4.9e-06   26.8   0.0    1.9  1  AAA_2           AAA domain (Cdc48 subfamily)
    1.7e-06   28.0   0.0    3.9e-06   26.9   0.0    1.7  1  AAA_5           AAA domain (dynein-related subfamily)
    3.2e-05   24.2   0.1    0.00047   20.5   0.1    2.5  1  AAA_22          AAA domain
    4.1e-05   22.7   0.2    8.2e-05   21.7   0.0    1.5  2  AAA_PrkA        PrkA AAA domain
    7.9e-05   22.4   0.1    0.00065   19.5   0.0    2.5  3  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
    8.8e-05   22.3   0.0    0.00021   21.2   0.0    1.6  1  ChlI            Subunit ChlI of Mg-chelatase
    0.00032   21.1   1.1     0.0017   18.8   0.1    2.7  1  AAA_16          AAA ATPase domain
     0.0059   16.6   0.4     0.0059   16.6   0.4    2.9  3  ClpB_D2-small   C-terminal, D2-small domain, of ClpB protein
     0.0091   16.5   0.8      0.073   13.6   0.0    2.8  3  AAA_18          AAA domain
  ------ inclusion threshold ------
      0.012   15.4   0.1      0.081   12.6   0.0    2.1  2  IstB_IS21       IstB-like ATP binding protein
       0.02   15.0   0.0      0.051   13.6   0.0    1.7  1  AAA_14          AAA domain
      0.039   14.2   0.9      0.087   13.0   0.1    2.0  2  DUF4276         Domain of unknown function (DUF4276)
       0.04   13.8   0.2        1.4    8.8   0.0    3.0  3  NTPase_1        NTPase
      0.046   13.6   0.0       0.14   12.1   0.0    1.8  1  RsgA_GTPase     RsgA GTPase
      0.055   13.2   0.0       0.13   12.0   0.0    1.5  1  AAA_30          AAA domain
      0.069   13.5   0.0       0.21   12.0   0.0    1.8  1  RNA_helicase    RNA helicase
      0.083   13.0   0.1       0.48   10.5   0.0    2.3  2  SKI             Shikimate kinase
       0.11   11.9   0.6       0.24   10.9   0.0    1.7  2  AAA_7           P-loop containing dynein motor region
       0.13   12.3   0.0       0.31   11.0   0.0    1.6  1  F-box-like_2    F-box-like domain
       0.27   11.6   2.0        5.3    7.5   0.3    3.1  2  DNTTIP1_dimer   DNTTIP1 dimerisation domain
       0.66    9.7   8.4       0.29   10.9   3.5    2.2  2  DUF445          Protein of unknown function (DUF445)
        1.2    9.6   4.6       0.82   10.2   0.0    2.8  2  ABC_tran        ABC transporter


Domain annotation for each model (and alignments):
>> Lon_C  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.8   0.0   5.2e-66   3.7e-63       2     202 ..     814    1019 ..     813    1022 .. 0.95

  Alignments for each domain:
  == domain 1  score: 212.8 bits;  conditional E-value: 5.2e-66
                  E-TTTTHHHH-S-SS--SSSSS--BSSEEEEEEEETTEEEEEEEEEEE.....ESS-S-EEEEES--HHHHHHHHHHHHHHTSS-GGGSS-SS-TTT CS
       Lon_C    2 vtakeleellGkkrfrseeaekedqvGvvtGlawtevGGdlltieavl.....lpgkgklkltGklgdvmkesaqaalsyvrsraeelgidkevfek 93  
                  +++++l++++G ++f+s++   +   Gv++Glawt++GG  l++e+ +      + +  l+ tG+l+dvmkes  +a+s+ +s +++   ++++fe+
  KKY14448.1  814 ISKDNLKDYVGPPVFTSDRLYDTTPPGVAMGLAWTSMGGAALYVESIVesalsHSSRPGLERTGNLKDVMKESTLIAYSFAKSLVANRYPENKFFEH 910 
                  8899***************************************9976511111446789************************************** PP

                  -EEEEEE-S-B-GGGGGGGHHHHHHHHHHHHTS--B-TTBEE--EE-TT-BEE--S-HHHHHHHHHHTT-SBEEEEGGGGGGTTTS-HHHHTS-B-- CS
       Lon_C   94 kdihihvPeGavPkdGPsaGvtlatalvslltgkkvrkdvamtGeitLrGrvlpiGGlkekllaakragikkvilPkenekdlediPeevreeleii 190 
                  +++h+h PeGav kdGPsaG+t+at+l+sl  +k+++  +amtGe+t++G+vl iGGl+ek++aa+rag +k+++P++n  d e++Pe++re++e +
  KKY14448.1  911 AKVHLHCPEGAVQKDGPSAGITMATSLLSLALNKSIDPTLAMTGELTVTGKVLRIGGLREKTVAARRAGATKILFPRDNLGDWEELPENIREGIEGH 1007
                  ************************************************************************************************* PP

                  EESBHHHHHHHH CS
       Lon_C  191 lveevdevlkaa 202 
                  +v+++ +v++ +
  KKY14448.1 1008 AVDWYGNVFDIV 1019
                  *******99876 PP

>> LON_substr_bdg  ATP-dependent protease La (LON) substrate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   0.0   2.3e-35   1.7e-32       2     208 .]     134     393 ..     133     393 .. 0.84

  Alignments for each domain:
  == domain 1  score: 113.0 bits;  conditional E-value: 2.3e-35
  LON_substr_bdg   2 lpllpldnkvlfPgitlpltvsrpksiaaierlldkdkpyigvflv..kesqkdaideesiselysvGtvarIvqil..rlddgrikvvlegleR 92 
                     ++++p+ +++lfPg++  +t+++ ++ +ai++++++++py+g fl   + s+kd+id+   +e+++vG++a+I+       +++++  vl++++R
      KKY14448.1 134 VMAIPIGKRPLFPGFYKAITIRDSNVSKAIQEMMSRGQPYVGAFLFkdEASDKDVIDS--MDEVHDVGVFAQITSAFpmHGEENSLTAVLYPHRR 226
                     67899*****************************************433666666666..***************9954444789********** PP

  LON_substr_bdg  93 vkikkl.ekekeegylvaeveiiedd...............................................s.epedsdslqkelkalvqeii 138
                     +k+  l  ++k++g  ++ev+    +                                               +  +e  d+++ +++a ++ei+
      KKY14448.1 227 IKMSALlPPKKDQGTSTGEVQAER-VskqsgdspgdivasfeehnkdqttgevqhyeptaflrkypvslvnvdNlSEEPVDKKSPVIRAVTSEIV 320
                     ***999888888888888885543.2477888888888888888888888888888888********999887354444444457********** PP

  LON_substr_bdg 139 ekikk.....slarellkllleielllkyedlenpyrLadlvaailpfsneekqelLeeldvedRlkkvlelLkr 208
                     + +k+      l+r +++ ++  ++    +++e+p++Lad++aa+ +++  e+q++L+ l+ve Rl+k+l  Lk+
      KKY14448.1 321 NVFKDvanlnPLFRDQISTFSMSQS--AGNVIEEPAKLADFAAAVSAGEVGELQDVLQDLNVESRLQKALVVLKK 393
                     ****97665449********74444..457789*************************************99985 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.0   3.4e-24   2.5e-21       1     126 [.     544     680 ..     544     686 .. 0.94

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 3.4e-24
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS.........STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellsk.........yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLl 90 
                 ++++GppG+GKT++ k++a+ l+++++++s+  l++          yvg+ + +i + +k++++++    ++iDE+d++++         + +  ++Ll
  KKY14448.1 544 LCFVGPPGVGKTSIGKSIARALNRQYYRFSVGGLTDVaeikghrrtYVGALPGRIIQALKKCQTEN--PLILIDEVDKIGRGH-------QGDPSSALL 633
                 589********************99999999999966889999999*****************998..9**********8888.......999****** PP

                 HHHHHTTTS............SSTEEEEEEESSGGGSTHHHHSTTSSE CS
         AAA  91 teldgvkkk............eskvivigatnrpdkldpallrgRfdr 126
                 + ld ++++             skv++++++n  d+++++ll +R++ 
  KKY14448.1 634 ELLDPEQNSsfldhymdipvdLSKVLFVCTANMTDTIPRPLL-DRMEL 680
                 *********************999******************.9*986 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   6.8e-09   4.9e-06       7     134 ..     545     671 ..     540     727 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 6.8e-09
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---.----THHHHHHHHH..TTT-HHHHTTSEEEEETGGG-------------HHHHHHHHHH CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselle.eeevehlvsrliga..ppgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqi 102
                  ++gp gvGkt + k++a+ l+ ++  ++ +   ++++e +   +++v  l g   +   + + e+  +l+DE+dKi +    + d S      +LL +
  KKY14448.1 545 CFVGPPGVGKTSIGKSIARALN-RQYYRFSVGGLTDVAEiKGHRRTYVGALPGRiiQALKKCQTENPLILIDEVDKIGR--GHQGDPS-----SALLEL 635
                 599*******************.78888888888888884444445555554431133333444555************..5555555.....689999 PP

                 HH--EE-...----.--EE-TT-EEEEEE--TTHHH CS
       AAA_2 103 leggtlt...dkqg.rkvdtknilfImtgafgsski 134
                 l+  + +   d++   +vd +++lf++t ++  + +
  KKY14448.1 636 LDPEQNSsflDHYMdIPVDLSKVLFVCTANMTDTIP 671
                 995443334466665***************987665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   5.4e-09   3.9e-06       2      82 ..     544     625 ..     543     678 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 5.4e-09
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--..........--------.G-SEEEEESGGG--HHHH CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngtts.lvdsplvraar.egeilvlDEveraesevl 82 
                 ++ vGppG+gK+++ +++a+alnr++        t  +++kg+r++  g    +  ++l+ +++ e  ++++DEv+++ +  +
  KKY14448.1 544 LCFVGPPGVGKTSIGKSIARALNRQYYRFSVGGLTDVAEIKGHRRTYVGALPgRIIQALK-KCQtENPLILIDEVDKIGRGHQ 625
                 799******************************************864444303334444.4446999********9976544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   6.5e-07   0.00047       5     112 ..     541     636 ..     538     665 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 6.5e-07
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav.ielliiDEaqh 102
                  +il+ +G++G+GKT   + +++ l         +++++++ + ++t       +++++ g+++ +      +l  ++ qal+++++  +l++iDE+++
  KKY14448.1 541 GKILCFVGPPGVGKTSIGKSIARAL---------NRQYYRFSVGGLT-------DVAEIKGHRRTY----VGALPGRIIQALKKCQTeNPLILIDEVDK 619
                 6899*********************.........9998888888888.......556666654444....667889*********************** PP

      AAA_22 103 lr...s....eealeeL 112
                 +    +     ++le L
  KKY14448.1 620 IGrghQgdpsSALLELL 636
                 97655144434444444 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.1       8.2   5.9e+03      89     115 ..     427     453 ..     422     462 .. 0.72
   2 !   21.7   0.0   1.1e-07   8.2e-05      56     114 ..     509     567 ..     497     579 .. 0.89

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 8.2
    AAA_PrkA  89 qilyllGPvggGksslverlkklleaa 115
                  i   lG  + Gk  lve++k+  ++ 
  KKY14448.1 427 GIRRELGIESDGKDKLVEKFKEKAQKL 453
                 555567777889999999999876654 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 1.1e-07
    AAA_PrkA  56 ypafeedffGleetiekiveyfraaaqrleerkqilyllGPvggGksslverlkkllea 114
                  ++++ed +Gl+++ ++i+e++     r+ ++ +il ++GP g Gk+s+ +++ ++l+ 
  KKY14448.1 509 MTVLDEDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNR 567
                 567899***********************************************999976 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     9e-07   0.00065       7      62 ..     514     570 ..     510     586 .. 0.87
   2 ?   -3.2   0.0       8.8   6.3e+03     126     155 ..     651     680 ..     649     682 .. 0.85
   3 ?   -2.2   0.0       4.3   3.1e+03      53      80 ..     857     884 ..     841     887 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 9e-07
      RuvB_N   7 eeyigqekvkeklkifieaakkreealdhvl.lyGpPGlGkttlakiiakelgvklk 62 
                 e++ g ++vk+++  fi+  k r++    +l ++GpPG+Gkt++ k ia+ l+ +  
  KKY14448.1 514 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILcFVGPPGVGKTSIGKSIARALNRQYY 570
                 578899********************99998578****************9998765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.8
      RuvB_N 126 ikldlpkftlvgattragllssPlrdrfgi 155
                 i +dl+k  +v ++  + ++  Pl dr+ +
  KKY14448.1 651 IPVDLSKVLFVCTANMTDTIPRPLLDRMEL 680
                 5688999999999999999*******9876 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 4.3
      RuvB_N  53 iakelgvklkitsgPvlekagdlaallt 80 
                 + + +++ l ++s P le++g+l  +++
  KKY14448.1 857 VESIVESALSHSSRPGLERTGNLKDVMK 884
                 555577889999*********9988775 PP

>> ChlI  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.9e-07   0.00021      52     121 .]     920     989 ..     871     989 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.9e-07
        ChlI  52 adlkkeGsafDLpiAigilaaleqieaeeetlflGeLsldGslrpvkgvlpialaakkegikkvivpken 121
                   ++k+G++  +++A ++l+ + +++ + ++ + GeL  +G++ ++ g+ + ++aa+++g +k++ p++n
  KKY14448.1 920 GAVQKDGPSAGITMATSLLSLALNKSIDPTLAMTGELTVTGKVLRIGGLREKTVAARRAGATKILFPRDN 989
                 5589***************************************************************988 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   2.3e-06    0.0017      24      76 ..     541     594 ..     523     637 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.3e-06
      AAA_16  24 pelvllsGesGvGKsslvrellralekdggiflrgkcdql.esaipysalaqal 76 
                 + ++ ++G++GvGK+s+ ++++ral++++  f  g  ++  e + ++ +++ al
  KKY14448.1 541 GKILCFVGPPGVGKTSIGKSIARALNRQYYRFSVGGLTDVaEIKGHRRTYVGAL 594
                 38999***********************88886666666522222222344444 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.9       5.8   4.1e+03      10      40 ..     384     414 ..     375     418 .. 0.81
   2 ?   -2.1   0.0         6   4.3e+03       4      39 ..     457     491 ..     456     493 .. 0.76
   3 !   16.6   0.4   8.2e-06    0.0059       6      59 ..     691     744 ..     688     755 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5.8
                    HHHHHHHHHHHSCTTTEEEEEHHHHHHHHHH CS
  ClpB_D2-small  10 vdlalkklekrlkergvelevtdealdalae 40 
                    +++al  l+k l++ +++ ++++++ +++ +
     KKY14448.1 384 LQKALVVLKKELMNAQLQSKISKDVESKIQK 414
                    6788999999999999999999999887766 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 6
                    HHHHHHHHHHHHHHHHHSCTTTEEEEEHHHHHHHHH CS
  ClpB_D2-small   4 eelkkIvdlalkklekrlkergvelevtdealdala 39 
                    e++kk+ +++l+kl+  l+    e++vt + ld++ 
     KKY14448.1 457 EAVKKVFEEELNKLAH-LEPAASEFNVTRNYLDWIT 491
                    5678888888888864.5567788899999999987 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 8.2e-06
                    HHHHHHHHHHHHHHHSCT.TTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHH CS
  ClpB_D2-small   6 lkkIvdlalkklekrlke.rgvelevtdealdalaekgydpeyGARpLrriiqre 59 
                     k I+d  l+ ++k l+  ++v+++++++a++ l++k y +e G R+L++ i++ 
     KKY14448.1 691 KKAIADRYLAPQAKELSGlKEVDVKLDESAIEELINK-YCRESGVRNLKKQIEKV 744
                    578*************9989***************98.99************985 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.3       3.9   2.8e+03      26      82 ..     389     446 ..     378     470 .. 0.56
   2 !   13.6   0.0    0.0001     0.073       2      25 ..     545     574 ..     544     624 .. 0.81
   3 ?   -2.3   0.0       8.4     6e+03      87     103 ..     898     919 ..     863     922 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 3.9
      AAA_18  26 vnlrdvakenglllevdpealdeskrldedkldklldaleenss...aleegknlvidgh 82 
                 v+l++ + + +l     ++   esk+ ++++   l+++++++++    + +gk+ +++ +
  KKY14448.1 389 VVLKKELMNAQLQSKISKD--VESKIQKRQREYWLMEQMKGIRRelgIESDGKDKLVEKF 446
                 5555555566666666666..555555555555555555555555553333333344443 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 0.0001
      AAA_18   2 lltGtpGvGKttlakeLskrlgf......g 25 
                 +  G+pGvGKt+++k +++ l+       +
  KKY14448.1 545 CFVGPPGVGKTSIGKSIARALNRqyyrfsV 574
                 678***************998555555543 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 8.4
      AAA_18  87 eseaakdikk.....vvLtasp 103
                 +  ++ ++k+     v+L++++
  KKY14448.1 898 VANRYPENKFfehakVHLHCPE 919
                 3333334344444459999986 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00011     0.081      46     116 ..     540     616 ..     501     640 .. 0.64
   2 ?   -0.4   0.0       1.1   8.2e+02      83     127 ..     721     766 ..     713     768 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00011
   IstB_IS21  46 kkenivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrd......gklaralkrllkv.dllilDd 116
                 + + ++++Gp+GvGK+ +  +++++  r+ ++ +   ++d+ +e+k +rr       g++ +alk+++    l+++D+
  KKY14448.1 540 EGKILCFVGPPGVGKTSIGKSIARALNRQYYRFSVGGLTDV-AEIKGHRRTyvgalpGRIIQALKKCQTEnPLILIDE 616
                 45568999****************99999888776666664.344444432222222455555555444324555555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.1
   IstB_IS21  83 vedLveelkrarrdgklaralkrllkv.dllilDdlgllpldqaea 127
                 +e+L+++  r+ +  +l+++++++ +  +l i+ dlg + l +++a
  KKY14448.1 721 IEELINKYCRESGVRNLKKQIEKVYRKsALKIIQDLGEEALPEEAA 766
                 6789999999999999999999887654899******999887765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.2e-05     0.051       2      77 ..     541     626 ..     540     677 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.2e-05
      AAA_14   2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderd....kkladpe........kllelileklkeekktylflDEiqev.....p 77 
                 +kil+ +G+  vGKT + k +++ l    +++  +++   +d    k ++  +        ++++++++  +  ++ ++++DE+ ++      
  KKY14448.1 541 GKILCFVGPPGVGKTSIGKSIARALN---RQYYRFSVGGLTDvaeiKGHR--RtyvgalpgRIIQALKKC-Q-TENPLILIDEVDKIgrghqG 626
                 68999*****************9988...888888877766643332222..124563333444444443.3.5899*******998666552 PP

>> DUF4276  Domain of unknown function (DUF4276)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   0.00012     0.087      67     144 ..     388     476 ..     327     505 .. 0.80
   2 ?   -2.0   0.1       4.8   3.5e+03     101     101 ..     762     762 ..     717     805 .. 0.47

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00012
     DUF4276  67 veeleralke.didskgderfipyiqlhefEawlladpealk........ekseslsklkkirkefsnPenindgpktapskr..leea 144
                 +  l+++l + + +sk ++++   iq +  E wl+ +++ ++         k++ ++k+k+ +++++ Pe+++ + ++++ k   le a
  KKY14448.1 388 LVVLKKELMNaQLQSKISKDVESKIQKRQREYWLMEQMKGIRrelgiesdGKDKLVEKFKEKAQKLAMPEAVKKVFEEELNKLahLEPA 476
                 44455544430444448999999**************************9999********************9988888875446555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.8
     DUF4276 101 a 101
                 +
  KKY14448.1 762 P 762
                 1 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.1   7.8e+02     113     153 ..     158     201 ..     154     207 .. 0.82
   2 ?    8.8   0.0     0.002       1.4       5      33 ..     547     577 ..     544     593 .. 0.75
   3 ?    0.1   0.0      0.94   6.8e+02      85     106 ..     598     619 ..     589     637 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.1
                 HHHHHHHHHHTTTSEEEEE--SS-...-SHHHHHHHT-TT-EEE CS
    NTPase_1 113 kfkeaveevLksekpvlavihrrk...dlalveeirerkdvkvf 153
                 ++++a++e++++++p ++ +  ++   d+++++++ e +dv vf
  KKY14448.1 158 NVSKAIQEMMSRGQPYVGAFLFKDeasDKDVIDSMDEVHDVGVF 201
                 67899************988666556899999999999998887 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.002
                 E--TTSSHHHHHHHHHHHH.....GGGEEEE CS
    NTPase_1   5 TGppGvGKtTlvkkvlellkss..gvkvgGf 33 
                  GppGvGKt + k ++++l+++   ++vgG+
  KKY14448.1 547 VGPPGVGKTSIGKSIARALNRQyyRFSVGGL 577
                 59*****************988334456665 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.94
                 HHHHHHHHHHHH-EEEE---ST CS
    NTPase_1  85 alealrkalseadviviDEiGk 106
                 +++al+k ++e+ +i+iDE+ k
  KKY14448.1 598 IIQALKKCQTENPLILIDEVDK 619
                 6889999999999******965 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00019      0.14      90     123 ..     532     565 ..     510     574 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00019
                  HHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  90 leelkellkdktsvlvGqSGvGKStLinallpel 123
                  + +l+  +++k+ ++vG+ GvGK+++ ++++  l
   KKY14448.1 532 VGKLRGTVEGKILCFVGPPGVGKTSIGKSIARAL 565
                  66899999*****************988887655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00018      0.13      19      67 ..     542     592 ..     535     625 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00018
      AAA_30  19 rvavltGpAGtGKttalkalreaweaag..grviglAptgkaAkvLaeelg 67 
                 ++ + +Gp+G GKt + k++++a++++   ++v gl+  ++     ++ +g
  KKY14448.1 542 KILCFVGPPGVGKTSIGKSIARALNRQYyrFSVGGLTDVAEIKGHRRTYVG 592
                 47889***************9999999612455555554444444444444 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00029      0.21       1      26 [.     544     569 ..     544     628 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00029
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl 26 
                   ++++Gp+g+GK+++ k++a+al +++
    KKY14448.1 544 LCFVGPPGVGKTSIGKSIARALNRQY 569
                   589*******************9887 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00067      0.48       1      20 [.     550     569 ..     550     571 .. 0.93
   2 ?   -1.7   0.0       3.9   2.8e+03      25      45 ..     739     759 ..     721     767 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00067
                 TTSSHHHHHHHHHHHHTSEE CS
         SKI   1 mGaGKstvGkllAkklglef 20 
                 +G+GK+++Gk +A++l++++
  KKY14448.1 550 PGVGKTSIGKSIARALNRQY 569
                 69***************987 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.9
                 HHHHHHHTS-HHHHHHHHHHH CS
         SKI  25 eliekrtgksiaeifeeegee 45 
                 + iek+ +ks+ +i+++ gee
  KKY14448.1 739 KQIEKVYRKSALKIIQDLGEE 759
                 334444444444444444444 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       5.2   3.7e+03      69      92 ..     396     418 ..     372     423 .. 0.58
   2 ?   10.9   0.0   0.00034      0.24      33      63 ..     541     571 ..     537     579 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.2
       AAA_7  69 fsaqtsanqlqdiiesklekrrkg 92 
                 ++aq + +++ + +esk++kr+++
  KKY14448.1 396 MNAQLQ-SKISKDVESKIQKRQRE 418
                 333333.34555678888888765 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00034
       AAA_7  33 kkpvllvGptGtGKtviikdllkkldkekyl 63 
                 +k +++vGp G+GKt+i k++ ++l+++ y 
  KKY14448.1 541 GKILCFVGPPGVGKTSIGKSIARALNRQYYR 571
                 56688********************977665 PP

>> F-box-like_2  F-box-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00043      0.31      29      66 ..     721     758 ..     716     795 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00043
  F-box-like_2  29 llelifkgCkdpayeplspslakayrrkrkhieylLaq 66 
                   + eli k+C++    +l++++ k yr+   +i+++L++
    KKY14448.1 721 IEELINKYCRESGVRNLKKQIEKVYRKSALKIIQDLGE 758
                   779*************************9999999975 PP

>> DNTTIP1_dimer  DNTTIP1 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.3    0.0074       5.3       4      52 ..     394     443 ..     393     466 .. 0.78
   2 ?    2.0   0.1      0.37   2.6e+02      17      41 ..     720     741 ..     717     780 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0074
  DNTTIP1_dimer   4 dLLrkvlQpainkevdevikkylrkvf.kpAveNireNlgeevvteadvq 52 
                    +L+ + lQ++i k+v+  i+k  r+++ ++ ++ ir+ lg e++ ++++ 
     KKY14448.1 394 ELMNAQLQSKISKDVESKIQKRQREYWlMEQMKGIRRELGIESDGKDKLV 443
                    69999************99999999864899*********9999776543 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.37
  DNTTIP1_dimer  17 evdevikkylrkvfkpAveNireNl 41 
                    +++e+i+ky r   + +v+N+++ +
     KKY14448.1 720 AIEELINKYCR---ESGVRNLKKQI 741
                    67777777774...45777777654 PP

>> DUF445  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   3.5    0.0004      0.29      86     304 ..     244     455 ..     213     502 .. 0.67
   2 ?    0.9   0.2      0.43   3.1e+02     102     286 ..     718     753 ..     601     817 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0004
      DUF445  86 aaiveellkeiledlddesikellkknlkkkleevipepllgkllellleeerhkkllddlldriknllkdeevkekikelidelieeesgklv.lesi 183
                  + ++e ++++  d   + + ++ ++n+ ++  ev+  +  + l +  ++  ++++l+++ +d+ + +++   ++  i +++++ ++ + + +    s 
  KKY14448.1 244 GEVQAERVSKQSGDSPGDIVASFEEHNKDQTTGEVQHYEPTAFLRKYPVSLVNVDNLSEEPVDKKSPVIRAVTSE--IVNVFKDVANLN-PLFRdQIST 339
                 555566666666666666666666666666666666666666666666666666666666666666666666666..777777776666.665544444 PP

      DUF445 184 vsmflreltsilekvksdpdhllreeedkkvreliadllndpelaakveklkkkklsdlevqeyeealwealkdlllkdlneeesllrerisklleklg 282
                  sm +++  +++e+   +++ ++      +   +++d+l+d +++ +++k +  + ++l++++ +++++++++++++k+ +e   +l e+++ + ++lg
  KKY14448.1 340 FSMSQSA-GNVIEEPA-KLADFAAAVSAGE-VGELQDVLQDLNVESRLQKALVVLKKELMNAQLQSKISKDVESKIQKRQRE-Y-WLMEQMKGIRRELG 433
                 4444444.55555555.3333333333333.346777777777789999999999999999999999999999999998888.5.88888888888888 PP

      DUF445 283 eklaedpklreklnkflenaaa 304
                  +   ++kl ek+++++++ a+
  KKY14448.1 434 IESDGKDKLVEKFKEKAQKLAM 455
                 7777777777777766655543 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.43
      DUF445 102 desikellkknlk....kkleevipepllgkllellleeerhkkllddlldriknllkdeevkekikelidelieeesgklvlesivsmflreltsile 196
                 +++i+el++k+ +    +                                                                                 
  KKY14448.1 718 ESAIEELINKYCResgvR--------------------------------------------------------------------------------- 735
                 222222222222222221................................................................................. PP

      DUF445 197 kvksdpdhllreeedkkvreliadllndpelaakveklkkkklsdlevqeyeealwealkdlllkdlneeesllrerisklleklgekla 286
                                                                                         +l+++i+k+ +k   k++
  KKY14448.1 736 ------------------------------------------------------------------------NLKKQIEKVYRKSALKII 753
                 ........................................................................111111111111111111 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2       2.4   1.7e+03      54     103 ..     381     443 ..     360     470 .. 0.61
   2 ?   10.2   0.0    0.0011      0.82      10      36 ..     540     566 ..     537     591 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.4
                 HHHCCHCEEEE-SS...--S-TTSBHHHH............HHHTCHHHHHHHSTTGGTTCBGES CS
                 xxxxxxxxxxxxxx...xxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  54 leslrkeigvlpqe...pqlfpeltvren............esdeeiekalsklglkelkdtvvk 103
                 +++l+k + vl++e   +ql+++++  +             +  e+++ ++++lg++ + ++++ 
  KKY14448.1 381 ESRLQKALVVLKKElmnAQLQSKIS--KDveskiqkrqreyWLMEQMKGIRRELGIESDGKDKLV 443
                 4555566666666654444444443..11334565555555555557777777777776555553 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0011
                 TTSEEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  10 egekvaivGenGaGKStLlkllagllk 36 
                 eg+++ +vG+ G GK+++ k +a+ l+
  KKY14448.1 540 EGKILCFVGPPGVGKTSIGKSIARALN 566
                 799*******************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1052 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1417  (0.079034); expected 358.6 (0.02)
Passed bias filter:                      753  (0.041999); expected 358.6 (0.02)
Passed Vit filter:                       108  (0.00602376); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 1.03u 0.35s 00:00:01.38 Elapsed: 00:00:00.54
# Mc/sec: 5859.24
//
Query:       KKY14449.1  [L=827]
Description: putative protein kinase domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-10   41.2   0.0    4.5e-09   36.1   0.0    2.3  1  Pkinase      Protein kinase domain
    5.5e-07   29.1   0.0    1.4e-05   24.6   0.0    2.4  1  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   5.1e-13   4.5e-09      27     261 ..     354     567 ..     341     568 .. 0.77

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 5.1e-13
                 EEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEE...EEEE--TTEBHHHHHH...HHSS--HHHHHHHHHHHHHHHHHHHHTT CS
     Pkinase  27 vAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdely...lvleyveggeladlle...rkgslseeeakkiakqilegleylHskg 118
                 +  K+i   +      +++l Ei+ l  l  ++ +++l  v+ +++  +   l+ +y+e+g + d++    + g +s ++ +++a+qi++gl+ +H++g
  KKY14449.1 354 YIKKEIPGPDSV----EEFLYEINALYALVaSKSVIQLQAVILDDSGSLvkgLLINYAEKGAMVDIIFdskETGGISWATRERWAEQIVTGLSEVHEAG 448
                 444444444333....56899***9998888*********9998665544889*********9999987756667************************ PP

                 EE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHH CS
     Pkinase 119 iiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvDvWslGvilyelltgkppfsgekgkekvekeldqleki 216
                 ++  D   +N+ +d  ++  i+D             +     ++  ++  +  ++y + k+D++ lG+ l+ l ++    +            ++    
  KKY14449.1 449 FVQGDFTLSNVVVDAMDDASIIDINRRGCPVG---WEPPELEKKIQSNQRI--SMYiGVKSDLFQLGMSLWALAMQDDEPE-----------RRE---- 527
                 **************999999999643333333...3345555555666666..5666***************966554444...........222.... PP

                 HHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTS CS
     Pkinase 217 lkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqh 261
                          + + +s++++  kd+++++l+k+pk+R++a+ell+h
  KKY14449.1 528 -----RPLSTGDFPSDVPRWYKDIVESCLCKNPKDRMSAKELLKH 567
                 .....1122356899****************************99 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.5e-09   1.4e-05      43     258 ..     363     567 ..     352     568 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.5e-09
                  HHHHHHHHHHHHHHTS.-BTTB--EEEEEE.SSSS..EEEEEE--TTEBHHHHHHHT.CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEE CS
  Pkinase_Tyr  43 eekeelleeakimkkl.khpnivkllgvct.keep..llivteyvkgGdLlkfLrkk.ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvL 135
                  ++ ee+l e++ + +l   + +++l +v++ ++++    ++++y+++G + + + ++ e+  ++  +  ++a q+  G++ +++  +v  d +  Nv+
   KKY14449.1 363 DSVEEFLYEINALYALvASKSVIQLQAVILdDSGSlvKGLLINYAEKGAMVDIIFDSkETGGISWATRERWAEQIVTGLSEVHEAGFVQGDFTLSNVV 460
                  55799***********9*************544444445899*********998665266789999999***************************** PP

                  EEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE........EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES- CS
  Pkinase_Tyr 136 lsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk........ftsksDvWsfGvllwEiftlgespypglkneevleklkegkrle 225
                  ++  + + i D      i         +++ +pv W +pE  k+ +        + +ksD +  G+ lw ++ + ++p ++       + l++g   +
   KKY14449.1 461 VDAMDDASIID------I---------NRRGCPVGWEPPELEKKIQsnqrismyIGVKSDLFQLGMSLWALAMQDDEPERRE------RPLSTG---D 534
                  **776666655......2.........45669********97776667789988889************9999666665433......334444...6 PP

                  BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHH CS
  Pkinase_Tyr 226 kpekcpeelyelmkkcweedpeeRptfselvek 258
                   p+++p+  ++++++c+ ++p++R + +el+++
   KKY14449.1 535 FPSDVPRWYKDIVESCLCKNPKDRMSAKELLKH 567
                  7999999999999***********999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (827 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.52
# Mc/sec: 4798.75
//
Query:       KKY14450.1  [L=248]
Description: putative protein rot1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-96  322.5   0.5    1.2e-96  322.3   0.5    1.0  1  Rot1      Chaperone for protein-folding within the ER, fungal


Domain annotation for each model (and alignments):
>> Rot1  Chaperone for protein-folding within the ER, fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.3   0.5  6.6e-101   1.2e-96       1     209 []      27     245 ..      27     245 .. 0.95

  Alignments for each domain:
  == domain 1  score: 322.3 bits;  conditional E-value: 6.6e-101
        Rot1   1 lvGtWssksnkvltGpgfydpveekliePsltGisysFteDGfyEealyrvvanpknpsCpkavlqfqHGtyeleangslvltPievDGRqllsdpCkk 99 
                 lvGtWs+ks+kv+tGpgfy+p  e+++ePsltGisysFt+DG++Eea+yr+v+np+npsCp++v+q+qHGt+++++ gsl+l+P++vDGRqlls+pC+ 
  KKY14450.1  27 LVGTWSTKSRKVITGPGFYNPETERFTEPSLTGISYSFTSDGYFEEAYYRAVSNPANPSCPSGVMQWQHGTFTKNSSGSLILKPFSVDGRQLLSEPCEY 125
                 89************************************************************************************************* PP

        Rot1 100 kkstytrynqselfkkyevlvdeyhgvkrlnlyqfdgspmqplylaykppqmlPtetlnptekase..kvkrsles......eeklkknavkkke..es 188
                 ++++ytry+q+e+f++y+v+vd yh++krl+lyqfdgspm+p+yl+y+pp+mlPt+tlnpt++a++  +vkr++++      +e  +k+a+ + +   +
  KKY14450.1 126 DTGVYTRYDQEETFERYSVYVDGYHNIKRLDLYQFDGSPMNPMYLVYDPPEMLPTSTLNPTSTAKSksRVKRDVDAgtedipQEAWNKDAILQPTrsFH 224
                 *************************************************************99988779999998898888877788888777763334 PP

        Rot1 189 lnadklwwvgvlllavgsval 209
                 ++ad +ww+gv+++a+g++++
  KKY14450.1 225 YDADLIWWTGVTFTALGGLLY 245
                 5699*************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.49
# Mc/sec: 1530.85
//
Query:       KKY14451.1  [L=219]
Description: putative 5-formyltetrahydrofolate cyclo-ligase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-38  132.8   0.0    1.5e-38  132.5   0.0    1.1  1  5-FTHF_cyc-lig  5-formyltetrahydrofolate cyclo-ligase family


Domain annotation for each model (and alignments):
>> 5-FTHF_cyc-lig  5-formyltetrahydrofolate cyclo-ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.5   0.0   8.3e-43   1.5e-38       1     186 [.       8     215 ..       8     216 .. 0.92

  Alignments for each domain:
  == domain 1  score: 132.5 bits;  conditional E-value: 8.3e-43
                     HHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHTSHHHHH-SEEEE----.TTS---HHHHHHHHHTTEEEEEEEECSSC........TEECEEEE CS
  5-FTHF_cyc-lig   1 KqelRkqllaalralseeevaaesealsqrieslkesqeakrvalyvsv.kgeidtkelikklleegkevllPrvrles........gslkvvrl 86 
                     Kq+lRk ++ +l+++s+e+v+ +s+++++ i +++e+q+ak va+y+s+  ge++t+ ++ ++l++gk+v++P++ ++s        +++ +++l
      KKY14451.1   8 KQQLRKSIQIRLNRVSHEDVSTQSQKVTNIILAMPEYQAAKSVAIYLSMpTGEVSTRDIVANALSQGKKVYVPYLVKNSqqdhaarkSKMAMLSL 102
                     9************************************************889************************9999*************** PP

                     EECCCCCCCCCHCTSSCE..--TTECCBCGGG..G-SEEEE--SEEETTS-EE-SSTTHHHHHHHHHTS.T-S.....S--EEEEE--GGGEES. CS
  5-FTHF_cyc-lig  87 ttlkeedslesgkyglke..Peeeeerelale..kldlvlvPgvAfdkeGaRlGkGkGyyDrflarlkg.gag.....dkpltvglaldeqlve. 170
                     +++++ + l+  k+g+++  P +  +r +al   kld++lvPg+Afd+   RlG+GkG+yDrfl ++++  a+     + p +v+lal++q++  
      KKY14451.1 103 HPQEDLKALKPDKWGIPSldPTSVGQRDDALGkgKLDMILVPGMAFDHGRRRLGHGKGFYDRFLWEYRNsLAEysehpKMPSLVALALRQQILPi 197
                     ***************6543388888888888799******************************9999875542222245789*********988 PP

                     ..-----ST----SEEE- CS
  5-FTHF_cyc-lig 171 ..rlPleehDvpvdevvt 186
                       ++P+ ehD p+d vv 
      KKY14451.1 198 eeKIPVGEHDWPMDVVVS 215
                     88*************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1462.75
//
Query:       KKY14452.1  [L=95]
Description: putative small nuclear ribonucleoprotein e [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-14   53.3   0.1    1.8e-14   53.2   0.1    1.1  1  LSM       LSM domain
     0.0078   15.8   0.1      0.011   15.3   0.1    1.3  1  Hfq       Hfq protein


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.1     2e-18   1.8e-14       3      66 ..      25      92 ..      23      93 .. 0.89

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 2e-18
                HHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTET....EEEEEEEEEEEGGGEEEEE CS
         LSM  3 lkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkk....ekrklglvliRGnnivlis 66
                l++ +   +++  +   +++G+++gfD+fmNlv++d++e+++ +k    + r+lg++l++G+n+ li+
  KKY14452.1 25 LQQRKTVSIWLYEQLTIRIEGKVRGFDEFMNLVIDDAVEVKQATKdtaeTRRQLGQILLKGDNVSLIQ 92
                666666677888888899***********************9999*******************9996 PP

>> Hfq  Hfq protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.3e-06     0.011       9      42 ..      24      59 ..      19      67 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.3e-06
                HHHCT-EEEEEETT..S-EEEEEEEEE-SSEEEEEE CS
         Hfq  9 lrkekipvtifLvn..GiklkGviksfDnftvlLes 42
                l +++ +v+i+L     i+++G++++fD+f+ l+ +
  KKY14452.1 24 LLQQRKTVSIWLYEqlTIRIEGKVRGFDEFMNLVID 59
                556788888888864479************977655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.30s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 618.25
//
Query:       KKY14453.1  [L=966]
Description: putative mrna transport regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-27   94.4   2.8    1.6e-26   93.1   0.5    3.0  3  Xpo1      Exportin 1-like protein
    2.5e-07   30.5   0.1    9.7e-07   28.6   0.1    2.1  1  IBN_N     Importin-beta N-terminal domain
  ------ inclusion threshold ------
       0.41   10.2   3.5        1.5    8.4   0.0    3.4  4  F-box_5   F-box


Domain annotation for each model (and alignments):
>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   0.5   2.7e-30   1.6e-26       1     149 []     105     246 ..     105     246 .. 0.97
   2 ?   -2.0   0.0      0.58   3.4e+03      74     103 ..     544     572 ..     540     595 .. 0.77
   3 ?   -3.9   0.0       2.2   1.3e+04      39      53 ..     742     756 ..     731     758 .. 0.75

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 2.7e-30
                 THHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCT.HHHHHHHHHHHHHHHHHHHTSHTTTSCHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
        Xpo1   1 pkflrnklaealaelflqeypnnWpsffddllsllssspsglelllriLkvlpeEiadfsrskleqer.rndlkdllrsnvqkilelllqileqsqskk 98 
                 pk +r++l+++la l++q+   +W++++ ++ s l ++++  +++l++L++lpeE+++ ++ +l++e+  +++++ll +n  ++l+ll+q+ ++s+s  
  KKY14453.1 105 PKPIRTQLCVCLASLAIQM--TSWKDVLATVGSTLGNDAW--DCILEFLRILPEEVTEGRKINLTEEElSERTQELLGNNSTQVLQLLIQYSQSSDS-- 197
                 688****************..****************777..67************************9************************9998.. PP

                 HHHHHHHHHHHHHHHHTTTS-HHHHHTSCHHHHHHHHCCSCCCHHHHHHHH CS
        Xpo1  99 qsselveavLkclsswvswidiglivnnpllnllfqlLsdpelreaavecL 149
                   +  +   ++c+ssw+++i+++ +v++pll+ ++ +++++ +++aav+cL
  KKY14453.1 198 --AAANPHLFDCISSWLREIPVSDVVKSPLLDRIITAINNEASFDAAVDCL 246
                 ..89**********************************************8 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.58
                 HHHHHHHHHHHHHHHHHHHHHHHCCHHHHH CS
        Xpo1  74 dllrsnvqkilelllqileqsqskkqssel 103
                 +ll+ + q+++++++++l++ + ++ ++e+
  KKY14453.1 544 KLLQGHSQQLHQFYESVLDKLKPSS-QEEV 572
                 6778889999999999999988664.3444 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHHHH CS
        Xpo1  39 psglelllriLkvlp 53 
                 +++  ++lriL+ l+
  KKY14453.1 742 EQQALVFLRILNELS 756
                 678889999999885 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.1   1.6e-10   9.7e-07       1      73 [.      33      99 ..      33     100 .. 0.96

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.6e-10
                HHHHHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHCGSXHHHHHHHHHHHHHHHH CS
       IBN_N  1 AekqLkqlekqpgflsallqilanseselevRqlAalyLknlitkhWsdeeekqslpseekeqIrnnllnllg 73
                A++ L++++k+ ++++    +l++ + + e++++Aa++Lk +it+         +lp + ++ +r++ll ll 
  KKY14453.1 33 AHEFLEKFQKSSEAWNVTHALLQSPDASVEAKLFAATTLKGKITYDLD------QLPVDAQQPLRDSLLSLLQ 99
                7899********************88888*******************......***************9986 PP

>> F-box_5  F-box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.26   1.6e+03       5      16 ..     138     149 ..     135     150 .. 0.83
   2 ?    8.4   0.0   0.00025       1.5       9      35 ..     318     344 ..     311     347 .. 0.83
   3 ?   -2.3   0.0      0.58   3.5e+03       7      17 ..     469     479 ..     466     480 .. 0.84
   4 ?   -1.0   0.7      0.23   1.4e+03      28      32 ..     673     677 ..     672     680 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.26
                 GGGTHHHHHCC- CS
     F-box_5   5 pDeVlecVlpyi 16 
                  +++++c+l+++
  KKY14453.1 138 GNDAWDCILEFL 149
                 5789******98 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00025
                 HHHHHCC---HHHHHHHTTS-HHHHHH CS
     F-box_5   9 lecVlpyitsprDRnAvSlVCkrWYei 35 
                 +e Vl+      DR+A+Sl    WYe+
  KKY14453.1 318 VEGVLECCMRDNDRDAISLTFLFWYEL 344
                 46677777789********99999997 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.58
                 GTHHHHHCC-- CS
     F-box_5   7 eVlecVlpyit 17 
                  Vl +V+p+i 
  KKY14453.1 469 SVLSQVIPLIV 479
                 69******995 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.23
                 S-HHH CS
     F-box_5  28 VCkrW 32 
                 VC++W
  KKY14453.1 673 VCRSW 677
                 ***** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (966 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.49
# Mc/sec: 5892.12
//
Query:       KKY14454.1  [L=662]
Description: putative c2h2 finger domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-63  214.2   0.0    2.3e-63  213.8   0.0    1.2  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.8   0.0   1.3e-67   2.3e-63       1     266 [.      68     367 ..      68     368 .. 0.98

  Alignments for each domain:
  == domain 1  score: 213.8 bits;  conditional E-value: 1.3e-67
  Fungal_trans   1 ldrffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsL 97 
                   + +++ + h q+pilhkp+f+ ++          +++llllaila+Ga+ +++ +++  +++  e ++f+ +++r+e   ++df++p++ lw+ q+L
    KKY14454.1  68 IGSYWYHQHAQLPILHKPTFNADK----------TPNLLLLAILAIGASTLDKLHGTHLTDTAAEFANFVVWHVRWELHRDADFRPPAK-LWVFQAL 153
                   579*********************..........*******************************************************.******* PP

  Fungal_trans  98 lllelyektssdralher...hhgvavr.larslgLhrnpsyvgkks........................lwklweeeaesrrRlwwaaFylDkti 166
                   ll+e+yek++ +ralher   hh  +++ ++r  +L ++++y ++ s                        +w++w+   e+ rR+++aaF+lD ++
    KKY14454.1 154 LLIEVYEKMYATRALHERghiHHDATLTlMRRGSSLVGRSPYDSPPSvrderpgrsssgpnsaidvpstdeSWNHWIR-NEATRRVAFAAFVLDSIH 249
                   ******************************************************************************.****************** PP

  Fungal_trans 167 alklGrppllddsqinlpLPcddddlwesddaseetlvetklsneeksrkiasfllaLkkilsk.............iagsllsiekqlqqrdlq.. 248
                   a+++G+   + +++++lpLPcd+  lw++++a+e+ +v+   s + ++ k+ +fl  Lkk l++             +ag lls++++++qrdlq  
    KKY14454.1 250 ATMFGHAAKMVAHEMRLPLPCDEA-LWSATSAAEVARVN--SSLQANGIKPILFLDGLKKTLNGqrvqtnsfgrtiiMAG-LLSVSWHMNQRDLQvt 342
                   ********99**************.**************..58*********************************7777.**************** PP

  Fungal_trans 249 .......seklswveeleraldnWr 266
                             ++w+  l ra+dnW+
    KKY14454.1 343 slgphnfGGRDKWRSALLRAFDNWK 367
                   ************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.50
# Mc/sec: 3949.42
//
Query:       KKY14455.1  [L=258]
Description: putative mob1 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-06   26.0   0.2    1.2e-05   25.4   0.2    1.3  1  Mob1_phocein  Mob1/phocein family


Domain annotation for each model (and alignments):
>> Mob1_phocein  Mob1/phocein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.2   6.7e-10   1.2e-05     113     166 ..       4      54 ..       1      57 [. 0.89

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 6.7e-10
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Mob1_phocein 113 vkkilkrlfrvyaHiYihHfeeiaeleleahlntcfkhfvlfvkeFkLidkkel 166
                   + +i++r++r++aH++++H+  + e+e +  l  +   f ++++ + Li ++++
    KKY14455.1   4 LTNIFRRVYRIFAHAWFQHRGVFWEVEGHDGLYVF---FKTVCDAYALIGEDNY 54 
                   679***************************99988...6789999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1071  (0.0597356); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 1737.88
//
Query:       KKY14456.1  [L=386]
Description: putative cobw domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-48  164.0   0.4    3.7e-48  163.4   0.4    1.2  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
    6.7e-05   22.7   0.0    0.00015   21.6   0.0    1.5  1  CobW_C           Cobalamin synthesis protein cobW C-terminal 
    0.00019   21.4   0.1       0.14   12.1   0.0    2.4  2  RsgA_GTPase      RsgA GTPase
    0.00087   19.4   0.0     0.0019   18.3   0.0    1.6  1  MMR_HSR1         50S ribosome-binding GTPase
     0.0051   17.2   0.0      0.011   16.1   0.0    1.5  1  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.012   15.2   0.0        5.2    6.6   0.0    2.4  2  GTP_EFTU         Elongation factor Tu GTP binding domain
      0.021   13.8   0.2        3.1    6.7   0.0    3.2  4  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.024   15.2   0.0       0.07   13.7   0.0    1.7  1  AAA_18           AAA domain
      0.033   14.5   0.2      0.099   12.9   0.0    1.9  2  AAA_22           AAA domain
      0.055   14.0   0.0       0.13   12.7   0.0    1.6  1  AAA_23           AAA domain
      0.056   12.5   0.1        0.1   11.6   0.1    1.4  1  T2SSE            Type II/IV secretion system protein
      0.058   13.4   0.2       0.16   12.0   0.0    1.7  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.066   13.2   0.0        0.2   11.7   0.0    1.9  1  AAA_14           AAA domain
      0.068   13.1   0.0       0.11   12.4   0.0    1.3  1  ATPase_2         ATPase domain predominantly from Archaea
      0.071   12.8   0.0       0.14   11.8   0.0    1.4  1  DpnII-MboI       REase_DpnII-MboI
      0.076   13.2   0.3         16    5.8   0.0    2.8  3  Glyco_hydro_30C  Glycosyl hydrolase family 30 beta sandwich d
      0.094   12.0   0.0       0.17   11.1   0.0    1.3  1  Zeta_toxin       Zeta toxin
       0.11   13.0   0.0       0.24   11.9   0.0    1.6  1  ABC_tran         ABC transporter
       0.15   11.3   0.3          3    7.0   0.0    2.2  2  Septin           Septin


Domain annotation for each model (and alignments):
>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.4   0.4   3.9e-51   3.7e-48       1     175 [.      50     252 ..      50     254 .. 0.94

  Alignments for each domain:
  == domain 1  score: 163.4 bits;  conditional E-value: 3.9e-51
                 EEEEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-SS.CHCCCCCCHCC.CT....EEEETTTTECCHCTT-HHHHHHHHHHHHTT-SEEEEEECTTT CS
        cobW   1 pvtvltGflGsGKTtLlnhllenraglklavivNefge.vsiDaellret.gve...ivelenGciCctlredllkelealeereerldviliEttGla 94 
                 p+t++tG+lG+GKTtLln +l++++g+k+avi+Nefg+  +i+++l  ++ g++   +++l+nGciCc++++  + ++e+l+er++ +d+il+EttGla
  KKY14456.1  50 PITIVTGYLGAGKTTLLNYILSEQHGKKIAVILNEFGDsADIEKSLTVNKdGEQveeWISLANGCICCSVKDSGVSAIESLMERQGAFDYILLETTGLA 148
                 789**********************************98899999987664333667****************************************** PP

                 THHHH..HTT.SHHHHHCCCECEEEEEEETTTH......................CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHHHHHHHHH CS
        cobW  95 ePapv..aft.eeelksdltldavvavvDaknl.....................eaeeekieekaedqlaaadllvlnKtDlldeeallekleerlrql 169
                 +P  +  +f+ ++ l s++ ld++v+vvDakn+                     ++++e++ ++a+ q+  ad++++nK+D ++e++l + + +r+r++
  KKY14456.1 149 DPGNIapIFWvDDGLLSSIYLDGIVTVVDAKNIlksldepalaetvdedneeyhSHDKEPTLTTAHLQISHADVILINKADIVTEAEL-DIVISRIRSI 246
                 *****998888*****************************************99889999999***********************77.********** PP

                 HTTS-E CS
        cobW 170 npeakv 175
                 n  ak+
  KKY14456.1 247 NGLAKI 252
                 *98886 PP

>> CobW_C  Cobalamin synthesis protein cobW C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.6e-07   0.00015      15      83 ..     310     383 ..     300     384 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.6e-07
      CobW_C  15 erleellee........elpegilRaKGivwlagkpdalvlqgvggrlrlepagawwaaededrrseLVfIGrdldk 83 
                 ++le +l++        ++  +i R KG+v + +   a v+qgv++ +++ + +   ++   +++ ++VfIGr+l++
  KKY14456.1 310 SELESWLQTllwndagqKKEYEIHRTKGYVPCTDG-SARVIQGVREIFEIIEVDGNRDD--LEKEGKVVFIGRGLEH 383
                 5688899998877776656689**********999.699************88888777..9************985 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00015      0.14     101     124 ..      51      74 ..      10      88 .. 0.84
   2 !    7.1   0.0    0.0051       4.8      48      77 ..     220     248 ..     183     271 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
                  EEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpele 124
                  ++++ G  G+GK+tL+n +l+e++
   KKY14456.1  51 ITIVTGYLGAGKTTLLNYILSEQH 74 
                  7999****************9865 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0051
                  EEEEEEE-GGG--HHHHHHHHHHHHHHTTS CS
  RsgA_GTPase  48 epvivlnKiDlleeeeeleelkeelealgy 77 
                    vi++nK+D+++e+e l+ + +++++++ 
   KKY14456.1 220 ADVILINKADIVTEAE-LDIVISRIRSING 248
                  4589************.9999999999963 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     2e-06    0.0019       3     102 ..      53     203 ..      51     229 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2e-06
                 EEEESTTSSHHHHHHHHHTS.....TEEESSSTTSSSSEEEE.EEEETTEE...................................EEEEECGGCSS.H CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge.....kaivsdkpgtTrdineg.rvklkgke...................................ielvDtpGlie.g 59 
                 ++ G+  +GK+tL+n ++ e      a + ++ g   di++  +v+++g++                                   ++l+ t Gl + g
  KKY14456.1  53 IVTGYLGAGKTTLLNYILSEqhgkkIAVILNEFGDSADIEKSlTVNKDGEQveewislangciccsvkdsgvsaieslmerqgafdYILLETTGLADpG 151
                 689**************974333335777999999999966515655555589999999999999999999999999999999999********76556 PP

                 HHHHH.HHHHHHHHHHCTSEEEEEEETT...........TTCSHHHHHHHHHHHH CS
    MMR_HSR1  60 aseek.glgkaflaleeadlillvvdas...........eeklkpldeeleelle 102
                 +     ++ + +l+ +  d i+ vvda+               + +de+ ee+ +
  KKY14456.1 152 NIAPIfWVDDGLLSSIYLDGIVTVVDAKnilksldepalA---ETVDEDNEEYHS 203
                 6666689*******999*********88776665443332...223333344433 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-05     0.011      21      63 ..      45      88 ..      35     109 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-05
      AAA_16 21 sgrp.elvllsGesGvGKsslvrellralekdggiflrgkcdql 63
                +g+  ++++++G+ G GK++l++ +l +  ++++ ++  ++ ++
  KKY14456.1 45 DGSKvPITIVTGYLGAGKTTLLNYILSEQHGKKIAVILNEFGDS 88
                344459********************988888888877666655 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0069       6.5       5      31 ..      51      77 ..      47     120 .. 0.79
   2 ?    6.6   0.0    0.0055       5.2      95     187 ..     170     358 ..     158     361 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0069
                EEEEEESTTSSHHHHHHHHHHHTTSSC CS
    GTP_EFTU  5 nigiighvDhGKtTLtdrLlyktgais 31
                  ++ g + +GKtTL+  +l + +  +
  KKY14456.1 51 ITIVTGYLGAGKTTLLNYILSEQHGKK 77
                567889999**********98877644 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0055
                 SEEEEEEETT...................TBSTHHHHHHHHHHHHTTTE..EEEEEESCGST.HHHHHHHHHHHHHHHHHH.................. CS
    GTP_EFTU  95 Dgavlvvdav...................eGvepqteevlrlalkegvp..iivfiNKmDrl.kaelkeiveevkqklsrk.................. 153
                 Dg v vvda+                   e   +  +e       +++    +++iNK+D + +ael+ +++ ++ ++  +                  
  KKY14456.1 170 DGIVTVVDAKnilksldepalaetvdednEEYHSHDKEPTLTTAHLQIShaDVILINKADIVtEAELDIVISRIR-SI--Nglakiqttehsrvprleg 265
                 666666666655544444444444443332233333333333333333334799********9888888888887.33..2234566667777777777 PP

                 .............................................................HHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHH CS
    GTP_EFTU 154 .............................................................eeklekygekgekevpvvfgSalkgegvktllea 187
                                                                              +++ e   +k    vp+  gSa   +gv++++e 
  KKY14456.1 266 flldvhaydgstelpafqakghshldptittiskplsifdpqriseleswlqtllwndagqKKEYEIHRTK--GYVPCTDGSARVIQGVREIFEI 358
                 77777777777777777777777777777777777777777777777777777777665433333223333..3677777777777777777665 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0033       3.1      34      63 ..      54      81 ..      26      88 .. 0.87
   2 ?   -0.5   0.0       0.5   4.7e+02     116     132 ..     130     147 ..     117     152 .. 0.81
   3 ?    2.6   0.0      0.06        56     169     183 ..     220     235 ..     214     264 .. 0.70
   4 ?   -2.2   0.0       1.7   1.6e+03     190     243 ..     317     370 ..     304     377 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0033
                EEE-TTSSHHHHHHHHHHHHHCTT--EEEE CS
        MeaB 34 ltGvPGaGkstlvealglelrrrGkrvavl 63
                +tG  GaGk tl++ +  e  ++Gk++av+
  KKY14456.1 54 VTGYLGAGKTTLLNYILSE--QHGKKIAVI 81
                8************998775..79*****98 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.5
                 HHHHTT.-SEEEEEEESS CS
        MeaB 116 lleaaG.fDvvlietvGv 132
                 l+e  G fD +l+et G 
  KKY14456.1 130 LMERQGaFDYILLETTGL 147
                 56666559*******996 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.06
                 -SEEEEE---.HHHHH CS
        MeaB 169 aDiivvnkaD.kkeae 183
                 aD+i +nkaD  +eae
  KKY14456.1 220 ADVILINKADiVTEAE 235
                 9*********855554 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1.7
                 HHHHHHCSTTBTTB--EEEEEBCCCTBSHHHHHHHHHHHHHHHHHTTHHHHHHH CS
        MeaB 190 raaleleeekekeWrpkvlktsavegeGidelvdaieehrevlkktGllekrrr 243
                 ++ l  +  ++ke++ +  k      +G +++++ ++e +e+++  G+++  ++
  KKY14456.1 317 QTLLWNDAGQKKEYEIHRTKGYVPCTDGSARVIQGVREIFEIIEVDGNRDDLEK 370
                 555555555555555444444444555666666666666666666666555544 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   7.4e-05      0.07       2      64 ..      53     111 ..      53     153 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.4e-05
      AAA_18   2 lltGtpGvGKttlakeL.skrlgfgvnlrdvakenglllevdpealdeskrldedkldklldal 64 
                 ++tG+ G+GKttl +++ s+    + + + v+ ++     + ++  + +   d +++++++++ 
  KKY14456.1  53 IVTGYLGAGKTTLLNYIlSEQ---HGKKIAVILNEFGDSADIEK--SLTVNKDGEQVEEWISLA 111
                 79**************94444...45555555544444444444..344444444444444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00011     0.099       7      56 ..      51      91 ..      47     121 .. 0.79
   2 ?   -2.6   0.0       6.3   5.9e+03      80     100 ..     209     228 ..     178     246 .. 0.46

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00011
      AAA_22  7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdl 56
                i++vtG  G+GKTtll+ +l++          + + + v l++ ++s+d+
  KKY14456.1 51 ITIVTGYLGAGKTTLLNYILSEQ---------HGKKIAVILNEFGDSADI 91
                799*****************998.........455555555555555555 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.3
      AAA_22  80 ealeqalraravielliiDEa 100
                 ++ + +l+  ++  +++i  a
  KKY14456.1 209 TLTTAHLQISHA-DVILINKA 228
                 222223333333.44444444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00014      0.13      20      39 ..      50      69 ..      38      71 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00014
      AAA_23 20 gltlItGpNGaGKTTildAi 39
                ++t++tG  GaGKTT+l+ i
  KKY14456.1 50 PITIVTGYLGAGKTTLLNYI 69
                89***************976 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00011       0.1     131     162 ..      51      82 ..      36      98 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
       T2SSE 131 lilvsGgTgsGKttllyallkeinksderivt 162
                 + +v+G  g GKttll+ +l+e + ++  +++
  KKY14456.1  51 ITIVTGYLGAGKTTLLNYILSEQHGKKIAVIL 82 
                 569*****************998777666665 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00017      0.16      21      42 ..      51      72 ..      25      80 .. 0.68
   2 ?   -2.5   0.0         5   4.7e+03      65      86 ..     211     237 ..     199     245 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00017
                EEEEEESTTSSHHHHHHHHHHH CS
        TsaE 21 vilLeGdLGaGKTtlvrglaka 42
                + + +G LGaGKTtl   ++++
  KKY14456.1 51 ITIVTGYLGAGKTTLLNYILSE 72
                37899***********999876 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5
                 S.....EEEEE-TT-SSTHHHHHCTTC CS
        TsaE  65 g.....lyHfDlYRledeeeleelgle 86 
                 +     + H+D+  +++++ ++e++l+
  KKY14456.1 211 TtahlqISHADVILINKADIVTEAELD 237
                 044455889998888777766666655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00021       0.2       3      45 ..      50      92 ..      48     113 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00021
      AAA_14  3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkk 45
                +i ++tG   +GKTtll+ +++e+  kk  ++  ++ d  d +
  KKY14456.1 50 PITIVTGYLGAGKTTLLNYILSEQHGKKIAVILNEFGDSADIE 92
                6899*****************9999444444444565555544 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00012      0.11      20      52 ..      49      81 ..      37     141 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
    ATPase_2 20 neiyfiYGpegsGKtaLlkeiienledkdkyvi 52
                 +i  ++G  g GKt+Ll+ i+++++ k+  vi
  KKY14456.1 49 VPITIVTGYLGAGKTTLLNYILSEQHGKKIAVI 81
                57899*******************988777665 PP

>> DpnII-MboI  REase_DpnII-MboI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00015      0.14      69     109 ..     167     207 ..     163     213 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00015
  DpnII-MboI  69 fllkslkiviEvKytrkskkekklieelaaDialYksdsky 109
                 ++l+ + +v+ +K + ks++e +l e + +D ++Y+s++k 
  KKY14456.1 167 IYLDGIVTVVDAKNILKSLDEPALAETVDEDNEEYHSHDKE 207
                 7899999*****************************99875 PP

>> Glyco_hydro_30C  Glycosyl hydrolase family 30 beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.046        43      21      31 ..      40      51 ..      30      55 .. 0.85
   2 ?    5.8   0.0     0.017        16      26      49 ..      74     101 ..      71     125 .. 0.81
   3 ?   -3.0   0.0       9.4   8.9e+03      31      44 ..     222     235 ..     220     260 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.046
  Glyco_hydro_30C 21 AFlnpDGsiv.v 31
                     +++npDGs+v +
       KKY14456.1 40 SYQNPDGSKVpI 51
                     69*******954 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.017
  Glyco_hydro_30C  26 DGsivvvilNr.ses...svtitvsdss 49 
                       G++++vilN+ ++s   ++++tv+ ++
       KKY14456.1  74 HGKKIAVILNEfGDSadiEKSLTVNKDG 101
                      599********98888788888887544 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 9.4
  Glyco_hydro_30C  31 vvilNrsessvtit 44 
                      v+++N+++  ++++
       KKY14456.1 222 VILINKADIVTEAE 235
                      78888876633333 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00018      0.17      12      47 ..      45      80 ..      35      85 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00018
  Zeta_toxin 12 sqerPklillgGqpGAGKselaellkdelerqgnvv 47
                ++++  + ++ G  GAGK++l++++  e + ++ +v
  KKY14456.1 45 DGSKVPITIVTGYLGAGKTTLLNYILSEQHGKKIAV 80
                44444567899**************99974333333 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00025      0.24      14      42 ..      52      80 ..      45     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00025
                EEEEESTTSSHHHHHHHHTTSS--SEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkpteGei 42
                + ++G  GaGK+tLl+ ++ + + ++  +
  KKY14456.1 52 TIVTGYLGAGKTTLLNYILSEQHGKKIAV 80
                6678999***********99988665555 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0032         3       8      57 ..      53     106 ..      46     111 .. 0.76
   2 ?    2.2   0.1     0.095        90     147     172 ..     224     249 ..     213     264 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0032
                 EEEEBTTSSCCCCCCTTSSSS----.....--------------S-EEEEEEEEE CS
      Septin   8 mvvGesglGkttlintlfetdliee.....ekleeasekkkktveikkkkvviee 57 
                 +v G  g Gkttl+n +++++  ++     +     s +++k+++++k  +++ee
  KKY14456.1  53 IVTGYLGAGKTTLLNYILSEQHGKKiavilN-EFGDSADIEKSLTVNKDGEQVEE 106
                 689***************9998888666643.33345677777777777777766 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.095
                 EESSGGGS-HHHHHHHHHHHHHHHHH CS
      Septin 147 viaKaDtltkeElkefKkkireelee 172
                 +i KaD++t+ El+ + ++ir+    
  KKY14456.1 224 LINKADIVTEAELDIVISRIRSINGL 249
                 799***********999999876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 2529.14
//
Query:       KKY14458.1  [L=410]
Description: hypothetical protein UCRPC4_g06716 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-20   70.0   2.9    1.5e-19   69.4   2.9    1.3  1  Nbl1_Borealin_N  Nbl1 / Borealin N terminal


Domain annotation for each model (and alignments):
>> Nbl1_Borealin_N  Nbl1 / Borealin N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   2.9   8.4e-24   1.5e-19       1      56 [.      42      97 ..      42      98 .. 0.98

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 8.4e-24
  Nbl1_Borealin_N  1 kkealLenfdlEveeRirrlraelelllktlrnrfelellriPkavRkmtmkelle 56
                     +k+al++n++lE++eR+r lra+++l++++lr+r+e++++riP+++Rk tm+ell+
       KKY14458.1 42 QKQALIDNLQLEITERARSLRAHYALQATDLRSRIERRINRIPMSLRKATMGELLD 97
                     89****************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1913  (0.106699); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.07u 0.37s 00:00:01.44 Elapsed: 00:00:00.52
# Mc/sec: 2356.23
//
Query:       KKY14572.1  [L=327]
Description: putative phytanoyldioxygenase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-20   71.9   0.0    1.2e-19   71.4   0.0    1.2  1  PhyH      Phytanoyl-CoA dioxygenase (PhyH)
  ------ inclusion threshold ------
      0.032   13.0   0.0      0.046   12.5   0.0    1.2  1  DUF1479   Protein of unknown function (DUF1479)


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.0   1.3e-23   1.2e-19       4     207 ..      53     254 ..      50     258 .. 0.73

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 1.3e-23
                 HSEEEETTSS-HHHHHHHHHHHHHHHHHCHTTCCSEEEEECEEESTTCCCEECCCHHCHHHHTTH........HHHHHHHHHHHTSCEEEE......EE CS
        PhyH   4 dGylviegflsaeevealraeiealldralesgdkidfffeekaaadedglleksinkvghflhp........rkvadlvrailgqdvyva......av 88 
                 +G +v++g l  eev+++ ++++          +k  ++ +++++  e++     i+k+++f+++          +++l+ ++l++           +v
  KKY14572.1  53 AGGVVVKGILGTEEVKTIEKDVRPW-------LEKDKPWTDGDFFPPETRRAYGMITKSQTFAERivghplwiGVTDALLTSVLKN----NwvgeknEV 140
                 799*********************7.......333344455555555555555555555555555555546654444444444444....344447744 PP

                 EEEEEEE...EEE-TTTCB-EEEEE-SGGGST......EES...GCCEEEEEEESS-B-TTBT-EEEETTGGGS-CCGTCCHHCSGCCTTSCCCTTTGH CS
        PhyH  89 lqsmyqd...ifkqpkiGgevqpwHqDstflp......tdp...eesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteaeddeakked 175
                   s  q    i++  ++G+ +q +H+D++ ++      +++   +++ +g+ +a  + t++nG++rfiPGSH+w  ++        +++        + 
  KKY14572.1 141 SISKPQLnntIVFSIGPGARSQVLHRDDAIHHrdypaiAEHemgRDAGIGFFVAGKKSTKQNGATRFIPGSHLW--DY-------AEGP--------PR 222
                 4444444558**********************8777764448899*****************************..43.......2222........22 PP

                 GSCEEEE.BTTTEEEEEETTSEEEE-TB.SSS CS
        PhyH 176 eeeavpvevkaGdavlfhgrllHgsgaNrsdk 207
                 e+++  +e+++Gd + f + ++Hg++aN+++ 
  KKY14572.1 223 EDQTFYAELEPGDGFMFLSGCFHGGSANKTEN 254
                 4678899***********************86 PP

>> DUF1479  Protein of unknown function (DUF1479)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.1e-06     0.046      48     116 ..      28      98 ..       8     118 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.1e-06
                 -SS-EEEHHHHHCT---HHHHHHHHHHTEEEEETSS-HHHHHHHHHHHHHHHHHTSS...HHHTTSSS-CEE CS
     DUF1479  48 eliPeidfkdieegavsaefsaeikrrGvlvvrgvvpeeeaeewkeeikeYleknsd...ikglpkekpqiy 116
                 +++Pe++  d e+  + +e +++ik +G +vv+g++  ee+++++++++ +lek +       +p+e  + y
  KKY14572.1  28 SPLPEVKTFDAETV-TVDELVDAIKVAGGVVVKGILGTEEVKTIEKDVRPWLEKDKPwtdGDFFPPETRRAY 98 
                 46677776666666.358999********************************9965300333566655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2206.17
//
Query:       KKY14573.1  [L=298]
Description: putative ferulic acid esterase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.5e-07   28.5   0.0    1.6e-06   27.8   0.0    1.3  1  Esterase_phd  Esterase PHB depolymerase
    0.00099   18.6   0.4      0.045   13.2   0.0    2.8  3  Peptidase_S9  Prolyl oligopeptidase family
      0.004   16.8   0.1     0.0066   16.1   0.1    1.5  1  Esterase      Putative esterase
  ------ inclusion threshold ------
      0.049   12.3   0.0        1.3    7.6   0.0    2.3  2  AXE1          Acetyl xylan esterase (AXE1)


Domain annotation for each model (and alignments):
>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   3.6e-10   1.6e-06       3     140 ..      36     175 ..      35     202 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 3.6e-10
  Esterase_phd   3 yrlylpp.GarrgamplvvmlhGctqsveefaaGtrmnl.ladklGvvvlypeqslranaqkcwnwykdtdraGrGeaavvvalvdalvdehrvdaa 97 
                   + +ylpp        pl++ +hG  ++++++aa +r+n  l +   ++v+   q      ++ w+        G  + a   a+   l +++ +d +
    KKY14573.1  36 FAIYLPPsYDDHTPSPLLLCFHGYGRTMDQLAAVSRFNDpLINPNMIAVFLQGQV-GPSGKRAWQGA-PYAAPGVDDIAFTSAVLTFLREHYCIDDS 130
                   579****53445678**********************973666666677665554.55677777754.4566788888888888888888889**** PP

  Esterase_phd  98 rvyvaGlsaGaaladllalh..ypdvfaavalhsGlalGeaadvi 140
                   r+y  G s G+++ dlla        faa a+ s   +   +++ 
    KKY14573.1 131 RIYALGKSNGGGFCDLLASSstVGSNFAAFAMASAALYHRYTSAS 175
                   *****************976115689*******998887654444 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0     1e-05     0.045      23      75 ..      89     141 ..      73     165 .. 0.81
   2 ?    1.0   0.0     0.054   2.4e+02     125     159 ..     168     203 ..     142     207 .. 0.76
   3 ?    0.8   0.0     0.062   2.8e+02     182     210 ..     265     294 ..     257     296 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1e-05
                   TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHH CS
  Peptidase_S9  23 rGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGG 75 
                     +    +a++ a +   g  +++   a++ +l +++ +d +r+++ G S+GG
    KKY14573.1  89 QVGPSGKRAWQGAPYAAPGVDDIAFTSAVLTFLREHYCIDDSRIYALGKSNGG 141
                   5555556788888888889999998899999999999***************9 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.054
                   HHHHHHHHHH-CGGG--.---EEEEEEETT-SSS-T CS
  Peptidase_S9 125 eegykelspyspldnvk.aypplLlihGlaDdrvpp 159
                    + y  +s++ pld+ +   +p+L +hG +D+ + +
    KKY14573.1 168 YHRYTSASTVVPLDAQEiPLTPILELHGANDETIKY 203
                   567888888888888778889**********99877 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.062
                   TTS-SSTTSSHHHH.HHHHHHHHHHHHHCT CS
  Peptidase_S9 182 pdegHgvgkprakv.eelarllaFlkealg 210
                    + gH   k+++      +++l+F+ ++ +
    KKY14573.1 265 EGMGHLWPKQKRDGvSASKTMLEFFSRYSK 294
                   678995555555555***********9986 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.5e-06    0.0066       6      61 ..      32      83 ..      28     233 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.5e-06
                EEEEEEEEE.CC.GGTTTEEEEEEE--T.THHCCHHHHHCHHCCCCHCCT.EEEEEE CS
    Esterase  6 reikvqvyLPedyspgrkypvvylldGl.tgwdqnfrakelleslaregeiaeviiv 61
                 ++++++yLP++y+++++ p++++++G     dq + ++++ + l+  +     +i 
  KKY14573.1 32 ANREFAIYLPPSYDDHTPSPLLLCFHGYgRTMDQLAAVSRFNDPLINPN-----MIA 83
                57899**********************9555666666666666666554.....333 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.012        53      72      97 ..      38      64 ..      18      93 .. 0.77
   2 ?    7.6   0.0   0.00029       1.3     163     188 ..     119     144 ..     111     180 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.012
                EEEEES..SSSSEEEEEEEE-TT--GG CS
        AXE1 72 klvlPke.keeklPavvefhGYegsrg 97
                 ++ P+   + + P+++ fhGY  +  
  KKY14573.1 38 IYLPPSYdDHTPSPLLLCFHGYGRTMD 64
                55556541456789********98754 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00029
                 HHHHTSTTEEEEEEEEEEETHHHHHH CS
        AXE1 163 eivaslpevDeeRvavlGasqGGala 188
                   ++++  +D++R+ +lG+s GG+  
  KKY14573.1 119 TFLREHYCIDDSRIYALGKSNGGGFC 144
                 556778899**************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1976.53
//
Query:       KKY14574.1  [L=405]
Description: putative integral membrane [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2881.69
//
Query:       KKY14575.1  [L=370]
Description: putative penicillin-binding [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-19   70.1   0.1      3e-19   69.5   0.1    1.2  1  Beta-lactamase  Beta-lactamase
    1.2e-10   41.7   0.0    4.6e-10   39.9   0.0    1.9  2  DUF3471         Domain of unknown function (DUF3471)


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.1   3.3e-23     3e-19     140     321 ..       7     200 ..       2     207 .. 0.86

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 3.3e-23
                     SCEE-SHHHHHHHHHHHHHHHTSHHHHHHHHHTTTTTTSTTEESSTTGGGGGGBEE..EEEEETCEEECSCETTHHHHC.....TTTBEEEEHHH CS
  Beta-lactamase 140 tkwgYsntgygllgellekvtgrsleqllreeilrpLgmkdtelgppesgdprdaa..gytgngpearappanlpaeae.....gagglistard 227
                       + Y n+gy + ++++  +tg  +++l +++i+ pL mk+t + + ++ ++ +      +    +  ++++ l+ + +     g+gg+is+++d
      KKY14575.1   7 AGFHYANIGYLVIQHIIQTITGSWIGDLHERRIWGPLSMKSTFIRLKDALRAVQSKdsILAYGYSWDELEDQILHQPWTdtqlvGGGGIISSVAD 101
                     6799**************************************998876554433320022233355555555555555589************** PP

                     HHHHH.....HHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEECECSSEEEEECCHTEEEEEEE..STEEEEEEEECGGTEEEEEEESBCSSH CS
  Beta-lactamase 228 larfl.....glalegglllsaetlaqltaklssgttrpagiraglglGwvladktgapgtfghtG..ggygtyvfvdpeanlvvavltnrdppn 315
                      a++l     +++   ++l ++ ++ ++ +     +t+p  ++a +  Gw ++ ++g +++++h+G  +g+ + +++ p+ + +v+++ n+d   
      KKY14575.1 102 FAKYLhamihQTLPMSKSLQQELIRPRMLQGDDDFFTFPYSTPAMYATGWAVSSYRG-HSMISHSGaiNGFASRIAYLPDLDWGVVLMGNSDLR- 194
                     **********999********************************************.9*******************************9987. PP

                     HHHHHH CS
  Beta-lactamase 316 edaaed 321
                      ++a d
      KKY14575.1 195 GNHAID 200
                     555555 PP

>> DUF3471  Domain of unknown function (DUF3471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.78     7e+03      47      62 ..     126     141 ..     118     151 .. 0.73
   2 !   39.9   0.0   5.1e-14   4.6e-10       9     101 ..     256     366 ..     249     368 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.78
     DUF3471  47 qgeLehyhgdfFlarw 62 
                 ++++ + ++dfF++  
  KKY14575.1 126 RPRMLQGDDDFFTFPY 141
                 5667789999999654 PP

  == domain 2  score: 39.9 bits;  conditional E-value: 5.1e-14
     DUF3471   9 slpleaYvGtYedpgygtvtvslegdrLflrfdrtprlqge............LehyhgdfFlarwddrs....seadakveFeldedgkvtrltlk.. 89 
                 slpl +Y G Y +p+yg+++++  +  L l ++++  ++              +eh++gdfF+a+++++      +    +eF++d+ g+v ++++   
  KKY14575.1 256 SLPLVEYRGMYHNPAYGDIDLAIADPDLRLPVKNSTSEVLHavlrhtanftldFEHVSGDFFVAWVNTEVpmltASFALPAEFRIDPRGNVVKMGIPtn 354
                 89************************999555444444333455555555577**********9998888*997445778****************955 PP

     DUF3471  90 aefsfdfkdlnf 101
                 + +   +++++f
  KKY14575.1 355 TVLLERDHKIWF 366
                 434444555666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.33s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 2295.06
//
Query:       KKY14576.1  [L=198]
Description: putative major facilitator superfamily [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-15   54.4  15.2    1.2e-14   54.1  15.2    1.1  1  MFS_1     Major Facilitator Superfamily
     0.0008   18.4   6.6      0.001   18.0   6.6    1.2  1  Sugar_tr  Sugar (and other) transporter
     0.0031   16.5   0.3     0.0036   16.3   0.3    1.1  1  MFS_5     Sugar-tranasporters, 12 TM
  ------ inclusion threshold ------
       0.16   11.8   0.2        4.7    7.0   0.0    2.5  3  YniB      YniB-like protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1  15.2   2.6e-18   1.2e-14      35     145 ..       2     110 ..       1     125 [. 0.82

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 2.6e-18
       MFS_1  35 gllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfsl 132
                 +l lt+y++++++a  ++G l+d  Grr+ +ll+l++++++++ l++ ++++ +llvlr+lq++g++a ++++  ++ d+++  erg + g++++g+  
  KKY14576.1   2 NLTLTTYMIFQGLAPSLMGDLADTAGRRPAYLLCLIIYIAACIGLAL-QNSYaALLVLRCLQSAGSSATLALASGIVGDISTAAERGTYQGIATIGV-- 97 
                 577999***********************************555556.88888***************************************99855.. PP

       MFS_1 133 Gailgpllgglla 145
                 G  +  l+g l+a
  KKY14576.1  98 GGTFSLLVGILVA 110
                 5555544433333 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   6.6   2.3e-07     0.001      65     155 ..      18     111 ..       2     134 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.3e-07
                 HHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHH......HHHHHHHHHHHHHHHHH CS
    Sugar_tr  65 fagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRga......lvslyqlaitfGilvaa 155
                 ++g l+d+ GR++++l + ++++++ +  a+ +   s+ +l+v R l   g  ++ +l++  ++ i++++ Rg+      +++   +++ +Gilva+
  KKY14576.1  18 LMGDLADTAGRRPAYLLCLIIYIAACIGLALQN---SYAALLVLRCLQSAGSSATLALASGIVGDISTAAERGTyqgiatIGVGGTFSLLVGILVAF 111
                 57789********************99999999...*************************************822211134444556667777776 PP

>> MFS_5  Sugar-tranasporters, 12 TM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.3   8.1e-07    0.0036      87     135 ..      17      66 ..       6     108 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.1e-07
       MFS_5  87 tivgsladkfgrkracltyailyilacitkhsge.ykvlmigrvlggiat 135
                 +++g lad  gr+ a l+  i yi aci     + y  l++ r l    +
  KKY14576.1  17 SLMGDLADTAGRRPAYLLCLIIYIAACIGLALQNsYAALLVLRCLQSAGS 66 
                 689*************************9776543888999998865443 PP

>> YniB  YniB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.001       4.7      74      97 ..      32      55 ..      23      62 .. 0.83
   2 ?    2.2   0.0     0.031   1.4e+02      79     121 ..     114     161 ..     103     171 .. 0.71
   3 ?   -2.6   0.0      0.92   4.1e+03     101     114 ..     179     192 ..     169     197 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.001
        YniB 74 niaFlliylliFvGlalqasgarl 97
                 +  l+iy+   +Glalq s a l
  KKY14576.1 32 YLLCLIIYIAACIGLALQNSYAAL 55
                56779*************997765 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.031
        YniB  79 liylliFvGlalqa.sgarlsrqvkeireeiedqlil....ekakGee 121
                 ++++l F G+ l     ar++ + ++ + +++++l +    e+++Ge+
  KKY14576.1 114 VLWILYFKGMMLRQkRFARMTEKERTKDADLDNDLNIqhhdENIRGEN 161
                 67899999**99651579999999887777777665412225666665 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.92
        YniB 101 vkeireeiedqlil 114
                 ++e+++ei+d++ +
  KKY14576.1 179 LREVEKEIQDDIEA 192
                 68889999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1393.20
//
Query:       KKY14577.1  [L=590]
Description: putative small oligopeptide opt family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-104  351.3  34.1    8.8e-83  279.0  25.0    2.1  2  OPT       OPT oligopeptide transporter protein
  ------ inclusion threshold ------
      0.021   14.6   1.7      0.021   14.6   1.7    2.4  2  DUF2427   Domain of unknown function (DUF2427)
      0.064   13.5   0.1       0.47   10.8   0.0    2.5  1  Htr2      Htr2 transmembrane domain


Domain annotation for each model (and alignments):
>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   1.8   8.1e-26   4.8e-22       2      80 ..      92     179 ..      91     185 .. 0.96
   2 !  279.0  25.0   1.5e-86   8.8e-83     248     616 .]     184     548 ..     176     548 .. 0.92

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 8.1e-26
         OPT   2 lTlRavvlGillgvlgsavnmyfglrtglvsissipaallafplgkalarilpk.........lslnpgpftikEnvliqtmasaaat 80 
                 +T+Ra++lG++++++ s +nm++++r++ +s  si+++ll +p+g ++ar++p          +++n gpftikE+++i++ma+++ +
  KKY14577.1  92 NTVRAWILGLIFVTVASGLNMFLSMRSPAISFPSIVVQLLVYPIGCLWARVVPTkkfrtfgleWTFNTGPFTIKEHTIITLMANVSIG 179
                 7************************************************************************************865 PP

  == domain 2  score: 279.0 bits;  conditional E-value: 1.5e-86
         OPT 248 iPllyysngwypaylpydvteildedgvldyekyigyglmllaalvallylvqfaaitllivhtilkhgkdikaalksarsprteeddrhrrlmrkykd 346
                 +P+   s  +++ + +y+vt+il  +++++ eky++y++++la ++ l+y+++faa+t++ivh+ l+hgk+i+ ++++a   + +e+d+h + m+ky +
  KKY14577.1 184 LPI-NTSTTYDNTQSSYNVTKILGDNFTFNVEKYKSYSPIFLAPTFLLNYGLSFAALTASIVHVSLFHGKEIWYRFRAA---KNQEPDVHMKMMKKYSE 278
                 566.667777777777***************************************************************...99*************** PP

         OPT 347 vpmwwylallvlslvigiivvealftqlp..vwglllalllafllaivsaiiaGltglnpvsgigkltqlifgallpgrpvanlvfgavvyaaaaqagd 443
                  p+wwy +l+vls+++g+ +v  +  qlp  +w+++++ +++f+++i++++i+++t++  + ++++l+ +++g+++pg+p+  ++f+ ++++++ qa++
  KKY14577.1 279 APDWWYGVLFVLSFALGLGTVLGYNSQLPcaWWAYVISNIVGFVFIIPTCMILAITNI--GLALNVLSPFLAGYMIPGKPIGVMIFKVYSTIVLGQAQT 375
                 *************************7776669**************************..*************************************** PP

         OPT 444 fmqDLKtGhllkasPraqfvaqliGtlvgavvniavlkllvkaygdictadasnaftaPqakvfaavavllvggk...kglpwafllgavapfilllll 539
                 +  DLK++h++k++P+++f+aq++ t+++a+v+iav+++ + +++ +c+ + s ++ +   + ++             +++++++llg+ +p++++ + 
  KKY14577.1 376 YCADLKLAHYMKVPPKITFWAQVVPTIWAAIVQIAVMNWTLGNIDGVCE-SSSIVWGVIGPHRMFGP-------DslySSINYYWLLGGLLPVLFYFIA 466
                 ***********************************************99.55555555554444444.......25555789***************** PP

         OPT 540 kk.fpkkstarkl.plplafavgfylppsl.....sialligglianlwlkrrdaewakkynyvlaaGLiaGealmgviiaflv 616
                 +   p+ s++ +l + p++++  ++lpp++     s+  +i+gli+n +++r+++ w+++ynyv aa++++G+ l++++i+f++
  KKY14577.1 467 RYsPPSISRFTRLlNAPIMLGAMGWLPPATplnfsSW--AIVGLIFNHYIRRKWHGWWATYNYVSAAAMDSGLILSTIVIFFAI 548
                 **999999999999****************8875555..777****************************************85 PP

>> DUF2427  Domain of unknown function (DUF2427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2       1.2   7.1e+03      27      34 ..     127     134 ..      95     139 .. 0.55
   2 ?   14.6   1.7   3.5e-06     0.021      16      55 ..     308     347 ..     298     368 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.2
     DUF2427  27 lalvvvyP 34 
                 ++ ++vyP
  KKY14577.1 127 VVQLLVYP 134
                 23334444 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 3.5e-06
     DUF2427  16 salwvHiilmtlalvvvyPvalvLslaksrwylpvqivnl 55 
                  a w+++i  ++ +v++ P++++L++++  ++l v+  +l
  KKY14577.1 308 CAWWAYVISNIVGFVFIIPTCMILAITNIGLALNVLSPFL 347
                 578************************9999998887655 PP

>> Htr2  Htr2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.8e-05      0.47      17      50 ..      73     106 ..      60     112 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.8e-05
        Htr2  17 aaYlevtaalasGDaaavgeaavsaiLGLivLtv 50 
                   Y ev aa+ + D   v +   + iLGLi +tv
  KKY14577.1  73 SPYDEVRAAVRNTDGEEVANTVRAWILGLIFVTV 106
                 469***************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 3581.91
//
Query:       KKY14578.1  [L=350]
Description: putative gpi anchored dioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-08   34.7   0.0    1.8e-08   34.0   0.0    1.3  1  Dioxygenase_C  Dioxygenase


Domain annotation for each model (and alignments):
>> Dioxygenase_C  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0     1e-12   1.8e-08       2     100 ..     121     223 ..     120     236 .. 0.74

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1e-12
                    --S--EET--EEESEEE---S--TT--EEEEEEEEE-T.TSSB-TT-EEEEE---TTS--TTS-TT.....S-SSTTTTE...EEEE--TTSEEEE CS
  Dioxygenase_C   2 egPlyveeapededlarledkgeeegerlvlsGrvlde.aGkplagalvelWhanaeGrYshkkee.....heapelnlr...griltdeeGryri 88 
                    +gP+yv+ +++ ++++r    ++++g+++v+ G+ +d    +p+a+   ++W+ n++G Ys    +     +++++ln +   g   +d+eG  ++
     KKY14578.1 121 TGPYYVK-GEHIRSNLR----ESQPGVPVVIDGQFVDVeTCEPIADLWWDVWNCNSTGVYSGLVATgngntNDESNLNATflrGVQKSDSEGVVQF 211
                    5899998.555544444....4569************6258*******************9765441111033444443354477779******** PP

                    EEE----EE--T CS
  Dioxygenase_C  89 rtikPapYpipn 100
                    +t+ P+ Y  ++
     KKY14578.1 212 ETMFPGHYSGRT 223
                    ********9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 2306.03
//
Query:       KKY14579.1  [L=601]
Description: putative long-chain-fatty-acidligase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-65  219.4   0.4    4.1e-33  114.6   0.0    2.1  2  AMP-binding      AMP-binding enzyme
    9.7e-17   61.7   0.1      8e-16   58.8   0.0    2.5  2  AMP-binding_C    AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
       0.14   12.5   0.0       0.51   10.7   0.0    2.0  2  AMP-binding_C_2  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   0.0   6.9e-37   4.1e-33       1     192 [.      40     258 ..      40     272 .. 0.76
   2 !  103.5   0.1   1.7e-33     1e-29     289     422 ..     275     417 ..     259     418 .. 0.90

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 6.9e-37
                  HHHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHH.HTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESE CS
  AMP-binding   1 leeqaaktpdkvalvdsgegqtlTYreldervnrlAagLr.slGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakv 97 
                  ++e ++++p+ +a+   g++++lTY+ ld+++n+lA  Lr  lG++ gdrVai l n + ++v+++a++k+Ga+ vp np++t+++    l++  a +
   KKY14579.1  40 FAEIVKQFPQNIAVKA-GSDEQLTYEALDQQSNSLALSLRnDLGINAGDRVAISLGNNIPYLVTIYACVKIGAISVPFNPAYTSDQTIAGLNHITAAC 136
                  567899********77.99*********************99******************************************************** PP

                  EE....................E.TCTCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS....................-TSCC CS
  AMP-binding  98 li....................a.tvdsel.leklleaaakleavklvivldadellkeeelkeeeeseekae....................kpeee 153
                  ++                    + t    +    ++++++ ++  k+v+v++  +++++ +l+ ++                               +
   KKY14579.1 137 FVtsshitlpykepqttvpllqRlT----NaSTTANSQMP-VPCLKHVVVVK--DASTTLHLERSS------IspvyihdydsivcanrgrplP--LQ 219
                  **99999998887765544332111....11112222232.23333333333..333332333222......0223355678899999999852..34 PP

                  CS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHH CS
  AMP-binding 154 eelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslk 192
                  + l+p+d++++++TSGTT  PK+V l h n+++n++ ++
   KKY14579.1 220 DHLSPEDVINLQFTSGTTSAPKAVCLNHVNILNNAYFCA 258
                  469*******************************98864 PP

  == domain 2  score: 103.5 bits;  conditional E-value: 1.7e-33
                  EEESS-EBHHHHHHHHHHHTC.EEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE..-TTTSCBEETTSEEEEEEEETTS-SEBTT-HH CS
  AMP-binding 289 llggeplspellrffralfge.evlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkiv..DeetgepvpdgeeGellvrgpgvmkgYlkkpe 383
                  ++gg+p+ p+l  ++++++    ++++YG+TE ++++t+ ++e+  +k  + G+p++++ +kiv  D++  + +  ge Ge+lv+g  +mkgY+ ++ 
   KKY14579.1 275 MIGGSPIAPALRLELNKKMHLsGLVNVYGMTELSPAATMTTEEDTLTKMETSGRPIAHQSIKIVarDDA-SRTLLSGERGEILVSGM-IMKGYWEDQY 370
                  46****************98888**************888888889999***************98777.777779**********7.********** PP

                  HHHHHEEE.......T.CCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 384 ataeafds.......e.grwlrTGDlgrldedGyleivgRkkdlikl 422
                  +t++af         +   w+rTGD g +d+ Gyl+i+gR+kd+i++
   KKY14579.1 371 KTSQAFHVdydgesdQpIVWMRTGDEGMIDQSGYLKITGRIKDIIIR 417
                  ******8568898874345**************************86 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.3   1.4e+04      56      68 ..     172     184 ..     136     189 .. 0.71
   2 !   58.8   0.0   1.3e-19     8e-16       1      76 []     426     534 ..     426     534 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.3
                    TTTS-SEEEE-S- CS
  AMP-binding_C  56 pyavpkkvvfvde 68 
                    p+ + k+vv+v++
     KKY14579.1 172 PVPCLKHVVVVKD 184
                    3458888888865 PP

  == domain 2  score: 58.8 bits;  conditional E-value: 1.3e-19
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE--...............----....................HHHHHHHHHHHHT-TTTS-S CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkd...............gsea....................leeeLkahvrkelgpyavpk 61 
                    e+E++l++hp++a+a VvG+pd++ Ge+++a+Vvl+d                  +                    ++e  +++vr++l  + vpk
     KKY14579.1 426 EIENILMQHPDIANASVVGIPDDKYGEVIAACVVLRDatkaschgdsyardlR--SisqgqrnehnqidlsiseliTPESCRSWVRARLSRHLVPK 519
                    8**********************************875666666655555440..05555555667788899999********************* PP

                    EEEE-S---B-TTS- CS
  AMP-binding_C  62 kvvfvdelpktrsGK 76 
                    ++vfv  lp+ ++GK
     KKY14579.1 520 HIVFVTHLPLGATGK 534
                    ************999 PP

>> AMP-binding_C_2  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         1   6.2e+03      37      72 ..      52      85 ..      42      92 .. 0.72
   2 ?   10.7   0.0   8.5e-05      0.51       1      28 [.     419     446 ..     419     495 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1
                     EEEEEE-TT----HHHHHHHHHHHHHHHHHHHSS-- CS
  AMP-binding_C_2 37 evkvEvkegfsdelkelealekkiakklksklgvsv 72
                     +vk   +e++  ++++l++ ++++a +l++ lg+++
       KKY14579.1 52 AVKAGSDEQL--TYEALDQQSNSLALSLRNDLGINA 85
                     4444445554..356788888889999999999876 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 8.5e-05
                      TEEE-HHHHHHHHHT-TTEEEEEEEEEE CS
  AMP-binding_C_2   1 GvnvfPsqieevlkeieevepeYqivvt 28 
                      G n++P +ie++l++ +++++   + + 
       KKY14579.1 419 GENIYPVEIENILMQHPDIANASVVGIP 446
                      78***************99887666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 3925.58
//
Query:       KKY14580.1  [L=537]
Description: putative integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.042   14.0   0.0      0.079   13.1   0.0    1.4  1  NAD_binding_6  Ferric reductase NAD binding domain
       0.12   12.3   0.3       0.26   11.2   0.3    1.5  1  TRI9           TRI9 protein


Domain annotation for each model (and alignments):
>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   8.8e-06     0.079       1      29 [.     422     460 ..     422     476 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.8e-06
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxx..........x RF
  NAD_binding_6   1 yenvllvagGiGitpfisilkdllkksk..........k 29 
                    +++v+lva G+Gi p++ +l d l ++k          +
     KKY14580.1 422 FRSVVLVATGSGIGPCLAVLNDKLPQTKfrviwstpnpE 460
                    679*******************99998866666555553 PP

>> TRI9  TRI9 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   2.9e-05      0.26      22      38 ..     198     216 ..     194     218 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.9e-05
        TRI9  22 vFaYsGv..saaLCatiWv 38 
                 v+ Y G+  saa+Cat+W 
  KKY14580.1 198 VYEYGGMhsSAAICATVWF 216
                 8889996669********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.52
# Mc/sec: 3107.48
//
Query:       KKY14581.1  [L=434]
Description: putative ncs1 nucleoside transporter family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-65  221.8  18.1    1.7e-65  221.6  18.1    1.1  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami
  ------ inclusion threshold ------
       0.68   10.3   4.7        1.3    9.3   4.7    1.5  1  DUF1440         Protein of unknown function (DUF1440)


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.6  18.1   1.9e-69   1.7e-65      96     440 .]       2     374 ..       1     374 [. 0.92

  Alignments for each domain:
  == domain 1  score: 221.6 bits;  conditional E-value: 1.9e-69
  Transp_cyt_pur  96 iaivwfgvqawiGsealllmlgkifgk.wleigg...ailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkae 186
                     +a++w+g+q + G++a++++lg+i+g  ++ + +    +  +++  l++ffif+++ l+i++  ++ ++    +  +++    +g+ iwa+++a+
      KKY14581.1   2 TACIWMGIQLYWGGQAIQIILGSIIGPkFIFLSNtlpESAHVTTVSLISFFIFVILFLPILMIRPEHLQTPLRVSFVMICGTVVGMMIWAVSQAG 96 
                     89************************9988888877788899999************************988888888877779*********** PP

  Transp_cyt_pur 187 g.Gpvldkavklgkse...lflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaa.yganawspldila 276
                     g G+++ ++     +e     + ++ ++++g+ + il  +D+try ++++ss+ +ql + pl+ tl++l g+l+++a++++ +g+  w+p  +l 
      KKY14581.1  97 GaGTLVGQGPTGKGAElrwNTVYGLQSIVGGYGSGILGQSDWTRYSSRPRSSLFGQLFTCPLTITLTALCGLLITSATSTLyDGEYLWNPFLLLL 191
                     *999999887777777776677788899*****************************************************89999*****5555 PP

  Transp_cyt_pur 277 kfdet..........agvllililvalaqlgvnisanllsagldlaallPkkinikrgsliaavialvivpwkllssssklftaflsllavflsp 361
                      + +           ag +++ + ++++ql++ i +n +s+g+dlaal+ ++ini+rg++i+ +ia++i+pw+   ++s  f++ ls  +vflsp
      KKY14581.1 192 YIQQRpgfsssasarAGTFFAGFGLLFSQLALCIVLNGMSCGMDLAALCSRYINIRRGTYICTIIAVAICPWQYVTQASV-FITVLSGWSVFLSP 285
                     555559******************************************************************77777666.************** PP

  Transp_cyt_pur 362 vagviiadyfvvrrgylklaalytrr.rgsaYwyrkgvNwravaayivGiaaglvgvagsvg.........ikvvkgaeklfdlsylvG 440
                     ++g+++ dyfvvr  +l++ +ly    + +aYwy+ g+Nwra++a+  G+ + l+g+  +++           +  g e+l+dlsy+ G
      KKY14581.1 286 MTGILLSDYFVVRACRLRVSDLYLGVdPAGAYWYTLGFNWRAFIAWTTGLWPLLPGFVRQIKrsttpdqwtNVPHNGWERLYDLSYFFG 374
                     ***********************97679****************************998888888888875555668899999999876 PP

>> DUF1440  Protein of unknown function (DUF1440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.7   0.00015       1.3      45     132 ..       4      89 ..       1      94 [. 0.86

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00015
     DUF1440  45 ytysgqkvnwvsvlvhilfsivfavlYvvvaevfpkiklwqGalfGllvtiavHlivlPllglvpalkelpleehvsEilghivwlws 132
                  ++ g ++ w ++ + i+++ +++  ++++++ +p+    + ++++l+  +++ +++lP+l ++p+  + pl+  +  i g++v ++ 
  KKY14581.1   4 CIWMGIQLYWGGQAIQIILGSIIGPKFIFLSNTLPE--SAHVTTVSLISFFIFVILFLPILMIRPEHLQTPLRVSFVMICGTVVGMMI 89 
                 5788999****************************6..555667788888889999****************9999999888876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2791.16
//
Query:       KKY14582.1  [L=487]
Description: putative isopullulanase precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-25   88.2   0.2      1e-24   87.3   0.2    1.5  1  Glyco_hydro_49N  Glycosyl hydrolase family 49 N-terminal Ig-l
    3.9e-19   68.8   0.7    3.9e-19   68.8   0.7    2.1  2  Glyco_hydro_49   Glycosyl hydrolase family 49
    5.4e-18   65.0   0.9    1.6e-17   63.5   0.9    1.9  1  B_solenoid_dext  Beta solenoid repeat from Dextranase
    8.1e-18   64.2   2.4    8.1e-18   64.2   2.4    2.7  3  IPU_b_solenoid   Isopullulanase beta-solenoid repeat
  ------ inclusion threshold ------
       0.23   10.2   1.7        1.6    7.4   0.2    2.1  2  VGCC_alpha2      Neuronal voltage-dependent calcium channel a


Domain annotation for each model (and alignments):
>> Glyco_hydro_49N  Glycosyl hydrolase family 49 N-terminal Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3   0.2   2.8e-28     1e-24      86     187 ..       1     108 [.       1     109 [. 0.91

  Alignments for each domain:
  == domain 1  score: 87.3 bits;  conditional E-value: 2.8e-28
                      EEEEEEEESS-EEEEEEECTTTS---GGGEEEESCCC--EEEE-CTTEEEEEE---TT-EEEEEEEGGGEEEECCTSSS........EESSTCE CS
  Glyco_hydro_49N  86 maWssfeyskdvtvkvslrdGssissaddvvirPsslnfevrlvdadtvrikvPysaaGyrfsvefeddlytllndGde........evasGdr 171
                      maW++f+ys+dvt+k+s   G  +++    +irP+sl ++v  +d + ++i vPys++G rfsvef d+ly + ++ ++        + a  d 
       KKY14582.1   1 MAWTQFLYSRDVTIKISRSYGFKVTA-AMTTIRPTSLHYKVWDSD-GNLYIAVPYSDQGTRFSVEFSDNLYDFHTSCTDpsnctfvkTFAEDDI 92 
                      8***********************99.6789**********9965.679************************999666678899866677779 PP

                      EEEEEESEEEEEEEEE CS
  Glyco_hydro_49N 172 aihtePrnallifaeP 187
                      ++++eP n+l+ifa+P
       KKY14582.1  93 VVGKEPINSLMIFASP 108
                      ***************9 PP

>> Glyco_hydro_49  Glycosyl hydrolase family 49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.34   1.2e+03      34      62 ..     327     352 ..     293     359 .. 0.58
   2 !   68.8   0.7   1.1e-22   3.9e-19       3     110 ..     369     476 ..     365     482 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.34
                     -SEEEEEEEEEEEEECEET-CGCSTT-EE CS
  Glyco_hydro_49  34 alqnlenisiknvnieafegLeigtqesh 62 
                     a  nl n+++  vn+       +++++sh
      KKY14582.1 327 ASRNLSNVTVNSVNVI---HSRWNSNVSH 352
                     4456666666666654...2336666665 PP

  == domain 2  score: 68.8 bits;  conditional E-value: 1.1e-22
                     T-BBEEEEEEEEEEEEEEEEECCE-ECEEE--SEEEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT..B..EEEEEEEEEEETTEE-..-TT CS
  Glyco_hydro_49   3 sttadsnktvknltlenvaveGltnalvRiyalqnlenisiknvnieafegLeigtqeshlkrysdlanekvidstglklenytvGgqki..tae 95 
                     + ta   +t++++t++n+++eG++  l+Ri +l+n+ n++i n+ i  + g   g  es l+ ++d+ ++  + ++g+ ++n+ vG++++    +
      KKY14582.1 369 TNTASLSNTISDVTFSNIRAEGISGNLFRIVPLSNIRNLTIENIYIHQYSGT-TGVPESQLPMWYDS-DGNSVSVKGFLVKNFQVGEEQVgfGKG 461
                     46777789*****************************************995.6999**********.667899****************98899 PP

                     T-STTTTT-EEE-GG CS
  Glyco_hydro_49  96 nfsaaslGrldvDge 110
                     n++  + G l++  e
      KKY14582.1 462 NWEIGQAGNLNIAHE 476
                     **********99765 PP

>> B_solenoid_dext  Beta solenoid repeat from Dextranase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.9   4.6e-21   1.6e-17       1      33 []     246     278 ..     246     278 .. 0.99

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 4.6e-21
  B_solenoid_dext   1 PFNsMDfyGdsdnisvevaDYKQVGaFfgQTDG 33 
                      PFNs+Df Gd+d+is++++DYKQVGa+fgQTDG
       KKY14582.1 246 PFNSLDFDGDLDTISIHASDYKQVGAYFGQTDG 278
                      9*******************************9 PP

>> IPU_b_solenoid  Isopullulanase beta-solenoid repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       1.6   5.8e+03      19      28 ..     304     313 ..     303     313 .. 0.81
   2 !   64.2   2.4   2.3e-21   8.1e-18       1      32 [.     314     345 ..     314     346 .. 0.98
   3 ?   -0.8   0.3      0.46   1.7e+03      17      31 ..     403     416 ..     402     417 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.6
  IPU_b_solenoid  19 tNitVdhVdv 28 
                     +N+ V +V v
      KKY14582.1 304 SNVDVQRVTV 313
                     7999999976 PP

  == domain 2  score: 64.2 bits;  conditional E-value: 2.3e-21
  IPU_b_solenoid   1 WKtntAPivqfGWysRnltNitVdhVdvIHsr 32 
                     WK++tAPi+qfGW+sRnl+N+tV++V+vIHsr
      KKY14582.1 314 WKGTTAPIIQFGWASRNLSNVTVNSVNVIHSR 345
                     *******************************8 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.46
  IPU_b_solenoid  17 nltNitVdhVdvIHs 31 
                     n++N t++++  IH+
      KKY14582.1 403 NIRNLTIENIY-IHQ 416
                     89999999984.565 PP

>> VGCC_alpha2  Neuronal voltage-dependent calcium channel alpha 2acd
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.2   0.00045       1.6     340     379 ..     198     238 ..     189     251 .. 0.83
   2 ?    1.6   0.1     0.025        91     216     294 ..     253     327 ..     249     333 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00045
  VGCC_alpha2 340 tqy.yfeneeksfsgvldcgncsrlfhaeklentnllfiva 379
                   qy y +n ++ +++++d +nc r+++   +++t+  f ++
   KKY14582.1 198 EQYvYQSNPAHNYTSYFDNENCLRMWRGTSISDTQQTFYLS 238
                  67735568899***********************9888766 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.025
  VGCC_alpha2 216 DGGflvlsnqedyisqigkffgevdpslmralvneslftkkksydyqsvCepkkeskaaaglrsvyvPtiaDilnlaWw 294
                  DG +  +s ++ +++q+g +fg+ d + ++   n+s++ +   y+      ++  s+    + +v++ t a i++++W 
   KKY14582.1 253 DGDLDTISIHASDYKQVGAYFGQTDGITLYP--NSSVHDV--FYHSNDDTIKTYFSNVDVQRVTVWKGTTAPIIQFGWA 327
                  56666788899999***********987765..7777765..3333334444555666667777888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.50
# Mc/sec: 2937.99
//
Query:       KKY14583.1  [L=454]
Description: putative prolidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-57  192.4   0.2    1.1e-56  191.9   0.2    1.3  1  Peptidase_M24  Metallopeptidase family M24
    5.9e-25   87.4   0.0    1.1e-24   86.5   0.0    1.5  1  AMP_N          Aminopeptidase P, N-terminal domain


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.9   0.2   1.2e-60   1.1e-56       2     209 .]     184     442 ..     183     442 .. 0.88

  Alignments for each domain:
  == domain 1  score: 191.9 bits;  conditional E-value: 1.2e-60
                    HHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTTTCEESSSSEEEEGGGGGSTTTBCSSSB--TTEEEEEEEEEEETTEEEEEEEEE. CS
  Peptidase_M24   2 lirkaariasaaleavleaikpgvterelaaeieattlkrhgarglafppivasgenaavlhytpndrvlkegdlvlidagaeydgyasDitrTv. 96 
                    lirka+++++ a++av+e+     terel+a++  t ++ +g++ +a++pivasg+naa+lhy++n+++l +++ +lidag+ey++ya+D+trT+ 
     KKY14583.1 184 LIRKANEVSADAHAAVYEKAPTAKTERELHAIFIST-CICGGCDNQAYDPIVASGTNAATLHYVKNNEKLIDKENLLIDAGGEYRCYAADVTRTFp 278
                    79***************9999999**********88.**********************************************************9 PP

                    ECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHT....TB..............CCGBSSCSEEEESSSSSEEEEEESS.... CS
  Peptidase_M24  97 lvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesa....gl..............akffphglGHgvGlevhdegpsvsr.... 170
                    l Gk ++e +e+y++v e+qe  ++++k+Gv +++++aaa++v+ ++    g+              ++ffphglGH +G+++hd g + ++    
     KKY14583.1 279 LSGKWSKESKEIYDTVHEMQEVSFEMLKEGVLWEDVHAAAHKVAIKRlkqfGIlvgdeqeifdkrisVAFFPHGLGHYLGMDTHDTGGNANYedkd 374
                    999******************************************96554555889999999***********************97766556677 PP

                    ......STTCSSB--TTBEEEEEEEEEEET........TT.................EEEEEBEEEEEES CS
  Peptidase_M24 171 ......esndgrkleeGmvftiEpgiyfap........ge.................ggvriedtvlvte 209
                          +   + +l +G v+t+Epg+yf          +                  ggvried+v++t+
     KKY14583.1 375 smfkylR--VRGTLPAGCVITVEPGVYFCRfiiepylkDAesskyinkivldkywkvGGVRIEDDVVITK 442
                    7664322..5789**************5544444555511556677777777788879**********96 PP

>> AMP_N  Aminopeptidase P, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.0   1.3e-28   1.1e-24       1     117 [.      17     133 ..      17     143 .. 0.92

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 1.3e-28
                 HHHHHHHHHHHS...-SSEEEEEE-----EEET.TEE------HHHHHHH----SS-EEEEEESSEEEE...EEEE----HHHHHHH----HHHHHHHH CS
       AMP_N   1 yaerRkrlleal...pensvvilaagkekyrsg.dveypFrqnsdFlYltGfnepdavlvlekeedkkehkstLfvprkdpekelWdGarlgleeakel 95 
                 +a+r++++++a      ++v++l+++k+++ ++ d++ pFrq++ F+Yl+G++ pd++l++    ++ ++++tL++p+ dp++ +W+G + ++eea + 
  KKY14583.1  17 HAKRVAEFIAAAgagGRDGVIYLESQKTHMNEDnDQQAPFRQRRPFFYLSGCELPDSYLTY----NIATTELTLYIPPIDPDDVIWSGLPKSPEEALKE 111
                 6788888888887775689******************************************....89999***************************** PP

                 HT-SEEEEGGGHHHHHHHHHTT CS
       AMP_N  96 fgvdeaepidelesalakllkg 117
                 ++vd+++ +++l++ l+k++++
  KKY14583.1 112 YDVDAVFTTANLNACLTKIASS 133
                 ****************999775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.52
# Mc/sec: 2609.70
//
Query:       KKY14584.1  [L=561]
Description: hypothetical protein UCRPC4_g06713 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3883.37
//
Query:       KKY14585.1  [L=527]
Description: putative protein of unknown function DUF2183 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-22   79.0   0.0      5e-22   78.1   0.0    1.5  1  DUF2183   Uncharacterized conserved protein (DUF2183)


Domain annotation for each model (and alignments):
>> DUF2183  Uncharacterized conserved protein (DUF2183)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.0   2.8e-26     5e-22       1      99 []     332     425 ..     332     425 .. 0.91

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 2.8e-26
     DUF2183   1 ffYvSaspwnlyplleeFleenglPkgslllrdls.ltlksllkekstaehKraeiekiletfperkfiliGDsgqkd.peiYaeiakefpeqikaiyI 97 
                 f+Y++++p ++++ +++F+ ++ +P gs+++r l+ ++++      +t + ++  ++ki++tfp+rkfil+GD++++d ++ Y  +a+efp+q+++i++
  KKY14585.1 332 FHYLTTTPEQVTRNYMDFIYKT-YPGGSFDTRPLNfSDAS------ATLSIRKFLLQKIFQTFPKRKFILVGDTTNSDvMKDYPLMATEFPGQVQCIFL 423
                 8********************9.************33333......46689*************************663799***************** PP

     DUF2183  98 Rd 99 
                 R+
  KKY14585.1 424 RN 425
                 *6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 3371.82
//
Query:       KKY14586.1  [L=468]
Description: hypothetical protein UCRPC4_g06715 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00019   20.9   0.6    0.00039   19.8   0.6    1.6  1  CorA      CorA-like Mg2+ transporter protein
  ------ inclusion threshold ------
       0.26   11.2   0.6       0.58   10.1   0.1    1.8  2  Imm6      Immunity protein Imm6


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.6   4.4e-08   0.00039     170     285 ..     251     369 ..     150     379 .. 0.62

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.4e-08
        CorA 170 nrevlkrllakaddkllddedkeylrdlldelerllemlealrerleslqdtyssllser.....................lNrvmkvLTvltaiflPl 247
                 ++++++ + ++++                      l ++++l++rl + ++++++l ++r                      N  m++++ ++ +flP 
  KKY14586.1 251 LQDMMDVIWDYTHV--------------------HLFDADTLAQRLANQMQSIFQLTNQRdsranlaiadfnnelawqahgANSSMRTIAFVSLLFLPG 329
                 22333222333333....................55555666666555555555555555666666666666666666999****************** PP

        CorA 248 TlitGiyGmNfkg.lP.elewsygypfvlllglmallail 285
                 T++++++   + +  P e +    +pf++ + ++ ll+++
  KKY14586.1 330 TFVASFFDTPMFNwVPsEGKVLVAEPFWIYWTVSGLLTLI 369
                 *******665433366633333344555444444444444 PP

>> Imm6  Immunity protein Imm6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.38   3.4e+03      34      46 ..     176     188 ..     154     197 .. 0.75
   2 ?   10.1   0.1   6.5e-05      0.58      21      74 ..     245     296 ..     223     312 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.38
        Imm6  34 ckkwlegenvtad 46 
                 +++w+ +++v++ 
  KKY14586.1 176 TWDWILDREVQGK 188
                 7999999999875 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 6.5e-05
        Imm6  21 ddevevveeaLdvckkwlegenvtadeLydlldnedeedilefaeqeedekven 74 
                 ++e  + ++ +dv++++++ +  +ad L ++l+n + + i ++++q  d++++ 
  KKY14586.1 245 KQECSQLQDMMDVIWDYTHVHLFDADTLAQRLAN-QMQSIFQLTNQ-RDSRANL 296
                 566889999*************************.89999999995.4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.49
# Mc/sec: 2872.01
//
Query:       KKY14587.1  [L=397]
Description: hypothetical protein UCRPC4_g06697 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.4    9.5   8.5        1.8    9.9   3.5    2.7  3  RNR_inhib  Ribonucleotide reductase inhibitor


Domain annotation for each model (and alignments):
>> RNR_inhib  Ribonucleotide reductase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         1   1.8e+04      43      43 ..      54      54 ..      36      80 .. 0.52
   2 ?    1.1   0.0     0.054   9.6e+02      53      96 ..     140     183 ..     110     201 .. 0.70
   3 ?    9.9   3.5   9.8e-05       1.8      23     105 ..     278     369 ..     255     371 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1
   RNR_inhib 43 s 43
                s
  KKY14587.1 54 S 54
                1 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.054
   RNR_inhib  53 rellpfcGinkvgglavqseeeaspateeenaavddadaeslpp 96 
                 +e  +f Gi+   g+ ++  ++++   +e++ ++d++ +   p+
  KKY14587.1 140 SETGAFPGIDAARGMFSSGNQDNPTVLDESEDEDDSQRRAVAPG 183
                 67789999999999999977666666655555554444444444 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 9.8e-05
   RNR_inhib  23 ysafklwsdkstakksksstsssasaasanrellpfcGinkvgglavqseeeaspat.........eeenaavddadaeslppltssqesve 105
                 +++f++ +++++a++++++++ s++a s+++ l  f++ ++v g ++q+ ++ +            ++  +++++a++ + p+++s q+s e
  KKY14587.1 278 EQRFSTKNPNQQAQRQRTTRHPSTRAGSHQTVLSSFSAKQSVCGDGSQTSSTGDVGIeehtrveghNTRLSCSPEANTADEPASQSGQDSEE 369
                 5678899999999999999999999******************9999955554444344556665566667777777777777788888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2587.18
//
Query:       KKY14588.1  [L=205]
Description: hypothetical protein UCRPC4_g06698 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1486.77
//
Query:       KKY14589.1  [L=374]
Description: putative methyltransferase domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-14   51.5   0.0    1.4e-13   51.0   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    1.4e-06   28.1   0.0    6.4e-06   26.0   0.0    1.9  1  Methyltransf_31  Methyltransferase domain
    9.5e-06   26.2   0.0    3.2e-05   24.6   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
    0.00051   20.7   0.0     0.0031   18.2   0.0    2.3  1  Methyltransf_12  Methyltransferase domain
     0.0036   17.9   0.0     0.0098   16.5   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.047   13.2   0.0      0.093   12.3   0.0    1.4  1  MTS              Methyltransferase small domain
       0.17   11.2   0.0       0.28   10.4   0.0    1.6  1  Methyltransf_2   O-methyltransferase domain
       0.25   11.1   0.3        2.4    7.8   0.3    2.1  1  Methyltransf_16  Lysine methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   6.4e-17   1.4e-13      22     164 ..     152     301 ..     116     302 .. 0.81

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 6.4e-17
  Methyltransf_23  22 aggrvLdiGcGtGillevlren..gfsvtgvDlspeaveiaekakkaqkdqfdeqeaae......pqgkfdlIvlrevlehvpdppellrqiat 107
                       g+++Ld+G+G+G l+ +l      + + g D+  ++          +++ f  q +++      ++++fdlI +r++  ++ ++  ++r +++
       KKY14589.1 152 HGAKILDLGTGSGKLSIELGFTfpSCAIQGCDIAVIQECGG------PNVVF--QIWDFrrpdlwSKEQFDLILMRDLSFTISSWQDTMRLAFE 237
                      5679*************995441235888999999888875......44444..22222444555778************************** PP

  Methyltransf_23 108 llkpgGylllseplasl........kedrllldwlylvpagrhisffsarslkelleeaGlevve 164
                      ++kpgGy+++ +++ +         + +++l  +  ++++ r i++ s +++  ++ +aG+ev +
       KKY14589.1 238 HTKPGGYVEIAYVGLPKipdgiempELRKWLTTVNEAATE-RGIHLVSPKDISSIVGKAGFEVTH 301
                      ************9877688887665555555555555655.99*******************986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   2.9e-09   6.4e-06       5     113 ..     154     251 ..     152     296 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 2.9e-09
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeie 98 
                       ++lDlG+G+G+l++el    +p + + G Di   +i+ +          nv F++ d+   + l+++e+fDlil +++  ++++ +++++ ++
       KKY14589.1 154 AKILDLGTGSGKLSIELG-FTFPSCAIQGCDIA--VIQECGG-------PNVVFQIWDFRR-PDLWSKEQFDLILMRDLSFTISSWQDTMRLAF 236
                      689**************9.8899999*****95..5777766.......59**********.535999************************** PP

  Methyltransf_31  99 rvlkpggilliedpr 113
                      +  kpgg++ i+++ 
       KKY14589.1 237 EHTKPGGYVEIAYVG 251
                      *********999887 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.4e-08   3.2e-05       1      97 []     156     243 ..     156     243 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.4e-08
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSS.STTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpf.edgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      +LdlG+G+G+l+++l   ++++ + g+Di+      ++e     g+nv f+  d+++ ++  +++fDl++++  l++ + + ++++++ +++++
       KKY14589.1 156 ILDLGTGSGKLSIELGFTFPSCAIQGCDIA-----VIQECG---GPNVVFQIWDFRRPDLwSKEQFDLILMR-DLSF-TISSWQDTMRLAFEHT 239
                      8***************99999*******85.....445555...799********998754888*******6.5554.4568999********* PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      kpgG
       KKY14589.1 240 KPGG 243
                      ***9 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.4e-06    0.0031       1      98 [.     157     244 ..     157     245 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.4e-06
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G l+ +l   +p + + g+Di   +            n  ++ ++++  d   l ++++fDl+++ ++   +  ++++++ + ++ k
       KKY14589.1 157 LDLGTGSGKLSIELGFTFPSCAIQGCDIAVIQE-------CGGPNVVFQIWDFRRPD---LWSKEQFDLILMRDLSFTISSWQDTMRLAFEHTK 240
                      8***************************75444.......55555556666666555...56667***************************** PP

  Methyltransf_12  95 pgGr 98 
                      pgG+
       KKY14589.1 241 PGGY 244
                      ***7 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.4e-06    0.0098       1      94 [.     157     245 ..     157     247 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.4e-06
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTS.S-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaeklp.fednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      Ld+G+G+G+l+ +l  ++  + + g+D++     + +e++ ++   v f+  d+++     +++fDl++++   +++  ++++++ +    kpg
       KKY14589.1 157 LDLGTGSGKLSIELGFTFpsCAIQGCDIA-----VIQECGGPN---VVFQIWDFRRPDlWSKEQFDLILMRDLSFTISSWQDTMRLAFEHTKPG 242
                      89999999999999966678899999963.....334445444...77899999986447789******************************* PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       KKY14589.1 243 GYV 245
                      *98 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.2e-05     0.093      31      63 ..     152     184 ..     144     187 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.2e-05
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEES CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdv 63 
                 +  k+lDlG+G G l+++l    p+ +++ +d+
  KKY14589.1 152 HGAKILDLGTGSGKLSIELGFTFPSCAIQGCDI 184
                 5789*********************99999997 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00013      0.28      64      99 ..     154     188 ..      87     298 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00013
                     SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHH CS
  Methyltransf_2  64 kslvDvGGGtGalakaivsayPtikvivfDlpeVve 99 
                      +++D+G G+G l  +   ++P++ +   D++ + +
      KKY14589.1 154 AKILDLGTGSGKLSIELGFTFPSCAIQGCDIAVI-Q 188
                     479***************************9855.3 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.3    0.0011       2.4      48     135 ..     154     227 ..     149     236 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0011
  Methyltransf_16  48 lsvlELGsGtGlvGlavaellpeakviltDleellellkknielnknalkskvkvevLdWgeeleedllekeevDlilaaDcvYleds 135
                       ++l+LG G+G   + +  + p++ +   D+  ++e+   n+             +   W+ +  +dl +ke++Dlil+ D+ +  +s
       KKY14589.1 154 AKILDLGTGSGKLSIELGFTFPSCAIQGCDIAVIQECGGPNVVF-----------Q--IWDFRR-PDLWSKEQFDLILMRDLSFTISS 227
                      67888888888888888888888888888888888887777766...........2..376666.88889999999999999887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2938.48
//
Query:       KKY14590.1  [L=423]
Description: putative umta methyltransferase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-18   64.6   0.0    1.8e-17   63.7   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
    2.6e-08   34.5   0.0    1.1e-07   32.5   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
    1.1e-06   29.2   0.0    2.1e-06   28.3   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    0.00024   21.8   0.0     0.0019   18.9   0.0    2.3  1  Methyltransf_12  Methyltransferase domain
    0.00087   19.1   0.0       0.23   11.2   0.0    2.3  2  Methyltransf_31  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   4.9e-21   1.8e-17      20     163 ..     187     339 ..     164     341 .. 0.76

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 4.9e-21
  Methyltransf_23  20 lraggrvLdiGcGtGillevl..rengfsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatllkp 111
                          +  Ld+G+G G+++e++  + + +svtg+D s++ +   ++++  ++d +   + +   + ++++ +r +  +++d+p+ lr ++++lkp
       KKY14590.1 187 VSDVNAALDVGTGPGYWAEEFanSHRNCSVTGIDHSFVESWGTPNFQRVFHDVE---KYKSLGEEYEFVFCRGLGTSIHDWPRFLRWAKSHLKP 277
                      4556688**************766679**********97776544444444444...7777888****************************** PP

  Methyltransf_23 112 gGylllseplasl...........kedrllldwlylvpagrhisffsarslkelleeaGlevv 163
                      gG+++++++  +              +++ +++ + +++ + i ++  rs+ ++le+ G+ ++
       KKY14590.1 278 GGWIEVRDVCLPVilpedaslkfpMLAEWEKYMIAGAHE-QGIDLQAVRSIPTILENHGFVNL 339
                      ********8666677666665442233333334444666.889****************9876 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0     3e-11   1.1e-07       2      97 .]     194     279 ..     193     279 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 3e-11
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkp 95 
                      Ld+G+G+G +++++a+   +++vtg+D s  ++e   +      +n++ v +d+e+++   +++ +v+++g     s +d++++l+ ++++Lkp
       KKY14590.1 194 LDVGTGPGYWAEEFANSHRNCSVTGIDHS--FVE---SWG---TPNFQRVFHDVEKYKSLGEEYEFVFCRGL-GT-SIHDWPRFLRWAKSHLKP 277
                      9****************879*******88..444...444...36899999******************755.43.4569************** PP

                      EE CS
  Methyltransf_25  96 gG 97 
                      gG
       KKY14590.1 278 GG 279
                      *9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   5.8e-10   2.1e-06       1      94 [.     194     281 ..     194     283 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 5.8e-10
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgG 92 
                      LdvG+G G+ ae++a+    ++v+g+D  + +++ + + + ++      v  d+ek +   + + +v+++   + ++d+ ++l+ ++  LkpgG
       KKY14590.1 194 LDVGTGPGYWAEEFANSHrnCSVTGID--HSFVESWGTPNFQR------VFHDVEKYKSLGEEYEFVFCRGLGTSIHDWPRFLRWAKSHLKPGG 279
                      8**************555579******..55665564444443......7799999977778******************************** PP

                      EE CS
  Methyltransf_11  93 ll 94 
                      ++
       KKY14590.1 280 WI 281
                      97 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   5.3e-07    0.0019       1      99 []     194     281 ..     194     281 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 5.3e-07
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G G  +++++++++++++tg+D s  ++        +++  n+++v  +++   +l  g+ +  v++ ++   + d+ ++l+ ++++Lk
       KKY14590.1 194 LDVGTGPGYWAEEFANSHRNCSVTGIDHS--FV-------ESWGTPNFQRVFHDVEKYKSL--GEEYEFVFCRGLGTSIHDWPRFLRWAKSHLK 276
                      8*************************976..66.......446666666666666664433..349**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       KKY14590.1 277 PGGWI 281
                      ***86 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   6.4e-05      0.23       7      37 ..     193     222 ..     188     224 .. 0.89
   2 !    5.6   0.0    0.0036        13      62     119 ..     238     293 ..     228     343 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.4e-05
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDis 37 
                       lD+G+G G+ + e+a +   ++ v+GiD s
       KKY14590.1 193 ALDVGTGPGYWAEEFA-NSHRNCSVTGIDHS 222
                      79**************.7788999*****75 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0036
  Methyltransf_31  62 dieeleklledekfDlilsnevlnaladpdkileeiervlkpggilliedprllaelp 119
                      d+e+ ++ l  e + +++++++   + d + +l+ +++ lkpgg + ++d++l   lp
       KKY14590.1 238 DVEKYKS-LG-EEYEFVFCRGLGTSIHDWPRFLRWAKSHLKPGGWIEVRDVCLPVILP 293
                      5555443.33.78************************************999332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2721.60
//
Query:       KKY14591.1  [L=588]
Description: putative phthalate transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-22   78.4  16.1    6.3e-22   78.0  16.1    1.1  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0  16.1   3.5e-26   6.3e-22       2     352 ..     125     511 ..     124     512 .. 0.80

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 3.5e-26
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..fasslwlllvlrvlqGlg 98 
                 ++++f   l+r++++ al+  + +dlg+s   ++  +++++  +++a +p  +++ ++G+  ++ + +++++l  ++l   + ++ + ++++r+l Gl 
  KKY14591.1 125 CIMFFALQLDRGNISQALSDNMLDDLGLSTNDYNNGMSIFYCSFLFAEMPSQFIGKKLGPDNWIPTQMVSWSLV-AALQckI-TGRTSFFICRFLLGLL 221
                 689999**************999***************************************************.4444345.55556*********** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.......Wravfyilaivsllafvlfllllpeepperkrkspkeee.. 188
                 +g+++p  + +++  ++ +e +  ++++ +++    i+++ l+  +++  g       Wr++f i ++++   ++l   +++ +p++ ++k++  ++  
  KKY14591.1 222 EGGFIPDLVLYLSYFYKNRELPVRLSFFWTAYVTTNIIAAFLAYGILHMRGsgplqegWRYLFAIEGAITGTIGIL--SWFYLPPSPTQTKRHGWKGll 318
                 ***********************************************77777***********************9..888888888888888888845 PP

       MFS_1 189 .....................kgtgpaplvpawkallkdp..............vlw.......i.llialllfffgfsg.lltllplylqevlglsgl 243
                                                       dp               +w       +  ++ + l++++ ++ ++ +l+l + +  g++  
  KKY14591.1 319 rpksgwftereeiimvtrvlrD----------------DPgkatmhnrqalsfgKIWeslsdfdLwPIYLIGLTWTVPMTpVSNYLTL-TLKSIGFN-T 399
                 5555555555555555555440................44444333333333332233333322104444444444444478888888.7*******.7 PP

       MFS_1 244 llaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt.....ssavllllvlvliGfglgfvfpsllalasdlapp.eeagt 336
                 +++ ll   +++++++  l++++ls +    +++ll++l++ l+al l+++  +       a ++ + l  + +g+  + + l al+s++ ++ + +  
  KKY14591.1 400 FQTNLLTIPSSVLFICQLLFWTWLSEK---INQRLLMGLIAQLWALPLVIALEClpvhfAGAQWVRYTLTSLVVGYPYAHAVLVALTSRNSGTvRSRTV 495
                 888888888888888889*********...55666666666677777777777767755555566657777999*****************87799999 PP

       MFS_1 337 asglfntagslggalg 352
                  s+l+n+a +++ +++
  KKY14591.1 496 GSSLYNMAVQASNIIS 511
                 9*********999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.50
# Mc/sec: 3561.92
//
Query:       KKY14592.1  [L=1350]
Description: putative phytochrome-like histidine kinase phy1p [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-30  104.2   0.0      1e-29  103.1   0.0    1.5  1  PHY           Phytochrome region
    3.4e-18   66.2   0.1    7.1e-18   65.2   0.1    1.6  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    6.9e-14   52.0   0.0    2.9e-13   50.0   0.0    2.1  2  Response_reg  Response regulator receiver domain
    9.2e-13   48.0   1.0    4.6e-12   45.8   1.0    2.3  1  HisKA         His Kinase A (phospho-acceptor) domain
    6.2e-10   39.8   0.0    2.1e-09   38.1   0.0    2.0  1  GAF           GAF domain
      7e-10   39.5   0.0    2.7e-09   37.7   0.0    2.1  1  PAS_2         PAS fold
    0.00033   20.5   0.1    0.00079   19.3   0.1    1.6  1  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik
  ------ inclusion threshold ------
       0.15   12.0   0.0       0.38   10.7   0.0    1.7  1  HATPase_c_5   GHKL domain


Domain annotation for each model (and alignments):
>> PHY  Phytochrome region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.0   4.7e-33     1e-29       6     170 ..     521     688 ..     516     696 .. 0.93

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 4.7e-33
                 HHHHHHHHHSSSHHHHHTTTCCHHHHHTT-SEEEEEETTEEEEEESS-.-HHHHHHHHHHHHHTTTTSEEEESBCCCTSGGGG..CCCCCHSEEEEEEE CS
         PHY   6 eklvealareedleeglvdespnlldlvkadGaalllegklltlGetP.seeairkllqwlereseeevfstdsLseayPeaa..aladvasGllaisl 101
                 +kl++ + ++++    +v+++++ll+l +ad  al +++++  lG+   +++++ ++l++l  ++ + vf+t+++se++P+++     + ++Gll ++l
  KKY14592.1 521 RKLINTIPTSANPSGYIVASTEDLLKLFEADIGALSIRDETKILGKPAsHTQEVLAMLEFLRLKRLSSVFATQDISEDLPDLRypPGFSFIAGLLYVPL 619
                 6899999999***********************************965156789**************************8862256789********* PP

                 SSTTTEEEEEEE-CEEEEEEEESSSGGCCCCCCTCCCCSHHCHHHCCCCCETTEBS---HHHHHHHHHH CS
         PHY 102 sskeseyllWfRpevvqtvkWgGdpekaaeaddagsrlsPRkSFeawketvrgrslpWeeveleaarel 170
                 ss+  +++++fR+ + ++v+W+G+p ++  ++ ++  l+PRkSF++w+et+ g+s+ W+e+e+e+a  l
  KKY14592.1 620 SSNGDDFIVFFRQGQLREVRWAGNPYEKFVKEGTEGYLEPRKSFKQWSETILGKSREWKEQEIETAAVL 688
                 *******************************99********************************9866 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.1   3.1e-21   7.1e-18       1     108 [.     823     951 ..     823     955 .. 0.86

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 3.1e-21
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEE.......TEEEEEEEESSSSSTTHHHT........GTCS...TTCH....HCSTCHTSTSSSHH CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikase.......ddlvisveDnGiGipkedlk........klfe...kfsq....ddstkrggggtGlG 77 
                 gd++++rq++snl++Na+++ t+ag+i++e   se        d++i + D+G G+++++++         +f+   +f++    ++st  g    GlG
  KKY14592.1 823 GDQRKVRQVLSNLISNAIQN-TSAGSISIEAWMSEvqpddkrFDVEICINDTGDGMSQSKVDslfreleqVSFDendPFMTdtksQRSTVEGNRTLGLG 920
                 799****************8.9999999988873344455789*******************999999987886688999998866666666788899* PP

                 HHHHHHHHHHTTTEEEEEEETTTEEEEEEEE CS
   HATPase_c  78 lsivkklvelmgGeiwvesepgrGttftftl 108
                 l++v +  + m+G++++++e+g+Gt+f + l
  KKY14592.1 921 LAVVARALRVMNGQLRLKTEEGKGTRFLIVL 951
                 ******9999****************98876 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.8   8.5e+03       6      28 ..     824     846 ..     822     869 .. 0.59
   2 !   50.0   0.0   1.3e-16   2.9e-13       1     109 [.    1161    1285 ..    1161    1288 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.8
                   SSHHHHHHHHHHHHHTTEEEEEE CS
  Response_reg   6 Ddplvrellrqlleeegyeevae 28 
                   D+++vr++l++l+ ++ +++ a 
    KKY14592.1 824 DQRKVRQVLSNLISNAIQNTSAG 846
                   88899999999998555533333 PP

  == domain 2  score: 50.0 bits;  conditional E-value: 1.3e-16
                    EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH..ESEEEEESSCSSSEHHHHHHHHHHCT...TT............SEEEEEE CS
  Response_reg    1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek..vdlillDinmpgmdGlellkeireed...pe............lpviilt 78  
                    vl+++Ddp++ +++++ le+ g  +v+ + +g+e+ +   e+   +d++l+D++mp +dG+  +k+ir  +   p             +p+ +++
    KKY14592.1 1161 VLVAEDDPINSKIIKKRLERLGH-QVHLTVNGEECAAAHGENPdnYDVVLMDLQMPIVDGYSSTKMIRSYEkihPGashsrrakingrIPIFAVS 1254
                    89*********************.**************9666556**********************998877622455677888888******* PP

                    SSTSHHHHHHHHHCTESEEEESSG-HHHHHH CS
  Response_reg   79 ahseeedavealkagaddflsKpfdpeeLlk 109 
                    a   e +++++ ++g d+   Kp+d +++ +
    KKY14592.1 1255 ASLVERELERYKEIGFDGWFLKPIDFSRVNE 1285
                    ************************9988766 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   1.0   2.1e-15   4.6e-12       4      67 .]     714     776 ..     712     776 .. 0.94

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 2.1e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   4 rflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrieag 67 
                  +la+ aHE rtPL+ai+ ++e+  + g+l++e +++l++ +s ++ l  +++dlLdl++ e+g
  KKY14592.1 714 LLLANSAHEVRTPLNAIINYLEIALE-GSLDQETRDNLARSHSASKSLIYVINDLLDLTKTEEG 776
                 589********************877.49*******************************9986 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   9.3e-13   2.1e-09       5     122 ..     345     501 ..     341     510 .. 0.71

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 9.3e-13
                 HHHHHHHHHHHHHTESEEEEEE....................EEETTEEE...CEEEEECCEEEET.TSH...........HHHHHHHHSSSEEESTGG CS
         GAF   5 lldtvveelrellgadrvalyl....................pdydGlhy...dipqasrwlfmkn.grg...........icgqvlatgqplvipdst 68 
                  l+ ++  ++el+g +rv++y+                    + y Gl++   dip ++r l+  n +r            +c +      pl+ +   
  KKY14592.1 345 FLRVLIGVVKELTGFHRVMIYQfdtawngrvvaelvdpratkDLYKGLNFpasDIPKQARDLYKLNkVRLlydrdqetarlVCKTLEDLETPLNMS--- 440
                 677788899************9998777777777777766665566666699*9*******66666433311111222233555555555677777... PP

                 TSTTHHTT...HHHHHHHHTTESEEEEEEEEETTEEEEEEEEEE.SSS.....CS.HHHHHHHH CS
         GAF  69 pdprfaqy...nrrdllenmgirsslvvPlvndgelwGllvlhn.psp.....pf.treelell 122
                    +++++    + ++l++m +rss+++++ + g+lwGl+++h          +f  r  ++l+
  KKY14592.1 441 --YCYLRAmspIHIKYLAHMAVRSSMSISINAFGQLWGLIACHTyG-SkgmrvSFpIRTMCRLV 501
                 ..5777777777788****************************952.33556666677777776 PP

>> PAS_2  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   1.2e-12   2.7e-09       1     105 [.     143     264 ..     143     266 .. 0.76

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.2e-12
                 HHC--CCC-SEE-TTSEEEEEETT..TTEEEEEETTHHHHCSS-CCCC..........TTTCCCCCSECTTHHHHCCHS-CC.CHCCCCCEEEE.EEEC CS
       PAS_2   1 aylekIqrggliQPfGcllavdek..slrvlqvSeNaaemLglteekl..........lgtdlralltassaalLekalsar.eisllnpilih.srts 85 
                 ++ e+I+++g+iQ+fG+l+a++e+  +l v  vSeN +++ g t+e+l           g+++++ll++  +   e+a   + +  ++  + i+  r++
  KKY14592.1 143 CEDEPIHLPGAIQSFGLLIALKEEvgKLVVRIVSENSHKIIGYTPEQLfsldnfldifTGEQANNLLDHLDFIRDEDATDPAvNGPEVFMLSIRsLRRR 241
                 899******************99977888999************9999888888888888888888888777666666554314455566666645557 PP

                 CCEEEEEEEE...CTTEEEEEEE CS
       PAS_2  86 gkpfyailhr...ideglvidlE 105
                  +++ + +h      +++v+++E
  KKY14592.1 242 TQKLWCAMHIlpdNRDLIVCEFE 264
                 77777777765556667777777 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   3.5e-07   0.00079       4      62 ..     829     895 ..     826     934 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.5e-07
  HATPase_c_3   4 ekAlaelvdNsld.Adaenvkievnknrgkt......geivieDdGkGmseeelknalr.latsske 62 
                  +++l  l+ N+++  +a +++ie+   + ++       ei+i D G+Gms++++++ +r l + s +
   KKY14592.1 829 RQVLSNLISNAIQnTSAGSISIEAWMSEVQPddkrfdVEICINDTGDGMSQSKVDSLFReLEQVSFD 895
                  678999******97889999999884442223444559******************88635554444 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00017      0.38       7      92 ..     829     942 ..     824     949 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00017
  HATPase_c_5   7 cvilgnlLdNAieacskiee..ekrfIrltvrekkksliisieNsyeg..........................ekkklesskskkeehGiGlksire 76 
                    +l+nl+ NAi+  s+ +   e  + +++   k  ++ i i+ + +g                          + k+ +s+ + ++  G+Gl  + +
   KKY14592.1 829 RQVLSNLISNAIQNTSAGSIsiEAWMSEVQPDDKRFDVEICINDTGDGmsqskvdslfreleqvsfdendpfmtDTKSQRSTVEGNRTLGLGLAVVAR 926
                  5799*********99995531122333333333333466666666666777888888888999999877777654477779999************** PP

  HATPase_c_5  77 ivkkykgnlsieaedg 92 
                   ++  +g+l++++e+g
   KKY14592.1 927 ALRVMNGQLRLKTEEG 942
                  **********999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.46
# Mc/sec: 8818.91
//
Query:       KKY14593.1  [L=964]
Description: hypothetical protein UCRPC4_g06694 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (964 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2163  (0.120643); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.46u 0.34s 00:00:01.80 Elapsed: 00:00:00.68
# Mc/sec: 4266.77
//
Query:       KKY14594.1  [L=947]
Description: putative dna repair protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-39  134.5   0.0    6.1e-39  133.0   0.0    1.8  1  Rad4            Rad4 transglutaminase-like domain
    2.1e-27   95.4   0.1    3.7e-27   94.5   0.1    1.5  1  BHD_3           Rad4 beta-hairpin domain 3
    4.2e-19   68.1   0.0    8.8e-19   67.1   0.0    1.6  1  BHD_1           Rad4 beta-hairpin domain 1
    2.2e-17   63.8   0.7    2.2e-17   63.8   0.7    2.8  2  BHD_2           Rad4 beta-hairpin domain 2
    0.00043   20.7   0.0     0.0022   18.4   0.0    2.2  1  Transglut_core  Transglutaminase-like superfamily


Domain annotation for each model (and alignments):
>> Rad4  Rad4 transglutaminase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.0   0.0   1.7e-42   6.1e-39      22     146 ..     342     464 ..     325     465 .. 0.94

  Alignments for each domain:
  == domain 1  score: 133.0 bits;  conditional E-value: 1.7e-42
                 ..--TTHHHHHTTS-SEEEEEEETTTTEEEEEESSSS-EE.SS--TTS--TGGGS----EEEEE-TTS-EEE-HHHH-T.TCCCCHGGGSGGGSHHHHH CS
        Rad4  22 kkkkkrlkdkdlpypvyWvEvfspekkkwisvdplvgsti.ekkeileplaekakqvlsYVvAfdsdgsakDVTrRYlsdysnsktkklrvekskeekk 119
                 ++  +++k  d+pyp++WvEvf++ ++kwi++dp+v+ ti + k+ +ep a++ ++ +sYV+Af++dg+akDVT RY+++ +n+kt+k rve++k +++
  KKY14594.1 342 PTPPRNKKIVDSPYPIFWVEVFNETTQKWIPLDPIVRHTInKPKTGFEPPASDRLNNMSYVIAFEEDGTAKDVTLRYTRH-YNAKTRKTRVESTKGGNQ 439
                 55556677789*****************************888899*********************************9.****************** PP

                 HHHHHHHHH--S---H..HHHHHHHHH CS
        Rad4 120 WfesvlrplekrnkertevdalEdael 146
                 W+++v+++++k+ +e+  +d++Edael
  KKY14594.1 440 WWDKVMSHFAKAISEA--RDEVEDAEL 464
                 ****************..********9 PP

>> BHD_3  Rad4 beta-hairpin domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.5   0.1     1e-30   3.7e-27       1      75 [.     597     669 ..     597     670 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.5 bits;  conditional E-value: 1e-30
                 ----TTS-EE-SSGGGS-TTEEEEE-TTHHHHHHHCT---EEEEEEEEE-SS-EE..EEEEEEEEEGGGHHHHHH CS
       BHD_3   1 vPkNeygnieifkpsmlPegavhislkgaakaakklgidyapAvvGFefkgrrgkgiPvidGivVaeedeeavle 75 
                 vPkN+ygni++++ sm+P g++hi++++  +aak+lgidya+Av+GFefkgr+g+  ++++Giv a+++eea+ e
  KKY14594.1 597 VPKNAYGNIDVYVRSMIPPGGIHIQHPESVRAAKTLGIDYADAVTGFEFKGRQGR--ALVKGIVTAAQYEEAITE 669
                 8*************************************************99999..***************986 PP

>> BHD_1  Rad4 beta-hairpin domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   2.4e-22   8.8e-19       2      51 .]     471     526 ..     470     526 .. 0.89

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 2.4e-22
       BHD_1   2 epmPenlqdfKnhplYvLerhLkrnEvlhpdakpvgvf........kkkepVYrRsdV 51 
                 e+mP+n+qdfK+hp Y+LerhL+rnE++ p + +vg++        k  e++YrRsdV
  KKY14594.1 471 EEMPRNVQDFKGHPHYALERHLRRNEAIWPLK-EVGKVspgmgrdaK-LESIYRRSDV 526
                 99******************************.*****555554432.9********9 PP

>> BHD_2  Rad4 beta-hairpin domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   2.4         5   1.8e+04      33      33 ..      67      67 ..       8      86 .. 0.59
   2 !   63.8   0.7   6.1e-21   2.2e-17       1      64 []     530     590 ..     530     590 .. 0.90

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 5
       BHD_2 33 k 33
                 
  KKY14594.1 67 I 67
                0 PP

  == domain 2  score: 63.8 bits;  conditional E-value: 6.1e-21
       BHD_2   1 rSaerWyrlGReVkpgelPvKrvksraktarkkredekkeeeeeeeegevpLYgewQTelYvpP 64 
                 rS ++Wyr GR+Vk+ge+P+Krv  ++k+a   ++    +ee+e+ ++++ LY+e+QTe Y+pP
  KKY14594.1 530 RSTDQWYRKGRDVKVGEQPLKRVIPKRKKATEVVDF---NEEDEDLQEGTRLYAEFQTEIYIPP 590
                 8**********************9999888777654...377888899***************9 PP

>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.1e-07    0.0022      37     112 .]     232     375 ..     218     375 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.1e-07
  Transglut_core  37 tpgsrdaeavletgkGncedfaslfvallRalGipaRvvtgylsgeeekeq............................................ 87 
                        ++d +++ +t+ G     a+lf+allR++ ++aR+v  ++  +  ++                                             
      KKY14594.1 232 LFDKDDFRQAARTQTGSRDIGAQLFCALLRSVAVEARLVCSLQILPFSGVAkgmtpqkpgptyihandlyrpkpnenvarsreqtpdfhnprrrl 326
                     55667899999*****************************9999887777777888888889888889999888888888888888888888888 PP

  Transglut_core  88 .......................svasedaHawvevyl.egygWvplDp 112
                                            +v+s +   wvev+  + ++W+plDp
      KKY14594.1 327 gypalpspipparntptpprnkkIVDSPYPIFWVEVFNeTTQKWIPLDP 375
                     88888888888888877777777777777799***99977788***998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (947 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.55
# Mc/sec: 5188.95
//
Query:       KKY14595.1  [L=547]
Description: putative vesicle-mediated transport protein bfr2 che [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-27   95.0   1.8    6.3e-27   95.0   1.8    2.2  2  AATF-Che1        Apoptosis antagonizing transcription factor
    2.9e-22   79.0   0.0      1e-21   77.2   0.0    2.0  2  TRAUB            Apoptosis-antagonizing transcription factor,
  ------ inclusion threshold ------
      0.059   13.5   1.5       0.15   12.2   1.5    1.6  1  Arabino_trans_N  Arabinosyltransferase concanavalin like doma


Domain annotation for each model (and alignments):
>> AATF-Che1  Apoptosis antagonizing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.5      0.41   2.4e+03     101     125 ..     152     176 ..      83     186 .. 0.67
   2 !   95.0   1.8     1e-30   6.3e-27       1     139 []     255     381 ..     255     381 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.41
   AATF-Che1 101 rkkkkkeetsleelwkeleklekal 125
                 ++   + e++ +e+++e e+le+++
  KKY14595.1 152 QDAGISGEEENSEYESESEDLEEDM 176
                 2222233333333444444444333 PP

  == domain 2  score: 95.0 bits;  conditional E-value: 1e-30
   AATF-Che1   1 DaeKGkaVknQlklwDslLelRIklQkaltaanqLpqpetlkeflesseefeealeeaekalkklleslleLreelleqne.ikklaeskeeeekkksk 98 
                 Da+KG aVk+Q++++++l +lRIklQk +t++n+Lp+ +     +e +ee+ +++++ae+a+ +l+++l +Lr+++l+ +e +k+      + +   +k
  KKY14595.1 255 DAQKGLAVKEQNQTFEKLVDLRIKLQKSVTTSNSLPSGQ-----IE-DEEVLSTVHKAEEAALQLWSTLESLRHDFLDAQEpLKA------TPN--PKK 339
                 89**********************************877.....34.789999***********************999997763......222..234 PP

   AATF-Che1  99 rkrkkk.kkeetsleelwkeleklekalkpfrnatldkWseK 139
                 rkr +   + +t l++lw ++++le++  p+r+ +l+kWs+K
  KKY14595.1 340 RKRPTApTTPSTPLSTLWARTQTLESHSLPHRRLILNKWSTK 381
                 4443333777899***************************98 PP

>> TRAUB  Apoptosis-antagonizing transcription factor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.3   1.4e+04      29      43 ..     259     274 ..     233     277 .. 0.41
   2 !   77.2   0.0   1.7e-25     1e-21       1      85 []     433     518 ..     433     518 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.3
       TRAUB  29 lqklrkkkkk.kkkvD 43 
                   +++++++  +k vD
  KKY14595.1 259 GLAVKEQNQTfEKLVD 274
                 2223333333455566 PP

  == domain 2  score: 77.2 bits;  conditional E-value: 1.7e-25
       TRAUB   1 YqqLLkelvekksaessaaasdsrqllalqklrkkkkkkkkvDtkaSKGRklrYevheklqNFmapee..rgkweeeqidelfasLl 85 
                 Yq+LL  l++++s+++ + +++  +  ++  l + k+++ + DtkaSKGRklr+++hekl NFmape+  +++w ++qi+e+f sL+
  KKY14595.1 433 YQSLLLSLISSRSTSAFNPTAN-LSASTILPLSRPKNHRPNLDTKASKGRKLRFTPHEKLMNFMAPETigNTRWGDRQIEEFFGSLF 518
                 9************888765444.444455556666666689*************************99666***************9 PP

>> Arabino_trans_N  Arabinosyltransferase concanavalin like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.5   2.5e-05      0.15      35     125 ..     229     336 ..     218     346 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.5e-05
                      EGGGGGGB-.TT--EEEESS-TTSTTHHHHSEEEEEETTE............EEEEETTEEEE.EEEHHH....HHT-TT-EEEEEEESS-EEE CS
  Arabino_trans_N  35 pcaavaelp.aeggvvlsTvPkeakdaakrGLfvrvtads............vevvvrnvvll.sapree....laspecaeltvtsdsegtta 110
                      + aa+++l  ++ +vv sT+ ++a+  a++GL v+ ++++             +v+  n+    +++ ee    ++++e+a+l+++s+ e+ + 
       KKY14595.1 229 DRAALRALMsSDTKVVASTISAAAAADAQKGLAVKEQNQTfeklvdlriklqKSVTTSNSLPSgQIEDEEvlstVHKAEEAALQLWSTLESLRH 322
                      55666666526778**********************9999999999665544344444444331222222111144467777888888888888 PP

                      EETT-T..TT-EEES CS
  Arabino_trans_N 111 efvglteekasgtle 125
                      +f +++e + ++t +
       KKY14595.1 323 DFLDAQE-PLKATPN 336
                      8887764.4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.57
# Mc/sec: 2895.47
//
Query:       KKY14596.1  [L=1738]
Description: hypothetical protein UCRPC4_g06683 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.43   11.1   0.0       0.43   11.1   0.0    3.0  3  ABA_WDS   ABA/WDS induced protein


Domain annotation for each model (and alignments):
>> ABA_WDS  ABA/WDS induced protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   1.5    0.0046        82       9      74 ..     475     511 ..     468     539 .. 0.59
   2 ?   11.1   0.0   2.4e-05      0.43      19      71 ..     610     665 ..     602     672 .. 0.83
   3 ?   -5.9   2.5         1   1.8e+04      23      23 ..    1022    1022 ..    1011    1036 .. 0.52

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0046
     ABA_WDS   9 hkhkerlgelgavaaGAfalyEkheakkdpeharrHkieeeiaaavAvGsgGyafhEhhekkeakk 74 
                 h++                              + H+i++  a+a+A G+   a    h+ k   k
  KKY14596.1 475 HRR-----------------------------RKDHRIRDAAAGALAGGALTAAALKSHDSKSGDK 511
                 332.............................2345555555555555555544444444444333 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 2.4e-05
     ABA_WDS  19 gavaaGAfalyEkheakkd...peharrHkieeeiaaavAvGsgGyafhEhhekke 71 
                 g v+ G  +l+ + e ++d   pe++r+H++ee   a vA G gG + h+  + +e
  KKY14596.1 610 GNVSKGDLSLHTRTESEVDiqsPEDSRNHRLEESTLAGVAGGLGGVVGHDILDDEE 665
                 77888888899888888877779***********************9998666555 PP

  == domain 3  score: -5.9 bits;  conditional E-value: 1
     ABA_WDS   23 a 23  
                  a
  KKY14596.1 1022 A 1022
                  2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1738 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.56
# Mc/sec: 9287.84
//
Query:       KKY14597.1  [L=633]
Description: putative atp-dependent rna helicase has1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-46  157.2   0.0    6.2e-46  156.4   0.0    1.4  1  DEAD        DEAD/DEAH box helicase
    5.5e-23   81.4   0.0    3.5e-22   78.9   0.0    2.3  2  Helicase_C  Helicase conserved C-terminal domain
    5.7e-15   55.3   0.4    2.1e-14   53.5   0.1    2.0  2  DUF4217     Domain of unknown function (DUF4217)


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.4   0.0     1e-49   6.2e-46       1     176 []     160     332 ..     160     332 .. 0.95

  Alignments for each domain:
  == domain 1  score: 156.4 bits;  conditional E-value: 1e-49
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS..TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet..kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng 97 
                 t+iQ++ ip +l g+dvl+aa+TGsGKTlaflip+++ +++   k ++g+ +++v+PtreLa q++  +++++ + + ++  +igg + r +++kl +g
  KKY14597.1 160 TEIQQRGIPPLLAGRDVLGAAKTGSGKTLAFLIPAVEMLSSLrfKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANIRAEVEKLTKG 258
                 79*************************************88899999***************************988777799**************** PP

                 CSEEEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHHH CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkkl 176
                 v+++++tpgrl+d+l +t+ + +++++ lV+DEadr+l+ gf+d++++i++ lp      k++rq++++SAT +++v++l
  KKY14597.1 259 VNLLIATPGRLLDHLqKTEGFVFKNCKALVIDEADRILEVGFEDEMRQIVKILP------KEERQTMLFSATQTTKVEDL 332
                 *************9977899*********************************5......57789*********999875 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.49   2.9e+03       4      31 ..     305     331 ..     302     357 .. 0.71
   2 !   78.9   0.0   5.8e-26   3.5e-22       6     110 ..     374     477 ..     369     478 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.49
                 HHHHHHHHHTTTTSEEEEEESSHH.HHHH CS
  Helicase_C   4 eallellkleeeggkilifvntid.rlek 31 
                 ++++++l   +e++++++f+ t++ ++e+
  KKY14597.1 305 RQIVKIL--PKEERQTMLFSATQTtKVED 331
                 5666676..67889999999888866653 PP

  == domain 2  score: 78.9 bits;  conditional E-value: 5.8e-26
                 HHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHH CS
  Helicase_C   6 llellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqr 103
                 l  +l +++ ++ki++f  +++ ++  ++ll +  ++ v+ lhg+ +q++r  ++ +f + ++  Li+tdva+rG+dip v+ +++fd+p+++++yi+r
  KKY14597.1 374 LFSFL-KRNLKKKIIVFFSSCNCVKYhAELL-NYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHR 470
                 55566.78899***********886645555.5559**********************999999*********************************** PP

                 HTTSSST CS
  Helicase_C 104 iGRtgRa 110
                 +GRt+R+
  KKY14597.1 471 VGRTARG 477
                 ******7 PP

>> DUF4217  Domain of unknown function (DUF4217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.37   2.2e+03       1      16 [.     519     534 ..     519     536 .. 0.89
   2 !   53.5   0.1   3.5e-18   2.1e-14      17      61 .]     552     596 ..     548     596 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.37
     DUF4217   1 iqqkleslcakdrdlk 16 
                 +q++le+l+ ++++l+
  KKY14597.1 519 VQSQLEKLIGQNYYLN 534
                 699**********997 PP

  == domain 2  score: 53.5 bits;  conditional E-value: 3.5e-18
     DUF4217  17 elAqkAfvsyvraYsvhlakeiFrvkkLdlealAksfGLleaPki 61 
                 ++A+++++sy++aY++h+++++F+v+kLdl ++AksfG++ +P++
  KKY14597.1 552 QSAKEGYRSYLQAYASHSLRSVFDVHKLDLVKVAKSFGFATPPRV 596
                 78*****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1396  (0.0778627); expected 358.6 (0.02)
Passed bias filter:                      707  (0.0394333); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.52
# Mc/sec: 3690.93
//
Query:       KKY14598.1  [L=777]
Description: hypothetical protein UCRPC4_g06685 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.2e-169  562.8  25.4   5.3e-169  562.4  25.4    1.1  1  TRP       Transient receptor potential (TRP) ion channel
    1.4e-46  158.3   0.8    2.4e-46  157.6   0.8    1.3  1  TRP_N     ML-like domain
  ------ inclusion threshold ------
       0.12   12.1   0.1       0.22   11.3   0.1    1.4  1  SpoIIIAH  SpoIIIAH-like protein
        3.2    7.8   6.3       0.73    9.9   0.4    2.5  2  DUF5392   Family of unknown function (DUF5392)


Domain annotation for each model (and alignments):
>> TRP  Transient receptor potential (TRP) ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  562.4  25.4  1.2e-172  5.3e-169       1     426 []     170     617 ..     170     617 .. 0.97

  Alignments for each domain:
  == domain 1  score: 562.4 bits;  conditional E-value: 1.2e-172
         TRP   1 vkwvtaviaglallasnasavastlgnsnaaahvaasvlslflyfQsvafigmlsvnyPpvlaawtqnfaWsmglirvsfmqkiinwyvqstgGtatlv 99 
                 v+wvtaviag++l+a   sav+s+lg+sn+aahvaa++lslf++fQ++afigm++v++Pp++++wtq+f+Wsmg+irv+f+q+i++wy+++tgGt++++
  KKY14598.1 170 VGWVTAVIAGMGLAA---SAVTSGLGHSNTAAHVAANALSLFGFFQAQAFIGMTAVDMPPIVQSWTQDFQWSMGIIRVGFLQDICTWYQRATGGTPATL 265
                 89*************...********************************************************************************* PP

         TRP 100 lsssstssvsv.kral......................krges.kslpesssklv.rGikrvaekagiestnafmtgllffliliallvvlvllfKlll 173
                 lss st+sv v kr+l                      kr++s +++++s+s++v rGi+rv+++a+iestn+f+tg++ffl+++a++++lv++fK ++
  KKY14598.1 266 LSSLSTTSVDVqKRSLemmkrssehikrwviktggyliKRSNSdSTSSSSDSVVVvRGIERVGFRASIESTNIFLTGMIFFLVFCAVVAILVVMFKGIC 364
                 ***********5477777777789999999*******9886664566777777755******************************************* PP

         TRP 174 ellarkklikedrlkefrknwlgilkgallrlilifffqllvlclfeftqrdsaavvvlAvillalflgvllffafrvlitarkskrlhknpaylLysd 272
                 el+a+k+l+k d++++fr+ w+ +lkg+l+rlili+f+q++vlcl+e+t rds+a+v+lAv++++++++ l++++f+v+++ar+s+++hknpay+Lysd
  KKY14598.1 365 ELCAKKGLMKGDKFSDFRNGWKIVLKGILFRLILIGFPQMCVLCLWELTVRDSSAEVILAVVVFLAMFAALGWASFKVIRLARRSVAMHKNPAYMLYSD 463
                 *************************************************************************************************** PP

         TRP 273 kkvlnkyGflyeqyrasrywffvpllvylfvkalfialaqgsGkvQvialliiEllylvlliwlrPyedkrtnvlniiisvvkvlnvilllaFseefgl 371
                 +++lnk+Gfly+qyra++y+f++p+l y+++ka+fia++qg  +vQ++al+iiE ++lv++++lrP++dk+tnv+ni i+++++ln+i+ll+F+ +fg+
  KKY14598.1 464 PTCLNKWGFLYVQYRATAYYFILPTLGYILLKAMFIAFGQGAYVVQAVALVIIEGCMLVAVSVLRPWMDKKTNVFNISIAAINFLNAIFLLVFTSVFGQ 562
                 *************************************************************************************************** PP

         TRP 372 seivktvvGvvlivinavlalvlliliivnaiiallsknpdrryrpakddresfl 426
                 + iv++v+Gvv++v+nav+alvll+l+++ + +a++s+npd+ry+p++ddr sf+
  KKY14598.1 563 PGIVTGVMGVVFFVYNAVFALVLLLLVLIASGYAIFSRNPDTRYQPMRDDRGSFI 617
                 ***************************************************9985 PP

>> TRP_N  ML-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.6   0.8   5.2e-50   2.4e-46       2     139 .]      30     165 ..      29     165 .. 0.99

  Alignments for each domain:
  == domain 1  score: 157.6 bits;  conditional E-value: 5.2e-50
       TRP_N   2 vtssfenClensqftaskfdvtftpdnktvvfnvtgtssienkavtlelkveaygyevvnetvdpCdanvkglCPlgpgfkinasgvlkvseevvseip 100
                 +++s+++C+ens+ftas fdv+ftpdn+t+ f++ g+ssi+++ vt+ l+v aygy++++et+dpC+++++glCP+++g +in++++++vs++v+++ip
  KKY14598.1  30 ESKSLTSCQENSNFTASLFDVVFTPDNNTLAFEIVGVSSIQGN-VTAVLEVIAYGYTALKETLDPCEMDLSGLCPMSTG-QINIESNIEVSDSVIENIP 126
                 789****************************************.***********************************.******************* PP

       TRP_N 101 siaYsipdldatvrvriystgeateiaCvsatitngktv 139
                 +iaY++pdld+ vr++i+st++ +++aCv+a+++ngktv
  KKY14598.1 127 GIAYTVPDLDGVVRIYINSTDTGKSVACVEAELSNGKTV 165
                 *******************99*****************7 PP

>> SpoIIIAH  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1     5e-05      0.22       6      74 ..     583     677 ..     579     741 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5e-05
                 XXXXXXXXXXXXXXXXXXXX............................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    SpoIIIAH   6 itaLalmiavagYlnftedsgk..........................kaaetaeteqeesekaeigddkekdessaasaeaesssetesessek 74 
                 +++L l+++++gY  f+ + ++                            a++ ++++e++ ++ +gdd+++d+ s+ s+++e    t  +s+++
  KKY14598.1 583 LVLLLLVLIASGYAIFSRNPDTryqpmrddrgsfiksqsnlhtteldaLGATARGDTKETYGNSRLGDDDDDDSFSSHSQNKEAAGVTVPTSTAS 677
                 67899*************9999*****99999999988888887666555556666666666666666444444444444333333322222222 PP

>> DUF5392  Family of unknown function (DUF5392)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.4   0.00016      0.73      33      94 ..     397     459 ..     386     462 .. 0.66
   2 ?   -0.4   0.9      0.25   1.1e+03      19      60 ..     526     565 ..     521     586 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00016
     DUF5392  33 islPLllvslinlillllkaeleedsliaiilyallgAlGlAlfkEsrlkkkeiq.kssikYi 94 
                 i + +  + ++ l  l +  +  e +l  +++ a+ +AlG A fk  rl ++ +  ++  +Y+
  KKY14598.1 397 ILIGFPQMCVLCLWELTVRDSSAEVILAVVVFLAMFAALGWASFKVIRLARRSVAmHKNPAYM 459
                 333333444555556655555555556667788***************999998624455666 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.25
     DUF5392  19 viaPllkKsskysfislPLllvslinlillllkaeleedsli 60 
                 v++P + K+++  ++ + + ++ ++n i+ll+ +++ ++  i
  KKY14598.1 526 VLRPWMDKKTN--VFNISIAAINFLNAIFLLVFTSVFGQPGI 565
                 67888866554..34455677778887777776665544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1119  (0.0624129); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.52
# Mc/sec: 4520.33
//
Query:       KKY14599.1  [L=447]
Description: putative gpi anchored protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-13   51.4   0.7    2.1e-13   50.5   0.7    1.4  1  Alginate_lyase  Alginate lyase


Domain annotation for each model (and alignments):
>> Alginate_lyase  Alginate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.7   1.2e-17   2.1e-13      30     265 ..      43     281 ..      15     286 .. 0.77

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 1.2e-17
                     CCH.S.CCCCTTSSCHCCHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHCTTTCCCCCCCCCCCBTT..GGGGGGHHHHHHHH CS
  Alginate_lyase  30 pdglpyvrrdgqrnpnedaecdlkaleawadavallalayyltgdkrYaekagellraWfldpktrmnpnleyaqaikggrgagiidtevldala 124
                      ++++ v r      ++ ++++ + l ++a+a+ +lal ++ ++d+ +a  a+ +l  W+ +  +  + + +y  +       g+   e+++a++
      KKY14599.1  43 SNAVSVVYRSA----EGSNAANAEDLWHDAAAAFNLALRWKIENDTDCASTAAGILVDWANTLTSLGTSDDQYLTS-------GLQGHELANAAE 126
                     24444444444....4567888889999*******************************************87744.......444446666888 PP

                     HCTTCSSSHHHHHHHHHH.....HHHHHHHHHHHCHHHCCCCTGC...SHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-TTS-BH CS
  Alginate_lyase 125 lleaakalpekerkaiek.....Wfkklldwlqtsrkgkdekaak...nNHgywaalqvaaialvlgdrdlldkalkrykrailndqiapdGslp 211
                     ll +++ + e+   a+ +     +++k   +l +  +   e++ k    N+  ++ ++ +ai++v++++  +d a++ +k++        +G++ 
      KKY14599.1 127 LLLDYSPFVEDGFSAVSDmltniFLAKNIYFLNH--QAPSEHNHKhffANWELANLASAMAIGVVTDNQTAFDYAIDYFKNGT------GNGAIM 213
                     9866666666666666663333366666665555..444444444589********************************999......555566 PP

                     HHHGS................GGGHHHHHHHHHHHHHHHHHHHHCTT--GTC.TCTCCCHHHHHHHHHHH CS
  Alginate_lyase 212 eElaR................gtralhYsnfaLqalvmiaelaerngvdlweysedgktlkkavdfllpy 265
                     + ++                  +r   +   + q l +i + a ++g+dl++  ++++++ + +++ ++y
      KKY14599.1 214 NAITNlveepgtgrllgqgqeAGRDQGHAGLDFQLLGVIGQQAYNQGEDLYG--YADNRILQGAEYYARY 281
                     66666666666688****99999****************************5..5***********9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.51
# Mc/sec: 2650.71
//
Query:       KKY14600.1  [L=259]
Description: putative udptransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-05   25.4   0.0    3.8e-05   23.9   0.0    1.7  2  ATG_C     Autophagy-related protein C terminal domain
  ------ inclusion threshold ------
       0.23   11.2   0.2       0.48   10.2   0.2    1.5  2  VPS13_C   Vacuolar-sorting-associated 13 protein C-terminal


Domain annotation for each model (and alignments):
>> ATG_C  Autophagy-related protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.4   1.3e+04      19      43 ..      24      48 ..      23      60 .. 0.71
   2 !   23.9   0.0   4.2e-09   3.8e-05      10      91 ..     153     233 ..     147     237 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.4
       ATG_C 19 ysslskglksaaqtilavpsevaes 43
                y+ ++++ + ++++ l+++s+++e+
  KKY14600.1 24 YDVVEENHSGTYNKSLDATSRIDEQ 48
                6777777777777777777777776 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 4.2e-09
       ATG_C  10 dlreGlqqAysslskglksaaqtilavpsevaeskgakgavkavvravPvavlrPligateavsktlqGvrnqldpearkes 91 
                 ++ +G+++A ++l  g+    + +++ p++ a ++g+ g++k+++     ++++P  +a+  v   l+G+ ++l++ a k +
  KKY14600.1 153 GIASGFKEAGKELGFGFYDGFTGLVTQPINGAIQQGPLGFAKGLISGSMGVLIKPGAAASGLVGYSLKGLHKELEKRALK-A 233
                 6889**********************************************************************998877.3 PP

>> VPS13_C  Vacuolar-sorting-associated 13 protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         1   9.1e+03     124     150 ..     102     128 ..      97     132 .. 0.73
   2 ?   10.2   0.2   5.3e-05      0.48     112     144 ..     170     203 ..     163     226 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1
     VPS13_C 124 qglvkgpeefgeglakGaksLvkktvf 150
                 +g+++ +++ +e + +G k  v+ tv 
  KKY14600.1 102 EGVTSPQSDTAERVIRGLKVPVNITVA 128
                 677777888888888888877776665 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 5.3e-05
     VPS13_C 112 ssGvkdlfyePiqglvkg.peefgeglakGaksL 144
                   G++ l+ +Pi+g++++ p  f++gl +G+   
  KKY14600.1 170 YDGFTGLVTQPINGAIQQgPLGFAKGLISGSMGV 203
                 579999***********98***********8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 1579.63
//
Query:       KKY14601.1  [L=299]
Description: hypothetical protein UCRPC4_g06688 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.6   0.0        0.2   11.8   0.0    1.3  1  DUF2201   VWA-like domain (DUF2201)


Domain annotation for each model (and alignments):
>> DUF2201  VWA-like domain (DUF2201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.1e-05       0.2      19      66 ..      83     131 ..      71     143 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.1e-05
     DUF2201  19 faaeiadilrrl.eaevhvvavdeevqsvqrlepaeklaelqltggGGT 66 
                 + ae++++lr   +   +vv++d+++++ ++ +p++ ++++++ +  G 
  KKY14601.1  83 YYAEVEQVLRDKlPGIKKVVIFDHTIRRREKSSPRQPVQQVHVDQTPGA 131
                 689******988577789******************9999999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2035.42
//
Query:       KKY14602.1  [L=734]
Description: putative abc iron exporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-39  136.1  13.0    2.4e-39  135.6  13.0    1.2  1  ABC_membrane  ABC transporter transmembrane region
    1.7e-34  119.3   0.0    3.2e-34  118.4   0.0    1.5  1  ABC_tran      ABC transporter
    1.1e-05   25.0   0.0     0.0087   15.5   0.0    2.3  2  SMC_N         RecF/RecN/SMC N terminal domain
    0.00031   21.2   0.0    0.00066   20.1   0.0    1.6  1  AAA_16        AAA ATPase domain
    0.00059   19.7   0.1      0.019   14.8   0.0    2.3  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0043   17.3   0.0      0.022   15.0   0.0    2.1  1  AAA_22        AAA domain
  ------ inclusion threshold ------
      0.014   15.5   0.0       0.15   12.1   0.0    2.4  2  AAA_14        AAA domain
      0.016   15.0   0.0      0.044   13.5   0.0    1.7  2  AAA_15        AAA ATPase domain
      0.021   14.5   0.0       0.05   13.3   0.0    1.6  1  AAA_29        P-loop containing region of AAA domain
      0.023   14.6   0.1      0.062   13.2   0.0    1.6  2  Rad17         Rad17 P-loop domain
      0.027   14.9   0.0       0.16   12.4   0.0    2.2  1  AAA           ATPase family associated with various cellular 
       0.03   14.8   0.0      0.073   13.6   0.0    1.6  1  AAA_23        AAA domain
      0.038   14.5   0.0       0.39   11.3   0.0    2.7  2  AAA_18        AAA domain
      0.039   13.7   0.0      0.087   12.5   0.0    1.6  1  AAA_24        AAA domain
       0.04   13.5   0.0       0.12   11.9   0.0    1.7  2  AAA_25        AAA domain
      0.041   13.9   0.1        3.4    7.7   0.0    2.5  2  GPAT_N        Glycerol-3-phosphate acyltransferase N-terminal
      0.044   13.7   0.0       0.14   12.0   0.0    1.8  2  RsgA_GTPase   RsgA GTPase
       0.07   13.4   0.0       0.22   11.7   0.0    1.9  2  AAA_28        AAA domain
      0.078   13.1   0.0       0.19   11.8   0.0    1.7  1  MMR_HSR1      50S ribosome-binding GTPase
      0.086   12.5   0.0       0.22   11.3   0.0    1.6  1  AAA_30        AAA domain
      0.091   12.0   0.0       0.52    9.6   0.0    2.2  2  Zeta_toxin    Zeta toxin
        0.1   12.2   0.0       0.18   11.4   0.0    1.4  1  ATP-synt_ab   ATP synthase alpha/beta family, nucleotide-bind
       0.13   11.7   0.0       0.27   10.7   0.0    1.4  1  AAA_7         P-loop containing dynein motor region
       0.26   11.0   1.4         12    5.6   0.0    3.0  3  IstB_IS21     IstB-like ATP binding protein


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6  13.0   3.2e-42   2.4e-39       5     274 .]     144     418 ..     140     418 .. 0.95

  Alignments for each domain:
  == domain 1  score: 135.6 bits;  conditional E-value: 3.2e-42
                   HHHHHHHHHHHHHHHHHHHHHHHHHHSS....TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCH CS
  ABC_membrane   5 illailagvlsplfplvlgrildtlldk....gdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsv 97 
                   + l+i a+vl++ +p+++++i+d+++ +    g + ++    +++++    ++ +++  l++ ++  +++++++ + r +f+++l+++m f+ ++++
    KKY14602.1 144 LSLLIGAKVLNVEVPFYFKNIVDSMNIDfaavGGTAWTVAGAMLVAYGTTRIGAAVFQELRNAVFASVAQKAIRNVARNVFEHLLKLDMNFHLNRQT 240
                   6688999******************999776644444678999****************************************************** PP

                   HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH.HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH CS
  ABC_membrane  98 Gellsrltndvsklrdglgeklglffqslltfvgglivmfy.lgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtV 193
                   G l+  + + +  ++ +l++ ++++f   l + ++++++ + +g +++ ++ a+++ +  +++  +++ +k++++ + a ++  +va ++l +++ V
    KKY14602.1 241 GGLTRAVDRGTKGINFLLTSMIFHIFPTALEISMVCGILTWnYGFQFAAITAATMVAYTAFTITTTSWRTKFRRQANAADNQGATVAVDTLINYEAV 337
                   *********************************999988777******************************************************* PP

                   HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 194 kafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfgal 274
                   k+f++e++++ +++kal++++ ++ik++++ ++l++ ++++++ + a ++++++  v sg+l+vgdlv++++l  +l+ +l
    KKY14602.1 338 KYFNNEAFEVARYDKALKKYEDSSIKVTTSLAFLNSGQNIIFSSALAGMMYLAANGVASGALTVGDLVMVNQLVFQLSVPL 418
                   *************************************************************************99998775 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.0   4.3e-37   3.2e-34       1     137 []     482     631 ..     482     631 .. 0.91

  Alignments for each domain:
  == domain 1  score: 118.4 bits;  conditional E-value: 4.3e-37
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHTCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..............esdeei 85 
                 l+n++l++ +g+kvaivG++G+GKSt+l+ll +  +p++G+il+dg+d+++++le lrk igv+pq++ lf+++ ++ n              ++  ++
  KKY14602.1 482 LRNLNLTIPAGQKVAIVGPSGCGKSTILRLLFRFWDPQSGRILIDGQDIRDISLEDLRKAIGVVPQDTPLFNNT-IEHNirygridatedevrHAAMRA 579
                 789**********************************************************************9.99999*****98866555333335 PP

                 HHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +   + ++l+e  +t+v++++  +SgG+kqr+a+ r++lk+p+ll++DE+t+
  KKY14602.1 580 HIHEHIVRLPEGYNTKVGERGMMISGGEKQRLAVSRLILKDPPLLFFDEATS 631
                 5555556666788*************************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1    0.0044       3.3      26      42 ..     494     510 ..     483     520 .. 0.83
   2 !   15.5   0.0   1.2e-05    0.0087     113     206 ..     525     670 ..     517     679 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0044
                 EEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlld 42 
                   aivGp G+GKs +l 
  KKY14602.1 494 KVAIVGPSGCGKSTILR 510
                 469**********9986 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.2e-05
                 ETTEEE-HHHHHHHHHCTT-STT......................................................CS-HHHHHHHHHHHHHHHHCCS CS
                 xxxxxxxxxxxxxxxxxxxxxxx......................................................xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 113 ingkevtkkevsellesagiske......................................................lLSgGektLvalaLlfAiqkvk 157
                 i+g++++   +++l +  g+ ++                                                      ++SgGek+ +a++ l      k
  KKY14602.1 525 IDGQDIRDISLEDLRKAIGVVPQdtplfnntiehnirygridatedevrhaamrahihehivrlpegyntkvgergmMISGGEKQRLAVSRL----ILK 619
                 5555555555555555555555555555555555566666666666666666666666668999999999999999899*****98887755....478 PP

                 --SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx RF
       SMC_N 158 paplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekad 206
                   pl ++De  +aLD    +++ + +++  k+     + +++r +++ ++d
  KKY14602.1 620 DPPLLFFDEATSALDTYTEQALMQNINSILKEkgRTSVFVAHRLRTIFDSD 670
                 99**************99999988887533321133444556665555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   8.8e-07   0.00066      22      63 ..     492     532 ..     480     657 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 8.8e-07
      AAA_16  22 grpelvllsGesGvGKsslvrellralekd.ggiflrgkcdql 63 
                 g  + v ++G+sG+GKs+++r l+r +  + g i++ g+  + 
  KKY14602.1 492 G--QKVAIVGPSGCGKSTILRLLFRFWDPQsGRILIDGQDIRD 532
                 4..4589******************999993344466665555 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.6e-05     0.019       3      51 ..     496     527 ..     495     562 .. 0.75
   2 ?    2.5   0.0      0.14     1e+02     208     273 ..     561     636 ..     538     660 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.6e-05
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldl 51 
                 +++Gp g+GKS++L++l  +++                 +++ + l+d+
  KKY14602.1 496 AIVGPSGCGKSTILRLLFRFWD-----------------PQSGRILIDG 527
                 79***************77653.................3333333333 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.14
      AAA_21 208 liasvderlrer...........gvvflengdgqelparel..SdGtkrllalltallralkkgsllliDEpEngLHPk 273
                  + ++d  ++e+           ++v l +g+  ++  r +  S G k+ la+  ++l ++   +ll++DE  + L+  
  KKY14602.1 561 RYGRIDATEDEVrhaamrahiheHIVRLPEGYNTKVGERGMmiSGGEKQRLAVSRLILKDP---PLLFFDEATSALDTY 636
                 4455555555556667777777788888888888888888889999999988888888888...*******88888764 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.9e-05     0.022       8      38 ..     495     542 ..     492     667 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.9e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee.................e 38 
                 ++++G+sG+GK+t lr l++  d ++                      
  KKY14602.1 495 VAIVGPSGCGKSTILRLLFRFWDPQSGRILidgqdirdisledlrkaI 542
                 589***************998753322222333333333333333330 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0    0.0002      0.15       5      49 ..     495     538 ..     491     573 .. 0.75
   2 ?    0.2   0.0      0.98   7.3e+02      64      96 ..     620     658 ..     602     661 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladp 49 
                 ++i+G+  +GK+t+l+ l++    +++  + i+ +d rd +l+d 
  KKY14602.1 495 VAIVGPSGCGKSTILRLLFRFWD-PQSGRILIDGQDIRDISLEDL 538
                 78****************98777.555556666666665544443 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.98
      AAA_14  64 kktylflDEiqev......pewekalkslvdegknldvi 96 
                 +  +lf+DE+  +      + + + ++s+++e+ +  v+
  KKY14602.1 620 DPPLLFFDEATSAldtyteQALMQNINSILKEKGRTSVF 658
                 56799****999988887777777888888777565665 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       4.2   3.2e+03     178     215 ..     330     366 ..     310     384 .. 0.64
   2 ?   13.5   0.0   5.9e-05     0.044      19      73 ..     489     538 ..     483     586 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.2
      AAA_15 178 eslkkeeelknvlksaiiklllisakRnvsdedsekks 215
                 + +++e+ +k + ++a++  ++++a ++++d+  +++ 
  KKY14602.1 330 TLINYEA-VKYFNNEAFEVARYDKALKKYEDSSIKVTT 366
                 4455555.677777778888888887777775555443 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 5.9e-05
      AAA_15  19 idlseeltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifenise 73 
                 i+       ++G+ ++GKS+il++l  F + +    +  i i+ +d+++   ++ 
  KKY14602.1 489 IPAGQ-KVAIVGPSGCGKSTILRLLFRFWDPQ----SGRILIDGQDIRDISLEDL 538
                 55555.789****************9999988....6788888888877655555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.7e-05      0.05      22      39 ..     491     509 ..     482     512 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.7e-05
      AAA_29  22 kg.atlltGpsGsGKSTll 39 
                 +g  + ++GpsG GKST+l
  KKY14602.1 491 AGqKVAIVGPSGCGKSTIL 509
                 455899***********98 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.3e-05     0.062      49      67 ..     496     514 ..     486     534 .. 0.86
   2 ?   -3.3   0.0       9.6   7.2e+03     102     126 ..     629     653 ..     625     656 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.3e-05
       Rad17  49 LisGPsGCgkstvvkvLsk 67 
                  i GPsGCgkst+++ L +
  KKY14602.1 496 AIVGPSGCGKSTILRLLFR 514
                 589***********99966 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9.6
       Rad17 102 flsqiesfkeleLkdakylklqklG 126
                   s +++++e  L++  +  l+ +G
  KKY14602.1 629 ATSALDTYTEQALMQNINSILKEKG 653
                 4688999999999999998888777 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00022      0.16       2      38 ..     496     595 ..     495     667 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00022
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCSSS..................................................... CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsellsk..................................................... 37 
                  ++Gp G+GK+++ + + + +          g+++  is+ +l+ k                                                     
  KKY14602.1 496 AIVGPSGCGKSTILRLLFRFWdpqsgrilidGQDIRDISLEDLR-Kaigvvpqdtplfnntiehnirygridatedevrhaamrahihehivrlpegyn 593
                 589****************9855444444444667777777777.447777777777777777777777666666666666666666666666666555 PP

                 .S CS
         AAA  38 .y 38 
                   
  KKY14602.1 594 tK 595
                 51 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   9.8e-05     0.073      22      39 ..     495     512 ..     478     514 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.8e-05
      AAA_23  22 tlItGpNGaGKTTildAi 39 
                 ++I+Gp G+GK+Til+ +
  KKY14602.1 495 VAIVGPSGCGKSTILRLL 512
                 48************9865 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00052      0.39       1      18 [.     495     512 ..     495     587 .. 0.75
   2 ?   -0.9   0.0         3   2.3e+03      72      94 ..     651     673 ..     616     729 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00052
      AAA_18   1 IlltGtpGvGKttlakeL 18 
                 +++ G++G+GK+t+ + L
  KKY14602.1 495 VAIVGPSGCGKSTILRLL 512
                 689*************99 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 3
      AAA_18  72 eegknlvidghlaeleseaakdi 94 
                 e+g + v+  h+   +++++k+i
  KKY14602.1 651 EKGRTSVFVAHRLRTIFDSDKII 673
                 44555555444444444444432 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00012     0.087       2      57 ..     492     543 ..     491     578 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
      AAA_24   2 klkiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevv 57 
                 ++k++i+Gpsg GK+t+++ l   + f d   G   +d+ ++ di s+ed+++++ 
  KKY14602.1 492 GQKVAIVGPSGCGKSTILRLL---FRFWDPQSGRILIDGQDIRDI-SLEDLRKAIG 543
                 689****************99...888888888888888888888.7777777765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00017      0.12      20      50 ..     479     509 ..     464     516 .. 0.76
   2 ?   -3.6   0.0         9   6.8e+03     165     188 ..     638     661 ..     622     661 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
      AAA_25  20 pprrwlvkgllpagelallaGapgtGKttla 50 
                 +p    +   +pag  ++++G++g+GK+t++
  KKY14602.1 479 RPILRNLNLTIPAGQKVAIVGPSGCGKSTIL 509
                 44444455589******************97 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 9
      AAA_25 165 vgalvealeriarrtgaavllvhH 188
                 ++al++++++i +++g + ++v H
  KKY14602.1 638 EQALMQNINSILKEKGRTSVFVAH 661
                 589999999999999999999988 PP

>> GPAT_N  Glycerol-3-phosphate acyltransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1      0.11        80      37      62 ..     199     224 ..     194     233 .. 0.85
   2 ?    7.7   0.0    0.0045       3.4       5      50 ..     633     679 ..     629     684 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.11
      GPAT_N  37 lYqNYknAVlqsGipkAdeivlsnma 62 
                 ++q  +nAV+ s ++kA   v  n+ 
  KKY14602.1 199 VFQELRNAVFASVAQKAIRNVARNVF 224
                 79999************999998874 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0045
      GPAT_N   5 ldarseeellsvirk.eveagkLpanvaagmeelYqNYknAVlqsGi 50 
                 ld  +e+ l++ i    +e+g+ +  va++++ +++  k  Vl+ G+
  KKY14602.1 633 LDTYTEQALMQNINSiLKEKGRTSVFVAHRLRTIFDSDKIIVLKDGV 679
                 7889*********984689******************9999999986 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         9   6.8e+03      26      51 ..     341     366 ..     326     369 .. 0.81
   2 ?   12.0   0.0   0.00019      0.14      99     120 ..     492     513 ..     470     534 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 9
                  TTTT--HHHHHHHHHHHHHTT-EEEE CS
  RsgA_GTPase  26 kepelslnlldrfLvlaeekgiepvi 51 
                  +++ +++ + d++L  +e++ i+++ 
   KKY14602.1 341 NNEAFEVARYDKALKKYEDSSIKVTT 366
                  66789999999999999999998875 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00019
                  TSEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinall 120
                  ++ +++vG+SG GKSt++  l 
   KKY14602.1 492 GQKVAIVGPSGCGKSTILRLLF 513
                  48899************99875 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0003      0.22       1      20 [.     494     513 ..     494     574 .. 0.78
   2 ?   -2.3   0.0       6.2   4.6e+03      71     114 ..     619     659 ..     605     671 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0003
      AAA_28   1 kivitGgestGKTtlleaLa 20 
                 k++i+G++++GK+t+l+ L 
  KKY14602.1 494 KVAIVGPSGCGKSTILRLLF 513
                 79***************997 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 6.2
      AAA_28  71 aankvlfcDrglldtlaYarayggeaeaeleaaarekrydlvfl 114
                 +++++lf+D  + +  +Y +      +++++++++ek  + vf+
  KKY14602.1 619 KDPPLLFFDEATSALDTYTEQA---LMQNINSILKEKGRTSVFV 659
                 6778888887766666665333...3334555555555555555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00025      0.19       1      21 [.     494     514 ..     494     584 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00025
                 EEEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg 21 
                 +vaivG +  GKSt+++ l++
  KKY14602.1 494 KVAIVGPSGCGKSTILRLLFR 514
                 69***************9987 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00029      0.22      21      49 ..     495     523 ..     486     544 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00029
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrv 49 
                 ++++Gp G GK+t+l+ l + w+ + gr+
  KKY14602.1 495 VAIVGPSGCGKSTILRLLFRFWDPQSGRI 523
                 689*******************9886565 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.3   2.5e+03      70      97 ..     206     233 ..     199     235 .. 0.80
   2 ?    9.6   0.0    0.0007      0.52      19      56 ..     495     532 ..     481     538 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.3
  Zeta_toxin  70 kkaseltqkdaselvekllqeaiengyn 97 
                 + +++++qk+++ +++++++++++  +n
  KKY14602.1 206 AVFASVAQKAIRNVARNVFEHLLKLDMN 233
                 5678899999********9999887666 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0007
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrldpDdlRe 56 
                 + ++G +G+GKs++++ll +  ++q++ + +d+ d+R 
  KKY14602.1 495 VAIVGPSGCGKSTILRLLFRFWDPQSGRILIDGQDIRD 532
                 457899*****************************996 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00024      0.18       9      36 ..     487     514 ..     483     600 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00024
                  S-EBTT-EEEEEESTTSSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   9 fpivqGqrtlipgafgvGktvisqslsk 36 
                  ++i  Gq+++i+g +g+Gk++i++ l +
   KKY14602.1 487 LTIPAGQKVAIVGPSGCGKSTILRLLFR 514
                  57889*****************988776 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00037      0.27      26      56 ..     485     515 ..     481     524 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00037
       AAA_7  26 lelllknkkpvllvGptGtGKtviikdllkk 56 
                 l+l + ++++v +vGp+G+GK++i++ l++ 
  KKY14602.1 485 LNLTIPAGQKVAIVGPSGCGKSTILRLLFRF 515
                 57788999****************9877665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2      0.19   1.5e+02      37     108 ..     174     252 ..     151     302 .. 0.77
   2 ?   -0.1   0.0      0.92   6.9e+02     131     154 ..     350     373 ..     281     388 .. 0.58
   3 ?    5.6   0.0     0.016        12      45      62 ..     490     507 ..     470     512 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.19
   IstB_IS21  37 eLatlsfiekkenivllGpsGvGKshla.......ialgveavraglsvlfvrvedLveelkrarrdgklaralkrllk 108
                 ++ +++++ + + +v  G + +G + +        ++++++a+r+  + +f  + +L  + +++r+ g l+ra++r +k
  KKY14602.1 174 AVGGTAWTVAGAMLVAYGTTRIGAAVFQelrnavfASVAQKAIRNVARNVFEHLLKLDMNFHLNRQTGGLTRAVDRGTK 252
                 555666666777777777777776554211111215799*********************************9998776 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.92
   IstB_IS21 131 feviekryerrsiiitsnlpfaew 154
                 ++   k+ye +si +t+ l f + 
  KKY14602.1 350 YDKALKKYEDSSIKVTTSLAFLNS 373
                 444456778888877777776543 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.016
   IstB_IS21  45 ekkenivllGpsGvGKsh 62 
                  + + ++++GpsG GKs 
  KKY14602.1 490 PAGQKVAIVGPSGCGKST 507
                 56789***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.55
# Mc/sec: 3991.63
//
Query:       KKY14603.1  [L=386]
Description: putative mitochondrial protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-41  140.3   0.0    8.4e-41  140.0   0.0    1.1  1  AIM24     Mitochondrial biogenesis AIM24


Domain annotation for each model (and alignments):
>> AIM24  Mitochondrial biogenesis AIM24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.0   0.0   4.7e-45   8.4e-41       1     201 []      58     298 ..      58     298 .. 0.90

  Alignments for each domain:
  == domain 1  score: 140.0 bits;  conditional E-value: 4.7e-45
                 EEEESSSS-EEEEEE-TT-EEEE-CCGEEEEETTEEEEE------.....--------EEEEEEES.SS-EEEEE--SSSE.EEEEEEG.GTT.EEEEE CS
       AIM24   1 fevlgepssllsvtLspgeelyaerGalvamsgkvemetgllkal.....krlltgeslfllkftakissgtvllapklpg.tivtlel.gggdwlivq 92 
                 fevlg p+sllsvtLsp++ l ++rG++v++sg+++   g+ ++l     +r+  g  + ++k+t ++s++++l+++k+p  ++++l+l g++dw i+q
  KKY14603.1  58 FEVLGAPYSLLSVTLSPSQILHTRRGTFVGLSGNAD---GVVSTLrilnpTRVALGIPFLFQKIT-STSPVNALISAKSPVtSFAVLHLdGTEDWKIAQ 152
                 89**********************************...77777744444477888888888888.4688***********99*****989******** PP

                 GGGEEEEETT-EEEEEEEE--SSGGGTS-EEEEEEESSSEEEEEEECSEEEEEEE.EEEEEEEGGGEEEEETT.............EEEEEEEET.... CS
       AIM24  93 kdafLAatgnveldikfqkglkglfggeglflqkltGrGlvalsgyGaiyeielkageelvvdpghlvafsgs.............lkfdiervg.... 174
                 ++a+LA+tg++ l+i+++ +l+g +++     + +tGrGl+al g+G+iy+++l+a+e+++v+p++++a+s s             ++++i+++g    
  KKY14603.1 153 SKALLAWTGDS-LGISSSLNLRGSIAN--WGESNVTGRGLLALVGQGNIYSVTLQAKEKYTVHPSNVIAYSLSsdlprpyrfksstIRLQIPSLGlnri 248
                 **********9.999998666555432..3459****************************************99999999999998899999977788 PP

                 ...........................T---STTTTS-EEEEEEEEEEEEEESS CS
       AIM24 175 ...........................glkrrligGeglflkltGpgtvllqsr 201
                                            ++ rr+i+G++    ++Gp+t+llqsr
  KKY14603.1 249 lpnskflmdlkssdtwkffttllyrirTWSRRTIWGDR----FEGPTTLLLQSR 298
                 88899999999999************************....***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2644.23
//
Query:       KKY14604.1  [L=622]
Description: putative zinc knuckle domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        0.6    9.5   6.1       0.95    8.8   6.1    1.3  1  SDA1             SDA1
        1.7    8.6  13.0       0.12   12.3   1.1    3.3  3  CLIP1_ZNF        CLIP1 zinc knuckle


Domain annotation for each model (and alignments):
>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   6.1   0.00011      0.95      90     149 ..     142     199 ..      78     268 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00011
        SDA1  90 eeeedsddeddeedwevesddds...eedseggwidvesdeeeieesdesedeeeeeeeeeek 149
                 eeee+s++++d++++e          ++d++g+    +s e+ i++sd+s+ ++ +e     +
  KKY14604.1 142 EEEEESSEKQDMSSEES-----GevpDSDEDGDDFPTDSREDPINISDDSDVSSVDEGGILLN 199
                 22222233333333332.....12334466666555555555666666554444333322222 PP

>> CLIP1_ZNF  CLIP1 zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.1   1.3e-05      0.12       2      17 .]     328     344 ..     328     344 .. 0.97
   2 ?    3.3   0.3     0.009        80       9      17 .]     355     363 ..     353     363 .. 0.81
   3 ?   -0.5   0.6      0.14   1.2e+03       4       8 ..     374     378 ..     374     382 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.3e-05
   CLIP1_ZNF   2 pYCdnCEvFG.HdTedC 17 
                 +YCd+C+  + H +++C
  KKY14604.1 328 KYCDHCGARDeHKAQNC 344
                 7**************** PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.009
   CLIP1_ZNF   9 vFGHdTedC 17 
                 + GHd+e+C
  KKY14604.1 355 ERGHDAEQC 363
                 559****** PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.14
   CLIP1_ZNF   4 CdnCE 8  
                 Cd+C+
  KKY14604.1 374 CDLCG 378
                 ****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.51
# Mc/sec: 3691.54
//
Query:       KKY14605.1  [L=1149]
Description: putative small oligopeptide transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     1e-158  529.8  50.6   8.2e-135  450.8  40.8    2.1  2  OPT         OPT oligopeptide transporter protein
    1.6e-30  106.4   0.0      3e-30  105.5   0.0    1.5  1  RabGAP-TBC  Rab-GTPase-TBC domain
  ------ inclusion threshold ------
       0.59    9.4   2.7        1.7    7.9   2.7    1.8  1  DUF4191     Domain of unknown function (DUF4191)


Domain annotation for each model (and alignments):
>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   2.3   8.5e-28   5.1e-24       1      98 [.     111     216 ..     111     222 .. 0.89
   2 !  450.8  40.8  1.4e-138  8.2e-135     133     615 ..     221     736 ..     218     737 .. 0.98

  Alignments for each domain:
  == domain 1  score: 84.9 bits;  conditional E-value: 8.5e-28
         OPT   1 elTlRavvlGillgvlgsavnmyfglrtglvsissipaallafplgkalarilpk.........lslnpgpftikEnvliqtmasaaatl.alatgliv 89 
                 ++T+Ra+++G++lg++++a+nm+f++r ++++i++ +++l+a+p+g  +++++p+         ++l+pg+f+ikE+++i++ma+aa++   + t+ i+
  KKY14605.1 111 CNTIRAWTIGMVLGTIVCALNMLFSMRNPSITITTYVVQLIAYPIGVGWSKVMPDrewnvlgvkFNLSPGKFNIKEHTIIVVMANAAFANtGYFTDTIL 209
                 79************************************************************************************8765045555555 PP

         OPT  90 vipalelyg 98 
                 +i+ +  yg
  KKY14605.1 210 AIEKF--YG 216
                 55555..55 PP

  == domain 2  score: 450.8 bits;  conditional E-value: 1.4e-138
         OPT 133 klifPsglataellkalhkpegee........ksrlkfflivflgsfvwglfplylfpalssfswltwiapknvvlanlf....glgllpltfdwnvia 219
                 + i+Ps+l+ ++ + alh++  +         + r+k fl+vf++sfvw++fp+++f+ l++f+++twi p+n v+++lf    g++llp+tfdw+ i+
  KKY14605.1 221 SAIWPSNLVNVAFMYALHDHSPSDpsksngwsIGRYKWFLYVFAASFVWYWFPGVIFQGLTYFAFVTWIKPNNPVVNQLFgqytGISLLPITFDWTNIT 319
                 689******************9889999*********************************************************************** PP

         OPT 220 ayiGsglivplwvavnmliGavlswgiliPllyysngwypaylp.............ydvteildedgvldyekyigyglmllaalvallylvqfaait 305
                  y+ s+li p+ ++ n+ +G v+++ i+  ++ ys++wy+ ylp             y++++il+ d + + +k+++y++ +l++++ l+y+++fa+i+
  KKY14605.1 320 GYVYSPLISPWHAIGNIALGTVFFFQIITCAIHYSGVWYAEYLPisdnhvwdntqnlYNTSKILNDDYTVNPAKFEAYSPLFLSTTFGLTYGLNFASIA 418
                 *****************************999******************************************************************* PP

         OPT 306 llivhtilkhgkdikaalksarsprteeddrhrrlmrkykdvpmwwylallvlslvigiivvealftqlpvwglllalllafllaivsaiiaGltglnp 404
                 ++i+h+ ++hg++i+a++k +   r e dd+h + mrky++vp ww++++lv++++++++ ++a++t+l++w+l+l+l+++ ++++++++i++ t++  
  KKY14605.1 419 AVISHVTVFHGREIWARFKMT---RGEMDDIHMKMMRKYPKVPTWWFMCVLVVMIAFAFAGIYAWPTHLTWWALILGLAISTVWILPIGLIQAFTNI-- 512
                 *********************...99***********************************************************************.. PP

         OPT 405 vsgigkltqlifgallpgrpvanlvfgavvyaaaaqagdfmqDLKtGhllkasPraqfvaqliGtlvgavvniavlkllvkaygdictadasnaftaPq 503
                 + g++++t++i+g++lpgrp+a+++f++++y+++ q+  f+qDLK++h+lk++Pr++f++q+i+t+++a+v+ avlk+   a++ +c  +++n+ft+P 
  KKY14605.1 513 QLGLNVFTEFIIGYALPGRPLAMMLFKTYGYITMTQGLAFVQDLKLAHYLKVPPRSTFWSQFIATVWCALVQLAVLKWAEGAIDGLCDSEQKNSFTCPG 611
                 *************************************************************************************************** PP

         OPT 504 akvfaavavl..lvggk.........kglpwafllgavapfilllllkkfpkkstarklplplafavgfylppsl...sialligglianlwlkrrdae 588
                 a++f++++v+  +vg+k          +l++++l+g+ +p++++ll  k+p +s++r l  pl+f++ + +pp++   +++  ++g+++n +++++++ 
  KKY14605.1 612 ARTFYNASVIwgVVGPKhmfspgalyVSLQYFWLVGFLLPILVYLLAVKWP-RSNIRFLSAPLFFGGMGSIPPASpvnYLTWSVVGFFFNKYIRNKYRG 709
                 ***********999************99***********************.9**********************8884466677************** PP

         OPT 589 wakkynyvlaaGLiaGealmgviiafl 615
                 w+ +yny+++aGL++G+a+++++i+f 
  KKY14605.1 710 WWMRYNYITSAGLDCGLAICTILIFFT 736
                 *************************96 PP

>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.0   5.1e-34     3e-30       2     214 ..     883    1104 ..     882    1105 .. 0.91

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 5.1e-34
  RabGAP-TBC    2 elRgevWklllgyepevkrlkksekkqeksekeksklekseeskelsqIkkDvprtfpesesfknkqgqnqLeriLkaysiynpevg.......... 88  
                  e+R  +W +ll+++p                +e+  l ++  s+  ++I++D  rt+ ++  f+ + ++ +++r+L+a++++ +++           
  KKY14605.1  883 EYRIYLWLILLNVSP-------------LPTDEYLSLVHRGRSPADQKIRNDTFRTLATDPLFQRRVTEASITRVLNAVAWNLHDIKqenpltpeip 966 
                  688888999999866.............334455556666667889************99************************************* PP

  RabGAP-TBC   89 .............YcqGmndivaplllvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeegldlelfaikwfl 172 
                               Y+qGmn + ap+l    +e+ea+ +f++++ ++ ++ + +  ++g+++ l +++++l+ + pkl+++l ++g++ e++a++ +l
  KKY14605.1  967 pdlstgitcesalYVQGMNVLSAPFLYAARSETEAYALFYHFV-THECPGYIRGAMEGVHKGLALVDKCLSLVEPKLANFLLSKGMHAEIYAFPSVL 1062
                  **************************66679************.9**************************************************** PP

  RabGAP-TBC  173 tlflrefpletvlrlwD.lllegekfvllrvalailklleeel 214 
                  t ++++ pl  vl+lwD l++ g++ ++l +++ +l +l+++l
  KKY14605.1 1063 TFCACTPPLPEVLHLWDfLFAYGPHLNILCIVAQLL-MLKDQL 1104
                  *****************6666999998888888888.555666 PP

>> DUF4191  Domain of unknown function (DUF4191)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.7   0.00029       1.7      16      64 ..     449     499 ..     434     507 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00029
     DUF4191  16 kltrkedkkllwlllaaflvvvvvfvvlglll.gs.lilllilgillgllv 64 
                 k+ rk  k  +w+++ +++v+++ +++  +++ ++ +++ lilg++++++ 
  KKY14605.1 449 KMMRKYPKVPTWWFMCVLVVMIAFAFAGIYAWpTHlTWWALILGLAISTVW 499
                 566666666556655555555555555444554456899999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.36s 00:00:01.28 Elapsed: 00:00:00.53
# Mc/sec: 6473.23
//
Query:       KKY14606.1  [L=260]
Description: putative proliferating cell nuclear antigen [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-54  182.0   3.1    6.2e-54  181.1   3.1    1.4  1  PCNA_N    Proliferating cell nuclear antigen, N-terminal doma
      1e-52  177.6   0.3    1.7e-51  173.7   0.0    2.1  2  PCNA_C    Proliferating cell nuclear antigen, C-terminal doma
    1.5e-06   27.9   0.3    1.9e-06   27.6   0.3    1.1  1  Rad9      Rad9
    2.6e-06   26.7   0.8     0.0001   21.4   0.8    2.0  1  Rad1      Repair protein Rad1/Rec1/Rad17
    0.00025   20.3   0.4     0.0014   17.8   0.1    1.9  2  Hus1      Hus1-like protein


Domain annotation for each model (and alignments):
>> PCNA_N  Proliferating cell nuclear antigen, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.1   3.1   1.7e-57   6.2e-54       1     124 [.       3     126 ..       3     127 .. 0.98

  Alignments for each domain:
  == domain 1  score: 181.1 bits;  conditional E-value: 1.7e-57
                 CEEEEESSHHHHHHHHHHHTTTCSEEEEEEETTEEEEEEE-TTSSEEEEEEEEGGGSSEEEESS-EEEEEEHHHHHHHHTTSTTTSEEEEEEETTSSEE CS
      PCNA_N   1 mlearleqasllkklleaikdlvneanfdcddsGislqalDsshvaLvslelrsegfekyrCDrnlalgvnlnslskilkcannedsvtlkaedeadtl 99 
                 +learleqa  lkk+++ai+dlv++ nfdc+dsGi lqa+D+shvaLvs+ +++egf+ +rCDrn+alg+nl+sl+k+l+ a+ned++tlkaed +d++
  KKY14606.1   3 LLEARLEQAVTLKKVVDAIRDLVQDCNFDCNDSGIALQAMDNSHVALVSMMMKAEGFSPFRCDRNIALGINLTSLTKVLRAAQNEDILTLKAEDAPDVV 101
                 59************************************************************************************************* PP

                 EEEEEECTSSEEEEEEEEEEEBGCE CS
      PCNA_N 100 alvfesekkdkiaeydlklklidld 124
                 +lvfes+++d+i+eyd+kl++id++
  KKY14606.1 102 NLVFESSETDRISEYDIKLMDIDQE 126
                 ********************99983 PP

>> PCNA_C  Proliferating cell nuclear antigen, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.057     2e+02      28     115 ..      24     105 ..       9     114 .. 0.69
   2 !  173.7   0.0   4.6e-55   1.7e-51       1     127 [.     129     255 ..     129     256 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.057
                 T-SEEEEEEETTEEEEEEEETTEEEEEEE--BEESSSGGGCBEEEESS-EEEEEEHHHHHHHGGGGGC-SEEEEEEETTSEEEEEEEE CS
      PCNA_C  28 lsdsvvisvtkegvkfsasGdiGsasivlkqvkdvdkeeeavklelkepvtltfalkYlaeftkatsLservtlslssevPlvveyki 115
                 l ++ +  +   g+  +a       +  ++ v+++ k e ++  + ++ + l   l  l+++ +a+   +  tl+ ++++P vv+   
  KKY14606.1  24 LVQDCNFDCNDSGIALQAMD-----NSHVALVSMMMKAEGFSPFRCDRNIALGINLTSLTKVLRAAQNEDILTLK-AEDAPDVVNLVF 105
                 55555555555555555532.....23445677888889999999999999999999999999998888888876.678888777655 PP

  == domain 2  score: 173.7 bits;  conditional E-value: 4.6e-55
                 ----SS-SEEEEEEHHHHHHHHHHHTTT-SEEEEEEETTEEEEEEEETTEEEEEEE--BEESSSGGGCBEEEESS-EEEEEEHHHHHHHGGGGGC-SEE CS
      PCNA_C   1 gipdseydavvklpssefaricrdlsqlsdsvvisvtkegvkfsasGdiGsasivlkqvkdvdkeeeavklelkepvtltfalkYlaeftkatsLserv 99 
                 gipd+ey a++++ps+ef+ricrdl  +s+sv i ++k+gvkfs++GdiG++s++++q+++vdk+ + v ++l++pv+ltf+lkYl++f ka+sLse+v
  KKY14606.1 129 GIPDTEYAATIEMPSMEFQRICRDLIAMSESVAIEASKDGVKFSCQGDIGNGSVTVRQHTNVDKPHQDVSINLSDPVSLTFSLKYLVNFCKASSLSEKV 227
                 8************************************************************************************************** PP

                 EEEEETTSEEEEEEEETTCEEEEEEE-B CS
      PCNA_C 100 tlslssevPlvveykikdvgllayllak 127
                 ++ ls+evPl+vey++ +++l+ yl++k
  KKY14606.1 228 KICLSQEVPLLVEYNLGSGFLRYYLAPK 255
                 ******************9998777776 PP

>> Rad9  Rad9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.3   5.2e-10   1.9e-06       3     209 ..      16     217 ..      14     236 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 5.2e-10
        Rad9   3 ralqclsrigdelyleisedglelrtvnssrSayalvtlkksfFdkyekevseqirckilvKsvlsvfrslsakektvekvkisidekksrlivqllCk 101
                 +++ ++  + ++ +++ ++ g++l+++++s+ a +++ +k + F+ +  + + +i + i++ s+ +v+r  +a+++ + ++k +   +  +l+++   +
  KKY14606.1  16 KVVDAIRDLVQDCNFDCNDSGIALQAMDNSHVALVSMMMKAEGFSPF--RCDRNIALGINLTSLTKVLR--AAQNEDILTLKAEDAPDVVNLVFE-SSE 109
                 66667777778999*********************************..99*****************9..555776665555555566666665.467 PP

        Rad9 102 hgvkkthkisledseslkavfdkettpsklriksrvLsdllehfsssleeitielakervllksyeeeekdnkkalstelside.eeFeqyqlaedvei 199
                  + + ++ i+l d ++ ++ +     + +++++s  ++ +   +    e ++ie++k+ v+++   + ++++  +++    +d+ ++  +++l   v++
  KKY14606.1 110 TDRISEYDIKLMDIDQEHLGIPDTEYAATIEMPSMEFQRICRDLIAMSESVAIEASKDGVKFSCQGDIGNGS-VTVRQHTNVDKpHQDVSINLSDPVSL 207
                 78899****************99999************************************8877777777.78888888887333345566666*** PP

        Rad9 200 tlslkefkal 209
                 t+slk +  +
  KKY14606.1 208 TFSLKYLVNF 217
                 ****976443 PP

>> Rad1  Repair protein Rad1/Rec1/Rad17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.8   2.9e-08    0.0001     133     261 ..     102     229 ..       3     234 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.9e-08
        Rad1 133 vliLee..agvtttcelsTyepeedldleldrqevvlkvilkselLhsalteLdatskklkilassekkapvfalsakgelgssevefpneksvlekfe 229
                 +l++e   ++   + +++ ++++ +  l   ++e ++++ + s+ ++ + ++L a s+++ i as+       ++s +g++g+ +v + +  +v +  +
  KKY14606.1 102 NLVFESseTDRISEYDIKLMDID-QEHLGIPDTEYAATIEMPSMEFQRICRDLIAMSESVAIEASKD----GVKFSCQGDIGNGSVTVRQHTNVDKPHQ 195
                 45555433444444555555555.455666789*******************************995....89********************988776 PP

        Rad1 230 vs.sl.sessessYkfallkkaakalalssKvsl 261
                  + +  s++++  + +++l +  ka +ls+Kv++
  KKY14606.1 196 DVsINlSDPVSLTFSLKYLVNFCKASSLSEKVKI 229
                 5543357777777*******************98 PP

>> Hus1  Hus1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   3.8e-07    0.0014       5      98 ..       6      93 ..       3     169 .. 0.89
   2 ?    0.2   0.0     0.088   3.2e+02      13     107 ..     146     237 ..     133     243 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.8e-07
        Hus1  5 aqltdaetlkkvlqslsklgkecilrltpeklrfiiiteaddgvqvwaqlqvdaiFeeyeieSndeneInlevdlaaLlraLksaeaaksvqlr 98
                a+l++a tlkkv+ +++ l ++c    +++ + ++ +  +++ v ++  + + + F+ ++++     +I+l ++l +L ++L+ a++   ++l+
  KKY14606.1  6 ARLEQAVTLKKVVDAIRDLVQDCNFDCNDSGIALQAM--DNSHVALVSMMMKAEGFSPFRCD----RNIALGINLTSLTKVLRAAQNEDILTLK 93
                7899999******************************..89********************7....469******************8877776 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.088
        Hus1  13 lkkvlqslsklgkecilrltpeklrfiiite.addgvqvwaqlqvdaiFeeyeieSndeneInlevdlaaLlraLksaeaaksvqlrLtkkgrvpl 107
                 +++++  l ++   + +  +++ + f ++ +  ++ v v    +vd+  ++++i+    + ++l+ +l+ L+   k ++ +++v++ L+++  vpl
  KKY14606.1 146 FQRICRDLIAMSESVAIEASKDGVKFSCQGDiGNGSVTVRQHTNVDKPHQDVSINLS--DPVSLTFSLKYLVNFCKASSLSEKVKICLSQE--VPL 237
                 666666666666666666666666666666655555555555555655555555433..36666666666666666666666666666555..555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.33s 00:00:00.90 Elapsed: 00:00:00.50
# Mc/sec: 1565.49
//
Query:       KKY14607.1  [L=336]
Description: putative pyridoxine kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-11   42.8   0.0    5.7e-11   42.3   0.0    1.3  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
    1.8e-05   24.2   0.0    6.3e-05   22.4   0.0    1.8  2  PfkB          pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   6.4e-15   5.7e-11      86     189 ..      89     192 ..       4     224 .. 0.74

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 6.4e-15
                   TSSEEEE---SSCTSSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHH.TT-SEEEEEEGGS-SSSEEEEEEEE.TS CS
  Phos_pyr_kin  86 kvpvVlDPVmvaksgselleeeavealkeeLlplatvitPNlpEaeaLlgekikteedmkeaakkllk.lgakaVlikGghlegeeavvtdvly.dg 180
                   ++  VlDPVm  ++g+  ++e++v a+k+ ++ +a++i PN +Eae L+g ki++++++ +a ++l++     ++li+  +l+++ + ++ vl   g
    KKY14607.1  89 SFFWVLDPVMG-DQGRLYVKEDTVPAFKK-IIGHADLILPNQFEAEILSGIKIDSLSTLTKAITHLHRtHSIPHILITSIRLPDTPTSTRPVLTvIG 183
                   3478*****95.78999***********8.**************************************8899*********9887777777777555 PP

                   SEEEEEEEE CS
  Phos_pyr_kin 181 eeveeleae 189
                   ++ ++ +++
    KKY14607.1 184 STSKTDSTP 192
                   555555555 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0     7e-09   6.3e-05     173     226 ..     110     164 ..      47     165 .. 0.86
   2 ?   -1.4   0.0      0.12   1.1e+03     256     271 ..     208     223 ..     206     263 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 7e-09
                 HHHHHHHHHCTESEEEEEHHHHHHHHTSCTHSHHHHHHHHHHHHHTTS.SEEEEE CS
        PfkB 173 fkeallellaladllkpneeElealtgekledieealaalhklkakga.ktvvvt 226
                 +++a+++++ +adl+ pn+ E+e+l+g k+++   +++a+ +l+ ++   ++++t
  KKY14607.1 110 TVPAFKKIIGHADLILPNQFEAEILSGIKIDSLSTLTKAITHLHRTHSiPHILIT 164
                 78999*************************9999999999999998888998888 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.12
                 THHHHHHHHHHHHHHT CS
        PfkB 256 GAGDsfvggflaalle 271
                 G+GD f++ +l+ l e
  KKY14607.1 208 GTGDLFAALMLVRLRE 223
                 99*****999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 2076.24
//
Query:       KKY14608.1  [L=431]
Description: putative bah domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 2622.33
//
Query:       KKY14609.1  [L=121]
Description: hypothetical protein UCRPC4_g06678 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-20   71.9   4.9    4.8e-20   71.9   4.9    2.2  2  DUF3602   Protein of unknown function (DUF3602)


Domain annotation for each model (and alignments):
>> DUF3602  Protein of unknown function (DUF3602)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   1.6   3.1e-05      0.56      30      45 ..       3      18 ..       1      20 [. 0.81
   2 !   71.9   4.9   2.7e-24   4.8e-20       1      81 []      14      90 ..      14      90 .. 0.98

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.1e-05
     DUF3602 30 safstGRGGaGNihss 45
                +++s GRGG GNi+ +
  KKY14609.1  3 ENVSHGRGGQGNIGPD 18
                57899********965 PP

  == domain 2  score: 71.9 bits;  conditional E-value: 2.7e-24
     DUF3602  1 NiikdktkytdgeivrtgpqgsktdgsttsafstGRGGaGNihssdrerpe..trkdedvereearrkeeaeeyhvGRGGaGN 81
                Ni++d t y d++ivr+gp g+++dg    a+s+GRGGaGNi+ s++ +p+    +d++v++e + ++   e+yhvGRGG+GN
  KKY14609.1 14 NIGPDPTPYADAGIVREGPVGDQGDG----AYSAGRGGAGNIG-SPGLKPTsgNAHDREVVPELSIQP-GYEDYHVGRGGKGN 90
                9*************************....*************.899***9999*************9.899**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       193  (0.0107647); expected 358.6 (0.02)
Passed bias filter:                      127  (0.0070835); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 855.17
//
Query:       KKY14610.1  [L=165]
Description: putative atp synthase subunit delta [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-16   59.8   0.1    2.6e-16   59.3   0.1    1.2  1  ATP-synt_DE_N  ATP synthase, Delta/Epsilon chain, beta-sandwi


Domain annotation for each model (and alignments):
>> ATP-synt_DE_N  ATP synthase, Delta/Epsilon chain, beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.1   1.4e-20   2.6e-16       2      71 ..      37     107 ..      36     114 .. 0.94

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 1.4e-20
                    EEEEEESSSEEEEEE.EEEEEEEESSSEEEE-TT--SEEEEEESEEEEEEEGGGEEEEEEESSEEEEEETT CS
  ATP-synt_DE_N   2 kleivtpervvfsge.veevvaptteGelgilpgHaplitaLkpgelriktedgeeesiavsgGflevqdn 71 
                    kl++  p + +++ + v +v +p+++Ge+g+l++H+p i +Lkpg ++i +e g  + +++sgGf+ vq+ 
     KKY14610.1  37 KLSLALPHQAIYKSTdVVQVNIPAETGEMGVLANHVPSIEQLKPGLVEIIEESGGSKQFFLSGGFAVVQPG 107
                    78999999****9999****************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1194.00
//
Query:       KKY14611.1  [L=804]
Description: hypothetical protein UCRPC4_g06680 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1221  (0.068102); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.53
# Mc/sec: 4556.23
//
Query:       KKY14612.1  [L=715]
Description: hypothetical protein UCRPC4_g06681 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-05   23.9   0.0    0.00011   22.8   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
     0.0013   19.4   0.0     0.0029   18.3   0.0    1.6  1  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.2e-08   0.00011      42      94 ..     431     486 ..     389     488 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.2e-08
                      T-..EEEETTEECCCTSS-TT-EEEEEEES.-CCC-CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11  42 gl..kvefvvadaeklpfednsfDlvvsse.vlhhvedpekalkeiaRvLkpgGll 94 
                      ++  +   v   + ++pf+ ++f +vv ++ + +    +++++ e++RvL+pgG++
       KKY14612.1 431 PPnhRAAKVNTPVMTFPFPQSYFAAVVFRFpAAMSESALRRTIGECYRVLQPGGYI 486
                      3235333478888899*************966666699****************98 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.2e-07    0.0029       7      97 .]     391     484 ..     386     484 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.2e-07
                      TTSHHHHHHHCTSTSSEEEEEES..SHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEE CS
  Methyltransf_25   7 GtGrltlalakrlgkakvtgvDi..seemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpg 96 
                      G+ ++++++a+ +  a+v+ +    +++ml++  ++a  + +  ++  v+  + ++pf+++ f +vv ++    +s++ l++++ e++rvL+pg
       KKY14612.1 391 GNDDWSFYCAETYTTATVHSLNSmvQPSMLKESVTEAWPAPPnhRAAKVNTPVMTFPFPQSYFAAVVFRFP-AAMSESALRRTIGECYRVLQPG 483
                      5556677777776556665555433688888877777666564466667788899*************866.458999**************** PP

                      E CS
  Methyltransf_25  97 G 97 
                      G
       KKY14612.1 484 G 484
                      9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 4393.55
//
Query:       KKY14613.1  [L=2238]
Description: putative pre-mrna splicing helicase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   8.7e-163  539.6   0.5    3.6e-92  308.2   0.0    2.2  2  Sec63          Sec63 Brl domain
    1.5e-49  168.1   0.0    3.3e-27   95.4   0.0    3.5  3  DEAD           DEAD/DEAH box helicase
    5.7e-27   94.1   1.1    1.2e-26   93.1   0.1    2.2  2  Helicase_PWI   N-terminal helicase PWI domain
      3e-26   92.4   0.0      5e-15   55.9   0.0    2.6  2  ResIII         Type III restriction enzyme, res subunit
    1.1e-12   48.3   0.0    4.3e-08   33.5   0.0    3.7  2  Helicase_C     Helicase conserved C-terminal domain
    4.1e-07   30.4   0.0     0.0064   16.8   0.1    3.2  2  AAA_22         AAA domain
    0.00079   18.6   0.0        1.3    8.0   0.0    2.5  2  T2SSE          Type II/IV secretion system protein
     0.0024   17.4   0.0       0.25   10.8   0.0    2.6  2  PhoH           PhoH-like protein
  ------ inclusion threshold ------
       0.14   12.5   0.1         24    5.2   0.2    3.0  2  AAA_19         AAA domain
       0.17   11.8   1.1       0.36   10.8   0.0    2.1  3  Peptidase_S49  Peptidase family S49
        2.6    7.3  11.6        4.5    6.5  11.6    1.3  1  BUD22          BUD22


Domain annotation for each model (and alignments):
>> Sec63  Sec63 Brl domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.2   0.0   2.2e-95   3.6e-92       1     256 [.    1044    1350 ..    1044    1351 .. 0.98
   2 !  229.6   0.4   2.1e-71   3.5e-68       1     256 [.    1879    2219 ..    1879    2220 .. 0.96

  Alignments for each domain:
  == domain 1  score: 308.2 bits;  conditional E-value: 2.2e-95
                  ECHHHHHHHHHT--HHHHHHHHHHS-TT--HHHHHHHHHTSGGGGGS---TTHHHHHHHHHHTSSS--SSSTTSHHHHHHHHHHHHHTT---SSHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63    1 ptelGriaShYyisyetiklfneslkpnttlkdlLeilssasEFeeipvReeEkkelkkLlekvpikvkediespeaKvniLlqayisrlklegsdl 97  
                  +telGriaShYyis++++ ++n +l+p  t+ +l++i++ ++EF++ipvR++Ek el+kLl +vpi+vke+ie+p+aK+n+Llqayisrlkleg +l
  KKY14613.1 1044 STELGRIASHYYISHNSMLTYNHHLQPMITTIELFRIFALSEEFKYIPVRQDEKLELAKLLGRVPIPVKESIEEPQAKINVLLQAYISRLKLEGLAL 1140
                  69*********************************************************************************************** PP

                  HHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS-TT................................................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................. RF
       Sec63   98 vsDlkyilqnairilralveillskgwlslalslleLskmveqrlwds................................................. 145 
                  ++Dl+y++q+a+rilra++ei+l+kgw+s+a+s+l+L+km e+r+w++                                                 
  KKY14613.1 1141 MADLVYVTQSAGRILRAIFEICLRKGWASVAKSALDLCKMAEKRMWPTmtplrqfptcprdiiqkaeridvpwssyfdidpprmgellgvpksgrtv 1237
                  ************************************************************************************************* PP

                  ......S--EEEEEEECEBTTSEEEEEEEEEESSSS-SCTSSS-CH..TSBEEEEEEEEETTTTEEEEEEEEEESSTTTTT..EEEEEEEEEEE-.S CS
                  ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
       Sec63  146 ......lPkleieaevqpitrsklrvevtiereeeeskpdfpwdkk..gksekfwlvvedsendellaikrvtlekkklas..tqevkleftvplse 232 
                        +P+le++a++qpitrs lrve+ i+       p+f+wd+   g +e+fw++ved++++e+l++++++l+++  a+   +e+ ++ft+p++e
  KKY14613.1 1238 cdlvskFPRLELQAQIQPITRSMLRVELAIT-------PNFVWDDAihGGAESFWIIVEDCDGEEVLFYDQFLLKRE-FAMaeVNEHLVDFTIPVTE 1326
                  *******************************.......************************************776.5444799************ PP

                  SCCEEEEEEEEESSSSS-EEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63  233 pgpkqltvrlisdswlgldqevti 256 
                  p+p++++++l+sd+w+++++++++
  KKY14613.1 1327 PMPPNYFISLVSDRWMHSETKIAV 1350
                  ********************9987 PP

  == domain 2  score: 229.6 bits;  conditional E-value: 2.1e-71
                  ECHHHHHHHHHT--HHHHHHHHHHS-TT--HHHHHHHHHTSGGGGGS---TTHHHHHHHHHHTSSS--S.SSTTSHHHHHHHHHHHHHTT---SSHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63    1 ptelGriaShYyisyetiklfneslkpnttlkdlLeilssasEFeeipvReeEkkelkkLlekvpikvk.ediespeaKvniLlqayisrlklegsd 96  
                  p++ ++ia++Y is+ t+++f  sl+++t+lk+lLei++sa+EFe+i++R++E+++l++++++vp+k++ ++++sp++K ++Llqa++sr++l+  d
  KKY14613.1 1879 PLNPAMIAAYYKISFITMQTFLLSLTARTKLKGLLEIVTSATEFESIQMRRHEEHILRRIYDRVPVKMSqPAYDSPHFKSFVLLQAHFSRIQLP-ID 1974
                  6899****************************************************************88************************.** PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS-TT................................................ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................ RF
       Sec63   97 lvsDlkyilqnairilralveillskgwlslalslleLskmveqrlwds................................................ 145 
                  l++D++ i++++ ++l+a+v++l+s+g+l++ +s++e+s+m++q++wd+                                                
  KKY14613.1 1975 LAKDQEVIVSKVLNLLSACVDVLSSEGHLNA-MSAMEMSQMIVQAMWDRdsplmqiphfstavvqaangfkyvpstsslksretdqasiyrindiyd 2070
                  ******************************9.***************999*********************************************** PP

                  ....................................S--EEEEEEE....CEBTTSEEEEEEEEEESSS..S-S.......CTSSS-CHTSBEEEEE CS
                  ....................................xxxxxxxxxx....xxxxxxxxxxxxxxxxxxx..xxx.......xxxxxxxxxxxxxxxx RF
       Sec63  146 ....................................lPkleieaev....qpitrsklrvevtiereee..esk.......pdfpwdkkgksekfwl 193 
                                                      +P+l+++++v    ++++ +++ +++tiere +  e +       p++p++k    e++wl
  KKY14613.1 2071 fqeamdpdenpdynklvkklgldnkqlleaanftnkYPSLSLDFKVldkeNVTAGEPSYLDITIERELDedE-EpdttvhaPFYPSKK---MENWWL 2163
                  *************************************************99999999********8777552.246778999999999...****** PP

                  EEEETTTTEEEEEEEEEESSTTTTTEEEEEEEEEEE-.SSCCEEEEEEEEESSSSS-EEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63  194 vvedsendellaikrvtlekkklastqevkleftvplsepgpkqltvrlisdswlgldqevti 256 
                  vv+++++++llaikrvt+ k     + e+kle  vp  +pg+++l + l+sds+ g+dq+ ++
  KKY14613.1 2164 VVGEEKTKNLLAIKRVTIGK-----KLETKLEYIVP--TPGEHELRLILMSDSYFGVDQDPDF 2219
                  ******************87.....58899**9996..5999****************98765 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.0     2e-30   3.3e-27       2     172 ..     544     719 ..     543     725 .. 0.83
   2 ?    0.2   0.0      0.34   5.6e+02     148     170 ..     860     880 ..     852     884 .. 0.79
   3 !   67.4   0.0   7.7e-22   1.3e-18       2     166 ..    1395    1557 ..    1394    1565 .. 0.82

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 2e-30
                 HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHS.......TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHH CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplil.gggdvlvaaeTGsGKTlaflipvlqivyet.......kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqls 92 
                 +iQ +++p++  ++g++l++a+TGsGKT ++++ +l+++ ++          +  k+++++P+++L+++++ n+ k+++++++rv+ ++g+ +    ++
  KKY14613.1 544 RIQTKCYPTAFnDDGNMLICAPTGSGKTNVAMLTMLREIGKNrnpetgeIMLDDFKIVYIAPLKALVQEQVGNFGKRLEPYGIRVSELTGDRQL--TKQ 640
                 79*******996668************************8876655554345559******************************977775444..455 PP

                 HHHTTCSEEEEEHHHHHHHH..HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHH CS
                 xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  93 kldngvdivvgtpgrlddll..stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkd 172
                 ++ ++++++v+tp+++d ++   t +  ++ vr++++DE++ l d+ +++ +++i++++ ++ +++    ++i lSATlp +
  KKY14613.1 641 QI-SETQVIVTTPEKWDVITrkATDTSYTNLVRLIIIDEIHLLHDD-RGPVLESIISRTIRKIERTGDPVRLIGLSATLP-N 719
                 66.778***********988753333338888*************8.999999999887666666666778********9.3 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.34
                 HSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 148 qlpqitcdgklqrqvivlSATlp 170
                 q+++  +dg+lq  v+v++ATl 
  KKY14613.1 860 QVEDLFSDGSLQ--VLVCTATLA 880
                 566667788877..*******96 PP

  == domain 3  score: 67.4 bits;  conditional E-value: 7.7e-22
                  HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHHHT CS
                  xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD    2 diQaeaiplil.gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskldn 96  
                  +iQ ++++ ++ ++++v++ a+TGsGKT ++ +++l++ +   + ++ ka++++P +eL+ + l +++ ++++ ++ ++ l ++g+++  +l+ l +
  KKY14613.1 1395 KIQTQVFKSLYdSDDNVFIGAPTGSGKTVCAEFALLHHWS---NPEHGKAVYIAPFQELVDNRLADWQARLQPvAGGKMILSLTGETT-ADLRIL-E 1486
                  79*********66679********************9995...69999************************9556777767776555.688899.9 PP

                  TCSEEEEEHHHHHHHH..HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEE CS
                  xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   97 gvdivvgtpgrlddll..stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlS 166 
                  ++d++++tp+++d +   ++++ n++ v +++ DE ++l  q  +  ++ ++++++ i  + +++ ++i lS
  KKY14613.1 1487 QADLILATPSQWDIISrqWQRRKNVRAVGLFIADELHMLGGQ-GGYVYEVVVSRMHYIAIQSESSLRIIGLS 1557
                  9************98888455569******************.44455555555555555555555566666 PP

>> Helicase_PWI  N-terminal helicase PWI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       6.8   1.1e+04      24      54 ..     159     187 ..     151     190 .. 0.66
   2 !   93.1   0.1   7.4e-30   1.2e-26       4     111 .]     304     416 ..     301     416 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6.8
  Helicase_PWI  24 kDaeeaqelaeevleiLkseadelrelEnkL 54 
                   +D+++  ++++e+ ++L ++++   +  n+L
    KKY14613.1 159 DDNMKDHDKKKEIDDLLGTSMTP--KQFNEL 187
                   47788888999999999888533..333555 PP

  == domain 2  score: 93.1 bits;  conditional E-value: 7.4e-30
  Helicase_PWI   4 elsvkeidafWLqrelkkiykDaeeaqelaeevleiLkseade.....lrelEnkLvelldydkfdliklllknrekivyctklaqa.qseeekqei 94 
                    ++++eida+WLqr++ ++y+D++ +q +++ +l+iL+  + e     lr++En+L++l+dy++ +l+  l++nr++iv++t++++  ++ + ++ +
    KKY14613.1 304 FIPAHEIDAYWLQRQIGSVYSDPHIQQIKTQGALQILSGRTAEgeeilLRDIENDLMDLFDYESPELVARLVSNRDRIVWITRWRRVvEDGQARAVV 400
                   6899**********************************99666678999*************************************62677888889 PP

  Helicase_PWI  95 eeemkekpeleeileel 111
                   e+e+ +  + + il+el
    KKY14613.1 401 EKEIVDA-GHQLILDEL 416
                   9999988.999999987 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   3.1e-18     5e-15      21     170 ..     551     718 ..     530     719 .. 0.86
   2 !   33.7   0.0   2.1e-11   3.4e-08      21     148 ..    1395    1534 ..    1365    1557 .. 0.73

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 3.1e-18
                 .....TTSEEEEEESTTSTHHHHHHHHHHHH-S...............-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SE CS
      ResIII  21 s...krdkrglikmaTGtGKTlvaaklierllkkgkee..........kflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkki 106
                     ++d ++li ++TG+GKT va+ ++ r   k+++           k++ ++p k+l++    +f k l+++      +++gd++   +++++++++
  KKY14613.1 551 PtafNDDGNMLICAPTGSGKTNVAMLTMLREIGKNRNPetgeimlddfKIVYIAPLKALVQEQVGNFGKRLEPYG-IRVSELTGDRQLT-KQQISETQV 647
                 1455788999**************888888888777668*********************************985.5778888998888.8******** PP

                 EEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS......T.....TTHHHHHT---SEEEEEESS-S CS
      ResIII 107 lvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak.....k.....swreilekfkeavllglTATpe 170
                 +vtt ++ d +    ++++++   +   +iiiDE H l+++     +     ++r+i +  ++  l+gl+AT++
  KKY14613.1 648 IVTTPEKWDVIT---RKATDTSYTNLVRLIIIDEIHLLHDDrgpvlEsiisrTIRKIERTGDPVRLIGLSATLP 718
                 ************...8889999999999************866555156666999999999***********86 PP

  == domain 2  score: 33.7 bits;  conditional E-value: 2.1e-11
                  ............TTSEEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.....GEEEESSS-B--.......-S CS
      ResIII   21 s..........krdkrglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseayke.igkkvsgdkkkakekdstnkk 105 
                  +          + d +++i ++TG+GKT++a ++l  + ++ ++  k++ ++p ++l++  l +++  l++ +      +++g++     +  ++++
  KKY14613.1 1395 KiqtqvfkslyDSDDNVFIGAPTGSGKTVCAeFALLHHWSNPEH-GKAVYIAPFQELVDNRLADWQARLQPVAGGkMILSLTGETTAD-LRILEQAD 1489
                  03334444555888999**************7777777776555.6*******************99998875444333356666655.66779*** PP

                  EEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS......T CS
      ResIII  106 ilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak.....k 148 
                  ++++t ++ d +s   ++++ ++   +  ++i DE H lg++     +
  KKY14613.1 1490 LILATPSQWDIIS---RQWQRRKNVRAVGLFIADELHMLGGQggyvyE 1534
                  *************...999********************997443330 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   2.7e-11   4.3e-08      14     109 ..     780     922 ..     767     924 .. 0.68
   2 !    8.8   0.0    0.0012       1.9      33     109 ..    1673    1759 ..    1612    1760 .. 0.74

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 2.7e-11
                 TTTSEEEEEESSHHHHHH.HHHH..........................HHHT............TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C  14 eeggkilifvntidrlek.vkll..........................lekk............gikvavlhgelpqnereeileqfnkgesdvLiat 73 
                 ++++++lifv+++++  k +k++                          +                +   ++h+ ++  +r ++ + f +g+ +vL++t
  KKY14613.1 780 QHRNQMLIFVHSRKETAKtAKYIrdkaiemetidqilrsdaasrqilqeE--AevvndpnlkdlmPYGLGIHHAGMSRADRTQVEDLFSDGSLQVLVCT 876
                 66778888888888553444444444444444455555555555554430..13444444555567888899999************************ PP

                 GGGTSSSTSTTESEEE.....ESSSS......SSHHHHHHHHTTSSS CS
  Helicase_C  74 dvaerGidipkvnlVi.....nfdlp......rnvtsyiqriGRtgR 109
                   ++ G+++p +++Vi     ++++        +++++ q+ GR+gR
  KKY14613.1 877 ATLAWGVNLP-AHTVIikgtqIYSPEkgswveLSPQDVLQMLGRAGR 922
                 *********9.666662554444444666555557************ PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0012
                  HHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS...........SSHHHHHHHHTTSSS CS
  Helicase_C   33 klllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp...........rnvtsyiqriGRtgR 109 
                  + l e+ +  + ++h  l++ +++ + + f+ g ++v++a++++   id++ ++lV+ ++ +           + ++++ q+ GR+ R
  KKY14613.1 1673 TALAESLKHGIGYYHEALSKTDKRIVKHLFQIGAIQVMLASRDVCWEIDFT-AHLVVVMGTQyfegrehryvdYPISEVLQMFGRATR 1759
                  2223444889999*************************************5.999999999977775544433335*********998 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   3.9e-06    0.0064       5     121 ..     557     704 ..     554     716 .. 0.58
   2 !    9.5   0.0   0.00068       1.1       9     104 ..    1412    1526 ..    1406    1555 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.9e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee..............................erpevvfvtlpsstsskdllrellralglelkaerl 73 
                 +g +++++++G+GKT ++   + + ++ ++ +                               +r e + + ++++t+ ++l ++  +++++   + + 
  KKY14613.1 557 DGNMLICAPTGSGKTNVAMLTMLR-EIGKNRNPetgeimlddfkivyiaplkalvqeqvgnfgKRLEPYGIRVSELTGDRQLTKQQISETQVIVTT-PE 653
                 6889***********887555544.34443333446666555555555555554444444433333333455555555555555555555544444.55 PP

      AAA_22  74 sseellealeqalraravielliiDEaqhlr..seealeeL..rsllnlsrk 121
                 + + + ++ ++ + +  v +l+iiDE++ l   +  +le +  r++ +++r+
  KKY14613.1 654 KWDVITRKATDTSYTNLV-RLIIIDEIHLLHddRGPVLESIisRTIRKIERT 704
                 555555777777777777.***********6655999999844333433444 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00068
      AAA_22    9 vvtGesGtGKTtllrrlleqldeeakaee......................erpevv..fvtlpsst.sskdllrellralglelkaerlsseelle 80  
                  ++ +++G+GKT++++  l  +  ++++e+                      +  +v+  ++ l+  + + +dl  ++l++ +l l + + + + + +
  KKY14613.1 1412 FIGAPTGSGKTVCAEFALLHH--WSNPEHgkavyiapfqelvdnrladwqaRLQPVAggKMILSLTGeTTADL--RILEQADLILAT-PSQWDIISR 1503
                  67789**********999998..55555555888888888888777777753334446555555555344444..667777776666.777777779 PP

      AAA_22   81 aleqalraravielliiDEaqhlr 104 
                  + ++  + rav +l+i DE + l 
  KKY14613.1 1504 QWQRRKNVRAV-GLFIADELHMLG 1526
                  99999999999.********9994 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00098       1.6     123     156 ..     551     585 ..     523     595 .. 0.80
   2 !    8.0   0.0    0.0008       1.3      78     150 ..    1350    1430 ..    1336    1444 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00098
       T2SSE 123 rkavrerglilvsGgTgsGKttll.yallkeinks 156
                  +a +  g++l+  +TgsGKt ++  ++l ei k+
  KKY14613.1 551 PTAFNDDGNMLICAPTGSGKTNVAmLTMLREIGKN 585
                 56777889*************77647788888766 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0008
       T2SSE   78 vrlrvvllPvvagealviR...kksakeltlddlga....eealkekiaevlrkavrerglilvsGgTgsGKttll.yall 150 
                  v+++ ++lP    ++  +R      +++l+ +d++a      ++++ + +v ++   +  ++ +  +TgsGKt+ +  all
  KKY14613.1 1350 VSFQRLILPERFPPHTPLRdmqPAPVQALKRKDYQAlypkFDRFNKIQTQVFKSLYDSDDNVFIGAPTGSGKTVCAeFALL 1430
                  66777777777777777774421122333444443311113444577777888888889***************9944444 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.025        41      14      43 ..     552     581 ..     540     590 .. 0.74
   2 !   10.8   0.0   0.00015      0.25       6      61 ..    1394    1450 ..    1391    1464 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.025
                 HHHHH-SEEEEE--TTSSTTHHHHHHHHHH CS
        PhoH  14 ealkkndivfaiGpaGtGKtylavalavea 43 
                 +a ++   + + +p+G+GKt +a+ + ++ 
  KKY14613.1 552 TAFNDDGNMLICAPTGSGKTNVAMLTMLRE 581
                 555566678899***********9876665 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00015
                  SHHHHHHHHHHH.H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T CS
        PhoH    6 tkeQkeylealk.kndivfaiGpaGtGKtylavalavealkkkkvkriiltrpavea 61  
                  +k Q++++++l  + d vf+ +p+G+GKt  a  + ++ +++ +  + +++ p  e 
  KKY14613.1 1394 NKIQTQVFKSLYdSDDNVFIGAPTGSGKTVCAEFALLHHWSNPEHGKAVYIAPFQEL 1450
                  56799999999978889*****************99999999999999999887765 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2     0.015        24      10      31 ..     557     578 ..     552     711 .. 0.72
   2 ?    3.6   0.0     0.046        76      10     114 ..    1408    1525 ..    1397    1544 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.015
      AAA_19  10 ekvllvtaGpGtGKTrvlkhiv 31 
                 ++++l+ a+ G+GKT v +  +
  KKY14613.1 557 DGNMLICAPTGSGKTNVAMLTM 578
                 5789***********9865433 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.046
      AAA_19   10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae...........atTiHrlalldfddlltealelle... 92  
                  ++++++ a+ G+GKT + + ++ +  ++ +   + ++++ f +   ++l++   a +++            +T   l +l+  dl+           
  KKY14613.1 1408 DDNVFIGAPTGSGKTVCAEFALLHHWSNPEH-GKAVYIAPFQELVDNRLADWQ-ARLQPvaggkmilsltGETTADLRILEQADLIL------Atps 1496
                  5689999********9998776665555533.366777777766667777644.333333455555555544555444455544442......1333 PP

      AAA_19   93 .......eaeeekklqeeellivDEfqdv 114 
                         + +++k++++  l+i DE  ++
  KKY14613.1 1497 qwdiisrQWQRRKNVRAVGLFIADELHML 1525
                  34566666667777744448888888776 PP

>> Peptidase_S49  Peptidase family S49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00022      0.36      83     149 ..     758     827 ..     709     832 .. 0.87
   2 ?   -4.3   0.1       9.6   1.6e+04     120     144 ..    1003    1027 ..    1003    1030 .. 0.79
   3 ?   -3.9   0.0       7.1   1.2e+04      28      63 ..    1540    1575 ..    1535    1577 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00022
                    HHHHHHHHHHHHHHHHHHHHHHHHHT...S-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHH CS
  Peptidase_S49  83 eereilqrlldetyqqFvqtVaknRn...lsveqvdkiAegrvltgqqAlklgLvdelgtvddavaelee 149
                    ++ ++l+++ d  y ++++ V ++Rn   + v   ++ A+ + + +++A++ + +d++  +d a +++ +
     KKY14613.1 758 KAIKQLKTMNDVCYTKVLEQVGQHRNqmlIFVHSRKETAKTAKYIRDKAIEMETIDQILRSDAASRQILQ 827
                    4556788899999************96656689999**************************99877544 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 9.6
                     CHEEEHHHHHHTTSSSEETSHHHHH CS
  Peptidase_S49  120 grvltgqqAlklgLvdelgtvddav 144 
                     g+ + g++Al+++ vd + +   ++
     KKY14613.1 1003 GAEYAGDEALEQKRVDLIHSAAAIL 1027
                     57899**********9988766655 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 7.1
                     SSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEE CS
  Peptidase_S49   28 adkivanpstivgsiGvitqllnlenlldklgvevq 63  
                       +i ++++++  +iG+   l+n +++ + +g   +
     KKY14613.1 1540 MHYIAIQSESSLRIIGLSVPLSNARDVGEWIGAGKH 1575
                     57899************9999999888877776665 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  11.6    0.0027       4.5     165     250 ..     173     273 ..     138     314 .. 0.45

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0027
       BUD22 165 e........eeesdkeeesedsed...........eekeeseddeeeeeededdedaee..........deedeeaeerelaqydgllasddededeyn 234
                 +        +             +           ++ ++++dde++e++++d+++ +e          ++edee   r ++  dg +asd+eded++ 
  KKY14613.1 173 DllgtsmtpK-------------QfnelvnlgkkiTDYDAQDDDENAEDDGADEAELDErqgvavvfdeSDEDEEGGGRTYEVRDG-AASDEEDEDDAM 257
                 1223322220.............022333333333334445555555555555555555667779975433333334444444444.559999999333 PP

       BUD22 235 eetdeesseesdssds 250
                 +e + ++   +d++ +
  KKY14613.1 258 SEAEGATALGADGDAN 273
                 3322222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.19u 0.38s 00:00:01.56 Elapsed: 00:00:00.56
# Mc/sec: 11952.53
//
Query:       KKY14614.1  [L=639]
Description: hypothetical protein UCRPC4_g06673 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 4198.45
//
Query:       KKY14615.1  [L=236]
Description: putative velvet complex protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-36  126.6   0.0    4.7e-23   82.4   0.0    2.1  2  Velvet    Velvet factor


Domain annotation for each model (and alignments):
>> Velvet  Velvet factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   4.5e-15   8.1e-11      19      64 ..      11      56 ..       3      75 .. 0.85
   2 !   82.4   0.0   2.6e-27   4.7e-23     142     239 ..      76     197 ..      65     208 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 4.5e-15
                -S-----BS--EEEEEEEETTT-SB--GGG---TTEEEEEEEEETT CS
      Velvet 19 dkdrrpidPppvvqLrvtdaetnsevdveeldssffvvtvdLwsed 64
                 +drrpidPp+++qL++ d+++ns++++++l+++++vv+++L++++
  KKY14615.1 11 GRDRRPIDPPIILQLQILDFNPNSKEHLNDLKYTYWVVHCYLFNNE 56
                35*****************************************955 PP

  == domain 2  score: 82.4 bits;  conditional E-value: 2.6e-27
                 --EESEEE--EEE-EE.EE-TT..........................--EEEEEE---EEESS-EEEEEEEEEEE-B-S--B--S..SEEEEEEEEE- CS
      Velvet 142 kltrnLiGslvasafr.lkdpe..........................dkpgifFvfqDLSVRteGtFrLrfrlvnvgaeavaveekegsapvlaevfS 213
                  + + LiG ++++     +dp+                          ++pg+fF+f+DLSVR +Gt+rL+f l+++     + ++ + ++pv ae++S
  KKY14615.1  76 GIRKLLIGCATVNGLFaPEDPDpetavphpssrvssmtsdipggesfcKQPGTFFIFSDLSVRSPGTYRLKFMLMRIDG---NLTNPGAKVPVEAEAMS 171
                 56678999886665544555556699999999999999999999999999*****************************...899999*********** PP

                 --EEEE-TTT--------HHHHHHHH CS
      Velvet 214 dpFtVysakkFpGvlesTaLskalak 239
                 +pFtV  ak+F  v+esT+L + lak
  KKY14615.1 172 NPFTVDNAKRFDKVQESTNLVRGLAK 197
                 **********************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1647.23
//
Query:       KKY14616.1  [L=343]
Description: putative pre-mrna-splicing factor syf2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-36  126.8  11.8      1e-36  126.8  11.8    2.6  2  SYF2          SYF2 splicing factor
  ------ inclusion threshold ------
      0.067   12.3  12.0       0.12   11.5  12.0    1.5  1  SprA-related  SprA-related family
        1.4    9.2   4.3       0.59   10.5   1.0    1.9  2  DUF778        Protein of unknown function (DUF778)


Domain annotation for each model (and alignments):
>> SYF2  SYF2 splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.5      0.22   1.3e+03      53      71 ..      44      62 ..       4     118 .. 0.50
   2 !  126.8  11.8   1.7e-40     1e-36       4     159 .]     130     338 ..     127     338 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.22
        SYF2 53 kelkpdleaYekqkekale 71
                 e+++d ++    ++k+  
  KKY14616.1 44 AETSVDTDQSASTQSKHNT 62
                2222222111111111111 PP

  == domain 2  score: 126.8 bits;  conditional E-value: 1.7e-40
        SYF2   4 edlerkkalewsaeeaekwekkkkkk.eknedagfsdyedaayrkYkkqlkelkpdleaYekqkekaleka............................ 73 
                 e +erk+a++w+++e+ekw+k+  kk ++++++gf +y ++  + Y +q++e+ ++ ++ + ++ + +  +                            
  KKY14616.1 130 EAFERKRAWDWTIDESEKWDKRVSKKeKHRDEVGFRNYGEEGSKIYRRQIREMAKEDAKRSSSRPDFHRGDgdgrpdqdvdrltayelnkiktllsaaq 228
                 679***********************999************************996666666665554434799************************* PP

        SYF2  74 ..................savsk.eafyrtantlsladhkpseeavdrlveklekqeekrkkfsrrrked.....eegdvtYINerNkkFNkklerfYd 148
                                     +++  ++ +++++++ + ++ps+++vdrlve+l+k+ee r +++r+r +        gdvt+IN++Nk+FN+kl rfYd
  KKY14616.1 229 sggleiveapdgsgelvlLDRHGtYTHPSSNTSTEHIGQQPSRQNVDRLVEDLRKAEETRLRKRRDRGRMndemdAAGDVTFINDKNKVFNQKLRRFYD 327
                 **************9965333332222233345556688********************9999998876655776789********************* PP

        SYF2 149 kytaeIrenLE 159
                 kyt++Ir+++E
  KKY14616.1 328 KYTKDIRDSFE 338
                 **********9 PP

>> SprA-related  SprA-related family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5  12.0     2e-05      0.12      44     131 ..      21     103 ..       6     161 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2e-05
  SprA-related  44 vvsstnsssvdatisdatsinstvktardatasastsesgsvsdtikpssaeqanekadfaaifgqeeesasaakekeqqkkdeqsqq 131
                   ++s+t + +++  + da s+   ++t+ d+ +sast ++ +++ t  ++s +     a faa+ + +++sa +   + +q++  q+ +
    KKY14616.1  21 TTSATPPMTTTDKAGDAESTRKIAETSVDTDQSASTQSKHNTTATSLADSRA-----ARFAALKARAATSAASNLAATRQEASRQTID 103
                   566666666666999**********************************999.....89********997777777777777766655 PP

>> DUF778  Protein of unknown function (DUF778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2      0.36   2.2e+03      99      99 ..      50      50 ..       7      90 .. 0.45
   2 ?   10.5   1.0   9.9e-05      0.59      52      93 ..      92     145 ..      72     201 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.36
      DUF778 99 t 99
                t
  KKY14616.1 50 T 50
                1 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 9.9e-05
      DUF778  52 lmesrarrtrrePfklltqggkqailvlwerllallqPdev............s 93 
                 + ++ a+r+ ++P++l++ + +qai+  +  + +  +P+              s
  KKY14616.1  92 ATRQEASRQTIDPSQLTALSRRQAIATHNLLKAESDSPEAFerkrawdwtideS 145
                 57899************************9999999999884444433333321 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1268  (0.0707234); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2202.45
//
Query:       KKY14617.1  [L=686]
Description: putative mitochondrial respiratory complex i chaperone [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-05   24.7   1.3       0.53   10.5   0.0    5.8  7  PPR_2     PPR repeat family
    0.00033   21.1   1.3        2.4    8.7   0.0    4.7  5  TPR_19    Tetratricopeptide repeat
     0.0077   16.0   0.0        1.1    9.0   0.1    3.3  3  DUF3368   Domain of unknown function (DUF3368)
  ------ inclusion threshold ------
      0.057   13.7   0.0       0.45   10.8   0.0    2.4  3  DRE2_N    Fe-S cluster assembly protein DRE2 N-terminus


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.5   6.7e+03      10      25 ..     135     150 ..     134     152 .. 0.83
   2 ?   -0.5   0.0      0.33   1.5e+03       7      40 ..     201     234 ..     199     244 .. 0.80
   3 ?    3.7   0.0     0.016        73       5      40 ..     306     341 ..     302     342 .. 0.80
   4 ?    1.7   0.1     0.067     3e+02       9      31 ..     508     530 ..     502     552 .. 0.80
   5 ?   -0.6   0.0      0.35   1.6e+03      17      40 ..     554     576 ..     538     577 .. 0.77
   6 ?    0.3   0.0      0.19   8.3e+02       5      48 ..     578     621 ..     574     623 .. 0.77
   7 !   10.5   0.0   0.00012      0.53       6      40 ..     651     686 .]     649     686 .] 0.88

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.5
       PPR_2  10 IsglckkgkveeAfkl 25 
                 I  l+  g+ ++A+kl
  KKY14617.1 135 IELLAAVGQGDKALKL 150
                 67788899*******9 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.33
       PPR_2   7 NtlIsglckkgkveeAfklfneMkkrglePnsyT 40 
                 N lIs  +  g    A  lf++  + gl+ +  +
  KKY14617.1 201 NMLISRIAGLGLTTAARHLFEKTTQTGLQTSHDS 234
                 9999999999**********99888888776655 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.016
       PPR_2   5 tyNtlIsglckkgkveeAfklfneMkkrglePnsyT 40 
                 t N l ++  + +++++A k +    k+g+ePns T
  KKY14617.1 306 TINGLVKYANTIKDPDSAEKYLALVSKWGFEPNSTT 341
                 55555555667889999999999999*******998 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.067
       PPR_2   9 lIsglckkgkveeAfklfneMkk 31 
                 +++ ++ +++++ A+ +f  M++
  KKY14617.1 508 IMKSFFARKRSDLACLVFGHMRQ 530
                 78999999999999999988876 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 0.35
       PPR_2  17 gkveeAfklfneMkkrglePnsyT 40 
                 g+ e+A ++ + M k  +  ++ T
  KKY14617.1 554 GD-EKAAEMVHNMLKLDIYVDPNT 576
                 55.8999999***99999888776 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 0.19
       PPR_2   5 tyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikgl 48 
                   ++l+ + +++g+    +++f++  +    P+  T+ ++++++
  KKY14617.1 578 LLTSLMLAWANAGEAWRSLQIFDDILNTVEGPSYTTFAVVFRAC 621
                 5566777777777777778889999988889999*******996 PP

  == domain 7  score: 10.5 bits;  conditional E-value: 0.00012
       PPR_2   6 yNtlIsglckkgkveeAfklfneMkkr.glePnsyT 40 
                 y +++ + + +g++++A++l + M+   g  P+++T
  KKY14617.1 651 YLAYLGAIAGNGDYNSAVELVENMEAEtGHAPDAFT 686
                 5577888889***************955******99 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         2   9.2e+03      42      56 ..      96     110 ..      92     117 .. 0.81
   2 ?    3.5   0.1     0.023     1e+02      28      55 ..     132     158 ..     120     169 .. 0.81
   3 ?   -2.3   0.0       1.5   6.9e+03      24      42 ..     231     249 ..     212     268 .. 0.60
   4 !    8.7   0.0   0.00053       2.4       4      57 ..     372     427 ..     370     439 .. 0.81
   5 ?    3.7   0.0      0.02        91       3      27 ..     660     684 ..     659     686 .] 0.83

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2
      TPR_19  42 deAealLdalpeedp 56 
                 +eA++l d ++++  
  KKY14617.1  96 EEAKELADMILRDLT 110
                 899999999998765 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.023
      TPR_19  28 rllLAeallalgqldeAealLdalpeed 55 
                  l ++e+l a gq d+A +l++ l + d
  KKY14617.1 132 EL-YIELLAAVGQGDKALKLVSVLDPID 158
                 44.889**************99887666 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.5
      TPR_19  24 naearllLAeallalgqld 42 
                 + + + ++ ++++ +g+l+
  KKY14617.1 231 SHDSKVAMLRLCIRSGELN 249
                 3344455578888888876 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.00053
      TPR_19   4 egdyaeAlalleqalqedpknaearllL..AeallalgqldeAealLdalpeedpd 57 
                 +gd+++Al++l++  +  +++++++  L   ++ ++  ++d A++lLd+l e +p 
  KKY14617.1 372 AGDFDSALEALQNEDTMTNEDSNLLNKLlvTICSMEPPNYDLAMNLLDTLHERTPT 427
                 79***********777777777777744458999999*************999986 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.02
      TPR_19   3 aegdyaeAlalleqalqedpknaea 27 
                  +gdy +A++l e++ +e  + ++a
  KKY14617.1 660 GNGDYNSAVELVENMEAETGHAPDA 684
                 58************98777777766 PP

>> DUF3368  Domain of unknown function (DUF3368)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.1   0.00025       1.1      20      45 ..     181     206 ..     175     207 .. 0.90
   2 ?   -3.9   0.0       2.9   1.3e+04      21      31 ..     252     262 ..     246     262 .. 0.87
   3 ?    2.9   0.0     0.022        97      24      41 ..     528     545 ..     526     547 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00025
     DUF3368  20 vkplldaLiqaGfrispklyaevLrl 45 
                  + +lda+++   r+ p++++ ++++
  KKY14617.1 181 FNKYLDAMLDGDVRLEPQVLNMLISR 206
                 6789******************9987 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.9
     DUF3368  21 kplldaLiqaG 31 
                 +p++d+L ++G
  KKY14617.1 252 RPIFDSLSEKG 262
                 89*****8887 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.022
     DUF3368  24 ldaLiqaGfrispklyae 41 
                 + ++++++fr  ++ly e
  KKY14617.1 528 MRQMQDTNFRPTADLYTE 545
                 789*******99999976 PP

>> DRE2_N  Fe-S cluster assembly protein DRE2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.2   5.2e+03      62     110 ..      65     112 ..      56     120 .. 0.65
   2 ?   10.8   0.0    0.0001      0.45      19     109 ..     380     477 ..     372     493 .. 0.75
   3 ?   -2.0   0.0      0.89     4e+03       9      51 ..     609     651 ..     608     654 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.2
                 .SS-S----HHHHHHHHTT--TT--EE---H....HHHHHHHHHTEEEE CS
      DRE2_N  62 eeeeelliprkliqkivkaLkpgGklkgqdgkakeaqkleallaGlvie 110
                 e+ e+++++++ ++ +  aL++ G +k+ + + ++++  +++l +l+ +
  KKY14617.1  65 EKVEQIEFSETELHNVLIALTS-GVIKSSKANEEAKELADMILRDLTSD 112
                 3556777777777777777765.45555555556677777887777665 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0001
                 HHHHHHHHTTEEEEEEEHHHHHHT-----SSS--SEEEE---...SS-S----HHHHHHHHTT--TT--EE---H.............HHHHHHHHHTE CS
      DRE2_N  19 eaikklydsrsstdlqmlDRlaaglvsLpastYdlvllltde.eeeeeelliprkliqkivkaLkpgGklkgqdgkake.........aqkleallaGl 107
                 ea+++  +  ++ d  +l++l   + s++  +Ydl + l d+ +  e+    ++ +++++v ++ p G+ +  ++ +++         ++k  a++ ++
  KKY14617.1 380 EALQNEDT-MTNEDSNLLNKLLVTICSMEPPNYDLAMNLLDTlH--ERTPTLESGTVAALVGLMLPRGEYQEIHDLLEShypvfskeeREKPRAVVVDY 475
                 44443333.6699*****************************42..34455557999***********9998888766577777766655555666666 PP

                 EE CS
      DRE2_N 108 vi 109
                 ++
  KKY14617.1 476 IM 477
                 65 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.89
                 HHHHTSHHHHHHHHHHHHTTEEEEEEEHHHHHHT-----SSS- CS
      DRE2_N   9 PsvathpekleaikklydsrsstdlqmlDRlaaglvsLpastY 51 
                 Ps++t +  ++a  k +++ +   +q + R+++g+ +++++ Y
  KKY14617.1 609 PSYTTFAVVFRACEKFAPNGQPFAMQFMSRIKSGSFEITKEIY 651
                 777777777788888888788899999********99999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 4455.06
//
Query:       KKY14618.1  [L=812]
Description: hypothetical protein UCRPC4_g06665 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.4   0.0        0.4   10.7   0.0    1.8  1  FokI_C    Restriction endonuclease FokI, catalytic domain


Domain annotation for each model (and alignments):
>> FokI_C  Restriction endonuclease FokI, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   2.2e-05       0.4      31      70 ..     316     355 ..     312     375 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.2e-05
      FokI_C  31 felGkklGfvgeaGftslpqelliqglaeaeeekekkklk 70 
                 f lGk  G+    Gf s+ qel i    ++++  ++++l 
  KKY14618.1 316 FSLGKGWGWLKLCGFNSFTQELCIDNAVTSDDPANRSRLS 355
                 99******************************99999774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.49
# Mc/sec: 4938.42
//
Query:       KKY14619.1  [L=770]
Description: hypothetical protein UCRPC4_g06666 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-33  114.1   0.8    4.6e-11   42.7   0.1    3.6  3  H_lectin  H-type lectin domain


Domain annotation for each model (and alignments):
>> H_lectin  H-type lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.8e-12   3.3e-08       3      65 ..     520     582 ..     518     583 .. 0.97
   2 !   42.7   0.1   2.6e-15   4.6e-11       3      67 .]     612     675 ..     610     675 .. 0.94
   3 !   34.3   0.0   1.1e-12   1.9e-08       3      67 .]     701     769 ..     699     769 .. 0.91

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.8e-12
                 EEE-SS--SS--EEEEEEEEEEEBTT.EEEEEEEEES--SSEEEEEEEE-TT-EEEEEEEEEE CS
    H_lectin   3 tvtFskpFssiPkVflslnkidmdkgqnlrvsvqatnitttgFtikfvtwgdtklyslrvsWl 65 
                 +v F+ pF++ P  + +l++id+  ++ +rv ++ +n+t+++F++  +  g +  y++  sW+
  KKY14619.1 520 PVAFDPPFEKQPRMISGLSHIDTPASEAVRVAISHENVTNSHFEAFARAFGGSFAYGIASSWM 582
                 799***********************************************************8 PP

  == domain 2  score: 42.7 bits;  conditional E-value: 2.6e-15
                 EEE-SS--SS--EEEEEEEEEEEBTT.EEE.EEEEEES--SSEEEEEEEE-TT-EEEEEEEEEEEE CS
    H_lectin   3 tvtFskpFssiPkVflslnkidmdkgqnlr.vsvqatnitttgFtikfvtwgdtklyslrvsWlAf 67 
                 +vtFsk+F++ P ++++l +i+++kg  +  + ++at i ++ F++k++tw+  +l ++rv WlA+
  KKY14619.1 612 RVTFSKKFTRKPIILVWLFEINLTKG--WHsITTDATTIREDAFDLKISTWAGRNLDGARVGWLAY 675
                 7*********************9885..444**********************************6 PP

  == domain 3  score: 34.3 bits;  conditional E-value: 1.1e-12
                 EEE-S.S--SS--EEEEEEEEEEEBTT.EEEEEEEEES--SSEEEEEEEE-T...T-EEEEEEEEEEEE CS
    H_lectin   3 tvtFs.kpFssiPkVflslnkidmdkgqnlrvsvqatnitttgFtikfvtwg...dtklyslrvsWlAf 67 
                 t +F+  pFs+ P  f++l+ +d+  +qnlr+ + ++++ttt+++ +  tw+   + ++++  + W+A+
  KKY14619.1 701 TMNFEgSPFSKQPATFIALSLMDCGDDQNLRFACGVDSVTTTSMNYHCGTWAaagSDNMHQTEYVWVAM 769
                 6788889********************************************656678899999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1785  (0.0995594); expected 358.6 (0.02)
Passed bias filter:                      705  (0.0393218); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.49
# Mc/sec: 4710.15
//
Query:       KKY14620.1  [L=432]
Description: hypothetical protein UCRPC4_g06667 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.54
# Mc/sec: 2418.00
//
Query:       KKY14621.1  [L=357]
Description: hypothetical protein UCRPC4_g06668 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-05   24.3  13.4    6.8e-05   23.4  13.4    1.4  1  APG6_N          Apg6 coiled-coil region
  ------ inclusion threshold ------
      0.013   15.2   8.7      0.021   14.5   8.7    1.3  1  DUF2968         Protein of unknown function (DUF2968)
      0.077   13.2   4.0        4.4    7.6   0.2    2.7  2  HALZ            Homeobox associated leucine zipper
      0.085   12.9  13.6       0.16   12.0   7.5    2.3  2  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
      0.095   12.2  11.9       0.14   11.6  11.0    1.6  1  Golgin_A5       Golgin subfamily A member 5
       0.11   12.0  10.3       0.54    9.7   7.3    2.4  2  HMMR_N          Hyaluronan mediated motility receptor N-termi
       0.12   12.2   2.6       0.26   11.0   2.6    1.6  1  Lectin_N        Hepatic lectin, N-terminal domain
       0.14   12.0   4.4        8.5    6.3   0.0    3.5  3  Shugoshin_N     Shugoshin N-terminal coiled-coil region
       0.18   12.1   7.7        0.3   11.3   6.4    2.0  1  Seryl_tRNA_N    Seryl-tRNA synthetase N-terminal domain
       0.18   11.1   4.1       0.27   10.5   4.1    1.3  1  DUF4407         Domain of unknown function (DUF4407)
        0.2   11.8  10.8        1.2    9.2   9.4    2.2  2  UPF0242         Uncharacterised protein family (UPF0242) N-te
        0.2   10.1   1.2       0.27    9.7   1.2    1.1  1  FUSC            Fusaric acid resistance protein family
       0.31   11.1   9.6       0.94    9.6   9.1    2.0  1  Cep57_CLD_2     Centrosome localisation domain of PPC89
       0.32   11.0   5.5        2.6    8.1   1.7    3.0  2  DUF2205         Short coiled-coil protein
       0.38   10.0   3.5       0.73    9.0   3.5    1.4  1  TMPIT           TMPIT-like protein
       0.51   10.6   6.5        4.9    7.4   5.6    2.6  1  JIP_LZII        JNK-interacting protein  leucine zipper II
       0.52   10.0  11.0      0.084   12.6   6.4    1.9  2  SHE3            SWI5-dependent HO expression protein 3
       0.65    9.2   8.4       0.85    8.9   7.3    1.7  2  DUF3450         Protein of unknown function (DUF3450)
       0.89    9.8  13.7        8.9    6.6  13.7    2.2  1  THOC7           Tho complex subunit 7
        1.3    9.4   7.8        0.2   12.0   2.1    2.5  3  CLZ             C-terminal leucine zipper domain of cyclic nu
        1.5    9.2  11.1         14    6.0  10.9    2.4  2  Uso1_p115_C     Uso1 / p115 like vesicle tethering protein, C
        1.5    8.8   9.9        4.4    7.3   9.9    1.8  1  FlxA            FlxA-like protein
        2.9    8.1  10.7        1.7    8.9   1.1    3.0  3  Cnn_1N          Centrosomin N-terminal motif 1
        3.1    7.4  14.0          5    6.7  11.2    2.4  2  PI3K_P85_iSH2   Phosphatidylinositol 3-kinase regulatory subu
        4.7    7.7  15.5       0.61   10.6  10.1    2.4  1  ZapB            Cell division protein ZapB
        9.4    6.4   9.7        5.9    7.0   0.1    3.0  2  PilO            Pilus assembly protein, PilO


Domain annotation for each model (and alignments):
>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4  13.4   9.9e-08   6.8e-05      22     128 ..       8     122 ..       5     134 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 9.9e-08
      APG6_N  22 ekerdaYeeflkklkkekkeeekqdeeleeleee.........leklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqle 111
                 ++e ++Y++ ++++++ + e+  + +++++l  e         l k e++e++ ++e   l ++ +++ +e+ +l++e+++ ++ ee+ +re+ el+ e
  KKY14621.1   8 DEEYKEYKRLMQRIENATIES-PDSSDMNNLLTEvgktifeevLPKFEAKESSIIQENIGLRANLQSVTNERDKLQNECQQAKASEEKLVREQEELRAE 105
                 6899***********995554.45777777777777777777777788888888888888888888888888888888888888888888888888888 PP

      APG6_N 112 lleleeeldsleaqyeh 128
                   ++ ++ +  +aq++ 
  KKY14621.1 106 RDSFCDQAQEFQAQLQA 122
                 88888888888888765 PP

>> DUF2968  Protein of unknown function (DUF2968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   8.7     3e-05     0.021     115     178 ..      71     134 ..      50     136 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3e-05
     DUF2968 115 iaasearaerLqadlavarqQeqavaerQkqarkeaaaLeaqreaaqaqlralqrqirqLqaqq 178
                 ++   ++  +Lq++ + a++ e+++ ++Q+++r+e ++  +q ++ qaql+al  ++++L+a+ 
  KKY14621.1  71 LQSVTNERDKLQNECQQAKASEEKLVREQEELRAERDSFCDQAQEFQAQLQALTARMSTLEAEL 134
                 6667788899***************************************************986 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.5      0.02        13      17      39 ..      67      89 ..      66      93 .. 0.86
   2 ?    7.6   0.2    0.0063       4.4      15      42 ..     100     127 ..      93     128 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.02
        HALZ 17 LksdydsLkkenekLkaelqeLk 39
                L+++ +s+ +e++kL++e q+ k
  KKY14621.1 67 LRANLQSVTNERDKLQNECQQAK 89
                789999************99755 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0063
        HALZ  15 daLksdydsLkkenekLkaelqeLkekl 42 
                 + L+++ ds  ++ ++ +a+lq L++++
  KKY14621.1 100 EELRAERDSFCDQAQEFQAQLQALTARM 127
                 7899*********************987 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.2   0.00082      0.57      53      93 ..      49      89 ..       6      91 .. 0.72
   2 ?   12.0   7.5   0.00023      0.16      28      81 ..      80     133 ..      79     150 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00082
  CENP-F_leu_zip 53 evetlkeeieelaeelreleldLvalrsekeeLekelqkkq 93
                     + +++++   + +e   l+++L+++++e+++L++e+q+ +
      KKY14621.1 49 VLPKFEAKESSIIQENIGLRANLQSVTNERDKLQNECQQAK 89
                    3456889999999999**********************976 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00023
  CENP-F_leu_zip  28 nLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrse 81 
                     +L+ e ++++++ ek+++e E+ +ae  ++ ++ +e +++l+ l++ +++l  e
      KKY14621.1  80 KLQNECQQAKASEEKLVREQEELRAERDSFCDQAQEFQAQLQALTARMSTLEAE 133
                     799**************************9999999999999999999999866 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  11.0    0.0002      0.14      93     168 ..      72     147 ..      46     156 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0002
   Golgin_A5  93 eqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsrikdrekeieklrnqlttkslssssesel 168
                 + +++ +++l++e ++ ++ e++l r +eelr+ ++  + + +++q++++   + ++ l+++lt++ l +ss+ ++
  KKY14621.1  72 QSVTNERDKLQNECQQAKASEEKLVREQEELRAERDSFCDQAQEFQAQLQALTARMSTLEAELTSQMLPESSRRDS 147
                 5566778899999999999999999999999999999999999999999999999999999999999999998775 PP

>> HMMR_N  Hyaluronan mediated motility receptor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   7.3   0.00079      0.54     206     300 ..      51     138 ..      32     152 .. 0.82
   2 ?    2.5   0.0      0.12        82     228     268 ..     230     273 ..     219     286 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00079
      HMMR_N 206 aqLkeklvslekekieekseteklleyieelsnvseqlekykldiaqleellkekndeiesLkssLeekeqelskqvkdlnekckllekekeelv 300
                  + + k +s+ +e+i  +++ +  +++ ++l+n+ +q+       +++ee l  +++e+   + s  +++qe+++q + l++++++le+e+  ++
  KKY14621.1  51 PKFEAKESSIIQENIGLRANLQSVTNERDKLQNECQQA-------KASEEKLVREQEELRAERDSFCDQAQEFQAQLQALTARMSTLEAELTSQM 138
                 56778888889999999999999999999999999998.......88999999999999999999999999999999999999999999876543 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.12
      HMMR_N 228 klleyieelsnvseql.ekykldiaqleellke..kndeiesLk 268
                 + +ey++  s ++  + eky+ d++ l+++++e  kn+e++s +
  KKY14621.1 230 EKVEYNTDESWARFIVpEKYRNDVQPLKDIFEEhmKNKELVSQR 273
                 556666666666666679*************9844677776655 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.6   0.00038      0.26      73     131 .]      69     130 ..      55     130 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00038
    Lectin_N  73 aeiqalssqggsls...ekvtsleaklekkqqdlkadhselllhvkqlvkdLrtLsCqlaal 131
                 a++q+++ + ++l+   ++ +  e kl ++q++l+a+  ++ ++ ++++++L++L+  + +l
  KKY14621.1  69 ANLQSVTNERDKLQnecQQAKASEEKLVREQEELRAERDSFCDQAQEFQAQLQALTARMSTL 130
                 56666666666665111455667889999***************************999875 PP

>> Shugoshin_N  Shugoshin N-terminal coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.012       8.5      27      44 ..      54      71 ..      50      72 .. 0.85
   2 ?    3.2   0.2      0.12        84      31      43 ..      93     105 ..      84     106 .. 0.87
   3 ?    2.1   0.1      0.27   1.8e+02      17      31 ..     121     135 ..     119     136 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.012
  Shugoshin_N 27 ekevseLlsENlnLReli 44
                 e++ s++++EN+ LR+++
   KKY14621.1 54 EAKESSIIQENIGLRANL 71
                 777799*********975 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.12
  Shugoshin_N  31 seLlsENlnLRel 43 
                  ++L++E+ +LR++
   KKY14621.1  93 EKLVREQEELRAE 105
                  69*********97 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.27
  Shugoshin_N  17 salslkirelekevs 31 
                  +al++++++le+e++
   KKY14621.1 121 QALTARMSTLEAELT 135
                  579999999999987 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   6.4   0.00044       0.3      37     100 ..      63     130 ..      47     139 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
                   HHHHHHHHHHHHHHHHHHHHHHCCCCCCTT....S-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  37 krrelqveleelqaerNelskeIgkakkkk....edaeeliaevkelkeelkaleaelkeleaelekl 100
                   +   l++ l+++ +er +l++e ++ak+++     + eel+ae ++  ++ ++ +a+l++l+a++ +l
    KKY14621.1  63 ENIGLRANLQSVTNERDKLQNECQQAKASEeklvREQEELRAERDSFCDQAQEFQAQLQALTARMSTL 130
                   44555666666666666666666666666655665556666666666666666666666666555543 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   4.1    0.0004      0.27     131     211 ..      53     137 ..       6     201 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0004
     DUF4407 131 ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk...gtgttgvaG...kgpaakekkaqldaaqaelaelkakldatar 211
                 ++a+ + + +++  l+a++++  +++d+l++e q+    +     ++++ +a      + a+e +aql+a++a++ +l+a+l+  ++
  KKY14621.1  53 FEAKESSIIQENIGLRANLQSVTNERDKLQNECQQAKASEEklvREQEELRAErdsFCDQAQEFQAQLQALTARMSTLEAELT--SQ 137
                 33333333333334444444444444444444433322222333111111111000223344455666666666666666633..22 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   9.4    0.0018       1.2      70     161 ..      53     137 ..       8     150 .. 0.75
   2 ?    1.8   0.0      0.33   2.3e+02      81     116 ..     237     281 ..     200     296 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0018
     UPF0242  70 leekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekqellqeyqetieeq 161
                 +e+ke+ + +++      + +l+ +++e ++L++e ++ +   e+l +e+++L+ +       f ++ +e ++qL+  + +++++++++++q
  KKY14621.1  53 FEAKESSIIQEN---IGLRANLQSVTNERDKLQNECQQAKASEEKLVREQEELRAERDS----FCDQAQEFQAQLQALTARMSTLEAELTSQ 137
                 455555555544...4455699999999*************************976665....66666666666666666666666666555 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.33
     UPF0242  81 d.........eglktkeealeelqeeeeeLkeeldakeeelerlk 116
                 d         e++++  + l++  ee+++ ke ++++   ++ l+
  KKY14621.1 237 DeswarfivpEKYRNDVQPLKDIFEEHMKNKELVSQRRYISRALN 281
                 1334555555779999999*********99999999988777776 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.2   0.00039      0.27     266     331 ..      44     135 ..      10     160 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00039
        FUSC 266 l.....................eaaaaaealeaalaalrarlralrraleadadtaalllarlaellaelaqllaslraleaaiaa.....a 331
                                         +a  +  + +++ l+ +++++++++e+    +++l a+ +++++++++ +a+l+al+a+ ++      
  KKY14621.1  44 TifeevlpkfeakessiiqeniGLRANLQSVTNERDKLQNECQQAKASEEKLVREQEELRAERDSFCDQAQEFQAQLQALTARMSTleaelT 135
                 455555555555555555555544556788899999*********************************************99998554440 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   9.1    0.0014      0.94       7      64 ..      80     137 ..      74     140 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0014
  Cep57_CLD_2   7 tLqnrLdsltrklqvheeelkrLnkERdsalrqLgvAyeelneLkaevealrkELkeq 64 
                   Lqn+  ++    ++   e ++L++ERds+  q ++    l+ L+a+  +l+ EL +q
   KKY14621.1  80 KLQNECQQAKASEEKLVREQEELRAERDSFCDQAQEFQAQLQALTARMSTLEAELTSQ 137
                  688888888888888889************************************9887 PP

>> DUF2205  Short coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1      0.14        98      37      54 ..      69      86 ..      59      90 .. 0.86
   2 ?    8.1   1.7    0.0037       2.6      15      41 ..     103     129 ..      86     135 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.14
     DUF2205 37 ervdeVkeehdKLesenr 54
                +  ++V +e dKL++e +
  KKY14621.1 69 ANLQSVTNERDKLQNECQ 86
                56789**********976 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0037
     DUF2205  15 rearerLqqqakeLqssLqaLaervde 41 
                 r +r+    qa+e+q+ LqaL +r   
  KKY14621.1 103 RAERDSFCDQAQEFQAQLQALTARMST 129
                 345677777*************99865 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.5    0.0011      0.73       2      61 ..      76     135 ..      70     157 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0011
       TMPIT   2 eeweelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk 61 
                 +e ++l++e+++ +++++++ ++ eel +  ++++ ++++ + +l++l++++++l+++++
  KKY14621.1  76 NERDKLQNECQQAKASEEKLVREQEELRAERDSFCDQAQEFQAQLQALTARMSTLEAELT 135
                 577889999999999999999999999999999999999999999999999999888765 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   5.6    0.0071       4.9       2      70 ..      66     134 ..      65     135 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0071
    JIP_LZII   2 GmgkevenLikENteLletknaLnvvkddLIarvdeLtsereiLreEleslqkakerlesrikelEeel 70 
                 G++ +++++ +E  +L++         + L+ + +eL  er+++ +  ++ q+++++l  r++ lE+el
  KKY14621.1  66 GLRANLQSVTNERDKLQNECQQAKASEEKLVREQEELRAERDSFCDQAQEFQAQLQALTARMSTLEAEL 134
                 77888888999999999888888899999**************************************98 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   6.4   0.00012     0.084      74     153 ..      63     138 ..      54     148 .. 0.87
   2 ?   -2.2   0.1       4.1   2.8e+03     129     150 ..     247     268 ..     246     284 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00012
                 HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS CS
        SHE3  74 elselkesveelklekkqlkkrlenssaseteleeelerlkvqYdalvdsqkeYkehYqqeieeLkesleklklenekql 153
                 e+  l+ + ++++ e+++l++++++ +ase++l  e e+l+++ d+  d  +e+    q +++ L  ++ +l+ e + q+
  KKY14621.1  63 ENIGLRANLQSVTNERDKLQNECQQAKASEEKLVREQEELRAERDSFCDQAQEF----QAQLQALTARMSTLEAELTSQM 138
                 667799999****************************************99875....6788888888888888887665 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.1
                 HHHHHHHHHHHHHHHHHHHHHH CS
        SHE3 129 ehYqqeieeLkesleklklene 150
                 e+Y+++++ Lk  +e+  +++e
  KKY14621.1 247 EKYRNDVQPLKDIFEEHMKNKE 268
                 5788888888887777766655 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   7.3    0.0012      0.85      19      72 ..      79     132 ..      47     146 .. 0.43
   2 ?   -3.7   0.0       8.4   5.8e+03     205     229 ..     236     262 ..     232     265 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0012
     DUF3450  19 dqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqler 72 
                 d++++e ++a a++++  +++++l  e+++  ++ ++ +++l++l++  + le+
  KKY14621.1  79 DKLQNECQQAKASEEKLVREQEELRAERDSFCDQAQEFQAQLQALTARMSTLEA 132
                 222222222222222222222222222222222222222222222222222222 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 8.4
     DUF3450 205 etkqWq..aldssyrseirkairiark 229
                 ++++W    ++++yr++++   +i ++
  KKY14621.1 236 TDESWArfIVPEKYRNDVQPLKDIFEE 262
                 566888666699999999888777665 PP

>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  13.7     0.013       8.9      12     106 ..      10     107 ..       4     139 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.013
       THOC7  12 eerplkrltkrllklltsla.......esteeeleqlkedllldfaafelsierlqllakanerereryeaekeeieseieavreeieelkaqLeeara 103
                 e +++krl++r+ + + +         +   e  +   e++l +f+a e+si + +  ++an + + +   e++++++e+++++++ e+l  + ee ra
  KKY14621.1  10 EYKEYKRLMQRIENATIE-SpdssdmnNLLTEVGKTIFEEVLPKFEAKESSIIQENIGLRANLQSVTN---ERDKLQNECQQAKASEEKLVREQEELRA 104
                 88999******9983333.3689999856666777778888888888888888888888888777666...6677888888888888888888888777 PP

       THOC7 104 tra 106
                 +r+
  KKY14621.1 105 ERD 107
                 775 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       5.5   3.8e+03      58      67 ..      14      23 ..       7      25 .. 0.66
   2 ?   -1.2   0.1       3.8   2.6e+03      36      58 ..      67      89 ..      46      97 .. 0.65
   3 ?   12.0   2.1    0.0003       0.2      18      57 ..      98     137 ..      90     139 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 5.5
         CLZ 58 qrkLkqRitk 67
                 ++L+qRi++
  KKY14621.1 14 YKRLMQRIEN 23
                4577888875 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.8
         CLZ 36 LessLeaLqtrlarLlaeyessq 58
                L ++L++ ++   +L +e ++++
  KKY14621.1 67 LRANLQSVTNERDKLQNECQQAK 89
                66666666666666666666544 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.0003
         CLZ  18 eaakagaeqkeleekverLessLeaLqtrlarLlaeyess 57 
                 e ++ +ae++++ +++++++++L+aL+ r+  L ae++s 
  KKY14621.1  98 EQEELRAERDSFCDQAQEFQAQLQALTARMSTLEAELTSQ 137
                 3478889******************************985 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  10.9     0.021        14       5      81 ..      52     133 ..      48     139 .. 0.66
   2 ?    5.7   1.7     0.026        18       3      38 ..      99     135 ..      97     156 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.021
  Uso1_p115_C   5 eleseaaslkdeneklkaelqslskalesleqk..eakkaaes...qakeleaenkklekeleklraelkeekekekekqkE 81 
                  + e + +s+ +en  l a+lqs +++  +l+++  +ak++ e+   +++el+ae+++  ++ ++ +a+l++   + +  ++E
   KKY14621.1  52 KFEAKESSIIQENIGLRANLQSVTNERDKLQNEcqQAKASEEKlvrEQEELRAERDSFCDQAQEFQAQLQALTARMSTLEAE 133
                  679999*************************995422222222111334444444444447777788877766666544555 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.026
  Uso1_p115_C   3 aseleseaaslkdeneklkaelqslskalesleqk.e 38 
                  ++el  e+ s+ d++++ +a+lq+l+ ++  le +  
   KKY14621.1  99 QEELRAERDSFCDQAQEFQAQLQALTARMSTLEAElT 135
                  7899999999******************999998852 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   9.9    0.0064       4.4      13      75 ..      72     137 ..      55     148 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0064
        FlxA  13 sgsasqiasLqkQiknlqkqLkelses.deltkeekk...kqqqliqaQIqqlqaQIaqlqqqqaek 75 
                 ++ +++  +Lq++ ++++ + ++l  + +el +e       q+q+ qaQ+q+l a +  l+++ +++
  KKY14621.1  72 QSVTNERDKLQNECQQAKASEEKLVREqEELRAER-DsfcDQAQEFQAQLQALTARMSTLEAELTSQ 137
                 34445555666666666666655555534444443.3699****************99999998887 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       3.9   2.7e+03      56      72 ..       8      24 ..       5      25 .. 0.75
   2 ?    8.9   1.1    0.0024       1.7      30      70 ..      50      89 ..      44      92 .. 0.84
   3 ?    4.9   1.3     0.043        30      35      71 ..      92     132 ..      85     134 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 3.9
      Cnn_1N 56 qkelkekkkllreaeka 72
                  e ke+k+l+++ e+a
  KKY14621.1  8 DEEYKEYKRLMQRIENA 24
                67888999999887765 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0024
      Cnn_1N 30 leklseeqkeellkenielkveveslqkelkekkkllreae 70
                l k +  +  ++++eni l+ +++s ++e ++++++ ++a+
  KKY14621.1 50 LPKFEA-KESSIIQENIGLRANLQSVTNERDKLQNECQQAK 89
                555555.7789************************999986 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.043
      Cnn_1N  35 e....eqkeellkenielkveveslqkelkekkkllreaek 71 
                 e    +++eel +e+   +++ ++ q +l++++ ++  +e 
  KKY14621.1  92 EeklvREQEELRAERDSFCDQAQEFQAQLQALTARMSTLEA 132
                 23455677888888888888888888888888777777665 PP

>> PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  11.2    0.0073         5      33     155 ..       7     129 ..       2     135 .. 0.84
   2 ?   -2.0   0.0       3.4   2.4e+03      62      74 ..     258     270 ..     251     288 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0073
  PI3K_P85_iSH2  33 ydqlkeeynkiseeiqlkrqaleaFneaikmFeeqiklq.ekfskeaqehEieklqenleqlksrlkelhsskekLeedlkqqkeeereleReina 127
                     d+ ++ey+++++ i+         +++++++ e  k++ e++  + + +E + +qen+  l++ l+++ ++++kL+++ +q k++e +l Re  +
     KKY14621.1   7 IDEEYKEYKRLMQRIENATIESPDSSDMNNLLTEVGKTIfEEVLPKFEAKESSIIQENIG-LRANLQSVTNERDKLQNECQQAKASEEKLVREQEE 101
                    6778888888888888888888888888888888777655888888899*******9995.89********************************* PP

  PI3K_P85_iSH2 128 lkpellqLqkrkdkylewLktkgvtqdk 155
                    l+ e  + + +  +++ +L+    + + 
     KKY14621.1 102 LRAERDSFCDQAQEFQAQLQALTARMST 129
                    ****999999999999999876666555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.4
  PI3K_P85_iSH2  62 kmFeeqiklqekf 74 
                     +Fee++k +e +
     KKY14621.1 258 DIFEEHMKNKELV 270
                    4677777666543 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  10.1   0.00089      0.61      14      69 ..      72     127 ..      47     135 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00089
        ZapB  14 qkaidtitlLqmeieeLkeeneelkeenreleeeneqlkeereawqerlkkLLgkl 69 
                 q+  ++ ++Lq+e ++ k+  e+l +e++el++e + + ++ +++q+ l++L +++
  KKY14621.1  72 QSVTNERDKLQNECQQAKASEEKLVREQEELRAERDSFCDQAQEFQAQLQALTARM 127
                 6666777899*********************9666666666677777666666665 PP

>> PilO  Pilus assembly protein, PilO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0085       5.9      23      62 ..       5      44 ..       2      65 .. 0.88
   2 ?   -1.1   6.4       2.8   1.9e+03       8      49 ..      99     142 ..      62     150 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0085
        PilO 23 anLeklkkqleeleeeleellkqLPskkeipsLLedinqa 62
                 n+++  k++++l +++e++  + P+++++++LL+++ ++
  KKY14621.1  5 INIDEEYKEYKRLMQRIENATIESPDSSDMNNLLTEVGKT 44
                578888899***************************9876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.8
        PilO   8 ekeLkke...f.eekkekaanLeklkkqleeleeeleellkqLPsk 49 
                 ++eL++e   f ++++e  a+L++l +++  le+el++  ++LP++
  KKY14621.1  99 QEELRAErdsFcDQAQEFQAQLQALTARMSTLEAELTS--QMLPES 142
                 23333220002022233334455555555555554443..345555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1546  (0.086229); expected 358.6 (0.02)
Passed bias filter:                      759  (0.0423336); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.53
# Mc/sec: 2032.66
//
Query:       KKY14622.1  [L=453]
Description: hypothetical protein UCRPC4_g06669 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00072   19.6   2.6     0.0018   18.4   2.6    1.7  1  F_actin_bind  F-actin binding
     0.0076   16.3   0.9      0.014   15.4   0.2    1.7  2  DUF489        Protein of unknown function (DUF489)
  ------ inclusion threshold ------
      0.027   14.2   0.8      0.059   13.1   0.8    1.6  1  Baculo_p24    Baculovirus P24 capsid protein
      0.028   15.2   5.3        1.5    9.6   0.6    3.2  3  Occludin_ELL  Occludin homology domain
       0.17   12.4   2.8       0.47   11.1   2.8    1.7  1  DUF5344       Family of unknown function (DUF5344)
       0.24   11.6   3.2        1.7    8.9   0.1    2.6  2  Spc24         Spc24 subunit of Ndc80
       0.42   11.1   3.5         11    6.6   0.3    3.8  4  CRR7          Protein CHLORORESPIRATORY REDUCTION 7
       0.49   10.2   6.3       0.47   10.3   4.3    1.8  2  PCRF          PCRF domain
          2    8.8   7.4        3.6    8.0   2.2    2.8  2  BLOC1_2       Biogenesis of lysosome-related organelles compl


Domain annotation for each model (and alignments):
>> F_actin_bind  F-actin binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   2.6   8.8e-07    0.0018       6      97 ..      65     156 ..      60     160 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.8e-07
  F_actin_bind   6 esiLelvelleaalsnlkesvsssqesaqllqlldkvenlhssCsgyvdsipp.hakFaFrellsrLesqsreLr.savgsknssenekllqdl 97 
                   e+ L+ +e++e+++s+lk +++s ++ +q  q++ +   +  +  +y ++ ++ +   +F+el+sr e   reL+  + ++k+++++  l q++
    KKY14622.1  65 EACLQEIEDVEKKISQLKDKLGSMSTAEQAKQVIKERYLFIPELFEYSEEFAQtQG--QFKELCSRQEEIRRELQaLSLAEKQAKDAASLQQNV 156
                   678999********************************************877355..69***************7666677777776666665 PP

>> DUF489  Protein of unknown function (DUF489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   7.1e-06     0.014      29     122 ..      48     146 ..      39     178 .. 0.82
   2 ?   -2.5   0.0       2.1   4.2e+03      44      81 ..     248     284 ..     216     297 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.1e-06
                 HHHHHHHHHH--S-SSHHHHTTSGGGGHHHHHHHHHHHHT--SCHHH...HHHHHHH..HHHHHHHHHHHSTTHHHHHHHHHHTTHHHHTTS-TTSHHH CS
      DUF489  29 aletllkslletdpestedvygglanlklGletlleqlekekkkkda...eltryal..sllalerkLsknkealaklgerieqierqlehfdllhenv 122
                 +l++l++++l+ +++++e+  ++++++++ +++l++ l++ +++++a      ry++  +l++ ++++++++  +++l +r+e+i+r+l+  +l +++ 
  KKY14622.1  48 SLRALIQAMLANRESEAEACLQEIEDVEKKISQLKDKLGSMSTAEQAkqvIKERYLFipELFEYSEEFAQTQGQFKELCSRQEEIRRELQALSLAEKQA 146
                 57899**********************************999865553223367765448****************************99888776664 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.1
                 SHHHHTTSGGGGHHHHHHHHHHHHT--SCHHHHHHHHH CS
      DUF489  44 stedvygglanlklGletlleqlekekkkkdaeltrya 81 
                 + e+v+  la +++++e ll++  +++k+  + ++r++
  KKY14622.1 248 TEEAVFT-LATIEVAVELLLKSNYNSSKEIALAIVRLI 284
                 4556664.566666666666666666665555555554 PP

>> Baculo_p24  Baculovirus P24 capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.8     3e-05     0.059      75     133 ..      32     102 ..      17     158 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3e-05
  Baculo_p24  75 ssynlsds.ahppeyyvlkqLvrDLlvGaqse...avdplkdiktqlctlqecleesnvlvn........s 133
                 s y+l++s a+  e+ +l+ L++ +l+++ se     ++++d+++++ +l+++l + +++ +        +
  KKY14622.1  32 SRYKLEKSrANLDEWPSLRALIQAMLANRESEaeaCLQEIEDVEKKISQLKDKLGSMSTAEQakqvikerY 102
                 5688877767889******************9666677788888888888888886554333323333330 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.3    0.0091        18      26      61 ..      66     101 ..      59     105 .. 0.82
   2 ?    9.6   0.6   0.00074       1.5      12      53 ..     110     151 ..     106     177 .. 0.86
   3 ?   -1.9   0.0       2.9   5.7e+03      32      60 ..     172     200 ..     165     215 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0091
  Occludin_ELL  26 elhaeleevskkfseLerelkelkegskeykkieee 61 
                   ++ +e+e+v+kk+s+L+++l ++++ ++  + i+e+
    KKY14622.1  66 ACLQEIEDVEKKISQLKDKLGSMSTAEQAKQVIKER 101
                   6789999***********999998888777766654 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00074
  Occludin_ELL  12 rYkaeFnkeYkeYkelhaeleevskkfseLerelkelkegsk 53 
                   +Y +eF ++  ++kel+++ ee++++++ L+   k++k+  +
    KKY14622.1 110 EYSEEFAQTQGQFKELCSRQEEIRRELQALSLAEKQAKDAAS 151
                   7*****************************977777766554 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.9
  Occludin_ELL  32 eevskkfseLerelkelkegskeykkiee 60 
                   e++++k+  L+ ++k++ ++s+++ ++++
    KKY14622.1 172 EHLWQKVFSLQGKWKAMLQRSQQWLTTIK 200
                   67788888999999998888887766555 PP

>> DUF5344  Family of unknown function (DUF5344)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.8   0.00024      0.47       9      84 ..      72     146 ..      69     149 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00024
     DUF5344   9 aeVeqkLselktaaeelktsipetisgknsldvvekineleeeleellkaYktlllknvedtesaVdslkeaDeal 84 
                 ++Ve+k+s+lk+++ +++t  +++   k++  ++ ++ e +ee+ +   ++k+l + + e++++ ++ l+ a++++
  KKY14622.1  72 EDVEKKISQLKDKLGSMSTAEQAKQVIKERYLFIPELFEYSEEFAQTQGQFKELCSRQ-EEIRRELQALSLAEKQA 146
                 89****************9999999999**************************9865.67888888888888876 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.9       0.1     2e+02      17      43 ..      68      94 ..      53     103 .. 0.60
   2 ?    8.9   0.1   0.00086       1.7       6      68 ..     108     165 ..     106     220 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.1
       Spc24 17 eselesleselaelkeeleeleeesee 43
                 +e+e++e++ ++lk++l  +++ +++
  KKY14622.1 68 LQEIEDVEKKISQLKDKLGSMSTAEQA 94
                355566666666666666655555554 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00086
       Spc24   6 kfriakelsdleselesleselaelkeeleeleeeseekeservedetllklklYrsLGiele 68 
                 +f+ ++e  +++ + ++l s+++e ++el+ l+  +++     ++d++ l+ ++   LGi++ 
  KKY14622.1 108 LFEYSEEFAQTQGQFKELCSRQEEIRRELQALSLAEKQ-----AKDAASLQQNVCAGLGIDIA 165
                 68888999999999999999999999999999999888.....77999999999999999994 PP

>> CRR7  Protein CHLORORESPIRATORY REDUCTION 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.3    0.0053        11      29      66 ..      49      86 ..      38      97 .. 0.87
   2 ?    1.6   0.1      0.19   3.9e+02      30      60 ..     119     148 ..     106     163 .. 0.73
   3 ?    0.2   0.0      0.52     1e+03      29      62 ..     314     347 ..     306     363 .. 0.84
   4 ?   -1.9   0.0       2.4   4.7e+03       5      26 ..     346     367 ..     342     387 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0053
                HHHHHHHHHHH-TTTS-HHHHH---HHHHHHHHHHH-- CS
        CRR7 29 llekLkelLekeqdelprdlaklesleeqaqyLldtac 66
                l++ ++++L+++++e  + l+++e++e+++++L d+  
  KKY14622.1 49 LRALIQAMLANRESEAEACLQEIEDVEKKISQLKDKLG 86
                788899***************************98765 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.19
                 HHHHHHHHHH-TTTS-HHHHH---HHHHHHH CS
        CRR7  30 lekLkelLekeqdelprdlaklesleeqaqy 60 
                 + ++kel ++ q+e+ r+l++l+  e+qa+ 
  KKY14622.1 119 QGQFKELCSR-QEEIRRELQALSLAEKQAKD 148
                 4556665555.99999999999999998864 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.52
                 HHHHHHHHHHH-TTTS-HHHHH---HHHHHHHHH CS
        CRR7  29 llekLkelLekeqdelprdlaklesleeqaqyLl 62 
                 l + L  +L++e +   ++l+ ++++ +q ++L+
  KKY14622.1 314 LADYLAGWLHQEMRYAGSKLSVVSKTMAQSRELI 347
                 5678999999999999999999999999998887 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 2.4
                 -S-----EEEEESSS-SEEE-H CS
        CRR7   5 lmyqedtyVvLepnqpEqflta 26 
                 l+y+ d y ++  +++  +l++
  KKY14622.1 346 LIYERDGYSIIPDGENIILLSP 367
                 6666666666555544444443 PP

>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   1.5    0.0052        10      12      89 ..      14      88 ..       5      95 .. 0.67
   2 ?   10.3   4.3   0.00024      0.47      17     110 ..      64     161 ..      48     167 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0052
                T.-GGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT....-S-...-GGGTHHHHHHHHHH..HHHHH CS
        PCRF 12 lsdpevwedqekakklskelaeleeivealeeleealedleeakelleedeela.elaeeeleelekeleeleeelkkl 89
                l+ ++   d e+++k s++  +le+  ++l+e+ ++++ +++   +l +++e + e   +e+e++ek++++l+++l ++
  KKY14622.1 14 LEIQSDYIDFEALNKESESRYKLEKSRANLDEWPSLRALIQA---ML-ANRESEaEACLQEIEDVEKKISQLKDKLGSM 88
                444444445566666666677788888888888888888888...77.3333330344789999999999999888665 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00024
                 GTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT....-S-..-GG......GTHHHHHHHHHH..HHHHH.T-..SSSTTSEEEEEEEE- CS
        PCRF  17 vwedqekakklskelaeleeivealeeleealedleeakelleedeelaelaee......eleelekeleeleeelkkl.LlpkdendeknaileiraG 108
                   +  ++++++ k++++l++ + +++++e+a++ ++e   ++   +el e  ee      +++el ++ ee+++el+ l L  k+ +d+ +   ++ aG
  KKY14622.1  64 AEACLQEIEDVEKKISQLKDKLGSMSTAEQAKQVIKERYLFI---PELFEYSEEfaqtqgQFKELCSRQEEIRRELQALsLAEKQAKDAASLQQNVCAG 159
                 334457888999999999999999999999999999955444...4444443333333337999********999998647777888888888788888 PP

                 SS CS
        PCRF 109 aG 110
                  G
  KKY14622.1 160 LG 161
                 77 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.2    0.0018       3.6      19      79 ..      17      83 ..       5      90 .. 0.79
   2 ?    2.3   0.2       0.1     2e+02      39      73 ..     111     145 ..     103     155 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0018
     BLOC1_2 19 vedyklLeklNeaasekykklkdvaa.....slekkleklnekye.elqpylqqidqiekqvteLee 79
                ++dy   e+lN++++++yk  k++a+     sl++ ++++ +  e e +  lq+i+++ek++++L++
  KKY14622.1 17 QSDYIDFEALNKESESRYKLEKSRANldewpSLRALIQAMLANREsEAEACLQEIEDVEKKISQLKD 83
                56777789999999999986665554444448999999877666669*****************986 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.1
     BLOC1_2  39 lkdvaaslekkleklnekyeelqpylqqidqiekq 73 
                 ++++ a+++ ++++l +++ee++  lq +   ekq
  KKY14622.1 111 YSEEFAQTQGQFKELCSRQEEIRRELQALSLAEKQ 145
                 66778889999999999999999999999887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1315  (0.0733449); expected 358.6 (0.02)
Passed bias filter:                      625  (0.0348597); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.49
# Mc/sec: 2753.93
//
Query:       KKY14623.1  [L=810]
Description: putative beta-xylosidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-66  223.8   4.3    3.5e-66  223.4   4.3    1.1  1  Glyco_hydro_43   Glycosyl hydrolases family 43
    4.3e-32  111.2   0.0    1.5e-31  109.4   0.0    1.8  1  adh_short        short chain dehydrogenase
    1.6e-22   80.3   0.0      4e-21   75.7   0.0    2.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    2.1e-11   43.9   0.0    3.4e-11   43.3   0.0    1.3  1  GH43_C2          Beta xylosidase C-terminal Concanavalin A-li
      0.002   18.8   0.0     0.0043   17.7   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
       0.12   11.9   1.6        8.9    5.8   1.0    2.6  2  Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal dom


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.4   4.3   1.2e-69   3.5e-66       1     288 []     274     565 ..     274     565 .. 0.95

  Alignments for each domain:
  == domain 1  score: 223.4 bits;  conditional E-value: 1.2e-69
                     EESESBCSSEESEEEEEETTCEEEEEEEBTEESEEEEEEESSSSSCEEEEECEESTTTCSTTTEECT...EEEEEEEETTEEEEEEEEEETTCCC CS
  Glyco_hydro_43   1 yrnPvlsgfypDpsilrvgedyYlvtstfewfpglrifhSkdLvnWkqvgrvlerrsqlsmkgknas...WAPeiskhdgkyylyytatkkgeak 92 
                     ++nP++sg +pDp ilrvg++y l++s+fe+fpg +i++SkdL+nW + +++ ++++  ++ g +     WAP +s  +g yyl   ++++ + +
      KKY14623.1 274 IKNPIISGWNPDPAILRVGDEYLLAVSSFEYFPGTPIYKSKDLQNWDLFTHAQTNPKFNNLYGTPTGagvWAPGLSLKNGMYYLTSVTRWTYDPT 368
                     68*******************************************************9999999888889**************98889999999 PP

                     SE..EEEEEESSTT.S--EECEESSCSTSSECEEEEEEETT.SEEEEEEEEEHCC.CSEEEEEEEEEETTTTEEEEEEEEEEECGC.CTCTTBBE CS
  Glyco_hydro_43  93 qg..ifvvtadspe.GpwsdpiklktsgssgiDpslfeddd.GkkYlvwgqwdkr.eghseiylaeldddtlklkgektklikagt.elkglkvt 181
                      +      ++ s +   wsdp++    + +giDpslf+d + G  Ylv ++ +++ ++  +iy+++++       g+  + +++gt  ++ +   
      KKY14623.1 369 ARvwARAYWSSSKDlIHWSDPVWA---EPWGIDPSLFHDPKtGADYLVLMSPNNNvQKLWGIYGCQINLVSGNCIGDY-VSLWNGTiPQNSGTRA 459
                     9955335677777779********...9***********999*********99999999*******************.99*****988889999 PP

                     EEEEEEEETTEEEEEEEESTSSTTEEEEEEEESSTTSGGEEECTCCSEE.T.BTTSTSEEEEEEEEEE-TTSSEEEEEEEESCCTTCCGTTSSEE CS
  Glyco_hydro_43 182 EGPhlykrdgyyYLlaaeggtgseyavvvarsksllgPyewkkknpiltsr.speepiqgpGHaslvetpdgewyivyhagrpegrglytlgRet 275
                     EGP+++++d yyYLl+aeggt+  + +++ars+s+ gP+  +++np++ +   p+  +q++GHa++ve+p+g+wy+ ++a+r+  +g ++lgRet
      KKY14623.1 460 EGPKMFYKDKYYYLLIAEGGTDVLHRATIARSTSPEGPFTPAPNNPLMYNGaYPNLTVQSTGHATFVESPSGDWYASFLARRN-INGSSPLGRET 553
                     **************************************************9999*****************************.*********** PP

                     EEEEEEEETTSEE CS
  Glyco_hydro_43 276 llqrvewkaDGwp 288
                     +l+ v+w+ DGwp
      KKY14623.1 554 FLTTVDWD-DGWP 565
                     ********.***8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   0.0   4.9e-35   1.5e-31       1     192 [.      17     239 ..      17     242 .. 0.86

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 4.9e-35
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESC.HHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S......... CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrs.eekleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi......... 87 
                 k++++tGa+sGI +a+a  l+++ ++vv+ d s  +++e+++++  ++    +a+++++Dvt++ e+++++++a +++g  d++v +AG+         
  KKY14623.1  17 KTAIITGAGSGINLAFAAILLSRKCNVVFSDLSlRSEAEQLIAKHSDQnqTPRAVFVKTDVTSWPELSQMFDAALSEFGDFDLVVPGAGVyephwsnfw 115
                 79***************************665523456666666655547889****************************************999777 PP

                 S--SSGGGCSHHH..HHHHHHHHTHHHHHHHHHHHHHHH.................HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHH CS
   adh_short  88 tgsgpfselseee..wervievNltgvflltravlpaml.................kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakel 167
                 + +g+ ++ +  +    +++++Nlt ++ +t+++l ++                   ++  rIv +sSvag++p+++ + Y+AsK+a+ g++rsla   
  KKY14623.1 116 HPPGSLESKDPIDsgHYALLDINLTHPIRVTQLALSHWThprvipnsayptpakvsPSNPKRIVHISSVAGQMPNFNAPIYGASKFAISGFVRSLAPLD 214
                 3333333333322237788******************9999999**9999998876566679************************************* PP

                 GGGTEEEEEEEESSBSSHHHHHHCT CS
   adh_short 168 aptgirvnavaPGlvdTdmakelre 192
                    g+rv+avaPG+v+T++ +e  e
  KKY14623.1 215 GGLGVRVTAVAPGIVRTPLWTEHPE 239
                 ******************9988766 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.0   1.3e-24     4e-21       1     217 [.      23     267 ..      23     274 .. 0.81

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 1.3e-24
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSE..E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG.......CSS CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgae..v.lecDVtdeeqvealveevvekfgklDilvnnagiapk.......lkg 85 
                   Ga sgI  a A  l ++ ++vv++dl+ ++  ++ +++  ++ ++   v +++DVt+  ++ ++++++ ++fg +D +v  ag+ ++         g
    KKY14623.1  23 GAGSGINLAFAAILLSRKCNVVFSDLSLRSeaEQLIAKHSDQNQTPraVfVKTDVTSWPELSQMFDAALSEFGDFDLVVPGAGVYEPhwsnfwhPPG 119
                   889***********************988864566666666655445447***********************************998877653222 PP

                   -GGGH..-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC...................CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGG CS
  adh_short_C2  86 pflet..sreefdraldvnlyslfllakaalplmkeg...................gsivnlssvgaervvpnynaygaaKaalealtrylAvelgp 161
                   ++++    +++    ld+nl+  +++++ al + ++                     +iv++ssv++++   n  +yga+K a+ +++r+lA   g 
    KKY14623.1 120 SLESKdpIDSGHYALLDINLTHPIRVTQLALSHWTHPrvipnsayptpakvspsnpKRIVHISSVAGQMPNFNAPIYGASKFAISGFVRSLAPLDGG 216
                   2222211346677899**************9944333345555788888888888889*********99999999********************** PP

                   GTEEEEEEEE--BHCTGGGGSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSG CS
  adh_short_C2 162 kgiRvNavspgpikTlaasgikgfdelleelearaplgrlgtpeevaeaalfLasd 217
                    g+Rv av+pg+++T+++++ +     ++ +   +    ++tpeevaea+l  a +
    KKY14623.1 217 LGVRVTAVAPGIVRTPLWTEHP-----EKMVYLDQEQDGWVTPEEVAEAMLRCAEE 267
                   *****************99998.....3334444445667*********9876655 PP

>> GH43_C2  Beta xylosidase C-terminal Concanavalin A-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   1.1e-14   3.4e-11       2     187 ..     592     780 ..     591     784 .. 0.77

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 1.1e-14
     GH43_C2   2 ddFds.dkLglqWqwlrnPkdedwyslterpgyLrLkgre.slsskeapsllarRqqafsftattklefepek..egeeAGLvvyqneyhyyslevtkd 96 
                  dFd+ + L+  W++lr+P+  +++++   ++ L L  +  sl++++ p+ ++r+q + ++t+t+ +e+  ++       G   y +e  +y+++++  
  KKY14623.1 592 IDFDTtTALDKSWYTLRTPY-GKIVEI--DKSGLSLVPNVfSLNDRDVPAAILRKQHSLNMTFTATIEIPETQltSLTSIGVSSYLSEFSHYDIGLRGC 687
                 69998466************.999899..99********88****************99998888888876664478899*****************54 PP

     GH43_C2  97 ekgkrvlrlvkadngeakeelkeekvplqtevkevyLrleveedkakfsysydgkeweeige.eldgtllsdefa.....eggFtGafvGlfatgng 187
                   ++  + +++a + +a++ ++ +++ +++   + +L ++++++ +k+s+++  ++  +i + +   ++ s++ a     +  F G +++lfa+gng
  KKY14623.1 688 -ANSTGMCVYTAYSYNATTIVHDHPLGTPS---SSHLTFVIRAEPLKYSLGFISSQTLDIKNtTWLLEYPSSNLAfaptnWFVFSGPMFALFASGNG 780
                 .44444444444455556666777777777...57899999999999999997777666666322223333333355666889************96 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.4e-06    0.0043       5      76 ..      23      99 ..      21     105 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.4e-06
                     T-TTSHHHHHHHCTS.TSSEEEEEESSHHH.HHH..HHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEEST.GGG CS
  Methyltransf_25  5 GcGtGrltlalakrl.gkakvtgvDiseem.lea..areraeeeglnvefvqgdaedlpfedgsfDlvvssga.lhh 76
                     G+G+G +++ +a  l  k++v+  D+s +   e+  a++  +++ +++ fv+ d++++p+ ++ fD+ +s ++ + +
       KKY14623.1 23 GAGSGINLAFAAILLsRKCNVVFSDLSLRSeAEQliAKHSDQNQTPRAVFVKTDVTSWPELSQMFDAALSEFGdFDL 99
                     89***9999999888559********85441233114444444666***********************98776665 PP

>> Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.013        39     140     175 ..     294     328 ..     277     337 .. 0.71
   2 ?    5.8   1.0     0.003       8.9      14      53 ..     347     388 ..     345     400 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.013
                      EEEEEEEECCTTCCEEEEEEESSSSSEEEECCESEE CS
  Glyco_hydro_32N 140 kwvmvvgaqdkkkgkillYkskdlkewelaselles 175
                      ++ ++v++ +     + +Ykskdl++w+l  + +++
       KKY14623.1 294 EYLLAVSSFE-YFPGTPIYKSKDLQNWDLFTHAQTN 328
                      4444444444.4566789*********988777665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.003
                      EEEECTTEEEEE....EEEETTSSSS-SBEEEEEEESSSSSBEE CS
  Glyco_hydro_32N  14 glvyykgeYhlF....YqynpkgavwgnisWghavSkDlvhWee 53 
                      gl+ ++g+Y+l     + y p++ vw + +W  + SkDl+hW +
       KKY14623.1 347 GLSLKNGMYYLTsvtrWTYDPTARVWARAYW--SSSKDLIHWSD 388
                      67777788877433337899***********..58*******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.51
# Mc/sec: 4748.80
//
Query:       KKY14624.1  [L=416]
Description: hypothetical protein UCRPC4_g06662 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1171  (0.0653132); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.49
# Mc/sec: 2530.91
//
Query:       KKY14625.1  [L=609]
Description: hypothetical protein UCRPC4_g06663 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-50  170.9   0.9    5.9e-50  170.3   0.9    1.2  1  Arylsulfotran_2  Arylsulfotransferase (ASST)
    3.7e-16   59.0   0.5    3.9e-15   55.6   0.5    2.1  1  Arylsulfotrans   Arylsulfotransferase (ASST)
     0.0019   17.6   1.0     0.0036   16.8   1.0    1.3  1  Smim3            Small integral membrane protein 3
  ------ inclusion threshold ------
      0.017   13.8   0.1      0.027   13.2   0.1    1.3  1  EVC2_like        Ellis van Creveld protein 2 like protein
      0.027   14.1   2.3      0.051   13.2   2.3    1.4  1  IL11             Interleukin 11
      0.029   14.1   0.1      0.046   13.5   0.1    1.2  1  TrbL             TrbL/VirB6 plasmid conjugal transfer protein
      0.046   13.3   0.1      0.078   12.5   0.1    1.3  1  CD34_antigen     CD34/Podocalyxin family


Domain annotation for each model (and alignments):
>> Arylsulfotran_2  Arylsulfotransferase (ASST)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.3   0.9   2.3e-53   5.9e-50      29     298 ..      32     291 ..      25     292 .. 0.92

  Alignments for each domain:
  == domain 1  score: 170.3 bits;  conditional E-value: 2.3e-53
  Arylsulfotran_2  29 ildssyeeiwkvtldgdfvtpdsesesyidhHesei.tedgtilvtavnvtqadltsvgge.kdgwvldsliyeidietnevlfrwSalehvde 120
                      ild++ye + +v ++++f       ++   +He+++ ++  t lv     t +d+ts     ++gw+ d+ ++eidie ++v f wS+++h+d 
       KKY14625.1  32 ILDDKYERVKQVHMPKKF-------PK-FNLHEFNViENGSTALVVSSSFTDTDVTSLHQSsEKGWITDDGFQEIDIESGKVNFGWSSVDHIDI 117
                      799999999999999943.......33.369***994555589999***************9******************************99 PP

  Arylsulfotran_2 121 ipleeskaplgdfgrdeskpedyfHlNsvekfedgdyLiSlrelsslflirpkegkvlWqlqGpkggdfeldnstfsrQHdariveetedkivi 214
                      ++++    p  ++   +s  +d++HlNsv+k ++gdyL+S r+ + ++++++k+gk++Wql G+  ++f++ n+tfs+QHdar   e e+   i
       KKY14625.1 118 NRSV---TPAPKM-PGKSPGWDFIHLNSVDKNSEGDYLVSGRHTCAIYKVSGKTGKIMWQLGGE-ASSFKMINFTFSWQHDARWRFENETVALI 206
                      9999...444444.557899********************************************.9*******************999****** PP

  Arylsulfotran_2 215 slfnNentdt...nerepttglildvdlqnkevtllrklkdaedeissvsqGsyqllpnghvlveegsigrveeydangkivlearf 298
                      s  +N  t++    +++ ++g+++++d+ ++e+tl++  + + d  +++ +G++q ++ ++v++ + +++ + e++++g++vlea+f
       KKY14625.1 207 SFLDNGGTPFkwpATAKFSSGKLVKLDMTTMEATLVQSWD-RPDGRRTNKRGNVQFIG-ENVFISWSASSYLSEFSSDGELVLEAQF 291
                      **********9999999*****************998765.****************6.68************************98 PP

>> Arylsulfotrans  Arylsulfotransferase (ASST)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.5   1.5e-18   3.9e-15      83     339 ..      44     271 ..      37     303 .. 0.80

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 1.5e-18
  Arylsulfotrans  83 rlpggyidlh.Hdivelpngnllvlvaeenykrk......dgkkvktveDtiievd.ktGkvvkewdlakiLdpyrdallkaakapfgdiagvga 169
                      +p+++ ++  H+ ++ +ng + ++v+++ + ++      + +k     D   e+d ++Gkv   w  ++++d  r+       +p  + +g+  
      KKY14625.1  44 HMPKKFPKFNlHEFNVIENGSTALVVSSSFTDTDvtslhqSSEKGWITDDGFQEIDiESGKVNFGWSSVDHIDINRS------VTPAPKMPGKSP 132
                     55555555544***********9999987776665444434467777899***************************......77999******* PP

  Arylsulfotrans 170 grdWlHiNsveydekddsiivSsRhqsavvkidyrtkkvkWilgdkegwekelqkklLtpvdskGkkidleegdfdwtwgqHtavlipngstiie 264
                     g+d +H Nsv+ +  +++ +vS+Rh+ a+ k++ +t+k+ W lg +           ++ +            +f+++w qH a++  +++t+  
      KKY14625.1 133 GWDFIHLNSVDKNS-EGDYLVSGRHTCAIYKVSGKTGKIMWQLGGEASS--------FKMI------------NFTFSW-QHDARWRFENETVAL 205
                     ***********776.88899************************87642........4454............788888.677776666657888 PP

  Arylsulfotrans 265 llvFDNgdgrskeqpallspkdnySraveYkideknmTveqvweygkerGaefYSsivssveylkdkgnilvdsg 339
                     ++ +DNg +  k   a  +   ++S +   k+d+ +m ++ v++ + + G +  ++  ++v+   +  n++++ +
      KKY14625.1 206 ISFLDNGGTPFKWP-A--TA--KFSSGKLVKLDMTTMEATLVQSWDRPDGRR--TNKRGNVQFIGE--NVFISWS 271
                     8899***9888884.3..24..59**********************999876..577777777777..6666554 PP

>> Smim3  Small integral membrane protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.0   1.4e-06    0.0036       7      45 ..     472     512 ..     467     521 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.4e-06
       Smim3   7 spvevvLPkhi..LDiWvivLiiLativimtsLlLCPatav 45 
                 ++++++L k +  L     +LiiL  +v+m +L++C a a 
  KKY14625.1 472 ESTNLTLTKTVtqLHTLSTILIILFVLVVMAALVICCAGAF 512
                 67788888887223444679*****************9885 PP

>> EVC2_like  Ellis van Creveld protein 2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1     1e-05     0.027       8     109 ..     434     538 ..     426     552 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1e-05
   EVC2_like   8 YtAsleakevekgesLtLpaqLtFs..NssqnngtslgpltasltltveekekvlpnhglhaagfvvaflvslvLtllvl..lllartralkvsllsrk 102
                  +Asl++   e+ + L+ ++q  F   N  + ++++l+  +++ltlt +  ++++    +  + fv   + +lv+ ++    ++l+r + + ++ll+r+
  KKY14625.1 434 SSASLTSLTSETVDDLKSESQHKFAalNKLSEQVSDLE-ESTNLTLT-KTVTQLHTLSTILIILFVLVVMAALVICCAGAftFCLRRQHGRGCNLLTRR 530
                 479999999999999999******99999999999999.78889998.445555555555566666666667777776542267889999999999998 PP

   EVC2_like 103 rq.knree 109
                 r+ ++++ 
  KKY14625.1 531 RRnEEKQT 538
                 84233333 PP

>> IL11  Interleukin 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.3     2e-05     0.051      15      71 ..     432     487 ..     420     491 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2e-05
        IL11  15 vnqtrsLlkltkellkdhelkfpsdvehrlksLPalsnsasdls...slevkstLsqLht 71 
                 +    sL  lt+e + d++    s+ +h++  L +ls+++sdl+   +l +++t +qLht
  KKY14625.1 432 SSSSASLTSLTSETVDDLK----SESQHKFAALNKLSEQVSDLEestNLTLTKTVTQLHT 487
                 5566789999999999999....9*******************64448**********98 PP

>> TrbL  TrbL/VirB6 plasmid conjugal transfer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.8e-05     0.046      60     136 ..     431     508 ..     415     516 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.8e-05
        TrbL  60 ggallssagsstsptldql......gldvadklleqasslsffsniggilagllawlgvlllflvaavvlllakialalllal 136
                  +++++s +s+ts+t+d+l       +++++kl+eq+s+l+  +  +  l   ++ l +l  +l++   l+++ +++al+++ 
  KKY14625.1 431 ISSSSASLTSLTSETVDDLksesqhKFAALNKLSEQVSDLE--ESTNLTLTKTVTQLHTLSTILII---LFVLVVMAALVICC 508
                 3333333344444499999**********************..55555555555555444444333...23333333333333 PP

>> CD34_antigen  CD34/Podocalyxin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   3.1e-05     0.078      62     154 ..     448     543 ..     414     576 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.1e-05
  CD34_antigen  62 t...etkevlellkd...krsdLeklgIqnltsvkeaqeedirseqdyskkllialvtsglllaiLlvagyYgclhrRl....skskagerLgEelq 148
                       e+++++++l++   + sdLe+   +nlt       + +++  + s+ l+i+ v+  +++ ++  ag ++ + rR         ++ r  Ee q
    KKY14625.1 448 DlksESQHKFAALNKlseQVSDLEES--TNLT-----LTKTVTQLHTLSTILIILFVLVVMAALVICCAGAFTFCLRRQhgrgCNLLTRRRRNEEKQ 537
                   13444444444444400044444444..3444.....5677778899*************************8777765111134445555577777 PP

  CD34_antigen 149 yvEngy 154
                   +  +gy
    KKY14625.1 538 TRRSGY 543
                   777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1028  (0.0573373); expected 358.6 (0.02)
Passed bias filter:                      741  (0.0413297); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.81u 0.35s 00:00:01.16 Elapsed: 00:00:00.52
# Mc/sec: 3516.40
//
Query:       KKY14626.1  [L=176]
Description: hypothetical protein UCRPC4_g06664 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1267.61
//
Query:       KKY14633.1  [L=227]
Description: putative extracellular conserved serine-rich protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-20   71.5   3.8    7.7e-20   71.5   3.8    2.6  2  GPI-anchored    Ser-Thr-rich glycosyl-phosphatidyl-inositol-a
  ------ inclusion threshold ------
      0.012   14.2  16.8      0.015   13.9  16.8    1.0  1  Macoilin        Macoilin family
       0.39    9.9  27.6       0.45    9.7  27.6    1.0  1  SOG2            RAM signalling pathway protein
        4.7    6.8   5.3        5.5    6.5   5.3    1.1  1  DUF572          Family of unknown function (DUF572)
        5.8    3.9  16.8        6.8    3.7  16.8    1.0  1  GREB1           Gene regulated by oestrogen in breast cancer


Domain annotation for each model (and alignments):
>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   3.8   2.2e-23   7.7e-20       2      93 .]      23     115 ..      22     115 .. 0.97
   2 ?   -6.6   8.7         5   1.8e+04      68      68 ..     161     161 ..     120     214 .. 0.60

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 2.2e-23
  GPI-anchored   2 sPssgevvtagkpvtitWkdsgtdpgtvtlvLcagssnnlksvktiasgiknsdgsytwtvpaslesggaYflqiv.sesne.giynySdrFti 93 
                    Ps g++++ +k+ titW++++tdp ++++vL++++  n++   tia+++++sdg+yt++  ++  +g++Y++++v +e+++ gi+++S +Ft+
    KKY14633.1  23 YPSEGSSLDLSKSNTITWTSVSTDPDSFEIVLVNQNV-NPSVSITIAEDVETSDGEYTMSAVSDATAGSGYQINFVsTEEENeGILAQSSQFTV 115
                   69***********************************.**************************************9888899*********98 PP

  == domain 2  score: -6.6 bits;  conditional E-value: 5
  GPI-anchored  68 s 68 
                   s
    KKY14633.1 161 S 161
                   1 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9  16.8   4.3e-06     0.015     194     373 ..      15     199 ..       8     214 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.3e-06
    Macoilin 194 ymqLLqqaLPkeqqlldkeereaeeqlaaakelvevdpvalsknnhslnkkdsslklpeleyrekkksakssrsdskkkhehn....esvdsklqekey 288
                 y+  Lq   P e + ld +++++ + ++++++  + + v +++n +   + + ++++ + + + + ++ ++ ++ s+ + +      e+    +q+ ++
  KKY14633.1  15 YVSALQITYPSEGSSLDLSKSNTITWTSVSTDPDSFEIVLVNQNVNPSVSITIAEDVETSDGEYTMSAVSDATAGSGYQINFVsteeENEGILAQSSQF 113
                 788899999999999999999999999999988888888999888877776444444433333333333333333444433334443222233455555 PP

    Macoilin 289 menkskskrlsksessgsesellveesvkskssssssssnknskkasagsagssnssskkhsessksvtsss.ssknskkqklpaG 373
                 +   + s+  ++ + s+s+  ++ ++s+ s ss++ s+++ + ++as++sa+++ sss+  s+s +s +s+s ss++    ++++G
  KKY14633.1 114 TVTDAGSTSTTSASFSSSTPGTTGTSSTGSASSTTLSTTTTSDSSASSSSASAAASSSAAASSSGSSSSSAStSSASASASSTSSG 199
                 55555555555555555555555555555555555555555555555544444444444433332222222212222222222222 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  27.6   0.00012      0.45     170     351 ..      28     198 ..       7     222 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00012
        SOG2 170 kragrtksksisttssgssstlvssaesstesrassvtytart..RhagsfsaqdveqGaalt...plrsd.qipfnlsrsrrssssgnsaspaangaq 262
                 +++  +ks+ i  ts ++  +++++   ++++++s ++++a+    + g ++   ++            s  qi+f   +s ++++ g  a++    +q
  KKY14633.1  28 SSLDLSKSNTITWTSVSTDPDSFEIVLVNQNVNPSVSITIAEDveTSDGEYT--MSA-----VsdaTAGSGyQINF---VSTEEENEGILAQS----SQ 112
                 4555566666666666677777777777777777777777764332222222..111.....11233345555656...22222332233333....33 PP

        SOG2 263 setsersasssgvqssasstPlgegstsppgalsrqslst.tgststltsssksrsssrsntnasastprslattpappasaesfastlt 351
                  + ++  ++s+ + s +sstP+++g++s+ g++s+++lst t+s+s+ +sss s  +s+s++ +s+  ++s+a+t++++asa+s+   ++
  KKY14633.1 113 FTVTDAGSTSTTSASFSSSTPGTTGTSST-GSASSTTLSTtTTSDSSASSSSASAAASSSAAASSSGSSSSSASTSSASASASST---SS 198
                 33344333333367888889999999987.5555555555044455555555554444444445555555556666655555553...11 PP

>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   5.3    0.0015       5.5     224     318 ..     119     190 ..      45     219 .. 0.34

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0015
      DUF572 224 fasseesaksakkkptkkesskekkkeslekklskltkkkad...sslvvrKkkkeeekskeskekteeeskeseeeskkeeetsaeeekeekakkks 318
                  +                   ++++++s ++++   t ++++   ss+    ++++ ++s++s++++ ++s++++++s+ +++      ++++++++s
  KKY14633.1 119 GS-------------------TSTTSASFSSSTPGTTGTSSTgsaSSTTLSTTTTS-DSSASSSSASAAASSSAAASSSGSSS------SSASTSSAS 190
                 11...................11111111111111111111111100001101000.11111111111111111111111111......111111111 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  16.8    0.0019       6.8    1087    1256 ..      27     197 ..       8     213 .. 0.51

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0019
       GREB1 1087 svgsdllesdaekls..stdnedeelqedgerpksnssavqstsdsvaadaaeessktspvkvekseskdavesglsskasakselseasaaaasas 1181
                  +++ dl++s++   +  std ++ e++  +++  + s +++ ++d  ++d + + s++s++   +  + + v++  + ++   ++++  + + a ++
  KKY14633.1   27 GSSLDLSKSNTITWTsvSTDPDSFEIVLVNQN-VNPSVSITIAEDVETSDGEYTMSAVSDATAGSGYQINFVSTEEENEGILAQSSQF-TVTDAGST 121 
                  45567777775544301556666666544443.6778888889999999999999999988888877777777766666655554333.22222222 PP

       GREB1 1182 eeakspkasvtseeeeseeskekekeslsketesqlsleaseqkealdakasskssssssssssassP.ssscsla 1256
                  ++++ + +s+t  ++ ++++ + ++++ls++t+s+ s ++s++++a++++a+++ss sssss+s+ss  +s++s++
  KKY14633.1  122 STTSASFSSSTPGTTGTSSTGSASSTTLSTTTTSDSSASSSSASAAASSSAAASSSGSSSSSASTSSAsASASSTS 197 
                  2332333333333333444444555555555555555554444444444333333333333222222202222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1565  (0.0872888); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                       139  (0.0077528); expected 17.9 (0.001)
Passed Fwd filter:                        48  (0.00267723); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.00u 0.37s 00:00:01.37 Elapsed: 00:00:00.59
# Mc/sec: 1158.61
//
Query:       KKY14634.1  [L=530]
Description: putative smr domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-08   32.8   6.8    1.7e-07   31.5   6.8    1.7  1  DUF1771   Domain of unknown function (DUF1771)
     0.0007   19.2   0.0     0.0046   16.6   0.0    2.4  2  CUE       CUE domain


Domain annotation for each model (and alignments):
>> DUF1771  Domain of unknown function (DUF1771)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   6.8   1.9e-11   1.7e-07       4      62 ..     370     431 ..     368     433 .. 0.90

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 1.9e-11
     DUF1771   4 lRaeAdeharkrnelfekAaeAyrrGd.....gaaAkelseqGkehgekmeeanreAaeaIfee 62 
                 lRa A++ a   +e+f+kA+ AyrrG+     g+aA+++se G++h +++++    Aa+a++ +
  KKY14634.1 370 LRATANRVA--GSEAFSKASSAYRRGKsdrymGGAAAYYSELGRHHLKMAQAQTSSAADALVFQ 431
                 777777755..59***********************************************9865 PP

>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.1e-07    0.0046       2      39 ..     126     163 ..     125     163 .. 0.93
   2 ?   -2.0   0.0      0.34   3.1e+03      13      30 ..     291     307 ..     290     311 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.1e-07
                 HHHHHHHHHHSTTS-HHHHHHHHHHCTTTHHHHHHHHH CS
         CUE   2 eqmletLkemFPdldeevIravLrasngnvEatinaLL 39 
                 +q+ + L+ + P+  + +I++ Lr++++  E+t++ LL
  KKY14634.1 126 QQKEDRLSALLPQTNRTTIKFQLRQNGYKFEQTMDDLL 163
                 6667899*****************************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.34
                 TTS-HHHHHHHHHHCTTT CS
         CUE  13 PdldeevIravLrasngn 30 
                 P +++e+I   L a + n
  KKY14634.1 291 PTMPVEQIIGLL-AVTRN 307
                 899*****9999.77766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.53
# Mc/sec: 3029.46
//
Query:       KKY14635.1  [L=619]
Description: putative trna pseudouridine [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-07   31.8   0.0    2.5e-05   24.7   0.0    2.7  2  PseudoU_synth_1  tRNA pseudouridine synthase
  ------ inclusion threshold ------
      0.015   14.4   0.5        3.8    6.5   0.2    2.3  2  FSIP1            FSIP1 family


Domain annotation for each model (and alignments):
>> PseudoU_synth_1  tRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0065        58      44      80 ..     124     167 ..      44     178 .. 0.72
   2 !   24.7   0.0   2.8e-09   2.5e-05       4     107 ..     406     509 ..     403     510 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0065
  PseudoU_synth_1  44 l........vvtvkgsgFldhqVRamvgvlfavgqgklspedvke 80 
                      +        +v++   +++d++V+a ++v+       +++++vk+
       KKY14635.1 124 SkanandpkKVSFVRCARTDKGVHAAGNVI-SLKLIIEDEDIVKK 167
                      0333345558999999***********998.44444455555555 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 2.8e-09
  PseudoU_synth_1   4 elvGthdfgsfckqkqek.kntvrtileaaiee..vsgeekellvvtvkgsgFldhqVRamvgvlfavgqgklspedvkellnakkrkkiavet 94 
                      +++G + f +++  k+   ++  r i+++++ +  +  +  e+l ++v+g++F+ hq+R mvg++ +  +      d+k++ ++    kia+++
       KKY14635.1 406 SYEGNRRFHNYTIGKKFRdPSASRFIKSFKVNQtpIIINGTEWLSLKVHGQSFMMHQIRKMVGMATLLVRCGC---DLKRIGESYGSVKIAIPK 496
                      78999999998444443345555555555555411334456888*********************55444444...445555555555588888 PP

  PseudoU_synth_1  95 apavglvlfhvrY 107
                      ap  gl l++  +
       KKY14635.1 497 APGLGLLLERPVF 509
                      8888888877666 PP

>> FSIP1  FSIP1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0   0.00066       5.9     182     222 ..      47      87 ..      41     112 .. 0.79
   2 ?    6.5   0.2   0.00043       3.8      69     124 ..     252     381 ..     206     392 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.00066
       FSIP1 182 seetedvshveeeetfvpvFatqipeeeyensassekkdfa 222
                 +e+++++ ++e+ et  p++atq p+ee e +a+  kk++a
  KKY14635.1  47 EENAAKRRRLENGETELPIYATQFPQEEIEAEARRPKKKVA 87 
                 4555666699******************9888887777744 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.00043
       FSIP1  69 d...............................................dseedsseekiklakesededvdevq...eqevpeksdesnlkel...... 111
                                                                  s++ +s  ++++++++e    ++v+   ++++p++++  +  e       
  KKY14635.1 252 VikpildnydearraillralyprdndlyedegmegslevqnglastpASQTAQSATNANVKEDAEAPADPQVTsiiTEASPANETSGETSEApiqnta 350
                 155555555555555555555555554444444444444444444333444444444444333333322222223334444444444444444667778 PP

       FSIP1 112 ..................DpklqeAikkmkk 124
                                   Dp +qeAi+ +kk
  KKY14635.1 351 gtetssgpdniaytdprrDPAIQEAIRTLKK 381
                 89999999999999*************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.51
# Mc/sec: 3621.67
//
Query:       KKY14636.1  [L=433]
Description: putative beta-ig-h3 fasciclin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-36  124.7   0.2    9.4e-17   61.4   0.1    2.3  2  Fasciclin    Fasciclin domain


Domain annotation for each model (and alignments):
>> Fasciclin  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   6.7e-21   1.2e-16       2     128 .]      39     183 ..      38     183 .. 0.83
   2 !   61.4   0.1   5.2e-21   9.4e-17       5     125 ..     198     313 ..     194     316 .. 0.83

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 6.7e-21
                 GGHHHHHHHHTT..TCCCCCT...CSSSSEEEEEE-HHHHCCCHHHHHHHHHT..CHHHHHHHHHTTEEESSS-HHHHHHH........HEEEEC.CTT CS
   Fasciclin   2 dlstfvslleka..glaeeLn...kkdgglTvFaPtneAfaklppellaklln..dkkklkeiLkyHvvpetvsssalkka........setlat.lle 84 
                 +l++f+ l+++   ++ + L+     ++++Tv+aP+n+Af k+p +   + +n  d ++ +e+ +yHv+p+t+s+++++++          + at + +
  KKY14636.1  39 NLTKFYGLMQEKypDFLSILEaqnTAEQPITVLAPSNDAFVKIPDSSIGEAFNnnDTDAIREVFMYHVLPGTHSTASFSTSfqflatwlADSSATnVTS 137
                 6788888888665677777754444556***************999998888878999***********************888888884444444778 PP

                 SSEEEEEEEGGTTEEEETT...EEEEEEEEEEESSEEEEEESS-TSX CS
   Fasciclin  85 gaklrvniekgngtvtvng...karvvrsdieatngvihvidkvLlp 128
                 g++++v  + +   +++ g   +++++++di  t gv+h+id   +p
  KKY14636.1 138 GQRVGVVQQ-TPYYIFISGlgtRSTITTADIYFTGGVLHIIDMPVIP 183
                 889998888.556999999***********************98776 PP

  == domain 2  score: 61.4 bits;  conditional E-value: 5.2e-21
                 HHHHHHHTT.TCCCCCTCSSSSEEEEEE-HHHHCCCHHHHHHHHHTCHHHHHHHHHTTEEES...SS-HHHHHHHHEEEECCTTSSEEEEEEEGGTTEE CS
   Fasciclin   5 tfvslleka.glaeeLnkkdgglTvFaPtneAfaklppellakllndkkklkeiLkyHvvpe...tvsssalkkasetlatllegaklrvniekgngtv 99 
                  f  +  ++  la+ + + ++ +T+FaP n+Af+ +   + + l ++++ l+ i++yH++ +    ++s  l ++ + ++t l+g++l+v     ++++
  KKY14636.1 198 AFLGAAYQNlTLANLM-NLTSDITIFAPVNNAFESI---NTSPLISSNSTLSPIIQYHIIISpsgPLYSPLLTNG-TIFTT-LSGTNLTVYSA--SNSI 288
                 5555555553555555.6668************999...66777789************9664235699999998.88998.***********..99** PP

                 EETTEEEEEEEEEEESSEEEEEESS- CS
   Fasciclin 100 tvngkarvvrsdieatngvihvidkv 125
                 ++n+ ar+++sd   +ngv+h+id+v
  KKY14636.1 289 FINN-ARLLQSDLLLANGVMHTIDSV 313
                 ****.********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2761.17
//
Query:       KKY14712.1  [L=2671]
Description: putative translational activator gcn1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-93  314.0   2.6    1.5e-93  314.0   2.6    4.1  5  Gcn1_N         Generalcontrol nonderepressible 1 (Gcn1) N-ter
      2e-28   98.4  46.4    2.5e-05   24.7   0.0   19.9 22  HEAT_EZ        HEAT-like repeat
      4e-28   95.1  46.7       0.03   14.6   0.1   22.7 23  HEAT           HEAT repeat
    4.2e-22   78.3  54.4    3.9e-05   24.0   3.5   16.2 18  HEAT_2         HEAT repeats
    1.2e-12   48.2   9.3      0.037   14.1   0.2   10.0 11  Cnd1           non-SMC mitotic condensation complex subunit 1
    1.8e-12   46.6  11.3    2.3e-05   23.2   0.0    7.9  7  Adaptin_N      Adaptin N terminal region
    9.2e-12   45.0   1.1       0.32   10.5   0.0    7.5  7  CLASP_N        CLASP N terminal
    1.1e-11   45.2   2.6    0.00018   21.6   0.0    7.2  8  ParcG          Parkin co-regulated protein
    1.2e-10   41.8   0.1        3.8    8.2   0.0    8.6  8  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
    3.7e-06   26.8   2.3      0.063   13.0   0.0    6.7  8  TIP120         TATA-binding protein interacting (TIP20)
    3.8e-06   26.8   6.5        5.2    7.1   0.0    9.1  8  UME            UME (NUC010) domain
    4.8e-05   23.6  13.8         98    4.1   0.9   10.4  9  HEAT_PBS       PBS lyase HEAT-like repeat
     0.0003   21.4   7.2        2.3    8.8   0.0    6.5  4  DUF937         Bacterial protein of unknown function (DUF937)
     0.0014   18.3   1.9        7.4    6.0   0.0    5.7  5  Tti2           Tti2 family
     0.0049   16.8   2.3        2.6    8.0   0.1    6.0  5  DUF3385        Domain of unknown function (DUF3385)
  ------ inclusion threshold ------
      0.017   14.2   0.0      0.017   14.2   0.0    8.7 11  MMS19_C        RNAPII transcription regulator C-terminal
       0.11   11.9   0.0         30    3.9   0.0    3.3  3  Mo25           Mo25-like
       0.14   12.6   0.4         12    6.4   0.0    4.1  3  RasGEF_N_2     Rapamycin-insensitive companion of mTOR RasGEF
       0.19   12.0   5.4       0.73   10.1   0.1    4.4  4  FANCI_S2       FANCI solenoid 2
        5.7    7.1  16.7        4.5    7.5   0.2    7.9  7  Arm            Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> Gcn1_N  Generalcontrol nonderepressible 1 (Gcn1) N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.4       4.3   3.8e+03     100     146 ..     118     164 ..      74     183 .. 0.61
   2 !  314.0   2.6   1.7e-96   1.5e-93       2     355 ..     363     712 ..     362     715 .. 0.95
   3 ?   -3.8   0.0       6.6   5.9e+03     242     265 ..    1149    1172 ..    1145    1173 .. 0.89
   4 ?   -1.1   0.4         1   9.1e+02     234     353 ..    1861    1988 ..    1858    1993 .. 0.60
   5 ?   -4.1   0.0       8.1   7.2e+03     109     130 ..    2309    2330 ..    2299    2341 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.3
      Gcn1_N 100 llsssvaaskfaeavlpkLektlkevvanPlpaaqsglvseayvvla 146
                  ++++++  ++ ++v+p L ++  +  ++ l a++ + v ++  v+a
  KKY14712.1 118 ATQEAAQDPALSKTVIPDLSNAAAKSLEKCLHATSRPSVAKSALVVA 164
                 33333344556666666666666666666666666666655555554 PP

  == domain 2  score: 314.0 bits;  conditional E-value: 1.7e-96
      Gcn1_N   2 dhRvllaemLsalppsesvsskileglapllaKEtnEaalaaevsalakhltfllksgvevpkkvvdaivkGladkKppvRrlwalrvGevlwnleee. 99 
                 + R lla++++a p s ++ss  + +l pl+ KE+nE+a +a+vs+++++lt++  ++   +++ +d ++kG+++k++p+Rrlw l+vG++lw+l++  
  KKY14712.1 363 ELRGLLARVIQAFPDSAKISSMTAGALGPLALKESNETAAEALVSSFCHELTTIFAKDGIPDASLLDILKKGCQEKRLPIRRLWHLKVGQLLWTLKDRe 461
                 56999****************************************************98888**********************************987 PP

      Gcn1_N 100 llsssvaaskfaeavlpkLektlkevvanPlpaaqsglvseayvvlalllgrlsssgsskvesllkkasivkqllalepKpsfLlnpkvYsKltseedl 198
                 ++ +++  ++  ++vl+ L + + evv++ ++ aq  ++s+a+v++al++  + s    k     ++++   q+l+++pKpsfLl+++ Y+++t+++dl
  KKY14712.1 462 EVFETN--EEIFKSVLQTLQSVFSEVVSTSTAQAQPATISSALVFTALTNLDAISL---KLGFSAARKNACAQALSIKPKPSFLLSSRTYTRFTTDDDL 555
                 666766..99***************************************8777666...444456788889**************************** PP

      Gcn1_N 199 kWllRAlaavasalkeesseeaaktawaqafiylivsssvspevRrealealsklyaanpelvskviiealwswlesleeaekdsaavlaktenenLsl 297
                  W++RAl+ v+s+l++e +  + + awaqa++++++++ +sp+vR ea ++ls+ y+  p ++sk++++++w+wle+l  ++kdsaav++k+++ +L l
  KKY14712.1 556 IWCIRALSGVSSQLANEPE--DCSLAWAQAYLFILAANGISPQVRAEAGKSLSSSYLDAPGQISKAVVKGIWQWLEHLALSTKDSAAVSSKSGTLRLYL 652
                 ***************9988..****************************************************************************** PP

      Gcn1_N 298 vlkaiclsp..aeklgkdvdeevlekqlvellVlarheliprssWIdlclragvDPgkLv 355
                 ++++ic+++   e+ +  + +e+le+qlv+l +l r++++pr++WI++clr+g+DPg+L 
  KKY14712.1 653 AVRSICPPKdaTEASRYRATQETLESQLVQLQILLRPQVMPRVKWIEMCLRTGLDPGSLG 712
                 *******98998888899***************************************995 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 6.6
      Gcn1_N  242 vRrealealsklyaanpelvskvi 265 
                  +Rr a++al +l++++p+++ +vi
  KKY14712.1 1149 TRRTAAKALLALVKQYPSVLPQVI 1172
                  8****************9999888 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 1
      Gcn1_N  234 vsssvspevRrealealsklyaanpelvskviiealwswlesleeaekdsaavlaktenenLsl.....vlkaiclspaeklgkdvdeevlek...q 322 
                  +  ++s  vR +a+ + ++l+a+ p ++++++    + ++++l ++++ +++v a+++  ++ +     vl a+ ++  e l++++d ++++     
  KKY14712.1 1861 CRCDTSGLVRTAAVAVWKALVAS-PRTLKELVPTLSQLIISRL-ASSNMEQKVIASNALGEMIRkagegVLLALLPELEEGLQSSTDVDTRQGiciA 1955
                  55556667888888777777776.6666555543333333333.33333334444444333222233348888888667777777777777761115 PP

      Gcn1_N  323 lvellVlarhelip..rssWIdlclragvDPgk 353 
                  l el+V a +e +   +++ I ++  a vDP +
  KKY14712.1 1956 LRELIVAAAPESLEdhEKTLISVVRTALVDPDS 1988
                  568899999999998666889999999999876 PP

  == domain 5  score: -4.1 bits;  conditional E-value: 8.1
      Gcn1_N  109 kfaeavlpkLektlkevvanPl 130 
                   f++ +lp+L  t+++  a P 
  KKY14712.1 2309 LFVKPFLPQLQRTFTKCLADPS 2330
                  599**************99997 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       3.2   2.8e+03      28      54 ..     306     332 ..     300     333 .. 0.86
   2 ?    0.4   0.0       1.1   9.9e+02      18      50 ..    1055    1087 ..    1049    1089 .. 0.75
   3 ?   -2.4   0.0       8.3   7.4e+03       4      33 ..    1150    1175 ..    1148    1178 .. 0.49
   4 ?    2.0   0.0      0.34   3.1e+02       1      34 [.    1205    1235 ..    1205    1249 .. 0.81
   5 !    9.5   0.0    0.0015       1.4      26      53 ..    1313    1340 ..    1300    1342 .. 0.89
   6 !    7.5   0.0    0.0065       5.9      19      49 ..    1426    1456 ..    1409    1458 .. 0.84
   7 ?   -0.9   0.0       2.8   2.5e+03      26      40 ..    1471    1483 ..    1459    1486 .. 0.78
   8 !   24.7   0.0   2.7e-08   2.5e-05       1      54 [.    1487    1540 ..    1487    1541 .. 0.95
   9 ?   -0.7   0.0       2.4   2.2e+03      23      45 ..    1547    1569 ..    1543    1571 .. 0.86
  10 !    8.3   0.1    0.0037       3.3       7      55 .]    1610    1659 ..    1604    1659 .. 0.80
  11 !    9.3   0.2    0.0018       1.6       1      40 [.    1646    1682 ..    1646    1698 .. 0.74
  12 ?   -1.8   0.0       5.6     5e+03       5      46 ..    1689    1727 ..    1686    1736 .. 0.67
  13 !    8.0   0.0    0.0046       4.1      20      51 ..    1742    1773 ..    1725    1773 .. 0.85
  14 ?   -1.4   0.0         4   3.5e+03      25      45 ..    1785    1805 ..    1782    1813 .. 0.76
  15 !    7.1   0.1    0.0088       7.9       7      55 .]    1875    1920 ..    1869    1920 .. 0.93
  16 !   14.8   0.1   3.6e-05     0.032       5      55 .]    1911    1959 ..    1908    1959 .. 0.91
  17 !    9.3   0.1    0.0018       1.6      17      52 ..    1963    1998 ..    1960    2001 .. 0.89
  18 !    9.4   0.6    0.0017       1.6       3      40 ..    1990    2024 ..    1989    2037 .. 0.80
  19 ?    1.1   0.1      0.69   6.1e+02       7      41 ..    2064    2093 ..    2062    2098 .. 0.89
  20 ?    3.7   0.0       0.1        92      26      55 .]    2232    2261 ..    2228    2261 .. 0.90
  21 !    8.9   0.0    0.0025       2.2       3      55 .]    2250    2303 ..    2248    2303 .. 0.90
  22 !    9.2   0.1    0.0019       1.7      22      55 .]    2311    2345 ..    2304    2345 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 3.2
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaAagaLgn 54 
                  + ++Ll+ L++ ++ ++  A+  ++ 
  KKY14712.1 306 NLAKPLLSSLTSTNPIIKNGACQSFES 332
                 567899****************98876 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.1
     HEAT_EZ   18 epellqplvpeilpaLlalLnddsdeVRaaAag 50  
                  +++  +      +  Lla+ ++++d+V+ a++ 
  KKY14712.1 1055 CRCIAANIERTEINVLLAGATSPDDSVKIAVLQ 1087
                  5555555666667789************99875 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 8.3
     HEAT_EZ    4 RraAawaLGrlaggepellqplvpeilpaL 33  
                  Rr Aa aL +l  + p  l+    +++++L
  KKY14712.1 1150 RRTAAKALLALVKQYPSVLP----QVIRFL 1175
                  67777766233334444333....444444 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.34
     HEAT_EZ    1 wrvRraAawaLGrlaggepellqplvpeilpaLl 34  
                  w++R + a+a+G   +  + ++ + +++++++L+
  KKY14712.1 1205 WEIRSGIASAFG---VLSKVYQTDSLSQLMKFLI 1235
                  899999******...88899*************9 PP

  == domain 5  score: 9.5 bits;  conditional E-value: 0.0015
     HEAT_EZ   26 vpeilpaLlalLnddsdeVRaaAagaLg 53  
                  v +++  Lla+L+++s +V++a+ag+L+
  KKY14712.1 1313 VVAVIERLLATLSTPSESVQYAVAGCLT 1340
                  6789**********************96 PP

  == domain 6  score: 7.5 bits;  conditional E-value: 0.0065
     HEAT_EZ   19 pellqplvpeilpaLlalLnddsdeVRaaAa 49  
                  +++ +p++  ilp+Llal  d s++VR+a++
  KKY14712.1 1426 GRTFEPYIIHILPQLLALFGDASADVREACL 1456
                  5667889999*******************97 PP

  == domain 7  score: -0.9 bits;  conditional E-value: 2.8
     HEAT_EZ   26 vpeilpaLlalLndd 40  
                  v++ilp+Ll +L  d
  KKY14712.1 1471 VKQILPQLLEGL--D 1483
                  89*******999..4 PP

  == domain 8  score: 24.7 bits;  conditional E-value: 2.7e-08
     HEAT_EZ    1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54  
                  wr + +A+  LG++a   p++l+  +p+i+p+L   Lnd ++eVRa A + L +
  KKY14712.1 1487 WRSKKGACDLLGAMAYLDPQQLAVSLPDIIPPLTGVLNDTHKEVRASANRSLQR 1540
                  778899*******************************************99987 PP

  == domain 9  score: -0.7 bits;  conditional E-value: 2.4
     HEAT_EZ   23 qplvpeilpaLlalLnddsdeVR 45  
                  +p+++ +++ Ll++L+d+ +++ 
  KKY14712.1 1547 NPEIKSLVDILLSALSDPTKHTE 1569
                  58999************999865 PP

  == domain 10  score: 8.3 bits;  conditional E-value: 0.0037
     HEAT_EZ    7 AawaLGrlaggepel.lqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55  
                  A   +G+la   +   l+ ++p +++ L a+  d+ +++Ra+A  aLg l
  KKY14712.1 1610 ASQIIGSLAHLTDKKdLSSHLPILVAGLRAASVDPVPATRATASKALGSL 1659
                  5556666555555444999*****************************86 PP

  == domain 11  score: 9.3 bits;  conditional E-value: 0.0018
     HEAT_EZ    1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLndd 40  
                  ++ R+ A  aLG+       l ++++p+++p L++ L+++
  KKY14712.1 1646 PATRATASKALGS---LVEKLGEDALPDLIPSLMSNLRSE 1682
                  578999999***5...556888888888888888776654 PP

  == domain 12  score: -1.8 bits;  conditional E-value: 5.6
     HEAT_EZ    5 raAawaLGr.laggepellqplvpeilpaLlalLnddsdeVRa 46  
                   + a aL++ lag +   l+    e lp  l+  ++ +++VR+
  KKY14712.1 1689 LGSAQALSEvLAGLGTTRLE----ETLPTILQNVSSTKPTVRE 1727
                  56788998777766666666....5555555555555557776 PP

  == domain 13  score: 8.0 bits;  conditional E-value: 0.0046
     HEAT_EZ   20 ellqplvpeilpaLlalLnddsdeVRaaAaga 51  
                  +  ++++ +i+p+ l++L dd  ++R++A++a
  KKY14712.1 1742 NSFATYLNKIIPPILSGLADDVEAIRETALRA 1773
                  556789999*********************98 PP

  == domain 14  score: -1.4 bits;  conditional E-value: 4
     HEAT_EZ   25 lvpeilpaLlalLnddsdeVR 45  
                  +++ +lp+L ++L dds ++R
  KKY14712.1 1785 AIDLLLPELQRGLADDSYRIR 1805
                  677899999999999985666 PP

  == domain 15  score: 7.1 bits;  conditional E-value: 0.0088
     HEAT_EZ    7 Aaw.aLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55  
                  A+w aL    +  p++l+ lvp +  + +++L +++ e +  A  aLg +
  KKY14712.1 1875 AVWkAL----VASPRTLKELVPTLSQLIISRLASSNMEQKVIASNALGEM 1920
                  788888....999***********9999********************86 PP

  == domain 16  score: 14.8 bits;  conditional E-value: 3.6e-05
     HEAT_EZ    5 raAawaLGrlaggepellqplvpeilpaLlalLnddsd.eVRaaAagaLgnl 55  
                    A +aLG   ++ + + ++++ ++lp+L  +L+++ d ++R+  ++aL+ l
  KKY14712.1 1911 VIASNALG---EMIRKAGEGVLLALLPELEEGLQSSTDvDTRQGICIALREL 1959
                  56889***...888999999999**************************976 PP

  == domain 17  score: 9.3 bits;  conditional E-value: 0.0018
     HEAT_EZ   17 gepellqplvpeilpaLlalLnddsdeVRaaAagaL 52  
                   +pe l+++ + ++     +L d++++VR+aAa a+
  KKY14712.1 1963 AAPESLEDHEKTLISVVRTALVDPDSDVREAAAEAF 1998
                  57999999999999999999999999*******996 PP

  == domain 18  score: 9.4 bits;  conditional E-value: 0.0017
     HEAT_EZ    3 vRraAawaLGrlaggepellqplvpeilpaLlalLndd 40  
                  vR+aAa a+    +    l + +v+++lp+Ll+lL+++
  KKY14712.1 1990 VREAAAEAFD---SLQQILGKRAVDQVLPYLLSLLQNE 2024
                  9********7...444667888*************875 PP

  == domain 19  score: 1.1 bits;  conditional E-value: 0.69
     HEAT_EZ    7 AawaLGrlaggepellqplvpeilpaLlalLndds 41  
                  +a aL++la+++++++   +p i+  L+     d+
  KKY14712.1 2064 NAKALASLAEVAGPAMTRRLPSIINNLV-----DN 2093
                  6899*99**********99999999999.....65 PP

  == domain 20  score: 3.7 bits;  conditional E-value: 0.1
     HEAT_EZ   26 vpeilpaLlalLnddsdeVRaaAagaLgnl 55  
                  + +ilp +l++L++   + R++Aa a++ +
  KKY14712.1 2232 INAILPIFLQGLMNGTVDQRTQAAMAISEI 2261
                  6689***********************986 PP

  == domain 21  score: 8.9 bits;  conditional E-value: 0.0025
     HEAT_EZ    3 vRraAawaLGr.laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55  
                  +R  Aa+a+++ +    pe l+p+v++i  +L++  +  s +V++a + +L +l
  KKY14712.1 2250 QRTQAAMAISEiIDRTSPESLKPFVTQITGPLIRVISERSVDVKCAILTTLNQL 2303
                  6999*****99988888999*************9998888899***99999876 PP

  == domain 22  score: 9.2 bits;  conditional E-value: 0.0019
     HEAT_EZ   22 lqplvpeilpaLlalLnddsd.eVRaaAagaLgnl 55  
                  ++p++p++ + + ++L d+s+ + R  Aa aLg l
  KKY14712.1 2311 VKPFLPQLQRTFTKCLADPSSdLLRSRAAKALGTL 2345
                  5789999999999*****888466********976 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1         6   5.4e+03       1      28 [.      49      77 ..      49      79 .. 0.87
   2 ?   -0.9   0.0       3.1   2.8e+03       5      31 .]     311     337 ..     308     337 .. 0.87
   3 ?   -0.2   0.0       1.8   1.6e+03       3      24 ..    1068    1089 ..    1067    1091 .. 0.88
   4 ?    3.7   0.0       0.1        91       8      30 ..    1141    1163 ..    1138    1164 .. 0.86
   5 ?    2.0   0.0      0.38   3.4e+02      12      30 ..    1203    1221 ..    1195    1222 .. 0.89
   6 ?    2.5   0.0      0.25   2.2e+02       2      27 ..    1317    1342 ..    1316    1344 .. 0.86
   7 !   11.3   0.1   0.00037      0.33       1      22 [.    1436    1457 ..    1436    1464 .. 0.94
   8 ?    4.6   0.0     0.055        49       1      28 [.    1474    1501 ..    1474    1503 .. 0.95
   9 !    9.4   0.0    0.0015       1.3       1      29 [.    1515    1543 ..    1515    1545 .. 0.91
  10 ?   -1.7   0.0       5.8   5.2e+03       3      20 ..    1594    1611 ..    1592    1612 .. 0.85
  11 !    8.6   0.0    0.0028       2.5       9      30 ..    1641    1662 ..    1630    1663 .. 0.82
  12 ?    1.7   0.0      0.47   4.2e+02       2      18 ..    1711    1727 ..    1711    1728 .. 0.96
  13 !    8.7   0.0    0.0027       2.4       1      28 [.    1751    1778 ..    1751    1781 .. 0.87
  14 !   10.7   0.0   0.00061      0.54       1      29 [.    1789    1817 ..    1789    1819 .. 0.93
  15 ?    1.7   0.2      0.47   4.2e+02       7      28 ..    1860    1881 ..    1854    1883 .. 0.78
  16 ?    2.3   0.0      0.29   2.6e+02       4      29 ..    1897    1922 ..    1894    1924 .. 0.89
  17 ?    0.0   0.0       1.6   1.4e+03       1      27 [.    1932    1959 ..    1932    1960 .. 0.91
  18 !   14.6   0.1   3.3e-05      0.03       1      30 [.    1975    2004 ..    1975    2005 .. 0.88
  19 ?    5.5   0.0     0.027        24       2      29 ..    2168    2195 ..    2167    2197 .. 0.86
  20 ?    6.4   0.0     0.014        13       1      28 [.    2235    2262 ..    2235    2264 .. 0.95
  21 ?   -1.5   0.0         5   4.5e+03      12      30 ..    2288    2306 ..    2280    2307 .. 0.80
  22 !    9.7   0.1    0.0013       1.1       3      28 ..    2320    2346 ..    2318    2348 .. 0.87
  23 ?   -1.7   0.0       5.7   5.1e+03       3      30 ..    2559    2586 ..    2557    2587 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 6
                HHHHHHHHH.T-SSHHHHHHHHHHHHHHH CS
        HEAT  1 llPlllkll.sDpspeVReaAakaLgala 28
                llPlll+ + + ++ + R+a+ +++ +l+
  KKY14712.1 49 LLPLLLETIpRYSDRNSRRAVQNCIRTLL 77
                79999999999999999999999999886 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 3.1
                 HHHHHT-SSHHHHHHHHHHHHHHHHCS CS
        HEAT   5 llkllsDpspeVReaAakaLgalaevl 31 
                 ll+ l++++p +   A++++  l++ +
  KKY14712.1 311 LLSSLTSTNPIIKNGACQSFESLLSRC 337
                 78889**************99998765 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.8
                  HHHHHHHT-SSHHHHHHHHHHH CS
        HEAT    3 PlllkllsDpspeVReaAakaL 24  
                  ++ll   ++p+ +V  a+++++
  KKY14712.1 1068 NVLLAGATSPDDSVKIAVLQSI 1089
                  7899999***********9987 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.1
                  HHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    8 llsDpspeVReaAakaLgalaev 30  
                   l  p++  R++AakaL al+++
  KKY14712.1 1141 YLDAPDAGTRRTAAKALLALVKQ 1163
                  577899999***********986 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.38
                  SSHHHHHHHHHHHHHHHHC CS
        HEAT   12 pspeVReaAakaLgalaev 30  
                  +++e+R+  a a+g l++v
  KKY14712.1 1203 DHWEIRSGIASAFGVLSKV 1221
                  58**************997 PP

  == domain 6  score: 2.5 bits;  conditional E-value: 0.25
                  HHHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT    2 lPlllkllsDpspeVReaAakaLgal 27  
                  +  ll  ls ps +V +a+a +L+ l
  KKY14712.1 1317 IERLLATLSTPSESVQYAVAGCLTPL 1342
                  6678888999*************865 PP

  == domain 7  score: 11.3 bits;  conditional E-value: 0.00037
                  HHHHHHHHHT-SSHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAak 22  
                  +lP ll l  D s++VRea++ 
  KKY14712.1 1436 ILPQLLALFGDASADVREACLD 1457
                  89******************97 PP

  == domain 8  score: 4.6 bits;  conditional E-value: 0.055
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgala 28  
                  +lP ll+ l  + ++  + A+  Lga+a
  KKY14712.1 1474 ILPQLLEGLDESQWRSKKGACDLLGAMA 1501
                  89*******99***************98 PP

  == domain 9  score: 9.4 bits;  conditional E-value: 0.0015
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalae 29  
                  ++P+l   l+D++ eVR++A ++L ++  
  KKY14712.1 1515 IIPPLTGVLNDTHKEVRASANRSLQRFGD 1543
                  79******************999998866 PP

  == domain 10  score: -1.7 bits;  conditional E-value: 5.8
                  HHHHHHHT-SSHHHHHHH CS
        HEAT    3 PlllkllsDpspeVReaA 20  
                   +l + lsD s+  R+a+
  KKY14712.1 1594 RILERGLSDRSATKRKAS 1611
                  678899*********985 PP

  == domain 11  score: 8.6 bits;  conditional E-value: 0.0028
                  HT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    9 lsDpspeVReaAakaLgalaev 30  
                    Dp p  R++A kaLg l+e+
  KKY14712.1 1641 SVDPVPATRATASKALGSLVEK 1662
                  458****************997 PP

  == domain 12  score: 1.7 bits;  conditional E-value: 0.47
                  HHHHHHHHT-SSHHHHH CS
        HEAT    2 lPlllkllsDpspeVRe 18  
                  lP++l++ s++ p VRe
  KKY14712.1 1711 LPTILQNVSSTKPTVRE 1727
                  8***************7 PP

  == domain 13  score: 8.7 bits;  conditional E-value: 0.0027
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgala 28  
                  ++P++l+ l D+   +Re+A++a   l+
  KKY14712.1 1751 IIPPILSGLADDVEAIRETALRAGRLLV 1778
                  79*******************9966555 PP

  == domain 14  score: 10.7 bits;  conditional E-value: 0.00061
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalae 29  
                  llP l++ l D+s ++R ++++ +g+l+ 
  KKY14712.1 1789 LLPELQRGLADDSYRIRLSSVELVGDLLF 1817
                  89************************975 PP

  == domain 15  score: 1.7 bits;  conditional E-value: 0.47
                  HHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    7 kllsDpspeVReaAakaLgala 28  
                   + +D+s  VR aA+    al+
  KKY14712.1 1860 ICRCDTSGLVRTAAVAVWKALV 1881
                  4459***********9877775 PP

  == domain 16  score: 2.3 bits;  conditional E-value: 0.29
                  HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    4 lllkllsDpspeVReaAakaLgalae 29  
                  l+++ l ++++e+   A +aLg++++
  KKY14712.1 1897 LIISRLASSNMEQKVIASNALGEMIR 1922
                  68999*****************9975 PP

  == domain 17  score: 0.0 bits;  conditional E-value: 1.6
                  HHHHHHHHH.T-SSHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkll.sDpspeVReaAakaLgal 27  
                  llP l + l s+++ + R+  + aL +l
  KKY14712.1 1932 LLPELEEGLqSSTDVDTRQGICIALREL 1959
                  79*******888*******999999987 PP

  == domain 18  score: 14.6 bits;  conditional E-value: 3.3e-05
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalaev 30  
                  l+ ++ ++l Dp+++VReaAa+a+  l ++
  KKY14712.1 1975 LISVVRTALVDPDSDVREAAAEAFDSLQQI 2004
                  577888999***************998875 PP

  == domain 19  score: 5.5 bits;  conditional E-value: 0.027
                  HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    2 lPlllkllsDpspeVReaAakaLgalae 29  
                  + +ll   +D + eV +aA  aL +l +
  KKY14712.1 2168 IRVLLLSFNDGDNEVIKAAWTALNQLTS 2195
                  66777779*****************987 PP

  == domain 20  score: 6.4 bits;  conditional E-value: 0.014
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgala 28  
                  +lP++l+ l+    ++R  Aa a+ +++
  KKY14712.1 2235 ILPIFLQGLMNGTVDQRTQAAMAISEII 2262
                  89***********************997 PP

  == domain 21  score: -1.5 bits;  conditional E-value: 5
                  SSHHHHHHHHHHHHHHHHC CS
        HEAT   12 pspeVReaAakaLgalaev 30  
                   s +V +a + +L +l+e+
  KKY14712.1 2288 RSVDVKCAILTTLNQLLEK 2306
                  6789************986 PP

  == domain 22  score: 9.7 bits;  conditional E-value: 0.0013
                  HHHHHHHT-SSHHH.HHHHHHHHHHHH CS
        HEAT    3 PlllkllsDpspeV.ReaAakaLgala 28  
                   ++ k+l Dps++  R+ AakaLg+l+
  KKY14712.1 2320 RTFTKCLADPSSDLlRSRAAKALGTLI 2346
                  5799*****999955*********996 PP

  == domain 23  score: -1.7 bits;  conditional E-value: 5.7
                  HHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    3 PlllkllsDpspeVReaAakaLgalaev 30  
                  P++ +  +Dp   +  aA  a+ +l +v
  KKY14712.1 2559 PPIFQSVRDPVIPIKLAAEAAFLELFQV 2586
                  8889999**********98888887765 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.88   7.9e+02       8      51 ..      16      69 ..      11     100 .. 0.69
   2 ?   -2.3   0.0         7   6.3e+03      16      56 ..     346     390 ..     309     408 .. 0.57
   3 ?   -0.1   0.0       1.4   1.2e+03      34      76 ..     583     637 ..     557     643 .. 0.62
   4 ?   -1.9   0.0       4.9   4.4e+03      26      67 ..     713     760 ..     710     765 .. 0.61
   5 ?   -1.0   0.0       2.6   2.3e+03       2      24 ..    1068    1089 ..    1054    1107 .. 0.72
   6 ?    6.7   0.0      0.01       9.3      37      79 ..    1139    1187 ..    1116    1189 .. 0.78
   7 ?   -0.4   0.0       1.7   1.5e+03      40      72 ..    1240    1275 ..    1203    1285 .. 0.63
   8 !    8.4   0.0    0.0031       2.8       2      76 ..    1318    1407 ..    1317    1419 .. 0.75
   9 !   20.5   0.1   5.2e-07   0.00047       1      87 [.    1437    1538 ..    1437    1539 .. 0.82
  10 !   21.6   0.1   2.4e-07   0.00021       1      77 [.    1475    1567 ..    1475    1576 .. 0.77
  11 !   14.2   1.5   4.7e-05     0.042      15      87 ..    1605    1695 ..    1589    1696 .. 0.68
  12 ?    4.7   0.0     0.045        40      19      53 ..    1697    1731 ..    1693    1773 .. 0.69
  13 ?    2.6   0.1       0.2   1.8e+02      31      84 ..    1750    1809 ..    1739    1813 .. 0.68
  14 ?   -0.3   0.1       1.6   1.4e+03      40      53 ..    1862    1875 ..    1829    1916 .. 0.59
  15 !   24.0   3.5   4.4e-08   3.9e-05       1      84 [.    1933    2034 ..    1933    2038 .. 0.77
  16 ?    3.9   0.2     0.077        69       1      67 [.    2014    2083 ..    2014    2099 .. 0.78
  17 ?    2.2   0.0      0.26   2.3e+02      10      60 ..    2135    2195 ..    2126    2211 .. 0.70
  18 !   12.7   0.0   0.00014      0.13       3      88 .]    2280    2343 ..    2236    2379 .. 0.53

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.88
      HEAT_2  8 lendpdpevrraairaLgrignp.........ealpaLvell.ededpavRraa 51
                +  ++++ +r++++++  +  ++          +lp+L+e + + +d++ Rra+
  KKY14712.1 16 ALLSSSTSLRINTLEEVRQRLDQrdastkevqALLPLLLETIpRYSDRNSRRAV 69
                335789999999999999544443444444434477777777666777777776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7
      HEAT_2  16 vrraairaLg..rignpealpaLvelled.ed.pavRraaaeaLg 56 
                 v+ ++i +L   + +n+e++ +L ++++  +d + +  + a aLg
  KKY14712.1 346 VAEQVIASLKasKPANTELRGLLARVIQAfPDsAKISSMTAGALG 390
                 444555555533334555555555555443331455555555555 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1.4
      HEAT_2  34 paLvell.ededpavRraaaeaLg........aigd...pealpaLkellddddd 76 
                 ++L+ l+ +  +p vR++a ++L+        +i     +  +++L++l+++++d
  KKY14712.1 583 AYLFILAaNGISPQVRAEAGKSLSssyldapgQISKavvKGIWQWLEHLALSTKD 637
                 5555555344578899999999963222211133212235567777777766665 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 4.9
      HEAT_2  26 rignpealpaLvell..ede.dpavRraaaeaLgaig...dpealpaL 67 
                 + +  e+++ ++++   +d+ +   R aa++a+++++    +e+lp+ 
  KKY14712.1 713 KAHAAELFENITKIFdaRDAfNISMRTAACDAAAELAfvsPEESLPLI 760
                 555555555555555333332356899999999988655356677765 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 2.6
      HEAT_2    2 daLlqalendpdpevrraairaL 24  
                  ++Ll+ + ++pd+ v++a+++++
  KKY14712.1 1068 NVLLAGA-TSPDDSVKIAVLQSI 1089
                  4566666.666666666666665 PP

  == domain 6  score: 6.7 bits;  conditional E-value: 0.01
      HEAT_2   37 vellededpavRraaaeaLgai.g.....dpealpaLkellddddddvv 79  
                    +l+ +d+ +Rr+aa+aL a+ +     +p+++++L+e + d+++++v
  KKY14712.1 1139 MGYLDAPDAGTRRTAAKALLALvKqypsvLPQVIRFLEEKYVDESKPLV 1187
                  5567889**********99766433344459999999999888887765 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 1.7
      HEAT_2   40 lededpavRraaa...eaLgaigdpealpaLkelld 72  
                  l d +p+vR + +   ++L+ ++ +eal+ L +++ 
  KKY14712.1 1240 LADRHPRVRDEMVaagTSLVTLRGKEALEPLMKMFE 1275
                  467889999877733357888889999999988875 PP

  == domain 8  score: 8.4 bits;  conditional E-value: 0.0031
      HEAT_2    2 daLlqalendpdpevrraairaLg....rignpea...lpaLvellededpavRraaaeaLg.........aigdpealpaLkellddddd 76  
                  + Ll+ l + p++ v++a++ +L       ++++a   ++++v+l ++++ a Rr aa  L+         a+++ ++  +Lk ++ ++++
  KKY14712.1 1318 ERLLATL-STPSESVQYAVAGCLTplvhLARSETAtfiQKMIVQLTTNKSYAARRGAAYGLAglvagrgitALKEYRVMTSLKSAAENKKS 1407
                  6799999.99**************9885445555578899999999***************744444444455667777777777776665 PP

  == domain 9  score: 20.5 bits;  conditional E-value: 5.2e-07
      HEAT_2    1 ldaLlqalendpdpevrraairaLg.......rignpealpaLvellededpavRraaaeaLgaig..........dpealpaLkellddddddvvR 80  
                  l++Ll++   d++ +vr a +++         ++g +++lp L+e l+ + ++  + a++ Lga++          +p+ +p L+  l+ d++ +vR
  KKY14712.1 1437 LPQLLALF-GDASADVREACLDTAKqcfsslsSFGVKQILPQLLEGLDESQWRSKKGACDLLGAMAyldpqqlavsLPDIIPPLTGVLN-DTHKEVR 1531
                  57888888.9999999999999999777777678888**************************9955545555554799*******996.5667779 PP

      HEAT_2   81 eaAaeaL 87  
                  ++A ++L
  KKY14712.1 1532 ASANRSL 1538
                  9999888 PP

  == domain 10  score: 21.6 bits;  conditional E-value: 2.4e-07
      HEAT_2    1 ldaLlqalendpdpevrraairaLg......rignp.......ealpaLvellededpavRraaaeaLgaigd.......pealpaLkelldddddd 77  
                  l++Ll+ l + + +  ++ a++ Lg          +       +++p L+ +l+d++ +vR+ a ++L ++gd       ++ +++L+ +l d+++ 
  KKY14712.1 1475 LPQLLEGL-DESQWRSKKGACDLLGamayldP---QqlavslpDIIPPLTGVLNDTHKEVRASANRSLQRFGDvisnpeiKSLVDILLSALSDPTKH 1567
                  6899****.99**************7764440...2555555599***************************7666544444677777777776654 PP

  == domain 11  score: 14.2 bits;  conditional E-value: 4.7e-05
      HEAT_2   15 evrraairaLgrignp.......ealpaLvell....ededpavRraaaeaLg....aigd...pealpaLkellddddddvvReaAaeaL 87  
                  +++r+a + +g++++        + lp+Lv  l     d+ pa+R++a +aLg    ++g+   p+ +p+L   l++++ +  R  +a+aL
  KKY14712.1 1605 ATKRKASQIIGSLAHLtdkkdlsSHLPILVAGLraasVDPVPATRATASKALGslveKLGEdalPDLIPSLMSNLRSETGAGDRLGSAQAL 1695
                  56677777777444433334444445555554433227899************5444446334499*************999999999998 PP

  == domain 12  score: 4.7 bits;  conditional E-value: 0.045
      HEAT_2   19 aairaLgrignpealpaLvellededpavRraaae 53  
                  +++  Lg+ + +e+lp++++ +++++p vR+   +
  KKY14712.1 1697 EVLAGLGTTRLEETLPTILQNVSSTKPTVREGFMT 1731
                  577889999999******************87655 PP

  == domain 13  score: 2.6 bits;  conditional E-value: 0.2
      HEAT_2   31 ealpaLvellededpavRraaaeaLg....aigdpe...alpaLkellddddddvvReaAa 84  
                  +++p +++ l d+ +a+R++a +a       +++++    lp L++ l+dd+ +++R +++
  KKY14712.1 1750 KIIPPILSGLADDVEAIRETALRAGRllvkNFATKAidlLLPELQRGLADDS-YRIRLSSV 1809
                  6889999999999999999999975422233444333336788888887655.44566555 PP

  == domain 14  score: -0.3 bits;  conditional E-value: 1.6
      HEAT_2   40 lededpavRraaae 53  
                    d++  vR aa+ 
  KKY14712.1 1862 RCDTSGLVRTAAVA 1875
                  23344444444442 PP

  == domain 15  score: 24.0 bits;  conditional E-value: 4.4e-08
      HEAT_2    1 ldaLlqalendpdpevrraairaLg...........rignpealpaLvellededpavRraaaeaL.......gaigdpealpaLkellddddddvv 79  
                  l+ L + l+++ d ++r+ +++aL            + ++++++  ++ +l d+d++vR+aaaea        g+ + +++lp L+ ll+++ +++ 
  KKY14712.1 1933 LPELEEGLQSSTDVDTRQGICIALRelivaaapeslEDHEKTLISVVRTALVDPDSDVREAAAEAFdslqqilGKRAVDQVLPYLLSLLQNEAEAEN 2029
                  578999*******************877766665433344477999999**************97733333334445799**********9988875 PP

      HEAT_2   80 ReaAa 84  
                    aA+
  KKY14712.1 2030 ALAAL 2034
                  55554 PP

  == domain 16  score: 3.9 bits;  conditional E-value: 0.077
      HEAT_2    1 ldaLlqalendpdpevrraairaLg..rignpealpaLvell.ededpavRraaaeaLgaigdpealpaL 67  
                  l++Ll++l+n ++ e + aa+ +L   + +   +lp L++ l + + +a  + a  +L++++ p+  + L
  KKY14712.1 2014 LPYLLSLLQNEAEAENALAALLTLLteSTRANIILPNLIPTLlSPPITAFNAKALASLAEVAGPAMTRRL 2083
                  6899****99999999998888887554444556******6647788*************9988765555 PP

  == domain 17  score: 2.2 bits;  conditional E-value: 0.26
      HEAT_2   10 ndpdpevrraairaLg..........rignpealpaLvellededpavRraaaeaLgaigd 60  
                  +++d+  r+ a   L+          +  n+++++ L+   +d d +v +aa +aL ++ +
  KKY14712.1 2135 KHEDHRKRAIADYHLAtffsnatvdySRYNQDLIRVLLLSFNDGDNEVIKAAWTALNQLTS 2195
                  566666666666666655555444433446688888888889**************99865 PP

  == domain 18  score: 12.7 bits;  conditional E-value: 0.00014
      HEAT_2    3 aLlqalendpdpevrraairaLgrignp..........ealpaLvellededpavRraaaeaLgaigdpealpaLkellddddddvvReaAaeaLa 88  
                  +L+ ++ +  + +v+ a++ +L ++ ++          +++++++++l                               +d+++d+ R +Aa+aL+
  KKY14712.1 2280 PLIRVI-SERSVDVKCAILTTLNQLLEKiplfvkpflpQLQRTFTKCL-------------------------------ADPSSDLLRSRAAKALG 2343
                  344444.44555555555555554444333444444445555555555...............................55555555555555543 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       6.1   5.4e+03      82     159 ..      29     108 ..      22     111 .. 0.58
   2 ?   -2.4   0.0       4.7   4.2e+03      57     106 ..     305     356 ..     300     381 .. 0.68
   3 !    6.5   0.0    0.0086       7.7      67     155 ..    1240    1334 ..    1213    1340 .. 0.74
   4 ?    5.8   0.0     0.014        13      59     115 ..    1515    1571 ..    1471    1595 .. 0.76
   5 ?    3.6   0.0     0.071        63      24     107 ..    1594    1682 ..    1588    1727 .. 0.81
   6 !    7.5   0.0    0.0044         4      15      80 ..    1744    1810 ..    1739    1826 .. 0.86
   7 ?    0.6   0.0      0.58   5.2e+02      23     107 ..    1855    1943 ..    1850    1971 .. 0.64
   8 !   14.1   0.2   4.1e-05     0.037      37     145 ..    1948    2055 ..    1911    2058 .. 0.76
   9 ?   -1.8   0.0       3.1   2.7e+03      81     137 ..    2067    2144 ..    2057    2159 .. 0.57
  10 ?    1.3   0.1      0.34     3e+02      57      97 ..    2165    2206 ..    2148    2217 .. 0.79
  11 ?    0.6   0.0      0.58   5.2e+02      27     103 ..    2323    2399 ..    2291    2420 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.1
        Cnd1  82 lteisek..senaiynllpdiisklsdalne.csewgqitilefLlsyipkdkqeaeslveklcprlqhansavvlaaikv 159
                 l+e+ ++  + +a  + ++ ++  l++ +    ++++++ + +++ +   k +  a  +v+ l + l+++ s+ v+a++ +
  KKY14712.1  29 LEEVRQRldQRDASTKEVQALLPLLLETIPRySDRNSRRAVQNCIRTLLRKPEF-AAPIVKSLGNVLKAESSKNVIATTNA 108
                 555555552222333333333333333333335566777777777777777777.88888888888888888888877765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.7
        Cnd1  57 kgflselaklleDenprVvanalaalteisek..senaiynllpdiisklsd 106
                 k++ + l++ l+ +np + + a  +++ ++++  ++ ++ ++  ++i +l++
  KKY14712.1 305 KNLAKPLLSSLTSTNPIIKNGACQSFESLLSRchEGPILDKVAEQVIASLKA 356
                 4566667777888888888888888888888874333444455556666664 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0086
        Cnd1   67 leDenprVvanalaalteisekse....naiynllpdiisklsdalne..csewgqitilefLlsyipkdkqeaeslveklcprlqhansavvla 155 
                  l D +prV++  +aa t + +  +    +++++++ +++ + ++a +e  + +++ ++ + +++++ ++ ++    ++e+l + l++  ++v+ a
  KKY14712.1 1240 LADRHPRVRDEMVAAGTSLVTLRGkealEPLMKMFEQTLESANKASKEadLVNEAVVVLYGSIARHLDSGDERVVAVIERLLATLSTPSESVQYA 1334
                  8999******99999888887744123433444444444444444444558889999****************************9999988765 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.014
        Cnd1   59 flselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewg 115 
                  ++  l   l+D++++V+a+a  +l+   +  +n+ +++l di+ + +++ ++ +e++
  KKY14712.1 1515 IIPPLTGVLNDTHKEVRASANRSLQRFGDVISNPEIKSLVDILLSALSDPTKHTEEA 1571
                  677788899*******************99778888888887655555555555554 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.071
        Cnd1   24 epLrkrLkDedpyVRktaaiv..vakL.ilndmvkekg.flselaklleDenprVvanalaalteisek.senaiynllpdiisklsda 107 
                    L+++L+D++++ Rk   i+  +a+L  ++d+      +++ l+ +  D+ p  +a a  al  + ek +e+a+  l p+++s+l ++
  KKY14712.1 1594 RILERGLSDRSATKRKASQIIgsLAHLtDKKDLSSHLPiLVAGLRAASVDPVPATRATASKALGSLVEKlGEDALPDLIPSLMSNLRSE 1682
                  56899**********99877555999944455666666999****************************99999999*****9999863 PP

  == domain 6  score: 7.5 bits;  conditional E-value: 0.0044
        Cnd1   15 vpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekg.flselaklleDenprVvanala 80  
                  + + + ++++p+ ++L D+ + +R+ta+ +   L++n   k  + +l el++ l D++ r++ +++ 
  KKY14712.1 1744 FATYLNKIIPPILSGLADDVEAIRETALRAGRLLVKNFATKAIDlLLPELQRGLADDSYRIRLSSVE 1810
                  5667889999*****************999888899999999999999******9999999877665 PP

  == domain 7  score: 0.6 bits;  conditional E-value: 0.58
        Cnd1   23 vepLrkrLkDedpyVRktaaivvakL.ilndmvkekg.flsel.aklleDenprVvanalaalteisek.senaiynllpdiisklsda 107 
                  ++ L+ +  D++  VR  a+ v   L  ++ + ke    ls+l  + l  +n +    a +al e+ +k +e  ++ llp++   l+++
  KKY14712.1 1855 LSSLYICRCDTSGLVRTAAVAVWKALvASPRTLKELVpTLSQLiISRLASSNMEQKVIASNALGEMIRKaGEGVLLALLPELEEGLQSS 1943
                  67788888899999998888888888766667766555444331455666666666666777777777755566666667666666654 PP

  == domain 8  score: 14.1 bits;  conditional E-value: 4.1e-05
        Cnd1   37 VRktaaivvakL...ilndmvkekg..flselaklleDenprVvanalaalteisek.senaiynllpdiisklsdalnecsewgqitilefLlsyi 127 
                   R+   i++ +L     ++  ++ +  ++s ++++l D+++ V++ a  a+  +++  +++a+ ++lp ++s l+      +e++  + l +Ll+  
  KKY14712.1 1948 TRQGICIALRELivaAAPESLEDHEktLISVVRTALVDPDSDVREAAAEAFDSLQQIlGKRAVDQVLPYLLSLLQ------NEAEAENALAALLTLL 2038
                  566666777777554455555544445******************************999999999999999999......5777777778888877 PP

        Cnd1  128 pkdkqeaeslveklcprl 145 
                  +++++ a+ ++ +l+p l
  KKY14712.1 2039 TESTR-ANIILPNLIPTL 2055
                  77777.777777777665 PP

  == domain 9  score: -1.8 bits;  conditional E-value: 3.1
        Cnd1   81 alteiseksenaiynllpdiisklsd............alne...........csewgqitilefLlsyipkdkqeaesl 137 
                  al  ++e ++ a+ + lp+ii++l+d            +               + +g +t+++++l  ++ +++    +
  KKY14712.1 2067 ALASLAEVAGPAMTRRLPSIINNLVDnivsaktpelksD--LnaalnavlssvDEYDGLNTVMSVVLGLVKHEDHRKRAI 2144
                  555666665566677777777777764443333333221..022333355553334666777777777777666655555 PP

  == domain 10  score: 1.3 bits;  conditional E-value: 0.34
        Cnd1   57 kgflselaklleDenprVvanalaalteisek.senaiynll 97  
                  ++++  l+   +D +++V++ a +al+++ ++  ++++ +l+
  KKY14712.1 2165 QDLIRVLLLSFNDGDNEVIKAAWTALNQLTSRlRKEEMESLV 2206
                  55888888999******************9997555555544 PP

  == domain 11  score: 0.6 bits;  conditional E-value: 0.58
        Cnd1   27 rkrLkDedp.yVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisk 103 
                  +k+L D+++   R  aa ++  Li+ +  ++  +++el +  + +++ V +  l  l+e+ +k+++++ +  ++ i  
  KKY14712.1 2323 TKCLADPSSdLLRSRAAKALGTLITLTP-RVDPLIAELVTGSKTSDEGVKNAMLKGLQEVVSKAGSNMSETSREAILG 2399
                  4677777541567777777777765543.4556777777777777777777777777777777555555555555544 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.17   1.5e+02     103     138 ..     128     164 ..     126     188 .. 0.86
   2 !    5.4   0.1    0.0062       5.5     106     198 ..     257     355 ..     253     493 .. 0.81
   3 !   23.2   0.0   2.5e-08   2.3e-05     111     502 ..    1130    1561 ..    1126    1572 .. 0.79
   4 ?    1.8   0.0     0.079        71     113     175 ..    1749    1811 ..    1744    1815 .. 0.89
   5 !    5.3   2.4    0.0068       6.1     132     313 ..    1870    2057 ..    1858    2188 .. 0.55
   6 ?   -2.4   0.0       1.5   1.3e+03     265     298 ..    2274    2307 ..    2255    2315 .. 0.75
   7 !    5.5   0.0    0.0057       5.1     111     298 ..    2314    2545 ..    2297    2576 .. 0.62

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.17
                 HCCC--CCCHHHHHHHHHHHHT.-SSHHHHHHHHHHH CS
   Adaptin_N 103 Lssirvpelaedlapaikkllk.drspyvrkkAalai 138
                 Ls+   p+l+ + a+ ++k+l+  ++p+v k+A++ +
  KKY14712.1 128 LSKTVIPDLSNAAAKSLEKCLHaTSRPSVAKSALVVA 164
                 7888889***************66778******9976 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0062
                 C--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCC...CHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH..HCCCCCCC.HHHHHHHCCHH CS
   Adaptin_N 106 irvpelaedlapaikkllkdrspyvrkkAalailklykk...dpdllrkqlveeikellsdkdpgvvlaAvalleei..kkndrlll.kllpklvrrLc 198
                 + ++++ ed++p  +k++  +  +v  + + ++lk + k    +++++k+l++ + ++l++++p+++  A + +e++  ++++   l k++++ +  L+
  KKY14712.1 257 VDQSQVNEDILPSFEKAILRSPEVVLGAVLPSLLKSIPKsfdVSEAVSKNLAKPLLSSLTSTNPIIKNGACQSFESLlsRCHEGPILdKVAEQVIASLK 355
                 5667888999999999999888899999999999999886666777888899999*********************99999998877777777766665 PP

  == domain 3  score: 23.2 bits;  conditional E-value: 2.5e-08
                  CHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SS.H.......................HHHHHHHHHHHHHHCCC CS
   Adaptin_N  111 laedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkd.p.......................gvvlaAvalleeikknd 183 
                  + edl  +++  l  +++  r++Aa a+l+l+k++p+ l++ ++  ++e+  d++ p                       + +++A+ +l ++ ++ 
  KKY14712.1 1130 VNEDLIFDMMGYLDAPDAGTRRTAAKALLALVKQYPSVLPQ-VIRFLEEKYVDESkPlvpkkdkygiiqkgtlvdhweirSGIASAFGVLSKV-YQT 1224
                  567888899999999************************88.59999999855552699*********************999**********.999 PP

                  CCCCHHHHHHHCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH....HHHHHHHCGGCG..CSSCHHHHHHHHHCC.....HCCCCSTHHHCCHHC CS
   Adaptin_N  184 rlllkllpklvrrLcnllteldpwlqvkiiklltrlarqepeersk..kellesllnllq..ssnnaVlletvnliv.....elapknelivlavna 271 
                  ++l++l++ l+++    l +  p    +++   t+l+    +e+ +   +++e++l+  +  s+ + ++ e+v +++     +l++ +e +v+++++
  KKY14712.1 1225 DSLSQLMKFLIEH--GPLADRHPRVRDEMVAAGTSLVTLRGKEALEplMKMFEQTLESANkaSKEADLVNEAVVVLYgsiarHLDSGDERVVAVIER 1319
                  9999999999999..3469999999999**9999999988877755556677777777779977778888888888888888*************** PP

                  HHHHHHSSCCTCHHHH...HCHHHHHHHHXXTTTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHH.....HHHHHHHHTTSSXXHH..HHH CS
   Adaptin_N  272 Lvrllsskdenlryva...LrtllkivkkepkavqhldlkifllktdddvsirlkaldlllklvdesNvke.....ivkeLkkyvkevaded..fks 358 
                  L  +ls++ e+++y++   L+ l++++ +e +a + ++++++l   +++   r+ a   l +lv  + + +     +++ Lk+ +++++  +    +
  KKY14712.1 1320 LLATLSTPSESVQYAVagcLTPLVHLARSE-TATFIQKMIVQLTT-NKSYAARRGAAYGLAGLVAGRGITAlkeyrVMTSLKSAAENKKSVEqrQGA 1414
                  ***************934344466666666.99999999999777.999999999999999999999998755666788888877444444433333 PP

                  HHHHHHHH..HHHHSCCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTS.TTCHHHHCCTCCGXXSHHHHHHHHHHHHHTTTTXTT.... CS
   Adaptin_N  359 klvkaIgr..laekfatdaewvldvllellslsgesvkdeivevirdliqkvpelh.eeiiekLaellekieseearaaaiWllGeygelvsn.te. 450 
                    ++ + +  l+ +f++ + ++l+ ll l  +++  v++++++  ++ ++  ++   + i+ +L+e l++ +    +++a  llG  + l ++    
  KKY14712.1 1415 LFAYELFSliLGRTFEPYIIHILPQLLALFGDASADVREACLDTAKQCFSSLSSFGvKQILPQLLEGLDESQ-WRSKKGACDLLGAMAYLDPQqLAv 1510
                  444444441145667888888888888888888888888888888888877766531445667777777643.346778888888888888875457 PP

                  .HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THXHHHHHHHHHH CS
   Adaptin_N  451 sasdllrslaekfvlesekvklqiltalvKlyltspdketqekliqlvlsla 502 
                  s++d++  l  ++ +++++v++++  +l++++++ ++ e++ +l++++ls +
  KKY14712.1 1511 SLPDIIPPLTGVLNDTHKEVRASANRSLQRFGDVISNPEIK-SLVDILLSAL 1561
                  88999999999999999999999999999999888877775.7777776655 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.079
                  HHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHH CS
   Adaptin_N  113 edlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAval 175 
                   ++ p i + l d+   +r +A+ a   l+k+ +    + l++e++  l+d+++++ l+ v l
  KKY14712.1 1749 NKIIPPILSGLADDVEAIRETALRAGRLLVKNFATKAIDLLLPELQRGLADDSYRIRLSSVEL 1811
                  678999999***********************999975559*************999998876 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.0068
                  HHHHHHHHHCCCCCHHCCCCCHHHHHHHCT....T-SSHHHHHHHHHHHHHH..HCCCCCCCHHHHHHHCCHHHHHHCS-HHHHHHHHHHHCC---S CS
   Adaptin_N  132 kkAalailklykkdpdllrkqlveeikell....sdkdpgvvlaAvalleei..kkndrlllkllpklvrrLcnllteldpwlqvkiiklltrlarq 222 
                  ++Aa+a+ k + ++p  l++ lv+ + +l+    +++++  ++ A ++l e+  k  +  ll llp+l + L+  + + +  ++++ ++ l   a+ 
  KKY14712.1 1870 RTAAVAVWKALVASPRTLKE-LVPTLSQLIisrlASSNMEQKVIASNALGEMirKAGEGVLLALLPELEEGLQSSTDVDTRQGICIALRELIVAAAP 1965
                  56666666666665555544.3444444333333777777777777777776633333343377777777777776666667777777666555554 PP

                  SHHHH..HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST..HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHXXTT.TTTTTCCCCSXX CS
   Adaptin_N  223 epeerskkellesllnllqssnnaVlletvnlivelapkne..livlavnaLvrllsskdenlryvaLrtllkivkkepka.vqhldlkifllk 313 
                  e  e+ +k l+  + + l      V  ++++++ +l++     ++ ++   L +ll+++ e     aL +ll++++ +++a +  ++l+  ll+
  KKY14712.1 1966 ESLEDHEKTLISVVRTALVDPDSDVREAAAEAFDSLQQILGkrAVDQVLPYLLSLLQNEAE--AENALAALLTLLTESTRAnIILPNLIPTLLS 2057
                  5555534566666666666555555555555555555555444555555555555555544..3445555555554443321335555555555 PP

  == domain 6  score: -2.4 bits;  conditional E-value: 1.5
                  HHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHX CS
   Adaptin_N  265 ivlavnaLvrllsskdenlryvaLrtllkivkke 298 
                  ++++   L+r +s++   ++ + L+tl+++++k 
  KKY14712.1 2274 VTQITGPLIRVISERSVDVKCAILTTLNQLLEKI 2307
                  5666777888888888889999999998888875 PP

  == domain 7  score: 5.5 bits;  conditional E-value: 0.0057
                  CHHHHHHHHHHHHT-SSH.HHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH....HCCCCCCC.HHHHHHHCCHHHHH CS
   Adaptin_N  111 laedlapaikkllkdrsp.yvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleei....kkndrlll.kllpklvrrLcnll 201 
                   +++l ++ +k+l d+s+  +r+ Aa a+ +l+ ++p    + l+ e++   + +d gv+ a ++ l+e+      n+ +++ +++  l+       
  KKY14712.1 2314 FLPQLQRTFTKCLADPSSdLLRSRAAKALGTLITLTPRV-DP-LIAELVTGSKTSDEGVKNAMLKGLQEVvskaGSNMSETSrEAILGLIDSQA--- 2405
                  578999999*********9*******************9.45.7999999999999**************753322222222445444444422... PP

                  HCS-HHHHHHHHHHHCC---SSHHHH..................................HHHHHHHCGGCG........CSSCHHHHHHHHHCC.. CS
   Adaptin_N  202 teldpwlqvkiiklltrlarqepeer..............................sk..kellesllnllq........ssnnaVlletvnliv.. 256 
                  +  ++ + v++ +l+  l+++ p+ +                              +   ++ l ++ n ++        + ++   l++ +l+   
  KKY14712.1 2406 GADSDTMGVTMARLFGGLIKVLPPTSaltliktrvlvnppnktsvlalnavladapDAliNDHLIETANTIRlgmtsspgTIQDNCTLAAGKLLLsp 2502
                  5666666666666666666666666633333333333333333333333222222200112222222222233443333333333333333333355 PP

                  HCCCCSTHHHCCHHCHHHHHH.SSCCTCHHHHHCHHHHHHHHX CS
   Adaptin_N  257 elapknelivlavnaLvrlls.skdenlryvaLrtllkivkke 298 
                  ++++++++++ +v++L + +s  ++  lr ++L  + +++ ++
  KKY14712.1 2503 NIDSSSPILQPLVTVLSESISpGHPIDLRRLSLVVIRTVSRHK 2545
                  5566666666666666666666666666666666666666665 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.4      0.96   8.6e+02      89     185 ..      43     148 ..      12     152 .. 0.65
   2 ?   -2.6   0.0       3.7   3.3e+03      92     126 ..     304     338 ..     295     358 .. 0.71
   3 ?    2.3   0.0      0.11     1e+02      70     195 ..    1410    1454 ..    1351    1485 .. 0.57
   4 !    8.1   0.0     0.002       1.8      72     194 ..    1492    1609 ..    1470    1614 .. 0.81
   5 ?    2.6   0.0     0.093        84      44     215 ..    1630    1789 ..    1611    1801 .. 0.69
   6 !   10.5   0.0   0.00036      0.33     142     211 ..    1944    2009 ..    1866    2042 .. 0.78
   7 !   10.5   0.0   0.00035      0.32       5     161 ..    2232    2385 ..    2228    2404 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.96
     CLASP_N  89 dpmveillptLlkllgdtKkiisqna.nqalaallsnasfsprilqvlsval...qdKnvqpRe...ysaiwLkilltrfeshkskleasl...lldli 177
                  + v++llp+Ll+ +    ++ s  a ++++ +ll++ +f   i++ l + l   + Knv + +   + ++w ++++++ + +  +l+++    l +++
  KKY14712.1  43 TKEVQALLPLLLETIPRYSDRNSRRAvQNCIRTLLRKPEFAAPIVKSLGNVLkaeSSKNVIATTnafVILEWASLATQEAA-QDPALSKTVipdLSNAA 140
                 3448999999999999999998888757899****9999999997776665412257998876511144667777777666.55555555523334666 PP

     CLASP_N 178 ekslkkgl 185
                  ksl k+l
  KKY14712.1 141 AKSLEKCL 148
                 67777776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.7
     CLASP_N  92 veillptLlkllgdtKkiisqnanqalaallsnas 126
                 +++l + Ll  l +t  ii + a q++++lls ++
  KKY14712.1 304 SKNLAKPLLSSLTSTNPIIKNGACQSFESLLSRCH 338
                 45566667777788888888888888888888776 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.11
     CLASP_N   70 sstgchllkela.iqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnasfsprilqvlsvalqdKnvqpReysaiwLkilltrfeshk 165 
                    +g ++  el+  +l++ ++p++ ++lp Ll l gd    +                                                       
  KKY14712.1 1410 QRQGALFAYELFsLILGRTFEPYIIHILPQLLALFGDASADV------------------------------------------------------- 1451
                  333444433333134455566666666666666666554444....................................................... PP

     CLASP_N  166 skleasllldliekslkkgleDanptVRet 195 
                                             Re+
  KKY14712.1 1452 ---------------------------REA 1454
                  ...........................443 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.002
     CLASP_N   72 tgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnasfsprilqvlsvalqdKnvqpReysaiwLkilltrfeshkskl 168 
                   +c ll  +a    +ql+ ++  ++p L  +l dt k ++++an +l+ +   +s +p+i +++ ++l+  +  ++ +  + L  l++ +   +++l
  KKY14712.1 1492 GACDLLGAMAYLDPQQLAVSLPDIIPPLTGVLNDTHKEVRASANRSLQRFGDVIS-NPEIKSLVDILLSALSDPTKHTE-EALDALIKVSF--THYL 1584
                  68********************************************999888888.88887777777777666666655.44455555544..5777 PP

     CLASP_N  169 easllldliekslkkgleDanptVRe 194 
                  +a + l l++ +l +gl+D + t R+
  KKY14712.1 1585 DAPS-LALVVRILERGLSDRSATKRK 1609
                  8777.458999999999998877666 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.093
     CLASP_N   44 veelleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnasfsprilqvlsvalq 140 
                   + l+++l+    a ++ + + r t s+++++l+++l +   ++l  ++ +l+++L    g+   + s++a   + a l  + +++ + ++l++ ++
  KKY14712.1 1630 LPILVAGLR---AASVDPVPATRATASKALGSLVEKLGE---DALPDLIPSLMSNLRSETGAGDRLGSAQALSEVLAGLGTTRLEETLPTILQNVSS 1720
                  566677777...777777788888888888877776643...3466667777888888888888888888777777777777766666666666666 PP

     CLASP_N  141 dKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfweffkvwPsrAksll 215 
                   K ++ Re  +++   l   f+   +++     l+ i + + +gl+D   ++Reta  +   + k++ ++A  ll
  KKY14712.1 1721 TK-PTVREGFMTLFIFLPACFG---NSFATY--LNKIIPPILSGLADDVEAIRETALRAGRLLVKNFATKAIDLL 1789
                  65.6677777776666666666...333333..367778888888888888888887777777777777777666 PP

  == domain 6  score: 10.5 bits;  conditional E-value: 0.00036
     CLASP_N  142 KnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfweffkvwPsrA 211 
                    v +R+  +i L+ l+   +   ++le ++  +++  +++ +l D+++ VRe+a ++f ++ ++  +rA
  KKY14712.1 1944 TDVDTRQGICIALRELIVAAA--PESLEDHE--KTLISVVRTALVDPDSDVREAAAEAFDSLQQILGKRA 2009
                  557889999999999999988..88999999..889***********************99998887777 PP

  == domain 7  score: 10.5 bits;  conditional E-value: 0.00035
     CLASP_N    5 aeellaafegketelnwdaReknilklrslikgnvpedaveelleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptLlk 101 
                  ++ +l++f +   +  +d+R ++ + + ++i    pe+  + ++++   l+  i++   ++  ++ +t+ +ll+++    k+ l ++ + + ++L +
  KKY14712.1 2232 INAILPIFLQGLMNGTVDQRTQAAMAISEIIDRTSPESLKPFVTQITGPLIRVISERSVDVKCAILTTLNQLLEKIPLFVKPFLPQLQRTFTKCLAD 2328
                  6778889988899999********************999999999999***************************9999888777777777777777 PP

     CLASP_N  102 llgdtKkiisqnanqalaallsnasfsprilqvlsvalqdKnvqpReysaiwLkilltrf 161 
                    +d   + ++ a+ al +l++ ++    ++  l ++++      +  +++ L+ ++++ 
  KKY14712.1 2329 PSSD---LLRSRAAKALGTLITLTPRVDPLIAELVTGSKTSDEGVKNAMLKGLQEVVSKA 2385
                  6665...56666666666666665533333444444444444445555555555555555 PP

>> ParcG  Parkin co-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.2   1.9e+03      79     112 ..     451     484 ..     428     490 .. 0.79
   2 !    8.4   0.0    0.0024       2.1      33     115 ..    1468    1546 ..    1457    1571 .. 0.83
   3 ?    1.0   0.0      0.44   3.9e+02      35      92 ..    1625    1686 ..    1617    1703 .. 0.79
   4 ?   -2.1   0.0       4.1   3.7e+03      74     110 ..    1744    1780 ..    1727    1797 .. 0.75
   5 ?    2.9   0.0      0.12   1.1e+02      49     125 ..    1904    1975 ..    1896    1988 .. 0.78
   6 ?    3.4   0.0     0.084        76      39     128 ..    1932    2023 ..    1929    2034 .. 0.70
   7 ?   -2.7   0.0       6.3   5.6e+03      81     126 ..    2167    2213 ..    2137    2217 .. 0.75
   8 !   21.6   0.0   2.1e-07   0.00018      38     155 ..    2234    2346 ..    2230    2385 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.2
       ParcG  79 pklilplk..eaLntrdeeviesaLkvlqklvkase 112
                  +l + lk  e +  ++ee+++s+L++lq +   se
  KKY14712.1 451 GQLLWTLKdrEEVFETNEEIFKSVLQTLQSV--FSE 484
                 577777752256778899**********998..444 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0024
       ParcG   33 kLdydalLplffdGlretkhpyrflategikdllea...ageekilpvlpklilplkeaLntrdeeviesaLkvlqklvkaselig 115 
                  ++  +++Lp +++Gl e++      +++g+ dll a      +++   lp +i pl   Ln +++ev +sa + lq++   +++i+
  KKY14712.1 1468 SFGVKQILPQLLEGLDESQ----WRSKKGACDLLGAmayLDPQQLAVSLPDIIPPLTGVLNDTHKEVRASANRSLQRF---GDVIS 1546
                  5567899********9965....5578888888888777788999******************************999...55554 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.44
       ParcG   35 dydalLplffdGlretkh.p...yrflategikdlleaageekilpvlpklilplkeaLntr 92  
                  d +  Lp+++ Glr  +  p    r+ a +++  l+e+ ge+ + +++p l+  l++   + 
  KKY14712.1 1625 DLSSHLPILVAGLRAASVdPvpaTRATASKALGSLVEKLGEDALPDLIPSLMSNLRSETGAG 1686
                  567789999***99876413334688999999999999999999999999999999876555 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 4.1
       ParcG   74 ilpvlpklilplkeaLntrdeeviesaLkvlqklvka 110 
                    + l+k+i p+ + L    e++ e+aL++ + lvk 
  KKY14712.1 1744 FATYLNKIIPPILSGLADDVEAIRETALRAGRLLVKN 1780
                  5667888888888888888888888888887777654 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.12
       ParcG   49 etkhpyrflategikdlleaageekilpvlpklilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrql 125 
                   ++   +++a +++ +++++age  +l +lp+l  +l++  +   ++ i+ aL+ l  +v a     e+L  + ++l
  KKY14712.1 1904 SSNMEQKVIASNALGEMIRKAGEGVLLALLPELEEGLQSSTDVDTRQGICIALREL--IVAA---APESLEDHEKTL 1975
                  55667789************999999************999999999999999877..4333...345555555555 PP

  == domain 6  score: 3.4 bits;  conditional E-value: 0.084
       ParcG   39 lLplffdGlre.tkhpyrflategikdlleaageekilpvlpklilplkeaLntrdeeviesaLkv...lqklvkaseligeaLvpyyrqlLpv 128 
                  lLp + +Gl+  t+ + r     ++++l+ aa+ e++ +    li  +++aL   d++v e+a ++   lq++   ++   ++  py+  lL+ 
  KKY14712.1 1932 LLPELEEGLQSsTDVDTRQGICIALRELIVAAAPESLEDHEKTLISVVRTALVDPDSDVREAAAEAfdsLQQI--LGKRAVDQVLPYLLSLLQN 2023
                  5666667765413445555556667778888888888888899***********9999987765551115555..5666667788999999875 PP

  == domain 7  score: -2.7 bits;  conditional E-value: 6.3
       ParcG   81 lilplkeaLntrdeeviesaLkvlqklvk.aseligeaLvpyyrqlL 126 
                  li  l   +n  d+evi++a ++l++l +   +   e+Lv   rq+L
  KKY14712.1 2167 LIRVLLLSFNDGDNEVIKAAWTALNQLTSrLRKEEMESLVISTRQVL 2213
                  66677777888999999999999999943123334455665566665 PP

  == domain 8  score: 21.6 bits;  conditional E-value: 2.1e-07
       ParcG   38 alLplffdGlretkhpyrflategikdlleaageekilpvlpklilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvlnlfkn 134 
                  a+Lp+f++Gl++ + + r+ a ++i++++++++ e++ p + ++  pl + ++ r+ +v ++ L++l++l    e i     p++ ql  ++    +
  KKY14712.1 2234 AILPIFLQGLMNGTVDQRTQAAMAISEIIDRTSPESLKPFVTQITGPLIRVISERSVDVKCAILTTLNQL---LEKIPLFVKPFLPQLQRTFTKCLA 2327
                  79********************************************************************...566666777777777666552222 PP

       ParcG  135 krvnlgdkidyrkkknikdli 155 
                       +d +  r  k ++ li
  KKY14712.1 2328 --DPSSDLLRSRAAKALGTLI 2346
                  ..2345555555555555555 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       5.1   4.6e+03      22      60 ..    1128    1166 ..    1116    1180 .. 0.79
   2 ?   -0.2   0.0       1.7   1.5e+03      25      76 ..    1313    1361 ..    1296    1375 .. 0.80
   3 !    8.2   0.0    0.0042       3.8       2      44 ..    1410    1452 ..    1409    1466 .. 0.92
   4 ?    2.8   0.0       0.2   1.8e+02      26      89 ..    1472    1535 ..    1456    1541 .. 0.76
   5 ?    4.0   0.0     0.086        77       4      81 ..    1491    1565 ..    1488    1578 .. 0.70
   6 ?    5.4   0.0     0.031        28      17      63 ..    1740    1786 ..    1725    1818 .. 0.78
   7 !    8.0   0.0    0.0049       4.4       2      64 ..    1948    2011 ..    1947    2031 .. 0.79
   8 ?    1.9   0.1      0.37   3.3e+02      20      51 ..    2159    2190 ..    2108    2208 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 5.1
  Vac14_Fab1_bd   22 keyleeivkpvlkcfsDkdsrvRyyacEslyniakvakg 60  
                      ++ e+++  ++ +++  d+ +R +a+ +l  ++k+  +
     KKY14712.1 1128 FKVNEDLIFDMMGYLDAPDAGTRRTAAKALLALVKQYPS 1166
                     56778899999999999****************999775 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.7
  Vac14_Fab1_bd   25 leeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvkl 76  
                     +  +++ +l+++s  ++ v y ++ +l  ++  a++e  ++++++    v+l
     KKY14712.1 1313 VVAVIERLLATLSTPSESVQYAVAGCLTPLVHLARSETATFIQKMI---VQL 1361
                     55789999****************************9999888754...344 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0042
  Vac14_Fab1_bd    2 arkggligLaavaialekkikeyleeivkpvlkcfsDkdsrvR 44  
                     +r+g+l +    ++ l+++ ++y+ +i++ +l+ f D+++ vR
     KKY14712.1 1410 QRQGALFAYELFSLILGRTFEPYIIHILPQLLALFGDASADVR 1452
                     79**************************************999 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.2
  Vac14_Fab1_bd   26 eeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksgae 89  
                     ++i++ +l+ +++++ r +  ac+ l  +a    +++   l +i   l+ ++ D++++v+ +a+
     KKY14712.1 1472 KQILPQLLEGLDESQWRSKKGACDLLGAMAYLDPQQLAVSLPDIIPPLTGVLNDTHKEVRASAN 1535
                     6777778888888888888888888888888888888888888888888888888888887664 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.086
  Vac14_Fab1_bd    4 kggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsd 81  
                     kg+   L a+a    ++++  l +i++p+  +++D+ ++vR  a  sl     v+ +  +k l    d+l + ++D  
     KKY14712.1 1491 KGACDLLGAMAYLDPQQLAVSLPDIIPPLTGVLNDTHKEVRASANRSLQRFGDVISNPEIKSL---VDILLSALSDPT 1565
                     55555555555555566888899***********************99998888887665554...455566666664 PP

  == domain 6  score: 5.4 bits;  conditional E-value: 0.031
  Vac14_Fab1_bd   17 lekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevl 63  
                      +++ ++yl++i++p+l+ + D+ + +R +a  +   ++k   ++++
     KKY14712.1 1740 FGNSFATYLNKIIPPILSGLADDVEAIRETALRAGRLLVKNFATKAI 1786
                     5677899*******************998887776666666555554 PP

  == domain 7  score: 8.0 bits;  conditional E-value: 0.0049
  Vac14_Fab1_bd    2 arkggligLaavaialekk.ikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlk 64  
                     +r+g  i+L  + +a + + ++++ ++++++v +++ D ds vR  a+E++  + +++ ++++ 
     KKY14712.1 1948 TRQGICIALRELIVAAAPEsLEDHEKTLISVVRTALVDPDSDVREAAAEAFDSLQQILGKRAVD 2011
                     6889999999988888777699999************************987766665555443 PP

  == domain 8  score: 1.9 bits;  conditional E-value: 0.37
  Vac14_Fab1_bd   20 kikeyleeivkpvlkcfsDkdsrvRyyacEsl 51  
                     + ++y +++++++l +f+D d++v   a  +l
     KKY14712.1 2159 DYSRYNQDLIRVLLLSFNDGDNEVIKAAWTAL 2190
                     23445555555555555555555544444444 PP

>> TIP120  TATA-binding protein interacting (TIP20)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.19   1.7e+02      53     116 ..     354     419 ..     342     432 .. 0.81
   2 ?   -1.2   0.1       1.6   1.5e+03     127     155 ..     464     492 ..     457     500 .. 0.79
   3 ?    0.8   0.0      0.41   3.7e+02      62     112 ..    1312    1363 ..    1291    1370 .. 0.83
   4 !   13.0   0.0   7.1e-05     0.063      37     120 ..    1446    1529 ..    1443    1542 .. 0.92
   5 ?    1.2   0.0       0.3   2.7e+02      48     112 ..    1570    1639 ..    1565    1647 .. 0.74
   6 ?   -2.7   0.0         5   4.4e+03      63      84 ..    1748    1770 ..    1732    1795 .. 0.76
   7 ?   -0.8   0.0       1.3   1.1e+03      51      88 ..    1775    1812 ..    1759    1817 .. 0.73
   8 ?   -3.1   0.0       6.7     6e+03      84     114 ..    2064    2094 ..    2058    2113 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.19
      TIP120  53 lletaldrldlselldrvlaGlsDehdikllcnlmlsklvalapeevler..ldelvealrktlsk 116
                 l  +   + +l  ll+rv++++ D+  i  ++   l  l+  + +e++++  +++++++l+++++k
  KKY14712.1 354 LKASKPANTELRGLLARVIQAFPDSAKISSMTAGALGPLALKESNETAAEalVSSFCHELTTIFAK 419
                 4444556678999**************************999999988776688888888888765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.6
      TIP120 127 lEkqeelkrsvlrvvaalnsklesaevak 155
                 +E++ee+ +svl++++++ s++ s+++a+
  KKY14712.1 464 FETNEEIFKSVLQTLQSVFSEVVSTSTAQ 492
                 799***********999988777766544 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.41
      TIP120   62 dlselldrvlaGlsDe.hdikllcnlmlsklvalapeevlerldelvealrk 112 
                   + ++++r+la ls   + ++     +l+ lv+la +e+++ +++++ +l++
  KKY14712.1 1312 RVVAVIERLLATLSTPsESVQYAVAGCLTPLVHLARSETATFIQKMIVQLTT 1363
                  3788999999999888799**************************9999875 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 7.1e-05
      TIP120   37 DdGLelRKaaYetlytlletaldrldlselldrvlaGlsDe.hdikllcnlmlsklvalapeevlerldelvealrktlskklke 120 
                  D + ++R a+ +t  +++++ l++  ++++l ++l+Gl+ +    k  ++ +l  +++l+p++++ +l +++ +l+ +l+ + ke
  KKY14712.1 1446 DASADVREACLDTAKQCFSS-LSSFGVKQILPQLLEGLDESqWRSKKGACDLLGAMAYLDPQQLAVSLPDIIPPLTGVLNDTHKE 1529
                  77889*************99.999**************99978899999*******************************99887 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.3
      TIP120   48 etlytlletaldr.ld...lselldrvlaGlsDehdikllcnlmlsklvala.peevlerldelvealrk 112 
                  e l++l++ ++ + ld   l  ++  +++GlsD    k  + +++  l++l  +++++++l  lv+ lr+
  KKY14712.1 1570 EALDALIKVSFTHyLDapsLALVVRILERGLSDRSATKRKASQIIGSLAHLTdKKDLSSHLPILVAGLRA 1639
                  66777777766554332214444555999********************975155588889888887775 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 5
      TIP120   63 lselldrvlaGlsDe.hdikllc 84  
                  l++++  +l+Gl D+ + i+ ++
  KKY14712.1 1748 LNKIIPPILSGLADDvEAIRETA 1770
                  678899999***99988887654 PP

  == domain 7  score: -0.8 bits;  conditional E-value: 1.3
      TIP120   51 ytlletaldrldlselldrvlaGlsDe.hdikllcnlml 88  
                    l+++ +    +  ll ++ +Gl D+ + i+l +  ++
  KKY14712.1 1775 RLLVKN-FATKAIDLLLPELQRGLADDsYRIRLSSVELV 1812
                  455555.677788889999******9999**99887666 PP

  == domain 8  score: -3.1 bits;  conditional E-value: 6.7
      TIP120   84 cnlmlsklvalapeevlerldelvealrktl 114 
                      l+ l+++a  ++++rl +++++l   +
  KKY14712.1 2064 NAKALASLAEVAGPAMTRRLPSIINNLVDNI 2094
                  556788999999999****999999986544 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.38   3.4e+02      12      82 ..    1397    1466 ..    1389    1480 .. 0.63
   2 ?    2.2   0.0      0.19   1.7e+02      26      97 ..    1604    1678 ..    1588    1682 .. 0.84
   3 ?   -2.2   0.0       4.4   3.9e+03      41      92 ..    1738    1791 ..    1712    1793 .. 0.79
   4 ?    0.6   0.0      0.58   5.2e+02      66      95 ..    1868    1898 ..    1849    1905 .. 0.67
   5 !    7.1   0.0    0.0057       5.2       8      98 ..    1931    2021 ..    1898    2024 .. 0.82
   6 ?   -0.2   0.0         1   9.2e+02      34      93 ..    2066    2128 ..    2064    2136 .. 0.80
   7 !    6.5   0.0    0.0084       7.5      11      81 ..    2275    2348 ..    2268    2361 .. 0.85
   8 ?   -2.1   0.0       4.1   3.7e+03      27      48 ..    2369    2390 ..    2356    2395 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.38
         UME   12 rlseklndshgkkslaekkraikaleeliklagss.....issalpqimacLqsaleidelrsaalsvWatllsnl 82  
                  +l++     ++kks+++++ a+ a e  ++l+ ++     i ++lpq++a++ +a ++  +r+a+l++ +   s+l
  KKY14712.1 1397 SLKSAA---ENKKSVEQRQGALFAYEL-FSLILGRtfepyIIHILPQLLALFGDASAD--VREACLDTAKQCFSSL 1466
                  555544...556688888888888774.333333335555999*****9999999887..5555555444444444 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.19
         UME   26 laekkraikaleeliklagss.issalpqimacLqsalei..delrsaalsvWatllsnlededleplleqtfal 97  
                   a+k++a + ++ l +l  ++ +ss lp ++a L+ a  +  ++ r  a ++  +l+++l +++l  l++++++ 
  KKY14712.1 1604 SATKRKASQIIGSLAHLTDKKdLSSHLPILVAGLRAASVDpvPATRATASKALGSLVEKLGEDALPDLIPSLMSN 1678
                  4567777777888888888777*****************97779*********************9999988765 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 4.4
         UME   41 klagssissalpqimacLqsalei..delrsaalsvWatllsnlededleplle 92  
                    +g+s +++l +i+    s+l++  +++r+ al++ + l++n   +++  ll+
  KKY14712.1 1738 ACFGNSFATYLNKIIPPILSGLADdvEAIRETALRAGRLLVKNFATKAIDLLLP 1791
                  567888999999999999999999666999999999999999999988887776 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.58
         UME   66 elrsaalsvWatllsnl.ededleplleqtf 95  
                   +r+aa+ vW++l+ +    ++l p l+q++
  KKY14712.1 1868 LVRTAAVAVWKALVASPrTLKELVPTLSQLI 1898
                  5799*********986533455555555544 PP

  == domain 5  score: 7.1 bits;  conditional E-value: 0.0057
         UME    8 giltrlseklndshgkkslaekkraikaleeliklagss.issalpqimacLqsalei..delrsaalsvWatllsnlededleplleqtfali 98  
                  ++l +l+e l   ++++++++++ +  al+eli  a ++ ++     ++++ ++al +   ++r+aa +++++l ++l + ++ ++l+ +++l+
  KKY14712.1 1931 ALLPELEEGL---QSSTDVDTRQGICIALRELIVAAAPEsLEDHEKTLISVVRTALVDpdSDVREAAAEAFDSLQQILGKRAVDQVLPYLLSLL 2021
                  4555555555...445578889999999999988877665888888999********95559*********************99999887766 PP

  == domain 6  score: -0.2 bits;  conditional E-value: 1
         UME   34 kaleeliklagssissalpqimacLqsalei...delrsaalsvWatllsnlededleplleq 93  
                  kal  l ++ag++++  lp i+  L + + +   +el+s+   + ++ ls++++ d    + +
  KKY14712.1 2066 KALASLAEVAGPAMTRRLPSIINNLVDNIVSaktPELKSDLNAALNAVLSSVDEYDGLNTVMS 2128
                  799999*******************99998865679999999999999998887765555544 PP

  == domain 7  score: 6.5 bits;  conditional E-value: 0.0084
         UME   11 trlseklndshgkkslaekkraikaleeliklagssissalpqimacLqsalei...delrsaalsvWatllsn 81  
                  t+++  l  + +++s++ k  ++  l++l++ +   ++++lpq+  ++  +l++   d lrs a ++  tl++ 
  KKY14712.1 2275 TQITGPLIRVISERSVDVKCAILTTLNQLLEKIPLFVKPFLPQLQRTFTKCLADpssDLLRSRAAKALGTLITL 2348
                  55555555666788***************************************955558999999999998875 PP

  == domain 8  score: -2.1 bits;  conditional E-value: 4.1
         UME   27 aekkraikaleeliklagssis 48  
                    k  ++k+l+e+++ ags++s
  KKY14712.1 2369 GVKNAMLKGLQEVVSKAGSNMS 2390
                  468999***********99976 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       6.9   6.2e+03       2      11 ..    1150    1159 ..    1149    1176 .. 0.76
   2 ?    3.6   0.0      0.16   1.4e+02       4      25 ..    1253    1274 ..    1252    1276 .. 0.86
   3 ?    4.1   0.9      0.11        98       1      23 [.    1369    1391 ..    1369    1392 .. 0.93
   4 ?    0.2   0.0       1.9   1.7e+03       8      26 ..    1465    1483 ..    1464    1484 .. 0.87
   5 ?    2.9   0.0      0.26   2.4e+02       1      24 [.    1530    1578 ..    1530    1581 .. 0.78
   6 ?    0.3   0.0       1.9   1.7e+03       2      23 ..    1649    1673 ..    1648    1675 .. 0.87
   7 ?    0.9   0.0       1.1     1e+03       6      25 ..    1699    1718 ..    1695    1720 .. 0.85
   8 ?    4.1   0.2      0.11        99       1      26 [.    1990    2022 ..    1990    2023 .. 0.91
   9 ?    3.0   0.0      0.24   2.2e+02       1      12 [.    2334    2345 ..    2334    2359 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 6.9
                  HHHHHHHHHH CS
    HEAT_PBS    2 RraAakaLgq 11  
                  Rr AakaL +
  KKY14712.1 1150 RRTAAKALLA 1159
                  999****955 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.16
                  HHHHHHHHCTSGGGHHHHHHHC CS
    HEAT_PBS    4 aAakaLgqlgdeeaipaLleaL 25  
                  aA  +L +l+ +ea+++L++  
  KKY14712.1 1253 AAGTSLVTLRGKEALEPLMKMF 1274
                  677899************9865 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.11
                  HHHHHHHHHHHCTSGGGHHHHHH CS
    HEAT_PBS    1 vRraAakaLgqlgdeeaipaLle 23  
                  +Rr Aa++L+ l + + i aL+e
  KKY14712.1 1369 ARRGAAYGLAGLVAGRGITALKE 1391
                  59*******************97 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 1.9
                  HHHHCTSGGGHHHHHHHCT CS
    HEAT_PBS    8 aLgqlgdeeaipaLleaLq 26  
                  +L  +g ++++p+Lle L+
  KKY14712.1 1465 SLSSFGVKQILPQLLEGLD 1483
                  5788999*********997 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.26
                  HHHHHHHHHHHCTS.........................GGGHHHHHHH CS
    HEAT_PBS    1 vRraAakaLgqlgd.........................eeaipaLlea 24  
                  vR++A ++L ++gd                         eea++aL+++
  KKY14712.1 1530 VRASANRSLQRFGDvisnpeikslvdillsalsdptkhtEEALDALIKV 1578
                  6777788888888888888887777777777777888889999999987 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 1.9
                  HHHHHHHHHHCTS...GGGHHHHHH CS
    HEAT_PBS    2 RraAakaLgqlgd...eeaipaLle 23  
                  R+ A kaLg l     e+a+p L+ 
  KKY14712.1 1649 RATASKALGSLVEklgEDALPDLIP 1673
                  788999*****99999999999985 PP

  == domain 7  score: 0.9 bits;  conditional E-value: 1.1
                  HHHHHHCTSGGGHHHHHHHC CS
    HEAT_PBS    6 akaLgqlgdeeaipaLleaL 25  
                  + +Lg+ + ee +p++l++ 
  KKY14712.1 1699 LAGLGTTRLEETLPTILQNV 1718
                  679999999*******9985 PP

  == domain 8  score: 4.1 bits;  conditional E-value: 0.11
                  HHHHHHHHHHHCTS.......GGGHHHHHHHCT CS
    HEAT_PBS    1 vRraAakaLgqlgd.......eeaipaLleaLq 26  
                  vR aAa+a   l+        ++++p Ll +Lq
  KKY14712.1 1990 VREAAAEAFDSLQQilgkravDQVLPYLLSLLQ 2022
                  8****************9999999999999888 PP

  == domain 9  score: 3.0 bits;  conditional E-value: 0.24
                  HHHHHHHHHHHC CS
    HEAT_PBS    1 vRraAakaLgql 12  
                  +R +AakaLg+l
  KKY14712.1 2334 LRSRAAKALGTL 2345
                  599*******97 PP

>> DUF937  Bacterial protein of unknown function (DUF937)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0077       6.9      27      70 ..    1468    1525 ..    1460    1577 .. 0.75
   2 ?    1.9   0.9      0.34   3.1e+02      31      68 ..    1653    1695 ..    1622    1858 .. 0.71
   3 !    8.8   0.0    0.0026       2.3      27      61 ..    2007    2041 ..    1988    2146 .. 0.77
   4 ?   -1.4   0.0       3.7   3.4e+03      28      46 ..    2230    2255 ..    2228    2405 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0077
      DUF937   27 esalsaalpallgalaqna.aspgGlgdLlgallg...gglgg.............ggLgd 70  
                  + +++++lp ll++l + + +s++G+ dLlga+     +                 g+L+d
  KKY14712.1 1468 SFGVKQILPQLLEGLDESQwRSKKGACDLLGAMAYldpQ---QlavslpdiippltGVLND 1525
                  679*************999899**********9553332...1333555555555544444 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.34
      DUF937   31 saalpallgalaqnaaspgGlgdLlgallggglgg......ggL 68  
                  s+al++l++ l++ a  p+ + +L++ l+++  +g      + L
  KKY14712.1 1653 SKALGSLVEKLGEDA-LPDLIPSLMSNLRSETGAGdrlgsaQAL 1695
                  455555555555555.4444444444444433222112222111 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0026
      DUF937   27 esalsaalpallgalaqnaaspgGlgdLlgallgg 61  
                  ++a++++lp ll +l++ a++++ l+ Ll+ l+++
  KKY14712.1 2007 KRAVDQVLPYLLSLLQNEAEAENALAALLTLLTES 2041
                  789**************************988663 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 3.7
      DUF937   28 salsaalpallgalaqna.......a 46  
                  +++ a+lp +l++l++ +       a
  KKY14712.1 2230 KGINAILPIFLQGLMNGTvdqrtqaA 2255
                  57889999999999998855444430 PP

>> Tti2  Tti2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.69   6.2e+02     127     161 ..     310     344 ..     288     358 .. 0.88
   2 !    6.0   0.0    0.0083       7.4      92     158 ..    1485    1549 ..    1458    1563 .. 0.77
   3 ?    1.8   0.0      0.16   1.5e+02     101     158 ..    1610    1667 ..    1601    1683 .. 0.83
   4 ?    1.0   0.0      0.28   2.5e+02     117     156 ..    1744    1783 ..    1730    1795 .. 0.81
   5 ?    1.0   0.0      0.28   2.5e+02     101     155 ..    2254    2308 ..    2249    2321 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.69
        Tti2 127 piLnllDdtdtsvKlrGlklLqtlleklesskllk 161
                 p+L+ l +t++ +K  +++  ++ll+++ + ++l 
  KKY14712.1 310 PLLSSLTSTNPIIKNGACQSFESLLSRCHEGPILD 344
                 7899999999******************9987654 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0083
        Tti2   92 kpWksgdlkaisvlawiirqlqskeieanwplivPpiLnllDdtdtsvKlrGlklLqtlleklessk 158 
                  ++W+s++  a+++l  +++ l+++++  ++p i+Pp+  +l+dt+ +v++++ + Lq++ + +++ +
  KKY14712.1 1485 SQWRSKK-GACDLLG-AMAYLDPQQLAVSLPDIIPPLTGVLNDTHKEVRASANRSLQRFGDVISNPE 1549
                  5566333.3445554.446788888999*******************************99988875 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.16
        Tti2  101 aisvlawiirqlqskeieanwplivPpiLnllDdtdtsvKlrGlklLqtlleklessk 158 
                  a +++  + + +++k++++++p++v ++ +   d+ ++ ++++ k L +l+ekl ++ 
  KKY14712.1 1610 ASQIIGSLAHLTDKKDLSSHLPILVAGLRAASVDPVPATRATASKALGSLVEKLGEDA 1667
                  55555555566667799*************************************9984 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.28
        Tti2  117 ieanwplivPpiLnllDdtdtsvKlrGlklLqtllekles 156 
                  + ++++ i+PpiL+ l d+ +++++++l+  + l++++ +
  KKY14712.1 1744 FATYLNKIIPPILSGLADDVEAIRETALRAGRLLVKNFAT 1783
                  5689999*******99999999**9999887777766655 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.28
        Tti2  101 aisvlawiirqlqskeieanwplivPpiLnllDdtdtsvKlrGlklLqtllekle 155 
                  a+  ++ ii+++++++++     i+ p++ ++ ++++ vK   l  L++llek++
  KKY14712.1 2254 AAMAISEIIDRTSPESLKPFVTQITGPLIRVISERSVDVKCAILTTLNQLLEKIP 2308
                  5566777888899998999999******************************997 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1         2   1.8e+03      77     133 ..    1307    1361 ..    1266    1369 .. 0.60
   2 ?    1.1   0.0      0.36   3.2e+02      41      41 ..    1620    1620 ..    1469    1779 .. 0.56
   3 ?    0.1   0.0      0.73   6.6e+02      98     156 ..    1966    2037 ..    1935    2041 .. 0.62
   4 !    8.0   0.1    0.0028       2.6      60     158 ..    2250    2347 ..    2232    2350 .. 0.78
   5 ?    0.7   0.0      0.49   4.4e+02       9      46 ..    2316    2353 ..    2311    2396 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2
     DUF3385   77 psneeyyptvvinaLlrilkdpslsshhaavveaimnifktlglkcvpfLdqiipal 133 
                   s +e     vi+ Ll+ l+ ps s  + av   ++  ++  +++  +f+++ i +l
  KKY14712.1 1307 DSGDERVV-AVIERLLATLSTPSES-VQYAVAGCLTPLVHLARSETATFIQKMIVQL 1361
                  34444443.4889999999999855.5566666777667666677777777777665 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.36
     DUF3385   41 L 41  
                  L
  KKY14712.1 1620 L 1620
                  1 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.73
     DUF3385   98 pslsshhaavveai...............mnifktlglkc.vpfLdqiipallsvirtteesnlrefllqqLatL 156 
                  +sl++h ++ ++++                  f +l+       +dq++p lls++++ +e    e  l +L tL
  KKY14712.1 1966 ESLEDHEKTLISVVrtalvdpdsdvreaaAEAFDSLQQILgKRAVDQVLPYLLSLLQNEAE---AENALAALLTL 2037
                  5555555555555544444444444443366666666655566999********9998655...44444444444 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0028
     DUF3385   60 eeaaretdlsllmvglspsneeyyptvvinaLlrilkdpslsshhaavveaimnifktlglkcvpfLdqiipallsvirtteesnlrefllqqLatL 156 
                  + +++++ +s+++ ++sp +   + t +   L+r+++++s++  + a+++++ + ++++ l + pfL+q+  ++ +++ + ++  lr    ++L+tL
  KKY14712.1 2250 QRTQAAMAISEIIDRTSPESLKPFVTQITGPLIRVISERSVD-VKCAILTTLNQLLEKIPLFVKPFLPQLQRTFTKCLADPSSDLLRSRAAKALGTL 2345
                  334455778888888888887777777888889999998877.677888889999999999999999999999999999988888888888889888 PP

     DUF3385  157 vs 158 
                  ++
  KKY14712.1 2346 IT 2347
                  87 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.49
     DUF3385    9 pqLLelLlnilkteqsqsirrevikllGilGALDPykh 46  
                  pqL ++ +++l   +s  +r  ++k lG+l  L P   
  KKY14712.1 2316 PQLQRTFTKCLADPSSDLLRSRAAKALGTLITLTPRVD 2353
                  78888888888888899999999999999887777555 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0       0.2   1.8e+02     370     414 ..      44      88 ..      38      94 .. 0.83
   2 ?    3.2   0.1     0.043        38     171     243 ..     275     355 ..     219     372 .. 0.62
   3 ?   -2.5   0.1       2.3   2.1e+03      59      78 ..     469     488 ..     427     517 .. 0.63
   4 ?    3.0   0.0     0.051        45      18     105 ..    1272    1370 ..    1258    1399 .. 0.68
   5 ?   -0.4   0.1      0.53   4.7e+02     332     421 ..    1473    1558 ..    1471    1578 .. 0.67
   6 ?   -2.5   0.0       2.4   2.1e+03     188     243 ..    1624    1680 ..    1598    1692 .. 0.67
   7 ?   -2.6   0.0       2.4   2.2e+03     334     395 ..    1711    1771 ..    1707    1783 .. 0.65
   8 ?    0.0   0.1       0.4   3.5e+02     332     418 ..    1893    1977 ..    1885    1982 .. 0.75
   9 ?    0.3   0.1      0.33     3e+02     333     397 ..    1932    1997 ..    1928    2007 .. 0.87
  10 ?    2.1   2.4      0.09        81     328     380 ..    2008    2056 ..    2004    2096 .. 0.83
  11 ?   14.2   0.0   1.9e-05     0.017     331     416 ..    2233    2318 ..    2230    2325 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.2
     MMS19_C 370 peLptLlPlLlqaL.dlpdaevkastLetlksileespslvsehls 414
                  e + LlPlLl+ +   +d++ ++++ ++++ +l++ p+  ++ ++
  KKY14712.1  44 KEVQALLPLLLETIpRYSDRNSRRAVQNCIRTLLRK-PEFAAPIVK 88 
                 68999*********99*****************995.665555555 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.043
     MMS19_C 171 i........ilftailaalrkevklpdlsellnelle...llaseaespflrlaylrllallvNKflkdedlselldellesie 243
                 +        +++ ++l +++k+ ++   se +++ l    l++ ++++p+ + ++++ + +l+ ++ ++  l+++ +++  s++
  KKY14712.1 275 LrspevvlgAVLPSLLKSIPKSFDV---SEAVSKNLAkplLSSLTSTNPIIKNGACQSFESLLSRCHEGPILDKVAEQVIASLK 355
                 1444422334444555555555444...33333333224445666677777777777777777777777777777555555554 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.3
     MMS19_C  59 ayahailstllkllekkqtd 78 
                 +   ++l+tl+++++++++ 
  KKY14712.1 469 EIFKSVLQTLQSVFSEVVST 488
                 22225555555555554422 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.051
     MMS19_C   18 a.yervLeaLaelssekqlfetlvirllnkldlvlksnessaayahailstllkllekkq..............tdlekeellnsyydrivprlltl 99  
                  + +e++Le+  + s+e +l+++ v+ l   +   l+s ++    ++a+++ ll++l++                + l   ++++ ++++++++l+t+
  KKY14712.1 1272 KmFEQTLESANKASKEADLVNEAVVVLYGSIARHLDSGDE---RVVAVIERLLATLSTPSesvqyavagcltplVHL-ARSETATFIQKMIVQLTTN 1364
                  1589999999999999999999999999999888888876...3444444444444443333335555555554344.4455677888888888777 PP

     MMS19_C  100 vvsaas 105 
                   ++aa 
  KKY14712.1 1365 KSYAAR 1370
                  666665 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.53
     MMS19_C  332 tvlpklvegfkssdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevkastLetlksileespslvse.hlssLvprLL 421 
                  ++lp+l+eg  +s+  +k+   + L +  + + ++ l   Lp+++P L   L+ + +ev+as+   l+   +    ++s   ++sLv  LL
  KKY14712.1 1473 QILPQLLEGLDESQWRSKKGA-CDLLGAMAYLDPQQLAVSLPDIIPPLTGVLNDTHKEVRASANRSLQRFGD----VISNpEIKSLVDILL 1558
                  567777777777444444443.34445556667777777899999999999999999999877444444433....333336666666666 PP

  == domain 6  score: -2.5 bits;  conditional E-value: 2.4
     MMS19_C  188 pdlsellnelle..llaseaespflrlaylrllallvNKflkdedlselldellesie 243 
                  +dls+ l  l+   ++as +  p +r +++++l +lv K   ++ l++l+ +l++++ 
  KKY14712.1 1624 KDLSSHLPILVAglRAASVDPVPATRATASKALGSLVEKLG-EDALPDLIPSLMSNLR 1680
                  45555555555555567777777888888888888888866.4566666666666555 PP

  == domain 7  score: -2.6 bits;  conditional E-value: 2.4
     MMS19_C  334 lpklvegfkssdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevkastL 395 
                  lp ++++++s++++ +e + + L   l     +   ++L++++P +l +L+ + ++++  +L
  KKY14712.1 1711 LPTILQNVSSTKPTVREGFMT-LFIFLPACFGNSFATYLNKIIPPILSGLADDVEAIRETAL 1771
                  566666665555555554433.3344444445556788999999999999887777777776 PP

  == domain 8  score: 0.0 bits;  conditional E-value: 0.4
     MMS19_C  332 tvlpklvegfkssdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaL.dlpdaevkastLetlksile.espslvsehlssLvp 418 
                  t+ ++++++  ss++e+k +   AL  ++++  + +ll     LlP L ++L + +d + ++     l++++   +p+ +++h ++L++
  KKY14712.1 1893 TLSQLIISRLASSNMEQKVIASNALGEMIRKAGEGVLLA----LLPELEEGLqSSTDVDTRQGICIALRELIVaAAPESLEDHEKTLIS 1977
                  456677777777999999999999999999999999886....6666777775556666777777777666664678999999888886 PP

  == domain 9  score: 0.3 bits;  conditional E-value: 0.33
     MMS19_C  333 vlpklvegfks.sdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevkastLet 397 
                  +lp+l eg +s +d +t++   +AL  l+    ++ l  + +tL++++ +aL  pd++v+ ++ e 
  KKY14712.1 1932 LLPELEEGLQSsTDVDTRQGICIALRELIVAAAPESLEDHEKTLISVVRTALVDPDSDVREAAAEA 1997
                  78999999999999999999999****9999999999*********************99876554 PP

  == domain 10  score: 2.1 bits;  conditional E-value: 0.09
     MMS19_C  328 rfFstvlpklvegfkssdsetkenyLvALshllkhvPkslllpeLptLlPlLl 380 
                  r  ++vlp+l++  ++  + + en L AL  ll+   ++ ++  Lp+L+P+Ll
  KKY14712.1 2008 RAVDQVLPYLLSLLQN--EAEAENALAALLTLLTESTRANII--LPNLIPTLL 2056
                  77899********988..99999****988888777766665..677777776 PP

  == domain 11  score: 14.2 bits;  conditional E-value: 1.9e-05
     MMS19_C  331 stvlpklvegfkssdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevkastLetlksileespslvsehlssL 416 
                  + +lp  ++g  + + ++++   +A+s ++  ++++ l p+ +++   L++ ++  + +vk + L+tl+ +le+ p  v+++l +L
  KKY14712.1 2233 NAILPIFLQGLMNGTVDQRTQAAMAISEIIDRTSPESLKPFVTQITGPLIRVISERSVDVKCAILTTLNQLLEKIPLFVKPFLPQL 2318
                  668888888888866677777779**************************************************999999988877 PP

>> Mo25  Mo25-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.4   3.9e+03     121     182 ..      54     113 ..      31     123 .. 0.64
   2 ?    3.7   0.0     0.038        34     175     232 ..    1760    1818 ..    1660    1826 .. 0.84
   3 ?    3.9   0.0     0.033        30     109     205 ..    2157    2324 ..    2078    2336 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.4
        Mo25 121 qlllegyeskeialhagsilrecikyealariiLyseefwkffeyvensnfeiasdafetlk 182
                    +  y+++++   + + +r+ ++ +++a+ i   +++ + ++  +++n    ++af +l+
  KKY14712.1  54 LETIPRYSDRNSRRAVQNCIRTLLRKPEFAAPIV--KSLGNVLKAESSKNVIATTNAFVILE 113
                 3344445555666666777777777777777777..45667777777777777777777765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.038
        Mo25  175 sdafetlke.lLtkhkklvaefleenfdeffkyinkllqsenYVtkrqslkLLgelLld 232 
                  +d +e ++e +L   + lv++f ++ +d +  ++++ l+ ++Y ++  s++L+g+lL +
  KKY14712.1 1760 ADDVEAIREtALRAGRLLVKNFATKAIDLLLPELQRGLADDSYRIRLSSVELVGDLLFN 1818
                  55555554415777788999************************************986 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.033
        Mo25  109 aveyletkpeilqlllegyes.....keialhagsilrecikyealariiLyse........................................... 157 
                  +v+y + +++++ +ll  +++      + a +a + l   ++ e++  ++++ +                                           
  KKY14712.1 2157 TVDYSRYNQDLIRVLLLSFNDgdnevIKAAWTALNQLTSRLRKEEMESLVISTRqvlqqvgvpghnlpgfglpkginailpiflqglmngtvdqrtq 2253
                  5555555555555555555532322223334444444444555555555553334555555555555555555555555555555555555555555 PP

        Mo25  158 .......................efwkffeyvensnfeiasdafetlkelLtkhkklvaefleenfdeffk 205 
                                             +++++++++ ++ +  ++tl++lL k   +v+ fl +   +f+k
  KKY14712.1 2254 aamaiseiidrtspeslkpfvtqITGPLIRVISERSVDVKCAILTTLNQLLEKIPLFVKPFLPQLQRTFTK 2324
                  555555555666666666555534567999********************************988888876 PP

>> RasGEF_N_2  Rapamycin-insensitive companion of mTOR RasGEF_N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.2   1.1e+03       7      34 ..    1516    1543 ..    1515    1574 .. 0.83
   2 ?   -1.0   0.1       2.6   2.3e+03       7      32 ..    1976    2001 ..    1972    2023 .. 0.85
   3 ?    6.4   0.0     0.013        12       7      59 ..    2168    2223 ..    2163    2224 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.2
  RasGEF_N_2    7 iellvnqLydqsrevvaaaleiLeeacd 34  
                  i+ l+  L+d  +ev+a a + L+++ d
  KKY14712.1 1516 IPPLTGVLNDTHKEVRASANRSLQRFGD 1543
                  7889999***************999844 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.6
  RasGEF_N_2    7 iellvnqLydqsrevvaaaleiLeea 32  
                  i++  + L d++++v++aa+e++++ 
  KKY14712.1 1976 ISVVRTALVDPDSDVREAAAEAFDSL 2001
                  56667889************999876 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.013
  RasGEF_N_2    7 iellvnqLydqsrevvaaaleiLeeacddk...eslevlvelkpslqhlgeigslL 59  
                  i++l+ + +d ++ev++aa  +L++ ++     e+   ++++++ lq++g  g+ L
  KKY14712.1 2168 IRVLLLSFNDGDNEVIKAAWTALNQLTSRLrkeEMESLVISTRQVLQQVGVPGHNL 2223
                  88999999****************99654223255555678999999999888776 PP

>> FANCI_S2  FANCI solenoid 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       1.6   1.5e+03       6      92 ..      11      96 ..      10     102 .. 0.82
   2 ?   -1.3   0.0       2.7   2.5e+03      25      72 ..    1315    1362 ..    1251    1371 .. 0.60
   3 ?   10.1   0.1   0.00081      0.73      59     163 ..    1890    1998 ..    1839    1998 .. 0.86
   4 ?   -0.8   0.0       1.9   1.7e+03      59     112 ..    2273    2326 ..    2246    2350 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.6
    FANCI_S2  6 vqlgfaLldsagpkkvvgvksaeasaaksktvaqaaaklgsqiLlelfkvhesarseiieqllsriitkseeevsqyiklLselvks 92
                v+l +aLl+s ++ +++ ++ + ++  +++ ++++++ l   +L ++ +  +  ++  +++++  ++ k e  +++++k L++  k+
  KKY14712.1 11 VKLQLALLSSSTSLRINTLEEVRQRLDQRDASTKEVQALLPLLLETIPRYSDRNSRRAVQNCIRTLLRKPEF-AAPIVKSLGNVLKA 96
                677788999999988899999999988888888999888888888888888888999999999998888777.68888888887665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.7
    FANCI_S2   25 ksaeasaaksktvaqaaaklgsqiLlelfkvhesarseiieqllsrii 72  
                  +++e+  a+ +t++++++  ++  L  l++  +s + + i++++ +++
  KKY14712.1 1315 AVIERLLATLSTPSESVQYAVAGCLTPLVHLARSETATFIQKMIVQLT 1362
                  333333444444444444444455555555555555555555555554 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00081
    FANCI_S2   59 arseiieqllsriitkseeevsqyiklLselvksapl.tllesssklkelldylsflpletatallkAllPLlkvs..eslrda...lilvLRKalf 149 
                     ++ + ++sr+++++ e+    ++ L+e++++a   +ll    +l+e l+     + +t +++  Al  L+ +   esl d+   li v+R al+
  KKY14712.1 1890 LVPTLSQLIISRLASSNMEQKVIASNALGEMIRKAGEgVLLALLPELEEGLQSS--TDVDTRQGICIALRELIVAAapESLEDHektLISVVRTALV 1984
                  556778889******9999999999*******9987615566777788888876..7889999999******998877899998888********** PP

    FANCI_S2  150 sreldaRkiAvaGf 163 
                    + d+R++A  +f
  KKY14712.1 1985 DPDSDVREAAAEAF 1998
                  **********9988 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.9
    FANCI_S2   59 arseiieqllsriitkseeevsqyiklLselvksapltllesssklkelldyls 112 
                  +  +i   l+  i  +s +    +++ L +l ++ pl ++ +  +l++++  + 
  KKY14712.1 2273 FVTQITGPLIRVISERSVDVKCAILTTLNQLLEKIPLFVKPFLPQLQRTFTKCL 2326
                  555666666666666666666668899*********************998775 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.2     0.005       4.5      13      37 ..    1316    1340 ..    1313    1344 .. 0.93
   2 ?    2.1   0.0      0.24   2.2e+02      13      35 ..    1436    1458 ..    1432    1458 .. 0.90
   3 ?   -1.0   0.0       2.3   2.1e+03      14      36 ..    1550    1575 ..    1544    1575 .. 0.80
   4 ?   -2.0   0.0       4.8   4.3e+03      21      35 ..    1983    1997 ..    1976    1998 .. 0.82
   5 ?   -1.3   0.2       2.9   2.6e+03      13      26 ..    2013    2026 ..    2009    2037 .. 0.77
   6 ?   -0.9   0.0       2.2     2e+03      12      28 ..    2029    2046 ..    2027    2048 .. 0.82
   7 ?    0.7   0.0      0.66   5.9e+02      16      36 ..    2280    2300 ..    2276    2304 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.005
                  HHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm   13 avppLvrLLssedeevqeeAawALs 37  
                  ++++L++ Ls+++e+vq ++a++L+
  KKY14712.1 1316 VIERLLATLSTPSESVQYAVAGCLT 1340
                  799********************96 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.24
                  HHHHHHHHTTTSSHHHHHHHHHH CS
         Arm   13 avppLvrLLssedeevqeeAawA 35  
                  ++p+L++L  + + +v+e+++ +
  KKY14712.1 1436 ILPQLLALFGDASADVREACLDT 1458
                  79*****************9865 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 2.3
                  HHHHHHHTT...TSSHHHHHHHHHHH CS
         Arm   14 vppLvrLLs...sedeevqeeAawAL 36  
                  ++ Lv+ L    s+ ++ +eeA+ AL
  KKY14712.1 1550 IKSLVDILLsalSDPTKHTEEALDAL 1575
                  5567777777999**********998 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 4.8
                  TTTSSHHHHHHHHHH CS
         Arm   21 LssedeevqeeAawA 35  
                  L ++d +v+e+Aa A
  KKY14712.1 1983 LVDPDSDVREAAAEA 1997
                  4489********977 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 2.9
                  HHHHHHHHTTTSSH CS
         Arm   13 avppLvrLLssede 26  
                  ++p L++LL++e e
  KKY14712.1 2013 VLPYLLSLLQNEAE 2026
                  8999*****97654 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 2.2
                  THHHHHHHHTT.TSSHHH CS
         Arm   12 GavppLvrLLs.sedeev 28  
                  +a+ +L++LL+ s+  ++
  KKY14712.1 2029 NALAALLTLLTeSTRANI 2046
                  8999******98887765 PP

  == domain 7  score: 0.7 bits;  conditional E-value: 0.66
                  HHHHHTTTSSHHHHHHHHHHH CS
         Arm   16 pLvrLLssedeevqeeAawAL 36  
                  pL+r +s  +++v+++++++L
  KKY14712.1 2280 PLIRVISERSVDVKCAILTTL 2300
                  9*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2671 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.58u 0.38s 00:00:01.96 Elapsed: 00:00:00.61
# Mc/sec: 13280.87
//
Query:       KKY14713.1  [L=527]
Description: putative apses transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-05   22.6   0.0     0.0018   18.1   0.0    2.3  1  KilA-N    KilA-N domain


Domain annotation for each model (and alignments):
>> KilA-N  KilA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     1e-07    0.0018       8     101 ..      39     112 ..      31     117 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1e-07
      KilA-N   8 iiirrvkdgyinatkllkaa.aedtkriddWlrnkstkelleeleedynisekkksektisenrkakpgrlqGtYvhpdlalava.sW.isp.efalk 101
                  + rr+++ +in tkll+ a +++ +r d +l++++t++++++  ++                       l+G++++ + al++a +  i++  ++l+
  KKY14713.1  39 CVARREDNHFINGTKLLNVAgMTRGRR-DGILKSEKTRNVVKIGPMH-----------------------LKGVWIPFERALEFAnREkITDlLYPLF 112
                 3458888*************7666666.**************99876.......................5677777777777775555666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 3411.44
//
Query:       KKY14714.1  [L=1387]
Description: putative atp dependent rna helicase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-13   51.2   0.4    6.2e-13   49.1   0.3    2.2  2  Helicase_C   Helicase conserved C-terminal domain
    2.7e-11   43.7   0.0    2.7e-11   43.7   0.0    2.4  3  HA2          Helicase associated domain (HA2)
    3.7e-11   43.1   0.1    8.5e-11   41.9   0.1    1.6  1  DEAD         DEAD/DEAH box helicase
    1.8e-06   28.2   0.1    6.9e-06   26.4   0.1    2.0  1  AAA_22       AAA domain
     0.0051   16.5   0.0      0.012   15.3   0.0    1.6  1  AAA_30       AAA domain
     0.0065   15.6   0.0      0.015   14.4   0.0    1.6  1  T2SSE        Type II/IV secretion system protein
  ------ inclusion threshold ------
      0.019   15.5   0.0      0.083   13.4   0.0    2.2  2  AAA_18       AAA domain
      0.048   13.8   0.2         16    5.6   0.0    2.7  2  AAA_33       AAA domain
       0.12   12.2   0.0        0.3   11.0   0.0    1.6  1  RsgA_GTPase  RsgA GTPase
       0.13   12.8   0.0       0.56   10.7   0.0    2.1  1  ABC_tran     ABC transporter


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0        10   1.8e+04      79      90 ..     177     188 ..     175     191 .. 0.88
   2 !   49.1   0.3   3.5e-16   6.2e-13      12     110 ..     915    1036 ..     902    1037 .. 0.84

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 10
                 SSTSTTESEEEE CS
  Helicase_C  79 GidipkvnlVin 90 
                 G+++p+++ Vi 
  KKY14714.1 177 GLNLPNIEAVIK 188
                 9********995 PP

  == domain 2  score: 49.1 bits;  conditional E-value: 3.5e-16
                  HTTTTSEEEEEESSHHHHHH.....HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH...... CS
  Helicase_C   12 leeeggkilifvntidrlek.....vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv...... 97  
                  l +  + ilif++ i ++ +     +++   ++g  + +lh++ ++++++++++   +g ++++iat++ae+Gi+ip+++ Vi+ +  + +      
  KKY14714.1  915 LVQYSKAILIFMPGIGEMRRlhqviTSYPAFQHGWIFHILHSTVSTEDQQAAFRLPPQGMRKIVIATNIAETGITIPDITAVIDTGKEKIMrfderr 1011
                  5678899*********66544335444445567**************************************************99999555555566 PP

                  ............HHHHHHHTTSSST CS
  Helicase_C   98 ............tsyiqriGRtgRa 110 
                              +s  qr GR++R+
  KKY14714.1 1012 qvsrltesfiskASSRQRQGRAARV 1036
                  778999999999************7 PP

>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1       9.7   1.7e+04      56      80 ..      19      43 ..      18      64 .. 0.55
   2 ?   -2.1   0.1       2.7   4.8e+03      77      92 ..     356     383 ..     327     394 .. 0.50
   3 !   43.7   0.0   1.5e-14   2.7e-11       1      78 [.    1101    1181 ..    1101    1219 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 9.7
         HA2 56 Aalsveeifleeneeekeeeeeeee 80
                A +sv +  ++e+++e+ +e+++++
  KKY14714.1 19 ATVSVPSTKVKEEQPESHDENNTKH 43
                5566666667777777666665211 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.7
         HA2  77 e........e....eekakkkrkeeeka 92 
                 +        e    ++ka+k+r++++ +
  KKY14714.1 356 QwiirkrvlEienaKAKAEKRRERARSE 383
                 2344333331322233333333333333 PP

  == domain 3  score: 43.7 bits;  conditional E-value: 1.5e-14
         HA2    1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeee.....e 78  
                  A+e L++ + L++ ++lT++Gr++a+lPl+  l+k+ l +++l  +cld + t++A+ls +++f+++ ++    e +     +
  KKY14714.1 1101 AIEALKEEKVLTTFEDLTAIGRQLARLPLDIPLGKLVLNGLNL--QCLDVMSTVAALLSSKSPFISSVKSTTGMEGSrksfaR 1181
                  6677888888888899************************777..********************999765444433444440 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.1   4.8e-14   8.5e-11       8     170 ..     654     808 ..     647     813 .. 0.81

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 4.8e-14
                 HHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT..STSEEEEEETTSSHHHHHHHHHTTCSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   8 iplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky..idlrvlliiggvaardqlskldngvdivvgt 104
                 ++ + + + +++++eTGsGK++     +l++ ++  + +  k+l+  P r  a   + ++++ + +   dl +   + g a r + ++  ++++++++t
  KKY14714.1 654 LQVFNSHQLMILCGETGSGKSTQTPALILEHELS--SGKDCKILCTQPRRISAMSLAARVSEELGEnkGDLGTTRSLVGYAIRLESKVS-ASTRLTYAT 749
                 45555667899**********9988888876665..77788*********988888888866665423447777667789998888888.99******* PP

                 HHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 105 pgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                 +g  ++ll+++  +l +v++lV+DE+++   +  sdf+  +l++l +   d k    v+++SAT+ 
  KKY14714.1 750 TGVAMRLLERQD-DLADVNVLVVDEVHERNID--SDFLLIVLKRLLSRRPDLK----VVLMSATID 808
                 ********8777.8**************9987..999999999*965555555....*******97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.1   3.8e-09   6.9e-06       5     129 ..     660     804 ..     657     812 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 3.8e-09
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka........................erlsseell 79 
                 +++++++Ge+G+GK+t    l  +++        ++  +++t p   s  +l+ ++ ++lg+++ +                          +++   +
  KKY14714.1 660 HQLMILCGETGSGKSTQTPALILEHELS----SGKDCKILCTQPRRISAMSLAARVSEELGENKGDlgttrslvgyairleskvsastrlTYATTGVAM 754
                 6899********************9533....235555555555555**************99888999999999999998888754333333333333 PP

      AAA_22  80 ealeqalrarav...ielliiDEaqhlr..seealeeLrsllnlsrkgvqliLvG 129
                 ++le++     +   + +l++DE++  +  s+ +l  L++ll  +r +++++L+ 
  KKY14714.1 755 RLLERQD----DladVNVLVVDEVHERNidSDFLLIVLKRLLS-RRPDLKVVLMS 804
                 3333333....36667*********976667888888866666.58999999875 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.8e-06     0.012       6      97 ..     649     774 ..     647     803 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.8e-06
      AAA_30   6 QaaavealltsgdrvavltGpAGtGKttalkalreaweaa.g..........grviglAptgkaAkvLaeelgi..eastiakllkrlk.......... 81 
                 Q++ + ++ +s++ +++l G  G+GK+t   al   +e + g          +r+ +++  ++++++L+e+ g   +++++  +  rl+          
  KKY14714.1 649 QKSELLQVFNSHQ-LMILCGETGSGKSTQTPALILEHELSsGkdckilctqpRRISAMSLAARVSEELGENKGDlgTTRSLVGYAIRLEskvsastrlt 746
                 7777778888886.***************999976666664799*************************855521222222222222224555555555 PP

      AAA_30  82 ............grarlepgtllivDEa 97 
                             ++ +l++ ++l+vDE+
  KKY14714.1 747 yattgvamrlleRQDDLADVNVLVVDEV 774
                 66668899999866789999*******7 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   8.3e-06     0.015     115     152 ..     569     683 ..     460     702 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.3e-06
       T2SSE 115 k..............................................................................ekiaevlrkavrerglilvs 135
                 k                                                                              ++ +e+l+   ++++l+++ 
  KKY14714.1 569 KrleelrslvreslpslerkesstsilpfskqtesnaevltlktplqprssiiqniwtnklsspayekmlrsreqlpvyKQKSELLQ-VFNSHQLMILC 666
                 444444444444445555555555555555555555555555555555555555555555555555555556666677444455555.5599******* PP

       T2SSE 136 GgTgsGKttllyallke 152
                 G TgsGK+t + al+ e
  KKY14714.1 667 GETGSGKSTQTPALILE 683
                 *********99888754 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0        10   1.8e+04      40      69 ..     547     576 ..     542     589 .. 0.69
   2 ?   13.4   0.0   4.6e-05     0.083       2      95 ..     664     787 ..     663     805 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 10
      AAA_18  40 evdpealdeskrldedkldklldaleenss 69 
                  + ++++d s+r+d+ + ++  + lee +s
  KKY14714.1 547 VWRHFWTDLSERMDQYVFEQDAKRLEELRS 576
                 556668888888888877766666666554 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4.6e-05
      AAA_18   2 lltGtpGvGKttlakeL......skrlgf...........................gvnlrdvakenglllevdpe..aldeskrldedkldklldale 65 
                 +l+G  G+GK+t + +L      s    +                           g+n +d+ + + l+ +      +++ s rl    + +++++le
  KKY14714.1 664 ILCGETGSGKSTQTPALilehelS----SgkdckilctqprrisamslaarvseelGENKGDLGTTRSLVGYAIRLesKVSASTRLTYATTGVAMRLLE 758
                 799*************98654441....2555566888888888889999999999**********99999999999********************** PP

      AAA_18  66 enssaleegknlvidghlaeleseaakdik 95 
                 ++++ l++ ++lv+d +++ +++ ++  i+
  KKY14714.1 759 RQDD-LADVNVLVVDEVHERNIDSDFLLIV 787
                 *997.**************99999887644 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0092        16       1      18 [.     662     679 ..     662     722 .. 0.88
   2 ?    5.3   0.1     0.011        20      53     112 ..    1015    1073 ..     989    1078 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0092
      AAA_33   1 lvllvGlpGsGKstlaer 18 
                 l++l+G  GsGKst    
  KKY14714.1 662 LMILCGETGSGKSTQTPA 679
                 789***********7655 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.011
      AAA_33   53 drlyqilnelarkalsagrnvildatnlsr.rerarflklarrlgvpvrivvvetdeetlk 112 
                    +  ++   a +++++gr++ +  +++ r  +r+rf++l  +++ p +i+ ++ +e  l+
  KKY14714.1 1015 RLTESFI-SKASSRQRQGRAARVQEGLCVRlYTRDRFDRLMTEHSTP-EILRLSLSETILR 1073
                  3344444.77889*************99999**************77.8888888887665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00017       0.3      88     125 ..     648     686 ..     592     695 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00017
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallpelel 125
                  ++ +el +++++ ++++l+G++G GKSt   al+ e+el
   KKY14714.1 648 KQKSELLQVFNShQLMILCGETGSGKSTQTPALILEHEL 686
                  56677777877779**************88888766655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00031      0.56       9      41 ..     658     690 ..     653     722 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00031
                 ETTSEEEEEESTTSSHHHHHHHHTTSS--SEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   9 kegekvaivGenGaGKStLlkllagllkpteGe 41 
                 +  +++ + Ge+G+GKSt   +l+ +++  +G+
  KKY14714.1 658 NSHQLMILCGETGSGKSTQTPALILEHELSSGK 690
                 66788999**********999999888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.52
# Mc/sec: 8096.78
//
Query:       KKY14715.1  [L=293]
Description: putative brct domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-10   39.9   0.0      7e-10   39.2   0.0    1.4  1  BRCT_2     BRCT domain, a BRCA1 C-terminus domain
    0.00095   19.4   0.0     0.0017   18.6   0.0    1.4  1  LIG3_BRCT  DNA ligase 3 BRCT domain
     0.0096   15.9   1.3      0.033   14.1   0.2    2.2  2  PTCB-BRCT  twin BRCT domain


Domain annotation for each model (and alignments):
>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   1.2e-13     7e-10       2      84 ..     150     251 ..     149     252 .. 0.91

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 1.2e-13
      BRCT_2   2 sklFeglrFYin.daepspsreklkklIeknGGevvetitsa.vyiviaesneee.................laekrkrrvvspkyIkdCikkgkllpl 81 
                 + +F+gl+FY+n ++ p   ++klk+l  ++GG+v     ++ v++vi  ++++                      ++ ++v++++  ++ik+g+ lp 
  KKY14715.1 150 RLIFSGLTFYLNgSTAPLVGDHKLKHLLAQYGGHVAIALGRRtVTHVILGETKHHsgtakglaaskiqkemtRVGGKGVKYVTANWALESIKAGRRLPE 248
                 679*********8777889****************999977669999998888889*************99888999*********************9 PP

      BRCT_2  82 eny 84 
                  +y
  KKY14715.1 249 ARY 251
                 998 PP

>> LIG3_BRCT  DNA ligase 3 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.9e-07    0.0017       5      80 ..     152     244 ..     151     245 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.9e-07
   LIG3_BRCT   5 iFtgvklfipksv.edy..kklrRYfiAydGdlvkeekekeaTHvvvskke............eskkeke..ksknakaVtaewiwesIkkrt 80 
                 iF+g + +++ s  + +  +kl+  +  y+G++       ++THv+  + +            +++ke+     k++k Vta+w  esIk+++
  KKY14715.1 152 IFSGLTFYLNGSTaPLVgdHKLKHLLAQYGGHVAIALGRRTVTHVILGETKhhsgtakglaasKIQKEMTrvGGKGVKYVTANWALESIKAGR 244
                 6777778887776322211466455555*******9**********9877789********996666665125789**************876 PP

>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.2   5.5e-06     0.033      13      43 ..     170     201 ..     156     209 .. 0.83
   2 ?    0.1   0.1      0.14   8.1e+02      13      32 ..     213     232 ..     202     235 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.5e-06
                 HHHHHHHHHHTT-EEESSE.ETT-SEEEECSS CS
   PTCB-BRCT  13 rkslqklieamGaeyskdl.tksvTHLicksg 43 
                  ++l++l+ + G+++   l +++vTH+i  ++
  KKY14715.1 170 DHKLKHLLAQYGGHVAIALgRRTVTHVILGET 201
                 579*************************8654 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.14
                 HHHHHHHHHHTT-EEESSEE CS
   PTCB-BRCT  13 rkslqklieamGaeyskdlt 32 
                  +++qk +++ G++ +k +t
  KKY14715.1 213 ASKIQKEMTRVGGKGVKYVT 232
                 57889999999998777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1972.84
//
Query:       KKY14722.1  [L=1239]
Description: putative aaa atpase domain containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-07   29.1   3.2    9.2e-06   25.7   0.4    3.1  2  MMR_HSR1         50S ribosome-binding GTPase
    8.8e-05   22.5   0.1    0.00029   20.8   0.1    1.9  1  RsgA_GTPase      RsgA GTPase
     0.0002   20.8   0.0       0.83    8.9   0.0    2.7  2  AIG1             AIG1 family
    0.00059   20.1   0.3       0.49   10.7   0.0    3.7  3  AAA_22           AAA domain
    0.00076   19.6   3.5     0.0015   18.6   0.3    3.1  1  Dynamin_N        Dynamin family
      0.001   18.8   0.0     0.0025   17.5   0.0    1.6  1  AAA_29           P-loop containing region of AAA domain
     0.0016   18.8   0.0     0.0059   17.0   0.0    1.9  1  AAA_16           AAA ATPase domain
     0.0042   16.6   0.0      0.011   15.3   0.0    1.7  1  AAA_7            P-loop containing dynein motor region
     0.0046   16.3   0.2      0.019   14.2   0.2    2.0  1  Septin           Septin
     0.0051   15.9   0.1      0.029   13.5   0.0    2.0  2  T2SSE            Type II/IV secretion system protein
  ------ inclusion threshold ------
       0.01   14.9   0.1       0.03   13.4   0.1    1.8  1  IIGP             Interferon-inducible GTPase (IIGP)
      0.013   16.0   1.5      0.041   14.4   0.0    2.6  2  ABC_tran         ABC transporter
      0.016   14.5   0.0      0.049   13.0   0.0    1.8  2  FtsK_SpoIIIE     FtsK/SpoIIIE family
      0.018   14.6   0.0       0.21   11.2   0.0    2.4  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.039   13.7   0.0       0.13   11.9   0.0    2.0  1  AAA_24           AAA domain
       0.04   13.6   0.0      0.083   12.6   0.0    1.4  1  Sigma54_activat  Sigma-54 interaction domain
      0.046   14.2   0.1      0.046   14.2   0.1    3.2  2  AAA_23           AAA domain
      0.053   12.4   0.0       0.14   11.1   0.0    1.6  1  AAA_10           AAA-like domain
       0.11   12.1   0.1       0.33   10.4   0.1    1.8  1  GTP_EFTU         Elongation factor Tu GTP binding domain
       0.11   12.7   0.0       0.38   11.0   0.0    2.0  1  Roc              Ras of Complex, Roc, domain of DAPkinase
       0.11   12.5   0.4         52    3.9   0.0    3.5  3  PilJ             Type IV pili methyl-accepting chemotaxis tra
        6.2    7.3  12.1        8.7    6.9   0.3    3.8  4  IZUMO            Izumo sperm-egg fusion, Ig domain-associated


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.4   1.1e-08   9.2e-06       2      86 ..     588     727 ..     587     754 .. 0.57
   2 ?   -2.2   0.1       5.2   4.3e+03      70     103 ..    1010    1037 ..     986    1048 .. 0.55

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.1e-08
                 EEEEESTTSSHHHHHHHHHT................................................S.TEEESSSTTSSSSEEEEEEEETTEEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg................................................e.kaivsdkpgtTrdinegrvklkgkeielv 51 
                 ++i+G + vGKSt+ina ++                                                + +   s  + +T++++ + v+++ + i+l+
  KKY14722.1 588 ILILGETGVGKSTFINAFVNyltfptldeamkageleslipcsfstqkmdrsrpdssiqqieikvgsrSdEHDGSTGASATQETKVYAVTIGTRTIRLI 686
                 89*****************6666666665554444444444433333333333333333333333221112233334455555555555555666**** PP

                 ECGGC.....SSHHHHHH.HHHHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1  52 DtpGl.....iegaseek.glgkaflaleeadlillvvdas 86 
                 DtpG+      e ++++  ++ +++ + ++ + il++++++
  KKY14722.1 687 DTPGIgdtrgPEYDRKNMaDILRTLSNYDSLHGILILLKSN 727
                 ****5333321222223345555555555568888887744 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.2
                  HHHHHCTSEEEEEEETTTTCSHHHHHHHHHHHHH CS
    MMR_HSR1   70 flaleeadlillvvdaseeklkpldeeleellee 103 
                  ++ +  +d+il         +k+l++++ee+++e
  KKY14722.1 1010 LK-VHATDVILKTTA-----IKNLEKTIEEYKQE 1037
                  22.222344444443.....45556666666543 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   3.6e-07   0.00029     100     162 ..     586     692 ..     551     695 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 3.6e-07
                  SEEEEECSTTSSHHHHHHHHCTT.......................................-----S------..--------SEEEEEETTTE... CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpe.......................................lelktgevsekl..grGkhTTtavellelaegg... 153
                    ++++G++GvGKSt+ina+++                                         e+k+g+ s+++  ++G   T++++++++  g+   
   KKY14722.1 586 LNILILGETGVGKSTFINAFVNYltfptldeamkageleslipcsfstqkmdrsrpdssiqqIEIKVGSRSDEHdgSTGASATQETKVYAVTIGTrti 683
                  345679****************999**********************************988888999888765225899*********999765222 PP

                  EEESS-SSS CS
  RsgA_GTPase 154 lliDtPGfr 162
                   liDtPG+ 
   KKY14722.1 684 RLIDTPGIG 692
                  699****96 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0011      0.93       1      26 [.     586     611 ..     586     620 .. 0.87
   2 !    8.9   0.0     0.001      0.83      33     107 ..     665     742 ..     659     777 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0011
                 EEEEEESSTTSSHHHHHHHHHTS--S CS
        AIG1   1 ltivlvGktgnGkSaTgNsilgkkaF 26 
                 l+i+++G tg+GkS+ +N+ ++   F
  KKY14722.1 586 LNILILGETGVGKSTFINAFVNYLTF 611
                 69****************98877666 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.001
                 S---SS-EEEEEEETTEEEEEEE--SCCCTTC..CHHCHHHHHHHHHHHCTT-ESEEEEEEETT..B-SHHHHHHHHHH CS
        AIG1  33 qsvtkkcqkksrtwdgkkinViDTPglfdlsv..sadkiskeivrclllseegihalllvlslg..rfteedekalktl 107
                 +s t++ + +  t   ++i  iDTPg+ d+     + k   +i r  l + +++h +l+ l+ +  r++   +  + +l
  KKY14722.1 665 ASATQETKVYAVTIGTRTIRLIDTPGIGDTRGpeYDRKNMADILRT-LSNYDSLHGILILLKSNnsRLNITFRFCVTEL 742
                 5678888888889999************998622355666778874.45566688777665544345555555555555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.34   2.8e+02      29      69 ..     491     532 ..     469     553 .. 0.76
   2 !   10.7   0.0    0.0006      0.49       6      29 ..     586     609 ..     581     644 .. 0.88
   3 ?    2.4   0.5      0.22   1.8e+02      18     126 ..    1020    1154 ..    1020    1161 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.34
      AAA_22  29 ldeeakaeeerpevvfvtlpsst.sskdllrellralglelk 69 
                 ld++   +  ++++v++ +p+++ +  +++++++++ + + +
  KKY14722.1 491 LDRRDILKPLKRKLVRIPCPGPNcDKGEVCNWICSQCQAPFE 532
                 444444444788999999999999999999999999887655 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0006
      AAA_22   6 gilvvtGesGtGKTtllrrlleql 29 
                   +++ Ge+G+GK+t ++ +++ l
  KKY14722.1 586 LNILILGETGVGKSTFINAFVNYL 609
                 5689**************998755 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.22
      AAA_22   18 KTtllrrlleqldeeakaee......erpevv....fvtlpsstsskdllrellralglelka...........erlsseellealeqalrarav.. 91  
                  KTt +++l ++ +e+++  +      +r +++    ++t+ ++ +++ l + + +++   + +            r++ eel++ l+++l++ +   
  KKY14722.1 1020 KTTAIKNLEKTIEEYKQEHQqiqtatARFGLFlkewSITPYNDATLAYLDHLIKEEWAKVQAGgnkkrlealqeDRNKHEELVDVLTNNLNSLKSsn 1116
                  9999999999997665555588888777777799999999999999999999999999877777778888888777777788888888888877777 PP

      AAA_22   92 ......ielliiDEaqhlrseealeeLrsllnlsrkgvqli 126 
                        i+ l  + +++l   ++l +L+++ n + k+v++i
  KKY14722.1 1117 snedtyIQPLTEEGVDNL--VKQLYDLKHFGN-NLKSVKMI 1154
                  777777777777777777..677777777777.56666665 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.3   1.9e-06    0.0015       1     116 [.     588     696 ..     588     755 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.9e-06
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---CCS...SSEEEET-EB--CHHHHHHHHHHHHHHHTSSSS--SS-EEEEEEETT CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeaseravkeelkekekkledfsevreeieketekiagankgiskkvillkilsll 99 
                 i+++G++  GKS+++na +    +p+  + + +       ge e+    + + +  ++++ ++++++++ ++ +++++++g+  +  ++ ++++  ++ 
  KKY14722.1 588 ILILGETGVGKSTFINAFVNYLTFPTLDEAMKA-------GELESLIPCSFSTQKMDRSRPDSSIQQIEIKVGSRSDEHDGSTGASATQETKVYAVTIG 679
                 7899******************99999987655.......4444444445557778899**********************9999999*********** PP

                 S-SEEEEE---B-SSSG CS
   Dynamin_N 100 vkgltlvDlPGldsvnk 116
                   ++ l+D+PG+ ++  
  KKY14722.1 680 TRTIRLIDTPGIGDTRG 696
                 ************87644 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.1e-06    0.0025      20      47 ..     583     610 ..     573     617 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.1e-06
      AAA_29  20 dlkg.atlltGpsGsGKSTllDAiqalLv 47 
                 + ++ ++l+ G++G+GKST++ A+   L+
  KKY14722.1 583 S-ENlNILILGETGVGKSTFINAFVNYLT 610
                 4.33589****************987776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   7.2e-06    0.0059      11      48 ..     572     609 ..     568     640 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 7.2e-06
      AAA_16  11 qLlsalervrsgrpelvllsGesGvGKsslvrellral 48 
                 +L ++l+++ +++  ++l+ Ge GvGKs+ ++++ ++l
  KKY14722.1 572 ALFTLLKSLTASENLNILILGETGVGKSTFINAFVNYL 609
                 7899********99******************998765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.3e-05     0.011      12      57 ..     564     609 ..     555     617 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.3e-05
       AAA_7  12 ilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkl 57 
                  +++  +++ ++ l +l  +++ ++l+ G+tG+GK++ i+ +++ l
  KKY14722.1 564 KYIEYSESALFTLLKSLTASENLNILILGETGVGKSTFINAFVNYL 609
                 567778889999999999**********************998765 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2   2.3e-05     0.019       4      33 ..     585     646 ..     583     712 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.3e-05
                 EEEEEEEEBTTSSCCCCCCTTSSSS----................................- CS
      Septin   4 eftlmvvGesglGkttlintlfetdliee................................e 33 
                 ++++++ Ge g+Gk+t+in++++    ++                                +
  KKY14722.1 585 NLNILILGETGVGKSTFINAFVNYLTFPTldeamkageleslipcsfstqkmdrsrpdssiQ 646
                 689*****************998766666555566666666666666655555555554440 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.82   6.7e+02      94     126 ..     348     380 ..     343     388 .. 0.87
   2 !   13.5   0.0   3.5e-05     0.029     120     153 ..     578     609 ..     558     616 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.82
       T2SSE  94 viRkksakeltlddlgaeealkekiaevlrkav 126
                 v+R+++ ++l+l+ ++ e+a  ++  e+l++ +
  KKY14722.1 348 VLRDQELESLSLESIALERASMQDKVEFLKRMI 380
                 89******************9999999999884 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3.5e-05
       T2SSE 120 evlrkavrerglilvsGgTgsGKttllyallkei 153
                 + l ++  e+ +il+ G Tg GK+t+++a ++++
  KKY14722.1 578 KSLTAS--ENLNILILGETGVGKSTFINAFVNYL 609
                 445555..899*******************9987 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   3.7e-05      0.03      33      55 ..     583     605 ..     571     608 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.7e-05
                 T--EEEEEEESTTSSHHHHHHHH CS
        IIGP  33 saklkiavtGdsGnGkssFinaL 55 
                 s +l+i + G++G Gks+Fina 
  KKY14722.1 583 SENLNILILGETGVGKSTFINAF 605
                 6789*****************95 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     5e-05     0.041       5      34 ..     579     608 ..     578     718 .. 0.83
   2 ?   -1.7   0.1       4.8   3.9e+03      52      92 ..    1022    1048 ..     990    1114 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5e-05
                 EEEEETTSEEEEEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   5 slklkegekvaivGenGaGKStLlkllagl 34 
                 sl+ +e+  + i+Ge+G GKSt+++++ + 
  KKY14722.1 579 SLTASENLNILILGETGVGKSTFINAFVNY 608
                 57778888999**************99765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.8
                  B-HHHCCHCEEEE-SS--S-TTSBHHHHHHHTCHHHHHHHS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   52 qeleslrkeigvlpqepqlfpeltvrenesdeeiekalskl 92  
                  + ++ l+k i+ ++qe+q  ++ t+r              +
  KKY14722.1 1022 TAIKNLEKTIEEYKQEHQQIQTATAR--------------F 1048
                  44455555555555554444444433..............3 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     6e-05     0.049      40      60 ..     586     606 ..     567     612 .. 0.85
   2 ?   -3.9   0.0       8.3   6.8e+03     100     143 ..     846     889 ..     834     914 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6e-05
                   .SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  40 shllvaGatgsGKStalntLi 60 
                    ++l++G tg GKSt++n+++
    KKY14722.1 586 LNILILGETGVGKSTFINAFV 606
                   49*****************97 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 8.3
                   -SHHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHH CS
  FtsK_SpoIIIE 100 tdperalraleeLvkemeeryalfreagvrsiaaydgeiaedpl 143
                   t+    l+  +eL+kem +  a +++    +ia  ++++ + ++
    KKY14722.1 846 TNSTLSLNRTRELIKEMTKPLAEISQLIRTNIALSEDQVNDLKN 889
                   55555566667777777777777777766666665555555444 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00025      0.21      11      46 ..     423     458 ..     422     472 .. 0.89
   2 ?    0.1   0.0      0.66   5.3e+02       3      21 ..     588     606 ..     586     640 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00025
                 CCHHHHHHHHHCT--SS-EEEEESS-SSCHCCCCCC CS
        cobW  11 sGKTtLlnhllenraglklavivNefgevsiDaell 46 
                 sG T+Ll +ll+n++++ +a++ N+  ++  +++ +
  KKY14722.1 423 SGNTALLLKLLQNSNDRYIAILDNDAVQLPFEKTCI 458
                 8************************99888887766 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.66
                 EEEEESTTCCHHHHHHHHH CS
        cobW   3 tvltGflGsGKTtLlnhll 21 
                 +++ G  G GK+t++n+ +
  KKY14722.1 588 ILILGETGVGKSTFINAFV 606
                 5788999********9877 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00016      0.13       2      30 ..     585     612 ..     584     633 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00016
      AAA_24   2 klkiliyGpsgiGKTtlakelgpkplfid 30 
                 +l+ili G+ g+GK+t+++ +  + l + 
  KKY14722.1 585 NLNILILGETGVGKSTFINAF-VNYLTFP 612
                 689****************99.7777665 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0    0.0001     0.083      18      42 ..     581     605 ..     567     617 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.0001
                      HCTSSS-EEEECSTTSSHHHHHHHH CS
  Sigma54_activat  18 vaktdlsvlitGesGtGKellarai 42 
                      +a+ +l++li+Ge+G+GK+++ +a 
       KKY14722.1 581 TASENLNILILGETGVGKSTFINAF 605
                      45667**************998775 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   5.7e-05     0.046      22      45 ..     588     611 ..     574     729 .. 0.78
   2 ?   -2.6   7.8       8.1   6.6e+03     108     178 ..    1018    1111 ..     846    1129 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.7e-05
      AAA_23  22 tlItGpNGaGKTTildAiklaLyg 45 
                  lI G++G GK+T+++A+   L+ 
  KKY14722.1 588 ILILGETGVGKSTFINAFVNYLTF 611
                 49***************9766655 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 8.1
      AAA_23  108 klelleideleqfisellgskki..........ilnlilflgqer...................feefelkdkkerleelekeleeledekkllekl 175 
                  +l+ + i++le++i+e+ +  ++                 l++ +                    ++ +    k+rle+l+++ ++ e+  + l ++
  KKY14722.1 1018 ILKTTAIKNLEKTIEEYKQEHQQiqtatarfglF------LKEWSitpyndatlayldhlikeeWAKVQAGGNKKRLEALQEDRNKHEELVDVLTNN 1108
                  3344444445555554433333322221111111......111112222223333332222221111222334447777777777777766666666 PP

      AAA_23  176 eqe 178 
                  ++ 
  KKY14722.1 1109 LNS 1111
                  444 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00017      0.14      19      47 ..     583     611 ..     577     617 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
      AAA_10  19 tnasasliiGdlGnGKSvlakllvlyisl 47 
                 +++++ li+G++G GKS +++  v+y+++
  KKY14722.1 583 SENLNILILGETGVGKSTFINAFVNYLTF 611
                 678999********************986 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00041      0.33       3      79 ..     585     690 ..     583     693 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00041
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH.HHHST...............................HCHSHHHHHHTSCSSCEEEEEETTCSS CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgeka.eeerv...............................lDtlkeErergiTiksaaisleketkk 69 
                  +ni i+g +  GK+T++ + + ++   + +++ + +e                                   D ++       T ++++  +     +
  KKY14722.1 585 NLNILILGETGVGKSTFINAFVNYLTFPTLDEAMKaGE-LEslipcsfstqkmdrsrpdssiqqieikvgsrSDEHDGSTGASATQETKVYAVT--IGT 680
                 68*******************99988766555444243.2245899988888777777777777776655444444444444455555555555..99* PP

                 EEEEEEEESS CS
    GTP_EFTU  70 ylinliDtPG 79 
                 ++i liDtPG
  KKY14722.1 681 RTIRLIDTPG 690
                 *********9 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00046      0.38       2      21 ..     588     607 ..     587     639 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00046
                 EEEESSTTSSHHHHHHCHCT CS
         Roc   2 vvlvGdsgvGKtsllkrfve 21 
                 ++++G++gvGK+++++ fv+
  KKY14722.1 588 ILILGETGVGKSTFINAFVN 607
                 89****************97 PP

>> PilJ  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.064        52      46      99 ..     276     332 ..     271     345 .. 0.91
   2 ?   -0.3   0.0       1.3     1e+03      41      64 ..    1021    1044 ..    1011    1067 .. 0.82
   3 ?    3.6   0.1     0.079        65      38      74 ..    1089    1125 ..    1076    1167 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.064
        PilJ  46 qlretiaqfdrtlaalrlgdpapgllvpae...avraqleaveqlWqelkkpaeaal 99 
                 ql+e+i++  r+l+  r+++++ +l+  +    ++++q+ +++ + + lk + +++l
  KKY14722.1 276 QLSEKIHVAHRNLNDCRSYALKNRLFLGDIclqNISQQIVELQNKAHHLKTNYARIL 332
                 7999***********************988*******************99997776 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.3
        PilJ   41 aearaqlretiaqfdrtlaalrlg 64  
                  ++a ++l++ti+++ + +++ +  
  KKY14722.1 1021 TTAIKNLEKTIEEYKQEHQQIQTA 1044
                  5677899**********9998765 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.079
        PilJ   38 ydaaearaqlretiaqfdrtlaalrlgdpapgllvpa 74  
                  +  +e+r++ +e ++++ ++l++l++++++ + +  +
  KKY14722.1 1089 EALQEDRNKHEELVDVLTNNLNSLKSSNSNEDTYIQP 1125
                  667999*********************9887666544 PP

>> IZUMO  Izumo sperm-egg fusion, Ig domain-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.1   1.7e+03      32      78 ..     281     327 ..     268     334 .. 0.82
   2 ?   -2.4   0.0       7.7   6.2e+03      76     105 ..     883     913 ..     833     929 .. 0.63
   3 ?    5.2   1.7     0.036        29      37      88 ..     997    1054 ..     976    1078 .. 0.71
   4 ?    6.9   0.3     0.011       8.7      21      75 ..    1091    1144 ..    1076    1157 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.1
                 HHHHHHHHHTTT---SGGGGGGSEEEHHHHHHHHHHHHHHHHHHHHS CS
       IZUMO  32 leraealledlsekelaenkflgvvdeetlekvasslkkelkrltds 78 
                 ++ a+  l+d  +  l++  flg +  +++++  ++l+++ ++l+++
  KKY14722.1 281 IHVAHRNLNDCRSYALKNRLFLGDICLQNISQQIVELQNKAHHLKTN 327
                 55677788888899999999999999999999999999999999876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 7.7
                 HHS---HHHHHH.HHHHHHHHHHHHHHHHHH CS
       IZUMO  76 tdsdlkgelllk.eLlwllqkqkkklkealk 105
                 + +dlk + l   +L + l+ qk +lk    
  KKY14722.1 883 QVNDLKNDRLTGdKLRARLHVQKVQLKPERL 913
                 3344454445444555555666555555444 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.036
                  HHHHTTT......---SGGGGGGSEEEHHHHHHHHHHHHHHHHHHHHS---HHHHHHH CS
       IZUMO   37 alledls......ekelaenkflgvvdeetlekvasslkkelkrltdsdlkgelllke 88  
                  ++++ +        k++a + +l+  + ++lek  ++ k+e +++++ + ++ l+lke
  KKY14722.1  997 ETITVVDeginnkLKVHATDVILKTTAIKNLEKTIEEYKQEHQQIQTATARFGLFLKE 1054
                  2222222333333677889999*********************************997 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.011
                  HHHHSGGHHHHHHHHHHHHHTTT---SGGGGGGSEEEHHHHHHHHHHHHHHHHHH CS
       IZUMO   21 lpselehreklleraealledlsekelaenkflgvvdeetlekvasslkkelkrl 75  
                  l++  +++e+l++ + + l++l++ +++e+++++ ++ee ++++ ++l+ +lk++
  KKY14722.1 1091 LQEDRNKHEELVDVLTNNLNSLKSSNSNEDTYIQPLTEEGVDNLVKQLY-DLKHF 1144
                  44555799***********************************998876.45555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1259  (0.0702214); expected 358.6 (0.02)
Passed bias filter:                      705  (0.0393218); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 1.10u 0.36s 00:00:01.46 Elapsed: 00:00:00.56
# Mc/sec: 6682.85
//
Query:       KKY14723.1  [L=592]
Description: hypothetical protein UCRPC4_g06649 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-15   56.8   0.0    6.5e-15   55.7   0.0    1.6  2  AAA_2            AAA domain (Cdc48 subfamily)
    6.9e-13   48.8   0.0    1.5e-12   47.6   0.0    1.6  1  AAA_5            AAA domain (dynein-related subfamily)
    6.9e-07   29.8   0.0    1.6e-06   28.6   0.0    1.6  1  AAA              ATPase family associated with various cellul
    3.8e-05   23.7   0.1    8.5e-05   22.5   0.1    1.5  1  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
     0.0003   20.2   0.1       0.25   10.7   0.0    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0029   17.7   0.0     0.0091   16.1   0.0    1.8  1  Torsin           Torsin
  ------ inclusion threshold ------
      0.021   14.5   0.0      0.042   13.6   0.0    1.5  1  Sigma54_activat  Sigma-54 interaction domain
      0.022   15.1   0.2       0.76   10.1   0.0    2.7  3  AAA_16           AAA ATPase domain
       0.03   14.4   0.2      0.074   13.1   0.2    1.6  1  Vps51            Vps51/Vps67
      0.046   14.0   0.0       0.24   11.7   0.0    2.4  1  AAA_22           AAA domain
       0.13   12.0   0.0       0.28   10.9   0.0    1.6  1  IstB_IS21        IstB-like ATP binding protein
       0.14   12.3   0.0       0.53   10.4   0.0    2.0  2  AAA_33           AAA domain


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       6.4   9.5e+03      90     119 ..      89     117 ..      84     127 .. 0.64
   2 !   55.7   0.0   4.3e-18   6.5e-15       6     169 ..     297     458 ..     292     460 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6.4
                 ---HHHHHHHHHHHH--EE-------EE-T CS
       AAA_2  90 vSregVqrdLLqileggtltdkqgrkvdtk 119
                 +S   +qr  L  +e +t+t++ +++v+  
  KKY14723.1  89 ISPHSIQRY-LESFERSTVTKNINKTVKGF 117
                 555556655.45688999999888888744 PP

  == domain 2  score: 55.7 bits;  conditional E-value: 4.3e-18
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..............EEEEETGGG----------- CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..............ivllDEidKihpkessgadv 90 
                 + ++gp+g Gktela+ l  ll++    +l ++d++ ++     e   ++l g +p yvg e g               iv+lDE +K +p        
  KKY14723.1 297 LVFAGPSGHGKTELARRLGHLLSL----ELEIVDCTIFTR----E---NELFGPRPPYVGSERGSplnnfiarhdgersIVFLDEFEKTTP-------- 376
                 789********************8....***********9....4...5788999999998888899999999999***************........ PP

                 --HHHHHHHHHHHH--EE-----.--EE-TT-EEEEEE--TTHHHHTTTS-S.....TTTTSGGG--HHHHHHTT--HHHHTT-- CS
       AAA_2  91 SregVqrdLLqileggtltdkqg.rkvdtknilfImtgafgsskisdesrsk.....eeeeekkkeeveeelkkglipEllgRlp 169
                    +V++ LL  +++g+ +d     k+d+++++ I++++   s+i++   ++     ++++e kk e +++l++ l+  +l R++
  KKY14723.1 377 ---EVHQTLLLPFDNGEYQDRRHlTKIDCSKTIWILATNALDSTIKSFCGQNkevlfDSDDELKKMESMKQLSRSLKENFLRRFD 458
                 ...********************9****************99999998887799***99*************************8 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0     1e-15   1.5e-12       3     107 ..     298     402 ..     296     429 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 1e-15
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------....G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar....egeilvlDEveraesevlnsLlslleerrllle 97 
                 +  Gp+G gK+ela+rl ++l  e+e+v +t +t+e++l+g+r +     s + spl + +     e +i++lDE+e+  +ev ++Ll ++++ +++  
  KKY14723.1 298 VFAGPSGHGKTELARRLGHLLSLELEIVDCTIFTRENELFGPRPPY--VGSERGSPLNNFIArhdgERSIVFLDEFEKTTPEVHQTLLLPFDNGEYQ-- 392
                 678*****************************************75..444445555544445667*******************************.. PP

                 -SSSEEE--- CS
       AAA_5  98 eggelvkakn 107
                 ++++l+k + 
  KKY14723.1 393 DRRHLTKIDC 402
                 6665555443 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.1e-09   1.6e-06       2     118 ..     298     420 ..     297     430 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.1e-09
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS.........STTHHH.HHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellsk.........yvgese.kkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLl 90 
                 ++ Gp G GKT la+ + + l+ e+  ++++ ++ +         yvg    + +++++++     + si+f+DE+++ +++             ++Ll
  KKY14723.1 298 VFAGPSGHGKTELARRLGHLLSLELEIVDCTIFTREnelfgprppYVGSERgSPLNNFIARHDG--ERSIVFLDEFEKTTPEV-----------HQTLL 383
                 799***************************99996679*******8886651557777755443..35***********9999...........88888 PP

                 HHHHHTTTS.........SSTEEEEEEESSGGGSTHH CS
         AAA  91 teldgvkkk.........eskvivigatnrpdkldpa 118
                   +d+ + +          sk+i+i+atn  d+  + 
  KKY14723.1 384 LPFDNGEYQdrrhltkidCSKTIWILATNALDSTIKS 420
                 88888888889999*9998889*******99987665 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   5.7e-08   8.5e-05      25      70 ..     513     558 ..     503     569 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 5.7e-08
                    TEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHT CS
  ClpB_D2-small  25 gvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeils 70 
                    ++++  + ++ + +ae+ y ++ GAR+L ++++  +ed+l e++l+
     KKY14723.1 513 RLRVRRDASVCRVIAEQEYHQDLGARSLLTAVKTLVEDELVEAYLE 558
                    455566778899******************************9996 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00017      0.25      25      47 ..     297     319 ..     274     330 .. 0.86
   2 !    7.2   0.0     0.002         3     107     159 ..     363     414 ..     351     465 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00017
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsllp 47 
                   l+++Gp+G GKt la+rl  ll+
    KKY14723.1 297 LVFAGPSGHGKTELARRLGHLLS 319
                   6789**************99996 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.002
  Mg_chelatase 107 nGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpc 159
                   + ++fLDE+ + + +v ++L  P+++ge + +r+ +k++   ++  ++a+N  
    KKY14723.1 363 RSIVFLDEFEKTTPEVHQTLLLPFDNGEYQDRRHLTKIDCS-KTIWILATNAL 414
                   6699**************************99999999865.55566666653 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   6.1e-06    0.0091      25      73 ..     267     314 ..     251     321 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.1e-06
                 HH--S-HHHHHHHHHHHHHHHT-SS-SS-EEEEEEE-TTSSHHHHHHHH CS
      Torsin  25 kklfGqhlvkklvvksvkaylenekpkkpLvlsfhGwtGtGknfvaeii 73 
                   l+Gq  +++++++ + +y+  +  kkpLvl f G +G Gk  +a+ +
  KKY14723.1 267 YFLIGQTSAANILLQKLLSYIMVP-GKKPLVLVFAGPSGHGKTELARRL 314
                 5799*****************988.68***************9888765 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.8e-05     0.042      18     125 ..     290     394 ..     269     422 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.8e-05
                      HCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE.HHH...HHTTTSEEEEETGGGS-H CS
  Sigma54_activat  18 vaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk.Glf...ekadgGtlfLDeigelpl 107
                        k++l ++  G sG GK+ lar + +  +    ++  v+c+ +++   e eLFG +   + G+e+      f   +  + +++fLDe ++ ++
       KKY14723.1 290 PGKKPLVLVFAGPSGHGKTELARRLGHLLS---LELEIVDCTIFTR---ENELFGPRP-PYVGSERGSPlNNFiarHDGERSIVFLDEFEKTTP 376
                      33555777889************9965544...3566899999887...69****865.677877776655551113445569*********** PP

                      HHHHHHHHHHHHSEEESB CS
  Sigma54_activat 108 elQekLlrvlqegeverv 125
                      e+ + Ll   ++ge++  
       KKY14723.1 377 EVHQTLLLPFDNGEYQDR 394
                      ************999864 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00051      0.76      11      47 ..     282     317 ..     276     334 .. 0.79
   2 ?    1.6   0.0      0.22   3.3e+02     124     157 ..     353     384 ..     350     398 .. 0.74
   3 ?   -3.7   0.0       9.3   1.4e+04      94     124 ..     428     458 ..     410     472 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00051
      AAA_16  11 qLlsalervrsgrpelvllsGesGvGKsslvrellra 47 
                 +Lls++ +v    p ++++ G+sG GK+ l+r+l + 
  KKY14723.1 282 KLLSYI-MVPGKKPLVLVFAGPSGHGKTELARRLGHL 317
                 444444.57777889999**************99764 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.22
      AAA_16 124 krllallsrderplvlvlDdlqwadeaslqllaa 157
                 ++++  +++d++  +++lD++++  ++ +q l +
  KKY14723.1 353 NNFI--ARHDGERSIVFLDEFEKTTPEVHQTLLL 384
                 5666..55556669********999998888655 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 9.3
      AAA_16  94 leawrekleealaavpelagaeasrllellk 124
                 +  +++  ++ +++ ++l++++++ +l+ + 
  KKY14723.1 428 VLFDSDDELKKMESMKQLSRSLKENFLRRFD 458
                 4444444455566666666666655555554 PP

>> Vps51  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2     5e-05     0.074      36      76 ..     412     451 ..     410     452 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5e-05
       Vps51  36 raldselkalVydnYskLisasdtIrkmksemdkldqklse 76 
                  alds++k+ +++n + L++  d+++km+s m++l+ +l+e
  KKY14723.1 412 NALDSTIKSFCGQNKEVLFDSDDELKKMES-MKQLSRSLKE 451
                 589*************************98.89**998876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00016      0.24       6      30 ..     295     319 ..     291     456 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
      AAA_22   6 gilvvtGesGtGKTtllrrlleqld 30 
                  +lv  G+sG GKT l+rrl + l 
  KKY14723.1 295 LVLVFAGPSGHGKTELARRLGHLLS 319
                 578999**************99984 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00019      0.28       9      69 ..     252     316 ..     244     337 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
   IstB_IS21   9 rlaklpaqktledidfra..arsldkrkvkeLatlsfiekkeni..vllGpsGvGKshlaialgv 69 
                 + akl++ + l  i +    ++s+ +  +++L +   +  k+ +  v+ GpsG GK+ la  lg+
  KKY14723.1 252 QIAKLRNAEALLGIPYFLigQTSAANILLQKLLSYIMVPGKKPLvlVFAGPSGHGKTELARRLGH 316
                 5566665555545544331144555556677777777776666511567************9997 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00036      0.53       1      19 [.     296     314 ..     296     341 .. 0.86
   2 ?   -2.4   0.0       3.2   4.8e+03      20      46 ..     422     448 ..     417     465 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00036
      AAA_33   1 lvllvGlpGsGKstlaerl 19 
                 ++++ G++G GK+ la+rl
  KKY14723.1 296 VLVFAGPSGHGKTELARRL 314
                 789***************8 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.2
      AAA_33  20 lkklgavllssdtlrrrlfgtdqqskt 46 
                 + +++ vl +sd+++++++  +q s +
  KKY14723.1 422 CGQNKEVLFDSDDELKKMESMKQLSRS 448
                 566777889999999999986665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.54
# Mc/sec: 3307.23
//
Query:       KKY14724.1  [L=524]
Description: putative had-superfamily hydrolase subfamily iib [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-10   40.2   0.0      6e-10   39.3   0.0    1.5  1  PMM             Eukaryotic phosphomannomutase
    5.2e-10   39.5   4.0    5.1e-09   36.2   0.0    3.2  2  Hydrolase_3     haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.035   14.5   0.8      0.035   14.5   0.8    3.5  3  LPP             Lipoprotein leucine-zipper
       0.17   11.2  23.2        2.4    7.4  23.1    2.2  1  DUF4407         Domain of unknown function (DUF4407)
       0.23   10.8  32.4      0.017   14.5  23.0    2.7  3  GAS             Growth-arrest specific micro-tubule binding
        1.1    9.5  32.2      0.039   14.2  11.9    3.8  4  TMF_TATA_bd     TATA element modulatory factor 1 TATA binding
        1.9    8.5  38.3      0.075   13.1  17.8    4.0  2  TPR_MLP1_2      TPR/MLP1/MLP2-like protein
        2.6    8.8  11.2         19    6.0   4.8    2.9  2  Cytochrom_B562  Cytochrome b562
        2.6    7.8  22.9       0.99    9.2   7.1    2.3  2  SKA1            Spindle and kinetochore-associated protein 1
        7.1    5.9  25.2       0.15   11.4  14.1    2.3  2  GBP_C           Guanylate-binding protein, C-terminal domain


Domain annotation for each model (and alignments):
>> PMM  Eukaryotic phosphomannomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   3.4e-13     6e-10       3     193 ..     302     495 ..     300     520 .. 0.79

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 3.4e-13
                 HHHHHHCTTSEEEEE-SS-HHHHHHHHS.TTHHHH-S....EEEEGGGTEEEETTEEEEE--HHHHH-HHHHHHHHH.HHHHHHHCS--S--.-S-SEE CS
         PMM   3 eflqklrkkveigvvgGsdlekikeqlagdevldefd....yvfsenGlvaykkgkelasqsiiealgeeklkklin.fvlryladldlPvk.rGtfie 95 
                 e l+ l + ++++v++G d+ + k+q+a +++  + d    + ++  G++ y + +   +   +e +++++ k++++ f  +  a    P k  G+ ie
  KKY14724.1 302 EALADLLSVANVAVISGGDWLQFKKQVA-SRLPTRADlsrlWLMPTTGTKLYTHKNGEWQAVYTELFSDTERKNILEaFEASLEATGFKPEKtWGNRIE 399
                 6788899999****************97.55555555333368999***999998887777788888888888887625555445444465526***** PP

                 EESSEEEE-SS-TTSSHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTSSEEEEEETTTEEEEEETT-SGGGGGGGCTTST...-SEEEEEESS-STTSTT CS
         PMM  96 frngllnvsPiGrnasqeernefeeydkkekireklvealkeefadlgltfsiGGqisfdvfPkgWdktyclqhvekds...fdeihffGdktaeGGnd 191
                  r + +  s +G++a   e++++     +   r+ + ++l++++ +  l+  +GG  s+d+  kg dk y l+++ + s   ++++ f Gd   +GGnd
  KKY14724.1 400 DRGSQITFSALGQEAPISEKEHWD---PNFVKRKVIQADLRKRLPE--LSINMGGATSIDITQKGVDKGYGLKKLCDASgipLSSMIFIGDAIFPGGND 493
                 ******************998764...444444445578****986..67789*********************98876667899************** PP

                 HH CS
         PMM 192 ye 193
                 y 
  KKY14724.1 494 YP 495
                 95 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   4.3       1.4   2.5e+03      92     134 ..      74     117 ..       8     194 .. 0.50
   2 !   36.2   0.0   2.9e-12   5.1e-09       3     212 ..     283     486 ..     282     495 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.4
                  HHTT.CEEEEEESSEEEESTT.THHHHHHHHHCHCTCEEEESHH CS
  Hydrolase_3  92 kenn.veillytedkvyvlnkeksekkkkeeektkkkkeeidse 134
                  +e++ + ++l++++k++ ++++++++++   +k   k  + ++ 
   KKY14724.1  74 QEREtLLAQLEEQQKMFQEKEKEFQDQIAVLQKALAKPVTPRKP 117
                  22223444444444455544444444444444333333333333 PP

  == domain 2  score: 36.2 bits;  conditional E-value: 2.9e-12
                  EEIIIIIS-TTS---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC.....SEEEEGGGTEE...ECTTTEEEEE--B-HHHHHHHHHHHH CS
  Hydrolase_3   3 lDlDGTLlnsdkkisektkeaikklkekgikvviATGRslravlpvleelgld.....lpvialNGali...ddekgkilykstiskedvkeiikllk 92 
                  +DlDGTL  s++ ++e+  ea++ l +     vi+ G  l++ ++v+  l        l ++   G+     +  +++ +y++ +s ++ k+i+++++
   KKY14724.1 283 FDLDGTLAESKQPLKESMGEALADLLSVANVAVISGGDWLQFKKQVASRLPTRadlsrLWLMPTTGTKLythKNGEWQAVYTELFSDTERKNILEAFE 380
                  8**************************999999*****9*********999777787888999****99856666678999999**999999999988 PP

                  HTTCEEEEEESSEEEESTT.THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEEEES-HHHHHHHHHHHHHHCTTTEEEEEESTTEEEEEETT-SHHH CS
  Hydrolase_3  93 ennveillytedkvyvlnkeksekkkkeeektkkkkeeidseeeledeeiakililkdkekldelekelksklnklltitssskgyleimpkgvsKgt 190
                     +e+  ++ +k+++++    e++ ++++ ++  +e   se+e  d +     ++k k    +l+k+l+++     +i   + ++++i++kgv+Kg 
   KKY14724.1 381 A-SLEATGFKPEKTWGNRI---EDRGSQITFSALGQEAPISEKEHWDPN-----FVKRKVIQADLRKRLPEL-----SINMGGATSIDITQKGVDKGY 464
                  7.89999999******999...666666666666666666666666633.....444555555666666666.....999****************** PP

                  HHHHHHHHCT--GGGEEEEESS CS
  Hydrolase_3 191 alkklakelnisleeviafGDg 212
                  +lkkl+   +i+l+ +i +GD+
   KKY14724.1 465 GLKKLCDASGIPLSSMIFIGDA 486
                  *********************6 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   1.1      0.18   3.3e+02       4      31 ..      19      46 ..      16      68 .. 0.80
   2 ?   -1.9   0.7       2.6   4.7e+03      11      31 ..      82     102 ..      80     107 .. 0.81
   3 ?   14.5   0.8     2e-05     0.035       2      39 ..     144     181 ..     143     185 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.18
         LPP  4 eLssqVsqLkskvdqlssdvnsakaaaq 31
                +L ++  +L+++ ++ ++d++ +++a++
  KKY14724.1 19 KLLDENAELNAQLAASKNDLQTIQTALN 46
                4555556788888888888888888765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.6
         LPP  11 qLkskvdqlssdvnsakaaaq 31 
                 qL++++++ +++ ++ +++++
  KKY14724.1  82 QLEEQQKMFQEKEKEFQDQIA 102
                 899999999999999988876 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 2e-05
         LPP   2 ldeLssqVsqLkskvdqlssdvnsakaaaqaakeEAaR 39 
                 +++L++qV++L++ vd+  s + ++++   +a +EA R
  KKY14724.1 144 INNLNKQVQDLQDLVDAKDSALGHMEDGKRKAEQEAIR 181
                 799*********************************98 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  23.1    0.0014       2.4     130     258 ..      55     246 ..       9     252 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0014
     DUF4407 130 a................ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk...........gtgttgvaGkgpaakekkaqldaaqaelae 201
                                  l++e ++l aq+++ q+ ++++e++++++ a +qk l               +++  +v  + +++++  ++++ +++++++
  KKY14724.1  55 LtttkdeleetkqeclsLRQERETLLAQLEEQQKMFQEKEKEFQDQIAVLQKALAKPVtprkplwllskSDESRQVVNNKQSTENFSQEINNLNKQVQD 153
                 03333333333444466777777777777777777777777777777777776665446677******9667777999999999999999999999999 PP

     DUF4407 202 lkakld....................................atarlaalraelaeleaerakeraasqaaaaaddGllarlealdrltkeda 258
                 l++ +d                                    ++a +a++ ael++ ++  ++  a+s++ +++++ l+++++al++ +++++
  KKY14724.1 154 LQDLVDakdsalghmedgkrkaeqeairlgneltmirqvnlnSDASIASRTAELESSRKVSNHFMATSEQLSRENRELATQNRALEEFITSKD 246
                 999999********************************************************************************9988776 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5  23.0   9.6e-06     0.017      45     195 ..      13     163 ..       6     165 .. 0.87
   2 ?   -3.4   8.6       2.8   5.1e+03      82     122 ..     132     172 ..     117     245 .. 0.57
   3 ?   -0.0   0.8      0.26   4.6e+02      44      65 ..     216     237 ..     189     276 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9.6e-06
         GAS  45 nekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevqqktglk 143
                 + + ++++  en +l+ +L + +++++  + +l+ +++   +l+ +k +l+e+++e  +l++e e l  ++e+ +k ++e +k+f++ i  v qk+  k
  KKY14724.1  13 KHQTIEKLLDENAELNAQLAASKNDLQTIQTALNGFDEIVIDLTTTKDELEETKQECLSLRQERETLLAQLEEQQKMFQEKEKEFQDQIA-VLQKALAK 110
                 5677899999*****************************************************************************996.77899999 PP

         GAS 144 nllLekklkalqeelEkke.aqleevlaaanldpaalsavsekleevlesKnq 195
                  +   k l  l+++ E+++ +  ++  ++ + + ++l++  + l++++++K++
  KKY14724.1 111 PVTPRKPLWLLSKSDESRQvVNNKQSTENFSQEINNLNKQVQDLQDLVDAKDS 163
                 99999999999999999984344555666666667777888888888888875 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.8
         GAS  82 kdkqslknlkarlkelekelkdlkwehevleqrfekveker 122
                 + kqs +n  +++++l+k+++dl+   + +   +  +e+ +
  KKY14724.1 132 NNKQSTENFSQEINNLNKQVQDLQDLVDAKDSALGHMEDGK 172
                 34444444444444444444444444444433333333333 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.26
         GAS  44 rnekelseisqenkrlkepLkk 65 
                 +     +++s en++l  + ++
  KKY14724.1 216 HFMATSEQLSRENRELATQNRA 237
                 3333333333333333322222 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2  11.9   2.2e-05     0.039       7      95 ..      10      98 ..       6     106 .. 0.94
   2 ?    2.9   3.7      0.07   1.2e+02       4      56 ..     134     186 ..     124     209 .. 0.66
   3 ?    0.4   4.9       0.4   7.1e+02      22      82 ..     173     233 ..     161     250 .. 0.60
   4 ?   -1.3   0.0       1.4   2.5e+03      20      45 ..     248     273 ..     240     282 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.2e-05
  TMF_TATA_bd  7 agpsvqlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlLellGeksEeve 95
                 +  + q++e+l  e  +l ++la++k++l+++++  +   e +++l+++ +el+e+k+e  +l++e e l  ++e+  ++++ek+ e +
   KKY14724.1 10 NDVKHQTIEKLLDENAELNAQLAASKNDLQTIQTALNGFDEIVIDLTTTKDELEETKQECLSLRQERETLLAQLEEQQKMFQEKEKEFQ 98
                 5678899*****************************************************************************98765 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.07
  TMF_TATA_bd   4 tssagpsvqlverlsseirrlEgElaslkeelerleaerdeareeivklmken 56 
                  ++s+++ +q +++l+++++ l+  + +  + l  +e  +++a++e ++l +e 
   KKY14724.1 134 KQSTENFSQEINNLNKQVQDLQDLVDAKDSALGHMEDGKRKAEQEAIRLGNEL 186
                  34445555556666666666666666666666777777777777777776655 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.4
  TMF_TATA_bd  22 rrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryet 82 
                  r+ E E   l +el+ + +   +  + i++ ++e e+ ++ +++   ++++l+  ++++ t
   KKY14724.1 173 RKAEQEAIRLGNELTMIRQVNLNSDASIASRTAELESSRKVSNHFMATSEQLSRENRELAT 233
                  5666666666666666666666666666666666666666666655555555444443333 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 1.4
  TMF_TATA_bd  20 eirrlEgElaslkeelerleaerdea 45 
                  e+r +E+ +++l e++ rl+++ +e 
   KKY14724.1 248 ELRDKEILCQALYEDIFRLQSSHSEP 273
                  799999999*****999999988775 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1  17.8   4.2e-05     0.075      19     111 ..      15     107 ..       7     110 .. 0.81
   2 ?    3.6   3.1     0.037        66      56      93 ..     127     164 ..     120     191 .. 0.51

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.2e-05
  TPR_MLP1_2  19 eaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekr 111
                 +  +kl     +l++q +  k+  q  ++ l+   e v +l+++++el+e+k+e  +l++e+e++ a+lee+++  +e+++e++++++ l+k 
  KKY14724.1  15 QTIEKLLDENAELNAQLAASKNDLQTIQTALNGFDEIVIDLTTTKDELEETKQECLSLRQERETLLAQLEEQQKMFQEKEKEFQDQIAVLQKA 107
                 344444444556666666666777777778999999999************************************************999986 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.037
  TPR_MLP1_2  56 vkelqalreelnelkaeiaelkaeaesakaeleesees 93 
                 ++++ + ++  ++  +ei++l++++++++  ++++ ++
  KKY14724.1 127 SRQVVNNKQSTENFSQEINNLNKQVQDLQDLVDAKDSA 164
                 44444445555555555555555555555444444433 PP

>> Cytochrom_B562  Cytochrome b562
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   4.8     0.011        19      12      75 ..      28     108 ..      19     111 .. 0.77
   2 ?    5.4   0.4     0.016        29      46      79 ..     129     162 ..     119     179 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.011
  Cytochrom_B562  12 alkqvakaddaeelkkalkelraaaedakeatpsklek..................dseeqkdYqeGldklidqldkaeala 75 
                     + + +a+ +d +++++al+ +++++ d  +++  +le+                   +e+qk +qe  ++++dq++ +++++
      KKY14724.1  28 NAQLAASKNDLQTIQTALNGFDEIVIDLTTTKD-ELEEtkqeclslrqeretllaqLEEQQKMFQEKEKEFQDQIAVLQKAL 108
                     556677889999999999999999999888887.777766677777777777777788888888888888888888887776 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.016
  Cytochrom_B562  46 klekdseeqkdYqeGldklidqldkaealakagk 79 
                     ++ ++++  +++ + +++l +q+++++ l++a +
      KKY14724.1 129 QVVNNKQSTENFSQEINNLNKQVQDLQDLVDAKD 162
                     3444666667777777777777777777776655 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   8.2     0.021        37      16     132 ..       8     122 ..       2     127 .. 0.75
   2 ?    9.2   7.1   0.00055      0.99      21     134 ..     133     245 ..     120     249 .. 0.52

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.021
                 ........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SKA1  16 qdpallkedlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqeklqhlkenlpshlpkktaassaeeskssspeeeeeteskkekeeea 114
                 +++++ +++++k+ +e  +l+ +l++ k  lq+ ++a++   + +    + + +l+ +k++  s  +++++   + e+++++ +e+e++ ++ + +  +
  KKY14724.1   8 EENDVKHQTIEKLLDENAELNAQLAASKNDLQTIQTALNGFDEIVIDLTTTKDELEETKQECLSLRQERETLLAQLEEQQKMFQEKEKEFQD-QIAVLQ 105
                 567788999********************************9777777777777******99998888888888877777777766644443.333333 PP

                 XXXXXXXX-S--SS---- CS
        SKA1 115 ekakkpkkreikevayit 132
                 ++  kp   + k++++++
  KKY14724.1 106 KALAKPVT-PRKPLWLLS 122
                 33333333.556666665 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00055
                 ...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX CS
        SKA1  21 lkedlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqeklqhlkenlpshlpkktaassaeeskssspeeeeeteskke.keeeaekak 118
                  k+  +++++e++ l++++++l++ ++ + +a+ +++ + ++++  ++++  l ++l   + ++++ +s  + +s   e e++ + +++  ++ ++ ++
  KKY14724.1 133 NKQSTENFSQEINNLNKQVQDLQDLVDAKDSALGHME-DGKRKA--EQEAIRLGNEL--TMIRQVNLNSDASIASRTAELESSRKVSNHfMATSEQLSR 226
                 467789****************************999.333333..33333333333..2222222222222222222222222222222222222222 PP

                 XXXX...-S--SS----HH CS
        SKA1 119 kpkk...reikevayitee 134
                 ++++   ++ +  ++it++
  KKY14724.1 227 ENRElatQNRALEEFITSK 245
                 2222222444455566665 PP

>> GBP_C  Guanylate-binding protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  14.1   8.4e-05      0.15     199     297 .]      55     155 ..      14     155 .. 0.86
   2 ?    0.1   3.3      0.24   4.3e+02     201     267 ..     167     232 ..     157     258 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.4e-05
       GBP_C 199 ltakekeieaeqakaeaaeaekelleekqkeeeqrmeakeksleehvkqLkekleeere..klleeqerllekklkeqeellkegfkeeaeslekeike 295
                 lt ++ e e+ +++  ++++e+e l ++ +e++++ ++kek+++++++ L++ l +     k l    +  e+++  +++ ++e+f++e ++l+k++++
  KKY14724.1  55 LTTTKDELEETKQECLSLRQERETLLAQLEEQQKMFQEKEKEFQDQIAVLQKALAKPVTprKPLWLLSKSDESRQVVNNKQSTENFSQEINNLNKQVQD 153
                 677777778888888899************************************986543255556667777888889999****************** PP

       GBP_C 296 lk 297
                 l+
  KKY14724.1 154 LQ 155
                 97 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.24
       GBP_C 201 akekeieaeqakaeaaeaekelleekqkeeeqrmeakeksleehvkqLkekleeereklleeqerll 267
                 + e  +++++++a  + +e  + ++ + ++ ++++++  +le   +++ +++ ++ e+l +e+++l+
  KKY14724.1 167 HMEDGKRKAEQEAIRLGNELTMIRQVNLNSDASIASRTAELESS-RKVSNHFMATSEQLSRENRELA 232
                 44444433333444444444444444444555554444444433.3335555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2308  (0.12873); expected 358.6 (0.02)
Passed bias filter:                      793  (0.04423); expected 358.6 (0.02)
Passed Vit filter:                       123  (0.00686039); expected 17.9 (0.001)
Passed Fwd filter:                        58  (0.00323498); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.21u 0.31s 00:00:01.52 Elapsed: 00:00:00.55
# Mc/sec: 2887.65
//
Query:       KKY14725.1  [L=488]
Description: putative sugar transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-91  305.5  21.1    4.1e-90  302.8  21.1    1.9  1  Sugar_tr  Sugar (and other) transporter
    1.1e-26   93.6  19.0    2.7e-25   89.1  12.3    2.4  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.8  21.1   4.5e-94   4.1e-90      78     452 .]      67     450 ..      13     450 .. 0.92

  Alignments for each domain:
  == domain 1  score: 302.8 bits;  conditional E-value: 4.5e-94
                 HHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-...TTHHHHH CS
    Sugar_tr  78 slliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn...adgwril 173
                 +++++++l+ i++++q +a+ + ++ ++i gR ++G+g Gla +  P+yi+E+Ap+++Rg++++++ql++++G ++ ++++++    ++   ++ w++ 
  KKY14725.1  67 GMAAGCFLVAISTFVQTFAP-RHNLGAFIGGRTILGFGQGLALTAGPVYIGELAPAEIRGKIMTFWQLFYSVGSFICFWVNYACTAHKErlgEWDWKMV 164
                 567789**************.66*************************************************************666666********* PP

                 HHCCHHHHHHHHHHGGGS---HHHHHHTT-HH.HHHHHHHHHHHC.HHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTH CS
    Sugar_tr 174 lglqlvpallllilllflPESPrylvekgkee.eakevlaklrge.edadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGi 270
                 + +ql+ ++l+l ll+ +PE+Pr+++++ ++  +a+++l ++r++ ed + e+ e+ ++le e+e+ + s++ l++ k+vr+rll+++vl+++qq tG 
  KKY14725.1 165 VMFQLLVPVLVLCLLWSIPETPRWYIKRHDDTdAARRTLLRVRDNaEDIENEILEIRKALEFEKEAISSSYSALWKDKSVRKRLLLAFVLNAGQQITGQ 263
                 **************************9988888********666659999*************8888******************************** PP

                 HHHHHHTTTHHHHSS-THH..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH.......HHHHTTSS.....CHHHHHHHHHHH CS
    Sugar_tr 271 naimyysptifenlglsks..llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg.....ivalllvaks..kaasivaivfialfi 360
                  ++  ys+ i++++  s s  +l++++  +  +++t+ a+++vdrfGR+ ll++G++gm +c++i++     +   ++ ++s  +  +i ++++++lfi
  KKY14725.1 264 GSLNSYSTAIYKKVFKSSSkiALINALNATFGIIFTLNAAWTVDRFGRKFLLIIGGIGMGLCMIIVAtvetqT---PVHDGSksSDVAISIVFLLFLFI 359
                 *******************************************************************874444...444444423445555566789** PP

                 HHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 361 alfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 ++++++wg ++w++++E+f+++vR+ a  +a +++++an +++++fpi+++++g +y f++fag++ l ++fv+ff+petk + +ee+++lf
  KKY14725.1 360 FFYKPSWGATVWIISAEMFSMNVRAQAVGMASQTQNIANAIVQQFFPIFLNNCG-FYAFYMFAGINFLLATFVYFFIPETKKVHFEEVDTLF 450
                 ******************************************************.**********************************987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1  12.3     3e-29   2.7e-25      67     351 ..      61     400 ..      40     402 .. 0.75
   2 !    9.3   7.6   5.2e-05      0.47     108     178 ..     372     441 ..     347     458 .. 0.78

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 3e-29
       MFS_1  67 lglllfalg.lllll....fa......sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg..... 149
                 +g++l++ + +++l+    f+      ++l +++ +r + G+g+g++++ag ++i +++p e rg+ + ++++++s+G+ +   +  +++++       
  KKY14725.1  61 VGAILSGMAaGCFLVaistFVqtfaprHNLGAFIGGRTILGFGQGLALTAGPVYIGELAPAEIRGKIMTFWQLFYSVGSFICFWVNYACTAHKErlgew 159
                 5555555553333332223223344888888**********************************************************98877999*5 PP

       MFS_1 150 .Wravfyilaivsllafvlfllllpeepperkrkspkeee...........................kgtgpaplvp.....awkallkdpvlw.illi 214
                  W  v ++  +v +l+ ++  ll   ++++r+  +  ++                               +     +      ++al+kd+ +   ll+
  KKY14725.1 160 dWKMVVMFQLLVPVLV-LC--LLWSIPETPRWYIKRHDDTdaarrtllrvrdnaedieneileirkaLEFE-----KeaissSYSALWKDKSVRkRLLL 250
                 5555555555554444.23..44455666666666655558899999999999888888887776642222.....13333566666666666456788 PP

       MFS_1 215 alllfffgfsg.....lltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt.........ss 299
                 a++l++ g ++     l ++++ + ++v++ s    ++l+ al a +g+i+ l a++ +dr+gr++ l+++++++ l+ +++a + +          s 
  KKY14725.1 251 AFVLNA-GQQItgqgsLNSYSTAIYKKVFKSS--SKIALINALNATFGIIFTLNAAWTVDRFGRKFLLIIGGIGMGLCMIIVATVETQtpvhdgsksS- 345
                 888885.555567888999999977*******..899999*****************************************************95432. PP

       MFS_1 300 avllllvlvliGf.glgfv....fpsllalasdlappeeagtasglfntagslggal 351
                    +++++v++ f + +f+     ++++ + +++++ + +++a+g ++ +++++ a+
  KKY14725.1 346 --DVAISIVFLLFlFIFFYkpswGATVWIISAEMFSMNVRAQAVGMASQTQNIANAI 400
                 ..4444333333313333355568888899999999999********9999999877 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 5.2e-05
       MFS_1 108 aliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeeppe 178
                 ++ a++f+ + r++a+g++s + +++ ++   + ++++ + g+ ++fy++a++ +l++ ++++++pe+++ 
  KKY14725.1 372 IISAEMFSMNVRAQAVGMASQTQNIANAIVQQFFPIFLNNCGF-YAFYMFAGINFLLATFVYFFIPETKKV 441
                 5678999999********************999999999***9.689999999999988866666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       953  (0.0531541); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.53
# Mc/sec: 2761.17
//
Query:       KKY14726.1  [L=351]
Description: putative nad dependent epimerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-12   45.8   0.0    7.6e-12   45.2   0.0    1.3  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.3e-05   24.9   0.0     0.0002   21.0   0.0    2.0  2  NmrA             NmrA-like family
    0.00057   19.0   0.4       0.38    9.7   0.1    2.2  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
     0.0013   18.2   0.0      0.017   14.5   0.0    2.0  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
     0.0033   16.9   0.1     0.0058   16.1   0.1    1.4  1  adh_short        short chain dehydrogenase
     0.0036   16.4   0.0       0.16   11.0   0.0    2.2  2  RmlD_sub_bind    RmlD substrate binding domain
     0.0062   16.6   0.1       0.56   10.2   0.0    2.2  2  Diphtheria_T     Diphtheria toxin, T domain
  ------ inclusion threshold ------
      0.051   13.5   0.0      0.079   12.8   0.0    1.4  1  NAD_binding_10   NAD(P)H-binding
      0.069   12.3   0.1       0.42    9.7   0.0    2.0  2  Polysacc_synt_2  Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   3.8e-15   7.6e-12       1     240 [.       6     242 ..       6     243 .. 0.76

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 3.8e-15
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnll 99 
                 +l+tGa+G+iG+a+++a+ ++g++  gl r +++  + + e++  v +++ d s+ + ++k+ +    +h+  + +  + ++d    +++++++ ++l 
  KKY14726.1   6 VLITGANGYIGNAVCRAFVRAGWTTYGLIRSERSAISLAAEEVLPVIGNIDDISS-HGVIKS-KLSSELHA--IISTTEDIKDYIPHYNNTIRLLRTLS 100
                 79***************************99888888888888889999999884.555554.45555555..44445555555555555566666666 PP

                 HHHHHHTCT.EEEEEEEGGGGTSCSSSSBSTCSTTS--...--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHHHHH CS
   Epimerase 100 eaarkagvk.rllflsSsevYGkdaeqpkeettltgpl...kpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipalirkil 194
                 e + +   +  ++f s +  YG +++     ++  +p       +p a+ K  +    + + ++  ++ + +r++n+yG     ++    +++++++ +
  KKY14726.1 101 ESSTAGRTRpLVIFTSGCKDYGVGPH--FANDAGLKPHteeSLINPPALLKNRATYSQKIFDHTDVFDPVLVRPTNVYGRS---SSYYLAFFKIAAQTA 194
                 6666555556788889999***8887..33333333333446689999999999999999*********************...666666666666666 PP

                 TTS.SSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-ST.TEEEEE CS
   Epimerase 195 egk.qevtllgdgtalRdflyveDvaeaillvlehvdagdk.geiyni 240
                 + k +++++    ++    l+v+D+ +a++++++h+++ +  g+++ni
  KKY14726.1 195 ATKdKPLVIPVRKDSICHALHVDDCGDAYVAIAAHHQREEVvGQAFNI 242
                 66668999999***********************98876555778888 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0     1e-07    0.0002       1      72 [.       6      78 ..       6      91 .. 0.70
   2 ?    1.8   0.0     0.071   1.4e+02     148     224 ..     183     260 ..     173     271 .. 0.61

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1e-07
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEE...ES-TT-HHHHHHHHTT-SEEEE-- CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelv...kgdlddkeslvealkgvdvvfsvt 72
                +l++Ga G++G++v ra+++ag+++  l+R ++s    sl+++ v  v    +d+ ++ ++++ l+    ++++t
  KKY14726.1  6 VLITGANGYIGNAVCRAFVRAGWTTYGLIRSERSAI--SLAAEEVLPVignIDDISSHGVIKSKLSSELHAIIST 78
                79****************************987754..4555555444122344556667766665544444444 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.071
                 -BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHHHHHHHHHH.HHHH.TTEEEEE-S.EEE-HHHHHHHHHHH CS
        NmrA 148 flsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGafvikilkd.prkl.kgkriklag.ntlsgneivelfekk 224
                 +l++++   +++  +++  ++++   ++    l +++D G + ++i+ + +r+   g++ ++++  + ++++i+e +  +
  KKY14726.1 183 YLAFFKIAAQTAATKDK-PLVIPVRKDSICHAL-HVDDCGDAYVAIAAHhQREEvVGQAFNISShRYETVEDIAESLINE 260
                 44444443334444443.677788788766667.99****9888777765444448888887651556788888765444 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00094       1.9       1      21 [.       7      27 ..       7      36 .. 0.91
   2 !    9.7   0.1   0.00019      0.38     175     272 ..     169     265 ..     156     270 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00094
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrle 21
                ++tG+ G++G+a+++++vr++
  KKY14726.1  7 LITGANGYIGNAVCRAFVRAG 27
                69****************986 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00019
   3Beta_HSD 175 aLRpagiyGegdkllvpllk....qlaklglalfkigdeevlsdrvYvgNvawahilAaralqdpkkkssvagqayfisddsPvesyddfnltllkelg 269
                  +Rp+ +yG  ++  ++++k    ++a + + l+  + ++++     v+   +a++  a      +++++v gqa+ is +   +  +d++  l++e+g
  KKY14726.1 169 LVRPTNVYGRSSSYYLAFFKiaaqTAATKDKPLVIPVRKDSICHALHVDDCGDAYVAIAA----HHQREEVVGQAFNISSHRYET-VEDIAESLINEYG 262
                 68********99988777651111444455567888999***************995444....344679*********999887.99********999 PP

   3Beta_HSD 270 lel 272
                 +  
  KKY14726.1 263 IAA 265
                 865 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   8.6e-06     0.017       1      33 [.       7      39 ..       7      55 .. 0.90
   2 ?    1.5   0.0     0.079   1.6e+02     200     266 ..     189     261 ..     142     285 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.6e-06
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsss 33
                   LiTG +G+iG+ +++ +++ g + +g++r + s
     KKY14726.1  7 LITGANGYIGNAVCRAFVRAGWTTYGLIRSERS 39
                   9***************************98765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.079
                    HHHHHHTTS-C-EEC.TTTT-EEEEEEHHHHHHHHHHHHHCSS---EE.....E-TT-EEECHHCHHCCHHCC CS
  GDP_Man_Dehyd 200 avarialgkqevlyl.GnldakRdwghvkDyveamwlmlqqdkpedyv.....iatgethsvrefvelaflel 266
                    ++a++a+ k + l++    d++   +hv+D  +a++++  + + e++v     i++ +  +v++++e  + e 
     KKY14726.1 189 IAAQTAATKDKPLVIpVRKDSICHALHVDDCGDAYVAIAAHHQREEVVgqafnISSHRYETVEDIAESLINEY 261
                    4555556555555554677778888999999999999998887776651111144444444555554444444 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   2.9e-06    0.0058       2      42 ..       5      45 ..       4      65 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.9e-06
                EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHH CS
   adh_short  2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevak 42
                +vl+tGa + IG a++++++++G++++ + rse+ +  +a+
  KKY14726.1  5 TVLITGANGYIGNAVCRAFVRAGWTTYGLIRSERSAISLAA 45
                89************************998888877655554 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   8.1e-05      0.16       2      34 ..       5      37 ..       4      66 .. 0.80
   2 ?    3.2   0.0      0.02        40     144     235 ..     168     265 ..     160     285 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.1e-05
                   EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TTT CS
  RmlD_sub_bind  2 kilvtGanGqlGseLakqlaeeglevlaltree 34
                   ++l+tGanG +G ++ +++ ++g+ +++l r+e
     KKY14726.1  5 TVLITGANGYIGNAVCRAFVRAGWTTYGLIRSE 37
                   69*************************997763 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.02
                    EEEEE-SEESS...SSS-HHHHHHHHHHH-SE...EEEESS-EE--EEHHHHHHHHHHHHHHCHH.GGG-EEEE---BS-EEHHHHHHHHHHHHCH CS
  RmlD_sub_bind 144 livRtswvyge...kgknfvktmlrlakeree...lkvvaDqlgsPTsardlAevllqllekaaeekelagvyHlanegetswlefArailkeaga 233
                    ++vR + vyg+   +   f k   + a+++++   + v +D +    +++d  ++ ++++++  +e+ + + + +++++  +  ++A+  ++e+g 
     KKY14726.1 168 VLVRPTNVYGRsssYYLAFFKIAAQTAATKDKplvIPVRKDSICHALHVDDCGDAYVAIAAHHQREEVVGQAFNISSHRYETVEDIAESLINEYGI 263
                    678999999883333445555556666555543336788999999999************999998888999*******999999**999999988 PP

                    TT CS
  RmlD_sub_bind 234 ds 235
                    ++
     KKY14726.1 264 AA 265
                    55 PP

>> Diphtheria_T  Diphtheria toxin, T domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00028      0.56      17      74 ..      54     112 ..      49     121 .. 0.87
   2 ?    4.0   0.1     0.023        45     121     140 ..     227     246 ..     211     270 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00028
                   HHHHHHSSSHHHHHHHTS--SS--.HHHHHHHHHHHHHHHCTSGGGHHHHHHTSS-GGG CS
  Diphtheria_T  17 kieslkehgpiknkmsespnktvs.eekakqyleefhqtalehpelselktvtgtnpvf 74 
                   +i+ +  hg ik k+s      +s  e  k+y+  + +t      lse  t   t p++
    KKY14726.1  54 NIDDISSHGVIKSKLSSELHAIIStTEDIKDYIPHYNNTIRLLRTLSESSTAGRTRPLV 112
                   5889999********98888877736999***********999********99999964 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.023
                   EE---SHHHHHHHHHHHHHH CS
  Diphtheria_T 121 avhhnteeivaqsialsslm 140
                   a hh+ ee+v q+  +ss  
    KKY14726.1 227 AAHHQREEVVGQAFNISSHR 246
                   78*************99965 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     4e-05     0.079       1      52 [.      10      59 ..      10     137 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4e-05
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CC CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdve 52
                    GA+G +G ++++  +++g +++  l+R++ ++ +l+ +e++  v g++ d +
      KKY14726.1 10 GANGYIGNAVCRAFVRAG-WTTYGLIRSERSAISLA-AEEVLPVIGNIDDIS 59
                    9****************5.**********9999997.577777777777654 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00021      0.42       1      29 [.       6      34 ..       6      77 .. 0.81
   2 ?   -0.0   0.0      0.19   3.9e+02     132     158 ..     170     196 ..     168     207 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00021
                     EEEETTTSHHHHHHHHHHHHHB-SEEEEE CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilkkkpkkiill 29
                     vl+tGa G iG++++r +++   ++  l+
       KKY14726.1  6 VLITGANGYIGNAVCRAFVRAGWTTYGLI 34
                     89***************999876665555 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.19
                      SS--SHHHHHHHHHHHHHHHGGG--SS CS
  Polysacc_synt_2 132 vnPtnvmGatKrlaekllqalakesee 158
                      v+Ptnv+G +  +   ++  +a+++++
       KKY14726.1 170 VRPTNVYGRSSSYYLAFFKIAAQTAAT 196
                      89******9988776666555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 2133.64
//
Query:       KKY14753.1  [L=443]
Description: putative major facilitator superfamily transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-15   57.0  19.5    9.1e-08   31.4  12.1    2.3  2  MFS_1     Major Facilitator Superfamily
     0.0037   17.5   1.0     0.0063   16.7   1.0    1.3  1  CD47      CD47 transmembrane region
  ------ inclusion threshold ------
       0.33   10.9   9.7        1.2    9.2   0.0    4.8  5  DUF485    Protein of unknown function, DUF485
       0.66    8.2   4.4       0.89    7.8   4.4    1.1  1  DUF2070   Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.2   2.8e-11   1.3e-07       2      80 ..      91     169 ..      90     190 .. 0.90
   2 !   31.4  12.1     2e-11   9.1e-08     196     351 ..     205     360 ..     170     362 .. 0.74

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2.8e-11
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll 80 
                 ++++ +  ++ + lg+ +   l ed ++ ++e+++l+t+++ +++v+ +p  +l +r++  r l + +l++++++l+l 
  KKY14753.1  91 WFCYGIQQTDKTSLGTQALFGLREDTNLKGQEYQWLTTIFYMTYLVGEFPSNFLLQRWSLGRALSIYMLCWGICFLMLG 169
                 788889999999999888889*****************************************************55554 PP

  == domain 2  score: 31.4 bits;  conditional E-value: 2e-11
       MFS_1 196 lvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallll..llaalgla 292
                 + +  ++ ++dp+lw+ +i ++l ++ + g++t+  l+    +g++  l+++l+   + +v++ l++++g +s+++++rr+ ++a + +   +++lg+ 
  KKY14753.1 205 WPQ-VSEAFRDPQLWFSMINAFLSSVPNGGITTFGSLI-LGSFGFT-TLQVLLVGLPYNVVSVSLFIVVGIYSRKVKNRRMYIMAAATIppCIGFLGMS 300
                 334.7889*******999999999989999*******7.*******.677777777777777777**********998555555444332256666666 PP

       MFS_1 293 llavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggal 351
                 ll+ + +  ++ ++++l+++ ++   f +++ + s++a++ +   +s+++ + +++g + 
  KKY14753.1 301 LLPDSAEMKWTKWGMYLMTVpFVLSLFLAWTLIPSNVAGRTKKTIISSATFLGYCVGNMC 360
                 666668888888899998887777789999999999999888888888888999999875 PP

>> CD47  CD47 transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.0   1.4e-06    0.0063      14      94 ..     264     345 ..     252     361 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.4e-06
        CD47  14 wgqlgiitlkyksvskklilllvagliitlivvvgaillipgeysvkkaiGlvLivlpavilivlqyllfkkvl.kltsfvi 94 
                  + ++++ +  ++v+++ +++++a+ i   i + g +ll ++  +   + G+ L+++p v++++l   l  + + + t+++i
  KKY14753.1 264 VSLFIVVGIYSRKVKNRRMYIMAAATIPPCIGFLGMSLLPDSAEMKWTKWGMYLMTVPFVLSLFLAWTLIPSNVaGRTKKTI 345
                 5567888888888999***********************999999********************98776655534444444 PP

>> DUF485  Protein of unknown function, DUF485
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.13   5.7e+02       4      24 ..      73      93 ..      71      96 .. 0.87
   2 ?    1.0   0.3     0.093   4.2e+02      12      34 ..     146     168 ..     141     172 .. 0.87
   3 ?    1.0   0.1     0.091   4.1e+02      60      77 ..     261     278 ..     245     286 .. 0.78
   4 ?   -0.6   0.2      0.29   1.3e+03      50      70 ..     310     330 ..     278     333 .. 0.79
   5 ?    9.2   0.0   0.00026       1.2      21      86 ..     344     411 ..     337     413 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.13
      DUF485  4 pkFqeLvrkrrrfafpltaif 24
                +++++L+rk  r+ +pl+ ++
  KKY14753.1 73 EEYRKLKRKIDRYLLPLMWFC 93
                68**************99876 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.093
      DUF485  12 krrrfafpltaiflvvYfgfvll 34 
                 +r++++  l++ +l++ ++f++l
  KKY14753.1 146 QRWSLGRALSIYMLCWGICFLML 168
                 78999999********9999987 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.091
      DUF485  60 lqivltflltglYvrrAn 77 
                 ++ v+ f+++g+Y+r+ +
  KKY14753.1 261 VVSVSLFIVVGIYSRKVK 278
                 356899999****99865 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.29
      DUF485  50 nitvglllgllqivltflltg 70 
                  + +g+ l+ + +vl+  l++
  KKY14753.1 310 WTKWGMYLMTVPFVLSLFLAW 330
                 567899999999999988887 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.00026
      DUF485  21 taiflvvYfgfvllvafapdllatkvgeg..nitvglllgllqivltflltglYvrrAnrefDplaee 86 
                 t+i  + ++g+ +  +   ++++ k ++     t+g  ++l+  ++ + l  +Y  + n++ D++++e
  KKY14753.1 344 TIISSATFLGYCVGNMCGSQIFKSKDAPRyiPGTIGCTICLGAQFILISLWRAYYVWQNKKRDKEVQE 411
                 4444455555555555555555555444423448999999998888888899999999999***9997 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   4.4    0.0002      0.89      37     128 ..     236     338 ..     211     396 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0002
     DUF2070  37 k............lfgillfglpalvaflltlpvlrilggrltykrslflalltelivviisllaillsall....qalvllalvlslalvfalrllvl 119
                                ++ll+glp+ v  + +  v+ i++++++ +r ++++++++++ +i +l  +ll        +++ ++     +++ f+l+l++ 
  KKY14753.1 236 TfgslilgsfgftTLQVLLVGLPYNVVSVSLFIVVGIYSRKVK-NRRMYIMAAATIPPCIGFLGMSLLPDSAemkwTKWGMYL----MTVPFVLSLFLA 329
                 2223355556666789**********************99998.555666666677777755555554422234444444444....445555555555 PP

     DUF2070 120 vavsdesll 128
                 +++  +++ 
  KKY14753.1 330 WTLIPSNVA 338
                 555444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.49
# Mc/sec: 2731.41
//
Query:       KKY14754.1  [L=676]
Description: putative rna processing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-28  100.1   0.0    2.3e-28   99.3   0.0    1.4  1  CLP1_P          mRNA cleavage and polyadenylation factor CLP1
    0.00069   20.0   0.0     0.0034   17.7   0.0    2.2  2  RNA_helicase    RNA helicase
     0.0072   16.9   0.0      0.021   15.3   0.0    1.8  1  AAA_18          AAA domain
  ------ inclusion threshold ------
      0.027   14.9   0.0      0.057   13.8   0.0    1.5  1  AAA             ATPase family associated with various cellula
      0.048   13.4   0.4       0.14   11.9   0.0    1.9  2  Cytidylate_kin  Cytidylate kinase
        0.2   11.4   0.0       0.31   10.7   0.0    1.3  1  AAA_24          AAA domain


Domain annotation for each model (and alignments):
>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.0   7.7e-32   2.3e-28       1     187 [.     228     432 ..     228     433 .. 0.84

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 7.7e-32
      CLP1_P   1 GpkdsGKSTlarlLlNyalrkgr..........kpvyvDlDvGqseispPgtislalverpi..........dveegfsldaplv.yffGdtspsdnps 78 
                 Gpk++GKST+a++++N +l+ ++           ++++DlD+Gq+e++pPgt+sl+ +++p+          + + ++++da ++ +f G+t+p+ +p 
  KKY14754.1 228 GPKNTGKSTMAKYIANHLLSPYEntgkhwsendGVAILDLDPGQPEFGPPGTLSLVHLRSPLfgpsythplqHASLNTRKDAIIHqHFLGSTTPRASPG 326
                 9******************64442222333333688**************************999999997666666666776652666********** PP

      CLP1_P  79 lylalvkelareveekleenkkakasgliIntpGwvkglgaellleliealepdvvvvldqeellnelkrdlplskvkvvklpkspgvvqrsreerrel 177
                  y++++ +l+ ++++       +++ +liIn +Gw+ g g++ l+ l++ + p+ v  ++++  ++ ++  +++ + + + l+ ++   + s + + el
  KKY14754.1 327 TYIECILHLLAKYKRLTYY---HQNCHLIINASGWIIGDGLTFLKTLLDEVTPTFVFHMSDSGPEEAIRTLVTQCNHSNTALRLISTQASPSTKPAIEL 422
                 **************54444...699************************************99999999888866666666666666668899999999 PP

      CLP1_P 178 reerireYFy 187
                 r++ +++Y++
  KKY14754.1 423 RKMFLQSYLH 432
                 9999999987 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.1e-06    0.0034       1      33 [.     224     256 ..     224     266 .. 0.84
   2 ?   -2.5   0.0       2.3   6.9e+03      52      70 ..     468     486 ..     462     495 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.1e-06
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkds 33 
                   i+++Gp+++GKSt+ak++a++ll+ ++++ k++
    KKY14754.1 224 ILVCGPKNTGKSTMAKYIANHLLSPYENTGKHW 256
                   689********************8886655554 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.3
  RNA_helicase  52 vvvidDfgqvkdeenpsdl 70 
                   vv+ dD++ + ++++p+++
    KKY14754.1 468 VVLLDDLPTDISGYSPDWV 486
                   8999****99999666554 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   7.2e-06     0.021       1      30 [.     224     254 ..     224     269 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.2e-06
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.gvnlrd 30 
                 Il++G+  +GK+t+ak+++++l +  +n ++
  KKY14754.1 224 ILVCGPKNTGKSTMAKYIANHLLSpYENTGK 254
                 99*****************998224444444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.9e-05     0.057       1      24 [.     224     247 ..     224     266 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.9e-05
                 EEEESSTTSSHHHHHHHHHHHHTH CS
         AAA   1 vllyGppGtGKTllakavakelgv 24 
                 +l++Gp+ tGK+++ak +a++l +
  KKY14754.1 224 ILVCGPKNTGKSTMAKYIANHLLS 247
                 699*****************9854 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.7e-05      0.14       3      31 ..     226     254 ..     224     258 .. 0.91
   2 ?   -1.8   0.4      0.71   2.1e+03     153     190 ..     630     671 ..     625     674 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.7e-05
                     EE-STTSSHHHHHHHHHHHHT-EEEEHHH CS
  Cytidylate_kin   3 iDGPagsGKssvaralaeklglkyldtga 31 
                     + GP  +GKs++a+ +a++l   y +tg+
      KKY14754.1 226 VCGPKNTGKSTMAKYIANHLLSPYENTGK 254
                     67*************************97 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.71
                     HTT----HHHHHHHHHHH.HHH.H..HCTSSS-S---TT-EE CS
  Cytidylate_kin 153 akgtsvsleellaeikeR.Dkl.D..kerevgpLklaedali 190
                     +k  +v+ +ell++i++R D++ D  ++r+ ++L+ +eda +
      KKY14754.1 630 EKAEDVHPAELLNRIHRRhDAVnDfsHQRSDYKLEDSEDAHM 671
                     555667888999999998433322226788889999999876 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0001      0.31       3      33 ..     222     251 ..     220     268 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0001
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfidtek 33 
                 lkil+ Gp  +GK+t+ak +  + l+   e+
  KKY14754.1 222 LKILVCGPKNTGKSTMAKYI-ANHLLSPYEN 251
                 79****************99.8887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 4510.61
//
Query:       KKY14755.1  [L=328]
Description: hypothetical protein UCRPC4_g06647 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-31  109.2   5.3    2.9e-31  109.2   5.3    2.2  2  RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5


Domain annotation for each model (and alignments):
>> RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   9.3      0.38   6.8e+03     149     194 ..      22      68 ..       3      81 .. 0.31
   2 !  109.2   5.3   1.6e-35   2.9e-31       3     190 ..     120     324 ..     119     328 .] 0.71

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.38
                   XXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX...XXXXXX. CS
  RNA_polI_A34 149 kkkekkkkkkkaaeedeeeeapkkkkkkkkkkkekkeee.kkeekee 194
                    +++++ +++++ ++++++ a++ +  ++++++  ++++ ++++ ++
    KKY14755.1  22 GATSSASNQSSSNTSSSKDGATSSSGDSSSDEENVQNQSpAEARTPS 68 
                   22222222222222221122222222222222222221121111111 PP

  == domain 2  score: 109.2 bits;  conditional E-value: 1.6e-35
                   TEEEEEEEEETTS-GGG-S..EE---SSCSEEEE.EETTEEEEEEEGGGCS-GTTEEEEEE-SSSTB-TTSS-B-SEEEEEEE--XXXXXX...... CS
  RNA_polI_A34   3 gkelWlIkaPasvpikslegvevplsgvqtgksvlshkgqdYgiledsdeeekggerlLlpdkkkdgyelaakpisrtlnisevvqlpstd...... 93 
                   +k++W+I+aPas+p++ le  ++++  +++ +++lsh+g +Ygi + + +  ++++  +l   ++  +++ + ++s+ ++i e++++ +t+      
    KKY14755.1 120 DKQVWHITAPASLPMSTLE--TFSIGAIGKDTTILSHQGRKYGIAKIKAS--SSECDCFLLPTSEGCFTQQPFNFSQNYQIYEMPRETDTEhitidn 212
                   8******************..**************************764..666666665566566777779******************999888 PP

                   ....XXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXX............XXXXX..............XXXXXXXXXXXXXXXXXXX.... CS
  RNA_polI_A34  94 ....aepaas....vvpkpprpqpkgLkmRFkPfGsgdgppgtigssseesegekekkkk..............pkakkkekkkkkkkaaeede... 165
                       a+        +++kp r+qp+gL+mR+kPfG  dgp++ + s+++e e   +k+k               +                      
    KKY14755.1 213 ipttAT---TvvpgKYAKPVRKQPPGLRMRYKPFGTDDGPGEGVSSDQSEPEAPRKKHKRhhkrnqgleepivvD------------------Vdap 288
                   764322...25679****************************999999995555555444333333333333331..................0345 PP

                   ...........XXXXXXXXXXXXXXXXXXXX..XXX CS
  RNA_polI_A34 166 ...........eeeapkkkkkkkkkkkekkeeekke 190
                               ee+ +kk+k kk+kk  k+e++ +
    KKY14755.1 289 iipvdspssqaPEETLTKKSKDKKSKKGHKDEKDRK 324
                   566666654443333344444444444444322111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1556  (0.0867868); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.49
# Mc/sec: 2000.59
//
Query:       KKY14861.1  [L=537]
Description: putative non-heme halogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-17   63.6   0.0    6.9e-16   58.1   0.0    2.2  2  Trp_halogenase  Tryptophan halogenase


Domain annotation for each model (and alignments):
>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.1   0.0    0.0019        34      46      88 ..       2      41 ..       1      50 [. 0.84
   2 !   58.1   0.0   3.9e-20   6.9e-16     147     374 ..      52     318 ..      46     343 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.0019
                    -THHHHTHHHHT--HHHHCHHCT-EEE-EEEEESSSSCESEEE CS
  Trp_halogenase 46 ipsirkllrlLgideeeflreteatfKlgikFedWgkkgeryi 88
                    +ps+r++lr++++de   + +  ++ K g+ F + ++k+e y+
      KKY14861.1  2 LPSTRHFLRFIELDET--FDKYGFKQKKGAMF-KLNSKPEVYT 41
                    8*************99..9*************.5566666664 PP

  == domain 2  score: 58.1 bits;  conditional E-value: 3.9e-20
                     -EEEE-HHHHHHHHHHHHHHCT-EEEE-.-EEEEEE-T.TS-......EE.EEEETT..S-EEE-SEEEE-SGGG-IIIIIIT--.....-EEE- CS
  Trp_halogenase 147 yAyhldaalyakfLrrvaearGvtrveg.kvvevqlde.dgr......ve.slrled..greveadlfiDcsGfrgllieqaLkt.....gfedw 225
                     yA+ + +++ ++++ r+a + G ++ +g kv++ + ++ +g+      v+ +   +d    +v++d ++D+sG +g +  + Lk+     g +++
      KKY14861.1  52 YAWNVVRSEADDLMFRHAGKSGAKIFDGvKVNSLEFEPvEGQdgpgrpVSaNWSKKDgsNGTVNFDYVVDASGRAGVVSTKYLKNrrynqGLKNV 146
                     777777777777777777777766666622333333332222111112431334445443469******************99861111134444 PP

                     TTT----EEEEEEEE--H.---SSEEEEE-SSEEEEEEEETTEEEE.EEEE-TTTS.......-HHHHHHHHHHHCT--TTTS-EEEE---EE.. CS
  Trp_halogenase 226 sdvLltdrAlavqvesee.lvepytrataekaGWtWkiPLqhrlgn.Gyvyssaha.......dddeAlaellaeldgkleaeprkirfttGr.. 309
                     + +    +++a  +  ++   +py +a a+++GW+W iPL++ +++ G+v  +a a       d             g+ +   + +++  G   
      KKY14861.1 147 ASWG-YWTGVAPYGVGTPaEGQPYFEALADASGWVWTIPLHNGITSvGVVMNQAVAtarkkemD----------SPSGR-DFYLESLKLVPGImk 229
                     4443.23344433333336789************************999999999844433331..........32222.333355555555555 PP

                     ....................ES-SEETTEEE-CCCTEE--CCCS-HHHHHHH....HHHHHHHT--BTT--HHHHHHHHHHHHHHHHHH CS
  Trp_halogenase 310 ....................rkqawvknvvalGlasgfvePlestsihliqa....alrrLlallpdksdepaaiaefnrevarelerv 374
                                          +++ ++ v   G+a +f++P +s+++hl+ a    a+ +++a + +++de++a++   ++va+ ++r+
      KKY14861.1 230 llekaeltsglksasdlsysASEYASPHVRIAGDAGCFIDPFFSSGVHLAIAsglsAAVTICASMKENVDEKTALKWHSDKVAEGCTRF 318
                     555556666669******98888888888889******************99999999****************999888887766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3527.82
//
Query:       KKY14862.1  [L=190]
Description: putative metallo-beta-lactamase superfamily protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00025   21.0   0.2    0.00075   19.4   0.0    2.0  2  BLACT_WH     Beta-lactamase associated winged helix domain
  ------ inclusion threshold ------
      0.026   14.6   0.0      0.037   14.0   0.0    1.3  1  Lactamase_B  Metallo-beta-lactamase superfamily


Domain annotation for each model (and alignments):
>> BLACT_WH  Beta-lactamase associated winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.57   5.1e+03       9      15 ..       3       9 ..       2       9 .. 0.85
   2 !   19.4   0.0   8.4e-08   0.00075       1      47 []     138     187 ..     138     187 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.57
    BLACT_WH  9 iYkdvpe 15
                +Yk++p+
  KKY14862.1  3 VYKNTPD 9 
                9***996 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 8.4e-08
    BLACT_WH   1 TveelVkviYkdvpeslhpaA.ergvlahLeKLeeeGkVkregd..kgkW 47 
                 Tv e+V  +  dvp+ + ++A e +v  +L KL ++ kV  e     ++W
  KKY14862.1 138 TVREIVTLVHGDVPDDMAKMAlEPSVAEVLLKLAADRKVGFETRvgIKRW 187
                 899******************556***************88765444555 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.1e-06     0.037     102     154 ..       7      59 ..       2      90 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.1e-06
                  CGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSS CS
  Lactamase_B 102 sadkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDalla 154
                  ++d+ + ++e++++++ ++ +l ++  pgh  +h+++ +++++  ftGD +l 
   KKY14862.1   7 TPDPGQLPIEDGQIFETEGATLRAVFSPGHAEDHMCFVLEEENAMFTGDNVLG 59 
                  678899999****************************************8883 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1209.36
//
Query:       KKY14863.1  [L=1743]
Description: putative polyketide synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.7e-73  244.8   0.0    1.7e-72  244.0   0.0    1.4  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    7.8e-39  133.8   5.9    1.2e-38  133.2   0.4    3.2  2  SAT              Starter unit:ACP transacylase in aflatoxin b
      2e-38  132.7   0.0    3.4e-38  131.9   0.0    1.4  1  Acyl_transf_1    Acyl transferase domain
    3.6e-33  114.1   0.7    3.6e-33  114.1   0.7    2.2  3  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    1.7e-13   50.4   0.0    2.9e-13   49.7   0.0    1.3  1  PS-DH            Polyketide synthase dehydratase
    1.3e-12   47.8   0.1    3.3e-12   46.6   0.1    1.7  1  PP-binding       Phosphopantetheine attachment site
    1.3e-06   28.9   0.0    9.3e-06   26.1   0.0    2.4  2  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    2.7e-05   23.7   0.1    5.4e-05   22.7   0.1    1.4  1  Thiolase_N       Thiolase, N-terminal domain


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.0   0.0   7.8e-76   1.7e-72       3     253 .]     370     619 ..     368     619 .. 0.94

  Alignments for each domain:
  == domain 1  score: 244.0 bits;  conditional E-value: 7.8e-76
                    -EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHHHH CS
  ketoacyl-synt   3 pvaivGmgarfPggnd.veefwelLlegrdaiselpadrwdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllleaa 96 
                    + aivGm++r+Pgg++ +e fw+ + +grd  s++padr+d ++++dp+ ++++ ++t++g+f+d    fd+ ff++sp+eae++dp++rl+l++a
     KKY14863.1 370 KLAIVGMSCRLPGGVNnLELFWQIMEQGRDVHSKVPADRFDISTHFDPSGETPNSTETPYGNFIDnPGLFDAGFFNMSPKEAEQTDPMHRLALVTA 465
                    679***********999******************************************************************************* PP

                    HHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHH CS
  ketoacyl-synt  97 wealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqsl 189
                    +eale ag+ p+++ ++    vg + G ++ d+++   l+ +g++  ++  + g   ++++ gri+y++++ Gps+ +dtACsS+l+av+aa+++l
     KKY14863.1 466 YEALEMAGYAPNRTPSTMlgrVGTYYGQASDDWRE---LN-AGQNIGTYG-IPGG-ERAFANGRINYFFKFGGPSFNIDTACSSGLAAVNAACSAL 555
                    ***********999776677799999999999965...55.444567777.5566.8*************************************** PP

                    HTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 190 rsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    ++gead+++aGG +++++p ++a++ + ++ls++g+ck  d +adG+++++GvG vv+krleda
     KKY14863.1 556 WAGEADTVIAGGLNVITSPDNYAMLCRGHFLSKTGQCKVWDSGADGYCRADGVGSVVIKRLEDA 619
                    **************************************************************98 PP

>> SAT  Starter unit:ACP transacylase in aflatoxin biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2   0.4   5.5e-42   1.2e-38       8     197 ..      32     222 ..      28     264 .. 0.89
   2 ?    1.3   0.9      0.11   2.4e+02     104     131 ..     982    1009 ..     955    1089 .. 0.76

  Alignments for each domain:
  == domain 1  score: 133.2 bits;  conditional E-value: 5.5e-42
         SAT   8 advlpeLrkLlqakenplLrsFLekasealraeisrlpaaerkslprftslqeller.ysesglkspalssallciaqlaqfivyleenpeeyps.pes 104
                 ad +  L++  ++k++  L++F+++a++++r+e+s+lp+  ++ +p+f+++  l+++ ++++gl   a++sallcia +a fi ++e ++ ++   ++ 
  KKY14863.1  32 ADLFRRLQQCSKRKQHRCLATFIDEATAVIREEFSKLPQPLKECIPSFQTVLSLADNsKDNRGLLGGAMESALLCIADIALFIGHFEAEGISFDLsKST 130
                 6788899*************************************************9778888999********************9999888886889 PP

         SAT 105 tylvGlCtGllaAaavacskslseLvplaveavrvafrlGlevarvaarle.egsssssesWslavtglseeelekalaefneekglppasrvy 197
                 t l Gl++GllaAaav++s+sl +L  ++ eavrv+frlG++v+  ++ +e ++ + +  +W+++vtgl+ + +++ l+++n e+   +    +
  KKY14863.1 131 TTLSGLSIGLLAAAAVSASSSLYDLALIGAEAVRVSFRLGVHVSSISQGIEeQEPEGDALPWAYVVTGLTPDVVQQELDRYNTETVCAND--SK 222
                 ***************************************************5444444567***********************995543..33 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.11
         SAT  104 stylvGlCtGllaAaavacskslseLvp 131 
                  ++ ++G++ G  aA ava   s s+ + 
  KKY14863.1  982 PSAVIGHSLGEYAALAVAGVISASDAIF 1009
                  5678999999999999987776666554 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.9   0.0   1.5e-41   3.4e-38       1     315 [.     900    1215 ..     900    1219 .. 0.89

  Alignments for each domain:
  == domain 1  score: 131.9 bits;  conditional E-value: 1.5e-41
                     EEEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--TTGGGSHH..HHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TT CS
  Acyl_transf_1    1 vfvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpeglldaiq..fvqpaLaavqialaellkskGvrpaavvGHSl 92  
                     vf f+GqG+  +G   +L+k+ + ++  i ++d+  ++   +    ++ + + +l d+i    +q+a +a++iala  ++  Gv+p av+GHSl
     KKY14863.1  900 VFAFTGQGAFYKGISSQLYKEFPFYQSQIIELDRRGQQ---LGYPSIIPAVDGSLGDDISplLTQVATVAIEIALAKFWEVLGVKPSAVIGHSL 990 
                     799*******************************9888...44567788888778888874479****************************** PP

                     HHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHT..S-EECCEECS...HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCE CS
  Acyl_transf_1   93 GElAaavvagalsseeallavvlrsrlmmqla..gpgdmaavel..aeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgal 182 
                     GE+Aa++vag +s+ +a+  v  r  lm +    g   m++v    a +e   + q+d  +++ n+p+ +visg +e++++  e +++ g+   
     KKY14863.1  991 GEYAALAVAGVISASDAIFLVGKRAELMLKSCtmGSHSMLSVRAspAMIEACEKVQNDYEVSCINGPEDTVISGDKETIAASREALEASGLKCT 1084
                     **************************99876536777899998887778888889*************************************** PP

                     EECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHH.HHHCHHHHHHHHHHHCHCCHCCHHTTS....SSECC-CCEECSSSSCC CS
  Acyl_transf_1  183 venvnvavhspqvdaiadalasaladiaprkpkvakisstsldes.serelsaeywvanlrspvrfaeavlsa....aetiplvfveispHsll 271 
                       +  +a+h  q+d++ +   +  ++++ + p+++ is + +    + ++l a+y ++  r++v f  a+ +a    + + + + v++ pH+  
     KKY14863.1 1085 LLQLPYAFHTGQLDPVLQPFEQVAKHVTFKAPNIPVISPLLSTCVfDGKTLNAQYLRRASRETVNFFGALEAAqemgIIDSKTTWVDVGPHPFC 1178
                     ********************999999999********998888777********************98887774435556789*********** PP

                     HCCCCCCCHHGGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHC CS
  Acyl_transf_1  272 laalektlksaedvksatlvGklkrdltdflvtflyllakahlt 315 
                      a +++  +      s ++v++l+rd ++   t   +la +h  
     KKY14863.1 1179 GAFIRNSTQ------SSQVVPSLRRDEDN-FTTISNSLAFLHCE 1215
                     *99999988......699*********99.56666666666655 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.1   0.7   1.6e-36   3.6e-33       2     116 ..     628     746 ..     627     747 .. 0.96
   2 ?   -3.5   0.2       4.6     1e+04      86     104 ..     985    1003 ..     977    1006 .. 0.80
   3 ?   -4.3   0.1       7.9   1.8e+04       4      99 ..    1314    1327 ..    1310    1337 .. 0.61

  Alignments for each domain:
  == domain 1  score: 114.1 bits;  conditional E-value: 1.6e-36
                      EEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG....SCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C   2 avikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar....kqplavgSvKsniGHle 91 
                      a+i ++a+n++++++s+t+p++ aq++ ++++l +agv+p +v+yve hgtgt++gD++E e++++vf+        +q+l +g+vKsniGH+e
       KKY14863.1 628 ATICAAATNHSANAASITQPHAGAQKDNYRRILHDAGVNPLEVSYVELHGTGTQVGDAVESESVADVFAPLIPrrraDQRLHLGAVKSNIGHGE 721
                      8999******99********************************************************9876667799**************** PP

                      GGHHHHHHHHHHHHHHHTEE--BTT CS
  Ketoacyl-synt_C  92 aAaGvaelikvvlalkhgvipptln 116
                      aAaG+a+l+kv+l++++++ipp+++
       KKY14863.1 722 AAAGIASLLKVLLVYQKNQIPPHIG 746
                      **********************986 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.6
                       HH-B-GGGHHHHHHHHHHH CS
  Ketoacyl-synt_C   86 niGHleaAaGvaelikvvl 104 
                        iGH+++  ++++++ v+ 
       KKY14863.1  985 VIGHSLGEYAALAVAGVIS 1003
                       69**999888888887775 PP

  == domain 3  score: -4.3 bits;  conditional E-value: 7.9
                       EEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGHH CS
  Ketoacyl-synt_C    4 ikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAaG 95  
                       i                                                                                   GH+  + G
       KKY14863.1 1314 I----------------------------------------------------------------------------------KGHTMNGHG 1323
                       3..................................................................................366666666 PP

                       HHHH CS
  Ketoacyl-synt_C   96 vael 99  
                       va+l
       KKY14863.1 1324 VASL 1327
                       6655 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   1.3e-16   2.9e-13       1     293 [.    1285    1589 ..    1285    1593 .. 0.83

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 1.3e-16
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.......-EEEEEEEE----.B--SS-EEEEEEEEE CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltges......kavelrdvsilkalvlpedepvevqlslep 91  
                  h ++ ++v +++++ +     ++++ l  ++ H ++g+ v        mal+    l++          + l ++++l+a + + d++    l+l++
  KKY14863.1 1285 HQIISEQVLETTAEVTALADIMHPDLLASIKGHTMNGHGVASLSIWADMALAISDYLYKRLlpkakdVNMNLSNLEVLHAQIANTDTSSSQLLQLRA 1381
                  6677778888888888888899999999999***********************9999555665555689999***********9996665666666 PP

                  -TTS-E....EEEEEEE-SS-TT....EEEEEEEEEE-----..........--B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--E CS
       PS-DH   92 eedgadrawvefeifSregggee...wtehatGtvrlaegaa..........aaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqgl 175 
                  + d ++    ++ +f +++++++    t  a++ v+++++aa               +ealq+ ++e  +++++ss+  Y+ + +  ++y ++++g+
  KKY14863.1 1382 KLDLST-S--KVDVFWFDEDEGGgisETHYASAAVHFENAAAwttewnrmehLVNGRIEALQRMASEG-QASKLSSSMAYTLF-KNVVDYADKYRGM 1473
                  655555.3..5566555555555569999999****999999*9999988773344556664444444.457899********.999********** PP

                  EEEEEETTEEEEEE---GGGSSTTTT-SB-HHHHHHHHHHG..GG..----------EEEEEEEEEEE-S...-BTS--EEEEEE.----SS-EEEE CS
       PS-DH  176 ralwrgdgealaelrlpeelaggesayvlhPallDaalQllaaal..saeaekadaaylPvaierlrvyrpssaageelwvharl.eeegarsivad 269 
                  +++  +d+ea+a ++l +e++g   +++  P  +D+++++ + +l  s+ ++ +d +y+  ++++ r+  ++ +ag++ ++++r+  +++ +++v+d
  KKY14863.1 1474 KSVVIKDNEAFADITLVNETHG---KWHTPPHWIDSVVHIGGFVLngSDTSNTKDYFYVTPGWDSYRLA-KPLEAGGTYRSYVRMfPSAEPNMYVGD 1566
                  *******************995...59************999999998889******************.6899************99999****** PP

                  EEEE-SS-BEEEEEESEEEEE--X CS
       PS-DH  270 ltlvdedGrvvaeieglrlrrver 293 
                  + +++ d +++    ++++r+v+r
  KKY14863.1 1567 VYVLQ-DNTLIGMTGQMKFRKVPR 1589
                  ****5.666666666677777765 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.1   1.5e-15   3.3e-12       6      67 .]    1678    1739 ..    1676    1739 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 1.5e-15
  PP-binding    6 lvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  ++a+ +g+++ e+++++++ +lG+DSl+++ l  ++++e+++ei++s + e+p+++el a+l
  KKY14863.1 1678 VIARETGLDPTEFHDEASFVELGVDSLMSLVLSEKFRAELQLEINSSLFIECPNIGELKAWL 1739
                  799*******************************************************8875 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.4   3.2e+03      53      98 ..     183     228 ..     174     231 .. 0.81
   2 !   26.1   0.0   4.1e-09   9.3e-06      20     105 ..     771     861 ..     757     866 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.4
  KAsynt_C_assoc  53 eeskeeslprLlvlsgrteeaveallekleehlldaellsllneil 98 
                     +e++ + lp   v+ g t++ v++ l+++++ +  a++ +++++ l
      KKY14863.1 183 QEPEGDALPWAYVVTGLTPDVVQQELDRYNTETVCANDSKIVHYQL 228
                     334456899999******************9999888888887755 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 4.1e-09
  KAsynt_C_assoc  20 tpwpggi.....vgvNsfGfGGsnvHviLksnkkekrkeeskeeslprLlvlsgrteeaveallekleehlldaellsllneilseeisr..l 105
                     t wp+       + vNsfG  G n+ ++L+  +++   +e++  ++++ +++s++++++++ +le+l  +l+++++ +l +  +++  +r  +
      KKY14863.1 771 TLWPKVGgkkryALVNSFGAHGGNTTILLEDGPEKIHVSEDT--RSHHPVTISAKSKNSLKGNLEALLRYLDQHTDTDLGDLSYTTCARRihH 861
                     55554444455599*****************99988888888..999***********************99999988866666555555325 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   2.4e-08   5.4e-05      78     117 ..     534     573 ..     531     592 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.4e-08
                 EEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTT CS
  Thiolase_N  78 avtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsn 117
                 +  ++ +csSgl+av++a+ ++ agead v+agG   ++ 
  KKY14863.1 534 SFNIDTACSSGLAAVNAACSALWAGEADTVIAGGLNVITS 573
                 6789******************************987775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.06u 0.35s 00:00:01.41 Elapsed: 00:00:00.53
# Mc/sec: 9901.08
//
Query:       KKY14864.1  [L=305]
Description: putative nucleotide binding [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-92  309.8   0.2    1.4e-92  309.6   0.2    1.0  1  ParA            NUBPL iron-transfer P-loop NTPase
    1.5e-12   47.7   0.0    1.1e-11   44.9   0.0    2.1  1  CbiA            CobQ/CobB/MinD/ParA nucleotide binding domain
    1.4e-08   34.9   0.1    5.4e-08   33.0   0.1    1.9  1  AAA_31          AAA domain
    1.1e-05   24.7   0.3    0.00055   19.2   0.2    2.8  3  ArsA_ATPase     Anion-transporting ATPase
    0.00011   21.6   0.1    0.00016   21.1   0.1    1.5  1  MipZ            ATPase MipZ
  ------ inclusion threshold ------
      0.011   15.7   0.3      0.024   14.6   0.3    1.6  1  DUF1610         Domain of unknown function (DUF1610)
      0.011   15.5   0.8        5.1    6.9   0.0    2.3  2  AAA_26          AAA domain
       0.02   14.3   0.0          1    8.7   0.0    2.4  3  Fer4_NifH       4Fe-4S iron sulfur cluster binding proteins, 
       0.05   13.2   0.2       0.13   11.8   0.0    1.7  2  AAA_25          AAA domain
       0.13   11.7   0.3       0.42   10.1   0.3    1.8  1  CBP_BcsQ        Cellulose biosynthesis protein BcsQ
       0.16   12.0   0.0       0.31   11.0   0.0    1.4  1  PhnA_Zn_Ribbon  PhnA Zinc-Ribbon


Domain annotation for each model (and alignments):
>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.6   0.2   8.9e-96   1.4e-92       2     245 ..      45     298 ..      44     299 .. 0.93

  Alignments for each domain:
  == domain 1  score: 309.6 bits;  conditional E-value: 8.9e-96
        ParA   2 vkkviavlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgveeekpeqs..ekkliPveakgikvmSigfllesedeavvwrGpmksk 98 
                 v k+iav+S+KGGVGKStv+vnlAl++++ gl++g+lD+Di+Gpsip+ll++++++p +   +++l+P++++g+k mS+g+ll+se+++v wrG m++k
  KKY14864.1  45 VLKTIAVSSAKGGVGKSTVSVNLALSFSRLGLRTGILDTDIFGPSIPTLLNLHDSEPPELstSNQLLPLQNYGLKSMSMGYLLPSEQAPVAWRGLMVMK 143
                 6789*************************************************987754435778********************************** PP

        ParA  99 aikqllkdvewgelDyLiiDlPPGtgDeqltvaqklplagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgfvcpkcgekteifgk.....g 192
                 a++qll++vewg lD+L++DlPPGtgD+qlt+ q+++l+gaviV+tpq+va++d+ k+++mf+++ +kvlG+v+Nms+fvcpkcge+t++f++     g
  KKY14864.1 144 ALQQLLHEVEWGGLDVLVLDLPPGTGDVQLTIGQQVELDGAVIVSTPQDVAFKDAVKGVQMFENMGIKVLGLVQNMSVFVCPKCGEETKVFSHgghgpG 242
                 *******************************************************************************************77555557 PP

        ParA 193 ggeklaeelgvpllgeipldpeireasdegkplvlkepe...seaakaleeiaekv 245
                 g ek ++e+gv++lg++pld +i+e +d+g p++++e++   +  +k +++ia+kv
  KKY14864.1 243 GLEKKCQEMGVEILGDVPLDAAICEDADNGVPTIVAEEKtgtKIRSKYFQDIAAKV 298
                 89******************************888776633234678888888876 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   6.5e-15   1.1e-11       1     126 [.      49     273 ..      49     276 .. 0.89

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 6.5e-15
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................................. 54 
                 ia+ s kGGvGK+t+++nLa +++r glr+  +D+D  +++  +l  l   + p                                             
  KKY14864.1  49 IAVSSAKGGVGKSTVSVNLALSFSRLGLRTGILDTDIFGPSIPTLLNLHDSE-Ppelstsnqllplqnyglksmsmgyllpseqapvawrglmvmkalq 146
                 7999*************************************99544444444.35999***************************************** PP

                 ..................................................CCHCCCHHHHHHCHCHHHH...EEEEEEEEESS.......-TTCHHHHH CS
                 ..................................................xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx....xxxxxxxxxx RF
        CbiA  55 ..................................................dlkrllellealgkkkall.lkiagvvlnrvdgen....eetllkeale 98 
                                                                   d+ ++++++e++g+k+  l  ++  +v  + ++e     +  +   +le
  KKY14864.1 147 qllhevewggldvlvldlppgtgdvqltigqqveldgavivstpqdvafkDAVKGVQMFENMGIKVLGLvQNMSVFVCPKCGEETkvfsHGGHGPGGLE 245
                 **************************************************99999********995555877778888888877311113444556899 PP

                 HHHHHCTS-EEEEEE--CCHCCCCHHTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  99 elkqrygvpvlgviprdeavaeaparge 126
                 + +q++gv++lg +p d a+ e + +g 
  KKY14864.1 246 KKCQEMGVEILGDVPLDAAICEDADNGV 273
                 *9*999**************99998887 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.1   3.3e-11   5.4e-08       2      44 ..      47      89 ..      46     211 .. 0.64

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 3.3e-11
      AAA_31  2 kvIaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQana 44
                k+Ia++  KGGvGK+T svnla ++++lg ++ + D D  + +
  KKY14864.1 47 KTIAVSSAKGGVGKSTVSVNLALSFSRLGLRTGILDTDIFGPS 89
                89***********************************976654 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.2   3.4e-07   0.00055       6      38 ..      52      84 ..      46      99 .. 0.90
   2 ?    0.4   0.0      0.18   2.9e+02     112     136 ..     144     169 ..     136     175 .. 0.82
   3 ?    1.1   0.0      0.11   1.9e+02     210     245 ..     185     221 ..     175     234 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.4e-07
                 EEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase  6 vgGKGGVGKttvsaatavklsekgkkvllistD 38
                  + KGGVGK+tvs  +a+  s+ g ++ ++ tD
   KKY14864.1 52 SSAKGGVGKSTVSVNLALSFSRLGLRTGILDTD 84
                 468************************999999 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.18
                  HHHHHHHHHHCSSSSEEEEESBS.CC CS
  ArsA_ATPase 112 sfeellkyvkeeeydvvvlDtaP.TG 136
                  ++++ll++v+    dv+vlD +P TG
   KKY14864.1 144 ALQQLLHEVEWGGLDVLVLDLPPgTG 169
                  67888888888999*******99555 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.11
                  EEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEE.E CS
  ArsA_ATPase 210 rlVvipEklslkEteRaikeLkkygikvdavivNk.l 245
                  ++V++p  +++k+  + ++ ++++gikv  ++ N  +
   KKY14864.1 185 VIVSTPQDVAFKDAVKGVQMFENMGIKVLGLVQNMsV 221
                  799*************************999998755 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   9.8e-08   0.00016       2      39 ..      48      85 ..      47     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 9.8e-08
                EEEE--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--T CS
        MipZ  2 vivlgnekGGsGksttavhvavaLlkkGarvaaidldl 39
                 i ++  kGG Gkst++v +a ++++ G+r + +d d+
  KKY14864.1 48 TIAVSSAKGGVGKSTVSVNLALSFSRLGLRTGILDTDI 85
                5889999****************************997 PP

>> DUF1610  Domain of unknown function (DUF1610)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.3   1.5e-05     0.024      15      24 .]     220     229 ..     217     229 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.5e-05
     DUF1610  15 vvFpCPNCGE 24 
                 +vF CP+CGE
  KKY14864.1 220 SVFVCPKCGE 229
                 89*******9 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.6    0.0038       6.2       1      33 [.      47      79 ..      47      81 .. 0.88
   2 ?    6.9   0.0    0.0031       5.1     132     192 ..     185     263 ..     168     267 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0038
      AAA_26  1 rtifvtgtdtgvGKTvvslgLvralkrkgvkvg 33
                +ti v++   gvGK++vs  L+ +++r g ++g
  KKY14864.1 47 KTIAVSSAKGGVGKSTVSVNLALSFSRLGLRTG 79
                6999******************99988777765 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0031
      AAA_26 132 ilVargglgtinqllltiealrqknvrvlGvilNk....vrnp...e.............nvetlekksgipvlGvvPylp 192
                 ++V ++++ ++++++  ++++ + +++vlG++ N     +  p   e              +e+ ++  g+++lG vP ++
  KKY14864.1 185 VIVSTPQDVAFKDAVKGVQMFENMGIKVLGLVQNMsvfvC--PkcgEetkvfshgghgpgGLEKKCQEMGVEILGDVPLDA 263
                 7888888889999999999999999999999999865422..224413455555666666777777777799999999775 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00064         1       7      30 ..      54      77 ..      47      96 .. 0.83
   2 ?   -3.1   0.0       2.5   4.1e+03     162     182 ..     199     218 ..     178     225 .. 0.73
   3 ?    3.0   0.0     0.035        57     193     246 ..     244     300 ..     231     303 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00064
   Fer4_NifH  7 GkGGiGksttsqnlsaalaemgkk 30
                 kGG+Gkst s nl+ ++++ g +
  KKY14864.1 54 AKGGVGKSTVSVNLALSFSRLGLR 77
                6**************999988866 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.5
   Fer4_NifH 162 akgiekyaksggvrlgGliin 182
                  kg++ + +  g+++ Gl+ n
  KKY14864.1 199 VKGVQMFENM-GIKVLGLVQN 218
                 5667666654.5777777777 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.035
   Fer4_NifH 193 iekfaeelgtkvlevvPrdeivrkaelrk..ktvieyapese.qakeyrelarkile 246
                 +ek  +e+g+++l  vP+d  + +   +    +v e ++ ++  +k ++++a k+ +
  KKY14864.1 244 LEKKCQEMGVEILGDVPLDAAICEDADNGvpTIVAEEKTGTKiRSKYFQDIAAKVSK 300
                 5677899************9998766554114555555555546888999**99975 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     8e-05      0.13      26      59 ..      42      74 ..      32      85 .. 0.81
   2 ?   -2.8   0.0       2.4   3.9e+03     127     149 ..     142     163 ..     137     163 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8e-05
      AAA_25 26 vkgllpagelallaGapgtGKttlaldlalava.t 59
                ++++l  +++a+  + +g+GK+t+ ++lal+ + +
  KKY14864.1 42 IPNVL--KTIAVSSAKGGVGKSTVSVNLALSFSrL 74
                55564..7889999****************98754 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.4
      AAA_25 127 tadvdaleaaieevegvrlvviD 149
                   ++++l  ++e   g++++v+D
  KKY14864.1 142 MKALQQLLHEVEW-GGLDVLVLD 163
                 5677888888888.899999999 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3   0.00026      0.42       2      38 ..      47      83 ..      46     194 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00026
    CBP_BcsQ  2 kvlalqGvRGGvGttsllaaLawalhelgesvlviDl 38
                k++a++  +GGvG++++++ La ++ +lg +  ++D+
  KKY14864.1 47 KTIAVSSAKGGVGKSTVSVNLALSFSRLGLRTGILDT 83
                6799999*********************998877775 PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00019      0.31      16      28 ..     218     230 ..     210     231 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00019
  PhnA_Zn_Ribbon  16 dgallvCpeCahE 28 
                     + +++vCp+C++E
      KKY14864.1 218 NMSVFVCPKCGEE 230
                     5689*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 1928.31
//
Query:       KKY14865.1  [L=393]
Description: putative oxidoreductase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-11   44.2   0.0    5.8e-11   43.3   0.0    1.4  1  GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fol


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   3.2e-15   5.8e-11       7     119 ..      28     144 ..      26     145 .. 0.91

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 3.2e-15
                   TTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE.....EESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-SS CS
  GFO_IDH_MocA   7 GaGkigskhlrplnesqrleevvalldpdaeraeavaesfgve.....aysdleelladpeidavivatpngtheelakaaleagkhvllEKPlatt 98 
                   G+ +++  hl p+   ++++e+val +++ e+a   ++ +g++     +y   e++++dp++d+v+  ++ ++h++ ++  ++agk+v++E Pl ++
    KKY14865.1  28 GTSWAAAAHL-PYLTWSPKYEIVALQNSSVEKAVISRNIYGLDeskvkVYGRAEDVANDPDVDLVVTSIRVDKHANSVIPSIQAGKDVFVEWPLEAN 123
                   8888899999.777777*****************997777766666669999********************************************* PP

                   HHHHHHHHHHHHHHTS-EEEE CS
  GFO_IDH_MocA  99 veeakelvelaekkgklvsvg 119
                   + +a el +l+++ g++ +vg
    KKY14865.1 124 PLKAGELTDLVKRYGVRNIVG 144
                   ***************998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2816.40
//
Query:       KKY14866.1  [L=782]
Description: putative u1 snrnp-associated protein usp107 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-11   44.6   0.1    2.5e-11   43.7   0.1    1.5  1  PWI       PWI domain


Domain annotation for each model (and alignments):
>> PWI  PWI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.1   1.4e-15   2.5e-11       1      71 [.     707     776 ..     707     777 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 1.4e-15
         PWI   1 dvlkpWIakkitellgfeDdvvieyvlnlLeeekeldpkklqinltgfLek.eaekFvkeLWelllsaqsse 71 
                 ++l+p+++kki+e+lg+ +++++e+v ++L +  +  p  l  +l++ L++ eae+ vk+LW++++ +++se
  KKY14866.1 707 EQLRPFVEKKIVEYLGVLEQMLVEVVETHLRK--HGGPGDLVTELADALGEeEAETLVKKLWRMVIFFSESE 776
                 689***************************76..8*********************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1434  (0.0799822); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.51
# Mc/sec: 4644.84
//
Query:       KKY14867.1  [L=409]
Description: putative oxalate decarboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-37  126.9   0.2    2.1e-18   66.3   0.0    2.1  2  Cupin_1       Cupin
    1.9e-22   78.7   0.2    2.8e-11   42.9   0.0    2.4  2  Cupin_2       Cupin domain
    2.5e-06   27.1   0.1      0.035   13.8   0.0    2.5  2  Cupin_3       Protein of unknown function (DUF861)
      3e-05   23.9   0.1       0.13   12.1   0.0    2.4  2  AraC_binding  AraC-like ligand binding domain


Domain annotation for each model (and alignments):
>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.2   1.2e-19   5.4e-16      26     148 ..      99     215 ..      77     217 .. 0.85
   2 !   66.3   0.0   4.8e-22   2.1e-18       8     121 ..     259     369 ..     252     394 .. 0.79

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 1.2e-19
                 TTTHSSTEEEEEEEE.TTEEEEEEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEEESSSSEEEEEEEESSSTT-EEHS CS
     Cupin_1  26 pglntlgisaarvdlepgglllPhyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqynsgdepavaivvfdtnnpgnqsvl 124
                 p  +   i+aa  +l++g+l+++h+h + +e+ +v qG ++v  v ++   +    kl  Gd++++P+g +h ++  + +++  + +fd+ + + ++v+
  KKY14867.1  99 P--QSHDIAAAQQHLKKGALRELHWH-KVAEWGFVYQGNVLVSAVDENG--KYQVDKLGVGDIWYFPKGQAHTVQGLD-DQNEYLLAFDDGDFNAVGVT 191
                 6..334456666667***********.**************99999998..677777********************5.9999***************9 PP

                 CEH.HHHHTSSBHHHHHHHHTSSHH CS
     Cupin_1 125 aal.fsvlpaLdrevlakafqlage 148
                 + + ++v+++ +++vlak+f+++++
  KKY14867.1 192 FNVaDWVAHT-PTSVLAKNFGVDES 215
                 9999******.***********975 PP

  == domain 2  score: 66.3 bits;  conditional E-value: 4.8e-22
                 E.EEEETTEEEEEESTTTSTTTHSSTEEEEEEEE.TTEEEEEEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEEESSS CS
     Cupin_1   8 p.tieseggrvteansenlpglntlgisaarvdlepgglllPhyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqynsgde 105
                 p t+   gg+++ ++s n+p     +i+aa v l+p+gl+++h+hp a+e++y l+G+gr+  v+ gn    ++ ++++Gd+ v+P +  h++ n+ ++
  KKY14867.1 259 PeTVPGGGGTFYKIDSTNFP--ISTTIAAAYVTLKPKGLRELHWHPTAEEWLYFLNGTGRAS-VFIGN-AAARTFDFTPGDTAVFPDNSGHYIENTSET 353
                 44777889************..666788888888**************************55.55555.3888888*********************** PP

                 SEEEEEEEESSSTT-E CS
     Cupin_1 106 pavaivvfdtnnpgnq 121
                 + +++  +  +++   
  KKY14867.1 354 EDLVWLELYKADRVAD 369
                 ***9998887777444 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.1   4.8e-12   2.1e-08       3      58 ..     109     168 ..     107     179 .. 0.89
   2 !   42.9   0.0   6.3e-15   2.8e-11       2      71 .]     287     362 ..     286     362 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 4.8e-12
                 EEEETTEEEEEECSSSEEEEEEEEESEEEEE.ECTE....EEEEETTEEEEE-TT-EEEEE CS
     Cupin_2   3 velppGesapshrHpgedeffyVleGegelt.vdge....eveleaGdsvyfpagtpHrfr 58 
                 ++l++G+  + h+H+ + e+++V +G + +  vd++    + +l+ Gd++yfp+g+ H++ 
  KKY14867.1 109 QHLKKGALRELHWHKVA-EWGFVYQGNVLVSaVDENgkyqVDKLGVGDIWYFPKGQAHTVQ 168
                 6899999999*******.*********99999**777687889***************986 PP

  == domain 2  score: 42.9 bits;  conditional E-value: 6.3e-15
                 EEEEETTEEEEEECSSSEEEEEEEEESEEEEE.ECTE....EEEEETTEEEEE-TT-EEEEEE-SSS.-EEEEEEE CS
     Cupin_2   2 lvelppGesapshrHpgedeffyVleGegelt.vdge....eveleaGdsvyfpagtpHrfrNtgde.parllvvy 71 
                 +v+l+p +  + h+Hp ++e++y l G+g+     g+    +++ ++Gd+++fp +  H+++Nt+++ ++++l +y
  KKY14867.1 287 YVTLKPKGLRELHWHPTAEEWLYFLNGTGRASvFIGNaaarTFDFTPGDTAVFPDNSGHYIENTSETeDLVWLELY 362
                 799*****99******************9998533555777*************************99****9865 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   7.8e-05      0.35      26      61 ..     125     164 ..     111     170 .. 0.75
   2 !   13.8   0.0   7.8e-06     0.035      19      60 ..     298     343 ..     296     356 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.8e-05
                 EEEEEEEECEEEEEET..TTEE..EEEETTEEEEE-TTEE CS
     Cupin_3  26 dEfcyileGevkvtpe..gget..velraGDlvvlpkgls 61 
                  E  ++ +G+v v +   +g+    +l+ GD++++pkg  
  KKY14867.1 125 AEWGFVYQGNVLVSAVdeNGKYqvDKLGVGDIWYFPKGQA 164
                 56668889998775532266667789***********975 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 7.8e-06
                 EEECESSEEEEEEEECEEEEEETTTEE....EEEETTEEEEE-TTE CS
     Cupin_3  19 frltyeedEfcyileGevkvtpegget....velraGDlvvlpkgl 60 
                 ++++ +++E  y+l G  +  +  g++    + + +GD +v+p ++
  KKY14867.1 298 LHWHPTAEEWLYFLNGTGRASVFIGNAaartFDFTPGDTAVFPDNS 343
                 79******************99977766778************876 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00019      0.87      17      62 ..     118     168 ..     102     181 .. 0.81
   2 !   12.1   0.0     3e-05      0.13      18      68 ..     298     355 ..     292     394 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00019
                   EEETT-SEEEEEEEEE-EEE.EETTEE....EEE-TT-EEEE-TTS-EEEE CS
  AraC_binding  17 pphvhdeyvihyvteGtgrl.rlngrt....ydlgpGdlfLlppgepHdye 62 
                   + h+h  ++++ v +G++ +  ++++       lg Gd+  +p+g+ H+ +
    KKY14867.1 118 ELHWHKVAEWGFVYQGNVLVsAVDENGkyqvDKLGVGDIWYFPKGQAHTVQ 168
                   56******************6555554755445788************987 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3e-05
                   EETT-.SEEEEEEEEE-EEE..EETTEE...EEE-TT-EEEE-TTS-EEEEE-TTS.E CS
  AraC_binding  18 phvhd.eyvihyvteGtgrl..rlngrt...ydlgpGdlfLlppgepHdyesdsed.g 68 
                    h+h+   ++ y++ Gtgr   ++++     +d +pGd   +p +  H++e  se  +
    KKY14867.1 298 LHWHPtAEEWLYFLNGTGRAsvFIGNAAartFDFTPGDTAVFPDNSGHYIENTSETeD 355
                   59***7778*********9853444432555*******************99997544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 2558.95
//
Query:       KKY14868.1  [L=465]
Description: putative 56kda selenium binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-08   33.7   0.0      2e-07   30.2   0.0    2.4  1  SBP56      56kDa selenium binding protein (SBP56)
    0.00011   21.6   0.1       0.06   12.6   0.4    2.5  2  Lactonase  Lactonase, 7-bladed beta-propeller
  ------ inclusion threshold ------
      0.013   15.1   0.1        2.5    7.6   0.0    3.0  4  SGL        SMP-30/Gluconolactonase/LRE-like region


Domain annotation for each model (and alignments):
>> SBP56  56kDa selenium binding protein (SBP56)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   3.3e-11     2e-07      10     342 ..      58     369 ..      49     451 .. 0.75

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 3.3e-11
       SBP56  10 PkeaikapreklayvaaleanteiekpDalavvdvdpesetyskvvhrvelpnlgdelhhfGWnaCsschaedaskerrylivPglrssriyvvdtktd 108
                 P +a + ++ k+ y  + + +++  + D+la+  +d+  +t++ ++  +++p+ g+e hh      s ++++++ +    l +   + +  +  dt+ d
  KKY14868.1  58 PFTASDIKPKKIGYFWTGSGDKK--HKDFLATYSLDD--DTFGTLLWITDVPSSGNEPHHL-----SPSFDGKTLVGGGLLSLLK-TQDTAFYFDTS-D 145
                 55666777778888776665555..99*****99987..589******************7.....5566455555555444443.34556668998.9 PP

       SBP56 109 prkpklvkviepeevaektglsrphtvhClpegeilisalgdaeGegkggillldketfevkgrWekdrekqela.......YDfwyqlrkdvmvsseW 200
                 p +p+ +k   +  +++    s +      p+g  +i+ +g+a G ++g ++  d + f+++ +W +d e +          + +  + +kd++++s++
  KKY14868.1 146 PYRPEFKKSNRA--ILS----SITDELRAKPDGGFFITYMGSAIGTSPGRLVETDAN-FDIIHEWPEDVEGTLNVlgqqfspHGITIDYDKDIILTSDF 237
                 999*99996544..444....566788999***************************.*******998765433300000014455667899******* PP

       SBP56 201 gaPkafekGldledleegkyGkrlhvwdleerkllqtidlgeegqlvlevrflh.dPkkaegfvgvvLsssvfrfykeedek....weaekvieipakk 294
                   P  + k  +     +  + ++l +wdl +r++++ti++ + g +  +v+f+  +P++a   v v L ++v+ +y  ++++     +ae   ++ ++ 
  KKY14868.1 238 VIPLSILKPTT-----GVVHAETLRLWDLPSRTIINTIKIPDAGGIQ-DVKFIPgNPDTAALAVAVGL-AQVWIIYPFQKDSngnqGRAELLYDFGSQY 329
                 ***99976543.....3445679*****************9999875.89998526776666555555.667766654443300013444444444444 PP

       SBP56 295 vegeelpelpglvtDillslDDrflyvsnWltGdlrqydisdpkkPkl 342
                  +        g+ +  ++s D +++yv+      +   disd k+ k+
  KKY14868.1 330 KD--------GIAAYSDVSQDGKYFYVTFSEANHIAALDISDLKNVKR 369
                 44........55566689************************988665 PP

>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0013       7.6     263     306 ..      80     124 ..      48     130 .. 0.74
   2 !   12.6   0.4     1e-05      0.06      86     161 ..     332     398 ..     315     400 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0013
                 TSSTEEEEEEE-TTT.--EEEEEEEE-SSS.--EEEE-TTSSEEE CS
   Lactonase 263 Rgadsiavfavdead.gtltlveevstegkfPRdfaldpsgklll 306
                 + +d +a++++d+++ gtl +++ v++ g+ P +++ + +gk l+
  KKY14868.1  80 KHKDFLATYSLDDDTfGTLLWITDVPSSGNEPHHLSPSFDGKTLV 124
                 337889999997765599999999999999999999988888886 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1e-05
                 S-EEEEEE-TTSSEEEEEETTTTEEEEEEB.TTSEBESECEEEE.....SSTTT-SSTTEEEEEE-TTSSEEEEEE CS
   Lactonase  86 aspchlsvdedgkllavAnYsggsvsvfpldadgslkeasqvlkhegsgpnperqesphaHsvvldpdgkfllvpD 161
                 +  ++ +v++dgk+ +v    ++ ++ +++++ +++k+ ++        p++ +q +  +H+v+l+pd+k+llv+D
  KKY14868.1 332 GIAAYSDVSQDGKYFYVTFSEANHIAALDISDLKNVKRLDD--------PDE-EQPTISPHYVKLTPDQKHLLVTD 398
                 55678889999999999888889999999988777777744........775.889999***************99 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.34     2e+03      89     118 ..      62      88 ..      51     107 .. 0.75
   2 ?    7.6   0.0   0.00042       2.5      81     134 ..     156     208 ..     105     225 .. 0.81
   3 ?   -2.7   0.0      0.59   3.5e+03     143     190 ..     288     334 ..     287     338 .. 0.66
   4 ?    3.7   0.0    0.0067        40     141     167 ..     339     365 ..     337     377 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.34
         SGL  89 NDgvvdpdGrlwfGtmgdeeakgeevgaly 118
                  D++ ++ G +w G+ ++++++     a y
  KKY14868.1  62 SDIKPKKIGYFWTGSGDKKHKDFL---ATY 88 
                 588889999999999998887654...444 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00042
         SGL  81 dekpllrfNDgvvdpdGrlwfGtmgdeeakgeevgalyrldpd.gklervlddlt 134
                     +    +++++pdG ++++ mg  + ++   g l+  d++   ++++ +d+ 
  KKY14868.1 156 RAILSSITDELRAKPDGGFFITYMGSAIGTSP--GRLVETDANfDIIHEWPEDVE 208
                 5555556678999***************9999..********9999999988875 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.59
         SGL 143 pdgktlYlaDsltrkiwaydvdaeggklsnrrvf.adlkkgegepDGla 190
                 pd+  l +a  l++ +  y+++++++  + r  + +d+  +    DG+a
  KKY14868.1 288 PDTAALAVAVGLAQVWIIYPFQKDSNGNQGRAELlYDFGSQY--KDGIA 334
                 666666666677777777777776665555544449998887..69987 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.0067
         SGL 141 wspdgktlYlaDsltrkiwaydvdaeg 167
                 +s+dgk +Y++ s +++i a d+++ +
  KKY14868.1 339 VSQDGKYFYVTFSEANHIAALDISDLK 365
                 699*******************98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 2935.48
//
Query:       KKY14869.1  [L=625]
Description: hypothetical protein UCRPC4_g06636 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-08   32.9   0.1    6.4e-07   29.8   0.0    2.4  3  HET       Heterokaryon incompatibility protein (HET)


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   3.6e-11   6.4e-07       3      82 ..      41     138 ..      40     155 .. 0.76
   2 ?   -1.2   0.0      0.13   2.3e+03     124     146 .]     155     177 ..     146     177 .. 0.84
   3 ?   -1.3   0.0      0.14   2.5e+03       4      40 ..     287     336 ..     285     341 .. 0.66

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 3.6e-11
         HET   3 aLSYvWgdsk..............ekeeievngklleltenledalqvlrklgery......lWiDaiCInQdddkekskqvqlmadIYsnAelvival 81 
                 a+SY+Wg+ +              e  ++e+ g+++e++  + ++  ++ ++ge+y      +WiD++CI Q+ d++ ++ ++++  IY++ ++v  + 
  KKY14869.1  41 AISYTWGEFDrrpvdlghiahrsnEPVQMEL-GQEWEIPDLILTLAMIAIENGEEYgkehaaIWIDQLCIPQT-DEQIRQALAKIPLIYQTLDVVALMP 137
                 9******999999999999987643555555.699999998766666665555544455555***********.7888899999*****9988776665 PP

         HET  82 g 82 
                 g
  KKY14869.1 138 G 138
                 5 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.13
         HET 124 keeraieellespwfkRvWvlQE 146
                 + ++ +++l   ++f+R W  QE
  KKY14869.1 155 EVWKCLNALGLCSYFNRQWPRQE 177
                 5677788888899******9998 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.14
         HET   4 LSYvWgdskekeeievng.............klleltenledalqvlrkl 40 
                 LSY   ++++ ++  ++              k ++l e ++dal++l ++
  KKY14869.1 287 LSYSNRKATNPRDYVISAwvdcpdyevprkfKAMSLAELMDDALRQLEHN 336
                 67776666655554444455555555555668899999999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4279.52
//
Query:       KKY14870.1  [L=459]
Description: hypothetical protein UCRPC4_g06637 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.28   11.3   6.0      0.062   13.4   2.0    1.9  2  DUF2052   Coiled-coil domain containing protein (DUF2052)
        3.3    8.0  11.4        8.9    6.6   0.1    3.5  3  CAF1A     Chromatin assembly factor 1 subunit A
        6.2    7.9  15.5       0.17   12.9   7.9    2.4  3  Spt5_N    Spt5 transcription elongation factor, acidic N-term


Domain annotation for each model (and alignments):
>> DUF2052  Coiled-coil domain containing protein (DUF2052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       0.5     3e+03     165     165 ..     195     195 ..     133     226 .. 0.55
   2 ?   13.4   2.0     1e-05     0.062      83     168 ..     343     444 ..     304     453 .. 0.48

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.5
     DUF2052 165 e 165
                 +
  KKY14870.1 195 Q 195
                 1 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1e-05
     DUF2052  83 eeeeeeeeeeeeeeeeeeeeeedekekaea...........deedeeeeeekeekeeeeekeeeaeaevlseee..............reelreeFtsi 156
                 eeeeeeeeeeeee++  e++   +     +           d    +++ +++e++++  +++++e+e++++e                 e+r+  ++ 
  KKY14870.1 343 EEEEEEEEEEEEEASGGEKGVIIT-----DdkisapipeatD----AQNPASNEEKADIPQDSDTEHEHKTSEAdlrfakqackqllkAAEARNVIIES 432
                 222222222222222333332222.....1234457754442....22222223333333333333333333323333333344344344444444444 PP

     DUF2052 157 mrerFLsGeDee 168
                  +e + +G+D++
  KKY14870.1 433 FSEPYGDGKDNG 444
                 444444666665 PP

>> CAF1A  Chromatin assembly factor 1 subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0015       8.9      26      48 ..      38      60 ..      16      77 .. 0.82
   2 ?    1.8   3.2     0.045   2.7e+02      61      73 ..     342     354 ..     335     363 .. 0.53
   3 ?    3.2   0.1     0.017        99      23      51 ..     377     404 ..     364     417 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0015
       CAF1A 26 arnPfskdekeldYdyDSdaEWe 48
                a+ P + +++++d +  Sd+EW+
  KKY14870.1 38 AKIPHNCEQLTIDHETPSDEEWK 60
                67788899999***********5 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.045
       CAF1A  61 eedeeeeeeddde 73 
                 +e+eeeeee+++e
  KKY14870.1 342 QEEEEEEEEEEEE 354
                 3333333333332 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.017
       CAF1A  23 vvgarnPfskdekeldYdyDSdaEWeeee 51 
                 ++ a+nP s++ek  d   DSd E e + 
  KKY14870.1 377 ATDAQNPASNEEK-ADIPQDSDTEHEHKT 404
                 4558999977666.999999999985533 PP

>> Spt5_N  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1         3   1.8e+04      61      71 ..      24      34 ..      16      43 .. 0.55
   2 ?   -2.1   0.1       1.3   7.8e+03      41      41 ..     184     184 ..     138     216 .. 0.57
   3 ?   12.9   7.9   2.8e-05      0.17       7      81 ..     342     444 ..     335     457 .. 0.45

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3
                XXXXXXXXXXX CS
      Spt5_N 61 edaeeiaeale 71
                +++eei  +l+
  KKY14870.1 24 AKQEEIKSDLR 34
                33444444443 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.3
                 X CS
      Spt5_N  41 s 41 
                 s
  KKY14870.1 184 S 184
                 1 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 2.8e-05
                 XXXXXXXXXXXXXXXXXXXX.......................XXXXXXXXXXXXXXXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXXX CS
      Spt5_N   7 eVdddeeeeeeeeeveggedd......................fiaeeeaeeeeedserddrshreldrrr.........qaeededaeeiaealeeRY 74 
                 + +++eeeeeeeee+ gge+                           +e++ +  ++++++++h+ ++ +            ++ e    i e++ e Y
  KKY14870.1 342 QEEEEEEEEEEEEEASGGEKGviitddkisapipeatdaqnpaS---NEEKADIPQDSDTEHEHKTSEADLrfakqackqLLKAAEARNVIIESFSEPY 437
                 34455577888888888888865555555554444433332210...2222222223333333333333322222222212222244444566666666 PP

                 XXXXXXX CS
      Spt5_N  75 grsskka 81 
                 g+++ + 
  KKY14870.1 438 GDGKDNG 444
                 6655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       855  (0.0476881); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3106.96
//
Query:       KKY14871.1  [L=385]
Description: putative polytopic membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 2520.27
//
Query:       KKY14872.1  [L=1584]
Description: putative btb domain and ankyrin repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-20   72.0   0.4    2.3e-07   31.3   0.0    6.1  6  RCC1      Regulator of chromosome condensation (RCC1) repeat
    3.3e-11   43.4   0.1    2.2e-08   34.3   0.0    2.9  2  BTB       BTB/POZ domain
    4.9e-10   38.9   2.3    5.3e-08   32.4   0.0    4.2  4  RCC1_2    Regulator of chromosome condensation (RCC1) repeat
      6e-07   29.9   0.1      3e-05   24.5   0.0    2.5  2  Ank_4     Ankyrin repeats (many copies)
    1.7e-05   25.3   0.0    4.5e-05   23.9   0.0    1.6  1  Ank_2     Ankyrin repeats (3 copies)
    0.00054   20.2   0.1        3.3    8.6   0.0    3.0  2  Ank_3     Ankyrin repeat
  ------ inclusion threshold ------
      0.059   13.7   0.0         22    5.5   0.0    3.0  3  Ank_5     Ankyrin repeats (many copies)
      0.072   13.6   0.0        6.6    7.4   0.0    2.9  2  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0025       5.5       3      30 ..     230     257 ..     229     264 .. 0.87
   2 !   12.8   0.0   6.1e-05      0.14       4      50 .]     330     378 ..     327     378 .. 0.83
   3 !   31.3   0.0     1e-10   2.3e-07       2      50 .]     382     439 ..     381     439 .. 0.80
   4 !   10.5   0.0   0.00033      0.74       4      41 ..     444     486 ..     442     495 .. 0.62
   5 ?    0.3   0.1      0.49   1.1e+03      30      50 .]     534     554 ..     520     554 .. 0.74
   6 ?   -0.1   0.0      0.67   1.5e+03      23      48 ..     586     615 ..     568     617 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0025
                 EEEEEE--GGGTTSSSS---EEEEEE-G CS
        RCC1   3 rVysWGrndyGqLGlgttesvlvPtkve 30 
                 ++y++G+n +  L lg+++++  P + +
  KKY14872.1 230 ELYTFGSNKNLTLALGDEDDRQFPERPP 257
                 79****************9998887765 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 6.1e-05
                 EEEEE--GGGTTSSSS---E..EEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   4 VysWGrndyGqLGlgttesv..lvPtkveglsgnrvvkvacGddhtval 50 
                 ++  G++  G+LG+g++ ++  lv     gl g+++  va G+dht+a+
  KKY14872.1 330 LFMSGFGPGGRLGTGDETTRfkLVCIDSGGLAGKKIATVALGQDHTIAI 378
                 78889999*********77734555666788888*************97 PP

  == domain 3  score: 31.3 bits;  conditional E-value: 1e-10
                 TEEEEEE--GGGTTSS.......SS---E...EEEEE-GGGTTS.-EEEEEEETTEEEEE CS
        RCC1   2 GrVysWGrndyGqLGl.......gttesv...lvPtkveglsgn.rvvkvacGddhtval 50 
                 G+V++WG+n yGqLG        g++      lvP+++ g++++  +v +a+ + h++ +
  KKY14872.1 382 GEVFTWGSNKYGQLGYslpapsvGQD--IpiqLVPRQLFGSTKReVIVGAAASATHSAII 439
                 9***************8875444333..245689****99999967777********976 PP

  == domain 4  score: 10.5 bits;  conditional E-value: 0.00033
                 EEEEE--GGGTTSSSS-.....--EEEEEE-..GGGTTS-EEEEE CS
        RCC1   4 VysWGrndyGqLGlgtt.....esvlvPtkv..eglsgnrvvkva 41 
                 +y++G+n +GqLGl +      e ++ P++v  + l++  + +va
  KKY14872.1 444 LYTFGKN-DGQLGLMDAdarslEIQTSPRRVgvNVLQS-SIHSVA 486
                 8****66.6*****777433333336699994433333.455555 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.49
                 GGGTTS-EEEEEEETTEEEEE CS
        RCC1  30 eglsgnrvvkvacGddhtval 50 
                 +   +n+++kv++G++  +al
  KKY14872.1 534 TANASNHITKVTSGGNTICAL 554
                 444566*********987775 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 0.67
                 E..EEEEE-GGGTTS..-EEEEEEETTEEE CS
        RCC1  23 v..lvPtkveglsgn..rvvkvacGddhtv 48 
                 +  ++Pt+v + ++    + +va G++ ++
  KKY14872.1 586 NalPIPTRVWSIRKShmAARDVAVGQHGSI 615
                 24588****666655699999****98776 PP

>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0074        17      17      45 ..     767     800 ..     754     881 .. 0.72
   2 !   34.3   0.0   9.9e-12   2.2e-08      12     106 ..     907    1024 ..     898    1027 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0074
                 ETTTEEEEE-HHHHHHH-HHHHHHHTST......T CS
         BTB  17 vgdgkefkahkavLaarSpyFkalftsk......e 45 
                 v  + +++ah ++  arS++++  f +       +
  KKY14872.1 767 VT-KVRIPAHSFIFGARSSILRHAFGEFqhsyffN 800
                 34.799*******************9985554440 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 9.9e-12
                  -EEEEETTTEEEEE-HHHHHHH-HHHHHHHTST.............TTTTCCCE..EEEETTSGHHHHHHHHHHHHHSEEEC-...........CGG CS
         BTB   12 DvtlvvgdgkefkahkavLaarSpyFkalftsk.............eieessvs..eielddvepeafealLefiYtgeleit...........see 82  
                  D+++++ +++e+kah a ++ r p+F+ +f +              ++++   +  +++l+ v+p++f  +L+ iY ++ e             + +
  KKY14872.1  907 DIAIQLANDTEIKAHSALVCLRCPFFEGMFHGRaagkwiasrrdtaNDAA---EpvTVDLKHVDPDIFTLVLRHIYADTGEELfdevlsqdldgFLD 1000
                  89999999*****************************9999876533233...1448*********************9998888899999998888 PP

                  GHHHHHHHHHHHT-HHHHHHHHHH CS
         BTB   83 nleelLaaadllqiprlkkaceef 106 
                   + +++++a+ l ++rl+++ ++ 
  KKY14872.1 1001 VILDVMSVANELMLDRLAQISQKV 1024
                  999999999999999998887765 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       0.3   6.7e+02      18      27 ..     229     238 ..     226     239 .. 0.82
   2 !   32.4   0.0   2.4e-11   5.3e-08       1      30 []     365     394 ..     365     394 .. 0.96
   3 ?   -0.9   0.0      0.69   1.6e+03       5      26 ..     430     450 ..     426     453 .. 0.74
   4 ?    1.7   0.0      0.11   2.5e+02       1      21 [.     541     561 ..     541     562 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.3
      RCC1_2  18 GeVlcWGsNs 27 
                 +e++++GsN 
  KKY14872.1 229 DELYTFGSNK 238
                 68*******6 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 2.4e-11
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                 ++ v+ G +H++a+++ GeV++WGsN +GQ
  KKY14872.1 365 IATVALGQDHTIAISDRGEVFTWGSNKYGQ 394
                 67899************************9 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.69
      RCC1_2   5 saGdyHscaLtedGeVlcWGsN 26 
                 +a + Hs ++t++  ++++G N
  KKY14872.1 430 AASATHSAIITSSA-LYTFGKN 450
                 56677888888875.8999988 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.11
      RCC1_2   1 VksvsaGdyHscaLtedGeVl 21 
                 +++v +G++  caL++ GeV+
  KKY14872.1 541 ITKVTSGGNTICALSAFGEVF 561
                 67899*********9988887 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1      0.02        45      23      44 ..      69      89 ..      67     103 .. 0.86
   2 !   24.5   0.0   1.3e-08     3e-05       4      52 ..      83     135 ..      82     137 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.02
       Ank_4 23 kgadinaqdnrsGetalhiAak 44
                ++adin   ++ G t lh+Aa 
  KKY14872.1 69 TRADINSK-DSHGCTILHHAAT 89
                589****9.888********95 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 1.3e-08
       Ank_4   4 aLhyaai...sgrlelvrlLlek.gadinaqdnrsGetalhiAakrgnveilk 52 
                 +Lh+aa    +  +  v+ L++   +d++ qd +sG+t+lh+A+++gn+++++
  KKY14872.1  83 ILHHAATsvdEDAYAFVQALVDVpYIDLYVQDLESGWTPLHRALYFGNISAAQ 135
                 6777777444444444888885433899***88*****************998 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0     2e-08   4.5e-05      19      72 ..      70     137 ..      58     146 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2e-08
       Ank_2  19 gadpn.k..ngktaLhyAakngnlei...vklLleh.......ad.ndgrtpLhyAarsghleivklL 72 
                  ad+n k   g t+Lh+Aa + ++++   v++L++        +d ++g+tpLh A  +g++ +++  
  KKY14872.1  70 RADINsKdsHGCTILHHAATSVDEDAyafVQALVDVpyidlyvQDlESGWTPLHRALYFGNISAAQAI 137
                 4677763469********998766655669****94445666666999*********99*99888754 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0015       3.3       1      30 [.      79     111 ..      79     112 .. 0.87
   2 !    8.5   0.0    0.0016       3.6       2      21 ..     118     137 ..     117     142 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0015
       Ank_3   1 nGetpLhlAarsgnlei...vkfLlenkgadvn 30 
                 +G+t+Lh+Aa s + +    v++L++ + +d++
  KKY14872.1  79 HGCTILHHAATSVDEDAyafVQALVDVPYIDLY 111
                 79*************84466******9999987 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0016
       Ank_3   2 GetpLhlAarsgnleivkfL 21 
                 G+tpLh+A+ +gn++ ++++
  KKY14872.1 118 GWTPLHRALYFGNISAAQAI 137
                 9************9876665 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.019        43       7      24 ..      71      88 ..      63      92 .. 0.73
   2 ?    5.5   0.0    0.0099        22      10      45 ..     113     143 ..     108     150 .. 0.80
   3 ?   -3.4   0.0       6.3   1.4e+04      39      55 ..     158     174 ..     154     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.019
       Ank_5  7 advnrldgggntpLhvAa 24
                ad+n +d +g t+Lh+Aa
  KKY14872.1 71 ADINSKDSHGCTILHHAA 88
                566777777777777776 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0099
       Ank_5  10 nrldgggntpLhvAakygaadvvrlLlargadlnlt 45 
                 ++l+ g+ tpLh A + g+ + ++ ++     ++++
  KKY14872.1 113 QDLESGW-TPLHRALYFGNISAAQAIM----LRDVR 143
                 5666777.**************99988....55555 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 6.3
       Ank_5  39 gadlnltdsrGltaldl 55 
                 g  ++++d +G++++++
  KKY14872.1 158 GGLIKIKDHEGNSPFEV 174
                 778999*******9985 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.074   1.7e+02       1      11 [.      79      92 ..      79     113 .. 0.74
   2 ?    7.4   0.0    0.0029       6.6       2      18 ..     118     134 ..     117     148 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.074
                TSBBHHHHHH...H CS
         Ank  1 dGnTPLHlAa...t 11
                +G+T LH Aa    
  KKY14872.1 79 HGCTILHHAAtsvD 92
                69*******95441 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0029
                 SBBHHHHHHHHTTHHHH CS
         Ank   2 GnTPLHlAatngkkrii 18 
                 G+TPLH+A ++g+ + +
  KKY14872.1 118 GWTPLHRALYFGNISAA 134
                 9******9988874444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.52
# Mc/sec: 9121.10
//
Query:       KKY14873.1  [L=312]
Description: putative mandelate racemase muconate lactonizing enzyme family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-56  191.8   0.0    1.6e-56  191.3   0.0    1.1  1  MR_MLE_C  Enolase C-terminal domain-like


Domain annotation for each model (and alignments):
>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.3   0.0     9e-61   1.6e-56       4     219 ..      67     282 ..      64     283 .. 0.87

  Alignments for each domain:
  == domain 1  score: 191.3 bits;  conditional E-value: 9e-61
                 HHHHHHHHHHT-SEEEEETSSSHHHHHHHHHHHHHHHHTTTSTSEEEEE-TTTSBHHHHHHHHHHHGGGTESEEESSSSTTTHHHHHHHHHH..HH.SS CS
    MR_MLE_C   4 eearelvaeqgfravKlkvggddvaedvervravreavgpgddvdlmvDanqawdlatAirvareleeldllwlEEPvppeddleglaelra..ra.si 99 
                   ++e+va+ gf+++Klkvg++ +++d +r+r +r+a+g ++   lmvDanq w++++Ai ++++l e++++++EEP++p dd+ g++++r+  +  +i
  KKY14873.1  67 SLLQESVAA-GFKHFKLKVGSN-LEDDKRRLRIARDAIGYDKGNVLMVDANQVWSVPEAIGYMKALSEFKPWFIEEPTSP-DDILGHKAIRDalAPyDI 162
                 566777776.********9997.*******************************************99************.78********9864489* PP

                 EEEESTTSSSHHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSCSSHHHHHHHHHHHHTTTTBEEEEEEGGGGH..TSGCSBSSS CS
    MR_MLE_C 100 piaagEslysradfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvapHsgsgglglaaslhlaaaipnllileyfldael..leeelleep 196
                  +a+gE++++r  f+++l+ag ++++qpd++rvgG++e+++++ la++f vp++pHsg  g+gl   ++ +++i+ + i       e+  + +e++ +p
  KKY14873.1 163 GVATGEMCQNRVMFKQFLQAGSLTVLQPDACRVGGLNEVLAILLLAAKFKVPIVPHSG--GVGLPEYTQHLSTIDYVVISGKKSVLEYvdHLHEHFLHP 259
                 *********************************************************5..455544444444444444444444443444789****** PP

                 SEEETTEEECTSSSBTSSEB-HH CS
    MR_MLE_C 197 levedGrvtvpdgpGlGveldee 219
                   v+dG+v +p++ G++ve+++e
  KKY14873.1 260 ASVKDGMVVTPKEAGYSVEMKPE 282
                 ********************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2279.90
//
Query:       KKY14874.1  [L=484]
Description: putative arf gtpase-activating protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-34  117.0   0.3    8.5e-34  116.1   0.3    1.4  1  ArfGap    Putative GTPase activating protein for Arf


Domain annotation for each model (and alignments):
>> ArfGap  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.3   4.8e-38   8.5e-34       2     114 ..      10     121 ..       9     124 .. 0.95

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 4.8e-38
                 HHHHHHCCSCCCCB-TTT-SBS--EEETTTTEEE-HHHHHHHCCS.TTT--EEETTTS---HHHHHHHHHTCHHHHHHHHTTTC-TTTSG-TTCGHHHH CS
      ArfGap   2 kalkellkepenkvCaDCgakeptWaslnlgvflCieCsgvHrslgvhiskvrsltldkwedeelellkalgNkkaneileaklpkeekrskssskekr 100
                 k++++l ++p+n++C+DCg+k+ptW s+ +gv+lC++Cs+ Hr+lgvhis+vrs++ld w+ ++l+++k +gN+ a ++++++  +     +++ k k+
  KKY14874.1  10 KIFEKLKTKPANRICFDCGQKNPTWSSVPFGVYLCLDCSSNHRNLGVHISFVRSTNLDVWRWDQLRIMKVGGNESATKFFQSNGGSAALA-SKDAKVKY 107
                 67999*******************************************************************************988888.99999*** PP

                 HHHHHHHHTCHTTC CS
      ArfGap 101 eefirakYeekkfa 114
                 ++ +++kY+e+  +
  KKY14874.1 108 TSNAATKYKEELKK 121
                 ********998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3209.89
//
Query:       KKY14875.1  [L=347]
Description: putative sterigmatocystin 8-o-methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-21   76.9   0.0    1.9e-21   76.3   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain
  ------ inclusion threshold ------
       0.07   13.8   0.0       0.13   13.0   0.0    1.4  1  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   2.2e-25   1.9e-21      65     209 ..     126     269 ..      62     270 .. 0.87

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 2.2e-25
                     EEEEET-TTSHHHHHHHHH-TT-E..EEEEE-HHHHHHHHHHS-----TTEEEEES-TTT.S-----SEEEEESSGGGS-HHHHHHHHHHHHHH- CS
  Methyltransf_2  65 slvDvGGGtGalakaivsayPtik..vivfDlpeVveaAkehlsageeervefvgGdffk.dslPeaDaillkrvlhDwsdekcvklLkrvkkal 156
                      lvDvGGG G  + +  ++yP i+  +i+ Dlp  +e+Ak++    +++++e ++ dff  +++  a a+ l ++lhDw  +kc+++L ++  al
      KKY14875.1 126 FLVDVGGGNGHDLMHFQKNYPDISgrLILQDLPGTIETAKDK----LTPGIEAMAHDFFTpQPIKGARAYYLHSILHDWPTQKCHEILSNLIPAL 216
                     59*******************996226889************....7899*********4355669***************************** PP

                     -TT-.EEEEEE----TTS---HHHHHHHHHHHHCSS-----HHHHHHHHHHCT- CS
  Methyltransf_2 157 pagG.kvivveavlgadpsgeletelvdlimlvqteGkeRteaeyeellseaGf 209
                      +g  k+++ e v++ +++   +t  +d +ml     +eR e+ ++el ++ G 
      KKY14875.1 217 TPGYsKILINENVIPDQGAYWENTG-LDWVMLTLYSSEERREKIWRELCEGVGL 269
                     9986156666666776666665555.5*********************999885 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.4e-05      0.13       2      96 ..     128     219 ..     127     219 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.4e-05
                      EEET-TTSHHHHHHHCTST..SSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG.BSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlg..kakvtgvDiseemleaareraeeeglnvefvqgdaed.lpfedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      +d+G G+G+++++++k+++  +++++  D+ ++ +e+a+ ++    + +e + +d+ +  p + ++  + +s+  lh ++ ++ +++l+++  +
       KKY14875.1 128 VDVGGGNGHDLMHFQKNYPdiSGRLILQDL-PGTIETAKDKL---TPGIEAMAHDFFTpQPIKGARAYYLHSI--LHDWPTQKCHEILSNLIPA 215
                      69****************55799******8.8999*******...589*******966255555555555554..88899999********999 PP

                      EEEE CS
  Methyltransf_25  93 Lkpg 96 
                      L+pg
       KKY14875.1 216 LTPG 219
                      9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 2124.27
//
Query:       KKY14876.1  [L=410]
Description: hypothetical protein UCRPC4_g06644 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.1e-111  371.8   9.2   3.1e-111  371.8   9.2    1.3  2  Glyco_hydro_71  Glycosyl hydrolase family 71


Domain annotation for each model (and alignments):
>> Glyco_hydro_71  Glycosyl hydrolase family 71
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  371.8   9.2  1.8e-115  3.1e-111      21     372 ..       3     371 ..       1     374 [. 0.95
   2 ?   -3.4   0.0      0.17   3.1e+03     142     153 ..     383     394 ..     376     405 .. 0.78

  Alignments for each domain:
  == domain 1  score: 371.8 bits;  conditional E-value: 1.8e-115
  Glyco_hydro_71  21 DiklAkaagiDgFaLNigskdswtaeqladayeaAeavg...fkLflSfDmavagawpksevislikkyashpaqlkvngkplvSTFeGeknaed 112
                     D++lA++agiD+F L i+  ds+ ++++a+a++aA+a++   +kL+l fD+++ gaw++++vis+i++y+ +  ++++ gkplvSTFeG++n+ d
      KKY14876.1   3 DLTLAQNAGIDAFGLDIAAGDSNVPNSVATAFAAAAAMSgrtIKLYLIFDYSAWGAWSADNVISYINTYSRSAVYFNYTGKPLVSTFEGTGNTGD 97 
                     99***********************************97799**********66***************************************** PP

  Glyco_hydro_71 113 wasiksalteeiffvPdfsslgaaaaaekaldvvDGlfsWeaWpkgatnmstetDeaylsalkgkpYmmpvSpwffthlgkesynknwvwrgddl 207
                     w+sik++ t ++ffvPd+sslga +aa+  ++++DGl sW+aWp+g++n +t++D+ y+++l++k+YmmpvSp f+t+l  ++y+knw+w +d+l
      KKY14876.1  98 WTSIKAS-T-NCFFVPDWSSLGAGTAAS--YSSIDGLASWNAWPEGPNNLTTSDDQYYQTSLGSKAYMMPVSPQFYTNL--PQYSKNWLWYSDSL 186
                     *******.5.9***********999999..6*******************************99***************..99************ PP

  Glyco_hydro_71 208 wakRweqvlelqpdfveiitWNDygEShYigplkekkaqdgsskyveg.mpHdgwrdllkyyiaayKtgsk.............kpaitedklvl 288
                     w+ Rw   l++ p+f++ii+WNDygEShYigp++ +   +    yv+  +pH++w+d+l+ yi+ayKtgs+             ++a  +d l++
      KKY14876.1 187 WHLRWLATLSVGPQFIQIISWNDYGESHYIGPIRPSGVVS-GAWYVDSaHPHTAWLDFLPLYISAYKTGSStvltssssssspsSAAAADDALTY 280
                     ***********************************76655.456665569*******************99************9999999***** PP

  Glyco_hydro_71 289 wyRphpkkakcssgdttgnpana.......elleDkvfvvallkspatvtvsvggkeset.fsvkaGvnklsvpfngetGkvkvsvvrngkt 372
                     wy+ +p +  +++ +t+ n+a +       +++ D++f+++ l +pat++vsvg+++ ++ + ++aG++++ +p+  +tGkv+++v+r+g +
      KKY14876.1 281 WYKSNPVSS-GDTASTVCNNAAYqttyppaTCAADNIFFTVNLVAPATISVSVGSSTLQSvYAASAGLSHFGIPTAAATGKVVFTVTRDGVS 371
                     ********9.989999988888889999999**************************98866888************************965 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.17
  Glyco_hydro_71 142 aldvvDGlfsWe 153
                     +++  DG+++W+
      KKY14876.1 383 SMSLTDGYVNWN 394
                     46889******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.34s 00:00:01.03 Elapsed: 00:00:00.57
# Mc/sec: 2168.31
//
Query:       KKY14877.1  [L=129]
Description: putativelike polyketide cyclase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-23   80.5   0.1    9.4e-23   80.4   0.1    1.0  1  SnoaL           SnoaL-like polyketide cyclase
    2.8e-09   37.5   0.0    3.5e-09   37.2   0.0    1.1  1  SnoaL_2         SnoaL-like domain
  ------ inclusion threshold ------
      0.022   14.9   0.1      0.036   14.2   0.1    1.3  1  HHV-5_US34A     Herpesvirus US34A protein family
      0.037   12.7   0.0       0.04   12.6   0.0    1.1  1  Ceramidase_alk  Neutral/alkaline non-lysosomal ceramidase, N-


Domain annotation for each model (and alignments):
>> SnoaL  SnoaL-like polyketide cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.1   2.1e-26   9.4e-23       3     125 ..       9     128 ..       7     129 .] 0.97

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 2.1e-26
                 HHHHHHHHHHTT-HHHHHGTEEEEEEETCCTTTCECHHHHHHHHHHHHHHHCTTCEEEEEEEEEETTEEEEEEEE.EEEESSEBTTBE-TT-EEEEEEE CS
       SnoaL   3 vlrfyeevwnsgdldaldelvaedvvdhnpeeeparGlegfrafveelfkafPDlkvevedlvaegdkvaarltf.tGthtgeflGipptGkkvkfeei 100
                  +r+y + +n+ + ++l+++va+ v ++    +++  +e++ +fv+ +fk f+ + ++ e +va +d+va+r++f +++ ++e++G +ptG+ +++ e+
  KKY14877.1   9 HYRRYLTYLNTNRARELQDFVADTVTHN----GKTLTREQYQDFVAGNFKCFSTIDIAPELIVANDDQVACRIKFsNCKLEKELFGCQPTGRVFDMVEH 103
                 689*************************....9*****************************************956********************** PP

                 EEEEEETTEEEEEEEEECHHHHHHH CS
       SnoaL 101 tllrvedGkIveewdviDllgllrQ 125
                 +++r+++GkIve+ +++D+++l  Q
  KKY14877.1 104 VFYRFQEGKIVEVQSLVDEIALREQ 128
                 **********************998 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   7.7e-13   3.5e-09       2     102 .]      11     116 ..      10     116 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 7.7e-13
                 HHHHHHHHTTCHHHHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEETTEEEEEEEEEEE........EETTSSEEEEEEEEEE CS
     SnoaL_2   2 raflaalnagdldalaalfapdvvwedpggelrGreairaffralfaafpdlrfeihdvvadgdrvavewtvtgt........ipatgrgvtvrgvdvf 92 
                 r++l  ln+ ++ +l +++a+ v++ + +     re++++f+++ f+ f+++++  + +va++d+va ++ ++            +tgr +++  + ++
  KKY14877.1  11 RRYLTYLNTNRARELQDFVADTVTHNGKT---LTREQYQDFVAGNFKCFSTIDIAPELIVANDDQVACRIKFSNCklekelfgCQPTGRVFDMVEHVFY 106
                 89**********************99884...479**********************************999877999********************* PP

                 EEETTEEEEE CS
     SnoaL_2  93 rvrdGkiveh 102
                 r+++Gkive+
  KKY14877.1 107 RFQEGKIVEV 116
                 ********95 PP

>> HHV-5_US34A  Herpesvirus US34A protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1     8e-06     0.036      40      63 ..       5      28 ..       2      29 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8e-06
  HHV-5_US34A 40 erdahlrryeerlqknrarrrqsf 63
                 e +ah rry   l+ nrar  q f
   KKY14877.1  5 ELEAHYRRYLTYLNTNRARELQDF 28
                 779*****************9988 PP

>> Ceramidase_alk  Neutral/alkaline non-lysosomal ceramidase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   8.9e-06      0.04     235     296 ..      42     104 ..      16     122 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.9e-06
                     ....TT-EEE.EE-SS-TTEES-SS.......................SSS..TSSSTS-HHHHH CS
  Ceramidase_alk 235 ksgkekfvaa.faqsnvGDvspnvlGalCedsgeeCdlekstCeg..ksekcagrgpgkdefest 296
                     +++ ++fva+ f   ++ D++p +  a  +d++  C+++ s C+   +   c+ +g  +d++e +
      KKY14877.1  42 REQYQDFVAGnFKCFSTIDIAPELIVA--NDDQVACRIKFSNCKLekELFGCQPTGRVFDMVEHV 104
                     257899**9768888999******755..599***********9523666899999999*99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 894.92
//
Query:       KKY14878.1  [L=240]
Description: hypothetical protein UCRPC4_g06601 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-06   28.2   0.0    2.1e-06   27.4   0.0    1.4  1  Lactamase_B_2  Beta-lactamase superfamily domain
     0.0016   18.4   0.2     0.0031   17.4   0.2    1.7  1  Lactamase_B_3  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   2.3e-10   2.1e-06      42     201 .]      12     199 ..       9     199 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 2.3e-10
                    HHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHTT....TTEEEEEE-TTSEEEE.CSTTEEEEEEEE-EE--C......TCCE-TT... CS
  Lactamase_B_2  42 DHlaglltlrelrpkklplyapkgvlavleanfvylaleee....pavnvheldwgesfel.gdggleitatparhksgr......rldrnag... 123
                    DH+ +  t+ e   ++lp++ +++  ++l+ ++   ++++     ++++++   +g +++    +++++t tp +h +        +         
     KKY14878.1  12 DHF-D-QTVEESLRRDLPIITTPHAKEHLTGKGAESFTQVFdldfFQEMIVN--IGSQTREsRRPQIKVTGTPGKHVGDGvigtanD-----Ylqa 98 
                    666.3.56666444469***************98888887788544444444..4444444445689*********99987665332.....1344 PP

                    ..TSEEEEEE.....CTTEE.............EEEESS-S---..HHHHHHHCT..-SEEEEE-S-SSTTHHHH..HHT---STSHHHHCTTSSS CS
  Lactamase_B_2 124 ..dtlGlrie.....gggkr.............vyyigDtgyip..eeigerlgg..adllllditayeddemir..hmgHltpeeaveaaadlga 193
                      +t G+++e     g   +             +y +gDt  ++  ++i e+ +g  +dl+l+  + ++  +++    m++++ ++ +e+++ +++
     KKY14878.1  99 vpPTNGWLVElgynsG---SgepdaeafgcgyrIYISGDTLMVDdlKSIPEHCKGknVDLMLIHLGGTTIPSPSLplLMVTMDAKQGIELVKLIKP 191
                    669*******876441...14567778888888***********8888999999999*******9999998877799******************* PP

                    SEEEEESB CS
  Lactamase_B_2 194 krlvliHi 201
                      +++iH+
     KKY14878.1 192 DLTIPIHY 199
                    *******7 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.2   3.5e-07    0.0031     105     163 .]     126     198 ..       9     198 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.5e-07
  Lactamase_B_3 105 gltiyhlGhlahe...lsseelkelgrvDvvltPvgg...........pltlgqeealelakrLkpklvlPmh 163
                    g++iy  G++       s +e+ + ++vD++l+  gg            +t+++++ +el+k++kp+l +P+h
     KKY14878.1 126 GYRIYISGDTLMVddlKSIPEHCKGKNVDLMLIHLGGttipspslpllMVTMDAKQGIELVKLIKPDLTIPIH 198
                    55555555554431113467777889*******************99999**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.47
# Mc/sec: 1539.48
//
Query:       KKY14879.1  [L=582]
Description: putative pyridine nucleotide-disulfide oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-39  134.0   0.0    1.5e-34  119.6   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    2.1e-10   41.0   0.0    8.8e-09   35.8   0.0    2.7  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0005   20.2   0.0       0.65   10.3   0.0    3.1  3  NAD_binding_8  NAD(P)-binding Rossmann-like domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   0.0   2.5e-38   1.5e-34       2     250 ..      64     376 ..      63     393 .. 0.91
   2 !   12.4   0.0   1.2e-05     0.069     267     294 .]     455     484 ..     430     484 .. 0.89

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 2.5e-38
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC....... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeiasevvkklnqgielllgeevvkidpgkkkvklekkke....... 92 
                  ++v++G+G+AG+ ++++la+++++ +++ + +  + +++ll +a +g+ e+++i++  v+  ++g+el+ g  + +id++kk++++e+          
   KKY14879.1  64 RIVILGSGWAGYVFSRDLAHKKFQPLVI-SPRSYFVFTPLLNEATVGTTEFQSIVEP-VRDHRKGVELFQG-WADAIDFEKKTIQVEEAIFdptvtka 158
                  79**************************.888899999**************98883.4566889999999.99999*999999996554389999** PP

                  .............TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T..................SEEEEES-SHHHHHHHH CS
                  .............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  93 .............gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp..................krivvvGgGyiGvElAa 159
                               g+++++ ydklv+A Gs + ++g++Gv+e++ +l + + + +++++  l+                   ++++vGgG++G+E+Aa
   KKY14879.1 159 mvaggkgpttrtkGQTFDLPYDKLVIAVGSYAQTFGTKGVNEHAMFL-KDVGDGRKIRKRILElfevcglptfdddlrkclLHFAIVGGGPTGMEFAA 255
                  ************9********************************99.*****************************9999999************** PP

                  HHHHHT-..............EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE.................EEEEEETTSCEE CS
                  xxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxx RF
  Pyr_redox_2 160 alaklgk..............evtlveardrllraldkelsaaleealekeGvevklgtsvkeidgnge.................klevvledgeei 226
                  +l++l                ++t+ + ++++l+++d++l+ ++++++ ++ +e+k+ + v e+++                     ++ ++++  e+
   KKY14879.1 256 ELRDLINqdlaklypqlmkfvRITVFDVAPKVLPMFDESLASYAMQQFGRQRIEIKTSHHVLELRRGLPtgmptqhglppeerkggAYTITTKEDGEM 353
                  **888555888899999*9999****************************************99966557889999999998888777788888889* PP

                  EESEEEE-S-EEES-HHCSHCCT- CS
                  xxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 227 dadlvvvavGvrpstelleeklgl 250
                     l+v+++G  p++ l  ++ g 
   KKY14879.1 354 GIGLCVWSTGNAPNPLLE-KAFGQ 376
                  **************9775.55554 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 1.2e-05
                  SSTTEEE-GGGC..TECCSS--HHHHHHHH CS
                  xxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
  Pyr_redox_2 267 nvpgiyaiGDva..ggkggpelaqaAvqqG 294
                   + ++yaiGD+a  +  + p++aq+A q++
   KKY14879.1 455 IMRDVYAIGDCAtlDSVQLPATAQVANQEA 484
                  5789**********99**********9987 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.05     3e+02       1      35 [.      64      98 ..      64     111 .. 0.80
   2 !   35.8   0.0   1.5e-12   8.8e-09       1      67 [.     240     320 ..     240     326 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.05
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkll 35
                ++v++G+G+ g  +   la+ + +  v+  ++ + 
  KKY14879.1 64 RIVILGSGWAGYVFSRDLAHKKFQPLVISPRSYFV 98
                79*********999999998888877777777666 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 1.5e-12
                 EEEEECSSHHHHHHHHHHHHTT..............SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelg..............kkVtvversdkllrllDeeaskilqeklekngievllntkveeie 67 
                 + ++vGgG +g+E+A++l++l                ++tv++ ++k+l+++De ++++ ++++ ++ ie+ +++ v e++
  KKY14879.1 240 HFAIVGGGPTGMEFAAELRDLInqdlaklypqlmkfVRITVFDVAPKVLPMFDESLASYAMQQFGRQRIEIKTSHHVLELR 320
                 679***************6644466668889998888***************************************99986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0     0.002        12       1      28 [.      67      94 ..      67      97 .. 0.89
   2 ?   -1.8   0.0      0.62   3.7e+03      31      48 ..     161     178 ..     157     191 .. 0.86
   3 !   10.3   0.0   0.00011      0.65       1      28 [.     243     284 ..     243     287 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.002
                   EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekr 28
                   I+G+G +G v+ + La ++f+ l++  r
     KKY14879.1 67 ILGSGWAGYVFSRDLAHKKFQPLVISPR 94
                   89******************99998665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.62
                    SSGGG-EECETTCEECTS CS
  NAD_binding_8  31 lGGraasyevpgvrvdyg 48 
                     GG+  + + +g+++d++
     KKY14879.1 161 AGGKGPTTRTKGQTFDLP 178
                    79999*******999987 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00011
                    EE--SHHHHHHHHHHH........C.C....TE.EEEEE-SS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLa........k.a....gf.dvlllekr 28 
                    IvG+G +G+ +A++L+        k +    +f ++++++ +
     KKY14879.1 243 IVGGGPTGMEFAAELRdlinqdlaKlYpqlmKFvRITVFDVA 284
                    9***************44444333131223444577777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3927.38
//
Query:       KKY14880.1  [L=404]
Description: putative mfs glucose [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-61  207.7  26.1    1.4e-32  113.2  10.5    4.0  4  Sugar_tr  Sugar (and other) transporter
    7.6e-11   41.5  25.6    1.2e-09   37.6  10.7    2.4  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.2  10.5   1.6e-36   1.4e-32       2     163 ..      12     163 ..      11     182 .. 0.91
   2 !   79.9   0.4   1.9e-26   1.7e-22     223     334 ..     183     293 ..     180     298 .. 0.89
   3 !   17.3   0.3   1.9e-07    0.0017     368     401 ..     299     332 ..     295     336 .. 0.92
   4 !   11.1   0.2   1.4e-05      0.13     422     452 .]     328     358 ..     328     358 .. 0.96

  Alignments for each domain:
  == domain 1  score: 113.2 bits;  conditional E-value: 1.6e-36
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTS CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkn 100
                 + +a+l+g lfg+d+  ++++l   ++++ f++ + +  +     ++g i++++ +G+++G+l +++++d+++R  ++ ++++l +ig +l+ a++   
  KKY14880.1  12 CGFATLRGGLFGFDISSMSGVLGTDAYVNYFKVGSGQ--Y-----RQGGITCAMPFGSLVGALASSFIADKYSRVTAIQFSSILWIIGPILMTASN--- 100
                 667999********************77777766544..4.....369************************************************... PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnk 163
                  + +l+vgRv++G++vG+as++vP+y+sE+Apk++Rg++vsl+q+ait+G l+ +++ +g + 
  KKY14880.1 101 GISLLCVGRVIAGLCVGIASAMVPVYQSEVAPKEIRGRVVSLQQWAITWGNLIQYFIQYGASW 163
                 9*********************************************************99765 PP

  == domain 2  score: 79.9 bits;  conditional E-value: 1.9e-26
                 HHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHH CS
    Sugar_tr 223 elaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnfvatfvaiflvdrfGRRtlll 321
                 e++e+ d+++ e+e+   s+k l +   +++r+++g+ lqi+ ql+G+n++myy   i++++g   +ll+  i +v+n++ t+ ai++ d++GRR+ ll
  KKY14880.1 183 EFKEIEDTIRFEREQAVSSYKALTEP-RMFKRVFLGISLQIWSQLCGMNVMMYYIVDIMQSTGTGSPLLTASIQYVLNTALTLPAILFLDKVGRRPALL 280
                 68899999999977654444444443.69********************************************************************** PP

                 HHHHHHHHHHHHH CS
    Sugar_tr 322 lGaagmaicfvil 334
                 +G++++a+++ i 
  KKY14880.1 281 FGFFFQAVFLYIE 293
                 *******998775 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 1.9e-07
                 THHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 368 gpvpwvlvsElfpqsvRskalaiavavnwlanfl 401
                 gp+ w + +E++p ++R+ka  +++a+nw+a f 
  KKY14880.1 299 GPTSWTYPAEIYPAKIRAKAVFLSTASNWFAAFN 332
                 899***************************9985 PP

  == domain 4  score: 11.1 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 422 faglavlfiifvfffvpetkgrtleeieelf 452
                 fa+++ +++i +f++ petkg tlee++ +f
  KKY14880.1 328 FAAFNTAAFIHMFLTAPETKGFTLEEMDDVF 358
                 8999***********************9987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6  10.7   1.4e-13   1.2e-09      22     137 ..      37     154 ..      15     164 .. 0.80
   2 !    9.6   6.9   4.2e-05      0.38      22      78 ..     235     292 ..     214     349 .. 0.74

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 1.4e-13
       MFS_1  22 alaedlgispse..igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlgagalfpagaaliadwfpke 117
                 a+ + + +   +  +g ++ +  +g++v++l  ++++d+++r   + ++ +l+++g +l+ + ++++ ll+v+rv++Gl+ g++ +++ ++ ++++pke
  KKY14880.1  37 AYVNYFKVGSGQyrQGGITCAMPFGSLVGALASSFIADKYSRVTAIQFSSILWIIGpILMTA-SNGISLLCVGRVIAGLCVGIASAMVPVYQSEVAPKE 134
                 5555555444443333355567789***************9999************444444.58899******************************* PP

       MFS_1 118 ergraigllsagfslGailg 137
                  rgr+++l + ++  G ++ 
  KKY14880.1 135 IRGRVVSLQQWAITWGNLIQ 154
                 **************999875 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 4.2e-05
       MFS_1  22 alaedlgispseigl.lltlyalgaavaslplGrlsdrfGrrrvlllglllfalglll 78 
                 ++ +  +++++   l  +++ +++  +++lp+  + d++Grr+ ll+g+++ a++l++
  KKY14880.1 235 YIVDIMQSTGTGSPLlTASIQYVLNTALTLPAILFLDKVGRRPALLFGFFFQAVFLYI 292
                 333333333344444245669999******************************9443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 2470.76
//
Query:       KKY14881.1  [L=197]
Description: hypothetical protein UCRPC4_g06604 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1272.41
//
Query:       KKY14882.1  [L=323]
Description: putative capsule polysaccharide biosynthesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-06   28.7   0.0    4.3e-06   27.2   0.0    1.7  2  4HBT_2    Thioesterase-like superfamily


Domain annotation for each model (and alignments):
>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   2.4e-10   4.3e-06      11      92 ..       2      92 ..       1     143 [. 0.75
   2 ?   -1.7   0.0      0.21   3.8e+03      67      82 ..     252     267 ..     239     283 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 2.4e-10
      4HBT_2 11 hlnnarylryleearvkfle..........rtglksrsiarr.......giglilssahvryrrplkfpdrltvefrvididaktliiehrflsnadgk 92
                h  n++y+  ++ ar +++           r g+ s     +        +g+ l++  + +r++lk+++++  ++rv  +d+k+++i  +f++  +g 
  KKY14882.1  2 HKSNSTYFTDVDVARTHLICtlfargienvRGGT-S-----SlvhgkpsNFGVALGAVSCSFRKELKPFEKYDLHTRVLTWDQKWIYIVTYFVK--KGA 92
                5568888888888888888766655555554444.2.....0333335689******************************************9..443 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.21
      4HBT_2  67 vefrvididaktliie 82 
                 +++++++++++++ +e
  KKY14882.1 252 TQSQLSKWTRSRIEME 267
                 5789999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2180.86
//
Query:       KKY14883.1  [L=313]
Description: putative fatty acid elongase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-42  144.0  11.1    1.2e-22   80.7   0.2    2.1  2  ELO       GNS1/SUR4 family


Domain annotation for each model (and alignments):
>> ELO  GNS1/SUR4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.2   6.5e-27   1.2e-22       3     118 ..      64     173 ..      62     174 .. 0.89
   2 !   66.8   6.2   1.1e-22     2e-18     155     247 ..     174     268 ..     173     270 .. 0.92

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 6.5e-27
         ELO   3 lsspkvpiliallYlllvllgpklmknrkpfklkalvilhnlflavlSavgfvgmvkallevlkkkglvdllckddssdegrlrngllaflvllfylsK 101
                 +s+ + + ++++lY+++++ g++lm+nr+++kl++++i+hn++l+++S +++++++++l   l ++gl+d +c       g+ ++++l++l++l yl+K
  KKY14883.1  64 MSTLRETATALVLYYTVIFGGRELMRNRPAYKLNSIFIVHNFYLTAISGLLLAAFIQQLAPGLWRNGLYDGIC------GGTGWTQPLVVLYYLNYLTK 156
                 677788999***********************************************9999888889*******......56666666666666666*** PP

         ELO 102 fvEllDTvflvlrkkqv 118
                 ++EllDTvflvl+kk++
  KKY14883.1 157 YLELLDTVFLVLKKKPL 173
                 ***************87 PP

  == domain 2  score: 66.8 bits;  conditional E-value: 1.1e-22
         ELO 155 vHaimYtYYflsalgakklvvpwkrliTslQilQfvvgllaavyllvsytlkk........vgCdtsqtpkaairlnllyllslllLFlnffiksylkk 245
                 +H++mY+YY+++a g++   ++wk++iT lQi Qf++ l +++++ + y++++        ++C+ +   ++a++ ++ +l s+l+LF+ f++++y k+
  KKY14883.1 174 MHVVMYYYYAQAARGIR---IWWKKYITLLQISQFILDLGFVYFASWDYFTSVyapslphvGTCAGE---EFAAFSGCAILSSYLVLFILFYFSTYKKS 266
                 8***********77666...7******************99999999988888999****999*777...88************************998 PP

         ELO 246 kk 247
                  k
  KKY14883.1 267 PK 268
                 76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1929.63
//
Query:       KKY14884.1  [L=541]
Description: putative cytochrome p450 monooxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-78  263.4   0.2    5.6e-78  262.7   0.0    1.3  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.8   1.0      0.44   7.9e+03     277     286 ..      29      38 ..      27      39 .. 0.92
   2 !  262.7   0.0   3.1e-82   5.6e-78       6     458 ..      68     530 ..      63     535 .. 0.89

  Alignments for each domain:
  == domain 1  score: -4.8 bits;  conditional E-value: 0.44
                 HHHHHHHHHH CS
        p450 277 TtsstlswaL 286
                 Ttss+++wa+
  KKY14884.1  29 TTSSAMFWAF 38 
                 9*******98 PP

  == domain 2  score: 262.7 bits;  conditional E-value: 3.1e-82
                 EHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEET.TEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHH CS
        p450   6 plplvgnllqlgrkeelhevlrklqkkygpifrlklg.skpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrflt 103
                  +pl+g ++ +  ++e+    rk + ++g+i+r ++  + +   + + +a+k++ +++   ++++p++   +    + +g+gvl+a+g+++ ++R+ l 
  KKY14884.1  68 GFPLWGQFFDII-NNEVGVPQRKWHAEHGQIVRYFFPfGAERLSIAQDDAIKQITVRN---PYNYPKPLRAKLWMVRILGEGVLLAEGDTHVRQRKALA 162
                 7899*******9.59999999************87651699999**************...6777777777777799********************** PP

                 HHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCS....EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHH..HHHCHHHHCCCCCH CS
        p450 104 ptltsfgklsleelveeeaedlveklrkkagess....elditellskaaldvigsilFgarfdlledeklselvkaveelss..llskssvqllllfp 196
                 p +  + +++l++++ + a  l e ++++  + +    ++++ e+l++ +ld+igs  +g ++d+l+++++  l +a + ++   ++s  ++ l  ++p
  KKY14884.1 163 PGFSISSIRTLTPIFWQKALLLAELWKEEMVAEKvrskSFEVLEWLNRTTLDIIGSAGLGTEIDSLRNPDA-PLREAYRLVFAfdVMSRVFHGLAAFIP 260
                 ****99788******************998888888899******************************84.555555555444477777899****** PP

                 HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC.SCSSCSHHHHHHHHC.TTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH CS
        p450 197 llkylptkllrklkeavkklkdlldklieerretldsa.kksrrdfldalllak.kekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknP 293
                 + kylp k++r+++  ++++ + +  +i e+ e  +s+  ++ +d +++++++  k+  + ++ls ee + +v+++l+aG+dTt++ ++w+L+++ k+P
  KKY14884.1 261 VTKYLPAKMNRDMQMSRDIILNKAADIISEKTEFAKSSnGHKGKDIISLIIKDNlKATGE-NSLSFEESRDQVMTFLGAGHDTTATSVAWTLHLISKYP 358
                 ******************************999888876678999999999998655555.59************************************ PP

                 HHHHHHHHHHHHHCCTTT.........T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTS.SSTTS CS
        p450 294 evqeklreEidevlgdkr.........eptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevf.pnPee 382
                 evq+klr Ei+e+++             ++ +d  +lpyld+v+kEtLR++p++p+++ R+   + ++++y ip+Gt+v + ++ ++r p+++ p +++
  KKY14884.1 359 EVQAKLRAEIKEHMPFLFdedkrtkseYLDKADADRLPYLDNVCKETLRYIPAIPMTV-RQNVLPDKLGDYEIPAGTTVYILAQVINRMPDYWgPTADN 456
                 ************97532223456988889999***********************777.9999999********************************* PP

                 --GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSCSSEEESSS CS
        p450 383 FdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppileksglllppkp 458
                 Fdp+R+++        + af+ F  GpR CiG+++A++e+kl+l +lL+ +++e +p +d p + + + l+l+pk 
  KKY14884.1 457 FDPDRWENLPP--TYTQNAFMTFLQGPRGCIGRKFAEVEMKLLLCSLLSMYSFESDPSVDDPEQWKMWRLVLRPKD 530
                 ******99965..499***************************************999999999888866666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.51
# Mc/sec: 3222.59
//
Query:       KKY14885.1  [L=483]
Description: putative guanine deaminase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-56  191.9   0.0    2.3e-56  191.6   0.0    1.1  1  Amidohydro_1  Amidohydrolase family
    0.00036   20.1   0.1      0.023   14.2   0.0    2.1  2  Amidohydro_3  Amidohydrolase family
  ------ inclusion threshold ------
        0.1   11.9   0.1       0.16   11.2   0.1    1.2  1  DUF1611       Domain of unknown function (DUF1611_C) P-loop d


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.6   0.0   3.9e-60   2.3e-56       1     344 []      92     473 ..      92     473 .. 0.94

  Alignments for each domain:
  == domain 1  score: 191.6 bits;  conditional E-value: 3.9e-60
                   EEEE-EEEEEEECETTECSSS....GHHHHH...........STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTHHHHHHHHHHHTSSSEEEEEEE CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrga....tledwl...........vppetaaealesgiktalksGtttvadmgattstgiealleaaeelplglrilgg 82 
                   +++PGlID+H+H++q +++ +     l +w+            + + a +++   +++ l+ Gtttva+ +  + ++++ l+  ++++  g+r+++g
    KKY14885.1  92 FLFPGLIDTHLHAPQWPNLAIgmegNLREWVekytdpleasySDNHKADVVYDELVRKELSLGTTTVAYNSSPHWQATNILATKCKKY--GQRAVIG 186
                   689************************************************************************************9..******* PP

                   SSEGGS........GCCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHH.......HHHHHTTEEEEEETSSCHHHHHHHH CS
  Amidohydro_1  83 kvsldr........gsaetskasreklkagaaetikgkadgvvkvalapheapafsdeelkealk.......eakkrdlpvaiHaletkgevedaea 164
                   k+++ +        ++  ts+a  +k ++ +    ++++++ v++ + p++ p ++++++  +         + + + + v++H++et++++  ++a
    KKY14885.1 187 KLCILQnsthgnweKDVPTSLADEKKSVDFI--RSLDPSGKQVMPCIQPRGGPYVPPAGMLGLGAlsnspayLDSGKPIRVQAHMCETEEDICRMKA 281
                   ****999***999955566666666666665..55678899999**************999999888899755555678899999************ PP

                   HHTTTEEEETTTTSTCCHHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHHTSCEEEEEECTTSSCCGGHHHHH CS
  Amidohydro_1 165 afgetiehgthlevaeslglldeiklilahgvhltpteaellkerlkeagvahcpfsnsilrsgrealrkaldeGvkvglgtDgaasgnslnlleel 261
                    ++    +  ++e + s+gll + + ilah++hl+pt++ ll+    +agvah p sn  lr+g++++r++ld++vkvglgtD +++g s ++l+ +
    KKY14885.1 282 VHP---GFSNYTEMYRSYGLLHS-RSILAHCIHLSPTDISLLAST--RAGVAHNPNSNTCLRDGWCRVRDLLDANVKVGLGTD-CSAGYSTSILDAM 371
                   ***...*****************.*********************..************************************.************* PP

                   HHHHHHHHHCCTT..TTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECC....CT.............CGGGTTTCTSEEEEEEEE CS
  Amidohydro_1 262 rlalklqrgllye..deegglslkealrmaTingAkalglddkvGsievGkdADlvvvdl....di.............laafvglkkdgnvkkviv 339
                   r a  ++r+l +   ++ ++l+ +e++ + T+++A++l ++d vG +evGk++D+ +vd+    d+              +++v+l +d++ +kv+v
    KKY14885.1 372 RSASNVSRHLVMAtgESSYMLKFSEIVFLGTLGAAQVLDVEDMVGNFEVGKQFDALLVDTgleeDLinvrgwegdaealVKKWVFLGDDRSLRKVWV 468
                   ************99*99*******************************************876522799999999********************** PP

                   TTEEE CS
  Amidohydro_1 340 kGklv 344
                   +G+lv
    KKY14885.1 469 GGRLV 473
                   **997 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.0    0.0049        29       9      20 ..      92     103 ..      91     131 .. 0.87
   2 !   14.2   0.0   3.8e-06     0.023     358     472 ..     341     473 ..     303     474 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0049
  Amidohydro_3   9 lvlPGFvDsHtH 20 
                   +++PG++D H+H
    KKY14885.1  92 FLFPGLIDTHLH 103
                   589********* PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.8e-06
  Amidohydro_3 358 tpvkellnagvkvalgsDapvgpfdpwprigaavmrktrrgg.evlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvld....adp 449
                    +v+ ll+a+vkv lg+D+  g  +++   ++      r+   +    +  l + e++ l T g+A++l  ed  G+ evG++ D  + d     d+
    KKY14885.1 341 CRVRDLLDANVKVGLGTDCSAGYSTSILDAMRSASNVSRHLVmATGESSYMLKFSEIVFLGTLGAAQVLDVEDMVGNFEVGKQFDALLVDtgleEDL 437
                   689***************999998888888888866665443344444455789*******************99********99999997777444 PP

  Amidohydro_3 450 ldvdp.pelaear............vrltvvdGrvv 472
                   + v   + +aea+             r+++v+Gr v
    KKY14885.1 438 INVRGwEGDAEALvkkwvflgddrsLRKVWVGGRLV 473
                   444320222222266778888888889999999887 PP

>> DUF1611  Domain of unknown function (DUF1611_C) P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   2.6e-05      0.16      17      93 ..     354     429 ..     342     432 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.6e-05
     DUF1611  17 vvGTdcavGKrttaleleealeerGlkaafvaTgqtgili.agegvvldavvvdfvaGaveglvkkaaeeeepdlilv 93 
                  +GTdc++G  t  l   + + +   +  ++aTg+ + +    e v l+ + + +v   ve++v +++  ++ d++lv
  KKY14885.1 354 GLGTDCSAGYSTSILDAMRSASNV-SRHLVMATGESSYMLkFSEIVFLGTLGAAQVL-DVEDMVGNFEVGKQFDALLV 429
                 58*******999999999888888.788899*********99******999999886.68888888887777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 2885.54
//
Query:       KKY14886.1  [L=582]
Description: putative eukaryotic translation initiation factor subunit eif2b [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-05   23.0   6.5      0.018   14.7   1.0    4.0  5  Hexapep       Bacterial transferase hexapeptide (six repeats)
    0.00017   20.7   0.1    0.00028   20.0   0.1    1.3  1  Fucokinase    L-fucokinase
    0.00065   20.1   0.0     0.0013   19.1   0.0    1.5  1  NTP_transf_3  MobA-like NTP transferase domain
     0.0057   14.8   0.2      0.008   14.4   0.2    1.1  1  DUF4954       Domain of unknown function (DUF4954)
  ------ inclusion threshold ------
        3.6    7.4   5.3         52    3.7   3.0    3.2  2  Hexapep_2     Hexapeptide repeat of succinyl-transferase


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.62   2.2e+03      22      34 ..     446     458 ..     445     460 .. 0.44
   2 !    7.5   0.2   0.00097       3.5       2      35 ..     463     495 ..     461     496 .. 0.63
   3 !    8.8   0.2   0.00039       1.4       3      35 ..     481     512 ..     479     513 .. 0.82
   4 !   14.7   1.0   5.1e-06     0.018       2      32 ..     497     526 ..     496     531 .. 0.84
   5 !    9.3   0.2   0.00027      0.96       1      19 [.     513     530 ..     513     536 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.62
                 E-TTEEEETTEEE CS
     Hexapep  22 IGdnvkIgagvvi 34 
                 I++ ++I+a ++i
  KKY14886.1 446 IHPTATIAARTTI 458
                 3344445554444 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00097
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 t IG n+ +   +vi    ++G  + Ig g++++
  KKY14886.1 463 TLIGANASVAEKCVI-KESIVGHSASIGQGSRLT 495
                 556777777777777.555577777777777665 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00039
                 EEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   3 vIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 ++G  + Ig ++ +   ++I d+++Ig+ + ++
  KKY14886.1 481 IVGHSASIGQGSRL-TRCIIMDGAVIGEKCMLT 512
                 68888999999999.999999999999988776 PP

  == domain 4  score: 14.7 bits;  conditional E-value: 5.1e-06
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagv 32 
                 ++I ++++Ig  +++  n++IG+ ++Ig+g+
  KKY14886.1 497 CIIMDGAVIGEKCML-TNTVIGKKAVIGPGC 526
                 789999999998888.888899999998886 PP

  == domain 5  score: 9.3 bits;  conditional E-value: 0.00027
                 TEEEETTEEE-TTEEEETT CS
     Hexapep   1 stvIGsnvlIgpfaviggn 19 
                 +tvIG++++Igp++ +  +
  KKY14886.1 513 NTVIGKKAVIGPGCDL-RD 530
                 6899999999999887.44 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   7.7e-08   0.00028     234     321 ..     434     525 ..     432     572 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 7.7e-08
  Fucokinase 234 gttaeylehltkdaslkeel.sltstafsaiknkkekkkesavvinSvlessvsvgegsviehsslkgnvsigsnsivsglelessee...s 321
                 gtt++ l+h +k  + ++   + t + ++    ++ + +e++v+ +S++ +s+s+g+gs +  + + ++  ig+++++ +  + +++     
  KKY14886.1 434 GTTSSALSHPQKIHPTATIAaRTTISNTDTLIGANASVAEKCVIKESIVGHSASIGQGSRLTRCIIMDGAVIGEKCMLTNTVIGKKAVigpG 525
                 66777777743333333332322222222222344455999**************************************9999987545552 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   3.6e-07    0.0013      15      80 ..      35      98 ..      14     149 .. 0.64

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.6e-07
                  THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSHCHHHH...HHTTCTS-EEE-TTSS-SHHHHHHHHH CS
  NTP_transf_3 15 dKallplggkpllervldalraagvdevvvvggdeevla...alarlgvrvvededpgkgplaslaaal 80
                  +Kal+ ++++p++++vld   + gv ++++v+++e+  a   al + +  +++       p+a+++a +
    KKY14886.1 35 PKALISIANRPMVWYVLDWCYRTGVTDITLVTPPESEPAlsaALSQNP--YLTS---LPSPSATILAPA 98
                  9********************************975443111222222..1111...124444444444 PP

>> DUF4954  Domain of unknown function (DUF4954)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   2.2e-06     0.008     170     263 ..     440     531 ..     423     537 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.2e-06
     DUF4954 170 ksevGeigekvkilnaglikNv..kigdyatiegasklengtinSskeapveiGegViledfiissGskikdgavisrcfvGqavklkkqfsaeds 263
                  s+  +i  +++i   ++i N+   ig+ a++     +++        +  +iG+g  l+ +ii+ G+ i +  +++++++G+   ++ +  + d+
  KKY14886.1 440 LSHPQKIHPTATIAARTTISNTdtLIGANASVAEKCVIKES----IVGHSASIGQGSRLTRCIIMDGAVIGEKCMLTNTVIGKKAVIGPGCDLRDC 531
                 55555677777777777777752246777777666666653....334556788888888888888888888888888888888777766666554 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.06   2.2e+02       7      15 ..     462     470 ..     461     477 .. 0.85
   2 ?    3.7   3.0     0.015        52       6      30 ..     501     526 ..     481     529 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.06
                 T-EE-TT-E CS
   Hexapep_2   7 nCliGanag 15 
                 ++liGana 
  KKY14886.1 462 DTLIGANAS 470
                 789****86 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.015
                 TT-EE-TT-E.ESEEE-TT-EE-TT- CS
   Hexapep_2   6 dnCliGanag.iGvslGdncvvgaGv 30 
                 d  +iG  +  + + +G+++v+g+G+
  KKY14886.1 501 DGAVIGEKCMlTNTVIGKKAVIGPGC 526
                 55677777775578888888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3962.83
//
Query:       KKY14887.1  [L=448]
Description: putative peroxin pex22-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   11.0   0.1       0.32    9.6   0.1    1.7  1  OPT       OPT oligopeptide transporter protein


Domain annotation for each model (and alignments):
>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   1.8e-05      0.32     559     600 ..      12      53 ..       5     161 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 1.8e-05
         OPT 559 vgfylppslsialligglianlwlkrrdaewakkynyvlaaG 600
                 +g ++p++++++++ +gl+a++w+ r d+++ ++ + ++a G
  KKY14887.1  12 FGYWVPLAVTVTVATIGLAAWIWSERTDDDEESSEGEHFAGG 53 
                 799**********************77777777666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 2840.48
//
Query:       KKY14888.1  [L=610]
Description: putative hexokinase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-58  196.4   0.0    6.1e-58  196.0   0.0    1.2  1  Hexokinase_1  Hexokinase
    4.6e-43  147.4   0.0    8.9e-42  143.2   0.0    2.1  1  Hexokinase_2  Hexokinase


Domain annotation for each model (and alignments):
>> Hexokinase_1  Hexokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.0   0.0   6.8e-62   6.1e-58       2     199 .]      20     260 ..      19     260 .. 0.94

  Alignments for each domain:
  == domain 1  score: 196.0 bits;  conditional E-value: 6.8e-62
                   HHHHHHHH---HHHHHHHHHHHHHHHHHHHS.S.STS--EE----S---S--EEEEEEEEESSSEEEEEEEEEESSS.................... CS
  Hexokinase_1   2 leeilkqfelsdeklkelvdrfleemekgLakekeslkmlptyvtrlPtGkekGtylAlDlGgtnlRvllveLlges.................... 78 
                   l+++ k++ l++++l++l+ +f ++++k+La + ++ ++lpt+vt+lPtG+e G++lA+D+GgtnlRv +++Llge+                    
    KKY14888.1  20 LQDFTKPLVLDESTLHQLAFQF-SHVYKDLALN-SDEQFLPTPVTKLPTGNEIGQFLAIDVGGTNLRVGFIDLLGEHadnetsadskersretikka 114
                   789*******************.********77.5569************************************77777777788888888999999 PP

                   ...-EEEEEEE.EE--GGGGGSBHHHHHHHHHHHHHHHHHHH....ST..T-..S-EEEEEEE-SSEE-SBTT--EE-S--TT---TT-TTSBHHHH CS
  Hexokinase_1  79 ...kveitqek.ykipeelktgtaeeLFdfiakciaefleeegeekkeekee..eelplGftFSFPveqtsldegtlirwtKgfaikdvegkdvvql 169
                      +v++t ek ++i e+lk ++a++LF++i++cia++++++ +++  +k e  +elp+G+tFSFP++q+sl+++tl++++Kgf+i  +   +++++
    KKY14888.1 115 qrpRVRRTLEKaWPIGEHLKIDKADDLFAWIGDCIADVVADKLNAD-GTKMEipDELPMGVTFSFPMKQDSLSSATLMPTGKGFTI--TADTNLGSI 208
                   999***************************************9886.4455579********************************..9999***** PP

                   HHHHHHHTT.....................-.SEEEEEEE-HHHHHHHHHHH CS
  Hexokinase_1 170 lqealerkg.....................l.pvkvvalvNDTvgtllslaY 199
                   l ++++r++                     l ++k++a++NDTv+tl+slaY
    KKY14888.1 209 LLAGYARHTrrsssdedvdghpskrqkvnpLpKLKITAITNDTVATLASLAY 260
                   *****************************9746******************9 PP

>> Hexokinase_2  Hexokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.2   0.0   9.9e-46   8.9e-42       2     239 ..     272     596 ..     271     597 .. 0.88

  Alignments for each domain:
  == domain 1  score: 143.2 bits;  conditional E-value: 9.9e-46
                   EEEEESSSEEEEEEEEGGG-GGGTTTS.....-TTSEEEEE--GGGTTTT-SS-..--HHHHHHHHHSSSTTS-HHHHCCSHHHHHHHHHHHHHHHH CS
  Hexokinase_2   2 iGlIlGtGtNacyleklsnieklegkk.....eksgemviNtEwgafgdegklpllrtkyDkeldeespnpgeqlfEkmiSGmYLGelvrlvlldli 93 
                   +G+I+GtG+Na++ ++ls++ + ++ +     ++++e v+NtE+ + g    l  ++tk+D+eld++ p+pg+q++E+m++G+Y+Gelvr ++ d++
    KKY14888.1 272 AGIIVGTGCNATIPMPLSSLGESKSSSvksfsPQATETVVNTEMTISGACAPLYPITTKWDRELDAACPRPGFQPLEYMTGGRYIGELVRIIFHDYM 368
                   79*******************66666699***999999**********9555777*****************************************9 PP

                   C....TSSSC.....CCCSTTSS-THHHHHHHC--BTT-HHHHHHHHHCCS---.....-HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH-.... CS
  Hexokinase_2  94 e...ekllfkgk.seklktpysldteflseieedesedleevrevleellglesv....teedleivrevceavsrRaarlvAagiaallkklgk.. 180
                       e  + +g+   ++ +pys+ t+f+s + +  ++d e + e+ +++   es+    + + ++++r ++++v +R+a l+Aa +++ll  +g+  
    KKY14888.1 369 TtayEPKVPTGHlPAHIVHPYSFPTTFVSSFVARARSDEELAGELRRRIPPPESSnwtwSPSSAKALRLIARLVQTRSAGLIAASTIGLLACVGEis 465
                   954433555688566****************9876666666665544443333323445999******************************99999 PP

                   .......................................................................SSEEEEEESHHHHHSTTHHHHHHHHH CS
  Hexokinase_2 181 ....................................................................eekekvtvgvdGslyekypkfrerlqeal 209
                                                                                       +  e+ +++++G+++++yp+f+e++q+++
    KKY14888.1 466 lappndsptptttttaipvttteetstlnhdavesnstgplssakpfahliptrsrdglspgpgeqwkSGPEELVIAYTGGIIQHYPNFKEQCQRFI 562
                   ************************************************************999998874456788********************** PP

                   HHH.HT--S....-SEEEEE---TTTHHHHHHHH CS
  Hexokinase_2 210 rel.lgeepe...kkvklklaedGsgvGAAliaa 239
                   + l ++  p+   k+v l+ a dG ++GA+++a 
    KKY14888.1 563 DHLvMRAGPQeggKSVFLREATDGGIIGAGVLAG 596
                   ***6333333678******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 3749.08
//
Query:       KKY14889.1  [L=293]
Description: putative gamma interferon inducible lysosomal thiol reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-16   60.3   0.0    3.6e-16   59.3   0.0    1.5  1  GILT      Gamma interferon inducible lysosomal thiol reductas


Domain annotation for each model (and alignments):
>> GILT  Gamma interferon inducible lysosomal thiol reductase (GILT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0     2e-20   3.6e-16       2     103 ..     108     207 ..     107     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 2e-20
        GILT   2 vevyyeslCpdsrkfitkqllptlelklkkivdlklvpfGkakeeskeeeleftCqhGeeECegNklqaCalellkdeekalkliaCmes..skek... 95 
                 +e +++s+Cpd+r ++++ ++p +e k++++vd++l  +Gk    s+     ++C hG++EC gN++  Ca +l+++   +l + +Cm    +  k   
  KKY14889.1 108 LEAHIMSKCPDARLCLQELVVPSME-KISDKVDFQLSFIGKLDPGSD----AVECMHGPSECLGNIILLCAERLYPSAILHLGFANCMIGdyT--Kipd 199
                 57799********************.99************9988887....6************************9999*********9542..2345 PP

        GILT  96 eeaaekCa 103
                 ++ +e+Ca
  KKY14889.1 200 RDFVEQCA 207
                 77888997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 2002.84
//
Query:       KKY14890.1  [L=147]
Description: putative transcriptional activator xlnr [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.7   0.3       0.14   12.3   0.3    1.2  1  DUF4306   Domain of unknown function (DUF4306)


Domain annotation for each model (and alignments):
>> DUF4306  Domain of unknown function (DUF4306)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   7.9e-06      0.14       2      85 ..      12      95 ..      11      98 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.9e-06
     DUF4306  2 vQlvivlliflfsalvawyegsellskekeWkktakftkllkgsvedekqisqlDflvYaakfsPvfstiliisllYllalvvl 85
                v +++ ++  l  +l   ++   ll++++ W  +  f      +v+ ++ is++  +     f P+f+ + ++   +ll l++ 
  KKY14890.1 12 VAYGTHIMHVLHILLTGKWDPISLLDDNDLWISSESFITATSHAVNAAEAISDILEYDPDLSFMPFFFGVYLLQGSFLLLLIAD 95
                789999**************999**************999899*********9988888999********99988888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 952.86
//
Query:       KKY14891.1  [L=777]
Description: putative conserved glutamic acid-rich protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-19   70.2   0.0    2.2e-19   69.5   0.0    1.4  1  DUF2420   Protein of unknown function (DUF2420)


Domain annotation for each model (and alignments):
>> DUF2420  Protein of unknown function (DUF2420)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0   1.2e-23   2.2e-19       3     107 ..     321     419 ..     319     420 .. 0.96

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 1.2e-23
     DUF2420   3 edesllnaslselfaalRsfleekegelvsaekElvLeipeLdltltEdnvynkdislndilsifkiLkenskseedvpesLsitlslqprFvskynaL 101
                 +d+ l+ ++++el++a+R+ l+++    +++++ElvL++p+L+l+l+E + y+k++++ +il+++ +L++n+  +++ p + ++tl ++  ++s+y+ L
  KKY14891.1 321 QDAGLAFSPCDELLSACREVLGNS----IEETHELVLDFPSLGLHLSEGSSYSKQLTIAQILDVYLALCQND--HHESPGPVYCTLRTRVSLASQYAFL 413
                 68889999****************....********************************************..9999999****************** PP

     DUF2420 102 veladq 107
                 v+++++
  KKY14891.1 414 VSAVNN 419
                 *99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.52
# Mc/sec: 4530.93
//
Query:       KKY14892.1  [L=524]
Description: putative coatomer subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-21   75.6   0.1    5.7e-21   75.1   0.1    1.2  1  Adap_comp_sub   Adaptor complexes medium subunit family
    1.9e-08   34.4   0.3    3.2e-08   33.6   0.3    1.4  1  Clat_adaptor_s  Clathrin adaptor complex small chain
     0.0051   17.2   0.3      0.011   16.2   0.3    1.5  1  RPM2            Mitochondrial ribonuclease P subunit (RPM2)


Domain annotation for each model (and alignments):
>> Adap_comp_sub  Adaptor complexes medium subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.1   9.5e-25   5.7e-21      11     254 ..     278     517 ..     270     524 .] 0.90

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 9.5e-25
                    XX-EEEEEEEEEEEEEE-TTS-EEEEEEEEEEEEEE---TT-EEEEEE-SS-EE--SSEESEEEEETT-B-TT..HHHH-EEEE---S......EE CS
  Adap_comp_sub  11 kkneiyldviErvsvlvdkkGkilksevqGtiacksklsgmpelklgLndklnkekkielddvsfHqcVnldk..feservisFiPpd......ge 98 
                    ++  i++ + E +s+ ++++G ++  ev+G+++++++     +++l+L  + +       ++ +f +++n+dk  f s+++i++++        ++
     KKY14892.1 278 STSPIHVAIAEVISAKLSREGALQFFEVKGDLNLRISDPSFTKVSLSLVAQEGT------HKAQFRTHPNVDKalFTSNKTIQLKDTTkrfpsnNS 367
                    56789*************************************************......*************************98888887679 PP

                    EEEEEEEE...S--SS--SEEEEEEEEE.-TTTSEEEEEEEEEE-S-TT-EEEEEEEEEE--TT-EEEEEEESSTT-EEEEETTEEEEEE--EETT CS
  Adap_comp_sub  99 ftLmrYrl...sannvklPfsvkpkvkl.sgdevrveielklkenfkkkltlenvkisiplpkevsnlaiktskGkakynpeenaleWtikklpgg 190
                      ++r+r+     + + lP++ + +v++ s+d+  + ie++ +++++ ++ l +v+++ip ++  s++a+  s  +a y+ + ++leWti+ ++  
     KKY14892.1 368 IGVLRWRVtapADSTDVLPLTFTVWVNKsSDDSYTITIEYEFNSTSS-TSYLRDVVVTIPYTT--SEPAV--SSFDAMYEVTGDSLEWTIGHVDAD 458
                    9*******9998888889999999999977777899*******9985.688*********965..56655..5667899***************** PP

                    -EE..EEEEEEE--------------.EEEEEEEET--SS---EEEEEEE--...-----EEEEEEE CS
  Adap_comp_sub 191 nesslsgeleleaesekkeenprdgklvsveFkipgftaSgikVeslkveer...esykpfkwvryv 254
                    n+    g +e+ea+ e + e+ +    +sv F++ +  + ++ V+s+k+ e    e+++  k +r v
     KKY14892.1 459 NSN---GAFEFEAQAEDEAEFFP----MSVRFEMAKPFV-DVDVTSVKLLEGamdEEVNFEKVIRSV 517
                    *99...**************996....*********998.*********998998999999988876 PP

>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.3   5.4e-12   3.2e-08       7     135 ..       8     134 ..       2     141 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 5.4e-12
                     EE-TTS-EEEEEESSSS-CHHHHHHHHHHHHHHHTT-SSS-SEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTS-SHH CS
  Clat_adaptor_s   7 ilnkkgkvrlakfytavddkkkqklieevyelvsaRdsklsniveledlkviYkryasLYFvvivdeqeneliilelihlfvesLdkyfgnVcel 101
                     i+ + gk  l + + ++  ++ + l++   +l  +  ++   +ve ++++ +Y+   +LY v+i + q n l  ++ +hlf ++++++ +   e+
      KKY14892.1   8 IVTRGGKAVLSRQFREIARSRVEALLASFPKLADSG-TQ-HTVVEQDNVRFVYQPLDELYMVLITNRQSNILQDIDSLHLFAQVVSTVCKRLDER 100
                     788899999999999999999999999888887777.44.5899*************************************************** PP

                     HHHHCHHHHHHHHHCCEETTEES---HHHHHHCH CS
  Clat_adaptor_s 102 dlvfnfekvylildEivsgGeiletskkevlkrv 135
                     +++ n  ++ ++ dE+v+ G   + s +++   +
      KKY14892.1 101 EILRNAFELLSAFDELVTLGYRENLSLNQIKTFL 134
                     ********************99999998886555 PP

>> RPM2  Mitochondrial ribonuclease P subunit (RPM2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.3   1.8e-06     0.011      27      96 ..      47     118 ..      35     137 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.8e-06
        RPM2  27 tqikeiekiyekkeynkinalyksLkrnei...vpslelfekvLksivkrdlDnedidnklveLLtvyqDiis 96 
                 t +++ +  ++ + +++++ +  + ++ +i   ++sl+lf +v+ +++kr lD+ +i  + +eLL+ + ++++
  KKY14892.1  47 TVVEQDNVRFVYQPLDELYMVLITNRQSNIlqdIDSLHLFAQVVSTVCKR-LDEREILRNAFELLSAFDELVT 118
                 44444444444444555555444444445635566789**********98.9****************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1134  (0.0632495); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.49
# Mc/sec: 3225.47
//
Query:       KKY14893.1  [L=405]
Description: hypothetical protein UCRPC4_g06616 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.9e-105  351.2  12.3   4.5e-105  351.0  12.3    1.0  1  Mg_trans_NIPA  Magnesium transporter NIPA
    5.1e-06   26.7  28.7     0.0002   21.6   6.9    3.4  3  EamA           EamA-like transporter family


Domain annotation for each model (and alignments):
>> Mg_trans_NIPA  Magnesium transporter NIPA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.0  12.3    5e-109  4.5e-105       2     293 ..       5     294 ..       4     296 .. 0.98

  Alignments for each domain:
  == domain 1  score: 351.0 bits;  conditional E-value: 5e-109
  Mg_trans_NIPA   2 dfliGvlLavssslfigssfilkkkgllrlarkgevrageGGyaylkevlWwaGlltmavGeaanfaayafaPatLvtPLGalsvivsavlasllL 97 
                    d++iG+ La++s++ ig+sf++ kkgl  ++++        Gy+ylk +lWwaG++t+++Ge+anfaayafaPa+LvtPLGalsv++ avl  ++L
     KKY14893.1   5 DKYIGLALAITSTMAIGTSFVITKKGLNEASERHGFEG--DGYSYLKTPLWWAGIITLVIGEVANFAAYAFAPAILVTPLGALSVLIGAVLGAYFL 98 
                    789**************************998885655..79****************************************************** PP

  Mg_trans_NIPA  98 kekLkllgllGcllailGstvlvihaPkeeeieslkevadllvdpaflvyvilvvvvvlvlilyveprkGktnilvyitlcsllgsltvisvkalg 193
                    +e+L +lg+lGc ++++Gs+++v+haP  ++i++++e+ +++  p+fl+y++ v++ + v+i+ v+p++Gk+n l+yi +cs +gs++v+s+ka g
     KKY14893.1  99 DEELGVLGKLGCAICLIGSVIIVLHAPPDKDIKTVDEILHYALYPGFLLYCVAVIGFSCVMIYRVAPKYGKKNPLIYISICSTVGSVSVMSIKAFG 194
                    ************************************************************************************************ PP

  Mg_trans_NIPA 194 iaikltlaGkaqlkyalawilllvlvicvvlqinyLnkaldifntsivtPvyyvlfttlvivasailfkefleasvddvlgelsGfllvllgvfll 289
                    ia+kltl+G++q++++ ++ + +v+ +c+ +q+ny+nkal  f+tsiv P+yyv ftt ++ as ilf+ f+ a++ + l+ l+Gfl++++gv+ll
     KKY14893.1 195 IALKLTLNGNNQFTHPSTYAFGIVTGVCILTQMNYFNKALSQFSTSIVNPLYYVTFTTATLCASFILFRGFNTADAVNTLSLLCGFLIIFTGVYLL 290
                    ************************************************************************************************ PP

  Mg_trans_NIPA 290 hatr 293
                    +  r
     KKY14893.1 291 NLSR 294
                    9765 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.1    0.0016        14       2      28 ..       8      34 ..       7      37 .. 0.91
   2 !   21.6   6.9   2.2e-08    0.0002      71     136 ..      56     121 ..      49     122 .. 0.96
   3 !    6.6  10.5    0.0009         8      25     137 .]     168     285 ..     143     292 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0016
        EamA  2 lgillallaalfwaiyfvlskillrkv 28
                +g+ la+++++  +++fv++k++l++ 
  KKY14893.1  8 IGLALAITSTMAIGTSFVITKKGLNEA 34
                6899******************99875 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 2.2e-08
        EamA  71 gllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                 g++  v++ ++ f a    +a  ++++ +l++++ ++l++++l e l+++  lg++++l+G ++i+
  KKY14893.1  56 GIITLVIGEVANFAAYAFAPAILVTPLGALSVLIGAVLGAYFLDEELGVLGKLGCAICLIGSVIIV 121
                 8999**********************************************************9997 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0009
        EamA  25 lrkvspltltfvrfliagill.liiallkegkl......aklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgek 116
                  +k + + ++  + +++++ + +i a+  + kl      +  +++ +++ +++g ++++  +  f++al+  s s++ ++ +++   ++++++++l   
  KKY14893.1 168 GKKNPLIYISICS-TVGSVSVmSIKAFGIALKLtlngnnQFTHPSTYAFGIVTG-VCILTQMNYFNKALSQFSTSIVNPLYYVTFTTATLCASFILFRG 264
                 3333334444444.4444444133333333333333343345555577767777.677777889********************************999 PP

        EamA 117 ltlkqllgivlillGvllill 137
                 ++  + + ++  l+G l+i++
  KKY14893.1 265 FNTADAVNTLSLLCGFLIIFT 285
                 987776655555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 2573.10
//
Query:       KKY14894.1  [L=591]
Description: putative auxin efflux carrier superfamily [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-54  182.9   3.8    5.6e-53  179.7   3.8    2.0  1  Mem_trans  Membrane transport protein


Domain annotation for each model (and alignments):
>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.7   3.8   3.1e-57   5.6e-53       2     385 ..      56     576 ..      55     579 .. 0.88

  Alignments for each domain:
  == domain 1  score: 179.7 bits;  conditional E-value: 3.1e-57
   Mem_trans   2 vleavvplyvimllgYgsvkwvkiftpdqcsginrfVvlfavPllifhfisqnnpyemllrfiladvlvklivlillllgallskifkgslewtitlfs 100
                 v+eav++++++ l gY+ ++  ++f+ +q++ + +++v++++P+lif++++++ + e+l+++++++ ++++ ++i+ +   ++skif++++++++++++
  KKY14894.1  56 VFEAVLEVVCVSLPGYLIARL-GMFDAEQQKFVANLNVSLFTPCLIFTKLASQLTAEKLIDLAIIPFIFVVQTIISYVCARVISKIFRFKKRQQNFVVA 153
                 89*******************.***************************************************************************** PP

   Mem_trans 101 lstlpNtlvlgipllkalyge...................ygvslmvqvvvlqciiiytlllflfeyrgaklliseefp.dtaasivsikvdsdvvsld 179
                 + +++N+++l+i+l+ +l ++                   +g+++++++++l++ ++++++++++ ++++k++ +e    d +  ++ +    d    +
  KKY14894.1 154 MGVFGNSNSLPISLVISLSQTlkglhwdkipndnddevgaRGILYLLIFQQLGQLLRWSWGYNVLLKPANKYTEEEGGTmDVGFVEDGQARYRDDPEDS 252
                 ******************************************************************999999997777766665555566666666666 PP

   Mem_trans 180 grkpleteaeikedgklhvtvrksnasrsdivs.sstprpsnltnaeiyslq............................................... 230
                  ++ l   a  + +g  h   +    ++ ++ s +stp ++++    + s +                                               
  KKY14894.1 253 DEDRLLMGAVYDGEGATHSGDSLVTGNDTQSPSgESTPVNNRKFASVKSS-Rstsrsrnsnppellptpangnvlprqngqqngyghitsfpdveqskd 350
                 66677777777777777777666666666666667777774444433333.2588999999999*********************************** PP

   Mem_trans 231 ..................................................mtrlilimvlrklirnPntyssllglilslvsfkwnvimp......kii 273
                                                                     +   +   +++++nP+++++l+++i++ v+ ++++++       + +
  KKY14894.1 351 srstgfkgyvfdikdsiysaqiqakqcisakagaayqllppsaqkwlskiYSVTARFANGVHEFMNPPLWAMLIAIIVASVPALQHLFFDegtfvrNSV 449
                 *********************************************9998855555567789************************************** PP

   Mem_trans 274 qksisilgdaglpmalfslGlfLalqpkkiacgnsvatfa.........lavRlilgPlvmlvavlavgLrgslllvaivq............aAlPqg 351
                 +++i + g +++p++l++lG++La++   ++++ ++ +           l+ R++l  ++m++++++v     ++  ++++            +  P++
  KKY14894.1 450 TRAIGQSGGVAVPLILVVLGANLARNT--LPATDEFVDEKeernlliasLLSRMLLPTILMAPLLALVA----KFVPVSIVddkifvivcfllTGAPSA 542
                 ************************886..33333333333567889999999**999999999999998....333333335888888899******** PP

   Mem_trans 352 ivlfviAkeynvherelstllifgmlialpitlv 385
                  +l +i++ +nv+   +s++l+ ++++ +++ ++
  KKY14894.1 543 LQLAQICQVNNVFMGVMSKILFQSYVVWILPSTL 576
                 **************************97665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4088.24
//
Query:       KKY14895.1  [L=812]
Description: hypothetical protein UCRPC4_g06618 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-78  263.2   0.3    4.8e-78  262.7   0.3    1.2  1  Syja_N    SacI homology domain
    6.4e-38  129.0   0.0    1.3e-37  128.0   0.0    1.5  1  hSac2     Inositol phosphatase


Domain annotation for each model (and alignments):
>> Syja_N  SacI homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.7   0.3   5.4e-82   4.8e-78      62     320 .]     114     401 ..      13     401 .. 0.87

  Alignments for each domain:
  == domain 1  score: 262.7 bits;  conditional E-value: 5.4e-82
      Syja_N  62 ekkkeeke..........leekllklleklfessgsfYFsydlDltrslqrqlekssesskslplweraderFvWNrhllkplieaeldswllpviqGf 150
                 ++ +   +          l +++l+++ +++ ss+ fYFsyd+++tr+l    +     +++ p+ e+ade ++WN+h+ +p+i+a+++ ++lp++qGf
  KKY14895.1 114 NDGR---ReqqlpdttfpLTSRILRTT-RALLSSKCFYFSYDVNITRRLGGGNS----LWSKPPTGENADELYTWNKHMAQPFIDAGQNFFFLPIMQGF 204
                 1222...022356677888999**999.88889****************97765....578888889******************************** PP

      Syja_N 151 veqsklklsksqke...............................kekkevtltlisRrsrkraGtRylrRGiddeGnvANfvEtEqilevessekesk 218
                 v+q+++  ++ q++                               k+ +++ lt+isRrs+kr G+RylrRGiddeGn+AN vEtEqil++ + +++  
  KKY14895.1 205 VGQRAFIAQR-QHSgeghteaveslekileadrqfrknsddrrssKQPQSFLLTIISRRSIKRSGLRYLRRGIDDEGNAANTVETEQILSSPTWDTSLP 302
                 **99997653.2335788899999********************9999******************************************99999999* PP

      Syja_N 219 ilSfvqiRGSiPlfWsqeptlkykpkirierseeenleafkkHfekllkrYgkvvvvnLlekkgrEkkLgeayekavkklnklekekkklkyveFDfhk 317
                 + SfvqiRGSiPl++sq+p +++kp + +++s+++n++afk+Hfe+l +rYg++++  L++k+g+E+ +ge+ye+ vk++n+  +++++l++++FDfh+
  KKY14895.1 303 VRSFVQIRGSIPLYFSQSP-YSFKPIPILHQSKDANQTAFKSHFEELGRRYGAIQIAVLVDKHGSEAGIGEEYESFVKRYNE--QQRDQLDFEWFDFHS 398
                 *******************.788**********************************************************5..6789*********** PP

      Syja_N 318 eck 320
                 ec+
  KKY14895.1 399 ECR 401
                 **7 PP

>> hSac2  Inositol phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.0   0.0   1.4e-41   1.3e-37       2     114 ..     570     683 ..     569     684 .. 0.98

  Alignments for each domain:
  == domain 1  score: 128.0 bits;  conditional E-value: 1.4e-41
       hSac2   2 kavslakireeaiedckklvlsdedeeflggWlLlspdesnt.ksekeeervlLLTdkalyickydfnlekvssfervpLedikkIelGtyitstlsla 99 
                 + vsl++ir++aie+c+k+ +++e+e++l+gW++lsp+ +nt +s +++e+v+LLTd+a+y ck+d+n+ekv sfer++L++i++I++G+y+ts l+++
  KKY14895.1 570 PGVSLERIRQKAIETCSKITIQNEKEDLLQGWTMLSPSLPNTlRSLPFQESVVLLTDHAIYNCKFDWNTEKVGSFERIDLHSITNIHYGPYVTSVLTER 668
                 67899********************************************************************************************** PP

       hSac2 100 qsdkkenyglrieye 114
                 q d+++n+gl+i+y+
  KKY14895.1 669 QLDESRNIGLVITYN 683
                 **************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.49
# Mc/sec: 4982.18
//
Query:       KKY14896.1  [L=899]
Description: putative importin beta-2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-27   95.7   2.2    2.6e-15   56.5   0.0    8.2  7  HEAT_EZ        HEAT-like repeat
    5.4e-25   85.3   5.8    4.1e-05   23.5   0.0   10.1 11  HEAT           HEAT repeat
    3.5e-14   53.2   0.0    9.3e-06   25.8   0.0    4.3  4  Cnd1           non-SMC mitotic condensation complex subunit 1
    2.9e-13   50.0   0.0    0.00063   20.1   0.0    6.7  8  HEAT_2         HEAT repeats
    2.5e-11   44.0   0.0    0.00077   20.0   0.0    5.6  6  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
    8.1e-07   28.0   0.0       0.22   10.0   0.0    3.8  3  Adaptin_N      Adaptin N terminal region
    4.1e-06   26.5   0.0        2.6    7.6   0.0    5.9  6  CLASP_N        CLASP N terminal
    4.2e-06   26.2   0.0       0.11   11.6   0.0    3.7  3  MMS19_C        RNAPII transcription regulator C-terminal
      7e-05   22.9   0.3       0.19   11.8   0.1    4.0  2  Xpo1           Exportin 1-like protein
     0.0019   18.7   3.5      0.092   13.5   0.0    4.9  5  HEAT_PBS       PBS lyase HEAT-like repeat
     0.0099   15.8   0.0      0.068   13.1   0.0    2.5  2  DUF3437        Domain of unknown function (DUF3437)
  ------ inclusion threshold ------
      0.014   15.4   0.9        4.4    7.5   0.0    4.0  3  Arm            Armadillo/beta-catenin-like repeat
      0.015   15.1   0.2         11    5.7   0.0    3.5  2  RIX1           rRNA processing/ribosome biogenesis
      0.036   13.6   0.2        6.4    6.2   0.0    3.5  3  Tti2           Tti2 family
      0.052   13.5   1.6       0.53   10.2   0.1    3.0  3  IBN_N          Importin-beta N-terminal domain
      0.063   12.7   0.0       0.12   11.8   0.0    1.3  1  RIC1           RIC1
       0.11   12.9   0.0         10    6.5   0.0    3.4  3  TAF6_C         TAF6 C-terminal HEAT repeat domain


Domain annotation for each model (and alignments):
>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.053        56       3      52 ..     100     155 ..      98     157 .. 0.79
   2 ?   -1.7   0.0       4.4   4.7e+03       1      32 [.     352     380 ..     352     381 .. 0.60
   3 !   56.5   0.0   2.5e-18   2.6e-15       1      54 [.     390     443 ..     390     444 .. 0.98
   4 !    9.4   0.0    0.0014       1.5       2      34 ..     478     510 ..     463     519 .. 0.91
   5 ?    2.6   0.0      0.19     2e+02       3      54 ..     668     728 ..     666     729 .. 0.78
   6 ?    3.0   0.0      0.14   1.5e+02       6      40 ..     721     755 ..     716     757 .. 0.80
   7 !   10.6   0.0    0.0006      0.63       2      35 ..     760     793 ..     759     810 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.053
     HEAT_EZ   3 vRraAawaLGrlaggepel......lqplvpeilpaLlalLnddsdeVRaaAagaL 52 
                  +++A +aL+ +++ +++        q  +++i+p+ l    ++++++R +A+ +L
  KKY14896.1 100 AQEGAMAALAKICEDNRRMldkeihGQRPLDVIIPQVLEYTGNPNPKIRVYALKTL 155
                 5899999**99665555554666666669999999999999999999999999887 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.4
     HEAT_EZ   1 wrvRraAawaLGrlaggepel.lqplvpeilpa 32 
                 w +R   a+aL     + ++   qp+ ++ilp+
  KKY14896.1 352 WSLRKCSAAAL----DVFANVfHQPVFEVILPY 380
                 88898888888....555555244455555555 PP

  == domain 3  score: 56.5 bits;  conditional E-value: 2.5e-18
     HEAT_EZ   1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 w+ R+aA++aLG++a g++e ++p++pe++p+L+++Lnd ++ VR+ ++++Lg+
  KKY14896.1 390 WPKREAAVLALGAIADGCMEVVSPHLPELIPFLISCLNDQEPIVRQITCWCLGR 443
                 899**************************************************8 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.0014
     HEAT_EZ   2 rvRraAawaLGrlaggepellqplvpeilpaLl 34 
                  v++aAa+a+++l++  ++ l p+ + il++++
  KKY14896.1 478 KVQEAAASAFASLEEKSGNNLVPYTEPILRQFV 510
                 58999999**99999999999999999999998 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.19
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLl.....alLnddsd....eVRaaAagaLgn 54 
                 vR + ++ LG +a +  +++qp +++i+p L+     +  +d+++    +V  ++++ +g 
  KKY14896.1 668 VRQSSYALLGDCAINLYPQIQPWLSKIMPVLIrqvdlNIIRDEDSesglNVLNNVCWSCGE 728
                 78888888998777777889999999******88888888885444566778888888776 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.14
     HEAT_EZ   6 aAawaLGrlaggepellqplvpeilpaLlalLndd 40 
                 +++w  G+l + ++e+++p+v+++   +++ Ln++
  KKY14896.1 721 NVCWSCGELGAKAGEAMSPYVEALYQGFVSILNNE 755
                 55666666668999******************875 PP

  == domain 7  score: 10.6 bits;  conditional E-value: 0.0006
     HEAT_EZ   2 rvRraAawaLGrlaggepellqplvpeilpaLla 35 
                  v ++Aa+a+Grl  g++  l+p++++   ++l+
  KKY14896.1 760 SVNENAAMAIGRLGIGCAKELAPHLSQFAEPFLK 793
                 6899********8888888888888888887774 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       4.9   5.2e+03       8      26 ..      50      68 ..      48      70 .. 0.76
   2 ?   -2.4   0.0         8   8.4e+03      13      29 ..      97     113 ..      85     114 .. 0.71
   3 !    7.9   0.0    0.0041       4.3       1      25 [.     132     156 ..     132     160 .. 0.92
   4 !   10.6   0.0   0.00054      0.57       2      29 ..     174     201 ..     174     203 .. 0.91
   5 ?    0.8   0.0      0.74   7.8e+02      12      30 ..     350     368 ..     343     369 .. 0.81
   6 !   18.9   0.0   1.2e-06    0.0012       1      31 []     377     407 ..     377     407 .. 0.97
   7 !   23.5   0.0   3.9e-08   4.1e-05       1      29 [.     418     446 ..     418     448 .. 0.94
   8 ?    1.2   0.0      0.55   5.8e+02       7      18 ..     449     460 ..     446     461 .. 0.86
   9 !    7.6   0.0    0.0049       5.2       2      27 ..     465     490 ..     464     493 .. 0.88
  10 ?    5.1   0.1     0.031        32       3      28 ..     655     680 ..     653     683 .. 0.84
  11 ?   -1.9   0.0       5.4   5.7e+03      18      28 ..     763     773 ..     761     776 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 4.9
                HHT-SSHHHHHHHHHHHHH CS
        HEAT  8 llsDpspeVReaAakaLga 26
                 l+Dps ++R  A   +++
  KKY14896.1 50 TLQDPSGQIRGFAGTVITE 68
                69*******9888766665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 8
                 SHHHHHHHHHHHHHHHH CS
        HEAT  13 speVReaAakaLgalae 29 
                 spe  e A  aL++++e
  KKY14896.1  97 SPEAQEGAMAALAKICE 113
                 56666667888888887 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0041
                 HHHHHHHHHT-SSHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLg 25 
                 ++P +l+    p+p++R  A+k+L 
  KKY14896.1 132 IIPQVLEYTGNPNPKIRVYALKTLK 156
                 79*********************96 PP

  == domain 4  score: 10.6 bits;  conditional E-value: 0.00054
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                 l+ l +l +D+  eVR+  ++++++l+ 
  KKY14896.1 174 LNRLFQLANDQVTEVRRIICQSFVQLVD 201
                 67899999*****************986 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.74
                 SSHHHHHHHHHHHHHHHHC CS
        HEAT  12 pspeVReaAakaLgalaev 30 
                 + ++ R+ +a aL  +a v
  KKY14896.1 350 DQWSLRKCSAAALDVFANV 368
                 6899*********999875 PP

  == domain 6  score: 18.9 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHCS CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaevl 31 
                 +lP l ++l ++ +  ReaA++aLga+a ++
  KKY14896.1 377 ILPYLKENLGHQLWPKREAAVLALGAIADGC 407
                 89**************************997 PP

  == domain 7  score: 23.5 bits;  conditional E-value: 3.9e-08
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 l+P+l+++l+D++p VR+ ++++Lg+ +e
  KKY14896.1 418 LIPFLISCLNDQEPIVRQITCWCLGRYSE 446
                 79***********************9876 PP

  == domain 8  score: 1.2 bits;  conditional E-value: 0.55
                 HHHT-SSHHHHH CS
        HEAT   7 kllsDpspeVRe 18 
                 + l+Dp+ +VR+
  KKY14896.1 449 SHLQDPAERVRY 460
                 679********7 PP

  == domain 9  score: 7.6 bits;  conditional E-value: 0.0049
                 HHHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgal 27 
                 +  ll+ + D++ +V eaAa a++ l
  KKY14896.1 465 MEGLLHRMLDNNKKVQEAAASAFASL 490
                 566899999*************9987 PP

  == domain 10  score: 5.1 bits;  conditional E-value: 0.031
                 HHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgala 28 
                  +l  +++D + +VR+++   Lg+ a
  KKY14896.1 655 EMLAFCMEDRNNDVRQSSYALLGDCA 680
                 5677789**************99876 PP

  == domain 11  score: -1.9 bits;  conditional E-value: 5.4
                 HHHHHHHHHHH CS
        HEAT  18 eaAakaLgala 28 
                 e+Aa a+g+l 
  KKY14896.1 763 ENAAMAIGRLG 773
                 68******996 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.5e-05     0.016      19      78 ..      40     100 ..      37     125 .. 0.80
   2 ?    0.9   0.0      0.39   4.1e+02      64     124 ..     137     197 ..     130     206 .. 0.68
   3 !   25.8   0.0   8.9e-09   9.3e-06      19     119 ..     415     524 ..     393     561 .. 0.73
   4 ?    4.7   0.0     0.026        27      59      86 ..     653     680 ..     642     715 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-05
        Cnd1  19 veylvepLrkrLkDedpyVRktaaivvakLilnd.mvkekgflselaklleDenprVvana 78 
                 +ey+ +   ++L+D++ ++R  a  v+++Lil++ + ++ ++l++l++ll+++n +V+  a
  KKY14896.1  40 LEYIKSSTLSTLQDPSGQIRGFAGTVITELILQGgLLQWPQLLQDLLSLLSNTNGNVSPEA 100
                 67888888899*******************655549******************9998554 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.39
        Cnd1  64 aklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLl 124
                 ++   ++np+++  al  l+     +++a++ +l +++++l +  n+   + ++ i+++ +
  KKY14896.1 137 LEYTGNPNPKIRVYALKTLKIFIAPKPRALIASLETYLNRLFQLANDQVTEVRRIICQSFV 197
                 5556678888888888888888888888888888888888887555544445555555444 PP

  == domain 3  score: 25.8 bits;  conditional E-value: 8.9e-09
        Cnd1  19 veylvepLrkrLkDedpyVRktaaivvakL.....ilndmvkekg....flselaklleDenprVvanalaalteiseksenaiynllpdiisklsdal 108
                 + +l++ L ++L+D++p VR+ +  ++ +      +l+d  +       +++ l++ + D+n++V++ a +a+  + eks+n+++  +  i+ +++++ 
  KKY14896.1 415 LPELIPFLISCLNDQEPIVRQITCWCLGRYsewasHLQDPAERVRyfepMMEGLLHRMLDNNKKVQEAAASAFASLEEKSGNNLVPYTEPILRQFVQCF 513
                 5678999********************99999888666654433321146666666679********************99999999999999999865 PP

        Cnd1 109 necsewgqiti 119
                    + ++    
  KKY14896.1 514 GRYKDNNMYIL 524
                 55544444444 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.026
        Cnd1  59 flselaklleDenprVvanalaalteis 86 
                 ++++la ++eD n+ V++++ a+l +++
  KKY14896.1 653 LFEMLAFCMEDRNNDVRQSSYALLGDCA 680
                 7899999*************99998876 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.24   2.5e+02      10      59 ..      52     112 ..      46     121 .. 0.67
   2 !   11.4   0.0    0.0003      0.32       2      57 ..     134     198 ..     133     212 .. 0.80
   3 !   16.9   0.0   6.1e-06    0.0064      32      85 ..     377     439 ..     350     442 .. 0.74
   4 !   20.1   0.0     6e-07   0.00063       2      87 ..     379     487 ..     378     488 .. 0.74
   5 !   13.4   0.0   7.1e-05     0.075       1      59 [.     419     491 ..     419     510 .. 0.73
   6 ?    1.9   0.0      0.28     3e+02       4      70 ..     468     547 ..     465     550 .. 0.53
   7 ?    2.7   0.0      0.16   1.7e+02      35      70 ..     656     694 ..     614     698 .. 0.68
   8 ?    2.2   0.0      0.23   2.4e+02      37      69 ..     749     786 ..     704     796 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.24
      HEAT_2  10 ndpdpevrraairaLg.......rignpealpaLvelleded....pavRraaaeaLgaig 59 
                 +dp+ ++r  a  ++         ++ p++l+ L++ll++++    p+ ++ a  aL++i 
  KKY14896.1  52 QDPSGQIRGFAGTVITelilqggLLQWPQLLQDLLSLLSNTNgnvsPEAQEGAMAALAKIC 112
                 566666666666666644444434555799999*****88875566777888888888875 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.0003
      HEAT_2   2 daLlqalendpdpevrraairaLg.........rignp.ealpaLvellededpavRraaaeaLga 57 
                 ++ l++    p+p++r  a+++L           i++  ++l+ L++l++d+ ++vRr ++++ ++
  KKY14896.1 134 PQVLEYT-GNPNPKIRVYALKTLKifiapkpraLIASLeTYLNRLFQLANDQVTEVRRIICQSFVQ 198
                 6778888.99**************86666555444443366*****************99987665 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 6.1e-06
      HEAT_2  32 alpaLvellededpavRraaaeaLgaig..........dpealpaLkellddddddvvReaAae 85 
                 +lp+L e l ++ +  R+aa+ aLgai+          +pe +p+L  +l +d++++vR+ + +
  KKY14896.1 377 ILPYLKENLGHQLWPKREAAVLALGAIAdgcmevvsphLPELIPFLISCL-NDQEPIVRQITCW 439
                 68899999999999999999999999954455454444699999999988.5789999987655 PP

  == domain 4  score: 20.1 bits;  conditional E-value: 6e-07
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp..........ealpaLvellededpavRraaaeaLgai.......gdpe........alpaLkelldddd 75 
                 ++L + l  +  +  r aa+ aLg i++           e++p L+++l+d++p vR+  ++ Lg++       +dp+          + L+++++d +
  KKY14896.1 379 PYLKENL-GHQLWPKREAAVLALGAIADGcmevvsphlpELIPFLISCLNDQEPIVRQITCWCLGRYsewashlQDPAervryfepMMEGLLHRMLD-N 475
                 5667777.788888999*******66665555666666699************************88444443334445566666688999999985.6 PP

      HEAT_2  76 ddvvReaAaeaL 87 
                 +  v+eaAa+a 
  KKY14896.1 476 NKKVQEAAASAF 487
                 777899999886 PP

  == domain 5  score: 13.4 bits;  conditional E-value: 7.1e-05
      HEAT_2   1 ldaLlqalendpdpevrraairaLgrignp.........ea......lpaLvellededpavRraaaeaLgaig 59 
                 ++ L++ l nd +p vr+ ++++Lgr+ +          ++      ++ L+  + d +  v++aaa a + + 
  KKY14896.1 419 IPFLISCL-NDQEPIVRQITCWCLGRYSEWashlqdpaeRVryfepmMEGLLHRMLDNNKKVQEAAASAFASLE 491
                 57899999.99**************6655533334445511555445777777778999999999999877665 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.28
      HEAT_2   4 LlqalendpdpevrraairaLgrignp.......ealpaLvell......ededpavRraaaeaLga.igdpealpaLkel 70 
                 Ll ++  d +++v+ aa+ a +++ ++        + p+L++++      +d ++++ +  +++L++ +g + a p+L el
  KKY14896.1 468 LLHRM-LDNNKKVQEAAASAFASLEEKsgnnlvpYTEPILRQFVqcfgryKDNNMYILYDCVQTLAEtVGGEMAKPHLVEL 547
                 55556.577777777777777755555222233333444444442223334455666666666666524666666666665 PP

  == domain 7  score: 2.7 bits;  conditional E-value: 0.16
      HEAT_2  35 aLvellededpavRraaaeaLgaig..d.pealpaLkel 70 
                 +L  ++ed + +vR+     Lg ++  + p+  p+L ++
  KKY14896.1 656 MLAFCMEDRNNDVRQSSYALLGDCAinLyPQIQPWLSKI 694
                 333344777777887777777754433346666666655 PP

  == domain 8  score: 2.2 bits;  conditional E-value: 0.23
      HEAT_2  37 velleded.p.avRraaaeaLgaig...dpealpaLke 69 
                 v++l++e+ p  v ++aa+a+g++g    +e +p+L +
  KKY14896.1 749 VSILNNEEvPdSVNENAAMAIGRLGigcAKELAPHLSQ 786
                 55554443342588888888888876666777777765 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       2.3   2.4e+03      22      48 ..      37      63 ..      21      98 .. 0.78
   2 !   14.0   0.0   5.7e-05      0.06       3      86 ..     101     190 ..      99     199 .. 0.82
   3 !   20.0   0.0   7.3e-07   0.00077       2      89 ..     392     484 ..     391     492 .. 0.87
   4 ?   -0.3   0.0       1.6   1.7e+03      68      89 ..     652     673 ..     641     678 .. 0.79
   5 ?    0.4   0.0      0.96     1e+03       8      36 ..     674     702 ..     667     713 .. 0.78
   6 ?   -1.6   0.0         4   4.2e+03       7      37 ..     766     796 ..     762     804 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 2.3
  Vac14_Fab1_bd 22 keyleeivkpvlkcfsDkdsrvRyyac 48
                   k+ le i ++ l++++D + ++R +a 
     KKY14896.1 37 KPTLEYIKSSTLSTLQDPSGQIRGFAG 63
                   456777888889999999999998885 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 5.7e-05
  Vac14_Fab1_bd   3 rkggligLaavaia....lekk..ikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvks 86 
                    ++g++ +La +  +    l+k+   ++ l+ i++ vl++    + ++R ya  +l   +     +++  l++ ++ l++l+ D+ ++v++
     KKY14896.1 101 QEGAMAALAKICEDnrrmLDKEihGQRPLDVIIPQVLEYTGNPNPKIRVYALKTLKIFIAPKPRALIASLETYLNRLFQLANDQVTEVRR 190
                    566777777665432222555544567899*************************999999999999*******************9996 PP

  == domain 3  score: 20.0 bits;  conditional E-value: 7.3e-07
  Vac14_Fab1_bd   2 arkggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakva.....kgevlkllneifdalvklvaDsdesvksgae 89 
                    +r++++++L a+a +  + ++++l e+++ +++c++D++  vR  +c +l   +  a       e +++++ + ++l + + D++++v+++a+
     KKY14896.1 392 KREAAVLALGAIADGCMEVVSPHLPELIPFLISCLNDQEPIVRQITCWCLGRYSEWAshlqdPAERVRYFEPMMEGLLHRMLDNNKKVQEAAA 484
                    68999********************************************9666655411111457899*********************9986 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1.6
  Vac14_Fab1_bd  68 eifdalvklvaDsdesvksgae 89 
                     +f++l   + D +++v++++ 
     KKY14896.1 652 PLFEMLAFCMEDRNNDVRQSSY 673
                    5788999999999999998875 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.96
  Vac14_Fab1_bd   8 igLaavaialekkikeyleeivkpvlkcf 36 
                      L  +ai+l  +i++ l++i++++++ +
     KKY14896.1 674 ALLGDCAINLYPQIQPWLSKIMPVLIRQV 702
                    557789***************99987654 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 4
  Vac14_Fab1_bd   7 ligLaavaialekkikeyleeivkpvlkcfs 37 
                     +++  + i+ +k+++++l+++ +p lk++ 
     KKY14896.1 766 AMAIGRLGIGCAKELAPHLSQFAEPFLKSMV 796
                    5777888899999999999999999988775 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0051       5.4     121     221 ..      49     160 ..      37     166 .. 0.78
   2 !   10.0   0.0   0.00021      0.22     372     430 ..     167     225 ..     129     250 .. 0.82
   3 !    7.2   0.0    0.0015       1.6     427     486 ..     429     495 ..     414     520 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0051
                 HHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SS....HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHH...........HCS CS
   Adaptin_N 121 kllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkd....pgvvlaAvalleeikkndrlllkllpklvrrLcnll...........tel 204
                 ++l+d+s ++r  A + i+ l+ +   l+ +ql++++ +lls ++    p  +  A a+l +i ++d+   ++l k ++  ++ l           +++
  KKY14896.1  49 STLQDPSGQIRGFAGTVITELILQGGLLQWPQLLQDLLSLLSNTNgnvsPEAQEGAMAALAKI-CEDNR--RMLDKEIHG-QRPLdviipqvleytGNP 143
                 67999999********************9999***********998888999***********.88888..555554443.222223346666666888 PP

                 -HHHHHHHHHHHCC--- CS
   Adaptin_N 205 dpwlqvkiiklltrlar 221
                 +p + v+ +k+l++ ++
  KKY14896.1 144 NPKIRVYALKTLKIFIA 160
                 88888888888877665 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00021
                 CCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCGXXSHH CS
   Adaptin_N 372 atdaewvldvllellslsgesvkdeivevirdliqkvpelheeiiekLaellekiesee 430
                   + e++l+ l++l  ++ + v++ i++++ +l+ + pel +  i+ L++++ ++++++
  KKY14896.1 167 IASLETYLNRLFQLANDQVTEVRRIICQSFVQLVDTMPELLRPHISGLVDYILYQQQNQ 225
                 566799**********************************************9977765 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0015
                 XSHHHHHHHHHHHHHTTTTXTT..........HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXG CS
   Adaptin_N 427 eseearaaaiWllGeygelvsn.......tesasdllrslaekfvlesekvklqiltalvKlyltsp 486
                 +++ +r+   W+lG y+e +s+        +  + +++ l+ ++ ++++kv+ ++ +a++ l + s 
  KKY14896.1 429 QEPIVRQITCWCLGRYSEWASHlqdpaerVRYFEPMMEGLLHRMLDNNKKVQEAAASAFASLEEKSG 495
                 3444677788999999999999888875433667778888899999999999999999988876664 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.61   6.4e+02      29     107 ..      22      93 ..      18     124 .. 0.58
   2 !    7.6   0.0    0.0025       2.6     143     209 ..     144     205 ..     128     220 .. 0.69
   3 ?    1.4   0.0      0.18   1.9e+02     177     195 ..     418     436 ..     402     458 .. 0.82
   4 ?    1.9   0.0      0.13   1.4e+02     144     196 ..     620     672 ..     593     676 .. 0.65
   5 ?    4.4   0.0     0.023        24      74     102 ..     673     701 ..     668     708 .. 0.90
   6 ?   -1.0   0.0         1   1.1e+03      85     131 ..     734     780 ..     719     815 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.61
     CLASP_N  29 lklrslikgnvpedaveelleclkqlleailkalssLrttlsstgchllkelaiqlkeq.ldpmveillptLlkllgdtK 107
                 ++l+++ik n  ++ +++ le++k      l++l++ + ++   ++ ++ el+ q +         +ll+ Ll ll++t 
  KKY14896.1  22 INLKNYIKKN-YRSIPKPTLEYIK---SSTLSTLQDPSGQIRGFAGTVITELILQGGLLqWP----QLLQDLLSLLSNTN 93 
                 6777788877.7777778888888...66666666666666666666666666665543233....33333333333333 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0025
     CLASP_N 143 nvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfweffkvwPs 209
                 n+++R y+++ Lki++   +   ++l asl  +++ + l ++ +D  ++VR+   + f+++ +++P+
  KKY14896.1 144 NPKIRVYALKTLKIFIAPKP---RALIASL--ETYLNRLFQLANDQVTEVRRIICQSFVQLVDTMPE 205
                 67777777777777777777...5555555..66777777777777777777777777777777665 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.18
     CLASP_N 177 iekslkkgleDanptVRet 195
                 + + l+++l+D +p VR+ 
  KKY14896.1 418 LIPFLISCLNDQEPIVRQI 436
                 56889999******99996 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.13
     CLASP_N 144 vqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVReta 196
                 +    +s+ +++++++  e +ks++ a +    + ++l  ++eD n  VR+++
  KKY14896.1 620 KDFLVTSLDLISTIVQAIEPSKSAHLAVSSRPPLFEMLAFCMEDRNNDVRQSS 672
                 55556777888888888884444444444456777889999999999999875 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.023
     CLASP_N  74 chllkelaiqlkeqldpmveillptLlkl 102
                   ll ++ai l +q++p++ +++p+L++ 
  KKY14896.1 673 YALLGDCAINLYPQIQPWLSKIMPVLIRQ 701
                 67999*********************986 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 1
     CLASP_N  85 keqldpmveillptLlkllgdtK..kiisqnanqalaallsnasfspri 131
                 +e++ p+ve+l++ ++  l +    + + +na++a+  l   +   +++
  KKY14896.1 734 GEAMSPYVEALYQGFVSILNNEEvpDSVNENAAMAIGRLGIGCA--KEL 780
                 55566666666666666665543224555556655555544444..343 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1      0.02        21     279     418 ..      80     216 ..      77     220 .. 0.80
   2 !   11.6   0.0    0.0001      0.11     326     392 ..     370     435 ..     366     445 .. 0.86
   3 !    5.8   0.0     0.006       6.4      33     140 ..     542     646 ..     537     762 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.02
     MMS19_C 279 elldkLlelLs.edaelgqlvakafgvlvsddevvlskknhanirlLykQrfFstvlpklvegfkssdsetkenyLvALshllkhvPkslllpeLptLl 376
                 +ll+ Ll+lLs ++ +++ ++ ++    +++  +    +     +  + Qr  + ++p+++e   + +++++   L  L   ++  P++l+   L+t l
  KKY14896.1  80 QLLQDLLSLLSnTNGNVSPEAQEGAMAALAK--I-CEDNRRMLDKEIHGQRPLDVIIPQVLEYTGNPNPKIRVYALKTLKIFIAPKPRALIA-SLETYL 174
                 6788888999888888888888887777777..6.666666777778889999999999999999999999999999999999999988764.588888 PP

     MMS19_C 377 PlLlqaLdlpdaevkastLetlksileespslvsehlssLvp 418
                   L q  + + +ev++   + +  ++++ p+l+ +h+s Lv 
  KKY14896.1 175 NRLFQLANDQVTEVRRIICQSFVQLVDTMPELLRPHISGLVD 216
                 888887777778888888888888888888888888888886 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.0001
     MMS19_C 326 kQrfFstvlpklvegfkssdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevka 392
                  Q +F+ +lp+l e+   +   ++e+   AL   +++   +++ p+Lp+L+P+L+ +L+ +++ v++
  KKY14896.1 370 HQPVFEVILPYLKENLGHQLWPKREAAVLALGA-IADGCMEVVSPHLPELIPFLISCLNDQEPIVRQ 435
                 588999999999999999999999999999976.5667789*****************988887775 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.006
     MMS19_C  33 kqlfetlvirllnkldlvlksnessaayahailstllkllekkqtdlekeellnsyydrivprlltl...vvsaastsssiltddrllevlgriinliv 128
                 + l+e l++ l+ + ++v++++ +     + +l++l ++  +   d   ++ ++ ++dr v  ++++   +++ a++++ ++ d+ +l +  ++i++iv
  KKY14896.1 542 PHLVELLMPVLIGRWNQVSDQSRE----IFPLLECLGYVALAYG-DF-FSPFAQPIFDRCVKMIYENlqaFIAVANGQAIDEPDKDFLVTSLDLISTIV 634
                 789999999******999998765....999*****99999988.33.34455666666666666555546667777779******************* PP

     MMS19_C 129 rslssskqqevl 140
                 + +++sk  +++
  KKY14896.1 635 QAIEPSKSAHLA 646
                 *****9987765 PP

>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   0.00018      0.19      10     138 ..      64     183 ..      57     197 .. 0.68
   2 ?    2.0   0.0      0.18   1.9e+02      80     145 ..     415     483 ..     408     487 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHTTTTSTTHHHHHHHHHCT......HHHHHHHHHHHHHHHHHHHTSHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH CS
        Xpo1  10 ealaelflqeypnnWpsffddllsllsss.....psglelllriLkvlpeEiadfsrskleqerrndlkdllrsnvqkilelllqileqsqskkqssel 103
                  +++el+lq    +Wp++++dllslls+      p+++e  +  L  + e+             r+ l +++  +   +  ++ q+le+  + +  +++
  KKY14896.1  64 TVITELILQGGLLQWPQLLQDLLSLLSNTngnvsPEAQEGAMAALAKICEDN------------RRMLDKEIHGQ-RPLDVIIPQVLEYTGNPN--PKI 147
                 5899**********************99647777665655555555555543............44555566655.444445566666666644..777 PP

                 HHHHHHHHHHHTTTS-HHHHHT.SCHHHHHHHHCCS CS
        Xpo1 104 veavLkclsswvswidiglivn.npllnllfqlLsd 138
                    +Lk+l+ ++   +  li++ +++ln lfql +d
  KKY14896.1 148 RVYALKTLKIFIAPKPRALIASlETYLNRLFQLAND 183
                 777777777777777777777766677777776655 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTTS.....-HHHHHT.SCHHHHH.HHHC.CSCCCHHHH CS
        Xpo1  80 vqkilelllqileqsqskkqsselveavLkclsswvswi.....diglivn.npllnll.fqlL.sdpelreaa 145
                 +++++ +l+++l+ ++     + + + +  cl+++ +w      + + +   +p+++ l +++L ++++++eaa
  KKY14896.1 415 LPELIPFLISCLNDQE-----PIVRQITCWCLGRYSEWAshlqdPAERVRYfEPMMEGLlHRMLdNNKKVQEAA 483
                 7889999999998877.....66666666666666666511111334444334444333255555555556665 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       7.6     8e+03      11      26 ..      75      90 ..      74      91 .. 0.83
   2 ?   -1.7   0.0       6.6     7e+03       3      13 ..     102     112 ..     100     123 .. 0.82
   3 !   13.5   0.0   8.7e-05     0.092       2      27 .]     393     428 ..     392     428 .. 0.97
   4 ?   -1.0   0.0         4   4.2e+03       1      14 [.     479     492 ..     479     509 .. 0.84
   5 ?    1.2   0.0      0.81   8.5e+02       4      17 ..     764     780 ..     761     789 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 7.6
                HCTSGGGHHHHHHHCT CS
    HEAT_PBS 11 qlgdeeaipaLleaLq 26
                 l++++ ++ Ll +L 
  KKY14896.1 75 LLQWPQLLQDLLSLLS 90
                5899999999999986 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 6.6
                 HHHHHHHHHCT CS
    HEAT_PBS   3 raAakaLgqlg 13 
                   A+ aL+++ 
  KKY14896.1 102 EGAMAALAKIC 112
                 67999999997 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 8.7e-05
                 HHHHHHHHHHCTS..........GGGHHHHHHHCTC CS
    HEAT_PBS   2 RraAakaLgqlgd..........eeaipaLleaLqd 27 
                 R aA+ aLg++ d          +e ip L+ +L+d
  KKY14896.1 393 REAAVLALGAIADgcmevvsphlPELIPFLISCLND 428
                 99********************************98 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 4
                 HHHHHHHHHHHCTS CS
    HEAT_PBS   1 vRraAakaLgqlgd 14 
                 v+ aAa a + l  
  KKY14896.1 479 VQEAAASAFASLEE 492
                 899*****998865 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.81
                 HHHHHHHHCTS...GGG CS
    HEAT_PBS   4 aAakaLgqlgd...eea 17 
                 +Aa a+g+lg    +e 
  KKY14896.1 764 NAAMAIGRLGIgcaKEL 780
                 7********98665555 PP

>> DUF3437  Domain of unknown function (DUF3437)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   6.4e-05     0.068       3      48 ..     392     437 ..     391     449 .. 0.87
   2 ?   -2.9   0.0       6.3   6.7e+03       4      36 ..     804     836 ..     802     862 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.4e-05
     DUF3437   3 erhaavlglsAlvlafpydvPkwlpevleeLaraardpapirktvk 48 
                 +r aavl+l+A+   +   v ++lpe++  L ++ +d++pi ++++
  KKY14896.1 392 KREAAVLALGAIADGCMEVVSPHLPELIPFLISCLNDQEPIVRQIT 437
                 5789***********************************7666554 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.3
     DUF3437   4 rhaavlglsAlvlafpydvPkwlpevleeLara 36 
                 + +a lg   ++  +p  + + l + ++++a +
  KKY14896.1 804 KASAFLGFNMIIAQNPQAMDTALADYFTAVAMW 836
                 667788888888888888888888888888774 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       1.4   1.5e+03      17      40 ..      85     112 ..      83     113 .. 0.87
   2 ?    7.5   0.0    0.0042       4.4      14      37 ..     419     442 ..     414     445 .. 0.92
   3 ?    2.9   0.0      0.12   1.2e+02      17      37 ..     468     488 ..     465     490 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.4
                 HHHHTT....TSSHHHHHHHHHHHHHHT CS
         Arm  17 LvrLLs....sedeevqeeAawALsNLa 40 
                 L++LLs    + ++e qe A +AL+ ++
  KKY14896.1  85 LLSLLSntngNVSPEAQEGAMAALAKIC 112
                 7888888888999999999999999888 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0042
                 HHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm  14 vppLvrLLssedeevqeeAawALs 37 
                 +p L+++L+++ + v++  +w+L+
  KKY14896.1 419 IPFLISCLNDQEPIVRQITCWCLG 442
                 899********************8 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.12
                 HHHHTTTSSHHHHHHHHHHHH CS
         Arm  17 LvrLLssedeevqeeAawALs 37 
                 L++ + + + +vqe+Aa+A +
  KKY14896.1 468 LLHRMLDNNKKVQEAAASAFA 488
                 4444558999********986 PP

>> RIX1  rRNA processing/ribosome biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.034        36     132     173 ..     169     214 ..     164     220 .. 0.87
   2 ?    5.7   0.0     0.011        11     127     158 ..     409     440 ..     407     452 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.034
        RIX1 132 nlpkfitallqlleee....letvlealstllplhPttfRpfanki 173
                 +l ++++ l+ql++++       +++++ +l+ + P  +Rp+ + +
  KKY14896.1 169 SLETYLNRLFQLANDQvtevRRIICQSFVQLVDTMPELLRPHISGL 214
                 689999********8899999999******************8866 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.011
        RIX1 127 Eiltpnlpkfitallqlleeeletvlealstl 158
                 E+++p+lp +i+ l++ l+++   v ++ + +
  KKY14896.1 409 EVVSPHLPELIPFLISCLNDQEPIVRQITCWC 440
                 99*****************6544444444445 PP

>> Tti2  Tti2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0061       6.4     113     160 ..     120     167 ..     111     184 .. 0.81
   2 ?    0.6   0.0      0.32   3.3e+02      49      74 ..     290     315 ..     289     362 .. 0.79
   3 ?    1.5   0.0      0.16   1.7e+02     117     148 ..     411     442 ..     387     451 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0061
        Tti2 113 qsk.eieanwplivPpiLnllDdtdtsvKlrGlklLqtlleklesskll 160
                 +++ + ++ + +i+P +L    ++++++++ +lk L+ ++++ +++ l+
  KKY14896.1 120 DKEiHGQRPLDVIIPQVLEYTGNPNPKIRVYALKTLKIFIAPKPRA-LI 167
                 555322678999****************************998887.44 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.32
        Tti2  49 sklrplfsksspktpkitaaGrkaal 74 
                 + lrp f+ks+ ++++ +a G++ + 
  KKY14896.1 290 EDLRPTFAKSKASRNAAKAGGLNENG 315
                 579******99999999999988776 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.16
        Tti2 117 ieanwplivPpiLnllDdtdtsvKlrGlklLq 148
                 ++ ++p ++P++++ l+d+++ v+   + +L 
  KKY14896.1 411 VSPHLPELIPFLISCLNDQEPIVRQITCWCLG 442
                 47899*******************99998886 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1    0.0005      0.53      37      73 ..      22      52 ..      19      53 .. 0.92
   2 ?   -3.5   0.0       9.5     1e+04      12      26 ..      79      93 ..      77     107 .. 0.80
   3 ?    0.8   0.0      0.46   4.8e+02      21      73 ..     136     197 ..     133     198 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0005
                HHHHHHHHHHGGSCCCHCGSXHHHHHHHHHHHHHHHH CS
       IBN_N 37 lyLknlitkhWsdeeekqslpseekeqIrnnllnllg 73
                + Lkn+i+k+++      s+p+ + e+I+++ l +l 
  KKY14896.1 22 INLKNYIKKNYR------SIPKPTLEYIKSSTLSTLQ 52
                67**********......************9999886 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 9.5
                TCHHHHHHHHHHCTT CS
       IBN_N 12 pgflsallqilanse 26
                p+ l+ ll++l+n++
  KKY14896.1 79 PQLLQDLLSLLSNTN 93
                788899999999965 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.46
                 HHHCTTSH.HHHHHHHHHHHHHHHHHHGGSCCCHC..........GSXHHHHHHHHHHHHHHHH CS
       IBN_N  21 ilansese.levRqlAalyLknlitkhWsdeeekq..........slpseekeqIrnnllnllg 73 
                 +l+ + ++ + +R+ A+ +Lk +i  + + ++             +l +++ +++r  + ++++
  KKY14896.1 136 VLEYTGNPnPKIRVYALKTLKIFIAPK-P-RALIAsletylnrlfQLANDQVTEVRRIICQSFV 197
                 566666663489999999999999988.3.3322246777888888888888888888887766 PP

>> RIC1  RIC1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00011      0.12      97     155 ..     446     510 ..     436     518 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
        RIC1  97 eeAlelassyqklsyFahaLElLLhevLeeeadakep......sda.seeeealLpavvefldefp 155
                 e A +l    +++ yF+ ++E LLh++L+++ + +e       s   +++ ++l+p +  +l++f 
  KKY14896.1 446 EWASHLQDPAERVRYFEPMMEGLLHRMLDNNKKVQEAaasafaS-LeEKSGNNLVPYTEPILRQFV 510
                 567888899999*******************9999885554441.145677788888777777775 PP

>> TAF6_C  TAF6 C-terminal HEAT repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.5   1.5e+03      20      76 ..      56     111 ..      27     119 .. 0.69
   2 ?    6.5   0.0    0.0096        10      15      39 ..     347     371 ..     301     415 .. 0.86
   3 ?    1.3   0.0      0.43   4.5e+02      14      80 ..     471     539 ..     432     548 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.5
      TAF6_C  20 waLRdfAAslLakilkkyss.syktLkprvtrtllkvlldpkkslgtlyGallglaal 76 
                  ++R fA+ ++ +++ + +  + ++L + ++++l+++    + s++++ Ga+ +la++
  KKY14896.1  56 GQIRGFAGTVITELILQGGLlQWPQLLQDLLSLLSNTN--GNVSPEAQEGAMAALAKI 111
                 56777777777776655543144566666666666555..467788888888888876 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0096
      TAF6_C  15 eledhwaLRdfAAslLakilkkyss 39 
                 + ed+w+LR+ +A  L+  ++ +++
  KKY14896.1 347 DPEDQWSLRKCSAAALDVFANVFHQ 371
                 57899************99999887 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.43
      TAF6_C  14 seledhwaLRdfAAslLakilkkysssyktLkprvtrtllkvlldp.kkslgtlyGallglaal.Geea 80 
                 + l+++ ++ + AAs  a++ +k +++    ++ ++r + + +    ++++  ly ++ +la+  G e+
  KKY14896.1 471 RMLDNNKKVQEAAASAFASLEEKSGNNLVPYTEPILRQFVQCFGRYkDNNMYILYDCVQTLAETvGGEM 539
                 567888889999999999999999999999999999999999987646778889999999998776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (899 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.53
# Mc/sec: 5130.08
//
Query:       KKY14897.1  [L=294]
Description: putative integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0005   20.2  12.0     0.0012   19.0   9.2    2.5  2  Cytochrom_B561   Eukaryotic cytochrome b561
      0.002   18.6   7.1     0.0029   18.1   7.1    1.2  1  DUF4604          Domain of unknown function (DUF4604)
     0.0025   17.9   6.6     0.0047   16.9   0.3    2.9  3  ETRAMP           Malarial early transcribed membrane protein 
  ------ inclusion threshold ------
      0.056   13.2  11.1       0.06   13.1   9.5    1.9  2  DUF2427          Domain of unknown function (DUF2427)
      0.082   12.6   0.2       0.68    9.6   0.0    2.1  2  FAM176           FAM176 family
      0.092   12.2   5.6        3.3    7.1   4.7    2.2  2  EST1_DNA_bind    Est1 DNA/RNA binding domain
       0.12   13.0   5.0       0.14   12.7   1.4    2.7  3  OAD_gamma        Oxaloacetate decarboxylase, gamma chain
       0.18   12.9   0.4        1.4   10.0   0.2    2.2  2  Conotoxin        Conotoxin
       0.22   11.7  15.2        1.4    9.1   0.1    2.7  3  DUF4079          Protein of unknown function (DUF4079)
       0.23   11.2   5.4       0.35   10.6   5.4    1.2  1  BCIP             p21-C-terminal region-binding protein
        0.6   10.1   5.8        2.3    8.2   4.6    2.0  2  Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
        2.1    9.3   7.1       0.27   12.2   0.4    2.9  4  EphA2_TM         Ephrin type-A receptor 2 transmembrane domai
        4.5    7.0   8.4         95    2.7  10.2    2.2  2  DUF3464          Photosynthesis affected mutant 68
        4.8    7.4  19.6        1.3    9.2  16.7    1.5  2  AP3D1            AP-3 complex subunit delta-1
        8.1    5.9  12.6         11    5.5  12.6    1.1  1  Topoisom_I_N     Eukaryotic DNA topoisomerase I, DNA binding 


Domain annotation for each model (and alignments):
>> Cytochrom_B561  Eukaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   9.2     1e-06    0.0012       2      96 ..      47     134 ..      46     152 .. 0.79
   2 ?    1.0   0.0      0.37   4.4e+02     110     130 ..     192     213 ..     178     217 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1e-06
                     HHHHHHHHHTHHHHHHHTHHHHS-S...-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SS-SHHHHHHHHHHHHHHHHHHHHHHHHTS CS
  Cytochrom_B561   2 HpvlmviGfvllmgeaiLvyrvsstrklskktkkllHlilqllalilavvgllavfksknekeianlyslHswlGlvtvilfllqlvlGfvlfll 96 
                     H +l ++  v+l+  + +++r+  +   + + +  +H+i+q+++l+  + ++ + +   +  + + l s H+++Glv+++l ++q +lG++  ++
      KKY14897.1  47 HGILACLVWVILIPLGAILFRM--I---KGRKSLWVHAIIQIVSLAAYIGAVGMGIWMAK--NFHLLDSAHAIIGLVVFCLAMIQPSLGIYHHII 134
                     8889999999999999999997..3...5567788********99988877776555544..5899***********************987654 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.37
                     H.HHHHHHHHHHHHHHHHHHHH CS
  Cytochrom_B561 110 l.HvllGlvifvlaivtallGl 130
                     + H+++G +++ l++++  lG+
      KKY14897.1 192 VvHRYVGRITLTLGMINGGLGI 213
                     4599*********999988887 PP

>> DUF4604  Domain of unknown function (DUF4604)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   7.1   2.4e-06    0.0029     142     167 ..     248     273 ..     214     275 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.4e-06
     DUF4604 142 kkekekkkakkkkkkkkkkkkkkklL 167
                 +++++kkk+kkkkkkkkkkkkkkk+ 
  KKY14897.1 248 QQQQKKKKKKKKKKKKKKKKKKKKKI 273
                 34444555555555555555555554 PP

>> ETRAMP  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.7   3.2e+03       7      30 ..       8      31 ..       4      38 .. 0.61
   2 ?    3.3   0.7     0.071        84      54      82 ..      73     102 ..      43     103 .. 0.77
   3 !   16.9   0.3     4e-06    0.0047      33      60 ..     251     275 ..     139     283 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.7
      ETRAMP  7 llffafLlavnlltpeslcdevnk 30
                +++f+ L ++  + ++s++ + nk
  KKY14897.1  8 SILFLALPSIVTAESQSSASALNK 31
                456666666666666666665554 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.071
      ETRAMP  54 Kliiistiatal.allvasalGlgiykkkk 82 
                 K +   +i+ ++ +++  +a+G+gi + k+
  KKY14897.1  73 KSLWVHAIIQIVsLAAYIGAVGMGIWMAKN 102
                 5555555554440445679******99875 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 4e-06
      ETRAMP  33 ekakkaikkiddkiekkkkkkKliiist 60 
                 +k+kk+ kk+++k +kkkkkkK   is+
  KKY14897.1 251 QKKKKKKKKKKKKKKKKKKKKK---ISS 275
                 3334444444444444434444...444 PP

>> DUF2427  Domain of unknown function (DUF2427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   9.5     5e-05      0.06      16     103 ..      42     132 ..      33     134 .. 0.76
   2 ?   -3.0   0.0       5.4   6.5e+03      72      94 ..     188     207 ..     181     216 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5e-05
     DUF2427  16 salwvHiilmtlalvvvyPva.lvLslaksr...w.ylpvqivnlvlavlglllghiykgstPelypnniyaklswillillavqvvlavllk 103
                 +++++H il  l++v++ P++ + ++++k r   w +  +qiv+l+  + ++ +g+   +++  l   +++a ++ +++ l ++q  l+++ +
  KKY14897.1  42 RIIYAHGILACLVWVILIPLGaILFRMIKGRkslWvHAIIQIVSLAAYIGAVGMGIWMAKNF-HL-LDSAHAIIGLVVFCLAMIQPSLGIYHH 132
                 589*****************825568888551223244556666666665555665555555.54.79*********************9976 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.4
     DUF2427  72 tPelypnniyaklswillillav 94 
                 t    p+ +++ +++i l l ++
  KKY14897.1 188 T---IPGVVHRYVGRITLTLGMI 207
                 4...4777777777777666555 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.41   4.9e+02     106     128 ..      19      41 ..      11      43 .. 0.86
   2 ?    9.6   0.0   0.00057      0.68      28      70 ..     227     269 ..     219     277 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.41
      FAM176 106 saeelerAqRlEeReriirEIWr 128
                  ae+   A  l +Re+ i E W 
  KKY14897.1  19 TAESQSSASALNKREHSIPEWWI 41 
                 68889999************996 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00057
      FAM176  28 lgvcvGLlltLcllviriscrkdlerlkkkkkklkeesekase 70 
                  gv  G +    llv+  + +++ +++kkkkkk+k++++k+++
  KKY14897.1 227 YGVVAGVIWIGYLLVVGGTFQQQQQKKKKKKKKKKKKKKKKKK 269
                 689999999999*********9999777777666666655433 PP

>> EST1_DNA_bind  Est1 DNA/RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.03        36      81     103 ..      29      51 ..       9      70 .. 0.81
   2 ?    7.1   4.7    0.0028       3.3      64     102 ..     250     284 ..     244     289 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.03
                    ---HHHHHHHHHHTTHHHHHHHH CS
  EST1_DNA_bind  81 ektpeellkrliilFlrlhgklf 103
                      ++e+ +++++i++++ hg+l 
     KKY14897.1  29 LNKREHSIPEWWIRIIYAHGILA 51 
                    46899***************986 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0028
                    T-HHHHHHHHHHHHH.TT---HHHHHHHHHHTTHHHHHHH CS
  EST1_DNA_bind  64 rkklekgenkqskes.kqektpeellkrliilFlrlhgkl 102
                    ++     ++k++k++ k++k+++++ k++ ++F++l+++ 
     KKY14897.1 250 QQ-----KKKKKKKKkKKKKKKKKKKKKISSHFIYLISQA 284
                    22.....222222233448999999************976 PP

>> OAD_gamma  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       9.5   1.1e+04      20      39 ..       6      25 ..       4      33 .. 0.56
   2 ?   -0.2   0.0       1.3   1.5e+03      12      57 ..     114     159 ..     112     174 .. 0.75
   3 ?   12.7   1.4   0.00012      0.14      30      60 ..     245     272 ..     225     289 .. 0.54

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 9.5
   OAD_gamma 20 lLslvislfskiikkkakkk 39
                +Ls+++ ++  i+++++  +
  KKY14897.1  6 MLSILFLALPSIVTAESQSS 25
                55666555555555555444 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.3
   OAD_gamma  12 gvVFvvLilLslvislfskiikkkakkkkkkakaaaaaaaaaaaaa 57 
                 g V ++L+++   + + ++ii  k k   ++ ++++ +++++++++
  KKY14897.1 114 GLVVFCLAMIQPSLGIYHHIIFMKPKHHFSTTTTPTLNPSPTNSTT 159
                 6777788888888888888888888888888888887777776654 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 0.00012
   OAD_gamma  30 kiikkkakkkkkkakaaaaaaaaaaaaaeld 60 
                  + + ++kkkkkk+k++++++++++++   +
  KKY14897.1 245 TFQQQQQKKKKKKKKKKKKKKKKKKKK---K 272
                 444445555555555555555555443...3 PP

>> Conotoxin  Conotoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.4   1.7e+03       5      31 ..       5      31 ..       4      37 .. 0.67
   2 ?   10.0   0.2    0.0012       1.4      24      51 ..     247     274 ..     233     288 .. 0.52

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.4
                XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   Conotoxin  5 cvlivavLllttlvtadldgdqpadrk 31
                ++l ++ L l+ +vta++++   a  k
  KKY14897.1  5 IMLSILFLALPSIVTAESQSSASALNK 31
                789999999997777766655554444 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0012
                 XXXXXXXXXXXXXXXXXXXXXXXXXXEB CS
   Conotoxin  24 gdqpadrkakrledrkseekkklkkece 51 
                 ++q++++k+k+++++k+++kkk+kk+++
  KKY14897.1 247 QQQQQKKKKKKKKKKKKKKKKKKKKKIS 274
                 2333333333333333444444444444 PP

>> DUF4079  Protein of unknown function (DUF4079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   8.2    0.0071       8.5       9     135 ..       6     129 ..       1     132 [. 0.75
   2 ?   -2.7   0.0       5.1   6.1e+03      84      97 ..     194     207 ..     182     221 .. 0.57
   3 ?    9.1   0.1    0.0011       1.4       8      60 ..     230     280 ..     224     284 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0071
     DUF4079   9 mvllvfpllgavaylG.wqtrqrrlqskaerkekipkkvrdeHvklgslllllvvlgaigglvllylrrgklfpssHlyaGlavvvLlalsaalvpeiq 106
                 m+ ++f+ l   ++++  q  ++     ++r+ +ip++  +  + +g l  l+ v++   g +l  + +g+   + H ++ ++ ++  + ++ +   + 
  KKY14897.1   6 MLSILFLALPS-IVTAeSQSSAS---ALNKREHSIPEWWIRIIYAHGILACLVWVILIPLGAILFRMIKGRKSLWVHAIIQIVSLAAYIGAVGMGIWMA 100
                 44444444444.33331222222...3347899999999999999999998888888888888888888888888999999999999999999999999 PP

     DUF4079 107 kgkstaRtlHialnvlalllfawqaitGl 135
                 k+ + + ++H++++ ++++l ++q   G+
  KKY14897.1 101 KNFHLLDSAHAIIGLVVFCLAMIQPSLGI 129
                 99999999999999999999999987776 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.1
     DUF4079  84 HlyaGlavvvLlal 97 
                 H y+G + ++L ++
  KKY14897.1 194 HRYVGRITLTLGMI 207
                 33333333333332 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0011
     DUF4079   8 lmvllvfpllgavaylG..wqtrqrrlqskaerkekipkkvrdeHvklgslllll 60 
                 +++++++ +l +   +G  +q +q++ ++k ++k+k +kk +++  k+ s  + l
  KKY14897.1 230 VAGVIWIGYLLV---VGgtFQQQQQKKKKK-KKKKKKKKKKKKKKKKISSHFIYL 280
                 444444444444...342366666655555.555555666677777777766655 PP

>> BCIP  p21-C-terminal region-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   5.4    0.0003      0.35     158     192 ..     238     273 ..     233     283 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0003
        BCIP 158 hylilskvykevkskedekkkkkkkkkkkkkkk.se 192
                 ++l++  +++++++k+++kkkkkkkkkkkkkkk + 
  KKY14897.1 238 YLLVVGGTFQQQQQKKKKKKKKKKKKKKKKKKKkKI 273
                 788888899887766655333333333333332123 PP

>> Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.6    0.0019       2.3      57     157 ..       5     109 ..       1     117 [. 0.83
   2 ?    0.9   0.0      0.33   3.9e+02      55      78 ..     226     250 ..     184     264 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0019
  Abhydrolase_9_N  57 avvalvvllvalvlaarwQrelralmgaeplgaaeyllvl....lvallvfalllllgrllralvrllarllgrvlprrvaavlgvlvvvvlvv 146
                      ++++++ l++  ++ a+ Q + +al + e+  + ++++++    ++a lv+++l+ lg +l ++++  ++l  + + + v+ ++ + +v++ ++
       KKY14897.1   5 IMLSILFLALPSIVTAESQSSASALNKREHSIPEWWIRIIyahgILACLVWVILIPLGAILFRMIKGRKSLWVHAIIQIVSLAAYIGAVGMGIW 98 
                      456667777778899999********999988888887753333689999999999999999999999999999999***************** PP

  Abhydrolase_9_N 147 llvdgvvvrgv 157
                      ++ +  +++ +
       KKY14897.1  99 MAKNFHLLDSA 109
                      99998888766 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.33
  Abhydrolase_9_N  55 alavval.vvllvalvlaarwQrel 78 
                      a+ vva  +++ ++lv++ + Q+++
       KKY14897.1 226 AYGVVAGvIWIGYLLVVGGTFQQQQ 250
                      2222222123333333333333333 PP

>> EphA2_TM  Ephrin type-A receptor 2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       9.1   1.1e+04      10      22 ..       5      17 ..       1      34 [. 0.39
   2 ?   -1.7   0.5       4.6   5.5e+03       6      23 ..      49      66 ..      43      75 .. 0.48
   3 ?   -1.2   0.0       3.3   3.9e+03       5      17 ..     111     123 ..     108     167 .. 0.70
   4 ?   12.2   0.4   0.00022      0.27       3      47 ..     227     269 ..     224     286 .. 0.54

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 9.1
    EphA2_TM 10 vllvilvilvlvl 22
                ++l il +    +
  KKY14897.1  5 IMLSILFLALPSI 17
                3333322222222 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.6
    EphA2_TM  6 vaglvllvilvilvlvlv 23
                ++++++ vil+ l  +l+
  KKY14897.1 49 ILACLVWVILIPLGAILF 66
                344444444444444443 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 3.3
    EphA2_TM   5 avaglvllvilvi 17 
                 a++glv++++++i
  KKY14897.1 111 AIIGLVVFCLAMI 123
                 4555555554443 PP

  == domain 4  score: 12.2 bits;  conditional E-value: 0.00022
    EphA2_TM   3 aaavaglvllvilvilvlvlvrrrsknrkqksdlkskeekkeeen 47 
                  ++vag++ +  l+++   + ++++k++k+k+++  k++kk++++
  KKY14897.1 227 YGVVAGVIWIGYLLVVGGTFQQQQQKKKKKKKKK--KKKKKKKKK 269
                 5567777777666666666555555555555443..122222211 PP

>> DUF3464  Photosynthesis affected mutant 68
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.6   1.9e+03      49      68 ..     187     205 ..     138     212 .. 0.58
   2 ?    2.7  10.2      0.08        95       9      32 ..     247     270 ..     244     288 .. 0.49

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.6
     DUF3464  49 aaiPevVskRmirRvalfsG 68 
                 ++iP vV +R + R++l+ G
  KKY14897.1 187 TTIPGVV-HRYVGRITLTLG 205
                 3377766.578888887776 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.08
     DUF3464   9 epkkkrkkkpkkkkkskkakkeek 32 
                 ++++++kkk+kkkkk+kk+kk++k
  KKY14897.1 247 QQQQQKKKKKKKKKKKKKKKKKKK 270
                 443333333222222222222222 PP

>> AP3D1  AP-3 complex subunit delta-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       9.4   1.1e+04      37      48 ..     156     169 ..     140     187 .. 0.42
   2 ?    9.2  16.7    0.0011       1.3      79     106 ..     248     272 ..     240     290 .. 0.48

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 9.4
       AP3D1  37 saqns..eeveeip 48 
                 ++ +s  ++++ i 
  KKY14897.1 156 NSTTSttSTTTPIK 169
                 22222112222222 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0011
       AP3D1  79 kkkakeekkkkkkkkkkkkkkkkkkkkk 106
                 ++++k++kkkkkkkkkkkkkkkk   kk
  KKY14897.1 248 QQQQKKKKKKKKKKKKKKKKKKK---KK 272
                 22222112222222222222222...21 PP

>> Topoisom_I_N  Eukaryotic DNA topoisomerase I, DNA binding fragment
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  12.6     0.009        11      94     137 ..     249     292 ..     244     294 .] 0.76

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.009
                   HHHHHHHTT-----HHHHHHHHHHHHHHHHEEEETTEEEEEE-- CS
  Topoisom_I_N  94 ekekekkkaltkeekkklkeekekleekygyalldgrkekvgnf 137
                   +++k+kkk+++k++kkk+k++k+k+++++ y +   rk++ g +
    KKY14897.1 249 QQQKKKKKKKKKKKKKKKKKKKKKISSHFIYLISQARKKEQGTY 292
                   45666666777778888889999999999999999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3853  (0.214903); expected 358.6 (0.02)
Passed bias filter:                     1440  (0.0803168); expected 358.6 (0.02)
Passed Vit filter:                       280  (0.0156172); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.81u 0.37s 00:00:01.18 Elapsed: 00:00:00.55
# Mc/sec: 1611.28
//
Query:       KKY14898.1  [L=741]
Description: putative succinate-semialdehyde dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.2e-149  497.0   0.0     5e-149  496.7   0.0    1.1  1  Aldedh        Aldehyde dehydrogenase family
    4.8e-51  173.6   0.0    8.9e-51  172.7   0.0    1.4  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    8.7e-42  142.8   0.0    1.5e-41  142.0   0.0    1.4  1  adh_short     short chain dehydrogenase
    2.5e-05   24.3   0.1    5.6e-05   23.1   0.1    1.5  1  KR            KR domain
  ------ inclusion threshold ------
       0.11   12.7   0.6          1    9.6   0.0    2.5  3  TAXi_N        Xylanase inhibitor N-terminal
       0.16   11.4   0.0       0.55    9.7   0.0    1.8  2  DUF1487       Protein of unknown function (DUF1487)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  496.7   0.0  1.7e-152    5e-149       1     461 [.     260     730 ..     260     731 .. 0.97

  Alignments for each domain:
  == domain 1  score: 496.7 bits;  conditional E-value: 1.7e-152
                 EET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHH CS
      Aldedh   1 wveses.etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlr 98 
                 w+ ++s +t+evi+P ++e++a++p+++aedvd+a ++A+ af++++k+++++Ra++L  +++l+ + k++la+++t etGkplaea+ae+++a +++ 
  KKY14898.1 260 WIGASSgRTFEVIDPGSEEIWASCPDCDAEDVDSAAQSAQTAFETYSKVSPRKRAQLLISWHNLILAAKDDLAKILTYETGKPLAEASAELDYANSFVW 358
                 677777577****************************************************************************************** PP

                 HHHHHHHHHSEEEEEEC.TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SS...T CS
      Aldedh  99 yyaelaeklegevlpss.egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgs...g 193
                 ++a+++e+++g+  ++s ++++al++++PlGv +a++PWNfP +++++k+ +alaaG+t+++KP++etp+++l+la+l+ +ag+P+g+lnv+t+s    
  KKY14898.1 359 WFAGEVERIQGSLYKCSiPNRRALITKQPLGVSVALVPWNFPTAMVLRKAGAALAAGCTMIIKPSPETPITTLALAHLATKAGFPPGALNVLTTSldnT 457
                 *************99966**************************************************************************9874446 PP

                 CCHHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHH CS
      Aldedh 194 sevgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklvea 292
                   ++eal+ hp v+kv+ftGst+vg+ ia  +a+nlk+ tlElGG+ p+i+++daDld+a++++++  +++aGQ Ci+a+r+lvqe+iy++f++k++e 
  KKY14898.1 458 PPLSEALCLHPLVKKVTFTGSTRVGKIIAGLCARNLKKSTLELGGNCPFIIFNDADLDHALNQLMALKWRHAGQACITANRVLVQEEIYEKFTNKCIEW 556
                 778************************************************************************************************ PP

                 H.HT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT..E.SB-SSSTTEE--EEEES..-TTTSHHHHS---SSEEEEEEESSHHHH CS
      Aldedh 293 a.kklkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGge..reeaglekgyfvePtvlan..vtpdmriaqeEiFGPVlsvikfkdeeea 386
                 + ++lk+g++  e t++GP++++++l+k ++++++a  +ga++ lG+e   +++ ++kgyf  Pt+l+   +++d++i+q+E+F P+l + +f +e +a
  KKY14898.1 557 TkENLKIGHGASEGTTLGPVTTPQSLKKAKELIDDALHHGAQIHLGSEfyPSSQLPQKGYFHPPTILTYlpLSSDSQIIQTECFTPILLLQSFTSESQA 655
                 96789********************************************988999************98335699************************ PP

                 HHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSH.HHHHHHTEEEEE CS
      Aldedh 387 ieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGregg.kegleeytevkt 461
                 +e aN+t+ GLa++vft++++r+ r+ e l+aG+v++N+ + +aae+ pfgG+k+Sg+G+e+g ke++eey+ vkt
  KKY14898.1 656 LESANNTPLGLASYVFTSNVNRLWRMFEGLQAGMVGLNTGNSSAAET-PFGGWKESGWGKESGiKEAVEEYLAVKT 730
                 *********************************************99.*************999*********997 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.7   0.0     3e-54   8.9e-51       1     227 [.      14     242 ..      14     245 .. 0.94

  Alignments for each domain:
  == domain 1  score: 172.7 bits;  conditional E-value: 3e-54
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdr 97 
                   G asg G++iA ++  eG++vv++dl+ ++     ++ae+l+ +++++DVt+ e++++l + + + +g+lDi+vnnag + k ++ ++++++++fd 
    KKY14898.1  14 GGASGFGQGIATKFVTEGCSVVIADLSVQN---GSKVAESLSCKFCQTDVTKSEDWTKLLQSTLDWHGRLDIVVNNAGATYK-NKATETVTDDDFDL 106
                   6689*************************9...899999*******************************************.8888889******* PP

                   HHHHHTHHHHHHHHHHHHHCTSC...CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT...HHHH CS
  adh_short_C2  98 aldvnlyslfllakaalplmkeg...gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg...fdel 188
                    ++vn++s++l +  +lp++ e+   g  + ++s+++ r  p+ ++y+a+Kaa+++ t+++Ave+gpk+iR N+ sp +  T ++  + g   ++e 
    KKY14898.1 107 CFNVNVKSVHLSTSTILPYFLEKdiaGCFLQVASTAGIRPRPGLTWYNASKAAVINATKTMAVEYGPKKIRFNSLSPVIGSTGLTHLFLGkpdTPEN 203
                   ******************55555599*****************************************************999997755443338889 PP

                   HHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEE CS
  adh_short_C2 189 leelearaplgrlgtpeevaeaalfLasdeasyitGqtl 227
                   ++++ +  p+gr  tp +va+a+++Lasdea++itG +l
    KKY14898.1 204 RAAFLSTVPIGRGSTPADVANACCYLASDEAEFITGVNL 242
                   99**********************************987 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.0   0.0   5.1e-45   1.5e-41       1     187 [.       8     191 ..       8     195 .. 0.96

  Alignments for each domain:
  == domain 1  score: 142.0 bits;  conditional E-value: 5.1e-45
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfselse 98 
                 kv+++tG++sG+G+ ia ++++eG++vv++d s ++  +va++l        ++q+Dvt++e++ +l++   + +g+ld++vnNAG   ++++++ +++
  KKY14898.1   8 KVAIITGGASGFGQGIATKFVTEGCSVVIADLSVQNGSKVAESLS-----CKFCQTDVTKSEDWTKLLQSTLDWHGRLDIVVNNAGAtYKNKATETVTD 101
                 89*****************************************99.....78***********************************778888888999 PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHH CS
   adh_short  99 eewervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdma 187
                 ++++ +++vN+++v l t ++lp++l k  +G   +v+S+ag  p +g++ Y AsKaav+  t+++a e+ p++ir n++ P + +T+++
  KKY14898.1 102 DDFDLCFNVNVKSVHLSTSTILPYFLeKDIAGCFLQVASTAGIRPRPGLTWYNASKAAVINATKTMAVEYGPKKIRFNSLSPVIGSTGLT 191
                 99**********************997999****************************************************99888876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   1.9e-08   5.6e-05       4     154 ..      11     158 ..       9     169 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.9e-08
                 EEETTTSHHHHHHHHHHHHHHS-EEE.EE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE-----.----TTT- CS
          KR   4 litGGlGgLGlelarwlaekgarhlv.llsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvl.rdklleem 100
                 +itGG+ g+G+ +a+  + +g + ++  ls +    + sk           ++++++ Dv+++++ ++ll++  + ++++  v++ Ag++ ++k+ e++
  KKY14898.1  11 IITGGASGFGQGIATKFVTEGCSVVIaDLSVQ----NGSK-VA-----ESLSCKFCQTDVTKSEDWTKLLQSTLDWHGRLDIVVNNAGATyKNKATETV 99 
                 8*******************965444045555....2322.22.....3456799********************************986257788999 PP

                 -HHHHHHHHTTTTHH.....HHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHH CS
          KR 101 taedleqvlapKvkG.....awnLhelledesldffvlfSSiagllgsagqanYaaaNa 154
                 t++d++ +++  vk      +  L  +le++    f+ ++S ag+   +g + Y a  a
  KKY14898.1 100 TDDDFDLCFNVNVKSvhlstSTILPYFLEKDIAGCFLQVASTAGIRPRPGLTWYNASKA 158
                 ******99998887611111456777777788899************999999998754 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00034         1       7      55 ..     261     309 ..     255     328 .. 0.74
   2 ?   -3.0   0.0       2.4   7.2e+03       4      26 ..     336     358 ..     334     361 .. 0.89
   3 ?    0.0   0.1      0.29   8.7e+02      98     145 ..     651     699 ..     646     702 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00034
      TAXi_N   7 iGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavp 55 
                 iG    +++ v+D Gs+ +W  C  c+a+   +     +++ +ty++v+
  KKY14898.1 261 IGASSGRTFEVIDPGSEEIWASCPDCDAEDVDSAAQSAQTAFETYSKVS 309
                 67777788899************77777444444444455555555555 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.4
      TAXi_N   4 sisiGtppqplklvvDtGsdltW 26 
                 + + G+p  + ++ +D + +++W
  KKY14898.1 336 TYETGKPLAEASAELDYANSFVW 358
                 6789******************9 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.29
      TAXi_N  98 tdtltlsstdgksvkvpnlvfGCgksnlgglaag.adGilGLGrgklSl 145
                 +++ +l+s++++   +++ vf+   + l ++++g  +G++GL  g+ S 
  KKY14898.1 651 SESQALESANNTPLGLASYVFTSNVNRLWRMFEGlQAGMVGLNTGNSSA 699
                 5666666666677777777777776556566665589*******99985 PP

>> DUF1487  Protein of unknown function (DUF1487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.89   2.7e+03      88     111 ..     173     197 ..     156     201 .. 0.69
   2 ?    9.7   0.0   0.00018      0.55       8      52 ..     506     552 ..     502     562 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.89
     DUF1487  88 ksesakakasPilVl.dvthsflgd 111
                  ++ + ++ sP++   ++th flg+
  KKY14898.1 173 PKKIRFNSLSPVIGStGLTHLFLGK 197
                 5566777889**98669******97 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00018
     DUF1487   8 mvifedgDlnsalealves..lkePfaegavatvlveesirdefver 52 
                 ++if+d+Dl++al++l+     +   a+ +   vlv+e+i ++f ++
  KKY14898.1 506 FIIFNDADLDHALNQLMALkwRHAGQACITANRVLVQEEIYEKFTNK 552
                 69*************986411456667777778***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 4469.58
//
Query:       KKY14899.1  [L=329]
Description: hypothetical protein UCRPC4_g06622 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-25   89.0   0.7    4.9e-25   88.4   0.7    1.3  1  Med4        Vitamin-D-receptor interacting Mediator subunit 4
  ------ inclusion threshold ------
       0.09   12.8   0.4       0.09   12.8   0.4    2.5  2  TPR_MLP1_2  TPR/MLP1/MLP2-like protein


Domain annotation for each model (and alignments):
>> Med4  Vitamin-D-receptor interacting Mediator subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.7   5.4e-29   4.9e-25       2     181 ..      34     275 ..      33     300 .. 0.82

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 5.4e-29
        Med4   2 klaekLlaaddelskslkeleehqknearilqLraeveslDekikeivksLkeyekeLkavp......dqenskld..tasiklaekrevdseeLLdYA 92 
                 ++ + Ll+addel+++l+ l +hq+n+aril Lrae+ +l+ek+k++v++ +e +k +          d +++  d  ++++ ++  r + ++ LL +A
  KKY14899.1  34 AATQSLLSADDELTSALELLATHQQNYARILCLRAEATELEEKVKSLVRKANEFRKGVVIIApglldeDSDDE--DegARDQRSESYRDIPYSSLLTFA 130
                 67799**************************************************987654447764434444..25599999999************* PP

        Med4  93 rrISkytsv.......................................................ppaepkasvtkeptswlde...mlrgaafrPwPtE 133
                 r I ky++                                                        + +e +++  + ++ wl++      +   + +P+ 
  KKY14899.1 131 RGIGKYNAEaakeaeqheqrlriestqkssgqdatgsraevvvngistttngvksdlqpltaeaKDPEAASKILERAAGWLNQtseERKNLGALSFPSG 229
                 **************************************************************8755566666668999***88887555666778**** PP

        Med4 134 deiRmGlLaalqlaaaegeerpgedpeeeeerk..seeaegrreeeerak 181
                 +++R+G L++lq  ++e  + ++ d + e e +  ++ aegr    + a+
  KKY14899.1 230 ERLRRGILGQLQAIQEEHGGGEKGDLAVEREIErmIAIAEGR----QVAP 275
                 ************999977777766665555544004444543....2222 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4     1e-05      0.09      19      69 ..      34      84 ..      18      91 .. 0.86
   2 ?   -2.2   2.8      0.45     4e+03      34      34 ..     158     158 ..     129     221 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1e-05
  TPR_MLP1_2 19 eaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnel 69
                +a++ l ++ ++l++  e++++ qq+Y+r l + ae+++  +++++ + ++
  KKY14899.1 34 AATQSLLSADDELTSALELLATHQQNYARILCLRAEATELEEKVKSLVRKA 84
                6778889999***************************99888888766665 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.45
  TPR_MLP1_2  34 q 34 
                 +
  KKY14899.1 158 K 158
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       931  (0.051927); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.35s 00:00:01.03 Elapsed: 00:00:00.56
# Mc/sec: 1777.90
//
Query:       KKY14900.1  [L=452]
Description: putative protein phosphatase 2c [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-35  121.4   0.1    2.7e-29  102.6   0.0    2.2  2  PP2C         Protein phosphatase 2C
      0.003   17.2   0.0     0.0081   15.8   0.0    1.7  2  PP2C_2       Protein phosphatase 2C
  ------ inclusion threshold ------
       0.14   12.3   0.6       0.68   10.1   0.1    2.2  2  Orthopox_F8  Orthopoxvirus F8 protein


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   6.1e-07    0.0037      28      70 ..       7      49 ..       1      97 [. 0.68
   2 !  102.6   0.0   4.6e-33   2.7e-29      62     253 ..     206     404 ..     164     409 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.1e-07
                TCCCCCCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHCHTTH CS
        PP2C 28 ssgkssvsffavfdghggseaakyarehleeilksqksfeele 70
                  g+ +v +f+vfdghgg+e++ y  e+l+e +++ +   el+
  KKY14900.1  7 LYGDPQVFYFGVFDGHGGEECSGYLTERLHEYIEKTSREFELQ 49
                56778899**********************8777654443333 PP

  == domain 2  score: 102.6 bits;  conditional E-value: 4.6e-33
                 HHHHCHTTHHHHHHHHHHHHHHHHHHHHHHHHHC.HCCT-EEEEEEEEEETTE............EEEEEESS-EEEEEETTEEE.EECS---STTSHH CS
        PP2C  62 sqksfeelekleqalrksfladtdeelksskant.epsksGstavvalirgtk............lyvAnvGDSravLcrkgnak.keltedHkpsded 146
                 + ++ ++++k ++a+++s    ++++lk+++    +  k Gst +vali+  +            + +A+vGD+r+++c+  +     lt+ H+ps++ 
  KKY14900.1 206 KEDEGRDMAKADRAINDSDILGQASRLKDQIG-GpKRFKGGSTCSVALISTPTpspfwnpssrssMLIAHVGDTRILVCSTATGNaIPLTTNHHPSSPV 303
                 33333444499999999999944555555333.23679************9999*************************97655445************ PP

                 HHHHHHHTT--EEE...CCEEETTTBSBSB-EE-GGGTCCCCCCSTSB---EEEEEEE-TT.EEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHTHHHHH CS
        PP2C 147 EreRIeeaggsvsn...gegrvngsLavsRalGDlelkpketeeqlvsaePdvtsvkltee.defliLacdGlwdvlsdqeavdlvrdelekkkspeev 241
                 E +R++++  ++     ge r  g  a++Ra+GD  +k+       vsaeP++  v+l      fl+L++dG+   l+dqe+vd+v++  +    p+++
  KKY14900.1 304 EGNRLRRYAATFVTdsfGEERMSGL-ANTRAFGDIASKR-----IGVSAEPEIKRVELGAAeYAFLVLVSDGVSGTLNDQEIVDIVKEAKT----PDQA 392
                 ******9888777668899999987.************9.....79***************99************************9888....9*** PP

                 HHHHHHHHHHCC CS
        PP2C 242 aeelvdeaiarg 253
                 a+++v++a +  
  KKY14900.1 393 ARDVVNFATEVS 404
                 ******998765 PP

>> PP2C_2  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.45   2.7e+03      46      64 ..      31      49 ..      11      98 .. 0.49
   2 !   15.8   0.0   1.4e-06    0.0081     107     183 ..     268     378 ..     197     413 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.45
      PP2C_2 46 aveavvealaelleseeee 64
                ++e + e+++++ ++ e +
  KKY14900.1 31 LTERLHEYIEKTSREFELQ 49
                5555555555554433333 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.4e-06
      PP2C_2 107 deivalqiGDGai.vvrdrdgevqllgepds..........geyanq..ttfltsedaeeel.......................rirrlk..ledgda 167
                   ++++++GD+ i v+  ++g+  +l+++++          +        tf+t++  ee++                       +i+r++  + ++  
  KKY14900.1 268 SSMLIAHVGDTRIlVCSTATGNAIPLTTNHHpsspvegnrlR----RyaATFVTDSFGEERMsglantrafgdiaskrigvsaepEIKRVElgAAEYAF 362
                 45889********66666889999999987755555543333....14568999997677779**********************888888767889** PP

      PP2C_2 168 lllmTDGlanslrdee 183
                 l+l++DG++  l d+e
  KKY14900.1 363 LVLVSDGVSGTLNDQE 378
                 *********7775544 PP

>> Orthopox_F8  Orthopoxvirus F8 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00011      0.68       3      33 ..      95     125 ..      93     138 .. 0.92
   2 ?   -1.0   0.0      0.33     2e+03      19      49 ..     296     326 ..     294     331 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00011
  Orthopox_F8   3 Gskrkhesrrlqqeqeqlrprtppsyeeiak 33 
                  Gs r   s+  qqe  q  p  pp  +e+ k
   KKY14900.1  95 GSSRNRTSKPSQQEYHQSYPGDPPLVQEVNK 125
                  999***********************99987 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.33
  Orthopox_F8  19 qlrprtppsyeeiakyGhsfnvkrftneemc 49 
                  ++ p +p   + + +y  +f    f +e m 
   KKY14900.1 296 NHHPSSPVEGNRLRRYAATFVTDSFGEERMS 326
                  57889999999999***********999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.50
# Mc/sec: 2721.77
//
Query:       KKY14901.1  [L=303]
Description: putative cdp-diacylglycerol-inositol 3-phosphatidyltransferase pis [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-12   47.5   0.4    2.3e-12   47.5   0.4    2.1  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
  ------ inclusion threshold ------
      0.037   13.9   0.2      0.066   13.0   0.2    1.5  1  PqiA             Paraquat-inducible protein A
        1.2    9.6   6.5        2.3    8.7   0.7    2.5  2  RexB             Membrane-anchored ion channel, Abi component


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.4   3.9e-16   2.3e-12       2      66 .]      50     112 ..      49     112 .. 0.83
   2 ?   -2.1   1.4       1.2   6.9e+03      34      34 ..     155     155 ..     115     208 .. 0.51

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 3.9e-16
                      -HHHHHHHHHHHHHHHHHGGGS-H....HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf   2 lPnaiTllrlllsvlailllltyyp..lvlailllliasltDalDGklARrlnqvstlGkllDslaD 66 
                      +Pn+i + r++l+++     l+y+p    ++ ll+ +++l+DalDG  AR++ q++++G++lD + D
       KKY14901.1  50 IPNIIGYGRVVLAIV----SLYYMPlhPRTCSLLYSVSCLLDALDGIAARKYDQSTQFGAVLDMVTD 112
                      8**********9444....445666445777778889*****************777*******998 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
                      H CS
  CDP-OH_P_transf  34 l 34 
                      +
       KKY14901.1 155 M 155
                      0 PP

>> PqiA  Paraquat-inducible protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   1.1e-05     0.066      10      86 ..      75     150 ..      44     174 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
        PqiA  10 aalillipAnllpimslsllgstseatllsgvlalweegswlvAllvflasilvPllklllllllllslklgrrprg 86 
                 ++ +l+ +++ll  +   ++ +  ++t +++vl ++++    +A+l++++s ++P++ ++   l+ l l+ + +++ 
  KKY14901.1  75 TCSLLYSVSCLLDALDGIAARKYDQSTQFGAVLDMVTD-RCTTACLIVFLSSAFPTFAIIFQGLISLDLASHYMHMY 150
                 67789999999999999999999*************98.588999999999****************9976655443 PP

>> RexB  Membrane-anchored ion channel, Abi component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.7     0.018   1.1e+02      77     117 ..     116     158 ..     106     181 .. 0.78
   2 ?    8.7   0.7   0.00039       2.3      86     113 ..     185     212 ..     173     221 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.018
        RexB  77 tsvvivyalsfvelgalffcgllllssisgym..iptiaigia 117
                 t+ +iv+  s     a++f gl+ l   s ym    t+++g +
  KKY14901.1 116 TACLIVFLSSAFPTFAIIFQGLISLDLASHYMhmYATLSMGGS 158
                 778899999999999*******999999998721456666655 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00039
        RexB  86 sfvelgalffcgllllssisgymiptia 113
                  f  l  lff gl lls  s  ++pt+ 
  KKY14901.1 185 IFCALNELFFIGLYLLSFSSPLLVPTLV 212
                 588999*******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.53
# Mc/sec: 1722.40
//
Query:       KKY14902.1  [L=455]
Description: hypothetical protein UCRPC4_g06625 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3031.04
//
Query:       KKY14903.1  [L=752]
Description: putative alpha methylacylracemase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.5e-39  134.1   0.2    2.2e-38  132.3   0.3    1.8  2  CoA_transf_3  CoA-transferase family III
    2.8e-08   33.7   0.0    4.5e-08   33.1   0.0    1.3  1  DJ-1_PfpI     DJ-1/PfpI family


Domain annotation for each model (and alignments):
>> CoA_transf_3  CoA-transferase family III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.13   1.2e+03     238     322 ..     338     412 ..     231     445 .. 0.56
   2 !  132.3   0.3   2.5e-42   2.2e-38       1     199 [.     448     642 ..     448     665 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.13
  CoA_transf_3 238 dgwvaiaaatdkqwaalckalgrpelaedprfatnasrlenraeldaelaewlaertaaewlellaaagvpaapvntleevlddp 322
                   d  v+  + +  + + +++ +g +           +  l+ + +  + +++ +++ + +e++++  ++g++   + ++e   ++p
    KKY14903.1 338 DPKVWYQLHGSLDATPVLQSMGIDR----------DLNLDSASKAYDYIRQHVEQWDPEELEAHNVKHGLCGNICYSPEGWRKSP 412
                   4433333333333333333333322..........22223334455566666666666666666666666666666666666654 PP

  == domain 2  score: 132.3 bits;  conditional E-value: 2.5e-42
  CoA_transf_3   1 LaGvrVldlsqvlaGplatslLAdlGAeVIkvEppkkgDpaRkvgpseekgesayflavnrnKrsvalDlkseegrellkrLvakADVvieNfrpgv 97 
                   LaG++Vl++ +++aGp+++ +LA +GA+VI+v  +     +R +        +++ la+n +Kr + lDl+++++ + l++Lv+ ADV+i+ fr+g 
    KKY14903.1 448 LAGIKVLEMVRIIAGPTIGATLASFGADVIRVNCS----GLRDL--------NVLQLALNAGKRAIDLDLTKKDDLNRLQELVEGADVFIDGFRAGS 532
                   89*******************************99....78866........8899***************************************** PP

  CoA_transf_3  98 lerlglgyeelr....ainPrLiyasvsgyGqsGpkakrpgyDlvaqaasGlmsltge....pdgpPvkvgvplgDivtgllaavailaallarert 186
                   l++ glg ++l     ++n  ++y+  + yG +Gp  krpg+++++ aasG  +++g     ++g+   +  p+ D++tg+++a+++l+a++ r + 
    KKY14903.1 533 LAAKGLGLDRLLematKRNKGIVYVDENCYGPDGPFTKRPGWQQIGDAASGYSYVMGRsyglEEGKSILPPLPISDMTTGVVGALGVLMAIRDRAQC 629
                   *******99986222269*************************************855445599999****************************99 PP

  CoA_transf_3 187 GkGqvidvsllea 199
                   G    +  sl++a
    KKY14903.1 630 GGSYLVVSSLVAA 642
                   9888888888776 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   5.1e-12   4.5e-08       4     127 ..      18     161 ..      15     198 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 5.1e-12
                 EEEEETTBEHHHHHHHHHHHHH.....TTEEEEEEESSTSEEEETTS..........EEEE-SEEGGGCTCC..G-SEEEE--BHHHHHHHHTSH..HH CS
   DJ-1_PfpI   4 lvlladgvedvElivpvdvlkr.....agikvdvvsvdkeevkgsrG..........lkvtvdaslddvkaa..eyDalvlpGGragperlrene..kv 83 
                 +++l+ g++ +++  p+d l+       ++++++ s++ ++v +++           +++++++++ ++  +  e D++++pGG+   +r+ +++    
  KKY14903.1  18 ALVLFPGFQLLDACGPLDLLNTlaeteHELSLSIWSTTLDPVPTKHPsvfdenprfsESIKPTHTFAQILESqvETDVVIIPGGTG--TRIPKDSilPT 114
                 6788999999999999999994444446666666677755554444444444566778899999999886654789********99..77777774567 PP

                 HHHHHHHHHTT...-EEEEETTTHHHHHHTTTTTTSEE--SGGGHHH CS
   DJ-1_PfpI  84 velvkefaekg...klvaaICagpqlLaaagvlkgrrvTsypavkdk 127
                 +e++k+ +++g     +++IC+g  lLa++g+l+  ++T+++   d 
  KKY14903.1 115 LEFLKSYLSSGylkHSIFTICTGSRLLAQTGYLDTLKATTNKRAFDV 161
                 99******98722256************************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 4914.70
//
Query:       KKY14904.1  [L=156]
Description: hypothetical protein UCRPC4_g06593 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.011   15.3   0.3      0.019   14.6   0.1    1.4  2  SLATT_4   SMODS and SLOG-associating 2TM effector domain fami


Domain annotation for each model (and alignments):
>> SLATT_4  SMODS and SLOG-associating 2TM effector domain family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   1.1e-06     0.019      90     138 ..      14      62 ..       9      69 .. 0.87
   2 ?   -3.4   0.0      0.35   6.3e+03     146     149 ..     115     118 ..     103     136 .. 0.52

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.1e-06
     SLATT_4  90 raaAnkLwkiRekylsLltdlksgalsleearkkrDeLqeelsevYsga 138
                 ++aA+  w iR ky + ++d  ++a + e++++   + +++l ++Y+ a
  KKY14904.1  14 KDAAEAAWRIRQKYDNFVADAAHDAADAEDLADALRKHTAQLVNLYKIA 62 
                 799********************99999999988888888888888866 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.35
     SLATT_4 146 YkkA 149
                 Y++A
  KKY14904.1 115 YARA 118
                 2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 956.45
//
Query:       KKY14905.1  [L=1038]
Description: putative chromo domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-12   45.4   1.0      2e-11   43.6   1.0    2.0  1  Chromo    Chromo (CHRromatin Organisation MOdifier) domain


Domain annotation for each model (and alignments):
>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   1.0   1.1e-15     2e-11       1      43 [.      24      66 ..      24      78 .. 0.82

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 1.1e-15
                EEEEEEEEEEEETTEECEEEEEEETTSTGGGTEEEE.GGGCSSH CS
      Chromo  1 yeVerIidhrtdkdgleleYlVKWkglpysentWEp.eenlekc 43
                y+Ve+I+++++d+dg+   YlVKW g+p++ +tWEp e+ +++ 
  KKY14905.1 24 YIVEQILSEKFDDDGQ-RLYLVKWLGYPDERATWEPsESFCDDT 66
                89**************.*******************55566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1038 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       934  (0.0520944); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.52
# Mc/sec: 5980.46
//
Query:       KKY14906.1  [L=212]
Description: putative ras gtpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-63  212.4   0.2    3.3e-63  212.1   0.2    1.1  1  Ras          Ras family
    2.4e-35  121.3   0.2    3.5e-35  120.8   0.2    1.2  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    3.8e-13   49.3   0.1      5e-13   48.9   0.1    1.1  1  Arf          ADP-ribosylation factor family
    8.9e-08   32.2   0.1    1.4e-07   31.6   0.1    1.3  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0001   22.3   0.1      0.016   15.1   0.0    2.2  2  RsgA_GTPase  RsgA GTPase
    0.00042   19.9   0.1     0.0017   18.0   0.1    1.9  1  GTP_EFTU     Elongation factor Tu GTP binding domain
     0.0006   19.2   0.1    0.00095   18.6   0.1    1.4  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
     0.0031   17.8   0.0       0.02   15.2   0.0    2.0  1  AAA_22       AAA domain
  ------ inclusion threshold ------
      0.015   15.3   0.1      0.048   13.7   0.1    1.9  1  AAA_14       AAA domain
      0.016   14.6   0.0      0.025   14.0   0.0    1.3  1  SRPRB        Signal recognition particle receptor beta subuni
      0.021   15.2   0.1      0.033   14.6   0.1    1.5  1  AAA_16       AAA ATPase domain
      0.023   14.4   0.1      0.058   13.1   0.1    1.8  1  AAA_24       AAA domain
      0.026   15.1   0.1      0.039   14.5   0.1    1.6  1  ABC_tran     ABC transporter
       0.05   13.0   0.0       0.17   11.3   0.0    1.8  2  TniB         Bacterial TniB protein
       0.11   12.0   0.0       0.21   11.1   0.0    1.4  1  AAA_7        P-loop containing dynein motor region
       0.11   12.0   0.0       0.25   10.8   0.0    1.5  2  FeoB_N       Ferrous iron transport protein B
       0.12   12.5   0.1        2.4    8.3   0.0    2.2  2  SpoIIID      Stage III sporulation protein D
       0.15   11.8   0.8       0.22   11.3   0.6    1.5  1  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.1   0.2   3.3e-66   3.3e-63       1     161 [.      11     171 ..      11     172 .. 0.99

  Alignments for each domain:
  == domain 1  score: 212.1 bits;  conditional E-value: 3.3e-66
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 K+vl+Gds+vGK++ll rf++++F+ +++sTigv+f t++i+vd k++k +iwDTAGqe++++++++yyr+a g+llvydi+++++++nv++w++e+++
  KKY14906.1  11 KVVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQVDAKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHQTYDNVTRWLKELRD 109
                 9************************************************************************************************** PP

                 HSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                 +a++n++i+LvGnK+Dl++ rav tee++++a+e++l f+etSA ++ nve af+++l+ei+
  KKY14906.1 110 HADSNIVIMLVGNKSDLRHLRAVPTEEAKQFASENNLSFIETSALDASNVELAFQNILTEIY 171
                 **********************************************************9986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.2   3.5e-38   3.5e-35       1     119 [.      11     125 ..      11     126 .. 0.90

  Alignments for each domain:
  == domain 1  score: 120.8 bits;  conditional E-value: 3.5e-38
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 Kvvl+GdsgvGK+ ll+rf++++f+ ++kstigv+f+t+++ +++        k++k +iWDtaGqer+r++++ y+r+a  a+lvyd    ++++n+ 
  KKY14906.1  11 KVVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSI-QVD-------AKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDiskHQTYDNVT 101
                 9************************************9986.333.......36899*******************************76555679*** PP

                 HHHHHHHHHCSSS.-EEEEEE-TT CS
         Roc  97 eWlkelkkvagks.pvilvgnkiD 119
                 +Wlkel+++a+++ +++lvgnk D
  KKY14906.1 102 RWLKELRDHADSNiVIMLVGNKSD 125
                 *********997626679****99 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.1     5e-16     5e-13      15     146 ..      10     147 ..       4     170 .. 0.80

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 5e-16
                 EEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEE..EEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHC CS
         Arf  15 lrilllGLDnaGKtTilkklkleelvt.tvPTigfnve..elei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkall 108
                 ++++l+G  + GK+ +l +++ +e++   + Tig +    ++++  k++k ++wD  Gqe+ R + + Y++   + + v D ++++  ++  + Lk+l 
  KKY14906.1  10 FKVVLIGDSGVGKSNLLSRFTRNEFNLdSKSTIGVEFAtrSIQVdaKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHQTYDNVTRWLKELR 108
                 699*********************98548899986544114443449**************************************************87 PP

                 TSGCCTTSEEEEEEE-TTSTT..SS-HHHHHHHTTGGGSS CS
         Arf 109 eeeelkevallvlaNKqDlpe..alseeelrellgleelk 146
                 ++ + +++++++++NK Dl++  a+ +ee ++  + ++l+
  KKY14906.1 109 DHAD-SNIVIMLVGNKSDLRHlrAVPTEEAKQFASENNLS 147
                 6665.67777888*****9853377777777777766665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.1   1.4e-10   1.4e-07       1     110 [.      11     117 ..      11     123 .. 0.67

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.4e-10
                 EEEEEESTTSSHHHHHHHHHTS.....TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT.TTCSHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.....kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdas.eeklkpl 93 
                 +v+++G + vGKS L+++ t++        +    ++Tr i+         + +++Dt+G  e   + + ++ a+ +   a  +llv d+s +++++++
  KKY14906.1  11 KVVLIGDSGVGKSNLLSRFTRNefnldSKSTIGVEFATRSIQVDAK---TIKAQIWDTAG-QE---RYRAITSAYYR--GAVGALLVYDISkHQTYDNV 100
                 699*****************97443322233445577777777644...4678*******.54...34467777764..58899999999953467777 PP

                 HHHHHHHHHHTTSEEEE CS
    MMR_HSR1  94 deeleelleeakkplil 110
                  + l+el+++a+ ++++
  KKY14906.1 101 TRWLKELRDHADSNIVI 117
                 77777776555555433 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.6e-05     0.016     102     122 ..      12      32 ..       9      74 .. 0.78
   2 ?    5.3   0.1     0.016        16      33      91 ..      98     160 ..      82     175 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.6e-05
                  EEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe 122
                  +vl+G SGvGKS L+ +++ +
   KKY14906.1  12 VVLIGDSGVGKSNLLSRFTRN 32 
                  69*************998876 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.016
                  HHHHHHHHHH...HHTT-EEEEEEE-GGG--HHH.HHHHHHHHHHHTTSEEEE--TTTHTTHH CS
  RsgA_GTPase  33 nlldrfLvla...eekgiepvivlnKiDlleeee.eleelkeelealgyevllvsaktkegle 91 
                  + ++r L ++    +++i +++v nK Dl + +   +ee k+  ++ +++++ +sa + +++e
   KKY14906.1  98 DNVTRWLKELrdhADSNIVIMLVGNKSDLRHLRAvPTEEAKQFASENNLSFIETSALDASNVE 160
                  445555554411156788899999*****9988867888889999999999999998887776 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   1.7e-06    0.0017      53     186 ..      41     164 ..       9     180 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.7e-06
                 TSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB..STHHHHHHHHH..HHHTTTEEEEEEESCGSTHHHHHHHHHHHH CS
    GTP_EFTU  53 giTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG..vepqteevlrl..alkegvpiivfiNKmDrlkaelkeiveevk 147
                  i ++ a+ s++ + k+ + ++ Dt G + +   +++ +r + ga+lv d+++     + t+ + +l    + ++ i+++ NK D     l+ +++e  
  KKY14906.1  41 TIGVEFATRSIQVDAKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHqtYDNVTRWLKELrdHADSNIVIMLVGNKSDLR--HLRAVPTEEA 137
                 455566666666679999*********************************976333333333322200233455577788****85..5667777777 PP

                 HHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHH CS
    GTP_EFTU 148 qklsrkeeklekygekgekevpvvfgSalkgegvktlle 186
                 +++           +++ ++ +++ +Sal++ +v+  ++
  KKY14906.1 138 KQF-----------ASE-NNLSFIETSALDASNVELAFQ 164
                 777...........222.357888888888887763333 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   9.6e-07   0.00095       1     125 [.      11     128 ..      11     176 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 9.6e-07
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardt.lrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 kv+L+G sg GK+ + s    n    d   ++g+   ++  +v   + ++ ++wD  Gqe++ + +    +++    vg+l+ V D+++++   + ++ 
  KKY14906.1  11 KVVLIGDSGVGKSNLLSRFTRNEFNLDSkSTIGVEFATRSIQV-DAKTIKAQIWDTAGQERYRAIT----SAYYRGAVGALL-VYDISKHQ---TYDNV 100
                 89****************9998877776145777777777777.47899***********998876....666777899987.99**9554...44444 PP

   Gtr1_RagA  99 keilealrqyspeakvfvli.hKmDliq 125
                 ++ l++lr++     v +l+ +K Dl +
  KKY14906.1 101 TRWLKELRDHADSNIVIMLVgNKSDLRH 128
                 5555666655554444444436777653 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     2e-05      0.02       9     133 ..      13     126 ..      12     130 .. 0.50

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrs.e 106
                 v++G sG+GK+ ll r++++       +  +++++ v+ +  +  +  ++ +  ++ +     ++ + e ++a++ a  + av +ll+ D   h  + +
  KKY14906.1  13 VLIGDSGVGKSNLLSRFTRNEF-----NLDSKSTIGVEFATRS-IQVDAKTIKAQIWD-----TAGQ-ERYRAITSAYYRGAVGALLVYDISKHQ-TyD 98 
                 89***************99863.....2356777766666665.33334444444442.....1122.223333333333333133333333333.234 PP

      AAA_22 107 ealeeLrsllnlsrkgvqliLvGtp.el 133
                 ++ ++L++l + +++++ + LvG   +l
  KKY14906.1  99 NVTRWLKELRDHADSNIVIMLVGNKsDL 126
                 4444444444444456666666655555 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   4.8e-05     0.048       5     102 ..      12     124 ..      11     151 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.8e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikell.vkkesilyinldderdkkladpe..........kllelileklke.ekktylflD..Eiqevpewekalkslvde 89 
                 +v+ G   vGK+ ll ++ ++++  +++s++ +++ + + +  a++           + +++i + +++     +l+ D    q ++++ ++lk+l d+
  KKY14906.1  12 VVLIGDSGVGKSNLLSRFTRNEFnLDSKSTIGVEFATRSIQVDAKTIkaqiwdtagqERYRAITSAYYRgAVGALLVYDisKHQTYDNVTRWLKELRDH 110
                 57888899****************9***********999855443212223333343444555554322444555665533678889999999999998 PP

      AAA_14  90 g.knldvivtGSns 102
                   +n+ +++ G +s
  KKY14906.1 111 AdSNIVIMLVGNKS 124
                 75677777776544 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.5e-05     0.025       5     124 ..      11     126 ..       9     159 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.5e-05
                 EEEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG.....GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHH CS
       SRPRB   5 avllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv..ksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAElly 100
                 +v+l+G s  GK  l+ r t ++++    S    ++a++    + k  k ++ D  G+e+ r   + +    + + g + v D +   +   +v  +l 
  KKY14906.1  11 KVVLIGDSGVGKSNLLSRFTRNEFNLDSKSTiGVEFATRSiqVDAKTIKAQIWDTAGQERYRAITSAY---YRGAVGALLVYDISK-HQTYDNVTRWLK 105
                 589*******************99877777766666666545577888999********999754444...444445555666553.345566667776 PP

                 HHHHHHHHHTT---EEEEEE-TTS CS
       SRPRB 101 eilliteklkdavdiliACnKqel 124
                 e+  +      ++ i++  nK++l
  KKY14906.1 106 ELRDHA---DSNIVIMLVGNKSDL 126
                 654433...366777777777776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   3.3e-05     0.033      27      52 ..      12      43 ..      11     180 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.3e-05
      AAA_16 27 vllsGesGvGKsslvrellr...alekd.....g 52
                v+l+G+sGvGKs l+ ++ r       d     g
  KKY14906.1 12 VVLIGDSGVGKSNLLSRFTRnefN--LDskstiG 43
                789************999874332..22334332 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   5.8e-05     0.058       4      41 ..      11      54 ..      10     122 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.8e-05
      AAA_24  4 kiliyGpsgiGKTtlakel......gpkplfidtekGlksldad 41
                k++++G+sg+GK+ l++++       ++   i +e  ++s+++d
  KKY14906.1 11 KVVLIGDSGVGKSNLLSRFtrnefnLDSKSTIGVEFATRSIQVD 54
                89*****************6666665555555555555555555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   3.9e-05     0.039      13      42 ..      11      42 ..      10     162 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.9e-05
                EEEEEESTTSSHHHHHHHHTTSS--..SEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkp..teGei 42
                kv+++G++G GKS Ll+ +++++ +   + +i
  KKY14906.1 11 KVVLIGDSGVGKSNLLSRFTRNEFNldSKSTI 42
                689**************999987664444444 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00017      0.17      38      63 ..      12      37 ..       8      72 .. 0.82
   2 ?   -1.3   0.0       1.2   1.2e+03     142     170 ..     100     130 ..      91     140 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
        TniB 38 lllvGdsnnGKtmivekFarlhppek 63
                ++l+Gds +GK+ ++++F+r++ + +
  KKY14906.1 12 VVLIGDSGVGKSNLLSRFTRNEFNLD 37
                689****************9986544 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.2
        TniB 142 flnalksLgnel..kipivlvGteealralr 170
                 ++  lk L ++   +i i lvG ++ lr+lr
  KKY14906.1 100 VTRWLKELRDHAdsNIVIMLVGNKSDLRHLR 130
                 5556666666541156666788877777665 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00021      0.21      35      72 ..      11      49 ..       9      73 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00021
       AAA_7 35 pvllvGptGtGKtviikd.llkkldkekylsltinfsaq 72
                +v+l+G++G+GK+ ++++ + ++++ ++ +++ ++f  +
  KKY14906.1 11 KVVLIGDSGVGKSNLLSRfTRNEFNLDSKSTIGVEFATR 49
                689***************666777777777777777544 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00026      0.25       2      56 ..      11      67 ..      10      77 .. 0.82
   2 ?   -2.0   0.0       2.3   2.3e+03     110     150 ..     119     160 ..      97     166 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00026
                EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT..EEEEEEE--- CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkg..keveivDlPG 56
                +v+l+G+  vGk+ l+ + t  + +    + + ve ++ +++++    +++i D  G
  KKY14906.1 11 KVVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQVDAktIKAQIWDTAG 67
                799********************9999999999998888888766114556777766 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.3
                 EEEETHHHHHHTTEEE.-HHHHHHHHTS-EEEEBTTTTBTHH CS
      FeoB_N 110 lalnmideaekkgiei.dlkkLsekLgvpvvktsakkkegie 150
                 l+ n++d  + + +   ++k+++++ ++  ++tsa + +++e
  KKY14906.1 119 LVGNKSDLRHLRAVPTeEAKQFASENNLSFIETSALDASNVE 160
                 444555544444433313455556666666666666666655 PP

>> SpoIIID  Stage III sporulation protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.26   2.6e+02      27      52 ..      32      58 ..      20      74 .. 0.75
   2 ?    8.3   0.0    0.0024       2.4      28      70 ..      88     131 ..      80     142 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.26
     SpoIIID 27 kvfgv.skstvhkDvterLkkinkkla 52
                ++f++ skst+  + + r  +++ k  
  KKY14906.1 32 NEFNLdSKSTIGVEFATRSIQVDAKTI 58
                5565549*****999999999986543 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0024
     SpoIIID  28 vfgvskstvhkDvterLkkinkklakqvkevLeknkae.RhiRG 70 
                 v+++sk   + +vt  Lk++  +  +++  +L  nk++ Rh+R 
  KKY14906.1  88 VYDISKHQTYDNVTRWLKELRDHADSNIVIMLVGNKSDlRHLRA 131
                 799*********************************866***96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.6   0.00022      0.22       3      19 ..      13      29 ..      11     109 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00022
      AAA_21  3 vliGpNgsGKSnLLdal 19
                vliG+ g+GKSnLL  +
  KKY14906.1 13 VLIGDSGVGKSNLLSRF 29
                9************9755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       806  (0.0449551); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 1506.41
//
Query:       KKY14907.1  [L=302]
Description: putative integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.025   14.8   0.3       0.16   12.2   0.3    2.1  1  RGS       Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   8.9e-06      0.16      19      84 ..     103     203 ..      87     300 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.9e-06
                 HHHTTCTHHHHHHHHHHHHHTS......................SHHHHHHHHHHHHHHHHTSTTST.TSSTS-HHHHHHHHHHHCSS........... CS
         RGS  19 lesefseenlsFwlaveefkka......................keqeelkkkakeIyneylapssp.kelnidkklreelekrleke........... 83 
                  ++ef  en+s+++++ ++k++                      + ++   + a eIy ++++ + +   +n++ ++++elek ++             
  KKY14907.1 103 ARKEFTGENVSYLMHIRRWKEMwagfestsakeadqndhneeylRIRRRQFNLAVEIYIAFVSLKYSaFPINVPFDIFKELEKLFQSPasllctqsden 201
                 4899999******************************9888877666777778*********977662667**********999888555666555544 PP

                 .S CS
         RGS  84 .q 84 
                   
  KKY14907.1 202 tV 203
                 40 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1891.60
//
Query:       KKY14908.1  [L=440]
Description: hypothetical protein UCRPC4_g06597 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        6.8    6.2  42.6        2.1    7.8  13.8    3.3  3  MscS_porin  Mechanosensitive ion channel porin domain
        6.9    7.1  31.7      0.043   14.2   8.8    3.5  4  CENP-H      Centromere protein H (CENP-H)


Domain annotation for each model (and alignments):
>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.9     0.021   1.8e+02     101     147 ..      85     131 ..      72     138 .. 0.78
   2 ?   -0.4  23.7     0.079   7.1e+02      36     202 ..      96     261 ..      90     265 .. 0.72
   3 ?    7.8  13.8   0.00023       2.1      11     119 ..     258     365 ..     250     374 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.021
  MscS_porin 101 laqlnsqlvelqtrperaqqqltearqrlqeirnrLnstaaageals 147
                 +++++s+  +++  +e++ +q+ ++ ++l+ i n  ++taa+g++ +
  KKY14908.1  85 RNEAESSKMAQSAEIETLKAQMIDMWRQLSSIGNPNKATAAQGTRER 131
                 56778888888999999999999999999999887777777666544 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.079
  MscS_porin  36 kkkaeelqkaiddaPkelrel...qqeleal.qkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlvelqtrperaqqqltearqrlq 130
                  +++e l+ ++ d  ++l ++   ++ ++a  + +    s +i+a+  +++L +++ + +s + +l+++l++ +++l  ++ + +++ qq+    +r q
  KKY14908.1  96 SAEIETLKAQMIDMWRQLSSIgnpNKATAAQgTRERRRRSDQIPASSDIKALCSKYRKIESSQVALTKELQSVKTDLKMQRLANTQLLQQQERLDERPQ 194
                 56666666666666666666622234444446777888899***************************************9888777777655555444 PP

  MscS_porin 131 eirnrLnstaaagealsqaqrtalqaelaaleaqieeleqellsn....nnrqeLlklqrdllklriqqleqelqa 202
                              +als++  t   +++ a +++i+ le el s+    +++q+ +++ r + ++   + ++e + 
  KKY14908.1 195 GGHE---------AALSADTITVAATQSVAKDNRIKSLEAELDSArhelTAMQSVAEANRAQSSKAAVEADAETAS 261
                 4433.........499999999999999999999999999999873333456666666666665555555555555 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00023
  MscS_porin  11 deaeqkallqdLeqalnlL.dkidkskkkaeelqkaiddaPkelrelqqelealqkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlnsql 108
                 ++a+  + +++L ++l     +i+++++k++  ++a  ++ + lr+ q+e + l  ++  ++    +++s +e +  + + +s+  +l +++  l+ ++
  KKY14908.1 258 ETASLRQSKAALSASLLSAqREIKEYQQKLKTQEQATGNFAAGLRNSQREVADL--QSRINVLVGNDEISRREVQEAQRTYQSHIDRLFRARGLLQRRI 354
                 56777777777777765441689*******************************..99999999999******************************** PP

  MscS_porin 109 velqtrperaq 119
                  + ++r e aq
  KKY14908.1 355 EQEEDRKEVAQ 365
                 *9999999998 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.5     0.054   4.8e+02      43      78 ..      74     109 ..      66     123 .. 0.71
   2 ?    1.3   0.8     0.051   4.5e+02       8      51 ..      85     128 ..      82     145 .. 0.68
   3 ?   14.2   8.8   4.7e-06     0.043       6      91 ..     142     243 ..     137     248 .. 0.89
   4 ?    2.0   7.2      0.03   2.7e+02      21      62 ..     258     309 ..     243     354 .. 0.43

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.054
      CENP-H  43 nrelaaellelakekesekeklkeelekleaelkks 78 
                 n++l  +    ++e+es k+ +++e+e+l+a++ + 
  KKY14908.1  74 NKKLRIDFDSYRNEAESSKMAQSAEIETLKAQMIDM 109
                 455555555667778888888999999999887554 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.051
      CENP-H   8 rdelssellklsqelrelqeeltevekenlrlkrknrelaaell 51 
                 r+e+ s+ +++s+e+++l++++ ++ ++  ++ + n+  aa+ +
  KKY14908.1  85 RNEAESSKMAQSAEIETLKAQMIDMWRQLSSIGNPNKATAAQGT 128
                 55566666777777777777777777777777777777777764 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 4.7e-06
      CENP-H   6 eqrdelssellklsqelrelqeeltevekenlrlkrknrelaaellelakekesek................eklkeelekleaelkksrqrwrvvknv 88 
                   + +l+s++ k++++  +l++el++v+ + +  + +n +l+++ ++l +  +                     +++++++leael+ +r++ + ++ v
  KKY14908.1 142 SDIKALCSKYRKIESSQVALTKELQSVKTDLKMQRLANTQLLQQQERLDERPQGGHeaalsadtitvaatqsVAKDNRIKSLEAELDSARHELTAMQSV 240
                 56889***************************************98777766655568999*9**999987755899********************** PP

      CENP-H  89 asa 91 
                 a a
  KKY14908.1 241 AEA 243
                 976 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.03
      CENP-H  21 elrelqeeltevekenlrlkrknrelaaellelakekesek..........e 62 
                 e+++l+++ + + ++ l+++r+ +e  ++l  +++++ +             
  KKY14908.1 258 ETASLRQSKAALSASLLSAQREIKEYQQKLKTQEQATGNFAaglrnsqrevA 309
                 4444444444444444444444444444442111111111123322222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1635  (0.091193); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.36s 00:00:01.14 Elapsed: 00:00:00.53
# Mc/sec: 2484.78
//
Query:       KKY14909.1  [L=556]
Description: putative glycosyltransferase family 71 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-38  132.6   0.3    1.4e-26   93.5   0.0    2.1  2  Mannosyl_trans3  Mannosyltransferase putative


Domain annotation for each model (and alignments):
>> Mannosyl_trans3  Mannosyltransferase putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.0   7.6e-31   1.4e-26       1     137 [.     221     354 ..     221     369 .. 0.85
   2 !   37.6   0.1   8.6e-14   1.5e-09     181     273 ..     369     449 ..     357     451 .. 0.88

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 7.6e-31
  Mannosyl_trans3   1 gkGIVisgggkesllalrlI.kvLralgnkLPIeivikkeelekefcekilpaaeepkqevwfvnak...cvlnedylgkefkgfqnKalAllf 90 
                      g+GIVi++g+++s+  +r+I ++L +lg++LPIei + ++e+++e+ ++i      + ++++f +++   ++ ++++ g  + ++q+K+ A++ 
       KKY14909.1 221 GRGIVIVAGNQKSMNRVRVIlRALTKLGSTLPIEIHYWDDEMTEELQSEISL----MWPQMYFNDLSkptNIFKTNHDGP-YINYQLKTAAVIN 309
                      89********666655555439****************99999999999998....8999*****862215666666666.66*********** PP

  Mannosyl_trans3  91 ssFeevllLDaDnvplknpdklFeseeYkktglllwkdrdlwkrsts 137
                      s F e llLD+Dn+p+  p++l+es  Y+++g+l+w  +d+ +++ +
       KKY14909.1 310 SRFAEPLLLDSDNIPIIAPETLYESSTYQEYGTLFW--PDIARTRSN 354
                      ************************************..**9988744 PP

  == domain 2  score: 37.6 bits;  conditional E-value: 8.6e-14
  Mannosyl_trans3 181 dhssesGlvvinKkkhlktLllalylnlygpk.ykllsqgaagegdKEtfwlaahvlgekYyfvkekaaaiGeltkkekkkseskeicsaqlgh 273
                      +  +esG+++++K+k +  L la+ +n +  + y+++ +g     dK+tf +a+h+l+ kY   ++   ++G+lt++         +c+ ++++
       KKY14909.1 369 EYEQESGQLIVDKRKFFYHLQLAAWFNNNYADyYNEFLLG-----DKDTFRFAWHALKTKYGSPPKWLTSVGTLTDD--------FYCGHSFAQ 449
                      6679***********************987888999****.....*****************************994........566666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.51
# Mc/sec: 3298.07
//
Query:       KKY14910.1  [L=456]
Description: putative c-5 cytosine methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 3077.73
//
Query:       KKY14911.1  [L=904]
Description: putative nitrogen regulatory protein area [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-16   58.6   2.3    3.4e-16   58.6   2.3    1.9  2  GATA      GATA zinc finger
    7.9e-12   44.8   3.0    1.5e-11   43.9   3.0    1.5  1  DUF1752   Fungal protein of unknown function (DUF1752)
    0.00069   20.2   1.6    0.00069   20.2   1.6    3.7  5  AreA_N    Nitrogen regulatory protein AreA N terminus


Domain annotation for each model (and alignments):
>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       0.6   3.6e+03       8      16 ..     538     546 ..     534     550 .. 0.79
   2 !   58.6   2.3   5.6e-20   3.4e-16       1      35 [.     628     661 ..     628     662 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.6
        GATA   8 kTplWRrgp 16 
                  +p+W++g+
  KKY14911.1 538 HSPDWNHGG 546
                 59****996 PP

  == domain 2  score: 58.6 bits;  conditional E-value: 5.6e-20
        GATA   1 CsnCgttkTplWRrgpdgnksLCnaCGlyykkkgl 35 
                 C+nC t +TplWRr+p+g++ LCnaCGl+ k++g+
  KKY14911.1 628 CTNCFTQTTPLWRRNPEGQP-LCNACGLFLKLHGV 661
                 ********************.************97 PP

>> DUF1752  Fungal protein of unknown function (DUF1752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   3.0   2.5e-15   1.5e-11       1      28 []      90     117 ..      90     117 .. 0.97

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 2.5e-15
     DUF1752   1 lWkyytkkkkdlpngeRLENlSWRlWnk 28 
                 +Wk+y+k+k  lpn+eR+ENl+WR++++
  KKY14911.1  90 IWKLYSKTKIRLPNQERMENLTWRMMAM 117
                 7*************************96 PP

>> AreA_N  Nitrogen regulatory protein AreA N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   1.6   1.2e-07   0.00069      28      94 .]      12      79 ..       2      79 .. 0.66
   2 ?   -2.7   0.2       1.6   9.6e+03      29      59 ..     145     174 ..     124     183 .. 0.49
   3 ?   -2.7   0.1       1.6   9.3e+03      21      64 ..     556     597 ..     543     599 .. 0.49
   4 ?   -2.3   0.2       1.2   7.4e+03      36      62 ..     703     728 ..     679     753 .. 0.61
   5 ?   -4.0   0.3         3   1.8e+04      27      43 ..     791     806 ..     774     822 .. 0.51

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.2e-07
      AreA_N 28 vadadrsssnnfshlpatssqlsd..dfslgs.elsPadsaqvqdgllqdslfPewkagaPraGvdsPde 94
                v  +d   sn ++      s + d  d+s g   lsP ds  ++ +ll+d++fP wk +a  + + sP e
  KKY14911.1 12 VNSPDDFGSNLPNASI-QHSTMNDgsDMSGGQhALSPDDS-VAHTDLLRDAVFPYWKDDAGGEEISSPGE 79
                4445554555444422.22233332277777625888888.89999**************9999999976 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.6
      AreA_N  29 adadrsssnnfshlpatssqlsddfslgsel 59 
                   ad+s+ ++ +    + +   ddf +  ++
  KKY14911.1 145 KSADKSAEAQIQA-EHADAMNLDDFIVPNSI 174
                 3344533333333.23333344666654444 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.6
      AreA_N  21 afassydvadadrsssnnfshlpatssqlsddfslgselsPads 64 
                 a  s+    d d +  + +  ++++++ l+  +   ++ sP++s
  KKY14911.1 556 ASVSEIRNRDNDPRRQKIP--RTSSTPVLAGGMHASTPTSPPES 597
                 3333333334443222222..23556667777777777777776 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.2
      AreA_N  36 snnfshlpatssqlsddfslgselsPa 62 
                 ++ +   p++   lsd+ s  s+ s  
  KKY14911.1 703 AQTPVTTPTSMRALSDNASA-SPPSNQ 728
                 33444444555567777665.443444 PP

  == domain 5  score: -4.0 bits;  conditional E-value: 3
      AreA_N  27 dvadadrsssnnfshlp 43 
                  ++ a  sssnn +   
  KKY14911.1 791 RLSKASISSSNNNQS-S 806
                 333444444444332.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (904 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.50
# Mc/sec: 5471.17
//
Query:       KKY14912.1  [L=336]
Description: putative pre-rrna-processing protein ipi1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-24   86.3   2.9    5.6e-24   84.7   0.0    2.8  3  Ipi1_N    Rix1 complex component involved in 60S ribosome mat
     0.0074   16.8   0.3        1.5    9.4   0.1    2.6  2  HEAT_EZ   HEAT-like repeat
  ------ inclusion threshold ------
      0.021   15.3   0.0      0.078   13.5   0.0    1.8  1  DinB_2    DinB superfamily
       0.11   12.8   2.1        1.6    9.2   0.2    3.5  4  HEAT      HEAT repeat
       0.16   11.4   0.0        3.4    7.1   0.0    2.1  2  IglC      Intracellular growth locus C protein


Domain annotation for each model (and alignments):
>> Ipi1_N  Rix1 complex component involved in 60S ribosome maturation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.9      0.79   2.9e+03      70      91 ..       9      30 ..       1      49 [. 0.54
   2 ?   -0.7   0.1      0.61   2.2e+03      26      37 ..      75      86 ..      57      93 .. 0.82
   3 !   84.7   0.0   1.6e-27   5.6e-24       1     102 []     131     227 ..     131     227 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.79
      Ipi1_N 70 gstsakatsssssskktskksr 91
                +++++  t+++ +++kt++k+ 
  KKY14912.1  9 REKKKDFTKTKLKVGKTKPKAS 30
                2222225556666666555543 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.61
      Ipi1_N 26 redslkfLdllL 37
                r+dsl+fL  ++
  KKY14912.1 75 RRDSLAFLTTFV 86
                789999998776 PP

  == domain 3  score: 84.7 bits;  conditional E-value: 1.6e-27
      Ipi1_N   1 eelaphaeslllyirsAmTHispdIredslkfLdllLevapeelvssa..wvktLnnflallgwskeksskgstsakatsssssskktskksrlkvLsv 97 
                 eel+ ha+++l y+r++mTH+++dIr ++ ++L++lL+va+ee+vs++  ++kt+n+f+++l+w+++k   g+t      + ++ ++ ++ks+ k L+ 
  KKY14912.1 131 EELRDHASEILPYLRAGMTHLAADIRLSANDTLSWLLDVAGEEIVSCPggFIKTMNCFMSMLNWHSSKAGMGQT------KFGKPGT-EGKSMSKILQC 222
                 5899************************************************************5444444444......3555555.9********** PP

      Ipi1_N  98 lakfL 102
                 l +fL
  KKY14912.1 223 LGEFL 227
                 **998 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1   0.00041       1.5       2      47 ..      73     120 ..      72     128 .. 0.79
   2 ?    4.9   0.0      0.01        37      20      51 ..     131     162 ..     125     164 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00041
     HEAT_EZ   2 rvRraAawaLGr..laggepel..lqplvpeilpaLlalLnddsdeVRaa 47 
                 ++Rr  ++ L +  +   +p +  l++ ++ +lp L++l  d s++VR++
  KKY14912.1  73 AQRRDSLAFLTTfvA--SRPVDspLPQPISFLLPKLCPLILDASPSVRTQ 120
                 678888888877543..4555544899*********************97 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.01
     HEAT_EZ  20 ellqplvpeilpaLlalLnddsdeVRaaAaga 51 
                 e l+++ +eilp+L a++++  +++R  A  +
  KKY14912.1 131 EELRDHASEILPYLRAGMTHLAADIRLSANDT 162
                 5689999*********9988666666666555 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.2e-05     0.078       5      87 ..     117     307 ..     116     324 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.2e-05
      DinB_2   5 ararllalledlteeelnrqp.............................................................................. 25 
                 +r +ll+l+++l+eeel+ +                                                                               
  KKY14912.1 117 VRTQLLKLFKALPEEELRDHAseilpylragmthlaadirlsandtlswlldvageeivscpggfiktmncfmsmlnwhsskagmgqtkfgkpgtegks 215
                 799*****************99***************************************************************************** PP

      DinB_2  26 ..............................spgkwsiawllaHlgnveelllerlr..geeaprpgldpltppsaaealaylaev.rarllalle 87 
                                                +++w+ ++l +H +++   +  +l+  g   p + +d+ +  ++++ +ay++++ r+ + a +e
  KKY14912.1 216 mskilqclgeflkisvgtddtiqmdkfdeaRTLMWPYWHLNHHMISTRSNAYGYLNlfG---PSRDDDSQMLEDRDDRIAYFNKQyRGIVEAGVE 307
                 ****************************999***************9998887777789...66677888889*********9651555555555 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.6   1.7e+04       8      21 ..      66      79 ..      65      86 .. 0.65
   2 ?    9.2   0.2   0.00046       1.6       1      27 [.     102     128 ..     102     128 .. 0.91
   3 ?    0.4   0.0      0.31   1.1e+03       1      23 [.     140     162 ..     140     164 .. 0.86
   4 ?   -0.6   0.0      0.64   2.3e+03      21      30 ..     220     229 ..     217     230 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.6
                HHT-SSHHHHHHHH CS
        HEAT  8 llsDpspeVReaAa 21
                ll ++s  +R+ ++
  KKY14912.1 66 LLGSKSDAQRRDSL 79
                67788888876554 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00046
                 HHHHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgal 27 
                 llP l+ l+ D sp+VR   +k + al
  KKY14912.1 102 LLPKLCPLILDASPSVRTQLLKLFKAL 128
                 89****************999988765 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.31
                 HHHHHHHHHT-SSHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAaka 23 
                 +lP l   +++ ++++R +A  +
  KKY14912.1 140 ILPYLRAGMTHLAADIRLSANDT 162
                 799999999**9*****999665 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.64
                 HHHHHHHHHC CS
        HEAT  21 akaLgalaev 30 
                 +++Lg+++++
  KKY14912.1 220 LQCLGEFLKI 229
                 79****9985 PP

>> IglC  Intracellular growth locus C protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.034   1.2e+02     116     192 ..      16      91 ..       7      94 .. 0.70
   2 ?    7.1   0.0   0.00094       3.4     106     155 ..     215     264 ..     208     281 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.034
                 GG--EEE--B-S--EE-TTSSEE-SB--TT-EEEES-TTT-EEEE.EE-STT---TTSEEEEEEEEEEEE-S--EEEE CS
        IglC 116 tdmkiklgnsnkkqeyktdeawgimidlsnlelypisakafsisi.eptelmgvskdgmryhiisidglttsqgslpv 192
                 t  k+k+g+++ k   +td ++     + n +    sa + s      t l+g   d  r    s+  ltt   s pv
  KKY14912.1  16 TKTKLKVGKTKPKASSHTDTSFRAKAIVLNQQSLSTSAPTSSAQFsHHTSLLGSKSDAQRRD--SLAFLTTFVASRPV 91 
                 7889***************9886554444555445555555544315789999999988876..44556776666665 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00094
                 HHHHHHHCHGGG--EEE--B-S--EE-TTSSEE-SB--TT-EEEES-TTT CS
        IglC 106 kvssilqasatdmkiklgnsnkkqeyktdeawgimidlsnlelypisaka 155
                  +s ilq+    +ki +g  +  q  k dea  +m     l+ + is+++
  KKY14912.1 215 SMSKILQCLGEFLKISVGTDDTIQMDKFDEARTLMWPYWHLNHHMISTRS 264
                 4789********************************99999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 2140.52
//
Query:       KKY14913.1  [L=1117]
Description: putative serine threonine protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-57  194.8   0.0    2.6e-57  194.2   0.0    1.3  1  Pkinase         Protein kinase domain
    4.7e-38  129.5   0.0    1.9e-37  127.6   0.0    2.0  2  Fungal_KA1      Fungal kinase associated-1 domain
    1.5e-31  109.6   0.0    2.4e-31  109.0   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    0.00014   21.0   0.0    0.00028   19.9   0.0    1.4  1  Haspin_kinase   Haspin like kinase domain
    0.00041   19.8   0.0    0.00091   18.6   0.0    1.5  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0022   17.9   0.0      0.033   14.1   0.0    2.2  2  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.016   14.8   0.0      0.031   13.9   0.0    1.4  1  Choline_kinase  Choline/ethanolamine kinase
      0.041   13.2   0.0       0.07   12.4   0.0    1.3  1  Kinase-like     Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.2   0.0   1.1e-60   2.6e-57      52     263 ..       1     200 [.       1     201 [. 0.93

  Alignments for each domain:
  == domain 1  score: 194.2 bits;  conditional E-value: 1.1e-60
                 HHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSS CS
     Pkinase  52 lkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakeles 150
                 +k ++hpn+++ly+v+e+  elylvleyveggel+d+++  g+l+eeea ++++qi++gl+y+H+ +i+HrDlKpeNiL+d+++++K++DFG+a+    
  KKY14913.1   1 MKLIEHPNVINLYDVWENRGELYLVLEYVEGGELFDYVSCYGALPEEEAVRLFRQIIAGLSYCHRFNICHRDLKPENILLDSNRNIKLADFGMAALQPA 99 
                 56789**********************************99********************************************************** PP

                 SCSBCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SS CS
     Pkinase 151 sskltsfvgtseYlAPEvlkeney.skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkd 248
                 +  l++ +g+++Y APE++ +++y + k+D+Ws+G+il+ +l+g  pf g + +++ +               +k ++  + ++s ea dl++++l+k 
  KKY14913.1 100 DRWLNTSCGSPHYAAPEIIYGRKYrGDKADIWSVGIILFAMLNGFLPFDGGDVTSTLRLV-------------KKGEYYLPPSLSVEASDLIQRILQKR 185
                 999****************888888************************55555522222.............245789999***************** PP

                 GCCSTTHHHHHTSGG CS
     Pkinase 249 pkkRltaeellqhpy 263
                 p++R++++ + qhp 
  KKY14913.1 186 PEDRISMNGIWQHPL 200
                 *************97 PP

>> Fungal_KA1  Fungal kinase associated-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.2   2.6e+03       3      16 ..     916     929 ..     915     953 .. 0.64
   2 !  127.6   0.0   8.5e-41   1.9e-37       2     118 .]     979    1099 ..     978    1099 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.2
  Fungal_KA1   3 qnwFarlfsvksat 16 
                 ++wF+++f +++ +
  KKY14913.1 916 KSWFSKVFGKGKVK 929
                 79******988766 PP

  == domain 2  score: 127.6 bits;  conditional E-value: 8.5e-41
  Fungal_KA1    2 kqnwFarlfsvksatkvlktslskkelrqelaklLreWkkyGlkdvksdkesntitgkvsseNilslksvkFeieiisvseh....klSlvrftkek 94  
                  +qnwFa++f+vk+atk l++++sk+++r+e  ++LreW++yGl+dv  dk++ +++g+v++eN+l+lk+v+F+ e ++v+eh    +l++ rft+e+
  KKY14913.1  979 NQNWFAKFFHVKPATKILCFRISKQRARKETCRILREWRRYGLRDVYADKARCVLFGRVDAENYLHLKPVHFAGEYFTVLEHgkrvNLCVCRFTQER 1075
                  79*********************************************************************************************** PP

  Fungal_KA1   95 GsassfrklvkeiekvlrkegvLv 118 
                  G+assf k+v+++  v +++g+Lv
  KKY14913.1 1076 GAASSFYKVVDTLALVCKERGLLV 1099
                  **********************96 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0   0.0   1.1e-34   2.4e-31      55     256 ..       1     196 [.       1     198 [. 0.91

  Alignments for each domain:
  == domain 1  score: 109.0 bits;  conditional E-value: 1.1e-34
                  HHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEE CS
  Pkinase_Tyr  55 mkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLard 152
                  mk ++hpn+++l+ v  ++++l++v+eyv+gG+L +++      +l  ++ +++  q+ +G++y ++ ++ Hrdl   N+Ll++n+ +k++DfG+a  
   KKY14913.1   1 MKLIEHPNVINLYDVWENRGELYLVLEYVEGGELFDYVSCY--GALPEEEAVRLFRQIIAGLSYCHRFNICHRDLKPENILLDSNRNIKLADFGMAAL 96 
                  7778***********************************98..9****************************************************98 PP

                  TTTSSEEEETTSSTSGGGGS-HHHHHHSEEE.HHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr 153 iekddeyvkkeeaklpvkWmapEslkekkft.sksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeR 249
                         +  +++  + ++ apE++  +k+   k+D+Ws G++l+ +++ g  p+ g + +++l+ +k+g+    p+  + e  +l+++ ++++pe+R
   KKY14913.1  97 Q---PADRWLNTSCGSPHYAAPEIIYGRKYRgDKADIWSVGIILFAMLN-GFLPFDGGDVTSTLRLVKKGEYYLPPS-LSVEASDLIQRILQKRPEDR 189
                  8...33333344456679***********97479*************99.*****************9999877666.9999**************** PP

                  --HHHHH CS
  Pkinase_Tyr 250 ptfselv 256
                   +++ + 
   KKY14913.1 190 ISMNGIW 196
                  **99875 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.3e-07   0.00028     181     257 ..      19      97 ..       5     107 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.3e-07
  Haspin_kinase 181 eqqlflvlllkdkGtdLeev...klkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRle 257
                     ++l+lvl+  ++G+  + v        ++a ++f qi++ L+    +f+  HRdL+ +niL+d+n n+ l d+ ++ l+
     KKY14913.1  19 RGELYLVLEYVEGGELFDYVscyGALPEEEAVRLFRQIIAGLSYC-HRFNICHRDLKPENILLDSNRNIKLADFGMAALQ 97 
                    566777777777777766662222334578999*********987.69**************************999876 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0     4e-07   0.00091     109     179 ..      38     103 ..      23     106 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 4e-07
         Kdo 109 lakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlradrwr 179
                 +  +  l+ee   +l++++ +  +  hr +++H+dl + nill+ +     +i l D+  a+l+  adrw 
  KKY14913.1  38 VSCYGALPEEEAVRLFRQIIAGLSYCHRFNICHRDLKPENILLDSNR----NIKLADFGMAALQP-ADRWL 103
                 44444577777788889999999999*******************98....999******99998.99996 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.11   2.5e+02      56     108 ..       8      66 ..       3      67 .. 0.83
   2 !   14.1   0.0   1.5e-05     0.033     168     200 ..      68      98 ..      64     100 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.11
                 B-CTTBS-EEETTEEEEEEE----EE-SS......HHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  56 evlagdtddeeigllfalieyvpgrsllr......klsaaqlpellealgeflaalhqv 108
                  v+ +    e +g l++++eyv+g  l +      +l ++++ +l++++++ l   h++
  KKY14913.1   8 NVINLYDVWENRGELYLVLEYVEGGELFDyvscygALPEEEAVRLFRQIIAGLSYCHRF 66 
                 555555566778889**************999999999999999999999988877776 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.5e-05
                 EE-SS-SGGGEEEC..TTEEEEE---TT-EEEE CS
         APH 168 llHgDlhpgNllvdpddgrvtGviDfedaglgp 200
                 ++H+Dl+p N+l+d++ +    + Df++a l p
  KKY14913.1  68 ICHRDLKPENILLDSNRNIK--LADFGMAALQP 98 
                 8*************555544..99999998876 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.4e-05     0.031     144     175 ..      65      95 ..      43     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
                     -EEEE-S--SGGGEEE.-CTTEEEE--GTT-E CS
  Choline_kinase 144 pvvfcHnDlqegNillnkeekklvlIDFEYag 175
                       + cH Dl ++Nill ++++++ l DF  a+
      KKY14913.1  65 RFNICHRDLKPENILL-DSNRNIKLADFGMAA 95 
                     4789************.9999*******7766 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.1e-05      0.07     157     252 ..      60     149 ..      44     189 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.1e-05
  Kinase-like 157 aanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltl 252
                    + +   + h +++++n+lld +  ++l +f+    + +   l++ +    +a pE++  r+ y+         k d W +G+  + +    lP++ 
   KKY14913.1  60 LSYCHRFNICHRDLKPENILLDSNRNIKLADFGMAALQPADRWLNTSCgsPHYAAPEIIYGRK-YRG-------DKADIWSVGIILFAMLNGFLPFDG 149
                  556677899**********************98655555444445555448899999987643.344.......578******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 7401.90
//
Query:       KKY14914.1  [L=467]
Description: putative fasciclin domain family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-47  160.1   0.0    1.3e-25   90.1   0.0    2.3  2  Fasciclin  Fasciclin domain


Domain annotation for each model (and alignments):
>> Fasciclin  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   5.7e-23     1e-18       4     128 .]     141     267 ..     138     267 .. 0.81
   2 !   90.1   0.0     7e-30   1.3e-25       1     128 []     280     430 ..     280     430 .. 0.89

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 5.7e-23
                 HHHHHHHHTT.TCCCCCTCSSSSEEEEEE-HHHHCCCHHHHHHHHHTCHHHHHHHHHTTEEESSS-HHHHHHHHEEEECCTTSS.....EEEEEEEGGT CS
   Fasciclin   4 stfvslleka.glaeeLnkkdgglTvFaPtneAfaklppellakllndkkklkeiLkyHvvpetvsssalkkasetlatllega.....klrvniekgn 96 
                 + +++l+ +  +l+e+Ln+++ ++T+F+Pt++Af+k+p++ ++    +k+ lk++L+yH+ pe + + ++ ++ +t++tl +       + r++ + + 
  KKY14914.1 141 TVLAKLIDDYpDLVETLNGTKANYTLFVPTDKAFKKIPKHAPKP---SKEFLKKVLEYHISPEFYPAGRVLTT-RTIPTLFKSPalgdaPQRLSSQISL 235
                 678889999899******9999******************9998...79******************999999.7766622222233334444444224 PP

                 TEEEETTEEEEEEEEEEESSEEEEEESS-TSX CS
   Fasciclin  97 gtvtvngkarvvrsdieatngvihvidkvLlp 128
                 + +t++  +++ + ++ atngvih id++L+p
  KKY14914.1 236 KGLTLDFYSKIFSVNHFATNGVIHAIDSILVP 267
                 456665599*********************98 PP

  == domain 2  score: 90.1 bits;  conditional E-value: 7e-30
                 GGGHHHHHHHHTTTCCCCCT..CSSSSEEEEEE-HHHHCCCHHHHHHHHHT..CHHHHHHHHHTTEEES.SS-HHHHHHH....HEE............ CS
   Fasciclin   1 sdlstfvsllekaglaeeLn..kkdgglTvFaPtneAfaklppellaklln..dkkklkeiLkyHvvpe.tvsssalkka....set............ 78 
                 s++st+  +l k+g+  +Ln  + + g T+FaP+n Af+kl+p+ +a+l++  ++k+lk++L+yH+v++ t++s+a++k+    + +            
  KKY14914.1 280 SEFSTLDLALYKTGIGFHLNdtSAHTGGTIFAPSNGAFKKLGPKINAFLFSiyGEKYLKALLEYHLVANyTLYSDAFYKGedvdD-Qaygripkgqyhv 377
                 589****************9877778*******************************************999********66651.1555556666677 PP

                 .EECCTTSSEEEEEEE..GGTTEEEETTEEEEEEEEEEESSEEEEEESS-TSX CS
   Fasciclin  79 .latllegaklrvnie..kgngtvtvngkarvvrsdieatngvihvidkvLlp 128
                  l+t+l+g++l+++i       ++++ng  rv  +d  a++gvihv+++vL+p
  KKY14914.1 378 dLPTALDGKSLSIDIGrfGRLIEIKINGYNRVAIADGIAADGVIHVVNSVLIP 430
                 7***************6444449*****999********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3304.57
//
Query:       KKY14915.1  [L=168]
Description: putative allergen asp f3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-32  110.4   0.0    6.9e-32  110.2   0.0    1.0  1  Redoxin   Redoxin
      2e-10   40.6   0.0    2.3e-10   40.5   0.0    1.2  1  AhpC-TSA  AhpC/TSA family


Domain annotation for each model (and alignments):
>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.0   7.7e-36   6.9e-32       1     147 []       5     165 ..       5     165 .. 0.92

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 7.7e-36
                 -TTSBB---E............CCEETTCEEEEEHHH.HTTSEEEEEEESTTT-HHHHHTHH..HHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH.. CS
     Redoxin   1 kagdkaPdft............lplaatdgnsvslse.fkgkkvvvnfvpgafcPtCsaehp..yleklaellkekgvdvvavvadndafvkefwgk.. 82 
                 k+gdk+Pd +              +++  +++++ s+ +++kkvv++++pgaf+PtCsa  +  y++k +e  k+kgvd++av a nda+v+++w+k  
  KKY14915.1   5 KVGDKFPDNVtftyvpfteaeaGITVCGFPQPYNASKeWADKKVVIFALPGAFTPTCSATQLpgYIAKEKEI-KSKGVDIIAVAAINDAYVMDAWAKan 102
                 689****877899*******994579********************************86666*****9888.************************** PP

                 ..TT-TSEEEE-TTSHHHHHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESSSCHT.STTSHHHHH CS
     Redoxin  83 ..eglkfpvlsDgsaaftkalGlrleedaseglrtpryavidedgkvvylevepepet.eesnaeavl 147
                   +++++++l D++ +f ka G++l +    g r+ r a+i+++gk++y  +ep  ++ + s+aea+l
  KKY14915.1 103 gvKNNDILFLGDEGLNFGKAVGWDLPN----G-RLARAAMIIDHGKITYHALEPHQQKvTNSGAEAIL 165
                 **999*****************55443....3.*********************99889999999876 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   2.5e-14   2.3e-10      21     123 ..      41     146 ..       6     147 .. 0.88

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 2.5e-14
                 HHHTTSEEEEEEESTST-CCHH.HHHHHHHHCHHHCCCTTEEEEEEES.SSCHHHHHHHHH-H....SSEEEE-TTSHHHHHTT-EETTTTECSCEEEE CS
    AhpC-TSA  21 sdykgkpvvlffypkdwcpvCt.telpalaklyeefkergvevigvsv.dspeshkkfiekes...lnfpllsDeegkvakaygvlkeekglalratfv 114
                 ++ ++k+vv+f  p++++p C  t+lp + ++ +e+k++gv++i+v + ++ + + +++++++     +  l De  ++ ka g   ++ g   ra+ +
  KKY14915.1  41 KEWADKKVVIFALPGAFTPTCSaTQLPGYIAKEKEIKSKGVDIIAVAAiNDAYVMDAWAKANGvknNDILFLGDEGLNFGKAVGWDLPN-GRLARAAMI 138
                 55699****************6479**********************99**************8887889999***9**9999998776.889999999 PP

                 E-TTSBEEE CS
    AhpC-TSA 115 idkegkiry 123
                 id+ gki+y
  KKY14915.1 139 IDH-GKITY 146
                 996.99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 1066.63
//
Query:       KKY14916.1  [L=341]
Description: putative 66s preribosome component mak16 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-36  125.8   0.9    2.4e-36  125.0   0.9    1.4  1  Ribosomal_L28e  Ribosomal L28e protein family
    6.3e-28   97.3  17.5    6.3e-28   97.3  17.5    2.3  2  Mak16           Mak16 protein C-terminal region
    3.6e-06   26.6  14.2    4.4e-06   26.3  14.2    1.1  1  BUD22           BUD22
  ------ inclusion threshold ------
       0.11   12.2   1.8       0.16   11.7   1.0    1.6  1  PYC_OADA        Conserved carboxylase domain
       0.13   10.8  19.2       0.18   10.4  19.2    1.3  1  TFIIF_alpha     Transcription initiation factor IIF, alpha su
       0.75    7.9  25.4       0.98    7.6  25.4    1.1  1  Nop14           Nop14-like family
        9.3    4.9   8.6         12    4.5   8.6    1.2  1  SAPS            SIT4 phosphatase-associated protein


Domain annotation for each model (and alignments):
>> Ribosomal_L28e  Ribosomal L28e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.0   0.9   9.4e-40   2.4e-36       1     114 [.       6     120 ..       6     121 .. 0.94

  Alignments for each domain:
  == domain 1  score: 125.0 bits;  conditional E-value: 9.4e-40
  Ribosomal_L28e   1 LiWelvrnnn..sFlvktrtsnkqtFsrepyNltglhsrkysglanskavtVr..eekkgvvlvtkkkerahkpakawekvklsknsrkalkqia 91 
                     ++W+++ n++  s++ kt+  ++q+F+r+++N+tg ++r++++lans+++tVr  + ++ ++l++k +er h p+k+we+++ls+n+ kal q++
      KKY14916.1   6 IVWQVI-NQQfcSYKLKTT--KNQNFCRNEHNVTGFCNRQSCPLANSRYATVRsdPSTGHLYLYIKVPERTHLPSKWWERIRLSSNYAKALGQVD 97 
                     59****.8888******54..5789****************************666699************************************ PP

  Ribosomal_L28e  92 kllkky.rpdlrkaalaRlskitq 114
                     ++l  y +++l++++++Rl+++tq
      KKY14916.1  98 EKLI-YwPKFLIHKCKQRLTRLTQ 120
                     ***9.55***************98 PP

>> Mak16  Mak16 protein C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3  17.5   2.4e-31   6.3e-28       2     100 .]     145     251 ..     144     251 .. 0.77
   2 ?   -5.4  10.0         7   1.8e+04      71      95 ..     265     289 ..     249     295 .. 0.36

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 2.4e-31
       Mak16   2 kKverRekrReeKAlaAAklekaIekeLleRLksgaYgd.iynveekafkkvlekee..e..eeeeeeeeeeeeeeeeeeeeee..geveyvede.eee 92 
                 +K++rRe++Re+KA+aAAk+e+aIe+eL++RL+sgaYgd ++nvee ++k+v++  e  e  e e e e+ee e+ee e+e+ee  geveyv+d  e+e
  KKY14916.1 145 PKIRRREETRERKAEAAAKVERAIERELIDRLRSGAYGDrPLNVEEGVWKRVMRGLEraEkgE-EIELEDEEREQEEYEDEDEEgvGEVEYVSDLgEDE 242
                 8*****************************************************999642332.2222333333334444444478*******986666 PP

       Mak16  93 eele.dled 100
                 e+l+ d+ed
  KKY14916.1 243 EDLDeDFED 251
                 666515776 PP

  == domain 2  score: -5.4 bits;  conditional E-value: 7
       Mak16  71 eeeeeeeeeegeveyvedeeeeeel 95 
                  ++e+ee++++e +  +d ++++++
  KKY14916.1 265 ASDEDEEQTDQEADSSSDPDSHDDE 289
                 1111111111333333333322222 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3  14.2   1.7e-09   4.4e-06     108     282 ..     109     310 ..      68     321 .. 0.53

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.7e-09
       BUD22 108 envtsrLlnsktvkevveeivesv.....kkllgiekkkkkkeeekkkkkkkkkkkkkkeeee......................eeesdkeeesedse 179
                 ++ ++rL+  ++v+ ++ +  ++      ++++ + +k  ++ee +++k+++++k +++ e e                      +++ +  e +e++e
  KKY14916.1 109 HKCKQRLTRLTQVSIRMRRLAKEEerlgeRTVARLAPKIRRREETRERKAEAAAKVERAIERElidrlrsgaygdrplnveegvwKRVMRGLERAEKGE 207
                 555556666666655555554433112323444444455555555555555556666666666888999999999999998888855555555555555 PP

       BUD22 180 deekeeseddeeeeeededdedaee...deedeeaeerelaqydg.llasddededeyneetdeesseesdssdssesasesesessekkkkkkkkkkk 274
                 +  + e+e+ e+ee eded+e  +e    ++  e+ee+  +++++ l +++ ed d   ++ ++e++e+ d++ +s+s+ +s++++++++k+ + +k+k
  KKY14916.1 208 E-IELEDEEREQEEYEDEDEEGVGEveyVSDLGEDEEDLDEDFEDwLGGESGEDYD---DSASDEDEEQTDQEADSSSDPDSHDDEENNTKPMPGTKRK 302
                 5.222233333333333333333335555566667777778888855556666666...3333333444444444444444444443332222222222 PP

       BUD22 275 kakakkvt 282
                 + ++++++
  KKY14916.1 303 RPSTQPPQ 310
                 33333332 PP

>> PYC_OADA  Conserved carboxylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.0   6.4e-05      0.16      87     138 ..     176     225 ..     155     248 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.4e-05
                 HHTTSS---SS---HHHHHHHHT.-----S-GGGG---.-HHHHHHHTTTTS CS
    PYC_OADA  87 llkGelGkppggfpeelvkkvlkgeepitsrpadslepedleklrkeleeka 138
                 l  G +G  p +++e ++k+v++g e  ++ ++ +le+e  e++++e e++ 
  KKY14916.1 176 LRSGAYGDRPLNVEEGVWKRVMRGLERAEKGEEIELEDE--EREQEEYEDED 225
                 457********************9888555555556664..46666666543 PP

>> TFIIF_alpha  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  19.2   6.9e-05      0.18     264     334 ..     212     295 ..     111     331 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.9e-05
                  XXXXXXX.XXXXXXXXXX.XXXXXXXXXXXXXXXX.............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  TFIIF_alpha 264 sdddadeydsddGddegr.EldyisDdsasendpe.............eredkkseEeeekkeieqdedeeekeeekkeeegkls 334
                  +d++  +++ +d d+eg  E+ y+sD +++e+d +             +  d +s+E+ee++++e  +++ + ++ ++ee++   
   KKY14916.1 212 EDEEREQEEYEDEDEEGVgEVEYVSDLGEDEEDLDedfedwlggesgeDYDDSASDEDEEQTDQEA-DSSSDPDSHDDEENNTKP 295
                  455555557777777774388888888888888775455555544443333333333333333222.222222222222222222 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  25.4   0.00038      0.98     268     451 ..     150     335 ..     121     340 .. 0.38

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00038
       Nop14 268 RtKteEElakeekerLeklEeeRlkRMrge.................edeeeeeekkkkkkke..........asaDdldddfvleeeeeeeefglgkg 339
                 R  t E +a+  ++  +  E+e + R r                                  +          ++ +d + ++++ e+e+ee  g+g+ 
  KKY14916.1 150 REETRERKAEAAAKVERAIERELIDRLRSGaygdrplnveegvwkrvM--------------RgleraekgeeIELEDEEREQEEYEDEDEE--GVGEV 232
                 444555555555555555555555555544444433333222221110..............122111111111112212221111112222..22222 PP

       Nop14 340 lkataeeeeeededdfeedddlveseseeeeeeeeedeeeeedeeeeeeeeededdlsdleseeeeeedeleeel....leeekkaaeekkekkkkkkk 434
                      ++++e++ed +e+ +d    es e+        +++ ++    e+ee++d++ d +s+ ++ +de ++++    +++++ +++  +++k+k ++
  KKY14916.1 233 EY--VSDLGEDEEDLDEDFEDWLGGESGEDY-------DDSASD----EDEEQTDQEADSSSDPDSHDDEENNTKpmpgTKRKRPSTQPPQARKRKPTA 318
                 21..112222222222222222222222111.......111111....111112222222222334444434444443222222222222333355555 PP

       Nop14 435 seekakeelpytfpcPe 451
                   ++ + e+ y  ++P+
  KKY14916.1 319 GGARPRVEIEYETEAPQ 335
                 55666778888888887 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   8.6    0.0048        12     240     333 ..     203     293 ..     141     324 .. 0.44

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0048
        SAPS 240 ekkgeeivkerDevrerlleeltseeealedvs.....deaskeesaesedltdkdedvsleesksakd.....................enkesdese 312
                  +kgee ++ +De+re+ + e+ ++ee++ +v+             ++                    +                     +++++de++
  KKY14916.1 203 AEKGEE-IELEDEEREQEEYED-EDEEGVGEVEyvsdlG-------ED--------------------EedldedfedwlggesgedyddSASDEDEEQ 272
                 233333.444555555555443.3333333333222220.......22....................0222233333333332222212122222222 PP

        SAPS 313 sdtaeesseededdasseesa 333
                 +d++ +ss++ ++++ +e+++
  KKY14916.1 273 TDQEADSSSDPDSHDDEENNT 293
                 222222222222222222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1223  (0.0682135); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.50
# Mc/sec: 2034.85
//
Query:       KKY14917.1  [L=437]
Description: hypothetical protein UCRPC4_g06572 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.6e-62  208.3   0.0    1.4e-61  207.5   0.0    1.4  1  TYW3         Methyltransferase TYW3


Domain annotation for each model (and alignments):
>> TYW3  Methyltransferase TYW3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.5   0.0     8e-66   1.4e-61       2     212 ..      50     372 ..      49     373 .. 0.95

  Alignments for each domain:
  == domain 1  score: 207.5 bits;  conditional E-value: 8e-66
                 HHHHHHHHH.......HHHHHCCHC-GGGHHHHHHHHC-SSEEEEEEES-EEEEE............................................ CS
        TYW3   2 rKakiLeeLsvpd...tdkspkGsvDekirelideinsledlvTtSSCsGRvsvflegrk....................................... 58 
                 +K++iL+ L++p    +d+spkGsvDe+ir+lideins e+lvTtSSC+GRvsv+leg+k                                       
  KKY14917.1  50 KKQNILSTLNTPIseyHDRSPKGSVDEGIRDLIDEINSIEGLVTTSSCAGRVSVYLEGEKggeeeeeeedldrevgggggavlegeedreeteqddddd 148
                 8*********999999*************************************************************************9999999999 PP

                 ..................EESSTT-STT-EEEEEESS--........-HHHHHHHHCS--..................SSEEEEEEE--EEEEEESSHH CS
        TYW3  59 ...........saeaeeeaaksggkkgggkwlfvsHdpv........keeellaelfgleeeegsaksseseee....erlilfkfePmILHvlcrsle 134
                            s+ +++++a +ggk++gg+wlfvsHdp+        ++ + ++ lfgl+++ +s+ +s s+      +rli+++feP+ LH+lc+s++
  KKY14917.1 149 degggggitsqSKPRKRTTAAAGGKGNGGRWLFVSHDPLpfpppettTSPHPYHDLFGLTPQPESQVTSPSDPVpssrRRLIRLQFEPLLLHILCASTS 247
                 99999999988778999****************************9999999*******9887776666555447888********************* PP

                 HHHHHHHHHHHCT-TT-EEEEECTT........................EEEEEEE.---EEEEEEE.......................STS---HHH CS
        TYW3 135 sAqkllsaAleaGfreSGivslkkk........................kvivair.sglklevpig.......................kellvseey 185
                 +A + l+ A ++GfreSG++sl  +                        ++i+a+r  gl ++++ig                       + +lv e+y
  KKY14917.1 248 HAIPPLTSAHTSGFRESGLQSLPPTqpttksksksqsqsqsqsqsqrhhHPILALRtFGLTFQSVIGyylspspssssnghqkpqpleeyH-SLVPESY 345
                 *********************99999*************************************************************9754.******* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHC- CS
        TYW3 186 lkllvklanerfeenkkrierfeealk 212
                 l+l+++  n+rf en kr+erf+eal+
  KKY14917.1 346 LSLMIHEINQRFIENGKRRERFREALR 372
                 *************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 2788.52
//
Query:       KKY14918.1  [L=365]
Description: hypothetical protein UCRPC4_g06573 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.051   12.3   1.8      0.078   11.7   1.8    1.2  1  DUF935    Protein of unknown function (DUF935)
        1.2    8.6   5.4        5.1    6.6   0.5    2.2  2  Drf_GBD   Diaphanous GTPase-binding Domain
          5    7.4   6.5       0.52   10.6   1.7    1.7  2  DUF4634   Domain of unknown function (DUF4634)


Domain annotation for each model (and alignments):
>> DUF935  Protein of unknown function (DUF935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.8   1.3e-05     0.078     387     461 ..      54     127 ..      32     139 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.3e-05
      DUF935 387 lGlrvpqsevrdklglpepeedeevlkaaesaepeaaaapaalaakaaaalaaaaaaeaaeqdaldaladealee 461
                 l  + +qs ++++l ++ p ++++vl++a+++++ea +++ +++++a ++l+++a+++a ++++ ++l++ea ++
  KKY14918.1  54 LKTQTKQSAFQKTLAMKRPVDGKTVLDMATKKKQEAVEQA-NRTNQAVKNLTSKARNNAGTDEESEDLVEEADRD 127
                 5567899***********************9999999999.5555555567778888888888888888887665 PP

>> Drf_GBD  Diaphanous GTPase-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.5   0.00086       5.1      29      84 ..      77     132 ..      52     138 .. 0.83
   2 ?    4.3   0.4    0.0045        27      23      83 ..     224     283 ..     218     302 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00086
     Drf_GBD  29 allalpiekKwqlvvqdkkkkakkeeklsksksksneeespesyvkklkddslkek 84 
                  +l + ++kK++ v+q + +++  ++ +sk ++++  +e +e++v++   d+   +
  KKY14918.1  77 TVLDMATKKKQEAVEQANRTNQAVKNLTSKARNNAGTDEESEDLVEEADRDPWVGT 132
                 56678899*****************999*****************99888876655 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0045
     Drf_GBD  23 peekreallalpiekKwqlvvqdkkkkakkeeklsksksksneeespesyvkklkddslke 83 
                 +++++++ ++ +ie+K +l+ q  +  +k   + ++++   ++e  p+s+  +lk +++k+
  KKY14918.1 224 KDDEKRQPASTDIERKTKLIKQIFSSPSKVS-SSHNTTLPVQQEYEPQSPTAHLKPKPIKS 283
                 678999999*************999888777.55666666777788888888888888776 PP

>> DUF4634  Domain of unknown function (DUF4634)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.7   8.8e-05      0.52      19      99 ..      24     106 ..      18     122 .. 0.75
   2 ?   -2.3   0.2      0.84     5e+03      71     100 ..     254     285 ..     238     304 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.8e-05
     DUF4634  19 yedeerleeddyyqvvyyytvtPnyddfs.anftvdysifesedrlnr.ldkevteavettisleteradhqkpvtvkpvtme 99 
                  +d  r+ ed++y ++  yt    y +++  +   + s f+    ++r +d +++  + t+ + e+ ++ ++   +vk +t +
  KKY14918.1  24 ADDLYRMVEDEFYDIAQKYTSHLHYAEYQrLKTQTKQSAFQKTLAMKRpVDGKTVLDMATKKKQEAVEQANRTNQAVKNLTSK 106
                 567779********************98725677899**********977777776666666655555555555566665544 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.84
     DUF4634  71 teavettisleteradhq..kpvtvkpvtmet 100
                   + +tt+ +++e + ++    +  kp++ ++
  KKY14918.1 254 SSSHNTTLPVQQEYEPQSptAHLKPKPIKSNA 285
                 44555555444443333300333344555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1391  (0.0775838); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 2298.92
//
Query:       KKY14919.1  [L=911]
Description: putative wd g-beta repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 5809.61
//
Query:       KKY14920.1  [L=261]
Description: putative rna annealing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-15   55.0   0.0    8.6e-15   54.3   0.0    1.4  1  RRM_1            RNA recognition motif. (a.k.a. RRM, RBD, or 
    2.1e-07   31.4   4.1    2.1e-07   31.4   4.1    2.8  3  FoP_duplication  C-terminal duplication domain of Friend of P
    0.00023   21.0   0.1    0.00041   20.1   0.1    1.4  1  RRM_occluded     Occluded RNA-recognition motif
  ------ inclusion threshold ------
      0.021   14.9   0.0      0.038   14.1   0.0    1.4  1  RRM_7            RNA recognition motif
       0.85   10.4   7.5        5.2    7.9   1.0    2.5  2  Gly-rich_Ago1    Glycine-rich region of argonaut
        9.3    5.9   6.7        5.5    6.7   0.4    2.0  2  QWRF             QWRF family


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   2.9e-18   8.6e-15       1      69 [.      71     140 ..      71     141 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 2.9e-18
                 EEEESETTTSSHHHHHHHHHT.TSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFsk.fGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 ++V++Lp+dvte ++ke+F+k +G++k++ + ++++g s+g a + F++ ++A+kA ++lng+ ++++++
  KKY14920.1  71 IVVSGLPTDVTEAQIKEYFQKsVGSVKRVIITYNQHGVSRGSAQIYFAKYDAAAKAAKELNGMLVDKKPM 140
                 79**************************************************************999876 PP

>> FoP_duplication  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       1.4   4.3e+03      68      75 ..       4      11 ..       2      16 .. 0.70
   2 ?   -0.4   3.9       0.6   1.8e+03       4      31 ..      16      43 ..      12      61 .. 0.45
   3 !   31.4   4.1     7e-11   2.1e-07      19      62 ..     181     225 ..     161     231 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.4
  FoP_duplication 68 kLDaeLDs 75
                     kLD+ LD+
       KKY14920.1  4 KLDQSLDE 11
                     67777775 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.6
  FoP_duplication  4 grrarrggggrggrrgrgrggrggrggr 31
                     +r+a+r+ ++rg++ g+  g+     g+
       KKY14920.1 16 RRQANRKVARRGAKPGKATGTTPAPAGG 43
                     4444455555555544444444432222 PP

  == domain 3  score: 31.4 bits;  conditional E-value: 7e-11
  FoP_duplication  19 grgrggrggrggrgrgrggrggrkkkkpltkeeLDaeLDaYmg...k 62 
                      +  ++grggr  rgrgr+ r+    ++++t+eeLD+e+ +Ym+   +
       KKY14920.1 181 KDAAAGRGGRATRGRGRKARTP--GRPKKTAEELDQEMTDYMSasaP 225
                      3344556666666666666666..9*****************94443 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   1.4e-07   0.00041       4      69 ..      71     141 ..      68     147 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.4e-07
  RRM_occluded   4 isllplsDtvnkariralveekegeikkivLvpdheG.....AivefkdekiagkasLaLdgsefegkklr 69 
                   i + +l+  v++a+i++ +++  g++k++++  +++G     A + f++  +a+ka+ +L+g+  ++k ++
    KKY14920.1  71 IVVSGLPTDVTEAQIKEYFQKSVGSVKRVIITYNQHGvsrgsAQIYFAKYDAAAKAAKELNGMLVDKKPMK 141
                   67789999***********************998876666669********************99998776 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.3e-05     0.038       2      24 ..      69      91 ..      68     118 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.3e-05
       RRM_7  2 rkvFvGGlPiDiteeelkatfke 24
                 k+ v GlP+D+te+++k+ f++
  KKY14920.1 69 SKIVVSGLPTDVTEAQIKEYFQK 91
                599****************9986 PP

>> Gly-rich_Ago1  Glycine-rich region of argonaut
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   1.0    0.0017       5.2      26      88 ..      29      91 ..      14      97 .. 0.78
   2 ?    5.7   0.8    0.0084        25      24      76 ..     189     238 ..     167     254 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0017
  Gly-rich_Ago1 26 grgGsggrgvpsggpsrppvPELHQAtqaqyqavvvqpspseagsssqpaevstaqvaqqfqq 88
                   + g  +g++++++g  +++v     At+a   a+ + p  s+   s  p++v  aq+++ fq+
     KKY14920.1 29 KPGKATGTTPAPAGGIKKTVKHAKSATKAVPSAPAPGPKESKIVVSGLPTDVTEAQIKEYFQK 91
                   223334555555566677***********99999999999*********************97 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0084
  Gly-rich_Ago1  24 gggrgGsggrgvpsggpsrppvPELHQAtqaqyqavvvqpspseagsssqpae 76 
                    g+   G+g+++  +g p++ ++ EL Q ++    a+  +p ++  g++  pa 
     KKY14920.1 189 GRATRGRGRKARTPGRPKK-TAEELDQEMTDYMSAS--APNTEANGNAAAPAA 238
                    3445566677777777777.9999999887766665..566666676666654 PP

>> QWRF  QWRF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.4    0.0018       5.5      56     128 ..      14      85 ..       2     106 .. 0.63
   2 ?    2.7   1.1     0.029        86      40      90 ..     161     222 ..     109     252 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0018
        QWRF  56 ssprsranslarggsaralsPsklssstsspsrglespsrprsssslkvss..assgkgvasvls.faadvrrgkk 128
                 s++r+ +    r+ ++r + P+k++ +t +p+ g+++  +  +s++  v+s  a   k+++ v+s + +dv+  + 
  KKY14920.1  14 STRRQAN----RKVARRGAKPGKATGTTPAPAGGIKKTVKHAKSATKAVPSapAPGPKESKIVVSgLPTDVTEAQI 85 
                 3333332....22389**********9999****977777777766666655744444444444314566655554 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.029
        QWRF  40 ssk.vkskkssldsaplssprsransla....rgg...saralsPsklss...stsspsrgl 90 
                   +  ++ k + +sa++s+p++ a++++    rg+   ++ +  P+k +    + ++  ++ 
  KKY14920.1 161 GERiSANAKAQPKSATASKPKDAAAGRGgratRGRgrkARTPGRPKKTAEeldQEMTDYMSA 222
                 23323333555556677777777666666444332122444444544333444222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 1727.12
//
Query:       KKY14921.1  [L=226]
Description: putative snf7 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.8e-23   80.8  14.6    1.4e-22   80.1  14.6    1.2  1  Snf7           Snf7
  ------ inclusion threshold ------
        0.2   12.0   4.7       0.91    9.9   0.4    2.7  3  DUF4172        Domain of unknown function (DUF4172)
        3.4    8.3  11.7        4.2    8.0   0.2    3.5  4  MerR-DNA-bind  MerR, DNA binding


Domain annotation for each model (and alignments):
>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1  14.6   2.3e-26   1.4e-22       6     169 ..      24     200 ..      20     204 .. 0.89

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 2.3e-26
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-.........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Snf7   6 Lrkaerkldkkqeslekkikkleaelkklakkgn.........kdralllLKqkkryekqldqldnqlanleqvslaienlksnkevlnamkqgakamk 95 
                 Lr ++rkld+ + +l+   +k++  + +  k  +          +  ++++K++ r +kq ++l +++a+l +v++++ ++ s+ ++  ++k ++++mk
  KKY14921.1  24 LRSQMRKLDRDINQLKVLDQKTKTYIVQASKRSQrnpsqakqaAAETRIFAKELLRVRKQSARLHTSKAQLASVQMQVTEAFSMRKIEGSLKASTAIMK 122
                 899***********99999999999977777766677888555666699************************************************** PP

                 HHHHCTCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTT-.GGTTHHHHHHHHHHHHHHHHHCSH....HHHHHHHTXX CS
        Snf7  96 amnkkvdidkidklmdeiedqmekaeeisEalsrsldda.deedEeeleaeLdaLeqelgdeell...desvklpevP 169
                  +n  v+++++  +m+e++++++ka++++E++s+ l +   e ++ee e+e+d++++e+++ +l      ++k+p+ P
  KKY14921.1 123 DVNTLVKLPELSGTMQELSRELMKAGIVEEMVSDMLPNDeLEGEDEEAEEEVDKVLSEVLQGKLGkapVAEEKMPQQP 200
                 ************************************77678889999*************999666666666777666 PP

>> DUF4172  Domain of unknown function (DUF4172)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.8   1.1e+04      31      50 ..      23      42 ..      14      51 .. 0.61
   2 ?    3.6   0.1     0.014        84      35      65 ..      83     113 ..      62     125 .. 0.74
   3 ?    9.9   0.4   0.00015      0.91      30      67 ..     131     168 ..     116     183 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.8
     DUF4172 31 rllGklealgfelreealle 50
                 l  ++++l+ + ++  +l+
  KKY14921.1 23 LLRSQMRKLDRDINQLKVLD 42
                45556666666665555554 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.014
     DUF4172  35 klealgfelreealletlteevvksseIEGe 65 
                 ++++l +++ + a++++ ++e+ +  +IEG 
  KKY14921.1  83 QSARLHTSKAQLASVQMQVTEAFSMRKIEGS 113
                 4566777778889999999999999999996 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00015
     DUF4172  30 GrllGklealgfelreealletlteevvksseIEGekL 67 
                  +l G +++l+ el ++ ++e ++++++   e+EGe  
  KKY14921.1 131 PELSGTMQELSRELMKAGIVEEMVSDMLPNDELEGEDE 168
                 689********************************975 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.2    0.0007       4.2      30      58 ..      11      41 ..       2      44 .. 0.81
   2 ?    4.8   1.2    0.0068        41      31      64 ..      61      96 ..      52      97 .. 0.79
   3 ?   -3.3   0.0       2.3   1.4e+04      51      59 ..     136     141 ..     123     146 .. 0.52
   4 ?    0.8   0.1      0.12   7.4e+02      49      65 .]     208     224 ..     205     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0007
                   TTTBHHHHH..HHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 30 rappcqdvr..allarklaeleeriaeLqal 58
                   ++p++q+++  all+ ++ +l++ i++L+ l
     KKY14921.1 11 PDPAAQKRKcdALLRSQMRKLDRDINQLKVL 41
                   56666666677*****************987 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0068
                   TTBHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 31 appcqdvr..allarklaeleeriaeLqalraeLaa 64
                   ++++q++   ++ a+ l +++++ a+L   +a+La+
     KKY14921.1 61 SQAKQAAAetRIFAKELLRVRKQSARLHTSKAQLAS 96
                   44444444458***********************86 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.3
                    HHHHHHHHH CS
  MerR-DNA-bind  51 riaeLqalr 59 
                        +q+l 
     KKY14921.1 136 T---MQELS 141
                    2...33333 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.12
                    HHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind  49 eeriaeLqalraeLaal 65 
                    e + a L+ +r +L+al
     KKY14921.1 208 EDQEASLADMRGRLEAL 224
                    789999*******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1463  (0.0815996); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 1414.16
//
Query:       KKY14922.1  [L=202]
Description: putative hsp90 associated co-chaperone [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-06   28.6   0.2    3.5e-06   27.9   0.2    1.4  1  CS        CS domain
  ------ inclusion threshold ------
       0.11   13.0   0.0       0.18   12.2   0.0    1.5  1  PIH1_CS   PIH1 CS-like domain


Domain annotation for each model (and alignments):
>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.2   3.9e-10   3.5e-06      11      76 .]      25      92 ..       9      92 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 3.9e-10
                EEEEEEE-TTCTTTTTCEEEEEETTEEEEEE....TS.CEEEEECEBSS-BETTTEEEEEETTEEEEEEEB CS
          CS 11 eVvvtiyvkkvnikkkdvkvefkerslkvki....gk.eklliegeLfgpIdpeesswtieskkveitLkK 76
                 +++ti v++v  + k++k+++k+++l++      +k  + l+ + +f++Id+e+s+ + +++ +e++L+K
  KKY14922.1 25 YIYLTISVPDV--SPKSLKLDLKPTKLTFTGtsdtKKtTYHLDLD-FFDEIDVENSKTHHTARDIEVILRK 92
                5899******9..*************9999887755555555554.***********************99 PP

>> PIH1_CS  PIH1 CS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     2e-05      0.18      22      80 ..      14      76 ..       5     127 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2e-05
     PIH1_CS 22 er.skkenvpkelaieielPllksikevklrvgerrlel....eskkakyfLslkLpYpvdedk 80
                +r sk++ + +++ ++i +P++ s k  kl++++++l      ++kk  y L+l++  ++d ++
  KKY14922.1 14 QRsSKDDAAKNYIYLTISVPDV-SPKSLKLDLKPTKLTFtgtsDTKKTTYHLDLDFFDEIDVEN 76
                56577999999***********.9**************9999888889****999877776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1289.68
//
Query:       KKY14923.1  [L=1176]
Description: hypothetical protein UCRPC4_g06578 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.49
# Mc/sec: 7189.44
//
Query:       KKY14924.1  [L=472]
Description: putative aldehyde dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.6e-125  416.7   0.0   1.2e-124  416.4   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family
    7.2e-06   25.3   0.0    6.3e-05   22.2   0.0    2.0  2  LuxC      Acyl-CoA reductase (LuxC)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  416.4   0.0  1.3e-128  1.2e-124       9     462 .]       8     465 ..       2     465 .. 0.96

  Alignments for each domain:
  == domain 1  score: 416.4 bits;  conditional E-value: 1.3e-128
                 EEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS..-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH CS
      Aldedh   9 ievinPatgeviakvpaataedvdaavaaAkeafkawakl..paeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelae 105
                 + +i+P+t+++i +  aa ++d+  + a A+ a+++++k   +++ R+ei+ k+ +ll e+++ela+ +t ++G p++ + +e++ a++  +y  + a 
  KKY14924.1   8 LTTISPITNKPILRRVAAPPQDIALMPALAQTAYRSFRKShpTLASRQEIVTKFLKLLGEKQDELAQELTEQMGRPISYTPKEIATAVKRGEYLNSIAP 106
                 6799*******************************99887225689***************************************************** PP

                 HHSEEEEEE.C.TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH CS
      Aldedh 106 klegevlps.s.egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealve 202
                 ++ +  +p  + +g + ++++eP+Gvv+++ +WN+P l+++ +l+pa++aGN+v+lKP+++tp ++ ++ +lf +aglP++v+++ +       ea+v+
  KKY14924.1 107 EVLDAPVPGtEeKGFKRYIKKEPVGVVLVLFAWNYPYLILVNSLIPAILAGNAVILKPSPQTPSIVEHVQRLFLAAGLPPKVIQYFHSGSLINIEAIVR 205
                 *666556664369*************************************************************************99777778***** PP

                 -TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-T CS
      Aldedh 203 hpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgdp 301
                 +p+v+++ ftGs++ g  ++kaaa+++ +v lElGGk+p+ +  daD   a+e+iv ga++n+GQ C+a++r++v+ ++yd f+e++++ +++ kvgdp
  KKY14924.1 206 SPNVNHICFTGSVAGGLSVQKAAADRIVNVGLELGGKDPAYIRGDADAAWAAEEIVDGAIFNSGQSCCAIERVYVHADVYDSFIEEVKKVLSSYKVGDP 304
                 *************************************************************************************************** PP

                 TSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT.E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEE CS
      Aldedh 302 ldedtdvGPliseaqlekvekyveeakeegaklllGge.reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaa 399
                 ld++t++GP++s+++ + + +++++a ++ga   +  + + ++ + +g+fv+Pt+l++vt+dm+++q+E+FGPV++v+k++++eeai+++Nd+e+GL+a
  KKY14924.1 305 LDKSTHIGPVVSKRSKDAILQQIKDALAAGAVDETPANeTFDNLPTEGNFVKPTLLTGVTQDMSVMQDETFGPVIPVTKVSSDEEAIRLMNDSEFGLTA 403
                 ***********************************8887889999****************************************************** PP

                 EEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 400 gvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 +++tkd++  e+++e++eaG+v +N+    +++  +++G+k+Sg G + ++ g+e+++++k++
  KKY14924.1 404 SIWTKDVAVGEQLTEQVEAGTVFVNRADFPSPDL-AWTGWKNSGKGVTLSRFGFEQFVKLKSI 465
                 ***************************9999999.************************9986 PP

>> LuxC  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   7.1e-09   6.3e-05      70     139 ..     106     180 ..      66     214 .. 0.88
   2 ?    0.9   0.0     0.021   1.9e+02     216     276 ..     251     317 ..     221     344 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 7.1e-09
        LuxC  70 peiLdeflktke....ksyekaqprglvlhvlsgNvpllp.vmsilqglLvknvnllkvSssdpflaaallksla 139
                 pe+Ld +++  e    k+y+k  p g+vl +++ N p l+ v s++ ++L++n+ +lk+S + p ++  + + ++
  KKY14924.1 106 PEVLDAPVPGTEekgfKRYIKKEPVGVVLVLFAWNYPYLIlVNSLIPAILAGNAVILKPSPQTPSIVEHVQRLFL 180
                 78999999655556789********************7762679******************9999988877665 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.021
        LuxC 216 ealdkaaeraAkDiivfdQqAClspqvvfvekdd.kieidefaeaLaa.....aLekrarilpkakl 276
                  +++ aae++ +  i+   q+C +   v+v +d     i+e+++ L++      L+k+++i p + +
  KKY14924.1 251 ADAAWAAEEIVDGAIFNSGQSCCAIERVYVHADVyDSFIEEVKKVLSSykvgdPLDKSTHIGPVVSK 317
                 46666677776666677789***********883134478888877642222257777777775544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.34s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 2820.63
//
Query:       KKY14925.1  [L=301]
Description: putative vegetative cell wall protein gp1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.047   13.5   0.1      0.094   12.5   0.1    1.5  1  BH4       Bcl-2 homology region 4


Domain annotation for each model (and alignments):
>> BH4  Bcl-2 homology region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   5.3e-06     0.094       2      13 ..     205     216 ..     205     217 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.3e-06
                 GG-HHHHHHHHH CS
         BH4   2 rldnReLVvDYv 13 
                 +ldnR+ VvD++
  KKY14925.1 205 SLDNRDMVVDFI 216
                 79*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2045.94
//
Query:       KKY14926.1  [L=394]
Description: putative glycerol uptake [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-32  111.0   6.9    1.1e-31  110.3   6.9    1.3  1  MIP              Major intrinsic protein
  ------ inclusion threshold ------
        0.2   11.4   2.4        0.6    9.9   2.4    1.8  1  Phage_holin_2_3  Bacteriophage holin family HP1


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   6.9   1.2e-35   1.1e-31       3     205 ..      47     270 ..      45     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 110.3 bits;  conditional E-value: 1.2e-35
                 CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCSSSSTTSS...HHHHHHHHHHHHHHHHHHHHHHHCHT-S-SHHHHHHHHHTTSSSHHHHHHHHHH CS
         MIP   3 ssvkflravlAEflatlllvfigvgsalnvkkkvsslaslvs...vtleavalafglalavlvylaagiSGaHlNPavTlallvarkisllrailYiva 98 
                 s+ + lr+++AE+ + +++vf g++s++++  +++s + l++   ++l ++ +af++++a ++ + a  SG+H+NPa+T+ +++ + ++ ++++ Yi +
  KKY14926.1  47 SRPRILRECMAEATGVFFYVFPGIASVASFTLNIESSTGLPTtvfGSLFQIGWAFAIGIAFAIITCAPTSGGHFNPAITICFAIWQGFPWKKVPHYIFS 145
                 567789****************************9999888777799**************************************************** PP

                 HHHHHHHHHHHHHHHCHHH..................HHHTTTTSSSSS.TTSSHHHHHHHHHHHHHHHHHHHHHHCSTTSSSSTCHGHHHHHHHHHHH CS
         MIP  99 QllGaivaaallklltkgl..................esraglfanslk.pglsagqalvvEiiltfvLvlvvfaltddkrkvslgelaplaigllval 178
                 Q+ Ga++a +ll +++ +                     +a+  +++++ +++++g  +  E+++  ++ +v++a  d+ + + + + apl+ig+++ +
  KKY14926.1 146 QIFGAFIAGLLLMGMYWPEisalkqadiaaegtavfnGGAASILCVFPNaNQTNQGFLFLQEFFVDSFIGIVIWACLDPANPFVSPTSAPLTIGMAYGV 244
                 ****************9999*************9887566677777776256788888999********************9998889*********99 PP

                 HHHHHHHHHST-SSHHHHHHHHHHHTH CS
         MIP 179 iilvgipltGaamNpArslgpavvlnk 205
                 ++   +    ++ N+Ar+lg ++v+  
  KKY14926.1 245 MVWGFA-ANTISTNLARDLGTRIVAAI 270
                 876554.5569************9865 PP

>> Phage_holin_2_3  Bacteriophage holin family HP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.4   6.7e-05       0.6      12      40 ..      85     113 ..      71     115 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 6.7e-05
  Phage_holin_2_3  12 SavavvlGllsLseWAiviGIicgvvTfl 40 
                      ++ ++v+G l    WA  iGI+++++T++
       KKY14926.1  85 GLPTTVFGSLFQIGWAFAIGIAFAIITCA 113
                      56688999766667*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2639.27
//
Query:       KKY14927.1  [L=234]
Description: putative short chain dehydrogenase reductase family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-15   55.9   0.0    4.9e-15   55.5   0.0    1.1  1  adh_short     short chain dehydrogenase
    5.8e-15   55.5   0.0    8.3e-15   55.0   0.0    1.2  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
     0.0028   17.6   0.0     0.0041   17.0   0.0    1.3  1  KR            KR domain
     0.0049   16.3   0.0     0.0058   16.0   0.0    1.1  1  DUF1776       Fungal family of unknown function (DUF1776)


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   1.1e-18   4.9e-15      26     183 ..      17     184 ..       8     193 .. 0.92

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 1.1e-18
                 EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH....SSESEEEE---S.S--SSGGGCSHHHHHHHHHHHTHHHHHHHHHH CS
   adh_short  26 kvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl....gkldvLvnNAGi.tgsgpfselseeewervievNltgvflltrav 119
                 +v+v++r+++  + +++ + + g + + i++D +d+++v++++++++++l     kl + + N+G    ++pf +l+e+e+ + ++   +g+fl ++a+
  KKY14927.1  17 TVAVLARNPSSYQDLVEDITKSGGHCIGISTDCSDSNSVKNAFSQIKAELsktnSKLTAAIYNTGGkFVRKPFLKLTEDEFTAGYHSSTKGAFLFSQAA 115
                 6889**********************************************888888999999999977899**************************** PP

                 HHHHH....HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEE.EEEESSBS CS
   adh_short 120 lpaml....kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvn.avaPGlvd 183
                 lp +l    +q+  + ++++ +a+ +++++++ ++    a ++l++slake+ p+g+ v  ++  G++d
  KKY14927.1 116 LPLLLeatdAQHPPTLIFTGATAAIKSSPMLSTFAHVSYAKRSLSQSLAKEFGPKGVHVAhTIIDGIID 184
                 ***998888899999*******************************************96145555555 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   1.9e-18   8.3e-15      20     183 ..      17     192 ..      13     221 .. 0.85

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 1.9e-18
                   EEEEEESSGGH.HHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG...CSS-GGGH-HHHHHHHHHHHTHHHHHHHH CS
  adh_short_C2  20 evvltdlneea.kkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapk...lkgpfletsreefdraldvnlyslfllak 111
                   +v++  +n ++ ++ ve++++++g+ + + +D +d ++v+++++++++++ k +  + +a + +    +++pfl+++++ef    + +++++fl+++
    KKY14927.1  17 TVAVLARNPSSyQDLVEDITKSGGHCIgISTDCSDSNSVKNAFSQIKAELSKTNSKLTAAIYNTGgkfVRKPFLKLTEDEFTAGYHSSTKGAFLFSQ 113
                   5788888888889*********999999**********************77666554444443356679*************************** PP

                   HHHH.HCTSC.....CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEE.EEEEE--BHCTGGGGST CS
  adh_short_C2 112 aalp.lmkeg.....gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRv.NavspgpikTlaasgik 183
                   aalp l++++       ++ +  ++a ++ p  +  + +  a  +l+++lA+e+gpkg+ v +++  g+i+ + +++ k
    KKY14927.1 114 AALPlLLEATdaqhpPTLIFTGATAAIKSSPMLSTFAHVSYAKRSLSQSLAKEFGPKGVHVaHTIIDGIIDIPRTKQWK 192
                   ****6444446777888*******************************************967999****999888765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   9.2e-07    0.0041      24     123 ..      14     115 ..       4     154 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 9.2e-07
                 HS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS....S--.-EEEE---------TTT--HHHHHHHHTTTTHHHH CS
          KR  24 garhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee....ppi.kGvihaAgvlrdklleemtaedleqvlapKvkGaw 117
                 g  ++++l+R+  ++ + ++l++ ++++g ++  ++ D sd+++v++++++ikae     +++ + ++++ g +  k++ ++t++++++ +++  kGa 
  KKY14927.1  14 GPGTVAVLARN--PS-SYQDLVEDITKSGGHCIGISTDCSDSNSVKNAFSQIKAELsktnSKLtAAIYNTGGKFVRKPFLKLTEDEFTAGYHSSTKGAF 109
                 56688999999..33.44669*******************************998754443441567888899999*************9999999998 PP

                 HHHHHT CS
          KR 118 nLhell 123
                    ++ 
  KKY14927.1 110 LFSQAA 115
                 877765 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.3e-06    0.0058      60     203 ..      51     186 ..      24     215 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.3e-06
     DUF1776  60 dpssieasleefaqslesphvalpgakphvlrLkgvilvPslsyptgpietiplsswaselnerllspiltlqallplltsra.kqkakiivvnpsiss 157
                 d++s+++++++++ +l+++          + +L++ i     ++   p+ ++++++++   +++    +l++qa lpll +++  q++ +++++    +
  KKY14927.1  51 DSNSVKNAFSQIKAELSKT----------NSKLTAAIYNTGGKFVRKPFLKLTEDEFTAGYHSSTKGAFLFSQAALPLLLEATdAQHPPTLIFTGATAA 139
                 5678888888888888876..........6689999999999***********************************987655589999****999999 PP

     DUF1776 158 slnlpfhapEalvssalsalfevLkrelrphnidvtqikL.Gnldla 203
                   + p  ++ a vs a ++l ++L++e +p++++v +  + G++d+ 
  KKY14927.1 140 IKSSPMLSTFAHVSYAKRSLSQSLAKEFGPKGVHVAHTIIdGIIDIP 186
                 999********************************997666888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 1517.41
//
Query:       KKY14928.1  [L=1530]
Description: putative sulfite reductase beta subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-51  173.4   0.1    1.4e-44  151.4   0.0    2.8  3  NIR_SIR       Nitrite and sulphite reductase 4Fe-4S domain
    7.1e-29   99.5   0.0    1.5e-14   53.6   0.0    2.8  2  NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half 
    1.5e-28   99.8   0.0    3.2e-28   98.7   0.0    1.6  1  Flavodoxin_1  Flavodoxin
    1.7e-08   34.5   0.0    4.1e-08   33.3   0.0    1.6  1  POR_N         Pyruvate flavodoxin/ferredoxin oxidoreductase, 
  ------ inclusion threshold ------
       0.15   12.0   0.0       0.54   10.2   0.0    2.0  1  GerD          Spore germination GerD central core domain


Domain annotation for each model (and alignments):
>> NIR_SIR  Nitrite and sulphite reductase 4Fe-4S domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.9   6.8e+03      66      95 ..     340     366 ..     329     378 .. 0.72
   2 !  151.4   0.0   3.9e-48   1.4e-44       4     154 ..    1112    1273 ..    1109    1276 .. 0.95
   3 !   18.8   0.0   2.5e-07   0.00089      51     144 ..    1426    1508 ..    1380    1510 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.9
                 SEEEEEEEETTCEEEEEEEE--B-SSSTC- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR  66 DiglvgvkkdekeigfnilvGGglgrthga 95 
                 D++ vgv  ++    ++ +vGG+l+   ++
  KKY14928.1 340 DLANVGVITAR---LYRPWVGGNLSSLIPN 366
                 55555555533...68999****9987766 PP

  == domain 2  score: 151.4 bits;  conditional E-value: 3.9e-48
                  SCCCCCCSTCCCTBSS-SS-T.....HHHHHHHHHHHCTCCCCTSSSS-BEEEEESSTCSTSSGGGSSEEEEEEEETTCEE..EEEEEE--B-SSST CS
                  xxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
     NIR_SIR    4 nlrnvtlcpgaglceeallDt.....telakaiedelepeygetylPrKfKiavsgcpnncvaveanDiglvgvkkdekei..gfnilvGGglgrth 93  
                  +  +++l+p +++++e++l        ++a ++ ++ ep yg+tylPrKfKi ++++p+n+ +v+a+Digl++++++ ++   gfn+  GGg+g+th
  KKY14928.1 1112 QRVSDHLLPSTTAYHEIWLKDddgknVQVAGNAVQDHEPLYGPTYLPRKFKITIAVPPRNDTDVYAHDIGLIAIQDPVTKKlqGFNVTAGGGMGTTH 1208
                  67799**************887888889999999*******************************************999999************** PP

                  C-TCEEEEE....EEEEGGGHHHHHHHHHHHHHHHS-CSSGGG-SHHHHHHHHHHHHHHHHHHHC CS
                  xxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR   94 gakktsarl....gfvpeeevlevveaivevyrdhgdrknrkkeRlkylverlGvekFrekveee 154 
                  ++kkt++rl    gfvp++ +  v+e+i+ v+rdhgdrknrk++Rlky+++++G e F++kv+e 
  KKY14928.1 1209 NNKKTYPRLgytmGFVPTDVTHIVCEKIMLVQRDHGDRKNRKHARLKYTMDDMGDEVFKAKVQEL 1273
                  *******************9999***************************************875 PP

  == domain 3  score: 18.8 bits;  conditional E-value: 2.5e-07
                  EEESSTCSTSSGGGSSEEEEEEEETTCEEEEEEEE--B-SSSTC-TCEEEEEEEEEGGGHHHHHHHHHHHHHHHS-CSSGGG-SHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR   51 avsgcpnncvaveanDiglvgvkkdekeigfnilvGGglgrthgakktsarlgfvpeeevlevveaivevyrdhgdrknrkkeRlkylverlGv 144 
                   ++gcpn c++  +  ++ vg   + +   +n+++GGg   ++ +k   a   +++ee v+e+++a+ + y+    ++ +++e+++++  r G+
  KKY14928.1 1426 RMTGCPNGCARPWVAEVACVG---KAPH-TYNLYLGGGYHGQRLNKLYRA--SIMEEE-VIEIMKAMFTRYA----KERNEREHFGDWTIRAGI 1508
                  679*********997666655...4445.69*******987766655444..455555.*************....************999986 PP

>> NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   4.1e-18   1.5e-14       8      68 ..    1017    1076 ..    1011    1077 .. 0.94
   2 !   42.8   0.0   9.4e-15   3.4e-11       3      69 .]    1299    1368 ..    1299    1368 .. 0.94

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 4.1e-18
  NIR_SIR_ferr    8 gyymvrlrvpnGritaeqlraladiaekygsgeirlTtrQnlqlhgvpeedleeileeLae 68  
                    ++ m+r+r+p+G  t++q+ ++ +ia ++g+ +++lTtrQ++q+hgv +++l++ ++++++
    KKY14928.1 1017 SF-MIRCRLPGGVSTPDQWLKMDAIASAHGNETMKLTTRQTFQFHGVIKSKLKPAMQAINK 1076
                    45.******************************************************9987 PP

  == domain 2  score: 42.8 bits;  conditional E-value: 9.4e-15
  NIR_SIR_ferr    3 qkdgkgyymvrlrvpnGri.tae...qlraladiaekygsgeirlTtrQnlqlhgvpeedleeileeLaea 69  
                    qkd  g+++++l+++nGri +++   + ++l ++a k  +ge+rlT +Q+l+  ++p++d +++ ++L+++
    KKY14928.1 1299 QKDERGMNHFTLFIENGRIeDTAdfpMRTGLKELA-KLNIGEFRLTGNQHLIMSNIPDSDKAKVASLLKKY 1368
                    7899999************97778***********.7888****************************986 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0   8.9e-32   3.2e-28       1     143 []     789     931 ..     789     931 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 8.9e-32
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEEC CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglGd 97 
                   il++S+ Gn+e++Ak+l+   +++g+++ v+ ++dy   ++++ +e++++++tsT+g+G++p+ng+ +f++  ++      d dls v ++vf+lGd
    KKY14928.1 789 ILFASDNGNAENMAKRLGNRGRARGLKTIVMAMDDYP--IEDLATEENVAIITSTAGQGEFPQNGR-TFWEHVKDA----ADLDLSSVHYSVFALGD 878
                   89***********************************..67*************************.999999998....699************** PP

                   TTSSS.......TTHHHHHHHHHHHHTTCEEESSSEEEETTSTHGHHHHHHHH CS
  Flavodoxin_1  98 sayen.......FcaagkkldekleelGaerllkllegdednqegqeeafrkW 143
                   s y++       +++ gk +d +++ lGa+ l++ + gd+++ +g ++ +++W
    KKY14928.1 879 SHYWPrkedkhyYNKPGKDVDARFSFLGAKPLCEIGLGDDQDPDGPQTGYQEW 931
                   *****************************************99*999999999 PP

>> POR_N  Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.1e-11   4.1e-08      59     171 ..      77     180 ..      71     207 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.1e-11
                 TT-EEEEEEECCHHHHCCCCHHHHHHTT--EEEEEEEEE-STTBEEEEE--TTCHHHHS---EEEE-SSHHHHHHHHHHHHHHHHHCTSEEEEEEEHHH CS
       POR_N  59 aGaraaTaTSgqGllLmienlglaageelPvvivvvaRalpstglsirtdqsDlmaardtglivlasenvqeafdlalvAfnlAekvrvPvivlfDgfl 157
                 aG ++ +++S++ ll +i++l+  a    Pvvi+v+   l+++    ++d s++ a+r+ g+  l se++qea d+al A++lA++    vi++fD   
  KKY14928.1  77 AGRLVSVTSSSSILLAAIPHLYRLA--NSPVVIHVA---LDQQ---SYPDYSEISAIRQCGFTFLQSETIQEAQDIALSAHALAVRSGKGVIHFFDPRN 167
                 89999999999999999****9987..67*****95...6666...688***********************************************644 PP

                 H.HEEEEEEC-SGG CS
       POR_N 158 lshevekvelpdee 171
                    e +++  + +e
  KKY14928.1 168 S-AEDDPIAPEGRE 180
                 3.555555555555 PP

>> GerD  Spore germination GerD central core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00015      0.54       3      67 ..     722     783 ..     720     788 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00015
        GerD   3 ldqeevkkaiektltsekgkkfwkklfkdpkfaealaksmkkenekllkdLmkDpeYqkmlleil 67 
                 ld+e +k+ +++ l  ++  ++ + +  +p+fa++l++s  +e +kl k+  kD+ Y + l  ++
  KKY14928.1 722 LDSERIKQELQDFLKRDN--QLTQLMRRKPEFAATLSESYGSEIRKLQKRRAKDA-YEQLLEGLF 783
                 789999999999997765..455566789**********************9996.666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.00u 0.30s 00:00:01.30 Elapsed: 00:00:00.51
# Mc/sec: 9072.08
//
Query:       KKY14929.1  [L=920]
Description: hypothetical protein UCRPC4_g06584 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.51
# Mc/sec: 5479.52
//
Query:       KKY14930.1  [L=102]
Description: putative 10 kda heat shock mitochondrial [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-28   98.1   0.0    2.5e-28   98.0   0.0    1.0  1  Cpn10     Chaperonin 10 Kd subunit


Domain annotation for each model (and alignments):
>> Cpn10  Chaperonin 10 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.0   1.4e-32   2.5e-28       2      93 .]       9     100 ..       8     100 .. 0.98

  Alignments for each domain:
  == domain 1  score: 98.0 bits;  conditional E-value: 1.4e-32
                 -EE-TTEEEEEESGG-TTS-TT----HHHHHSEEEEEEEEE-T........TS-TTS--T-EEEEEGGGTSS-GG---.EEEEEGGG--EE- CS
       Cpn10   2 ikplgdrVlvkraeeeekteggiilpdsakekpeqGvVvaVGegarnekgedvplevkvgdkVlfpkyagtkvkvdgkeylilkekdIlavi 93 
                 + pl drVlv+r + e+kt++gi+lp+s+ ++ +q++V a G+g  +++g+++p++v+ gdkVl p+y+g+ vkv ++e+ ++++++Ila+i
  KKY14930.1   9 LAPLLDRVLVQRIKPETKTASGIFLPESSVKEINQATVLATGPGGLDKDGKRIPMGVSAGDKVLIPQYGGSPVKVGEEEFSLFRDSEILAKI 100
                 78****************************************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.51
# Mc/sec: 606.32
//
Query:       KKY14931.1  [L=665]
Description: putative fad monooxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-69  234.8   0.0      2e-69  234.5   0.0    1.1  1  FAD_binding_3   FAD binding domain
    9.8e-38  129.8   0.0    1.7e-37  129.0   0.0    1.3  1  Phe_hydrox_dim  Phenol hydroxylase, C-terminal dimerisation d
    0.00046   19.9   0.0      0.022   14.3   0.0    2.2  2  DAO             FAD dependent oxidoreductase
     0.0013   18.1   0.0      0.032   13.5   0.0    2.7  3  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0065   16.7   0.0      0.018   15.3   0.0    1.8  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.051   13.2   0.0      0.096   12.3   0.0    1.4  1  ApbA            Ketopantoate reductase PanE/ApbA
      0.059   13.9   0.0       0.13   12.9   0.0    1.6  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      0.063   12.9   0.1        0.1   12.1   0.1    1.3  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
       0.18   10.8   0.0       0.31   10.0   0.0    1.3  1  Lycopene_cycl   Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.5   0.0     1e-72     2e-69       2     348 ..       9     367 ..       8     368 .. 0.90

  Alignments for each domain:
  == domain 1  score: 234.5 bits;  conditional E-value: 1e-72
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE......CCCCCEEEEEHH CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealyne......lsdtpkaradle 91 
                    +d++IVGaGp+Gl+l+  Ls+ G +v  ++ r   + ++radg+++r++e+l++lGl++ i a++ p  + + a++ +      +++t    +  +
     KKY14931.1   9 YDIVIVGAGPVGLLLSVCLSRWGYKVKHIDNRPVPTATGRADGIQPRSLEILKNLGLKRHIFAND-PARVYEVAFWDPqddgtgIHRT---GTWAS 100
                    689**************************************************************.8888888888884444444443...22222 PP

                    ....CHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCC....CCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEE CS
  FAD_binding_3  92 ....lesspervtvypqteleriLvehaeerglqvrfktevesleqdeeg....vtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefege 179
                        ++++++ ++++ q  +er+ ++++e+ g+ +++   ++ + +d+++    v+ e+++ +++ +etvrakYl   +G+rS vr++lg++++  
     KKY14931.1 101 cpkfIDARYPFTALLHQGLIERVFIQDLEKSGTVLQRPWTITDFVNDGTNptypVKVELKNLDSNVIETVRAKYLFSGEGARSFVREKLGVKMSHL 196
                    556788********************************99999999999833334555668889999*************************9998 PP

                    EEEE.EEEEEEEEEEC-SCCCTTCCEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGS.CCCHHHHHHHHHHHHHHTTSSCEE.EEEEEEEEE CS
  FAD_binding_3 180 etvy.eagvldvlfdadlsdiveplvlilsaesrgvmviPlentlerfyvqvearaekeer.sekfteeevkarlreivgektldv.eieevsawt 272
                    + +   +gv+d +++++++di  + + i+s++ + +mviP+en+ +r y+q+  ++e + + ++  t eev +++ +i++++ l+  ++e++s+++
     KKY14931.1 197 DPIShVWGVMDGVVRTNFPDIKMK-CTIHSDSGS-IMVIPRENNMVRLYIQIASSDEPDFDpRKTATVEEVQEAAIRIMKPYHLEWdRVEWYSVYP 290
                    8875159************99999.999887776.5****************9999888774777899*****************999******** PP

                    EEEEEESSSEET.TEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 273 vaqrvaekyrkg.rvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvdf 348
                    ++q +a+ky+ + rvf+ GD +H+h+P++GqG+Nta  Da+n awk+ +v +G A++++L++Ye+er+ +a+ +++f
     KKY14931.1 291 IGQGIADKYTLDqRVFMGGDCCHTHSPKAGQGMNTAFHDAINFAWKMHLVESGMANRSILESYETERKYIAETLLNF 367
                    ************************************************************************99887 PP

>> Phe_hydrox_dim  Phenol hydroxylase, C-terminal dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   0.0   8.5e-41   1.7e-37       1     166 []     428     609 ..     428     609 .. 0.91

  Alignments for each domain:
  == domain 1  score: 129.0 bits;  conditional E-value: 8.5e-41
  Phe_hydrox_dim   1 FtsGvgveYqpsllvaevkskqnlatg................lrpGrrlpsakVvrvaDanpvdlqdeipsdGrfRilvfagdlsdaeqksrls 79 
                     FtsG+gv+Y+p+++        n++++                  pGr +++a+V+rv Dan+v+l++eip++G+fRi++f g  s+++ +++l+
      KKY14931.1 428 FTSGFGVAYKPNIF--------NISPShpcgqnplfitspdakSIPGRIMHPANVTRVTDANTVHLENEIPFNGSFRIFIFGGRHSSSTPSKALQ 514
                     9*************........34444444445888888999999***************************************999989***** PP

  Phe_hydrox_dim  80 aladalsskesflsrftpada...........dvdsvievllihaaprkeieledlPevlrpfdeklgldy.ekvyvddes..yhe.d.gaaYek 158
                     +la+ l+s++sf+ +f ++ +           +++++++++li +apr++ie+++lP+++r        dy ++vy+dd +  +++    aa++k
      KKY14931.1 515 DLAEGLESPTSFYGKFAHPVHqgvdtyhephnPHSAFFTLALILNAPRSQIEISSLPSIFR--------DYdQHVYADDIWdqRVPeArAAAHAK 601
                     ******9999******988778***************************************........************8766645456**** PP

  Phe_hydrox_dim 159 yGidkkrG 166
                     +G+++++G
      KKY14931.1 602 MGFNEDEG 609
                     ****9987 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.1e-05     0.022       1      43 [.      10      52 ..      10     107 .. 0.87
   2 ?    3.3   0.0     0.026        51     245     312 ..     218     291 ..     169     324 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.1e-05
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEE CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgl 43
                d+vi+G+G +Gl     L+r g  V  ++ +  +   a+gr+ g+
  KKY14931.1 10 DIVIVGAGPVGLLLSVCLSRWGykVKHIDNR-PVP-TATGRADGI 52
                9******************************.666.8****9987 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.026
                 E....EEETTTTEEEEEETTS..EEE..EEESSEEETTCSSTSCSHHHHHHHHHHHHHHS.GGGCGEEE.EEEEEEEE CS
         DAO 245 e....tdddgrgvyvtprkdg..rvl..vGgtadeesgdddpevdeedidellealrklf.Pqlgdvlr.kwaGlrpl 312
                 +    ++ d++++ v+pr+++  r++  + +++  e ++d+     + ++e+ ea+ +++ P   +  r +w+ ++p 
  KKY14931.1 218 KmkctIHSDSGSIMVIPRENNmvRLYiqIASSD--EPDFDP--RKTATVEEVQEAAIRIMkPYHLEWDRvEWYSVYPI 291
                 233348889999******988554552234444..444444..34457888888888888666555555589999993 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.6e-05     0.032     144     198 ..      10      65 ..       2      71 .. 0.78
   2 ?   -0.4   0.0      0.26   5.2e+02     187     271 ..     122     217 ..     113     217 .. 0.72
   3 ?   -0.1   0.0      0.21   4.2e+02     266     281 ..     300     314 ..     288     328 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-05
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHHHHHHHHHHHTTE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveardrll.raldkelsaaleealekeGv 198
                  +iv+vG+G++G+ l+  l++ g++v  ++ r+ +   +  + ++ +  e l++ G 
   KKY14931.1  10 DIVIVGAGPVGLLLSVCLSRWGYKVKHIDNRPVPTaTGRADGIQPRSLEILKNLGL 65 
                  68999999999999999999999999999998887666667777777777777665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.26
                  HHHHHHHHHTTEEEEESCEEEEEEETTE......EEEEEETTSCE.EEESEEEE-S-EEES-HHCSHCCT-EEEETTEE.....E--TTSBESSTTE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxx RF
  Pyr_redox_2 187 aaleealekeGvevklgtsvkeidgnge......klevvledgee.idadlvvvavGvrpstelleeklglelderggi.....vvdeflrtnvpgi 271
                  +   + lek+G  ++   +++++ ++g+      k+e+++ d ++ + ++   +  G  +++  + eklg+++ + + i     v+d   rtn p+i
   KKY14931.1 122 RVFIQDLEKSGTVLQRPWTITDFVNDGTnptypvKVELKNLDSNViETVRAKYLFSGEGARSFVR-EKLGVKMSHLDPIshvwgVMDGVVRTNFPDI 217
                  56667889999999999999999999999988655555555555565667777778888888888.9999999666655544557777777777766 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.21
                  ESSTTEEE-GGGCTEC CS
                  xxxxxxxxxxxxxxxx RF
  Pyr_redox_2 266 tnvpgiyaiGDvaggk 281
                  t ++ +++ GD++  +
   KKY14931.1 300 TLDQRVFMGGDCC-HT 314
                  47899*******9.22 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   8.8e-06     0.018       1      32 [.      13      44 ..      13      72 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8.8e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlG 32
                   IvGaG  Gl++   L++ g++v  +++r+ + 
     KKY14931.1 13 IVGAGPVGLLLSVCLSRWGYKVKHIDNRPVPT 44
                   9***************************9875 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.8e-05     0.096       1      41 [.      11      52 ..      11      69 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.8e-05
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGl 41
                i+i+GaG +G ll ++L++ g++v  i++++   ++ + +G+
  KKY14931.1 11 IVIVGAGPVGLLLSVCLSRWGYKVKHIDNRPvPTATGRADGI 52
                89*************************999977766666666 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.5e-05      0.13       2      35 ..      11      44 ..      10      71 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.5e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                +v+vG+G +gl l   l++ g kV+ +++++ + 
  KKY14931.1 11 IVIVGAGPVGLLLSVCLSRWGYKVKHIDNRPVPT 44
                8****************************99877 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   5.2e-05       0.1       3      32 ..      11      40 ..       9      53 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.2e-05
                    EEEE--STTHHHHHHHHHHCTSEEEEE-S- CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigvDid 32
                    i+++G+G vGl  +++l++ g +v  +D+ 
      KKY14931.1 11 IVIVGAGPVGLLLSVCLSRWGYKVKHIDNR 40
                    99*************************975 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00016      0.31       1      38 [.      10      45 ..      10      49 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00016
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsllf 38
                   D+v++GaGp gl+l   l  ++ g kv  i+  p +  
     KKY14931.1 10 DIVIVGAGPVGLLLSVCL--SRWGYKVKHIDNRPVPTA 45
                   9*****************..********9998887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.49
# Mc/sec: 4116.73
//
Query:       KKY14932.1  [L=541]
Description: putative mfs [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-21   75.6  22.3    3.2e-21   75.6  22.3    2.5  3  MFS_1     Major Facilitator Superfamily
    0.00024   19.5   0.3     0.0005   18.5   0.1    1.6  2  OATP      Organic Anion Transporter Polypeptide (OATP) family
  ------ inclusion threshold ------
        4.3    7.1  14.0       0.25   11.2   5.6    2.8  3  VIT1      VIT family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.057   3.4e+02     147     166 ..      65      84 ..       4      98 .. 0.57
   2 !   75.6  22.3   5.4e-25   3.2e-21      43     328 ..     146     471 ..     143     492 .. 0.85
   3 !   11.1  18.1   2.3e-05      0.14      17     172 ..     361     531 ..     358     538 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.057
       MFS_1 147 slgWravfyilaivsllafv 166
                  l Wr++f +la++++  + 
  KKY14932.1  65 RLRWRVIFTALALILFSEIA 84 
                 22333333333333333322 PP

  == domain 2  score: 75.6 bits;  conditional E-value: 5.4e-25
       MFS_1  43 lgaavaslplGrlsdrfGrrrvlllglllfalg.lllll..fa...sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGai 135
                 l+ ++ ++p+G l+d++Gr++v++l++ +  l  ++l++  +      l ++ +l +  G g  ++++++ +++ad++++e+r+ a+  +++ + ++  
  KKY14932.1 146 LVGLACAIPYGNLADKIGRKPVFILSIPAVYLYsAFLITimWFelpLRLIWISALFFALGGGPPVIIALVWTIVADVANEEQRSTAFMQIGVVSMAAEF 244
                 5667899*******************99888885555555422333333358888889999999***********************99999999999* PP

       MFS_1 136 lgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.....................kgtgpaplvpawkallkdpvlw... 210
                 ++ +++g+l+s+  W a+f+ l+++++ ++++  ll+pe++     k  ke+e                     ++ +++ l++ +k+++    +    
  KKY14932.1 245 VAGAVSGYLTSYNPWLAMFVSLGLLCASVLII--LLFPETKGLAIQKGAKEREshelddlgvdsvdrsrypmssNRFVRRTLAK-LKSIRQESGFIldd 340
                 *****************************776..9998888888888888888********************99999999999.99999999885599 PP

       MFS_1 211 illialllfffgfsg...lltllplylqevlgls....glllaglllallalvgailallagrlsdr...lgrrrrlllallllllaalglallavtss 299
                 + +++lll+ff++ +   + +++  y+ +++g++    ++l+++ ++  ++l++ il  +a++l  +    g+r+  +la ++++l+++g +  +++ +
  KKY14932.1 341 SSVFVLLLTFFVYKIsrgAGAFFVQYISKRYGWTiahaNYLTSVKAFFNIFLFTTILPYVASWLGEKkgiKGNRKEFILAKVSIILLFIGTVGQGLAPN 439
                 89999999999***********************99998888887777777777788999999997768888899999999999999999999999988 PP

       MFS_1 300 avllllvlvliGfglgfv...fpsllalasdl 328
                  vll+ +l++ ++g+gf+   ++++++l++++
  KKY14932.1 440 IVLLITFLITQTMGAGFAyqiRAIITSLVQSH 471
                 89999999998889999967777777777665 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 2.3e-05
       MFS_1  17 palplalaedlgispseigllltl.....yalgaavaslplGrlsdrf...Grrr.vlllglllfalg.lllll.fasslwlllvlrvlqGlgagalfp 104
                 +++ +++++ +g++ + ++ l+++      +l++ ++ +++++l+++    G r+ ++l+ + + +l+ ++++  +a+++ ll+ + + q +gag+++ 
  KKY14932.1 361 AFFVQYISKRYGWTIAHANYLTSVkaffnIFLFTTILPYVASWLGEKKgikGNRKeFILAKVSIILLFiGTVGQgLAPNIVLLITFLITQTMGAGFAYQ 459
                 55666*******************9998888899************98445688867775554444443366667779999************777777 PP

       MFS_1 105 agaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllll 172
                 +  a+i+ ++   + +r +  +++   +G + + ++++ +   +g      W ++ y+l + ++l++ ++ +++
  KKY14932.1 460 IR-AIITSLVQSHQVARLYVGITILETAGHLAAGPVSAGVF-KWGlqiggpWVGLPYLLLGSTFLLAAFGTWWV 531
                 66.5666666666******9999999999966666666555.45667888999998999999999888888886 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       0.2   1.2e+03     328     356 ..     227     255 ..     223     258 .. 0.85
   2 !   18.5   0.1   8.3e-08    0.0005     216     342 ..     259     388 ..     251     432 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.2
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 328 saseAnlltGvvvipgaalGillgGllvk 356
                 ++s+A + +Gvv++ +  +   ++G+l++
  KKY14932.1 227 QRSTAFMQIGVVSMAAEFVAGAVSGYLTS 255
                 57889999999999999999999999876 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 8.3e-08
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 216 WlgflilgvllllaaiplffFPkelpkkkeerakkkseeesae....kkeekkkkeksksseeeelkslkdfpkalkrllknpifllvilssvfeillv 310
                 Wl ++++  ll+ +++++++FP+++  + ++ ak+++++e  +    + ++++   +s++  +++l +lk++ +    +l +   ++v+l + f + + 
  KKY14932.1 259 WLAMFVSLGLLCASVLIILLFPETKGLAIQKGAKERESHELDDlgvdSVDRSRYPMSSNRFVRRTLAKLKSIRQESGFILDDS-SVFVLLLTFFVYKIS 356
                 99*9********************44333333333333332223222222222222222222366777777666555555544.445666678999999 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 311 aGfitFlpkylEtqFslsaseAnlltGvvvip 342
                  G  +F  +y+ ++++ + ++An lt v + +
  KKY14932.1 357 RGAGAFFVQYISKRYGWTIAHANYLTSVKAFF 388
                 *************************9865544 PP

>> VIT1  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.21   1.2e+03     165     184 ..      65      84 ..      60     152 .. 0.84
   2 ?   11.2   5.6   4.2e-05      0.25     140     197 ..     197     263 ..     187     277 .. 0.85
   3 ?   -1.4   1.5       0.3   1.8e+03     140     188 ..     386     437 ..     360     469 .. 0.63

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.21
        VIT1 165 alvvsiavtllalllfGavk 184
                  l++ +++t+lal+lf  + 
  KKY14932.1  65 RLRWRVIFTALALILFSEIA 84 
                 58999999****99997655 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 4.2e-05
        VIT1 140 ssalsfliGgliPllpylfve.........svglalvvsiavtllalllfGavkalltgssklvsal 197
                 +sal+f++Gg  P++ +l+ +         ++++a++   +v+++a ++ Gav+++lt+ +++ +++
  KKY14932.1 197 ISALFFALGGGPPVIIALVWTivadvaneeQRSTAFMQIGVVSMAAEFVAGAVSGYLTSYNPWLAMF 263
                 799**************98777888887766999999999*********************988765 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.3
        VIT1 140 ssalsfliGgliPllpylfve......svglalvvsiavtllalllfGavkallt 188
                 + +  fl+  ++P ++  + e      ++++ +++    ++++ll++G v++ l 
  KKY14932.1 386 AFFNIFLFTTILPYVASWLGEkkgikgNRKEFILAK---VSIILLFIGTVGQGLA 437
                 555667777777777777766544433244444444...6777777787776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.49
# Mc/sec: 3337.78
//
Query:       KKY14933.1  [L=984]
Description: putative xap5 domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-64  218.7   0.0    5.1e-64  216.5   0.0    2.0  2  XAP5          XAP5, circadian clock regulator
    9.3e-20   69.9   1.7    1.7e-19   69.0   1.7    1.5  1  Fip1          Fip1 motif
     0.0051   17.1   0.6      0.012   15.9   0.6    1.6  1  DUF641        Plant protein of unknown function (DUF641)
  ------ inclusion threshold ------
      0.021   13.5   0.2      0.042   12.5   0.2    1.4  1  FapA          Flagellar Assembly Protein A
      0.026   14.9   1.9      0.046   14.1   1.9    1.4  1  zf-RING_2     Ring finger domain
      0.037   13.9   2.3       0.07   13.0   2.3    1.4  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
       0.05   13.6   4.3      0.097   12.7   4.3    1.4  1  zf-RING_5     zinc-RING finger domain
      0.079   13.0   1.5       0.17   11.9   1.5    1.5  1  DZR           Double zinc ribbon
       0.21    9.7   3.9       0.51    8.4   1.8    2.0  2  EzrA          Septation ring formation regulator, EzrA
       0.34   10.0   2.8        0.6    9.1   2.8    1.3  1  Atg14         Vacuolar sorting 38 and autophagy-related subun
          1    9.7   7.1       0.36   11.2   3.3    2.1  2  OmpH          Outer membrane protein (OmpH-like)
        4.6    7.5   7.3       0.71   10.1   2.5    2.2  1  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> XAP5  XAP5, circadian clock regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.5   0.0   3.4e-67   5.1e-64       1     221 [.     402     647 ..     401     651 .. 0.86
   2 ?   -2.1   0.4       1.8   2.7e+03      10      60 ..     737     774 ..     720     800 .. 0.45

  Alignments for each domain:
  == domain 1  score: 216.5 bits;  conditional E-value: 3.4e-67
        XAP5   1 kkkkkkkskLSFgdddeeeeeeeekakkkeeeekkeesekkeekekeeeeeekkkkkkkpnvdtsf.lpkaldkereekeaaereeLrkeflalqeavk 98 
                 kkkk  ks LSFgdd+eee+    k+++ + + ++++   + + e++e++++   ++++pn++ s+  pka++k+++++ea +r++Lrkefla+qea+k
  KKY14933.1 402 KKKKIVKSVLSFGDDEEEEQVPIGKSATITPKGSTSQ---TPQPESREQTTSPVPRRLTPNPTSSIpAPKAITKASLHAEALQRDALRKEFLAMQEAIK 497
                 789999******8877777644333333333333333...33334444445566778888877764256****************************** PP

        XAP5  99 aeeieitfvfydGsnirrpgGvvrvkkgdtiwlfLdkark.......................eklrkerrelarvsvddLmlvkedlIiPhhyefYdf 174
                 ++ei i+fvfydG+ni  pgG+v++kkg+++wlfL++ark                       ++++++r+e+ar+svddL++v++++I+PhhyefY+f
  KKY14933.1 498 NTEILIPFVFYDGTNI--PGGMVKIKKGEHVWLFLERARKvgadtgaagsgsgttagtggggsRTKNENRKEWARISVDDLICVRGEVIVPHHYEFYYF 594
                 ****************..********************************************9778999****************************** PP

        XAP5 175 ivnkargksg.pLFdvsedvrekk.....seekisdlegekddshatKvvdrr 221
                 i+nk   + g  LF++ +++++++     + + ++ leg++ d ++tKvvdrr
  KKY14933.1 595 IANKVPNPGGgLLFEYANTASKENsesilRIPGQDALEGKDADRTFTKVVDRR 647
                 ********999********9988788888888999*****************8 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.8
        XAP5  10 LSFgdddeeeeee..eekakkkeeeekkeesekkeekekeeeeeekkkkkkkp 60 
                 L Fg++  +ee++                  ++ ++k++++++++k  +++k 
  KKY14933.1 737 LQFGTKTLQEERNdlV---------------KQFQAKASRHAQTQKMYENLKN 774
                 4443322222211111...............1111111112222222222333 PP

>> Fip1  Fip1 motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   1.7   1.2e-22   1.7e-19       1      42 [.     143     184 ..     141     185 .. 0.94

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 1.2e-22
        Fip1   1 didldqleekpWrkpGaDisDYFNYGfdEetWkeYcekqekl 42 
                 d d+ + + kpWrkpG+Di+DYFNYGfdE+tW++Yc k +++
  KKY14933.1 143 DTDFPSESTKPWRKPGSDITDYFNYGFDEFTWASYCLKTQQM 184
                 67788889******************************9998 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.6   8.3e-06     0.012      19     107 ..     658     761 ..     652     779 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.3e-06
      DUF641  19 alkaAYvqLQeAhsPydpekiqaADkavvseLkklselkrlyrkkqkkkas..e..............aeeseleaeiqeqrsllktyeitvkkleael 101
                 +lk A ++LQ  h+P  +e+++  D+av + L+ + + k + ++   ++++  +              ae ++++++i+e++   kt++   ++l +++
  KKY14933.1 658 TLKLASANLQDRHCPACKESLSNPDDAVNTVLTPTEDYKTSVLSG-LDPNTimDllnsqmdrivkdanAEIENCQKKIEELQFGTKTLQEERNDLVKQF 755
                 79***************************************9996.44544453344455555555555555555555556656666666655555555 PP

      DUF641 102 kakdse 107
                 +ak s 
  KKY14933.1 756 QAKASR 761
                 555433 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   2.8e-05     0.042     323     428 ..     696     803 ..     683     825 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.8e-05
        FapA 323 kteievgldepelkekl.keleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeelesk......kee 414
                 kt +  gld +++++ l +++++ +++ ++e+e+++kki++l+         ++ +e+ + l ++ ++  ++ ++ ++ +++lk++++ +       ++
  KKY14933.1 696 KTSVLSGLDPNTIMDLLnSQMDRIVKDANAEIENCQKKIEELQFGT------KTLQEERNDLVKQFQAKASRHAQTQKMYENLKNKVRMSgipaaaLQS 788
                 788889***777777779*************************943......45669999999999999999999999999999999877666666444 PP

        FapA 415 a.kikvnkeiypgvk 428
                 a  i+ ++ + ++v 
  KKY14933.1 789 AdMIAQSRPVTYNVN 803
                 434444445665555 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.9   3.1e-05     0.046      16      44 .]     643     675 ..     632     675 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.1e-05
   zf-RING_2  16 vlllpCgHvfhreClerw.lrssst....CPlCr 44 
                 v+   C H+f+ +C++++ l+s +     CP+C+
  KKY14933.1 643 VVDRRC-HIFCIDCANTLkLASANLqdrhCPACK 675
                 333359.*******977643333336778****7 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.3   4.7e-05      0.07      21      47 ..     648     678 ..     637     680 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.7e-05
                 EEEEE-HHHHHHHHH.....TT-B-TTT--B- CS
  zf-C3HC4_3  21 gHlvlCeeCaekllk.....rkkkCpiCrrpi 47 
                 +H+ +C +Ca++l+      ++++Cp C+++ 
  KKY14933.1 648 CHI-FCIDCANTLKLasanlQDRHCPACKESL 678
                 477.*********76899**********9976 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   4.3   6.5e-05     0.097      21      43 ..     648     675 ..     644     676 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.5e-05
   zf-RING_5  21 gHifCekClkkll.....ekeavCpiCr 43 
                 +HifC +C+++l+      +++ Cp+C+
  KKY14933.1 648 CHIFCIDCANTLKlasanLQDRHCPACK 675
                 5****************999*******8 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.5   0.00011      0.17      12      40 ..     649     680 ..     643     685 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
         DZR  12 arfCseCgtklkavaa...edrCpsCgekvdp 40 
                  +fC +C ++lk ++a    ++Cp+C+e++++
  KKY14933.1 649 HIFCIDCANTLKLASAnlqDRHCPACKESLSN 680
                 67*********988889999********9765 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.069     1e+02     234     265 ..     168     199 ..     163     204 .. 0.78
   2 ?    8.4   1.8   0.00034      0.51      94     153 ..     718     777 ..     696     780 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.069
                 HHHHSTTS--SGGGSSSSSHHHHHHHHHHHHH CS
        EzrA 234 gykemkeegYaleelniekeieelekkieeil 265
                 g++e + + Y l+ +++ kei+e++++ e++ 
  KKY14933.1 168 GFDEFTWASYCLKTQQMPKEITEIKNQAESMK 199
                 66777788888889999999999888887765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00034
                 HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTHHHHHHHHHHHHHHHHT-- CS
        EzrA  94 ykfkkakkklaeleeeldeveekikkileelkelteseeknreeieklkekYrelrkkll 153
                   +k+a++++++ +++++e++  +k+++ee ++l+++ + + ++  + ++ Y++l++k++
  KKY14933.1 718 RIVKDANAEIENCQKKIEELQFGTKTLQEERNDLVKQFQAKASRHAQTQKMYENLKNKVR 777
                 55799***************************************************9985 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.8    0.0004       0.6      10     116 ..     649     779 ..     645     795 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0004
       Atg14  10 pfiCesClrng...............perlyelrerlaklksekeslkkkiekalegke...........eaeqledkiknkkakleelksliadlrer 82 
                 + +C  C++                 +e+l      +  +++  e  k+ +   l  ++            +++++++i+n+++k+eel+  +  l+e+
  KKY14933.1 649 HIFCIDCANTLklasanlqdrhcpacKESLSNPDDAVNTVLTPTEDYKTSVLSGLDPNTimdllnsqmdrIVKDANAEIENCQKKIEELQFGTKTLQEE 747
                 566777777666666666666666666678888888888888888888888888888889999999999999999************************ PP

       Atg14  83 lqelkdklsqlkkeieekkkklaklsdklkkRrs 116
                  + l ++ +   +++++++k  + l++k+  R+s
  KKY14933.1 748 RNDLVKQFQAKASRHAQTQKMYENLKNKV--RMS 779
                 ********************999999998..555 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       3.8   5.7e+03      28      44 ..     349     365 ..     326     374 .. 0.55
   2 ?   11.2   3.3   0.00024      0.36      21      98 ..     709     776 ..     705     808 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.8
                 HHHHHHHHHHHHHHHHH CS
        OmpH  28 fkklqaeleakekelqk 44 
                 +k++++ le+k ke q+
  KKY14933.1 349 RKRRADVLEQKIKEAQD 365
                 23333333333333332 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00024
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  21 qeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqellkpildki 98 
                 ++ l+++  ++ ++ +a+ ++ qk++eelq       +++ ++e +++++++q+k+++   + qk      +++ +k+
  KKY14933.1 709 MDLLNSQMDRIVKDANAEIENCQKKIEELQFG-----TKTLQEERNDLVKQFQAKASRH-AQTQKMY----ENLKNKV 776
                 55677777778888888888888888888733.....4444555555555555522222.2222222....2233333 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.5   0.00048      0.71      28      77 ..     724     773 ..     708     788 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00048
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCH CS
  Seryl_tRNA_N  28 vdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevk 77 
                    +e+   ++k +elq+ +  lq+erN l k+++ +  ++++++++ +  k
    KKY14933.1 724 NAEIENCQKKIEELQFGTKTLQEERNDLVKQFQAKASRHAQTQKMYENLK 773
                   567888999************************99999866666554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (984 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1387  (0.0773607); expected 358.6 (0.02)
Passed bias filter:                      895  (0.0499191); expected 358.6 (0.02)
Passed Vit filter:                       178  (0.00992805); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.52
# Mc/sec: 5694.94
//
Query:       KKY14934.1  [L=171]
Description: hypothetical protein UCRPC4_g06589 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       891  (0.049696); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.35s 00:00:00.89 Elapsed: 00:00:00.54
# Mc/sec: 955.55
//
Query:       KKY14935.1  [L=117]
Description: hypothetical protein UCRPC4_g06590 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.017   13.9   0.1      0.018   13.9   0.1    1.0  1  Herpes_UL17  Herpesvirus UL17 protein


Domain annotation for each model (and alignments):
>> Herpes_UL17  Herpesvirus UL17 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   9.8e-07     0.018     124     205 ..       5      87 ..       1     115 [. 0.57

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.8e-07
  Herpes_UL17 124 RlaipdgaeyrdllFtydeLlpegtrynadaerlralcrqllaytrlpaalpsaakeaaahleac.....apgafdeaaaearlkdd 205
                  + ++++++ ++++lF+y  +   +tr + d+er+r+l      yt+++ a +s   + a+ + +      a ++ de a++ +   +
   KKY14935.1   5 KTTVKGSELTTEMLFLYACIATSSTRLRPDVERVRQL----TGYTKSTVAKASVLFAKANSIIKEledsrAGPETDEEASKGAEPGK 87 
                  5566777799***********************9666....5555444444443333333333335655633333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 773.82
//
Query:       KKY14936.1  [L=177]
Description: hypothetical protein UCRPC4_g06591 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00019   20.8   3.3    0.00022   20.6   3.3    1.1  1  ORC6      Origin recognition complex subunit 6 (ORC6)
  ------ inclusion threshold ------
      0.014   14.7   2.4      0.016   14.5   2.4    1.1  1  CCDC71L   Coiled-coil domain-containing protein 71L
       0.11   12.1   6.2       0.12   11.9   6.2    1.1  1  VIR_N     Virilizer, N-terminal
        3.7    6.2   7.4        4.4    6.0   7.4    1.1  1  NPR3      Nitrogen Permease regulator of amino acid transport


Domain annotation for each model (and alignments):
>> ORC6  Origin recognition complex subunit 6 (ORC6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   3.3     5e-08   0.00022      52     185 ..      26     157 ..       5     174 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 5e-08
        ORC6  52 ekLkekldlpy.svkkiPlppkaykklldlfrqsLsnsssatstPskspsspst....dpkslrkqlfsTPtKsktlktalsasksssplkrrrklane 145
                  kL+ +++  y +++ +++++ ay ++++ +++    ++ a++ P +s +   t    +p++ + ++ +TP+K +++k       s   +k+r++ an 
  KKY14936.1  26 AKLTPDYEAVYqELEDCGTKDAAYWRFVRIMKE--YGMT-ASGQPIRSDRGGATtakaTPAKNKGKADTTPSKPDKSKAT----GSAGNPKKRKADANT 117
                 58888888888899*******************..4444.6688888777776677889999999999999999988887....455555558888888 PP

        ORC6 146 edgeeeeedapswvstsir.....dsrpeisrtlspskslgdesi 185
                 +d+e + + ++++v+++ +     d+++++      s  ++++++
  KKY14936.1 118 NDSEPKTPTKKAKVEKEEEfldygDEEDTE-----ASTIIKSNPF 157
                 888887777666666666554443222222.....2223333333 PP

>> CCDC71L  Coiled-coil domain-containing protein 71L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   2.4   3.5e-06     0.016     276     370 ..      63     161 ..      23     166 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.5e-06
     CCDC71L 276 aartlakaacaqakvakakkikakesvqarterkkqksssetvG.qKrkrae.eakelpakkkarlvpqsek.selgkg.tanllkfkaiKVdrkssDd 370
                 a+ + +++++ +a++aka+ +k+k+++ +  +  ++++ + ++G  K+++a+ ++++  +k+ +++  +++    l  g ++++  + +iK +  s Dd
  KKY14936.1  63 ASGQPIRSDRGGATTAKATPAKNKGKADTTPSKPDKSKATGSAGnPKKRKADaNTNDSEPKTPTKKAKVEKEeEFLDYGdEEDTEASTIIKSNPFSEDD 161
                 5666788999999***************99999999999999996355555514555556655554433333144555524455566777877666666 PP

>> VIR_N  Virilizer, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.2   2.7e-05      0.12     153     254 ..      64     168 ..      22     174 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.7e-05
       VIR_N 153 naspvrpeprePrtpelipaytgnvastpPpdddeeedaavpetveeekeensekredyleeesPeertslkaeekdseaereer......esseeier 245
                  ++p+r +  + +t++  pa +   a+t P + d+ +  a+ ++ +  k+ ++  + + +e++ P +++++++ee+  ++ +ee+       +s+ +++
  KKY14936.1  64 SGQPIRSDRGGATTAKATPAKNKGKADTTPSKPDKSK--ATGSAGN-PKKRKADANTNDSEPKTPTKKAKVEKEEEFLDYGDEEDteastiIKSNPFSE 159
                 5778888888899999999998889999997777766..5555555.56666666777799******************99999966666544455555 PP

       VIR_N 246 deeesdvre 254
                 d++++d ++
  KKY14936.1 160 DDDDDDEEG 168
                 555544444 PP

>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   7.4   0.00099       4.4      33     130 ..      65     170 ..      61     177 .] 0.49

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.00099
        NPR3  33 GlPvhvdedgkwrkskkkkkkskrkrssrskekkskesskksesssksess...eekksskeseeseekesneeeeeeededdeesek.......eeee 121
                 G P+  d  g   ++ +   ++++++  ++ +k +k++++ s ++ k++++   +++++ k+ +++++ e++ee  +  de+d+e+++       +e++
  KKY14936.1  65 GQPIRSDRGGATTAKAT--PAKNKGKADTTPSKPDKSKATGSAGNPKKRKAdanTNDSEPKTPTKKAKVEKEEEFLDYGDEEDTEASTiiksnpfSEDD 161
                 67888888886666644..33333333333333333333333333333333000333333333333334444444444444444444488888887777 PP

        NPR3 122 kedkkknlt 130
                 ++d+++ ++
  KKY14936.1 162 DDDDEEGME 170
                 788888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       942  (0.0525406); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 1118.42
//
Query:       KKY14937.1  [L=650]
Description: putative ankyrin repeat and btb poz domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-24   84.0   0.0    5.9e-13   49.0   0.4    2.8  2  BTB       BTB/POZ domain
    1.9e-07   31.2   0.2    0.00068   20.0   0.1    2.7  2  Ank       Ankyrin repeat
    3.3e-06   27.6   0.0    6.8e-06   26.6   0.0    1.5  1  Ank_2     Ankyrin repeats (3 copies)
    3.8e-06   27.3   0.0    8.6e-06   26.2   0.0    1.6  1  Ank_4     Ankyrin repeats (many copies)
    5.1e-06   26.7   1.7    1.9e-05   24.8   0.7    2.5  3  Ank_5     Ankyrin repeats (many copies)
    0.00014   22.0   0.9      0.071   13.7   0.1    3.0  2  Ank_3     Ankyrin repeat
     0.0014   18.8   0.0     0.0034   17.5   0.0    1.6  1  DUF3342   Domain of unknown function (DUF3342)


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   6.2e-11   1.6e-07       5      79 ..     136     206 ..     132     241 .. 0.82
   2 !   49.0   0.4   2.3e-16   5.9e-13      23     105 ..     352     434 ..     347     439 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 6.2e-11
                 HHHTTTS-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTSTTTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC- CS
         BTB   5 resgelcDvtlvvgdgkefkahkavLaarSpyFkalftskeieessvseielddvepeafealLefiYtgeleit 79 
                 re  +  D+t+    + +f+ hk++L+arSpyF++ ++ +   e  + +++ +   p+af++ ++ +Y gel+ +
  KKY14937.1 136 REYPKTADITVSSP-NDSFHLHKFILSARSPYFYEKLKAN--PETPSWKLP-SSLPPQAFGIAIKHLYLGELPRE 206
                 6777999*******.69***********************..444444675.9999************9999875 PP

  == domain 2  score: 49.0 bits;  conditional E-value: 2.3e-16
                 EEE-HHHHHHH-HHHHHHHTSTTTTTCCCE...EEEETTSGHHHHHHHHHHHHHSEEEC-CGGGHHHHHHHHHHHT-HHHHHHHHH CS
         BTB  23 fkahkavLaarSpyFkalftskeieessvs...eielddvepeafealLefiYtgeleitseenleelLaaadllqiprlkkacee 105
                 f++h+a L  rS+yF ++f+s  ++e++++   +i   d++pe++e++L f+Yt+++e+   e ++++L aadll i++lk+++  
  KKY14937.1 352 FPCHRAML-IRSDYFLTMFSSS-FKEAQNTehlQIIPIDCSPEVLEIVLTFLYTEKTEFG-LELAVDVLFAADLLFIEKLKTKAAV 434
                 78888877.69***********.56655555679999**********************8.********************99876 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0011       2.7       9      31 ..      46      69 ..      31      70 .. 0.91
   2 !   20.0   0.1   2.7e-07   0.00068       3      31 ..      73     104 ..      71     105 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0011
                HHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank  9 AatngkkriiklLL.hGAnlnald 31
                A+++g++ ++++ +  G n+na+d
  KKY14937.1 46 ACRRGDLKVCQEMImEGVNINARD 69
                8999**********99*******9 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 2.7e-07
                 BBHHHHHHHHTTHHHHHHHH.TTT.ST.TCBT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGA.nl.nald 31 
                 +TPL lA+ +g+ ++++lLL +GA +l nal+
  KKY14937.1  73 YTPLILASLCGNYEVVELLLeSGAlCLyNALN 104
                 9*******************99*978888887 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   2.7e-09   6.8e-06      30      77 ..      43      96 ..      22     120 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2.7e-09
       Ank_2 30 LhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekga 77
                L  A+++g+l++++ ++ +       d + +tpL++A+ +g++e+v+lLle+ga
  KKY14937.1 43 LCEACRRGDLKVCQEMIMEgvninaRDLYDYTPLILASLCGNYEVVELLLESGA 96
                455777777777777775444444333567777777777777777777777765 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   3.4e-09   8.6e-06       5      55 .]      43      92 ..      41      92 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 3.4e-09
       Ank_4  5 LhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55
                L  a+  g+l++++  +  g++ina+ + ++ t+l+ A + gn+e+++lLl
  KKY14937.1 43 LCEACRRGDLKVCQEMIMEGVNINAR-DLYDYTPLILASLCGNYEVVELLL 92
                667999********99988*******.***********************8 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0097        25      23      46 ..      46      69 ..      43      71 .. 0.93
   2 !   24.8   0.7   7.4e-09   1.9e-05       5      49 ..      62     107 ..      58     114 .. 0.84
   3 ?   -1.4   0.0       1.3   3.3e+03      31      55 ..     393     416 ..     390     417 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0097
       Ank_5 23 AakygaadvvrlLlargadlnltd 46
                A+++g + v+++++++g+++n++d
  KKY14937.1 46 ACRRGDLKVCQEMIMEGVNINARD 69
                9*********************98 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 7.4e-09
       Ank_5   5 gpadvnrldgggntpLhvAakygaadvvrlLl..argadlnltdsrG 49 
                 g +++n++d + +tpL++A+ +g+ +vv+lLl     + +n+ ++r 
  KKY14937.1  62 G-VNINARDLYDYTPLILASLCGNYEVVELLLesGALCLYNALNDRI 107
                 5.89****************************777777777777776 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.3
       Ank_5  31 vvrlLlargadlnltdsrG.ltaldl 55 
                 v+++ l     ++ +++ G ++a+d+
  KKY14937.1 393 VLEIVL--TFLYTEKTEFGlELAVDV 416
                 555555..666999*****9999997 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.1    0.0096        25       8      31 .]      45      67 ..      43      67 .. 0.93
   2 !   13.7   0.1   2.8e-05     0.071       2      27 ..      72      96 ..      71     111 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0096
       Ank_3  8 lAarsgnleivkfLlenkgadvna 31
                +A+r g+l++++ ++   g+++na
  KKY14937.1 45 EACRRGDLKVCQEMIM-EGVNINA 67
                69**************.8****96 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.8e-05
       Ank_3  2 GetpLhlAarsgnleivkfLlenkga 27
                 +tpL lA ++gn+e+v++Lle  ga
  KKY14937.1 72 DYTPLILASLCGNYEVVELLLE-SGA 96
                58*******************9.665 PP

>> DUF3342  Domain of unknown function (DUF3342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.3e-06    0.0034      15      95 ..     351     431 ..     345     433 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.3e-06
     DUF3342  15 dfrCaqdlLetemrYfeeiikryiseaqrleeidi.rvnCdlsifdWLmkyvkkkkrkltpenvvsillsssfLkmeeLvde 95 
                  f C++ +L+++  Yf  + +   +eaq++e+++i  + C  ++ + ++ ++  +k ++  e +v +l +++ L +e+L  +
  KKY14937.1 351 LFPCHRAMLIRS-DYFLTMFSSSFKEAQNTEHLQIiPIDCSPEVLEIVLTFLYTEKTEFGLELAVDVLFAADLLFIEKLKTK 431
                 599******987.8******************996379**************************************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.51
# Mc/sec: 3834.63
//
Query:       KKY14938.1  [L=342]
Description: hypothetical protein UCRPC4_g06564 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.5e-121  404.4   3.8    4.4e-89  299.6   0.4    2.0  2  Phage_F   Capsid protein (F protein)
  ------ inclusion threshold ------
       0.05   13.1   0.0      0.092   12.3   0.0    1.4  1  KNOX2     KNOX2 domain


Domain annotation for each model (and alignments):
>> Phage_F  Capsid protein (F protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.9   0.3     6e-35   5.4e-31     104     200 ..       8     102 ..       2     104 .. 0.97
   2 !  299.6   0.4   4.9e-93   4.4e-89     259     510 .]     102     340 ..     101     340 .. 0.99

  Alignments for each domain:
  == domain 1  score: 107.9 bits;  conditional E-value: 6e-35
     Phage_F 104 aPaggftegsiaDhfglltkva..nlrvkkllfraYnlIyNdyfrdenlqesvevnlgdltgddskedykLlraaklkdyftsaLPapqkglavelgig 200
                 +P+++++++ ++Dh+++l++++  +++++k+lf++Y++IyN+yf+++++++++e+n+++l++dd++++   +r+++lk+++t++LP p+++l+++++++
  KKY14938.1   8 TPLPTVNTTGYIDHAAFLGTINpdTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYG---FRCCHLKNIWTAPLP-PETELSRQMTTS 102
                 8*********************9*********************************************...***************.**********96 PP

  == domain 2  score: 299.6 bits;  conditional E-value: 4.9e-93
     Phage_F 259 aassitInsLraAialqhleeedarfgtRYveiikshfgvtsaDarlqRplylggssfsvsvndvdqtsstdsvsPqGnLaafstav.qtnkhlvtksf 356
                 +++si+I++L+aA+a++h+++e+++f++RY ++i+s++g+ts+Da+ +Rpl++++s+ ++s++dvd+t++t       +L++fs++v qt+kh+v+++f
  KKY14938.1 102 STTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDAD-NRPLLVMRSNLWASGYDVDGTDQT-------SLGQFSGRVqQTYKHSVPRFF 192
                 79********************************************.************************.......*********99********** PP

     Phage_F 357 v.EHgvilgLavvradltyqqglerlwsreqlry.Dly.dPal.anlgeqevsnkeiyvqgsavddekfgyqEryaeyRykpskvagkfrsnatesLds 451
                 v EHg++++La+vr+++t+++++++l+++++l+y D++ dP+l +nl+++e+s+k+++  +s+++++kf+++E+ ++yRy+ps+v+  +     ++L++
  KKY14938.1 193 VpEHGTMFTLALVRFPPTATKEIQYLNAKGALTYtDIAgDPVLyGNLPPREISMKDVF--RSGDSSKKFKIAEG-QWYRYAPSYVSPAY-----HLLEG 283
                 **********************************************************..**************.**************.....***** PP

     Phage_F 452 whlaqefaelP..kLseefleenkpidrvlavsdqlpdlivdfkfnvrvvrpmpvysvpgl 510
                 +++   ++e P  +L+e++l++++++d++++ s ql+++++++kfnv+v+r++p+++++++
  KKY14938.1 284 FPF---IQEPPsgDLQERVLIRHHDYDQCFQ-SVQLLQWNSQVKFNVTVYRNLPTTRDSIM 340
                 ***...9999999******************.***************************98 PP

>> KNOX2  KNOX2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     1e-05     0.092       2      22 ..     118     138 ..     117     140 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1e-05
       KNOX2   2 vgadpELDqFMeaYcdvLvkY 22 
                  ++d+E D FM+ Y+dv  ++
  KKY14938.1 118 LHTDQERDYFMQRYHDVISSF 138
                 589***************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 2230.48
//
Query:       KKY14939.1  [L=328]
Description: hypothetical protein UCRPC4_g06565 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.6e-217  718.8  22.3   7.5e-217  718.7  22.3    1.0  1  Microvir_H  Microvirus H protein (pilot protein)


Domain annotation for each model (and alignments):
>> Microvir_H  Microvirus H protein (pilot protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  718.7  22.3  4.2e-221  7.5e-217       1     310 []      18     327 ..      18     327 .. 1.00

  Alignments for each domain:
  == domain 1  score: 718.7 bits;  conditional E-value: 4.2e-221
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Microvir_H   1 msklfgggqkaasggiqgdvlatdnntvgmgdagiksaiqgsnvpnpdeaapsfvsgamakagkgllegtlqagtsavsdklldlvglggksaadkgkd 99 
                 msklfgggqkaasggiqgdvlatdnntvgmgdagiksaiqgsnvpnpdea psfvsgamakagkgllegtlqagtsavsdklldlvglggksaadkgkd
  KKY14939.1  18 MSKLFGGGQKAASGGIQGDVLATDNNTVGMGDAGIKSAIQGSNVPNPDEAVPSFVSGAMAKAGKGLLEGTLQAGTSAVSDKLLDLVGLGGKSAADKGKD 116
                 9************************************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Microvir_H 100 trdylaaafpelnaweragadassagmvdagfenqkeltkmqldnqkeiaemqnetqkeiagiqsatsrqntkdqvyaqnemlayqqkestarvasime 198
                 trdylaaafpelnaweragadassagmvdagfenqkeltkmqldnqkeiaemqnetqkeiagiqsatsrqntkdqvyaqnemlayqqkestarvasime
  KKY14939.1 117 TRDYLAAAFPELNAWERAGADASSAGMVDAGFENQKELTKMQLDNQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLAYQQKESTARVASIME 215
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Microvir_H 199 ntnlskqqqvseimrqmltqaqtagqyftndqikemtrkvsaevdlvhqqtqnqrygsshigatakdisnvvtdaasgvvdifhgidkavadtwnnfwk 297
                 ntnlskqqqvseimrqmltqaqtagqyftndqikemtrkvsaevdlvhqqtqnqrygsshigatakdisnvvtdaasgvvdifhgidkavadtwnnfwk
  KKY14939.1 216 NTNLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKEMTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNVVTDAASGVVDIFHGIDKAVADTWNNFWK 314
                 *************************************************************************************************** PP

                 XXXXXXXXXXXXX CS
  Microvir_H 298 dgkadgigsnlsr 310
                 dgkadgigsnlsr
  KKY14939.1 315 DGKADGIGSNLSR 327
                 ************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3039  (0.169502); expected 358.6 (0.02)
Passed bias filter:                      693  (0.0386525); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 2136.81
//
Query:       KKY14940.1  [L=565]
Description: putative general amino acid permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.6e-101  338.3  39.3   8.2e-101  338.0  39.3    1.0  1  AA_permease    Amino acid permease
    1.4e-17   63.7  40.6    1.9e-17   63.3  40.6    1.1  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.0  39.3  9.1e-105  8.2e-101       2     473 ..      56     521 ..      55     526 .. 0.98

  Alignments for each domain:
  == domain 1  score: 338.0 bits;  conditional E-value: 9.1e-105
  AA_permease   2 vlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasi 99 
                  v+++a+gg+iGt lfv +g+vl + Gp+g++++++l+ +v+++v  +++e+++++p  + f  +a + ++++l+f++G+n++++ ++ +++e++a +i
   KKY14940.1  56 VQLFAIGGAIGTSLFVQMGSVLPKTGPGGLFVGFALWATVLWAVNECFAEMVCYMPIPSPFVRLAGHWVDDALSFAMGWNFFLNMALLVPFEIVAFNI 153
                  89************************************************************************************************ PP

  AA_permease 100 liqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeeeg 196
                  l++fw  ++++p  ++++++++++++ +nl+ v+++g  ef ++++k+  ii+ + +++ +++g++p ++a gfr+++++g++++++  pg    ++g
   KKY14940.1 154 LLTFW--TDKVP-VEAVIIIIMLAYSCLNLITVRYFGVSEFYFSIFKVFLIIGCFAFTFLTMVGANPLHDAyGFRYWSNPGAFVSHI-EPG----STG 243
                  *****..*****.999999***************************************************************44444.444....699 PP

  AA_permease 197 afknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.........aspfvifikesgv 285
                   f+++is++v+++f++ G e++ ++agE++ P+  +P a++++v+r ++f+v+++l+ig+++p nd++ll+ ++++         asp+vi+ + + +
   KKY14940.1 244 KFLAVISAIVQASFTICGPEYISMVAGETERPRSILPAAFKSFVYRMLVFFVGGALAIGIVIPSNDPTLLA-IIDGttsgsgtgaASPYVIACQRLHI 340
                  9**********************************************************************.88889********************* PP

  AA_permease 286 svlaplinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlli 383
                  s+l+++ina+i t+++ss+n+++++a R l+ +a +g aP++++k++k+g P+ a ++++ + lla+l  s +++  +v ++l+ + ++ +l+++l +
   KKY14940.1 341 SGLPHIINACIMTSVFSSGNGLTFAAIRSLHGMAVEGRAPSFFAKCTKNGIPVYAAVATLSFCLLAFLQVSNSSS--SVLTWLVYLITACQLLNYLGT 436
                  *******************************************************************99999999..********************* PP

  AA_permease 384 ilsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknk 473
                  +++yl fR+a ++qg s e l++k++l+p++++++++ l++++l+l++ ++++     + w++ +f++ y ++  f i ++g+kl++k+k
   KKY14940.1 437 CITYLHFRRACNVQGLSRETLPYKSRLQPYTSYYAIFGLVLFILLLGYDLFFP-----GGWSYLYFFLDYTMLAAFPIAMLGWKLIKKTK 521
                  *****************************************************.....89***************************997 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3  40.6   2.1e-21   1.9e-17       8     406 ..      58     490 ..      54     509 .. 0.76

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 2.1e-21
  AA_permease_2   8 alvigsvigsgifvknlaas....ggpalilwvwiavligslavllvyaEl.ssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsv 98 
                    +++ig +ig+  fv+  ++s    +gp  +++++     +++av  ++aE+ ++ +p     +  + +     + f ++w ++   ++ l+   +v
     KKY14940.1  58 LFAIGGAIGTSLFVQ--MGSvlpkTGPGGLFVGFALWATVLWAVNECFAEMvCY-MPIPSPFVRLAGHWVDDALSFAMGWNFF-LNMALLVPFEIV 149
                    5789999**999999..6665555888766666555555559*********777.6666555555554445555555555555.555556667899 PP

  AA_permease_2  99 aasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.....stetdtffpngwpg 189
                    a++ ll+++  +     +++  ++i+i++    +n++ ++  +   ++  i+k++l++  +  + l +v+++  +++     + + + f++++ pg
     KKY14940.1 150 AFNILLTFWTDK-----VPVEAVIIIIMLAYSCLNLITVRYFGVSEFYFSIFKVFLIIGCFAFTFLTMVGANPLHDAygfryWSNPGAFVSHIEPG 240
                    *******99644.....5778889999999************************977777777777777766666668966644445699997776 PP

  AA_permease_2 190 v.......llgllivlwsfdGfesaanvseevkk.kdvpkai...figllivlvlyllvniaflgvvpddei.........anlsn..lgsvaalf 263
                    +       ++++ ++ ++++G e+++ v+ e ++ + +  a+   f+  ++v++++  ++i +++ ++d ++            s+    s++ + 
     KKY14940.1 241 StgkflavISAIVQASFTICGPEYISMVAGETERpRSILPAAfksFVYRMLVFFVGGALAIGIVIPSNDPTLlaiidgttsG--SGtgAASPYVIA 334
                    43444555999999*****************999888655661444444445555555666666666666669888875331..221244468999 PP

  AA_permease_2 264 feavggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgli 359
                     ++++ + + +i++++i+ s++ ++n++++++ r l+ +a +g  P+ffak  k+g+p++a + t+ ++l+ +l ++ +ss+ +++l+ + + + +
     KKY14940.1 335 CQRLHISGLPHIINACIMTSVFSSGNGLTFAAIRSLHGMAVEGRAPSFFAKCTKNGIPVYAAVATLSFCLLAFLQVSNSSSSVLTWLVYLITACQL 430
                    9999999**************************************************************88888887777**************** PP

  AA_permease_2 360 isyllliigalilrkkrphl..kr..........pgkilvaiig.alfllfllvalffpp 406
                    + yl + i++l  r+  +++   r          p+    ai+g +lf+l+l + lffp+
     KKY14940.1 431 LNYLGTCITYLHFRRACNVQglSRetlpyksrlqPYTSYYAIFGlVLFILLLGYDLFFPG 490
                    ****99999999998888775533678666667766678888886677777778888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.55
# Mc/sec: 3111.48
//
Query:       KKY14941.1  [L=801]
Description: putative glycosyl transferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-19   70.8   0.7    1.4e-19   70.8   0.7    2.3  2  Glyco_trans_2_3  Glycosyl transferase family group 2
      3e-17   63.3   0.0    4.8e-17   62.6   0.0    1.3  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    1.1e-13   51.4   0.0    1.8e-13   50.6   0.0    1.4  1  Glycos_transf_2  Glycosyl transferase family 2
    2.1e-13   49.7   2.7    1.1e-07   30.8   4.1    2.9  3  Cellulose_synt   Cellulose synthase
    3.5e-13   49.4   0.0    6.4e-13   48.5   0.0    1.4  1  Glyco_transf_21  Glycosyl transferase family 21
  ------ inclusion threshold ------
       0.06   12.0   0.3        0.9    8.1   0.1    2.3  2  Chitin_synth_2   Chitin synthase


Domain annotation for each model (and alignments):
>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.3      0.72   2.1e+03     153     186 ..     204     240 ..     167     252 .. 0.47
   2 !   70.8   0.7   4.8e-23   1.4e-19       2     186 ..     377     564 ..     376     629 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.72
  Glyco_trans_2_3 153 vrllgylgsllwsalplhlallllfs...llalalvl 186
                      ++ll+ +++++   l +h+++l       ++++a+++
       KKY14941.1 204 LSLLAIAANIIYLVLRAHFTILAQEAahtIYYMAWTF 240
                      2333444444444444444444222200022233333 PP

  == domain 2  score: 70.8 bits;  conditional E-value: 4.8e-23
  Glyco_trans_2_3   2 illlDaDtvlppdclreiaaela.spevaivqgpvlvm..nvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalqevggwdg 92 
                      ++ lDaD  + +d lr ++ ++  +p++ +++ p l++  ++ + l +  ++f    h  + +  ++l +v+ ++Gsg++lrr+al e+gg++ 
       KKY14941.1 377 VAALDADMIPERDWLRALLPHMLqDPKCSMACPPQLFYnvPKDDPLCQSLDVFV---H-VSEPLKDSL-GVAWCTGSGYILRRKALAEIGGFP- 464
                      6779*****************9966*********99873444566655555555...2.466887666.7899********************. PP

  Glyco_trans_2_3  93 dessvsEDfdmglrlqrkGyrvrfvpeslvkekspltlraalrQrkRwayGc.eleklil......lvrllgylgsllwsalplhlallllfsl 179
                        +s++ED   +  l+  G+++ fv+e+l +  +p++l  +l+Qr+Rw+ G  +  ++++      lv+++ ++ +l+ + + +  ++++   +
       KKY14941.1 465 -IGSLAEDVCCSSLLLGSGWNTAFVHEPLQYGTVPDSLTSHLKQRTRWTIGTiQTAYKLRfslygpLVKHMTFFQRLCGFIYTFGSFFTIFLVM 557
                      .89************************************************6422222325667775666666666665555544443333333 PP

  Glyco_trans_2_3 180 lalalvl 186
                      +++ + +
       KKY14941.1 558 SMFTAPI 564
                      3333322 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   1.6e-20   4.8e-17       1     229 [.     278     513 ..     278     514 .. 0.84

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 1.6e-20
  Glyco_tranf_2_3   1 prdlavlVptfneed.vlgevlesllaqeypr..vevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgs..tgksralnealravk.. 87 
                      p+ + v++++ +eed  ++++ +++ + +ypr  ++v+v++d+++++ +e++ee+a a  d  + +  +++ +g+    k+ +ln al+ ++  
       KKY14941.1 278 PS-VDVIITCCGEEDqLVLDTAMAACNVDYPRsrFRVIVCDDGKSTGLREMVEEAALAQFD-NLYYRSRPKFPGVphHFKAGNLNYALEETEkf 369
                      55.789*********6667788888888886656*******************98855556.36665666655532256999999999986665 PP

  Glyco_tranf_2_3  88 ....sdlvllvDdDtvvePdtlkrllqff.ltpkvgavgtpvflln...rstlvsalgalefaerhlrflaarralgvltlnGsgslirrevlk 173
                            +v+ +D+D + e d l++ll+ + ++pk+ ++  p++++n   ++ l++ l+ +     h     + ++lgv+  +Gsg   rr+ l+
       KKY14941.1 370 eggaAHFVAALDADMIPERDWLRALLPHMlQDPKCSMACPPQLFYNvpkDDPLCQSLDVFV----HV-SEPLKDSLGVAWCTGSGYILRRKALA 458
                      554455************************************9987554556677666633....33.477899****999************* PP

  Glyco_tranf_2_3 174 elegldplflltdDyelglrlrragfrtayvpgaavrevfpsslkayikqrnRwvy 229
                      e++g+   ++l++D+  +  l   g+ ta+v +++ + + p+sl+   kqr+Rw+ 
       KKY14941.1 459 EIGGFPI-GSLAEDVCCSSLLLGSGWNTAFVHEPLQYGTVPDSLTSHLKQRTRWTI 513
                      *******.**********************************************86 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   6.1e-17   1.8e-13       1     169 [.     281     460 ..     281     461 .. 0.89

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 6.1e-17
                      EEEEEESS-.TTTHHHHHHHHHHH.GGCCEEEEEEEEES-SSCHHHHHGGGCH.C-TTEEEEEESS....S-.HHHHHHHHHHHH--SS..... CS
  Glycos_transf_2   1 svviptyNe.ektlletlesllaq.dpypdfeiivvDDgStDetveileelak.edprvrvirree....nv.Gkagalnaglraatgd..... 81 
                      +v+i+++ e  +++l t  ++++  +p+++f++iv DDg + +++e++ee+a  +++++ +  r++     +  kag+ln +l+++        
       KKY14941.1 281 DVIITCCGEeDQLVLDTAMAACNVdYPRSRFRVIVCDDGKSTGLREMVEEAALaQFDNLYYRSRPKfpgvPHhFKAGNLNYALEETEKFeggaa 374
                      699******8777788888888889**************************999888998888887554434479***********999999** PP

                      .EEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHHC CS
  Glycos_transf_2  82 .yilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrrealeel 169
                       +++ lDaD +p++dwl+ l+ ++ + ++++ ++++p  f++  +  +  +      + +  +  ++  +++ ++gs  +lrr+al e+
       KKY14941.1 375 hFVAALDADMIPERDWLRALLPHMLQ-DPKCSMACPPQLFYNVPKDDPLCQ--SLDVFVHVSEPLKDSLGVAWCTGSGYILRRKALAEI 460
                      **************************.777999999999999888888766..7999****************************9887 PP

>> Cellulose_synt  Cellulose synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.027        80      19      55 ..     295     331 ..     280     337 .. 0.75
   2 !   13.1   0.0   8.4e-06     0.025     165     288 ..     336     457 ..     325     464 .. 0.85
   3 !   30.8   4.1   3.6e-11   1.1e-07     416     652 ..     462     703 ..     458     727 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.027
  Cellulose_synt  19 antvlsilavdypvekvscyvsddGaalltfealaet 55 
                      +t ++   vdyp  +  + v ddG +    e + e+
      KKY14941.1 295 LDTAMAACNVDYPRSRFRVIVCDDGKSTGLREMVEEA 331
                     467788899****************997666655554 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 8.4e-06
  Cellulose_synt 165 lprlvyvsrekrpGydhnkkaGamnalvrvsavls..napfilnldcdhyinnskalreamcflldrelGkkvcyvqfpqrfdGidksdryanrn 257
                     +  l y sr k pG  h+ kaG +n  +  +  +    a f+  ld d  i +   lr  +  +l+     k++    pq f  + k+d  ++  
      KKY14941.1 336 FDNLYYRSRPKFPGVPHHFKAGNLNYALEETEKFEggAAHFVAALDADM-IPERDWLRALLPHMLQDP---KCSMACPPQLFYNVPKDDPLCQSL 426
                     66799********************7777766665114569999**995.888899999999998776...7888889***************** PP

  Cellulose_synt 258 vvffdinlraldGiqGpvyvGtGcvfrrqal 288
                      vf  ++    d +      G+G ++rr+al
      KKY14941.1 427 DVFVHVSEPLKDSLGVAWCTGSGYILRRKAL 457
                     *******9999999999999*********99 PP

  == domain 3  score: 30.8 bits;  conditional E-value: 3.6e-11
  Cellulose_synt 416 GwiyGsvtedvltGfkmharGwrsvycvtkrdafkGsapinlsdrlhqvlrwalGsveiffsrnnalfagykkklkllerlaylnviiypftsif 510
                     G+  Gs++edv     +   Gw++ +     +   G+ p  l+  l+q  rw++G+++  +  + +l+    k++ +++rl+ +  +   f +if
      KKY14941.1 462 GFPIGSLAEDVCCSSLLLGSGWNTAFVH--EPLQYGTVPDSLTSHLKQRTRWTIGTIQTAYKLRFSLYGPLVKHMTFFQRLCGFIYTFGSFFTIF 554
                     4667*******************99865..56668**********************************************999889999999** PP

  Cellulose_synt 511 llvycilpalsllsgkfivkelsnlasiyll.llflslivlavlelk.w..sGvsleewwrneqfwvigGvsahlfavlqGll..kvlaGvdisf 599
                     l++  +  ++ l+sg  +v+  ++  + +l+ + fls+++  + e+  +  sG  + +      +w+        +av++ +l  k l G    f
      KKY14941.1 555 LVMSMFTAPIVLISGGTMVPYSTINQLRWLMrSCFLSMALNRLNEFVsYlpSGYHIGQREERAMMWMAP---FNALAVVRTFLlpKWLGGKVAVF 646
                     ********************9999999999845899999888877531333677776655555566543...33455555544457888888888 PP

  Cellulose_synt 600 tvtskasddeddefadlyivkwttllip....pltllivnlvavvvgvsrainsaye 652
                     t t    ++ ++  + l    w  l ++       + +v +  ++++v++  ++++ 
      KKY14941.1 647 TATGSQKAELNERDGRLRAPLWRRLKVTlwdcNCWIHLVYICFIIAAVTTVTYHNIT 703
                     888766665556666666666655544311114455566666666666555444444 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   2.2e-16   6.4e-13      18     172 ..     355     512 ..     343     513 .. 0.80

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 2.2e-16
  Glyco_transf_21  18 Kvnnllqalea......akydllvisDsdvrvkpdyLeellaaled.pkvglVtslpv..gsdakglaaaleaaflntlagvlqaklsglgfav 102
                      K  nl++ale+        + ++  +D+d++ ++d L+ ll ++ + pk+++ + + +  +++++    +   +f+  ++  l+    g+  ++
       KKY14941.1 355 KAGNLNYALEEtekfegGAAHFVAALDADMIPERDWLRALLPHMLQdPKCSMACPPQLfyNVPKDDPLCQSLDVFVH-VSEPLKD-SLGVAWCT 446
                      6666666666643333334678999****************988766*******87662155555555555556555.4555555.5899**** PP

  Glyco_transf_21 103 GksmalrreaLeaiGGfealadeLAeDyalgkllraaGlkvvlspapiaqtsvprrsslrallaRqlrWa 172
                      G+ ++lrr+aL++iGGf      LAeD   + ll   G++++++++p+    vp+  sl + l++ +rW 
       KKY14941.1 447 GSGYILRRKALAEIGGFPI--GSLAEDVCCSSLLLGSGWNTAFVHEPLQYGTVPD--SLTSHLKQRTRWT 512
                      *****************99..9*************************99999996..89999*******5 PP

>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.036   1.1e+02      27      70 ..     280     323 ..     259     335 .. 0.79
   2 ?    8.1   0.1    0.0003       0.9     325     425 ..     468     561 ..     465     581 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.036
  Chitin_synth_2  27 ticlvtaysegeeglrttldslastdyddkrklllvvcdGlikG 70 
                     + +++t+  e+++ +  t  +++++dy+ +r  ++v  dG  +G
      KKY14941.1 280 VDVIITCCGEEDQLVLDTAMAACNVDYPRSRFRVIVCDDGKSTG 323
                     55789999999999999999999******998888887886665 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0003
  Chitin_synth_2 325 lGedrylttlllktfpkrktvfvpqakcktvaPdtfkvllsqrrrwinstvhnllelvlvrdlcGtfcfsmrfvvfieligtvvlPvaiaftlyl 419
                     l ed   ++lll      +t fv +     ++Pd+ +  l qr rw   t+    +l     l G ++  m f   ++ +   +      ft++l
      KKY14941.1 468 LAEDVCCSSLLLGS--GWNTAFVHEPLQYGTVPDSLTSHLKQRTRWTIGTIQTAYKLRF--SLYGPLVKHMTF---FQRLCGFIYTFGSFFTIFL 555
                     56666677777654..567899****************************998877643..566666555544...3333445555566666666 PP

  Chitin_synth_2 420 ivasil 425
                     ++ +++
      KKY14941.1 556 VMSMFT 561
                     655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (801 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 5291.44
//
Query:       KKY14942.1  [L=530]
Description: putative mfs siderophore [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-12   46.4  51.7    3.6e-11   42.6  45.1    3.0  2  MFS_1         Major Facilitator Superfamily
    6.7e-05   21.5   9.9    6.7e-05   21.5   9.9    1.7  1  TRI12         Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
       0.15   12.3   4.7       0.35   11.1   3.2    2.5  2  Pox_A14       Poxvirus virion envelope protein A14


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6  45.1     6e-15   3.6e-11      73     352 ..      84     434 ..      74     435 .. 0.88
   2 ?   -1.3   0.4      0.14   8.1e+02      84     103 ..     493     512 ..     479     516 .. 0.43

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 6e-15
       MFS_1  73 alglllllfa....sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv. 166
                 +l+ +ll f+    ss++  l + v +G+g  +++ ++ +++ad ++ ++rg+a+++ s+ + + a  g  ++  ++  ++Wr++f  +ai++  +++ 
  KKY14942.1  84 ILM-WLLYFVnafqSSITGNLSAYVTSGVGFVGMIFSVDVITADTSTLRDRGLAYAFTSSPYIITAFAGSKASEGFY-DYNWRWAFGCFAIILPAVALp 180
                 333.3333433354777799999******************************************************.789***************999 PP

       MFS_1 167 lfllllpeepperkrkspkeee.....................................................................kgtgpapl 196
                 +f+ll + +++++k+   +++e                                                                       ++p p+
  KKY14942.1 181 MFGLLRFNRNKAKKNGLLQKRErsgrtlvqsvvfyliefdilgvfllaaglvlfllpftlagsaadswrsgyiiamlvlgiaaliafvvteRFVAPVPF 279
                 888888777777777776666679******************************************************999999999999888888888 PP

       MFS_1 197 vpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgr.rrrlllallllllaalglall 294
                 +p w++l+++ vl ++l+ +++   +++  + + ++ylq v+g s   +ag++++++ +v+ +  l +g+l++++gr r+ ll++++l +l++ +++++
  KKY14942.1 280 LP-WEILVSRTVLGACLLDFCYQI-AYYCWSDYYTSYLQVVYGTS-ISTAGYISSIFDVVSGVWLLGVGFLIKKTGRfRWLLLWSVPLYMLGVGLMIYF 375
                 88.********9988888888885.8888****************.8******************************8888999999999999999988 PP

       MFS_1 295 avtssavllllvlvl.iGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                   +  ++ + +++ + i +g+g++ ++ ++++   a  ++ +++++l +++g+ gga+g
  KKY14942.1 376 RKPGWSLGYSIMCQIfIALGGGTMIICQQVAVLAAADHNNVASVLALLGVFGYMGGAVG 434
                 8884444444444444888**************************************98 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.14
       MFS_1  84 slwlllvlrvlqGlgagalf 103
                 ++ +l+++ ++++l  g++f
  KKY14942.1 493 QSRMLIAGTAIMALSLGWMF 512
                 22233333333333333333 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   9.9   1.1e-08   6.7e-05     191     373 ..     159     346 ..     103     374 .. 0.68

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.1e-08
       TRI12 191 iqgswrwifyiy.iitsaiavllivvwyyppsfaqlhg...kkvrkree........lakldwigiilvivgvslfllgvswggkpnspwnsakvigli 277
                  + +wrw f  + ii+ a+a+ +  +  +    a+  g   k+ r            l   d +g++l+++g  lfll  +  g   + w s  +i ++
  KKY14942.1 159 YDYNWRWAFGCFaIILPAVALPMFGLLRFNRNKAKKNGllqKRERSGRTlvqsvvfyLIEFDILGVFLLAAGLVLFLLPFTLAGSAADSWRSGYIIAML 257
                 467999999776477889998887777666665555442113332222212222222567899************************************ PP

       TRI12 278 ssglgslvvfalyevygkpvrpivppalfkdtrgfvcillissimgamnlslviiypqqvvnifgsslknweetawmsatasfgtgagvvvlgslf 373
                   g+ +l+ f + e +  pv p++p  ++  +r ++   l+         +    y   +  ++g+s+     + ++s  + f   +gv +lg  f
  KKY14942.1 258 VLGIAALIAFVVTERFVAPV-PFLPWEILV-SRTVLGACLLDFCYQIAYYCWSDYYTSYLQVVYGTSIST---AGYIS--SIFDVVSGVWLLGVGF 346
                 ******************98.777776554.333333334444445556666666666666667777643...23333..3466666666666544 PP

>> Pox_A14  Poxvirus virion envelope protein A14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.1   6.5e+03      34      58 ..     152     178 ..     144     200 .. 0.56
   2 ?   11.1   3.2   5.8e-05      0.35      16      68 ..     221     273 ..     207     276 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
     Pox_A14  34 skstst.tdkawr.alsivsFilgivi 58 
                 sk+++   d+ wr a    + il +v+
  KKY14942.1 152 SKASEGfYDYNWRwAFGCFAIILPAVA 178
                 444444467777733344455555444 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 5.8e-05
     Pox_A14  16 iaGiiLLilacifafvdfskststtdkawralsivs.Filgivillglllfsmy 68 
                 i G+ LL++ +++  + f  ++s++d  wr+  i++  +lgi++l++ ++ + +
  KKY14942.1 221 ILGVFLLAAGLVLFLLPFTLAGSAAD-SWRSGYIIAmLVLGIAALIAFVVTERF 273
                 78*********************887.9**9998873689********998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       915  (0.0510346); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.35s 00:00:01.08 Elapsed: 00:00:00.52
# Mc/sec: 3077.51
//
Query:       KKY14943.1  [L=1365]
Description: putative abc multidrug transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-85  286.7  40.5    4.4e-47  161.0  10.0    2.6  3  ABC_membrane  ABC transporter transmembrane region
    3.2e-67  225.2   0.0    1.6e-33  116.1   0.0    2.6  2  ABC_tran      ABC transporter
    5.2e-14   52.2   4.7    0.00014   21.4   0.1    4.4  4  SMC_N         RecF/RecN/SMC N terminal domain
    1.7e-07   30.9   0.3      0.015   15.0   0.0    2.7  2  AAA_29        P-loop containing region of AAA domain
    3.5e-06   27.4   1.8      0.094   13.0   0.1    4.5  4  AAA_22        AAA domain
    1.2e-05   25.1   1.4       0.35   10.6   0.0    3.5  3  AAA_30        AAA domain
    1.4e-05   25.6   1.2      0.032   14.6   0.0    3.2  2  AAA_16        AAA ATPase domain
    3.3e-05   23.8   0.0      0.045   13.6   0.0    2.5  2  RsgA_GTPase   RsgA GTPase
    0.00018   21.4   6.5       0.86    9.4   0.1    4.3  4  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    0.00043   20.5   1.1       0.01   16.0   0.1    2.7  2  DUF87         Helicase HerA, central domain
    0.00073   20.0   1.4          7    7.1   0.1    4.3  3  AAA           ATPase family associated with various cellular 
    0.00079   19.6   0.3        1.3    9.4   0.0    3.4  2  SbcCD_C       Putative exonuclease SbcCD, C subunit
     0.0017   18.9   0.3          3    8.3   0.0    2.5  2  AAA_23        AAA domain
     0.0019   18.7   0.7        1.9    9.1   0.0    3.2  3  AAA_18        AAA domain
     0.0021   18.0   0.0       0.84    9.6   0.0    3.2  2  AAA_5         AAA domain (dynein-related subfamily)
     0.0024   17.5   0.1        1.1    8.7   0.0    3.4  3  AAA_25        AAA domain
      0.003   16.8   0.2        1.2    8.4   0.0    2.8  3  Zeta_toxin    Zeta toxin
      0.006   16.7   0.0        3.6    7.7   0.0    2.7  2  AAA_33        AAA domain
     0.0081   16.1   1.7      0.089   12.7   0.3    2.6  2  Cad           Cadmium resistance transporter
     0.0093   15.9   0.1        1.3    8.9   0.0    2.4  2  APS_kinase    Adenylylsulphate kinase
  ------ inclusion threshold ------
      0.028   14.2   0.1      0.066   13.0   0.1    1.5  1  Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain
      0.051   13.3   0.1       0.76    9.5   0.0    2.8  3  DEAD          DEAD/DEAH box helicase
      0.057   12.2   0.0       0.17   10.7   0.0    1.8  2  ABC_ATPase    Predicted ATPase of the ABC class
      0.065   13.7   0.0         18    5.8   0.0    2.9  2  AAA_17        AAA domain
      0.087   11.8   0.0          2    7.4   0.0    2.2  2  DUF3987       Protein of unknown function (DUF3987)
       0.11   12.6   0.3         22    5.2   0.0    2.8  2  MMR_HSR1      50S ribosome-binding GTPase
       0.12   11.9   0.1         21    4.6   0.0    2.4  2  AAA_7         P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.0  10.0   6.6e-50   4.4e-47       2     270 ..      59     337 ..      58     341 .. 0.94
   2 ?   -3.1   0.6       7.2   4.8e+03     132     164 ..     352     384 ..     348     391 .. 0.62
   3 !  137.6  15.5     9e-43     6e-40       2     272 ..     778    1050 ..     777    1052 .. 0.98

  Alignments for each domain:
  == domain 1  score: 161.0 bits;  conditional E-value: 6.6e-50
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS..TCCHH..........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  ABC_membrane   2 iliillailagvlsplfplvlgrildtlldk..gdpet..........ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilr 86 
                   ++++++ i++g+  pl+ +++g+++d+l++   +  ++           ++n  +l++++l++aqfi+++++  ++n++g rls+rlr k+f+++l 
    KKY14943.1  59 VVGVVAGIASGIPFPLTGILFGQMIDDLNSAtcA--DDssgssdqayqNEINSKILVVVYLAIAQFITMYAHLACWNMVGARLSHRLREKYFQSLLT 153
                   5688999999********************9663..33446778899************************************************** PP

                   STHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  87 qpmsffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassva 183
                    +  ffd+ s+Ge++srl++d++++++g++ek+g+ + s + fv++++v+f+    l+ +l++++p ++++s v ++ ++k++ k ++ava a s+a
    KKY14943.1 154 KEATFFDNLSPGEVSSRLNSDIQTIQNGTSEKVGICISSASFFVTAYVVAFIKDSTLAGMLVSLVPAYFIMSLVGSHYIEKYSGKVSDAVAAAASIA 250
                   ************************************************************************************************* PP

                   HHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHH CS
  ABC_membrane 184 eEslsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfail 270
                    E ls++ +V+af++  + +++f   l+ a+++gi ka+a+g+++g +++++++++ la+w G+  + +     g+ + + ++f+++
    KKY14943.1 251 SEGLSNMLVVHAFRANFRLEDQFAADLRIARTQGIFKAVATGIQSGLMYFIAYAANGLAFWQGSKAIAKAVAHNGQGTSVGVIFTVI 337
                   ****************************************************************99998877777766666666654 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 7.2
                   HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 132 glivmfylgwkltlvllailpliilvsaviaki 164
                   +l ++ yl+   tlvl  ++p + ++ a  a+i
    KKY14943.1 352 ILMFLAYLSNTATLVLSQVAPFLQMFGAASASI 384
                   333444566667888887777777777766655 PP

  == domain 3  score: 137.6 bits;  conditional E-value: 9e-43
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHH CS
  ABC_membrane    2 iliillailagvlsplfplvlgrildtlldkgdpet..ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdt 94  
                    +l++l+ai++g++  + ++++g+ +++l++  + ++  ++  ++ l++++l++++f++++++ + + +++e+++ ++r +lf+++l+q+++++++
    KKY14943.1  778 LLALLAAIVVGGAFSAEAVIFGNTVESLSSCRSVSSirSHGEFFGLMFFVLAIIEFFANMISWSGFGWVSENIIYTVRVRLFRSLLQQDLQWHQS 872 
                    57899*************************988888999******************************************************** PP

                    ..SCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane   95 ..nsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEsl 187 
                      +++ +lls +tnd + l  + g+ +g  +  ++++++++i+  ++ wk+++v+lai+pl++ + ++ +++ ++++ ++ +a+a ++ +  E++
    KKY14943.1  873 gdRTPTTLLSYITNDGNLLAGLSGSVIGSTLSIVANLIAAVILTHVVAWKIAIVCLAIVPLLLGIGVMQMRVWERFEARHESAYATSTGLCVEAV 967 
                    *********************************************************************************************** PP

                    HTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHH CS
  ABC_membrane  188 sgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfg 272 
                    + i+tV ++  e+++ + ++  l+ ++k  +++ + ++l  g ++++g+l+yala+w+G+ ++i+g +s  +  ++++ f++l+ 
    KKY14943.1  968 KSIKTVSSLSLEHEVMSVYKRTLQGPRKEIVMMGFHASLWLGLSYFVGSLAYALAYWWGSKQIIAGVYSQAQ--FLIVVFSLLVS 1050
                    ************************************************************************..88888888765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.7   0.0     2e-33   1.3e-30       1     137 []     433     625 ..     433     625 .. 0.91
   2 !  116.1   0.0   2.4e-36   1.6e-33       2     137 .]    1139    1290 ..    1138    1290 .. 0.91

  Alignments for each domain:
  == domain 1  score: 106.7 bits;  conditional E-value: 2e-33
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................... 79 
                 l++vsl++ +g+ +aivG +G+GKSt++ l+++l++p  G++lldg ++ke + +++r++i+ ++qe+ l +++ + en                    
  KKY14943.1 433 LQDVSLHCAPGKHTAIVGLSGSGKSTIAGLMIRLYDPIGGDVLLDGFNIKELNARQVRSNISLVQQEAMLLDRS-ILENiahglvnssdpshdwfkpal 530
                 789*********************************************************************99.99999******************* PP

                 .......................................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .......................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .......................................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                                                        +  +++++++++l+ k    tvv+ +++ LSgGq+qr+alaral+k+pk+l+lDE+ta
  KKY14943.1 531 lgpelskvaaavrngdslveaaeahgpvimelvkliqhaTVLADAATFIDTLQHKF--GTVVGMNGRLLSGGQRQRIALARALIKNPKILILDEATA 625
                 ***99999999999999998888888877777776654444444777777777777..99***********************************96 PP

  == domain 2  score: 116.1 bits;  conditional E-value: 2.4e-36
                  EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..........HHHTCHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxx RF
    ABC_tran    2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..........esdeeieka 88  
                  +n++l ++ g+  a+vG++GaGKSt+++l+ +++ pt G+il++g d+++++  s+r  i+ +pq+++lf+++ vr n          + d eie+a
  KKY14943.1 1139 DNLNLRIRSGQFGALVGPSGAGKSTIISLVERMYIPTRGSILINGVDITKRDDLSFRDDIALVPQDSSLFEGT-VRFNialgsragceATDMEIEEA 1234
                  89***********************************************************************.99999********9555555555 PP

                  HHHSTTGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  xxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   89 lsklglke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                   +  +++e         dt++++++s+LSgGq+qr+a+aral++kp+ll+lDEpt+
  KKY14943.1 1235 CKLANIHEtiiglpqGYDTPCGTNGSQLSGGQRQRLAIARALIRKPRLLILDEPTS 1290
                  55555555555555588*************************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0092       6.1      25      40 ..     444     459 ..     434     464 .. 0.86
   2 !   21.4   0.1   2.1e-07   0.00014     130     211 ..     590     667 ..     484     672 .. 0.82
   3 ?    4.5   0.2     0.031        21      24      41 ..    1148    1165 ..    1140    1171 .. 0.87
   4 !   18.5   0.0   1.6e-06     0.001     135     209 ..    1243    1330 ..    1170    1336 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0092
                 SEEEEEESTTSSHHHH CS
                 xxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnl 40 
                 ++taivG  GSGKs +
  KKY14943.1 444 KHTAIVGLSGSGKSTI 459
                 689***********98 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 2.1e-07
                 TT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 130 agiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgv 211
                 +g++  lLSgG+++ +ala       +k   + +lDe  a LD k  +++ + +++  +   +i i++r  +++kadk++ +
  KKY14943.1 590 VGMNGRLLSGGQRQRIALARA----LIKNPKILILDEATASLDSKSEQAILTAVEKVAQGRTLISIAHRLSTIKKADKIIVL 667
                 4555569******98887644....45666799*********************************************9865 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.031
                  SSEEEEEESTTSSHHHHH CS
                  xxxxxxxxxxxxxxxxxx RF
       SMC_N   24 ksftaivGpNGSGKsnll 41  
                   +f a+vGp G+GKs ++
  KKY14943.1 1148 GQFGALVGPSGAGKSTII 1165
                  5799***********998 PP

  == domain 4  score: 18.5 bits;  conditional E-value: 1.6e-06
                  T.................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEE CS
                  x.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  135 e.................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklv 209 
                  +                 +LSgG+++ +a+a       +++  l +lDe  +aLD++  k + + l++ +k+  ++ i++r ++++ ad ++
  KKY14943.1 1243 TiiglpqgydtpcgtngsQLSGGQRQRLAIAR----ALIRKPRLLILDEPTSALDAESEKLLQDGLDKVTKDITVLAIAHRLHTIKAADVIF 1330
                  3666666666666666669******9776654....345666799*******************************************9876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   9.7e-05     0.065      17      38 ..     438     459 ..     432     467 .. 0.81
   2 !   15.0   0.0   2.3e-05     0.015      16      39 ..    1142    1165 ..    1137    1180 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.7e-05
      AAA_29  17 ieidlkgatlltGpsGsGKSTl 38 
                 ++  +   t ++G sGsGKST+
  KKY14943.1 438 LHCAPGKHTAIVGLSGSGKSTI 459
                 55565668*************8 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2.3e-05
      AAA_29   16 tieidlkg.atlltGpsGsGKSTll 39  
                   ++i+  g +  l+GpsG+GKST++
  KKY14943.1 1142 NLRIRS-GqFGALVGPSGAGKSTII 1165
                  566764.44999************9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       4.5     3e+03     108     130 ..      41      62 ..      26      67 .. 0.67
   2 !    8.0   0.0    0.0048       3.2       6      28 ..     444     466 ..     441     518 .. 0.88
   3 ?    1.0   0.0       0.7   4.7e+02      84     106 ..     604     633 ..     537     652 .. 0.68
   4 !   13.0   0.1   0.00014     0.094       4      29 ..    1147    1172 ..    1144    1319 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 4.5
      AAA_22 108 aleeLrsllnlsrkgvqliLvGt 130
                  l  L  ++n+s+++v+li+vG 
  KKY14943.1  41 YL-RLLFFANPSTTDVSLIVVGV 62 
                 33.33356777**********96 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0048
      AAA_22   6 gilvvtGesGtGKTtllrrlleq 28 
                 ++++++G sG+GK+t +  + + 
  KKY14943.1 444 KHTAIVGLSGSGKSTIAGLMIRL 466
                 789************98776665 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.7
      AAA_22  84 qalrarav...ielliiDEaqh.lr..s.e 106
                 + + ara    +++li+DEa   l+  s +
  KKY14943.1 604 RIALARALiknPKILILDEATAsLDskSeQ 633
                 3333333366788*******9888754333 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 0.00014
      AAA_22    4 tagilvvtGesGtGKTtllrrlleql 29  
                  + ++++++G+sG+GK+t +  + + +
  KKY14943.1 1147 SGQFGALVGPSGAGKSTIISLVERMY 1172
                  789***************99988876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0075         5      18      50 ..     443     475 ..     432     507 .. 0.83
   2 ?    4.2   0.4     0.046        31      39     114 ..     549     641 ..     544     652 .. 0.69
   3 !   10.6   0.0   0.00053      0.35      17      45 ..    1148    1175 ..    1141    1302 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0075
      AAA_30  18 drvavltGpAGtGKttalkalreaweaaggrvi 50 
                  + ++++G  G+GK+t+ + + ++++  gg+v+
  KKY14943.1 443 GKHTAIVGLSGSGKSTIAGLMIRLYDPIGGDVL 475
                 45789*************999999998888876 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.046
      AAA_30  39 reaweaag..........grviglAptgkaAkvLaeelgieastiakllkrlk......grarlepgtllivDEagmv.dtkqlaallkaaek 114
                 +ea+ea+g          ++  +lA  ++  ++L++++g+      +ll+  +      +ra +++ ++li DEa    d+k+ +a+l+a+ek
  KKY14943.1 549 VEAAEAHGpvimelvkliQHATVLADAATFIDTLQHKFGTVVGMNGRLLSGGQrqrialARALIKNPKILILDEATASlDSKSEQAILTAVEK 641
                 5666666655555544444555677777777777777776655556666444478999977788888*******9764499999999999998 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00053
      AAA_30   17 gdrvavltGpAGtGKttalkalreaweaa 45  
                  g ++ +l+Gp G+GK+t+++ +++++   
  KKY14943.1 1148 G-QFGALVGPSGAGKSTIISLVERMYIPT 1175
                  4.4889****************9887655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.3    0.0054       3.6      25      48 ..     444     467 ..     427     651 .. 0.54
   2 !   14.6   0.0   4.8e-05     0.032      18     157 ..    1144    1302 ..    1136    1316 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0054
      AAA_16  25 elvllsGesGvGKsslvrellral 48 
                   + ++G sG+GKs+++    r +
  KKY14943.1 444 KHTAIVGLSGSGKSTIAGLMIRLY 467
                 7889************97776522 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 4.8e-05
      AAA_16   18 rvrsgrpelvllsGesGvGKsslvrellr.alekdggiflrgkcdql......esaipysa.laqalareellrqlldeaesaeleawrekleeala 106 
                  r+rsg  +   l+G+sG GKs+++  + r ++ ++g i+++g           + +i++++   ++++    ++  l     a  ea + ++eea +
  KKY14943.1 1144 RIRSG--QFGALVGPSGAGKSTIISLVERmYIPTRGSILINGVDITKrddlsfRDDIALVPqDSSLFEGTVRFNIALGS--RAGCEATDMEIEEACK 1236
                  45555..45678****************966666666665444444411112444455555455555444444444433..3344444444555555 PP

      AAA_16  107 .....................avpelagaeasrllellkrllallsrderplvlvlDdlq.wadeaslqllaa 157 
                                        +++l+g +++rl+ + ++l+      ++p +l+lD+    +d++s +ll+ 
  KKY14943.1 1237 lanihetiiglpqgydtpcgtNGSQLSGGQRQRLAIA-RALI------RKPRLLILDEPTsALDAESEKLLQD 1302
                  6666667667777888877777777777766666655.4444......5688999997665677778887765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0055       3.7      86     116 ..     429     460 ..     410     469 .. 0.77
   2 !   13.6   0.0   6.8e-05     0.045      87     119 ..    1135    1168 ..    1091    1177 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0055
                  THTTHHHHHHHCTT.SEEEEECSTTSSHHHHH CS
  RsgA_GTPase  86 tkegleelkellkd.ktsvlvGqSGvGKStLi 116
                  ++  l++++ +++  k +++vG SG GKSt+ 
   KKY14943.1 429 EQLVLQDVSLHCAPgKHTAIVGLSGSGKSTIA 460
                  55566777777776699*************86 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 6.8e-05
                   HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHH CS
  RsgA_GTPase   87 kegleelkellkd.ktsvlvGqSGvGKStLinal 119 
                   +  +++l+ ++++ ++ +lvG+SG+GKSt+i  +
   KKY14943.1 1135 TPVIDNLNLRIRSgQFGALVGPSGAGKSTIISLV 1168
                   5567788888887799**************9765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.8      0.29   1.9e+02       2      16 ..     446     460 ..     446     485 .. 0.85
   2 ?    2.5   0.0      0.15     1e+02     219     287 ..     573     644 ..     472     658 .. 0.73
   3 !    9.4   0.1    0.0013      0.86       3      36 ..    1152    1180 ..    1150    1216 .. 0.67
   4 !    7.7   0.0    0.0041       2.7     236     272 ..    1261    1294 ..    1257    1318 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.29
      AAA_21   2 nvliGpNgsGKSnLL 16 
                 ++++G  gsGKS++ 
  KKY14943.1 446 TAIVGLSGSGKSTIA 460
                 79***********85 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.15
      AAA_21 219 r......gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr 287
                 +      ++ +++ g     + r lS G+++ +al+ al+  +   ++l++DE  ++L+ k    +l+ +++ ++
  KKY14943.1 573 AdaatfiDTLQHKFGTVVGMNGRLLSGGQRQRIALARALIKNP---KILILDEATASLDSKSEQAILTAVEKVAQ 644
                 1555545555666666666777889*******99999999988...9*******999999999999998877766 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0013
      AAA_21    3 vliGpNgsGKSnLLdaldllarldrdvegltdel 36  
                  +l+Gp g+GKS+++ + + +      +  ++++l
  KKY14943.1 1152 ALVGPSGAGKSTIISLVERMY-----IPTRGSIL 1180
                  8**************999884.....33333333 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0041
      AAA_21  236 elSdGtkrllalltallralkkgsllliDEpEngLHP 272 
                  +lS G+++ la++ al+r +   +ll++DEp + L+ 
  KKY14943.1 1261 QLSGGQRQRLAIARALIRKP---RLLILDEPTSALDA 1294
                  799******99999999988...***********986 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.5e-05      0.01      24      45 ..     444     465 ..     434     477 .. 0.83
   2 ?    2.0   0.1      0.28   1.9e+02      27      57 ..    1152    1181 ..    1151    1182 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.5e-05
       DUF87  24 rHlAilgsTGsGKSntvavLle 45 
                 +H+Ai+g +GsGKS+ ++++++
  KKY14943.1 444 KHTAIVGLSGSGKSTIAGLMIR 465
                 8******************996 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.28
       DUF87   27 AilgsTGsGKSntvavLleellekkgatili 57  
                  A +g +G+GKS+ + +L+e+++   +++ili
  KKY14943.1 1152 ALVGPSGAGKSTII-SLVERMYIPTRGSILI 1181
                  77899******877.5788888777777776 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0       0.5   3.3e+02       3      37 ..     448     492 ..     446     516 .. 0.74
   2 ?    5.9   0.1     0.025        17      43     118 ..     600     661 ..     568     681 .. 0.71
   3 ?    7.1   0.1     0.011         7       3     118 ..    1153    1326 ..    1152    1332 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.5
                 EESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCSSS CS
         AAA   3 lyGppGtGKTllakavakel..........gvefleisgsellsk 37 
                 ++G  G GK+++a  +++            g+++ e+++ +++s+
  KKY14943.1 448 IVGLSGSGKSTIAGLMIRLYdpiggdvlldGFNIKELNARQVRSN 492
                 68999********99999865555544555688888888888865 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHH CS
         AAA  43 ekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpa 118
                  ++ r  +++a  k+ p+il++DE+ a   s+            +++lt++++v +     ++i +++r +++++a
  KKY14943.1 600 GQRQRIALARALIKN-PKILILDEATASLDSK----------SEQAILTAVEKVAQ---GRTLISIAHRLSTIKKA 661
                 455566666666666.9*********999999..........45555555555555...23555555555555444 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.011
                  EESSTTSSHHHHHHHHHHHH..THEEEEEETTTCSSS............................................................ CS
         AAA    3 lyGppGtGKTllakavakel..gvefleisgsellsk............................................................ 37  
                  l+Gp G GK+++++ v +     +  + i+g ++++                                                             
  KKY14943.1 1153 LVGPSGAGKSTIISLVERMYipTRGSILINGVDITKRddlsfrddialvpqdsslfegtvrfnialgsragceatdmeieeacklanihetiiglpq 1249
                  89**********9999888544355677777777733677777778888888888888888888888888777777888888888888888888888 PP

                  ..........STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHH CS
         AAA   38 ..........yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpa 118 
                             +  + ++ r  +++a    kp  l++DE  +   ++            + L   ld+v+k   +++v+++++r ++++ a
  KKY14943.1 1250 gydtpcgtngSQLSGGQRQRLAIARALIR-KPRLLILDEPTSALDAE----------SEKLLQDGLDKVTK---DITVLAIAHRLHTIKAA 1326
                  88887777554444444444444444333.47888888888887777..........34455556777777...58888888888877766 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0019       1.3      62      89 ..     613     640 ..     595     641 .. 0.83
   2 ?    6.1   0.1     0.019        13      62      81 ..    1278    1297 ..    1247    1305 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0019
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllelle 89 
                 +++++++LDEA ++lD++s +++l ++e
  KKY14943.1 613 KNPKILILDEATASLDSKSEQAILTAVE 640
                 5689***************999988765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.019
     SbcCD_C   62 palrlvfLDEAFsklDeesi 81  
                  +++rl++LDE  s lD+es 
  KKY14943.1 1278 RKPRLLILDEPTSALDAESE 1297
                  359*************9975 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0061         4      21      35 ..     445     459 ..     433     463 .. 0.88
   2 !    8.3   0.0    0.0044         3      23      36 ..    1152    1165 ..    1138    1169 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0061
      AAA_23  21 ltlItGpNGaGKTTi 35 
                  t+I+G  G+GK+Ti
  KKY14943.1 445 HTAIVGLSGSGKSTI 459
                 699***********9 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0044
      AAA_23   23 lItGpNGaGKTTil 36  
                  +++Gp GaGK+Ti+
  KKY14943.1 1152 ALVGPSGAGKSTII 1165
                  689**********8 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.5     0.037        24       3      17 ..     448     462 ..     447     484 .. 0.82
   2 ?   -0.7   0.0       2.9   1.9e+03      74     109 ..     471     505 ..     463     510 .. 0.90
   3 !    9.1   0.0    0.0028       1.9       3      42 ..    1153    1197 ..    1152    1215 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.037
      AAA_18   3 ltGtpGvGKttlake 17 
                 + G +G+GK+t+a  
  KKY14943.1 448 IVGLSGSGKSTIAGL 462
                 89**********975 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2.9
      AAA_18  74 gknlvidghlaeleseaakdikkvvLtaspeelleR 109
                 g+++++dg+  + + +++++ + + L   + +ll+R
  KKY14943.1 471 GGDVLLDGFNIKELNARQVRSN-ISLVQQEAMLLDR 505
                 7889****************99.***9999999999 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0028
      AAA_18    3 ltGtpGvGKttlakeLskrlgf.......gvnlrdvakenglllevd 42  
                  l G++G+GK+t+   ++++  +        +n  d+ k ++l++ +d
  KKY14943.1 1153 LVGPSGAGKSTIISLVERM--YiptrgsiLINGVDITKRDDLSFRDD 1197
                  89*************9887..33667666667777777777776666 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.049        33       4      47 ..     448     495 ..     445     611 .. 0.73
   2 !    9.6   0.0    0.0013      0.84       4      48 ..    1153    1199 ..    1152    1217 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.049
                 EE--SSSSHHHHHHHGGGGB....S--EEEEE--TT--HHHHH--B-- CS
       AAA_5   4 LvGppGtgKselaerlaaal....nreveyvqltrdtteedlkgrrei 47 
                 +vG +G+gKs++a  + +++    ++ ++   + + +++++++  +++
  KKY14943.1 448 IVGLSGSGKSTIAGLMIRLYdpigGDVLLDGFNIKELNARQVRSNISL 495
                 79***********99999986665444444444455555555555555 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0013
                  EE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--HHHHH--B--. CS
       AAA_5    4 LvGppGtgKselaerlaaal..nreveyvqltrdtteedlkgrreik 48  
                  LvGp+G gKs+++  + +++  +r    +++ + t+++dl  r +i+
  KKY14943.1 1153 LVGPSGAGKSTIISLVERMYipTRGSILINGVDITKRDDLSFRDDIA 1199
                  9********************99999999999999999998887775 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.076        51      30      50 ..     440     460 ..     414     464 .. 0.79
   2 !    8.7   0.0    0.0017       1.1      26      50 ..    1141    1165 ..    1120    1169 .. 0.82
   3 ?   -0.0   0.0      0.84   5.6e+02     133     180 ..    1272    1319 ..    1255    1324 .. 0.64

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.076
      AAA_25  30 lpagelallaGapgtGKttla 50 
                  + g+ ++++G +g+GK+t+a
  KKY14943.1 440 CAPGKHTAIVGLSGSGKSTIA 460
                 4568999************97 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0017
      AAA_25   26 vkgllpagelallaGapgtGKttla 50  
                  +   ++ g +++l+G++g+GK+t+ 
  KKY14943.1 1141 LNLRIRSGQFGALVGPSGAGKSTII 1165
                  55568899***************86 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.84
      AAA_25  133 leaaieevegvrlvviDplsralgg.densnsdv.galvealeriarrtg 180 
                  +++a+ +  ++rl+++D  ++al++ +e+   d  +++ +++  +a +++
  KKY14943.1 1272 IARALIR--KPRLLILDEPTSALDAeSEKLLQDGlDKVTKDITVLAIAHR 1319
                  4444444..59*******99999994444334444666666666655555 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.019        13      21      90 ..     448     510 ..     443     517 .. 0.82
   2 !    8.4   0.0    0.0018       1.2      21      51 ..    1153    1183 ..    1145    1189 .. 0.87
   3 ?   -1.7   0.0       2.2   1.5e+03     136     174 ..    1312    1358 ..    1307    1364 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.019
  Zeta_toxin  21 lgGqpGAGKselaellkdelerqgnvvrldpDdlRelhPeyeeilkadpkkaseltqkdaselvekllqe 90 
                 ++G +G+GKs++a l+ +  ++ g+ v ld+ +++el          +++++ +l+q++a  l +++l+ 
  KKY14943.1 448 IVGLSGSGKSTIAGLMIRLYDPIGGDVLLDGFNIKELNA-------RQVRSNISLVQQEAMLLDRSILEN 510
                 78999**************99999999999999999882.......246678888888888887777765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0018
  Zeta_toxin   21 lgGqpGAGKselaellkdelerqgnvvrldp 51  
                  l+G +GAGKs++++l+++   ++++ + +++
  KKY14943.1 1153 LVGPSGAGKSTIISLVERMYIPTRGSILING 1183
                  8899**************9999999888886 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.2
  Zeta_toxin  136 SrlgvldRyeeevae........gRlvpkeehdeafeglresveale 174 
                  ++l ++ R  +  a+        gR ++  +h+e fe+ ++  + ++
  KKY14943.1 1312 TVLAIAHRLHTIKAAdviflidgGRCIDRGTHEELFERSQSYRANVQ 1358
                  556666666666333466667757************99887666655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0054       3.6       4      17 ..     448     461 ..     446     492 .. 0.87
   2 ?    6.0   0.0     0.018        12       4      17 ..    1153    1166 ..    1152    1182 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0054
      AAA_33   4 lvGlpGsGKstlae 17 
                 +vGl+GsGKst a 
  KKY14943.1 448 IVGLSGSGKSTIAG 461
                 79*********985 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.018
      AAA_33    4 lvGlpGsGKstlae 17  
                  lvG++G+GKst + 
  KKY14943.1 1153 LVGPSGAGKSTIIS 1166
                  79*********875 PP

>> Cad  Cadmium resistance transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.42   2.8e+02      44      69 ..     196     222 ..     171     235 .. 0.71
   2 !   12.7   0.3   0.00013     0.089      30      74 ..     895     940 ..     883     959 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.42
         Cad  44 llfafvlnyvpeewilGll.Glipiyl 69 
                 ++ a+v+ ++ +  + G+l  l+p y+
  KKY14943.1 196 FVTAYVVAFIKDSTLAGMLvSLVPAYF 222
                 456888888888888886536777765 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00013
         Cad  30 lGqylGsvalvlvsllfafvlnyvpe.ewilGllGlipiylGikvl 74 
                  G ++Gs++ +++ l++a++l +v   +  +  l ++p++lGi v+
  KKY14943.1 895 SGSVIGSTLSIVANLIAAVILTHVVAwKIAIVCLAIVPLLLGIGVM 940
                 5899*****************98765155578899********876 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0     0.002       1.3       7      42 ..     448     482 ..     443     494 .. 0.77
   2 ?    4.3   0.0     0.051        34       7      27 ..    1153    1173 ..    1149    1196 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.002
                 EESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHT CS
  APS_kinase   7 ltGlsgsGKstianalekkLvekgisvylLdGdnvR 42 
                 + GlsgsGKstia  + + L +     +lLdG n++
  KKY14943.1 448 IVGLSGSGKSTIAGLMIR-LYDPIGGDVLLDGFNIK 482
                 68***********98875.55544455689999886 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.051
                  EESSTTSSHHHHHHHHHHHHH CS
  APS_kinase    7 ltGlsgsGKstianalekkLv 27  
                  l G sg+GKsti   +e++  
  KKY14943.1 1153 LVGPSGAGKSTIISLVERMYI 1173
                  679**********99998765 PP

>> Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   9.9e-05     0.066      53      95 ..     630     676 ..     620     691 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.9e-05
  Succ_CoA_lig  53 petkvillylEsirdgrkflsaarraa..rk.kpvvvlksGr.seag 95 
                   ++ ++il  +E++ +gr ++s+a+r++  +k  +++vlk+G+  e+g
    KKY14943.1 630 KSEQAILTAVEKVAQGRTLISIAHRLStiKKaDKIIVLKAGKlLEQG 676
                   56689********************994433478*******953444 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.2   1.5e+03      13      35 ..     442     464 ..     433     469 .. 0.77
   2 ?    9.5   0.0    0.0011      0.76      92     151 ..     580     644 ..     550     658 .. 0.82
   3 ?   -1.6   0.0         3     2e+03     119     147 ..    1277    1305 ..    1226    1315 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.2
                 TTCEEEEEESTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  13 gggdvlvaaeTGsGKTlaflipv 35 
                  g++  + +  GsGK++++ + +
  KKY14943.1 442 PGKHTAIVGLSGSGKSTIAGLMI 464
                 47888899999*****9987765 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0011
                 HHHHTTCSEEEEEHHHHHHHHHCTSSH.....CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  92 skldngvdivvgtpgrlddllstgkln.....lsqvrflVlDEadrlldqgfsdfinrilnqlpq 151
                 ++l+++   vvg  grl++  +++++      +++ ++l+lDEa   ld++ ++ i + +++++q
  KKY14943.1 580 DTLQHKFGTVVGMNGRLLSGGQRQRIAlaralIKNPKILILDEATASLDSKSEQAILTAVEKVAQ 644
                 4556678899*********88888876667779999**************999999888888755 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 3
                  CTTEEEEEEETHHHHHHTTTHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  119 lsqvrflVlDEadrlldqgfsdfinriln 147 
                  +++ r+l+lDE    ld + ++ ++  l 
  KKY14943.1 1277 IRKPRLLILDEPTSALDAESEKLLQDGLD 1305
                  678899*****988888877776666555 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0       8.3   5.5e+03     342     380 ..     616     642 ..     578     666 .. 0.69
   2 ?   10.7   0.0   0.00025      0.17     298     354 ..    1236    1293 ..    1224    1336 .. 0.80

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 8.3
                 SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCH CS
  ABC_ATPase 342 kllLiDEDtsAtNlmirDermqelvskekepitplvdrv 380
                 k+l+             De  ++l sk++++i + v++v
  KKY14943.1 616 KILI------------LDEATASLDSKSEQAILTAVEKV 642
                 4444............45555555555555555555555 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00025
                  EEE--TTTB---CCC--STTEEE.SS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HH CS
  ABC_ATPase  298 kgvDispFinnLPegkdttkfst.edASGStsqAanimealeagakllLiDEDtsAtN 354 
                  k ++i   i  LP+g dt + +  ++ SG   q  +i++al ++ +ll++DE tsA  
  KKY14943.1 1236 KLANIHETIIGLPQGYDTPCGTNgSQLSGGQRQRLAIARALIRKPRLLILDEPTSALD 1293
                  5578999999*********87762688****************************964 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.063        42       1      19 [.     449     467 ..     449     515 .. 0.74
   2 ?    5.8   0.0     0.026        18       1      22 [.    1154    1174 ..    1154    1198 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.063
                 EE-TTSSHHHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklveky 19 
                 +G+ GsGK+t++  + + y
  KKY14943.1 449 VGLSGSGKSTIAGLMIRLY 467
                 79*********97776655 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.026
                  EE-TTSSHHHHHHHHHHHHTEE CS
      AAA_17    1 lGgPGsGKgtqceklvekygft 22  
                  +G+ G+GK+t++  lve++ ++
  KKY14943.1 1154 VGPSGAGKSTII-SLVERMYIP 1174
                  79**********.888877665 PP

>> DUF3987  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.003         2      36      63 ..     443     470 ..     420     475 .. 0.85
   2 ?    1.9   0.0      0.14        93      38      58 ..    1150    1170 ..    1142    1175 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.003
     DUF3987  36 nLytlvvapsGerKSpvdklvlrpleei 63 
                   +t++v+ sG++KS+++ l++r+  +i
  KKY14943.1 443 GKHTAIVGLSGSGKSTIAGLMIRLYDPI 470
                 5579*******************98876 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.14
     DUF3987   38 ytlvvapsGerKSpvdklvlr 58  
                  +++ v+psG +KS++ +lv r
  KKY14943.1 1150 FGALVGPSGAGKSTIISLVER 1170
                  7899***********998866 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0      0.06        40       2      16 ..     446     460 ..     445     473 .. 0.86
   2 ?    5.2   0.0     0.033        22       3      17 ..    1152    1166 ..    1151    1174 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.06
                 EEEEESTTSSHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLi 16 
                  aivG + +GKSt+ 
  KKY14943.1 446 TAIVGLSGSGKSTIA 460
                 59***********86 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.033
                  EEEESTTSSHHHHHH CS
    MMR_HSR1    3 aivGrpNvGKStLin 17  
                  a+vG + +GKSt+i+
  KKY14943.1 1152 ALVGPSGAGKSTIIS 1166
                  79***********96 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.031        21      27      52 ..     437     462 ..     432     471 .. 0.84
   2 ?    4.6   0.0     0.032        21      32      52 ..    1147    1167 ..    1139    1181 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.031
       AAA_7  27 elllknkkpvllvGptGtGKtviikd 52 
                 +l+++ +k++ +vG +G+GK++i+  
  KKY14943.1 437 SLHCAPGKHTAIVGLSGSGKSTIAGL 462
                 5678889**************99765 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.032
       AAA_7   32 nkkpvllvGptGtGKtviikd 52  
                  +++   lvGp+G GK++ii+ 
  KKY14943.1 1147 SGQFGALVGPSGAGKSTIISL 1167
                  5555679***********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1017  (0.0567237); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 1.11u 0.35s 00:00:01.46 Elapsed: 00:00:00.56
# Mc/sec: 7296.19
//
Query:       KKY14944.1  [L=430]
Description: putative aerobactin siderophore biosynthesis protein iucb [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-39  133.2   0.2    1.9e-38  131.4   0.3    1.8  2  Acetyltransf_8  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0     0.095   1.7e+03      76     102 ..      17      43 ..      12      48 .. 0.81
   2 !  131.4   0.3   1.1e-42   1.9e-38       3     136 ..     248     382 ..     246     391 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.095
                     -TT-EEEEEEESSHHHCTTTCHHHHHH CS
  Acetyltransf_8  76 epgdrGiHlligeaeargkglttallr 102
                     +p+ +  H +++e+++ g+ l +  ++
      KKY14944.1  17 HPYLTSYHAALAEEKFEGQDLLQVRIS 43 
                     5777889*********99998876665 PP

  == domain 2  score: 131.4 bits;  conditional E-value: 1.1e-42
                     GGGHHHHHHHCTSCCCHHHH-----HHHHHHHHHHHC.STTEEEEEEEETTEEEEEEEEEEGGGCGGGGCS---TT-EEEEEEESSHHHCTTTCH CS
  Acetyltransf_8   3 eaDlellhrWmnrprvaewweeagtleevrellakldadphsepliglldgepvgyfeiYwakedelaeyydaepgdrGiHlligeaeargkglt 97 
                     +++++l+h+W+n+prva+ w+e+gt ee+re+l+k ++dphs p+ g++d++ ++yfe++waked++++yy   ++d G H l+ge ++rg++++
      KKY14944.1 248 DDHVKLFHKWQNDPRVAKGWNETGTFEEHREYLRKQHEDPHSLPVFGRFDDTCFSYFEVFWAKEDHVGAYYASGDFDKGRHSLVGESAFRGRHRV 342
                     6899******************************************************************************************* PP

                     HHHHHHHHHHHHCCT.T--EEEE--BTT-HHHHHHHHHTT CS
  Acetyltransf_8  98 tallralvhylfadp.rtrrvvvEPdvrNerairllekaG 136
                       ++++++hy f+d+ rt+ v++EP ++N+ +  +    G
      KKY14944.1 343 FGWWPSVIHYSFLDDhRTSTVIGEPIATNTTVQVYDYTFG 382
                     ************7555**************9877666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 2609.48
//
Query:       KKY14945.1  [L=1961]
Description: putative nonribosomal peptide synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-79  265.8   0.0    3.5e-70  236.7   0.0    2.2  2  AMP-binding   AMP-binding enzyme
    5.8e-75  252.7   0.0    4.7e-40  137.6   0.0    2.3  2  Condensation  Condensation domain
      5e-25   87.6   0.4    8.5e-13   48.5   0.1    3.5  3  PP-binding    Phosphopantetheine attachment site


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.7   0.0   5.9e-74   3.5e-70       3     423 .]     100     503 ..      98     503 .. 0.85
   2 !   26.9   0.0   2.9e-10   1.8e-06     354     416 ..    1215    1281 ..    1186    1287 .. 0.80

  Alignments for each domain:
  == domain 1  score: 236.7 bits;  conditional E-value: 5.9e-74
                  HHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEE CS
  AMP-binding   3 eqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvlia 100
                  + a+++p ++a+ +   + +l+Y+e+++ ++ +A+ L   +v  g++V+++ ++s    va+la++kaGa+ + ++p+ +  +l+ i ++++a++++ 
   KKY14945.1 100 HEARRQPTATAIDS--WDGQLSYEEVEKFSTHMAHRLADSNVSVGKKVLLCFEKSRWTAVAVLAVMKAGATFILMDPSQPLGRLRTIAQEVQAETIL- 194
                  6799********55..6789******************77*********************************************************. PP

                  TCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSC CS
  AMP-binding 101 tvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfk 198
                   +++++        ++l  ++ ++++ ++  ++ ++l+++  +e +   p    ++ +d ++yii+TSG+TGkPKGV++sh+ +++++     ++  +
   KKY14945.1 195 -TSKIN-----HGLGALVLPQGKVLSVSA--ETFTPLHTKGLCEGNL--P----AVPSDGILYIIFTSGSTGKPKGVVISHETYTSSAIPR--SDAVG 276
                  .65444.....444555455555444432..3345677888777553..3....4689***********************9999997663..22233 PP

                  CTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EB CS
  AMP-binding 199 lkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggepls 296
                   + +++vl ++++a+++++  ++l++l++G+++++++++++++   l ++i++ +vt+ + +P+v++ l +++           +sl+ + lgge++s
   KKY14945.1 277 YRCESRVLDFASYAFDVSV-DSMLCTLFRGGCLCIPSNEERMN--DLSGAIRRMGVTMANMTPSVARIL-DHD---------IIPSLHSLGLGGESCS 361
                  33489*************8.***************99998843..589*****************9877.553.........4568999889****** PP

                  HHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-......TTEEEEEE-TTTSCBE.ETTSEEEEEEEETTS-SEBTT-HHHHHH CS
  AMP-binding 297 pellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkpl......pgvevkivDeetgepv.pdgeeGellvrgpgvmkgYlkkpeatae 387
                  +  + ++ +++  +++ gYG++E+t+ +t ++ +        +Gkp        g+ + ivD+e+ +++ p g +Gellv gp v +gYl++p ata 
   KKY14945.1 362 AGDVARWGQHT--RIVIGYGPSECTVGCT-INSSA------AIGKPYvnmgtgNGAVIWIVDPEDHNRLmPIGAVGELLVEGPIVGQGYLNNPTATAA 450
                  **********7..49*************9.45222......355554444444799*****9987665549*************************** PP

                  HEEE...............TCCEEEEEEEEEEETTSE..EEEEEECCCEEEET CS
  AMP-binding 388 afds...............egrwlrTGDlgrldedGy..leivgRkkdliklr 423
                  +f++               +gr+++TGDl+r+d++G+  l +vgRk+ ++k+r
   KKY14945.1 451 VFIEnppwllagtenfpgrNGRLYKTGDLARYDPEGNkgLVFVGRKDSQVKIR 503
                  ***8899*********874377**************889************96 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 2.9e-10
                   TTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEE...T.CCEEEEEEEEEEETTSEEEEEEEC CS
  AMP-binding  354 etgepvpdgeeGellvrgpgvmkgYlkkpeataeafds...e.grwlrTGDlgrldedGyleivgRk 416 
                   ++ +++p g +Ge+l+ gp + ++Y k+p+   +  ++     g + rTGDl+++ +dG+l ++g k
   KKY14945.1 1215 NHDQLMPVGAVGEMLIEGPMNSSCYTKDPSWLMRGAKNndgRyGTLHRTGDLVKYGDDGSLIFMGQK 1281
                   3467789**********************8755555534443556**********88*******987 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.8   0.0   2.6e-36   1.6e-32       1     456 [.     752    1171 ..     752    1172 .. 0.81
   2 !  137.6   0.0   7.9e-44   4.7e-40       2     439 ..    1557    1956 ..    1556    1959 .. 0.84

  Alignments for each domain:
  == domain 1  score: 112.8 bits;  conditional E-value: 2.6e-36
                    EEEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSH CS
  Condensation    1 vqdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleesee 95  
                    v+d+yp +p+Q+ ++++++    s+ +++q v +l  +l ++ l+ka++  +   ++LRt++++     +vQv+ +e    l   +++       
    KKY14945.1  752 VEDVYPCTPLQEILLVFSERT--SQRFVTQRVAQLPDNLSIDELKKAWEISVAGSPVLRTRIVQLPSYGFVQVVIKEGIDFLFSANLQ------- 837 
                    589********9999998755..999*************************************988999***9996543334344444....... PP

                    HHHHHHHHHHHHTC--SCCCS-SEEEEEEE.SSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSH CS
  Condensation   96 eeaieefaqkdlqepfdLekgpLfraalfk.iaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqylesk 189 
                          +++ d+++ + L   pL r ++++ +++ + +++++vHH i DG+S++++++   ++     +g e+p p+    k ++     +l   
    KKY14945.1  838 -----DYLKSDKSQVMTLG-TPLSRYCIVTeHTSGKSHFVWTVHHAIYDGWSTPLIIERVNRAL----RGLETPRPSQM--KHFVH----FLLDP 916 
                    .....44555555566664.4888888875389999************************9999....77666665544..44443....58889 PP

                    HHHHHHHHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTC CS
  Condensation  190 dlekeeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgRese 284 
                    +++ ++++W++ql+g        ++++++++rs+    ++i        +l + +++ ++t+ ++   a++l+ s+yt + d+v+g +  gR  +
    KKY14945.1  917 ERKASRDFWRTQLQGATG-----PQYPTLPSRSYLPRPDAIHE---RYIRL-QRQAKPEITIASIIRGAWALVASRYTMSHDVVFGETLVGRSIP 1002
                    999***********9433.....44455566666533333322...22233.4455678************************************ PP

                    STCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HH....CCCEEECCCCS CS
  Condensation  285 ikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgq....eseeeesqlse 375 
                    i + e++ G  + t+P+r+ +++  t  e+++r+++   +  ph+ y+ +++++ ++  +  + +  ++ v++  n   q    +  ++  ++++
    KKY14945.1 1003 IHGAEQIEGPMIATVPVRVIIDHTVTVHEFLQRIQDLSITRIPHEHYGMQNIRQVSQDAQL-ACELKMGIVIQPDN---QistkDYNSDLLSFED 1093
                    ************************************999999**********777775553.44434444454444...2235666677777777 PP

                    EEECEE...E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC-----HHHHHHH CS
  Condensation  376 lklsvssveaeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqviehpeqklselkllsdaekekL 456 
                     +   +   a +  +y l l  + +++++++  ++ +sl +  +++r+l +l+ + +q+ ++ + ++se++ ls+++ +++
    KKY14945.1 1094 ADAARE---ALHFNSYPLLLACTLKKDGFQLLSSFDSSLISVRQMSRLLAQLECAAQQLSSDMDVQVSEVSCLSEEDCQEI 1171
                    777744...66799*************************************************************998876 PP

  == domain 2  score: 137.6 bits;  conditional E-value: 7.9e-44
                    EEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHH CS
  Condensation    2 qdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseee 96  
                    qd++pl++ Q  +  ++   + +++ ++  +++le+++d++rle+  + l+++h +LRtvf+e   g  +Qvile+ +v++  ++      ++ e
    KKY14945.1 1557 QDVLPLTDSQ--IRDVKATVDTPRSSVQYNMFYLEKSIDENRLEQCCKYLVRQHTILRTVFIET-SGSYMQVILENLKVPMVHEDCD----QDLE 1644
                    8999******..999999999****************************************977.****************666665....6678 PP

                    HHHHHHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHH CS
  Condensation   97 eaieefaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdl 191 
                    + + ++  +d++++f L+k p +++  ++ + ++  l++++ H   DG+Sl+ l+r+la +Y    +g+++p+   tp+++y+ +       k++
    KKY14945.1 1645 TFVTRYCAADIERDFPLAK-PFLKFVFVRGQGSHNCLIIRISHAQYDGISLPALIRQLALIY----EGSPIPK--HTPFESYIHH-----IRKHR 1727
                    89***************97.677888888789999999************************....8888766..888*******.....77899 PP

                    HHHHHHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCST CS
  Condensation  192 ekeeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseik 286 
                     ++ +YW+++l+g     +L + +  + +++++        ++ +   +  + +++++t+ + l aa++l+Ls+  + +d+ +g+++sgR+   +
    KKY14945.1 1728 DDSLQYWAKLLKG----SSLSQLSLASSNQQIS-------ESSFFRRSIDMANRQSNITMATMLTAAWTLILSRRLSVRDVTFGVVVSGRNVDFL 1811
                    9***********9....4455553334444444.......23334456777999***************************************** PP

                    CHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEECEE CS
  Condensation  287 diermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselklsvs 381 
                    d  +++G    ++P+ri ++ + t s+l+++v+   l+  +++++++++L++ + ++ +  +   fd+++    +++++  +  +  +  k++  
    KKY14945.1 1812 DATEVMGPCYHIVPVRIILDSKWTVSDLLQSVQSLSLERGRYESVGFGDLKSSCPNWPS--DATFFDSIVHH--MDIDDFNSMPFAGTNCKVE-- 1900
                    *******************************************************9996..77799999887..5666666555555555544.. PP

                    ...E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTT CS
  Condensation  382 sveaeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqviehpe 439 
                    +++ + e +    +  +++ g+l + i  +ts    e+ +r+l+ l  ++++++e p+
    KKY14945.1 1901 IANPHFEPSTPTRVVSFPEAGRLVVGI--ATSKCLTESATRLLDDLCAVMHEFVETPH 1956
                    444344455566666666677777777..56666677777777777777777777666 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   2.4e-12   1.4e-08       3      63 ..     648     707 ..     647     710 .. 0.93
   2 ?   -0.8   0.0      0.33     2e+03      32      51 ..    1371    1390 ..    1370    1393 .. 0.85
   3 !   48.5   0.1   1.4e-16   8.5e-13       2      66 ..    1450    1513 ..    1449    1514 .. 0.95

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 2.4e-12
  PP-binding   3 lrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlael 63 
                 lr+l++++lgv+  +i   +++f+lG+DS+la++l+a  +e+ ++ ++++d+f +p  +e+
  KKY14945.1 648 LRDLWSRLLGVEKGDIRTRHNFFSLGGDSILAMKLVATSREK-DFILTVTDIFSYPIFGEM 707
                 89************************************9999.**********99866665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.33
  PP-binding   32 llavellaaleeefgveipl 51  
                   +++ell ++++++g  +p+
  KKY14945.1 1371 TDLAELLLRMNKTLGEVLPP 1390
                  5799***********99998 PP

  == domain 3  score: 48.5 bits;  conditional E-value: 1.4e-16
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaay 66  
                   l+ l++++lg+p+++i++d+ +f lG+DS++a++l++a +++ g  ++ sd+f+h  l+e+a +
  KKY14945.1 1450 LLQGLWSDILGLPASSIELDDGFFRLGGDSIMAMKLVSAARQA-GYVLTISDIFQHMLLGEMAGA 1513
                  5899***************************************.************999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1961 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.10u 0.33s 00:00:01.43 Elapsed: 00:00:00.50
# Mc/sec: 11794.73
//
Query:       KKY14946.1  [L=207]
Description: putative peroxisomal dehydratase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-23   80.9   0.0    7.5e-23   80.4   0.0    1.2  1  MaoC_dehydratas  MaoC like domain
      0.003   17.9   0.0     0.0069   16.7   0.0    1.7  2  4HBT             Thioesterase superfamily
     0.0039   17.3   0.1       0.23   11.6   0.0    2.9  2  MaoC_dehydrat_N  N-terminal half of MaoC dehydratase


Domain annotation for each model (and alignments):
>> MaoC_dehydratas  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0   1.3e-26   7.5e-23       6     103 ..      67     163 ..      60     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 1.3e-26
                      TTSEEEEEEEEEEEHHHHHHHHHHHT---GGGT-HHHHHHTTTSSSB--HHHHHHHHHHHHHHHHSTTEGGGEEEEEEEE-S--BTTCEEEEEE CS
  MaoC_dehydratas   6 igekvetekeitvteadialyalvsgDlnpiHvdpefAkkagfggpIahGmltlaivaklveeelgdnvvarvgeikvrFtkpVlpgdtlkvel 99 
                      +++k  t  +  v ++   ly+l  gD+np+H d e+A++agf+g+I+hG+++  +  +l+++e++d+ ++ ++e+++rF+kpV pgd+l+ e+
       KKY14946.1  67 PDRKATTMLTHEVPRTAHLLYRL-NGDYNPLHADSEAAAEAGFDGVIMHGLYSWNVTCRLLMAEFTDRSATSLKEFRARFVKPVCPGDKLTIEA 159
                      44455555555555788899***.********************************************************************** PP

                      EEEE CS
  MaoC_dehydratas 100 evvg 103
                      +v +
       KKY14946.1 160 WVLD 163
                      *987 PP

>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.2   1.3e+04      48      62 ..      17      31 ..      15      33 .. 0.61
   2 !   16.7   0.0   1.1e-06    0.0069      31      58 ..     136     163 ..     105     170 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.2
                CEEEEEEEEEEEESS CS
        4HBT 48 deltvearvlrlgrt 62
                 ++t+e ++ ++g++
  KKY14946.1 17 TVVTLEHELYEIGNS 31
                456666666666666 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.1e-06
                 EEEEEEEEEESS-BBTTCEEEEEEEEEE CS
        4HBT  31 vvvvelsidflrpvrlgdeltvearvlr 58 
                     e++++f++pv +gd+lt+ea+vl 
  KKY14946.1 136 TSLKEFRARFVKPVCPGDKLTIEAWVLD 163
                 5566899*******************85 PP

>> MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.12   7.1e+02      96     122 ..       2      26 ..       1      36 [. 0.74
   2 !   11.6   0.0   3.8e-05      0.23      27      99 ..      91     160 ..      84     186 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.12
  MaoC_dehydrat_N  96 tesriadvydkkgvGalefivvettvt 122
                      +++++ dv+dk g  a+ +++ e++++
       KKY14946.1   2 FRTKVLDVSDK-G-NAGTVVTLEHELY 26 
                      6889999***8.5.6777777777654 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 3.8e-05
  MaoC_dehydrat_N  27 getnpayldeeaaraagyrsliaPptflivlatkapellealgidlsrllhgeqefeyhepiraGDelttesr 99 
                      g++np++ d eaa++ag++++i+   +   +  +   l+ ++    +  l  e + ++ +p+++GD+lt+e+ 
       KKY14946.1  91 GDYNPLHADSEAAAEAGFDGVIMHGLYSWNVTCRL--LMAEFTDRSATSL-KEFRARFVKPVCPGDKLTIEAW 160
                      89******************998655544444444..4444433333333.3566677777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1529.32
//
Query:       KKY14947.1  [L=450]
Description: putative l-ornithine 5-monooxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-78  264.3   0.0    1.9e-78  264.0   0.0    1.0  1  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    1.4e-06   28.4   0.1    5.2e-06   26.5   0.1    2.0  2  NAD_binding_9  FAD-NAD(P)-binding
    0.00038   19.8   0.2     0.0067   15.7   0.1    2.8  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    0.00091   18.5   0.0       0.11   11.7   0.0    2.8  3  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
       0.14   11.4   0.0         20    4.3   0.0    2.9  3  Thi4           Thi4 family


Domain annotation for each model (and alignments):
>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.0   0.0   5.2e-82   1.9e-78       3     342 .]      27     381 ..      25     381 .. 0.94

  Alignments for each domain:
  == domain 1  score: 264.0 bits;  conditional E-value: 5.2e-82
  K_oxygenase   3 lDligiGiGpsnLsLailleevkkelkalflerqpefaWhpgmllegaelqisfLkDlvtlrdPtspfsFlnYlkekgrLykFlnletflpsRkefed 100
                  +D  +iG+G+  ++La++ ++++ +lk+ f+e+q++ +W p     g ++ +sfL Dl+t+r+P+s+f+F+nYl++ g+L++F+nl++  psR ++++
   KKY14947.1  27 YDALCIGFGATGVALAVAFNDQNPNLKIQFVEQQSRRSWKPSAQSVGERMRTSFLDDLITARNPRSEFTFVNYLHTVGQLVTFTNLSDIKPSRYQYAQ 124
                  899*********************************************************************************************** PP

  K_oxygenase 101 YlrWvasqleeqvrfgeeveevepdeeeee..elltveskd.aegeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkee....llak 191
                  Yl W+as++++qv +g++v +vep+ +e+   ++++v ++d  +++++ l a++++ +vG++p iP  l +   + +++H+s+ le +e     ++++
   KKY14947.1 125 YLTWCASHFKDQVVYGKKVLRVEPVYHENGlvTHWKVVTRDvVSNKAQVLFAKRVISAVGKQPRIPVSLSSPGLSGQLLHASDCLEATEGllepTQKS 222
                  *************************998888999*******999**************************99999************987999999** PP

  K_oxygenase 192 kriaVvGsGqSaaeifedllrrqkkvelklvtrsealeplddspfv.neifsPeyvdyfyslpeekreallkeqkatny.kgvdaelieelyeelyeq 287
                  ++ia vG Gq aae+f + +++ +  +++++tr++ l+p  d+ f+ n + +P+  +   + p e r++ l +q +  y +g+d +++++ly+  y+ 
   KKY14947.1 223 RHIALVGDGQQAAEVFLKFHTELSPHKITWYTRESVLRPRSDTAFTiNALQQPNVSQPSIDYPPELRRQYLLNQGSPDYaHGIDLDIVDKLYDLQYTL 320
                  **********************999********************8356789*********99998888877776665527***************** PP

  K_oxygenase 288 kvkg....eerlrllpnrevesaeaegkgeveltlrneesgee..etlevdavvlATGYrr 342
                  +vk+    +++++++p++eve+ae++++g+v+l++r+  +g+   +++++d v+ ATGY+r
   KKY14947.1 321 RVKQpdetSWSYQIRPYMEVEGAERTPEGQVKLSFRDLRNGSIstDETRFDLVIAATGYER 381
                  **987766668****************************99762267889*********85 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1   1.4e-09   5.2e-06       3     155 ..      32     185 ..      30     186 .. 0.74
   2 ?   -1.8   0.0      0.77   2.8e+03     142     155 ..     366     379 ..     339     380 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.4e-09
  NAD_binding_9   3 vGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtdqseelllNvpasemslftddp.ptfaeWlrergaleeaeeldpddfvpRalyG 97 
                    +G G++G+a++ ++ ++     +l+i+ +++++  + ++  ++  e++++    + +++   ++  tf+++l++ g+l   ++l +d  ++R  y 
     KKY14947.1  32 IGFGATGVALAVAFNDQ---NPNLKIQFVEQQSRRSWKPSAQSVGERMRTSFLDDLITARNPRSeFTFVNYLHTVGQLVTFTNL-SDIKPSRYQYA 123
                    9************9999...59*********87753444444456777777778888887766689**********73334454.6799******* PP

  NAD_binding_9  98 rYlrdlfeellarl...pegvtvevh...raevvdleeradgqavlladgaslaadaVvLAlGh 155
                    +Yl+++++++ +++   ++ ++ve +   ++ v+  +     + v+ ++ + l a++V+ A+G 
     KKY14947.1 124 QYLTWCASHFKDQVvygKKVLRVEPVyheNGLVTHWKVVT--RDVVSNKAQVLFAKRVISAVGK 185
                    ************9966444445554411133444444443..3578899999999999999997 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.77
  NAD_binding_9 142 aslaadaVvLAlGh 155
                    +++++d V+ A+G 
     KKY14947.1 366 DETRFDLVIAATGY 379
                    56899*******96 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   1.9e-06    0.0067      46     216 ..      85     275 ..      30     283 .. 0.67
   2 ?    0.3   0.0     0.093   3.3e+02     204     270 ..     328     382 ..     312     407 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.9e-06
  Pyr_redox_3  46 ispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksfelpiklfeeVesvkk..ed....egfevet......sketyeAkkviiA 131
                  i+   +  ++++ +  +++ +      l++ k+sr ++++Yl+  a++f+ ++ + ++V +v++  ++    ++ +v t      + +++ Ak+vi A
   KKY14947.1  85 ITARNPRSEFTFVNYLHTVGQLVTFTNLSDIKPSRYQYAQYLTWCASHFKDQVVYGKKVLRVEPvyHEnglvTHWKVVTrdvvsnKAQVLFAKRVISA 182
                  5555555555555544444444444457888*******************************99653312223455555222211446999******* PP

  Pyr_redox_3 132 tGef.dkPnklnipGeeklvkhyskvkefh.....kya.gqkvvViGgknSavDaAlelvrk..gaeVtvvtrgseiekeesdpsyslkpdien 216
                   G+   +P  l+ pG + +  h s   e++     +++  ++++ +G +  a+++ l++  +   +++t++tr+s ++ + sd   ++++  ++
   KKY14947.1 183 VGKQpRIPVSLSSPGLSGQLLHASDCLEATegllePTQkSRHIALVGDGQQAAEVFLKFHTElsPHKITWYTRESVLRPR-SDTAFTINALQQP 275
                  **852578888888887666666665443311111444256678888888888888877766557888888888876665.5777777766665 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.093
  Pyr_redox_3 204 sdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpd 270
                  ++ sy+++p++e + +e   e+++k+ f+    ++++      ++t++    +  d v++atGy+ +
   KKY14947.1 328 TSWSYQIRPYMEVEGAERTPEGQVKLSFR----DLRN--G--SISTDE----TRFDLVIAATGYERS 382
                  55566666666665555555555555554....2222..1..233333....223456777888765 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.054   1.9e+02     142     176 ..      22      62 ..       5      92 .. 0.68
   2 !   11.7   0.0   3.1e-05      0.11      92     157 ..     157     237 ..      27     268 .. 0.66
   3 ?    2.9   0.0     0.015        53     224     267 ..     366     409 ..     334     439 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.054
                  T....SEEEEES-SHHHHHHHHHHHHHT-..EEEEEESSSS CS
                  x....xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx RF
  Pyr_redox_2 142 p....krivvvGgGyiGvElAaalaklgk..evtlveardr 176
                  +     +++ +G G++Gv lA a+++ +   ++  ve+ +r
   KKY14947.1  22 NntpfYDALCIGFGATGVALAVAFNDQNPnlKIQFVEQQSR 62 
                  13345577889999999999999988744224555555555 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.1e-05
                  C...........TCEEEEEESEEEE---EEE-BC...TCTTC.TTBEECCSECHHHHHHCCSS-T.SEEEEES-SHHHHHH CS
                  x...........xxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
  Pyr_redox_2  92 e...........gdeekiaydklvlAtGssprdl...gipGvaenvgklvrtldsaealklkllp.krivvvGgGyiGvEl 157
                  +           ++ + + +++++ A G +pr++     pG+  +  +  + l+ +e+l +  ++ ++i+ vG G  + E+
   KKY14947.1 157 ThwkvvtrdvvsNKAQVLFAKRVISAVGKQPRIPvslSSPGLSGQLLHASDCLEATEGLLEPTQKsRHIALVGDGQQAAEV 237
                  03333335555377777777**************98877899777777767777777765555557*******99888887 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.015
                  CEEEESEEEE-S-EEES-HHCS.HCCT-EEEETTEEE--TTSBES CS
                  xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 224 eeidadlvvvavGvrpstelle.eklglelderggivvdeflrtn 267
                  +e   dlv+ a+G++ s  l+  ++   +l e+g + vd+ ++ n
   KKY14947.1 366 DETRFDLVIAATGYERSEYLRVlKN-LEPLSEQGSLTVDRDYKLN 409
                  33679************99885433.3346899999999988655 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0057        20      18      50 ..      27      60 ..      12      63 .. 0.85
   2 ?   -0.5   0.1      0.16   5.9e+02     133     169 ..     153     186 ..     142     192 .. 0.78
   3 ?    2.9   0.0     0.015        53      39      63 ..     403     427 ..     394     439 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0057
                EEEEEE--SHHHHHHHHHHHHC.TTS-EEEEESS CS
        Thi4 18 sDvvivGaGssGLtaayylakk.pdlkvailers 50
                 D + +G G++G++ a  +  + p+lk+  +e++
  KKY14947.1 27 YDALCIGFGATGVALAVAFNDQnPNLKIQFVEQQ 60
                688999***********999888*******9986 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.16
                 EEEEEEEHHHHTCTTTSS.-B-EEEEEEEEEE--GSS CS
        Thi4 133 aGvvinwtlvelahdtqscvDPlvirakvvvdatGhd 169
                 +G+v+ w++v+++         +v+ ak v++a G +
  KKY14947.1 153 NGLVTHWKVVTRDV---VSNKAQVLFAKRVISAVGKQ 186
                 6999****999986...44566788888888888876 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.015
                 CTTS-EEEEESSSS--TTTTTTSTT CS
        Thi4  39 kpdlkvailersvspGGGawlGGql 63 
                 + d k+ ++ r vspG G+w  G l
  KKY14947.1 403 DRDYKLNLVKRAVSPGIGIWVLGSL 427
                 458999**************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 2788.85
//
Query:       KKY14948.1  [L=246]
Description: putative amp-binding enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-32  110.6   0.1    8.6e-32  110.3   0.1    1.1  1  AMP-binding    AMP-binding enzyme
      1e-11   45.6   0.0    1.8e-11   44.8   0.0    1.4  1  AMP-binding_C  AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
      0.032   13.4   0.0      0.045   12.9   0.0    1.2  1  DUF2950        Protein of unknown function (DUF2950)
       0.13   12.6   1.0        3.8    8.1   0.1    3.2  4  Reg_prop       Two component regulator propeller


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   0.1   1.9e-35   8.6e-32     306     422 ..       8     127 ..       2     128 .. 0.87

  Alignments for each domain:
  == domain 1  score: 110.3 bits;  conditional E-value: 1.9e-35
                  HHTCEEEEEEEEGGGSSECEE.CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEE.T.CC.EEEEE CS
  AMP-binding 306 lfgeevlegYGlTEttgvvtv.lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafds.e.gr.wlrTG 399
                  l+ +e+  +YGlTE+++ +++  +++  ++kl +vG  +p++ +k+vD + g+ vp g++Gel++ g ++  gY+++pe+tae+++  e g  wl+TG
   KKY14948.1   8 LGMTEFTSSYGLTEASPTCFNaYHDDSIDRKLTTVGNLMPHALAKVVDRH-GNIVPVGTKGELWMAGYQLQAGYWNNPERTAETMTRdEnGIlWLHTG 104
                  44447899***********65533344456889****************9.**********************************96544558***** PP

                  EEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 400 DlgrldedGyleivgRkkdlikl 422
                  D ++++++G+  i+gR kd+i++
   KKY14948.1 105 DEVVFHPNGTCTITGRFKDIIIR 127
                  *********************86 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   4.1e-15   1.8e-11       1      76 []     136     221 ..     136     221 .. 0.88

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 4.1e-15
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE---..---...HHHHHHHHHHHHT-TTTS-SEEE.E-S-.....--B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg..sea...leeeLkahvrkelgpyavpkkvv.fvde.....lpktrsGK 76 
                    evE+ l++hp Va a VvG++d+  Ge++ af   + g    +    +++++a+ r +lg +++p ++  f de     +p+t sGK
     KKY14948.1 136 EVEERLAEHPSVARAIVVGIKDDHYGEVVGAFLEQRGGtsA-QtrpQDDDIRAFTRLKLGRHKAPTHIFwFGDEdvpatIPLTGSGK 221
                    8*******************************998755541.245589******************999888877888899999998 PP

>> DUF2950  Protein of unknown function (DUF2950)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     1e-05     0.045      62     109 ..     192     239 ..     160     243 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1e-05
     DUF2950  62 eieeeeekkavlavGkdewtlpiPlvkkgkkWaFdtkagkeEiltRri 109
                 ++ ++++ + ++ +G+++ +  iPl+ +gk  +F++++  eEi++Rr+
  KKY14948.1 192 KLGRHKAPTHIFWFGDEDVPATIPLTGSGKVKKFEMAKTGEEIVRRRM 239
                 45566777888999********************************97 PP

>> Reg_prop  Two component regulator propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         4   1.8e+04      12      18 ..      54      60 ..      49      61 .. 0.79
   2 ?    1.3   0.0      0.13   5.9e+02      15      23 ..      66      74 ..      63      75 .. 0.83
   3 ?    8.1   0.1   0.00085       3.8       9      23 ..      90     104 ..      81     105 .. 0.83
   4 ?   -2.8   0.0         3   1.3e+04      18      23 ..     203     208 ..     201     209 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4
                E-TTSCE CS
    Reg_prop 12 eDsdGrl 18
                 D+ G++
  KKY14948.1 54 VDRHGNI 60
                4999987 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.13
                TSCEEEEES CS
    Reg_prop 15 dGrlWvGte 23
                +G lW++++
  KKY14948.1 66 KGELWMAGY 74
                699***997 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00085
                 EEEE-TTSCEEEEES CS
    Reg_prop   9 aileDsdGrlWvGte 23 
                 ++ +D +G lW+ t 
  KKY14948.1  90 TMTRDENGILWLHTG 104
                 6889********996 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 3
                 EEEEES CS
    Reg_prop  18 lWvGte 23 
                  W+G e
  KKY14948.1 203 FWFGDE 208
                 6*9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.30s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1629.88
//
Query:       KKY14949.1  [L=390]
Description: putative nf-x1-type zinc finger protein nfxl1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-16   60.3   0.6    9.3e-16   57.6   0.0    2.3  2  R3H       R3H domain
     0.0055   17.5   0.0      0.016   16.0   0.0    1.8  1  KIAA1430  KIAA1430 homologue


Domain annotation for each model (and alignments):
>> R3H  R3H domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0     1e-19   9.3e-16       3      60 .]      80     138 ..      78     138 .. 0.89
   2 ?    0.1   0.1     0.092   8.3e+02      18      38 ..     223     244 ..     200     247 .. 0.81

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 1e-19
                 HHHHHHHHHHHHH-.S--EEE-----SHHHHHHHHHHHHSSEEEEEE--SS-SEEEEEE CS
         R3H   3 llrvekklaefvkd.tgrslefppmssyeRriiHelaeaygleseSvGeepkRrvvvtk 60 
                  ++ e  l+ f+ d t+++l f+pm   +R +iH lae++g+ seSv+ ep+R+vv++k
  KKY14949.1  80 THAQETTLRIFAADeTEKRLRFKPMKTGQRAFIHSLAEDFGIDSESVDPEPHRHVVLFK 138
                 556677888899773589***************************************97 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.092
                 --EEE----.-SHHHHHHHHHH CS
         R3H  18 grslefppm.ssyeRriiHela 38 
                 +  + + p+ ss eR++  +l+
  KKY14949.1 223 RDAIALIPLpSSSERQLQQQLL 244
                 45677778889*****998886 PP

>> KIAA1430  KIAA1430 homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.8e-06     0.016      65     101 ..     316     366 ..     294     367 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.8e-06
    KIAA1430  65 ssqsqksktasksl..............naenrkkelqkIeeENqkllkRl 101
                 s +s+++  ++ks+              ++++rk+e ++I++EN+++ k++
  KKY14949.1 316 SASSRRPVPQQKSVgerpvytvlgsklaAHKKRKEEEERIARENEQFEKKI 366
                 444555555556668888888889999899*******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       885  (0.0493614); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2436.63
//
Query:       KKY14950.1  [L=172]
Description: putative cyclin-dependent protein kinase complex component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-26   91.8   0.1    9.7e-26   91.1   0.1    1.3  1  Cyclin    Cyclin


Domain annotation for each model (and alignments):
>> Cyclin  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   0.1   5.4e-30   9.7e-26      98     161 .]      50     113 ..      43     113 .. 0.96

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 5.4e-30
                 .H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHTS-HHHHHHHHHHHHHHTTT-- CS
      Cyclin  98 cvsealvvtsanihRllivallvatKflvDlsysnekfakvggislkELnkLEidFlflvdFdl 161
                  +s+ +vv+s+nihRl+i++++ a+Kf++D++y+n+++akvgg++l+ELn+LE++Fl+l+dF+l
  KKY14950.1  50 SLSQFFVVDSFNIHRLVIAGVTCASKFFSDVFYTNSRYAKVGGLPLAELNHLELQFLLLNDFRL 113
                 57899*********************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.29s 00:00:00.71 Elapsed: 00:00:00.46
# Mc/sec: 1126.32
//
Query:       KKY14951.1  [L=234]
Description: putative proteasome component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-49  168.5   0.3    1.3e-49  168.3   0.3    1.0  1  Proteasome    Proteasome subunit
     0.0094   16.2   0.0      0.015   15.5   0.0    1.3  1  Flavodoxin_1  Flavodoxin


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.3   0.3   1.4e-53   1.3e-49       1     189 [.      26     207 ..      26     208 .. 0.97

  Alignments for each domain:
  == domain 1  score: 168.3 bits;  conditional E-value: 1.4e-53
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHC CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrs 99 
                 v+ Gt++++i++kdgv+l+ad+r+t+g++++++ t +K+ +++d+i+++ +G+aaD++++++++++++ +y +++g+p++++     vaa l ++++++
  KKY14951.1  26 VNLGTSIMAITFKDGVILGADSRTTTGAYIANRVT-DKLTHVHDTIWCCRSGSAADTQAVADIVQYHLGMYGIQNGEPPTTQ-----VAAALFQELCYD 118
                 689***************************88886.**********************************************.....************ PP

                 TTTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEE CS
  Proteasome 100 grrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievav 189
                 ++ ++ ++l+iag+d++ g ++y+i   Gs++++k ++  Gsgs++++++++++++e++t+ee+v++++++l+ea++ d +sg+ i+++v
  KKY14951.1 119 NKDMLSAGLIIAGYDKRHGGQVYSIPLGGSLHKHK-YAIGGSGSTYIYGYCDAHWTENMTEEEGVKFVKSSLQEAIKWDGSSGGVIRMVV 207
                 **********************************8.88888*********************************************9998 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.7e-06     0.015       4     123 ..      46     186 ..      45     206 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.7e-06
                   ETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSC....GGGGGTHSEEEEEEEEETTTBEEGGGH.HHHHHHHHHHCHH................ CS
  Flavodoxin_1   4 gSetGnteklAkqlaeelgehgfnadvvslsdydes....lseieeealllvvtsTfgnGdppenge.sffqdllelkgde................ 79 
                   +S t +   +A+++ ++l  h ++ ++ + +  + +    + +i ++ l + ++    nG+pp +       +       e                
    KKY14951.1  46 DSRTTTGAYIANRVTDKLT-HVHD-TIWCCRSGSAAdtqaVADIVQYHLGMYGIQ---NGEPPTTQVaAALFQ-------Elcydnkdmlsagliia 130
                   58999999**********9.6765.67666655544567999********99999...*****7755322222.......223445569******** PP

                   .............GCCSTTTTEEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEEES CS
  Flavodoxin_1  80 .............ledgdlsgvrfavfglGdsayenFcaagkkldekleelGaerll 123
                                   g l + ++a+ g G++  +++c+a +  +++ ee G++++ 
    KKY14951.1 131 gydkrhggqvysiPLGGSLHKHKYAIGGSGSTYIYGYCDA-HWTENMTEEEGVKFVK 186
                   *************66699********************98.4567777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 1473.62
//
Query:       KKY14952.1  [L=307]
Description: putative bem46 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-17   63.0   0.0    2.2e-11   43.5   0.0    2.2  2  Hydrolase_4    Serine aminopeptidase, S33
    3.6e-12   46.5   0.2    3.2e-08   33.5   0.0    2.4  3  Abhydrolase_1  alpha/beta hydrolase fold
    1.6e-08   33.6   0.0      0.083   11.6   0.1    3.1  3  AXE1           Acetyl xylan esterase (AXE1)
      1e-06   29.5   0.0    1.5e-06   29.0   0.0    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family
    4.4e-05   22.6   0.0    6.2e-05   22.1   0.0    1.1  1  DUF818         Chlamydia CHLPS protein (DUF818)
    0.00019   21.0   0.0     0.0019   17.7   0.0    2.1  1  Peptidase_S9   Prolyl oligopeptidase family
     0.0002   21.1   0.0    0.00076   19.2   0.0    1.8  2  FSH1           Serine hydrolase (FSH1)
     0.0006   19.4   0.0     0.0093   15.5   0.0    2.3  1  DLH            Dienelactone hydrolase family
     0.0028   17.6   0.0       0.25   11.2   0.0    2.2  2  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal
  ------ inclusion threshold ------
      0.028   14.3   0.0       0.05   13.5   0.0    1.4  1  Abhydrolase_3  alpha/beta hydrolase fold
       0.19   11.3   0.0        3.8    7.0   0.0    2.1  2  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
       0.19   11.6   0.0       0.31   10.9   0.0    1.3  1  Lipase_3       Lipase (class 3)


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   1.5e-14   2.2e-11       6     136 ..      89     222 ..      86     225 .. 0.88
   2 !   17.5   0.0   1.2e-06    0.0019     188     233 ..     227     273 ..     222     275 .. 0.92

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 1.5e-14
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaq.GfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpel..plfllGhSmGGliallyllrypd. 99 
                  +++++HG a  +g    +++ + +  G +v++l +rG+G s       p+ + +v D++++++ ++++++ +  +++++G+S+GG++a+ ++ r++  
   KKY14952.1  89 TILMFHGNAGNIGHRLPIGKIFSDSlGCNVLMLEYRGYGLS----TGTPDEKGLVIDAQTALDYIRDRKELRdtKIVIYGQSLGGAVAVDLVSRNRGa 182
                  68899999999999999999998755***************....34789****************87776667******************777665 PP

  Hydrolase_4 100 ..kvaglilsaPalkikaklk.appllklllkllgkllpk 136
                     +aglil +++l+ik++++ a p ++ l++l  + +p+
   KKY14952.1 183 ekVLAGLILDNTFLSIKKMIPaAFPPARYLARLCHQYWPS 222
                  64567*************9999999999999999999886 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 1.2e-06
  Hydrolase_4 188 akit.lPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHe 233
                  +kit +P+l+++G +D++v+p+  r+ly+  ++k+k  +  p++ H+
   KKY14952.1 227 PKITdVPILFISGLKDEIVPPSHMRQLYDLSRAKKKIWRALPNGTHD 273
                  66777***************************************996 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   2.1e-11   3.2e-08       2     106 ..      89     194 ..      88     212 .. 0.84
   2 !   11.0   0.0   0.00016      0.24     196     251 ..     215     273 ..     204     279 .. 0.69
   3 ?   -3.5   0.0       4.1   6.2e+03      29      44 ..     285     300 ..     281     304 .. 0.82

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 2.1e-11
                    EEEEE-STTTCGGGGTTGHHHHHHHHT.TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHH..HHHCTTSSEEEEEETHHHHHHHHHHHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd.gfdvillDlrGvgySspapacinddygtasvaddldri..ldalgddkltlvGhSmGGmialayaaey 94 
                    +++++hG +g+ +      +++ ++++ g+ v++l  rG+g S+  p+   +    ++ +  ld+i  +  l d k+++ G+S+GG++a  + +++
     KKY14952.1  89 TILMFHGNAGNIGHRLP--IGKIFSDSlGCNVLMLEYRGYGLSTGTPD---EKGLVIDAQTALDYIrdRKELRDTKIVIYGQSLGGAVAVDLVSRN 179
                    589*******8887666..777777778********************...5667778********9999************************** PP

                    ...GGGEEEEEEESE CS
  Abhydrolase_1  95 ...perVkalvllga 106
                        +  ++l+l+++
     KKY14952.1 180 rgaEKVLAGLILDNT 194
                    997777778899888 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00016
                    CHHHHHHHHHCTHHHHS.EEEEEEETTCSSSCHHHHHHHHHCHTS..EEEEEEETCSSS CS
  Abhydrolase_1 196 dsaklllrlrelknvla.ptlvisgtsDplvppkaledlaqllpk..krlvvisdagHl 251
                    ++++++ + +++ +++  p+l+isg +D +vpp+++++l +l +   k +++++++ H+
     KKY14952.1 215 LCHQYWPSEESIPKITDvPILFISGLKDEIVPPSHMRQLYDLSRAkkKIWRALPNGTHD 273
                    444455444444444445***************99999988844433667777777665 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 4.1
                    TSEEEEEEETTSTTSS CS
  Abhydrolase_1  29 gfdvillDlrGvgySs 44 
                     f++++ D++G+  S+
     KKY14952.1 285 VFEFLMGDVMGYKLSQ 300
                    689999*****99886 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00054      0.81      58     122 ..      61     128 ..      47     139 .. 0.80
   2 !   11.6   0.1   5.5e-05     0.083     154     203 ..     138     187 ..     136     198 .. 0.86
   3 !   10.4   0.0   0.00013      0.19     258     300 ..     230     273 ..     224     289 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00054
                 EEEEEEGGGEEEEEEEEEES.SSSSEEE.EEEEE-TT--..GGGHHHHHHHHHTT-EEEEEE-TTTS. CS
        AXE1  58 dltfegvrgarikaklvlPkekeeklPa.vvefhGYegs..rgeihdllnyaaaGyavvvmdvRGqgg 122
                 dl   ++ ++ ++a l++P++++   P+ ++ fhG  g+  +  +  +++  + G  v++++ RG g 
  KKY14952.1  61 DLHIPTSDNESLHAYLLRPANHSIAQPItILMFHGNAGNigHRLPIGKIFSDSLGCNVLMLEYRGYGL 128
                 77778889999****************74789****9995456688999999*************983 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 5.5e-05
                 HHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHH-SS-SEEEE CS
        AXE1 154 vflDavrlveivaslpevDeeRvavlGasqGGalalavaalekrikavva 203
                 + +Da  +++ +++ +e  +++++++G+s GGa+a+   + ++ +++v+a
  KKY14952.1 138 LVIDAQTALDYIRDRKELRDTKIVIYGQSLGGAVAVDLVSRNRGAEKVLA 187
                 678********************************988777776666665 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00013
                 --S-EEEEEETT-SSS-HHHHHHHHHH--SSEEE.EEETT-STT CS
        AXE1 258 vkaevllsvgLeDevcpPstvfaaynkletekei.kvyeefahe 300
                 + +++l++ gL+De+ pPs +  +y+   ++k+i +  ++  h+
  KKY14952.1 230 TDVPILFISGLKDEIVPPSHMRQLYDLSRAKKKIwRALPNGTHD 273
                 56899*********************999998773556666665 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0     1e-09   1.5e-06       1     136 [.      90     238 ..      90     290 .. 0.57

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1e-09
                    EEEE--GC............GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHHCHHHHHHHCCTT......TTSEEEEEETCHHHHHHHHHHC CS
  Abhydrolase_6   1 vlllHGagss.......assWlvapLaallaagvhvlapDlpGhGrsdpppldledladlaalldelaa....gggpvvlvGHSlGGalalaaapl 85 
                    +l+ HG  ++       + ++  ++L      g+ vl++ ++G+G s++ p++   + d   +ld +++    ++ ++v+ G SlGGa+a  +++ 
     KKY14952.1  90 ILMFHGNAGNighrlpiGKIF-SDSL------GCNVLMLEYRGYGLSTGTPDEKGLVIDAQTALDYIRDrkelRDTKIVIYGQSLGGAVAVDLVSR 178
                    566777333222223333333.3355......8999********9666666555556666555555555555789999**************7777 PP

                    C.......EEEEES-..----TTT.....S----TTHHHHHHTT-CCCCHCCH......S-HSCCCC CS
  Abhydrolase_6  86 a.....lvvgvlldppptalpagl.....laaalelllallallrllawlsre......plprlfla 136
                          +++g++ld        ++     + +a+ +++++la+l + +w+s+e      ++p lf++
     KKY14952.1 179 NrgaekVLAGLILDN-------TFlsikkMIPAAFPPARYLARLCHQYWPSEEsipkitDVPILFIS 238
                    755555545544444.......342332222222222233333333677766655555422224444 PP

>> DUF818  Chlamydia CHLPS protein (DUF818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   4.1e-08   6.2e-05     167     235 ..     111     178 ..     101     200 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 4.1e-08
      DUF818 167 akllganilvfnYPGvmsskGeitrenlakayqaCvrYLrDkeqGPkakeiiayGYsLGtlvqaeaLsk 235
                 ++ lg n+l+  Y G   s+G  + + l+   q    Y+rD+++  +  +i+ yG sLG+ v    +s+
  KKY14952.1 111 SDSLGCNVLMLEYRGYGLSTGTPDEKGLVIDAQTALDYIRDRKELRD-TKIVIYGQSLGGAVAVDLVSR 178
                 67789************************************998755.67999********98766655 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.3e-06    0.0019      47     171 ..     141     259 ..     134     283 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.3e-06
                   HHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHH...H-GGG-SEEEEESE---CCCHHCSTTSTHH.HCCCC--TTTCHHHHHHHHHH-CGGG CS
  Peptidase_S9  47 DfiaaaealakegyvdserlaitGgSyGGyltgaaln...qrpdlFkaavaevpvvdvlrydsdtdllte.eymewgnpeeneegykelspyspldn 139
                   D  +a++++ +++    ++++i+G S GG ++  ++     + ++ ++++  + ++   ++      + + +y    ++     +y+   +  p + 
    KKY14952.1 141 DAQTALDYIRDRKELRDTKIVIYGQSLGGAVAVDLVSrnrGAEKVLAGLILDNTFLSIKKMIPAA--FPPaRYLARLCH-----QYWPSEESIP-KI 229
                   88899************************999888773233456777777777777777777776..999999999997.....6855544444.44 PP

                   -----EEEEEEETT-SSS-THHHHHHHHHHH- CS
  Peptidase_S9 140 vkaypplLlihGlaDdrvppaealklvaaLqk 171
                      ++p+L+i Gl+D+ vpp++  +l++  + 
    KKY14952.1 230 --TDVPILFISGLKDEIVPPSHMRQLYDLSRA 259
                   ..69*******************999986553 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.2   1.7e+03       3      14 ..      86      97 ..      84     100 .. 0.80
   2 !   19.2   0.0   5.1e-07   0.00076      80     192 ..     136     262 ..     122     272 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.2
        FSH1  3 kkkkiLcLhGyt 14
                ++ +iL++hG +
  KKY14952.1 86 QPITILMFHGNA 97
                5789******86 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 5.1e-07
        FSH1  80 kneyegleesldavkdyikengpfdGiiGFSqGaalaallaslleellkea........shpslkfailvsGfkleepk.....yeeyy.eedki.... 160
                 k+ +++ + +ld+++d  + +     i G S G+a+a  l+s  +  +k          +  s+k +i ++   +   +       +y  +e++i    
  KKY14952.1 136 KGLVIDAQTALDYIRDRKELRDTKIVIYGQSLGGAVAVDLVSRNRGAEK-VlaglildnTFLSIKKMIPAAFPPA---RylarlCHQYWpSEESIpkit 230
                 6667788888999999888888888999999999999998887775444.2366666544444455554433222...123354333346566666668 PP

        FSH1 161 qtptLhvlGelDtvvdeerseaLaeafknssk 192
                  +p+L++ G +D++v+++ +++L++  + ++k
  KKY14952.1 231 DVPILFISGLKDEIVPPSHMRQLYDLSRAKKK 262
                 9***********************98877654 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   6.2e-06    0.0093      77     173 ..     137     260 ..     127     265 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.2e-06
         DLH  77 kvlddlkaavaylksvpevstkkvgvvGfCmGGalalllaaevpevdaavafYG.............................lspekeleeaakikap 146
                  ++ d++ a++y++ ++e  + k+++ G  +GGa+a++l +++  ++ ++a  G                             +  ++e +  +   +p
  KKY14952.1 137 GLVIDAQTALDYIRDRKELRDTKIVIYGQSLGGAVAVDLVSRNRGAEKVLA--GlildntflsikkmipaafpparylarlchQYWPSEESIPKITDVP 233
                 44556779**********************************965555554..4556778999999999999999999999987778888888888999 PP

         DLH 147 ilalfgeeDefipadevekleealkaa 173
                 il++ g +De++p +++ +l    +a+
  KKY14952.1 234 ILFISGLKDEIVPPSHMRQLYDLSRAK 260
                 999999999999999988887655554 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00017      0.25       7      40 ..     143     176 ..     142     187 .. 0.89
   2 ?    4.2   0.0     0.023        35     114     135 ..     230     251 ..     212     267 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00017
                 HHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHH CS
      BAAT_C   7 eeainyllrhpkvkkdkigllGiSkGgelallla 40 
                 + a++y++++ ++   ki ++G+S Gg +a+ l 
  KKY14952.1 143 QTALDYIRDRKELRDTKIVIYGQSLGGAVAVDLV 176
                 5799************************998765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.023
                 --SEEEEEEETT-SSS-HHHHH CS
      BAAT_C 114 akgpillvvgedDknwpSkesa 135
                 ++ pil+++g +D+++p +++ 
  KKY14952.1 230 TDVPILFISGLKDEIVPPSHMR 251
                 489*************988776 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.3e-05      0.05      24     104 ..     110     190 ..      90     204 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.3e-05
                    HHHHHTSEEEEEE--...-TTTS-TT.HHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEE CS
  Abhydrolase_3  24 lakelgavvvsvdYr...lAPehpfP.aavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardegepkvagqv 104
                    +++ lg+ v++ +Yr   l+  +p     v da +al +++++   +++  ++iv+ G+S GG  a  ++ r r ++   +ag++
     KKY14952.1 110 FSDSLGCNVLMLEYRgygLSTGTPDEkGLVIDAQTALDYIRDR---KELRDTKIVIYGQSLGGAVAVDLVSRNRGAE-KVLAGLI 190
                    5566777777777775444444443314577999999999999...5899******************999998874.4455555 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.087   1.3e+02      60     128 ..     118     185 ..     106     190 .. 0.86
   2 ?    7.0   0.0    0.0025       3.8     213     267 ..     218     272 ..     213     274 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.087
                    EEEEE-TTSTTS-S---TTTTTHHHHHHHHHHHHHHC.TTEEEEEEEEEECHHHHHHHHHCTT--TTEEE CS
  Peptidase_S15  60 vVvqdvrGtggSeGeftvgdsdeaedgadvidWlakq.pwsnGkVgmtGiSYlGttqllaaatgvpalka 128
                    v++ + rG g S+G  +   +  + d+  ++d ++   +  + k+  +G S +G +++ + +++  a k+
     KKY14952.1 118 VLMLEYRGYGLSTGTPDE--KGLVIDAQTALDYIRDRkELRDTKIVIYGQSLGGAVAVDLVSRNRGAEKV 185
                    6777899999****9998..8899999999****998899999***********9999888777666555 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0025
                    HHHHTT-HHHHHCT--S-EEEEEECCSSTTC.CHHHHHHHHHCCTT-.EEEEECECT CS
  Peptidase_S15 213 afWkdrnlsedadkvkapvllvgGwnDwnvk.ngaiklyealkapgv.klilgpwtH 267
                    ++W + +     +  ++p+l+++G+ D++v   ++ +ly+  +a+++    l ++tH
     KKY14952.1 218 QYWPSEESIP--KITDVPILFISGLKDEIVPpSHMRQLYDLSRAKKKiWRALPNGTH 272
                    5555555443..55789**************99999999999998866555667776 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00021      0.31      61      80 ..     154     173 ..     107     180 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00021
                 HTT-EEEEEEEETHHHHHHH CS
    Lipase_3  61 kypeysivvtGHSLGgalAl 80 
                 + ++++iv+ G SLGga+A+
  KKY14952.1 154 ELRDTKIVIYGQSLGGAVAV 173
                 33499*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 1851.05
//
Query:       KKY14953.1  [L=206]
Description: putative phosphatidylethanolamine-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-16   59.4   0.0    4.8e-16   59.3   0.0    1.2  1  PBP       Phosphatidylethanolamine-binding protein


Domain annotation for each model (and alignments):
>> PBP  Phosphatidylethanolamine-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   2.7e-20   4.8e-16      21     132 .]      70     198 ..      20     198 .. 0.74

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 2.7e-20
                 -TTSSEEEEEEEETTS.....CCTCTTEEEEEEEEEETTSSEE-TTC.....EE-B-TTSSCCCCS---B--STTS..EEEEEEEEEESSSG....... CS
         PBP  21 pegtksyalvviDpDa.....pkvsetflHwvvtnipasvtslpega.....vqgknslgeesesgYlgpcPpkgdgkHrYvfllyaldvea....... 102
                 p++   y+l ++DpDa     p +se + Hw+vtn++     +p+ a     +   n+ + ++  +Yl+p+Pp+++g+HrYvf+l a + ea       
  KKY14953.1  70 PSEDLIYTLALTDPDAksrynPIWSE-MAHWIVTNLT----LIPNIAspsdhF-SFNDISPSTLLPYLPPSPPPKTGPHRYVFVLLAGTPEAtaklipp 162
                 556777**********9999988999.*********9....333322222322.22333333445*********************6443335666777 PP

                 ....--.BGSS-SHHHHHHH.HCTTEEEEEEEEEEE CS
         PBP 103 ....ld.lkagftraelgaa.iaghvlakatlagnY 132
                     +  +++g++++++g++ +a+ + + + + +n+
  KKY14953.1 163 kkskEGrQHWGYDEERTGVKkWAEDNGGLEIVGVNF 198
                 776534588998878888888997777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.48
# Mc/sec: 1297.26
//
Query:       KKY14954.1  [L=452]
Description: putative upd c transporter (mnn2-2) [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-89  298.8  12.4    4.8e-89  298.5  12.4    1.1  1  UAA             UAA transporter family
    5.1e-07   29.2   4.1    5.2e-06   25.9   4.2    2.1  2  Nuc_sug_transp  Nucleotide-sugar transporter
     0.0011   18.6   7.2     0.0064   16.0   0.4    2.2  2  SLC35F          Solute carrier family 35
     0.0074   16.5  34.0       0.38   10.9   6.2    3.8  3  EamA            EamA-like transporter family
  ------ inclusion threshold ------
      0.052   13.8   0.2       0.19   12.0   0.2    1.9  1  DUF2644         Protein of unknown function (DUF2644)
        2.7    7.2  12.3       0.59    9.4   3.3    2.6  2  TPT             Triose-phosphate Transporter family


Domain annotation for each model (and alignments):
>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.5  12.4   1.6e-92   4.8e-89       4     300 ..      42     378 ..      39     380 .. 0.96

  Alignments for each domain:
  == domain 1  score: 298.5 bits;  conditional E-value: 1.6e-92
         UAA   4 lavslvfvgccsnvvllElivkeepkafgnlltfvqflfvalegllesid........ilkkrkiPlktYvilvalffitsvlnnealkydisvPvhii 94 
                 l++sl+f+gcc nv +lE +++e p++ g+l+tf+qfl+ +l+ l++  +        +lk+r iP ++++i  a+f+++++lnn+a++y+is+P+h+i
  KKY14954.1  42 LMLSLIFGGCCANVLALEALIREVPGS-GTLITFAQFLLTSLVTLPNYVSwsrgsrnfYLKERGIPFRKWLIYTAFFVTINILNNKAFDYKISLPLHVI 139
                 799************************.******************9998877766655**************************************** PP

         UAA  95 frssklipvmilGililgkrYsllqylsvllltlGviiftllsakdk..............kedskeslnkfllGiallvlallldavlglvqeklykk 179
                 +rs++ ++ m +G l+  +rYs+ q+ +v+llt+Gv++++l++a+ k               + +++ +  +++G++ l++alll+a++g++++++y++
  KKY14954.1 140 LRSAGPVTSMSVGFLFG-RRYSKTQIFAVFLLTIGVVLAALADAQAKgskisftnnaakdtFKSTQSRPDSSTTGFIFLFVALLLSALMGVYTDRVYSR 237
                 *************9987.***********************999999**********999866678889999*************************** PP

         UAA 180 ygk.hskealfyshllslplflllqgellsavkflsesedval...................lslpsklfylllnvltqyvcikgVlilisefgaltvt 258
                 yg  h+ e+lfysh lslplf++ +++l  ++ +++ s+++++                   ls+ps+ + llln+ltqy+ci+gV++l +++++ltvt
  KKY14954.1 238 YGRnHWGENLFYSHTLSLPLFFFQYSDLKFEFSKMLLSQPLTIfttpttsaqlshslipsliLSIPSQPIFLLLNALTQYLCIRGVNLLSAKSSSLTVT 336
                 *963788******************************************************************************************** PP

         UAA 259 lvltlRKfvslllSillFknpltlqhlvgtllVflglllysy 300
                 +vl++RK+vslllSi+lF+n+l    ++g+++Vflg+ +y++
  KKY14954.1 337 IVLNVRKLVSLLLSIWLFGNKLPTGVMIGAIIVFLGAGIYAL 378
                 **************************************9986 PP

>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   4.2   1.7e-09   5.2e-06     108     213 ..     126     248 ..     111     377 .. 0.85
   2 ?    1.0   0.9     0.065   1.9e+02      85     163 ..     299     386 ..     248     411 .. 0.57

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.7e-09
  Nuc_sug_transp 108 daatyqvtyqlkil......ttalfsvllLkrklskkqWlslllLvaGvalvqlkqkeseesekaaaaa...........keensvlGliavlaa 185
                     +a  y+++  l ++       t++   +l +r+ sk+q ++++lL++Gv+l  l++++++ s+ + +++           + ++s +G+i + +a
      KKY14954.1 126 KAFDYKISLPLHVIlrsagpVTSMSVGFLFGRRYSKTQIFAVFLLTIGVVLAALADAQAKGSKISFTNNaakdtfkstqsRPDSSTTGFIFLFVA 220
                     455666666666542222224667777889*********************9999988877765444335688999998878899********** PP

  Nuc_sug_transp 186 cllsgfaGvYfekiLkdsnvslWirniq 213
                      lls++ GvY +++        W  n+ 
      KKY14954.1 221 LLLSALMGVYTDRVYSRYGRNHWGENLF 248
                     **************99999999988874 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.065
  Nuc_sug_transp  85 klavPsl.iYtvqnnl.lyvals...nLda..atyqvtyqlki..lttalfsvllLkrklskkqWlslllLvaGvalvqlkqkesees 163
                      l++Ps  i+ + n l +y+ +     L a  ++ +vt  l +  l   l+s+ l + kl +   +  +++++G  +  l +++s+++
      KKY14954.1 299 ILSIPSQpIFLLLNALtQYLCIRgvnLLSAksSSLTVTIVLNVrkLVSLLLSIWLFGNKLPTGVMIGAIIVFLGAGIYALPKSKSTTT 386
                     4555553355555554335543311023331134445554444324555666666666666666666666666666655555555554 PP

>> SLC35F  Solute carrier family 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.4   2.2e-06    0.0064      13     162 ..      42     196 ..      33     202 .. 0.69
   2 !    5.6   1.6    0.0033       9.7     235     298 ..     314     377 ..     301     378 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.2e-06
      SLC35F  13 qvlsll...itataltskylaekkinaPvlqtflnyvllalvyt.gillfrrgaeklleilkr.kwykylllalvdveanylvvkayqytsltsvq.ll 105
                  +lsl+   ++a+ l  + l ++     +l tf ++ l  lv    ++ + rg+ +++   +   + k+l+++ + v  n l  ka+ y   + ++ +l
  KKY14954.1  42 LMLSLIfggCCANVLALEALIREVPGSGTLITFAQFLLTSLVTLpNYVSWSRGSRNFYLKERGiPFRKWLIYTAFFVTINILNNKAFDYKISLPLHvIL 140
                 46666622234555555666666666777888888888888865156778888877664333313457889999999************8666655156 PP

      SLC35F 106 dcfaipvvlvlswlflkvryrlvkiigvvvcilGvvllvvsdvlagrransgsnpvl 162
                  + + ++ + + +lf   ry  ++i +v++  +Gvvl   +d  a   + s +n+  
  KKY14954.1 141 RSAGPVTSMSVGFLF-GRRYSKTQIFAVFLLTIGVVLAALADAQAKGSKISFTNNAA 196
                 666666666666666.67************************998666656666555 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0033
      SLC35F 235 lvlfllysllpilikktsatsvnlslltsdlyslliglflfhykvswlyllafvviliGlilys 298
                 l+ +l    + +l  k+s+ +v++ l    l sll+ ++lf++k+    ++  +++ +G  +y+
  KKY14954.1 314 LTQYLCIRGVNLLSAKSSSLTVTIVLNVRKLVSLLLSIWLFGNKLPTGVMIGAIIVFLGAGIYA 377
                 555555556778888999999************************9999999999999988885 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.7     0.017        52      58     107 ..      31      82 ..      23      88 .. 0.81
   2 !   10.9   6.2   0.00013      0.38      33     135 ..      72     177 ..      68     179 .. 0.84
   3 !   10.5  15.3   0.00017      0.51       3     133 ..     213     374 ..     211     378 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.017
        EamA  58 klslkdwlll.lllgl.lgtvlafllffyalkktsasnaslitslePvftli 107
                 + +l +wl + l l+l +g+++a++l + al +  ++  +lit+ + ++t +
  KKY14954.1  31 QATLPQWLTVsLMLSLiFGGCCANVLALEALIREVPGSGTLITFAQFLLTSL 82 
                 55666777776544444**************************999999977 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00013
        EamA  33 ltfvrfliagillliiallkegklaklslkd.....wllllllgllgtvlafllffyalkk.tsasnaslitslePvftlilsvlllgekltlkqllgi 125
                 +tf +fl+ +++ l+ ++ + +  +++ lk+      ++l+++++  +v  ++l ++a+ + +s    +++ s  Pv ++  ++l+ g + +++q++++
  KKY14954.1  72 ITFAQFLLTSLVTLPNYVSWSRGSRNFYLKErgipfRKWLIYTAF--FVTINILNNKAFDYkISLPLHVILRSAGPVTSMSVGFLF-GRRYSKTQIFAV 167
                 8999***********999999988666666666666777888886..455568999999753888899999***************.************ PP

        EamA 126 vlillGvlli 135
                 +l  +Gv+l 
  KKY14954.1 168 FLLTIGVVLA 177
                 *******996 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00017
        EamA   3 gillallaalfwaiyfvlskillrkv...spl.tltfvrfliagilllii................allkegkl..aklslkdwllllllgl....... 72 
                 g +++++a l++a+++v+++++++++   + + + +f++ +++  l+++                 + ++  +   a+ls++ + + l+l++       
  KKY14954.1 213 GFIFLFVALLLSALMGVYTDRVYSRYgrnH-WgENLFYSHTLSLPLFFFQysdlkfefskmllsqpLTIFTTPTtsAQLSHSLIPS-LILSIpsqpifl 309
                 778888888889999999988888885542.2466666666555555444666666666666665533333333234444444444.444444555555 PP

        EamA  73 lgtvlafllffyalkktsas....naslitslePvftlilsvlllgekltlkqllgivlillGvl 133
                 l ++l+++l + +++ +sa     ++++++++  +++l+ls++l+g kl    ++g+++++lG+ 
  KKY14954.1 310 LLNALTQYLCIRGVNLLSAKssslTVTIVLNVRKLVSLLLSIWLFGNKLPTGVMIGAIIVFLGAG 374
                 999************999998888999************************************86 PP

>> DUF2644  Protein of unknown function (DUF2644)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   6.2e-05      0.19      11      38 ..     210     235 ..     203     238 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.2e-05
     DUF2644  11 STTafiQFfgalllagiLvyavyldrpy 38 
                 STT+fi  f alll++++   vy+dr y
  KKY14954.1 210 STTGFIFLFVALLLSALM--GVYTDRVY 235
                 9****************9..79999988 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   1.8     0.023        68      30     141 ..      68     183 ..      37     279 .. 0.69
   2 ?    9.4   3.3    0.0002      0.59     189     289 ..     273     376 ..     267     377 .. 0.64

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.023
         TPT  30 yPltvsavqllvgsvlilvlwal...glkkrpkisse...flkailplalvktlghvlavvsl.skvaVSfthtvKasePiFtvilsrlllgeklsllv 121
                   ++++ +q+l +s+++l+ +++   g ++   ++ +   f k ++  a++ t+ ++l + ++  k++     +++++ P+ +  +   l+g ++s + 
  KKY14954.1  68 SGTLITFAQFLLTSLVTLPNYVSwsrGSRN-FYLKERgipFRKWLIYTAFFVTI-NILNNKAFdYKISLPLHVILRSAGPVTSMSVGF-LFGRRYSKTQ 163
                 456788888888888887665552203333.22333345466667777766655.455555551577777777889999997776665.5666667777 PP

         TPT 122 ylsLlpivgGvalasvtEls 141
                 + ++  +  Gv+la++ +++
  KKY14954.1 164 IFAVFLLTIGVVLAALADAQ 183
                 77777788899999987754 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0002
         TPT 189 llllPvallvegvlktpsllkst....kvslkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavai 283
                 ll+ P++++++  +++ +l +s       s+ +  + lll+++  +l       + ++ s +t ++   v++ v++ ls+ +f+n++ +  +iG+ ++ 
  KKY14954.1 273 LLSQPLTIFTTP-TTSAQLSHSLipslILSIPSQPIFLLLNALTQYLCIRGVNLLSAKSSSLTVTIVLNVRKLVSLLLSIWLFGNKLPTGVMIGAIIVF 370
                 566666666665.22222222221211233333333444444554444443333445678999999999****************************** PP

         TPT 284 vGvflY 289
                 +G+ +Y
  KKY14954.1 371 LGAGIY 376
                 **9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 2829.01
//
Query:       KKY14955.1  [L=793]
Description: putative actin binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.3e-28   95.9   2.6    8.6e-14   50.9   0.2    2.4  2  SH3_1           SH3 domain
    2.9e-27   94.2   1.7    6.8e-13   48.3   0.1    2.5  2  SH3_9           Variant SH3 domain
    4.1e-16   58.9   0.0    1.3e-15   57.2   0.0    1.8  2  Cofilin_ADF     Cofilin/tropomyosin-type actin-binding protei
    2.4e-15   55.9   0.0    5.9e-08   32.3   0.0    2.9  3  SH3_2           Variant SH3 domain
     0.0033   17.8   0.6        3.8    7.9   0.1    2.6  2  FOG_N           Folded gastrulation N-terminus
  ------ inclusion threshold ------
      0.092   13.4   0.3       0.23   12.1   0.3    1.6  1  Fib_succ_major  Fibrobacter succinogenes major domain (Fib_su


Domain annotation for each model (and alignments):
>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.2   2.9e-17   8.6e-14       1      48 []     659     705 ..     659     705 .. 0.97
   2 !   45.0   0.2     2e-15   5.8e-12       3      48 .]     743     786 ..     741     786 .. 0.96

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 2.9e-17
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 iA YDY+a es+E+s+k+G+ ++ +++++++Ww g +   g+ Gl+Ps
  KKY14955.1 659 IAQYDYDADESNEISLKEGEHVTDIDMVDEDWWMGTNSQ-GQSGLFPS 705
                 7*************************************8.7******8 PP

  == domain 2  score: 45.0 bits;  conditional E-value: 2e-15
                 SSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   3 lYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 lYDYea es+ELsf +G +i+++   +d+Ww g+++  g+ Gl+P+
  KKY14955.1 743 LYDYEAAESNELSFPEGVKITNIVFPDDDWWMGEYN--GQSGLFPA 786
                 9***********************************..69*****6 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.1   2.3e-16   6.8e-13       1      49 []     660     709 ..     660     709 .. 0.97
   2 !   45.1   0.2   2.2e-15   6.7e-12       2      49 .]     743     790 ..     742     790 .. 0.98

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 2.3e-16
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegsl.tGrtGlvPanyve 49 
                 A y+y+++e  e+sL +G+ +t i++ +++W+ g++  G++Gl+P+nyve
  KKY14955.1 660 AQYDYDADESNEISLKEGEHVTDIDMVDEDWWMGTNsQGQSGLFPSNYVE 709
                 67*********************************99************7 PP

  == domain 2  score: 45.1 bits;  conditional E-value: 2.2e-15
       SH3_9   2 lypyepreddeLsLqrGDvitvieesedgWlegsltGrtGlvPanyve 49 
                 ly+ye+ e  eLs+++G  it+i  ++d+W+ g+++G++Gl+Panyv+
  KKY14955.1 743 LYDYEAAESNELSFPEGVKITNIVFPDDDWWMGEYNGQSGLFPANYVQ 790
                 8**********************999*********************7 PP

>> Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   4.4e-19   1.3e-15      24     121 .]      58     153 ..      50     153 .. 0.90
   2 ?   -1.9   0.0      0.95   2.9e+03      12      36 ..     654     682 ..     650     691 .. 0.64

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 4.4e-19
                  TTTEEEEEESS-.HHHHHHHHHHTTT-EEEEEEEEEECCSECCEEEEEEEEE--TTS-HHHHHHHHHHHHHHHHHCTTSEEEEEE-CGGCCSHHHHHH CS
  Cofilin_ADF  24 dkeeivveeege.tyeelreelpeseprYavydveyehddeskrsklvfIswvPdsapikqkmlyasskdalkkelkgisveieatdldelteeelke 120
                  ++  ++v+++ge ++ +l++e++++++++a+++v+   d +s ++k v+I+w+++++p ++k  + s+ +a+ k l+g++v++ a+++++lt+e + +
   KKY14955.1  58 KESVLKVQSTGEgELVDLIDEFSDGRIQFAFVKVK---DPNSGLPKNVLIAWCGEGVPERTKGYFTSHLTAVAKLLHGYHVQVTARSESDLTPERIVQ 152
                  33567888888898899*****************9...45577***************************************************9987 PP

                  H CS
  Cofilin_ADF 121 k 121
                  k
   KKY14955.1 153 K 153
                  6 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.95
                  T..SSEEEEEEECTT.TEEEEEESS-...H CS
  Cofilin_ADF  12 k.ktkyilfkidddk.eeivveeege...t 36 
                  k kt+ +++ +d d+ +ei ++e ge   +
   KKY14955.1 654 KgKTAIAQYDYDADEsNEISLKE-GEhvtD 682
                  34677888888877668898887.332343 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.7   5.1e+03      21      49 ..      70     119 ..      69     123 .. 0.50
   2 !   32.3   0.0     2e-11   5.9e-08       3      56 ..     659     710 ..     657     711 .. 0.86
   3 !   20.5   0.0   9.2e-08   0.00028       7      55 ..     745     790 ..     742     792 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.7
                 TEEEEEE...............EEEECT.........TE.EEEEECCCEEEE CS
       SH3_2  21 Gdvikvls.............lgskdsd.........gw.wegevgGrvGlf 49 
                 G+++ +++             +  kd++          w  eg   +++G+f
  KKY14955.1  70 GELVDLIDefsdgriqfafvkV--KDPNsglpknvliAWcGEGVPERTKGYF 119
                 6777777665555555555331..2222223333333454455446777776 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 2e-11
                 EESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE.CCCEEEEEGCGEEE CS
       SH3_2   3 raiedyvgedkseLsfkkGdvikvlslgskdsdgwwegev.gGrvGlfPsslvee 56 
                 +a  dy++   +e+s+k+G+ +  +   +  +++ww g++ +G+ GlfPs++ve 
  KKY14955.1 659 IAQYDYDADESNEISLKEGEHVTDI---DMVDEDWWMGTNsQGQSGLFPSNYVEL 710
                 56779***************55555...56666********************85 PP

  == domain 3  score: 20.5 bits;  conditional E-value: 9.2e-08
                 -B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEECCCEEEEEGCGEE CS
       SH3_2   7 dyvgedkseLsfkkGdvikvlslgskdsdgwwegevgGrvGlfPsslve 55 
                 dy+++  +eLsf +G  i  +      +d+ww ge++G+ GlfP ++v+
  KKY14955.1 745 DYEAAESNELSFPEGVKITNI---VFPDDDWWMGEYNGQSGLFPANYVQ 790
                 788888888888888555544...22466*******************8 PP

>> FOG_N  Folded gastrulation N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0013       3.8      51      75 ..     652     675 ..     639     689 .. 0.83
   2 !    7.3   0.0    0.0019       5.8      35      75 ..     716     757 ..     703     769 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0013
       FOG_N  51 gssssgavetdYDYedeesdelqld 75 
                 gs ++++ +++YDY+ +es+e++l+
  KKY14955.1 652 GS-KGKTAIAQYDYDADESNEISLK 675
                 34.4556889***********9875 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0019
       FOG_N  35 adillqeLqsll.adgggssssgavetdYDYedeesdelqld 75 
                 + + + e q++  ++++ + ++ + +  YDYe  es+el++ 
  KKY14955.1 716 DSVPASEVQTAApTEAAHTGQGATAISLYDYEAAESNELSFP 757
                 556677777777644444555666899***********9875 PP

>> Fib_succ_major  Fibrobacter succinogenes major domain (Fib_succ_major)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   7.7e-05      0.23       5      74 ..     688     772 ..     685     781 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.7e-05
  Fib_succ_major   5 sqvWMaeNlratky...........rdgtsieeveselasavaanasengaaygrlYnweavadargl.cPeGWhiPt....dedw 74 
                     + +WM  N + ++            +d +s++  e ++a+  +a ++ +ga+   lY +ea+  +++l  PeG +i +    d+dw
      KKY14955.1 688 EDWWMGTNSQGQSGlfpsnyvelveEDADSVPASEVQTAAPTEAAHTGQGATAISLYDYEAAE-SNELsFPEGVKITNivfpDDDW 772
                     679****9999887889888888887777777777755899999*****************77.77777*******9999998898 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5531.30
//
Query:       KKY14956.1  [L=1353]
Description: putative f-box domain containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.13   12.5   9.8       0.35   11.1   9.8    1.7  1  Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
       0.19   11.7   0.0       0.45   10.5   0.0    1.6  1  F-box          F-box domain
       0.31   11.0   5.9       0.68    9.8   5.9    1.5  1  MRP-S26        Mitochondrial ribosome subunit S26


Domain annotation for each model (and alignments):
>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   9.8   5.8e-05      0.35      41     109 ..     509     577 ..     507     592 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.8e-05
  Jnk-SapK_ap_N  41 lasrneeeeaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrele 109
                    l+s++e+ e +++el ++++ L+ + e++++++ + +   e+++ qwe  ++ l+ek+++  +e+ +++
     KKY14956.1 509 LLSQREAAEGREQELLKQNQLLQARAEERRQQEAQLQAAKENMDRQWEAMQQPLREKLKRYADEIIQVQ 577
                    6788999999*************************************************9999887766 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   7.5e-05      0.45       4      42 ..      78     116 ..      77     118 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.5e-05
                 HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHH CS
       F-box   4 srLPsevlrhILerLplsdllalrrVSkgwrilidsdrl 42 
                 s+LP e++  ++ +L + +l  l  V ++++ l+ +d+ 
  KKY14956.1  78 SELPGELWQYVFTFLAPPTLQHLLAVNRHFKGLLSMDKS 116
                 79*****************************99999875 PP

>> MRP-S26  Mitochondrial ribosome subunit S26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   5.9   0.00011      0.68      55     144 ..     501     588 ..     482     594 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00011
     MRP-S26  55 eeeelkkeseekaeeeeeefkellaiNdewNaelaelReerlkkeaeekkeeilerieekeqkeeekkekaeeevlqekeesktFITeeN 144
                 + + lk +++ + e  e + +ell+ N+   a+++e+R+++ + +a++++  +  + e+ +q  +ek ++   e+ q++  s   IT++N
  KKY14956.1 501 AWDVLKARLLSQREAAEGREQELLKQNQLLQARAEERRQQEAQLQAAKENMDR--QWEAMQQPLREKLKRYADEIIQVQWSSGASITRDN 588
                 5555666666777777779999*************999998887666555444..44455555679999999*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1347  (0.0751297); expected 358.6 (0.02)
Passed bias filter:                      721  (0.0402142); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.06u 0.29s 00:00:01.35 Elapsed: 00:00:00.49
# Mc/sec: 8332.19
//
Query:       KKY14957.1  [L=971]
Description: putative amp deaminase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   5.6e-121  403.9   0.1   7.4e-121  403.5   0.1    1.2  1  A_deaminase  Adenosine/AMP deaminase


Domain annotation for each model (and alignments):
>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  403.5   0.1  4.1e-125  7.4e-121       1     327 [.     387     792 ..     387     793 .. 0.99

  Alignments for each domain:
  == domain 1  score: 403.5 bits;  conditional E-value: 4.1e-125
                  TS-EEEEEEECCCSS-HHHHHHHHHHHCHT..SS-SCCCCCCCCHCHCCHHHHCCHCCCHHCCCHHHT.............................. CS
  A_deaminase   1 nlpKvdlHvHldgclnpktllrlakkkgikeldekvveedeklltlqekfesLkeflydlsvdvlvlh.............................. 68 
                  n++Kvd+HvH+++c+n+k+llr++k+k++k++de v+++d+ +ltl+ +fes+++++ydls+d+l++h                              
   KKY14957.1 387 NVRKVDTHVHHSACMNQKHLLRFIKSKMKKNPDEIVLFRDGMELTLKRVFESINLTAYDLSIDTLDMHahtdsfhrfdkfnlkynpigqsrlreiflk 484
                  89************************************************************************************************ PP

                  .............................................................CCCCCCHHHHHHCCCCCHCTTCCCCCCCCSHHHHHHH CS
  A_deaminase  69 .............................................................wlievvrllavekakdlakdfvkylevifsPlfeata 105
                                                                               wli+v+rl++++ka++++++f+ +++++f+Plfe+t+
   KKY14957.1 485 tdnyikgrylaeitreviadlesskyqmvewrisiygrsmdewsklaawvvdnklfsnnarWLIQVPRLYDMYKANKMMENFESVIKNVFQPLFEVTK 582
                  ************************************************************************************************** PP

                  -GC.STCCHHHHCCCCCCCCCCHCCT-EEEEEECCETTTCCGHCCCHHHHHHCCCCCCCCCCCCC-TTSTTGGGHHHHHCCCCHTT-EEEEEESSSS- CS
  A_deaminase 106 gpq.lpelevvlkvvdgfdsvedeskvkerlilvksrkpeewseeinelasyyrdytvvnldllndekiepaslflklraeagkstllltpHaGEagg 202
                  +p+  p+l+++l++v gfdsv+desk  er++++k+++p+ew  ++n+++sy+ +y ++n+++ln           + r+ +g++t+ll+pH+GEag+
   KKY14957.1 583 DPArDPKLHIFLQRVIGFDSVDDESK-VERRLFRKYPSPKEWNTKQNPPYSYWIYYLFSNMASLN-----------HFRKMRGFNTFLLRPHCGEAGD 668
                  **************************.899999********************************...........********************** PP

                  CHHHHHHHHCS--SCECE-GGGGGSHHHHHHHHHCT-EEEE-HHHHCCCSST-TTTT-CHHHHHHTT-EEEE--BSCCCCT-S...HHHHHHHHHHHH CS
  A_deaminase 203 lehvveAllllkaerigHGvrlrkdpvLqyllalaqiplevcPlSNvalgafleyaenPlkeflerglnvslntDDPlqfgtt...LieeYaiaaqvf 297
                  ++h+++A+l   +++i+HG+ lrk+p Lqy ++l+qi+++++PlSN+al  fl+y++nP+ +++++glnvsl+tDDPlqf +t   LieeY++aaq++
   KKY14957.1 669 TDHLAAAILG--CHSISHGITLRKVPILQYIFYLDQIGIAMSPLSNNAL--FLTYDRNPFVNYFRKGLNVSLSTDDPLQFAFTkepLIEEYSVAAQIY 762
                  *******998..*************************************..*********************************************** PP

                  T--HHHHHHHHHHHHHCSSS-HHHHHHHCH CS
  A_deaminase 298 klseedlaelarNsvkqsflsadekkklld 327
                  k+s+ d++ela+ sv qs+++ + k+++l+
   KKY14957.1 763 KFSSIDMCELAKHSVDQSGFELQLKQRWLG 792
                  *****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (971 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.50
# Mc/sec: 5833.60
//
Query:       KKY14958.1  [L=409]
Description: hypothetical protein UCRPC4_g06545 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2635.27
//
Query:       KKY14959.1  [L=489]
Description: putative c2h2 finger domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.17   12.6   3.2       0.95   10.1   0.9    2.9  2  zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
        1.2   10.2  11.6          7    7.8   1.1    4.0  3  zf-C2H2_4     C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.15   1.3e+03      79     107 ..     283     310 ..     259     313 .. 0.58
   2 ?   10.1   0.9   0.00011      0.95       4      48 ..     314     358 ..     311     458 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.15
  zf-C2H2_3rep  79 qklelsksasvennsenesgvrkfvcrfc 107
                    k+++++   ++ +  + +  r+f+c f 
    KKY14959.1 283 PKQRQTR-FDIQGQGAQGAERRRFICSFS 310
                   2222222.234455566667899***995 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00011
  zf-C2H2_3rep   4 cldsftnkkvlethvqerhhvqfveqclllqcipcgshfgnaeel 48 
                   c  +f+nk+  + hv  +h      +c +  c+p  sh ++  + 
    KKY14959.1 314 CASAFVNKNEWKRHVLSQHLQLGFYRCDIGDCVPTSSHVTSRRNS 358
                   8899***************999999*************9877655 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   1.1   0.00078         7       1      24 []     305     332 ..     305     332 .. 0.89
   2 ?    2.6   0.3     0.036   3.2e+02      10      24 .]     369     383 ..     367     383 .. 0.83
   3 ?    4.9   0.2    0.0064        57       2      24 .]     429     454 ..     428     454 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00078
   zf-C2H2_4   1 fkCpi....CgksFsskkaLlrHlkthH 24 
                 f+C++    C   F +k++++rH++++H
  KKY14959.1 305 FICSFshygCASAFVNKNEWKRHVLSQH 332
                 677777788999*************999 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.036
   zf-C2H2_4  10 FsskkaLlrHlkthH 24 
                 F++k+ + +Hl+++H
  KKY14959.1 369 FNRKDLFTQHLRRMH 383
                 877777899****99 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0064
   zf-C2H2_4   2 kCpiCgksFsskka...LlrHlkthH 24 
                  C +C++ F  k +      H+ +hH
  KKY14959.1 429 VCGFCNQIFEGKGSwedRMEHVGRHH 454
                 5********99999555455666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 3134.76
//
Query:       KKY14960.1  [L=358]
Description: putative rrna processing [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-19   68.8   0.1    1.6e-17   63.7   0.1    2.7  1  Fcf1            Fcf1
  ------ inclusion threshold ------
      0.023   15.0   7.8      0.036   14.3   7.8    1.3  1  Na_trans_assoc  Sodium ion transport-associated
       0.14   11.7  28.1       0.36   10.4  28.1    1.7  1  SR-25           Nuclear RNA-splicing-associated protein
       0.32    8.1   7.2       0.37    7.9   7.2    1.1  1  GREB1           Gene regulated by oestrogen in breast cancer
        1.6    7.2  13.9          2    6.9  13.9    1.1  1  Macoilin        Macoilin family
        5.2    5.7  14.2        7.7    5.2  14.2    1.3  1  Presenilin      Presenilin


Domain annotation for each model (and alignments):
>> Fcf1  Fcf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.1   5.2e-21   1.6e-17       1      99 []      51     208 ..      51     208 .. 0.87

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 5.2e-21
                 HHCTS-EEEEEEHHHHHHHHHCT.................-HHHHHHHT..TSEEE----.SS--.-HHHHHHHHH-B................T.B-T CS
        Fcf1   1 ktLqakvkpliTqCviaeleklg..kk.............lkealkiak..tferlkCnh.kkpt.saddClvsvvkk................k.knk 63 
                 +tL++kvkp+iT+C++++ ++ +  ++              +  + i    ++  ++C+h ++++ s+++Cl+++v+                 + knk
  KKY14960.1  51 RTLHGKVKPFITKCCLEAANARSlqSNktspspslpkynpHRRPTYIPSplELPLRHCDHgDRGIlSETECLLDLVSGgasstilnstpkgqgkQpKNK 149
                 69**************998887754225677888888887455555555335999*****966666***********9999********99886258** PP

                 T-EEEE-.......................S-HHHHHHHHTSTT--EEEEE--EEEE-- CS
        Fcf1  64 kryivAt.......................qDkdlrrrlrkipgvPilyikrsvmvlEk 99 
                 ++yi+At                       +++d+r  +r++pgvPi+y+krsvm+lE+
  KKY14960.1 150 EHYIIATgdaeagekiapisnagqkrkrhlEERDMRALIREVPGVPIIYVKRSVMILEE 208
                 *********************************************************95 PP

>> Na_trans_assoc  Sodium ion transport-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   7.8   1.2e-05     0.036      50     166 ..     144     317 ..     119     335 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
  Na_trans_assoc  50 kalkakkenqianqtsaet.eelekakeekseededdeldfiknpnltvs...VpIA.....................................e 103
                     k+ k+k    ia+   ae  e++     ++  ++++ +l+  + + l  +   VpI                                      +
      KKY14960.1 144 KQPKNKEHYIIATGD-AEAgEKIAPI--SNAGQKRKRHLEERDMRALIREvpgVPIIyvkrsvmileelsaaslgvrrkeekekmteglllgkrK 235
                     333433333333331.1211222211..1111223333332222222222112333366666666677777777788888888888888888886 PP

  Na_trans_assoc 104 gesdle.neededessess..............eeekkk...e.eeqlekdessssegstvDlkdpeeeleeieeeaeesee 166
                     ++++l+ ++++++++s ss              ++ kkk   + +++++ +++s s  st++ ++ +e+ +e e e+ee+++
      KKY14960.1 236 RDEELDsDDNEDETQSHSSksrglrkakgpnplSVKKKKkgnNsSSSSSVKSKSHSSKSTLNNHNAKENQQERERENEEDKQ 317
                     7777775566777777777899999999999994444333443355568999999999********9999999999999876 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  28.1   0.00012      0.36      18     117 ..     233     331 ..     214     351 .. 0.41

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
       SR-25  18 kkrkksskdssrsssasksqsrkassasekee.erskekkkkkrrrssssssssssssssssssssssssddrkkrgkkkdkkkkkkkkkkkkkkekkk 115
                 k+++    ds  +   ++s+s k +   +++  +  + kkkkk ++ssssss  s s ss s+   ++++  ++++++++++ + k++k k+++k+kk 
  KKY14960.1 233 KRKRDEELDSDDNEDETQSHSSKSRGLRKAKGpNPLSVKKKKKGNNSSSSSSVKSKSHSSKSTLNNHNAK--ENQQERERENEEDKQSKPKRRRKHKKS 329
                 3333334444444444444444444344333312223333333332333332223333332333333333..333333333333333333444444444 PP

       SR-25 116 ak 117
                 + 
  KKY14960.1 330 ST 331
                 33 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   7.2   0.00012      0.37    1060    1192 ..     197     331 ..     152     353 .. 0.46

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00012
       GREB1 1060 syltrtal.eqelglaaylvskevvreksvgsdllesdaeklsstdnedeelqedgerpksnssavqstsdsvaadaaeessktspvkve..ksesk 1153
                   y++r+ +   el+ a+  v+++  +ek++   ll +  +++ + d +d+e  ++++++ks++    + ++ ++ +++++ ++ s       ks+s+
  KKY14960.1  197 IYVKRSVMiLEELSAASLGVRRKEEKEKMTEGLLLGKR-KRDEELDSDDNEDETQSHSSKSRGLRKAKGPNPLSVKKKKKGNNSSSSSSVksKSHSS 292 
                  46677654146888888888888877776655555443.3444444444444334444334444433444433333322222222222220022222 PP

       GREB1 1154 davesglsskasakselseasaaaasaseeakspkasvt 1192
                  +++ ++ ++k+++++  +e+++ ++s+ +++++ k+s+t
  KKY14960.1  293 KSTLNNHNAKENQQERERENEEDKQSKPKRRRKHKKSST 331 
                  222222222222222222222222222222222222222 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  13.9   0.00067         2     270     374 ..     233     335 ..     165     353 .. 0.48

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00067
    Macoilin 270 kkkhehnesvdsklqekeymenkskskrlsksessgsesellveesvkskssssssssnknskkasagsagssnssskkhsessksvtsssssknskkq 368
                 k+k+   e++ds+ +e e ++  sks+ l k + ++  s  ++++ ++s+ssss +s++++sk++ ++  +  n   ++ +++++++++ + ++++kk 
  KKY14960.1 233 KRKR--DEELDSDDNEDETQSHSSKSRGLRKAKGPNPLSVKKKKKGNNSSSSSSVKSKSHSSKSTLNNHNAKENQQERERENEEDKQSKPKRRRKHKKS 329
                 2222..234444444444333334444444443333333222222222222222222223333333333333333333333333333333344444444 PP

    Macoilin 369 klpaGk 374
                 +++ G 
  KKY14960.1 330 STGNGT 335
                 444333 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  14.2    0.0026       7.7     233     304 ..     249     319 ..     196     346 .. 0.36

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0026
  Presenilin 233 aeseeeeeaekkkeeasesskeeeseeesseksaqsse............................seeeseeesseaessaeesseekeseessesse 303
                 ++s++++++                                                         s+++s++++ ++++++e +++e+e+e+++++++
  KKY14960.1 249 TQSHSSKSR----------------------------GlrkakgpnplsvkkkkkgnnssssssvkSKSHSSKSTLNNHNAKE-NQQERERENEEDKQS 318
                 111111111............................0111122333222222111111111111111111111111111111.111111111111111 PP

  Presenilin 304 e 304
                 +
  KKY14960.1 319 K 319
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2095  (0.11685); expected 358.6 (0.02)
Passed bias filter:                      655  (0.036533); expected 358.6 (0.02)
Passed Vit filter:                       150  (0.00836633); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.49
# Mc/sec: 2219.45
//
Query:       KKY14961.1  [L=521]
Description: putative rrna-processing protein utp23 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-05   24.5   0.2      0.002   17.8   0.0    2.4  2  PP2C      Protein phosphatase 2C
    6.9e-05   22.9   0.0    0.00016   21.6   0.0    1.6  1  SpoIIE    Stage II sporulation protein E (SpoIIE)


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.2e-07     0.002      41     133 ..     236     338 ..     204     346 .. 0.78
   2 !    4.3   0.1    0.0029        26     205     236 ..     378     409 ..     355     429 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.2e-07
                 EEESSSHHHHHHHHHHH...HHHHHHHHCHTTH.HHHHHHHHHHHHHHHHHHHHHHHHCHCCT-EEEEEEEEEETTE............EEEEEESS-E CS
        PP2C  41 dghggseaakyarehle...eilksqksfeele.kleqalrksfladtdeelksskantepsksGstavvalirgtk............lyvAnvGDSr 123
                 dgh   e a+ ++++ +   +++++ ++ + ++ ++ + l+ +f + t+e +k+  a    + +G+t  v+ + +++            lyv+n+GDS 
  KKY14961.1 236 DGHLDLEEATPDNTSRKtdsTLAANMSKLTLSNpDPVAFLQRAFEK-TQEATKQ--A---NDIVGTTTFVSALLHHQfpkestqnleplLYVTNLGDST 328
                 5555555555554444433355566666666668999999999999.8888888..4...599******999999999********************* PP

                 EEEEETTEEE CS
        PP2C 124 avLcrkgnak 133
                 + ++r ++++
  KKY14961.1 329 VFVIRPRHTE 338
                 *999877765 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0029
                 EEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHT CS
        PP2C 205 defliLacdGlwdvlsdqeavdlvrdelekkk 236
                  + ++ ++dG+ d l + e++++v d l  ++
  KKY14961.1 378 GDLVVAVSDGVVDNLWEHEVCEIVCDSLRNWT 409
                 5678889*******************999987 PP

>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.8e-08   0.00016      28     138 ..     259     392 ..     252     416 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.8e-08
                 HHHHHHHHTTTSHHHHHHHHHHHCHCTTSTT.......TTCEEEEEE......EETTTTEEEEEEESSSSEEEEETTSTEEEEE--SS--.......TT CS
      SpoIIE  28 salrelataglepaevlkrlnralardleee......erfaTavlav......ydpstgkleyanaGhpppllvrpdggtklllastglp.......lG 107
                   + +l+ ++ +p  +l+r+ ++ ++ ++++        f++a+l +       +  +  l++ n+G++ ++++rp ++++++  +++         lG
  KKY14961.1 259 ANMSKLTLSNPDPVAFLQRAFEKTQEATKQAndivgtTTFVSALLHHqfpkesTQNLEPLLYVTNLGDSTVFVIRPRHTEVMYRSKEQWHwfdcprqLG 357
                 55778888899999*********988888889999999999999999653333222333488**************99666666655544444449999 PP

                 TSSS....T-EEEEEEE--TTEEEEEESCCCCSSS CS
      SpoIIE 108 ilpe....adyetaelelepgdtlllyTDGvtEar 138
                   +      ++   +l++ +gd+++ ++DGv+++ 
  KKY14961.1 358 TNSPdvpnVNAVMDKLDISEGDLVVAVSDGVVDNL 392
                 9766898899999*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 3261.52
//
Query:       KKY14962.1  [L=327]
Description: putative short-chain dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-27   94.8   0.1    1.2e-24   86.8   0.1    2.1  1  adh_short     short chain dehydrogenase
      1e-18   67.8   0.0    2.3e-11   43.7   0.0    2.1  2  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
      2e-07   31.1   0.1    3.4e-07   30.4   0.1    1.3  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.1   2.1e-28   1.2e-24       1     188 [.      26     240 ..      26     245 .. 0.85

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 2.1e-28
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT....TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGG CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee....gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfse 95 
                 kvv++tGa+sG+G+++ak ++++Ga++++++r+ ekl+ v + +k+e    g ++  +++D++d e+++a   +  +k  +l+vLv+NAG+  + p+ +
  KKY14962.1  26 KVVIITGATSGVGYELAKMVYSSGATTYITGREGEKLRMVGDRIKKEvgetGGRLRLLKLDLADLESIKASAGEFLEKERELHVLVHNAGV-MVPPAGS 123
                 89***********************************98766666666555999*************************************.7888888 PP

                 CSHHHHHHHHHHHTHHHHHHHHHHHHHHH.......HCTTEEEEEEEEGGGT.................SB-TTBHHHHHHHHHHHHHHHHHHHHHGGG CS
   adh_short  96 lseeewervievNltgvflltravlpaml.......kqssGrIvnvsSvagk.................vpvagvaaYsAsKaavagltrslakelapt 170
                  +    +  i +N  g+fl t+++l++m+       + s+ rIv v+S+ ++                 v    +  Y  sKa+v+ l++++ak + ++
  KKY14962.1 124 RTPMGHDLEIGTNCLGPFLFTQLLLETMKksvslesELSKVRIVWVASMMALgtpeggvifdksaghpkVLKDKMENYMQSKAGVTFLASEAAKRYGQD 222
                 899999***********************999999878889999999987641111111111111101023345779********************** PP

                 TEEEEEEEESSBSSHHHH CS
   adh_short 171 girvnavaPGlvdTdmak 188
                 gi  ++v+PGl++T++++
  KKY14962.1 223 GIISVSVHPGLMKTELQR 240
                 ***************986 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   3.8e-15   2.3e-11       1     121 [.      32     155 ..      32     159 .. 0.92
   2 !   22.1   0.0   1.5e-08     9e-05     116     188 ..     172     248 ..     154     259 .. 0.80

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 3.8e-15
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE...E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH- CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae...v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpflets 91 
                   Ga sg+G+++Ak + + Ga+  +t ++ e+ +   +++++e+g++   +  l++D +d e+++a + e  ek  +l++lv+nag++ +   p+ + +
    KKY14962.1  32 GATSGVGYELAKMVYSSGATTYITGREGEKlRMVGDRIKKEVGETggrLrlLKLDLADLESIKASAGEFLEKERELHVLVHNAGVMVP---PAGSRT 125
                   999************************999888888899998866544367*************************************...899999 PP

                   HHHHHHHHHHHTHHHHHHHHHHHHHCTSCC CS
  adh_short_C2  92 reefdraldvnlyslfllakaalplmkegg 121
                     + d  + +n+ + fl+++ +l+ mk++ 
    KKY14962.1 126 PMGHDLEIGTNCLGPFLFTQLLLETMKKSV 155
                   **************************9875 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 1.5e-08
                   HCTSC...CEEEEEEEGGGTSBSTTTT.HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHH CS
  adh_short_C2 116 lmkeg...gsivnlssvgaervvpnyn.aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdel 188
                   +m+ g   g ++   s g  +v+++    y+ +Ka++  l+  +A+ +g++gi   +v+pg++kT+++++ ++ +++
    KKY14962.1 172 MMALGtpeGGVIFDKSAGHPKVLKDKMeNYMQSKAGVTFLASEAAKRYGQDGIISVSVHPGLMKTELQRHGPKIQSI 248
                   4544444588888888888888666655**************************************99887766655 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.1   5.6e-11   3.4e-07       3      92 ..      28     117 ..      26     123 .. 0.91

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 5.6e-11
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHH.HHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE----- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskalia.elealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvl 92 
                 ++itG++ g+G ela++ +++ga++  +++R++++ +   ++i+ e+ ++g + +++++D++d ++++a   e+ ++e++++  +h Agv+
  KKY14962.1  28 VIITGATSGVGYELAKMVYSSGATT-YITGREGEKLRMVGDRIKkEVGETGGRLRLLKLDLADLESIKASAGEFLEKERELHVLVHNAGVM 117
                 79********************987.679***988888887775278889***************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.53
# Mc/sec: 1864.80
//
Query:       KKY14963.1  [L=573]
Description: putative major facilitator superfamily protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-38  131.5  52.4    3.8e-37  128.0  52.4    2.2  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.0  52.4   2.1e-41   3.8e-37       1     351 [.      78     479 ..      78     481 .. 0.81

  Alignments for each domain:
  == domain 1  score: 128.0 bits;  conditional E-value: 2.1e-41
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 l+la+f++al+ +i+++a+p  ++++++ +   +g+ ++ y l++++++l++G +   f  ++v+l++l++f +g+l++ +a+++++l+v+r+++Glg+
  KKY14963.1  78 LMLAVFCVALDNTIISVAIP-RITDQFH-DLNDVGWYASSYLLTTCAFQLLFGKFYALFNIKWVFLIALFIFEVGSLVCGVAPNSTALIVGRAVAGLGS 174
                 689*****************.*******.**********************************************77777569989************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 +++f+++++ +a  +p e+r+  +gl++++++++++ gpllgg++++++ Wr++fyi+ +++ + +   l+ll  +p++++ k+p              
  KKY14963.1 175 AGIFTGALVTLANTTPLEKRPVFLGLIGGMYGIASVAGPLLGGAFTDHATWRWCFYINLPLGGVTAAGLLFLLKLSPKAKRVKEPLFTAfkrldpigtv 273
                 *****************************************************************7733466666666666666666669999999999 PP

       MFS_1 189 .................................kgtgpaplvp.......awkallkdpvl....w.....illialllf..ffgfsglltllplylqe 236
                                                                   ++++llkd+            i++++l++   ++ f++  +++p+++q 
  KKY14963.1 274 ifvpaiiclllalqwggikydwsdgriivlfilF--------GvfilvfiGIQILLKDNATvptrIasqrtIAFASLFGLciGASFFIQIYYIPIWFQA 364
                 9999999999999988888766665555555553........0555555557777777755443314454545555555511335555999******** PP

       MFS_1 237 vlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt...ssavllllvlvliGfglgfvfpsllalasdlappe 332
                  +g s ++ ag+ +  + l+++++ +++g+l +++g  ++++ a+++++ + +gl+ + +    +s+++++ +++ +G glgf ++ ++a+a+  +  e
  KKY14963.1 365 IRGTS-AIRAGINSLPMILANVFAIIISGALTTKIGYYTQWFYACVVIMSVGAGLITTFTVdvsQSKWIGYQFIYGLGAGLGFQQGGVAAQAVLPI--E 460
                 *****.79999888888888888899*******************999999999999999975444444444555566666666777777766666..6 PP

       MFS_1 333 eagtasglfntagslggal 351
                 +    ++ + +++ lggal
  KKY14963.1 461 QVPIGTATVLFLQVLGGAL 479
                 6666666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 3637.45
//
Query:       KKY14964.1  [L=599]
Description: putative mfs drug efflux pump [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-21   74.6  70.3    7.7e-18   64.5  44.3    2.9  2  MFS_1            Major Facilitator Superfamily
    1.5e-14   53.3  27.1    1.5e-13   50.1  27.1    2.0  1  TRI12            Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
       0.14   11.6   0.0       0.22   10.9   0.0    1.2  1  Vac7             Vacuolar segregation subunit 7
       0.16   12.0   0.2       0.16   12.0   0.2    3.6  4  Phage_holin_3_7  Putative 3TM holin, Phage_holin_3
       0.27   10.9   1.1        0.5   10.0   1.1    1.4  1  SpoIISA_toxin    Toxin SpoIISA, type II toxin-antitoxin syste
          5    7.7   9.2        1.5    9.4   5.0    2.5  2  Glug             The GLUG motif
          8    6.5   9.8        1.8    8.6   1.0    3.5  3  DUF4017          Protein of unknown function (DUF4017)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5  44.3     3e-21   7.7e-18       3     352 ..      58     479 ..      50     480 .. 0.80
   2 !   24.4  18.0   4.9e-09   1.3e-05       5     152 ..     339     495 ..     335     575 .. 0.74

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 3e-21
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslwlllvlrvlqGlga 99 
                 +a++   +  +++g+++  ++ +dlg + +  g+++ +  l ++v+s+++Grlsd + r+ +  +  l+ + g ++ + a  +s+ +l+ + +l G++ 
  KKY14964.1  58 FAIMAQVFVVTAAGSVIA-FIVRDLG-DSAISGWIIQGPLLIQSVLSPIVGRLSDVLDRKYLSSIPPLIAFMG-AIVS-AkaQSMAVLIGGGILIGVTL 152
                 333444444444666666.99*****.99999*************************8888888888888888.5555.3326666************8 PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllgglla..sslgWravfyilaivsllafv.lfllllpeepperkrkspkeee....... 188
                  + +++++a+ +++ p + r++a+g++++g ++G ++g l +g ++   + gWr +f++ a++     + lfll+ p+++++ +   + +++       
  KKY14964.1 153 -STISIVQAIPSEVLPLKYRALANGFAYLGGAVGGLVGSLGAGGVTnqNASGWRNIFWMQAAFHGATSLgLFLLYHPRRKSDYP---HMTLRqyiwacd 247
                 .899999*******************************66666555555556**************988443333333333333...33333667**** PP

       MFS_1 189 ....................................................................kgtgpaplvp...awkallkdpvlw.illia 215
                                                                                       +g++   +   a   +  +p +  ++++ 
  KKY14964.1 248 pigstlfivsattlllalnwaageyawssahvvaplivglvflitfciygkklseydkasldgcvwieW-KGRS---DglvAHAFFSGSPNFAlSVFAF 342
                 **************************************************9999999966666655431.2222...1222355555555554467777 PP

       MFS_1 216 lllfffgfsglltllplylqevlgls......glllaglllallalvgailallagrlsdrlgr.rrrlllallllllaalglallavtssavllllvl 307
                 ++ +++++s++ + +p + + +lg+       +  +++  + ++alv+   ++ ++ ++++++  + +ll+++ ++l+++++++++ ++  +++ + + 
  KKY14964.1 343 AIEGWLFYSAVNSVTPQI-VLHLGFEenswkiSIRQLS--YTIVALVA---SIPITVYATKYKDlKSPLLVTFTVFLAVTICYCVITPS-MNHAQIGFN 434
                 777788899999999997.9999999*76655445555..55555555...99999999997777999999999999999999999999.********* PP

       MFS_1 308 vliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 vl G+g++   +++ al++  ap     ta+gl  +a+++gga+g
  KKY14964.1 435 VLSGLGQSGPLTLIVALIQFTAPHAFLSTATGLGFSARAIGGAFG 479
                 *******************************************98 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 4.9e-09
       MFS_1   5 aflsalarsilgpalpl.alaedlgispseigllltl....yalgaavaslplGrlsdrfGrrr.vlllglllfalg.lllllfasslw.lllvlrvlq 95 
                 +f  a+  +++++a+ + + +  l++   e ++ +++    y+++a+vas+p+ + ++++   +  ll+++++f++  ++++++++s+  + + + vl+
  KKY14964.1 339 VFAFAIEGWLFYSAVNSvTPQIVLHLGFEENSWKISIrqlsYTIVALVASIPITVYATKYKDLKsPLLVTFTVFLAVtICYCVITPSMNhAQIGFNVLS 437
                 44444444554444444444444666699999999998888999****************7555577777777666635555555999999******** PP

       MFS_1  96 GlgagalfpagaaliadwfpkeergraigllsagfslGailg.pllggllasslgWra 152
                 Glg+++ +++++ali   +p+   + a+gl  ++ ++G ++g ++l +++  +lg  +
  KKY14964.1 438 GLGQSGPLTLIVALIQFTAPHAFLSTATGLGFSARAIGGAFGsAVLDAIINGNLGSKY 495
                 ******************************************7777777778888444 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1  27.1   5.7e-17   1.5e-13      51     566 ..      58     588 ..      37     597 .. 0.76

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 5.7e-17
       TRI12  51 lnvvatyfvlqasasalpnilqdvgqsensslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpag 149
                 + ++a  fv+ a+ s +  i++d+g+s  s+ +     + q+v   ++grl+d + r+ +  +  ++ ++gaiv + a+ +  l+    l+gv+     
  KKY14964.1  58 FAIMAQVFVVTAAGSVIAFIVRDLGDSAISGWIIQGPLLIQSVLSPIVGRLSDVLDRKYLSSIPPLIAFMGAIVSAKAQSMAVLIGGGILIGVTLSTIS 156
                 467999**************************99999999****9************************************************999999 PP

       TRI12 150 asplfvgelmsnktkflgllivsipvvvtsglspylgq...rlaiqgswrwifyiyiitsaiavllivvwyyppsfaqlhgkkvrkreelakldwigii 245
                     +  e++  k + l      +   v  gl   lg           wr if++       + l + + y+p   +     +++ r+ +   d ig  
  KKY14964.1 157 IVQAIPSEVLPLKYRALANGFAYLGGAV-GGLVGSLGAggvTNQNASGWRNIFWMQAAFHGATSLGLFLLYHPRRKS--DYPHMTLRQYIWACDPIGST 252
                 8888889998888887754444333322.2233333331002333457********999999999999999*98655..4567888999********** PP

       TRI12 246 lvivgvslfllgvswggkpnspwnsakviglissglgslvvfalyev.ygkpvrpivppalfkdtrg................fvcillissimgamnl 327
                 l iv ++ +ll + w    +  w sa+v+  +  gl  l+ f++y        +  +  +++ + +g                f   ++  +i g +  
  KKY14964.1 253 LFIVSATTLLLALNWAA-GEYAWSSAHVVAPLIVGLVFLITFCIYGKkLSEYDKASLDGCVWIEWKGrsdglvahaffsgspnFALSVFAFAIEGWLFY 350
                 ***************86.5679*********************99532444445555555555555500000000000000004444444445554444 PP

       TRI12 328 slviiypqqvvnifgsslknweetawmsatasfgtgagvvvlgslfhlv.....rhirwqilvgalwltaflgamssvnrdnknaaialsvlsgfvvaw 421
                 s v     q+v  +g     +ee +w  +   +  ++ v ++ s+   v     + ++  +lv    + a+  +   +    + a i + vlsg+  + 
  KKY14964.1 351 SAVNSVTPQIVLHLG-----FEENSWKISIRQLS-YTIVALVASIPITVyatkyKDLKSPLLVTFTVFLAVTICYCVITPSMNHAQIGFNVLSGLGQSG 443
                 444333333333334.....56666665544332.223333444444440000144555566655555555556677888888999*********9999 PP

       TRI12 422 aqditmllvqfittdedlgvafavvaaarpfagsiftaafislysnrypkelashlssalrgtdipqasfsslleaaksgrieavkalpgmtteiaavv 520
                    + + l+qf +    l  a  +  +ar + g+  +a + ++ + +   + a+ +  a   +++p +s+ +llea  +g   +   +pgm + i a v
  KKY14964.1 444 PLTLIVALIQFTAPHAFLSTATGLGFSARAIGGAFGSAVLDAIINGNLGSKYANRIGNAAVKAGLPSSSVVALLEALAAGESLSAAGIPGMNATIEAKV 542
                 9999999**************99999999998888888888888889999999999999999*******************99999************* PP

       TRI12 521 sramadsytasyanvyyfamalgvipiiaslcmrdldryltdhvph 566
                 ++a   +y+ +y   +   + + v+ +ia  c++ +   +t++v  
  KKY14964.1 543 THASEWAYAKAYRLAWASIIPFIVLALIAVACLKGVKELMTEKVEA 588
                 *************9999999*********************99865 PP

>> Vac7  Vacuolar segregation subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.5e-05      0.22     253     322 ..       8      77 ..       2      87 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.5e-05
        Vac7 253 addErtPLvgsvRsarsrr.srrrpnsaslrqleelqqrrrsllsrfaaClvltvllllvvsgaigflfat 322
                  +dEr+ L  s+R+a + + +  + + + l+++e++q   rs++  f +C+ ++  +++ v++a + +  +
  KKY14964.1   8 PSDERIELSISARHANALNfEPPEAHVHELNAAEHVQLSWRSWIVVFISCFAIMAQVFV-VTAAGSVIAFI 77 
                 38******99***999988666777789999*******************876554444.44444443333 PP

>> Phage_holin_3_7  Putative 3TM holin, Phage_holin_3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.8      0.84   2.2e+03      27      36 ..      58      67 ..      38      91 .. 0.56
   2 ?   -2.8   0.7       2.5   6.5e+03      41      61 ..     263     280 ..     253     296 .. 0.48
   3 ?   12.0   0.2   6.3e-05      0.16      22      68 ..     370     421 ..     366     431 .. 0.75
   4 ?   -1.9   0.2       1.3   3.4e+03      45      66 ..     548     569 ..     537     581 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.84
  Phage_holin_3_7 27 iswlAylliv 36
                      +++A + +v
       KKY14964.1 58 FAIMAQVFVV 67
                     2333333333 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.5
  Phage_holin_3_7  41 vairillglyrevdlaevlin 61 
                      +a++++ g+y++   +++ + 
       KKY14964.1 263 LALNWAAGEYAW---SSAHVV 280
                      355666666664...222222 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 6.3e-05
  Phage_holin_3_7  22 rhrrgiswlAyllivasgsvairillglyre.....vdlaevlinvvLlvlv 68 
                       +++ i  l y ++++ +s++i +   +y+         + v+++v+++ +v
       KKY14964.1 370 SWKISIRQLSYTIVALVASIPITVYATKYKDlksplLVTFTVFLAVTICYCV 421
                      5666777899********************9744444445555566666665 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.3
  Phage_holin_3_7  45 illglyrevdlaevlinvvLlv 66 
                      ++++++++ ++a+++  +vL++
       KKY14964.1 548 WAYAKAYRLAWASIIPFIVLAL 569
                      5555555566666655555543 PP

>> SpoIISA_toxin  Toxin SpoIISA, type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.1    0.0002       0.5      24      85 ..     366     427 ..     347     434 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0002
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXX CS
  SpoIISA_toxin  24 neekykekltaIRktwYllFvvglavyllveeisltnwk..lililaviiifiDlavlltpsik 85 
                    +ee+ +  ++ IR+++Y++  + + + ++v+++++++ k  l+++++v+++++    + tps++
     KKY14964.1 366 FEENSW--KISIRQLSYTIVALVASIPITVYATKYKDLKspLLVTFTVFLAVTICYCVITPSMN 427
                    555544..479**************************982246788899998888888888886 PP

>> Glug  The GLUG motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.0   0.00058       1.5       2      25 ..     181     203 ..     181     207 .. 0.86
   2 ?   -3.5   0.1         7   1.8e+04       5      17 ..     474     481 ..     471     488 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00058
        Glug   2 atavGGLvGgaggggsienctatg 25 
                 ++avGGLvG +g+ g ++n +a+g
  KKY14964.1 181 GGAVGGLVGSLGA-GGVTNQNASG 203
                 579*******998.8****99998 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 7
        Glug   5 vGGLvGgaggggs 17 
                 +    Gga+g ++
  KKY14964.1 474 I----GGAFG-SA 481
                 4....44554.33 PP

>> DUF4017  Protein of unknown function (DUF4017)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2      0.56   1.4e+03      45      58 ..     285     298 ..     278     300 .. 0.63
   2 ?    1.6   0.2       0.1   2.6e+02      26      57 ..     365     397 ..     348     400 .. 0.78
   3 ?    8.6   1.0   0.00069       1.8       5      53 ..     406     454 ..     398     458 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.56
     DUF4017  45 llitalisfyinkk 58 
                 + +++li+f i  k
  KKY14964.1 285 VGLVFLITFCIYGK 298
                 33677888877655 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.1
     DUF4017  26 GYntvgWkLfvGqi.YalPillitalisfyink 57 
                 G+   +Wk+ + q+ Y +  l+  + i+ y  k
  KKY14964.1 365 GFEENSWKISIRQLsYTIVALVASIPITVYATK 397
                 777778999999975777777666778888776 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00069
     DUF4017   5 vpaLlvYlivciiavilPaseGYntvgWkLfvGqiYalPillitalisf 53 
                 ++++ v+l v i   ++  s  + ++g+ ++ G   + P+ li+ali f
  KKY14964.1 406 LVTFTVFLAVTICYCVITPSMNHAQIGFNVLSGLGQSGPLTLIVALIQF 454
                 45566889999998888889999************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 3936.55
//
Query:       KKY14965.1  [L=646]
Description: putative rna polymerase i specific transcription initiation factor rrn3 superfamily [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.5e-157  524.3   0.0   4.4e-157  524.0   0.0    1.1  1  RRN3      RNA polymerase I specific transcription initiation 


Domain annotation for each model (and alignments):
>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  524.0   0.0  2.4e-161  4.4e-157       7     556 ..      39     609 ..      34     611 .. 0.90

  Alignments for each domain:
  == domain 1  score: 524.0 bits;  conditional E-value: 2.4e-161
        RRN3   7 mlkefVrnALeekekgdseqydeLleqfsekkeeseapslaelkqllkalssvvsrLershssLveailslkWlerdeafvkayieFlgeLvsaqpkyl 105
                 +++e+Vr+A++++ +gd+++yd+++ +f+++++ ++a  ++ +k++l+a+ ++v+ L++++++Lv+a+  ++W++rd +fv++y++Flg+L++aq++yl
  KKY14965.1  39 VVREEVRRAIQQHLNGDNDAYDRIKGIFKTDPNADNAAAPNVVKAHLQAILANVALLDKNCNGLVNALCFTEWVGRDAQFVSLYTKFLGNLAAAQSGYL 137
                 789************************************************************************************************ PP

        RRN3 106 sevlsklvqnfteqsessaalpessevtrrevyerlHelLkkllsliPtlasvlqpllakkfPhkreskk..aqvtYirnllklteycpelsedileli 202
                  ++ ++lv+ + + +  s ++p+ + v+   + +r+H+++++ll+liP  ++vl+++la+++ +k +++k  + +  ++n lk+  y+pel++d+l++i
  KKY14965.1 138 GKIFDMLVDVLADVK--SRRIPSFPAVRLPLMQSRAHAAIQYLLQLIPVGSNVLSKILARRLQYKPDPEKleSDIIVTKNALKMLGYAPELKADVLAAI 234
                 ***********8888..899*********************************************9888733667788********************* PP

        RRN3 203 verlikiDVeiqveledlddeedeeleeelee............deddedddedd...eesdlddlssdeeaeedee.kdeeeeslkkikelvekLDai 285
                 + +l+k+DV++qv+ledldd+  ++l ++++             +         d   +e+ ++ +s+d++++ed++  d ++++lk +++++ek+D++
  KKY14965.1 235 TGELVKVDVQVQVDLEDLDDNVGDDLVQDVALqsslkypssqilH---------DgslSEELIECESEDDSDSEDDDdVDPRQMRLKIVRANIEKVDSL 324
                 ************************999998767777666543221.........13332222333333333333333367778899************* PP

        RRN3 286 ltllfehlekkfssestkeeeeeeeglelfntLlslFkstiLptyksrhvqFllFhfssldpeladkflglLidialsknepaetRvaAaaYlaSfvaR 384
                 ++llf+++++ ++      + e +  +++ + Lls+F+++iLpty+srh qFl+Fhf+++dp l d+f++++i++++++++p++ R++AaaYlaSfvaR
  KKY14965.1 325 IDLLFQYYDPLLR-G----SLEVR--ENTIDLLLSHFHNIILPTYRSRHSQFLIFHFAQTDPLLIDRFATSCIQVIFDRRQPPVLRQSAAAYLASFVAR 416
                 **********222.2....34444..4899********************************************************************* PP

        RRN3 385 AkfvskeqvrkvvslLvewlekyvdereeevqgpdlkrhkvFYavaQAllYifCFRwrdLlkeeee.........kekdrkwlqel.kvlqrviiskLn 473
                 +++v+ ++vr+v++lL   l+++++e+e +++gpdl+r++ FY+++QAl+Y+fCFRwr+L+++++e         +e   ++ + + ++l ++i skLn
  KKY14965.1 417 GAHVPPTVVRDVFDLLGGQLDSMRKEYEPSCRGPDLRRYSSFYSMTQALMYMFCFRWRELTSQAAEdedlsdfedDELAVTFPPAVrEPLYQAIFSKLN 515
                 ************************************************************99888678999998877788999**************** PP

        RRN3 474 PLkvcspnVveeFakiaqalqllycysilesnkrerlsgiesks...ta........kkkqeaaeLdsyFPFDPykLprskrfieelYveWsev 556
                 PL+vcsp +v+eFa++a++l+++y+ys le nk+ rls+++  s   ++        +   + + L+ yFPFDPy Lprsk++i+++Y eW+ +
  KKY14965.1 516 PLRVCSPDIVDEFARVAHRLRFIYVYSKLELNKNVRLSSFRAVSaieSSlngpdrdsSGWGQSTILEPYFPFDPYLLPRSKKWIDNDYQEWRGL 609
                 *****************************************887776115555555578889999**************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 4035.13
//
Query:       KKY14966.1  [L=300]
Description: putative iron-sulfur protein subunit of succinate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-32  112.4   0.0    1.6e-32  111.7   0.0    1.3  1  Fer2_3    2Fe-2S iron-sulfur cluster binding domain
    2.3e-08   34.5   6.0    2.3e-08   34.5   6.0    2.2  2  Fer4_17   4Fe-4S dicluster domain
    6.6e-07   29.7   7.3    6.6e-07   29.7   7.3    2.4  2  Fer4_8    4Fe-4S dicluster domain
    1.2e-06   28.5   2.4    1.2e-06   28.5   2.4    2.1  2  Fer4_10   4Fe-4S dicluster domain
     0.0017   18.9   3.7     0.0017   18.9   3.7    2.4  2  Fer4_7    4Fe-4S dicluster domain
     0.0071   16.3   3.1     0.0078   16.1   0.4    2.2  2  Fer2      2Fe-2S iron-sulfur cluster binding domain
  ------ inclusion threshold ------
        2.8    8.2  12.0         26    5.1   4.9    2.9  4  Fer4_9    4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> Fer2_3  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   0.0   6.2e-36   1.6e-32       1     107 [.      68     173 ..      68     175 .. 0.95

  Alignments for each domain:
  == domain 1  score: 111.7 bits;  conditional E-value: 6.2e-36
      Fer2_3   1 tlkvkRfdprrdrgkqkvqeyeveae.eedtvldaLlkikeevdptlafrasCregiCGscavainGkptlaCtatikdlakqkseieleplpkfpvir 98 
                 +++++R++p+++++k+++q+ye++ +  + ++ldaL +ik+e+dptl+fr+sCregiCGsca++i+G +tlaC  +i + ++++   ++ plp+  v++
  KKY14966.1  68 KFQIYRWNPDKPSQKPWMQTYEIDLNkTGPMMLDALIRIKNEIDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTETSKE--SRIYPLPHTYVVK 164
                 589*********************998999************************************************988775..8************ PP

      Fer2_3  99 DLvvDidem 107
                 DLv D + +
  KKY14966.1 165 DLVPDLTYF 173
                 *****9876 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.7       1.2   3.1e+03      37      37 ..     109     109 ..      66     133 .. 0.49
   2 !   34.5   6.0     9e-12   2.3e-08       1      61 []     211     284 ..     211     284 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.2
     Fer4_17  37 a 37 
                 +
  KKY14966.1 109 E 109
                 0 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 9e-12
     Fer4_17   1 rCiqCgyClpeCpsyeaydne...pkkllraakl.......glleeaeke........ekaslCieCgeCerkCPqgld 61 
                 +Ci C++C  +Cpsy+++++e   p+ ll+ +++       +     ++e        +   +C+++ +C+r CP+gl+
  KKY14966.1 211 ECILCACCSTSCPSYWWNSEEylgPAILLQSYRWladsreeH-----KAErklalensMSLYRCHTILNCSRTCPKGLN 284
                 6****************9997666888888888887544331.....22233555554799***************996 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3  10.6   0.00029      0.75      34      63 ..     188     224 ..     119     229 .. 0.59
   2 !   29.7   7.3   2.6e-10   6.6e-07       2      64 ..     209     282 ..     208     283 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00029
      Fer4_8  34 e.......dvqeeqvleeeealwsCttcgaCtevCpv 63 
                         + q+ + +++ ++l++C  c +C++ Cp 
  KKY14966.1 188 TpspdgkeYRQSPEDRKKLDGLYECILCACCSTSCPS 224
                 133333334555555555789**************95 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 2.6e-10
      Fer4_8   2 lekCieCgaCqsaCp.............vlrrtkkhlldargeaaedvqeeqvleeeealwsCttcgaCtevCpvg 64 
                 l++Ci C +C ++Cp             +l ++ ++l d+r+e+++  +++ +le+  +l++C+t  +C++ Cp+g
  KKY14966.1 209 LYECILCACCSTSCPsywwnseeylgpaILLQSYRWLADSREEHKA--ERKLALENSMSLYRCHTILNCSRTCPKG 282
                 578***********98888888888887666677999999999888..44455566889***************98 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.47   1.2e+03      35      52 ..     110     129 ..      97     131 .. 0.69
   2 !   28.5   2.4   4.8e-10   1.2e-06       8      56 .]     211     280 ..     206     280 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.47
     Fer4_10  35 eeavrkkvekCtg..cgaCv 52 
                 +++  +   +C +  cg+C+
  KKY14966.1 110 IDPTLTFRRSCREgiCGSCA 129
                 55555666778888888885 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 4.8e-10
     Fer4_10   8 tCirCgkCvkaCPadl.....................tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                  Ci C+ C ++CP+++                     ++ + k+e++   +++  +++C+++ +C + CP
  KKY14966.1 211 ECILCACCSTSCPSYWwnseeylgpaillqsyrwladSREEHKAERKLALENSMSLYRCHTILNCSRTCP 280
                 5************************************9999****************************9 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.7   4.3e+03      41      45 ..     125     129 ..     103     132 .. 0.72
   2 !   18.9   3.7   6.6e-07    0.0017       2      51 ..     212     282 ..     211     283 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.7
      Fer4_7  41 CgaCv 45 
                 Cg+C+
  KKY14966.1 125 CGSCA 129
                 44443 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 6.6e-07
      Fer4_7   2 CigCgaCvaaCpvkaielde.................eenekgtekv....eidpekClgCgaCvavCPtg 51 
                 Ci C  C   Cp+++ + +e                 +e++k  +k+     ++  +C +  +C ++CP+g
  KKY14966.1 212 CILCACCSTSCPSYWWNSEEylgpaillqsyrwladsREEHKAERKLalenSMSLYRCHTILNCSRTCPKG 282
                 ************9999977534444444444444333445555555544445666789999********98 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.4     3e-06    0.0078      26      76 ..     111     143 ..      85     151 .. 0.71
   2 ?   -0.4   0.1      0.44   1.1e+03      14      45 ..     192     220 ..     184     237 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3e-06
                 TTTTTSTTSSSSSSSSTTEEEEEESCECTTSSSSTHHHHHTTEEEEGGGSE CS
        Fer2  26 nggidipysCggggCgtClvevlegevqsdetelegeeldegklrlaCqti 76 
                 ++ + ++ sC++g Cg+C+  ++            g +       laC ++
  KKY14966.1 111 DPTLTFRRSCREGICGSCAMNID------------GVN------TLACLCR 143
                 44567899***********9866............666......3777765 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.44
                 TTTHBHHHHHHHTTTTTSTTSSSSSSSSTTEE CS
        Fer2  14 dgettlldaaeenggidipysCggggCgtClv 45 
                 dg+    +  e+ +++d  y+C    C+ C +
  KKY14966.1 192 DGKE-YRQSPEDRKKLDGLYECI--LCACCST 220
                 5555.555555544666666666..4666655 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.37   9.6e+02      35      43 ..     119     129 ..      74     137 .. 0.75
   2 ?    5.1   4.9      0.01        26      34      48 ..     210     224 ..     186     227 .. 0.66
   3 ?    4.6  10.5     0.014        36       1      49 [.     211     282 ..     211     283 .. 0.84
   4 ?    4.0   0.4     0.022        56       5      21 ..     269     288 ..     267     297 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.37
      Fer4_9  35 aCig..CgaCv 43 
                 +C +  Cg+C+
  KKY14966.1 119 SCREgiCGSCA 129
                 56555577775 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.01
      Fer4_9  34 eaCigCgaCveaCpk 48 
                  +Ci C  C   Cp+
  KKY14966.1 210 YECILCACCSTSCPS 224
                 567777777777775 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.014
      Fer4_9   1 kCtgCgaCveaCpagvv.vedaaerkarlraase......................eaCigCgaCveaCpkg 49 
                 +C+ C  C ++Cp+  + +e+  +  + l+ +++                       +C++   C   Cpkg
  KKY14966.1 211 ECILCACCSTSCPSYWWnSEEYLGPAILLQSYRWladsreehkaerklalensmslYRCHTILNCSRTCPKG 282
                 5***********8877646777788888888888999999999999999999998888888888******97 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.022
      Fer4_9   5 Cga...CveaCpagvvveda 21 
                 C++   C + Cp+g++  +a
  KKY14966.1 269 CHTilnCSRTCPKGLNPAKA 288
                 65444499999888876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2154.23
//
Query:       KKY14967.1  [L=366]
Description: putative gliotoxin biosynthesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00063   20.1   0.1     0.0015   18.9   0.1    1.7  1  AIG2_2    AIG2-like family


Domain annotation for each model (and alignments):
>> AIG2_2  AIG2-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   8.2e-08    0.0015      57      83 .]     207     248 ..     147     248 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 8.2e-08
      AIG2_2  57 k...............PsetYlkvlvkGAeesglPedYvkrL 83 
                 +               Ps +Yl+ +  GA+e++ P++Y + L
  KKY14967.1 207 PidnndsmrrepnyaqPSPRYLNLITSGADEHSFPNEYRAYL 248
                 0444444456666667**********************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 2592.17
//
Query:       KKY14968.1  [L=1641]
Description: hypothetical protein UCRPC4_g06555 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.50
# Mc/sec: 9875.67
//
Query:       KKY14969.1  [L=823]
Description: putative tbc domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-23   83.5   0.0    2.8e-23   82.7   0.0    1.4  1  RabGAP-TBC  Rab-GTPase-TBC domain
    6.9e-08   31.2   1.5    1.2e-07   30.4   1.5    1.3  1  SBE2        SBE2, cell-wall formation
  ------ inclusion threshold ------
       0.13   11.9   0.0       0.28   10.8   0.0    1.5  1  DUF4998     Domain of unknown function
       0.15   10.9   0.0       0.25   10.1   0.0    1.2  1  DUF5010     Domain of unknown function (DUF5010)
       0.16   12.7   2.0       0.43   11.3   2.0    1.7  1  Upf2        Up-frameshift suppressor 2


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.0   7.9e-27   2.8e-23       2     214 ..     547     769 ..     546     770 .. 0.90

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 7.9e-27
  RabGAP-TBC   2 elRgevWklllgyep...evkrlkksekkqeksekeksklekseeskelsqIkkDvprtfpes.esfknkqgqnqLeriLkaysiynpevgYcqGmndi 96 
                 ++Rg vW  ++g+e    e++++k  ++ ++ + +e ++ ++++++++l+ I +D    +p+   ++  +++ + L ++L+ay +y+ +vgY+ G++ +
  KKY14969.1 547 KMRGLVWGRAVGNELalnETSYAKALQRAKDLRASEIRDIQTKRSRQWLKEIVRDAATVYPDLnLFQVGSPMYKPLVNLLSAYVMYRSDVGYMHGLHLV 645
                 69***********9999999999999999999999**************************443555556***************************** PP

  RabGAP-TBC  97 vaplllvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhl.ke.....egldlelfaikwfltlflrefpletvlrlwD 189
                 +a +ll   d  +aF c+++ l++     ++t +   + r + + ++ l +k+p+l++ l ++     +gl+ e    + f tl+++ ++ e ++r+wD
  KKY14969.1 646 AANILLQISDPASAFVCMANALNRPLSLAFLTGDPAATSRHYSLAKQTLAYKFPALHDCLfNSadekgLGLQAEEVFEPMFRTLLSNGLDPERLARVWD 744
                 *****9999*************666666666666555999999****************7366999999****************************** PP

  RabGAP-TBC 190 .lllegekfvllrvalailklleeel 214
                   ++eg+++ ++r + ail l+e ++
  KKY14969.1 745 cWVFEGDRT-IIRAGTAILGLYEGQI 769
                 555599988.*********9988665 PP

>> SBE2  SBE2, cell-wall formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   1.5   3.3e-11   1.2e-07     444     508 ..     445     510 ..     419     515 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 3.3e-11
        SBE2 444 Gmedlilvsenkldvvshsrpswlppkdpeekklherqiskslsvasldqlek..nkdreeklikde 508
                  m d + +s++k  v++ +rpswlppkdp+e + h ++ ++ +  as+d   k   kdr  kl k+e
  KKY14969.1 445 VMIDPLPISKEKEKVLTRTRPSWLPPKDPKEERRHLKEYQRMM-AASIDAERKreSKDRTAKLEKEE 510
                 4888999*******************************98876.58888644312577777776666 PP

>> DUF4998  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.7e-05      0.28      73     124 ..     110     161 ..      91     180 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.7e-05
     DUF4998  73 tveviidnLeEgsytFsivtydkkgnsSlksevtgevYGdsYqasltnrslk 124
                 +  ++i + e++s   +i+ +d+ +n+Sl+ + t   + +sY   l nr+ k
  KKY14969.1 110 RRVYTISEEEDESAAVEIHSFDTVNNQSLSAKSTYRPFRQSYTGRLLNRTNK 161
                 555677777899999**********************************976 PP

>> DUF5010  Domain of unknown function (DUF5010)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   6.9e-05      0.25     218     284 ..     124     191 ..     110     202 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 6.9e-05
     DUF5010 218 vleapvvdginnWfelp..rgssskesytvsalngkavGvavpgflvvdstssmfldadhGrkltkald 284
                 ++e    d++nn +  +  +  + ++syt + ln+++  + vp+ +++  ++s+f+d+ +Gr lt+ l+
  KKY14969.1 124 AVEIHSFDTVNNQSLSAksTYRPFRQSYTGRLLNRTNKFTVVPAPIIT-PPASQFIDSANGRCLTEVLS 191
                 34445678888766543003445599******************9996.9***************9997 PP

>> Upf2  Up-frameshift suppressor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.0   0.00012      0.43      11      43 ..     464     502 ..     454     512 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
        Upf2  11 k.....evdpeeeeeFerelakmmaesles.rknerkka 43 
                 +      +dp+ee    +e+++mma s+++ rk+e+k +
  KKY14969.1 464 RpswlpPKDPKEERRHLKEYQRMMAASIDAeRKRESKDR 502
                 2455556788******************77699998843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (823 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       855  (0.0476881); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.51
# Mc/sec: 4854.07
//
Query:       KKY14970.1  [L=509]
Description: putative telomerase reverse [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-28   98.5   0.1    7.1e-28   97.4   0.1    1.6  1  Telomerase_RBD  Telomerase ribonucleoprotein complex - RNA bi
    9.8e-15   54.7   0.0    7.3e-09   35.5   0.0    2.4  2  RVT_1           Reverse transcriptase (RNA-dependent DNA poly
  ------ inclusion threshold ------
       0.05   13.5   0.0       0.13   12.2   0.0    1.6  1  Glyoxalase_2    Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Telomerase_RBD  Telomerase ribonucleoprotein complex - RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4   0.1   1.2e-31   7.1e-28      46     133 ..       1      89 [.       1      90 [. 0.95

  Alignments for each domain:
  == domain 1  score: 97.4 bits;  conditional E-value: 1.2e-31
                     -TTTS-S--GGG-GGG-S.S.S------HHHHHHHHHHHHHHHHHHHHTCHHHHHHHH-EEEE--SSS-SEEEE-HHHHHHHHHHHHHH CS
  Telomerase_RBD  46 lhevmqglkvsdvewlsp.ekeksqklslsdaekrkellseflywlfdslliplirsfFYvTessktrnrlfyFrkdvWrkltkpalak 133
                     +h++ q++kv++++wl+p +  k++k+  sd++kr ellsefly++fds+liplirs+F+vTes+ +rn+lf+Fr+d+W+kl++p l++
      KKY14970.1   1 MHNIGQNIKVRSIPWLRPpTVPKDEKIASSDMNKRLELLSEFLYYVFDSILIPLIRSHFHVTESNMHRNQLFFFRHDIWQKLAEPSLRS 89 
                     79999************63667899999*********************************************************9987 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   6.6e-07     0.004      59     108 ..     190     233 ..     145     255 .. 0.73
   2 !   35.5   0.0   1.2e-12   7.3e-09     116     204 ..     312     401 ..     292     427 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.6e-07
                 ...HCCHTS-.-EEEEEEBCCGCCCSBB-GGGGGGG-EEET.......... CS
       RVT_1  59 lkalkkkkka.klllklDlkkaFdsvpleellrkltafkvptklinliksf 108
                 ++++++++++  +++k D++ +Fds+p +el++ + ++  +++       +
  KKY14970.1 190 KSTVASQGSNkLYFVKADVQTCFDSIPQHELIQVVRRIIKNHQ-------Y 233
                 333444444449**********************999776633.......4 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 1.2e-12
                 ........TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T........TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-E CS
       RVT_1 116 vrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkra..kgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtk 204
                 ++v +  ++ + +k+g+pqGs+lS ll+nlf    +      +  ++  llr +DD+l+++ +++++ + l+++ +  ++ g++ np+K+ 
  KKY14970.1 312 GNVVKIGKQYYRQKRGIPQGSILSSLLCNLFYGCYESASLG-FlqEDSMLLRLIDDFLLITPNPSHARRFLQIMADGSERFGITTNPAKSL 401
                 4443334588999*****************97665555555.44789******************************************85 PP

>> Glyoxalase_2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.2e-05      0.13      49      94 ..     186     230 ..     172     238 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.2e-05
                   HH-------S--SS-EEEEEES-HHHHHHHH..GGGS-EEEEEEE- CS
  Glyoxalase_2  49 linldesiaeqsnnfeLyFevedvdaflqklkeaeniellhelkek 94 
                   l ++++++a q +n +LyF+++dv+ +++ + ++e i+++ +++++
    KKY14970.1 186 LKDFKSTVASQGSN-KLYFVKADVQTCFDSIPQHELIQVVRRIIKN 230
                   55666667776665.7***********************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3313.75
//
Query:       KKY14971.1  [L=1386]
Description: putative rho guanyl nucleotide exchange [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-34  117.9   1.5      1e-33  117.1   1.5    1.4  1  RhoGEF    RhoGEF domain


Domain annotation for each model (and alignments):
>> RhoGEF  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.1   1.5   5.6e-38     1e-33       1     182 []     636     854 ..     636     854 .. 0.90

  Alignments for each domain:
  == domain 1  score: 117.1 bits;  conditional E-value: 5.6e-38
                 HHHHHHHHHHHHHHHHHHHHHHTHCCCHHCTCCHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHH................................... CS
      RhoGEF   1 vikElleTErsYvrdLkvlvevylkplselevlseeeikiiFsnieeilelhrsflleeLeerl.................................k. 65 
                 +i El+eTE s+ rd+ v+v++y  ++se++ l++++ +i+F n eei++++ s + ++L++                                   k 
  KKY14971.1 636 IISELIETEVSFNRDMTVVVDIYKATASESVKLTKDDERILFTNSEEIVKFS-SSFAKDLKAAAgelyqqlknfrkqgdrtskvtstsgvsdetssqKq 733
                 799*************************999*********************.8888888888888889999999******999999999888776615 PP

                 ..HHHTTSS-S-SHHHHHHHHSTHHH.HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGG..TT--HHHHTTHHHHHHHHHHHHHHHHHHTS-T CS
      RhoGEF  66 ..eseeqkeaqsigdvflkfadkfkk.YseYcsnypnalkllkelskknkkfkafleeaeerpec..skldLeslLikPvqRlprYpLLLkellkntpe 159
                    ++ +++++ i+dvf k+++k+++ Y +Y++n++++++ l+ l+ +nk    +l+e+ ++++   +  dL+slL+kPvqR+++YpLL+ +ll  t++
  KKY14971.1 734 aaMISGDSDEVPIADVFTKHLRKMEEvYMSYTKNHEESIRKLQALR-ENKAAVFWLNECAKESNDltHAWDLSSLLVKPVQRFLKYPLLVADLLSVTDK 831
                 666777888999***********9978*****************76.666655799999877554459******************************* PP

                 TSHHHHHHHHHHHHHHHHHHHHH CS
      RhoGEF 160 shpdyealkkaleaikevaseiN 182
                 ++ +y +l++ale +k +as+iN
  KKY14971.1 832 ESVEYTKLNEALEGLKLMASRIN 854
                 *********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1115  (0.0621897); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.93u 0.28s 00:00:01.21 Elapsed: 00:00:00.46
# Mc/sec: 9102.71
//
Query:       KKY14972.1  [L=202]
Description: putative mfs transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.4    9.3   6.4         19    5.6   6.4    2.0  1  DUF4396   Domain of unknown function (DUF4396)


Domain annotation for each model (and alignments):
>> DUF4396  Domain of unknown function (DUF4396)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   6.4    0.0011        19      17     129 ..      15     169 ..       7     179 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0011
     DUF4396  17 aiGdilgmviltslslalglpmaatmilsvvlalllgllletalllrekglslaealktAlkadtlSmlamevgmnlvmlll...l............. 99 
                 +i +ilg  ++t +++    ++  +m++++v +l +g+l+   ll  + +++  + + +++ a ++  lam+++ ++  +++   +             
  KKY14972.1  15 SILMILGWGLFTDIKP--ITSIGKVMAFEIVTGLDVGFLFDAPLLSLQASVEQHDVATATATAGFIRNLAMSISIVVSGTIFengMslqapkllkaglp 111
                 4455555557887888..7788899*****************999998777777777777888888888888888888888754436677788888888 PP

     DUF4396 100 ...............................gamdaeleltsplfWfslqlsllaGflval 129
                                                +a+      +  l W+sl++++ aGf+v++
  KKY14972.1 112 atlisefehgqasanvdiirtiddhsqrlaiKAA---YASSLRLVWISLAAAAGAGFIVSI 169
                 8888888888888888888888888776444333...336666788888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1475.00
//
Query:       KKY14973.1  [L=438]
Description: hypothetical protein UCRPC4_g06560 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2883.72
//
Query:       KKY14974.1  [L=165]
Description: putative tropomyosin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-52  175.8  29.9    6.2e-52  175.5  29.9    1.1  1  Tropomyosin_1    Tropomyosin like
    5.5e-08   32.5  30.4     0.0018   17.7  10.7    2.7  2  Tropomyosin      Tropomyosin
    0.00042   20.5   6.2    0.00042   20.5   6.2    3.0  3  KLRAQ            Predicted coiled-coil domain-containing prot
    0.00097   19.4  30.2      0.039   14.2   8.3    2.2  2  ATG16            Autophagy protein 16 (ATG16)
     0.0011   17.9  31.4      0.049   12.5  10.4    2.0  2  Spc7             Spc7 kinetochore protein
     0.0014   16.5  26.3     0.0017   16.2  26.3    1.0  1  Myosin_tail_1    Myosin tail
     0.0014   17.8  25.3      0.024   13.8  11.3    2.0  2  Taxilin          Myosin-like coiled-coil protein
     0.0018   18.6  28.8      0.025   15.0  10.9    2.2  2  DUF4200          Domain of unknown function (DUF4200)
     0.0019   17.5  27.2      0.026   13.8  12.2    2.1  2  DUF3450          Protein of unknown function (DUF3450)
      0.008   16.7  27.3      0.014   16.0   5.5    3.6  4  BST2             Bone marrow stromal antigen 2
  ------ inclusion threshold ------
      0.011   15.7  14.5      0.022   14.8   2.2    2.3  2  DUF1664          Protein of unknown function (DUF1664)
      0.012   14.1  27.4      0.014   13.8  27.4    1.1  1  MAD              Mitotic checkpoint protein
      0.012   14.5  27.9       0.19   10.6   9.3    2.5  2  CALCOCO1         Calcium binding and coiled-coil domain (CALC
      0.013   15.6   5.0      0.013   15.6   5.0    2.1  2  Laminin_II       Laminin Domain II
      0.013   15.6  28.1        0.1   12.7  13.1    2.9  3  ADIP             Afadin- and alpha -actinin-Binding
      0.016   14.4  26.1       0.02   14.0  26.1    1.2  1  DUF4686          Domain of unknown function (DUF4686)
      0.018   15.4  33.4      0.058   13.8  14.2    2.1  2  Uso1_p115_C      Uso1 / p115 like vesicle tethering protein, 
       0.02   15.1  23.8      0.041   14.1  12.5    2.4  2  TMF_TATA_bd      TATA element modulatory factor 1 TATA bindin
      0.025   14.4  22.4       0.09   12.6   7.9    2.1  2  DUF724           Protein of unknown function (DUF724)
      0.048   13.9  30.4         63    3.7  30.4    2.4  1  Jnk-SapK_ap_N    JNK_SAPK-associated protein-1
       0.05   12.6   5.0      0.061   12.3   5.0    1.0  1  Transketolase_N  Transketolase, thiamine diphosphate binding 
      0.051   13.6  30.5       0.74    9.8   5.9    2.5  2  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
      0.077   13.5  37.5      0.031   14.8  21.6    2.1  2  APG6_N           Apg6 coiled-coil region
      0.078   13.6  22.9        1.2    9.7   0.9    2.2  2  Striatin         Striatin family
      0.087   13.3  22.8       0.15   12.5  22.8    1.3  1  Fez1             Fez1
      0.096   12.5  35.3       0.17   11.7  15.9    2.0  2  ERM              Ezrin/radixin/moesin family
        0.1   11.8  27.4          2    7.5   6.8    2.4  2  HAP1_N           HAP1 N-terminal conserved region
       0.11   12.7  26.7          3    8.0   0.7    4.9  4  bZIP_1           bZIP transcription factor
       0.11   11.9  22.6        1.2    8.4   5.3    2.0  2  DUF4407          Domain of unknown function (DUF4407)
       0.11   12.7  22.5       0.29   11.4   5.3    3.2  3  Cortex-I_coil    Cortexillin I, coiled coil
       0.14   12.6  17.5         10    6.6   2.8    4.4  4  FlaC_arch        Flagella accessory protein C (FlaC)
       0.15   11.4  29.5       0.84    8.9  16.0    2.7  2  GAS              Growth-arrest specific micro-tubule binding
       0.17   11.9  35.3      0.068   13.2  10.5    2.8  3  TPR_MLP1_2       TPR/MLP1/MLP2-like protein
       0.22    9.7  21.6        1.2    7.3  19.5    1.7  1  EzrA             Septation ring formation regulator, EzrA
       0.23   11.9  21.0       0.11   13.0   5.1    3.6  3  Cep57_MT_bd      Centrosome microtubule-binding domain of Cep
       0.25   11.0  20.9       0.61    9.8   2.4    3.1  3  RPN7             26S proteasome subunit RPN7
       0.36    9.6  23.2      0.072   11.9   8.3    2.0  2  Fmp27_WPPW       RNA pol II promoter Fmp27 protein domain
       0.36   10.5  31.5          2    8.1  20.6    2.3  2  Lebercilin       Ciliary protein causing Leber congenital ama
       0.47   10.6  21.4        5.4    7.2   4.5    3.2  3  TolA_bind_tri    TolA binding protein trimerisation
       0.62   10.5  37.3        2.2    8.8   8.1    4.1  2  ZapB             Cell division protein ZapB
       0.66    9.8  23.4        3.4    7.5   4.1    3.2  3  Phage_GP20       Phage minor structural protein GP20
       0.86    9.2  25.1         23    4.5   1.3    2.9  2  PI3K_P85_iSH2    Phosphatidylinositol 3-kinase regulatory sub
       0.88    9.9  22.9        0.4   11.0   1.2    3.4  3  BLOC1_2          Biogenesis of lysosome-related organelles co
       0.94    9.7  12.2        1.5    9.0   0.6    3.4  3  DUF3782          Protein of unknown function (DUF3782)
        1.1    8.0  26.5        1.6    7.5  26.5    1.2  1  DUF812           Protein of unknown function (DUF812)
        1.1    6.6  26.4        1.5    6.3  26.4    1.1  1  DUF3584          Protein of unknown function (DUF3584)
        1.2    8.9  29.0        4.3    7.1  15.3    2.8  2  KASH_CCD         Coiled-coil region of CCDC155 or KASH
        1.2    8.3  19.1       0.53    9.5   3.2    2.1  2  TMPIT            TMPIT-like protein
        1.2   10.3  22.2        2.4    9.3   4.4    3.2  3  SOGA             Protein SOGA
        1.3    9.1  29.5       0.43   10.7   9.1    2.1  2  UPF0242          Uncharacterised protein family (UPF0242) N-t
        1.3    8.8  15.2       0.63    9.8   4.3    2.6  2  Lectin_N         Hepatic lectin, N-terminal domain
        1.3    8.0  22.9        0.5    9.4   8.2    2.1  2  Atg14            Vacuolar sorting 38 and autophagy-related su
        1.5    7.3  24.7       0.39    9.3   8.1    2.0  2  FapA             Flagellar Assembly Protein A
        1.6    8.8   8.8       0.69    9.9   1.8    3.3  3  VGPC1_C          C-terminal membrane-localisation domain of i
        1.7    8.0  21.0         23    4.2  21.0    1.9  1  FAM76            FAM76 protein
        1.8    8.5  29.4       0.55   10.2   1.7    3.9  4  Prefoldin        Prefoldin subunit
        2.1    8.6  16.3        1.7    9.0   0.4    3.4  3  WXG100           Proteins of 100 residues with WXG
        2.2    8.0  25.4        4.2    7.1   6.8    2.3  2  DUF4201          Domain of unknown function (DUF4201)
        2.4    8.2  33.0        2.8    8.0  12.7    3.6  3  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding
        2.5    8.6  19.9         30    5.0   8.6    3.0  2  T3SSipB          Type III cell invasion protein SipB
        2.9    8.2  17.5        4.2    7.7   0.6    3.9  3  YbaB_DNA_bd      YbaB/EbfC DNA-binding family
        3.1    7.0  25.3         30    3.8  25.3    2.5  1  Dynamitin        Dynamitin
        3.3    7.2  28.6       0.74    9.3  13.0    2.4  2  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.3    7.5  14.1        6.1    6.6   3.6    2.6  2  Spc29            Spindle Pole Component 29
        3.7    7.5  26.0        9.7    6.2  26.0    1.6  1  Rootletin        Ciliary rootlet component, centrosome cohesi
          4    8.1  20.8        5.4    7.7   8.5    3.1  3  YabA             Initiation control protein YabA
          4    7.6  29.2         15    5.7  13.8    2.8  3  BRE1             BRE1 E3 ubiquitin ligase
          4    6.9  15.9        6.4    6.3  15.9    1.3  1  Exonuc_VII_L     Exonuclease VII, large subunit
        4.2    7.3  19.3        2.3    8.1   4.5    3.8  4  GIT_CC           GIT coiled-coil Rho guanine nucleotide excha
        4.7    7.7  10.7         16    6.0   2.1    3.8  3  LPP              Lipoprotein leucine-zipper
        4.8    6.5  11.0       0.58    9.5   4.3    1.9  2  YjcZ             YjcZ-like protein
        4.9    4.9  19.5        7.1    4.3  19.5    1.2  1  Nup88            Nuclear pore component
        5.8    7.2  27.4        5.7    7.2   6.1    3.0  3  Seryl_tRNA_N     Seryl-tRNA synthetase N-terminal domain
        5.9    7.6  22.5        2.2    9.0   3.7    3.6  4  SlyX             SlyX
        6.1    5.3   9.2        9.5    4.6   9.1    1.3  1  FUSC             Fusaric acid resistance protein family
        6.8    7.1  24.2        2.8    8.4   2.1    3.6  3  CLZ              C-terminal leucine zipper domain of cyclic n
        7.5    6.7  13.6        1.7    8.8   2.8    3.1  2  DUF2730          Protein of unknown function (DUF2730)
        7.8    7.0  28.7        1.5    9.3  14.0    3.3  2  KELK             KELK-motif containing domain of MRCK Ser/Thr
        7.8    6.8  24.9        6.3    7.1   5.8    2.8  2  DUF5082          Domain of unknown function (DUF5082)
        8.7    6.6  29.7       0.82    9.9   1.3    3.8  2  Spc24            Spc24 subunit of Ndc80
        9.7    5.9  11.2       0.73    9.5   4.3    1.9  2  IFT46_B_C        Intraflagellar transport complex B protein 4
        9.7    5.6  30.0         39    3.6  30.0    1.8  1  HMMR_N           Hyaluronan mediated motility receptor N-term


Domain annotation for each model (and alignments):
>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.5  29.9   2.8e-54   6.2e-52       1     142 [.      11     152 ..      11     153 .. 0.99

  Alignments for each domain:
  == domain 1  score: 175.5 bits;  conditional E-value: 2.8e-54
  Tropomyosin_1   1 klnsLkleaeeaqekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEeeleesdkkL 96 
                    k+n+L++ea+e q+k+eel++k+K+leqenl+keq+i+sLt++n +le+evekle+ +keak++a +s++++t+ne+l+r++qlLE+e+ee+dk+L
     KKY14974.1  11 KMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKAEAGSSSHHATQNETLQRRLQLLEDEAEEADKTL 106
                    9*********************************************************************************************** PP

  Tropomyosin_1  97 kettekLretdvkaeelERkvkaLeqerdewekkyeeleekykeak 142
                    +et+ekLr+tdvka+++ERkv+aLe+ rd+we+kyee+++ky++ +
     KKY14974.1 107 RETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQ 152
                    ******************************************9987 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7  10.7   8.3e-06    0.0018       1      77 [.      10      86 ..      10      87 .. 0.96
   2 !   17.1  15.9   1.3e-05    0.0028      34     103 ..      81     150 ..      69     157 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 8.3e-06
  Tropomyosin  1 kklkqveeeldeaeerlekakkkleeaekkaekaeaEvaalnrriqlleeelerteerleealekLeeaekaadese 77
                 kk+++++ e+de + + e++++k++  e++  + e++ ++l+ r  lle+e+e+ e+ ++ea+++    + +a ++e
   KKY14974.1 10 KKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKAEAGSSSHHATQNE 86
                 8*************************************************************999999988888776 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 1.3e-05
  Tropomyosin  34 aeaEvaalnrriqlleeelerteerleealekLeeaekaadeserarKvlEnrelkdeekleeleaqlke 103
                    +  ++l+rr+qlle+e e++++ l e+ ekL +   +a   er + +lE+   + e k ee+ +++ +
   KKY14974.1  81 HATQNETLQRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYAD 150
                  4456689**********************************************99999999998887765 PP

>> KLRAQ  Predicted coiled-coil domain-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   6.2   1.9e-06   0.00042      23      82 ..      21      80 ..       4      87 .. 0.82
   2 ?    7.3   2.0     0.026       5.6      55      84 ..      84     113 ..      82     131 .. 0.73
   3 ?    1.6   3.6       1.5   3.3e+02      37      90 ..     101     154 ..      95     164 .. 0.43

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.9e-06
       KLRAQ 23 eEqskeaslkeelkekeqslrkseqEvdsLtFrNkqLekrvellqeeleveekkvksksk 82
                e q+k+++l+ ++k+ eq+  + eq++ sLt rN  Le  ve l   +++++ ++ s s+
  KKY14974.1 21 ENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKAEAGSSSH 80
                78*********************************************9986655444443 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.026
       KLRAQ  55 rNkqLekrvellqeeleveekkvksksknk 84 
                 +N+ L++r++ll +e e++ k ++  +++ 
  KKY14974.1  84 QNETLQRRLQLLEDEAEEADKTLRETNEKL 113
                 699**************9999855555422 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 1.5
       KLRAQ  37 ekeqslrkseqEvdsLtFrNkqLekrvellqeeleveekkvksksknkseaqkk 90 
                 e +++lr +++ +   + +  + e++v++l    ++ e k++  +k+    qk+
  KKY14974.1 101 EADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKE 154
                 444445555544444555555555555555444444443322222222222222 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   8.3   0.00018     0.039      93     150 ..      15      72 ..       2      76 .. 0.86
   2 !   10.9  14.5    0.0018       0.4      90     167 ..      85     162 ..      71     165 .] 0.74

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 0.00018
       ATG16  93 lyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelreke 150
                 l  +  e++ ++ el++++++le++  ++e+ + +l++++  le +++++e  ++e +
  KKY14974.1  15 LRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAK 72 
                 555567999*****************************************99999865 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0018
       ATG16  90 laelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlql 167
                  ++l+++ + l++   e+ ++l++ +ekl++ + +  + e++++ale ++++ e + +e +k   dlq El+ L++ +
  KKY14974.1  85 NETLQRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELEVSM 162
                 455666666677777777777777777777777777777888888888888888899999999999999999988765 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5  10.4   0.00022     0.049     197     261 ..       8      72 ..       2      82 .. 0.86
   2 !   11.4  13.1   0.00048       0.1     174     254 ..      83     159 ..      77     162 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00022
        Spc7 197 dkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeck 261
                  ++++++lr e +e++a++ee+++++++l+++  ++e++i++l+ +   le+e+++ e+ ++e k
  KKY14974.1   8 IQKKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAK 72 
                 57899999999999999999999999999999999999999999999999999999998777765 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00048
        Spc7 174 eekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeae 254
                 ++ ++l+++l+ l+++aee      + L+e+ e+l++ +++  + +++++ l++ +++ e+k ee+++++++l++e++e e
  KKY14974.1  83 TQNETLQRRLQLLEDEAEE----ADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELE 159
                 5678999999999998887....6679***************************************************987 PP

>> Myosin_tail_1  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2  26.3   7.9e-06    0.0017     811     960 ..       9     161 ..       5     164 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7.9e-06
  Myosin_tail_1 811 qReleearasrdeilaqakesekklksleaellqlqedlaaaerakrqveqerDeladeiasgas...kksalldekRrleariaqleeeleeeqs 903
                    q+ ++ +r   de  a+  e + k+k+le e lq + d+++  +    +e+e + l+  i++ ++   + s  + +   l+ r++ le+e ee+++
     KKY14974.1   9 QKKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKAeagSSSHHATQNETLQRRLQLLEDEAEEADK 104
                    67788899999**999************************99999999********99888765511145667778889***************** PP

  Myosin_tail_1 904 nvellndrlrkatlqveqltaeLsaeRsasqksesarqqlerqnkelkakLqelega 960
                    +   +n++lr++  ++ + + +++a  sa  + es  +++ ++  +l+  Lqele +
     KKY14974.1 105 TLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELEVS 161
                    ******************************************************976 PP

>> Taxilin  Myosin-like coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   7.8    0.0022      0.48      12      64 ..      18      70 ..       6      75 .. 0.76
   2 !   13.8  11.3   0.00011     0.024     195     285 ..      69     159 ..      65     164 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0022
     Taxilin 12 klespeekleaLvkkyaelleerkrlqkqlkklkkkleqlqkekeqlqaelsk 64
                + ++++ k+e+L+ k++ l +e+ +++++++ l  ++  l +e e+l++  ++
  KKY14974.1 18 EADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKE 70
                45667888888888888888888888888888888888888888888876665 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 0.00011
     Taxilin 195 keakeltkkvkalketekelkeqlnlYaeKfeefqdtLakSnelFatFkkEmekmtkktkklEketnlwkskfektnkallemaeertekk 285
                 keak+   + +    +++ l+ +l+l ++  ee  +tL   ne   +          k++ lE + ++w sk+e++ k+ +++ +e +e +
  KKY14974.1  69 KEAKAEAGSSSHHATQNETLQRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELE 159
                 6777788888889999*******************************************************************99999876 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   9.9    0.0051       1.1      42     107 ..       7      72 ..       1      73 [. 0.89
   2 !   15.0  10.9   0.00011     0.025      24     100 ..      83     159 ..      77     164 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0051
     DUF4200  42 eleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleekleeyk 107
                  ++++++ +     en+ak ++ + k+++ ++++ +ke++i  l++    l++e ekle  ++e k
  KKY14974.1   7 LIQKKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAK 72 
                 57777777888889*********************************************9998865 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 0.00011
     DUF4200  24 rleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekle 100
                 +++e+l++r + le++ +e  ++l + ++ l++ d k    ++k++  + ++++ e++ +++ ++ ++l++e+++le
  KKY14974.1  83 TQNETLQRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELE 159
                 44555555555555555555555555555555555555555555555555555555555555555555555555554 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8  12.2   0.00012     0.026       9      99 ..       2      93 ..       1      96 [. 0.92
   2 !    7.8  11.2     0.008       1.8      15      91 ..      89     165 .]      82     165 .] 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.00012
     DUF3450  9 lasgal.aatldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelv 99
                +a++al ++++++++ ea + +a+ ++ q+ki+ l++e  + ++++++l+ ++  le++ e+le+ ++++++e  s     ++ e ++r+l+
  KKY14974.1  2 AAANALiQKKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKAEAGSSSHHATQNETLQRRLQ 93
                444444699************************************************************************99999999987 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.008
     DUF3450  15 aatldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieei 91 
                 +  l+ +++eae+a ++ +++++k  + d ++  ++++++al++  ++ e + e++++  a++++e+++le ++ +i
  KKY14974.1  89 QRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELEVSMGNI 165
                 56677788999999999999999999999999999999999999999999999999999999999999999888776 PP

>> BST2  Bone marrow stromal antigen 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.8     0.016       3.5      57      84 ..      15      43 ..       2      49 .. 0.71
   2 ?    3.0   1.0       0.7   1.5e+02      66      89 ..      52      75 ..      39      77 .. 0.68
   3 ?    2.1   3.9       1.3   2.9e+02      56      88 ..      80     112 ..      61     113 .. 0.79
   4 !   16.0   5.5   6.3e-05     0.014      24      81 ..     104     161 ..      95     165 .] 0.93

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.016
                HHHHHHHHHHHHHHHHHHHHHHHHH.HHH CS
        BST2 57 ekaqsqkqqakvqelqgeikkLnqk.Lqd 84
                 + ++ ++qakv+elq +ik+L+q+ Lq+
  KKY14974.1 15 LRIEADENQAKVEELQAKIKTLEQEnLQK 43
                44455678899***********9962554 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.7
                HHHHHHHHHHHHHHHHHHHHHHHC CS
        BST2 66 akvqelqgeikkLnqkLqdaeaev 89
                ++   l+ e++kL+  +++a+ae 
  KKY14974.1 52 HRNGLLEAEVEKLESGIKEAKAEA 75
                455568999999999999999885 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  56 kekaqsqkqqakvqelqgeikkLnqkLqdaeae 88 
                 ++ +q++  q+++q l++e ++ ++ L++++++
  KKY14974.1  80 HHATQNETLQRRLQLLEDEAEEADKTLRETNEK 112
                 456677777888888999999988888888776 PP

  == domain 4  score: 16.0 bits;  conditional E-value: 6.3e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  24 rqLtqaqeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqk 81 
                 + L++++e+lr+++ +a  +++ v+ L+++ ++ +++ +++ +k  +lq+e+++L+ +
  KKY14974.1 104 KTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELEVS 161
                 689***************************************************9866 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.2     0.026       5.7      61     122 ..       5      66 ..       1      70 [. 0.85
   2 ?   14.8   2.2    0.0001     0.022      57     123 ..      81     147 ..      71     148 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.026
     DUF1664  61 krhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                    ++++++ +  + de+++  +e+++++++++++  + ++d++s+ +    le+++e++e+
  KKY14974.1   5 NALIQKKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLES 66 
                 55567889999999999999999999999999999999999999999999999999999885 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 0.0001
     DUF1664  57 laatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerieek 123
                  a++ + L++r++ ++++ +e  ++ +e++e++ +   +  + +++v+++++a  ++esk e++ +k
  KKY14974.1  81 HATQNETLQRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKK 147
                 4667789******************************************************999876 PP

>> MAD  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8  27.4   6.2e-05     0.014      28     177 ..       4     160 ..       1     164 [. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.2e-05
         MAD  28 arielekkasalkrqleeesdrnqelqkrikllekreeekeealreqiElarlkkknlealnkkekekesklae..arev.isalknelaelkrqiekq 123
                 a +  +kk +al+ + +e++++ +elq++ik le++  +ke+     + ++ l++   e+l++  ke +++  +   + + +++l+ +l+ l+ ++e++
  KKY14974.1   4 ANALIQKKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKAEAGSssHHATqNETLQRRLQLLEDEAEEA 102
                 6678899****************************99999999999999999998888888877776655443300333314679999*********** PP

         MAD 124 elelsekeseleelqerldllkkklseleqliqqlekkqkelaea....eqrikeLef 177
                 +  l+e++++l++   +   +++k++ le  + q+e+k +e+a++    ++ ++eLe+
  KKY14974.1 103 DKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKyadlQKELQELEV 160
                 *******************************977766666665541111666777776 PP

>> CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  14.3     0.016       3.5     109     189 ..       4      91 ..       1     104 [. 0.71
   2 ?   10.6   9.3   0.00086      0.19      37      93 ..     103     159 ..      91     164 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.016
    CALCOCO1 109 lseelaeeksalleakeesearirELEeDiktltqralekEteLeRlkerak.......kalaqrkeeeaerkqlqakleqseeelrs 189
                 +++ ++++ +al  +++e++a++ EL   iktl q  l+kE ++  l+ r         k+    ke +ae  ++  +  q e+  r+
  KKY14974.1   4 ANALIQKKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGlleaeveKLESGIKEAKAEAGSSSHHATQNETLQRR 91 
                 5667788889999999999**********************99999999987666666666666666666655555444333333333 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00086
    CALCOCO1  37 eeclreraeLlqaqeaanrqrekekeeykrdreeldrerkelesrveelkeelkesr 93 
                 + +lre +e l+++++   + e+  +  +++r++++++ +e+ ++ ++l++el+e++
  KKY14974.1 103 DKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELE 159
                 44689************************************************9875 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   5.6      0.34        75      15      80 ..       8      73 ..       3      81 .. 0.72
   2 ?   15.6   5.0   5.7e-05     0.013      14      94 ..      80     157 ..      68     161 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.34
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHH CS
  Laminin_II 15 vleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkq 80
                +++++++l  + ++ ++k++e++++++  +++  ++ + i +  +    Le ++++L++ +ke k 
  KKY14974.1  8 IQKKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKA 73
                567777777788888888888888877777776677777777777777788888888877776654 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 5.7e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHH CS
  Laminin_II  14 evleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 
                 +   q + l+ +l+ ++++++e++++++etnek+++        +r+v+ Le   +q ++k +e+ ++      l ++++e
  KKY14974.1  80 HHATQNETLQRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYAD---LQKELQE 157
                 33456789********************************************************9999888...7777776 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7  13.1   0.00048       0.1      42     121 ..      13      91 ..       4      96 .. 0.85
   2 ?    4.2  10.3      0.19        42      73     133 ..      82     142 ..      77     147 .. 0.55
   3 ?    6.4   0.9      0.04       8.7      59      93 ..     124     158 ..     120     164 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00048
        ADIP  42 ysLlqardrdleqreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrl 121
                 ++L    d++++  e+l+++i++le e+ +++++i +l+ ++  le e++ +++  ++++++  + ++ + ++ e lqr 
  KKY14974.1  13 NALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKAEAGSSSH-HATQNETLQRR 91 
                 566667899*************************************************9999877655.55677777774 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.19
        ADIP  73 qskierlktqleqlerelalvqakerqlekklktleqklknekeelqrlknalqqiktqya 133
                  ++ e l+++l+ le e++ + +++r+++ kl++++ k+    +++q l++a +q + +y+
  KKY14974.1  82 ATQNETLQRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYE 142
                 4555556666666666666666666666666666666666666666666665555555555 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.04
        ADIP  59 netirkleaeierlqskierlktqleqlerelalv 93 
                 +++++ le+  ++ +sk+e + +++++l++el+ +
  KKY14974.1 124 ERKVQALESARDQWESKYEEMAKKYADLQKELQEL 158
                 55666666666666666666666666666666543 PP

>> DUF4686  Domain of unknown function (DUF4686)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0  26.1   9.3e-05      0.02     153     316 ..       5     160 ..       1     164 [. 0.82

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.3e-05
     DUF4686 153 kkqLeekikeaseneaklkqqlqeeqqkrklLdqnveeLqqqvrslrdkeaqlertnsqqqlriqqqeaqlkklenekrksdehlksnqeLsekLsslq 251
                 ++ +++k++ ++ ++++ +++++e q k k L+q+  +  q + sl +++  le  + ++       e  +k+ ++e   s  h  +n+ L+ +L  l 
  KKY14974.1   5 NALIQKKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKL-------ESGIKEAKAEAGSSSHHATQNETLQRRLQLLE 96 
                 6678999999999*********************98888889999999999988877666.......77777788888889999999999999999998 PP

     DUF4686 252 qekealqe...elqqvLkqldahvrkynekqehhkaklrrvkelllkeveqrderikqLeneiailks 316
                  e e+  +   e ++ L+q d++  +y+ k     + l+ +++ +  + e++ ++  +L++e++ l+ 
  KKY14974.1  97 DEAEEADKtlrETNEKLRQTDVKAGHYERKV----QALESARDQWESKYEEMAKKYADLQKELQELEV 160
                 8877554311156667888888888887776....45999**********************998865 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  13.0     0.019       4.2       6      80 ..       8      85 ..       3      87 .. 0.72
   2 ?   13.8  14.2   0.00026     0.058       8      90 ..      83     163 ..      76     165 .] 0.80

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.019
  Uso1_p115_C  6 leseaaslkdeneklkaelqslskalesleqk.....eakkaaesqakeleaenkklekeleklraelkeekekekekqk 80
                 ++++ + l+ e+ + +a++++l+ +++ leq+     +   + ++++  leae++kle+ +++++ae+  +   +   q+
   KKY14974.1  8 IQKKMNALRIEADENQAKVEELQAKIKTLEQEnlqkeQDITSLTHRNGLLEAEVEKLESGIKEAKAEAGSSSHHAT--QN 85
                 6888888888999999999999999999999866444445556667777888888888888888888776655554..44 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 0.00026
  Uso1_p115_C   8 seaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelkeekekekekqkEldDLLlllg 90 
                  +++++l++  + l++e+++++k l+++++k  + + + +a ++e ++++le++ ++ +++++e ++k+ + qkEl +L + +g
   KKY14974.1  83 TQNETLQRRLQLLEDEAEEADKTLRETNEK--LRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELEVSMG 163
                  445666666667777777777777777766..8889999*****************************877*****9966665 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1  12.5   0.00019     0.041       7      81 ..      19      93 ..      14     107 .. 0.90
   2 ?    3.8   6.3      0.29        64      17     102 ..     109     156 ..      96     162 .. 0.38

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 0.00019
  TMF_TATA_bd  7 agpsvqlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqerye 81
                 a  ++  ve+l+++i+ lE E  + ++++++l++    +++e+ kl +   e k++++++++  ++ e lq+r++
   KKY14974.1 19 ADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKAEAGSSSHHATQNETLQRRLQ 93
                 5678899******************************************************99999999999965 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.29
  TMF_TATA_bd  17 lsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlLellGeksEeveELraDva 102
                   + ++r+ ++   +++++++ le+ rd+                         e+++ee+ ++y                L+++++
   KKY14974.1 109 TNEKLRQTDVKAGHYERKVQALESARDQW------------------------ESKYEEMAKKYAD--------------LQKELQ 156
                  22333333333333333333333333333........................3333333333333..............333333 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   6.6      0.01       2.2     116     184 ..      10      71 ..       2      80 .. 0.55
   2 ?   12.6   7.9   0.00041      0.09     100     175 ..      88     163 ..      80     165 .] 0.82

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.01
      DUF724 116 kkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeledveqeFeav 184
                 kk+         l  e de++ k+ el+ + ++l +++ +++++i +l + +  le e+e+ e+  ++ 
  KKY14974.1  10 KKMNA-------LRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEA 71 
                 33333.......344455555555555555555555555566666666666655555555555544443 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00041
      DUF724 100 lkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeele 175
                 l+ + + l++e ++++k ++e +++ r+ + +  + e+k++ le  +++  +k e+++k+ a+l++e ++le+++ 
  KKY14974.1  88 LQRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELEVSMG 163
                 5666677788888889999999999999999999999999999999999999999999999999999888888765 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  30.4      0.29        63      33     150 ..      34     158 ..       4     164 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.29
  Jnk-SapK_ap_N  33 kvLElLeslasrneeeeae..leelreeleqLeteyerekelrkrae...........eeleeiedqweeerkelqekveqleeenrelelkakna 115
                    k+LE+ e+l ++++  + +    +l++e+e+Le+  ++ k+     e           e+l++  + +e+e++e ++ + +++e+ r+ ++ka  +
     KKY14974.1  34 KTLEQ-ENLQKEQDITSLThrNGLLEAEVEKLESGIKEAKA-----EagssshhatqnETLQRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGHY 123
                    44444.33333333322221134455555555554444443.....033334677777888888888899999999999999999999******** PP

  Jnk-SapK_ap_N 116 adqlsrleekeaelkkeysklheretellkklkel 150
                    + ++++le+  ++++++y++  +++ +l k+l+el
     KKY14974.1 124 ERKVQALESARDQWESKYEEMAKKYADLQKELQEL 158
                    *************************9999999886 PP

>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   5.0   0.00028     0.061     183     327 ..      13     157 ..       5     162 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00028
                      SSEETTEEGGGT--S-HHHHHHHTT-EEEEETTTT-HHHHHHHHHHHHH-TTS-EEEEEE--TTTTSTT.TTTSGGGTSS---HHHHHHHHHHT CS
  Transketolase_N 183 nkisidGeteisftedvakrfeaygWhvievedgedveaikaaieeakaekdkPsliklrtviGygspa.kagtedvhGapLgedevaalkkkl 275
                      n + i+ + +++  e+ +++ ++ + + +++e++    + ++ + ea  ek    + + +   G+ s   +++++      L ede +++ k+l
       KKY14974.1  13 NALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKAEAGSSSHHaTQNETLQRRLQLLEDEAEEADKTL 106
                      788899999999999999999999999998877777777789999*****99999999******999541445555667788999999999999 PP

                      TS-TT-TS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH CS
  Transketolase_N 276 GfdpeksfevpeevydaykekvaegakaeeeWeekfaaykkkapeeaaeler 327
                          +++    +  + +y++kv+  ++a+++We+k+++ +kk++++++el++
       KKY14974.1 107 RET-NEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQE 157
                      766.78877666667799999999*************************986 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  17.3     0.016       3.5      35     116 ..       7      88 ..       1     102 [. 0.84
   2 ?    9.8   5.9    0.0034      0.74       3      62 ..     104     163 ..     101     165 .] 0.91

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.016
  CENP-F_leu_zip  35 mseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqe 116
                      ++++ +++ +ea++++a+ve+l+++i++l++e  + e+d+++l+  +  Le e++k  + ++e ++   s ++   ++E  
      KKY14974.1   7 LIQKKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKAEAGSSSHHATQNETL 88 
                     5788999999***********************************************9999999888777766666666654 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0034
  CENP-F_leu_zip   3 kkklhvlekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeie 62 
                     k  +++ ekL+++  ka + + kv++Le+   + e++ e++     + ++e+++l+  + 
      KKY14974.1 104 KTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELEVSMG 163
                     5667899**************************************99999**99998765 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  12.0     0.037         8      38      97 ..      18      74 ..       3      77 .. 0.79
   2 ?   14.8  21.6   0.00014     0.031      19     125 ..      55     161 ..      47     164 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.037
      APG6_N 38 ekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeee 97
                e   +++++ ++eel+ ++++le+e  ++++ +  l + +  leae+++le+  ++ ++e
  KKY14974.1 18 E---ADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKAE 74
                2...22246799999999999999999999999999999999999999999988877765 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 0.00014
      APG6_N  19 eqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlellelee 117
                   +e+e +++e+  k+ k+e+ +++++ ++ e l+++l+ le+e ee+ + L+e+ ++ ++ + +   +e++ +ale   ++  ++y e + + ++l++
  KKY14974.1  55 GLLEAEVEKLESGIKEAKAEAGSSSHHATQNETLQRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQK 153
                 5679999999**********999999************************************************************************* PP

      APG6_N 118 eldsleaq 125
                 el+ le++
  KKY14974.1 154 ELQELEVS 161
                 *****986 PP

>> Striatin  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  15.5      0.01       2.2      15     125 ..      16     121 ..      11     132 .. 0.70
   2 ?    9.7   0.9    0.0056       1.2      16      44 ..     130     158 ..     127     162 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.01
    Striatin  15 rherdRneweiEraEmkarIakLegerrgaenlkkdlvrrikmLEyalkqerakylklkegtsaakenkkkekeeeeaeeeekseeeskskekksakes 113
                 r e d n+ ++E  E++a+I  Le e+ ++e+  ++l  r  +LE ++++ ++  ++     ++a +++++++++e+ +++ +  e++ ++++k+++e+
  KKY14974.1  16 RIEADENQAKVE--ELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEA---KAEAGSSSHHATQNETLQRRLQLLEDEAEEADKTLRET 109
                 89999*****99..**********************************9998763333...22233333344444444445555566666667777776 PP

    Striatin 114 lkkseaeeeses 125
                 ++k ++++ ++ 
  KKY14974.1 110 NEKLRQTDVKAG 121
                 666544444444 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0056
    Striatin  16 herdRneweiEraEmkarIakLegerrga 44 
                 +e +R +we    Em ++ a L+ e ++ 
  KKY14974.1 130 LESARDQWESKYEEMAKKYADLQKELQEL 158
                 6999********************98765 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5  22.8   0.00068      0.15      39     181 ..      11     153 ..       5     163 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00068
        Fez1  39 qlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe.aeeleelkre 136
                 ++  lr + +e++++++el++++++ ++e+ + e+++   ++++ ll+ +vekle+ +ke + e+ ++s++++++++ +++ +  ++e +e+ ++l+++
  KKY14974.1  11 KMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKAEAGSSSHHATQNETLQRRLQLLEDEaEEADKTLRET 109
                 556677778888888999999998888888888899999999999999999999999999999888877665554433333333333323444555555 PP

        Fez1 137 verlraeLkeerqkkeeqassFeqERrtWqeeKekVirYqkqLQl 181
                  e+lr+    +  + e+++++ e+ R +W++  e   +  ++LQ 
  KKY14974.1 110 NEKLRQT-DVKAGHYERKVQALESARDQWESKYEEMAKKYADLQK 153
                 5666543.5556677999999********9988877654444443 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  12.8      0.04       8.8      10      76 ..       8      74 ..       2      86 .. 0.82
   2 ?   11.7  15.9   0.00077      0.17       6      84 ..      84     162 ..      79     165 .] 0.94

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.04
         ERM 10 leerLkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeee 76
                +++++  l+ ea+++q++ +e + +++ L++++ + e++   L++++  +e+e ++l+   ++ ++e
  KKY14974.1  8 IQKKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKAE 74
                6889999999999999999999999999999999999999999999999999999998765555544 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00077
         ERM   6 ekreleerLkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerkl 84 
                 +++ l++rL+ l++eae+a + Lre +e+ ++ + ka   e++ + Le  + + e + ++++++ ++ ++e ++le  +
  KKY14974.1  84 QNETLQRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELEVSM 162
                 6789*********************************************************************999765 PP

>> HAP1_N  HAP1 N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   6.8    0.0092         2     157     203 ..      18      64 ..       4      70 .. 0.82
   2 ?    7.4  16.0    0.0098       2.1     149     238 ..      69     157 ..      57     164 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0092
      HAP1_N 157 eslqklvqldlLqeklreLeeeNekLreeasqLktetdtlEekEqqL 203
                 e  ++  +++ Lq k+++Le+eN +  ++ ++L++    lE++ ++L
  KKY14974.1  18 EADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKL 64 
                 456678899***********************999888888776665 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0098
      HAP1_N 149 elreeesleslqklvqldlLqeklreLeee....NekLreeasqLktetdtlEekEqqLvldcveqlseanqqiaelseelarkleelerqqee 238
                 ++ + e  +s+++  q ++Lq++l+ Le+e     ++Lre  ++L++   +    E++     v+ l++a+ q ++  ee+a+k  +l++  +e
  KKY14974.1  69 KEAKAEAGSSSHHATQNETLQRRLQLLEDEaeeaDKTLRETNEKLRQTDVKAGHYERK-----VQALESARDQWESKYEEMAKKYADLQKELQE 157
                 23455666899*****************9933334679*9999998887888888876.....8999999999999999999999988766555 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.6       0.2        44      37      63 ..       7      33 ..       5      34 .. 0.87
   2 ?    7.3   6.8     0.023       4.9      25      59 ..      23      64 ..      21      77 .. 0.71
   3 ?    4.1   2.9      0.23        51      29      60 ..      86     114 ..      81     118 .. 0.65
   4 ?    8.0   0.7     0.014         3      32      63 ..     124     155 ..     121     159 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.2
                HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 37 aLekeNksLkseleelkkevekLkskv 63
                 ++k++ +L+ e++e + +ve+L+ k+
  KKY14974.1  7 LIQKKMNALRIEADENQAKVEELQAKI 33
                5789999**************998876 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.023
                HHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHH CS
      bZIP_1 25 qaeieeLerrvkaLekeN.......ksLkseleelkkevekL 59
                qa++eeL+ + k+Le+eN       +sL  +++ l+ evekL
  KKY14974.1 23 QAKVEELQAKIKTLEQENlqkeqdiTSLTHRNGLLEAEVEKL 64
                8999**************333333334555555555555555 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  29 eeLerrvkaLekeNksLkseleelkkevekLk 60 
                 e L+rr + Le e +   +  ++l++++ekL+
  KKY14974.1  86 ETLQRRLQLLEDEAE---EADKTLRETNEKLR 114
                 678888888888877...44445555555555 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  32 errvkaLekeNksLkseleelkkevekLkskv 63 
                 er+v+aLe+   +  s+ ee++k+++ L++++
  KKY14974.1 124 ERKVQALESARDQWESKYEEMAKKYADLQKEL 155
                 79999999999999999999999999999876 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  14.8     0.007       1.5     124     224 ..       8     115 ..       1     120 [. 0.72
   2 ?    8.4   5.3    0.0055       1.2     121     165 ..     107     157 ..     100     164 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.007
     DUF4407 124 keqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk.........gtgttgvaGkgpaakekkaqldaaqaelaelkakldatarla 213
                  ++  +al+ e +e++a++++lqa+i+++e++  +++++ ++ ++ +           +g++  + +  +  +  +q++++q++l+ l+++  a+++ +
  KKY14974.1   8 IQKKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGlleaeveklESGIKEAKAEAGSSSHHATQNETLQRRLQLLEDE--AEEADK 104
                 4444445666777777777777777777777777777777777666658888888888888888888888888999999999999999999..777777 PP

     DUF4407 214 alraelaelea 224
                 +lr++ ++l++
  KKY14974.1 105 TLRETNEKLRQ 115
                 77777777655 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0055
     DUF4407 121 kelkeqlaaa......ltaelaeleaqiaalqaeidaaearldalraeaqk 165
                 +e +e+l+++      ++ ++++le+ ++++++++++  +++++l++e+q+
  KKY14974.1 107 RETNEKLRQTdvkaghYERKVQALESARDQWESKYEEMAKKYADLQKELQE 157
                 3333333333444556********************************994 PP

>> Cortex-I_coil  Cortexillin I, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   6.1      0.24        53      19      64 ..       6      51 ..       1      66 [. 0.69
   2 ?   11.4   5.3    0.0013      0.29      24      70 ..      70     116 ..      54     131 .. 0.83
   3 ?    5.2   0.2      0.11        25       4      31 ..     134     161 ..     131     165 .] 0.83

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.24
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cortex-I_coil 19 aglenslesekvsreelikqkdelesllasleseaaerekrlrele 64
                   a +++ +++ ++  +e   + +el+  +++le+e+ ++e+ +  l 
     KKY14974.1  6 ALIQKKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLT 51
                   5566666777777777777778888888888888888888887765 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.0013
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cortex-I_coil  24 slesekvsreelikqkdelesllasleseaaerekrlreleakldea 70 
                      ++e  s  + + q + l+  l++le+ea+e +k lre + kl ++
     KKY14974.1  70 EAKAEAGSSSHHATQNETLQRRLQLLEDEAEEADKTLRETNEKLRQT 116
                    4567778899999******************************9765 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.11
                    XXXXXXXXXXHHHHHHHHHHHHHHHHHH CS
  Cortex-I_coil   4 kerleasknelanklaglenslesekvs 31 
                    +++ e+  +e+a+k a l++ l+   vs
     KKY14974.1 134 RDQWESKYEEMAKKYADLQKELQELEVS 161
                    678899999**********999877666 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   2.8     0.046        10       5      35 ..       8      38 ..       7      50 .. 0.82
   2 ?    3.6   5.9      0.39        86       1      38 [.      32      69 ..      16      74 .. 0.75
   3 ?    4.5   2.8      0.22        48       5      27 ..      57      79 ..      53     116 .. 0.78
   4 ?    6.0   0.1     0.071        16       6      40 ..     124     158 ..     119     165 .] 0.66

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.046
   FlaC_arch  5 lEnklsklsteletvkkeneelsksveelke 35
                +++k++ l +e +  +++ eel+ ++++l++
  KKY14974.1  8 IQKKMNALRIEADENQAKVEELQAKIKTLEQ 38
                6788999999999999999999999988887 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.39
   FlaC_arch  1 ridelEnklsklsteletvkkeneelsksveelkenVk 38
                +i++lE++  + +  ++++   n  l+ +ve+l+  +k
  KKY14974.1 32 KIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIK 69
                56666666666666888888888888888888887776 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.22
   FlaC_arch  5 lEnklsklsteletvkkeneels 27
                lE +++kl++ ++ +k+e  + s
  KKY14974.1 57 LEAEVEKLESGIKEAKAEAGSSS 79
                89999999999999998865444 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.071
   FlaC_arch   6 EnklsklsteletvkkeneelsksveelkenVkdl 40 
                 E k++ l++  +  +++ ee+ k+  +l+++ ++l
  KKY14974.1 124 ERKVQALESARDQWESKYEEMAKKYADLQKELQEL 158
                 66667777766666666677666666666666554 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  20.5     0.031       6.7      63     169 ..      12     110 ..       1     119 [. 0.69
   2 ?    8.9  16.0    0.0039      0.84      40     131 ..      69     157 ..      57     163 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.031
         GAS  63 LkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevqqktglknllLekklkalqeelEkk 161
                 +++++ e +e +   ++ e+ ++++k l++++ + e+ +++l++ +  le ++ek+e+ ++e +++  ++ +++ q     n  L+++l+ l++e E++
  KKY14974.1  12 MNALRIEADENQ---AKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKAEAGSSSHHATQ-----NETLQRRLQLLEDEAEEA 102
                 444444444433...3444445567777777778888888888888888888888888888888887777666655.....677899999999999999 PP

         GAS 162 eaqleevl 169
                 ++ l+e+ 
  KKY14974.1 103 DKTLRETN 110
                 99999875 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0039
         GAS  40 kkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfea 131
                 k++++     s+++++n+ l+  L+ +e e ee  k l++ ++   +l+++  +  + e+++++l+   ++ e ++e++ k++ +l+k+ ++
  KKY14974.1  69 KEAKAEAGSSSHHATQNETLQRRLQLLEDEAEEADKTLRETNE---KLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQE 157
                 445555566788999******************9999998877...7888888888888888888888888888888888888888887665 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2  10.5   0.00031     0.068      57     117 ..      10      73 ..       2      76 .. 0.89
   2 ?    1.2   9.4       1.6   3.6e+02      64      97 ..      83     116 ..      68     135 .. 0.63
   3 ?    3.2   8.2      0.41        89      81     116 ..     124     159 ..     107     162 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00031
  TPR_MLP1_2  57 kelqalreelnelkaeiaelkaeaesakaeleesee...sweeqkeelekelselekriedlne 117
                 k+++alr e++e +a+++el+a+ +++++e+ ++e+   s++ +   le e+++le+ i++ ++
  KKY14974.1  10 KKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQditSLTHRNGLLEAEVEKLESGIKEAKA 73 
                 799*****************************99984446778999*************99876 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 1.6
  TPR_MLP1_2  64 eelnelkaeiaelkaeaesakaeleeseesweeq 97 
                 ++ ++l+ +++ l++eae+a ++l e  e++ ++
  KKY14974.1  83 TQNETLQRRLQLLEDEAEEADKTLRETNEKLRQT 116
                 5667777777777777777777777777666554 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.41
  TPR_MLP1_2  81 esakaeleeseesweeqkeelekelselekriedln 116
                 e+  ++le ++ +we++ ee+ k+ ++l+k +++l+
  KKY14974.1 124 ERKVQALESARDQWESKYEEMAKKYADLQKELQELE 159
                 445566777777777777777777777777777775 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  19.5    0.0054       1.2      23     160 ..      22     163 ..      20     165 .] 0.80

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0054
                 THHHHHHHHHHHHHHHHHHHHHTTTSSS-S---TTTHHHHHHHHHHHHHHHHHHTHHHHHT-GGGT--S-SH.....HHHHTTHHHHHHHHHHHHHHHH CS
        EzrA  23 ikkeideLeerkneiknlpvqeelskvkklnltgeseekfeewkkkwdeiktkklpeieellfeaeelldky.....kfkkakkklaeleeeldeveek 116
                 ++ +++eL+++ +++++ ++q+e +  +  + +g +e ++e++++  +e k  +    +++ ++ e l ++      +  +a k+l+e++e+l +++ k
  KKY14974.1  22 NQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKA-EAGSSSHHATQNETLQRRLqlledEAEEADKTLRETNEKLRQTDVK 119
                 6789999999999999999999988888889999999999999999999988.4444444444444444444001116678999999999999999999 PP

                 HHHHHHHHTHHHHTTTTTHHHHHHHHHHHHHHHHT--TTTTHHH CS
        EzrA 117 ikkileelkelteseeknreeieklkekYrelrkkllanrfsyg 160
                 + +   +++ l +   + ++++e++ +kY +l+k+l++ + s g
  KKY14974.1 120 AGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELEVSMG 163
                 99999999999999999999999999999999999998766655 PP

>> Cep57_MT_bd  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   2.5       1.3   2.9e+02      19      43 ..      14      38 ..       5      68 .. 0.70
   2 ?   13.0   5.1    0.0005      0.11       4      52 ..      79     127 ..      76     143 .. 0.85
   3 ?    6.4   0.7     0.056        12      24      46 ..     141     163 ..     127     165 .] 0.74

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 1.3
  Cep57_MT_bd 19 eLedEfehlklelqelaaqynaldp 43
                 +L  E ++ +++ +el+a+++ l++
   KKY14974.1 14 ALRIEADENQAKVEELQAKIKTLEQ 38
                 5555666666666666666666653 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.0005
  Cep57_MT_bd   4 rpsqspkeaLaevlkeLedEfehlklelqelaaqynaldpslgkrkRkd 52 
                  +  ++ +e+L + l+ LedE e+  + l e +++++++d  +g+ +Rk 
   KKY14974.1  79 SHHATQNETLQRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGHYERKV 127
                  66678899*********************************99999986 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.056
  Cep57_MT_bd  24 fehlklelqelaaqynaldpslg 46 
                   e++ +++++l++++++l+ s+g
   KKY14974.1 141 YEEMAKKYADLQKELQELEVSMG 163
                  57788888888888888887776 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   3.0     0.074        16      10      33 ..      20      44 ..       9      51 .. 0.84
   2 ?    9.8   2.4    0.0028      0.61      13      73 ..      58     120 ..      46     128 .. 0.88
   3 ?    7.5   1.1     0.014         3       3      39 ..     128     164 ..     126     165 .] 0.91

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.074
                HHHHHHHHHHHHHHHHHH.HTT-HH CS
        RPN7 10 kknekeleeLdaelkdak.enlgke 33
                ++n++++eeL+a++k  + enl ke
  KKY14974.1 20 DENQAKVEELQAKIKTLEqENLQKE 44
                799*************997777776 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0028
                 HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCT-..HHHHHHHHHTCCCC--SHHHHH CS
        RPN7  13 ekeleeLdaelkdakenlgkeeirrakldlaehYlkigd..leeAlkaysrireyctslkhki 73 
                 e+e+e+L++ +k+ak + g+++  +++++  ++ l+  +   eeA k+++++ e++ +++ k+
  KKY14974.1  58 EAEVEKLESGIKEAKAEAGSSSHHATQNETLQRRLQLLEdeAEEADKTLRETNEKLRQTDVKA 120
                 78******************************999998533899***********99999876 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH CS
        RPN7   3 kwveelrkknekeleeLdaelkdakenlgkeeirrak 39 
                 + +e+ r+++e++ ee+ +++ d +++l + e+ +++
  KKY14974.1 128 QALESARDQWESKYEEMAKKYADLQKELQELEVSMGN 164
                 668999**************************99875 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   7.2     0.066        14     174     244 ..       6      72 ..       2      82 .. 0.73
   2 ?   11.9   8.3   0.00033     0.072     168     240 ..      80     155 ..      76     163 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.066
  Fmp27_WPPW 174 elleeRleeleeqiekleekleelelksekedeelkeeieelekeikelkeklefletlledlkeseesse 244
                  l+++ ++ l+ + ++++ k+eel+ k ++    l++e  + e++i +l ++  +le+ +e+l++  ++++
  KKY14974.1   6 ALIQKKMNALRIEADENQAKVEELQAKIKT----LEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAK 72 
                 699999******************999999....6666666677777777777777777777776665332 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00033
  Fmp27_WPPW 168 pervqkelleeRleeleeqiekleekleelelkseke...deelkeeieelekeikelkeklefletlledlkese 240
                  +++q e l++Rl+ le++ e+ +++l+e ++k +++     ++++++++le+  ++ ++k+e + + + dl+++ 
  KKY14974.1  80 HHATQNETLQRRLQLLEDEAEEADKTLRETNEKLRQTdvkAGHYERKVQALESARDQWESKYEEMAKKYADLQKEL 155
                 5789******************************997676555555555555555555555555555555555544 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4  14.1       0.5   1.1e+02     110     166 ..      17      73 ..       3      93 .. 0.53
   2 ?    8.1  20.6     0.009         2      66     183 ..      44     159 ..      42     163 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.5
  Lebercilin 110 LsedknLaereeLqkkLeeleakleekeekikeLerkleleeksfrrqlaaekkktk 166
                 +  d n a  eeLq k+++le++  +ke++i +L ++  l+e + ++     k+ + 
  KKY14974.1  17 IEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKA 73 
                 344555566677777777777777777777777777666666665543333333333 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.009
  Lebercilin  66 neEvrvlrerlRksqekerelekklkekeaellrlkdklkklkkLsedknLa..ereeLqkkLeeleakleekeekikeLerkleleeksfrrqlaaek 162
                 ++++  l  r   +++++++le+ +ke+ ae  + ++  ++ + L +  +L+  e ee  k L+e+++kl +++ k    erk++ +e++++    +++
  KKY14974.1  44 EQDITSLTHRNGLLEAEVEKLESGIKEAKAEAGSSSHHATQNETLQRRLQLLedEAEEADKTLRETNEKLRQTDVKAGHYERKVQALESARD----QWE 138
                 56677777777777888888888888888888888888888888888888862246788888888888888888888888888888887765....467 PP

  Lebercilin 163 kktkeaqeevkalqeeierlk 183
                 +k  e+ ++ ++lq+e+++l+
  KKY14974.1 139 SKYEEMAKKYADLQKELQELE 159
                 788888888888888888876 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.6     0.039       8.6      23      55 ..       8      40 ..       2      54 .. 0.83
   2 ?    7.2   4.5     0.024       5.4       2      57 ..      57     115 ..      56     119 .. 0.88
   3 ?    7.1   0.4     0.025       5.6       3      37 ..     124     158 ..     122     162 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.039
  TolA_bind_tri 23 lqqqlealqqelreLRGqiEelqyqleqleerQ 55
                   +q++++al+ e +e + ++Eelq ++++le+  
     KKY14974.1  8 IQKKMNALRIEADENQAKVEELQAKIKTLEQEN 40
                   6999999999999999*******9999999864 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.024
  TolA_bind_tri   2 ledrvarLErilears...qlllelqqqlealqqelreLRGqiEelqyqleqleerQrd 57 
                    le+ v++LE  ++  +    +     +q e+lq+ l+ L  + Ee    l++++e+ r+
     KKY14974.1  57 LEAEVEKLESGIKEAKaeaGSSSHHATQNETLQRRLQLLEDEAEEADKTLRETNEKLRQ 115
                    688999999888776566688889999****************************9997 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.025
  TolA_bind_tri   3 edrvarLErilearsqlllelqqqlealqqelreL 37 
                    e +v+ LE + ++ ++   e+ ++  +lq+el+eL
     KKY14974.1 124 ERKVQALESARDQWESKYEEMAKKYADLQKELQEL 158
                    789999***999999999***************99 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   8.1    0.0099       2.2      19      60 ..      11      52 ..       4      53 .. 0.83
   2 ?    8.5   1.3     0.012       2.6       7      31 ..     135     159 ..     134     162 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0099
        ZapB 19 titlLqmeieeLkeeneelkeenreleeeneqlkeereawqe 60
                ++ +L+ e +e ++++eel+ +++ le+en q +++ ++++ 
  KKY14974.1 11 KMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTH 52
                578999999999999999999999999999999988776665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.012
        ZapB   7 eqLEskiqkaidtitlLqmeieeLk 31 
                 +q Esk++++  +++ Lq+e++eL+
  KKY14974.1 135 DQWESKYEEMAKKYADLQKELQELE 159
                 6779*******************97 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.1     0.015       3.4      47      72 ..      22      47 ..       9      51 .. 0.84
   2 ?    5.3   8.1     0.073        16      12      74 ..      44     108 ..      42     121 .. 0.84
   3 ?    4.1   3.9      0.16        36       9      49 ..     112     156 ..     100     164 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.015
  Phage_GP20 47 kakdneeLqkqieelqaknkkakaey 72
                ++  +eeLq++i++l+++n +++++ 
  KKY14974.1 22 NQAKVEELQAKIKTLEQENLQKEQDI 47
                5578999**********999999886 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.073
  Phage_GP20  12 gkdit..kakldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyea 74 
                 ++dit    +   +e+e+++l++ +k++  +       a  ne+Lq+ ++ l+ ++++a+++  +
  KKY14974.1  44 EQDITslTHRNGLLEAEVEKLESGIKEAKAEAGSSSHHATQNETLQRRLQLLEDEAEEADKTLRE 108
                 567777777788899*******************************************9998654 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.16
  Phage_GP20   9 aengkdit....kakldeveeerdtlkeqlkdrdkqLedLkkkak 49 
                 ++ ++d+     + k++ +e++rd+++++ ++  k+  dL+k+ +
  KKY14974.1 112 KLRQTDVKaghyERKVQALESARDQWESKYEEMAKKYADLQKELQ 156
                 455566644556778888888888888888888888877777644 PP

>> PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  23.6      0.19        42      18     151 ..      11     146 ..       7     155 .. 0.86
   2 ?    4.5   1.3       0.1        23      29      99 ..     137     157 ..     123     165 .] 0.39

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.19
  PI3K_P85_iSH2  18 klrevskqlqekskeydqlkeeynkiseeiqlkrqaleaFneaikmFeeqiklqekfskeaq..ehEieklqenleqlksrlkelhsskekLeedl 111
                    k + +  +  e++ + ++l+ + + +++e   k q +   ++ + ++e +++  e+ +kea+      ++  +++e l++rl+ l+++ e+ ++ l
     KKY14974.1  11 KMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKaeAGSSSHHATQNETLQRRLQLLEDEAEEADKTL 106
                    555666677788899999*******************************************62134455888999********************* PP

  PI3K_P85_iSH2 112 kqqkeeereleReinalkpellqLqkrkdkylewLktkgv 151
                    +++ e+ r+++ +       ++ L+  +d+   + ++   
     KKY14974.1 107 RETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAK 146
                    *****************************98766665555 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.1
  PI3K_P85_iSH2  29 kskeydqlkeeynkiseeiqlkrqaleaFneaikmFeeqiklqekfskeaqehEieklqenleqlksrlke 99 
                     + +y                                                  e++ + +++l++ l+e
     KKY14974.1 137 WESKY--------------------------------------------------EEMAKKYADLQKELQE 157
                    22223..................................................3333333333333333 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   7.0      0.35        77      29      89 ..       5      69 ..       1      74 [. 0.52
   2 ?    5.0   3.1      0.14        30      26      60 ..      82     116 ..      68     136 .. 0.59
   3 ?   11.0   1.2    0.0018       0.4      21      54 ..     126     159 ..     115     165 .] 0.68

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.35
     BLOC1_2 29 Neaasekykklkdvaaslekkleklnekyeelq....pylqqidqiekqvteLeeavseLDeysk 89
                N   ++k ++l+ +a++ ++k+e+l++k ++l+    ++ q i  +  +   Le+ v++L++ +k
  KKY14974.1  5 NALIQKKMNALRIEADENQAKVEELQAKIKTLEqenlQKEQDITSLTHRNGLLEAEVEKLESGIK 69
                55555555566666666666666555554444310003344555555666666666666666555 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.14
     BLOC1_2  26 eklNeaasekykklkdvaaslekkleklnekyeel 60 
                  + Ne+ +++ + l+d+a+++ k+l ++nek  + 
  KKY14974.1  82 ATQNETLQRRLQLLEDEAEEADKTLRETNEKLRQT 116
                 56677777777777777777777776666643332 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.0018
     BLOC1_2  21 dyklLeklNeaasekykklkdvaaslekklekln 54 
                 +++ Le    + ++ky++++++ a+l+k+l++l+
  KKY14974.1 126 KVQALESARDQWESKYEEMAKKYADLQKELQELE 159
                 4555666666666677777777777777776665 PP

>> DUF3782  Protein of unknown function (DUF3782)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.6    0.0069       1.5       7      42 ..      23      58 ..      10      75 .. 0.83
   2 ?    2.3   1.3      0.84   1.8e+02       5      33 ..     101     129 ..      69     134 .. 0.64
   3 ?    5.2   0.5      0.11        24       5      32 ..     136     163 ..     125     165 .] 0.77

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0069
     DUF3782  7 eeeeeetkedleelekeieklertigaLGaRWGlvs 42
                + + ee++ +++ le+e  + e+ i++L +R Gl+ 
  KKY14974.1 23 QAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLE 58
                4458999999***********************974 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.84
     DUF3782   5 kleeeeeetkedleelekeieklertiga 33 
                 + ++  +et+e+l++ + +  ++er+++a
  KKY14974.1 101 EADKTLRETNEKLRQTDVKAGHYERKVQA 129
                 22223455555555555555555555555 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.11
     DUF3782   5 kleeeeeetkedleelekeieklertig 32 
                 ++e + ee+ ++  +l+ke+++le+ +g
  KKY14974.1 136 QWESKYEEMAKKYADLQKELQELEVSMG 163
                 5777788888888888888888888876 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  26.5    0.0075       1.6     329     478 ..       9     157 ..       4     163 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0075
      DUF812 329 eeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkkktlellpdaeeniekLqalveasaqrlvelakqWekhRvpli 427
                 ++++++l+ + +e ++k+eel+++ik+le++  q e+ ++ +   n  le+ev++ +  ++ ++   ++ +      e+ ++rl+ l+++ e++ ++l 
  KKY14974.1   9 QKKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKAEAGSSSHHATQNETLQRRLQLLEDEAEEADKTLR 107
                 567788888888888888888888888888888888888888888888888888888888888766677777777777777788888888888877776 PP

      DUF812 428 eeyrelkesksekekeaerkleeikklrekmkevaeelrqkeellkqLvae 478
                 e  ++l++  + k+  +erk++ +++ r++ +   ee+++k+  l++ ++e
  KKY14974.1 108 ETNEKLRQ-TDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQE 157
                 66666664.466777888888888888888877777777775544443333 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  26.4    0.0067       1.5     377     530 ..       8     159 ..       2     163 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0067
     DUF3584 377 vqekydrrkqkikeeleeeleklkerleaireekdrlkaaieeale..alesqlrkqleaqkeelneeekelesrlselklrldsatateEeleqieea 473
                 +q+k+++++ +++ e+++++e+l+++ + + +e+ ++ ++i +  +   l ++ +++le +++e++ e+    +++ + +++++  +  e+e    eea
  KKY14974.1   8 IQKKMNALRIEAD-ENQAKVEELQAKIKTLEQENLQKEQDITSLTHrnGLLEAEVEKLESGIKEAKAEAGSSSHHATQNETLQRRLQLLEDEA---EEA 102
                 6667777666654.5677788888887777777766666555433311444444457777777777777778888888888888888877765...578 PP

     DUF3584 474 dealekaqeelekaeaevealqaeeeqlrkkrdeadealqkaerrleqlrqaleele 530
                 d+ l++ +e+l++   +  + +++ ++l+++rd+ + ++++++++  +l+++l+ele
  KKY14974.1 103 DKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELE 159
                 999999999999999999999999999999999999999999999999999999997 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7  12.6      0.45        99      67     127 ..      10      70 ..       2      94 .. 0.53
   2 ?    7.1  15.3      0.02       4.3      23     129 ..      53     159 ..      46     164 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.45
    KASH_CCD  67 eEleelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqeenikllaekdelkkklke 127
                 + ++ l+  + e + k ++l+a+ k le+en + ++ i+sL  +n  l ae ++l++ +ke
  KKY14974.1  10 KKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKE 70 
                 3444444444444445555555555555555555555555555555555555555444444 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.02
    KASH_CCD  23 enskLkkavetaeetnakLteeieeLkkklkstQqalqkaklleeEleelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqeenikllaekdel 121
                  n  L + ve+ e   +   +e     + +     +  + +lle+E ee+ ++++e++Ek ++   ++ + e+  q L++  ++ + + + ++     l
  KKY14974.1  53 RNGLLEAEVEKLESGIKEAKAEAGSSSHHATQNETLQRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADL 151
                 444455555555555555555544444444444444445568899999999999999999999999999999999999988888888888888888888 PP

    KASH_CCD 122 kkklkeLl 129
                 +k l+eL 
  KKY14974.1 152 QKELQELE 159
                 88888885 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  11.2     0.079        17       7      88 ..      22     112 ..       8     117 .. 0.56
   2 ?    9.5   3.2    0.0024      0.53       4      60 ..     106     162 ..     103     165 .] 0.90

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.079
       TMPIT   7 lekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk.........eeeeeeveelkeelkerkkvlkevesl 88 
                  + +++el+++ k+++q+  + ++ +++++++    + ++++l+s +k+ k++++         e  +++++ l++e +e++k+l+e+++ 
  KKY14974.1  22 NQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKAEAGssshhatqnETLQRRLQLLEDEAEEADKTLRETNEK 112
                 5555666666666666666666666666666666666666666666666666544332222222333445555555555555555555554 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0024
       TMPIT   4 weelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksv 60 
                 ++e ++++++   +a +y++k++ l++  +++ ++ ++  k++ +l+++l++l+ s+
  KKY14974.1 106 LRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELEVSM 162
                 66788889999999999***********************************99875 PP

>> SOGA  Protein SOGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   1.6      0.14        31      64      92 ..      12      40 ..       2      42 .. 0.55
   2 ?    9.3   4.4     0.011       2.4      21      80 ..      45     101 ..      36     104 .. 0.86
   3 ?    8.3   9.2     0.023       5.1       3      75 ..      86     159 ..      84     164 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.14
        SOGA 64 eaelkeeLklarlqineLsgkvvkLqven 92
                 ++l+ e    + +++eL+ k++ L+ en
  KKY14974.1 12 MNALRIEADENQAKVEELQAKIKTLEQEN 40
                33344444444455667777777777776 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.011
        SOGA  21 rslseleeenkqlteeLnkyksklgeeessleeeeeassdsskeaelkeeLklarlqine 80 
                 + ++ l + n  l+ e++k+ s+ +e ++++ +   +s++++++++l+ +L+l + +++e
  KKY14974.1  45 QDITSLTHRNGLLEAEVEKLESGIKEAKAEAGS---SSHHATQNETLQRRLQLLEDEAEE 101
                 57899999**************99998876655...78888999*********9999876 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.023
        SOGA   3 aeLrrhLqfveeEaeLlrrslseleeenkqlteeLnkyksklgeeessleeeeeass.dsskeaelkeeLklar 75 
                 + L+r+Lq+ e+Eae   + l e +e+ +q   +  +y  k ++ es+ ++ e++ +  ++k a l++eL+  +
  KKY14974.1  86 ETLQRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEeMAKKYADLQKELQELE 159
                 679*******************************************9999887555505566788999998765 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   9.1     0.002      0.43      76     140 ..      11      75 ..       2      78 .. 0.84
   2 ?    2.1  20.2      0.81   1.8e+02      75     189 ..      45     158 ..      39     160 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.002
     UPF0242  76 klteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelklel 140
                 k+ +l+ + ++++ ++eelq++ + L++e  +ke+ +  l+++n  L+ + e+    ++e k e+
  KKY14974.1  11 KMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKAEA 75 
                 34444444578888***************************************999999998875 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.81
     UPF0242  75 aklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekle...aiaedfeelkleleeqLaekqellqeyqetieeqrsvlekrqd 170
                 + +t+l       +  le   e+ e   +e +a    + ++  +n+ Lq +l+   + ae+ ++ ++e +e+L++   +  +y+++++ + s  ++ + 
  KKY14974.1  45 QDITSLT----HRNGLLEAEVEKLESGIKEAKAEAGSSSHHATQNETLQRRLQlleDEAEEADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWES 139
                 3333333....222233333333333344455556667777777777777765111566688999999******************************* PP

     UPF0242 171 qieqLeskVrDlnyEiktL 189
                 + e++  k  Dl+ E++ L
  KKY14974.1 140 KYEEMAKKYADLQKELQEL 158
                 ***************9987 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   2.6      0.16        35      74     110 ..      11      50 ..       3      71 .. 0.57
   2 ?    9.8   4.3    0.0029      0.63      48     120 ..      83     161 ..      79     165 .] 0.80

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.16
    Lectin_N  74 eiqalssqggslsekvtsleaklekkqqd.l..kadhsel 110
                 +++al+ ++++ + kv+ l+ak++  +q+ l  ++d ++l
  KKY14974.1  11 KMNALRIEADENQAKVEELQAKIKTLEQEnLqkEQDITSL 50 
                 5667777777777777777776655433312112333444 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0029
    Lectin_N  48 sqnsqLqreLetLketfs...nfssstlaeiqalssqggslsekvtslea...klekkqqdlkadhselllhvkqlvkd 120
                  qn  Lqr L+ L+++ +    +  +t+ ++++ + ++g+ ++kv+ le+   + e k +++ + +++l   +++l + 
  KKY14974.1  83 TQNETLQRRLQLLEDEAEeadKTLRETNEKLRQTDVKAGHYERKVQALESardQWESKYEEMAKKYADLQKELQELEVS 161
                 7999*********97765111556788999999999*********9999833356778888999999999999998765 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   8.2    0.0023       0.5      66     141 ..       9      84 ..       2      87 .. 0.84
   2 ?    8.0  13.7    0.0061       1.3      26     144 ..      42     156 ..      41     163 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0023
       Atg14  66 kakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqiaklqdaik 141
                 ++k++ l+++  + +++++el++k+++l +e+ +k + + +l + +    ++ e+l++ ++e++++  ++  +a++
  KKY14974.1   9 QKKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKAEAGSSSHHATQ 84 
                 5688899999999999999999999999999999999999999999999999999999999998877666655555 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0061
       Atg14  26 elrerlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk...kRrsdlesl 121
                 ++ +++++l +++  l+ ++ek+++g +       ++k ++ + +   ++ + l++rlq+l+d  ++ +k ++e+ +kl++ + k     ++ + les+
  KKY14974.1  42 QKEQDITSLTHRNGLLEAEVEKLESGIK-------EAKAEAGSSSHHATQNETLQRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGhyeRKVQALESA 133
                 78999********************999.......8888888888999999999999999999999999999999999999999888887777788888 PP

       Atg14 122 qneleerrkkqiaklqdaikrie 144
                 +++ e++ ++  +k+ d  k+ +
  KKY14974.1 134 RDQWESKYEEMAKKYADLQKELQ 156
                 88888777766666666555554 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   9.6     0.072        16     333     411 ..       6      78 ..       1      86 [. 0.82
   2 ?    9.3   8.1    0.0018      0.39     332     411 ..      85     158 ..      78     165 .] 0.70

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.072
        FapA 333 pelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeelesk 411
                   +++k+++l+ e  e ++++e+l++kik l++++ +      k++++ +l++    l+ e+e+le  +ke k+e  s+
  KKY14974.1   6 ALIQKKMNALRIEADENQAKVEELQAKIKTLEQENLQ------KEQDITSLTHRNGLLEAEVEKLESGIKEAKAEAGSS 78 
                 5567888999999999999999999999999995444......569999999999999999999999999999998887 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0018
        FapA 332 epelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeelesk 411
                 + +l+++l+ le+e ee  + l++ ++k+++ + ++  +      + +++ l+ ++ + ++++ee+ +++++l++el++ 
  KKY14974.1  85 NETLQRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGHY------ERKVQALESARDQWESKYEEMAKKYADLQKELQEL 158
                 355666666666666666666666666666666533344......47889999999999999999999999999999987 PP

>> VGPC1_C  C-terminal membrane-localisation domain of ion-channel, VCN1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.8    0.0032      0.69      13      44 ..      29      57 ..      23      60 .. 0.83
   2 ?    0.8   0.1       2.2   4.8e+02      12      26 ..      56      70 ..      50      75 .. 0.76
   3 ?    1.3   0.2       1.6   3.4e+02      14      30 ..     124     140 ..     110     161 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0032
     VGPC1_C 13 LaaKvqqLefscsEKeqeierLnkLlkqhGlL 44
                L aK++ Le     Keq i  L      +GlL
  KKY14974.1 29 LQAKIKTLEQENLQKEQDITSL---THRNGLL 57
                99****************9655...4566666 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 2.2
     VGPC1_C 12 qLaaKvqqLefscsE 26
                 L a v++Le+   E
  KKY14974.1 56 LLEAEVEKLESGIKE 70
                588999999997766 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 1.6
     VGPC1_C  14 aaKvqqLefscsEKeqe 30 
                   Kvq Le+     e+ 
  KKY14974.1 124 ERKVQALESARDQWESK 140
                 56999999976655555 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  21.0       0.1        23     160     296 ..      23     159 ..       9     162 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.1
       FAM76 160 kkskekskekkaskkkskkhkkrssrlevskleeek.....laeekesnetskksldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkitelk 253
                 +     + e+ + k k+ ++++ ++++++++l++++      +e+ es  +++k+   +ss h  + + L+ +++ l+ + e+ d++l e + k+ +  
  KKY14974.1  23 Q----AKVEELQAKIKTLEQENLQKEQDITSLTHRNglleaEVEKLESGIKEAKAEAGSSSHHATQNETLQRRLQLLEDEAEEADKTLRETNEKLRQTD 117
                 1....1223334444445555555566666666333444322222222222223444556778888999**************************9999 PP

       FAM76 254 aellekekelreklkelekeakekieklekkirellkevaels 296
                 ++  + e++++  l++ + + ++k e++ kk ++l+ke+ el+
  KKY14974.1 118 VKAGHYERKVQA-LESARDQWESKYEEMAKKYADLQKELQELE 159
                 999999998865.88999999****************998875 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   7.0     0.019       4.2      77     114 ..       3      40 ..       1      46 [. 0.89
   2 ?    1.1   0.3       1.6   3.6e+02      83     106 ..      51      74 ..      40      87 .. 0.61
   3 ?    4.0   2.2      0.21        46      80     110 ..      86     116 ..      78     122 .. 0.59
   4 ?   10.2   1.7    0.0025      0.55      82     117 ..     123     158 ..     120     161 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.019
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  77 eAiellkkkleelekqlekleeeleklkdqittleanl 114
                  A +l++kk++ l+   ++ ++++e+l+++i+tle++ 
  KKY14974.1   3 AANALIQKKMNALRIEADENQAKVEELQAKIKTLEQEN 40 
                 7999******************************9874 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  83 kkkleelekqlekleeeleklkdq 106
                   +   le+ +ekle  ++++k++
  KKY14974.1  51 THRNGLLEAEVEKLESGIKEAKAE 74 
                 444455555555555555555544 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  80 ellkkkleelekqlekleeeleklkdqittl 110
                 e+l+++l+ le+  e+  + l++  +++ ++
  KKY14974.1  86 ETLQRRLQLLEDEAEEADKTLRETNEKLRQT 116
                 4555555555555555555555555555544 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.0025
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  82 lkkkleelekqlekleeeleklkdqittleanlaql 117
                 +++k++ le+++++ e + e+ ++++  l+++l++l
  KKY14974.1 123 YERKVQALESARDQWESKYEEMAKKYADLQKELQEL 158
                 589*******************************97 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   1.0      0.55   1.2e+02       6      32 ..      12      38 ..       3      46 .. 0.55
   2 ?    0.6   7.6       3.2     7e+02      45      85 ..      76     117 ..      23     118 .. 0.80
   3 ?    9.0   0.4    0.0076       1.7      48      79 ..     129     160 ..     125     164 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.55
                HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  6 peelrqaaarfqkqaeeledelqrlka 32
                 ++lr  a + q++ eel++ +++l++
  KKY14974.1 12 MNALRIEADENQAKVEELQAKIKTLEQ 38
                334444444445555555555554444 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 3.2
                 HCHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  45 aadafqaefe.ewkqaaqklvdaLeeisealkqaanafedaD 85 
                  +++ +a+++  +++ +q l d+ ee  ++l++++++++++D
  KKY14974.1  76 GSSSHHATQNeTLQRRLQLLEDEAEEADKTLRETNEKLRQTD 117
                 4455566666689999999999999**************999 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0076
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  48 afqaefeewkqaaqklvdaLeeisealkqaan 79 
                 a +++ ++w  + +++++++++++++l++   
  KKY14974.1 129 ALESARDQWESKYEEMAKKYADLQKELQELEV 160
                 55666678888888888888888888877655 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   6.8     0.019       4.2      89     140 ..       8      59 ..       3      76 .. 0.75
   2 ?    6.4  10.5     0.032       6.9      45     118 ..      86     159 ..      81     164 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.019
     DUF4201  89 leselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggllrv 140
                 +++++++l+ e +e +++ ++l++++  +++e+ + +++ + l  ++gll++
  KKY14974.1   8 IQKKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEA 59 
                 6777888888888888888888888888888888888888888888887764 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.032
     DUF4201  45 eqlqienqalnkkIeernkeLkrlkkkttktvhalthlkeklhmleselselkkelkekeerlaklrkelykvk 118
                 e+lq+  q l+++ ee +k L +  +k  +t  +  h+  k ++les   + +++++e+ ++ a+l+kel++++
  KKY14974.1  86 ETLQRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELE 159
                 78899999999999999999999999999999999999999999999999999999999999999999998876 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  12.7     0.013       2.8      15      73 ..      13      71 ..       8      74 .. 0.80
   2 ?   -1.1   9.4       8.8   1.9e+03      28      72 ..      61     108 ..      57     116 .. 0.65
   3 ?   -0.3  12.6       5.1   1.1e+03      19      70 ..      97     148 ..      78     165 .] 0.56

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.013
  TMF_DNA_bd 15 aqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlkea 73
                ++L+ E  + ++k  +l ++ik L ++n + e++i++l+ ++  le e+e+le+  kea
  KKY14974.1 13 NALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEA 71
                56777777777888888888999999999999999999999999999999998877776 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 8.8
  TMF_DNA_bd  28 elklnntikkLrkknkele...keikelkkkleklekeleeleerlke 72 
                   kl+  ik+ ++++  +    ++ ++l+++l+ le e ee  + l+e
  KKY14974.1  61 VEKLESGIKEAKAEAGSSShhaTQNETLQRRLQLLEDEAEEADKTLRE 108
                 456666677777777666655566666677777777777777776665 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 5.1
  TMF_DNA_bd  19 eEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerl 70 
                  E e+  k+ ++ n+++ + + k+ + e +++ l++  ++ e++ ee+ +++
  KKY14974.1  97 DEAEEADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKY 148
                 5555555555555555555555555555555555544444444443333333 PP

>> T3SSipB  Type III cell invasion protein SipB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   5.6      0.19        42      66     106 ..       9      44 ..       2      81 .. 0.62
   2 ?    5.0   8.6      0.14        30      23      93 ..      88     158 ..      58     163 .. 0.57

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.19
                 HHHHHHHHHHHHHHHHHHHHHHHHHTT---------CHHHH CS
     T3SSipB  66 iekadqaksaadaatkkvdeaqkrlkeLaPdePekakleaa 106
                 ++k++ +  +ad+ ++kv+e q+++k L     e+ +l+++
  KKY14974.1   9 QKKMNALRIEADENQAKVEELQAKIKTL-----EQENLQKE 44 
                 4556666667777777777777777777.....22222222 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHTTTTT----STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT- CS
     T3SSipB  23 LenrlaawkamskaqqeaasklSdelqtalseakgatddleaaiekadqaksaadaatkkvdeaqkrlkeL 93 
                 L+ rl+  +   + + + + +  ++l++   +a    ++++a   + dq +s++++  kk  + qk l+eL
  KKY14974.1  88 LQRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQEL 158
                 34444444444444444444444555554444444445555555555555555555555555555555555 PP

>> YbaB_DNA_bd  YbaB/EbfC DNA-binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   5.1      0.15        32       7      83 ..       8      87 ..       7      93 .. 0.83
   2 ?    1.8   0.2       1.3   2.8e+02       3      33 ..      98     128 ..      96     137 .. 0.82
   3 ?    7.7   0.6     0.019       4.2       3      24 ..     140     161 ..     138     164 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHTTSEEEEEETTTTEEE....EEETT--EEEEEE-GGGG.GS-HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  YbaB_DNA_bd  7 mqkkmeeaqeelaekevegssggglVkV....tvngkgevksikIdpslldpedkemLedlivaAvndAlkkaeeeaeeem 83
                 +qkkm ++  e +e + +++  +  +k      ++ +++++s++  + ll++e +e Le  i++A  +A + +  ++++e+
   KKY14974.1  8 IQKKMNALRIEADENQAKVEELQAKIKTleqeNLQKEQDITSLTHRNGLLEAE-VEKLESGIKEAKAEAGSSSHHATQNET 87
                 577888777777777777777777777777778889999**********9866.9**************999999998875 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 1.3
                  HHHHHHHHHHHHHHHHTTSEEEEEETTTTEE CS
  YbaB_DNA_bd   3 qaqkmqkkmeeaqeelaekevegssggglVk 33 
                  +a++  k + e+ e+l ++ v++   +  V+
   KKY14974.1  98 EAEEADKTLRETNEKLRQTDVKAGHYERKVQ 128
                  5888999999*********999877666666 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.019
                  HHHHHHHHHHHHHHHHTTSEEE CS
  YbaB_DNA_bd   3 qaqkmqkkmeeaqeelaekeve 24 
                  + ++m kk +++q+el+e ev+
   KKY14974.1 140 KYEEMAKKYADLQKELQELEVS 161
                  6789***************997 PP

>> Dynamitin  Dynamitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8  25.3      0.14        30      73     225 ..      31     163 ..       3     165 .] 0.45

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.14
   Dynamitin  73 ykasssreyeladegeeketleqklqRLqrEveeleeEvekakeaakeseeeeldpvelaeqleslqkqLeeleellgedsaasltdaqealakrllsq 171
                  k+++ ++ +l++e+ +  +l+++   L +Eve+le+ +++ak++a +s+          +q e+lq++L+ l                          
  KKY14974.1  31 AKIKTLEQENLQKEQ-DITSLTHRNGLLEAEVEKLESGIKEAKAEAGSSSHHA-------TQNETLQRRLQLL-------------------------- 95 
                 233333333333332.5555555555555555555555555555554333222.......3333333333333.......................... PP

   Dynamitin 172 leefkeskaaskkk...............eksnkityelyyapeq...eksqqlakiaelekRLaeLEklvG 225
                     + ++++++k+                + +     l +a++q   + ++ ++k a+l k L+eLE + G
  KKY14974.1  96 ----EDEAEEADKTlretneklrqtdvkaGHYERKVQALESARDQwesKYEEMAKKYADLQKELQELEVSMG 163
                 ....22222222223333333333332221112222334444444664666778889999999999999988 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   8.0      0.44        96      97     137 ..       8      48 ..       1      75 [. 0.38
   2 ?    9.3  13.0    0.0034      0.74      46     119 ..      85     159 ..      77     163 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.44
  HAUS-augmin3  97 klkrlnkLqvqaaslqqelrkleeeekeakkklkeaqeelr 137
                   ++k++n L + a ++q + ++l+++ k+ ++++ + +++++
    KKY14974.1   8 IQKKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDIT 48 
                   44444444444444444444444444433333222222211 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0034
  HAUS-augmin3  46 geaLeeaLktie.psdlkqedvellevileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqelrkle 119
                    e+L+  L+ +e + ++  ++ +++++ l + + ++ ++e+++q+L++ ++  +++++++    a+lq+el++le
    KKY14974.1  85 NETLQRRLQLLEdEAEEADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELE 159
                   67899999999944444449999************************************************9998 PP

>> Spc29  Spindle Pole Component 29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   3.6     0.028       6.1     119     169 ..      19      69 ..       2      89 .. 0.72
   2 ?    6.0   1.9     0.043       9.4     111     165 ..     105     159 ..      95     163 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.028
       Spc29 119 ivelekklddqkleIkeLkreleqqrtvnseLqekvaeleeevkrlaaleh 169
                  +e + k+++ + +Ik+L++e  q++  +  L+++   le ev++l++ ++
  KKY14974.1  19 ADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIK 69 
                 356666999999999999999999999999999999999999988887544 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.043
       Spc29 111 siyssvkkivelekklddqkleIkeLkreleqqrtvnseLqekvaeleeevkrla 165
                 ++++  +k  +++ k  + + ++++L+ + +q +   +e+ +k+a l++e+++l+
  KKY14974.1 105 TLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELE 159
                 4556666777888899999*******************************99887 PP

>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  26.0     0.044       9.7      22     141 ..      23     160 ..       9     164 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.044
   Rootletin  22 qaKvlqYkkrcseleqrllektselektkltlll..................ssareleeeesadleealakLeeErqrsek.laqvnslLreqleear 101
                 qaKv + + +++ leq+ l+k+++  + + ++ l                     ++ + ++++ l++ l+ Le+E + ++k l ++n+ Lr+   +a 
  KKY14974.1  23 QAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLleaeveklesgikeakaeAGSSSHHATQNETLQRRLQLLEDEAEEADKtLRETNEKLRQTDVKAG 121
                 556666666666666555554333333322222244444444444444333333355566666677888889999999887538899999999888887 PP

   Rootletin 102 qaneaLtedlqkltkdwerlreeleqkekewreeeeafne 141
                 +  ++ +  l+  +++we+  ee+ +k +++++e ++++ 
  KKY14974.1 122 HYERKVQA-LESARDQWESKYEEMAKKYADLQKELQELEV 160
                 77777654.7777899999999999999999999888765 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   8.5     0.025       5.4       5      72 ..      21      87 ..       5      93 .. 0.75
   2 ?    3.6   7.1      0.47     1e+02      42      75 ..      82     115 ..      47     150 .. 0.48
   3 ?    4.6   0.4      0.24        52       9      43 ..     126     160 ..     119     165 .] 0.63

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.025
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXX CS
        YabA  5 elfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelsegken 72
                e  +k+eel+ ++++l +e  + ++++++l+++n  Le+e ekl + ++e+++++  ++++  + +e 
  KKY14974.1 21 ENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKAEAG-SSSHHATQNET 87
                45678999999999999999999999999999999999999999999954444443.33334444444 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.47
                 HHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXXXX CS
        YabA  42 eleneklrerleeeekkekekkkelsegkenLar 75 
                  ++ne+l++rl+  e++++e +k+l+e++e+L++
  KKY14974.1  82 ATQNETLQRRLQLLEDEAEEADKTLRETNEKLRQ 115
                 3334444444444444444444444444443332 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA   9 kleeleeqleelleeleelkeelaelleenaeLel 43 
                 k+++le+  ++  ++ ee+ ++ a+l +e +eLe+
  KKY14974.1 126 KVQALESARDQWESKYEEMAKKYADLQKELQELEV 160
                 45666666666666666666666666666666654 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  13.8     0.069        15       9      70 ..       9      70 ..       6      98 .. 0.74
   2 ?    3.0   5.1       0.5   1.1e+02       1      50 [.      57     109 ..      57     117 .. 0.61
   3 ?    4.8   9.7      0.14        30       5      67 ..      99     161 ..      88     164 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.069
        BRE1  9 ekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsK 70
                +k +++l+ ++++ +++++ l+ k++ le+e  + +q + ++ +    le+e+ kL + ++ 
  KKY14974.1  9 QKKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKE 70
                67889999999999999999999999999999999999999999999999999999986643 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.5
        BRE1   1 lqkELvklekafeelseqlskkvkelt...ileekklrleaekakadqkyfaa 50 
                 l++E++kle  ++e+++++ +     t    l+ +++ le e ++ad+   ++
  KKY14974.1  57 LEAEVEKLESGIKEAKAEAGSSSHHATqneTLQRRLQLLEDEAEEADKTLRET 109
                 56788888888888888776665554400045555555666777777665554 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.14
        BRE1   5 LvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkl 67 
                  ++  k  +e++e+l++   +  + e k++ le+  ++ + ky +  ++  +l++el+ L  +
  KKY14974.1  99 AEEADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELEVS 161
                 455566677788888888888889999999999999999999999999999999999998765 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  15.9     0.029       6.4     134     255 ..       3     154 ..       1     163 [. 0.38

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.029
  Exonuc_VII_L 134 aAelvvpdkael........eeqleelerrlekaikrlleekkqr..............leklasrlkspee...llerkrqrldeleerleralkk 205
                   aA++++++k +         ++++eel++++++  +++l+++ q               +ekl+s +k++++     ++++ + + l++rl+  l+ 
    KKY14974.1   3 AANALIQKKMNAlrieadenQAKVEELQAKIKTLEQENLQKE-QDitslthrnglleaeVEKLESGIKEAKAeagSSSHHATQNETLQRRLQL-LED 97 
                   666666554443455555556777777777777777777533.34122222222222223333333322211111233333333344444444.444 PP

  Exonuc_VII_L 206 qlkkkrerleelkerl.k.....ekleekkerlkklkerle....lleekkerleeleek 255
                   +++++ ++l+e++e+l +         + ++++++l++  +    + ee  ++++ l+++
    KKY14974.1  98 EAEEADKTLRETNEKLrQtdvkaG---HYERKVQALESARDqwesKYEEMAKKYADLQKE 154
                   455555555555555532332221...122222222111112223333333333334444 PP

>> GIT_CC  GIT coiled-coil Rho guanine nucleotide exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.5     0.011       2.3      40      64 ..      20      44 ..       2      46 .. 0.75
   2 ?   -0.2   0.0       4.2   9.3e+02      30      59 ..      45      74 ..      43      81 .. 0.76
   3 ?    1.7   1.9       1.1   2.3e+02      21      65 ..      68     115 ..      66     116 .. 0.63
   4 ?    5.6   0.1     0.066        14      29      63 ..     124     158 ..     118     161 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.011
      GIT_CC 40 tslsdelrlLQskvqkLqaeNaqlr 64
                 + + ++++LQ k+++L++eN q +
  KKY14974.1 20 DENQAKVEELQAKIKTLEQENLQKE 44
                4557789**************9865 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 4.2
      GIT_CC 30 akiqqLlkvNtslsdelrlLQskvqkLqae 59
                  i+ L   N  l+ e+++L s +++ +ae
  KKY14974.1 45 QDITSLTHRNGLLEAEVEKLESGIKEAKAE 74
                567788888888888998888887766655 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 1.1
      GIT_CC  21 lKkalaaseakiqqLlkvNtslsdelrlLQskv....qkLqaeNaqlrd 65 
                 +K+a a +++   +    N+ l++ l+lL  +     ++L + N++lr+
  KKY14974.1  68 IKEAKAEAGSSSHHAT-QNETLQRRLQLLEDEAeeadKTLRETNEKLRQ 115
                 6777777777666654.48888888888877652222467777777776 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.066
      GIT_CC  29 eakiqqLlkvNtslsdelrlLQskvqkLqaeNaql 63 
                 e+k+q+L  +  + + + +++ +k   Lq+e ++l
  KKY14974.1 124 ERKVQALESARDQWESKYEEMAKKYADLQKELQEL 158
                 78888888888888888888888888888775554 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   2.1     0.072        16       7      37 ..      45      75 ..      10      78 .. 0.69
   2 ?   -0.7   0.1       8.8   1.9e+03      10      28 ..      86     104 ..      79     112 .. 0.63
   3 ?    3.0   0.3      0.64   1.4e+02       8      36 ..     126     154 ..     123     156 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.072
         LPP  7 sqVsqLkskvdqlssdvnsakaaaqaakeEA 37
                +++ +L      l+++v+++++ +++ak+EA
  KKY14974.1 45 QDITSLTHRNGLLEAEVEKLESGIKEAKAEA 75
                3444555555555555999999999999998 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 8.8
         LPP  10 sqLkskvdqlssdvnsaka 28 
                 ++L++  + l++++++a +
  KKY14974.1  86 ETLQRRLQLLEDEAEEADK 104
                 5566666666666666555 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.64
         LPP   8 qVsqLkskvdqlssdvnsakaaaqaakeE 36 
                  V++L+s  dq +s+ +++++  ++ ++E
  KKY14974.1 126 KVQALESARDQWESKYEEMAKKYADLQKE 154
                 59999999999999999999998888877 PP

>> YjcZ  YjcZ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.5       0.9     2e+02      29      61 ..       7      38 ..       2      68 .. 0.57
   2 ?    9.5   4.3    0.0027      0.58      35     123 ..      71     159 ..      61     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.9
        YjcZ 29 LlqellastqlraseinaevnaalelrLkllek 61
                L+q+ +   + +a e++a+v + l+ ++k le+
  KKY14974.1  7 LIQKKMNALRIEADENQAKVEE-LQAKIKTLEQ 38
                4455555555555555555554.5555555543 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0027
        YjcZ  35 astqlraseinaevnaalelrLkllekLsreldpghLALttiaqrlall...sqtlaekasaapklaqalaalaeefaarverkekaltqre 123
                 a++++ +s  +a+ n++l+ rL+lle+ ++e d++   L +++++l +     +  ++k +a +  +++ +  +ee+a++ + + k l++ e
  KKY14974.1  71 AKAEAGSSSHHATQNETLQRRLQLLEDEAEEADKT---LRETNEKLRQTdvkAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELE 159
                 56777788899999*************99999885...777777775541115667789999******************999999998765 PP

>> Nup88  Nuclear pore component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  19.5     0.032       7.1     533     673 ..       7     155 ..       4     163 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.032
       Nup88 533 llsratqvlReeylkkqelvreeiekrvkllkkqkeqqleelqsleeerkslseraeklAekyeeikdkQeklvrr......vkkvlkrlnsklpvlse 625
                 l+++ ++ lR e  ++q  v ee++ ++k l+++  q+++++ sl +    l+ ++ekl     e+k +  +  +       +++ l+ l++++    +
  KKY14974.1   7 LIQKKMNALRIEADENQAKV-EELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAKAEAGSSSHHatqnetLQRRLQLLEDEAEEADK 104
                 67778888888887887777.79*************************************999999976544333300001133334444444445555 PP

       Nup88 626 aeremkkelekikeklkslknalk...qvkkkldkqrkqiakskeeekkss 673
                 + re +++l++++ k  +++++++    ++ +++ + +++ak+  + +k+ 
  KKY14974.1 105 TLRETNEKLRQTDVKAGHYERKVQaleSARDQWESKYEEMAKKYADLQKEL 155
                 556666677777777666665544000444555555555555544444443 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   6.1     0.026       5.7      57     100 ..       6      50 ..       2      53 .. 0.72
   2 ?    6.7   6.6     0.037       8.1      31      99 ..      47     115 ..      45     119 .. 0.87
   3 ?    4.9   0.6      0.14        31      70     106 ..     128     164 ..     117     165 .] 0.56

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.026
                   HHCCCCCCTT.S-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  57 keIgkakkkk.edaeeliaevkelkeelkaleaelkeleaelekl 100
                   + I+k++++   +a+e  a+v+el++++k+le+e  + e+++++l
    KKY14974.1   6 ALIQKKMNALrIEADENQAKVEELQAKIKTLEQENLQKEQDITSL 50 
                   567777776677888888888888888888888877777777665 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.037
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  31 lleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelek 99 
                   + +l  +   l++e+e+l +  +e+ +e g+ +    + e l  + + l +e ++++++l+e +++l +
    KKY14974.1  47 ITSLTHRNGLLEAEVEKLESGIKEAKAEAGSSSHHATQNETLQRRLQLLEDEAEEADKTLRETNEKLRQ 115
                   556666677789999999999999999999999999999999********************9999976 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.14
                   CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCTS-- CS
  Seryl_tRNA_N  70 eeliaevkelkeelkaleaelkeleaeleklllaiPN 106
                   ++l    ++   + +++ ++ ++l++el++l  +++N
    KKY14974.1 128 QALESARDQWESKYEEMAKKYADLQKELQELEVSMGN 164
                   4444444555555555556666666666665555555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   2.6      0.49   1.1e+02      31      56 ..      17      42 ..       6      45 .. 0.76
   2 ?    9.0   3.7      0.01       2.2      11      58 ..      25      72 ..      20      80 .. 0.86
   3 ?    4.3   2.1      0.29        64      29      55 ..      81     107 ..      78     112 .. 0.78
   4 ?    5.1   1.5      0.16        34       4      54 ..     112     162 ..     109     164 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.49
                HHHHHHHHHHHHHHHT-XXXXXXXXX CS
        SlyX 31 qqidrlqrqlrllaerlkeleessga 56
                 + d+ q+++++l+ ++k+le+++ +
  KKY14974.1 17 IEADENQAKVEELQAKIKTLEQENLQ 42
                56788899999999999999888764 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.01
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXX CS
        SlyX 11 klafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessgase 58
                k+  ++  i++L ++  + +q+i+ l+++  ll+ ++++le+  ++++
  KKY14974.1 25 KVEELQAKIKTLEQENLQKEQDITSLTHRNGLLEAEVEKLESGIKEAK 72
                666778899****************************99998866554 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX  29 qqqqidrlqrqlrllaerlkeleessg 55 
                 ++ q + lqr+l+ll+++ +e++++ +
  KKY14974.1  81 HATQNETLQRRLQLLEDEAEEADKTLR 107
                 567889999999999999988776654 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXX CS
        SlyX   4 rleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleess 54 
                 +l +  +k  + e+ +++L  +  + + + +++ ++ + l+++l+ele s+
  KKY14974.1 112 KLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQELEVSM 162
                 555666778888999999999988888999999999999999999998765 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   9.1     0.043       9.5     240     333 ..      10     138 ..       2     152 .. 0.59

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.043
        FUSC 240 rllarlraeeaaavpelaallaelaal....................................eaaaaaealeaalaalrarlralrraleadadtaal 302
                 + +++lr e ++ ++++++l a++++l                                    ++a ++++++++ ++l++rl+ l+ ++e++  t ++
  KKY14974.1  10 KKMNALRIEADENQAKVEELQAKIKTLeqenlqkeqditslthrnglleaeveklesgikeakAEAGSSSHHATQNETLQRRLQLLEDEAEEADKTLRE 108
                 566666666666666666666666666666666666666444433333333334444444444456666666666666666666666666666666666 PP

        FUSC 303 llarlaellaelaqllaslraleaaiaaarr 333
                   + l+++  ++ +  ++++ale+a+ + ++
  KKY14974.1 109 TNEKLRQTDVKAGHYERKVQALESARDQ-WE 138
                 6666666666666666666666666665.44 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   5.9       0.6   1.3e+02      10      39 ..      10      39 ..       6      66 .. 0.70
   2 ?    2.4   6.6      0.92     2e+02      11      67 ..      53     112 ..      43     116 .. 0.69
   3 ?    8.4   2.1     0.013       2.8      24      62 ..     118     156 ..     108     162 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.6
         CLZ 10 lKdglLDeeaakagaeqkeleekverLess 39
                 K++ L  ea + +a+ +el+ k++ Le++
  KKY14974.1 10 KKMNALRIEADENQAKVEELQAKIKTLEQE 39
                577777777777777777777777777763 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.92
         CLZ  11 KdglLDeeaakag...aeqkeleekverLessLeaLqtrlarLlaeyessqrkLkqRitk 67 
                 + glL+ e++k +   +e+k      ++  ++ e+Lq rl+ L +e e+++++L++  +k
  KKY14974.1  53 RNGLLEAEVEKLEsgiKEAKAEAGSSSHHATQNETLQRRLQLLEDEAEEADKTLRETNEK 112
                 567888886666534333333333444555667899999999999999999999876555 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.013
         CLZ  24 aeqkeleekverLessLeaLqtrlarLlaeyessqrkLk 62 
                  ++   e+kv+ Les+ ++ + +++ + ++y   q++L+
  KKY14974.1 118 VKAGHYERKVQALESARDQWESKYEEMAKKYADLQKELQ 156
                 556678999999999999999999999999999998886 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.8    0.0078       1.7      46     100 ..       9      60 ..       3      62 .. 0.81
   2 ?    2.0   2.7      0.98   2.1e+02      40      83 ..     111     159 ..      81     165 .] 0.54

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0078
     DUF2730  46 dkrlteletkvenLPtakdlekLkllladlrgelkaleaevrqlshqvdLLLene 100
                 +k++++l ++ ++  ++  +e+L+ +++ l+ e  + e+++++l h+ +LL e+e
  KKY14974.1   9 QKKMNALRIEADE--NQAKVEELQAKIKTLEQENLQKEQDITSLTHRNGLL-EAE 60 
                 5666666555554..89999***************************9975.665 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.98
     DUF2730  40 ekveendkrlteletkvenLPtakd.....lekLkllladlrgelkale 83 
                 ek++++d +  + e kv+ L +a+d      e++ ++ adl+ el++le
  KKY14974.1 111 EKLRQTDVKAGHYERKVQALESARDqweskYEEMAKKYADLQKELQELE 159
                 3344445555555555555555444111112344444444444444444 PP

>> KELK  KELK-motif containing domain of MRCK Ser/Thr protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   6.8       2.8   6.1e+02       6      36 ..       9      39 ..       6      75 .. 0.67
   2 ?    9.3  14.0    0.0069       1.5       4      68 ..      87     158 ..      84     160 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 2.8
        KELK  6 ekqlrllkqEkeelqkelaeaqErlksqkke 36
                +k++ +l+ E +e q +++e+q ++k+ ++e
  KKY14974.1  9 QKKMNALRIEADENQAKVEELQAKIKTLEQE 39
                5666666666666666666666666665544 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0069
        KELK   4 eLekqlrllkqEkeelqkelaeaqErlksqk.......keLkdaisqrklamqefsevneklselrsqkqkl 68 
                 +L+++l+ll+ E ee+ k l e++E+l++ +       +  +   s r+     ++e+ +k+++l+++ q+l
  KKY14974.1  87 TLQRRLQLLEDEAEEADKTLRETNEKLRQTDvkaghyeRKVQALESARDQWESKYEEMAKKYADLQKELQEL 158
                 79*************************987522222114566677788888899*************99987 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.8     0.029       6.3       9      52 ..       9      52 ..       5      55 .. 0.85
   2 ?    4.9  10.5      0.14        30       4      92 ..      67     161 ..      64     164 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.029
     DUF5082  9 qaqiaelrseiaaleekIerLkeaktklsdekeslkqkkkklek 52
                q+++  lr e++ ++ k+e+L++  ++l++e+ + +q++++l++
  KKY14974.1  9 QKKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQDITSLTH 52
                88999999999999999999999989999998888888887765 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.14
     DUF5082   4 kisklqaqiaelrseiaaleekIerLkeaktklsdekeslkqkkkklekplnsse......sWkGkeennydgirsnlessyqtyvdkldelida 92 
                  i++++a++++ ++ + ++e   +rL+   ++ ++++++l ++++kl++++++            +++++ +++++++ ++y   +++l el+ +
  KKY14974.1  67 GIKEAKAEAGSSSHHATQNETLQRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGhyerkvQALESARDQWESKYEEMAKKYADLQKELQELEVS 161
                 68899999999999999999999****99999999999999999999999999885555554456678888899999999999999999988765 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   5.9     0.089        20       9      46 ..       8      45 ..       1      50 [. 0.83
   2 ?    9.9   1.3    0.0037      0.82       4      40 ..     125     161 ..     122     164 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.089
       Spc24  9 iakelsdleselesleselaelkeeleeleeeseekes 46
                i+k+++ l  e+++ +++ +el++++++le+e+ +ke+
  KKY14974.1  8 IQKKMNALRIEADENQAKVEELQAKIKTLEQENLQKEQ 45
                78999999999999999999999999999999877554 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0037
       Spc24   4 nekfriakelsdleselesleselaelkeeleeleee 40 
                 ++ +++  + ++ es+ e++ ++ a+l++el+ele +
  KKY14974.1 125 RKVQALESARDQWESKYEEMAKKYADLQKELQELEVS 161
                 55666777788899*******************9975 PP

>> IFT46_B_C  Intraflagellar transport complex B protein 46 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   1.0       1.8     4e+02      89     119 ..      17      48 ..       4      75 .. 0.55
   2 ?    9.5   4.3    0.0033      0.73      91     169 ..      75     154 ..      56     163 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 1.8
                 XXXXXXXXXXX.XXXXXXXXXXXX.XXHHHHH CS
   IFT46_B_C  89 lrevskksaakekskvvksienae.knpkkid 119
                 +++  ++++++e ++++k++e+++ +++++i+
  KKY14974.1  17 IEADENQAKVEELQAKIKTLEQENlQKEQDIT 48 
                 33333344444444444444433334444443 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0033
                 XXXXXXXXX.XXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHH-TT----SS----TTGGGS---HHHHHHHTT--.--TT CS
   IFT46_B_C  91 evskksaakekskvvksienaeknpkkidkWiedieelhkkkppptveyskkmpdieelmqewpeefeealkkvk.lpsa 169
                 + s++++a+++++  ++++  e+++++ dk +++ +e  +++  ++ +y++k++ +e+  ++w++++ee++kk + l+++
  KKY14974.1  75 AGSSSHHATQNETLQRRLQLLEDEAEEADKTLRETNEKLRQTDVKAGHYERKVQALESARDQWESKYEEMAKKYAdLQKE 154
                 4566677777999999***9*************************************************99975414444 PP

>> HMMR_N  Hyaluronan mediated motility receptor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6  30.0      0.18        39     178     318 ..      20     159 ..       1     163 [. 0.51

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.18
      HMMR_N 178 kevsvkQedmeaklqvt.qknLeeskakvaqLkeklvslekekieekseteklleyieelsnvseqlekykldiaqleellkekndeiesLkssLeeke 275
                  e  +k e+++ak++ + q+nL +  + ++ L  ++  le e ++  s +++  ++    s  + q e  + +++ le+ ++e+++ + +  ++L++ +
  KKY14974.1  20 DENQAKVEELQAKIKTLeQENL-QKEQDITSLTHRNGLLEAEVEKLESGIKEAKAEAGSSSHHATQNETLQRRLQLLEDEAEEADKTLRETNEKLRQTD 117
                 2223344555555555523444.4455566666666666655333334445555555555555555566666666666666666666666666666655 PP

      HMMR_N 276 qelskqvkdlnekckllekekeelvreeee...keqtlsaEleelk 318
                 +    ++   + k++ le+ +++  +++ee   k   l++El+el+
  KKY14974.1 118 V----KAGHYERKVQALESARDQWESKYEEmakKYADLQKELQELE 159
                 5....55556666666665555444444441114445667777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3343  (0.186458); expected 358.6 (0.02)
Passed bias filter:                      940  (0.052429); expected 358.6 (0.02)
Passed Vit filter:                       206  (0.0114898); expected 17.9 (0.001)
Passed Fwd filter:                       141  (0.00786435); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              82  [number of targets reported over threshold]
# CPU time: 1.57u 0.40s 00:00:01.97 Elapsed: 00:00:00.67
# Mc/sec: 739.11
//
Query:       KKY14975.1  [L=231]
Description: putative protein required for cell viability [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-40  136.4  11.3    8.6e-40  136.4  11.3    2.3  2  Nop25     Nucleolar protein 12 (25kDa)


Domain annotation for each model (and alignments):
>> Nop25  Nucleolar protein 12 (25kDa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.4  11.3   4.8e-44   8.6e-40       2     137 .]       8     141 ..       7     141 .. 0.89
   2 ?   -3.5  13.8      0.74   1.3e+04      32      72 ..     186     226 ..     180     231 .] 0.73

  Alignments for each domain:
  == domain 1  score: 136.4 bits;  conditional E-value: 4.8e-44
       Nop25   2 kkakkkkveevtFDkdsRkeYLTGFhKRKlqRqkkAqeeakeqereerieeRkklreerkkeleeqleevketlkeseeeeeeeee.eeeeeeeeeeee 99 
                 +k +++ vee+tFD d+R+e+LTGFhKRKl+R+k+A+e+a++++r e+ieeR++lre rk ele++leev+++l+ + + +e++ + ++++++++ee+ 
  KKY14975.1   8 RKLDTEVVEEITFDPDARQEFLTGFHKRKLERAKHARETAEKKARAEKIEERRRLREGRKIELERHLEEVNALLQPQGTGNETTGTsDDDDDDDDEEDG 106
                 7888899********************************************************************955544444330344446678888 PP

       Nop25 100 eeeewegfedeeeeeeeddeeeyideekettVtvesld 137
                   +ew+gf++   ++++++e+eyide++ ttVtve++d
  KKY14975.1 107 GYQEWNGFQE---PSPVNHEAEYIDEDRFTTVTVEEMD 141
                 99******95...8**********************97 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.74
       Nop25  32 qRqkkAqeeakeqereerieeRkklreerkkeleeqleevk 72 
                 +R k+A ++ k+++++ r e + + +  r k+ +++ ++ k
  KKY14975.1 186 ERPKNATQRPKQKKKKFRYESKAERKMTRFKQKSKNSRQAK 226
                 78899998888888888888887777777777666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1895  (0.105695); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 1471.61
//
Query:       KKY14976.1  [L=94]
Description: putative er protein big1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0025   17.7   0.0     0.0031   17.4   0.0    1.1  1  ATP-synt_S1  Vacuolar ATP synthase subunit S1 (ATP6S1)
  ------ inclusion threshold ------
       0.14   12.8   0.0       0.19   12.3   0.0    1.1  1  OAD_gamma    Oxaloacetate decarboxylase, gamma chain
       0.16   10.6   0.0       0.16   10.6   0.0    1.1  1  EVC2_like    Ellis van Creveld protein 2 like protein


Domain annotation for each model (and alignments):
>> ATP-synt_S1  Vacuolar ATP synthase subunit S1 (ATP6S1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   5.1e-07    0.0031      97     139 ..      40      83 ..      34      88 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.1e-07
  ATP-synt_S1  97 vgFfsigiwmgLvvslillliltyglhmimdlktm.drFddpkg 139
                   +++++g +mg +v l lllil +++ ++ +l+     Fd   g
   KKY14976.1  40 YQYLTPGLFMGFLVALPLLLILYVAIRALSSLEVSyAAFDKDTG 83 
                  6799***************************9854155666555 PP

>> OAD_gamma  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.2e-05      0.19       8      52 ..      48      92 ..      47      94 .] 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.2e-05
   OAD_gamma  8 llGmgvVFvvLilLslvislfskiikkkakkkkkkakaaaaaaaa 52
                ++G++v +  L++L+++i+++s +   +a+  k++ +++a+a+++
  KKY14976.1 48 FMGFLVALPLLLILYVAIRALSSLEVSYAAFDKDTGPQSASAPKK 92
                69999999***********************99999999988876 PP

>> EVC2_like  Ellis van Creveld protein 2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   2.7e-05      0.16      59     111 ..      36      89 ..      15      94 .] 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 2.7e-05
   EVC2_like  59 vlpnhglhaagfvvaflvslvLtllvllllartralkvsllsrkr.qknreesk 111
                 ++  + +   g++++flv+l L+l+   +++  ++l+vs     + ++ +  s 
  KKY14976.1  36 LFDRYQYLTPGLFMGFLVALPLLLILYVAIRALSSLEVSYAAFDKdTGPQSASA 89 
                 6777889999*************************9998776555334455544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.48
# Mc/sec: 591.98
//
Query:       KKY14983.1  [L=710]
Description: putative oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.5e-111  372.5   0.0   4.1e-111  371.7   0.0    1.3  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  371.7   0.0  2.3e-115  4.1e-111       5     462 .]      80     578 ..      77     578 .. 0.96

  Alignments for each domain:
  == domain 1  score: 371.7 bits;  conditional E-value: 2.3e-115
                 SSSEEEEEETTTCEEEE.EEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHH CS
      Aldedh   5 esetievinPatgevia.kvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryya 101
                 +++ i++i+Pa+g+v+  +++a +++ +d a+++  ea+++wa++++++R+++Lr++ +++ +++++++++ +l+ Gk+  +a   e+  +++ l++++
  KKY14983.1  80 NEDIIPCICPADGRVLDpSFKAQGRDWIDIAIQRTTEAQPRWAATTFAQRRQVLRTILRYVLDHQDDIVTACCLDSGKTRLDAYFgEILVTAEKLKWTI 178
                 33449***********84677888889************************************************************************ PP

                 HHHHH.HSEEEEEEC...TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHT....TS-TTSEEE--SS CS
      Aldedh 102 elaek.legevlpss...egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeea....glPkgvlnvvtgs 192
                 e+ ek l+ +  p++     k++ vr+ePlGvv+a ++WN+P++ ++  ++ a+ +GN++v+KP+e++++s++++ ++++ a    g ++++++ v   
  KKY14983.1 179 EHGEKsLQPSKRPTNflmFYKDNEVRYEPLGVVSACVSWNYPFHNFISPIISAIFTGNAIVVKPSEQVAWSSVYFNNIVRCAlsqcGHDPEIVQSVIC- 276
                 *****9999988886688899*******************************************************9998877777**********99. PP

                 TCCHHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TT....SHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHH CS
      Aldedh 193 gsevgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivled....aDldkaveaivkgafgnaGQvCiaasrllvqesiydefve 287
                   + +++l++hp++  ++f+Gs+e+++k+ ++aak+l++v++ElGGk+p+ivl+d    a+l+++++ +++g+f naGQ+Ci ++r++   ++yde+++
  KKY14983.1 277 LPKDADYLTSHPGISYITFIGSREIAHKVCASAAKSLTPVCVELGGKDPAIVLDDprtvANLEDVASILMRGVFQNAGQNCIGIERVIALPGVYDELIK 375
                 556689************************************************988888*************************************** PP

                 HHHHHHHT--BS-T.TS..........................TT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT.E.SB-SSSTTEE--EEEES CS
      Aldedh 288 klveaakklkvgdp.ld..........................edtdvGPliseaqlekvekyveeakeegaklllGge.reeaglekgyfvePtvlan 358
                  +++++++lk+g+  ld                          ++td+G+lis++  +++e+++++a+++ga l +Gg+  +++++ +g +++Pt+l+ 
  KKY14983.1 376 IVTARIENLKIGSVmLDekrnstavdslasqspstshidtilpSTTDLGALISSRPISRLESLIDSAVSDGAVLHHGGTsFSHPRYPSGTYFSPTLLSS 474
                 *************8455999**********************99***********************************9889**************** PP

                 -TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTE CS
      Aldedh 359 vtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeyt 457
                 vtp+m+iaq+E+F+PV+ ++++ ++ +ai++aN+t+y+L+++vf+ ++  + r+  +++aG++ +Nd  ++ a +lpfgGvk Sg+Gr+ggkegl+  +
  KKY14983.1 475 VTPSMPIAQHELFAPVFLIMPATSLTHAISLANSTPYALGSSVFGYEPIAISRCLTEVKAGMISVNDFGAYYATSLPFGGVKGSGYGRFGGKEGLRGLC 573
                 ********************************************************************9999999************************ PP

                 EEEEE CS
      Aldedh 458 evktv 462
                 ++k+v
  KKY14983.1 574 NMKSV 578
                 ***97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 4556.58
//
Query:       KKY14984.1  [L=715]
Description: putativegpd family base excision dna repair protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-05   24.4   0.0    0.00094   19.6   0.0    2.8  3  HhH-GPD   HhH-GPD superfamily base excision DNA repair protei


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.035   6.3e+02       2      20 ..      31      49 ..      31      56 .. 0.90
   2 ?   -3.3   0.0      0.71   1.3e+04       8      34 ..     192     217 ..     191     219 .. 0.82
   3 !   19.6   0.0   5.2e-08   0.00094      27      92 ..     298     514 ..     285     527 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.035
                HHHHHTTS-HHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  2 sailsqqtsderanriier 20
                s+i+ q+ + +++++++er
  KKY14984.1 31 SMIVEQNATLNVWASATER 49
                79***************98 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.71
                 TS-HHHHHHHHHHHHHHHSHCSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD   8 qtsderanriierlferfgfptpedla 34 
                  t+d r++  ++r+++  g p+ e++ 
  KKY14984.1 192 YTNDYRVKLGYTRFVDGTG-PSKEAIN 217
                 5899999999****99986.8888875 PP

  == domain 3  score: 19.6 bits;  conditional E-value: 5.2e-08
                 HCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH........................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................... RF
     HhH-GPD  27 fptpedladadeekLrelirelGfyrrKakyikelArilv........................................................... 66 
                  p+ +++ +++  kL +++r++G+ +++a+ ik++  ++                                                            
  KKY14984.1 298 KPNYHAMRRVELGKLIDILRPAGLQTKRAQMIKSILDAVYegnksraetavinprtvqsadvkaavdaadfqtfsqgvsqsnvdnmqgspsastatnss 396
                 699************************************************************************************************ PP

                 ..............................................................................................S-SSS CS
                 ..............................................................................................xxxxx RF
     HhH-GPD  67 ..............................................................................................gkpdv 71 
                                                                                                               ++  +
  KKY14984.1 397 paespkdsslspgsdmtevtvpdetlsewvppsgwikhgdvleppegncpdyfapgllsvkylealdnqalvdellsnpgigvktafcigsfnlRR--P 493
                 ********************************************************************************************8654..8 PP

                 --TTSHHHHHHHHHHTTSSSS CS
                 xxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  72 livvDvhvrrilkrlrsikek 92 
                 l++vD+hv r++k l++  + 
  KKY14984.1 494 LFAVDTHVFRMCKFLGWSPAG 514
                 9**************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1122  (0.0625802); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.36s 00:00:01.14 Elapsed: 00:00:00.55
# Mc/sec: 3906.23
//
Query:       KKY14985.1  [L=583]
Description: putative amidophosphoribosyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.6e-13   48.5   0.0    2.3e-12   47.3   0.0    1.6  1  GATase_6      Glutamine amidotransferase domain
    1.7e-11   44.1   0.0    3.3e-11   43.2   0.0    1.5  1  GATase_7      Glutamine amidotransferase domain
    8.9e-08   31.8   0.0    1.8e-07   30.8   0.0    1.5  1  Pribosyltran  Phosphoribosyl transferase domain
    3.2e-05   23.0   0.0    8.8e-05   21.5   0.0    1.7  2  GATase_4      Glutamine amidotransferases class-II
  ------ inclusion threshold ------
       0.27   11.0   0.5        1.2    9.0   0.0    2.2  2  PAM2          Ataxin-2 C-terminal region


Domain annotation for each model (and alignments):
>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   6.3e-16   2.3e-12      13     126 ..      68     208 ..      52     216 .. 0.75

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 6.3e-16
    GATase_6  13 e....valaHvRlaivglaeeegaqPf.psedgrlllvhNGeiynykelreelpalkglafrsrsDtevllall.........eelG..........ee 87 
                 +    ++++H R  + g +++++aqPf +++  +++++hNG   n+++l+  l  ++ ++++++sD+e++l+++         +             ++
  KKY14985.1  68 DlpgfMGVGHLRYPTAGSSANAEAQPFyVNSPYGITFAHNGNLINARQLKHYLDYEAHRHINTDSDSELMLNIFanelnetkkA--RvnqddifaalSR 164
                 0455589************99999***9999999*********************99999************888777665442..0445566667777 PP

    GATase_6  88 vlerlrGmfafaiwdkrentlilardrlgvkplyyavd......e 126
                 v++r++G  a  ++  +  ++i  rd+ g++pl+ ++       +
  KKY14985.1 165 VYDRCEGGWACTAML-AGFGIIGFRDAYGIRPLVLGEResedgkG 208
                 777888866664443.55666677999999999988775544444 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   9.1e-15   3.3e-11       9     122 ..      87     221 ..      77     222 .. 0.90

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 9.1e-15
    GATase_7   9 seagaQPmvssedgrlvivfnGeiyNykelreeLeakgh.rfrtksDtevllallea................ewgeealerlnGmfAfaiwdeeekrl 90 
                  +a+aQP++ ++   +++++nG + N ++l++ L  + h +++t+sD+e++l+++++                + + ++++r++G +A   + +    +
  KKY14985.1  87 ANAEAQPFYVNSPYGITFAHNGNLINARQLKHYLDYEAHrHINTDSDSELMLNIFANelnetkkarvnqddifAALSRVYDRCEGGWACTAMLAGF-GI 184
                 57899****977777*******************98877366*************999***************99*************99988777.79 PP

    GATase_7  91 llaRDrlGikPLyygedk.....gdallfaSelkall 122
                 +  RD +Gi+PL +ge++     g+ +++aSe  al+
  KKY14985.1 185 IGFRDAYGIRPLVLGEREsedgkGKDYMMASESVALN 221
                 ***************99887777789******99986 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   5.1e-11   1.8e-07      28     123 ..     303     405 ..     279     424 .. 0.75

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 5.1e-11
                   GGGEEEEEEETTTHHHHHHHHHHSTT-EE.-EEEEEE-TTT--EE................EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-B CS
  Pribosyltran  28 gkpdvvvgiargGvpfakiladeLevpla.yvrkvkyrpdgseeaargssdes........rlledpagkkVliVDDildtGgTllaalelLkekgp 115
                     +dvv++i+  +v+ a+ +a +L+  ++    k +y   +     +++   +         ++ ++ g+ Vl+VDD +  G+T ++++   +e+g+
    KKY14985.1 303 ADIDVVIPIPETSVTSASSVATYLNKTFCqGFVKNRYIFRTFIMPEQTAR--QqgvrrklnAMANEFVGRNVLLVDDSIVRGTTSREIVTMAREAGA 397
                   3479********************65544466666665554332222221..1234456667*********************************** PP

                   SEEEEEEE CS
  Pribosyltran 116 eevriavl 123
                    +v++a  
    KKY14985.1 398 RKVHFASC 405
                   ****9965 PP

>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.5e-08   8.8e-05      74     165 ..      74     168 ..      56     181 .. 0.79
   2 ?   -3.7   0.0       1.2   4.4e+03     161     204 ..     362     402 ..     347     406 .. 0.68

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.5e-08
    GATase_4  74 vvaHiRkatqGevklenthpFvRelwgrewifAHnGdlke...ykpkl..egrfePvGsTDsElafCelleelasrfekaepsaeeleralaelake 165
                  v H+R  t G+ ++++++pF  +     ++fAHnG+l +   +k++l  e + +   + DsEl++ ++ +el+++  ka+ +++++++al+ + ++
  KKY14985.1  74 GVGHLRYPTAGSSANAEAQPFYVN-SPYGITFAHNGNLINarqLKHYLdyEAHRHINTDSDSELMLNIFANELNETK-KARVNQDDIFAALSRVYDR 168
                 589******************865.45679********552235555564333333457899***********9999.6799999****99988766 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.2
    GATase_4 161 elakeiaelGvfnlllsdgralfahastrLvyilRkaPfgeael 204
                 ++a+e+      n+ll d   +   +s+++v++ R+a   ++++
  KKY14985.1 362 AMANEFV---GRNVLLVDDSIVRGTTSREIVTMAREAGARKVHF 402
                 4444433...3488888888888888888988888887777776 PP

>> PAM2  Ataxin-2 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       0.6   2.2e+03       7      14 ..      88      95 ..      88      95 .. 0.89
   2 ?    9.0   0.0   0.00034       1.2       4      14 ..     358     368 ..     357     368 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.6
                STTSS--- CS
        PAM2  7 NPnAkEFV 14
                N +A++F+
  KKY14985.1 88 NAEAQPFY 95
                999****5 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00034
                 --SSTTSS--- CS
        PAM2   4 SkLNPnAkEFV 14 
                  kLN +A EFV
  KKY14985.1 358 RKLNAMANEFV 368
                 69********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3655.59
//
Query:       KKY14986.1  [L=614]
Description: putative chitin biosynthesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-37  125.9   0.1    1.2e-36  124.7   0.1    1.7  1  fn3_2           Fibronectin type III domain
      1e-22   79.8   0.6    1.9e-22   78.9   0.6    1.5  1  CHS5_N          Chitin biosynthesis protein CHS5 N-terminus
    8.1e-15   54.5   0.1    4.8e-14   52.0   0.0    2.1  2  PTCB-BRCT       twin BRCT domain
    1.6e-08   34.8   0.0    3.6e-08   33.7   0.0    1.6  1  BRCT            BRCA1 C Terminus (BRCT) domain
    2.9e-05   24.4   0.0    6.2e-05   23.3   0.0    1.5  1  BRCT_2          BRCT domain, a BRCA1 C-terminus domain
    3.3e-05   24.0   0.0    0.00014   22.0   0.0    2.2  2  DUF3006         Protein of unknown function (DUF3006)
     0.0063   16.8   0.0      0.022   15.1   0.0    2.0  1  fn3             Fibronectin type III domain
  ------ inclusion threshold ------
      0.092   12.8   0.0       0.18   11.9   0.0    1.4  1  Ribonuclease_P  Ribonuclease P


Domain annotation for each model (and alignments):
>> fn3_2  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.7   0.1   5.5e-40   1.2e-36       2      89 .]     242     329 ..     241     329 .. 0.98

  Alignments for each domain:
  == domain 1  score: 124.7 bits;  conditional E-value: 5.5e-40
       fn3_2   2 kPkaPvlkvknvtqtsvvleWdklelataklksLslykngqrlgkipnplkntstKlsgLsvdteyefqlvlkttaGtyksekikvrt 89 
                 +P+aP l+++n+tqtsvvleWd+l+lat++lksLsly+ng+++g+ip+p ++ +tK+sgL+vdtey+f+lvl+tt+Gty+s  +++rt
  KKY14986.1 242 SPTAPALRLRNATQTSVVLEWDPLHLATSTLKSLSLYRNGSKAGTIPRPHDMLATKISGLAVDTEYTFHLVLRTTGGTYTSTVLNCRT 329
                 8***********************************************************************************9998 PP

>> CHS5_N  Chitin biosynthesis protein CHS5 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.6   8.7e-26   1.9e-22       2      48 .]     170     216 ..     169     216 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 8.7e-26
      CHS5_N   2 vtftvGKlDAglAiLltedahliEFPsvLLPegveaGSivdisvsrn 48 
                 v++tvGK+DAg+A+Llt d++liEFPs+LLP+++++GSivdi+v++n
  KKY14986.1 170 VSLTVGKVDAGVAVLLTGDKRLIEFPSILLPPSITSGSIVDIEVQQN 216
                 78*******************************************98 PP

>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.58   1.3e+03      11      37 ..     304     330 ..     295     330 .. 0.76
   2 !   52.0   0.0   2.2e-17   4.8e-14      13      63 .]     350     400 ..     338     400 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.58
                 TCHHHHHHHHHHTT-EEESSEETT-SE CS
   PTCB-BRCT  11 ddrkslqklieamGaeyskdltksvTH 37 
                 d  +++   +  +G++y+ ++ +  TH
  KKY14986.1 304 DTEYTFHLVLRTTGGTYTSTVLNCRTH 330
                 5567777788899****9999887777 PP

  == domain 2  score: 52.0 bits;  conditional E-value: 2.2e-17
                 HHHHHHHHHHTT-EEESSEETT-SEEEECSS-CHHHHHHHHCT-EEE-CHH CS
   PTCB-BRCT  13 rkslqklieamGaeyskdltksvTHLicksgeGekyekAkkwgipvVsveW 63 
                 ++sl++ +e++Ga+ +++ + ++TH++c++g+G+ +ekA++++ipvV++eW
  KKY14986.1 350 KESLTTAVERIGAKLTDTIRIDTTHFVCTEGRGREWEKAREMNIPVVRPEW 400
                 68999********************************************** PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.6e-11   3.6e-08       9      78 ..     338     404 ..     330     405 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 1.6e-11
                 EEEEEEESTSSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEETHHHHHH CS
        BRCT   9 ckfvitgvldnftrdeleelikehGGkvttevskktthlvvgepesrslkylealklnipivheewlldc 78 
                 +++   g l    +++l + ++  G+k+t+ +  +tth+v+ e   r+ ++++a + nip+v++ew+  c
  KKY14986.1 338 ITVTP-GILPPPLKESLTTAVERIGAKLTDTIRIDTTHFVCTEG--RGREWEKAREMNIPVVRPEWVEGC 404
                 55554.67777789999***************************..********************9877 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.8e-08   6.2e-05      18      84 ..     347     416 ..     343     417 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.8e-08
      BRCT_2  18 spsreklkklIeknGGevvetitsavyiviaesneee...laekrkrrvvspkyIkdCikkgkllpleny 84 
                  p +e l++ +e  G ++++ti+ +++++++++       +a++ + +vv+p++++ C ++g+l+ ++ y
  KKY14986.1 347 PPLKESLTTAVERIGAKLTDTIRIDTTHFVCTEGRGReweKAREMNIPVVRPEWVEGCEREGRLVGVRAY 416
                 57899********************9999999988779*9************************988777 PP

>> DUF3006  Protein of unknown function (DUF3006)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   6.2e-08   0.00014       5      65 ..     176     233 ..     172     235 .. 0.90
   2 ?   -3.3   0.0         5   1.1e+04      23      35 ..     518     530 ..     513     530 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 6.2e-08
     DUF3006   5 RfEgdlAVleledgetidiprsdLpegakeGdvLeieddeieldpeetekrkeriqelldr 65 
                 +++ ++AVl+++d++ i+ p  +Lp++++ G++++ie   ++ + e+++k+ ++ q+l+ r
  KKY14986.1 176 KVDAGVAVLLTGDKRLIEFPSILLPPSITSGSIVDIE---VQQNFEAEKKASASFQSLQSR 233
                 67789********************************...999999999999999998876 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5
     DUF3006  23 iprsdLpegakeG 35 
                 i+r + peg+++G
  KKY14986.1 518 ISRAEVPEGVEDG 530
                 89999****9988 PP

>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   9.8e-06     0.022       5      80 ..     247     318 ..     243     323 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9.8e-06
                 EEEEEEESSSEEEEEEE-CSSSSSTEEEEEEEEEETTSTSTEEEEEECSTSS..EEEEESSSTTEEEEEEEEEEETSE CS
         fn3   5 nlsvsevtstsltvsWeppkdgggpitgYeveyrekgseeewneftvprttt..svtltgLkpgteYevrVqavnggg 80 
                  l++++ t ts++++W+p +   ++ t  ++ +   gs+      t+pr+++    +++gL  +teY++ +  +++gg
  KKY14986.1 247 ALRLRNATQTSVVLEWDPLH--LATSTLKSLSLYRNGSK----AGTIPRPHDmlATKISGLAVDTEYTFHLVLRTTGG 318
                 5889999************7..44444444444444333....4566666555699****************999996 PP

>> Ribonuclease_P  Ribonuclease P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     8e-05      0.18      47      73 ..      59      86 ..      30      94 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8e-05
  Ribonuclease_P 47 svskkvgk.AvvRNrikRllReafrlnk 73
                    ++s+   k Av+RNr +R+++ a+ + +
      KKY14986.1 59 VISQIQLKpAVTRNRARRRFKGAMIAAL 86
                    677778899************9886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.50
# Mc/sec: 3659.77
//
Query:       KKY14987.1  [L=149]
Description: putative eukaryotic translation initiation factor 1a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-22   77.6   0.0    6.5e-22   77.1   0.0    1.2  1  eIF-1a    Translation initiation factor 1A / IF-1


Domain annotation for each model (and alignments):
>> eIF-1a  Translation initiation factor 1A / IF-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.0   3.6e-26   6.5e-22       1      63 [.      32      93 ..      32      94 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 3.6e-26
                EEEEEEEEEEETTTEEEEEE.SSSSBEEEEE-HHHHCT----TT-EEEEEE-TT-TTEEEEES CS
      eIF-1a  1 gevigkViealgnnlfrVelpdngkevlaeipgkfRnkiwikrGdyVlVelspydltkGrIvy 63
                g+ +++V+++lgn++ +  ++d g+++la+i+gk+R+k+wi++Gd++l +l++y+++kG+++ 
  KKY14987.1 32 GQEYAQVVKMLGNGRLEALCFD-GEKRLAHIRGKLRKKVWINQGDIILLSLRDYQDEKGDVIL 93
                699******************6.**************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1143.28
//
Query:       KKY14988.1  [L=932]
Description: putative dna repair protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-19   70.6   0.0    3.5e-19   69.5   0.0    1.6  1  ERCC4     ERCC4 domain
  ------ inclusion threshold ------
       0.14   12.5   0.0       0.38   11.2   0.0    1.7  1  OmpA      OmpA family


Domain annotation for each model (and alignments):
>> ERCC4  ERCC4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0   3.9e-23   3.5e-19       1     153 [.     706     839 ..     706     842 .. 0.87

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 3.9e-23
                 EEGGGCTSHHHH..HHTTTSEEEEE--SSSSE.EE...CTT...............EEEEEEEHHHHHHHHCCSHHHHHHHHHHH.H-SEEEEEEES.. CS
       ERCC4   1 iDsrelksgieeylleelgvevvietlpigdyilwrrkvkaeynleldieepceekvlverksaddlvasikdgrleeqvsrlkrngykkpillveg.. 97 
                 +D re++s ++   l+ + +e+++++l++gdy ++   +++               +++erks++dlv+s+++grl++q++ +   +yk+p+ll+e   
  KKY14988.1 706 VDVREFRSALPSL-LHGRSMEIIPCQLTVGDY-VL---SPT---------------ICIERKSVRDLVQSFRNGRLFNQAETMLQ-YYKHPMLLIEFdq 783
                 799*********9.9*****************.**...9**...............*****************************.***********86 PP

                 -GGGTT.......................THHH.HHHHHHHHHHHH.S-EEEEESSHHHHHHHH CS
       ERCC4  98 ldqykrknknsrnkqykakvrq.......inrktiesaLvqlqldf.gvsilttesanetaewl 153
                 ++++     ++          +        ++k+++s+Lv l+l f ++++++++s+ +tae+ 
  KKY14988.1 784 NKSFTLDPFADLT--------SsssalkiPDSKDLQSKLVLLTLSFpRLKVIWSSSPYQTAEIF 839
                 5555544333322........1233355677779***************************986 PP

>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.3e-05      0.38       2      66 ..     475     548 ..     474     564 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.3e-05
                 B-TTS--B-GGGHHHHH.....HHHHHHH...S-S--EEEEE---S---HHHHHHHHHHHHHHHHHHHHH.TTS CS
        OmpA   2 FapgsseLtpkaksald.....kiaellk...kpeqkitveGhtdaagseernweLSqkRAeaVanylqn.egv 66 
                 Fa  s++L ++ ++ l+     +i ++l+    p+++ +v+G  +a  +++++   +++RA +Va+ l + ++v
  KKY14988.1 475 FAKVSASLFEENQKNLSgakdnSITSILRgkpPPNKRRRVRGGGSAGTDDRAAASSANDRAGQVAELLEEmRSV 548
                 7777888888888888888888888999997566677******999888888****************997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (932 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.52
# Mc/sec: 5421.88
//
Query:       KKY14989.1  [L=82]
Description: hypothetical protein UCRPC4_g06517 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.098   13.1   0.6       0.11   13.0   0.6    1.1  1  DUF5582   Family of unknown function (DUF5582)


Domain annotation for each model (and alignments):
>> DUF5582  Family of unknown function (DUF5582)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.6   5.9e-06      0.11      17      70 ..      22      75 ..       5      82 .] 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.9e-06
     DUF5582 17 letetesattlqafesldtrltsnfqakdqalseklPsisskldyiiskektqa 70
                 +++tes ++ ++ +s ++     ++ak q++ +k P i+ kl  + sk+  +a
  KKY14989.1 22 PSSNTESKASDHSLHSDEQGSQGGIKAKAQDFISKGPQITDKLPEAASKDDLKA 75
                35789999999999999999999**********************999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.48
# Mc/sec: 516.11
//
Query:       KKY14990.1  [L=627]
Description: putative actin associated protein wsp1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-26   93.1   0.4    1.5e-26   92.5   0.4    1.2  1  WH1       WH1 domain
  ------ inclusion threshold ------
      0.018   14.9   2.6      0.055   13.3   2.6    1.9  1  WH2       WH2 motif
      0.057   13.4   0.1      0.081   12.8   0.1    1.2  1  DCP1      Dcp1-like decapping family


Domain annotation for each model (and alignments):
>> WH1  WH1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.4   2.5e-30   1.5e-26       4     110 ..      17     125 ..      14     126 .. 0.94

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 2.5e-30
                 S...E.EEEEEEEEEEEEEETTTTCEEEECECEEEEEEEEETTTTEEEEEEEETT..T-SEEEEEEE-SS---B-SSSSEEEEESSSSEEEEEESSHHH CS
         WH1   4 lgkkc.qtiasavaqvyladpakketWikakhagavslvkdstqnsyflrlvklq..dakvvieqeiyknleynqarqkfhtfederavvGLnFaseee 99 
                  +k++ ++ a+av+++y+a+p++ + W+++   ga+ l +d + n++ ++lv++   ++ v+++qeiy+ ++ynq+r++f  fe e++++G  F++e+e
  KKY14990.1  17 VPKASnKIQAVAVVRLYVAYPNRSK-WTYTGLQGAAVLSEDRVGNTFWVKLVDISsaGRGVIWDQEIYDTFQYNQDRTFFYSFELEECMAGFSFVDEKE 114
                 57888455578*************9.****************************988899*************************************** PP

                 HHHHHHHHHHH CS
         WH1 100 akkFakkvqea 110
                 ak+F kk++e+
  KKY14990.1 115 AKQFKKKMDER 125
                 ********986 PP

>> WH2  WH2 motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.6   9.3e-06     0.055       1      17 [.     536     553 ..     536     567 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.3e-06
                 X-TCCHHHHHHHHHH... CS
         WH2   1 ggggRgALLadIraGs.k 17 
                 ++ggR++LLa+Ira + k
  KKY14990.1 536 PAGGRDDLLASIRASGgK 553
                 689**********98733 PP

>> DCP1  Dcp1-like decapping family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.4e-05     0.081       8     115 ..      12     122 ..       6     124 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.4e-05
                 HHHHH-TTEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEETT.S-EEEEEEESSSS--EE...EEESSGGGEEEETTEEEEEETTTEEEEEEES CS
        DCP1   8 vLqrldpsiesildtashvvlYkfnessqeWektdieGtLfvvkrskepryglivlNrkslenli...edltkelelelqgeyliyrteeeevfgiWfy 103
                  ++r  p+ ++ ++  + v lY   ++ ++W+ t+++G+  + + +  + +++ +++ +s    +   +++ ++++++++  +++  + ee+  g+ f 
  KKY14990.1  12 TVRRTVPKASNKIQAVAVVRLYVAYPNRSKWTYTGLQGAAVLSEDRVGNTFWVKLVDISSAGRGViwdQEIYDTFQYNQDRTFFYSFELEECMAGFSFV 110
                 67899999999999********************************99*********888875442447788899999888888777788899****** PP

                 SHHHHHHHHHHH CS
        DCP1 104 eeedreriasll 115
                 +e++++++ + +
  KKY14990.1 111 DEKEAKQFKKKM 122
                 ******999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.59
# Mc/sec: 3224.60
//
Query:       KKY14991.1  [L=474]
Description: putative inner membrane magnesium transporter mrs2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-08   33.4   0.2    3.9e-08   32.9   0.2    1.2  1  CorA             CorA-like Mg2+ transporter protein
  ------ inclusion threshold ------
      0.077   13.0   0.2       0.15   12.1   0.2    1.4  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.2   4.4e-12   3.9e-08      93     289 ..     140     353 ..      89     357 .. 0.76

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 4.4e-12
        CorA  93 evikrlk.deggkpkspgellyrlldeivdrlfellekleeeldeledeledstkkeilrelaqlrrrlvklrralapnrevlk.......rlla.... 179
                 +++++++ +++   +  ++ l+++l +++  l+ + e +   + ++ +ele++++++ lr l+   ++l+ +++ ++  r++++       +l+a    
  KKY14991.1 140 KLRQKTDqRASTYLPYEFRALEAVLVSVTSGLESEFEGVRGPVVRVLRELEEDIDRDKLRNLLVHSKKLGSFEQKARLVRDAISdlldaddDLVAmylt 238
                 55666666667788889999****************************************************666666666666222333333335554 PP

        CorA 180 .kaddkllddedkeylrdlldeler....llemlealrerleslqdtyssllserlNrvmk...vLTvltaif.lPlTlitGiyGmNfkg.lPelewsy 268
                  +a++k   ++d++  + ll+  ++    ++e + +l   +++  ++  ++l+ + N +m    ++++ t  +    Tl +G+yGmN k+ l e ++ +
  KKY14991.1 239 eNAHGKPRQEDDHQEVEMLLESYHKicdeIVEASGNLITNIRNTEEIVKAILDANRNSLMLldlKFSIGTLGLaAG-TLFAGLYGMNLKNfLEESDHAF 336
                 5444444444444556666666666777899999999999999999**************633369*******566.************7455555555 PP

        CorA 269 gypfvlllglmallailllfw 289
                      ++ ++++ l++++ ++
  KKY14991.1 337 ----SVVSLVCFGLSGIVAVY 353
                 ....55677888888777766 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   1.7e-05      0.15      47      96 ..     309     363 ..     269     367 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.7e-05
  Phage_holin_3_6  47 allalllllval.alala.a...lwlaalivaavllvlagvlalvglkklkkakp 96 
                      + la+++l+++l  + l+ +   +  a+ +v +v++ l g++a+ g+kklk++++
       KKY14991.1 309 LGLAAGTLFAGLyGMNLKnFleeSDHAFSVVSLVCFGLSGIVAVYGMKKLKQVQR 363
                      334444444444223333335677789999*********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.51
# Mc/sec: 2776.66
//
Query:       KKY14992.1  [L=223]
Description: putative tetraspanin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-06   28.5   7.2    1.6e-06   28.1   7.2    1.2  1  Tetraspanin    Tetraspanin family
  ------ inclusion threshold ------
       0.01   15.5   0.6       0.04   13.6   0.6    1.9  2  DUF716         Family of unknown function (DUF716)
      0.017   15.1   8.8       0.84    9.7   1.9    2.5  2  MARVEL         Membrane-associating domain
      0.077   12.9   2.5       0.15   12.0   2.3    1.7  1  PMP22_Claudin  PMP-22/EMP/MP20/Claudin family


Domain annotation for each model (and alignments):
>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   7.2   3.5e-10   1.6e-06       6     227 ..      10     201 ..       5     205 .. 0.66

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 3.5e-10
                  XXXXXXXXXXXXXXXXXXXXXXX......XXX.....................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin   6 fffnllfwligivllavGvwlrl......khaeaalacllsesaedpailaillivvGvllfllgflGcigalkenkcllltfsllllvlfllelaag 97 
                  + + +l    g ++lav++ ++            + a++l  s + p  + ++  ++ +++fl++f G+i+++ +    +  ++++l  +f + ++++
   KKY14992.1  10 LGLDVLAAAGGGIILAVSLITQKnmkavqT--IDTVATDLLLS-TTPLKAGVVNAIFIFITFLVSFPGLIATRSRVFPKIHGYMVMLSGVFTMIIGLI 104
                  556677888899999998555435544321..11111111111.11111222233344599************************************* PP

                  XXXX--HHH........HHHHHHHHHHHHHHHHHHTHHHHHHHHHHT---SSHH..HHGSSTT-SSSCGCC..................S--HHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin  98 ilgfvfsdkargkvseiinnaievkyrddldlkkcqnlldslqkklsCCGvnsykDwsdnpsrencsvPesCclptpnqayleasksiytegCidklv 195
                  i+  +++ +          +++ + + +++     +n  + lq+ +sCCG   y+++         ++P+   +++   ++ +a       gCi  ++
   KKY14992.1 105 IWESTLRTR----------SNLLTLWSKQS-----DNIQSLLQQRFSCCG---YTNF--------TTPPFI--QDS---TCTNALVAANLGGCIGPFS 171
                  ******999..........45534444433.....3577789********...5666........677877..222...13344455559******** PP

                  HHC--XXXXX.XXXX.XXXXXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin 196 nwiksnlkllgggvaalgliqlvgillslilc 227
                  ++ +  + ++  +v+++++  + g+ll  i c
   KKY14992.1 172 SFANPYMDIIFTAVFGIVA--IDGMLLLAIAC 201
                  **********555555555..54544444443 PP

>> DUF716  Family of unknown function (DUF716)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.6   8.8e-06      0.04      39      87 ..      62     110 ..      55     144 .. 0.85
   2 ?   -1.6   0.0      0.42   1.9e+03      91     108 ..     200     217 ..     193     221 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.8e-06
      DUF716  39 lvvalsllsalleallpksfllelvrsvllilqGtWflqmGfiLytpsl 87 
                 + +++++l+++ ++++ +s +   +++++++l G+  + +G+i++ + l
  KKY14992.1  62 IFIFITFLVSFPGLIATRSRVFPKIHGYMVMLSGVFTMIIGLIIWESTL 110
                 6799*****************************************9873 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.42
      DUF716  91 gClldeeegegsvkcdse 108
                  Cll+ +++++ +++ ++
  KKY14992.1 200 ACLLKDRKDKERYRWIDQ 217
                 699999999999999875 PP

>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.9   0.00019      0.84      48     108 ..      63     125 ..      22     164 .. 0.66
   2 ?    8.6   1.8   0.00038       1.7      59     100 ..     158     200 ..     135     203 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00019
      MARVEL  48 vavfsflyalfllvlylfknsaftsilwplidl.ivdalaallwlvafialaaglrdisca........f 108
                 + +++fl+++ +l++       ++s+ +p i+  +v +  ++ ++++ i++   lr+ s+         +
  KKY14992.1  63 FIFITFLVSFPGLIA-------TRSRVFPKIHGyMVMLSGVFTMIIGLIIWESTLRTRSNLltlwskqsD 125
                 234555555555555.......555556555551455556666889*****9999997776665555540 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00038
      MARVEL  59 llvlylfk.nsaftsilwplidlivdalaallwlvafialaag 100
                 l++++l+     f s++ p++d+i++a++ ++ + +  +la++
  KKY14992.1 158 LVAANLGGcIGPFSSFANPYMDIIFTAVFGIVAIDGMLLLAIA 200
                 4555555566699******************999998888875 PP

>> PMP22_Claudin  PMP-22/EMP/MP20/Claudin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.3   3.3e-05      0.15      78     129 ..      58     110 ..      27     125 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.3e-05
                    HHHHHHHHHHHHHHHHHHHHTGGGTTTSSHHHHHHHHHHHHH.HHHHHHHHHH CS
  PMP22_Claudin  78 ilsiilgilslivavlqlkclkkgerfklaGiiflvsgLcvl.vgasiYtsri 129
                    ++ +i+ ++ ++v + +l  ++   + k+ G ++++sg++++ +g++i+ s  
     KKY14992.1  58 VVNAIFIFITFLVSFPGLIATRSRVFPKIHGYMVMLSGVFTMiIGLIIWESTL 110
                    6667*************************999999988876527999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1425.78
//
Query:       KKY14993.1  [L=209]
Description: putative mads box transcription factor mcm1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-21   73.6   0.1    9.1e-21   73.1   0.1    1.2  1  SRF-TF    SRF-type transcription factor (DNA-binding and dime


Domain annotation for each model (and alignments):
>> SRF-TF  SRF-type transcription factor (DNA-binding and dimerisation domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.1   5.1e-25   9.1e-21       1      48 []      61     108 ..      61     108 .. 0.98

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 5.1e-25
      SRF-TF   1 kIeneraRqvtFsKRrnGLfKKAsELsvLcgvevavvvfspngklytf 48 
                 +I ++++R++tFsKR++G++KKA+ELsvL+g++v ++v+s++g +ytf
  KKY14993.1  61 FIADKSRRHITFSKRKAGIMKKAYELSVLTGTQVLLLVVSETGLVYTF 108
                 699********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1420.37
//
Query:       KKY14994.1  [L=394]
Description: putative o-sialoglycoprotein endopeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-87  292.4   0.0    4.7e-87  292.1   0.0    1.0  1  Peptidase_M22  Glycoprotease family


Domain annotation for each model (and alignments):
>> Peptidase_M22  Glycoprotease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.1   0.0   2.6e-91   4.7e-87       2     270 ..      28     328 ..      27     329 .. 0.95

  Alignments for each domain:
  == domain 1  score: 292.1 bits;  conditional E-value: 2.6e-91
                    CEXEEEEEEEEE....S.SSSHHHHHHHHHHHHHHHHHHHHHHHTSTGGGEEEEEEEEESS-HHHHHHHHHHHHHHHHHCT--EEEEEHHHHHHHC CS
  Peptidase_M22   2 vlanvvasqkelhakyG.GvvPelasraHserllplieealaeaglsledldaIavtkgPGlftgLrvGvsfAkglalalnkPlvgVnhleahala 96 
                    vl+n+ +++   h+++G G++P++++ +H+ ++++l+++al++a+++++d+d+I++tkgPG++ +L+ ++ +A+ l++ +nkPlvgVnh+++h+++
     KKY14994.1  28 VLSNIRHTY---HSPPGaGFLPKDTALHHRSWVVRLVKQALQQANVTVNDVDCICYTKGPGMGAPLQSVAVAARLLSVLWNKPLVGVNHCIGHIEM 120
                    677777766...8*********************************************************************************** PP

                    CHCTSECSSCEEEEESSSTEEEEEECTTEEEEEEEESSSEHHHHHHHHHHHHT..SSCCH..HHHHHHCTC.S.......EETTEEE.CHHHHHHH CS
  Peptidase_M22  97 arleekeefPvvllvsGghtqvylvkegryeilgetlddaagealdkvarllglpypggp..kieklakeg.kkiefprplkgldfsfsGlktavl 189
                    +r  ++ ++Pvvl+vsGg+tqv++++ +ry+i+getld+a+g++ld++ar+lg+p+++ p  +ie+lak+g + ie+p+++kg+d+sfsG+ +++ 
     KKY14994.1 121 GRTITGATNPVVLYVSGGNTQVIAYSTQRYRIFGETLDIAVGNCLDRFARTLGIPNDPFPgyNIEQLAKKGkHFIELPYAVKGMDCSFSGILAYID 216
                    **879889*****************88*****************************755555*********888*****************99999 PP

                    HHHST.T..............................HHHHHHHHHHHHHHHHHHHHHHHHHHCTBSEEEEESGGGGXHHHHHCHCCHHHHTTSEE CS
  Peptidase_M22 190 kelek.e..............................vedlaasfqeavvdhlvekteralklpkakelvilGGvaankrLrealeeeaeelglkl 254
                    +++++                                +edl+ s+qe+v+++lve+tera+++ ++++++++GGv++n+rL+e++  +a++++ ++
     KKY14994.1 217 ELAKRmHnglltipdpdfeppsssstddtpaplicltKEDLCHSLQETVFAMLVEITERAMAHVGSSQVLVVGGVGSNERLQEMMGIMARDRNGNV 312
                    99966525799***************************************************************************99999***** PP

                    EXXXHHHHSSXCHHHH CS
  Peptidase_M22 255 iiPplkyctdnaamia 270
                    +++++++c dn++mia
     KKY14994.1 313 YATDERFCIDNGIMIA 328
                    ***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2867.76
//
Query:       KKY14995.1  [L=444]
Description: putative saccharopine dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-89  299.2   0.0    6.8e-89  298.5   0.0    1.3  1  Sacchrp_dh_C     Saccharopine dehydrogenase C-terminal domain
    5.9e-23   81.5   0.1    9.7e-23   80.9   0.1    1.3  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
    0.00099   19.0   0.4     0.0023   17.8   0.2    1.7  2  NAD_binding_10   NAD(P)H-binding
  ------ inclusion threshold ------
      0.081   12.5   0.1        0.3   10.7   0.0    1.9  2  IlvN             Acetohydroxy acid isomeroreductase, NADPH-bi
      0.088   12.9   0.0       0.16   12.1   0.0    1.5  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> Sacchrp_dh_C  Saccharopine dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.5   0.0   1.9e-92   6.8e-89       1     265 []     119     437 ..     119     437 .. 0.92

  Alignments for each domain:
  == domain 1  score: 298.5 bits;  conditional E-value: 1.9e-92
                   BTTTBHHHHHHHHHHHCCCHTTBECCCCCCCCCCCCECCCCESTTCEEESS-HHHHHHHCCSEEEEEETTEEEECTCCCSGCC.TCEEECCCCCEEC CS
  Sacchrp_dh_C   1 GldPGidhllamkaidevkakggkiesflsycgglpapeasdnplgYkfsWspegvlreltnpakvlengqvkevpgsellkgakkpiyilpglsle 97 
                   GldPG+dhl a+  i++v+++ggki+sflsycgglpape s nplgYkfsWs +gvl++l+n+a+++++g+v++v g el+++a kp++i+pg++l+
    KKY14995.1 119 GLDPGLDHLWAVAEIERVHKAGGKIKSFLSYCGGLPAPEDSGNPLGYKFSWSSRGVLLALRNSASFYQGGKVVNVVGPELMATA-KPYHIYPGYALV 214
                   9********************************************************************************977.89********** PP

                   TTECEEECTHCHHHHHHC.SCSEEEEEEEEEHHHHHHHHHHHTTT--SCEC..C..........................................C CS
  Sacchrp_dh_C  98 gypnrdslpyeelyglpeaktlfrgtlrypgfsellkslkelGllseepke..e..........................................a 150
                   +ypnrds+ y+e y++pea+t++rgtlry+gf+e++k l+++G+ls+++++  +                                          +
    KKY14995.1 215 AYPNRDSTVYKERYNIPEAETVIRGTLRYQGFPEFVKVLVDIGFLSDDEQSflKepitwkeatqkilgasssseadllwaissktsfkdndvkdrlT 311
                   ************************************************9777647999*******************99999999999998888541 PP

                   CCC...HH...ST.T...C.EHHHHHHHHCCHHCCCCTTEEEEEEEEEEEEEE.TTSEEEEEEEEEEEEE..EHH...SSSHHHHHHHHHHHHHHHH CS
  Sacchrp_dh_C 151 lka...wl...se.g...e.spldvlaalLekklalepgerDlvvlqhefgie.sdgkkkekktstlvgy..dee...gssamaktvGvpaaiaakl 230
                     a   wl   s+ +   + +pld+l+a Le+k+++e+gerDlv+lqh+f+ie +dg++ e+k++tl++y  + +   g+samak vGvp+++a+k+
    KKY14995.1 312 --AglkWLgifSDsKiipKgNPLDTLCASLEEKMQYEEGERDLVILQHKFEIEnKDGSH-ETKSVTLCEYgaQ-TgsgGYSAMAKLVGVPCGVAVKQ 404
                   ..3355666663232334557*************************************8.9999*****9843.3468******************* PP

                   HHTTSCTSSEEEEGGGS.CHHHHHHHHHHHHHC.T- CS
  Sacchrp_dh_C 231 ildgkikkrGvvtpeelvdpeiyeplleeLeke.Gi 265
                   +l+g+i++rG+++p   ++++i++pl++eL ++ Gi
    KKY14995.1 405 VLNGTISDRGILAP---MNSKINDPLMKELVEKyGI 437
                   **************...8999*********998776 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.1   2.7e-26   9.7e-23       5     130 .]       5     115 ..       2     115 .. 0.95

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 2.7e-26
                      --SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-EEEE CS
  Sacchrp_dh_NADP   5 GaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppissldvlkaCietgvhyvd 98 
                      G+G+v +++++ l++ + +  e+tva+r++e++++l +    + +++i+ld+ +++a L+a++++++lv++l+p++++++v+k +i+++ h+v+
       KKY14995.1   5 GSGFVTKPTLDILSDAG-I--EVTVACRTLESAKKLSE--GVKLAKPISLDVTDDKA-LDAVVAQHELVISLIPYTFHATVIKSAIRNKKHVVT 92 
                      99*************97.6..8**********999986..556689***********.************************************ PP

                      SS-BCGCCSCHCCSHHHHHTHHHHHHCTSEEE CS
  Sacchrp_dh_NADP  99 tsiskeertnyalreavlklkekakeagvtav 130
                      ts+         +++a+l+l+++ak+ag+t++
       KKY14995.1  93 TSY---------VSPAMLELDQQAKDAGITVL 115
                      ***.........******************86 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   6.5e-07    0.0023       3      68 ..       6      71 ..       5     116 .. 0.81
   2 ?   -2.4   0.0       1.1   3.8e+03     113     150 ..     263     305 ..     256     313 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 6.5e-07
                    TSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCT.TTCEEEE--TT-CCHHHHHHTT-SEEEES- CS
  NAD_binding_10  3 tGkvGrllvkellargghevtalvRnpeklaeleae.eglevvegdvtdvedlaealkgadaVvsal 68
                    +G v +  ++ l ++ g+evt+  R+ e++++l++  + ++ +++dvtd ++l +++++++ V+s +
      KKY14995.1  6 SGFVTKPTLDILSDA-GIEVTVACRTLESAKKLSEGvKLAKPISLDVTDDKALDAVVAQHELVISLI 71
                    788888889999999.5***************98653666899*********************987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.1
                     HHHCCHHHHHHHHHHHHHHHH.....SSSEEEEEEE-CEE-ST CS
  NAD_binding_10 113 nkellkaylaakraaeellra.....sgldwTivrpggLtdep 150
                      +++lk+ + +k+a  ++l a      +l w i + + ++d++
      KKY14995.1 263 EQSFLKEPITWKEATQKILGAsssseADLLWAISSKTSFKDND 305
                     5678888899999999998774442236667777777776665 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.2e-05       0.3      22      83 ..      16      86 ..       5      96 .. 0.80
   2 ?   -1.9   0.0      0.58   2.1e+03     131     147 ..     393     409 ..     367     415 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.2e-05
                HHHHTT--EEEEE-TT-......HHHHHHHHTT-EEEE...HHHHHHT-SEEEE-S-HHHHHHHHHHHTGG CS
        IlvN 22 nlrdsgldvvvglregs......ksvkkAkeegfevlt...vaeavkkadvvmiliPDelqkevyeeeiep 83
                 l d+g++v+v+ r+ +      + vk Ak  +++v++   ++ +v++ ++v+ liP +++++v++++i++
  KKY14995.1 16 ILSDAGIEVTVACRTLEsakklsEGVKLAKPISLDVTDdkaLDAVVAQHELVISLIPYTFHATVIKSAIRN 86
                689********9987553444445788999999999762225567899******************99986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.58
                 T----EEEEEEE-SSS- CS
        IlvN 131 gkGvpaliaveqdasgk 147
                   Gvp+ +av+q  +g+
  KKY14995.1 393 LVGVPCGVAVKQVLNGT 409
                 56899999998877765 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.3e-05      0.16      19      81 ..       5      69 ..       1     103 [. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.3e-05
                  S-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-E...EEEGCGHHHHHHT-SEEEE CS
  Shikimate_DH 19 GaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeie...alkleelkellaeadvvis 81
                  G G + + ++  L+++g++ v+va Rtle ak+l e +k ++     +++ + l++++a+ ++vis
    KKY14995.1  5 GSGFVTKPTLDILSDAGIE-VTVACRTLESAKKLSEGVKLAKPIsldVTDDKALDAVVAQHELVIS 69
                  888899999999******9.***************9996654430004444458888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2754.18
//
Query:       KKY14996.1  [L=422]
Description: putative snf1 kinase complex beta-subunit gal83 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-29   99.8   0.2    1.4e-28   98.9   0.2    1.4  1  AMPK1_CBM      Glycogen recognition site of AMP-activated pro
      6e-25   87.3   1.0    2.6e-24   85.3   0.3    2.5  2  AMPKBI         5'-AMP-activated protein kinase beta subunit, 
     0.0092   15.4   7.1      0.019   14.3   7.1    1.5  1  U79_P34        HSV U79 / HCMV P34
  ------ inclusion threshold ------
        1.4    7.9   6.0          2    7.4   6.0    1.2  1  Membralin      Tumour-associated protein
        7.5    6.3  10.7         11    5.7  10.7    1.2  1  zf-CpG_bind_C  CpG binding protein zinc finger C terminal dom


Domain annotation for each model (and alignments):
>> AMPK1_CBM  Glycogen recognition site of AMP-activated protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.2   3.8e-32   1.4e-28       1      84 [.     111     196 ..     111     197 .. 0.95

  Alignments for each domain:
  == domain 1  score: 98.9 bits;  conditional E-value: 3.8e-32
   AMPK1_CBM   1 vptvikWkggGkkVyvtGsfnnWkkkipLk..ksekdfsvilkLpeGthqykFiVDgewrvdpdlptatdeeGnlnNvievkesdl 84 
                 vp+v++Wk+ G+kVyvtG+f nW kk++L+  k ++ +sv l+Lp+Gth++kFiVDge++ +++lpta d ++ l+N+iev+++d+
  KKY14996.1 111 VPIVVEWKQPGDKVYVTGTFANWAKKYKLHrnKDGRGMSVALQLPPGTHHVKFIVDGEMKNSDHLPTAVDFNNVLVNYIEVSADDI 196
                 799***************************7666699*********************************************9886 PP

>> AMPKBI  5'-AMP-activated protein kinase beta subunit, interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0         1   3.7e+03       3      20 ..     170     193 ..     168     218 .. 0.55
   2 !   85.3   0.3   7.2e-28   2.6e-24       4      75 .]     283     350 ..     280     350 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1
      AMPKBI   3 keppklPph..Lekvllnk....s 20 
                 k+ ++lP    +++vl+n      
  KKY14996.1 170 KNSDHLPTAvdFNNVLVNYievsA 193
                 566777765114688888744432 PP

  == domain 2  score: 85.3 bits;  conditional E-value: 7.2e-28
      AMPKBI   4 eppklPphLekvllnkssdsaassaddssvlpiPnhvvLnHLltssikngvlavgcttRYrkKyvTtvlYkP 75 
                  pp+lP  L k +ln        ++dd+svl  Pnh vLnHL+tssikngvla ++ttRY+kKyvTt++YkP
  KKY14996.1 283 GPPTLPLFLGKSILNG----VLPMKDDASVLTLPNHTVLNHLATSSIKNGVLATSVTTRYKKKYVTTIMYKP 350
                 69**************....899************************************************9 PP

>> U79_P34  HSV U79 / HCMV P34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   7.1   5.4e-06     0.019     165     223 ..     352     410 ..     310     416 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.4e-06
     U79_P34 165 kqkekrkvedidkkkedekrkeeerkksdedkssdkkeel.dedPkekrqkyhetkrrle 223
                    ek+kv d + +++ e+r+++ rkks++++++d+ +e+ +++P+e  q   et+ + +
  KKY14996.1 352 GLEEKQKVRDEQLQQQREQREQQ-RKKSQSQEKPDQLQEIvEQQPQEPLQATEETEAEQQ 410
                 5679********99999999875.678889999999888615679999999777765544 PP

>> Membralin  Tumour-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   6.0   0.00055         2      62     145 ..     315     411 ..     308     422 .] 0.43

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00055
   Membralin  62 nCldhvkddwprdGilrveivrnlkksev.........llessekeeesekk..isisenkkvllkeasvtllee..svlevsleaeeeekessslk 145
                 + l+h+  + +++G+l   +++  kk++v         l+e+++ ++e+ ++  ++ ++++k  +++++ ++l+e  ++++ +  + +ee+e+++ +
  KKY14996.1 315 TVLNHLATSSIKNGVLATSVTTRYKKKYVttimykptgLEEKQKVRDEQLQQqrEQREQQRKKSQSQEKPDQLQEivEQQPQEPLQATEETEAEQQH 411
                 6789999999*************99998866655555432222222222211001111111111111111111110011111112222222222222 PP

>> zf-CpG_bind_C  CpG binding protein zinc finger C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  10.7    0.0031        11      15      80 ..     345     413 ..     332     419 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0031
  zf-CpG_bind_C  15 ewqsspsvaeeenkkklekirke..qeeakkklkelekklkkLeeliekakklslkeeeeeeed.eeds 80 
                    ++  +p+ +ee++k + e+++++  q+e ++k+++ ++k ++L+e++e++ + +l+ +ee+e++ ++ +
     KKY14996.1 345 TIMYKPTGLEEKQKVRDEQLQQQreQREQQRKKSQSQEKPDQLQEIVEQQPQEPLQATEETEAEqQHKQ 413
                    55667888888888887777655114555666777788899**************99998875533333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2742  (0.152937); expected 358.6 (0.02)
Passed bias filter:                      908  (0.0506442); expected 358.6 (0.02)
Passed Vit filter:                       168  (0.00937029); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.36s 00:00:01.17 Elapsed: 00:00:00.52
# Mc/sec: 2437.30
//
Query:       KKY14997.1  [L=816]
Description: putative molecular chaperone [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-34  116.2   0.0    1.8e-33  115.3   0.0    1.5  1  ABC1      ABC1 family
  ------ inclusion threshold ------
      0.011   15.1   0.1       0.29   10.4   0.0    2.2  2  Pkinase   Protein kinase domain


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.0     2e-37   1.8e-33       2     118 ..     489     605 ..     488     606 .. 0.96

  Alignments for each domain:
  == domain 1  score: 115.3 bits;  conditional E-value: 2e-37
        ABC1   2 elgkkleeiFaefdeePiAaASiaqVhrAklk.sgeeVavKvqrpgvkkriksDlellkllakllkkflkelrldleelvdefskslleEldferEAkn 99 
                 +lg +++eiF ef+e+PiAaASi+qVh+A+lk +g++VavKvq+pgv+ +i+sDl++l++l+++ + ++k+l   l++++++++++l++E+d+ rEA+ 
  KKY14997.1 489 NLGPNWREIFGEFKEKPIAAASIGQVHEATLKsTGQKVAVKVQYPGVATSISSDLNNLSILLTASRLLPKGLY--LDKTIANARTELAWECDYVREAEC 585
                 6899****************************88**************************************9..************************ PP

        ABC1 100 aekfrenfaklke.vkvPkv 118
                  ++f+e +a+ ++ + vP++
  KKY14997.1 586 GNRFQELLADETDvFVVPRI 605
                 *********99986888987 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.012   1.1e+02      11      31 ..     510     530 ..     502     547 .. 0.86
   2 ?   10.4   0.0   3.3e-05      0.29      72     151 ..     612     689 ..     591     698 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.012
                 SSEEEEEEEETTTTEEEEEEE CS
     Pkinase  11 sfGkVykaveketgkivAvKk 31 
                 s G+V +a+ k+tg++vAvK+
  KKY14997.1 510 SIGQVHEATLKSTGQKVAVKV 530
                 78******************8 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 3.3e-05
                 EEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHH.HHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSS CS
     Pkinase  72 elylvleyveggeladllerkgslseeeakkiakqile.gleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakeless 151
                 + ++ +e++eg+ ++++      +++e+   i +qil+  l+ + + +++  D    N+L++ ++++l + DFG ++e+ ++
  KKY14997.1 612 KEVITMEFMEGKGVTKVQD----FTQEQKDWIGTQILRlCLREIMEFNFMQTDPNWTNFLYNnSTNKLELLDFGASREYPQK 689
                 457899****997777765....99999999999*998689*********************77888**********99775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (816 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.49
# Mc/sec: 5002.86
//
Query:       KKY15013.1  [L=389]
Description: putative glutamine-serine-proline rich [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-24   86.5   0.5    2.9e-24   85.7   0.5    1.4  1  CVNH             CVNH domain
    4.6e-06   26.4   9.6      1e-05   25.3   9.6    1.6  1  Rick_17kDa_Anti  Glycine zipper 2TM domain
    1.7e-05   24.7   6.5    3.2e-05   23.8   6.5    1.4  1  Gly-zipper_Omp   Glycine zipper
     0.0028   17.5   2.5     0.0038   17.0   2.5    1.1  1  TAF4             Transcription initiation factor TFIID compon
     0.0086   16.1   3.2      0.015   15.3   3.2    1.4  1  FAM60A           Protein Family FAM60A
  ------ inclusion threshold ------
      0.015   15.0   0.3      0.031   14.0   0.3    1.4  1  Phage_holin_2_4  Bacteriophage holin family, superfamily II-l
      0.077   13.1   4.7       0.17   12.1   4.7    1.6  1  Bacteriocin_IIc  Bacteriocin class II with double-glycine lea
       0.19   11.3  36.3       0.38   10.3  36.1    1.5  1  SR-25            Nuclear RNA-splicing-associated protein
       0.22   11.3  14.8       0.56   10.0  14.8    1.6  1  Gly-zipper_YMGG  YMGG-like Gly-zipper
       0.39   11.4  12.4        0.8   10.3  12.4    1.5  1  FXMRP1_C_core    Fragile X-related 1 protein core C terminal
       0.44   10.6   7.3       0.76    9.8   7.3    1.4  1  CDK2AP           Cyclin-dependent kinase 2-associated protein
       0.55    9.0   8.3       0.73    8.6   8.3    1.1  1  Apt1             Golgi-body localisation protein domain
       0.66    9.8  12.9          2    8.3  12.9    1.7  1  Gly-zipper_OmpA  Glycine-zipper domain
       0.75    9.0   4.1        1.1    8.5   4.1    1.2  1  Zip              ZIP Zinc transporter
        1.1    9.8  23.5    3.9e+02    1.5  20.3    3.1  2  Dehydrin         Dehydrin
        1.1    7.7  16.1        1.6    7.3  16.1    1.1  1  TFIIF_alpha      Transcription initiation factor IIF, alpha s
        1.6    8.4  15.6        2.8    7.6  15.6    1.3  1  CCDC106          Coiled-coil domain-containing protein 106
        1.7    7.3   6.1        2.7    6.7   6.1    1.2  1  Presenilin       Presenilin
        2.1    6.8   9.3        2.7    6.5   9.3    1.1  1  Macoilin         Macoilin family
        2.7    6.0   6.5        3.9    5.5   6.5    1.1  1  Hid1             High-temperature-induced dauer-formation pro
        3.5    7.1   5.5         27    4.3   5.5    2.1  1  DUF533           Protein of unknown function (DUF533)
        5.1    5.3   7.5        6.8    4.9   7.5    1.1  1  CDC45            CDC45-like protein


Domain annotation for each model (and alignments):
>> CVNH  CVNH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.5   3.5e-27   2.9e-24       1     101 []     288     386 ..     288     386 .. 0.96

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 3.5e-27
                 GGGSEEEEEEETT...EEEEEEE-TTSSEEEEEEEGGGTEEEETTEEEE...-BGGGSEEEEEEE--E....EEEEEEET.SS-EE.EEEEEGGGTEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
        CVNH   1 FskscrdirldahgetiLhAecrredgsyqsssidLnkcigndnGslrw...gnfsesarnvrleeggeeeqvLeaeler.dgewvesseinLderIsN 95 
                 Fs+sc++i+ld++  + L A+c++ dg+++ ss++Ln++++n+ G+l+w   gnf++ arnvrl ++g   +vLeae+ + dg w+ ++ ++L+erI+N
  KKY15013.1 288 FSSSCTSITLDGD--FDLIASCSTLDGRSKLSSVSLNNVLANEWGTLKWargGNFGACARNVRLVDHG---TVLEAEVGTgDGGWRVNH-VQLNERITN 380
                 9*********666..*************9999*******************99************777...*******999*****999.********* PP

                 ETTEEE CS
                 xxxxxx RF
        CVNH  96 nnGtLe 101
                 +nG+L+
  KKY15013.1 381 DNGELK 386
                 ****96 PP

>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   9.6   1.2e-08     1e-05       1      35 [.     156     187 ..     156     191 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.2e-08
  Rick_17kDa_Anti   1 vGaliGAaaGgvaGaaigggggrvlGavvGAaaGa 35 
                      +Gal+G+a+G+ aG+++   +++ +Gav+GA+aG+
       KKY15013.1 156 MGALAGGAVGAFAGHKV---NHGFIGAVGGAIAGS 187
                      69***************...999***********6 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   6.5     4e-08   3.2e-05       4      44 ..     155     196 ..     154     198 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 4e-08
  Gly-zipper_Omp   4 aiGAaaGaliGgavggrgtGaliGAavGaavGg.liGaamdk 44 
                     + GA+aG+++G+ +g+ +   +iGA+ Ga++G  l  ++ dk
      KKY15013.1 155 VMGALAGGAVGAFAGHKVNHGFIGAVGGAIAGSkLEDHYKDK 196
                     68******************************8444455555 PP

>> TAF4  Transcription initiation factor TFIID component TAF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   2.5   4.6e-06    0.0038     125     204 ..     194     272 ..     189     320 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.6e-06
        TAF4 125 kekeeeekrqakRieereglekaakdrskgedeeekklkaketakevq.keedekarhraANatAlaavgeprkKkyswms 204
                 k+k+++ek+++kR     gl +  +++s+   + ++  +   +  e + +  + k+ h +A a+A++++g p  K +s  +
  KKY15013.1 194 KDKKKKEKKEKKRKSKWGGLARRGSSSSSSSSSSSSSSSTS-SDDERKhRHRKHKKHHSKAPAAAAVMAG-PTLKHQSQSQ 272
                 78888999999888777777776664333333333333333.344444477778889*************.8888775433 PP

>> FAM60A  Protein Family FAM60A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   3.2   1.9e-05     0.015     101     169 ..     187     253 ..     153     281 .. 0.52

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.9e-05
      FAM60A 101 kkieekfekklkkkkklkktkakasdasssereaspassdsasedsdesedeeekkrkkllekkkkrsa 169
                 +k e++++ k+kk+kk+kk+k+k    +++ +++s++ss+s s++s++s+d+e+k+r++ ++kk++++a
  KKY15013.1 187 SKLEDHYKDKKKKEKKEKKRKSKWGGLARRGSSSSSSSSSS-SSSSSTSSDDERKHRHR-KHKKHHSKA 253
                 44445555555555555554444444444433333333333.33333333333222222.222333333 PP

>> Phage_holin_2_4  Bacteriophage holin family, superfamily II-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.3   3.8e-05     0.031      18      64 ..     160     203 ..     154     211 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.8e-05
  Phage_holin_2_4  18 ggGavvsfaGflasselialvGlavAliGlLvnWyYkreanRRaaae 64 
                       gGav++faG+     +i+ vG a+A  G  ++ +Yk ++ + +++e
       KKY15013.1 160 AGGAVGAFAGHKVNHGFIGAVGGAIA--GSKLEDHYKDKKKK-EKKE 203
                      79********************9765..99999999966543.3333 PP

>> Bacteriocin_IIc  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   4.7    0.0002      0.17      29      59 ..     155     186 ..     137     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
  Bacteriocin_IIc  29 vggalaGaatGaatlgilgaa.vGavvGavvG 59 
                      v+galaG a+Ga +++ + ++ +Gav+Ga++G
       KKY15013.1 155 VMGALAGGAVGAFAGHKVNHGfIGAVGGAIAG 186
                      78999999999998888876537888888887 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  36.1   0.00047      0.38      48     105 ..     194     254 ..     183     288 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00047
       SR-25  48 eeerskekkkkkrrrss...ssssssssssssssssssssssddrkkrgkkkdkkkkkkkk 105
                 +++++kekk kkr+++    +   sssssssssssssss+ssdd++k+ ++k+kk+++k  
  KKY15013.1 194 KDKKKKEKKEKKRKSKWgglARRGSSSSSSSSSSSSSSSTSSDDERKHRHRKHKKHHSKAP 254
                 2234444444444443311133445555555555555556666665555556666655543 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  14.8   0.00069      0.56       8      40 ..     155     186 ..     151     189 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00069
                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Gly-zipper_YMGG   8 aiGAaaGAvvGaliGsgggkGAaiGAaaGalaG 40 
                      + GA aG +vGa +G +  +   iGA+ Ga+aG
       KKY15013.1 155 VMGALAGGAVGAFAG-HKVNHGFIGAVGGAIAG 186
                      445666666666666.44445599999999998 PP

>> FXMRP1_C_core  Fragile X-related 1 protein core C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  12.4   0.00098       0.8      46     129 ..     191     274 ..     180     281 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00098
  FXMRP1_C_core  46 DeesgessssslggsrsysgRGrGrRGagatsgkygtnseasnaseteseakdelsdwslageeeegekesevrsrrqedrrrr 129
                    D+ ++++++++++ +r+ +  G +rRG++++s++++++s++s++s++e++++ + +++++++   +++ + ++  ++q++++r+
     KKY15013.1 191 DHYKDKKKKEKKEKKRKSKWGGLARRGSSSSSSSSSSSSSSSTSSDDERKHRHRKHKKHHSKAPAAAAVMAGPTLKHQSQSQRH 274
                    44445566666677788899***********99889999999999999998888888877777777777888888887776665 PP

>> CDK2AP  Cyclin-dependent kinase 2-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   7.3   0.00094      0.76      36     113 ..     191     260 ..     183     277 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00094
      CDK2AP  36 efynyqqqreqkeqqprveItaisssrgssagsgassgsnsasdyatss.gslrkrdrqqskqqsaaalAyaneykqvl 113
                 ++y+ ++++e+ke++ + +   +   rgss   ++ss+s+s+s+++tss  + ++r+r++ k+++++a A+a    +v+
  KKY15013.1 191 DHYKDKKKKEKKEKKRKSKWGGLAR-RGSS---SSSSSSSSSSSSSTSSdDERKHRHRKH-KKHHSKAPAAA----AVM 260
                 5555555555555555555554443.4444...233333333444444413344455555.44444444444....333 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   8.3    0.0009      0.73     319     368 ..     196     253 ..     172     320 .. 0.49

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0009
        Apt1 319 esdeesessssss............ssssssassssssssrssslelrlkptsstsssssse 368
                 ++++e++++   +            s ssss+ssssssss++ss ++r+++  +++++ s++
  KKY15013.1 196 KKKKEKKEK---KrkskwgglarrgS-SSSSSSSSSSSSSSTSSDDERKHRHRKHKKHHSKA 253
                 111111111...11123445554422.22222222222222222222222211111111111 PP

>> Gly-zipper_OmpA  Glycine-zipper domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  12.9    0.0025         2       9      41 ..     155     187 ..     152     189 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0025
  Gly-zipper_OmpA   9 alGAaaGAavGaitGsaGtGAaiGAasGavaGl 41 
                      ++GA+aG avGa++G+  +   iGA  Ga+aG+
       KKY15013.1 155 VMGALAGGAVGAFAGHKVNHGFIGAVGGAIAGS 187
                      8***************99999**********97 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.1    0.0013       1.1     102     174 ..     199     272 ..     155     308 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0013
         Zip 102 k...ksshkektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseee 174
                 k   ++++k k+ + a+  ss s++++s s++++++s + ++h + +++++ sk+  ++ +   +  +++++s  +
  KKY15013.1 199 KekkEKKRKSKWGGLARRGSSSSSSSSSSSSSSSTSSDDERKHRHRKHKKHHSKAPAAAAVMAGPTLKHQSQS--Q 272
                 1233333344444444444444444444444444444444444444444444444444444444444444432..3 PP

>> Dehydrin  Dehydrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5  20.3      0.47   3.9e+02      32      94 ..     157     225 ..     123     253 .. 0.57
   2 ?    1.5   0.3      0.47   3.9e+02      52      95 ..     256     296 ..     242     300 .. 0.61

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.47
    Dehydrin  32 aalgtgalasttgettea...ttgtgaaaGaaaaag.ggqlqptreeeehkt..geelrrsgssSSssS 94 
                 +al +ga+++ +g+++++   +  +ga+aG++ +   +++++++++e++ k+  g+  rr +ssSSssS
  KKY15013.1 157 GALAGGAVGAFAGHKVNHgfiGAVGGAIAGSKLEDHyKDKKKKEKKEKKRKSkwGGLARRGSSSSSSSS 225
                 344455555555555433344555566666665555544444444444455454666666443333332 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.47
    Dehydrin  52 gtgaaaGaaaaagggqlqptreeeehktgeelrrsgssSSssSE 95 
                 +++ +a   + + ++q q++r++ +h +  +   s ssS +s  
  KKY15013.1 256 AAAVMA---GPTLKHQSQSQRHQPQHPQHPIFPGSFSSSCTSIT 296
                 222223...24458899999999888888888888888877655 PP

>> TFIIF_alpha  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  16.1    0.0019       1.6     330     417 ..     193     275 ..     186     294 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0019
                  XXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  TFIIF_alpha 330 egklskkkkkakklkkkkkekdkkdSddeedsddsDideedsvslvkakKkkekkkeekvdsnessagnsrparpspeqkdskskrka 417
                    + +kk+kk+kk k+k ++  ++ S+++++s +s + + +s+    ++K+++  +++k   +++ a+++  a p+ ++++ +s+r++
   KKY15013.1 193 YKDKKKKEKKEKKRKSKWGGLARRGSSSSSSSSSSSSSSSTSSD--DERKHRH--RKHKKHHSKAPAAAAVMAGPTLKHQS-QSQRHQ 275
                  34567788888888888888888888666666666665555544..4555444..55555567777777788888887665.666654 PP

>> CCDC106  Coiled-coil domain-containing protein 106
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  15.6    0.0034       2.8      51     115 ..     190     252 ..     181     259 .. 0.45

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0034
     CCDC106  51 eaekeskskksekkaeksesessssseesddsssdssessessegsstekkkkkkkkkekkkkkk 115
                 e++ + k+kk++k+++ +++    + + s +sss ss ss+ss +s + ++k+++ +k+kk+ +k
  KKY15013.1 190 EDHYKDKKKKEKKEKKRKSKWGGLARRGSSSSSSSSSSSSSSSTSS-DDERKHRH-RKHKKHHSK 252
                 3344444444444444444444444555544444344444444443.33333333.344444444 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   6.1    0.0033       2.7     231     295 ..     197     262 ..     183     310 .. 0.38

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0033
  Presenilin 231 evaeseeeeeaekkkeeasesskeeeseeesseksaqsse.seeeseeesseaessaeesseekes 295
                 +++e++e+++++k    a++ s++++s+++ss++s++ss+ +++++++++++ +s+a + ++  + 
  KKY15013.1 197 KKKEKKEKKRKSKWGGLARRGSSSSSSSSSSSSSSSTSSDdERKHRHRKHKKHHSKAPAAAAVMAG 262
                 122222222222222222222222222222222111111111111111111111111111111111 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   9.3    0.0033       2.7     312     381 ..     189     254 ..     178     321 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0033
    Macoilin 312 veesvkskssssssssnknskkasagsagssnssskkhsessksvtsssssknskkqklpaGkssaalkd 381
                  e++ k+k++ ++++  k+ k++ +g a  ++sss +  +ss+s +ss+ss++++k++    k+++++  
  KKY15013.1 189 LEDHYKDKKKKEKKE--KKRKSKWGGLARRGSSSSSS--SSSSSSSSSTSSDDERKHRHRKHKKHHSKAP 254
                 556666666555444..34444444444444444433..3344444455555556665543332222222 PP

>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   6.5    0.0047       3.9     586     674 ..     187     276 ..     170     287 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0047
        Hid1 586 snesarldsideeeeenssessriee.srsesrspslsevpelksslaitddeskaereksatessssqavsqlremsekarakesaest 674
                 s+++ + ++++++e+++++++s+    +r++s+s s+s+ ++  ss +  d+ ++ +r+++++ s++++a+  +++++ k++++++ +++
  KKY15013.1 187 SKLEDHYKDKKKKEKKEKKRKSKWGGlARRGSSSSSSSSSSSSSSSTSSDDERKHRHRKHKKHHSKAPAAAAVMAGPTLKHQSQSQRHQP 276
                 555444455555555555555555440455555554444444444444444444444455555555555555445555554444444443 PP

>> DUF533  Protein of unknown function (DUF533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   5.5     0.033        27       8      54 ..     152     216 ..     149     296 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.033
      DUF533   8 aggllglllGskkgrklgkkalklGglAalGg.lAykayqnwqanqq..................e 54 
                  +g++g+l G++    ++++ ++ G + a+Gg +A ++++++ ++++                  +
  KKY15013.1 152 DRGVMGALAGGAV-GAFAGHKVNHGFIGAVGGaIAGSKLEDHYKDKKkkekkekkrkskwgglarR 216
                 5677777777777.4455555555555554431455555544333331112333333333333330 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   7.5    0.0083       6.8     143     208 ..     196     272 ..     183     297 .. 0.36

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0083
       CDC45 143 ddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesddddersrkrrrse...........psakklrrqlkke 208
                 ++++e++e++++++      ++++s+++++s+s+++++s+dd++++r+r++++            +  +l++q++++
  KKY15013.1 196 KKKKEKKEKKRKSKWGGLARRGSSSSSSSSSSSSSSSTSSDDERKHRHRKHKKhhskapaaaavMAGPTLKHQSQSQ 272
                 11111111111111111111111111111111222222333333333333333334455544442222333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1898  (0.105862); expected 358.6 (0.02)
Passed bias filter:                      773  (0.0431145); expected 358.6 (0.02)
Passed Vit filter:                       170  (0.00948185); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.88u 0.35s 00:00:01.23 Elapsed: 00:00:00.53
# Mc/sec: 2229.60
//
Query:       KKY15014.1  [L=882]
Description: putative d-lactate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.4e-50  169.6   0.1    1.9e-49  168.6   0.1    1.5  1  FAD-oxidase_C  FAD linked oxidases, C-terminal domain
    2.2e-37  127.9   0.0    5.3e-37  126.7   0.0    1.7  1  FAD_binding_4  FAD binding domain
    0.00043   19.8   0.1        1.2    8.6   0.0    2.5  2  Epimerase      NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.6   0.1   3.1e-53   1.9e-49       2     234 ..     338     563 ..     337     564 .. 0.97

  Alignments for each domain:
  == domain 1  score: 168.6 bits;  conditional E-value: 3.1e-53
                    -SEEEEEEEEESSHHHHHHHHHHHHHHT---SEEEEE-HHHHHHHHHTS-SSTTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT-EEEEE.. CS
  FAD-oxidase_C   2 pearavalvafpsfeaavkavreiaqagiipaalelmdkkaldlveatkgakkglpdeeealllvefegddeeeaeeelealveaileatgaadvl 97 
                    p + +va  afp++++a+++v +++q+gi++aa+e++d++ + +++a   +  + ++ e ++l+++f+g++   ++e+++ lv +i+e  g ++++
     KKY15014.1 338 PMNDRVAISAFPTIRSAADCVEKVVQQGIQVAAMEIIDETGMSCINASGAT--ARKWAETPTLFFKFTGTK-SSVQEQIA-LVKQIAELSGSKEFV 429
                    66789**********************************************..999***************.99******.*************** PP

                    ........ETGGGGGGGGHHHHHHHHHCTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHEEEEEEEEEETTEEEEEEEEEEE..--TT--THHHH CS
  FAD-oxidase_C  98 vaqdeaeaealwkaRkaalpylrdallkagvavlseDtsvPvsrladlvrdikalldkyglevvlfgHagdgnlhlyilfdladeaeeeraeklvd 193
                    +a+d+++ae lw aRk +l+ +++ +++a   ++++D++vP+srl+++++ +k+ +++ gl   ++gHagdgn+h +i f +   +e++ ae +v+
     KKY15014.1 430 FAKDQQQAEDLWGARKTMLWGAQKNKRQATDKPWVTDVAVPISRLPEIMELTKKDIAECGLPGGIVGHAGDGNFHSLIFFSE---DERNIAENVVH 522
                    ********************************************************************************66...799999999** PP

                    HHHHHHHHTT-----------------------THHHHHHH CS
  FAD-oxidase_C 194 evvdlavelgGsisgEHGvGldkkaylerekgeeglalmrr 234
                    ++v++a+++ G+++gEHGvGl k++yl +e g+e++++mr+
     KKY15014.1 523 RMVERAIQMEGTVTGEHGVGLVKRDYLVQELGQEAVDTMRK 563
                    ***************************************96 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   0.0   8.9e-41   5.3e-37       2     138 ..     165     300 ..     164     301 .. 0.96

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 8.9e-41
                    EEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTC.SCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTC CS
  FAD_binding_4   2 aavvrpeseeevaaalrlaneaglpvlvrGgGssllgqav.atggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgi 96 
                     a+v p+s+e+vaa++r+++++++pv+++++G+sl g+   +++g+ +d+sr+n+i++i +++  ++v++Gv+ ++l+  la+++l+++++pg g 
     KKY15014.1 165 VAIVMPGSTEDVAAIVRICHRRRIPVVAFSAGTSLEGNFAnTRRGICVDFSRMNKIITIHKDDLDVVVQPGVRHEELNDILAQQQLFFPPDPGPG- 259
                    589*********************************776669***********************************************999988. PP

                    GSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4  97 pgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrl 138
                     +++GG+i t+ +G+++ +yG+++++v +l+vvladG+++++
     KKY15014.1 260 -AMIGGMIGTGCSGTNAFRYGTMKQWVISLTVVLADGTIIKT 300
                    .78************************************997 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1    0.0002       1.2       1      25 [.     583     607 ..     583     613 .. 0.93
   2 !    8.6   0.0    0.0002       1.2      83     192 ..     625     754 ..     610     789 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0002
                 EEEETTTSHHHHHHHHHHHHCTSEE CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyev 25 
                 +lVtG++G i s++++++l  gy+v
  KKY15014.1 583 VLVTGISGTIASHIAEQFLLYGYKV 607
                 79*****************999998 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0002
                 SHHHHHHHHTHHHHHHHHHHHHH.TCTEEEEEEEGGGGT...............SCSSSS..BSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH..T CS
   Epimerase  83 dpadfieknlqgtlnlleaarka.gvkrllflsSsevYG...............kdaeqp..keettltgplkpnspYaaaKlageklveayaaqy..g 161
                 d++++i+ ++ +++n l aa ++  vkr+l lsSs + G               + + +   +e     gp+   + Y aa +  e++++++ ++    
  KKY15014.1 625 DRSKVIDPTVTINTNALRAAAETpSVKRFLLLSSSFTTGvhqigeaphydasswNTTAIKaaDEMRPPFGPYDGLTMYTAALTIREQQMWEFVEKEtpH 723
                 567899999************998999************999988888887776333332346777778888999999999999999999998888455 PP

                 -EEEEEEESEEESTTS-TTS.TTSHHHHHHHH CS
   Epimerase 162 lnaiilrlfnlyGprngege.vsrvipalirk 192
                 + + +l+++ + G   ++ e ++ + +  +r+
  KKY15014.1 724 FVYNALIVCAVLGRT-FDLEhQKAFPTGNVRS 754
                 888889999999998.7777444444444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (882 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.54
# Mc/sec: 4921.99
//
Query:       KKY15015.1  [L=412]
Description: putative dihydrolipoamide succinyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-81  271.4   0.1    7.7e-81  271.0   0.1    1.2  1  2-oxoacid_dh     2-oxoacid dehydrogenases acyltransferase (ca
    2.3e-16   59.4   3.8    4.9e-16   58.3   3.8    1.6  1  Biotin_lipoyl    Biotin-requiring enzyme
     0.0026   17.5   0.2      0.043   13.7   0.0    2.3  2  Biotin_lipoyl_2  Biotin-lipoyl like
     0.0051   17.5   0.3       0.65   10.7   0.1    2.4  2  HlyD_3           HlyD family secretion protein
     0.0058   16.6   1.8        0.2   11.6   0.0    2.9  3  RnfC_N           RnfC Barrel sandwich hybrid domain
  ------ inclusion threshold ------
      0.033   14.1   0.3      0.069   13.1   0.3    1.6  1  GCV_H            Glycine cleavage H-protein
       0.15   11.4   5.9        1.4    8.2   0.1    2.2  2  FAM76            FAM76 protein
        1.2    9.2   8.6        2.6    8.1   8.5    1.5  1  DUF2052          Coiled-coil domain containing protein (DUF20
          2    7.1   4.9        2.8    6.6   4.9    1.1  1  Presenilin       Presenilin
        2.4    6.9   5.5          3    6.6   5.5    1.1  1  DUF4551          Protein of unknown function (DUF4551)
        2.8    6.5   5.0        3.7    6.1   5.0    1.1  1  Ndc1_Nup         Nucleoporin protein Ndc1-Nup
        3.3    7.9   7.6        4.7    7.4   7.6    1.3  1  GAGA_bind        GAGA binding protein-like family
        3.6    6.3  12.9        4.9    5.9  12.9    1.3  1  Mitofilin        Mitochondrial inner membrane protein


Domain annotation for each model (and alignments):
>> 2-oxoacid_dh  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.0   0.1   5.6e-84   7.7e-81       3     233 .]     179     411 ..     177     411 .. 0.98

  Alignments for each domain:
  == domain 1  score: 271.0 bits;  conditional E-value: 5.6e-84
                   XXXXXXXXXXXXXXXXXXXXXX.XXXEEEEEEEEE-HHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHH-GGGG-EE.EES..EEEE--SS- CS
  2-oxoacid_dh   3 eeervplsgirkaiakrlteskqeiphftlsdevdvtallelrkelkekeakeekakltlldflikavalAlkefPelnasvdeee..keivvkkhv 97 
                    e+rv+++++r +ia+rl++s+++++ +t+++evd+++l+e+rk ++++  k++ +kl +++ + +a++lA+ke P++nas+++ +  ++iv++++v
    KKY15015.1 179 GENRVKMNRMRLRIAERLKQSQNTAASLTTFNEVDMSNLMEFRKLYRDDVLKKTGVKLGFMSAFSRACVLAMKELPAVNASIEGPNggDTIVYRDYV 275
                   6899**********************************************98888***************************87777789******* PP

                   -EEEE--------EEEE--GGG--HHHHHHHHHHHHHHHTTT---GGGTSS-SEEEE---------------TT-SEEEEE---.B--TTSTT-HT- CS
  2-oxoacid_dh  98 niGvAvatprGLlvPviknadkkslleiakelkelaekaregklkpedleggtftisNlGmlGvtsftPiinppqvaIlgvgrikerpvvkegelvv 194
                   +i+vAvat++GL++Pv++na++++++ei++e+++l +kar++kl+ ed+ ggtftisN G++G+ ++tPiin pq+a+lg++++kerpvv++g++++
    KKY15015.1 276 DISVAVATEKGLVTPVVRNAESLNMVEIEQEIANLGKKARDNKLTIEDMAGGTFTISNGGVFGSLMGTPIINLPQTAVLGLHATKERPVVVNGKIEI 372
                   ************************************************************************************************* PP

                   --EEEEEEEEETTT--HHHHHHHHHHHHHTT-HHXXXXX CS
  2-oxoacid_dh 195 rkvmtlslsaDHRvidGaeaarFlntlkkllenpeelll 233
                   r++m+l l++DHR++dG ea+ Fl ++k+++e+p ++ll
    KKY15015.1 373 RPMMYLALTYDHRLLDGREAVTFLVKVKEFIEDPRRMLL 411
                   ************************************985 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   3.8   3.5e-19   4.9e-16       3      73 .]      21      92 ..      19      92 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 3.5e-19
                   EEESSSEEEEEE..ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl  3 iksPmiGesveeg.vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73
                   +k+P+++es++eg   ++ ++ Gd V++++ +a++e++K  + ++ap +G++ke lv+e dtv+vg+ ++k+
     KKY15015.1 21 VKVPEMAESITEGtLKQFSKQIGDFVEQDEEIATIETDKIDVSVNAPTSGTIKEFLVSEEDTVTVGQEIVKM 92
                   89*******************************************************************986 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.15     2e+02      10      37 ..      32      59 ..      26      62 .. 0.83
   2 !   13.7   0.0   3.1e-05     0.043       3      31 ..      62      90 ..      56      93 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.15
  Biotin_lipoyl_2 10 sGrVaqlnVkdGqrVkaGdvLaelDsra 37
                      G+++q   + G+ V++   +a++++++
       KKY15015.1 32 EGTLKQFSKQIGDFVEQDEEIATIETDK 59
                     67777888888*************9876 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 3.1e-05
  Biotin_lipoyl_2  3 vsIaapvsGrVaqlnVkdGqrVkaGdvLa 31
                     vs+ ap+sG++++ +V + + V  G+ ++
       KKY15015.1 62 VSVNAPTSGTIKEFLVSEEDTVTVGQEIV 90
                     99***********************9775 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.033        46       8      35 ..      33      59 ..      29      64 .. 0.83
   2 !   10.7   0.1   0.00047      0.65       2      31 ..      64      93 ..      63      98 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.033
      HlyD_3  8 Gvvvelnveegevvqagdelleiippdt 35
                G++++ + + g++v++ +e+++i  +d+
  KKY15015.1 33 GTLKQFSKQIGDFVEQDEEIATIE-TDK 59
                88899999***************8.454 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00047
      HlyD_3  2 lrApvdGvvvelnveegevvqagdelleii 31
                ++Ap +G+++e  v+e++ v+ g+e+++ +
  KKY15015.1 64 VNAPTSGTIKEFLVSEEDTVTVGQEIVKMA 93
                89***********************99865 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00014       0.2      46      79 ..      40      74 ..      29      75 .. 0.88
   2 ?    3.5   0.1      0.05        69      43      61 ..      74      92 ..      73      97 .. 0.86
   3 ?   -1.4   0.0       1.6   2.2e+03      50      91 ..     273     314 ..     265     323 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
      RnfC_N 46 vkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVka 79
                 + gd V++ + ia+ e+  + + v a++sGt+k+
  KKY15015.1 40 KQIGDFVEQDEEIATIETdKIDVSVNAPTSGTIKE 74
                578***********9987788************86 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.05
      RnfC_N 43 kplvkvgdkVlkGqkiaea 61
                + lv+++d+V+ Gq i + 
  KKY15015.1 74 EFLVSEEDTVTVGQEIVKM 92
                579************9775 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.6
      RnfC_N  50 dkVlkGqkiaeaegfvsapvhasvsGtVkaiekrlvahgsgv 91 
                 d+V     +a+++g+v+  v    s + ++ie+  ++ g+++
  KKY15015.1 273 DYVDISVAVATEKGLVTPVVRNAESLNMVEIEQEIANLGKKA 314
                 677777788888888888888888888999998888887775 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3     5e-05     0.069      39      73 ..      40      74 ..      15      90 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5e-05
                --TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEE CS
       GCV_H 39 pevgtkvkkgeslaavEsvKaasevyapvsGevve 73
                ++ g+ v+++e++a++E+ K    v ap sG++ e
  KKY15015.1 40 KQIGDFVEQDEEIATIETDKIDVSVNAPTSGTIKE 74
                678999***************************88 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1     0.001       1.4     206     259 ..       8      62 ..       1      80 [. 0.83
   2 ?    4.6   2.3     0.012        17     141     242 ..     102     206 ..      87     218 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.001
       FAM76 206 skksldsnssdhlvavtqLkeeias.lkkqleqkdqellekdkkitelkaellek 259
                 ++ s++s  +d +v+v ++ e i++   kq +++  +++e+d +i+++ +++++ 
  KKY15015.1   8 ATFSTSSVRNDTMVKVPEMAESITEgTLKQFSKQIGDFVEQDEEIATIETDKIDV 62 
                 333788999**************9735699999999************9998875 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.012
       FAM76 141 eeee.krskskkkkskskkskkskekskekkaskkkskkh.kkrss..rlevskleeeklaeekesnetskksldsnssdhlvavtqLkeeiaslkkql 235
                   ee k+++s+++ s s+k +k+ke +k + + k+++    + ++s   + +sk     ++ee +++  + k++  n  ++ v++++++ +ia++ kq 
  KKY15015.1 102 AGEEpKEPASEEQPSASEKPEKEKEPEKPAPEPKEEKPAPkEDKPSppPKPSSKPAA-PKKEEPKKDAPKDKEAFGNRGENRVKMNRMRLRIAERLKQS 199
                 333334444444444444444444433333322222221112222232444455442.23333333344445778889999*************99998 PP

       FAM76 236 eqkdqel 242
                 ++   +l
  KKY15015.1 200 QNTAASL 206
                 8766655 PP

>> DUF2052  Coiled-coil domain containing protein (DUF2052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   8.5    0.0019       2.6      31     128 ..      39     163 ..      36     212 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0019
     DUF2052  31 eqlvGqflteeerkkardksds........keeslseiLlrreeeaaaaerleaqqeel...........eeeeeeeeeeeeeeeeeeeeeeedekeka 110
                  + +G f++++e   a  ++d+        ++ +++e+L+++e+   + + + +  e +           e              ++ee+++ +ek+++
  KKY15015.1  39 SKQIGDFVEQDEEI-ATIETDKidvsvnapTSGTIKEFLVSEEDTVTVGQEIVKMAEGEggektageepkE-------------PASEEQPSASEKPEK 123
                 56789999887744.3333333456999999999**********999999988888885555454433331.............333333333333333 PP

     DUF2052 111 ea....................................deedeeeeeekeekee 128
                 e+                                    +              e
  KKY15015.1 124 EKepekpapepkeekpapkedkpspppkpsskpaapkkE--------------E 163
                 332333333333333444333333333333222222210..............1 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.9    0.0021       2.8     241     326 ..      99     238 ..      69     239 .. 0.46

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0021
  Presenilin 241 aekkkeeasesske.eeseeesseksaqsse.seeeseeesseaessaeesseekeseessesseeeeeeeeeeeeses.................... 317
                 ++++ ee +e  +e + s +e++ek+++ ++   e +ee+ +++e++++ + +++++ ++ +++e ++++ + +e                        
  KKY15015.1  99 EKTAGEEPKEPASEeQPSASEKPEKEKEPEKpAPEPKEEKPAPKEDKPSPPPKPSSKPAAPKKEEPKKDAPKDKE---Afgnrgenrvkmnrmrlriae 194
                 222222222222220222222222222221122222222222222222222222222222222211111111111...122344455667778888888 PP

  Presenilin 318 ...................................eergvkLGL 326
                                                    +++gvkLG+
  KKY15015.1 195 rlkqsqntaaslttfnevdmsnlmefrklyrddvlKKTGVKLGF 238
                 88888888888888888888888888888888877778999996 PP

>> DUF4551  Protein of unknown function (DUF4551)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.5    0.0021         3     154     253 ..      96     192 ..      42     224 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0021
     DUF4551 154 ekeektvskksqlslslselrklseeekeelesekalkslrsasrplPesl.lsrapkppsspkeppssslskderdskseessqvelrlgsvlsrlll 251
                 e  ekt+ ++ + ++s  e+ + se+ ++e+e+ek+ ++ +++  p P++   s  pkp+s+p+ p++++++kd  + k++  ++ e r++   +r+ l
  KKY15015.1  96 EGGEKTAGEEPKEPAS-EEQPSASEKPEKEKEPEKPAPE-PKEEKPAPKEDkPSPPPKPSSKPAAPKKEEPKKDAPKDKEAFGNRGENRVKM--NRMRL 190
                 3445566666666655.4555555666666666666666.7888888887745555566677777777777666665555444433333333..33333 PP

     DUF4551 252 rs 253
                 r 
  KKY15015.1 191 RI 192
                 22 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   5.0    0.0027       3.7     365     484 ..     102     238 ..      76     261 .. 0.45

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0027
    Ndc1_Nup 365 apknkasapvkelprlsksplkkk.ddeifgnsltaeaspkssssskegvekalsslakspgqspsptarlsprarkll.ekaksrllskeqkealses 461
                 a ++ ++++++e+p+ s++p+k+k  ++    +  +e +p++++ +++ + k  s++a+  +++  p + + p++++++ +++++r++ +  + ++ e 
  KKY15015.1 102 AGEEPKEPASEEQPSASEKPEKEKePEKPA--PEPKEEKPAPKEDKPSPPPKPSSKPAAPKKEE--PKKDA-PKDKEAFgNRGENRVKMNRMRLRIAER 195
                 444455566666666666666665422211..22233333333333333333333333333322..22221.222222202233333332222222222 PP

    Ndc1_Nup 462 tikkk...................vekelaq.llkspligylF 484
                   +++                   ++k +++ +lk++++   F
  KKY15015.1 196 LKQSQntaaslttfnevdmsnlmeFRKLYRDdVLKKTGVKLGF 238
                 2222222223334444466666666666666666655455555 PP

>> GAGA_bind  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   7.6    0.0034       4.7      64     194 ..      43     187 ..       2     214 .. 0.46

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0034
   GAGA_bind  64 maflrrdaalaere..kvlnvlpvnka.......kallee...dnalaalqmlr...plesqlqeaeapelekeevasselveesavvekeeaakkrqq 147
                  +f+ +d+ +a  e  k+   ++vn           + ee   + +++ ++m++    ++++ +e+  +e  +ee+ s++  +e++   +++a +++++
  KKY15015.1  43 GDFVEQDEEIATIEtdKI--DVSVNAPtsgtikeFLVSEEdtvTVGQEIVKMAEgegGEKTAGEEP--KEPASEEQPSASEKPEKEKEPEKPAPEPKEE 137
                 566666666665441122..2222222333443222222211111222233322322112222222..2222333333333333333333455566666 PP

   GAGA_bind 148 gkrpkepka...kkakkaarkpkeegedl.alkkakrsksekksvdlving 194
                 + +pke k+    k++ ++++pk+e+ ++ a+k  k++ +++ +  + +n+
  KKY15015.1 138 KPAPKEDKPsppPKPSSKPAAPKKEEPKKdAPK-DKEAFGNRGENRVKMNR 187
                 666777777555555555666666665442332.33333444444444444 PP

>> Mitofilin  Mitochondrial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  12.9    0.0036       4.9      38     121 ..      81     172 ..      33     212 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0036
   Mitofilin  38 ksvPyseevvdylleedpplae.....klkeisklqvsavsevtkeskepkeekkkeks...ekqssassevaeeeaeatkkaaeakaqqpk 121
                  +v  ++e+v+++++e  ++       ++   ++ + s+  e +ke ++p +e+k+ek+   e+++s + ++++++a ++k++++  a ++k
  KKY15015.1  81 DTVTVGQEIVKMAEGEGGEKTAgeepkEPASEEQPSASEKPEKEKEPEKPAPEPKEEKPapkEDKPSPPPKPSSKPAAPKKEEPKKDAPKDK 172
                 45778999999999998544447876677777777777777788888888888888888666333333333333333333333333322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1124  (0.0626917); expected 358.6 (0.02)
Passed bias filter:                      622  (0.0346924); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.54
# Mc/sec: 2305.78
//
Query:       KKY15016.1  [L=97]
Description: putative lyr family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-08   32.9   1.6    7.8e-08   32.3   1.6    1.3  1  Complex1_LYR  Complex 1 protein (LYR family)


Domain annotation for each model (and alignments):
>> Complex1_LYR  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   1.6   4.3e-12   7.8e-08       3      58 ..       2      58 ..       2      59 .. 0.92

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 4.3e-12
  Complex1_LYR  3 vLsLYRalLRearkfpdyn.treyfrrriRdeFrknkhvtDpekieellkkgreeLe 58
                  v sLYR+ L+ +  ++  +  ++  + +iR  F++nkhv+D +  ++l+++ +++Le
    KKY15016.1  2 VASLYRRALKLSLDWSIQRnLWRGQAVYIRSLFDANKHVRDARLQRQLFAETEKLLE 58
                  679*********9999877777777*****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.49
# Mc/sec: 598.50
//
Query:       KKY15017.1  [L=132]
Description: putative histone h2a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-21   75.0   2.6    4.9e-21   74.2   2.6    1.4  1  Histone_H2A_C  C-terminus of histone H2A
    1.1e-16   61.4   0.0    1.4e-16   61.0   0.0    1.1  1  Histone        Core histone H2A/H2B/H3/H4
    9.5e-06   25.8   0.0    1.3e-05   25.4   0.0    1.2  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a


Domain annotation for each model (and alignments):
>> Histone_H2A_C  C-terminus of histone H2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   2.6   8.1e-25   4.9e-21       1      35 []      93     127 ..      93     127 .. 0.96

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 8.1e-25
  Histone_H2A_C   1 EELnkLLggVTIAqGGVLPnIhkvLLpkktkkkkk 35 
                    EELnkLLg+VTIAqGGVLPnIh++LLpkkt+k  k
     KKY15017.1  93 EELNKLLGHVTIAQGGVLPNIHQNLLPKKTAKPGK 127
                    9******************************9875 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   2.4e-20   1.4e-16      52     129 ..      14      90 ..       7      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 2.4e-20
                 HHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHH CS
     Histone  52 rkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArr 129
                 +  q+++ + + ++p+ Rv+r ++k     +r+ a a+++l+++lE+l +e++e+A+++a+++K+ +i p+++qlA+r
  KKY15017.1  14 KSAQSRSSKAGLAFPVGRVHRLLRK-GNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 90 
                 667999999***************9.9999***********************************************9 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.2e-09   1.3e-05       3      65 .]      27      89 ..      25      89 .. 0.97

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.2e-09
                   XXHHHHHHHHHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF  3 LPiarvkkImksdpdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65
                   +P+ rv +++++ + a+++   A++++a ++e  + e+++ A   + ++k+  i + h++lA+
     KKY15017.1 27 FPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAI 89
                   9***********************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 870.42
//
Query:       KKY15018.1  [L=140]
Description: putative histone h2b [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-21   75.6   1.0    5.8e-21   75.2   1.0    1.2  1  Histone        Core histone H2A/H2B/H3/H4
    4.7e-05   23.6   0.0    0.00011   22.4   0.0    1.6  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
    0.00027   21.4   0.0    0.00045   20.6   0.0    1.3  1  TFIID_20kDa    Transcription initiation factor TFIID subunit 
  ------ inclusion threshold ------
      0.017   16.1   0.1      0.027   15.5   0.1    1.4  1  DUF1018        Protein of unknown function (DUF1018)
      0.053   13.2   0.1       0.13   12.0   0.1    1.6  1  RP-C           Replication protein C N-terminal domain


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   1.0   1.6e-24   5.8e-21      23     130 ..       8     114 ..       1     115 [. 0.79

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 1.6e-24
                 XXXHT...TS-SSSSB--TTT-XTTHHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSE CS
     Histone  23 akker...kasskskkkkkrryrpgtvalkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaKRvT 118
                 +kk++   ka++k    kk   ++  +    ++k++ +t++++++ ++++v++++++    d +is++a+ +l+++++++++++++eA++la ++K++T
  KKY15018.1   8 EKKPTtagKAPAKGPAEKKEAGKKTAAPASGEKKKRGKTRKETYSSYIYKVLKQVHP----DTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKST 102
                 22222354444444444444444444556677788889999****************....************************************** PP

                 EXHHHHHHHHHH CS
     Histone 119 itpkDiqlArrl 130
                 i +++iq+ +rl
  KKY15018.1 103 ISSREIQTSVRL 114
                 ********9997 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0     3e-08   0.00011       8      64 ..      55     111 ..      53     112 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 3e-08
                    HHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS
  CBFD_NFYB_HMF   8 vkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklA 64 
                    + k++k+  pd++ i++ A  +++ +v    e++a+eA++++  +k+ ti+   i+  
     KKY15018.1  55 IYKVLKQVhPDTG-ISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTS 111
                    779*****88888.*************************************9999876 PP

>> TFIID_20kDa  Transcription initiation factor TFIID subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.3e-07   0.00045       7      60 ..      57     110 ..      53     115 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.3e-07
                  HHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHH CS
  TFIID_20kDa   7 dLvqqvdsetkldedvedlLleiaddFvesvtkfacklakhRksdklevrDiql 60 
                    ++qv ++t + +    +L   ++d  e v + a+kla + k +++++r iq 
   KKY15018.1  57 KVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQT 110
                  6799************************************************95 PP

>> DUF1018  Protein of unknown function (DUF1018)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.1   7.4e-06     0.027      35      94 ..      26      85 ..       3     103 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.4e-06
     DUF1018 35 kalgfkpkskkkakrkkparkatsaqlrkiealWielakagvvrdrseaaLnafvkrqtg 94
                k++g+k +++++ ++kk++++ ++++  +i+++ ++++ +  + +r+ + Ln+fv+ ++ 
  KKY15018.1 26 KEAGKKTAAPASGEKKKRGKTRKETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFE 85
                56788888888888888888***********************************99883 PP

>> RP-C  Replication protein C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   3.5e-05      0.13      22      83 ..      48     110 ..      28     115 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.5e-05
        RP-C  22 kgvdkwqllralkeakaalgvsdralavLdaLlsftpeddlseearlivfpsNaqLs.ralgl 83 
                 k++  + +++ lk+  +  g+s+ra+++L+ +++   e+  +e ++l  +    ++s r+++ 
  KKY15018.1  48 KETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISsREIQT 110
                 33778899**************************99999999999999999988888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       880  (0.0490825); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1034.94
//
Query:       KKY15019.1  [L=453]
Description: putative cysteine protease atg4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-96  323.5   0.0    1.3e-96  323.2   0.0    1.1  1  Peptidase_C54  Peptidase family C54


Domain annotation for each model (and alignments):
>> Peptidase_C54  Peptidase family C54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.2   0.0  7.4e-101   1.3e-96       2     275 ..     111     403 ..     110     404 .. 0.95

  Alignments for each domain:
  == domain 1  score: 323.2 bits;  conditional E-value: 7.4e-101
  Peptidase_C54   2 eeflkdfesriwltYRkeFppieks......................gltsDaGWGCmlRsgQmllaqalllhllgrdwrreeksekkeeetyrki 75 
                    ++fl+dfesriw+tYR +Fp+i+ks                      g+tsD+GWGCm+RsgQ+lla+al+l  lgr+wrr      ++ +  ++i
     KKY15019.1 111 SAFLDDFESRIWMTYRAGFPAIPKSqdpsatssmtfsvrlrnlgetqGFTSDTGWGCMIRSGQSLLANALVLFRLGREWRRG-----QSPSAESNI 201
                    589*********************9********************************************************5.....34566789* PP

  Peptidase_C54  76 lslFlDkpsapfSihrlvkigk.slgkkvgeWfgPstvaqilkklvekakeeaglkvyvaqdssvvykddvkklakeskkekeekkwkpvlilvpl 170
                    +s+F+D+p+apfSihr+v++g+ ++gk++g+WfgPs++a ++++l + +  + gl+vy+++dss+vy+d++++++ +      + ++k++lil+++
     KKY15019.1 202 VSMFADDPQAPFSIHRFVQHGAsACGKHPGQWFGPSATASCIRELSS-ECASVGLNVYITNDSSDVYEDRFRSISCA------SGTMKSTLILLGT 290
                    **********************89***********************.88889******************866554......46669******** PP

  Peptidase_C54 171 rlGldkvnpkyvealkellklkqsvGiiGGrpksslYfvgvqedkliyLDPHtvqeav........edeaeseeelssfhckkprklsiskldpsl 258
                    rlG+d+v+p+y+ealk++l+++qs+Gi+GGrp+ss+Yfv++q+++l+yLDPH +++++        +++ +s+eels+ h++++r ++++++dps+
     KKY15019.1 291 RLGIDRVTPVYWEALKATLQYPQSIGIAGGRPSSSHYFVATQGSSLFYLDPHETKPYLpyrspatdDSSIYSSEELSTVHTRRLRAIHLTEMDPSM 386
                    ****************************************************************9977899************************* PP

  Peptidase_C54 259 llgflckdeedfedlve 275
                    l+gfl++de+d++d+++
     KKY15019.1 387 LIGFLIRDENDWNDWKR 403
                    ***************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 3047.65
//
Query:       KKY15020.1  [L=718]
Description: putative r3h and g-patch domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-13   49.8   0.1    6.8e-13   48.4   0.1    1.7  1  R3H        R3H domain
    3.6e-11   42.8   1.2    1.1e-10   41.2   1.2    1.9  1  G-patch    G-patch domain
    9.2e-05   22.5   0.4    9.2e-05   22.5   0.4    2.4  2  G-patch_2  G-patch domain
    0.00017   21.4   0.2     0.0013   18.6   0.0    2.4  2  Chromo     Chromo (CHRromatin Organisation MOdifier) domain


Domain annotation for each model (and alignments):
>> R3H  R3H domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.1   1.5e-16   6.8e-13       5      60 .]     541     596 ..     538     596 .. 0.96

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 1.5e-16
                 HHHHHHHHHHH-S--EEE-----SHHHHHHHHHHHHSSEEEEEE--SS-SEEEEEE CS
         R3H   5 rvekklaefvkdtgrslefppmssyeRriiHelaeaygleseSvGeepkRrvvvtk 60 
                 +v+ ++  f+k+++++l++ pm++ +Rr++H +a+a +l+s+S+G+++ R+ v++k
  KKY15020.1 541 NVHHEVKLFLKSSQETLSLTPMDNLQRRQVHVIAQALKLKSKSHGSGSARYPVLSK 596
                 68999************************************************987 PP

>> G-patch  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   1.2   2.5e-14   1.1e-10       2      43 ..     676     718 .]     675     718 .] 0.97

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 2.5e-14
     G-patch   2 sniGvkmLqkmGWkpGqGLG.kkeqGiaePieakikkdraGlG 43 
                 +n G  mL+kmGW  G+GLG + ++Gi+ P++  +k  +aGlG
  KKY15020.1 676 ENRGRAMLEKMGWTAGMGLGvSTNKGIIVPVQHVVKNTKAGLG 718
                 699**************************************98 PP

>> G-patch_2  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.4      0.88   3.9e+03      32      50 ..     420     438 ..     415     440 .. 0.60
   2 !   22.5   0.4   2.1e-08   9.2e-05      11      56 ..     672     718 .]     666     718 .] 0.87

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.88
   G-patch_2  32 gigknkkgrvkpeepkrRp 50 
                 + gk+k ++++  + +rR+
  KKY15020.1 420 RSGKTKGSTKEKSKKNRRA 438
                 5677766655555666665 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 2.1e-08
   G-patch_2  11 evPVeeFGaAlLrGMGWkegqgigknkkgr.vkpeepkrRpgrlGLG 56 
                 e+ +e+ G A+L  MGW++g g g + ++  + p++   + +++GLG
  KKY15020.1 672 EIGIENRGRAMLEKMGWTAGMGLGVSTNKGiIVPVQHVVKNTKAGLG 718
                 799********************977655558888888999999998 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.9e-07    0.0013       3      49 ..     275     317 ..     274     325 .. 0.87
   2 ?   -0.8   0.2      0.34   1.5e+03      27      44 ..     358     375 ..     356     381 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.9e-07
                 EEEEEEEEEETTEECEEEEEEETTSTGGGTEEEEGGGCSSHSHHHHH CS
      Chromo   3 VerIidhrtdkdgleleYlVKWkglpysentWEpeenlekcfqelid 49 
                 +erI+++r +++gl  +YlV   g p +e+ W ++e l ++  ++id
  KKY15020.1 275 IERILASRERDSGL--QYLVVGTGQPVDEARWITQEILNSQ--DAID 317
                 8*************..******************9988855..5554 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.34
                 STGGGTEEEEGGGCSSHS CS
      Chromo  27 lpysentWEpeenlekcf 44 
                 l+  e+  E+++n+++c+
  KKY15020.1 358 LDNLESEEEERDNIARCQ 375
                 56678889999******4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       995  (0.0554967); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.50
# Mc/sec: 4295.42
//
Query:       KKY15021.1  [L=588]
Description: putative meiotically up-regulated protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-19   69.6   2.3      8e-18   64.3   2.3    2.7  1  DnaJ           DnaJ domain
      5e-10   39.4   8.7    1.1e-09   38.3   6.1    2.5  2  zf-C2H2_jaz    Zinc-finger double-stranded RNA-binding
    5.9e-09   36.0   2.7    5.9e-09   36.0   2.7    2.6  3  zf-met         Zinc-finger of C2H2 type
    7.3e-09   35.9   5.6    0.00097   19.4   4.3    2.5  2  zf-C2H2_2      C2H2 type zinc-finger (2 copies)
    7.9e-08   32.5   2.0     0.0091   16.8   0.1    2.7  2  zf-C2H2_4      C2H2-type zinc finger
    1.4e-06   28.4   3.5      0.039   14.4   0.1    2.6  2  zf-C2H2        Zinc finger, C2H2 type
     0.0001   22.2   4.6       0.19   11.8   0.1    2.4  2  zf-C2H2_6      C2H2-type zinc finger
  ------ inclusion threshold ------
      0.068   12.9  11.8       0.99    9.1   6.0    3.0  3  zf-CpG_bind_C  CpG binding protein zinc finger C terminal dom
       0.25   12.0   2.8         20    5.9   0.0    3.0  3  zf-C2H2_3rep   Zinc finger C2H2-type, 3 repeats
        4.5    7.5  16.1        1.4    9.2  10.9    2.0  2  GAGA_bind      GAGA binding protein-like family


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   2.3   4.5e-21     8e-18       1      63 []      22     103 ..      22     103 .. 0.90

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 4.5e-21
                 HHHHHHTSSTTG-..................HHHHHHHHHHHHHHHSTTTSCCHH.HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   1 dyYeiLgvskdas..................edeIkkaYrklalkyHPDknpkdp.eaeekFkeineAyevLsdpekRkqYD 63 
                 dyYe+Lgv+++a+                     +kkaYr++al++HPD+n ++  ea++ F ei+ AyevLsdp++R++YD
  KKY15021.1  22 DYYELLGVERQATddeydhrlrllvpghytdVYRLKKAYRRKALELHPDRNYGNVeEATKLFAEIQSAYEVLSDPQERAWYD 103
                 8***********9777777777777777654444*****************99999*************************9 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   6.1     6e-13   1.1e-09       3      26 ..     333     356 ..     331     357 .. 0.95
   2 ?    0.6   0.0      0.43   7.7e+02       4      26 ..     539     561 ..     537     562 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 6e-13
                  BBTTTTBBBSSHHHHHCCTTSHHH CS
  zf-C2H2_jaz   3 YCvlCdKyFksenaldnHlkSKkH 26 
                  +Cv+C+K+Fkse+++++H+kSKkH
   KKY15021.1 333 ECVVCNKTFKSEKQFEAHEKSKKH 356
                  7*********************** PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.43
                  BTTTTBBBSSHHHHHCCTTSHHH CS
  zf-C2H2_jaz   4 CvlCdKyFksenaldnHlkSKkH 26 
                  C +C   F s   l +H++   H
   KKY15021.1 539 CTICGEEFPSKTKLFTHVREQGH 561
                  ********999988888887766 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.1        10   1.8e+04      14      19 ..     297     302 ..     295     302 .. 0.87
   2 !   36.0   2.7   3.3e-12   5.9e-09       2      25 .]     333     356 ..     332     356 .. 0.97
   3 ?   -0.2   0.0      0.83   1.5e+03       3      19 ..     539     555 ..     537     557 .. 0.79

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 10
      zf-met  14 sqlksH 19 
                 +q+++H
  KKY15021.1 297 AQMEQH 302
                 799**9 PP

  == domain 2  score: 36.0 bits;  conditional E-value: 3.3e-12
      zf-met   2 yCelCnvtfnsesqlksHlqGKkH 25 
                 +C +Cn+tf+se+q+++H ++KkH
  KKY15021.1 333 ECVVCNKTFKSEKQFEAHEKSKKH 356
                 6*********************** PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.83
      zf-met   3 CelCnvtfnsesqlksH 19 
                 C +C   f s++ l +H
  KKY15021.1 539 CTICGEEFPSKTKLFTH 555
                 ****9999998766666 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   4.3   5.4e-07   0.00097      49      93 ..     330     374 ..     322     380 .. 0.85
   2 !   15.0   0.0   1.3e-05     0.023      48      79 ..     534     565 ..     524     571 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 5.4e-07
   zf-C2H2_2  49 ekleClyCekefkslealreHmkkkgHckineeeeeekkeiekfy 93 
                 e+ eC++C+k+fks +++++H k+k+H k+ ++ ++e+k+ +++ 
  KKY15021.1 330 EHIECVVCNKTFKSEKQFEAHEKSKKHIKLLKQLKREMKHEDTMI 374
                 5689**************************998888887766655 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.3e-05
   zf-C2H2_2  48 eekleClyCekefkslealreHmkkkgHckin 79 
                 e +l C +C++ef s+ +l +H++++gH  ++
  KKY15021.1 534 EGNLACTICGEEFPSKTKLFTHVREQGHAALK 565
                 56799***********************9875 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.3   2.4e-05     0.043       2      22 ..     333     353 ..     332     355 .. 0.92
   2 !   16.8   0.1   5.1e-06    0.0091       2      21 ..     538     557 ..     537     559 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.4e-05
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkt 22 
                 +C +C+k+F+s k++  H k+
  KKY15021.1 333 ECVVCNKTFKSEKQFEAHEKS 353
                 7*****************997 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 5.1e-06
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlk 21 
                  C+iCg+ F+sk++L +H++
  KKY15021.1 538 ACTICGEEFPSKTKLFTHVR 557
                 6*****************98 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.6   2.5e-05     0.046       2      22 ..     333     353 ..     332     356 .. 0.88
   2 !   14.4   0.1   2.2e-05     0.039       3      23 .]     539     561 ..     537     561 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.5e-05
                 EETTTTEEESSHHHHHHHHHC CS
     zf-C2H2   2 kCpdCgksFkrksnLkrHirt 22 
                 +C +C+k+Fk+  ++++H ++
  KKY15021.1 333 ECVVCNKTFKSEKQFEAHEKS 353
                 6*****************886 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.2e-05
                 ETTTTEEESSHHHHHHHHHC..C CS
     zf-C2H2   3 CpdCgksFkrksnLkrHirt..H 23 
                 C++Cg+ F++k  L +H r   H
  KKY15021.1 539 CTICGEEFPSKTKLFTHVREqgH 561
                 *****************997555 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   1.6   0.00021      0.37       3      24 ..     333     354 ..     333     357 .. 0.88
   2 !   11.8   0.1   0.00011      0.19       4      20 ..     539     555 ..     538     558 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00021
   zf-C2H2_6   3 eCsvCsksFpslqaLggHkksH 24 
                 eC vC+k+F+s +  + H ks 
  KKY15021.1 333 ECVVCNKTFKSEKQFEAHEKSK 354
                 7***********9999998874 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00011
   zf-C2H2_6   4 CsvCsksFpslqaLggH 20 
                 C++C+++Fps + L +H
  KKY15021.1 539 CTICGEEFPSKTKLFTH 555
                 ***********999999 PP

>> zf-CpG_bind_C  CpG binding protein zinc finger C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.6   2.9e+03     137     154 ..      35      52 ..      31      57 .. 0.84
   2 ?    9.1   6.0   0.00055      0.99      18     100 ..     267     348 ..     251     384 .. 0.69
   3 ?    6.0   0.1     0.005       8.9      62      99 ..     512     552 ..     501     558 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.6
  zf-CpG_bind_C 137 tktYCkRLkvlCpEHtke 154
                     + Y  RL+ l p H+ +
     KKY15021.1  35 DDEYDHRLRLLVPGHYTD 52 
                    567999*********876 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00055
  zf-CpG_bind_C  18 sspsvaeeenkkklekirkeqeeakkklkelekklkkLeeliekakklslkeeeeeeedeedselsvaCvtCgheislkkalk 100
                    +++ + e+e +k+l++  k  ++a+++ ++l ++ +++    +k+++ + +  +eeee+ee +++++ Cv+C ++ +++k   
     KKY15021.1 267 QENVQSEAERQKTLREAAK-AQAARSRAANLAQMEQHVIPDWAKSQQPEDDPFSEEEEEEESDKEHIECVVCNKTFKSEKQFE 348
                    4445566666666666654.4566777777777766654433444444444444444557777899*******9998887665 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.005
  zf-CpG_bind_C  62 akklslkeeeeeeed...eedselsvaCvtCgheislkkal 99 
                    akk++++  +e++++   ++  e ++aC +Cg+e ++k+ l
     KKY15021.1 512 AKKAAATAAAEQTQKgtgSKTAEGNLACTICGEEFPSKTKL 552
                    4444333333333223458889999**********999765 PP

>> zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       3.8   6.9e+03      91     101 ..     281     291 ..     236     315 .. 0.52
   2 ?    5.2   0.4     0.019        33       1      29 [.     334     362 ..     321     398 .. 0.73
   3 ?    5.9   0.0     0.011        20       1      23 [.     539     561 ..     490     568 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.8
  zf-C2H2_3rep  91 nnsenesgvrk 101
                    +  ++++ r 
    KKY15021.1 281 REAAKAQAARS 291
                   12222222222 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.019
  zf-C2H2_3rep   1 caicldsftnkkvlethvqerhhvqfveq 29 
                   c +c  +f   k +e+h + ++h++ ++q
    KKY15021.1 334 CVVCNKTFKSEKQFEAHEKSKKHIKLLKQ 362
                   66666666666666666666666666555 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.011
  zf-C2H2_3rep   1 caicldsftnkkvlethvqerhh 23 
                   c+ic + f  k  l thv+e+ h
    KKY15021.1 539 CTICGEEFPSKTKLFTHVREQGH 561
                   66777777777777777766655 PP

>> GAGA_bind  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2  10.9   0.00077       1.4      33     178 ..     225     377 ..     196     418 .. 0.55
   2 ?    0.9   0.2      0.25   4.4e+02     139     163 ..     503     528 ..     457     552 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00077
   GAGA_bind  33 aeRdtkpllqernlal..........alsekkaalaerdaamaflrrdaalaerekvlnvlpvnkakalleednalaalqmlrp....lesqlqeaeap 117
                 ++R  ++l++++n+ l          a+ +  a + +rd    ++ + +  aer+k+l+  +    ka   +++a++  qm ++      +++q ++ p
  KKY15021.1 225 PDRRVRRLMEKENKHLredavrqfndAVRSLVAFVRKRD--PRYQENVQSEAERQKTLREAA----KAQAARSRAANLAQMEQHvipdWAKSQQPEDDP 317
                 455555555555554433333333334444455555666..566666666677777776655....444444445555555553334434444444445 PP

   GAGA_bind 118 elekeevasselveesavvekeeaakkrqqgkrpkepkakkakkaarkpkeegedlalkka 178
                  +e+ee+++s++ + ++vv +++ + ++q + ++k++k  k  k+ +   ++++++ ++ +
  KKY15021.1 318 FSEEEEEEESDKEHIECVVCNKTFKSEKQFEAHEKSKKHIKLLKQLKREMKHEDTM-IDME 377
                 66666666677777777777777777777777788888866666555444444333.2222 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.25
   GAGA_bind 139 e.eaakkrqqgkrpkepkakkakkaa 163
                 +  +akk++++k++ ++ a++++k +
  KKY15021.1 503 KlGKAKKKRAKKAAATAAAEQTQKGT 528
                 12333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1968  (0.109766); expected 358.6 (0.02)
Passed bias filter:                      644  (0.0359195); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.51
# Mc/sec: 3438.53
//
Query:       KKY15022.1  [L=642]
Description: putative ring-14 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-52  179.5   1.4    1.9e-52  179.5   1.4    1.6  2  SPX             SPX domain
  ------ inclusion threshold ------
      0.017   14.7   5.3       0.58    9.8   0.1    3.1  3  DUF2312         Uncharacterized protein conserved in bacteria
       0.12   12.8   2.4         10    6.6   0.2    3.1  3  Cep57_MT_bd     Centrosome microtubule-binding domain of Cep5
       0.26   11.9   1.4         14    6.4   0.0    3.2  3  Tn7_Tnp_TnsA_C  TnsA endonuclease C terminal
          1    9.5   3.4         16    5.6   0.3    2.7  2  IFP_35_N        Interferon-induced 35 kDa protein (IFP 35) N-
        3.8    7.8  11.4        5.1    7.4   4.9    2.8  2  OmpH            Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.5   1.4   6.3e-56   1.9e-52       1     381 [.       1     332 [.       1     335 [. 0.82
   2 ?   -3.3   0.2       2.2   6.6e+03     256     272 ..     443     456 ..     400     482 .. 0.44

  Alignments for each domain:
  == domain 1  score: 179.5 bits;  conditional E-value: 6.3e-56
         SPX   1 MKFakeLeenlv.....pEWrdaYldYkqLKKlIkkvqreleslgleaetlrellnrpedskkksse...........rtepstsaaadesgnsaadas 83 
                 MKF++++ ++l      +EW d ++ YkqLKK+Ikkvq+el+slgl+++tl  l + ++ +++ s+            + +p t + +d   ++++ +s
  KKY15022.1   1 MKFGHDYSQTLGdgefpQEWIDSAISYKQLKKCIKKVQKELQSLGLDTKTLDALWKAADGEDSLSEDerqriipkmivAMDPNTGSPQDAWLTEETRQS 99 
                 *********************************************************999998888897777777777444444444444444555555 PP

         SPX  84 ssepkdeaeslprrsplsrssrssssygglvssppsansssssddssesnpadssssssssesesssssspsllrrlfsesesreeksersyetrplra 182
                  ++ +  ++++ +  + +++       ++l ++ p+   +++ + s++++             +  ++++   ++r         + + ++ e +pl +
  KKY15022.1 100 LQKLAGLPRDPLPPAEVNGDLLALAVKEDLIPDAPYTPGHTGRNLSDDED-------------DDVGNDAVANVHRS--------SVPLEEIE-MPLIS 176
                 45444444455555555566666666677777777777777777666666.............44444444444444........23444444.6888* PP

         SPX 183 ekeFferLdseLnkvetFykakeeefterlesLrkqlealrprrikeaeerksdlyrwreifglksveaqvfessreldrgelseeardkevseelekn 281
                 ++eFf+ L +eL  +++++ a+++ + ++++ L k+l ++ +  +k   ++k+d + wreif+++ ve+++f+s re+d+                   
  KKY15022.1 177 NSEFFQVLRKELARLDELQAAEQRRLEDEIKHLGKELTTMVAAGSK---KSKTDTQAWREIFRIY-VESEIFFSARERDH------------------- 252
                 ****************************************665666...56899***********.**************................... PP

         SPX 282 gwikptksklekkrneralekvkpektlkafldsvrrdylrkenrvklkkakkklkkafvelYrgLelLKsYqeLNrtAFrKIlKKfDKvtaltaskry 380
                               ++r++ek+  +++l++f+++ +rd  +     kl+   +++ ++f++ +++L++   +qeLN+tA  KI+KKfDK+tal+a+  +
  KKY15022.1 253 --------------GTRNSEKA--SQQLENFVTTIKRDGRAA----KLTREGRIAFERFIQINNSLLQYLRFQELNQTALKKIMKKFDKRTALHAQTIL 331
                 ..............89******..****************99....99999999*****************************************9887 PP

         SPX 381 m 381
                 +
  KKY15022.1 332 P 332
                 6 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.2
         SPX 256 ssreldrgelseeardk 272
                  ++e  ++    e +d+
  KKY15022.1 443 VKSEDAETV---ELQDN 456
                 111111111...11111 PP

>> DUF2312  Uncharacterized protein conserved in bacteria (DUF2312)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1    0.0002      0.58      20      49 ..      28      57 ..      25      72 .. 0.85
   2 ?    6.2   0.2    0.0027       8.2      14      49 ..     201     237 ..     192     242 .. 0.87
   3 ?   -4.1   0.1       4.2   1.3e+04      38      48 ..     307     317 ..     303     324 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0002
     DUF2312 20 kaiaedikdvyaeaKseGfdtkvlrkivkl 49
                k++++ ik+v +e +s G+dtk+l+ + k 
  KKY15022.1 28 KQLKKCIKKVQKELQSLGLDTKTLDALWKA 57
                789999******************987665 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0027
     DUF2312  14 rleeEkkaiaedikd.vyaeaKseGfdtkvlrkivkl 49 
                 rle+E+k++ ++++  v a  K++  dt++ r+i+++
  KKY15022.1 201 RLEDEIKHLGKELTTmVAAGSKKSKTDTQAWREIFRI 237
                 9********998765277899*************997 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 4.2
     DUF2312  38 fdtkvlrkivk 48 
                 ++  +l+ki+k
  KKY15022.1 307 LNQTALKKIMK 317
                 66777888865 PP

>> Cep57_MT_bd  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.2    0.0035        10      11      53 ..      28      72 ..      22      81 .. 0.83
   2 ?   -1.9   0.0       1.6   4.9e+03      36      63 ..      75     102 ..      69     103 .. 0.83
   3 ?    4.6   0.1     0.015        45      19      36 ..     201     218 ..     181     234 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0035
  Cep57_MT_bd 11 eaLaevlkeLedEfehlklelqelaaqynald..pslgkrkRkdL 53
                 ++L++ +k+ ++E++ l l+ ++l a  +a d  +sl++ +R+ +
   KKY15022.1 28 KQLKKCIKKVQKELQSLGLDTKTLDALWKAADgeDSLSEDERQRI 72
                 589***********************9999984456677777665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.6
  Cep57_MT_bd  36 aqynaldpslgkrkRkdLaeeleelvkr 63 
                  +++ a+dp +g+ +   L+ee ++++++
   KKY15022.1  75 KMIVAMDPNTGSPQDAWLTEETRQSLQK 102
                  6888999999999999999999888876 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.015
  Cep57_MT_bd  19 eLedEfehlklelqelaa 36 
                   LedE++hl +el+++ a
   KKY15022.1 201 RLEDEIKHLGKELTTMVA 218
                  578888888888777765 PP

>> Tn7_Tnp_TnsA_C  TnsA endonuclease C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.083   2.5e+02      23      65 ..      24      68 ..      18      79 .. 0.79
   2 ?   -1.3   0.0       1.1   3.4e+03       1      32 [.     169     202 ..     169     218 .. 0.57
   3 ?    6.4   0.0    0.0046        14      39      68 ..     303     332 ..     282     333 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.083
  Tn7_Tnp_TnsA_C 23 dlseeeleelaelllerlren..pdttlrellkelDkeyslergt 65
                     +s+++l+  +++++++l++    ++tl++l k  D e+sl++ +
      KKY15022.1 24 AISYKQLKKCIKKVQKELQSLglDTKTLDALWKAADGEDSLSEDE 68
                    46677778888888888888877799*************998765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.1
  Tn7_Tnp_TnsA_C   1 eIpkvlvkNikwlhpyrried..ddlseeeleel 32 
                     eI  +l+ N ++++  r+  +  d+l++ e+++l
      KKY15022.1 169 EIEMPLISNSEFFQVLRKELArlDELQAAEQRRL 202
                     6788888888888877765444433333333333 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0046
  Tn7_Tnp_TnsA_C  39 rlrenpdttlrellkelDkeyslergtsLp 68 
                     r++e  +t l+++ k++Dk++ l++ t Lp
      KKY15022.1 303 RFQELNQTALKKIMKKFDKRTALHAQTILP 332
                     3455589****************9999886 PP

>> IFP_35_N  Interferon-induced 35 kDa protein (IFP 35) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.3    0.0054        16      10      26 ..      28      44 ..      24      50 .. 0.89
   2 ?    3.6   0.2     0.024        71       7      24 ..     197     214 ..     191     223 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0054
    IFP_35_N 10 iqLkeeiqkLeaELQet 26
                +qLk+ i+k+  ELQ++
  KKY15022.1 28 KQLKKCIKKVQKELQSL 44
                79*************86 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.024
    IFP_35_N   7 keniqLkeeiqkLeaELQ 24 
                  e+ +L++ei+ L  EL 
  KKY15022.1 197 AEQRRLEDEIKHLGKELT 214
                 699***********9996 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.5     0.033        99      22      64 ..      28      71 ..      24     102 .. 0.78
   2 ?    7.4   4.9    0.0017       5.1      13     108 ..     177     318 ..     173     328 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.033
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS...-HHHHHH CS
        OmpH 22 eqlekkfkklqaeleakekelqklqeelqkkakkle..keekeqe 64
                +ql+k +kk q+el++++ + ++l +  +++  + +  +e+++q 
  KKY15022.1 28 KQLKKCIKKVQKELQSLGLDTKTLDALWKAADGE-DslSEDERQR 71
                7999999********9999999998888643333.2445444444 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0017
                 HSHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHHHHHHHHTTTS.............................-HHHHHHHHHHHHHHHHHH CS
        OmpH  13 espegkaaqeqlekkf.......kklqaeleakekelqklqeelqkkakkl.e...........................keekeqelqkkeqelqqkq 76 
                 +s+ ++  +++l++         ++l++e++ ++kel++++++  kk+k+  +                           +e++ q+l++ ++ ++++ 
  KKY15022.1 177 NSEFFQVLRKELARLDelqaaeqRRLEDEIKHLGKELTTMVAAGSKKSKTDtQawreifriyveseiffsarerdhgtrnSEKASQQLENFVTTIKRDG 275
                 555555555544444444444448999999999999999999999888887669999999999999998888888887776666666666666666655 PP

                 HHHH.........HHHHHHHHHHHH..HHHHHHHHHHHHHHHH CS
        OmpH  77 qqka.........qelqkkqqellk..pildkinkaikevake 108
                 ++++         + + + ++ ll+  ++++  ++a+k+++k+
  KKY15022.1 276 RAAKltregriafERFIQINNSLLQylRFQELNQTALKKIMKK 318
                 5555553333444447777777777777888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1159  (0.0646439); expected 358.6 (0.02)
Passed bias filter:                      679  (0.0378716); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.50
# Mc/sec: 3870.75
//
Query:       KKY15023.1  [L=247]
Description: putative btb poz domain containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-06   26.1   0.0    1.3e-05   25.4   0.0    1.3  1  BTB       BTB/POZ domain
  ------ inclusion threshold ------
      0.031   14.1   0.0      0.039   13.8   0.0    1.1  1  DUF3731   DNA-K related protein


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.4e-09   1.3e-05      20      98 ..      43     121 ..      34     131 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.4e-09
                 TEEEEE-HHHHHHH-HHHHHHHTSTTTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC-.CGGGHHHHHHHHHHHT-HH CS
         BTB  20 gkefkahkavLaarSpyFkalftskeieessvseielddvepeafealLefiYtgeleit.seenleelLaaadllqipr 98 
                 ++ef++hk  L+a SpyF a      ++ +  + i + + +pe++e +++++Y   + +   e++  e+L   +l+ + +
  KKY15023.1  43 RTEFPVHKHLLCAKSPYFAAACDRY-FRPDLDNCIFMYEEHPEIMEFFIDWVYGHPMFVLkPESTTSEVLLKCRLYAVAN 121
                 689********************99.444444458899*****************999888899999***9999998865 PP

>> DUF3731  DNA-K related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.3e-06     0.039     100     168 ..     112     181 ..      98     224 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.3e-06
     DUF3731 100 emvrlaasLErlsve.dkielgewllkrlkkkkekaqslwalgRlgaReplygsahkvvppeeveawlek 168
                    rl+a   rl ve  k e+ + +++ lk+++ + +++++l Rl  R p+  ++ +++  +++ +w + 
  KKY15023.1 112 LKCRLYAVANRLRVEiLKNEIVDEIFQFLKANQANGAAMFCLVRLHGRIPIKCNLRSMLMDAAMDDWTNF 181
                 457999999999998569********************************************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1819.26
//
Query:       KKY15024.1  [L=292]
Description: putative tpr repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-23   82.9   0.2    7.3e-23   80.3   0.1    2.0  2  Sdh5      Flavinator of succinate dehydrogenase


Domain annotation for each model (and alignments):
>> Sdh5  Flavinator of succinate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.1   4.1e-27   7.3e-23       1      58 [.     115     172 ..     115     183 .. 0.90
   2 ?   -0.0   0.0      0.05   8.9e+02      59      73 .]     230     244 ..     227     244 .. 0.88

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 4.1e-27
                 HHHHHHHH.--SSHHHHHTTTTHHHHHTTT--HHHHHHHHHHHTS--HHHHHHHHT-. CS
        Sdh5   1 raRllyrsrrRGmlElDllLgrFaekhlatlseeeldaferLLdleDpdLldwltgrk 58 
                 raRlly+sr+RG+lE DllL++Fa++hl++++ +++++++++Ld++D+d+++w+t+  
  KKY15024.1 115 RARLLYQSRKRGILESDLLLSTFASTHLQHMTPSQMRQYDHFLDENDWDIYYWATQPP 172
                 79*****************************************************982 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.05
                 ---S-HHHHHHHHHH CS
        Sdh5  59 eepedaelaallekl 73 
                 ++p++++++++l++l
  KKY15024.1 230 PVPQRWRNSEILKML 244
                 89**********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1881.17
//
Query:       KKY15025.1  [L=553]
Description: putative and tpr domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-21   74.2   0.5    6.6e-21   74.2   0.5    2.8  3  DnaJ             DnaJ domain
    7.7e-16   56.9   9.6       0.02   15.0   0.2    7.9  8  TPR_2            Tetratricopeptide repeat
    2.5e-15   55.5   5.2     0.0011   18.7   0.0    7.1  8  TPR_1            Tetratricopeptide repeat
    3.1e-14   52.9   1.4    0.00023   21.2   0.0    4.8  5  TPR_9            Tetratricopeptide repeat
    3.1e-12   45.7   0.0       0.27   11.5   0.0    6.5  6  TPR_8            Tetratricopeptide repeat
    8.7e-12   45.4   0.2    7.5e-05   23.2   0.1    4.6  4  TPR_19           Tetratricopeptide repeat
    1.5e-09   37.8   5.2        1.5    9.9   0.0    6.9  6  TPR_14           Tetratricopeptide repeat
    2.5e-05   24.6  10.5         21    6.0   0.0    8.0  8  TPR_6            Tetratricopeptide repeat
    3.7e-05   23.9   3.3      0.059   13.6   0.2    4.6  4  ANAPC3           Anaphase-promoting complex, cyclosome, subun
    9.1e-05   22.6   0.5       0.31   11.5   0.0    4.6  3  TPR_17           Tetratricopeptide repeat
    0.00012   21.9   0.2        2.6    8.3   0.0    5.2  5  TPR_7            Tetratricopeptide repeat
    0.00052   19.6   0.6      0.063   13.0   0.0    4.3  5  TPR_11           TPR repeat
     0.0051   17.2   0.7      0.012   16.0   0.7    1.6  1  MRP-S28          Mitochondrial ribosomal subunit protein
  ------ inclusion threshold ------
      0.034   12.9   0.1       0.23   10.2   0.0    2.2  3  PknG_TPR         Protein kinase G tetratricopeptide repeat
      0.055   13.9   1.5         37    4.7   0.1    3.4  3  Alkyl_sulf_dimr  Alkyl sulfatase dimerisation
      0.064   13.2   0.3       0.13   12.2   0.3    1.4  1  CheZ             Chemotaxis phosphatase, CheZ
      0.081   13.1   3.2       0.17   12.1   0.3    2.3  2  SesA             N-terminal domain on NACHT_NTPase and P-loop
       0.38   11.5   8.9        7.4    7.3   0.2    5.4  5  TPR_16           Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       5.9   5.8e+03      53      56 ..     266     269 ..     237     287 .. 0.54
   2 ?   -0.5   0.1       1.4   1.4e+03      26      57 ..     379     404 ..     370     406 .. 0.64
   3 !   74.2   0.5   6.7e-24   6.6e-21       1      63 []     407     473 ..     407     473 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.9
                 HTSH CS
        DnaJ  53 Lsdp 56 
                  +++
  KKY15025.1 266 VNTA 269
                 3333 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.4
                 HHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHH CS
        DnaJ  26 lkyHPDknpkdpeaeekFkeineAyevLsdpe 57 
                 ++ HP ++      ++    +neA+  L+ ++
  KKY15025.1 379 KEAHPSES------DKINSLLNEAHTLLKRSK 404
                 44455443......444567888888887665 PP

  == domain 3  score: 74.2 bits;  conditional E-value: 6.7e-24
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTS..CCHH..HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDkn..pkdp..eaeekFkeineAyevLsdpekRkqYD 63 
                 dyY++Lgv+++a+e++Ik+aYr++ +++HPDk   ++ p  eae+k   ineAyevLsdpe R+++D
  KKY15025.1 407 DYYKVLGVDRSADEKTIKRAYRQMTKQFHPDKAqaQGIPkeEAEKKMAGINEAYEVLSDPELRARFD 473
                 8******************************99554444679***********************99 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0017       1.7       8      34 .]      43      69 ..      38      69 .. 0.91
   2 !   13.0   0.0   8.5e-05     0.085       5      33 ..      74     102 ..      71     103 .. 0.94
   3 ?    6.2   0.1     0.013        13       3      27 ..     106     130 ..     105     133 .. 0.92
   4 ?    4.4   0.0     0.049        49       7      33 ..     184     210 ..     181     211 .. 0.93
   5 !    6.7   0.0    0.0091         9      11      33 ..     223     245 ..     218     246 .. 0.90
   6 ?   -2.1   0.0       5.9   5.8e+03      11      22 ..     269     280 ..     267     282 .. 0.69
   7 !   15.0   0.2     2e-05      0.02       9      33 ..     326     350 ..     322     351 .. 0.93
   8 ?   -0.5   0.0       1.8   1.7e+03       4      32 ..     355     383 ..     353     384 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0017
       TPR_2  8 GlayyklgdyeeAleafekAleldPnn 34
                +++++++g  ++Al +f+ A++ dPnn
  KKY15025.1 43 AKSHLAKGAQNDALTYFDLAVSRDPNN 69
                7899999*******************8 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 8.5e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPn 33 
                 +++G  y+ lg+  +A ++f+++l+l P+
  KKY15025.1  74 FQRGATYLSLGRNSQAGADFDRVLQLKPD 102
                 89**************************8 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.013
       TPR_2   3 alynlGlayyklgdyeeAleafekA 27 
                 al +++++ +k+g++  A++++ kA
  KKY15025.1 106 ALVQRAKIRAKNGEWTGAKDDYVKA 130
                 68899*****************998 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.049
       TPR_2   7 lGlayyklgdyeeAleafekAleldPn 33 
                 ++++ +++gd  e + ++  +l+l+P+
  KKY15025.1 184 RARCRFERGDTREGVSDLAHVLQLNPG 210
                 899***********************6 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.0091
       TPR_2  11 yyklgdyeeAleafekAleldPn 33 
                  y l ++e+A++ ++k+l  dP+
  KKY15025.1 223 FYSLREPEKAIAQMRKCLHSDPD 245
                 78999*************99998 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 5.9
       TPR_2  11 yyklgdyeeAle 22 
                 ++ +++y +A+ 
  KKY15025.1 269 AFSKKQYSKAAS 280
                 567788888865 PP

  == domain 7  score: 15.0 bits;  conditional E-value: 2e-05
       TPR_2   9 layyklgdyeeAleafekAleldPn 33 
                 +ay+++++ ++Al ++ +Al l+P+
  KKY15025.1 326 QAYREMNNIKRALPYCTEALNLNPE 350
                 89**********************7 PP

  == domain 8  score: -0.5 bits;  conditional E-value: 1.8
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldP 32 
                 l +l++  + + ++e A++ ++kA e  P
  KKY15025.1 355 LLALAQRQIDSEEFEPAVNTLNKAKEAHP 383
                 66789999999999*9***9999988766 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0054       5.3      11      34 .]      46      69 ..      43      69 .. 0.87
   2 !   18.7   0.0   1.1e-06    0.0011       5      34 .]      74     103 ..      71     103 .. 0.95
   3 ?    3.9   0.0      0.05        50       3      27 ..     106     130 ..     106     130 .. 0.92
   4 ?   -0.4   0.0       1.2   1.2e+03       7      32 ..     184     209 ..     183     211 .. 0.84
   5 ?    1.6   0.0      0.28   2.8e+02      11      33 ..     223     245 ..     222     246 .. 0.87
   6 ?   -1.7   0.0       3.1   3.1e+03       9      20 ..     267     278 ..     267     280 .. 0.83
   7 !   18.3   0.1   1.5e-06    0.0015       9      33 ..     326     350 ..     325     351 .. 0.95
   8 ?   -2.8   0.0       6.6   6.6e+03      16      32 ..     367     383 ..     365     384 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0054
                HHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1 11 yfklgkydeAleyyekALelnPnn 34
                ++ +g  ++Al y++ A++ +Pnn
  KKY15025.1 46 HLAKGAQNDALTYFDLAVSRDPNN 69
                677788899**************8 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.1e-06
                 HHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALelnPnn 34 
                 +++G++y++lg+  +A ++++++L+l P++
  KKY15025.1  74 FQRGATYLSLGRNSQAGADFDRVLQLKPDF 103
                 689*************************97 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.05
                 HHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekA 27 
                 al +++ +  k+g++  A ++y kA
  KKY15025.1 106 ALVQRAKIRAKNGEWTGAKDDYVKA 130
                 67789999**************998 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 1.2
                 HHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnP 32 
                 ++ + f+ g+  e + +   +L+lnP
  KKY15025.1 184 RARCRFERGDTREGVSDLAHVLQLNP 209
                 677888899999999999999****9 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.28
                 HHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  11 yfklgkydeAleyyekALelnPn 33 
                 +++l ++++A++  +k+L  +P+
  KKY15025.1 223 FYSLREPEKAIAQMRKCLHSDPD 245
                 68999******999999988887 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 3.1
                 HHHHHTT-HHHH CS
       TPR_1   9 nayfklgkydeA 20 
                 n+ f++++y +A
  KKY15025.1 267 NTAFSKKQYSKA 278
                 567999***999 PP

  == domain 7  score: 18.3 bits;  conditional E-value: 1.5e-06
                 HHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   9 nayfklgkydeAleyyekALelnPn 33 
                 +ay+++++ + Al y+ +AL lnP+
  KKY15025.1 326 QAYREMNNIKRALPYCTEALNLNPE 350
                 69**********************7 PP

  == domain 8  score: -2.8 bits;  conditional E-value: 6.6
                 -HHHHHHHHHHHHHHST CS
       TPR_1  16 kydeAleyyekALelnP 32 
                 +++ A+   +kA e  P
  KKY15025.1 367 EFEPAVNTLNKAKEAHP 383
                 78999999999988776 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.3e-07   0.00023      10      65 ..      51     106 ..      44     116 .. 0.84
   2 !    8.2   0.0    0.0028       2.8      19      52 ..      94     127 ..      92     130 .. 0.95
   3 !   16.9   0.1   5.3e-06    0.0053       6      60 ..     155     209 ..     150     218 .. 0.91
   4 ?    0.4   0.0      0.72   7.2e+02      40      62 ..     224     246 ..     222     253 .. 0.88
   5 !    8.1   0.0    0.0028       2.8       4      62 ..     327     385 ..     325     394 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.3e-07
       TPR_9  10 dweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapda 65 
                     al + ++ +  +P+    ++ RG  +  lG+ s+A ad+++ l+l pd + a
  KKY15025.1  51 AQNDALTYFDLAVSRDPNNYLTIFQRGATYLSLGRNSQAGADFDRVLQLKPDFEGA 106
                 56789**********************************************64433 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0028
       TPR_9  19 erllllaPddpeerrdRGlllaqlGclsaAladL 52 
                 +r+l+l+Pd  + +  R+ ++a+ G + +A +d 
  KKY15025.1  94 DRVLQLKPDFEGALVQRAKIRAKNGEWTGAKDDY 127
                 8*****************************9995 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 5.3e-06
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                   ++dwe +   ++  ++ a+ +  +r  R+++++++G++++++ dL + l+l+p
  KKY15025.1 155 EKKQDWEGCVSNAQVAIMTASTTLWLRQLRARCRFERGDTREGVSDLAHVLQLNP 209
                 6789*************************************************99 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.72
       TPR_9  40 aqlGclsaAladLeaylalapda 62 
                 + l  +++A+a +  +l+ +pd 
  KKY15025.1 224 YSLREPEKAIAQMRKCLHSDPDS 246
                 678999***************86 PP

  == domain 5  score: 8.1 bits;  conditional E-value: 0.0028
       TPR_9   4 iaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapda 62 
                 ++ + ++  ral ++   l l+P++ + ++  ++ +  ++ ++ A++ L+ + +  p+ 
  KKY15025.1 327 AYREMNNIKRALPYCTEALNLNPESLHGLLALAQRQIDSEEFEPAVNTLNKAKEAHPSE 385
                 567778899****************************************9998887755 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.032        32       8      34 .]      43      69 ..      39      69 .. 0.88
   2 !   11.5   0.0   0.00027      0.27       5      33 ..      74     102 ..      72     103 .. 0.94
   3 ?    0.1   0.0       1.3   1.3e+03       7      32 ..     184     209 ..     181     210 .. 0.88
   4 !    7.2   0.0    0.0067       6.7       7      33 ..     218     245 ..     213     246 .. 0.83
   5 !   11.1   0.0   0.00037      0.37       9      33 ..     326     350 ..     320     351 .. 0.94
   6 ?    0.1   0.0       1.3   1.3e+03      11      30 ..     362     381 ..     353     384 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.032
                HHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  8 gsiylklgdyeeAkeyyekaleldpdn 34
                ++ +l +g  + A  y+  a++ dp+n
  KKY15025.1 43 AKSHLAKGAQNDALTYFDLAVSRDPNN 69
                66788999999**************97 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00027
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ++ g +yl+lg+  +A + + ++l+l+pd
  KKY15025.1  74 FQRGATYLSLGRNSQAGADFDRVLQLKPD 102
                 78899***********************8 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.3
                 HHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldp 32 
                  +++ ++ gd  e ++ + ++l+l+p
  KKY15025.1 184 RARCRFERGDTREGVSDLAHVLQLNP 209
                 67778899****************99 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0067
                 HHHHH.HHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiy.lklgdyeeAkeyyekaleldpd 33 
                 ++s y  +l + e+A++ ++k+l  dpd
  KKY15025.1 218 MSSEYfYSLREPEKAIAQMRKCLHSDPD 245
                 55556689999************99997 PP

  == domain 5  score: 11.1 bits;  conditional E-value: 0.00037
                 HHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   9 siylklgdyeeAkeyyekaleldpd 33 
                 ++y+++++++ A  y+ +al l+p+
  KKY15025.1 326 QAYREMNNIKRALPYCTEALNLNPE 350
                 79*********************97 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 1.3
                 HHHTT-HHHHHHHHHHHHHH CS
       TPR_8  11 ylklgdyeeAkeyyekalel 30 
                  ++ +++e A+ +++ka e+
  KKY15025.1 362 QIDSEEFEPAVNTLNKAKEA 381
                 577889999*******9875 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   0.00079      0.79       2      62 ..      47     109 ..      46     114 .. 0.87
   2 ?    6.3   0.0     0.014        14      10      45 ..      89     124 ..      87     125 .. 0.91
   3 ?    4.8   0.0      0.04        40       2      58 ..     189     246 ..     188     252 .. 0.89
   4 !   23.2   0.1   7.6e-08   7.5e-05       3      58 ..     330     385 ..     328     402 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00079
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd.d.arya 62 
                 la g   +Al ++  a + dp+n     +    +l+lg+  +A a  d++++ +pd + a ++
  KKY15025.1  47 LAKGAQNDALTYFDLAVSRDPNNYLTIFQRGATYLSLGRNSQAGADFDRVLQLKPDfEgALVQ 109
                 56777889******************************************9999995445555 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.014
      TPR_19  10 AlalleqalqedpknaearllLAeallalgqldeAe 45 
                 A a + ++lq +p+ + a+ + A++  ++g+++ A+
  KKY15025.1  89 AGADFDRVLQLKPDFEGALVQRAKIRAKNGEWTGAK 124
                 5667999**************************998 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.04
      TPR_19   2 laegdyaeAlalleqalqedpknaearllL.AeallalgqldeAealLdalpeedpdd 58 
                 +++gd  e ++ l+ +lq +p+  +  l++  e  ++l ++++A+a + + + +dpd+
  KKY15025.1 189 FERGDTREGVSDLAHVLQLNPGLVDPHLQMsSEYFYSLREPEKAIAQMRKCLHSDPDS 246
                 6899999999************7777777779999*************9999999995 PP

  == domain 4  score: 23.2 bits;  conditional E-value: 7.6e-08
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd 58 
                 ++++  +Al++ ++al  +p+++  +l+LA+ ++ + +++ A ++L+++ e+ p +
  KKY15025.1 330 EMNNIKRALPYCTEALNLNPESLHGLLALAQRQIDSEEFEPAVNTLNKAKEAHPSE 385
                 788999**********************************************9986 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.048        48       8      37 ..      43      72 ..      37      78 .. 0.83
   2 !    9.9   0.0    0.0015       1.5       6      43 ..      75     112 ..      71     113 .. 0.93
   3 ?    2.8   0.0      0.27   2.6e+02       2      38 ..     179     215 ..     178     220 .. 0.84
   4 ?    4.7   0.0     0.069        69       8      34 ..     220     246 ..     212     249 .. 0.85
   5 !    9.3   0.1    0.0022       2.2       8      43 ..     325     360 ..     320     361 .. 0.93
   6 ?    6.8   0.0     0.014        14       4      34 ..     355     385 ..     352     393 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.048
      TPR_14  8 aeallalGdpdeAiallrralalaPddaea 37
                a+ +la G   +A+++++ a++++P++  +
  KKY15025.1 43 AKSHLAKGAQNDALTYFDLAVSRDPNNYLT 72
                67789999999**************99655 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0015
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 ++++ +l lG+  +A a ++r+l+l Pd++ a+ + a+
  KKY15025.1  75 QRGATYLSLGRNSQAGADFDRVLQLKPDFEGALVQRAK 112
                 7899****************************999987 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.27
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeaw 38 
                 ++++++a+  +++Gd++e +  l  +l+l+P+  + +
  KKY15025.1 179 WLRQLRARCRFERGDTREGVSDLAHVLQLNPGLVDPH 215
                 6788899999*******************99866555 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.069
      TPR_14   8 aeallalGdpdeAiallrralalaPdd 34 
                  e+++ l++p++Aia  r++l  +Pd+
  KKY15025.1 220 SEYFYSLREPEKAIAQMRKCLHSDPDS 246
                 467899**************9999986 PP

  == domain 5  score: 9.3 bits;  conditional E-value: 0.0022
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawlllaq 43 
                  +a+++  + ++A+ ++ +al l+P+++  +l+laq
  KKY15025.1 325 CQAYREMNNIKRALPYCTEALNLNPESLHGLLALAQ 360
                 589******************************998 PP

  == domain 6  score: 6.8 bits;  conditional E-value: 0.014
      TPR_14   4 llalaeallalGdpdeAiallrralalaPdd 34 
                 llala+    +++++ A++ l++a +++P++
  KKY15025.1 355 LLALAQRQIDSEEFEPAVNTLNKAKEAHPSE 385
                 799*********************9999975 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.093        92       7      33 .]      43      69 ..      41      69 .. 0.90
   2 ?    3.3   0.0      0.15   1.5e+02       4      29 ..      74      99 ..      72     102 .. 0.89
   3 ?    2.3   0.1      0.32   3.2e+02       2      23 ..     106     127 ..     106     133 .. 0.88
   4 ?   -2.2   0.0       8.7   8.6e+03       3      23 ..     148     167 ..     147     171 .. 0.74
   5 ?    3.4   0.0      0.15   1.5e+02       6      31 ..     184     209 ..     182     210 .. 0.84
   6 ?    6.0   0.0     0.021        21      10      33 .]     223     246 ..     216     246 .. 0.87
   7 ?    2.7   0.0      0.24   2.4e+02       8      33 .]     326     351 ..     320     351 .. 0.86
   8 ?    0.4   0.0       1.3   1.3e+03       6      31 ..     356     383 ..     355     384 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.093
                HHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6  7 alsyrklgdtdkAlealerlikeYPdS 33
                a+s+++ g   +Al++++  +++ P++
  KKY15025.1 43 AKSHLAKGAQNDALTYFDLAVSRDPNN 69
                88999988999**************95 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.15
                HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  4 yklalsyrklgdtdkAlealerlike 29
                ++++  y++lg+ ++A + ++r+++ 
  KKY15025.1 74 FQRGATYLSLGRNSQAGADFDRVLQL 99
                889999***99************986 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.32
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAleal 23 
                 Al ++a+ + k g+++ A++ +
  KKY15025.1 106 ALVQRAKIRAKNGEWTGAKDDY 127
                 8999*******99*****9876 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 8.7
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAleal 23 
                  y++ ++ +k+ d++  +   
  KKY15025.1 148 AYLASEAEKKQ-DWEGCVSNA 167
                 57788899999.999887655 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYP 31 
                 +a+++++ gdt++ +  l  +++  P
  KKY15025.1 184 RARCRFERGDTREGVSDLAHVLQLNP 209
                 79*****99****9998887777766 PP

  == domain 6  score: 6.0 bits;  conditional E-value: 0.021
                 HHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6  10 yrklgdtdkAlealerlikeYPdS 33 
                 +++l +++kA++ +++++ + PdS
  KKY15025.1 223 FYSLREPEKAIAQMRKCLHSDPDS 246
                 455789*****************9 PP

  == domain 7  score: 2.7 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   8 lsyrklgdtdkAlealerlikeYPdS 33 
                 ++yr++++  +Al +  + ++  P+S
  KKY15025.1 326 QAYREMNNIKRALPYCTEALNLNPES 351
                 7999999******9999999999987 PP

  == domain 8  score: 0.4 bits;  conditional E-value: 1.3
                 HHHHHHHH..HHHHHHHHHHHHHHHH-T CS
       TPR_6   6 lalsyrkl..gdtdkAlealerlikeYP 31 
                 lal++r+    + + A+ +l++  + +P
  KKY15025.1 356 LALAQRQIdsEEFEPAVNTLNKAKEAHP 383
                 667777643447789******9999998 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0       0.1     1e+02       3      64 ..      50     112 ..      48     125 .. 0.77
   2 ?    3.1   0.0      0.11   1.1e+02      30      62 ..     220     253 ..     213     272 .. 0.86
   3 !   13.6   0.2     6e-05     0.059      21      81 ..     311     377 ..     299     378 .. 0.84
   4 ?   -0.9   0.0       1.9   1.9e+03      16      53 ..     382     420 ..     378     428 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.1
                 T-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHH CS
      ANAPC3   3 nnyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAq 64 
                 ++ ++A+ +++++++++++++  ++  + +++++g+  +A   +++  +l++  +g+++  A+
  KKY15025.1  50 GAQNDALTYFDLAVSRDPNNYLTIFQRGATYLSLGRNSQAGADFDRVlQLKPDFEGALVQRAK 112
                 67799*********8899999999999*****9999888877777776666666666665555 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
                 HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHH CS
      ANAPC3  30 AlclylngqykrAyellrka.klnskslgcrylf 62 
                 ++ +y++ + ++A+   rk+  +++ s+ c  lf
  KKY15025.1 220 SEYFYSLREPEKAIAQMRKClHSDPDSKPCSRLF 253
                 67899***************99999999999887 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 6e-05
                 --HHHHHHH.....HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  21 espedayll.....AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                  s++++y       ++++ ++++ krA+ ++ +a +ln++sl  ++ +Aq +++ +++e A+++L k
  KKY15025.1 311 ASSNSLYITlveqaCQAYREMNNIKRALPYCTEAlNLNPESLHGLLALAQRQIDSEEFEPAVNTLNK 377
                 456666664456779*******************************************999999987 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.9
                 H.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHH CS
      ANAPC3  16 laaetespedayllAlclylngqykrAyellrka.klns 53 
                 + +e++  ++++  A +l+++++ k  y++l      ++
  KKY15025.1 382 HPSESDKINSLLNEAHTLLKRSKSKDYYKVLGVDrSADE 420
                 556666667777778888888888877777776644455 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00032      0.31       5      32 ..      62      89 ..      58      90 .. 0.88
   2 ?    5.1   0.0     0.035        35       2      33 ..      93     124 ..      92     125 .. 0.90
   3 ?   -1.2   0.1       3.5   3.5e+03       2      20 ..     341     359 ..     340     360 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00032
      TPR_17  5 aleldPnnadaynnLAelllknGdlmtA 32
                a+ +dPnn    ++++ ++l++G+  +A
  KKY15025.1 62 AVSRDPNNYLTIFQRGATYLSLGRNSQA 89
                7899*******************87665 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.035
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 + ++l+l P+   a+ ++A++ +knG++  A+
  KKY15025.1  93 FDRVLQLKPDFEGALVQRAKIRAKNGEWTGAK 124
                 68999*********************987775 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 3.5
      TPR_17   2 ylkaleldPnnadaynnLA 20 
                 +++al l+P +   +  LA
  KKY15025.1 341 CTEALNLNPESLHGLLALA 359
                 7899*****9866666665 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.76   7.6e+02       6      34 ..      43      69 ..      39      70 .. 0.81
   2 ?    3.6   0.0     0.082        82       3      34 ..      74     105 ..      72     107 .. 0.86
   3 ?   -1.2   0.0       2.7   2.7e+03       1      24 [.     106     129 ..     106     137 .. 0.80
   4 ?    1.5   0.0      0.38   3.7e+02      11      34 ..     225     246 ..     221     248 .. 0.86
   5 !    8.3   0.0    0.0026       2.6       7      28 ..     326     347 ..     326     361 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.76
       TPR_7  6 arlysrlGdyeeAielyeqsLaltkdped 34
                a  + + G   +A++++    a+ +dp++
  KKY15025.1 43 AKSHLAKGAQNDALTYFDL--AVSRDPNN 69
                566777778889*******..99999985 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.082
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLaltkdped 34 
                 ++ + +y +lG+ ++A   + ++L+l  d e+
  KKY15025.1  74 FQRGATYLSLGRNSQAGADFDRVLQLKPDFEG 105
                 56789*****************9999988776 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.7
       TPR_7   1 aLlnLarlysrlGdyeeAielyeq 24 
                 aL++ a ++ + G++  A + y +
  KKY15025.1 106 ALVQRAKIRAKNGEWTGAKDDYVK 129
                 6888899999*****998776655 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.38
       TPR_7  11 rlGdyeeAielyeqsLaltkdped 34 
                 +l++ e+Ai   ++   l++dp+ 
  KKY15025.1 225 SLREPEKAIAQMRK--CLHSDPDS 246
                 68999*********..99999875 PP

  == domain 5  score: 8.3 bits;  conditional E-value: 0.0026
       TPR_7   7 rlysrlGdyeeAielyeqsLal 28 
                 ++y+++++ ++A+ +++++L l
  KKY15025.1 326 QAYREMNNIKRALPYCTEALNL 347
                 68****************5544 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.017        17       5      42 .]      47      84 ..      43      84 .. 0.92
   2 !   13.0   0.0   6.3e-05     0.063       2      42 .]      78     118 ..      77     118 .. 0.94
   3 ?   -3.6   0.0       9.7   9.6e+03      19      31 ..     203     215 ..     189     217 .. 0.66
   4 ?   -0.1   0.1      0.75   7.5e+02       3      27 ..     327     351 ..     326     360 .. 0.68
   5 ?   -1.8   0.0       2.5   2.5e+03       8      20 ..     366     378 ..     363     383 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.017
      TPR_11  5 yeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42
                 ++G  ++A++ +  A+  dP+n    + +G++y+ +G
  KKY15025.1 47 LAKGAQNDALTYFDLAVSRDPNNYLTIFQRGATYLSLG 84
                68999*****************************9988 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 6.3e-05
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                   y ++G++ +A +++ + l+l+Pd+  a+  ++++ +k+G
  KKY15025.1  78 ATYLSLGRNSQAGADFDRVLQLKPDFEGALVQRAKIRAKNG 118
                 5799*******************************999998 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 9.7
      TPR_11  19 kAlkldPdnaeay 31 
                   l+l+P  ++ +
  KKY15025.1 203 HVLQLNPGLVDPH 215
                 5689999888777 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.75
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdn 27 
                 ay+e ++++ A+    +Al+l+P++
  KKY15025.1 327 AYREMNNIKRALPYCTEALNLNPES 351
                 6666666666666666899999986 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 2.5
      TPR_11   8 GkyeeAieaYkkA 20 
                  ++e A++ ++kA
  KKY15025.1 366 EEFEPAVNTLNKA 378
                 68999*******9 PP

>> MRP-S28  Mitochondrial ribosomal subunit protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.7   1.2e-05     0.012      23     110 ..     330     421 ..     312     437 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.2e-05
     MRP-S28  23 hpasrkvvlevkvadLkleekqkhklklLagpr.....ynpetdviklsserfesaaqNkrylsdilekLlkeakdlkddfeDvpldtrhlka 110
                 + ++ k +l  ++++L+l+++++h l+ La+ +     ++p  +++  + e ++s+++  ++l +  ++Llk +k  kd ++ + +d +  + 
  KKY15025.1 330 EMNNIKRALPYCTEALNLNPESLHGLLALAQRQidseeFEPAVNTLNKAKEAHPSESDKINSLLNEAHTLLKRSKS-KDYYKVLGVDRSADEK 421
                 456778889999******************87622222666688*******************************9.9988888888665444 PP

>> PknG_TPR  Protein kinase G tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00023      0.23      83     158 ..      25     100 ..      16     106 .. 0.90
   2 ?   -3.1   0.0       2.5   2.5e+03     202     221 ..     185     204 ..     164     218 .. 0.62
   3 ?   -0.9   0.1      0.52   5.1e+02      73     125 ..     332     383 ..     265     388 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00023
                 -------GCC-SHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHS CS
    PknG_TPR  83 leadgvdaseslevpLaevrahldlGdveearelLdeleeeveedWrldWyrglaeLlegdyeeAaaeFdevlaal 158
                 ++a++++    +   +a ++ hl  G +++a +++d   ++ ++++ + + rg + L+ g+ ++A a+Fd+vl++ 
  KKY15025.1  25 VDASEIPSDIPVSQLIASAKSHLAKGAQNDALTYFDLAVSRDPNNYLTIFQRGATYLSLGRNSQAGADFDRVLQLK 100
                 566667777777788999******************************************************9875 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.5
                 HHHHHHTT-HHHHHHHHHTS CS
    PknG_TPR 202 aRqlaaagdraaAvaaLdeV 221
                 aR + ++gd+++ v+ L +V
  KKY15025.1 185 ARCRFERGDTREGVSDLAHV 204
                 44444444444444444443 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.52
                 HHHHHHHT---------GCC-SHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH- CS
    PknG_TPR  73 dsleaaresaleadgvdaseslevpLaevrahldlGdveearelLdeleeeve 125
                 + +++a    +ea ++   esl   La+++ ++d  + e a+++L++ +e+++
  KKY15025.1 332 NNIKRALPYCTEALNL-NPESLHGLLALAQRQIDSEEFEPAVNTLNKAKEAHP 383
                 3333333333333333.567899999999999999999999999999887765 PP

>> Alkyl_sulf_dimr  Alkyl sulfatase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.076        76      70     122 ..      37      89 ..      34      95 .. 0.90
   2 ?    2.5   0.1      0.19   1.9e+02      69      92 ..     259     282 ..     238     348 .. 0.80
   3 ?    4.7   0.1     0.038        37      72     113 ..     355     399 ..     350     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.076
                      HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHHHH-SS CS
  Alkyl_sulf_dimr  70 ekvlekakealkegdyrwaaellnhlvfadpenaeakelkadaleqlgyqaes 122
                      +++++ ak++l++g  + a++  + +v  dp+n  +   + +++ +lg+ +++
       KKY15025.1  37 SQLIASAKSHLAKGAQNDALTYFDLAVSRDPNNYLTIFQRGATYLSLGRNSQA 89 
                      578999***************************99999999999999988776 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.19
                      HHHHHHHHHHHHHTT-HHHHHHHH CS
  Alkyl_sulf_dimr  69 aekvlekakealkegdyrwaaell 92 
                       +kvl+k+++a+++++y  aa+ll
       KKY15025.1 259 IQKVLDKVNTAFSKKQYSKAASLL 282
                      5799**************999986 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.038
                      HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHH...HHHHH CS
  Alkyl_sulf_dimr  72 vlekakealkegdyrwaaellnhlvfadpenaeakel...kadal 113
                      +l+ a++++++++++ a++ ln++ +a+p++++  +    +a++l
       KKY15025.1 355 LLALAQRQIDSEEFEPAVNTLNKAKEAHPSESDKINSllnEAHTL 399
                      7899***********************999754433312222232 PP

>> CheZ  Chemotaxis phosphatase, CheZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   0.00013      0.13      22     121 ..     296     395 ..     289     399 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
                 XXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        CheZ  22 gldekllekaaeeipdardrLeyvielTeqA..Aertldavekalpla.dklkeeakeleeewerllerelekeefrelvkeveaflkeveektealkk 117
                 + d  + +kaa +i++a++   y+ +l eqA  A r ++ + +alp   ++l+ + ++l+    +l++r++++eef+  v++++++ +  +++++++++
  KKY15025.1 296 KED-VAESKAAGTIHNASSNSLYI-TLVEQAcqAYREMNNIKRALPYCtEALNLNPESLHGL-LALAQRQIDSEEFEPAVNTLNKAKEAHPSESDKINS 391
                 555.667789999****9999997.567777456799*********8626688888888876.6899******************************** PP

                 XXXX CS
        CheZ 118 qLle 121
                  L+e
  KKY15025.1 392 LLNE 395
                 9998 PP

>> SesA  N-terminal domain on NACHT_NTPase and P-loop NTPases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.47   4.7e+02      38      89 ..     259     305 ..     253     312 .. 0.69
   2 ?   12.1   0.3   0.00017      0.17       4     111 ..     317     426 ..     315     435 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.47
        SesA  38 vqetLedaksqlesskldedtesaikpvlesckekatkleeifekvapapad 89 
                 +q++L+++++++++++ ++     + ++l + ke+   ++++ e va+++a+
  KKY15025.1 259 IQKVLDKVNTAFSKKQYSK-----AASLLVGDKEQSGLIQDVKEDVAESKAA 305
                 6777777777777777776.....4567777777777777777777766665 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00017
        SesA   4 tiaiveaaiklydaikdikg.lpeaFrevgkrLplvqetLedaksqlesskldedtesaikpvlesckekatkleeifekvapapadsrleryrka..v 99 
                  i++ve+a+++y+++++ik+ lp   ++ + + + ++  L  a++q++s++++++ ++ ++++ e+  ++ +k+++++++     ++s+ + y+k+  v
  KKY15025.1 317 YITLVEQACQAYREMNNIKRaLPYCTEALNLNPESLHGLLALAQRQIDSEEFEPAVNT-LNKAKEAHPSESDKINSLLNEAHTLLKRSKSKDYYKVlgV 414
                 599**************8873666667777788899******************9888.**********************888888888999888555 PP

        SesA 100 rslgkgskVEtL 111
                  +  +++++   
  KKY15025.1 415 DRSADEKTIKRA 426
                 555666666555 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       1.1   1.1e+03      40      67 ..      42      69 ..      37      70 .. 0.85
   2 ?    7.3   0.2    0.0074       7.4       3      57 ..      76     128 ..      74     137 .. 0.87
   3 ?   -0.7   0.0       2.4   2.4e+03      40      54 ..     184     198 ..     181     209 .. 0.64
   4 ?   -0.7   0.0       2.4   2.4e+03      44      66 ..     223     245 ..     219     247 .. 0.53
   5 ?    3.4   0.0      0.12   1.2e+02       6      66 ..     327     384 ..     324     402 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1.1
      TPR_16 40 lgdaalrqgrlaeAaalyraalraapda 67
                ++ ++l++g   +A+ +++ a+  +p++
  KKY15025.1 42 SAKSHLAKGAQNDALTYFDLAVSRDPNN 69
                5778999999999999999999999975 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0074
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.aly 57 
                 ++  +l +g+  +A a ++++l +    Pd   Al  ++ +++++g++++A  +++
  KKY15025.1  76 RGATYLSLGRNSQAGADFDRVLQLK---PDFEGALVQRAKIRAKNGEWTGAKdDYV 128
                 677899*******************...88888****************9965555 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.4
      TPR_16  40 lgdaalrqgrlaeAa 54 
                 ++++++++g+  e +
  KKY15025.1 184 RARCRFERGDTREGV 198
                 566666666655544 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 2.4
      TPR_16  44 alrqgrlaeAaalyraalraapd 66 
                 ++ + + ++A+a+ r+ l  +pd
  KKY15025.1 223 FYSLREPEKAIAQMRKCLHSDPD 245
                 34455555555555555555554 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.12
      TPR_16   6 aalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                 a+++ ++  +A+++ ++al ++   P+  + ll+l++      ++++A+  +++a +a p+
  KKY15025.1 327 AYREMNNIKRALPYCTEALNLN---PESLHGLLALAQRQIDSEEFEPAVNTLNKAKEAHPS 384
                 7889999999999999999999...886667777776666667777777666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 3529.68
//
Query:       KKY15026.1  [L=1906]
Description: putative hexaprenyl pyrophosphate synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.4e-70  234.6   0.0    2.8e-69  233.0   0.0    1.8  1  polyprenyl_synt  Polyprenyl synthetase
    8.5e-44  150.0   0.1    2.5e-43  148.4   0.1    1.9  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
      5e-38  129.1   5.4    2.5e-19   69.1   0.3    3.3  3  Bromodomain      Bromodomain
    3.5e-28   98.9   0.0    6.1e-28   98.1   0.0    1.3  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    4.4e-17   62.1   1.0    8.2e-17   61.2   1.0    1.5  1  BAH              BAH domain
  ------ inclusion threshold ------
      0.012   16.2   2.4       0.96   10.1   0.9    3.2  3  HTH_32           Homeodomain-like domain


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.0   0.0   9.3e-73   2.8e-69       2     255 ..    1552    1857 ..    1551    1858 .. 0.92

  Alignments for each domain:
  == domain 1  score: 233.0 bits;  conditional E-value: 9.3e-73
                       HHHHHHHHHHHHSSS--HHHHHHHHHHHHHSCG......H.................................................HHH CS
  polyprenyl_synt    2 elleealeylveagGKrlRpllvllaaealkee......e.................................................eel 38  
                       +ll+++ +y+++++GK++Rp+lvll+++a++e       +                                                 + l
       KKY15026.1 1552 RLLDTVGKYYTQSEGKHVRPMLVLLMSQAVSEApkkiraHssafndsninspitssnflidfnpnqptsnpltnptndndytlslnpdsSIL 1643
                       6789999************************444556550556666777778888888888999999999999999999999***9999899 PP

                       HHHHHHHHHHHHHHHHHHHHHHHHTT-SEETTEE-HHHCTCHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHH... CS
  polyprenyl_synt   39 ekaavlawivellhaasLvhDDimDdsetRRGqpcahrlvGnklAindgdfllarafellaklfekslellelfsevllqtveGqlldl... 127 
                        ++++la+i+el+h asL+hDD++D ++tRR +p+a+ l+Gnk+A+++gdfll+ra+  la+l  +++e++el+++v++++veG++++l   
       KKY15026.1 1644 PSQRRLAEITELIHLASLLHDDVIDVATTRRSKPSANVLFGNKMAVLAGDFLLGRASVALARL--RDPEVTELLATVIANLVEGEFMQLknt 1733
                       9**************************************************************..99**********************554 PP

                       .HHTTTTTCCC.SHHHHHHHHHHHTHHHCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHSS-TSHHHHTT---H CS
  polyprenyl_synt  128 .eeekdddlskfsleeyleivkyKTaylfalpvalaallagasdeelealkdiglelGlaFQiqDDylDlfgdpevlgKpagtDiqegkctl 218 
                        e+ek++  s+ +++ yl++++ K a+l++ ++++ all++ ++e+++a++ +g++lGlaFQ++DD+lD++  +++lgKpag+D++ g +t+
       KKY15026.1 1734 aEDEKHPVWSEDTISYYLQKTYLKSASLISKSCRATALLGNSAPEVVDAAYAYGKNLGLAFQLVDDMLDYTIAESELGKPAGADLELGLATA 1825
                       434456667799999**************************999************************************************ PP

                       HHHHHHHCT-HHHHHHHHHHTTSSHHHHHHHHHHHHH CS
  polyprenyl_synt  219 pilkalelaspeqrkvlkeilgkkaekeedvkealel 255 
                       p+l+a++ +spe    l e++g+++++e+dvk+a ++
       KKY15026.1 1826 PLLFAWK-QSPE----LGELVGRRFSTEGDVKKARDI 1857
                       *******.7777....*****************9876 PP

>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.4   0.1   8.5e-47   2.5e-43       2     204 .]    1223    1455 ..    1222    1455 .. 0.91

  Alignments for each domain:
  == domain 1  score: 148.4 bits;  conditional E-value: 8.5e-47
                       EEEEEGSS--S-S-STEEEEEESGGGS.....................SS-SS-BSSS----S---HHHHHHHHHHH.............-H CS
                       xxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxx RF
  Glyco_hydro_3_C    2 VLLkNennlLPLkkklkkiaviGpnad.....................etlklGggsgtvtvsylvsplegirerles...........eeg 61  
                       +LLkN nn+LP++k  k i v+G++a                      +tl+ Gggsgt + sylv pl++i++ ++            +  
       KKY15026.1 1223 TLLKNTNNALPISKPPKVIGVFGNDAAdeadglyqpedypandygydiGTLYVGGGSGTGRLSYLVPPLDAIKAWARPsgslvqyitsnSVA 1314
                       7***********99999******99999************************************************769*******997667 PP

                       HHHHHHHHHHTSEEEEEEEES...SB-TTSCSGHHSSTTHHHHHHHHHHTTSSEEEEEEESSGG--TTTGTTTEEEEEE-S--GCCHHHHHH CS
                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C   62 ideaveaakeaDvavvvvgedpeiegEgvDrtdlalpeaqdelikavaaanknvvvvlqsggpvavepwkeenvkAilaawlpGqegGtaia 153 
                        + + ++    Dv+ v++++     +Eg+Dr +++++ +  +++++v + ++n++vv++sgg+ ++ +++++nv+Ai+aa+lpGqe+G++++
       KKY15026.1 1315 AESVSTIYPIPDVCFVFLKTY---VTEGQDRLSFDVDWNGTTVVNTVTKLCNNTIVVTHSGGVNTMPWADNPNVTAIIAAHLPGQETGNSLV 1403
                       7778888999***********...******************************************777999******************** PP

                       HHHTTSS---B--SS-EESSSGGG..............S-----S.....ETTTT-BCH CS
                       xxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx.....xxxxxxxxx RF
  Glyco_hydro_3_C  154 dvLfGdvnPsGkLpvtfpksledlpd...dyyeekdtykfegtpl.....YpeGlglsY 204 
                       dv+ G+vnPsGkLp+t++ +++d++    +++ ++   +           ++eGl ++Y
       KKY15026.1 1404 DVISGKVNPSGKLPFTIAYNASDYNApivNFTGTD---E--P--DawqsdFTEGLLIDY 1455
                       ************************66223333332...1..1..123445999999998 PP

>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.2   4.6e-20   1.4e-16      10      82 ..      70     142 ..      64     144 .. 0.96
   2 !   69.1   0.3   8.5e-23   2.5e-19      16      83 ..     279     346 ..     264     347 .. 0.95
   3 ?   -0.5   0.0      0.44   1.3e+03      57      78 ..     413     434 ..     408     437 .. 0.78

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 4.6e-20
                  TTTCGGGGCSTT-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHH CS
  Bromodomain  10 ehklaepFlepvdpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviyela 82 
                  eh +a+ F++ v+++  pdyy+vik P+ LstI++k+ +++Y+ +++   d+ ++++Na+ yn+++s  y +a
   KKY15026.1  70 EHYPAHLFRRIVNKRLMPDYYEVIKDPIALSTIRSKILRKQYTEFKEYVRDFAQIVHNAKLYNRPNSGAYNDA 142
                  78899**************************************************************999987 PP

  == domain 2  score: 69.1 bits;  conditional E-value: 8.5e-23
                  GGCSTT-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHHH CS
  Bromodomain  16 pFlepvdpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviyelae 83 
                  +F++ +d+  +p+yya++++P+ +  Ik+k++++kY+sl++f++dl l+f+Na++yn+++s++y++a+
   KKY15026.1 279 HFQRLPDKVLNPEYYAAVQNPIAIDLIKRKAKRKKYRSLDEFMKDLDLMFENAKMYNEDDSDVYKAAA 346
                  799**************************************************************997 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.44
                  HHHHHHHHHHHHHHHSHTTSHH CS
  Bromodomain  57 feadlkllfsNarkyngegsvi 78 
                  +++  k+++ Na  y++++  +
   KKY15026.1 413 WQDSEKQMWINACWYYRPEQTV 434
                  5555689*********987765 PP

>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.0     2e-31   6.1e-28      83     251 ..     997    1171 ..     988    1178 .. 0.87

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 2e-31
                     SSS.---S-HHHHHHHT-HHHHHHHHHHHHHHHHHHT--EE---B--.---STTSSSGGGSS-SSHHHHHHHHHHHHHHHHHTT-EEEEEEETT CS
  Glyco_hydro_3   83 geg.tlfPsalalaatssldlikelgriiakelralgididfaPvvd.vnrdprngigvrsFsedpelvaalaaamvkGlqgagvaatvKHFpg 174 
                      +   +fP+ l+ aa++++dli++ g  +a+e    g +i ++Pvv  ++r    g++ ++Fs dp+l++  ++a++ ++q++g+ a+vKH++g
     KKY15026.1  997 ADYvSVFPAGLSAAASWDRDLIYQRGLLMAQEFKGKGSHIALGPVVGpLGRSGYGGRNWEGFSPDPYLTGEAVNATIIAMQSTGLQACVKHYIG 1090
                     555579****************************************7477777777************************************** PP

                     GTT-.....SSETTT..SEEB----HHHHHHTTHHHHHHHHHTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS---SEE CS
  Glyco_hydro_3  175 hGdg.....avdshk..elptvdhseeelrevdlvpfqaaieagvdsVMtaHvqfpaldgtpatgskklltdvLRkelGFdGvv 251 
                       +      ++++++  e + ++++ + ++e +  pf +ai+agv sVM +   ++ ++g+ a  ++k l ++L++el F+G v
     KKY15026.1 1091 NEQEtqrnpSTENGVtiEAVSSNIDDRTMHELYTWPFANAIRAGVASVMCS---YNRINGSYACQNSKTLNGILKEELAFQGYV 1171
                     8543111114556652244556789999***********************...****************************87 PP

>> BAH  BAH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   1.0   2.7e-20   8.2e-17       2     122 .]     386     504 ..     385     504 .. 0.96

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 2.7e-20
                 EEETTGEEEEEETTSTTEEEEEEEEEEEEETTSTCEEEEEEEEEEECGGGS.TTTTHCCCTTEEEEEEEEEEEEGGGEEEEEEEEEHHHHCTECCHCHH CS
         BAH   2 tyavGdfVyfddtstdepyqirrIeeLkenakneeaeatvlvdwflrpeet.ksalklrqkrElfltrqseilplaairgkcrVvllsdleeaqnylpk 99 
                  y+vGd+V +++ ++  ++ +++I + ++++ ++    + +++w++rpe+t ++ +k + ++E+  t q+ ++ ++++ g+c V+ ++++   +++   
  KKY15026.1 386 VYKVGDWVHIQNPNDVTKPIVAQIYRTWQDSEKQ---MWINACWYYRPEQTvHQFEKHFFPNEVVKTGQYRDHHIDEVVGRCFVMFFTRFSRGRPRGLD 481
                 69************9******************9...**************9999999999***********************************977 PP

                 CSTTEEEEEEEEETTTTEEEE-S CS
         BAH 100 klddtFycslvydptaktfkkdk 122
                  + ++++c+  y++++ +++k+k
  KKY15026.1 482 PETEVYVCEARYNEEKHKLNKIK 504
                 78999**************9987 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.9   0.00032      0.96      18      41 ..     239     262 ..     226     279 .. 0.86
   2 ?    3.3   0.0     0.042   1.3e+02      22      54 ..     473     505 ..     469     517 .. 0.78
   3 ?   -2.7   0.0       3.2   9.7e+03      43      60 ..    1738    1755 ..    1720    1765 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00032
      HTH_32  18 kdrprrgrprklsdevrariiall 41 
                 + r+rrgrp++++   +ari+a+l
  KKY15026.1 239 ESRKRRGRPPRVDTPMEARIKAVL 262
                 57999*****************99 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.042
      HTH_32  22 rrgrprklsdevrariiallreeprWsprqlaa 54 
                 +rgrpr l++e++ ++++ + +e +  + ++  
  KKY15026.1 473 SRGRPRGLDPETEVYVCEARYNEEKHKLNKIKT 505
                 689***************996665555555554 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.2
      HTH_32   43 eeprWsprqlaarlaere 60  
                  ++p Ws + ++ +l++ +
  KKY15026.1 1738 KHPVWSEDTISYYLQKTY 1755
                  467999999999996655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1906 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1050  (0.0585643); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.35u 0.35s 00:00:01.70 Elapsed: 00:00:00.54
# Mc/sec: 10574.48
//
Query:       KKY15027.1  [L=368]
Description: putative zinc finger protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-10   40.6   0.0      5e-10   40.0   0.0    1.3  1  OTU       OTU-like cysteine protease
  ------ inclusion threshold ------
      0.021   15.3   0.1      0.077   13.5   0.1    1.9  2  UN_NPL4   Nuclear pore localisation protein NPL4
      0.082   13.0   0.0       0.16   12.1   0.0    1.4  1  DUF2318   Predicted membrane protein (DUF2318)
       0.11   12.4   0.4       0.21   11.6   0.4    1.4  1  RHH_3     Ribbon-helix-helix domain


Domain annotation for each model (and alignments):
>> OTU  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   1.1e-13     5e-10       3     108 ..     179     286 ..     177     292 .. 0.83

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 1.1e-13
                 SS-HHHHHHHHCCCSS.SHCCHHHHHHHHHCHHHHHHTSSHHCCHHHHCCHHH..HHHHTTSTTHHHHHHHHHHHHHHCTS-EEE.....ETTSSSSEE CS
         OTU   3 DGnCLlravsqqlwgvsdelrkakvseLreklaeylrehseelelfleeeeeg..ylkeiektaawggeleifalahiLrrpIiV.....lksesgeel 94 
                 D  CL+ra++q++         ++ +eLr+ +a++++ h ++++ ++ +++e   y++ i+ + awgg++e+ +l+  ++  I       l+ ++ +e 
  KKY15027.1 179 DNSCLFRAIAQAVT-----PHMDTMNELRSIVAQNIQAHPDKYSKVVLDDKEPddYCRWIQTEDAWGGQIELDILSTHFDIEICSidvqtLRVDRYNEG 272
                 557**********8.....44456779********************99966699************************98875445577777777777 PP

                 EE-TT-EEE--TTS CS
         OTU  95 vglkfegvylplek 108
                 + ++   vy+  ++
  KKY15027.1 273 MMTRCVVVYSGIHY 286
                 77777777776665 PP

>> UN_NPL4  Nuclear pore localisation protein NPL4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.7e-05     0.077       7      42 ..       3      38 ..       1      44 [. 0.92
   2 ?   -1.8   0.0         1   4.6e+03      21      40 ..     193     212 ..     188     220 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.7e-05
                EEEEETTEEEEEEE-TTSBHHHHHHHHHHHSS-STT CS
     UN_NPL4  7 iRvqSadGikRieisekstlktllekvaeelkfsen 42
                iR + ++G + ++++++st+++ll+ +  + ++++ 
  KKY15027.1  3 IRLRGPSGQSTLTLEDTSTVSQLLDEISSQTSIPKS 38
                899****************************99976 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1
                 -TTSBHHHHHHHHHHHSS-S CS
     UN_NPL4  21 sekstlktllekvaeelkfs 40 
                 ++  t+++l + va++++ +
  KKY15027.1 193 PHMDTMNELRSIVAQNIQAH 212
                 56679999******999865 PP

>> DUF2318  Predicted membrane protein (DUF2318)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      25      62 ..     308     347 ..     295     354 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
     DUF2318  25 ksdgklrvaldaCevCekkgYv..qegeelvCknCgvrfa 62 
                 + dg l+ al  C+  +++ Y+    g ++ C+ Cg++++
  KKY15027.1 308 ADDGILASALALCQTLQDRHYYtdTAGFQIRCNDCGSMVT 347
                 4577889*************99666789********9865 PP

>> RHH_3  Ribbon-helix-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   4.6e-05      0.21      15      32 ..      24      41 ..      20      43 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.6e-05
       RHH_3 15 ekLkaLSekTrIprSkll 32
                + L+++S +T+Ip+S l+
  KKY15027.1 24 QLLDEISSQTSIPKSSLI 41
                78*************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.51
# Mc/sec: 2180.89
//
Query:       KKY15028.1  [L=464]
Description: putative oxysterol-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.3e-53  179.7   0.1    1.4e-51  175.5   0.1    2.0  1  Oxysterol_BP  Oxysterol-binding protein


Domain annotation for each model (and alignments):
>> Oxysterol_BP  Oxysterol-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.5   0.1   7.7e-56   1.4e-51       4     358 ..      47     432 ..      44     446 .. 0.81

  Alignments for each domain:
  == domain 1  score: 175.5 bits;  conditional E-value: 7.7e-56
                   CCHTTSTT.-BCCCS..---GGGEEEEEHHHHHH.HCCTTCHHHHHHHC.SSHHHHHHHHHHHHHHCCCGCTSTSSSEEE---TT-EEEEEETTCEE CS
  Oxysterol_BP   4 silkkciG.kDLski..slPvffneplSlLqrla.edleyselLdkaakeddsleRlayVaaFalSsyastikrrlkKPFNPlLGEtfelvredkgf 96 
                    il+k +G  D+ ++  slP +++ep+  L  ++   +  +e++ ++ ++dd++eR++ V++F++++  +++k++ +KP+N  LGE f++ ++ k+ 
    KKY15028.1  47 GILRKFVGvSDIANVrfSLPAQLLEPIPNLGLFSlLRCDRPETFVSIGESDDEIERMLEVLRFWFTKDLKYVKGKPCKPYNSALGEFFRCNWDIKDD 143
                   678888884478766559************976637899*****************************************************55333 PP

                   ..........................EEEEEEEETTTTEEEEEEEE..CTEEEEEEEEEEEEE-SSEEEEEE-SE....EEEEEEEESEEEEEEE-- CS
  Oxysterol_BP  97 ..........................rfiaEQVsHhPpvsAfhaes..egweldgeikvkskflgkslevkpeGt....ahlellkksgehYtwtkp 161
                                              +++EQ+sHhPpvsAf++++  +g++ +g  +++ kf+g+s++v+p G+    ++++l+k+ +e+Y++t+p
    KKY15028.1 144 ehpiseittqkssetlkkadgetvrvSYLTEQTSHHPPVSAFYVDCpkKGVTARGFDQISAKFTGTSVRVTP-GQhnlgIFINLEKRGDEEYQLTHP 239
                   345555566667777888888888889*******************9999********************99.540111455667889********* PP

                   EEEEE-TTTTS-EEEEEEEEEEEETTT--EEEEEEE---SSS---SSEEEEEEEE..............TTS-EEEEEEEETTTEEEEEETTSTTS- CS
  Oxysterol_BP 162 ttivhniivgklwvelsgeveitnhstgdkakleFkkkglfsskksnkvegkvkd..............kkkevlyeisGkwdeelyikkkktekke 244
                    + + +i+ g l v +s+++ it  +t+ k++l + ++g+++ k++n+v+g +++               +k+ ++++ G w++++y+++++t++++
    KKY15028.1 240 AANLGGILRGALAVSVSDHCFITCPKTKLKTILYYLEEGWLG-KSQNRVQGAIFRydpsndkysklkdvPEKDIVCKLDGCWQDKVYYTRVNTNSSS 335
                   ***********************999***************6.99*********7778889999999998999***************999986655 PP

                   -EEEEETT-BSXXGCGSSTTBCCCCCCH---.--.....GGG--HHHHCCT---.TTGGS-TTBGGG-HHHHHHHTT-HHHHHHHHHHHHHHHHHHH CS
  Oxysterol_BP 245 eeedasekskvkekeeqeefeseklWkaspl.pkaee..yygftkfavtlNeieekekslaptDsRlRpDqraleegdideAeeeKkrlEekQRerr 338
                   + +  s+  +  + e  +  +   lW   +  p  ++  + +  +f            +   tD        a+++++++ A++ K+ lEe+QRe++
    KKY15028.1 336 TPAG-SRVPSPLPPERIQLIDLSPLWPVPKDiPPPSQqlPNESRQF------------WSGVTD--------AIKSKQYSLATRLKQDLEERQREKA 411
                   5443.33345555555556666668888433332211012222222............223333........9************************ PP

                   HHHCCTT.----SSEEEEETT CS
  Oxysterol_BP 339 kereekk.ewkpkwFekekdp 358
                   ++r+e++ ewkp++F+++ +p
    KKY15028.1 412 AKRKEEGvEWKPRFFTENLSP 432
                   ***776669******998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.33s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 2953.32
//
Query:       KKY15029.1  [L=1218]
Description: putative condensin complex subunit 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-58  196.2   0.1    1.2e-57  194.4   0.1    2.1  1  Cnd1_N     non-SMC mitotic condensation complex subunit 1, N-
    7.4e-48  162.6   4.6    5.8e-43  146.7   0.3    3.2  4  Cnd1       non-SMC mitotic condensation complex subunit 1
    2.5e-14   53.4   0.5    8.9e-05   22.8   0.0    5.0  7  HEAT_2     HEAT repeats
    1.9e-09   37.0   8.4       0.03   14.5   0.1    7.0  8  HEAT       HEAT repeat
    6.2e-06   25.0   2.6      0.016   13.8   0.2    3.0  3  Adaptin_N  Adaptin N terminal region
    2.9e-05   24.5   4.2     0.0086   16.6   0.2    4.4  5  HEAT_EZ    HEAT-like repeat
    5.1e-05   22.6   2.2     0.0014   17.9   0.9    3.6  3  Cnd3       Nuclear condensing complex subunits, C-term domain
    5.9e-05   23.2   0.1       0.13   12.5   0.0    3.5  2  RTP1_C1    Required for nuclear transport of RNA pol II C-ter
  ------ inclusion threshold ------
      0.057   12.4   0.7       0.19   10.6   0.1    2.1  2  RICTOR_N   Rapamycin-insensitive companion of mTOR, N-term
       0.24   10.1   3.9       0.42    9.3   0.1    2.6  3  p450       Cytochrome P450


Domain annotation for each model (and alignments):
>> Cnd1_N  non-SMC mitotic condensation complex subunit 1, N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.4   0.1   6.8e-61   1.2e-57       2     166 .]     112     276 ..     111     276 .. 0.96

  Alignments for each domain:
  == domain 1  score: 194.4 bits;  conditional E-value: 6.8e-61
      Cnd1_N   2 klksklldlllsglsallesvesdlessdeadsvashknaLemygfllqwlvealekessskssaasasargrkkk.kkkkkkkeeawdweaqrerile 99 
                 +++ k+ldl++sglsa+++ v++++e s+e+d++ +hk++Lemygfllqw ++++e ++++k++++++ +rg +k  k+k+++k+++wd++ q++++++
  KKY15029.1 112 QSLGKILDLIVSGLSAEADIVHAEIE-SEEQDAITHHKKLLEMYGFLLQWAISSVEVKAAEKPASSAPIRRGGGKGaKSKSTAKDGNWDSTGQIQTAMD 209
                 57889*********************.777***********************************99999666666779******************** PP

      Cnd1_N 100 liakvlelklsrlfqttserdeFislftrpaysllEneallKdksirdaifkvlclavkkhghalaa 166
                 +++kvl+lkl ++f tts+rd+F+slftr +y +lE+ea++K +s++++ fkvlc+avk+hgha++a
  KKY15029.1 210 TMCKVLKLKLGKVFLTTSDRDTFVSLFTRSVYLILESEARVKITSVKMFSFKVLCIAVKHHGHAFGA 276
                 ****************************************************************986 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       5.2   9.4e+03      80     130 ..     313     363 ..     309     372 .. 0.72
   2 !   16.5   0.0   3.8e-06    0.0068      19      87 ..     396     467 ..     373     481 .. 0.89
   3 ?   -3.4   0.0       4.8   8.6e+03      38      56 ..     993    1013 ..     988    1021 .. 0.78
   4 !  146.7   0.3   3.3e-46   5.8e-43       1     161 [.    1029    1188 ..    1029    1189 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 5.2
        Cnd1  80 aalteiseksenaiynllpdiisklsdalnecsewgqitilefLlsyipkd 130
                  +l e+s+k+ n   +  p++is +  +l e++    ++ + +L+++ +++
  KKY15029.1 313 EILRELSNKEFNSNDTKGPKSISTFIIKLSELEPRLVVKQMGLLAKFLDSE 363
                 567777888777777777788887777777777777777777777777666 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 3.8e-06
        Cnd1  19 veylvepLrkrLkDedpyVRktaaivvakL..ilndmvkekg.flselaklleDenprVvanalaalteise 87 
                 + ++ + L++r+ D++py R  a+ v  kL  +++++ k ++   +   + leD++++V+ na+ +l ++ +
  KKY15029.1 396 INAFFDTLEQRFLDTNPYCRCRAIQVYMKLcdLEQKFPKRRQaAADYAVRSLEDKSSNVRRNAIKLLGKLVS 467
                 7788999************************99999*9999977788889**************99988765 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.8
        Cnd1   38 RktaaivvakL..ilndmvke 56  
                  +  a +++akL  ++ +++++
  KKY15029.1  993 QAAATLCLAKLmcVSGEYCEK 1013
                  567999*****8888888876 PP

  == domain 4  score: 146.7 bits;  conditional E-value: 3.3e-46
        Cnd1    1 liRalairtlg..cirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteiseksenaiyn 95  
                  ++R++a+++lg  ++++++l++++++ L++rL+D d  V++t++++++ Lil++ vk+kg+l e+ak+leDe++++ ++a++++te+++k+ na+yn
  KKY15029.1 1029 VVRSNAVIALGdmAVCFNHLIDENTDFLYRRLNDADGSVKRTCLMTLTFLILAGQVKVKGQLGEMAKCLEDEDRKIADLARMFFTELATKD-NAVYN 1124
                  59*****************************************************************************************.***** PP

        Cnd1   96 llpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlqhansavvlaaikviL 161 
                   + d++s ls + + ++e++ + i++fL  +++kdk+ a++l ekl++rl+ ++++++++++++ L
  KKY15029.1 1125 HFVDMFSLLS-SDERLEEEAMRRIVKFLCGFVEKDKH-AKNLSEKLAARLNRCETERQWNDTAYAL 1188
                  **********.6799**********************.************************9987 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.098   1.7e+02       4      54 ..     356     421 ..     353     444 .. 0.66
   2 !   16.9   0.0   3.5e-06    0.0062       4      58 ..     403     465 ..     398     472 .. 0.79
   3 !   14.5   0.0   1.9e-05     0.034       5      76 ..     444     516 ..     440     524 .. 0.85
   4 ?   -3.3   0.0       6.8   1.2e+04      51      79 ..     567     596 ..     562     599 .. 0.69
   5 ?   -2.9   0.0       5.3   9.5e+03      17      31 ..     720     736 ..     716     745 .. 0.67
   6 !   22.8   0.0     5e-08   8.9e-05      12      84 ..     988    1072 ..     984    1076 .. 0.72
   7 !   21.6   0.0   1.1e-07   0.00021       1      75 [.    1015    1101 ..    1015    1110 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.098
      HEAT_2   4 LlqalendpdpevrraairaLg.........rignp..........ealpaLvellededpavRraaaea 54 
                 L ++l +++ + +r a+i++ g         +   +            +++L +   d++p+ R  a++ 
  KKY15029.1 356 LAKFL-DSEAYTLRCAVIEVCGnlicdlskqE---ErsenykiqinAFFDTLEQRFLDTNPYCRCRAIQV 421
                 55666.78888888888888886666553330...23334433333447888887788888888888875 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 3.5e-06
      HEAT_2   4 LlqalendpdpevrraairaLg.........rignpealpaLvellededpavRraaaeaLgai 58 
                 L q+   d +p+ r +ai++            ++ + a ++ v+ led++++vRr+a++ Lg++
  KKY15029.1 403 LEQRF-LDTNPYCRCRAIQVYMklcdleqkfPKRRQAAADYAVRSLEDKSSNVRRNAIKLLGKL 465
                 56666.58889999988887775556654333355699************************96 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 1.9e-05
      HEAT_2   5 lqalendpdpevrraairaLgrignpealpaLve.llededpavRraaae.aLgaigdpealpaLkellddddd 76 
                 +  l +d++ +vrr+ai+ Lg++ ++  +  ++   l+++++  R   ++  L a++ pe+ p L e+ +dd++
  KKY15029.1 444 VRSL-EDKSSNVRRNAIKLLGKLVSTHPFSVMHGgQLSHKEWSARLDTVDaELNALKPPEDTPGLSESKADDKV 516
                 5567.899999999999999999999999999997789999999999998569999999999999998777765 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 6.8
      HEAT_2  51 aaeaLgaigd.pealpaLkellddddddvv 79 
                  +eaL  i   ++a +  ++ll   ++++v
  KKY15029.1 567 YIEALRFIEAiHDASSTVCQLLSARNKSEV 596
                 578888887777888888888877766665 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 5.3
      HEAT_2  17 rraairaLg..rignpe 31 
                 rr ai++Lg  ++++pe
  KKY15029.1 720 RRGAIIVLGmiSLADPE 736
                 77777777755555555 PP

  == domain 6  score: 22.8 bits;  conditional E-value: 5e-08
      HEAT_2   12 pdpevrraairaLg.......rignpealpaLvell.ededpavRraaaeaLgaig....d..pealpaLkellddddddvvReaAa 84  
                  pd ++++aa  +L+       ++  ++ lp+L+ +l +++dp vR +a+ aLg ++    +  +e+ ++L ++l+d  d  v++  +
  KKY15029.1  988 PDRNLQAAATLCLAklmcvsgEY-CEKNLPLLITILeRSDDPVVRSNAVIALGDMAvcfnHliDENTDFLYRRLND-ADGSVKRTCL 1072
                  67788888888888543322111.23669*****9988999************9974454267999******9975.5566676655 PP

  == domain 7  score: 21.6 bits;  conditional E-value: 1.1e-07
      HEAT_2    1 ldaLlqalendpdpevrraairaLg......rignpealpaLvellededpavRraaaeaL......gaigdpealpaLkelldddd 75  
                  l++L+ +le++ dp vr +a++aLg      +   +e  + L + l+d+d  v r+  ++L      g+++ +  l   +++l d+d
  KKY15029.1 1015 LPLLITILERSDDPVVRSNAVIALGdmavcfNHLIDENTDFLYRRLNDADGSVKRTCLMTLtflilaGQVKVKGQLGEMAKCLEDED 1101
                  578999999999999999999999955543333335889999999999999999999999944444445566777777777765544 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0        10   1.8e+04       8      28 ..      58      78 ..      53      80 .. 0.72
   2 ?    3.4   0.0     0.063   1.1e+02       3      27 ..     354     378 ..     353     379 .. 0.90
   3 ?    0.2   0.0      0.67   1.2e+03       3      28 ..     401     426 ..     399     428 .. 0.80
   4 ?   -2.4   0.0       4.9   8.8e+03       9      21 ..     425     440 ..     419     441 .. 0.76
   5 !   13.8   0.0   2.8e-05     0.051       7      30 ..     445     468 ..     442     469 .. 0.90
   6 ?   -2.3   0.1       4.3   7.6e+03      13      27 ..     989    1003 ..     977    1004 .. 0.77
   7 !   14.5   0.1   1.7e-05      0.03       2      28 ..    1015    1042 ..    1015    1045 .. 0.95
   8 ?    2.4   0.0      0.13   2.4e+02       4      25 ..    1055    1076 ..    1054    1079 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 10
                HHT-SSHHHHHHHHHHHHHHH CS
        HEAT  8 llsDpspeVReaAakaLgala 28
                  + p+   R a++ +L  l+
  KKY15029.1 58 VAHNPDNLTRTASFDSLQFLL 78
                556788899999999987665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.063
                 HHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgal 27 
                  ll k l +++   R+a+++ +g+l
  KKY15029.1 354 GLLAKFLDSEAYTLRCAVIEVCGNL 378
                 5899999****************98 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.67
                 HHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgala 28 
                 ++l +   D++p  R+ A++   +l+
  KKY15029.1 401 DTLEQRFLDTNPYCRCRAIQVYMKLC 426
                 56778888**********99766666 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 4.9
                 HT-...SSHHHHHHHH CS
        HEAT   9 lsD...pspeVReaAa 21 
                 l+D   + p+ R+aAa
  KKY15029.1 425 LCDleqKFPKRRQAAA 440
                 46666688999***98 PP

  == domain 5  score: 13.8 bits;  conditional E-value: 2.8e-05
                 HHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   7 kllsDpspeVReaAakaLgalaev 30 
                 + l+D+s++VR++A+k Lg+l++ 
  KKY15029.1 445 RSLEDKSSNVRRNAIKLLGKLVST 468
                 569******************985 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 4.3
                  SHHHHHHHHHHHHHH CS
        HEAT   13 speVReaAakaLgal 27  
                  + +  +aA ++L++l
  KKY15029.1  989 DRNLQAAATLCLAKL 1003
                  5556789999*9988 PP

  == domain 7  score: 14.5 bits;  conditional E-value: 1.7e-05
                  HHHHHHHH.T-SSHHHHHHHHHHHHHHH CS
        HEAT    2 lPlllkll.sDpspeVReaAakaLgala 28  
                  lPll++ l ++++p VR++A+ aLg++a
  KKY15029.1 1015 LPLLITILeRSDDPVVRSNAVIALGDMA 1042
                  89*****99*****************98 PP

  == domain 8  score: 2.4 bits;  conditional E-value: 0.13
                  HHHHHHT-SSHHHHHHHHHHHH CS
        HEAT    4 lllkllsDpspeVReaAakaLg 25  
                  +l + l+D + +V ++++ +L+
  KKY15029.1 1055 FLYRRLNDADGSVKRTCLMTLT 1076
                  67889*************9996 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.2   0.00079       1.4     137     229 ..     337     435 ..     332     454 .. 0.73
   2 !    8.4   0.0   0.00037      0.67     115     181 ..     399     466 ..     395     485 .. 0.75
   3 !   13.8   0.2   8.9e-06     0.016      90     227 ..     987    1141 ..     974    1205 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00079
                 HHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHH.HHHHHH.....HCCCCCCC..HHHHHHHCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH CS
   Adaptin_N 137 ailklykkdpdllrkqlveeikellsdkdpgvvlaAv.alleei.....kkndrlll..kllpklvrrLcnllteldpwlqvkiiklltrlarqepeer 227
                  i+kl +++p l+ kq  + +  ++ d++   +++Av  ++  +     k+++r+      ++ ++  L++ + +++p+  ++ i++  +l++ e++ +
  KKY15029.1 337 FIIKLSELEPRLVVKQ--MGLLAKFLDSEAYTLRCAViEVCGNLicdlsKQEERSENykIQINAFFDTLEQRFLDTNPYCRCRAIQVYMKLCDLEQKFP 433
                 589999999***9998..5555555555555555555244444455558555555445467999*****************************999999 PP

                 .. CS
   Adaptin_N 228 sk 229
                 ++
  KKY15029.1 434 KR 435
                 76 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00037
                 HHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC..HHHHHHHCTT-SSHHHHHHHHHHHHHHHC CS
   Adaptin_N 115 lapaikkllkdrspyvrkkAalailklykkdpdllrkq..lveeikellsdkdpgvvlaAvalleeikk 181
                 +++++++   d++py r  A++  +kl +++++  ++    ++  + +l+dk+  v ++A++ll ++  
  KKY15029.1 399 FFDTLEQRFLDTNPYCRCRAIQVYMKLCDLEQKFPKRRqaAADYAVRSLEDKSSNVRRNAIKLLGKL-V 466
                 5667777788999999999999999999986665444334599999999999999999999999888.3 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 8.9e-06
                  SSSHHHHHHHHHHHCCC-..-CCCHHHHHHHHHHHHT.-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH.... CS
   Adaptin_N   90 dpnqlirglALrvLssir..vpelaedlapaikkllk.drspyvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleei.... 179 
                   p+ ++++ A  +L+++   + e +e+ +p + ++l+ +++p+vr++A++a+ ++  +  +l+ ++ ++ +   l+d d +v+++ +++l+++    
  KKY15029.1  987 YPDRNLQAAATLCLAKLMcvSGEYCEKNLPLLITILErSDDPVVRSNAVIALGDMAVCFNHLIDEN-TDFLYRRLNDADGSVKRTCLMTLTFLilag 1082
                  566666677766777766667777888888888888878888999999999999999999999888.999999999999999999999998888888 PP

                  ...............HCCCCCCCHHHHHHHCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH CS
   Adaptin_N  180 ...............kkndrlllkllpklvrrLcnllteldpwlqvkiiklltrlarqepeer 227 
                                 + +dr  ++l++ +++ L     + d+     ++++++ l+  e  e+
  KKY15029.1 1083 qvkvkgqlgemakclEDEDRKIADLARMFFTELA----TKDNAVYNHFVDMFSLLSSDERLEE 1141
                  8877777777774444444443377777777755....6666677777777776666555555 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.4   2.5e+03      29      55 .]     352     378 ..     341     378 .. 0.66
   2 ?    5.6   0.0     0.013        23      35      55 .]     445     465 ..     433     465 .. 0.90
   3 ?   -3.9   0.0        10   1.8e+04       3      14 ..     719     732 ..     718     740 .. 0.72
   4 !   16.6   0.2   4.8e-06    0.0086       3      54 ..     992    1040 ..     990    1041 .. 0.77
   5 ?   -1.4   0.0         2   3.5e+03      26      53 ..    1049    1076 ..    1046    1078 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.4
     HEAT_EZ  29 ilpaLlalLnddsd.eVRaaAagaLgnl 55 
                  + +L+++L d+++ + R+a++  +gnl
  KKY15029.1 352 QMGLLAKFL-DSEAyTLRCAVIEVCGNL 378
                 455666666.3455677*9999998886 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.013
     HEAT_EZ  35 alLnddsdeVRaaAagaLgnl 55 
                 + L+d+s++VR +A+  Lg+l
  KKY15029.1 445 RSLEDKSSNVRRNAIKLLGKL 465
                 67999999***********97 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 10
     HEAT_EZ   3 vRraAawaLGr..l 14 
                 +Rr+A+ +LG   l
  KKY15029.1 719 QRRGAIIVLGMisL 732
                 69999999997444 PP

  == domain 4  score: 16.6 bits;  conditional E-value: 4.8e-06
     HEAT_EZ    3 vRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeV.RaaAagaLgn 54  
                  +++aA ++L+      ++    + ++ lp+L+  L+ ++d+V R +A++aLg 
  KKY15029.1  992 LQAAATLCLA----KLMCVSGEYCEKNLPLLITILERSDDPVvRSNAVIALGD 1040
                  6888888995....45556667777999999999977777777********95 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 2
     HEAT_EZ   26 vpeilpaLlalLnddsdeVRaaAagaLg 53  
                  ++e  ++L ++Lnd + +V+ +++ +L+
  KKY15029.1 1049 IDENTDFLYRRLNDADGSVKRTCLMTLT 1076
                  66677889999999888***99999997 PP

>> Cnd3  Nuclear condensing complex subunits, C-term domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.18   3.2e+02      65     105 ..     440     480 ..     378     589 .. 0.72
   2 ?   -0.6   0.0      0.34   6.1e+02      41      69 ..     718     746 ..     708     748 .. 0.84
   3 !   17.9   0.9   7.6e-07    0.0014      39     152 ..     989    1083 ..     975    1162 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.18
                 HHHHHHHHHHS-HHHHHHHHHHHHHHHHHH-CGGGGGGHH. CS
        Cnd3  65 lklflqalskgneelkiialkaifDllllhglevldkekke 105
                  +  +++l+ + ++++  a+k +  l+++h+++v+   + +
  KKY15029.1 440 ADYAVRSLEDKSSNVRRNAIKLLGKLVSTHPFSVMHGGQLS 480
                 44445555655778888888888888888888888655444 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.34
                 HHHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
        Cnd3  41 airelglkcLglfclldkklakenlklfl 69 
                 + r+ ++  Lg  +l d ++a++ ++++l
  KKY15029.1 718 SQRRGAIIVLGMISLADPEIAIKEIDTML 746
                 558899****************9998766 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 7.6e-07
                  SHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHS.-HHHHHHHHHHHHHHHHHH-CGGGGGGHH..............HHHHHHHHHHC-TT-H CS
        Cnd3   39 eaairelglkcLglfclldkklakenlklflqalskg.neelkiialkaifDllllhglevldkekkedsdeeeeesessksllkllykaLdsednp 134 
                  +++++ ++  cL+ +++++ +++++nl+l++++l+++ ++ ++  a+ a+ D++  +   ++d+++                  ++ly+ L+++ + 
  KKY15029.1  989 DRNLQAAATLCLAKLMCVSGEYCEKNLPLLITILERSdDPVVRSNAVIALGDMAVCFNH-LIDENT------------------DFLYRRLNDA-DG 1065
                  788999*****************************887999**************9998.554433..................3444444333.24 PP

                  HHHHHHHHHHHHHHHHH- CS
        Cnd3  135 elqaiaaeglcKLllagi 152 
                  +++ +    l  L+lag 
  KKY15029.1 1066 SVKRTCLMTLTFLILAGQ 1083
                  444444444444444444 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   7.2e-05      0.13       6      76 ..     405     474 ..     400     481 .. 0.90
   2 !    6.4   0.0    0.0053       9.5       7      87 ..    1059    1159 ..    1055    1177 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.2e-05
     RTP1_C1   6 kdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevl 76 
                 +   d+ + +r ++++   kl+  ++ +  +  ++ ++  +++L+d+ s v  naik+L +L++++p +v+
  KKY15029.1 405 QRFLDTNPYCRCRAIQVYMKLCDLEQ-KFPKRRQAAADYAVRSLEDKSSNVRRNAIKLLGKLVSTHPFSVM 474
                 5667899999***********99997.77889999*******************************98887 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0053
     RTP1_C1    7 dlqdpllpvrahglvlLrkliekkske..............avldiekilkllleaLkdedsYvYLnaikgLvaLad..vfpeevlklLleey.... 83  
                   l+d    v+  +l++L+ li + + +              +  +i  +++++++ L+ +d  vY + + +++ L +  + +ee ++++++      
  KKY15029.1 1059 RLNDADGSVKRTCLMTLTFLILAGQVKvkgqlgemakcledEDRKIADLARMFFTELATKDNAVYNHFVDMFSLLSSdeRLEEEAMRRIVKFLcgfv 1155
                  6889999999999999999999998779999999999999888999*************************99998522556777776666655554 PP

     RTP1_C1   84 eeen 87  
                  e+ +
  KKY15029.1 1156 EKDK 1159
                  3333 PP

>> RICTOR_N  Rapamycin-insensitive companion of mTOR, N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00011      0.19       5      96 ..     377     466 ..     374     472 .. 0.87
   2 ?   -1.7   0.0       0.6   1.1e+03     274     325 ..     832     881 ..     823     903 .. 0.43

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
    RICTOR_N   5 ndLvkllkrhp.elkydlsleellkriqfmLldeskevraagyRilRylisdseslklllklkldiliirSLekdsksevEReqALkLirafl 96 
                 n +++l k+++ + +y++++++++ +++  +ld++  +r+ +  +   l+  ++++ + ++   d+ + rSLe +s  +  R  A+kL  +++
  KKY15029.1 377 NLICDLSKQEErSENYKIQINAFFDTLEQRFLDTNPYCRCRAIQVYMKLCDLEQKFPKRRQAAADYAV-RSLEDKS--SNVRRNAIKLLGKLV 466
                 667888887774778999***********************************************997.****665..444889999987765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.6
    RICTOR_N 274 ewsesflagrrltt....ransksqkkqeeneaeesaelkkkeserkrenlvdhyl 325
                 ++ +s++  r  t     r ++k+ + ++ +ea+++ e +++e    +e   +  +
  KKY15029.1 832 DVLCSDILRR-KTRavfqR-SQKETRRESTSEASNADEEQPRE----QEGSQKSTV 881
                 5555533333.33323321.22222222222222222222222....222333333 PP

>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.62   1.1e+03     145     250 ..     367     472 ..     321     494 .. 0.65
   2 ?    0.8   0.2      0.09   1.6e+02     301     339 ..     538     578 ..     529     586 .. 0.81
   3 ?    9.3   0.1   0.00023      0.42     113     234 ..    1044    1165 ..    1022    1209 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.62
                 HHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH....HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSC CS
        p450 145 lskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfp....llkylptkllrklkeavkklkdlldklieerretldsakksrr 239
                 l +a+++v+g+++   +    ++e++++++ ++++ ++ l++++ + + + +     + + +  l++k+ + +++++d++ + +e++ ++++++     
  KKY15029.1 367 LRCAVIEVCGNLICDLS---KQEERSENYKIQINAFFDTLEQRFLDTNPYCRcraiQVYMKLCDLEQKFPKRRQAAADYAVRSLEDKSSNVRRN---AI 459
                 56777777777777776...45555666777777777666555543333322211112234556677777777777777777777777777776...55 PP

                 SHHHHHHHHC..T CS
        p450 240 dfldalllak..k 250
                 ++l  l++++  +
  KKY15029.1 460 KLLGKLVSTHpfS 472
                 5555555555543 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.09
                 HHHHHHCCTTT..T-HHHHCCT-HHHHHHHHHHHHHSCSST CS
        p450 301 eEidevlgdkr..eptyddlqklpyldavikEtLRlhpvvp 339
                 eE   ++++++    t +++++l ++++   E+LR++ +++
  KKY15029.1 538 EEQAAAIEKAQkdAATSEMMNRLQLTRKYYIEALRFIEAIH 578
                 566667755555699*********************98765 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00023
                  THHHHHHHHHHHHHHHHHCCCCHCS.EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHH CS
        p450  113 sleelveeeaedlveklrkkagess.elditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkllrk 208 
                   ++ l++e ++ l+++l++  g+ + ++ +t  +   a  v  +  +g+  ++lede++ ++ ++ ++ +++l+++   ++++f +++ l+++++r 
  KKY15029.1 1044 CFNHLIDENTDFLYRRLNDADGSVKrTCLMTLTFLILAGQVKVKGQLGEMAKCLEDEDR-KIADLARMFFTELATKDNAVYNHFVDMFSLLSSDERL 1139
                  57788999999999999999999985444444444445555566678888899999955.*************************999********* PP

                  HHHHHHHHHHHHHHHHHHHHHCHCHC CS
        p450  209 lkeavkklkdlldklieerretldsa 234 
                   +ea++++ ++l  ++e+ ++  + +
  KKY15029.1 1140 EEEAMRRIVKFLCGFVEKDKHAKNLS 1165
                  ****************9988766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1016  (0.056668); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.51
# Mc/sec: 7227.95
//
Query:       KKY15030.1  [L=343]
Description: putative cell cycle protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-24   84.2   0.0    2.9e-19   69.5   0.0    3.0  3  Pkinase         Protein kinase domain
     0.0075   15.6   0.0       0.81    8.9   0.0    2.2  2  Pkinase_Tyr     Protein tyrosine kinase
  ------ inclusion threshold ------
      0.033   12.6   1.1      0.051   12.0   1.1    1.2  1  Adeno_terminal  Adenoviral DNA terminal protein
       0.49   10.2   7.3        2.6    7.9   5.9    2.1  2  Sigma70_ner     Sigma-70, non-essential region


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   7.3e-05      0.33       1      26 [.      49      74 ..      49      93 .. 0.86
   2 ?    0.6   0.0     0.067     3e+02      19      56 ..     108     141 ..     100     145 .. 0.80
   3 !   69.5   0.0   6.4e-23   2.9e-19     151     264 .]     177     320 ..     164     320 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7.3e-05
                EEEEEEEEEESSEEEEEEEETTTTEE CS
     Pkinase  1 yekleklGeGsfGkVykaveketgki 26
                y+ ++++GeG+f++Vykav+ + +++
  KKY15030.1 49 YRLINRIGEGTFSTVYKAVDLRHNDE 74
                677899*************9887765 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.067
                 EETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS CS
     Pkinase  19 veketgkivAvKkikkekakkkkekkvlrEikilkklk 56 
                 ++k  ++ vA+Kki + +       ++++E+++l+ l+
  KKY15030.1 108 KRKPAQRFVALKKIYVTSSPM----RIQNELELLHDLR 141
                 66788999******9987665....5779999999886 PP

  == domain 3  score: 69.5 bits;  conditional E-value: 6.4e-23
                 SCSBCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.......SHH...HHHTTS........ CS
     Pkinase 151 sskltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.......etkeklpeasei........ 233
                  sk  ++ gt+ ++APEvl k ++ ++ +D+Ws+Gvil++ll+++ pf ++ ++ ++  el  ++  +++                    +        
  KKY15030.1 177 PSKRANRAGTRGFRAPEVLlKCTSQTTRIDIWSAGVILLTLLARRFPFFNSADDVDAMIELSSIFGRRRMKAvaalhgsV----------Fetnietvg 265
                 44578899***********899999************************7777666666655532222222222233341..........133345556 PP

                 ........................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 ........................seeakdllkkllkkdpkkRltaeellqhpyl 264
                                         +++a+++l+ ll+ dp+kRl+a+e+lqh++l
  KKY15030.1 266 ekgytwekiilwascrekeplspaEQQAIRFLNALLELDPTKRLSAKEALQHEFL 320
                 667777777*******************************************996 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0035        16       3      30 ..      51      83 ..      49     134 .. 0.75
   2 !    8.9   0.0   0.00018      0.81     155     200 ..     173     219 ..     158     256 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0035
                 EEEEEEEESSEEEEEEEEET.....TTTSSEEE CS
  Pkinase_Tyr  3 lgkklGeGafGkVvegtlkg.....ekekkevk 30
                 l +++GeG+f++V+++   +     e++k++ +
   KKY15030.1 51 LINRIGEGTFSTVYKAVDLRhndewETSKENND 83
                 6789***********975544555544444444 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00018
                  TSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 155 kddeyvkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwEift 200
                  +d++ +k+ ++     + apE+l +++  t++ D+Ws Gv+l  ++ 
   KKY15030.1 173 HDQRPSKRANRAGTRGFRAPEVLLKCTsQTTRIDIWSAGVILLTLLA 219
                  555567777777788899****9988758999*********987765 PP

>> Adeno_terminal  Adenoviral DNA terminal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.1   1.1e-05     0.051     328     373 ..       7      52 ..       2      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.1e-05
  Adeno_terminal 328 GiaaeeeeeeeeeeeeledevissvaelirlLeeeLseearrself 373
                       a++++e + ee ee ede+ ++vae +r Lee  ++ +++  l 
      KKY15030.1   7 AQAQMDDETDAEESEESEDEIDETVAEDMRRLEESFAGISKQYRLI 52 
                     579*****999***********************999888877765 PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   5.9   0.00059       2.6      45      90 ..       9      55 ..       2      74 .. 0.69
   2 ?    1.4   0.1     0.058   2.6e+02      45      84 ..      77     122 ..      65     128 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00059
  Sigma70_ner 45 eeeeeee.edddeeeseseaadeeelkeealekfeelreqyeklrka 90
                 ++ ++e+  ++ ee++++ ++  +e+  +  e f+ +++qy+ ++++
   KKY15030.1  9 AQMDDETdAEESEESEDEIDETVAEDMRRLEESFAGISKQYRLINRI 55
                 22222221222246778999999******************988875 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.058
  Sigma70_ner  45 eeeeeeeeddd......eeeseseaadeeelkeealekfeelreqy 84 
                  +++e+++ d d       ++++ ++ + ++ k + +++f +l++ y
   KKY15030.1  77 TSKENNDVDIDapvtkrRKTENLSTSQPSPVKRKPAQRFVALKKIY 122
                  2222222222245555567888999999***************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2798.11
//
Query:       KKY15031.1  [L=244]
Description: hypothetical protein UCRPC4_g06459 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-34  119.3   7.6    2.3e-19   70.2   4.0    2.1  2  DASH_Spc34  DASH complex subunit Spc34
  ------ inclusion threshold ------
      0.029   14.2   1.7      0.052   13.4   1.7    1.4  1  DASH_Spc19  Spc19
      0.036   13.9   0.6      0.058   13.2   0.6    1.3  1  DUF724      Protein of unknown function (DUF724)
       0.16   12.0   5.3       0.18   11.9   0.0    2.8  3  DUF465      Protein of unknown function (DUF465)
       0.44   10.7   2.7       0.43   10.7   0.9    1.8  2  Fib_alpha   Fibrinogen alpha/beta chain family


Domain annotation for each model (and alignments):
>> DASH_Spc34  DASH complex subunit Spc34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.1   4.1e-17   1.5e-13       1      65 [.       4      76 ..       4     125 .. 0.79
   2 !   70.2   4.0   6.4e-23   2.3e-19     154     254 ..     126     227 ..      86     228 .. 0.85

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 4.1e-17
  DASH_Spc34  1 LdscLeeikqSveSisslk......FkpPgIFtNAlvkkddItkLirDtepeeeaLfkidk..vekkpeRkDG 65
                L+s L++i++S+++i +l       F+p   FtNA++ ++dIt+LirDte +e+aLfk++   + ++++R   
  KKY15031.1  4 LESNLQQISESAQAIGNLSsvfrlfFPPSSKFTNAILGNHDITTLIRDTETHERALFKLHSdgQSGTLRRASR 76
                7899*********99886555555599999*****************************99553344444433 PP

  == domain 2  score: 70.2 bits;  conditional E-value: 6.4e-23
  DASH_Spc34 154 dfdvelllkvleelltkyplleakekieelreeYeelseeieeleaeiaeQkkqLeaqnknesesssedds.esetskskdvdelirkEeeeIeeLerk 251
                   +ve+ll+++e+l+++yp+++a  ki  lr++Y+ + ++i+++ea++a+Q++q+ ++n+++++ss + d+ e+e++++ ++++++  Ee+eI+eLe++
  KKY15031.1 126 GINVEVLLQGAEKLCDVYPIEGATPKIISLRSRYHAVAQSIAQYEARVAQQTEQMGRMNRSHDYSSRYIDDeEDEAEDQIVTEQVLLLEEQEIRELEAR 224
                 5799***********************************************************9998766505566669999****************9 PP

  DASH_Spc34 252 lke 254
                 +k 
  KKY15031.1 225 KKA 227
                 975 PP

>> DASH_Spc19  Spc19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.7   1.4e-05     0.052      74     155 ..     150     233 ..     145     235 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHH......HHHHT-XXXXXXXXXXXX....XXXX.....XXXXXXXXXXXXXXXXXXXXXXXX CS
  DASH_Spc19  74 keleklerreetLkaklelqegrlsnaesskkeeeeseeskeeeeeeenkeeekskkk.....ltkeelerlkkLkqkKerLkytle 155
                  ++ +l++r ++  + +++ e r+ +++++  + +   +s +++++  ++ee++++++     +   e++++++L ++K++L+++++
  KKY15031.1 150 PKIISLRSRYHAVAQSIAQYEARVAQQTEQMGRMN---RSHDYSSRYIDDEEDEAEDQivteqVLLLEEQEIRELEARKKALEERVS 233
                 57888999999999999999999999644443333...33333344444444444444432444444559**************997 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.6   1.6e-05     0.058      89     180 ..     144     238 ..     129     243 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.6e-05
      DUF724  89 alqsrlnkLlslkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallk...ekkeaadkeiarlkseaekleeeledveqe 180
                  ++    k++sl++++  +++ + ++e +++++++++ +++ ++d  ++ i + e +++      +    +++ei +l++ +++lee+++ +e++
  KKY15031.1 144 PIEGATPKIISLRSRYHAVAQSIAQYEARVAQQTEQMGRMNRSHDYSSRYIDDEEDEAEDQIvteQVLLLEEQEIRELEARKKALEERVSGMEKD 238
                 555566799****************************************99976665543223334456799******************99987 PP

>> DUF465  Protein of unknown function (DUF465)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.9e-05      0.18       4      32 ..     155     183 ..     153     185 .. 0.93
   2 ?   -2.7   0.2       1.8   6.4e+03      15      23 ..     194     202 ..     191     212 .. 0.53
   3 ?    1.4   0.6     0.095   3.4e+02      12      29 ..     215     232 ..     214     238 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.9e-05
                 HHHHHHHHHHHHHHHHTT-.S-HHHHHHH CS
      DUF465   4 LeeeHeeLdkeIhalearpvtddleierL 32 
                 L+ +++++ ++I++ ear+++  +++ r+
  KKY15031.1 155 LRSRYHAVAQSIAQYEARVAQQTEQMGRM 183
                 99******************999999887 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.8
                 HHHHHTT-. CS
      DUF465  15 Ihalearpv 23 
                 I+++e   +
  KKY15031.1 194 IDDEEDEAE 202
                 556665555 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.095
                 HHHHHHHHTT-.S-HHHH CS
      DUF465  12 dkeIhalearpvtddlei 29 
                 ++eI++lear  + ++++
  KKY15031.1 215 EQEIRELEARKKALEERV 232
                 689999999887666655 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.3   4.8e+03      40      56 ..       4      20 ..       2      26 .. 0.62
   2 ?   10.7   0.9   0.00012      0.43      35     124 ..     150     238 ..     145     243 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.3
                CCCCCCCCCCHHHHHHH CS
   Fib_alpha 40 leneleeisnstkeaee 56
                le++l++is+s + + +
  KKY15031.1  4 LESNLQQISESAQAIGN 20
                56667777666665544 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00012
                 HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  35 kdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqd 124
                  ++ +l+++ + +++s  + e  v + ++++ + ++s++ ++++i + ++e e +++  ++ +  +e++ir+L    +++e++++ +e+d
  KKY15031.1 150 PKIISLRSRYHAVAQSIAQYEARVAQQTEQMGRMNRSHDYSSRYIDDEEDEAE-DQIVTEQVLLLEEQEIRELEARKKALEERVSGMEKD 238
                 57788999999999999999999999999998888888889************.888889999999***************999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1053  (0.0587317); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1662.69
//
Query:       KKY15032.1  [L=620]
Description: putative 26s proteasome non-atpase regulatory subunit 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-26   90.9   2.1    1.4e-25   89.5   2.1    1.8  1  Rpn3_C    Proteasome regulatory subunit C-terminal
    2.4e-21   76.2   0.1    7.5e-21   74.6   0.0    1.9  2  PCI       PCI domain


Domain annotation for each model (and alignments):
>> Rpn3_C  Proteasome regulatory subunit C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   2.1   1.5e-29   1.4e-25       1      67 []     546     610 ..     546     612 .. 0.97

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 1.5e-29
      Rpn3_C   1 DvYsTkePqeaFdeRIkFclqlHneavkAMRYpedakkkelesaeearerqqeeelakelededldD 67 
                 DvY T+eP eaF++RI+ cl+lH+e+vkAMR+p+++++ el++a+earer  e+elake++++++dD
  KKY15032.1 546 DVYTTREPGEAFHDRIRACLTLHDESVKAMRFPMNQHRLELKNAQEARER--ERELAKEIQEGEMDD 610
                 9*************************************************..**********88776 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.4   1.3e+04      39      70 ..     162     193 ..     152     211 .. 0.68
   2 !   74.6   0.0   8.4e-25   7.5e-21       2     102 ..     440     540 ..     439     543 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHHHCESEEEHHHHHHHH CS
         PCI  39 lesLekkvrerllrqvskiyssislerlakll 70 
                 ++++  + ++r+lr +s   + ++ + +a+ +
  KKY15032.1 162 VSQFDPRFTLRVLRNISSVRKHLTSAVIANVV 193
                 55566666777777777766666666666655 PP

  == domain 2  score: 74.6 bits;  conditional E-value: 8.4e-25
                 HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSH.HHHHHHHHHHHHTTSSSEEEETTTT CS
         PCI   2 sysdllkalrsgnlsgfseelkdleeelladdglaqllesLekkvrerllrqvskiyssislerlaklldlsv.devEkilvklIrdgeirakidqesg 99 
                 +y +l++a+  g+l++f ++++++ +  +++dg+++l+ +L+++v+++ +r++s++ys+isl ++   l+l++ + +E+i++k+Irdg i+a+id+e g
  KKY15032.1 440 PYLELVQAVSAGDLDSFLTLVQKH-NATFRRDGTYTLILRLRQNVIKTGIRMMSLSYSRISLRDICLRLGLDSeESAEYIVAKAIRDGVIEATIDHERG 537
                 799*********************.************************************************999*********************99 PP

                 EEE CS
         PCI 100 ivv 102
                  + 
  KKY15032.1 538 FMK 540
                 875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1012  (0.0564449); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.48
# Mc/sec: 3913.70
//
Query:       KKY15033.1  [L=542]
Description: putative t-complex protein 1 subunit zeta [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.1e-162  542.1   1.0   1.3e-162  541.9   1.0    1.0  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
      0.016   13.7   0.0      0.024   13.2   0.0    1.2  1  Herpes_UL6  Herpesvirus UL6 like


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  541.9   1.0  1.4e-166  1.3e-162       1     490 [.      30     527 ..      30     528 .. 0.98

  Alignments for each domain:
  == domain 1  score: 541.9 bits;  conditional E-value: 1.4e-166
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekale 99 
                 l+d++k++lGPkG+ Kmlv+ +g +++T+DGa++lke++i++P+a ++++aa++qd+ vGDGTt+vv+++geLl++a ++i++g+hp++i++gye a+ 
  KKY15033.1  30 LQDVIKSNLGPKGTIKMLVDGAGGIKLTKDGAVLLKEMQITNPTAVMIARAATAQDDIVGDGTTSVVLMVGELLKQADRHIQEGLHPRVITDGYEIAKT 128
                 789************************************************************************************************ PP

                 HHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCSEECSCCCEECCCCEECECTTSEEESEEEESS--SSTTSSCE CS
  Cpn60_TCP1 100 kaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAvklieenekeldlgrikvvkieggsledselveGlvldkgvlspdmpkk 198
                 ++l++L+e +++ ++   dre Ll+va+tsls+kl s+ ae+l+  +vdAv++i+    + dl++++++k++++  +d++l++Gl+ld+g ++pdmpk+
  KKY15033.1 129 ETLKFLDEFKIQREV---DRELLLSVAKTSLSTKLNSTLAEHLTPSIVDAVLAIQRPPAKPDLHMVEIMKMQHRTTSDTQLIRGLALDHGARHPDMPKR 224
                 *********555555...59*******************************9998888999************************************** PP

                 EECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECE..........EEESS-B-HHHHHHHHHCT-EEE-S--HHHHH CS
  Cpn60_TCP1 199 lenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnv..........vvcqkgiddlalhflakngilalrrvkkkdle 287
                 +ena++l+l+vsLe+ek+e+++++ +++ae+++kl+ +e+++++e+l+kii+++ +v          v++qkgid+l+l++l+kngilalrr+k++++e
  KKY15033.1 225 VENAYILTLNVSLEYEKSEINSGFFYNSAEQRDKLVASERRFVDEKLRKIIDLKNQVcgedpkknfvVINQKGIDPLSLDVLVKNGILALRRAKRRNME 323
                 *************************************************************************************************** PP

                 HHHHHHT--EBSCGGGGGCGC-EEEEEEEECCETTCCEEEEECESSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHH CS
  Cpn60_TCP1 288 rlakatGatavssledltpeelGtakkveeekigsekttiieevksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakk 386
                 rl  ++G++a +s +dl+p+ lG+a+ v+e+++g+ek+t++eevk++k++t+l++g++++++++i +a++d+l++v n+i d++vvpG+Ga+ +++a++
  KKY15033.1 324 RLQLICGGQAQNSADDLDPSVLGWAGLVYEHTLGEEKYTFVEEVKDPKSVTLLIKGPNQHTINQITDAVRDGLRAVYNTIVDRCVVPGAGAFQIAAAAH 422
                 *************************************************************************************************** PP

                 HHCCC..CTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHHHTTXTTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCE CS
  Cpn60_TCP1 387 lkeya..ksvsgeeqlaieafakALevipktLaeNaGldpievlaklraahnkgekelgidvesgeiidlveagvvDplkvkrqalksAteaastiLri 483
                 l+++a  k+v+g+ ++++ afa+AL++ipktLa N+G+d ++ la l+++ + g+  +g+d+++ge+ d+v++gv+D ++v r+++ s+  +as +L +
  KKY15033.1 423 LSSEAfrKTVKGKAKWGVAAFADALLIIPKTLAANSGHDIQDALATLHDEYADGN-VVGLDLTTGEAMDPVQEGVFDGFRVIRNCIASSQGIASNLLLC 520
                 *96662266**********************************************.******************************************* PP

                 EEEEXXX CS
  Cpn60_TCP1 484 deiikak 490
                 de +ka+
  KKY15033.1 521 DELLKAR 527
                 ***9987 PP

>> Herpes_UL6  Herpesvirus UL6 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.7e-06     0.024     275     363 ..     351     433 ..     320     441 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.7e-06
  Herpes_UL6 275 vvkkilgeleee..skksdakkeLlklliklkenktvggitdvVedfleevsnslvdknklldasqpGfgkggasaqssekteqglkksvs 363
                 v+++ lge++ +  ++ +d+k   + llik  ++ t++ itd V+d l+ v n +vd+        pG g  + +a +++  +++++k+v+
  KKY15033.1 351 VYEHTLGEEKYTfvEEVKDPKS--VTLLIKGPNQHTINQITDAVRDGLRAVYNTIVDRCVV-----PGAGAFQ-IAAAAHLSSEAFRKTVK 433
                 5555565555432256789999..*********************************8777.....5555554.23444555556666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 3518.76
//
Query:       KKY15034.1  [L=479]
Description: putative pre-rrna processing nucleolar protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      6e-88  294.2   0.0      6e-88  294.2   0.0    1.7  2  Nop           snoRNA binding domain, fibrillarin
  ------ inclusion threshold ------
      0.086   13.1   0.1       0.14   12.4   0.1    1.2  1  DMT_YdcZ      Putative inner membrane exporter, YdcZ
       0.56    9.8  13.6       0.97    9.0  13.6    1.3  1  VIR_N         Virilizer, N-terminal


Domain annotation for each model (and alignments):
>> Nop  snoRNA binding domain, fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.2   0.0     1e-91     6e-88       2     229 ..     131     363 ..     130     364 .. 0.93
   2 ?   -4.2   2.9       1.6   9.3e+03      47      81 ..     414     450 ..     398     474 .. 0.43

  Alignments for each domain:
  == domain 1  score: 294.2 bits;  conditional E-value: 1e-91
                 HHHHHHHHHHHHHHHHHHHTTTSTCHHHHS-SHHHHHHHHHHCCCCHCCT.HH..TT........HHHHHHHHHHHHCHHHH-SSS-S-HHHHHHHHHH CS
         Nop   2 ldeidkeintlhkrvrewYswhFpELeslvkdnleYakvvkligneredlekk..ee.......deelakevimaakvtastsmgaelseedlknikel 91 
                 ld++dk int+++rvrewYswhFpEL ++v+dn +Ya+v+ +++ ++++l+++  ++       de++ak++i aa++    smg+++ ++d++n+ ++
  KKY15034.1 131 LDQLDKAINTFSMRVREWYSWHFPELVKIVSDNQKYARVALFVK-DKKTLSEDslHDlaslvgdDEDVAKAIIHAAQT----SMGQDIGDSDMENVTHF 224
                 89******************************************.777775553433777777555588888888888....***************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHSSHHHHHCS-HHHHTTTT-HHHHCCCHH.T---SSSCHHHCSHHHHHTS-CCCH CS
         Nop  92 cdrvleleelrkelleYlesrmsaiAPNlsaLvGeevaarLishaGgLtnLakmPastiqilGaekalfralk.kkntpkyGliyhselvqkatppklk 189
                 ++rv++l+++rk+l++Yl s+m ++APNlsaL+G+ v+arLishaG+LtnL+k+Past+qilGaekalfralk k+ntpkyGl+yhs+++++a  +k+k
  KKY15034.1 225 AERVVSLTDYRKTLHTYLVSKMGVVAPNLSALIGDIVGARLISHAGSLTNLSKYPASTVQILGAEKALFRALKtKGNTPKYGLLYHSSFIGRA-GQKNK 322
                 *************************************************************************777***************88.***** PP

                 HHHHHHHHHHHHHHHHHHHTT---.-SHHHHHHHHHHHHHH CS
         Nop 190 kkiaRllaaKvalaaRiDafsekd.gslGkklreeiekklk 229
                 ++i+R+la+K+++a+RiD+fse++ + +G++l++++e++l+
  KKY15034.1 323 GRISRFLANKCSIASRIDNFSETPsTIFGEALKKQVEERLE 363
                 ********************9999999************97 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 1.6
                 CHCCT.HHTT....HH..HHHHHHHHHHCHHHH-SSS-S- CS
         Nop  47 eredlekkee...dee..lakevimaakvtastsmgaels 81 
                 +++d ++k +   d++   ++ev +++  +a  + ++e +
  KKY15034.1 414 QKKDKKDK-KvkkDKKrkRDSEVAETVDGEA--EAKKEKK 450
                 33333222.1222222123333333333322..2222222 PP

>> DMT_YdcZ  Putative inner membrane exporter, YdcZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   2.3e-05      0.14      80     130 ..     237     288 ..     236     292 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.3e-05
    DMT_YdcZ  80 tlnillvpklGaaltvvlvllGqllaslliDhfGlf.gvekrplsltrllGl 130
                 tl ++lv+k+G+++  + +l+G ++++ li h G + ++ k p s  ++lG+
  KKY15034.1 237 TLHTYLVSKMGVVAPNLSALIGDIVGARLISHAGSLtNLSKYPASTVQILGA 288
                 57899*****************************762678999999999986 PP

>> VIR_N  Virilizer, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  13.6   0.00016      0.97     145     256 ..     357     471 ..     335     476 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00016
       VIR_N 145 elekedqynaspvrpeprePrtpelipaytgnvastpPpdddeeedaavpetveeekeensekredyleeesPeertslkaeekdseaereer....es 239
                 ++e+   + +s  +p ++e    + + +  +n+   +P dd+ +++ a p++v++++++++ k+++ +++++  +r s +ae  d eae +++    ++
  KKY15034.1 357 QVEERLEFYSSGAQPTKNETAMRNAMDSVLANMDIDNP-DDNIDSNEAPPHAVQRQEKQKKDKKDKKVKKDKKRKRDSEVAETVDGEAEAKKEkkkkRH 454
                 55666678888999999999999999999999998888.888899999999999666666666666666666668888888877777666666222234 PP

       VIR_N 240 seeierdeeesdvrere 256
                 se  e+  ees+ ++++
  KKY15034.1 455 SEVSEAGAEESKKKKKK 471
                 44444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2340  (0.130515); expected 358.6 (0.02)
Passed bias filter:                      699  (0.0389871); expected 358.6 (0.02)
Passed Vit filter:                       156  (0.00870099); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.50
# Mc/sec: 2895.99
//
Query:       KKY15035.1  [L=830]
Description: putative golgi complex component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-50  169.4   0.6    8.2e-50  168.6   0.6    1.5  1  Sec34     Sec34-like family


Domain annotation for each model (and alignments):
>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.6   0.6   4.6e-54   8.2e-50       1     148 [.      63     211 ..      63     212 .. 0.99

  Alignments for each domain:
  == domain 1  score: 168.6 bits;  conditional E-value: 4.6e-54
       Sec34   1 yldqLeskeeecdelleqtdealeqLeeleekfksvsektsslheaceqlleeqkrleelaeeieekLkyFeeldpitrkLnspgss.lvksesFlemL 98 
                 yldqL+++++++d+ll++t  +l++L+el+ +fk+v+++ts++++++e ll++q r e+la +i+++L+y+e+l+pitr+Ln+p++  +v+s+ F+emL
  KKY15035.1  63 YLDQLDASRAHLDSLLSDTAFTLDTLSELSASFKTVEAQTSAIQTQSEGLLTDQLRTEKLAGTIKDNLRYYEYLEPITRRLNAPSAGsMVRSRGFSEML 161
                 89************************************************************************************************* PP

       Sec34  99 kklDeclefleehpefkeaetYlirfkqcltrAltliknyvvnslkelte 148
                  +lD++++++++hp++kea+tY++r+kq+ltrAltl++ +++n+l+++++
  KKY15035.1 162 AQLDKAIDYMQTHPKHKEADTYRSRYKQLLTRALTLVRGHFINALRDIAA 211
                 **********************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (830 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       739  (0.0412181); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.50
# Mc/sec: 5037.18
//
Query:       KKY15036.1  [L=540]
Description: putative mitochondrial protein fmp25 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-28   98.9   0.5    7.5e-08   32.9   0.0    7.6  6  RCC1      Regulator of chromosome condensation (RCC1) repeat
    3.1e-22   77.8  13.3      7e-11   41.6   0.0    7.1  7  RCC1_2    Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0022        20       4      33 ..      71     101 ..      70     106 .. 0.75
   2 !    5.3   0.0    0.0035        31      25      50 .]     203     226 ..     184     226 .. 0.82
   3 !   10.6   0.0   7.5e-05      0.67      13      50 .]     246     290 ..     244     290 .. 0.69
   4 !   32.9   0.0   8.4e-12   7.5e-08       1      49 [.     293     351 ..     293     352 .. 0.84
   5 !    8.8   0.1   0.00028       2.5       5      47 ..     379     435 ..     377     438 .. 0.81
   6 !   24.0   0.1   4.8e-09   4.3e-05       7      34 ..     465     492 ..     464     537 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0022
                 EEEEE--GGGTTSSSS---E.EEEEE-GGGT CS
        RCC1   4 VysWGrndyGqLGlgttesv.lvPtkvegls 33 
                 Vy+WG+n+       ++e    +P+++++++
  KKY15036.1  71 VYAWGSNTGKVVAPDSNEAIiKTPRRIPFFD 101
                 9****99977777766655557788888775 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0035
                 EEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1  25 vPtkveglsgnrvvkvacGddhtval 50 
                  P k+ + +  rv+++++G dh ++l
  KKY15036.1 203 QPEKLGFGE--RVTAITAGLDHALLL 226
                 477776655..***********9875 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 7.5e-05
                 GTTSSSS-..--EEEE.......EE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1  13 GqLGlgtt..esvlvP.......tkveglsgnrvvkvacGddhtval 50 
                 GqLG +     ++  P        ++ +l+g ++++va+Gd+h+++l
  KKY15036.1 246 GQLGVPGLtwATR--PrgdidmcHEIGTLKGFDAKSVAAGDYHSLVL 290
                 6777744434444..54444444678888999************986 PP

  == domain 4  score: 32.9 bits;  conditional E-value: 8.4e-12
                 TTEEEEEE--GGGTTSS..SS-.--EEEEEE-GGGTTS.......-EEEEEEETTEEEE CS
        RCC1   1 dGrVysWGrndyGqLGl..gtt.esvlvPtkveglsgn.......rvvkvacGddhtva 49 
                 +Gr++s+G n+ GqLG   g++  + + P++v+ ++         rv+++a+G+  t++
  KKY15036.1 293 EGRLFSFGDNTSGQLGFetGPEtACIDAPSLVPISRLYqgasqapRVTSIAAGGLNTFF 351
                 7****************776665666889999776655778889**********99986 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.00028
                 EEEE--GGGTTSSSS-.--EEEEEE-GGGTTS.............-EEEEEEETTEE CS
        RCC1   5 ysWGrndyGqLGlgtt.esvlvPtkveglsgn.............rvvkvacGddht 47 
                 +++G++ +G LG+g   + +  P kv++lsg              r   ++ G+ h+
  KKY15036.1 379 WACGQGIKGTLGNGRWtHVQGPPAKVPLLSGLfeydetenatipiRLANISVGSTHV 435
                 89***********99854445589999999888888888888888888888888886 PP

  == domain 6  score: 24.0 bits;  conditional E-value: 4.8e-09
                 EE--GGGTTSSSS---EEEEEE-GGGTT CS
        RCC1   7 WGrndyGqLGlgttesvlvPtkveglsg 34 
                 WG+n+++qLG+g++++v+ P  +++l+ 
  KKY15036.1 465 WGCNEHYQLGTGKRNNVNAPIYIAPLDT 492
                 *****************99999988764 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.2    0.0027        24      20      27 ..      71      78 ..      63      79 .. 0.87
   2 !    3.9   0.0    0.0054        48       9      25 ..     113     129 ..     112     132 .. 0.89
   3 !    6.4   0.0    0.0009       8.1       2      22 ..     148     168 ..     147     169 .. 0.92
   4 !   20.3   0.1   3.9e-08   0.00035       1      23 [.     213     235 ..     213     237 .. 0.95
   5 !   41.6   0.0   7.8e-15     7e-11       2      30 .]     278     306 ..     277     306 .. 0.98
   6 !    3.2   0.0     0.009        81       1      21 [.     339     359 ..     339     367 .. 0.87
   7 ?   -1.3   0.3      0.23   2.1e+03      23      30 .]     465     472 ..     465     472 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0027
      RCC1_2 20 VlcWGsNs 27
                V++WGsN+
  KKY15036.1 71 VYAWGSNT 78
                9******7 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0054
      RCC1_2   9 yHscaLtedGeVlcWGs 25 
                 ++  a+te+G++l WG+
  KKY15036.1 113 NFGAAITETGDLLQWGR 129
                 6788*********9996 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0009
      RCC1_2   2 ksvsaGdyHscaLtedGeVlc 22 
                 +s+++ ++  +aL+ +GeV++
  KKY15036.1 148 VSLAISRDRVLALSKSGEVYS 168
                 688999999***********8 PP

  == domain 4  score: 20.3 bits;  conditional E-value: 3.9e-08
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcW 23 
                 V+++ aG +H++ Lt++G+V+++
  KKY15036.1 213 VTAITAGLDHALLLTNSGRVFST 235
                 789******************97 PP

  == domain 5  score: 41.6 bits;  conditional E-value: 7.8e-15
      RCC1_2   2 ksvsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                 ksv+aGdyHs++L+ +G+++++G+N++GQ
  KKY15036.1 278 KSVAAGDYHSLVLDKEGRLFSFGDNTSGQ 306
                 89**************************9 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.009
      RCC1_2   1 VksvsaGdyHscaLtedGeVl 21 
                 V+s++aG+  +++ ++  +Vl
  KKY15036.1 339 VTSIAAGGLNTFFTVDATRVL 359
                 89*********9999988887 PP

  == domain 7  score: -1.3 bits;  conditional E-value: 0.23
      RCC1_2  23 WGsNsdGQ 30 
                 WG+N++ Q
  KKY15036.1 465 WGCNEHYQ 472
                 ****9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 3304.34
//
Query:       KKY15037.1  [L=304]
Description: putative histone chaperone asf1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-73  246.1   0.0    1.7e-73  245.7   0.0    1.2  1  ASF1_hist_chap  ASF1 like histone chaperone
  ------ inclusion threshold ------
      0.096   10.9  23.1       0.12   10.5  23.1    1.0  1  Nop14           Nop14-like family
       0.18   11.8   0.0       0.31   11.0   0.0    1.3  1  FliW            FliW protein


Domain annotation for each model (and alignments):
>> ASF1_hist_chap  ASF1 like histone chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.7   0.0   2.8e-77   1.7e-73       1     154 []       1     154 [.       1     154 [. 1.00

  Alignments for each domain:
  == domain 1  score: 245.7 bits;  conditional E-value: 2.8e-77
                     X-SEEEEEEEESS-SEETTS-EEEEEEEEESS--SS-EEEEEEEESSSSSGGGEEEEEEEEEES--SEEEEEEEEE----GGGSSSGGGSEEEEE CS
  ASF1_hist_chap   1 mslvnvtnvkvlnnpakfsdpfkfeitfeclekLeedlewkliyvgsaeseeedqeLdsvlvGPikvGvnkFvfeadppdvskipkedvlgvtvi 95 
                     ms+v+++ vkvlnnpa+f+d ++feitfecle+L++dlewkl+yvgsa+s+e+dqeLds+lvGPi+ GvnkF+feadppd++kip++++lgvtvi
      KKY15037.1   1 MSVVSLLGVKVLNNPANFTDSYEFEITFECLEQLQKDLEWKLTYVGSATSSEHDQELDSLLVGPIPIGVNKFIFEADPPDLKKIPSSEILGVTVI 95 
                     9********************************************************************************************** PP

                     EEEEEETTEEEEEEEEEEEEEETT--CTTHHHS---GGGEEEEE-TTS-EEEE----TT CS
  ASF1_hist_chap  96 lltasYkeqeFvrvGYyvnneyedeelkenppekpkieklvRniladkprvtrfkikwd 154
                     llt++Y+++eFvrvGYyvnney++eel+++pp+kp ie+++Rnila+kprvtrf+ikwd
      KKY15037.1  96 LLTCAYDDREFVRVGYYVNNEYDSEELNNEPPAKPVIERVRRNILAEKPRVTRFAIKWD 154
                     **********************************************************8 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  23.1   2.1e-05      0.12     286     414 ..     141     271 ..     132     301 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 2.1e-05
       Nop14 286 lEeeRlkRMrgeedeeeeeekkkkkkkeasaDdldddfvleeeeeee.efglgkglkataeee.eeededdfeedddlveseseeeeeeeeedeeeeed 382
                 +E+ R+ R   + d+e+ +  +   ++ ++aD lddd      ee+e +  l+++l++t+++  e+e+++  ++  d++  + e  ++  +e+ee+ +d
  KKY15037.1 141 AEKPRVTRFAIKWDSEDSAPAEYPPDQ-PEADTLDDDGTGYGAEEAEmQAALERELAETEKRVaEDEQKKTATNGGDAEMGGTERAPKAAKEEEEDGSD 238
                 79999***9999777777777777777.9******9988776665551455666665445444455555555555555555555555333333333333 PP

       Nop14 383 eeeee.eeeededdlsdlese..eeeeedeleeel 414
                  e+e+ e+e++ ++++++e+   e e ++++  e+
  KKY15037.1 239 AESEDlEAESSGSEDEEDEEGegEGEGDEDV--EM 271
                 3333323333322222222111222222221..22 PP

>> FliW  FliW protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.2e-05      0.31      41      97 ..      11      67 ..       9      73 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.2e-05
                EEE-GGGT-TT------HHHHHHTT--SGGGEEEEEEEE-.-SSGG-EE-SSS-EEE CS
        FliW 41 vvidPflffpdYelelsdeelelleleseedvlvlvivtvpeddekmtvNlkAPivi 97
                v+ +P++f + Ye+e++ e le+l+ + e ++ ++   t +e+d++    l +Pi i
  KKY15037.1 11 VLNNPANFTDSYEFEITFECLEQLQKDLEWKLTYVGSATSSEHDQELDSLLVGPIPI 67
                5779*********************99999999999999999999999999999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1008  (0.0562218); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.48
# Mc/sec: 1917.62
//
Query:       KKY15038.1  [L=1016]
Description: putative cfia complex component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-86  290.2   0.0    2.7e-86  290.2   0.0    4.0  6  Suf       Suppressor of forked protein (Suf)
  ------ inclusion threshold ------
      0.059   14.2   3.1         18    6.5   0.0    4.5  5  TPR_14    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Suf  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   4.1       1.1   9.9e+03     192     263 ..      46     118 ..      11     239 .. 0.71
   2 ?   -1.6   0.1      0.24   2.2e+03      84     116 ..     268     330 ..     263     338 .. 0.49
   3 ?   -3.4   0.0      0.82   7.4e+03      96     116 ..     356     376 ..     348     379 .. 0.73
   4 ?   -1.6   0.0      0.23   2.1e+03      86     121 ..     395     428 ..     390     461 .. 0.78
   5 ?   -2.9   0.7      0.58   5.2e+03     189     219 ..     598     644 ..     565     673 .. 0.45
   6 !  290.2   0.0     3e-90   2.7e-86       2     296 .]     680     971 ..     679     971 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.1
         Suf 192 pqaqeskkrklesedssvkkPdklqmvespk..kgaagrrleqqrksessksaeaasksqkalqqqpaplprsi 263
                 + ++e+++++ +  +++ ++P+++   +s+    +    r++++ +++++ ++  as+   +++++++p+p++i
  KKY15038.1  46 AIMPEDYSVSFDVAKEN-APPSTTTTLASESvlVPPPDTRNSAPLSQDTEVPSRTASRLSAQVPSSSTPIPSQI 118
                 34444444444444444.55666555555443322222333444455555555556666666666666666665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.24
         Suf  84 nddnnaRvlfekvvsklskeke..............................akelykkfley 116
                 n++n+aR+++++  + + +  e                                 l++ +l+y
  KKY15038.1 268 NKQNEARAVYDRFFKLFPSAGEqwtsrahwesannnlfyveqvfqnslltvpYVGLWSAYLQY 330
                 556666666666555555444334444444444444444333444444433345566666666 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 0.82
         Suf  96 vvsklskekeakelykkfley 116
                 +++ +  +k++ ++++ ++++
  KKY15038.1 356 ALKMVGMDKDSGSIWQEYIDF 376
                 555666677788899999888 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.23
         Suf  86 dnnaRvlfekvvsklskekeakelykkfleyestfg 121
                  +++R+ ++k++  +++    ++l+k +  +e    
  KKY15038.1 395 MDSLRAAYQKAICVPTSAL--NSLWKEYEGFEMSLS 428
                 5778999999998887776..999999999997654 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 0.58
         Suf 189 s...............kvpqaqeskkrklesedss.vkkPdklqmve 219
                 +               k++q   s ++++ + d++ v++P++    +
  KKY15038.1 598 NkvldalydlvtklrsKEAQEIASIQANMGEVDTQqVNEPKAYDDED 644
                 03344444444444444444444455555554444466666555543 PP

  == domain 6  score: 290.2 bits;  conditional E-value: 3e-90
         Suf   2 lvwikymrasrRaeGikgaRkvFkkARkkprltyevyvasAllEyyiskdkkvAtkIFelGlKkFpedeefvlkYldyLislnddnnaRvlfekvvskl 100
                  +wi++mra+rR++   g R++F++ARk++r+t+e yv+ Al+Ey+++kd++ +t+IFe+G+K+Fpede f+l+Yl++Li +nd++naR++fe++v kl
  KKY15038.1 680 HAWIALMRAARRIQSKAGFRAIFADARKRGRVTSELYVETALIEYHCYKDPA-GTRIFERGMKLFPEDEIFALEYLKHLIAINDVTNARAVFETTVGKL 777
                 69**************************************************.********************************************** PP

         Suf 101 skeke....akelykkfleyestfgdlssilklekRmeelfpedskleqfvdRYklknldpikkrelksetkqeeekallqkkee.qaaslees....k 190
                 +++ +    ak+++++ +eyes+fg+ls++ klekRm+el+p ds l+ f++RY l  +dp+++r++ s  + + ++++ q+++e  +a+++++    +
  KKY15038.1 778 TSNAAtvarAKPIFRFLHEYESHFGELSQVAKLEKRMNELYPGDSMLKTFSQRYTLRGFDPTEARPVASSGQGQAPQTV-QPSIEeATATMPSPvprlT 875
                 ***99999**************************************************************999999966.5555526666666699999 PP

         Suf 191 vpqaqeskkrklesedss.vkkPdklqmvespkkgaagrrleqqrksessksaeaasksqkalqqqpaplprsivallsvLPsaqsfdgpvfnpeklve 288
                 +p +++s+kr+ +++ ++ +++P+kl+++esp kgaagrrl+qq++++ ++ a +a            plp +i++lls++P+ +++++ +fnp ++++
  KKY15038.1 876 EPAITNSPKRPFPDDFDDkINQPRKLARGESPLKGAAGRRLDQQKRAHNANAALPA-----------VPLPGQIAFLLSIIPNVKYYTEFRFNPADVIQ 963
                 99***********998889*********************9999998666655554...........59****************************** PP

         Suf 289 llretelP 296
                 llr+t+lP
  KKY15038.1 964 LLRDTRLP 971
                 ******99 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.047   4.2e+02      21      43 ..     239     262 ..     233     263 .. 0.86
   2 ?    4.1   0.1     0.012     1e+02       2      34 ..     255     287 ..     254     295 .. 0.89
   3 ?    6.5   0.0     0.002        18       1      34 [.     528     561 ..     528     568 .. 0.94
   4 ?   -2.1   0.3       1.1     1e+04      14      43 ..     657     687 ..     653     691 .. 0.55
   5 ?   -2.0   0.0         1   9.4e+03      22      41 ..     734     753 ..     731     760 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.047
      TPR_14  21 iallrralalaP.ddaeawlllaq 43 
                 + +l+++++ +P +d++awl l +
  KKY15038.1 239 VGILEDRIKEDPrGDLDAWLNLIR 262
                 678*********779*****9976 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.012
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPdd 34 
                 +a+l l + ++ + +  eA+a+++r  +l+P+ 
  KKY15038.1 255 DAWLNLIREHRDRNKQNEARAVYDRFFKLFPSA 287
                 69999*************************976 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.002
      TPR_14   1 peallalaeallalGdpdeAiallrralalaPdd 34 
                 pe + ++ae + ++G  ++ ++ l++  +++P++
  KKY15038.1 528 PEIWFDAAEWCIQNGMEQDGEKFLEQGAEANPES 561
                 789****************************985 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 1.1
      TPR_14  14 lGdpdeAiallrralal.aPddaeawlllaq 43 
                 +++ +++ + + + l++   +   aw++l++
  KKY15038.1 657 QDRIETSKKSYAAQLEAlSKTLSHAWIALMR 687
                 4555666666666655313444456655554 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 1
      TPR_14  22 allrralalaPddaeawlll 41 
                 ++++r  +l+P+d+ + l++
  KKY15038.1 734 RIFERGMKLFPEDEIFALEY 753
                 68999999***998777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1016 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       819  (0.0456802); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.52
# Mc/sec: 5914.60
//
Query:       KKY15039.1  [L=1003]
Description: putative eukaryotic translation initiation factor 2c [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-74  250.1   0.0    4.5e-74  249.4   0.0    1.3  1  Piwi       Piwi domain
    6.8e-19   67.3   0.1    1.7e-18   66.0   0.1    1.8  1  ArgoL1     Argonaute linker 1 domain
    3.1e-16   59.4   0.5    7.2e-16   58.2   0.5    1.6  1  PAZ        PAZ domain
    3.8e-13   49.5   0.0    2.2e-12   47.1   0.0    2.3  2  ArgoL2     Argonaute linker 2 domain
    1.5e-12   48.3   0.0    6.3e-12   46.3   0.0    2.2  1  ArgoN      N-terminal domain of argonaute
      1e-07   32.1   0.0    5.9e-07   29.7   0.0    2.3  2  ArgoMid    Mid domain of argonaute
     0.0068   15.9   0.0      0.015   14.7   0.0    1.5  1  SBP_bac_6  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> Piwi  Piwi domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.4   0.0   1.7e-77   4.5e-74       2     299 ..     643     945 ..     642     947 .. 0.93

  Alignments for each domain:
  == domain 1  score: 249.4 bits;  conditional E-value: 1.7e-77
                 EEEEECSSGHHCHHHHHHHHHHTCCCCEEEEEHHHHCTCCHHHHHHHHHHHHHHHHTT-BS-EEESSSTTSSE......EEEEEEEEEECCCSCCCEEE CS
        Piwi   2 ilvilpekkkdkyheikkyletdlgiisqcillktilkrqlkkqtltnvllkinvKlGgknvliveikleldv..sptliiGidishgtagtvdnpsva 98 
                 +++++++k +  yh ik+ ++  +g++sq++++++++k   ++q+l+nvl+k+n+KlGg+  +  +  + +d    +t++iG+d+sh++ g  ++ps a
  KKY15039.1 643 LVFVVQNKDSWHYHRIKRATDCYHGVVSQVVQSQQASKG--NPQYLSNVLMKFNAKLGGSTCKAHAQHKGYDGlrAGTMFIGCDVSHPSPGS-EQPSTA 738
                 7999999********************************..79*****************7777766666666899****************.****** PP

                 EEEEEEETSSEEEEEEEEESSCCCCHHHH..HHHHHHHHHHHHHHT.TTT-TTSEEEEEESS....S..S-HHHHHHHHHHHHHHH..HHCTTTEEEEE CS
        Piwi  99 avvasldkensrylaevstqassqellek..lkeiikellrefkks.skkkkperiivyRdGvseGqfkqvlnsEvkelkealkkl..keqyqpkltvi 192
                 a+++s+d   +ry+a v+ + ++ e++++  +k+++k l+  +  +    + p+++ + RdGvseGq++qvl++Ev+ + + ++++  ++ ++ ++tvi
  KKY15039.1 739 ALTMSIDRPATRYAAAVQSNGHRVEMVTEanFKSMLKPLVTYWISNvAAGRSPTQVFYMRDGVSEGQYQQVLQQEVPRINAVMREVcgGKPWEGQITVI 837
                 **************************99877999999988888544155679********************************8844566779***** PP

                 EEECSCS--EEESESTC.CCEETTTCEEETTEEEEEEEECCEEECCCCEEEEEEEEEEEEEEES..S-CCHHHHHHHHHCTGGTTTTSS-SS-HHHHHH CS
        Piwi 193 vvqkrhhtrfFasdkae.ksqnippGtvvdkkitlpeekdfylcshaglqgtvkPtkytvlvdeaklsadelqsltyklchmyqrstrsvsiPapvyyA 290
                 +++krhh r F+   +  +  n++pGt+v+   t p   dfyl sh+ lqgt++P+kytvl d+ak s+++lq+l+y+ c+ y rst+svs+ + vyyA
  KKY15039.1 838 IASKRHHVRAFPDGRSGdRFGNPLPGTLVERDCTTPHDWDFYLYSHTALQGTSRPVKYTVLRDDAKHSPNHLQNLIYDQCYQYIRSTTSVSLHPAVYYA 936
                 ************887776778****************************************************************************** PP

                 HHHHHHHHT CS
        Piwi 291 hklAkrvrn 299
                 h+++kr++ 
  KKY15039.1 937 HLASKRAKA 945
                 *****9875 PP

>> ArgoL1  Argonaute linker 1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.1   6.7e-22   1.7e-18       2      52 .]     293     342 ..     292     342 .. 0.90

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 6.7e-22
      ArgoL1   2 vgrsFfsppskqrvdLggggleawrGfyqSvRptqgg.LllNvDvsntaFyk 52 
                  ++sFfs++  q ++L ggg+e+wrG++qS+Rp++ g +++N+Dv+nt+F++
  KKY15039.1 293 LKNSFFSRS-IQAQEL-GGGVEVWRGIFQSLRPVHPGsMSVNLDVANTCFWR 342
                 589******.88999*.66***************6555*************6 PP

>> PAZ  PAZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.5   2.8e-19   7.2e-16      23     137 .]     380     489 ..     364     489 .. 0.91

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 2.8e-19
                 HCCCCTTBEEEETTTTS-.....CEEEEEEEESS--TTSEECCTTCT.....CECCHHHHCCT---ST-TT--EEEEEES-SS----EEEEE-CCCCEE CS
         PAZ  23 aaealkgliVmtwynnrn.....ktyyvadittdlapsstFpdkdke...neitfaeYfkkkYnieikdqdqplldvdkktesehssqkqiLvpElcdi 113
                   ++lk+l+V+++y+n       +++ ++++ +++a++++++  dk+    ++++++Yf++kYn++++++++pl ++ k        + +++++E+ ++
  KKY15039.1 380 QLRQLKKLRVTVDYQNMPatvkgREFIIKGFINQNAKQYELDITDKDgrtVKTSVYDYFRRKYNVTLRHHNLPLCEMTK--------KGVMYPIEVIQV 470
                 5689**********883355678****************999998888899****************************........89********** PP

                 ESSBCCCCCTCCCHHHHCCCH... CS
         PAZ 114 hpisasqrykkkllpsilqrlnll 137
                    s++ +y++kl  + lq++n++
  KKY15039.1 471 ---SQGNKYNYKL--DELQTSNMI 489
                 ...**********..*******96 PP

>> ArgoL2  Argonaute linker 2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.5   3.9e+03      22      38 ..     385     403 ..     372     404 .. 0.71
   2 !   47.1   0.0   8.6e-16   2.2e-12       1      46 [.     498     543 ..     498     544 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.5
      ArgoL2  22 rafGisid..pqmttVpGR 38 
                 ++  +++d  + ++tV+GR
  KKY15039.1 385 KKLRVTVDyqNMPATVKGR 403
                 55556677424599****9 PP

  == domain 2  score: 47.1 bits;  conditional E-value: 8.6e-16
      ArgoL2   1 eRkksIlegvkvlgydddpylrafGisidpqmttVpGRvLppPtlk 46 
                 eR ++I+eg ++l++++d  +++fG++i+p+m+++++RvLp P++ 
  KKY15039.1 498 ERIQAIEEGKNLLSWGNDRWMKHFGMEINPNMVKTKARVLPNPQIE 543
                 899*****************************************96 PP

>> ArgoN  N-terminal domain of argonaute
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   2.5e-15   6.3e-12       4     133 ..     150     275 ..     147     280 .. 0.75

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 2.5e-15
       ArgoN   4 klraNyFkvtslpdktlyhYdveitkkakrvglrriielllee.ykkselagkkpayDgrknlysakkLp..kefe.dl..paaeesakkepsekrrrk 96 
                 ++  N+++v++ p++ + +Yd +i++ a   ++r iie++++   + ++l    +++Dg+k+ +++++ +   +f  dl  +   e+ +++p     ++
  KKY15039.1 150 TIGLNFYRVSKYPSREIWQYDLNIGNGA---EKRVIIEKVWKSrIRLQHLPD-PMLFDGNKLGWTTHQHKpeISFVvDLdvE---EGRRPNP-----NS 236
                 5668******9**********9775222...147799999955444556664.8***************9888888888532...3334333.....45 PP

       ArgoN  97 srtfkvtikfaksinlqsLleylrgkq..deasleaiqa 133
                 +++f+vt++ +k+inl+ ++++l+++   ++ +lea ++
  KKY15039.1 237 KNSFRVTCRRTKKINLAVIEAFLANRLsfSNDVLEAFNF 275
                 78*********99**********6554566666666555 PP

>> ArgoMid  Mid domain of argonaute
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.9   7.5e+03      28      54 ..     243     269 ..     241     270 .. 0.87
   2 !   29.7   0.0   2.3e-10   5.9e-07       4      65 ..     555     615 ..     553     630 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.9
     ArgoMid  28 cfasqrkvkenkledfikqlvkiskdv 54 
                 ++  ++k++ + +e f+ + ++ s+dv
  KKY15039.1 243 TCRRTKKINLAVIEAFLANRLSFSNDV 269
                 688999**********99999888875 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 2.3e-10
     ArgoMid   4 nGsWdmrgkqFlepk.akikkWAilcfasqrkvkenkledfikqlvkiskdvgisleekpeir 65 
                 +G+Wd+rgk+F+  + +++ +W i  f   r++++++ ++f++ l+k++k +g +++++p ++
  KKY15039.1 555 SGRWDLRGKRFFALPgNPLVSWGIGFFP--RTLNSAQRTNFAQALMKQYKGHGATVNNEPFMM 615
                 7***********9888**********98..**************************9998665 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.8e-06     0.015     113     187 ..     745     813 ..     724     822 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.8e-06
   SBP_bac_6 113 edgvkkllrnlkanlhpaqmvkaagslesgepavsvvpyffadilpekkkgknlkvvwPedGalvspifmlvkkg 187
                   +++++++++  n+h ++mv+ a+ ++  +   ++v+y+ +++++ ++   +++v +++dG +   ++ +++++
  KKY15039.1 745 DRPATRYAAAVQSNGHRVEMVTEANFKSMLK---PLVTYWISNVAAGRS---PTQVFYMRDGVSEGQYQQVLQQE 813
                 568999******************9999998...***************...**********9999888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1003 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 6333.16
//
Query:       KKY15040.1  [L=275]
Description: putative ubie coq5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-27   96.0   0.0    2.4e-27   95.6   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    4.9e-23   81.7   0.0      9e-23   80.8   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
      1e-22   80.6   0.0      2e-22   79.6   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    9.5e-16   58.1   0.0    1.2e-15   57.8   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    1.8e-15   57.5   0.0    2.7e-15   56.9   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
    1.6e-14   53.8   0.0    2.5e-14   53.2   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    2.4e-09   37.0   0.0    3.6e-09   36.5   0.0    1.3  1  MetW             Methionine biosynthesis protein MetW
    3.3e-07   29.7   0.0    4.9e-07   29.1   0.0    1.2  1  DREV             DREV methyltransferase
    3.2e-06   26.8   0.0    4.5e-06   26.3   0.0    1.2  1  MTS              Methyltransferase small domain
    1.4e-05   24.6   0.0    2.2e-05   24.0   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
    1.9e-05   23.8   0.0    3.2e-05   23.0   0.0    1.3  1  Methyltransf_9   Protein of unknown function (DUF1698)
    3.4e-05   22.6   0.0    6.3e-05   21.7   0.0    1.3  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
    0.00023   21.0   0.0    0.00033   20.5   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0012   18.2   0.0     0.0015   17.8   0.0    1.2  1  Methyltransf_2   O-methyltransferase domain
     0.0039   16.6   0.0     0.0054   16.2   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0042   16.5   0.0     0.0071   15.8   0.0    1.3  1  TehB             Tellurite resistance protein TehB
      0.005   16.7   0.0      0.029   14.2   0.0    1.9  1  Methyltransf_8   Hypothetical methyltransferase
     0.0081   15.8   0.0      0.014   15.0   0.0    1.3  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
  ------ inclusion threshold ------
      0.067   12.7   0.0       0.34   10.4   0.0    1.9  2  CheR             CheR methyltransferase, SAM binding domain
       0.07   12.7   0.0        0.1   12.2   0.0    1.2  1  NodS             Nodulation protein S (NodS)
       0.13   12.3   0.0       0.18   11.7   0.0    1.3  1  Methyltransf_32  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   0.0   2.8e-30   2.4e-27       4     113 ..      38     144 ..      35     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 2.8e-30
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileei 97 
                      + ++lDlGCG G++t  +a  l p+++v+G D  e+++ +Ar +a++ gl n++Fe+ d+++l+  + d+ fD++ ++++l+++ dp +il+e+
       KKY15040.1  38 AHTILDLGCGPGTITCDIA-SLVPQGRVIGTDAVEDVLVQARDIASSRGLHNIKFEAVDANSLP--YPDAHFDIVYCHQLLQHVQDPINILREM 128
                      6789***************.889*****************************************..**************************** PP

  Methyltransf_31  98 ervlkpggilliedpr 113
                       rv kp+g +++++++
       KKY15040.1 129 RRVTKPNGLVAVREAD 144
                      *************999 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0   1.1e-25     9e-23       1      97 []      41     136 ..      41     136 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 1.1e-25
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      +LdlGcG+G++t ++a  +++++v+g+D  e+ l +ar  a+++gl n++f+  da++lp++d++fD+v++ + l+h++  d  ++l+e++rv+
       KKY15040.1  41 ILDLGCGPGTITCDIASLVPQGRVIGTDAVEDVLVQARDIASSRGLhNIKFEAVDANSLPYPDAHFDIVYCHQLLQHVQ--DPINILREMRRVT 132
                      8******************99**************************************************766***98..5569********* PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      kp+G
       KKY15040.1 133 KPNG 136
                      **99 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   2.3e-25     2e-22       1      95 [.      42     139 ..      42     140 .. 0.97

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 2.3e-25
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl.kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      Ld+GcG G +++++a+ +  +rv+g+D  + +l +a++ as +gl +++f   da +lp++d+ fD+v++++ l+hv+dp  +l+e++Rv kp+
       KKY15040.1  42 LDLGCGPGTITCDIASLVpqGRVIGTDAVEDVLVQARDIASSRGLhNIKFEAVDANSLPYPDAHFDIVYCHQLLQHVQDPINILREMRRVTKPN 135
                      8**************888999************************************************************************* PP

                      EEEE CS
  Methyltransf_11  92 Gllv 95 
                      Gl++
       KKY15040.1 136 GLVA 139
                      *987 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   1.4e-18   1.2e-15       3     125 ..      18     159 ..      16     244 .. 0.79

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 1.4e-18
  Methyltransf_23   3 aqreeelsdklerllpklraggrvLdiGcGtG.illevlrengf.svtgvDlspeaveiae......kakkaqkdqfdeqeaaepqgkfdlIvl 88 
                      ++ ++ ++   ++llp  r+   +Ld+GcG G i++++++  +   v+g D+ +     a+      + ++ +++ +d+++ ++p+++fd++++
       KKY15040.1  18 SHARRTAQNSFAFLLPHIRPAHTILDLGCGPGtITCDIASLVPQgRVIGTDAVEDVLVQARdiassrGLHNIKFEAVDANSLPYPDAHFDIVYC 111
                      6777888889999***99**************99*****99876788888887654444447777889999999999999************** PP

  Methyltransf_23  89 revlehvpdppellrqiatllkpgGylllseplasl...........k 125
                       ++l hv+dp   lr +++ +kp+G++ ++e + ++           +
       KKY15040.1 112 HQLLQHVQDPINILREMRRVTKPNGLVAVREADYKSfawspdspgldA 159
                      ******************************987655555555554441 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   3.1e-18   2.7e-15       1      98 [.      42     137 ..      42     138 .. 0.95

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 3.1e-18
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++GcG G+++  ++   p+ +++g+D  ++++++a+   ++r+ +n ++  ++a++l   d   +fD+v+++++l+h++d+  +l+++r++ k
       KKY15040.1  42 LDLGCGPGTITCDIASLVPQGRVIGTDAVEDVLVQARDIASSRGLHNIKFEAVDANSLPYPDA--HFDIVYCHQLLQHVQDPINILREMRRVTK 133
                      8*******************************************9999999999999887765..***************************** PP

  Methyltransf_12  95 pgGr 98 
                      p+G 
       KKY15040.1 134 PNGL 137
                      ***7 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0     3e-17   2.5e-14      46     154 ..      36     143 ..      14     152 .. 0.92

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 3e-17
                      --TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHH CS
  Ubie_methyltran  46 krgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkea 139
                      ++++++lD+ +G g ++ ++++ v  +g+v++ D  e++L ++++ +  +g  ni+f   +a+ Lp+ d  fD+v     l+ v D  + L+e+
       KKY15040.1  36 RPAHTILDLGCGPGTITCDIASLV-PQGRVIGTDAVEDVLVQARDIASSRGLHNIKFEAVDANSLPYPDAHFDIVYCHQLLQHVQDPINILREM 128
                      66789***************9887.68******************************************************************* PP

                      HHHEEEEEEEEEEEE CS
  Ubie_methyltran 140 yrvlkpGGrlvvlef 154
                      +rv kp G + v e 
       KKY15040.1 129 RRVTKPNGLVAVREA 143
                      *********999775 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   4.3e-12   3.6e-09       4     103 ..      28     133 ..      25     151 .. 0.75

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 4.3e-12
        MetW   4 feliaelikpgsrvldlGcGdGell....ellkeekqvdgrGlelde.egvaecvakGlsviq.gdldkdlenfedksfdyvvlsqtlqatrnpkevld 96 
                 f+ ++  i+p  ++ldlGcG G++     +l+ + + + +  +e    ++   + ++Gl+ i+ + +d +   ++d  fd+v   q lq +++p ++l+
  KKY15040.1  28 FAFLLPHIRPAHTILDLGCGPGTITcdiaSLVPQGRVIGTDAVEDVLvQARDIASSRGLHNIKfEAVDANSLPYPDAHFDIVYCHQLLQHVQDPINILR 126
                 67778899**************9851111344444444444554332022223568***99883557999999************************** PP

        MetW  97 ellrigr 103
                 e+ r+++
  KKY15040.1 127 EMRRVTK 133
                 *****87 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   5.8e-10   4.9e-07      95     186 ..      38     140 ..      28     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 5.8e-10
        DREV  95 dkklldlGaGdGeitkrvaptfee.............vyatelsetmrdrlkkkkynvlsalelqetdvkldlilclnlldrcfdplklledirsalep 180
                  +++ldlG G G it  +a+ + +             v a ++++     l+  k++ + a+ l   d ++d++ c  ll    dp+++l+++r + +p
  KKY15040.1  38 AHTILDLGCGPGTITCDIASLVPQgrvigtdavedvlVQARDIAS--SRGLHNIKFEAVDANSLPYPDAHFDIVYCHQLLQHVQDPINILREMRRVTKP 134
                 689*******************99997777777774444444443..4579999********************************************* PP

        DREV 181 ngrviv 186
                 ng v v
  KKY15040.1 135 NGLVAV 140
                 **8866 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   5.3e-09   4.5e-06      21     102 ..      29     110 ..      15     137 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 5.3e-09
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTT.TSTTS-EEEEE CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvle.eveekkfdliv 102
                 ++Ll ++    ++++lDlGcG G +++ +a+  p+ +v  +d+    l  a+  +++ +l+ +++ a d+ +   ++++fd++ 
  KKY15040.1  29 AFLLPHIRP--AHTILDLGCGPGTITCDIASLVPQGRVIGTDAVEDVLVQARDIASSRGLHnIKFEAVDANSlPYPDAHFDIVY 110
                 678888888..667*****************************************99999999998888877234578899886 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   2.6e-08   2.2e-05       3      64 ..      39      99 ..      37     143 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 2.6e-08
                    EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHH CS
  Methyltransf_4  3 pvvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvl 64
                     ++l++GcG G+++ ++A   P+  ++G +  ++v+ ++ + +  ++l+N++    da + l
      KKY15040.1 39 HTILDLGCGPGTITCDIASLVPQGRVIGTDAVEDVLVQARDIASSRGLHNIKFEAVDA-NSL 99
                    5789*************************************************99999.444 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   3.7e-08   3.2e-05     106     215 ..      30     138 ..      15     144 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 3.7e-08
                     HHGGGS.--TT-EEEEET-TTSHHHHHHHHCT-S.EEEEE---HHHHHHHHHHHCCTTTTSSEEEE---GGGS-T.---EEEEEEES-GGG-S-H CS
  Methyltransf_9 106 rvlphlsdlkgrtildvGcgnGyhlwrmvgegak.lvvGidPselfliqfeavrkllgedqrahllplgieqlpe.leafdtvfsmGvlyhrrsP 198
                      +lph+ +   +tild+Gcg G     +++  ++  v+G d  e  l+q + +    g ++ +++  +  + lp   + fd+v+   +l h + P
      KKY15040.1  30 FLLPHIRP--AHTILDLGCGPGTITCDIASLVPQgRVIGTDAVEDVLVQARDIASSRGLHNIKFEA-VDANSLPYpDAHFDIVYCHQLLQHVQDP 121
                     57899987..579***********9999998776479*********************99999987.999****96677**************** PP

                     HHHHHHHHCTEEEEEEE CS
  Methyltransf_9 199 ldhllqlkdqlvkgGel 215
                     ++ l++++   + +G +
      KKY15040.1 122 INILREMRRVTKPNGLV 138
                     *******9998888855 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   7.3e-08   6.3e-05     119     216 ..      39     139 ..      28     147 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 7.3e-08
  Methyltransf_29 119 rtvlDvGCgvasfg...ayllsrdvltlslapkDeheaqvqfaLeRgvpai.lavlgtkrlpyPsrsfdlihCsrCridwteedgilllevdRv 208
                      +t+lD+GCg    +   a l+ ++ +    a +D+  +   +a  Rg+  i   ++ ++ lpyP + fd++ C + ++++ ++   +l e+ Rv
       KKY15040.1  39 HTILDLGCGPGTITcdiASLVPQGRVIGTDAVEDVLVQARDIASSRGLHNIkFEAVDANSLPYPDAHFDIVYCHQ-LLQHVQDPINILREMRRV 131
                      689*****987765223677888777777899999999999*******987468999****************98.567788888999****** PP

  Methyltransf_29 209 lRpgGyfv 216
                       +p+G  +
       KKY15040.1 132 TKPNGLVA 139
                      *****765 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.9e-07   0.00033      70     147 ..      33     110 ..       8     127 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.9e-07
                 T.--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEEEES-GGGTTGGG-SEEEEE CS
        PCMT  70 e.lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvgDGrkGyeekaPYdaih 147
                   +++   +L++G+G G  t  +a lv ++grv++ + ++++  +a+      +l+n+++   D +    + a +d ++
  KKY15040.1  33 PhIRPAHTILDLGCGPGTITCDIASLV-PQGRVIGTDAVEDVLVQARDIASSRGLHNIKFEAVDANSLPYPDAHFDIVY 110
                 3589999**************999999.6799*****************************999887666677777666 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.8e-06    0.0015      61     167 ..      36     143 ..      12     190 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.8e-06
                     GG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE.-HHHHHHHHHHS-----TTEEEEES-TTTS-----SEEEEESSGGGS-H..HHHHHHHHHH CS
  Methyltransf_2  61 eglkslvDvGGGtGalakaivsayPtikvivfD.lpeVveaAkehlsageeervefvgGdffkdslPeaDaillkrvlhDwsd..ekcvklLkrv 152
                     ++ ++++D+G G G +   i+s+ P+ +vi  D + +V  +A++  s+   ++++f + d    slP  Da +    +h   +  ++  ++L+++
      KKY15040.1  36 RPAHTILDLGCGPGTITCDIASLVPQGRVIGTDaVEDVLVQARDIASSRGLHNIKFEAVDAN--SLPYPDAHFDIVYCHQLLQhvQDPINILREM 128
                     56689***************************9567899*****99999999********88..777777766555555543211456799**** PP

                     HHH--TT-EEEEEE- CS
  Methyltransf_2 153 kkalpagGkvivvea 167
                     ++  +++G v v ea
      KKY15040.1 129 RRVTKPNGLVAVREA 143
                     ********9999876 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.3e-06    0.0054     147     256 ..      23     138 ..      18     141 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.3e-06
        PrmA 147 TTklclealeklvkegeevlDvGtGSGiLaiaaakL.gakkvvavDiDevAvkvakeNaelNkvea.klevalseellk.eekadvivaNILaevl... 239
                 T + +  +l  ++++ +++lD+G+G G ++   a L    +v+++D  e  +  a++ a+  ++++ k+e   +++l+  ++++d++ +  L + +   
  KKY15040.1  23 TAQNSFAFLLPHIRPAHTILDLGCGPGTITCDIASLvPQGRVIGTDAVEDVLVQARDIASSRGLHNiKFEAVDANSLPYpDAHFDIVYCHQLLQHVqdp 121
                 77778888888999*************99986555516779*****9888888888888888888888887666666645699******9888777344 PP

        PrmA 240 ielaedikklvkeggll 256
                 i+++ ++ ++ k++gl+
  KKY15040.1 122 INILREMRRVTKPNGLV 138
                 56777888888888876 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   8.3e-06    0.0071      30     129 ..      36     137 ..      27     146 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.3e-06
                 -S-E.EEEES-TTSHHHHHHHHT..T-EEEEEES-HHHHHHHHHHHHHTT-TTEEEEE--GGG---.-S-EEEEEEESSGGGS-GGGHHHHHHHHHHTE CS
        TehB  30 kpgk.vldlgcgqgrnslylsll..gydvtawdknensiafleeikekenlknistalydineakl.derydfilstvvlmfleaeripsiienmqect 124
                 +p++ +ldlgcg g  +  ++ l     v   d  e+ +   ++i++   l+ni+ + +d n++   d ++d++    +l  ++     +i+++m++ t
  KKY15040.1  36 RPAHtILDLGCGPGTITCDIASLvpQGRVIGTDAVEDVLVQARDIASSRGLHNIKFEAVDANSLPYpDAHFDIVYCHQLLQHVQDP--INILREMRRVT 132
                 5654269*******998877665123468999*******************************98746678888777776666543..4799******* PP

                 EEEEE CS
        TehB 125 kvggy 129
                 k+ g 
  KKY15040.1 133 KPNGL 137
                 *9985 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   3.4e-05     0.029      95     159 ..      74     143 ..      25     149 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.4e-05
                     .EEEEESS-S....STTEEES-TTS-S--TT-EEEEEEES---..SS-HHHHHHHHHHHEEEEEEEEEEEE CS
  Methyltransf_8  95 kvrsfdlvav....nervvacdlakvPledesvdvavfclslm..gtnladflkeanrvlkvGGllkvaev 159
                      v++ d+++     n + +a d + +P  d   d+ v+c  l+  +++  + l+e++rv k+ Gl+ v e 
      KKY15040.1  74 LVQARDIASSrglhNIKFEAVDANSLPYPDAHFDI-VYCHQLLqhVQDPINILREMRRVTKPNGLVAVREA 143
                     455556655322225577899*************9.68988873357888999************999875 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.6e-05     0.014       7      71 ..      36      99 ..      30     112 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.6e-05
                     -TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCC CS
  Methyltr_RsmB-F  7 qeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarki 71
                     ++  tilDl ++PG  T  ia l  ++g+v+ +da +  l +  +  +  g++n++   +Da+  
       KKY15040.1 36 RPAHTILDLGCGPGTITCDIASL-VPQGRVIGTDAVEDVLVQARDIASSRGLHNIKFEAVDANSL 99
                     56789******************.899*******9999998888888888888888888888766 PP

>> CheR  CheR methyltransferase, SAM binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.1   9.1e+02      34      81 ..      40      78 ..      32      87 .. 0.64
   2 ?   10.4   0.0    0.0004      0.34     118     173 ..      87     140 ..      81     145 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.1
                EEEEES-TTTHHHHHHHHHHHCHSTTTSSS-EEEEEEESSCHHHHHHH CS
        CheR 34 riwsagcssGeEpYslAmllketlpkaaklkvkilAtDidlkvlekAk 81
                +i+  gc+ G  +  +A l+ +          ++++tD  + vl +A+
  KKY15040.1 40 TILDLGCGPGTITCDIASLVPQ---------GRVIGTDAVEDVLVQAR 78
                5677777777777777777766.........23555555555555554 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0004
                 TTEEEEE--TTT-SGGG--EEEEEE-SSGGGC-CHHHHHHHHHHHCCEEEEEEEEE CS
        CheR 118 elvkFeklnllekksvlgklDvifcrnvliYfdeetqekvlerfaeklkpgglLll 173
                 +++kFe  ++++   +  ++D++ c  +l   + +   ++l+++++  kp+gl+ +
  KKY15040.1  87 HNIKFEAVDANSLPYPDAHFDIVYCHQLLQHVQDP--INILREMRRVTKPNGLVAV 140
                 689*********888899***********987655..79*************9876 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00012       0.1      44     127 ..      38     126 ..      20     142 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
        NodS  44 iadalevGcaaGalterlapyckrltvv..dvveeaiararerv..kesshiswivsdvqqfs.tdekfdlivvaevlyyiedvaelra 127
                 +  +l++Gc  G++t  +a +  +  v+  d ve+ + +ar     +   +i++   d + +   d++fd++ + ++l +++d  ++  
  KKY15040.1  38 AHTILDLGCGPGTITCDIASLVPQGRVIgtDAVEDVLVQARDIAssRGLHNIKFEAVDANSLPyPDAHFDIVYCHQLLQHVQDPINILR 126
                 5678***************99877666644889998888887541156679********99963799**************99877654 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00022      0.18      24      86 ..      36      93 ..      12     121 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00022
  Methyltransf_32 24 sgaltvvDvGaGkgYLsfvlalkeke.yklkvvgidakeelvekaekraeklgkkfnkrlsfae 86
                     ++a t++D+G+G g  +  +a+      + +v+g da e++  +a+++a+  g  + ++++f+ 
       KKY15040.1 36 RPAHTILDLGCGPGTITCDIAS---LvPQGRVIGTDAVEDVLVQARDIASSRG--L-HNIKFEA 93
                     56789****************9...4489********************9988..5.5566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 1697.09
//
Query:       KKY15041.1  [L=566]
Description: putative allantoinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-27   96.2   0.0      6e-27   94.9   0.0    1.7  1  Amidohydro_1  Amidohydrolase family
    1.3e-10   41.4   0.0    1.2e-05   25.0   0.0    2.6  3  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   0.0   6.7e-31     6e-27       1     344 []      81     503 ..      81     503 .. 0.81

  Alignments for each domain:
  == domain 1  score: 94.9 bits;  conditional E-value: 6.7e-31
                   EEEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH......HHHHHHHHHHT.SSSEEEEEEESSEGGSGC CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattst......giealleaaee.lplglrilggkvsldrgs 90 
                   i+lPGl+DaHvHl+             +p++t +e++ +g+++a  +G+ttv+dm+ ++++      g++  + aa   ++++++++gg  ++  g+
    KKY15041.1  81 IILPGLVDAHVHLN-------------EPGRTEWEGFYTGTQAAAFGGVTTVIDMPLNAIPptttvaGFKEKIAAAQGkCWVDVGFYGG-IIP--GN 161
                   79***********8.............*************************************888555555555556********99.333..88 PP

                   CCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEE.......TSSCHHHHHHHHHHTTTEEEETTTTSTC CS
  Amidohydro_1  91 aetskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHa.......letkgevedaeaafgetiehgthlevae 180
                   ++  k ++e+ ++g+       +  ++ ++ +  e pa+s e + +++ e +++ + +++Ha        +   +v+ ++   + +   + ++ ++e
    KKY15041.1 162 EKELKPLVEEGVRGF-------K--GFLIESGVDEFPAVSSEDIMKVMAELADEPTTLMFHAemippitDSVGDDVQVSLPPLQPHGPLNAYVTFLE 249
                   888999999999998.......2..33355555577888889999999999999********99999988888889999988888888889999999 PP

                   C...............HHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEE...............HHHHHHHH..............SEHHHHHHH CS
  Amidohydro_1 181 s...............lglldeiklilahgvhltpteaellkerlkeagva...............hcpfsnsi..............lrsgrealr 233
                   s               l++l + +l + h+vhl+++ a+ l ++++  g++                      +               +s+ +al+
    KKY15041.1 250 SrppsfetyaieeilsLAHLAP-NL-ALHIVHLSAMQAIPLLRKARAQGINitaetcphylslaaeE------VaegdtrhkccppirHQSNQDALW 338
                   9*******77766666444444.33.679*****99999999999******99**888775555550......255555555555555788888887 PP

                   HHH....HHTSCEEEEEECT...........................TSSCCGGHHHH.........HHHHHHHHHHCCTT.TTHCHCHHHHHHHHH CS
  Amidohydro_1 234 kal....deGvkvglgtDga...........................asgnslnllee.........lrlalklqrgllye.deegglslkealrma 289
                   + l    ++Gv+ ++++D+                            + g+ +  + +         + +  +++r l+++ ++++   + ++++++
    KKY15041.1 339 NELleydTDGVIKTVVSDHSpctpdlkllphgvpghfhsatkddeptNTGDFFAAWGGissvglglpILWTELSRRKLNASpEARD-KIIVDLVKWC 434
                   766333246888******889*************9999999999999777777777777788888876666777788888866666.556699**** PP

                   THHHHHHTT-TTTSSSS-TTSB--EEEECC.CT.............CGGGTTTCTSEEEEEEEETTEEE CS
  Amidohydro_1 290 TingAkalglddkvGsievGkdADlvvvdl.di.............laafvglkkdgnvkkvivkGklv 344
                   + n+A ++gl++++G + vG+dAD+ ++d  +               ++++g +  g vk ++v+G+ v
    KKY15041.1 435 CVNTALQVGLEKQKGDLSVGYDADICIFDDeTTwkvgestmlfrnkCSPYQGREMCGIVKETWVRGQKV 503
                   *****************************97224557778899998999999999999*****999865 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   4.1e-06     0.037      10      63 ..      82     135 ..      80     144 .. 0.80
   2 ?   -2.7   0.0      0.33     3e+03     154     200 ..     161     207 ..     154     219 .. 0.85
   3 !   25.0   0.0   1.4e-09   1.2e-05     415     473 .]     432     504 ..     414     504 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.1e-06
  Amidohydro_3  10 vlPGFvDsHtHlaggg.vnl.rllrlpdarvtslegvltavrdqagttpkgrwivg 63 
                    lPG+vD+H Hl + g  ++  ++   +  + ++ gv+t+++   +  p++++++g
    KKY15041.1  82 ILPGLVDAHVHLNEPGrTEWeGFYTGTQ--AAAFGGVTTVIDMPLNAIPPTTTVAG 135
                   68**************888955555555..99999999999877777777777765 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.33
  Amidohydro_3 154 areaeaaavaaalaalasyGitsveagggnvsslddleplfeltaee 200
                   ++++++  v+ +++ ++++ i s ++  + vss+d +++++el++e 
    KKY15041.1 161 NEKELKPLVEEGVRGFKGFLIESGVDEFPAVSSEDIMKVMAELADEP 207
                   56788899999999999999999999999999999999999999985 PP

  == domain 3  score: 25.0 bits;  conditional E-value: 1.4e-09
  Amidohydro_3 415 alyTrgpAkalgledrkGtLevGadADlvvld.adpldvdppelaear.............vrltvvdGrvvy 473
                   + +  ++A ++gle+ kG L vG+dAD++++d     +v ++++   +             v++t+v+G+ v+
    KKY15041.1 432 KWCCVNTALQVGLEKQKGDLSVGYDADICIFDdETTWKVGESTMLFRNkcspyqgremcgiVKETWVRGQKVF 504
                   5566799*************************55566888887766668999999**************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 3519.75
//
Query:       KKY15042.1  [L=1072]
Description: putative myb dna-binding domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-14   53.4   5.2    9.3e-07   28.9   1.0    2.9  3  Myb_DNA-binding  Myb-like DNA-binding domain
    6.8e-13   48.7   3.9    2.4e-06   27.7   0.0    2.7  2  Myb_DNA-bind_6   Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.012   15.8   0.0      0.023   14.9   0.0    1.4  1  DUF2774          Protein of unknown function (DUF2774)
      0.012   16.0   3.8      0.026   14.9   1.5    2.7  3  Myb_DNA-bind_4   Myb/SANT-like DNA-binding domain
      0.026   14.7   1.5       0.44   10.8   0.5    2.5  2  SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
      0.062   14.2   0.2       0.25   12.3   0.2    2.2  1  zf-C2H2_4        C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.4   7.3e+03       1      12 [.     329     340 ..     329     345 .. 0.89
   2 !   25.2   0.2   4.4e-09   1.3e-05       2      45 ..     415     457 ..     414     458 .. 0.96
   3 !   28.9   1.0   3.1e-10   9.3e-07       2      44 ..     467     524 ..     466     524 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.4
                      CSSSBHHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdelL 12 
                      +g+++ eE ++L
       KKY15042.1 329 KGAFSVEEINRL 340
                      799*****9998 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 4.4e-09
                      SSSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 gkWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrny 45 
                      ++Wt e de L   v++ G ++ +Ia +l gRt +++  r++n+
       KKY15042.1 415 KRWTDEQDEELFHMVRERGHKFVEIATEL-GRTQNDVSQRYYNH 457
                      68***************************.6***********97 PP

  == domain 3  score: 28.9 bits;  conditional E-value: 3.1e-10
                      SSSBHHHHHHHHHHHHHHTTC..............HHHHHHHHTS.S-HHHHHHHHHH CS
  Myb_DNA-binding   2 gkWteeEdelLleavkkhGnr..............WkkIaerlgg.Rtekqcrsrwrn 44 
                      g+WteeE + L +av++   r              W+ ++e +g+ R++ qc  rwr+
       KKY15042.1 467 GSWTEEELQSLCDAVAECKRRlrlsesphtddqikWEIVSEIMGNiRSRAQCSKRWRK 524
                      89***************7766667777788889***********88**********97 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   8.1e-10   2.4e-06       1      45 [.     417     460 ..     417     466 .. 0.93
   2 !   20.4   1.6   1.5e-07   0.00045       1      43 [.     469     528 ..     469     544 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 8.1e-10
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkLrp 45 
                     Wt+e de+L   v++ g ++ +Ia++l+ Rt++++ +r+ n+++ 
      KKY15042.1 417 WTDEQDEELFHMVRERGHKFVEIATELG-RTQNDVSQRYYNHVKN 460
                     ****************************.************8765 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 1.5e-07
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygn..............dWknIaeal.nrRtpkqcfdrwkn..kL 43 
                     WteeE + L + v ++ +              +W+ ++e++ n R+  qc  rw++  ++
      KKY15042.1 469 WTEEELQSLCDAVAECKRrlrlsesphtddqiKWEIVSEIMgNIRSRAQCSKRWRKdrSI 528
                     *********999999755566666777778999********66************94444 PP

>> DUF2774  Protein of unknown function (DUF2774)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   7.7e-06     0.023       7      32 ..     427     452 ..     422     461 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.7e-06
     DUF2774   7 hflhesgknFveIAkkldirakdvak 32 
                 h+ +e g++FveIA +l+ + +dv +
  KKY15042.1 427 HMVRERGHKFVEIATELGRTQNDVSQ 452
                 777*****************999976 PP

>> Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.9   5.5e+03       8      27 ..      35      54 ..      31      74 .. 0.74
   2 ?   -1.1   0.1      0.86   2.6e+03       3      36 ..     416     435 ..     414     463 .. 0.58
   3 ?   14.9   1.5   8.8e-06     0.026       3      62 ..     468     524 ..     466     554 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.9
                    HHHHHHHHHHH..HHHHHHH CS
  Myb_DNA-bind_4  8 etklLieawgerilelrfqe 27
                     t+ Li+a++++  ++ + +
      KKY15042.1 35 RTRRLIDAVESDGEDDDVPR 54
                    6999*****99877776544 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.86
                     SS-HHHHHHHHHHHHH..HHHHHHH..SS--HHH CS
  Myb_DNA-bind_4   3 kWteeetklLieawgerilelrfqergkkrnkkl 36 
                     +Wt+e+ + L  +++er              + +
      KKY15042.1 416 RWTDEQDEELFHMVRERG-------------H-K 435
                     677777777777776642.............2.2 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 8.8e-06
                     SS-HHHHHHHHHHHHH...HHHHHHH..SS--HHHHHHHHHHHHHHC----HHHHHHHHHH CS
  Myb_DNA-bind_4   3 kWteeetklLieawge.rilelrfqergkkrnkklWeevaeamaergykrspeqCkeKien 62 
                      Wteee + L +a+ e +  +lr++e  +   + +We v+e m +    rs  qC +++++
      KKY15042.1 468 SWTEEELQSLCDAVAEcK-RRLRLSESPHTDDQIKWEIVSEIMGN---IRSRAQCSKRWRK 524
                     6***************54.7788888556666669*******944...4667777777764 PP

>> SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   0.00015      0.44      13      74 ..     400     456 ..     393     462 .. 0.81
   2 ?    4.2   0.1     0.017        50      18      47 ..     452     487 ..     445     490 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
  SANT_DAMP1_like  13 peytdeeYeellke.edWtkeetdyLfdlckeydlrfvviaDryelekkkkrsledlkeryYs 74 
                       ++++ +++++ ++ ++Wt e+ + Lf++++e   +fv ia          r+ +d+ +ryY+
       KKY15042.1 400 RRFKERHFRNVTETsKRWTDEQDEELFHMVRERGHKFVEIATEL------GRTQNDVSQRYYN 456
                      57889999999988456*********************998654......5677888888886 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.017
  SANT_DAMP1_like  18 eeYeellke......edWtkeetdyLfdlckeydlr 47 
                      + Y +++k+       +Wt+ee + L d + e+  r
       KKY15042.1 452 QRYYNHVKNrgsqgsGSWTEEELQSLCDAVAECKRR 487
                      56777777766655456**********999988766 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   8.5e-05      0.25       2      23 ..     293     314 ..     292     315 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.5e-05
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkth 23 
                 kC++C++  ++  +LlrH ++h
  KKY15042.1 293 KCSVCDRQMRNTGTLLRHERAH 314
                 8*******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1072 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1335  (0.0744604); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.07u 0.39s 00:00:01.46 Elapsed: 00:00:00.52
# Mc/sec: 6158.12
//
Query:       KKY15043.1  [L=208]
Description: putative fad dependent sulfhydryl oxidase erv2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-25   88.5   0.9    4.3e-25   88.1   0.7    1.4  1  Evr1_Alr  Erv1 / Alr family
  ------ inclusion threshold ------
      0.043   14.1   0.1       0.07   13.4   0.1    1.4  1  APOBEC1   APOBEC1
       0.13   12.4   0.0       0.19   11.9   0.0    1.3  1  SNAD4     Secreted Novel AID/APOBEC-like Deaminase 4


Domain annotation for each model (and alignments):
>> Evr1_Alr  Erv1 / Alr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.7   7.2e-29   4.3e-25       1      92 [.      79     165 ..      79     172 .. 0.95

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 7.2e-29
                 HHHHHHHHHHHHCSHSS..HHHHHHH-CHHHHHHHHHHHSSCHHHHHHHHHHHHHCH.CCCGSSHHHHHHHHHHHHHHHHHHTT...T-HHC CS
    Evr1_Alr   1 cslWtllHtlaaevpekpteeqqkelavlkaflkliakfypCeeCaehfekvlaenppekevesrdelvlWlweaHNeVnkrlakeefdcse 92 
                 ++ W+llHt++a++pe+pte+++++l   k+++ l+a++ypC eCa hf+++l+++pp+  ++sr+++v W + +HNeVnkr +k+ fdc++
  KKY15043.1  79 RAAWKLLHTTMARFPENPTEDEKEAL---KSYIWLFARLYPCGECAAHFQEILKKYPPQ--TSSRNTAVGWACFVHNEVNKRKNKPLFDCNN 165
                 789*****************999888...**********************99999988..9****************************95 PP

>> APOBEC1  APOBEC1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.2e-05      0.07      35      70 ..     102     137 ..      83     166 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.2e-05
     APOBEC1  35 psvscsitwflstspcgkcskaileflsqhpnvtlv 70 
                 ++++  i  f    pcg+c+ + +e l+++p  t  
  KKY15043.1 102 EALKSYIWLFARLYPCGECAAHFQEILKKYPPQTSS 137
                 44455554477899****************987755 PP

>> SNAD4  Secreted Novel AID/APOBEC-like Deaminase 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.2e-05      0.19      37      68 ..     101     132 ..      67     142 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.2e-05
       SNAD4  37 dpsqeyrvtwylswsPCaeCaekiaeflaehp 68 
                 +++ +  + ++    PC eCa++ +e+l++ p
  KKY15043.1 101 KEALKSYIWLFARLYPCGECAAHFQEILKKYP 132
                 4455577999******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1465.93
//
Query:       KKY15044.1  [L=391]
Description: putative branched-chain amino acid aminotransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-19   69.6   0.0    4.8e-19   69.1   0.0    1.2  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   2.7e-23   4.8e-19      12     223 .]      87     317 ..      66     317 .. 0.86

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 2.7e-23
  Aminotran_4  12 eiffldeHleRLrksaellglelpfdeeelrkileelleannsen........grlrllvsrgggglg.aatsepsvavyvsalppgpesekelplvt 100
                   if+ d++++R++ sa ++   + ++e+ + + ++ ++  n +++         ++r+l+++  ++lg ++  +++++v+v +    +  ++   + +
   KKY15044.1  87 TIFRPDQNAKRMAYSASYI-SCPAVPEDLFIECCKLAVGLNAEYVpsyesgaaMYVRPLIFASCAQLGlNPADKYTFVVFVMPTGVYHGIHAV-DALI 182
                  3599***************.6677777777788888888888888*****99888*************7777777777777777666666665.7777 PP

  Aminotran_4 101 ssdvrrdapsplpgaKtln.yldnvlarreakergadevllvdedgn..vtEgstsNvfivk.........ggelitPplssgiLpGitrrallelak 186
                    d  r+ap  +  aK    y++ ++  ++a  +g+  +l +d++ +  + E+sts ++ vk         + ++++P+ ++ +++++t +++ ++a+
   KKY15044.1 183 LEDFDRSAPEGTGSAKLGGnYAPVLRHSQRAYSEGYGITLHLDSKTRseIDEFSTSGFLGVKytnkkdptsHTTIVVPSSKN-VIKSVTSDSVQQIAR 279
                  77788888888888887666*************************9999*********99999*******999999997666.*************** PP

  Aminotran_4 187 al.gleveereitlkdleeadeafltntlrgvlpvrsi 223
                  +l  ++ve r+i +++l e+de++  +t++ ++pvrsi
   KKY15044.1 280 SLfSWTVENRRIPYEELSEFDEIIAAGTAASLVPVRSI 317
                  ************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2763.66
//
Query:       KKY15045.1  [L=365]
Description: putative c6 zinc finger domain containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-47  161.3   0.0    3.8e-47  160.9   0.0    1.1  1  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.9   0.0   2.1e-51   3.8e-47      91     366 ..       9     329 ..       1     361 [. 0.82

  Alignments for each domain:
  == domain 1  score: 160.9 bits;  conditional E-value: 2.1e-51
  Fungal_trans_2  91 ykdiLaaiLllcsieissgdvsd....wrvhLeaatsliksrggskasssslsskarfllrifayldilssttlg..rgpsfpseeyekllenkk 179
                     +++ La+ ++l s ei+s +       w++hL+ a+ +i+ r    +s s+++s a fl r+fayld+l+s++ +  + p+f+ +++++  ++++
      KKY15045.1   9 SNANLATAIMLSSLEIISPSTFGisipWQQHLNVARQIIHARYSAPQSISRKDSVAYFLSRWFAYLDVLGSLSGRtnDLPLFSGDYWAHDGTEEN 103
                     478899*********777773335678******************9***************************9966779*************** PP

  Fungal_trans_2 180 eesdsgldplmGcsnslilliseisrLarekrsarkd........seleplsileeaseleqrll.swkprssdlepdldeterassls...... 259
                      ++d+ +d l+G+ +++i+l+++i++Lar+++++r +          +   + l +a++l  +++   k   +++ +++++ e++s+ +      
      KKY15045.1 104 ADEDFVIDCLLGMTPRCIYLMAQIASLARQCDNERISsttnladpHWRPSPTVLVRAQSLLDEVNeARKHLTRPCPHRHPSVEPPSASTspsask 198
                     ****************************************9999944444455566666666666555555555555555555555555666666 PP

  Fungal_trans_2 260 ......................kdl..telfrlaaliylyrlvlglppsspevqelvkkllellellpsspvaiasLlWplFiaGceavdeddRd 330
                                           + l    +f+laa i++yr++l lp+s+p vq+lv+++ e l ++++++ a+a+Ll+p+F+aGcea  ++ R+
      KKY15045.1 199 gssstpdvpacsttpsdgwgtvQLLasNDSFHLAASIHIYRRILFLPRSHPTVQSLVNSVVENLLKIRKGGAAEACLLFPMFTAGCEALKPEVRE 293
                     77889999***********9974447799****************************************************************** PP

  Fungal_trans_2 331 fvrrrleeleqsrlgnvrrarqvleevWrrrddgee 366
                     ++++rl+ +e+ ++  v++ar+++e +W++++   +
      KKY15045.1 294 LILERLKGMEEVGMMQVTGARRLMERLWEENEAATQ 329
                     **********88889****************96333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2272.54
//
Query:       KKY15046.1  [L=974]
Description: putative c2h2 finger domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-53  179.4   0.0    8.2e-53  178.6   0.0    1.3  1  Pam17       Mitochondrial import protein Pam17
    1.3e-07   31.4   8.5    1.3e-07   31.4   8.5    3.3  3  zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
        9.2    6.2  20.8      0.076   12.9  10.8    2.5  2  zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> Pam17  Mitochondrial import protein Pam17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.6   0.0   1.4e-56   8.2e-53       8     164 ..     802     960 ..     787     961 .. 0.94

  Alignments for each domain:
  == domain 1  score: 178.6 bits;  conditional E-value: 1.4e-56
       Pam17   8 ssaaakeeekkltwneffklrkkrrrielvasivtallglllgaavlstleidp.tqqilgl.DplvvlglatlasgalGwllGpvlgsavfkllnrkk 104
                 s+++  ++e++l+w++ff+lr++rrr++l+asi+++l++   ++  ++t+++ + ++ i ++ Dp+v lgl t+a++++Gwl+Gp++g+av+++ +r++
  KKY15046.1 802 STSTPPPAEQNLDWQTFFRLRTSRRRYSLIASIASSLATSWGAIVAINTTPLSDtLTSISPIpDPFVSLGLFTFATAGVGWLIGPFFGQAVWRMSHRQQ 900
                 455677999*******************************99999999977655499999988************************************ PP

       Pam17 105 lkqleekekeFlerikknRvdpssqsvsnpvpDYYGekigslkdYrqWLrdqrafnrkak 164
                 +  + ++ek+F+er+k++Rvdp+  s++npvpDYYGek+gs  ++r WL+dqrafnrk++
  KKY15046.1 901 VPGFMVREKDFYERVKRYRVDPRGASAQNPVPDYYGEKVGSRDEWRTWLKDQRAFNRKRE 960
                 **********************************************************85 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   8.5   2.1e-11   1.3e-07       3      46 ..      48      92 ..      46      96 .. 0.94
   2 ?   -0.9   0.1      0.25   1.5e+03       3      13 ..     168     178 ..     166     182 .. 0.78
   3 ?   -3.2   6.4       1.3   7.8e+03      19      45 ..     233     246 ..     213     251 .. 0.59

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 2.1e-11
                SB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH..TT-B-TTT--B CS
  zf-C3HC4_3  3 eeCviClerprnvvllpCgHlvlCeeCaekllk..rkkkCpiCrrp 46
                ++C iC ++   + + pC+H+ +C+ Ca +l++  +++ C  Cr++
  KKY15046.1 48 DTCFICASNIDHISIAPCNHQ-TCHICALRLRAlyKTRACAHCRTE 92
                78*******************.*********99***********97 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.25
                 SB-TTTSSSBS CS
  zf-C3HC4_3   3 eeCviClerpr 13 
                 ++C +C ++++
  KKY15046.1 168 TMCDLCTRNKK 178
                 78999999876 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.3
                 TEEEEEE-HHHHHHHHHTT-B-TTT-- CS
  zf-C3HC4_3  19 pCgHlvlCeeCaekllkrkkkCpiCrr 45 
                 +C             ++++++C+iC r
  KKY15046.1 233 HC-------------REKHERCHICDR 246
                 33.............334466666654 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9  10.8   1.3e-05     0.076       2      40 .]      50      89 ..      49      89 .. 0.88
   2 ?   -2.2   2.3      0.64   3.8e+03       2      28 ..     217     246 ..     216     252 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.3e-05
  zf-C3HC4_2  2 CpiCldmlkdpsvvtpCgHvfCqkCilr..sLeekneCPlC 40
                C iC   +   + ++pC+H++C  C lr  +L +   C  C
  KKY15046.1 50 CFICASNIDH-ISIAPCNHQTCHICALRlrALYKTRACAHC 89
                *********8.79*************986688888888777 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.64
  zf-C3HC4_2   2 CpiCldmlk.dpsvvtpC..gHvfCqkCil 28 
                 C  C ++++ d      C  +H  C  C +
  KKY15046.1 217 CGFCRERFYgDDELYVHCreKHERCHICDR 246
                 555666555222233355446888888855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (974 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.49
# Mc/sec: 6006.78
//
Query:       KKY15047.1  [L=1042]
Description: putative snrnp assembly factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-23   81.8   0.0    9.4e-23   81.0   0.0    1.4  1  UCH        Ubiquitin carboxyl-terminal hydrolase
      3e-15   56.1   2.9    4.9e-15   55.4   0.2    2.8  2  G-patch_2  G-patch domain
    6.5e-09   36.0   0.1    1.1e-08   35.3   0.1    1.3  1  zf-UBP     Zn-finger in ubiquitin-hydrolases and other protei
  ------ inclusion threshold ------
      0.015   14.9   0.0      0.027   14.1   0.0    1.4  1  UCH_1      Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.0   2.1e-26   9.4e-23       2     209 ..     221     491 ..     220     569 .. 0.84

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 2.1e-26
                 EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TT.HHHHHHHHHHHHHH..SH-CCEE--HHHHHHHH.HHSGGGTSSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
         UCH   2 GlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkg.elakalkdlfkell..kskskavsPkklkktls.klaksfsgyk 96 
                 G++N+ ++ y+n v+Q+L+++ ++r+++        ++              ++ +l+ ++ +l+++l+  +  + +vsP++l++ ++ +++k+f   +
  KKY15047.1 221 GMNNIKANDYLNVVVQALAHVSPIRNFFML------HPFPP-----------NTpQLVIRFGTLVRKLWnaRAFRDHVSPHELLQEIAvRSSKRFTLTN 302
                 99***********************99988......22222...........12249************8866789******998777255666***** PP

                 TCEHHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCTTSHHHHHH-EEEEE.................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................. RF
         UCH  97 qqDaqEflaflLdqlhedlnrevaeekwkkhlkrndslitdlfegqlks.................................................. 145
                 q D  Efl+  L++lh +l          +++k  +s+i+++f+g+l+                                                   
  KKY15047.1 303 QSDPVEFLSWFLNNLHLALGG--------SKTKPFSSIIQKIFQGKLRMesqaitarsdatgdrlrfeesstitsnitpyliltldlppaplfrdaiea 393
                 *********************........899***************9999************************************************ PP

                 ..............................EEEEEEB-SEEEEEEESEEETEE.EEE--SEEB--S..EEE-GGGBSS-BTTS-TCS-B.EEEEEEEE CS
                 ..............................xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
         UCH 146 ..............................klklkrlPeiLiihlkRfsynss.ksKlntkvefpe..eldlssylaeekkkkteekkk.YeLiavvv 209
                                               +  l+ lP++L++h+kRfs n+  ++++ t v+fp    ld+s+y++ + + + + +++ Ye +a ++
  KKY15047.1 394 kniipqvplttllqkysglqaseklahrvrHRLLHPLPPYLFFHIKRFSVNKFvSERNPTIVTFPSprGLDMSPYVEPNPSIHPPGEPIyYEMVANII 491
                 *****************************9999*******************************9555*******98665443333322266666555 PP

>> G-patch_2  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.2   1.1e-18   4.9e-15       1      59 [.     788     847 ..     788     849 .. 0.91
   2 ?   -1.0   0.3      0.44     2e+03      25      40 ..     957     972 ..     955     985 .. 0.71

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 1.1e-18
   G-patch_2   1 peeasleeyeevPVeeFGaAlLrGMGWk..egqgigknkkgrvkpeepkrRpgrlGLGakp 59 
                 p++++leey+++PVeeFG+AlLrGMG k  ++ +i + ++g+  p++ + R+g+lG+Gak 
  KKY15047.1 788 PDSSTLEEYAAMPVEEFGMALLRGMGTKrrANGEIVTLSQGD-PPKVKESRAGYLGIGAKG 847
                 899*************************99777777777777.89**************96 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.44
   G-patch_2  25 MGWkegqgigknkkgr 40 
                  GWk+++++ ++  ++
  KKY15047.1 957 DGWKPSDKEARDRIKD 972
                 59**999999886443 PP

>> zf-UBP  Zn-finger in ubiquitin-hydrolases and other protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   2.5e-12   1.1e-08       1      62 [.     119     179 ..     119     181 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 2.5e-12
                 -TTTH--.SSEEEETTT--EEE-TTTT-HHHHHHHHH---EEEETTT--EEETTTTEEBE-G CS
      zf-UBP   1 CseCnsenknlWlCLkCghvgCgrksnghalkHyeetrHplavdlstlsvycyscddevedk 62 
                 Cs+  s+  n+++CL Cg++ +gr  ++ a+ H  e +H++++++++ +v+ +++ +ev ++
  KKY15047.1 119 CSVTLSN-INVYACLVCGKYYQGRGPKSNAYFHSLEVGHHVFINMESKKVFVLPEGYEVLNQ 179
                 7888877.9**********************************************9999876 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     6e-06     0.027       2     106 ..     221     337 ..     220     381 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....... RF
       UCH_1   2 GLEnhivnsYlNslLQvlyfipplrnlalshlakeckkehcLlcElgflfdmldkak..glncqasnFlralssipeasalglileeeeete....... 91 
                 G+ n  +n YlN ++Q+l+++ p+rn+ + h     ++   L+  +g l++ l +a+  + ++  +++l+ +   +  +++ l  +++   e       
  KKY15047.1 221 GMNNIKANDYLNVVVQALAHVSPIRNFFMLHP--FPPNTPQLVIRFGTLVRKLWNARafRDHVSPHELLQEIAVRS-SKRFTLTNQSD-PVEflswfln 315
                 8888899*******************999998..5667778*********99999998777999999999999555.78888864443.2225788888 PP

                 .......xxxxxxxxxxxxxxx RF
       UCH_1  92 .......kssaislssliqsfn 106
                         s+++ +ss+iq++ 
  KKY15047.1 316 nlhlalgGSKTKPFSSIIQKIF 337
                 8888888666678888888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1042 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.51
# Mc/sec: 6206.57
//
Query:       KKY15048.1  [L=680]
Description: putative atp-dependent rna helicase ded1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-48  164.7   0.0    7.5e-48  162.6   0.0    1.9  2  DEAD            DEAD/DEAH box helicase
    4.9e-32  110.6   0.0    1.1e-31  109.5   0.0    1.6  1  Helicase_C      Helicase conserved C-terminal domain
     0.0031   17.5   0.0     0.0051   16.8   0.0    1.3  1  ResIII          Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.019   14.4   0.0      0.033   13.5   0.0    1.3  1  CMS1            U3-containing 90S pre-ribosomal complex subun


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.6   0.0   1.7e-51   7.5e-48       1     174 [.     205     390 ..     205     392 .. 0.94
   2 ?   -0.7   0.0      0.24   1.1e+03      63     105 ..     452     498 ..     420     504 .. 0.69

  Alignments for each domain:
  == domain 1  score: 162.6 bits;  conditional E-value: 1.7e-51
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS...............TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet...............kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliigg 84 
                 t++Q+ +ip+++gg+d++++a+TGsGKT+ fl+p+l++ +++               ++k  p  li++PtreL+ q++++++kf     +r ++++gg
  KKY15048.1 205 TPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFQNgpstnappggsgfgrQRKAFPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGG 303
                 79**********************************99999888888888888888778888*************************9889******** PP

                 SSHHHHHHHHHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
        DEAD  85 vaardqlskldngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlpkdvk 174
                  +   ql+ +++g+d++v+tpgrl+dl+++g+++ls++++lVlDEadr+ld+gf+++i+ri+       +  +  qrq++++SAT+p+d++
  KKY15048.1 304 ADIGTQLRSIERGCDLLVATPGRLVDLIERGRISLSNIKYLVLDEADRMLDMGFEPQIRRIVDGE----DMPPvTQRQTLMFSATFPRDIQ 390
                 ************************************************************99877....345678999*********9987 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.24
                 HHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH...HTT.CSEEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx.xxxxxxxx RF
        DEAD  63 tlnnlkkfkkyidlrvlliiggvaardqlskl...dng.vdivvgtp 105
                 ++++l+ f+ + +  + +i g+ ++r+  ++l   +ng + i+v+t 
  KKY15048.1 452 MADTLSDFLINQSFPATAIHGDRTQRERERALeffRNGrCPILVATA 498
                 44555555555455566676755555555555333577899999985 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   0.0   2.4e-35   1.1e-31       1     111 []     426     535 ..     426     535 .. 0.96

  Alignments for each domain:
  == domain 1  score: 109.5 bits;  conditional E-value: 2.4e-35
                 HHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   1 dkleallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 dk + ll++l ++++gg +lifv+t+++++ ++ +l ++++ ++++hg+ +q+ere++le f++g++ +L+at va+rG+dip v +Vin+dlp+++++
  KKY15048.1 426 DKRSVLLDIL-HTHQGGLTLIFVETKRMADTLSDFLINQSFPATAIHGDRTQRERERALEFFRNGRCPILVATAVAARGLDIPHVMHVINYDLPTDIDD 523
                 5778999999.99****************99777778899*********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 y++riGRtgRag
  KKY15048.1 524 YVHRIGRTGRAG 535
                 **********97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.1e-06    0.0051      28     170 ..     222     386 ..     197     387 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.1e-06
                 EEEESTTSTHHHHH.HHHHHHH-S......................-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........-SEE CS
      ResIII  28 likmaTGtGKTlva.aklierllkkgkee.................kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekdstnkkil 107
                 +  + TG+GKT    + +  + +++g+                     l+l+p+++l++q  +e +kf+     + + ++ g       ++ +  +++l
  KKY15048.1 222 MACAQTGSGKTGGFlFPILSQAFQNGPSTnappggsgfgrqrkafpTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGTqLRSIERGCDLL 320
                 55678******9887999999***999889***************99*********************99887664444444333334556689***** PP

                 EEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.....SEEEEEESS-S CS
      ResIII 108 vttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak...kswreilekfke.....avllglTATpe 170
                 v+t  +l   +     e+ + + +++++++ DEa r+ ++    ++r+i++  +         l ++AT++
  KKY15048.1 321 VATPGRLVDLI-----ERGRISLSNIKYLVLDEADRMLDMgfePQIRRIVDGEDMppvtqRQTLMFSATFP 386
                 ***********.....899999999**************97655999995443222344488899999987 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.5e-06     0.033     182     209 ..     321     348 ..     314     353 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.5e-06
        CMS1 182 vGtpgRildLleeeslsvdeLkrivlDa 209
                 v tpgR++dL+e + +s++++k++vlD 
  KKY15048.1 321 VATPGRLVDLIERGRISLSNIKYLVLDE 348
                 78************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.49
# Mc/sec: 4194.34
//
Query:       KKY15049.1  [L=853]
Description: putative ino80 chromatin remodeling complex [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1036  (0.0577835); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.48
# Mc/sec: 5323.88
//
Query:       KKY15050.1  [L=412]
Description: putative apoptosis-inducing factor 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-29  101.9   0.0      5e-29  101.5   0.0    1.2  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    3.4e-05   24.3   0.0    3.4e-05   24.3   0.0    2.6  3  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0032   16.8   0.0     0.0064   15.8   0.0    1.4  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.097   11.7   0.0        2.5    7.1   0.0    2.2  2  GIDA            Glucose inhibited division protein A
       0.14   11.4   0.1       0.22   10.7   0.1    1.3  1  Attachment_P66  Borrelia burgdorferi attachment protein P66
       0.17   11.5   0.0       0.42   10.2   0.0    1.6  2  Catalase_C      C-terminal domain found in long catalases


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   0.0   1.7e-32     5e-29       2     285 ..      15     321 ..      14     328 .. 0.83

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 1.7e-32
                  SEEEE--SHHHHHHHHHHHH...........HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.....HHHHCHHHHCCCCHCCTCEEEEESCE CS
                  xxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq...........agakvtlvelegtclnggcllskallgvaedaeias.....evvkklnqgielllgeevvkidpgkk 83 
                  +vvv+Gg++AG++ +++l +            ++k  l+   +t+  +++ +++al + + +    +     e +++++  +el+ g ++ +id++++
   KKY15050.1  15 HVVVLGGNFAGISISHHLLRnilpalstspeFSYKLSLL-TPNTHAVWKPGVPQALINEKVKNVDDLflstqEAFSRYGDAFELVQG-KAKSIDRESR 110
                  8*******************9999999988779999999.99999999999999888877666555589**9999999999**9999.9********9 PP

                  EEEETEEECTCEEEEEESEEEE---EEE-BC..TCTTC.TTBEECCSECHHHHHHCCSS-T.SEEEEES-SHHHHHHHHHHHHH..T-EEEEEESSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx RF
  Pyr_redox_2  84 kvklekkkegdeekiaydklvlAtGssprdl..gipGvaenvgklvrtldsaealklkllp.krivvvGgGyiGvElAaalakl..gkevtlveardr 176
                  k+  e   +   e++ yd+lv+ tG ++  +  +i G  e++ k   +ld  + l+      k i++ GgG+ GvE A+ +a     k++tl+   dr
   KKY15050.1 111 KLFAEVHGSTALEELHYDALVITTGTTAASPlwTINGIHEDT-KR-AILDFRKSLE----HcKTILIAGGGAAGVEAAGIIAYHlpEKDITLLSGTDR 202
                  999977777999*************99999999*****4444.22.2333333333....24559**************9544434888********* PP

                  SS.TTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEE....EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEE.E--TTSBE.. CS
                  xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx.. RF
  Pyr_redox_2 177 ll.raldkelsaaleealekeGvevklgtsvkeidgngekle....vvledgeeidadlvvvavGvrpstelleeklglelderggi.vvdeflrt.. 266
                  +l r++ +++s+ +e +l k Gv+v ++ +v+ +++ ++ ++    ++l+++++ ++dl + a+G  p+t++++++  l  +++ +i  + ++lr+  
   KKY15050.1 203 VLpRKVRPSISQDAESQLIKLGVKVEHHIRVQSATPITSTHTpatlLHLTNNTTRAVDLYLDATGAIPNTSFAPKS-WL--TPTSYInTCERTLRVls 297
                  ***********************************999944455589***********************998444.33..46788844455555444 PP

                  ...SSTTEEE-GGGC..TECCSS- CS
                  ...xxxxxxxxxxxx..xxxxxxx RF
  Pyr_redox_2 267 ...nvpgiyaiGDva..ggkggpe 285
                     +++giy  GDva  +++++pe
   KKY15050.1 298 spsSDHGIYCSGDVAswSQHSVPE 321
                  5547***********776666655 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.31   9.2e+02       1      15 [.      15      29 ..      15      35 .. 0.83
   2 !   24.3   0.0   1.1e-08   3.4e-05       2      67 ..     169     237 ..     168     248 .. 0.91
   3 ?   -7.1   4.5         6   1.8e+04       3      12 ..     370     379 ..     369     379 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.31
                EEEEECSSHHHHHHH CS
   Pyr_redox  1 kvvvvGgGyiglElA 15
                +vvv+Gg + g+   
  KKY15050.1 15 HVVVLGGNFAGISIS 29
                89*******998765 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 1.1e-08
                 EEEECSSHHHHHHHHHHHHTT..SEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelg..kkVtvversdkll.rllDeeaskilqeklekngievllntkveeie 67 
                 +++ GgG  g+E+Ag++a +   k++t++   d++l r+  + +s+  + +l k+g++v ++ +v++ +
  KKY15050.1 169 ILIAGGGAAGVEAAGIIAYHLpeKDITLLSGTDRVLpRKVRPSISQDAESQLIKLGVKVEHHIRVQSAT 237
                 89***************7754459**************************************9999877 PP

  == domain 3  score: -7.1 bits;  conditional E-value: 6
                 EEECSSHHHH CS
   Pyr_redox   3 vvvGgGyigl 12 
                 v +GgG +g+
  KKY15050.1 370 VPIGGGGVGV 379
                 559***9997 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.1e-06    0.0064     115     277 ..     115     278 ..      85     292 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.1e-06
  Pyr_redox_3 115 evetsk..etyeAkkviiAtGefdkPnklnipGeeklvkhyskvkefhkyagqkvvViGgknSavDaAlelvrk..gaeVtvvtrgseiekeesdpsy 208
                  ev+ s+  e+++ + ++i tG      +  i+G ++  k+   +   +    + +++ Gg+  +v+aA  ++ +  ++++t++  ++ +  ++  +  
   KKY15050.1 115 EVHGSTalEELHYDALVITTGTTAASPLWTINGIHEDTKRAILDFRKSLEHCKTILIAGGGAAGVEAAGIIAYHlpEKDITLLSGTDRVLPRK--VRP 210
                  5554441268899999******9999999****9965555544444434557889999**********888887789**********999986..455 PP

  Pyr_redox_3 209 slkpdienrleelvke..ekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkks 277
                  s++ d e++l +l  +  ++i+v + + +++ +++ +  +++ ++   +++ d ++ atG  p++sf  ks
   KKY15050.1 211 SISQDAESQLIKLGVKveHHIRVQSATPITSTHTPATLLHLTNNT---TRAVDLYLDATGAIPNTSFAPKS 278
                  578888888877766665667777777777766665544444444...4555667779******9998765 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.023        69     112     153 ..      96     139 ..      83     160 .. 0.73
   2 ?    7.1   0.0   0.00084       2.5       2      51 ..     169     219 ..     168     232 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.023
                 EEEES-EEEEEECTTEEEE.EEETTS.-EEEECEEEE--TT-BT CS
        GIDA 112 eiieeeveeliveekkvkg.vvtedg.etikakavviatGtflk 153
                 e++++++++++ e++k+ + v  ++  e+++ +a vi+tGt  +
  KKY15050.1  96 ELVQGKAKSIDRESRKLFAeVHGSTAlEELHYDALVITTGTTAA 139
                 788889999987775544335554432678889********443 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00084
                 EEEE-SSHHHHHHHHHHHHT..T--EEEEES-GGGTT--SSSSEEE-TTHHH CS
        GIDA   2 viViGgGhAGceAAlaaarl..GakvlLithkldtiaelsCnpsiggiakgl 51 
                 + + GgG AG+eAA  +a      +++L+   +d+++     psi  +a+++
  KKY15050.1 169 ILIAGGGAAGVEAAGIIAYHlpEKDITLL-SGTDRVLPRKVRPSISQDAESQ 219
                 6789**********877753113333333.5556666666666665555555 PP

>> Attachment_P66  Borrelia burgdorferi attachment protein P66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   7.4e-05      0.22     152     202 ..     232     286 ..     216     309 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.4e-05
  Attachment_P66 152 iisaltentstkttttnlefeeatklggalyldy..aipvesispetyiip..yv 202
                      + + t+ tst+t  t l++++ t     lyld   aip  s++p++++ p  y+
      KKY15050.1 232 RVQSATPITSTHTPATLLHLTNNTTRAVDLYLDAtgAIPNTSFAPKSWLTPtsYI 286
                     47789****************************6559***********9984455 PP

>> Catalase_C  C-terminal domain found in long catalases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00014      0.42      56     117 ..     124     184 ..     119     191 .. 0.84
   2 ?   -4.0   0.0       3.4     1e+04     109     130 ..     290     311 ..     282     314 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00014
  Catalase_C  56 aveFDaivvadgaeslfsakataasslfpagrplqllldayrhgKpigalGsgaealkaagi 117
                    +Da+v+++g+ ++     t +     ++r++   +++ +h+K+i + G ga+ ++aagi
  KKY15050.1 124 ELHYDALVITTGTTAASP-LWTINGIHEDTKRAILDFRKSLEHCKTILIAGGGAAGVEAAGI 184
                 678*********777765.4577888888888888899****************99999987 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 3.4
  Catalase_C 109 aealkaagisaeepGVyvadsa 130
                 +++l+ ++ ++++ G+y + ++
  KKY15050.1 290 ERTLRVLSSPSSDHGIYCSGDV 311
                 5667777888889999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 2530.18
//
Query:       KKY15051.1  [L=723]
Description: putative ph response protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00099   19.6   0.0     0.0041   17.6   0.0    2.1  2  Arrestin_C  Arrestin (or S-antigen), C-terminal domain
     0.0043   17.1   0.1      0.061   13.4   0.0    2.7  2  Arrestin_N  Arrestin (or S-antigen), N-terminal domain


Domain annotation for each model (and alignments):
>> Arrestin_C  Arrestin (or S-antigen), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.5   1.4e+04      79      96 ..      82     101 ..      80     109 .. 0.76
   2 !   17.6   0.0   4.6e-07    0.0041      13     120 ..     238     379 ..     226     385 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.5
                 EEEEEEE.----B--..--- CS
  Arrestin_C  79 letevelqiPeeltp..ssa 96 
                 ++++ +l++P  ++p  s++
  KKY15051.1  82 YHITSTLTRPVAIAPvtSCE 101
                 78899999998888876665 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 4.6e-07
                 -SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEEESS................................SEEEEEEEEEEEEE---....B-TTEE CS
  Arrestin_C  13 kkgyvpGetipvtvkidndskkkvkkikvslvqhvdvcafnr..............................snkkeknvvaksdsvkv....tsaakd 77 
                 + g +pG+tipv+v++++ +      + v+l ++ ++ ++ +                               +++  +v +k+ s+++     ++ + 
  KKY15051.1 238 RPGGIPGDTIPVKVSVKHTKA-IRGIVIVTLYRQGRIDMHPPlpmgpqskgktaeyedvypksktglgglhfTSGSPSSVFRKDLSQTTapmiINPYTL 335
                 556689**********96554.3344455666666666665566****999666666666666666666666445555555554444447777555555 PP

                 .EEEEEEE.----B--.---S---EEEEEEEEEEEEEEESSEEE CS
  Arrestin_C  78 kletevelqiPeeltp.ssarnvelikvsYklkvkltlsgsgge 120
                 + e ++++++Pe++ p  s+  + +i+ +Y+++v++++ g+ ge
  KKY15051.1 336 TAEVKASIRVPEDAFPsISNVPGAMISFKYYVEVVIDVCGKLGE 379
                 55666999***9999965557899************98765555 PP

>> Arrestin_N  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   6.8e-06     0.061       2      36 ..      40      74 ..      39     113 .. 0.80
   2 ?   -1.2   0.0      0.21   1.9e+03      98     126 ..     343     374 ..     342     381 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.8e-06
                EEEES-SEEEEETT--EEEEEEE-CCCCTT.CEEE CS
  Arrestin_N  2 tieldkrdevyhpgetvdGkvlleteelkkarkvk 36
                 ield +++ y pg+t++G+v+l+  ++++++ + 
  KKY15051.1 40 YIELDDPWRSYGPGDTISGSVVLTVVKPVRITHLV 74
                699*********************99999887664 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.21
                 E---TTS--SE...CSGEEEEEEEEEEEEECC CS
  Arrestin_N  98 felPknlpsSf...eGkaggvrYevkvtldrp 126
                 +++P+++ +S+    G+  + +Y+v+v++d  
  KKY15051.1 343 IRVPEDAFPSIsnvPGAMISFKYYVEVVIDVC 374
                 678999988887778999999*******9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.48
# Mc/sec: 4566.42
//
Query:       KKY15052.1  [L=288]
Description: putative methylisocitrate lyase (2-methylisocitrate lyase) [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-41  141.3   0.1    3.9e-41  141.1   0.1    1.0  1  PEP_mutase  Phosphoenolpyruvate phosphomutase
    2.7e-17   62.5   0.1    3.4e-17   62.2   0.1    1.1  1  ICL         Isocitrate lyase family


Domain annotation for each model (and alignments):
>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.1   0.1   4.4e-45   3.9e-41       4     236 ..       2     244 ..       1     247 [. 0.91

  Alignments for each domain:
  == domain 1  score: 141.1 bits;  conditional E-value: 4.4e-45
  PEP_mutase   4 LhakgeplvlpnawDalsakiveeagfkalatsSlavaasl.GvpDgeelpleellaavraiaevv.slPlivDledGygespeevaetvrrliaaGvv 100
                 L +k++++v p ++D++sa+++ +agf++l ++++++++s  G +D   ++ + ++++++ ia+   s+Pli+D+++Gyg  p  v++t+r+ +aaG++
  KKY15052.1   2 LTDKSKIVVGPGVYDGISARMALKAGFECLYMTGAGTSMSRlGWADLGLATQTDMVSNASMIASIDpSIPLIADADTGYGG-PVMVSRTIRKYAAAGIA 99 
                 5667889999******************************88*****************999997768************9.***************** PP

  PEP_mutase 101 gvniEDk...kkn..d.aerqlldieefaekiaaaraaaeeag..fvinARtdalllsagagleeaieRaraYaeAGAdgvfvpglqkdaeiaelvaav 191
                 +++iED+   k +     +++l++ e f ++++aa++a+++ g  ++i+ARtda   ++++g+eea eR++  +e G d+vf   l + +e++e+v+++
  KKY15052.1 100 ALHIEDQvqeK-RcgHlLGKELVTREIFYSRLRAAVQAKNDYGsdILIIARTDA---RQKYGFEEACERLKGAVEIGVDAVFPEALPDVDELKEMVKRI 194
                 *******7531.2444688899999****************9999*********...37999************************************* PP

  PEP_mutase 192 .d..vplnvvp.l.kgtlsvaelaelGvarislgnhllraalaalreaae 236
                  +  + ln++  + +++l+v++ +++G+++ ++    ++aa+  +r+ ++
  KKY15052.1 195 gNtpCLLNMISgGhTPDLTVEQAKDVGFRMMIFPCLGFEAAMVGMRDWMK 244
                 65555578777434446****************************99876 PP

>> ICL  Isocitrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.1   3.7e-21   3.4e-17     139     234 ..      59     153 ..      51     196 .. 0.91

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 3.7e-21
                 HHTTS--------EEEE-TT-SSSHHHHHHHHHHHHHTT-SEEEE-SB-TT---------EEE--HHHHHHHHHHHHHHHHHTT---EEEEE--GG CS
         ICL 139 ereklanvdylrpiiadadtGhGGltavvkltklfierGaaGihiedqasgtkkcGhmaGkvlvpiqehinrlvairaqadilgsdllvvartdse 234
                 + +++a +d   p+iadadtG+GG   v +  + +   G a +hiedq    k+cGh+ Gk lv+ +    rl a+  + + +gsd+l++artd+ 
  KKY15052.1  59 NASMIASIDPSIPLIADADTGYGGPVMVSRTIRKYAAAGIAALHIEDQVQ-EKRCGHLLGKELVTREIFYSRLRAAVQAKNDYGSDILIIARTDAR 153
                 567899******************************************85.79********************9988888889***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1837.22
//
Query:       KKY15053.1  [L=467]
Description: putative prenyl protease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-66  222.7   9.8    3.2e-66  222.7   9.8    1.8  2  Peptidase_M48_N  CAAX prenyl protease N-terminal, five membra
    7.1e-48  163.0   0.0    1.2e-47  162.2   0.0    1.3  1  Peptidase_M48    Peptidase family M48
  ------ inclusion threshold ------
      0.017   14.4   0.1      0.037   13.2   0.0    1.6  2  Peptidase_M56    BlaR1 peptidase M56
      0.071   12.9   0.2       0.23   11.2   0.2    1.8  1  DUF4538          Domain of unknown function (DUF4538)
       0.14   12.2   0.1       0.28   11.3   0.1    1.4  1  Reprolysin_5     Metallo-peptidase family M12


Domain annotation for each model (and alignments):
>> Peptidase_M48_N  CAAX prenyl protease N-terminal, five membrane helices
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.7   9.8     9e-70   3.2e-66       1     182 []      48     232 ..      48     232 .. 0.97
   2 ?   -1.4   0.1      0.52   1.9e+03     106     117 ..     342     353 ..     306     382 .. 0.59

  Alignments for each domain:
  == domain 1  score: 222.7 bits;  conditional E-value: 9e-70
  Peptidase_M48_N   1 qlrklketkkvPeeladaitkekfdksraYgldksrfglvsslyslilllallllgllpflwklsgkl...lgl..daeseilqslvfllllsl 89 
                      q+++l+++k +P++l ++it+e+fdks+aYg++k++fg++ +lys+i+++a++++++lp++w l+g +   + +    ++ei+++lvf++++ +
       KKY15053.1  48 QYKVLQRKK-PPPTLGNEITQETFDKSQAYGRAKAKFGFIAGLYSQIQNTAFIVYDVLPKIWGLTGLWltqY-FpeRFQGEITHTLVFFFTFNI 139
                      99*****97.*********************************************************98653.15678**************** PP

  Peptidase_M48_N  90 istlislPfslYstFviEekhGfnkqtlklfikdklkslllalviglpllaallwiiewggeyfylylwlfllvfslllmtiyPtlIaPLFnK 182
                      istl+slP+s+YstFv+Eek+Gfnkqt+kl+ +d+lk+++l++++g+pl+aa+l+ii+ +g++f++ylwlf + ++l+ +tiyP++I PLFnK
       KKY15053.1 140 ISTLLSLPISYYSTFVLEEKFGFNKQTVKLWATDMLKGQALMVAFGTPLIAAFLKIIQTTGTRFFYYLWLFSIGVQLFGITIYPIFILPLFNK 232
                      ********************************************************************************************9 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.52
  Peptidase_M48_N 106 iEekhGfnkqtl 117
                      + e +Gf kq +
       KKY15053.1 342 LYESFGFHKQHP 353
                      334444444443 PP

>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.2   0.0   3.3e-51   1.2e-47       2     192 ..     236     438 ..     235     441 .. 0.96

  Alignments for each domain:
  == domain 1  score: 162.2 bits;  conditional E-value: 3.3e-51
                    --SSHHHHHHHHHHHHTT-..-EEEEEEE-GGGT....-EEEEESSS-EEEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48   2 lreaelkevveelakeaglpkpltkvyvvnspkr....NAFalgggknkrivltdgLlkqllseeelaaVlGHElGHikhrhsvvslivsllasil 93 
                    l+ +elk+ ve+lak++++  pl+++yv++++kr    NA+++g  ++k+iv++d+L+ ++ +++e+ aVl+HElGH+   h+++ l +++  +++
     KKY15053.1 236 LEPGELKSGVEDLAKKLNF--PLKELYVIDGSKRsahsNAYFYGLPWKKHIVIYDTLI-EKSETKEVVAVLAHELGHWGLSHTTKLLGIAQFHMFY 328
                    66789**************..*************************************.************************************* PP

                    HHHHHHHHTT-SHHHHHTT--S---HHHHHHHHHHTT.............HHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHTT--S---HHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48  94 lllglallisraeedaagafldalavliglliillfl.............alSRkrEyqADeagvellkrakdlvraliklakdlerqdvsaslrs 176
                    ++ +++++i + ++  +++f+++ +++ig++  ++ +              lSRk+Ey+AD+++v+l++ + +l+r+likl+ +++++ ++++ +s
     KKY15053.1 329 IFALFSVFIDNRSLYESFGFHKQHPIIIGFIL-FSDAlapmdtvvkllmnILSRKFEYEADAFAVKLGY-STELARSLIKLQIQNLSTMDADWIYS 422
                    ***************************99664.55557*******************************.************************** PP

                    HHS-SS--HHHHHHHH CS
                    xxxxxxxxxxxxxxxx RF
  Peptidase_M48 177 ellstHPplleRiqal 192
                     ++++HP+l+eR++al
     KKY15053.1 423 SYHYSHPILPERLKAL 438
                    **************98 PP

>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     1e-05     0.037      78     206 ..     171     309 ..     114     328 .. 0.74
   2 ?   -2.5   0.0      0.63   2.2e+03     240     280 ..     381     419 ..     371     438 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1e-05
  Peptidase_M56  78 askvlddkas......alatdvkkvewktilkillliWivgalillly.liaallvlkkrfvrklgklraeelkeaLkeakeemq..lkrnikir. 163
                    a  +l+ +a       +l +++ k+ + t + +  ++W++ + + l+  +i+ +++l   ++ kl++l++ elk+ +++  ++ +  lk    i  
     KKY15053.1 171 ATDMLKGQALmvafgtPLIAAFLKIIQTTGTRFFYYLWLFSIGVQLFGiTIYPIFILP--LFNKLSPLEPGELKSGVEDLAKKLNfpLKELYVIDg 264
                    3334444443444445777888888888999999******998865541577777777..9*******************9999987888888861 PP

  Peptidase_M56 164 .lsssidsPavlgl.lkprIvlPadflkklsdeeleyillHElaH 206
                     + s  ++  + gl +k  Iv+ + + +k + +e   +l+HEl H
     KKY15053.1 265 sKRSAHSNAYFYGLpWKKHIVIYDTLIEKSETKEVVAVLAHELGH 309
                    144556677777864899*************************99 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.63
  Peptidase_M56 240 lDqElaCDaaVLarlekeerkeYgetlLklllaa.svfkksv 280
                    +  E ++Da++++       +e +++l+kl+++  s++++  
     KKY15053.1 381 RKFEYEADAFAVKL---GYSTELARSLIKLQIQNlSTMDADW 419
                    55688899999888...7788889999999886414444444 PP

>> DUF4538  Domain of unknown function (DUF4538)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   6.3e-05      0.23       9      32 ..     209     232 ..     202     233 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.3e-05
     DUF4538   9 lvggvvgliglalYPiiiaPllhp 32 
                 l++  v l g+++YPi+i Pl ++
  KKY15053.1 209 LFSIGVQLFGITIYPIFILPLFNK 232
                 555558899***********9875 PP

>> Reprolysin_5  Metallo-peptidase family M12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   7.9e-05      0.28     137     161 ..     294     317 ..     262     320 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.9e-05
  Reprolysin_5 137 vstatevqvvaHElGHnfGavHDcd 161
                   ++t++ v v+aHElGH +G +H+ +
    KKY15053.1 294 SETKEVVAVLAHELGH-WGLSHTTK 317
                   6788999*********.9****975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.51
# Mc/sec: 2735.93
//
Query:       KKY15054.1  [L=238]
Description: hypothetical protein UCRPC4_g06482 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1108  (0.0617993); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.54
# Mc/sec: 1333.49
//
Query:       KKY15055.1  [L=483]
Description: putative 60s ribosome biogenesis protein mak11 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-10   39.8   0.0       0.38   11.7   0.0    6.4  7  WD40         WD domain, G-beta repeat
    1.8e-05   24.9   0.0        3.5    8.0   0.0    4.5  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
       0.08   11.6   0.1        4.5    5.8   0.1    2.2  2  Nup160       Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0079        47       7      37 ..      72     113 ..      67     114 .. 0.63
   2 !   11.7   0.0   6.4e-05      0.38       4      36 ..     146     178 ..     143     178 .. 0.83
   3 ?    3.6   0.0     0.023   1.4e+02      12      38 .]     214     241 ..     202     241 .. 0.83
   4 ?   -0.8   0.0      0.55   3.3e+03      16      26 ..     274     284 ..     262     294 .. 0.83
   5 ?   -1.1   0.0      0.73   4.4e+03      15      37 ..     328     342 ..     318     343 .. 0.74
   6 !    9.1   0.0   0.00043       2.6      24      38 .]     397     411 ..     382     411 .. 0.78
   7 ?   -0.2   0.0      0.35   2.1e+03       2      17 ..     432     447 ..     431     458 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0079
                 EESS.SSEEEEE.......EETTSSE........EEEEETTSEEEEE CS
        WD40   7 ltGH.ssvtsla.......fspdgaw........lasGsdDgtvriW 37 
                 + +H s +++la                      lasG+ D  v ++
  KKY15055.1  72 FNAHsSAIRCLAlsplpepS-----TlsenlrviLASGGTDERVNLY 113
                 679*666****866544440.....2445555566788878777665 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 6.4e-05
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvri 36 
                 l++l  H ss+tsl f+  +++l+ + +D+t+ i
  KKY15055.1 146 LGSLLQHnSSITSLHFPTRSKLLS-AAEDNTISI 178
                 678889*788****9999999985.677***986 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.023
                 SEEEEEEETTSSEEEEE..ETTSEEEEEE CS
        WD40  12 svtslafspdgawlasG..sdDgtvriWd 38 
                 +v+++a++p+ ++++s   +  +  r+W+
  KKY15055.1 214 GVNDFAVHPSMKLMVSVgkG-ERCMRLWN 241
                 499**********9865255.*******8 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.55
                 EEEETTSSEEE CS
        WD40  16 lafspdgawla 26 
                 + +spdg+ +a
  KKY15055.1 274 IEWSPDGDEFA 284
                 67*****9776 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 0.73
                 EEEEETTSSEEEEEETTSEEEEE CS
        WD40  15 slafspdgawlasGsdDgtvriW 37 
                 s+        la +++Dg + ++
  KKY15055.1 328 SV--------LAVSTEDGRIVFY 342
                 33........677889**99876 PP

  == domain 6  score: 9.1 bits;  conditional E-value: 0.00043
                 EEEEEETTSEEEEEE CS
        WD40  24 wlasGsdDgtvriWd 38 
                 +++++s Dg vriW+
  KKY15055.1 397 LVVTASSDGAVRIWS 411
                 4567766*******5 PP

  == domain 7  score: -0.2 bits;  conditional E-value: 0.35
                 EEEEEEE.SSSSEEEEE CS
        WD40   2 qclrtlt.GHssvtsla 17 
                 ++l+t++ G   vt+l+
  KKY15055.1 432 RLLGTYEtGN-RVTCLK 447
                 6778886244.8****5 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00059       3.5      36      81 ..     151     195 ..     132     200 .. 0.86
   2 !    6.1   0.0    0.0022        13      35      62 ..     265     292 ..     236     305 .. 0.78
   3 ?    2.8   0.0     0.025   1.5e+02      51      68 ..     328     345 ..     312     360 .. 0.86
   4 ?    1.6   0.0     0.059   3.5e+02      50      75 ..     395     420 ..     392     447 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00059
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +++s+++sL++    klL  a +d+++++   ++ +vv+++++ + 
   KKY15055.1 151 QHNSSITSLHFPTRSKLLS-AAEDNTISISRTKDFEVVSTIKAPRP 195
                  57899******99999886.6799***************9998765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0022
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgev 62 
                  + +++e r ++W+pdg  +ava++ g +
   KKY15055.1 265 KYSSGEGRRIEWSPDGDEFAVAFERGVI 292
                  556677799**************99966 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.025
  ANAPC4_WD40  51 klLavaysdgevrlldae 68 
                  ++Lav+++dg++ +++ +
   KKY15055.1 328 SVLAVSTEDGRIVFYSTN 345
                  699********9999865 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.059
  ANAPC4_WD40  50 gklLavaysdgevrlldaesgkvvhs 75 
                  g l + a sdg+vr+ + e   ++ +
   KKY15055.1 395 GFLVVTASSDGAVRIWSLELSSLLPK 420
                  556778999******99987776654 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0019        11     242     350 ..     237     390 ..     232     398 .. 0.60
   2 ?    5.8   0.1   0.00075       4.5     230     255 ..     395     420 ..     310     439 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0019
                 EEEEETTTTEEEEEEE--.-SSSTTS--SSEESEEESSSSEEEE....................................................... CS
      Nup160 242 LrvWnlltgkclatidllrdeeaqdessskstldpaesslirvs..............................................dggqsylvv 294
                 +r+Wnl tgk + + + +r++ + +++s++   +  e  +i  s                                              ++ +s l+v
  KKY15055.1 237 MRLWNLVTGKKAGVLNFTRETLESVKESKY---SSGEGRRIEWSpdgdefavafergvivygadsvpsckilptpltkihqmrylgikssNKPSSVLAV 332
                 8*************9999655555555555...666677777776666666666666666666666666666666666666666666655555555555 PP

                 .E--GGG-EEEEEE..EEEEE-....SSSEEEEES-S------S-TT..--EEEEEEEEE- CS
      Nup160 295 tyspssggefkvwk..vkkedtsvs.lglvdlfleqtivpadpdssn..vweLrDfaltss 350
                      ++g++ ++   v+++d  +  +g    ++++t+v++   +     + ++Df ++s+
  KKY15055.1 333 ST---EDGRIVFYStnVSESDGTSTeSGKPTTIPDATLVSKLGGKDSgvSGRIKDFEVVSA 390
                 22...55555555433555443322366666666666664443332246666666666665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.00075
                 TTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 230 qtylfalsrdgkLrvWnlltgkclat 255
                   +++++s+dg +r+W+l+  ++l+ 
  KKY15055.1 395 GFLVVTASSDGAVRIWSLELSSLLPK 420
                 45799*************98877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.51
# Mc/sec: 2867.93
//
Query:       KKY15056.1  [L=1330]
Description: putative myb and hsa domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-18   64.8   0.1    1.8e-17   63.3   0.1    1.9  1  Myb_DNA-bind_6   Myb-like DNA-binding domain
    1.5e-12   47.7   0.6    1.5e-12   47.7   0.6    3.3  3  HSA              HSA
    0.00081   19.5   0.5     0.0018   18.4   0.5    1.6  1  Myb_DNA-binding  Myb-like DNA-binding domain
  ------ inclusion threshold ------
       0.15   12.3   0.1       0.52   10.6   0.0    1.9  2  SANT_DAMP1_like  SANT/Myb-like domain of DAMP1


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.1   4.1e-21   1.8e-17       1      59 [.     772     842 ..     772     843 .. 0.96

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 4.1e-21
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealn..........rRtpkqcfdrwkn..kLrpkisrkkwskeedir 59 
                     Wt+ Ed++L+klv++y+++W++I+++l           rRtp++cf+rw+   +L++++s++++++++++r
      KKY15056.1 772 WTHTEDDELRKLVKDYSYNWSLISSCLTpksmyhsgyeRRTPWECFERWIGleGLPADMSKTPYFRAYHSR 842
                     ***************************669*********************8899**********998876 PP

>> HSA  HSA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.6   3.2e-16   1.5e-12       3      53 ..     511     560 ..     509     566 .. 0.93
   2 ?    2.7   0.6     0.036   1.6e+02       5      25 ..     882     902 ..     879     919 .. 0.81
   3 ?   -4.1   0.6         4   1.8e+04      29      43 ..    1203    1217 ..    1198    1221 .. 0.58

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 3.2e-16
                 XXXXXXX--HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--XXX CS
         HSA   3 eperrqkthhdylLeeilwhakdfkeerkskrakakklaravakyhnniek 53 
                 ep+r   +h+d lL++++w+++df+eerk+k a ak +a ++a +++  +k
  KKY15056.1 511 EPPR-ATSHWDFLLDHMKWLRTDFREERKWKLAAAKGMAEWCAEWWASDAK 560
                 8999.*****************************************97766 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.036
                 XXXXX--HHHHHHHTTHHHHH CS
         HSA   5 errqkthhdylLeeilwhakd 25 
                 err+ t+h ++++++  +ak 
  KKY15056.1 882 ERRRATKHLAMIDAMRKLAKK 902
                 8999***********999986 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 4
                  HHHHHHHHHHHHHHH CS
         HSA   29 erkskrakakklara 43  
                  ++++++a+ + l++a
  KKY15056.1 1203 FQQQQQAQQRNLNQA 1217
                  455555666666555 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.5     4e-07    0.0018       3      42 ..     771     820 ..     769     823 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4e-07
                      SSBHHHHHHHHHHHHHHTTCHHHHHHHHT..S........S-HHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhGnrWkkIaerlg..g........Rtekqcrsrw 42 
                       Wt  Ed+ L ++vk +  +W++I++ l   +        Rt+ +c +rw
       KKY15056.1 771 HWTHTEDDELRKLVKDYSYNWSLISSCLTpkSmyhsgyerRTPWECFERW 820
                      7*************************77653266667777******9999 PP

>> SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.1   1.4e+04      37      48 ..     668     679 ..     667     680 .. 0.89
   2 ?   10.6   0.0   0.00012      0.52      25      52 ..     768     795 ..     749     809 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.1
  SANT_DAMP1_like  37 Lfdlckeydlrf 48 
                      L dl+++ d r+
       KKY15056.1 668 LSDLAERMDARW 679
                      789********* PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00012
  SANT_DAMP1_like  25 keedWtkeetdyLfdlckeydlrfvvia 52 
                      ++++Wt++e d L +l+k+y   + +i 
       KKY15056.1 768 TSSHWTHTEDDELRKLVKDYSYNWSLIS 795
                      4578*********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1167  (0.0650901); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.98u 0.33s 00:00:01.31 Elapsed: 00:00:00.56
# Mc/sec: 7204.55
//
Query:       KKY15057.1  [L=1673]
Description: putative clathrin heavy chain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     4e-199  652.5  38.7    5.4e-34  117.1   0.3    7.5  7  Clathrin         Region in Clathrin and VPS
    1.7e-35  119.6   1.6    1.5e-08   34.5   0.0    6.8  6  Clathrin_propel  Clathrin propeller repeat
    1.4e-31  108.1   0.5    7.9e-31  105.8   0.1    2.6  2  Clathrin_H_link  Clathrin-H-link
      8e-05   21.9   0.1    0.00021   20.6   0.1    1.8  1  Clathrin-link    Clathrin, heavy-chain linker
    0.00012   22.6  10.1         15    6.8   0.1    9.0  9  TPR_14           Tetratricopeptide repeat
    0.00038   20.3  10.2        1.1    9.5   0.0    6.9  7  TPR_7            Tetratricopeptide repeat
    0.00084   19.6   1.9        2.8    8.2   0.0    5.7  4  Vps39_1          Vacuolar sorting protein 39 domain 1
  ------ inclusion threshold ------
      0.019   15.2   7.6        1.4    9.3   0.0    5.0  5  TPR_8            Tetratricopeptide repeat
      0.047   13.5   9.0        1.5    8.7   0.2    4.9  5  TPR_1            Tetratricopeptide repeat
       0.15   12.4  11.7        2.2    8.7   0.1    5.4  6  TPR_12           Tetratricopeptide repeat
       0.61   10.6  10.2         35    5.0   0.0    6.2  6  TPR_19           Tetratricopeptide repeat
        2.7    8.0   6.6         18    5.4   0.0    5.0  4  TPR_10           Tetratricopeptide repeat
        3.8    6.5  10.8        4.4    6.2   0.2    3.9  4  Coatomer_WDAD    Coatomer WD associated region


Domain annotation for each model (and alignments):
>> Clathrin  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.3   9.8e-23   1.4e-19       5     142 ..     540     677 ..     536     678 .. 0.92
   2 !   77.1   0.1   8.9e-25   1.2e-21       3     142 ..     687     825 ..     685     826 .. 0.93
   3 !   97.9   1.0   3.3e-31   4.6e-28       7     135 ..     839     963 ..     834     970 .. 0.94
   4 !  117.1   0.3   3.9e-37   5.4e-34       2     139 ..     980    1119 ..     979    1123 .. 0.97
   5 !   97.7   0.1   3.9e-31   5.4e-28       2     142 ..    1129    1267 ..    1128    1268 .. 0.96
   6 !  110.3   0.5   4.9e-35   6.8e-32       1     141 [.    1274    1417 ..    1274    1419 .. 0.97
   7 !  104.7   3.8   2.6e-33   3.6e-30       1     143 []    1423    1565 ..    1423    1565 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 9.8e-23
                 CTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTS..S---S-TTHHHHHHHT-SSHHHHHHHHHTTXTHSS CS
    Clathrin   5 tdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflk..knnnydlekvaklcekadlyeeavilykkinefkk 101
                  + +d++rvv++f +++++++++ +L ++lk +++e+ +lqt+lle+++ + + q+++++l   ++++yd++++  lce+a+ly++a++  ++   +k+
  KKY15057.1 540 GPLVDIDRVVDIFLSQNMIQQATAFLLDALKDNKPEQGQLQTRLLEMNLINAP-QVADAILGneMFSYYDKARISALCENAQLYQRALENTDDPAVIKR 637
                 6789************************************************6.********99*********************************** PP

                 HSSXSSSSHCSCHHH..HTTTTTXXSHHHHHHHHHHHSSXSHH CS
    Clathrin 102 aisllkklkdfddai..eyaakvsnpelwekllealldkkpfe 142
                   +++++ + ++ ++   y++++s +++++ l e+l  + +++
  KKY15057.1 638 --NIVRT-DKLNPEWlmSYFGRLSVEQTLDGLNEMLKTNIRQN 677
                 ..54455.555666668******************99998887 PP

  == domain 2  score: 77.1 bits;  conditional E-value: 8.9e-25
                 CCCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHT..TXTH CS
    Clathrin   3 eltdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavilykk..inef 99 
                 +++d +  +r+++lfe++   e l++yL ++++    e+p+++ +++e++ ++++ +e+e++++ +n+y++ekv +++ +a+l+e+++++  +  +n++
  KKY15057.1 687 KFSDLLGPTRLIELFERYRTAEGLYYYLGSIVN--LSEDPDVHYKYIEAATTMGQMTEVERICRDSNHYNPEKVKNFLIEARLTEQLPLIIVCdrFNFV 783
                 67889999************************5..4478**************************************************888888**** PP

                 SSHSSXSSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSXSHH CS
    Clathrin 100 kkaisllkklkdfddaieyaakvsnpelwekllealldkkpfe 142
                 k++++ + + ++  + ie++++  np   + +++all  +++e
  KKY15057.1 784 KDLVT-YLYRNQQYKSIEVYVQHVNPSRTPAVIGALLAMDCEE 825
                 **999.8888899999********************9988765 PP

  == domain 3  score: 97.9 bits;  conditional E-value: 3.3e-31
                 TS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHTTXTHSSHSSX CS
    Clathrin   7 pidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavilykkinefkkaisl 105
                 +i+++++v ++e++++l+ ll++Le+ l+ ++++ +a+++al+++y++++   ++e+flk+n+ yd+ +v+k+cek+d+  +a+i y+k +++ ++i++
  KKY15057.1 839 AIPMDELVAEVESQNRLKILLPFLEASLAAGHQQ-QAIYNALAKIYIDSNH--DPEKFLKENDLYDTLTVGKYCEKRDPN-LAYIAYRKGQNDIELINI 933
                 7899************************988666.***************7..***************************.****************** PP

                 SSSSHCSCHHHHTTTTTXXSHHHHHHHHHH CS
    Clathrin 106 lkklkdfddaieyaakvsnpelweklleal 135
                 ++++++++ +++y+ ++ +pe+w+++l++ 
  KKY15057.1 934 TNENSMYRAQARYLLERADPEVWKFVLGEN 963
                 **************************9875 PP

  == domain 4  score: 117.1 bits;  conditional E-value: 3.9e-37
                  CCCCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS..--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHTT CS
    Clathrin    2 ieltdpidlsrvvklfeeaglleelleyLekvlkedsk..enpalqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavilykki 96  
                  +e+++p+ +s  vk+f ea+++ el+e+Lek+++e s+  +n +lq++l+ ++ak d+  +l++++++++ +++e++a++c +++lyeea+++ykk+
  KKY15057.1  980 PESNEPEKVSVAVKAFLEADMPAELIELLEKIILEPSPfsDNGSLQNLLMLTAAKADK-GRLMDYIQRLSDFNAEEIANMCIDQGLYEEALEIYKKV 1075
                  6899********************************99*******************9.************************************** PP

                  XTHSSHSSX.SSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSX CS
    Clathrin   97 nefkkaisl.lkklkdfddaieyaakvsnpelwekllealldkk 139 
                  ++++ a+++ +++  ++d+a +ya++v+ pe+w+k+++a+ld  
  KKY15057.1 1076 ENHSAAANVlVDHIVSIDRAQDYAEQVDLPEVWSKVAKAQLDGL 1119
                  ********88******************************9975 PP

  == domain 5  score: 97.7 bits;  conditional E-value: 3.9e-31
                  CCCCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHTTXT CS
    Clathrin    2 ieltdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavilykkine 98  
                  i+++dp+++++v++ + +ag+ e l +yL++++  ++  +pa++tal+ +ya+ d++ ele+fl++ n  d+e  ++++ +++ ++ a+i ++ i++
  KKY15057.1 1129 IKANDPSNYNEVIETATHAGKDEDLVKYLKMARR-TQ-REPAVDTALAFCYARLDQLPELEDFLRSPNVADVEASGDKAYEEGFHQAAKIFFTSISN 1223
                  7899*****************************5.43.55********************************************************* PP

                  HSSHSSXSSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSXSHH CS
    Clathrin   99 fkkaisllkklkdfddaieyaakvsnpelwekllealldkkpfe 142 
                  ++k++++l +l+d++ a+e a+++++ ++w+++ ea+++kk+f+
  KKY15057.1 1224 WAKLATTLVHLEDYQAAVECARRANSVKVWKQVHEACVSKKEFR 1267
                  ****************************************9986 PP

  == domain 6  score: 110.3 bits;  conditional E-value: 4.9e-35
                  CCCCCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---.S-TTHHHHHHHT-SSHHHHHHHHHTT CS
    Clathrin    1 lieltdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnn.ydlekvaklcekadlyeeavilykki 96  
                  l+++ ++++l+ +vk++e++g++eel+++Le++l + +++++ ++t+l +++ ky++ ++++e+lk +++ ++++k+++ ce+a+l+ e+++ly ++
  KKY15057.1 1274 LNLIVHAEELQDLVKQYEREGYFEELISLLEAGL-GLERAHMGMFTELGIALSKYHP-ERVMEHLKLFWSrINIPKMIRGCEEAHLWPELIFLYCHF 1368
                  68899*****************************.999******************6.*************************************** PP

                  XTHSSHSS.X.SSSSHCSCHHH..HTTTTTXXSHHHHHHHHHHHSSXSH CS
    Clathrin   97 nefkkais.l.lkklkdfddai..eyaakvsnpelwekllealldkkpf 141 
                  +e+++a+  +  +  +++++    ++++kv n e+++++l+++l ++p 
  KKY15057.1 1369 DEWDNAALaMmERSADAWEHHSfkDIIVKVANLEIYYRALNFYLLEEPL 1417
                  ********966*********************************98876 PP

  == domain 7  score: 104.7 bits;  conditional E-value: 2.6e-33
                  CCCCCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHH...HHH CS
    Clathrin    1 lieltdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavi...lyk 94  
                  l+ lt++id++rvv+lfe+ +++++++++L +v+   s++ +a+++a+++l+++++d++ l ++ ++++nyd+ ++a+++ek++l+ ++ i   +y+
  KKY15057.1 1423 LQALTPRIDVNRVVRLFEKSDNIPLIKPFLINVQ---SQNKRAVNNAINDLLIEEEDYKTLKDSAENYDNYDAVELAQRLEKHELIFFRQIaaqIYR 1516
                  67799*****************************...8899******************************************************** PP

                  TTXTHSSHSSXSSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSXSHHH CS
    Clathrin   95 kinefkkaisllkklkdfddaieyaakvsnpelwekllealldkkpfel 143 
                  k+++++k+i l+k++k+++daie+ a +++ e++e+ll++++d++ +e+
  KKY15057.1 1517 KNKRWEKSIALSKQDKLYRDAIETSAISRKREVVEDLLRYFVDIGSREC 1565
                  *******************************************998775 PP

>> Clathrin_propel  Clathrin propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00011      0.15       5      25 ..      17      41 ..      15      52 .. 0.78
   2 !   10.6   0.0   0.00041      0.57       3      36 ..      58      90 ..      56      91 .. 0.89
   3 !   34.5   0.0   1.1e-11   1.5e-08       1      37 []     147     186 ..     147     186 .. 0.97
   4 !   10.1   0.0   0.00058       0.8       2      37 .]     198     233 ..     197     233 .. 0.93
   5 !   28.0   0.0   1.3e-09   1.8e-06       5      37 .]     254     286 ..     251     286 .. 0.94
   6 !   16.7   0.1   4.8e-06    0.0066       1      37 []     294     328 ..     294     328 .. 0.97

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
                     EEEECCCEEEEECCEEEEEE....C CS
  Clathrin_propel  5 qiinfptatneswlfiiain....g 25
                     + i+f ++t es+ ++++++    g
       KKY15057.1 17 ASIGFNSCTLESDQYVCIREklddG 41
                     78******************54442 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00041
                     TCEEEECCCEEEEECCEEEEEE..CETEEEEEEEET CS
  Clathrin_propel  3 nsqiinfptatneswlfiiain..gtkkGqvqlysv 36
                     ++++in+++a+++ ++ +ia++  g +   +q++++
       KKY15057.1 58 IRRPINADSAIMHWSKLVIALKaqGKT---IQIFDL 90
                     6889******************77666...999998 PP

  == domain 3  score: 34.5 bits;  conditional E-value: 1.1e-11
                      CTTCEEEECCCEEEEECCEEEEEE...CETEEEEEEEETT CS
  Clathrin_propel   1 nansqiinfptatneswlfiiain...gtkkGqvqlysve 37 
                      +a++qiin++++++e+w + i+i+   g+++G +qlys e
       KKY15057.1 147 LAGCQIINYRVNDDEKWMVAIGISqqqGRVVGSMQLYSKE 186
                      589***********************************87 PP

  == domain 4  score: 10.1 bits;  conditional E-value: 0.00058
                      TTCEEEECCCEEEEECCEEEEEECETEEEEEEEETT CS
  Clathrin_propel   2 ansqiinfptatneswlfiiaingtkkGqvqlysve 37 
                      a +   ++++a+ +  lf +a++++++ ++++++++
       KKY15057.1 198 AAFGTLKVEGAATPYKLFSFAVRTATGAKLHVVEID 233
                      778899999*************************97 PP

  == domain 5  score: 28.0 bits;  conditional E-value: 1.3e-09
                      EEEECCCEEEEECCEEEEEECETEEEEEEEETT CS
  Clathrin_propel   5 qiinfptatneswlfiiaingtkkGqvqlysve 37 
                      + ++fp+a+++s+++ i++ +tk+G+++ly++e
       KKY15057.1 254 ATNDFPVAMQVSQKYSIIYMITKYGFIHLYDLE 286
                      489****************************98 PP

  == domain 6  score: 16.7 bits;  conditional E-value: 4.8e-06
                      CTTCEEEECCCEEEEECCEEEEEECETEEEEEEEETT CS
  Clathrin_propel   1 nansqiinfptatneswlfiiaingtkkGqvqlysve 37 
                      n++s +++f t+ +  + +i+++n  +kGqv+++sv+
       KKY15057.1 294 NRISSETIFITSSDSESAGIVGVN--RKGQVLSVSVD 328
                      79999*******************..*********98 PP

>> Clathrin_H_link  Clathrin-H-link
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.1   5.7e-34   7.9e-31       1      66 []     354     419 ..     354     419 .. 0.99
   2 ?   -2.7   0.0       4.3   5.9e+03      16      32 ..    1231    1247 ..    1229    1249 .. 0.78

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 5.7e-34
  Clathrin_H_link   1 gLpGaddlyvqqFeqllaqgnykeAakvAaespqgiLRtpetIqrfkqvpaqpgqlspllqYFgtL 66 
                      gLpGaddly +qFeql+ qgny+eAak+Aa+sp+g+LRtp+tI+rfk++ + +gqls++lqYFg+L
       KKY15057.1 354 GLPGADDLYRNQFEQLMGQGNYAEAAKLAANSPRGFLRTPDTINRFKNAGQGTGQLSVILQYFGML 419
                      8****************************************************************8 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.3
  Clathrin_H_link   16 llaqgnykeAakvAaes 32  
                       l+  ++y++A+++A ++
       KKY15057.1 1231 LVHLEDYQAAVECARRA 1247
                       566789******99765 PP

>> Clathrin-link  Clathrin, heavy-chain linker
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   1.5e-07   0.00021       1      24 []     329     352 ..     329     352 .. 0.99

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.5e-07
  Clathrin-link   1 EdnIIPYIlntLnNpdLALrlAsR 24 
                    E++I+PY l++  N +LA++lAsR
     KKY15057.1 329 ENTIVPYLLQNPANSGLAVKLASR 352
                    9**********************9 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       1.8   2.5e+03       8      24 ..     366     382 ..     360     386 .. 0.82
   2 ?    0.1   0.0       1.5     2e+03       9      42 ..     550     584 ..     546     586 .. 0.83
   3 ?   -2.1   0.0       7.4     1e+04      22      36 ..     620     634 ..     619     640 .. 0.73
   4 ?   -1.8   0.0       6.1   8.5e+03       1      26 [.     724     749 ..     724     750 .. 0.89
   5 ?    0.6   0.0         1   1.4e+03       8      28 ..     992    1012 ..     989    1018 .. 0.88
   6 ?    0.2   0.0       1.4   1.9e+03       8      27 ..    1056    1075 ..    1054    1085 .. 0.80
   7 ?    1.1   0.1      0.68   9.4e+02      11      43 ..    1144    1179 ..    1139    1184 .. 0.73
   8 ?    6.5   0.0     0.013        18       4      27 ..    1224    1247 ..    1222    1259 .. 0.91
   9 ?    6.8   0.1     0.011        15       2      29 ..    1281    1308 ..    1280    1321 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.8
      TPR_14   8 aeallalGdpdeAiall 24 
                  e l+ +G+++eA++l+
  KKY15057.1 366 FEQLMGQGNYAEAAKLA 382
                 578999********986 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.5
      TPR_14   9 eallalGdpdeAiallrralala.Pddaeawllla 42 
                 +++l +   ++A a l +al+++ P++ +++++l 
  KKY15057.1 550 DIFLSQNMIQQATAFLLDALKDNkPEQGQLQTRLL 584
                 5678889999***********98689989998886 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 7.4
      TPR_14  22 allrralalaPddae 36 
                 +l++ral+   d+a+
  KKY15057.1 620 QLYQRALENTDDPAV 634
                 799****96655555 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 6.1
      TPR_14   1 peallalaeallalGdpdeAiallrr 26 
                 p++++++ ea  + G+  e ++++r+
  KKY15057.1 724 PDVHYKYIEAATTMGQMTEVERICRD 749
                 57899*************99999987 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 1
      TPR_14    8 aeallalGdpdeAiallrral 28  
                  ++a+l+++ p+e i+ll++++
  KKY15057.1  992 VKAFLEADMPAELIELLEKII 1012
                  6899**************985 PP

  == domain 6  score: 0.2 bits;  conditional E-value: 1.4
      TPR_14    8 aeallalGdpdeAiallrra 27  
                  a  +  +G ++eA+++++++
  KKY15057.1 1056 ANMCIDQGLYEEALEIYKKV 1075
                  667789999******99987 PP

  == domain 7  score: 1.1 bits;  conditional E-value: 0.68
      TPR_14   11 llalGdpdeAiallrrala..laPddaeaw.lllaq 43  
                    ++G+ ++ +++l+ a +  + P+ ++a+ + +a+
  KKY15057.1 1144 ATHAGKDEDLVKYLKMARRtqREPAVDTALaFCYAR 1179
                  5689999999******97732467765544477776 PP

  == domain 8  score: 6.5 bits;  conditional E-value: 0.013
      TPR_14    4 llalaeallalGdpdeAiallrra 27  
                  +++la  l +l+d+++A++++rra
  KKY15057.1 1224 WAKLATTLVHLEDYQAAVECARRA 1247
                  99*********************9 PP

  == domain 9  score: 6.8 bits;  conditional E-value: 0.011
      TPR_14    2 eallalaeallalGdpdeAiallrrala 29  
                  e l++l++ +++ G ++e i ll++ l 
  KKY15057.1 1281 EELQDLVKQYEREGYFEELISLLEAGLG 1308
                  6789*********************985 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.7   6.4e+03      12      21 ..     372     381 ..     368     381 .. 0.87
   2 ?   -0.6   0.0       1.3   1.7e+03      20      33 ..     620     633 ..     619     636 .. 0.81
   3 ?   -2.2   0.0       4.1   5.6e+03       2      13 ..     876     887 ..     875     889 .. 0.85
   4 !    9.5   0.0   0.00078       1.1       5      24 ..    1055    1074 ..    1053    1085 .. 0.92
   5 ?    3.7   0.0     0.055        77       5      24 ..    1227    1246 ..    1224    1252 .. 0.88
   6 ?    5.7   0.0     0.012        17       9      28 ..    1290    1307 ..    1288    1323 .. 0.87
   7 ?   -0.4   0.1       1.1   1.5e+03       6      21 ..    1512    1527 ..    1511    1539 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.7
       TPR_7  12 lGdyeeAiel 21 
                 +G+y+eA++l
  KKY15057.1 372 QGNYAEAAKL 381
                 8******975 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.3
       TPR_7  20 elyeqsLaltkdpe 33 
                 +ly+++L+ t+dp 
  KKY15057.1 620 QLYQRALENTDDPA 633
                 79***999999986 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 4.1
       TPR_7   2 LlnLarlysrlG 13 
                 +++La +y + +
  KKY15057.1 876 YNALAKIYIDSN 887
                 89******9876 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 0.00078
       TPR_7    5 LarlysrlGdyeeAielyeq 24  
                  +a+++ ++G yeeA+e+y++
  KKY15057.1 1055 IANMCIDQGLYEEALEIYKK 1074
                  799***************98 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.055
       TPR_7    5 LarlysrlGdyeeAielyeq 24  
                  La + + l dy+ A+e+ ++
  KKY15057.1 1227 LATTLVHLEDYQAAVECARR 1246
                  9999************9877 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.012
       TPR_7    9 ysrlGdyeeAielyeqsLal 28  
                  y+r+G++ee+i+l+e+  +l
  KKY15057.1 1290 YEREGYFEELISLLEA--GL 1307
                  89*************9..54 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 1.1
       TPR_7    6 arlysrlGdyeeAiel 21  
                  a++y++  ++e+ i l
  KKY15057.1 1512 AQIYRKNKRWEKSIAL 1527
                  89**********9987 PP

>> Vps39_1  Vacuolar sorting protein 39 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.49   6.8e+02      14      54 ..     740     795 ..     734     813 .. 0.73
   2 ?    1.8   0.0       0.2   2.8e+02      32      69 ..    1055    1093 ..    1028    1109 .. 0.74
   3 !    8.2   0.0    0.0021       2.8       1      43 [.    1169    1212 ..    1169    1251 .. 0.82
   4 ?    1.6   0.0      0.23   3.2e+02      37      75 ..    1353    1393 ..    1323    1408 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.49
     Vps39_1  14 pklvgpLlrleNaCdlkdveeiL...............kkekkykeLidlYygkkl 54 
                  ++v  ++r +N+ ++++v+++L                + + +k+L+ + y++++
  KKY15057.1 740 MTEVERICRDSNHYNPEKVKNFLiearlteqlpliivcDRFNFVKDLVTYLYRNQQ 795
                 56788899999999999999999666666666666666666677777776666554 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.2
     Vps39_1   32 veeiLkkekkykeLidlYygkklheeALeLlkelade.d 69  
                  + ++   +  y+e ++ Y++ ++h++A ++l++ + + d
  KKY15057.1 1055 IANMCIDQGLYEEALEIYKKVENHSAAANVLVDHIVSiD 1093
                  555555677899999*************99998777433 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0021
     Vps39_1    1 iDTaLlkvYlkt.kpklvgpLlrleNaCdlkdveeiLkkekkyk 43  
                  +DTaL  +Y+++ +  ++ ++lr +N  d++ +     +e  ++
  KKY15057.1 1169 VDTALAFCYARLdQLPELEDFLRSPNVADVEASGDKAYEEGFHQ 1212
                  8***********8899**************99877666555555 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.23
     Vps39_1   37 kkekkykeLidlY.ygkklheeALeLlkelade.deedeed 75  
                  ++++ + eLi lY +  + +++AL ++++ ad+ ++++ +d
  KKY15057.1 1353 EEAHLWPELIFLYcHFDEWDNAALAMMERSADAwEHHSFKD 1393
                  78999********45578899*********99854444444 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1         2   2.8e+03       3      14 ..     875     886 ..     874     888 .. 0.85
   2 ?    6.3   0.2    0.0096        13       7      27 ..    1055    1075 ..    1054    1077 .. 0.91
   3 ?    9.3   0.0     0.001       1.4       3      29 ..    1223    1249 ..    1221    1251 .. 0.90
   4 ?   -2.6   0.0       6.8   9.4e+03      11      33 ..    1290    1312 ..    1290    1313 .. 0.83
   5 ?   -3.1   0.0        10   1.4e+04       8      22 ..    1512    1526 ..    1510    1528 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2
                 HHHHHHHHHHHT CS
       TPR_8   3 ayynlgsiylkl 14 
                 +y+ l++iy++ 
  KKY15057.1 875 IYNALAKIYIDS 886
                 79*******986 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0096
                  HHHHHHHTT-HHHHHHHHHHH CS
       TPR_8    7 lgsiylklgdyeeAkeyyeka 27  
                  +++ ++++g yeeA e y+k+
  KKY15057.1 1055 IANMCIDQGLYEEALEIYKKV 1075
                  788999*************96 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.001
                  HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8    3 ayynlgsiylklgdyeeAkeyyekale 29  
                   + +l+ ++  l+dy++A+e+ ++a +
  KKY15057.1 1223 NWAKLATTLVHLEDYQAAVECARRANS 1249
                  599********************9965 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 6.8
                  HHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   11 ylklgdyeeAkeyyekaleldpd 33  
                  y+  g +ee ++ +e  l l+++
  KKY15057.1 1290 YEREGYFEELISLLEAGLGLERA 1312
                  78889999999999999988876 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 10
                  HHHHHHTT-HHHHHH CS
       TPR_8    8 gsiylklgdyeeAke 22  
                  ++iy+k ++ e++++
  KKY15057.1 1512 AQIYRKNKRWEKSIA 1526
                  89**99999888775 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1         2   2.8e+03      12      22 ..     370     380 ..     369     381 .. 0.82
   2 ?   -3.4   0.1       7.8   1.1e+04      23      29 ..     621     627 ..     620     627 .. 0.82
   3 ?    8.7   0.2    0.0011       1.5       7      27 ..    1055    1075 ..    1054    1075 .. 0.93
   4 ?    6.1   0.0    0.0076        11       4      27 ..    1224    1247 ..    1224    1247 .. 0.91
   5 ?   -0.0   0.0      0.65   8.9e+02       8      22 ..    1512    1526 ..    1512    1527 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2
                 HHTT-HHHHHH CS
       TPR_1  12 fklgkydeAle 22 
                 + +g+y eA +
  KKY15057.1 370 MGQGNYAEAAK 380
                 679******75 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.8
                 HHHHHHH CS
       TPR_1  23 yyekALe 29 
                  y++ALe
  KKY15057.1 621 LYQRALE 627
                 6999997 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0011
                  HHHHHHHTT-HHHHHHHHHHH CS
       TPR_1    7 lGnayfklgkydeAleyyekA 27  
                  ++n++  +g y+eAle y+k+
  KKY15057.1 1055 IANMCIDQGLYEEALEIYKKV 1075
                  7999***************95 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0076
                  HHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1    4 lynlGnayfklgkydeAleyyekA 27  
                  +  l+ ++ +l++y+ A+e+ ++A
  KKY15057.1 1224 WAKLATTLVHLEDYQAAVECARRA 1247
                  677999999***********9998 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.65
                  HHHHHHTT-HHHHHH CS
       TPR_1    8 GnayfklgkydeAle 22  
                  +++y+k++++++ ++
  KKY15057.1 1512 AQIYRKNKRWEKSIA 1526
                  689********9885 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       4.4   6.1e+03      15      25 ..     371     381 ..     367     385 .. 0.69
   2 ?   -2.2   0.0       3.8   5.2e+03      44      71 ..     454     480 ..     449     480 .. 0.75
   3 ?    8.7   0.1    0.0016       2.2       8      29 ..    1054    1075 ..    1050    1087 .. 0.74
   4 ?   -2.7   0.0       5.5   7.5e+03       8      24 ..    1172    1188 ..    1168    1191 .. 0.77
   5 ?    4.5   0.0     0.031        43       8      29 ..    1226    1247 ..    1219    1250 .. 0.73
   6 ?    2.7   0.1      0.11   1.6e+02      29      69 ..    1492    1529 ..    1490    1530 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.4
      TPR_12  15 rlgrydeAlel 25 
                  +g+y+eA +l
  KKY15057.1 371 GQGNYAEAAKL 381
                 57888888666 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.8
      TPR_12  44 tattlrnLgrlyralgryeeAlelleea 71 
                  +++   Lg++ ra  + e Al+++ +a
  KKY15057.1 454 KLECSEELGDIVRAH-DIELALAIYLKA 480
                 566777888897555.999999998776 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0016
      TPR_12    8 nlaavlrrlgrydeAlelleka 29  
                  ++a+++  +g y+eAle+++k+
  KKY15057.1 1054 EIANMCIDQGLYEEALEIYKKV 1075
                  5788888888888888888775 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 5.5
      TPR_12    8 nlaavlrrlgrydeAle 24  
                   la +++rl ++ e ++
  KKY15057.1 1172 ALAFCYARLDQLPELED 1188
                  6999***9999988665 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.031
      TPR_12    8 nlaavlrrlgrydeAlelleka 29  
                  +la++l +l++y+ A e+ ++a
  KKY15057.1 1226 KLATTLVHLEDYQAAVECARRA 1247
                  5888888888888888887776 PP

  == domain 6  score: 2.7 bits;  conditional E-value: 0.11
      TPR_12   29 aleiarrllGpdhpltattlrnLgrlyralgryeeAlelle 69  
                  a+e+a+rl  ++h +++  ++  +++yr+ +r+e+ ++l +
  KKY15057.1 1492 AVELAQRL--EKH-ELIFFRQIAAQIYRKNKRWEKSIALSK 1529
                  77888888..777.777888888888888888888877655 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.23   3.2e+02       1      15 [.     369     383 ..     369     387 .. 0.86
   2 ?   -0.2   0.1       1.1   1.5e+03      33      60 ..     550     576 ..     547     583 .. 0.75
   3 ?    1.0   0.0      0.44     6e+02      21      49 ..     720     748 ..     702     758 .. 0.75
   4 ?    2.0   0.1      0.22   3.1e+02      12      40 ..     860     888 ..     859     891 .. 0.86
   5 ?    5.0   0.0     0.025        35       2      28 ..    1060    1083 ..    1056    1088 .. 0.80
   6 ?   -3.0   0.1         8   1.1e+04      30      47 ..    1226    1243 ..    1224    1247 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.23
      TPR_19   1 llaegdyaeAlalle 15 
                 l+ +g+yaeA++l +
  KKY15057.1 369 LMGQGNYAEAAKLAA 383
                 789********9976 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.1
      TPR_19  33 eallalgqldeAealLdalpeedpddar 60 
                 ++ l+++ +++A a L +++++++  ++
  KKY15057.1 550 DIFLSQNMIQQATAFLLDALKDNKP-EQ 576
                 6678899999999999988888877.44 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.44
      TPR_19  21 dpknaearllLAeallalgqldeAealLd 49 
                   +++++ + ++ea   +gq +e e+++ 
  KKY15057.1 720 LSEDPDVHYKYIEAATTMGQMTEVERICR 748
                 5679******************9888875 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.22
      TPR_19  12 alleqalqedpknaearllLAeallalgq 40 
                 ++le+ l++  +++++  +LA++++ +++
  KKY15057.1 860 PFLEASLAAGHQQQAIYNALAKIYIDSNH 888
                 689999999999999999*******9885 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.025
      TPR_19    2 laegdyaeAlalleqalqedpknaear 28  
                  +++g y+eAl++++++   ++++a+a 
  KKY15057.1 1060 IDQGLYEEALEIYKKV---ENHSAAAN 1083
                  5799999999999998...77777765 PP

  == domain 6  score: -3.0 bits;  conditional E-value: 8
      TPR_19   30 lLAeallalgqldeAeal 47  
                   LA  l+ l ++++A ++
  KKY15057.1 1226 KLATTLVHLEDYQAAVEC 1243
                  578889999999999876 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1         1   1.4e+03      14      25 ..     371     382 ..     369     384 .. 0.84
   2 ?    5.4   0.0     0.013        18      24      35 ..    1064    1075 ..    1054    1079 .. 0.62
   3 ?    1.3   0.1      0.24   3.3e+02       8      28 ..    1227    1247 ..    1225    1251 .. 0.83
   4 ?   -2.8   0.1       4.7   6.5e+03      20      33 ..    1374    1387 ..    1373    1388 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1
      TPR_10  14 qrgrydeAeall 25 
                  +g+y+eA +l+
  KKY15057.1 371 GQGNYAEAAKLA 382
                 69******9985 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.013
      TPR_10   24 lleealairrrl 35  
                  l+eeal+i++++
  KKY15057.1 1064 LYEEALEIYKKV 1075
                  566666666665 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.24
      TPR_10    8 LanalrqrgrydeAealleea 28  
                  La +l ++ +y++A++ +++a
  KKY15057.1 1227 LATTLVHLEDYQAAVECARRA 1247
                  788888888889888888876 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 4.7
      TPR_10   20 eAealleealairr 33  
                  +A+a++e++ ++++
  KKY15057.1 1374 AALAMMERSADAWE 1387
                  7999***9999887 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.4     0.034        47      90     174 ..      45     131 ..      29     157 .. 0.79
   2 ?   -1.4   0.1      0.65     9e+02     121     162 ..     273     314 ..     260     339 .. 0.64
   3 ?    1.6   0.1     0.081   1.1e+02     335     378 ..    1091    1134 ..    1046    1167 .. 0.85
   4 ?    6.2   0.2    0.0032       4.4     333     371 ..    1234    1272 ..    1210    1286 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.034
                    XXXX.XXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD  90 svkifknfkekktksikleyqvdkifg...GalLgvkseg.svsfYDweqgklvrridvkkvknVvwsd.dgelvalvskdtvyilsynl 174
                    +v+i  n+k+++ + i  + ++d+ +      ++ +k +g ++ ++D+  ++ +++ ++++   V+w+  + + + lv++++vy  +   
     KKY15057.1  45 TVVI-VNLKNQN-EVIRRPINADSAIMhwsKLVIALKAQGkTIQIFDLGAKQKLKSANMNE-DIVFWKWySDTSIGLVTESSVYHWNVFD 131
                    6777.8999888.88999999987666695455556665568*******************.99999852578999******99887544 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.65
                    XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD 121 gvksegsvsfYDweqgklvrridvkkvknVvwsddgelvalv 162
                    ++++ g++++YD+e+g+ +   ++++ +  + s d e + +v
     KKY15057.1 273 MITKYGFIHLYDLETGTCIFMNRISSETIFITSSDSESAGIV 314
                    566777888888888887766666652333445555555555 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.081
                     -HHHHHHHHHHH--HHHHHHHHHHHHHTT-HHHHHHHHHHTT-H CS
  Coatomer_WDAD  335 nLelAlelakelddeekWkkLgdaAlsqgniklaeeayqkakdf 378 
                      ++ A + a++ d +e+W+k+++a l   +++   e+y ka+d 
     KKY15057.1 1091 SIDRAQDYAEQVDLPEVWSKVAKAQLDGLRVTDSIESYIKANDP 1134
                     578999*********************99999999999999974 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0032
                     TT-HHHHHHHHHHH--HHHHHHHHHHHHHTT-HHHHHHH CS
  Coatomer_WDAD  333 lgnLelAlelakelddeekWkkLgdaAlsqgniklaeea 371 
                     l++ + A+e+a+++++ ++Wk++ +a +s+ ++ l + +
     KKY15057.1 1234 LEDYQAAVECARRANSVKVWKQVHEACVSKKEFRLSQIC 1272
                     667789***************************998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1029  (0.0573931); expected 358.6 (0.02)
Passed bias filter:                      684  (0.0381505); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.05u 0.34s 00:00:01.39 Elapsed: 00:00:00.54
# Mc/sec: 9251.84
//
Query:       KKY15058.1  [L=362]
Description: putative ammonium transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-71  241.2  19.8    1.8e-71  240.9  19.8    1.0  1  Ammonium_transp  Ammonium Transporter Family


Domain annotation for each model (and alignments):
>> Ammonium_transp  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.9  19.8     1e-75   1.8e-71      85     399 .]      22     337 ..       8     337 .. 0.94

  Alignments for each domain:
  == domain 1  score: 240.9 bits;  conditional E-value: 1e-75
                      HHHHHHHHHHHHHHHHHHHHHCTTTB-HHHHHHHHHHHHHHTHHHHHHHHHS.SSHHHHTT--.-SSSTTTTHHHHHHHHHHHHHHHS-STTTT CS
  Ammonium_transp  85 glfflfqlafaataitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvliDfAgstvVHlvggvagLaaalvlgkregrf 178
                        ++ fq++faa+++ +  g+   r++f a+++f  l++tl y++ a  +wg gg+l++lgvl D+ g+ v+H+ +g a++++ + +g+r +r 
       KKY15058.1  22 STMVYFQHVFAAITVVLLAGGYLGRMNFLAWMVFVPLWITLCYVVGAFSIWG-GGFLYNLGVL-DYSGGYVIHVSSGTAAFVGSYWIGPRLERD 113
                      34599***********************************************.**********.***************************997 PP

                      GTTTSS--GSBHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHH.HHHHHHHHHHHHHHHHHHHHHHHCSS-BHHHHHHHHHHHHHHHTTTTTTS CS
  Ammonium_transp 179 egkeeaikghnlpfavlGtllLwfgWfgFNaGsaltankrararaavtTllAaaagaltallisrlkegkinvlglanGilAGlVAiTaacavv 272
                          +++++ n+ +a++G+ +Lw  W gFN+G  ++a++ a a a+++T++ +a++ lt++ ++++  +k++v+g++ G++ GlV+iT+a+++v
       KKY15058.1 114 ---RKNFQPNNIVLALVGAGILWTCWNGFNGGDPYAASPDAGA-AVLNTNICTAMSLLTWMCLDYFFFKKPSVIGAIQGMITGLVSITPAAGFV 203
                      ...9***************************************.************************************************** PP

                      -HHHHHHHHHHHHHHHHHHHH...HHHHHHTC-CTTHHHHHHHHHHHHHHHHHHHHTSHHHC...SSHSSTTGGGT-CHHHHHHHHHHHHHHHH CS
  Ammonium_transp 273 epwgAliiGlvAgvlsvlgvk...klkeklkidDsldvvavHgvgGiwGllavgifaaekvv...askisggllsgegkqlvvqligilvilay 360
                        wgA+iiGl +g +  ++++   k k  l +dD+l+v+  H v+G++G++++g+fa+ +     a  + gg ++g+g+q++vq++g+l+i+++
       KKY15058.1 204 AGWGAIIIGLCSGSIPWVTLNmakKTKIFLLFDDTLEVFHTHCVAGVLGGFLTGLFATAEGCaafALTTPGGAIEGNGRQVWVQIVGALFIIGW 297
                      **************999999854556666778**************************98778988888999********************** PP

                      HHHHHHHHHHHHHHHTT..SB--HHHHHHSHHHHHHSSSSB CS
  Ammonium_transp 361 afvvtlilllllklllg..LrvseeeeevglDvaehgetay 399
                        v t ++ll +k++l   Lr+++e+ e+g+D + hge+ay
       KKY15058.1 298 DGVWTSLILLFIKYVLRipLRMTDEQLEIGDDAI-HGEEAY 337
                      ***************99899**999999999988.***998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 2202.48
//
Query:       KKY15059.1  [L=854]
Description: putative sensor histidine kinase response regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.4e-24   84.1   0.0    1.7e-23   83.2   0.0    1.5  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    5.3e-19   68.4   0.1    2.2e-12   47.2   0.0    2.7  2  Response_reg  Response regulator receiver domain
  ------ inclusion threshold ------
       0.11   12.8   0.4       0.26   11.6   0.4    1.6  1  TBCA          Tubulin binding cofactor A
       0.16   11.8   0.0        0.8    9.5   0.0    1.9  2  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik
       0.19   11.7   0.0       0.39   10.6   0.0    1.5  1  HATPase_c_5   GHKL domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   4.8e-27   1.7e-23       2     110 ..     463     577 ..     462     579 .. 0.94

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 4.8e-27
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEE..TEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEE... CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveikase..ddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwv... 94 
                 de+ L +++s  v Na+kf t+ g+i+++ ++s     +visv+D+GiGip++ l++lf++fs+ ddst+r+++g GlGl ++k l++++gG+i++   
  KKY15059.1 463 DERDLSKLLSCTVLNAIKF-TERGSITITAEVSAsnRSVVISVSDTGIGIPRDFLPQLFKPFSReDDSTTRTKEGLGLGLLVAKGLARKIGGDIQCirs 560
                 8999***************.********9999444489**********************************************************888 PP

                 .EEETTTEEEEEEEEES CS
   HATPase_c  95 .esepgrGttftftlpl 110
                  +s p++Gt+f +++pl
  KKY15059.1 561 eTSGPNHGTEFEIRVPL 577
                 777779*******9997 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.9e-07    0.0018       2      41 ..     691     730 ..     690     732 .. 0.96
   2 !   47.2   0.0     6e-16   2.2e-12      41     111 ..     758     840 ..     748     841 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.9e-07
                   EEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH CS
  Response_reg   2 livdDdplvrellrqlleeegyeevaeaedgkealellke 41 
                   l+++D++++r+ll ++l + gy++v ea dgkea++++ke
    KKY15059.1 691 LVAEDNKINRKLLVTMLGKLGYKDVYEAFDGKEAVRIMKE 730
                   89**********************************9986 PP

  == domain 2  score: 47.2 bits;  conditional E-value: 6e-16
                   HHHESEEEEESSCSSSEHHHHHHHHHHCT............TTSEEEEEESSTSHHHHHHHHHCTESEEEESSG-HHHHHHHH CS
  Response_reg  41 eekvdlillDinmpgmdGlellkeireed............pelpviiltahseeedavealkagaddflsKpfdpeeLlkal 111
                   ++ vd+il+D+ mp+mdG+e++++i e              p + ++++ta +++e + +a + g+++f++Kp++ ++L k +
    KKY15059.1 758 RKPVDVILMDLWMPEMDGYEATEKILELAqrhgdgtpktrlPVPTILAVTADATDEALLRATQTGMEGFMTKPYKLNDLQKLI 840
                   5679********************9665544456665555445889*********************************9987 PP

>> TBCA  Tubulin binding cofactor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   7.3e-05      0.26       7      60 ..     212     269 ..     208     275 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.3e-05
        TBCA   7 vvkRlvKEeasYekEleeqearleklka...dgded.eydlkkqeevleetkamipdl 60 
                 ++ RlvK e++ +kE  +  +++ek+k+   +++   + +lk  ++++e + +++   
  KKY15059.1 212 IMDRLVKGESFARKENVDLPEKVEKVKNvipKEAVTsNQSLKPSRRAVEAADNVVHAY 269
                 689*************************999444444889999999999998888765 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.59   2.1e+03      84     110 ..     428     455 ..     426     471 .. 0.78
   2 ?    9.5   0.0   0.00022       0.8      19      77 ..     484     539 ..     474     548 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.59
  HATPase_c_3  84 lgkkltvitkke.gesstltldvdkidk 110
                  lg++++v ++++ ge s  t+ +++ ++
   KKY15059.1 428 LGESIEVRSRSSsGEASSKTIIWSVAKE 455
                  7999*****8654888999999987665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00022
  HATPase_c_3  19 aenvkievnknr.gktgeivieDdGkGmseeelknalrlatsskeakrkstslGkkGiGl 77 
                    +++i+++    + +  i++ D G G++++ l + +++ + + +    st++ k G+Gl
   KKY15059.1 484 RGSITITAEVSAsNRSVVISVSDTGIGIPRDFLPQLFKPFSREDD----STTRTKEGLGL 539
                  556777777554356689***************9****9888888....56666777664 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00011      0.39       2      87 ..     463     557 ..     462     563 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
  HATPase_c_5   2 kdldlcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg............ekkklesskskkeehGiGlksireivkkykgnlsi 87 
                  ++ dl+ +l+    NAi   ++ +     I+ +v+ +++s++is++ +  g             +++  s++++ke  G+Gl   + +++k +g++++
   KKY15059.1 463 DERDLSKLLSCTVLNAIKFTERGS---ITITAEVSASNRSVVISVSDTGIGiprdflpqlfkpFSREDDSTTRTKEGLGLGLLVAKGLARKIGGDIQC 557
                  578999999999999999888866...6899999999***********888777777755543226677889999*****************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 5360.63
//
Query:       KKY15060.1  [L=427]
Description: putative acetylornithine deacetylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-20   71.1   0.1    1.1e-19   70.3   0.1    1.4  1  M20_dimer      Peptidase dimerisation domain
    3.8e-17   62.7   0.1    2.7e-16   59.9   0.1    2.0  1  Peptidase_M20  Peptidase family M20/M25/M40
  ------ inclusion threshold ------
      0.089   12.5   0.0       0.26   10.9   0.0    1.7  1  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.1   1.9e-23   1.1e-19       1     108 [.     234     346 ..     234     347 .. 0.94

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 1.9e-23
                 SEB-EEEEEEEEEE-B-EEGG-TTTTB-HHH......HHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHH CS
   M20_dimer   1 ighkGlaggkitvkgkagHsgapgagaNAie......klarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeev 93 
                 +ghkG++  +it+kgka+Hsg+p  g++A+       + ++ l ++++e+g    ++  + tt+n++ +egG a+nv+p+ea++k+ +R l g ++e++
  KKY15060.1 234 TGHKGILMTTITAKGKAAHSGYPWLGRSANSmiipalAIMDQLGSIPEEDGGLPSSEKYGNTTVNLGLLEGGVAANVVPEEATVKVALR-LAGGTREKA 331
                 69*****************************99999999999999999999988***********************************.66789999* PP

                 HHHHHHHHTSCCSTT CS
   M20_dimer  94 leeieeilekeaped 108
                 +e i+++l+++++++
  KKY15060.1 332 IEIIKKALADLGEHY 346
                 ******999988876 PP

>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.1   4.5e-20   2.7e-16       2     206 ..     124     423 ..     123     424 .. 0.78

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 4.5e-20
                    EEEES-BSS..TTCGGGSSSTTSEE...........ETTT.EEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH CS
                    xxxxxxxxx..xxxxxxxxxxxxxx...........xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20   2 lgsHlDvVp..eeetdgwttpfslt...........eedG.klyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle 83 
                    + sH+D+Vp     +                     ++d+ ++ GrG++d kg v+a ++a+  l d+   ++ ++ llf++ EE +++G++ + e
     KKY15060.1 124 VTSHIDTVPpfIPYN--L------SypstddsastfTRDDiVISGRGSVDAKGCVAAQVHAVLDLLDSESIKPNEVALLFVVGEEQSGDGMRTFSE 211
                    689******632222..2......133222245557666689*************************999999************877******** PP

                    HHHTTTCESEEEEEEEESSSBTCHSTETEEEE................................................................ CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................................ RF
  Peptidase_M20  84 gleerekvdavfelhieepgileagklaigvv................................................................ 115
                    +    ++   + +++ +ep+ l+  +   g +                                                                
     KKY15060.1 212 S---PHNSGKYNAVIFGEPTELKLAT---GHKgilmttitakgkaahsgypwlgrsansmiipalaimdqlgsipeedgglpssekygnttvnlgl 301
                    5...445555666889*******555...33344577999******************************************************** PP

                    ...........................................EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSCEEEEEESSSBHTHHHH.. CS
                    ...........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
  Peptidase_M20 116 ...........................................kvevelleggapvtlndsplvkalaeaaeelfgekvelivsgpggtdarff.. 166
                                                               ++e+++ +g+ p  ++        a    ++ g   e+++   +gtd++ +  
     KKY15060.1 302 leggvaanvvpeeatvkvalrlaggtrekaieiikkaladlgeHYEITFSQGYGPIDID--------A----DVSG--FETVTVN-YGTDIPNLev 382
                    *******9999999887777777777777666665444444433444433444444444........2....2235..4455566.9999999965 PP

                    TTTEEE.EEEESSG.GCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    xxxxxx.xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 167 agiptv.mifgpgs.glaHspnEyvdledlekgikvlarlle 206
                    +g     +++gpg    aHs +E + + d+e++++ +++l++
     KKY15060.1 383 NGS-VKrYLYGPGTiTVAHSDHEALTIGDMEDALEGYKQLIL 423
                    444.33456****77***********************9986 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.4e-05      0.26      15      93 ..     122     221 ..     106     226 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.4e-05
                    EEEEEE--B-TTT..................TCC...T---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHHHHHHHC.CC CS
  Peptidase_M28  15 lllgAHyDsvgvg..................rgp...ifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEagllGSkafakakp.el 88 
                     ++++H+D+v+                    r++      G  D   +vaa +  +  l +s+s   ++v +lf+ +EE++  G + f  ++p ++
     KKY15060.1 122 TIVTSHIDTVPPFipynlsypstddsastftRDDiviSGRGSVDAKGCVAAQVHAVLDLLDSESIKPNEVALLFVVGEEQSGDGMRTFS-ESPhNS 216
                    58999****9977999999999999888887333544456999999999999888888888776669*****************99999.544355 PP

                    TTEEE CS
  Peptidase_M28  89 kkiaa 93 
                     k++a
     KKY15060.1 217 GKYNA 221
                    55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2659.39
//
Query:       KKY15061.1  [L=511]
Description: putative translation initiation factor ef-2 gamma [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-34  118.3   0.3    2.9e-34  117.1   0.3    1.7  1  eIF2_C       Initiation factor eIF2 gamma, C terminal
    1.3e-22   80.3   0.2    7.4e-22   77.8   0.2    2.0  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    3.6e-12   46.5   0.5    7.7e-12   45.4   0.5    1.6  1  GTP_EFTU_D2  Elongation factor Tu domain 2
     0.0029   17.5   0.1       0.03   14.2   0.0    2.1  2  RsgA_GTPase  RsgA GTPase
     0.0031   17.6   0.0      0.006   16.6   0.0    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
       0.14   12.2   0.0       0.51   10.4   0.0    1.9  3  Dynamin_N    Dynamin family


Domain annotation for each model (and alignments):
>> eIF2_C  Initiation factor eIF2 gamma, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.1   0.3   9.9e-38   2.9e-34       2      86 .]     412     500 ..     411     500 .. 0.95

  Alignments for each domain:
  == domain 1  score: 117.1 bits;  conditional E-value: 9.9e-38
                 EEEEEEEE-SBESSSSSC..CC..-----TTEEEEEEETTEEEEEEEEEEESSEEEEEEEEEEE-STTEEEEEEEEETTSEEEEEEEEE CS
      eIF2_C   2 eleieyellerlvgvkee..kk..veklkkkEvLmlniGsastggvvtsvkkdeakvkLkkPvcaekgekialsRrvekrWrLiGwGei 86 
                 ele++y+ll+rl+gvk+   k+  v+kl+k+EvLm+niGs++tg++v+ vk d ak++L++P+c+e+gekialsRr+ek+WrLiGw++i
  KKY15061.1 412 ELEVNYFLLRRLLGVKTAdgKQakVAKLSKNEVLMVNIGSTATGAKVMGVKADAAKLSLTSPACTEIGEKIALSRRIEKHWRLIGWANI 500
                 79**************99762256**************************************************************987 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.2   2.5e-25   7.4e-22       3     193 ..      83     286 ..      81     287 .. 0.83

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 2.5e-25
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE...................................TT CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle...................................ke 66 
                 ++nig+ighv hGK+T++ ++                     + k+E er iTik   ++ +                                   + 
  KKY15061.1  83 TINIGTIGHVAHGKSTVVKAISGVQTV---------------RFKNELERNITIKLGYANAKiykcdndecprptcyrsfksekevdppcerdgctgRY 166
                 68*****************99844444...............345566666666665555555566666666666666666666677****99987667 PP

                 CSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.STHHHHHHHHHHHHTTTE.EEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
    GTP_EFTU  67 tkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG.vepqteevlrlalkegvp.iivfiNKmDrlkaelkeiveevkqklsrkeeklekygek 163
                    ++++++D+PGH   ++++  g++v+D a+l+++ +e  ++pqt e+l  +  ++++ ii++ NK+D +++e   +  e   k+      ++  +++
  KKY15061.1 167 RLLRHVSFVDCPGHDILMSTMLSGAAVMDAALLLIAGNETcPQPQTSEHLAAIEIMKLKhIIILQNKVDLMREEGALQHYESILKF------IRGTVAD 259
                 8889**********************************9879*****************999999******888777777777688......9999999 PP

                 TTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 164 gekevpvvfgSalkgegvktllealvellp 193
                 g+   p++++Sa  + +++++ e+lv+++p
  KKY15061.1 260 GS---PIIPISAQLKYNIDAINEYLVTKIP 286
                 97...********************99987 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.5   2.6e-15   7.7e-12       1      73 [.     318     400 ..     318     401 .. 0.93

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 2.6e-15
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEE........EEEEEEEEEEETEEESEEETTSEEEEEEEESSCCS..GSSTTCEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskke........ivtrissletfhededeavaganaGvivaikgled..aiivGdtl 73 
                  G+va+g++ +G+lk Gde++i++   t k+e        i +ri sl+++h+d++ av+g+ +Gv+++++++ +  + +vG +l
   KKY15061.1 318 GGVAGGSILTGVLKLGDEIEIRPgIIT-KDEtgktichpIMSRIVSLFAEHNDLKFAVPGGLIGVGTRVDPTLCraDRLVGHVL 400
                  89*********************9999.6667***************************************9998877888777 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.15   4.5e+02     105     126 ..      89     110 ..      74     119 .. 0.77
   2 !   14.2   0.0   9.9e-06      0.03      13     101 ..     191     285 ..     167     289 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.15
                  ECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase 105 vGqSGvGKStLinallpelelk 126
                  +G+   GKSt+++a+ + ++++
   KKY15061.1  89 IGHVAHGKSTVVKAISGVQTVR 110
                  577778********99876655 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 9.9e-06
                  EES--EEEEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEE.E-GGG--HHH......HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSE CS
  RsgA_GTPase  13 vaNvdqllivvslkepelslnlldrfLvlaeekgiepvivl.nKiDlleeee......eleelkeelealgyevllvsaktkegleelkellkdkt 101
                  +a +d +l++++ + +++ + + +  L+++e  +++ +i+l nK+Dl+ ee       ++ ++   + a g +++ +sa+ k ++++++e+l  k+
   KKY15061.1 191 AAVMDAALLLIAGN-ETCPQPQTSEHLAAIEIMKLKHIIILqNKVDLMREEGalqhyeSILKFIRGTVADGSPIIPISAQLKYNIDAINEYLVTKI 285
                  78899999999999.666777778899*****99966655549********966633333333333445589999999999999999999998776 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     2e-06     0.006       2     112 ..      86     231 ..      85     233 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2e-06
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEE.....ETTEE.....................................EEEEECGGCS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvk.....lkgke.....................................ielvDtpGli 57 
                 ++ +G+   GKSt+++a++g  +++ +++    ++i+ g  +         +                                     + +vD+pG  
  KKY15061.1  86 IGTIGHVAHGKSTVVKAISGVqTVRFKNELERNITIKLGYANakiykC---DndecprptcyrsfksekevdppcerdgctgryrllrhVSFVDCPG-H 180
                 889*****************6567777777555555555444224321...13467778888888888889999999999999999999********.4 PP

                 SHHHHHHHHHHHHHHHHC.TSEEEEEEETTTTCSHHHH.HHHHHHHHHTTSEEEEEE CS
    MMR_HSR1  58 egaseekglgkaflalee.adlillvvdaseeklkpld.eeleelleeakkplilvl 112
                 +       l  ++l+    +d++ll++  +e+  +p+  e+l+++   + k +i++ 
  KKY15061.1 181 D------ILMSTMLSGAAvMDAALLLIAGNETCPQPQTsEHLAAIEIMKLKHIIILQ 231
                 4......57777777666469999999744222333330223333222445555555 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00017      0.51       1      30 [.      86     114 ..      86     153 .. 0.80
   2 ?   -2.9   0.0         2   6.1e+03     101     111 ..     170     180 ..     166     182 .. 0.83
   3 ?   -3.3   0.0       2.8   8.4e+03      83     108 ..     291     316 ..     265     318 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00017
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnp 30 
                 i  +G++ +GKS+v+ a+ g +  +r +n 
  KKY15061.1  86 IGTIGHVAHGKSTVVKAISGVQ-TVRFKNE 114
                 5679****************99.4444444 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2
                 -SEEEEE---B CS
   Dynamin_N 101 kgltlvDlPGl 111
                  ++++vD PG 
  KKY15061.1 170 RHVSFVDCPGH 180
                 5799******6 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.8
                 SSS--SS-EEEEEEETTS-SEEEEE- CS
   Dynamin_N  83 nkgiskkvillkilsllvkgltlvDl 108
                   + s ++i+++ ++ +++g ++ Dl
  KKY15061.1 291 DFQASPHMIVIRSFDVNKPGAEIEDL 316
                 44567779999999999999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 3287.93
//
Query:       KKY15062.1  [L=174]
Description: putative 60s ribosomal protein l11 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-22   78.5   0.0    4.7e-22   78.0   0.0    1.3  1  Ribosomal_L5_C  ribosomal L5P family C-terminus
    3.7e-20   72.0   0.0      1e-19   70.6   0.0    1.7  2  Ribosomal_L5    Ribosomal protein L5


Domain annotation for each model (and alignments):
>> Ribosomal_L5_C  ribosomal L5P family C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   0.0   5.3e-26   4.7e-22       1      94 []      66     164 ..      66     164 .. 0.88

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 5.3e-26
  Ribosomal_L5_C   1 piGvkvtLrgekmyefldkllevvlprlrdFkGiskssfdgrGnvsfGikeqiifpeieydkdkgifGmditivttak...tde.........ea 83 
                     +i+v+vt+rg+k++e++++ l+v++++lr      k++f+++Gn++fGi+e+i++ +i+yd+ +gi+Gmd++++++++   +++         ++
      KKY15062.1  66 KIAVHVTVRGPKAEEIIERGLKVKEYELR------KRNFSNTGNFGFGISEHIDL-GIKYDPAIGIYGMDFYCCMSRPgarVSRrrrckskvgKS 153
                     69***************************......********************.**********************66533356777777755 PP

  Ribosomal_L5_C  84 rallkelgipf 94 
                     +++++e++i++
      KKY15062.1 154 HQVTQEDTIKW 164
                     55777777776 PP

>> Ribosomal_L5  Ribosomal protein L5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   1.1e-23     1e-19       1      57 []       9      62 ..       9      62 .. 1.00
   2 ?   -2.2   0.0      0.61   5.4e+03       9      18 ..      65      74 ..      65      84 .. 0.75

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 1.1e-23
                  SCTTS-EEEEEEEEEE-SSSSSCHHHHHCCHHHHCCCHSS--EECC--TTCTTTCSC CS
  Ribosomal_L5  1 NvMqvPrleKivinmgvGeagedkkllekaakeLaeItGQkPvvtkakksianFkiR 57
                  N+M++ r++K+v+n+ vGe+g++   l++aak+L++++GQ+Pv +ka++++++F+iR
    KKY15062.1  9 NPMRELRIDKLVLNISVGESGDR---LTRAAKVLEQLSGQTPVYSKARYTVRTFGIR 62
                  9**********************...******************************9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.61
                  EEEEEEEE-S CS
  Ribosomal_L5  9 eKivinmgvG 18
                  eKi +++ v 
    KKY15062.1 65 EKIAVHVTVR 74
                  7999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1264.97
//
Query:       KKY15063.1  [L=222]
Description: putative small nuclear ribonucleoprotein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-20   71.2   0.1    5.2e-20   70.9   0.1    1.1  1  LSM       LSM domain


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.1   2.9e-24   5.2e-20       3      66 ..      10      93 ..       8      94 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 2.9e-24
                HHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTET....................EEEEEEEEEEEGGGEEEEE CS
         LSM  3 lkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkk....................ekrklglvliRGnnivlis 66
                +++lin+++++ l++gr+  G++ +fD++mN+vL d+ee+++ kk                    ekr lgl+++RG+niv+ s
  KKY15063.1 10 MQNLINYRMRITLNDGRQMTGQMLAFDKHMNIVLADTEEFRRIKKkqtkgnapgaagaaplvevdEKRTLGLIILRGTNIVSCS 93
                89******************************************9***********************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.33s 00:00:00.79 Elapsed: 00:00:00.49
# Mc/sec: 1360.10
//
Query:       KKY15064.1  [L=91]
Description: hypothetical protein UCRPC4_g06492 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-10   41.6   0.0    1.5e-10   41.2   0.0    1.2  1  MPC       Mitochondrial pyruvate carriers
  ------ inclusion threshold ------
       0.25   11.3   2.6       0.68    9.9   2.6    1.8  1  ApoC-I    Apolipoprotein C-I (ApoC-1)


Domain annotation for each model (and alignments):
>> MPC  Mitochondrial pyruvate carriers
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   1.7e-14   1.5e-10       5      44 ..      12      53 ..       8      62 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 1.7e-14
         MPC  5 flnsetgkk..tvhFWaPvlkwglviaglsDlkrpaekiSlt 44
                + +++++++  ++hFW+P++++g+++a+++D+k+++e + ++
  KKY15064.1 12 IRQNKALDYfcSTHFWGPASNFGIPLAAIADFKKDPEILGGR 53
                567788888889*************************99876 PP

>> ApoC-I  Apolipoprotein C-I (ApoC-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.6   7.5e-05      0.68      20      57 ..      55      90 ..      48      91 .] 0.87

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 7.5e-05
                HHHHHHHCCHCCCHCT..TSSSSCCHHHHHHHHHHHHHHS CS
      ApoC-I 20 ktledKaraaieeIkq..SelpaktrnWfsetfekvkekl 57
                k le+Ka+aa ++ k+  S+l++k      ++fekvkek+
  KKY15064.1 55 KSLEEKAKAAASSAKEgaSDLASKA----GKEFEKVKEKV 90
                679*********9996559****98....57999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.31s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 597.22
//
Query:       KKY15149.1  [L=233]
Description: putative tafazzin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 1486.09
//
Query:       KKY15150.1  [L=473]
Description: putative nadh-dependent flavin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-53  182.4   0.0    2.8e-50  171.5   0.0    2.3  2  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.5   0.0   1.6e-54   2.8e-50       2     232 ..      43     303 ..      42     310 .. 0.84
   2 !    8.7   0.0   5.2e-05      0.93     311     339 ..     432     460 ..     387     462 .. 0.84

  Alignments for each domain:
  == domain 1  score: 171.5 bits;  conditional E-value: 1.6e-54
                   CCS-EEETTEEESSSEEE----S-TTTTTCS.HH.HHHHHHH....HHHHHTT-SEEEEEEEESSCCC-SCTTSEE-S......SGGGHHHHHHHHH CS
  Oxidored_FMN   2 LFkPikignmtLknRivmapmtrlraldkgnvle.dlaaeyy....sqraeipvtliiteaafvnpksggfdnapgiw......deeqieewrklte 87 
                   LF+P++i ++tLknRi++apm++++++++++ +  +++ +y      + a ++ +l+i ea++v+ ++++++ + g+w      + eq ++++ +++
    KKY15150.1  43 LFQPLQIRSVTLKNRIMVAPMCQYSCEPNPSSPFvGALTDYHlvhlGHFALKGASLVIIEASAVQTNGRITPWDTGLWqfdqgtSSEQFKGLKRVVD 139
                   9****************************98765566666651111567999**************************5555555899********* PP

                   HHHHTT-EEEEEEE--GGGS....SCSTCEC...................SS.ESSSSSTTT-........S...CS.-EE--HHHHHHHHHHHHHH CS
  Oxidored_FMN  88 avhengskvvvqlwhlGreak..seyladqe.................vdspsdpvaldaqee.......esaeevy.kkeltkeeikqliqefveA 157
                     h +gskv++ql+h+Gr+a      la+q                  v++p                  + +   + ++el+ +e+++++ +f++ 
    KKY15150.1 140 FCHSQGSKVGIQLAHAGRKAStsPPWLATQAgvrsikadssvfgwpdnVVGPT---------GgdsqawsTDGIGYWpPRELSTSEVEEVVLAFQRS 227
                   *******************9743345666667888777777666655555555.........03333333344444579****************** PP

                   HHHHHHTT-SEEEEEE-CTSHHHHHH-TTT----STTSSSHHHHHHHHHHHHHHHHHHH-SSS.EEEEEECE--ST CS
  Oxidored_FMN 158 AkraieAgfDgVeihganGYLlnqFlspksnkrtDeygGslenRarFllevvdaVkeavgeer.vgyRlSpedvve 232
                   A++a++Ag D++eih+a+GYL++qFlsp +n+rtD+ygG++ nR+r l e+  a++ ++     ++ R+S+ +  e
    KKY15150.1 228 AELAVKAGVDVIEIHAAHGYLIHQFLSPVTNHRTDKYGGNYLNRIRILTEIATAIRSVIPDSTpLFLRISATEWLE 303
                   ************************************************************999*******988665 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 5.2e-05
                   HHTTS-SEEEESTHHHH-TTHHHHHHCCT CS
  Oxidored_FMN 311 vaegeadLvamgRefladpdlveklkkgl 339
                    ++ +ad+v +gR+fl++ ++v k++k+l
    KKY15150.1 432 EEQRKADVVLVGRQFLRESEWVMKVAKEL 460
                   345789*******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3089.11
//
Query:       KKY15151.1  [L=712]
Description: putative succinate:fumarate antiporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.7e-64  211.3   2.4    1.2e-21   76.4   0.1    3.4  3  Mito_carr      Mitochondrial carrier protein
     0.0017   17.9   0.0     0.0044   16.6   0.0    1.8  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.1   1.3e-25   1.2e-21       3      95 ..      15     108 ..      13     110 .. 0.93
   2 !   67.3   0.0   9.2e-23   8.3e-19       3      95 ..     113     210 ..     111     212 .. 0.89
   3 !   65.9   0.1   2.6e-22   2.3e-18       3      85 ..     220     302 ..     218     311 .. 0.95

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 1.3e-25
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS.HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa.ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                  +++ +l+aGg+ag++++lv++Pld++K+r+q++++ ++    ++ ++ + k+i++ e  +gly+Gl++ l +++p+ a++f++ye +k+ll +
  KKY15151.1  15 ATAATNLIAGGAAGMMEALVCHPLDTIKVRMQLSRRAQRPGAMKRgFIGTGKEIVQRETALGLYKGLGAVLSGIIPKMAIRFTSYEWYKQLLAD 108
                 57789****************************9999988776668*********************************************976 PP

  == domain 2  score: 67.3 bits;  conditional E-value: 9.2e-23
                 HHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHCCCSSTTTSCSS....HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   3 lsvlkellaGglagav.atlvttPldvvKtrlqtqkksskksksaa....ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 +s+ +++laG+ ag++ a+ v+tP++vvK+rlq+q++s ++    +    +++++ +i++eeG+ +l+rG++ + lr+  ++a++f++y  lk +l++
  KKY15151.1 113 VSAGSTFLAGLSAGVTeAVAVVTPMEVVKIRLQAQRHSLSDPLDVPkyrnAAHAMFTILREEGVGALWRGVSLTALRQGTNQAANFTAYTELKSFLQD 210
                 677889**********77889**************999665433335555********************************************9986 PP

  == domain 3  score: 65.9 bits;  conditional E-value: 2.6e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvl 85 
                 l+ +++ ++G+++gav+ +  +P+d++Ktrlq  +++   s  ++i ++ ++++k+eG +++y+G++p+++rvap +a++f++
  KKY15151.1 220 LPSYQTTVIGLISGAVGPFTNAPIDTIKTRLQKTPGEPGVSAISRISNITREMFKQEGPKAFYKGITPRVMRVAPGQAVTFTV 302
                 56788999********************************99999************************************86 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     5e-07    0.0044      33     233 .]     379     702 ..     338     702 .. 0.58

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5e-07
                    EEEEEEEBSCTCHHHHHHHHH................TTCEEEEECCH..........ECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEE CS
                    xxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  33 vlgLQEvdddelsriplllal................ggflgasstsp..........tgggggggnggavlsrfpltslfrrtfiefndlvaalr 102
                     ++LQEv + +l++i ++l++                          +                                              + 
     KKY15151.1 379 FICLQEVLHEQLEDIHAGLNAptpdqdaenfgstrtrS---------QakiyadndkwA--------------------------------YIGVG 433
                    69***************998888888764433333330.........233333333332................................33333 PP

                    EEEEEEEEEEEEE...........................................................CCCHHGHHHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxx...........................................................xxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 103 replaakleqlni...........................................................ashrdhdlvrdlqllalllqveal 139
                    r + ++ +e+  i                                                             + +  ++ + +l  l ++v ++
     KKY15151.1 434 RDDGKEAGEYSPIfyrksdwtllenstvwlsetpskpskswdaasiriltvgifkhnesrkivlalnthlddQGSKSRSESAKIILKVLRQFVVQG 529
                    333333333333344444445555555555444446666666666666666666666666666666666666667777777777777777777777 PP

                    HHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH......................H.......................SSCESCETTTTTT CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................x.......................xxxxxxxxxxxxx RF
  Exo_endo_phos 140 nadrgapvivaGDfNarpsdddsrvlrtrglalapap......................v.......................glyllgggptpty 190
                     ++    +++aGD+N++  +d +  l++ g  l                                                  + y++  + t + 
     KKY15151.1 530 RRFDINGAFLAGDLNSAAGADAYTILNAEGSGLRDLRtlvpglsnqppilpstgdftseAksqkpnspplnptsnpiqeaagtDYYGNEYTFTGFG 625
                    7777788999******77777777666665555555577777766666666555555440445555566666667777888444444444444444 PP

                    TTTTTEB-BEEE...........................EEECHHHCCEEEEEEECCHHEEC............................TSSCSS CS
                    xxxxxxxxxxxx...........................xxxxxxxxxxxxxxxxxxxxxxx............................xxxxxx RF
  Exo_endo_phos 191 vtraggsrlDri...........................laspalalfrsgvlppplalvrr............................ealtlS 231
                       + + r+D i                                                 +                            ++l++S
     KKY15151.1 626 EKDTKPTRIDFIhletadlvrekeekwnmnagssrgngsR---------------------SnndndndnksekspwlvqgysvlpnkfdDDLWIS 700
                    5556677777777666663333333333333333333330.....................24444444444444444444444555555677777 PP

                    SB CS
                    xx RF
  Exo_endo_phos 232 DH 233
                    DH
     KKY15151.1 701 DH 702
                    77 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.52
# Mc/sec: 4085.27
//
Query:       KKY15152.1  [L=682]
Description: putative nuclear export protein noc3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-27   95.4   0.6    1.6e-26   92.6   0.1    2.7  2  NOC3p     Nucleolar complex-associated protein
      7e-19   68.5   0.2      7e-19   68.5   0.2    2.1  2  CBF       CBF/Mak21 family


Domain annotation for each model (and alignments):
>> NOC3p  Nucleolar complex-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   0.1   1.7e-30   1.6e-26       2      94 .]     116     207 ..     115     207 .. 0.98
   2 ?   -1.0   0.1      0.28   2.6e+03      24      48 ..     584     608 ..     574     618 .. 0.59

  Alignments for each domain:
  == domain 1  score: 92.6 bits;  conditional E-value: 1.7e-30
       NOC3p   2 akeeiaslassiledPeenlsllkrllklaeskdsavtvrklallsllaVfkDiiPgYrIrsltekekeekvskevkklrefEqkLlkvYkky 94 
                 akee+a++a +++e+Pee+ +++k+l +++++ + +++++klal++++aV+kD+iPgYrIr+ +++e  +kvsk+v++lr++E++L++ Y++y
  KKY15152.1 116 AKEELAKIALHLNENPEEHPGAFKTLGAISHEAK-HPAIKKLALATQAAVYKDVIPGYRIRAYKDEELGNKVSKDVRNLRQYEHALITGYQAY 207
                 8***************************999999.89******************************************************99 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.28
       NOC3p  24 lkrllklaeskdsavtvrklallsl 48 
                 lkrll+++ ++ ++ t+  l+lls 
  KKY15152.1 584 LKRLLSVCLQTPEKSTLALLTLLSK 608
                 6666665555443444444444443 PP

>> CBF  CBF/Mak21 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   1.8      0.63   5.7e+03     139     139 ..     364     364 ..     254     474 .. 0.64
   2 !   68.5   0.2   7.8e-23     7e-19       2     168 ..     478     666 ..     477     667 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.63
         CBF 139 k 139
                 k
  KKY15152.1 364 K 364
                 1 PP

  == domain 2  score: 68.5 bits;  conditional E-value: 7.8e-23
         CBF   2 vqaLvllfqllskq..kqsel.....lsasdRFyraLYrkLld............................pelltsskralllnlly..........k 55 
                 ++  +++f+lls+q  ++s++     ls+   F ++ Yr+L+                             ++++ ++ + lll+ l+          +
  KKY15152.1 478 LLSTQTAFTLLSQQdvSKSASslsldLSF---FTSHIYRSLYPlslspdlelgpkslhlidphttspspilSKINIQTPSLLLLRVLHsillpttlssS 573
                 6778999******9883333367999999...*********99************************99999999999999*******88888766655 PP

         CBF  56 alkadkpvkrvaAFvKRllqlalhappsfalgllallsellk.hppklkalleekfkdvkeeeeeekkeekkkskaesgvYdptkrdpeysnaea.ssl 152
                 +l    +++++a F KRll+++l++p++++l+ll+lls+l++ h +kl+ l+       +ee     +      k+ +gv+   ++++e ++  +  ++
  KKY15152.1 574 SL----SPTLLATFLKRLLSVCLQTPEKSTLALLTLLSKLTSkHARKLSPLWY------TEE-----Q------KG-DGVFRGDADTIEGTGVWSgGVV 650
                 55....************************************9999*******......766.....3......45.89****99******8755389* PP

         CBF 153 wElsllakhfhPtVal 168
                 wE +ll+khf+P+V++
  KKY15152.1 651 WEGELLKKHFCPAVRD 666
                 **************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       941  (0.0524848); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.54
# Mc/sec: 3823.80
//
Query:       KKY15153.1  [L=1697]
Description: putative voltage-gated chloride channel [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-89  299.9  20.9      4e-89  299.3  20.9    1.2  1  Voltage_CLC  Voltage gated chloride channel
     0.0014   18.8   0.1       0.01   16.0   0.0    2.6  3  RTP1_C1      Required for nuclear transport of RNA pol II C-t
  ------ inclusion threshold ------
      0.026   14.7   2.8        2.3    8.7   0.0    5.0  5  HEAT         HEAT repeat
      0.054   13.3   0.5       0.13   12.1   0.5    1.6  1  PqiA         Paraquat-inducible protein A
       0.14   12.0   0.2         36    4.2   0.0    3.8  3  DUF3385      Domain of unknown function (DUF3385)


Domain annotation for each model (and alignments):
>> Voltage_CLC  Voltage gated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.3  20.9   1.1e-92     4e-89      15     353 ..      50     425 ..      45     426 .. 0.89

  Alignments for each domain:
  == domain 1  score: 299.3 bits;  conditional E-value: 1.1e-92
                  GGGSC-SHHHHHHHCTTSS--..-HHHHHHHHHHHHHHHHCTT-S-BTHHHHHHHHHHHHHHHHHH.TT.--SHHHHH.HHHHHHHHHHHHHHT-HHH CS
  Voltage_CLC  15 peaagsGipevkaalngvkgp..lslrvllvkflasvltvgsGlslGreGplvqiGAavgsglsrl.lklsrndrdrr.lvaaGaAAGiAAaFnaPlg 108
                    aagsG+ evk +l+g+  +  l l++l++k+ +++l+v+sGlslG+eGp+v+++A+vg++ +r+  k++ nd +rr +++a+aA+G+A+aF++P++
   KKY15153.1  50 YSAAGSGVAEVKVILSGFVLHgyLGLKTLILKTAGLILSVASGLSLGKEGPYVHVAACVGNIACRMfSKYNLNDGKRReVLSAAAASGVAVAFGSPIS 147
                  3699**************99999*****************************************995445788889999******************* PP

                  HHHHHCTTTSTSS--TTHHHHHHHHHHHHHHHHHHCTTS-S....-.T---...--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCHHHHH CS
  Voltage_CLC 109 GvlfalEevsrefslrallpvfvasvvaalvlrlllgeepa....fgeveslfalsllelilfvllGilgGllgalfvrlllkverlfrkleklkikk 202
                  G+lf+lEevs +f +++l+++f++++vaal+l++l  + +     f+ v  +++++++eli+fv+lG+lgG+lgalf+++++++++ fr++  +k ++
   KKY15153.1 148 GILFSLEEVSYYFPSKTLFRTFFCCIVAALFLKFLDPYGTGkiviFE-VRYTTDWQIFELIAFVILGVLGGALGALFIKTSRFWAKNFRRIPIIKRWP 244
                  ***********************************444433456576.777779************************************98888889 PP

                  HHHHHHHHHHHHHHCCCSCC.CSSSSCCH...........HHHHCTT-S-.............HHHHHH...HHHHHHHHHHHHHCTT-CSBSHHHHH CS
  Voltage_CLC 203 rlepalvgllvgllglllpasvlgggyel...........iasllegstl.............llsllllllllllkllataltlgsgvpgGifaPsL 276
                  +le++lv++++gl+g++    +++   +                     +              + +  l++++++k ++t++t+g++vp+Gi++Ps+
   KKY15153.1 245 MLEVLLVAVITGLVGFWNR--YTKLAVTElllelaspcgeD--------DisntglcpqqqdiPTVIRYLFIAFIIKSFLTTITFGIKVPAGIYVPSM 332
                  99***************83..44444433222333333330........134555666666668889999**************************** PP

                  HHHHHHHHHHHHHHHHH-C...............TSSC....HHHHHHCCTHHHHHCCS-HHHHHHHHHHCC--GCCHHHHHHHHHHHHHHHC CS
  Voltage_CLC 277 viGAalGrlvglvlalllp...............gaass.dpgafalvGmaaflagvtrapltaiviviEltgdlelllplmlavliAkavad 353
                  v+G+++Gr+vg++ ++l+                g +s+ +pg++alv+++a+++gvtr+++t++vi++Eltg+l+++lp+ lavl+Ak++ad
   KKY15153.1 333 VVGGLMGRIVGHATQYLVLrhpdfalfqscpntgGIESCvTPGVYALVAAGATMCGVTRLSVTLAVILFELTGSLNHVLPFSLAVLTAKWTAD 425
                  *****************77888999999******99999****************************************************98 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.6   1.3e+04      16      32 ..     750     766 ..     733     785 .. 0.62
   2 ?   -2.9   0.0       2.1   7.6e+03      15      33 ..    1177    1195 ..    1172    1210 .. 0.80
   3 !   16.0   0.0   2.9e-06      0.01       7      83 ..    1395    1482 ..    1390    1510 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.6
     RTP1_C1  16 rahglvlLrkliekksk 32 
                 +  +l+ Lr+l ++ ++
  KKY15153.1 750 QLAALNALRQLWTNITN 766
                 44455555555444432 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.1
     RTP1_C1   15 vrahglvlLrkliekkske 33  
                  +r h++v+L+ l+++ +  
  KKY15153.1 1177 IREHAMVTLNILAKQLDYR 1195
                  8999999999999998754 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 2.9e-06
     RTP1_C1    7 dlqdpllpvrahglvlLrkliekkske...........avldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleey 83  
                  +l +p + vr  +l+lL+++i    k+            ++ ++++l + +  L++++s+++++a +++ a + +  + ++ ++ + +
  KKY15153.1 1395 HLASPSPMVRLTCLNLLTQIIPLLGKDensflpvvndtWEAVVSRLLPVSKPELQEDESFIHIAAAHTVNATCRYAGDFMTTRIEDIF 1482
                  799*****************98766556799*****9999999****************************99999888887777776 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1         5   1.8e+04      19      28 ..     699     708 ..     698     708 .. 0.87
   2 ?    0.9   0.1       0.2   7.2e+02      12      29 ..     745     762 ..     736     764 .. 0.73
   3 ?   -0.7   0.0      0.69   2.5e+03       5      19 ..     857     871 ..     854     876 .. 0.82
   4 ?   -0.6   0.0      0.63   2.3e+03       1      30 [.    1162    1191 ..    1162    1192 .. 0.86
   5 ?    8.7   0.0   0.00065       2.3       9      29 ..    1396    1416 ..    1393    1418 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 5
                 HHHHHHHHHH CS
        HEAT  19 aAakaLgala 28 
                 aA++++++++
  KKY15153.1 699 AAFECIAEIV 708
                 89****9986 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.2
                 SSHHHHHHHHHHHHHHHH CS
        HEAT  12 pspeVReaAakaLgalae 29 
                 +   V  aA++aL +l  
  KKY15153.1 745 SVEVVQLAALNALRQLWT 762
                 56678*********9975 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.69
                 HHHHHT-SSHHHHHH CS
        HEAT   5 llkllsDpspeVRea 19 
                 ++kl s++ pe+Rea
  KKY15153.1 857 VVKLRSHERPEIREA 871
                 567669999****98 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.63
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalaev 30  
                  +l ++l+ll   ++e+Re A  +L  la++
  KKY15153.1 1162 ILYPILSLLGVRNSEIREHAMVTLNILAKQ 1191
                  56788999999*******999999988876 PP

  == domain 5  score: 8.7 bits;  conditional E-value: 0.00065
                  HT-SSHHHHHHHHHHHHHHHH CS
        HEAT    9 lsDpspeVReaAakaLgalae 29  
                  l +psp VR ++++ L+++++
  KKY15153.1 1396 LASPSPMVRLTCLNLLTQIIP 1416
                  789***************986 PP

>> PqiA  Paraquat-inducible protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.5   3.7e-05      0.13      79     116 ..     222     259 ..     206     265 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.7e-05
        PqiA  79 klgrrprgsrrllrlleflgrWsMldVfvvgilvalvk 116
                  + +  r +++ +r +  ++rW Ml+V +v++++ lv 
  KKY15153.1 222 LFIKTSRFWAKNFRRIPIIKRWPMLEVLLVAVITGLVG 259
                 3334456779999********************99985 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0      0.01        36      29      44 ..     606     621 ..     595     809 .. 0.75
   2 ?    2.5   0.0     0.035   1.2e+02     112     155 ..    1230    1274 ..    1204    1279 .. 0.61
   3 ?    2.2   0.0     0.043   1.6e+02       5      23 ..    1258    1277 ..    1254    1291 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.01
     DUF3385  29 revikllGilGALDPy 44 
                 rev+k+lG  GALD  
  KKY15153.1 606 REVLKVLGETGALDEK 621
                 89************75 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.035
     DUF3385  112 mnifktlglkcvpfLdqiipallsvirtte.esnlrefllqqLat 155 
                  +  ++  g+  +p+Ld +i +++ ++ t +   +l e l+q L+ 
  KKY15153.1 1230 LMLLRLCGTDIIPYLDDVIGSIFAALDTFHgYPQLIEILFQVLNA 1274
                  455555555666666666666666666544212455555555544 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.043
     DUF3385    5 yleypqLLelLlnilkte.q 23  
                  ++ ypqL+e+L+++l++  +
  KKY15153.1 1258 FHGYPQLIEILFQVLNAVvE 1277
                  678************98633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1697 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.01u 0.32s 00:00:01.33 Elapsed: 00:00:00.54
# Mc/sec: 9422.24
//
Query:       KKY15154.1  [L=716]
Description: putative histidine phosphatase superfamily clade-2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-31  110.5   0.0    1.5e-31  110.1   0.0    1.2  1  His_Phos_2     Histidine phosphatase superfamily (branch 2)
    4.6e-19   69.5   0.0    1.7e-18   67.7   0.0    2.0  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
      5e-18   65.8   0.0    1.2e-17   64.5   0.0    1.6  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1   0.0   2.6e-35   1.5e-31       2     374 ..     242     614 ..     241     647 .. 0.85

  Alignments for each domain:
  == domain 1  score: 110.1 bits;  conditional E-value: 2.6e-35
                 EEEEEEEEE--SBB-SHHHHHHHHHHHHHHHH.........HHCHHTGCCGGGGT.........--SSSTTS.B-HHHHHHHHHHHHHHHHHCH..... CS
  His_Phos_2   2 LksvvvviRHGdRtPkqkvkksvtspiflsllkkhkeKlkqlktalekkghfpgtyrkveveklqlilkwggelthaGrkqaeelGrqfrqrYp..... 95 
                 +++++++ RHG+R+P + +     ++ f  +l++     ++   ++ + ++f++ y         ++++    l  +G  q++  G  f+q+Y      
  KKY15154.1 242 VEQAHLLQRHGARFPISYFDDGTNDENFSVKLSNF--TTANPGQEFTGPLSFLNGY--------RYTMGQSY-LIGSGASQLFSAGVSFWQQYGrtlyn 329
                 799*************************9999644..4666777888889999877........56666666.88888888888888888888888888 PP

                 ...TCCHTTSS--.....TTEEEEEESSHHHHHHHHHHHHHHCHCCC---S-TTSTTGGG-TTTTCCCEEEHHHHCCCCHHCTTSHHTCHHHCHHHTGG CS
  His_Phos_2  96 ...lgLlrlhlty.....kdlkirassegRviaSAaafakGllglegeltdllskdkdllddsnaakdlldeakkklkelltegaeacpafewpikvak 186
                     +L+ +++ +      ++  r++s++R+  +  ++a G++g+  e     +  +  l   + a+ l+   +   ++++++ +++c +  +      
  KKY15154.1 330 asdAQLAYNASYAngtarPKPVLRTTSQSRIENTQINWALGFFGPSFE-----ETPNPTLANATSAFNLVIIPEGGTENNTLAAYDSCFNAID-ETIGY 422
                 88855554444222433567889*********************9994.....4555555555555555555559999999999999988777.56667 PP

                 HCHHHHCHCCCCCHHHHHHHCHHHCTTEEEE-HHHHHHHHHHHHHHHHHHCT-TTGGGCTH..HCHHHHHHHHHHHHHHHC........TTTCCCCHHH CS
  His_Phos_2 187 rvdelvkylkedmdeniakrleqlcpgesnllakerwdklercfyeknkfdiskicdlydemkydalhnrylkdleelyklakvipqEygigpeeklki 285
                  +d +v+ +++++ + ++ r++++ p+  n++  +++++ + c+ye++  + s++c l++e  +++  ++ + d  ++y++         +g+++++++
  KKY15154.1 423 LGDLDVETYIPKYLTDATARMQKYAPSGFNFSTNDTYAMQNICAYEISYLGSSDFCGLFTE--EEWAGFEVTLDIAYFYDY--------AYGNPTGRAQ 511
                 78999**********************99********************************..******************........********** PP

                 HHHHHHHHHHHHCTSSSEECCS..........CCCECS-SEEEEEE-HHHHHHHHHHCTTTTTBTTB.SSS.....TTT..HCCCS-CT-EEEEEEEEE CS
  His_Phos_2 286 Gllllnpllkkilndlqrtree..........atperhvrlrlyfthdshiysllnaLglpeelagedslaa....ldrlsaspelpymsqivfelyed 370
                 G++++++l+++++n+    +++          a+++  ++++++f+hd  i+s l+aL l+   + ++ +++    ++ +  s+ +p+++++v+e+  +
  KKY15154.1 512 GIGYVQELMARLTNQYIYSSNSsvnssitnnsADFPLGRPFYADFSHDDIIVSALTALSLDYLNEAPSLTEFppdpKRHFYLSHLTPFAARLVTEVVGC 610
                 *****************999889***********************************776666666556668899999******************99 PP

                 TCTT CS
  His_Phos_2 371 ssek 374
                 ss +
  KKY15154.1 611 SSSE 614
                 5444 PP

>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   2.8e-22   1.7e-18      41     178 ..       2     160 ..       2     161 .. 0.81

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 2.8e-22
                    HCCH-H..HHHHHHHH....CTGGG-TSEEEEE--CCCCCTT--HHHHHHH.....HHHHHH..HHCCC...GEEECEEEEE-TTT-TTSTCCHHH CS
  Lipase_GDSL_2  41 vsGattallrllerlr....dllrlkpdlvtiliGtNDlgrgvpaaaaaand...nleelid..alraaapgarilvlgplpptpeaaadarelna 127
                    +sG++t  ++ l+ ++    ++++ + +l+ti++G+ND+ + + ++++  ++   nl+++++  ++  +  +++il l+p+p++++++  ++++++
     KKY15154.1   2 FSGYNT--RQALRVIPwaipTPAQGDVRLITIFFGANDATYSGHSQHVPLDEyqeNLKKIVNhpMITIH--KPQILLLTPPPVNEHQFMFPDRTAE 93 
                    69****..8888888877768888888***********6666666666666533336666665544444..6678899999999999999999*** PP

                    HHHHHHHHHHHHHHHCT-EEE-HHHHHHHCCCCCGGBBTTS..................SSB-HHHHH CS
  Lipase_GDSL_2 128 viaaynealrevaaeegvpfvDlhdaladsgerladlladdg.................lHPnaaGyr 178
                    +++ y++al++ a+e + p+vD+++a+   +++ + +    g                 lH+++aGy+
     KKY15154.1  94 RTKTYADALKKTAQELNLPVVDIWSAFLRKAGWQDGDPLL-GrkdveesdklkqllldgLHFTPAGYK 160
                    ***********************99999999776544444.259999999999999999********8 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.0     2e-21   1.2e-17      71     198 ..      25     164 ..      17     166 .. 0.93

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 2e-21
                  S..EEEEE--CTCC-EECSSCTTTCEEHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSTCHCTCCCCHCCHHHHHHHHHHHHHHHHHHHHHCTEEEE CS
                  x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL  71 d..lviislGtNDsnlgkkstdaakkeaeeyiknlreaikelkeegapkaivvlvsppglgpqeekdakklgekgnefvgeynqrlndlaekdgfavv 166
                  d  l++i++G+ND    + s   ++ + +ey++nl++ +++     ++k+ ++l++pp++++     +    ++++e+ + y++ l+++a++ +++vv
   KKY15154.1  25 DvrLITIFFGANDA---TYSGHSQHVPLDEYQENLKKIVNHPM-ITIHKPQILLLTPPPVNE----HQFMFPDRTAERTKTYADALKKTAQELNLPVV 114
                  4559**********...99999******************655.789***************....99999*************************** PP

                  CHHHHHHHTHCCGCHCH..................TSSSB-HHHHHHHHH CS
                  xxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxx RF
  Lipase_GDSL 167 Dlydelqglsgieqlka..................DglHpsekgyeklae 198
                  D+++ + +++g++ +                    DglH++++gy+ + +
   KKY15154.1 115 DIWSAFLRKAGWQDGDPllgrkdveesdklkqlllDGLHFTPAGYKVMYK 164
                  *********88888777*****************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 4339.04
//
Query:       KKY15155.1  [L=440]
Description: putative ubiquitin carboxyl-terminal hydrolase 19 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3469.88
//
Query:       KKY15156.1  [L=546]
Description: putative thiamine biosynthetic bifunctional [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-66  224.6   0.0    3.1e-66  223.3   0.0    1.6  1  HK            Hydroxyethylthiazole kinase family
    2.2e-60  203.1   0.2    3.1e-60  202.6   0.2    1.2  1  TMP-TENI      Thiamine monophosphate synthase
  ------ inclusion threshold ------
      0.038   13.4   0.0      0.078   12.3   0.0    1.5  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
       0.13   11.6   0.8       0.34   10.2   0.8    1.6  1  NMO           Nitronate monooxygenase


Domain annotation for each model (and alignments):
>> HK  Hydroxyethylthiazole kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.3   0.0   6.9e-70   3.1e-66       2     244 ..     251     519 ..     250     521 .. 0.88

  Alignments for each domain:
  == domain 1  score: 223.3 bits;  conditional E-value: 6.9e-70
                 HHHHHH--EEEEE--TTTHHHHHHHHHHHT-EEEE--STTTHHHHHHTSSEEEEE-TT--HHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHHH CS
          HK   2 kklreksPlvhhiTNkVaqnfsANvllAlgaSPimseaeeEvselakianaLllNiGtleekaiealkaAvksakevnrPvvlDPVgvgAtelRrelal 100
                 ++ ++ +Pl h++TN+V+qnf+ANv l   +SPims +  E+++l+ + + L++N+Gtl++     + + + ++++++ P+v+DPVg gAt+lRr+ ++
  KKY15156.1 251 SHHHNLNPLSHNMTNTVVQNFAANVCLSTSSSPIMSLSGPEAHDLSLLRGGLVINMGTLTPDLLTSYLQGALAYNSSGNPIVFDPVGGGATALRRSAVR 349
                 677899********************************************************************************************* PP

                 HHHHHS--SEEEEEHHHHH.......HHHTSSCCSCSSSSSS-SHH...HHHHHHHHHHHHTSEEEEESSSEEEEESSEEEEEE-S-GGGGGSTTHHHH CS
          HK 101 ellkevklavikGNasEil.......slaglelkvkGvDskeaata...avaavqkvAqklrvvvvvtGevDvvsdgkkvyklknGtellgkitasGCl 189
                 +l++  +++vikGN+sEi        sl+ ++   kGvDs  + t      + v+++A++ + ++++tG +D++sdg+ v++++nG+++lgkit+sGC+
  KKY15156.1 350 TLMSGSYFSVIKGNESEIQtvyntsfSLTSTTSAQKGVDSAPSTTTpieKAQLVKSLARREKSIILLTGPTDYLSDGTVVLSISNGHPYLGKITGSGCA 448
                 ******************72222222456667889*****99999843235678899****************************************** PP

                 HHHHHHHHHTTB.............SSHHHHH.HHHHHHHHHHH.HHHH..HHHTTHHHHHHHHHHHHH-- CS
          HK 190 lgsvvaaflavk.............kdkllaa.veavllykvAgkeaaa..rsegsgsFqvelldalsqlt 244
                 lg+v+a f+a               + ++l a ++avlly++A++ a++  ++ g+gsF++++ld+l++lt
  KKY15156.1 449 LGAVIAGFCASArdlaeksspsptsTSPYLLAtLTAVLLYEIAAEYAVEsgKCFGPGSFIPAFLDQLYRLT 519
                 *********987555554455444444555566***********888772257788*************98 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.6   0.2   6.8e-64   3.1e-60       1     181 []       7     199 ..       7     199 .. 0.99

  Alignments for each domain:
  == domain 1  score: 202.6 bits;  conditional E-value: 6.8e-64
    TMP-TENI   1 lylvtdskld..kneellevveealkggvtlvqlRekeldarellelaeklaalcrkygvpliindrvdlalavgadgvHlgqddlpvaearellgpdl 97 
                 lylvtds+     +++l+++v+ea++ggvt+vq+R+k+ +++ l++ a+k+++++rk+gvpl++ndr+d+ala+ga+gvHlgqdd p+++ar++lg+++
  KKY15156.1   7 LYLVTDSTPAilGDRDLIRIVDEAIQGGVTIVQYRDKHSETSVLIDTAKKIHKVTRKHGVPLLVNDRIDVALAIGAEGVHLGQDDTPIQDARRILGEEA 105
                 7*****9999999************************************************************************************** PP

    TMP-TENI  98 iiGlSvhsleeaeeaealgadYigvGpifpTdtKkda.eplgleglkelaeale...iPvvaiGGitlenvaevl......eagadgvavvsai 181
                 iiG+S ++ eea+ a ++gadY+g+G++f T+tK+d  + lg  gl++  +a++   iP+vaiGGi+++n+ +vl       + ++g+avvsai
  KKY15156.1 106 IIGISSNTVEEAKIAIEAGADYLGIGAVFGTPTKSDTkSLLGPIGLQDFLSAISfspIPTVAIGGINPKNASRVLyqssspSKSISGIAVVSAI 199
                 ******************************************************999***********************999**********8 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.7e-05     0.078      87     219 ..     328     465 ..     303     468 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.7e-05
                   S.SEEEE---SSCTSSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT---S.....SHHHHHHHHHHHHHTT-SEEEEEEGGS-S......SSE CS
  Phos_pyr_kin  87 v.pvVlDPVmvaksgselleeeavealkeeLlplatvitPNlpEaeaLlgekik.....teedmkeaakkllklgakaVlikGghleg......eea 171
                     p+V+DPV    +g++ l+++av++l +      +vi  N  E++   +++++     ++++  + a +      ka l+k    ++      +  
    KKY15156.1 328 GnPIVFDPV---GGGATALRRSAVRTLMS--GSYFSVIKGNESEIQTVYNTSFSltsttSAQKGVDSAPSTTTPIEKAQLVKSLARREksiillTGP 419
                   348888888...67888888888888887..677888888888888888844443321133333334444444467788888886544345543323 PP

                   EEEEEEETSSEEEEEEEE----S--BTHHHHHHHHHHHHHHCTSSHHH CS
  Phos_pyr_kin 172 vvtdvlydgeeveeleaerietknthGtGCtlssaiaaelakgeslee 219
                     td+l dg+ v  +++ +    +  G+GC+l ++ia+  a  ++l e
    KKY15156.1 420 --TDYLSDGTVVLSISNGHPYLGKITGSGCALGAVIAGFCASARDLAE 465
                   ..59*************99999*******************9999865 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.8   7.6e-05      0.34      89     203 ..      55     172 ..      24     180 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 7.6e-05
         NMO  89 eaalelnieegvr..fyrkvevvldekvevvsfgfglpteevvarlkeagvvliptissvkearkvearGaDalivqGpeaGGhqGtpevgd.kglfaL 184
                 ++  ++  + gv+     +++v l  ++e v +g ++ + +   r    ++++ ++  +v+ea++++++GaD l +     G   Gtp + d k+l+  
  KKY15156.1  55 KKIHKVTRKHGVPllVNDRIDVALAIGAEGVHLGQDDTPIQDARRILGEEAIIGISSNTVEEAKIAIEAGADYLGI-----GAVFGTPTKSDtKSLLGP 148
                 3445566666777777799***************999999999998888999999999**************9944.....455554444433333322 PP

         NMO 185 ..vpqvldavd...iPviAaGGii 203
                   ++  l+a++   iP +A GGi+
  KKY15156.1 149 igLQDFLSAISfspIPTVAIGGIN 172
                 113456677778899999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 3401.80
//
Query:       KKY15157.1  [L=426]
Description: putative eukaryotic translation initiation factor 5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-39  133.9   0.0    6.8e-39  132.4   0.0    1.8  1  eIF-5_eIF-2B  Domain found in IF2B/IF5
    6.9e-22   77.4   0.2    6.9e-22   77.4   0.2    2.1  2  W2            eIF4-gamma/eIF5/eIF2-epsilon


Domain annotation for each model (and alignments):
>> eIF-5_eIF-2B  Domain found in IF2B/IF5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.4   0.0   7.6e-43   6.8e-39       2     116 ..       8     126 ..       7     127 .. 0.97

  Alignments for each domain:
  == domain 1  score: 132.4 bits;  conditional E-value: 7.6e-43
                   .CCCSSSS--SSTT--EEEETT....EEEETTHHHHHHHHTTSHHHHHHHHHHHHTSEEEES.ETTEEEESSSSSCCHHHHHHHHHHHHHTSTSSST CS
  eIF-5_eIF-2B   2 eekedkkerykmpklqvkvegkk...ktvivNfeeiakaLnrdpehvlkyllkelgtqgsid.engrlilngkfeakkleklldkyieeyVlCkeCk 94 
                   ++++d ++rykm+++q k+egk+   ktv+vN+++++++L r+p++v+ky+++elg+q++++ +++r+i+ng++ea kl++ ld +i+++VlCk+Ck
    KKY15157.1   8 RDVTDPFYRYKMERIQSKIEGKGngiKTVVVNLSSVSQSLARPPSYVIKYFGFELGAQTNTNpSDDRWIINGAHEAGKLQDQLDGFINRFVLCKNCK 104
                   567899******************************************************************************************* PP

                   STCEEECCSSSCEEEEESSSTC CS
  eIF-5_eIF-2B  95 spetelekeerllvlkCkaCga 116
                   +pet++++++  +vl+CkaCg+
    KKY15157.1 105 NPETDVVIKDGNIVLDCKACGQ 126
                   ********888888*******8 PP

>> W2  eIF4-gamma/eIF5/eIF2-epsilon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.3      0.68   6.1e+03      60      78 ..     238     256 ..     222     257 .. 0.51
   2 !   77.4   0.2   7.7e-26   6.9e-22       1      79 []     338     421 ..     338     421 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.68
          W2  60 kkaepfvewLeeaeeeeee 78 
                 +  + +   L+  e+e++e
  KKY15157.1 238 ELPTDLQRSLALNEDEDDE 256
                 4444555555556666665 PP

  == domain 2  score: 77.4 bits;  conditional E-value: 7.7e-26
          W2   1 eqvallgalerlcaekee...llkllakilkaLYdeDileEeailkWgekkskaekg...kkkvrkkaepfvewLeeaeeeeeee 79 
                 +q+a+lg++er++ +ke+   l   +++il+++Y++D++ Ee +  Wg+k+sk+  +   +kkvrk+ae+f+ewLe+ae++++ee
  KKY15157.1 338 HQKAFLGGTERFV-GKEHpdkLIAQVPAILMNYYQNDLITEEIVQPWGSKASKKYVDlatSKKVRKAAEKFLEWLETAESDDSEE 421
                 8***********6.4444366888999************************99876689999*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1338  (0.0746277); expected 358.6 (0.02)
Passed bias filter:                      756  (0.0421663); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 2671.90
//
Query:       KKY15158.1  [L=194]
Description: putative dihydrofolate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-18   65.3   0.2    1.8e-17   63.5   0.2    1.8  1  DHFR_1    Dihydrofolate reductase


Domain annotation for each model (and alignments):
>> DHFR_1  Dihydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.2     1e-21   1.8e-17      37     143 ..      17     155 ..       3     165 .. 0.76

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 1e-21
                 TCEEEEEHHHHHCC-...S--TTCEEEEE-S-TT........---.......TTEEEESSHHHHCCCCTTS....SEEEEEE-HHHHHHCGGG-S.... CS
      DHFR_1  37 gkpvimGrkTfeslg..krpLpnrkniVltrned........lkv.......egvevvssleealalakee...keevfviGGaeiYkqalplad.... 111
                  ++vimGrkT+es++  +rpL++rkn+V+tr+++                  ++v++v+sl++a++l k+    ++++f+iGG+++Yk+al+ +     
  KKY15158.1  17 KNTVIMGRKTYESIPkkFRPLQGRKNLVVTRTDAtglqerlrR-ElddqakkADVTCVTSLRDAVKLLKRSgdsQSKAFIIGGSQMYKTALEETYhgtf 114
                 579***********97778************887665555441.1333333235779********96655546789***************98875666 PP

                 ...EEEEEEES....S----SEE-----C..CCEEEEEEEE CS
      DHFR_1 112 ...klylTeid....aefegdtffpeide..eewelveree 143
                    ++  Tei+    +++e dtffp+  +   +w+ +e++e
  KKY15158.1 115 thlRILQTEIErldgSSLEIDTFFPANPKqdGSWRRAENRE 155
                 66678888998887778899*****6544114677766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1215.44
//
Query:       KKY15159.1  [L=670]
Description: putative small nucleolar ribonucleoprotein complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.03   14.6   0.1       0.97    9.8   0.0    3.1  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.046   8.3e+02      35      72 ..     143     182 ..     134     191 .. 0.68
   2 ?   -3.9   0.0         1   1.8e+04      37      52 ..     293     308 ..     282     324 .. 0.62
   3 ?    9.8   0.0   5.4e-05      0.97      36      75 ..     446     485 ..     427     495 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.046
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdg.ev.rlldaesgkv 72 
                  ++++ + +s+ W  d+  ++v+ + + ++ +l d e  +v
   KKY15159.1 143 SEKNDQKSSIWWDSDDDRIVVSLASNsRLrKLRDTEADDV 182
                  45555667999*9999999999877623324555555555 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1
  ANAPC4_WD40  37 edsevrsLaWkpdgkl 52 
                  + s +++L+++++  +
   KKY15159.1 293 SPSAITALSFHEKYPI 308
                  4456677777666554 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 5.4e-05
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                  +  + v ++aW +dg+ Lav  + gev+ +++++ +++  
   KKY15159.1 446 DGRGGVADFAWWKDGEGLAVLSKSGEVSEFSINERRIIAR 485
                  5667899************************999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.51
# Mc/sec: 3981.41
//
Query:       KKY15160.1  [L=503]
Description: putative hexokinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-81  272.1   0.0    4.7e-81  271.8   0.0    1.1  1  Hexokinase_2  Hexokinase
    3.6e-70  235.9   0.0      7e-70  235.0   0.0    1.5  2  Hexokinase_1  Hexokinase


Domain annotation for each model (and alignments):
>> Hexokinase_2  Hexokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.8   0.0   5.2e-85   4.7e-81       1     240 []     227     469 ..     227     469 .. 0.95

  Alignments for each domain:
  == domain 1  score: 271.8 bits;  conditional E-value: 5.2e-85
                   EEEEEESSSEEEEEEEEGGG-GGGTTTS.-TTSEEEEE--GGGTTTT-SS-..--HHHHHHHHHSSSTTS-HHHHCCSHHHHHHHHHHHHHHHHC.T CS
  Hexokinase_2   1 kiGlIlGtGtNacyleklsnieklegkk.eksgemviNtEwgafgdegklpllrtkyDkeldeespnpgeqlfEkmiSGmYLGelvrlvlldlieek 96 
                   kiG+I+GtG+Na+y+e++ +i+kl++ k + ++ m+iN+E+gaf++e+   l+rt+yD  +de+sp+pg+q+fEkmi+G+YLGe++rlvl+dl+e+k
    KKY15160.1 227 KIGCIFGTGCNAAYFENAGSIPKLAHLKlPPDTPMAINCEYGAFDNEHL-VLPRTPYDVVIDETSPRPGQQAFEKMIAGLYLGEIFRLVLVDLAENK 322
                   69************************999***************98555.556******************************************97 PP

                   .SSSC.....CCCSTTSS-THHHHHHHC--BTT-HHHHHHHHHCCS---.-HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH-.....SSEEEEEE CS
  Hexokinase_2  97 .llfkgkse.klktpysldteflseieedesedleevrevleellglesvteedleivrevceavsrRaarlvAagiaallkklgkeekekvtvgvd 191
                    l+f++++  +lk+py ld +fl++ieed+ e+l+e  ++++  lg+e+ ++++le+ r+++e++++Raarl+++g+aa++kk +    ++++vg+d
    KKY15160.1 323 nLIFENQDLsALKKPYCLDASFLATIEEDPFENLQESYDMFKTKLGIET-NKAELELARRLAELIGTRAARLSSCGVAAIVKKKSI---KQCHVGAD 415
                   7***777557*************************************98.999*****************************9544...79****** PP

                   SHHHHHSTTHHHHHHHHHHHHHT--S......-SEEEEE---TTTHHHHHHHHH CS
  Hexokinase_2 192 Gslyekypkfrerlqealrellgeepe.....kkvklklaedGsgvGAAliaav 240
                   Gs+++kyp+f+ r  +alr++l++ ++     ++v+++ aedGsgvGAAliaa+
    KKY15160.1 416 GSVFNKYPHFKARGAQALRDILDWPEKkrgekDPVVMMSAEDGSGVGAALIAAL 469
                   *********************98877788999********************95 PP

>> Hexokinase_1  Hexokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.0   0.0   7.8e-74     7e-70       2     199 .]      27     221 ..      26     221 .. 0.96
   2 ?   -3.1   0.0      0.69   6.2e+03      66      86 ..     310     330 ..     306     378 .. 0.56

  Alignments for each domain:
  == domain 1  score: 235.0 bits;  conditional E-value: 7.8e-74
                   HHHHHHHH---HHHHHHHHHHHHHHHHHHHS.S.STS--EE----S---S--EEEEEEEEESSSEEEEEEEEEESSS.-EEEEEEEEE--GGGGGSB CS
  Hexokinase_1   2 leeilkqfelsdeklkelvdrfleemekgLakekeslkmlptyvtrlPtGkekGtylAlDlGgtnlRvllveLlges.kveitqekykipeelktgt 97 
                   + ++++ f +s +klke++d+f+ e+ekgL+k++++++m+pt+v+++PtG+e+GtylAlD+GgtnlRv+ + L +e+ +++i q+kyk+peelktg+
    KKY15160.1  27 IANLENLFIVSPQKLKEITDHFIGELEKGLSKDGANIPMNPTWVMNFPTGDEQGTYLALDMGGTNLRVCEIILPEEKgEFDIIQSKYKMPEELKTGK 123
                   6788999************************99999***********************************9996556******************* PP

                   HHHHHHHHHHHHHHHHHHH....ST..T-S-EEEEEEE-SSEE-SBTT--EE-S--TT---TT-TTSBHHHHHHHHHHHTT-SEEEEEEE-HHHHHH CS
  Hexokinase_1  98 aeeLFdfiakciaefleeegeekkeekeeeelplGftFSFPveqtsldegtlirwtKgfaikdvegkdvvqllqealerkglpvkvvalvNDTvgtl 194
                   aeeL++++a+c+++f++ ++e ++  +    lplGftFS+P +q+ +d+g+l+rwtKgf++++vegkdvv  ++ al++++lp+k +al+NDT+gtl
    KKY15160.1 124 AEELWEYVADCLEQFIQYHHEGEDLGH----LPLGFTFSYPATQEYIDNGILQRWTKGFDVDGVEGKDVVPQFEVALQKRNLPIKLAALINDTTGTL 216
                   ********************9987766....****************************************************************** PP

                   HHHHH CS
  Hexokinase_1 195 lslaY 199
                   ++++Y
    KKY15160.1 217 VASQY 221
                   **999 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.69
                   EEEEEEEEEESSS-EEEEEEE CS
  Hexokinase_1  66 nlRvllveLlgeskveitqek 86 
                    +R +lv+L +++++  +++ 
    KKY15160.1 310 IFRLVLVDLAENKNLIFENQD 330
                   578888888866643333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 3186.87
//
Query:       KKY15161.1  [L=274]
Description: putative 6-hydroxy-d-nicotine oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1871.74
//
Query:       KKY15162.1  [L=1009]
Description: putative guanyl-nucleotide exchange [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-32  113.0   0.4    2.1e-32  112.3   0.4    1.3  1  Sec7          Sec7 domain
    4.2e-07   30.4   0.1    1.7e-06   28.5   0.1    2.1  1  PH            PH domain
    1.9e-06   28.3   0.1    6.6e-06   26.5   0.1    2.0  1  PH_9          Pleckstrin homology domain
  ------ inclusion threshold ------
      0.095   12.1   0.0        0.2   11.0   0.0    1.5  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
       0.32   10.5   2.4       0.31   10.5   0.6    1.9  2  DUF3829       Protein of unknown function (DUF3829)


Domain annotation for each model (and alignments):
>> Sec7  Sec7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3   0.4   5.8e-36   2.1e-32      44     181 ..     100     235 ..      88     237 .. 0.93

  Alignments for each domain:
  == domain 1  score: 112.3 bits;  conditional E-value: 5.8e-36
                 CCS-HHHHHHHHCSGG.HHHHHHHHHHHCTS--TT--HHHHHHHHCCCS-B-SSHHHHHHHHHHHHHHHHHTTCTCG-SHHHHHHHHHHHHHHHHHHC- CS
        Sec7  44 pgldkkklGeylgkek.efnkevlkefvdlfdfsglrldeAlRlflssfrlpgEaqkierilekFaekyfeqnpevfenadavfvLaysiimLntdlhn 141
                 + +++  + ++l+k   +f+k +l++++++f++   ++d+A+R++l +++lp+E q+i+r+l+ Fa++y+e np +f ++d ++ +a+si++L+ d hn
  KKY15162.1 100 QAVNRGVIASILCKSAdDFSKTCLRKYMRSFSYFTDSIDMAVRKMLMEVELPKETQQIDRLLQGFADRYCECNPGIFVSTDEAYFVAFSILLLHSDTHN 198
                 668899999999976559********************************************************************************* PP

                 TTSCCS--HHHHHHCTTTTBTTB---HHHHHHHHHHHHHS CS
        Sec7 142 pqvkkkmtledFiknnrgindgkdlpeefLeeiYdsIkee 181
                 ++ k+km+ +d++kn+++     ++++++Le  Yd++  +
  KKY15162.1 199 KNNKRKMQRQDYVKNTQDQ---VEVSQDILECFYDNVSYT 235
                 ****************844...46***********99876 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.1   4.8e-10   1.7e-06       5     103 ..     362     484 ..     359     486 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 4.8e-10
                 EEEEEETSSSSC...SEEEEEEEEETTEEEEESST..........................TCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEE CS
          PH   5 GwLlkkgsgkkk...swkkrwfvLkdsellyyknd..........................ksekdkepkgsislsncevvevvatedpkrkfcfelri 74 
                 G L++k+++kkk    w++  ++L++s+l+++++                           +  +d++p   +s+++ +  ++  + ++k+k+ f ++ 
  KKY15162.1 362 GVLWRKDPKKKKarsPWQEWGAILTSSQLYFFRDLawiktlmtqqqnhtkngnvehpvvfrPPLTDFKPDALMSMDDSVALRD--ETYKKHKNAFIFIK 458
                 889999999999999**********************************************99******************96..56999999999977 PP

                 STSSSTEEEEEEESSHHHHHHHHHHHHHH CS
          PH  75 verngsrtyllqasseeerkeWikaiqsa 103
                 +  +g  + ++ a++e ++++Wi+ ++ a
  KKY15162.1 459 H--GG-FEEVFLANDEADMNDWISRLNYA 484
                 7..77.9******************9987 PP

>> PH_9  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1   1.8e-09   6.6e-06      13     118 ..     366     485 ..     358     486 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.8e-09
        PH_9  13 eskgkktplkkrgWkevyavlkklvLylykdee......esesaetedlks...............lknakllgkirlhhaLaekasdYkkkshvFrLq 90 
                  ++ kk+   +  W+e  a+l   +Ly+++d         ++++                      l + k+ + +++  + a + + Ykk ++ F   
  KKY15162.1 366 RKDPKKK-KARSPWQEWGAILTSSQLYFFRDLAwiktlmTQQQN------HtkngnvehpvvfrppLTDFKPDALMSMDDSVALRDETYKKHKNAFIFI 457
                 4555555.34667******************5533323322222......122345577888999999999999************************* PP

        PH_9  91 tadgaeylfqtsdakevqeWvdtiNyvA 118
                    g e  f ++d+ +++ W++++Ny+A
  KKY15162.1 458 KHGGFEEVFLANDEADMNDWISRLNYAA 485
                 **************************98 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.4e-05       0.2      44     108 ..     525     592 ..     496     603 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.4e-05
                   -SHHHHHHHHHHHHTT-EEEEESSSHHHHH...CHHHHTCEECSHHHHHHH-SEEEE-S--STTTTTS CS
  2-Hacid_dh_C  44 lGrIGqavakrlkafgmkviaydrskkkee...eeeelgvelvsleellaesDivslhlpltpetrhl 108
                   +G++  ++ k  + +  +v+ y r+   e+   + e+lg    +l++ll+++  + +++p+++ tr+ 
    KKY15162.1 525 TGEVSVQTRKFDQHIAREVMTYRRQLMMEKineANEKLGSAQKELDNLLRNARHLLVMCPIQQRTRES 592
                   6777777777778888899999998887777555677778899**********************975 PP

>> DUF3829  Protein of unknown function (DUF3829)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.6   8.6e-05      0.31       8      92 ..     208     293 ..     199     296 .. 0.90
   2 ?   -1.9   0.0      0.52   1.9e+03      65      93 ..     548     576 ..     510     579 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.6e-05
     DUF3829   8 naYvklyNaldgriqeslarYfswvgneekgptgkektiygl.ydlkecleklkaaaaskpameelDeaakkliaaleklapllde 92 
                 ++Yvk  ++ ++ +q+ l+ + ++v ++  + ++ e  i++    +++++++l +a++s +    +D+ a  l ++le+l+p l+ 
  KKY15162.1 208 QDYVKNTQDQVEVSQDILECFYDNVSYTPFIHFDDEVAINSHrLANQRSKKNLFKATSSDTLKGPVDPYALILDNKLEQLRPSLKN 293
                 68***999999**********************9998877777666************************************9875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.52
     DUF3829  65 skpameelDeaakkliaaleklaplldea 93 
                  +  me+++ea +kl  a ++l +ll+ a
  KKY15162.1 548 RQLMMEKINEANEKLGSAQKELDNLLRNA 576
                 45567778888888877777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1009 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       964  (0.0537676); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 6713.16
//
Query:       KKY15163.1  [L=478]
Description: putative transcription factor cys6 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.50
# Mc/sec: 2889.97
//
Query:       KKY15164.1  [L=833]
Description: putative conserved oligomeric golgi complex component 4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.7e-125  416.6   0.0   9.8e-125  416.1   0.0    1.2  1  COG4      COG4 transport protein
  ------ inclusion threshold ------
       0.15   10.0   1.0       0.29    9.0   1.0    1.3  1  Prominin  Prominin
        1.7    7.5   6.0        2.8    6.7   6.0    1.2  1  Spc7      Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> COG4  COG4 transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  416.1   0.0  1.6e-128  9.8e-125       1     335 []     182     523 ..     182     523 .. 0.95

  Alignments for each domain:
  == domain 1  score: 416.1 bits;  conditional E-value: 1.6e-128
        COG4   1 LekaresLlelfleeFekAakenDkaeitrffkLFpligreeeGLdlYskyvceivaerarkelkseqskkdaetkagvfyanlltkLfeaiaqiveqh 99 
                 L++a esL++lfl+eF+kA+ke D a+itrffkLFplig++e+GLd+Y++yvc++va r+r++l++ +  +++  k+g+fyan+ltkLfe+iaqi+++h
  KKY15164.1 182 LSNASESLCGLFLREFDKAVKESDGAKITRFFKLFPLIGKSEVGLDVYGRYVCQGVAIRSRANLNAGTGGNQS--KDGLFYANALTKLFEHIAQIIDNH 278
                 689***************************************************************9887654..69********************** PP

        COG4 100 qplvekyYgegkmlkvierLqkecDrqagiildtfeeerqldrllsdvksykfsflv.rgqfpaksseaaaasaktsnesseeeegvdpreidalleEi 197
                 + lve++Yg+gkm +vierLq e+D+q+giildt+++er++dr+++d+ksy+f+flv +   p+k++  + +s++ ++++ +e+egvd++++d +l+E+
  KKY15164.1 279 GGLVERHYGSGKMARVIERLQMEADVQGGIILDTWADERSIDRKMTDIKSYAFTFLVqSFLPPQKGTAGTPRSNSPAQSRVSEDEGVDMKDVDGILGEM 377
                 *********************************************************766677778888889999999999****************** PP

        COG4 198 slmlsrwelYsrFlaskleeeeeeeeeeeqeeelelpdllrssklskkvsqellssYvpLetfylrrsvekAiqldelpsl.......k..asspliss 287
                 ++ml+rw+lY+rF+++k+ + e+  ++++  ++++lp++l+ s+l+kk+ ++++++++ ++tf++rrs+ekA+qlde p +       +  a++p+++s
  KKY15164.1 378 TMMLGRWSLYTRFISDKC-RPEDTANSDDVGNSTSLPEFLQRSSLMKKITDRVINPFNSMTTFFFRRSIEKAFQLDEQPPDlslnphkPlnANPPHVTS 475
                 ******************.66666677888999**********************************************988888765277******** PP

        COG4 288 vvDDvfyilkkvlrralstgsvdvvsavvnavkrvlesdllgvlqrkl 335
                 +vDDv+yi++kvl+++l t++ +++++vv++++rv++sd++g++qrk+
  KKY15164.1 476 AVDDVMYIVNKVLQQSLATSQESIIDSVVPTLSRVMSSDFIGMIQRKM 523
                 ***********************************************9 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.0   4.9e-05      0.29     617     700 ..      40     121 ..      17     130 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 4.9e-05
    Prominin 617 lckkltkvnletlaekleelanelsngkknlkqslkneaqdlraiqqelvlplessvkklkksvkkldeensdlqesikkllaa 700
                  ++  +++ l+tl ++ +e+++el +  + l+ +l ++a+++r+i + +  +  s+++ l +sv+kld e+s  +++++ + ++
  KKY15164.1  40 EREATVTTRLDTLLASQKEFQRELGRL-DLLRAQLSSQASKTRSISNGMLSTTASTANRLSSSVRKLDLEQSRVKATLEVV-EQ 121
                 455667788888888888999999777.99****************************************99999888655.44 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   6.0   0.00047       2.8     161     258 ..      27     124 ..      24     128 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00047
        Spc7 161 qeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkk.elaelqeqleeleekieelkeqkseleeeiaeaervle 258
                 + +e++ +l +l+e++a+++ +l++l + ++e++  +  +L  lr +l+++ ++ ++ ++ +l++  +  ++l++++ +l+ + s++++ ++  e+v e
  KKY15164.1  27 SVQEIKLALSQLHEREATVTTRLDTLLASQKEFQR-ELGRLDLLRAQLSSQASKTRSISNgMLSTTASTANRLSSSVRKLDLEQSRVKATLEVVEQVAE 124
                 5678888999*********************9877.899****************998763789999999*******************9999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (833 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      624  (0.0348039); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.35s 00:00:01.14 Elapsed: 00:00:00.52
# Mc/sec: 4786.29
//
Query:       KKY15165.1  [L=395]
Description: putative nad-dependent deacetylase sirtuin-2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-60  203.3   0.0    7.2e-60  201.9   0.0    1.6  2  SIR2       Sir2 family
  ------ inclusion threshold ------
       0.02   15.1   1.3      0.044   14.0   1.3    1.6  1  zf-RING_7  C4-type zinc ribbon domain


Domain annotation for each model (and alignments):
>> SIR2  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.9   0.0     8e-64   7.2e-60       1     177 []      43     224 ..      43     224 .. 0.99
   2 ?   -2.0   0.0      0.32   2.8e+03      44      85 ..     282     323 ..     270     333 .. 0.75

  Alignments for each domain:
  == domain 1  score: 201.9 bits;  conditional E-value: 8e-64
                 -GGGGGGGT---SSS.TTSHHHHSCHHHHSSHHHHHHHHHHHHH..HHHHHHHHHHCCTSS--HHHHHHHHHHHTTCEEEEEES-SSSHHHHTT-S..S CS
        SIR2   1 GAGiStesGipdfRs.keGlyaklakeelaspealfskkllvee..vfyniarellaeeaepnaaHkalkklekkgkllrliTQNiDgLekkaGsk..k 94 
                 GAGiSt++GipdfRs k+Glya+la+ +l + ea+f++++++++  +fy++a+el++ ++ p+++H++++ l +kg ll+l+TQNiD Le++aG+   k
  KKY15165.1  43 GAGISTSAGIPDFRSpKTGLYANLARLNLPFAEAVFDISYFRQNplPFYTLAHELYPGRYRPTISHSFIRLLHEKGILLKLFTQNIDCLEREAGVPadK 141
                 9*******************************************9**************************************************999* PP

                 EEETTEEEEEEEETTTSBEEECCGGHCHHHCCTT.B-TTTCCBEEEEE--CTSB-SHHHHHHHHHHHH-SEEEEES--STSTT CS
        SIR2  95 vvelHGslakakcvkcekkldkeelqeeieaekvpecekcgkllkpdvvfFGealpdklkkliekveeadlllviGtSlkVap 177
                 ++e+HGs+a+ +c++c+ ++  e+++e+i++++vp+c+kc++l+kpd+vfFGe+lp+++++  +  +eadl +v+GtSl+V+p
  KKY15165.1 142 IIEAHGSFATQRCIDCHLEYPDEKMKEHITKKEVPRCPKCNGLVKPDIVFFGESLPESFHRNRSLPSEADLAIVMGTSLTVQP 224
                 *********************************************************************************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.32
                 HHHHHHHHHHCCTSS--HHHHHHHHHHHTTCEEEEEES-SSS CS
        SIR2  44 vfyniarellaeeaepnaaHkalkklekkgkllrliTQNiDg 85 
                 ++ ++a +  +++++ +++  a++k e+ ++  + +T  iD+
  KKY15165.1 282 IWRQTAPKEAEKTKTETESAPAISKDEEVQDEIEKLTKDIDD 323
                 566666666677777777777888888888888888888885 PP

>> zf-RING_7  C4-type zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.3     5e-06     0.044       5      30 ..     157     182 ..     153     184 .. 0.96

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5e-06
                 T--B--CCHHHHHCCSTB-EE-TTT- CS
   zf-RING_7   5 ChmelppqvlselragdevvtCpeCG 30 
                 Ch+e p +  +e   ++ev++Cp C+
  KKY15165.1 157 CHLEYPDEKMKEHITKKEVPRCPKCN 182
                 *************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1381  (0.077026); expected 358.6 (0.02)
Passed bias filter:                      976  (0.0544369); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.50
# Mc/sec: 2362.03
//
Query:       KKY15166.1  [L=80]
Description: hypothetical protein UCRPC4_g06456 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.9    8.4   4.6          2    8.4   4.6    1.1  1  MSA-2c    Merozoite surface antigen 2c


Domain annotation for each model (and alignments):
>> MSA-2c  Merozoite surface antigen 2c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   4.6   0.00011         2     151     186 ..      31      67 ..      10      73 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00011
      MSA-2c 151 ekkPsrtssaetPaPsdaesaaaqPPes.kpaqaPaP 186
                 +++P+++ s +tP  s  es+ ++PPe+ + + aP+P
  KKY15166.1  31 HQRPTTAPSVQTPKESLKESSQQKPPEAsEITGAPEP 67 
                 5799**********************88677888988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.29s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 528.73
//
Query:       KKY15167.1  [L=1323]
Description: putative phospholipid-transporting atpase 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-68  228.7  20.4    9.2e-68  228.7  20.4    3.0  2  PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-t
    4.5e-25   87.1   5.3    1.4e-24   85.6   5.3    1.9  1  PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
    1.2e-11   45.3   0.5    5.9e-06   26.7   0.1    3.3  3  Hydrolase        haloacid dehalogenase-like hydrolase
    5.6e-11   42.4   0.0    2.7e-10   40.2   0.0    2.0  2  Cation_ATPase    Cation transport ATPase (P-type)
    1.6e-06   27.7   0.0    4.9e-06   26.2   0.0    1.8  1  E1-E2_ATPase     E1-E2 ATPase
     0.0051   16.6   0.1      0.022   14.5   0.0    1.9  2  Hydrolase_3      haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   1.8      0.17   5.2e+02     179     234 ..     487     547 ..     452     561 .. 0.59
   2 !  228.7  20.4   3.1e-71   9.2e-68       1     248 [.    1013    1247 ..    1013    1248 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.17
  PhoLip_ATPase_C 179 iliililgsillyflflllyssllps..........ssefygvleelfss.psfwlvlllvvvvall 234
                      ++ il+++s+++ +  l ++                +++ y++++++fs+  ++w++   +v ++l+
       KKY15167.1 487 LVGILLVLSLISSIGDL-IV-----RktssdklsylEYSSYNAASQFFSDiFTYWILYSNLVPISLF 547
                      22222222332222222.22.....123334577788899999999**9955555554333334433 PP

  == domain 2  score: 228.7 bits;  conditional E-value: 3.1e-71
  PhoLip_ATPase_C    1 vraSDyaiaqFrfLkrLLlvhGrwsyrRisklilyffyKnvvftlvqfwfqfyngfsgqslyeswlltlynllftslpvivlgifdqdvsae 92  
                       +r++D ai+qFr+L++LLlvhG wsy+R+sk+ily+fyKn+++ ++qfw++f n++sg +++esw+l+lyn+lft+lp++++gifdq +sa+
       KKY15167.1 1013 ARSADVAIGQFRYLRKLLLVHGAWSYQRVSKVILYSFYKNIALAMTQFWYSFQNAYSGETIFESWTLSLYNVLFTVLPPFAMGIFDQFISAR 1104
                       69****************************************************************************************** PP

  PhoLip_ATPase_C   93 lllkyPelYklgqknklfnlktfllwileglyqsliifflsylvlddssfsdgktndlqlfgtlvftalvlvvnlkvaletktwtliliili 184 
                       ll +yP+lY lgqk++          ++ g + s++if   +++       +gk ++++ +gt  fta+++vv+lk al t+ wt +++++i
       KKY15167.1 1105 LLDRYPQLYMLGQKGT----------FFLGYVFSTFIFKDDLILS------NGKVAGHWVWGTSLFTAMLTVVLLKAALVTNIWTKYTVLAI 1180
                       *************755..........3456777777777644443......6899************************************* PP

  PhoLip_ATPase_C  185 lgsillyflflllyssllps...ssefygvleelfsspsfwlvlllvvvvallpdllikvlkrtffp 248 
                        gs+l++f+fl ++ ++ p    s e+ g++  +f+sp f++++ll++ ++l++d+++k+ kr++ p
       KKY15167.1 1181 PGSLLIWFVFLPAFATVAPIigfSEEYNGIVPVIFTSPVFYALILLLPPLCLVRDFAWKYAKRMYAP 1247
                       ***********9888887778988888889***********************************98 PP

>> PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   5.3   4.6e-28   1.4e-24       1      67 []     219     285 ..     219     285 .. 0.97

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 4.6e-28
  PhoLip_ATPase_N   1 vyindreenekkkyasNkIsTsKYtlltFlpknLfeqFrrvaNlYFLviailqliPqisplspvtti 67 
                      +++n+r +n+++++++N++sT+KY+++t lpk+L+eqF+++aNl+FL++a+lq++P+isp++++tti
       KKY15167.1 219 IQLNNRPANSAHRFVDNHVSTAKYNMATLLPKFLYEQFSKYANLFFLFTAVLQQVPNISPTNRYTTI 285
                      689999999999*****************************************************97 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.017        52       3      24 ..     592     613 ..     590     698 .. 0.87
   2 !   26.7   0.1     2e-09   5.9e-06      71     150 ..     796     877 ..     752     923 .. 0.82
   3 !   11.1   0.0   0.00012      0.36     173     209 ..     961     998 ..     935     999 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.017
                 EEEEESBTTTBCHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttgepsvedviv 24 
                  v+ Dk+GTLt   ++ ++++ 
  KKY15167.1 592 YVFSDKTGTLTCNMMEFRQCTI 613
                 5889*******99999888775 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 2e-09
                 HTHHHHHHHH....HCHHHHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHH CS
                 xxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  71 igkpewltal....dippdlgaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaer 150
                 i + e+l+++    + ++ +g +  ++ +++ + + ++  +l+  +i+d   + +++ +++++L+ agi+v++ltgd +eta  
  KKY15167.1 796 IPENEFLEWQqvfeKASTTVGGNRAEELDKAAEIIEHDLTLLGATAIEDR--LQDGVPDTIHTLQTAGIKVWVLTGDRQETAIN 877
                 5555666666677888999999999999999999999*************..****************************9964 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00012
                 TTSHHHHHHHHHHHT.STGGGEEEEESSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 173 kpspegkvaaireLq.gkpeevamVGDgvnDaaalaaA 209
                  +sp +k  +++  +  +++  +++GDg+nD+++++aA
  KKY15167.1 961 RVSPLQKALVVKLVKrHQKALLLAIGDGANDVSMIQAA 998
                 578888888888887666778***************99 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   9.1e-14   2.7e-10      13      88 ..     678     764 ..     660     766 .. 0.82
   2 ?   -2.1   0.0       1.5   4.4e+03      14      29 ..     862     877 ..     856     890 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 9.1e-14
  Cation_ATPase  13 ekdevkllGnktEsALlvlaekl............gldteelreetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkrC 88 
                    + + +    +++E AL++ a+ l             ++++    e++ +++ +Fns+rKrms++++  p++k+r+y+KGA  +il+r 
     KKY15167.1 678 PGEIKYQAASPDEGALVEGAAMLnykfvarkprsvIIEIDGRPLEYELMAVCEFNSTRKRMSTIFRC-PDGKIRIYCKGADTVILERL 764
                    44455567799999**99999997777777777766666666667*********************9.8****************996 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.5
  Cation_ATPase  14 kdevkllGnktEsALl 29 
                     +++ l+G+  E+A+ 
     KKY15167.1 862 IKVWVLTGDRQETAIN 877
                    57899*********85 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.7e-09   4.9e-06       2     142 ..     313     507 ..     312     527 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.7e-09
                   SS--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.....EEE-TTTS---S-EE-............................. CS
  E1-E2_ATPase   2 llpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsa.....evdesaLTGEslpvek............................. 64 
                   l+ ++ +++r+ t e+ +  ++ +GDiv +++++  paD +++ +s+      ++++ L GE     k                             
    KKY15167.1 313 LNNSKIQILRGSTFESAKWVDVAVGDIVRVESEEPFPADLVLLASSEpeglcYIETANLDGETNLKIKqaipetahlvspaelgrlggrirseqpns 409
                   57789999***********************************9777766779***************9**************************99 PP

                   ......................G-TTEE-TT-EEEE-E.EEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-S CS
  E1-E2_ATPase  65 ......................ekgdmvfsGtvvvsge.akavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflial 138
                                            + +  G++  + + ++++V+ tg +t+l + a+++     k+t+++++l+  + +lv + l+++l+  +  l
    KKY15167.1 410 slytyeatmtlhagggekelplAPDQLLLRGATLRNTPwVHGIVVFTGHETKLMRNATATP---IKRTDVERMLNTQILMLVGILLVLSLISSIGDL 503
                   9999999999999999999998899999999999996647899999999998877665554...569999999999999999999999988877666 PP

                   TTTS CS
  E1-E2_ATPase 139 llgk 142
                   +++k
    KKY15167.1 504 IVRK 507
                   6665 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.54   1.6e+03      15      47 ..     845     877 ..     833     886 .. 0.79
   2 !   14.5   0.0   7.5e-06     0.022     206     227 ..     982    1003 ..     967    1007 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.54
                  ---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHH CS
  Hydrolase_3  15 kisektkeaikklkekgikvviATGRslravlp 47 
                  ++++   ++i+ l+ +gikv + TG   +++++
   KKY15167.1 845 RLQDGVPDTIHTLQTAGIKVWVLTGDRQETAIN 877
                  566777899***************977666665 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 7.5e-06
                   EEEEESSGGGHHHHHHSSEEEE CS
  Hydrolase_3  206 viafGDgeNDieMLeaaglgvA 227 
                    +a+GDg ND++M++aa +gv 
   KKY15167.1  982 LLAIGDGANDVSMIQAAHVGVG 1003
                   68***************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.54
# Mc/sec: 7379.35
//
Query:       KKY15168.1  [L=292]
Description: putative exosome complex endonuclease 2 ribosomal rna processing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-21   76.1   0.0    5.1e-21   75.6   0.0    1.3  1  RNase_PH    3' exoribonuclease family, domain 1
    1.4e-09   37.9   0.0    2.9e-09   36.8   0.0    1.6  1  RNase_PH_C  3' exoribonuclease family, domain 2


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.0   5.6e-25   5.1e-21       1     132 []      32     164 ..      32     164 .. 0.93

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 5.6e-25
                 EEEEEEEEESSSSTTSEEEEEEECCEEEEEEEEEEEEEE-TCCG--CCEEEECCCCECCCCEC-C...S...HHHHHHHHHHHHHHCCTC-C....... CS
    RNase_PH   1 elRslsietgvlsqanGSaylelGdtkvlasvtgpieerpseerddaegaldveveyapfasgerrregrpsdeeielsrlleralrpsill....... 92 
                 ++R++++ +g      GS+ ++lG t + +  ++++++ p ++  +++g +++  e++p+as++++  grp+++ei lsr+le+a+r+s  +       
  KKY15168.1  32 QFRNVDLTFG---DDYGSVTVQLGRTRINVQLSAEVVK-PLDD-RPFDGIFTIVTELSPIASPAFEV-GRPTEQEIILSRILEKAIRRSNAIdteslci 124
                 5888888888...889********************98.7777.456799***************77.9**********************99999999 PP

                 .CGCCTCEEEEEEEEEECCCS-CHHHCHHHHHHHHHCTCEE CS
    RNase_PH  93 .ekkpkstididitvlssdggslldalinaaslALadagip 132
                  ++ +++ i+ d+++l++dg +l d +++a+++AL++++ p
  KKY15168.1 125 vSGSKCWSIRADVHILDHDG-GLVDGSCIALIAALQHFRRP 164
                 99999***************.***************99876 PP

>> RNase_PH_C  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   3.2e-13   2.9e-09       3      66 ..     192     257 ..     190     258 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 3.2e-13
                 -EEEEEEEE..TTEEEES--HHHHHHSSEEEEEEEETTSEEEEEEEECSSCEEHHHHHHHHHHHHH CS
  RNase_PH_C   3 viavtvgkv..ddqfvlDptkeEedlsegdltlavagtkevvtlmkeggsqldeetlleaielAkk 66 
                 + +v++ +   ++++++D+t+ Ee+++egd+ ++++  +ev+++ k+gg ++d+  ll++ ++A++
  KKY15168.1 192 PLCVSFNFYheGETILVDATLREEQVREGDMVITMNRYGEVCQIAKMGGVPVDPILLLNCTKVALE 257
                 77888888744567************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.34s 00:00:00.90 Elapsed: 00:00:00.52
# Mc/sec: 1690.23
//
Query:       KKY15174.1  [L=744]
Description: putative arrestin (or s-antigen) n-terminal domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0001   21.2   0.2    0.00061   18.7   0.0    2.3  2  Bul1_N    Bul1 N terminus
    0.00015   21.2   0.0    0.00029   20.3   0.0    1.4  1  Bul1_C    Bul1 C terminus


Domain annotation for each model (and alignments):
>> Bul1_N  Bul1 N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0     0.069   6.2e+02     166     203 ..      40      75 ..      36      86 .. 0.76
   2 !   18.7   0.0   6.8e-08   0.00061     236     302 ..      88     163 ..      83     172 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.069
      Bul1_N 166 eytsGDlinGyviieNkssepvkFemfyvtLegtisvi 203
                  +t  D i G v+++   +++  F++f + +eg +s+ 
  KKY15174.1  40 TFTTLDSIDGKVVLK--FDKDTAFDIFGIFFEGATSTF 75 
                 566667888888875..578889**********98764 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 6.8e-08
      Bul1_N 236 rsvgievvpgevDsyDgtilgLdneriLePgtkYKkFFtFklPekLLDvtCkhell...........kHlllPPslGi 302
                 rsvg +v    v ++D+++  L+ + i + g +Y   F F +Pe+LLD  C+h+             +H+++PPs+G 
  KKY15174.1  88 RSVGSQVFMRVVHPFDQST--LPRDGIAKAGETYQVPFSFVVPERLLDHICQHSTTtrngdtdptkeEHIQVPPSVGD 163
                 5667777777777777775..688999999***********************986344444444446********95 PP

>> Bul1_C  Bul1 C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   3.3e-08   0.00029     230     269 ..     420     464 ..     343     466 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.3e-08
      Bul1_C 230 ketlvPsFesClcsRlYcvrvnikfdnhigs.....akidvPvsv 269
                  +t  P+F +Cl+sR+Y++ v i + n   +     +++++P++v
  KKY15174.1 420 TKTFLPTFHTCLVSRVYVLDVAISYHNPFKTmttptISLKLPIQV 464
                 579*********************987655411122456777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 5007.51
//
Query:       KKY15175.1  [L=653]
Description: putative multispanning membrane [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.5e-199  663.3   0.2   3.1e-199  662.9   0.2    1.0  1  EMP70     Endomembrane protein 70


Domain annotation for each model (and alignments):
>> EMP70  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  662.9   0.2  1.8e-203  3.1e-199       2     508 ..      41     648 ..      40     651 .. 0.91

  Alignments for each domain:
  == domain 1  score: 662.9 bits;  conditional E-value: 1.8e-203
       EMP70   2 ydYydllpfCkpe.eekk.........kesesLgevLrGdrienspyelkfgkdeeckvlCtkkltkeelkklkelIkngYvvnwlvDnLPvatsfvs. 89 
                 + Yydl+++C+p+ + ++         + s++LgevLrGdri++s++e+++gkd ec+ lC+++++++++k+ ++lI++gYv++w++DnLP+atsfv+ 
  KKY15175.1  41 FPYYDLPFTCPPSgK-SHggspfgsgqSISQNLGEVLRGDRIMTSDFEVHMGKDIECQYLCQREMDRKDVKRTQKLIEDGYVIEWILDNLPGATSFVTv 138
                 78**********953.224678998653444**************************************************************999999 PP

       EMP70  90 .......aaGfplGfvdkee..ekekyylnnhldfviryhkakeee....kkrivgfevepksvkde.ee.eeCp......keae.lel..eee..... 159
                        aaGf++G++d ++   k +y+lnnh+++v+r++ka++++    +k +vgfev++ks++   ++ + Cp      ++ + + +  + +     
  KKY15175.1 139 drskkyyAAGFKMGYKDFSPqtGKPRYFLNNHYTMVVRWRKAPGKAgangGKVVVGFEVYTKSIEAGnRNaTGCPaevtgeHNGMaMYIepN-Ntalaa 236
                 999999989********98567889*****************9988999879*************986557899988765433322333533.257877 PP

       EMP70 160 ......k........keeeteipftYsVkwresedvewasRwdlylesvedski.hwfsiinslvivlllslivavillrtlrkdiarynee....... 236
                       +        + ++ ++pftYs+++r++++++w++Rwd+y+++ ++++i hw++iinsl+i  +l +iv+vi+ rt++ di+   +        
  KKY15175.1 237 myphssYlpeddeadDGATITVPFTYSIYFRQDDTIDWSNRWDMYFSNQDETSItHWLAIINSLIISGILGAIVVVIWSRTMQGDIKGRGDGlledgkf 335
                 77766515566778877999**************************744444555********************************887779****** PP

       EMP70 237 .....................................eeee.aqeesgWKlvhgdVfrpPknsllLsvlvGsGvqlllmalvtlllallgflspsnrgs 297
                                                      ++ee +++ +gWKl+hgdVfrpP +  lL+ l+GsG+qll+m++++lll+++g+l+ps rg+
  KKY15175.1 336 kgrsrrsrgglkspklrekttglleklgendadldisSDEEsIDDITGWKLLHGDVFRPPPYGGLLAPLIGSGMQLLFMTTGLLLLSCFGVLNPSFRGG 434
                 ****************************999888776444546688***************************************************** PP

       EMP70 298 lltvalllyvllgliaGYvsarlyktfggekwkkntlltalllpgllflvffllnlilwakessgalpfgtlvlllllwflisvPlvliGsllgfkkk. 395
                 +++v++ l+v++g+++GY+s+r+yktf+g++w+knt++ta+l+pgllf+++f+lnl++wa++ss+alpfgtl++l++lw+li+vPlv+iGs++g+ k+ 
  KKY15175.1 435 FVSVGVGLFVFAGVFSGYFSGRVYKTFNGQNWRKNTIMTATLFPGLLFCLIFILNLFVWAQASSTALPFGTLIALVALWLLIQVPLVYIGSWYGYYKAd 533
                 ************************************************************************************************994 PP

       EMP70 396 aiehpvrtnqiprqipkqpwylkpllsvllgGilpFgaifielyfilsslwlek..iYylfgfLflvfllliittaevtilltYfqLcaedyrWwWrSf 492
                 a+ehp++t++iprqip+q+wy+k++  +l++G++pF+++fiel+f+++slw++k  +Yy+fgfL +v ++l+it++evti++tY+qLc+e+y+WwW+Sf
  KKY15175.1 534 AWEHPTKTTSIPRQIPPQSWYMKNYQGILIAGLIPFAVLFIELLFVFKSLWQDKsgYYYVFGFLSVVSVILVITVSEVTIIATYVQLCSENYHWWWQSF 632
                 55***************************************************9999****************************************** PP

       EMP70 493 lvggssalYvflysiy 508
                 +vgg+sa+++f+y++ 
  KKY15175.1 633 FVGGASAFWIFVYCVC 648
                 **************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       941  (0.0524848); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.51
# Mc/sec: 3885.05
//
Query:       KKY15176.1  [L=473]
Description: putative ubiquitin-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.8e-18   64.0   0.0    1.2e-17   63.4   0.0    1.3  1  ubiquitin    Ubiquitin family
    8.5e-07   28.8   0.0    1.9e-06   27.6   0.0    1.6  1  UBA          UBA/TS-N domain
    2.2e-05   24.2   0.0    3.9e-05   23.4   0.0    1.4  1  Rad60-SLD    Ubiquitin-2 like Rad60 SUMO-like
    5.6e-05   23.7   0.1    0.00069   20.1   0.0    2.3  2  DUF2407      DUF2407 ubiquitin-like domain
    7.7e-05   22.8   0.0    0.00015   21.8   0.0    1.5  1  Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
  ------ inclusion threshold ------
      0.035   14.1   0.0      0.061   13.3   0.0    1.3  1  HOIP-UBA     HOIP UBA domain pair
       0.11   12.3  17.2       0.13   12.0  12.3    2.9  2  XPC-binding  XPC-binding domain
        3.1    7.8   8.2        2.6    8.0   4.0    2.4  2  GerD         Spore germination GerD central core domain
        5.1    7.1  21.0       0.61   10.1  11.2    3.3  3  STI1         STI1 domain


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0     6e-21   1.2e-17       2      70 ..      16      86 ..      15      88 .. 0.93

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 6e-21
                EEEETTSEEEEEEEETTSBHHHHHHHHHHHH..TSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEES CS
   ubiquitin  2 tvktldgkkitleveesdtveelKekiaeke..gipaeqqrLiysGkvLedertleeygiqdgstlhlvlr 70
                +vk+  + k+tl+++ s+t +elK+k+a  e  +ip+e+qrLiysG+vL+d+ tl+ +++++g+t hlv +
  KKY15176.1 16 HVKSSGNAKYTLTLPLSTTTLELKNKLATAEfaDIPPESQRLIYSGRVLKDNDTLATHKVKEGNTMHLVKS 86
                68987777********************999767**********************************976 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   9.6e-10   1.9e-06       2      37 .]     433     469 ..     432     469 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 9.6e-10
                 CHHHHHHHHHTTS-HH.HHHHHHHHTTTSHHHHHHHH CS
         UBA   2 deeaiqrLveMGFdre.evveALratgnNeErAveyL 37 
                 ++e++ +L +MGF +  ++v+AL+++g++++ A+e L
  KKY15176.1 433 YAEQLRQLNDMGFYDFdRNVQALSRSGGSVQGAIEHL 469
                 89**********99988******************87 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0     2e-08   3.9e-05       5      71 ..      17      84 ..      13      84 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2e-08
                EEESSS--EEEEEETTSBHHHHHHHHHHHH..T----TT-EEEETTEE--TTSBGGGSS--TTEEEEEE CS
   Rad60-SLD  5 lkgkdgkevkikVkptttvskLieayrkkk..gipeeqkvrLiFDGeeLdpnstvedldiedgdtidvv 71
                +k++++ ++++    +tt  +L++++++++  +ip+ +++rLi+ G+ L++n+t++  ++++g t ++v
  KKY15176.1 17 VKSSGNAKYTLTLPLSTTTLELKNKLATAEfaDIPP-ESQRLIYSGRVLKDNDTLATHKVKEGNTMHLV 84
                89999*********************9997558999.***************************99976 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.5e-07   0.00069      21      87 ..      30      96 ..      22     113 .. 0.78
   2 ?    0.4   0.0      0.49   9.7e+02      46      72 ..     216     259 ..     197     284 .. 0.61

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.5e-07
     DUF2407 21 pntttvagLkqliRerlpaelasrrLrLIyaGrlLedttslasslklpeesvsdkaekskekgkapv 87
                p +tt+ +Lk+   +   a++  +  rLIy+Gr+L+d+ +la++  ++ ++ +  ++ ++++ ++p+
  KKY15176.1 30 PLSTTTLELKNKLATAEFADIPPESQRLIYSGRVLKDNDTLATHKVKEGNTMHLVKSAPSNQRQNPA 96
                568999*****9999999************************9988887775544444444444443 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.49
     DUF2407  46 LrLIyaGrlLedttslasslklpees..................v 72 
                  r+I + ++L++ ++l++sl +                      +
  KKY15176.1 216 RRMITDPQALRSMAQLHRSLGVGG-FggaggqqgfpapgvtsttE 259
                 378888888888888888887763.24677777777766544332 PP

>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   7.7e-08   0.00015      49      99 ..      53      97 ..      17     110 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 7.7e-08
                 CCEEEEETTEEE-TTSBCCCCS-TTTTTTTS-EEEEEEE---SS----.XX CS
  Rad60-SLD_2 49 ndlklilaGkiLennktlkelrlplgevkggvtvmHvvvrenlsekksekk 99
                 ++ +li++G++L++n tl+  +++ g++      mH+v +++ +++++ ++
   KKY15176.1 53 ESQRLIYSGRVLKDNDTLATHKVKEGNT------MHLVKSAPSNQRQNPAN 97
                 5569*******************99999......9**99877777665443 PP

>> HOIP-UBA  HOIP UBA domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.1e-05     0.061     102     136 ..     435     469 ..     430     472 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.1e-05
    HOIP-UBA 102 kKvkelaslgffdreevveaLrqsgGdvegAlveL 136
                 +++++l ++gf+d ++ v+aL+ sgG v+gA+ +L
  KKY15176.1 435 EQLRQLNDMGFYDFDRNVQALSRSGGSVQGAIEHL 469
                 57899***************************998 PP

>> XPC-binding  XPC-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0  12.3   6.7e-05      0.13       6      56 ..     171     222 ..     168     230 .. 0.87
   2 ?    1.6   0.2      0.12   2.3e+02      15      34 ..     373     391 ..     364     392 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.7e-05
  XPC-binding   6 nnpqFqqlRqlvqqnPqlLqplLqq...laqsnPqllqlIqqnqeeFlqlLnep 56 
                  +npqF+q+     qnPq++  ++qq   l++  Pq  q++q+  e+F ++++ p
   KKY15176.1 171 SNPQFAQMMNEALQNPQMIDMMIQQnpqLRAMGPQARQMLQS--EHFRRMITDP 222
                  89**********************555599999**9999996..6777777665 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.12
  XPC-binding  15 qlvqqnPqlLqplLqqlaqs 34 
                  +l+  +P++ q ++q +++s
   KKY15176.1 373 SLI-NDPAMYQNFMQSMSRS 391
                  555.48*********99986 PP

>> GerD  Spore germination GerD central core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.0    0.0013       2.6      50      78 ..     166     194 ..     163     202 .. 0.87
   2 ?   -0.1   0.0      0.45   8.9e+02      27      42 ..     373     388 ..     360     392 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0013
        GerD  50 lkdLmkDpeYqkmlleilkdpemekqlle 78 
                 + d++++p++ +m+ e l++p+m +++++
  KKY15176.1 166 MIDMLSNPQFAQMMNEALQNPQMIDMMIQ 194
                 568999*****************999875 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.45
        GerD  27 klfkdpkfaealaksm 42 
                  l++dp   +++ +sm
  KKY15176.1 373 SLINDPAMYQNFMQSM 388
                 3444555555555555 PP

>> STI1  STI1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  11.2   0.00031      0.61      14      47 ..     166     200 ..     164     203 .. 0.87
   2 ?    1.8   0.2      0.12   2.3e+02      12      32 ..     204     224 ..     200     232 .. 0.69
   3 ?   -0.1   0.1      0.45     9e+02      17      29 ..     374     386 ..     371     390 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00031
        STI1  14 trellsDPefvakleeiqsNPqalqqym.sDprim 47 
                 + ++ls+P+f ++++e  +NPq++ +++ ++p+  
  KKY15176.1 166 MIDMLSNPQFAQMMNEALQNPQMIDMMIqQNPQLR 200
                 5579********************87777**9875 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.12
        STI1  12 PetrellsDPefvakleeiqs 32 
                 P+ r++l+   f+ ++ + q+
  KKY15176.1 204 PQARQMLQSEHFRRMITDPQA 224
                 888888888888888766554 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.45
        STI1  17 llsDPefvaklee 29 
                 l++DP + + +++
  KKY15176.1 374 LINDPAMYQNFMQ 386
                 5566666554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.70u 0.36s 00:00:01.06 Elapsed: 00:00:00.56
# Mc/sec: 2562.56
//
Query:       KKY15177.1  [L=1209]
Description: putative pre-mrna-splicing factor rse1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.6e-160  533.8   0.0   5.2e-160  533.3   0.0    1.3  1  MMS1_N       Mono-functional DNA-alkylating methyl methanesul
   1.4e-102  343.3   0.0   1.2e-101  340.3   0.0    2.4  3  CPSF_A       CPSF A subunit region
  ------ inclusion threshold ------
      0.029   14.7   0.0        1.1    9.6   0.0    3.4  2  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
       0.16   12.9   0.0         13    6.9   0.0    3.9  4  WD40         WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> MMS1_N  Mono-functional DNA-alkylating methyl methanesulfonate N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  533.3   0.0  1.2e-163  5.2e-160       1     489 []      82     608 ..      82     608 .. 0.96

  Alignments for each domain:
  == domain 1  score: 533.3 bits;  conditional E-value: 1.2e-163
      MMS1_N   1 DlLvvgsdsgelvflsynpeknqfetvhshetlgksgsrrsqpGqylavDPkgraiavsayekvflvyslkkkeilnr..ealll.ssplearksegvi 96 
                 D+L++gsdsg++++++y p +n+f+++h  et+gksg+rr  pGqylavDPkgra+ ++++ek +lvy      +lnr  +a+l+ ssplea+k+++++
  KKY15177.1  82 DYLIIGSDSGRITIVEYVPAQNRFNRIH-LETFGKSGVRRVIPGQYLAVDPKGRACLIASVEKNKLVY------VLNRnaQAELTiSSPLEAHKPQTLV 173
                 9***************************.***************************************......88888899999************** PP

      MMS1_N  97 lsmvFldpgykeednpiialle.......qdrrg......kteltlyewdlglnlvrkisktsepkknldsganlLiplpk....pggvlVcgetiity 178
                 +++++ld+gy e  npi+a+le       qd+ g      ++ l++ye+dlgln+v +  k++ep   +d++a +L ++p+    p+gvlVcge++i+y
  KKY15177.1 174 FALTALDVGY-E--NPIFAALEidyteadQDPSGealdqlEKLLVYYELDLGLNHVIR--KWAEP---VDRTATMLFQVPGgadgPSGVLVCGEDSIVY 264
                 **********.6..9*******8887766555559999999*****************..*****...*************99999************* PP

      MMS1_N 179 kdildqedirkkswarPrrekatn.......fv..aweklds.fffllatedGdLylleiek..deds....gkvvtsislkyfdtvsvasalvilksg 261
                 ++  +qe++r+   ++Prr++  +       +v  +++k+++ fffll++edGdL++++i++  d  +    +++v+ +++kyfdtv+va++l+ilksg
  KKY15177.1 265 RHH-NQEAFRV---PIPRRRNVLEnpdrkrhIVsgVMHKMRGaFFFLLQSEDGDLFKVTIDMleD--EngqpTGEVQRLKIKYFDTVPVATSLCILKSG 357
                 ***.8888***...******88889*****64489*************************99652..4456999************************* PP

      MMS1_N 262 fLfvasefGdgqlyqieargedd............................knleliqtldNlaPilDfkvvkesdlasegqdqiytcsGagkrgsLre 332
                 fLf+ +e+G++q+yq+e++g+dd                            +n++l++++d ++P+lD+kv+   +l +e+ +qiyt++G g r+s++ 
  KKY15177.1 358 FLFISCETGNHQFYQFEKLGDDDeetefmsdnypsdplephspaffhpraaENITLVESIDTMNPLLDCKVA---NLLDEDAPQIYTLCGTGARSSFKT 453
                 *********************99*************************************************...************************ PP

      MMS1_N 333 lRsGieveelavseepgspitgvWtlklssedeyddylvlSfvneTlvlsidgdgeveevtedsglllsvpTLaagnlgdgslvQVtpngirliradkr 431
                 l++G++v+e++ se+p  p ++vWt kl+++deyd+y+vlSf n Tlvlsi g+ +veevt d+g+l+s+pTLa+++lg+++l+QV+p+gir+i+ad+r
  KKY15177.1 454 LKHGLQVSEIVESELPSVP-SAVWTTKLTQNDEYDAYIVLSFTNGTLVLSI-GE-TVEEVT-DTGFLSSAPTLAVQQLGEDALIQVHPRGIRHIQADRR 548
                 *******************.*******************************.*9.******.99*********************************** PP

      MMS1_N 432 vsewkppngksiiaaaangeqllvalsgrelvyfeld....lieevekkdleslsevsclsl 489
                 v+ew +p+++si+aa++n++q++vals++e+vyfe+d    l e+ e+++++  ++v+clsl
  KKY15177.1 549 VNEWPVPQHRSIVAATTNERQVAVALSSGEIVYFEMDtdgsLQEYEERREMS--GTVTCLSL 608
                 ************************************7789999*********..******96 PP

>> CPSF_A  CPSF A subunit region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.36   1.6e+03     186     206 ..      80     100 ..      35     115 .. 0.65
   2 ?   -1.1   0.0       0.2   8.9e+02      47     124 ..     560     643 ..     553     656 .. 0.64
   3 !  340.3   0.0  2.7e-105  1.2e-101       1     321 [.     854    1175 ..     854    1176 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.36
                 SSSEEEEEETTSEEEEEE--T CS
      CPSF_A 186 gedtvlvaDkfgnlfvlrydp 206
                 ++d+++++ ++g +++++y p
  KKY15177.1  80 NKDYLIIGSDSGRITIVEYVP 100
                 334555555555555555555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.2
                 EEEEEEE---SSS--E.EEEEEEEEEE-SS--EEEEEEEE.EEEES----EE..EE......TTEEEEE-S.SEEEEEEE-TTS-EEE CS
      CPSF_A  47 lvVGtafnlgedpaarsGrilvfeiievpetnrkLklvhk.eevkgavtala..ef......qGrllvgvg.qkvrvydlgedktLlr 124
                 +v +t+  ++  +a +sG i  fe++ ++    +L++  +  e+ g+vt+l+  e+      + +l+vg+  ++vr+  l+ d+tL  
  KKY15177.1 560 IVAATTNERQVAVALSSGEIVYFEMDTDG----SLQEYEErREMSGTVTCLSlgEVpagrvrSSFLAVGCDdSTVRILSLDPDSTLEN 643
                 66777777777777777999999999964....4555544156677777665213354445555566666325666766666665555 PP

  == domain 3  score: 340.3 bits;  conditional E-value: 2.7e-105
                  B-EEEEE-T..TT.-EEEEE--TTEEEEEEEE--B-SSTTT---B--EEEEEEE---SSS--E..EEEEEEEEEE-SS--EEEEEEEEEEEES---- CS
      CPSF_A    1 assiklvdpiske.eidsleLeenEavlsvksvelessettkekkellvVGtafnlgedpaars.GrilvfeiievpetnrkLklvhkeevkgavta 95  
                  as+i++vdp++++ +i ++eLe+nEa++s++ + ++++ +    + +l+VGt++++  +p+++s G ++v++++e+++   +L+++hk++v+++++a
  KKY15177.1  854 ASCIQIVDPVKEKaVIATIELEDNEAAVSIAAAPFSGQ-D---DEVFLIVGTGKDMVANPPSSSaGFLHVYRFHEDGK---ELEFIHKTKVEKPPRA 943 
                  69*********99666*******************954.3...499**************9999***********855...**************** PP

                  EEEETTEEEEE-SSEEEEEEE-TTS-EEEEEEEE-SS.-EEEEEEETTEEEEEESSS-EEEEEE-S.SS--EEEEEEESS---EEEEEEE--SSSEE CS
      CPSF_A   96 laefqGrllvgvgqkvrvydlgedktLlrkafldtql.yvvslkvlgnriivgDlmkSvtfveyde.enyklilfardtqkrwvtaaeflvdgedtv 190 
                  l  fqGrll+gvgq +r+ydlg ++ +lrk++  ++  ++v l+++g+rii++D+++Svt++ y+  en+ li+fa+d+ +rw+t+++++ d+ +tv
  KKY15177.1  944 LLAFQGRLLAGVGQDLRIYDLGMRQ-MLRKCQVTCAPnMIVGLQTQGSRIIISDVQESVTYAVYKYqENK-LIPFADDMISRWTTCTTMV-DY-ETV 1036
                  *************************.*******8888*****************************5555.*******************.**.9** PP

                  EEEETTSEEEEEE--TTSGGGTTTT..................EEEEEEEEE-SS----E...EEEE.SSS--S-EEEEEE-TTS-EEEEEE.--HH CS
      CPSF_A  191 lvaDkfgnlfvlrydpeasessdgdp.................rleeraefhlgeivtslrkgslvpgeaesssspqllyatldGsigllvPlisee 270 
                  +++Dkfgnl++lr+ ++ase++d+d                  rl  +a+f+ ++i+ts++k +lv+g++++     l++++l+G++g+lvP++s+e
  KKY15177.1 1037 AGGDKFGNLWLLRCSQKASEEADEDGsgahlihergylggapnRLSLTAHFFPQDIPTSIQKAQLVAGGRDV-----LVWTGLQGTLGMLVPFVSRE 1128
                  ************************************************************************.....******************** PP

                  HHHHHHHHHHHHHHHS--SSS--HHHHS---..----.---EEHHHHHHHH CS
      CPSF_A  271 eyrrlqaLqqqLrkelkhlgGldhrafRsyyspkseevkgviDgdllerfl 321 
                  +++++q+L++qL+ + ++l+G+dh+ +Rsyy p    vkg iDgdl+e +l
  KKY15177.1 1129 DVDFFQTLEMQLKEQNPPLAGRDHLIYRSYYVP----VKGTIDGDLCETYL 1175
                  *********************************....************97 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.53   2.4e+03      50      81 ..     124     155 ..     121     162 .. 0.83
   2 ?    9.6   0.0   0.00024       1.1      10      80 ..     561     648 ..     556     662 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.53
  ANAPC4_WD40  50 gklLavaysdgevrlldaesgkvvhslsvkse 81 
                  g+ Lav  +  ++ + ++e+ k+v  l+ +++
   KKY15177.1 124 GQYLAVDPKGRACLIASVEKNKLVYVLNRNAQ 155
                  88999999999999********9998876655 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00024
  ANAPC4_WD40  10 iAlatedgellvfRlngqrvwtl...........eedkedsevrsLaW......kpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  +A  t++ +++v   +g+ v+             e+ + +++v++L+       +   ++Lav+++d++vr+l+     ++++ sv++
   KKY15177.1 561 VAATTNERQVAVALSSGEIVYFEmdtdgslqeyeERREMSGTVTCLSLgevpagRVRSSFLAVGCDDSTVRILSLDPDSTLENKSVQA 648
                  666666667777666666665545666666666666666777776665332222345578**************99999998877765 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.5   6.6e+03      16      34 ..      71      93 ..      55      95 .. 0.67
   2 ?    6.9   0.0    0.0028        13       8      36 ..     600     632 ..     593     632 .. 0.74
   3 ?   -0.0   0.0      0.43   1.9e+03       6      31 ..    1082    1107 ..    1079    1111 .. 0.74
   4 ?   -3.5   0.0         4   1.8e+04      20      35 ..    1179    1194 ..    1175    1194 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.5
                EE....EETTSSEEEEEETTSEE CS
        WD40 16 la....fspdgawlasGsdDgtv 34
                la      +++++l+ Gsd g +
  KKY15177.1 71 LAafrlAGSNKDYLIIGSDSGRI 93
                55555545678888889976665 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0028
                 ESSSSEEEEE......EETTSSEEEEEETTSEEEE CS
        WD40   8 tGHssvtsla......fspdgawlasGsdDgtvri 36 
                 +G   vt+l+          +++la G+dD tvri
  KKY15177.1 600 SGT--VTCLSlgevpaGRVRSSFLAVGCDDSTVRI 632
                 555..888877666665556677***********8 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.43
                  EEESS.SS..E.EEEEEETTSSEEEEEETT CS
        WD40    6 tltGH.ss..v.tslafspdgawlasGsdD 31  
                  +lt+H ++  + ts+     +a l++G++D
  KKY15177.1 1082 SLTAHfFPqdIpTSI----QKAQLVAGGRD 1107
                  789997446688988....77778888766 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 4
                  TTSSEEEEEETTSEEE CS
        WD40   20 pdgawlasGsdDgtvr 35  
                   d++++++G  D++vr
  KKY15177.1 1179 NDKKMMIAGELDRSVR 1194
                  56777888977**998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 7659.71
//
Query:       KKY15178.1  [L=541]
Description: putative m-phase inducer phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-12   45.8   0.0    1.5e-11   44.8   0.0    1.5  1  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   8.3e-16   1.5e-11      15     104 ..     348     441 ..     334     444 .. 0.78

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 8.3e-16
   Rhodanese  15 a...llDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggr.aaaaaallk............klGyknvsvl 97 
                     ++D+R+++eY+ ghI +Avn+            ++  +l  +l +   + k  +v++c+ + + a   a++++            +l y+++++l
  KKY15178.1 348 EklvIIDCRFEYEYNGGHIAEAVNF------------NDKEALSSRLFNIEPTSKALLVFHCEYSAHrAPIMAKFIRhkdravntdnypYLTYPELYIL 434
                 2345*********************............44444455555555678999**********55555888888898888887666999****** PP

   Rhodanese  98 dGGfkaw 104
                 dGG++++
  KKY15178.1 435 DGGYSSF 441
                 *****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       202  (0.0112667); expected 358.6 (0.02)
Passed bias filter:                      160  (0.00892409); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 3486.32
//
Query:       KKY15179.1  [L=606]
Description: putative lysyl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-77  259.0   0.9    7.3e-77  258.5   0.9    1.2  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    7.7e-12   45.0   1.1    2.7e-11   43.3   0.1    2.4  3  tRNA_anti-codon  OB-fold nucleic acid binding domain
      1e-05   25.2   0.1      0.021   14.3   0.0    2.5  2  tRNA-synt_2d     tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.5   0.9   1.2e-80   7.3e-77       2     313 ..     225     573 ..     224     574 .. 0.90

  Alignments for each domain:
  == domain 1  score: 258.5 bits;  conditional E-value: 1.2e-80
                  CCHHHHTHHHHC.CSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE-E-S-SHHHHHHHHHCTHSEEEEEE CS
                  xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   2 eelrlknryldl.rtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeffaLtqspqlylellivagidrvfqia 98 
                   e r+++ryldl  +ek ++v+ +rs++++++r+++++++f+e+etP++   ++++ a++F+++++  + ++f ++++p+lyl++liv+g++rv++++
   KKY15179.1 225 TEARFRQRYLDLiMNEKSRNVFVTRSKMITYIRNFFDQRDFVEVETPMMNAIAGGATAKPFVTHHNDLNMDLF-MRVAPELYLKMLIVGGLERVYELG 321
                  6889***************************************************************988999.************************ PP

                  EEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTS..EE-SSS-EEEEHHHHHHHHHTS........... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx........... RF
  tRNA-synt_2  99 raFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrns..kdlkkpfkrltykeaieklnei........... 183
                  r+FR+E ++ ++++ EFt++e+++++++  d+m+++eel++ +vk+v+ + +++  ++++ +    + ++p+kr+++  a+e+++++           
   KKY15179.1 322 RQFRNEGIDLTHNP-EFTTCEFYWAYADVYDVMNLTEELVSGMVKHVTGGYRTK-FHTQSGEVyeVNWEAPWKRIEMIPALEEATGEkfppgtelhtq 417
                  **************.********************************5555333.3333333356788899************998889998888887 PP

                  .............-SS--HHHHHHHHH....................HS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTEEEEEEEEB-- CS
                  .............xxxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 184 .............gkdldkaderalvk....................keknepvfvtdfPaelkpFyarkeeddkkltesyDllingvElvgGslRie 248
                               +            +                    ++  +p+f+t +P++++p+++ ++e  + + e+++ ++ + E+v+++++++
   KKY15179.1 418 etndflkkllkkmNV-----------DcsppqtnarmldklvgefieETCINPTFITGHPQMMSPLAKYHREL-PGICERFEAFVCKKEIVNAYTELN 503
                  766666666655534...........1444444444558899999999999*********************9.9*********************** PP

                  SHHHHHHHHHHCCHH.....SSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  xxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 249 dpeeleeklkskgld.....eeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                  dp  ++ +++++  +     +ea+  ++++++ leyG+pp+gG+g+G+dR++m+l+++  I++v+aFP +
   KKY15179.1 504 DPFDQRLRFEEQARQkeqgdDEAQIIDENFCTSLEYGLPPTGGWGMGIDRMTMFLTDNYTIKEVLAFPFM 573
                  ***********99988999999**********************************************76 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.78   4.7e+03      31      53 ..      97     119 ..      95     119 .. 0.81
   2 !   43.3   0.1   4.5e-15   2.7e-11       1      76 []     123     208 ..     123     208 .. 0.95
   3 ?   -1.9   0.0      0.57   3.4e+03      39      61 ..     352     375 ..     346     388 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.78
                      EEEEETHHHHHHHTTS-TTSEEE CS
  tRNA_anti-codon  31 qvvlfreeatklaenlkeGdvvr 53 
                      qv+ +  e+ k +e lk+G +v+
       KKY15179.1  97 QVTTDLREFLKKYEPLKKGEHVK 119
                      6777777899999******9985 PP

  == domain 2  score: 43.3 bits;  conditional E-value: 4.5e-15
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET......HHHHHHHTTS-TTSEEEEEEEEEEC.....TTSSEEEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfr......eeatklaenlkeGdvvrvtGrvkrr.....pggelelkveeiell 76 
                      V++ Gr+ +++  +g+k++f+d+r +  ++qv++          +++++e l++Gd+v++ G+++r+     +ggel++ ++e+ ll
       KKY15179.1 123 VRIGGRIYTKR-VAGSKLVFYDIRAEGVKVQVMCQAqeasgsVPFEAQHEILRRGDIVGIIGYPGRTapknrEGGELSIFAKEVVLL 208
                      89********9.********************************************************9777666*******99875 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.57
                      HHHHHTTS-TTSEEEEE.EEEEEC CS
  tRNA_anti-codon  39 atklaenlkeGdvvrvt.Grvkrr 61 
                      +++l e+l  G+v  vt G+ +++
       KKY15179.1 352 VMNLTEELVSGMVKHVTgGYRTKF 375
                      567888999999999996666665 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.5e-06     0.021     104     152 ..     317     367 ..     314     389 .. 0.70
   2 !    8.2   0.0   0.00025       1.5     212     233 ..     545     566 ..     528     573 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.5e-06
                   EEEEEEEEBSST-SSSB-SEEEEEEEEEEETT-.-HHHHH.HHHHHHHHHH CS
  tRNA-synt_2d 104 iisigrvfRrdavDathlaeFhqveglvvdenv.sladlk.gvleellkkl 152
                   +  +gr fR++ +D th +eF+ +e+ ++  +v  + +l+  +++ ++k++
    KKY15179.1 317 VYELGRQFRNEGIDLTHNPEFTTCEFYWAYADVyDVMNLTeELVSGMVKHV 367
                   56789*********************9987665233333313344444444 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00025
                   EEEEEEHHHHHHHHHT-SSGHH CS
  tRNA-synt_2d 212 fafGlGveRlamlkygieDiRe 233
                    ++G+G++R++m+ ++   i+e
    KKY15179.1 545 GGWGMGIDRMTMFLTDNYTIKE 566
                   68***********987766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1525  (0.0850577); expected 358.6 (0.02)
Passed bias filter:                      791  (0.0441185); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 3930.40
//
Query:       KKY15180.1  [L=458]
Description: putative cytochrome c oxidase assembly protein cox15 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.2e-102  340.8   2.6   9.1e-102  340.4   2.6    1.0  1  COX15-CtaA  Cytochrome oxidase assembly protein


Domain annotation for each model (and alignments):
>> COX15-CtaA  Cytochrome oxidase assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.4   2.6  5.1e-106  9.1e-102      28     324 .]      46     377 ..      44     377 .. 0.95

  Alignments for each domain:
  == domain 1  score: 340.4 bits;  conditional E-value: 5.1e-106
  COX15-CtaA  28 lsitdWppctGalppltdeeweaefekyketpeykkl.agmtlaefkaiawiEwiHRllgrllGllilvpllyflakkrisrelkkllllllllvglQG 125
                 lsit+W+p+tG+lpp++de+we+ef ky+++pe+++l + mtl+efk+i+++EwiHRl+gr++Gl +++p++yf+a++++s++++ +l+++ +l+g+QG
  KKY15180.1  46 LSITEWKPVTGSLPPMSDEDWESEFTKYRASPEFHLLnSRMTLSEFKQIYYMEWIHRLWGRFVGLSFVLPAIYFVARRKVSSQMAVRLAGISGLIGFQG 144
                 8************************************************************************************************** PP

  COX15-CtaA 126 llGwwmVksgLse.......kprvspyrlaaHLllaflllalllwlalrllake........ae...saeeeaaakklrllallllallllqialGalv 206
                 ++GwwmVksgL++       +prvs+yrl++HL++af+++ ++lw +l++l+ +        a+   s  ++a+ + +++ ++ll +l+++++++G+lv
  KKY15180.1 145 FIGWWMVKSGLKDdlfapgsHPRVSQYRLTTHLGAAFICYLAMLWNGLTILRTNrllrdpsaASsvlSNLSDARLAPFKRSVFLLAVLIFTTAMSGGLV 243
                 ***********99*************************************999999988765226789999**************************** PP

  COX15-CtaA 207 agldAglayntfplmggelipdklplc...........eldwrnlfenpatvqfaHRllAilvllvllllailllrkars.....pklarlavll.aal 288
                 agldAgl+yn+fp+mg +l+p+k +l+           + +wrn++enp++vq++HR+lA+++++++++l +++++ +++     p++a+++v+  +++
  KKY15180.1 244 AGLDAGLIYNEFPKMGLGLTPPKSELFsdfyshrpdksDIWWRNMLENPSLVQLDHRILATTTFTAVMAL-WAYAKYSTTmrsilPRAAKKGVHGvVGF 341
                 ********************************************************************99.5555554446889*88888888877*** PP

  COX15-CtaA 289 lllQvalGistvllavplslavaHqlgaallllalv 324
                 ++lQvalGist+++ vpl+la+aHq+g+++ll+++v
  KKY15180.1 342 AWLQVALGISTLIYLVPLPLASAHQAGSIALLTWTV 377
                 *********************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2923.88
//
Query:       KKY15181.1  [L=599]
Description: putative btb poz domain-containing protein 13 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.09   12.9   0.0       0.79    9.9   0.0    2.2  2  MATH      MATH domain


Domain annotation for each model (and alignments):
>> MATH  MATH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   4.4e-05      0.79       6      47 ..     353     398 ..     348     411 .. 0.88
   2 ?    0.1   0.0     0.047   8.5e+02      54      88 ..     538     574 ..     533     582 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 4.4e-05
        MATH   6 klkegesryskveerfnipWrlkikrkng....flglyLrcnkeee 47 
                 ++ke+++ ys+++ +++  W+l i+r+ +    +lg+yL+ +ke++
  KKY15181.1 353 TVKEKKRIYSQTFWYAGSMWNLYIQRQHTtktqQLGIYLHRAKERD 398
                 5788999999*****************999999*******999854 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.047
        MATH  54 ieveftlklvssngksvkkkdt..hkfekekgwgwgk 88 
                 i++ f++   s+ g+ ++  ++   +f+ +++wgw++
  KKY15181.1 538 IRTYFKIYSPSKAGRMLSVYESapDRFNFKQSWGWKS 574
                 677777777888888877777777999999*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 4049.11
//
Query:       KKY15182.1  [L=416]
Description: putative cytochrome p450 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-64  218.2   0.0    3.4e-50  171.1   0.0    2.0  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   2.9e-16   5.3e-12      83     269 ..       2     186 ..       1     190 [. 0.86
   2 !  171.1   0.0   1.9e-54   3.4e-50     265     456 ..     207     402 ..     199     409 .. 0.91

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 2.9e-16
                 TTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCS..EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHH CS
        p450  83 kgkgvlfangekwkklRrfltptltsfgklsleelveeeaedlveklrkkagess..elditellskaaldvigsilFgarfdlledeklselvkavee 179
                 +g+gvl+a+g+ ++ +R+ l+p++ +  +++l +++ + a +l +kl+++  +s+  e++  +++s+a+ld+ig    g ++d+l+++++  l++   +
  KKY15182.1   2 LGNGVLVAEGDVHRTQRKHLNPAFAFRHIKELYPIFWDKALELNRKLEQHIHSSGsnEIEAGDWVSRATLDIIGLAGTGLEIDSLDTPDN--LLHSSYK 98 
                 589**********************998889**********************9999*******************************85..4444444 PP

                 HHH...HHHCHHHHCCCCCH..HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHH CS
        p450 180 lss...llskssvqllllfp..llkylptkllrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvle 269
                 ++      s+    l ++f+  l + lp k +++l++a k++ ++++ li+ ++ +++++ +s++d +++ l++         +++e+l+ ++++
  KKY15182.1  99 IVLspsRASQILGLLGQFFSprLTSLLPIKRNEELNDASKVARETARDLIQRKKLQIKEKGRSDNDIISVALESG-------FFTEENLVDQMMT 186
                 4321222233344455555447999***********************************99***********94.......6888888888776 PP

  == domain 2  score: 171.1 bits;  conditional E-value: 1.9e-54
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EE CS
        p450 265 atvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtev 363
                  +   +l+aG++Tt+++++waL+ L +nP++q +lr Ei++ l  ++++t + l  lpyl  ++ E+LR++ +vp l+ R +++d++i   +ipkGt++
  KKY15182.1 207 ISSHSFLLAGHETTATAMQWALLILCRNPTIQTRLRSEIHSKLSPSQSMTSELLDALPYLHGFCMEVLRFYAPVP-LTLRIASQDTTILQQFIPKGTVI 304
                 56778**************************************8889****************************.666******************** PP

                 EEEHHHHHT-TTTS.SSTTS--GGGGB-TTS......CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSCSSEEE CS
        p450 364 ivnlyalhrdpevf.pnPeeFdpeRFldekg......nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppileksglllp 455
                 iv+++a++ +++++ p++  F+peR+l+++g         +++fafl F  G++nCiG+++A  e k ++at + + + el + +++ +i  +  ++ +
  KKY15182.1 305 IVSPWAINFSEALWgPDASDFKPERWLNAEGtrpnndGGAKSNFAFLTFLHGAHNCIGQGFAVAEFKALVATWVGYWDTELRDPDEQLDIKAG--VTAK 401
                 **********************************99855699*********************************999999766666666554..5555 PP

                 S CS
        p450 456 p 456
                 p
  KKY15182.1 402 P 402
                 4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 2515.05
//
Query:       KKY15183.1  [L=348]
Description: putative nadph dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-44  151.7   0.0    8.9e-42  143.6   0.0    2.1  2  Oxidored_FMN     NADH:flavin oxidoreductase / NADH oxidase fa
    0.00035   19.8   0.0     0.0025   17.0   0.0    2.0  2  Dus              Dihydrouridine synthase (Dus)
  ------ inclusion threshold ------
       0.16   12.2   0.0       0.39   10.9   0.0    1.7  1  Myb_DNA-binding  Myb-like DNA-binding domain
       0.18   11.7   0.0         11    6.0   0.0    2.4  2  Myb_DNA-bind_7   Myb DNA-binding like


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.1     0.001       4.6       1      18 [.      50      67 ..      50      69 .. 0.93
   2 !  143.6   0.0     2e-45   8.9e-42      94     340 ..      69     326 ..      67     328 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.001
                  CCCS-EEETTEEESSSEE CS
  Oxidored_FMN  1 kLFkPikignmtLknRiv 18
                  kLFkP+ki   +L+nRi 
    KKY15183.1 50 KLFKPLKIRGLELQNRIF 67
                  79**************95 PP

  == domain 2  score: 143.6 bits;  conditional E-value: 2e-45
                   -EEEEEEE--GGGS....SCSTCEC........SS.ESSSSSTTT-...S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHH CS
  Oxidored_FMN  94 skvvvqlwhlGreak..seyladqe......vdspsdpvaldaqee..esaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLln 180
                    k+++ql+h+Gr+    +  la  e         ps   +l a+     ++++  + e+tk++i+ l ++fv A++ra +A fD +eih a+GYLl+
    KKY15183.1  69 QKIMIQLAHAGRKGStvAPWLAASEmateknNGWPS---KLMAPSAipFAEQHATPSEMTKKDIEGLKEAFVAATRRALKARFDAIEIHNAHGYLLH 162
                   6899*****999864222222333333322222233...333332243333333367**************************************** PP

                   HHH-TTT----STTSSSHHHHHHHHHHHHHHHHHHH-SSS.EEEEEECE--STTS--HHHH.......HHHHHHHCHCCEEEEEEETT-SSSSSTTS CS
  Oxidored_FMN 181 qFlspksnkrtDeygGslenRarFllevvdaVkeavgeer.vgyRlSpedvvekgldfaet.......aqkivllkelekrlkdgkklalvhaaepr 269
                   +Flsp sn+rtDeygGs enR r +le+vd+V++ +  ++ ++ R+S++d    +   + +        + + ll+e +++++d++++ + h  ++ 
    KKY15183.1 163 EFLSPVSNRRTDEYGGSFENRTRLTLEIVDSVRKEIPDDMpLFLRVSADDWLSYEGSPFTAswtkedtVKLAPLLAEHGVDFLDVSSGGI-HPSQKI 258
                   ************************************************9866544332222233433488999999*******9999875.555533 PP

                   -TTTTHHHCCTT.HHHHHHCCCHSSEEE..E-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCTC CS
  Oxidored_FMN 270 krgagsvrteqe.kntefvkevwkkpli..tvgriadeekaaeivaegeadLvamgRefladpdlveklkkglp 340
                   k g+      ++  +++ vk+ + + l+  +vg i++ + +a ++  +  d v++gR+f  +p lv + +++l+
    KKY15183.1 259 KGGPS-----YQaPFALAVKKAVGDKLLvsAVGAITSGP-QANALLDEGLDAVFIGRYFQKEPGLVWRFAEELE 326
                   33333.....333667888877765543339********.7888888899******************999887 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.06   2.7e+02     215     269 ..      82     137 ..      78     152 .. 0.77
   2 !   17.0   0.0   5.5e-07    0.0025     137     226 ..     227     322 ..     167     337 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.06
                 HHCCSTTHHHHHHHHHHSC------.HHHHHHHHHHHHHHCHHTTCCCCCCHHHHH CS
         Dus 215 galgnPwlfaestavktgeaepapp.laeeaeiveehlkkleeelgedkglrkirk 269
                 g+   Pwl a++ a +++   p+   + + + ++e+h++  e+ ++  +gl++++ 
  KKY15183.1  82 GSTVAPWLAASEMATEKNNGWPSKLmAPSAIPFAEQHATPSEMTKKDIEGLKEAFV 137
                 66778****985566666666666658888999****9999999999999998875 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 5.5e-07
                 TC.HHHHHHHHHHCT-SEEEEESS..ECCCTT-C..G--CHHHHHHHHH-S..S-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHHH.H CS
         Dus 137 eenalelakiveaaGaqaltvHgR..traqnyeg..tadweaIkevkqavs..ipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlfae.s 226
                 +e++++la  + + G+++l v      + q+ +g    +     +vk+av   + v a G+I++  +a+a l+e G d+v igr  +++P l+ +  
  KKY15183.1 227 KEDTVKLAPLLAEHGVDFLDVSSGgiHPSQKIKGgpSYQAPFALAVKKAVGdkLLVSAVGAITSGPQANALLDE-GLDAVFIGRYFQKEPGLVWRfA 322
                 56667777777777777776654444566666664333333456899999999*********************.***************9986544 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.8e-05      0.39       3      27 ..     224     248 ..     222     250 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.8e-05
                      SSBHHHHHHHHHHHHHHTTCHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhGnrWkkIa 27 
                      +Wt+e+  +L+ ++++hG+++  ++
       KKY15183.1 224 SWTKEDTVKLAPLLAEHGVDFLDVS 248
                      8*****************9987665 PP

>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.019        84      29      56 ..     128     155 ..     123     173 .. 0.84
   2 ?    6.0   0.0    0.0025        11       3      30 ..     217     244 ..     215     249 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.019
  Myb_DNA-bind_7  29 DFsliaklfpkrtrrqlKlKFkkEerkn 56 
                     D + +++ f   trr lK++F+  e +n
      KKY15183.1 128 DIEGLKEAFVAATRRALKARFDAIEIHN 155
                     66667889999**********9766555 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0025
  Myb_DNA-bind_7   3 rkrkktkkWskeetekFYkaLsqfGtDF 30 
                     + +  t +W+ke+t k    L + G DF
      KKY15183.1 217 EGSPFTASWTKEDTVKLAPLLAEHGVDF 244
                     55566899*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 2233.05
//
Query:       KKY15184.1  [L=471]
Description: hypothetical protein UCRPC4_g06410 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.034   14.0   0.1      0.063   13.2   0.1    1.6  1  PcfJ             PcfJ-like protein
       0.12   12.5   2.0       0.36   10.9   1.5    2.0  2  Chalcone_3       Chalcone isomerase-like
       0.22   11.4   5.7       0.72    9.8   5.7    1.8  1  Ax_dynein_light  Axonemal dynein light chain


Domain annotation for each model (and alignments):
>> PcfJ  PcfJ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.1e-05     0.063       5      55 ..     123     175 ..     119     260 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
        PcfJ   5 ylrmlrelgkdlrsekvlcpedlkaaHDklvrkkereeekkrleekkkle..k 55 
                  l+ +r++gkd+++++  +  ++k+ HD++v+++++e  ++++++ + ++   
  KKY15184.1 123 QLDRYRQFGKDYEDRFEQEKSAIKQSHDAEVARIKQEAADEAAAKASSQQdaD 175
                 57889***********************************9999987776551 PP

>> Chalcone_3  Chalcone isomerase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.14   8.1e+02      46     103 ..      75     130 ..      69     139 .. 0.73
   2 ?   10.9   1.5     6e-05      0.36      73     161 ..     129     223 ..      94     226 .. 0.61

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.14
  Chalcone_3  46 ssdaeailaaeekairleilsrdvsseklkkaleegfek..ntaeelaelkariekfkal 103
                 s++a++i++++ + i l+     v s+k++   +  +e+  + +e++++l++++++ +++
  KKY15184.1  75 SAKAQSIVDENPG-ISLND---LVASKKINTDQKAQIERrpALHEQVKSLEQQLDRYRQF 130
                 5667777777765.55543...37889998888888888656789999999999988764 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 6e-05
  Chalcone_3  73 klkkaleegfekntaeelaelkariekfkalfak....evkkgdvitldylpg..kgvvvvvngkqlgtiegedfakAllkiwLGekPadkkLKk 161
                 ++ k +e+ fe+++++ +++ +a+++++k+ +a+    ++ + +  +l +l +     +   n++ +  +eg++f+  llki+ G++ a +++Kk
  KKY15184.1 129 QFGKDYEDRFEQEKSAIKQSHDAEVARIKQEAADeaaaKASSQQDADLLVLTQflHAASSKRNDESTPALEGKAFEGVLLKIYQGSREAIADMKK 223
                 55566666666655555555555555555444321111333333333333333002334456788888********************9999997 PP

>> Ax_dynein_light  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   5.7   0.00012      0.72     114     178 ..      98     160 ..      92     166 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00012
  Ax_dynein_light 114 alqaeqgkselekkikeLeeekeelekqvaelkaklealekrekerrqeeekkheeeieflkksn 178
                      +++++ +k+++e++  +L e++++le+q+   ++  ++ e r+++++++ ++ h+ e++ +k++ 
       KKY15184.1  98 KINTD-QKAQIERR-PALHEQVKSLEQQLDRYRQFGKDYEDRFEQEKSAIKQSHDAEVARIKQEA 160
                      45555.47888888.89*********************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1588  (0.0885716); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.54
# Mc/sec: 2638.83
//
Query:       KKY15185.1  [L=214]
Description: putative 2-haloalkanoic acid dehalogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-06   28.1   0.0    2.7e-06   27.8   0.0    1.2  1  Hydrolase    haloacid dehalogenase-like hydrolase
      6e-06   26.5   0.0      9e-06   25.9   0.0    1.3  1  HAD_2        Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.093   12.8   0.0       0.18   11.9   0.0    1.5  1  Hydrolase_6  Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   4.4e-10   2.7e-06      98     188 ..      60     151 ..       4     172 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 4.4e-10
                 HHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  98 rtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqg 188
                   + + +a+ ++ +     l ++p+a+e++a+L++ g+ v+ lt ++ + ++   +++G d  +++ i+ d ++ akp  ++++ a++++  
  KKY15185.1  60 PRALFTDAERDECIQGYSDLDLRPGAKECFAKLRQEGFTVWCLTTGDIKRVRGYFEKAGvDMPMENFISCDSHGKAKPALDAYRPALNQFAD 151
                 34444588999999999999***************************************777779999999999*********999999953 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.5e-09     9e-06      77     174 ..      78     174 ..      27     176 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.5e-09
       HAD_2  77 evkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagik 174
                  + + +g+ke   +L+++g+++ + T+++ + v+  +e+ g++  ++  ++ +  +k KP+ + ++ al+++  +++e ++   +  D+ aakk+g k
  KKY15185.1  78 DLDLRPGAKECFAKLRQEGFTVWCLTTGDIKRVRGYFEKAGVDMPMENFISCDSHGKAKPALDAYRPALNQFA-DEDEKWFAAAHYWDVSAAKKVGFK 174
                 577889*****************************************************************95.677777778888899999888865 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     3e-05      0.18      15      65 ..      81     128 ..      76     174 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3e-05
                  E-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHHHHHTT----GGGEEE CS
  Hydrolase_6  15 aipgaaealnalraagkpvvllTNnsskseeeyakkleklgvditeeqvvt 65 
                  + pga+e++  lr++g +v++lT +  k  ++y    ek gvd+  e++++
   KKY15185.1  81 LRPGAKECFAKLRQEGFTVWCLTTGDIKRVRGYF---EKAGVDMPMENFIS 128
                  569***********************99977776...56677776666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1364.64
//
Query:       KKY15186.1  [L=550]
Description: putative amino acid transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     6e-116  387.9  43.0   7.5e-116  387.5  43.0    1.0  1  AA_permease    Amino acid permease
    1.3e-36  126.4  44.2    1.6e-36  126.1  44.2    1.1  1  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
       0.17   12.1   3.5       0.55   10.5   3.5    1.8  1  Adeno_E3B      Adenovirus E3B protein


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  387.5  43.0  1.3e-119  7.5e-116       1     474 [.      52     513 ..      52     516 .. 0.97

  Alignments for each domain:
  == domain 1  score: 387.5 bits;  conditional E-value: 1.3e-119
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ial+g iGtglf+g+g +++ aGplga+l+y ++g+ +  v+ ++ge+  ++p +gg   ya+ f +p+l+f+ G+n  +s+++ +++e++aa+
   KKY15186.1  52 HIQMIALAGTIGTGLFLGSGRAIARAGPLGAFLGYSIIGMAVSSVVFAVGEMGALVPLNGGMIRYAEYFFDPALSFANGWNQIYSYLVSIPAEVVAAA 149
                  9************************************************************************************************* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeee 195
                   l++fw    + +   v++++f +++l+  ++ v+vyge ef+++++ki+ ii+  i+  ++ +gg+p+ +  gfr++ ++g  f ++l+ g    + 
   KKY15186.1 150 VLVEFW----ATINNAVWITIFSALMLLTAVLFVRVYGELEFFFSMLKIMLIIGINIMALVITCGGGPSGETiGFRYWRNPGP-FVQYLGIG---GSL 239
                  ******....3333699******************************************************************.66666666...799 PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.aspfvifikesgvsvlapli 292
                  g+f++f   f  ++ a++Gie+++++a+E+k+P+++iP a ++++iri++fYv s++++gl+vp +d++ll +s +a  spfvi+ + +g++v++++i
   KKY15186.1 240 GRFLGFWTTFNNALYAYSGIENITMAAAETKNPRRAIPMAARRIFIRILLFYVVSIFMVGLVVPSDDPNLLHSSGTAsQSPFVIAARRAGIKVIPSII 337
                  9***********************************************************************9999999******************* PP

  AA_permease 293 naviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrf 390
                  nav+lt+a+ss+nss+  +sR+l+ +a+ g+aP++++++++ gvP++ai l  ++ +l+++  s +++  +vf++l  +  +++li+w++i++ ylrf
   KKY15186.1 338 NAVVLTSAWSSGNSSMLGGSRILFGMARHGHAPRIFTRLNRFGVPYVAICLYGVFMCLGYMTLSNTAS--TVFTWLQDLISIATLINWMCICIVYLRF 433
                  ************************************************************66666666..**************************** PP

  AA_permease 391 Rkalkyqgrsi.eelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkr 474
                      k+qg++  +el+  a+++p+++++ la+++i+l + ++  ++      ++w+ ++f+++y++++++li+++g+k+++k+k+
   KKY15186.1 434 IYGCKKQGINRqSELPWAAPFQPYTTWFSLALFTILLFTGGYSTFIH-----GNWDNETFVSSYINIPIILILYFGYKYYAKTKI 513
                  ********864279*********************************.....9*****************************987 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.1  44.2   2.7e-40   1.6e-36       9     402 ..      56     473 ..      49     503 .. 0.77

  Alignments for each domain:
  == domain 1  score: 126.1 bits;  conditional E-value: 2.7e-40
  AA_permease_2   9 lvigsvigsgifvkn..laasggpa.lilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaas 101
                    +++  +ig+g f  +  ++a +gp+ ++l + i+ +++s +v+++  E++++ p +gG++ y++++f + + f ++w + ++y++++++  +vaa+
     KKY15186.1  56 IALAGTIGTGLFLGSgrAIARAGPLgAFLGYSIIGMAVS-SVVFAVGEMGALVPLNGGMIRYAEYFFDPALSFANGWNQIYSYLVSIPA-EVVAAA 149
                    6677789******999999999*9977777778888885.9**********9*********************************9977.567888 PP

  AA_permease_2 102 yllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl......stetdt.......ffp 184
                     l+ +++ ++  n+  ++ i++a+++l+a++    ++ ++ + ++   lki +++i + i +l++ +ggg s +      +    +          
     KKY15186.1 150 VLVEFWA-TI--NNAVWITIFSALMLLTAVL---FVRVYGELEFFFSMLKI-MLIIGINIMALVITCGGGPSGEtigfryW---RNpgpfvqyLGI 235
                    9999997.44..6677888889***999998...999**************.78888888889999999998776664431...333332222222 PP

  AA_permease_2 185 ngwpgv....llgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsv....aalffeavggk 270
                    +g+ g     + ++  +l++++G+e+++  + e k+  + +p+a+  +++ +l++y++  + +  vvp d  + l+++g++    + + ++++g k
     KKY15186.1 236 GGSLGRflgfWTTFNNALYAYSGIENITMAAAETKNprRAIPMAARRIFIRILLFYVVSIFMVGLVVPSDDPNLLHSSGTAsqspFVIAARRAGIK 331
                    3444323333667777*****************8888467*******************999999****999776665543334499********* PP

  AA_permease_2 271 vvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas..saaynfllsvsslgliisyll 364
                    v  +i+++++  s++ ++n+ ++g sr+l+ +ar+g  Pr f + n+fg p++ai+l  ++ ++ ++ ++  +  s+ +++l ++ s++ +i ++ 
     KKY15186.1 332 VIPSIINAVVLTSAWSSGNSSMLGGSRILFGMARHGHAPRIFTRLNRFGVPYVAICLYGVFMCLGYMTLS--NtaSTVFTWLQDLISIATLINWMC 425
                    *************************************************************999886555..3459*********99987766666 PP

  AA_permease_2 365 liigal..ilrkkrphlkr....pgk....ilvaiigalfllfllval 402
                    + i +l  i+  k+   +r    p++    + ++++++ ++++ll+++
     KKY15186.1 426 ICIVYLrfIYGCKKQGINRqselPWAapfqPYTTWFSLALFTILLFTG 473
                    644444315555555557778995552333334444433333333332 PP

>> Adeno_E3B  Adenovirus E3B protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.5   9.3e-05      0.55       9      52 ..     386     433 ..     382     443 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.3e-05
   Adeno_E3B   9 ippftvyllygfvtlilicslvtv....viafiqfidwvcvriaylrh 52 
                 i  + v++  g++tl    s v      +i++  +i+w+c+ i ylr 
  KKY15186.1 386 ICLYGVFMCLGYMTLSNTASTVFTwlqdLISIATLINWMCICIVYLRF 433
                 5568899999****999988774323336888899***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3979.97
//
Query:       KKY15187.1  [L=512]
Description: putative fad dependent oxidoreductase superfamily [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-45  154.6   0.3      6e-45  154.4   0.3    1.1  1  DAO            FAD dependent oxidoreductase
    5.8e-07   29.1   0.0      0.032   13.5   0.0    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    1.1e-05   25.6   0.1    3.3e-05   24.0   0.1    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    7.1e-05   22.1   0.0    0.00019   20.8   0.0    1.6  1  Thi4           Thi4 family
     0.0015   17.4   0.0     0.0021   17.0   0.0    1.2  1  MCRA           MCRA family
     0.0027   17.7   0.1      0.027   14.4   0.1    2.3  2  NAD_binding_9  FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.013   14.7   0.0      0.023   13.9   0.0    1.5  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      0.069   13.6   0.2       0.75   10.3   0.0    2.5  3  Toprim_4       Toprim domain


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.4   0.3   2.7e-48     6e-45       1     351 [.      72     464 ..      72     465 .. 0.74

  Alignments for each domain:
  == domain 1  score: 154.4 bits;  conditional E-value: 2.7e-48
                 EEEEECTSHHHHHHHHHHHHTT......EEEEESSSSTTSSGGGSSEEEEESSS....STHHSTH...........HHHHHHHHHHHHHHHHHHHHSST CS
         DAO   1 dvviiGGGiiGlstAyeLarrg......VtllekgdiagsgaSgrnsgllhsgl....rylpeas...........elarlslealeelreleeelgid 78 
                 d++iiG+G +G+stAy+L + +      +t+le++  a+sga+grn+g+l++ l          +           e+a++  e l+e +++ ee++id
  KKY15187.1  72 DILIIGAGHTGISTAYHLVKDPrnanktITILEAR-AACSGATGRNGGHLRPDLyghiP-----TyidragveaaaEIAEFEIENLREVKKVIEEENID 164
                 8*****************998667889********.7777************9944440.....2456667778889************8888889*** PP

                 TSEEEEEEEEEESSHHHHHHHHHHHHHH.................HHTTTTE.EEEEHHHHHHHSTTSTTTSEE..EEETTEEEEEHHHHHHHHHHHHH CS
         DAO  79 idyrrtGllslaadeeelealdkllall.................leaglda.elldaeevrelepalpgllga..lfypdtgqvdpakltaalaraae 157
                 +d+    ++ +  ++e   + ++ +++                   + g+ a   +++  ++ ++  ++g++ga  + ++++g v p+kl   l + + 
  KKY15187.1 165 CDFALHRTIDVWCNAEAAKKAKAVYDQMvahkleymndvvfytekDAEGVSAaDRIEKTMLNSRQ--ISGVKGAkaCTSYTAGSVWPYKLFLHLVQLIL 261
                 **********9756544444544444444544554455555544333344322344443333333..23666666599999****************65 PP

                 HTT.-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE.EEETTTT CS
         DAO 158 alG.veilegtevtgleeedgkvwgverttp.gendaadavVnaaGawsd.llgllkeldlpispvrgqvlvlkplseklvspaailpvpe.tdddgrg 252
                 + G  ++ ++t+vt++ ++ +++  v  +tp g ++ a ++V a++ +++ ll   +e ++ i p +g  +++  ++e + +p  + + ++ +++d++ 
  KKY15187.1 262 KTGqTNFQTYTPVTSIIQDPNGGFVV--ETPrGKTH-ASKIVHATNGYVGgLL---PEYKKNIIPSKGICCRI-AVPEGTPAPL-LNNSYInRTEDNTL 352
                 55549**********84433454666..99999875.599********99888...8889999**********.5555444443.22222358888888 PP

                 EEEEEETTSEEEEEESSE........EETTCSSTSCSHHHHHHHHHHHHHHSGG..G..CGEEEEEEEEEEE.TTSSEEEEEEETEEEEEEEEECTTTH CS
         DAO 253 vyvtprkdgrvlvGgtad........eesgdddpevdeedidellealrklfPq..l..gdvlrkwaGlrpl.pdglpligetpgvkglylatGhsghG 338
                  y+++r+dg+++vGg a         +  + dd    +++ d++ +++++ + +  +  ++v + w+G++    d  p ig  p+ ++ y+a+G++ghG
  KKY15187.1 353 SYLIARADGSIVVGGAAAkfrqfrdqWYNNVDDSVLIDAAKDYYDDYMQRTYRGweKtgAKVDKIWTGVMGYsYDSHPHIGAIPKKPNQYIAAGFNGHG 451
                 9************99988777666554444444333344666677777777755542458899********648********99999************ PP

                 HHHHHHHHHHHHH CS
         DAO 339 ltlapatGkllae 351
                 +   ++ +k la 
  KKY15187.1 452 MPVIWLGAKGLAR 464
                 ******9999986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.7e-05     0.039     154     239 ..      61     149 ..      49     174 .. 0.73
   2 !   13.5   0.0   1.4e-05     0.032      88     134 ..     258     305 ..     250     315 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
  Pyr_redox_3 154 skvkefhkyagqkvvViGgknSavDaAlelvrk....gaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeik 239
                  +  +e    ++ ++++iG++ +++ +A++lv+     ++++t++  ++  +    +   +l+pd    + +++++  ++++ +    ei+
   KKY15187.1  61 HRSTES-LPEHSDILIIGAGHTGISTAYHLVKDprnaNKTITILEARAACSGATGRNGGHLRPDLYGHIPTYIDRAGVEAAAEIAEFEIE 149
                  333333.357899******************976666999*******999999999999******9999999997434443333222333 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.4e-05
  Pyr_redox_3  88 revaksfelpiklfeeVesvkk.edegfevetsketyeAkkviiAtGe 134
                  + + k+ + + ++++ V+s+ +  ++gf+vet +++ +A+k++ At  
   KKY15187.1 258 QLILKTGQTNFQTYTPVTSIIQdPNGGFVVETPRGKTHASKIVHATNG 305
                  5677888999*********99856899******************954 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   1.5e-08   3.3e-05       1      35 [.      75     113 ..      75     134 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.5e-08
                    EE--SHHHHHHHHHHHCC....TEEEEEE-SSSSSSGGG CS
  NAD_binding_8   1 IvGaGlsGlvaAylLaka....gfdvlllekrdrlGGra 35 
                    I+GaG +G ++Ay+L k+    ++ +++le+r  ++G  
     KKY15187.1  75 IIGAGHTGISTAYHLVKDprnaNKTITILEARAACSGAT 113
                    9***************955556999*********99953 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   8.4e-08   0.00019      17      61 ..      70     118 ..      61     125 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 8.4e-08
                 EEEEEEE--SHHHHHHHHHHHHCT...TS-EEEEESSSS--TTTTT.TS CS
        Thi4  17 esDvvivGaGssGLtaayylakkp...dlkvailersvspGGGawl.GG 61 
                  sD++i+GaG +G+++ay l k+p   +  ++ile++ +  G ++  GG
  KKY15187.1  70 HSDILIIGAGHTGISTAYHLVKDPrnaNKTITILEARAACSGATGRnGG 118
                 58*******************98633366799*******9998874144 PP

>> MCRA  MCRA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   9.2e-07    0.0021       4      46 ..      73     115 ..      70     161 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 9.2e-07
                 EEEE--SHHHHHHHHHHHHTT---GGGEEEE-SS--------- CS
        MCRA   4 aylvGsGiasLaaAvyLirdakvpgenihileelkvaggsldg 46 
                 + ++G+G +++++A++L++d +   + i+ile+ +   g++ +
  KKY15187.1  73 ILIIGAGHTGISTAYHLVKDPRNANKTITILEARAACSGATGR 115
                 679******************************9988887655 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   1.2e-05     0.027       2      39 ..      75     111 ..      74     119 .. 0.87
   2 ?    0.2   0.0       0.3   6.6e+02     121     153 ..     271     303 ..     252     306 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.2e-05
  NAD_binding_9   2 ivGaGprGlavlerLlarakkkspleitlfdpsepgag 39 
                    i+GaG +G++++ +L++   + ++ +it+ + + + +g
     KKY15187.1  75 IIGAGHTGISTAYHLVKDP-RNANKTITILEARAACSG 111
                    9*****************6.999999***999776544 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.3
  NAD_binding_9 121 raevvdleeradgqavlladgaslaadaVvLAl 153
                     + v+++ ++++g  v+++   +++a ++v A+
     KKY15187.1 271 YTPVTSIIQDPNGGFVVETPRGKTHASKIVHAT 303
                    568999999999987777777777777766665 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     1e-05     0.023       2      35 ..      72     109 ..      38     194 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1e-05
                  SEEEE--SHHHHHHHHHHHH....HTS-EEEEETTHCH CS
                  xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq....agakvtlvelegtc 35 
                  d+++iG+G+ G+++a +l +    a+  +t++e++ +c
   KKY15187.1  72 DILIIGAGHTGISTAYHLVKdprnANKTITILEARAAC 109
                  56666666666666666666665556666666533333 PP

>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       7.3   1.6e+04      66      77 ..      81      92 ..      70     103 .. 0.62
   2 ?   -0.2   0.0      0.63   1.4e+03      64      77 ..     133     147 ..     129     159 .. 0.74
   3 ?   10.3   0.0   0.00033      0.75      40      79 ..     185     225 ..     177     233 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 7.3
    Toprim_4 66 eGeataerlael 77
                 G  ta +l+++
  KKY15187.1 81 TGISTAYHLVKD 92
                566677776664 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.63
    Toprim_4  64 DaeGeataerlae.l 77 
                 D +G ++a ++ae +
  KKY15187.1 133 DRAGVEAAAEIAEfE 147
                 899******999953 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00033
    Toprim_4  40 eklktenlve.aekkvkevilaldgDaeGeataerlaelll 79 
                 +k  ++++v+ +++ ++ v++ ++ DaeG  +a+r+ +++l
  KKY15187.1 185 AKAVYDQMVAhKLEYMNDVVFYTEKDAEGVSAADRIEKTML 225
                 4444566666788889********************99554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.47
# Mc/sec: 3259.57
//
Query:       KKY15188.1  [L=521]
Description: putative atp synthase beta [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-61  208.3   0.0    1.7e-61  207.6   0.0    1.4  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    9.6e-22   77.3   1.5    2.7e-21   75.9   1.5    1.8  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do
     0.0069   16.3   0.6       0.03   14.2   0.0    2.2  3  RsgA_GTPase    RsgA GTPase
     0.0078   16.1   1.1      0.041   13.7   1.1    2.1  1  T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
  ------ inclusion threshold ------
       0.01   16.2   0.1       0.77   10.2   0.0    2.7  2  AAA            ATPase family associated with various cellular
      0.011   14.9   0.3      0.083   12.1   0.1    2.1  2  NB-ARC         NB-ARC domain
       0.02   14.8   0.0       0.05   13.5   0.0    1.6  2  ATPase_2       ATPase domain predominantly from Archaea
      0.038   13.3   0.1       0.07   12.5   0.1    1.4  1  ATPase         KaiC
      0.041   14.2   1.0       0.48   10.7   0.2    2.3  2  AAA_19         AAA domain
       0.05   13.5   0.1       0.13   12.2   0.0    1.7  2  NACHT          NACHT domain
      0.079   13.4   0.0       0.17   12.3   0.0    1.6  1  RNA_helicase   RNA helicase
       0.12   12.7   0.1       0.52   10.7   0.1    2.1  1  AAA_16         AAA ATPase domain


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.6   0.0   1.1e-64   1.7e-61       1     213 []     177     395 ..     177     395 .. 0.96

  Alignments for each domain:
  == domain 1  score: 207.6 bits;  conditional E-value: 1.1e-64
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSS..EEEEEEESEEHHHHHHHHHHCHHSS.....GGGGEEEEEEETTS-HHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsdd..aiiyvgiGergnevaevleefpegt.....imkrtvlvantsnepvaareasiy 91 
                  Gi+v+D+l p+++G++++++g++gvGktv +q+l+++  +++  ++++ g+Ger++e +++++e++e++       +++ lv+ ++nep+ ar ++++
   KKY15188.1 177 GIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHggYSVFTGVGERTREGNDLYHEMQETSviqldGESKVALVFGQMNEPPGARARVAL 274
                  99*********************************998887457***********************7644344667********************* PP

                  HHHHHHHHHHH.TTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCSTTSHHHHHHHHHSS CS
                  xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  92 tgitlAEyfrd.qgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggDfsdpvttatlgitd 188
                  tg+t+AEyfrd +g++vll++d+++r+++A  e+s++lg++p++ gy+++l+ ++  ++ER++++  ++Gs+t+v+av+++++D++dp + +t++++d
   KKY15188.1 275 TGLTVAEYFRDeEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLAVDMGGMQERITTT--QKGSITSVQAVYVPADDLTDPAPATTFAHLD 370
                  ***********9*****************************************************..88***************************** PP

                  EEEEB-HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 189 gfivLdkklaqrkhfPainvlvSvS 213
                  +++vL++ + + +++Pa+++l S S
   KKY15188.1 371 ATTVLSRGISELGIYPAVDPLDSKS 395
                  *********************9987 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   1.5   1.8e-24   2.7e-21       1      69 []      53     120 ..      53     120 .. 0.96

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 1.8e-24
                    EEEEETTEEEEESSTSCETCTTEEEEECCET.CSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEES CS
  ATP-synt_ab_N   1 ivqviGpvvdvefgigrlpgiynalevelve.fgtlllgvalnlgedkVrvivmgstdGlsrGteVkrTG 69 
                    i qviG+vvdv+f ++ lp+i+nale++  + +++l+l+va++lge++Vr+i+m++t+Gl+rG+e  +TG
     KKY15188.1  53 IHQVIGAVVDVKFNSETLPEILNALETQ--NgGQKLVLEVAQHLGEGVVRTIAMDGTEGLVRGHEALDTG 120
                    67**************************..7468899********************************9 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.1   1.6e+03      21      53 ..      56      88 ..      31     101 .. 0.77
   2 !   14.2   0.0     2e-05      0.03      90     156 ..     181     247 ..     161     257 .. 0.86
   3 ?   -3.4   0.0       5.3   7.9e+03      43      63 ..     420     440 ..     409     467 .. 0.52

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.1
                 EEEESTTTT--HHHHHHHHHHHHHTT-EEEEEE CS
  RsgA_GTPase 21 ivvslkepelslnlldrfLvlaeekgiepvivl 53
                 ++ ++++ ++++++l  +L ++e+++    +vl
   KKY15188.1 56 VIGAVVDVKFNSETLPEILNALETQNGGQKLVL 88
                 667888899999999999999999887766666 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2e-05
                  HHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTEEEE CS
  RsgA_GTPase  90 leelkellkdktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaegglli 156
                  ++ l+++ ++  + l G  GvGK+ +i +l+++   + g  s  +g G  T     l++  +++ +i
   KKY15188.1 181 VDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGYSVFTGVGERTREGNDLYHEMQETSVI 247
                  5667888888888899***********************************9999999987777776 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 5.3
                  HHTT-EEEEEEE-GGG--HHH CS
  RsgA_GTPase  43 eekgiepvivlnKiDlleeee 63 
                  e k ++ +i++  +D l+e++
   KKY15188.1 420 EYKSLQDIIAILGMDELSEAD 440
                  334444445555555554444 PP

>> T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   1.1   2.7e-05     0.041       2      57 ..     404     458 ..     403     471 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.7e-05
  T3SS_ATPase_C   2 spehlqaarklrellatyqenedLiniGaYkkGsd..pelDe.AiakrpainafLkQgv 57 
                     +eh+q a+++ ++l+ y++ +d+i i     G d  +e D+  +++  +i++fL Q+ 
     KKY15188.1 404 GDEHYQTATRVQQMLQEYKSLQDIIAI----LGMDelSEADKlTVERARKIQRFLSQPF 458
                    68***********************99....4444335566535777777777777765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00052      0.77       3      74 ..     195     305 ..     193     316 .. 0.61
   2 ?    2.9   0.1     0.093   1.4e+02      40      74 ..     408     440 ..     392     463 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00052
                 EESSTTSSHHHHHHHHHHHH.....THE.......................EEEEETTTCSSS..................STTHHHHHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakel.....gve.......................fleisgsellsk..................yvgesekkirelfkeake 55 
                 l+G  G+GKT +++ +++++     g +                       +++++g     +                   v  +   ++e+f++ +e
  KKY15188.1 195 LFGGAGVGKTVFIQELINNIakahgGYSvftgvgertregndlyhemqetsVIQLDG-----EskvalvfgqmneppgaraRVALTGLTVAEYFRD-EE 287
                 89*****************64333312233444444444444434433333333333.....1445557777777777777777777778888877.44 PP

                 TSTSEEEEEETGGGHHHHH CS
         AAA  56 kakpsilfiDEidalaksr 74 
                  +  + lfiD+i +++++ 
  KKY15188.1 288 GQ-DVLLFIDNIFRFTQAG 305
                 43.5888888887776655 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.093
                 THHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH CS
         AAA  40 gesekkirelfkeakekakpsilfiDEidalaksr 74 
                  +++ +++++++e k+ +   i+ i  +d+l +++
  KKY15188.1 408 YQTATRVQQMLQEYKSLQ--DIIAILGMDELSEAD 440
                 57889999*****99998..455544444444433 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   5.5e-05     0.083      23      57 ..     193     227 ..     180     262 .. 0.83
   2 ?    0.3   0.0      0.22   3.3e+02       6      28 ..     412     433 ..     407     459 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.5e-05
                 EEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEE CS
      NB-ARC  23 valvGmgGvGKttlakqilnksdevegrFdsvawv 57 
                 ++l G +GvGKt+ +++ +n+ ++ +g + ++  v
  KKY15188.1 193 IGLFGGAGVGKTVFIQELINNIAKAHGGYSVFTGV 227
                 799******************99999999887655 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.22
                 HHHHHHHHCTTTSCSEEEEEEES CS
      NB-ARC   6 ekviekLlekdelqslvvalvGm 28 
                  +v++ L e ++lq +++a+ Gm
  KKY15188.1 412 TRVQQMLQEYKSLQ-DIIAILGM 433
                 57777777777777.77777777 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.3e-05      0.05      25     136 ..     195     307 ..     190     323 .. 0.68
   2 ?   -3.2   0.0       4.2   6.3e+03     125     138 ..     434     447 ..     413     481 .. 0.51

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.3e-05
    ATPase_2  25 iYGpegsGKtaLlkeiienl.edkdkyviyyialreesiskldefie.eeeekkklekalgiavpkaeleeilkeksklvfkaielllekikkkgkkii 121
                 ++G  g+GKt +++e+i+n  + ++ y ++    ++ ++ +     e +e ++ +l+   + a+   +++e    + + +   ++ +     ++g+ + 
  KKY15188.1 195 LFGGAGVGKTVFIQELINNIaKAHGGYSVFTGVGERTREGNDLYH-EmQETSVIQLDGESKVALVFGQMNEPPGARARVALTGLTVAEYFRDEEGQDVL 292
                 6999****************6777779999887777666553333.22344444444433333322233333335667777777777777788888899 PP

    ATPase_2 122 iiiDelqklidlgln 136
                 ++iD +++  + g++
  KKY15188.1 293 LFIDNIFRFTQAGSE 307
                 999999998876665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.2
    ATPase_2 125 Delqklidlglnga 138
                 Del ++ +l++++a
  KKY15188.1 434 DELSEADKLTVERA 447
                 33333333333322 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   4.7e-05      0.07       3      70 ..     176     244 ..     174     273 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.7e-05
      ATPase   3 tgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepa...edlrenaksl 70 
                 tgI+  D +    + +g  + + G++G GKt+f ++ + + a+  g   vf  v e+    +dl++++++ 
  KKY15188.1 176 TGIKVVDLLA--PYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGYSVFTGVGERTregNDLYHEMQET 244
                 7888888775..788999999***********************************998888888888765 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00032      0.48       9      38 ..     189     218 ..     183     227 .. 0.84
   2 ?    1.5   0.0      0.23   3.5e+02      68     118 ..     362     443 ..     328     453 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00032
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelg 38 
                 + + + + +G+G GKT  +++ ++ + +++
  KKY15188.1 189 RGGKIGLFGGAGVGKTVFIQELINNIAKAH 218
                 56678899**************99988776 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.23
      AAA_19  68 eatTiHrlal..................................ldfddlltealelleeaeeekklqeee.llivDEfqdvdelq 118
                 +atT+ +l                                        ++ t   ++l+   e k lq+   +l  DE ++ d+l 
  KKY15188.1 362 PATTFAHLDAttvlsrgiselgiypavdpldsksrmldprivgdE-HYQTATRVQQMLQ---EYKSLQDIIaILGMDELSEADKLT 443
                 377777665567777777777777777777777777777765531.2223333444444...455666666688899999998665 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.6e-05      0.13       6      28 ..     196     218 ..     193     266 .. 0.85
   2 ?   -3.2   0.0       4.8   7.1e+03      54      77 ..     424     447 ..     411     461 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.6e-05
                 EC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT   6 qGeaGsGKTtLlqklalawaegk 28 
                  G aG+GKT+++q+l+  +a+ +
  KKY15188.1 196 FGGAGVGKTVFIQELINNIAKAH 218
                 699*****************988 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.8
                 HCHHHCCCCTS--SSS-CCHHHHC CS
       NACHT  54 ladllfsqlpepaapvsevwavll 77 
                 l+d+++  + ++ ++ ++  ++++
  KKY15188.1 424 LQDIIAILGMDELSEADKLTVERA 447
                 444444444444444444333333 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00012      0.17       3      26 ..     195     218 ..     193     253 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl 26 
                   l+G +g+GK+++++eL+++++k+ 
    KKY15188.1 195 LFGGAGVGKTVFIQELINNIAKAH 218
                   89*******************776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00035      0.52      27      62 ..     193     230 ..     179     325 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00035
      AAA_16  27 vllsGesGvGKsslvrellralekdggif..lrgkcdq 62 
                 + l G +GvGK+  ++el + + k++g +  ++g  ++
  KKY15188.1 193 IGLFGGAGVGKTVFIQELINNIAKAHGGYsvFTGVGER 230
                 557899**************999996444234443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 3380.67
//
Query:       KKY15189.1  [L=698]
Description: putativealpha-glucan branching enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-25   87.7   0.0    1.2e-24   86.6   0.0    1.6  1  Alpha-amylase_C  Alpha amylase, C-terminal all-beta domain
    2.2e-18   66.4   0.0    5.8e-18   65.0   0.0    1.8  1  CBM_48           Carbohydrate-binding module 48 (Isoamylase N
    2.3e-14   53.7   0.1      1e-10   41.7   0.1    2.3  2  Alpha-amylase    Alpha amylase, catalytic domain


Domain annotation for each model (and alignments):
>> Alpha-amylase_C  Alpha amylase, C-terminal all-beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.0     2e-28   1.2e-24       1      94 [.     600     693 ..     600     695 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.6 bits;  conditional E-value: 2e-28
                      EEEEEETTSSEEEEEECTTTEEEEEEE-SSSSEEECEEESSSSSEEEEETTCTTSGCCTTT-.SSTSS-EEEECT..TCBSEEEEEEESTTEEE CS
  Alpha-amylase_C   1 wvsakdeenkviaFeRgdgekllvvfNfhpsnsrqdyrvgvpaagkyrdvlntdaeeyggsg.lgntgkvvtvdd..dgransltltlpprsal 91 
                      ++s k+e +kv++FeR +   ll +fNfhps+s++dyrvgv+++g+yr +l+td+ +ygg g + ++++++t+d   ++r+n+ ++++p+r+al
       KKY15189.1 600 YISLKNETDKVLVFERAG---LLWIFNFHPSQSFTDYRVGVEQEGTYRIILDTDDPAYGGLGrNAKDTRFFTTDFtwNNRKNFTQVYIPSRTAL 690
                      7999**************...*****************************************9999999****9999***************** PP

                      EEE CS
  Alpha-amylase_C  92 vlk 94 
                      vl 
       KKY15189.1 691 VLG 693
                      *95 PP

>> CBM_48  Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   9.8e-22   5.8e-18       1      83 [.      70     154 ..      70     155 .. 0.96

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 9.8e-22
                 TSEEEEESSCEEEEEEEE-TTSSEEEEEECGTTTEEECCB-EEECGGCEEEEEEET.....TSTTTT.EEEEEEEETTSCEEEE--TT CS
      CBM_48   1 plGahvsedekgvnfrvwapnAekVslvldfnnwdaeeiplkrrrtggvWelflpg.....dlphgslrYkyrvkgpsgekklllDPy 83 
                 ++G++vs++ +++++r+wapnAe++ l++dfn+wd +++p++ ++ +gv+e++lp+     ++ph+s + k+ + +p+ge+  +++++
  KKY15189.1  70 KFGFNVSDN-NDITYREWAPNAEQAFLIGDFNGWDRNATPMT-KNMFGVFEVTLPAkhgqpAIPHDS-KLKISMIVPGGERIERIPAW 154
                 69****987.9*******************************.69*********************8.*****************999 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.1   1.7e-14     1e-10      12      80 ..     223     292 ..     218     317 .. 0.91
   2 !    9.8   0.0   8.6e-05      0.52     143     185 ..     323     383 ..     298     486 .. 0.63

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 1.7e-14
                    CCCCCT-SCEEE-B-CE.-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TT CS
  Alpha-amylase  12 YlkeLGvtaiwlsPifk.spqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsde 80 
                     +  LG ++i l  +++ + +a +gY ++ + +   ++Gt +dl eLi+ ah++gi v+lD+V  H s++
     KKY15189.1 223 RISYLGYNVIQLMAVMEhAYYASFGYQVNSFFAASSRYGTPDDLRELIDTAHSLGITVLLDVVHSHASKN 292
                    57789**********99777899********************************************986 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 8.6e-05
                    BB-TTTCCCCCCCCCCCCCCCTTT.-SEEEETTCCCTTT.CCCC................H CS
  Alpha-amylase 143 dLnteneevrkelkdvvkfwlekg.idGfRlDvvkhvsk.veal................e 185
                     +n+ n ev + l   ++fw+e+   dGfR D v  +   ++++                +
     KKY15189.1 323 LFNYGNHEVLRFLLSNLRFWMEEYqFDGFRFDGVTSMLYtHHGIgtgfsggyheyfgpgvD 383
                    478999***************9988*******88765440233355555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.35s 00:00:01.06 Elapsed: 00:00:00.55
# Mc/sec: 3822.58
//
Query:       KKY15190.1  [L=616]
Description: putative atp-dependent clp protease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-38  130.2   0.0    1.4e-36  126.2   0.0    2.6  1  AAA_2            AAA domain (Cdc48 subfamily)
    3.6e-15   56.6   0.0    7.2e-15   55.6   0.0    1.5  1  AAA              ATPase family associated with various cellul
    1.8e-07   31.1   0.0    4.4e-07   29.9   0.0    1.6  1  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    8.3e-07   29.1   0.0    1.8e-06   28.0   0.0    1.6  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00015   21.2   0.0      0.017   14.5   0.0    3.1  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
    0.00046   19.9   0.0       0.03   14.0   0.0    2.3  2  Sigma54_activat  Sigma-54 interaction domain
     0.0017   18.6   0.1      0.017   15.4   0.1    2.3  1  AAA_22           AAA domain
     0.0023   18.4   0.1     0.0085   16.5   0.1    2.0  1  AAA_16           AAA ATPase domain
     0.0039   17.0   0.3      0.061   13.1   0.0    2.3  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0061   15.7   0.1      0.011   14.8   0.1    1.4  1  MCM              MCM P-loop domain
     0.0066   16.2   0.0      0.015   15.0   0.0    1.5  1  IstB_IS21        IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.017   14.9   0.0      0.026   14.3   0.0    1.3  1  AAA_24           AAA domain
      0.032   14.6   0.0        0.2   12.1   0.0    2.1  2  RNA_helicase     RNA helicase
       0.04   13.4   0.0      0.072   12.6   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
       0.05   13.6   0.0       0.48   10.4   0.0    2.2  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.052   13.4   0.0       0.12   12.3   0.0    1.6  1  AAA_3            ATPase family associated with various cellul
      0.057   13.6   1.1        1.5    9.0   0.0    2.5  2  AAA_33           AAA domain
      0.066   13.8   1.0       0.28   11.8   0.0    2.3  2  AAA_18           AAA domain
       0.11   12.5   0.0       0.24   11.4   0.0    1.6  1  AAA_14           AAA domain


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.2   0.0   1.5e-39   1.4e-36       3     169 ..     181     459 ..     179     461 .. 0.94

  Alignments for each domain:
  == domain 1  score: 126.2 bits;  conditional E-value: 1.5e-39
                 ---EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----.---------HHHH CS
       AAA_2   3 iisilllgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrligappgyvgaeegGivllDEidKihpk.essgadvSregVq 96 
                 +++illlgp+gvGkt++ak+la++l+v    ++ ++d++ +++    +e++e  v rl+ a++++v+++e+Gi+ lDEidKi+    s g+dvS+egVq
  KKY15190.1 181 KSNILLLGPSGVGKTLMAKTLARVLDV----PFSMSDCTPFTQagyiGEDAEVCVHRLLSAANYDVAKAERGIICLDEIDKIATArVSHGKDVSGEGVQ 275
                 79************************8....*****************************************************99************* PP

                 HHHHHHHH--EE-........................................----..--EE-TT-EEEEEE--TTHHHHTTTS-S............ CS
       AAA_2  97 rdLLqileggtlt........................................dkqg..rkvdtknilfImtgafgsskisdesrsk............ 141
                 ++LL+i+eg+t++                                        +++g   +v+t+nilfI+tgaf +  +   +r++            
  KKY15190.1 276 QALLKIIEGTTIQvqakpernapraggqsnpfptngplggpsftqspagssasPAKGevYNVRTDNILFIFTGAFTGLPKVVMDRISkgslgfgqtvrs 374
                 *****************************************************55554789****************999999998899********** PP

                 .........................................................TTTTSGGG--HHHHHHTT--HHHHTT-- CS
       AAA_2 142 .........................................................eeeeekkkeeveeelkkglipEllgRlp 169
                                                                          +  +     +++++ ++g+ipEl+gR+p
  KKY15190.1 375 ksslqfsssavnspqssdpipilpgseeealykkhlpyfqphtahasysvshtadepQYFNALDLLTPTDLQSYGFIPELIGRIP 459
                 ***************************************************9988654445555667889999***********9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   7.6e-18   7.2e-15       1      98 [.     184     287 ..     184     310 .. 0.87

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 7.6e-18
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTS....TSEEEEEETGGGHHHHH.TTCCCHHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsell.skyvgesekkirelfkeakeka....kpsilfiDEidalaksr.sgseseeeervvnqLltel 93 
                 +ll Gp G+GKTl+ak +a+ l+v+f   +++ ++   y+ge ++   + + +a +      +  i+ +DEid++a++r s++++ ++e v+++Ll+ +
  KKY15190.1 184 ILLLGPSGVGKTLMAKTLARVLDVPFSMSDCTPFTqAGYIGEDAEVCVHRLLSAANYDvakaERGIICLDEIDKIATARvSHGKDVSGEGVQQALLKII 282
                 69*********************************777***99887666555553333466566***************99999*************** PP

                 HHTTT CS
         AAA  94 dgvkk 98 
                 +g + 
  KKY15190.1 283 EGTTI 287
                 *9886 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   4.7e-10   4.4e-07       1      66 [.     467     536 ..     467     545 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 4.7e-10
                    SCHHHHHHHHHH...HHHHHHHHSCT.TTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHH CS
  ClpB_D2-small   1 LtkeelkkIvdl...alkklekrlke.rgvelevtdealdalaekgydpeyGARpLrriiqreiedplae 66 
                    Lt++ l +I+++    l  ++  l +  g+el +t  al  +a+++  + +GAR+Lr+ ++r + d+++e
     KKY15190.1 467 LTHSLLLRILTEprsSLVSQYITLFSlSGIELRFTTPALHVVASNALTMGTGARGLRTEMERILGDAMFE 536
                    677889999999999999999999998*****************************************98 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.9e-09   1.8e-06       1      79 [.     183     260 ..     183     265 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.9e-09
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------......G-SEEEEESGGG--H CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar......egeilvlDEveraes 79 
                 ++lL+Gp+G+gK+ +a+ la++l  ++ +  +t +t++  +    e+   ++ l+      aa+      e  i++lDE++++ +
  KKY15190.1 183 NILLLGPSGVGKTLMAKTLARVLDVPFSMSDCTPFTQAGYIGEDAEV-CVHRLLS------AANydvakaERGIICLDEIDKIAT 260
                 689***********************************999999998.3333333......444444446999********9875 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.47   4.4e+02       4      19 ..      97     112 ..      95     117 .. 0.87
   2 !   14.5   0.0   1.8e-05     0.017      23      46 ..     182     205 ..     179     226 .. 0.88
   3 ?    1.9   0.0      0.13   1.2e+02     101     119 ..     241     259 ..     233     264 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.47
  Mg_chelatase   4 dvkGqeeakraleiaa 19 
                    v+Gqe+ak+ l +a+
    KKY15190.1  97 FVVGQERAKKILSVAV 112
                   699***********97 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.8e-05
  Mg_chelatase  23 HnlllvGppGsGKtmlakrlpsll 46 
                    n+ll+Gp+G GKt++ak l+ +l
    KKY15190.1 182 SNILLLGPSGVGKTLMAKTLARVL 205
                   59******************9998 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.13
  Mg_chelatase 101 eislahnGvLfLDElpefk 119
                   ++++a++G++ LDE+ ++ 
    KKY15190.1 241 DVAKAERGIICLDEIDKIA 259
                   799***********98765 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.2e-05      0.03       4      44 ..     163     203 ..     161     221 .. 0.78
   2 ?    3.4   0.0     0.057        54      89     107 ..     242     260 ..     236     288 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.2e-05
                      -SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat   4 esealkelleqikkvaktdlsvlitGesGtGKellaraihe 44 
                      ++e++++ l+  + ++  ++++l++G sG+GK+l+a+++ +
       KKY15190.1 163 HREQIQTPLHDPTPLTLDKSNILLLGPSGVGKTLMAKTLAR 203
                      5677777788888888899******************9876 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.057
                      HHHTTTSEEEEETGGGS-H CS
  Sigma54_activat  89 fekadgGtlfLDeigelpl 107
                      + ka+ G++ LDei ++ +
       KKY15190.1 242 VAKAERGIICLDEIDKIAT 260
                      679***********99865 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.8e-05     0.017       5      43 ..     181     210 ..     178     282 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.8e-05
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevv 43 
                 ++ +++ G+sG+GKT+ +++l++ l         ++++ 
  KKY15190.1 181 KSNILLLGPSGVGKTLMAKTLARVL---------DVPFS 210
                 67899****************9988.........44444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1     9e-06    0.0085      23      49 ..     180     206 ..     162     282 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 9e-06
      AAA_16  23 rpelvllsGesGvGKsslvrellrale 49 
                 + +++ll G+sGvGK+ ++++l+r l 
  KKY15190.1 180 DKSNILLLGPSGVGKTLMAKTLARVLD 206
                 3499******************98554 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.29   2.8e+02       4      33 ..      92     122 ..      87     124 .. 0.82
   2 !   13.1   0.0   6.5e-05     0.061      35      66 ..     183     214 ..     174     229 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.29
      RuvB_N   4 ksleey.igqekvkeklkifieaakkreeal 33 
                 ++l+++ +gqe+ k+ l++++    +r ++l
  KKY15190.1  92 QHLDQFvVGQERAKKILSVAVYNHYQRVQEL 122
                 56788846*************9999887765 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 6.5e-05
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkitsg 66 
                  +ll Gp G+Gkt +ak +a+ l+v + ++  
  KKY15190.1 183 NILLLGPSGVGKTLMAKTLARVLDVPFSMSDC 214
                 69**********************99987654 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.2e-05     0.011      57     136 ..     181     261 ..     172     289 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.2e-05
                 S-EEEEEESSTSTHHHHHHHHHHHSSSEEEEE.SSSSSSSHSSSEEEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCH CS
         MCM  57 dinvllvgdpgtaKsqlLkyveklapravyts.gkgssaagLtaavvrdeetgefvleaGalvladkGvcciDefdkmkee 136
                 + n+ll+g +g++K+ + k+++++++    +s  +  ++ag          ++ +      +  a++G++c+De+dk+ ++
  KKY15190.1 181 KSNILLLGPSGVGKTLMAKTLARVLDVPFSMSdCTPFTQAGYIGEDAEVCVHRLLSAANYDVAKAERGIICLDEIDKIATA 261
                 68*********************9988776662456799999998887777777778888899**************9874 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.6e-05     0.015      46      69 ..     180     203 ..     173     205 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.6e-05
   IstB_IS21  46 kkenivllGpsGvGKshlaialgv 69 
                 +k ni+llGpsGvGK+ +a +l++
  KKY15190.1 180 DKSNILLLGPSGVGKTLMAKTLAR 203
                 689****************99985 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.7e-05     0.026       3      30 ..     182     208 ..     180     262 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.7e-05
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfid 30 
                  +il+ Gpsg+GKT +ak+l  ++l + 
  KKY15190.1 182 SNILLLGPSGVGKTLMAKTL-ARVLDVP 208
                 689*****************.8887655 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00021       0.2       1      22 [.     184     205 ..     184     227 .. 0.85
   2 ?   -0.6   0.0       1.8   1.7e+03      25      65 ..     550     591 ..     537     598 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00021
  RNA_helicase   1 iwlyGpsgeGKStlakeLakal 22 
                   i+l Gpsg+GK+++ak+La+ l
    KKY15190.1 184 ILLLGPSGVGKTLMAKTLARVL 205
                   6899*************99876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.8
  RNA_helicase  25 klklkkkdsvys.rnpeddfwdgYtgqevvvidDfgqvkdee 65 
                   ++ + +++ vy+ r++ + f+ +  ++e+++ d f +  de 
    KKY15190.1 550 SVAKREEGAVYFsRGMGSRFHGMAAQEEANWEDRFRREMDER 591
                   334566788999788888888888888888777777777764 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.6e-05     0.072      32      58 ..     180     206 ..     175     221 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.6e-05
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkld 58 
                  k ++ll Gp+G+GKt+++k+l + ld
  KKY15190.1 180 DKSNILLLGPSGVGKTLMAKTLARVLD 206
                 5789*****************999887 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00051      0.48      19      46 ..     181     208 ..     164     232 .. 0.82
   2 ?    0.2   0.0      0.76   7.2e+02      25      51 ..     363     388 ..     353     389 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00051
                 TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgve 46 
                 ++ ilL G+ G+GKT +++ la+ l+v 
  KKY15190.1 181 KSNILLLGPSGVGKTLMAKTLARVLDVP 208
                 4569*******************99886 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.76
                 EESTTSSHHHHHHHHHHHTT------T CS
        TsaE  25 eGdLGaGKTtlvrglakalgveevkSP 51 
                 +G LG G T+ +++ ++    ++v+SP
  KKY15190.1 363 KGSLGFGQTVRSKSSLQFS-SSAVNSP 388
                 79********999998876.3489998 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00012      0.12       2      34 ..     184     216 ..     183     260 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftp 34 
                 +ll g  G++ktl++k+la++ld+ f+   +tp
  KKY15190.1 184 ILLLGPSGVGKTLMAKTLARVLDVPFSMSDCTP 216
                 7899999******************99888887 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.8      0.21     2e+02      83     126 ..     102     144 ..      92     155 .. 0.77
   2 ?    9.0   0.0    0.0016       1.5       2      24 ..     184     206 ..     184     267 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.21
      AAA_33  83 rerarflklarrlgvpvrivvvetdeetlkeRlakRaangddrs 126
                 ++ +++l++a  ++   r+  ++  e++ +eRla+R++++++++
  KKY15190.1 102 ERAKKILSVAV-YNHYQRVQELQRREDEEEERLARRERRERHPV 144
                 34456777776.6667799999999*************987764 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0016
      AAA_33   2 vllvGlpGsGKstlaerllkklg 24 
                 +ll G++G+GK+  a+ l++ l+
  KKY15190.1 184 ILLLGPSGVGKTLMAKTLARVLD 206
                 6789**************98775 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.4       1.6   1.5e+03     103     117 ..     129     143 ..      92     150 .. 0.73
   2 ?   11.8   0.0   0.00029      0.28       1      22 [.     184     205 ..     184     283 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.6
      AAA_18 103 peelleRlekRgyee 117
                 +ee+l R e+R++++
  KKY15190.1 129 EEERLARRERRERHP 143
                 456666666666555 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00029
      AAA_18   1 IlltGtpGvGKttlakeLskrl 22 
                 Ill G++GvGKt +ak L++ l
  KKY15190.1 184 ILLLGPSGVGKTLMAKTLARVL 205
                 99****************9876 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00025      0.24       5      79 ..     184     261 ..     180     289 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00025
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklke...ekktylflDEiqevpew 79 
                 +++ G+  vGKT ++k+l++ l v+ +      + +  +  ++ +  +++l+ +  ++    ++ +++lDEi ++ ++
  KKY15190.1 184 ILLLGPSGVGKTLMAKTLARVLDVPFSMSDCTPFTQAGYIGEDAEVCVHRLLSAANYDvakAERGIICLDEIDKIATA 261
                 7899***************88884444444444444444433322223333333322245578999******999654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.50
# Mc/sec: 3705.16
//
Query:       KKY15191.1  [L=670]
Description: hypothetical protein UCRPC4_g06418 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.1e-104  348.4   0.0    6.7e-95  318.5   0.0    2.0  2  Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127


Domain annotation for each model (and alignments):
>> Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   3.5e-12   6.2e-08       6     101 ..      15     114 ..      12     115 .. 0.85
   2 !  318.5   0.0   3.7e-99   6.7e-95     125     519 .]     114     545 ..     113     545 .. 0.92

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 3.5e-12
                      SSHHHHHHHHHHHCHHHCHHHHHHHHHHHHTT---SS-....--SGGG----TTT-TTHHHHHHHHHHHHHHHHH-..-HHHHHHHHHHHHHHH CS
  Glyco_hydro_127   6 dsffldrqetvreyllaldpdrlletfrkeaglpskae....aaggwedektgeelrdgdlgkwleavalllastk..dkelekrldrlvdela 93 
                      +sf+++r++ vr  +++ + d l+ t r  a+  + ++    + + w   +++  ++d+d+ kw+e+va+  + +   d + +  ++ lvd ++
       KKY15191.1  15 ESFWARRRNVVRSNTVPFQLDMLRRTGRYDAFDLKWQPcysdPPTIWP--VPNHLFWDSDVAKWIEGVAYFSEEESesDSRSKIAVEGLVDKIQ 106
                      59**************************99987666655555777888..9*******************998766115555556689****** PP

                      HHCHSSS- CS
  Glyco_hydro_127  94 kaQqedGY 101
                      kaQq+dGY
       KKY15191.1 107 KAQQPDGY 114
                      ******** PP

  == domain 2  score: 318.5 bits;  conditional E-value: 3.7e-99
                      HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCS-CCHHHHHTTTHHCTHHHHHHHHHHHHT-CHHHHHHHHCCHHCCHCC....... CS
  Glyco_hydro_127 125 YnlgkliegavayyqatgkeklldvatrladyleevleklgdeqlqkalvpehggieealvklyelTgdkrYldlAkrfidergldp....... 211
                      Yn+g+liega+a+ +   ++ ll  + ++   +    +++g+++ qk+++p+h +ie al++ly+ Tg +++l+lA++fi erg  p       
       KKY15191.1 114 YNAGHLIEGALAHSKRYASQDLLGPIEKYVYLI---NQTFGPNENQKHGYPGHPEIELALIRLYKRTGKQEHLNLARYFIVERGN-Pngvegkh 203
                      9*********************99998887666...************************************************5.55****** PP

                      ........................T-HCTTT-SSTCGCHHCHHCCHHHHHHHHHHHHHHHHHCTT...HCCHHHHHHHHHHHHHHCB-TTS-B- CS
  Glyco_hydro_127 212 ........................eklaykqdelpvrhqntaigkavRatylysgladvyeetgd...dkllkaaerlwdnvvtkkmyvtGGig 278
                                              + ++y+q++ p ++q+ + g+ vRa+yl + +ad++ ++ +   +++  +++rlwdn+v++kmy tGGig
       KKY15191.1 204 hyydveasergesehtlpsaypapRSYWYQQAHRPILQQDSIEGHSVRAMYLLTAVADLALLNPNgfrSSYEPTLRRLWDNMVQRKMYLTGGIG 297
                      *********************99999***********************************998744467888********************* PP

                      BCEEECE--STT--HCCCH-....-BHHHHHHHHHHHHHHHHCH--CHHHHHHHHHHHHTTGGGB-TTTS-BBSB--STTTBS--SSSC-BTTT CS
  Glyco_hydro_127 279 akhdgEaFgppyelpnrlay....aEtCasinmlklarrlleltpdakyadvlEralyNsilagvsldgksffYvnplesgskklrklystkwd 368
                      a +++E Fg +y lp+ + +    +EtCa+i+ ++la+rll+l+ d++yadv+Er+lyN +l+g+s+dgk+f+Yvn l+s + +  ++ +++w+
       KKY15191.1 298 AIKQWEGFGIDYFLPQGTDEggcySETCAAIGVMMLAERLLQLDLDGEYADVMERCLYNAMLTGMSIDGKAFTYVNQLASSPGN--PSKREEWF 389
                      ***************999989999******************************************************999999..455***** PP

                      TT-CHHHHHHHHCCGGGGGSEEEE....TT.EEEE-S-SSEEEEECGCT...-EEEEEEEE-TTSSSEEEEEEEETT--CEEEEEEE-TT-S-E CS
  Glyco_hydro_127 369 scaCCppnglrtvaklgeyiYaes....dd.tvyvnLyiaselklklkg...keveleqetnyPwegkvkltvktqkkaeftlklRiPgWaaaa 454
                      +caCCppn++r++ ++g+y+++ +    d  ++ v+Ly++ +l+  ++g   k+v+l q+tn Pweg+v+ +++++++ ++tl++RiPgWa+++
       KKY15191.1 390 ECACCPPNVARVLGHIGGYLWTPTttgaDSvDINVHLYASATLTYTIDGdkdKAVKLMQKTNWPWEGTVDCSLDASEAISTTLRFRIPGWASSY 483
                      **********************9966652269**********998776554689***************************************9 PP

                      EEEETTEEE--S-STTEEEEEEEE-.-TT-EEEEEE---EEEEE--TT-CCGTTEEEEEETTEEEE CS
  Glyco_hydro_127 455 tltvnGkkvvvkkksdgYleiereW.kkgdkvelelpmsvrleeanpkvrddankvavlrGPlvla 519
                       ++       +++ + +Yl++  +  ++  + +l++p+++rl++ +p +  ++ ++a++rGPl+++
       KKY15191.1 484 SVEPP--VPEPQSLQKSYLTLPPSYlRSHPTFRLTIPIKPRLIHPHPFT--NQATMALARGPLIYC 545
                      88743..337999********9988245567888888888888777765..7789**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.48
# Mc/sec: 4191.65
//
Query:       KKY15192.1  [L=263]
Description: hypothetical protein UCRPC4_g06419 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-24   86.6   5.2    1.1e-24   86.6   5.2    1.9  2  DUF3128      Protein of unknown function (DUF3128)
  ------ inclusion threshold ------
       0.15   11.8   0.9       0.27   11.0   0.9    1.3  1  DUF2286      Uncharacterized protein conserved in archaea (DU
       0.23   12.3   3.6       0.78   10.6   0.0    2.9  3  LZ_Tnp_IS66  Transposase C of IS166 homeodomain


Domain annotation for each model (and alignments):
>> DUF3128  Protein of unknown function (DUF3128)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.54   3.2e+03      56      73 ..      71      88 ..      49      91 .. 0.65
   2 !   86.6   5.2   1.8e-28   1.1e-24       2      79 .]     147     227 ..     146     227 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.54
     DUF3128 56 eilkkrerekkakkksse 73
                e+ ++re++ k  ++s e
  KKY15192.1 71 EAAREREAAAKRAQSSPE 88
                555666666655545544 PP

  == domain 2  score: 86.6 bits;  conditional E-value: 1.8e-28
     DUF3128   2 lscseafdellsCyslggqfkqyYryGeldnCsekwedfkfClklk....tkksekiqeilkkrerekkakkkssedvWelR 79 
                 +sc++afd +++C+s+ggqf ++YryGel++Cs+ w++f+ C+++k    + k+++i+++  ++ ++++   +ssedvWe+R
  KKY15192.1 147 VSCRTAFDYAFYCQSMGGQFTNVYRYGELRSCSHLWDEFWLCMRTKsysdERKRKMIKQHNIEKLKRWRSG-PSSEDVWEVR 227
                 8*********************************************8887777788888888888888777.9*******98 PP

>> DUF2286  Uncharacterized protein conserved in archaea (DUF2286)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.9   4.5e-05      0.27      19      78 ..     196     259 ..     189     262 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.5e-05
     DUF2286  19 egdleevvkevakealkeWn..peesDfivlrdklelelklplkpelydklkelsl..sregne 78 
                 + + ++++k+  +e lk W   p++ D   +rdkl+l  + p k + +   ke++   +r+gne
  KKY15192.1 196 DERKRKMIKQHNIEKLKRWRsgPSSEDVWEVRDKLDLDSPEPFKGDYVRLEKEMEEwkKRTGNE 259
                 5566799************7669999**********************9999999987888876 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.3      0.13   7.6e+02      29      45 ..      65      81 ..      49      98 .. 0.51
   2 ?   -1.2   0.0      0.63   3.8e+03      22      37 ..     120     144 ..     105     152 .. 0.60
   3 ?   10.6   0.0   0.00013      0.78       4      33 ..     206     235 ..     205     258 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.13
  LZ_Tnp_IS66 29 eLaleeleaeeaeveak 45
                   ++e+ +a e e++ak
   KKY15192.1 65 LAEFEAEAAREREAAAK 81
                 22333333333333333 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.63
  LZ_Tnp_IS66  22 ardpeQleL.........aleelea 37 
                  ++d  Ql L         ++e+l++
   KKY15192.1 120 DKDGSQLTLisdedptnvSFEALAE 144
                  6677888887554444444444444 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00013
  LZ_Tnp_IS66   4 eqlallkrklFGrsSEltardpeQleLale 33 
                  + +++lkr++ G+sSE   +  + l+L+ +
   KKY15192.1 206 HNIEKLKRWRSGPSSEDVWEVRDKLDLDSP 235
                  6799************66667777777433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1015  (0.0566122); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1794.93
//
Query:       KKY15193.1  [L=795]
Description: putative protein rna12 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.7e-173  575.5   1.4   2.1e-172  573.9   0.8    2.1  2  RNA12     RNA12 protein
    7.7e-05   22.7   0.0    0.00038   20.4   0.0    2.0  1  ATPase_2  ATPase domain predominantly from Archaea
    0.00047   19.9   0.0      0.021   14.7   0.0    2.7  2  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
    0.00094   19.2   0.0      0.004   17.2   0.0    2.0  2  DUF2487   Protein of unknown function (DUF2487)


Domain annotation for each model (and alignments):
>> RNA12  RNA12 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  573.9   0.8  4.7e-176  2.1e-172       1     444 []     331     752 ..     331     752 .. 0.96
   2 ?   -3.5   0.0       0.7   3.1e+03     418     444 .]     764     790 ..     762     790 .. 0.85

  Alignments for each domain:
  == domain 1  score: 573.9 bits;  conditional E-value: 4.7e-176
       RNA12   1 RkekiedlkewleEnvntFivvkGPrGSGkkeLvldrvlkdrkkvlvidCdelvkarndaelisaaAsqlGYfPvFswlnsissliDlavqgliGqkag 99 
                 Rk++ie+lk+w+ E+++tFivv+GPrGSGk+eLvl+++lkdrk++lvid + +++ar+d+++i+a+A+q+GY+P+Fsw+nsissliDla+qg+iG+k+g
  KKY15193.1 331 RKSDIEQLKTWMIETADTFIVVQGPRGSGKRELVLEQALKDRKNILVIDSKPIQEARGDTATIAATANQVGYRPIFSWMNSISSLIDLAAQGTIGTKTG 429
                 899************************************************************************************************ PP

       RNA12 100 lsetkeaqlknileiaaaalkdialeerkkedkaatlkeedyleahpeakPvvvidnflakaekngvvykklaeWaasLvqsniahVifltedvsaska 198
                 +set+eaq+ +il+++++alk+i le rkk+dk+a l +++yleahpe++Pvvvidnfl+k+++n+ +y++l eWaa L++ niah+iflt+dvs+sk+
  KKY15193.1 430 FSETLEAQIVKILGNTTMALKQIGLEGRKKDDKDADLGDDEYLEAHPEKRPVVVIDNFLHKSNENSAIYDRLGEWAAGLTTGNIAHIIFLTTDVSFSKS 528
                 *************************************************************************************************** PP

       RNA12 199 LskaLpnqvfktislgDaseesarkyVlsklkeeaekeekktassesaakdeeeseeqkkkdkaasakleekdlkeldealeklGGRltDLealvrrvk 297
                 L k+Lp++vf++islgDas+e+a+k+V+++l+ +ae ee                +++   ++       ++dl eld+++e+lGGRltDLe+l+rr+k
  KKY15193.1 529 LGKSLPDRVFRQISLGDASPEVAKKFVIKHLDADAEVEE---------------GKKKLAPSQ------VRDDLGELDSCIEALGGRLTDLEFLARRIK 606
                 *******************************87755542...............222222222......3569************************** PP

       RNA12 298 sgetpkeAveeiieqsaeeilkmflldseeakkakwtkeqaWklikklskkgsieynellleelfkgsaesalkaLekaelisvstedgrpskikagkP 396
                 +ge+p++Av++iieqsa+eilkm+ll + + ++++w++eqaW l+k+ls+++ i+ynelll++++k+++es+l+aLe+aeli++++++grp +ik+gkP
  KKY15193.1 607 TGESPQNAVQQIIEQSASEILKMYLL-EVDISSRNWSPEQAWLLVKQLSQSDRIRYNELLLSDIYKKNGESTLQALEQAELITIVSSNGRPYAIKPGKP 704
                 **************************.99********************************************************************** PP

       RNA12 397 vyraafkrlvsdkvlkavlelevleklikleekkikklEeElrllkkl 444
                 v++aaf++l+sd vlk++lel++l kl+ +e+k+++k+E Elr l++l
  KKY15193.1 705 VFQAAFRYLTSDAVLKSRLELALLAKLVGIENKNMEKYEMELRGLAEL 752
                 *******************************************99875 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.7
       RNA12 418 evleklikleekkikklEeElrllkkl 444
                 ++l    ++++ ki+ +E E+ +lkk+
  KKY15193.1 764 KYLLGKCSTSQGKIEGWEREMGELKKV 790
                 67777888999***********99985 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   8.5e-08   0.00038       3      44 ..     330     371 ..     328     536 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 8.5e-08
    ATPase_2   3 dRekelkeleeilerepneiyfiYGpegsGKtaLlkeiienl 44 
                 dR+  +++l++++ ++ ++++++ Gp+gsGK  L+ e + + 
  KKY15193.1 330 DRKSDIEQLKTWMIETADTFIVVQGPRGSGKRELVLEQALKD 371
                 9*******************************9988765443 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.037   1.7e+02       6      30 ..     111     135 ..     109     139 .. 0.85
   2 !   14.7   0.0   4.6e-06     0.021       9      63 ..     167     221 ..     165     225 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.037
                 ETTTSSHHHHHHHHHTTSCEEEEEE CS
       RRM_1   6 LppdvteeeLkelFskfGpiksikl 30 
                 L+++++++ +k +F++f++++ + +
  KKY15193.1 111 LTEYLDDQPVKPWFNPFEKVRAALV 135
                 89999***************76654 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 4.6e-06
                 TSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEE CS
       RRM_1   9 dvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkk 63 
                 ++t+e+L  lF+ +G+  +i+  +   +   ++  ++F+  + A  A+++++g  
  KKY15193.1 167 ELTQETLFSLFRRYGKLAEITPQPADSKILPKYTTIDFTRIRYAIMAKACMHGFI 221
                 68***************8887777799999**********************976 PP

>> DUF2487  Protein of unknown function (DUF2487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     9e-07     0.004      61     129 ..     490     557 ..     478     561 .. 0.77
   2 ?   -2.8   0.0       1.3   5.7e+03     113     137 ..     605     629 ..     597     631 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 9e-07
     DUF2487  61 keeekeeeverlkeweeelkeegfkhvvfitsdeewkelee.elegkliwvpaiplesldesqkqkivee 129
                 k++e+++  +rl ew++ l++ ++ h++f+t+d ++ +    +l ++++   +i+l + + ++++k+v +
  KKY15193.1 490 KSNENSAIYDRLGEWAAGLTTGNIAHIIFLTTDVSFSKSLGkSLPDRVF--RQISLGDASPEVAKKFVIK 557
                 4455555678************************997655437788765..7888888888888888765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.3
     DUF2487 113 iplesldesqkqkiveeqvkqvlel 137
                 i+  +  ++  q+i+e++++++l++
  KKY15193.1 605 IKTGESPQNAVQQIIEQSASEILKM 629
                 5566667788899999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.51
# Mc/sec: 4694.42
//
Query:       KKY15194.1  [L=564]
Description: putative cytochrome p450 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-25   90.4   0.0    5.9e-23   81.3   0.0    2.8  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0003       5.4       4     128 ..      70     188 ..      68     208 .. 0.72
   2 !   81.3   0.0   3.3e-27   5.9e-23     282     448 ..     346     542 ..     338     549 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0003
                 ESEHHCCHCHHHHTTTCCHHHHHHHHHHHH.-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHH CS
        p450   4 ptplplvgnllqlgrkeelhevlrklqkky.gpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrf 101
                 p+++p++g++++++     ++++ +l  k  + i+ + lg+ +++++ +p++++  + k++ +++ +  +  ++++   + g+   +++   w  ++r 
  KKY15194.1  70 PYWIPVIGSAFNFA--ADSYRYIGRLGDKTrDGIVAINLGGATHHFILSPSLARTFFTKRSLSMKEM-VYHAMENFF-GDPGTLRTVSDDVLWGPIHRS 164
                 789**********9..78999999998888799**************************97555554.666666544.445555555555666666666 PP

                 HHHHHTSHSTTTHHHHHHHHHHHHHHH CS
        p450 102 ltptltsfgklsleelveeeaedlvek 128
                 l   +++     + + +++++e+l ++
  KKY15194.1 165 LYGFMRDE---FIHKGIDRVTEELRKR 188
                 66666655...5555555555555555 PP

  == domain 2  score: 81.3 bits;  conditional E-value: 3.3e-27
                 HHHHHHHHHHSHHHHHHHHHHHHHHCCTTT.............T-HH.HHCCT-HHHHHHHHHHHHH..SCSSTTEEEEESSS.........CEEETT. CS
        p450 282 lswaLyeLaknPevqeklreEidevlgdkr.............epty.ddlqklpyldavikEtLRl..hpvvplllpRevtk.........dvvirg. 354
                 +++++y++++nPe+ ++++ Ei   +                 +++  + + + p+l+a+  E LRl  hp+++    +++ +         d  + g 
  KKY15194.1 346 IFFTIYHIITNPELYARIMTEISPYVYLTPgpndlpipdlpqlNIKGpELVRNTPLLKATMFECLRLdaHPFSY----KKAIEdttlteseaDAALLGk 440
                 7899*******************9884434467788888775533322467889************94444444....444441223344455555568 PP

                 .....EEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS...CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGE CS
        p450 355 .....ylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg...nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdppp 445
                      y+ipkG+ v ++++++++dp++++ P+eF+peRFl ++    ++k +  + + FG G  +C G+++A+ e+  f+a++L + ++e+ ++t+ +p
  KKY15194.1 441 pfpqtYFIPKGSFVAISHGSIQMDPKYWDSPHEFRPERFLVTDPatgETKAEMGQLMSFGGGSTMCKGRKFAEKEIITFVASILGYWDFEPVDKTKGWP 539
                 99999**********************************987766668889999**************************************9999998 PP

                 EES CS
        p450 446 ile 448
                 + e
  KKY15194.1 540 KVE 542
                 876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.54
# Mc/sec: 3146.21
//
Query:       KKY15195.1  [L=371]
Description: putative allantoin permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-60  204.4  19.2    3.1e-60  204.2  19.2    1.0  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami
  ------ inclusion threshold ------
       0.13   12.0   0.0       0.21   11.4   0.0    1.2  1  DUF4703         Domain of unknown function (DUF4703)


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.2  19.2   3.4e-64   3.1e-60     139     438 ..       2     307 ..       1     309 [. 0.95

  Alignments for each domain:
  == domain 1  score: 204.2 bits;  conditional E-value: 3.4e-64
  Transp_cyt_pur 139 vtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaeg.Gpvldkavklgkse...lflsavagvlagfatlilnapDFtryak 229
                     ++ f+fw ++l+i+l +++k+r ffv+++++v  ++ ++ i + +ka+g G++ d+ + ++ s    l+ls+  +v +g+at+++n++DFtry+k
      KKY15195.1   2 IAHFVFWTIQLPILLTPPHKLRWFFVFKVVIVLTVSTAVVIAMTKKAGGaGDIWDQEYTVSGSTrswLILSSFSSVCGGWATMATNVSDFTRYMK 96 
                     6789*****************************************************9999555699999************************9 PP

  Transp_cyt_pur 230 tkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakfdet...agvllililvalaqlgvnisanllsagldlaallPkkini 321
                     +k+  v  q   +p+ + l+ ++gi+ +++ak++yg+ +wsp+d+ ak+d     +g +++ +   + q+g+n san++s+ +d+ +l+Pk+ini
      KKY15195.1  97 SKN-GVGLQGFLLPGISLLIGMFGIIATSCAKVVYGEYIWSPMDLAAKWDGPwgrCGAFFVGFSWVVGQIGTNLSANVISCSNDMVNLFPKYINI 190
                     875.68999*******************************************9****************************************** PP

  Transp_cyt_pur 322 krgsliaavia.lvivpwkllssssklftaflsllavflspvagviiadyfvvrrgylklaalytrrrgsaYwyrkgvNwravaayivGiaaglv 415
                     +rg++i+ vi+  ++vpwk   s+s+  ++f+s l++fl p+a ++  dy++v+++++ +  ly+  r ++Y y +g+Nwra + +++++ ++l+
      KKY15195.1 191 RRGVIITTVISgWIMVPWKIVYSASS-LLTFMSGLSIFLAPIASILATDYWIVKKRNYDVPSLYR--RHGRYRYYNGINWRAAVTFLISVTPNLP 282
                     *********9746899**********.999***********************************..**************************** PP

  Transp_cyt_pur 416 gvagsvg..ikvvkgaeklfdlsyl 438
                     g+a +v   +k++ g++    ++yl
      KKY15195.1 283 GLARAVNssVKISSGIFHIWEMNYL 307
                     *999998888888888888888886 PP

>> DUF4703  Domain of unknown function (DUF4703)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.4e-05      0.21      95     160 ..     195     260 ..     180     269 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.4e-05
     DUF4703  95 mvsalqsGWqlCsWkssvsstsvssqlrtkspletpeaemlrevylvlWairkqlrqlarrqerrr 160
                 +++++ sGW +  Wk   s++s+ + +   s + +p a +l   y ++     ++  l rr  r r
  KKY15195.1 195 IITTVISGWIMVPWKIVYSASSLLTFMSGLSIFLAPIASILATDYWIVKKRNYDVPSLYRRHGRYR 260
                 567788************************************999555555555666677766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.51
# Mc/sec: 2203.20
//
Query:       KKY15196.1  [L=363]
Description: putative isopenicillin n [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.1e-25   88.0   0.8    3.1e-23   82.8   0.8    2.3  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    8.9e-23   80.7   0.0    1.6e-22   79.9   0.0    1.4  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.8   3.5e-27   3.1e-23       1     117 [.      28     170 ..      28     171 .. 0.86

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 3.5e-27
      DIOX_N   1 iPvidlsplsddedraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKekl..akspsfrGysrlgeektdg.kkldwkesfdlg 96 
                 iP+i l+    ++ +++++eqlr+Ac++vGffy++ h++p+e i  +fe+a+ FFa+  + K+++  +ks+  rGy++++e +td+ +k+d++e+f++g
  KKY15196.1  28 IPLISLK----SP-KEELLEQLRDACTRVGFFYIKDHDIPQEKITSVFETAKLFFAQDPHIKNEVnyKKSKILRGYEPPAEVRTDEtRKPDLNEAFNWG 121
                 8999999....44.68*************************************************97888899***********999************ PP

      DIOX_N  97 telp..........................eddp....agkplegpnqwPe 117
                 +e                            +  +    +++p+ gpn+wP+
  KKY15196.1 122 YEKSldpfwpssndgpgkdlssgiyvvhdaK--QhiewQDNPMSGPNVWPS 170
                 **66777777888887877777777776532..134666777888888886 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   1.8e-26   1.6e-22       6     100 ..     219     314 ..     214     315 .. 0.89

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 1.8e-26
                   EEEEE-S-..--------EEEEEESSSEEEEEEE-TT---EE.EETEEEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTGSEEEEEEEE CS
  2OG-FeII_Oxy   6 vlnyypph..pdpevilglgahtdaslltillqddvgglevf.kdgkwlrvppvdnslivniGdallflsngryksvlHrVlpvnegerRvsiayfi 99 
                   +l +ypp+   dp+  lg+gahtd +++til q dv  l+++  dg+w++ pp +++++vniGd+l  ++n ++ s+ HrV   ++g++R+si +f+
    KKY15196.1 219 RLIHYPPQpaSDPD-ALGIGAHTDIECFTILCQGDVPALQILnVDGQWVEAPPIKGTFVVNIGDMLARWTNDKFISTVHRVW-NTTGKERYSIPFFF 313
                   56788**9666777.9*************************845577**********************************9.555566*******8 PP

                   - CS
  2OG-FeII_Oxy 100 e 100
                    
    KKY15196.1 314 G 314
                   6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2447.29
//
Query:       KKY15197.1  [L=629]
Description: putative glutamyl-trna amidotransferase subunit a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-69  232.8   0.0    1.3e-68  232.0   0.0    1.3  1  Amidase          Amidase
    5.7e-27   95.0   0.0      1e-26   94.2   0.0    1.4  1  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.0   0.0   1.5e-72   1.3e-68       8     442 ..     181     606 ..     172     614 .. 0.82

  Alignments for each domain:
  == domain 1  score: 232.0 bits;  conditional E-value: 1.5e-72
                 HHHHHHHHHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE--SGGG- CS
     Amidase   8 krieavneklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgkTnmdefam 106
                 + +e++n+ ++ +   +  ea ++A +l + r++g++  pL+G+P++vKDn+dv+g+ptta++ a++++p e ++ +v+ L +aGa+++gkTnmd++a 
  KKY15197.1 181 EEYETINPHVW-IQLRTRAEAVQEAMNLSRLRQNGNPLLPLYGIPFAVKDNFDVAGMPTTAACPAYTYQPGE-NSFLVTALIAAGAILIGKTNMDQLAT 277
                 56788999999.999999*************************************************98877.9************************* PP

                 SSSSTT-TT---BBTTCTCC.B--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEEEESSHHHHHHHH CS
     Amidase 107 gsstensvfgptrNPwdksr.tpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGplarsvedlalll 204
                 g+s+  s +g+    +     + GGSS+Gs++av+aglv +++GtDt+GS R+PA+++g+vG+KPt+g +S +g+v+ + sld++ ++a+s  d++ + 
  KKY15197.1 278 GLSGCRSPYGTSASVYGGGAfITGGSSSGSGVAVGAGLVSFSLGTDTAGSGRVPAAYNGIVGMKPTKGTLSARGIVPACRSLDTASIFATSSADARKVW 376
                 ***************998877****************************************************************************** PP

                 HHHBS--TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGC..SS---CCHHHHHHHHHHHHHCTT...-EEEEEE-CCGGGHHH.HHHHHHHHHHH CS
     Amidase 205 rvilgedpkdstssvipeesedlaeelkkslkglriGvvkedg..vasldpevqravekalkaLeeaG...hevvevelpsleeals.lyylilvaeas 297
                 + +  +dp d   + + +    + + l+ +++g+  +v+       a+ dp++ ra+++a+ +Le+ G   h + + e   + +a + ly+  lv e  
  KKY15197.1 377 EILDVYDPLDAFAKLPSSLPLPQVNYLGPQKSGFGFAVPPLSAldAAECDPQYLRAFDRAISKLESIGgrlHLLTDSEYAPFRQANDlLYTGSLVNERV 475
                 ********998777644666778888888889999999876665699*********************8888899999*********888888888888 PP

                 HHTTT-SSSSS.---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCCBSEEEEESSSSS--BCCCCCHH CS
     Amidase 298 snlarylgvry.erlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafeelDvllsPtaptpaprlgekdkt 395
                 s+            +s+ ++l+ +     a+ +++ +k + +     ++++             r +++e+     ++Dvl++Pt+p  ++ + ++ + 
  KKY15197.1 476 SCIG------PdFIFSNLDKLHSTTRDLFASVISRPTKPWDIYTDLSIQQT-----------CTRKVQNEVFSPKAKIDVLVVPTTPFHPTIKAMEANP 557
                 7733......12223334443333333333444444444333333333322...........2224555655555678*********988877777666 PP

                 H......CSHHHHHGCCTTT...HHHHHTT--EEEEECCCCT.TECEEEEEEE CS
     Amidase 396 i......dsytvlynlldftavvvpvnlaglpalsvpagksedglPvGvqvig 442
                 i       + t   n+ld++av+v + ++ ++ +sv ++k    +P G+ +i 
  KKY15197.1 558 IglngkiGEFTHFANVLDLCAVSVNAEFMNQQQDSVSIEK----MPFGISFIC 606
                 6677766777777888888888888888888888877775....788888875 PP

>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.0   1.1e-30     1e-26      60     163 ..       4     107 ..       1     112 [. 0.96

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 1.1e-30
  Isochorismatase  60 lderkaaphfkpgttgaelvpelaplegdvvvdKtrfsafagtdldeiLkelgiktivlaGiatdvCVeatardaldlGyevvvvsDAvaalsp 153
                       d++++ + +++g+ g+++v++l+pl+g+vvvdK + ++f+ t+l+  L ++g+++++++G++t++CV +tar+a+d+G+e+ +++D+++++++
       KKY15197.1   4 GDKGPMGRLLIRGEYGHDIVDDLRPLPGEVVVDKPGKGSFWATGLHRKLVARGVTHLIFCGVTTECCVTTTAREAADRGFECCILTDCTGGFNA 97 
                      68899999************************************************************************************** PP

  Isochorismatase 154 elhdaalkrl 163
                         +++l+++
       KKY15197.1  98 SYATTSLDMI 107
                      9999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3954.08
//
Query:       KKY15198.1  [L=453]
Description: putative universal stress protein family domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-21   76.6   0.3    8.3e-21   75.0   0.0    2.0  2  Usp       Universal stress protein family


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1      0.44   7.8e+03      49      70 ..      27      48 ..      18      79 .. 0.49
   2 !   75.0   0.0   4.6e-25   8.3e-21       3     141 .]     133     271 ..     131     271 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.44
                CCHHHHHHHHHHHHHHHHHHHH CS
         Usp 49 dadeeaeeeeleleeaeleada 70
                d+++++ee+++++ ++ + a+a
  KKY15198.1 27 DEKPTTEEDAKKEGRKLSFAAA 48
                3333333333333333333332 PP

  == domain 2  score: 75.0 bits;  conditional E-value: 4.6e-25
                 SEEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHHH CS
         Usp   3 krIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevaee 101
                 ++ l+++D +++s+ Al+w l++++++g+e+++l+v+d ++     +  ++a++  +++++  ++ +  k  ++++ ++   ++ +g++ + i ++ + 
  KKY15198.1 133 RTFLCGTDQNDYSEFALDWLLDELADDGDEIVCLRVVDKDSRLVNEANLDKAKYRDAAQKLLDQVIA--KNTHDEKSISLIMELAVGKVQDIIQRMIQI 229
                 789*************************************999999999999999888888888877..59**************************** PP

                 TTSSEEEEESCC..SSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp 102 edadliVvGsrg..rsglsrlllGSvseyvlrhapcpVlvVr 141
                 +++  ++vG+rg  ++g ++ll GSvs+y+l+++p+pV+vVr
  KKY15198.1 230 YEPAVLIVGTRGrsLNGMQGLLPGSVSKYCLQQSPIPVIVVR 271
                 ************9999*************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 2980.68
//
Query:       KKY15199.1  [L=531]
Description: putative g protein-coupled receptor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-51  173.9   5.8    2.6e-51  173.9   5.8    2.0  2  ABA_GPCR  Abscisic acid G-protein coupled receptor
    6.6e-20   71.0   0.4    4.6e-19   68.3   0.1    2.4  2  GPHR_N    The Golgi pH Regulator (GPHR) Family N-terminal
  ------ inclusion threshold ------
      0.041   14.3   0.9       0.17   12.3   0.2    2.1  2  UPF0184   Uncharacterised protein family (UPF0184)


Domain annotation for each model (and alignments):
>> ABA_GPCR  Abscisic acid G-protein coupled receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2     0.084     5e+02      40      83 ..      87     134 ..      26     155 .. 0.74
   2 !  173.9   5.8   4.4e-55   2.6e-51       2     180 .]     330     510 ..     329     510 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.084
    ABA_GPCR  40 sssssDplavtlakll....lrhfdlkldlealsrqiSllLsgvllla 83 
                 ++s + +l+ +l++ll    +++fd ++ ++al  ++  lL++ +++ 
  KKY15199.1  87 TFSLTIALSAVLTELLlceiSNSFDATARKTALNLALPSLLLLLIFIL 134
                 445555666666666666666777777777777777766666666665 PP

  == domain 2  score: 173.9 bits;  conditional E-value: 4.4e-55
    ABA_GPCR   2 rsstllgkllkvlgvvfaiYCvyrilktllnllpriil...sssssDplavtlaklllrhfdlkldlealsrqiSllLsgvlllaslssvlttissllr 97 
                 rs+t lg+l++ +++vf++YCvyri++tl+n ++r +    +s+++Dp++ ++a+++ +h+++  +++ +++ iS+lLsgv+l++s+s+v++ti+ ++r
  KKY15199.1 330 RSQTALGRLWNTFQYVFSCYCVYRIVTTLVNFVRRRVNgntTSTATDPVTMFIALFA-KHINPAMNQTMWAHHISFLLSGVILMTSFSAVVQTINLFSR 427
                 689*****************************999766*99999*************.***************************************** PP

    ABA_GPCR  98 llpsslqllkssllnLllselmgiYvistllllrsnLPkevssklselLgekptvpnvidrwFDkvFllsciltavvilvaer 180
                 ++p+++ +++ ++ +L++++  g+Yvis++l+lr  +P++v+++++++Lg+  +   ++++wFD+ Fl ++ilta +++++++
  KKY15199.1 428 ITPRNFIHIARANASLVIAQTCGTYVISSALMLRGTMPSDVKNVINDALGSGALDAGWVQKWFDMFFLGAVILTAQGLWISRK 510
                 ******999**********************************************99**********************9975 PP

>> GPHR_N  The Golgi pH Regulator (GPHR) Family N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.1   7.7e-23   4.6e-19       2      67 ..     199     264 ..     198     265 .. 0.96
   2 ?   -0.7   0.0      0.25   1.5e+03      22      51 ..     406     438 ..     405     445 .. 0.68

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 7.7e-23
      GPHR_N   2 glieavlsrvsviGvtlmAiLSGfGavstpyetfslfkrpvteadinslearlehtrellaekrke 67 
                 +l+e  l+r++++GvtlmA+LSGf+avs+ ++ f  +++ v++ad++++ ++le+t ell++k+++
  KKY15199.1 199 TLVEGSLERLGLAGVTLMAALSGFAAVSAIWQSFGAKRSLVSDADVARKVSGLEATHELLESKKER 264
                 578999*********************************************************986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.25
      GPHR_N  22 LSG...fGavstpyetfslfkrpvteadinsle 51 
                 LSG     + s++ +t+ lf+r + ++ i+ ++
  KKY15199.1 406 LSGvilMTSFSAVVQTINLFSRITPRNFIHIAR 438
                 788666678888888888887776665555444 PP

>> UPF0184  Uncharacterised protein family (UPF0184)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   2.8e-05      0.17      57      80 ..     255     278 ..     242     280 .. 0.90
   2 ?   -0.3   0.0      0.25   1.5e+03      19      48 ..     293     324 ..     289     334 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.8e-05
     UPF0184  57 rELlesnRqiRlefaeqldeaPee 80 
                 +ELles ++ R+ ++ +l+eaPe+
  KKY15199.1 255 HELLESKKERRRALRLKLSEAPEQ 278
                 9*********************97 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.25
     UPF0184  19 eedefgeeEye..ainsmLDqinsaLDalEer 48 
                 + +e  + ++e   +  m+D ++  L al  r
  KKY15199.1 293 DSQELKSLDMEitGLETMVDSLEISLSALRSR 324
                 44444443333115677777777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3445.55
//
Query:       KKY15200.1  [L=255]
Description: hypothetical protein UCRPC4_g06427 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.50
# Mc/sec: 1528.93
//
Query:       KKY15201.1  [L=246]
Description: hypothetical protein UCRPC4_g06428 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.31   11.0   1.8       0.64   10.0   1.8    1.4  1  Nore1-SARAH  Novel Ras effector 1 C-terminal SARAH (Sav/Rassf


Domain annotation for each model (and alignments):
>> Nore1-SARAH  Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.8   3.5e-05      0.64       7      21 ..     142     156 ..     142     158 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 3.5e-05
  Nore1-SARAH   7 LqnFLriLeeEEeee 21 
                  L+ FL iLe+EE++ 
   KKY15201.1 142 LDEFLSILEKEEKQS 156
                  789*********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.31s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1632.26
//
Query:       KKY15244.1  [L=500]
Description: putative aspartic-type endopeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-73  246.1   6.5    5.4e-73  246.1   6.5    1.5  2  Asp             Eukaryotic aspartyl protease
    2.2e-12   47.6   7.1    2.2e-12   47.6   7.1    3.0  3  TAXi_N          Xylanase inhibitor N-terminal
    3.8e-06   26.8   0.0    1.2e-05   25.2   0.0    1.8  2  TAXi_C          Xylanase inhibitor C-terminal
    0.00016   22.2   0.6        2.4    8.8   0.0    3.8  2  Asp_protease_2  Aspartyl protease
  ------ inclusion threshold ------
        3.4    8.7  11.1       0.59   11.1   0.9    3.3  3  Lipocalin_4     Lipocalin-like domain


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.1   6.5   1.5e-76   5.4e-73       2     314 ..      72     407 ..      71     408 .. 0.87
   2 ?   -3.0   0.1         1   3.8e+03     150     189 ..     443     482 ..     438     493 .. 0.63

  Alignments for each domain:
  == domain 1  score: 246.1 bits;  conditional E-value: 1.5e-76
                 EEEEEEETTTTEEEEEEEETT--SEEEEBTT...EST.SHCHHTSS-B-GGG-TT-EEEEEEEEEECTTS.EEEEEEEEEEEEETTEEEEEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   2 YfgeisiGtpeqkftvifDTGSsdlWVpssk...ckk.ssackshstydpskSstykkngkslsisYGdg.svsGflsqdtvkvggltvknqefgeatk 95 
                 Yf++i++Gtp qk+++++DTGSsdlWV   +   c+  +s c+s+ tydps+Ssty+  +++++i+Y+dg s+sG +++dt  +gg t+ +++fg   +
  KKY15244.1  72 YFANITLGTPAQKLRMTLDTGSSDLWVNTPNstlCSAaNSPCSSSGTYDPSDSSTYSYVNSDFNITYADGsSASGDYVKDTLVFGGKTLSDFQFGTGYT 170
                 ***************************98885566665677******************************************************9988 PP

                 ESSHHHTTSSSSEEEE-S-GGGSCGG...SCCHHHH....HHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGEEEEEEEEEESS....TSSTEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxx RF
         Asp  96 epgstflaakfdGiLGlgfkeisvee...atpvfdn....lvsqglikepvfsvylnreeeeggeivfGgvDeskykGsltyvpvts....kgywqiel 183
                  ++       ++G+LG+g+  ++v     + +++dn    lv++g i+  ++s++ln  ++++g+i+fGgv+  ky+G+l+ +p+ +     + + i+l
  KKY15244.1 171 STS-------TQGVLGIGYGLNEVFVtslSDTPYDNlplaLVDAGFINVAAYSLWLNDLDSSTGSILFGGVNAGKYTGELQSLPILQesgvYAEFYITL 262
                 877.......8*******998887665567778*****************************************************9864434477888 PP

                 EEEEETTEEE.....EEEEE.EEEEEETTCSSEEEEHHHHHHHHHHHTTEEEETTCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSS..... CS
                 xxxxxxxxxx.....xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
         Asp 184 esvtvggktv.....lcssg.cqailDtGTsllalptsivekiakaigakksesegeyvvdCdslsslpdisftiggakitvpvselvlkeees..... 271
                 +++++++++      + ++   +++lD+G sl +lp+s v++i +a+ga++s+++ge +  C+  ss  +i+ft+ + +i+v+ +el++ +++s     
  KKY15244.1 263 TNISYKTSSDdsstsVDTDLpAAVLLDSGSSLSYLPDSLVSEIYDAVGAEYSSQSGEAFAPCSLASSGGSINFTFTDPSIEVSFDELLFDVTDSrgnal 361
                 8888776655433332222213445***************************************************************99876522222 PP

                 ....TTSEEEESEEECCTSSSEEEEHHHHTTEEEEEETTTTEEEEEE CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 272 ....eesqCilglvseeegdlwiLGdvFlrsayvvfdldnnrvglAe 314
                     +++ C++g+ s+++++l +LGd+Flrsayvv+dl+nn+++lA+
  KKY15244.1 362 tfndGTEACVFGI-SPSGSSLGVLGDTFLRSAYVVYDLENNEISLAQ 407
                 22224689*****.********************************8 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1
                 SEEEEEESSEEGGGEEEEEEEEEESSTSSTEEEEEEEEET CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 150 eggeivfGgvDeskykGsltyvpvtskgywqielesvtvg 189
                 ++g  v Gg+D+s  +  +t    +s+ + +++  +v+vg
  KKY15244.1 443 ATGAAVNGGSDSSGTSTGFTSEATSSSSTSAAHRLQVSVG 482
                 6777777888887777777766666654444444444444 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   7.1     6e-16   2.2e-12       1     177 [.      72     232 ..      72     233 .. 0.77
   2 ?   -1.5   0.0      0.74   2.6e+03      73      97 ..     364     385 ..     283     448 .. 0.57
   3 ?   -2.9   0.0       1.9   6.8e+03      92     121 ..     457     482 ..     438     493 .. 0.46

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 6e-16
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavpcssslCkaceasssaksgsssstceyeisygadgssssGvlatd 99 
                 Y+++i +Gtp+q+l +++DtGs+ +Wv+                +s+ ++ ++ pcsss         s +s+ s  + +++i+y+ dgss+sG++++d
  KKY15244.1  72 YFANITLGTPAQKLRMTLDTGSSDLWVNT--------------PNSTLCSAANSPCSSSGTY----DPSDSSTYSYVNSDFNITYA-DGSSASGDYVKD 151
                 9****************************..............5677888999999999988....56666777788899*****6.************ PP

      TAXi_N 100 tltlsstdgksvkvpnlvfGCgksnlgglaagadGilGLGrgk.lSlvsqlaskg...........slgnkFsyCL.ssssssssgvlffG 177
                 tl +     ++++++++ fG g+       ++++G+lG G+g    +v+ l+ +             + n+ +y L  ++ +ss+g ++fG
  KKY15244.1 152 TLVF-----GGKTLSDFQFGTGY-----TSTSTQGVLGIGYGLnEVFVTSLSDTPydnlplalvdaGFINVAAYSLwLNDLDSSTGSILFG 232
                 ****.....899***********.....234578******985334444444433333444444445566666666556666666666666 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.74
      TAXi_N  73 gsssstceyeisygadgssssGvla 97 
                 ++ +++c + is +  g ss Gvl+
  KKY15244.1 364 NDGTEACVFGISPS--G-SSLGVLG 385
                 33444444444443..2.3444444 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.9
      TAXi_N  92 ssGvlatdtltlsstdgksvkvpnlvfGCg 121
                 +s  +++++ + sst    +  ++l ++ g
  KKY15244.1 457 TSTGFTSEATSSSST----SAAHRLQVSVG 482
                 222222222222222....22224444444 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.69   2.5e+03      85     124 ..      66     108 ..      32     118 .. 0.56
   2 !   25.2   0.0   3.3e-09   1.2e-05       2     158 ..     258     404 ..     257     407 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.69
                 ....-S----EEEEESSS-.EEEE-GG..GGEEE-SSSEEEE- CS
      TAXi_C  85 stragpavPtitlvlegga.ewtisge..nllvkveggvvCla 124
                 +++ ++ + +itl   +++ ++t+++   +l+v+ +++++C a
  KKY15244.1  66 DNEETFYFANITLGTPAQKlRMTLDTGssDLWVNTPNSTLCSA 108
                 4445555555555555544444443321155666666666655 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 3.3e-09
                 EEEEEEEEEETTEEE-------EE-S----SEEE-SSSSSEEE-HHHHHHHHHHHHHTS-GG...GE---TT-S-EEETTS......-S----EEEEES CS
      TAXi_C   2 YyipvkgisvngkrlplpasaldldktgsggtvlstgtpytvletdvYralvkafakelaaekvkrvaavkpfelCynsselgstragpavPtitlvle 100
                 +yi++++is ++   + ++s+   d +  + ++l++g+++ +l+++  +++ +a+ +e +++      + ++f  C  +s+ gs + +++ P+i++ ++
  KKY15244.1 258 FYITLTNISYKTSSDDSSTSV---DTDLPAAVLLDSGSSLSYLPDSLVSEIYDAVGAEYSSQ------SGEAFAPCSLASSGGSINFTFTDPSIEVSFD 347
                 688888888776665555544...788999*************9999888888888888887......5678888998888888999************ PP

                 SS-.EEEE-GGGGEEE-SSSEEEE-EEE--S--SSSEEE-HHHHBTS-EEEETTTTEEE CS
      TAXi_C 101 gga.ewtisgenllvkveggvvClafvesgvagesavviGglqlednllvFDleksrlg 158
                 +   ++t s  n l +++g  +C+  ++   +g+s  v+G   l+  ++v+Dle+++++
  KKY15244.1 348 ELLfDVTDSRGNALTFNDGTEACVFGISP--SGSSLGVLGDTFLRSAYVVYDLENNEIS 404
                 9667*******************866666..7***********************9987 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.2     0.003        11       9      88 ..      84     180 ..      74     182 .. 0.55
   2 !    8.8   0.0   0.00068       2.4       7      31 ..     281     305 ..     275     327 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.003
  Asp_protease_2   9 pvrfllDTGasttlispelaekl...........glkvreseltvrvsg......aggevkarlvrldslklggltlknvpalvldlgeeidglL 86 
                     ++r+ lDTG+s + +++   + +             ++++s++   v++      a+g++ +  ++ d+l +gg tl ++++      ++++g+L
      KKY15244.1  84 KLRMTLDTGSSDLWVNTPNSTLCsaanspcsssgTYDPSDSSTYSYVNSdfnityADGSSASGDYVKDTLVFGGKTLSDFQFGTGYTSTSTQGVL 178
                     67788888888877776544333223344444332222222211111111222226666666666666677888888888877777777777777 PP

  Asp_protease_2  87 Gm 88 
                     G+
      KKY15244.1 179 GI 180
                     75 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00068
  Asp_protease_2   7 GkpvrfllDTGasttlispelaekl 31 
                     + p+ +llD+G+s ++++++l+ ++
      KKY15244.1 281 DLPAAVLLDSGSSLSYLPDSLVSEI 305
                     67999****************9886 PP

>> Lipocalin_4  Lipocalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.9   0.00016      0.59      48      80 ..     113     149 ..      58     161 .. 0.77
   2 ?   -2.0   0.1       2.1   7.5e+03      34      44 ..     261     271 ..     236     282 .. 0.55
   3 ?    3.0   0.8     0.057     2e+02      53      84 ..     391     422 ..     334     424 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
                  S----....-EEEEEEEETTTTEEEET-S--EEEEEE CS
  Lipocalin_4  48 cnesk....desgtytisgnkltitvtdgesketeii 80 
                  c++s+    ++s ty++ +++ +it++dg s++ + +
   KKY15244.1 113 CSSSGtydpSDSSTYSYVNSDFNITYADGSSASGDYV 149
                  3333355669******************998765544 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.1
                  ..S-EEE---- CS
  Lipocalin_4  34 tttfesyttyd 44 
                  t t+ sy+t +
   KKY15244.1 261 TLTNISYKTSS 271
                  23333333221 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.057
                  -EEEEEEEETTTTEEEET-S--EEEEEEEE-S CS
  Lipocalin_4  53 desgtytisgnkltitvtdgesketeiieltg 84 
                  + +  y +++n++++  td +s+e ei e+t+
   KKY15244.1 391 SAYVVYDLENNEISLAQTDFNSTENEIKEITS 422
                  77899************9999999****9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 3240.63
//
Query:       KKY15245.1  [L=635]
Description: hypothetical protein UCRPC4_g06401 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   11.8   0.1       0.75    9.6   0.0    2.2  2  DUF3613   Protein of unknown function (DUF3613)


Domain annotation for each model (and alignments):
>> DUF3613  Protein of unknown function (DUF3613)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   4.2e-05      0.75      41      66 ..     338     363 ..     331     364 .. 0.85
   2 ?   -2.0   0.0      0.18   3.2e+03      48      63 ..     472     488 ..     463     490 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 4.2e-05
     DUF3613  41 gaarerayqRYLesftheIPelydpd 66 
                    +++++qRY+  + h  Pe ++ d
  KKY15245.1 338 LSLMSNVHQRYIATYLHLYPEHFLRD 363
                 56799****************99865 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.18
     DUF3613  48 yqRYL.esftheIPely 63 
                 ++RYL  s+ +  P+++
  KKY15245.1 472 LRRYLlGSYLKRHPDFW 488
                 79996379998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 3811.29
//
Query:       KKY15246.1  [L=325]
Description: hypothetical protein UCRPC4_g06402 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-11   43.7   0.1    1.3e-10   41.6   0.1    1.8  1  APH             Phosphotransferase enzyme family
    0.00033   20.3   0.0     0.0012   18.4   0.0    1.8  2  Choline_kinase  Choline/ethanolamine kinase
  ------ inclusion threshold ------
      0.018   14.7   0.0       0.32   10.6   0.0    2.1  2  RIO1            RIO1 family
      0.042   13.2   0.0        5.8    6.2   0.0    2.2  2  Pkinase         Protein kinase domain
      0.063   13.5   0.0       0.13   12.5   0.0    1.4  1  zinc_ribbon_16  Zinc-ribbon like family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.1   3.7e-14   1.3e-10      33     209 ..      67     231 ..      53     267 .. 0.75

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 3.7e-14
                 -HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH..-STTTB-SHHCHTCCHHHHHH CS
         APH  33 aaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqvd.paalpladflaqdlellrqle 130
                 ++ e+ ++ + + lL  a v+vP+v+ +    +++++ ++l+e+++g+ l++      +++ +++l++ l ++  +       l++ + +  +++++ +
  KKY15246.1  67 TEIEADNQRRAFELLDPAIVRVPRVYSF---FTHQRTGYLLMEFIEGERLSQ-----LSDAHFDKLIAILTHFRGITgEIPGNLCGKGVVVGNPFPDDA 157
                 667888999*********78*******5...79999999*************.....999****************74446778888888888888877 PP

                 CHHHCCCGCCTCCHHHHHHHHHHHHHHHH--S.SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCH CS
         APH 131 satarllaselldlleeleeqvlaalaallpg.elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavll 209
                 ++   + a +l+   + + +++l+     l   + + v++H+Dl p+N+++   +g v +++D+ + g  pp ++l   l
  KKY15246.1 158 ER---SFATKLEL-EAYFGRRLLRNQSYQLNFaSTSLVFTHRDLAPRNIIWL-KHGSV-CLLDWMTGGFFPPEFELCNPL 231
                 77...33333333.3345554444444444447999****************.55665.9***************95444 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.37   1.3e+03      37      72 ..      89     126 ..      62     129 .. 0.67
   2 !   18.4   0.0   3.4e-07    0.0012     142     188 ..     187     232 ..     155     242 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.37
                     S-EEEEETTEEEE....E--TCEE--TTGGGCHHHHHHHH CS
  Choline_kinase  37 pklygifenGrie....efiesrtlstedlrepeiskkiA 72 
                     p++y +f+  r      efie+++ls+  l++ ++ k iA
      KKY15246.1  89 PRVYSFFTHQRTGyllmEFIEGERLSQ--LSDAHFDKLIA 126
                     677777766553333349999999974..55666665555 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 3.4e-07
                     GG-.EEEE-S--SGGGEEE.-CTTEEEE--GTT-EEEEHHHHHHHHHH CS
  Choline_kinase 142 esp.vvfcHnDlqegNillnkeekklvlIDFEYagynyrgfDlanhfi 188
                       + +vf H Dl ++Ni+   ++++++l D+   g+ +  f+l+n +i
      KKY15246.1 187 S-TsLVFTHRDLAPRNIIW-LKHGSVCLLDWMTGGFFPPEFELCNPLI 232
                     3.25***************.99********************999776 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   8.9e-05      0.32      52     102 ..      68     120 ..      63     132 .. 0.83
   2 ?    1.7   0.0     0.047   1.7e+02     127     149 ..     192     215 ..     173     217 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.9e-05
                 HHHHHHHHHHHHHHHHTT--S--EEEEETT....EEEEE--EETTEEGGBHHHCG CS
        RIO1  52 klwaekEfrnLkrleeagvpvPkpielkrh....vlvmefigedgvaapklkdve 102
                 ++ a +  r+ + l  a v+vP+++ +  h     l+mefi+  g ++ +l+d++
  KKY15246.1  68 EIEADNQRRAFELLDPAIVRVPRVYSFFTHqrtgYLLMEFIE--GERLSQLSDAH 120
                 6667777889999999*********9988744447*******..*******9987 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.047
                 EEESS-STTSEEEETT.EEEE--G CS
        RIO1 127 lvHaDLSeyNvlvded.kvviIDv 149
                   H DL   N+++ +   v ++D+
  KKY15246.1 192 FTHRDLAPRNIIWLKHgSVCLLDW 215
                 56**********998879999999 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0047        17      60      90 ..      88     118 ..      70     129 .. 0.85
   2 ?    6.2   0.0    0.0016       5.8     119     142 ..     192     215 ..     179     225 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0047
                 B--EEEEEEESSEEEEEEE--TTEBHHHHHH CS
     Pkinase  60 ivrlyevfeekdelylvleyveggeladlle 90 
                 + r+y++f+++++ yl++e++eg+ l +l  
  KKY15246.1  88 VPRVYSFFTHQRTGYLLMEFIEGERLSQLSD 118
                 447899******************9988765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0016
                 EE-SS-SGGGEEEETTTEEEE-SG CS
     Pkinase 119 iiHrDlKpeNiLidekgelKitDF 142
                 + HrDl p Ni+  ++g + + D+
  KKY15246.1 192 FTHRDLAPRNIIWLKHGSVCLLDW 215
                 78************9**9999997 PP

>> zinc_ribbon_16  Zinc-ribbon like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.7e-05      0.13      13      72 ..      17      78 ..       9      94 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.7e-05
  zinc_ribbon_16 13 akektnil..qaavssaGgakfldksksslcprcskplpkcavcglslGtsdvtnkdskrks 72
                    +  ++ i   + av+s G     + s+ss+   c++p+   +v  +  G  ++  ++++r  
      KKY15246.1 17 SSAESSIDqtNVAVKSGGMEMIENFSQSSIIELCARPVAAHCVVKYGPGVTEIEADNQRRAF 78
                    444444441155566666666668899***************************99998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.54
# Mc/sec: 1816.89
//
Query:       KKY15247.1  [L=424]
Description: putative cop9 signalosome subunit 6 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-08   33.9   0.1    1.4e-07   31.9   0.1    1.9  1  MitMem_reg  Maintenance of mitochondrial structure and functi


Domain annotation for each model (and alignments):
>> MitMem_reg  Maintenance of mitochondrial structure and function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.1     8e-12   1.4e-07      19     110 ..     249     371 ..     190     372 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 8e-12
  MitMem_reg  19 s...stlstglnrqyyslkilqerldlikdYlkkve.............egelpvnheilrnlqkllnllPhlet...............eelekefnv 86 
                 s    +l+++l++ ++s+++lq+rl+l++++++++              +   p++ + lr++++l+++l  l+                 + e +++ 
  KKY15247.1 249 SsedDDLIANLTTRLNSVRMLQSRLSLLQKFINSLPpsylssasehltpTSPSPSSLSYLRQISALVTRLSLLTPvptitpsdddnsippTQAEADLTA 347
                 033579******************************7777776544433333677788************98888777777887777777779999*** PP

  MitMem_reg  87 etnDvllvvyLasltrsilalnel 110
                 + nD  l+ +L+ l r i+ +nel
  KKY15247.1 348 QSNDANLTALLSLLGRNIQGANEL 371
                 *******************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 2685.64
//
Query:       KKY15248.1  [L=569]
Description: hypothetical protein UCRPC4_g06404 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-25   88.2   0.4    1.6e-24   87.2   0.4    1.5  1  DUF563    Protein of unknown function (DUF563)


Domain annotation for each model (and alignments):
>> DUF563  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.4   8.8e-29   1.6e-24      66     203 ..     328     483 ..     249     487 .. 0.74

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 8.8e-29
      DUF563  66 e............klivpvpprssggfqgallpklrdrlrerlnlekr......kkptrvlyisRlkagsRrilNeeevl....kllpkrgfevvdpes 142
                 +              ++++p++  +++++++++++r r++++l+l++r      + p   ++i+R   ++R i   + +l    + +p+ +++vvd+++
  KKY15248.1 328 NivlplagsssnfWPLIISPGYQPPCHNPFFFRAVRSRMFSHLKLTPRsatstrQHP-TMTFIDR--RKKRIIYDSDHLLtklrNMYPHSTLNVVDFSQ 423
                 24444444444445567888889**************************99986666.999****..89**********999999999999******** PP

      DUF563 143 lsfeeqiklfssakvivgphGsgltnliFmppgttvielvppnrldnsfenlaallglkya 203
                 l+++ q++l  ++++++g hGs+l +l++m+p+t+ +e+  p  +  +++++aa+  ++y+
  KKY15248.1 424 LTLKAQVELILDTDILIGTHGSALLHLLWMHPDTAYVEI-KPVSFPFHWRTFAAFNSINYF 483
                 ***************************************.999999999******999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 3605.09
//
Query:       KKY15249.1  [L=3177]
Description: putative vacuolar protein sorting-associated protein vps13 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-97  326.1   0.0    6.2e-96  320.9   0.0    2.9  2  SHR-BD         SHR-binding domain of vacuolar-sorting associa
    2.2e-91  305.5  17.6    2.9e-90  301.8   3.3    5.5  7  VPS13_mid_rpt  Repeating coiled region of VPS13
    1.8e-81  273.4   0.2    2.2e-79  266.6   0.0    3.4  3  VPS13          Vacuolar sorting-associated protein 13, N-term
    3.1e-75  251.8   4.3    8.6e-70  234.1   0.5    2.8  2  VPS13_C        Vacuolar-sorting-associated 13 protein C-termi
    1.1e-40  138.3   0.0    4.1e-40  136.5   0.0    2.1  1  Chorein_N      N-terminal region of Chorein or VPS13
    5.7e-08   33.0   0.2    4.7e-07   30.1   0.0    2.5  2  ATG_C          Autophagy-related protein C terminal domain
  ------ inclusion threshold ------
       0.45   10.4   8.7        2.1    8.3   0.9    3.2  2  DUF896         Bacterial protein of unknown function (DUF896)


Domain annotation for each model (and alignments):
>> SHR-BD  SHR-binding domain of vacuolar-sorting associated protein 13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.05   1.3e+02       7      35 ..    1904    1932 ..    1898    2081 .. 0.63
   2 !  320.9   0.0   2.4e-99   6.2e-96       1     270 [.    2241    2522 ..    2241    2523 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.05
      SHR-BD    7 apywllNkTglpLevrqednsneaagqle 35  
                  apy + N Tg +L+v  +dn+n+   +++
  KKY15249.1 1904 APYRIRNYTGFDLNVWADDNKNDDGAAAK 1932
                  46666666666666666655554333333 PP

  == domain 2  score: 320.9 bits;  conditional E-value: 2.4e-99
      SHR-BD    1 lkisIyapywllNkTglpLevrqednsneaagqleee.......eearsltpllfSfddrdtknraqlrignskwskpfsldaigetnevelrsaek 90  
                  +k+s+y+py++lNkTgl++++++++++  +++++ +        ++ r++ p+++S+ ++d+knr  l++g+s wskp+sldaig+t e +++s+++
  KKY15249.1 2241 FKVSVYSPYVVLNKTGLDINIQSKASWGASRSTAGQGfvksaggSGPRKALPYMYSYPTDDRKNRSVLKVGESGWSKPQSLDAIGSTYEFVVPSTNG 2337
                  589********************************88****998899************************************************** PP

      SHR-BD   91 esevyiGisveegrgkykltkiVtiaPRyilkNklsekleiaqrgskkvielkpgeliplhwlrnkeekelvirlpesnsqwSggfnisdvgslyvk 187 
                  ++e++ G+sv+eg+gky ltk+Vti+PR+ilkN+lse+++i+++gs +v+++k+g+l pl++ r++ +k+l++++p++n+qwS+ f+is+vg ++vk
  KKY15249.1 2338 KQEMHAGVSVAEGEGKYTLTKVVTITPRFILKNRLSEEIQIREPGSPDVMNMKSGDLLPLYFIRQSPQKQLCLCFPGVNNQWSSSFDISNVGMTHVK 2434
                  ************************************************************************************************* PP

      SHR-BD  188 lrrqnseqvllkveiiledatifikiedaeknewPfsirNeseveilfyqrdpelnsd......eskplkytlppksvmpYawDePtak 270 
                  l + +++q+ll+ve+ile+at+f++i+ ++kn wPfs+rNes+ e+lf+q +p++++d       +kp++y+lpp+s+mpYawD+P+ak
  KKY15249.1 2435 LAKHGQRQRLLRVEVILENATLFLHISLETKN-WPFSMRNESDLEFLFFQSNPNVDEDeedrgsGWKPIRYKLPPRSIMPYAWDYPSAK 2522
                  ********************************.*******************************9**********************97 PP

>> VPS13_mid_rpt  Repeating coiled region of VPS13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.3      0.75   1.9e+03     119     165 ..     120     166 ..     112     174 .. 0.74
   2 ?   -3.3   0.0         2     5e+03     169     231 ..     248     309 ..     242     311 .. 0.76
   3 !  301.8   3.3   1.1e-93   2.9e-90       1     235 []     596     832 ..     596     832 .. 0.99
   4 ?   -2.1   0.0      0.84   2.1e+03      12      37 ..    1007    1032 ..    1003    1064 .. 0.78
   5 ?   -0.0   0.0      0.19   4.8e+02      53     111 ..    1196    1255 ..    1170    1262 .. 0.72
   6 !    8.9   0.0   0.00036      0.93     177     235 .]    1297    1354 ..    1276    1354 .. 0.82
   7 ?   -1.2   0.2      0.44   1.1e+03     174     219 ..    1648    1692 ..    1587    1700 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.75
  VPS13_mid_rpt 119 dksaikeikskskqqyseedleeleelmYDkfslklsdtqvllgdsg 165
                     k++  e  s+++qq +++ +++l   + D+++++++++ v + ds+
     KKY15249.1 120 LKEKNTEGMSQEEQQRNQSFTQSLVTAIVDNLQVSVKNVHVRYEDSI 166
                    444555556666666778889999999**********9999887766 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2
  VPS13_mid_rpt 169 kealsedssklhilepinlkltleksivpkalnlpkfkvsgelpslevnlsdkkykslmelid 231
                    +ea++  ++++++l+p++    +e  +  k l+ pk+k    +++l + + +++y++++ l+d
     KKY15249.1 248 REAITAGENSQYMLKPVSGRAGIEMDKTGK-LDRPKIKARLLFDELGFVVDEDQYRDALMLVD 309
                    455554455667777777777777777766.788999999999**************999986 PP

  == domain 3  score: 301.8 bits;  conditional E-value: 1.1e-93
  VPS13_mid_rpt   1 fetnPldekadqrlsiklrpleiiYdaetveevvkffkppksvlesvealssaasstleelkeqtragleyaleehktldlkidlqapliiiPesi 96 
                    fe+nPlde+ad+++ +kl+++e i ++ ++ e+vkffkpp++++es++al ++a++t+ee+++qtragl +aleehkt+++++dlqaplii+Pesi
     KKY15249.1 596 FENNPLDESADTAVMMKLKSVEFIHNPTFIVEIVKFFKPPERQMESIGALLETAGATVEEIRQQTRAGLHFALEEHKTVNANLDLQAPLIIVPESI 691
                    9*********************************************************************************************** PP

  VPS13_mid_rpt  97 teeessllvlDlGhlsveselvdksaikeikskskqqyseedleeleelmYDkfslklsdtqvllgdsgedwkeals..edssklhilepinlklt 190
                    t+e+s +l+lD+Gh+s++selvdk+++++i+sk+k++++eed+++le+lmYDkf lkl++tqvl+g+ +e++k  l+  +ds+++hi+++in++++
     KKY15249.1 692 TKESSLCLILDAGHISLNSELVDKKTMNDIQSKQKKKFTEEDYRQLESLMYDKFLLKLDSTQVLIGPGIEATKGELEstTDSKNYHIIDRINMDFV 787
                    *****************************************************************************7544899************ PP

  VPS13_mid_rpt 191 leksivpkalnlpkfkvsgelpslevnlsdkkykslmelidtsiP 235
                    le+si+pka +++k++vsg+lp+l++++sd+kyk+lm+lid++iP
     KKY15249.1 788 LETSIIPKASDITKTRVSGRLPLLHASISDRKYKNLMKLIDVAIP 832
                    ********************************************9 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 0.84
  VPS13_mid_rpt   12 qrlsiklrpleiiYdaetveevvkff 37  
                     ++l++++++++i++ ++t+ ++++f+
     KKY15249.1 1007 TNLDVSVSTINIVVTRRTLLTLLDFV 1032
                     67889999999999999999999985 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.19
  VPS13_mid_rpt   53 aasstleelkeqtragleyaleehktldlkidlqapliiiPe.siteeessllvlDlGhl 111 
                     + ++ ++  ++ ++ +   + e+ +++ ++i ++ p+++ P   + ++  +l+   lG++
     KKY15249.1 1196 KMQAIFNAARQAAANQATQIQENASKMHFDIVVNTPILVFPRaMVGDRPRDLITAHLGEI 1255
                     556667778888888888889999999999999999999999644455666666666666 PP

  == domain 6  score: 8.9 bits;  conditional E-value: 0.00036
  VPS13_mid_rpt  177 sklhilepinlkltleksivpkalnlpkfkvsgelpslevnlsdkkykslmelidtsiP 235 
                     + l ++e+++l+++++    +  l+ p ++++g++  +++++s +++k lmel  + iP
     KKY15249.1 1297 EVLEMIENVDLEFKIRYLEHQPGLERPDTEIDGTMSPVQLRVSQAQMKFLMELS-KTIP 1354
                     4577888888888888888777788899*************************9.6677 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 0.44
  VPS13_mid_rpt  174 edssklhilepinlkltleksivpkalnlpkfkvsgelpslevnls 219 
                     e +s+l+il+ +++++++++    k  +l+++ +++e   l+++l 
     KKY15249.1 1648 E-NSRLRILDDFTVQMSMDNRNQGKGSSLTSIHIDIEPLVLRLSLR 1692
                     2.36699999999999999999999999999999887666666655 PP

>> VPS13  Vacuolar sorting-associated protein 13, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.6   0.0   8.8e-83   2.2e-79       1     236 []     139     376 ..     139     376 .. 0.95
   2 ?    1.7   0.1     0.072   1.8e+02     114     170 ..     753     829 ..     692     856 .. 0.66
   3 ?    0.0   0.0      0.23     6e+02     120     171 ..    1301    1353 ..    1258    1365 .. 0.79

  Alignments for each domain:
  == domain 1  score: 266.6 bits;  conditional E-value: 8.8e-83
       VPS13   1 FlesLiakIldNlqvtiknvHiryeDslsvpgrpfalGitLesLsaqstdenwkptfikgeeseekivyKlvelesLavYwdsds............se 87 
                 F++sL++ I+dNlqv++knvH+ryeDs+ ++g+pfa+G+t++++sa+std++wkptfi++   +++ ++Kl+ l+s+avYw++d+            + 
  KKY15249.1 139 FTQSLVTAIVDNLQVSVKNVHVRYEDSIATSGHPFAAGLTIKEMSAVSTDSDWKPTFIQS---TSGNTHKLAVLDSFAVYWNTDTelfgsgrgdevgA- 233
                 99*************************99999****************************...9*********************8888777654321. PP

       VPS13  88 dksledlsleeleeafessikeksekakrhqYiLkPvsgeaklklnkkgetdapklkldleldevgltLseeqyrdilklleslsrlerreeyrklrPk 186
                   + + +++e+l ++++++i+  +    + qY+LkPvsg+a ++++k+g+ d+pk+k++l +de+g++++e+qyrd+l+l++ ++++ r++ey+k +Pk
  KKY15249.1 234 --DEQGFDHEDLMNQLREAITAGE----NSQYMLKPVSGRAGIEMDKTGKLDRPKIKARLLFDELGFVVDEDQYRDALMLVDLFHYFIRHQEYKKEQPK 326
                 ..3357999***********8766....69********************************************************************* PP

       VPS13 187 vsvkenpraWWkYaikavleeirekrrkwsweaiaerrdlrkrYvelykk 236
                 +s+ke+praW+k+a +avl++i++k+r+w+w++++errd+r rY+el+kk
  KKY15249.1 327 KSPKEDPRAWLKFAGQAVLDKIHDKNRRWTWDYFRERRDDRLRYIELFKK 376
                 ************************************************96 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.072
       VPS13 114 a...................krhqYiLkPvsgeaklkln.kkgetdapklkldleldevgltLseeqyrdilklles 170
                 +                   ++   i+  +++++ l+ +  ++ +d+ k +++ +l  ++ ++s+++y++++kl++ 
  KKY15249.1 753 QvligpgieatkgelesttdSKNYHIIDRINMDFVLETSiIPKASDITKTRVSGRLPLLHASISDRKYKNLMKLIDV 829
                 044444444444455555545555699999999999888744444469**************************986 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.23
       VPS13  120 iLkPvsgeaklkln.kkgetdapklkldleldevgltLseeqyrdilkllesl 171 
                  +++ v+ e+k+++  ++   ++p  ++d  ++ v+l +s++q++ +++l +++
  KKY15249.1 1301 MIENVDLEFKIRYLeHQPGLERPDTEIDGTMSPVQLRVSQAQMKFLMELSKTI 1353
                  6788899999987734444458**********************999998876 PP

>> VPS13_C  Vacuolar-sorting-associated 13 protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.1   0.5   3.3e-73   8.6e-70       1     177 [.    2773    2948 ..    2773    2949 .. 0.97
   2 !   18.2   0.3   6.3e-07    0.0016     108     169 ..    2975    3037 ..    2971    3041 .. 0.91

  Alignments for each domain:
  == domain 1  score: 234.1 bits;  conditional E-value: 3.3e-73
     VPS13_C    1 kiYfeklhlqPiklhlsfslsekknkeeslekeqsllslllllnslgvtltniddapikLnalelenvflslesliekikkhYsqqllkqlykilgs 97  
                  ++Yfe lhlqP++l+lsf ++e+ n+e++  + +++++++  +n+++++++n++dap++Ln+l+len+++s++ l+  ++ hY+q++l+q++ +lgs
  KKY15249.1 2773 DVYFELLHLQPMQLDLSFVRTERINAEDQM-SVSNPIMFF--VNVMTMSIGNVNDAPVRLNSLMLENARVSIPALMAAVQAHYTQEFLRQIHIVLGS 2866
                  58************************9855.469999999..******************************************************* PP

     VPS13_C   98 ldvlGNPvglfnnissGvkdlfyePiqglvkg..peefgeglakGaksLvkktvfGvadsvskitgsvskglaaltmDeeYq 177 
                  +d+lGNPvglfnn+ssG++d+fyeP+qglv++  p+e+g+g+akGa+s+vkk+vfG++dsv+k+tgs+skglaa++mD+e+q
  KKY15249.1 2867 ADFLGNPVGLFNNVSSGFADIFYEPYQGLVMTdrPQELGIGIAKGASSFVKKSVFGLSDSVAKFTGSMSKGLAAASMDKEFQ 2948
                  *******************************889***********************************************9 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 6.3e-07
     VPS13_C  108 fnnissGvkdlfyePiqglvkg.peefgeglakGaksLvkktvfGvadsvskitgsvskglaa 169 
                   ++++sG+  l   P+qg+ k+  + f++g+ kG+  L++k   G++d +s++++ v ++ ++
  KKY15249.1 2975 ASSLASGIGGLARHPLQGAEKEgLQGFVKGVGKGVLGLATKPAIGAFDLASNVAEGVRNTTTV 3037
                  67899****************889******************************999887766 PP

>> Chorein_N  N-terminal region of Chorein or VPS13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.5   0.0   1.6e-43   4.1e-40       1     115 [.       2     115 ..       2     116 .. 0.98

  Alignments for each domain:
  == domain 1  score: 136.5 bits;  conditional E-value: 1.6e-43
   Chorein_N   1 leslvskllnryLgeyvenldrdqlkvslwsGeveLenlkLkkealdklelPfevkegvigklrlkipwsnlkskpvvieiedvyllaeprseseeede 99 
                 le+lv++llnr+Lg yv+n+d++ql+v++wsG+v+L+nl+L++eald+l+lP++v+eg++g+l+l+ipwsnl+ kpv+++iedv+lla pr e  ++d 
  KKY15249.1   2 LEGLVANLLNRFLGMYVKNFDPKQLNVGIWSGDVKLRNLELRREALDQLHLPLNVVEGHLGQLTLSIPWSNLRGKPVKVNIEDVFLLAAPRVEA-DYDP 99 
                 79****************************************************************************************9988.99** PP

   Chorein_N 100 ekeekreqaakkkkLa 115
                 e+e +r++a k +kL+
  KKY15249.1 100 EEEARRANAVKIEKLE 115
                 *9***********997 PP

>> ATG_C  Autophagy-related protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1         1   2.6e+03      39      72 ..    1581    1615 ..    1570    1629 .. 0.75
   2 !   30.1   0.0   1.8e-10   4.7e-07       2      83 ..    2954    3035 ..    2953    3042 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1
       ATG_C   39 evaes.kgakgavkavvravPvavlrPligateav 72  
                  +++e  k + ++  ++v a  ++v +P+i  tea+
  KKY15249.1 1581 KEHEGpKMSMSFRVNIVDAQVILVANPTITNTEAI 1615
                  33332255556667999****************97 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 1.8e-10
       ATG_C    2 slyasqPedlreGlqqAysslskglksaaqtilavpsevaeskgakgavkavvravPvavlrPligateavsktlqGvrnql 83  
                  s+  ++P+    G++++ + + + l s    + + p + ae++g +g+vk+v + v  +  +P+iga + +s++  Gvrn+ 
  KKY15249.1 2954 SKSRNRPKHALYGVTSGGNAFASSLASGIGGLARHPLQGAEKEGLQGFVKGVGKGVLGLATKPAIGAFDLASNVAEGVRNTT 3035
                  678899**************************************************************************96 PP

>> DUF896  Bacterial protein of unknown function (DUF896)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.9   0.00083       2.1       8      53 ..     118     163 ..     111     166 .. 0.93
   2 ?    4.6   1.5     0.011        29       7      29 ..     372     394 ..     366     416 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00083
      DUF896   8 eLakkkktegLTeeEkeeqkkLRkeYlkafraslksqlenvkvvDe 53 
                 eL k k teg+++eE++  +   +  ++a+  +l+  ++nv v  e
  KKY15249.1 118 ELLKEKNTEGMSQEEQQRNQSFTQSLVTAIVDNLQVSVKNVHVRYE 163
                 89999************************************99665 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.011
      DUF896   7 NeLakkkktegLTeeEkeeqkkL 29 
                   + kkk+++ LT+eE e  kkL
  KKY15249.1 372 ELFKKKKREQALTKEEDENYKKL 394
                 445678888********999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       960  (0.0535445); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.36u 0.34s 00:00:01.70 Elapsed: 00:00:00.52
# Mc/sec: 18404.07
//
Query:       KKY15250.1  [L=359]
Description: hypothetical protein UCRPC4_g06406 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-42  142.9  11.7    1.2e-41  142.4  11.7    1.2  1  DUF3429   Protein of unknown function (DUF3429)
  ------ inclusion threshold ------
      0.073   13.3   2.2       0.13   12.4   2.2    1.4  1  ANAPC9    Anaphase-promoting complex subunit 9


Domain annotation for each model (and alignments):
>> DUF3429  Protein of unknown function (DUF3429)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.4  11.7   1.3e-45   1.2e-41       1     143 [.     135     292 ..     135     293 .. 0.95

  Alignments for each domain:
  == domain 1  score: 142.4 bits;  conditional E-value: 1.3e-45
     DUF3429   1 vpklalvlGlaGliPfvalallt................laislllaeellstlaaaqlaYgavilSFlGGvhWgla.leeegaakakrtrlalsvvps 82 
                 vpk+a+ +GlaG++P+va++l+t                + ++ ++ae+ll++++++q++Yga+i+SFlG++hWgl+ +  +g+ k  + r+a++vv++
  KKY15250.1 135 VPKEAFNMGLAGVLPYVATSLSTvylaydinhaaehgfgFIFDPKTAEALLHIIEPIQIGYGATIISFLGAIHWGLEwAGFGGK-K-GYPRYAIGVVAT 231
                 79*************************************9999**********************************6666665.3.489********* PP

     DUF3429  83 llawlalllpseaalallilgflllllvDrraaragwlpswylklRfvltavvvlsllltl 143
                 ++aw++lll++e++l+  +l f+ll++vD+raa+ gw+pswy+++Rfvlt++v+++++l+l
  KKY15250.1 232 AAAWPTLLLSAEMGLISQFLTFVLLYFVDARAATIGWAPSWYSTYRFVLTFAVGAAIVLSL 292
                 **********8888888888**************************************998 PP

>> ANAPC9  Anaphase-promoting complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.2   1.5e-05      0.13      57     101 ..     311     355 ..     302     359 .] 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.5e-05
      ANAPC9  57 llpaikeSqikawesaEriaqnliFdkddsdkevdededeedsak 101
                  ++a++eSq++a+e+ E   +  i  +d++++e + de e +s++
  KKY15250.1 311 RMRALRESQVNALEEEEEERRARIVSEDETEDEEEADEGEGESDS 355
                 5789**********9998888888888877776666555543333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       999  (0.0557198); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 2298.94
//
Query:       KKY15251.1  [L=998]
Description: hypothetical protein UCRPC4_g06407 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-07   31.1   0.7    2.3e-07   30.4   0.7    1.3  1  zf-C3H1    Putative zinc-finger domain
  ------ inclusion threshold ------
        2.3    8.7   4.3        1.9    8.9   0.3    2.9  2  FlaC_arch  Flagella accessory protein C (FlaC)


Domain annotation for each model (and alignments):
>> zf-C3H1  Putative zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.7   2.5e-11   2.3e-07       1      21 [.     892     912 ..     892     913 .. 0.96

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 2.5e-11
     zf-C3H1   1 LCpyElaGGvCnDpsCefQHF 21 
                 LC  E +G++C Dp Ce+QHF
  KKY15251.1 892 LCASEARGEICQDPACEDQHF 912
                 8******************** PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.4      0.31   2.8e+03      16      35 ..     429     448 ..     423     452 .. 0.59
   2 ?    8.9   0.3   0.00022       1.9       3      39 ..     531     567 ..     529     570 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.31
   FlaC_arch  16 letvkkeneelsksveelke 35 
                 + +  +e+ +++k + el++
  KKY15251.1 429 MRSKNEEIAQMRKHIAELEK 448
                 34444555566666666665 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00022
   FlaC_arch   3 delEnklsklsteletvkkeneelsksveelkenVkd 39 
                 +e++  l+ l+ e+e  ++++ e++++ e+l++++k+
  KKY15251.1 531 KEIQAGLPLLDAEVERTRSKLAEIQQEAERLEQEIKR 567
                 799999999*************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (998 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1755  (0.0978861); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.09u 0.37s 00:00:01.46 Elapsed: 00:00:00.57
# Mc/sec: 5268.02
//
Query:       KKY15252.1  [L=1060]
Description: putative atp binding [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-25   89.5   0.1    3.2e-24   86.1   0.1    2.1  1  AAA_11         AAA domain
    1.5e-18   67.1   0.0    2.5e-18   66.4   0.0    1.3  1  AAA_12         AAA domain
    1.2e-09   38.2   0.0    2.3e-06   27.5   0.0    2.4  2  AAA_30         AAA domain
      3e-08   34.1   0.0    6.1e-07   29.9   0.0    2.4  1  AAA_19         AAA domain
    1.2e-05   25.4   0.0    2.5e-05   24.3   0.0    1.5  1  ResIII         Type III restriction enzyme, res subunit
    0.00066   19.5   0.0     0.0025   17.6   0.0    2.0  3  DEAD           DEAD/DEAH box helicase
    0.00082   18.9   0.0     0.0017   17.8   0.0    1.5  1  PhoH           PhoH-like protein
     0.0093   16.4   0.0      0.057   13.8   0.0    2.3  2  AAA_16         AAA ATPase domain
  ------ inclusion threshold ------
      0.031   13.8   0.0      0.071   12.6   0.0    1.6  1  UvrD-helicase  UvrD/REP helicase N-terminal domain
      0.082   12.1   0.0       0.14   11.4   0.0    1.3  1  DUF2075        Uncharacterized conserved protein (DUF2075)
       0.13   11.7   0.0        2.8    7.5   0.1    2.5  2  TilS_C         TilS substrate C-terminal domain


Domain annotation for each model (and alignments):
>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.1     2e-27   3.2e-24       2     256 ..     368     748 ..     367     752 .. 0.76

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 2e-27
      AAA_11   2 lndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgneeeri 100
                 l++sq+ a++++l+++  ++iqGPPGtgKT + v+ l+ l      +++  ++p i v+a++N A D+ll  +++          +p+ +R+g  +  +
  KKY15252.1 368 LDNSQWSALHRILTKQL-AIIQGPPGTGKTYVSVAALKIL-----LANKCPEDPPIIVAAHTNHALDQLLRHVAK---------FEPDYIRLGGRS--T 449
                 89*************96.************9999999999.....4678999******************99999.........***********9..5 PP

      AAA_11 101 seavksvsleekvekrlekee.............................................................................. 121
                 ++++k+    ++v+++l+  +                                                                              
  KKY15252.1 450 DDEIKRRA-LYEVRRSLKIPPvkggcfvssihqhkattaelletlapitcsrddatpilgselfhslglltneqleslsvgtaqwtggdstnedplsmw 547
                 66666666.466777776666788888887777777888888888888888888888888888888888888888888888888888888888888888 PP

      AAA_11 122 ...................kaqlakeiskeleklakelrafeeeeek.................................................... 149
                                    + +  ++ ++e e+l++   +      +                                                    
  KKY15252.1 548 lgksvipfqvsyrdgtygfQEETESQGDQEYEQLKELEAE------Qgveeedrdilngtykaigdaltvprsaytaagtaerylerstdlwtipsaar 640
                 8888888888888887765222222233333333332222......02233457889999999**********************97777777766554 PP

      AAA_11 150 .eklkkskekskskleqerrklkkerkelskeleeaeesleeevldeaeivltTlsgag..sklleklakkfdvviIDEAaqavEpstliPlrlgakkv 245
                        +++ k+  ++e r   ++ +++ +e++  + +  + +l+++++v  T++g +  ++l+++l  + ++++I EAa a+E+ + ++  +  +++
  KKY15252.1 641 gPVYSFLQKTAKEIIREEFRSRARSYQRVCQEVQIGKWERDAAILQTCKVVGLTMTGLSkyRPLISSL--EPKIILIEEAAEALEAPVAVACVESLQQL 737
                 433333333333334444444444444444555555555559**************986225667777..9**************************** PP

      AAA_11 246 vLvGDpkQLpa 256
                 +LvGD++QL++
  KKY15252.1 738 ILVGDHQQLQP 748
                 *********99 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   1.5e-21   2.5e-18       2     181 ..     763     956 ..     762     960 .. 0.80

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 1.5e-21
      AAA_12   2 erSlferllkkekekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkreleaqealeepleplvfidvekseeekekkeksyiNeeEaelvvklve 100
                 + Slferl++++  ++ +L  q Rm+pe   +  + +Yk kL+d++sv +r+       + ++ +l +++ +  e+ +++   s++Ne Ea ++v + +
  KKY15252.1 763 QISLFERLVRNG-IPYDTLLRQRRMDPEFR-LLLTPIYK-KLEDHPSVVNRPFV-----PGCKFKLWMFSHDFLESADSS--FSKMNEREALMIVAFFN 851
                 67**********.999************75.56678997.8***********99.....666667777777766666664..9**************** PP

      AAA_12 101 kllkkgseeerkkigvitpYraqvellkkklkekeeeksekeievntvdgfQGrekdviilslVRs.......nekk...................... 170
                 +l+ +g+    + i v+ +Y+aq +l+ ++l+++++ +  + ++v tvd++QG+e+ v++lsl          +  k                      
  KKY15252.1 852 YLVLNGVPI--HGITVLVFYNAQRKLILRELRKSSRLA-GHYLNVVTVDSYQGEENAVVLLSLPEDfgkmdggK--Ktpspkksqqskldspggwtkya 945
                 ********9..9********************877776.567********************977733333220..03344444555566666666665 PP

      AAA_12 171 eigflkderrl 181
                 + g ++d rrl
  KKY15252.1 946 DGGVVQDDRRL 956
                 66677777776 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.4e-09   2.3e-06       2      64 ..     368     432 ..     367     456 .. 0.87
   2 !    8.2   0.0    0.0012       1.9      81     130 ..     674     748 ..     638     757 .. 0.63

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.4e-09
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaag....grviglAptgkaAkvLae 64 
                 l+++Q +a+ ++lt++  +a+++Gp+GtGKt++  a+ +++ a++     ++i++A+t+ a ++L +
  KKY15252.1 368 LDNSQWSALHRILTKQ--LAIIQGPPGTGKTYVSVAALKILLANKcpedPPIIVAAHTNHALDQLLR 432
                 7899**********99..9*************988887777776667889***********999754 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0012
      AAA_30  81 k...............................grarlepgtllivDEagmv.dtkqlaallkaaekagakvilvGDerQlas 130
                 +                               +     + +++++ Ea+ +  +  + a ++++++    +ilvGD++Ql++
  KKY15252.1 674 QigkwerdaailqtckvvgltmtglskyrpliS---SLEPKIILIEEAAEAlEAPVAVACVESLQQ----LILVGDHQQLQP 748
                 555555555555555555555665655543321...223478888888766466666677777766....**********97 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   3.7e-10   6.1e-07       1     143 [.     372     748 ..     372     751 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 3.7e-10
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.............................. 68 
                 q +a++  l++++ ++ ++pGtGKT+v ++++++l++++  +  +i+++a t++A ++l   +a+++ +                              
  KKY15252.1 372 QWSALHrILTKQLAIIQGPPGTGKTYVSVAALKILLANKCPEDPPIIVAAHTNHALDQLLRHVAKFEPDyirlggrstddeikrralyevrrslkippv 470
                 566776688999***************************998899**************9999555444999999888888888888888888888888 PP

      AAA_19  69 .............atTiHrlal............................................................................. 77 
                              a       +                                                                             
  KKY15252.1 471 kggcfvssihqhkA-------Ttaelletlapitcsrddatpilgselfhslglltneqleslsvgtaqwtggdstnedplsmwlgksvipfqvsyrdg 562
                 88888555555552.......034444456666667777777777777777777999999999999999999999999999999999999999999999 PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  KKY15252.1 563 tygfqeetesqgdqeyeqlkeleaeqgveeedrdilngtykaigdaltvprsaytaagtaerylerstdlwtipsaargpvysflqktakeiireefrs 661
                 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

      AAA_19  78 ...............................ldfddlltealelle......eaeeekklqeeellivDEfqdvd..elqyrLlkallgekkklllvGD 137
                                                l                    ++   + l e +++++ E+ +    +++++ ++ l    ++l+lvGD
  KKY15252.1 662 rarsyqrvcqevqigkwerdaailqtckvvgL-------------TmtglskYRPLISSL-EPKIILIEEAAEALeaPVAVACVESL----QQLILVGD 742
                 99999999998888887766666444333222.............022322344444556.77788999987643144444444444....57999999 PP

      AAA_19 138 pdQliy 143
                 ++Ql +
  KKY15252.1 743 HQQLQP 748
                 999865 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.6e-08   2.5e-05       5      93 ..     369     452 ..     366     490 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.6e-08
                 -HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS- CS
      ResIII   5 reyQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkee.kflflvprkslleqtleefkkflseaykeigkkvsgdk 93 
                  + Q++a+ ++l       ++ ++i+ + GtGKT+v+ a+l   l++k +e+  +++ +++++ l+q+l++++kf +++    g+  ++d+
  KKY15252.1 369 DNSQWSALHRIL------TKQLAIIQGPPGTGKTYVSvAALKILLANKCPEDpPIIVAAHTNHALDQLLRHVAKFEPDYIR-LGGRSTDDE 452
                 567999999998......456789*************555555666666666899999*******************9864.555444444 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.6   7.5e+03      57     110 ..     121     180 ..     110     188 .. 0.58
   2 !   17.6   0.0   1.6e-06    0.0025       3      91 ..     371     453 ..     369     468 .. 0.85
   3 ?   -3.8   0.0       5.9   9.6e+03      79     110 ..     569     607 ..     562     613 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.6
                 HHHHHHHHHHHHHHTTTST.........SEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  57 reLaeqtlnnlkkfkkyid.........lrvlliiggvaardqlskldngvdivvgtpgrldd 110
                 +e++ q+++++ k++++++         l+++  +    ++d ++ l++ v+++v  p + dd
  KKY15252.1 121 EEIMSQVASDAFKITNNVSgpwasrqsyLETH--Y-TLLREDSQRSLREAVQMFVKSPAMSDD 180
                 55666666666666665333444332222222..1.233455566666668888888877766 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.6e-06
                 HHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardql 91 
                  Q +a++ il+++  +++++ G+GKT + ++++l+i++ +k  + p +++ + t     q l+++ kf    i+      +gg +++d++
  KKY15252.1 371 SQWSALHRILTKQLAIIQGPPGTGKTYV-SVAALKILLANKCPEDPPIIVAAHTNHALDQLLRHVAKFEPDyIR------LGGRSTDDEI 453
                 5999**********************99.88889999999***************************9874243......4555555554 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 5.9
                 EEEETTSSHHHHHHHH.......HTTCSEEEEEHHHHHH CS
                 xxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxx RF
        DEAD  79 lliiggvaardqlskl.......dngvdivvgtpgrldd 110
                 +   +g+++ +ql++l       +++ di+ gt + + d
  KKY15252.1 569 ETESQGDQEYEQLKELeaeqgveEEDRDILNGTYKAIGD 607
                 555678888888888854433322338888888877666 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.1e-06    0.0017       6      44 ..     369     406 ..     366     420 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.1e-06
                 SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHH CS
        PhoH   6 tkeQkeylealkkndivfaiGpaGtGKtylavalaveal 44 
                 +++Q ++l+ + ++++ ++ Gp GtGKty++va a+++l
  KKY15252.1 369 DNSQWSALHRILTKQLAIIQGPPGTGKTYVSVA-ALKIL 406
                 5789999***********************997.45555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.1   3.5e+03      43     134 ..      96     180 ..      94     209 .. 0.62
   2 !   13.8   0.0   3.5e-05     0.057      15     106 ..     375     449 ..     371     503 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.1
      AAA_16  43 ellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleealaavpelagaeasrllellkrll.allsrde 134
                 + lra  ++g+ f +g+c +    ip s  + ++  +++ ++  ++   s  ++  +  le+ ++    l+ ++ ++l+e+++ ++ + + +d+
  KKY15252.1  96 QYLRATDQTGITFNSGQCLSE---IPTSEeIMSQV-ASDAFKITNNV--SGPWASRQSYLETHYT---LLREDSQRSLREAVQMFVkSPAMSDD 180
                 556555555677777777777...77766677777.43666666555..4446666666666666...44444447777777777755555544 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3.5e-05
      AAA_16  15 alervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala 106
                 al+r+ +   +l ++ G++G+GK+ +  ++l+ l ++       kc +        +++ a+ +++ l qll++ ++  +e++  +l ++ +
  KKY15252.1 375 ALHRILTK--QLAIIQGPPGTGKTYVSVAALKILLAN-------KCPED------PPIIVAAHTNHALDQLLRHVAK--FEPDYIRLGGRST 449
                 56666666..6899*************9999877666.......99999......5555555577999*99999444..5555444444444 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.3e-05     0.071       2      68 ..     369     443 ..     368     469 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.3e-05
                    SHHHHHHHHS..-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH......H CS
  UvrD-helicase   2 npeqreaias..lggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRiee......a 68 
                    +++q++a++   +++  ++   +G+GKT+v ++    l++++  e   i+v   Tn A + l   +++      +
     KKY15252.1 369 DNSQWSALHRilTKQLAIIQGPPGTGKTYVSVAALKILLANKCPEDPPIIVAAHTNHALDQLLRHVAKfepdyiR 443
                    679******99555556667779*******999998888888666666**********99988877775555442 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.5e-05      0.14       1      25 [.     382     406 ..     382     439 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.5e-05
     DUF2075   1 kavvlVtGvaGtGKtvvllnllael 25 
                 k++ +++G +GtGKt+v +++l  l
  KKY15252.1 382 KQLAIIQGPPGTGKTYVSVAALKIL 406
                 6899***********9988776655 PP

>> TilS_C  TilS substrate C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.19     3e+02       9      38 ..     567     596 ..     559     618 .. 0.85
   2 ?    7.5   0.1    0.0017       2.8      10      39 ..     653     682 ..     647     687 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.19
                 TSEEEBTTSSSEEEHHHHHHHCT--HHHCC CS
      TilS_C   9 gerlqpagrggsrkLKklfqeagvPpwlRd 38 
                 +e+   +g +   +LK+l  e+gv  + Rd
  KKY15252.1 567 QEETESQGDQEYEQLKELEAEQGVEEEDRD 596
                 5667778999999*************9999 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0017
                 SEEEBTTSSSEEEHHHHHHHCT--HHHCCC CS
      TilS_C  10 erlqpagrggsrkLKklfqeagvPpwlRdr 39 
                 e ++ ++r ++r+ ++++qe ++  w+Rd 
  KKY15252.1 653 EIIREEFRSRARSYQRVCQEVQIGKWERDA 682
                 55677899********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1060 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.87u 0.37s 00:00:01.24 Elapsed: 00:00:00.54
# Mc/sec: 5882.53
//
Query:       KKY15253.1  [L=1127]
Description: putative triglyceride lipase-cholesterol esterase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-24   85.5   0.3    1.8e-23   83.5   0.3    2.1  1  Abhydrolase_1   alpha/beta hydrolase fold
    3.8e-22   77.6   0.0    7.6e-22   76.7   0.0    1.5  1  Abhydro_lipase  Partial alpha/beta-hydrolase lipase region
    3.9e-05   24.3   2.1        1.2   10.1   0.1    5.5  5  WD40            WD domain, G-beta repeat
    0.00011   21.6   0.0      0.032   13.5   0.0    2.3  2  Hydrolase_4     Serine aminopeptidase, S33
     0.0003   20.5   0.1       0.12   12.0   0.0    2.2  2  FSH1            Serine hydrolase (FSH1)
  ------ inclusion threshold ------
      0.083   12.7   0.1         15    5.3   0.0    2.4  2  Abhydrolase_2   Phospholipase/Carboxylesterase
        5.9    5.0  13.7         11    4.0  13.7    1.3  1  Nop14           Nop14-like family


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.3   6.8e-27   1.8e-23       1     255 [.     653     949 ..     653     951 .. 0.83

  Alignments for each domain:
  == domain 1  score: 83.5 bits;  conditional E-value: 6.8e-27
                    SEEEEE-STTTCGGG.....GTTGHHHHHHHHT....TSEEEEEEETTSTTSSSTTTGB............CHHSHHHHHHHHHHHHHHCTTSSEE CS
  Abhydrolase_1   1 pvlvilhGlpgssdv.....waerglapaLakd....gfdvillDlrGvgySspapacin...........ddygtasvaddldrildalgddklt 76 
                    pv+ ++hGl+++s+v     + er l+     +    g+dv+l + rG+ yS+++    +           d++ + ++ +++d+i   + + ++ 
     KKY15253.1 653 PVVYLHHGLLMNSEVwvcitEEERNLPF----AlverGYDVWLGNNRGNKYSKKSTKF-SptspefwnfsmDQFAFHDIPNSIDYIISTTSQPSVS 743
                    79*************4444433333444....35555***************999974.459999******99*********************** PP

                    EEEETHHHHHHHHHHHHH...GGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH...... CS
  Abhydrolase_1  77 lvGhSmGGmialayaaey...perVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkf...... 163
                    ++G+S+G+++a+a ++ +   +++V+++++l++   a+s+  +   ++  + ++   +    +  ++ +++a + + ++++  +v  ++       
     KKY15253.1 744 YIGFSQGTAQAFATLSIHptlNDKVNCFIALAP---AMSPAGLSNGIVDALVKTSPDVLFLAFGRKSILSSATMWQSILYPPIFVRLIDMsltflf 836
                    *********************************...555555555555555555555666666666666777777777777444333333777799 PP

                    ..HCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHC.....................THHHHSEEEEEEETTCSSSCH.HHHHHHHH CS
  Abhydrolase_1 164 ..pdkskrfpssgsdnasslatgalksieqwpttdsaklllrlre.....................lknvlaptlvisgtsDplvpp.kaledlaq 235
                         + ++ ++  ++++  ++++ ks+ +w +  ++k++++++                       kn++ p+++++g sD lv++  +l +l  
     KKY15253.1 837 nwTGRNISPHQKLAAYPHLYSFTSTKSVVHWFQIIRNKSFQMYDDdtsnamsigasnyyykvakfpTKNIKTPIVLVYGGSDSLVDIkVMLKELP- 931
                    99***********************************************************************************9855555555. PP

                    CHTSEEEEEEETCSSSHHHH CS
  Abhydrolase_1 236 llpkkrlvvisdagHlafle 255
                      ++ +   i + +Hl+fl+
     KKY15253.1 932 --RHTYAQEIKHFEHLDFLW 949
                    ..557778888888888887 PP

>> Abhydro_lipase  Partial alpha/beta-hydrolase lipase region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.0     3e-25   7.6e-22       1      63 [.     601     671 ..     601     672 .. 0.96

  Alignments for each domain:
  == domain 1  score: 76.7 bits;  conditional E-value: 3e-25
  Abhydro_lipase   1 vseiirkhGypveeheVqTeDGYiLtlhRipaknk........svssklekkpvVlLqHGLlasSevwvln 63 
                     +++++  +Gy +eeh VqT+DGY+L+lhR++ ++         +  +++++kpvV+L+HGLl++Sevwv+ 
      KKY15253.1 601 FTDLCALWGYYAEEHIVQTSDGYLLGLHRLQFRKGespddtkvNAGPGSITKPVVYLHHGLLMNSEVWVCI 671
                     5789***************************99999*******999***********************85 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.014        36      13      35 ..     119     141 ..     111     144 .. 0.79
   2 ?    0.7   0.0      0.45   1.2e+03      12      35 ..     193     216 ..     188     217 .. 0.82
   3 !   10.1   0.1   0.00048       1.2       2      34 ..     226     259 ..     225     263 .. 0.86
   4 ?   -0.3   0.0      0.93   2.4e+03       6      23 ..     275     293 ..     269     307 .. 0.82
   5 ?    0.8   0.1       0.4     1e+03      20      35 ..     479     493 ..     471     493 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.014
                 EEEEEEETTSSEEEEEETTSEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvr 35 
                 ++ +    d +w++sG+ Dg +r
  KKY15253.1 119 INTVTATADMRWVFSGGSDGYIR 141
                 66666677789*****88****9 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.45
                 SEEEEEEETTSSEEEEEETTSEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvr 35 
                 sv+sla ++ g wl+sG + g +r
  KKY15253.1 193 SVYSLAAQRQGLWLLSGLESGGIR 216
                 6999************96666665 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00048
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtv 34 
                 + + +l  H s v++l+  +d + l+sGs+D+tv
  KKY15253.1 226 KEIAVLQKHtSAVSALQLASDEHSLLSGSWDKTV 259
                 66788999*777****9999999999*******9 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.93
                 EEESS.SSEEEEEEETTSS CS
        WD40   6 tltGH.ssvtslafspdga 23 
                 + tGH + ++++ f p+++
  KKY15253.1 275 SSTGHaGQISAIEFRPESS 293
                 458**777****9999876 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.4
                 TTSSEEEEEETTSEEE CS
        WD40  20 pdgawlasGsdDgtvr 35 
                 +d+++l s+s Dgt+r
  KKY15253.1 479 SDSTFL-SSSIDGTIR 493
                 577887.79******8 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.3e-05     0.032      24     116 ..     679     783 ..     651     869 .. 0.87
   2 !    5.8   0.0    0.0028       7.2     186     209 ..     902     925 ..     878     945 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.3e-05
  Hydrolase_4  24 aeaLaaqGfavyalDhrGhGrse.........gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypd...kvaglilsaP 109
                    aL+++G++v+  ++rG   s+         ++ + ++  +    D+   ++ + ++ ++  +  +G S G + a++ l  +p    kv+ +i  aP
   KKY15253.1 679 PFALVERGYDVWLGNNRGNKYSKkstkfsptsPEFWNFSMDQFAFHDIPNSIDYIISTTSQPSVSYIGFSQGTAQAFATLSIHPTlndKVNCFIALAP 776
                  4589******************99*****9999999999999999***********************************888877779********* PP

  Hydrolase_4 110 alkikak 116
                  a++++  
   KKY15253.1 777 AMSPAGL 783
                  *998744 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0028
  Hydrolase_4 186 raakitlPllllhGeaDkvvdpea 209
                   +++i++P+ l++G++D +vd + 
   KKY15253.1 902 PTKNIKTPIVLVYGGSDSLVDIKV 925
                  67899***************9654 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   4.6e-05      0.12      63     127 ..     703     765 ..     686     825 .. 0.81
   2 !    6.2   0.0    0.0029       7.3     154     178 ..     900     924 ..     848     945 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.6e-05
        FSH1  63 kseeeeesraWfrkkdekneyegleesldavkdyikengpfdGiiGFSqGaalaallaslleell 127
                 +++ + +s  +++ + ++ ++ ++ +s+d++  +   ++p +  iGFSqG+a a + +s   +l+
  KKY15253.1 703 STKFSPTSPEFWNFSMDQFAFHDIPNSIDYIISTT--SQPSVSYIGFSQGTAQAFATLSIHPTLN 765
                 5666677777888888899************8875..5688**********99887776655544 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0029
        FSH1 154 yyeedkiqtptLhvlGelDtvvdee 178
                  + +++i+tp++ v+G +D++vd +
  KKY15253.1 900 KFPTKNIKTPIVLVYGGSDSLVDIK 924
                 2378999***************955 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0058        15     107     141 ..     742     779 ..     720     794 .. 0.78
   2 ?    4.7   0.0    0.0087        22     145     184 ..     900     935 ..     883     946 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0058
                    EEEEEETHHHHHHHHHHHT-SS...--SEEEEES---T CS
  Abhydrolase_2 107 iiigGFSqGaalalylaltlpk...klggivafsgalp 141
                    +  +GFSqG+a a ++  + p+   k+ + +a+  a++
     KKY15253.1 742 VSYIGFSQGTAQAFATLSIHPTlndKVNCFIALAPAMS 779
                    6679*******999998888776668888888776665 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0087
                    GTTTTS-GGGGG-EEEEEEETT-SSS-HHHHHHHHHHHHT CS
  Abhydrolase_2 145 klessatavtkklpilqiHgeeDpvvplalgkaakevlkk 184
                    k++   t++  k+pi++++g  D +v++ ++ +  + ++ 
     KKY15253.1 900 KFP---TKNI-KTPIVLVYGGSDSLVDIKVMLKELPRHTY 935
                    333...5555.89**************9988776666555 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0  13.7    0.0044        11     358     428 ..       5      72 ..       2     116 .. 0.42

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0044
       Nop14 358 dddlveseseeeeeeeeedeeeeedeeeeeeeeededdlsdleseeeeeedeleeelleeekkaaeekkek 428
                 d+d+   +se+ee+e+e+++e+e+  +   + eed  d+ d+ ++++ ++de +  ++++++ +a ++ ++
  KKY15253.1   5 DEDERGPGSEAEESENENENEDETMRD---DGEEDAVDEGDDGDSSSASDDESDTAKPQDSQANADDRPNS 72 
                 222233333332222222222222222...22223333333333333344443333333333222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       826  (0.0460706); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.00u 0.37s 00:00:01.37 Elapsed: 00:00:00.57
# Mc/sec: 5995.11
//
Query:       KKY15283.1  [L=421]
Description: putative golgi apparatus membrane protein tvp38 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-14   54.6   3.1    1.4e-14   54.6   3.1    2.7  3  SNARE_assoc    SNARE associated Golgi protein
  ------ inclusion threshold ------
      0.097   12.2   0.6       0.17   11.4   0.6    1.4  1  DUF1700        Protein of unknown function (DUF1700)
       0.25   11.6   0.1       0.25   11.6   0.1    2.1  2  Glycophorin_A  Glycophorin A


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.079   4.7e+02      52      88 ..     106     151 ..      86     153 .. 0.51
   2 !   54.6   3.1   2.4e-18   1.4e-14       8     119 ..     150     260 ..     139     261 .. 0.93
   3 ?   -0.3   0.0      0.24   1.5e+03       6      41 ..     282     298 ..     273     321 .. 0.58

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.079
  SNARE_assoc  52 sekrvka....lerlverygfla.....llllrllpivPrdlvnyv 88 
                  +ek + +    +er+ +  g ++     ++   + pi+ + +++ +
   KKY15283.1 106 NEKIFTKlaplSERWKDTTGGWTilwamVFATAFPPIIGYGMCGTI 151
                  4444555444444554444444412222555555555555555555 PP

  == domain 2  score: 54.6 bits;  conditional E-value: 2.4e-18
  SNARE_assoc   8 vaaGvlfglllgtlvtslgallGaslayllgrylgrkalrrkllsekrvkalerlverygflallllrllpivPrdlvn.yvaGltrvsfkrFflatf 104
                  ++aG+++g++ g+++ + ++++G+++++l++r ++rk+++r + + kr+ al+  +++ g ++l ++rl+p +P++++n ++     v++  ++lat+
   KKY15283.1 150 TIAGFVYGVWEGWFIYASATVAGSFCSFLVSRTVLRKYVERLVKNDKRFAALTLTLKHDGLKLLCMIRLCP-LPYSISNgAISTFPTVHPVMYALATA 246
                  689********************************************************************.79*****55666677999******** PP

  SNARE_assoc 105 iGsipwalvyaylGs 119
                  +  +p++l+++++Gs
   KKY15283.1 247 L-VSPKLLIHVFIGS 260
                  *.89*********97 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.24
  SNARE_assoc   6 llvaaGvlfglllgtlvtslgallGaslayllgryl 41 
                  l++++Gv++                   ++ +g y+
   KKY15283.1 282 LSIIFGVVV-------------------GFTTGVYI 298
                  334444444...................44444444 PP

>> DUF1700  Protein of unknown function (DUF1700)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.6   2.8e-05      0.17      83     144 ..      75     138 ..      48     159 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.8e-05
     DUF1700  83 lavigLsllnlilvlipliviislvlsllvvalal..lvsplvllvksllkgfeelslnvfvsi 144
                  +++ Lsll+ ilv+i+++v+ +l++ +l++   +   ++pl    k   +g++ l + vf++ 
  KKY15283.1  75 ATFMKLSLLQRILVVIAAVVLNVLLILFLIFNEKIftKLAPLSERWKDTTGGWTILWAMVFATA 138
                 56899**************999999888888654423578888888888888888877777664 PP

>> Glycophorin_A  Glycophorin A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   4.1e-05      0.25      31      82 ..      55     104 ..      32     113 .. 0.73
   2 ?   -2.0   0.3      0.71   4.3e+03      61      72 ..     282     293 ..     276     307 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.1e-05
                    XXXXXXXXXXXXXX.XXXXSSSSSSS-TTHHHHHHHHHHHHHHHHHHHHHHH CS
  Glycophorin_A  31 eltirtevaaeqeetgereqlvhdFselvitliifgvmAgvigtillisYli 82 
                     ++ r +v  + e  +    ++  F +l +   i+ v+A+v++ +lli +li
     KKY15283.1  55 STSLRDNVINNAE--KAARRINATFMKLSLLQRILVVIAAVVLNVLLILFLI 104
                    3344444333333..46788999*************************9998 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.71
                    HHHHHHHHHHHH CS
  Glycophorin_A  61 tliifgvmAgvi 72 
                      iifgv+ g  
     KKY15283.1 282 LSIIFGVVVGFT 293
                    579****98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1076  (0.0600145); expected 358.6 (0.02)
Passed bias filter:                      635  (0.0354175); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.33s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 2634.40
//
Query:       KKY15284.1  [L=968]
Description: putative ccch zinc finger and smr domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-38  131.9   0.0    4.2e-38  131.2   0.0    1.3  1  Aldo_ket_red  Aldo/keto reductase family
    6.2e-14   52.1  14.3    6.2e-14   52.1  14.3    1.8  1  DUF1771       Domain of unknown function (DUF1771)
    2.5e-08   34.1   0.0      7e-08   32.7   0.0    1.8  1  Smr           Smr domain
    7.2e-07   29.0   3.2      0.001   18.9   0.1    2.4  2  zf-CCCH       Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    1.6e-06   27.9  11.4    0.00096   19.1   3.7    2.8  2  zf_CCCH_4     Zinc finger domain
    1.9e-05   24.3   9.9    0.00052   19.7   1.5    2.8  2  zf-CCCH_4     CCCH-type zinc finger
    9.2e-05   22.8   8.0      0.039   14.4   1.7    2.4  2  zf-CCCH_2     RNA-binding, Nab2-type zinc finger
  ------ inclusion threshold ------
      0.018   15.2   3.3        1.8    8.8   0.2    2.4  2  zf-CCCH_3     Zinc-finger containing family
       0.03   14.6   0.1       0.21   11.9   0.0    2.3  2  HBS1_N        HBS1 N-terminus
       0.19   11.8   0.0       0.48   10.5   0.0    1.7  1  SapB_1        Saposin-like type B, region 1
       0.83   10.4   5.1        8.4    7.1   5.1    2.3  1  Torus         Torus domain


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.2   0.0   2.6e-41   4.2e-38      26     292 ..     681     948 ..     680     950 .. 0.94

  Alignments for each domain:
  == domain 1  score: 131.2 bits;  conditional E-value: 2.6e-41
                   HHHHTT--EEE--TT-TTTHHHHHHHHHHHH....-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-... CS
  Aldo_ket_red  26 raleaGinffDtAevYgkgqseellGealkk....srkkreeviiatKvdlrdaeiksglskeniresleeslkrLgtdyvDllllHrpdpslp... 115
                   +a++ G+++fD A  Y   ++e++ G+ + +      +kree++++tK+      ++ +++ken ++  + + ++ g+ y+Dl+l+H p +  +   
    KKY15284.1 681 YAIKLGYRLFDGAYDY---SNEREAGQGIRRaideGLVKREEIFVTTKL------WNNYHKKENAIAMMKSQNEEWGLGYIDLFLIHFPVSLKYiep 768
                   5899************...888888876666666599************......**********************************999999** PP

                   .......................HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBS CS
  Aldo_ket_red 116 ......................sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliays 190
                                          i e+++alee v+ G +r+iGvSnf+ ++l  +k+ +k +i+++q+e++++  l + +l++l+k +++   ays
    KKY15284.1 769 etlkypcfwtdsartkvefenvPIRETWEALEEIVDLGIARSIGVSNFQGQSLIDLKRYAKKPISSLQIEHHPY--LVQPQLIDLAKYLNIVPTAYS 863
                   **************************************************99999*******************..********************* PP

                   TTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG-.---HHHH CS
  Aldo_ket_red 191 plggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalel.klseeev 286
                    +g  ++++  ++++ ++                +l  +e +  lak+++ ++aq+ lr+ +  ++++ vip++ n+e+l++nl++ ++ +l e+e+
    KKY15284.1 864 SFGPLSYRELGHKKSGTP----------------TLMENEVITGLAKKYDRTPAQILLRWST--QRGVAVIPKSNNVERLKQNLEVTKVfNLEEDEL 942
                   ***988888888777776................4588999*********************..9**********************888******* PP

                   HHHHHH CS
  Aldo_ket_red 287 aeldel 292
                   +++ +l
    KKY15284.1 943 KKISSL 948
                   **9887 PP

>> DUF1771  Domain of unknown function (DUF1771)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1  14.3   3.8e-17   6.2e-14       1      64 []     529     592 ..     529     592 .. 0.99

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 3.8e-17
     DUF1771   1 YerlRaeAdeharkrnelfekAaeAyrrGdgaaAkelseqGkehgekmeeanreAaeaIfeerN 64 
                 Y ++RaeA++h+  rn++++ Aa+A++r+d +aAk ls +G+  +  m++a+reAa+ ++eerN
  KKY15284.1 529 YLKYRAEAIKHGSIRNKFLQSAAQAWNRNDARAAKALSLRGQAENDAMRKAHREAARHLYEERN 592
                 89*************************************************************9 PP

>> Smr  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   4.3e-11     7e-08       1      59 [.     608     668 ..     608     685 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 4.3e-11
                 EE-TT--HHHHHHHHHHHHHHHHHTT-SEEEEE--STTSTT..HCHHHHHHHHHHHCSTTE CS
         Smr   1 lDLhglrraealnvletfldaasakglrsvevihGkGahag..vgvLrpavmgwLagkeav 59 
                 +DLhgl+ +ea++ le +l   sa g + +  i+G+G+h++  + +  +av+gwL++ ++v
  KKY15284.1 608 IDLHGLHPEEAIEYLESVLIPQSATGRKVIYAITGTGHHSKngKDKVGKAVRGWLNEWQYV 668
                 8**************************************7667999**********98777 PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   6.1e-07     0.001       5      26 ..     285     305 ..     283     306 .. 0.94
   2 !   10.2   0.5   0.00034      0.55       6      27 .]     311     331 ..     310     331 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 6.1e-07
                 CBCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH   5 lCrffmrtGyCkyGdrCkFaHg 26 
                  C++++ +G+C + + C+FaH+
  KKY15284.1 285 VCKYWLSSGSCAR-ADCRFAHD 305
                 6************.*******6 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00034
                 BCHHHHHS--TTGGG-SSBSCS CS
     zf-CCCH   6 CrffmrtGyCkyGdrCkFaHgq 27 
                 C+++m  G C  G+ C F+H++
  KKY15284.1 311 CKYWMN-GNCLAGSGCAFSHDP 331
                 ******.*************85 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.9   6.2e-05       0.1       1      19 []     286     304 ..     286     304 .. 0.94
   2 !   19.1   3.7   5.9e-07   0.00096       1      19 []     311     329 ..     311     329 .. 1.00

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.2e-05
   zf_CCCH_4   1 Ckfflq.GtCkkGdkCrFaH 19 
                 Ck++l  G+C + d CrFaH
  KKY15284.1 286 CKYWLSsGSCARAD-CRFAH 304
                 ************76.99999 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 5.9e-07
   zf_CCCH_4   1 CkfflqGtCkkGdkCrFaH 19 
                 Ck++++G+C  G+ C F+H
  KKY15284.1 311 CKYWMNGNCLAGSGCAFSH 329
                 ******************* PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   1.6    0.0011       1.9       2      22 .]     285     305 ..     284     305 .. 0.90
   2 !   19.7   1.5   3.2e-07   0.00052       1      22 []     309     330 ..     309     330 .. 0.98

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0011
   zf-CCCH_4   2 lCpyfa.kGsCrfGdnCrFsHd 22 
                 +C+y++  GsC   d CrF+Hd
  KKY15284.1 285 VCKYWLsSGSCARAD-CRFAHD 305
                 8*****999***966.*****9 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 3.2e-07
   zf-CCCH_4   1 rlCpyfakGsCrfGdnCrFsHd 22 
                 ++C+y+++G+C  G+ C FsHd
  KKY15284.1 309 HVCKYWMNGNCLAGSGCAFSHD 330
                 79*******************9 PP

>> zf-CCCH_2  RNA-binding, Nab2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.5   0.00016      0.26       2      17 ..     286     304 ..     286     304 .. 0.99
   2 !   14.4   1.7   2.4e-05     0.039       2      17 ..     311     329 ..     311     329 .. 1.00

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00016
   zf-CCCH_2   2 Crffpn...CtnpkCpFaH 17 
                 C+++     C +++C+FaH
  KKY15284.1 286 CKYWLSsgsCARADCRFAH 304
                 ******************* PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.4e-05
   zf-CCCH_2   2 Crffpn..C.tnpkCpFaH 17 
                 C++++n  C  +  C F+H
  KKY15284.1 311 CKYWMNgnClAGSGCAFSH 329
                 ******************* PP

>> zf-CCCH_3  Zinc-finger containing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.2    0.0011       1.8      30      54 ..     279     304 ..     274     309 .. 0.83
   2 ?    6.7   0.3     0.005       8.1      34      54 ..     308     329 ..     305     337 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0011
   zf-CCCH_3  30 alGsetvctlWq.egrclrevckfrh 54 
                 a  s +vc++W   g c r+ c+f h
  KKY15284.1 279 ATTSPIVCKYWLsSGSCARADCRFAH 304
                 566789*****6379*********99 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.005
   zf-CCCH_3  34 etvctlWqegrclr.evckfrh 54 
                 + vc++W +g+cl  + c f h
  KKY15284.1 308 NHVCKYWMNGNCLAgSGCAFSH 329
                 5689999999998635688877 PP

>> HBS1_N  HBS1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       1.4   2.3e+03      16      56 ..      22      57 ..       8      59 .. 0.55
   2 ?   11.9   0.0   0.00013      0.21      32      72 ..     210     245 ..     205     249 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.4
      HBS1_N 16 eLsdedq.arLrscldevrevLgeeaskvtvtekqikeAlwk 56
                +L++ed+ ++L++ l +  +  g   ++    e+ i +Alw 
  KKY15284.1 22 DLDEEDKtDKLEDLLRKETSLTG---AP---LENVILDALWR 57
                56666665555555544333333...22...35556666665 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00013
      HBS1_N  32 vrevLgeeaskvtvtekqikeAlwkyyyDvekaldyllnkf 72 
                 +r+vLg     ++ t+++i+eAl  + yD+  +++ l +++
  KKY15284.1 210 LRSVLG-----DKKTKAEIEEALEANSYDIAGTMAALSKDN 245
                 79****.....44499******************9998776 PP

>> SapB_1  Saposin-like type B, region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0003      0.48      13      31 ..     210     228 ..     207     229 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0003
                 HHHHH-SS--HHHHHHHHH CS
      SapB_1  13 veklLkdNkTeeeIieaLe 31 
                 +++ L+d+kT++eI+eaLe
  KKY15284.1 210 LRSVLGDKKTKAEIEEALE 228
                 6789**************8 PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.1    0.0051       8.4      67      92 ..     305     330 ..     271     342 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0051
                 STT--B-HHHHHT--SSGGG-SSB-S CS
       Torus  67 ekesyfClfFarGlCakGkkCeylHr 92 
                   ++++C ++  G C  G+ C++ H+
  KKY15284.1 305 DLSNHVCKYWMNGNCLAGSGCAFSHD 330
                 44569********************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (968 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 6282.62
//
Query:       KKY15285.1  [L=976]
Description: putative ph domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-07   29.9   0.0    7.2e-06   26.5   0.0    2.3  2  PH        PH domain
    0.00078   19.8   0.0     0.0019   18.5   0.0    1.7  1  PH_9      Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0     8e-10   7.2e-06       3     104 ..      34     148 ..      32     149 .. 0.83
   2 ?    0.6   0.1     0.089   7.9e+02      16      26 ..     193     206 ..     178     253 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 8e-10
                 EEEEEEEETSSSSC.......SEEEEEEEEETTEEEEESST....TCTTESSEEEEEESTTEEEEEEEC.....TTSSSSTSEEEEEESTSSSTEEEEE CS
          PH   3 keGwLlkkgsgkkk.......swkkrwfvLkdsellyyknd....ksekdkepkgsislsncevvevva.....tedpkrkfcfelriverngsrtyll 85 
                  eG++lk    + +       +w ++++ L +++l+++++      +   + p ++i+l +++++ +++     ++ ++ ++++++ ++  ++ ++yll
  KKY15285.1  34 QEGYFLKLNDLDNNgranadrNWTECFAQLVGTVLSLWDAAaldaAGQDGEVPPTFINLADASIKMIETlptrnNDVEPLHNVLSISTA--GK-NRYLL 129
                 578855444444444566889***********************999999*****************99**975557777777777666..77.***** PP

                 EESSHHHHHHHHHHHHHHH CS
          PH  86 qasseeerkeWikaiqsai 104
                 +++s  ++++W + i+ a+
  KKY15285.1 130 HFNSLHSLTQWTAGIRLAM 148
                 *************999875 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.089
                 C...SEEEEEEEEE CS
          PH  16 k...swkkrwfvLk 26 
                 +    w+++w+v++
  KKY15285.1 193 GagtAWQRYWCVIT 206
                 13349*******98 PP

>> PH_9  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.1e-07    0.0019       1     112 [.      33     142 ..      33     147 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.1e-07
        PH_9   1 ykegivqrkllleskgkktplkkrgWkevyavlkklvLylykdee....esesaetedlkslknakllgkirlhhaLaekasdYkkkshvFrLqtadga 95 
                 y+eg+  + + l+++g+     +r+W e++a+l ++vL l          +  + ++++ +l +a    +i+++ +L ++ +d +   +v  + ta + 
  KKY15285.1  33 YQEGYFLKLNDLDNNGRAN--ADRNWTECFAQLVGTVLSLWDAAAldaaGQDGEVPPTFINLADA----SIKMIETLPTRNNDVEPLHNVLSISTAGKN 125
                 6888999999999999988..9*******************996633323333334444445555....9***************************** PP

        PH_9  96 eylfqtsdakevqeWvd 112
                  yl+  ++   + +W  
  KKY15285.1 126 RYLLHFNSLHSLTQWTA 142
                 ***************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (976 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.52
# Mc/sec: 5622.50
//
Query:       KKY15286.1  [L=838]
Description: putative mg2+ transporter zinc transport protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-10   38.2   0.4    9.8e-10   38.2   0.4    1.6  2  CorA      CorA-like Mg2+ transporter protein


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1      0.37   6.6e+03       9      29 ..      11      31 ..       6      43 .. 0.55
   2 !   38.2   0.4   5.5e-14   9.8e-10     200     287 ..     562     645 ..     529     650 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 0.37
        CorA  9 lsspteeeleeLaeelgldel 29
                l s+ ++++e+L+++l+ d +
  KKY15286.1 11 LISQIKADQEALRQQLNADRE 31
                333344444444444444444 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 5.5e-14
        CorA 200 elerllemlealrerleslqdtyssllserlNrvmkvLTvltaiflPlTlitGiyGmNfkglPelewsygypfvlllglmallailll 287
                 ++++l e+l +  ++les ++  +++++ ++ +++k+LT++t++flPlT+ t+i+Gm   ++P  ++    pf ++++++++ + l++
  KKY15286.1 562 DIDSLREQLFSGTSVLESRKSVEQTTITVQQGHNIKLLTLVTIFFLPLTFTTSIFGM--TNMPPDDNF--VPFGIVTVIICMPTYLMI 645
                 455567777777777777777778888888**************************9..568844444..488888888888777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       880  (0.0490825); expected 358.6 (0.02)
Passed bias filter:                      674  (0.0375927); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.36s 00:00:01.22 Elapsed: 00:00:00.54
# Mc/sec: 4651.16
//
Query:       KKY15287.1  [L=366]
Description: putative metallo-beta-lactamase superfamily protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-07   30.6   1.0      3e-07   30.6   1.0    2.0  2  Lactamase_B    Metallo-beta-lactamase superfamily
  ------ inclusion threshold ------
      0.022   14.3   0.6      0.099   12.1   0.1    2.4  2  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.31   2.8e+03     114     134 ..      21      41 ..      12      49 .. 0.73
   2 !   30.6   1.0   3.4e-11     3e-07      38     137 ..     102     207 ..      43     214 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.31
                  EECCCTEEEEEHECTTSTSCC CS
  Lactamase_B 114 dgnaggrralyvtggpghghg 134
                  + +++++  + +++++gh+h+
   KKY15287.1  21 ARIRLPVAQFMTPPIHGHTHM 41 
                  555566666777888888886 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 3.4e-11
                  HTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHH......TTCHCGCCEEEEETTTEECCCTEEEEEHECTT CS
  Lactamase_B  38 lglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkgll......lagvsadkpdvdeeeldgnaggrralyvtggp 129
                  +++k+  ++a++ +H+H+DH+G++g +++ t  ++g   ++++ ++++  + ++   ++         +++a ++ +    + ++ +g++++y   +p
   KKY15287.1 102 VDVKGGAIEAIVWSHWHFDHTGDVGRFPSSTVLVTGPGLKKEFFPPYPQSEESPLLASDFaarehrELTFNAHDSLHIGGLESIDYFGDGSFYLLNTP 199
                  4567788*************************************999999888888777788888777777777777777777778888888888888 PP

                  STSCCEEE CS
  Lactamase_B 130 ghghghgv 137
                  gh  gh++
   KKY15287.1 200 GHAIGHIC 207
                  88877776 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   1.1e-05     0.099      29      52 ..     107     130 ..      81     229 .. 0.69
   2 ?   -1.1   0.0      0.12   1.1e+03      36      46 ..     288     298 ..     286     333 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.1e-05
                    .SEEEEE-SS--HHHHGGGGCCCC CS
  Lactamase_B_2  29 ppidaVllthaHyDHlaglltlre 52 
                     +i+a++++h H+DH+ ++  +  
     KKY15287.1 107 GAIEAIVWSHWHFDHTGDVGRFPS 130
                    489*************98766655 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.12
                    -SS--HHHHGG CS
  Lactamase_B_2  36 lthaHyDHlag 46 
                    ++h+H+D++  
     KKY15287.1 288 VSHNHVDAVRS 298
                    79999999853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.51
# Mc/sec: 2139.17
//
Query:       KKY15288.1  [L=328]
Description: putative esterase lipase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-08   33.2   0.1    1.7e-07   31.0   0.0    2.1  2  DLH            Dienelactone hydrolase family
      5e-06   26.0   0.0    0.00034   19.9   0.0    2.1  2  Hydrolase_4    Serine aminopeptidase, S33
      3e-05   23.8   0.0    0.00014   21.6   0.0    1.8  1  Abhydrolase_1  alpha/beta hydrolase fold
    0.00034   19.4   0.1     0.0011   17.7   0.0    1.7  2  AXE1           Acetyl xylan esterase (AXE1)
    0.00042   19.9   0.0      0.015   14.8   0.0    2.2  2  Peptidase_S9   Prolyl oligopeptidase family
     0.0042   16.7   0.1     0.0045   16.6   0.1    1.2  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
  ------ inclusion threshold ------
      0.035   12.9   0.0      0.048   12.5   0.0    1.1  1  DUF1100        Alpha/beta hydrolase of unknown function (DUF1
      0.057   13.3   0.0       0.16   11.9   0.0    1.7  2  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   7.8e-11   1.7e-07       1     132 [.      21     143 ..      21     165 .. 0.79
   2 ?   -2.3   0.0       1.2   2.7e+03     141     163 ..     261     283 ..     253     307 .. 0.62

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 7.8e-11
         DLH   1 idaylatpkna.kkpvvvviqeifGvn.dnikdiserlaeeGYvalaPdlYarqaldpndeaeaaraldelvskvaeekvlddlkaavaylksvpevst 97 
                 i+++l++p+n+ + p+vvvi     v+ +   + + rla+eGY+al+ d  + ++  ++ ++   r+ + +++++   + ++ l    +yl s+++v++
  KKY15288.1  21 IAGVLYRPTNVsNPPGVVVIGPYSFVKeQAPLQYATRLADEGYAALIFDPRTVGE--SSGTPR--RLENPKMKNE---DAVSGL----DYLVSRGDVDE 108
                 6799*******999*******9999996666789*************88544443..333333..3333333333...556666....9********** PP

         DLH  98 kkvgvvGfCmGGalalllaaevpevdaavafYGls 132
                 +k+ +vG C GG  al++a+++++v+++++  G +
  KKY15288.1 109 SKLFLVGICQGGPEALDIASYEARVKGVASVTGYF 143
                 ****************************9988843 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.2
         DLH 141 akikapilalfgeeDefipadev 163
                 ak+++p l+++g++    pa+++
  KKY15288.1 261 AKLNKPALIIHGDNCMNAPAAKR 283
                 56777777777766555555442 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.5e-07   0.00034      23     139 ..      54     171 ..      49     207 .. 0.75
   2 ?    4.1   0.0     0.011        24     184     234 ..     257     305 ..     236     310 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.5e-07
  Hydrolase_4  23 laeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpel..plfllGhSmGGliallyllrypdkvaglilsaPalkikaklk 118
                   a +La++G+a +++D r  G+s g   ++++ +   +D+ + ++ ++++      +lfl+G   GG  al ++  +++ v+g+  +   ++ ++  +
   KKY15288.1  54 YATRLADEGYAALIFDPRTVGESSGTPRRLENPKMKNEDAVSGLDYLVSRGDVDesKLFLVGICQGGPEALDIASYEAR-VKGVASVTGYFRDHET-D 149
                  689********************************************977655556***************99876666.9999999988887754.4 PP

  Hydrolase_4 119 .appllklllkllgkllpklqv 139
                   +  ++ ++++  g  + ++++
   KKY15288.1 150 iYMICAGCVAWEPGADIGSMKM 171
                  3434444455555544444444 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.011
  Hydrolase_4 184 eeraakitlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHel 234
                  +  +ak++ P l++hG  D+ ++  a+++ +++++ k k+l + +   H  
   KKY15288.1 257 VPGVAKLNKPALIIHG--DNCMNAPAAKRHFDSIATKSKKLVWDNDTSHFQ 305
                  56678999*******9..77999999999***********99988888855 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   6.3e-08   0.00014      25     254 ..      58     307 ..      50     310 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 6.3e-08
                    HHHTTSEEEEEEETTSTTSSSTTTGB..CHHSHHHHHHHHHHH..HHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESE........... CS
  Abhydrolase_1  25 LakdgfdvillDlrGvgySspapacin.ddygtasvaddldri..ldalgddkltlvGhSmGGmialayaaeyperVkalvllga........... 106
                    La++g+  +++D+r vg+Ss  p+    + + + +    ld++  +   +  kl lvG ++GG  al  a+ y  rVk+++++ +           
     KKY15288.1  58 LADEGYAALIFDPRTVGESSGTPRRLEnPKMKNEDAVSGLDYLvsRGDVDESKLFLVGICQGGPEALDIAS-YEARVKGVASVTGyfrdhetdiym 152
                    7888********************99999************987899999999******************.8************77776666666 PP

                    .CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHH..HHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHH CS
  Abhydrolase_1 107 .idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaale..qrhrlvdalkfpdkskrfpssgsdnasslatgalksieqwpttdsak 199
                     ++ + +++  ++   +++p+  +g a  +ar   + ++ d +  +   +++ lv       k+ ++ +++ +   ++a +a++   + ++  +++
     KKY15288.1 153 iCAGCVAWEPGADIGSMKMPTPEQGEALYNARLERAKKARDLYEKTGevVYQPLV-----DPKVADPTTGSLAGLPGPAIWAWYGPWTLKNFENRY 243
                    6666666666666666666666666665555555544444444333211122222.....444555555566666666666666666666666666 PP

                    HHHHHHC.........THHHHSEEEEEEETTCSSSCH.HHHHHHHHC.HTSEEEEEEETCSSSHHH CS
  Abhydrolase_1 200 lllrlre.........lknvlaptlvisgtsDplvpp.kaledlaql.lpkkrlvvisdagHlafl 254
                       ++           + + ++p+l+i+g  D+++    a++ +++  +++k+lv + d+ H+ ++
     KKY15288.1 244 AVMSDLDhfsyttvpgVAKLNKPALIIHG--DNCMNApAAKRHFDSIaTKSKKLVWDNDTSHFQHY 307
                    55555556666666666666667777777..44444447777777774444677777777777666 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.37   8.3e+02      59     123 ..      12      76 ..       8      90 .. 0.63
   2 !   17.7   0.0   4.9e-07    0.0011     157     212 ..      92     147 ..      87     153 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.37
                 EEEEEGGGEEEEEEEEEES.SSSSEEEEEEEE-TT--..GGGHHHHHHHHHTT-EEEEEE-TTTS.. CS
        AXE1  59 ltfegvrgarikaklvlPkekeeklPavvefhGYegs..rgeihdllnyaaaGyavvvmdvRGqgge 123
                 +t+ + +g+ i + l +P+ +  + P vv    Y+    +   +     a +Gya +  d R  g +
  KKY15288.1  12 VTYPS-HGETIAGVLYRPT-NVSNPPGVVVIGPYSFVkeQAPLQYATRLADEGYAALIFDPRTVGES 76 
                 56665.4567999999999.55556766666666544114445556666778888888888876644 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 4.9e-07
                 HHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHH-SS-SEEEEES-SSSSHH CS
        AXE1 157 DavrlveivaslpevDeeRvavlGasqGGalalavaalekrikavvadyPfLsdfk 212
                 Dav  ++ + s   vDe++++ +G  qGG  al +a+ e r+k v++   +  d++
  KKY15288.1  92 DAVSGLDYLVSRGDVDESKLFLVGICQGGPEALDIASYEARVKGVASVTGYFRDHE 147
                 8999999999*************************************999988876 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.7e-06     0.015      10      76 ..      58     121 ..      51     151 .. 0.85
   2 ?    2.8   0.0     0.032        72     114     158 ..     230     279 ..     224     326 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.7e-06
                   HHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHH CS
  Peptidase_S9  10 ladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGy 76 
                   lad+Gy+ ++ ++r  g+ + + ++    ++ + + +D + ++++l+++g vd+++l++ G   GG 
    KKY15288.1  58 LADEGYAALIFDPRTVGESSGTPRR---LENPKMKNEDAVSGLDYLVSRGDVDESKLFLVGICQGGP 121
                   6899*********988877776666...778888889****************************96 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.032
                   HCCCC--TTTCHHHHHHHHHH-CGGG--......---EEEEEEETT-SSS- CS
  Peptidase_S9 114 eymewgnpeeneegykelspyspldnvk......aypplLlihGlaDdrvp 158
                   +y  w+ + + e+ y  +s +++    +       ++p L+ihG++  + p
    KKY15288.1 230 WYGPWTLK-NFENRYAVMSDLDHFSYTTvpgvakLNKPALIIHGDNCMNAP 279
                   55555554.55677888999988888778899999*********9766654 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1     2e-06    0.0045       4     157 ..      20     166 ..      17     298 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2e-06
                    EEEEEEEEE..TTSSSEEEEEEEESS-..CCT.CCCCHTTCHHCCHGGGHHHHHTT-EEEEEE-TTSTTS-S---TT..TTTHHHHHHHHHHHHHH CS
  Peptidase_S15   4 rLavdiyrPetkskeklPvlltrtPYg..kndelasdkalaleelelqdkvfvarGYavVvqdvrGtggSeGeftvg..dsdeaedgadvidWlak 95 
                     +a  +yrP  ++  + P ++   PY   k    ++ +++a+         ++++GYa ++ d r  g+S G        + + ed+++ +d l+ 
     KKY15288.1  20 TIAGVLYRP--TNVSNPPGVVVIGPYSfvK---EQAPLQYATR--------LADEGYAALIFDPRTVGESSGTPRRLenPKMKNEDAVSGLDYLVS 102
                    567789***..999999**********322...2333333332........99********************99886666678899999999999 PP

                    C.TTEEEEEEEEEECHHHHHHHHHCTT--TTEEEEEEECE-S.-TCCC.CSECTTEEBCCHHHHH CS
  Peptidase_S15  96 q.pwsnGkVgmtGiSYlGttqllaaatgvpalkaivpeaais.dlydd.yyregGlvrapgglsw 157
                      +  + k   +Gi  +G  +l +a+    ++k ++++ + + d  +d y+   G+v+++ g   
     KKY15288.1 103 RgDVDESKLFLVGICQGGPEALDIAS-YEARVKGVASVTGYFrDHETDiYMICAGCVAWEPGADI 166
                    98999999999999988888888888.77778888888875426666677788888877665444 PP

>> DUF1100  Alpha/beta hydrolase of unknown function (DUF1100)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.1e-05     0.048     161     292 ..       5     139 ..       2     150 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.1e-05
     DUF1100 161 lkyvlkqlelpvekkkitgflhlpktdkplpvvlvsaGldslqtdmyrlfrdylakkdiamltidlpsvGasskwkltedssll..hqav..lkeladv 255
                  +y+  ++++p ++++i+g l+ p+  ++ p v+v +    ++      +   la ++ a l  d  +vG ss  +   ++  +    av  l+ l++ 
  KKY15288.1   5 GQYTTEKVTYPSHGETIAGVLYRPTNVSNPPGVVVIGPYSFVKEQAPLQYATRLADEGYAALIFDPRTVGESSGTPRRLENPKMknEDAVsgLDYLVSR 103
                 589999*******************99999*******999999999999************************98755444444114555558999999 PP

     DUF1100 256 pyvdhtrvgliGfrfGanvavrlaflesekvkavval 292
                   vd  ++ l+G   G+  a  +a  e  +vk v+++
  KKY15288.1 104 GDVDESKLFLVGICQGGPEALDIASYEA-RVKGVASV 139
                 99***********999999999988874.78888776 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.1e-05      0.16       9      66 ..      96     153 ..      94     199 .. 0.80
   2 ?   -2.9   0.0       2.3   5.2e+03      58      84 ..     270     297 ..     247     314 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.1e-05
                 HHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSSSEEEEEEES--SB--SSEEEET CS
      BAAT_C   9 ainyllrhpkvkkdkigllGiSkGgelalllasflkkisavvlingsavvvegklvyk 66 
                 +++yl ++  v ++k  l+Gi++Gg  al +as+   ++ v +++g +  +e+  ++ 
  KKY15288.1  96 GLDYLVSRGDVDESKLFLVGICQGGPEALDIASYEARVKGVASVTGYFRDHETDIYMI 153
                 689**************************************99999877776666665 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.3
                 --SSEEEETTE...EE----B-GGG-EE CS
      BAAT_C  58 vvegklvykdes.kvlpelklsmeklkv 84 
                 ++ +++++  +  + +  +  +++kl +
  KKY15288.1 270 IHGDNCMNAPAAkRHFDSIATKSKKLVW 297
                 2333333322224455555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 2088.34
//
Query:       KKY15324.1  [L=601]
Description: putative integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.2e-114  382.2   8.1   2.1e-114  381.4   8.1    1.4  1  Ytp1      Protein of unknown function (Ytp1)
    1.8e-29  101.6   3.7    1.8e-29  101.6   3.7    3.2  4  DUF2427   Domain of unknown function (DUF2427)
      0.003   17.2   3.0      0.003   17.2   3.0    3.4  3  DUF998    Protein of unknown function (DUF998)


Domain annotation for each model (and alignments):
>> Ytp1  Protein of unknown function (Ytp1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  381.4   8.1  3.6e-118  2.1e-114       2     277 .]     293     583 ..     292     583 .. 0.97

  Alignments for each domain:
  == domain 1  score: 381.4 bits;  conditional E-value: 3.6e-118
        Ytp1   2 afvqvltgvvvllglgrgeevfnllAHfikGgvFflyGlltlarylGafaelGwaWnkkpkksk..sek.rivsaefveslliflYGitnvFlEhlagk 97 
                 +f+ ++tg v+++g++rg +vfn+lAHfikGg+Ff++Gll+l+r++G+fa++GwaWn kp++++  ++k r++s ef+es+liflYG+tnvFlEhla++
  KKY15324.1 293 GFACICTGGVAYAGIMRGPAVFNGLAHFIKGGIFFWFGLLALGRWMGCFADFGWAWNVKPSRAEvgQWKsRVPSSEFTESFLIFLYGATNVFLEHLAAW 391
                 7999*********************************************************7667899999**************************** PP

        Ytp1  98 ggewsakdlqHvsiavlfiggGllGlllesklvrkllekaveeaak...........eaeek.akvslnplPalvilltGilmsaHaQaselstkiHkq 184
                 ggew a+dl+Hvsi+++f+ggGl+G+l+es+++r+ll+++v+++             + +++ +k+ +np+P+l+i+l+G++ms+H+Q+s+ls+++Hkq
  KKY15324.1 392 GGEWVAQDLEHVSISIMFFGGGLCGMLVESQTIRSLLNASVTNMPMkpnptaeelnlRLQPRvYKAPMNPFPGLIIMLLGLMMSSHTQSSMLSSMVHKQ 490
                 *****************************************999878999999998755555699********************************** PP

        Ytp1 185 wGllLlaaavaRlitylllllkppssvlpsrpptellasflLiagglvFmesteetvealeeegldamfllnvtvgltallmawvllllalkg 277
                 wG+l++ +a+aR +ty+ll+lkpp+s+++srpp+el+++f+L++ggl+Fm+s++++v+ +e+++l+amfl++v +glta+lmaw++++la+kg
  KKY15324.1 491 WGTLFVFGALARGVTYFLLYLKPPTSIYASRPPSELITAFCLTSGGLIFMASNKDIVAGIERHHLNAMFLFTVGMGLTAFLMAWEIVVLAIKG 583
                 ******************************************************************************************995 PP

>> DUF2427  Domain of unknown function (DUF2427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   3.7   3.1e-33   1.8e-29       6     104 ..      72     169 ..      67     170 .. 0.96
   2 ?   -3.1   0.2       1.1   6.8e+03      24      41 ..     277     294 ..     275     296 .. 0.80
   3 ?    2.3   0.4     0.024   1.4e+02      55      95 ..     465     502 ..     460     511 .. 0.79
   4 ?   -2.3   0.1      0.64   3.8e+03      28      53 ..     556     581 ..     547     583 .. 0.78

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 3.1e-33
     DUF2427   6 tyfttdephksalwvHiilmtlalvvvyPvalvLslaksrwylpvqivnlvlavlglllghiykgstPelypnniyaklswillillavqvvlavllkl 104
                 +yf++ e h++ +++H++lm+la+v+++P+++++s+ak++++lpvq+++l+l+ +gll+g+i+ + tP+lypnn+++k++w  ++++ +qv++++ll++
  KKY15324.1  72 SYFANGE-HTGSMIAHAALMVLAWVFILPIGVMFSIAKHKLALPVQFLFLILNSIGLLFGIIFDAGTPDLYPNNAHHKIGWAATWIIGAQVLMGLLLAY 169
                 6888877.9**************************************************************************************9875 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.1
     DUF2427  24 lmtlalvvvyPvalvLsl 41 
                 lmt+a+ ++  ++l+L+ 
  KKY15324.1 277 LMTIAYTIIERMCLILGF 294
                 789999999888888876 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.024
     DUF2427  55 lvlavlglllghiykgstPelypnniyaklswillillavq 95 
                 l++++lgl++ + +++s+  + +  +++++++++++  ++ 
  KKY15324.1 465 LIIMLLGLMMSS-HTQSS--MLSSMVHKQWGTLFVFGALAR 502
                 688999988765.66666..7799*******9999877665 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 0.64
     DUF2427  28 alvvvyPvalvLslaksrwylpvqiv 53 
                  +++++ v++ L +    w ++v+ +
  KKY15324.1 556 NAMFLFTVGMGLTAFLMAWEIVVLAI 581
                 56788888888888888888887765 PP

>> DUF998  Protein of unknown function (DUF998)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   3.0   4.9e-07     0.003      27     131 ..      70     176 ..      61     199 .. 0.70
   2 ?   -0.0   4.2     0.097   5.8e+02      72     134 ..     286     348 ..     274     358 .. 0.79
   3 ?    2.9   3.2     0.012        72      26     124 ..     481     573 ..     465     591 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.9e-07
      DUF998  27 aiSeLgaeggpggwlfnaglvllgllvla.lavgllraargragragrlllavaglglvlagvfptdpgggsp.slsglvHglasavaflalavavlll 123
                  iS  ++ + +g  +  a+l++l+  +++ ++v +  a+++ a  +  l+l++  +gl++ ++f +++   +p   ++ + g+a+++   a +++ lll
  KKY15324.1  70 LISYFANGEHTGSMIAHAALMVLAWVFILpIGVMFSIAKHKLALPVQFLFLILNSIGLLFGIIFDAGTPDLYPnNAHHKI-GWAATWIIGAQVLMGLLL 167
                 6888888768888888999999998888856665555456666666666777*********************4444444.666666666666666677 PP

      DUF998 124 a.saarrra 131
                 a s++  ra
  KKY15324.1 168 AySRRSSRA 176
                 733333333 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.097
      DUF998  72 grlllavaglglvlagvfptdpgggspslsglvHglasavaflalavavlllasaarrrawal 134
                  r +l+++ ++ +  gv  ++++ g++ ++gl+H + ++++f   ++a+  +  ++   +wa+
  KKY15324.1 286 ERMCLILGFACICTGGVAYAGIMRGPAVFNGLAHFIKGGIFFWFGLLALGRWMGCFADFGWAW 348
                 56788888888888888889999888899************9999999997775555666666 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.012
      DUF998  26 haiSeLgaeggpggwlfnaglvllgllvlalavgllra...argragragrlllavaglglvlagvfptdpgggspslsglvHglasavaflalavavl 121
                 +++S       ++g+lf +g ++ g+ +++l +        +r +++ +++++l+ +gl ++++    +d+++g        H  a  ++ +++ + ++
  KKY15324.1 481 SMLSSMVH--KQWGTLFVFGALARGVTYFLLYLKPPTSiyaSRPPSELITAFCLTSGGLIFMASN---KDIVAGIE----RHHLNAMFLFTVGMGLTAF 570
                 45555555..8999999999999999999955544444666999999999999999998888876...88888887....3444455555556666666 PP

      DUF998 122 lla 124
                 l+a
  KKY15324.1 571 LMA 573
                 666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 3624.05
//
Query:       KKY15325.1  [L=1302]
Description: hypothetical protein UCRPC4_g06382 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-31  109.2   0.0    4.5e-31  108.2   0.0    1.5  1  Pkinase          Protein kinase domain
    4.1e-23   82.0   0.0    7.5e-23   81.1   0.0    1.4  1  Pkinase_Tyr      Protein tyrosine kinase
    9.3e-15   55.0   2.1    3.5e-07   30.7   0.1    5.1  5  Ank_2            Ankyrin repeats (3 copies)
    3.4e-13   49.8   5.1       0.11   13.2   0.1    6.5  6  Ank_4            Ankyrin repeats (many copies)
    4.6e-09   36.3   5.6       0.61   10.6   0.0    7.0  7  Ank              Ankyrin repeat
    2.1e-07   31.1   3.1       0.16   12.3   0.2    6.2  7  Ank_5            Ankyrin repeats (many copies)
    2.4e-06   27.5  11.2       0.03   14.9   0.1    7.4  8  Ank_3            Ankyrin repeat
     0.0054   17.4   0.0      0.043   14.5   0.0    2.5  2  Sel1             Sel1 repeat
  ------ inclusion threshold ------
      0.041   12.7   0.0      0.076   11.8   0.0    1.3  1  Pkinase_fungal   Fungal protein kinase
       0.16   10.9   0.1       0.81    8.6   0.0    1.9  2  Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.2   0.0   2.5e-34   4.5e-31      23     261 ..      90     362 ..      82     365 .. 0.81

  Alignments for each domain:
  == domain 1  score: 108.2 bits;  conditional E-value: 2.5e-34
                 TTEEEEEEEEECHCHCHHHH...HHHHHHHHHHHHHS...CTTB--EEEE..EEE.SSEEE...EEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHH CS
     Pkinase  23 tgkivAvKkikkekakkkke...kkvlrEikilkklk...hpnivrlyev..fee.kdely...lvleyveggeladllerkgslseeeakkiakqile 109
                 + + vA K++  ++a+ ++     ++++E +il + +   ++niv+l++v  fe+ ++ +y   l++e +e+g+l+++++ +++l+ ++   +   il 
  KKY15325.1  90 KFQYVAKKIVTSRDAQVTEAqqlASIVNEARILSNKSlrkSRNIVTLLGVswFERpDQGRYwpqLLVEAAEHGTLQQYVR-SKVLNFQTKTLLGLDILC 187
                 3455666666655555544477899*******98766669*******97532666533344578***************7.57777777788999**** PP

                 HHHHHHHTTEE-SS-SGGGEEEE.T.....TTE..........EEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHH....TTSCBSHHHHHHHHHH CS
     Pkinase 110 gleylHskgiiHrDlKpeNiLid.e.....kge..........lKitDFGlakelesssk...ltsfvgtseYlAPEvl....keneyskkvDvWslGv 185
                 gl+ylH + i+H+DlKp+NiL+  +                   Ki+DFG a  l+  ++   ++ +vgt  ++APE+      ++++  k+D++s G+
  KKY15325.1 188 GLNYLHIHDIVHCDLKPSNILVFlDrdpehG-AssdygvenvvAKICDFGSAVILSDYNTespFQARVGTLPWMAPEMElalpIDHGTLFKADIYSFGL 285
                 ********************98743455550.155555566679********99988777778**************9657677789999********* PP

                 HHHHH.HHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTS CS
     Pkinase 186 ilyel.ltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqh 261
                 +++++ ++g +pf g + ++ ++ +l +l +   i  +++ k +  s  +  a +ll + l+ +p +R+  e ++ h
  KKY15325.1 286 VMASVwMNGLTPFDGLHADDITAIKLAELSAYHTIDADMRAKANMTSLQQALASKLLIQTLAANPDHRFDLEAIMMH 362
                 **9874899***********9*******9888888888888888888889999*******************99988 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.0   4.2e-26   7.5e-23      25     257 ..      88     361 ..      76     363 .. 0.78

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 4.2e-26
                  TSSEEEEEEEEE....STTSSHHHHHHHHHHHHHHHT..S.-BTTB--EEEEEESSSS......EEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHH CS
  Pkinase_Tyr  25 ekkevkVavKtl....keeateeekeelleeakimkk..l.khpnivkllgvctkeep......llivteyvkgGdLlkfLrkkekekltlkdllsfa 109
                  ++k + Va K++     + +++++ +++++ea+i+++  l k +niv llgv   e+p        +++e +++G+L++++r+k    l++++++ + 
   KKY15325.1  88 QTKFQYVAKKIVtsrdAQVTEAQQLASIVNEARILSNksLrKSRNIVTLLGVSWFERPdqgrywPQLLVEAAEHGTLQQYVRSK---VLNFQTKTLLG 182
                  44455566666632212344556688999******762258899*********9444445667889*****************9...88899999999 PP

                  HHHHHHHHHHHHTTEEEST-SGGGEEEEE...............TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE....EEHHHHH CS
  Pkinase_Tyr 110 lqvAkGmeyLeskklvHrdlaarNvLlse...............nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk....ftsksDv 188
                  l++ +G++yL+ +++vH dl   N+L+                 n v+ki+DfG a  +++ ++ +  + +   + WmapE+  +         k+D+
   KKY15325.1 183 LDILCGLNYLHIHDIVHCDLKPSNILVFLdrdpehgassdygveNVVAKICDFGSAVILSDYNTESPFQARVGTLPWMAPEMELALPidhgTLFKADI 280
                  9*************************987779999********88899******999986666666677777899******86655434447789*** PP

                  HHHHHHHHHHHTTSSGTTTTSHHHH..........HHHHHHTTEES-BBTTSBHH.H.HHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 189 WsfGvllwEiftlgespypglknee..........vleklkegkrlekpekcpee.l.yelmkkcweedpeeRptfselve 257
                  +sfG ++  +  +g +p+ gl++ +          ++++++++ r +++ +  ++ l  +l+ + ++++p++R ++++++ 
   KKY15325.1 281 YSFGLVMASVWMNGLTPFDGLHADDitaiklaelsAYHTIDADMRAKANMTSLQQaLaSKLLIQTLAANPDHRFDLEAIMM 361
                  *****************8888777766666666667888888888777766554413257899999999999999998876 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.1     2e-10   3.5e-07      12      80 ..     694     773 ..     687     776 .. 0.76
   2 !    7.1   0.0    0.0046       8.3      25      81 ..     779     851 ..     770     853 .. 0.68
   3 !    9.2   0.0     0.001       1.8       2      73 ..     992    1074 ..     972    1081 .. 0.58
   4 ?    3.4   0.0     0.067   1.2e+02      13      72 ..    1129    1211 ..    1119    1222 .. 0.61
   5 ?    1.3   0.1      0.29   5.2e+02      11      57 ..    1171    1244 ..    1160    1254 .. 0.47

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 2e-10
       Ank_2  12 lvklLl..egadpn.kngktaLhyAakngnleivklLleh..ad......ndgrtpLhyAarsghleivklLlekgadin 80 
                 +vk L   + +++  ++g t L+ A+ + + e+v+lLl +  a+        g+tpL +A+  g+++i+ +L ++ga++ 
  KKY15325.1 694 FVKDLKafKCCELVnDEGFTLLQRAVTHKDDEMVELLLRKlaANsencgnTRGWTPLWLACLLGYFDIALMLANHGAKLS 773
                 566665443344322599*********9999*******97773333444366*********99**********99*9876 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0046
       Ank_2  25 ngktaLhyAakngnl.ei....vklLle.h.......adndgrtpLhyAars...ghleivklLlekgadinl 81 
                  g t+Lh   +  ++ +i    +k+L + h        ++ g+tpLh+       ++  ++++Lle+ga++++
  KKY15325.1 779 SGITVLHMLNRFKHRrQIevilLKALSDsHdglhieqSTKIGMTPLHMTFVGmdeSRGAAARVLLEHGANPTA 851
                 58899999999877745542222555545366555533377*****99976565557789999**99999986 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.001
       Ank_2    2 hlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh.....ad.ndgrt...pLhyAarsghleivklLl 73  
                  h+A++   ++++  ++ +gad+   +   +t Lh+Aa++    ++  L+e+     ++ + g+t   +L +A  +g  +++ lLl
  KKY15325.1  992 HIAIERRIDDVIMAFIeNGADLLamDgRQQTSLHVAAHYY-PACLMKLVEEvdalsQEeRGGKTmqeILTMANIHGF-DVIGLLL 1074
                  5666644335666677666665443245577777777764.466666666534433224334432224666655553.6655555 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.067
       Ank_2   13 vklLl.egadpn..k..ngktaLhyAakn...........gnleivklLleh....ad....ndgrtpLhyAars.ghleivklL 72  
                  v++Ll    +pn  +  +g t L +A+++           g+ +i+k++le      +    ++ + ++h Aa + +h  ++++ 
  KKY15325.1 1129 VQHLLdMDPRPNfvCgdKGATLLTTAVSGrmahqsslsypGH-QICKMILERypdpRNltlgEEDTGAIHRAAMWaNH-IALDMI 1211
                  566663333334542458999999999975555555555555.69999999556662244556666799999999444.444444 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.29
       Ank_2   11 elvklLl.egadpn..k...ngktaLhyAakngnleivklLleh..................ad...ndgrtpL 57  
                  +++k +l    dp+  +   ++  a+h Aa+  n+ ++ ++ +h                  a+    +g+t+L
  KKY15325.1 1171 QICKMILeRYPDPRnlTlgeEDTGAIHRAAMWANHIALDMIYQHiqdhnrrnpgsqvmfsqlANvkaAQGHTAL 1244
                  35566663223443331344556677777765432224555554433344444444443333223344566666 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.3   1.1e+04      15      43 ..     310     337 ..     309     339 .. 0.80
   2 !   10.0   0.0   0.00058         1      26      55 .]     703     731 ..     688     731 .. 0.82
   3 !   13.2   0.1   5.9e-05      0.11       2      41 ..     747     786 ..     734     800 .. 0.90
   4 !    7.5   0.0    0.0035       6.3       2      53 ..     821     877 ..     817     879 .. 0.82
   5 !   12.0   0.1   0.00014      0.25       2      43 ..     988    1028 ..     987    1030 .. 0.93
   6 ?    2.9   0.0       0.1   1.8e+02       3      30 ..    1194    1221 ..    1170    1252 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.3
       Ank_4  15 elvrlLlekgadinaqdnrsGetalhiAa 43 
                 +l++l  ++ +d +++  +  +t l+ A+
  KKY15325.1 310 KLAELSAYHTIDADMR-AKANMTSLQQAL 337
                 5677888899999999.777999999887 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00058
       Ank_4  26 dinaqdnrsGetalhiAakrgnveilklLl 55 
                  +  + n++G+t+l++A+ + + e+++lLl
  KKY15325.1 703 CCELV-NDEGFTLLQRAVTHKDDEMVELLL 731
                 45556.**********************97 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 5.9e-05
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhi 41 
                 +t+L  a+  g ++++  L ++ga + ++dn sG t lh+
  KKY15325.1 747 WTPLWLACLLGYFDIALMLANHGAKLSCVDNVSGITVLHM 786
                 799************************************8 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0035
       Ank_4   2 ltaLhyaai...sgrlelvrlLlekgadinaqdnrs..GetalhiAakrgnveilkl 53 
                 +t+Lh+ +    ++r  ++r Lle+ga++ a++++    +t++  + ++ +++ l+ 
  KKY15325.1 821 MTPLHMTFVgmdESRGAAARVLLEHGANPTASAPDGmdVMTPIGLCMSKLDYSLLRA 877
                 788888888888888899**************9995445599999998888888876 PP

  == domain 5  score: 12.0 bits;  conditional E-value: 0.00014
       Ank_4    2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAa 43  
                  ++++h a++    ++++  +e+gad+ a  +++++t lh Aa
  KKY15325.1  988 RPHIHIAIERRIDDVIMAFIENGADLLAM-DGRQQTSLHVAA 1028
                  678999999999*****************.*********998 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.1
       Ank_4    3 taLhyaaisgrlelvrlLlekgadinaq 30  
                  +a+h+aa+  ++ +++ ++++ +d n++
  KKY15325.1 1194 GAIHRAAMWANHIALDMIYQHIQDHNRR 1221
                  5677777777777777777776665555 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0051       9.2       2      24 ..     711     732 ..     710     741 .. 0.84
   2 !   10.5   0.1   0.00039      0.69       2      32 .]     746     777 ..     745     777 .. 0.83
   3 ?   -1.4   0.0       2.2     4e+03       2      14 ..     780     792 ..     779     806 .. 0.68
   4 !   10.6   0.0   0.00034      0.61       2      29 ..     820     851 ..     819     853 .. 0.79
   5 ?    3.2   0.1     0.076   1.4e+02       7      31 ..     992    1017 ..     991    1017 .. 0.86
   6 ?   -1.1   0.0       1.7   3.1e+03       4      11 ..    1022    1035 ..    1021    1079 .. 0.46
   7 ?   -2.3   0.0       4.1   7.4e+03      11      23 ..    1166    1179 ..    1147    1187 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0051
                 SBBHHHHHHHHTTHHHHHHHHTT CS
         Ank   2 GnTPLHlAatngkkriiklLLhG 24 
                 G+T L +A+t ++ ++++lLL +
  KKY15325.1 711 GFTLLQRAVTHKDDEMVELLL-R 732
                 9*******************9.3 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00039
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 G+TPL lA+  g  +i+ +L  hGA l  +dn
  KKY15325.1 746 GWTPLWLACLLGYFDIALMLAnHGAKLSCVDN 777
                 9********88877799655599*99998887 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.2
                 SBBHHHHHHHHTT CS
         Ank   2 GnTPLHlAatngk 14 
                 G T+LH+  ++++
  KKY15325.1 780 GITVLHMLNRFKH 792
                 99****7335555 PP

  == domain 4  score: 10.6 bits;  conditional E-value: 0.00034
                 SBBHHHHHH.......HHTTHHHHHHHH.TTTSTTC CS
         Ank   2 GnTPLHlAa.......tngkkriiklLL.hGAnlna 29 
                 G+TPLH+         +++    ++ LL hGAn++a
  KKY15325.1 820 GMTPLHM-TfvgmdesRGA---AARVLLeHGANPTA 851
                 9*****9.44466664666...8888********97 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.076
                  HHHH..HHTTHHHHHHHH.TTTSTTCBT CS
         Ank    7 HlAa..tngkkriiklLL.hGAnlnald 31  
                  H+A+  +++  ++i +++ +GA+l a d
  KKY15325.1  992 HIAIerRID--DVIMAFIeNGADLLAMD 1017
                  999988777..8******99***98866 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 1.7
                  BHHHHHH......H CS
         Ank    4 TPLHlAa......t 11  
                  T LH+Aa       
  KKY15325.1 1022 TSLHVAAhyypacL 1035
                  56888764333330 PP

  == domain 7  score: -2.3 bits;  conditional E-value: 4.1
                  HHTTHHHHHHHH.T CS
         Ank   11 tngkkriiklLL.h 23  
                  ++ +++i+k++L +
  KKY15325.1 1166 SYPGHQICKMILeR 1179
                  344499***99943 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.029        53      11      36 ..     706     731 ..     702     738 .. 0.84
   2 !   12.3   0.2   9.1e-05      0.16       3      46 ..     736     776 ..     734     786 .. 0.85
   3 ?   -1.4   0.0       1.9   3.4e+03      11      22 ..     815     826 ..     808     826 .. 0.76
   4 ?   -0.5   0.0      0.96   1.7e+03      32      49 ..     839     856 ..     837     860 .. 0.68
   5 ?   -3.1   0.0       6.4   1.2e+04      25      51 ..     925     948 ..     925     950 .. 0.80
   6 !    7.5   0.0    0.0029       5.2       2      26 ..    1007    1031 ..     991    1054 .. 0.83
   7 ?    0.4   0.0      0.51   9.1e+02      41      55 ..    1232    1246 ..    1227    1247 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.029
       Ank_5  11 rldgggntpLhvAakygaadvvrlLl 36 
                   + +g+t L  A+ +   ++v+lLl
  KKY15325.1 706 LVNDEGFTLLQRAVTHKDDEMVELLL 731
                 567899******************** PP

  == domain 2  score: 12.3 bits;  conditional E-value: 9.1e-05
       Ank_5   3 ehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltd 46 
                 ++ ++++ +++g+  tpL +A+  g++d++++L ++ga l + d
  KKY15325.1 736 AN-SENCGNTRGW--TPLWLACLLGYFDIALMLANHGAKLSCVD 776
                 44.5899999998..*******************9999877766 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.9
       Ank_5  11 rldgggntpLhv 22 
                  + + g+tpLh+
  KKY15325.1 815 QSTKIGMTPLHM 826
                 567889*****6 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.96
       Ank_5  32 vrlLlargadlnltdsrG 49 
                 +r+Ll++ga++++   +G
  KKY15325.1 839 ARVLLEHGANPTASAPDG 856
                 677777777777665554 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 6.4
       Ank_5  25 kygaadvvrlLlargadlnltdsrGlt 51 
                 +++a++ v+ L+    d +++ ++G++
  KKY15325.1 925 WQRALNSVLALI---IDDDMRRAHGES 948
                 578889999999...899999999976 PP

  == domain 6  score: 7.5 bits;  conditional E-value: 0.0029
       Ank_5    2 lehgpadvnrldgggntpLhvAak.y 26  
                  +e+g ad+ + dg+ +t LhvAa+ y
  KKY15325.1 1007 IENG-ADLLAMDGRQQTSLHVAAHyY 1031
                  5788.888999999999999999944 PP

  == domain 7  score: 0.4 bits;  conditional E-value: 0.51
       Ank_5   41 dlnltdsrGltaldl 55  
                   +n++ ++G tald+
  KKY15325.1 1232 LANVKAAQGHTALDY 1246
                  57999*********9 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0032       5.7       1      25 [.     710     734 ..     710     738 .. 0.88
   2 !   14.9   0.1   1.6e-05      0.03       2      29 ..     746     772 ..     745     774 .. 0.86
   3 ?   -2.1   0.0       5.6     1e+04       2      16 ..     780     795 ..     779     809 .. 0.68
   4 ?    2.1   0.0      0.24   4.2e+02       2      29 ..     820     849 ..     820     851 .. 0.71
   5 ?   -0.9   0.2       2.2   3.9e+03       7      29 ..     992    1013 ..     990    1015 .. 0.83
   6 ?    0.3   0.0      0.89   1.6e+03       2      12 ..    1020    1030 ..    1019    1041 .. 0.85
   7 ?   -1.8   0.0       4.5     8e+03      15      29 ..    1170    1183 ..    1164    1184 .. 0.78
   8 ?    0.8   0.2      0.61   1.1e+03       5      25 ..    1195    1214 ..    1194    1218 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0032
       Ank_3   1 nGetpLhlAarsgnleivkfLlenk 25 
                 +G t+L +A+ + + e+v++Ll++ 
  KKY15325.1 710 EGFTLLQRAVTHKDDEMVELLLRKL 734
                 589*******************965 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.6e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G+tpL lA++ g ++i+ +L + +ga +
  KKY15325.1 746 GWTPLWLACLLGYFDIALMLAN-HGAKL 772
                 9**************7777777.99987 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 5.6
       Ank_3   2 GetpLhlAarsgnl.e 16 
                 G t Lh+  r+ +   
  KKY15325.1 780 GITVLHMLNRFKHRrQ 795
                 8899999888888742 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.24
       Ank_3   2 GetpLh.lAarsgnl..eivkfLlenkgadv 29 
                 G+tpLh + +  +    + ++ Lle +ga++
  KKY15325.1 820 GMTPLHmTFVGMDESrgAAARVLLE-HGANP 849
                 788999855555555235799****.89997 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 2.2
       Ank_3    7 hlAarsgnleivkfLlenkgadv 29  
                  h+A++    +++ +++e +gad+
  KKY15325.1  992 HIAIERRIDDVIMAFIE-NGADL 1013
                  88888888899999999.8**98 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 0.89
       Ank_3    2 GetpLhlAars 12  
                  ++t Lh+Aa++
  KKY15325.1 1020 QQTSLHVAAHY 1030
                  69*******87 PP

  == domain 7  score: -1.8 bits;  conditional E-value: 4.5
       Ank_3   15 leivkfLlenkgadv 29  
                  + i+k++le + +d+
  KKY15325.1 1170 HQICKMILE-RYPDP 1183
                  5699*****.88887 PP

  == domain 8  score: 0.8 bits;  conditional E-value: 0.61
       Ank_3    5 pLhlAarsgnleivkfLlenk 25  
                  ++h+Aa+ +n+  ++++ + +
  KKY15325.1 1195 AIHRAAMWANHIALDMIYQ-H 1214
                  68*********99999988.4 PP

>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.4   4.2e+03      14      35 ..     292     317 ..     287     318 .. 0.74
   2 !   14.5   0.0   2.4e-05     0.043       5      35 ..     530     558 ..     529     561 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.4
        Sel1  14 lnGl....gvpkDpekAiewyekAAe 35 
                 +nGl    g+ +D + Ai++ e++A 
  KKY15325.1 292 MNGLtpfdGLHADDITAIKLAELSAY 317
                 57777664466799********9985 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.4e-05
        Sel1   5 yrLGmfylylnGlgvpkDpekAiewyekAAe 35 
                 y L    +y+nG +++ Dpe++++++++A e
  KKY15325.1 530 YELS--GCYFNGSMTKHDPELGLQFFKRAVE 558
                 8899..889********************76 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.3e-05     0.076     314     400 ..     184     283 ..     177     291 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.3e-05
  Pkinase_fungal 314 DaIkghrsLflkagiLHrDiSenNilit...dskke.........gerkglLiDLDlakelsddssesgarertGTleFmaievlkg..eeHs.. 392
                     D + g++ L+    i+H D    Nil+    d   e         ++    + D+  a+ lsd ++es  + r+GTl++ma e+  +  ++H   
      KKY15325.1 184 DILCGLNYLH-IHDIVHCDLKPSNILVFldrD--PEhgassdygvENVVAKICDFGSAVILSDYNTESPFQARVGTLPWMAPEMELAlpIDHGtl 275
                     6677888999.99*************985552..22456677887888899************9999999***********99988644557412 PP

  Pkinase_fungal 393 yrhDLESf 400
                     +  D+ Sf
      KKY15325.1 276 FKADIYSF 283
                     44566555 PP

>> Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00045      0.81     294     315 ..     191     212 ..     156     236 .. 0.75
   2 ?   -0.6   0.0      0.28   5.1e+02      20      88 ..    1201    1267 ..    1188    1269 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00045
  Pox_ser-thr_kin 294 lpdcenflhvDlkPdniLifds 315
                          +  +h DlkP niL+f +
       KKY15325.1 191 YLHIHDIVHCDLKPSNILVFLD 212
                      44567789************65 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.28
  Pox_ser-thr_kin   20 ilgdeiyfdyvisqidkkqkwspkikllryfkn.fsketlekiaetdYinpsyfqlkdkrfypanddlYh 88  
                       +  ++i +d ++++i+ +++  p  ++  +f +  + ++ +  +  dY+  s f+ + +   p+++d +h
       KKY15325.1 1201 MWANHIALDMIYQHIQDHNRRNPGSQV--MFSQlANVKAAQGHTALDYVAGS-FKDRSDEAKPVDEDYFH 1267
                       44699***************9999887..45543788888999999****97.56666688999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.48
# Mc/sec: 8232.29
//
Query:       KKY15326.1  [L=563]
Description: hypothetical protein UCRPC4_g06383 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-14   54.4   0.0    2.7e-14   53.5   0.0    1.4  1  HeLo      Prion-inhibition and propagation


Domain annotation for each model (and alignments):
>> HeLo  Prion-inhibition and propagation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   1.5e-18   2.7e-14       2     183 ..       6     209 ..       5     224 .. 0.76

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 1.5e-18
                 HHHS---HHHHHHHHHHTTTTEEEBGGGGGGHHHHHHHHHHHHHHHHHHHHHHTTT........................-SHH............... CS
        HeLo   2 lalGvvslaqlFsgcvkgfellsaarnlgkdyellrlkLdieqlRLlqWgeavgllspd.....................sdkrlddestr........ 71 
                 ++++  ++a +F+++ k+  ++s+ar++g+d +    kL++e  R+ +W  a+  l+ +                     +         +        
  KKY15326.1   6 FIISLGGVATIFDKSCKIWRVVSDARDYGEDIAMSMNKLEMEFFRFQAWWTALENLAVEprnrakispalsstsplasqlY---T-----Hiqhpvtta 96 
                 5666557**********************************************9998888877777777666555544331...1.....122333346 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CGG.......G-B--GGGS-HHHHHHH.HHHHHHHHHS----S-----.....EEE-SHHHHHHHHHHH CS
        HeLo  72 ralvleileqiealleefeklqeryglklekqdasssslalssereksfraefellkrlmrkaakkrqkrtslpkrlr.....Waivdkkkfeelvkdl 165
                 ++ vl+ leq+e+ll+e + l+   gl +++++ +  ++  ++ ++++  ++f+++++   ++ak   k ts +krl+     W   dk+++e+ ++d+
  KKY15326.1  97 ASSVLQSLEQLERLLSENHVLDVANGLPAQHTTIP-VTAGTANLNLNDDISRFRARHK---NYAKGLMKGTSWFKRLKydaapWKETDKTRIEKIIQDI 191
                 779************************99988765.5556666666666666666663...4555555555555554322333999************* PP

                 HHHHHHHHHTTT-H..HH CS
        HeLo 166 kelvdsLeeLlpasqqqr 183
                  +++ sL ++lp+s +++
  KKY15326.1 192 NYWNGSLYSILPDSIRES 209
                 ************885544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3583.61
//
Query:       KKY15327.1  [L=455]
Description: putative aldo keto [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-44  151.0   0.0    5.1e-44  150.6   0.0    1.2  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.6   0.0   2.8e-48   5.1e-44       2     290 ..      86     432 ..      85     436 .. 0.87

  Alignments for each domain:
  == domain 1  score: 150.6 bits;  conditional E-value: 2.8e-48
                   EEEE-SSS-ST......TS-HHHHHHHHHHHHHTT--EEE--TT-...TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgsk.....eeiskeealellrraleaGinffDtAevY...gkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresl 90 
                   ++lGt+++g++     +  ++++a +++++ l++G++ +DtA++Y   + g+se llG+  ++    +  v i++Kv   ++  +  ++++n+++s+
    KKY15327.1  86 IILGTATFGDPraaqaKISDPATAKDIVEKLLSYGYTNIDTARAYpvgRGGTSELLLGQLTSS---IKSRVSISSKV---TSFLPGAHRPANLIRSI 176
                   99********9***9777788899999********************999999999*******...***********...***************** PP

                   HHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT.......-HHHHTTHH CS
  Aldo_ket_red  91 eeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynll.......releeegll 176
                   ++sl+ Lg++ vD+l+lH pd+s++ +ee+l+a++e +++Gk   +G+Sn++ e +e +    ++ + v+++++q  yn+l       +   ee ll
    KKY15327.1 177 DASLSALGVSSVDILYLHSPDRSTS-LEETLSAMNEAHEAGKFCRLGLSNYTREEVELVclicEQYNFVRPSVYQGMYNPLcrdveipSGPGEESLL 272
                   *************************.**************************9999998999*******************988777777779**** PP

                   HHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------.......................................TS-HHHHHHHHHHHH CS
  Aldo_ket_red 177 elckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrd.......................................ertsknldaaeelse 234
                   ++++ +g+ + aysp + G++     s++   + ++ +  + +                                       + ts      + ls 
    KKY15327.1 273 DVLRRNGISFHAYSPSAAGFFNLTLPSSSLSSSSHSPSPARPQssthrfdpstplgslyhnqyfhpylfraaskirsiasstSSTSSSSSSSSSLST 369
                   ******************8876433332222222222221111344677888***************************666666666666666666 PP

                   HHHHTT--HHHHHHHHHTTS.....TT-SEEEE--SSHHHHHHHHGGG.G-.---HHHHHHHH CS
  Aldo_ket_red 235 lakehgvslaqlalryalsq.....pavgivipgasnieqlednldal.el.klseeevaeld 290
                     ++  +s   lalr+ + +      ++  v++g+s+++qle+nl+ + e  +l+ee+++e++
    KKY15327.1 370 SKHSSPISAHDLALRWTIFHsaldpTKGDAVVIGVSSLNQLEENLRGVkERgELDEEMLREVE 432
                   66667779999*******99888888********************99556899999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3135.08
//
Query:       KKY15328.1  [L=303]
Description: putative methylated-dna-protein-cysteine methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-23   80.9   0.0    9.2e-23   80.2   0.0    1.4  1  DNA_binding_1    6-O-methylguanine DNA methyltransferase, DNA
  ------ inclusion threshold ------
      0.037   14.1   0.1        5.3    7.2   0.0    2.4  2  MLVIN_C          Murine leukemia virus (MLV) integrase (IN) C
        1.1    9.3   3.4        1.9    8.6   3.4    1.2  1  Peptidase_S49_N  Peptidase family S49 N-terminal


Domain annotation for each model (and alignments):
>> DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   1.5e-26   9.2e-23       2      81 .]     197     281 ..     196     281 .. 0.94

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 1.5e-26
                    HHHHHHHHHTTS-TT-BEEHHHHHHHTT.TSCHHHHHHHHHTSSBTTTSGGGGEEBTTSBCCTTTT.......CHHHHHHHHHHTTS CS
  DNA_binding_1   2 fqqrVwellrqIpyGkvttYgeiAkllgkpkaaraVgqalaanplailvPcHRVvgadgklggyag.......glerkralLeaEgv 81 
                    +++r +++l ++p+G+ ttY++++++l+  ++araVg+ +++np+a+ vPcHRV++a+g++gg+ g       ++++k +lL++Egv
     KKY15328.1 197 YRKRLYSTLLSVPTGRYTTYAAMSDYLK--SSARAVGNGMRNNPFAPEVPCHRVLAASGSIGGFGGdwgkdgkNASKKVDLLRNEGV 281
                    899*************************..**********************************555677777999*********97 PP

>> MLVIN_C  Murine leukemia virus (MLV) integrase (IN) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0   0.00089       5.3      18      52 ..       7      42 ..       2      78 .. 0.75
   2 ?    4.6   0.0    0.0057        34      13      37 ..     187     211 ..     178     227 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00089
                SSS--EEEEEEEEEEEETTEEEETTSSS-.EEGGGE CS
     MLVIN_C 18 kkLePrWkgpyvvllttptalkvdgiasw.vhathv 52
                ++L  +Wk  y+v+l + +  k  +   w vh  h 
  KKY15328.1  7 EELRSQWKTLYTVVLPAKACAKDSSQPNWpVHLDHC 42
                78999***********99999988888887888876 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0057
                 EE--SSSS--EEEEEEEEEEEETTE CS
     MLVIN_C  13 rrhrqkkLePrWkgpyvvllttpta 37 
                 r   +++L+P  k+ y +ll+ pt 
  KKY15328.1 187 RIASKDDLTPYRKRLYSTLLSVPTG 211
                 4456789****************95 PP

>> Peptidase_S49_N  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.4   0.00031       1.9      36     131 ..      91     193 ..      85     195 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00031
  Peptidase_S49_N  36 kekgelevtkLneeykelkeeleealldeeelkaaekkekkeekeekkae.....kkkakeeeekkrvfvldFkGdikA..sevesLreeitav 122
                      ++ g+l+ ++Ln + k++ +++   ++ e+e  + +k++k++   ++ka      kk+++++++++  f  + +Gd +   ++ ++L+e+ + +
       KKY15328.1  91 EDLGQLNEKSLNARGKKRPQQMAGGVILEKESESGAKSKKRTMVPDAKAFdrmtpKKQKSNKQQTSLSFKAKGEGDTQFteHSQDDLKEKHSII 184
                      56789999***************999999999999999988877666665445556666668888888999999998751156789******** PP

  Peptidase_S49_N 123 LsvakpeDe 131
                      L+ + ++D+
       KKY15328.1 185 LQRIASKDD 193
                      *99888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 1895.56
//
Query:       KKY15329.1  [L=290]
Description: putative pqq enzyme repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-16   60.9   0.0    2.8e-08   33.5   0.0    2.2  2  Arylsulfotran_2  Arylsulfotransferase (ASST)
    7.5e-14   51.4   0.0    1.1e-13   50.9   0.0    1.2  1  Arylsulfotrans   Arylsulfotransferase (ASST)


Domain annotation for each model (and alignments):
>> Arylsulfotran_2  Arylsulfotransferase (ASST)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   3.1e-12   2.8e-08      88     181 ..      30     115 ..      20     127 .. 0.88
   2 !   25.3   0.0     1e-09     9e-06     213     298 ..     163     247 ..     148     248 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 3.1e-12
  Arylsulfotran_2  88 e.kdgwvldsliyeidietnevlfrwSalehvdeipleeskaplgdfgrdeskpedyfHlNsvekfedgdyLiSlrelsslflirpkegkvlWq 180
                      e  dg v ++ i  + ++ +evlf+w a +h+d + +      l+         e  + +Nsv    dg+ L Slr++s +++i+ ++gkvlW+
       KKY15329.1  30 EaPDGKVYSDCIKHVNPDSGEVLFQWKAIDHLDPNIFP-----LQPH----YAREHWPLINSVYPLRDGNILASLRSVSAVIIIARDTGKVLWH 114
                      44789999***************************998.....4443....344556779*********************************9 PP

  Arylsulfotran_2 181 l 181
                      l
       KKY15329.1 115 L 115
                      8 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 1e-09
  Arylsulfotran_2 213 vislfnNentdt.nerepttglildvdlqnkevtllrklkdaedeissvsqGsyqllpnghvlveegsigrveeydangkivlearf 298
                       i +f+N    + ++++++ +++++v  ++ke    ++ +     + s   G +q lpng+ l++e   gr++e++ +g i +e+++
       KKY15329.1 163 NILIFDN--GAFrHHESTPFSRVIEVCRATKEILWEYRDWSMPMAFFSAFMGGAQRLPNGNTLITEAVFGRIFEVTLEGDICFEYVN 247
                      5779999..35578899999******9996665555555559*****************************************9986 PP

>> Arylsulfotrans  Arylsulfotransferase (ASST)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   1.2e-17   1.1e-13     120     342 ..      34     230 ..      14     273 .. 0.81

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 1.2e-17
  Arylsulfotrans 120 vktveDtiievd.ktGkvvkewdlakiLdpyrdallkaakapfgdiagvgagrdWlHiNsveydekddsiivSsRhqsavvkidyrtkkvkWilg 213
                      k+ +D i  v+ ++G+v+ +w++ ++Ldp              + +   a   W  iNsv+    d++i++S+R  sav+ i ++t+kv W l 
      KKY15329.1  34 GKVYSDCIKHVNpDSGEVLFQWKAIDHLDPNIF-----------PLQPHYAREHWPLINSVYPLR-DGNILASLRSVSAVIIIARDTGKVLWHLD 116
                     67889*************************977...........3344557889*******8665.***************************99 PP

  Arylsulfotrans 214 dkegwekelqkklLtpvdskGkki..dleegdfdwtwgqHtavlipngstiiellvFDNgdgrskeqpallspkdnySraveYkideknmTveqv 306
                     +    ++  ++ lL+   s  ++    + + + +   +  +  + + g    ++l+FDNg +r++e      +   +Sr++e        T e +
      KKY15329.1 117 STVVAQQHCATELLSS--SVLTPTasPSPSVNGSSVSTSNSDIYCTAG----NILIFDNGAFRHHES-----TP--FSRVIE----VCRATKEIL 194
                     8888888876666666..233333322234444444444445555555....6*************5.....55..999976....56889999* PP

  Arylsulfotrans 307 weygker.GaefYSsivssveylkdkgnilvdsgaag 342
                     wey +     +f+S++++ ++ l++ gn+l++ ++ g
      KKY15329.1 195 WEYRDWSmPMAFFSAFMGGAQRLPN-GNTLITEAVFG 230
                     ***9876589***************.*****999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.51
# Mc/sec: 1704.36
//
Query:       KKY15330.1  [L=632]
Description: putative alpha-ketoglutarate dependent xanthine dioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-22   80.7   0.0    3.6e-22   79.5   0.0    1.5  1  TauD             Taurine catabolism dioxygenase TauD, TfdA fa
    9.3e-08   31.9   0.0      3e-07   30.2   0.0    1.8  2  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    0.00011   22.0   0.0    0.00084   19.1   0.0    2.1  1  MafB19-deam      MafB19-like deaminase


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.0     6e-26   3.6e-22       5     243 ..      23     351 ..      19     352 .. 0.85

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 6e-26
        TauD   5 ltpkfgae..gvdlsdleslddelkeelrellaeygvvvfrg.fplspeqqlefarrfG....plygtpgrgtntkygevld.vssvyesadianlayt 95 
                  + +fga   g+dl+d   ++de+++ l++++  y+v+v++g ++l+p+++ e+  rf+    +++++ + ++  k g+vl+ + +vy  + + n+   
  KKY15330.1  23 QKFNFGAVvsGLDLND---ISDEDVKRLKDIIWIYKVIVVKGqQNLDPKKHWELVTRFDpdapQVHSHGDLKSFNKKGGVLSkSRDVYGIPGAENVRLI 118
                 4566999977888888...99999******************7799************99999889999999999999999965555555555554444 PP

        TauD  96 tll........................................wHtDls.ylesppgiqlLhcleapa...........tG.......GetpfvDgraa 135
                 +++                                        wH D++ y  +p+ ++ L++ + p+           +G       G t+f ++ + 
  KKY15330.1 119 GKGyqglnhyglqnltikglsndfhadklsdeefekgntrfqrWHIDAPlYARDPAWFTTLRACRLPSgpdltikwddgSGlsmksapGLTAFISTSQL 217
                 44466677778888889999999999999999999999****************************777777777775555****************** PP

        TauD 136 ynaLpeelpellegltavrvyyhyrg................gglrteqelpavdkhprtghpvvrthpvltgrkallvn.p.pfatri......eglg 210
                 y  L++e ++l +   +++++++y +                g++ t +e  + d++++++ p+v+++pv tg+ka++v+   +++ ++       +  
  KKY15330.1 218 YGMLSPEEQRLADHSWVEYAPHPYLWiehckanptglglknqGKEHTIEEIGEYDEKDVKRYPMVWVNPV-TGEKAFQVHgIcARKLFLrssldePPEV 315
                 *****************************************999999999999****************8.*********6244444445555544444 PP

        TauD 211 tpeskelldaleelled...peftyrfqwqeGdlvi 243
                  ++ +e+ ++l+ ++ +   pef+      eGd+vi
  KKY15330.1 316 VEDLAEIRAFLHNIQSRilkPEFVALPSIVEGDVVI 351
                 588888888888888778879****99999999998 PP

>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.88   5.3e+03      20      33 ..      21      35 ..      18      42 .. 0.74
   2 !   30.2   0.0   5.1e-11     3e-07       5     101 .]     366     482 ..     363     482 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.88
                     TTTSCSEEEEEEE.T CS
  dCMP_cyt_deam_1 20 kcsnfkVGavivk.n 33
                     k+++f++Gav+   +
       KKY15330.1 21 KEQKFNFGAVVSGlD 35
                     7899******96655 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 5.1e-11
                      HHHHHHHHHHHHHHH.TTTSCSEEEEEEE.T....TEEEEEEESBHHCCTGTTB-HHHHHHHHHHHH.TSSCE................TTEEE CS
  dCMP_cyt_deam_1   5 ekllelalkaakeaq.kcsnfkVGavivk.n....geiistgyngepaggsktiHAEvnAilkaakn.ggskl................egatl 75 
                       ++++ a +a  e   +c+   +G++iv+ +    g  i  g+n+    g++t+H E+ Ai +++++                          +
       KKY15330.1 366 AYWMRRANAALAELVsPCPFGAFGSAIVNhTgdglGDLICIGANSISSTGNPTLHGEIAAINNCTNIlT---DpagpynltaaeaddawSSFSF 456
                      68899999988888889***********964222246799************************98832...1357899*****988888899* PP

                      EEEE--BHHHHHHHHHHT-SEEEEEE CS
  dCMP_cyt_deam_1  76 yvtlePCsmCakaiiqsgikkvvvgt 101
                      y++ e C+mCa ai ++g k+ ++gt
       KKY15330.1 457 YTNAESCPMCAAAIRWAGFKEYIYGT 482
                      *********************99985 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.4e-07   0.00084      36     112 ..     404     489 ..     391     507 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.4e-07
  MafB19-deam  36 iargsnekelnakataHaEi................aalqqAakklkskrlddatlyvtlepCdmCagaivqaglkklvygagnpkslnkLkv 112
                  i +g n  +   ++t H+Ei                + l   a++  ++  +    y+  e C+mCa ai  ag k+ +yg++    +++L  
   KKY15330.1 404 ICIGANSISSTGNPTLHGEIaainnctniltdpagpYNLTA-AEADDAW--SSFSFYTNAESCPMCAAAIRWAGFKEYIYGTS----IERLIA 489
                  66777888888899999999666666655555555544443.3666666..78899**************************9....777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.50
# Mc/sec: 3786.86
//
Query:       KKY15331.1  [L=480]
Description: putative efflux pump antibiotic resistance [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-14   53.4  41.9    2.3e-11   43.2  27.5    2.6  3  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.22   11.6   1.6        1.2    9.3   0.0    2.8  2  DUF2614   Zinc-ribbon containing domain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   2.3   2.3e-08   0.00021       1      63 [.      59     119 ..      59     122 .. 0.95
   2 !   43.2  27.5   2.6e-15   2.3e-11      84     352 ..     121     371 ..     117     372 .. 0.91
   3 ?   -2.2   0.2      0.17   1.5e+03     149     167 ..     434     452 ..     425     462 .. 0.45

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.3e-08
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr 63 
                 l+l++f++al+ +i+++++p +++ +l+ s+s + ++ ++y l+ a++ ++++  sd +G+ +
  KKY15331.1  59 LYLVLFIAALDQTIVATSIP-TISAALH-SASGYVWIGGAYLLANAASCPIWAKCSDIWGPVS 119
                 5799****************.*******.*******************************976 PP

  == domain 2  score: 43.2 bits;  conditional E-value: 2.6e-15
       MFS_1  84 slwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkr 181
                 s+ +l+++r+lqG ++g+l  ++ + i+d+f++    +a+ ++++ + l++ l  llg  +  + + W+++ +i+ +v+  +++  +++l+ e++  k 
  KKY15331.1 121 SMQTLIAARALQGTAGGGLGQLVTITISDLFSE--GLLAVDWFGTLSILAVTLLLLLGLDFGgAIFPWTSPKVICLVVFGTLMI--GFFLFSEQHLAKY 215
                 4448***************************96..88999999999999999999999988889999***************66..6777788877777 PP

       MFS_1 182 kspkeeekgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrllla 280
                 +                 +k+  ++      +++++  +++  g+ ++lply+q+v   s  + +g+l+  +++  a++ +++g l++ ++r r +++a
  KKY15331.1 216 PLMPLS-----------MFKSWSNNA----TFLVAFAHSMVSIGVEYYLPLYFQSVKQAS-PFRSGILILPMMVTEAAVDIIVGILIHQTSRYREITWA 298
                 744333...........589999999....******************************.799998888888888888******************** PP

       MFS_1 281 llllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 ++ l+++  gl++   t+++v+ ++++ +iG  g ++ f + + ++++ +++ ++++a++  ++++sl+++l+
  KKY15331.1 299 GATLMTLGTGLYINFRTNTPVARIVGFEIIGGiGTALLFQAPMIAIQNTVSQANTASATATLGFFRSLATSLS 371
                 *************************99888888************************************9986 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.17
       MFS_1 149 gWravfyilaivsllafvl 167
                 + r +f++ + v+++a+v 
  KKY15331.1 434 SLRNMFIMYTCVAAVAMVA 452
                 2333333333333333331 PP

>> DUF2614  Zinc-ribbon containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00013       1.2      18      88 ..      53     123 ..      44     135 .. 0.86
   2 ?   -0.6   0.4      0.15   1.3e+03      11      63 ..     235     287 ..     226     305 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00013
     DUF2614  18 figlivmyigllfkeselllvlflllGlllvlastvvyfwiGllstkavqvvcpeceketkvlGrvdlcmh 88 
                 ++ l+ +y+ l++ + +  +v   +  + + l s+  y+wiG     a    cp   k + + G v   m+
  KKY15331.1  53 YAILLALYLVLFIAALDQTIVATSIPTISAALHSASGYVWIGGAYLLANAASCPIWAKCSDIWGPVSTSMQ 123
                 5567789999999999999999999999999*********************************9998885 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.15
     DUF2614  11 tfalllvfiglivmyigllfkeselllvlf.lllGlllvlastvvyfwiGllst 63 
                 +fa ++v ig+   y+ l+f++ +        +l l ++++ ++v +++G+l  
  KKY15331.1 235 AFAHSMVSIGVE-YYLPLYFQSVKQASPFRsGILILPMMVTEAAVDIIVGILIH 287
                 677777777764.68888888776554332123334455666677777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3207.68
//
Query:       KKY15332.1  [L=300]
Description: putativelike family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-25   90.1   0.2    1.9e-25   89.8   0.2    1.1  1  NmrA             NmrA-like family
    2.6e-17   63.3   0.0    3.8e-17   62.8   0.0    1.4  1  NAD_binding_10   NAD(P)H-binding
    9.1e-05   22.5   0.3    0.00016   21.7   0.3    1.3  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
    0.00018   21.6   0.3    0.00042   20.4   0.3    1.6  1  DapB_N           Dihydrodipicolinate reductase, N-terminus
    0.00019   21.0   0.1    0.00029   20.4   0.1    1.3  1  Epimerase        NAD dependent epimerase/dehydratase family
    0.00052   20.4   0.3     0.0012   19.3   0.3    1.6  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
     0.0029   18.2   0.3     0.0079   16.8   0.3    1.7  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
       0.01   15.0   0.1      0.015   14.4   0.1    1.2  1  RmlD_sub_bind    RmlD substrate binding domain
       0.01   15.7   0.8      0.017   14.9   0.4    1.5  2  DFP              DNA / pantothenate metabolism flavoprotein
      0.037   14.7   1.1      0.098   13.4   0.9    1.8  2  CoA_binding      CoA binding domain
      0.049   13.6   0.0       0.16   12.0   0.0    1.8  2  Glyco_trans_4_2  Glycosyl transferase 4-like
        0.1   11.9   0.1       0.22   10.9   0.1    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
       0.11   11.5   0.0       0.19   10.7   0.0    1.4  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
       0.11   12.7   0.1       0.23   11.6   0.1    1.6  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
       0.12   11.9   0.0        2.6    7.6   0.1    2.3  2  DUF364           Putative heavy-metal chelation


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.2   1.6e-28   1.9e-25       1     228 [.       7     227 ..       7     262 .. 0.85

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 1.6e-28
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GGS-HHHHHHHHHHHHHHHS-SEEEE CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfyskeiedgkklvdAakeaGvkhfiy 99 
                 +++iGa+G++G  + + l +ag+++ +l R+ ++ +      +Gv++ k + ++ +sl+eal+g d+v s+t+  s+ +  ++ +vdAa +aGvk+fi+
  KKY15332.1   7 VAIIGASGNLGTILLKELQNAGFNITVLSRENSTSTF----PSGVTVKKVNYESTASLKEALQGQDAVVSTTA--SAAVGNQVPIVDAAIAAGVKRFIP 99 
                 79****************************9877665....57******************************..************************ PP

                 EE---GG.GT.SSS---TTTHHHHHHHHH.HHHC....TS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHHHHHHH CS
        NmrA 100 SslgddndrsnaeepavphfdsKaeieey.vral....gipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGafviki 193
                 S++g + +    +   +++   K++  +y ++++    ++ yt v + +f    l++         ++ ++++++   gn +  +  +   iG++v++i
  KKY15332.1 100 SEFGINTRTL-THPGLKTILGGKIKTFDYlIEKSkenpSFTYTGVSSSLFFDWGLKFTGL----GFNKANKTFNVVDSGNESYSVS-SLPFIGRAVASI 192
                 ****999555.3333578899998765552344444448888888888888888886666....4455555899999999666666.9999******** PP

                 HHHHHHHTTEEEEE-SEEE-HHHHHHHHHHHHTS- CS
        NmrA 194 lkdprklkgkriklagntlsgneivelfekkigkt 228
                 l +p+k+ ++++ ++g t + n++++l e++ g++
  KKY15332.1 193 LTHPEKTANQYLLISGFTTTQNQLLKLVEEESGEK 227
                 *******************************9987 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0   3.2e-20   3.8e-17       1     147 [.      11     149 ..      11     196 .. 0.77

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 3.2e-20
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHHHHHHHHHHHHCT--EEEE CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggkdeegaknivdaakeagvkRfvl 95 
                     GA+G+ G  l+kel ++ g+++t+l R+ +  + ++  +g++v +++ +++++l+eal+g+daVvs++++ +      + ivdaa +agvkRf+ 
      KKY15332.1  11 GASGNLGTILLKELQNA-GFNITVLSRENSTST-FP--SGVTVKKVNYESTASLKEALQGQDAVVSTTASAAV--GNQVPIVDAAIAAGVKRFIP 99 
                     9****************.5********999988.86..8*****************************98876..34789**************9 PP

                     EEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHH.....SSSEEEEEEE-CEE CS
  NAD_binding_10  96 vsaigvgdevpgefgewnkellkaylaakraaeellra.....sgldwTivrpggLt 147
                      s +g++ +      ++++  lk++l  k +  ++l +       +++T v+ + + 
      KKY15332.1 100 -SEFGINTR------TLTHPGLKTILGGKIKTFDYLIEkskenPSFTYTGVSSSLFF 149
                     .78888843......233344555555555444444222222245666666655555 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.3   1.3e-07   0.00016      13      86 ..       5      77 ..       2      91 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.3e-07
                  -EEEEES-.SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSSS CS
  Shikimate_DH 13 kkvlliGa.GemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisatase 86
                  k+v +iGa G++++ ++k L ++g++ ++v+ R+ +  +++ + +  +++++ +  +lke+l+  d v+s tas 
    KKY15332.1  5 KNVAIIGAsGNLGTILLKELQNAGFN-ITVLSRENS-TSTFPSGVTVKKVNYESTASLKEALQGQDAVVSTTASA 77
                  799****98****************9.******876.678999999999***********************986 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.3   3.5e-07   0.00042       2      85 ..       6      84 ..       5      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.5e-07
                EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S-BEBSSHHHHHHH-SEEEE-S-HHHHHHHHH CS
      DapB_N  2 kvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklgvavtddleevlekadvliDFTtpeavlenlk 85
                +va++GasG +G+ ++k +++ ++++++    +++     + + + + ++k++++ t++l+e+l+ +d ++  T+ +av + + 
  KKY15332.1  6 NVAIIGASGNLGTILLKELQN-AGFNITVLSRENS----TSTFPSGVTVKKVNYESTASLKEALQGQDAVVSTTASAAVGNQVP 84
                69*****************99.9999987766665....45566668899************************9999988664 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   2.4e-07   0.00029       2      79 ..       8      81 ..       7      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.4e-07
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHH CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaa 79
                 ++Ga+G +G+ l+k+l+++g ++++l+r++s+s + +    ++ ++++   ++l+++++  + dav+   a + v++
  KKY15332.1  8 AIIGASGNLGTILLKELQNAGFNITVLSRENSTSTFPSGV--TVKKVNYESTASLKEALQ--GQDAVVSTTASAAVGN 81
                69*******************9999999998888887765..889***************..99****9988777765 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.3     1e-06    0.0012       1      85 [.       6      85 ..       6      98 .. 0.62

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1e-06
                    EEEEETTTSHHHHHHHHHHHC.TSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHH CS
  Semialdhyde_dh  1 kvaivGatGyvGqellrlLee.hpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivflalpagvskelapk 85
                    +vai+Ga+G+ G+ ll+ L++    ++++v ls+++   +++ + v    ++ +++ ++  +e+l++ d v++ + + +  + +p 
      KKY15332.1  6 NVAIIGASGNLGTILLKELQNaG--FNITV-LSREN-STSTFPSGVT--VKKVNYESTASLKEALQGQDAVVSTTASAAVGNQVPI 85
                    7*******************944..55555.44555.3444444433..2333333333445577888888887776665555544 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.3   6.6e-06    0.0079       2      66 ..       7      71 ..       6      81 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6.6e-06
                   EEEE.TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHH....HHHHHHC-EEECECHHHHHHH-SEEE CS
  F420_oxidored  2 igii.GaGnmgealasgllaagaqpheivvansrnpekae....elaeelgvkvtavdneeaaeeadvvv 66
                   ++ii ++Gn+g  l++ l++ag    +i+v  sr++++ +     + ++++ + ta + +ea++ +d vv
     KKY15332.1  7 VAIIgASGNLGTILLKELQNAG---FNITVL-SRENSTSTfpsgVTVKKVNYESTA-SLKEALQGQDAVV 71
                   89**668***************...999977.555544321111344555566666.8888888888887 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.2e-05     0.015       2      64 ..       6      79 ..       5      89 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.2e-05
                   EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT.............T--TTSHHHHHHHHHHH--SEEEE------H CS
  RmlD_sub_bind  2 kilvtGanGqlGseLakqlaeeglevlaltre.............eldltdaeavaellkeakpdvvvnaAAytav 64
                   ++ ++Ga+G lG+ L k+l+++g++++ l+re             +++ +  ++++e+l+    d+vv++ A  av
     KKY15332.1  6 NVAIIGASGNLGTILLKELQNAGFNITVLSREnststfpsgvtvkKVNYESTASLKEALQG--QDAVVSTTASAAV 79
                   5889*************************99999999999999999999999999999988..6788888887776 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.4   1.5e-05     0.017      27      93 ..      12      77 ..       3      89 .. 0.78
   2 ?   -3.1   0.0       4.8   5.7e+03     137     153 ..     205     221 ..     189     240 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.5e-05
                ---HHHHHHHHHHHHTT-EEEEEE-S-SS--.-TT-..EEEE--SHHHHHHHHHHHHTT-SEEEE---S- CS
         DFP 27 SSGkmGyalAeaaaarGaeVtlvsgpvslet.pegv..evvkvesaeemleaveealkeadivimaAAva 93
                +SG  G  l +++ ++G ++t+ s + s++t p+gv  + v++es+++++ea++     +d+v+++ A a
  KKY15332.1 12 ASGNLGTILLKELQNAGFNITVLSRENSTSTfPSGVtvKKVNYESTASLKEALQG----QDAVVSTTASA 77
                69**********************9987665477762267778888888888765....56666665543 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.8
                 EEEEEEE-SS-HHHHHH CS
         DFP 137 llvGFaaeteellenar 153
                 l+ GF   +++ll+  +
  KKY15332.1 205 LISGFTTTQNQLLKLVE 221
                 45566666655554433 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.9   8.2e-05     0.098       3      88 ..       4      95 ..       2      98 .. 0.76
   2 ?   -2.7   0.0       8.5     1e+04      65      77 ..     190     202 ..     178     222 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.2e-05
                 TEEEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TTTTTCEETTEEE....ESCHHHHHHHC.TTTEEEEES-HHHHHH...HHHHHHHTT-S CS
  CoA_binding  3 dtkviviGagglgiaglyhfkeklkygikavfgvnprkvgtevlglpv....yksvdeleekt.evdvavitvPaesaqe...avdelveagik 88
                  ++v++iGa+g+   g+   ke  + g+++ +   ++ ++t  +g++v    y+s + l+e + + d+ v t+ ++++ +   +vd++++ag+k
   KKY15332.1  4 IKNVAIIGASGN--LGTILLKELQNAGFNITVLSRENSTSTFPSGVTVkkvnYESTASLKEALqGQDAVVSTTASAAVGNqvpIVDAAIAAGVK 95
                 589*********..5556666666667777777788888*****999944444588888888866*******9999987722246888889888 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 8.5
                  EEEEES-HHHHHH CS
  CoA_binding  65 vavitvPaesaqe 77 
                  ++++t P++ a +
   KKY15332.1 190 ASILTHPEKTANQ 202
                  5666666665544 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00013      0.16      16      60 ..      20      62 ..       7      73 .. 0.85
   2 ?   -2.1   0.0         3   3.6e+03      87     101 ..      85      99 ..      78     131 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
  Glyco_trans_4_2 16 lakeLakrgyeVhvitpkkgakdeleaegihvhrlkvdrkgpley 60
                     l keL+++g++++v++++++    ++  g++v++++ ++  +l++
       KKY15332.1 20 LLKELQNAGFNITVLSRENS--TSTFPSGVTVKKVNYESTASLKE 62
                     579*****************..89999********9887775554 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3
  Glyco_trans_4_2  87 gllgslaarlsgvip 101
                      ++ +++aa  +++ip
       KKY15332.1  85 IVDAAIAAGVKRFIP 99 
                      677888888887777 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00018      0.22      37      99 ..       5      74 ..       3      83 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00018
                  SEEEEES-.SHHHHHHHHHHHHTT-EEEEESSSHHHHH.....CHHHHTC.EECSHHHHHHH-SEEEE-S CS
  2-Hacid_dh_C 37 ktvGiiGl.GrIGqavakrlkafgmkviaydrskkkee.....eeeelgv.elvsleellaesDivslhl 99
                  k v+iiG+ G++G+ + k l+  g+++++ +r +++++     +++++++ + +sl+e+l+  D v+ ++
    KKY15332.1  5 KNVAIIGAsGNLGTILLKELQNAGFNITVLSRENSTSTfpsgvTVKKVNYeSTASLKEALQGQDAVVSTT 74
                  6899999769***********************9977788878778888845559******999998765 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00016      0.19       2      81 ..       9      81 ..       8     105 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
   3Beta_HSD  2 vtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvag 81
                ++G++G lG  l keL +++   ++ vl  ++s+++    + ++v+ v ++   ++++l+eal+g d+v+ + +   v +
  KKY15332.1  9 IIGASGNLGTILLKELQNAG--FNITVLSRENSTST----FPSGVT-VKKVNYESTASLKEALQGQDAVVSTTASAAVGN 81
                89**************9999..57888766555555....667777.779999*****************9977766655 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00019      0.23       1      62 [.       6      73 ..       6      95 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00019
                   EEEEE--.SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT......EEE-SSHHHHHHHCSEEEE- CS
  NAD_binding_2  1 kigfiGl.GvMGsnmalnllkagykvavynrtkekveelvaeg......akaaesieelvasldvvitm 62
                   ++++iG  G++G+ + ++l++ag++++v  r+++ + ++ +         + ++s++e++++ d+v+  
     KKY15332.1  6 NVAIIGAsGNLGTILLKELQNAGFNITVLSRENS-TSTFPSGVtvkkvnYESTASLKEALQGQDAVVST 73
                   588999659*********************9954.4444433345555688888888888888888765 PP

>> DUF364  Putative heavy-metal chelation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0022       2.6      10      72 ..       3      76 ..       1      92 [. 0.80
   2 ?    1.8   0.0      0.13   1.6e+02      76     131 ..     123     173 ..     122     182 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0022
      DUF364 10 kgkkVvvVGy...fap.vlkklkekgaeltvlelnpnlleeeegdl.......pdeaaeellpeadvviitGst 72
                + k+V+++G+   ++  +lk+l++ g ++tvl +++++    +g++       + +  +e+l+  d+v+ t ++
  KKY15332.1  3 TIKNVAIIGAsgnLGTiLLKELQNAGFNITVLSRENSTSTFPSGVTvkkvnyeSTASLKEALQGQDAVVSTTAS 76
                56899***99555444799*****************99888887778888888788888999999998887665 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.13
      DUF364  76 gtlerllelakkaaevvlvGPsapllpevlfdyGvdviagvvvtdpdkllraiaeG 131
                 +t+++l+e +k++   + +G s++l     fd G+++ + +  ++++k+++++  G
  KKY15332.1 123 KTFDYLIEKSKENPSFTYTGVSSSLF----FDWGLKFTG-LGFNKANKTFNVVDSG 173
                 799********999999999999864....455555433.3335555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.51
# Mc/sec: 1756.02
//
Query:       KKY15333.1  [L=133]
Description: putative fumarylacetoacetate hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0025   17.9   0.0      0.003   17.6   0.0    1.2  1  Abhydrolase_4  TAP-like protein
  ------ inclusion threshold ------
      0.041   12.3   0.0      0.042   12.3   0.0    1.1  1  DUF3141        Protein of unknown function (DUF3141)
      0.045   13.4   0.0       0.05   13.3   0.0    1.2  1  FSH1           Serine hydrolase (FSH1)
      0.099   12.3   0.0       0.11   12.2   0.0    1.1  1  Abhydrolase_1  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   6.7e-07     0.003      31      92 ..      69     130 ..      38     133 .] 0.85

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 6.7e-07
  Abhydrolase_4  31 akgaapvLllqnerDpaTPyegakklakalggavlvtvegeGHgalaagntCvdkavdaYLl 92 
                     k ++pv ++++ +D + P +    +++  gg + v+v ++GH+++ +  + v+ avda+L+
     KKY15333.1  69 SKIKSPVVFVAGDGDIISPVQRSLDISELVGGPSRVIVVKSGHQMILQDLEGVQGAVDAFLK 130
                    33479***************************888888899*******************97 PP

>> DUF3141  Protein of unknown function (DUF3141)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.3e-06     0.042     280     318 ..      54      93 ..      35     126 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.3e-06
     DUF3141 280 tgelvtsdg.vriDlrnirsPivvfaskgDnitPPqqaln 318
                 t+e+++sd+    +  +i+sP+v  a  gD i+P q++l+
  KKY15333.1  54 TAEVIASDDhIDPEYSKIKSPVVFVAGDGDIISPVQRSLD 93 
                 6677777765777899********************9997 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.1e-05      0.05     152     201 ..      65     112 ..      14     114 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
        FSH1 152 eeyyeedkiqtptLhvlGelDtvvdeerseaLaeafknsskvlkHpggHf 201
                 ++  e +ki+ p+++v G+ D + + +rs +++e +   s+v+  + gH 
  KKY15333.1  65 DP--EYSKIKSPVVFVAGDGDIISPVQRSLDISELVGGPSRVIVVKSGHQ 112
                 33..44899*****************************9*****999996 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.4e-05      0.11     206     255 ..      63     116 ..      25     118 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.4e-05
                    C....THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHH CS
  Abhydrolase_1 206 e....lknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafle 255
                          +++++p+++++g+ D + p + + d+ +l  + ++v+++++gH  +l+
     KKY15333.1  63 HidpeYSKIKSPVVFVAGDGDIISPVQRSLDISELVGGPSRVIVVKSGHQMILQ 116
                    35555567999************************99999*********88877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.48
# Mc/sec: 826.64
//
Query:       KKY15334.1  [L=416]
Description: putative alpha-ketoglutarate dependent xanthine dioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-33  116.7   0.6    2.1e-33  116.3   0.6    1.1  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.6   1.2e-37   2.1e-33       8     267 ..      50     406 ..      40     407 .. 0.87

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 1.2e-37
        TauD   8 kfgae..gvdlsdleslddelkeelrellaeygvvvfrgfpl..speqqlefarrfG......................plygtpgrgtntkygevld. 79 
                 +fga+  g+dl++   l+d+++e + ++l++y+v+vf+ +p   sp +q  +++ f+                       +yg p r++++ +++v++ 
  KKY15334.1  50 DFGADvyGIDLNR---LTDSDFEFVSDALHRYKVLVFKEQPQmlSPHKQYLLTANFDpeettggfahgadpfllshndvNIYGIPSRPAIPVQPQVHIl 145
                 3999999******...77777*******************8889************99999999**********************************7 PP

        TauD  80 ........vssvyesadianlayttll..............................wHtDls.ylesppgiqlLhcleapa...........tG.... 124
                             y+ +          +                              wH D s y+  pp++ +L +++ p+           tG    
  KKY15334.1 146 grggvpekH---YQFPPG--------FkikgidhhdfhlpphitkedrdkgasrfyqWHWDGSlYNIPPPRVGCLLAVRTPKgpdvtvrwddgTGtemk 233
                 766653331...322222........23333444467788899999999************999****************88999999999777799** PP

        TauD 125 ...GetpfvDgraaynaLpeelpellegltavrvyyhyrg................gglrteqelpavdkhprtghpvvrthpvltgrkallvnppfat 204
                    G+t++v g +a++ L++++++ + + +++++++  ++                g ++++++lp+vd++++   p+v+t+p+ tg+k+l+v+ + a+
  KKY15334.1 234 ippGATAYVAGSRALEVLDDDTRQTVMNSKIEYAPHAFKWmstahsarlghileteGLEMPREKLPPVDTRKICTYPMVWTNPK-TGEKSLQVHGQGAR 331
                 *************************************9*********************************************7.*********43334 PP

        TauD 205 ri........eglgtpeskelldaleelled...peftyrfqwqeGdlvifdNrrvlHgrtafdeg.eeRhllrc 267
                 r+        e+    + ke+ ++ +++ ++   pe+ y+++  e d+v++ Nr+++H+ t+f+e    R +++c
  KKY15334.1 332 RLflknrhdgEEKIVNDLKEVRAFMHRIMRPvlsPENIYAHKHDEQDVVLWYNRALWHSITEFPESyGARIMHQC 406
                 43456666555666688888888888888888889****************************555345899998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2726.35
//
Query:       KKY15335.1  [L=318]
Description: putative cmp dcmp deaminase zinc-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1996.54
//
Query:       KKY15336.1  [L=552]
Description: putative ncs1 allantoate transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-92  309.6  33.1    3.8e-92  309.4  33.1    1.0  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.4  33.1   2.1e-96   3.8e-92       1     440 []      37     488 ..      37     488 .. 0.97

  Alignments for each domain:
  == domain 1  score: 309.4 bits;  conditional E-value: 2.1e-96
  Transp_cyt_pur   1 pvpeeeRtwktlnlfsiWlganlnintwvigalglalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvv 95 
                     pvp e+ tw+ l +++ W+++ + ++ w+  a+ l++gL+  +++l+ +++++  ai+++++g++Ga++++pfpi +Ras+G ++s + ++ r++
      KKY15336.1  37 PVPREQQTWTGLAFVMYWFSDLVTVSGWSAPASILTVGLSSTDAILITLCAAICNAIPTVMNGAIGANLHIPFPIAIRASYGYWFSYFCVVSRGI 131
                     8********************************************************************************************** PP

  Transp_cyt_pur  96 iaivwfgvqawiGsealllmlgkifgkwleigg...ailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaeg 187
                     +a+ wfgvq   G+++++ ++ +i+++   +++   ++ g+++ ++++ + + +++++++l + ++++ +f+i+a++vp+ a ++ i++ vka+g
      KKY15336.1 132 LALFWFGVQGAFGADCITPIICSIWPSYAYLPNhlpTSAGITTQGMISYLLYQILQFPFLLIPTERLKYMFMIKAIVVPPTALAMVIYVSVKAGG 226
                     ***************************666666666*********************************************************** PP

  Transp_cyt_pur 188 .Gpvldkavklgkse...lflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakf 278
                      ++++ +++ ++ s+   l l+ +++v +gf+tl++n++DF+r+ak++ ++v+ ql ++p++ +++ ++g++ a a++ +yg++ wsp di++++
      KKY15336.1 227 gSDLFGQPATVHGSKrawLWLANLTSVTGGFSTLAVNISDFSRFAKSPGAQVW-QLPCIPFFKVIVGVFGVVAAGASTKVYGETLWSPIDIINEW 320
                     67788888888877789666788*****************************9.899************************************** PP

  Transp_cyt_pur 279 det....agvllililvalaqlgvnisanllsagldlaallPkkinikrgsliaavia.lvivpwkllssssklftaflsllavflspvagviia 368
                       t    a++++  ++ +laq  vnisan++s+++d+++l+Pk  ni+rg++ a+v++  + +pw   +s+++ f++f+s +a+f+ p+ag+++ 
      KKY15336.1 321 NGTpggrAAMFFCGLVWLLAQFCVNISANSVSFANDVTTLAPKWFNIRRGVILASVLGgWALCPWIIVASADT-FLNFMSGYAIFMAPIAGILMS 414
                     ********************************************************963899***99999999.********************* PP

  Transp_cyt_pur 369 dyfvvrrgylklaalytrrrgsaYwy.rkgvNwravaayivGiaaglvgvagsvg...ikvvkgaeklfdlsylvG 440
                     dy++v+++++ + aly+  + ++Y+y ++g Nwra++ +++ i++ l+g+a++v    +++++g++ l+d ++l G
      KKY15336.1 415 DYWIVKKRDYDVPALYD--PKGIYKYnKFGCNWRALVTTLIVIVPLLPGLASAVSpstVQISEGLKHLYDFNWLYG 488
                     *****************..******************************99999888999*************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 3358.88
//
Query:       KKY15356.1  [L=736]
Description: putative het domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-07   29.5   0.8    6.3e-05   23.4   0.0    3.3  3  HET       Heterokaryon incompatibility protein (HET)


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.065   1.2e+03       1      12 [.     324     335 ..     324     373 .. 0.58
   2 !   23.4   0.0   3.5e-09   6.3e-05      40      81 ..     511     551 ..     500     565 .. 0.84
   3 ?    2.2   0.1     0.012   2.1e+02     125     146 .]     563     584 ..     550     584 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.065
         HET   1 YeaLSYvWgdsk 12 
                 Y a+S+ W d  
  KKY15356.1 324 YIAISHIWRDGL 335
                 99******6654 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 3.5e-09
         HET  40 lgerylWiDaiCInQdddkekskqvqlmadIYsnAelvival 81 
                  +e ++W D +CI  + ++ ++  +++m+dI++nAe v+v  
  KKY15356.1 511 GDEVVIWLDTLCIPLE-KRSRRAAISKMRDIFANAEKVLVLD 551
                 67889**********9.899******************9975 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.012
         HET 125 eeraieellespwfkRvWvlQE 146
                 +e+ + ++  s w++R+W+l E
  KKY15356.1 563 YEENLMRINFSGWMSRGWTLEE 584
                 556666777789*******988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 4900.31
//
Query:       KKY15357.1  [L=1329]
Description: putative dna mismatch repair protein msh4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.2e-126  423.2  33.8   2.1e-126  422.3  33.8    1.4  1  AA_permease      Amino acid permease
    2.7e-64  216.7   0.3      6e-64  215.5   0.1    1.8  2  MutS_V           MutS domain V
    1.7e-31  110.0   1.2    3.2e-31  109.1   1.2    1.5  1  MutS_III         MutS domain III
    5.8e-28   97.9  38.6    1.4e-27   96.6  38.6    1.6  1  AA_permease_2    Amino acid permease
    4.2e-06   27.0   0.0    9.3e-06   25.9   0.0    1.6  1  MutS_IV          MutS family domain IV
  ------ inclusion threshold ------
       0.16   11.5   0.1        1.8    8.1   0.0    2.2  2  AAA_27           AAA domain
        5.6    6.5  20.4       0.53    9.8   5.6    3.2  3  ABC2_membrane_5  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  422.3  33.8  8.2e-130  2.1e-126       1     474 [.      73     557 ..      73     561 .. 0.95

  Alignments for each domain:
  == domain 1  score: 422.3 bits;  conditional E-value: 8.2e-130
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ialgg iGtglf+g+g +l qaGpl++ll+y ++gv i+++m++lge+at  p  g++ ++ +r+++++lGf++G+n ++ ++++l +e+ aas
   KKY15357.1  73 HIQFIALGGTIGTGLFLGIGRALTQAGPLSILLGYTITGVAIYAMMQCLGEMATWLPLPGAIPQFCARYVDDALGFAVGWNNWYASAITLCAEISAAS 170
                  9************************************************************************************************* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeee 195
                  i+iq+w+  ++++   v+++++ +++l++n+++v  ygeaef++a+ikii+i++++i+  i+ +gg +++ + gf++++d+g+ +k ++ +g    ++
   KKY15357.1 171 IVIQYWNGAEHIN-VGVWITIIALLVLALNVFAVSIYGEAEFCFASIKIITIVGLLILALIIDVGGVKSQPRlGFHYWKDPGA-MKTYIAGG----DK 262
                  *************.*********************************************************9***********.66666666....89 PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYv....................lsllligllvprndlgllndsasa. 272
                  g+f++++s +v ++f++ G e+va++agE+++P+k+iPka+++v++ri++fYv                    +s  + g+lvp+nd  ll++ a+  
   KKY15357.1 263 GRFLGWFSTLVNAAFSYGGVEMVAVAAGEAENPRKNIPKAVRRVFWRILFFYVlgslaigefiylpaplrkknISDETKGVLVPYNDSRLLSAQANDa 360
                  9****************************************************777777777777777777777777777777777777777555549 PP

  AA_permease 273 ....aspfvifikesgvsvlaplinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfn 366
                      +sp vi+i+ +g++vl+++inavilt+a ssan++l+++sR l+  a++g aP+++ k++k+gvP+  + +++i+ +l +l  s+ ++  +vf+
   KKY15357.1 361 agaaSSPWVIAINRAGIKVLPDIINAVILTSASSSANAFLFTGSRYLFGIAQNGQAPRFFLKCNKKGVPIYCVGFTAIWMALTYLSCSSGAN--KVFT 456
                  ************************************************************************************99999999..**** PP

  AA_permease 367 fllaisaliglivwlliilsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilv 464
                  ++ ++++++gl++w +i+++y+rf  alk+qg++ ++l fk++++p++++++la++ ii++++++ya+ +       w++ +f+ +y+++++f +++ 
   KKY15357.1 457 WFQNLTTIAGLFTWSSICVAYIRFYAALKAQGIDRNSLVFKSPFQPYLAYSALAFFAIIIVFNGFYAFCP-------WNVDDFLTSYIGIPIFFALFT 547
                  **********************************************************************.......********************* PP

  AA_permease 465 gvklhvknkr 474
                   +k+++k+k+
   KKY15357.1 548 FWKVFKKTKL 557
                  *****99986 PP

>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       5.3   1.4e+04      50      87 ..     822     860 ..     816     863 .. 0.78
   2 !  215.5   0.1   2.4e-67     6e-64       1     187 [.    1016    1202 ..    1016    1203 .. 0.98

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 5.3
                 -------SS-HHHHHHHHHH.HHHTT--TTSEEEEESTS CS
      MutS_V  50 asDdlakgkstFmvEmlEta.silknatekslvilDElG 87 
                 +sD+l++ +s+ +   l++a +  k+a+e+++ +++El 
  KKY15357.1 822 TSDELSQIRSAGVNGFLDVArQTYKEANEDAFALINELN 860
                 578888888888888888873578999999999999986 PP

  == domain 2  score: 215.5 bits;  conditional E-value: 2.4e-67
                  EEEE-STTSSHHHHHHHHHHHHHHHHHT--BSSSEEEEE--SEEEEEE--------SS-HHHHHHHHHHHHHTT--TTSEEEEESTS-SS-HHHHHH CS
      MutS_V    1 llitGpnmaGkstylrqvalivllaqiGsfvpaekaeisivdkiftRvgasDdlakgkstFmvEmlEtasilknatekslvilDElGRGtstydGla 97  
                  ++itG+nm+Gksty+r++al++++aqiG+fvpa++a+++i+ +if+Rv+++D+++++ stF  Em E++ il+n+  +slv++DElGRGtst dGla
  KKY15357.1 1016 QIITGCNMSGKSTYIRSIALMTIMAQIGCFVPAQYASFPITHQIFARVSTDDNVESNVSTFSSEMREMSFILSNIEPRSLVLVDELGRGTSTSDGLA 1112
                  59*********************************************************************************************** PP

                  HHHHHHHHHHHTT--EEEEEES-GGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEES--S.S--HHHHHHHTT--HHHHHHHHHHHHHT CS
      MutS_V   98 ialavaeyllekikaktlfatHyheltklaekleevknlhlavkeeeedivflykvkegaae.ksyGikvaklaglPesvverArevlkel 187 
                  ia a+ae l++   a + f tH+ el ++  +   v nlhl+v+ e +++++lyk+++g  e k yG+++ak+  +P +v+++A+ev k+l
  KKY15357.1 1113 IAIAIAEALMS-SGALVWFVTHFRELPRILGERVGVVNLHLSVEMEPDRMKMLYKISDGPEEqKLYGLAMAKVMDFPPDVISKAEEVSKAL 1202
                  **********9.79*********************************************987377*********************99887 PP

>> MutS_III  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   1.2   1.2e-34   3.2e-31       1     191 []     695     966 ..     695     966 .. 0.72

  Alignments for each domain:
  == domain 1  score: 109.1 bits;  conditional E-value: 1.2e-34
                 HHHHHTTSSS-TTS.SSSS-HHHHH---SSHHHHHHHHHHHH--BS-HHHHHHHHHHHHH.T..TT.HHHHHHHHTT---HHHHHHHHHTT........ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........ RF
    MutS_III   1 aTlrnLeilenlrggskegsLlgvldrTvTamGaRlLrewllqPltdleeInaRldaVee.leneelreelrellrrlpDleRllsrislg........ 90 
                 +T+ +Le+++nl++ +++++Llg+l++T T+mG+R L++++lqP+td+++++aR+daVee  ++e+  +e+r++l+ + D++R+l ++ l         
  KKY15357.1 695 STIASLELIQNLQNTKSKHCLLGLLKETLTPMGTRVLKSNILQPSTDKKKLQARYDAVEElTSKEHSFHEIRDALKGFVDTDRVLGQLVLLptktsfqh 793
                 69*********77778899*****************************************777889999****************86666322111111 PP

                 .---HHH...HHHHHHHHHHHHTTTTT---SSTHHHHHHHHHHHHHHHB-SS--SSGGGS--B-T.................................. CS
                 .xxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................. RF
    MutS_III  91 .kakard...lkallealkaleelvallekeklaeseeeslaelleeaideeplalekegedlra.................................. 151
                  +++ ++   lk++++ +k l +  +   +++l         + +++a ++  l+  +++ ++++                                  
  KKY15357.1 794 vEQCINNvvqLKSFVDGIKPLWQALTSVTSDEL---------SQIRSAGVNGFLDVARQTYKEANedafalinelnvgehdltldlkyeparsyyvrip 883
                 122222222244455555533222222211111.........222222232222222222222223344444555555557778888888888999999 PP

                 ...........................................HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH CS
                 ...........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III 152 ...........................................iealeqelfqelleeveealerlrrlaealaeLDvllSlA 191
                                                               + ++ +qe+++++++++  l++++e++a LD+l+++A
  KKY15357.1 884 ctslegrrlpaifinvfrkrayiecqtldlmkinqrivdahneVIHMSDATVQEVIQQIRSQITPLYKISESIALLDMLVAFA 966
                 9999999999999999999999999999999999999988865555559999*******999********************9 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6  38.6   5.6e-31   1.4e-27       8     404 ..      76     522 ..      70     546 .. 0.78

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 5.6e-31
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaas 101
                    ++++g +ig+g f     +++ +gp++il + +++++ ++a++ ++ E+++ lp  g i  + ++     ++f ++w nw+a +++l++ +s+a  
     KKY15357.1  76 FIALGGTIGTGLFLGIgrALTQAGPLSILLGYTITGVAIYAMMQCLGEMATWLPLPGAIPQFCARYVDDALGFAVGWNNWYASAITLCAEISAASI 171
                    899**********998966667****9999999999999************************************************999988888 PP

  AA_permease_2 102 yllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.........stetdtffpngwp 188
                     ++++ g     + + + + + +i +lv ++n++++++++ + ++ + +ki ++++ l+il+li+  gg  s++         +++ +t  ++g +
     KKY15357.1 172 VIQYWNGA----EHINVGVWITIIALLVLALNVFAVSIYGEAEFCFASIKI-ITIVGLLILALIIDVGGVKSQPrlgfhywkdPGAMKTYIAGGDK 262
                    88886542....344455556677788889*********************.67776766777776666666664566655554444455555555 PP

  AA_permease_2 189 g.v...llgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyll..............................vniaflgvvpdd 248
                    g +   +++l  +++s++G+e++a+ + e+++  k++pka   ++  +l++y+l                              +n + l   + +
     KKY15357.1 263 GrFlgwFSTLVNAAFSYGGVEMVAVAAGEAENprKNIPKAVRRVFWRILFFYVLgslaigefiylpaplrkknisdetkgvlvpYNDSRLLSAQAN 358
                    533566778888*****************7776589******************776666666666666666666666555555333333333333 PP

  AA_permease_2 249 eianlsnlgsvaalffeavggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllass 344
                      a  ++  s++ +  +++g kv+  i++++i  s+  ++n+++++ sr+l+ +a+ g  Prff k nk+g pi+++ +tai   + +l ++ + +
     KKY15357.1 359 DAAGAAS--SPWVIAINRAGIKVLPDIINAVILTSASSSANAFLFTGSRYLFGIAQNGQAPRFFLKCNKKGVPIYCVGFTAIWMALTYLSCSSGAN 452
                    3333333..3499**********************************************************************8777666654449 PP

  AA_permease_2 345 aaynfllsvsslgliisyllliigalilrkkrphl..kr........pgkilvaiigalfllfllvalff 404
                    + +++  ++++++ ++ +  + ++++  +   + +   r        +  +l +   a+f++++++++f+
     KKY15357.1 453 KVFTWFQNLTTIAGLFTWSSICVAYIRFYAALKAQgiDRnslvfkspFQPYLAYSALAFFAIIIVFNGFY 522
                    9999888888888888888888888877766665544345666445432355555556666666666554 PP

>> MutS_IV  MutS family domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   3.6e-09   9.3e-06       1      92 []     833     926 ..     833     926 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 3.6e-09
                 TTSHHHHHHHHHHHHHHHHHHHHHCCCCC.CCT-TTBEECCCSSSEEEEEE-TCC..CTTT--SEEEEEECTCEEEEECCCHHHHHHHHHHHHHH CS
     MutS_IV   1 gfdeeLdelrdrleelekeleeleekere.klgikslkveynkvlGyylevtrse..akkvpkefirlqtlknseryttaelkkleaelleaeee 92 
                 g++  Ld +r++++e++++ ++l  ++   ++++ +l+++y +++ yy++++ +     ++p+ fi++  +  ++++ t +l k+++++ +a+ e
  KKY15357.1 833 GVNGFLDVARQTYKEANEDAFALINELNVgEHDL-TLDLKYEPARSYYVRIPCTSleGRRLPAIFINVFRKRAYIECQTLDLMKINQRIVDAHNE 926
                 67899**********************9988999.*****************987546788******************************9975 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0007       1.8      24      47 ..    1011    1034 ..    1006    1038 .. 0.88
   2 ?    0.3   0.2      0.17   4.4e+02      71     128 ..    1205    1266 ..    1198    1273 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0007
      AAA_27   24 eeadlhliyGpNEAGKstalrAis 47  
                   ++++++i G N +GKst +r+i 
  KKY15357.1 1011 PQSRFQIITGCNMSGKSTYIRSIA 1034
                  5789***************99985 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.17
      AAA_27   71 gavleeadgeelefaRrkgr....kktlldaddqalpeevlaallggldretFealFgLdhe 128 
                  ++ ++ +d++++++aRr++     +++l++a+d al  + ++ +l  l+ e+  ++ g+d+e
  KKY15357.1 1205 KGKMRLQDKTAIALARRRKLvlnlREQLIQARDGALRGAEMKIWLTKLQDEFAVRMAGIDAE 1266
                  67788889999999999875222267888999999*************99999999999987 PP

>> ABC2_membrane_5  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   5.6   0.00021      0.53     119     192 ..     155     230 ..     140     234 .. 0.63
   2 ?   -2.6   0.0       1.3   3.3e+03     171     198 ..     420     447 ..     396     456 .. 0.72
   3 ?    3.5   3.9     0.018        46     104     170 ..     486     557 ..     458     569 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00021
  ABC2_membrane_5 119 siliglvialiflaivlPlyfkfgvekgrivliiiifgiifllvaifslskl.....elslidlsnyilliillviill 192
                      +++ ++ +   ++a +++++++ g+e++++ + i i+++ +l  ++f +s +      ++ i++   i +++ll+++l+
       KKY15357.1 155 WYASAITLCAEISAASIVIQYWNGAEHINVGVWITIIALLVLALNVFAVSIYgeaefCFASIKI---ITIVGLLILALI 230
                      4566777777889*****************6666666666666666665555311003333333...333333333322 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.3
  ABC2_membrane_5 171 elslidlsnyilliillviillliivSy 198
                       l+ ++   +i ++++++i ++l+++S+
       KKY15357.1 420 FLKCNKKGVPIYCVGFTAIWMALTYLSC 447
                      4555666667888888888888888887 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.018
  ABC2_membrane_5 104 avlikgn.vtisevllsiliglvialiflaivlPlyfkfgvekgr.i...vliiiifgiifllvaifslskl 170
                      a+ i +n + +++ +  +l++ ++a+++++iv+  ++ f  +++  +   ++ i if++ f + ++f++ kl
       KKY15357.1 486 AQGIDRNsLVFKSPFQPYLAYSALAFFAIIIVFNGFYAFCPWNVDdFltsYIGIPIFFALFTFWKVFKKTKL 557
                      333555577789999999*************************99654444555555555666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       929  (0.0518155); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.49
# Mc/sec: 8119.28
//
Query:       KKY15358.1  [L=1920]
Description: putative glycogen debranching enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.9e-175  584.2   0.0   2.6e-175  583.8   0.0    1.2  1  hDGE_amylase   Glycogen debranching enzyme, glucanotransferas
   2.1e-122  408.7   0.0   3.7e-122  408.0   0.0    1.3  1  GDE_C          Amylo-alpha-1,6-glucosidase
   8.3e-101  336.5   0.0   3.8e-100  334.3   0.0    1.9  2  DAHP_synth_1   DAHP synthetase I family
    7.3e-88  294.5   0.0    1.4e-87  293.6   0.0    1.5  1  hGDE_central   Central domain of human glycogen debranching e
    9.1e-28   96.2   0.0    1.9e-27   95.2   0.0    1.6  1  hGDE_N         N-terminal domain from the human glycogen debr
  ------ inclusion threshold ------
      0.017   14.7   0.0       0.04   13.5   0.0    1.5  1  Alpha-amylase  Alpha amylase, catalytic domain
       0.17   12.3   0.0       0.75   10.2   0.0    2.1  2  YCII           YCII-related domain


Domain annotation for each model (and alignments):
>> hDGE_amylase  Glycogen debranching enzyme, glucanotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  583.8   0.0    1e-178  2.6e-175       2     439 ..     150     590 ..     149     591 .. 0.97

  Alignments for each domain:
  == domain 1  score: 583.8 bits;  conditional E-value: 1e-178
                   EE-TTS-EEEEE-GGGS-.SHHHHHHHHHHHHHTT--EEEES--EEE-TT--TTSEEEEEEE-TTT-.....SSC.HHHHHHHHHHHHHH--EEEEE CS
  hDGE_amylase   2 elpldslsiqtvlskllG.pleeWekvlkeikekgYnmiHftPlqelGesnSpYSiadqleldkelfeekdkeekeedveklvkklekeygllsltD 97 
                   +lp+d+lsi++v+sk++G ++++ e++lk i +kgYnm+HftPl+++GesnSpYSi+dql++d+e f     +++e+d++++vk++e+++gll ltD
    KKY15358.1 150 TLPVDALSIFSVISKFMGqYPKDFENHLKGIGQKGYNMVHFTPLMQRGESNSPYSIFDQLSWDPESF-----PNGEDDIKDMVKNMEDKHGLLGLTD 241
                   69****************889**********************************************.....999********************** PP

                   E--SEEETT-CCCCC-GGGS--TTT-GGGHHHHHHHCCCCTCCCHCCTSSS-SS---HCHHHHHHHHHHHHTCGGCTTGTTTS--CHHHHHHHHHST CS
  hDGE_amylase  98 vVlnHtannskwleehPeagYnletaPhLepAleLdkallefskeleklglpteikseedlekvmealkeevleklklweyyvvdvekeveelkeal 194
                   vV+nHtanns wl+ehPeagYn+etaP+Le+Al+Ld+allef+++le+lglp+++ks edl+k++ a+ke+vl+k+klwe+y+v+v+++ +++ ea+
    KKY15358.1 242 VVWNHTANNSGWLQEHPEAGYNVETAPWLESALQLDTALLEFGDKLEELGLPNDLKSVEDLNKLIGAMKEHVLRKIKLWEFYAVNVNRDSKAVLEAY 338
                   ************************************************************************************************* PP

                   TSS----S........S---..-TT.SHHHHHHHHHHHS-SSTTS--STT---B-HHHHHHHHHHHT-SS.TTT....THHHHHHHHHHHHHHHHHH CS
  hDGE_amylase 195 eesekkek........lelkeelkeaslkeeaklvkekalkeakkllerfsakidlevaaallkalleeekkeeeeeeevaeklkkildelNlelyk 283
                   ++ + k +        +   + ++++sl e+a ++k++ + +  ++ +r+s+++d++v aal++a++++ ++ e++ ++v++++++il+elNl++y+
    KKY15358.1 339 TSGNVKIPkggfgdagVGGLDVVRAWSLYEKALFLKNHGMLNGLRVDGRWSRQVDPTVGAALITAVHGRYEA-EKDISSVESTIESILNELNLPFYR 434
                   9997766679***9997778899999*************99**************************66655.669********************* PP

                   HHHHHHHHHHHHHHHHHHHHCS-SSS-------SSS-SS--SEEEE......E-TTSSEEEEEEEEE-TT--TTS-TTSTT--TTTTT--EEECCEE CS
  hDGE_amylase 284 eldedvkaileqllnrikYerldekgPklgeitkkeplverYFtrlekeestkekdkkklalannGWvwgadplkdfaskeskaYLrRevivWgDcv 380
                   e+dedv+ail+q+ +rikY+rld++gPk+g+itk++pl+e+YFtrl+ +e+tk++++k+lal+nnGW+w+ad++kd+a+++ + YLrRevivW Dcv
    KKY15358.1 435 EYDEDVAAILDQISGRIKYLRLDAHGPKQGPITKDKPLIETYFTRLPFNETTKKHNPKSLALVNNGWIWAADAMKDNAGPDWRPYLRREVIVWADCV 531
                   ************************************************************************************************* PP

                   EB---SSGGGSHHHHHHHHHHHHHHHCCSSEEEETTGGGS-HHHHHHHHHHHHHH-TT- CS
  hDGE_amylase 381 KLrYGkkpedspfLWehmteYtellAkifeglRiDNcHStPlhvaeylLdeaRkvrpdl 439
                   KLrYGk ped+p+LW++m++Yt+l+Ak+f+g+RiDNcHStPlhvaeylLdeaR vrp+l
    KKY15358.1 532 KLRYGKGPEDNPWLWDFMAKYTRLMAKYFAGFRIDNCHSTPLHVAEYLLDEARLVRPNL 590
                   **********************************************************9 PP

>> GDE_C  Amylo-alpha-1,6-glucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  408.0   0.0  1.4e-125  3.7e-122       3     382 ..    1078    1547 ..    1076    1548 .. 0.95

  Alignments for each domain:
  == domain 1  score: 408.0 bits;  conditional E-value: 1.4e-125
       GDE_C    3 sdqflvrrkseslkeeekgvsliAGlpwFs....d.WGRDtfIaLsGllLvtgrfeeAreilltFaktlrhGliPNlldegqealyntvdaslwlie 94  
                  s+q  ++ ks+sl +++ ++sl+AGlp+F+    + WGRD+fI+L+Gl L tgrf+eA+e++++F++ l+hG+iPNll++g  ++yn++d ++++++
  KKY15358.1 1078 SVQQTGYVKSASLWPTKSVPSLAAGLPHFAvswaRcWGRDVFISLRGLFLCTGRFDEAKEHIIAFGSVLKHGMIPNLLSSGAAPRYNSRDSPWFFLQ 1174
                  6677788899999********************978************************************************************* PP

       GDE_C   95 aiekYleyagd.aeilrriyp...........................vlqeilqkyvqGtky....................kigldeedglisag 143 
                   i++Y++++++ ++il+   p                           ++ eilq+++ G+++                     +++d+++g+i++g
  KKY15358.1 1175 NIQDYTKIVPNgMDILQAEVPrrflpyddtwfphddprayskistvqeIIIEILQRHASGLSFrehnagpsldmqmkpegfqiDVHVDWNTGIIFGG 1271
                  ****************6665566666**********************99*********************************************** PP

       GDE_C  144 erlnqlTWmD.......akvkgepvtPRdGkaveinaLwyaaLkileelaekalge........akkssykelaekikesfekkFwdeaa....... 218 
                  +++n++TWmD       a++kg p tPRdG+avei +L+y+aLk+++el++    +         +k +++e+ae+ik+sfek +w +++       
  KKY15358.1 1272 SQYNCGTWMDkmgeserAGSKGVPGTPRDGAAVEITGLAYSALKWADELSKAGNLKqngvntdkGNKITFAEWAERIKASFEKCYWVPKDpkedsaf 1368
                  **************************************************9766557999999999*******************99888899999* PP

       GDE_C  219 ....aavakreilaDvlkssee.kdlslRpNflialslapellseekakkvlekaeeeLltplGlktLdpedpeYkgnYdgsedsrdaa......YH 304 
                      +++++r+i++D++ks ++ +d++lR Nf ia+++ap+l+++e+a ++l+ a++ +++p G+ tLdp+d++Y+++Y++seds+d+a      YH
  KKY15358.1 1369 didaQLINRRGIYKDLYKSGKPyEDYQLRANFPIAMTVAPDLFTPERALEALSVADKVIRGPTGMATLDPSDQNYRPYYNNSEDSDDFAtskgrnYH 1465
                  ***99******************************************************************************************** PP

       GDE_C  305 qGtvWvwllgsyveallkfgeklgkskea....leevkalLeglekhleeaglgslsElfdgdaellpkgciaQAWSvaell 382 
                  qG++W+w+ g++++allkf  k  ++ e+    +++++ +L+g ++ ++++++++l+El+++++e++++++++QAW +a ++
  KKY15358.1 1466 QGPEWLWPTGFFLRALLKFDLKRRTTAEErlesYQQITRRLAGCKQAIHDSPWKGLTELTQKNGEYCADSSPTQAWWIAFFI 1547
                  ******************9877544444356679******************************************999776 PP

>> DAHP_synth_1  DAHP synthetase I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.23   5.8e+02     200     216 ..     683     699 ..     662     717 .. 0.79
   2 !  334.3   0.0  1.5e-103  3.8e-100       3     274 ..    1591    1896 ..    1587    1897 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.23
                   -EEEESCHHHTTCGGGG CS
  DAHP_synth_1 200 pvmvDvsHansrkdykr 216
                    +++D++H+n ++  kr
    KKY15358.1 683 ALFMDCTHDNEMPAQKR 699
                   799*******9998554 PP

  == domain 2  score: 334.3 bits;  conditional E-value: 1.5e-103
                    EEECHHHHCCCTTT..CSEEEEEEESC-S-HHHHHHHHHHHHHHHHHHTTTEEEEEESSSC-S.SSTTS-SHTTHHHTHHHHHHHHHHH...... CS
  DAHP_synth_1    3 pisakaadiliGkd..drllviaGPCsiedpeaaleyAerlkklgeklkddleiimrayfeKpRrstvgfkGlindpdlkilsrikkel...... 89  
                    +++++aa +++G d  +rllv++GPCsi+dp aaley++rl kl+e +kddl i+mr+y+eKp r+tvg+kGlindpd++++++i+k+l      
    KKY15358.1 1591 KARNEAAAVVAGSDtnERLLVVIGPCSIHDPAAALEYCDRLLKLKELYKDDLLIVMRSYLEKP-RTTVGWKGLINDPDIDNSFQINKGLrtsrql 1684
                    667778999999874469*********************************************.9****************************** PP

                    .......T-EEEEEESSCCTHHHHHHHESEEEE-CTCTTBHHHHHHHHTTSSEEEEEE-TT....HHHHHHHHHHHHHHHTTE.........EE- CS
  DAHP_synth_1   90 .......glpiatevldpisvqyladvvdiiqiGArttesqdllelasglskpvglKngtd....vaidemkaaaekilflgv.........etk 164 
                           g+pia+e+ld+is+q+lad+++++++GArttesq ++elasgls+pvg+Kngtd    vaid++ a++++++fl+v          t 
    KKY15358.1 1685 fvdltskGMPIASEMLDTISPQFLADLLSVGAVGARTTESQLHRELASGLSFPVGFKNGTDgslgVAIDAIGAVRHPHHFLSVtkpgvvaivGTV 1779
                    *********************************************************************************************** PP

                    -EEEEEEEEEEST.SSSSSCHCHHHHHHHHHHCTSS.-EEEESCHHHTTCGGGGHHHHHHHHHHHHHTT...ESEEEEEBBSSCCC-SST..GGG CS
  DAHP_synth_1  165 giilcerglrggk.ktnrdvedvaavkilkeetgkl.pvmvDvsHansrkdykrqkkvlklakaaiaaG...iaGvmiEshlnpgkalsd..gkq 252 
                    g+++c+++lrgg+ +tn+d ++++++ ++++ +g   ++mvD+sH+ns k++k+q+kv+++ +++i +G   i GvmiEsh+++g ++++  gk 
    KKY15358.1 1780 GNEDCFVILRGGTkGTNYDEKSIKEAREALRSKGIKeRLMVDCSHGNSLKNHKNQPKVAAVLAEQIEKGetaIMGVMIESHIHEGAQKIPpeGKA 1874
                    *************9************99998886447****************************************************999*** PP

                    GBBCTCBHHHHHHHHHHHHHHH CS
  DAHP_synth_1  253 alkygksetdacilkeltelll 274 
                     lkyg+s+tdaci++e+te++l
    KKY15358.1 1875 GLKYGVSITDACIGWEDTEEVL 1896
                    ******************9886 PP

>> hGDE_central  Central domain of human glycogen debranching enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.6   0.0   5.4e-91   1.4e-87       1     253 []     759    1003 ..     759    1003 .. 0.96

  Alignments for each domain:
  == domain 1  score: 293.6 bits;  conditional E-value: 5.4e-91
                    TTHHHHHHHHHHHHHHHTT--SEEEEEE.ETTEEEEEEEETTTSEEEEEEEE--S..S--.-.------EEECTEEEEEEEEEEEEE-S.....- CS
  hGDE_central    1 GIikakklLnklhkelakegfdevhvdqleediitvtRvnpkthesvvliartaFskpksskeekklkpiklsgtikevlleaslevksk...ke 92  
                    GI+ +kklLn++h+ ++k g+de+h+++ e++ itv+Rv+p+++++++lia+taF  p+++++++ l+p++l+gt++++l ++ lev+++   k+
    KKY15358.1  759 GIAGVKKLLNHIHTLMGKGGYDETHIHH-EGENITVHRVHPESRKGYFLIAHTAF--PGYGNGNGGLNPVHLTGTKAKLLGSWMLEVDASeeaKT 850 
                    9***************************.**************************..8889999************************9888878 PP

                    .----SSEE----EEEE.E----EEEE.......ETTTEEEEE--.S---SSEEEEEEEEETT--ST..HHHHHCSSHHHHCTT--TTHHHHHH- CS
  hGDE_central   93 eykkdekfinGlpsklkeelkleevkvlkieevedeeeesvievefenfppGsvvvfetelsevdek..ldefakselkealsklslvdlnvvLy 185 
                    ++ kd+k+++Glps+ k +l+  ++ +        e+ ++vi+++ ++fppGs+++fet++++++++  + +f+ s+++ea+++l+l+dln+vLy
    KKY15358.1  851 TALKDPKYLQGLPSRTK-DLQGINIVS--------EGGDTVISIP-DKFPPGSIALFETWIPGAEHSdvQGKFIVSGANEAFRDLDLIDLNFVLY 935 
                    899**************.887777777........34689*****.******************98887888*********************** PP

                    -BHHHHHHHCTTS--S--BTTTB--SCSSHHHHHHHHHHHHHCT-TTSHHHHHHHH-SHHHHHHHHHG CS
  hGDE_central  186 rceeEErdaskgkdgvYdvpnygklvYaGlqGvvsvlkeiiksndlghplcenLReGdWlldYivnRL 253 
                    rc++EErd+s+g+dgvY++p++g+lvYaGlqG++svl++i+k+ndl+hplc++LR+G+W+ldY+v R+
    KKY15358.1  936 RCDAEERDTSAGRDGVYNIPGHGPLVYAGLQGWWSVLENIVKYNDLAHPLCNHLRDGQWALDYVVGRI 1003
                    ******************************************************************96 PP

>> hGDE_N  N-terminal domain from the human glycogen debranching enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   0.0   7.3e-31   1.9e-27       1      89 [.      51     146 ..      51     147 .. 0.93

  Alignments for each domain:
  == domain 1  score: 95.2 bits;  conditional E-value: 7.3e-31
                 EEEEE-TT-GGGTT-EEEE-S-SSSS---TT--EEEE----SSS-EEEEEEE-S-CEEEEEEEEE-TTSS.........EEE---EEEEE---EES CS
      hGDE_N   1 lrfviegasligrkgslwtNyPeegkeFeRdkfrelklkssfekdiyidipitkaGaFafyftydeeeele.......ekktkgsgYfnVePrLtv 89 
                 lr++ieg+s+i+r+gs+w+N P+ g++FeR+kfre+kl+++f+++i+idipi  aGaFafy+ty+++++ +       e+  ++ +Y++VePr+++
  KKY15358.1  51 LRIAIEGTSSICREGSFWINSPAPGERFERTKFREYKLEPDFNRTIEIDIPIVCAGAFAFYTTYTPLPDFStasvktpEATRTEIHYVDVEPRINL 146
                 799******************************************************************999999875455555*********987 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.6e-05      0.04      16      90 ..     183     260 ..     174     321 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-05
                    CT-SCEEE-B-CE-S-TTTTSS-SCECCE-CC.C--.CCCCCCHHHHHHCT.T-EEEEEE--SC--TTSCCCHCCHHS CS
  Alpha-amylase  16 LGvtaiwlsPifkspqadhgYdiadytkidpe.fGt.nedlkeLiskahek.gikvilDlVvNHtsdehewfkeslkk 90 
                     G + +  +P ++  +++  Y i d  + dpe f +  +d+k +++++ +k g+  ++D+V NHt++++ w +e+ + 
     KKY15358.1 183 KGYNMVHFTPLMQRGESNSPYSIFDQLSWDPEsFPNgEDDIKDMVKNMEDKhGLLGLTDVVWNHTANNSGWLQEHPEA 260
                    4677899999999999999999999999998646542689*******986549999***************9998764 PP

>> YCII  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00029      0.75      51      85 ..     828     862 ..     792     866 .. 0.85
   2 ?   -3.7   0.0       6.6   1.7e+04      25      45 ..    1314    1334 ..    1310    1343 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00029
                 SCGGCEEEEEEEEEESSHHHHHHHHHT-HHHHTTE CS
        YCII  51 aetkeqlgGfyiveaadldeaieiaardPfveaGl 85 
                 ++tk  l+G +++e++  +ea++ a +dP + +Gl
  KKY15358.1 828 TGTKAKLLGSWMLEVDASEEAKTTALKDPKYLQGL 862
                 679999***********************998886 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 6.6
                  HHHHHHHHHTTGEEEEEEEEC CS
        YCII   25 layleelkkeGvllaaGpklv 45  
                  l++ +el k+G l   G +++
  KKY15358.1 1314 LKWADELSKAGNLKQNGVNTD 1334
                  79999*****99987766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1920 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.50
# Mc/sec: 11474.98
//
Query:       KKY15359.1  [L=247]
Description: putative cytochrome c1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-93  311.3   0.0    4.2e-93  311.1   0.0    1.0  1  Cytochrom_C1     Cytochrome C1 family
     0.0036   17.6   0.0     0.0072   16.6   0.0    1.6  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
  ------ inclusion threshold ------
       0.05   14.8   0.1       0.25   12.5   0.1    2.2  2  Cytochrom_C      Cytochrome c


Domain annotation for each model (and alignments):
>> Cytochrom_C1  Cytochrome C1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.1   0.0   7.1e-97   4.2e-93       1     218 [.      15     233 ..      15     234 .. 0.99

  Alignments for each domain:
  == domain 1  score: 311.1 bits;  conditional E-value: 7.1e-97
  Cytochrom_C1   1 wsfegifgkfDkaqlqRGlqvykevcsaCHslklvafrnLaelglteeevkalaaeyevkdgpddegemfeRpgkpaDklpspyaneeaaraangga 97 
                   w+++++++++D+++l+RG+qvy+evc++CHsl++v +r+L++++ t +e+ka+a+e+e++++p+dege ++Rpgk++D+l  py+n+eaaraan+ga
    KKY15359.1  15 WEHTKWTKTYDHQALRRGFQVYREVCASCHSLNRVPYRSLVGVMATVDEMKAMAEENEYDTEPNDEGEIEKRPGKLSDYLLPPYKNDEAARAANNGA 111
                   99*********************************************************************************************** PP

  Cytochrom_C1  98 lppDLsllvkArkggadYiyslLtgY.eeppagvevkegqyyNkyfpggviamakpLsdgqveyedgtpatveqmakDvtaFLaWaaepklearkkl 193
                   lppDLsl++kAr+gg +Yi++lLtgY eeppag++v++g+++N+yfpg+ iama++L dg veyedgtpat++qmakDv++FL+Waaep++++rk +
    KKY15359.1 112 LPPDLSLIIKARHGGCNYIFNLLTGYpEEPPAGATVQSGLNFNPYFPGTGIAMARVLYDGLVEYEDGTPATTSQMAKDVVEFLNWAAEPEMDTRKLM 208
                   **************************777999***************************************************************** PP

  Cytochrom_C1 194 glkvilfllilavllylvkrkiwak 218
                   g+kv+++ ++l +l+++vkr +wa 
    KKY15359.1 209 GVKVLTVTAVLWALSIAVKRYKWAP 233
                   ***********************86 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.2e-06    0.0072       2      22 ..      28      48 ..      27      92 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.2e-06
  Cytochrome_CBB3  2 aaaaGaalykknCasCHgkgg 22
                     a+++G ++y++ CasCH  + 
       KKY15359.1 28 ALRRGFQVYREVCASCHSLNR 48
                     6899*************9544 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   4.2e-05      0.25       3      21 ..      31      49 ..      29     109 .. 0.77
   2 ?   -0.8   0.0      0.58   3.4e+03      74      89 ..     180     195 ..     152     197 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.2e-05
                 -HHHHHHTTGGGTB-SSSB CS
  Cytochrom_C  3 rGkelftanCaaCHgvegg 21
                 rG +++ + Ca+CH+++  
   KKY15359.1 31 RGFQVYREVCASCHSLNRV 49
                 899***99*******9865 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.58
                  TT--HHHHHHHHHHHH CS
  Cytochrom_C  74 erlteqeiadlaaYLk 89 
                  +  t q ++d++++L+
   KKY15359.1 180 PATTSQMAKDVVEFLN 195
                  3578899999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 1500.89
//
Query:       KKY15360.1  [L=426]
Description: putative glucanase b [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.2e-134  449.2   0.0   1.4e-134  449.0   0.0    1.0  1  Glyco_hydro_64  Beta-1,3-glucanase


Domain annotation for each model (and alignments):
>> Glyco_hydro_64  Beta-1,3-glucanase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  449.0   0.0    8e-139  1.4e-134       2     369 .]       4     368 ..       3     368 .. 0.96

  Alignments for each domain:
  == domain 1  score: 449.0 bits;  conditional E-value: 8e-139
                     -EEEEEEEESTTGGEEEEEEEE-TTT--.EEEE-TTS-EEE--GGGGTSTT-EEEE.EB-ETTT-.....SEEEE-SE.EEEEEEEEESS---BE CS
  Glyco_hydro_64   2 tlpltlvnntgsddvyayvtGldlatngalvlldadGtllyvpaspntaskkltpleediaiplgapgstktvtiPkqiasgRiyfsvgkkLkfl 96 
                     +l+++l+n+t+s++vyay+tG ++++nga+vll+a+G+ ly+p++p   +++++pl+ed+aiplg pg+t tvtiP qia+gRi+fs + kL+fl
      KKY15360.1   4 SLQIQLQNQTNSNHVYAYITGIAIQDNGARVLLKANGHDLYYPQNP---PAIGSPLAEDCAIPLGPPGNTVTVTIP-QIAGGRIWFSCEGKLTFL 94 
                     79********************************************...99*************************.89**************** PP

                     EEE-TT-..EEE---TTSTT-TTTT--EEEEEEEE.TTEEEEE---SSEE-.S-EEEEEEESSS...-EEEEE-S-HHHHHHHHHHHS...-HHH CS
  Glyco_hydro_64  97 lneasgp.palvePsvtnpsDpnanvnfdfaEftynsaglfaNisyVDfvs.lplgleltgasgatqtvkglkadglakvcaalkaqaakdgaaw 189
                     ln    p palvePsv npsDpnan+nf+faEft+n+++lfaNisyVDfvs lp++l+l++a g++q+v+g+++dgl++++++l+aqa+kdg++w
      KKY15360.1  95 LN----PgPALVEPSVLNPSDPNANINFGFAEFTLNNDQLFANISYVDFVSrLPIALTLQTAGGGVQHVSGMHPDGLDRIADGLRAQARKDGKPW 185
                     **....439************************************************************************************** PP

                     HTTB-......SS-EE-TTSTT-TTST.TTTTHHHHHHHHHHTTTS-.EEEEETT..EEEEEEE.E.TEEEEEETTE-S---HHHHHH---S-HH CS
  Glyco_hydro_64 190 dklvvkdsdgkvlrvlsPnkgsalneafagYfdsyvdevwskYated.LtvdtqakaGtvtGrvsg.daltfgdggsfakPstadifgcnsGpfa 282
                     dkl+v+ +dg++lr+l+P++g+a++++f+gY+++ +++vw+kY++ + + ++tqa++G v+G +++ ++l + +g+sf+kP+tadi+gcnsGpf+
      KKY15360.1 186 DKLIVQ-RDGTTLRALNPTHGNAVGANFDGYYEPFIEQVWQKYSQGSrMRINTQAGPGIVQGSINHrGELII-GGESFSKPNTADILGCNSGPFT 278
                     *****7.59****************99*****************8776*****************77*****.8899****************** PP

                     ......HHHHHHHHHHHHHTT-TT-.....GGGTTGGGTTS..SS-HHHHHHHHTBGGG----STTTTGG.....G-S--EEESSEEEEEEEE CS
  Glyco_hydro_64 283 tds.a.ekavqarLaAAfnRstllltadaqpskeeastyYkkeptNhYarlvHensvdgkgYaFaYDDvnp....dqsglvsdgnpksltvtv 369
                     t++ + ++a+++rLaA f Rstll   +++ps+  +st+Yk++ptNhY+r+vHen++dgkgYaFaYDDv+p    dqsg+v++g+p++++v+v
      KKY15360.1 279 TGPsPtRNAIIPRLAASFLRSTLL-HVEDHPSD--PSTHYKHDPTNHYSRIVHENNLDGKGYAFAYDDVQPdggaDQSGKVNAGDPTVFIVAV 368
                     766446******************.79999*94..7****6669*********************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.52
# Mc/sec: 2482.30
//
Query:       KKY15361.1  [L=563]
Description: putative cp2 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-81  272.2   0.0    1.1e-80  270.3   0.0    1.8  2  CP2       CP2 transcription factor
  ------ inclusion threshold ------
      0.062   13.9   0.1       0.19   12.4   0.1    1.8  1  AKNA      AT-hook-containing transcription factor
       0.11   11.2   0.0       0.16   10.7   0.0    1.1  1  Tektin    Tektin family


Domain annotation for each model (and alignments):
>> CP2  CP2 transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.3   0.0   1.8e-84   1.1e-80      29     230 .]      16     234 ..       5     234 .. 0.95
   2 ?   -1.2   0.0      0.17     1e+03      41      77 ..     495     531 ..     489     538 .. 0.82

  Alignments for each domain:
  == domain 1  score: 270.3 bits;  conditional E-value: 1.8e-84
         CP2  29 steksrfevtLeaptamikkvneepltYLNkGQaYsislkdlgaaklselkgkklksvvrvsFeeeklrskeakllklWkegrgte..........ave 117
                   ek+r++vtL+aptamik+++e+p++YLNkGQaY +s++d++   ++     +++++vrvsFe+e++rsk+ ++++lWkegrgt+          ave
  KKY15361.1  16 MGEKFRYHVTLSAPTAMIKNAEEIPISYLNKGQAYTMSVIDTT-PLIPPPGPVRYRTFVRVSFEDEQQRSKPSACWQLWKEGRGTNeahqrggkllAVE 113
                 5699***************************************.4555556679********************************************* PP

         CP2 118 ivdvPlsggveeqkntqvelesssfnalsvtW.....ngeeevkiavrvNclStdFsssKGvkGvPlrlqieTesidesskela....klevafCkvKv 207
                 +vd P +gg +++ + q+eles+sf++++vtW     +g  +++i+vr+N+lStdFs+sKGvkG+P+rl+++Te++++s+++++    + ev+fCkvK+
  KKY15361.1 114 YVD-PNQGGDDSSRKPQIELESASFDGFCVTWspnpmTGGADCAISVRFNFLSTDFSHSKGVKGIPVRLCAKTEMLSSSPSQPPsltgEPEVCFCKVKL 211
                 ***.****************************998888889*****************************************99887559********* PP

         CP2 208 FkdkGAeRKlkndvakvkkriek 230
                 F+d+GAeRKl+ndva+vkk+iek
  KKY15361.1 212 FRDHGAERKLSNDVAHVKKTIEK 234
                 ********************987 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.17
         CP2  41 aptamikkvneepltYLNkGQaYsislkdlgaaklse 77 
                 +p++++   +e+ ++    GQ   ++l+d+ ++  ++
  KKY15361.1 495 TPKSIKIVIDEDVMSEVPEGQDMFVELHDAPENMAVK 531
                 69999999******************99998554444 PP

>> AKNA  AT-hook-containing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   3.2e-05      0.19      41      80 ..     218     257 ..     213     274 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.2e-05
        AKNA  41 sreleaeIyqlgqrleeLkdqtdqlkqkveefskdiaqds 80 
                 +r+l   + + ++ +e+Lk q+ q  + + +f+k+ +  s
  KKY15361.1 218 ERKLSNDVAHVKKTIEKLKQQVAQAESGMGSFGKRKRSGS 257
                 79999*****************************987766 PP

>> Tektin  Tektin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   2.7e-05      0.16     311     350 ..     209     249 ..     207     255 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.7e-05
      Tektin 311 vElcrDe.aqyrLveEvkeleetieaLkeklaeaeaslkaL 350
                 v l rD+ a+ +L ++v ++++tie+Lk+++a+ae+ + + 
  KKY15361.1 209 VKLFRDHgAERKLSNDVAHVKKTIEKLKQQVAQAESGMGSF 249
                 778888758999**********************9877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.51
# Mc/sec: 3329.81
//
Query:       KKY15362.1  [L=672]
Description: putative zinc [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.3e-135  451.0   0.0   1.9e-133  445.2   0.0    2.5  1  Metallopep    Putative peptidase family
  ------ inclusion threshold ------
      0.042   13.8   0.0       0.13   12.2   0.0    1.8  1  Jacalin       Jacalin-like lectin domain
      0.045   13.9   1.8      0.081   13.1   1.8    1.4  1  Reprolysin_5  Metallo-peptidase family M12


Domain annotation for each model (and alignments):
>> Metallopep  Putative peptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  445.2   0.0  3.2e-137  1.9e-133       2     426 ..      22     420 ..      21     421 .. 0.96

  Alignments for each domain:
  == domain 1  score: 445.2 bits;  conditional E-value: 3.2e-137
  Metallopep   2 ievenlqdneevsqpvvlvkGkisekksekkkgkvkvehndks.fppltwpvndseFKalvhLspgenrltve...........kesevasseltlnyk 88 
                 +++++++d ++v+q+++ ++G+i+e  s+  +g+++++h  ++  pp++wpv +s+FKalv+Lspg n+++++           +++ ++s+ + +ny 
  KKY15362.1  22 PRITSISDRTVVYQKLLSLSGEIGEALSRPIDGTLTINHTSDAaCPPTSWPVFESTFKALVYLSPGWNNIRIDftspklaskdgTSNPAHSTFIAINYL 120
                 578999*********************************98888******************************************************* PP

  Metallopep  89 pleqnppvhlvilvakdsdgtfdapeaklekeegndldaaikklrlaarLlQaftaeklrrkglgrrtFrleeevetdtlvq...esetlrsevkvhvl 184
                 pl+++pp++lv+l+akds+gtfdap++++e +egn+ld ai+k r+aa L+Qaftae++ r+g+grr+Fr+eee++t+tl+    es+++++e++vh  
  KKY15362.1 121 PLTNTPPLQLVMLLAKDSPGTFDAPPDRVE-REGNTLDIAIRKYRMAAHLWQAFTAEQMFRNGFGRRCFRFEEEWQTGTLSArdwESNRMKNEARVH-- 216
                 ******************************.**************************************************8555555555555555.. PP

  Metallopep 185 rsektvaelrdldlAQQnskakdedeLfqiaaealkksgepesdkkvkvavllldthydkkrklitgHaALGGggseikLaiFGshglyswPssleevv 283
                                 Q++ a++++eLf ia++a+k++++p  ++k++vavllld+h+d+  ++i gHaALGGg ++i+La+FGsh+l+++Ps++e+vv
  KKY15362.1 217 ---------------VQHKGATKNGELFTIAKDAVKQHFNPGFGQKQHVAVLLLDAHWDTAAQTIVGHAALGGGADNIQLAVFGSHALHTYPSCIEDVV 300
                 ...............4778999***************************************************************************** PP

  Metallopep 284 pafldatrvdtaevanDsnergtywealaitlGAflHEiGHllglpHqedGvmlrdydalnrsfttreaeskrtkskgkrkvlpkeectwsrldalrfr 382
                 p f+d+                t+wea++i++GA+lHE+GHl+g+pHqe+G+mlrdy+++nr+f++re +s+rt++ g+  + +++ec w+rld+lrfr
  KKY15362.1 301 PTFSDC----------------TTWEAANIGIGAHLHEVGHLFGCPHQESGIMLRDYVRFNRTFMVREYFSSRTNQDGQLVCQKDDECAWHRLDLLRFR 383
                 ****98................57******************************************************9999999************** PP

  Metallopep 383 yhpsfalpgdtsskpsdenkkklskpsvypveneevliksesgi 426
                 +hp+f+lp+d   +p+d       + +v+pve + ++i+++sg+
  KKY15362.1 384 FHPCFRLPSDMAVNPDD-------SIQVWPVEDNRMIITAASGV 420
                 **********9999998.......99*************99997 PP

>> Jacalin  Jacalin-like lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.1e-05      0.13      14     127 ..     561     665 ..     546     670 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.1e-05
                 EEEEEEESSSEEEEEEEEEETTSEE-EEEEEEEETTBSEEEEEETT.T--EEEEEEEEEEESSSEEEEEEEEEEETTS-EEEEEC...--SEEEEEE-S CS
     Jacalin  14 kvyvgqgedgiayikfeYvkaggkvegdehGkkgllgteefeidyp.dEyitsVegtydkvsvesevitsLtfkTnkgrtselfg..tksgtkfsleek 109
                 kvy g+  dg   i+f Y++++ +  g+  Gk g+   +ef +d   +E ++   +         + i + ++ T++gr se++g  + +  +  ++  
  KKY15362.1 561 KVYHGFALDG---IEFCYEDGESQLFGTTGGKPGG---DEFCLDTRrSETLMGFYVRAG------KWIDGVQLLTSQGRRSEFYGnaQGGSGHTLIPPR 647
                 4444554444...5999999888777887777777...999999998998876666555......5999999999999999999963223334555669 PP

                 SEEEEEEEEEESSSEEEE CS
     Jacalin 110 gkkivGFhGragnllnal 127
                 g ++ G  G+ g +++ +
  KKY15362.1 648 GYHLAGISGTVGRWVDGF 665
                 999999999999888876 PP

>> Reprolysin_5  Metallo-peptidase family M12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.8   1.4e-05     0.081      79     159 ..     234     332 ..     191     359 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.4e-05
  Reprolysin_5  79 efqsassalrgqqnddlailflmtnfsgg....vGlAwlgqlcnsgsagsvstrveks...............nsvvvstate....vqvvaHElGH 152
                   ++ +++++  + q++++a+l+l+   ++     vG A+lg+ + + + + +      s               ++  ++t+++    + +  HE+GH
    KKY15362.1 234 DAVKQHFNPGFGQKQHVAVLLLDAHWDTAaqtiVGHAALGGGADNIQLAVFG-----ShalhtypsciedvvpTFSDCTTWEAanigIGAHLHEVGH 325
                   3335566666677778999999999888755677777776666555533333.....22333356688888885555555555444477889***** PP

  Reprolysin_5 153 nfGavHD 159
                    fG++H 
    KKY15362.1 326 LFGCPHQ 332
                   ******5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.48
# Mc/sec: 4182.47
//
Query:       KKY15363.1  [L=690]
Description: putative rrna processing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-17   62.1   0.4        0.1   12.4   0.0    9.0 10  PUF       Pumilio-family RNA binding repeat


Domain annotation for each model (and alignments):
>> PUF  Pumilio-family RNA binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.035   6.3e+02       5      35 .]     115     145 ..     111     145 .. 0.81
   2 !    6.7   0.1   0.00035       6.3       1      23 [.     147     169 ..     147     172 .. 0.91
   3 ?    1.9   0.0     0.012   2.1e+02       2      28 ..     207     234 ..     206     239 .. 0.76
   4 ?   -1.7   0.0      0.16   2.8e+03      18      29 ..     279     290 ..     278     296 .. 0.79
   5 !   10.1   0.0   2.9e-05      0.53       5      24 ..     295     314 ..     291     319 .. 0.85
   6 ?    1.1   0.0     0.021   3.8e+02      10      32 ..     355     377 ..     349     380 .. 0.76
   7 !    3.8   0.0     0.003        53       2      25 ..     384     407 ..     383     413 .. 0.82
   8 ?   -1.6   0.0      0.15   2.7e+03      12      26 ..     499     514 ..     498     521 .. 0.80
   9 !   12.4   0.0   5.6e-06       0.1       6      25 ..     531     550 ..     528     557 .. 0.86
  10 !   11.5   0.0   1.1e-05      0.19       2      24 ..     565     587 ..     564     595 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.035
                 GHHHHHTSTTHHHHHHHHHHHSCHHHHHHHH CS
         PUF   5 nlvqLstdqyGnyvvQkllehateeqkklil 35 
                 + ++ ++ q  ++ +++l+  + + q ++++
  KKY15363.1 115 KELKVACSQSCSRYMERLILLSNPDQLRSLF 145
                 667778888889*******999999998876 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00035
                 HHGGGHHHHHTSTTHHHHHHHHH CS
         PUF   1 sikgnlvqLstdqyGnyvvQkll 23 
                 +++++++ L++++++++ ++ l+
  KKY15363.1 147 KFQTHFLHLVQHRFASHCCEALF 169
                 5789*************999987 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.012
                 HGGGHHHHHTSTTHHHHHHHHHHH.SCH CS
         PUF   2 ikgnlvqLstdqyGnyvvQklleh.ate 28 
                 ++++l +L t ++++++v+ l+ + ++e
  KKY15363.1 207 LSDSLGYLLTERFASHAVRVLILVlSGE 234
                 56677789999********999885555 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.16
                 HHHHHHHHSCHH CS
         PUF  18 vvQkllehatee 29 
                 ++Qkl+  at++
  KKY15363.1 279 ALQKLIGSATSS 290
                 69****987765 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 2.9e-05
                 GHHHHHTSTTHHHHHHHHHH CS
         PUF   5 nlvqLstdqyGnyvvQklle 24 
                 +l  L+t++ Gn v+Q ll 
  KKY15363.1 295 YLRALATHPTGNPVLQLLLR 314
                 56669************996 PP

  == domain 6  score: 1.1 bits;  conditional E-value: 0.021
                 HTSTTHHHHHHHHHHHSCHHHHH CS
         PUF  10 stdqyGnyvvQkllehateeqkk 32 
                   d+ G++++++l + a+ +  k
  KKY15363.1 355 LYDPSGSRLMECLVQNASGKIFK 377
                 55888********9997766655 PP

  == domain 7  score: 3.8 bits;  conditional E-value: 0.003
                 HGGGHHHHHTSTTHHHHHHHHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQklleh 25 
                 +k++ ++L+++  ++yvv +++++
  KKY15363.1 384 LKERMITLAKNDIASYVVIRVIQR 407
                 68899************9777766 PP

  == domain 8  score: -1.6 bits;  conditional E-value: 0.15
                 STTHHHHHHHHHHH.S CS
         PUF  12 dqyGnyvvQklleh.a 26 
                 d +G+ + Q++l++ a
  KKY15363.1 499 DLHGSLLAQTILQTpA 514
                 889**999***99644 PP

  == domain 9  score: 12.4 bits;  conditional E-value: 5.6e-06
                 HHHHHTSTTHHHHHHHHHHH CS
         PUF   6 lvqLstdqyGnyvvQklleh 25 
                 lvqL+ d+ +++v+Q  l  
  KKY15363.1 531 LVQLALDPIASRVIQAALNS 550
                 89**************9974 PP

  == domain 10  score: 11.5 bits;  conditional E-value: 1.1e-05
                 HGGGHHHHHTSTTHHHHHHHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQklle 24 
                 +++++ +L+td  G++vv  l++
  KKY15363.1 565 MLDHIFELATDVSGSHVVDSLWD 587
                 89****************98887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.48
# Mc/sec: 4336.96
//
Query:       KKY15364.1  [L=543]
Description: putative glutamate decarboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-75  254.6   0.0    2.4e-75  253.6   0.0    1.4  2  Pyridoxal_deC    Pyridoxal-dependent decarboxylase conserved 
    2.3e-05   23.5   0.0    3.8e-05   22.8   0.0    1.3  1  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
      0.039   13.2   0.0       0.05   12.9   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase
        7.3    6.9   6.7        7.5    6.9   2.7    2.8  2  Ice_nucleation   Ice nucleation protein repeat


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.47   2.1e+03      15      41 ..      20      45 ..      17      49 .. 0.82
   2 !  253.6   0.0   5.3e-79   2.4e-75       4     374 ..      70     444 ..      67     445 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.47
                   SHH.HHHHHHHHHHCTGGGS--TTSTT CS
  Pyridoxal_deC 15 kaesleqilediekilapgvttwhspe 41
                   +ae+++++l+ +++ l+p+++  + +e
     KKY15364.1 20 RAEEVQNLLSGVQEQLVPFIKAAD-DE 45
                   678899**************9988.44 PP

  == domain 2  score: 253.6 bits;  conditional E-value: 5.3e-79
                    TGGGSCSSHHSSHH.HHHHHHHHHHCTGGGS--TTSTTBHCSSH....HHHHHHHHHHHHHT-BTSSTTTSHHHHHHHHHHHHHHHHHTT--GGGT CS
  Pyridoxal_deC   4 lkrlldeaapekaesleqilediekilapgvttwhspefhkllpagnslisllgdlLadainkngftweesPaltelevvvldwlaellglpeefl 99 
                    l++ l  ++p +    + +l+ ++ il   v+t   p f   l   ++ ++l+++lL +a n+n+  ++ sP+lt++e  v   la+l+gl     
     KKY15364.1  70 LREILKLKLPSNGTGRQGVLDTTNSILSHSVNTFA-PGFLDKLYGSTNAPGLAAELLLAALNTNVHVYQVSPVLTLIEKYVGRELAKLFGLV---- 160
                    6778889999999999999****************.8888777779*********************************************9.... PP

                    CCT-EEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTS.HHHHHCCEEEEEETTS-HHHHHHHHHHT-E...EEEE--BT.TTBB-HHHHHHHHHH CS
  Pyridoxal_deC 100 ekegggvlqvgssestllallAartkvikemkekgkelkeaeildklvlytsdqahssvekaalvlgvk...lrviplde.ngklrgaalekaiee 191
                    + + gg+  +g+s s+l +++ ar+++ +  k  g++ +      +lvl+ts++ah+s+ekaa+++g++   ++++p+d+  g+++++al ++i e
     KKY15364.1 161 GPSSGGISCQGGSASNLTSIVIARNNKYPSTKVYGNHHE----GRQLVLFTSAHAHYSIEKAAQACGFGsaaVISVPVDPiTGQMLPQALDHMIIE 252
                    44589****************************997733....589**********************9999*******86699************ PP

                    HHCTT.EEEEEEEEBS-TTT-BB--HHHHHHHHHHCT-EEEEE-TTGGGGGGSGGGGGGGTTGGGESEEEEECCCCTS--SS-EEEEESSCCGCHH CS
  Pyridoxal_deC 192 dkekGlipffvvatlGttvlgaFddlkelgdicekydlwlHvDAAyaGsaficpeirhllkgieradSitvnphKlllvlldcsalivkdkealqq 287
                    +k  G +pf+v+at+G+tvlg+Fd   ++ +ic+k++lw H+DA ++G  + +p   ++l+g  +adSi++nphK++ v++ cs l+  d ++ + 
     KKY15364.1 253 AKLSGKTPFYVNATAGSTVLGSFDPFPKISQICKKHNLWFHIDASWGGPFIFSPTLNNRLNGASLADSIAINPHKMMAVPVTCSFLLAADLQQFHA 348
                    ************************************************************************************************ PP

                    HH-EEECCCT.TT.......TTTSEECCCGSSSSSGHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTEEECS..TTBSSEEEEEE CS
  Pyridoxal_deC 288 alqleaeYLehed.......sdvaadlgtkaiplsrrvrilklwfvlralGveglqnqirksvelakyleklirkderfeiva..evelglVcFrl 374
                    a++l a YL+h++        +   d+ + +++++rr + lkl++ ++ +G+ g++  i +  ++a y+++l++ + +  +v+   + +  VcF +
     KKY15364.1 349 ANTLPAGYLFHSNpshpadeWQEPIDQADMTLQCGRRGDGLKLFLSWQYYGTIGYESMITNAHNVATYFAHLVNSHPDLLLVSdfPPPCLQVCFYY 444
                    ***********999767554455689****************************************************999996678899999976 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   8.6e-09   3.8e-05      92     177 ..     205     297 ..     190     331 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 8.6e-09
                  EEETTSHGGGTHHHHHHHHHHTEEEEEEEBET.TSCBEGGGHHHH-.....-.TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-T CS
  Aminotran_5  92 vvteaehhanlvpwqelakrtgakvkviplde.egeldldelekll.....n.ektklvaithvsnvtGtiqpveeigklakkkgalvlvDaa 177
                  + t+a  h  +  +++++ +  a v  +p+d+ +g++ +++l++ +     + +++ +v  t+ s+v+G ++p+++i +++kk++ ++++Da+
   KKY15364.1 205 LFTSAHAHYSIEKAAQACGFGSAAVISVPVDPiTGQMLPQALDHMIieaklSgKTPFYVNATAGSTVLGSFDPFPKISQICKKHNLWFHIDAS 297
                  4455555555556666666666777777776533444444443333444436377789*********************************97 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.1e-05      0.05      77     168 ..     208     296 ..     132     417 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.1e-05
                      ETT-HHHHSSTTHHHHCC--EEEEE-EBTT.TBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEE CS
  Beta_elim_lyase  77 tepahihfdetgaiaelagvklrdlknkea.GkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDg 168
                      + +ah+    + ++  ++++ ++ ++ +   G+m +++l  +i e +  + k+++ + +++  t      s +   ++++i+kk+++ +h+D+
       KKY15364.1 208 SAHAHYSIEKAAQACGFGSAAVISVPVDPItGQMLPQALDHMIIEAKL-SGKTPFYVNATAGST---VLGSFDPFPKISQICKKHNLWFHIDA 296
                      2224444444444444577777777766557**********9888444.677777554444444...34589999*****************8 PP

>> Ice_nucleation  Ice nucleation protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.23     1e+03       2       5 ..     112     115 ..     112     117 .. 0.90
   2 ?    6.9   2.7    0.0017       7.5       4      15 .]     467     478 ..     467     478 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.23
  Ice_nucleation   2 YGST 5  
                     YGST
      KKY15364.1 112 YGST 115
                     **** PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0017
  Ice_nucleation   4 STQTAredSSLi 15 
                     STQTA+  S L+
      KKY15364.1 467 STQTAQQNSILT 478
                     9********887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.47
# Mc/sec: 3504.56
//
Query:       KKY15365.1  [L=408]
Description: putative bicyclomycin resistance [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-19   67.5  23.2    4.8e-13   48.7  17.0    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   1.1     2e-09   3.6e-05       5      69 ..      98     161 ..      95     168 .. 0.92
   2 !   48.7  17.0   2.7e-17   4.8e-13     134     329 ..     163     401 ..     159     406 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2e-09
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllgl 69 
                 +f ++ +++i++p +   +++++++s +++ l ltly lg +++ ++++++s+ +Grr v+l ++
  KKY15365.1  98 LFSASVGSAIYTPGVE-EVSQQFHVSFTAALLPLTLYVLGLGFGPILAAPISETLGRRVVYLGTF 161
                 68899999*******9.9******************************************99876 PP

  == domain 2  score: 48.7 bits;  conditional E-value: 2.7e-17
       MFS_1 134 ailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........kgtgpaplvpawkallkdpvl.....w.......il 212
                 +++  +lg+ +a+++gWr++ +++ ++++   +   + lp++++ +k     + +        +    +pl+  +k +l+  v+     +       ++
  KKY15365.1 163 PAILFILGSGFAQNFGWRWTQWAHIFICVATYL---VALPQSETYKKVILLHRAKalgippppSNLPSSPLAR-LKVILTITVFrplnmLrlepivlAF 257
                 68899**************************88...8997877777777777777777777764444444444.5555555544433331333322244 PP

       MFS_1 213 lialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrls.dr....................lgrrrrlllallllll 286
                  i  +++f++++++++ +pl++  v+g++    gl+ ++  ++l+ ++++++++++ rl  ++                    l+++ rl  +l++ +l
  KKY15365.1 258 SIYTAFNFAILFSFFAAIPLIFEGVYGFNtgqsGLVFLS--IGLGNVLALPAFIIIDRLTyRKwtlqamaksnntattsshshLPPESRLPASLVGSVL 354
                 4444444557777****************9988888888..99999999999********777**************999999999************* PP

       MFS_1 287 aalglallavtssavllllvlvl....iGfglgfvfpsllalasdla 329
                 + l+l+++a+t+ ++++++v ++    +  g  +vf s + ++ d +
  KKY15365.1 355 LPLSLFWFAWTTRPSIHWAVPLIslipFAAGNLLVFYSCMLYMIDTY 401
                 ***********999999995555554566666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 2546.47
//
Query:       KKY15366.1  [L=578]
Description: putative transcription initiation factor tfiid subunit 12 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.9e-20   70.8   0.1    7.2e-19   68.1   0.0    2.2  2  TFIID_20kDa  Transcription initiation factor TFIID subunit A
  ------ inclusion threshold ------
        3.9    7.3  10.7       0.11   12.4   3.2    2.1  2  DUF2797      Protein of unknown function (DUF2797)


Domain annotation for each model (and alignments):
>> TFIID_20kDa  Transcription initiation factor TFIID subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.17   1.6e+03      36      50 ..     194     208 ..     192     212 .. 0.85
   2 !   68.1   0.0     8e-23   7.2e-19       1      68 []     459     531 ..     459     531 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.17
                  HHHHHHHHHHHHTT- CS
  TFIID_20kDa  36 svtkfacklakhRks 50 
                  ++t+   k+a++Rk 
   KKY15366.1 194 EMTQVQTKMAQYRKT 208
                  6788999******96 PP

  == domain 2  score: 68.1 bits;  conditional E-value: 8e-23
                  -HHHHHHHHHCC.....-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHHHS-- CS
  TFIID_20kDa   1 sKrklqdLvqqv.....dsetkldedvedlLleiaddFvesvtkfacklakhRksdklevrDiqlhlernynm 68 
                  sK+kl++Lv+++     +   +l ++ e+++l++ad+Fv++++++ac+lak R  ++l+ rD+q +ler+yn+
   KKY15366.1 459 SKNKLNELVREItgagpEDGDQLSPEAEEIVLNLADQFVDDLITSACRLAKLRGQSQLDIRDVQVILERQYNI 531
                  79**********999887778***************************************************8 PP

>> DUF2797  Protein of unknown function (DUF2797)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   3.2   1.2e-05      0.11      97     211 ..     141     256 ..     136     258 .. 0.86
   2 ?   -1.8   0.3      0.27   2.4e+03     119     159 ..     335     375 ..     320     403 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.2e-05
     DUF2797  97 idQGAvqai.plaevanRrlaglvevalket.vaDktnwrkmlksevedvdlsaeaeelaeliaeeselgaeaiesleaeeeveikypveeypekiksl 193
                 ++QG +qa+ +l e + R  + l +++l +  +++ ++ +++++   ++++   e +++++++a+ +++ aea ++le+ + ++ +++ e+ p++ +++
  KKY15366.1 141 VNQGTQQATdWLREAKMRFGQALQRMELGKAkMQELSKLAQQREAAGNPFQQN-EMTQVQTKMAQYRKTVAEANSFLERFKAQQSQFRSEAPPAQQNVA 238
                 789*9999856777999999999999**9887888888888888888877654.56789999999788888999999666******************* PP

     DUF2797 194 nlekeaeveGtllGikGq 211
                   ++++++eG +++ +Gq
  KKY15366.1 239 AASTGPQIEGAVEAPAGQ 256
                 *************99998 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.27
     DUF2797 119 vevalketvaDktnwrkmlksevedvdlsaeaeelaeliae 159
                  +va++++ + ++++ +  +s ++ +  ++ a++ ++  ++
  KKY15366.1 335 AQVAIQQQQQQQMQASTRPQSLSQSAAVQQSAQSYQNNQPQ 375
                 44444444444444444444444433333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2155  (0.120196); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.02u 0.38s 00:00:01.40 Elapsed: 00:00:00.55
# Mc/sec: 3153.14
//
Query:       KKY15367.1  [L=166]
Description: hypothetical protein UCRPC4_g06371 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   15.7   0.0      0.013   15.3   0.0    1.1  1  IFN-gamma  Interferon gamma


Domain annotation for each model (and alignments):
>> IFN-gamma  Interferon gamma
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   7.3e-07     0.013      32     116 ..      42     131 ..      28     143 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.3e-07
   IFN-gamma  32 adggsLfldilknwke..esdkkilqsqivs.fYfklFeklkdnqviqksletikedli..akffnssssklddFkklikisvndlkvqr 116
                  dg+  f +++  wk     +  +++s ++  +Yf l e +kdn+ +  sle++  d +    +f++  + ++  +++   + n +k+q 
  KKY15367.1  42 DDGKPTFRELVYAWKLatGHESEVFRSFVINiLYFILVEDIKDNSGLFDSLEKLDADALglWDVFEETATFRERRSTISLWEWNGKKIQT 131
                 58899999999999973345788*****99846*********************999752257888888888888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1074.23
//
Query:       KKY15368.1  [L=334]
Description: putativelike family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-14   53.5   0.0    6.1e-14   52.3   0.0    1.6  1  NAD_binding_10  NAD(P)H-binding
      4e-14   52.7   0.0    6.7e-14   52.0   0.0    1.2  1  NmrA            NmrA-like family


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   6.8e-18   6.1e-14       2     152 ..      46     187 ..      46     228 .. 0.78

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 6.8e-18
                     TTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHHHHHHHHHHHHCT--EEEEE CS
  NAD_binding_10   2 AtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggkdeegaknivdaakeagvkRfvlv 96 
                     A+G++G  l++ ll+++ +++t++ Rn++ ++ ++  +g+ v   d+t  edl + l+g+da+v+a+g++g d    k+++d a +a+vkRf+  
      KKY15368.1  46 ASGNIGAPLTQALLEAKIFNLTVVSRNTSNAT-FP--KGVIVHRSDMT-DEDLLSILRGQDAIVCAVGPTGFD--DQKRLIDLAIKADVKRFLP- 133
                     89*****************************9.76..68988889988.5899***************99985..57***************99. PP

                     EETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHH...SSSEEEEEEE-CEE-ST.-- CS
  NAD_binding_10  97 saigvgdevpgefgewnkellkaylaakraaeellra...sgldwTivrpggLtdep.tt 152
                     s + +        +++++++  + + ak    e+lr+    gl wT +  g+L d   + 
      KKY15368.1 134 SEFSIHT-----SSRVVRDV-MPLFNAKWSTIEYLRQkekEGLSWTGLATGFLFDWGmKQ 187
                     5555652.....23444443.478899********997777*************986332 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   7.5e-18   6.7e-14       6     219 ..      46     250 ..      45     256 .. 0.87

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 7.5e-18
                 TTSHHHHHHHHHHHHHT.-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GGS-HHHHHHHHHHHHHHHS-SEEEEEE-- CS
        NmrA   6 aTGrqGksvvrallkag.hkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfyskeiedgkklvdAakeaGvkhfiySslg 103
                 a+G++G+ +++all+a+ ++  ++ R+t++ +      +Gv +   d+ d+++l ++l+g d++ +++g   +  +d+k+l+d a +a vk+f++S++ 
  KKY15368.1  46 ASGNIGAPLTQALLEAKiFNLTVVSRNTSNATFP----KGVIVHRSDMTDEDLL-SILRGQDAIVCAVG--PTGFDDQKRLIDLAIKADVKRFLPSEFS 137
                 89*************5548999999999888765....5998889****99988.689***********..9*************************** PP

                 -GG.GT.SSS---TTTHHHHHHHHHHHHC...TS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHHHHHHHHHHHHH CS
        NmrA 104 ddndrsnaeepavphfdsKaeieeyvral...gipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGafvikilkdprk 199
                  +   s ++   +p+f++K +  ey+r+    g+  t +++gf     ++      +g   ++ +++t+  +g+++     + +   ++ ++il++p++
  KKY15368.1 138 IHT-SSRVVRDVMPLFNAKWSTIEYLRQKekeGLSWTGLATGFLFDWGMKQGI---FGFNLKD-HTATIWDEGDTQFSAT-NLATACQALVSILQNPED 230
                 999.6667777**********99999987788***********9888877332...3433344.4799999999877777.99999************* PP

                 HTTEEEEE-SEEE-HHHHHH CS
        NmrA 200 lkgkriklagntlsgneive 219
                 + ++++++a+   s n+i++
  KKY15368.1 231 TANQYVHVASFATSQNQILN 250
                 ****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 2104.44
//
Query:       KKY15369.1  [L=872]
Description: putative amidohydrolase 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (872 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.52
# Mc/sec: 5087.77
//
Query:       KKY15370.1  [L=291]
Description: putative kinetochore protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-19   69.6   1.7    6.2e-19   68.6   1.7    1.5  1  Mis14     Kinetochore protein Mis14 like


Domain annotation for each model (and alignments):
>> Mis14  Kinetochore protein Mis14 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   1.7   3.5e-23   6.2e-19       2     103 ..      79     198 ..      78     209 .. 0.82

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 3.5e-23
                 HHHCTEECTTBX.....STT.SHHHHHHHHHHTT.XXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCT--HHHHH--. CS
       Mis14   2 masesvvinGld.....sssksikdllsesqkeevEpfdlelnekvrslyqelEdltvevAqlRreaPrkiaeayakelkaeleeldeyleainelek. 94 
                 +a++ ++inGld     ++++s++++++ +q  e  p+d +l +k+ sly+elE+lt++vA+lRreaP k ae y ++l++  +e +e   ++++  + 
  KKY15370.1  79 SAAHGISINGLDatalpDQNSSTSRQIEPEQAIEYAPYDPRLTSKLSSLYAELESLTTQVAKLRREAPEKSAETYRQTLENVVAEEEE---RFKKDIDi 174
                 68999**********99999999999999999999*****************************************************...66553333 PP

                 .................------S CS
       Mis14  95 ...............qekkdpeed 103
                                ++ +dp+  
  KKY15370.1 175 synlpssttvsgkqtSQGEDPDTM 198
                 777877777776533333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       882  (0.049194); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 1871.01
//
Query:       KKY15436.1  [L=351]
Description: putative cop9 subunit 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.093   13.2   0.0       0.33   11.5   0.0    2.0  1  PCI       PCI domain


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.8e-05      0.33      38      96 ..     191     252 ..     111     254 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.8e-05
                 HHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSH............HHHHHHHHHHHHTTSSSEEEET CS
         PCI  38 llesLekkvrerllrqvskiyssislerlaklldlsv............devEkilvklIrdgeirakidq 96 
                 l+++++k  r+ ++ +++  +  +++          +             e+ +++++lI +g ++a i++
  KKY15436.1 191 LISEVYKAYRQFAVLRLANTFAALPIT---------EvaqrtspdptdlTETTQYISDLIVSGDLKAFISP 252
                 445555555555555555555555555.........255555555599*******************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 2130.60
//
Query:       KKY15437.1  [L=454]
Description: putative gamma-glutamyl phosphate reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-08   31.6   6.9    7.9e-06   24.6   3.4    2.7  2  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   3.4   4.4e-10   7.9e-06      33     285 ..      10     278 ..       2     291 .. 0.77
   2 !    6.6   0.1   0.00013       2.3     382     433 ..     346     397 ..     340     413 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 4.4e-10
                 HHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHH.HHHHHHHHHHHHHHHHSEEE.................E CS
      Aldedh  33 aavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eve.eaidvlryyaelaeklegev.................l 112
                 +a ++A  a ++ a+l+ e+R e L++++d+l ++k  + e+  l+     + +++ e++ ++ + l+++     k+e+                   l
  KKY15437.1  10 EAAKQASIASRTLATLSTEKRNEALAALHDALLREKPTILEANRLDLEAAKKATENgELRqSTFKRLDLTR--PGKYEDMLrgildvreledpigkvtL 106
                 67888999999*********************999999999988777666666666565524444444433..22222211223345566666666552 PP

                 EEC....TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHH....HHHHHHHTTS-TTSEEE--SSTCCHHHHHHH- CS
      Aldedh 113 pss....egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsall....laelfeeaglPkgvlnvvtgsgsevgealveh 203
                   +    +g +   +  P+Gv ++I  ++    ++a  +  a+  GN+ +lK  +e++ s  +    + + + e  +P+ ++++v +  + + + l  +
  KKY15437.1 107 --RteldDGLELERVSCPIGVLLII--FEARPEVIANIASLAIKSGNAAILKGGKESTQSFQAisnvISRTLSETAVPNAAIQLVKT-RDVIDQLLGLD 200
                 ..134435666666666*****999..8999999999999************88777766655001155666777**********88.6677778889* PP

                 TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHH CS
      Aldedh 204 pevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydef 285
                 + +d+v   G++e  +    + +    +v+    G  ++ v++daD   av  ++ + +g+    C a++ llv+++    +
  KKY15437.1 201 QYIDLVIPRGGNELVKYCKDHTK---IPVLGHADGLCAIYVHSDADPAIAVPILADSKCGYP-AACNAVETLLVHQDSLTTV 278
                 **********9998888877766...99******************************9997.79**********9876665 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.00013
                 SHHHHHHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTT CS
      Aldedh 382 deeeaieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaea 433
                  ++ ai+  N+     +  + t++ + a r+ ++++   vy+N st++a  +
  KKY15437.1 346 AVDAAISHINAHSSHHTDVILTTSKDLADRFFASVDSAGVYWNASTRFADGM 397
                 57899****************************************9888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.34s 00:00:00.98 Elapsed: 00:00:00.53
# Mc/sec: 2554.99
//
Query:       KKY15438.1  [L=464]
Description: putative mitochondrial carrier [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-91  304.8   2.5      2e-91  304.5   2.5    1.1  1  Ribosomal_L18    Ribosomal protein 60S L18 and 50S L18e
    1.2e-52  175.8   3.9    3.9e-23   81.2   0.1    3.3  3  Mito_carr        Mitochondrial carrier protein
    0.00038   19.7   0.2      0.021   14.0   0.0    2.9  3  Serine_protease  Gammaproteobacterial serine protease
    0.00047   20.8   0.6     0.0012   19.5   0.6    1.8  1  Ribosomal_L27A   Ribosomal proteins 50S-L15, 50S-L18e, 60S-L2


Domain annotation for each model (and alignments):
>> Ribosomal_L18  Ribosomal protein 60S L18 and 50S L18e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.5   2.5   4.5e-95     2e-91       1     187 []     277     464 .]     277     464 .] 0.98

  Alignments for each domain:
  == domain 1  score: 304.5 bits;  conditional E-value: 4.5e-95
  Ribosomal_L18   1 gidlkekkkkkskrkapksenvylklLvklyrfLarRtdskFnkvvlkrLfmsrinrpplslsrlvkkvkkkee....ekkiavvvgtvtdDvrll 92 
                    gidl++++ k+s+rkapks+nvylklLvklyrfLarRtds+Fnkv+l+rLfms+inrpp+s+sr+v+   +k++    ++k++v+vgtvtdD+rll
     KKY15438.1 277 GIDLDRHHVKNSHRKAPKSDNVYLKLLVKLYRFLARRTDSNFNKVILRRLFMSKINRPPMSISRIVSIAANKNSgeahKGKTIVIVGTVTDDNRLL 372
                    799988888**********************************************************999887788889***************** PP

  Ribosomal_L18  93 evPklsvaALrftetararilkaGGeiltlDqLalraPtGkntvLlrGkkkareavkhfgaapgvphshkkpyvrskgrkfekargrrksrgfkv 187
                    evP+lsvaAL+ft+ta+ari+kaGGe +tlDqLal++P+G+nt+LlrG+k+areavkhfg+   +ph+hkkpy++skgrkfekargrr+srgfkv
     KKY15438.1 373 EVPQLSVAALKFTATAKARIEKAGGETITLDQLALKSPKGENTLLLRGPKNAREAVKHFGF---GPHKHKKPYIESKGRKFEKARGRRRSRGFKV 464
                    ************************************************************9...*****************************96 PP

>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   3.6e-08   0.00016       4      37 ..      21      54 ..      19      60 .. 0.88
   2 !   81.2   0.1   8.6e-27   3.9e-23       2      94 ..      60     159 ..      59     162 .. 0.91
   3 !   73.1   0.1   2.8e-24   1.3e-20       4      79 ..     167     242 ..     164     245 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3.6e-08
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
   Mito_carr  4 svlkellaGglagavatlvttPldvvKtrlqtqk 37
                +v++ ++aGg+agav+ +v+ Pl+++K+  q  +
  KKY15438.1 21 PVTAAFIAGGVAGAVSRTVVSPLERLKILYQFME 54
                67899***********************999765 PP

  == domain 2  score: 81.2 bits;  conditional E-value: 8.6e-27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS......HHHHHHHHHHHH.HHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   2 elsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa......ildvlkkiykee.GlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 +l+++++l++Gglag++++++t+Pld+v+trl +q+ s ++ + ++      ++ ++ k+yk+e Gl glyrG++p++ +vap+ +l+f++ye++++++
  KKY15438.1  60 DLTPVRRLVCGGLAGITSVTFTYPLDIVRTRLSIQSASFAALGPRSetklpgMWATMVKMYKTEgGLNGLYRGIIPTVAGVAPYVGLNFAVYESVREYF 158
                 57899********************************987766665778899*********9662689*****************************99 PP

                 C CS
   Mito_carr  94 l 94 
                 +
  KKY15438.1 159 T 159
                 7 PP

  == domain 3  score: 73.1 bits;  conditional E-value: 2.8e-24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapas 79 
                  ++++l+aG+++g va+++t+P+dv++ r+q+++ s+   ++++i++++kki  eeGlrgly+G++pnll+vap++
  KKY15438.1 167 AWYRKLAAGAISGGVAQTCTYPFDVLRRRFQINSMSGIGYQYTSIFQAVKKITAEEGLRGLYKGIGPNLLKVAPTT 242
                 5789**********************************999999*****************************986 PP

>> Serine_protease  Gammaproteobacterial serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.017        75     174     198 ..      64      88 ..      13      96 .. 0.86
   2 ?   -1.9   0.0      0.33   1.5e+03      43      61 ..     123     139 ..     113     145 .. 0.76
   3 !   14.0   0.0   4.8e-06     0.021     151     199 ..     146     194 ..     136     237 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.017
  Serine_protease 174 ynkllaGalsGviAtvlttifnsyk 198
                      +++l+ G l+G++  ++t+++   +
       KKY15438.1  64 VRRLVCGGLAGITSVTFTYPLDIVR 88 
                      689999*************987655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.33
  Serine_protease  43 sgGlfralYrGflayalag 61 
                      +gG + +lYrG+++ ++ag
       KKY15438.1 123 EGG-LNGLYRGIIP-TVAG 139
                      344.799*****99.8887 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 4.8e-06
  Serine_protease 151 vnFaalgvvedeiakflkindelynkllaGalsGviAtvlttifnsykD 199
                      +nFa+   v ++ + +   n   y+kl+aGa+sG +A ++t++f  ++ 
       KKY15438.1 146 LNFAVYESVREYFTPKGDKNPAWYRKLAAGAISGGVAQTCTYPFDVLRR 194
                      47888888888888888888999*********************88765 PP

>> Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.6   2.7e-07    0.0012      72     127 ..     339     400 ..     283     401 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.7e-07
                     --EEEGGGTTTTSSS....SEEEE--S.....---.-.-EEEESEE-HHHHHHHHHTT-EEE CS
  Ribosomal_L27A  72 aeeidleelaeaglikkkdgvKvlgkg.....eltkk.lkvkaskfSkkAkekIeaaGGkve 127
                     +  +++++ +++g ++k + + ++g+       l+ + l+v a kf+++Ak++Ie+aGG+ +
      KKY15438.1 339 SRIVSIAANKNSGEAHKGKTIVIVGTVtddnrLLEVPqLSVAALKFTATAKARIEKAGGETI 400
                     45667777777777777666666666444443334445*********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.33s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 2871.58
//
Query:       KKY15439.1  [L=98]
Description: putative pre-mrna-splicing factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.49
# Mc/sec: 602.95
//
Query:       KKY15475.1  [L=748]
Description: putative oligopeptidase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-51  175.3   0.0    2.5e-51  174.2   0.0    1.6  2  Peptidase_S9   Prolyl oligopeptidase family
    4.8e-05   23.2   0.4      0.034   14.1   0.0    3.1  3  PD40           WD40-like Beta Propeller Repeat
    0.00036   19.3   0.0      0.027   13.2   0.0    2.2  1  AXE1           Acetyl xylan esterase (AXE1)
     0.0041   16.8   0.1      0.024   14.3   0.1    2.1  2  Esterase       Putative esterase
  ------ inclusion threshold ------
       0.13   11.0   0.1       0.24   10.2   0.1    1.3  1  Peptidase_S28  Serine carboxypeptidase S28


Domain annotation for each model (and alignments):
>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.7   6.1e+03      88     170 ..      99     177 ..      93     183 .. 0.51
   2 !  174.2   0.0   7.1e-55   2.5e-51       1     209 [.     483     691 ..     483     693 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.7
                   G-SEEEEESE---CCCHHCSTTSTHHHCCCC--TTTCHHHHHHHHHH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH CS
  Peptidase_S9  88 lFkaavaevpvvdvlrydsdtdllteeymewgnpeeneegykelspyspldnvkaypplLlihGlaDdrvppaealklvaaLq 170
                   +++a+  + +++++    +++d  +  + +  np  + + y+   + +  +  k+y +l++ h  +D+ v  ++ + +   Lq
    KKY15475.1  99 TYAAGTVAGGISNLKLCTLEDDKVAIAVSGLANP--DGTLYNPKDAPTSRTTAKIYDSLFVRH--WDSYVEAQKNVIWTGVLQ 177
                   5555555556665555555555555555555555..344443333333333334566655555..555666666666655555 PP

  == domain 2  score: 174.2 bits;  conditional E-value: 7.1e-55
                   ----HHHHHHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTT.S--GGGEEEEEETHHHHHHHHHHH.H-GGG-SEEEEE CS
  Peptidase_S9   1 psfsselqlladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakeg.yvdserlaitGgSyGGyltgaaln.qrpdlFkaavae 95 
                   + ++++++++a++Gyvv+ +n++Gs+ yG++f+d++++ +g + ++D+++++e++ +   +vd++r+++ G+SyGGy+++++++ + +++Fka+v++
    KKY15475.1 483 WGTRWNPAVFAEQGYVVICPNPTGSTSYGKKFTDDIQNSWGGKPYEDLVKGIEYIESSLaFVDKDRMIAAGASYGGYMVNWIQGhELGRRFKALVCH 579
                   5678***************************************************99999************************999********** PP

                   SE---CCCHHCSTTSTHHHCCCC--TTTCHHHHHHHHHH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSH CS
  Peptidase_S9  96 vpvvdvlrydsdtdllteeymewgnpeeneegykelspyspldnvkaypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkpr 192
                   ++v+ ++ +  +++ + + ++  g  +e +e+y ++ p +   n  +++p L+ih ++D+r ++ae+l  ++ Lq +g+++++l+fpde+H+v k++
    KKY15475.1 580 DGVFSMTGQLASEEQYFPLHDLKGPIWEVPENYAQWDPSRFCGN--WSTPQLVIHNELDYRLTIAEGLSAFNVLQMRGVESRFLTFPDENHWVLKQE 674
                   ************999556455556669*****************..*************************************************** PP

                   HHHHHHHHHHHHHHHHC CS
  Peptidase_S9 193 akveelarllaFlkeal 209
                   ++  +++ +l+++++ +
    KKY15475.1 675 NSLVWHRVVLDWINRFV 691
                   ************99865 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       4.1   1.5e+04      15      23 ..      18      26 ..      16      28 .. 0.72
   2 !   14.1   0.0   9.5e-06     0.034      10      25 ..     270     285 ..     266     288 .. 0.90
   3 !    5.7   0.1    0.0041        15      13      24 ..     330     341 ..     327     341 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4.1
                EE-TTSSEE CS
        PD40 15 sfSPDGkrl 23
                + S DG+  
  KKY15475.1 18 APSADGTLA 26
                5699**765 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 9.5e-06
                 .EEEEEE-TTSSEEEE CS
        PD40  10 negaPsfSPDGkrlaF 25 
                   ++P fSPDG ++aF
  KKY15475.1 270 AATSPVFSPDGESIAF 285
                 5799***********9 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0041
                 EEEE-TTSSEEE CS
        PD40  13 aPsfSPDGkrla 24 
                 a+ +S+DGk ++
  KKY15475.1 330 AIMWSNDGKNIY 341
                 578********8 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   7.5e-06     0.027      50     187 ..     430     560 ..     413     584 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.5e-06
                 S-SSEEEEEEEEEEGGGEEEEEEEEEES...SSSSEEEEEEEE-TT--GGGHHHHHHHHHTT-EEEEEE-TTTS..SSB-SSCCSS-SSSSTTTTTTST CS
        AXE1  50 elkavkvydltfegvrgarikaklvlPke..keeklPavvefhGYegsrgeihdllnyaaaGyavvvmdvRGqggesedkvgskgnkakGfiirGlldk 146
                  l+  +v +l ++g+ +++i+a++++P++  +e++ P+    hG  ++++  +    +  a +a       G      +++gs+   + G   +  +d 
  KKY15475.1 430 GLSRKQVSELWWKGSDDQPIHAWMMKPSNfsSEKRYPLAYLIHGGPQGAWLDSWGTRWNPAVFAE-----QGYVVICPNPTGST---SYG--KKFTDDI 518
                 56667888999****************96336777888877777666655544444444333332.....22222222233322...333..3445667 PP

                 TT-HHHHHHHHHHHHHHHHH.TSTTEEEEEEEEEEETHHHHH CS
        AXE1 147 eklyyrrvflDavrlveiva.slpevDeeRvavlGasqGGal 187
                 ++ +  + + D v+ +e +  sl +vD++R+ ++Gas GG +
  KKY15475.1 519 QNSWGGKPYEDLVKGIEYIEsSLAFVDKDRMIAAGASYGGYM 560
                 777777889999999997752689999999999999999976 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.34   1.2e+03     117     163 ..      99     143 ..      87     175 .. 0.74
   2 !   14.3   0.1   6.7e-06     0.024       6     166 ..     447     616 ..     444     649 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.34
                 EEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CCHCHHHCTTCC CS
    Esterase 117 ravaGqSmGGlgALilalkhpdrFgsvssfSpivnpsnamWgqeeke 163
                 + +aG   GG + L l +   d+   +++ S+++np   ++ +++ +
  KKY15475.1  99 TYAAGTVAGGISNLKLCTLEDDKV--AIAVSGLANPDGTLYNPKDAP 143
                 778888899999999999999988..9999******98888773333 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 6.7e-06
                 EEEEEEEEE.CC.GGTTTEEEEEEE--T..THHCCHHHHHCHHCCCCHCCT.EEEEEECCCSS-TTTTTSBTTSBB.TTEEETTCCCCCCHCHHHHTHH CS
    Esterase   6 reikvqvyLPedyspgrkypvvylldGl..tgwdqnfrakelleslaregeiaeviivvvprggessfysdwdlgarfyenategpgaeayetfltqeL 102
                 ++i+ +++ P+++s++++yp+ yl +G     w +++ +       a++     v+i   p g +s        g++f ++ ++  g + ye+ ++   
  KKY15475.1 447 QPIHAWMMKPSNFSSEKRYPLAYLIHGGpqGAWLDSWGTRWNPAVFAEQ---GYVVICPNPTGSTS-------YGKKFTDDIQNSWGGKPYEDLVKG-- 533
                 68999**********************8887777777765444333444...45666667777777.......45789999999999999**99988.. PP

                 HHHHHHHCSEECCC.EEEEEETHHHHHHHHHHHC.STTTCCEEEEES--S-CC................HCHHHC..TTCCHHH CS
    Esterase 103 lplldanfrtapdg.ravaGqSmGGlgALilalk.hpdrFgsvssfSpivnps................namWgq..eekeawq 166
                   ++++++ + ++  + +aG+S GG++  ++  +    rF+   ++ ++ + +                 ++W +  e+ ++w 
  KKY15475.1 534 IEYIESSLAFVDKDrMIAAGASYGGYMVNWIQGHeLGRRFKALVCHDGVFSMTgqlaseeqyfplhdlkGPIW-EvpENYAQWD 616
                 899***9998888768889*******99888766578899999999999888888888888888877743334.3344444444 PP

>> Peptidase_S28  Serine carboxypeptidase S28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   6.6e-05      0.24      94     131 ..     528     565 ..     507     567 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 6.6e-05
  Peptidase_S28  94 aDlasfikalkqkfklsssskwitfGgSYsgsLaawar 131
                    +Dl++ i+ +++ +   ++ ++i+ G+SY+g ++ w++
     KKY15475.1 528 EDLVKGIEYIESSLAFVDKDRMIAAGASYGGYMVNWIQ 565
                    7999********************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.54
# Mc/sec: 4144.96
//
Query:       KKY15476.1  [L=631]
Description: putative hlh transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-14   52.5   0.2    7.7e-14   51.4   0.2    1.6  1  HLH       Helix-loop-helix DNA-binding domain


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.2   4.3e-18   7.7e-14       1      53 []     516     593 ..     516     593 .. 0.99

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 4.3e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHCST.........................CSTTSS-STHHHHHHHHHHHHHHHH CS
         HLH   1 rraahnerErrRRdriNsaleeLrellP.........................slppskKlsKaeiLekAveYIkhLq 53 
                 +r++h+++E+ RR+riN+al+e   llP                         ++ ++++ sKa ++e+A+ YI++Lq
  KKY15476.1 516 KRTSHKIAEQGRRNRINTALKEIEGLLPptptllamskknslaipeeesaekgTGSSNQPTSKANTVEMAILYIRSLQ 593
                 79***************************************************999*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       820  (0.045736); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.51
# Mc/sec: 3701.19
//
Query:       KKY15477.1  [L=700]
Description: putative atp-dependent molecular chaperone hsc82 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.1e-222  739.1  35.9     4e-222  738.7  35.9    1.1  1  HSP90           Hsp90 protein
    1.8e-15   57.4   0.1    3.3e-15   56.6   0.1    1.5  1  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l
    1.9e-10   40.7   0.2    1.9e-10   40.7   0.2    2.3  3  HATPase_c_3     Histidine kinase-, DNA gyrase B-, and HSP90-l
  ------ inclusion threshold ------
      0.045   13.8   0.5       0.24   11.4   0.2    2.4  2  LOH1CR12        Tumour suppressor protein
        1.2    9.2   6.0        0.9    9.6   0.5    2.7  2  DUF1676         Protein of unknown function (DUF1676)


Domain annotation for each model (and alignments):
>> HSP90  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  738.7  35.9  1.1e-225    4e-222       1     509 [.     182     688 ..     182     697 .. 0.95

  Alignments for each domain:
  == domain 1  score: 738.7 bits;  conditional E-value: 1.1e-225
                 GGGSHHHHHHHHHHCCTTSSS-EEEEEEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXEEEEEEESXXSXGGGSXGGGSXH CS
       HSP90   1 eyleekklkelvkkySeFinfpiyllkekeeekeveeeeeeeeeeeeeeeeeakveeeeeeeee..kkktkkvketvkewellNkqkpiWlrkpkevte 97 
                 +yl+e k+ke+vkk+SeFi++piyl++ ke+ekev++e++ee+ee+  ee++ak+ee++++eee  +kktkkvke + e+e+lNk+kpiW+r+p+++t+
  KKY15477.1 182 DYLNEAKIKEVVKKHSEFISYPIYLHVLKETEKEVPDEDAEEAEED--EEKKAKIEEVDDDEEEkkEKKTKKVKESKIEEEELNKTKPIWTRNPSDITQ 278
                 7***********************************9988777654..6778888877777666569999***************************** PP

                 HHHHHHHHHTTTTTSXXSEEEEEEEXSSSXEEEEEEEXSSXXTTTTTTTTTSXXTTEEEEETTEEEESXXTTSSXGGGTTXEEEEEESSSXSSSTHHHH CS
       HSP90  98 eeYkeFYkslskdsedplavkhfsaegevefkaiLfvPkrapsdlfekykkkkknnikLYvrrVfitdefedllPkyLsFvkGvvdsddLPLNvsREtl 196
                 eeY++FYksls+d+ed+lavkhfs+eg++ef+aiLfvPkrap+dlfe+  kk+knnikLYvrrVfitd+++dl+P++LsF+kGvvds+dLPLN+sREtl
  KKY15477.1 279 EEYASFYKSLSNDWEDHLAVKHFSVEGQLEFRAILFVPKRAPFDLFET--KKTKNNIKLYVRRVFITDDATDLIPEWLSFIKGVVDSEDLPLNLSRETL 375
                 ***********************************************8..799********************************************** PP

                 HTCHHHHHHHHHHHHHHHHHHHTSXHHH..HHTHHHHHHHHHHHHHHHXGGGHHHHHTTXEEEETTEEEEEEEHHHHHHHSXTTXXEEEEEEXSSHHHH CS
       HSP90 197 qqnkilkvikkklvrKvlemlkklaeekeeykkfykefsknlklGiiedsanrkklakLlrfksskseeeltsLedYvermkekqksiYyiageskeev 295
                 qqnki+kvikk++v+K+le+++++ae++e+++kfy++fskn+klGi+eds+nr+ lakLlrf+s+ks++e+tsL+dYv+rm+e+qk++Yyi+ges ++v
  KKY15477.1 376 QQNKIMKVIKKNIVKKTLELFNEIAEDREQFDKFYSAFSKNIKLGIHEDSQNRQSLAKLLRFSSTKSGDETTSLADYVTRMQEHQKQMYYITGESLKAV 474
                 *************************************************************************************************** PP

                 HTSGGGHHHHHTTXXEEEEXSTTHHHHHHTXSEETTEEEEETTBSTXXXXXXHHHHHHHHHHHHHHHHHHHHHHHTTTTTESEEEEXSSXSSXSEEEEB CS
       HSP90 296 ekspflerlkkkgyevlylvdpiDeyvvqqlkeyegkklvnvakegleleeeeeekkkkeelkkkfeeltkllkevlkdkvekvkvserlvdsPcvlvt 394
                 +kspfl++lk+k++evl+lvdpiDey+++qlke++gkklv+++k+ +elee+eeekk++e+++k++eel+k lk+vl+dkvekv+vs++l  sPc++ t
  KKY15477.1 475 QKSPFLDSLKQKDFEVLFLVDPIDEYAMTQLKEFDGKKLVDITKD-FELEETEEEKKEREAEEKEYEELAKSLKNVLGDKVEKVVVSHKLIGSPCAIRT 572
                 ********************************************7.9**************************************************** PP

                 XTTSXXHHHHHHHHHHHHHHHSSTSSSSSXEEEEEXTTSHHHHHHHHHHHHTTT.XHHHHHHHHHHHHHHHHHTTXXXSXHHHHHHHHHHHHTTTTHXX CS
       HSP90 395 seygwsanmerimkaqalrdkskssymsskktleinprhpiikeLkkkveedke.deeakdlaellyetallesGfsledpasfakrierllklslgid 492
                 +++gwsanmerimkaqalrd+s+ssymsskkt+ei p+ piikeLkkkve+d e d+++k++++ll+et+ll sGf++e+pa fa+ri++l++l+l++d
  KKY15477.1 573 GQFGWSANMERIMKAQALRDTSMSSYMSSKKTFEISPKSPIIKELKKKVEADGEnDRTVKSITQLLFETSLLVSGFTIEEPAGFAERIHKLVSLGLNVD 671
                 **************************************************9854389*****************************************8 PP

                 STTTTTTGGGXGGGXXX CS
       HSP90 493 edeeveeeeeveeeeee 509
                 ed+e+++e+++e+++ +
  KKY15477.1 672 EDAETSDEKAEEDAAPA 688
                 88777776665544333 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.1   9.2e-19   3.3e-15       1     111 [.      26     179 ..      26     180 .. 0.80

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 9.2e-19
                 EHHHHHHHHHHHHHHHHHHH..........HSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT.......GTCS.TTCH.....HCSTCHTSTSSSH CS
   HATPase_c   1 gdekrLrqiisnlvdNavkf..........atkageieveikaseddlvisveDnGiGipkedlk.......klfe.kfsq.....ddstkrggggtGl 76 
                 ++e++Lr++isn++d+++k+            +++++++ i +++++++++++D+GiG++k+dl        ++++  f++     +d +++g++g+G+
  KKY15477.1  26 NKEIFLRELISNASDALDKIryealsdpskLDSGKDLRIDIIPDKENKTLTIQDTGIGMTKADLVnnlgtiaRSGTkQFMEaltagADISMIGQFGVGF 124
                 5899****************99988877532267799999998889**************************999999999998566666666666665 PP

                 .HHHHH.............HH.HHH.HTTTEEEEEEET....TTEEEEEEEEESS CS
   HATPase_c  77 .Glsiv.............kk.lve.lmgGeiwvesep....grGttftftlple 111
                  ++++v             ++  +e   gG+++++++     grGt+++++l++e
  KKY15477.1 125 ySAYLVadkvtvtsknnddEQyTWEsSAGGTFTLTQDVgeplGRGTRIVLHLKEE 179
                 54444477777776666664446665699*99997776777999********997 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.2   5.3e-14   1.9e-10       1      99 [.      24     145 ..      24     153 .. 0.82
   2 ?   -4.3   1.2       4.1   1.5e+04     110     122 ..     243     255 ..     223     266 .. 0.44
   3 ?   -2.8   0.1       1.4     5e+03      83     119 ..     430     466 ..     428     477 .. 0.63

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 5.3e-14
  HATPase_c_3   1 ysl.ekAlaelvdNsldAdaen..................vkievnknrgktgeivieDdGkGmseeelknal.rlatsskeakr.......kstslG 71 
                  ys+ e+ l el+ N+ dA  +                   ++i  +k+   +++++i+D G Gm++++l n l ++a+s +++         +   +G
   KKY15477.1  24 YSNkEIFLRELISNASDALDKIryealsdpskldsgkdlrIDIIPDKE---NKTLTIQDTGIGMTKADLVNNLgTIARSGTKQFMealtagaDISMIG 118
                  566688899*********88778999************7777777775...58******************7747999988855434444335666** PP

  HATPase_c_3  72 kkGiGlklAslslgkkltvitkkegess 99 
                  ++G+G + ++  +++k+tv++k++++++
   KKY15477.1 119 QFGVG-FYSAYLVADKVTVTSKNNDDEQ 145
                  *****.999999*********9987654 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 4.1
  HATPase_c_3 110 kenekvleeltve 122
                  +++ek+ ++++++
   KKY15477.1 243 EKKEKKTKKVKES 255
                  2223333333333 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.4
  HATPase_c_3  83 slgkkltvitkkegesstltldvdkidkenekvleel 119
                  sl+k l   ++k+g+++t   d+    +e++k++  +
   KKY15477.1 430 SLAKLLRFSSTKSGDETTSLADYVTRMQEHQKQMYYI 466
                  5677888888888888876666655555555544444 PP

>> LOH1CR12  Tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   6.7e-05      0.24      48      89 ..     374     416 ..     364     432 .. 0.85
   2 ?   -2.3   0.0       1.1   4.1e+03      32      42 ..     452     462 ..     445     474 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.7e-05
    LOH1CR12  48 Aadqaklverik.evdakiitllaelrekqkqyasyaealskv 89 
                   +q+k+++ ik ++ +k  +l++e+ e ++q++++  a+sk 
  KKY15477.1 374 TLQQNKIMKVIKkNIVKKTLELFNEIAEDREQFDKFYSAFSKN 416
                 568******99736899999********************984 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.1
    LOH1CR12  32 lctRlqeHlav 42 
                   tR+qeH ++
  KKY15477.1 452 YVTRMQEHQKQ 462
                 56888888654 PP

>> DUF1676  Protein of unknown function (DUF1676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.7       0.1   3.6e+02     102     120 ..     217     251 ..     127     258 .. 0.52
   2 ?    9.6   0.5   0.00025       0.9      22      83 ..     508     563 ..     497     566 .. 0.60

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.1
     DUF1676 102 rsleedne................egRkkkkkkkk 120
                 +++++++                 e  kk kk kk
  KKY15477.1 217 PDEDAEEAeedeekkakieevdddEEEKKEKKTKK 251
                 22222222222222233322334322223334444 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00025
     DUF1676  22 lldkdeielvdgvslvrneeaasasskeeeeelsreeeeare...eelekllleklerflkshsl 83 
                 +  k+ ++++ + +l  +ee++      +e+e++++e    e   ++l++ l +k+e+++ sh+l
  KKY15477.1 508 FDGKKLVDITKDFELEETEEEK------KEREAEEKEY---EelaKSLKNVLGDKVEKVVVSHKL 563
                 4444445555555555544442......2222223333...23459*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2356  (0.131407); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.94u 0.39s 00:00:01.33 Elapsed: 00:00:00.56
# Mc/sec: 3748.68
//
Query:       KKY15478.1  [L=208]
Description: hypothetical protein UCRPC4_g06345 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.52
# Mc/sec: 1203.92
//
Query:       KKY15479.1  [L=154]
Description: putative dutpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-45  151.9   0.0    7.6e-45  151.8   0.0    1.0  1  dUTPase   dUTPase
  ------ inclusion threshold ------
      0.027   13.3   0.0      0.034   12.9   0.0    1.1  1  DCD       2'-deoxycytidine 5'-triphosphate deaminase (DCD)


Domain annotation for each model (and alignments):
>> dUTPase  dUTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.8   0.0   8.4e-49   7.6e-45       3     129 .]      26     153 ..      24     153 .. 0.99

  Alignments for each domain:
  == domain 1  score: 151.8 bits;  conditional E-value: 8.4e-49
                 CTBEBESSTT-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEE.EEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEE CS
     dUTPase   3 aeiptrkspesAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvp.gvidsdyrGevkvvlfnltkkdvkikkgdRiAqLi 100
                 a++ptr+s+ +AgyD+++a d++++ +++ lv td++i++p+g++++i+pRSgla k++i+++ gvid+dyrG+vkv lfn+ ++d++ik+gdRiAqL+
  KKY15479.1  26 AQAPTRGSDFAAGYDIYSAHDTVIPGRGKALVDTDLAIAVPEGTYGRIAPRSGLASKHFIDTGaGVIDADYRGQVKVLLFNHAEADFQIKQGDRIAQLV 124
                 789************************************************************************************************ PP

                 EEEBECGEEEEESSTTTESSBTTXTTTTX CS
     dUTPase 101 fariltaeleevetlkatergeggfgssg 129
                 ++ri t+ +  ve+l+++ rg ggfgs+g
  KKY15479.1 125 LERIYTPDVVVVEELEESVRGAGGFGSTG 153
                 **************************997 PP

>> DCD  2'-deoxycytidine 5'-triphosphate deaminase (DCD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.8e-06     0.034     289     335 ..      84     130 ..      72     142 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.8e-06
         DCD 289 ffDpGFGlaeaggegsravLevRsrevPFiledgqivgrlvyermae 335
                 f+D+G G+ +a+ +g   vL     e+ F +++g  +++lv+er+ +
  KKY15479.1  84 FIDTGAGVIDADYRGQVKVLLFNHAEADFQIKQGDRIAQLVLERIYT 130
                 99*****************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1047.96
//
Query:       KKY15480.1  [L=215]
Description: putative phosphotransferase enzyme family domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-13   51.8   0.2    1.7e-13   51.0   0.2    1.3  1  APH       Phosphotransferase enzyme family
     0.0063   15.9   0.1     0.0088   15.4   0.1    1.2  1  EcKinase  Ecdysteroid kinase
  ------ inclusion threshold ------
      0.048   14.3   0.2      0.068   13.8   0.2    1.2  1  Pex14_N   Peroxisomal membrane anchor protein (Pex14p) conser


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.2   2.9e-17   1.7e-13     160     209 ..      11      59 ..       5      70 .. 0.89

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 2.9e-17
                 --SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCH CS
         APH 160 lpgelptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavll 209
                  p+ ++++l+HgD++ +Nl+++p+ ++v+G++D+e+a++g+pl+Dl+ l 
  KKY15480.1  11 QPR-DRACLMHGDYKIDNLVFHPTLPQVIGILDWELATIGHPLADLVNLT 59 
                 453.89****************************************9875 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.5e-06    0.0088     207     259 ..       8      57 ..       1      59 [. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.5e-06
    EcKinase 207 veekeeefnvlnHGDlwvnNimfkydeegepedvilvDFQlsrygSpalDLly 259
                 +++++ + + l+HGD+ + N+ f+ +    p+ + ++D+ l+ +g p  DL+ 
  KKY15480.1   8 ATHQPRDRACLMHGDYKIDNLVFHPT---LPQVIGILDWELATIGHPLADLVN 57 
                 4478888999*************875...799999****************85 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   1.1e-05     0.068      69     139 ..      76     147 ..      59     159 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.1e-05
     Pex14_N  69 esasssatpqpqaasqtsqsspsps.ppaqqqqqqy....rpPivtypefltkppkppppPlrtwrdllitatala 139
                 +++++s++++p ++s++s+ss+s+s  p + +++++     p+i+ +   +++++   p P+++w + +  + +++
  KKY15480.1  76 NNNNNSTNAPPYSSSSSSSSSSSSStDPFH-PTRTAglptLPQIQSW---YATSSGYDPSPEMQWGNCFGGLRGAV 147
                 333344444444444444433333322222.2222244445555555...78899999*******99987665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1433.35
//
Query:       KKY15481.1  [L=588]
Description: hypothetical protein UCRPC4_g06348 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-51  175.1   0.3      4e-51  174.0   0.0    1.6  2  Vezatin   Mysoin-binding motif of peroxisomes
  ------ inclusion threshold ------
       0.11   12.5   0.0       0.27   11.3   0.0    1.6  1  UPF0697   Uncharacterised protein family UPF0697


Domain annotation for each model (and alignments):
>> Vezatin  Mysoin-binding motif of peroxisomes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.0   0.0   4.5e-55     4e-51      20     278 ..     125     402 ..     109     403 .. 0.90
   2 ?   -2.5   0.4      0.29   2.6e+03     220     242 ..     546     568 ..     522     585 .. 0.52

  Alignments for each domain:
  == domain 1  score: 174.0 bits;  conditional E-value: 4.5e-55
     Vezatin  20 slvkgfkllliisvklikvlvlwrrqrlqvirqkalnqleefvknsqaldklvrkaLiliqEvelisrgyrlssplpPisrledqsqsrrcagLrkaly 118
                  +  g +++l++++++++ ++++r ++ + ir+  +  l++++++sqa+d ++ ++L++iqEve++srgy + splpPisr+e++ q+rrc +Lr+ ++
  KKY15481.1 125 LWLTGSRIILLVILVALGIFAYSRWKYAKEIRHNSIQSLRDLIASSQAFDITIAASLNFIQEVEIVSRGYDITSPLPPISRIEEKTQQRRCLKLRREVA 223
                 3344555666666666777******************************************************************************** PP

     Vezatin 119 stlsalflnlrkailkLlplsegdnlekYcdiynikelglseeslsdeeaeeetdeesLdaLkflfqkfnqlrkeflcqLLaLlsdsskenffrwklah 217
                 ++ls l++++ + + +   ++ ++ +e+Y+diy+i+  +++e  + +++    +d e L++Lk+ f+k+   rk+ lc+LLa+ s + +++ + w +a 
  KKY15481.1 224 NYLSELSQQYIEIHRAFSRYAPEEVVEQYHDIYDISRRDFQEV-GLLSPQPLASDPEALKTLKVTFAKHFVARKVILCDLLAFSSHQENDEPEKWHVA- 320
                 ****************************************999.7888889999********************************************. PP

     Vezatin 218 eilsellqsLshvlaecleeLhrifeteese.........................ltperreraraklrkLnsLstlirsLqlhl 278
                    +  ++ L   +a+++e++  +++ e+ +                          +p ++   r ++++L sLs+++r+L ++l
  KKY15481.1 321 ---IGETSTLAKSIASMTEKINVLLQSEQGPplpdseprpqpedapglgispgrhtPDP-ENDANRLQVSRLISLSQGVRTLGAKL 402
                 ...******************88888888889999999999999*********963333.44556778*************98776 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.29
     Vezatin 220 lsellqsLshvlaecleeLhrif 242
                   +l+q+ + +++++l eL++++
  KKY15481.1 546 QRALNQEKQEASTNMLRELETVI 568
                 23333444444444444444444 PP

>> UPF0697  Uncharacterised protein family UPF0697
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.1e-05      0.27      13      82 ..     126     195 ..     122     200 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.1e-05
     UPF0697  13 wneatnvyllvilvslglllyarknkrkilriftvppaaesaseanfydslkkirlrqqlemysiarkyd 82 
                 w   + + llvilv+lg++ y+r +  k +r  ++    +  + ++ +d      l    e+  ++r yd
  KKY15481.1 126 WLTGSRIILLVILVALGIFAYSRWKYAKEIRHNSIQSLRDLIASSQAFDITIAASLNFIQEVEIVSRGYD 195
                 66677899***************99999999999988888877777777766666666666666777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       997  (0.0556082); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3865.45
//
Query:       KKY15482.1  [L=489]
Description: putative mfs transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-37  129.1  20.7    2.2e-37  128.8  20.7    1.1  1  MFS_1     Major Facilitator Superfamily
     0.0013   18.5   3.2     0.0013   18.5   3.2    2.5  2  UNC-93    Ion channel regulatory protein UNC-93


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.8  20.7   2.5e-41   2.2e-37       1     352 [.      56     421 ..      56     422 .. 0.88

  Alignments for each domain:
  == domain 1  score: 128.8 bits;  conditional E-value: 2.5e-41
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslw.lllvlrvlqGl 97 
                 ++l+++  +l+rs++g +    + ed g++  ++++++++++++++ +  p++ l  ++ +r  +  l++++++++ ++  f ++ +  l++ r++ G+
  KKY15482.1  56 IMLVYLSCFLDRSNIGNVKVAGMPEDIGANTNQYNTAVSIFYATYVTFETPFAILLKKLTPRLlLSSLCVVWSLVT-IFTGF-IQTPgGLYATRLILGA 152
                 578999999*****9999999******************************************5555555555555.55558.88898*********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee.. 188
                 ++++lfp+ + +++ ++ +ee+++ +++l ++++l+ ++g ll+ ++++  g      Wr+v++i +++s++  +++++ lp++p e++  +p+++e  
  KKY15482.1 153 CEAGLFPGLNLYLTMVYRREEQAKRVAYLFSCAALSGAFGGLLAYAILQMDGvagyagWRWVYIIEGLFSIVITLVVWFGLPTNPAESWFLTPEQKEmm 251
                 *********************************************8887777888888*****************999999****************** PP

       MFS_1 189 ..........kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrl 277
                            g+ ++ +++  k+ ++dp l++  ++ ++  + ++g++t+lp +  +  g++  l++ +l   ++++ga  + l+++lsdr+    r 
  KKY15482.1 252 rirqaqtrlyMGKDKFDWRE-VKIAFRDPKLYLSGCIQFCQDILLYGFSTFLPAI-LKGSGYD-SLQSNYLTIPVYIFGALTFYLFAYLSDRFLY--RS 345
                 ********************.********885455555555667777*******7.*******.799999999999999999**********877..77 PP

       MFS_1 278 llallllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggalg 352
                  + l++ l++ +g+++l + + + + +++ +l+ +  +    + l  l +++ap  +++t++g+ +t+g+ +g+++
  KKY15482.1 346 PFLLFANLFGIIGYIILLTVDRNGVKYFATFLVAIaVYNGPGCNLVWLNVNVAPHYRRATVIGFQQTMGNSAGIVA 421
                 8888888888888888888888999999889988855555566666666666788999************999987 PP

>> UNC-93  Ion channel regulatory protein UNC-93
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   3.2   1.5e-07    0.0013      41     151 ..      91     202 ..      53     208 .. 0.79
   2 ?   -3.5   3.4      0.81   7.3e+03      81     105 ..     389     413 ..     305     465 .. 0.60

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.5e-07
      UNC-93  41 yslaiiyavftvanlvapsvvdlltakwalvigallyaif..qlgFlllnkyylyissallGvgaallwtgqGsyLsenstretiernssilwallkss 137
                 ++++i ya+++++    + ++++lt++++l    ++++++    gF+++    ly++  +lG+  a l+ g   yL+   +re+  + ++ l++    s
  KKY15482.1  91 TAVSIFYATYVTFETPFAILLKKLTPRLLLSSLCVVWSLVtiFTGFIQT-PGGLYATRLILGACEAGLFPGLNLYLTMVYRREEQAKRVAYLFSCAALS 188
                 578899*********************9765444444433113588887.5679********************************************* PP

      UNC-93 138 lliGgiflilvfql 151
                   +Gg++ + + q 
  KKY15482.1 189 GAFGGLLAYAILQM 202
                 *****999988776 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.81
      UNC-93  81 qlgFlllnkyylyissallGvgaal 105
                 +l++l +n +  y  ++++G+  ++
  KKY15482.1 389 NLVWLNVNVAPHYRRATVIGFQQTM 413
                 3445555555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.51
# Mc/sec: 2904.61
//
Query:       KKY15483.1  [L=378]
Description: putative c6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-10   39.3   0.2    1.7e-09   37.1   0.1    2.0  1  Fungal_trans  Fungal specific transcription factor domain
  ------ inclusion threshold ------
      0.076   12.8   0.0       0.14   11.9   0.0    1.4  1  B12D          NADH-ubiquinone reductase complex 1 MLRQ subuni


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.1   1.9e-13   1.7e-09     106     166 ..       3      57 ..       1     116 [. 0.93

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 1.9e-13
  Fungal_trans 106 tssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDkti 166
                   ++ +r+++ +++gva+r+a slgLh++  + +       ++ e+e rrR+ww+++  D+ +
    KKY15483.1   3 NLNRRDAAFLYIGVALRMAISLGLHQEVTDPE------IDVVEREHRRRVWWSVYNADISV 57 
                   6788999*************************......*****************999865 PP

>> B12D  NADH-ubiquinone reductase complex 1 MLRQ subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.6e-05      0.14       9      51 ..      11      54 ..      10      58 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.6e-05
        B12D  9 fvfigagvggavfylvRllltnPDVr.wnkknnpepWnklknnk 51
                f+ ig+++ +a+  ++++ +t+P++  + ++++ + W+ ++n +
  KKY15483.1 11 FLYIGVALRMAISLGLHQEVTDPEIDvVEREHRRRVWWSVYNAD 54
                678**********************869************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 2363.48
//
Query:       KKY15484.1  [L=298]
Description: hypothetical protein UCRPC4_g06351 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-54  181.3   0.0    1.4e-53  180.7   0.0    1.3  1  DUF1445   Protein of unknown function (DUF1445)


Domain annotation for each model (and alignments):
>> DUF1445  Protein of unknown function (DUF1445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.7   0.0   7.7e-58   1.4e-53       1     136 [.     125     279 ..     125     285 .. 0.97

  Alignments for each domain:
  == domain 1  score: 180.7 bits;  conditional E-value: 7.7e-58
     DUF1445   1 VaFliGcSfsfeeaLleaglpvrhveqgrnvpmYktniplapagvfsgk.lvvsmrpikkekvervveitrrfkkvhgePvhigdp..ealgikdlskp 96 
                 ++FliGcSfsfe+aLl+++lp+ h+ ++r+vpmY+tnipl+pagvf+++ +vvsmr+++k+++e+v+eit+++ ++hgeP+++g++  e++g+kd+++p
  KKY15484.1 125 IGFLIGCSFSFETALLASNLPPAHILHNRTVPMYRTNIPLCPAGVFTNStYVVSMRMYRKSQLEAVREITKPYLATHGEPIAWGWDgaERIGVKDIAEP 223
                 68*********************************************999*************************************9*********** PP

     DUF1445  97 dyGdaveieeg...............evPvFWacgvtpqeavmsakl.elvithap 136
                 d+Gd++++  g                +P+FW+cgvtpqeavm+a+l ++++ h  
  KKY15484.1 224 DWGDPPVTVSGeiaahqkpndpnkdsWIPMFWGCGVTPQEAVMRAELkGTIMGHVS 279
                 *******99999*************99********************999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.53
# Mc/sec: 1682.36
//
Query:       KKY15485.1  [L=348]
Description: putative glycoside hydrolase family 5 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-46  158.7   0.0    2.6e-46  158.3   0.0    1.1  1  Cellulase  Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.3   0.0   1.4e-50   2.6e-46      25     277 ..      58     305 ..      31     310 .. 0.88

  Alignments for each domain:
  == domain 1  score: 158.3 bits;  conditional E-value: 1.4e-50
                 HHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESSTTTCSSSSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTE CS
   Cellulase  25 alidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildiHseegwltkadgnssedtaeeffkklwtqiAerykkndevv 123
                 ++++  ++ ++n++Rlpvsw+ lv+n+ +++ d +++++++++v+ + + g+++i+diH++++w  +++  ++   ++e+f+ lw q+A +y  n++++
  KKY15485.1  58 QMAHFTAADNMNMFRLPVSWQFLVNNNLGGTLDTTNFAQYDDLVQSCLATGAHCIIDIHNYARW--NGTIIGQGGPTDEQFAGLWSQLAIHY-VNESNM 153
                 899999**********************************************************..**************************.9***** PP

                 EEESSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTTS.SEEEEECHHHHT......BHHHHHCT...SGSSSSTTEEEEEEEETTTHHHTGCGS CS
   Cellulase 124 ifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgpn.rliivegnswsg......nldgavln...dPndsqdnliysvHfYgpsdfaqtefg 212
                 +f +mNEPh+  +         +++++++++a++aIR +g++ +++++ gn++++      + ++a+l+   + +  + nli++vH+Y +sd ++t++ 
  KKY15485.1 154 VFGIMNEPHDIPNI--------KTWAQTVQAAVTAIRRAGATtQMCLLSGNNYTSagsfvsSGSAAALStvtNLDGTTTNLIFDVHKYFDSDNSGTHA- 243
                 **********6665........556***************************99866665533333333332224579********************. PP

                 HSCTHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTSSHHHHHHHHHHHHHHHHTTTEEEEEEE CS
   Cellulase 213 kdltdktnlaqrledaakylvekgipviigEfGgsnadgdlakeeaekwldylkekgiswiyWsl 277
                  ++++   +   ++ +akyl+ ++  +i++EfGg+ ++  ++ ++ ++ l +l++++ +++++  
  KKY15485.1 244 -TCVSD-QISAAFSPLAKYLRANNRMAILSEFGGGANET-SCLKHICSALMFLDRNSDVYLGYVG 305
                 .55554.55889*********************986665.8************999888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2451.82
//
Query:       KKY15486.1  [L=109]
Description: putative 60s ribosomal protein l33 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-44  150.6   0.4    1.2e-44  150.4   0.4    1.0  1  Ribosomal_L35Ae  Ribosomal protein L35Ae
    6.3e-05   23.1   0.0       0.12   12.6   0.0    2.2  2  RimM             RimM N-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L35Ae  Ribosomal protein L35Ae
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.4   0.4   1.3e-48   1.2e-44       1      95 []       9     103 ..       9     103 .. 0.99

  Alignments for each domain:
  == domain 1  score: 150.4 bits;  conditional E-value: 1.3e-48
                      -EEEEEEEEEE--SSSSS-EEEEEEESS--SHHHHHCCTT-EE..EEE-......TTT-EEEEEEEEECTTTTEEEEEETT--SSS-TT-EEEE CS
  Ribosomal_L35Ae   1 LyvkavflgykrgkrnqrentaLlkiegvkskeeaefylGkrvayvykakkkkkgskvrviwGkvtrahGnsgvvrakFkknLppkaigarvrv 94 
                      Lyvk+++l+y+rgkrn+++nt+Llk+egv+++  a+fylGk+va+vy+a+k+++gsk+rviwGkvtr+hGn+gvvrakF++nLppk++ga+vrv
       KKY15486.1   9 LYVKGKHLSYQRGKRNTNPNTSLLKLEGVDDTRAAQFYLGKKVAFVYRASKERQGSKIRVIWGKVTRPHGNNGVVRAKFRHNLPPKSFGATVRV 102
                      8********************************************************************************************* PP

                      . CS
  Ribosomal_L35Ae  95 m 95 
                      m
       KKY15486.1 103 M 103
                      9 PP

>> RimM  RimM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   1.3e-05      0.12      45      78 ..      16      51 ..       4      58 .. 0.76
   2 !    8.8   0.0   0.00021       1.8       2      20 ..      70      88 ..      69     107 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.3e-05
                E-EEEEEEE..TTEEEEEETT--SHHHHHTTTT-EE CS
        RimM 45 ltvesvrvh..kkgvivklegvddrdaAealkgael 78
                l+ ++++ +   ++ ++klegvdd  aA+ + g ++
  KKY15486.1 16 LSYQRGKRNtnPNTSLLKLEGVDDTRAAQFYLGKKV 51
                5566666545699***************99999887 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00021
                EEEEEEEETTTTEEEEEE- CS
        RimM  2 vGkIvgahGlkGevkVkpf 20
                 Gk++++hG +G v+ k  
  KKY15486.1 70 WGKVTRPHGNNGVVRAKFR 88
                59************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.48
# Mc/sec: 684.05
//
Query:       KKY15487.1  [L=512]
Description: putative glucose-6-phosphate 1-dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-115  385.6   0.0   2.9e-115  384.5   0.0    1.5  2  G6PD_C    Glucose-6-phosphate dehydrogenase, C-terminal domai
    1.3e-61  208.4   0.1      2e-61  207.7   0.1    1.3  1  G6PD_N    Glucose-6-phosphate dehydrogenase, NAD binding doma
  ------ inclusion threshold ------
      0.059   13.4   0.3       0.12   12.4   0.3    1.4  1  ArAE_1_C  Putative aromatic acid exporter C-terminal domain


Domain annotation for each model (and alignments):
>> G6PD_C  Glucose-6-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1      0.44   2.6e+03      95     119 ..      99     123 ..      78     136 .. 0.64
   2 !  384.5   0.0  4.8e-119  2.9e-115       1     289 [.     206     494 ..     206     501 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.44
                 .EEEEEE.....E--TGS-STTSTT CS
      G6PD_C  95 kvvrGqYaagavkgkevkgYreeeg 119
                 + v GqY ++++ ++ +k  +e e+
  KKY15487.1  99 TYVSGQYDQDESFQELEKHLQELEK 123
                 3688999777665555555555444 PP

  == domain 2  score: 384.5 bits;  conditional E-value: 4.8e-119
                 HHHHHS-STTSTTSSTTTEEEEEEEEEESS--TTTHHHHTTTHHHHHTTTTHHHHHHHHHH----SSSSHHHHHHHHHHHHTTB----G...GG.EEEE CS
      G6PD_C   1 lvlRfaNalfeplwnrnyidhvqitvketlgvegrggYydeaGalrDvvqnHllqllalvamepPasldaedirdekvkvLkslrplkleevekkvvrG 99 
                 l+lRf+N++f ++wnrn+id+vqi++ke++g+egrggY+de+G++rDv+qnHllq+l+l+ame+P+s++aedirdekv+vL+ +  +++    k+v++G
  KKY15487.1 206 LILRFGNEFFGATWNRNHIDNVQISFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQVLTLLAMERPISFSAEDIRDEKVRVLRGIPAIEP----KNVIIG 300
                 589*************************************************************************************9....459*** PP

                 EE.....E--TGS-STTSTTS-TT----SEEEEEEEB-STTTTT-EEEEEEESSBSS-EEEEEEEE---SS-SS---.--EEEEEEESS-EEEEEEEEE CS
      G6PD_C 100 qYaagavkgkevkgYreeegvakdSkteTfvalkleidnerwagVPfylrtGKrLnekkteiriqfkkvpsdlfkkkerneLviriqpdeaislklnak 198
                 qY  g + + ++++Y+e+++v+kdS+++Tf+a++l+i+nerw+gVPf+l++GK+Lne+kte+riqfk+v+s +fk+  rneLvir+qp+e++++k+n+k
  KKY15487.1 301 QY--GRSLDGTKPAYKEDDTVPKDSRCPTFCAMTLFIKNERWDGVPFILKAGKALNEQKTEVRIQFKDVTSGIFKDIPRNELVIRVQPNESVYIKMNSK 397
                 **..88888999**************************************************************6666********************* PP

                 -SSSE.....EEEEEEHHHHTT...---HHHHHHHHHHHT-GTTSB-HHHHHHHHHHHHHHHHHHHH...---EEEETTSSS-HHHHHHHHHHTX.X CS
      G6PD_C 199 kpgleleleeveldlsykerfk...lpeaYerLlldvlkgdqtlFvrsdeveaaWkivdpileawee...eklekYeagsrgPeeadellekdgrkw 289
                  pgl++++  +eldl+y++rf+   +peaYe+L+ld+lkgd+++Fvr+de++a+W+i++p+l++++e     +++Y++gsrgP+  d++ +++g+k+
  KKY15487.1 398 LPGLSMQTVVTELDLTYRRRFSdlkIPEAYESLILDCLKGDHSQFVRADELDASWRIFTPLLHYLDEkkeIVPMEYPYGSRGPSVLDDFTQSYGYKF 494
                 *******************999999****************************************999886699******************99886 PP

>> G6PD_N  Glucose-6-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.7   0.1   3.3e-65     2e-61       1     177 []      27     204 ..      27     204 .. 0.94

  Alignments for each domain:
  == domain 1  score: 207.7 bits;  conditional E-value: 3.3e-65
      G6PD_N   1 vifGasGdLakrkllPaLyelaregllpeevrivgvarsklsdeefrekvkealkkekekeeldeekleeflkrleyvsgdleeeeeyekLkekleele 99 
                 v++GasGdLak+k++PaL+ l+r+++lp+ ++ivg+ar+k++++e+ ++v++++k+ ++     ee+l++f++ ++yvsg+++++e++++L+++l+ele
  KKY15487.1  27 VVLGASGDLAKKKTFPALFGLFRNKFLPNGIKIVGYARTKMDHQEYLKRVRSYIKTPTK---EVEEQLNQFCELCTYVSGQYDQDESFQELEKHLQELE 122
                 89****************************************************65442...3579*******************************99 PP

      G6PD_N 100 .....anrlfYlavppslfeevaeklkkaglakeeewkrvvvEKPfGkdlesarelneelkkvfkeeqiyrIDhYLGketvqN 177
                      a+rlfY+a+pps+f++v+++lk++ +  +++ +rv+vEKPfGkdl+s+rel+++l+  ++e+q++rIDhYLGke+v+N
  KKY15487.1 123 kgqkeAHRLFYMALPPSVFTTVSQHLKRN-CYPKNGIARVIVEKPFGKDLQSSRELQKALEPDWDESQLWRIDHYLGKEMVKN 204
                 666555**********************7.66779***********************************************9 PP

>> ArAE_1_C  Putative aromatic acid exporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3     2e-05      0.12      58     134 ..      49     126 ..      46     130 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2e-05
                 CCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS--.HHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHHH CS
    ArAE_1_C  58 eNtllsneeyylkYfemRekQlevLkrmleelskieetv.eqakiiaelleelaesvheendaeelleeLeelkeefk 134
                  N++l n  + + Y + +    e Lkr+++ +++ +++v eq ++  el  +++ +++++++ +el + L+el++  k
  KKY15487.1  49 RNKFLPNGIKIVGYARTKMDHQEYLKRVRSYIKTPTKEVeEQLNQFCELCTYVSGQYDQDESFQELEKHLQELEKGQK 126
                 5888888889999999999*************9977766167899***************************998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       881  (0.0491383); expected 358.6 (0.02)
Passed bias filter:                      789  (0.0440069); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 3272.33
//
Query:       KKY15488.1  [L=354]
Description: putative smp-30 gluconolaconase lre-like region [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-26   91.1   0.0    2.8e-25   89.3   0.0    1.7  1  SGL           SMP-30/Gluconolactonase/LRE-like region
    0.00012   22.1   0.0     0.0012   19.0   0.0    2.3  1  Str_synth     Strictosidine synthase
  ------ inclusion threshold ------
      0.021   15.0   0.0      0.061   13.5   0.0    1.7  1  Arylesterase  Arylesterase


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.0   4.6e-29   2.8e-25      53     242 ..     114     331 ..      70     334 .. 0.76

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 4.6e-29
         SGL  53 rlvvasksglalldlas............geletladeeedekpllrfNDgvvdp.dGrlwfGtmgdeeakgeev.....galyrldpd.gklervldd 132
                  ++++++++l  +d++              +++++++++++    +++ND+ ++p dG++wf+++++++++g ++      ++yr+dp+ ++++ ++d+
  KKY15488.1 114 AILLCAQGSLEAQDPSGlvsikvtslavdPTIQPVVTNFHSI-VFNSVNDVIIHPtDGSIWFTDPCYGHHQGIRPpprlpNQVYRFDPQtKTIRAIADG 211
                 555555555544432221111111122223677777777555.99********98689***************99**************999******* PP

         SGL 133 ltipNGlawspdgktlYlaDsltrk..............iwaydv...daeggklsnrrvfadlkkgegepDGlavDaeGnvwvAvwgggkvvrfdpdG 214
                 +t pNGla+spd + lY++D+ + +              i+a+d+   d+  + l+nrr+f  +++g   pDG+ +D +Gnv++ +  g++v +++ +G
  KKY15488.1 212 FTRPNGLAFSPDLTILYITDTGALHgspeipidftgpshIYAFDIiqdDSGHPFLTNRRLF-AFAPGR-IPDGIKCDTKGNVYSGC--GDGVEVWNSHG 306
                 ******************665443333344444444445*****84422333458888877.777776.7***************5..689999***** PP

         SGL 215 klieeiklpakrvtscaFgGpdlrtLyi 242
                  l++ ik+p   v++ +Fg   + t+y+
  KKY15488.1 307 VLLGVIKVP-GGVANFCFGE--KGTMYL 331
                 *********.9*******73..367775 PP

>> Str_synth  Strictosidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0     2e-07    0.0012      38      74 ..     194     230 ..     161     235 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2e-07
   Str_synth  38 rllkydkstkvvkvlldkLyfanGialsedgsfvlvc 74 
                 +++++d++tk ++ ++d    +nG+a s+d + + ++
  KKY15488.1 194 QVYRFDPQTKTIRAIADGFTRPNGLAFSPDLTILYIT 230
                 69****************************9887665 PP

>> Arylesterase  Arylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     1e-05     0.061      38      73 ..     195     232 ..     190     235 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1e-05
  Arylesterase  38 vvYysp..sevkvvasglssanGInidadkkyiyvadi 73 
                   v+ ++p  + ++  a+g++ +nG+ +++d  ++y++d 
    KKY15488.1 195 VYRFDPqtKTIRAIADGFTRPNGLAFSPDLTILYITDT 232
                   666776224678899*********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2628.26
//
Query:       KKY15489.1  [L=424]
Description: putative sugar transporter stl1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-93  313.4  15.0    2.9e-93  313.2  15.0    1.0  1  Sugar_tr         Sugar (and other) transporter
    2.8e-22   79.1  35.4      4e-19   68.8  10.4    2.0  2  MFS_1            Major Facilitator Superfamily
     0.0052   15.7   4.1     0.0052   15.7   4.1    2.0  3  MFS_1_like       MFS_1 like family
  ------ inclusion threshold ------
       0.24   12.0   7.2       0.11   13.1   1.5    2.5  2  Phage_holin_3_2  Phage holin family 2
        3.9    7.6   7.4        3.1    7.9   1.6    2.7  2  DUF1201          Protein of unknown function (DUF1201)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.2  15.0   8.1e-97   2.9e-93      68     452 .]       4     396 ..       1     396 [. 0.94

  Alignments for each domain:
  == domain 1  score: 313.2 bits;  conditional E-value: 8.1e-97
                 HHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS- CS
    Sugar_tr  68 llgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn 166
                  +g+ +GR+ks +i++v++vig++lq +a    +   liv+Rv+vG+g+G+++ +vP++++E+Apk+ Rg  v ++ + + fGi++ +++++g++  s+
  KKY15489.1   4 AVGEQLGRRKSVAIGVVIMVIGSILQSTAF---TRPHLIVARVVVGVGLGIVNSTVPVLQAEFAPKATRGLYVCMQLTTLNFGIFFVYWMDYGFSFHSG 99 
                 67899*************************...88***********************************************************99999 PP

                 TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.........HTTHHHHSH.....HHHHHH CS
    Sugar_tr 167 adgwrillglqlvpallllilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeee....kaswkellsskt..vrqrlligv 259
                 +  wr+++ lq+v+   +l+l+++++E+Pr+l   +++eea evl++l+  + +d +l +  + + ++++ e      swk ll++ +   ++rlli++
  KKY15489.1 100 SFAWRVPVILQCVFLFPMLVLIWLIDETPRWLAADDRYEEALEVLRRLKSHNSDDADLRATHEDIVRTVNVEksigAGSWKDLLKNDSiqSQRRLLIAC 198
                 9**********************************************999988887777777777777776667779********9889899******* PP

                 HHHHHHHHTTHHHHHHHTTTHH.HHSS-THH..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS......CHHH CS
    Sugar_tr 260 vlqifqqltGinaimyysptif.enlglsks..llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvaks...kaasiva 352
                 ++q+fqql G+nai+yys+tif +++ +s     l+++ + ++ f+a+f+ ++l+dr+GRR+lll  +++ma+++++ +   + +++k+    a +i+a
  KKY15489.1 199 GIQAFQQLGGVNAIIYYSSTIFlKSVEFSAHtsSLMSGFLQTWFFLASFIPWLLIDRIGRRPLLLSMISVMAVVMAVQAALIYQVQHKTsisHASGIGA 297
                 *********************967899998888*********************************************933333333336889999999 PP

                 HHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGG CS
    Sugar_tr 353 ivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieel 451
                  +++++f  +f++g+  ++wv+ sE+ p+++R+ +++i++a+nw++n+ i +++p + ++ig ++++++fa+l+ + + ++++f+petkg++le++++l
  KKY15489.1 298 AIMLFVFQGAFTIGFQATVWVYPSEILPLRLRQRGSSISTASNWIMNYMIVQITPPAIQNIG-WKTYIIFAILNTVWVPIIYLFFPETKGLELEDVDRL 395
                 999***********************************************************.**********************************98 PP

                 T CS
    Sugar_tr 452 f 452
                 f
  KKY15489.1 396 F 396
                 7 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8  10.4   1.1e-22     4e-19      54     288 ..       4     273 ..       1     275 [. 0.75
   2 !   24.2  17.1   3.8e-09   1.4e-05      16     176 ..     214     385 ..     198     399 .. 0.79

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 1.1e-22
       MFS_1  54 rlsdrfGrrrvlllglllfalglllll...fa.sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllassl 148
                 ++++ +Grr+ + +g++++++g  +l    f+ +    l+v+rv+ G+g g++++++ +l a+ +pk  rg+++ +  ++ ++G+ + +     ++ + 
  KKY15489.1   4 AVGEQLGRRKSVAIGVVIMVIG-SILQstaFTrP---HLIVARVVVGVGLGIVNSTVPVLQAEFAPKATRGLYVCMQLTTLNFGIFFVYWMDYGFSFHS 98 
                 678899****************.55553344333...4**********************************************************555 PP

       MFS_1 149 g...Wravfyilaivsllafvlfllllpeepperkrkspkeee..........................kgtgpaplvp...........awkallkdp 207
                 g   Wr++ ++ +++++ ++vl ++l+  ++++r+  ++ + e                          +                     wk llk+ 
  KKY15489.1  99 GsfaWRVPVILQCVFLFPMLVL-IWLI--DETPRWLAADDRYEealevlrrlkshnsddadlrathediV--------RtvnveksigagSWKDLLKND 186
                 56*****************884.3444..44444444444444459999999999988888777776662........2333334446678******** PP

       MFS_1 208 vl.....willialllf...ffgfsglltllplylqevlglsglllaglllallalvgailallagrls.drlgrrrrlllallllllaa 288
                  +     + l+++ + +     g++++ +++ +++ +   +s + +++l++++l+  + +la ++ +l+ dr+grr+ ll ++++++++ 
  KKY15489.1 187 SIqsqrrL-LIACGIQAfqqLGGVNAIIYYSSTIFLKSVEFS-AHTSSLMSGFLQTWF-FLASFIPWLLiDRIGRRPLLLSMISVMAVVM 273
                 99665432.33333333222444444777777777*******.566666666666665.66779999999****9999999998888875 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 3.8e-09
       MFS_1  16 gpalplalaedlgispseigllltl.yalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllf........a....sslwlllvlrvlqGlgag 100
                 + + + +  ++  +s+++ +l+ ++  +++++++ +p+  l+dr+Grr++ll ++ ++a+  ++ +++        +    s++ + + l v+qG+++ 
  KKY15489.1 214 YYSST-IFLKSVEFSAHTSSLMSGFlQTWFFLASFIPW-LLIDRIGRRPLLLSMISVMAVVmAVQAALiyqvqhktSishaSGIGAAIMLFVFQGAFTI 310
                 33333.56677788899988877775667777777777.667*******9998888888886666664356655541556677889************9 PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGa.ilgpllggllasslgWravfyilaivsllafvlfllllpeep 176
                 ++ +++ ++ +++ p + r r+ ++ +a++ +   ++  +  +++ +++gW  +++i+ai+  +++ +++l++pe++
  KKY15489.1 311 GFQATVWVYPSEILPLRLRQRGSSISTASNWIMNyMIVQITPPAI-QNIGWK-TYIIFAILNTVWVPIIYLFFPETK 385
                 9999999*********************99999956666666666.6****9.9***********999999999876 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.8      0.92   3.3e+03     158     195 ..      17      55 ..      13      90 .. 0.52
   2 ?   -4.4   2.9       1.8   6.6e+03     247     280 ..      82     117 ..      36     124 .. 0.68
   3 !   15.7   4.1   1.4e-06    0.0052      23     132 ..     218     380 ..     203     389 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.92
  MFS_1_like 158 yaifafitGilidhysvnllp..ysallyvlaallvisll 195
                  +++ +++G +++ + ++  p  ++a ++v  +l ++ ++
  KKY15489.1  17 IGVVIMVIGSILQSTAFTR-PhlIVARVVVGVGLGIVNST 55 
                 4555555555555555533.22433334443333333333 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 1.8
  MFS_1_like 247 F..lflYLkelgasntllGslvalgvvaeiplfffa 280
                 F  +f+Y  ++g+s    + ++ + v+++ +++f +
  KKY15489.1  82 FgiFFVYWMDYGFSFHSGSFAWRVPVILQCVFLFPM 117
                 233566777888887777777777777777777755 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 1.4e-06
  MFS_1_like  23 tiylkskglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfippskerqeesklevsvaqdvd............... 106
                 ti+lks +++a+ + +++  l    +l++ i   l Dr+g+r  ++++ +++++v+ +   +i      q ++k+ +s a  ++               
  KKY15489.1 218 TIFLKSVEFSAHTSSLMSGFLQTWFFLASFIPWLLIDRIGRRPLLLSMISVMAVVMAVQAALIY-----QVQHKTSISHASGIGaaimlfvfqgaftig 311
                 79******************************************************99999888.....445555555555555667788888888888 PP

  MFS_1_like 107 ...........................................aektfwilfllvvlasfflaailvll 132
                                                            ++++ w   ++ ++ ++++ +i+ l+
  KKY15489.1 312 fqatvwvypseilplrlrqrgssistasnwimnymivqitppaIQNIGWKTYIIFAILNTVWVPIIYLF 380
                 888888888888888888888888888888888888999988888888888888888888888888765 PP

>> Phage_holin_3_2  Phage holin family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.5     3e-05      0.11      13      68 ..      16      72 ..      12      82 .. 0.88
   2 ?    1.2   0.4      0.16   5.6e+02      38      59 ..     259     280 ..     248     305 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3e-05
  Phage_holin_3_2 13 viGal.ialGklLvseepitlrLfiGRvilGsavslvagvaLvqfpdlsplavvGig 68
                      iG++ +++G +L s      +L++ Rv++G ++ +v + + v+  ++ p a  G+ 
       KKY15489.1 16 AIGVViMVIGSILQSTAFTRPHLIVARVVVGVGLGIVNSTVPVLQAEFAPKATRGLY 72
                     577651679******************************************999985 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.16
  Phage_holin_3_2  38 RvilGsavslvagvaLvqfpdl 59 
                      R +l s++s++a v+ vq   +
       KKY15489.1 259 RPLLLSMISVMAVVMAVQAALI 280
                      4588899999998888776544 PP

>> DUF1201  Protein of unknown function (DUF1201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.4     0.075   2.7e+02      14      32 ..      70      88 ..      67      91 .. 0.91
   2 ?    7.9   1.6   0.00087       3.1      16      31 ..     109     124 ..     105     127 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.075
     DUF1201 14 Gfliclflfclvvfiwfvy 32
                G+ +c+ l  l   i+fvy
  KKY15489.1 70 GLYVCMQLTTLNFGIFFVY 88
                8899**************9 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00087
     DUF1201  16 liclflfclvvfiwfv 31 
                 l c+flf ++v+iw++
  KKY15489.1 109 LQCVFLFPMLVLIWLI 124
                 78************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1075  (0.0599587); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.49
# Mc/sec: 2599.20
//
Query:       KKY15490.1  [L=272]
Description: putative 3-ketoacyl-acyl carrier protein reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-43  148.8   0.0    2.3e-43  148.5   0.0    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    1.3e-38  132.4   0.0    1.6e-38  132.1   0.0    1.1  1  adh_short     short chain dehydrogenase
     0.0001   22.3   0.0    0.00016   21.6   0.0    1.3  1  KR            KR domain
  ------ inclusion threshold ------
      0.023   14.5   0.0      0.049   13.4   0.0    1.5  1  ACT_7         ACT domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.5   0.0     5e-47   2.3e-43       7     233 ..      40     271 ..      39     272 .] 0.91

  Alignments for each domain:
  == domain 1  score: 148.5 bits;  conditional E-value: 5e-47
                   HHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTT.SEE..EE--TTSHHHHHHHHHHHHHHH.SSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2   7 GraiAkalaeeGaevvltdlneea..kkrveelaeelg.aev..lecDVtdeeqvealveevvekf.gklDilvnnagiapklkgpfletsreefdr 97 
                   G  iA++l +eG +++lt+  ++a  +  v+ l+++   ++v   ++DV++++++e+l+ee+++ +  + Dil+ nag+ ++  +++++++ eefd+
    KKY15490.1  40 GLSIAQSLFAEGVSLALTYWTNKAslEGLVDGLTTKERgQKVslHHIDVSSQSDLERLFEEIEQGYgRRPDILISNAGYGKR-ISDIMDIPIEEFDK 135
                   678*****************999988899999987755266677**********************6689************.************** PP

                   HHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--B.HCTGGGGSTTHHHHHHH CS
  adh_short_C2  98 aldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpi.kTlaasgikgfdellee 191
                   ++ +nl+  f l+k a+p+m ++  g+i+ ++s++a  +  n  +y+a+Ka+l +l+++l  +l+++g++vN vsp +i +T +  ++k + +  + 
    KKY15490.1 136 MIRINLRPSFILSKLAVPHMVSQgwGRIIFVTSIAAIGGGINGCHYAASKAGLTGLMKNLSSKLAKDGVTVNDVSPAMIgDTGMIPDAK-MLAGTAG 231
                   ******************7776669******************************************************5566666665.5566777 PP

                   HHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 192 learaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                     +++p+grlgtp+e+a+++ +L+   + y tGq +   gGl
    KKY15490.1 232 DPKNIPVGRLGTPQECANVVNMLCK--TGYLTGQSILLAGGL 271
                   88**********************9..56*********9997 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.1   0.0   3.6e-42   1.6e-38       2     187 ..      31     220 ..      30     225 .. 0.95

  Alignments for each domain:
  == domain 1  score: 132.1 bits;  conditional E-value: 3.6e-42
                 EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHH.SSESEEEE---S.S--SSGGG CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee..gakalaiqvDvtdreevealvekavkkl.gkldvLvnNAGi.tgsgpfse 95 
                  +l+tG ++G+   ia+ l +eG+++++ +  +++ le +++ l  +  g+k+   ++Dv++++++e+l+e++++ +  + d+L+ NAG  ++ +++ +
  KKY15490.1  31 LALITGRQEGL--SIAQSLFAEGVSLALtYWTNKASLEGLVDGLTTKerGQKVSLHHIDVSSQSDLERLFEEIEQGYgRRPDILISNAGYgKRISDIMD 127
                 589***99975..8**************8899999********9998899***************************6678*********99999**** PP

                 CSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS.SHHH CS
   adh_short  96 lseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvd.Tdma 187
                 +  ee++++i +Nl   f l+++++p+m++q +GrI++v+S+a+  + ++++ Y+AsKa+++gl+++l+  la++g++vn v P+++  T+m 
  KKY15490.1 128 IPIEEFDKMIRINLRPSFILSKLAVPHMVSQGWGRIIFVTSIAAIGGGINGCHYAASKAGLTGLMKNLSSKLAKDGVTVNDVSPAMIGdTGMI 220
                 ***************************************************************************************889885 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   3.6e-08   0.00016      13     166 ..      40     198 ..      31     209 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 3.6e-08
                 HHHHHHHHHHHH.S-EEEEE-SS..--HHHHHHHHHH..HHTT-EEEE----TT-HHHHHHHHHHHHHHS.S---EEEE------.---TTT--HHHHH CS
          KR  13 Glelarwlaekg.arhlvllsRsaaadedskaliael..ealgaevevvaaDvsdkdavealleeikaee.ppikGvihaAgvlr.dklleemtaedle 106
                 Gl++a+ l ++g    l + + +    ++ + l++ l  +++g +v++ ++Dvs+++++e+l+eei++   ++    i  Ag  +  + +++   e+++
  KKY15490.1  40 GLSIAQSLFAEGvSLALTYWTNK----ASLEGLVDGLttKERGQKVSLHHIDVSSQSDLERLFEEIEQGYgRRPDILISNAGYGKrISDIMDIPIEEFD 134
                 56788888888833344444444....3334455555115679************************9987666667888888763789********** PP

                 HHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHH CS
          KR 107 qvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsq 166
                 ++++  ++ +  L +l  +    +    +++++Sia++ g    ++Yaa  a l +l++  +s+
  KKY15490.1 135 KMIRINLRPSFILSKLAVPhmvsQGWGRIIFVTSIAAIGGGINGCHYAASKAGLTGLMKNLSSK 198
                 ***************9887566667788************************999999987765 PP

>> ACT_7  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.1e-05     0.049      18      56 ..     186     225 ..     177     227 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.1e-05
                 -SS--HHHHHHHHHHTTT---EEEE.-SS-EEEEEEGGGH CS
       ACT_7  18 fdvtGivaklaspLaeagIsifqiS.tyrtdyiLVpeedl 56 
                  ++tG ++ l+s+La+ g++++ +S   + d  ++p++++
  KKY15490.1 186 AGLTGLMKNLSSKLAKDGVTVNDVSpAMIGDTGMIPDAKM 225
                 459**********************999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1823.26
//
Query:       KKY15491.1  [L=515]
Description: putative sucrose transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-11   41.7  10.4    5.3e-11   41.7  10.4    2.2  3  MFS_2     MFS/sugar transport protein
  ------ inclusion threshold ------
      0.028   14.5   0.3      0.028   14.5   0.3    4.1  3  Sensor    Putative sensor


Domain annotation for each model (and alignments):
>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7  10.4   5.9e-15   5.3e-11      50     217 ..       2     178 ..       1     223 [. 0.77
   2 ?   -0.5   0.3     0.039   3.5e+02     182     246 ..     249     314 ..     187     330 .. 0.66
   3 ?   -3.2   0.0      0.25   2.3e+03     187     199 ..     453     465 ..     436     504 .. 0.39

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 5.9e-15
       MFS_2  50 DpivGtlidktstrwGrrrPwlllsaiilavsiillftppelsqs..........akfiwllvtyillrilytlfeipyvslvpv...ltkdydeRtsl 135
                  p+vG+++d+++ ++GrrrP++++++ii ++ +i+l ++ e+              ++i+++++  +l+ ++++++ ++ sl++    +++++     +
  KKY15491.1   2 QPVVGVIADRSTSKYGRRRPFMVMGTIIVSFCLIMLGWTSEIVGLfirnedtrksVTVIVAVLSIYVLDFAINAVQACSRSLIVDtlpISSQQAGSAWA 100
                 69****************************99999977777544379999***99999999999999***************98522256666666666 PP

       MFS_2 136 tsvrsflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkervemrkkekteqkeklslleql 217
                 t+   +  ++g +++++ ++++++ + g     + +  + +i a+ +l++v +++++++er  ++++ ++++++++++l  l
  KKY15491.1 101 TRLSTVGHLVGYFIGTLDMVAIFGTFLG----DTQFKKMCIISAAFFLFSVGVTCWAVRERILVEPAASERETSSFKVLSTL 178
                 6666667777777777777777777776....999**************************877777777777766665544 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.039
       MFS_2 182 mllgviivvlgtkervem.rkkekteqkeklslleqlkevfrnraflillllfllaalalgvlngl 246
                 ++  v +++++t        +  + + + + s+ +ql +v + r+ l+  ++f  a++a+++ ++ 
  KKY15491.1 249 IFSIVSFIAAVTLPHAVStPEVPSYTYRPPPSIAKQLHRVVNLRPDLVTTWGFAHAIFAVTMAFAP 314
                 222222333333333222244455566666777777777777777777777777766666666654 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.25
       MFS_2 187 iivvlgtkervem 199
                 +iv+++   ++++
  KKY15491.1 453 WIVFSILEPSKQE 465
                 3333333333222 PP

>> Sensor  Putative sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.3      0.35   3.1e+03     103     121 ..      30      48 ..      22      86 .. 0.41
   2 ?   -3.5   6.3         1   9.2e+03     101     125 ..     141     199 ..     135     267 .. 0.56
   3 ?   14.5   0.3   3.1e-06     0.028       5      48 ..     300     343 ..     264     515 .] 0.58

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.35
      Sensor 103 vlfvvavvllalalallta 121
                 v+f+++++ ++  +++l++
  KKY15491.1  30 VSFCLIMLGWTSEIVGLFI 48 
                 3333333334333333333 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1
      Sensor 101 glvlfvvavvllalalalltaPlw..................................t 125
                 +++lf+v v+++a+    l+ P++                                  +
  KKY15491.1 141 AFFLFSVGVTCWAVRERILVEPAAseretssfkvlstlihrtiylpariqaicwvqfwS 199
                 57888888888888888888888656665555555554444444444444333333330 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 3.1e-06
      Sensor   5 glplgvaafvllvtglslglgllvllvGlplLalalllarglaa 48 
                 g++ +++a++++++ ++ ++ ++ +lvG++ L++a++ + ++++
  KKY15491.1 300 GFAHAIFAVTMAFAPFVHSVHMATVLVGIAGLPWAIVCWAPFSE 343
                 44455555555555555555555555555555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3447.24
//
Query:       KKY15492.1  [L=321]
Description: hypothetical protein UCRPC4_g06359 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-17   62.0   1.7    1.6e-16   60.7   0.3    2.3  2  DUF2406   Uncharacterised protein (DUF2406)


Domain annotation for each model (and alignments):
>> DUF2406  Uncharacterised protein (DUF2406)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.3   9.1e-21   1.6e-16       1      63 [.      62     122 ..      62     122 .. 0.89
   2 ?   -1.6   0.0      0.25   4.5e+03       6      32 ..     222     251 ..     220     279 .. 0.55

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 9.1e-21
     DUF2406   1 AvseaqPfeqaadklslaalrsiqrsykDvfGkeiadpDlSNPtRsRdERPLdTIRsFeaaie 63 
                 A++e qP++ a ++ +la+lrs+   + D+ G++i++pD SNP+Rs++E PL TIR+F+  i+
  KKY15492.1  62 AMTEMQPAAMALEQPTLANLRSAS--FTDRTGQPIHEPDSSNPARSKWESPLQTIRGFQDDID 122
                 89********99955666666665..6********************************9885 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.25
     DUF2406   6 qPfeqaadkl.slaalrsiqrsy...kDvfG 32 
                 +P+++ +++  ++ + r++        D+fG
  KKY15492.1 222 EPMMNDSQQYyQYPQSREAST-AspeTDQFG 251
                 555554442223333333333.134466666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2314.65
//
Query:       KKY15493.1  [L=1144]
Description: putative snf2 family helicase atpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-51  174.5   0.4    4.2e-51  173.7   0.4    1.3  1  SNF2_N         SNF2 family N-terminal domain
    3.9e-17   62.6   0.1    2.7e-16   59.9   0.1    2.3  2  Helicase_C     Helicase conserved C-terminal domain
    3.1e-11   43.6   0.0    7.6e-11   42.3   0.0    1.7  1  ResIII         Type III restriction enzyme, res subunit
     0.0001   22.1   0.0     0.0002   21.2   0.0    1.4  1  DEAD           DEAD/DEAH box helicase
     0.0011   18.2   0.1     0.0026   17.0   0.1    1.5  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.7   0.4   1.2e-54   4.2e-51      51     347 ..     591     870 ..     560     873 .. 0.84

  Alignments for each domain:
  == domain 1  score: 173.7 bits;  conditional E-value: 1.2e-54
                 HHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH--------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  51 akqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapkllad 149
                 +++ +  +iLaD+mGLGKT qv+a+++++ +   + +        +gp+L+vvPas+l++W +e++++++   ++ l+++++++   + ++  ++   +
  KKY15493.1 591 LYKYNLSCILADDMGLGKTCQVIAFLAHLLE---IGE--------KGPHLVVVPASTLENWLKEFRKFCPALVVEPLYGSEKERF--EIRERMEEERDN 676
                 6677889********************4444...333........489************************9999999998744..444667788899 PP

                 --EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HH.HHHHHTHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
      SNF2_N 150 ydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekq.tfdkllqr 247
                  dv++tt ++ + +         l +    + + DE+h l+n ts+++e + +++ + r++ltGTP+qn+l++l++Ll f+ +++f ek+   +  +++
  KKY15493.1 677 IDVIVTTQHTAKAKE----DAPWLRSFGFTCAIFDEAHFLRNATSQVYEKLIRIKCDFRLLLTGTPLQNNLQELMSLLGFILPSVFREKKgQLQAIFSQ 771
                 9*********99666....6889*****************************************************************77588888888 PP

                 HHH........HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-HHHHHH CS
                 xxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 248 pie........aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskekilelll 338
                 +++          ++++++r +++l++++lrr k +v k++P+k+ ++ ++++s+ + ++Y++  e+    a+  + +r  a+ ++++   ++  + l+
  KKY15493.1 772 KAKtgedshdaLLSTQRIARARSMLSPFILRRKKHQVLKDIPNKIRRVEYCDMSQAQIEIYTKWQEK----ARTIMEQR--ASGTQNT---NESANVLM 861
                 88889899887788999999999***************************************33333....33333333..3333333...33556788 PP

                 HHHHHHH-- CS
                 xxxxxxxxx RF
      SNF2_N 339 elrqacnhp 347
                 +lrqa  h+
  KKY15493.1 862 KLRQAAIHE 870
                 888887776 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.52   1.9e+03      39      74 ..     647     684 ..     612     708 .. 0.65
   2 !   59.9   0.1   7.6e-20   2.7e-16       4     111 .]     943    1053 ..     940    1053 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.52
                 T..TSTEEEESTTSTHHHHHHHHHHHH..TTSSSEEEESG CS
  Helicase_C  39 k..gikvavlhgelpqnereeileqfn..kgesdvLiatd 74 
                 +  ++ v +l+g  + +er ei e++   ++++dv+++t+
  KKY15493.1 647 FcpALVVEPLYG--SEKERFEIRERMEeeRDNIDVIVTTQ 684
                 255677777777..77888888888875456677888876 PP

  == domain 2  score: 59.9 bits;  conditional E-value: 7.6e-20
                  HHHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSH CS
  Helicase_C    4 eallell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlprnv 97  
                   + +ell +++e+g+++lif++++  l+ ++++ ++  i + +l+g++p n r++++++fn  +++  ++++t++++ Gi++  +n +i+fd  +n+
  KKY15493.1  943 MKTVELLnQFRESGSRALIFSQFTMVLDILEMVMKTMRIAYRRLDGSTPVNLRQDMIDEFNnTDDIPvFMLSTKAGGAGINLATANKIIIFDSSFNP 1039
                  5667788889***************9988899988889**********************9668888999*************************** PP

                  HHHHHHHTTSSSTT CS
  Helicase_C   98 tsyiqriGRtgRag 111 
                  ++ iq+  R++R+g
  KKY15493.1 1040 QDDIQAENRAHRIG 1053
                  ************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   2.1e-14   7.6e-11       2     169 ..     575     738 ..     574     740 .. 0.81

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 2.1e-14
                 -EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.........GEEEESSS-B- CS
      ResIII   2 lelreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke.....igkkvsgdkkk 95 
                 +++++yQ   i+ l+  +  k +   +++   G GKT   +++ ++ll+ g++   l++vp  +l e +l+ef+kf +  + e     +        k+
  KKY15493.1 575 FKMKDYQVVGINWLALLY--KYNLSCILADDMGLGKTCQVIAFLAHLLEIGEKGPHLVVVPASTL-ENWLKEFRKFCPALVVEplygsE--------KE 662
                 778888888887776555..58888999999*******************9999*******9886.89**********99755544332........33 PP

                 -.............-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS...TTTHHHHHT---SEEEEEESS- CS
      ResIII  96 a......kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak..kswreilekfkeavllglTATp 169
                 +       e++++n++++vtt ++++a++     +   l++  f + i+DEaH l+ +  + ++++++  k  ++l lT+Tp
  KKY15493.1 663 RfeirerMEEERDNIDVIVTTQHTAKAKE-----DAPWLRSFGFTCAIFDEAHFLRNAtsQVYEKLIRI-KCDFRLLLTGTP 738
                 334455566899*************9999.....77778888899********9999643477775554.999********9 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   5.7e-08    0.0002      16     155 ..     597     729 ..     583     746 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 5.7e-08
                 EEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH....HTTCSEEEEEHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx RF
        DEAD  16 dvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl....dngvdivvgtpgrldd 110
                 ++++a + G GKT   +i+ l++++e    ++   l+v+P   L e+ l++++kf+    l v+ ++g++++r ++++     + ++d++v+t      
  KKY15493.1 597 SCILADDMGLGKTCQ-VIAFLAHLLE--IGEKGPHLVVVPASTL-ENWLKEFRKFCPA--LVVEPLYGSEKERFEIRERmeeeRDNIDVIVTTQHTAKA 689
                 67888899*****76.7777778887..4455567999999998.899*********7..67777799777766655553432355********88887 PP

                 HHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 111 llstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcd 155
                   +   l+   +++ ++DEa+ l +   s+ ++++++ +   +cd
  KKY15493.1 690 KEDAPWLRSFGFTCAIFDEAHFLRNA-TSQVYEKLIR-I---KCD 729
                 333334555566779******99998.6666666433.3...455 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   7.1e-07    0.0026      46     148 ..     943    1052 ..     927    1073 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 7.1e-07
  ERCC3_RAD25_C   46 fracefLikyhekrgDkiivfsDnvfaLkey...akklkkpy..iyGetseaerlkilqkfkknpkvntifls.kvgDtsiDlPeanvliqiss 133 
                     ++++e L +++ + g + ++fs   + L  +    k+++ +y  + G+t+ + r++++++f++++++ + +ls k g + i+l +an +i  +s
     KKY15493.1  943 MKTVELLNQFR-ESGSRALIFSQFTMVLDILemvMKTMRIAYrrLDGSTPVNLRQDMIDEFNNTDDIPVFMLStKAGGAGINLATANKIIIFDS 1035
                     45566555555.5688999999977766544000444444444489**************************97899**********9999888 PP

  ERCC3_RAD25_C  134 hfgsr..rqeaqrlGri 148 
                      f  +   q   r  ri
     KKY15493.1 1036 SFNPQddIQAENRAHRI 1052
                     77643113444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.51
# Mc/sec: 6756.25
//
Query:       KKY15494.1  [L=241]
Description: putative glycoside hydrolase family 43 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.49
# Mc/sec: 1493.83
//
Query:       KKY15495.1  [L=484]
Description: putative xenobiotic compound family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-33  114.2   0.6    2.5e-29  102.7   0.0    2.2  2  Bac_luciferase   Luciferase-like monooxygenase
    1.1e-05   25.2   6.2    2.3e-05   24.2   6.2    1.4  1  UNC-93           Ion channel regulatory protein UNC-93
    0.00011   21.2  12.2    0.00017   20.6  12.2    1.3  1  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.039   13.7   0.3       0.44   10.3   0.0    2.5  3  Endonuc-PvuII    Restriction endonuclease PvuII
       0.16   11.4   0.0       0.25   10.8   0.0    1.2  1  Methyltrn_RNA_3  Putative RNA methyltransferase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   4.6e-05      0.16      14      51 ..     210     246 ..     203     250 .. 0.84
   2 !  102.7   0.0   6.9e-33   2.5e-29     116     304 ..     244     482 ..     243     484 .] 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.6e-05
  Bac_luciferase  14 algaasaslrylvelaraaEelGfdavwvaehhggpgg 51 
                     ++ +++ ++++ ++la+++E+++f+++++a+++gg++g
      KKY15495.1 210 QQYRYN-DVDHWIALAQKVEAAKFHGFFFADALGGNFG 246
                     445555.89************************98765 PP

  == domain 2  score: 102.7 bits;  conditional E-value: 6.9e-33
  Bac_luciferase 116 rfGv....dhderyarlrEfvevlrrlwrg....................eevdfeGeffsvkgalllprpgqgpiP.vyvaaaspaglelaarh 185
                     +fG+    +hd+ry++++E++ev+ +lw++                    + ++++G++f v g+ l+ +++q+  P ++ a++s ag ++aa+h
      KKY15495.1 244 NFGLtqqiEHDKRYEMADEYLEVVYKLWESswregarvndgkvftdpsavRQINHKGKYFDVPGPALTEPSPQR-TPfLLQAGTSGAGKAFAAKH 337
                     67888888********************6689999**************8888*********998888888787.9*88889999********** PP

  Bac_luciferase 186 adglllageppeeaaelierlragaaeagrdpadirvgisltvivadteeeAraearaliagld.................fyaldsegagreae 263
                     a++++++  +pe ++  +++lr++a+ +gr p+ +++++++++iva+t+e+A+a++++l + +d                  y +++ +   +++
      KKY15495.1 338 AEAIFVNAHHPELIKPSVDSLRSRAKDFGRYPNGLKIIAGVFIIVAETNEAAQAKLDDLSKYGDregalalfggwsgfdlsKYSDKQDFRFVDEP 432
                     ************************************************************88888887777777777777755555555555555 PP

  Bac_luciferase 264 aaeiqeeedanlwagaadav.pdelvaatal........vGtpeqvaerl 304
                     + +++ +++a+   g +     ++ +a  ++        vG++e+va++l
      KKY15495.1 433 TIRSMVTHWAKTVPGTEGKPwNKKTIAYSLIiggqspkiVGNAETVADEL 482
                     55554444444444444443333333333334455555566666666665 PP

>> UNC-93  Ion channel regulatory protein UNC-93
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   6.2   6.4e-09   2.3e-05      45     110 ..      61     130 ..      53     152 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 6.4e-09
      UNC-93  45 iiyavftvanlvapsvvdlltakwalvigallyaifqlgFllln....kyylyissallGvgaallwtgq 110
                 + ++  + + l++ ++v+ ++ kw+l++g+l y+++ +g    n    ++ +++++a+ G++a ++w+++
  KKY15495.1  61 MSFSLMVSSYLFSSTLVHYIGNKWSLIVGTLGYVLYAMGLYTNNrfgtQWTVLFGAAMCGLSAGIFWMSE 130
                 5677778889*****************************988774444699****************986 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6  12.2   4.8e-08   0.00017      42     139 ..      62     163 ..      17     187 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 4.8e-08
       MFS_1  42 algaavaslpl.GrlsdrfGrrrvlllglllfalglllllfa....sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGai 135
                 ++  +v+s+++ + l+  +G ++ l++g l+++l  +++l++     + w++l++ +++Gl ag+++ + aa++  +  +  +gr +g++ ++   G +
  KKY15495.1  62 SFSLMVSSYLFsSTLVHYIGNKWSLIVGTLGYVLY-AMGLYTnnrfGTQWTVLFGAAMCGLSAGIFWMSEAAIALSYPEPYTQGRFFGFWLSFRLGGQV 159
                 3344555555538888889****************.666654344466789************99999999999999999*************999999 PP

       MFS_1 136 lgpl 139
                 lg +
  KKY15495.1 160 LGGA 163
                 9975 PP

>> Endonuc-PvuII  Restriction endonuclease PvuII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.18   6.4e+02      86     105 ..       7      25 ..       3      39 .. 0.70
   2 ?   -2.9   0.0       1.4   5.1e+03      63      89 ..     179     205 ..     166     230 .. 0.64
   3 ?   10.3   0.0   0.00012      0.44      98     141 ..     245     286 ..     241     302 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.18
  Endonuc-PvuII  86 ailekyrrvewyiavyknie 105
                     ile+y +v+wy + + n  
     KKY15495.1   7 RILEQY-KVKWYRSTFYNAL 25 
                    689999.69***98776643 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.4
  Endonuc-PvuII  63 eyelktvnvelsrsvtthhhlneaile 89 
                     ye+  v ++l+       hln+ +++
     KKY15495.1 179 SYEVYLVFITLQAIEPVAGHLNPGLFK 205
                    577888888888777777788877653 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00012
  Endonuc-PvuII  98 iavyknielkeiyrlkpesleskfsewekkvrdeggkdinnpki 141
                    +++ ++ie  + y+++ e le  ++ we+ +r   g  +n+ k+
     KKY15495.1 245 FGLTQQIEHDKRYEMADEYLEVVYKLWESSWR--EGARVNDGKV 286
                    6778899999**********************..4556777765 PP

>> Methyltrn_RNA_3  Putative RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.1e-05      0.25     200     268 ..     378     448 ..     360     453 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.1e-05
  Methyltrn_RNA_3 200 lsigtsergekveeklaelekkkefkhllivfGgvrgleaaleadeel..klegekaeelFdlwlntvpnq 268
                      + i+  e++e  + kl++l+k  +++ +l +fGg++g++ +  +d++    +++ ++++++ +w +tvp+ 
       KKY15495.1 378 VFIIVAETNEAAQAKLDDLSKYGDREGALALFGGWSGFDLSKYSDKQDfrFVDEPTIRSMVTHWAKTVPGT 448
                      456666778889999999988879*****************999988884444999************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.49
# Mc/sec: 2949.71
//
Query:       KKY15496.1  [L=408]
Description: putative peptidase family t4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.8e-109  364.2   0.1   6.7e-109  364.0   0.1    1.0  1  Peptidase_S58  Peptidase family S58


Domain annotation for each model (and alignments):
>> Peptidase_S58  Peptidase family S58
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  364.0   0.1  3.7e-113  6.7e-109       1     296 [.      34     386 ..      34     389 .. 0.96

  Alignments for each domain:
  == domain 1  score: 364.0 bits;  conditional E-value: 3.7e-113
  Peptidase_S58   1 naitDVaGvrVghatlae.........ge.vrtGvTvilprgnlfkekvvAavdvlnGfgkttgtdqleelglletpivLtntlsvgaaadgvvew 86 
                    n++tDV+Gv V +++++           + ++tGvT+ilpr+++f++ ++A+++++nG+g++tg+++l+e+gll++pi++tn+lsvgaa++g++++
     KKY15496.1  34 NSLTDVPGVLVSTQSIHLpagynkdkpASvINTGVTTILPRKDWFDNGCYAGYFRFNGSGEMTGSHWLDETGLLNSPIIITNSLSVGAAYSGIYQY 129
                    99**************77999999999667****************************************************************** PP

  Peptidase_S58  87 lle..eeee....eearsvvpvVaetnDgvlndiragavkeehvaealaaAaaapvaeGnvGaGtGmiafglKGGiGtaSrvlee....gekeytv 172
                    +++  +  +      +++++pvVaet+Dg++ndi+a+ v++e +++ +++A++++v+eG++G+GtGm++ g+K+G+G+aSr+++     ++k+++v
     KKY15496.1 130 AVRehA--NketgLVNWFLLPVVAETYDGFMNDIGAMVVTPEMIVKGIDTAKSERVEEGCTGGGTGMCCQGFKAGTGSASRIVPGmvrgERKDFVV 223
                    ***653..33367889********************************************************************777766677*** PP

  Peptidase_S58 173 galvqaNfggredlriagvpvgkelaeea................kdgsiivvvatDapLskrqlkrlakraalGlartgsphsngsGDivlafst 252
                    galvqaNfg ++dl + +vpvg++ +ee+                kdgsiiv +at+apL+++ql+rla+ra+ Gl+rtg++++n+sGDi+lafst
     KKY15496.1 224 GALVQANFGAARDLMFGNVPVGRIFEEEKrnknapseaeestlspKDGSIIVTIATNAPLHPTQLRRLARRATPGLSRTGGWGANFSGDIFLAFST 319
                    ***********************9999999****************************************************************** PP

  Peptidase_S58 253 aekepe.......................evledeeldelfeaaaeaveeAilnallaAetvtgrdg 296
                    a+++p+                       +v++d++++ lfeaa eaveeAiln+l++Aet++g +g
     KKY15496.1 320 AHHIPRvpppsgglsgrdamftatveqsvDVVQDSSINGLFEAAGEAVEEAILNSLCMAETMDGPEG 386
                    ****99***********************99*********************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 2505.13
//
Query:       KKY15497.1  [L=369]
Description: putative inosine-uridine preferring nucleoside hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      7e-36  124.3   0.0    8.3e-36  124.1   0.0    1.0  1  IU_nuc_hydro  Inosine-uridine preferring nucleoside hydrolase


Domain annotation for each model (and alignments):
>> IU_nuc_hydro  Inosine-uridine preferring nucleoside hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.1   0.0   4.6e-40   8.3e-36       1     303 [.      20     348 ..      20     350 .. 0.74

  Alignments for each domain:
  == domain 1  score: 124.1 bits;  conditional E-value: 4.6e-40
                   EEEEEEE--SHHHHHHHHHHHCTHTTEEEEEEEE-SSSS-HHHHHHHHHHHHHHHCT.TT.S-EEEE-SS-SSSS....S-SHHHHTTTSSTSS... CS
  IU_nuc_hydro   1 rkvilDtDpGiDDalAlllalaespeiellgittvaGnvsleqatrnalrvlealgg.rddipvyaGaekpllre....kaaaeihGedGlgdv... 89 
                   +kvil  D++   ++  llal+    +++lg++  + n+++ q+  + l++l ++g+ +++ipvy+Ga+ pll++    +a ++ihG     ++   
    KKY15497.1  20 QKVILNNDWSSAGFIPYLLALN--AGWDVLGLIGDTANSWALQTSLHGLATL-EVGNlSECIPVYKGADYPLLNTpelfQAWEDIHGVLPWEGAfaa 113
                   5899999999877777788887..46**************************.99889999***********999988777777**99444322122 PP

                   .........-.--SSH.....................CSCSSHHHHHHHHHHHHCHHTTTTEEEEECS-SHHHHHHHHHTCCHHHHEEEEEEE---S CS
  IU_nuc_hydro  90 .........llpeper.....................kaesesavdalidaveaareypgevtlvatGplTNiAlalrldpelakkvkrlviMGGaf 156
                            +     +                     + ++  a+  l+d+v   ++ypgev + + G+lTNiAla+r+dp++a+k k lviMGG +
    KKY15497.1 114 enltyealgN-----DptsgnpdrvskaafyegypntTLAEGYAAAWLVDTV---NKYPGEVIIYTGGALTNIALAVRMDPKFASKTKGLVIMGGYI 202
                   2333333321.....0333444555566666666665555555555578888...****99************************************ PP

                   S.....S--SS...SSSS-HHHHHSHHHHHHHHHT.S-E.EEEE-HHHHTTSCHEECHHHHHHHHCSTCBHHHHHHHHHHHHHHHHHHHHHSSEEE- CS
  IU_nuc_hydro 157 t.....arGNv...tpvaEfNifvDPeAAkiVles.apvkitlvpldvthkvqalltseeveelaalekglgafladllefyikaykeaegsdgapl 244
                   +      +G +   +  +++N+++DPe  ki l++  p +it+v+ ++ +  q +++ +++ +++ +  +++      +e + ++y     ++ +p+
    KKY15497.1 203 DvnllqVTGSTllaDLNSDINLMIDPEGSKIALTAdFP-NITIVG-NAAN--Q-EFPDQAYWNQTYT-VKNP-----YTELVYNHY-----GTSFPF 283
                   99998755555332347****************98544.79****.6676..5.4444333332111.1222.....223333334.....4567** PP

                   HHHHHHHHHH-GGGEEE.EEEEEEEESS.SSTTTTEEEEETSTT....TTS--EEEEEEE-HHHH CS
  IU_nuc_hydro 245 hDplavavaldpelvtt.krlavdvele.ggltrGrtvvdlrrl....kkaknvkvatevdverf 303
                   +D +a++ +ldp+ v + +++++dv+++ +++++G   + ++ l    ++ k+v  + evd +++
    KKY15497.1 284 WDETAIFSVLDPSNVLNsTKFYLDVDTQwNSPSYGNIHAYQKALmpklQDLKEVDFVLEVDGAKL 348
                   ************87755599*******99999***986544444888899999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.51
# Mc/sec: 2180.73
//
Query:       KKY15498.1  [L=263]
Description: putative hemerythrin hhe cation binding domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.7e-10   40.2   1.4    7.7e-06   26.6   0.0    2.1  2  Hemerythrin  Hemerythrin HHE cation binding domain
    7.8e-06   26.2   0.0    1.9e-05   24.9   0.0    1.7  1  FHA          FHA domain


Domain annotation for each model (and alignments):
>> Hemerythrin  Hemerythrin HHE cation binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   8.5e-10   7.7e-06       8      95 ..     112     199 ..     107     202 .. 0.80
   2 !   17.5   2.0   5.2e-07    0.0047       8      91 ..     182     263 .]     176     263 .] 0.96

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 8.5e-10
                  HHHHHHHHHHHHHHHHHHHHHHHCCC..HCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH.CCC.HHHHHHHHHHHHHHHHHHHHHHHHCH CS
  Hemerythrin   8 eeHralrallerlraladaaaevhga..lrklaelldelvdeleaHhaaEEellfPlledrpggravldvlereHdeirelleelrellk 95 
                   +H ++ + +++    a a+    g    ++++ + ++l + +  Hh+ E++++fP le+++  ++ +++ +++H  +++ lee+ ++++
   KKY15498.1 112 VIHNMINRGFNAAYNQAKAIQ--SGTksADDFLVFNQFLYEFISNHHEVEDNVFFPDLEAANKSPGLMSENTEQHKLFHDGLEEFGKYVN 199
                  689999999995544444443..3444489999999999999999*********************************999999877665 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 5.2e-07
                  HHHHHHHHHHHHHHHHHHHHHHHCCCHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH.CCC.HHHHHHHHHHHHHHHHHHHHHH CS
  Hemerythrin   8 eeHralrallerlraladaaaevhgalrklaelldelvdeleaHhaaEEellfPlledrpggravldvlereHdeirelleelr 91 
                  e+H+ + + le+  +++++++++h++  kl++++d++++ + +H+++E +  f  l+ +++ +a +dv ++ H  + + ++++r
   KKY15498.1 182 EQHKLFHDGLEEFGKYVNETSKDHYDSNKLLRIMDSFREPMVQHLRDELTT-FLDLR-DENNDALMDVFRKSHKTAIAHMDKFR 263
                  89************************************************9.99999.******************99999876 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   2.1e-09   1.9e-05      31      68 ..      23      60 ..       9      61 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 2.1e-09
                CEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEE CS
         FHA 31 sgkvyleDlgSknGtfvNgqrigkgepveLksgdviel 68
                + k y++Dl S nGt vNg + + +++ eL ++dvi++
  KKY15498.1 23 KVKPYIIDLESANGTKVNGDPAPAKRYFELMDKDVIKF 60
                4678********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2030.56
//
Query:       KKY15499.1  [L=299]
Description: putative hsp40 co-chaperone [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-08   32.3   0.2    1.7e-07   31.3   0.2    1.6  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.2   9.4e-12   1.7e-07       2      63 .]      64     132 ..      63     132 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 9.4e-12
                 HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTS.........CCHHHHHH......HHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   2 yYeiLgvskdasedeIkkaYrklalkyHPDkn.........pkdpeaee......kFkeineAyevLsdpekRkqYD 63 
                 +Yei  +++da  +  k  +++l+++yHPD++                       +++ +  A+e Lsdp kR++YD
  KKY15499.1  64 PYEIFHLERDAPYS--KHTFYRLVKMYHPDRHgreethlggL------ShsvkleRYRLVVLAHELLSDPIKRSEYD 132
                 69999999998877..89**************5444443332......0344455*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 2382.48
//
Query:       KKY15500.1  [L=110]
Description: putative lea domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.28   11.1  13.7        6.3    6.8  13.7    3.0  1  CsbD      CsbD-like


Domain annotation for each model (and alignments):
>> CsbD  CsbD-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  13.7   0.00035       6.3       2      50 ..      60     108 ..      56     110 .] 0.83

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00035
        CsbD   2 kikgkaeqvkG.kvKeaaGkaTgdekleaeGkadqlkGkaqqkygdakda 50 
                 +i  ka+ ++G ++K+a G a++  + ea+Gk ++lkGka+ +++ +k +
  KKY15500.1  60 QITDKAKSAAGvNAKKAEGSAAEL-SGEAKGKTEELKGKAKGTAEEIKGK 108
                 788888888887799999999875.5699999999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 729.78
//
Query:       KKY15501.1  [L=631]
Description: putative and nb-arc domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-08   34.6   0.0    1.8e-08   33.9   0.0    1.2  1  NB-ARC     NB-ARC domain
    3.9e-05   24.1   0.0    9.1e-05   22.9   0.0    1.7  1  AAA_16     AAA ATPase domain
     0.0028   17.9   0.0     0.0067   16.7   0.0    1.7  1  AAA_22     AAA domain
     0.0045   17.0   0.0       0.01   15.8   0.0    1.6  1  AAA_5      AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.012   15.0   0.0      0.025   13.9   0.0    1.5  1  ATPase     KaiC
      0.012   15.3   0.0      0.026   14.3   0.0    1.4  1  RuvB_N     Holliday junction DNA helicase RuvB P-loop domain
      0.052   13.7   0.0       0.11   12.6   0.0    1.6  1  AAA_33     AAA domain
      0.079   13.5   0.0       0.29   11.7   0.0    2.0  2  AAA_18     AAA domain
       0.18   11.6   0.0       0.37   10.5   0.0    1.5  1  IstB_IS21  IstB-like ATP binding protein
       0.21   11.1   0.0        1.7    8.2   0.0    2.2  2  cobW       CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   9.9e-12   1.8e-08      17     230 ..     289     505 ..     273     526 .. 0.75

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 9.9e-12
                 TSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCCCBT.EEEEEEE.ESXXHHHHHHH..XXHHHHHCCCTTSS.SS-STTSHHHHHHHHCCCT.TEEEEE CS
      NB-ARC  17 elqslvvalvGmgGvGKttlakqilnksdevegrFd.svawvvv.sktdkseeile..tilkeLslseddle.ekeeveslkrklvrlLltk.rfllvl 109
                 + +s  v + G +G GKt l+++ + +     ++++ ++ w+   s+++  ++ ++  +++  ++ ++ ++e ++ +++   + ++  L++k + l+vl
  KKY15501.1 289 KKGSCAVLVCGPPGGGKTHLVREYVWS---HAENYPgGIFWIDAkSEESRLKSFWDivQVASSIGSADFEDErSFGQSN-FVDTIRIWLESKqNWLMVL 383
                 55677899**************98888...4679998999**5426666666666611144455555433330333333.******************* PP

                 EEE-SHHH..H.....HHHHCHTTSEEEEEESBCCCCCCS-S-.EEEEEESS--HHHHHHHHHHCCTS-GGCHH..CHHHHHHHHHHCTT-HHHHHHHH CS
      NB-ARC 110 DDVweeed..wdkigvvlparenrlrvllTTRdeevanavsat.sekievelLekdeawellenkvfekkleekesleevakeivekckGlPlalkvlg 205
                 D V  e +  +++    +p    +  +++T+ d ++a + +      + v+ L++dea +ll +       ++k    + ake+v+  + lPla+ + g
  KKY15501.1 384 DGVSIESEeiMQRFRKFIP-DCTGGFIIFTSVDPSLARRQHLLyPGAVTVHPLSEDEACNLLYSRIGITVPNHK--QSAKAKELVRYFQCLPLAVHATG 479
                 ***7664446777777777.5667789***********99998788899999*****99998766555444444..4799*****************99 PP

                 HHHC-T.CSCCHHHHHHHHHHCTGCC CS
      NB-ARC 206 gllstk.ktveewkkvleklesklle 230
                   ++ +   +e+++  +++++++l+e
  KKY15501.1 480 HRIRGRgIALEKFNPESSSIDRRLAE 505
                 98887766677777666666666665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   5.1e-08   9.1e-05       2      76 ..     268     343 ..     267     412 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 5.1e-08
      AAA_16   2 lvGReeeleqLlsale..rvrsgrpelvllsGesGvGKsslvrellralekd..ggif.lrgkcdqlesaipysalaqal 76 
                 ++G ++el++L  al+  + r+ ++++vl+ G++G GK+ lvre   +  ++  ggif + +k +++    ++  ++++ 
  KKY15501.1 268 FFGFKQELQELDLALRdeNKRKKGSCAVLVCGPPGGGKTHLVREYVWSHAENypGGIFwIDAKSEES----RLKSFWDIV 343
                 667789*****99999654444444*******************99877777776666699998888....222344444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.7e-06    0.0067       7      56 ..     294     339 ..     287     412 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.7e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.sskdl 56 
                  ++v+G++G GKT+l+r+++ ++ e     + + +++ ++++s++  +k++
  KKY15501.1 294 AVLVCGPPGGGKTHLVREYVWSHAE-----NYPGGIFWIDAKSEEsRLKSF 339
                 4789***************998743.....345555567777776333333 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.7e-06      0.01       2      81 ..     295     393 ..     294     402 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.7e-06
                 EEEE--SSSSHHHHHHHG..GGGBS--EEEEE--TT--HHHHH--B--....................--------......G-SEEEEESGGG--HHH CS
       AAA_5   2 vlLvGppGtgKselaerl..aaalnreveyvqltrdtteedlkgrreik...........ngttslvdsplvraar......egeilvlDEveraesev 81 
                 vl+ GppG gK+ l++++  ++a n +  +  + ++ +e+ lk  ++i            ++++s+ +s +v+ +r      + +++vlD+v   + e+
  KKY15501.1 295 VLVCGPPGGGKTHLVREYvwSHAENYPGGIFWIDAKSEESRLKSFWDIVqvassigsadfEDERSFGQSNFVDTIRiwleskQNWLMVLDGVSIESEEI 393
                 8999************99445566***********************9999999999999999999999***9999****9999*******98444555 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.4e-05     0.025      21      94 ..     294     374 ..     280     421 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
      ATPase  21 vvlitGepGtGKtifalqFlikgaekygepgvfvtveepa......edlrenakslG.wdlekleeegklaiidasesaee 94 
                 +vl++G pG GKt ++ +++++ ae+y      +   +++       d+ + a+s+G  d+e+ ++ g+ +++d+ +   e
  KKY15501.1 294 AVLVCGPPGGGKTHLVREYVWSHAENYPGGIFWIDAKSEEsrlksfWDIVQVASSIGsADFEDERSFGQSNFVDTIRIWLE 374
                 69*********************9995444444555444445666666666666666346777777777777776665555 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.4e-05     0.026       8      50 ..     267     309 ..     262     314 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-05
      RuvB_N   8 eyigqekvkeklkifieaakkreealdhvllyGpPGlGkttla 50 
                  + g ++  ++l+++++  +kr++    vl++GpPG Gkt l 
  KKY15501.1 267 TFFGFKQELQELDLALRDENKRKKGSCAVLVCGPPGGGKTHLV 309
                 6899999999******************************985 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.4e-05      0.11       2      20 ..     295     313 ..     295     421 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.4e-05
      AAA_33   2 vllvGlpGsGKstlaerll 20 
                 vl++G+pG GK++l+++++
  KKY15501.1 295 VLVCGPPGGGKTHLVREYV 313
                 799*************986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         5     9e+03     108     123 ..     188     203 ..     161     247 .. 0.68
   2 ?   11.7   0.0   0.00016      0.29       1      97 [.     295     409 ..     295     423 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5
      AAA_18 108 eRlekRgyeeakiken 123
                 +R+ +R++ee  + +n
  KKY15501.1 188 QRVIARRWEEETQVRN 203
                 4444444444433333 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00016
      AAA_18   1 IlltGtpGvGKttlakeL..skrlgf..gvnlrdvakenglllevdpe.......aldeskrldedkldklldaleenssaleegknl.vidghlaele 87 
                 +l++G+pG GKt l +e   s  +++  g+  +d  +e+  l ++++           +++ ++   + + +d+++ + +   ++++l v+dg+  e e
  KKY15501.1 295 VLVCGPPGGGKTHLVREYvwSHAENYpgGIFWIDAKSEESRLKSFWDIvqvassiGSADFEDERSFGQSNFVDTIRIWLE--SKQNWLmVLDGVSIESE 391
                 79*************99844333355976666666666555555555577777776667777777777777777777754..44444468888888888 PP

      AAA_18  88 seaakdikk........v 97 
                 + +++++k+        +
  KKY15501.1 392 EIMQRFRKFipdctggfI 409
                 887777776555555554 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00021      0.37      49      64 ..     294     309 ..     265     316 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00021
   IstB_IS21  49 nivllGpsGvGKshla 64 
                 +++++Gp+G GK+hl 
  KKY15501.1 294 AVLVCGPPGGGKTHLV 309
                 5789**********95 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.35   6.2e+02      64      94 ..      87     117 ..      61     149 .. 0.80
   2 ?    8.2   0.0   0.00094       1.7       3      23 ..     295     316 ..     293     325 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.35
                 HCTT-HHHHHHHHHHHHTT-SEEEEEECTTT CS
        cobW  64 tlredllkelealeereerldviliEttGla 94 
                 ++++ +   +++l++++++++++++E  G  
  KKY15501.1  87 KIHNHAEHLAAQLAANRGNINRLFVEIIGRF 117
                 566677777888999999********98855 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00094
                 EEEEESTTCCHHHHHHHHH.CT CS
        cobW   3 tvltGflGsGKTtLlnhll.en 23 
                 ++++G++G GKT L+++++ ++
  KKY15501.1 295 VLVCGPPGGGKTHLVREYVwSH 316
                 789*************998533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.52
# Mc/sec: 3682.46
//
Query:       KKY15502.1  [L=437]
Description: putative mitochondrial cytochrome c oxidase assembly factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-71  238.4   0.0    1.3e-70  237.9   0.0    1.2  1  GatB_N     GatB/GatE catalytic domain
    6.2e-23   81.3   0.2    1.3e-22   80.2   0.2    1.5  1  GatB_Yqey  GatB domain


Domain annotation for each model (and alignments):
>> GatB_N  GatB/GatE catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.9   0.0   1.4e-74   1.3e-70      71     272 ..       2     226 ..       1     227 [. 0.94

  Alignments for each domain:
  == domain 1  score: 237.9 bits;  conditional E-value: 1.4e-74
                 E-EEEEE-TCTTCTTSEEEEESSS.SEEEEEEEE.......TEEEEEEEEEEEE---EEEEEETTEEEEETTSTT-EEEEEEE-STB-SHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      GatB_N  71 skfdRKnyfypdlpkgyQitqkeeplakeGslel.......ekkvrierihlEeDaaksvheekeeslvdlnRaGvpLiEivtepdlrspeearavvek 162
                 s+fdRK+yfy d+p+gyQitq++eplak+G l l       e+++ i++i++E+D++ks +++  ++l+d+nRaG pLiEi++ p+++spe a+a+v+k
  KKY15502.1   2 SRFDRKHYFYHDQPAGYQITQYYEPLAKNGCLALgpddgveEQDIAIKQIQIEQDTGKSQESDG-MHLIDFNRAGHPLIEIISLPQIHSPEAASAYVKK 99 
                 79**************************************999*****************9877.********************************** PP

                 HHHHHHHHTSB--SGGGTTEEEEEEEEECTSE........TTSSS..--EEEEEE-SHHHHHHHHHHHHHHHHHHH.......-EEEEEETTT.TEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxx.xxxxx RF
      GatB_N 163 lrellralgvsdgnmeeGslRcDvNvSvreee........kgeee.gtrvEiKnlnslksiekaieyeierqiell.......qeTrkfdedk.getvs 244
                 +++ll ++++++++me+G lR+DvNvS+++++        +g +  g+r+EiKnl+++k++e+ai++e  rqi++l        eTr+++ ++ +et++
  KKY15502.1 100 VQALLLSVNAVTAGMEQGGLRADVNVSISRKDgsagnhsySGISGlGQRTEIKNLSTIKAVEDAIKAEKARQISVLeaggvvdGETRGWSLARpNETRR 198
                 *****************************885566655442333379******************************************9766499*** PP

                 ECC----...-EEE-TTS--EE--HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      GatB_N 245 lRskeeaedYryfpepdlppleiseeli 272
                 lR ke + dYry+p+pd+ppl ++++l+
  KKY15502.1 199 LRGKEGEVDYRYMPDPDVPPLYVNDDLV 226
                 ************************9987 PP

>> GatB_Yqey  GatB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.2   1.5e-26   1.3e-22      13     147 ..     290     428 ..     277     429 .. 0.92

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 1.5e-26
                 HHHHHHHHHTCHHHHHHHHTXXTTCSSTTHHHHHHHHHHHHTTSSGHHHHHHHHHHHHHH.TXXHHHHHHHCTXXXXX.XSSXHHHHHHHHHHTXHHHH CS
   GatB_Yqey  13 aklaanwllnellgelnkegleieelkltpeqlaellkliaegkIskkiakevleellee.gkspeeiieekgLkqis.deeeleklveeviaenpkav 109
                  + +anw+l+e+   l  +++++e+++l p++la ll+ + + ++++ +ak++l  l+++ ++s+ +i+ee+gL+ ++  e+   +l eev+a ++ +v
  KKY15502.1 290 GRVVANWILQETGHMLTTKNITWEDSRLIPNNLASLLDVLLKRNVTGGSAKQILGLLIDGdERSVGQIVEEEGLRLVQlAEHDYVRLAEEVVASHSVVV 388
                 789********************************************************99**************99998899999************* PP

                 HHHTTXXT.TSTHHHHHHHHHT.TSSXSXHHHHHHHHHHH CS
   GatB_Yqey 110 edyksgke.kalkflvGqvMkk.tkGkadpklvnellkek 147
                 e+++++ +   l flvGq+ ++  +G++++k+++e l++ 
  KKY15502.1 389 EEIEKRGKmGKLMFLVGQMIRRgPEGRVEAKKAEETLRQL 428
                 ***876555***********99789************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 2665.94
//
Query:       KKY15503.1  [L=324]
Description: putative arginase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-78  262.7   0.4    4.7e-78  262.5   0.4    1.0  1  Arginase  Arginase family


Domain annotation for each model (and alignments):
>> Arginase  Arginase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.5   0.4   2.6e-82   4.7e-78       3     279 ..      18     319 ..      16     320 .. 0.90

  Alignments for each domain:
  == domain 1  score: 262.5 bits;  conditional E-value: 2.6e-82
                 EEEEEEE--TTTSSSGGGGGHHHHHHHHHHTSB.T.HCHEETTTTESCCSEEEEEEEEE--..........SSCHHHHHHHHHHHHHHHHHTTCEEEEE CS
    Arginase   3 vallGvPfdaagsgrpGarfGPraireasarle.e.aleynlelgvleelkivdlgdvavt..........pvdneevleqieeavaeilkagklpivl 89 
                 ++++ v f++ g+ +pG++ +P+a+ +a    + + +l+y l+++     k++ + +v  +          p   + v+++++++v+e ++ g+l+++l
  KKY15503.1  18 LGVVAVGFSG-GQCKPGVDAAPTALIQAGLLEQlQdDLGYTLQHD----DKVHAYAEVMPErdpvyrnmkkPLAVSAVTQKLSQQVYEKAAGGRLVLTL 111
                 68999*****.*****************65555656788888777....44444444433344555555444455556********************* PP

                 ESSGGGHHHHHHHHHHHH....STTEEEEEESSS----SSCTTTBSSSTTSHHHH...............HHHHTSECGCEEEEEEE-STCSHHHHHHH CS
    Arginase  90 GGDHsialgilralaeky....gkplgvihfDAHaDlrtpetegsgnshGtpfrr...............aaeegllkpkklvqiGirsvdneeyelak 169
                 GGDHsia+g++++ a+++    g++++vi++DAHaD++tpet++sgn hG+p+++                 e++l++++klv+iG+r+vd++e+++++
  KKY15503.1 112 GGDHSIAIGTISGTAKAMrerlGRDIAVIWVDAHADINTPETSESGNIHGMPVAFltglatserddifgwLKEDQLISTNKLVYIGLRDVDRGEKQILR 210
                 ****************99999999*********************************************555569************************ PP

                 HTTSEEEEHHHHHHHHHHHHHHHHHHHHTCTTSEEEEEEEGGGBBTTTSTSSSS-BSS-B-HHHHHHHHHHHHCHSEEEEEEEE-B-GGGSSTT.THHH CS
    Arginase 170 elgirvitmreidelglkavveeilervgaeedpvylSfDiDvlDpavaPGtGtpepgGltlrellallrelaeklnlvgaDvvEvnPaldtea.eqta 267
                 e+gi++++m++id++g+ +v+e++l+++g +++p++lSfD+D+lDp++aP+tGtp++gGltlre   + + ++e+++l+++D+vEvnP+l++++ ++t 
  KKY15503.1 211 EHGIKAFSMHDIDRHGIGRVMEMALAHIG-SDTPIHLSFDVDALDPQWAPSTGTPVRGGLTLREGDFIAECVHETGQLIAMDLVEVNPSLEIKGaSETI 308
                 ****************************8.669***********************************************************87899** PP

                 HHHHHHHHHHHH CS
    Arginase 268 rlaarlvrelll 279
                 r++++lvr++ l
  KKY15503.1 309 RAGCSLVRCA-L 319
                 *******995.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2144.37
//
Query:       KKY15504.1  [L=463]
Description: hypothetical protein UCRPC4_g06307 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
        2.2    8.2   9.0        4.5    7.2   4.9    2.4  2  Pol_alpha_B_N  DNA polymerase alpha subunit B N-terminal


Domain annotation for each model (and alignments):
>> Pol_alpha_B_N  DNA polymerase alpha subunit B N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.9   0.00025       4.5      54     164 ..      64     172 ..      19     187 .. 0.56
   2 ?    2.8   0.2    0.0054        96      82     178 ..     209     321 ..     162     333 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00025
                    XXXXXXXXXXXXXXXXXXX..XXXX........XXXX...XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX..XXXX CS
  Pol_alpha_B_N  54 dqlekraksskkpktekks.aaatpraaakngdlfgmldglipstpalkkrklss.akrksafetpsrskssssklefsspeasktpasaekkses 147
                    ++l++   ss + + ++ + a++tp +++++ d+f++ld    s   +++++++s + + s+ +++  +++ s+  +++ p++++++    ++ + 
     KKY15504.1  64 NKLKT---SSLSYTEAADNpANNTPAEQEHSVDVFQFLDTW-ESRAGSRAASQHSlVTESSQRSSTIPETQPSHFIPYEIPPEQSETFAERENPAH 155
                    33333...233334444444799997777777******953.444444444444332222333333333334444444444444443333333333 PP

                    XXXX....XXXXXXXXX CS
  Pol_alpha_B_N 148 seglpsvsfsdrqnpge 164
                     ++   +++++  n++ 
     KKY15504.1 156 DDDDGVSEMKEELNKDS 172
                    33334445555544444 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.0054
                    ....XXXX...X.XXXXXXXXXXXXXX...XXXXXXXXXXXXXXX.XXXXXXXXXXX.XXXXXXX..XXXXXXXX....XXXXXXXXX........ CS
  Pol_alpha_B_N  82 kngdlfgmldgl.ipstpalkkrklss...akrksafetpsrsks.sssklefsspeasktpasaekksesseglpsvsfsdrqnpge........ 164
                    +++  fg++d++ ip t   +   +ss   ++  ++f   ++s++ + + l+ +s  a++t+  +e   +s  ++ ++s+ d++ pg+        
     KKY15504.1 209 EKSPHFGVMDSVrIPGTVDDSFGGQSSplsVEDAESFYREASSSPsAYQYLR-NSNLAKSTKRAQEAGVSSVIHAGDTSVGDKKRPGNttyrrfer 303
                    3445677777766777776533333334543333333333333330333333.4444444433333333333444688888888885555666666 PP

                    ....XXXXXXXXXXXXXX CS
  Pol_alpha_B_N 165 ....iletLNehlelaeg 178
                        +l++L ++l+  e+
     KKY15504.1 304 lnrkVLDSLQDELNYLEK 321
                    666699999988887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.50
# Mc/sec: 2810.34
//
Query:       KKY15505.1  [L=816]
Description: hypothetical protein UCRPC4_g06308 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.045   14.3   1.9      0.061   13.9   0.1    2.2  2  FlgT_N    Flagellar assembly protein T, N-terminal domain
       0.16   11.0   3.1       0.16   11.0   1.0    1.9  2  COG4      COG4 transport protein


Domain annotation for each model (and alignments):
>> FlgT_N  Flagellar assembly protein T, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   6.8e-06     0.061       6      56 ..     125     173 ..     123     185 .. 0.86
   2 ?   -3.7   0.2         2   1.8e+04      40      56 ..     487     503 ..     479     516 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.8e-06
      FlgT_N   6 qGeAsIinnddiAreqAredAlkqAllyagaqvgsisslqqllegsltetq 56 
                 +G+A+  +n+d ++++A+++Al++  l  ++++++i+s++++++    et 
  KKY15505.1 125 NGHAA--QNGDDTQREALKNALSKFTLERSLRSRKIKSEDDTVDTTNLETV 173
                 69995..67777777**************************9999887765 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2
      FlgT_N  40 sisslqqllegsltetq 56 
                 s +s+ ++++g+++  +
  KKY15505.1 487 SSQSTGKVVNGEQEAFS 503
                 56677777777765544 PP

>> COG4  COG4 transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.13   1.2e+03     302     325 ..      96     119 ..      92     122 .. 0.86
   2 ?   11.0   1.0   1.8e-05      0.16     166     236 ..     441     507 ..     393     528 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.13
        COG4 302 ralstgsvdvvsavvnavkrvles 325
                   ++tgs ++ +avvn + ++l+ 
  KKY15505.1  96 LRIETGSYQSTEAVVNDIQTLLDH 119
                 5689****************9986 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 1.8e-05
        COG4 166 eaaaasaktsnesseeeegvdpreidalleEislmlsrwelYsrFlaskl......eeeeeeeeeeeqeeelelpdl 236
                 e+ ++ + t+ e+++e+++ d +++d+lleEis  l+  ++Y +  +s +      +          ++e  + p++
  KKY15505.1 441 ESFNT-DGTEPEQADEQKASDDKDLDELLEEISDHLKTLSSYQKLRQSSQstgkvvN---------GEQEAFSTPTS 507
                 33333.3456777888889999***********************999995444432.........22222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (816 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1039  (0.0579508); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 5080.97
//
Query:       KKY15506.1  [L=840]
Description: hypothetical protein UCRPC4_g06309 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.21   12.2   1.8         44    4.8   0.0    3.9  5  PrmC_N    PrmC N-terminal domain


Domain annotation for each model (and alignments):
>> PrmC_N  PrmC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       0.1   1.8e+03      44      63 ..      60      79 ..      53      83 .. 0.84
   2 ?    3.3   0.1    0.0068   1.2e+02      37      63 ..      90     116 ..      80     117 .. 0.91
   3 ?   -3.2   0.0      0.74   1.3e+04      34      61 ..     178     205 ..     151     207 .. 0.62
   4 ?   -2.8   0.0      0.58     1e+04      39      62 ..     374     400 ..     356     402 .. 0.63
   5 ?    4.8   0.0    0.0024        44      27      67 ..     607     648 ..     601     651 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.1
      PrmC_N 44 elteeqlerfeelierRaar 63
                + ++e+++rf++ +++R a+
  KKY15506.1 60 QTSDEAVSRFTRFLQERNAG 79
                56899999******999775 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.0068
      PrmC_N  37 lllrgerelteeqlerfeelierRaar 63 
                 +++ g ++l+++ le ++e+  +R++r
  KKY15506.1  90 IFMLGAQKLSPQLLEHLQEYAWERCER 116
                 578999******************998 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.74
      PrmC_N  34 rsdlllrgerelteeqlerfeelierRa 61 
                 + ++l++++  lt+e ++ ++ + +r +
  KKY15506.1 178 QLSMLADQSGNLTPESARSLTFYFNRTL 205
                 3456777788888888888777777655 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 0.58
      PrmC_N  39 lrgerelteeq...lerfeelierRaa 62 
                 l+ e  l++++    + fe+l+er +a
  KKY15506.1 374 LEYEYSLPKDTspcPASFEALLERILA 400
                 555555555553335678888888776 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.0024
      PrmC_N  27 ahvlglsrs.dlllrgerelteeqlerfeelierRaarePlq 67 
                 ++++g+sr+ d+l +++r   + q   fe+l++r++a  P+ 
  KKY15506.1 607 EDITGWSRVkDILNHMQRVKLDPQPGMFEALCQRLCAIMPVK 648
                 7899****95666788888889**************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.50
# Mc/sec: 5022.55
//
Query:       KKY15507.1  [L=340]
Description: putative arsenite translocating atpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     2e-113  378.6   0.0   2.3e-113  378.4   0.0    1.0  1  ArsA_ATPase  Anion-transporting ATPase
    1.2e-14   54.6   0.2    4.7e-13   49.4   0.0    2.5  2  AAA_31       AAA domain
    5.7e-12   45.8   0.0    9.8e-12   45.1   0.0    1.6  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
      2e-06   27.5   0.0    3.9e-06   26.5   0.0    1.5  1  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif
    9.7e-06   25.3   0.3    0.00098   18.8   0.1    2.5  3  SRP54        SRP54-type protein, GTPase domain
    1.6e-05   24.5   0.8    0.00022   20.7   0.1    2.3  2  ParA         NUBPL iron-transfer P-loop NTPase
    0.00012   21.6   0.0    0.00043   19.8   0.0    1.8  2  CBP_BcsQ     Cellulose biosynthesis protein BcsQ
  ------ inclusion threshold ------
      0.013   15.1   0.4      0.038   13.5   0.4    2.0  1  AAA_25       AAA domain
      0.032   13.4   0.0      0.065   12.4   0.0    1.5  1  NB-ARC       NB-ARC domain
      0.067   12.5   0.0       0.11   11.7   0.0    1.3  1  Zeta_toxin   Zeta toxin
      0.082   12.3   0.0       0.23   10.9   0.0    1.7  2  PhoH         PhoH-like protein
        0.1   13.2   0.1       0.52   10.9   0.0    2.1  2  AAA_18       AAA domain
       0.13   11.6   0.2        0.4   10.0   0.0    1.8  2  ATPase       KaiC
       0.27   11.0   0.7          3    7.5   0.2    2.6  2  AAA_24       AAA domain


Domain annotation for each model (and alignments):
>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.4   0.0  1.8e-116  2.3e-113       2     304 ..      26     333 ..      25     334 .. 0.95

  Alignments for each domain:
  == domain 1  score: 378.4 bits;  conditional E-value: 1.8e-116
                  EEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-STTTHHHHHHTS--BSS-EEET..SSEEEEE--HHHHHHHHHCCHHGGGSCCH.HHHHHHHH CS
  ArsA_ATPase   2 kvilvgGKGGVGKttvsaatavklsekgkkvllistDPAhslsDsfdqklgkeptkvk..eNLsavEidpeveleeakqevqkeeeall.gleeledv 96 
                  ++i+vgGKGGVGKtt s+++a+++++ +k+vllistDPAh+lsD+f+qk+gk+++ v+   NLsa+Eidp+  ++    +  +++++ + gl ++ ++
   KKY15507.1  26 RWIFVGGKGGVGKTTTSCSLAIQMAKVRKSVLLISTDPAHNLSDAFSQKFGKDARLVEgfTNLSAMEIDPNGSINDFIAAGGDQADDAMaGLGGMGGM 123
                  9*************************************************************************99988877666655548999**** PP

                  HHHHHTSSTTHHHHHHHHHHHHHHHCSSSSEEEEESBSCCHTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSH..CHHHHHHHHHHHHHHHHH CS
  ArsA_ATPase  97 laeelaslPGideilsfeellkyvkeeeydvvvlDtaPTGhtlrllslpevleklleklvklkeklsplakqlvkllg..lggvsieealeeleetke 192
                  +++ + s+PGide++sf+e+lk vk+  y+v+++DtaPTGhtlr+l++p+vlek l k+ +l  +++p+++++ +  g   gg+++++  +++e+  e
   KKY15507.1 124 MQDLAFSIPGIDEAMSFAEVLKQVKSLSYEVIIFDTAPTGHTLRFLQFPTVLEKALAKISQLSSQFGPMLNSVLGARGglPGGQNLDDLTQKMETLRE 221
                  *************************************************************************88765224788899*********** PP

                  HHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEE.E-TTCSSSTSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEE--SS- CS
  ArsA_ATPase 193 eikkveeiltdpertsfrlVvipEklslkEteRaikeLkkygikvdavivNk.llpeeeqenCeflearkkiqkkylkeieelfedlevvklplleeE 289
                  +i +v++++++p++t+f++V+i+E+lsl+EteR+i+eL++y+i+++ ++vN+ l+p +++ +C+ ++ar+k+qkkyl++ieel+++++vv++pll eE
   KKY15507.1 222 TIGEVNQQFKNPDMTTFVCVCIAEFLSLYETERMIQELASYQIDTHCIVVNQlLFPKDDN-PCQQCNARRKMQKKYLDQIEELYDEFNVVRMPLLVEE 318
                  ****************************************************66666666.8************************************ PP

                  S-SHHHHHHHHHHHC CS
  ArsA_ATPase 290 vvGlekleklselly 304
                  v+G ekle++s++l+
   KKY15507.1 319 VRGKEKLESFSDMLV 333
                  ************996 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   3.7e-16   4.7e-13       8     128 ..      31     162 ..      27     168 .. 0.73
   2 ?    2.5   0.1     0.093   1.2e+02      66     119 ..     253     305 ..     209     313 .. 0.72

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 3.7e-16
      AAA_31   8 nqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQanattglgiekneiektlyevl.......i.eeknikeaiiktkvenldlipssidLaeaeielv 98 
                   KGGvGKTTts+ la  +ak  k vLl+  Dp  n++ +++ +k  ++ +l+e +       i  + +i++ i     +  d + +   + ++ ++l+
  KKY15507.1  31 GGKGGVGKTTTSCSLAIQMAKVRKSVLLISTDPAHNLSDAFS-QKFGKDARLVEGFtnlsameIdPNGSINDFIAAGGDQADDAMAGLGGMGGMMQDLA 128
                 56*************************************887.45555555544422222222657778888888666666677777666666666665 PP

      AAA_31  99 elekk...eeilkellekvkde.YDyiiiDcpPs 128
                            + e+l++vk+  Y +ii+D+ P+
  KKY15507.1 129 FSIPGideAMSFAEVLKQVKSLsYEVIIFDTAPT 162
                 444334336668********955**********7 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.093
      AAA_31  66 eknikeaiiktkvenldlipssidLaeaeielvelekkeeilkellekvkdeYD 119
                 e  i+e++   ++++  +++ ++ + + ++  ++ + ++++ k++l+++++ YD
  KKY15507.1 253 ERMIQELAS-YQIDTHCIVVNQLLFPKDDNPCQQCNARRKMQKKYLDQIEELYD 305
                 344444444.556666777777777777788888888899999*******9999 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   7.6e-15   9.8e-12       2      55 ..      28     158 ..      27     322 .. 0.76

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 7.6e-15
                 EEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCH...HTTEB-HHHH........................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx........................................... RF
        CbiA   2 aiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlai...leglendiep........................................... 54 
                 +++++kGGvGKTt++++La+ +a+ ++ Vll+ +Dp  n++      +g+     +                                           
  KKY15507.1  28 IFVGGKGGVGKTTTSCSLAIQMAKVRKSVLLISTDPAHNLSDAfsqKFGKDA---Rlvegftnlsameidpngsindfiaaggdqaddamaglggmggm 123
                 689**************************************98444333333...35669999999999999999999999999999999999999999 PP

                 ..................................C CS
                 ..................................x RF
        CbiA  55 ..................................d 55 
                                                   d
  KKY15507.1 124 mqdlafsipgideamsfaevlkqvkslsyeviifD 158
                 99999999955544444444444444444444440 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   3.1e-09   3.9e-06       3      41 ..      28      66 ..      26      87 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 3.1e-09
   Fer4_NifH  3 iaiyGkGGiGksttsqnlsaalaemgkkvlivGCDPkaD 41
                i + GkGG+Gk+tts+ l++ +a+  k vl++  DP ++
  KKY15507.1 28 IFVGGKGGVGKTTTSCSLAIQMAKVRKSVLLISTDPAHN 66
                6678********************************886 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   7.7e-07   0.00098       4      38 ..      28      62 ..      25      66 .. 0.86
   2 ?    4.0   0.0     0.027        35      67      92 ..     135     160 ..     119     183 .. 0.87
   3 ?   -4.0   0.0       7.4   9.5e+03      95     129 ..     290     324 ..     289     328 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 7.7e-07
                EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEES CS
       SRP54  4 illvGlqGaGKTttlaKLaallkkegkkvllvaaD 38
                i + G  G+GKTtt   La ++ k  k+vll+++D
  KKY15507.1 28 IFVGGKGGVGKTTTSCSLAIQMAKVRKSVLLISTD 62
                34445667*************************99 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.027
                 CHHHHHHHHHHHHHHTTSSEEEEEE- CS
       SRP54  67 dpaavakeavekakeekidvvlvDTa 92 
                 d+a   +e +++ k+ +++v++ DTa
  KKY15507.1 135 DEAMSFAEVLKQVKSLSYEVIIFDTA 160
                 56667788999**************9 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 7.4
                 STTHHHHHHHHHHHHHHHSSSEEEEEEETTBHTHH CS
       SRP54  95 lqndkelmeelkkikkvvkpdevllvldattgqea 129
                  + +k+++++++++ +  +  ++ l ++ + g+e+
  KKY15507.1 290 RKMQKKYLDQIEELYDEFNVVRMPLLVEEVRGKEK 324
                 56777788888888877777777777777777665 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   1.7e-07   0.00022       9      41 ..      30      62 ..      25      65 .. 0.89
   2 ?    1.5   0.1      0.13   1.6e+02     135     203 ..     234     306 ..     223     331 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.7e-07
        ParA  9 lSgKGGVGKStvavnlAlaLakkglkvgllDaD 41
                + gKGGVGK+t++++lA+++ak  ++v l+ +D
  KKY15507.1 30 VGGKGGVGKTTTSCSLAIQMAKVRKSVLLISTD 62
                57********************99999888766 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.13
        ParA 135 plagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgfv.....cpkcgekteifgkgggeklaeelgv 203
                 +++  v V   + ++l ++++ i+ + + +++   +v N   f      c++c+ + ++  k+  +++ e ++ 
  KKY15507.1 234 DMTTFVCVCIAEFLSLYETERMIQELASYQIDTHCIVVNQLLFPkddnpCQQCNARRKMQ-KKYLDQIEELYDE 306
                 6788999999999***********************999887752222256666665543.4444444444444 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   3.4e-07   0.00043       8      56 ..      31      79 ..      26      92 .. 0.89
   2 ?   -2.1   0.0       1.7   2.2e+03      25      41 ..     146     162 ..     135     190 .. 0.60

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.4e-07
    CBP_BcsQ  8 GvRGGvGttsllaaLawalhelgesvlviDlspdnlLrlhFnvdieqre 56
                G +GGvG+t+ + +La+++ ++++svl+i + p+  L   F++++ +++
  KKY15507.1 31 GGKGGVGKTTTSCSLAIQMAKVRKSVLLISTDPAHNLSDAFSQKFGKDA 79
                779***********************************99999987765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.7
    CBP_BcsQ  25 alhelgesvlviDlspd 41 
                 ++++l ++v++ D++p 
  KKY15507.1 146 QVKSLSYEVIIFDTAPT 162
                 34445555555555553 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4     3e-05     0.038      36      61 ..      28      53 ..       4     162 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3e-05
      AAA_25 36 allaGapgtGKttlaldlalavatGk 61
                + + G +g+GKtt  ++la+ +a+ +
  KKY15507.1 28 IFVGGKGGVGKTTTSCSLAIQMAKVR 53
                5789*******************755 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.1e-05     0.065       9      38 ..      16      43 ..       9      56 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.1e-05
                HHHHHCTTTSCSEEEEEEESTTSSHHHHHH CS
      NB-ARC  9 iekLlekdelqslvvalvGmgGvGKttlak 38
                 ++Ll +++l   ++++ G+gGvGKtt + 
  KKY15507.1 16 LQNLLDQKSLR--WIFVGGKGGVGKTTTSC 43
                45667688888..*************9765 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.8e-05      0.11      17      58 ..      26      68 ..      13      93 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.8e-05
  Zeta_toxin 17 klillgGqpGAGKselaellkdele.rqgnvvrldpDdlRelh 58
                  i++gG  G GK++++  l+ +++  +++v+ +++D   +l 
  KKY15507.1 26 RWIFVGGKGGVGKTTTSCSLAIQMAkVRKSVLLISTDPAHNLS 68
                579**************99999999678888888888766665 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00018      0.23      20      60 ..      26      66 ..      13      82 .. 0.83
   2 ?   -3.0   0.0       3.1     4e+03       4      18 ..     288     302 ..     286     310 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00018
                SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S-- CS
        PhoH 20 divfaiGpaGtGKtylavalavealkkkkvkriiltrpave 60
                  +f+ G+ G GKt  +++la+++ k +k   +i t pa +
  KKY15507.1 26 RWIFVGGKGGVGKTTTSCSLAIQMAKVRKSVLLISTDPAHN 66
                368999********************999998988888765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.1
                 --SHHHHHHHHHHHH CS
        PhoH   4 pktkeQkeylealkk 18 
                 ++ k Qk+yl+++++
  KKY15507.1 288 ARRKMQKKYLDQIEE 302
                 677899999999873 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00041      0.52       1      44 [.      28      74 ..      28     104 .. 0.73
   2 ?   -0.7   0.0       1.6     2e+03      35      85 ..     272     322 ..     253     337 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00041
      AAA_18  1 IlltGtpGvGKttlakeLskrl.gf..gvnlrdvakenglllevdpe 44
                I++ G+ GvGKtt +  L+  + ++  +v l+++ + ++l++ + ++
  KKY15507.1 28 IFVGGKGGVGKTTTSCSLAIQMaKVrkSVLLISTDPAHNLSDAFSQK 74
                99*************99977764556666666666666666665555 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.6
      AAA_18  35 nglllevdpe...aldeskrldedkldklldaleenssaleegknlvidghlae 85 
                 n+ll++ d++   + +  +++++++ld++ ++ +e +       +l+++ ++++
  KKY15507.1 272 NQLLFPKDDNpcqQCNARRKMQKKYLDQIEELYDEFN---VVRMPLLVEEVRGK 322
                 5666666666454444555555555544444444433...33445555555554 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00031       0.4      20      79 ..      26      84 ..      14     138 .. 0.83
   2 ?   -1.3   0.1      0.89   1.1e+03     134     177 ..     213     260 ..     207     275 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00031
      ATPase 20 rvvlitGepGtGKtifalqFlikgaekygepgvfvtveepaedlrenak.slGwdleklee 79
                r + + G+ G GKt+ +   +i+ a+   + +++++++   ++l   ++ ++G d + +e 
  KKY15507.1 26 RWIFVGGKGGVGKTTTSCSLAIQMAKV-RKSVLLISTDPA-HNLSDAFSqKFGKDARLVEG 84
                678899*****************9888.999*****9855.55555554389988876665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.89
      ATPase 134 eekeavaReilrqlvrvlkklgvTailvsekss....seeaaggygve 177
                 ++k +++Re++ ++ +++k+ ++T+     + +     e++   ++++
  KKY15507.1 213 TQKMETLRETIGEVNQQFKNPDMTTFVCVCIAEflslYETERMIQELA 260
                 566677888888888888888888865444444444544444455555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.2    0.0023         3       5      33 ..      28      63 ..      26     162 .. 0.77
   2 ?    0.2   0.0      0.42   5.4e+02     112     166 ..     253     306 ..     249     324 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0023
      AAA_24  5 iliyGpsgiGKTtlakel.......gpkplfidtek 33
                i++ G+ g+GKTt+  +l        +++l+i t+ 
  KKY15507.1 28 IFVGGKGGVGKTTTSCSLaiqmakvRKSVLLISTDP 63
                6778*********99999899999999999998886 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.42
      AAA_24 112 rrllkklqelrk..nvifiahektrkdedpegeakytrlepklgkktanelkeevDl 166
                  r+++ l +++   + i++  +   kd++p ++      + k++kk  ++++e  D+
  KKY15507.1 253 ERMIQELASYQIdtHCIVVNQLLFPKDDNPCQQ---CNARRKMQKKYLDQIEELYDE 306
                 566677766666778888888888999999555...788999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      677  (0.0377601); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.64u 0.34s 00:00:00.98 Elapsed: 00:00:00.53
# Mc/sec: 1914.43
//
Query:       KKY15508.1  [L=136]
Description: putative transthyretin domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-34  118.3   0.0      3e-34  118.0   0.0    1.1  1  Transthyretin  HIUase/Transthyretin family


Domain annotation for each model (and alignments):
>> Transthyretin  HIUase/Transthyretin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.0   1.7e-38     3e-34       1     110 []       5     135 ..       5     135 .. 0.89

  Alignments for each domain:
  == domain 1  score: 118.0 bits;  conditional E-value: 1.7e-38
                    EEEEEEETTTTEE-TS-EEEEEEECTTSS.........EEEEEEEEE--TTSCESSSSEE...........GCGB-SEEEEEEEEHHHHHHHTTS. CS
  Transthyretin   1 itthvLdttaGkpaagvevelekleesee.........eaellaesttdadGrvkellae...........keeleagtyklrfeteeYfekegte 76 
                    it+hvL+t +G+paag++ +l+ +++  +         +  l ++stt++dGrvke++++            ++ e++ ++++f+++e++ek+g+e
     KKY15508.1   5 ITCHVLNTLNGTPAAGISATLTLISPLPSqeasapstaSPLLAFTSTTNEDGRVKEWTPStsrtlqdvislYKDGEKTAWSIKFNVGEWYEKQGVE 100
                    8*********************999876655666665444488999*************9888888888877777777****************** PP

                    .SESCEEEEEEES.TTSEEEEEEEEETTEEEEE-B CS
  Transthyretin  77 sffpevevvfevk.eeehyhvPlllspfgYstYrG 110
                    +f+pevev+f vk  e+hyhvP+l++p++Y+tYrG
     KKY15508.1 101 AFWPEVEVKFYVKkGERHYHVPVLVGPWTYTTYRG 135
                    *************555******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.33s 00:00:00.79 Elapsed: 00:00:00.51
# Mc/sec: 806.10
//
Query:       KKY15509.1  [L=436]
Description: putative c2h2 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-09   37.8  17.7     0.0015   18.9   5.9    3.5  3  zf-C2H2     Zinc finger, C2H2 type
    1.4e-06   28.4  14.2     0.0025   18.1   2.2    4.0  4  zf-H2C2_2   Zinc-finger double domain
    1.5e-06   28.6  16.4      0.012   16.4   5.1    3.6  3  zf-C2H2_4   C2H2-type zinc finger
  ------ inclusion threshold ------
       0.58   10.0  14.1       0.26   11.1   2.6    3.1  3  zf-C2H2_11  zinc-finger C2H2-type
       0.75    9.9   4.3        2.2    8.4   4.3    1.8  1  AT_hook     AT hook motif


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.4   7.8e-07    0.0028       2      23 .]     144     167 ..     143     167 .. 0.96
   2 !   18.9   5.9   4.1e-07    0.0015       1      23 []     173     195 ..     173     195 .. 0.98
   3 !    8.1   0.2    0.0011       4.1       6      21 ..     205     220 ..     202     221 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 7.8e-07
                 EET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   2 kCp..dCgksFkrksnLkrHirtH 23 
                 +C+  dC+k+F rk+n k+H +tH
  KKY15509.1 144 VCKyeDCDKRFGRKENIKSHVQTH 167
                 79999******************9 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 4.1e-07
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 +kC++Cgk+F r ++LkrH ++H
  KKY15509.1 173 FKCDHCGKCFVRGHDLKRHAKIH 195
                 8********************99 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0011
                 TTEEESSHHHHHHHHH CS
     zf-C2H2   6 CgksFkrksnLkrHir 21 
                 Cg  F r + L+rH++
  KKY15509.1 205 CGNAFARHDALTRHRQ 220
                 **************97 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.051   1.8e+02      12      25 ..     140     155 ..     135     156 .. 0.78
   2 !   18.1   2.2   7.1e-07    0.0025       3      25 ..     161     183 ..     159     184 .. 0.92
   3 !   14.4   0.1   1.1e-05     0.039       1      17 [.     187     203 ..     187     211 .. 0.86
   4 ?   -3.6   0.1         5   1.8e+04       1       6 [.     214     219 ..     214     220 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.051
   zf-H2C2_2  12 ekpyeCp..lCdkaFk 25 
                 ++++ C+   Cdk+F 
  KKY15509.1 140 DNKWVCKyeDCDKRFG 155
                 5667899878*****7 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 7.1e-07
   zf-H2C2_2   3 rrHirkHtgekpyeCplCdkaFk 25 
                 + H  +H g++ ++C+ C+k F+
  KKY15509.1 161 KSHVQTHLGDRQFKCDHCGKCFV 183
                 78********************8 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 1.1e-05
   zf-H2C2_2   1 nLrrHirkHtgekpyeC 17 
                 +L+rH + H g kpy C
  KKY15509.1 187 DLKRHAKIHSGAKPYPC 203
                 69*************** PP

  == domain 4  score: -3.6 bits;  conditional E-value: 5
   zf-H2C2_2   1 nLrrHi 6  
                 +L+rH 
  KKY15509.1 214 ALTRHR 219
                 699**6 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.3    0.0001      0.36       2      23 ..     144     167 ..     143     168 .. 0.93
   2 !   16.4   5.1   3.4e-06     0.012       1      23 [.     173     195 ..     173     196 .. 0.96
   3 !    7.2   0.2     0.003        11       1      21 [.     201     220 ..     201     221 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0001
   zf-C2H2_4   2 kCpi..CgksFsskkaLlrHlkth 23 
                  C++  C+k+F +k+++++H++th
  KKY15509.1 144 VCKYedCDKRFGRKENIKSHVQTH 167
                 699999*****************9 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 3.4e-06
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 fkC++Cgk F + ++L+rH k h
  KKY15509.1 173 FKCDHCGKCFVRGHDLKRHAKIH 195
                 8********************99 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.003
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlk 21 
                 ++C +Cg  F +++aL rH +
  KKY15509.1 201 YPC-LCGNAFARHDALTRHRQ 220
                 567.9**************86 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.6   7.3e-05      0.26       5      26 ..     173     194 ..     172     195 .. 0.92
   2 ?    6.2   0.4    0.0024       8.6       8      25 ..     203     220 ..     203     220 .. 0.93
   3 ?   -2.6   0.2       1.3   4.8e+03      12      19 ..     377     384 ..     376     384 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.3e-05
  zf-C2H2_11   5 cqCleCGlcftSqlsLsRHlfI 26 
                 ++C +CG cf     L+RH  I
  KKY15509.1 173 FKCDHCGKCFVRGHDLKRHAKI 194
                 59*****************877 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0024
  zf-C2H2_11   8 leCGlcftSqlsLsRHlf 25 
                 ++CG  f+ + +L RH++
  KKY15509.1 203 CLCGNAFARHDALTRHRQ 220
                 68**************96 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.3
  zf-C2H2_11  12 lcftSqls 19 
                 lc +S+++
  KKY15509.1 377 LCHSSSPM 384
                 8****987 PP

>> AT_hook  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   4.3   0.00062       2.2       3      12 ..     237     246 ..     237     247 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00062
     AT_hook   3 kRGRPrKaat 12 
                 kRGRPrK+++
  KKY15509.1 237 KRGRPRKHRP 246
                 8******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.34s 00:00:01.02 Elapsed: 00:00:00.58
# Mc/sec: 2278.02
//
Query:       KKY15510.1  [L=154]
Description: putative ubiquitin-40s ribosomal protein s31 fusion protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-34  116.0   0.6    7.9e-34  115.2   0.6    1.4  1  ubiquitin      Ubiquitin family
    4.2e-27   94.0   1.7    4.2e-27   94.0   1.7    2.0  2  Ribosomal_S27  Ribosomal protein S27a
    2.6e-16   59.2   0.7    4.9e-16   58.3   0.7    1.4  1  Rad60-SLD      Ubiquitin-2 like Rad60 SUMO-like
    2.8e-05   24.5   0.4    0.00013   22.4   0.1    2.1  2  Ubiquitin_2    Ubiquitin-like domain
     0.0012   19.0   0.6     0.0026   17.8   0.6    1.6  1  Rad60-SLD_2    Ubiquitin-2 like Rad60 SUMO-like
     0.0047   17.2   0.9     0.0079   16.5   0.0    1.7  2  Ubiquitin_5    Ubiquitin-like domain
     0.0054   16.6   0.0     0.0082   16.1   0.0    1.3  1  TBK1_ULD       TANK binding kinase 1 ubiquitin-like domain
     0.0094   16.2   0.3      0.016   15.5   0.3    1.4  1  IBR            IBR domain, a half RING-finger domain
  ------ inclusion threshold ------
      0.013   16.1   0.7      0.019   15.6   0.7    1.2  1  DUF2407        DUF2407 ubiquitin-like domain
      0.021   14.9   1.0        5.9    7.0   0.2    2.4  2  Ubiquitin_4    Ubiquitin-like domain


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2   0.6   4.4e-37   7.9e-34       1      72 []       3      74 ..       3      74 .. 0.99

  Alignments for each domain:
  == domain 1  score: 115.2 bits;  conditional E-value: 4.4e-37
                EEEEETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESSC CS
   ubiquitin  1 itvktldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrlr 72
                i+vktl+gk+itleve+sdt++++K ki++kegip++qqrLi++Gk+Led rtl++y+iq++stlhlvlrlr
  KKY15510.1  3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
                9********************************************************************986 PP

>> Ribosomal_S27  Ribosomal protein S27a
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.3         2   3.6e+03      11      19 ..      89      97 ..      83      99 .. 0.77
   2 !   94.0   1.7   2.3e-30   4.2e-27       1      45 []     102     147 ..     102     147 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2
                   SSEEESS-B CS
  Ribosomal_S27 11 gkverlrke 19
                   +k++++rk+
     KKY15510.1 89 KKIKHKRKK 97
                   799999986 PP

  == domain 2  score: 94.0 bits;  conditional E-value: 2.3e-30
                    SSSSCCESSSSSEEESS-B-SS-.S-TTSBEEECTTEEEESSTTTE CS
  Ribosomal_S27   1 vlkyYkvddsgkverlrkeCpre.CGaGvfMAehkdRkyCGkCglT 45 
                    vlkyYkvd++gk+erlr+eCp++ CGaGvfMA++++R+yCGkC+lT
     KKY15510.1 102 VLKYYKVDGDGKIERLRRECPTPeCGAGVFMASMQNRQYCGKCHLT 147
                    8********************************************9 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.7   2.7e-19   4.9e-16       1      72 []       1      71 [.       1      71 [. 0.98

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 2.7e-19
                EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEEX CS
   Rad60-SLD  1 ikiilkgkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvvi 72
                ++i++k+ +gk+++++V+++ t+ +++++ ++k+gip+ +++rLiF G++L++  t+ d+ i++++t+++v+
  KKY15510.1  1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
                89************************************.******************************986 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   7.1e-08   0.00013      16      80 ..      13      69 ..       2      70 .. 0.86
   2 ?   -3.2   0.0       6.6   1.2e+04      65      72 ..     101     108 ..      85     116 .. 0.61

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 7.1e-08
                 EEEEEETTSBHHHHHHHHHHHH---TTCEEEEEE.-SSSSEEECSSGCCSBCCCCT--TTEEEEE CS
  Ubiquitin_2 16 serrfsksltieelKekLelitGtspasmrLqlyddkkdnevsklddddalLgsYgvkdgmrihV 80
                  +  +++s+ti+++K+k++   G++p+++rL +          k  +d ++L++Y+++  +++h 
   KKY15510.1 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHL 69
                 55668899************************99........5667899*********9999995 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6.6
                  SBCCCCT- CS
  Ubiquitin_2  65 alLgsYgv 72 
                  a L++Y+v
   KKY15510.1 101 AVLKYYKV 108
                  34455544 PP

>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.6   1.5e-06    0.0026      16     100 ..      13      88 ..       2     100 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.5e-06
                  EEEEEETT-BHHHHHHHHHHHS-TT-SSS--SCCCEEEEETTEEE-TTSBCCCCS-TTTTTTTS-EEEEEEE---SS----.XX....X CS
  Rad60-SLD_2  16 gpvkfsdaatvaelkekviaqWPkdkeekpksvndlklilaGkiLennktlkelrlplgevkggvtvmHvvvrenlsekksekk....a 100
                    ++ ++++t++++k k+     +dke  p  +++ +li aGk Le+ +tl++++++        +++H+v+r     kk++kk     
   KKY15510.1  13 ITLEVESSDTIDNVKSKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STLHLVLRLRGGGKKRKKKvyttP 88 
                  556667777777777777.....4555533..34559*****************54433......579***999888888877764442 PP

>> Ubiquitin_5  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.4e-06    0.0079      34      93 ..      13      73 ..       5      78 .. 0.83
   2 ?   -0.7   0.2       1.1   1.9e+03      40      41 ..      89      90 ..      65     110 .. 0.52

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.4e-06
  Ubiquitin_5 34 klletkLdvtgkelvskiaeefglkensiKlilngklleldktLeeQgvknnskv.mvLkl 93
                  +le++ + t +++ ski ++ g+  ++ +li  gk+le ++tL + +++++s + +vL+l
   KKY15510.1 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLhLVLRL 73
                 5566666677889999999*****99***********************999875467765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.1
  Ubiquitin_5 40 Ld 41
                  +
   KKY15510.1 89 KK 90
                 22 PP

>> TBK1_ULD  TANK binding kinase 1 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.6e-06    0.0082      19      53 ..      17      51 ..       4      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.6e-06
    TBK1_ULD 19 ihpyntvaifqeevakqTkiaaekQellfeghrll 53
                +++ +t++++  +++++  i++++Q l+f g++l 
  KKY15510.1 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 51
                6789****************************973 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.3   8.7e-06     0.016      16      45 ..     116     145 ..      90     150 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 8.7e-06
         IBR  16 pnlkwCprpdCeaiieksegcksvtCskCg 45 
                 + ++ Cp+p+C+a +   + +++  C kC+
  KKY15510.1 116 RLRRECPTPECGAGVFMASMQNRQYCGKCH 145
                 3489********9998888878877*9997 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.7     1e-05     0.019      14      72 ..      13      87 ..       6     108 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1e-05
     DUF2407 14 leLdipdpntttvagLkqliRerlpaelasrrLrLIyaGrlLedttslasslklpees....................v 72
                ++L+++  ++ t+ ++k  i ++    +   + rLI+aG+ Led  +l++   ++e++                    +
  KKY15510.1 13 ITLEVE--SSDTIDNVKSKIQDKE--GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTlhlvlrlrgggkkrkkkvytT 87
                566666..6789999999999987..67777789**************9865555444577777776666544332221 PP

>> Ubiquitin_4  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.2    0.0033       5.9       1      32 [.       1      32 [.       1      36 [. 0.94
   2 ?    6.4   0.0    0.0051       9.1      58      86 ..      43      70 ..      39      73 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0033
  Ubiquitin_4  1 lkvtvkkldgeslevvvkqnatvkdLkkaier 32
                 +++ vk l g+++ ++v+++ t+ ++k  i+ 
   KKY15510.1  1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQD 32
                 7899*************************997 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0051
  Ubiquitin_4 58 LsfegekLkddkaklkeygirnkselsFv 86
                 L+f g++L+ d  +l++y i+++s+l+ v
   KKY15510.1 43 LIFAGKQLE-DGRTLSDYNIQKESTLHLV 70
                 889999986.6789************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1067  (0.0595125); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1018.00
//
Query:       KKY15511.1  [L=407]
Description: putative endochitinase 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-78  263.0   0.0    5.5e-78  262.9   0.0    1.0  1  Glyco_hydro_18  Glycosyl hydrolases family 18


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.9   0.0     3e-82   5.5e-78       2     310 ..       9     355 ..       8     357 .. 0.91

  Alignments for each domain:
  == domain 1  score: 262.9 bits;  conditional E-value: 3e-82
                     EEEEEEGGGGGSSG..C..SHTTTESEEEEEEEEEEETTTEEEESS.TTHH.................HHHHHHHHHHHHTSTT-EEEEEEEETT CS
                     xxxxxxxxxxxxxx..x..xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18   2 vvgYysswesygnn..y..lpsaklthiiyaFakidgengkvvvsd.wedl.................gnfeqlkklkkkknpgvkvllsiGGwt 74 
                      v+Y+ +w+ yg+n     lp +klthi+yaFa+i +++g+v +sd w+d+                 g+f+ql  lk  +n+++kv+l+iGGwt
      KKY15511.1   9 SVAYFVNWAIYGRNhnPqdLPVEKLTHINYAFANIRPDSGEVYLSDpWSDTdkhypsdswndqgrnlyGCFKQLYLLK-IRNRHLKVMLAIGGWT 102
                     699********7742435688*********************************************************.**************** PP

                     TTTHHHHHHTSHHHHHHHHHHHHHHHHHCT-SEEEEEES-TTTSTCHHHHHHHHHHHHHHHHHHHHH..HTSTTCEEEEEEESSHHHHHHHCHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18  75 dssgfslaastdasrkkfadsvvsllrkygfDGiDidweypggnpedkenytallkelrealdkaka..tegkkllLsaavpasasdlskgydlp 167
                     +ss+f++ ast++ r+ fa+++v+ll+++g+DGiD+dweyp+++  + e y +ll+++r++ld a++  ++  +++L +a pa++s+++k  dl+
      KKY15511.1 103 YSSNFAQPASTPQGRAHFAETAVKLLEDLGLDGIDLDWEYPKDQG-QVEDYIRLLAAIRAELDSASHrrSRPCHFELAIACPAGPSEYKKL-DLR 195
                     *****************************************8854.499**************55554466679*************9888.*** PP

                     HHHHHTSEEEEETTTSSSTTSSBE--SS-SSB.....T..CSSHHHHHHHHHHTT--GGGEEEEEESEEEEEEESSSSSS........TSTTTEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxx RF
  Glyco_hydro_18 168 kiakylDyvnvmtYDfhgswdnvtghhaplyd.....a..slnvdeavkeylkagvpakklvlGvpfygrawalvsgadn........tkeegvl 247
                     ++ +ylD+  +m+YDf gswd  +gh+a+l+      +   +++++av+ y + g+ ++k++lG+p ygra+++++g+++         +e+gv+
      KKY15511.1 196 AMDRYLDFWDLMAYDFAGSWDPIVGHQANLHPselrpNstPFSASAAVHWYTSHGIRPSKINLGMPLYGRAFTNTDGPGHsysgigegSWEQGVW 290
                     ******************************99877651679*******9899**********************99977799999999******* PP

                     EHHHHHHHHTEEEEEEEEETTTTE.EEEEETT..EEEEE-SHHHHHHHHHHHHHTTESEEEEETGG CS
                     xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 248 sykelkellkkakakrkydskaka.pyvydge..efvsyDdpksikakadyvkakglgGvmiWsld 310
                     +yk+l++  ++++ ++  d   +  ++ yd+   ++vsyD+p   + ka+yv+++glgG m+W+ +
      KKY15511.1 291 DYKALPRP-GAKEHHELGDRGGCCaSWSYDPAqrVLVSYDTPNITAGKARYVRHHGLGGGMWWESS 355
                     ******96.44444555555555558889999*******************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.51
# Mc/sec: 2397.94
//
Query:       KKY15512.1  [L=344]
Description: putative aldo-keto reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-65  220.0   0.0    4.1e-65  219.9   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.9   0.0   2.3e-69   4.1e-65       1     292 [.      22     334 ..      22     336 .. 0.96

  Alignments for each domain:
  == domain 1  score: 219.9 bits;  conditional E-value: 2.3e-69
                   .EEEE-SSS-ST.....TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE...............--SSSTTS CS
  Aldo_ket_red   1 elglGtwqlgsk....eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv...............dlrdaeik 78 
                   +++lG +++g++    ++ ++ee+l ll++a++ Gi+++DtA+vY +g+se ++ +a++k + +re+++i tK+               ++   +++
    KKY15512.1  22 KIILGCMSYGDPkwagWVLPEEESLPLLKAAYDSGITTWDTADVYSNGRSEMIVKKAIEKFQIPREKLVILTKCwglviednpglrisqPGPEWANQ 118
                   69*********9****************************************************************************777777788 PP

                   SSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT-HHH CS
  Aldo_ket_red  79 sglskeniresleeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynllrele 171
                    gls+++i  ++++s +rLgt y+D+l++Hr d +++  ee+++al+++v++Gk+r+iG S+  +     +         +++++ q+ ynl  ++e
    KKY15512.1 119 HGLSRKHILDAVDNSIRRLGT-YIDVLQIHRLDKDVE-AEEIMKALHDVVQSGKVRYIGGSSMYAHEFAILqftaTLNHWTPFISMQNFYNLAYREE 213
                   89******************6.***************.***********************88877777667778889999**************** PP

                   HTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------..TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SS CS
  Aldo_ket_red 172 eegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrd..ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasn 266
                   e++++++ckk gv+li++sp+++Gll + +++ +++   +++  ++++   + +  ++  ++++++ak++ vs+a +a+++ l   +++++i+g s+
    KKY15512.1 214 EREMIPFCKKTGVGLIPWSPIARGLLARPWDDRSSVRASGTDMLFNQFvkRESDIDREISKRVEKIAKDKEVSMANIAIAWTL--HKGTMPIVGLSS 308
                   **************************************9999999999998899999**************************..9*********** PP

                   HHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 267 ieqlednldalelklseeevaeldel 292
                   +e+++d ++al++k+se+e+++l+e+
    KKY15512.1 309 VERIHDAVKALSIKFSEDELKYLEEA 334
                   ***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2278.81
//
Query:       KKY15513.1  [L=314]
Description: putative ribonuclease t2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-29  103.5   0.4    3.7e-29  102.3   0.1    1.7  2  Ribonuclease_T2  Ribonuclease T2 family


Domain annotation for each model (and alignments):
>> Ribonuclease_T2  Ribonuclease T2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.1   2.1e-33   3.7e-29      66     175 ..       3     118 ..       1     133 [. 0.89
   2 ?   -1.7   0.0      0.16   2.8e+03      87      98 ..     207     218 ..     202     242 .. 0.74

  Alignments for each domain:
  == domain 1  score: 102.3 bits;  conditional E-value: 2.1e-33
                      GHHHHHHHS----SH..HHHHHHHHHTGGGGTT...T...S...-SH.HHHHHHHHHHHTT--HHHHHHHTT--S.SS-EEEHHHHHHHHHHHH CS
  Ribonuclease_T2  66 llaelnkyWpslikk..slwkhEwekHGtCaas.lpa...l...kse.hkYFqkalelrkkldlkkvLakagIvPsktksyslseikdalkkai 149
                      ll++++ yW++++ +  +lw+hEw+kHGtC+++ +++       ++e ++YF+k++el+k l+++ +L++agIvP+k+k+y+ +ei++al+  +
       KKY15513.1   3 LLSYMKIYWKDYQGSdpTLWSHEWNKHGTCVSTlETScyvDyvsQEEiVDYFEKTVELFKGLPTYYTLSDAGIVPDKSKTYTSDEIQSALEAMH 96 
                      899*********85589****************555565515545558********************************************** PP

                      SS--EEEEEE..--EEEEEEEEEEET CS
  Ribonuclease_T2 150 gvkpkieCskdskeqalsevelcldk 175
                      g+  +i+C++     +++ev++ +d 
       KKY15513.1  97 GAPVTIRCRN----GQFDEVWYHFDV 118
                      9999****97....99******9875 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.16
                      HHHTGGGGTT.. CS
  Ribonuclease_T2  87 wekHGtCaaslp 98 
                      w   GtCa+ ++
       KKY15513.1 207 WYTSGTCATYHA 218
                      89999**96533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2009.92
//
Query:       KKY15514.1  [L=212]
Description: putative family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-40  138.3   0.0    3.5e-40  137.9   0.0    1.1  1  DUF155    Uncharacterised ACR, YagE family COG1723


Domain annotation for each model (and alignments):
>> DUF155  Uncharacterised ACR, YagE family COG1723
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.9   0.0     2e-44   3.5e-40      43     176 .]       2     153 ..       1     153 [. 0.98

  Alignments for each domain:
  == domain 1  score: 137.9 bits;  conditional E-value: 2e-44
      DUF155  43 eteeleyvydeqsessrikgdvivlksk..............slleklaiShalaqSvkLdvlEesldellestekipkelakkgklklsrkellkktg 127
                 ete+leyv+d++++ s i+gd+i+l++k              s+l+k a+S+++a+S+kL+vlE++l++++est++ip+ l+++++l+++r ++l+ktg
  KKY15514.1   2 ETEDLEYVEDPARKDSDIQGDTIILGTKaegenmelletpvnSVLTKVALSSGFARSTKLAVLETMLSDYIESTRNIPTLLSRGSRLPFNRAFILRKTG 100
                 69***********************9999********************************************************************** PP

      DUF155 128 ellslrinlnlkselldt.PdffW...eepeleslyeavseyleikeRikiLn 176
                 +llslr++lnl+sel+d+ Pd++W   +e +le++y++v ++l+++ Rik+Ln
  KKY15514.1 101 QLLSLRAQLNLYSELTDSlPDMLWdsrQELKLEGYYDRVGRALDVGIRIKVLN 153
                 ************************7777799*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 1328.13
//
Query:       KKY15515.1  [L=1279]
Description: putative vacuolar assembly [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-16   60.5   2.8    1.9e-16   60.3   0.4    2.3  3  Clathrin    Region in Clathrin and VPS
  ------ inclusion threshold ------
       0.12   12.5   0.1        1.7    8.8   0.1    3.0  3  TPR_7       Tetratricopeptide repeat
       0.16   11.8   1.2        0.4   10.5   1.2    1.7  1  zf-RING_11  RING-like zinc finger
       0.24   11.7   0.6        2.4    8.5   0.1    2.6  2  Vps39_1     Vacuolar sorting protein 39 domain 1


Domain annotation for each model (and alignments):
>> Clathrin  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.1   9.3e+03      79     102 ..     599     622 ..     598     624 .. 0.75
   2 ?   -1.5   0.0      0.47   2.1e+03      86     107 ..     816     837 ..     799     870 .. 0.62
   3 !   60.3   0.4   4.2e-20   1.9e-16      51     142 ..     960    1051 ..     942    1052 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.1
                 HHHT-SSHHHHHHHHHTTXTHSSH CS
    Clathrin  79 lcekadlyeeavilykkinefkka 102
                 ++ k+++y+ea +l++ + e + a
  KKY15515.1 599 WLTKTEKYQEAWELLDQHPEAAGA 622
                 577888999999998887776655 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.47
                 HHHHHHHHHTTXTHSSHSSXSS CS
    Clathrin  86 yeeavilykkinefkkaisllk 107
                 +e a+ +y  +++ + a+s++k
  KKY15515.1 816 HEDALRCYIQLQNADAALSMIK 837
                 3344444444444444444333 PP

  == domain 3  score: 60.3 bits;  conditional E-value: 4.2e-20
                  HHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHTTXTHSSHSSX.SSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSXSHH CS
    Clathrin   51 lyakyddpqeleeflkknnnydlekvaklcekadlyeeavilykkinefkkaisl.lkklkdfddaieyaakvsnpelwekllealldkkpfe 142 
                  + a+ d+ + l+e+l++++ y  +++ k+ce ++++ e+v+l++k ++ kka+ l +++lkd  +ai +a+++++p+lwe+lle++++k++f+
  KKY15515.1  960 IFADFDR-DLLMEYLQSSTAYTFDSAVKICEHKHYTSELVYLLSKTGQMKKALFLiINDLKDVSQAISFAKEQDDPDLWEDLLEYSMSKPKFI 1051
                  5566786.99********************************************99*********************************9987 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.67     3e+03       6      21 ..     717     732 ..     717     733 .. 0.87
   2 ?    8.8   0.1   0.00039       1.7       5      24 ..     806     825 ..     806     849 .. 0.88
   3 ?   -2.6   0.0       1.7   7.5e+03       2      19 ..     909     926 ..     908     927 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.67
       TPR_7   6 arlysrlGdyeeAiel 21 
                 a ++ r+++++e++ +
  KKY15515.1 717 AWIFIRQNKFDELAPF 732
                 68999*******9875 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00039
       TPR_7   5 LarlysrlGdyeeAielyeq 24 
                 Larl+ ++G++e+A+++y q
  KKY15515.1 806 LARLFIADGRHEDALRCYIQ 825
                 8*****************99 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.7
       TPR_7   2 LlnLarlysrlGdyeeAi 19 
                 +++L  l++ + d+ +A+
  KKY15515.1 909 YFYLRALWRGESDRTDAA 926
                 566666666666666665 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.2   8.9e-05       0.4       2      26 ..    1176    1202 ..    1175    1203 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.9e-05
  zf-RING_11    2 CsICLeefk..pgqalfilpCsHtFHf 26  
                  C+ C + f+  ++++l+i  C Ht+H+
  KKY15515.1 1176 CAGCGQAFTsnESDRLIIFACTHTWHL 1202
                  6668888885457799**********6 PP

>> Vps39_1  Vacuolar sorting protein 39 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       0.2   9.1e+02      45      68 ..     806     829 ..     789     856 .. 0.79
   2 ?    8.5   0.1   0.00053       2.4       3      68 ..     956    1020 ..     954    1048 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.2
     Vps39_1  45 LidlYygkklheeALeLlkelade 68 
                 L  l+   + he+AL   ++l ++
  KKY15515.1 806 LARLFIADGRHEDALRCYIQLQNA 829
                 778899999999999999999883 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00053
     Vps39_1    3 TaLlkvYlktkpklvgpLlrleNaCdlkdveeiLkkekkykeLidlYygkklheeALeLlkelade 68  
                  Ta  ++++  +++l+++ l+ + a +++   +i ++++ ++eL+ l  + ++ ++AL L+++  ++
  KKY15515.1  956 TA-VQIFADFDRDLLMEYLQSSTAYTFDSAVKICEHKHYTSELVYLLSKTGQMKKALFLIINDLKD 1020
                  44.589999999*********************************************998765553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1103  (0.0615204); expected 358.6 (0.02)
Passed bias filter:                      749  (0.0417759); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.09u 0.33s 00:00:01.42 Elapsed: 00:00:00.54
# Mc/sec: 7176.92
//
Query:       KKY15516.1  [L=193]
Description: hypothetical protein UCRPC4_g06319 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1421  (0.0792571); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 1210.55
//
Query:       KKY15517.1  [L=252]
Description: hypothetical protein UCRPC4_g06320 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 1546.48
//
Query:       KKY15518.1  [L=84]
Description: hypothetical protein UCRPC4_g06321 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.45
# Mc/sec: 564.58
//
Query:       KKY15519.1  [L=1221]
Description: putative spindle-pole body protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-22   79.6   8.6    1.4e-22   79.6   8.6   15.6 17  Cnn_1N          Centrosomin N-terminal motif 1
    1.2e-19   70.6   0.4    1.2e-19   70.6   0.4    5.0  5  PACT_coil_coil  Pericentrin-AKAP-450 domain of centrosomal ta
    0.00015   21.8  20.6    0.00015   21.8  20.6   11.2 11  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
    0.00027   20.0  18.0    0.00027   20.0  18.0    8.9  9  Spc7            Spc7 kinetochore protein
     0.0011   19.4 193.3       0.62   10.5  18.0    8.7  8  Fez1            Fez1
      0.008   16.2  16.7      0.008   16.2  16.7   16.1 18  TMF_DNA_bd      TATA element modulatory factor 1 DNA binding
  ------ inclusion threshold ------
      0.015   15.4   3.1      0.015   15.4   3.1   17.4 19  HR1             Hr1 repeat


Domain annotation for each model (and alignments):
>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   8.6   5.6e-26   1.4e-22       1      72 [.     183     254 ..     183     255 .. 0.98
   2 ?    2.1   4.5     0.083   2.1e+02      24      68 ..     263     305 ..     259     309 .. 0.58
   3 ?    2.8   4.0     0.053   1.3e+02      28      70 ..     297     339 ..     293     342 .. 0.91
   4 ?    0.1  10.3      0.36   9.2e+02       9      66 ..     314     384 ..     305     391 .. 0.55
   5 ?    0.7  12.0      0.24   6.1e+02      12      64 ..     359     417 ..     353     428 .. 0.82
   6 ?   -2.4  11.0       2.1   5.4e+03      26      52 ..     433     465 ..     417     484 .. 0.47
   7 ?   -0.7   2.5      0.63   1.6e+03      32      71 ..     470     509 ..     458     514 .. 0.66
   8 ?    2.7   5.3     0.055   1.4e+02      26      72 ..     500     552 ..     498     559 .. 0.73
   9 ?    0.7   1.3      0.23   5.9e+02      35      52 ..     572     596 ..     546     617 .. 0.44
  10 ?   -5.7  14.2         7   1.8e+04      22      73 .]     666     716 ..     629     716 .. 0.86
  11 ?    2.3   7.1     0.073   1.9e+02      24      71 ..     717     771 ..     715     786 .. 0.56
  12 ?    2.6   4.2     0.058   1.5e+02      38      71 ..     790     823 ..     776     832 .. 0.74
  13 ?   -1.5   4.4       1.1   2.9e+03      36      71 ..     866     901 ..     826     903 .. 0.72
  14 !    6.1   2.7    0.0048        12      29      71 ..     917     958 ..     910     964 .. 0.68
  15 ?   -0.2   0.7      0.46   1.2e+03      44      60 ..     989    1005 ..     960    1022 .. 0.60
  16 !    5.5   2.9    0.0074        19      10      66 ..    1024    1091 ..    1021    1097 .. 0.65
  17 ?   -3.1   0.3       3.6   9.2e+03      43      70 ..    1193    1220 ..    1182    1221 .] 0.60

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 5.6e-26
      Cnn_1N   1 TlrEqeeqidkLkKENFdLKLriyfLeerleklseeqkeellkenielkveveslqkelkekkkllreaeka 72 
                 TlrEqe  idk++KENF+LK++i+fLe+++ +++ e ++++l+en++lkv+  +lqkel++ kk + +ae++
  KKY15519.1 183 TLREQEHIIDKIEKENFGLKMKIHFLEQAMAQSGREFNQAALRENTDLKVNKITLQKELHKFKKNIAQAERE 254
                 9*********************************************************************96 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.083
      Cnn_1N  24 yfLeerleklseeqkeellkenielkveveslqkelkekkkllre 68 
                  + +er+++++    e++  e   l++e++s + e+++++k++++
  KKY15519.1 263 EEYRERVKRKQA--DESIRIEMDRLQTELASKEEEIERLQKQVES 305
                 334444444433..5555556667777777777777777777765 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.053
      Cnn_1N  28 erleklseeqkeellkenielkveveslqkelkekkkllreae 70 
                 erl+k  e++k++  +++ el+ e+ +l+ ++ ek++++++  
  KKY15519.1 297 ERLQKQVESTKDDESAKLEELRGEIGDLEADIREKDRQIDQKD 339
                 799999999999999***********************99865 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.36
      Cnn_1N   9 idkLkKENFdLKLriyfLeerleklse.............eqkeellkenielkveveslqkelkekkkll 66 
                 +++L+ E  dL   i + + +++++++             +   el++e+   k ++e+lq el++ +++ 
  KKY15519.1 314 LEELRGEIGDLEADIREKDRQIDQKDDeldalkenaskdsDACAELEDELESAKNKIEELQEELERATEEA 384
                 56666666666666655555555555555555523333333445555555555555555555555555555 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.24
      Cnn_1N  12 LkKENFdLKLriyfLeerleklse......eqkeellkenielkveveslqkelkekkk 64 
                 L+ E  + K +i +L+e+le+ +e      +++e++l+e    ++++e+l++e+ +k  
  KKY15519.1 359 LEDELESAKNKIEELQEELERATEearsarKEREDALEEKRMAEDNLEELRDEMMNKSF 417
                 5666666799**************99999999999999999999999999999888765 PP

  == domain 6  score: -2.4 bits;  conditional E-value: 2.1
      Cnn_1N  26 Leerleklse......eqkeellkenielkvev 52 
                 Lee+le+l++      e++++ l++  el+++v
  KKY15519.1 433 LEEQLEELQDdharlqEEMQQKLDQEKELQEHV 465
                 333333333333333333333333333333333 PP

  == domain 7  score: -0.7 bits;  conditional E-value: 0.63
      Cnn_1N  32 klseeqkeellkenielkveveslqkelkekkkllreaek 71 
                 k + ++++ l +e+     e+ + +++ ++++++l++a++
  KKY15519.1 470 KEAASERRRLQSELETAFRERDNAKRDFDKMTDRLQQASN 509
                 4444556666666666666777777777777777777765 PP

  == domain 8  score: 2.7 bits;  conditional E-value: 0.055
      Cnn_1N  26 Leerleklse......eqkeellkenielkveveslqkelkekkkllreaeka 72 
                 + +rl++ s+      e+k+ l      l +e  +lq+el + +  + e+e+a
  KKY15519.1 500 MTDRLQQASNdlraktEEKDLLQTRHDALTEESSQLQRELSKSRSTISELERA 552
                 56788888888888854444444445557888888888888888888888886 PP

  == domain 9  score: 0.7 bits;  conditional E-value: 0.23
      Cnn_1N  35 e.......eqkeellkenielkvev 52 
                 +       eq+++l++e      + 
  KKY15519.1 572 KnevdlltEQIDNLHREVNSKDSQY 596
                 0223333345555555544444455 PP

  == domain 10  score: -5.7 bits;  conditional E-value: 7
      Cnn_1N  22 riyfLeerleklseeqkeellkenielkveveslqkelkekkkllreaekai 73 
                 +i++L+e + +++e  +e + +e+ + k+e+    +e  ++k++++++e++i
  KKY15519.1 666 QIQELNEDFSAKRE-ASETARNELANAKEELRISIREQAALKEKVDQLEEEI 716
                 56777777777766.99999*****************9*******9999875 PP

  == domain 11  score: 2.3 bits;  conditional E-value: 0.073
      Cnn_1N  24 yfLeerleklse.......eqkeellkenielkveveslqkelkekkkllreaek 71 
                   L+ +le+ +e       +++e+++ ++ +l++e +slq++l +   +l+e ++
  KKY15519.1 717 EVLQANLEEEAEyaevqklKSVEDAEGQLQKLRQEKQSLQDQLANVSIELHETKR 771
                 5666666666666666666555555555555555555555555544444444333 PP

  == domain 12  score: 2.6 bits;  conditional E-value: 0.058
      Cnn_1N  38 keellkenielkveveslqkelkekkkllreaek 71 
                  e+  + + +  +e  +lq+e+++++k+l++a +
  KKY15519.1 790 PEDSPRRRFNFDQEKRELQREKQRLEKELDRARQ 823
                 4555566677788888888888888888888765 PP

  == domain 13  score: -1.5 bits;  conditional E-value: 1.1
      Cnn_1N  36 eqkeellkenielkveveslqkelkekkkllreaek 71 
                  + e+  +e+i  k +v+ l+  +ke++ ll++   
  KKY15519.1 866 ASGENRDRELISAKNKVQRLELRVKELEGLLNNQTA 901
                 444555678888999999999999999999887665 PP

  == domain 14  score: 6.1 bits;  conditional E-value: 0.0048
      Cnn_1N  29 rleklseeqkeellkenielkveveslqkelkekkkllreaek 71 
                  l + ++   +++l+  +elk  +++l+ ++ e++++l+e+++
  KKY15519.1 917 DLSEARK-RETAVLQREVELKASNKQLKASVFELERELHEMQR 958
                 5555555.55667777777777777777777777777777776 PP

  == domain 15  score: -0.2 bits;  conditional E-value: 0.46
      Cnn_1N   44 enielkveveslqkelk 60  
                   + el+ ++ +l+++++
  KKY15519.1  989 ALKELQSKNRDLERQVQ 1005
                  22333344444444333 PP

  == domain 16  score: 5.5 bits;  conditional E-value: 0.0074
      Cnn_1N   10 dkLkKENFdLKL.....riyfLeerleklse......eqkeellkenielkveveslqkelkekkkll 66  
                  ++L+ E  +LKL     ri +L++++++l++      ++ e++  e+ +l+ + e+ +  l + k++l
  KKY15519.1 1024 STLEAEALSLKLsdrddRISELKQQVQRLRQersssiDKAEAISTELGDLQRKYEKVKSRLSTSKNRL 1091
                  5677777777776666689***********95555555555555555555555555555555555555 PP

  == domain 17  score: -3.1 bits;  conditional E-value: 3.6
      Cnn_1N   43 kenielkveveslqkelkekkkllreae 70  
                  k+  ++ + +++ +  +++++ +lr++e
  KKY15519.1 1193 KQMRKIGDGLKKAKTAMERRRSSLRQLE 1220
                  4444455555666666777777777766 PP

>> PACT_coil_coil  Pericentrin-AKAP-450 domain of centrosomal targeting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       6.4   1.6e+04      19      39 ..     299     319 ..     294     341 .. 0.69
   2 ?   -3.1   0.6       4.7   1.2e+04      22      51 ..     425     454 ..     415     487 .. 0.55
   3 ?   -4.1   4.6         7   1.8e+04       7      63 ..     683     735 ..     676     800 .. 0.57
   4 ?   -3.0   0.2       4.4   1.1e+04      27      67 ..     936     977 ..     928     980 .. 0.55
   5 !   70.6   0.4   4.7e-23   1.2e-19       1      83 []    1114    1192 ..    1114    1192 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6.4
  PACT_coil_coil  19 Lllqlevfqacnkadlrllar 39 
                     L+ q+e  ++ + a+l+ l++
      KKY15519.1 299 LQKQVESTKDDESAKLEELRG 319
                     667777777777777777765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.7
  PACT_coil_coil  22 qlevfqacnkadlrllarigvelkkkkksk 51 
                     qle+ +   +++l+ l++ ++ l++++++k
      KKY15519.1 425 QLEEKTGKLEEQLEELQDDHARLQEEMQQK 454
                     555555555666666666666663211111 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 7
  PACT_coil_coil   7 slRkdlayqKrYLllqlevfqacnkadlrllarigvelkkkkkskeeekrrkprrkl 63 
                     + R++la +K+ L   +++  a +++  +l ++i+v +     + eee +    +kl
      KKY15519.1 683 TARNELANAKEELRISIREQAALKEKVDQLEEEIEVLQ----ANLEEEAEYAEVQKL 735
                     56777777777776666666665555444444444444....222222222222222 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 4.4
  PACT_coil_coil  27 qacnkadlrllarigvelkk.kkkskeeekrrkprrklrsaa 67 
                     +a+nk+  +++ +++ el++ ++ + +++++++  ++lr  a
      KKY15519.1 936 KASNKQLKASVFELERELHEmQRARYNAKSPSSSPPSLRELA 977
                     566666666666766666433222333444445555566555 PP

  == domain 5  score: 70.6 bits;  conditional E-value: 4.7e-23
  PACT_coil_coil    1 rleReeslRkdlayqKrYLllqlevfqacnkadlrllarigvelkkkkkskeeekrrkprrklrsaatavraiaRmrvlarkW 83  
                      +++Re ++Rkdla++K++L++   v++acn+adl++++++gv      ++++  ++ +p++klr+ +++++a+++mr++   W
      KKY15519.1 1114 KWQREVQFRKDLAWSKNFLEMGEVVRSACNDADLKMMNEMGVRA----RKSSYGSKLSPKQKLRAGVHVILATVKMRKMEDDW 1192
                      8*******************************************....67789999************************999 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   8.0     0.071   1.8e+02      15      97 ..     194     270 ..     183     275 .. 0.70
   2 ?   -3.2  25.4       2.9   7.6e+03      21     126 ..     236     344 ..     218     358 .. 0.72
   3 ?   -1.2  38.0      0.72   1.8e+03       9     129 ..     342     466 ..     336     474 .. 0.81
   4 ?    3.2  29.8     0.032        82       6     137 ..     445     573 ..     441     587 .. 0.59
   5 ?   -2.9  20.8       2.4   6.3e+03      16     101 ..     572     672 ..     554     683 .. 0.67
   6 !   21.8  20.6   5.7e-08   0.00015       6      91 ..     689     775 ..     684     793 .. 0.89
   7 ?    1.7  17.6     0.091   2.3e+02      37     135 ..     768     864 ..     765     869 .. 0.80
   8 ?    0.1  19.8       0.3   7.6e+02      27     112 ..     805     898 ..     792     905 .. 0.67
   9 ?   -4.9  17.7         7   1.8e+04      26     126 ..     911    1023 ..     907    1037 .. 0.78
  10 ?   -2.4  18.5       1.8   4.5e+03       7     120 ..     985    1101 ..     979    1108 .. 0.75
  11 ?   -2.3   0.4       1.7   4.3e+03       4      32 ..    1184    1212 ..    1182    1219 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.071
  CENP-F_leu_zip  15 serkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervs 97 
                     +e+++  Lk k+  Le+ + +s+++ +++ l       e   lk ++ +l++el++++ ++++  +e e    +l++ +erv+
      KKY15519.1 194 IEKENFGLKMKIHFLEQAMAQSGREFNQAALR------ENTDLKVNKITLQKELHKFKKNIAQAEREAELYRLQLEEYRERVK 270
                     45566667777777777777777776666654......445677778888888888888888888888888888888888876 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.9
  CENP-F_leu_zip  21 sLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkq....ervseLeslnsslenlle 111
                      L+    + ++++ ++e++ e   l+ E+ ++ v+  k+  e ++ e+ +l+++L++  +e e L+k+++  +     + +eL     +le  ++
      KKY15519.1 236 TLQKELHKFKKNIAQAEREAELYRLQLEEYRERVKR-KQADESIRIEMDRLQTELASKEEEIERLQKQVESTKddesAKLEELRGEIGDLEADIR 329
                     455555555556666666666666666666665554.666789999*********************9987552211588888888899999999 PP

  CENP-F_leu_zip 112 ekEqekvqmkeeska 126
                     ek  +  q  +e +a
      KKY15519.1 330 EKDRQIDQKDDELDA 344
                     999998888777655 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.72
  CENP-F_leu_zip   9 lekLKeserka....dsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervse. 98 
                     l+ LKe+ +k     + L+d  e+ +  +e+++e++e+++ ea ++++e e   ee+++ + +l+el+ ++ + +   + L ++l++k  + +e 
      KKY15519.1 342 LDALKENASKDsdacAELEDELESAKNKIEELQEELERATEEARSARKEREDALEEKRMAEDNLEELRDEMMNKSFTTKGLSRQLEEKTGKLEEq 436
                     66778777665222257***************************************************************************876 PP

  CENP-F_leu_zip  99 LeslnsslenlleekEqekvqmkeeskaave 129
                     Le+l+ +  +l ee  q k   ++e ++ v 
      KKY15519.1 437 LEELQDDHARLQEEMQQ-KLDQEKELQEHVR 466
                     99999888776555555.5555555555554 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.032
  CENP-F_leu_zip   6 lhvlekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLe 100
                      +++e++++   ++  L+++v   e+e      ++ ++  e Et+  e  + k   ++++ +l++ + dL a ++ek+ L+       e+ s+L+
      KKY15519.1 445 ARLQEEMQQKLDQEKELQEHVRIVEKEAAS---ERRRLQSELETAFRERDNAKRDFDKMTDRLQQASNDLRAKTEEKDLLQTRHDALTEESSQLQ 536
                     5678889999999999*********98654...33345556666666666666666666666666666666666555555555555555555555 PP

  CENP-F_leu_zip 101 slnsslenlleekEqekvqmkeeskaaveeLqtqlke 137
                     +  s+ +++++e+E    +++ ++ ++ + L+tq k+
      KKY15519.1 537 RELSKSRSTISELERALDEERHHAAQNDSILRTQHKN 573
                     5555555555555555444444444444444444433 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 2.4
  CENP-F_leu_zip  16 erkadsLkdkvenLerelems.......eenqekvileaEtskaevet.......lkeeieelaeelreleldLv.alrsekeeLekelqkkqer 95 
                     + + d+L ++++nL re++         +e+ +++ ++ Et+ + +e+         ++++el+ +l+  e++L+ al sek+   +e +  +++
      KKY15519.1 572 KNEVDLLTEQIDNLHREVNSKdsqyasdQESWDALRRNLETAAKRAEEkasglqrTVDKLQELEGNLSGKESKLQqALESEKQRHRQEEEVLNRQ 666
                     45568899999999998764311111114445556667777666666655554446677888888899889998635789999999999999999 PP

  CENP-F_leu_zip  96 vseLes 101
                     ++eL++
      KKY15519.1 667 IQELNE 672
                     999975 PP

  == domain 6  score: 21.8 bits;  conditional E-value: 5.7e-08
  CENP-F_leu_zip   6 lhvlekLKeserkadsLkdkvenLerelemseenqekvileaEtsk.aevetlkeeieelaeelreleldLvalrsekeeLekelqk 91 
                      +++e+L+ s r+++ Lk+kv++Le e+e +++n+e+    aE +k + ve  + ++++l++e + l+ +L++++ e  e ++el +
      KKY15519.1 689 ANAKEELRISIREQAALKEKVDQLEEEIEVLQANLEEEAEYAEVQKlKSVEDAEGQLQKLRQEKQSLQDQLANVSIELHETKRELGD 775
                     5789*********************************9999999986789************************9998888888765 PP

  == domain 7  score: 1.7 bits;  conditional E-value: 0.091
  CENP-F_leu_zip  37 eenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqekvqmkeeskaaveeL 131
                     e ++e   le + +++e++t + e     +++ ++ ++  +l++ek+ Lekel   +++ + L ++n sle+ ++ + +    ++++ ++++++L
      KKY15519.1 768 ETKRELGDLESDAARMEAQTRRPEDSP--RRRFNFDQEKRELQREKQRLEKELDRARQETKALAESNASLEQEINAEIERATSEENRLNSEIDQL 860
                     555666666666666666665555444..666678888999*********************************98777788899999******* PP

  CENP-F_leu_zip 132 qtql 135
                     + q+
      KKY15519.1 861 RHQK 864
                     9986 PP

  == domain 8  score: 0.1 bits;  conditional E-value: 0.3
  CENP-F_leu_zip  27 enLerelemseenqekvile....aEtskaevetlkeeieelaeelreleldLvalrsek....eeLekelqkkqervseLeslnsslenllee 112
                      +L+re++ +e++++++  e    aE++    +++++eie+ ++e ++l++++++lr +k    e+ ++el   +++v+ Le +  +le ll++
      KKY15519.1 805 RELQREKQRLEKELDRARQEtkalAESNASLEQEINAEIERATSEENRLNSEIDQLRHQKlasgENRDRELISAKNKVQRLELRVKELEGLLNN 898
                     4677777777777776665511112333233334777788888888888888888887766666788888888888888888888888888776 PP

  == domain 9  score: -4.9 bits;  conditional E-value: 7
  CENP-F_leu_zip   26 venLerelemseenqekvileaEts.kaevetlkeeieelaeelreleldLvalr.........sekeeLekelqkkqervseLeslnsslen 108 
                      v  L r+l ++ + +e ++l+ E + ka  ++lk+ + el++el+e++    + +         +e     ++l +     +eL+s n +le+
      KKY15519.1  911 VSILRRDLSEARK-RETAVLQREVElKASNKQLKASVFELERELHEMQRARYNAKspsssppslRELARARQDLLDAEAALKELQSKNRDLER 1002
                      6778899988765.5999999998736666779999999999999999998888889998988888888899999999999999999999999 PP

  CENP-F_leu_zip  109 lleek...Eqekvqmkeeska 126 
                      +++++   E+e++ +++  k+
      KKY15519.1 1003 QVQRAavdEEERKDLHDLVKT 1023
                      999863335555555555555 PP

  == domain 10  score: -2.4 bits;  conditional E-value: 1.8
  CENP-F_leu_zip    7 hvlekLKeserkadsLkdkvenL...erelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqerv 96  
                       ++  LKe ++k+  L+ +v++    e e +++       +leaE    +++   + i el+++ ++l+++ ++     e +  el + q++ 
      KKY15519.1  985 DAEAALKELQSKNRDLERQVQRAavdEEERKDLHDLVKTSTLEAEALSLKLSDRDDRISELKQQVQRLRQERSSSIDKAEAISTELGDLQRKY 1077
                      567789999999999998888762234445555555556677888888888888888888888888888888888888899999999999999 PP

  CENP-F_leu_zip   97 seLeslnsslenlleekEqekvqm 120 
                      +  +s+ s+ +n l +    +++m
      KKY15519.1 1078 EKVKSRLSTSKNRLDDDTTHEKEM 1101
                      999999999999998765555555 PP

  == domain 11  score: -2.3 bits;  conditional E-value: 1.7
  CENP-F_leu_zip    4 kklhvlekLKeserkadsLkdkvenLere 32  
                      k +++++ +K++++  d Lk    ++er 
      KKY15519.1 1184 KMRKMEDDWKQMRKIGDGLKKAKTAMERR 1212
                      56778888888888888888887888775 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8  13.0      0.89   2.3e+03     176     252 ..     209     291 ..     178     293 .. 0.56
   2 !   20.0  18.0     1e-07   0.00027     165     258 ..     278     371 ..     272     372 .. 0.92
   3 !    3.7  14.1    0.0095        24     209     276 ..     357     424 ..     349     431 .. 0.51
   4 !    9.3  33.3   0.00018      0.47     141     276 ..     430     572 ..     422     588 .. 0.88
   5 !    9.7  30.6   0.00014      0.35     125     273 ..     591     737 ..     577     741 .. 0.91
   6 !    7.6  28.4   0.00062       1.6     142     280 ..     739     887 ..     732     892 .. 0.89
   7 !    7.4  19.8    0.0007       1.8     144     289 ..     914    1063 ..     911    1067 .. 0.86
   8 !    4.9   6.2    0.0041        10     174     253 ..    1040    1122 ..    1031    1147 .. 0.73
   9 ?   -1.5   0.1      0.35     9e+02     147     181 ..    1184    1218 ..    1157    1220 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.89
        Spc7 176 kaeleeeleklqe......aaeelesid.keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiae 252
                 ++++ +  ++ ++         ++++i+ ++eL+++++++a+++ e e  + +l+e +e++++++++ e+++ ++++l++e+a+
  KKY15519.1 209 EQAMAQSGREFNQaalrenTDLKVNKITlQKELHKFKKNIAQAEREAELYRLQLEEYRERVKRKQAD-ESIRIEMDRLQTELAS 291
                 3333333333322221111222345566688999999999999999999999999999988888876.4666666666666665 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 1e-07
        Spc7 165 ldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervle 258
                 +   +++l++e a+ eee+e+lq+++e+ ++ ++++Leelr e+ +l+a+i+ek ++++++ ++l++l+e+ ++ ++ ++ele+e+++a++ +e
  KKY15519.1 278 IRIEMDRLQTELASKEEEIERLQKQVESTKDDESAKLEELRGEIGDLEADIREKDRQIDQKDDELDALKENASKDSDACAELEDELESAKNKIE 371
                 55567899********************99999*******************************************************998776 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.0095
        Spc7 209 aelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevsrlkeevk 276
                 ael+ e+e+ k++++elqe+le+ +e+  +++++++++ ee + ae+ lee ++   +   + k   +
  KKY15519.1 357 AELEDELESAKNKIEELQEELERATEEARSARKEREDALEEKRMAEDNLEELRDEMMNKSFTTKGLSR 424
                 44555555555555555555555555555555555555555555555555555544444444444444 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.00018
        Spc7 141 kegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqe.aaeeles......idkeeLeelreelaelkaeieekkkelaelqeqleel 232
                   +lee+le+l++d ++L++++++  +  +el+e+   +e+e++++++  + ele+        k +  ++ ++l+++++++++k +e + lq++ ++l
  KKY15519.1 430 TGKLEEQLEELQDDHARLQEEMQQKLDQEKELQEHVRIVEKEAASERRrLQSELETafrerdNAKRDFDKMTDRLQQASNDLRAKTEEKDLLQTRHDAL 528
                 5789***************************************99999645556656666545599********************************* PP

        Spc7 233 eekieelkeqkseleeeiaeaervleeckgwsesevsrlkeevk 276
                 +e+ ++l+ + s+ ++ i+e er l+e++++ +++ s l++++k
  KKY15519.1 529 TEESSQLQRELSKSRSTISELERALDEERHHAAQNDSILRTQHK 572
                 ******************************99988777666655 PP

  == domain 5  score: 9.7 bits;  conditional E-value: 0.00014
        Spc7 125 akkdWYeWRmqllegLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkela 223
                 +k + Y+   +  + L+ +le   +  ee ++ L++  ++l+el  +l+ ++++l++ le++++++++ e++ + +++el e++++  +  e  ++ela
  KKY15519.1 591 SKDSQYASDQESWDALRRNLETAAKRAEEKASGLQRTVDKLQELEGNLSGKESKLQQALESEKQRHRQEEEVLNRQIQELNEDFSAKREASETARNELA 689
                 6666666666777899*********************************************************************************** PP

        Spc7 224 elqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevsrlke 273
                 + +e+l  +  + ++lke+ ++leeei+  +  lee+   +  ev++lk+
  KKY15519.1 690 NAKEELRISIREQAALKEKVDQLEEEIEVLQANLEEE--AEYAEVQKLKS 737
                 ****************************999999965..55678888875 PP

  == domain 6  score: 7.6 bits;  conditional E-value: 0.00062
        Spc7 142 egleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles.........idkeeLeelreelaelkaeieekkkelaelqeqle. 230
                 e +e +l++l+++k+ L++q ++++  l+e+++e  +le+ +++++++ +  e+          +k eL+  +++l++     ++  k lae ++ le 
  KKY15519.1 739 EDAEGQLQKLRQEKQSLQDQLANVSIELHETKRELGDLESDAARMEAQTRRPEDsprrrfnfdQEKRELQREKQRLEKELDRARQETKALAESNASLEq 837
                 46788999**************************************97777777777888855558899999999999999999999999999888853 PP

        Spc7 231 eleekieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkalee 280
                 e++++ie ++++ ++l++ei + ++ + +  + ++ e+ + k++v++le 
  KKY15519.1 838 EINAEIERATSEENRLNSEIDQLRHQKLASGENRDRELISAKNKVQRLEL 887
                 799*********************************************96 PP

  == domain 7  score: 7.4 bits;  conditional E-value: 0.0007
        Spc7  144 leenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles.....idkeeLeelreelaelkaeieekkkelaelqeqleeleek 235 
                  l++ l++ ++ ++ + ++e el++  ++l++   ele+el+++q+a+ + +s         eL+ +r++l +++a ++e++ +  +l++q+++ + +
  KKY15519.1  914 LRRDLSEARKRETAVLQREVELKASNKQLKASVFELERELHEMQRARYNAKSpssspPSLRELARARQDLLDAEAALKELQSKNRDLERQVQRAAVD 1010
                  567788888888889999999***********************965555555554334789*********************************** PP

        Spc7  236 ieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkaleeltgwkivsl 289 
                   ee k+  + +++ + eae +  +    +++ +s+lk++v++l ++   +i ++
  KKY15519.1 1011 EEERKDLHDLVKTSTLEAEALSLKLS-DRDDRISELKQQVQRLRQERSSSIDKA 1063
                  ****************9999887555.56789***********99987777665 PP

  == domain 8  score: 4.9 bits;  conditional E-value: 0.0041
        Spc7  174 eekaeleeeleklqe.aaeelesid..keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaea 253 
                   + +el++++++l++ ++ ++++ +  ++eL  l+++ +++k+ ++  k++l++ ++  +e +  i+e++  +++++ e++  
  KKY15519.1 1040 DRISELKQQVQRLRQeRSSSIDKAEaiSTELGDLQRKYEKVKSRLSTSKNRLDDDTTHEKEMRGLIKEIHWLRAKWQREVQFR 1122
                  45567777777777733333444333467888888888888888888888888888888888888888888888888888755 PP

  == domain 9  score: -1.5 bits;  conditional E-value: 0.35
        Spc7  147 nlegleedkelLekqeeeldellpeleeekaelee 181 
                  ++ ++e+d +++ k  + l++++ ++e+++++l++
  KKY15519.1 1184 KMRKMEDDWKQMRKIGDGLKKAKTAMERRRSSLRQ 1218
                  56788999999999999999999999988888876 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  17.4     0.013        34      39     158 ..     183     303 ..     181     310 .. 0.86
   2 !   10.0  39.3   0.00035      0.89       8     159 ..     292     462 ..     291     472 .. 0.75
   3 !   10.0  21.4   0.00034      0.88      39     166 ..     475     604 ..     471     616 .. 0.74
   4 !    9.1  22.7   0.00064       1.6      41     154 ..     618     733 ..     606     735 .. 0.80
   5 !   10.5  18.0   0.00024      0.62      63     157 ..     733     831 ..     729     845 .. 0.80
   6 ?    0.6  15.4      0.25   6.5e+02      60     147 ..     803     892 ..     799     907 .. 0.61
   7 !    6.7  28.8    0.0035       8.9       9     154 ..     908    1094 ..     905    1134 .. 0.63
   8 ?   -2.9   0.1       3.2   8.1e+03      88     134 ..    1184    1206 ..    1140    1219 .. 0.51

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.013
        Fez1  39 qlrelrakleekeeeikeleesleektlelevcenelqrk.kseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqeaeeleelkre 136
                 +lre ++ +++ e+e+  l+ +++  ++ + +   e++++   e++ l+ +  +l++el++++++++++++e+e  +l+ +e +++ +++++ e+ + e
  KKY15519.1 183 TLREQEHIIDKIEKENFGLKMKIHFLEQAMAQSGREFNQAaLRENTDLKVNKITLQKELHKFKKNIAQAEREAELYRLQLEEYRERVKRKQADESIRIE 281
                 5789999999999999999999999999999999999776456666677777889*************999999999999999999999999999**** PP

        Fez1 137 verlraeLkeerqkkeeqassF 158
                 ++rl++eL+ ++++ e+ +++ 
  KKY15519.1 282 MDRLQTELASKEEEIERLQKQV 303
                 *********9999999887765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00035
        Fez1   8 ksGEislLKqQLkdsqaevtqklse....ivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelree 102
                 k  Ei  L +Q   ++ + ++kl+e    i  l a++re   ++++k++e++ l+e++++ ++   ++e+el+ +k++ e l+e++e++ ee ++ r+e
  KKY15519.1 292 KEEEIERLQKQVESTKDDESAKLEElrgeIGDLEADIREKDRQIDQKDDELDALKENASKDSDACAELEDELESAKNKIEELQEELERATEEARSARKE 390
                 5669999******9999999999752222678****************************************************************999 PP

        Fez1 103 lselsleeeeaa..........lesdeakaqrqe............aeeleelkreverlra...eLkeerqkkeeqassFe 159
                  +++ +e++ a+          +          +            +e++++l++++e+l+    +L+ee q+k +q+++ +
  KKY15519.1 391 REDALEEKRMAEdnleelrdemM----------NksfttkglsrqlEEKTGKLEEQLEELQDdhaRLQEEMQQKLDQEKELQ 462
                 88877665555544444444330..........2444444444444677777777777776544467777777666666554 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00034
        Fez1  39 qlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe..aeeleelkr 135
                 + r l+++le+  +e ++++  +++ t+ l++  n+l+ k++e++ll+ + ++l ee ++l++els++ ++ +e + + de +++ ++  +   ++ k+
  KKY15519.1 475 ERRRLQSELETAFRERDNAKRDFDKMTDRLQQASNDLRAKTEEKDLLQTRHDALTEESSQLQRELSKSRSTISELERALDEERHHAAQndSILRTQHKN 573
                 67889999***99****************************************************9987776666644444444433323334445555 PP

        Fez1 136 everlraeLkeerqkkeeqassFeqERrtWq 166
                 ev+ l +++ + +++ +++ s+++++ + W 
  KKY15519.1 574 EVDLLTEQIDNLHREVNSKDSQYASDQESWD 604
                 5666666666666666666666666665554 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00064
        Fez1  41 relrakleekeeeikeleesleektlelev.cenelqrkkseaellrekvekleeelkelreelselsleeeeaalesd.eakaqrqeaeeleelkrev 137
                  e  + l+++ ++++ele +l+ k+ +l++ +e+e qr+++e+e+l+ ++++l+e+++  re+ +++ +e ++a++e + + ++q + +e++++l++e+
  KKY15519.1 618 EEKASGLQRTVDKLQELEGNLSGKESKLQQaLESEKQRHRQEEEVLNRQIQELNEDFSAKREASETARNELANAKEELRiSIREQAALKEKVDQLEEEI 716
                 4566779999999***********999976379*************************999977776655555544433144566666999******** PP

        Fez1 138 erlraeLkeerqkkeeq 154
                 e l+a+L+ee +  e q
  KKY15519.1 717 EVLQANLEEEAEYAEVQ 733
                 *********99887766 PP

  == domain 5  score: 10.5 bits;  conditional E-value: 0.00024
        Fez1  63 ektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe.........aeeleelkreverlraeLkeerqkke 152
                 +k +++e  e +lq+ ++e++ l++++ +++ el+e+++el +l++++++++++     ++r e          +e +el+re +rl++eL   rq+++
  KKY15519.1 733 QKLKSVEDAEGQLQKLRQEKQSLQDQLANVSIELHETKRELGDLESDAARMEAQ-----TRRPEdsprrrfnfDQEKRELQREKQRLEKELDRARQETK 826
                 68899*************************************977665554433.....3333334445566778899999999999999999999988 PP

        Fez1 153 eqass 157
                 + a+s
  KKY15519.1 827 ALAES 831
                 77654 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.25
        Fez1  60 sleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe.....aeeleelkreverlraeLkee 147
                 + +e ++e +++e+el+r+++e++ l e   +le+e++   e++++   ee++ ++e d+ ++q+ +      +el + k++v+rl+ ++ke 
  KKY15519.1 803 EKRELQREKQRLEKELDRARQETKALAESNASLEQEINAEIERATS---EENRLNSEIDQLRHQKLAsgenrDRELISAKNKVQRLELRVKEL 892
                 5566778888999999999999999999999999998765443333...23333444444444444444444445555666666666555543 PP

  == domain 7  score: 6.7 bits;  conditional E-value: 0.0035
        Fez1    9 sGEislLKqQLkdsqaevtqklseivalkaqlrelrakleekeeeikelee.sleektle.............................levcenel 75  
                  +GE+s+L+  L ++++  t+ l+  v+lka+ ++l+a++ e e+e++e++  +++ k+ +                             +  +e ++
  KKY15519.1  908 AGEVSILRRDLSEARKRETAVLQREVELKASNKQLKASVFELERELHEMQRaRYNAKSPSssppslrelararqdlldaeaalkelqskNRDLERQV 1004
                  7**********************************************99861566777668888888877777777665555544444322223333 PP

        Fez1   76 qrk.................kseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe........aeeleelkreverlraeLkee 147 
                  qr+                 + eae l+ k++  ++ ++el++++              ++ +++r++        ++el++l+r+ e+++++L++ 
  KKY15519.1 1005 QRAavdeeerkdlhdlvktsTLEAEALSLKLSDRDDRISELKQQV--------------QRLRQERSSsidkaeaiSTELGDLQRKYEKVKSRLSTS 1087
                  332444322222222222222222222223333333333333322..............22222222245555555677888888888888888888 PP

        Fez1  148 rqkkeeq 154 
                  +++ ++ 
  KKY15519.1 1088 KNRLDDD 1094
                  7776554 PP

  == domain 8  score: -2.9 bits;  conditional E-value: 3.2
        Fez1   88 kvekleeelkelreelselsleeeeaalesdeakaqrqeaeeleelk 134 
                  k++k+e+++k++r+                          + l++ k
  KKY15519.1 1184 KMRKMEDDWKQMRK------------------------IGDGLKKAK 1206
                  33333333333333........................222222222 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.54   1.4e+03      29      65 ..     185     221 ..     182     228 .. 0.82
   2 ?   -1.4   4.9      0.92   2.3e+03      38      74 .]     237     273 ..     223     273 .. 0.87
   3 !   13.2  16.5   2.7e-05     0.069       3      71 ..     285     350 ..     283     353 .. 0.93
   4 !   16.2  16.7   3.1e-06     0.008       2      69 ..     323     390 ..     322     394 .. 0.94
   5 ?   -4.9  13.0         7   1.8e+04      30      64 ..     425     452 ..     388     466 .. 0.57
   6 ?   -7.7  15.8         7   1.8e+04      33      64 ..     428     452 ..     420     508 .. 0.54
   7 ?   -1.7   1.2       1.2   3.1e+03      45      67 ..     500     522 ..     475     529 .. 0.56
   8 ?   -2.0   9.6       1.4   3.7e+03      16      47 ..     527     558 ..     509     593 .. 0.53
   9 ?    2.4   3.7     0.063   1.6e+02      12      74 .]     580     642 ..     579     642 .. 0.95
  10 ?   -2.0   9.7       1.4   3.6e+03      22      71 ..     647     696 ..     643     698 .. 0.94
  11 ?   -0.7  12.5      0.56   1.4e+03      13      72 ..     666     725 ..     664     728 .. 0.85
  12 !    8.5   6.6   0.00079         2      20      74 .]     731     784 ..     729     784 .. 0.90
  13 ?    0.1  15.1      0.32   8.1e+02      15      67 ..     805     861 ..     801     864 .. 0.78
  14 ?   -0.5   7.5      0.51   1.3e+03      20      70 ..     842     896 ..     840     900 .. 0.77
  15 ?   -0.8   3.7      0.61   1.6e+03      18      56 ..     865     903 ..     854     922 .. 0.52
  16 ?    1.6   0.7      0.11   2.7e+02      27      54 ..     931     958 ..     924     965 .. 0.79
  17 ?    4.8   2.5     0.011        27      25      55 ..     980    1010 ..     973    1024 .. 0.73
  18 ?    4.3   5.1     0.015        39      20      72 ..    1027    1079 ..    1025    1088 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.54
  TMF_DNA_bd  29 lklnntikkLrkknkelekeikelkkkleklekelee 65 
                 ++++ +i+k  k+n  l  +i  l++  +++ +e+++
  KKY15519.1 185 REQEHIIDKIEKENFGLKMKIHFLEQAMAQSGREFNQ 221
                 5688899999999999999999999999998888876 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.92
  TMF_DNA_bd  38 Lrkknkelekeikelkkkleklekeleeleerlkeae 74 
                 L+k++ +  k+i++ +++ e +  +lee +er k+++
  KKY15519.1 237 LQKELHKFKKNIAQAEREAELYRLQLEEYRERVKRKQ 273
                 8899999999999999999999999999999999885 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 2.7e-05
  TMF_DNA_bd   3 lekklkeKDeqIaqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlk 71 
                 l++ l++K+e+I+ L+   ++ +++ +++++++ +Lr ++ +le +i+e ++++++++ el+ l+e ++
  KKY15519.1 285 LQTELASKEEEIERLQ---KQVESTKDDESAKLEELRGEIGDLEADIREKDRQIDQKDDELDALKENAS 350
                 7899************...788889999999**********************************9887 PP

  == domain 4  score: 16.2 bits;  conditional E-value: 3.1e-06
  TMF_DNA_bd   2 slekklkeKDeqIaqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleer 69 
                 +le++++eKD qI+q+  E+ +L+ +  k + +  +L  +++ + ++i+el+++le+ ++e  + +++
  KKY15519.1 323 DLEADIREKDRQIDQKDDELDALKENASKDSDACAELEDELESAKNKIEELQEELERATEEARSARKE 390
                 799********************************************************998887765 PP

  == domain 5  score: -4.9 bits;  conditional E-value: 7
  TMF_DNA_bd  30 klnntikkLrkknkelekeikelkkkleklekele 64 
                 +l+++  kL ++++el  + ++l+       +e++
  KKY15519.1 425 QLEEKTGKLEEQLEELQDDHARLQ-------EEMQ 452
                 333333444444444444444443.......3322 PP

  == domain 6  score: -7.7 bits;  conditional E-value: 7
  TMF_DNA_bd  33 ntikkLrkknkelekeikelkkkleklekele 64 
                 ++  kL ++++el  + ++l+       +e++
  KKY15519.1 428 EKTGKLEEQLEELQDDHARLQ-------EEMQ 452
                 333333333333333333333.......2221 PP

  == domain 7  score: -1.7 bits;  conditional E-value: 1.2
  TMF_DNA_bd  45 lekeikelkkkleklekeleele 67 
                 ++  +++ ++ l+ +++e + l+
  KKY15519.1 500 MTDRLQQASNDLRAKTEEKDLLQ 522
                 33344444455555555555555 PP

  == domain 8  score: -2.0 bits;  conditional E-value: 1.4
  TMF_DNA_bd  16 qLmeEGekLskkelklnntikkLrkknkelek 47 
                 +L eE  +L+ +  k + ti++L   + e   
  KKY15519.1 527 ALTEESSQLQRELSKSRSTISELERALDEERH 558
                 45555555555555555555555554444433 PP

  == domain 9  score: 2.4 bits;  conditional E-value: 0.063
  TMF_DNA_bd  12 eqIaqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlkeae 74 
                 eqI++L  E     ++     ++ + Lr  ++ + k  +e  + l++ + +l+ele  l+++e
  KKY15519.1 580 EQIDNLHREVNSKDSQYASDQESWDALRRNLETAAKRAEEKASGLQRTVDKLQELEGNLSGKE 642
                 89999999**999*******************************************9999987 PP

  == domain 10  score: -2.0 bits;  conditional E-value: 1.4
  TMF_DNA_bd  22 ekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlk 71 
                 ++L+++ +++++    L+ +++el+++ +   +  e+   el++ +e+l+
  KKY15519.1 647 QALESEKQRHRQEEEVLNRQIQELNEDFSAKREASETARNELANAKEELR 696
                 8999999***************************************9985 PP

  == domain 11  score: -0.7 bits;  conditional E-value: 0.56
  TMF_DNA_bd  13 qIaqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlke 72 
                 qI++L e   + +      +n + + +++++ +  e++ lk+k+++le+e+e l++ l+e
  KKY15519.1 666 QIQELNEDFSAKREASETARNELANAKEELRISIREQAALKEKVDQLEEEIEVLQANLEE 725
                 7777777766666777778899999999999999*********************99986 PP

  == domain 12  score: 8.5 bits;  conditional E-value: 0.00079
  TMF_DNA_bd  20 EGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlkeae 74 
                 E +kL++ e+++ + + kLr++ + l  ++++ + +l +  +el  le+ ++++e
  KKY15519.1 731 EVQKLKSVEDAEGQ-LQKLRQEKQSLQDQLANVSIELHETKRELGDLESDAARME 784
                 89999999888765.679*******************************999876 PP

  == domain 13  score: 0.1 bits;  conditional E-value: 0.32
  TMF_DNA_bd  15 aqLmeEGekLskkelklnntikkLrkknkele....keikelkkkleklekeleele 67 
                  +L+ E ++L+k+ ++ ++  k L + n+ le     ei++ +++ ++l++e+++l+
  KKY15519.1 805 RELQREKQRLEKELDRARQETKALAESNASLEqeinAEIERATSEENRLNSEIDQLR 861
                 58******************************4444455555566666666666664 PP

  == domain 14  score: -0.5 bits;  conditional E-value: 0.51
  TMF_DNA_bd  20 EGekLskkelklnntikkLr.kknkelekeikel...kkkleklekeleeleerl 70 
                 E e+  ++e++ln  i++Lr +k++  e+  +el   k+k+++le  ++ele +l
  KKY15519.1 842 EIERATSEENRLNSEIDQLRhQKLASGENRDRELisaKNKVQRLELRVKELEGLL 896
                 67788899***********967888888555555322799999999999998766 PP

  == domain 15  score: -0.8 bits;  conditional E-value: 0.61
  TMF_DNA_bd  18 meEGekLskkelklnntikkLrkknkelekeikelkkkl 56 
                 ++ Ge+   +    +n++ +L   +kele  +++++  +
  KKY15519.1 865 LASGENRDRELISAKNKVQRLELRVKELEGLLNNQTAAI 903
                 223333333333444455555555555555555555444 PP

  == domain 16  score: 1.6 bits;  conditional E-value: 0.11
  TMF_DNA_bd  27 kelklnntikkLrkknkelekeikelkk 54 
                  e++l+++ k+L++ + ele e+ e+++
  KKY15519.1 931 REVELKASNKQLKASVFELERELHEMQR 958
                 5778888888899988888888887765 PP

  == domain 17  score: 4.8 bits;  conditional E-value: 0.011
  TMF_DNA_bd   25 skkelklnntikkLrkknkelekeikelkkk 55  
                  +   l+ ++++k+L++kn++le ++++    
  KKY15519.1  980 RQDLLDAEAALKELQSKNRDLERQVQRAAVD 1010
                  5566888999999999999999999988633 PP

  == domain 18  score: 4.3 bits;  conditional E-value: 0.015
  TMF_DNA_bd   20 EGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlke 72  
                  E e+Ls k  +    i++L+++++ l +e ++  +k e  + el  l++++++
  KKY15519.1 1027 EAEALSLKLSDRDDRISELKQQVQRLRQERSSSIDKAEAISTELGDLQRKYEK 1079
                  8899*********************9999999999999999999999988765 PP

>> HR1  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   2.8      0.36   9.2e+02      38      66 ..     242     270 ..     230     273 .. 0.80
   2 ?    2.6   1.7     0.058   1.5e+02      35      63 ..     298     326 ..     282     332 .. 0.78
   3 ?   15.4   3.1   5.8e-06     0.015      26      61 ..     345     380 ..     340     386 .. 0.88
   4 ?   -0.1   1.1      0.41     1e+03      31      58 ..     385     412 ..     379     415 .. 0.77
   5 ?    0.3   0.5      0.31   7.9e+02      53      65 ..     432     444 ..     423     448 .. 0.80
   6 ?   -5.0   5.7         7   1.8e+04       4      48 ..     450     491 ..     446     515 .. 0.56
   7 ?    5.0   5.2      0.01        27      37      63 ..     532     558 ..     502     565 .. 0.82
   8 ?    0.5   0.2      0.27   6.9e+02      48      66 ..     572     590 ..     567     593 .. 0.83
   9 ?   -3.2   9.4       3.9   9.9e+03      27      63 ..     635     672 ..     605     675 .. 0.87
  10 ?    1.2   3.1      0.16   4.1e+02      39      64 ..     690     722 ..     675     727 .. 0.66
  11 ?    2.9   2.9     0.045   1.2e+02      33      60 ..     734     761 ..     728     770 .. 0.86
  12 ?   -6.3  11.9         7   1.8e+04      25      57 ..     827     863 ..     780     873 .. 0.74
  13 ?    1.0   0.9      0.19   4.7e+02      41      65 ..     872     896 ..     869     900 .. 0.85
  14 ?   -2.3   0.1         2   5.1e+03      50      66 ..     910     926 ..     907     930 .. 0.86
  15 ?   -3.1   1.4       3.4   8.6e+03      36      62 ..     929     957 ..     912     962 .. 0.53
  16 ?   -2.2   2.5       1.8   4.6e+03      40      59 ..     986    1005 ..     973    1014 .. 0.50
  17 ?    5.0   2.8      0.01        26      40      65 ..    1031    1056 ..    1022    1059 .. 0.86
  18 ?   -3.6   0.1         5   1.3e+04      38      52 ..    1078    1092 ..    1074    1092 .. 0.84
  19 ?    0.3   0.7      0.31     8e+02      14      61 ..    1171    1219 ..    1165    1221 .] 0.64

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.36
         HR1  38 qeaeselsesnskielLreqLeelqasvq 66 
                  + + ++  ++++ el r qLee++ +v 
  KKY15519.1 242 HKFKKNIAQAEREAELYRLQLEEYRERVK 270
                 5666788889999999********99876 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.058
         HR1  35 kvrqeaeselsesnskielLreqLeelqa 63 
                 +++ ++es+ ++ + k+e+Lr ++ +l+a
  KKY15519.1 298 RLQKQVESTKDDESAKLEELRGEIGDLEA 326
                 489999***************99988876 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 5.8e-06
         HR1  26 leskktqnkkvrqeaeselsesnskielLreqLeel 61 
                 l+  ++++ ++ +e e el+++++kie+L+e+Le+ 
  KKY15519.1 345 LKENASKDSDACAELEDELESAKNKIEELQEELERA 380
                 5555999***************************96 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.41
         HR1  31 tqnkkvrqeaeselsesnskielLreqL 58 
                    +k r++a  e + ++ ++e+Lr+++
  KKY15519.1 385 RSARKEREDALEEKRMAEDNLEELRDEM 412
                 4567778888888888888******986 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.31
         HR1  53 lLreqLeelqasv 65 
                  L+eqLeelq+ +
  KKY15519.1 432 KLEEQLEELQDDH 444
                 69********866 PP

  == domain 6  score: -5.0 bits;  conditional E-value: 7
         HR1   4 elekklekElkireGAenllralesk.ktqnkkvrqeaeselsesn 48 
                 e ++kl+ E+ ++e    +     ++ ++  +++++e e+  +e +
  KKY15519.1 450 EMQQKLDQEKELQEHVRIVE----KEaASERRRLQSELETAFRERD 491
                 55666666666655433333....3546666665555555555544 PP

  == domain 7  score: 5.0 bits;  conditional E-value: 0.01
         HR1  37 rqeaeselsesnskielLreqLeelqa 63 
                  ++ + els+s+s i++L+++L e + 
  KKY15519.1 532 SSQLQRELSKSRSTISELERALDEERH 558
                 5789******************77665 PP

  == domain 8  score: 0.5 bits;  conditional E-value: 0.27
         HR1  48 nskielLreqLeelqasvq 66 
                 +++++lL+eq+  l+++v 
  KKY15519.1 572 KNEVDLLTEQIDNLHREVN 590
                 679**********999665 PP

  == domain 9  score: -3.2 bits;  conditional E-value: 3.9
         HR1  27 esk.ktqnkkvrqeaeselsesnskielLreqLeelqa 63 
                 e+  + +  k++q+ ese +  +++ e L++q++el+ 
  KKY15519.1 635 EGNlSGKESKLQQALESEKQRHRQEEEVLNRQIQELNE 672
                 45556788899************************995 PP

  == domain 10  score: 1.2 bits;  conditional E-value: 0.16
         HR1  39 eaeselsesns.......kielLreqLeelqas 64 
                  a+ el+ s +       k+++L+e++e lqa 
  KKY15519.1 690 NAKEELRISIReqaalkeKVDQLEEEIEVLQAN 722
                 444444444445567777************995 PP

  == domain 11  score: 2.9 bits;  conditional E-value: 0.045
         HR1  33 nkkvrqeaeselsesnskielLreqLee 60 
                   k+ ++ae +l++ +++ + L++qL+ 
  KKY15519.1 734 KLKSVEDAEGQLQKLRQEKQSLQDQLAN 761
                 447899********************86 PP

  == domain 12  score: -6.3 bits;  conditional E-value: 7
         HR1  25 alesk.ktqnkkvrqeaeselsesns...kielLreq 57 
                 al+ + ++  +++ +e e   se n+   +i++Lr+q
  KKY15519.1 827 ALAESnASLEQEINAEIERATSEENRlnsEIDQLRHQ 863
                 3333446666666666666666666666699999988 PP

  == domain 13  score: 1.0 bits;  conditional E-value: 0.19
         HR1  41 eselsesnskielLreqLeelqasv 65 
                 + el ++++k++ L+ + +el++  
  KKY15519.1 872 DRELISAKNKVQRLELRVKELEGLL 896
                 57999**************999854 PP

  == domain 14  score: -2.3 bits;  conditional E-value: 2
         HR1  50 kielLreqLeelqasvq 66 
                 ++++Lr+ L+e +++++
  KKY15519.1 910 EVSILRRDLSEARKRET 926
                 5899******9999875 PP

  == domain 15  score: -3.1 bits;  conditional E-value: 3.4
         HR1  36 vrqeaeselsesns..kielLreqLeelq 62 
                 +++e+e++ s  +    + +L+++L e+q
  KKY15519.1 929 LQREVELKASNKQLkaSVFELERELHEMQ 957
                 34444444444333445556666666665 PP

  == domain 16  score: -2.2 bits;  conditional E-value: 1.8
         HR1   40 aeselsesnskielLreqLe 59  
                  ae+ l+e +sk + L++q +
  KKY15519.1  986 AEAALKELQSKNRDLERQVQ 1005
                  33333333333333333333 PP

  == domain 17  score: 5.0 bits;  conditional E-value: 0.01
         HR1   40 aeselsesnskielLreqLeelqasv 65  
                    ++ls+ + +i++L++q ++l++++
  KKY15519.1 1031 LSLKLSDRDDRISELKQQVQRLRQER 1056
                  5689*******************965 PP

  == domain 18  score: -3.6 bits;  conditional E-value: 5
         HR1   38 qeaeselsesnskie 52  
                  ++++s+ls s+++++
  KKY15519.1 1078 EKVKSRLSTSKNRLD 1092
                  789999999999986 PP

  == domain 19  score: 0.3 bits;  conditional E-value: 0.31
         HR1   14 kireGAenllralesk.ktqnkkvrqeaeselsesnskielLreqLeel 61  
                  k+r+G   +l + + + ++++ k+ ++    l+++++ +e  r++L++l
  KKY15519.1 1171 KLRAGVHVILATVKMRkMEDDWKQMRKIGDGLKKAKTAMERRRSSLRQL 1219
                  6666666666666655577777777777666666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3249  (0.181215); expected 358.6 (0.02)
Passed bias filter:                      677  (0.0377601); expected 358.6 (0.02)
Passed Vit filter:                       352  (0.019633); expected 17.9 (0.001)
Passed Fwd filter:                       206  (0.0114898); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 7.20u 0.49s 00:00:07.69 Elapsed: 00:00:01.34
# Mc/sec: 2756.74
//
Query:       KKY15520.1  [L=622]
Description: putative regulatory factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-95  321.0  11.3    6.6e-88  295.6   0.0    2.0  2  SGT1            SGT1 protein
  ------ inclusion threshold ------
      0.045   14.2   4.1      0.084   13.4   3.0    2.0  2  DUF4598         Domain of unknown function (DUF4598)
       0.11   12.9   4.5        5.5    7.3   2.0    2.3  2  Tub_N           Tubby N-terminal
       0.12   12.2   0.0       0.27   11.1   0.0    1.5  1  eIF-1a          Translation initiation factor 1A / IF-1
       0.17   10.0   6.2       0.27    9.3   6.2    1.2  1  Sporozoite_P67  Sporozoite P67 surface antigen
        0.6    8.1  17.6       0.94    7.5  17.6    1.2  1  DNA_pol_phi     DNA polymerase phi
        9.5    4.4   6.9         13    3.9   6.9    1.1  1  CDC45           CDC45-like protein


Domain annotation for each model (and alignments):
>> SGT1  SGT1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.6   0.0   2.6e-91   6.6e-88       1     305 [.      28     332 ..      28     344 .. 0.95
   2 !   25.4  10.8   1.8e-09   4.5e-06     364     541 ..     333     527 ..     325     582 .. 0.72

  Alignments for each domain:
  == domain 1  score: 295.6 bits;  conditional E-value: 2.6e-91
        SGT1   1 veYklflkqedssdkekeeeklqelleeilakvapllveYiWqkdpFnLkvrtekgdlpahlgGvtkfGdnieDEWFiVyLlkeitkefpelvarvedn 99 
                 veY++fl +++  ++++ +++l+e+++ + +  +++l++YiWq++ F L++++  +d ++ l G+t++Gd++eDEW iV+Ll+e++k+f el +++ dn
  KKY15520.1  28 VEYSIFLFTQSWYSEDTIRSQLREVQKAAAQLQKQYLKDYIWQRQGFGLELSK--EDGLSILRGRTEYGDSVEDEWVIVWLLRELSKQFKELHIKIVDN 124
                 89******99*999************************************998..777899************************************** PP

        SGT1 100 dgeflLieaaevlPkWlnPdtsenrvfiykGelhiipkssksseve.lkakepslsqalellsknpeetlasesiqsaikkrlkgYpekikeslhrahv 197
                 dgeflLieaa +lP Wl+Pd ++nrv+i +G l ii+ + + +  +   ++++ l+ a +ll + p++++ s si++    rl++Yp +i e++h+a v
  KKY15520.1 125 DGEFLLIEAAGTLPAWLEPDVADNRVWINQGGLVIIKPEDEGKYRKkAISEQLDLRIARQLLLTGPKRLMRSASIEEEAFYRLRNYPHQIAENIHHAIV 223
                 ************************************888777766668899************************************************ PP

        SGT1 198 yvPasvaavLkqrPsLvapAVqaFylRdpvdlkacrtmktFppetrvltsvtftrclYAqLvqqkftpdkrsgyklpsrsdpe.ykaaelGmklAhGfE 295
                  vP +va++L+q+Ps ++pAV+aFylRdp++lk +++  tF p++ v+ s+ + r  YAqL  q f p+k    +lp++ d++ y+  e Gmk+++G+E
  KKY15520.1 224 TVPRKVAYLLHQKPSYISPAVEAFYLRDPISLKPLQNQLTFGPDDLVTISIAIPRVGYAQLKSQDFPPPKAWEKSLPAKGDSKrYNPIETGMKISCGLE 322
                 ***********************************************************************7777****66666*************** PP

        SGT1 296 iLcskakkas 305
                 +L++  ++++
  KKY15520.1 323 MLVADPQSQD 332
                 ***9877654 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 1.8e-09
        SGT1 364 sspgeeilelLksaleleleelkkee...eelppedddsWLeiseeeLdkllqeragekelveesskeeeasydleevtksmkaFld.kvSsheGaelP 458
                 +  ++e++ lL+  l++  e+l ++    +  ++edd++WL+is e+L+k l  r+g ++    s  ++ a+ +l++++ + ++Fl+ ++++ eGa l 
  KKY15520.1 333 KPAVREMKMLLDD-LDTGDEQLPSDTvisAWEQREDDEKWLNISFEDLEKELGGRTGFNDAG--SFGDKGAQENLQRIVAQFEKFLNdEAAGPEGAGLF 428
                 4555666666654.666666666554111233689**********************88877..778889999*************7357899****94 PP

        SGT1 459 e......................skeekevsfdvdsflkalekllgskieeeldsddldedssedsdeedeedeeeeeaeeeskeeekeslksYmdqmd 535
                 +                      ++e+k+vsf++d+ +k +++++g+     + +  + ++ s++s    +e       ++e+++ + e ++s++ q++
  KKY15520.1 429 DestddelnsdddisddddddeeEEEDKDVSFSDDQLAKMMREMMGMPS-SSTPRMTIPSSPSKNSAGRFQEL-----GSNEEEDPTVEDIESFSRQIE 521
                 444445555555555555666559999*******************983.33334344444444444444432.....36788899999********** PP

        SGT1 536 eELaqt 541
                  EL+++
  KKY15520.1 522 AELNES 527
                 ***976 PP

>> DUF4598  Domain of unknown function (DUF4598)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       6.2   1.6e+04     105     111 .]     333     339 ..     319     361 .. 0.60
   2 ?   13.4   3.0   3.3e-05     0.084      51     108 ..     426     485 ..     424     487 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 6.2
     DUF4598 105 kpkIeEl 111
                 kp + E+
  KKY15520.1 333 KPAVREM 339
                 4444443 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3.3e-05
     DUF4598  51 Gvleekrdeesesdsdsssddedsesdekeesakke..kesnvldkllgkkskskkkpkI 108
                 G+ +e++d+e +sd+d s+dd+d+e++e++++++ +  + ++++++++g +s+s+ + +I
  KKY15520.1 426 GLFDESTDDELNSDDDISDDDDDDEEEEEDKDVSFSddQLAKMMREMMGMPSSSTPRMTI 485
                 8899*****9888888888888777777666665554466799********999988887 PP

>> Tub_N  Tubby N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   2.0    0.0022       5.5     161     207 ..     438     489 ..     319     490 .. 0.76
   2 ?    5.8   0.0    0.0062        16      35      92 ..     502     561 ..     492     590 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0022
       Tub_N 161 fde.....eedleeekeeskkssssaeensstrpeSasskkssketssapsP 207
                 +d+     ++d+eee+e+++ s s+ ++ ++ r+     ++s+ + + + sP
  KKY15520.1 438 SDDdisddDDDDEEEEEDKDVSFSDDQLAKMMREMMGMPSSSTPRMTIPSSP 489
                 3335554355666666666789999999999998877777777777777777 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0062
       Tub_N  35 rreeqaPLvesqlsvsssvil..v.vke.nvpeahkrsgahsalktkscggdgsekkggidg 92 
                   ee+ P ve   s+s+++    +   +   ++++k++g+++ + ++s+g++g++k  g  +
  KKY15520.1 502 SNEEEDPTVEDIESFSRQIEAelNeSGAlDLNRTQKKCGKQAPKHITSGGEKGKGKATG--P 561
                 4689*******999999999955353345788888888999888889999999999884..2 PP

>> eIF-1a  Translation initiation factor 1A / IF-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0001      0.27      37      54 ..     148     165 ..     131     173 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
                 CT----TT-EEEEEE-TT CS
      eIF-1a  37 nkiwikrGdyVlVelspy 54 
                 n++wi++G+ V++++ ++
  KKY15520.1 148 NRVWINQGGLVIIKPEDE 165
                 9**************665 PP

>> Sporozoite_P67  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   6.2    0.0001      0.27     106     182 ..     437     511 ..     426     519 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0001
  Sporozoite_P67 106 neddkGskedseedddeeeeednkstsskdgkgskka..qpgvssssgsttsqtdlstklsqtglgasGshaqqdpavs 182
                     n+    +++ s++ddd+eeee++k  s  d++ +k      g+ sss+   +  +  +k s       Gs  ++dp+v 
      KKY15520.1 437 NS----DDDISDDDDDDEEEEEDKDVSFSDDQLAKMMreMMGMPSSSTPRMTIPSSPSKNSAGRFQELGSNEEEDPTVE 511
                     22....2233455555566666666665555444433125566555555444444556778888999999999999986 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  17.6   0.00037      0.94     615     729 ..     401     587 ..     392     598 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00037
  DNA_pol_phi 615 eegLellldvLearen....kegqaelfedededeeddeeeeeeddeededseeddde........................................ 668
                  +e+L++++++ e+  n      + a lf+++++de +++++ ++dd++de++eed+d                                         
   KKY15520.1 401 QENLQRIVAQFEKFLNdeaaGPEGAGLFDESTDDELNSDDDISDDDDDDEEEEEDKDVsfsddqlakmmremmgmpssstprmtipsspsknsagrfq 498
                  67788888776665442101446678897777777777777777677777777666668888899*********************999998777443 PP

  DNA_pol_phi 669 eesdedeededdedvdeidelreklaealgesg...............................ededdddsdsDedmdDeqMmaLDeqLae 729
                  e +++   +e+d  v++i+ + ++++++l+esg                                  d  +sd+D d dD +   +D +La+
   KKY15520.1 499 ELGSN---EEEDPTVEDIESFSRQIEAELNESGaldlnrtqkkcgkqapkhitsggekgkgkatGPPDLISSDEDGDFDDAEVNDIDINLAR 587
                  33333...555566666668*************99999999999999999999999999888876677777777788999999999988885 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   6.9    0.0053        13     108     160 ..     396     459 ..     387     530 .. 0.58

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0053
       CDC45 108 DDgdieeeleeereayealeeeeesd..........eede....eeeeeddddeeeeeeeeedeede 160
                  D+  +e+l++   ++e+  ++e +              +    ++++ +ddd+++eeee ed++ +
  KKY15520.1 396 GDKGAQENLQRIVAQFEKFLNDEAAGpegaglfdesT--DdelnSDDDISDDDDDDEEEE-EDKDVS 459
                 5666688899888888888888887744444443321..022321111122222222222.222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       897  (0.0500307); expected 358.6 (0.02)
Passed bias filter:                      662  (0.0369234); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.88u 0.38s 00:00:01.26 Elapsed: 00:00:00.58
# Mc/sec: 3248.04
//
Query:       KKY15521.1  [L=1277]
Description: putative mitochondrial translation initiation [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      5e-33  114.3   3.6    1.3e-31  109.6   3.6    2.5  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    2.1e-26   92.1   2.9    2.1e-26   92.1   2.9    2.4  3  IF-2         Translation-initiation factor 2
    1.5e-07   31.4   0.1    4.7e-07   29.9   0.1    1.9  1  MMR_HSR1     50S ribosome-binding GTPase
    1.7e-06   28.3   0.2      0.019   15.3   0.0    3.1  3  GTP_EFTU_D2  Elongation factor Tu domain 2
    7.8e-06   25.6   0.0    2.9e-05   23.8   0.0    2.1  2  IF2_N        Translation initiation factor IF-2, N-terminal r
     0.0055   16.9   1.0      0.087   13.0   0.3    2.7  2  ExbD         Biopolymer transport protein ExbD/TolR
  ------ inclusion threshold ------
      0.062   13.1   0.1       0.26   11.0   0.1    2.0  1  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
      0.066   12.7   0.3        0.2   11.2   0.3    1.8  1  FeoB_N       Ferrous iron transport protein B
       0.12   11.8   0.0       0.27   10.7   0.0    1.5  1  SRPRB        Signal recognition particle receptor beta subuni


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   3.6   6.8e-35   1.3e-31       5     190 ..     437     596 ..     434     600 .. 0.92

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 6.8e-35
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEET CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvda 103
                  i+i+ghvDhGKtT++d L +++ a s                  +  giT ++ a s+   + ++l++++DtPGH+ F +   rg++v+D++vlvv+a
  KKY15521.1 437 IITIMGHVDHGKTTILDYLRKSSVAAS------------------EHGGITQHIGAFSVRMPGVDRLMTFLDTPGHAAFLEMRRRGANVTDIVVLVVAA 517
                 589****************95555433..................467***********999************************************* PP

                 TTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHH CS
    GTP_EFTU 104 veGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealve 190
                 ++Gv+pqt e +++al+ +v+i+v+i K+D+ +a++++i++e+ +        +e+    g  +v+ +++S+++g+g+++l ea+  
  KKY15521.1 518 DDGVKPQTIEAIKHALAANVQIVVAISKVDKHDADVENIKHELTRYG------IEVEDLGG--NVQAIPVSGKTGQGMQDLEEAILA 596
                 ********************************************555......88888888..5*****************999876 PP

>> IF-2  Translation-initiation factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.3       2.5     5e+03      26      51 ..     525     546 ..     510     559 .. 0.70
   2 !   92.1   2.9   1.1e-29   2.1e-26      10     104 ..     763     859 ..     757     860 .. 0.93
   3 ?   -2.3   0.1       2.4   4.8e+03      14      57 ..     866     909 ..     861     938 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.5
                 HHHHHHHHHHCTT.SSTEEEECEEEE CS
        IF-2  26 sleAlkeaLekleseevkvkvihsgv 51 
                 ++eA+k+aL+      v++ v  s+v
  KKY15521.1 525 TIEAIKHALAAN----VQIVVAISKV 546
                 689999999874....5555554444 PP

  == domain 2  score: 92.1 bits;  conditional E-value: 1.1e-29
                 SCSSCCEEEEEESSHHHHHHHHHHHHCTT.SSTEEEECEEEESSB-HHHHHHHHHST..EEEEEESSSCTHHHHHCCCCCTSEEEEESSHHHHHHHH CS
        IF-2  10 eegkelnviikaDvqGsleAlkeaLekleseevkvkvihsgvGaitesDvelasasn..aiiigFnvkvskkakklaekegvkirlynvIYkliddv 104
                 ++ k++nv++kaDv+Gs+eA+ +a+++l+++ev+ ++i+sgvG+++ sD++++sa+   ++ii Fn  ++ ++ +lae+ gv+i  +n+IY++id v
  KKY15521.1 763 DSVKKVNVVVKADVTGSVEAVVDAISQLGNNEVRANIIRSGVGQVNLSDIQHVSATGeyGVIISFNQGTDGEMYRLAENAGVEILDHNIIYRVIDAV 859
                 3449***************************************************6556************************************88 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.4
                 CCEEEEEESSHHHHHHHHHHHHCTT.SSTEEEECEEEESSB-HH CS
        IF-2  14 elnviikaDvqGsleAlkeaLekleseevkvkvihsgvGaites 57 
                 +l+ +ik  v+G +e+l+ +   +++e +k+   +   G+i+++
  KKY15521.1 866 QLPPLIKHTVEGEAEVLQVFDIMVKKEIIKIAGCKITNGTINKE 909
                 66778899999999988755444444666666666666666665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.1   2.4e-10   4.7e-07       2     111 ..     438     542 ..     437     563 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 2.4e-10
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT..EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg..keielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldeele 98 
                 + i+G+   GK+t++  l ++ + +s++ g T++i  + v++ g  + ++++DtpG  +       l+ + +  + +d+++lvv a  +++kp+  e  
  KKY15521.1 438 ITIMGHVDHGKTTILDYLRKSSVAASEHGGITQHIGAFSVRMPGvdRLMTFLDTPG--H----AAFLEMRRRGANVTDIVVLVVAAD-DGVKPQTIEAI 529
                 789************************************9955544789*******..3....122333333333468999999766.66877755555 PP

                 HHHHHTTSEEEEE CS
    MMR_HSR1  99 elleeakkplilv 111
                 +    a+ +++++
  KKY15521.1 530 KHALAANVQIVVA 542
                 5544445555544 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00062       1.2       1      39 [.     624     655 ..     624     684 .. 0.76
   2 ?   -2.8   0.0       4.5   8.9e+03      30      61 ..     692     724 ..     680     730 .. 0.73
   3 !   15.3   0.0   9.6e-06     0.019       3      56 ..     896     947 ..     895     952 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00062
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissle 39 
                  G++a++ v +Gtl++Gd+v+    +t      tri+sl 
   KKY15521.1 624 GRLATILVRRGTLRPGDYVVA--GTT--W---TRIRSLR 655
                  8999****************8..544..2...5777665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.5
                  E.EEEEEEEEEEETEEESEEETTSEEEEEEEES CS
  GTP_EFTU_D2  30 e.ivtrissletfhededeavaganaGvivaik 61 
                  e +  +++ l  ++ ++  +++ a a + ++  
   KKY15521.1 692 EnQAKEVTELRIERDEMARLMDDATAINAARKE 724
                  236689999999999999999999998887765 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 9.6e-06
                  EEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEE CS
  GTP_EFTU_D2   3 valgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGv 56 
                  +a++++ +Gt++k   +r+  +++++    ++ ssl   ++d+de+++g  +G 
   KKY15521.1 896 IAGCKITNGTINKESPIRV--SRDNQLVFDGKLSSLKNVKKDVDEMRKGSECGM 947
                  799****************..555555677*********************997 PP

>> IF2_N  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.4e-08   2.9e-05       4      53 ..     359     407 ..     356     408 .. 0.92
   2 ?   -2.7   0.0       2.7   5.5e+03      28      38 ..     947     957 ..     944     957 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.4e-08
       IF2_N   4 irVyeLAkeLgvkskevikkLfkelGievkshsssLDeetaeliaeefgi 53 
                 i + +L k L v+ +  i++L +++G+e  s +++LD eta+lia+e+++
  KKY15521.1 359 IGIDQLSKLLRVPLEGFIRHL-EDMGFESPSRDHILDGETAALIANEYNY 407
                 56789****************.77************************97 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.7
       IF2_N  28 lGievkshsss 38 
                 +G+e ++++ss
  KKY15521.1 947 MGFENWNPNSS 957
                 9********97 PP

>> ExbD  Biopolymer transport protein ExbD/TolR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.3   4.4e-05     0.087      44     125 ..     690     800 ..     676     803 .. 0.70
   2 ?    0.9   0.0      0.24   4.8e+02      57      88 ..     911     942 ..     900     947 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.4e-05
        ExbD  44 sstqkeveekelirisisad..gsiy..............ldkka.vsveelaqklkerkakppdk...............ltvaikadkdvsygklve 110
                 +s+    ++ke+ +++i+ d   +++               ++++ + +e+ +++ k   + +p +               + v++kad + s++++v+
  KKY15521.1 690 ESEN---QAKEVTELRIERDemARLMddatainaarkeeaEQRARrLAWEATQERYKRHVKAQPRDnagwvependdsvkkVNVVVKADVTGSVEAVVD 785
                 3333...556666666665522333344444555555544344444677777777777666666669******************************** PP

        ExbD 111 vldtlkkagiekvsl 125
                 ++++l  +++ +  +
  KKY15521.1 786 AISQLGNNEVRANII 800
                 ******999987766 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.24
        ExbD  57 risisadgsiyldkkavsveelaqklkerkak 88 
                  i++s d+++ +d+k  s++++++ ++e+++ 
  KKY15521.1 911 PIRVSRDNQLVFDGKLSSLKNVKKDVDEMRKG 942
                 5899999*********************9986 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00013      0.26       4     121 ..     438     566 ..     436     594 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
   PduV-EutP   4 illiGkvgsGKttLtqalkgeelkYkk....tqaiefsd..........eviDtPGe..ylenrklysalivtsaeadvialvqdat...eeesvfppg 83 
                 i ++G+v+ GKtt+   l++ ++  +     tq i   +          +++DtPG   +le r+        +  +d+++lv++a+   +++++ + +
  KKY15521.1 438 ITIMGHVDHGKTTILDYLRKSSVAASEhggiTQHIGAFSvrmpgvdrlmTFLDTPGHaaFLEMRR------RGANVTDIVVLVVAADdgvKPQTIEAIK 530
                 7799***************9776554333337776433211111111114577777433555553......3444567777777766111455566667 PP

   PduV-EutP  84 fasvfnkeviGiitkidlaedeenieaveelLksaGae 121
                  a   n +++  i k+d+   ++++e+ +++L+  G+e
  KKY15521.1 531 HALAANVQIVVAISKVDKH--DADVENIKHELTRYGIE 566
                 7777788889999999998..999*******9999986 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3    0.0001       0.2       3     156 .]     438     594 ..     437     594 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT..EEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGGHHHHHHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkg..keveivDlPGiYslsayseeekvardflleeepdvvvnvvdatnlernLyLtl 99 
                 ++++G  + Gktt+++ l +++   + + G+t      ++++ g  + ++++D PG  ++ ++ +    ++d+++      +v  +d     +++  + 
  KKY15521.1 438 ITIMGHVDHGKTTILDYLRKSSVAASEHGGITQHIGAFSVRMPGvdRLMTFLDTPGHAAFLEMRRRGANVTDIVV------LVVAADDGVKPQTIEAIK 530
                 67899***************************9888888887654377899*****9887766554444444332......222233333445677777 PP

                 HHHHTTSSEEEEEETHHHHHHTTEEE-HHHHH.....HHHT..S-EEEEBTTTTBTHHHHHHHH CS
      FeoB_N 100 qllelgvpvvlalnmideaekkgieidlkkLs.....ekLg..vpvvktsakkkegieellkai 156
                   l  +v++v+a+ ++d+ +++  +i ++  +     e Lg  v+ +++s+k+++g+++l +ai
  KKY15521.1 531 HALAANVQIVVAISKVDKHDADVENIKHELTRygievEDLGgnVQAIPVSGKTGQGMQDLEEAI 594
                 7788888888888888887777777766654411112345434677999999999999998875 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00013      0.27       4      92 ..     436     526 ..     434     552 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00013
                 -EEEEE-STTSSHHHHHHHHHHSS---B-...--S.S-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHH CS
       SRPRB   4 pavllvGlsdsGKTslftrLttdsvkktv...tSq.essaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkev 92 
                 p++ ++G  d GKT+++  L + sv  +    + q    ++ ++    +  +t++D PGh  +  ++  +  + + +  lv   D  ++p+ +
  KKY15521.1 436 PIITIMGHVDHGKTTILDYLRKSSVAASEhggITQhIGAFSVRM-PGVDRLMTFLDTPGHAAFL-EMRRRGANVTDIVVLVVAADDGVKPQTI 526
                 67889****************99776665111344456666666.566788999******9873.3444434444444555555666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2333  (0.130124); expected 358.6 (0.02)
Passed bias filter:                      720  (0.0401584); expected 358.6 (0.02)
Passed Vit filter:                       199  (0.0110993); expected 17.9 (0.001)
Passed Fwd filter:                        57  (0.00317921); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.64u 0.44s 00:00:02.08 Elapsed: 00:00:00.61
# Mc/sec: 6329.22
//
Query:       KKY15522.1  [L=215]
Description: putative nadh-ubiquinone oxidoreductase 23 kda subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-14   51.2  15.4    5.6e-08   32.3   3.6    2.2  2  Fer4             4Fe-4S binding domain
    5.4e-13   49.3  10.1    8.2e-13   48.7  10.1    1.3  1  Fer4_7           4Fe-4S dicluster domain
    4.1e-10   40.5   7.4    6.6e-05   23.8   0.4    2.2  2  Fer4_16          4Fe-4S double cluster binding domain
    6.3e-10   39.0   4.7    0.00011   22.3   0.4    2.1  2  Fer4_21          4Fe-4S dicluster domain
    8.3e-09   35.4  21.1    1.8e-06   28.0  12.1    2.0  2  Fer4_10          4Fe-4S dicluster domain
    1.7e-08   34.8   2.9    0.00033   21.0   0.1    2.2  2  Fer4_8           4Fe-4S dicluster domain
    2.7e-08   33.9  10.0    5.3e-08   32.9  10.1    1.5  1  Fer4_9           4Fe-4S dicluster domain
    1.4e-06   28.1  17.1    0.00037   20.5   5.4    2.2  2  Fer4_6           4Fe-4S binding domain
      4e-06   26.6  12.1     0.0091   16.0   1.7    2.3  2  Fer4_2           4Fe-4S binding domain
    7.9e-06   26.0  11.4    0.00027   21.2   1.8    2.2  2  Fer4_4           4Fe-4S binding domain
    0.00026   21.5  11.4      0.057   14.0  12.6    2.3  3  Fer4_17          4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.027   14.7   5.8       0.66   10.2   0.2    2.2  2  c-SKI_SMAD_bind  c-SKI Smad4 binding domain
      0.048   14.2  14.8       0.69   10.5   4.3    2.7  2  Fer4_13          4Fe-4S single cluster domain of Ferredoxin I
      0.066   13.4   5.6       0.36   11.0   0.6    2.2  2  ETF_QO           Electron transfer flavoprotein-ubiquinone ox
       0.07   13.3   9.0        1.2    9.3   1.5    2.2  2  Fer4_18          4Fe-4S dicluster domain
       0.21   12.6  15.5       0.39   11.8   3.3    2.3  2  Fer4_3           4Fe-4S binding domain
       0.51   11.2  11.6        4.2    8.3   2.1    2.2  2  Fer4_22          4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   4.0   1.2e-08   1.3e-05       5      24 .]     113     132 ..     109     132 .. 0.94
   2 !   32.3   3.6   5.3e-11   5.6e-08       2      23 ..     149     170 ..     148     171 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.2e-08
                 TTTSSS-THHHHHSTTTEEE CS
        Fer4   5 eekCigCGaCvevCPvgAIt 24 
                 ee+Ci+C++C+ +CP  AIt
  KKY15522.1 113 EERCIACKLCEAICPAQAIT 132
                 89*****************7 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 5.3e-11
                 EEETTTSSS-THHHHHSTTTEE CS
        Fer4   2 videekCigCGaCvevCPvgAI 23 
                  id+ kCi+CG C e CPv+AI
  KKY15522.1 149 DIDMTKCIYCGFCQESCPVDAI 170
                 69*******************9 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7  10.1   7.8e-16   8.2e-13       1      52 []     115     169 ..     115     169 .. 0.90

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 7.8e-16
      Fer4_7   1 rCigCgaCvaaCpvkaieldeeenekgt...ekveidpekClgCgaCvavCPtga 52 
                 rCi C+ C+a Cp++ai+++ ee+e+g     +++id++kC++Cg C++ CP++a
  KKY15522.1 115 RCIACKLCEAICPAQAITIEAEEREDGSrrtTRYDIDMTKCIYCGFCQESCPVDA 169
                 8*******************999998553338889******************97 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   1.7   9.1e-07   0.00096       1      26 [.     115     140 ..     115     153 .. 0.75
   2 !   23.8   0.4   6.3e-08   6.6e-05       1      37 [.     154     190 ..     154     210 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 9.1e-07
     Fer4_16   1 rCgtCgkCaevCPtnaikekkekeie 26 
                 rC+ C+ C  +CP++ai+ ++e++ +
  KKY15522.1 115 RCIACKLCEAICPAQAITIEAEERED 140
                 6*****************88555544 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 6.3e-08
     Fer4_16   1 rCgtCgkCaevCPtnaikekkekeiearecisyntae 37 
                 +C+ Cg C e+CP++ai e  ++e+++++ ++   ++
  KKY15522.1 154 KCIYCGFCQESCPVDAIVESPNAEYATETREELLYNK 190
                 5*****************9955555444433332222 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.4     1e-07   0.00011      33      58 ..     108     132 ..     100     133 .. 0.84
   2 !   18.5   0.4   1.5e-06    0.0016       3      32 ..     150     176 ..     143     186 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1e-07
     Fer4_21  33 vlkvvedeCvGCnlCssvCPvedcie 58 
                 ++++ e++C++C+lC ++CP  ++i+
  KKY15522.1 108 RYPTGEERCIACKLCEAICPA-QAIT 132
                 567789**************5.8887 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 1.5e-06
     Fer4_21   3 idedkCigCgkCliaCedtshqaieidakt 32 
                 id  kCi Cg C  +C+   ++ai  ++++
  KKY15522.1 150 IDMTKCIYCGFCQESCP---VDAIVESPNA 176
                 78888888888888888...6888666554 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0  12.1   1.7e-09   1.8e-06       6      56 .]     113     166 ..     111     166 .. 0.83
   2 !   19.8   1.6   6.2e-07   0.00066       4      24 ..     150     173 ..     147     192 .. 0.71

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.7e-09
     Fer4_10   6 ddtCirCgkCvkaCPadl...tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 +++Ci C+ C + CPa++   ++ + ++   +  + ++++ kC+ cg C+e+CP
  KKY15522.1 113 EERCIACKLCEAICPAQAitiEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCP 166
                 589*************9987555555555666666677***************9 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 6.2e-07
     Fer4_10   4 idddtCirCgkCvkaCPadl...t 24 
                 id  +Ci Cg C+++CP+d+   +
  KKY15522.1 150 IDMTKCIYCGFCQESCPVDAiveS 173
                 8999**************775531 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.3   4.5e-05     0.048       3      18 ..     114     129 ..     107     150 .. 0.72
   2 !   21.0   0.1   3.2e-07   0.00033       2      17 ..     152     178 ..     151     209 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.5e-05
      Fer4_8   3 ekCieCgaCqsaCpvl 18 
                 e+Ci C +C++ Cp+ 
  KKY15522.1 114 ERCIACKLCEAICPAQ 129
                 5799999999999843 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 3.2e-07
      Fer4_8   2 lekCieCgaCqsaCp...........v 17 
                 + kCi Cg+Cq++Cp            
  KKY15522.1 152 MTKCIYCGFCQESCPvdaivespnaeY 178
                 789***********9444333333322 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9  10.1     5e-11   5.3e-08       1      51 []     115     170 ..     115     170 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 5e-11
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraase.....eaCigCgaCveaCpkgai 51 
                 +C+ C+ C++ Cpa++++ +a er++  r++       ++Ci Cg C e Cp +ai
  KKY15522.1 115 RCIACKLCEAICPAQAITIEAEEREDGSRRTTRydidmTKCIYCGFCQESCPVDAI 170
                 6********************9999999887778*******************987 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   5.4   3.5e-07   0.00037       6      24 .]     113     131 ..     113     131 .. 0.95
   2 !   13.5   3.8   5.3e-05     0.056       4      24 .]     150     170 ..     149     170 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.5e-07
      Fer4_6   6 pdkCigCgdCvrvCPegai 24 
                 +++Ci C  C+++CP++ai
  KKY15522.1 113 EERCIACKLCEAICPAQAI 131
                 589***************8 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 5.3e-05
      Fer4_6   4 idpdkCigCgdCvrvCPegai 24 
                 id  kCi Cg C   CP +ai
  KKY15522.1 150 IDMTKCIYCGFCQESCPVDAI 170
                 8999**************998 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   3.1     1e-05     0.011       6      22 .]     112     128 ..     107     128 .. 0.87
   2 !   16.0   1.7   8.6e-06    0.0091       4      21 ..     149     166 ..     146     167 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1e-05
      Fer4_2   6 dtdrCigCgaCvsaCPa 22 
                  ++rCi+C+ C   CPa
  KKY15522.1 112 GEERCIACKLCEAICPA 128
                 689********999**8 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 8.6e-06
      Fer4_2   4 vvdtdrCigCgaCvsaCP 21 
                  +d  +Ci Cg C+ +CP
  KKY15522.1 149 DIDMTKCIYCGFCQESCP 166
                 57888************* PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   1.8   2.6e-07   0.00027       2      17 .]     114     129 ..     113     135 .. 0.93
   2 !    9.8   2.4    0.0011       1.2       3      16 ..     154     167 ..     152     174 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.6e-07
      Fer4_4   2 erCigCgsCvaaCPqg 17 
                 erCi C+ C+a+CP +
  KKY15522.1 114 ERCIACKLCEAICPAQ 129
                 8*************65 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0011
      Fer4_4   3 rCigCgsCvaaCPq 16 
                 +Ci Cg C  +CP+
  KKY15522.1 154 KCIYCGFCQESCPV 167
                 8************7 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   2.7    0.0002      0.21      43      58 ..     113     128 ..      84     131 .. 0.84
   2 !   14.0  12.6   5.4e-05     0.057       1      58 [.     115     167 ..     115     170 .. 0.73
   3 !   13.3   1.9   8.7e-05     0.091       1      29 [.     154     182 ..     154     201 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
     Fer4_17  43 aslCieCgeCerkCPq 58 
                  ++Ci C++Ce+ CP+
  KKY15522.1 113 EERCIACKLCEAICPA 128
                 579************7 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 5.4e-05
     Fer4_17   1 rCiqCgyClpeCpsyeaydnepkkllraaklglleeaekeekaslCieCgeCerkCPq 58 
                 rCi C+ C++ Cp  +++ + ++      + g+ +++  +  + +Ci Cg C+++CP 
  KKY15522.1 115 RCIACKLCEAICPAQAITIEAEE-----REDGSRRTTRYDIDMTKCIYCGFCQESCPV 167
                 7************9988555322.....2223333333356899*************6 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 8.7e-05
     Fer4_17   1 rCiqCgyClpeCpsyeaydnepkkllraa 29 
                 +Ci Cg+C ++Cp  ++ ++ +++++ ++
  KKY15522.1 154 KCIYCGFCQESCPVDAIVESPNAEYATET 182
                 6************9888666555555443 PP

>> c-SKI_SMAD_bind  c-SKI Smad4 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00062      0.66      13      43 ..     101     131 ..      96     144 .. 0.81
   2 ?    7.7   0.7    0.0039       4.2      13      38 ..     140     165 ..     132     184 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00062
  c-SKI_SMAD_bind  13 kGlfvpelyssseakCikCleCkllfspqkF 43 
                      +G  + ++y + e +Ci C+ C+++  +q  
       KKY15522.1 101 RGEHALRRYPTGEERCIACKLCEAICPAQAI 131
                      67888899***************99877765 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0039
  c-SKI_SMAD_bind  13 kGlfvpelyssseakCikCleCkllf 38 
                      +G   +++y  + +kCi C  C+   
       KKY15522.1 140 DGSRRTTRYDIDMTKCIYCGFCQESC 165
                      67788999**************9765 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   4.3   0.00065      0.69       4      18 ..     114     128 ..     113     129 .. 0.91
   2 ?    8.6   2.4    0.0025       2.6       1      17 [.     150     166 ..     150     167 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00065
     Fer4_13   4 dtCiacgaCvelaPd 18 
                 ++Ciac++C +++P 
  KKY15522.1 114 ERCIACKLCEAICPA 128
                 89************5 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0025
     Fer4_13   1 VDrdtCiacgaCvelaP 17 
                 +D  +Ci cg C e +P
  KKY15522.1 150 IDMTKCIYCGFCQESCP 166
                 7999************9 PP

>> ETF_QO  Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.6   0.00034      0.36      72     100 ..     113     141 ..     101     145 .. 0.85
   2 ?    9.1   1.4    0.0014       1.4      50      90 ..     126     170 ..     125     177 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00034
                 CCC--S--HHHHH-TT--EEE---STT-C CS
      ETF_QO  72 aqnCvhCktCdikdpsqniewvvPeGggG 100
                  + C+ Ck C+   p q i+ ++ e  +G
  KKY15522.1 113 EERCIACKLCEAICPAQAITIEAEEREDG 141
                 578*****************999888777 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0014
                 -TTS-EEEEETT....TTSSEEEEE-CCC--S--HHHHH-TT--E CS
      ETF_QO  50 CPagvyeivede....eakekklqinaqnCvhCktCdikdpsqni 90 
                 CPa+   i  +e    + +++++ i+ + C++C  C+   p + i
  KKY15522.1 126 CPAQAITIEAEEredgSRRTTRYDIDMTKCIYCGFCQESCPVDAI 170
                 9998876665442122467889**************988887766 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.5    0.0011       1.2      55      74 ..     110     129 ..     100     135 .. 0.81
   2 ?    8.3   1.2    0.0023       2.5      45      74 ..     139     168 ..     129     173 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0011
     Fer4_18  55 ekgagdcidcescvkvcPtg 74 
                  +g+  ci+c+ c ++cP +
  KKY15522.1 110 PTGEERCIACKLCEAICPAQ 129
                 467788************75 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0023
     Fer4_18  45 kalkekeerkekgagdcidcescvkvcPtg 74 
                 ++ +++ +r + ++++ci c++c + cP++
  KKY15522.1 139 EDGSRRTTRYDIDMTKCIYCGFCQESCPVD 168
                 4445556666778899************86 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.4     0.016        17       1      12 [.     116     127 ..     116     130 .. 0.90
   2 ?   11.8   3.3   0.00037      0.39       1      15 []     155     169 ..     155     169 .. 0.97

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.016
      Fer4_3   1 CtgCgaCvevCP 12 
                 C+ C +C+  CP
  KKY15522.1 116 CIACKLCEAICP 127
                 9*********** PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00037
      Fer4_3   1 CtgCgaCvevCPvgA 15 
                 C+ Cg C e+CPv+A
  KKY15522.1 155 CIYCGFCQESCPVDA 169
                 9************98 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.3    0.0048       5.1       1      24 [.     115     138 ..     115     149 .. 0.66
   2 ?    8.3   2.1     0.004       4.2      76      94 ..     149     167 ..     142     169 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0048
     Fer4_22   1 rClsCgaCtlvCptCsCfdvedet 24 
                 rC++C  C ++Cp+   +   +e 
  KKY15522.1 115 RCIACKLCEAICPAQAITIEAEER 138
                 7************86544444443 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.004
     Fer4_22  76 kfgesgCvGCgRCieacpv 94 
                  +++++C+ Cg C+e+cpv
  KKY15522.1 149 DIDMTKCIYCGFCQESCPV 167
                 5688899999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.51u 0.31s 00:00:00.82 Elapsed: 00:00:00.51
# Mc/sec: 1274.26
//
Query:       KKY15523.1  [L=152]
Description: putative acyl carrier protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-10   40.5   0.3    4.1e-10   39.9   0.3    1.3  1  PP-binding    Phosphopantetheine attachment site
    3.6e-05   23.9   0.1    5.3e-05   23.4   0.1    1.2  1  PP-binding_2  Acyl-carrier


Domain annotation for each model (and alignments):
>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.3   4.5e-14   4.1e-10       4      67 .]      69     134 ..      67     134 .. 0.85

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 4.5e-14
  PP-binding   4 relvaevlgv.pleeidpdtdlf.dlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67 
                  +l++   +v +++ i+ ++++  dlGlDSl++ve+++a+eeef +eip+ +  +  ++ + + y+
  KKY15523.1  69 MDLLKNFDKVsDASKISGTSHFVnDLGLDSLDTVEVVMAIEEEFSIEIPDKEADAIHSVDQAVTYI 134
                 566666667745555999999**99****************************9999999998886 PP

>> PP-binding_2  Acyl-carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1     6e-09   5.3e-05      20      87 ..      69     137 ..      62     141 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 6e-09
  PP-binding_2  20 ekvlrkgekvtpsskleelrt.redrlwdgldtvefvedveelfdvivsdevadnfetlqeiadlvvae 87 
                     +l++ +kv+ +sk++      +d   d+ldtve v+ +ee f + ++d+ ad ++++++   ++ a+
    KKY15523.1  69 MDLLKNFDKVSDASKISGTSHfVNDLGLDSLDTVEVVMAIEEEFSIEIPDKEADAIHSVDQAVTYICAQ 137
                   5688999999999999876541567779***************************99998887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.49
# Mc/sec: 929.59
//
Query:       KKY15524.1  [L=341]
Description: putative 40s ribosomal protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-65  218.6   0.0    3.4e-64  216.0   0.0    1.9  1  Ribosomal_S2  Ribosomal protein S2
  ------ inclusion threshold ------
      0.014   15.0   0.0      0.028   14.0   0.0    1.4  1  LDcluster4    SLOG cluster4 family


Domain annotation for each model (and alignments):
>> Ribosomal_S2  Ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.0   0.0   3.7e-68   3.4e-64       1     215 []     112     307 ..     112     307 .. 0.91

  Alignments for each domain:
  == domain 1  score: 216.0 bits;  conditional E-value: 3.7e-68
  Ribosomal_S2   1 LLeagvhfGhqtrrwnpkmkpyIygerngihiidlektlaalrraykvvkevaakggkilfvgtkkqakeavkeaakrangyyvnerWlgGtLTNfk 97 
                   LL+ ++h+G++t++wnp++++yI g+r+gihii+l+ t+a+lrra+kvv+eva++gg ilfvgt+++++e+v + ak a+g++v+++W++G+LTN +
    KKY15524.1 112 LLACQTHLGQATSLWNPRNSSYISGVRDGIHIISLDVTAAYLRRACKVVEEVARRGGLILFVGTRDGQQELVVRSAKLAGGFHVFDKWVPGSLTNGQ 208
                   89*********************************************************************************************** PP

  Ribosomal_S2  98 tikksikklkeleeleedgeldltkkealklkkekekleknlggikkmkklPdlvvvldpkkekiavkEakklgipviaivDtnvdpdlvdypIpaN 194
                   +i  + k  + ++++          ke  +l+         l+  ++  + Pdlvv+l+p +++++++E+  +++p+i+ivDt++d ++v+ypIpaN
    KKY15524.1 209 QILGHCKL-QIVDAK---------DKEITRLR-------PLLR--DQPVSRPDLVVCLNPLENEVCLHECGLYNVPTIGIVDTDADASWVTYPIPAN 286
                   *****655.444433.........33333333.......3333..355689********************************************** PP

  Ribosomal_S2 195 ddsirsiklilgvladaieeg 215
                   dds+rs++li+g+l+++++ g
    KKY15524.1 287 DDSLRSVTLIAGALGRSGQAG 307
                   ***************999876 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.1e-06     0.028      17      60 ..     151     195 ..     143     196 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.1e-06
  LDcluster4  17 ealelaeelGrliAkeg.avlltGgrtGvmeaaskGakeagGltv 60 
                   l++a+++ +++A++g ++l+ G r+G  e + ++ak agG+ v
  KKY15524.1 151 AYLRRACKVVEEVARRGgLILFVGTRDGQQELVVRSAKLAGGFHV 195
                 557899********9962678899999***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 2115.30
//
Query:       KKY15525.1  [L=547]
Description: putative 60s ribosome biogenesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-50  170.2  38.4    4.6e-50  170.2  38.4    4.5  3  SURF6     Surfeit locus protein 6
    1.6e-16   60.6   1.9    1.6e-16   60.6   1.9    8.6  7  RRP14     60S ribosome biogenesis protein Rrp14


Domain annotation for each model (and alignments):
>> SURF6  Surfeit locus protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -10.5  20.8         2   1.8e+04      16      86 ..      38     113 ..      31     128 .. 0.31
   2 ?   -7.2  31.0         2   1.8e+04       5      71 ..     135     266 ..     130     317 .. 0.45
   3 !  170.2  38.4   5.2e-54   4.6e-50       1     199 []     325     523 ..     325     523 .. 0.93

  Alignments for each domain:
  == domain 1  score: -10.5 bits;  conditional E-value: 2
       SURF6  16 ekkkeekeeakk........eeeekaeekkakeeaeakkskkkkkkkkeaskkee..dlvFskldfedg.aekkskkkkkkk 86 
                 ++kk++ke++k+        ++ + a++  ++++a+a+k+ k+++++++     +  dl+  +   ++g +  ++++k+kk+
  KKY15525.1  38 QRKKQTKEQKKAarlakldpDNVKTAKDVMDERAAAAAKKRKRNEDDTA-----DpvDLSVEREMPKEGlK-PNDEQKPKKQ 113
                 3333333333332222222222222222222222222222222222222.....13355554433344431.2222222222 PP

  == domain 2  score: -7.2 bits;  conditional E-value: 2
       SURF6   5 eerrkkkeerkekkkeekeeakkeeeekaeekkakeeaeakkskkkkkkkkeas............................................. 58 
                 ee++k+k+e+++ k+e+k+ +++++++k+e +k++ +aea+++++++ + +e +                                             
  KKY15525.1 135 EEKKKRKAEKAAAKRERKRAKAEKAKAKHERQKER-KAEATSNEPTEGVLSEGEetdfddgeadlveaieiepspksqgktgpkrkasplpedlthess 232
                 66666666666666666554444444444433333.333332333332222222234554444555555555555555555555555555555555444 PP

       SURF6  59 ..............kkee.........dlvFskldf 71 
                               +  +         + + s++++
  KKY15525.1 233 kapstaspsppagpS--DfdspnihsaSSSISSIQV 266
                 444433333333330..0333444445666666666 PP

  == domain 3  score: 170.2 bits;  conditional E-value: 5.2e-54
       SURF6   1 eelleerrkkkeerkekkkeekeeakkeeeekaeekkakeeaeakkskkkkkkkkeaskkeedlvFskldfedgaekkskkkkkkk...kkkgptkkdp 96 
                 +elle+rrkk+eer+++kke +++ak+ee++k++e+ a++ ++  + +  ++ ++  s ++ +++F++++f dg++++++++   +   kkkg++  d+
  KKY15525.1 325 QELLEARRKKEEERRAHKKELRRKAKEEEAQKQDEEIARRFSPGGSGSLLASPRSPMS-ENMSFSFGRVAFGDGTQADATLSTLLDpvqKKKGSS--DT 420
                 69*****************************************996666665555554.3449******************99999986666777..** PP

       SURF6  97 kqaLkkleakkakleelkeekrkeieekekWekalakaeGeKvkDDeklLkkalKrkekeKkkskkeWkeRkekvekkkaarqkKReeNikkRkeekkd 195
                 +++L+++e+k a+l++l+++kr+eie+k++W +a +ka+G K+kDD++lLkkalKr+ek+K ks+keWk R+e+vek ++arqkKRe+N+kkRkee+++
  KKY15525.1 421 RSQLNAAEQKAARLAALDPAKRAEIEQKDMWLNARKKAHGDKLKDDTSLLKKALKRQEKQKGKSEKEWKARTEEVEKGIQARQKKREDNLKKRKEERGA 519
                 *************************************************************************************************99 PP

       SURF6 196 kkkk 199
                  +kk
  KKY15525.1 520 GGKK 523
                 8876 PP

>> RRP14  60S ribosome biogenesis protein Rrp14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   1.9   1.8e-20   1.6e-16       1      62 []       8      58 ..       8      58 .. 0.93
   2 ?   -2.7   2.7       1.1   9.6e+03      38      56 ..      62      80 ..      60      82 .. 0.68
   3 ?  -18.8  30.1         2   1.8e+04      35      58 ..     132     155 ..      95     175 .. 0.66
   4 ?   -2.6   0.6         1   9.1e+03      41      55 ..     293     311 ..     269     313 .. 0.49
   5 ?   -1.5   5.6      0.44     4e+03      28      41 ..     338     351 ..     319     367 .. 0.47
   6 !    4.1   0.4    0.0077        69      36      62 .]     413     440 ..     398     440 .. 0.72
   7 ?  -14.4  18.2         2   1.8e+04      34      42 ..     483     491 ..     446     525 .. 0.61

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 1.8e-20
       RRP14  1 rLeahnkfFdsLlslIPakfYlpkdeeeednskklkkqkkkkakkqtkeeskkaKraKLDPd 62
                rL++h+++Fd+LlslIPak+Y++     edns+    q+++  kkqtke++k+a+ aKLDPd
  KKY15525.1  8 RLKSHARAFDGLLSLIPAKLYYG-----EDNSD----QWQR--KKQTKEQKKAARLAKLDPD 58
                79*********************.....55555....9999..9*****************8 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.1
       RRP14 38 qkkkkakkqtkeeskkaKr 56
                 +k+   + +++++kk Kr
  KKY15525.1 62 TAKDVMDERAAAAAKKRKR 80
                5666666777777888777 PP

  == domain 3  score: -18.8 bits;  conditional E-value: 2
       RRP14  35 lkkqkkkkakkqtkeeskkaKraK 58 
                 l+  +kkk+k++ ++++++ KraK
  KKY15525.1 132 LSIEEKKKRKAEKAAAKRERKRAK 155
                 444444444444444444445544 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 1
       RRP14  41 kkakkqt....keeskkaK 55 
                 ++  k++     e+ ++a+
  KKY15525.1 293 AEDIKERlqarIEALRAAR 311
                 2222222211344555555 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 0.44
       RRP14  28 eednskklkkqkkk 41 
                  ++++k+l+ ++k+
  KKY15525.1 338 RRAHKKELRRKAKE 351
                 22222222222222 PP

  == domain 6  score: 4.1 bits;  conditional E-value: 0.0077
       RRP14  36 kkqkkkkakkqt.keeskkaKraKLDPd 62 
                 kk+    + +q  ++e+k+a+ a LDP+
  KKY15525.1 413 KKKGSSDTRSQLnAAEQKAARLAALDPA 440
                 34444445556668888889******95 PP

  == domain 7  score: -14.4 bits;  conditional E-value: 2
       RRP14  34 klkkqkkkk 42 
                 k  k +k+ 
  KKY15525.1 483 KSEKEWKAR 491
                 233333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2554  (0.142451); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                       176  (0.0098165); expected 17.9 (0.001)
Passed Fwd filter:                        71  (0.00396006); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.61u 0.40s 00:00:02.01 Elapsed: 00:00:00.61
# Mc/sec: 2721.84
//
Query:       KKY15526.1  [L=992]
Description: putative hydantoinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   9.2e-120  399.6   0.1   1.7e-119  398.8   0.1    1.4  1  DUF917          Protein of unknown function (DUF917)
    1.6e-28   99.6   0.9    3.3e-24   85.6   0.0    3.7  3  Hydant_A_N      Hydantoinase/oxoprolinase N-terminal region
    4.9e-27   95.0   7.1    7.6e-26   91.0   1.2    3.4  3  Hydantoinase_A  Hydantoinase/oxoprolinase
      5e-05   22.9   0.4      5e-05   22.9   0.4    2.8  2  BcrAD_BadFG     BadF/BadG/BcrA/BcrD ATPase family
     0.0021   16.7   5.4       0.32    9.5   0.1    2.8  3  MutL            MutL protein
  ------ inclusion threshold ------
      0.012   16.0   4.0       0.68   10.4   0.1    3.5  3  FtsA            Cell division protein FtsA


Domain annotation for each model (and alignments):
>> DUF917  Protein of unknown function (DUF917)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  398.8   0.1  5.6e-123  1.7e-119       1     350 []     599     975 ..     599     975 .. 0.96

  Alignments for each domain:
  == domain 1  score: 398.8 bits;  conditional E-value: 5.6e-123
                 GGHHHHHHHHHHTTTT-SS-HHHHHHHHTT-SBTT--EEEE-GGG--SEE..EEEEEEE-HHHHTT-SS-HH....HHHHHHHHHT--.EEEEE-SSSS CS
      DUF917   1 edlealatGaavLGtGGGGspysgylllrqaleegksvrvvsldelpddalvvvvgamGsptvieeklpsgdelleavealekllgrk.idavislEiG 98 
                 +dle +++G +vLG++GGG+p+s++++lr+ l++g+s+r +++++l+++++++++g+mGsp+v++e+l + +e+++a+  l+++l+++ +dav+ lEiG
  KKY15526.1 599 TDLEYMSRGMYVLGCAGGGNPESTRIMLRDQLRAGHSMRAIDCSSLKESDIIYWGGHMGSPAVSVERL-ASTETIDAIGVLMDYLRHDsFDAVMGLEIG 696
                 69*********************************99*******************************.9999************9999********** PP

                 CCHHHHHHH..HHHHHT-EEESB-SSSS--SSGGGSHHHHT.T----SEEEE-SSS-EEEEEE.---HHHHHHHHHHCTTTTTEEEEEEEEE-HHHHHH CS
      DUF917  99 GlNglvall..aaaklglpvvDaDgmGRAfPelqqttfava.gisltPlaladekgnvvllkkaqsdkavErllRaalvemgsfagvaaypmtgaelkr 194
                 G+Ngl ++l  + + ++ pv+DaD+mGRA+P+++qtt+a++   +l+P+a+ +++g+++l++k+++d++v+r+lRa ++emgs++g+aa+p++ + +++
  KKY15526.1 697 GANGLEPFLvgSTKYYDRPVIDADWMGRAYPTYWQTTLAAHkPGELVPCAIDSGDGKSILMTKTSNDEIVDRALRASCSEMGSRVGMAAKPTKTEYVQK 795
                 *********7777899*************************7569**********************99****************************** PP

                 --SBSHHHHHHHHHHHHHTT--.....-SHHHHHHHHHH..-EEEEEEEEE--------------EEEET....................EEEEEEESS CS
      DUF917 195 aavpgtlslalriGravaearea.k..dvveailealgg..gakvlfkGkivdverrteggfdvgevtiegldede.............grelkiefqN 275
                 ++v +t sla+riGr++a a+++ +  +v+e+i+e++gg  +ak+lf+Gki++verr+ +g+++ge+ti+++++d              g +l i+f+N
  KKY15526.1 796 YGVINTCSLAWRIGRCIAIAQQNnTvsTVAESIIEETGGkgAAKILFRGKITAVERRLYKGHSLGEITISATSDDIeenipgrmeavaqGGSLMIPFKN 894
                 *********************885266999***********999*************************9777665899**********99******** PP

                 SEEEEE..ET.....-SEETTSEEEEEHHB-SSSSB-TTTT.TS-EEEEEE---GGGS...SHHHH-S-....-....--- CS
      DUF917 276 Enllaeedge.....vlatvPDlIsvldaetgepigteelryGlrVtVlalpasekwr.teeglelvgPkaFGydleykpl 350
                 En+lae+  e     v+atvPDlIsvlda tg ++g++e++yGl+V+V+++++s++w+ t+ gle++gP+aFG+d++y+pl
  KKY15526.1 895 ENILAEHTTEakekrVIATVPDLISVLDAGTGYALGVPEYKYGLQVVVIGITCSPRWTsTPLGLEIGGPSAFGFDVPYQPL 975
                 ******554466677****************************************************************97 PP

>> Hydant_A_N  Hydantoinase/oxoprolinase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.0   1.1e-27   3.3e-24       1     177 [.       7     187 ..       7     188 .. 0.87
   2 ?    3.2   0.1     0.021        61       2      19 ..     290     307 ..     289     321 .. 0.85
   3 !    6.9   0.1    0.0016       4.6       9      63 ..     373     431 ..     368     436 .. 0.91

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 1.1e-27
  Hydant_A_N   1 rigIDvGGTfTDavaldeke......eevavlKllstpdavaegirealeevleesiprtskidvvrmGTTvatNallerkgervaLitt....kgfrd 89 
                 r+g+DvGGT+TDav+ld  +      ++ a++K+++t  +v++ i++a++ vle+s +++++i+  ++GTT ++Na+le++ +r++ + +    k f  
  KKY15526.1   7 RLGVDVGGTNTDAVLLDVSSasandhGVAASFKTPTT-SNVTKCITSAVQGVLESSSIARQDIECAVIGTTSFINAVLEQDARRLSKVAIlrlsKSFLR 104
                 689**************888999**9***********.********************************************66655554000144444 PP

  Hydant_A_N  90 lleigrqnrpdlfelrikkplvlyeevvevderveadgevlkpldeeevrealkalkaagvesiavvllhSylnp..ehElrvaeiarei 177
                 ++    ++ +          +++      vd+++ +dg+  +pl+e++v e  +++++ g++s++v+ ++S++    ++E rv+ei++++
  KKY15526.1 105 QIPPFSDWPKG-------LRSICEGYLGYVDGGLAIDGSQESPLNEKQVLEHCAEIRRLGIKSVVVAGVFSPIDEfwHQEDRVQEIVSKE 187
                 44444444444.......47899999999*******************************************9765589*******9986 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.021
  Hydant_A_N   2 igIDvGGTfTDavaldek 19 
                 i +D+GGT  D+ +l+++
  KKY15526.1 290 IVVDIGGTTSDVGVLEKG 307
                 89**********998865 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0016
  Hydant_A_N   9 TfTDavaldekeeevavlKllstpdavaegirealeevleesipr....tskidvvrmG 63 
                 T TD+v+  +  ++  ++K+ s +   + g re ++ +le++i+r    ++ i+v+ +G
  KKY15526.1 373 TTTDIVVSAGAADVGDKAKVSSLDSSFIAGARERISVLLENAIDRvktsPDPIKVILVG 431
                 89*********9***********************999999999888888899998887 PP

>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.016        47      82     100 ..       8      26 ..       1      58 [. 0.75
   2 !   91.0   1.2   2.5e-29   7.6e-26       1     173 [.     207     382 ..     207     390 .. 0.94
   3 ?    2.3   0.0     0.027        80     226     287 ..     412     466 ..     383     468 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.016
  Hydantoinase_A  82 ItfDmGGTstDvslikdge 100
                     +++D+GGT tD+ l++  +
      KKY15526.1   8 LGVDVGGTNTDAVLLDVSS 26 
                     789*********9987444 PP

  == domain 2  score: 91.0 bits;  conditional E-value: 2.5e-29
  Hydantoinase_A   1 rtetavvnAylspilreylesvekslekrgakarlmvmqsdGglvsadearkkpvetilSGPaaGvvgaaat..sklagekkvItfDmGGTstDv 93 
                     r ++ ++nA++    r+++++++++++  + +++l++ q dG +v+ ++a + p++t  SGP  +  gaa++  ++  ++ + I++D+GGT+ Dv
      KKY15526.1 207 RENACILNAAILKYARRTVREFRSAIKGLDLSCPLYLTQNDGTVVDCNTAAEYPLRTFSSGPTNSMRGAAYLsgMRSMDSGPTIVVDIGGTTSDV 301
                     678899******************************************************************7666778889************* PP

  Hydantoinase_A  94 slikdgevevsletei..agvkvrlpaldirtvgagGgsilvvdeggklrvgpesagadpgpacyrkGgteltvTDanlvLG 173
                      ++++g   ++    +  a+++v++ +  ++++g+gGgs + +++g+++ vgp+s+g +    +   Gg  lt+TD+ +  G
      KKY15526.1 302 GVLEKGGLPRQAPAYVsvADITVNYSMPLLHSIGLGGGSLV-RQDGQTITVGPDSVGHELVKEALVFGGSVLTTTDIVVSAG 382
                     *****9998888777767***********************.9999***************99*************998776 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.027
  Hydantoinase_A 226 anavrklsvergldpkeltlvvfGGaGaqhaaalaeelgvkkvivppyagvlsalGmalAdv 287
                      na++++    +  p+   ++ +GG++ ++a++     g ++ i pp   v++a+G+a+A v
      KKY15526.1 412 ENAIDRV----KTSPDPIKVILVGGGS-IVAPES--LKGASELIRPPFHDVANAVGAAIATV 466
                     3444444....7778887777777755.555554..46999******************976 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.4   1.7e-08     5e-05       1      72 [.       8      78 ..       8      93 .. 0.88
   2 ?    0.4   1.1      0.13   3.7e+02      29      87 ..     373     449 ..     290     476 .. 0.59

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.7e-08
                 EEEEE-SSEEEEEEEETTTEEEEEEEE--TTS-HHH.........HHHHHHHHHHT--GGGECEE..EEEST CS
  BcrAD_BadFG  1 vGiDgGsTttkavlmdekgevlgrgitnsanlesvrfeaaekvleealtealerageeeadieetylvgtgy 72
                 +G+D+G+T t avl+d ++   ++   ++a+++ + + ++ k +  a++ +le +   ++die  ++++t +
   KKY15526.1  8 LGVDVGGTNTDAVLLDVSSA-SANDHGVAASFKTPTTSNVTKCITSAVQGVLESSSIARQDIECAVIGTTSF 78
                 7****************976.77778888889999999*************************998887755 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.13
                  -...................TTS-HHH.........HHHHHHHHHHT--GGGECEE..EE.ESTTCCCTCTTBSEEE-. CS
  BcrAD_BadFG  29 s...................anlesvrfeaaekvleealtealerageeeadieetylvg.tgyGratlpekfekeiir 87 
                  +                   ++l+s  +++a++ ++  l++a++r +++++ i+ + ++g ++++  +l+   + e ir
   KKY15526.1 373 TttdivvsagaadvgdkakvSSLDSSFIAGARERISVLLENAIDRVKTSPDPIKVILVGGgSIVAPESLK--GASELIR 449
                  0333333333333333333345555667778888888888888888888888887755321333333333..5555555 PP

>> MutL  MutL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.6   0.00024      0.73       2      55 ..       8      61 ..       7      80 .. 0.74
   2 !    9.5   0.1   0.00011      0.32     227     264 ..     267     304 ..     253     324 .. 0.83
   3 ?   -2.0   0.0      0.35     1e+03     227     257 ..     671     698 ..     662     699 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00024
        MutL  2 lviDiGSttTkvtlvdlekvd...erllgqaeapTtveeedvleGleealeeleekl 55
                l +D+G t T ++l+d+++ +     + ++ ++pTt   ++v++++++a++ + e+ 
  KKY15526.1  8 LGVDVGGTNTDAVLLDVSSASandHGVAASFKTPTT---SNVTKCITSAVQGVLESS 61
                569**************8766643444444444555...58*********9998874 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00011
        MutL 227 TPaAvlkavellaeeeekglgdllvvDvGGaTTdvhsv 264
                  P   ++++  l+  ++ + g ++vvD+GG+T+dv   
  KKY15526.1 267 GPTNSMRGAAYLSGMRSMDSGPTIVVDIGGTTSDVGVL 304
                 57778999999999777789**************9665 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.35
        MutL 227 TPaAvlkavellaeeeekglgdllvvDvGGa 257
                 T +A++ ++  l++   ++++ ++++++GGa
  KKY15526.1 671 TIDAIGVLMDYLRH---DSFDAVMGLEIGGA 698
                 67888999999988...4578*********9 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.032        94       2      40 ..       9      53 ..       8     135 .. 0.80
   2 ?   10.4   0.1   0.00023      0.68       1      23 [.     290     323 ..     290     368 .. 0.72
   3 ?    1.3   0.1      0.15   4.5e+02      31      83 ..     471     531 ..     451     601 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.032
                EEEE-SSSEEEEEEETTEEEE.....EEEES-.-HHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxx.....xxxxxx.xxxxxxxxxxxx RF
        FtsA  2 lvDiGagktdvavaedgalvh.....lrvigv.ggngitkdiaka 40
                +vD+G++ td+++++ ++  +      ++ ++   +++tk i  a
  KKY15526.1  9 GVDVGGTNTDAVLLDVSSASAndhgvAASFKTpTTSNVTKCITSA 53
                79**********999977555555554444444445555555444 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00023
                 EEEEE-SSSEEEEEEETTEEEE...........E CS
                 xxxxxxxxxxxxxxxxxxxxxx...........x RF
        FtsA   1 alvDiGagktdvavaedgalvh...........l 23 
                 ++vDiG++++dv v+e+g+l             +
  KKY15526.1 290 IVVDIGGTTSDVGVLEKGGLPRqapayvsvadiT 323
                 69****************9655455544444440 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHT--HHHHHHHHHHH--S--..EEEEEHHHHH......GGGGSTTHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx......xxxxxxxxxxxxx RF
        FtsA  31 ngitkdiakalrtaveeAerikikyGsala..ekeigrkels......ggsalpnleelae 83 
                 + +++ + + +++a e A+ ++i+ +      +++i+  e++       +++++ +++++ 
  KKY15526.1 471 DIVQNTANQTVQQATEHAKTLAIERARRAGakPESISVVEIEsmplqyVTNQIRTIVKAIG 531
                 5667778888888888888888654443335656666555556666664444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (992 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.87u 0.37s 00:00:01.24 Elapsed: 00:00:00.56
# Mc/sec: 5296.89
//
Query:       KKY15527.1  [L=834]
Description: putative ncs1 nucleoside transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   8.4e-104  347.8  33.3   1.1e-103  347.3  33.3    1.2  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami
    1.4e-60  204.8   0.0    2.3e-60  204.1   0.0    1.2  1  GPP34           Golgi phosphoprotein 3 (GPP34)
  ------ inclusion threshold ------
      0.021   15.1   1.8      0.021   15.1   1.8    3.8  4  DUF996          Protein of unknown function (DUF996)


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.3  33.3  1.9e-107  1.1e-103       1     440 []      30     485 ..      30     485 .. 0.98

  Alignments for each domain:
  == domain 1  score: 347.3 bits;  conditional E-value: 1.9e-107
  Transp_cyt_pur   1 pvpeeeRtwktlnlfsiWlganlnintwvigalglalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvv 95 
                     p+p ++Rtw+t+ ++s+W    +++++w++ga+++a+gL+ wq+v++ii+g++i+a++ + +g++Ga+ ++ f +lsR+  G++gs l ++ r++
      KKY15527.1  30 PLPPSRRTWTTWAYISFWAINQICLSNWQLGASLVAFGLSVWQAVISIIIGKFIIAAVAVANGMVGAEWHIGFVVLSRYIWGVYGSYLAIIQRII 124
                     7899******************************************************************************************* PP

  Transp_cyt_pur  96 iaivwfgvqawiGsealllmlgkifgkwleigg...ailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaeg 187
                     + +vwf+vq w+G+ +++++l  if++ +++++   a+  + + ++v+ + f v++++++++ ++ki+k+  + +++  +  + + iwa+++a+g
      KKY15527.1 125 LSLVWFSVQSWTGGLCVQNILAAIFPSYQHMKNhfpASAHMDTKQFVGWVLFNVLMIPVIYVKPEKINKVVLYMNIVSVITLISIMIWAMSEAGG 219
                     ***************************999999888999999****************************************************9 PP

  Transp_cyt_pur 188 .Gpvldkavklg.kse...lflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilak 277
                      Gp+l+++++    se    ++ +v++ +++ a   +n pD++r+a+++  +v +q+ ++ ++ t+l l+g l ++a++ + g+ +w+p+di+++
      KKY15527.1 220 gGPLLSAPAAKMsSSElgwNIVLGVTTTIGSIAVGLTNQPDYSRFARKPGDQVFGQWFSIIVFGTILPLFGCLASSATQGIWGEAYWNPPDIVQR 314
                     99999988777756669998999************************************************************************ PP

  Transp_cyt_pur 278 fdet.......agvllililvalaqlgvnisanllsagldlaallPkkinikrgsliaavialvivpwkllssssklftaflsllavflspvagv 365
                     +++        a+ +++   + + ql++n   n  s g+d+a llP +ini+rg++i  +++++++pw+llss+s+ f++ ls+++vfl+p+ag+
      KKY15527.1 315 WLDDdynaksrAAAFFAGCGLVVCQLAINSIDNAFSTGMDAAGLLPSYINIRRGAFIGLILSIAMCPWELLSSAST-FISVLSAYSVFLGPMAGI 408
                     ***99***********************************************************************.****************** PP

  Transp_cyt_pur 366 iiadyfvvrrgylklaalytrrrgsaYwyrkgvNwravaayivGiaaglvgvagsvg..ikvvkgaeklfdlsylvG 440
                      i dyf+vr ++lkl +ly +r+ ++Y++++gvN+ra++++ivG a +l+g+a ++   i v+ g ++l++l+y +G
      KKY15527.1 409 QICDYFFVRGRKLKLSDLYHARPDGIYYFKSGVNYRAFISWIVGFASQLPGFANNITpsIVVPVGCQRLYYLAYPLG 485
                     ****************************************************9998899***************998 PP

>> GPP34  Golgi phosphoprotein 3 (GPP34)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.1   0.0   3.8e-64   2.3e-60      11     191 ..     568     783 ..     566     814 .. 0.93

  Alignments for each domain:
  == domain 1  score: 204.1 bits;  conditional E-value: 3.8e-64
       GPP34  11 ddekgrlsfandnlsyaLaGAiLiELalrgriavdk........eggrvv.vidsrptgdplldealklikaserprsvktwvdlls............ 88 
                 d  kg+lsf+ndn+syaL+G+i+iELa rgr+ ++k        +++rv+ vid++ tg++lldealk++k+se+ +sv++w+dl+s            
  KKY15527.1 568 DTLKGYLSFWNDNISYALRGCIVIELAFRGRVSMQKdssrrrfpLADRVIeVIDDTLTGEVLLDEALKMMKSSEK-MSVSSWIDLMSgetwnlmkigyq 665
                 6779*******************************************************************7777.*********************** PP

       GPP34  89 .ksvrervakgLvdkGilrtekrrflglfdmtthpvadtaakeavrrrvraaltsgepadp..............rtaaLvallaaagllenllpdl.. 170
                  k+vrer+akgLvdkGilrtekr+fl lfdm+thpv+d+ ak+++r+rvr++  +++   p              rt+++v+ ++aa++len+l     
  KKY15527.1 666 lKQVRERLAKGLVDKGILRTEKRNFL-LFDMATHPVVDSGAKDEIRKRVRNVCSNRTVVLPpsqflpedlefrylRTVTMVCAAYAANVLENALTTMgh 763
                 **************************.**************************888888556889999***************************99** PP

       GPP34 171 eareaa.arakelleefaegel 191
                 eare a a+++ell+e+++  +
  KKY15527.1 764 EARERAfAQVDELLAEYSQ--W 783
                 ****************999..3 PP

>> DUF996  Protein of unknown function (DUF996)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   6.9         3   1.8e+04      33      82 ..      74     132 ..      64     164 .. 0.50
   2 ?   15.1   1.8   3.6e-06     0.021       3     120 ..     170     286 ..     168     290 .. 0.94
   3 ?   -3.4   0.1       1.8   1.1e+04      29      39 ..     369     379 ..     361     401 .. 0.59
   4 ?    0.6   0.6       0.1   6.2e+02      32      83 ..     445     496 ..     441     499 .. 0.76

  Alignments for each domain:
  == domain 1  score: -4.5 bits;  conditional E-value: 3
      DUF996  33 filsii.alvvailalllvlgalatalelpgleeaas........lilllllvliiayv 82 
                 +i  ii  +++a++a++  ++ +  ++++  l+++          +i+ ++l+l+ + v
  KKY15527.1  74 VISIIIgKFIIAAVAVANGMVGAEWHIGFVVLSRYIWgvygsylaIIQRIILSLVWFSV 132
                 33333333333333333333333333333333333322222244444445555544444 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 3.6e-06
      DUF996   3 ivGliLvlvalkeiskavndekifsnaliafilsiialvvailalllvlgalatalelpgleeaaslilllllvliiayvlliisavflkksyellgkr 101
                 +vG++L+ v ++ +  +v+ eki + +l++ i+s+i l+ +++  +  +g     l+ p++++ +s +++ +++ +++++  i+ ++  +  y++ +++
  KKY15527.1 170 FVGWVLFNVLMIPV-IYVKPEKINKVVLYMNIVSVITLISIMIWAMSEAGGGGPLLSAPAAKMSSSELGWNIVLGVTTTIGSIAVGLTNQPDYSRFARK 267
                 78899888877765.46999******************************************************************************* PP

      DUF996 102 tgvklFetagllyfiGaiL 120
                  g + F +   ++++G+iL
  KKY15527.1 268 PGDQVFGQWFSIIVFGTIL 286
                 *****************99 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.8
      DUF996  29 aliafilsiia 39 
                 a+i +ilsi+ 
  KKY15527.1 369 AFIGLILSIAM 379
                 45555555544 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.1
      DUF996  32 afilsiialvvailalllvlg.alatalelpgleeaaslilllllvliiayvl 83 
                 afi +i++++     ++  ++ ++++ ++ + l++ a + l++++++i+ y+l
  KKY15527.1 445 AFISWIVGFASQLPGFANNITpSIVVPVGCQRLYYLA-YPLGFVISFIVHYIL 496
                 79999*****999999987762556667778777755.677777788888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (834 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.50
# Mc/sec: 5036.09
//
Query:       KKY15528.1  [L=328]
Description: hypothetical protein UCRPC4_g06331 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-22   79.1   0.5      2e-21   76.3   0.0    2.3  3  UPF0029         Uncharacterized protein family UPF0029
  ------ inclusion threshold ------
       0.15   12.7   0.1         12    6.6   0.0    2.6  2  Tn7_Tnp_TnsA_C  TnsA endonuclease C terminal
          5    6.7  12.0        6.9    6.2  12.0    1.2  1  DUF572          Family of unknown function (DUF572)


Domain annotation for each model (and alignments):
>> UPF0029  Uncharacterized protein family UPF0029
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   3.3e-25     2e-21       1     104 [.      32     137 ..      32     138 .. 0.85
   2 ?   -3.4   0.0       2.1   1.2e+04      57      74 ..     161     178 ..     149     184 .. 0.66
   3 ?    0.2   0.1      0.16   9.4e+02      26      74 ..     240     294 ..     231     304 .. 0.60

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 3.3e-25
                 TTEEEEEEEEE-SSHHHHHHHHHHH--..TTSSEEEEEE....EE............TTEE-TTSSTSHHHHHHHHHHTTB-SEEEEEEEE--SS--HH CS
     UPF0029   1 kkSrFiavlaaveseeevkaileelkkenkkathniyAyrlrqkvek........vnedsdddgEpaAGkkllelLekeklenvlvvvtRwfGGikLGp 91 
                 + S+F+a   ++ s++ +++  +      + a+h i+Ayr+ +k+++         ++++dddgE+ AGkk+ +l++ +++  v +vv+Rw+GGi+LGp
  KKY15528.1  32 RSSTFQALYSPTLSPRTLQSQSS-----IRTASHRILAYRTPSKQRSlsasfkplYETGHDDDGEQYAGKKVETLMKDQDVVGV-IVVARWYGGIMLGP 124
                 57888888888888877776665.....456********99999988777777766666********************99987.5789********** PP

                 HHHHHHHHHHHHH CS
     UPF0029  92 grlraiseaarea 104
                  r+++i+++area
  KKY15528.1 125 VRFQHIEDCAREA 137
                 ***********98 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.1
                 SSTSHHHHHHHHHHTTB- CS
     UPF0029  57 EpaAGkkllelLekekle 74 
                 E+++ ++l  +Le+++ +
  KKY15528.1 161 EEKSRQRLIGVLEERDRS 178
                 556677777788776443 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.16
                 --..TTSSEEEEEE....EE....TT.....EE-TTSST.SHHHHHHHHHHTTB- CS
     UPF0029  26 kkenkkathniyAyrlrqkvekvned.....sdddgEpa.AGkkllelLekekle 74 
                 +++ +ka+  ++++ l+++ + ++e+     ++++g     G +  ++ e+++++
  KKY15528.1 240 LQRLEKARDSTISWILKEIDKVEQEQrmdasVENNGSDTaQGYESTNVTETKNIS 294
                 4456679999999977666655554455555333333332555555555555555 PP

>> Tn7_Tnp_TnsA_C  TnsA endonuclease C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.021   1.3e+02      62      80 ..     174     192 ..     140     193 .. 0.86
   2 ?    6.6   0.0     0.002        12      37      64 ..     240     267 ..     225     270 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.021
  Tn7_Tnp_TnsA_C  62 ergtsLplirhLlatkeil 80 
                     er  s+ ++r Lla+k+i+
      KKY15528.1 174 ERDRSIVVLRALLAEKQIE 192
                     55678999********995 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.002
  Tn7_Tnp_TnsA_C  37 lerlrenpdttlrellkelDkeyslerg 64 
                     l+rl++++d+t++ +lke+Dk  + +r 
      KKY15528.1 240 LQRLEKARDSTISWILKEIDKVEQEQRM 267
                     799*****************99988876 PP

>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  12.0    0.0012       6.9     170     304 ..     144     305 ..     126     327 .. 0.42

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0012
      DUF572 170 lrkefreekkereeeeedeealkeki.........sle.kikllpede.edekkakllegkteslfasseesaksakkkptkkesskekkkeslekkls 257
                 +++e ++ kk++   e dee  ++++         s+     ll e++ e  k a+ ++  t+s ++  ++++++++ +pt++ +   + ++ + ++l+
  KKY15528.1 144 EMQEIERAKKRKLVVE-DEEKSRQRLigvleerdrSIVvLRALLAEKQiERTKAADFVQAGTSSSNNFPPTAQAHDSGSPTARPAPPPNYSAMNLQTLQ 241
                 3344444444444445.5555555555666655442222456667777788888888885454344434444344444666555555556666666666 PP

      DUF572 258 kltkkkadsslvvrKkkke...................eekskeskekteeeskeseeeskkeeet 304
                 +l+k++ ++   + K+ ++                   +    es++ te+++ +++++sk+e+++
  KKY15528.1 242 RLEKARDSTISWILKEIDKveqeqrmdasvenngsdtaQ--GYESTNVTETKNISNTSTSKTESSR 305
                 664444443333333333322223333333332222110..1111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1726  (0.0962686); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 1980.16
//
Query:       KKY15529.1  [L=242]
Description: putative methyltransferase domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-15   56.4   0.1    4.7e-15   55.6   0.1    1.3  1  CMAS             Mycolic acid cyclopropane synthetase
    4.7e-07   29.8   0.0    6.6e-07   29.3   0.0    1.1  1  Methyltransf_23  Methyltransferase domain
    5.7e-07   30.1   0.0    1.1e-06   29.2   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    7.6e-07   29.0   0.1    4.6e-06   26.5   0.1    1.9  1  Methyltransf_31  Methyltransferase domain
    2.1e-06   28.4   0.0    9.9e-06   26.2   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
    0.00016   22.3   0.0    0.00065   20.4   0.0    2.0  1  Methyltransf_12  Methyltransferase domain
     0.0027   17.3   0.0      0.014   14.9   0.0    1.9  2  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
        0.1   12.6   0.0       0.26   11.3   0.0    1.7  2  ADH_zinc_N       Zinc-binding dehydrogenase
       0.13   11.7   0.0       0.25   10.8   0.0    1.4  1  DOT1             Histone methylation protein DOT1
       0.13   12.0   0.0       0.22   11.2   0.0    1.4  2  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
       0.15   11.7   0.1       0.22   11.1   0.1    1.2  1  MetW             Methionine biosynthesis protein MetW
       0.16   11.9   0.0       0.31   11.0   0.0    1.4  1  Methyltransf_32  Methyltransferase domain


Domain annotation for each model (and alignments):
>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.1   3.2e-18   4.7e-15       7     111 ..      38     140 ..      32     153 .. 0.92

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 3.2e-18
                 HHHHHHHHTS-HHHHCTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHH CS
        CMAS   7 venikahYDlsndffalfldptmtYsCAyferddmtLeeAqlaKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrv 105
                  e i++hY+ + + ++++ ++ +     yf+  d+t ++Aql+ ++l+le+ +l+ G+ +Ld+GcG G+  r+ ++ +d ++ g+ +S  + + akk  
  KKY15529.1  38 KERIRNHYEKAAQCYQIYWGEHIHH--GYFKAVDDTKDAAQLNLVELLLEQSQLERGSSVLDVGCGLGGCDRHLAKFWDCRITGIAISGREIQIAKKLA 134
                 6789*****************9987..6*******************************************************************9998 PP

                 HTS-SS CS
        CMAS 106 deldle 111
                 +e+ ++
  KKY15529.1 135 AEEAFT 140
                 887665 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   4.4e-10   6.6e-07      11     124 ..      81     222 ..      69     236 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 4.4e-10
  Methyltransf_23  11 dklerllpklraggrvLdiGcGtGillevlreng.fsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqg...................... 81 
                      ++l++ ++ l++g++vLd+GcG G   ++l++++ + +tg+ +s + ++ia+       + + e+  + p+g                      
       KKY15529.1  81 ELLLEQSQ-LERGSSVLDVGCGLGGCDRHLAKFWdCRITGIAISGREIQIAK-------KLAAEEAFTSPKGmlctenfqlgrgevcyleldae 166
                      33333333.899*************99999887527**********999984.......23323333445556666666666777777777777 PP

  Methyltransf_23  82 .............kfdlIvlrevlehvpdppellrqiatllkpgGylllseplasl 124
                                   +f+ I   e++  +pd   l+r++  ll  gG l++ ++ + +
       KKY15529.1 167 klgdyfgfsaeptTFQGIWIVETMSQIPDKDLLFRNAELLLDHGGKLIIADWFKAD 222
                      7778999999999************************************9986543 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   7.4e-10   1.1e-06       1      96 []      96     215 ..      96     215 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 7.4e-10
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-.................EEEETTEECCCTS....S-TT..-EEEEEEES- CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl.................kvefvvadaeklp....fedn..sfDlvvssev 70 
                      LdvGcG G   ++lak   +r++g+ +s + +++ak+ a ee +                 +v +++ daekl     f  +  +f  +++ e+
       KKY15529.1  96 LDVGCGLGGCDRHLAKFWdCRITGIAISGREIQIAKKLAAEEAFtspkgmlctenfqlgrgEVCYLELDAEKLGdyfgFSAEptTFQGIWIVET 189
                      8**************999***********************9999999999988777777777779999998633544555444********** PP

                      CCC-CCHHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11  71 lhhvedpekalkeiaRvLkpgGllvi 96 
                      +  ++d + +++++  +L  gG+l+i
       KKY15529.1 190 MSQIPDKDLLFRNAELLLDHGGKLII 215
                      ***********************996 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1   3.1e-09   4.6e-06       2     122 ..      90     229 ..      89     237 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 3.1e-09
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.........nveFeqgdieeleklled...........ekf 75 
                      ++g +vlD+GCG G     la + + +++++Gi is + i+ A++ a++  ++         n+++ +g++  le + e+            +f
       KKY15529.1  90 ERGSSVLDVGCGLGGCDRHLA-K-FWDCRITGIAISGREIQIAKKLAAEEAFTspkgmlcteNFQLGRGEVCYLELDAEKlgdyfgfsaepTTF 181
                      56889****************.4.558***********************99988555555555555555555443222245455555555555 PP

  Methyltransf_31  76 Dlilsnevlnaladpdkileeiervlkpggilliedprllaelp.akv 122
                        i   e++  ++d+d  ++++e +l  gg l+i+d   +++l  +++
       KKY15529.1 182 QGIWIVETMSQIPDKDLLFRNAELLLDHGGKLIIADWFKADDLTlEQM 229
                      557777999************************999765555555444 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   6.6e-09   9.9e-06       1      97 []      95     211 ..      95     211 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 6.6e-09
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.................TEEEEESBCCGBS....S..STTTEEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.................nvefvqgdaedlp....f..edgsfDlvvss 71 
                      vLd+GcG G   ++lak + ++++tg+ is + +++a++ a+ee +                 +v +++ dae+l     f  e  +f  ++++
       KKY15529.1  95 VLDVGCGLGGCDRHLAKFW-DCRITGIAISGREIQIAKKLAAEEAFtspkgmlctenfqlgrgEVCYLELDAEKLGdyfgFsaEPTTFQGIWIV 187
                      9***************998.7*****************99998443433444666655666667777778888875443323377788888888 PP

                      STGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  72 galhhlsdedlekalkeiarvLkpgG 97 
                       +++ ++d+d   +++++  +L  gG
       KKY15529.1 188 ETMSQIPDKD--LLFRNAELLLDHGG 211
                      7788877655..56888888887777 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.3e-07   0.00065       1      99 []      96     213 ..      96     213 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.3e-07
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.....................ssfDlvvas 73 
                      L++GcG G + r+l++   d+++tg+ is + i + ++kla++e+    +  l +++     g+                      +f  +++ 
       KKY15529.1  96 LDVGCGLGGCDRHLAKF-WDCRITGIAISGREI-QIAKKLAAEEAFTSPKGMLCTENFQLGRGEvcyleldaeklgdyfgfsaepTTFQGIWIV 187
                      8********99999666.***************.88999999887666666666666444444499999999999999999999999999**** PP

  Methyltransf_12  74 nvlhhlkdirevldnirklLkpgGrl 99 
                      ++++ ++d++ +++n+  lL  gG+l
       KKY15529.1 188 ETMSQIPDKDLLFRNAELLLDHGGKL 213
                      *****************999999986 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.7e-06     0.014      21      79 ..      81     138 ..      61     151 .. 0.83
   2 ?   -0.2   0.0      0.43   6.5e+02     121     137 ..     199     215 ..     194     236 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.7e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTT CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleank 79 
                 +lLle+ + e+  +vlD+GcG G    +lak+++  ++t + ++ r +++ak+ +++++
  KKY15529.1  81 ELLLEQSQLERGSSVLDVGCGLGGCDRHLAKFWDC-RITGIAISGREIQIAKKLAAEEA 138
                 46666666668889*****************9877.89999999999999998777665 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.43
                 HHHHHHHHEEEEEEEEE CS
         MTS 121 liaeAkeaLkegGeLli 137
                 l+++A+  L++gG+L+i
  KKY15529.1 199 LFRNAELLLDHGGKLII 215
                 789999999****9986 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00018      0.26       1      41 [.     101     141 ..     101     157 .. 0.88
   2 ?   -2.9   0.0       4.2   6.2e+03      72      87 ..     200     215 ..     197     226 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEET CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadeviny 41 
                 g+G +   lAk + ++++++++s + +++akkl a+e++++
  KKY15529.1 101 GLGGCDRHLAKFWDCRITGIAISGREIQIAKKLAAEEAFTS 141
                 677777889***************************99987 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.2
                 HHHHHHCEEEEEEEEE CS
  ADH_zinc_N  72 leaalkllkpgGrlvv 87 
                 +++a  ll++gG+l +
  KKY15529.1 200 FRNAELLLDHGGKLII 215
                 6777788999999876 PP

>> DOT1  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00017      0.25      29      87 ..      78     135 ..      70     145 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
                 HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE--HHHHHHHHHHHH CS
        DOT1  29 eflsevldkvnlkkedvFvDLGSGvGnvvlqaalevgcklsvGvEimdnaselaekqke 87 
                 ++++ +l++ +l++ +  +D G G+G +    a    c+  +G+ i+    ++a+k + 
  KKY15529.1  78 NLVELLLEQSQLERGSSVLDVGCGLGGCDRHLAKFWDCR-ITGIAISGREIQIAKKLAA 135
                 6788899********************************.89****9999999988765 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00015      0.22      56      86 ..      74     104 ..      35     136 .. 0.80
   2 ?   -3.4   0.0       4.4   6.6e+03     163     171 ..     207     215 ..     179     216 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                 E--HHHHHHHHHHTT--TT-EEEEES-TTSH CS
        PCMT  56 iSaphmvalalellelkkgarvLevGsGsGy 86 
                   +  +v l+le  +l++g++vL+vG+G G 
  KKY15529.1  74 AAQLNLVELLLEQSQLERGSSVLDVGCGLGG 104
                 556677888888889*************985 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.4
                 EEEEEEEEE CS
        PCMT 163 LkeGGrlvv 171
                 L++GG+l++
  KKY15529.1 207 LDHGGKLII 215
                 788999887 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00015      0.22      10      50 ..      88     128 ..      80     136 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00015
        MetW  10 likpgsrvldlGcGdGellellkeekqvdgrGleldeegva 50 
                  ++ gs vld+GcG G   + l++  + +  G+ ++ + ++
  KKY15529.1  88 QLERGSSVLDVGCGLGGCDRHLAKFWDCRITGIAISGREIQ 128
                 57889************999999999999999988877665 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00021      0.31      11      73 ..      78     136 ..      72     151 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
  Methyltransf_32  11 elvakllkelakesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraek 73 
                      +lv+ ll++ ++ ++  +v+DvG+G g   + la       ++++gi ++ + ++ a+k+a++
       KKY15529.1  78 NLVELLLEQ-SQLERGSSVLDVGCGLGGCDRHLAK---FWDCRITGIAISGREIQIAKKLAAE 136
                      788899999.57777899****************9...899********99999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1754.29
//
Query:       KKY15530.1  [L=257]
Description: putative glutathione transferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-13   49.9   0.0      1e-12   48.2   0.0    1.9  2  GST_N     Glutathione S-transferase, N-terminal domain
    8.8e-13   48.5   0.0    1.7e-12   47.6   0.0    1.4  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    1.4e-10   41.3   0.0    3.3e-10   40.1   0.0    1.6  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    6.7e-08   32.6   0.0    1.2e-07   31.8   0.0    1.4  1  GST_C_3   Glutathione S-transferase, C-terminal domain
    1.2e-06   28.6   0.0    2.3e-06   27.7   0.0    1.5  1  GST_C     Glutathione S-transferase, C-terminal domain
     0.0069   16.4   0.0      0.022   14.8   0.0    1.8  1  GST_C_2   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   3.4e-16     1e-12       2      75 ..       5      79 ..       4      80 .. 0.93
   2 ?   -2.1   0.0       1.7   5.2e+03      43      58 ..     100     115 ..      89     119 .. 0.75

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 3.4e-16
                EEEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET...TEEEESHHHHHHHHH CS
       GST_N  2 vltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedn...gkkltESraIleYia 75
                +l+l s+++ p+++++ + l+++g++ye +  +f +   k  e+ ++np+g+ P+L+d+   +++++ES+aI++Y++
  KKY15530.1  5 SLILHSHITGPNPWKVAIILEELGLPYESKYWEFADL--KTLEYESMNPNGRTPTLVDPnngNFTIWESGAIVQYLV 79
                5789999999***********************9555..45******************9*9*************96 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.7
                 HHHHHHCTTS-SSEEE CS
       GST_N  43 pellklnplgkvPaLe 58 
                  ++l+ +  g+ P++ 
  KKY15530.1 100 NQWLQFQMSGQGPYFG 115
                 6899999999999985 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   5.7e-16   1.7e-12       6      73 ..      13      84 ..       8      91 .. 0.85

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 5.7e-16
                TSHHHHHHHHHHHHHT--EEEE---.TTTTHHHHHHH-TT--SSEEETT...S-EEESHHHHHHHHHHHH-G CS
     GST_N_3  6 aSpyarrvrlaLnekglpvevvevt.pgehdeellaknplgkvPvLedd...gealtdSlaIidyLeelypg 73
                + p+ ++v+++L+e+glp+e    +  + +  e+  +np+g+ P+L+d+   +  +++S aI++yL ++y+ 
  KKY15530.1 13 TGPNPWKVAIILEELGLPYESKYWEfADLKTLEYESMNPNGRTPTLVDPnngNFTIWESGAIVQYLVDRYDT 84
                56999***************86655255579****************8755444****************95 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   1.1e-13   3.3e-10       3      67 ..      15      78 ..      13      81 .. 0.89

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 1.1e-13
                HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-C.TTE.EEESHHHHHHHH CS
     GST_N_2  3 PwahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdk.dgq.vineSseIlryl 67
                P +++v i l+++gl+++ + +  e+ + ++  e+   np+g  P+L+d+ +g+  i+eS +I++yl
  KKY15530.1 15 PNPWKVAIILEELGLPYESKYW--EFADLKT-LEYESMNPNGRTPTLVDPnNGNfTIWESGAIVQYL 78
                889***************8888..6677776.6****************976668***********9 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   4.2e-11   1.2e-07      21      98 ..     167     248 ..     148     249 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 4.2e-11
                 HHHHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH......TCCCC-HHHHHHHHHHHTSHHHHHHHCT CS
     GST_C_3  21 kkefleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleea......ealkkfpklkalyervearpkikaYles 98 
                 +k+ + ++++++ ++++ +lk  g++yl+gdk++yADl+++++  ++ ++      e++ k  +  +++  + +rp++k+ le+
  KKY15530.1 167 AKSRYINEINRVNTVLNSALK--GKKYLLGDKISYADLSFVTWHVMIPFIlgeeklETDGKNTEYERWMSGLLERPAVKKVLEE 248
                 445555778888888888888..999*****************99999999876543336778899**************9986 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   7.6e-10   2.3e-06      10      93 .]     155     240 ..     146     240 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 7.6e-10
                 HHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTT...TTTSHHHHHHHHHHHTSH CS
       GST_C  10 llfyvkaeekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafg...qekfpnlkawlerimarp 93 
                 +++ +++e    +++    +++++v  +l+  lk+++yl Gdk+++AD+ +v++  + + + ++ +     k  +  +w++ + +rp
  KKY15530.1 155 WFSRFHPE-SLPSAKSRYINEINRVNTVLNSALKGKKYLLGDKISYADLSFVTWHVMIPFILGEEKletDGKNTEYERWMSGLLERP 240
                 55555553.333355666678999999***************************997766665555576677777788888887776 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   7.2e-06     0.022      16      43 ..     180     207 ..     166     221 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.2e-06
                 HHCTTT---SS.CTTCS--HHHHHHHHH CS
     GST_C_2  16 daleahLadspflfGdqptlaDialapf 43 
                  +l++ L+++ +l+Gd++++aD ++ ++
  KKY15530.1 180 TVLNSALKGKKYLLGDKISYADLSFVTW 207
                 689*******************988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1716.11
//
Query:       KKY15531.1  [L=1721]
Description: putative ribosome biogenesis protein bms1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.7e-105  352.7   0.0     5e-105  351.8   0.0    1.4  1  Alpha-amylase  Alpha amylase, catalytic domain
    1.6e-94  316.7   0.0    1.6e-94  316.7   0.0    1.8  1  RIBIOP_C       40S ribosome biogenesis protein Tsr1 and BMS1 
    1.1e-14   54.2   0.0    3.9e-14   52.5   0.0    2.0  1  AARP2CN        AARP2CN (NUC121) domain
    3.3e-05   24.2   0.0    0.00011   22.5   0.0    1.9  1  AAA_22         AAA domain
    0.00012   22.5   0.0    0.00038   20.9   0.0    1.8  1  AAA_16         AAA ATPase domain
     0.0011   19.1   0.0     0.0011   19.1   0.0    1.9  1  AAA_33         AAA domain
     0.0013   18.8   0.0     0.0035   17.4   0.0    1.8  1  MMR_HSR1       50S ribosome-binding GTPase
     0.0018   18.7   0.0     0.0048   17.3   0.0    1.7  1  AAA            ATPase family associated with various cellular
     0.0046   17.5   1.5     0.0095   16.5   0.0    2.2  1  ABC_tran       ABC transporter
      0.006   15.7   0.0      0.006   15.7   0.0    1.6  1  hDGE_amylase   Glycogen debranching enzyme, glucanotransferas
     0.0062   16.9   0.0      0.014   15.7   0.0    1.5  1  AAA_19         AAA domain
     0.0077   16.2   0.0      0.015   15.2   0.0    1.5  1  NACHT          NACHT domain
     0.0095   15.1   0.0      0.023   13.9   0.0    1.5  1  NB-ARC         NB-ARC domain
  ------ inclusion threshold ------
      0.013   16.0   0.2      0.081   13.5   0.2    2.5  1  AAA_18         AAA domain
      0.014   15.8   0.1      0.059   13.8   0.0    2.1  2  RNA_helicase   RNA helicase
      0.027   14.2   0.2      0.087   12.5   0.0    1.8  2  AAA_30         AAA domain
      0.037   13.6   0.1      0.066   12.8   0.1    1.3  1  cobW           CobW/HypB/UreG, nucleotide-binding domain
      0.043   13.3   0.0        0.1   12.1   0.0    1.5  1  AAA_7          P-loop containing dynein motor region
      0.054   13.4   0.2       0.11   12.4   0.2    1.5  1  NTPase_1       NTPase
      0.057   13.3   0.0       0.15   11.9   0.0    1.6  1  ATPase_2       ATPase domain predominantly from Archaea
      0.076   12.2   0.0       0.13   11.4   0.0    1.3  1  KAP_NTPase     KAP family P-loop domain
      0.085   12.8   0.0       0.18   11.7   0.0    1.4  1  RsgA_GTPase    RsgA GTPase
      0.098   12.7   0.0       0.21   11.6   0.0    1.4  1  TsaE           Threonylcarbamoyl adenosine biosynthesis prote
      0.099   12.2   0.0        6.1    6.3   0.0    2.4  2  GTP_EFTU       Elongation factor Tu GTP binding domain
       0.13   12.2   0.1       0.33   11.0   0.1    1.7  1  AAA_5          AAA domain (dynein-related subfamily)
       0.13   12.3   0.0       0.36   10.9   0.0    1.7  1  AAA_14         AAA domain
       0.15   11.7   0.0       0.37   10.4   0.0    1.6  1  SRP54          SRP54-type protein, GTPase domain
       0.43   11.6   5.0        1.5    9.9   5.0    1.9  1  FKBP_N         Domain amino terminal to FKBP-type peptidyl-pr
       0.68   10.4   9.3       0.54   10.7   0.1    2.8  2  AAA_17         AAA domain
          1    8.7   9.0        2.9    7.2   9.0    1.7  1  Rtf2           Rtf2 RING-finger


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.8   0.0  8.3e-108    5e-105       1     334 [.      31     397 ..      31     400 .. 0.94

  Alignments for each domain:
  == domain 1  score: 351.8 bits;  conditional E-value: 8.3e-108
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHSTTSGGG CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifkspqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkkkgepkr 96 
                    GD++Gii+ LdYl++LGv+ iw+sPif+spq d+gYdi+dy+++dp++Gt+ed+++Li+++hekg+++ilDlV+NHtsd+h+wf es k+k++ k+
     KKY15531.1  31 GDFQGIISTLDYLQDLGVDIIWISPIFASPQIDMGYDISDYEAVDPRYGTMEDMDKLIQAVHEKGMRLILDLVINHTSDQHAWFVESKKSKNNLKS 126
                    9*********************************************************************************************** PP

                    CCC-E..........ESS-STTC-TTTTCSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCC.CCCCCCTTT-SEEEETTCCCTTTCCCC... CS
  Alpha-amylase  97 dyyiwkegk....eekeppnnwkslfdgsaweydekaqeyylhlflkklpdLnteneevrkelkd.vvkfwlekgidGfRlDvvkhvskveal... 184
                    d+yiw+++k    ++++ppnnw  +f+g+awey   +++yylhlf+k++pd+n+e+ e rk++ + +++fwl+kgidGfR+D+ +++sk++++   
     KKY15531.1 127 DWYIWRDPKydslGHRQPPNNWGCFFGGTAWEYVPSRDQYYLHLFAKEQPDINWESGEARKAIREsAIEFWLKKGIDGFRVDTGNLYSKDQDFpda 222
                    *************99**************************************************************************8888*** PP

                    ...............HCCHCCHHHHHHHHHHHTC.CGTT-EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTS.TTSB-SS-HHHHH CS
  Alpha-amylase 185 ...............esngeflheftqalnetva.srkevmtvgEvssdasedlrvyttearlelemvldfphldvaqkaki.keqlksisakklk 263
                                     ng+++he+  ++ + ++ ++ +vm+vgE+ s+  +++ +y++++ +e++m++df  ++++   +  k++l++ ++ ++k
     KKY15531.1 223 evtelsspyqdprpfVVNGPRIHEYIREMRHLAFdKYGDVMLVGECGSTPASEAVRYVSASSHEYSMIIDFDLVSLGGTLSPdKHDLQPHTLSEFK 318
                    *******************************999999**************************************998877669999999999999 PP

                    HHHHHHHH...HS-C...CCTTCEEES--TTS--HHHHTTSSTTTT..HHHHHHHHHCCCTSSSEEEEETTCCCT---- CS
  Alpha-amylase 264 ellkkwlk...alee...aaeeavtflgnHDqeRilsrlgddsaea..ekklklaaillltlrGvpviYyGeEigmtgg 334
                     +l+k ++   +++     + + ++fl+nHD +R+++r+   s  +   + +kl+a+l+ tl+G+ +iY+G+Eigmt++
     KKY15531.1 319 CALSKPQTlniSIPAfaeRDAWPTVFLENHDCSRSINRFTPGSLPEyrAPAAKLLATLVTTLTGTLFIYQGQEIGMTNV 397
                    888876653332333333899******************8776333489****************************97 PP

>> RIBIOP_C  40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.7   0.0   2.6e-97   1.6e-94       8     292 .]    1221    1525 ..    1214    1525 .. 0.91

  Alignments for each domain:
  == domain 1  score: 316.7 bits;  conditional E-value: 2.6e-97
    RIBIOP_C    8 earerfakyrglkslrtsewdpken.........lpeeyarifefenfketkkrvlkeale...............eregvegGtyvrleiknvpee 80  
                  e++ +++++++lk  +++e   +e           + e ++ f ++++++++k++l+++ +               +  g+ +Gty r++++nvp e
  KKY15531.1 1221 EREANARRKEELKLRFEEED--REGfgkrpelkdGNAEAEQEFGEDDWYDAQKAALQKQADinnmelstldpaaraRASGFRAGTYARIVLENVPYE 1315
                  55666677777777776666..22223444444577889999***************66666789999999997776677777************** PP

    RIBIOP_C   81 lveeknfdekkplivfgllphEekvsvvnvrikrhreyekpikskdplifsvGfRrfqakPifsqedtknnkhklerylkpght.cvatfygpitfp 176 
                  + +   f++ +p+i++gl p+Ee++++v+vrikrhr+++k++k++dplifs+G+Rrfq+ Pi+s +d +++++++++y+ p+h+ c+ tf+gp+++p
  KKY15531.1 1316 FSR--LFSPMYPVIIGGLAPTEERFGYVQVRIKRHRWHKKILKTNDPLIFSLGWRRFQSLPIYSISD-SRTRNRMLKYT-PEHMhCFGTFWGPLVAP 1408
                  ***..89************************************************************.6**********.99999************ PP

    RIBIOP_C  177 ntpvlafkelsskeasfrlvatGsvlevdpsriivkrivLtGhpfkihkktaviryMFfnpedvawFkpveLrTksGrrGhIkeslgt.hGyfkatF 272 
                  nt+++a+++ ++++++fr++atG+vl+vd++++ivk+++LtG+p+ki+++ta+i++MF +++++a+F+++++rT+sG+rG+Ik++l + +G+f+atF
  KKY15531.1 1409 NTGFCAVQSFNNSNPGFRIAATGTVLNVDSNTEIVKKLKLTGYPYKIFRNTAFIKDMFSTSLEIAKFEGASIRTVSGIRGQIKRALAKpEGHFRATF 1505
                  **************************************************************************************999******** PP

    RIBIOP_C  273 ddklkqsDiVlmslYkrvfp 292 
                  +dk+ +sDiV+++++++v+p
  KKY15531.1 1506 EDKILMSDIVFLRAWYPVKP 1525
                  ******************98 PP

>> AARP2CN  AARP2CN (NUC121) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   6.5e-17   3.9e-14      28      86 .]     767     826 ..     762     826 .. 0.96

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 6.5e-17
     AARP2CN  28 adrveiltdseskeeeskedrtlsveGyvrGspl.sanqlvHipglGDfqiekieklpdP 86 
                 adr+ ++t+++ +ee++k+drt++++Gy+rG+++  ++ +vH+pg+GD  ++++e+lpdP
  KKY15531.1 767 ADRFLDITPPTAIEENPKCDRTVALYGYLRGTNFpAVDARVHVPGVGDLRVSHVEALPDP 826
                 89999*****************************8889*********************9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.8e-07   0.00011       7      60 ..     676     739 ..     672     759 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.8e-07
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee.........erpevvfvtlpsst.sskdllrel 60 
                 +++v+G++G+GKTtl++ l ++++++              +r+++ f ++ps + s     +++
  KKY15531.1 676 VVAVVGPPGVGKTTLIKSLIRRYTKQTLSSPkgpltvvtsKRRRLTFLECPSHSlSAMIDISKI 739
                 679********************98877777999999998888888*****9986554445555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   6.3e-07   0.00038      15      52 ..     664     708 ..     656     740 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 6.3e-07
      AAA_16  15 alervrsgrp.elvllsGesGvGKsslvrellralekd......g 52 
                 +++r+ +  p  +v ++G++GvGK++l+++l r+++k+      g
  KKY15531.1 664 LVDRLPEEAPpLVVAVVGPPGVGKTTLIKSLIRRYTKQtlsspkG 708
                 56677777777999*********************9995544442 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.9e-06    0.0011       1      32 [.     676     707 ..     676     759 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.9e-06
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdt 32 
                 +v +vG+pG+GK+tl+++l+++ + ++lss++
  KKY15531.1 676 VVAVVGPPGVGKTTLIKSLIRRYTKQTLSSPK 707
                 799*********************99999997 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   5.9e-06    0.0035       2      29 ..     677     705 ..     676     772 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.9e-06
                 EEEEESTTSSHHHHHHHHHTS.TEEESSS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdk 29 
                 va+vG p vGK+tLi++l+++ + ++ + 
  KKY15531.1 677 VAVVGPPGVGKTTLIKSLIRRyTKQTLSS 705
                 89*****************9853333222 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     8e-06    0.0048       2      26 ..     678     703 ..     677     749 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 8e-06
                 EEESSTTSSHHHHHHHHHHHH.THEE CS
         AAA   2 llyGppGtGKTllakavakel.gvef 26 
                  ++GppG+GKT+l+k++++   ++++
  KKY15531.1 678 AVVGPPGVGKTTLIKSLIRRYtKQTL 703
                 689***************99622332 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.6e-05    0.0095      13      38 ..     676     701 ..     673     713 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.6e-05
                 EEEEEESTTSSHHHHHHHHTTSS--S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkpt 38 
                 +va+vG+ G GK+tL+k l++ ++++
  KKY15531.1 676 VVAVVGPPGVGKTTLIKSLIRRYTKQ 701
                 699******************99875 PP

>> hDGE_amylase  Glycogen debranching enzyme, glucanotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     1e-05     0.006      18     113 ..      30     117 ..      27     129 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1e-05
                   S-SHHHHHHHHHHHHHTT--EEEES--EEE-TT--TTSEEEEEEE-TTT-.....SSC.HHHHHHHHHHHHHH--EEEEEE--SEEETT-CCCCC- CS
  hDGE_amylase  18 lGpleeWekvlkeikekgYnmiHftPlqelGesnSpYSiadqleldkelfeekdkeekeedveklvkklekeygllsltDvVlnHtannskwleeh 113
                   lG ++   ++l+  ++ g ++i  +P+ +  + +  Y i+d   +d++         ++ed++kl++ ++++ g+  + D+V nHt+++ +w  e 
    KKY15531.1  30 LGDFQGIISTLDYLQDLGVDIIWISPIFASPQIDMGYDISDYEAVDPRYG-------TMEDMDKLIQAVHEK-GMRLILDLVINHTSDQHAWFVES 117
                   5677777788999999*******************************994.......678999***999865.8999***************9876 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.4e-05     0.014      10      49 ..     674     714 ..     668     748 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.4e-05
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggvkpee.illva 49 
                   v++v+++pG GKT+++k  ++ + +++  +p+  +++v+
  KKY15531.1 674 PLVVAVVGPPGVGKTTLIKSLIRRYTKQTLSSPKGpLTVVT 714
                 55899******************998887666654044444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.6e-05     0.015       2      40 ..     676     714 ..     675     749 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.6e-05
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEE CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpqgafklvFfl 40 
                 +v++ G++G+GKTtL+++l++   +++l + + +l  + 
  KKY15531.1 676 VVAVVGPPGVGKTTLIKSLIRRYTKQTLSSPKGPLTVVT 714
                 799******************999999988665555554 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   3.9e-05     0.023      10      43 ..     666     697 ..     660     715 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.9e-05
                 HHHHCTTTSCSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  10 ekLlekdelqslvvalvGmgGvGKttlakqilnk 43 
                 ++L e+  +  lvva+vG +GvGKttl+k+ ++ 
  KKY15531.1 666 DRLPEEAPP--LVVAVVGPPGVGKTTLIKSLIRR 697
                 566633333..6****************998876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   0.00014     0.081       1      21 [.     677     697 ..     677     716 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00014
      AAA_18   1 IlltGtpGvGKttlakeLskr 21 
                 +++ G+pGvGKttl k L +r
  KKY15531.1 677 VAVVGPPGVGKTTLIKSLIRR 697
                 689*************99665 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   9.9e-05     0.059       2      31 ..     678     707 ..     677     740 .. 0.81
   2 ?   -2.2   0.1         9   5.4e+03      66      96 ..    1647    1677 ..    1612    1681 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.9e-05
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkk 31 
                    ++Gp+g+GK+tl+k+L+++ +k+  +  k
    KKY15531.1 678 AVVGPPGVGKTTLIKSLIRRYTKQTLSSPK 707
                   689*****************9988744444 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 9
  RNA_helicase   66 npsdlaelirlvsstpyplnmasleekgtlf 96  
                    +  dl+++++++ + ++    a+ eek+  +
    KKY15531.1 1647 KARDLMQKLQTMRNEKVAKRAAKKEEKRAEY 1677
                    3448999999999999999999999997665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       5.7   3.4e+03     102     121 ..      81     100 ..      80     100 .. 0.91
   2 ?   12.5   0.0   0.00015     0.087      19      45 ..     675     701 ..     671     718 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.7
      AAA_30 102 tkqlaallkaaekagakvil 121
                 ++++++l++a++++g+++il
  KKY15531.1  81 MEDMDKLIQAVHEKGMRLIL 100
                 579**************997 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00015
      AAA_30  19 rvavltGpAGtGKttalkalreaweaa 45 
                 +v++++Gp+G GKtt++k+l + ++++
  KKY15531.1 675 LVVAVVGPPGVGKTTLIKSLIRRYTKQ 701
                 5889***************98777765 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   0.00011     0.066       2      26 ..     676     700 ..     675     704 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
                 EEEEEESTTCCHHHHHHHHHCT--S CS
        cobW   2 vtvltGflGsGKTtLlnhllenrag 26 
                 v+ ++G++G GKTtL+++l+++  +
  KKY15531.1 676 VVAVVGPPGVGKTTLIKSLIRRYTK 700
                 7899****************76554 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00017       0.1      36      75 ..     677     716 ..     668     726 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00017
       AAA_7  36 vllvGptGtGKtviikdllkkldkekylsltinfsaqtsa 75 
                 v +vGp G+GKt++ik+l++++ k++++s +  ++  ts 
  KKY15531.1 677 VAVVGPPGVGKTTLIKSLIRRYTKQTLSSPKGPLTVVTSK 716
                 679********************99988777666666665 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   0.00018      0.11       2      26 ..     677     701 ..     676     722 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00018
                 EEEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkss 26 
                 v++ GppGvGKtTl+k +++   ++
  KKY15531.1 677 VAVVGPPGVGKTTLIKSLIRRYTKQ 701
                 7899************999877655 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00026      0.15      14      44 ..     668     698 ..     663     704 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00026
    ATPase_2  14 ilerepneiyfiYGpegsGKtaLlkeiienl 44 
                 + e+ p  ++ + Gp g+GKt+L+k +i + 
  KKY15531.1 668 LPEEAPPLVVAVVGPPGVGKTTLIKSLIRRY 698
                 557889999******************9986 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00022      0.13      14      48 ..     670     702 ..     659     857 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00022
  KAP_NTPase  14 eptlatpivvgLygkWGsGKssllnkledelkefa 48 
                 e   a+p+vv++ g+ G+GK++l+++l++ + ++ 
  KKY15531.1 670 EE--APPLVVAVVGPPGVGKTTLIKSLIRRYTKQT 702
                 33..89*********************99998875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00029      0.18      97     126 ..     672     701 ..     655     709 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00029
                  CTTSEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  97 lkdktsvlvGqSGvGKStLinallpelelk 126
                      ++++vG+ GvGK+tLi++l+ + + +
   KKY15531.1 672 APPLVVAVVGPPGVGKTTLIKSLIRRYTKQ 701
                  55568899***************9876555 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00036      0.21      19      51 ..     674     706 ..     654     711 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00036
                 TEEEEEEESTTSSHHHHHHHHHHHTT------T CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgveevkSP 51 
                   v++  G+ G+GKTtl+++l++ +  ++ +SP
  KKY15531.1 674 PLVVAVVGPPGVGKTTLIKSLIRRYTKQTLSSP 706
                 4579999*****************988899999 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.087        52       6      27 ..     677     698 ..     674     713 .. 0.85
   2 ?    6.3   0.0      0.01       6.1      66     119 ..     714     765 ..     696     769 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.087
                 EEEEESTTSSHHHHHHHHHHHT CS
    GTP_EFTU   6 igiighvDhGKtTLtdrLlykt 27 
                 ++++g    GKtTL+ +L+ + 
  KKY15531.1 677 VAVVGPPGVGKTTLIKSLIRRY 698
                 7899**************9754 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.01
                 TCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHH CS
    GTP_EFTU  66 etkkylinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqteevlrlal 119
                 ++k+++++++ +P H    + +i   +++D+++l++d + G e+ t e l+ ++
  KKY15531.1 714 TSKRRRLTFLECPSHS--LSAMIDISKIADIVLLMIDGNYGFEMETMEFLNALS 765
                 4788889999999998..799**************************9998765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00055      0.33       4      26 ..     679     701 ..     676     708 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00055
                 EE--SSSSHHHHHHHGGGGBS-- CS
       AAA_5   4 LvGppGtgKselaerlaaalnre 26 
                 +vGppG+gK++l+++l ++++++
  KKY15531.1 679 VVGPPGVGKTTLIKSLIRRYTKQ 701
                 79**************9998554 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0006      0.36       4      27 ..     676     699 ..     674     732 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0006
      AAA_14   4 ilvitGaRrvGKTtllkqlikell 27 
                 +++++G+  vGKTtl+k li+++ 
  KKY15531.1 676 VVAVVGPPGVGKTTLIKSLIRRYT 699
                 789*****************9987 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00063      0.37       2      29 ..     675     702 ..     674     707 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00063
                 EEEEEEESTTSSHHHHHHHHHHHHHHTT CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkkeg 29 
                  v+++vG+ G+GKTt +  L ++++k+ 
  KKY15531.1 675 LVVAVVGPPGVGKTTLIKSLIRRYTKQT 702
                 6899******************999985 PP

>> FKBP_N  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   5.0    0.0025       1.5      16      85 ..    1614    1686 ..    1604    1690 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0025
      FKBP_N   16 lkaqgkeldkdavlaGlkdalkgksk.l.tde.eiqevlqalqeklqekqeeeaeknkaegeaFlaenkkkeG 85  
                  +k+q ++++    ++G ++ l++ +  +  +e ++++++q+lq+ ++ek +++a+k++++ +++ ++ +++eG
  KKY15531.1 1614 FKSQITTMKPHSKIKGNQTYLQKRAVvVrGEEkKARDLMQKLQTMRNEKVAKRAAKKEEKRAEYRKKVAENEG 1686
                  5667778888889999999999988854435559***********************************9998 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1    0.0009      0.54       1      25 [.     680     704 ..     680     708 .. 0.88
   2 ?    0.7   4.9       1.1   6.5e+02      31      69 ..    1637    1675 ..    1636    1703 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0009
                 EE-TTSSHHHHHHHHHHHHTEEEEE CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthls 25 
                 +G+PG+GK+t+++ l ++y  + ls
  KKY15531.1 680 VGPPGVGKTTLIKSLIRRYTKQTLS 704
                 7****************99766665 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 1.1
                  HHHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHH CS
      AAA_17   31 reeakrgglakardemrklpleekkelqkeaaekiaeea 69  
                  r+++ rg+ +kard m+kl+  +++++ k+aa+k +++a
  KKY15531.1 1637 RAVVVRGEEKKARDLMQKLQTMRNEKVAKRAAKKEEKRA 1675
                  7889999999*********************99877776 PP

>> Rtf2  Rtf2 RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   9.0    0.0049       2.9     155     223 ..    1628    1696 ..    1615    1718 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0049
        Rtf2  155 vCgkeykeedviplnptkeelellkarleeekakkkkkkkakkkkkakakgskaeaeaaskssseases 223 
                  + +++y ++ ++++ +++  +  l+++l+  + +k +k++akk++k ++  +k  +++ +++++e+ e 
  KKY15531.1 1628 KGNQTYLQKRAVVVRGEEKKARDLMQKLQTMRNEKVAKRAAKKEEKRAEYRKKVAENEGKREEREKRER 1696
                  66899***********************99999999999999998888888887777777766666432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1721 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1640  (0.0914719); expected 358.6 (0.02)
Passed bias filter:                      792  (0.0441742); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        45  (0.0025099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 1.38u 0.36s 00:00:01.73 Elapsed: 00:00:00.51
# Mc/sec: 10251.43
//
Query:       KKY15532.1  [L=498]
Description: hypothetical protein UCRPC4_g06335 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.057   13.7   0.0       0.16   12.3   0.0    1.7  1  KORA      TrfB plasmid transcriptional repressor


Domain annotation for each model (and alignments):
>> KORA  TrfB plasmid transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.9e-06      0.16      45      81 ..     329     365 ..     322     366 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.9e-06
        KORA  45 kqavsqavkrvwaahaereepaglerVsvllpeeeai 81 
                 +++  qa ++v++   +++ ++g++r s+++p e+a 
  KKY15532.1 329 RKNLRQAYDQVLQQRGKLLDAKGFKRLSATIPSERAL 365
                 8999******************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3168.01
//
Query:       KKY15533.1  [L=153]
Description: putative mitochondria fission 1 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-27   92.9   0.6    1.3e-26   92.4   0.6    1.3  1  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
    1.8e-18   65.9   0.0    2.9e-18   65.2   0.0    1.4  1  Fis1_TPR_N  Fis1 N-terminal tetratricopeptide repeat
    0.00044   20.2   1.7    0.00044   20.2   1.7    1.8  2  TPR_2       Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.032   14.9   1.1      0.043   14.5   0.1    1.7  2  TPR_16      Tetratricopeptide repeat
      0.047   13.8   0.0       0.11   12.5   0.0    1.7  1  DUF357      Protein of unknown function (DUF357)
      0.056   13.3   2.2      0.056   13.3   2.2    1.6  2  TPR_1       Tetratricopeptide repeat
      0.086   13.5   0.5       0.19   12.4   0.1    1.9  2  TPR_6       Tetratricopeptide repeat
       0.16   10.7   0.0       0.25   10.1   0.0    1.3  1  DUF2957     Protein of unknown function (DUF2957)


Domain annotation for each model (and alignments):
>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.6   5.9e-30   1.3e-26       1      53 []      74     126 ..      74     126 .. 0.99

  Alignments for each domain:
  == domain 1  score: 92.4 bits;  conditional E-value: 5.9e-30
                 HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHTTT CS
  Fis1_TPR_C   1 reclYylAlGhyklgeYseArryvdalLeiEPenrQaqsLkeliedkikkegl 53 
                 reclYylAlG++klg+Y eArry++ lLeiEP+n+Qa+sL++li+dk++kegl
  KKY15533.1  74 RECLYYLALGNFKLGNYAEARRYNELLLEIEPGNMQAASLRSLIDDKVAKEGL 126
                 9***************************************************8 PP

>> Fis1_TPR_N  Fis1 N-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   1.3e-21   2.9e-18       1      32 [.      37      68 ..      37      69 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 1.3e-21
  Fis1_TPR_N  1 qtkFnYAWgLvkSknredqqeGiaLLeelyrd 32
                qtkFnYAWgL+kS++r++qqeG++LL++++r+
  KKY15533.1 37 QTKFNYAWGLIKSNVRAEQQEGVRLLTDIFRS 68
                9*****************************97 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       4.9   1.1e+04      11      17 ..      27      33 ..      26      35 .. 0.83
   2 !   20.2   1.7     2e-07   0.00044       2      34 .]      75     107 ..      74     107 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.9
       TPR_2 11 yyklgdy 17
                y+k gdy
  KKY15533.1 27 YEKEGDY 33
                8899998 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 2e-07
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 e+ly+l+l  +klg+y+eA+++ e  le++P+n
  KKY15533.1  75 ECLYYLALGNFKLGNYAEARRYNELLLEIEPGN 107
                 789**********************99999987 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       2.8   6.2e+03      50      60 ..      15      25 ..       7      32 .. 0.54
   2 ?   14.5   0.1   1.9e-05     0.043      16      66 ..      58     106 ..      56     107 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.8
      TPR_16 50 laeAaalyraa 60
                l++A+ ++++a
  KKY15533.1 15 LKPAELQVLRA 25
                45555444443 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.9e-05
      TPR_16  16 AaaaleaalkrdpssPd.aaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                  +++l+   +++   P+ ++e l++l++  +++g++aeA+ + + +l+  p+
  KKY15533.1  58 GVRLLTDIFRSA---PErRRECLYYLALGNFKLGNYAEARRYNELLLEIEPG 106
                 678888888999...555***********************99999987766 PP

>> DUF357  Protein of unknown function (DUF357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     5e-05      0.11      43      70 ..      26      53 ..       3      55 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5e-05
                HHHHTT-HHHHHHHHHHHHHHHHHHHHT CS
      DUF357 43 yflekgdlvnAlasfsYaeGwLDagarl 70
                ++ ++gd+v     f+Ya+G++ + +r+
  KKY15533.1 26 QYEKEGDYVGVQTKFNYAWGLIKSNVRA 53
                6899******************999887 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2         4   8.9e+03      11      17 ..      27      33 ..      26      33 .. 0.84
   2 ?   13.3   2.2   2.5e-05     0.056       3      34 .]      76     107 ..      75     107 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4
                HHHTT-H CS
       TPR_1 11 yfklgky 17
                y k g+y
  KKY15533.1 27 YEKEGDY 33
                8899998 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.5e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                 +ly l++  fklg+y eA  y e  Le++P n
  KKY15533.1  76 CLYYLALGNFKLGNYAEARRYNELLLEIEPGN 107
                 79**************************9986 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         8   1.8e+04       9      11 ..      25      27 ..      20      33 .. 0.50
   2 ?   12.4   0.1   8.7e-05      0.19       1      28 [.      75     102 ..      75     107 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 8
                HHH CS
       TPR_6  9 syr 11
                +++
  KKY15533.1 25 AQY 27
                333 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 8.7e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerlik 28 
                 ++ly+lal  +klg++++A+++ e l++
  KKY15533.1  75 ECLYYLALGNFKLGNYAEARRYNELLLE 102
                 68******************98666555 PP

>> DUF2957  Protein of unknown function (DUF2957)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00011      0.25     247     291 ..       5      49 ..       1      58 [. 0.83

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00011
     DUF2957 247 lalvaDdeigisilapataiaagslkGeyiGvdssfnYrstalqg 291
                 l+  aD+e+ +     ++  a+   +G+y+Gv+++fnY   +++ 
  KKY15533.1   5 LPYAADAESPLKPAELQVLRAQYEKEGDYVGVQTKFNYAWGLIKS 49 
                 5677888888888777888899999*************9888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1018.60
//
Query:       KKY15534.1  [L=926]
Description: putative tpr domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-10   39.4   1.4    0.00061   19.5   0.6    4.9  5  TPR_1     Tetratricopeptide repeat
    2.1e-09   36.9   0.1    0.00066   19.3   0.0    4.7  5  TPR_11    TPR repeat
    9.7e-08   31.6   9.4      0.028   14.5   1.0    6.1  7  TPR_2     Tetratricopeptide repeat
    2.2e-06   27.4   1.7     0.0027   17.8   1.0    4.3  5  TPR_8     Tetratricopeptide repeat
    2.3e-06   28.0   1.0     0.0071   16.8   0.1    4.1  4  TPR_19    Tetratricopeptide repeat
    9.6e-06   25.8   3.0     0.0055   17.0   2.8    4.0  4  TPR_12    Tetratricopeptide repeat
    0.00013   22.1   3.2      0.073   13.5   0.1    4.8  5  TPR_17    Tetratricopeptide repeat
     0.0003   20.6   3.6        1.6    8.9   0.3    4.3  4  TPR_7     Tetratricopeptide repeat
     0.0012   18.9   0.0     0.0012   18.9   0.0    3.0  3  TPR_9     Tetratricopeptide repeat
     0.0044   17.6   7.4       0.23   12.2   0.7    3.5  2  TPR_16    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   15.0   0.5      0.025   14.0   0.5    1.4  1  SNAP      Soluble NSF attachment protein, SNAP
      0.049   14.5  12.3        0.4   11.6   0.1    5.7  5  TPR_14    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.49   7.3e+02      18      27 ..     537     546 ..     535     548 .. 0.90
   2 !   19.5   0.6   4.1e-07   0.00061       1      34 []     555     588 ..     555     588 .. 0.91
   3 !   11.7   0.0   0.00012      0.18       1      32 [.     589     620 ..     589     622 .. 0.92
   4 ?    1.4   0.0      0.21   3.1e+02       1      14 [.     623     636 ..     623     636 .. 0.88
   5 ?   -2.8   0.0       4.4   6.5e+03      23      33 ..     681     691 ..     678     692 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.49
                 HHHHHHHHHH CS
       TPR_1  18 deAleyyekA 27 
                 + A+++y +A
  KKY15534.1 537 EHAIQHYTRA 546
                 78******99 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 4.1e-07
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 a+a   l+ +y k + y+ A+e+y+k L+ n +n
  KKY15534.1 555 ARAQRSLARLYSKEKSYELAIEAYKKSLQANRTN 588
                 6777789**********************99886 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00012
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnP 32 
                 a +++ lG + ++l++y  A e + + ++l+ 
  KKY15534.1 589 ASTWFSLGCVQLHLEDYPGAAESFTQMVRLDD 620
                 679***********************999986 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHHT CS
       TPR_1   1 akalynlGnayfkl 14 
                 a+ + nl++a++++
  KKY15534.1 623 AEGWSNLAVALLRM 636
                 799*******9875 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 4.4
                 HHHHHHHHSTT CS
       TPR_1  23 yyekALelnPn 33 
                 + e+AL+l  +
  KKY15534.1 681 ALERALTLKST 691
                 789***99866 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.89   1.3e+03      11      22 ..     537     548 ..     527     551 .. 0.79
   2 !   19.3   0.0   4.4e-07   0.00066       4      37 ..     565     598 ..     562     602 .. 0.88
   3 !   10.4   0.0   0.00028      0.41       8      41 ..     603     636 ..     600     636 .. 0.93
   4 ?   -2.3   0.0       2.6   3.9e+03      16      30 ..     681     695 ..     678     696 .. 0.81
   5 ?   -0.0   0.1      0.48   7.2e+02      14      30 ..     717     733 ..     717     733 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.89
      TPR_11  11 eeAieaYkkAlk 22 
                 e Ai++Y +A +
  KKY15534.1 537 EHAIQHYTRAWE 548
                 56*****99966 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 4.4e-07
      TPR_11   4 yyeqGkyeeAieaYkkAlkldPdnaeayynLGla 37 
                 y +   ye AieaYkk l+ + +na+ ++ LG +
  KKY15534.1 565 YSKEKSYELAIEAYKKSLQANRTNASTWFSLGCV 598
                 667789**************************66 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00028
      TPR_11   8 GkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                  +y++A e++ + ++ld ++ae ++nL++a++++
  KKY15534.1 603 EDYPGAAESFTQMVRLDDSDAEGWSNLAVALLRM 636
                 589***************************9875 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 2.6
      TPR_11  16 aYkkAlkldPdnaea 30 
                 a+++Al l+++++++
  KKY15534.1 681 ALERALTLKSTDVRL 695
                 789******999876 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.48
      TPR_11  14 ieaYkkAlkldPdnaea 30 
                 i+aY k l l+P+ a++
  KKY15534.1 717 IQAYIKLLTLRPSEANI 733
                 89***********9986 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.3         4   5.9e+03       1      30 [.     187     216 ..     187     217 .. 0.80
   2 ?   -2.5   0.0       5.2   7.8e+03      18      27 ..     537     546 ..     536     546 .. 0.87
   3 !   14.5   1.0   1.9e-05     0.028       1      34 []     555     588 ..     555     588 .. 0.92
   4 !   13.6   0.0   3.7e-05     0.056       2      32 ..     590     620 ..     589     622 .. 0.92
   5 ?    0.1   0.1      0.77   1.1e+03       1      13 [.     623     635 ..     623     636 .. 0.89
   6 ?   -1.4   0.1       2.4   3.6e+03      20      32 ..     678     690 ..     669     692 .. 0.83
   7 ?    2.0   0.0      0.19   2.8e+02       1      21 [.     791     811 ..     791     813 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4
       TPR_2   1 aealynlGlayyklgdyeeAleafekAlel 30 
                 ae l  ++ ++ + g   eA++++  A +l
  KKY15534.1 187 AEFLTDRAAIHTYYGLDGEARKDLASAARL 216
                 567778888888888889999999888776 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.2
       TPR_2  18 eeAleafekA 27 
                 e A++++ +A
  KKY15534.1 537 EHAIQHYTRA 546
                 679****998 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 1.9e-05
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 a+a   l+++y k + ye A+ea++k+l+ + +n
  KKY15534.1 555 ARAQRSLARLYSKEKSYELAIEAYKKSLQANRTN 588
                 577889***********************99886 PP

  == domain 4  score: 13.6 bits;  conditional E-value: 3.7e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                   ++ lG++ ++l dy  A+e f + ++ld 
  KKY15534.1 590 STWFSLGCVQLHLEDYPGAAESFTQMVRLDD 620
                 57**************************996 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.77
       TPR_2   1 aealynlGlayyk 13 
                 ae++ nl+ a+++
  KKY15534.1 623 AEGWSNLAVALLR 635
                 799*******987 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 2.4
       TPR_2  20 AleafekAleldP 32 
                 A+ a+e+Al l  
  KKY15534.1 678 ARLALERALTLKS 690
                 8999*****9865 PP

  == domain 7  score: 2.0 bits;  conditional E-value: 0.19
       TPR_2   1 aealynlGlayyklgdyeeAl 21 
                 +e++y l ++++ ++++  Al
  KKY15534.1 791 PELWYLLSQVHRWRNRPSSAL 811
                 699************999997 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   1.0   1.8e-06    0.0027       7      33 ..     561     587 ..     555     588 .. 0.91
   2 ?    4.9   0.0     0.024        36       1      32 [.     589     620 ..     589     622 .. 0.90
   3 ?   -2.3   0.0       5.1   7.6e+03      20      32 ..     678     690 ..     677     692 .. 0.80
   4 ?   -3.1   0.0         9   1.4e+04      21      32 ..     717     728 ..     716     729 .. 0.84
   5 ?   -2.8   0.0       7.3   1.1e+04       2      11 ..     792     801 ..     791     802 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.8e-06
                 HHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldpd 33 
                 l+++y+k + ye A+e+y+k l+++++
  KKY15534.1 561 LARLYSKEKSYELAIEAYKKSLQANRT 587
                 89*********************9986 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.024
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldp 32 
                 a+ ++ lg++ l l+dy  A e++ + ++ld 
  KKY15534.1 589 ASTWFSLGCVQLHLEDYPGAAESFTQMVRLDD 620
                 678*********************99999885 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 5.1
                 HHHHHHHHHHHHH CS
       TPR_8  20 Akeyyekaleldp 32 
                 A  ++e+al+l+ 
  KKY15534.1 678 ARLALERALTLKS 690
                 67789****9986 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 9
                 HHHHHHHHHHHH CS
       TPR_8  21 keyyekaleldp 32 
                 +++y k l+l+p
  KKY15534.1 717 IQAYIKLLTLRP 728
                 689999999998 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 7.3
                 CHHHHHHHHH CS
       TPR_8   2 eayynlgsiy 11 
                 e++y+l++++
  KKY15534.1 792 ELWYLLSQVH 801
                 79****9987 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       1.9   2.9e+03       9      46 ..     468     497 ..     463     503 .. 0.61
   2 !   16.8   0.1   4.7e-06    0.0071       9      61 ..     538     592 ..     535     595 .. 0.88
   3 !    6.3   0.0    0.0092        14       5      37 ..     603     635 ..     599     636 .. 0.93
   4 ?   -2.2   0.0       4.2   6.3e+03      25      46 ..     791     812 ..     790     817 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.9
      TPR_19   9 eAlalleqalqedpknaearllLAeallalgqldeAea 46 
                 +Al+++e+ lq  p   e++l    +l a+ q ++A++
  KKY15534.1 468 SALEIYER-LQMWP---EVAL----CLAATDQEKKAID 497
                 67777777.56555...3333....6666666666665 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 4.7e-06
      TPR_19   9 eAlalleqalqedpk.naearllLAeallalgqldeAealLdalpeedpdd.ary 61 
                  A++++++a++ + + +a+a+  LA+++ + + ++ A+++ ++ +++++ + + +
  KKY15534.1 538 HAIQHYTRAWEVSKGhYARAQRSLARLYSKEKSYELAIEAYKKSLQANRTNaSTW 592
                 59**********6666**************************9999998865655 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0092
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAealla 37 
                 +dy  A++ ++q+   d  +ae + +LA all 
  KKY15534.1 603 EDYPGAAESFTQMVRLDDSDAEGWSNLAVALLR 635
                 69*****************************97 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 4.2
      TPR_19  25 aearllLAeallalgqldeAea 46 
                 +e+++lL +++   +++  A +
  KKY15534.1 791 PELWYLLSQVHRWRNRPSSALD 812
                 799********99999999976 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.7   5.5e+03      28      36 ..     468     476 ..     463     496 .. 0.69
   2 !   17.0   2.8   3.7e-06    0.0055      22      75 ..     539     585 ..     535     587 .. 0.87
   3 ?    3.7   0.0     0.051        77      45      74 ..     589     618 ..     585     621 .. 0.88
   4 ?   -1.2   0.0       1.7   2.5e+03      49      71 ..     795     817 ..     790     822 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.7
      TPR_12  28 kaleiarrl 36 
                  alei++rl
  KKY15534.1 468 SALEIYERL 476
                 456666655 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 3.7e-06
      TPR_12  22 AlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 A++++ +a   ++ +  + h  +a+++r L+rly++ + ye A+e+++++l++ 
  KKY15534.1 539 AIQHYTRA---WEVS--KGH--YARAQRSLARLYSKEKSYELAIEAYKKSLQAN 585
                 78888888...5555..668..9****************************975 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.051
      TPR_12  45 attlrnLgrlyralgryeeAlelleealai 74 
                 a+t + Lg +++ l++y  A e +++ +++
  KKY15534.1 589 ASTWFSLGCVQLHLEDYPGAAESFTQMVRL 618
                 88999******************9997766 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 1.7
      TPR_12  49 rnLgrlyralgryeeAlelleea 71 
                 + L++++r ++r+  Al+  e+a
  KKY15534.1 795 YLLSQVHRWRNRPSSALDTEEKA 817
                 67888887778999999988887 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.35   5.2e+02       5      25 ..      41      61 ..      40      65 .. 0.87
   2 ?   -1.5   0.0       2.9   4.4e+03      17      33 ..     559     575 ..     543     576 .. 0.76
   3 !   13.5   0.1   4.9e-05     0.073       1      32 [.     577     608 ..     577     610 .. 0.91
   4 ?    3.0   0.0      0.11   1.6e+02       6      24 ..     616     634 ..     612     640 .. 0.85
   5 ?   -2.1   0.0       4.7     7e+03       2      19 ..     682     699 ..     681     704 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.35
      TPR_17  5 aleldPnnadaynnLAelllk 25
                +l ++P n+ +++  +++ l+
  KKY15534.1 41 FLLRNPENVTPLTDIGNAALN 61
                6889**********9998776 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.9
      TPR_17  17 nnLAelllknGdlmtAr 33 
                   LA+l++k + ++ A+
  KKY15534.1 559 RSLARLYSKEKSYELAI 575
                 57999999888887776 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 4.9e-05
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtA 32 
                 +y+k+l+ + +na  ++ L+ ++l++ d+  A
  KKY15534.1 577 AYKKSLQANRTNASTWFSLGCVQLHLEDYPGA 608
                 5************************9998655 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.11
      TPR_17   6 leldPnnadaynnLAelll 24 
                 ++ld ++a+ + nLA++ll
  KKY15534.1 616 VRLDDSDAEGWSNLAVALL 634
                 577889**********998 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 4.7
      TPR_17   2 ylkaleldPnnadaynnL 19 
                 +++al l  +++ ++ n+
  KKY15534.1 682 LERALTLKSTDVRLWDNY 699
                 689999999999999887 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.65   9.7e+02      11      25 ..     462     483 ..     454     496 .. 0.64
   2 ?   -2.9   0.0       6.4   9.6e+03      16      24 ..     537     545 ..     535     550 .. 0.83
   3 !    8.9   0.3    0.0011       1.6       5      27 ..     561     584 ..     559     589 .. 0.89
   4 !    8.7   0.0    0.0013         2       1      35 [.     591     623 ..     591     624 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.65
       TPR_7  11 rlGdyeeAielyeq.......s 25 
                 +lG  + A+e+ye+       +
  KKY15534.1 462 SLGGLRSALEIYERlqmwpevA 483
                 5555677999999955555552 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.4
       TPR_7  16 eeAielyeq 24 
                 e Ai++y++
  KKY15534.1 537 EHAIQHYTR 545
                 679****99 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0011
       TPR_7   5 LarlysrlGdyeeAielyeqsL.a 27 
                 Larlys++  ye Aie y++sL a
  KKY15534.1 561 LARLYSKEKSYELAIEAYKKSLqA 584
                 9*******************9944 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.0013
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdpeda 35 
                 +++ L+ ++  l dy  A+e ++q   ++ d++da
  KKY15534.1 591 TWFSLGCVQLHLEDYPGAAESFTQ--MVRLDDSDA 623
                 6789********************..666666665 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3       5.9   8.8e+03      34      57 ..     192     215 ..     188     218 .. 0.80
   2 !   18.9   0.0   8.1e-07    0.0012       2      63 ..     562     623 ..     561     629 .. 0.94
   3 ?   -0.6   0.1         1   1.6e+03      10      32 ..     674     696 ..     667     698 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.9
       TPR_9  34 dRGlllaqlGclsaAladLeayla 57 
                 dR+ ++   G   +A++dL  +++
  KKY15534.1 192 DRAAIHTYYGLDGEARKDLASAAR 215
                 888888888888899999988776 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 8.1e-07
       TPR_9   2 kaiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdap 63 
                  +++  e+ +e a++++   l+ +   ++ ++  G ++ +l+++ +A++ + ++++l+++++
  KKY15534.1 562 ARLYSKEKSYELAIEAYKKSLQANRTNASTWFSLGCVQLHLEDYPGAAESFTQMVRLDDSDA 623
                 568999**************************************************998765 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1
       TPR_9  10 dweralavverllllaPddpeer 32 
                 +   a  ++er l l++ d++++
  KKY15534.1 674 NRLSARLALERALTLKSTDVRLW 696
                 55667778999999*99999998 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.7   0.00015      0.23      19      63 ..     539     584 ..     535     590 .. 0.76
   2 !    7.7   0.0    0.0038       5.6       3      46 ..     595     635 ..     592     636 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00015
      TPR_16  19 aleaalkrdpssPd.aaeAllllgdaalrqgrlaeAaalyraalra 63 
                 a + +++++ +s    a+A+  l++++ + + +++A+++y++ l+a
  KKY15534.1 539 AIQHYTRAWEVSKGhYARAQRSLARLYSKEKSYELAIEAYKKSLQA 584
                 44445555544444589***********************999865 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0038
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalr 46 
                 l+   l + dy+ Aa+ +++ +++d     +ae + +l++a+lr
  KKY15534.1 595 LGCVQLHLEDYPGAAESFTQMVRLD---DSDAEGWSNLAVALLR 635
                 5566666789999999999999999...8899999999999986 PP

>> SNAP  Soluble NSF attachment protein, SNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.5   1.7e-05     0.025      98     182 ..     537     616 ..     534     621 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHTT-HHHH..HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
        SNAP  98 ekAieiytekgrfrra..AklkkeiaelyekelgdlekAieaYekAaelyeqeeakalankcllkvAelsaelekyekAieiyekva 182
                 e+Ai++yt++  ++++  A+ ++++a ly ke + +e AieaY+k  +      a+ +  + +  +  ++ +le+y+ A+e ++++ 
  KKY15534.1 537 EHAIQHYTRAWEVSKGhyARAQRSLARLYSKE-KSYELAIEAYKKSLQ------ANRTNASTWFSLGCVQLHLEDYPGAAESFTQMV 616
                 678999999988888766999999******99.999999999998876......444555555566666777888888888888765 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       4.3   6.4e+03      13      32 ..     462     480 ..     452     503 .. 0.61
   2 ?   11.6   0.1   0.00027       0.4       2      41 ..     556     595 ..     555     596 .. 0.93
   3 ?    3.6   0.0       0.1   1.5e+02      12      42 ..     600     630 ..     598     632 .. 0.90
   4 ?   -0.7   0.1       2.4   3.6e+03      20      38 ..     678     696 ..     659     702 .. 0.60
   5 ?    2.8   0.0      0.18   2.8e+02       1      22 [.     791     812 ..     791     813 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 4.3
      TPR_14  13 alGdpdeAiallrralalaP 32 
                  lG ++ A+++++r+ + +P
  KKY15534.1 462 SLGGLRSALEIYERL-QMWP 480
                 555566666666665.3333 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00027
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlll 41 
                 +a++ la+++     ++ Ai+++++ l+++ ++a +w+ l
  KKY15534.1 556 RAQRSLARLYSKEKSYELAIEAYKKSLQANRTNASTWFSL 595
                 78999*******************************9876 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.1
      TPR_14  12 lalGdpdeAiallrralalaPddaeawllla 42 
                 l+l+d+ +A++ + ++++l+ +dae w  la
  KKY15534.1 600 LHLEDYPGAAESFTQMVRLDDSDAEGWSNLA 630
                 789999*********************9998 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 2.4
      TPR_14  20 AiallrralalaPddaeaw 38 
                 A+ +l+ral l  +d ++w
  KKY15534.1 678 ARLALERALTLKSTDVRLW 696
                 4555666666655555555 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.18
      TPR_14   1 peallalaeallalGdpdeAia 22 
                 pe++++l ++++ + +p  A++
  KKY15534.1 791 PELWYLLSQVHRWRNRPSSALD 812
                 79***************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (926 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.50
# Mc/sec: 5586.54
//
Query:       KKY15535.1  [L=1637]
Description: putative dynactin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-71  241.3  13.8    1.2e-71  241.3  13.8    3.8  4  Dynactin        Dynein associated protein
    1.8e-22   79.1   0.1    3.6e-22   78.2   0.1    1.5  1  CAP_GLY         CAP-Gly domain
     0.0016   18.4  16.6     0.0016   18.4  16.6    8.8  8  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
  ------ inclusion threshold ------
        1.5    8.8   5.7        1.5    8.9   0.4    3.6  3  DASH_Dad4       DASH complex subunit Dad4
        2.1    8.5  10.2        3.1    8.0   0.6    4.4  2  YojJ            Bacterial membrane-spanning protein N-terminu


Domain annotation for each model (and alignments):
>> Dynactin  Dynein associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -11.5  12.2         5   1.8e+04     161     244 ..     612     690 ..     575     738 .. 0.55
   2 ?   -3.1   1.2      0.99   3.6e+03       2      23 ..     836     858 ..     830     880 .. 0.71
   3 !  241.3  13.8   3.3e-75   1.2e-71       2     286 .]     896    1176 ..     895    1176 .. 0.94
   4 ?   -2.9   1.4      0.86   3.1e+03     214     273 ..    1332    1366 ..    1298    1394 .. 0.53

  Alignments for each domain:
  == domain 1  score: -11.5 bits;  conditional E-value: 5
    Dynactin 161 aypElepvEraldslidllrrdeldekecleeLersialfehLaevhlaeeledlaeelldrvkllqsaldsiaaalgllkall 244
                 ++p+l+   r+l  +++ l++     ++ l+eL + +a +e+L++      +e+ + e  +++++ + + ++++  ++  k+ l
  KKY15535.1 612 SLPQLQEEKRRLEDILQKLQKKYQPQQQELDELRKQLANVESLVD-----GVERMEAEKDSEIEMANLDREMAEEMAESFKSEL 690
                 444555545777777777777777777777777777777777775.....2222222222223333333222222222222222 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.99
    Dynactin   2 qsdledlrasqqitese.aedls 23 
                 q+ +++l+a +q+t++e +++l 
  KKY15535.1 836 QAVNDELEADHQATQKElQAELD 858
                 78899999999999999444443 PP

  == domain 3  score: 241.3 bits;  conditional E-value: 3.3e-75
    Dynactin    2 qsdledlrasqqiteseaedlssqseammdlnlklqssasKaqakaIdlELrkleaeqasehleilqaflPdsFlergdrdsvlalLlfkRlafKae 98  
                  q+d +d+r+++qite+ea+d + +s+++mdl lklq+s+sKaq+k+Id+EL+kl+ae+ ++hl+ilq f  +sF  ++dr++v+alL+f+R+afKa 
  KKY15535.1  896 QKDFDDMRETRQITETEAADFNERSRTVMDLQLKLQTSESKAQMKKIDMELQKLKAEETQQHLTILQNFIVESF--EKDRKPVEALLRFRRIAFKAL 990 
                  99************************************************************************..66******************* PP

    Dynactin   99 LlasvvrekfelsslslkgsveeqlvfacellekLtwlsalldrfaaalsscsvetflkigsaypElepvEraldslidllrrdeldekecleeLer 195 
                  +++sv+r++ + +  + ++s +++l  + e+ ekL w++a++ rf ++ s+c+v++f+ +g+ay+E+e++Eral+ +i+ lr++eld + c++eL +
  KKY15535.1  991 IMKSVLRDQGGTK--ENRDS-TNDL-LRFEIQEKLEWINATSTRFITFGSHCTVQEFSTLGQAYYEVEALERALNVWIESLRTNELDVRYCATELNK 1083
                  *********9988..33344.4444.599******************************************************************** PP

    Dynactin  196 sialfehLaevhlaeeledlaeelldrvkllqsaldsiaaalgllkallqskledveee.de..easdllellqelitqarsakvvakkikrrL 286 
                  + a++ +L e ++++ l+++a+ l+ ++++++s+l+++ + l ++k ++ +   +ve++ ++  ++s++ ++lq+l+ q+rs+kvva+k+ ++L
  KKY15535.1 1084 FKAIMLDLGEKLIPSTLATEADALHCQTLMVESYLETVVTVLPVVKDIVLAVA-SVEDDvEAnaQSSSFTRKLQDLEFQTRSTKVVAGKVAKAL 1176
                  *************************************************9988.34444333459*************************9987 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 0.86
    Dynactin  214 dlaeelldrvkllqsaldsiaaalgllkallqskledveeedeeasdllellqelitqar 273 
                  ++ ee++ r++ll+s+++ ++++++++++l ++                          +
  KKY15535.1 1332 RQLEEQHIRIELLESRTKEVKSQAAIVRNLESEL-------------------------E 1366
                  3444444555555555555555555555443332.........................2 PP

>> CAP_GLY  CAP-Gly domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.1   9.9e-26   3.6e-22       3      65 .]     289     352 ..     287     352 .. 0.90

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 9.9e-26
     CAP_GLY   3 drvk.lkegrrGvvryvGpvpfakgewvGveldepnGkndGsvkgkrYFeckpnrGvFvrpekv 65 
                 d v  ++++  Gvvry G++ fa+g+wvG+el++p GkndGsv g+rYF c+p +G+Fv+p+ v
  KKY15535.1 289 DIVAiPNSKTPGVVRYAGTTAFADGVWVGIELESPDGKNDGSVRGQRYFACRPMHGMFVKPHTV 352
                 55543567778**************************************************975 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   8.2       1.1   3.8e+03      51      95 ..     586     633 ..     575     636 .. 0.73
   2 !   18.4  16.6   4.6e-07    0.0016       5      88 ..     637     717 ..     631     724 .. 0.80
   3 ?    2.3  19.6     0.043   1.5e+02       8     107 ..     741     840 ..     731     867 .. 0.63
   4 ?   -8.8  13.9         5   1.8e+04      24      94 ..     862     935 ..     839     970 .. 0.52
   5 ?   -1.8   0.1      0.81   2.9e+03      26      68 ..    1053    1095 ..    1051    1103 .. 0.79
   6 ?    0.0   0.2      0.22     8e+02      33      91 ..    1148    1206 ..    1129    1213 .. 0.70
   7 ?   -7.6  17.8         5   1.8e+04      10      89 ..    1297    1379 ..    1293    1409 .. 0.64
   8 ?    2.0   0.0     0.055     2e+02       7      85 ..    1426    1455 ..    1419    1492 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.1
  CENP-F_leu_zip  51 kaevetlkeeieelaeelreleldLva...lrsekeeLekelqkkqer 95 
                      +++e+l+++++ +++++ e + +L++   l++ek  Le  lqk q++
      KKY15535.1 586 AKKIEQLEAQVRIMERKRMEDREKLKSlpqLQEEKRRLEDILQKLQKK 633
                     567888888888888888777777665111568999998888888876 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 4.6e-07
  CENP-F_leu_zip   5 klhvlekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLeke 88 
                     +++ l++L++   + +sL d ve++e+e    +++ e + l+ E + + +e++k+e+e l++++++lel+++ lr+e++  ++e
      KKY15535.1 637 QQQELDELRKQLANVESLVDGVERMEAE---KDSEIEMANLDREMAEEMAESFKSELEALRAKTQDLELEIEVLREENDLFNEE 717
                     4555666666666666666666666666...5678899***************************************9987765 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.043
  CENP-F_leu_zip   8 vlekLKe.serkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelrel...eldLvalrsekeeLekelqkkqervse 98 
                     +l +L+e s+ k++ Lkd++ +Le++l++ e+ +++ +   E  ++     +e i el+e+l      e  +++l++ +  L+ e+ + +  +++
      KKY15535.1 741 ALIRLRElSQDKEEELKDQIGELEADLKDFEAVRNQYEAVQERLRK----SEETIGELREQLDAAdaqEEVIENLTETNARLQTEMGDLRGLIQD 831
                     444566646788999************9987766555555555555....455555555555433110344788888888888888888888888 PP

  CENP-F_leu_zip  99 Leslnssle 107
                     Le ++    
      KKY15535.1 832 LEDIQAVND 840
                     887765433 PP

  == domain 4  score: -8.8 bits;  conditional E-value: 5
  CENP-F_leu_zip  24 dkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrseke...eLekelqkkqe 94 
                       +    re  ++ ++ e+++  + + k ++ ++++  + ++e+++  e++ +++ +      +L+ +lq++ +
      KKY15535.1 862 SLIMDHRREFATQMRHIEELEFMVGKYKDTMAAVQKDFDDMRETRQITETEAADFNERSRtvmDLQLKLQTSES 935
                     44444456666666666666666666666666666666666666666665555444332200123333333222 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 0.81
  CENP-F_leu_zip   26 venLerelemseenqekvileaEtskaevetlkeeieelaeel 68  
                      ve+Ler l+   e++   +l++     e++++k+ +  l e+l
      KKY15535.1 1053 VEALERALNVWIESLRTNELDVRYCATELNKFKAIMLDLGEKL 1095
                      8899999999888888888888888888888887776666665 PP

  == domain 6  score: 0.0 bits;  conditional E-value: 0.22
  CENP-F_leu_zip   33 lemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqk 91  
                           +++++++ +  + k  + ++ + +ee+ ++   ++   +++ +  e+L++el  
      KKY15535.1 1148 SSSFTRKLQDLEFQTRSTKVVAGKVAKALEEMIQRSDSFNGASSEMFEPAETLAQELSL 1206
                      44455667777777888888888888888888888888877777777777777777765 PP

  == domain 7  score: -7.6 bits;  conditional E-value: 5
  CENP-F_leu_zip   10 ekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaee...lreleldLvalrsekeeLekel 89  
                      ++LK+s++ ++  ++   +L+++++   e + +  ++ E++   +e l++  +e +++    r+le++L++ r+   + +ke 
      KKY15535.1 1297 KELKASRELSAETEETLRRLQSDIQSKSEILAAKDRQLEEQHIRIELLESRTKEVKSQaaiVRNLESELEKARNATHKAQKEY 1379
                      56777777777777777777777777777777777777777777777777666665542225677777777775444444443 PP

  == domain 8  score: 2.0 bits;  conditional E-value: 0.055
  CENP-F_leu_zip    7 hvlekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeL 85  
                       ++++L +++ + dsL+  v  L+ e                                                    L
      KKY15535.1 1426 AMEQQLSAVKLEIDSLQAAVRYLKEENH-------------------------------------------------RL 1455
                      3344444444444444444444433333.................................................22 PP

>> DASH_Dad4  DASH complex subunit Dad4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.4   0.00041       1.5      13      59 ..     644     691 ..     634     701 .. 0.82
   2 ?   -1.6   0.2      0.78   2.8e+03       9      49 ..     804     847 ..     800     854 .. 0.67
   3 ?   -0.4   0.0      0.33   1.2e+03       8      40 ..    1250    1282 ..    1248    1284 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00041
   DASH_Dad4  13 LsRIiknvekLnesvvelnkel.eeinkkNknvelvsqlwenYqrnvq 59 
                 L+  ++nve L + v++++ e  +ei+++N + e++ ++ e++++ ++
  KKY15535.1 644 LRKQLANVESLVDGVERMEAEKdSEIEMANLDREMAEEMAESFKSELE 691
                 667789************9875279*****************998765 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.78
   DASH_Dad4   9 qsalLsRIiknvekLnesvve...lnkeleeinkkNknvelvsq 49 
                 q+ +++ + ++  +L   + +   l + le+i++ N ++e  +q
  KKY15535.1 804 QEEVIENLTETNARLQTEMGDlrgLIQDLEDIQAVNDELEADHQ 847
                 66666666666677777666511146888999999988887666 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.33
   DASH_Dad4    8 qqsalLsRIiknvekLnesvvelnkeleeinkk 40  
                  +q++++  + + +e L+  + eln++  +i+++
  KKY15535.1 1250 HQTDVFTAMTAVIEDLHTRLLELNNAATDITRA 1282
                  6888999999999************99999876 PP

>> YojJ  Bacterial membrane-spanning protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   2.8     0.084     3e+02      15      56 ..     613     654 ..     599     655 .. 0.83
   2 ?    8.0   0.6   0.00085       3.1      13      58 ..     793     837 ..     778     838 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.084
        YojJ  15 keeLeqiekeleevlkaldeedeClLcelesirekfaeletl 56 
                   +L++ + +le++l++l+++ +    el+++r+++a++e+l
  KKY15535.1 613 LPQLQEEKRRLEDILQKLQKKYQPQQQELDELRKQLANVESL 654
                 4578888999****************************9986 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00085
        YojJ  13 klkeeLeqiekeleevlkaldeedeClLcelesirekfaeletlas 58 
                 +l+e+L  +    eev+++l e + +l +e+ ++r  +++le + +
  KKY15535.1 793 ELREQLDAADA-QEEVIENLTETNARLQTEMGDLRGLIQDLEDIQA 837
                 67777765554.499**************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1637 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2507  (0.139829); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                       122  (0.00680462); expected 17.9 (0.001)
Passed Fwd filter:                        65  (0.00362541); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.92u 0.33s 00:00:02.25 Elapsed: 00:00:00.70
# Mc/sec: 7027.10
//
Query:       KKY15536.1  [L=794]
Description: putative sulfur metabolite repression control protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-43  144.1  22.9    1.4e-06   28.9   0.1    8.5  8  WD40         WD domain, G-beta repeat
    2.5e-13   49.7   1.0    5.6e-13   48.6   1.0    1.6  1  F-box-like   F-box-like
    5.4e-11   42.1   0.2    1.7e-10   40.5   0.2    2.0  1  F-box        F-box domain
    3.6e-09   36.8   0.3      0.073   13.4   0.0    5.7  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    7.3e-08   31.5   6.7       0.64    8.6   0.0    5.5  6  Nup160       Nucleoporin Nup120/160
    3.8e-05   23.6   0.0    0.00011   22.0   0.0    1.8  1  F-box_4      F-box
  ------ inclusion threshold ------
      0.023   15.0   0.0       0.05   13.9   0.0    1.6  1  PRANC        PRANC domain
      0.051   12.9   0.1       0.11   11.8   0.1    1.5  1  WD40_like    WD40-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.7e-08   3.9e-05       3      38 .]     454     488 ..     452     488 .. 0.88
   2 !   28.9   0.1   6.1e-10   1.4e-06       1      38 []     492     528 ..     492     528 .. 0.88
   3 !   28.1   0.2   1.1e-09   2.5e-06       1      38 []     532     568 ..     532     568 .. 0.94
   4 !   23.6   1.3   2.9e-08   6.4e-05       3      38 .]     573     609 ..     571     609 .. 0.91
   5 ?    0.3   0.0      0.69   1.5e+03       3      16 ..     615     629 ..     613     633 .. 0.77
   6 !    9.0   0.0    0.0012       2.7      23      38 .]     695     710 ..     683     710 .. 0.82
   7 !   20.2   0.1   3.4e-07   0.00077       1      38 []     714     750 ..     714     750 .. 0.89
   8 !   18.5   0.0   1.2e-06    0.0027       1      37 [.     754     789 ..     754     790 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.7e-08
                 EEEEEESS.SSEEEEEEETTSSE....EEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgaw....lasGsdDgtvriWd 38 
                 +l++++GH ++v +l      ++    la+Gs+D +++iWd
  KKY15536.1 454 KLKVFKGHtNGVMCL------QFldniLATGSYDAKIKIWD 488
                 6899****999****......77666589***********9 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 6.1e-10
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g+ +rtl GH +++++l  + d + l+sGs D+t+r+W+
  KKY15536.1 492 GNEIRTLHGHeKGIRCL--QFDDTKLISGSLDNTIRVWN 528
                 5789*************..55666688***********8 PP

  == domain 3  score: 28.1 bits;  conditional E-value: 1.1e-09
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g+c+  + GH ++v +l  + dg++lasGs D++++iW+
  KKY15536.1 532 GECISQYHGHeGGVIGL--HFDGNLLASGSVDQKIKIWN 568
                 689*******8888899..99*****************8 PP

  == domain 4  score: 23.6 bits;  conditional E-value: 2.9e-08
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++ +l GH  +v+s++ ++ ++ ++s+sdD+tvr+Wd
  KKY15536.1 573 TVFSLCGHkEWVNSVKIDSLSRTVFSASDDCTVRLWD 609
                 577889**777*************************9 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.69
                 EEEEEESS.SSEEEE CS
        WD40   3 clrtltGH.ssvtsl 16 
                  +r+++GH + v  +
  KKY15536.1 615 VIRVFKGHvGQVQQV 629
                 6899****7667655 PP

  == domain 6  score: 9.0 bits;  conditional E-value: 0.0012
                 SEEEEEETTSEEEEEE CS
        WD40  23 awlasGsdDgtvriWd 38 
                 +++++G  D+t+r+Wd
  KKY15536.1 695 KYMLTGALDNTIRLWD 710
                 45679*99*******9 PP

  == domain 7  score: 20.2 bits;  conditional E-value: 3.4e-07
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g+c+rt+ GH  ++++l    d   l+sG +Dg v++Wd
  KKY15536.1 714 GRCIRTFWGHvEGIWAL--AADTLRLVSGAEDGMVKVWD 750
                 68********9889999..66777799***********9 PP

  == domain 8  score: 18.5 bits;  conditional E-value: 1.2e-06
                 TEEEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgaw.lasGsdDgtvriW 37 
                 g+c  tltGH ++ t++a    g+w lasG++Dg +r++
  KKY15536.1 754 GKCDMTLTGHrGPATCVAL---GDWgLASGGEDGEIRVY 789
                 68999*****999888832...566************98 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   1.0   2.5e-16   5.6e-13       2      46 ..     287     330 ..     286     332 .. 0.95

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 2.5e-16
  F-box-like   2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlv 46 
                 s LP Ei  +I+ yL++++L+ +a+V+rrWr++a d+  +W+r++
  KKY15536.1 287 SALPAEISYKILCYLDTTSLCKAAQVSRRWRQLADDD-VVWHRMC 330
                 78********************************999.*****99 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.2   7.6e-14   1.7e-10       3      47 ..     286     330 ..     284     331 .. 0.95

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 7.6e-14
                 HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH CS
       F-box   3 lsrLPsevlrhILerLplsdllalrrVSkgwrilidsdrlwcksi 47 
                 ls LP e+  +IL++L++++l+ +++VS++wr+l d+d+ w++ +
  KKY15536.1 286 LSALPAEISYKILCYLDTTSLCKAAQVSRRWRQLADDDVVWHRMC 330
                 789**************************************9876 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   3.2e-05     0.073      45      90 ..     467     511 ..     434     513 .. 0.84
   2 ?    4.6   0.0     0.018        41      48      89 ..     510     550 ..     508     553 .. 0.85
   3 !    8.7   0.2   0.00093       2.1       8      79 ..     553     622 ..     545     630 .. 0.86
   4 ?    1.1   0.0      0.21   4.8e+02      53      76 ..     697     720 ..     694     731 .. 0.84
   5 ?    2.3   0.0     0.091     2e+02      52      88 ..     736     771 ..     722     778 .. 0.85
   6 ?   -1.1   0.0       1.1   2.4e+03      53      69 ..     777     793 ..     772     794 .] 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.2e-05
  ANAPC4_WD40  45 aWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  + +  +++La +  d ++++ d e+g+ +++l+ +++  + cl++ 
   KKY15536.1 467 CLQFLDNILATGSYDAKIKIWDLETGNEIRTLHGHEK-GIRCLQFD 511
                  4455789*************************99988.5****996 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.018
  ANAPC4_WD40  48 pdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                   d++ L  +  d+++r+ +  +g+++++++ ++   v  l++
   KKY15536.1 510 FDDTKLISGSLDNTIRVWNWRTGECISQYHGHEGG-VIGLHF 550
                  5778899999*******************988874.776666 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00093
  ANAPC4_WD40   8 DLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                  +L+A ++ d+++ +  ++ + v++l  +++++ v+s++     +    a +d +vrl d  +  v++ ++ +
   KKY15536.1 553 NLLASGSVDQKIKIWNFQDKTVFSL--CGHKEWVNSVKIDSLSRTVFSASDDCTVRLWDLDTRSVIRVFKGH 622
                  5899999999999999999999999..999999999999999999999999999999999999999887755 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.21
  ANAPC4_WD40  53 Lavaysdgevrlldaesgkvvhsl 76 
                  +  +  d+++rl d  +g++++++
   KKY15536.1 697 MLTGALDNTIRLWDTATGRCIRTF 720
                  667888**************9987 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.091
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                   L+ + +dg v++ d  +gk+  +l+ ++    tc+ 
   KKY15536.1 736 RLVSGAEDGMVKVWDPRTGKCDMTLTGHRGP-ATCVA 771
                  6899*****************9999998885.77764 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 1.1
  ANAPC4_WD40  53 Lavaysdgevrlldaes 69 
                  La + +dge+r+++ +s
   KKY15536.1 777 LASGGEDGEIRVYSFKS 793
                  89999******999765 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0053        12     230     255 ..     472     497 ..     462     501 .. 0.87
   2 !    8.6   0.0   0.00029      0.64     225     255 ..     507     537 ..     504     540 .. 0.85
   3 ?    0.5   0.0     0.081   1.8e+02     230     252 ..     552     574 ..     545     580 .. 0.84
   4 !    7.4   0.2   0.00066       1.5     230     255 ..     593     618 ..     583     632 .. 0.87
   5 !    8.2   0.1   0.00036      0.82     232     255 ..     696     719 ..     635     722 .. 0.83
   6 ?   -1.2   0.0      0.27   6.1e+02     239     255 ..     743     759 ..     737     762 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0053
                 TTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 230 qtylfalsrdgkLrvWnlltgkclat 255
                 +++l++ s d k+++W+l+tg  ++t
  KKY15536.1 472 DNILATGSYDAKIKIWDLETGNEIRT 497
                 689999**************998876 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00029
                 ....TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 225 vveigqtylfalsrdgkLrvWnlltgkclat 255
                 + + ++t l + s+d+++rvWn +tg c+++
  KKY15536.1 507 CLQFDDTKLISGSLDNTIRVWNWRTGECISQ 537
                 5555778888899***************986 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.081
                 TTEEEEEETT-EEEEEETTTTEE CS
      Nup160 230 qtylfalsrdgkLrvWnlltgkc 252
                  ++l++ s+d+k+++Wn +++++
  KKY15536.1 552 GNLLASGSVDQKIKIWNFQDKTV 574
                 5788999**********998875 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.00066
                 TTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 230 qtylfalsrdgkLrvWnlltgkclat 255
                 + ++f++s d ++r+W+l+t +++++
  KKY15536.1 593 SRTVFSASDDCTVRLWDLDTRSVIRV 618
                 5789*****************99886 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.00036
                 EEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 232 ylfalsrdgkLrvWnlltgkclat 255
                 y ++  +d+++r+W+++tg+c++t
  KKY15536.1 696 YMLTGALDNTIRLWDTATGRCIRT 719
                 6677789***************98 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 0.27
                 T-EEEEEETTTTEEEEE CS
      Nup160 239 dgkLrvWnlltgkclat 255
                 dg ++vW+ +tgkc +t
  KKY15536.1 743 DGMVKVWDPRTGKCDMT 759
                 999**********9665 PP

>> F-box_4  F-box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   4.9e-08   0.00011       3      56 ..     284     337 ..     282     374 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 4.9e-08
     F-box_4   3 dsLssLPlevlqhiaslLDsfsLsqLslvskllrevcssllqergiVllkWekk 56 
                 d Ls LP e+  +i+ +LD +sL++ ++vs++ r+++   +  + +  ++ ++k
  KKY15536.1 284 DFLSALPAEISYKILCYLDTTSLCKAAQVSRRWRQLADDDVVWHRMCEQHIDRK 337
                 679********************************9987776666666655555 PP

>> PRANC  PRANC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.2e-05      0.05      70      94 ..     284     308 ..     269     311 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.2e-05
       PRANC  70 slWnlLPiEIkykIleyLndkdLkn 94 
                 + ++ LP EI ykIl yL+ ++L++
  KKY15536.1 284 DFLSALPAEISYKILCYLDTTSLCK 308
                 67899*****************987 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   4.9e-05      0.11      12     142 ..     472     604 ..     466     629 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.9e-05
   WD40_like  12 gslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilvvtlDGtillslleneeevenek.ieedistvkviddklliGtnkGsiyvfsk 109
                  ++++ G+ d k+++ +le+++++  +++ e  +  + + dd +++ ++lD ti     + +e +++ +  e  +   + +++ l+ G+   +i +++ 
  KKY15536.1 472 DNILATGSYDAKIKIWDLETGNEIRTLHGHEKGIR-CLQFDDTKLISGSLDNTIRVWNWRTGECISQYHgHEGGVIGLHFDGNLLASGSVDQKIKIWNF 569
                 578899***********************999976.7788***********************88776615557999999*********9999999885 PP

   WD40_like 110 dlqleevllgqsseIkeikie..nnkiysLsesaf 142
                 + +++  l g++  ++++ki+  + +++s s++  
  KKY15536.1 570 QDKTVFSLCGHKEWVNSVKIDslSRTVFSASDDCT 604
                 54788888999999999998733577888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (794 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.59
# Mc/sec: 4065.42
//
Query:       KKY15537.1  [L=516]
Description: putative kinase activator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.1e-114  382.2   5.4   3.6e-114  382.0   5.4    1.0  1  APG17            Autophagy protein Apg17
    1.7e-05   23.2   1.3      0.016   13.4   0.1    2.3  2  HOOK             HOOK protein
    0.00067   19.7   3.7    0.00067   19.7   3.7    3.4  2  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP
     0.0023   16.8   5.9      0.074   11.8   0.1    3.6  4  Tektin           Tektin family
     0.0081   16.2   1.0        5.8    7.0   0.0    3.3  3  FAD-SLDH         Membrane bound FAD containing D-sorbitol deh
  ------ inclusion threshold ------
      0.019   14.9   4.9      0.078   12.9   0.5    3.5  3  Prefoldin_2      Prefoldin subunit
       0.11   12.7   0.3       0.25   11.6   0.3    1.6  1  RhoGEF           RhoGEF domain
       0.11   13.0  12.6        1.5    9.3   0.1    4.0  3  NPV_P10          Nucleopolyhedrovirus P10 protein
       0.11   11.5   0.2       0.23   10.5   0.2    1.4  1  Filo_VP35        Filoviridae VP35
       0.12   12.4   0.8          5    7.3   0.2    2.8  2  bZIP_1           bZIP transcription factor
       0.13   12.6   3.3          3    8.2   0.4    3.4  3  TSC22            TSC-22/dip/bun family
       0.22   12.2   8.7        7.8    7.2   0.1    4.5  4  YabA             Initiation control protein YabA
       0.23   10.3   6.0        2.2    7.0   0.1    2.4  2  CALCOCO1         Calcium binding and coiled-coil domain (CALC
       0.23   11.1   3.8        2.8    7.7   0.2    4.0  4  Nbl1_Borealin_N  Nbl1 / Borealin N terminal
       0.27   11.4   5.3       0.54   10.4   0.4    3.1  3  Fib_alpha        Fibrinogen alpha/beta chain family
        0.4   11.0   2.3        5.3    7.4   0.1    2.9  2  DUF2209          Uncharacterized protein conserved in archaea
       0.79   10.1   7.5        9.8    6.6   0.1    4.0  3  BLOC1_2          Biogenesis of lysosome-related organelles co
        1.1    9.9   7.5          3    8.4   0.3    4.0  4  HSCB_C           HSCB C-terminal oligomerisation domain
        1.2    9.2  10.3        6.4    6.8   0.1    4.1  4  DUF1664          Protein of unknown function (DUF1664)
        1.3    9.8   7.9         10    6.9   2.8    4.0  4  HWE_HK           HWE histidine kinase
        1.3    8.9   6.6        1.7    8.5   0.5    3.5  4  Sec34            Sec34-like family
        1.4    9.5   7.5       0.13   12.8   0.8    2.8  2  Hrs_helical      Hepatocyte growth factor-regulated tyrosine 
        5.3    7.1   7.0        1.6    8.7   0.1    3.1  3  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
          7    6.7   6.5         16    5.5   0.0    4.1  5  Sec2p            GDP/GTP exchange factor Sec2p
        7.4    5.7   7.9        2.4    7.3   2.2    2.7  2  DLP_helical      Dynamin-like helical domain
        8.4    6.7   6.3        8.3    6.8   0.2    3.8  5  DUF948           Bacterial protein of unknown function (DUF94


Domain annotation for each model (and alignments):
>> APG17  Autophagy protein Apg17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.0   5.4  5.2e-117  3.6e-114       2     396 .]      44     464 ..      43     464 .. 0.97

  Alignments for each domain:
  == domain 1  score: 382.0 bits;  conditional E-value: 5.2e-117
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHIIIIIIIIIIIIIIIIIHHHHHHHHHHHHHHHHHHHHHTSS-T CS
       APG17   2 hllaAkksLseaqtlcqrAnelltsarqeleeavkllakteflrdglkqQlkllekirkslerklekgkeefkdlikeldaanerLektlekLrktkve 100
                 hlla+k+sLs a  + +rA++++++ar+ le++++ +a+ +flr++l +Q+++le+++++l     +g+++f+ +++eld+an++Le+ ++ Lr+t v+
  KKY15537.1  44 HLLASKRSLS-AVGHLHRASTIISEARSTLERTAVTSARSAFLRRSLTSQIRILETVQSQLASLAWQGQSDFRLVVTELDEANAQLESAVNGLRNTVVD 141
                 9*********.**************************************************************************************** PP

                 TS........STGGGCS--TTTTHHHHHHHHHHHHHHHHHHHHHTTHH..HHHHHHHHHHH.........-------STCCHHHHHHHHHHHHHHHHHH CS
       APG17 101 psfrpegee.ktLlDFvdedsveelkealkesidelqaaqkkldssllefdtdlrelkkel.........sksksksessslipellkelesleeemAs 189
                 ++frp+++  ktL DFvde+ vee++e+l++ i+ l++a + l++++++f+++l+++k++l         ++ +s + ++++++ +++++e++++emA 
  KKY15537.1 142 QAFRPHEQVtKTLVDFVDEKPVEEIRENLRNGIEGLDNAINVLTEENTAFENELSSIKDALanstygkgeDSVESFNLKNPPLTAIIHDMEDHAKEMAV 240
                 *******66*******************************************************99987644555558999****************** PP

                 HHHHHHHHHHHHHHH....................................S-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       APG17 190 lLesLtnHfDqcvkAvkltegggalrraaae....................lseeereelleVlekDaaeledVvkelqerleemekakkllsekkeei 268
                  +esL++HfD+cv+A+++teggga+ ++ +                     +s+ee+ e+l+Vl +Da+e++dVv+e+q+r++eme + +++ ++++++
  KKY15537.1 241 SIESLVKHFDLCVTAIRHTEGGGAAAHNMITgdlpegldmenhvlnipthsISPEEHIEMLTVLNNDASEVDDVVTEVQDRISEMELQLDQILTHRDRT 339
                 ***********************9744444468****************************************************************** PP

                 HHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       APG17 269 ekllsalkkaleeleevgkklpeylaifkaeeeflerweeekekieekleeleeLrefYegFlsaYdklllEveRRraveekmekilkkarekLeklqe 367
                  +++sa++  +++le++ +klp y +   ++++f+++w++++ +i++ l+ l++Lr+ Y++F saY +l++Ev+RR++ +++m++i+++a+ +L++l+e
  KKY15537.1 340 LRTSSAISTSFHRLEALATKLPHYTS---QANRFRTTWADHEMQINDSLNSLSDLRDVYTHFISAYFGLIVEVDRRKRFNQHMNSIVREAQTQLQSLYE 435
                 **************************...********************************************************************** PP

                 HHHHHHHHHHHHSSSSSBGGGSTTGCC-- CS
       APG17 368 edrerReeFlaevGefLPedlwpglddpp 396
                 +d ++Re+F++++G++LP+d+wpgl dpp
  KKY15537.1 436 DDLAEREAFRHDQGDYLPSDIWPGLADPP 464
                 *************************9997 PP

>> HOOK  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   2.4e-05     0.016     154     247 ..     138     233 ..     115     249 .. 0.78
   2 !    8.9   0.2   0.00054      0.37     461     578 ..     278     392 ..     243     397 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.4e-05
        HOOK 154 slseeslgeldsqlrklleelkea..qeekdelaQrcheldkqlsllqeEknaLlaenkklqerlselengeesgtiqltskkylelqkqleqlqe 247
                 ++  +++   ++  ++l+++++e+   e +++l+  ++ ld+ + +l+eE++a+ +e +++++ l+++  g+ + +++ ++ k+  l+  +  +++
  KKY15537.1 138 TVVDQAFRPHEQVTKTLVDFVDEKpvEEIRENLRNGIEGLDNAINVLTEENTAFENELSSIKDALANSTYGKGEDSVESFNLKNPPLTAIIHDMED 233
                 445555666677777888877764226789**************************************9999999998899888877777666655 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00054
        HOOK 461 LqhENKmLklkqegseeekltelqelledanrrkneLetenrlanqrileLeaqveelqkalqeqgskaedssllkkkleehleklkevqeelqkkkeq 559
                 L+ EN +L++  +  + e+  e+ + l++     +e+++     ++ri+e+e q++++ ++ +     +   s++ ++le++  kl +  ++ ++ + +
  KKY15537.1 278 LDMENHVLNIPTHSISPEEHIEMLTVLNNDA---SEVDDVVTEVQDRISEMELQLDQILTHRDRTLRTSSAISTSFHRLEALATKLPHYTSQANRFRTT 373
                 7899999999988887777777777777554...45555555679************99999988888888889999********************** PP

        HOOK 560 leelepklssnkqkieele 578
                   + e +++ + +  ++l+
  KKY15537.1 374 WADHEMQINDSLNSLSDLR 392
                 *999999999887777665 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   3.7   9.8e-07   0.00067      21     122 ..      95     209 ..      89     225 .. 0.85
   2 ?    3.7   2.0     0.082        57      45      78 ..     309     342 ..     293     399 .. 0.45

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 9.8e-07
  Baculo_PEP_C  21 vLnairlqnvqilaqlatlldaietqLnalsedlksllaeldt...........rldt.lltnLt.dalnalqdtlrneLtnlnsiltnLlssvtNi 104
                   +L+++++q+++++ q ++++  + t+L++ +++l+s+++ l++           ++++ l++ ++ + + ++ ++lrn +++l++ ++ L+ + t  
    KKY15537.1  95 ILETVQSQLASLAWQGQSDFRLVVTELDEANAQLESAVNGLRNtvvdqafrpheQVTKtLVDFVDeKPVEEIRENLRNGIEGLDNAINVLTEENTAF 191
                   799**************************************99888888877774433033333313477788************************ PP

  Baculo_PEP_C 105 nstLnnllqalnnldlga 122
                   ++ L+++  al+n + g+
    KKY15537.1 192 ENELSSIKDALANSTYGK 209
                   *************98776 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.082
  Baculo_PEP_C  45 tqLnalsedlksllaeldtrldtlltnLtdalna 78 
                   ++++++ +++++ ++e++ +ld+ lt+ +++l +
    KKY15537.1 309 SEVDDVVTEVQDRISEMELQLDQILTHRDRTLRT 342
                   2222222222222222222222222222222222 PP

>> Tektin  Tektin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   0.00011     0.074      12      94 ..     119     202 ..     108     206 .. 0.87
   2 ?   -2.8   0.0       2.9     2e+03     260     292 ..     228     260 ..     223     267 .. 0.63
   3 ?    2.3   0.4     0.081        56      53      94 ..     309     350 ..     296     360 .. 0.66
   4 ?    3.2   0.1     0.044        31     318     353 ..     401     436 ..     400     442 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
      Tektin  12 aeaerneaerlrnesrrlideteektkktqadsnkrLeeRied..iefwkeeLekeleelkeeieaLeeekrrlekalealeepl 94 
                 +e ++++a +l++ ++ l++ + +++ + +++++k L + +++  +e  +e L + +e l++ i+ L+ee +  e++l+++++ l
  KKY15537.1 119 TELDEANA-QLESAVNGLRNTVVDQAFRPHEQVTKTLVDFVDEkpVEEIRENLRNGIEGLDNAINVLTEENTAFENELSSIKDAL 202
                 55555555.8999999*************************88779**********************************99877 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.9
      Tektin 260 knkleeqlkkvleeiaeleknieeLekairdke 292
                  + +e++ k++   i++l k+ +    air +e
  KKY15537.1 228 IHDMEDHAKEMAVSIESLVKHFDLCVTAIRHTE 260
                 456666666666666666666666666666655 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.081
      Tektin  53 ediefwkeeLekeleelkeeieaLeeekrrlekalealeepl 94 
                 ++++ + +e+++ ++e++ + +++ + ++r+ ++ +a++  +
  KKY15537.1 309 SEVDDVVTEVQDRISEMELQLDQILTHRDRTLRTSSAISTSF 350
                 566666666666666666666666666666666666655544 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.044
      Tektin 318 aqyrLveEvkeleetieaLkeklaeaeaslkaLert 353
                 a+++L+ Ev+  ++  + +++ ++ea+++l++L++ 
  KKY15537.1 401 AYFGLIVEVDRRKRFNQHMNSIVREAQTQLQSLYED 436
                 7899*****************************976 PP

>> FAD-SLDH  Membrane bound FAD containing D-sorbitol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       1.7   1.2e+03      63      95 ..     119     151 ..      50     163 .. 0.74
   2 !    7.0   0.0    0.0084       5.8      62     110 ..     181     230 ..     174     231 .. 0.92
   3 ?    5.5   0.1     0.023        16      57     121 ..     348     408 ..     319     423 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.7
    FAD-SLDH  63 aalvaedaefkaqlaaLaallekqkakdveall 95 
                 + l +++a+++++++ L + + +q+++  e++ 
  KKY15537.1 119 TELDEANAQLESAVNGLRNTVVDQAFRPHEQVT 151
                 456666777777777777777667666666655 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0084
    FAD-SLDH  62 yaalvaedaefkaqlaaLaallekqkakdveallaa.aaadaalkdlalk 110
                  + l++e+  f+++l++++++l++ ++ + e+ +++ + ++++l +++++
  KKY15537.1 181 INVLTEENTAFENELSSIKDALANSTYGKGEDSVESfNLKNPPLTAIIHD 230
                 6789*******************************99999**99999987 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.023
    FAD-SLDH  57 lgarlyaalvaedaefkaqlaaLaallekqkakdveallaaaaadaalkdlalkIisaWYlGvvg 121
                 ++ + ++al+++ +++++q+++  +  ++++++ ++ l++     ++l+d+++  isa++  +v+
  KKY15537.1 348 TSFHRLEALATKLPHYTSQANRFRTTWADHEMQINDSLNSL----SDLRDVYTHFISAYFGLIVE 408
                 34455799*******************99999999999999....9************8755555 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.7   1.2e+03      63      78 ..     117     132 ..      86     142 .. 0.61
   2 ?   12.9   0.5   0.00011     0.078      53     100 ..     156     203 ..     101     206 .. 0.79
   3 ?    1.3   0.3      0.47   3.2e+02      15      93 ..     309     330 ..     295     341 .. 0.47

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.7
                  HHHHHHHHHHHHHHHH CS
  Prefoldin_2  63 vkeeLeerketlekei 78 
                  v +eL+e  ++le  +
   KKY15537.1 117 VVTELDEANAQLESAV 132
                  2334444444444444 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00011
                  TEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  53 dvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelkeelq 100
                  d   ++++ee++e+L + +e l+  i+ l+++ +  e+el+ +k+ l 
   KKY15537.1 156 DFVDEKPVEEIRENLRNGIEGLDNAINVLTEENTAFENELSSIKDALA 203
                  4445789*************************************9986 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.47
                  HHHHHHHHHHHHHHHHHHHHHHHHHHS-TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  15 qqlaqqikqletqlkelelvleelelldedtkvyklvGdvlvkqdkeevkeeLeerketlekeiktlekqleklekele 93 
                  ++++  +++++ +++e+                                                         e +l+
   KKY15537.1 309 SEVDDVVTEVQDRISEM---------------------------------------------------------ELQLD 330
                  33333333333333333.........................................................33333 PP

>> RhoGEF  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   0.00036      0.25      51     125 ..     346     430 ..     295     438 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00036
                 HHHHHH.HHHHHHHH..........HHHTTSS-S-SHHHHHHHHSTHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTSG CS
      RhoGEF  51 lhrsfl.leeLeerl.......k..eseeqkeaqsigdvflkfadkfkkYseYcsnypnalkllkelskknkkfkafleeaeerp 125
                 +++sf  le+L+++l       +  +++  +++ +i d +++++d  + Y++++s y   +  +++ +++n++++++++ea+ + 
  KKY15537.1 346 ISTSFHrLEALATKLphytsqaNrfRTTWADHEMQINDSLNSLSDLRDVYTHFISAYFGLIVEVDRRKRFNQHMNSIVREAQTQL 430
                 332333677777777877665515544555666799*******999999******************************988764 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.4         1   6.9e+02      22      55 ..      98     132 ..      89     142 .. 0.74
   2 ?    9.3   0.1    0.0022       1.5      18      66 ..     153     203 ..     147     217 .. 0.85
   3 ?    7.2   2.5    0.0099       6.8       5      37 ..     300     332 ..     298     393 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 1
     NPV_P10  22 alqqqvddvqen.lpdvtelnekLdaqsaqLaele 55 
                  +q+q+++++ +   d+  + ++Ld+ +aqL++  
  KKY15537.1  98 TVQSQLASLAWQgQSDFRLVVTELDEANAQLESAV 132
                 57777877775514578888999999999998754 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0022
     NPV_P10  18 dkVdalqqq.vddvqenlpd.vtelnekLdaqsaqLaeletkvenIqdiLn 66 
                 + Vd ++++ v++++enl++ ++ l + ++ ++++ +++e+++++I+d L 
  KKY15537.1 153 TLVDFVDEKpVEEIRENLRNgIEGLDNAINVLTEENTAFENELSSIKDALA 203
                 55676765439*******886999************************997 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0099
     NPV_P10   5 iLlvIradikavddkVdalqqqvddvqenlpdv 37 
                  L+v  +d ++vdd V+ +q+++ +++ +l ++
  KKY15537.1 300 MLTVLNNDASEVDDVVTEVQDRISEMELQLDQI 332
                 699999*****************9999888775 PP

>> Filo_VP35  Filoviridae VP35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00033      0.23      74     155 ..     299     377 ..     289     384 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00033
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH.HHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   Filo_VP35  74 dllivvnrqiidiestlseletrvtelerqlheikpvldma.ktlealskvlaemlakydllvistGratataaateaylaeh 155
                 ++l+v+n+  ++++ +++e++ r+ e+e ql +i    d + +t +a+s +      + + l       t+ a  + + +a+h
  KKY15537.1 299 EMLTVLNNDASEVDDVVTEVQDRISEMELQLDQILTHRDRTlRTSSAISTS----FHRLEALATKLPHYTSQANRFRTTWADH 377
                 7899***************************88865554322555555544....4444445555555555555555555555 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.28   1.9e+02      35      56 ..     118     139 ..     116     141 .. 0.89
   2 ?    7.3   0.2    0.0073         5      25      56 ..     171     202 ..     164     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  35 vkaLekeNksLkseleelkkev 56 
                 v +L++ N++L s ++ l+++v
  KKY15537.1 118 VTELDEANAQLESAVNGLRNTV 139
                 679*************999876 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0073
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  25 qaeieeLerrvkaLekeNksLkseleelkkev 56 
                 +  ie L +   +L++eN++  +el+++k+  
  KKY15537.1 171 RNGIEGLDNAINVLTEENTAFENELSSIKDAL 202
                 5668999999******************9976 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0       0.2   1.4e+02      22      46 ..     117     141 ..     113     151 .. 0.83
   2 ?    8.2   0.4    0.0044         3      13      45 ..     164     196 ..     162     204 .. 0.85
   3 ?   -2.0   0.1       6.9   4.7e+03      16      30 ..     315     329 ..     311     344 .. 0.59

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.2
       TSC22  22 kIkeLeernseleeENslLkalasp 46 
                  ++eL e n++le+  + L++++  
  KKY15537.1 117 VVTELDEANAQLESAVNGLRNTVVD 141
                 689************9999987755 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0044
       TSC22  13 rEeVevLkekIkeLeernseleeENslLkalas 45 
                  E  e+L++ I  L + ++ l eEN+ + + +s
  KKY15537.1 164 EEIRENLRNGIEGLDNAINVLTEENTAFENELS 196
                 56669********************98876665 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 6.9
       TSC22  16 VevLkekIkeLeern 30 
                 V + +++I e+e + 
  KKY15537.1 315 VTEVQDRISEMELQL 329
                 444555555555444 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.49   3.4e+02      11      57 ..      97     144 ..      86     159 .. 0.68
   2 ?    7.2   0.1     0.011       7.8      14      59 ..     164     209 ..     151     221 .. 0.78
   3 ?   -1.2   0.0       4.6   3.2e+03       6      31 ..     224     249 ..     219     255 .. 0.79
   4 ?    3.9   0.7      0.12        80      14      76 ..     319     391 ..     306     438 .. 0.42

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.49
                 HHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXX CS
        YabA  11 eeleeqleellee.leelkeelaelleenaeLeleneklrerleeeek 57 
                 e++++ql++l  +  ++ +  ++el e na+Le   + lr+++ ++  
  KKY15537.1  97 ETVQSQLASLAWQgQSDFRLVVTELDEANAQLESAVNGLRNTVVDQAF 144
                 45555666655431567888999999*********9999999843333 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXX CS
        YabA  14 eeqleelleeleelkeelaelleenaeLeleneklrerleeeekke 59 
                 ee  e+l + +e l ++++ l+een+++e e +++++ l++++  +
  KKY15537.1 164 EEIRENLRNGIEGLDNAINVLTEENTAFENELSSIKDALANSTYGK 209
                 55566788899**************************996554433 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 4.6
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA   6 lfdkleeleeqleelleeleelkeel 31 
                 l++ ++++e++ +e+  ++e+l +++
  KKY15537.1 224 LTAIIHDMEDHAKEMAVSIESLVKHF 249
                 56678899999999999999987765 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..........XXXXXXXXXXXXXXXXXXXXXXXX CS
        YabA  14 eeqleelleeleelkeelaelleenaeLeleneklrerl..........eeeekkekekkkelsegkenLarl 76 
                 +++++e+  +l+++ ++  ++l   +++++  ++l  +           ++ +++ ++++ +++++ ++L+ l
  KKY15537.1 319 QDRISEMELQLDQILTHRDRTLRTSSAISTSFHRLEALAtklphytsqaNRFRTTWADHEMQINDSLNSLSDL 391
                 4444444444444444444444444444444333333333333333433222222222233333333333322 PP

>> CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0032       2.2      74     177 ..     117     220 ..      97     247 .. 0.76
   2 ?    5.2   1.3     0.011       7.8     205     291 ..     298     384 ..     284     445 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0032
    CALCOCO1  74 erkelesrveelkeelkesrekveele.ekqkelerlseelaeeksalleakeesearirELEeDiktltqralekEteLeRlkerakkalaqrkeeea 171
                  ++el +  ++l+++++ +r+ v + + +++++++++     +ek +  e +e+ ++ i  L++ i+ lt+     E eL  +k+     +  + e+  
  KKY15537.1 117 VVTELDEANAQLESAVNGLRNTVVDQAfRPHEQVTKTLVDFVDEKPV-EEIRENLRNGIEGLDNAINVLTEENTAFENELSSIKDALANSTYGKGEDSV 214
                 45677777777777777777765544415555555555556666654.5778888999****************************9999999999988 PP

    CALCOCO1 172 erkqlq 177
                 e  +l+
  KKY15537.1 215 ESFNLK 220
                 877766 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.011
    CALCOCO1 205 dtqvlqLqdtittltqkLttAqrkeaenEallkelrslqerlaaSerkvegLkeeLssvaaqrdrtqaeLHqaRleaAqltlqLada 291
                    +  L+++ +++ + +t+ q ++ e+E  l+++ + ++r      +  +  + L+++a++  + +++  + R   A+  +q+ d+
  KKY15537.1 298 IEMLTVLNNDASEVDDVVTEVQDRISEMELQLDQILTHRDRTLRTSSAISTSFHRLEALATKLPHYTSQANRFRTTWADHEMQINDS 384
                 455668999*******************************97666666666667799999999999999999999999998888875 PP

>> Nbl1_Borealin_N  Nbl1 / Borealin N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.61   4.2e+02      17      37 ..     163     183 ..     160     184 .. 0.90
   2 ?   -1.3   0.0       2.6   1.8e+03      16      33 ..     227     244 ..     224     254 .. 0.66
   3 ?    7.7   0.2     0.004       2.8      11      29 ..     316     334 ..     311     342 .. 0.87
   4 ?   -1.5   0.2         3   2.1e+03      16      35 ..     411     430 ..     409     433 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.61
  Nbl1_Borealin_N  17 irrlraelelllktlrnrfel 37 
                      ++++r++l + ++ l+n++++
       KKY15537.1 163 VEEIRENLRNGIEGLDNAINV 183
                      689**************9986 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.6
  Nbl1_Borealin_N  16 Rirrlraelelllktlrn 33 
                       i+ ++ +++ ++ ++++
       KKY15537.1 227 IIHDMEDHAKEMAVSIES 244
                      566677777666666654 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.004
  Nbl1_Borealin_N  11 lEveeRirrlraelelllk 29 
                      +Ev++Ri++++ +l+++l+
       KKY15537.1 316 TEVQDRISEMELQLDQILT 334
                      7***************997 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 3
  Nbl1_Borealin_N  16 Rirrlraelelllktlrnrf 35 
                      R +r++ ++++++ ++++++
       KKY15537.1 411 RRKRFNQHMNSIVREAQTQL 430
                      66777777777777776665 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.65   4.5e+02      30      63 ..     167     200 ..     112     205 .. 0.55
   2 ?    1.5   0.1      0.44   3.1e+02      29      69 ..     166     206 ..     160     248 .. 0.78
   3 ?   10.4   0.4   0.00079      0.54      28     113 ..     313     397 ..     308     418 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.65
                 CCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHH CS
   Fib_alpha  30 ekdvkkdlekleneleeisnstkeaeelvkeikd 63 
                 ++++++ +e l n ++ ++++++  e+  ++ikd
  KKY15537.1 167 RENLRNGIEGLDNAINVLTEENTAFENELSSIKD 200
                 3344444444444444444444444444444444 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.44
                 CCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  29 yekdvkkdlekleneleeisnstkeaeelvkeikdslrekq 69 
                  ++++++ +e l n ++ ++++++  e+  ++ikd l++  
  KKY15537.1 166 IRENLRNGIEGLDNAINVLTEENTAFENELSSIKDALANST 206
                 56677888888888888888888888888888888877655 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00079
                 CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHH CS
   Fib_alpha  28 kyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvles 113
                 ++ ++v+++++++e +l++i      + +++++i++s ++ ++ +++    +++ +++ ++  ++ + +i++  +++  L++v+ +
  KKY15537.1 313 DVVTEVQDRISEMELQLDQILTHRDRTLRTSSAISTSFHRLEALATKLP-HYTSQANRFRTTWADHEMQINDSLNSLSDLRDVYTH 397
                 56689**********************************9999999655.55555678888*********************9986 PP

>> DUF2209  Uncharacterized protein conserved in archaea (DUF2209)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.29     2e+02      36      91 ..     148     203 ..     122     210 .. 0.84
   2 ?    7.4   0.1    0.0077       5.3      27      74 ..     287     335 ..     283     355 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.29
     DUF2209  36 eqvkilvvaseeepkledvvklieeaveelkeegtivaEkGelynepewlveailk 91 
                 eqv+ ++v   +e+ +e++ + + + +e+l++   +++E+   ++++   ++  l+
  KKY15537.1 148 EQVTKTLVDFVDEKPVEEIRENLRNGIEGLDNAINVLTEENTAFENELSSIKDALA 203
                 566666677778888999999********************999999888877765 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0077
     DUF2209  27 vsadriekveqvkilvvaseeepkledvvklieeaveel.keegtivaE 74 
                 + +++i+  e++++l+v ++++ +++dvv+++++ ++e+  + + i++ 
  KKY15537.1 287 IPTHSISPEEHIEMLTVLNNDASEVDDVVTEVQDRISEMeLQLDQILTH 335
                 5566777788999999**********************95455677665 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.77   5.3e+02      77      95 ..     114     132 ..      88     133 .. 0.83
   2 ?    3.8   0.4       0.1        71       5      45 ..     164     204 ..     160     250 .. 0.70
   3 ?    6.6   0.1     0.014       9.8      20      90 ..     296     366 ..     291     371 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.77
     BLOC1_2  77 LeeavseLDeyskeLEakf 95 
                 +  +v eLDe   +LE+ +
  KKY15537.1 114 FRLVVTELDEANAQLESAV 132
                 5668999999999999865 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.1
     BLOC1_2   5 ekvskyleaeleatvedyklLeklNeaasekykklkdvaas 45 
                 e++++ l++ +e+  + +++L++ N+a +++  ++kd++a+
  KKY15537.1 164 EEIRENLRNGIEGLDNAINVLTEENTAFENELSSIKDALAN 204
                 56677788888888888999999999999998888887765 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.014
     BLOC1_2  20 edyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLDeyske 90 
                 e++++L+ lN+ ase  + +++v + +++   +l++   + +  l+   +i ++  +Le+++ +L +y+++
  KKY15537.1 296 EHIEMLTVLNNDASEVDDVVTEVQDRISEMELQLDQILTHRDRTLRTSSAISTSFHRLEALATKLPHYTSQ 366
                 6788889999888875555555555555555577777778899999999*******************987 PP

>> HSCB_C  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       9.2   6.4e+03      40      49 ..     122     131 ..      97     145 .. 0.62
   2 ?    0.2   0.1       1.6   1.1e+03      11      43 ..     165     196 ..     155     212 .. 0.57
   3 ?    8.4   0.3    0.0044         3      22      54 ..     305     337 ..     295     358 .. 0.79
   4 ?    2.2   0.1      0.37   2.5e+02      26      56 ..     410     439 ..     378     446 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 9.2
                 HHHHHHHHHH CS
      HSCB_C  40 eeleaeleea 49 
                 +e  a+le+a
  KKY15537.1 122 DEANAQLESA 131
                 2222222222 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.6
                 HHHHHHHCGGGSSSHHHHHHHHHHHHHHHHHHH CS
      HSCB_C  11 elrEeleeaeeaadkeeleelkaeveerieele 43 
                 e+rE+l +  e  d ++++ l +e+++ ++el 
  KKY15537.1 165 EIRENLRNGIEGLD-NAINVLTEENTAFENELS 196
                 45555555533333.555555555555444433 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0044
                 SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT- CS
      HSCB_C  22 aadkeeleelkaeveerieeleaeleeafekkd 54 
                 ++d++e++++  ev+ ri e+e +l++ + ++d
  KKY15537.1 305 NNDASEVDDVVTEVQDRISEMELQLDQILTHRD 337
                 3489***********************994443 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.37
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HH CS
      HSCB_C  26 eeleelkaeveerieeleaeleeafekkdle 56 
                 ++ +++++ +++ ++e  ++l++++ ++dl+
  KKY15537.1 410 DRRKRFNQHMNSIVREAQTQLQSLY-EDDLA 439
                 6778999999999***********9.44544 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.55   3.8e+02      71     118 ..      85     133 ..      45     143 .. 0.58
   2 ?    6.8   0.1    0.0093       6.4      44      98 ..     148     204 ..     144     217 .. 0.86
   3 ?    4.4   0.6     0.054        37      88     120 ..     300     332 ..     291     336 .. 0.83
   4 ?   -1.2   0.0       2.8   1.9e+03      57     100 ..     391     434 ..     370     440 .. 0.63

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.55
     DUF1664  71 vdkkldeqkeiskeikeevtevr.edlseigedvesvkeavegleskle 118
                 + ++l +q++i + ++++++++  ++ s+++  v++++ea  +les ++
  KKY15537.1  85 LRRSLTSQIRILETVQSQLASLAwQGQSDFRLVVTELDEANAQLESAVN 133
                 4455555555555555555554323444555555555555555555544 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0093
     DUF1664  44 esvskqleqvs..eslaatkrhLssridrvdkkldeqkeiskeikeevtevredlse 98 
                 e+v+k l ++   + +++ +++L + i+ +d+ ++  +e  ++ ++e++++++ l++
  KKY15537.1 148 EQVTKTLVDFVdeKPVEEIRENLRNGIEGLDNAINVLTEENTAFENELSSIKDALAN 204
                 578888877762345999*********************************999876 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.054
     DUF1664  88 evtevredlseigedvesvkeavegleskleri 120
                  +t +++d se+++ v++v++ ++++e +l++i
  KKY15537.1 300 MLTVLNNDASEVDDVVTEVQDRISEMELQLDQI 332
                 567888999999999999999999999999887 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 2.8
     DUF1664  57 laatkrhLssridrvdkkldeqkeiskeikeevtevredlseig 100
                 l+++  h+ s    +  ++d  k+  +++++ v e++ +l+++ 
  KKY15537.1 391 LRDVYTHFISAYFGLIVEVDRRKRFNQHMNSIVREAQTQLQSLY 434
                 44444555555555556666777777777777777777766654 PP

>> HWE_HK  HWE histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.8     0.014        10       4      71 ..      59     126 ..      57     135 .. 0.91
   2 ?    1.4   0.0      0.75   5.2e+02      25      54 ..     161     190 ..     150     215 .. 0.82
   3 ?    0.5   0.1       1.5     1e+03      22      48 ..     306     332 ..     300     371 .. 0.71
   4 ?   -1.9   0.0       8.2   5.6e+03      17      46 ..     364     393 ..     349     400 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHHHHHSSSXS-HHHHHHHHHHHHHHHHHHHHHHHHCTTS-EEHHHHHHHHHHHHHH CS
      HWE_HK   4 HRvKNlLavvqsiarqtlrsaesleefaeklsgRLqALsaahdllsreewagaeLaelleeelapyed 71 
                 HR   +++ ++s  + t+ +++ ++ ++++l++ ++ L  +++ l++  w+g +  +l+ +el+  ++
  KKY15537.1  59 HRASTIISEARSTLERTAVTSARSAFLRRSLTSQIRILETVQSQLASLAWQGQSDFRLVVTELDEANA 126
                 99999***********************************************9999999888887765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.75
                 S-HHHHHHHHHHHHHHHHHHHHHHHHCTTS CS
      HWE_HK  25 esleefaeklsgRLqALsaahdllsreewa 54 
                 + +ee++e+l++ +  L +a ++l++e+ a
  KKY15537.1 161 KPVEEIRENLRNGIEGLDNAINVLTEENTA 190
                 5678999******************99865 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 1.5
                 SSXS-HHHHHHHHHHHHHHHHHHHHHH CS
      HWE_HK  22 rsaesleefaeklsgRLqALsaahdll 48 
                 + a++++++++++++R+  +    d +
  KKY15537.1 306 NDASEVDDVVTEVQDRISEMELQLDQI 332
                 567788889999999988776555544 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 8.2
                 HHHHSSSXS-HHHHHHHHHHHHHHHHHHHH CS
      HWE_HK  17 arqtlrsaesleefaeklsgRLqALsaahd 46 
                 ++q +r  ++ ++ + ++++ L++Ls   d
  KKY15537.1 364 TSQANRFRTTWADHEMQINDSLNSLSDLRD 393
                 456666666666777777777777776655 PP

>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.69   4.8e+02      40      83 ..     111     156 ..      71     198 .. 0.54
   2 ?   -1.1   0.0       2.3   1.6e+03      74     102 ..     278     305 ..     276     309 .. 0.87
   3 ?    7.6   1.1    0.0046       3.2      24      88 ..     306     368 ..     289     398 .. 0.72
   4 ?    8.5   0.5    0.0024       1.7       3      90 ..     320     408 ..     318     424 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.69
       Sec34  40 tsslheaceqlleeqkrleelaeeieekL..kyFeeldpitrkLns 83 
                  s+++    +l e + +le+ ++ +++ +  + F+  +++t+ L  
  KKY15537.1 111 QSDFRLVVTELDEANAQLESAVNGLRNTVvdQAFRPHEQVTKTLVD 156
                 3445555555555555555555555555544455555565555544 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.3
       Sec34  74 ldpitrkLnspgsslvksesFlemLkklD 102
                 ld+ ++ Ln p++s ++ e+ +emL+ l+
  KKY15537.1 278 LDMENHVLNIPTHS-ISPEEHIEMLTVLN 305
                 6777889*******.**********9887 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0046
       Sec34  24 eqLeeleekfksvsektsslheaceqlleeqkrleelaeeieekLkyFeeldpitrkLnspgss.l 88 
                 ++ +e+ + +++v+++ s+++ + +q+l++++r  +++ +i++    F  l+ + +kL + +s+  
  KKY15537.1 306 NDASEVDDVVTEVQDRISEMELQLDQILTHRDRTLRTSSAISTS---FHRLEALATKLPHYTSQaN 368
                 55566777778888888888888888888888888888888864...7788888888888877732 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0024
       Sec34   3 dqLeskeeecdelleqtdealeqLeeleekfksvsektsslheaceqlleeqkrleelaeeieekLkyFeeldpitrkLnspgss.lvk 90 
                 d++++ e ++d++l++ d++l++ + ++++f++ ++  ++l + + q  + ++   +   +i++ L+  ++l  + +++ s+ +  +v+
  KKY15537.1 320 DRISEMELQLDQILTHRDRTLRTSSAISTSFHRLEALATKLPHYTSQANRFRTTWADHEMQINDSLNSLSDLRDVYTHFISAYFGlIVE 408
                 678889999**********************************************************9999999999998888876664 PP

>> Hrs_helical  Hepatocyte growth factor-regulated tyrosine kinase substrate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       9.3   6.4e+03      58      79 ..     171     192 ..     162     202 .. 0.53
   2 ?   12.8   0.8   0.00019      0.13       3      85 ..     315     395 ..     313     400 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 9.3
  Hrs_helical  58 raeyeslqdklaqikeareald 79 
                  r+ +e+l++ ++ + e  +a++
   KKY15537.1 171 RNGIEGLDNAINVLTEENTAFE 192
                  4444555554444444444443 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00019
  Hrs_helical   3 lealkssveifvnrmksn.sarGrsianDsavqslFqkltamhsqllkriqeqeekraeyeslqdklaqikearealdalreeh 85 
                  +++++  ++ ++ ++ +  ++r r++ + sa+ + F++l+a+ ++l +++++++  r+++    d+  qi+++ ++l +lr+ +
   KKY15537.1 315 VTEVQDRISEMELQLDQIlTHRDRTLRTSSAISTSFHRLEALATKLPHYTSQANRFRTTWA---DHEMQINDSLNSLSDLRDVY 395
                  5666777777777776652579*******************************99999885...77788889999999888876 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       3.1   2.2e+03      93     107 ..     115     129 ..      65     140 .. 0.57
   2 ?    8.7   0.1    0.0023       1.6      47     123 ..     167     241 ..     159     251 .. 0.79
   3 ?    0.5   0.7      0.83   5.7e+02      22      38 ..     318     334 ..     295     435 .. 0.60

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 3.1
  CENP-F_leu_zip  93 qervseLeslnssle 107
                     +  v eL+++n +le
      KKY15537.1 115 RLVVTELDEANAQLE 129
                     223444444444444 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0023
  CENP-F_leu_zip  47 aEtskaevetlkeeieelaeelreleldLvalrsekeeLek.elqkkqervseLeslnsslenlleekEqekvqmkee 123
                      E+ ++ +e+l + i+ l+ee + +e +L++++   + L++    k  + v++ +  n  l+ ++++ E+  ++m  +
      KKY15537.1 167 RENLRNGIEGLDNAINVLTEENTAFENELSSIK---DALANsTYGKGEDSVESFNLKNPPLTAIIHDMEDHAKEMAVS 241
                     599999**********************99885...555541456777888888888888888888888887777655 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.83
  CENP-F_leu_zip  22 LkdkvenLerelemsee 38 
                     ++d++ ++e +l ++  
      KKY15537.1 318 VQDRISEMELQLDQILT 334
                     34444444444443333 PP

>> Sec2p  GDP/GTP exchange factor Sec2p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.024        16      34      76 ..      61     106 ..      59     111 .. 0.82
   2 ?   -2.2   0.0         6   4.2e+03      12      28 ..     121     137 ..     115     146 .. 0.56
   3 ?   -2.2   0.0       6.1   4.2e+03      21      24 ..     193     196 ..     163     240 .. 0.63
   4 ?    1.0   0.0       0.6   4.1e+02      50      82 ..     365     397 ..     355     401 .. 0.84
   5 ?   -0.7   0.1       2.1   1.5e+03      61      76 ..     418     433 ..     408     441 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.024
                 HHHHHHHHH...HHHHHHHHHHHHHHHHHTTHCHCCCHCTSSSSHH CS
       Sec2p  34 ANkmVaaar...kekealekkneklkeqLkeketlleslqeqLkeL 76 
                 A +++++ar   ++++    +   l++ L+ +  +le+ q+qL++L
  KKY15537.1  61 ASTIISEARstlERTAVTSARSAFLRRSLTSQIRILETVQSQLASL 106
                 556777788665556666788889*******************998 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 6
                 HHHHHHHHHHHHHHHHH CS
       Sec2p  12 aekekkklekEledLta 28 
                  ++++++le+ ++ L +
  KKY15537.1 121 LDEANAQLESAVNGLRN 137
                 44455555555555554 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 6.1
                 HHHH CS
       Sec2p  21 kEle 24 
                 +El 
  KKY15537.1 193 NELS 196
                 2222 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.6
                 HHHHHHHHHHTTHCHCCCHCTSSSSHHHHCTTT CS
       Sec2p  50 kkneklkeqLkeketlleslqeqLkeLkevlek 82 
                  + ++ ++  ++ e++++++ + L++L++v  +
  KKY15537.1 365 SQANRFRTTWADHEMQINDSLNSLSDLRDVYTH 397
                 567778888999****************99765 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 2.1
                 THCHCCCHCTSSSSHH CS
       Sec2p  61 eketlleslqeqLkeL 76 
                 + ++++++ q+qL++L
  KKY15537.1 418 HMNSIVREAQTQLQSL 433
                 4456666667777666 PP

>> DLP_helical  Dynamin-like helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   2.2    0.0034       2.4      35     173 ..      51     200 ..      48     221 .. 0.73
   2 ?    0.2   0.3      0.49   3.4e+02     110     126 ..     387     403 ..     298     447 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0034
  DLP_helical  35 klShIeeLqdateekikkngg.elalieetkksvirdvlerqlpeaeerleelekevekleesakriekelaelkkeieearielreelk........ 123
                  +lS +++L  a + + ++ +  e + + +++ + +r  l+ q+ + e+  ++l + + + +++++   +el e++ ++e a + lr+ ++        
   KKY15537.1  51 SLSAVGHLHRASTIISEARSTlERTAVTSARSAFLRRSLTSQIRILETVQSQLASLAWQGQSDFRLVVTELDEANAQLESAVNGLRNTVVdqafrphe 148
                  78999999999887777666535689999999******************************************************998621111111 PP

  DLP_helical 124 ayfsdLilqvkglsletieeFlerei.G.degivvgtkleneferqlekise 173
                  +  + L++ v+   +e+i+e l + i G d+ i+v t+ +++fe++l++i +
   KKY15537.1 149 QVTKTLVDFVDEKPVEEIRENLRNGIeGlDNAINVLTEENTAFENELSSIKD 200
                  2345566666666666666666666533223344555555566666666555 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.49
  DLP_helical 110 eieearielreelkayf 126
                   +++ r     +++ayf
   KKY15537.1 387 SLSDLRDVYTHFISAYF 403
                  33333333333333333 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       6.1   4.2e+03      30      58 ..      67      77 ..      53     111 .. 0.48
   2 ?   -1.5   0.1       4.5   3.1e+03      48      48 ..     160     160 ..     114     198 .. 0.59
   3 ?    0.4   0.1       1.2     8e+02      45      70 ..     224     249 ..     161     260 .. 0.64
   4 ?    6.8   0.2     0.012       8.3      23      59 ..     310     346 ..     300     370 .. 0.84
   5 ?   -2.2   0.0       7.5   5.2e+03      40      54 ..     417     431 ..     410     438 .. 0.58

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 6.1
      DUF948 30 eaaatieelekqvdpilkevedllakvne 58
                ea++t+e                   + +
  KKY15537.1 67 EARSTLER------------------TAV 77
                33333333..................322 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 4.5
      DUF948  48 e 48 
                 e
  KKY15537.1 160 E 160
                 1 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 1.2
      DUF948  45 ilkevedllakvnelledvneklekv 70 
                 ++  ++d+ ++++e++  +++ +++ 
  KKY15537.1 224 LTAIIHDMEDHAKEMAVSIESLVKHF 249
                 33333344444444444444444444 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.012
      DUF948  23 klkktldeaaatieelekqvdpilkevedllakvnel 59 
                 ++ ++++e++++i e+e q+d+il+  +++l+++ ++
  KKY15537.1 310 EVDDVVTEVQDRISEMELQLDQILTHRDRTLRTSSAI 346
                 5678999******************999999998874 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 7.5
      DUF948  40 kqvdpilkevedlla 54 
                 +++++i++e+++ l+
  KKY15537.1 417 QHMNSIVREAQTQLQ 431
                 455555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1181  (0.0658709); expected 358.6 (0.02)
Passed bias filter:                      775  (0.0432261); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.95u 0.36s 00:00:01.31 Elapsed: 00:00:00.57
# Mc/sec: 2730.49
//
Query:       KKY15538.1  [L=575]
Description: putative extragenic suppressor of the bimd6 mutation [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-71  237.6   0.2    7.7e-71  237.6   0.2    1.7  2  RIO1      RIO1 family
  ------ inclusion threshold ------
       0.05   13.5   0.1        1.2    9.0   0.0    2.2  2  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.6   0.2   8.6e-75   7.7e-71       1     187 [.     193     389 ..     193     390 .. 0.95
   2 ?   -3.0   0.7      0.53   4.8e+03      36      53 ..     531     548 ..     522     567 .. 0.52

  Alignments for each domain:
  == domain 1  score: 237.6 bits;  conditional E-value: 8.6e-75
                 EEEEEEETTTE....EEEEEEE-S---SS-HHHHCTTTSTTSTCG--GS-HHHHHHHHHHHHHHHHHHHHHTT--S--EEEEETTEEEEE--E.ETTEE CS
        RIO1   1 nVyhavsedgk....evaiKiyktstteFkkrkkyvsgekrfkdrksktnprklvklwaekEfrnLkrleeagvpvPkpielkrhvlvmefig.edgva 94 
                 nVyha s +++    + a+K+ykts+++Fk+r+kyv+ge+rf++ ++k+++r++vk+waekE+rnL+r+++ag+p P+p+ l+ hvl m+fig ++g++
  KKY15538.1 193 NVYHALSISDDgaerQRAVKVYKTSILVFKDRDKYVTGEFRFRQGYNKSSNRAMVKVWAEKEMRNLRRIHAAGIPSPEPLYLRLHVLAMDFIGdSKGNP 291
                 79***9944444566******************************************************************************99**** PP

                 GGBHHHCG.-....HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETTEEEE--GTTEEETTSTTHHHHHHHHHHHHHHHHHTTC-----HHH CS
        RIO1  95 apklkdve.e....eeeaeelyeevleemrklykeaglvHaDLSeyNvlvdedkvviIDvsQaveldhpnalefLerDveniikfFrrkgvekvdeee 187
                 ap+lkdve      e+ ++++y e++++mr++y++++lvHaDLSeyN+l+++ k++iIDvsQ+ve+dhp++l+fL++D++n+++fFrrk +++++e++
  KKY15538.1 292 APRLKDVEfVgedpESRWRSVYIELVAYMRVMYQTCRLVHADLSEYNILYHKHKPYIIDVSQSVEHDHPRSLDFLRMDIKNVSDFFRRKDIPILTERT 389
                 *******975667778899***********************************************************************99888765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.53
                 TTSTCG--GS-HHHHHHH CS
        RIO1  36 krfkdrksktnprklvkl 53 
                 krf+d+ +k+ +++ vk 
  KKY15538.1 531 KRFQDKSEKKAHKQAVKE 548
                 455555444444444332 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0    0.0067        60      38      61 ..     252     275 ..     242     294 .. 0.87
   2 ?    9.0   0.0   0.00013       1.2     102     192 ..     258     350 ..     255     355 .. 0.61

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.0067
                 HHHHHHHHHHHHTT-B--B-CTTB CS
         APH  38 rrevallrlLakagvpvPevlagd 61 
                 ++e + lr +++ag+p Pe+l+++
  KKY15538.1 252 EKEMRNLRRIHAAGIPSPEPLYLR 275
                 7899*****************954 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00013
                 HCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC......HHHHHHHHHHHHHHHH--S.SS-EEEE-SS-SGGGEEEC..TTEEEEE-- CS
         APH 102 laalhqvdpaalpladflaqdlellrqlesatarllaselld......lleeleeqvlaalaallpg.elptvllHgDlhpgNllvdpddgrvtGviD 192
                 l+++h+++ ++  + + + + l+++   +s   + +a++l+d      + e +++ v+ +l a ++   +  +l+H Dl+  N+l +  +++  ++iD
  KKY15538.1 258 LRRIHAAGIPSPEPLYLRLHVLAMDFIGDSK--GNPAPRLKDvefvgeDPESRWRSVYIELVAYMRVmYQTCRLVHADLSEYNILYH--KHKP-YIID 350
                 6666666644333333333444444444444..45555555544556666666666665555555556677789*************..6665.7999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1437  (0.0801495); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.52
# Mc/sec: 3340.14
//
Query:       KKY15539.1  [L=1276]
Description: putative chitin synthase activator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-46  154.4  24.6    9.4e-08   32.5   0.1    7.7  7  Sel1      Sel1 repeat


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.6   1.1e-11     2e-07       1      38 []     972    1008 ..     972    1008 .. 0.94
   2 !   32.5   0.1   5.3e-12   9.4e-08       1      38 []    1009    1048 ..    1009    1048 .. 0.86
   3 !   29.7   0.3   3.9e-11   7.1e-07       1      37 [.    1049    1084 ..    1049    1085 .. 0.92
   4 !   13.2   0.0   6.2e-06      0.11       1      38 []    1089    1127 ..    1089    1127 .. 0.85
   5 !   25.9   0.0   6.4e-10   1.1e-05       3      37 ..    1130    1163 ..    1129    1164 .. 0.94
   6 !   11.8   0.1   1.7e-05       0.3       6      37 ..    1170    1201 ..    1166    1202 .. 0.77
   7 !   22.6   0.6     7e-09   0.00013       1      38 []    1203    1238 ..    1203    1238 .. 0.93

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 1.1e-11
        Sel1    1 aeAmyrLGmfylylnGl.gvpkDpekAiewyekAAeqGd 38  
                  aeAm+ L+   +y +G  g+  Dp++A+++y+ AA++G+
  KKY15539.1  972 AEAMFYLA--DCYGTGGlGLQVDPQEAFKLYQSAAKLGH 1008
                  79******..999999977888****************9 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 5.3e-12
        Sel1    1 aeAmyrLGmfylylnGl....gvpkDpekAiewyekAAeqGd 38  
                  + A+yr++   + + G     g+++Dp +A++wy++AA +Gd
  KKY15539.1 1009 PQAAYRVA--VCCEMGHeeggGTKRDPLRAVQWYKRAATMGD 1048
                  579*****..666777777636******************97 PP

  == domain 3  score: 29.7 bits;  conditional E-value: 3.9e-11
        Sel1    1 aeAmyrLGmfylylnGl.gvpkDpekAiewyekAAeqG 37  
                  a Amy+ +m+   l+Gl g p+++++A+ w+++AAe+ 
  KKY15539.1 1049 APAMYKTAMIS--LKGLlGQPQNKREAYTWLKRAAEKA 1084
                  57******888..****88****************986 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 6.2e-06
        Sel1    1 aeAmyrLG.mfylylnGl.g.vpkDpekAiewyekAAeqGd 38  
                  ++A++ LG m++   +G  + v +D + A+ ++e+A ++G+
  KKY15539.1 1089 PHALHELGlMYE--SAGPdDaVIRDLKHARSLFEQAGKLGY 1127
                  689*****6666..6666579****************9996 PP

  == domain 5  score: 25.9 bits;  conditional E-value: 6.4e-10
        Sel1    3 AmyrLGmfylylnGl.gvpkDpekAiewyekAAeqG 37  
                  ++yrL+   +++ G  + p Dp++ i wy kAA+qG
  KKY15539.1 1130 SQYRLA--SAFESGNlDCPIDPRQSIMWYSKAAAQG 1163
                  8*****..999****66******************9 PP

  == domain 6  score: 11.8 bits;  conditional E-value: 1.7e-05
        Sel1    6 rLGmfylylnGl.gvpk.DpekAiewyekAAeqG 37  
                  +L    +yl+G  g+ +    +A+ w +kAA+ G
  KKY15539.1 1170 ALS--GWYLTGSdGILQqSDTEAYLWARKAAQSG 1201
                  444..566****7755559************987 PP

  == domain 7  score: 22.6 bits;  conditional E-value: 7e-09
        Sel1    1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38  
                  a A y++G  y+ + G gv ++ ++A +wy +AA+q++
  KKY15539.1 1203 AKAEYAMG--YFTEVGIGVSPNMDEAKKWYWRAASQNY 1238
                  689*****..777***********************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.54
# Mc/sec: 7167.64
//
Query:       KKY15540.1  [L=116]
Description: putative ubiquinol-cytochrome-c reductase assembly factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-25   89.7   0.3    1.5e-25   89.5   0.3    1.1  1  CBP4      CBP4
  ------ inclusion threshold ------
      0.015   15.6   0.6      0.023   14.9   0.6    1.3  1  DUF2683   Protein of unknown function (DUF2683)
       0.02   13.9   0.0       0.02   13.9   0.0    1.1  1  Pacs-1    PACS-1 cytosolic sorting protein


Domain annotation for each model (and alignments):
>> CBP4  CBP4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.3   2.5e-29   1.5e-25      15      94 ..      15      90 ..       1     113 [. 0.76

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 2.5e-29
        CBP4 15 gaiigtGvllfkyttPtdeeLikrlsPelrkkyeknrelRqkeqqelvkivketsksddpiWktgpikspfeknadeklk 94
                 ai ++G++l  y++Ptdee++++++P+l+k+ ++nre+R+ke++e+v+++ke sksd+piW++++++      + + ++
  KKY15540.1 15 LAISVGGPALTWYLRPTDEEIFQKFNPDLQKRSLENRERREKEFDEFVTKLKEYSKSDKPIWVVAAEEER----KRRAQA 90
                37889***********************************************************998333....222222 PP

>> DUF2683  Protein of unknown function (DUF2683)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.6   3.9e-06     0.023      44      77 ..      54      86 ..      42      87 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.9e-06
     DUF2683 44 lEaElkPefvekirnimKgeepidigdiedlrkr 77
                +E+E+  efv k+++++K+++pi +   e+ rkr
  KKY15540.1 54 REKEFD-EFVTKLKEYSKSDKPIWVVAAEEERKR 86
                566664.9******************99999997 PP

>> Pacs-1  PACS-1 cytosolic sorting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.4e-06      0.02     109     176 ..      11      77 ..       1      98 [. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.4e-06
      Pacs-1 109 ylrFlvvPlgsspvaryLgsldsrysslfldeawrdlferleaktsadaadvvtrisqYltgansvlq 176
                  l Fl + +g   +++yL   d++  + f+ +  +  +e+ e+ ++ +  + vt++++Y ++ + +  
  KKY15540.1  11 TLGFLAISVGGPALTWYLRPTDEEIFQKFNPDLQKRSLENRERREK-EFDEFVTKLKEYSKSDKPIWV 77 
                 578*********************9999999999999999998777.9***********988777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1112  (0.0620224); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 871.08
//
Query:       KKY15541.1  [L=472]
Description: putative cell wall glycosyl hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.3e-159  531.6  26.6   2.4e-159  530.7  26.6    1.4  1  Glyco_hydro_76  Glycosyl hydrolase family 76
  ------ inclusion threshold ------
       0.42    9.7  10.7      0.033   13.3   0.8    2.8  3  Glyco_hydro_88  Glycosyl Hydrolase Family 88


Domain annotation for each model (and alignments):
>> Glyco_hydro_76  Glycosyl hydrolase family 76
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  530.7  26.6  2.7e-163  2.4e-159       1     365 [.      30     413 ..      30     414 .. 0.97

  Alignments for each domain:
  == domain 1  score: 530.7 bits;  conditional E-value: 2.7e-163
                     SXHHHHHHHHHHHHHHCETTECCTCTCBSCES-GHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHCCCTCEE-SSSTTCTCSSEHHHHHHHHHH CS
  Glyco_hydro_76   1 siksaaatiakgllkyYkgnesggtpgnlpdpyywWeagalfgalidywrltgdstyndlitqallaqagenydympanqsrtegnDDqafwgla 95 
                     sik+aa+tia+g+++yY+gne+g++pgnlpdpy wWeaga+fgal+dyw++tgd+tyn+++tqall+q ge+++ymp+nqs+tegnDDq fwg+a
      KKY15541.1  30 SIKQAASTIAYGMMEYYTGNETGDVPGNLPDPYFWWEAGAMFGALVDYWYYTGDETYNNVTTQALLFQVGEDENYMPSNQSKTEGNDDQSFWGMA 124
                     79********************************************************************************************* PP

                     HHHHHHH......H--HHHHHHHHHHHHHHHHCB-SCSCCS-BBSEC..ESS--SEEEHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHH CS
  Glyco_hydro_76  96 amtaaernfpep.tdepswLalAqavfntqasrwdeetcgGGlrWqiftwnsgydyknsisngplfqlaarLarytgnetYlewAekvwdWvedv 189
                     +m+aae++fp+p +dep+wL+lAqavfntqa rwd+ tcgGGlrWqift+n+gydyknsisng +f+laarLa yt n+tY+ewA+ +wdW+e v
      KKY15541.1 125 VMSAAETKFPNPpEDEPQWLELAQAVFNTQAVRWDNATCGGGLRWQIFTFNNGYDYKNSISNGNFFNLAARLAVYTSNDTYAEWADTMWDWTEFV 219
                     *********************************************************************************************** PP

                     SCSBTTTS-B-SEEETTTCCEEEE---HHHHHHHHHHHHHHHHHHH--H.................HHHHHHHHHHHHHHHHCEEC.TTEEEEEE CS
  Glyco_hydro_76 190 gliddedwlvyDgasvednctdinklqwtYnqGtylsgaaylynaTgde.................kWldrvkgllnatlstffpd.gnilyeva 266
                     gl+ +++++++Dg+sv+dnct++n++qwtYn+Gtyl gaa +yn+  +                  +W++rv+++lnat  +f +d  n++ e+a
      KKY15541.1 220 GLM-TSSYEFFDGTSVDDNCTSLNRIQWTYNAGTYLLGAANMYNYVRNLrliekdeadslqtngssVWQQRVENILNATDVFFSDDpVNVMEEIA 313
                     **9.*****************************************944335555568899999999*************7777777********* PP

                     -TTSTTCCTTHHHHHHHHHHHHHHHH..SHHHHHHHHHHHHHHHHHHHTTTB...TTTSB-TTTTT.SSCCHHHHHHHHCCHHH........... CS
  Glyco_hydro_76 267 cepsekcnnDqrsFkgilarwlaltaqlapetadtiepllrasaeaaakscsggsdgttcglkwlk.gtwdgdaglgeqmsaleviqallveekk 360
                     cep+ +cn+DqrsFk++l+rw+a+t+++ap+t+d i ++l+asa+aaa++csggs+gt+cgl+w++ +++dg++g+geqm+aleviq++l+++++
      KKY15541.1 314 CEPNGNCNTDQRSFKAYLSRWMAATTKVAPFTHDAILTKLEASAQAAAQQCSGGSSGTACGLQWTQlSNYDGSTGVGEQMAALEVIQSNLIDTVA 408
                     *****************************************************************8688************************** PP

                     .HHHH CS
  Glyco_hydro_76 361 aplta 365
                     +p+t+
      KKY15541.1 409 GPVTN 413
                     **997 PP

>> Glyco_hydro_88  Glycosyl Hydrolase Family 88
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.8   3.7e-06     0.033      22      68 ..      58     110 ..      37     157 .. 0.75
   2 ?   -1.2   0.2     0.096   8.6e+02      30      60 ..     185     215 ..     162     221 .. 0.75
   3 ?    2.1   0.2    0.0094        84      23      48 ..     242     267 ..     229     290 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.7e-06
                     STTCCE.HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCTTS-......C CS
  Glyco_hydro_88  22 kkenewewtnGvflsglleayeatgdkeyldyakawadslideggk......t 68 
                      ++  + w+ G+++++l++++ +tgd++y +++++    ++ e+++       
      KKY15541.1  58 LPDPYFWWEAGAMFGALVDYWYYTGDETYNNVTTQALLFQVGEDENympsnqS 110
                     4555566***************************9988888888886555552 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.096
                     HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH CS
  Glyco_hydro_88  30 tnGvflsglleayeatgdkeyldyakawads 60 
                      nG f++  ++++ +t +++y ++a+++ d+
      KKY15541.1 185 SNGNFFNLAARLAVYTSNDTYAEWADTMWDW 215
                     3677888888899999999999999886665 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.0094
                     TTCCE.HHHHHHHHHHHHHHHHH--H CS
  Glyco_hydro_88  23 kenewewtnGvflsglleayeatgdk 48 
                     ++ +w ++ G++l g +++y++  + 
      KKY15541.1 242 NRIQWTYNAGTYLLGAANMYNYVRNL 267
                     5679****************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.51
# Mc/sec: 2797.19
//
Query:       KKY15542.1  [L=117]
Description: putative synaptobrevin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-33  114.5   0.6    1.7e-33  114.3   0.6    1.0  1  Synaptobrevin  Synaptobrevin
  ------ inclusion threshold ------
      0.026   15.2   0.0      0.033   14.8   0.0    1.2  1  AKNA           AT-hook-containing transcription factor
      0.034   13.7   0.1      0.051   13.1   0.1    1.3  1  Fzo_mitofusin  fzo-like conserved region
      0.043   13.9   0.0      0.051   13.7   0.0    1.0  1  MCU            Mitochondrial calcium uniporter
       0.14   12.1   0.0       0.15   11.9   0.0    1.1  1  EMP24_GP25L    emp24/gp25L/p24 family/GOLD
        0.3   11.1   2.6       0.45   10.5   2.6    1.2  1  DUF1035        Protein of unknown function (DUF1035)


Domain annotation for each model (and alignments):
>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   0.6   5.6e-37   1.7e-33       2      88 ..      26     112 ..      25     113 .. 0.97

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 5.6e-37
                    XXHHHHHHHHHHCCCCHHCCHHHHCHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin   2 ndklakikaevdevkdimkeNidkvlergekldeLvdktenLqssaqqFkkqarklkrkmwwknmkliiililvvlililiiiivic 88 
                    n+++a+++a++d+++++m+eNi+kv +rge+ld+L+dkt+nL+ saq F++ a++++++mwwk+mk++++li+ +++l+++ii++++
     KKY15542.1  26 NTRTAALQAQIDDTVGVMRENINKVSQRGERLDSLQDKTDNLAHSAQGFRRGANRVRKQMWWKDMKMRMCLIVGIIVLLIVIIVPAV 112
                    678999*****************************************************************************9876 PP

>> AKNA  AT-hook-containing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.1e-05     0.033      45      74 ..      47      76 ..      24      91 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-05
        AKNA 45 eaeIyqlgqrleeLkdqtdqlkqkveefsk 74
                  +++q g+rl+ L+d+td+l    + f++
  KKY15542.1 47 INKVSQRGERLDSLQDKTDNLAHSAQGFRR 76
                5799*****************999998875 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.7e-05     0.051     103     155 ..      29      81 ..      26      86 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.7e-05
  Fzo_mitofusin 103 farlcqqvdetekeleeeikelekeiekleevqkkakllrnkaslleseLekf 155
                     a l++q+d t   ++e+i++++++ e+l+++q k   l + a+ +++  ++ 
     KKY15542.1  29 TAALQAQIDDTVGVMRENINKVSQRGERLDSLQDKTDNLAHSAQGFRRGANRV 81 
                    6789**************************************99888766665 PP

>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.7e-05     0.051      34     106 ..      28     101 ..      16     105 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.7e-05
                 XXXXXXXXXX-SSSSSSTSSSSSHHHHHHHHHHHHH-SHHHHHHHHTCCCGGGCHHHHGGGHHHH.HHHHTHHH CS
         MCU  34 rvkqlvkalesalnveeeqlkkereleekleelreelepleekkeeidekAerrtrrllwagLal.lavqlgil 106
                 r+ +l +++ +++ v +e+ +k+++  e+l++l+++ ++l +  + +++ A+r +++++w  + + +++ +gi+
  KKY15542.1  28 RTAALQAQIDDTVGVMRENINKVSQRGERLDSLQDKTDNLAHSAQGFRRGANRVRKQMWWKDMKMrMCLIVGII 101
                 5566677888888999999*****************************************99976355556655 PP

>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.2e-05      0.15     111     174 ..      48     111 ..      22     116 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.2e-05
  EMP24_GP25L 111 ekletleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavlqv 174
                  +k+++  ++l+ l++k+d++ +  +  r+  +r r+++    +++  + i+ ++vl++v +++ 
   KKY15542.1  48 NKVSQRGERLDSLQDKTDNLAHSAQGFRRGANRVRKQMWWKDMKMRMCLIVGIIVLLIVIIVPA 111
                  566777789**************************************************99876 PP

>> DUF1035  Protein of unknown function (DUF1035)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.6   0.00015      0.45      49      68 ..      97     116 ..      92     117 .] 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00015
     DUF1035  49 LVplfyllvliivPavvaYk 68 
                 +V +  ll++iivPavva k
  KKY15542.1  97 IVGIIVLLIVIIVPAVVATK 116
                 5788899**********966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1262  (0.0703888); expected 358.6 (0.02)
Passed bias filter:                      820  (0.045736); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 827.63
//
Query:       KKY15543.1  [L=894]
Description: putative acetylglutamate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-52  177.8   0.9    5.8e-52  175.8   0.3    2.0  2  NAT             NAT, N-acetyltransferase, of N-acetylglutamat
      1e-31  109.9   0.0    2.7e-31  108.5   0.0    1.8  1  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai
    4.5e-31  108.3   0.3    1.4e-30  106.7   0.0    1.9  2  AA_kinase       Amino acid kinase family
  ------ inclusion threshold ------
      0.041   14.0   0.0       0.11   12.7   0.0    1.8  1  DapB_N          Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> NAT  NAT, N-acetyltransferase, of N-acetylglutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.14   6.2e+02      12      66 ..      43      95 ..      35     121 .. 0.60
   2 !  175.8   0.3   1.3e-55   5.8e-52       1     168 [.     326     494 ..     326     496 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.14
                SSEEEE---XEEEESSCCCSSXCCHHHHHHTTSTTTSSXHHHHHHH...HHTSXEEEE CS
         NAT 12 agtlirrGlkvitvkslkelidlekLksliedsfkrkldvkdYldr...lkgkiakiy 66
                 +tl rr+++  +++s   +  + +L s i +    k +v++Yl++   ++++++ ++
  KKY15543.1 43 TTTLTRRSYHPSESSSSTRS-TVVQLLSNIGS----KREVQQYLSHfssVSSQQFAVI 95
                57888998888888877777.44444444444....4456666555000445555544 PP

  == domain 2  score: 175.8 bits;  conditional E-value: 1.3e-55
                 GHHHHHHSSSTSSEEEE---XEEEESSCCCSSXCCHHHHHHTTST...TTSSXHHHHHHHHHTSXEEEEEETTXSEEEEE.....EXSSSSXEEEEEEE CS
         NAT   1 dlqkelftdsgagtlirrGlkvitvkslkelidlekLksliedsf...krkldvkdYldrlkgkiakiyiaedyeglAivtwedpkeekevayLdkFav 96 
                 dlqkelftdsgagtlirrG kv+t+ s++++ d+++Lk+++ +++   ++   v++Y+  lk++++k+y++e++e+ Aiv+   + +++++a+L ++++
  KKY15543.1 326 DLQKELFTDSGAGTLIRRGNKVHTAASIEKFSDIDALKKVLVRDReglDAVAIVDRYVAWLKNREFKAYFDEPMEAFAIVLP--ASQDTSIAQLATLTI 422
                 79*******************************************7777888899*************************98..677788********* PP

                 XHHHHHTTHHHHHHHHHHHHXSSEEEEEETTXTTHHHHHHCXSEEEEETTEEEEEESXXXHHHHHHHHHHHH CS
         NAT  97 lkssqgsgvsdvvfkalkkdfpkLvWrsrednpvnkWyfersdGslkksqwvlfWyGlkdlkeveelvesfk 168
                 +ks+++++v+d+vf+++kkd+pkL+W+++ed+++++W+f+++dGsl+++++vlfWyG+++ +ev +l+++f 
  KKY15543.1 423 TKSGWLTNVADNVFASIKKDHPKLMWTVKEDDENLTWFFDKADGSLSREGEVLFWYGIDSAEEVTQLMSEFG 494
                 ********************************************************************9986 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5   0.0   6.1e-35   2.7e-31       1     121 []     581     704 ..     581     704 .. 0.94

  Alignments for each domain:
  == domain 1  score: 108.5 bits;  conditional E-value: 6.1e-35
                     EEEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEE.GGGGGCTT-SEEEE-SCHHHHHHHHHHH..HHTTSE CS
  Semialdhyde_dh   1 kvaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkved.vdeeelkevdivflalpagvskelapkl..aeagvk 92 
                     +va++Ga+Gy+Gq+l+ l+++hp+++l  ++s++  aG+kl+ ++k   ++++l+v+d   +ee  ++d++++alp+gv+k++++++  + ++ +
      KKY15543.1 581 RVALIGARGYTGQALIDLISKHPHLDLRNVSSREL-AGQKLKGYNKREITYENLSVDDvKRMEEAGQIDCWVMALPNGVCKPFVDAIngVGKNSV 674
                     79***************************999999.**********************9999999**********************5555555* PP

                     EEESSSTTTTSTTSEBE-HHH.HGGGGGGH CS
  Semialdhyde_dh  93 viDlssdfRlkddavyvlpev.nreaikka 121
                     ++Dls+d+R+++ ++y+lpe+ nr+ i++a
      KKY15543.1 675 IVDLSADYRFDNGWTYGLPELvNRSSIAQA 704
                     ********************8789999875 PP

>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.7   0.0   3.1e-34   1.4e-30       3     229 ..      93     309 ..      91     316 .. 0.94
   2 ?   -2.3   0.1      0.62   2.8e+03      28      63 ..     816     850 ..     808     882 .. 0.71

  Alignments for each domain:
  == domain 1  score: 106.7 bits;  conditional E-value: 3.1e-34
                 EEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHTTHGEE CS
   AA_kinase   3 vVvKlGGssltdkeeaslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaaglpav 101
                  V+K+GG++lt  e   l+ l   +a l+  g  +vvVhG+g++ +++++  sg+++++++ g+r+t+ +++ +a+ ++ +  + rlv++l ++g++a+
  KKY15543.1  93 AVIKVGGAILT--EH--LETLSSALAFLNHVGLYPVVVHGAGPQLNKIIED-SGVEPQFED-GIRVTDPKTLGIAR-ALFLEENARLVEELERQGVRAR 184
                 7**********..44..77888888888888999*****************.*********.***********999.********************** PP

                 EE-GGGTCEECCCE...HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCCTTCEC CS
   AA_kinase 102 glsaaaldateagr.degsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydadpkkvpdarll 199
                 ++++  ++a   ++ +++ +g+v +vd++ ie  ++ag +p+lt ++  ++eg+++++++D++a  lA al++ k+++l++  G+++ d k+      +
  KKY15543.1 185 PITSGVFTADYLDKeKYNLVGKVNKVDKRPIEAAINAGCLPILTSMA-ESTEGQILNVNADVAAGELARALQPLKIVYLSEKGGLFNGDTKEK-----I 277
                 *************9*******************************97.88888989********************************98665.....* PP

                 CEEEHHHCHH..CSSS.TTTHHHHCHHHHHHH CS
   AA_kinase 200 peisvdeaee..saselatgGmkvkhpaalaa 229
                 + i+ de  +   ++ +++ G++ k++++ ++
  KKY15543.1 278 SAINLDEEYDhlMTQWWVRHGTRLKIKEMKEL 309
                 *******9999999***********9998776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.62
                 HHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC CS
   AA_kinase  28 aalkesgnklvvVhGggsftdgllalksglssgela 63 
                  + + +g+kl+ ++G  + + +++ + +g++ g+ a
  KKY15543.1 816 YQERYAGEKLIKIVGEAPLVKHIAGR-HGVEVGGFA 850
                 34446779999999999999999999.999988776 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.4e-05      0.11       2      51 ..     581     627 ..     580     679 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.4e-05
                 EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS CS
      DapB_N   2 kvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglg 51 
                 +va++Ga+G  G++++++++++++l l  + +r+     g+++    +++
  KKY15543.1 581 RVALIGARGYTGQALIDLISKHPHLDLRNVSSREL---AGQKLKGYNKRE 627
                 89*************************99988864...444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (894 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 5852.29
//
Query:       KKY15544.1  [L=683]
Description: putative rad21 rec8 n terminal domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-30  105.0   0.0    4.1e-30  104.2   0.0    1.4  1  Rad21_Rec8_N  N terminus of Rad21 / Rec8 like protein
    5.7e-06   25.5   0.0    1.2e-05   24.5   0.0    1.4  1  Rad21_Rec8    Conserved region of Rad21 / Rec8 like protein
  ------ inclusion threshold ------
        4.9    7.2   6.3       0.39   10.8   0.8    1.8  2  Transformer   Fruit fly transformer protein


Domain annotation for each model (and alignments):
>> Rad21_Rec8_N  N terminus of Rad21 / Rec8 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   0.0   6.8e-34   4.1e-30       1      93 [.       1      99 [.       1     114 [. 0.93

  Alignments for each domain:
  == domain 1  score: 104.2 bits;  conditional E-value: 6.8e-34
  Rad21_Rec8_N  1 Mfysqellsk.kgplakvWlaAtl.ek....klskkeilevniekaveeIlnpeaplaLrlsgqLllGvvriyskkvkyllsDceealekikkafksik 93
                  Mfys+e+l++ k+++a++W++Atl +k    k+++k+il+v++++a+++I+ +++plaLrl+g+Ll+Gv+++ys+++ y+lsD + +++++k a++ ik
    KKY15544.1  1 MFYSHEILTSpKHGVATIWVVATLgSKsgfkKITRKAILDVDVPSACNTIVGQDEPLALRLQGSLLYGVSKVYSQQCGYVLSDTQAIRDRMKYAISLIK 99
                  9***********************8889****************************************************************9988665 PP

>> Rad21_Rec8  Conserved region of Rad21 / Rec8 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0     2e-09   1.2e-05      11      43 ..     639     672 ..     631     681 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 2e-09
                 --.-----HHHHHHHHHHHHHHHHTSEEEEESST CS
  Rad21_Rec8  11 lp.agktRkeAArlFyelLvLatkgvIkvkQeaP 43 
                 lp +  ++ +AA+ F ++L+Latkg+I v+Q++ 
  KKY15544.1 639 LPpNSHSKDVAAQGFLHILTLATKGLIVVTQDEE 672
                 5535667899*********************985 PP

>> Transformer  Fruit fly transformer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.5       0.6   3.6e+03      64      81 ..     310     327 ..     290     374 .. 0.55
   2 ?   10.8   0.8   6.6e-05      0.39      56      84 ..     414     440 ..     406     457 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.6
  Transformer  64 sqsaeresrqrrrrsrsr 81 
                    s+  e+ qrr+r  + 
   KKY15544.1 310 ETSSTVEAPQRRQRGPAP 327
                  344444555555433332 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 6.6e-05
  Transformer  56 rrtrsrsrsqsaeresrqrrrrsrsrsrr 84 
                   r r+ srs s+e esrq+r   rs++r+
   KKY15544.1 414 SRKRALSRSVSSEEESRQKR--MRSVERQ 440
                  478999*********99988..6777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 4122.91
//
Query:       KKY15545.1  [L=518]
Description: putative purine-cytosine permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-32  112.6  30.1    2.5e-32  112.2  30.1    1.1  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami
  ------ inclusion threshold ------
        4.9    5.3   7.6          8    4.6   7.6    1.2  1  DUF2070         Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2  30.1   2.8e-36   2.5e-32       2     420 ..      62     471 ..      61     487 .. 0.85

  Alignments for each domain:
  == domain 1  score: 112.2 bits;  conditional E-value: 2.8e-36
  Transp_cyt_pur   2 vpeeeRt.wktlnlfsiWlganlnintwvigalg.lalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrv 94 
                     +pe+ Rt   +++lf+++ + n+ ++t+++g+lg + +gL+ww+s+l+ +++n+igai+ al++  G+k+Gl+++ + R+sfG + + l +++ +
      KKY15545.1  62 IPEALRTdQHPRDLFTLFTSVNIGTATLAFGTLGpVLFGLGWWDSFLALLFFNIIGAIPPALAATLGPKTGLRTMCMPRYSFGWWPAKLVAFINL 156
                     67755551579***********************9************************************************887766666669 PP

  Transp_cyt_pur  95 viaivwfgvqawiGsealllmlgkifgkwleiggailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaegGp 189
                       +i+w  v++++G++ l+ + +        ++     +++ +l+  + +wv+  ++ + +v++++++f i +l+  ++  gf+     ++ +G+
      KKY15545.1 157 TNQIGWAMVNTIAGADILYDVGNTK------LP-----LTVAVLIIGLCAWVI-GLFGYQWVHRFERYFWIVILICMIILAGFGGKHFHNIPWGS 239
                     9999999999999999888654444......33.....888888888999998.5689**********************9************98 PP

  Transp_cyt_pur 190 vldkavklgkselflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakfdet... 281
                       ++ + +    +f ++++g++ ++at+++   D+ +y++++ +  k+++ ++++lf + ++i  l+aa+  ++  ++a ++      +d+    
      KKY15545.1 240 GPSETSGIL---SFGTSIIGFQISWATIAA---DYGVYMRETLKPWKVFTWTFFGLFLSQFFIECLGAALMLTVNVDPAFAAA-----YDKAgfg 323
                     888776666...799***************...****************************************9999999888.....7777777 PP

  Transp_cyt_pur 282 ................agvllililvalaqlgvnisanllsagldlaallP..kkinikrgsli..aavialvivpwkllssssklftaflslla 356
                                     +g ++ +i +a++ ++v i an++s gl ++ +     k+++   s+   aa +a +i+  ++l+++ +    fl ++a
      KKY15545.1 324 gltgqvfegygsgvrgFGKFIQVI-LAFSVVSVVI-ANIYSLGLNIQIISSklLKVPRFLWSVLggAAFLAAAIAGRDHLEEAME---DFLNVIA 413
                     889999*****9988777666655.5555555544.799**********996666666655555335667777888888888888...9****** PP

  Transp_cyt_pur 357 vflspvagviiadyfvvrrgylklaalytrrrgsaYwyrkgvNwravaayivGiaaglvgvags 420
                     + l+p+ ++++ + +v rrgy    +  ++ +  +Y        +a++ +++G+ ++++ ++  
      KKY15545.1 414 YWLTPFLAILCMEHLVWRRGYQYDLTAWDDPSKLPYG------IAALVTFAIGTTLAILCMSQT 471
                     **********************999999988888888......899999999999999886643 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   7.6   0.00089         8      16     211 ..     186     407 ..     174     416 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.00089
     DUF2070  16 vsllliillalligllaflssk....lfgillfglpalvaflltlpvlrilggrltykrslflalltelivviisllaillsall........qalvll 102
                 v++l+i l+a +igl  +   +    +f i++++  +++a++  +++ +i  g  +++ s +l++ t +i + is++ i++ + +        +  v+ 
  KKY15545.1 186 VAVLIIGLCAWVIGLFGYQWVHrferYFWIVILICMIILAGFGGKHFHNIPWGSGPSETSGILSFGTSIIGFQISWATIAADYGVymretlkpW-KVFT 283
                 566667777777777776666697777777777777**************999999*************************9988888888642.2333 PP

     DUF2070 103 alvls.lalvfalrllvlvavsdesllkavlpaliqpllailllvly.........fspesfllllllslifalavylfivvvdrplkrnlgvsaldll 191
                  ++++ + + f++  l   ++   ++  a + a     ++ l+ +++         f  +++ ++l++s++ ++++ ++   +++++ ++  +++ ++l
  KKY15545.1 284 WTFFGlFLSQFFIECLGAALMLTVNVDPAFAAAYDKAGFGGLTGQVFegygsgvrgF-GKFIQVILAFSVVSVVIANIYSLGLNIQIISSKLLKVPRFL 381
                 333334667899999999999999******999*9******************9863.56788889999***********9999999999999999998 PP

     DUF2070 192 ......saFlahilegskelEeffee 211
                        aFla+ + g++ lEe +e+
  KKY15545.1 382 wsvlggAAFLAAAIAGRDHLEEAMED 407
                 55555568999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3872.54
//
Query:       KKY15546.1  [L=275]
Description: putative aromatic ring-opening dioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-32  110.8   0.0    7.1e-32  110.6   0.0    1.0  1  LigB      Catalytic LigB subunit of aromatic ring-opening dio


Domain annotation for each model (and alignments):
>> LigB  Catalytic LigB subunit of aromatic ring-opening dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.0   3.9e-36   7.1e-32       2     251 ..       8     250 ..       7     268 .. 0.87

  Alignments for each domain:
  == domain 1  score: 110.6 bits;  conditional E-value: 3.9e-36
        LigB   2 alllsHvppilaavdgkeqealrekvikgyesireriaek.sPdtiivvsphhltdvnpvfvlgvaeefeaiddfg...kflprleyelkgnpeLaeki 96 
                 +++ sH+ p ++ +    ++    ++ + +++++++i  + +P +++v+s+h+   +n v  +++ae ++ i+d++      +r++y+  g+p La+k+
  KKY15546.1   8 VYFFSHGGPNVMFET---EH----PAYGKLAALGKEITTNvKPSAVVVFSAHWQAGKNHV-EVNTAEMEPLIYDYYgfpAEYYRVQYPNVGSPALAQKV 98 
                 688899888877777...22....345668999*******9**************88877.6777888********999899***************** PP

        LigB  97 aealkksgidlavesnsmklDHGtlvPLelmlp...deakvpvikvslntvaypllsferlykLGeAlrkaveeldknvlilgsGglsHqlegdeaaka 192
                 +   k++gi+++    +++lDHG++  ++  +    + ++vp ++vsl +      ++ ++ kLG+Al++++   d+n++i+ sG + H+l++++ a  
  KKY15546.1  99 IGMFKEAGIEAKG--VKRGLDHGVFAAFRCAFDperNPLNVPIVQVSLFG----TEDPSQHIKLGRALEPLR---DENIVIIVSGMAVHNLRDMRFALG 188
                 **********866..89****************66656778888888887....89****************...**********************99 PP

        LigB 193 daqtlllneefdeelldllkegrveelckmsk..eelsaaaghe.eeelvplvvalGalsgd 251
                   q+l+ +  fd  l ++ + ++ +  ++m k  + ++a+++h+  e+l p+++  Ga+++d
  KKY15546.1 189 SRQPLPYAISFDAALKEAVETDPEKRDDAMVKllKRPDARQAHPsFEHLLPIHIGVGAAGSD 250
                 999******************8776655554422799*******99**************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1814.05
//
Query:       KKY15547.1  [L=94]
Description: putative nadh-ubiquinone oxidoreductase 105 kda subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-13   48.2   0.0    9.7e-13   47.8   0.0    1.2  1  L51_S25_CI-B8  Mitochondrial ribosomal protein L51 / S25 / CI


Domain annotation for each model (and alignments):
>> L51_S25_CI-B8  Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   5.4e-17   9.7e-13       1      51 [.      28      78 ..      28      79 .. 0.95

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 5.4e-17
                   HHHHHTTTTHHHHTT-TTSEEEEEESS-SS-EEEEE-SS--B--EE-SS-- CS
  L51_S25_CI-B8  1 aRkFwrknLprlkykNPavpivvrrrsgdgPallaiYfngrektidlknkn 51
                   +R F+++ +p++k+ NP +pi+ r+++  +P+++a+Y+ g+ek+  l +++
     KKY15547.1 28 MRTFLKRAYPTMKKNNPYIPIMMREAQDVEPRIWARYGYGKEKSEPLSGLT 78
                   8******************************************99988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 627.05
//
Query:       KKY15548.1  [L=177]
Description: hypothetical protein UCRPC4_g06288 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-45  154.1   0.9    1.7e-45  153.7   0.9    1.2  1  MPC       Mitochondrial pyruvate carriers


Domain annotation for each model (and alignments):
>> MPC  Mitochondrial pyruvate carriers
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.7   0.9   9.5e-50   1.7e-45       2     106 ..      50     154 ..      49     158 .. 0.96

  Alignments for each domain:
  == domain 1  score: 153.7 bits;  conditional E-value: 9.5e-50
         MPC   2 lkrflnsetgkktvhFWaPvlkwglviaglsDlkrpaekiSltqnlaLlatgliwtryslvikPkNyllaavnfvlelvglvqvsRilkyrlskkdekk 100
                 +kr+++se+g ktvhFWaPv+kw+lv+ag+ D+ rpaek+Sltqn+aL+atg+iwtr++++i+PkN+llaavn++l++vg+vqv+Ril +++s++ +++
  KKY15548.1  50 FKRLWTSEVGVKTVHFWAPVMKWALVVAGIGDFFRPAEKLSLTQNAALTATGSIWTRWCFIIRPKNLLLAAVNAALACVGVVQVTRILLWQRSQSGSTE 148
                 89*********************************************************************************************9999 PP

         MPC 101 eakkei 106
                 +a+k++
  KKY15548.1 149 AAVKDL 154
                 887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1250.11
//
Query:       KKY15549.1  [L=70]
Description: hypothetical protein UCRPC4_g06289 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.069   13.8   0.0       0.09   13.4   0.0    1.2  1  HTH_32    Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     5e-06      0.09      23      62 ..       5      50 ..       2      56 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5e-06
      HTH_32 23 rgrprklsdevrariiallreep.........rWsprqlaarlaeregv 62
                +g p  +++e+r++i++ +++e          +W + +la+r ++++ +
  KKY15549.1  5 KGEP--TNPELREKIKEQVKNEEkgggkgswsAWKAGELARRYEAEG-G 50
                4566..9************776689****999999999999984443.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.30s 00:00:00.71 Elapsed: 00:00:00.46
# Mc/sec: 457.32
//
Query:       KKY15550.1  [L=90]
Description: hypothetical protein UCRPC4_g06290 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       878  (0.0489709); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.32s 00:00:00.80 Elapsed: 00:00:00.50
# Mc/sec: 543.37
//
Query:       KKY15551.1  [L=507]
Description: putative 2-methylcitrate dehydratase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-140  468.4   0.0   2.2e-140  468.1   0.0    1.0  1  MmgE_PrpD  MmgE/PrpD family


Domain annotation for each model (and alignments):
>> MmgE_PrpD  MmgE/PrpD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  468.1   0.0  1.2e-144  2.2e-140       2     430 ..      29     479 ..      28     487 .. 0.96

  Alignments for each domain:
  == domain 1  score: 468.1 bits;  conditional E-value: 1.2e-144
                 HHHHHHHHH-----H..HHHHHHHHHHHHHHHHHHHHTT-HHHHTT-S.SSTT-B-TT-EE-TTSS-EE-HHHHHHHHHHHHHCTS-S-BEESSSEE-G CS
   MmgE_PrpD   2 eqlaefvaelryddlpeevverakrlilDtlGvalaglrepavkkale.avkgtggpggatvigtgerlspvkAAfvnGaaihalDfdDthlaaelhhp 99 
                 +++a++++++++d+    ++e+a+ ++lDtlG++l++l+++++k++l+ +v+gt++p+g++v+gt+++l+p+++Af++Ga+i++lDf+Dt+laae++hp
  KKY15551.1  29 RDMASYIHNYKVDSP--LAFETARFVLLDTLGCGLEALKFDQCKNLLGpIVEGTTVPNGTKVPGTPYQLDPATGAFNIGAMIRWLDFNDTWLAAEWGHP 125
                 799************..********************************************************************************** PP

                 GGGHHHHHHHHHHHHHH..............B.HHHHHHHHHHHHHHHHHCCC--SCCCT.B-THHHHHHHHHHHHHHHTT--HHHHHHHHHHHHCT-B CS
   MmgE_PrpD 100 sdvlpaalAvAealgas..............g.kdlLtAivvGyEvqgrlglalsfnhygfhdtvtlgtfgaaaaaakLlgLdaeqianAlgiaatqaa 183
                 sd+l+a+lAv++++ ++              + kd+L+++++++E qg ++l++ fn++g +d+v+l+++++aa+++k+lg++++q+++ ++++++++a
  KKY15551.1 126 SDNLGAILAVSDWIARTnrnsdkkivdgkipKiKDVLEGMIKAHELQGVMALENAFNKVG-LDHVVLVKLASAAVVSKILGMNETQTRDVISHCWVDGA 223
                 *******************************77***************************.************************************** PP

                 -BSGGGSTTT--CHH.CHHHHHHHHHHHHHHHHHTT---.TTTTT-TTTSHHHHHSTT-----S.S-SS...SHHHHC-B---.SSS-CCCHHHHHHHH CS
   MmgE_PrpD 184 glrqyrhagtkskkl.waaGdAarnGveaallAkrGftG.psdilegewGflavlsggkdlelevkplgegesweienvlfKp.ypaerhthaaidaal 279
                 +lr+yrh++++++++ waaGdA++++v+ +l++ +G++G ++ + +  wGf++v+++g++++++ +++    s+++envlfK  ypae+h+++ ++aa 
  KKY15551.1 224 ALRTYRHSPNTMSRKsWAAGDACQKAVNICLRVLKGEKGmATILSAPVWGFYDVMFKGEKFKFQ-RDYS---SYVMENVLFKVsYPAEFHSQTGVEAAA 318
                 ***************************************5555556889***************.9999...*************************** PP

                 HHHHHHCCT...CCCEEEEEEEE-HHHHHHC---S.---SHHHHCT-CCHHHHHHHHCS---CCCCSCCC..CTSCHHCCHHCCEEEEE-HHHHHHH.. CS
   MmgE_PrpD 280 klraelklk...pddIesieirtseaalriigkkg.ppenradadhSlqyvvAvalldgrvtledfeder..ladpevqaLrekvevvedpeltady.. 370
                 k+++ lk +   ++dI++i+ rt+ea++rii+k+  p++n ad+dh++qy++Av+l++gr+++ d+ d++  +++p v +Lr+++++ved+++t+dy  
  KKY15551.1 319 KIHEALKARgksAADIKEITNRTHEACIRIIDKQFkPLDNFADRDHCVQYMMAVMLVFGRLEAGDYADDSeaANSPLVEDLRKRITCVEDTKFTQDYhd 417
                 ********9*************************99******************************998888999**********************65 PP

                 TTT---...EEEEETTS-B---EEESS-TTS.GGHHHHHHHHHHHHHHHHHCCS-HHHHHHHHH CS
   MmgE_PrpD 371 pekrsi...vvvvlkdggrtleerveypkGh.prnplsreeleeKfrrlaegvlseeeaereei 430
                  + r i   ++v+l+dg++++e+ ve+p+Gh +r+++  + +++K++r++e+++++++  +++ 
  KKY15551.1 418 SSLRTIpnaLTVTLNDGEVLEEVVVEAPLGHkFRRQEAYPHILAKYKRHIEPHYGAHK--VKQL 479
                 445555999**********************************************444..3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.51
# Mc/sec: 2968.69
//
Query:       KKY15552.1  [L=1105]
Description: putative mrna-nucleus export atpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.3e-48  162.4   0.0    1.6e-25   90.2   0.0    4.1  2  ABC_tran        ABC transporter
    9.2e-16   58.5   0.2    8.9e-05   22.4   0.0    4.4  4  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    2.6e-11   43.4   0.5     0.0062   16.0   0.0    4.5  3  SMC_N           RecF/RecN/SMC N terminal domain
    8.9e-10   38.3   0.1    1.8e-09   37.3   0.1    1.6  1  Chromo          Chromo (CHRromatin Organisation MOdifier) dom
    1.1e-07   32.5   0.1      0.012   16.2   0.0    2.7  2  AAA_23          AAA domain
    9.4e-07   28.9   0.3      0.028   14.5   0.0    3.1  2  MMR_HSR1        50S ribosome-binding GTPase
    1.5e-06   28.2   0.2      0.012   15.5   0.1    2.6  2  RsgA_GTPase     RsgA GTPase
    2.6e-06   27.1   1.0      0.033   13.9   0.4    2.6  2  AAA_29          P-loop containing region of AAA domain
    0.00066   20.0   0.0        1.1    9.5   0.0    3.0  2  AAA_22          AAA domain
     0.0011   18.8   1.1        1.2    8.8   0.4    2.5  2  AAA_15          AAA ATPase domain
     0.0018   18.5   0.0      0.083   13.1   0.0    2.5  2  AAA_28          AAA domain
     0.0028   17.6   0.7        0.3   11.0   0.0    2.6  2  NACHT           NACHT domain
     0.0039   17.6   0.1        2.7    8.4   0.0    2.7  2  RNA_helicase    RNA helicase
     0.0046   17.1   4.5       0.19   11.8   0.2    3.2  3  DUF87           Helicase HerA, central domain
     0.0071   15.4   0.6        1.8    7.5   0.1    2.4  2  MeaB            Methylmalonyl Co-A mutase-associated GTPase M
  ------ inclusion threshold ------
      0.012   14.3   0.1        1.1    7.8   0.0    2.3  2  AAA_13          AAA domain
      0.014   15.6   0.0        9.3    6.6   0.0    3.4  2  SbcCD_C         Putative exonuclease SbcCD, C subunit
      0.021   15.4   0.1        9.5    6.8   0.0    3.1  2  AAA_18          AAA domain
      0.025   14.4   0.1         10    5.9   0.0    2.4  2  MukB            MukB N-terminal
      0.032   14.3   0.0        2.4    8.2   0.0    2.7  2  Dynamin_N       Dynamin family
      0.035   13.8   1.9        6.8    6.4   0.1    3.2  3  AAA_30          AAA domain
      0.041   14.1   0.0          6    7.0   0.0    2.9  2  AAA_33          AAA domain
      0.043   13.4   0.6        7.9    6.0   0.0    2.8  3  AAA_27          AAA domain
      0.063   13.0   0.6        4.2    7.1   0.1    2.5  2  AAA_24          AAA domain
      0.066   12.4   0.4        2.7    7.1   0.0    2.3  2  DUF815          Protein of unknown function (DUF815)
      0.069   12.9   0.1        3.6    7.3   0.0    2.5  2  PduV-EutP       Ethanolamine utilisation - propanediol utilis
      0.078   13.2   0.1         20    5.4   0.0    2.7  2  Roc             Ras of Complex, Roc, domain of DAPkinase
      0.086   12.1   0.1         14    4.9   0.0    2.4  2  Septin          Septin
      0.089   13.2   0.1         10    6.5   0.0    3.2  2  AAA             ATPase family associated with various cellula
       0.11   11.7   1.1        4.8    6.4   0.1    2.9  3  Zeta_toxin      Zeta toxin
       0.13   12.1   0.0         25    4.7   0.0    2.4  2  Ploopntkinase3  P-loop Nucleotide Kinase3
       0.27   10.8   5.3       0.16   11.5   2.4    1.9  2  SR-25           Nuclear RNA-splicing-associated protein
       0.33    8.4   1.8          4    4.8   0.1    2.1  2  DUF3584         Protein of unknown function (DUF3584)
        2.1    8.1   5.0         54    3.5   0.0    3.8  4  CLP1_P          mRNA cleavage and polyadenylation factor CLP1


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0   1.4e-20   7.2e-18       3     137 .]     494     623 ..     492     623 .. 0.75
   2 !   90.2   0.0   3.1e-28   1.6e-25       2     137 .]     737     968 ..     736     968 .. 0.86

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 1.4e-20
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHHTCHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.........esdeeiekalskl 92 
                 +  l l +g+++++ G+nGaGKStL++ +a+     eG    d++            +  ++++++  + e+t+ e          + +e+i+++ls++
  KKY15552.1 494 HTRLRLLKGHRYGLCGRNGAGKSTLMRSIANGKL--EGFP--DQNT----------LKTCFVEHNQGEDAEITILEFvakdpyiakKGTERISEVLSEF 578
                 56788999*********************97653..3332..2222..........22233333334444444444444444444467899******** PP

                 TTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  93 glkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 g ++ +d +++++  sLSgG+k ++alara+l ++++lllDEpt+
  KKY15552.1 579 GFTDGPDGRQNHKVGSLSGGWKMKLALARAMLLDADVLLLDEPTN 623
                 **********9999******************************8 PP

  == domain 2  score: 90.2 bits;  conditional E-value: 3.1e-28
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE.....................EETTCEGGG........B-HHHCCHCEEEE-SS--S- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxx........xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGei.....................lldgkdlke........qeleslrkeigvlpqepqlf 71 
                  + s+ l+ ++++ai+G nGaGKStL+kll+g++ p+ G++                     +l++++ ++        +++e+l k+ +vl+ e++ +
  KKY15552.1 737 MDTSVALSLSSRLAIIGGNGAGKSTLIKLLTGEVIPQTGKVekhpnlrigyikqhalehvemHLEKTPNQYlqwryangDDREVLMKQTRVLTDEDKAQ 835
                 578999***********************************8888888888888888888777777776667777777788888888888888885555 PP

                 TTSBHHHH...........................................................HHHTC........HHHHHHHSTTGGTTCBGES CS
                 xxxxxxxx...........................................................xxxxx........xxxxxxxxxxxxxxxxxxx RF
    ABC_tran  72 peltvren...........................................................esdee........iekalsklglkelkdtvvk 103
                  e+ v                                                              e+++e        ++ + +++++++l+ ++++
  KKY15552.1 836 MEKPVD-LgdgrgprrienlmgrqkykktfqyevkwvgllpkhntmvsretlldwgfqkliqefddhEASREglgyrilePKVISKHFEDVGLDPEIAN 933
                 555433.2477***********************************99999999999999998887633333777777779999999999999999998 PP

                 TTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 104 ssp.ssLSgGqkqrvalarallkkpkllllDEpta 137
                 +++ s LSgGqk++v+la a++++p ll+lDEpt+
  KKY15552.1 934 HNQiSGLSGGQKVKVVLAGAMWNNPHLLVLDEPTN 968
                 8889******************************8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   0.00063      0.33       3      20 ..     506     523 ..     505     538 .. 0.81
   2 !   22.4   0.0   1.7e-07   8.9e-05     219     303 .]     571     656 ..     525     656 .. 0.76
   3 !   14.0   0.0   6.1e-05     0.032       3      20 ..     750     767 ..     749     837 .. 0.90
   4 ?    6.1   0.0     0.016       8.6     188     298 ..     909     995 ..     861     999 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00063
      AAA_21   3 vliGpNgsGKSnLLdald 20 
                 +l G+Ng+GKS+L++ + 
  KKY15552.1 506 GLCGRNGAGKSTLMRSIA 523
                 699***********9995 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 1.7e-07
      AAA_21 219 r......gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpllld 303
                        + ++  ++++q+  + +lS G k  lal+ a+l ++   ++ll+DEp n+L+ + ++ l e lk++++  +  ++++H+  +ld
  KKY15552.1 571 IsevlseFGFTDGPDGRQNHKVGSLSGGWKMKLALARAMLLDA---DVLLLDEPTNHLDVANVKWLQEYLKKHTE--ITSLIVSHDSGFLD 656
                 1444555888888899999999999999999999999999999...9****************************..********988776 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 6.1e-05
      AAA_21   3 vliGpNgsGKSnLLdald 20 
                 ++iG Ng+GKS+L+++l 
  KKY15552.1 750 AIIGGNGAGKSTLIKLLT 767
                 79*************993 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.016
      AAA_21 188 lvrslklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkels 286
                  +r l +  i  +++++g +    ++++                  ++ lS G+k    l+ a++  +    ll++DEp n+L+   l  l+  +++ +
  KKY15552.1 909 GYRILEPKVISKHFEDVGLDPEIANHNQ------------------ISGLSGGQKVKVVLAGAMWNNP---HLLVLDEPTNFLDRDSLGGLAVAIRDYK 986
                 5555555555555555555555555555..................45589****999*******999...89**********9766665555554443 PP

      AAA_21 287 rngaQviltTHS 298
                      v++ +H+
  KKY15552.1 987 G---GVVMISHN 995
                 3...56666666 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1     0.012       6.1      28      44 ..     506     522 ..     493     525 .. 0.86
   2 !   16.0   0.0   1.2e-05    0.0062     136     205 ..     594     658 ..     564     671 .. 0.78
   3 !   13.6   0.0   6.4e-05     0.034      23     202 ..     746     999 ..     734    1011 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.012
                 EEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAi 44 
                  + G+NG+GKs l+ +i
  KKY15552.1 506 GLCGRNGAGKSTLMRSI 522
                 579***********999 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.2e-05
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205
                 +LSgG k    + L +A  +   a + llDe   +LD +nvk + e+lk+++ +   +++s+++++l ++
  KKY15552.1 594 SLSGGWK----MKLALARAMLLDADVLLLDEPTNHLDVANVKWLQEYLKKHT-EITSLIVSHDSGFLDEV 658
                 6888876....566677888899999*************************9.67778889999988765 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 6.4e-05
                 TSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEE......SSSSSSCEEEEEEEETTSEEEEEE.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxx.. RF
       SMC_N  23 sksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkk......lkiekeevsisrrvkrkgeseyki.. 113
                 s+   ai+G NG+GKs l+  +    Ge   ++ + ek  +l     +++++++  ve++++++ ++      ++ ++ ev ++++ + ++e + ++  
  KKY15552.1 746 SS-RLAIIGGNGAGKSTLIKLL---TGEVIPQTGKVEKHPNLRIGYIKQHALEH--VEMHLEKTPNQylqwryANGDDREVLMKQTRVLTDEDKAQMek 838
                 44.458999********99877...67776667778888777444355555555..4555544444445565555555566665555555554444422 PP

                 ..TTEEE-H.HHHHHHHHCTT-STT.......................................................................... CS
                 ..xxxxxxx.xxxxxxxxxxxxxxx.......................................................................... RF
       SMC_N 114 ..ngkevtk.kevsellesagiske.......................................................................... 135
                   +  + +  + +++l+ +++ +k+                                                                          
  KKY15552.1 839 pvDLGDGRGpRRIENLMGRQKYKKTfqyevkwvgllpkhntmvsretlldwgfqkliqefddheasreglgyrilepkviskhfedvgldpeianhnqi 937
                 22434444447899999999998889999********************************************************************** PP

                 .CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHC CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 .lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreeml 202
                   LSgG+k    + +++A  + +   l +lDe    LD      +a  ++  +    +++is++ee++
  KKY15552.1 938 sGLSGGQK----VKVVLAGAMWNNPHLLVLDEPTNFLDRDSLGGLAVAIRDYK--GGVVMISHNEEFV 999
                 99*****9....67889999999999***********************9998..8899999999876 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1   3.5e-12   1.8e-09       3      54 .]     851     901 ..     849     901 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 3.5e-12
                 EEEEEEEEEETTEECEEEEEEETTSTGGGTEEEEGGGCSSH.SHHHHHHHHHH CS
      Chromo   3 VerIidhrtdkdgleleYlVKWkglpysentWEpeenlekc.fqelideFkkr 54 
                 +e ++++++ k++   +Y VKW gl +++nt  ++e+l +  fq+li+eF+++
  KKY15552.1 851 IENLMGRQKYKKTF--QYEVKWVGLLPKHNTMVSRETLLDWgFQKLIQEFDDH 901
                 8999**********..******************88666656********985 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   0.00018     0.093      24      40 ..     507     523 ..     500     579 .. 0.80
   2 !   16.2   0.0   2.2e-05     0.012      23     110 ..     750     840 ..     740     900 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00018
      AAA_23  24 ItGpNGaGKTTildAik 40 
                 ++G NGaGK+T+++ i 
  KKY15552.1 507 LCGRNGAGKSTLMRSIA 523
                 79************997 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.2e-05
      AAA_23  23 lItGpNGaGKTTildAiklaLygetprlsrks.......grgfeksdve...iesegkvkayveltfenkdgrytrsiererelskkkgkttkkakle 110
                 +I+G NGaGK+T++  ++     +t++ ++         +    ++  e    + e++ ++y++ ++ n d+r+ + +  ++++  +++++ +++k  
  KKY15552.1 750 AIIGGNGAGKSTLIKLLTGEVIPQTGKVEKHPnlrigyiK----QHALEhveMHLEKTPNQYLQWRYANGDDRE-VLM--KQTRVLTDEDKAQMEKPV 840
                 699**********998886555444444443345444432....333322223334577778888888888864.444..444444444455555444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00057       0.3       2      23 ..     505     526 ..     504     665 .. 0.79
   2 !   14.5   0.0   5.3e-05     0.028       2      29 ..     749     780 ..     748     796 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00057
                 EEEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgek 23 
                  ++ Gr  +GKStL++++ + k
  KKY15552.1 505 YGLCGRNGAGKSTLMRSIANGK 526
                 5799**************9843 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 5.3e-05
                 EEEEESTTSSHHHHHHHHHTS....TEEESSS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge....kaivsdk 29 
                  ai+G   +GKStLi+ ltge    + +v+++
  KKY15552.1 749 LAIIGGNGAGKSTLIKLLTGEvipqTGKVEKH 780
                 79******************853324455555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0012      0.62      96     122 ..     499     525 ..     493     548 .. 0.85
   2 !   15.5   0.1   2.3e-05     0.012     100     133 ..     747     780 ..     712     795 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0012
                  HCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  96 llkdktsvlvGqSGvGKStLinallpe 122
                  llk++   l+G  G+GKStL+ ++++ 
   KKY15552.1 499 LLKGHRYGLCGRNGAGKSTLMRSIANG 525
                  67888899*************999874 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 2.3e-05
                  SEEEEECSTTSSHHHHHHHHCTT-----S----- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgevsek 133
                  +  +++G  G+GKStLi+ l++e   +tg+v ++
   KKY15552.1 747 SRLAIIGGNGAGKSTLIKLLTGEVIPQTGKVEKH 780
                  456789999*******************999876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00056       0.3      24      39 ..     504     519 ..     493     524 .. 0.79
   2 !   13.9   0.4   6.2e-05     0.033      17      39 ..     741     763 ..     735     774 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00056
      AAA_29  24 atlltGpsGsGKSTll 39 
                  + l G++G+GKSTl+
  KKY15552.1 504 RYGLCGRNGAGKSTLM 519
                 45699**********8 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 6.2e-05
      AAA_29  17 ieidlkgatlltGpsGsGKSTll 39 
                 + ++l++   ++G +G+GKSTl+
  KKY15552.1 741 VALSLSSRLAIIGGNGAGKSTLI 763
                 5566667789************9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0021       1.1      10      31 ..     507     528 ..     505     648 .. 0.78
   2 ?    7.1   0.0     0.012       6.3       8      28 ..     749     769 ..     746     810 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0021
      AAA_22  10 vtGesGtGKTtllrrlleqlde 31 
                 ++G  G+GK+tl+r +++ + e
  KKY15552.1 507 LCGRNGAGKSTLMRSIANGKLE 528
                 79**************998754 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.012
      AAA_22   8 lvvtGesGtGKTtllrrlleq 28 
                 l+++G  G+GK+tl++ l+ +
  KKY15552.1 749 LAIIGGNGAGKSTLIKLLTGE 769
                 789*************99765 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0042       2.2      28      54 ..     507     530 ..     505     590 .. 0.72
   2 !    8.8   0.4    0.0022       1.2      19      43 ..     743     766 ..     736     768 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0042
      AAA_15  28 liGkNnsGKSsilealdlFlnnkekkn 54 
                 l+G+N++GKS++++ +    n k + +
  KKY15552.1 507 LCGRNGAGKSTLMRSI---ANGKLEGF 530
                 8*************99...66665544 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0022
      AAA_15  19 idlseeltvliGkNnsGKSsileal 43 
                 ++ls+    +iG N++GKS+++++l
  KKY15552.1 743 LSLSS-RLAIIGGNGAGKSTLIKLL 766
                 55666.789*************998 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.24   1.3e+02       4      22 ..     507     525 ..     504     550 .. 0.82
   2 !   13.1   0.0   0.00016     0.083       2      50 ..     749     805 ..     748     838 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.24
      AAA_28   4 itGgestGKTtlleaLaar 22 
                 + G  ++GK+tl++ +a+ 
  KKY15552.1 507 LCGRNGAGKSTLMRSIANG 525
                 568889*********9975 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00016
      AAA_28   2 ivitGgestGKTtlleaLa.....ar.gypvvpEaareileekl.akgedalpwv.e 50 
                  +i+Gg ++GK+tl++ L+     ++ +++ +p     ++++++ +  e +l+++ +
  KKY15552.1 749 LAIIGGNGAGKSTLIKLLTgevipQTgKVEKHPNLRIGYIKQHAlEHVEMHLEKTpN 805
                 68****************955544334455666666666666654444555555444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00058       0.3       6      84 ..     508     610 ..     504     662 .. 0.65
   2 ?    4.1   0.4     0.076        40       3      20 ..     749     766 ..     747     777 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00058
                 EC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEE.EETTTTTTS-.....-HCHHHCCCCTS--SSS-C.....................CHHHHCCSC CS
       NACHT   6 qGeaGsGKTtLlqklalawaegklpqgafklvFf.lslrelsrsgna..rsladllfsqlpepaapvse.....................vwavllelp 80 
                  G++G GK+tL++++a    eg ++q++ k  F+ ++++e+ +++       + ++++++ e +++v                       +w++ l+l+
  KKY15552.1 508 CGRNGAGKSTLMRSIANGKLEGFPDQNTLKTCFVeHNQGEDAEITILefVAKDPYIAKKGTERISEVLSefgftdgpdgrqnhkvgslsgGWKMKLALA 606
                 69***************9999999998877777645666666665445444455666666666666555555555555555555555555555555555 PP

                 CCEE CS
       NACHT  81 erlL 84 
                 + +L
  KKY15552.1 607 RAML 610
                 5555 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.076
                 EEEEC-TTTCHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqkl 20 
                 +++ G +G GK+tL++ l
  KKY15552.1 749 LAIIGGNGAGKSTLIKLL 766
                 789***********9865 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0052       2.7       3      26 ..     507     530 ..     506     548 .. 0.77
   2 ?    6.1   0.0     0.027        14       3      26 ..     751     774 ..     749     798 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0052
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl 26 
                   l+G++g GKStl++++a+  l+ +
    KKY15552.1 507 LCGRNGAGKSTLMRSIANGKLEGF 530
                   79*************998766555 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.027
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl 26 
                   + G +g GKStl+k L+ ++  + 
    KKY15552.1 751 IIGGNGAGKSTLIKLLTGEVIPQT 774
                   78*************999887444 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.033        17      25      48 ..     504     527 ..     496     537 .. 0.81
   2 !   11.8   0.2   0.00036      0.19      22      48 ..     745     771 ..     736     783 .. 0.87
   3 ?   -2.7   0.1       9.5     5e+03     148     182 ..    1063    1096 ..    1023    1104 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.033
       DUF87  25 HlAilgsTGsGKSntvavLleell 48 
                 + +  g+ G+GKS++++++ +  l
  KKY15552.1 504 RYGLCGRNGAGKSTLMRSIANGKL 527
                 56788999***********98766 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00036
       DUF87  22 vtrHlAilgsTGsGKSntvavLleell 48 
                 ++ +lAi+g  G+GKS+++++L  e++
  KKY15552.1 745 LSSRLAIIGGNGAGKSTLIKLLTGEVI 771
                 4899******************98877 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 9.5
       DUF87  148 eelkkekeelrklknqaiarlldkledllrkggsf 182 
                   +  k+k+++ +lk++  +r l+++e+l + +g+ 
  KKY15552.1 1063 AKK-KKKLTRAQLKDREVRRRLRHIEWLNSPKGTP 1096
                  222.2355788888888888888888888877776 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.012       6.1      24      49 ..     497     522 ..     478     528 .. 0.82
   2 !    7.5   0.1    0.0034       1.8       6      59 ..     722     776 ..     718     778 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.012
                 GG-S-SEEEEEEE-TTSSHHHHHHHH CS
        MeaB  24 akaGraqvvGltGvPGaGkstlveal 49 
                  +  + ++ Gl G  GaGkstl+  +
  KKY15552.1 497 LRLLKGHRYGLCGRNGAGKSTLMRSI 522
                 5556789***************9776 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0034
                 HHHH--SH.HHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT-- CS
        MeaB   6 tlveserp.eakellerllakaGraqvvGltGvPGaGkstlvealglelrrrGkr 59 
                 t v  ++p ++k  l   +     + ++ + G  GaGkstl++ l+ e++ +  +
  KKY15552.1 722 TNVTYTYPgASKPSLMDTSVALSLSSRLAIIGGNGAGKSTLIKLLTGEVIPQTGK 776
                 555556665555555555556667899*****************99988766555 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0021       1.1      23      51 ..     509     537 ..     504     565 .. 0.70
   2 ?    3.9   0.0     0.032        17      21      37 ..     751     767 ..     739     794 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0021
      AAA_13  23 GwNGaGKTtLSrllrslelgetepkfang 51 
                 G+NGaGK+tL r +++ +l+   ++ +  
  KKY15552.1 509 GRNGAGKSTLMRSIANGKLEGFPDQNTLK 537
                 9**************99887655544333 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.032
      AAA_13  21 iYGwNGaGKTtLSrllr 37 
                 i G NGaGK+tL +ll 
  KKY15552.1 751 IIGGNGAGKSTLIKLLT 767
                 77**********99986 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.018       9.3      20      89 ..     582     638 ..     573     639 .. 0.76
   2 ?    4.8   0.0     0.065        34      27      82 ..     934     976 ..     919     984 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.018
     SbcCD_C  20 dgkekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 dg++++ ++++g+lSGG k   + lala   a+l++         ++++LDE  + lD  +++ l e+l+
  KKY15552.1 582 DGPDGRQNHKVGSLSGGWK---MKLALA--RAMLLDA--------DVLLLDEPTNHLDVANVKWLQEYLK 638
                 788888999**********...555555..3344444........6899999999999999887777765 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.065
     SbcCD_C  27 srssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesia 82 
                 ++++++lSGG+k   + ++la a+    ++      ++ l++LDE  + lD +s+ 
  KKY15552.1 934 HNQISGLSGGQK---VKVVLAGAM----WN------NPHLLVLDEPTNFLDRDSLG 976
                 678889999999...777777443....44......47889999999888888876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.064        34       3      21 ..     507     525 ..     506     570 .. 0.74
   2 ?    6.8   0.0     0.018       9.5       3      45 ..     751     812 ..     749     842 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.064
      AAA_18   3 ltGtpGvGKttlakeLskr 21 
                 l+G  G+GK+tl + +++ 
  KKY15552.1 507 LCGRNGAGKSTLMRSIANG 525
                 8999**********99653 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.018
      AAA_18   3 ltGtpGvGKttlakeL..........skrl.gf..gvnlrdvakenglllevdpe......a 45 
                 + G  G+GK+tl k L           +++ ++  g++ ++ + + ++ le +p+       
  KKY15552.1 751 IIGGNGAGKSTLIKLLtgevipqtgkVEKHpNLriGYIKQHALEHVEMHLEKTPNqylqwrY 812
                 78889***********7777777766444434488888888888888888888884443332 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.021        11      30      49 ..     506     525 ..     496     547 .. 0.75
   2 ?    5.9   0.0     0.019        10      30      54 ..     750     774 ..     745     782 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.021
                 HHHS--SHHHHHHHHHHHHH CS
        MukB  30 tlsGgnGaGksttmaafvta 49 
                  l G nGaGkst m ++   
  KKY15552.1 506 GLCGRNGAGKSTLMRSIANG 525
                 589***********887654 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.019
                 HHHS--SHHHHHHHHHHHHHHS--T CS
        MukB  30 tlsGgnGaGksttmaafvtaliPdl 54 
                 ++ GgnGaGkst +  +   +iP  
  KKY15552.1 750 AIIGGNGAGKSTLIKLLTGEVIPQT 774
                 567*********9998888888876 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.17        89       3      72 ..     507     578 ..     506     663 .. 0.58
   2 ?    8.2   0.0    0.0046       2.4       1      27 [.     749     775 ..     749     808 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.17
                 EEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---CCS...SSEEEE........T-EB--CHHHHHHH CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeaseravkeelkek........ekkledfsevreei 72 
                 ++G   +GKS+++ ++   + l   p   T +++ +++++ e+a+     +++ e+        +k  e +sev  e+
  KKY15552.1 507 LCGRNGAGKSTLMRSIANGK-LEGFPDQNTLKTCFVEHNQGEDAE-----ITILEFvakdpyiaKKGTERISEVLSEF 578
                 689999*******9999888.666666777777777777777744.....2222221112344455555555555554 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0046
                 EEEEEBTTTTHHHHHHHHHTS--S--- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprg 27 
                 +a++G   +GKS+++  L+ge i  +g
  KKY15552.1 749 LAIIGGNGAGKSTLIKLLTGEVIPQTG 775
                 589*****************9876665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       7.1   3.7e+03      47     101 ..     167     219 ..     153     233 .. 0.65
   2 ?    5.1   0.0     0.032        17      23      40 ..     507     524 ..     498     528 .. 0.86
   3 ?    6.4   0.1     0.013       6.8      21      41 ..     749     770 ..     739     785 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 7.1
      AAA_30  47 grviglAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagmvd 101
                 g+v+++A  gk+A++ + ++g + +  ak +  l++ +  + ++l+ + E gm d
  KKY15552.1 167 GTVAAFALLGKMADKAQMGTGSKDEEEAKDI--LRESMGHHLKELIPIVEGGMHD 219
                 7899999999999999988887444433333..2222233455666666666655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.032
      AAA_30  23 ltGpAGtGKttalkalre 40 
                 l G+ G+GK+t+++++++
  KKY15552.1 507 LCGRNGAGKSTLMRSIAN 524
                 6799**********9975 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.013
      AAA_30  21 avltGpAGtGKttalkal.rea 41 
                  ++ G+ G+GK+t++k l  e+
  KKY15552.1 749 LAIIGGNGAGKSTLIKLLtGEV 770
                 5789************993444 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.011         6       4      20 ..     507     523 ..     506     566 .. 0.83
   2 ?    3.8   0.0      0.11        57       4      19 ..     751     766 ..     749     822 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.011
      AAA_33   4 lvGlpGsGKstlaerll 20 
                 l+G +G+GKstl ++++
  KKY15552.1 507 LCGRNGAGKSTLMRSIA 523
                 69***********9987 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.11
      AAA_33   4 lvGlpGsGKstlaerl 19 
                 ++G +G+GKstl++ l
  KKY15552.1 751 IIGGNGAGKSTLIKLL 766
                 6899********9976 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.015       7.9      32      48 ..     508     524 ..     495     544 .. 0.81
   2 ?    4.7   0.0     0.037        20      16      44 ..     738     764 ..     735     815 .. 0.85
   3 ?   -3.1   0.1       8.9   4.7e+03     158     197 ..    1046    1083 ..    1036    1090 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.015
      AAA_27  32 yGpNEAGKstalrAisd 48 
                  G N AGKst++r+i +
  KKY15552.1 508 CGRNGAGKSTLMRSIAN 524
                 79***********9975 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.037
      AAA_27  16 drsldfsaeeadlhliyGpNEAGKstalr 44 
                 d+s+++s  +++l + +G N AGKst+++
  KKY15552.1 738 DTSVALS-LSSRLAI-IGGNGAGKSTLIK 764
                 6666666.4666765.588*******976 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 8.9
      AAA_27  158 lrevleaLeaeadelfkprkskkrainealeeleeakkel 197 
                   ++v   +e++ d  fk +k+kk  +++a+ + +e++++l
  KKY15552.1 1046 ASAVNSGVEDNSDMKFKAKKKKK--LTRAQLKDREVRRRL 1083
                  45566667777777777776666..444444444444444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.082        43       3      22 ..     503     522 ..     501     535 .. 0.86
   2 ?    7.1   0.1    0.0079       4.2       4      22 ..     748     766 ..     745     775 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.082
      AAA_24   3 lkiliyGpsgiGKTtlakel 22 
                  ++ + G +g+GK+tl++++
  KKY15552.1 503 HRYGLCGRNGAGKSTLMRSI 522
                 577899***********987 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0079
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                 +++i+G +g+GK+tl+k l
  KKY15552.1 748 RLAIIGGNGAGKSTLIKLL 766
                 899*************987 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1       0.1        54      58      75 ..     507     524 ..     495     537 .. 0.87
   2 ?    7.1   0.0    0.0051       2.7      58      97 ..     751     798 ..     741     809 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.1
      DUF815  58 LwGarGtGKSslvkalln 75 
                 L G  G+GKS+l++++ n
  KKY15552.1 507 LCGRNGAGKSTLMRSIAN 524
                 89************9976 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0051
      DUF815  58 LwGarGtGKSslvkallneyaeeg........Lrlievekedlkelpk 97 
                 ++G  G+GKS+l+k l+ e+  ++        Lr+  ++++ l+++++
  KKY15552.1 751 IIGGNGAGKSTLIKLLTGEVIPQTgkvekhpnLRIGYIKQHALEHVEM 798
                 7899***************99888788888889998888888887765 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.18        94       6      27 ..     507     528 ..     503     540 .. 0.87
   2 ?    7.3   0.0    0.0069       3.6       3      51 ..     748     811 ..     746     815 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.18
   PduV-EutP   6 liGkvgsGKttLtqalkgeelk 27 
                 l G+ g+GK tL++++ + +l+
  KKY15552.1 507 LCGRNGAGKSTLMRSIANGKLE 528
                 78**************998775 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0069
   PduV-EutP   3 killiGkvgsGKttLtqalkg..............eelkYkktqaiefsdeviD.tPGeylenr 51 
                 ++ +iG  g+GK tL + l+g               ++ Y k  a+e+ ++ ++ tP +yl+ r
  KKY15552.1 748 RLAIIGGNGAGKSTLIKLLTGevipqtgkvekhpnLRIGYIKQHALEHVEMHLEkTPNQYLQWR 811
                 7789*****************8888888888888778888888888888887644888888766 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.038        20       4      26 ..     507     529 ..     504     553 .. 0.79
   2 ?    4.9   0.0     0.054        28       2      22 ..     749     769 ..     748     803 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.038
                 EESSTTSSHHHHHHCHCT-CCC- CS
         Roc   4 lvGdsgvGKtsllkrfvedkfse 26 
                 l+G +g+GK++l++++ ++k + 
  KKY15552.1 507 LCGRNGAGKSTLMRSIANGKLEG 529
                 79**************9999864 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.054
                 EEEESSTTSSHHHHHHCHCT- CS
         Roc   2 vvlvGdsgvGKtsllkrfved 22 
                 + ++G +g+GK++l+k ++ +
  KKY15552.1 749 LAIIGGNGAGKSTLIKLLTGE 769
                 789************987754 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.026        14       9      32 ..     507     530 ..     505     591 .. 0.69
   2 ?    4.5   0.0     0.033        17       7      36 ..     749     778 ..     744     804 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.026
                 EEEBTTSSCCCCCCTTSSSS---- CS
      Septin   9 vvGesglGkttlintlfetdliee 32 
                 ++G++g Gk+tl++++ + +l   
  KKY15552.1 507 LCGRNGAGKSTLMRSIANGKLEGF 530
                 69**************99888765 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.033
                 EEEEEBTTSSCCCCCCTTSSSS-------- CS
      Septin   7 lmvvGesglGkttlintlfetdlieeekle 36 
                 l ++G +g Gk+tli+ l  + + ++ k+e
  KKY15552.1 749 LAIIGGNGAGKSTLIKLLTGEVIPQTGKVE 778
                 7799************99887776664444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0      0.02        10       3      22 ..     507     536 ..     505     620 .. 0.72
   2 ?    3.0   0.0      0.25   1.3e+02       3      22 ..     751     770 ..     749     810 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.02
                 EESSTTSSHHHHHHHHHHH..........H CS
         AAA   3 lyGppGtGKTllakavake..........l 22 
                 l+G  G GK++l++++a+           l
  KKY15552.1 507 LCGRNGAGKSTLMRSIANGklegfpdqntL 536
                 89***************9754444444332 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.25
                 EESSTTSSHHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakel 22 
                 ++G  G GK++l+k +  e+
  KKY15552.1 751 IIGGNGAGKSTLIKLLTGEV 770
                 7899***********99985 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.7   1.4e+03      53     107 ..     205     258 ..     202     280 .. 0.71
   2 ?    2.4   0.1      0.16        82      21      37 ..     507     523 ..     503     529 .. 0.87
   3 ?    6.4   0.1    0.0091       4.8      22      45 ..     752     775 ..     746     781 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.7
  Zeta_toxin  53 dlRelhPeyeeilkadpkkaseltqkdaselvekllqeaiengyniivegtlrsp 107
                 +l+el+P +e+ + + ++++++++ k++  l++ l +  +  ++ ++++ t+++p
  KKY15552.1 205 HLKELIPIVEGGMHDLKSDVAKQAIKAMNSLSTLLQNDDVAPRIPLLID-TMKNP 258
                 5777778777777777777777777777777777777766666666666.45554 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.16
  Zeta_toxin  21 lgGqpGAGKselaellk 37 
                 l G  GAGKs+l++ ++
  KKY15552.1 507 LCGRNGAGKSTLMRSIA 523
                 7799********99876 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0091
  Zeta_toxin  22 gGqpGAGKselaellkdelerqgn 45 
                  G+ GAGKs+l++ll+ e+ +q +
  KKY15552.1 752 IGGNGAGKSTLIKLLTGEVIPQTG 775
                 4779***********999876554 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.047        25       8      26 ..     507     525 ..     503     552 .. 0.79
   2 ?    4.7   0.0     0.048        25       7      26 ..     750     769 ..     745     797 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.047
  Ploopntkinase3   8 lvGqPGaGkstlmaeltkg 26 
                     l G  GaGkstlm ++++g
      KKY15552.1 507 LCGRNGAGKSTLMRSIANG 525
                     7899*********999876 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.048
  Ploopntkinase3   7 ylvGqPGaGkstlmaeltkg 26 
                      ++G  GaGkstl+  lt  
      KKY15552.1 750 AIIGGNGAGKSTLIKLLTGE 769
                     489***********999965 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.5   1.3e+03     144     159 ..     822     837 ..     789     840 .. 0.76
   2 ?   11.5   2.4   0.00031      0.16      64     114 ..    1032    1081 ..    1009    1096 .. 0.48

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.5
       SR-25 144 eedGPvltDeqksriq 159
                   +  vltDe k++++
  KKY15552.1 822 MKQTRVLTDEDKAQME 837
                 556789******9875 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00031
       SR-25   64 sssssssssssssssssssssssddrkkrgkkkdkkkkkkkkkkkkkkekk 114 
                   +ss+ ss  ss ++s+  s ++d+   + k k+kkk  + +  k +  ++
  KKY15552.1 1032 PGSSNVSSVVSSATASAVNSGVEDNSDMKFKAKKKKKLTRAQ-LKDREVRR 1081
                  233333333333333333333333333333333333332222.22223333 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1    0.0076         4      21      37 ..     506     522 ..     496     523 .. 0.83
   2 ?    2.7   0.2     0.033        17      13      37 ..     742     766 ..     737     767 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0076
     DUF3584  21 nieGtNaaGKTtLlrLi 37 
                  ++G N+aGK tL+r i
  KKY15552.1 506 GLCGRNGAGKSTLMRSI 522
                 59*************76 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.033
     DUF3584  13 eldldghtnieGtNaaGKTtLlrLi 37 
                  l l+ +  i G N+aGK tL++L+
  KKY15552.1 742 ALSLSSRLAIIGGNGAGKSTLIKLL 766
                 578899999*************997 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.4   7.1e+02      82     137 ..     230     278 ..     218     310 .. 0.71
   2 ?    3.5   0.0       0.1        54       1      18 [.     509     526 ..     509     553 .. 0.82
   3 ?    3.1   0.0      0.13        71       1      21 [.     753     773 ..     753     778 .. 0.82
   4 ?   -0.3   0.3       1.5   8.1e+02     147     182 ..    1053    1088 ..    1036    1090 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.4
      CLP1_P  82 alvkelareveekleenkkakasgliIntpGwvkglgaellleliealepdvvvvl 137
                 ++++     +++ l++++ a + +l+I+t+   k   a++l ++i al  +  v++
  KKY15552.1 230 KAMN----SLSTLLQNDDVAPRIPLLIDTM---KNPSAQTLAKAILALSQTTFVAI 278
                 3333....34456679999999*******9...88888888777766665444443 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.1
      CLP1_P   1 GpkdsGKSTlarlLlNya 18 
                 G + +GKSTl+r ++N  
  KKY15552.1 509 GRNGAGKSTLMRSIANGK 526
                 67889**********965 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.13
      CLP1_P   1 GpkdsGKSTlarlLlNyalrk 21 
                 G++ +GKSTl++lL  +++ +
  KKY15552.1 753 GGNGAGKSTLIKLLTGEVIPQ 773
                 78899*********9988765 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1.5
      CLP1_P  147 krdlplskvkvvklpkspgvvqrsreerrelreeri 182 
                   +d  + k+k++k +k+ +++ ++re rr+lr+  +
  KKY15552.1 1053 VEDNSDMKFKAKKKKKLTRAQLKDREVRRRLRHIEW 1088
                  4444557899999*******************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.90u 0.28s 00:00:01.18 Elapsed: 00:00:00.44
# Mc/sec: 7568.74
//
Query:       KKY15553.1  [L=446]
Description: putative sarcosine oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-36  124.5   0.0    8.3e-36  124.3   0.0    1.0  1  DAO              FAD dependent oxidoreductase
      9e-07   29.0   0.0    1.8e-06   28.1   0.0    1.5  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
     0.0026   17.8   0.0     0.0056   16.7   0.0    1.6  2  NAD_binding_9    FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.012   14.8   0.0      0.019   14.1   0.0    1.3  1  K_oxygenase      L-lysine 6-monooxygenase (NADPH-requiring)
      0.092   13.0   0.0       0.47   10.7   0.0    2.0  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
       0.22   11.8   0.0       0.37   11.1   0.0    1.3  1  TrkA_N           TrkA-N domain
       0.25   10.6   0.0        2.4    7.3   0.0    2.0  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.0   3.2e-39   8.3e-36       1     351 [.      15     405 ..      15     406 .. 0.72

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 3.2e-39
                 EEEEECTSHHHHHHHHHHH.HTT....EEEEESSSSTT.SSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEES.S CS
         DAO   1 dvviiGGGiiGlstAyeLa.rrg....Vtllekgdiag.sgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaa.d 92 
                 d++i+G+Gi+G stAy+L+ +++    +t+l+++++++ ++aS+   +++++ ++  p    + +l++ea++e+++ +        y++tG + l + d
  KKY15553.1  15 DILIVGAGIFGTSTAYHLSlTHPspssITVLDRAPFPSpQAASSDINKIVRADYS-DP---FYMDLAYEAMDEWAKSSTL-K--PFYHQTGWVMLPEtD 106
                 8*****************95565789*********99967************886.44...234**********999976.4..56*********7635 PP

                 HHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTT..ST....TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEE........T CS
         DAO  93 eeelealdkllallleagldaelldaeevrelepa..lp....gllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeed........g 177
                 ++   + ++++++ ++ ++  + ++ + +r ++ +   +    g+  a+++p++g++d+ ++t al++aa ++G++   g ev++l   +         
  KKY15553.1 107 SDIASRTRANFKRSGRPDPS-SDISHSDIRSKWDGvfKDmdmtGFGQAYYNPEAGRADASAATEALMKAAVSNGIQYKVG-EVKSLIP-StptesttsT 202
                 55555566666666544543.4588877998886665337788*************************************.****833.1233454444 PP

                 CEEEEEEECTEEE.EEEEEEEE--GGGHH.HHHTTCTTTSEE.EEEEEEEEEE.EECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSE.. CS
         DAO 178 kvwgverttpgen.daadavVnaaGawsd.llgllkeldlpi.spvrgqvlvl.kplseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtad.. 270
                  ++gv  tt++   ++ + + +++Gaw+  ll   ++l++++  p+ + + +   p  + + s  ++ p   ++ d+  v+++   +g+++  g ++  
  KKY15553.1 203 TLHGV-LTTSNDLyTS-RIILLCTGAWAPwLL---HPLEHQLsLPAEHRITTQlLPAGCITTSI-PLSPSDTKRYDSSPVFIYGN-QGEIMPSGRDSci 294
                 55555.4444333245.88**********999...77755552333333322223444432222.44444447787888888887.5888887777788 PP

                 ........................EETTCSS...TSCSHHHHHHHHHHHHHHSGGGCGEEEEEEEEEE.ETTSSEEEEEEE..TEEEEEEEEECTTTHH CS
         DAO 271 ........................eesgddd...pevdeedidellealrklfPqlgdvlrkwaGlrp.lpdglpligetp..gvkglylatGhsghGl 339
                                         + s++++    +   e  d +++++  l+ + +++l+ + ++   ++  + li ++p     +ly+atG s h +
  KKY15553.1 295 kftnantfthseihpetgesvpvpPLSHPQSfvpEPLKLESQDLIRRRIPSLLLSTSPILEWRICHDIlTRTQDQLICPHPskLLTNLYFATGGSFHSW 393
                 88888888888888777777777644444442212333334444666666666554778865568888448899*****7777666************* PP

                 HHHHHHHHHHHH CS
         DAO 340 tlapatGkllae 351
                 ++ p +Gk++++
  KKY15553.1 394 KFLPTIGKYVVK 405
                 *********986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   7.1e-10   1.8e-06       1      59 [.      18      79 ..      18      87 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 7.1e-10
                   EE--SHHHHHHHHHHHCC...TEEEEEE-SSSSSSGGG-EECETT.CEECTS---EEETTHHH CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka...gfdvlllekrdrlGGraasyevpg.vrvdygahifhgsgyyp 59
                   IvGaG++G ++Ay+L+       ++++l++++ ++ +aas ++++ vr+dy    +++   y+
     KKY15553.1 18 IVGAGIFGTSTAYHLSLThpsPSSITVLDRAPFPSPQAASSDINKiVRADYSDPFYMDLA-YE 79
                   9***************85455779*******************999*****988888864.55 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.2e-06    0.0056       2      76 ..      18      88 ..      17     114 .. 0.73
   2 ?   -3.3   0.0       3.1   7.9e+03     135     154 ..     206     225 ..     170     226 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.2e-06
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtdqseelllNvpasemslftddpptfaeWlrer 76
                   ivGaG+ G++++ +L   +  +sp +it+ d++++ + +++++d ++ ++  ++     +++   + ++eW+++ 
     KKY15553.1 18 IVGAGIFGTSTAYHLSLTH--PSPSSITVLDRAPFPSPQAASSDINKIVRADYSDP--FYMDLAYEAMDEWAKSS 88
                   9***************997..**************878898888665544333322..22222235666666665 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.1
  NAD_binding_9 135 avlladgaslaadaVvLAlG 154
                     vl+++++ ++ + + L++G
     KKY15553.1 206 GVLTTSNDLYTSRIILLCTG 225
                    46677777778888888888 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   7.6e-06     0.019     186     251 ..       8      74 ..       2      90 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.6e-06
  K_oxygenase 186 eellakkriaVvGsGqSaaeifedllrrqkk.velklvtrsealeplddspfvneifsPeyvdyfys 251
                  e++ ++ +i++vG+G  +   +++l  + ++ ++++++ r++   p   s+ +n+i+ ++y d fy 
   KKY15553.1   8 ENKTHHSDILIVGAGIFGTSTAYHLSLTHPSpSSITVLDRAPFPSPQAASSDINKIVRADYSDPFYM 74 
                  45677899*****************9887755*********************************95 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00018      0.47       1      33 [.      16      48 ..      16      70 .. 0.91
   2 ?   -0.7   0.0      0.64   1.6e+03      82      96 ..     168     182 ..     164     199 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00018
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESS CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrs 33
                     +li+GaG  G ++a  l+ +++ ++ itv dr 
       KKY15553.1 16 ILIVGAGIFGTSTAYHLSLTHPSPSSITVLDRA 48
                     89*********************99******97 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.64
                      HHHHHHHHHHHT-EE CS
  Sacchrp_dh_NADP  82 sldvlkaCietgvhy 96 
                      +++++ka++++g+ y
       KKY15553.1 168 TEALMKAAVSNGIQY 182
                      6789********998 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00014      0.37       1      53 [.      16      72 ..      16      78 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
                EEEES-SHHHHHHHHHHHHTT...EEEEEEESSHHHHHHHHHTTSE.EEES-TTSHH CS
      TrkA_N  1 iiiiGlGrvGrslaeeLsegg...kdvvvidkdeerveelreegle.vvvgdatdee 53
                i+i+G+G +G+s a  Ls  +   ++++v d+ +    +++   ++ +v +d++d+ 
  KKY15553.1 16 ILIVGAGIFGTSTAYHLSLTHpspSSITVLDRAPFPSPQAASSDINkIVRADYSDPF 72
                79*****************8889*77********99999999998879999999985 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0   0.00094       2.4     143     188 ..      14      63 ..       2      70 .. 0.63
   2 ?    0.9   0.0     0.082   2.1e+02     182     237 ..     164     226 ..     154     246 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00094
                  SEEEEES-SHHHHHHHHHHHHHT-...EEEEEESSSSSS.TTS-HHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx.xxxxxxxxxx RF
  Pyr_redox_2 143 krivvvGgGyiGvElAaalaklgk...evtlveardrll.raldkelsaa 188
                   +i++vG+G  G+ +A +l+        +t++++++ +  +a  +++ ++
   KKY15553.1  14 SDILIVGAGIFGTSTAYHLSLTHPspsSITVLDRAPFPSpQAASSDINKI 63 
                  67888888888888888864432233367777777776655555555555 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.082
                  -HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE......EEE.EEETTSCEEEESEEEE-S-E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxx.xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 182 dkelsaaleealekeGvevklgtsvkeidgnge......kle.vvledgeeidadlvvvavGv 237
                   +++++al++a   +G++ k+g++   i + ++       l+ v +++++ +  + +++++G 
   KKY15553.1 164 ASAATEALMKAAVSNGIQYKVGEVKSLIPSTPTesttstTLHgVLTTSNDLYTSRIILLCTGA 226
                  567889999999999*****9988765555555666655444677777777888888999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.53
# Mc/sec: 2535.52
//
Query:       KKY15554.1  [L=873]
Description: putative glycoside hydrolase family 3 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-43  148.7   0.0      4e-43  147.8   0.0    1.5  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
    6.3e-40  137.5   0.0    9.2e-40  137.0   0.0    1.2  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    7.4e-21   74.0   0.0    1.2e-20   73.3   0.0    1.4  1  Fn3-like         Fibronectin type III-like domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.8   0.0   6.6e-47     4e-43       1     204 []     406     666 ..     406     666 .. 0.89

  Alignments for each domain:
  == domain 1  score: 147.8 bits;  conditional E-value: 6.6e-47
                      -EEEEEGSS--S-.S-STE.....EEEEESGGGS............SS-SS-BSSS----S---HHHHHHHHHHH............-HHHHHH CS
                      xxxxxxxxxxxxx.xxxxx.....xxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxx RF
  Glyco_hydro_3_C   1 iVLLkNennlLPL.kkklk.....kiaviGpnad............etlklGggsgtvtvsylvsplegirerles..........eegideav 66 
                      +VL+kNen++LPL + k       +i ++G++a             +tl +G+gsg+v  s +v+pl +++++l++          +  +++  
       KKY15554.1 406 TVLVKNENGMLPLsR-KPPsdsklRIGIYGEDAGpaapcedrgcnkGTLISGWGSGAVDLSRHVDPLAALKDALSDsnfeltsditNGLSKAGR 498
                      59***********63.44346778**************************************************88*********765666667 PP

                      HHHHHTSEEEEEEEES...SB-TT........SCSGHHSSTTHHHHHHHHH....HTTSSEEEEEEESSGG--TTT.GTTTEEEEEE-S--GCC CS
                      xxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C  67 eaakeaDvavvvvgedpeiegEgv........Drtdlalpeaqdelikava....aanknvvvvlqsggpvavepw.keenvkAilaawlpGqe 147
                      +  +++D+++v++++d   +gEg+        Dr+dl+l+++ d+li++va    + n +v+ v+++ gpv +e++ +e++vkA+l a lpG+e
       KKY15554.1 499 KSLEDQDICIVFANAD---AGEGFrsvgsvhgDRNDLDLQKGGDALIRTVAkgcgNGNGKVIAVIHAVGPVILENFiDEPSVKAVLLANLPGEE 589
                      8899************...********************************555555588***************9*999************** PP

                      HHHHHHHHHTTSS---B--SS-EESSSGGG...........................S.-----S...ETTTT-BCH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx...xxxxxx..xx..........xx.xxxxxx...xxxxxxxxx RF
  Glyco_hydro_3_C 148 gGtaiadvLfGdvnPsGkLpvtfpksledl.pd...dyyeek..dt..........yk.fegtpl...YpeGlglsY 204
                      +G+a++dv+fGd + sG+Lp+t+ ksl+d+ p     yy +    +          y+ f+++++   Y++G+glsY
       KKY15554.1 590 SGNALVDVMFGDIDASGRLPYTVGKSLKDYgPGaqiMYYPNGvvPQatfseglyidYRyFDKENIsprYEFGYGLSY 666
                      ******************************86666555555565115678889999777777777888*******99 PP

>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0   0.0   1.5e-43   9.2e-40      62     317 ..      84     337 ..      73     339 .. 0.89

  Alignments for each domain:
  == domain 1  score: 137.0 bits;  conditional E-value: 1.5e-43
                    ....S--EEEE---BTTB---SSS.---S-HHHHHHHT-HHHHHHHHHHHHHHHHHHT--EE---B--.---STTSSSGGGSS-SSHHHHHHHHHH CS
  Glyco_hydro_3  62 srlgiPlllavDqegGlvqrlgeg.tlfPsalalaatssldlikelgriiakelralgididfaPvvd.vnrdprngigvrsFsedpelvaalaaa 155
                    +++g P+l+  D   G++  + ++ t+fP+ +  +at++++li+e g + a+e+r  g+++ ++P +  ++r+p+ g+  ++F++dp l +  aa+
     KKY15554.1  84 TQVGFPALCLQDGPLGIR--FADKiTSFPAGITTGATWNRTLIRERGAAHAREARLKGVHVLLGPAMGpLGRQPAGGRVWEGFGSDPVLQGIAAAE 177
                    6789************99..88888****************************************99559************************** PP

                    HHHHHHHTT-EEEEEEETTGTT-SSETTTSEE.....B----HHHHHHTTHHHHHHHHHTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS- CS
  Glyco_hydro_3 156 mvkGlqgagvaatvKHFpghGdgavdshkelp.....tvdhseeelrevdlvpfqaaieagvdsVMtaHvqfpaldgtpatgskklltdvLRkelG 246
                    +++G+q++g++at+KH+ g  + +     e+        +++ + l+ev++ pf   ++agv sVM +   ++ ++++ + g++kll ++L++elG
     KKY15554.1 178 TIEGIQAEGIMATAKHYVGNEQEHFRQSFEWGlpnalSANIDDRTLHEVYAWPFADSVRAGVASVMCS---YQMVNNSYTCGNSKLLNGILKDELG 270
                    *******************8766666655554112224678999************************...************************* PP

                    --SEEEES-TTSHHHHCCS-HHHHHHHHHHHT-SBEES-S---SG......HHHHHHHHHTTSS-HHHHHHHHHHHH CS
  Glyco_hydro_3 247 FdGvvvsDalamkeiadrggkeeavvlaLkAGvDilLvpeertse......ikalkkavkeGeltearidesvrrvl 317
                    F+G++ sD+l           ++  v++  AG+D+++  +    +         l  a+ +G+l+++r+++ v+r++
     KKY15554.1 271 FQGFIQSDWL----------AQRSGVASALAGLDMSMPGDGLRWAngeslwGPHLSLAALNGSLPMERLNDMVTRIV 337
                    **********..........34444555559******98876555677776678999999***************97 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.0   2.1e-24   1.2e-20       1      71 []     784     864 ..     784     864 .. 0.91

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 2.1e-24
                 EEEEEEEEESS-.......STTSBS-EEEEEEEEEE-TT-EEEEEEEEECGGG-EEETTTTEEE--...SCEEEEEEESSS CS
    Fn3-like   1 evvqlYvsdpes.......sverpvkeLkgFekveLapGesktvtftldrkdlsvwdeekqkwvve...pGeytvlvgtss 71 
                 +v qlY+s+p++       +++ p ++L++F+k+eL + esktv+++l+r+dls+w++ +q+wv++   +G+++v++g+ss
  KKY15554.1 784 DVPQLYLSFPSNvkdtngdQIDFPIRVLRAFDKIELDADESKTVEMKLTRRDLSYWSVVRQNWVMPgdaEGRFRVMIGRSS 864
                 599********555555558**********************************************6556*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (873 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.53
# Mc/sec: 4976.53
//
Query:       KKY15555.1  [L=539]
Description: putative malate synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.6e-229  760.5   0.0   7.6e-229  760.3   0.0    1.0  1  Malate_synthase  Malate synthase


Domain annotation for each model (and alignments):
>> Malate_synthase  Malate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  760.3   0.0  4.2e-233  7.6e-229       3     525 ..      13     530 ..      11     531 .. 0.99

  Alignments for each domain:
  == domain 1  score: 760.3 bits;  conditional E-value: 4.2e-233
                      CCCHHTHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHSHHHCCTCCCH-TSS---S-EECCCCE-TCCCCCCC-CCHCCC CS
  Malate_synthase   3 fvkeevleaaeilteealefvaelvrdltprrrelLeeRdelqaeidkgelndflketkylreepewktatlhielqdrrveiiGkadrkmiin 96 
                      +++++ ++a++ilt+ea +f+a l+r+++ +r++lL++R+ +qae+dkg l+dfl+etk++re++ wk a+ +++l drrvei+G++drkm++n
       KKY15555.1  13 ILGNVPEPAKKILTKEATAFLALLHRSFNGTRKALLQRRAIRQAELDKGVLPDFLPETKHIRENDIWKGAPPAPGLIDRRVEITGPTDRKMVVN 106
                      6788999*************************************************************************************** PP

                      CCCCSSSEEEEESSTTS--HHHHHHCCHHCCCHCCTTT-EEEET-TSEEEEETTSESSSSEEEEE---TTTEEEEEECTTCEEEHHHHHHHHHH CS
  Malate_synthase  97 alnesaittiaDfEDsvapnwenlvkGqlnledavrgrisfrkenkdksYklndglegrsllfvRnrGwhltekhilvdGeeisegilDfglif 190
                      aln++++t++aDfEDs+ap+wen+++Gq+nl+da+r++++f++   +k+Ykl++ ++ +++l+ R+rGwh++ekh++vdGe+is++++Dfgl+f
       KKY15555.1 107 ALNSNVWTYMADFEDSSAPTWENMINGQVNLYDAIRKQVDFKQG--EKEYKLRT-DRVLPTLIARARGWHMEEKHMTVDGEPISASLFDFGLYF 197
                      *******************************************8..9******6.899************************************ PP

                      HHHHHHCSCCTTSSEEEEE-S-SSHHHHHHHHHHHHHHHHHCTSSTTSCEEEEEE-SHHHHTTHHHHHHCTTTTEEEEEE-CHHHHHHHHHHTC CS
  Malate_synthase 191 fhnakelklsrgggpyivlPKmegpqEaalwnevFsraedllglprgtikatvliEtlraslnldeiiyelrdrvaglNcGrlDyifseiktlr 284
                      fhna el ++rg+gpy++lPKme++ Ea+lwn+ F++a+d++g+prgti+ tvliEt++a++++deiiyelrd+++glNcGr+Dyifs ik++r
       KKY15555.1 198 FHNAFEL-VKRGTGPYFYLPKMESHLEARLWNDAFNLAQDYIGMPRGTIRGTVLIETITAAFEMDEIIYELRDHSSGLNCGRWDYIFSVIKKFR 290
                      *******.************************************************************************************** PP

                      CCCGCB...CGGGGCCSHHHHHHHHHHHHHHHHTT.CCCCCCCTCSEECCCEHHHCCCHHHHHHHCHHHHHCT-SEEEESSHHHHHHHHHHHHH CS
  Malate_synthase 285 eagdmvLPdRkavtktapfikaYekllvktchkrgvhamgGlaakipikkdmeaneellekvredKlrevraGadgaWvahPtlatlaaevfee 378
                      +++++vLPdR+avt+t+pf++aY++ll+ktch+rgvhamgG+aa+ipik++++ane +++ vr+dKlre+raG+dg+WvahP+la +a+evf++
       KKY15555.1 291 NNPNFVLPDRSAVTMTVPFMDAYVRLLIKTCHRRGVHAMGGMAAQIPIKDNPKANEVAMNGVRQDKLREARAGHDGTWVAHPALAAIASEVFNK 384
                      ********************************************************************************************** PP

                      CHCHCHHCCHHTTTHHHHHHHHCS.--BBHHHHHHHHHHHHHHHHHHHHHHCT-SSEEETTEEESHHHHHHHHHHHHHHHHTTSC-CCHSHCHH CS
  Malate_synthase 379 vdvapnQielakeevritaddLltkipeaeeteeglrnnvqvglqYvvaWlrgvGcvpiihLmEDaATaeiSrqqlaqWirhgvvlkeqgvkvs 472
                      ++ +pnQi +++eev++ta+dLl+    +++teeg+r+n+++gl+Y++ WlrgvGcvpi++LmEDaATae+Sr+ql+qW++hgv + + g+kv+
       KKY15555.1 385 HMPTPNQIFNRREEVNVTANDLLNMNMPGTITEEGIRKNLNIGLGYMEGWLRGVGCVPINYLMEDAATAEVSRSQLWQWCKHGVSTAD-GKKVD 477
                      ************************9999************************************************************.8**** PP

                      HHHHHHHHHHHCCHHHHHHHCCTTHHHCHHHHHHHHHTTTCCC-CHHHHHCCH CS
  Malate_synthase 473 lelmaklvdeenarleelgkedeayreaakllkkeataeefadfltlkaykel 525
                      + +  kl++e++++l+++g++ ++++ aa++++ ++t+e+++dflt+++y+e+
       KKY15555.1 478 KSYALKLLKEQADELASKGPKGNKFHLAAQYFAGQVTGEDYSDFLTTLLYNEI 530
                      ***************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 3624.72
//
Query:       KKY15556.1  [L=206]
Description: putativebinding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1310.74
//
Query:       KKY15557.1  [L=422]
Description: putative udp-glc gal endoplasmic reticulum nucleotide sugar transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-43  149.6   8.6    1.4e-43  149.2   8.6    1.0  1  UAA             UAA transporter family
    9.5e-05   22.6   5.3    9.5e-05   22.6   5.3    3.3  3  EamA            EamA-like transporter family
    0.00049   19.4   2.7      0.058   12.5   0.1    2.2  2  Nuc_sug_transp  Nucleotide-sugar transporter


Domain annotation for each model (and alignments):
>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.2   8.6   2.4e-47   1.4e-43       1     297 [.      67     400 ..      67     403 .. 0.87

  Alignments for each domain:
  == domain 1  score: 149.2 bits;  conditional E-value: 2.4e-47
         UAA   1 qlllavslvfvgccsnvvllElivkeepkafg...............nlltfvq..flfvalegllesid.....ilkkrkiPlkt....Yvilvalff 73 
                 ql+++v++++ +++s++ l+E+i k+  k+                  +l+ +q  f++++   +l+s +      + k + P k      v+++++  
  KKY15557.1  67 QLAICVLGIYASFLSWALLQERITKTPFKPAStllhpnpdpeyfqypVVLNTIQslFASITGSIYLSSTTsrkgrSALKVVFPTKLilvpLVLVSITSS 165
                 5789*********************777885599**********9999999999666666666666665566554255555555541000455666666 PP

         UAA  74 itsvlnnealkydisvPvhiifrssklipvmilGililgkrYsllqylsvllltlGviiftllsakdkkedskeslnkfllGiallvlallldavlglv 172
                 + s   + +l+  + + + i+++s+kl+pvm+l   i +krY l +y +v+ +tlGv +ftl ++++++++++++ + +  G++ll+++ll+d++++++
  KKY15557.1 166 LASPFGYASLAH-VDYLTYILAKSCKLLPVMFLHLTIFRKRYPLYKYGVVAAVTLGVALFTL-HHPSTASKKSKTSSSSAYGLVLLSINLLFDGLTNTI 262
                 6677789****9.*************************************************.566666888889999********************* PP

         UAA 173 qeklyk...kygkhsk.ealfyshllslplfl..llqgellsavkflsesedval.......lslpsklfylllnvltqyvcikgVlilisefgaltvt 258
                 q+++++   +yg  s  +++  ++l+s+ l+   ll + +l+   ++s s++ +l       +  ps l ++l ++ ++++++ +++++ ++fg+  ++
  KKY15557.1 263 QDHVFStpsRYGFFSGpQMMVAQNLISTFLTSsyLLLTPILPPLPLASPSSSTELsdaisflTRNPSALHDALGFAACGAIGQIFIYMTLNRFGSILLV 361
                 ***9963338**99999**********9998899999***********999999999*9999999********************************** PP

         UAA 259 lvltlRKfvslllSillFknpltlqhlvgtllVflglll 297
                 +v+ +RK++s+llS+l+F++ l+  +++g+ lVf+++ +
  KKY15557.1 362 TVTVTRKMLSMLLSVLWFGKSLSRGQWLGVGLVFGAVGV 400
                 ***********************************9865 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0059        35      98     120 ..      70      92 ..      57     101 .. 0.77
   2 ?    1.6   7.9     0.049   2.9e+02      30     136 ..     113     225 ..     110     226 .. 0.87
   3 !   22.6   5.3   1.6e-08   9.5e-05      59     132 ..     324     398 ..     272     400 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0059
        EamA  98 tslePvftlilsvlllgekltlk 120
                 + +  +++ +ls++ll+e++t++
  KKY15557.1  70 ICVLGIYASFLSWALLQERITKT 92 
                 45556788899999999998875 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.049
        EamA  30 pltltfvrfliagillliiallkegkl......aklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkql 122
                 p+ l+++++l+a+i  +i++  + +++       +++ k +l  l+l  + + la  + + +l +++  +  l+ s   + +++l   +++++  l+++
  KKY15557.1 113 PVVLNTIQSLFASITGSIYLSSTTSRKgrsalkVVFPTKLILVPLVLVSITSSLASPFGYASLAHVDYLTYILAKSCKLLPVMFLHLTIFRKRYPLYKY 211
                 66777778887777777776666666666568778888889999******************************************************* PP

        EamA 123 lgivlillGvllil 136
                   ++ + lGv+l +
  KKY15557.1 212 GVVAAVTLGVALFT 225
                 **********9975 PP

  == domain 3  score: 22.6 bits;  conditional E-value: 1.6e-08
        EamA  59 lslkdwlll.lllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGv 132
                 l++++ +l  +l  + +++++++++++ l++ ++   + +t +  +++++lsvl++g++l+  q+lg++l++ +v
  KKY15557.1 324 LTRNPSALHdALGFAACGAIGQIFIYMTLNRFGSILLVTVTVTRKMLSMLLSVLWFGKSLSRGQWLGVGLVFGAV 398
                 455554444244444799*****************************************************9887 PP

>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   9.8e-06     0.058      75     188 ..     146     255 ..      97     272 .. 0.72
   2 !    6.8   0.4   0.00053       3.2     113     168 ..     362     416 ..     341     421 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.8e-06
  Nuc_sug_transp  75 eilakpkdtlklavPsliYtvqnnllyvalsnLdaatyqvtyqlkilttalfsvllLkrklskkqWlslllLvaGvalvqlkqkeseesekaaaa 169
                      ++ ++  ++ l++ s+   +   + y +l ++d  ty ++   k+l   ++ +++ +++   +++  +  +++Gval  l++ ++ +++++++ 
      KKY15557.1 146 VVFPTKLILVPLVLVSITSSLASPFGYASLAHVDYLTYILAKSCKLLPVMFLHLTIFRKRYPLYKYGVVAAVTLGVALFTLHHPSTASKKSKTS- 239
                     45554555555556666666777778****************************************************9998877766555433. PP

  Nuc_sug_transp 170 akeensvlGliavlaacll 188
                        ++s +Gl+ + +  l 
      KKY15557.1 240 ---SSSAYGLVLLSINLLF 255
                     ...4567777666665555 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00053
  Nuc_sug_transp 113 qvtyqlkilttalfsvllLkrklskkqWlslllLvaGvalvqlkqkeseesekaaa 168
                     +vt   k+l+  l+svl  +++ls+ qWl + l++  v +  + q +++ ++++++
      KKY15557.1 362 TVTVTRKMLS-MLLSVLWFGKSLSRGQWLGVGLVFGAVGVEGWIQRKEKLAKQKKQ 416
                     5666667776.5889***************99988777765555555555444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 2642.04
//
Query:       KKY15558.1  [L=465]
Description: putative alpha-l-rhamnosidase c [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-36  122.3   1.4    6.9e-36  122.3   1.4    2.0  2  DUF2985          Protein of unknown function (DUF2985)
  ------ inclusion threshold ------
        9.4    6.3   7.0        1.2    9.2   0.2    2.2  2  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> DUF2985  Protein of unknown function (DUF2985)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3   1.4   7.7e-40   6.9e-36       1      78 []     172     255 ..     172     255 .. 0.96
   2 ?   -1.8   1.3       0.4   3.6e+03       9      33 ..     348     363 ..     341     399 .. 0.58

  Alignments for each domain:
  == domain 1  score: 122.3 bits;  conditional E-value: 7.7e-40
     DUF2985   1 kfvktplgflvtiYglnvvawgamlfLlLlgaapamn......insarkkwieidsqilnALFcvtgfglaPwrfrdlylllri 78 
                 +f+ tp+gf+v+iYglnvv wgam+f++Ll+aapam+       +s+rkkwieidsq+lnALFcvtgfgl+Pwrfrdl++ l++
  KKY15558.1 172 RFIWTPFGFVVFIYGLNVVGWGAMIFFVLLNAAPAMChpscdsDDSPRKKWIEIDSQVLNALFCVTGFGLIPWRFRDLWWELHW 255
                 5999*************************************9666**********************************97766 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.4
     DUF2985   9 flvtiYglnvvawgamlfLlLlgaa 33 
                 f+v +Y++n           L  ++
  KKY15558.1 348 FVVWMYVINTL---------LQVVL 363
                 44444443322.........22222 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   2.1      0.16   1.5e+03      40      76 ..     165     201 ..     156     209 .. 0.59
   2 ?    9.2   0.2   0.00013       1.2      52      99 ..     361     413 ..     347     423 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.16
  Phage_holin_3_6  40 lgaagvlallalllllvalalalaalwlaalivaavl 76 
                      +g+ ++  ++  ++ +v ++++l++  ++a+i +++l
       KKY15558.1 165 IGLKAFWRFIWTPFGFVVFIYGLNVVGWGAMIFFVLL 201
                      5555555555566666666777764555666655544 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00013
  Phage_holin_3_6  52 llllvalalalaa......lwla.ali.vaavllvlagvlalvglkklkkakplpe 99 
                      ++l+va++    +      +wl  + i +a  +++lag+l+++  kk+k++++ p 
       KKY15558.1 361 VVLCVAMWN---WnrfnrpSWLQgFAIaLACTVAILAGLLVFIEGKKIKAVEGIPV 413
                      233333332...12335776665244458999******************998664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1188  (0.0662614); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 2976.87
//
Query:       KKY15559.1  [L=375]
Description: hypothetical protein UCRPC4_g06266 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2466.38
//
Query:       KKY15560.1  [L=137]
Description: hypothetical protein UCRPC4_g06267 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 931.83
//
Query:       KKY15561.1  [L=492]
Description: hypothetical protein UCRPC4_g06268 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0014   18.4   5.3      0.054   13.2   5.3    2.4  1  LXG              LXG domain of WXG superfamily
     0.0083   16.5   0.2      0.017   15.4   0.2    1.6  1  DUF2935          Domain of unknown function (DUF2935)
  ------ inclusion threshold ------
      0.013   15.5   1.0      0.082   13.0   0.1    2.4  3  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP
      0.015   15.5   0.2      0.015   15.5   0.2    3.8  4  HMMR_C           Hyaluronan mediated motility receptor C-term
      0.025   14.5   2.8       0.49   10.3   0.8    2.6  2  Sec8_exocyst     Sec8 exocyst complex component specific doma
      0.051   13.8   2.2        8.9    6.6   0.3    3.8  3  WXG100           Proteins of 100 residues with WXG
      0.065   13.6   8.3        1.4    9.4   0.0    4.1  3  LPP              Lipoprotein leucine-zipper
      0.069   13.2   2.8       0.17   12.0   0.2    2.7  2  DUF2730          Protein of unknown function (DUF2730)
       0.12   12.4   0.1       0.12   12.4   0.1    2.8  2  Ax_dynein_light  Axonemal dynein light chain
       0.15   12.0   7.9        2.1    8.2   8.0    2.6  2  Apolipoprotein   Apolipoprotein A1/A4/E domain
       0.16   11.0   2.2       0.28   10.2   1.2    1.8  2  Emaravirus_P4    P4 movement protein of Emaravirus, and the 3
       0.22   11.5   5.1        2.3    8.3   0.2    2.9  2  DUF1664          Protein of unknown function (DUF1664)
       0.26   11.3  14.6      0.023   14.8   5.4    2.9  3  DUF1640          Protein of unknown function (DUF1640)
       0.54    8.1   2.6       0.97    7.3   2.6    1.4  1  Prominin         Prominin
       0.84    9.5   4.5        1.4    8.8   1.2    2.6  2  ACCA             Acetyl co-enzyme A carboxylase carboxyltrans
        1.3    9.5   8.3          8    6.9   0.2    4.7  5  FlaC_arch        Flagella accessory protein C (FlaC)
        2.1    8.8   7.5        2.8    8.4   0.0    3.7  3  Fungal_TACC      Fungal Transforming acidic coiled-coil (TACC
        2.6    7.9  12.1         36    4.2   0.2    4.5  4  DivIC            Septum formation initiator
        5.5    7.1  13.2          1    9.5   1.5    3.3  2  BRE1             BRE1 E3 ubiquitin ligase
        6.4    7.2   8.2        0.6   10.5   0.2    3.0  2  CCDC-167         Coiled-coil domain-containing protein 167


Domain annotation for each model (and alignments):
>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   5.3     6e-05     0.054      77     165 ..     111     195 ..      53     211 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6e-05
         LXG  77 LkkikealesvepssngfidedfLeqelenglkkakevtee.lkdeinkilasvsdivslpelddsevkdslqkakkkvqetiekledfd 165
                   k k+ l+s+ +     ++ d   ++l+++l+k+k++++  l d++ ++++s++ i   + +d+++vkd++q+a+k++++ +e + + +
  KKY15561.1 111 VDKLKNGLHSITTKAPSLLNPDN--KQLADELDKLKNEVARlLRDSVPAVVNSTDGI---SAVDIKKVKDEFQEAQKQMETKLEEISTSE 195
                 45566666666666666666664..35888888888776651577888888888888...********************9999887655 PP

>> DUF2935  Domain of unknown function (DUF2935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   1.9e-05     0.017      22      97 ..     126     217 ..      90     220 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.9e-05
     DUF2935  22 ealldpkekdlikeakefkkeFekllaeavelseglv...................rasseleeavakLneealkltreliqFkkellekvlsck 97 
                  +ll+p +k+l++e++++k+e  +ll++ v +   +v                    a++++e++++++ +  +k  +   ++k+++ ek +sck
  KKY15561.1 126 PSLLNPDNKQLADELDKLKNEVARLLRDSVPA---VVnstdgisavdikkvkdefqEAQKQMETKLEEISTSEIKRFQDAGALKDQIWEKFNSCK 217
                 579**************************996...456789999999999999998888999999999999999999999999999999999987 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   0.00059      0.53      31      79 ..     103     150 ..      57     152 .. 0.67
   2 ?   13.0   0.1   9.1e-05     0.082      32      91 ..     104     163 ..      95     168 .. 0.87
   3 ?   -0.9   0.0       1.7   1.6e+03      49      69 ..     172     192 ..     166     214 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00059
  Baculo_PEP_C  31 qilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnal 79 
                   ++ + l++++d++++ L++++++  sll+  +++l++ l++L++ +++l
    KKY15561.1 103 EV-SRLKSDVDKLKNGLHSITTKAPSLLNPDNKQLADELDKLKNEVARL 150
                   33.5666777777777777777777777777777777777777776665 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 9.1e-05
  Baculo_PEP_C  32 ilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq.dtlrneLtnln 91 
                   + + l++++d++++ L++++++  sll+  +++l++ l++L++ +++l  d++    ++++
    KKY15561.1 104 V-SRLKSDVDKLKNGLHSITTKAPSLLNPDNKQLADELDKLKNEVARLLrDSVPAVVNSTD 163
                   5.7899*****************************************98788888777776 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.7
  Baculo_PEP_C  49 alsedlksllaeldtrldtll 69 
                   +++++++++ ++++t+l++ +
    KKY15561.1 172 KVKDEFQEAQKQMETKLEEIS 192
                   333333333333333333332 PP

>> HMMR_C  Hyaluronan mediated motility receptor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.2   1.7e-05     0.015      68     121 ..      65     121 ..      56     131 .. 0.82
   2 ?    2.8   1.8      0.14   1.3e+02      93     147 ..     129     180 ..     124     189 .. 0.70
   3 ?    2.3   0.6      0.21   1.9e+02     113     150 ..     180     215 ..     165     222 .. 0.63
   4 ?   -1.0   0.7       2.1   1.8e+03       5      41 ..     390     426 ..     364     437 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.7e-05
      HMMR_C  68 nklsdayakllGhqnqk...qkikhvvklkeenselkqevsklrsqlakekqeekkl 121
                  k++d  a+l Gh +     +  k  +  k++  +lk evs+l+s + k k+  + +
  KKY15561.1  65 QKIADLRARLEGHDDEIkaaKSTKFDMAAKNDMPQLKGEVSRLKSDVDKLKNGLHSI 121
                 699**********986511145678899**********************9876655 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.14
      HMMR_C  93 lkeenselkqevsklrsqlakekqeekklkeqlkeakgvrrfdpskafkhesken 147
                 l  +n++l  e+ kl++ +a+  ++   + + +++ +g+   d  k  k e +e 
  KKY15561.1 129 LNPDNKQLADELDKLKNEVARLLRD--SVPAVVNSTDGISAVDI-KKVKDEFQEA 180
                 56799**************997654..45566666666666666.4445555554 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.21
      HMMR_C 113 kekqeekklkeqlkeakgvrrfdpskafkheskenvep 150
                  +kq e+kl+e   +   ++rf  + a+k +  e ++ 
  KKY15561.1 180 AQKQMETKLEEI--STSEIKRFQDAGALKDQIWEKFNS 215
                 345555555544..234689999999999887776654 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 2.1
      HMMR_C   5 eeeeqrkaekeetldelkeevkkWrklyeellnkvkP 41 
                  + e +k++ke++l++ ++e k    + e+  n v+P
  KKY15561.1 390 TQVEPQKKTKEDHLHSNNQESKLRDPVPENTANPVQP 426
                 3334445555555665666655555566666666666 PP

>> Sec8_exocyst  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.092        82      71     114 ..      50      93 ..      46     116 .. 0.82
   2 ?   10.3   0.8   0.00055      0.49       2      90 ..     136     222 ..     135     246 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.092
  Sec8_exocyst  71 iasYskilssiqesqekvselKesleeakkklstkkkeLkelna 114
                   ++ ++  +  iq  q+k+++l+ +le    ++++ k++  +++a
    KKY15561.1  50 VKDHKPCVADIQGIQQKIADLRARLEGHDDEIKAAKSTKFDMAA 93 
                   5667778899999***************9999988876655554 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00055
  Sec8_exocyst   2 LkevlnkikeeWpavlsddanpvelalsllDd.ssvGlahrlkefkqlkkqieeaLqevvnehhqaFnssiasYskilssiqesqekvse 90 
                   L ++l+k+k+e +++l+d+++ v    ++ D  s+v   +  +ef++ +kq+e++L+e+     + F ++ a   +i +++++++e +++
    KKY15561.1 136 LADELDKLKNEVARLLRDSVPAVV---NSTDGiSAVDIKKVKDEFQEAQKQMETKLEEISTSEIKRFQDAGALKDQIWEKFNSCKELLED 222
                   778888999999999998887775...5555426677888889**************************999999999999999987665 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.41   3.6e+02      51      79 ..      58      86 ..      53      91 .. 0.76
   2 ?    1.7   0.0      0.35   3.1e+02      21      40 ..      98     117 ..      91     125 .. 0.77
   3 ?    6.6   0.3    0.0099       8.9      35      72 ..     156     193 ..     129     197 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.41
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100 51 aefeewkqaaqklvdaLeeisealkqaan 79
                a ++ ++q++++l + Le++ +++k+a++
  KKY15561.1 58 ADIQGIQQKIADLRARLEGHDDEIKAAKS 86
                55677888888888888888888887765 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.35
                 HHHHHHHHHHHHHHHHCGCG CS
      WXG100  21 eeledelqrlkaevdalqsg 40 
                  +l++e++rlk++vd+l++g
  KKY15561.1  98 PQLKGEVSRLKSDVDKLKNG 117
                 57888999999999988664 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0099
                 HHCGCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  35 dalqsgWsGaaadafqaefeewkqaaqklvdaLeeise 72 
                  a+ ++  G +a+  +++ +e+++a++++ ++Leeis 
  KKY15561.1 156 PAVVNSTDGISAVDIKKVKDEFQEAQKQMETKLEEIST 193
                 33344667889999999999***************986 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.33   2.9e+02       7      34 ..      58      85 ..      57      87 .. 0.92
   2 ?    9.4   0.0    0.0015       1.4       2      29 ..      97     124 ..      96     130 .. 0.82
   3 ?    3.0   1.9      0.15   1.4e+02       3      29 ..     134     176 ..     127     190 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.33
         LPP  7 sqVsqLkskvdqlssdvnsakaaaqaak 34
                ++++  ++k++ l + ++   ++++aak
  KKY15561.1 58 ADIQGIQQKIADLRARLEGHDDEIKAAK 85
                58999********************998 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0015
         LPP   2 ldeLssqVsqLkskvdqlssdvnsakaa 29 
                 + +L  +Vs+Lks+vd+l++ + s+ + 
  KKY15561.1  97 MPQLKGEVSRLKSDVDKLKNGLHSITTK 124
                 5688899999999999999988887665 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.15
         LPP   3 deLssqVsqLkskvdqlssd................vnsakaa 29 
                 ++L++++ +Lk++v+ l  d                ++++k++
  KKY15561.1 134 KQLADELDKLKNEVARLLRDsvpavvnstdgisavdIKKVKDE 176
                 4677777777777777777777777555444444444444444 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   0.00019      0.17      35      97 ..      67     129 ..      56     136 .. 0.79
   2 ?   -0.2   0.1       1.2   1.1e+03      34      59 ..     169     191 ..     165     201 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00019
     DUF2730  35 leklaekveendkrlteletkvenLPtakdlekLkllladlrgelkaleaevrqlshqvdLLL 97 
                 ++ l   +e +d  +++++++  ++  ++d+ +Lk +++ l+ ++++l++ ++++ +++  LL
  KKY15561.1  67 IADLRARLEGHDDEIKAAKSTKFDMAAKNDMPQLKGEVSRLKSDVDKLKNGLHSITTKAPSLL 129
                 4445555666677777777777789999***************************99987776 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.2
     DUF2730  34 dleklaekveendkrlteletkvenL 59 
                 d++k++++ +e +k+   +etk+e++
  KKY15561.1 169 DIKKVKDEFQEAQKQ---METKLEEI 191
                 455555555544443...44555444 PP

>> Ax_dynein_light  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00013      0.12     116     180 ..      85     149 ..      77     153 .. 0.86
   2 ?   -0.9   2.5       1.5   1.4e+03     132     169 ..     171     208 ..     161     242 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00013
  Ax_dynein_light 116 qaeqgkselekkikeLeeekeelekqvaelkaklealekrekerrqeeekkheeeieflkksnqq 180
                      ++ +     ++++ +L+ e+++l++ v +lk+ l ++  ++   ++ ++k+ ++e+++lk++  +
       KKY15561.1  85 KSTKFDMAAKNDMPQLKGEVSRLKSDVDKLKNGLHSITTKAPSLLNPDNKQLADELDKLKNEVAR 149
                      455555556677999*********************************************98665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.5
  Ax_dynein_light 132 eeekeelekqvaelkaklealekrekerrqeeekkhee 169
                      ++ k+e+++  +++++kle++  +e +r q     +++
       KKY15561.1 171 KKVKDEFQEAQKQMETKLEEISTSEIKRFQDAGALKDQ 208
                      44445555555555555555555555555544444444 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.026        23     128     157 ..      61      90 ..      42      95 .. 0.74
   2 ?    8.2   8.0    0.0024       2.1      64     171 ..      63     192 ..      60     249 .. 0.51

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.026
                     HHHHHHHHHHHH-----..-----SSSHHH CS
  Apolipoprotein 128 qklaerleelkeslaphaeeveerlssrve 157
                     q++++++ +l+ +l+ h +e++++ s + +
      KKY15561.1  61 QGIQQKIADLRARLEGHDDEIKAAKSTKFD 90 
                     567888888888888888888877666655 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0024
                     CCHHHHHHHHHCCHHHHHHHH........HHHHCHHCCHHCHCCHCHH...HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..- CS
  Apolipoprotein  64 lgqnleelrqrlapyteelre........rlaadaeelqeqlavyaee...lrerlerhvealkarlapyveelrqklaerleelkeslaphaee 147
                     ++q++ +lr+rl+ + +e+++         ++ d+ +l+  ++  + +   l+++l + + +  + l p+  +l ++l++   e+ + l++++ +
      KKY15561.1  63 IQQKIADLRARLEGHDDEIKAakstkfdmAAKNDMPQLKGEVSRLKSDvdkLKNGLHSITTKAPSLLNPDNKQLADELDKLKNEVARLLRDSVPA 157
                     55666666666666666666644444444222333333322222222122244444444444455555555555544444444444444444332 PP

                     --...........--SSSHHHHHHHTS-TTSHHHH CS
  Apolipoprotein 148 ve...........erlssrveelrekleeqaeelr 171
                     v             ++ ++ +e+++++e+++ee+ 
      KKY15561.1 158 VVnstdgisavdiKKVKDEFQEAQKQMETKLEEIS 192
                     22222333344455666666666666666666543 PP

>> Emaravirus_P4  P4 movement protein of Emaravirus, and the 30K superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   1.3      0.01         9     256     314 ..     138     196 ..      87     218 .. 0.74
   2 ?   10.2   1.2   0.00031      0.28     207     315 ..     153     255 ..     129     268 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.01
  Emaravirus_P4 256 qglnkvkaklkedtssstlllidsekrveaiklkliqdeiseakaklsealagidlaii 314
                    + l+k+k+ +      s   +++s+  + a+ +k+++de+ ea+ ++   l  i  + i
     KKY15561.1 138 DELDKLKNEVARLLRDSVPAVVNSTDGISAVDIKKVKDEFQEAQKQMETKLEEISTSEI 196
                    4688889988888899999999**********************999887766554444 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00031
  Emaravirus_P4 207 kslpaevalmsgksnflkvksyldkkynerkeallqleeisnaliwgsdqglnkvkaklkedtssstlllidsekrveaiklkliqdeiseakakl 302
                     s+pa v    g s    +k+  d   + +k+   +leeis + i    q    +k+++ e  +s + ll d + +    + + i+    + +a+l
     KKY15561.1 153 DSVPAVVNSTDGISA-VDIKKVKDEFQEAQKQMETKLEEISTSEIKR-FQDAGALKDQIWEKFNSCKELLEDDKFQ----QWREIRRRHEHNRAEL 242
                    567777777777765.46888888888889999999*****999875.4556689999**********99997654....5788999999999*** PP

  Emaravirus_P4 303 sealagidlaiie 315
                    ++ l+g dl +i 
     KKY15561.1 243 ASVLSGADLPAIF 255
                    ********98885 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.2    0.0025       2.3      57     116 ..      63     124 ..      57     135 .. 0.67
   2 ?    3.9   0.6     0.056        50      39      80 ..     151     193 ..     147     221 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0025
     DUF1664  57 laatkrhLssridrvdkkldeqkeis..keikeevtevredlseigedvesvkeaveglesk 116
                 +++   +L +r++  d+++++ k ++   + k+++ ++++++s++++dv+++k+  +++ +k
  KKY15561.1  63 IQQKIADLRARLEGHDDEIKAAKSTKfdMAAKNDMPQLKGEVSRLKSDVDKLKNGLHSITTK 124
                 44445567777777777776665554114556778888888888888888888777766665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.056
     DUF1664  39 lsdavesvskqleqvse.slaatkrhLssridrvdkkldeqke 80 
                 l+d v  v ++ + +s+ +++++k+++++  +++++kl+e + 
  KKY15561.1 151 LRDSVPAVVNSTDGISAvDIKKVKDEFQEAQKQMETKLEEIST 193
                 6666667777777776436777777777777777777777654 PP

>> DUF1640  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00046      0.41      65     101 ..      88     124 ..      58     130 .. 0.78
   2 ?   14.8   5.4   2.5e-05     0.023      48     135 ..     100     209 ..      90     232 .. 0.70
   3 ?   -2.4   0.7       4.7   4.2e+03      47      78 ..     365     396 ..     355     421 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00046
     DUF1640  65 evqisersefaalrseteklqreleklkqkLreeidk 101
                 +  + +++++ +l+ e  +l+++++klk+ L + ++k
  KKY15561.1  88 KFDMAAKNDMPQLKGEVSRLKSDVDKLKNGLHSITTK 124
                 444556***********************99876665 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 2.5e-05
     DUF1640  48 lekseylqkaalselrkevqisersefaalrseteklqreleklkqk....Lreeidkl...kadir.ldlnleKgrireelakleakiqelnnk.... 134
                 l+ +  + k+++++l++ + + + +  ++l  ++++l  el+klk++    Lr+ +  +   +++i  +d+ + K + +e ++++e k++e+++     
  KKY15561.1 100 LKGEVSRLKSDVDKLKNGLHSITTKAPSLLNPDNKQLADELDKLKNEvarlLRDSVPAVvnsTDGISaVDIKKVKDEFQEAQKQMETKLEEISTSeikr 198
                 455667889999999999999999999999999999999999999984444555554441114554459999999999999999999998886543334 PP

     DUF1640 135 ..........i 135
                           i
  KKY15561.1 199 fqdagalkdqI 209
                 44444433334 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.7
     DUF1640  47 elekseylqkaalselrkevqisersefaalr 78 
                  + k+e++++  ++ l k+    ++++++  +
  KKY15561.1 365 SQPKQELQMRGPFQRLSKDQHLKQDTQVEPQK 396
                 45566666666666666666666666655433 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   2.6    0.0011      0.97     266     407 ..      64     202 ..      48     227 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0011
    Prominin 266 rksgsqLrdglrgvkrdlnqalsnlCqseeCskilssleiekldtskcldqlpnvdevlealeevletnlssivkeglarlneipekvknqtaevvpdl 364
                 +++ ++Lr+ l+g+ ++++ a s +        +++++ + k ++s+  + ++++++ l+++++   + l+   k+  ++l+++++ v++ +++ vp +
  KKY15561.1  64 QQKIADLRARLEGHDDEIKAAKSTKFD----MAAKNDMPQLKGEVSRLKSDVDKLKNGLHSITTKAPSLLNPDNKQLADELDKLKNEVARLLRDSVPAV 158
                 455555555555555555555444333....22223333333344444466666666666666666666666677777777888888888888888877 PP

    Prominin 365 kkalakgre.qikklakkiprealdavisdle.nterssktfddv 407
                  ++ + +++  ikk++ ++ +ea +++  +le  + +++k+f+d 
  KKY15561.1 159 VNSTDGISAvDIKKVKDEF-QEAQKQMETKLEeISTSEIKRFQDA 202
                 7777776643677777777.7777777777774444556666654 PP

>> ACCA  Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.65   5.8e+02      16      42 ..      87     113 ..      54     126 .. 0.44
   2 ?    8.8   1.2    0.0015       1.4      27      89 ..     164     226 ..     133     231 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.65
        ACCA  16 eelkklaeesevdlseeieklekklek 42 
                 ++++ +a+++  +l+ e+++l++ ++k
  KKY15561.1  87 TKFDMAAKNDMPQLKGEVSRLKSDVDK 113
                 111112222222344444444444444 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0015
        ACCA  27 vdlseeieklekkleklkkeiyknltpwqkvqlaRhpeRpktldyiealfedfvelhGDrafa 89 
                    + +i+k+++++++++k++ ++l+++ + ++ R ++   ++d i + f+   el  D++f+
  KKY15561.1 164 GISAVDIKKVKDEFQEAQKQMETKLEEISTSEIKRFQDAGALKDQIWEKFNSCKELLEDDKFQ 226
                 2256789***********************************************999999886 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       3.7   3.4e+03       5      22 ..      63      80 ..      58      92 .. 0.50
   2 ?    4.3   0.0      0.06        54       7      33 ..      95     121 ..      87     130 .. 0.74
   3 ?    6.9   0.2    0.0089         8       2      41 ..     111     151 ..     111     152 .. 0.80
   4 ?    1.3   0.1      0.53   4.8e+02       4      12 ..     183     191 ..     163     208 .. 0.62
   5 ?   -1.1   0.1         3   2.7e+03      15      30 ..     272     287 ..     265     289 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.7
   FlaC_arch  5 lEnklsklsteletvkke 22
                +++k+ +l  +le   +e
  KKY15561.1 63 IQQKIADLRARLEGHDDE 80
                333333333333333333 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.06
   FlaC_arch   7 nklsklsteletvkkeneelsksveel 33 
                 n++++l+ e++ +k++ ++l++ ++ +
  KKY15561.1  95 NDMPQLKGEVSRLKSDVDKLKNGLHSI 121
                 677777777777777777777777666 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0089
   FlaC_arch   2 idelEnklsklstelet.vkkeneelsksveelkenVkdll 41 
                 +d+l n l ++ t+  + +  +n++l +++++lk +V +ll
  KKY15561.1 111 VDKLKNGLHSITTKAPSlLNPDNKQLADELDKLKNEVARLL 151
                 6777888888888654415779****************998 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.53
   FlaC_arch   4 elEnklskl 12 
                 ++E+kl+++
  KKY15561.1 183 QMETKLEEI 191
                 344444444 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 3
   FlaC_arch  15 eletvkkeneelsksv 30 
                 ++++v+++ +++s+sv
  KKY15561.1 272 RVKNVEETSKDISSSV 287
                 6777777777777776 PP

>> Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0032       2.8      25      66 ..      81     123 ..      74     130 .. 0.80
   2 ?    2.1   0.1      0.31   2.8e+02      43      62 ..     129     148 ..     122     153 .. 0.79
   3 ?    0.1   1.0       1.2   1.1e+03      34      61 ..     182     209 ..     167     233 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0032
  Fungal_TACC  25 Vkllk.kgyeakyqkkldklelenkslkqeieqLkkqleaerk 66 
                  +k  k +++++  ++++ +l+ e ++lk+++++Lk+ l++ ++
   KKY15561.1  81 IKAAKsTKFDMAAKNDMPQLKGEVSRLKSDVDKLKNGLHSITT 123
                  555552579***************************9987665 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.31
  Fungal_TACC  43 lelenkslkqeieqLkkqle 62 
                  l+ +nk+l++e+++Lk++++
   KKY15561.1 129 LNPDNKQLADELDKLKNEVA 148
                  67789999999999998764 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.2
  Fungal_TACC  34 akyqkkldklelenkslkqeieqLkkql 61 
                  ++ ++kl+++++ + +  q+   Lk+q+
   KKY15561.1 182 KQMETKLEEISTSEIKRFQDAGALKDQI 209
                  3445556666666656666666666665 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2      0.04        36      25      52 ..      59      86 ..      49      94 .. 0.70
   2 ?    4.0   0.0     0.048        43      31      61 ..      95     125 ..      91     130 .. 0.73
   3 ?    2.8   0.5      0.11        99      33      50 ..     133     150 ..     128     154 .. 0.47
   4 ?    1.5   0.5      0.28   2.5e+02      17      46 ..     168     195 ..     165     217 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.04
                HHHHHHHHHHHHHHHHHHHHHHHCC-XX CS
       DivIC 25 eiaalqaelaklkaeneeLeaevkdLks 52
                +i+ +q+++a l+a+ e  ++e+k  ks
  KKY15561.1 59 DIQGIQQKIADLRARLEGHDDEIKAAKS 86
                5666677777777777777777766654 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.048
                 HHHHHHHHHHHHHHHHHCC-XXXXXXXXXXX CS
       DivIC  31 aelaklkaeneeLeaevkdLksdedyieerA 61 
                 +++ +lk e  +L++ v++Lk++   i+ +A
  KKY15561.1  95 NDMPQLKGEVSRLKSDVDKLKNGLHSITTKA 125
                 5666788888888888888888777666655 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHCC- CS
       DivIC  33 laklkaeneeLeaevkdL 50 
                 +++l +e ++L+ ev++L
  KKY15561.1 133 NKQLADELDKLKNEVARL 150
                 344444444444444433 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.28
                 XHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  17 laykqlkqeiaalqaelaklkaeneeLeae 46 
                 +++k++k e ++ q++++++ +e+    +e
  KKY15561.1 168 VDIKKVKDEFQEAQKQMETKLEEIST--SE 195
                 78999999999999999998887753..44 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.5    0.0011         1      22      81 ..      56     121 ..      43     146 .. 0.82
   2 ?    4.0   1.2     0.059        53       5      31 ..     170     196 ..     168     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0011
        BRE1  22 kvkeltileekklrleaekakadqkyfaamrskdal..enelkkLnkllsKsselieqLke....l 81 
                  v++++  ++k++ l a  +  d +++aa+  k ++  +n++ +L+  +s+ ++ +++Lk+    +
  KKY15561.1  56 CVADIQGIQQKIADLRARLEGHDDEIKAAKSTKFDMaaKNDMPQLKGEVSRLKSDVDKLKNglhsI 121
                 5789999**********************988865522789999****************954431 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.059
        BRE1   5 Lvklekafeelseqlskkvkeltilee 31 
                 ++k++ +f+e+++q+++k++e++  e 
  KKY15561.1 170 IKKVKDEFQEAQKQMETKLEEISTSEI 196
                 789999**************9998875 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00067       0.6       3      61 ..      57     121 ..      55     151 .. 0.86
   2 ?   -1.9   2.9       5.1   4.5e+03       9      26 ..     177     194 ..     161     246 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00067
    CCDC-167   3 aseIdkleeklascrerLeaverrlrkeelseee......ResleeEeaslkeqleenekeLksL 61 
                 + +I+++++k+a++r rLe  + +++ ++ ++ +        +l+ E + lk+++++  + L+s+
  KKY15561.1  57 VADIQGIQQKIADLRARLEGHDDEIKAAKSTKFDmaakndMPQLKGEVSRLKSDVDKLKNGLHSI 121
                 578********************999999888776676667777889999999999999988865 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 5.1
    CCDC-167   9 leeklascrerLeaverr 26 
                  +e+ ++++ +Le++ ++
  KKY15561.1 177 FQEAQKQMETKLEEISTS 194
                 334444444444444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1855  (0.103464); expected 358.6 (0.02)
Passed bias filter:                      665  (0.0370907); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.53
# Mc/sec: 2770.58
//
Query:       KKY15562.1  [L=1411]
Description: putative transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-35  122.9   0.9    3.6e-35  121.6   0.2    2.0  2  VASt      VAD1 Analog of StAR-related lipid transfer domain
    9.2e-18   64.8   0.2    2.2e-17   63.6   0.2    1.6  1  BAR_3     BAR domain of APPL family
    1.1e-06   29.1   0.2    1.3e-05   25.7   0.2    2.7  2  PH        PH domain
     0.0012   18.7   0.0     0.0029   17.5   0.0    1.5  1  GRAM      GRAM domain
     0.0052   16.5   0.3     0.0052   16.5   0.3    1.6  2  BAR       BAR domain


Domain annotation for each model (and alignments):
>> VASt  VAD1 Analog of StAR-related lipid transfer domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.6   0.2     1e-38   3.6e-35       3     153 ..     949    1094 ..     947    1095 .. 0.94
   2 ?   -1.7   0.0      0.95   3.4e+03      99     114 ..    1258    1273 ..    1240    1284 .. 0.77

  Alignments for each domain:
  == domain 1  score: 121.6 bits;  conditional E-value: 1e-38
                  EEEEESS-HHHHHHHHHSS-THHHHHHHHH.TT-BS-H.HHSE.........EEEEEEEE--SSSS.-SEEEEEEEEE..EEEEET.TEEEEEEEEE CS
        VASt    3 veevlpisvkalfellfgdkseflkkfleerqkttdisvgpweeakekgkltRklsytkplkgsig.pkqtkvtetqtilveeddl.yyivvvtttk 97  
                  +e+++++s+kalf++lfgdks +++ +++er + +di++gpw + ++ g+++R+++y+++ ++ +g  ++++v+++q+++v +d+l y   vvt+++
  KKY15562.1  949 AEKKFEVSPKALFHVLFGDKSAVWQLLQHER-NAHDIRQGPWVSLDK-GHFRREFEYIVDSSDLFGrTQKVDVRDYQVVDVMNDHLcY---VVTDKR 1040
                  6889**************************9.**********98887.*****************989******************88...****** PP

                  -T.TSTTTTSEEEEEEEEEEEETTTE..E.EEEEEEEEEESS.--T.THHHHHHHHHH CS
        VASt   98 tpldvPygdsFsvetryvitwgsknskstcrltvstkvefsk.ssw.lkgiIekgalk 153 
                  t++++Py+ +F+++++ vit+++   ks+++l+++tkve++  + + l g+I+++a++
  KKY15562.1 1041 TAWHLPYKRHFRLVSKLVITHVA---KSKSKLAIFTKVEWLHhP-FiLEGVITSQAMN 1094
                  *********************66...4567***********945.55********996 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.95
                  T.TSTTTTSEEEEEEE CS
        VASt   99 pldvPygdsFsvetry 114 
                    ++P+ d+F+++t +
  KKY15562.1 1258 SSNIPLTDTFNINTTT 1273
                  5589********9976 PP

>> BAR_3  BAR domain of APPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.2   6.1e-21   2.2e-17       3     171 ..      22     193 ..      20     211 .. 0.92

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 6.1e-21
       BAR_3   3 feeclkDSPkfResleevEaeleelekklkkllKlckrlieagkaysaaqkqfaqs.Lrelkkes..kgdeetdesLkkfsellqelenehtilldqaq 98 
                 ++e+ +DSP fR++ + + + +e +ek+l++ l++  r++    ++ +  ++f+++ +  ++      + ++   ++++ se+ +       +ll++++
  KKY15562.1  22 LKEAALDSPTFRATTQHFGDQVELVEKWLEEYLRSAIRVVGEVGTLETILNSFMSHaMLPMNVSEavVDHDYSVLAMRRYSESAKDFWASTFTLLKKTN 120
                 789***********************************************9998762333444444466666669************************ PP

       BAR_3  99 rsikkpLekFrkedlkevkekkkkFdkesekleaaleknaqlskkkkeseleeadnelkatrkkfhqasldyv 171
                   +++p+++F+ +dl+ +ke+kk  +  +  +++ ++++++  k k++s l+e + +l ++rk + ++s+d +
  KKY15562.1 121 VLVIEPIKSFLNNDLRGFKEAKKTLETNQRYYDSVQARYSSQAKAKEPSALREDAFQLHEARKAYLKSSMDFC 193
                 **********************************************************************987 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.2   3.5e-09   1.3e-05       2      99 ..     308     401 ..     307     406 .. 0.82
   2 ?   -0.6   0.0      0.54   1.9e+03      25      73 ..     771     812 ..     756     829 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 3.5e-09
                 EEEEE..EEEETSSSSC.SEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHH CS
          PH   2 vkeGw..Llkkgsgkkk.swkkrwfvLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqasseeerkeWi 97 
                 +k+Gw  L  ++++++   w +rw+++k++ + +  +++++   e  + i +  c ++      +++r+fcfe++++    ++   +qa+++ e++eW+
  KKY15562.1 308 EKQGWlnLRTYTGKPARtMWVRRWAFVKNGIFGWLIQSSRSGGVEESERIGVLLCNIRPA---GQEERRFCFEIKTK----KTAMMIQAETQNELSEWL 399
                 799**7666888888889**********77744444445568888888899999999974...4**********999....69***************9 PP

                 HH CS
          PH  98 ka 99 
                 + 
  KKY15562.1 400 SV 401
                 86 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.54
                 EETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEE CS
          PH  25 Lkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfelr 73 
                 ++++++++y+n+       +++s+ l+++  v    t+ p+r++ f + 
  KKY15562.1 771 VTTEDIYFYSNH---LGLVLTTSVTLKSIAEV----TAAPGRDCDFLFL 812
                 455889*****9...99999999999999998....5689999888874 PP

>> GRAM  GRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     8e-07    0.0029       3      68 ..     736     802 ..     734     808 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 8e-07
                 HHHHS----TT--EEEEEEEEEESS..SEEEEEEEEESSEEEEEE-STT---EEEEEGGGEEEEEE. CS
        GRAM   3 frkkfkellpeEkllatykCyllrdg.gpvqGrlyltnyrlcFrskplgsskkvvlpladikrieks 68 
                 fr  f ++  eEkl+  ++++ +++      Gr y+t+  ++F+s+ lg   +  ++l++i ++   
  KKY15562.1 736 FRLLFPNVGREEKLVLVFRATWNPNDqQEFPGRAYVTTEDIYFYSNHLGLVLTTSVTLKSIAEVTAA 802
                 55566667789**********9998778899********************9999999999999765 PP

>> BAR  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.3   1.4e-06    0.0052     103     202 ..     103     207 ..      81     216 .. 0.85
   2 ?   -3.4   0.1       1.6   5.9e+03     177     206 ..     243     272 ..     228     283 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.4e-06
         BAR 103 eavkklaqteeelekrvetnfldplrellekefkeiqkerkklehkrlDyDaakarlkklktkkskkakde.....ekaeeelrkAqqkfeesneelka 196
                 e  k+    + +l k+++  +++p++ +l+++++  +++ k le+ +  yD+ +ar+ +  ++k+ +a  e     ++a++ + k++  f  ++ +l++
  KKY15562.1 103 ESAKDFWASTFTLLKKTNVLVIEPIKSFLNNDLRGFKEAKKTLETNQRYYDSVQARYSSQAKAKEPSALREdafqlHEARKAYLKSSMDFCVLAPQLRT 201
                 55555545555688999999**************************************99999999988778899999999999999999999999999 PP

         BAR 197 eLpnll 202
                  L++l+
  KKY15562.1 202 ALDKLM 207
                 999885 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.6
         BAR 177 eeelrkAqqkfeesneelkaeLpnllalev 206
                 ++e++ ++++f +  + ++++L+++ ++ +
  KKY15562.1 243 TREMEGSEKAFRRELQAARRQLEDIAESTA 272
                 567777777777777777777777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.53
# Mc/sec: 7965.36
//
Query:       KKY15563.1  [L=619]
Description: putative ribosome biogenesis protein kri1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-30  104.5   0.3    2.6e-30  104.5   0.3    4.3  5  Kri1_C      KRI1-like family C-terminal
    7.2e-26   90.7  20.6    7.2e-26   90.7  20.6    5.3  6  Kri1        KRI1-like family


Domain annotation for each model (and alignments):
>> Kri1_C  KRI1-like family C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   7.1         2   1.8e+04      66      86 ..     304     324 ..     263     334 .. 0.67
   2 ?   -3.4   1.0       1.3   1.2e+04      67      78 ..     401     412 ..     395     417 .. 0.54
   3 ?   -5.0   2.5         2   1.8e+04      68      78 ..     457     467 ..     451     474 .. 0.37
   4 !  104.5   0.3   2.9e-34   2.6e-30       2      88 ..     476     562 ..     475     563 .. 0.93
   5 ?   -2.9   0.5      0.89     8e+03      74      88 ..     601     615 ..     593     616 .. 0.61

  Alignments for each domain:
  == domain 1  score: -4.4 bits;  conditional E-value: 2
      Kri1_C  66 kekkkkdkkklkkkkrlrewr 86 
                 +++kk+d +k k+++ ++e++
  KKY15563.1 304 TRQKKRDAEKAKQEAANKELK 324
                 234555555556666666655 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.3
      Kri1_C  67 ekkkkdkkklkk 78 
                 e++k++kkklkk
  KKY15563.1 401 EEDKSKKKKLKK 412
                 334444444444 PP

  == domain 3  score: -5.0 bits;  conditional E-value: 2
      Kri1_C  68 kkkkdkkklkk 78 
                 k+ k+++  +k
  KKY15563.1 457 KELKKQRAEQK 467
                 22222222222 PP

  == domain 4  score: 104.5 bits;  conditional E-value: 2.9e-34
      Kri1_C   2 kleelvdeyykldledvig.dlkvrFkYrevspesFgLtareILladDkeLnefvglkklapYrdkekkkkdkkklkkkkrlrewrke 88 
                 k+e++vd++ k++l    g + +  F+Yre sp ++gLtar+IL+adD++Ln+f+glkkla++rd+ekk kd+kkl+kk+rlr+wrk+
  KKY15563.1 476 KIEQIVDDQLKFELPF-SGtKSTGGFRYRESSPVTYGLTARDILMADDSQLNQFAGLKKLASFRDPEKKSKDQKKLGKKARLRQWRKD 562
                 89*******8888874.4438899**************************************************************97 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 0.89
      Kri1_C  74 kklkkkkrlrewrke 88 
                 ++ ++kkr r+++k+
  KKY15563.1 601 REGSQKKRRRSKKKK 615
                 555566666666555 PP

>> Kri1  KRI1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   2.1      0.07   6.3e+02       8      89 ..      37     137 ..      31     149 .. 0.64
   2 ?   -2.7   0.4         1   9.2e+03      30      37 ..     177     184 ..     156     215 .. 0.50
   3 ?   -1.8   1.9      0.51   4.6e+03       5      38 ..     257     298 ..     253     316 .. 0.54
   4 !   90.7  20.6   8.1e-30   7.2e-26       2     103 .]     315     429 ..     312     429 .. 0.95
   5 ?    1.8   1.9     0.039   3.5e+02       9      36 ..     454     481 ..     450     498 .. 0.64
   6 ?   -2.7   1.1      0.97   8.7e+03       3      23 ..     542     562 ..     540     567 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.07
        Kri1   8 eekkeelkrlkklkreeieeklekikkaageeeaalkeleeeeledlldgdfDpekwdrkmkklFge.............eyyaeede.........ee 84 
                 ++k+eel+rl   k    ++k ++ +   g+ e++ +e +++e+ed  +++   e  d+++++  +               +y + ++         e+
  KKY15563.1  37 NKKREELRRLED-KFGSSAKKRKRANGDEGS-ESQ-SEGSSSESEDDSEAELATETLDAEIQATLNAiktkdprvydksiTFYTQLEDgadgpstkaEK 132
                 577888888854.555555666666666663.333.344455555555999999999999988888766666665555555555544466666666666 PP

        Kri1  85 kkPkw 89 
                 +kP +
  KKY15563.1 133 EKPLF 137
                 66666 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1
        Kri1  30 ekikkaag 37 
                 ++i+ aa 
  KKY15563.1 177 KQIHDAAA 184
                 22222222 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.51
        Kri1   5 eekeekkeelkrlkklkreeieeklekikkaag........e 38 
                 ee+e++ e  ++  +l+ e+ ++  ek+ + a         +
  KKY15563.1 257 EEEERRAEVFEEAYNLRFEDPTKSNEKLMSHARdlaskysvR 298
                 666666666677777777777777777666666333333220 PP

  == domain 4  score: 90.7 bits;  conditional E-value: 8.1e-30
        Kri1   2 rkeeekeekkeelkrlkklkreeieeklekikkaageeeaalkeleeeeledlldgdfDpekwdrkmkklFgeeyyaeede................ee 84 
                 ++e++++e kee++rl+kl++ee+eek+++ik+aag    + k l+++ +++++d+d+D+++wd++m+k Fge+yya+ed+                + 
  KKY15563.1 315 KQEAANKELKEEKARLRKLRIEEMEEKIRRIKRAAG---ISHKTLDDKAWSKFVDNDWDDSRWDQEMAKHFGEDYYAAEDAvsdeasgdeedkskkkKL 410
                 678899999***************************...555899999******************************999***************999 PP

        Kri1  85 kkPkwdddidikdivpdde 103
                 kkPkwdddidikd++pd+e
  KKY15563.1 411 KKPKWDDDIDIKDLIPDFE 429
                 ****************986 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.039
        Kri1   9 ekkeelkrlkklkreeieeklekikkaa 36 
                 +  +elk++++ +++ ++ + +ki++++
  KKY15563.1 454 KSSKELKKQRAEQKKAARIERQKIEQIV 481
                 4445566666666666665666665554 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 0.97
        Kri1   3 keeekeekkeelkrlkklkre 23 
                 k+++ ++k  +++rl++ +++
  KKY15563.1 542 KKSKDQKKLGKKARLRQWRKD 562
                 667777888888888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2424  (0.1352); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.95u 0.37s 00:00:01.31 Elapsed: 00:00:00.56
# Mc/sec: 3344.79
//
Query:       KKY15564.1  [L=319]
Description: putative carrier protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-66  220.3   6.0    9.5e-25   86.4   0.1    3.0  3  Mito_carr  Mitochondrial carrier protein
  ------ inclusion threshold ------
       0.05   13.4   0.8       0.21   11.4   0.8    2.1  1  DUF4748    Domain of unknown function (DUF4748)
      0.062   13.7   0.3        1.7    9.1   0.0    2.5  2  PsbR       Photosystem II 10 kDa polypeptide PsbR


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.1   9.8e-27   5.9e-23       4      95 ..      18     113 ..      16     115 .. 0.92
   2 !   86.4   0.1   1.6e-28   9.5e-25       2      93 ..     121     215 ..     120     218 .. 0.94
   3 !   55.5   0.3   6.9e-19   4.1e-15       4      94 ..     223     310 ..     221     313 .. 0.90

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 9.8e-27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS....HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa....ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 +++ ++l+Gg+++av++++++P+++vK  +q+q ++ k+ + ++    i+++++++ k+eG+++l+rG+++n++r++p++al+f++ +t+k ++  
  KKY15564.1  18 GFVVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLDKkyggIIECFSRTAKQEGVMSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAF 113
                 57899***************************9999776666666777********************************************9975 PP

  == domain 2  score: 86.4 bits;  conditional E-value: 1.6e-28
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS...HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   2 elsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa...ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 +++++ +l++Gg+aga++ l+++ ld+++trl +++ks+kk + ++   ++dv+kk++ ++G++glyrG++p++ +++++++l+f+ly+++k +l
  KKY15564.1 121 WKWMAGNLASGGAAGATSLLFVYSLDYARTRLANDAKSAKKGGERQfngLVDVYKKTLASDGIAGLYRGFGPSVAGIIVYRGLYFGLYDSIKPVL 215
                 78999*****************************999998877777888*******************************************987 PP

  == domain 3  score: 55.5 bits;  conditional E-value: 6.9e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ++l+++l G+   ++a+++ +Pld+++ r+++ ++++ k ks   ld+ ++i+  eG++++++G+++n+lr +  ++  +++y++ + ll+
  KKY15564.1 223 NFLASFLLGWGVTTGAGIASYPLDTIRRRMMMTSGEAVKYKS--SLDAARQIMAAEGVKSFFKGAGANILRGVAGAG-VLSIYDQAQLLLF 310
                 68999*******************************998776..8****************************5555.5669999988876 PP

>> DUF4748  Domain of unknown function (DUF4748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.8   3.4e-05      0.21       3      20 ..     226     243 ..     225     245 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.4e-05
     DUF4748   3 ksiwlgWgslcvaGigay 20 
                  s+ lgWg+ + aGi++y
  KKY15564.1 226 ASFLLGWGVTTGAGIASY 243
                 5899*************9 PP

>> PsbR  Photosystem II 10 kDa polypeptide PsbR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.046   2.8e+02      10      54 ..      51      97 ..      43     139 .. 0.78
   2 ?    9.1   0.0   0.00028       1.7      11      70 ..     253     318 ..     245     319 .] 0.82

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.046
        PsbR 10 kplGksgdlelkeg..vdasGrkakGkGvyqfvdkyGanvdGyspiy 54
                 ++ k+g l+ k g  ++   r+ak +Gv        anv  y p  
  KKY15564.1 51 DEMIKAGRLDKKYGgiIECFSRTAKQEGVMSLWRGNTANVIRYFPTQ 97
                55666666666543338889999999***999999999999998864 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00028
        PsbR  11 plGksgdlelkegvdasGrkakGkGvyqfvdkyGanv......dGyspiytkdewsesGdvyvgGt 70 
                  +  ++++++k+ +da+ +    +Gv  f +  Gan+       G   iy++ +    G +y+gG+
  KKY15564.1 253 MMTSGEAVKYKSSLDAARQIMAAEGVKSFFKGAGANIlrgvagAGVLSIYDQAQLLLFGKAYKGGS 318
                 56778899****************************754443346678999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 1963.89
//
Query:       KKY15565.1  [L=291]
Description: hypothetical protein UCRPC4_g06272 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.35s 00:00:01.01 Elapsed: 00:00:00.55
# Mc/sec: 1581.73
//
Query:       KKY15566.1  [L=262]
Description: putative 5-formyltetrahydrofolate cyclo-ligase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-17   62.3   0.0    6.3e-17   62.0   0.0    1.2  1  5-FTHF_cyc-lig  5-formyltetrahydrofolate cyclo-ligase family


Domain annotation for each model (and alignments):
>> 5-FTHF_cyc-lig  5-formyltetrahydrofolate cyclo-ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   3.5e-21   6.3e-17      25     187 .]      51     217 ..      15     217 .. 0.79

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 3.5e-21
                     HHHHHHHHTSHHHHH-SEEEE----TTS---HHHHHHHHHTTEEEEEEEECSSCTEECEEEEEECCCCCCCCCHCTSSCE--TTECCBCGGG... CS
  5-FTHF_cyc-lig  25 ealsqrieslkesqeakrvalyvsvkgeidtkelikklleegkevllPrvrlesgslkvvrlttlkeedslesgkyglkePeeeeerelale... 116
                       +++r++s++++++    a ++ + ++   +el+ ++l++gk vl+ +++ + g+  ++  ++  + d+l++    ++e + +    ++++   
      KKY15566.1  51 TVATSRLISHPAFKA----AKVIFITPDNCLEELRLEALNAGKIVLVTTYSIRRGFWLLDPAVIKGDIDRLKASLLDTMEKVGRHVTLQQMKden 141
                     333455555555554....45566789*********************************************99888777665544333333567 PP

                     .G-SEEEE--SEEE.TTS-EE-SSTTHHHHHHHHHTS.T-S.S--EEEEE--GGGEES.-----ST----SEEE-S CS
  5-FTHF_cyc-lig 117 .kldlvlvPgvAfd.keGaRlGkGkGyyDrflarlkg.gag.dkpltvglaldeqlve.rlPleehDvpvdevvte 187
                       +dl++++  A+d ++G R GkG G++D + a l+  g + d    vg + d+q+v+  l+ e++D   d +vt+
      KKY15566.1 142 lVVDLLVTGTGAVDtRTGIRFGKGHGFFDLEWAILSTlGMIrDGAQVVGFCHDCQVVDeGLEAEQFDTVCDLIVTP 217
                     89**********************************9966515577899********999**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.34s 00:00:00.93 Elapsed: 00:00:00.54
# Mc/sec: 1459.83
//
Query:       KKY15567.1  [L=464]
Description: putative vitamin b6 transporter bsu1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-31  109.5  31.2    2.1e-31  109.1  31.2    1.1  1  MFS_1            Major Facilitator Superfamily
    9.4e-12   44.5  12.8    1.7e-11   43.6  12.8    1.5  1  Sugar_tr         Sugar (and other) transporter
  ------ inclusion threshold ------
       0.38   10.5   0.1       0.38   10.5   0.1    2.5  3  Phage_holin_2_2  Phage holin T7 family, holin superfamily II


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1  31.2   3.6e-35   2.1e-31       5     342 ..      70     437 ..      61     448 .. 0.78

  Alignments for each domain:
  == domain 1  score: 109.1 bits;  conditional E-value: 3.6e-35
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlgagal 102
                 +f+++++ s +++ +  ++ e +g+s++++ l  +++ +g av+  +lG+lsd  Gr++v+++++ll+ +   +++ ++ ++++l+++ +l+G++++++
  KKY15567.1  70 TFVTITSTSYVSAKF--LVEEKYGVSAQVATLGQSMFIVGNAVGPAFLGPLSDIGGRKWVYVISILLYTIL-NIGTaLSYNMPMLVIFQFLCGAAGSTA 165
                 333333333322222..67889*************************************************.55553679999**************** PP

       MFS_1 103 fpagaaliadwfpk.eergraigllsagfslGailgpllggllasslg..Wravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 ++++a  iad+f + +  ++ ++l+ a++++G+ +g ++g ++a++ +    ++f+i+ i++ ++ + +++++pe+ p+   k+++ +           
  KKY15567.1 166 VSNVAGTIADLFGDeDGASQPMALFVASANIGPSVGSPVGEWIADNTNmgLNWIFWINVIIGGVFSL-AMCFVPETLPRQVIKNEVARHgsvdenaiav 263
                 **************7778999***********************655555**************977.6699999999999999998878777776665 PP

       MFS_1 189 kgtgpaplvp.......awkallkdpvlwillialllfffgfsglltllplylqevlgls........glllaglllallalvgailallagrlsdr.. 270
                 + t+   l++       a++++ + p   i+ + ++++++++ +l+ +l     +v+ ++         l ++   + ++ +v++++ ++ ++l +r  
  KKY15567.1 264 AETKVNVLKEmrfittmAFRIMITEP---IVTFLAIYNGWAYGLLFLYLDGV-FDVFVYNnglsyigaDLTYLN--FVVGVVVMFAIVPIQTYLYKRdr 356
                 33333333336666678899999999...56677777777888888888885.677777777779955444444..5555555555577******9988 PP

       MFS_1 271 ......lgrrrrlllallllllaalglallavtssavllllvlvl....iGfglgfvfpsllalasdlappeeagtasglfn 342
                         ++ r l++l+ + l+ ++l+++a+ts+   ++++ v+    +Gf+  + +  +l++++d +p + a++a+++f 
  KKY15567.1 357 lrnggqNRPEARFLISLVTVWLFPISLFWFAFTSNGNTSYWSPVIagavLGFCDPLLYLGMLNYITDAYP-NVAASAIAAFL 437
                 88777766699**********************9999999977773333555555559999999999997.88888887775 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6  12.8   2.9e-15   1.7e-11      43     304 ..      85     344 ..      53     354 .. 0.73

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 2.9e-15
                 H..........HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHH.HHHHHHHHHHHHHHTTS-S CS
    Sugar_tr  43 e.......ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGi.gvGlasvlvPmyisEiApk 133
                         s+   +l  s+f+vG ++G  f+g+l+d+ GRk++++i+++l+ i ++ +a++    ++ +l++ ++l+G  g  ++s+++ + ++ +  +
  KKY15567.1  85 LveekygvSAQVATLGQSMFIVGNAVGPAFLGPLSDIGGRKWVYVISILLYTILNIGTALSY---NMPMLVIFQFLCGAaGSTAVSNVAGTIADLFGDE 180
                 233344445668899***********************************************...9************636788899999999889999 PP

                 CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHH CS
    Sugar_tr 134 klRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdsle 232
                 + +++ + l+  +  +G  v++ +g  +++++n  g  + +++++++  +++++++f+PE+    v+k++  +   v ++   +++ + ++ +e++ + 
  KKY15567.1 181 DGASQPMALFVASANIGPSVGSPVGEWIADNTN-MGLNWIFWINVIIGGVFSLAMCFVPETLPRQVIKNEVARHGSVDENAIAVAETKVNVLKEMRFIT 278
                 999999999999999999999999999988888.8999***********************76677777676777777776666777777777777666 PP

                 HHHH.....HTTHHHHSH...HHHHHHHHH.HHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHH CS
    Sugar_tr 233 aeqeeekaswkellssktvrqrlligvvlq.ifqqltGinaimyysptifenlglsksllvtiivgvvnfvat 304
                  +     a+  ++ + +  + ++ +g ++  +f  l G++ ++ y   +   +g + + + +++vgvv ++a+
  KKY15567.1 279 TM-----AFRIMITEPIVTFLAIYNGWAYGlLFLYLDGVFDVFVYNNGLS-YIGADLT-YLNFVVGVVVMFAI 344
                 66.....2222222222234444444444313455555555555555443.3455444.77777777776665 PP

>> Phage_holin_2_2  Phage holin T7 family, holin superfamily II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2       0.6   3.6e+03      25      41 ..      55      69 ..      54      76 .. 0.66
   2 ?   10.5   0.1   6.3e-05      0.38      27      46 ..     124     144 ..     109     149 .. 0.80
   3 ?   -3.0   0.3         1     6e+03      12      31 ..     198     223 ..     195     225 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.6
  Phage_holin_2_2 25 sldeWvlvatllYtVlQ 41
                     s++ W+  +t +Y  lQ
       KKY15567.1 55 SWKKWL--ITSIYCLLQ 69
                     566665..356676666 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 6.3e-05
  Phage_holin_2_2  27 deWvlvatl.lYtVlQIGakv 46 
                        Wv+v+++ lYt+l IG  +
       KKY15567.1 124 RKWVYVISIlLYTILNIGTAL 144
                      57***998537*******865 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1
  Phage_holin_2_2  12 Pialvsaay.sa.....GlsldeWvl 31 
                      P+++  ++  +a     Gl +  W+ 
       KKY15567.1 198 PSVGSPVGEwIAdntnmGLNWIFWIN 223
                      55555555534455566777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.53
# Mc/sec: 2621.49
//
Query:       KKY15568.1  [L=408]
Description: hypothetical protein UCRPC4_g06275 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-21   76.7   9.3    2.6e-21   76.3   9.3    1.1  1  Cellulase  Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   9.3   1.4e-25   2.6e-21       5     279 ..      79     377 ..      75     379 .. 0.76

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 1.4e-25
                 SEEEEGEEECETTSCGGSHHHHHHHHHHHT-SEEEEEEE.C..TGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESSTTT.CSSSSTTTTHH CS
   Cellulase   5 gkpvnlkglstswgnpyttkalidevkdagfntvRlpvs.w..gelvenapdykvdenslerveevvkyakenglyvildiHseegw.ltkadgnssed 99 
                 g++++ ++++ +w++ y t++ ++e+ + g nt+R+pv+ w  ++lv+++++y + +  ++ +e+v ++a ++gly+i+d+H  +g  +  +  +++++
  KKY15568.1  79 GQDAANTAFQKHWSTWY-TEDDFTEMVSYGLNTIRIPVGyWmyESLVDSSSEY-FPQGGFAYLEQVCNWAANAGLYIIIDLHGAPGAqVSTNADTGQYA 175
                 56666678888999876.77888999999*********953789***99***9.*****************************9444234455556666 PP

                 HHHHHHHH........HHHHHHHHHTTTTT..TEE.EESSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTTS...........SEEEEECHHHH CS
   Cellulase 100 taeeffkk........lwtqiAerykknde..vvi.felmNEPhgnntgaewtseeadevkayaeeaikaIRavgpn...........rliivegnsws 176
                 ++  f+++        ++t++ +   +n++  +v+  e++NEP +n+++  +    ++ + +y+  a++aIRa+                i+v +++w+
  KKY15568.1 176 STAGFYQTyqytraveFLTWMTTNIHSNNNfrNVGtLEIVNEPIQNSKT--V----STMLSSYYPLAFAAIRATELGlgistsssssqLNIMVMSQKWG 268
                 6666666677777787899999999877776656438********7654..5....78****************8764445556666656666666777 PP

                 T.BHHHHHCTSGSSSSTTEEEEEEEETTTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTSSHHHHHHHHHH............. CS
   Cellulase 177 g.nldgavlndPndsqdnliysvHfYgpsdfaqtefgkdltdktnlaqrledaakylvekgipviigEfGgsnadgdlakeeaekw............. 261
                 + n+++  l+  n  +  + y+ H Y  +d +       + +++ +  + +d+ +++ +  +pvi+gEf +s ad+    e  + w             
  KKY15568.1 269 SgNPTK-YLSS-NYTSTDISYDDHRYLKWDSTV----VPVSQSSYISASCSDNRGNASDT-APVIVGEFSLSVADS---VENTSDWkpsnnptfyknwf 357
                 644444.3332.345899************644....3567889999999999***9996.7**********7777...44444444555555555558 PP

                 .HHHH.HHTTTEEEEEEESS CS
   Cellulase 262 .ldyl.kekgiswiyWslnp 279
                  ++++  ek+ +wi+W++++
  KKY15568.1 358 aAQVMaYEKSNGWIMWAWKN 377
                 866663466899******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2582.93
//
Query:       KKY15569.1  [L=513]
Description: putative c6 zinc finger domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-09   36.8   9.5      5e-09   36.1   9.5    1.4  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   9.5   2.8e-13     5e-09       1      37 [.      28      63 ..      28      66 .. 0.94

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 2.8e-13
                SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCC CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfysess 37
                +aC++Cr +++KCd ++P+Cs C  l++eC  y+e+ 
  KKY15569.1 28 QACQTCRARRTKCDNGRPSCSACLHLGAECI-YREKD 63
                69*****************************.99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 3277.69
//
Query:       KKY15570.1  [L=530]
Description: putative maltose permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-79  268.1  23.0    1.6e-79  267.9  23.0    1.0  1  Sugar_tr  Sugar (and other) transporter
    6.7e-15   54.9  35.4    6.7e-15   54.9  35.4    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.9  23.0   1.8e-83   1.6e-79       1     452 []      47     497 ..      47     497 .. 0.93

  Alignments for each domain:
  == domain 1  score: 267.9 bits;  conditional E-value: 1.8e-83
                 HHHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   1 valvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 ++l+ a++ +  g+d  v ga+l+++ f  +fg + +k++    +++++++ si +vG+++G+++ ++l+d +GR+ +l i+ v++ +g++  ++a+  
  KKY15570.1  47 WCLFFAMTAVGWGFDAQVNGAILSVPRFREDFG-YIYKGQPILPASWQSAFNSISSVGQFLGGFICSWLADLIGRRAALGIGLVFCAAGIFGEVFAT-- 142
                 688999999999***************655555.6677778889*****************************************************.. PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPryl 198
                     ++++g+++vG+g+G++ +l P+y+sEi+p +lRg  +s ++++i++G+l++  +  g+ +  +++ +r +l++q+++ l+l+i+l ++PESP+y+
  KKY15570.1 143 -VKVAFLIGKLIVGVGLGFCLTLGPLYCSEISPVALRGLTTSGTNFGIVVGQLLSNSVLRGFGNRPDRWSYRGPLAMQWLFVLILAIGLPWAPESPWYY 240
                 .5588999******************************************************666666******************************* PP

                 HHTT-HHHHHHHHHHHHHC.HHHHHHHHHHHHHHHHHHH......HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HHHH CS
    Sugar_tr 199 vekgkeeeakevlaklrge.edadrelaeekdsleaeqeee.kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks..llvt 293
                 v k++   a++ l++l g+  d + +la ++++++ e++ + + +w+  ++  t++ r li v++ ++q +tGi +++ +s+++f+ +gl  +  +   
  KKY15570.1 241 VRKNDLPSARTQLRNLYGTeFDTEARLATMIKTINDEVSVQgNSKWSDCFKG-TNFTRSLISVGVFACQHFTGIIFVLGFSTYFFQLAGLAVEksFDLG 338
                 ***************77775899999***********99999999**99999.569*********************************9777669999 PP

                 HHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHH CS
    Sugar_tr 294 iivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiav 392
                 ++v +  +v +++++ l   fGRR+l+l G++  +  ++++g ++ l++++   a+ v   ++++++ +++ ++g+v + ++ E+ + ++R+ ++a+a+
  KKY15570.1 339 VGVTACGVVGVIISWSLLNNFGRRRLFLCGMISLTTILFLIG-IVSLIPTSP--AKWVQASLTVIYALFYQSTIGCVAFAVLGETPSAHLRARTIALAT 434
                 999999***********************************9.888888887..455555555666667****************************** PP

                 HHHHHHHHHHHHHHHHHHCHHH...T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 393 avnwlanflisllfpiiteaig...ggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 a++ ++ ++++++ p+++   +   +g+v++vf+gl +l++++ +f +pe kgrt+ ei+e+f
  KKY15570.1 435 ATQAIFGIVMNIIVPYMVTPNEanlKGKVGFVFGGLSLLATLWAYFYIPELKGRTFHEIDEIF 497
                 *****************976666667**********************************997 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9  35.4   7.5e-19   6.7e-15      14     351 ..      62     443 ..      43     445 .. 0.75
   2 !   15.0  14.5   9.9e-07    0.0088      42     177 ..     342     485 ..     337     512 .. 0.76

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 7.5e-19
       MFS_1  14 i....lgpalplalaedlg........ispseigl...lltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..fasslw.lllvlrvl 94 
                 +    +++++p    ed+g        +    +++     ++ ++g++++ ++ ++l+d +Grr  l +gl++ a+g  ++   f +++  ++l++ ++
  KKY15570.1  62 AqvngAILSVP-RFREDFGyiykgqpiLP---ASWqsaFNSISSVGQFLGGFICSWLADLIGRRAALGIGLVFCAAG--IFGevF-ATVKvAFLIGKLI 153
                 14433555555.77888886555533222...5563336667999********************************..444468.99999******** PP

       MFS_1  95 qGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.............Wravfyilaivsllafvlfllllpeepperk 180
                  G+g g+ +++g  + ++++p   rg+ ++  + g+ +G +l       ++  +g              +++f+++ +++l ++    +++++++  ++
  KKY15570.1 154 VGVGLGFCLTLGPLYCSEISPVALRGLTTSGTNFGIVVGQLLS----NSVLRGFGnrpdrwsyrgplaMQWLFVLILAIGLPWAPESPWYYVRKNDLPS 248
                 **********************999988865555555555555....5555444445558888888888888888888888888866688877777777 PP

       MFS_1 181 rkspkeee......................kgtgpaplvpawkallkdpvlw...illialllfffgfsglltllplylqevlgls...glllagllla 251
                   ++ + +                      + +g++++++     +k   +    i + ++++ +f   +++  + +y+ +  gl+   + + +g  ++
  KKY15570.1 249 ARTQLRNLygtefdtearlatmiktindevSVQGNSKWSD----CFKGTNFTrslISVGVFACQHFTGIIFVLGFSTYFFQLAGLAvekS-FDLG--VG 340
                 7777777688888888888888777665555555555555....55555553333578888888777777888888899999****7744.7777..55 PP

       MFS_1 252 llalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllll...vlvliGf.glgfvfpsllalasdlappeeagtasglfntags 346
                 ++a++++++ +++  l++ +grrr  l ++++l+++++++ +++++ ++++ ++   + v++ +  ++++ + ++a++ +  +++ +++ ++l++ +++
  KKY15570.1 341 VTACGVVGV-IISWSLLNNFGRRRLFLCGMISLTTILFLIGIVSLIPTSPAKWVqasLTVIYALfYQSTIGCVAFAVLGETPSAHLRARTIALATATQA 438
                 555554333.445555588***999999999999999999999999888888888878888999899999*************************9999 PP

       MFS_1 347 lggal 351
                 + g++
  KKY15570.1 439 IFGIV 443
                 87765 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 9.9e-07
       MFS_1  42 algaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa.....sslwlllvlrvlqGlga.galfpagaaliadwfpkeergraigllsagfslG 133
                 ++  +v++++  +l ++fGrrr++l+g++++    +l+++++     +  w+ + l v+ +l++ +++  ++ a++ +  +   r+r i+l++a+ ++ 
  KKY15570.1 342 TACGVVGVIISWSLLNNFGRRRLFLCGMISLTTIlFLIGIVSliptsPAKWVQASLTVIYALFYqSTIGCVAFAVLGETPSAHLRARTIALATATQAIF 440
                 455678889999999**************999993444443245554334578888899999999999******************************* PP

       MFS_1 134 ailgpllggllasslg...Wravfyilaivsllafvlfllllpeepp 177
                  i+  ++ +++++         v ++++++slla + +++++  ++ 
  KKY15570.1 441 GIVMNIIVPYMVTPNEanlKGKVGFVFGGLSLLATLWAYFYI--PEL 485
                 ************666655523358888888888877544444..443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 3172.13
//
Query:       KKY15571.1  [L=339]
Description: putative trna splicing 2 phosphotransferase 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-62  210.7   0.0    2.1e-62  210.4   0.0    1.1  1  PTS_2-RNA  RNA 2'-phosphotransferase, Tpt1 / KptA family


Domain annotation for each model (and alignments):
>> PTS_2-RNA  RNA 2'-phosphotransferase, Tpt1 / KptA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.4   0.0   1.1e-66   2.1e-62       4     181 .]      13     255 ..      10     255 .. 0.90

  Alignments for each domain:
  == domain 1  score: 210.4 bits;  conditional E-value: 1.1e-66
   PTS_2-RNA   4 vqlskaLsyiLRhgaekegLkiredGyvkvedlLelpklkslkvtleeikevVesndKqRFelvel................................. 69 
                 v +sk+Ls++LRh+a++e+++++++Gy+kv+dlL+++k kslk+t++ei + V +n+KqRF+l++                                  
  KKY15571.1  13 VVVSKTLSRVLRHSAPQEKIELTPQGYAKVSDLLKWHKAKSLKITFQEILDSVVENNKQRFALLYTadggkelksdnfgddikdlsldsqktstqvale 111
                 789***********************************************************99555******************************** PP

   PTS_2-RNA  70 .........eelliranqghsikkvesselllepi..esaeelpevvvHgTylkawesilasggLkrmsrnhihlatgl.........pgeke...... 142
                          + +lira+qghsik+++s++  lepi  ++++++p++vvHgTy++aw+ i+++ggLk+msr h h+a g              +      
  KKY15571.1 112 kakvdqdprH-YLIRATQGHSIKTIDSAD-YLEPItlDKPDSIPDTVVHGTYHAAWPLIMTTGGLKPMSRVHAHFAIGPtlseimpdgI---Dgpvkpr 205
                 *******844.***********9987755.8****7777778***********************************975555555550...0555555 PP

   PTS_2-RNA 143 ...........visgmrksaevliyidvekaladgikfyvsengviLteG 181
                            visgmr++a++liyi+++kal++g++f++sengviL+eG
  KKY15571.1 206 sgtvpgqgnqvVISGMRTDAQILIYINIKKALESGVPFWTSENGVILSEG 255
                 55666666677**************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 2026.06
//
Query:       KKY15593.1  [L=695]
Description: putative protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-15   56.9   0.0    8.5e-15   54.8   0.0    2.0  1  Pkinase        Protein kinase domain
    3.1e-09   36.5   0.0      1e-08   34.8   0.0    1.8  1  Pkinase_Tyr    Protein tyrosine kinase
  ------ inclusion threshold ------
      0.011   15.4   0.5       0.16   11.7   0.1    2.4  2  DCB            Dimerisation and cyclophilin-binding domain of
       0.17   12.8   2.8       0.99   10.3   0.1    2.8  2  Filament_head  Intermediate filament head (DNA binding) regio


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   1.9e-18   8.5e-15      42     264 .]      76     348 ..      64     348 .. 0.74

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 1.9e-18
                 H..HHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHHHHSS--HH.............................HHHHHHHHH CS
     Pkinase  42 e..kkvlrEikilkklkhpnivrlyevfee..kdelylvleyveggeladllerkgslsee.............................eakkiakqi 107
                 e  +++ rE + l++l+hp +++l e +e+     l++ +e v   +la ll ++   + +                             e++k + qi
  KKY15593.1  76 EvvERLKREASNLARLRHPSVLQLTEPVEDtrGGGLMFATEPVTA-SLAGLLAERDEQERSggvggrpsryvvedadgtkrrrdveiddlEIQKGVLQI 173
                 13467889*********************9773445555666653.35555552222222233444444444444555555555555555********* PP

                 HHHHHHHH.HTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS...................BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHH CS
     Pkinase 108 legleylH.skgiiHrDlKpeNiLidekgelKitDFGlakelesssk...................ltsfvgtseYlAPEvlkeneyskkvDvWslGvi 186
                 ++gle+lH s++++H  l p+ i ++ kg+ K++ + +a   ++ +                     +s+ +  ++ +P  + ++++  ++D++slG+i
  KKY15593.1 174 AKGLEFLHeSAKLVHGNLAPDAIYVNAKGDWKLAGLAFAGPQNTAKGhqtlptialskvlyhdprlPRSVQINLDFTSPDFVLDTNVAVSADMYSLGLI 272
                 ********8899**********************9999987777666789****************9******************************** PP

                 HHHHHH..SS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 187 lyellt..gkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                  + l++   + p++ + + ++++k +++      +    ++++   + +++e+ + l +ll++ p++Rlta+e  ++ y+
  KKY15593.1 273 AVALYSfpHTSPLQTHGNISTYKKLFEN----SSTTPSPSNSFLSSRPLPKELSQTLPRLLARRPSQRLTAKEFQESAYF 348
                 *999762245555533333333333333....22222445555556666*************************999997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   2.3e-12     1e-08      40     254 ..      73     341 ..      67     345 .. 0.83

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 2.3e-12
                  SSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHT...........................CTTTSBHHHHHHH CS
  Pkinase_Tyr  40 ateeekeelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkfLrkk...........................ekekltlkdllsf 108
                   ++e  e+l +ea+ + +l+hp +++l+  +   +++ l++ te v+  +L   L ++                           ++ +++  ++ + 
   KKY15593.1  73 LHDEVVERLKREASNLARLRHPSVLQLTEPVEdtRGGGLMFATEPVT-ASLAGLLAERdeqersggvggrpsryvvedadgtkrrRDVEIDDLEIQKG 169
                  4555578999*********************9656667999999986.5899999999999*********************9665556666667899 PP

                  HHHHHHHHHHHHH.TTEEEST-SGGGEEEEE..................TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHH CS
  Pkinase_Tyr 109 alqvAkGmeyLes.kklvHrdlaarNvLlse..................nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksD 187
                  +lq+AkG+e+L++  klvH +la   + ++                   + +  +   +L++ +++d +    ++ ++++ +++p  + ++++ +++D
   KKY15593.1 170 VLQIAKGLEFLHEsAKLVHGNLAPDAIYVNAkgdwklaglafagpqntaKGHQTLPTIALSKVLYHDPRLP--RSVQINLDFTSPDFVLDTNVAVSAD 265
                  9**********86268**************99999999999999988777777788899999998888775..5678999****************** PP

                  HHHHHHHHHHHHTTSS.GTTTTSHHHHHHHHH.HTTEES-BBTTS.......BHHHHHHHHHHT-SSGGGS--HHH CS
  Pkinase_Tyr 188 vWsfGvllwEiftlge.spypglkneevlekl.kegkrlekpekc.......peelyelmkkcweedpeeRptfse 254
                  ++s G +   ++++ + sp+++  n ++++kl +++   + p++        p+el + + + ++++p++R t +e
   KKY15593.1 266 MYSLGLIAVALYSFPHtSPLQTHGNISTYKKLfENSSTTPSPSNSflssrplPKELSQTLPRLLARRPSQRLTAKE 341
                  *************997579999999999999878888888887643333333777788888888888888877666 PP

>> DCB  Dimerisation and cyclophilin-binding domain of Mon2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.053   2.4e+02      54      86 ..     474     506 ..     440     547 .. 0.78
   2 ?   11.7   0.1   3.5e-05      0.16      39     139 ..     565     665 ..     555     670 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.053
         DCB  54 aeaseeilkPlllacetknpkivqiaLgslqrL 86 
                 +e+ ++il  ++l+ e+    iv+ +L+sl   
  KKY15593.1 474 KEFKDNILPIIILGMESPTHPIVDASLQSLDHV 506
                 4455678888899***************99765 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.5e-05
         DCB  39 Lktikssseeeeqslaea.seeilkPlllacetknpkivqiaLgslqrLisheviseeaiskiietlwkllelgveielkvLqtllllvttss.vvhgd 135
                 L++ ++++  + + l ++ ++e + Pll+a +tk+p ++  aL+  ++  +  + +++ +++++ ++w+     + + l+  q++++l+++ s +++++
  KKY15593.1 565 LQSSEKKPAVASTGLDKFtVQEKVVPLLKAIKTKEPAVMMAALKVFRQVGKI-ADTDFLATDVLPIMWAFSIGPL-LSLQQFQAFMTLIKSLSaKIENE 661
                 555555554457777777458999***************9999987765443.3345668999*****8766655.5***************999*999 PP

         DCB 136 tlak 139
                 +++k
  KKY15593.1 662 QIKK 665
                 9887 PP

>> Filament_head  Intermediate filament head (DNA binding) region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.3      0.13   5.8e+02      18      38 ..      50      70 ..      29     103 .. 0.54
   2 ?   10.3   0.1   0.00022      0.99       2      70 ..     290     351 ..     289     354 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.13
  Filament_head 18 srrsyssrsgsrsvssrsysr 38
                    r s   +s++ + +s+s ++
     KKY15593.1 50 DRKSLDVSSSGFGARSGSSAS 70
                   333333333333333333332 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00022
  Filament_head   2 ssSsYRRtfgdssssssrrsyssrsgsrsvssrsysrsssssspssssrrssrsasrssysssalgdsl 70 
                    + S+Y++ f+      s+++ s++ ++   ssr +    s++ p + +rr s+  +++  + sa+ d+l
     KKY15593.1 290 NISTYKKLFEN-----SSTTPSPSNSFL--SSRPLPKELSQTLPRLLARRPSQRLTAKEFQESAYFDNL 351
                    679********.....555555665555..588888888889999999999999999998888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.35s 00:00:01.08 Elapsed: 00:00:00.52
# Mc/sec: 4050.09
//
Query:       KKY15594.1  [L=331]
Description: putative branched-chain amino acid cytosolic [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.7e-36  123.9   0.0      1e-35  123.6   0.0    1.0  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.6   0.0   5.7e-40     1e-35       2     223 .]      38     290 ..      37     290 .. 0.95

  Alignments for each domain:
  == domain 1  score: 123.6 bits;  conditional E-value: 5.7e-40
  Aminotran_4   2 lfEtmrvy...ngei..ffldeHleRLrksaellglelpfdeeelrkileelleannsen.......grlrllvsrgggglgaatsepsvavyvsalp 87 
                  +fE+m++y   +g i  f+ d+++ RL+ks+++l + ++fd + + k++ el + +n +        ++lr+++++++  lg  ++  s++++v+a+p
   KKY15594.1  38 CFEGMKAYknaDGTIrlFRPDRNMRRLNKSSARL-ALPTFDGDNMIKLIGELCKLDNRFIpaekgysLYLRPTMIGTQRTLG-VGPPGSALLFVIASP 133
                  8********9999999889************999.8****************************98888*********9999.*************** PP

  Aminotran_4  88 pgpeseke....lplvtssdvrrdapsplpgaKtlnyldnvlarreakergadevl.lvdedgnvtEgstsNvfivk......ggelitPplssgiLp 174
                   gp++ +       ++t+++vr+++  +  +    ny++++l +++a++rg+ + l l+ e+ +vtE++t+N+fi          elit+pl+++iL+
   KKY15594.1 134 VGPYYPTGfkaiNLEATDYAVRAWPGGVGDKKLGANYAPCILPQQQAAKRGFHQNLwLFGEEEYVTEVGTMNLFIALkdketgQPELITAPLDGTILE 231
                  ***********955566666*********************************8888******************999****99************** PP

  Aminotran_4 175 Gitrrallelakal....gleveereitlkdle......eadeafltntlrgvlpvrsi 223
                  G+tr+++lela+++    g++++e+ i++kd+       ++ e+f  +t++ v pvr+i
   KKY15594.1 232 GVTRESVLELARQRlgpeGWKISEKYIRMKDIAeasaegRMIEVFGAGTAAIVSPVRKI 290
                  *************99******************888888899***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2237.14
//
Query:       KKY15595.1  [L=84]
Description: hypothetical protein UCRPC4_g06227 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       149  (0.00831056); expected 358.6 (0.02)
Passed bias filter:                       98  (0.005466); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.47
# Mc/sec: 537.94
//
Query:       KKY15596.1  [L=1252]
Description: putative intermediate filament protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-49  168.9   0.5    5.2e-49  166.7   0.2    2.4  2  PXA       PXA domain
    8.1e-24   84.4   0.0    3.9e-23   82.2   0.0    2.3  1  Nexin_C   Sorting nexin C terminal
    1.7e-19   69.9   0.2    4.4e-19   68.5   0.2    1.7  1  PX        PX domain
    6.2e-10   39.4   0.8    1.9e-09   37.8   0.1    2.2  2  RGS       Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PXA  PXA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.7   0.2   1.2e-52   5.2e-49       4     180 ..     104     283 ..     101     285 .. 0.96
   2 ?   -1.4   0.0      0.46     2e+03      98     128 ..    1053    1085 ..     984    1192 .. 0.59

  Alignments for each domain:
  == domain 1  score: 166.7 bits;  conditional E-value: 1.2e-52
         PXA   4 ldeelhellalilrdfVlsWYskissdeeFptevrsilrsviralanrlkkvDlaqllltrlldlltshlrdyrqaeekvkskkae......eesdldl 96 
                 ++++l+ l+ l+lrdfV+sWY++is+d++F++e+++ +r +i+++++rl + D++ ++++r+++++t+hlrd++ ae++v++k  +      ee+d ++
  KKY15596.1 104 ISDALDGLVTLALRDFVSSWYKNISKDPTFVNEIDRGIRCAIAEIRDRLFREDIVIVVVSRVVPIITQHLRDFDIAERAVRGKALNrsvtesEELDMAI 202
                 899**********************************************7799999******************************************* PP

         PXA  97 aakffalephpalsavlrdieeskeaelaylrslverlLslllppedlesetvrtlvreilanvvlkplleklsdPdfinqlii 180
                 aak++++++hpa+s ++   +++k +e++ylr++  r+L+ +lp++ l+s++v++l++ei+a++vl p++++l+dPdf+nql++
  KKY15596.1 203 AAKYREGKLHPAASLTY---SDTKLSEQEYLRKILVRILPEVLPESLLKSRAVSVLIKEIVACAVLFPVFQMLADPDFYNQLME 283
                 *************9766...468999********************************************************97 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.46
         PXA   98 akffalephpalsavlrd..ieeskeaelaylr 128 
                  ++f++ e++p ++++++   ++ + ++ +++lr
  KKY15596.1 1053 NAFEDRELEPFVKPICDIflEAFDLNKGNNWLR 1085
                  355556666666665544543333333344444 PP

>> Nexin_C  Sorting nexin C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.0   8.7e-27   3.9e-23       1     111 [.    1083    1219 ..    1083    1220 .. 0.93

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 8.7e-27
     Nexin_C    1 WlrrqaltvlkqvlqqllgdtierwlkekiekltseeavaslikklrdalWPdg.............................eskaesaperseee 68  
                  Wlr++a+   ++vl+qllg+t+er++++ ++++t e+a++++i+ ++d++WP                               + + ++++ r+  e
  KKY15596.1 1083 WLRGRAV---VVVLHQLLGGTVERKVRDIVKSFTAEDAILKYISTIKDKMWPLPsstnsttttlpsspsnisttlasssddtlRLSRPPSKLRTPTE 1176
                  *****99...*****************************************65466777778888888889999999999999788888899***** PP

     Nexin_C   69 klrtraearklLlellpdalvsvvGrknaeealkrifellQnp 111 
                  k+++r+ea  lL +l+pd++++vvGr+na++a+++i ++l+n+
  KKY15596.1 1177 KSKSRTEASLLLATLIPDLAGNVVGRANAQQAARKIAAMLNNR 1219
                  *****************************************97 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.2   9.7e-23   4.4e-19       7     112 ..     866     971 ..     859     972 .. 0.90

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 9.7e-23
                 EEEEEEEETTSSEEEEEEEEEETTS....SSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSCHHH CS
          PX   7 svleretsgskkhsyylyevelktg....akewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelr 101
                 +++ +e + ++++ +yl+ev++k g    a +wtv RrYs+F++L++k++ ++p+ +   +P+++++ +    ++ef+ krr +Le+yL++ll  p  +
  KKY15596.1 866 VMVGKE-EDGREYAMYLIEVQRKAGdqmpAASWTVARRYSEFHDLYRKIRARYPSTRELDFPRRRVVMK---LQREFLHKRRLALEDYLRKLLLLPDVC 960
                 344444.36999******************************************99999******9876...9************************** PP

                 HSHHHHHHHHS CS
          PX 102 nsevlteFLev 112
                 +s++l++FL++
  KKY15596.1 961 RSRELRSFLSQ 971
                 *********86 PP

>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.1   4.2e-13   1.9e-09       3     117 ..     419     552 ..     417     553 .. 0.90
   2 ?   -2.8   0.0       1.6   7.3e+03      67     102 ..     835     868 ..     826     871 .. 0.64

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 4.2e-13
                 HHHHTSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTS..............SHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCSS.... CS
         RGS   3 eslledqpgrslFreFlesefseenlsFwlaveefkka..............keqeelkkkakeIyneylapsspkelnidkklreelekrleke.... 83 
                  +++ + +g+s+F e+++++ +   ++Fw+ v++f++               +  +   +++ +I ++yl   s+ el+++++ ++ ++++l       
  KKY15596.1 419 VDVMRSASGLSYFMEYMDRQRKMALVQFWIVVDGFRNPleddfgddsdmssiQWTDTDRNDIASINEAYL---SKPELKVPDESKKAVKAFLAAGrqas 514
                 57788889**************************************999776444445566999******...*******************9999999 PP

                 ....STTTTTTHHHHHHHHHHHHHHHHHHHHTSHHHHH CS
         RGS  84 ....qpsrklfeeaqeevfellekdsypkFlkselylr 117
                     +  r +    q++v+e ++++ +p+F+ks+l+ +
  KKY15596.1 515 aeqyRHARVAILSSQSAVLEEMQHQNFPNFQKSDLWYK 552
                 9999899999999*********************9876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.6
                 TS-HHHHHHHHHHHCSSSTTTTTTHHHHHHHHHHHH CS
         RGS  67 nidkklreelekrlekeqpsrklfeeaqeevfelle 102
                 +i +k +++  +++ + + +++lf +a  ++ +++ 
  KKY15596.1 835 EIRRKEMQRQ-QYIVQ-ESDNSLFGRATISITSVMV 868
                 4455555443.34444.5899999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       867  (0.0483574); expected 358.6 (0.02)
Passed bias filter:                      628  (0.0350271); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.90u 0.29s 00:00:01.19 Elapsed: 00:00:00.47
# Mc/sec: 8011.95
//
Query:       KKY15597.1  [L=199]
Description: hypothetical protein UCRPC4_g06229 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-08   31.9   4.5    1.5e-07   31.0   4.5    1.4  1  KRE1      Killer toxin-resistance protein 1


Domain annotation for each model (and alignments):
>> KRE1  Killer toxin-resistance protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   4.5   8.2e-12   1.5e-07       7      51 ..      91     135 ..      82     143 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 8.2e-12
        KRE1   7 TsvwvTvtsnGklttvqttYsQsFsstytevasvssGsIGLGsis 51 
                 T+ +v  t+nG++  v ++Y+Q+F+s+  + +s ssGsIG G+is
  KKY15597.1  91 TTYYVWSTVNGVVEEVAVIYTQTFASVPDQWSSASSGSIGWGTIS 135
                 6667777889**********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1259.80
//
Query:       KKY15598.1  [L=589]
Description: putative dna-directed rna polymerase iii [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-31  108.4   0.0    4.2e-31  108.4   0.0    4.1  4  RNA_pol_Rpc4  RNA polymerase III RPC4


Domain annotation for each model (and alignments):
>> RNA_pol_Rpc4  RNA polymerase III RPC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.0   8.9         1   1.8e+04      86      86 ..      74      74 ..       1     145 [. 0.52
   2 ?   -1.8   0.2       0.2   3.6e+03      43      53 ..     236     246 ..     212     291 .. 0.46
   3 ?   -3.5   4.4      0.71   1.3e+04      53      53 ..     329     329 ..     281     385 .. 0.50
   4 !  108.4   0.0   2.3e-35   4.2e-31       1     149 []     427     584 ..     427     584 .. 0.87

  Alignments for each domain:
  == domain 1  score: -7.0 bits;  conditional E-value: 1
  RNA_pol_Rpc4 86 i 86
                  +
    KKY15598.1 74 V 74
                  2 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.2
  RNA_pol_Rpc4  43 eeskaekasga 53 
                   ee++ e+++ +
    KKY15598.1 236 EEEDVERTDID 246
                   11111111111 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 0.71
  RNA_pol_Rpc4  53 a 53 
                   +
    KKY15598.1 329 M 329
                   1 PP

  == domain 4  score: 108.4 bits;  conditional E-value: 2.3e-35
  RNA_pol_Rpc4   1 egrlylfQfPpllPslkqkavsaaeddkseaesqsaekakaeeeskaekasgaeaeekkskkksskkkkkkkskalklkslpeGviGkLlvhkSGkv 97 
                   +g+lyl+Q+Pp++P l+  a ++a d++++ ++ ++++ +++ +++a ++ + ++e  ++ +++ ++  +k+  ++   +lp G++GkL+vh+SGkv
    KKY15598.1 427 DGKLYLIQLPPMTPVLR--APGEAIDEAQDGGAVKDTTMTTTSGRDAGTEPKIKKEAGTEAAETPPSIMNKQILTAGDDRLPGGFVGKLNVHQSGKV 521
                   589************99..788888888888888888888888888888888888888888888888889999999999****************** PP

  RNA_pol_Rpc4  98 elrlGgillevspGaqpsFlqevvvv..........ee.edekekealvLGkvnkkfvvtPdv 149
                   +l++Gg+++ v+ G++++Flq++v+           ++ e+++++ a++L +v++k+vvtPd+
    KKY15598.1 522 TLDWGGTSMVVNWGTEVDFLQDAVLAvpspgvpdvsDKrESKDPGMAYSLAPVRNKLVVTPDW 584
                   *************************989999986653323344477****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1244  (0.0693848); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.50
# Mc/sec: 3537.46
//
Query:       KKY15599.1  [L=699]
Description: putative c6 finger domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0014   18.7  13.0     0.0025   17.9  13.0    1.3  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9  13.0   1.4e-07    0.0025       3      27 ..     610     633 ..     609     644 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.4e-07
                 -HHHHHCT---STSSSS-HHHHHCT CS
     Zn_clus   3 CdnCrkkKvKCdakkPaCsnCkkln 27 
                 C++Crk K  Cd+++P C++Ck  +
  KKY15599.1 610 CQRCRKSKKGCDRQRP-CQRCKDAG 633
                 ****************.****9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4911.10
//
Query:       KKY15600.1  [L=632]
Description: putative g2 mitotic-specific cyclin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-44  149.5   0.1    7.4e-44  148.6   0.1    1.5  1  Cyclin_N  Cyclin, N-terminal domain
    1.9e-31  108.6   1.2    3.2e-31  107.9   0.0    2.1  2  Cyclin_C  Cyclin, C-terminal domain
  ------ inclusion threshold ------
        5.9    6.8  14.4          8    6.3  14.4    1.2  1  TFIIA     Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.6   0.1   1.2e-47   7.4e-44       1     126 [.     356     481 ..     356     482 .. 0.99

  Alignments for each domain:
  == domain 1  score: 148.6 bits;  conditional E-value: 1.2e-47
                 HHHHHHHHHHCHTS-STTCTTCTSSS-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHHH CS
    Cyclin_N   1 dilknlieqelkflpkpdyldqqpelnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkledlv 99 
                 +i+++++e e k lp+ +y+d+q e++++mR++lidw+v+v+ +f l petlfl+vny+dRfls k+v+  klqlvgat+L++AaK+eei++p+++++v
  KKY15600.1 356 EIFEYMKELEVKLLPNAHYMDNQAEIQWSMRSVLIDWVVQVHLRFGLLPETLFLTVNYIDRFLSCKIVSLGKLQLVGATALFIAAKYEEINCPSVQEIV 454
                 79************************************************************************************************* PP

                 HHTTTSS-HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N 100 yitdeafteeeilemErliLetLnfdl 126
                 y++d+ +t +e+l++Er +L+ L+f+l
  KKY15600.1 455 YMVDGGYTTDEVLKAERFMLSMLQFEL 481
                 *************************98 PP

>> Cyclin_C  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.5       1.7     1e+04      91     109 ..     174     192 ..     165     198 .. 0.70
   2 !  107.9   0.0   5.4e-35   3.2e-31       1     118 [.     484     598 ..     484     599 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.7
                 HHHHGSS--HHCCCCTCGG CS
    Cyclin_C  91 ssapssklqavrrkysssk 109
                 ss++ +++q+v++ +s+++
  KKY15600.1 174 SSSSDQSQQSVQHDISHTR 192
                 4667778888888888776 PP

  == domain 2  score: 107.9 bits;  conditional E-value: 5.4e-35
                 --HHHHHHHHHCCSSHT.-HCCHHCHHCHHHHHHCSCCHCCS-HHHHHHHHHHHCCHHHHS--S-HHHHHHC---HHHHHHHHHHHHHHHHHHHGSS-- CS
    Cyclin_C   1 ptplsFlrrflkaadasedselrtlakylleltlldydflsyppSliAaaalllarstlnspewtetlehytgyskedlkpcvelilellssapssklq 99 
                 p p+sFlrr++ka+d+  d e+rtlaky+le+t++d +f++ p S +Aa++ +lar +l++++w ++++hy+gy+ ++l p+  l++e++ + p ++++
  KKY15600.1 484 PGPMSFLRRISKADDY--DLETRTLAKYFLEVTVMDERFVGSPASFVAAGSHCLARLMLRKGTWGPSHVHYSGYTYSQLLPLLMLMVECC-ECPRKHHS 579
                 88***********999..99**********************************************************************.6677799* PP

                 HHCCCCTCGGGCCCGGS-S CS
    Cyclin_C 100 avrrkyssskfhkvstlse 118
                 +v++ky +++f+++s+++e
  KKY15600.1 580 SVFNKYHDKRFKRASAFVE 598
                 *************998875 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  14.4    0.0013         8      74     256 ..      46     240 ..      22     353 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0013
       TFIIA  74 asaaaasqapastsqslpslvipagksvqslt.a.nssaataatfslpakleppvqipagvtlqtasgqlykvnv...qasgaqqiaaqplqqvvqq.. 165
                 + ++a++ +++++++ l +++ p +++++s   + ++++++ ++   p++    vq   ++t +t +  l+k n+   + ++   +a+++l +      
  KKY15600.1  46 KTTTAQVLQEKKSAALLRPAQRPLSNTIKSILtNsSNNKKEIENAGRPTSAAE-VQAANNITANTRKV-LTKRNTtifKDTSLPTVAENALTSHKAPsa 142
                 22333334444444444444555555565555333233233334444433333.56666666666664.334444456444444444444444433233 PP

       TFIIA 166 ..sqgsaaqssvaalqaqsqqaqalaepqqq.lekqqqqqqqqqqqqqqqqvqqqqqe..................esqqaqqasqeqvagsqvessqt 243
                   s ++++qs +++ +++   +q++ e+qq   ++ q+qq  q+   + + v+q++ +                  +              + v+ ++ 
  KKY15600.1 143 lsSGAPVHQSLITSREGSGTDFQSIKESQQIsSSSDQSQQSVQHDISHTRVVTQTETSipvipsvvdkhfeepqtfH--------------DTVSIQPS 227
                 43778888877777777778888888888884443355566666666666666666666777666553333222220..............22222222 PP

       TFIIA 244 dgaedaleeespv 256
                  ++e+ +++++pv
  KKY15600.1 228 AESEETKSTSAPV 240
                 2333223332333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1004  (0.0559987); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4485.92
//
Query:       KKY15601.1  [L=430]
Description: putative udp-glucose 4-epimerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-38  133.4   0.0    2.4e-31  109.4   0.0    3.6  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    2.5e-38  131.9   0.1    1.2e-33  116.6   0.0    3.1  2  Epimerase        NAD dependent epimerase/dehydratase family
    3.4e-10   39.4   0.1    2.1e-09   36.8   0.1    2.0  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    4.2e-09   36.0   0.0    5.9e-07   28.9   0.0    2.7  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    3.3e-07   30.0   0.0    6.3e-07   29.0   0.0    1.5  1  adh_short        short chain dehydrogenase
    1.2e-05   24.6   0.0    4.1e-05   22.8   0.0    1.7  1  RmlD_sub_bind    RmlD substrate binding domain
    7.4e-05   22.7   0.0    0.00048   20.1   0.0    2.0  1  KR               KR domain
    0.00035   19.8   0.0      0.097   11.8   0.0    2.3  2  NAD_binding_4    Male sterility protein
     0.0042   17.0   0.0     0.0074   16.2   0.0    1.4  1  NAD_binding_10   NAD(P)H-binding
     0.0046   17.2   0.0     0.0085   16.4   0.0    1.4  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   0.0   1.3e-34   2.4e-31       1     218 [.       7     255 ..       7     258 .. 0.80
   2 !   18.8   0.0   4.7e-07   0.00084     222     331 ..     297     396 ..     290     397 .. 0.57

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 1.3e-34
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-T..THHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH.T-SEEEE--S--....... CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfn..tgriehlakdpkeeleenlklhkgDltDssslerllaev.qpdevynLAAqs....... 86 
                    LiTG++G+iGs+++  Ll+++y+v++++++ +sf+  ++rie +         ++  + ++D+tD+s++e ++a++  +d v+++AA +       
     KKY15601.1   7 LITGGTGYIGSFTVLELLQNDYDVVVVDNLYNSFDevVNRIELIS-------GKRPAFENVDITDASAIEAVFAKYpAIDSVIHFAALKvrfpltg 95 
                    9****************************9999862245554443.......45789*******************89********8544444444 PP

                    ......-HHHHTTSHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-S....SSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH- CS
  GDP_Man_Dehyd  87 ......hVdvsfekPeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvq....evpqtEttpfyPrsPYaaaKlyadwivvnyreayg 172
                          +V++s e P  ++ +nv Gtl+LL+ + ++++     ++++S+++vYG+++     +p+ E+ p+ P++PY+ +K++ +  ++++ +++ 
     KKY15601.1  96 vrcaraAVGESSEIPLDYYFTNVYGTLNLLKSMAKHNVY---NIVFSSSATVYGDATrfpnMIPIPEDCPLGPTNPYGNTKMTVELAITDFINSQR 188
                    4443338****************************9985...7999*********97333357899**********************99998876 PP

                    -..............-EEEEEE-E....EESTTS-TT..SCCCHHHHHHHHHHTTS.-C-EECTTTT CS
  GDP_Man_Dehyd 173 l..............favngilfn....hesprrget..fvtrkitravarialgk.qevlylGnld 218
                                        ++fn    h s  +ge+   +  ++ + +a++a gk ++ l++G+++
     KKY15601.1 189 TnlkkagkdaeadkwNGALLRYFNpagsHPSGIMGEDpqGIPFNLLPLLAQVATGKrEKLLVFGDGK 255
                    6556666666665556667788888888888888885446777777788888888834445558876 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 4.7e-07
                    EEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH.............TTGGCCCEECGG--SS--SB--B-THHHHHH CS
  GDP_Man_Dehyd 222 dwghvkDyveamwlmlqqdkpedyviatgethsvrefvelaflelgktiewegkge.eevgrakesgkvvvevdpkyfrpgevdlllgdaskakee 316
                    d + ++Dy+++++l    ++ +  +    +   vr ++      +g+     g+ + e+v++ ++      +++ + +r g+v +l  ++s+a+++
     KKY15601.1 297 DGTAIRDYIHILDLSA--GHLSALNYLRDHHPGVRAWNLG----TGR-----GSTVfEMVKAFSAAVGRDLPYQVVGRRAGDVLNLTSNPSRANQD 381
                    4444555555544422..2222223333333333333321....111.....1111012333333334457888999******************* PP

                    H----SS-HHHHHHH CS
  GDP_Man_Dehyd 317 LgWkpkvsfeelvre 331
                    LgWk++ ++e+ +++
     KKY15601.1 382 LGWKATHTLEDACED 396
                    ***********9987 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.6   0.0   6.8e-37   1.2e-33       2     208 ..       7     256 ..       6     260 .. 0.90
   2 !   10.4   0.0   0.00019      0.33     204     241 .]     296     334 ..     276     334 .. 0.83

  Alignments for each domain:
  == domain 1  score: 116.6 bits;  conditional E-value: 6.8e-37
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHHH.T-SEEEE--S.-............--HHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfkee.qpdavihlAa.v............ggvaa 79 
                 l+tG+tG+iGs +v +ll+++y+v+++d+l +++ +  ++          + ++d+td+sa+e++f+++ ++d vih+Aa              + v++
  KKY15601.1   7 LITGGTGYIGSFTVLELLQNDYDVVVVDNLYNSFDEVVNRIElisgkrpAFENVDITDASAIEAVFAKYpAIDSVIHFAAlKvrfpltgvrcarAAVGE 105
                 9*****************************88888776665589**********************************9843455554444444689** PP

                 HHHSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSS....SSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT............. CS
   Epimerase  80 ssedpadfieknlqgtlnlleaarkagvkrllflsSsevYGkdae....qpkeettltgplkpnspYaaaKlageklveayaaqyg............. 161
                 sse p d++ +n+ gtlnll+ + k++v +++f sS++vYG+ ++    +p  e++   pl p++pY+ +K+++e  ++++ +++              
  KKY15601.1 106 SSEIPLDYYFTNVYGTLNLLKSMAKHNVYNIVFSSSATVYGDATRfpnmIPIPEDC---PLGPTNPYGNTKMTVELAITDFINSQRtnlkkagkdaead 201
                 ********************************************97775579999*...**********************9999779*********** PP

                 .-EEEEEEESEEESTT.......S-TTSTTSHHHHHHHHHHTTS.SSEEEETTST- CS
   Epimerase 162 .lnaiilrlfnlyGpr.......ngegevsrvipalirkilegk.qevtllgdgta 208
                  +n   lr+fn  G +       +++g + +++p l++++++gk ++++++gdg+ 
  KKY15601.1 202 kWNGALLRYFNPAGSHpsgimgeDPQGIPFNLLP-LLAQVATGKrEKLLVFGDGKT 256
                 ******************9999777777999999.77788888889********86 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00019
                 TTST-EEEEEEHHHHHHHHHHHHHHHTT-STTE.EEEES CS
   Epimerase 204 gdgtalRdflyveDvaeaillvlehvdagdkge.iyniG 241
                 +dgta Rd++++ D+  ++l +l+  ++  +g  ++n+G
  KKY15601.1 296 HDGTAIRDYIHILDLSAGHLSALNYLRDHHPGVrAWNLG 334
                 59*********************9977644332566665 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.1   1.2e-12   2.1e-09       1     157 [.       7     180 ..       7     194 .. 0.72

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.2e-12
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlD..lrespelleelskvnvkk..viegDvtdkdkleealeg...vdvvihlaslv...dva......... 80 
                 ++tGg+G++G+  v eL++ +   +v v+D   +  +e+ ++++ +  k   + ++D+td++ +e++  +   +d vih a+l    +++         
  KKY15601.1   7 LITGGTGYIGSFTVLELLQND--YDVVVVDnlYNSFDEVVNRIELISGKRpaFENVDITDASAIEAVFAKypaIDSVIHFAALKvrfPLTgvrcaraav 103
                 69*****************99..5999**9653444555555555444446799***********998753337999**99875222223111111111 PP

   3Beta_HSD  81 gklte..deimkvnvkGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklv 157
                 g+ +e    ++  nv+GT n+l++  k++v  +v+ Ssa v g+ ++  +++   E+ ++   ++++y ++K   E ++
  KKY15601.1 104 GESSEipLDYYFTNVYGTLNLLKSMAKHNVYNIVFSSSATVYGDATRFPNMIPIPEDCPL--GPTNPYGNTKMTVELAI 180
                 2111111247889*******************************9888888877776554..46678888888777666 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   3.3e-10   5.9e-07       2     128 ..       7     141 ..       6     219 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 3.3e-10
                      EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT...T-SEEEE-----.-HHHH CS
  Polysacc_synt_2   2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel.kvdvvfhaAAlK.hVPlv 93 
                      l+tG++G iGs  v ++l+++   ++++++  ++ +e+ +++ e ++ k+  +e      d++d++ +e ++ ++  +d v+h AAlK + Pl 
       KKY15601.1   7 LITGGTGYIGSFTVLELLQNDY-DVVVVDNLYNSFDEVVNRI-ELISGKRPAFE----NVDITDASAIEAVFAKYpAIDSVIHFAALKvRFPLT 94 
                      8*****************9887.5778899999999999987.45666666666....68************998579**********646664 PP

                      ............HHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE CS
  Polysacc_synt_2  94 ............eenpleaiktNvlgtenvieaaieagvkkvvliSt 128
                                   e pl+   tNv+gt n+++   +++v ++v+ S+
       KKY15601.1  95 gvrcaraavgesSEIPLDYYFTNVYGTLNLLKSMAKHNVYNIVFSSS 141
                      111112222211345677789*********************99886 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   3.5e-10   6.3e-07       3     136 ..       6     141 ..       4     149 .. 0.72

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 3.5e-10
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.........S--S CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.........tgsg 91 
                  l+tG+++ IG  ++ el++++++vvvvd+  +   ev++ ++   g++  + +vD+td++++ea+++k    +  +d +++ A++            +
  KKY15601.1   6 CLITGGTGYIGSFTVLELLQNDYDVVVVDNLYNSFDEVVNRIELIsGKRPAFENVDITDASAIEAVFAK----YPAIDSVIHFAALkvrfpltgvR-CA 99 
                 69*****************************************99999999*********999988765....69999999999995544443211.11 PP

                 SGGGCSHHH.HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEE CS
   adh_short  92 pfselseee.wervievNltgvflltravlpamlkqssGrIvnvsS 136
                  ++  +++e   +++ +N+ g+++l ++    m k++  +Iv+ sS
  KKY15601.1 100 RAAVGESSEiPLDYYFTNVYGTLNLLKS----MAKHNVYNIVFSSS 141
                 1111111111233344555555555444....44556666666555 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.3e-08   4.1e-05       3     138 ..       6     182 ..       4     191 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.3e-08
                    EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT......................T--TTSHHHHHHHHHHH.--SEEEE----......--HHHH.. CS
  RmlD_sub_bind   3 ilvtGanGqlGseLakqlaeeglevlaltre......................eldltdaeavaellkea.kpdvvvnaAAy......tavDka.. 67 
                     l+tG++G +Gs  + +l +++++v+ +++                       ++d+tda+a+++++++    d v++ AA       t v  a  
     KKY15601.1   6 CLITGGTGYIGSFTVLELLQNDYDVVVVDNLynsfdevvnrielisgkrpafeNVDITDASAIEAVFAKYpAIDSVIHFAALkvrfplTGVRCAra 101
                    69**********9999999999******887899*********************************88625689*****9633333345555422 PP

                    ...HHS..HHHHHHHHTHHHHHHHHHHHHCT-.EEEEEEEGGGS-S-....TTS-B-TTS----SSHHHHHHHHHHHHHHH CS
  RmlD_sub_bind  68 ...Ese..eeaayavnaeavealAeaaaavga.lLihvStDyVFdGe....kkrpYeeddetsPlnvYGrtKlaGEqavla 138
                       Es   +   y  n+ ++ +l +  a++++  +++ S+  V+  +    +  p  ed + +P n YG+tK+  E a+ +
     KKY15601.1 102 avgESSeiPLDYYFTNVYGTLNLLKSMAKHNVyNIVFSSSATVYGDAtrfpNMIPIPEDCPLGPTNPYGNTKMTVELAITD 182
                    233443336667788*******99998888872577778888885555877777899********************9986 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.7e-07   0.00048       1     144 [.       4     148 ..       4     152 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.7e-07
                 SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TT CS
          KR   1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklle 98 
                 gt litGG+G +G  ++  l+++    +v+        ++ ++ ++++e   g +  + ++D++d++a+ea+++++    p+i  vih A +    +l+
  KKY15601.1   4 GTCLITGGTGYIGSFTVLELLQNDYDVVVVDNLY----NSFDEVVNRIELIsGKRPAFENVDITDASAIEAVFAKY----PAIDSVIHFAALKVRFPLT 94 
                 899******************9988777765555....334445666665447888999**************999....699*****99876655555 PP

                 T--HHHHH.........HHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--T CS
          KR  99 emtaedle.........qvlapKvkGawnLhelledesldffvlfSSiagllgsa 144
                  +  ++ +           +   v G+ nL + ++++++ + ++fSS a+++g a
  KKY15601.1  95 GVRCARAAvgesseiplDYYFTNVYGTLNLLKSMAKHNV-YNIVFSSSATVYGDA 148
                 433332221111111113455678899998888887666.456677778888766 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   5.4e-05     0.097       1      24 [.       8      31 ..       8      64 .. 0.88
   2 !    5.7   0.0     0.004       7.2     109     188 ..     115     181 ..     101     192 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.4e-05
                   EE-TTSHHHHHHHHHHHHHS-.TE CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevk 24
                   +TG+TG++G++ + +LL+++ +v 
     KKY15601.1  8 ITGGTGYIGSFTVLELLQNDYDVV 31
                   8*****************998753 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.004
                    HHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHHHH CS
  NAD_binding_4 109 rvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEklvr 188
                     +Nv Gt ++l+  +k +    +++ S+a+v+g+ + ++ +           +    ++   g +n Y ++K+  E  + 
     KKY15601.1 115 FTNVYGTLNLLKSMAKHNVY-NIVFSSSATVYGDAT-RFPN-----------MIPIPEDCPLGPTNPYGNTKMTVELAIT 181
                    59*********977766666.8999999*9999998.5522...........4445666677777888888877776665 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.1e-06    0.0074       1     106 [.      10     149 ..      10     159 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.1e-06
                     TTTSHHHHHHHHHHHHC-T-EEEEEETT........HHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES-..................- CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRn........peklaeleaeeglevvegdvtdvedlaealkgadaVvsal..................g 69 
                     G+tG +G+  v ell++ +++v+ +v n         ++++ l + ++     +d+td+++++++++ + a+ s +                  +
      KKY15601.1  10 GGTGYIGSFTVLELLQN-DYDVV-VVDNlynsfdevVNRIE-LISGKRPAFENVDITDASAIEAVFAKYPAIDSVIhfaalkvrfpltgvrcarA 101
                     9****************.69986.55664334422223333.44667888888999***********7765544443334677777666555442 PP

                     -TCCHHHH..................HHHHHHHHHHCT--EEEEEEETTTTSGCG CS
  NAD_binding_10  70 gggkdeeg..................aknivdaakeagvkRfvlvsaigvgdevp 106
                            +                  + n+++ + +++v  +v+ s++ v+ ++ 
      KKY15601.1 102 -------AvgesseipldyyftnvygTLNLLKSMAKHNVYNIVFSSSATVYGDAT 149
                     .......0333344477777888899************************96543 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.7e-06    0.0085       3      76 ..       8      84 ..       6     101 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.7e-06
                     EE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH...TTTCEEEEE--TTTHHHHHHHHHTTS...SEEEE- CS
  Sacchrp_dh_NADP  3 iiGa.GsvGqavaellarhfdvdaeitvadrskeklealaaka...lgvrfeaialdaenyeavLaallkeg...dlvvnl 76
                     i G+ G++G++++ +l+++ d+  +++v+d   ++ +++++ +   +g+r  ++ +d+ + +a ++a+ +++   d v++ 
       KKY15601.1  8 ITGGtGYIGSFTVLELLQN-DY--DVVVVDNLYNSFDEVVNRIeliSGKRPAFENVDITDASA-IEAVFAKYpaiDSVIHF 84
                     66777*************8.68..8***************999999*****************.****9999888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.33s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 2804.59
//
Query:       KKY15602.1  [L=1442]
Description: putative dead deah box [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-19   70.7   0.3    1.5e-18   67.0   0.0    2.9  2  HA2            Helicase associated domain (HA2)
    7.5e-15   55.2   0.0    1.7e-14   54.1   0.0    1.7  1  RWD            RWD domain
    2.1e-11   44.1   0.0    5.2e-11   42.9   0.0    1.7  1  Helicase_C     Helicase conserved C-terminal domain
    2.1e-09   37.4   0.2    4.1e-09   36.5   0.2    1.4  1  DEAD           DEAD/DEAH box helicase
    2.7e-09   36.7   2.3     0.0022   17.8   0.2    2.9  3  UBA            UBA/TS-N domain
    5.8e-09   36.2   0.0    1.3e-08   35.0   0.0    1.6  1  OB_NTP_bind    Oligonucleotide/oligosaccharide-binding (OB)-f
      0.001   19.1   0.0     0.0028   17.7   0.0    1.7  1  ResIII         Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
       0.01   16.2   0.1      0.021   15.2   0.1    1.5  1  AAA_19         AAA domain
      0.012   14.7   0.0      0.023   13.8   0.0    1.3  1  T2SSE          Type II/IV secretion system protein
      0.013   15.7   0.0      0.034   14.3   0.0    1.7  1  dsRBD2         Double-stranded RNA binding domain 2
      0.014   15.1   0.0      0.035   13.9   0.0    1.6  1  AAA_29         P-loop containing region of AAA domain
      0.027   15.1   0.1      0.027   15.1   0.1    2.6  1  Ribosomal_60s  60s Acidic ribosomal protein
       0.05   12.9   0.1        0.1   11.9   0.1    1.4  1  ATPase         KaiC
      0.051   14.0   0.0       0.24   11.9   0.0    2.2  1  RuvA_C         RuvA, C-terminal domain
       0.29   11.6   2.1       0.38   11.2   0.1    2.2  2  AAA_23         AAA domain
       0.51   10.6   4.1         11    6.2   4.1    2.6  1  AAA_22         AAA domain


Domain annotation for each model (and alignments):
>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1       1.2   1.3e+03      60      94 ..     202     234 ..     192     247 .. 0.58
   2 !   67.0   0.0   1.4e-21   1.5e-18       1      78 [.    1030    1121 ..    1030    1162 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.2
         HA2  60 veeifleeneeekeeeeeeeekakkkrkeeekarr 94 
                 + ++f+ ++e ++ ++e+  ek++ + ++e+++++
  KKY15602.1 202 AADPFVAKQERDAAKAEA--EKRRLALAKENEKAA 234
                 568999888877777663..222222222222222 PP

  == domain 2  score: 67.0 bits;  conditional E-value: 1.4e-21
         HA2    1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeee.................e 78  
                  Al+lL+++gAL+ +g+lT+lGr +a +P + r+ak+L++++ +  gcl++++ti+++lsv+++f++++++++e +++                  
  KKY15602.1 1030 ALQLLHQIGALE-DGHLTALGRYLALIPADLRCAKLLVYGSIF--GCLEPCLTIASILSVKSPFVSPRDKREEAQAArnafsdgtgdllldlkaY 1121
                  89*********6.7**************************777..***********************988776665666666665555444330 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   1.5e-17   1.7e-14       2     114 ..     418     516 ..     417     518 .. 0.90

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 1.5e-17
                 HHHHHHHHHHHHSTTTCCCCHT--EE--S-EEEEEEECECCCC....TT-CEEEEEEEEE-SS.TTSS--EEEEEECCSS-HHHHHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD   2 eqeqEleaLesIypdefevienenysikleikikldededeedsefeekkkpslkleiklpee.YPeeaPiislsstenlpkeqvksleekleelaeen 99 
                 ++++Ele+LesI++d f   +  + s    +++ l+++++          + s++++++ p+  YP+++P +sl s++ +p++ ++s ++k  + a+e 
  KKY15602.1 418 QWQEELETLESIFGDRFASDS--PTS----VTVLLSLPNNT---------DKSIQVKFTKPPGpYPDVLPTLSLLSKD-VPAYIRLSATRKSLDWAKES 500
                 799**************6666..566....77999999776.........568*********88**************.********999999999999 PP

                 .TTS--CHHHHHHHHH CS
                 .xxxxxxxxxxxxxxx RF
         RWD 100 .lgepvifalidwlke 114
                  lgep+ f ++dwl++
  KKY15602.1 501 lLGEPMMFGIVDWLET 516
                 9*************86 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   4.6e-14   5.2e-11      12     110 ..     848     965 ..     835     966 .. 0.87

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 4.6e-14
                 HTTTTSEEEEEESSHHHHHHHHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH.......... CS
  Helicase_C  12 leeeggkilifvntidrlekvklllekk...gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv.......... 97 
                 l  ++g ilif++ + +++  + l+  +   +i +++lh++l  +e++ ++      +++v+ at+vae++i+i++v  Vi+ +  +++          
  KKY15602.1 848 LGDKDGAILIFLPGTLEID--RSLNAVSaipNIYALPLHASLMPSEQKLVFLPAPGRKRKVIAATNVAETSITIEDVVAVIDTGRVKETvydsenrvvr 944
                 467899************9..66633335679**********************888888**************************8877899999999 PP

                 ........HHHHHHHTTSSST CS
  Helicase_C  98 ........tsyiqriGRtgRa 110
                         + ++qr+GR+gR+
  KKY15602.1 945 leevwasqAACKQRRGRAGRV 965
                 99****99************7 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.2   3.7e-12   4.1e-09       5     170 ..     599     755 ..     595     760 .. 0.81

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 3.7e-12
                 HHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHH.HTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   5 aeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkk.fkkyidlrvlliiggvaardqlskldngvdivv 102
                 +++i ++ + +  ++++eTGsGK++  +  +l+ ++++ +  g  +l+  P r  a   +++++  ++  ++ ++  ii g+++      + + ++i++
  KKY15602.1 599 EAVITEVKTHQVTIISGETGSGKSTQSVQFILDDMIKDLKGAGANILCTQPRRISALGLADRVSAeRCTSVGDEIGYIIRGDSK------ITAATKITF 691
                 6788888888999**********************999888899******************9651455577677788999877......5455888** PP

                 EEHHHHHHHHHCTSSH..CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 103 gtpgrlddllstgkln..lsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                 +t+g l++ l++  ++  l++++ +V+DE+++ + +   df+ ++l+      +d + + +v+++SATl 
  KKY15602.1 692 MTTGVLLRRLQSFDMSgsLQDISHIVVDEVHERSLD--TDFLLALLRDA---LQDNP-HLRVVLMSATLD 755
                 ******998854554455*************97776..68888888777...34444.344*******97 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.1e-06    0.0024       9      37 .]     302     329 ..     298     329 .. 0.95
   2 !   17.8   0.2     2e-06    0.0022       3      37 .]     361     395 ..     360     395 .. 0.94
   3 ?   -2.2   0.0       3.7   4.2e+03       8      14 ..     824     830 ..     823     831 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.1e-06
                 HHHTTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA   9 LveMGFdreevveALratgnNeErAveyL 37 
                 Lve+GF  ++++eAL++++ + E A+e+L
  KKY15602.1 302 LVELGFRQSHIEEALEQCK-DQEEALEWL 329
                 9******************.********9 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 2e-06
                 HHHHHHHHHTTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA   3 eeaiqrLveMGFdreevveALratgnNeErAveyL 37 
                 e++i rL + G++ +e+++A+r ++ Ne++A+ +L
  KKY15602.1 361 ESSIRRLAAAGYSADECEDAYRESNSNEDLAAAIL 395
                 789****************************9765 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.7
                 HHHHTTS CS
         UBA   8 rLveMGF 14 
                 ++++MGF
  KKY15602.1 824 TIQNMGF 830
                 799**** PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   1.2e-11   1.3e-08       1      80 [.    1201    1330 ..    1201    1332 .. 0.74

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 1.2e-11
                   HHHHHHHHHTTCEEE.......................................EEETTCC.....EEETTT.........CEEEEE-TTSTTTT. CS
  OB_NTP_bind    1 lraillaGlypqiar.......................................kdpskkd.....yktart.........ktrvfihpsSvlak. 42  
                   lra+++ +l pqiar                                        dps+++          t           r f hps+ +++ 
   KKY15602.1 1201 LRALIAGSLSPQIARidfpskkfaasitgaveldpeartikyfdhppllpstttADPSNHNdaktpP----TptpqlsptyTPRLFPHPSTPYFHh 1292
                   79************77777777777777777777777777777777766666664443333432230....13344455559************85 PP

                   T...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHHS CS
  OB_NTP_bind   43 nekekepewvvytelvettklylrdltaidpawLllfa 80  
                       ++ ++v y +++ t+kl++rdlt+ + ++Lllf+
   KKY15602.1 1293 PTYPSTTTFVSYFSKLHTSKLFIRDLTPFNLYTLLLFC 1330
                   33345556****************************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.5e-06    0.0028      14     169 ..     600     754 ..     574     756 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.5e-06
                 HHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S........-EEEEESSHHHHHHHHHHGGGGTGG.....GEEEESSS-B--.......-SEEE CS
      ResIII  14 nlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee...kflflvprkslleqtleefkkflseayke.igkkvsgdkkkakekdstnkkilv 108
                 +++ ++  k ++  +i  +TG+GK+  ++++i   + k  +    ++l   pr++    + ++++    + + + ig +++gd+k+        +ki++
  KKY15602.1 600 AVITEV--KTHQVTIISGETGSGKSTQSVQFILDDMIKDLKGagaNILCTQPRRISALGLADRVSAERCTSVGDeIGYIIRGDSKIT-----AATKITF 691
                 333333..6888899************988886644442222467*********999999998866666655555************.....99***** PP

                 EEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T.....TTHHHHHT---SEEEEEESS- CS
      ResIII 109 ttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk.....swreilekfkeavllglTATp 169
                 +t+  l +++   ++ + + + + +  i++DE+H  + ++       r +l+ +++  ++ ++AT+
  KKY15602.1 692 MTTGVLLRRL---QSFDMSGSLQDISHIVVDEVHERSLDTdfllaLLRDALQDNPHLRVVLMSATL 754
                 **********...9999999999999********988873455547888899999999******97 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.1   1.8e-05     0.021       3     129 ..     599     742 ..     597     749 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.8e-05
      AAA_19   3 eav.e.alkekvllvtaGpGtGK.TrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae....................atTiHrlall 78 
                 eav +   +++v ++ +  G+GK T+ ++ i+  +++  + + ++il+  + + +a  l++r+    ae                    a T  +++++
  KKY15602.1 599 EAViTeVKTHQVTIISGETGSGKsTQSVQFILDDMIKDLKGAGANILCTQPRRISALGLADRV---SAErctsvgdeigyiirgdskitAAT--KITFM 692
                 666333456778888899*****66789999999999999999******************99...44434466666777766666533222..23224 PP

      AAA_19  79 dfddlltealelleeaeeekklqeeellivDEfqd..vd.elqyrLlkallgek 129
                 ++  ll      l++ + +  lq+  +++vDE+ +  +d +   +Ll+  l+++
  KKY15602.1 693 TTGVLL----RRLQSFDMSGSLQDISHIVVDEVHErsLDtDFLLALLRDALQDN 742
                 333333....3334567889998889******9862255566667777766565 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     2e-05     0.023     115     145 ..     586     624 ..     549     637 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2e-05
       T2SSE 115 k........ekiaevlrkavrerglilvsGgTgsGKttl 145
                           +++e++ + v+++++ ++sG TgsGK+t 
  KKY15602.1 586 LharqglpaWNVREAVITEVKTHQVTIISGETGSGKSTQ 624
                 04444555567888999999*****************96 PP

>> dsRBD2  Double-stranded RNA binding domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     3e-05     0.034      26      62 ..      77     113 ..      74     130 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3e-05
      dsRBD2  26 nWrGsfPrelLcsfCrqhrLsePvfsissapvkssse 62 
                 +W G++P+ lL++ C++++  +P fs+  +p    ++
  KKY15602.1  77 SWTGKLPQTLLSEHCQKQKWMKPDFSMRRVPGGGYQS 113
                 7**************************9987654443 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.1e-05     0.035      12      37 ..     598     623 ..     590     631 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.1e-05
      AAA_29  12 fdghtieidlkgatlltGpsGsGKST 37 
                  +    e++++++t+++G++GsGKST
  KKY15602.1 598 REAVITEVKTHQVTIISGETGSGKST 623
                 555667888889*************9 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.1   2.4e-05     0.027      48      86 ..    1392    1429 ..    1369    1430 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.4e-05
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX--SS--ST CS
  Ribosomal_60s   48 aaaaaaaaaaaaaaaaaaaeekkkeeeeeEeedddmGfg 86  
                     +aa a+a++   +++ + ++ek + +ee Eee+d m ++
     KKY15602.1 1392 SAALAPAPGDSDSDGNDHEDEKMNNKEE-EEEEDKMIID 1429
                     678999****************999999.7888888655 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   9.2e-05       0.1      19      46 ..     608     635 ..     601     640 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.2e-05
      ATPase  19 grvvlitGepGtGKtifalqFlikgaek 46 
                  +v+ i+Ge+G+GK++ + qF++  + k
  KKY15602.1 608 HQVTIISGETGSGKSTQSVQFILDDMIK 635
                 6899******************987655 PP

>> RuvA_C  RuvA, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00022      0.24       6      33 ..     298     324 ..     298     330 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00022
                 HHHHHHHCTS-HHHHHHHHHHHHC-TTS CS
      RuvA_C   6 aveALlaLGYkekeaekAvakvlanpga 33 
                 av +L+ LG+ +  +e+A+++ ++ +++
  KKY15602.1 298 AVKGLVELGFRQSHIEEALEQCKD-QEE 324
                 7999******************84.333 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       6.8   7.6e+03     171     171 ..     239     239 ..     203     333 .. 0.52
   2 ?   11.2   0.1   0.00034      0.38      19      34 ..     608     623 ..     599     625 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 6.8
      AAA_23 171 l 171
                 l
  KKY15602.1 239 L 239
                 1 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00034
      AAA_23  19 kgltlItGpNGaGKTT 34 
                 + +t+I+G++G+GK+T
  KKY15602.1 608 HQVTIISGETGSGKST 623
                 689************9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   4.1      0.01        11       3      29 ..     606     632 ..     603     756 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.01
      AAA_22   3 ktagilvvtGesGtGKTtllrrlleql 29 
                 kt++++++ Ge+G+GK+t   ++   +
  KKY15602.1 606 KTHQVTIISGETGSGKSTQSVQFILDD 632
                 47899************9877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.07u 0.35s 00:00:01.42 Elapsed: 00:00:00.56
# Mc/sec: 7740.74
//
Query:       KKY15603.1  [L=148]
Description: putative stress response rci [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-22   78.8  10.8    3.2e-22   78.5  10.8    1.1  1  Pmp3      Proteolipid membrane potential modulator


Domain annotation for each model (and alignments):
>> Pmp3  Proteolipid membrane potential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5  10.8   1.8e-26   3.2e-22       1      48 [.       5      53 ..       5      54 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 1.8e-26
        Pmp3  1 dillillaiilPPlaValksG.csadllinilLtllgylPgviHAfyii 48
                di+l +laii+PP+aV++ksG cs+d +inilL++lgylPg+iHA+yii
  KKY15603.1  5 DIFLGILAIIFPPIAVWIKSGiCSCDSFINILLCMLGYLPGLIHAWYII 53
                89**********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 1010.19
//
Query:       KKY15604.1  [L=719]
Description: putative pre-rrna processing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-18   64.3   4.4      1e-14   54.0   0.2    3.8  3  NUC153    NUC153 domain


Domain annotation for each model (and alignments):
>> NUC153  NUC153 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.3   0.0     0.004        72       1      13 [.      27      39 ..      27      41 .. 0.90
   2 !    6.7   0.1   0.00035       6.2       1      13 [.      52      64 ..      52      65 .. 0.95
   3 !   54.0   0.2   5.8e-19     1e-14       1      29 []     628     656 ..     628     656 .. 0.98

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.004
      NUC153  1 DpRFkalFedhdF 13
                DpRF+ + +d+ +
  KKY15604.1 27 DPRFAGIQNDPRY 39
                9*****9999977 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00035
      NUC153  1 DpRFkalFedhdF 13
                D RF+ + +d+dF
  KKY15604.1 52 DKRFSGMLKDEDF 64
                99*********** PP

  == domain 3  score: 54.0 bits;  conditional E-value: 5.8e-19
      NUC153   1 DpRFkalFedhdFaIDptspeFkktnpmk 29 
                 DpRF++l+e+h+FaIDpt+p+Fk t++mk
  KKY15604.1 628 DPRFARLYENHEFAIDPTNPKFKGTEGMK 656
                 9***************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1821  (0.101567); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.49
# Mc/sec: 4388.81
//
Query:       KKY15605.1  [L=381]
Description: putative norsolorinic acid reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.5e-72  241.7   0.0    1.1e-71  241.5   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.5   0.0     6e-76   1.1e-71       1     292 [.      30     330 ..      30     332 .. 0.98

  Alignments for each domain:
  == domain 1  score: 241.5 bits;  conditional E-value: 6e-76
                   .EEEE-SSS-ST......TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE.........--SSSTTSSSS-H CS
  Aldo_ket_red   1 elglGtwqlgsk.....eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv.........dlrdaeiksglsk 83 
                   +++lG++++g       ++ +k+  +e+l+ + ++G nf+DtA+ Y++ +se++lGe++++ r+ r++++iatK          d+++++++ g ++
    KKY15605.1  30 PICLGAMNFGEAwkgamGTCAKDNTFEMLDFFKSHGGNFIDTANNYQNEESETWLGEWMAQ-RDCRDQMVIATKYttgfkgylgDKMIQANHGGNNA 125
                   79********99*************************************************.*********************************** PP

                   HHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT-HHHHTTHH CS
  Aldo_ket_red  84 eniresleeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynllreleeegll 176
                   +++  s+e+slk+L+tdy+D+l++H++ +++p ieev+ +l++lv +Gk+ ++G+S +++++++ka    ++++  ++v++q +++  ++ +e++++
    KKY15605.1 126 KSMKISVEASLKKLQTDYIDILYVHWWSYDTP-IEEVMHYLNDLVVSGKVIYLGISDTPAWIVSKAntyaRAHGLRPFVVYQGQWSAAQRSFEREII 221
                   ********************************.**************************************************************** PP

                   HHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHH CS
  Aldo_ket_red 177 elckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqledn 273
                   ++c+++g+++ ++++lggG++++++q +++  +k +++       t+ +l++++ l+e+a+ +g  ++ +al+y+l++ + +++i g +++++le+n
    KKY15605.1 222 PMCRAEGMAIAPWGALGGGMFKTEEQFKNEDRRKMREP-------TDAQLKLCKVLEEIANRKGTVMTSIALAYVLHKTPHVFPICGGRSVKHLEQN 311
                   ***********************999999988777776.......6899************************************************ PP

                   HGGGG----HHHHHHHHHH CS
  Aldo_ket_red 274 ldalelklseeevaeldel 292
                   ++al lkl+ e++ e+d +
    KKY15605.1 312 IQALGLKLTREDIVEIDDA 330
                   ****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2602.54
//
Query:       KKY15606.1  [L=781]
Description: putative topisomerase ii associated protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
          0 1109.2   5.3          0 1109.1   5.3    1.0  1  PAT1      Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PAT1  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1109.1   5.3         0         0       1     819 [.       1     781 []       1     781 [] 0.87

  Alignments for each domain:
  == domain 1  score: 1109.1 bits;  conditional E-value: 0
        PAT1   1 msFfgfdttlprd.ahntaapGfsqahdpfaglskaeeed......ddaldFedtYdgLgdqLdetdDafNddTFggegggdevsakkvgkdfDffgqT 92 
                 msFfgfdttlp+  +   a++G+++++dpfa++s+a++ +      d+ l+F+dtYdgLgdqLdet+D++NddTFgg+ g d   ++kvgkdfDffgqT
  KKY15606.1   1 MSFFGFDTTLPKGaGRPGASQGIFEHRDPFAEVSRAHKLQafqdsqDQPLEFDDTYDGLGDQLDETGDDLNDDTFGGGFG-DGPVQQKVGKDFDFFGQT 98 
                 9***********9888999***************998866676677999**************************98876.566699************ PP

        PAT1  93 akvadaieeEqlrfsrqqpaakasekaaaaelkevkkasqaseqkskpvrtgyekykepepipdlqvdaslWgvaekkaaasaaapevaaaaaslasas 191
                 akv+d+i +Eq+r+++++  +++            +++ + + +++kp +tgye+y++p+ ip++ +++s+Wg a++++++s+  p + a++as  +++
  KKY15606.1  99 AKVSDVIGQEQVRYNLNHAPTNE------------REQPNFQPAPQKPRKTGYERYQDPGFIPEISAKSSVWGNAASRQVSST--PLTLAQQAS--ATQ 181
                 ****************9988841............222223344567***************************999998885..444444443..567 PP

        PAT1 192 rkvlsleEvEaamraqakkkaaqaaaaaaas.qqPaaeqaeqaeaaaqaakaeqaqqapesakeqqqeqeqaaqaqqkkeqgkpvtilqrpqskqakpa 289
                 +k++sleEvEaamraq   + ++++  +a +  +P+ eq +q     q+    q +q +++  +q ++   ++ aq  +++ ++++ lqr+q+ +++  
  KKY15606.1 182 KKMMSLEEVEAAMRAQNLPHMPTQPPPQAYPtPFPQPEQYSQY--PPQNF--PQPRQPQMQLPQQIRPPPPPQPAQDLAKRLQAPQLLQRQQQGPPQ-- 274
                 ****************988877766555433244543333332..22222..222333333334444444444555555556666666666554222.. PP

        PAT1 290 epsasseaqeakqqappakvqptqilqnpnrlaarlelsqkeqaaaqaapeqeakrqqssagkqaqiithpqqlaqlseeekaayLeeeakrakRnhki 388
                      ++    +++    +++p qilqnpnr++   +++ k  +             + +a+ + ++it+p+ql+qlse++++ayLee+akrakRnhki
  KKY15606.1 275 -----PQ----ANH---GPQKPLQILQNPNRTPPAQSATGKG-S---------GASGAPAAAAALPVITNPHQLMQLSEDQRRAYLEEDAKRAKRNHKI 351
                 .....12....112...23579********993333111111.1.........122234456679********************************** PP

        PAT1 389 fllskdnGlmTpqDKnFitRiqlqqLvsAtGnpadqgsdeslseDFYYqVysqirggqrqnpeqplsnFaqTYLfqtgsRqggarrrergaenhvqrme 487
                 flls+ nGlmTpqDKnFitRiqlqqLv+AtG ++d + +++l+eDFYYqV+sqirg++rq+p+qpl++FaqTYLfqtgsR+gg+rr++ +++nh+qrm+
  KKY15606.1 352 FLLSRGNGLMTPQDKNFITRIQLQQLVTATGTTTDPDPEAALAEDFYYQVHSQIRGAPRQHPTQPLGHFAQTYLFQTGSRSGGHRRQQINGDNHMQRMQ 450
                 *************************************************************************************************** PP

        PAT1 488 qqvqraVeaAKnkPKnkqLvieGsLGKisfsnaktPkpLLnikrteseedakrpssakkkaksseasldrksiLrniEkvYstlmkledheRkmpppla 586
                 qqvqraVeaAK kPKnkqL+ieGsLGKisfsnaktPkpLLnikr e +++a rpssak++ ++++  +d+k+iLrniE+vYstlmk+ed+eR+mppp++
  KKY15606.1 451 QQVQRAVEAAKLKPKNKQLIIEGSLGKISFSNAKTPKPLLNIKRAEVTDQA-RPSSAKRHGTEQSR-TDQKAILRNIENVYSTLMKMEDQERRMPPPPN 547
                 **********************************************99976.*****999777744.8******************************9 PP

        PAT1 587 eesdaeleekhkeWkeklqelneklWeeLkvhepi..gattvhPFiallsfpKGkkaipRifrhlskeqrvtiLtmivvhlDqLdvvrkaqvtsgetql 683
                 + sda ++++h+eW+++++elneklW++Lkv epi  g+  +hPFia+ls++KGkka+pRifrh+++eqrvtiLtmivvhlDqLdvv +aq+++getq+
  KKY15606.1 548 D-SDAGTIQAHMEWRQTMSELNEKLWNDLKVLEPImpGSAITHPFIAFLSHSKGKKAVPRIFRHIDQEQRVTILTMIVVHLDQLDVVGRAQIAPGETQP 645
                 9.9************************************************************************************************ PP

        PAT1 684 naavreeielFsqavmpsLlaylneldldivtgllgliltklnvdliaktriGlslLTlllsRaellkqsgagseeeweeweetynklFdrleptlpei 782
                 +  +ree+elFs++vmpsLl y+ e++++iv+gl+gl+l+++nv  +++t++Gl++LT+llsRaellk+ ga+++++w++w+++yn+lFd+lep ++++
  KKY15606.1 646 SPVIREEVELFSNVVMPSLLGYITEAPINIVIGLMGLVLDHTNVIGVSRTKVGLGILTMLLSRAELLKEGGAANDQDWSQWQQLYNRLFDTLEPFMTTV 744
                 *************************************************************************************************** PP

        PAT1 783 FPgsvnsgedvyvWqlLAalgigAspdqqqrLVlavk 819
                 FPg vn+g+d+y+Wq+LAa+gigAsp+qqqrLV+avk
  KKY15606.1 745 FPGPVNAGDDMYIWQFLAAVGIGASPEQQQRLVIAVK 781
                 ************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (781 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       853  (0.0475766); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.37s 00:00:01.20 Elapsed: 00:00:00.58
# Mc/sec: 4075.59
//
Query:       KKY15607.1  [L=416]
Description: putative glycolipid 2-alpha-mannosyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.5e-132  440.2   7.4   5.5e-132  439.9   7.4    1.0  1  Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase
  ------ inclusion threshold ------
       0.14   12.4   1.0       0.24   11.6   1.0    1.4  1  EGF_3            EGF domain


Domain annotation for each model (and alignments):
>> Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  439.9   7.4  6.1e-136  5.5e-132      56     325 .]      83     364 ..      35     364 .. 0.92

  Alignments for each domain:
  == domain 1  score: 439.9 bits;  conditional E-value: 6.1e-136
  Glyco_transf_15  56 e...........nAtllalvrnselakilrsikkvekrFnkkfnYpyvfindepftekfkekieklveeadvefgeipkeewsyPefideekaa 138
                                  nAt+++l+rns++++i rsi++ve+rFn+k+nY++vf+nd+pf+e+fk+ +++lv+ +++++g+i +++wsyP++id++kaa
       KKY15607.1  83 TglaetasgervNATFVTLARNSDIWEISRSIRQVEDRFNRKYNYDWVFLNDKPFDENFKKVTTSLVS-GKTHYGLISEDHWSYPSHIDQDKAA 175
                      123334444556********************************************************.************************* PP

  Glyco_transf_15 139 kareelad..iaygdsesyrhmcRyysGlfykhellkkydyYwRvePdiklycdieyDvfkymkdekkiygFtlslkeieetiktlWdstkkfl 230
                      k+re++a+  i+ygds syrhmcRy+sG+f++hel+++++yYwRveP+i+l+cd++yD fk+mkd++k+y+F+lsl+e+ eti+tlWdstk ++
       KKY15607.1 176 KVREDMAQrkIIYGDSVSYRHMCRYESGFFFRHELMNNFEYYWRVEPSIELFCDVNYDPFKFMKDNGKKYSFVLSLYEYVETIPTLWDSTKTYI 269
                      ********************************************************************************************** PP

  Glyco_transf_15 231 kenkefieeknslsflsdddqdtynlCeFwsnfeigdldffrseayekfFeylDskGgffYerWgdapvhsiavslllpkdkihffedigyshd 324
                      k+++e+i+ +ns+ flsdd++dtyn+C+Fwsnfeig+l+++rs+ay ++Fe lD++GgffYerWgdapvhsia+ l l kd+ihff+di+y+h 
       KKY15607.1 270 KNHPEHIAADNSMGFLSDDGGDTYNHCHFWSNFEIGNLNWLRSKAYLDYFEQLDKDGGFFYERWGDAPVHSIAAGLTLTKDEIHFFDDIAYYHV 363
                      ********************************************************************************************97 PP

  Glyco_transf_15 325 p 325
                      p
       KKY15607.1 364 P 364
                      5 PP

>> EGF_3  EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.0   2.7e-05      0.24      14      36 .]     368     395 ..     364     395 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.7e-05
       EGF_3  14 Ctntdg...svtCtCk..egykGdGvtC 36 
                 C + ++     +C+C+  +++ + G++C
  KKY15607.1 368 CPTDEKkrlDLKCHCNpnDNFDWKGYSC 395
                 666666445599****999********* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.51
# Mc/sec: 2457.01
//
Query:       KKY15608.1  [L=188]
Description: putative 37s ribosomal protein s12 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-28   97.5   0.7      5e-28   97.0   0.7    1.2  1  Ribosom_S12_S23  Ribosomal protein S12/S23


Domain annotation for each model (and alignments):
>> Ribosom_S12_S23  Ribosomal protein S12/S23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   0.7   2.8e-32     5e-28       7     114 .]      79     184 ..      75     184 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.0 bits;  conditional E-value: 2.8e-32
                      --S-TSSTTSSEEEEEEEEEEEE---TT--S-EEEEEEEET.TSEEEEEEE-SSS..----TT-EEEEEE--.....BTTSTTEEEEBET.... CS
  Ribosom_S12_S23   7 ktksdalegapqkrGvvlekvtveakkPnsAlRkvvrvrLikngkevtafipgegalnfldEhdevlvrGirrkgkavkDlpGvrykvvk.... 96 
                      +  s+a++g p  +Gv+l++  +++kkPns  Rk ++vrL+ +g+ v  +ipgeg  ++++ h++vlvrG+r      +D pGvry++v+    
       KKY15608.1  79 RPESPAVRGRPEMKGVCLKVGITKPKKPNSGQRKTAKVRLS-SGRIVSCYIPGEG--HNVQQHSVVLVRGGR-----SQDCPGVRYHLVRgald 164
                      55799************************************.*************..***************.....9*************999 PP

                      S---T..SSSTTTTT----T CS
  Ribosom_S12_S23  97 vagvs..lkalskykkekpk 114
                      + gv    +++sky+++kpk
       KKY15608.1 165 LGGVPsrVRSRSKYGTKKPK 184
                      99998778999*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.33s 00:00:00.87 Elapsed: 00:00:00.54
# Mc/sec: 1038.69
//
Query:       KKY15609.1  [L=1808]
Description: putative rrna biogenesis protein rrp5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-71  235.2  31.1    1.1e-13   51.3   1.3   12.6 12  S1             S1 RNA binding domain
    2.9e-09   37.4   9.3    8.5e-05   22.7   0.2    4.1  4  Suf            Suppressor of forked protein (Suf)
    2.3e-07   31.2   0.0      0.022   15.3   0.4    4.0  4  TPR_19         Tetratricopeptide repeat
    3.5e-06   27.4   1.9      0.024   15.4   0.4    4.1  3  TPR_14         Tetratricopeptide repeat
    0.00027   20.8  12.1       0.36   10.8   0.1    7.4  8  RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
     0.0024   18.1   0.1        3.4    8.2   0.0    2.9  2  TPR_17         Tetratricopeptide repeat
     0.0044   17.6   0.9         26    5.7   0.2    4.3  4  TPR_6          Tetratricopeptide repeat
     0.0094   16.0   0.1        5.8    7.0   0.0    4.2  5  S1_2           S1 domain
  ------ inclusion threshold ------
       0.12   12.4   0.3        1.8    8.6   0.1    3.0  3  ID             Intracellular delivery domain
       0.18   11.0   2.7       0.63    9.2   1.3    2.4  2  TPR_15         Tetratricopeptide repeat
        8.8    4.4  15.3         15    3.6  15.3    1.3  1  Nop14          Nop14-like family


Domain annotation for each model (and alignments):
>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0027       4.5       3      60 ..     158     229 ..     156     237 .. 0.73
   2 !    9.0   0.0    0.0011       1.8       6      40 ..     268     305 ..     265     335 .. 0.84
   3 !   12.1   0.0   0.00012      0.19      10      61 ..     464     519 ..     459     522 .. 0.73
   4 !   40.6   0.8   1.5e-13   2.4e-10       2      75 .]     547     621 ..     546     621 .. 0.93
   5 !   33.9   0.0   1.8e-11     3e-08       5      75 .]     641     710 ..     638     710 .. 0.94
   6 !    8.6   0.1    0.0015       2.4       1      72 [.     723     798 ..     723     801 .. 0.83
   7 !    9.6   0.0   0.00069       1.1       3      40 ..     821     858 ..     819     885 .. 0.86
   8 !   13.0   0.1   6.1e-05       0.1       4      67 ..     927     994 ..     924     999 .. 0.85
   9 !    8.5   0.0    0.0015       2.5      22      75 .]    1053    1107 ..    1033    1107 .. 0.72
  10 !   19.7   0.1     5e-07   0.00082       3      75 .]    1119    1190 ..    1118    1190 .. 0.97
  11 !   31.6   0.1   9.6e-11   1.6e-07       4      75 .]    1214    1284 ..    1211    1284 .. 0.96
  12 !   51.3   1.3   6.5e-17   1.1e-13       2      74 ..    1301    1374 ..    1300    1375 .. 0.96

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0027
                 TTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSS..............CEESCHHHCEETTEEEEEEE CS
          S1   3 ekgevveGeVtsvtkgGafVelgngvegfvpaselsrd..............arvedpdevlkvGdevkvkv 60 
                 + g ++ G V+s++   + V l n+ +gfv   ++s                 +  d    +++G+ v+v+v
  KKY15609.1 158 APGSILLGRVSSINSQDVTVSLPNNLTGFVQPTSISPQvtaliednlnnkedFDEIDLRPYIQPGQYVRVYV 229
                 67999*************************999998776666666665544333333333455566666555 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0011
                 CEEEEEEEEEETTEEEEEET...TTEEEEEEGGGSSSS CS
          S1   6 evveGeVtsvtkgGafVelg...ngvegfvpaselsrd 40 
                   +++ V sv+++G++ +lg   ++v+gf++a++l   
  KKY15609.1 268 STIQASVRSVEDHGLIMDLGlvdENVQGFISAKDLGET 305
                 678999***************99**********99765 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00012
                 EEEEEEET.TEEEEEET.TTEEEEEEGGGSSSSCEESCH...HHCEETTEEEEEEEE CS
          S1  10 GeVtsvtk.gGafVelg.ngvegfvpaselsrdarvedp...devlkvGdevkvkvl 61 
                 +++ +v+  +G++  lg  g++gf ++s+ls+  +v+++   +  +k G + kv+++
  KKY15609.1 464 AVIDKVDGsMGLYLSLGsSGAQGFAHISNLSDQ-KVDNIsasTGAFKLGSKHKVRIT 519
                 555666668**********************99.55554000455666666666665 PP

  == domain 4  score: 40.6 bits;  conditional E-value: 1.5e-13
                 STTTCEEEEEEEEEET..TEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   2 pekgevveGeVtsvtk..gGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 +e+g vv+G++++++   g +fVel  gv+g+vp  ++s+    ++p++++++G  v ++vlkvd++rr i+l++k
  KKY15609.1 547 VEVGSVVKGKIQKLVLekGLLFVELADGVTGMVPELHMSDL-GLQHPEKKFREGSAVNARVLKVDVERRQIRLTLK 621
                 689**********8544399*******************98.******************************9876 PP

  == domain 5  score: 33.9 bits;  conditional E-value: 1.8e-11
                 TCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   5 gevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 g    G+ ++v ++Ga V+++ +v+gf+p+se+s    ++d ++++++G+ v v  ++vd d+ r+ +s++
  KKY15609.1 641 GHTAPGTLIKVRPHGAVVQFFSDVHGFLPVSEMSEA-YIKDATQHFREGQVVTVNAINVDPDAQRLTVSCR 710
                 566679999*************************98.9***************************999986 PP

  == domain 6  score: 8.6 bits;  conditional E-value: 0.0015
                 HSTTTCEEEEEEEEEETTEEEEEET.TTEEEEEEGGGSSSS..CEESCHHHCEETTEEE.EEEEEEEETTTTEEEE CS
          S1   1 kpekgevveGeVtsvtkgGafVelg.ngvegfvpaselsrd..arvedpdevlkvGdev.kvkvlkvdkdrrriil 72 
                 k+++g++v+G+V++ +++ +  +l+  +v + + + ++ +   +++++   +++vG+++ ++ vl++  +rr ++l
  KKY15609.1 723 KLKAGAIVSGTVFEKSDDDLLLRLDdIDVIARLELDHITDGseKKRRSALSKIRVGQKLqDLMVLEILSKRRIVRL 798
                 5789*********************888888888888886688899999999999998636788887777775555 PP

  == domain 7  score: 9.6 bits;  conditional E-value: 0.00069
                 TTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSS CS
          S1   3 ekgevveGeVtsvtkgGafVelgngvegfvpaselsrd 40 
                 ++g+ v+G   ++ ++G+fV + +g +g++p+s +++ 
  KKY15609.1 821 KEGKQVTGFCANIRDEGVFVCFAGGLTGLLPKSRIPST 858
                 7899999999*************************987 PP

  == domain 8  score: 13.0 bits;  conditional E-value: 6.1e-05
                 TTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSS....CEESCHHHCEETTEEEEEEEEEEETTT CS
          S1   4 kgevveGeVtsvtkgGafVelgngvegfvpaselsrd....arvedpdevlkvGdevkvkvlkvdkdr 67 
                 +g v+++ ++sv +  + Vel  +v+g + +sel +d    ++++ p + +  ++ +kv+vl+  ++r
  KKY15609.1 927 VGVVIKARIFSVKDTQLNVELAKDVQGRIDISELFDDwndiKDRKRPLRIFDNKQILKVRVLGAHDAR 994
                 789********************************999888777777777778888888888766655 PP

  == domain 9  score: 8.5 bits;  conditional E-value: 0.0015
                  EEETTTEEEEEEGGGSSSS.CEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   22 Velgngvegfvpaselsrd.arvedpdevlkvGdevkvkvlkvdkdrrriilsik 75  
                  V+l  +v+g + a ++ +d     d +  + +G  +kv v+++d++++r++ls k
  KKY15609.1 1053 VNLSPNVRGRIAAMDVTDDiSLLADLEANFPIGSALKVHVTGIDVEKNRLDLSAK 1107
                  555555566666666665554444556667799*******************975 PP

  == domain 10  score: 19.7 bits;  conditional E-value: 5e-07
                  TTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1    3 ekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75  
                   kg ++ G Vt+v++  a V+l   + g v + ++++d  ++ +   l+++d v+  vl vd+ +++++ls++
  KKY15609.1 1119 TKGMILPGRVTKVSERQALVQLSDTIVGAVNLIDMADD-FIKANPLNLQKNDIVRTCVLSVDVPNKKVVLSLR 1190
                  599***********************************.********************************86 PP

  == domain 11  score: 31.6 bits;  conditional E-value: 9.6e-11
                  TTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1    4 kgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75  
                  +++v  G +t++t++G+fV l  +v++fv +++ls++   +d  e ++ ++ vk k++ vdk+++ +++s+k
  KKY15609.1 1214 VNDVRRGFITNITEKGIFVALAHNVTAFVRVANLSDR-FLKDWQEGFQRDQLVKGKIIIVDKATNHVQMSLK 1284
                  79***********************************.9******************************986 PP

  == domain 12  score: 51.3 bits;  conditional E-value: 6.5e-17
                  STTTCEEEEEEEEEETTEEEEEET..TTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEE CS
          S1    2 pekgevveGeVtsvtkgGafVelg..ngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsi 74  
                  +++g+vv+G+V +v+++G+f+ ++   +v+g++++se+++  rv+d  + +++Gd vk+kvlk++  +rr+ + +
  KKY15609.1 1301 LKIGQVVSGKVAKVEEFGVFIIVDnsTNVRGLCHRSEIADQ-RVQDARTLFSEGDAVKAKVLKIEASKRRVNFGL 1374
                  589*********************999*************9.****************************99876 PP

>> Suf  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.8       1.5   2.4e+03     224     268 ..      19      63 ..       4     155 .. 0.63
   2 !   10.7   0.0   0.00023      0.38      74     129 ..    1540    1597 ..    1533    1625 .. 0.85
   3 !    9.5   0.0   0.00054      0.88      53     117 ..    1644    1707 ..    1631    1716 .. 0.84
   4 !   22.7   0.2   5.2e-08   8.5e-05      41     140 ..    1703    1805 ..    1696    1808 .] 0.86

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.5
         Suf 224 gaagrrleqqrksessksaeaasksqkalqqqpaplprsivalls 268
                 +a+ +rl  + +   +k ++++  ++++ q+   ++p++ +++l 
  KKY15609.1  19 AASRKRLRTEGQTVKAKDRQSKPVQKDKPQTAVSSIPKESTTFLV 63 
                 333333333333322233333333333333333345555555553 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00023
         Suf   74 lkYldyLislnddnnaRvlfekvvsklskeke..akelykkfleyestfgdlssilkl 129 
                  l+Y+ + ++l ++++aR + ++++++++  ++    +++  +l+ e t+gd +si + 
  KKY15609.1 1540 LQYMAFHLELGETDQARQIAQRALQTIAVGQDaeKLNIWVAMLNLENTYGDDDSISST 1597
                  79************************987777225579***************99875 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00054
         Suf   53 kvAtkIFelGlKkFpedeefvlkYldyLisl.nddnnaRvlfekvvsklskekeakelykkfleye 117 
                  k A + F   +KkF+++++  ++Y  +L +   d ++ R l+ +++++l k++   ++ +kf+  e
  KKY15609.1 1644 K-ADELFQNMIKKFSQNPKTWINYATFLFDSqADAERGRQLLSRALQTLPKHT-HVDITSKFAALE 1707
                  4.88999999******************975168999****************.999999997655 PP

  == domain 4  score: 22.7 bits;  conditional E-value: 5.2e-08
         Suf   41 sAllEyyi.skdkkvAtkIFelGlKkFpedeefvlkYldyLislnddnnaRvlfekvvsk...lskekeakelykkfleyestfgdlssilklekRm 133 
                  +A lE+   + d + ++ IFe  l  Fp+  +  +  ld  ++  +++++R lfe++ s    ++++ +ak+ +k++l++e + gd  s   + +R 
  KKY15609.1 1703 FAALEFRSpNGDSERGRTIFEGLLDSFPKRVDLWNVLLDLELRHGEKDQVRNLFERIFSPsskIKNK-QAKHFFKRWLDFEMKEGDERSADAVKARA 1798
                  5777776425688889****************************************99862214444.4***************************9 PP

         Suf  134 eelfped 140 
                   e +++ 
  KKY15609.1 1799 VEFVKQA 1805
                  9998875 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.4   1.3e-05     0.022      14      52 ..    1525    1563 ..    1523    1567 .. 0.93
   2 ?   -2.7   0.0       5.3   8.7e+03      15      38 ..    1599    1621 ..    1596    1624 .. 0.78
   3 ?    5.0   0.0     0.022        35       9      58 ..    1644    1694 ..    1642    1698 .. 0.89
   4 ?    5.2   0.0     0.019        31       5      51 ..    1713    1759 ..    1712    1763 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.3e-05
      TPR_19   14 leqalqedpknaearllLAeallalgqldeAealLdalp 52  
                  +e++l  +p+++ ++l+++  +l+lg++d+A+++ ++++
  KKY15609.1 1525 YERLLLGEPDSSLLWLQYMAFHLELGETDQARQIAQRAL 1563
                  7899999***************************99986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.3
      TPR_19   15 eqalqedpknaearllLAeallal 38  
                  ++a  ++++ +e+  +LA +++++
  KKY15609.1 1599 KNA-CQYNDTEEIHSRLASIYIQS 1621
                  555.56788899999999999997 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.022
      TPR_19    9 eAlalleqalqedpknaearllLAeallal.gqldeAealLdalpeedpdd 58  
                   A +l+++++++  +n+  ++++A  l+ +  + +  ++lL+++++  p++
  KKY15609.1 1644 KADELFQNMIKKFSQNPKTWINYATFLFDSqADAERGRQLLSRALQTLPKH 1694
                  57789***********************99899999999999999988875 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.019
      TPR_19    5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdal 51  
                  gd ++   ++e +l+  pk  +++  L ++ l  g+ d+ ++l +++
  KKY15609.1 1713 GDSERGRTIFEGLLDSFPKRVDLWNVLLDLELRHGEKDQVRNLFERI 1759
                  677777889******************************99999887 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.4   1.5e-05     0.024       3      30 ..    1538    1565 ..    1536    1584 .. 0.87
   2 ?    6.2   0.1     0.014        22       2      34 ..    1661    1694 ..    1660    1699 .. 0.83
   3 ?    1.9   0.0      0.34   5.5e+02      14      43 ..    1712    1741 ..    1701    1762 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.5e-05
      TPR_14    3 allalaeallalGdpdeAiallrralal 30  
                  ++l++ +++l+lG++d+A+++++ral++
  KKY15609.1 1538 LWLQYMAFHLELGETDQARQIAQRALQT 1565
                  7*************************95 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.014
      TPR_14    2 eallalaealla.lGdpdeAiallrralalaPdd 34  
                  + +  +a +l+  + d ++ ++ll ral++ P++
  KKY15609.1 1661 KTWINYATFLFDsQADAERGRQLLSRALQTLPKH 1694
                  56777899988626799*************9986 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.34
      TPR_14   14 lGdpdeAiallrralalaPddaeawlllaq 43  
                  +Gd ++ +++++ +l+ +P+  ++w  l +
  KKY15609.1 1712 NGDSERGRTIFEGLLDSFPKRVDLWNVLLD 1741
                  577888888888888888888888866654 PP

>> RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   0.00022      0.36      33      57 ..     595     619 ..     589     621 .. 0.89
   2 ?    3.5   0.0     0.041        67      27      55 ..     677     706 ..     675     722 .. 0.87
   3 ?   -0.2   0.0       0.6   9.8e+02       4      29 ..     731     756 ..     728     765 .. 0.84
   4 ?   -0.9   0.0         1   1.6e+03      23      46 ..     914     937 ..     913     947 .. 0.88
   5 ?    4.6   0.0     0.019        31      23      57 ..    1073    1105 ..    1068    1107 .. 0.84
   6 ?    0.9   0.1      0.28   4.5e+02       5      25 ..    1126    1146 ..    1124    1149 .. 0.87
   7 ?   -3.1   0.0       4.7   7.7e+03      38      56 ..    1169    1187 ..    1161    1189 .. 0.78
   8 ?   -1.2   0.1       1.2     2e+03      34      56 ..    1350    1372 ..    1342    1374 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00022
  RNase_II_C_S1  33 glplGervrVrLveADvatrrvrFe 57 
                    + ++G++v  r+ ++Dv++r++r++
     KKY15609.1 595 KFREGSAVNARVLKVDVERRQIRLT 619
                    6789*******************98 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.041
  RNase_II_C_S1  27 rv.eggaglplGervrVrLveADvatrrvr 55 
                     + +++++ ++G+ v+V    +D+++ r++
     KKY15609.1 677 YIkDATQHFREGQVVTVNAINVDPDAQRLT 706
                    5555667899***************99875 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.6
  RNase_II_C_S1   4 dAvVvdvddrggtVqladPaVeArve 29 
                    +++V + +d+   ++l+d  V+Ar+e
     KKY15609.1 731 SGTVFEKSDDDLLLRLDDIDVIARLE 756
                    6899999999999***********94 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1
  RNase_II_C_S1  23 aVeArveggaglplGervrVrLve 46 
                    +V+A v++ ++l +G  +  r+ +
     KKY15609.1 914 PVDANVTALEDLSVGVVIKARIFS 937
                    89****9999*****999999766 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.019
  RNase_II_C_S1   23 aVeArveggaglplGervrVrLveADvatrrvrFe 57  
                        A +e+  + p G+++ V ++  Dv++ r++++
     KKY15609.1 1073 SLLADLEA--NFPIGSALKVHVTGIDVEKNRLDLS 1105
                     56677877..99*****************999875 PP

  == domain 6  score: 0.9 bits;  conditional E-value: 0.28
  RNase_II_C_S1    5 AvVvdvddrggtVqladPaVe 25  
                     + V+ v++r++ Vql+d  V 
     KKY15609.1 1126 GRVTKVSERQALVQLSDTIVG 1146
                     569**************8885 PP

  == domain 7  score: -3.1 bits;  conditional E-value: 4.7
  RNase_II_C_S1   38 ervrVrLveADvatrrvrF 56  
                     + vr  + ++Dv++ +v +
     KKY15609.1 1169 DIVRTCVLSVDVPNKKVVL 1187
                     667777899****999986 PP

  == domain 8  score: -1.2 bits;  conditional E-value: 1.2
  RNase_II_C_S1   34 lplGervrVrLveADvatrrvrF 56  
                       +G++v  ++ +    +rrv F
     KKY15609.1 1350 FSEGDAVKAKVLKIEASKRRVNF 1372
                     578******************99 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0021       3.4       2      34 .]    1525    1557 ..    1524    1557 .. 0.98
   2 !    6.7   0.0    0.0065        11       1      29 [.    1648    1677 ..    1648    1683 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0021
      TPR_17    2 ylkaleldPnnadaynnLAelllknGdlmtArq 34  
                  y++ l  +P+++ ++ ++  ++l++G++++Arq
  KKY15609.1 1525 YERLLLGEPDSSLLWLQYMAFHLELGETDQARQ 1557
                  9******************************98 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0065
      TPR_17    1 lylkaleldPnnadaynnLAelll.knGdl 29  
                  l+++ +++   n++ + n+A++l  ++ d 
  KKY15609.1 1648 LFQNMIKKFSQNPKTWINYATFLFdSQADA 1677
                  68999****************985344455 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2     0.016        26      10      28 ..    1546    1564 ..    1539    1565 .. 0.82
   2 ?    2.8   0.0      0.13   2.2e+02      13      32 ..    1639    1658 ..    1621    1659 .. 0.79
   3 ?   -2.2   0.0       5.3   8.6e+03      12      32 ..    1673    1693 ..    1667    1694 .. 0.80
   4 ?    3.9   0.0     0.061        99      12      32 ..    1710    1731 ..    1701    1731 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.016
                  HHHHHHHHHHHHHHHHHHH CS
       TPR_6   10 yrklgdtdkAlealerlik 28  
                  +++lg+td+A+++ +r ++
  KKY15609.1 1546 HLELGETDQARQIAQRALQ 1564
                  45689***********986 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.13
                  HHHHHHHHHHHHHHHHH-TT CS
       TPR_6   13 lgdtdkAlealerlikeYPd 32  
                  l+ ++kA e++++ ik++ +
  KKY15609.1 1639 LTPSQKADELFQNMIKKFSQ 1658
                  48899************975 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 5.3
                  HHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   12 klgdtdkAlealerlikeYPd 32  
                  ++ d+++ +++l r ++  P+
  KKY15609.1 1673 SQADAERGRQLLSRALQTLPK 1693
                  456999999**9999998776 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.061
                  H.HHHHHHHHHHHHHHHHH-TT CS
       TPR_6   12 k.lgdtdkAlealerlikeYPd 32  
                  +  gd+++ ++++e l++++P+
  KKY15609.1 1710 SpNGDSERGRTIFEGLLDSFPK 1731
                  4459*****************6 PP

>> S1_2  S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         9   1.5e+04      25      37 ..     397     409 ..     393     418 .. 0.71
   2 ?   -3.0   0.0       4.8   7.8e+03      37      56 ..     723     742 ..     722     748 .. 0.70
   3 ?    3.6   0.0     0.042        69       2      39 ..     823     860 ..     822     865 .. 0.80
   4 ?   -3.6   0.0       7.5   1.2e+04       9      23 ..    1222    1236 ..    1218    1242 .. 0.75
   5 !    7.0   0.0    0.0036       5.8       1      27 [.    1303    1329 ..    1303    1343 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 9
        S1_2  25 gevlLpkkevpee 37 
                 ++v Lp k  p e
  KKY15609.1 397 EDVSLPDKFSPGE 409
                 7888998888744 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.8
        S1_2  37 eleiGdeveVFvYtDsedrl 56 
                 +l+ G  v + v++ s+d l
  KKY15609.1 723 KLKAGAIVSGTVFEKSDDDL 742
                 56777777777777777765 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.042
        S1_2   2 GkintlkvlretdfgyfLqkdesgevlLpkkevpeele 39 
                 Gk +t     + d+g+f+   ++ + lLpk+ +p + +
  KKY15609.1 823 GKQVTGFCANIRDEGVFVCFAGGLTGLLPKSRIPSTEA 860
                 677777778899*******6666**********96654 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 7.5
        S1_2    9 vlretdfgyfLqkde 23  
                  ++ +t++g+f++   
  KKY15609.1 1222 ITNITEKGIFVALAH 1236
                  8999******98554 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.0036
        S1_2    1 iGkintlkvlretdfgyfLqkdesgev 27  
                  iG++++ kv + ++fg+f+  d+s++v
  KKY15609.1 1303 IGQVVSGKVAKVEEFGVFIIVDNSTNV 1329
                  8*****************977666555 PP

>> ID  Intracellular delivery domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.76   1.2e+03       5      32 ..     726     753 ..     718     756 .. 0.78
   2 ?    8.6   0.1    0.0011       1.8       4      23 ..     821     840 ..     821     846 .. 0.93
   3 ?   -3.5   0.0       6.8   1.1e+04       8      38 ..    1306    1339 ..    1304    1344 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.76
          ID   5 EGktyeGifagagdesfaIntkddlVic 32 
                  G++++G++   +d+ ++   +d  Vi+
  KKY15609.1 726 AGAIVSGTVFEKSDDDLLLRLDDIDVIA 753
                 4778888888888888888888888875 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0011
          ID   4 eEGktyeGifagagdesfaI 23 
                 +EGk ++G +a+++de++++
  KKY15609.1 821 KEGKQVTGFCANIRDEGVFV 840
                 7*****************98 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 6.8
          ID    8 tyeGifagagdesfaIntkddlVi...ckkeele 38  
                   ++G +a++ + +++I  ++++ +   c+++e++
  KKY15609.1 1306 VVSGKVAKVEEFGVFIIVDNSTNVrglCHRSEIA 1339
                  6788899999999999888887665667777665 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.3   0.00039      0.63     144     189 ..    1534    1579 ..    1520    1690 .. 0.91
   2 ?   -0.2   0.0      0.29   4.7e+02     109     174 ..    1732    1800 ..    1730    1807 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00039
      TPR_15  144 qsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallWl 189 
                  +s++ +l + +++++ g+td+A +++++Al+  +  +++ +  +W+
  KKY15609.1 1534 DSSLLWLQYMAFHLELGETDQARQIAQRALQTIAVGQDAEKLNIWV 1579
                  7999****************************99999999999996 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.29
      TPR_15  109 sprlLssalellerakdydriaellksle...eeeaaeqsaafllaraelyrqegqtdaAlrdyreAla 174 
                  +++l+   l+l  r ++ d++++l++++    ++ + +q   f+ +   ++ +eg++  A  +  +A++
  KKY15609.1 1732 RVDLWNVLLDLELRHGEKDQVRNLFERIFspsSKIKNKQAKHFFKRWLDFEMKEGDERSADAVKARAVE 1800
                  6788999999999**************6543245556688899999999****9999999888777776 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6  15.3    0.0094        15     329     421 ..    1367    1455 ..    1331    1507 .. 0.47

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0094
       Nop14  329 eeeeefglgkglkataeee.eeededdfeedddlveseseeee...eeeeedeeeeedeeeee.eeeededdlsdlese.eeeeedeleeelleeek 419 
                  + + +fgl+++         ++eded ++ ddd++ s++e+       +++d++++ede +++ +  ed+d +s +++e ++ e+d       +ee+
  KKY15609.1 1367 KRRVNFGLKASY------FtDVEDEDMEDLDDDESLSDEEAGGvdiIMNDSDSDSDEDELNNDlDV-EDDDAESVEQDElDDMEDDSS---VANEEE 1453
                  222334444444......223333333333333333333333333444444444444444444222.222222222222222222221...111112 PP

       Nop14  420 ka 421 
                   a
  KKY15609.1 1454 PA 1455
                  12 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1808 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.10u 0.31s 00:00:01.41 Elapsed: 00:00:00.50
# Mc/sec: 10957.51
//
Query:       KKY15610.1  [L=122]
Description: putative 60s ribosomal protein l22 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-47  160.2   0.4    2.2e-47  159.9   0.4    1.0  1  Ribosomal_L22e  Ribosomal L22e protein family
  ------ inclusion threshold ------
       0.14   12.4   0.1       0.32   11.2   0.1    1.7  1  AMPK1_CBM       Glycogen recognition site of AMP-activated pr


Domain annotation for each model (and alignments):
>> Ribosomal_L22e  Ribosomal L22e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.9   0.4   2.5e-51   2.2e-47       1     109 []      11     119 ..      11     119 .. 0.98

  Alignments for each domain:
  == domain 1  score: 159.9 bits;  conditional E-value: 2.5e-51
  Ribosomal_L22e   1 kkklkftidcskpvedkildvaefekfLkerikvngktgnlgdkveieregkskvtvtsevkfskrylkyltkkyLkkkqlrdwlrvvasskesY 95 
                     k++ k+tid+s+pv+dki+d+++fekfL+++ikv+g++gnlgd+++i++ g+ kv+v+++++fs+rylkyltkkyLkk+qlrdwlrvv+ sk  Y
      KKY15610.1  11 KVTSKYTIDASQPVNDKIFDISAFEKFLHDKIKVEGRVGNLGDTITISQAGEGKVEVVAHIPFSGRYLKYLTKKYLKKNQLRDWLRVVSVSKGVY 105
                     5789******************************************************************************************* PP

  Ribosomal_L22e  96 eLryfnieedeeee 109
                     +Lr++n+++d++ee
      KKY15610.1 106 QLRFYNVADDDAEE 119
                     **********9986 PP

>> AMPK1_CBM  Glycogen recognition site of AMP-activated protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   3.6e-05      0.32      16      52 ..      73     110 ..      54     121 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.6e-05
   AMPK1_CBM  16 vtGsfnnWkkkipLkkse.kdfsvilkLpeGthqykFi 52 
                  +G + ++ +k  Lkk++ +d+  ++++ +G++q++F+
  KKY15610.1  73 FSGRYLKYLTKKYLKKNQlRDWLRVVSVSKGVYQLRFY 110
                 5799999********8877******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.31s 00:00:00.75 Elapsed: 00:00:00.47
# Mc/sec: 773.12
//
Query:       KKY15611.1  [L=276]
Description: hypothetical protein UCRPC4_g06243 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-15   56.0   0.3    7.2e-15   55.1   0.3    1.5  1  GFA       Glutathione-dependent formaldehyde-activating enzym


Domain annotation for each model (and alignments):
>> GFA  Glutathione-dependent formaldehyde-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.3     4e-19   7.2e-15       2      80 ..     127     203 ..     126     216 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 4e-19
         GFA   2 lChCsdCrkasgsaftanavvkaealelleg..elkeykktadsgnkvtrsfCpeCgsplyseesaapevvivrvGtlddp 80 
                 +C+C++Crk++ + +++++++++++l+ +++  ++key+    s+++ +r fC++Cgs l++ +s++p+ ++++vGtld+ 
  KKY15611.1 127 NCQCTTCRKWTTALVSHAVLIQRSQLSDISKfpTYKEYQ----SSEDSSRVFCSKCGSGLIWISSRMPDRYVLMVGTLDED 203
                 7**************************888877777777....89****************99****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1777.32
//
Query:       KKY15612.1  [L=261]
Description: putative phosphoserine phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-19   70.3   0.0      4e-19   69.7   0.0    1.2  1  HAD              haloacid dehalogenase-like hydrolase
     0.0012   19.2   1.7       0.14   12.5   0.0    3.0  2  Hydrolase        haloacid dehalogenase-like hydrolase
     0.0031   17.0   0.0        0.5    9.7   0.0    2.1  2  Put_Phosphatase  Putative Phosphatase
     0.0033   17.5   0.0       0.34   11.0   0.0    2.2  2  HAD_2            Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.05   13.1   0.0       0.13   11.7   0.0    1.6  2  UMPH-1           Pyrimidine 5'-nucleotidase (UMPH-1)


Domain annotation for each model (and alignments):
>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   1.1e-22     4e-19       2     188 .]      16     200 ..      15     200 .. 0.81

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 1.1e-22
         HAD   2 lfDfDgTLldgdslelllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpklldpgalellaahraa 100
                 + DfDgT++++d++++++++++       + + r++  ++     ++ +r+g++++l++   ++++  ++ l++ +      k ldp++  +++++++a
  KKY15612.1  16 FTDFDGTITTKDTNDFMTDNHGF------GLEQRRQGNMDT--LNGEPFRDGFRKMLDSWTTSFPD-TIEILKKNI------K-LDPHFANFVSWAKSA 98 
                 89*****************6665......666666666666..34555567999999999999986.556666666......4.88************* PP

         HAD 101 GdrvvvvSgglrplvepll.aelg....adevlatelevdd...rltge....lglegkpvrgegkvaalrewlaaegegidlee...vvayGDspsDl 184
                 G++++v+S+g+ p++ +ll  +lg     +e++a+ +  +    +lt+     + +++++ +g++k   +r ++ +e ++++++e   + + GD++sDl
  KKY15612.1  99 GVPIIVLSSGMVPIISALLeHLLGpdfkDIEIIANGVQPKPpinDLTKPlgweIVYHDDSGFGHDKSLTIRPYA-KEIAKLPEAErptTLYAGDGVSDL 196
                 *******************66889**888899***99988899977777777799************9999944.44444444444758888******* PP

         HAD 185 pllr 188
                  +++
  KKY15612.1 197 SAAK 200
                 *996 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   2.0      0.12   4.4e+02       4      16 ..      15      27 ..      12      39 .. 0.79
   2 !   12.5   0.0   3.8e-05      0.14     114     208 ..      79     201 ..      72     203 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.12
                EEEESBTTTBCHH CS
                xxxxxxxxxxxxx RF
   Hydrolase  4 vvfDkdGTLttge 16
                ++ D+dGT+tt  
  KKY15612.1 15 FFTDFDGTITTKD 27
                567*******865 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.8e-05
                 HHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHH.TTGGGE.SEEEEHHCESSTTT....................SHHHHHHHHHHHT... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx.xxxxxxxxxxxxxx....................xxxxxxxxxxxxx... RF
   Hydrolase 114 adplkvkpeaaeavasLkaagievvlltgdnpetaeraanq.lGddyf.daviasdietvakp....................spegkvaaireLq... 187
                 + ++k+ p  a +v + k+ag+++++l+++      +++++ lG   f d++i +  +   kp                       +k  +ir +    
  KKY15612.1  79 KKNIKLDPHFANFVSWAKSAGVPIIVLSSGMVPIISALLEHlLG-PDFkDIEIIANGVQ-PKPpindltkplgweivyhddsgFGHDKSLTIRPYAkei 175
                 56678999********************9999999999999899.44424443333333.333344444447777888777774444444444443333 PP

                 .....STGGGEEEEESSHHHHHHHHH CS
                 .....xxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 188 .....gkpeevamVGDgvnDaaalaa 208
                      ++   ++  GDgv D++a+++
  KKY15612.1 176 aklpeAERPTTLYAGDGVSDLSAAKE 201
                 33445555578888888888888886 PP

>> Put_Phosphatase  Putative Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00014       0.5       4     110 ..      16     120 ..      13     137 .. 0.73
   2 !    5.3   0.0    0.0032        11     170     212 ..     184     223 ..     158     240 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00014
  Put_Phosphatase   4 vfDFDktiidedsdnwvvdelpa..telfeelretlrkglwnelmdrvlkelheqgvseadikkvlrsiplspglvelikslakkkleldliii 95 
                        DFD ti  +d+++ ++d  ++  +++ +   +tl+ + + +   ++l    ++    + i+   ++i l+p++ + +  +  k+ ++ +i++
       KKY15612.1  16 FTDFDGTITTKDTNDFMTDNHGFglEQRRQGNMDTLNGEPFRDGFRKMLDSWTTSF--PDTIEILKKNIKLDPHFANFVSWA--KSAGVPIIVL 105
                      45***************998765116666666677776666666666666555543..445556668999*****9999988..5779999999 PP

  Put_Phosphatase  96 SDaNsffieeileaa 110
                      S   +  i  +le++
       KKY15612.1 106 SSGMVPIISALLEHL 120
                      988777788877775 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0032
  Put_Phosphatase 170 erliYvGDganDlCpvlklrekDvampRkgfpleklisenksl 212
                         +Y GDg  Dl +    +e+D+ +++kg++l +  +++   
       KKY15612.1 184 PTTLYAGDGVSDLSAA---KETDLLFAKKGHDLITYCEREGIP 223
                      4579********9875...689********9998877766554 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   9.4e-05      0.34       4     136 ..      18     139 ..      13     148 .. 0.78
   2 ?    4.4   0.0      0.01        36     143     172 ..     173     203 ..     167     208 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.4e-05
       HAD_2   4 DlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeeekieellrkyneekkkkevkpydgvkelLeeLkeagyklgivT 102
                 D+DgT+  + +  + + n+ +   gl++  + ++++l g + r+ +rk+ +s      +++ + +  e +kk ++k+ ++  +++ + k+ag+ + + +
  KKY15612.1  18 DFDGTITTKDTNDFMTDNHGF---GLEQRRQGNMDTLNGEPFRDGFRKMLDS------WTTSFPDTIEILKK-NIKLDPHFANFVSWAKSAGVPIIVLS 106
                 ******855554444555655...788999*********************5......56666888899999.9************************* PP

       HAD_2 103 sksreaveekleqlgiesyFdvivtsedvekkKP 136
                 s++   +   le+l   ++ + i +  +  ++KP
  KKY15612.1 107 SGMVPIISALLEHLLGPDF-KDIEIIANGVQPKP 139
                 ***9999999999875554.44444444444445 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.01
       HAD_2 143 kalekl.klkkeeviyvGDsptDieaakkag 172
                 k + kl ++++  ++y GD  +D+ aak++ 
  KKY15612.1 173 KEIAKLpEAERPTTLYAGDGVSDLSAAKETD 203
                 4444444788899***************976 PP

>> UMPH-1  Pyrimidine 5'-nucleotidase (UMPH-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.6e-05      0.13      87     141 ..      80     135 ..      73     140 .. 0.88
   2 ?   -2.8   0.0      0.98   3.5e+03      84     112 ..     199     227 ..     183     229 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.6e-05
      UMPH-1  87 skialrdgveelfekleklnvPvlifsaGlgdvleevlrqa.nvvysnvkvvsnfl 141
                  +i+l   + ++++  ++  vP+++ s+G+  +++ +l +  +  ++++++++n +
  KKY15612.1  80 KNIKLDPHFANFVSWAKSAGVPIIVLSSGMVPIISALLEHLlGPDFKDIEIIANGV 135
                 5667777888899999999*********************9999********9976 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.98
      UMPH-1  84 vkeskialrdgveelfekleklnvPvlif 112
                 +ke++  +  + ++l++  e++ +P+ +f
  KKY15612.1 199 AKETDLLFAKKGHDLITYCEREGIPFTVF 227
                 56666677777888888889999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 1690.16
//
Query:       KKY15613.1  [L=333]
Description: putative mitochondrion biogenesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-85  283.9   8.1    9.1e-85  283.5   8.1    1.2  1  She9_MDM33     She9 / Mdm33 family
     0.0015   18.7   5.2     0.0032   17.6   5.2    1.6  1  Uds1           Up-regulated During Septation
  ------ inclusion threshold ------
      0.025   14.7   1.5      0.025   14.7   1.5    2.4  2  Tropomyosin_1  Tropomyosin like
       0.16   11.9  15.4       0.57   10.1  12.7    2.3  2  YscO           Type III secretion protein YscO
       0.32   10.8   5.4      0.094   12.6   1.2    1.9  2  SKA1           Spindle and kinetochore-associated protein 1
       0.55   10.6   0.1       0.55   10.6   0.1    2.5  3  Uso1_p115_C    Uso1 / p115 like vesicle tethering protein, C 


Domain annotation for each model (and alignments):
>> She9_MDM33  She9 / Mdm33 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.5   8.1   3.1e-88   9.1e-85       9     196 ..       1     188 [.       1     190 [. 0.99

  Alignments for each domain:
  == domain 1  score: 283.5 bits;  conditional E-value: 3.1e-88
  She9_MDM33   9 ldslqetlltaskalndvtGYseieklkksieeleeeleeakeevreakeayeeaiekrsksqrevneLLqRkssWspedlerftelyrkdhanekeee 107
                 +d+lq+++++as+++nd+tGYs ie+lk++ie le+++++++++vrea+++y+eai+ rs+sqrevn+LLqRk++Wsp+dlerft+lyr+dh ne++e+
  KKY15613.1   1 MDNLQSNIFVASQHINDLTGYSGIEALKREIEILETQVQNTRRAVREARDRYTEAITIRSSSQREVNDLLQRKHAWSPADLERFTSLYRSDHVNEQAEA 99 
                 79************************************************************************************************* PP

  She9_MDM33 108 eakeklkeaeakeeelseeLtksiLtRYHEEqiWSDkiRraStwgtlvlmgvNvllfvvlqllvEPwkRrrLvesfeekvkealeevke 196
                 +a+e+l++ae+++ee++++L+++iL+RYHEEqiWSDkiRr+Stwgt++lmg+Nv+lf+++q++vEPw+R+rLv++feekv eale++++
  KKY15613.1 100 KAQENLSRAEREAEEAASKLARTILARYHEEQIWSDKIRRMSTWGTWGLMGLNVFLFLIFQVAVEPWRRQRLVRGFEEKVLEALEKENS 188
                 ************************************************************************************99875 PP

>> Uds1  Up-regulated During Septation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   5.2   1.1e-06    0.0032      20     107 ..      21     121 ..       1     129 [. 0.81

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.1e-06
        Uds1  20 leeVeelkkelkaLeerlealrkkLaletklrdaarsLsrlyssskksak....................ssaarsnskssreslakaeeelaeserkv 98 
                 +  +e+lk+e++ Le++++++r+       +r+a+ +  ++ +  ++s++                    +s   ++ + +++++aka+e+l+ +er  
  KKY15613.1  21 YSGIEALKREIEILETQVQNTRRA------VREARDRYTEAITIRSSSQRevndllqrkhawspadlerfTSL-YRSDHVNEQAEAKAQENLSRAEREA 112
                 6779********************......999999999988555555448999*************986333.4566667789*************** PP

        Uds1  99 delaselek 107
                 +e+as+l +
  KKY15613.1 113 EEAASKLAR 121
                 *****9976 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   1.5   8.3e-06     0.025      73     128 ..      22      77 ..       2      92 .. 0.89
   2 ?    0.3   2.9      0.23     7e+02      53      98 ..     100     121 ..      80     142 .. 0.50

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.3e-06
  Tropomyosin_1  73 tnnealtrkiqlLEeeleesdkkLkettekLretdvkaeelERkvkaLeqerdewe 128
                    +  eal+r i++LE ++ ++ + ++e+ ++ +e+      + R+v++L q++++w 
     KKY15613.1  22 SGIEALKREIEILETQVQNTRRAVREARDRYTEAITIRSSSQREVNDLLQRKHAWS 77 
                    5679******************************99999**************995 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.23
  Tropomyosin_1  53 kleeklkeakekaeesekkktnnealtrkiqlLEeeleesdkkLke 98 
                    k++e+l+                          E e+ee+ +kL+ 
     KKY15613.1 100 KAQENLSR------------------------AEREAEEAASKLAR 121
                    22222222........................34444444444433 PP

>> YscO  Type III secretion protein YscO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  12.7   0.00019      0.57      59     147 ..      15     116 ..       3     118 .. 0.77
   2 ?    0.7   6.8      0.15   4.6e+02      16      52 ..      95     131 ..      88     140 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00019
                 HTTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH........HHHHHHHHHHHHHHHHHHHHHHH.....HHHGG CS
        YscO  59 igklvllkelekvkqqvalLrekeaelekqveeakqqleaerealrqarkelqearra........veKfaelarlvraeasrqqerkE.....eqelE 144
                 i+ l   + +e++k+++ +L+ ++++   +v ea+++++++++   + ++e+    +         +e+f  l r     ++++++++E     e+e+E
  KKY15613.1  15 INDLTGYSGIEALKREIEILETQVQNTRRAVREARDRYTEAITIRSSSQREVNDLLQRkhawspadLERFTSLYRSDHVNEQAEAKAQEnlsraEREAE 113
                 556667789********************************9988888887776554312233333699*99999988888888888884444466777 PP

                 GT- CS
        YscO 145 Efa 147
                 E+a
  KKY15613.1 114 EAA 116
                 776 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO  16 ekalkrqeqalaeareaheqaresladyrawraqeea 52 
                 e+a   +++ l++a++++e+a+++la+    r  ee+
  KKY15613.1  95 EQAEAKAQENLSRAEREAEEAASKLARTILARYHEEQ 131
                 4555556888999999999999999988887777776 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.2   3.1e-05     0.094      23     117 ..      22     117 ..       3     135 .. 0.78
   2 ?   -0.2   0.2      0.24   7.1e+02      69     114 ..     178     224 ..     167     265 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.1e-05
                 .XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SKA1  23 edlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqek..lqhlkenlpshlpkktaassaeeskssspeeeeeteskkekeeeaeka 117
                 + +++++ e++ le ++++ +++++e ++   ++   i  s +++ +  lq   +  p+ l++ t+  ++++++++ + +++e+ s +e+e+e++++
  KKY15613.1  22 SGIEALKREIEILETQVQNTRRAVREARDRYTEAI-TIRSSSQREVNdlLQRKHAWSPADLERFTSLYRSDHVNEQAEAKAQENLSRAEREAEEAAS 117
                 568999************************99999.777776666555888889999*********9999999988888777555554444333333 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.24
                 ..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SKA1  69 k.lqhlkenlpshlpkktaassaeeskssspeeeeeteskkekeeea 114
                 k l+ l+++   h  ++  as+++ ++s+ +e+++et+  +e+++ a
  KKY15613.1 178 KvLEALEKENSVHTTDSSIASTMVATESAPTESQDETRILSEPATSA 224
                 33555555555555556666666666666555555555554422222 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00018      0.55      49      86 ..      26      70 ..      11      71 .. 0.87
   2 ?    2.6   0.9     0.057   1.7e+02      17      43 ..      94     120 ..      79     140 .. 0.48
   3 ?   -3.4   0.2       4.1   1.2e+04      44      44 ..     190     190 ..     176     215 .. 0.41

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00018
  Uso1_p115_C 49 eleaenkklekeleklraelkeekekekek.......qkEldDLL 86
                  l+ e++ le +++++r +++e++ ++ e+       q E++DLL
   KKY15613.1 26 ALKREIEILETQVQNTRRAVREARDRYTEAitirsssQREVNDLL 70
                 5678888999999999999999999999889999999*******9 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.057
  Uso1_p115_C  17 neklkaelqslskalesleqkeakkaa 43 
                  ne+++a++q+  +++e ++++ a k a
   KKY15613.1  94 NEQAEAKAQENLSRAEREAEEAASKLA 120
                  333333333322222222222122222 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.1
  Uso1_p115_C  44 e 44 
                  +
   KKY15613.1 190 H 190
                  1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1777  (0.0991132); expected 358.6 (0.02)
Passed bias filter:                      905  (0.0504769); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.48
# Mc/sec: 2065.45
//
Query:       KKY15614.1  [L=275]
Description: putative ctlh domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-36  123.2   0.1    9.4e-36  122.9   0.1    1.1  1  CLTH      CTLH/CRA C-terminal to LisH motif domain
    5.1e-06   26.2   0.0      9e-06   25.5   0.0    1.4  1  LisH      LisH


Domain annotation for each model (and alignments):
>> CLTH  CTLH/CRA C-terminal to LisH motif domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   0.1     1e-39   9.4e-36       1     145 [.      64     217 ..      64     220 .. 0.92

  Alignments for each domain:
  == domain 1  score: 122.9 bits;  conditional E-value: 1e-39
        CLTH   1 sikerqkIiklilegdlseaiewinenkpellesnsnLeFkLkllqfielirg..........ktkdieealeyarenlefend...ehlkelekamsL 86 
                 si+er +I+++i++gdl+ aie+ine++p+ll+ + +L+F L++lq+ielir             +++++al +a+++l++++    ++l++le++m+L
  KKY15614.1  64 SINERVEIRDSIHRGDLQTAIEKINELNPQLLDTDTSLHFSLLRLQLIELIRActepassnpsA-DSLNAALDFATTHLAPRAPtnpKFLTDLERTMAL 161
                 699*************************************************977776665533.89************86666677************ PP

        CLTH  87 LafsdpeskelssplknlldpsrrekvakefnsailkllglskespLeillsaglsalk 145
                 L+f++ +   l  +l++l+dps+r++va+ +n+ail+++g  +e++L  l+++ +++  
  KKY15614.1 162 LIFPPEN---LAPQLAELIDPSLRKEVANRVNEAILHSQGARREAKLRHLIRLRTWSER 217
                 ***9954...577*****************************************99975 PP

>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0     1e-09     9e-06       2      27 .]      29      54 ..      28      54 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1e-09
                HHHHHHHHHHHHCT-HHHHHHHHHHT CS
        LisH  2 eLNrLIydYLvkeGyeetAeaFekEa 27
                ++N +++dYL+ eGy  +A+ ++ Ea
  KKY15614.1 29 DINGIVMDYLITEGYPLAAKCLAAEA 54
                8*******************999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 2179.95
//
Query:       KKY15615.1  [L=458]
Description: putative uridine kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-55  185.9   0.0      1e-54  185.3   0.0    1.3  1  PRK             Phosphoribulokinase / Uridine kinase family
    6.7e-43  146.5   0.0      1e-42  146.0   0.0    1.2  1  UPRTase         Uracil phosphoribosyltransferase
    0.00045   20.1   0.0    0.00099   19.0   0.0    1.6  1  CPT             Chloramphenicol phosphotransferase-like prote
     0.0013   18.0   0.0     0.0028   17.0   0.0    1.5  1  Zeta_toxin      Zeta toxin
     0.0023   18.5   0.0     0.0045   17.5   0.0    1.5  1  AAA_18          AAA domain
     0.0053   16.9   0.0      0.013   15.7   0.0    1.7  1  AAA_33          AAA domain
  ------ inclusion threshold ------
      0.036   14.1   0.0      0.082   12.9   0.0    1.6  1  TsaE            Threonylcarbamoyl adenosine biosynthesis prot
      0.081   12.1   0.0       0.15   11.2   0.0    1.3  1  NB-ARC          NB-ARC domain
      0.088   12.0   0.1       0.17   11.0   0.1    1.4  1  TIP49           TIP49 P-loop domain
       0.14   12.5   0.0        0.3   11.5   0.0    1.5  1  AAA_16          AAA ATPase domain
       0.18   11.5   0.1        5.7    6.6   0.0    2.2  2  Cytidylate_kin  Cytidylate kinase
       0.19   12.1   0.1        5.2    7.5   0.0    2.4  2  AAA_17          AAA domain


Domain annotation for each model (and alignments):
>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.3   0.0   6.8e-58     1e-54       1     197 []      31     219 ..      31     219 .. 0.98

  Alignments for each domain:
  == domain 1  score: 185.3 bits;  conditional E-value: 6.8e-58
         PRK   1 vIgvagsSGaGkttvarklekifgrekvkaaeiegdsflrldraekdleleerkrakekevsflspeandfdllyevlkelkegkkvdkpiYsheteea 99 
                 +Ig+agsSG+Gkt++a ++ k++    ++     ++ +l++d+++k l++e+++ a++ +++f+spe +dfdll e+l+elk+g+ +++p+Ys+ ++++
  KKY15615.1  31 IIGIAGSSGSGKTSLAIEILKSLS---LP-----WVIILSIDSFYKPLTPEQHALAHQDTYDFDSPESIDFDLLVEKLLELKKGQLTEIPVYSFAEHQR 121
                 8******************99999...77.....888************************************************************** PP

         PRK 100 apdkeeliegadvlviEGlhalydervaelldlkiyvdisidlelarklqRDiaeRGrsleavldsil.rrkpdyvnyikpqfseadliiqrvptvdvs 197
                    ++  i+ ++++++EG++al d rv + ld+ki+v ++ d++l+r+++RD+ eRGr++e+v+++++  +kp + +y++pq + ad+ii+r+ +++++
  KKY15615.1 122 MS-ETVSIYAPHIVILEGILALNDPRVLDTLDMKIFVEADADVCLSRRIVRDVRERGRTIEGVIKQWFaYVKPVFWRYVEPQRHTADVIIPRGMENKIA 219
                 **.999**************************************************************99***********************999985 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.0   0.0   6.8e-46     1e-42       3     186 ..     263     445 ..     260     454 .. 0.96

  Alignments for each domain:
  == domain 1  score: 146.0 bits;  conditional E-value: 6.8e-46
     UPRTase   3 shpllkakltilRdastsrkdfrelvdriarllaeealsallpveevtvttplgkeysgelldeekialVpilRaGegmeealrellpearvghlglqr 101
                 ++p+++++ tilR+ +  + df+++ dr++ ll+e+al + ++v +v+vttp++++y+g      k+ +V ilR+G ++e +l++ +p++++g +++q 
  KKY15615.1 263 NTPQVQSIATILRSPNAGQVDFVFYFDRLTSLLIEKALDH-VQVDPVKVTTPQKTTYNGLKPVG-KVSAVVILRGGSCLETGLKRTIPDCMTGRMLIQS 359
                 79**************************************.******************87776.9********************************* PP

     UPRTase 102 eeetlepveyynkLPkki.aertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvlaseegvkrlaeefpkvkvvtaavDee 186
                 +  t ep+++y kL  +i +++tvlllDp +++Gg+a +a+++L ++gv+eekI++++ la + gvkrl++ fp+++v++a++ + 
  KKY15615.1 360 NFRTGEPELHYFKLFPDIkDHSTVLLLDPQMSSGGAALMAVRTLVDHGVDEEKIVFVTCLAGNMGVKRLMSVFPGITVIAANIADD 445
                 ******************88999**********************************************************99665 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   6.6e-07   0.00099       3      59 ..      31      88 ..      29     110 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 6.6e-07
                EEEEEE-TTSSHHHHHHHHHHHSSS-EEE.EEHHHHHHHS-GGGGTSTTSEEEETTSE CS
         CPT  3 iilLnGgsssGKsslaralqevldepwlh.lgvDafvealppkrqdeadglefetele 59
                ii + G+s sGK+sla  + + l  pw+  l +D+f + l p++ + a++  ++ + +
  KKY15615.1 31 IIGIAGSSGSGKTSLAIEILKSLSLPWVIiLSIDSFYKPLTPEQHALAHQDTYDFDSP 88
                77789**********************75279**********9988555444444444 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.9e-06    0.0028      17      89 ..      30     102 ..      14     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.9e-06
  Zeta_toxin  17 klillgGqpGAGKselaellkdelerqgnvvrldpDd.lRelhPeyeeilkadpkkaseltqkdaselvekllq 89 
                  +i ++G++G+GK++la ++ ++l +   v+ l+ D+ +++l Pe  ++  +d +++ +  + d   lvekll+
  KKY15615.1  30 SIIGIAGSSGSGKTSLAIEILKSL-SLPWVIILSIDSfYKPLTPEQHALAHQDTYDFDSPESIDFDLLVEKLLE 102
                 56779*******************.588899999998469***************9999999999999999986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     3e-06    0.0045       1     118 [.      32     176 ..      32     186 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3e-06
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf........gvnlrdvakenglllevdpealdeskrldedkldklldaleenss.....................a 70 
                 I+++G +G+GKt+la e+ k+l +           ++ + +e + l  +d +++d+ + +d d l + l +l+   +                     +
  KKY15615.1  32 IGIAGSSGSGKTSLAIEILKSLSLpwviilsiDSFYKPLTPEQHALAHQDTYDFDSPESIDFDLLVEKLLELK---KgqlteipvysfaehqrmsetvS 127
                 89****************9999779888777777777777777777777777666666666666444444444...445699999*****999999986 PP

      AAA_18  71 leegknlvidghla..eleseaakdikkvvLtaspeelleRlekRgyeea 118
                    ++ ++++g+la  +++  +  d+k ++++a+ +++l R   R+ +e+
  KKY15615.1 128 IYAPHIVILEGILAlnDPRVLDTLDMK-IFVEADADVCLSRRIVRDVRER 176
                 667888899**9872244555666677.***********99888876665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.4e-06     0.013       4     114 ..      34     167 ..      31     193 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.4e-06
      AAA_33   4 lvGlpGsGKstlaerllkklg...avllssdtlrrrlfgtdqq...sktdytrvldrlyqilnelarkalsagrnvildat...nlsrrerarflklar 93 
                 + G +GsGK+ la ++lk l    +++ls d++++ l++++     ++t+  +  +++   l  l++k l+ +++ ++  +   +++++++++ +++  
  KKY15615.1  34 IAGSSGSGKTSLAIEILKSLSlpwVIILSIDSFYKPLTPEQHAlahQDTYDFDSPESIDFDL--LVEKLLELKKGQLTEIPvysFAEHQRMSETVSIYA 130
                 57*********************9999********999954432224445444444444333..56666666666666544322444555555555544 PP

      AAA_33  94 rlgvp................vrivvvetdeetlkeR 114
                  + v                 +  ++ve+d +++ +R
  KKY15615.1 131 PHIVIlegilalndprvldtlDMKIFVEADADVCLSR 167
                 3333345555555555555554555555555555555 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.5e-05     0.082      20      90 ..      30     102 ..      12     132 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.5e-05
                 EEEEEEESTTSSHHHHHHHHHHHTT--..----TTTTSEEEEEE..SSEEEEE-TT-SSTHHH.HHCTTCCCCS CS
        TsaE  20 dvilLeGdLGaGKTtlvrglakalgve..evkSPTFtlveeYelekeglyHfDlYRledeeel.eelgleeyle 90 
                 ++i + G  G+GKT l+ +++k+l +    + S   +  ++ + e+++l H D Y ++++e++  +l +e++le
  KKY15615.1  30 SIIGIAGSSGSGKTSLAIEILKSLSLPwvIILS-IDSFYKPLTPEQHALAHQDTYDFDSPESIdFDLLVEKLLE 102
                 468899******************998753444.23345566555566*********99998733555565555 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0001      0.15      20      44 ..      29      53 ..      25      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
                SEEEEEEESTTSSHHHHHHHHCCSH CS
      NB-ARC 20 slvvalvGmgGvGKttlakqilnks 44
                + ++++ G  G+GKt la +il+++
  KKY15615.1 29 MSIIGIAGSSGSGKTSLAIEILKSL 53
                459******************9985 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00011      0.17      53      83 ..      32      60 ..      28      70 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 53 vLlaGpsgtGktalaiaiskelgedvpfval 83
                + +aG sg+Gkt+lai i k+l+  +p+v++
  KKY15615.1 32 IGIAGSSGSGKTSLAIEILKSLS--LPWVII 60
                569******************98..676665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0002       0.3      25      51 ..      30      56 ..      20     105 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
      AAA_16 25 elvllsGesGvGKsslvrellralekd 51
                +++ + G sG+GK+sl+ e+l++l+  
  KKY15615.1 30 SIIGIAGSSGSGKTSLAIEILKSLSLP 56
                567799***************999866 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0038       5.7       1      93 [.      32     130 ..      32     142 .. 0.66
   2 ?    2.8   0.1     0.056        84     126     154 ..     147     176 ..     143     228 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0038
                     EEEE-STTSSHHHHHHHHHHHHT-E...EEEHHHHHHHHH...HHHHHTT--TT-HHHHHHHHHT--EEEEEEEEEETTEE-TTGGGSHHHHHHH CS
  Cytidylate_kin   1 iaiDGPagsGKssvaralaeklglk...yldtgalYRala...laalrrkvdlldeaalvelakevelsfeaekvllngedveeelrsdevekav 89 
                     i i G +gsGK s+a ++ + l+l    +l+  ++Y+ l+    a  ++++  +d  + +++   ve  +e +k  l +  v +  + + ++++v
      KKY15615.1  32 IGIAGSSGSGKTSLAIEILKSLSLPwviILSIDSFYKPLTpeqHALAHQDTYDFDSPESIDFDLLVEKLLELKKGQLTEIPVYSFAEHQRMSETV 126
                     6799****************999762225778888888773333444455555566666666555555555556666666666666666666666 PP

                     HHHT CS
  Cytidylate_kin  90 Sava 93 
                     S +a
      KKY15615.1 127 SIYA 130
                     6655 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.056
                     ISTT-SEEEEEE--HHHHHHHHHH.HHHHT CS
  Cytidylate_kin 126 vfpdaelKifldAsveeRakRRlk.qlkak 154
                     v+   ++Kif++A +++  +RR+  +++++
      KKY15615.1 147 VLDTLDMKIFVEADADVCLSRRIVrDVRER 176
                     677789**************9975144444 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.18   2.7e+02       2      22 ..      36      56 ..      35      60 .. 0.86
   2 ?    7.5   0.0    0.0035       5.2      98     129 ..     149     180 ..     102     184 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.18
                E-TTSSHHHHHHHHHHHHTEE CS
      AAA_17  2 GgPGsGKgtqceklvekygft 22
                G  GsGK+ ++ ++ + + ++
  KKY15615.1 36 GSSGSGKTSLAIEILKSLSLP 56
                889********9999998876 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0035
                 HHH..SEEEEEE--HHHHHHHHHHH..TTST-TS CS
      AAA_17  98 eelkpdaiilleadpeeilerrlkd..rtrgrdd 129
                 ++l  d+ i++ead++++l+rr+ +  r+rgr+ 
  KKY15615.1 149 DTL--DMKIFVEADADVCLSRRIVRdvRERGRTI 180
                 444..8899*************988678899876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.52
# Mc/sec: 2657.72
//
Query:       KKY15616.1  [L=235]
Description: putative recombination hotspot-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-37  127.0   4.3    1.1e-26   94.2   0.4    2.9  2  Translin  Translin family
  ------ inclusion threshold ------
      0.055   13.6   3.0       0.12   12.5   3.0    1.6  1  HR1       Hr1 repeat


Domain annotation for each model (and alignments):
>> Translin  Translin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.3   1.3e-11   1.2e-07       2      83 ..      32     111 ..      31     116 .. 0.76
   2 !   94.2   0.4   1.2e-30   1.1e-26     113     205 .]     120     231 ..     111     231 .. 0.95

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 1.3e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHTTGSST.TT...HHHHHHH.H.HHHHHHHHHHTTSS..........GHHHHGGGTH.HHHHHH CS
    Translin   2 rreriikasrditaaskkiifllhrvrsek.te...aqdkkakik.keakeklkeiakllasvaeelqgsnayrYqrqisgglqeli 83 
                  r+++ ++++ ++++ + ++ +l++++s++ ++   ++ ++a+ + + ++e+++++++ +       +++++y+Y+ ++s+ +qeli
  KKY15616.1  32 IRDELKEIVQTLEKQDRFTQSILSKAHSTPsNRlndDVVNPASASiSAQNETIRQLSEAA-------SQHPFYKYNGMWSRTMQELI 111
                 69*************************999555544333444433444455555555555.......778***************99 PP

  == domain 2  score: 94.2 bits;  conditional E-value: 1.2e-30
                 S..SSSSS---HHHHHHHHHHHHHHHHHHHHHHHCTT--S.HHHHHHHHHHHHHHHHHTS----HH...HHHHHTTHHHH................... CS
    Translin 113 n..eedafhltpedYllGlfdLtgELmRfainsvalgdkeekplqilkflrelragfellnlkndsakdlrkKldvlkqs................... 190
                 n  ++dafh+t+e+Yll+l++L +EL R+a+nsv+lgd++ +pl i+kf+++++agf+llnlknd+   lr++ d++k++                   
  KKY15616.1 120 NlkDRDAFHVTIEEYLLALTNLLDELARLAVNSVTLGDFS-RPLAISKFIKDIHAGFQLLNLKNDA---LRRRSDSIKYNvsreytigsailghelltp 214
                 33489**********************************9.***********************98...****************************** PP

                 ..HHHHHHHHHHHHHHT CS
    Translin 191 ..vkKvEdvvYdlsvRg 205
                   vkKvEdvvYdls+Rg
  KKY15616.1 215 lkVKKVEDVVYDLSLRG 231
                 ****************8 PP

>> HR1  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   3.0   1.4e-05      0.12       3      42 ..      20      59 ..      19      93 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
         HR1  3 eelekklekElkireGAenllraleskktqnkkvrqeaes 42
                e l+ k+++E kir+  + ++++le++    + ++++a+s
  KKY15616.1 20 ERLQAKIDEESKIRDELKEIVQTLEKQDRFTQSILSKAHS 59
                689**********************543333346666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1017  (0.0567237); expected 358.6 (0.02)
Passed bias filter:                      711  (0.0396564); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 1472.71
//
Query:       KKY15617.1  [L=157]
Description: putative rna exonuclease 4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-27   96.4   0.0      2e-27   96.1   0.0    1.1  1  RNase_H2_suC  Ribonuclease H2 non-catalytic subunit (Ylr154p-
  ------ inclusion threshold ------
      0.072   13.7   0.1      0.093   13.4   0.1    1.1  1  Pinin_SDK_N   pinin/SDK conserved region


Domain annotation for each model (and alignments):
>> RNase_H2_suC  Ribonuclease H2 non-catalytic subunit (Ylr154p-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.1   0.0   2.2e-31     2e-27       1     141 []      15     149 ..      15     149 .. 0.83

  Alignments for each domain:
  == domain 1  score: 96.1 bits;  conditional E-value: 2.2e-31
                   -EEEESSEESSEEE--.HHHHTCC........C-EE-SSS.EEEEETTEEEEEEEEE--TTEEEEEEECCTTS-EEE......SEEEEEEESS---S CS
  RNase_H2_suC   1 alnlLPfsiktdgpan.tahyfqprksakpahkegadqqellraaFRGRqlvGqelsvppayrgiilsttnppnkgg......ldsddeqeeeddee 90 
                   +ln+LP++i+++gp++ ++++++p        ke++d++    a+FRGR+l+G++l++p++y+g+ +++      +       +  dde+e++++++
    KKY15617.1  15 TLNILPCRINQTGPTKvSKRFWSP--------KEENDGTH--AAYFRGRKLRGRKLNIPEGYEGVAAKQLDASAPSAsapvhvRSFDDEAEADEEDD 101
                   68**********************........66666665..9***********************9998877766688987544444444444444 PP

                   -SGGGTT--EE.EEEEEEESEEEEECECS--.-TTSHHHHHTTHHHHHHHH CS
  RNase_H2_suC  91 gegeetavtksileptaefesftlWkhDeapeggDefvrgvgewlglveal 141
                   +e+ e     ++l+  a+fe++++W+h+ +p+ +D++v+g++ew+ ++e++
    KKY15617.1 102 EEKPE---PVKMLDIVATFENVVVWGHEVLPAPDDAYVKGIEEWIAFAETI 149
                   33333...3567***********************************9976 PP

>> Pinin_SDK_N  pinin/SDK conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1     1e-05     0.093      57     112 ..      50     106 ..      26     120 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1e-05
  Pinin_SDK_N  57 grgaglerreld.dsGgdgPpakrrdlggavsrlggerrarresrredsededdlpk 112
                   rg +l+ r+l+  +G +g +ak+ d   +  +   + r++ +++++d+ed++++p+
   KKY15617.1  50 FRGRKLRGRKLNiPEGYEGVAAKQLDASAPSASAPVHVRSFDDEAEADEEDDEEKPE 106
                  47888888888777899**********999999999999999999999999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.49
# Mc/sec: 973.05
//
Query:       KKY15618.1  [L=312]
Description: putative cyclopropane-fatty-acyl-phospholipid synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-73  246.3   0.0    6.4e-73  245.4   0.0    1.4  1  CMAS             Mycolic acid cyclopropane synthetase
    1.9e-11   44.5   0.0    3.5e-11   43.6   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    1.4e-09   38.5   0.0    2.6e-09   37.6   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    1.4e-09   37.9   0.0    2.2e-09   37.3   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
      1e-08   35.2   0.0    1.5e-08   34.6   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    5.2e-05   23.9   0.0     0.0001   23.0   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    0.00012   21.9   0.0    0.00019   21.3   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
  ------ inclusion threshold ------
      0.037   13.8   0.0       0.31   10.8   0.0    2.1  1  DUF938           Protein of unknown function (DUF938)
      0.046   13.4   0.0       0.07   12.8   0.0    1.3  1  TPMT             Thiopurine S-methyltransferase (TPMT)
      0.052   12.7   0.0      0.086   12.0   0.0    1.4  1  Methyltransf_3   O-methyltransferase
       0.15   12.2   0.0       0.27   11.4   0.0    1.4  1  HCV_capsid       Hepatitis C virus capsid protein


Domain annotation for each model (and alignments):
>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.4   0.0   3.9e-76   6.4e-73       6     267 ..       4     290 ..       1     295 [. 0.87

  Alignments for each domain:
  == domain 1  score: 245.4 bits;  conditional E-value: 3.9e-76
                 XHHHHHHHHTS-HHHHCTTS-TT---S----SS......TT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHH CS
        CMAS   6 evenikahYDlsndffalfldptmtYsCAyfer......ddmtLeeAqlaKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqa 98 
                 +  ni+ahYD+sn++fa+fl p+mtYsC ++++        ++Le+Aq++Kld+ ++ +++k G+++L+iG+GWGs ++rav r + +v +lTlS+eq+
  KKY15618.1   4 ALLNISAHYDISNEMFAAFLSPDMTYSCPIWSSkedtksRGESLEQAQYRKLDRFIDNAKIKRGDHVLEIGTGWGSFAIRAVGRTGCRVTSLTLSREQK 102
                 56799**************************985544444467******************************************************** PP

                 HHHHHHHHTS-SSS-EEEEES-GGG---....--SEEEEES-GGGTSGGGHHHHHHHHHHHS-T.T-EEEEEEEEE--HHHHHCTTCCCHHHHHHTSTT CS
        CMAS  99 klakkrvdeldlerkvevklldyedlde....kvdrvvsvgafehvgkenydtffkklkkllke.dGllllhtitslhkkelaerglklkfidkeiFPg 192
                 +la+kr++e++++++ ev+l+dy+ l+     ++d++vs++++e+vg e ++t+f+ ++kllk+ +G+ + ++it+++++  a  + +  fi+k+iFPg
  KKY15618.1 103 ELAEKRIAEAGFTENIEVLLCDYRALPMpregPYDKIVSIEMLEAVGREFLATYFECVDKLLKPqGGIAVFQCITMPETRYEAYSKGE-DFIRKYIFPG 200
                 **************************8766789****************************9862678889*******9999977777.9********* PP

                 S---BHHHHHH...HHHHTT-EEEEEEE-HHHHHHHHHHHHHHHHHTHHH......HHH.......HSHHHHHHHHHHHHHHHHHHHHTTS CS
        CMAS 193 Gelpsieeiee...eiseagftvvdveslrahYakTLkaWaealqenkde......aia.......lvseevarmyelYLagcaeaFrkgy 267
                 G+lp+i+++++     s++ + v  +e+++ hYakTL++W+e ++en de      + a          + ++r +e+Y+++c++ F++++
  KKY15618.1 201 GHLPTITQLVDsiaRGSNNTLIVDGIENIGGHYAKTLRIWKESFMENFDErvrpalI-AehrgmtqQDADLFMRKWEYYFTYCEAGFNTKT 290
                 ********99933335688999999*********************99873333321.112221102335699**************9876 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   2.2e-14   3.5e-11       1      97 []      70     168 ..      70     168 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 2.2e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSS.STTTEEEEEEESTGGGSSHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpf.edgsfDlvvssgalhhlsdedlekalkeiar 91 
                      vL++G+G G +++++  r g ++vt + +s e+ e a++r++e+g+  n+e++ +d ++lp   +g +D +vs+ +l+ + +e l+++++ + +
       KKY15618.1  70 VLEIGTGWGSFAIRAVGRTG-CRVTSLTLSREQKELAEKRIAEAGFteNIEVLLCDYRALPMpREGPYDKIVSIEMLEAVGREFLATYFECVDK 162
                      9*************999987.****************************************63677*******989****************** PP

                      HEEEEE CS
  Methyltransf_25  92 vLkpgG 97 
                      +Lkp+G
       KKY15618.1 163 LLKPQG 168
                      ****99 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   1.6e-12   2.6e-09       1      95 [.      71     171 ..      71     172 .. 0.94

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 1.6e-12
                      EEET-TTSHHHHHHH.HTTSEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-T.T-EEEEEEES-CCC-..CCHHHHHHHHHHHE CS
  Methyltransf_11   1 LdvGcGtGrlaeala.krgarvvgvDlskemlklakekaseegl..kvefvvadaeklpfed.nsfDlvvssevlhhv..edpekalkeiaRvL 88 
                      L++G+G G++a     ++g+rv+ + ls e+ +la++++ e+g+  ++e++ +d + lp++  + +D +vs e+l+ v  e ++ +++ + ++L
       KKY15618.1  71 LEIGTGWGSFAIRAVgRTGCRVTSLTLSREQKELAEKRIAEAGFteNIEVLLCDYRALPMPReGPYDKIVSIEMLEAVgrEFLATYFECVDKLL 164
                      89****9999887776999****************************************99846***************999************ PP

                      EEEEEEE CS
  Methyltransf_11  89 kpgGllv 95 
                      kp G ++
       KKY15618.1 165 KPQGGIA 171
                      **99665 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   1.3e-12   2.2e-09       2     125 ..      65     188 ..      64     227 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 1.3e-12
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevl..naladpdk 92 
                      ++g +vl++G+G G +++++  +  ++++v+++  s e  elA+++ ++ g++ n+e+  +d  +l++   + ++D i+s e l      +++ 
       KKY15618.1  65 KRGDHVLEIGTGWGSFAIRAVGR--TGCRVTSLTLSREQKELAEKRIAEAGFTeNIEVLLCDYRALPMP-REGPYDKIVSIEMLeaVGREFLAT 155
                      67899****************55..679*************************9*************75.4489**********77777899** PP

  Methyltransf_31  93 ileeiervlkpggilliedprllaelpakveee 125
                      ++e + ++lkp+g +++ ++ ++ e +++++++
       KKY15618.1 156 YFECVDKLLKPQGGIAVFQCITMPETRYEAYSK 188
                      ********************9888888766665 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   9.5e-12   1.5e-08      11     120 ..      53     176 ..      44     209 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 9.5e-12
  Methyltransf_23  11 dklerllpk..lraggrvLdiGcGtGillevl.rengfsvtgvDlspeaveiae........kakkaqkdqfdeqeaaepqgkfdlIvlrevle 93 
                      +kl+r+ ++   ++g  vL+iG+G G+++  +  + g+ vt   ls+e+ e+ae        +    +  + ++    + +g +d Iv++e+le
       KKY15618.1  53 RKLDRFIDNakIKRGDHVLEIGTGWGSFAIRAvGRTGCRVTSLTLSREQKELAEkriaeagfTENIEVLLCDYRALPMPREGPYDKIVSIEMLE 146
                      4555555333289999***********998876888*****************95555554444444444444446666999************ PP

  Methyltransf_23  94 hvp..dppellrqiatllkpg.Gylllsep 120
                       v    ++ ++ ++ +llkp+ G ++++ +
       KKY15618.1 147 AVGreFLATYFECVDKLLKPQgGIAVFQCI 176
                      **9545**************7699999875 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   6.3e-08    0.0001       1      98 [.      71     169 ..      71     170 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 6.3e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl..kdirevldnirkl 92 
                      LeiG+G Gs++ +   +  ++++t + +s+++ e a++++a+ +   n +v l +  +l  + ++ +D +v+++ l+++  + ++ +++ + kl
       KKY15618.1  71 LEIGTGWGSFAIRAVGR-TGCRVTSLTLSREQKELAEKRIAEAGFTENIEVLLCDYRALPMPREGPYDKIVSIEMLEAVgrEFLATYFECVDKL 163
                      8*********9999888.9***********************99866555555555555444449***************888889******** PP

  Methyltransf_12  93 LkpgGr 98 
                      Lkp G 
       KKY15618.1 164 LKPQGG 169
                      ***985 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.2e-07   0.00019      65     147 ..      58     140 ..      48     158 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.2e-07
                 HHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTC.EEEEEESBHHHHHHHHHHHHHCTTC.SEEEEES-GG.GTTGGG-SEEEEE CS
        PCMT  65 alellelkkgarvLevGsGsGyltavlarlvgekg.rvvsierikelveeakrnlkkldle.nvivvvgDGr.kGyeekaPYdaih 147
                 +++  ++k+g++vLe+G+G G  +    r vg++g rv s+  ++e  e a++++ + + + n+ v   D r   ++ + PYd+i+
  KKY15618.1  58 FIDNAKIKRGDHVLEIGTGWGSFAI---RAVGRTGcRVTSLTLSREQKELAEKRIAEAGFTeNIEVLLCDYRaLPMPREGPYDKIV 140
                 5566679************997653...566665449*******************999876********87358999******96 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00019      0.31      92     139 ..     125     172 ..      53     177 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00019
      DUF938  92 vereappapasidailsinllHispwsaveglfagagellkkkavlvi 139
                 + +  +p + ++d i+si +l   + +   ++f+ +++llk+++ + +
  KKY15618.1 125 YRALPMPREGPYDKIVSIEMLEAVGREFLATYFECVDKLLKPQGGIAV 172
                 33333456689*******************************997766 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.3e-05      0.07      77     150 ..     100     169 ..      47     191 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.3e-05
                 HHHTTSGGGGGEEEE--...........-TTT---SS-..EEEEEEESSTTTS-GGGHHHHHHHHHHHEEEEEE CS
        TPMT  77 eeanlepkvkelsgvkeysageiellcgdvFtlraeelgkfdliydraalvAlppelreryakslaelLkpdge 150
                 e+++l +k    +g+ e    +ie+l +d+ +l+  + g++d i    +l A+ +e  + y + + +lLkp+g 
  KKY15618.1 100 EQKELAEKRIAEAGFTE----NIEVLLCDYRALPMPREGPYDKIVSIEMLEAVGREFLATYFECVDKLLKPQGG 169
                 34445555444455555....8*************************************************987 PP

>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.3e-05     0.086      44     109 ..      63     126 ..      36     176 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.3e-05
                     HHHT--EEEEE--TTSHHHHHHHTTS-TT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HH CS
  Methyltransf_3  44 klvnakrvleiGvftGyslLatalalPeDGkilaididreayeialkfiqkagvaekieliegdal 109
                     k+    +vleiG+  G+  +a+        +++++   re+ e+a k i  ag+ e ie+   d +
      KKY15618.1  63 KIKRGDHVLEIGT--GWGSFAIRAVGRTGCRVTSLTLSREQKELAEKRIAEAGFTENIEVLLCDYR 126
                     44445589****5..7777666555556679****************************9988755 PP

>> HCV_capsid  Hepatitis C virus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00017      0.27      51     104 ..      46      97 ..      29     108 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
  HCV_capsid  51 tsersqprgrrqpipkarrrearswlspGtlgpstalralvGrdGscglagall 104
                 + e++q r+  + i +a+ +++   l+ Gt + s a+ra vGr G c ++   l
  KKY15618.1  46 SLEQAQYRKLDRFIDNAKIKRGDHVLEIGTGWGSFAIRA-VGRTG-CRVTSLTL 97 
                 67999999999***************************8.69999.86665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2095.76
//
Query:       KKY15619.1  [L=324]
Description: putative rna exonuclease 4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-19   68.7   0.0    1.9e-18   67.5   0.0    1.6  1  RNase_T   Exonuclease


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   1.1e-22   1.9e-18       1     165 []     127     278 ..     127     278 .. 0.79

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 1.1e-22
                 EEEEEEESSSTTCTTS-EEEEEEEEEETTCCEEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHHHTCCCETTTCEEEESS CS
     RNase_T   1 vviDlEttgldakekdeiieiaaisidggeneigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrklallvahnaafdvgfl 99 
                 v+iD+E++g+ +  +d+  ++a++s ++    +++ +++yv+p+e   +td+ t ++gi +++  +a+sf++v ++++ell+ +++lv+h         
  KKY15619.1 127 VAIDCEMVGVGP-NPDKESALARVSAVNFN--GDQVYDSYVRPKEE--VTDWRTHVSGIQPKHMVNARSFEKVQKDIAELLD-GRVLVGHA-------- 211
                 89**********.7*************998..8*************..**********************************.88888866........ PP

                 HHHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHC...HHHHHHHHHTTCHSSSS.TSSHHHHHHHHHHHH CS
     RNase_T 100 raadkrilkkevpkrnqfldtlildkatlkelar...tsldklaeklgleedgr.aHrAldDaeataklf 165
                  ++d + l + +p   ++ dt++   + ++++a+    +l+ la  ++   +++ +H++++Da+a++ +f
  KKY15619.1 212 IRNDLQALLLSHP-KRDIRDTAKH--QPFRRYAGggtPKLKVLASAILGISIQSgEHSSVEDARACMLIF 278
                 3333333333344.3334444444..333333334446677788888888888889*********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2214.33
//
Query:       KKY15620.1  [L=656]
Description: putative nucleoside diphosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-107  359.9   0.0   2.2e-107  359.4   0.0    1.1  1  GDA1_CD39  GDA1/CD39 (nucleoside phosphatase) family


Domain annotation for each model (and alignments):
>> GDA1_CD39  GDA1/CD39 (nucleoside phosphatase) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  359.4   0.0  1.2e-111  2.2e-107       9     413 ..       5     465 ..       2     471 .. 0.91

  Alignments for each domain:
  == domain 1  score: 359.4 bits;  conditional E-value: 1.2e-111
   GDA1_CD39   9 kygiviDAGSsgsrlhvykwkde.......kesllqivkliee....vkklePGlSsfekkpeeaa.eylkpllelaeeviPeekrsetpvlikATAGl 95 
                 +yg+++DAGSsg+r+++y+w d+       ++  l++ ++i+     + k++PG+Ssf++ p+ ++ ++lkpl e a ++iPe++ s tp+++ ATAG 
  KKY15620.1   5 RYGVILDAGSSGTRIYIYRWLDNararkdaSQAELKSLPVIDTkdkwTLKTHPGVSSFGETPNLIGpDHLKPLYEHALDIIPEDQVSDTPIFLLATAGA 103
                 8*******************99999999996666666666666667899*************999758******************************* PP

   GDA1_CD39  96 RLlkeekkekilkalrnklkklsefkved..qgiriidGeeEGiYgWiaiNYllGkfnkea..pevskqetvgvlDlGGaStQiafepqeeseiaekve 190
                 RLl+e ++++ l++++   +++++f   +  q+ir+i Ge+EG+YgWia NYl G f++ +   + + ++t g+lD+GGaS+Qiaf+p+  +e  ++ +
  KKY15620.1 104 RLLPESQRKELLRQICTYTQSTTHFLLPNcdQHIRVIPGETEGLYGWIAANYLVGGFDNPGehAHGKGHHTYGFLDMGGASAQIAFAPN-ATEAEKHAN 201
                 ************************9987666***************************987435567899*******************.666667777 PP

   GDA1_CD39 191 die.elklqekledkkyklyvtsfLgyGanealrkklaklikkasee...vlkdpClprglektvevkdle......fkqfaikgtgnyeqCrksikel 279
                 d +    ++++ + ++y ++vt++Lg+G+++a++++l++l+++ ++    ++ dpClp gl ++++ + l       +++ +  gtg++++C + + +l
  KKY15620.1 202 DLKlLRLRTVDGSVSEYRVFVTTWLGFGVHQARQRYLEELLDSINKSkelEIPDPCLPTGLLTKMDGTILPtadashTSDSHLLGTGKFDECLRRTFPL 300
                 77645677889999************************9987776666679*********999887665556678889999****************** PP

   GDA1_CD39 280 lnknakCkaeeClfngvfapsidl.lqklfgaseyfYtvsdvlklggek..vklekltealrkfCkknweeikaeskkske.ksisee...eaCfkgay 371
                 lnk+ +C++e+Cl+ngv+ p id+  ++++g sey+ +++ ++++g++    +++ +++ +  fC+++w++ik+++++ k  k+i+e+   e Cfk+++
  KKY15620.1 301 LNKDVPCEDEPCLLNGVHVPAIDFdVNHFLGISEYWHSTHGIFEMGAKDtaYDFNTYQHRVSDFCSQDWDTIKKGVASGKWgKKIDEQqsyEICFKASW 399
                 ************************999999****************99877899*********************99887527778778999******* PP

   GDA1_CD39 372 vlslLhdGfdldkt.v.......................eelqsvekiaekelgWtLGamlnllka 413
                  +++LhdG  +++  v                       + +q v+ki++ e++W+LG m+ ++++
  KKY15620.1 400 LINVLHDGIGVPRVgVeqietgkngtkdvieagkqkgylDPFQAVNKIKHTEVSWALGKMVLYASS 465
                 *************96699*********************9*********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 3927.18
//
Query:       KKY15621.1  [L=405]
Description: putative mrna decapping hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-34  119.1   0.0    2.2e-34  118.4   0.0    1.3  1  DcpS      Scavenger mRNA decapping enzyme (DcpS) N-terminal
    1.7e-22   80.1   1.9    1.9e-16   60.5   0.0    2.3  2  DcpS_C    Scavenger mRNA decapping enzyme C-term binding


Domain annotation for each model (and alignments):
>> DcpS  Scavenger mRNA decapping enzyme (DcpS) N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.0   2.5e-38   2.2e-34       2     104 .]      10     116 ..       9     116 .. 0.95

  Alignments for each domain:
  == domain 1  score: 118.4 bits;  conditional E-value: 2.5e-38
        DcpS   2 llkkFklervLnedqatkrisllGtidsepAililektafeteeaaklaslkesleelknlgandiYtwllavlk.....qkeeelpdlkinliyPate 95 
                 l++kF++ r+Ln+dq+++ri+llG+i+s+ A+l++e++af++++ ++ +++ +s+++++n+gandiY+w+la ++     ++++ lp+lk+nliyP+t+
  KKY15621.1  10 LIAKFQFGRLLNQDQNGRRITLLGSIESQAALLTAERAAFPSST-ETIQAFLASISSVENIGANDIYHWYLASTQpssseTSSSPLPSLKLNLIYPCTQ 107
                 799****************************************9.8999***********************99999876556899************* PP

        DcpS  96 khikKYskQ 104
                 khi+KYs+Q
  KKY15621.1 108 KHISKYSSQ 116
                 *******99 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0   2.2e-20   1.9e-16       2      89 ..     147     254 ..     146     261 .. 0.95
   2 !   18.2   1.0     3e-07    0.0026      84     111 ..     273     300 ..     266     303 .. 0.83

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 2.2e-20
                 -HHHHHHTTSS-B-EEEE-.............SSEEEEE-SS.-S...SSEEEEEEESS.---SGGG--TTTTTHHHHHHHHHHHHHHHTT-T..-EEE CS
      DcpS_C   2 wvfnilakgkepervvyed.............ekfvvlkDik.pk...aklhllvipkr.dikslrdLtkehlpllkemrekakkvieekyne..vdae 80 
                 w+fni++ +ke+e+++++              e+f++l+D++ ++   + lhll++++r di+slrdL+k+h+ +l++mr+k+ ++  + y e  v+++
  KKY15621.1 147 WIFNIIEGRKEQEDIIVRAhntrtgalteidqEGFLLLPDLNwDRktmSGLHLLALVERrDIWSLRDLRKKHVGWLRTMRDKLLDATVKVYCEqgVERD 245
                 9**************9988889*********************88899*********999*****************************998889**** PP

                 EE--SCCCT CS
      DcpS_C  81 elrvgvhyq 89 
                  l+++vh +
  KKY15621.1 246 MLKLYVHCK 254
                 *******75 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 3e-07
                 -SCCCT--S-S--EEEEE........SS CS
      DcpS_C  84 vgvhyqPsvyhlHlHvisldfespglkr 111
                 + v  qP++yh+H+H++++  e++g ++
  KKY15621.1 273 FNVPDQPTYYHFHIHIVHVMLEASGHTQ 300
                 566779**************99998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 2549.59
//
Query:       KKY15622.1  [L=422]
Description: putative wd repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-16   60.6  11.4    4.6e-05   24.1   0.1    6.9  7  WD40         WD domain, G-beta repeat
    0.00027   21.2   0.3        5.1    7.5   0.0    4.3  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
       0.13   13.2   1.0       0.49   11.3   0.3    2.0  2  TT_ORF2      TT viral ORF2
       0.17   10.5   1.5        7.1    5.1   0.0    2.8  3  Nup160       Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.1     1e-08   4.6e-05       5      38 .]      23      57 ..      19      57 .. 0.91
   2 !    5.5   0.2    0.0078        35       3      37 ..      63      97 ..      61      98 .. 0.70
   3 ?    4.3   0.0     0.019        84      16      35 ..     214     237 ..     195     238 .. 0.78
   4 !   12.1   0.0   6.5e-05      0.29       2      31 ..     253     282 ..     252     285 .. 0.88
   5 ?    2.4   0.0     0.076   3.4e+02      18      37 ..     318     337 ..     296     338 .. 0.77
   6 ?   -1.5   0.0       1.3   5.7e+03       2      24 ..     343     360 ..     342     367 .. 0.74
   7 !   13.5   0.1   2.4e-05      0.11      19      38 .]     401     420 ..     388     420 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1e-08
                EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38
                ++++GH s v++l f +++a+las++ Dg + +W+
  KKY15622.1 23 YVFRGHtSAVNALHFFSNNAYLASADADGWIVVWS 57
                789***777****************99*******5 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0078
                EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37
                +  ++++H +++ ++++  + ++++ G  D+ +r+W
  KKY15622.1 63 PNAVWRAHqGGILGIKNWGETTLITHGR-DHALRVW 97
                5667899977799995444444454466.******* PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.019
                 EEEETTSSE....EEEEETTSEEE CS
        WD40  16 lafspdgaw....lasGsdDgtvr 35 
                 lafs d++     ++sG +Dg+v 
  KKY15622.1 214 LAFSFDQRCkqlvVVSGYEDGHVI 237
                 5688888888876789*9****96 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 6.5e-05
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETT CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdD 31 
                 ++++++++H ++v +l++s+d ++l+s+  D
  KKY15622.1 253 EKIYIYRAHiQPVLGLDVSSDRSFLSSSA-D 282
                 78999*******************97654.6 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.076
                 EETTSSEEEEEETTSEEEEE CS
        WD40  18 fspdgawlasGsdDgtvriW 37 
                 + +d + +a++++D  +r++
  KKY15622.1 318 VRDDDKIFATAGWDARLRVY 337
                 556777789*********98 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 1.3
                 EEEEEEESS.SSEEEEEEETTSSE CS
        WD40   2 qclrtltGH.ssvtslafspdgaw 24 
                 q l +l+ H  + +++      ++
  KKY15622.1 343 QELAVLKWHkEGCHCV------TF 360
                 6678899996668898......44 PP

  == domain 7  score: 13.5 bits;  conditional E-value: 2.4e-05
                 ETTSSEEEEEETTSEEEEEE CS
        WD40  19 spdgawlasGsdDgtvriWd 38 
                 s++ +wla+G++Dg+v +Wd
  KKY15622.1 401 SQHTHWLAAGGKDGKVTLWD 420
                 55779**************9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0     0.004        18      37      81 ..      28      72 ..      23      83 .. 0.81
   2 ?    0.3   0.0       0.2     9e+02      21      62 ..     188     236 ..     180     240 .. 0.60
   3 ?   -3.5   0.0       2.9   1.3e+04      17      32 ..     253     268 ..     253     278 .. 0.77
   4 !    7.5   0.0    0.0011       5.1      43      90 ..     315     361 ..     299     363 .. 0.87
   5 ?    1.2   0.0       0.1   4.6e+02      50      68 ..     404     422 .]     398     422 .] 0.87

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.004
  ANAPC4_WD40 37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81
                 + s v++L++  ++  La a +dg + + +  + +    +++++ 
   KKY15622.1 28 HTSAVNALHFFSNNAYLASADADGWIVVWSLVTRRPNAVWRAHQG 72
                 6789**********************9999888776666666665 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.2
  ANAPC4_WD40  21 vfRl.ngqrvwtl..eedkedsevrsLaWkpdgk....lLavaysdgev 62 
                  +f l + +rv +l  +++ + + v  La++ d +    + + +y+dg+v
   KKY15622.1 188 LFHLpSERRVCQLkaDQSVKTGMVMVLAFSFDQRckqlVVVSGYEDGHV 236
                  5555455677777555666777777777777765332234557888877 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 2.9
  ANAPC4_WD40  17 gellvfRlngqrvwtl 32 
                  ++++++R   q v +l
   KKY15622.1 253 EKIYIYRAHIQPVLGL 268
                  5799999999999887 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0011
  ANAPC4_WD40  43 sLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +L  + d+k++a a  d ++r++++++ + +  l+ ++e    c++++
   KKY15622.1 315 GLVVRDDDKIFATAGWDARLRVYSVKTMQELAVLKWHKEG-CHCVTFA 361
                  677899****************************999995.8888876 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.1
  ANAPC4_WD40  50 gklLavaysdgevrlldae 68 
                   + La + +dg+v l d++
   KKY15622.1 404 THWLAAGGKDGKVTLWDIY 422
                  689************9986 PP

>> TT_ORF2  TT viral ORF2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.56   2.5e+03     105     119 ..     144     158 ..     139     160 .. 0.84
   2 ?   11.3   0.3   0.00011      0.49      19      87 ..     347     415 ..     343     418 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.56
     TT_ORF2 105 dldegdlDeLfaedf 119
                 +l ++d D+L+ae+f
  KKY15622.1 144 ELTSEDSDRLLAEPF 158
                 57899********98 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00011
     TT_ORF2  19 ivrsHdliCgCgdplkHlidlatqlsleepqgkrpkrklilrqspalpaakeekkklakwlettgedae 87 
                 +++ H   C+C  +++ +++    +++e   +   + k++  ++ +++ +  +k++   wl  +g+d++
  KKY15622.1 347 VLKWHKEGCHCVTFAATILRTQPSAGAEVSLPASQALKPATSALVQIKHNRTNKSQHTHWLAAGGKDGK 415
                 6788***************9555555555777777788899999***********************97 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2      0.01        46     229     252 ..      40      63 ..      26      70 .. 0.80
   2 ?    5.1   0.0    0.0016       7.1     229     252 ..      81     104 ..      73     129 .. 0.76
   3 ?   -0.2   0.0     0.064   2.9e+02     229     255 ..     321     347 ..     312     368 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.01
                 TTTEEEEEETT-EEEEEETTTTEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkc 252
                 +++yl+++  dg++ vW+l t ++
  KKY15622.1  40 NNAYLASADADGWIVVWSLVTRRP 63 
                 899****************99875 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0016
                 TTTEEEEEETT-EEEEEETTTTEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkc 252
                 g+t+l +  rd+ LrvW l+ +  
  KKY15622.1  81 GETTLITHGRDHALRVWQLREKDF 104
                 8999*************9987765 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.064
                 TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclat 255
                 ++++ +++  d +Lrv +++t++ la+
  KKY15622.1 321 DDKIFATAGWDARLRVYSVKTMQELAV 347
                 56666778899***********99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2860.40
//
Query:       KKY15623.1  [L=369]
Description: putative pantoate--beta-alanine ligase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-92  307.5   0.0    7.7e-92  307.3   0.0    1.0  1  Pantoate_ligase  Pantoate-beta-alanine ligase


Domain annotation for each model (and alignments):
>> Pantoate_ligase  Pantoate-beta-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.3   0.0   4.3e-96   7.7e-92       2     265 ..      30     357 ..      29     358 .. 0.88

  Alignments for each domain:
  == domain 1  score: 307.3 bits;  conditional E-value: 4.3e-96
                      EEESHHHHHHHHHHHHHTT-EEEEEEE-SS-GHHHHHHHHHHHHHSSEEEEEEEEEGGGSSTTSCTTTSEEEHHHHHHHHHHTT-S........ CS
  Pantoate_ligase   2 iiktvaelrellkelrkegkkvglVpTmGaLHeGHlsLvkaakeendvvvvSiFvNplqFgpkedlekYPrtleaDlelleeagvd........ 87 
                      ++++v elr++ ++l +e+++vglVpTmGaLH+GHlsL++aa++en+ v+vSiFvNp+qFgp+edl++YPrt+++D+++l e++ +        
       KKY15623.1  30 VFREVPELRTFRRQLLSENRTVGLVPTMGALHQGHLSLIEAAARENTDVFVSIFVNPTQFGPTEDLATYPRTWDSDMAQLIELQKSltlpngmg 123
                      8999*******9998788889*************************************************************999999****** PP

                      .........EEE---HHHHST............EEEEECSGGCSTHHHHSTTHHHHHHHHHHHHHHHHT-SEEEEEGGGHHHHHHHHHHHHHTT CS
  Pantoate_ligase  88 .........lvFaPsveemyp............ttvevkelsevlegasrpghFrGVatvvtkLfnivqpdrayfGqKDaqqlavirrlvkdln 160
                               ++FaP++++myp              v++  l ++lega+rp++FrGVatv+tkLfnivqpdr+yfGqKD+qq+a+i+r+v+d++
       KKY15623.1 124 rlhalghisAIFAPTAKTMYPtlppastpdahgSFVTIFPLGSKLEGAARPTFFRGVATVCTKLFNIVQPDRVYFGQKDVQQTAIINRMVRDFH 217
                      ********************99999999999997787789****************************************************** PP

                      -SSEEEEEEEEBETTSEBTTGGGGGS-HHHHHHTTHHHHHHHHHH................BHHHHHHHHHHHHH....THTTEEEEEEEEEET CS
  Pantoate_ligase 161 lpveivavpivReedgLAlSSRNkyLseeerkaAlvlykaLkaak................eaealkeaakeele....eeelekadyveivda 234
                      +p++++++p+ Re+dgLA+SSRN+yL +++r+  l+l++aL +a+                +++ l++++k++ +    ++++ ++dyv+++d 
       KKY15623.1 218 IPTDVRIMPTSREPDGLAMSSRNVYLGDRRRAVGLALSRALFTAQkvygdgelsrskivgaAHQVLNAEIKKQGSlqpgQRAWFEVDYVSLADY 311
                      *********************************************99999988666555532222223444433322333333345******** PP

                      TTSS..BSSB...SEEEEEEEEEE.......T......TEEEEEEE CS
  Pantoate_ligase 235 etleeleleee..kkavllvaakv.......g......kvrLiDni 265
                      e ++e+e + +   +avl++a+++       +       vrLiDn+
       KKY15623.1 312 EGMDEIEDKVDpdFGAVLSAAMRMlpveqplDdeksqkVVRLIDNV 357
                      *****96554466779*******9766655505555559******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 2404.39
//
Query:       KKY15624.1  [L=876]
Description: putative atp-dependent rna helicase dbp7 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-43  148.9   1.5    2.5e-43  147.9   0.1    2.0  2  DEAD           DEAD/DEAH box helicase
    6.5e-20   71.5   0.2    7.1e-19   68.2   0.0    2.7  3  Helicase_C     Helicase conserved C-terminal domain
    5.5e-17   61.8   0.4    1.2e-16   60.6   0.4    1.6  1  DUF4217        Domain of unknown function (DUF4217)
    2.3e-07   31.0   0.8    6.3e-07   29.6   0.0    2.0  2  ResIII         Type III restriction enzyme, res subunit
     0.0083   15.4   0.0     0.0083   15.4   0.0    1.9  2  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.9   0.1     7e-47   2.5e-43       1     176 []     182     380 ..     182     380 .. 0.91
   2 ?   -0.6   0.1      0.28     1e+03     136     168 ..     840     868 ..     800     872 .. 0.65

  Alignments for each domain:
  == domain 1  score: 147.9 bits;  conditional E-value: 7e-47
                 -HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHS..............TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEE.EEET CS
                 xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
        DEAD   1 tdiQaeaiplil.gggdvlvaaeTGsGKTlaflipvlqivyet..............kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvl.liig 83 
                 t+iQ++ai ++l ++ d +++ eTGsGKTla+l+p++q++++               ++++g  a+i++PtreL++q+   l+++++ ++  v   +ig
  KKY15624.1 182 TSIQKAAITQLLkEDADAFIQSETGSGKTLAYLLPLVQRIMNLkstpghtsgsgtnvHRDSGLFAIILAPTRELCKQISVVLERVLNCAHWIVAgTVIG 280
                 78**********5556************************9999999999999999889999*************************8775555599** PP

                 TSSHHHHHHHHHTTCSEEEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTT......SEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxx RF
        DEAD  84 gvaardqlskldngvdivvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklq......rqvivlSATlpkdvkk 175
                 g+++++++++l++g++i+v+tpgrl+d+l +t+ ln+s vr+l+lDE drl+d gf+++i++i+++l++ +  +++       r++i++SAT++ +v++
  KKY15624.1 281 GEKKKSEKARLRKGINILVATPGRLADHLdNTKVLNISTVRWLILDEGDRLMDLGFEEEIQKIVAKLDERQRPTPKVtllpsrRTTILCSATMKMNVQR 379
                 *****************************88999*********************************877777664379998667*********99987 PP

                 H CS
                 x RF
        DEAD 176 l 176
                 l
  KKY15624.1 380 L 380
                 5 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.28
                 TTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 136 qgfsdfinrilnqlpqitcdgklqrqvivlSAT 168
                 q+++++ ++++++ +    +  + r ++++S T
  KKY15624.1 840 QQQQQQQEEMIRKKK---MRS-KMRDMMMMSGT 868
                 444445555444442...222.23336666665 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.4   4.9e+03      11      36 ..     439     465 ..     427     486 .. 0.70
   2 !   68.2   0.0     2e-22   7.1e-19      44     111 .]     537     605 ..     525     605 .. 0.94
   3 ?   -1.7   0.4         1   3.6e+03      31      59 ..     813     843 ..     783     858 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.4
                 HHTTTTSEEEEEESSHHHHHH.HHHHH CS
  Helicase_C  11 kleeeggkilifvntidrlek.vklll 36 
                  ++ +  k+++fv   d+++  ++l++
  KKY15624.1 439 ARKGSVMKAIVFVSCADSVDFhFDLFT 465
                 56667779999*999999876666664 PP

  == domain 2  score: 68.2 bits;  conditional E-value: 2e-22
                 EEESTTSTHHHHHHHHHHHHTTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  44 avlhgelpqnereeileqfnkgesd.vLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRag 111
                  +lhg+lpq+ r  i+++f k +   +Li+tdva+rG+d+p+++lVi +d+ ++ ++  +riGRt+R g
  KKY15624.1 537 HKLHGSLPQKTRTYIIQSFTKSTEPsLLICTDVASRGLDLPNLDLVIEYDPAFSSEDHLHRIGRTARLG 605
                 679****************9988888*****************************************86 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1
                 H...HHHHHHHTTSTEEEESTTSTHHHHHHHH CS
  Helicase_C  31 k...vklllekkgikvavlhgelpqnereeil 59 
                 +    + l++k+++  +v++g+ +++e+++  
  KKY15624.1 813 QnqiSRDLQRKFDLDNLVVNGT-EKEEQQQQQ 843
                 1344577778888888899994.444444333 PP

>> DUF4217  Domain of unknown function (DUF4217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.4   3.4e-20   1.2e-16       3      59 ..     693     751 ..     691     752 .. 0.95

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 3.4e-20
     DUF4217   3 qkleslcakdrdlkelAqkAfvsyvraYsvhlake..iFrvkkLdlealAksfGLleaP 59 
                   le+++++ ++   lA+kA++s++raY++h ++e   F++k+L+l++lAksfGL++ P
  KKY15624.1 693 LLLERHILSAPQSLTLARKAYQSHIRAYATHTSSErrYFDIKNLHLGHLAKSFGLRDKP 751
                 5689999*************************************************999 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.8e-10   6.3e-07       4     153 ..     181     343 ..     178     360 .. 0.85
   2 ?   -2.6   1.0       1.3   4.6e+03     109     127 ..     803     841 ..     764     860 .. 0.51

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.8e-10
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S.....................-EEEEESSHHHHHHHHHHGGGGTGG..... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkee................kflflvprkslleqtleefkkflseayke. 84 
                 + + Q+ ai++ll     k+d  ++i+ +TG+GKTl + + l++r+++ ++                   +++l+p+++l++q    ++++l++a+   
  KKY15624.1 181 PTSIQKAAITQLL-----KEDADAFIQSETGSGKTLAYlLPLVQRIMNLKSTPghtsgsgtnvhrdsglFAIILAPTRELCKQISVVLERVLNCAHWIv 274
                 5678999999998.....899*****************99999999998777799*************999**************99999999987668 PP

                 GEEEESSS-B--........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS....TTTHHH CS
      ResIII  85 igkkvsgdkkka.kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak...kswrei 153
                 +g+++ g+kkk+ k++ ++ ++ilv+t  +l  ++     +++ l  ++   +i DE  rl +    +++++i
  KKY15624.1 275 AGTVIGGEKKKSeKARLRKGINILVATPGRLADHL----DNTKVLNISTVRWLILDEGDRLMDLgfeEEIQKI 343
                 8888988888887888899****************....6778888888889999998888874333355554 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.3
                 EEHHHHHHTH............................H CS
      ResIII 109 ttiqsldadseee....................eeesee 127
                 +t +++d++s+++                    +ee+++
  KKY15624.1 803 STNNTADSQSQNQisrdlqrkfdldnlvvngteKEEQQQ 841
                 333333333333344444444444455555554222222 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.3e-06    0.0083      85     150 ..     539     603 ..     530     613 .. 0.87
   2 ?   -4.9   3.5       3.5   1.3e+04     212     239 ..     820     847 ..     798     860 .. 0.41

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.3e-06
  ERCC3_RAD25_C  85 iyGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvliqisshfgsrrqeaqrlGriLr 150
                    ++G+ +++ r+ i+q+f k+++ + ++   v+   +DlP+   +i  +  f+s      r+Gr  r
     KKY15624.1 539 LHGSLPQKTRTYIIQSFTKSTEPSLLICTDVASRGLDLPNLDLVIEYDPAFSSE-DHLHRIGRTAR 603
                    79********************************************99999885.55677777665 PP

  == domain 2  score: -4.9 bits;  conditional E-value: 3.5
  ERCC3_RAD25_C 212 keeqkellqkvlaakdeeaeeeelekel 239
                     +++ +l + v++ +++e++++++++++
     KKY15624.1 820 LQRKFDLDNLVVNGTEKEEQQQQQQQQE 847
                    3333333333433333333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (876 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1762  (0.0982765); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.47
# Mc/sec: 5595.64
//
Query:       KKY15625.1  [L=426]
Description: putative c6 zinc finger domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-08   32.7   1.9    6.4e-07   28.5   0.2    2.1  2  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.2   3.6e-11   6.4e-07       4     131 ..      11     130 ..       8     143 .. 0.85
   2 !    3.8   0.1    0.0012        21     240     343 ..     200     316 ..     173     337 .. 0.59

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 3.6e-11
  Fungal_trans_2   4 dyyldnvapllspvpessnpfrkvllplalsnkallhallalsafhlqskgpkdslereakrykslalkelqealaelsstlsrnekykdiLaai 98 
                     + ++++v  ++   +   + f ++l   al+ + l  a l+ +a+hl ++ ++ + e++a++y+++a ++l ++l+++++++         L+a+
      KKY15625.1  11 QVFVEEVGLWMDSMDAD-KTFSRILPFHALRQPMLKFAFLSCGARHL-TLVNSAYPEERALSYYNTATQLLLKSLQNPERDSA--------LCAT 95 
                     56666666666666664.8899*************************.56666667999************************........5555 PP

  Fungal_trans_2  99 ..LllcsieissgdvsdwrvhLeaatsliksrggs 131
                        +l+++ei+s    +   h+ +a++lik  g +
      KKY15625.1  96 taVILNVYEIMSEKALQRMNHIAGARALIKECGWN 130
                     49************888888**********98866 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0012
  Fungal_trans_2 240 prssdlepdldeterassls........kdltelfrlaaliylyrlv..lglpps......spevqelvkk.llellellpsspvaiasLlWplF 317
                     +++  +++ + + e+++ ++        + +++lf+++a+  l ++      + +       + ++   ++ +  + +++ + +va+as+  +l 
      KKY15625.1 200 SQIPRFQEASAHAEQLRLNQriqvikraTIVARLFYHTAMALLGSMHpaA--SMDpslaseMHDMKVYHSRmICGIVAHVKDRGVASASIR-CLA 291
                     33333333333333333333444444555568888888888888777442..333336333333333333313345555557777555555.999 PP

  Fungal_trans_2 318 iaGceavdeddRdfvrrrleeleqsr 343
                     ia+ +++ ++++++v+++++++  ++
      KKY15625.1 292 IAAECLTVRQEQEEVLEMFDKIK-KE 316
                     99977777789*********998.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 2748.98
//
Query:       KKY15626.1  [L=345]
Description: putative phosphatidylinositol-4-phosphate 5-kinase core [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-44  151.6   0.0      3e-42  144.8   0.0    2.0  1  PIP5K     Phosphatidylinositol-4-phosphate 5-Kinase


Domain annotation for each model (and alignments):
>> PIP5K  Phosphatidylinositol-4-phosphate 5-Kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.8   0.0   1.6e-46     3e-42       6     272 ..      78     334 ..      73     336 .. 0.82

  Alignments for each domain:
  == domain 1  score: 144.8 bits;  conditional E-value: 1.6e-46
                 EEE----SSS--EEEETTSSEEEEEE-HH.HHHHHHH.HHHHHHHHHTT-TT--S--EEEEEEEE.E......TTEEEEEEEEE-SS-TTS...--S.. CS
       PIP5K   6 kelsseGkSgsffylteDkkfiiKtitks.evkflrk.llpeYyehvkenpnsLltrfyglhrvklk......ggkkvrfvVmenlfptdk...eih.. 91 
                   +++ G+Sgs+f++t D+k++iK+++++ e++f++  ll++Y +h++++p+sLl+r+++l+           g   ++++Vmen+++ ++   + +  
  KKY15626.1  78 VPVGDLGYSGSTFFTTPDAKYLIKSLPRHfEYTFFKTkLLEPYKKHMHSQPSSLLVRITDLLHTPSVslgrifGTAPSHHIVMENILYGKEassQADqw 176
                 567899******************************99**********************998833357777788888*********954433333366 PP

                 EEEEE-S--TT-S--HHHH.TSSS-EEEHHHHHHHST.EEE-HHHHHHHHHHHHHHHHHHHHTTB-S-EEEEEEEB----------------------- CS
       PIP5K  92 eryDLKGstvgReakkkee.ekkektlkDlDliekkeklklgkekreelleqlekDvefLeslnimDYSLLlGihnsekeekeekkesessssekesek 189
                 e+yDLK+  ++   ++        +  kD+ + + ++k+++++++++ell+ +++D+++Le  n++DYSL++      +++                  
  KKY15626.1 177 ETYDLKPIDYFYPERDIAGgALVPQSVKDRLVDKFDDKIRVTSSQKAELLRIVDADTKLLEGTNAVDYSLFVVRCPVPNDTIP---------------- 259
                 ***********2222222222223349***9999999***********************************54333322221................ PP

                 ---------------------SEEEEESSSSEEEEEEEEE----B--------------.......--------TTHHHHHHHHHHHHHH CS
       PIP5K 190 seeeaseeeeeseeeedeegekakeensedgkevyylgiIDiLqkynlkKklehalksl.......kkdkksisavpPkeYaeRFlkfie 272
                              + +++++   ++ +s+dgk+vy++ ++D+  +++     ++a+++l       +++++++++++P+eY++RF+++++
  KKY15626.1 260 -------------TLKSRTSPWRSGLRSSDGKWVYRAVLLDF--FWAKDALHAKAMTGLikgynvfDQKGPMSITTTPSEYRKRFMDMVS 334
                 .............1222334455678999*************..9****99999999999999**999********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2302.43
//
Query:       KKY15627.1  [L=600]
Description: putative acid phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-09   36.0   0.1    1.2e-08   34.8   0.1    1.5  1  His_Phos_2  Histidine phosphatase superfamily (branch 2)
  ------ inclusion threshold ------
        8.9    6.7   7.1         61    4.0   0.1    3.1  3  DUF4692     Regulator of human erythroid cell expansion (RHEX


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.1   1.3e-12   1.2e-08      74     381 ..      50     371 ..      44     373 .. 0.82

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.3e-12
                 .B-HHHHHHHHHHHHHHHHHCH.............TCCHTTSS--TTEEEEEESSHHHHHHHHHHHHHHCHCCC---.............S-TTSTTGG CS
  His_Phos_2  74 elthaGrkqaeelGrqfrqrYp.............lgLlrlhltykdlkirassegRviaSAaafakGllglegelt.............dllskdkdl 146
                  lt+ G +q+++ G  fr rY+              g+   +l +++l i a se+ ++aSA+af++Gl+++ + ++             + + + + l
  KKY15627.1  50 TLTSLGAQQLYNAGAGFRDRYVdpstssnehstavVGISAYELDNSQLSILAYSEEYIVASAQAFLQGLYPPIE-TSlnrtldddeselsNGTIITSPL 147
                 59*********************************9999999999*************************8888.336998988886664444444555 PP

                 G-TTTTCCCEEEHHHHCCCCHHCTTSHHTCHHHCHHHTGGHCHHHHCHCCCCCHHHHH..HHCHHH....CTTEEEE-HHHHHHHHHHHHHHHHHHCT- CS
  His_Phos_2 147 lddsnaakdlldeakkklkelltegaeacpafewpikvakrvdelvkylkedmdenia..krleql....cpgesnllakerwdklercfyeknkfdis 239
                   ++  +  + +  +  l++++++g+++cp+++     + r     +++ e++d + a  + l+ +    + ++s++  ++ w  ++   y     ++ 
  KKY15627.1 148 NGYQYPQLYTAS--SVDLNSIWIAGNTQCPTYTT----SGRAYWNTEEYLEILDSSQAfyDSLQPNildgVFSNSSVGYFNAWYIWDYLNYGYI--HNE 238
                 555544444444..589*****************....88888888888888888888664444446666666779999999999999999999..999 PP

                 TTGGGCTH..HCHHHHHHHHHHHHHHHC..........TTTCCCCHHHHHHHHHHHHHHHCTSSSEECCSCCCECS-SEEEEEE-HHHHHHHHHHCTTT CS
  His_Phos_2 240 kicdlydemkydalhnrylkdleelyklakv..ipqEygigpeeklkiGllllnpllkkilndlqrtreeatperhvrlrlyfthdshiysllnaLglp 336
                  i  + +    d+ + r++ d +  + +  +  i    + ++ ++ + G  l+++l   +  ++q +       ++ +l+  f++ + ++++ ++ gl 
  KKY15627.1 239 TIASVLSA--DDLAQARSYAD-RWVFAMNGNtsISSSLDSSDHIRAVAGRTLATELTSVMYTNVQSQG------TKSKLVTMFGSYEPMVAFTSLAGLA 328
                 99999999..99999888888.45666655679*****************************999999......899***************9999*** PP

                 TTBTTB.SSS.TTT..HCCCS-CT-EEEEEEEEE........TCTTTEEEEEE CS
  His_Phos_2 337 eelagedslaaldrlsaspelpymsqivfelyed........ssekkfyvrll 381
                 + ++++            +++ ++s++vfely          +s ++  vr+l
  KKY15627.1 329 TAANTQ----------FYSQPSPGSSMVFELYALqsnsstsyPSSDDLVVRFL 371
                 *99999..........9999************942333334433333666666 PP

>> DUF4692  Regulator of human erythroid cell expansion (RHEX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1    0.0068        61      71     129 ..     254     317 ..     235     327 .. 0.64
   2 ?    1.4   4.0     0.045     4e+02      70      98 ..     421     449 ..     415     456 .. 0.68
   3 ?   -0.5   0.0      0.17   1.5e+03       5      46 ..     460     499 ..     458     550 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0068
     DUF4692  71 tsvsepryrhdsdtssdss.dssds...sspp.tsqatkdvnYtqvvFsapgglknesaldYEn 129
                   +    +  +++ts  ss dssd     +          v Yt+v    ++++  +    YE 
  KKY15627.1 254 SYADRWVFAMNGNTSISSSlDSSDHiraVAGRtLATELTSVMYTNVQSQGTKSKLVTMFGSYEP 317
                 4445556777899997776699988632222212334467889988887777777666666765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.045
     DUF4692  70 stsvsepryrhdsdtssdssdssdssspp 98 
                 s+sv +  y +ds+  s ss ss sss+ 
  KKY15627.1 421 SLSVFCAAYEEDSEDPSCSSSSSSSSSSR 449
                 67788899999997666555555554443 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.17
     DUF4692   5 glviavvsliLqacllvainyLLsRhiakeserllkaarlqa 46 
                 gl+ a+++l+L a+l +  + L +  +  + er+ k++ l+ 
  KKY15627.1 460 GLIGAIIALVLVALLTLLASTLFG--MRFYRERTKKRSELNG 499
                 778888999999998888888876..5566677777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.54
# Mc/sec: 3318.29
//
Query:       KKY15628.1  [L=832]
Description: hypothetical protein UCRPC4_g06260 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (832 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.53
# Mc/sec: 4744.74
//
Query:       KKY15629.1  [L=1058]
Description: hypothetical protein UCRPC4_g06261 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-05   24.6   0.0    4.1e-05   24.6   0.0    4.6  5  FNIP_N    Folliculin-interacting protein N-terminus
  ------ inclusion threshold ------
       0.02   14.3   0.0      0.043   13.3   0.0    1.5  1  Cupin_4   Cupin superfamily protein
      0.027   14.5   0.1       0.13   12.2   0.0    2.1  3  FNIP_M    Folliculin-interacting protein middle domain
      0.062   12.9   0.1       0.13   11.8   0.1    1.5  1  FNIP_C    Folliculin-interacting protein C-terminus


Domain annotation for each model (and alignments):
>> FNIP_N  Folliculin-interacting protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   9.2e-09   4.1e-05     107     150 ..      33      74 ..       8      78 .. 0.78
   2 ?   -3.6   4.5         4   1.8e+04      72      72 ..     517     517 ..     432     630 .. 0.57
   3 ?   -2.6   3.1       2.3     1e+04      39      80 ..     639     681 ..     597     709 .. 0.50
   4 ?   -2.0   0.2       1.4   6.3e+03      81     111 ..     764     795 ..     747     833 .. 0.60
   5 ?   -3.5   0.0         4   1.8e+04      49      75 ..     947     958 ..     919    1002 .. 0.54

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 9.2e-09
      FNIP_N 107 etekqraareyaeevntlgeciFGssamsYkGsstKvHivpsds 150
                 +++     +e ++++ tl++c+FGs+    kG+stK+Hi+  d 
  KKY15629.1  33 NEKDVSPGQEAKDDTRTLLDCMFGSL--GDKGTSTKMHILNGDG 74 
                 333333445999*************6..68**********9876 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4
      FNIP_N  72 l 72 
                  
  KKY15629.1 517 T 517
                 1 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.3
      FNIP_N  39 skassrqssrhsrkasslsassrrspts.prksslsqrplviq 80 
                 ++++ ++s+++s+++ s+ + +rr+ ++ p k + s+ +++++
  KKY15629.1 639 WTGKHESSAESSVTIPSIRQDDRRKRSQsPVKRPTSTLAQMVD 681
                 3444444555556666666664444222133433333333332 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 1.4
      FNIP_N  81 sqprqgaFdrrsslslsssrsesaq.letekq 111
                 ++p+  + d ++s++++ss+ + a+ +  e+q
  KKY15629.1 764 RTPSLASMDGMASMHSHSSTVNLASsMTIENQ 795
                 33334446666666644444444443333333 PP

  == domain 5  score: -3.5 bits;  conditional E-value: 4
      FNIP_N  49 hsrkasslsassrrsptsprksslsq..r 75 
                 hs                 rk+sls+   
  KKY15629.1 947 HS-----------------RKTSLSNpsG 958
                 22.................3333333222 PP

>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   9.5e-06     0.043     190     274 ..     220     305 ..     219     344 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.5e-06
                 TT-EEEEEBBT.-CCEEEEEECCEEHCCHHHCHHHHHHHHHHHHHHHCTSCHHCTCGTTTGGGTTS-HHHHHHHHHHHHHHHHHHH CS
     Cupin_4 190 rgviHqgvaed.esltlSvglraptaaellesvldllldklpeiderlrdallravqargeidsdsidalaaqlsellrdpallee 274
                 r+  H +va + esl+ S+g  +p+  +ll+++  +++ +l +  ++  dal ++++   +i s+ +++ ++ + +ll++++l+ +
  KKY15629.1 220 RRASHAAVARNpESLSSSCGSDMPSSWTLLDAFPGFAARALADSVDARIDALVESWDVVSRILSALQRDASEVILKLLQEKELASR 305
                 7899************************************999955555799999***********************98887765 PP

>> FNIP_M  Folliculin-interacting protein middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.3   5.7e+03      13      40 ..     196     226 ..     188     334 .. 0.54
   2 ?   12.2   0.0     3e-05      0.13     123     162 ..     382     421 ..     375     433 .. 0.79
   3 ?   -1.3   0.0      0.41   1.8e+03     197     222 ..     430     455 ..     425     457 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.3
      FNIP_M  13 kklalaiivsLsesse...sefkqflleHfp 40 
                    a+ai+v+L+  s+   s+  ++  +H++
  KKY15629.1 196 PAYAIAIVVRLPSASKfanSRPGSRRASHAA 226
                 5567777777766665544444444444444 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 3e-05
      FNIP_M 123 kktnfFlstlltavLthhLaWvatvlpsdsskskslleke 162
                 +++nfFl tllta L +h  W+   +p +  + ++  +k+
  KKY15629.1 382 RDQNFFLYTLLTAFLGNHTDWLGELSPDSWYRRRHARQKK 421
                 578********************99998666554444444 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.41
      FNIP_M 197 aktvvvGkkeklvkkllsvLsYFiRc 222
                 ++tv+v +++  +++++ +Ls Fi +
  KKY15629.1 430 SRTVIVCADKMAARRMIFLLSSFIPS 455
                 79********9**********99965 PP

>> FNIP_C  Folliculin-interacting protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1     3e-05      0.13      17     101 ..     789     881 ..     770     890 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3e-05
      FNIP_C  17 eeanfgrsLlaglcdsYvpdfVLqGvtkseeklkevlskdlssave.ssvldepvaEa......vc..ivaDtdkwtvkvlssessklskskkl 101
                 + +   +s +ag +  Y  dfVLq+v  + ++l+++++++++s  + s+   e++ E+      vc  ++aDt ++++k l+ +++ ++ ++++
  KKY15629.1 789 SMTIENQSNVAGWLRAYHEDFVLQAVR-PYSELNSQIRASMMSEPTpSPPHLEETDESgrkwvdVCttLIADTRDFKIKRLTLKRQIQNVQAEN 881
                 333556788999**************9.79*********9998755133333444443233333333378888888888888887666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1058 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.51
# Mc/sec: 6225.76
//
Query:       KKY15630.1  [L=1240]
Description: putative dna repair protein rhp26 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-65  220.4   0.2    5.7e-65  219.3   0.2    1.5  1  SNF2_N          SNF2 family N-terminal domain
    3.5e-19   69.2   0.0    7.9e-18   64.8   0.0    2.6  2  Helicase_C      Helicase conserved C-terminal domain
    2.8e-06   27.4   0.1    1.8e-05   24.8   0.0    2.4  3  ResIII          Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.038   13.4   0.1      0.068   12.5   0.1    1.3  1  NMO             Nitronate monooxygenase
       0.04   14.1   0.2       0.18   11.9   0.0    2.2  3  TFIIF_beta      TFIIF, beta subunit HTH domain
       0.34    8.7   5.3       0.53    8.0   5.3    1.2  1  Nup88           Nuclear pore component


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.3   0.2   1.9e-68   5.7e-65      49     349 ..     418     729 ..     407     730 .. 0.92

  Alignments for each domain:
  == domain 1  score: 219.3 bits;  conditional E-value: 1.9e-68
                 HHHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............. RF
      SNF2_N  49 aeakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkk............. 134
                 +e+ +++ GGi  DemGLGKT+q++++++     ++++k        ++pt++v+Pa++++qW+ne++r++++ ++++l+ +g+ +             
  KKY15630.1 418 WELCSQQVGGIVGDEMGLGKTIQIISFLA---GLHHSKKI-------RKPTIVVCPATVMKQWVNEFHRWWPPFRVTILHSSGSGMinvrnestreenl 506
                 56678999*********************...66666664.......59**********************************999************* PP

                 ................-----------------EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SS CS
                 ................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 135 ................mkkkntkvapklladydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiq 217
                                 ++   +k+++++l++ +v++ttY+ l++ a        l  v w++ +lDEgh+++n ++ ++  +++L+t nr+il+GTP+q
  KKY15630.1 507 lnqmwnptsqtrvltsTQRAAEKMLKNTLTAGGVLVTTYSGLQTYA------PLLIPVTWEYAILDEGHKIRNPNTAITIYCKELRTPNRIILSGTPMQ 599
                 ***************977778999*******************999......89********************************************* PP

                 S-HHHHHHHHHHH-TTTT--HHHHHHHTHHHHH............HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 218 nsledlygLlkfLreepfgekqtfdkllqrpie............aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrll 304
                 n+l++l++L++f+ +  +g+  +f+++++ pi+            ++a k+++ L + +++++l r k dv ++lP+k+e+++f++l+k +r++Y+   
  KKY15630.1 600 NNLIELWSLFDFVFPMRLGTLVSFRNQFEIPIKqggyanasnlqvQTALKCAETLKDAISPYLLQRFKVDVAADLPKKSEQVLFCRLTKIQRQAYE--- 695
                 *******************************************999999***********************************************... PP

                 .................HHHHHH-HHH-HHHHHHHHHHHHH---X CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 305 evlrkkalakllkrseaalkssskskekilelllelrqacnhpql 349
                      ++la+  ++s +a k       ++l  +  lr++ nhp+l
  KKY15630.1 696 -----QFLASDDMKSIMAGKR------QVLFGVDILRKISNHPDL 729
                 .....4444444444444443......468889999999999987 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.16   4.8e+02      10      76 ..     445     526 ..     437     551 .. 0.66
   2 !   64.8   0.0   2.6e-21   7.9e-18       8     111 .]     760     864 ..     751     864 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.16
                 H....HHTTTTSEEEEEESSHHHHHHHHHHHHHT...TSTEEEESTT.......STHHHHH.HHHHHHH..TTSSSEEEESGGG CS
  Helicase_C  10 l....kleeeggkilifvntidrlekvklllekk...gikvavlhge.......lpqnere.eileqfn..kgesdvLiatdva 76 
                 l    +++++++ ++++++ + + + v+ ++  +    ++v++lh++        + + re   l+q+     +++vL +t+ a
  KKY15630.1 445 LaglhHSKKIRKPTIVVCPATVMKQWVNEFH--RwwpPFRVTILHSSgsgminvRNESTREeNLLNQMWnpTSQTRVLTSTQRA 526
                 2333588999999******999775455552..245789999999986666655333333313444442233444477777655 PP

  == domain 2  score: 64.8 bits;  conditional E-value: 2.6e-21
                 HHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHH CS
  Helicase_C   8 ellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlprnvtsyiqr 103
                 el   +  g+k+l+f++ + +l+   k+++++ g+k+ +++g++p + r+ ++++fn + + + +L++t+v++ G+++++++ Vi+fd+++n+++  q+
  KKY15630.1 760 EL--WRDTGHKTLLFAQHRIMLDIlEKFVRSSGGFKYRRMDGNTPIQARQNMVDEFNnDPDLHvFLLTTKVGGLGVNLTGADRVIIFDPDWNPSTDLQA 856
                 33..57899*************88555555555***********************97456666*********************************** PP

                 HTTSSSTT CS
  Helicase_C 104 iGRtgRag 111
                 + R++R g
  KKY15630.1 857 RERAWRLG 864
                 ******86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2       1.7   4.9e+03      92     132 ..      72     116 ..      54     129 .. 0.59
   2 !   24.8   0.0     6e-09   1.8e-05       4     169 ..     406     597 ..     404     599 .. 0.68
   3 ?   -3.5   0.0         3   8.9e+03      59      84 ..    1182    1208 ..    1179    1219 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.7
                 S-B--.......-SEEEEEHHHHHHTH............HHHTTT CS
      ResIII  92 dkkkakekdstnkkilvttiqsldadseee....eeeseellrdr 132
                 +  ++ ek st+++ lv++i +l+++ ++     ++++ +++ dr
  KKY15630.1  72 RDLQRLEKTSTHRDKLVAQIRKLKQRVSQPigvtQRAKLKADIDR 116
                 333335566666667777777777666444555544444444444 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 6e-09
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG................GEEEES CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke............igkkvs 90 
                 l +yQ++ ++ l e     ++  g++  + G GKT+ ++++ + l++++k++k  ++v   ++++q+ +ef ++ ++ +               +++++
  KKY15630.1 406 LFDYQKTGVQWLWELC--SQQVGGIVGDEMGLGKTIQIISFLAGLHHSKKIRKPTIVVCPATVMKQWVNEFHRWWPPFRVTilhssgsgminvRNESTR 502
                 6789999998888777..5999999999**********************998888888899*********6666654433455544433333222233 PP

                 SS-B--............-SEEEEEHHHHHHTH.......................HHHTTT-SEEEEETGGGTTS.TTTHHH.HHT---SEEEEEESS CS
      ResIII  91 gdkkka.....kekdstnkkilvttiqsldadseee...............eeeseellrdrfdviiiDEaHrlgakkswrei.lekfkeavllglTAT 168
                      +     ++ + t+   ++t++q++ +++ ++               + +   l + + ++ i DE H+++  ++   i  + ++   ++ l++T
  KKY15630.1 503 -----EenllnQMWNPTSQTRVLTSTQRAAEKMLKNtltaggvlvttysglQTYAPLLIPVTWEYAILDEGHKIRNPNTAITIyCKELRTPNRIILSGT 596
                 .....12333344444444444444444444442224666666666655555555778888888***********977666665666677888888898 PP

                 - CS
      ResIII 169 p 169
                 p
  KKY15630.1 597 P 597
                 8 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3
                  EEESSHHHHHHHH.HHGGGGTGG.... CS
      ResIII   59 flvprkslleqtl.eefkkflseayke 84  
                  +l ++ s++ q+l ++f++f +++++ 
  KKY15630.1 1182 LLTHGGSVYTQMLiDHFNRFCNTPQAT 1208
                  678889999999999999999888653 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.3e-05     0.068      47      97 ..      84     134 ..      74     151 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.3e-05
         NMO  47 aDrlakeirkvkaltdkPfgvnlflpkkdaadraekykkeleeaalelnie 97 
                  D+l ++irk+k+ +++P+gv  +++ k+  dr+e   kele+  ++++ +
  KKY15630.1  84 RDKLVAQIRKLKQRVSQPIGVTQRAKLKADIDRFEGQVKELENDLAQIQAR 134
                 49********************************99999999988888766 PP

>> TFIIF_beta  TFIIF, beta subunit HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       3.2   9.5e+03      24      34 ..      91     101 ..      90     102 .. 0.89
   2 ?   -3.2   0.0       3.3   9.8e+03      27      46 ..     520     539 ..     517     543 .. 0.75
   3 ?   11.9   0.0   6.1e-05      0.18      31      65 .]    1204    1240 .]    1196    1240 .] 0.89

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.2
  TFIIF_beta  24 lkdLkaetrqP 34 
                 +++Lk++++qP
  KKY15630.1  91 IRKLKQRVSQP 101
                 799*******9 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.3
  TFIIF_beta  27 LkaetrqPeayLkevLeeIA 46 
                 L  + r +e  Lk++L+  +
  KKY15630.1 520 LTSTQRAAEKMLKNTLTAGG 539
                 55667889999****98655 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 6.1e-05
  TFIIF_beta   31 trqPeayLkevLeeIAvlhr..sGpfknkweLkpeyk 65  
                  t q+ +  ke+L+ +A+l +  +G+  +kw Lk+e++
  KKY15630.1 1204 TPQATIEFKETLKVVAKLDKgpAGRGRGKWVLKDEFR 1240
                  67999999***********95558899********97 PP

>> Nup88  Nuclear pore component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   5.3   0.00018      0.53     578     681 ..      60     161 ..      45     167 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00018
       Nup88 578 eeerkslseraeklAekyeeikdkQeklvrrvkkvlkrlnsklpvlseaeremkkelekikeklkslknalkqvkkkldkqrkqiakskeeekksslel 676
                 + +r  l+++ e+  +++e  + + +klv +++k+ +r+   +p  +++  ++k  + +++ ++k+l+n l q++ ++d+   + +++  +++++s +l
  KKY15630.1  60 QASRLLLEQANERDLQRLEKTSTHRDKLVAQIRKLKQRVS--QPIGVTQRAKLKADIDRFEGQVKELENDLAQIQARIDERSVEEEHADGNNATHSGRL 156
                 456778899999**********************988875..688888888999*************************99999888888888888888 PP

       Nup88 677 sekqk 681
                 +++ +
  KKY15630.1 157 PHESQ 161
                 76654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1284  (0.0716158); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.03u 0.31s 00:00:01.34 Elapsed: 00:00:00.52
# Mc/sec: 7168.98
//
Query:       KKY15631.1  [L=745]
Description: putative protein kinase yak1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-52  176.1   0.1    4.5e-51  173.7   0.1    1.9  1  Pkinase         Protein kinase domain
    2.6e-23   82.6   0.0    5.8e-23   81.5   0.0    1.5  1  Pkinase_Tyr     Protein tyrosine kinase
    0.00037   20.5   2.4    0.00052   20.0   0.1    2.2  2  APH             Phosphotransferase enzyme family
      0.003   17.2   0.1      0.011   15.3   0.1    1.8  1  RIO1            RIO1 family
  ------ inclusion threshold ------
       0.26   10.9   2.5       0.32   10.5   0.2    2.1  2  Choline_kinase  Choline/ethanolamine kinase
       0.82    9.4   3.2       0.54   10.0   0.4    1.9  2  2OG-Fe_Oxy_2    2OG-Fe dioxygenase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.7   0.1   1.5e-54   4.5e-51       4     264 .]     208     530 ..     205     530 .. 0.88

  Alignments for each domain:
  == domain 1  score: 173.7 bits;  conditional E-value: 1.5e-54
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.......CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS. CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.......hpnivrlyevfeekdelylvleyveggeladllerkgs. 94 
                 l  lG+G+fG+V+k+ + +tg+ vAvK++k++ a  ++    ++E+++l  l+         +++rl+++f +k++l+lv+e+++ + l +l+++++  
  KKY15631.1 208 LDVLGQGTFGQVVKCQNLKTGEVVAVKVVKNRTAYFNQ---SMMEVSVLDLLNtkldkndDHHLLRLKDTFIHKQHLCLVFELLSVN-LYELIKQNQFr 302
                 678****************************9998766...5999999988775554555679**********************66.99999955555 PP

                 .--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE..EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHH CS
     Pkinase  95 .lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekge..lKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyel 190
                  ls + ++ +a+q+l+gl  l ++++iH+DlKpeNiL+++ +   +Ki+DFG a+  +++  + +++ ++ Y++PEvl + +ys+++D+WslG+i++el
  KKY15631.1 303 gLSTTLVRVFAQQLLNGLTLLNKARLIHCDLKPENILLKNLESpiIKIIDFGSACDERQT--VYTYIQSRFYRSPEVLLGLPYSSAIDMWSLGCIVVEL 399
                 7**************************************655577*********998885..69*********************************** PP

                 HHSS-STTTSSHHHHHHHHHHT.HHHHHHHCTSHH...HHHTTS....................................................... CS
     Pkinase 191 ltgkppfsgekgkekvekeldq.lekilkilgetkeklpeasei....................................................... 233
                 + g p+f+g+++ ++v+++++   +  +++l+  k++ +  +++                                                       
  KKY15631.1 400 FLGLPLFPGSSEYNQVARITEMlGMPPTWMLEMGKQSGEFFEKVhdefgrktyrlksmeqysrehntkeqpskkyfqattlpdiiksysmprknmkqae 498
                 ********77666655555555323334455555666666666688899999*********************************************** PP

                 .-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 .seeakdllkkllkkdpkkRltaeellqhpyl 264
                  ++ ++d+++ ll+ +p +R++ ++++ hp++
  KKY15631.1 499 iDRAFIDFVRGLLTINPLERWSPQQAKLHPFI 530
                 ******************************96 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.0   1.9e-26   5.8e-23       5     220 ..     209     420 ..     206     431 .. 0.81

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 1.9e-26
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHH.......HTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakim.......kklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk 95 
                  + lG+G+fG+Vv+++      k+ + VavK++k+++     ++ + e++++        k + +++++l    +++++l++v+e+++  +L + ++++
   KKY15631.1 209 DVLGQGTFGQVVKCQNL----KTGEVVAVKVVKNRTAYF--NQSMMEVSVLdllntklDKNDDHHLLRLKDTFIHKQHLCLVFELLSV-NLYELIKQN 299
                  68************999....88999******8877665..333444444411111113446789********************986.8******** PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE..TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHH CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse..nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsf 191
                  + + l+++ +  fa+q+ +G+  L++ +l+H dl   N+Ll++  + ++ki DfG a d  ++ +++       +  + +pE+l    ++s+ D+Ws 
   KKY15631.1 300 QFRGLSTTLVRVFAQQLLNGLTLLNKARLIHCDLKPENILLKNleSPIIKIIDFGSACDERQTVYTY-----IQSRFYRSPEVLLGLPYSSAIDMWSL 392
                  99****************************************75577********999983333332.....2234578******************* PP

                  HHHHHHHHTTSSGTTTTSHHHHHHHHHHT CS
  Pkinase_Tyr 192 GvllwEiftlgespypglkneevleklke 220
                  G ++ E+f  g   +pg ++ + +++++e
   KKY15631.1 393 GCIVVELFL-GLPLFPGSSEYNQVARITE 420
                  ********8.8777888777776666665 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   1.7e-07   0.00052     127     197 ..     274     357 ..     244     359 .. 0.74
   2 ?   -0.8   0.4      0.38   1.1e+03     105     161 ..     526     575 ..     491     607 .. 0.57

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.7e-07
                 HHHHCHHHCCCGCCTCCHHHHHHHH.........HHHHHHHH--S....SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 127 rqlesatarllaselldlleeleeq.........vlaalaallpg....elptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                  ++++++ +l+ ++l   l el +q         + + +a+ l++      +++l+H+Dl+p N+l++  + +++ +iDf+ a+
  KKY15631.1 274 TFIHKQHLCLVFELLSVNLYELIKQnqfrglsttLVRVFAQQLLNgltlLNKARLIHCDLKPENILLKNLESPIIKIIDFGSAC 357
                 556666666666666663444444447777777755555555555666699*****************88899999****9886 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.38
                 HHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH-- CS
         APH 105 lhqvdpaalpladflaqdlellrqlesatarllaselldlleeleeqvlaalaallp 161
                 lh +      ++ f+ + + +  +  s+  r++a+ +++ ++++e+ +  ++aa ++
  KKY15631.1 526 LHPF----ITQQKFTQPFVPPMNLKTSQS-RSPAPGVQQ-QQQAEA-LSKQRAAQAA 575
                 4444....445555544444444444442.444555555.333333.2222222222 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   3.8e-06     0.011      78     152 ..     278     356 ..     218     363 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.8e-06
                 EETTEEEEE--EETTEEGGBHHHCG.-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT...EEEE--GTTE CS
        RIO1  78 lkrhvlvmefigedgvaapklkdve.eeeeaeelyeevleemrklykeaglvHaDLSeyNvlvded...kvviIDvsQa 152
                  ++ +lv e+++ + +++ k ++ +  ++ + +++++ l +   l+++a+l+H+DL   N+l+++     + iID++ a
  KKY15631.1 278 KQHLCLVFELLSVNLYELIKQNQFRgLSTTLVRVFAQQLLNGLTLLNKARLIHCDLKPENILLKNLespIIKIIDFGSA 356
                 44558999***999999999999996577777777777777889999***************99863123557888766 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00011      0.32     143     171 ..     324     353 ..     234     360 .. 0.79
   2 ?   -0.6   0.1      0.27   8.1e+02      85     138 ..     445     494 ..     425     506 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00011
                     G-EEEE-S--SGGGEEE.-.CTTEEEE--G CS
  Choline_kinase 143 spvvfcHnDlqegNillnk.eekklvlIDF 171
                     ++  + H+Dl ++Nill++ e + + +IDF
      KKY15631.1 324 NKARLIHCDLKPENILLKNlESPIIKIIDF 353
                     446678**********9662566678***9 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.27
                     TTSSSS-HHHHHHHHHHHCCS.TT..ECHHGGCCHCCCTHHHHHHHHHTHHHHH CS
  Choline_kinase  85 seskespslwktmqkwllnkeaqtkakkekkkkqlklinledlekeleklekll 138
                     +e  +++   k m+++    + + ++k++++kk ++  +l d+ k  ++ +k +
      KKY15631.1 445 DEFGRKTYRLKSMEQY----SREHNTKEQPSKKYFQATTLPDIIKSYSMPRKNM 494
                     5566677778999999....7778888888888888888888877777666665 PP

>> 2OG-Fe_Oxy_2  2OG-Fe dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2      0.51   1.5e+03      17      44 ..      37      67 ..      23      79 .. 0.62
   2 ?   10.0   0.4   0.00018      0.54       8     103 ..     443     534 ..     438     541 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.51
                  EEEE-BEEE..EEETTT.EEEE-----EEEE CS
  2OG-Fe_Oxy_2 17 yRkrrysrf..eldedt.slerlphqpfaqs 44
                  +R  + +r+  +++++t + e  p+q + q+
    KKY15631.1 37 TRQNSTARYtpQYAQQTqASELPPDQYYQQP 67
                  7788888884435555534444445555554 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00018
                   EE--S-TTSEEEE-BEEEEEETTTEEEE-----EEEESSTT-SS-CEEE---B--HHHHTSHHHHHHHHHHHHHHHCCS--G...EEEEEEEEEEET CS
  2OG-Fe_Oxy_2   8 plDpylkdgyRkrrysrfeldedtslerlphqpfaqskeynpldggieReFeeledellqnpllqallaakaqlfeqleskqr..weievhqiRiea 102
                   ++D++  + yR +++ +++ + +   +++p ++++q ++      +i  ++   +++++q ++ +a++ +   l++    ++    ++++h + +++
    KKY15631.1 443 VHDEFGRKTYRLKSMEQYSREHN--TKEQPSKKYFQATTL----PDIIKSYSMPRKNMKQAEIDRAFIDFVRGLLTINPLERWspQQAKLHPFITQQ 533
                   57*****9**********66555..999********6665....88999999999999999999999998877765544443344889999998887 PP

                   T CS
  2OG-Fe_Oxy_2 103 t 103
                   +
    KKY15631.1 534 K 534
                   6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (745 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1392  (0.0776396); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.49
# Mc/sec: 4599.75
//
Query:       KKY15632.1  [L=577]
Description: putative ccch zinc finger domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        4.2    8.3  96.0      4e+02    1.9  30.6    5.0  3  Nucleoporin_FG  Nucleoporin FG repeat region


Domain annotation for each model (and alignments):
>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2  29.3       0.1   1.9e+03       3      80 ..     170     257 ..     155     261 .. 0.54
   2 ?  -15.7  52.6         1   1.8e+04       3      75 ..     228     311 ..     203     353 .. 0.53
   3 ?    1.9  30.6     0.022     4e+02       4      83 ..     347     432 ..     325     460 .. 0.56

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.1
  Nucleoporin_FG   3 FG......aaatstsgglFGststtatstgglFGasstatatasgg.glfgat.sqtaasgglFGstnattqtta.......tgglFGstaat 80 
                     FG      +++      + Gs++ +++st ++FG+ s    ++s g  +fg++ + +  ++++FG++++ttq++        +   FG++a+ 
      KKY15632.1 170 FGsgsladNNN-----ATAGSNPFAKPSTPSAFGQPSVGFGQPSFGaPAFGKPsQPSGLGQPAFGQPSTTTQPAFgqpsnvsQPTAFGQPAQP 257
                     44422222222.....33333333344445666666666666666666666664444445667777777766643444444444566666655 PP

  == domain 2  score: -15.7 bits;  conditional E-value: 1
  Nucleoporin_FG   3 FGaaatstsgglFGststtatstgglFGasstatatasgg.g........lfgatsqtaasgglFGstnattqtta.......tgglFG 75 
                     FG ++++t++ +FG++s+   s+ ++FG  ++a+ ++ +g g        +fg++ qt++++  FG++++++   +         + FG
      KKY15632.1 228 FG-QPSTTTQPAFGQPSNV--SQPTAFG--QPAQPQQITGfGqpsgfgkpAFGQPPQTSTGQAGFGQPAQSSGFGQpsfgapsAPSAFG 311
                     66.6666666666666666..5666666..23333332221112222222333334444444444444444333222222222222222 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.022
  Nucleoporin_FG   4 GaaatstsgglFGststtatstgglFG..asstatatasgg.glfgat.......sqtaasgglFGstnattqttatgglFGstaataqq 83 
                     G +++ +s + FG +s+ ++ ++ +FG  + +++t++++++ + fg++       ++++++ + F +++a ++     ++FG++a+++++
      KKY15632.1 347 G-QPAGSSIKSFGRPSQPTSFGQPAFGqpSPAPQTQSPAAAaNPFGQPaaagnpfAAKPSTASPFSAPSAPSS---APSIFGQQAQSSTT 432
                     2.44444446666666666666667774422233333333334666544444444444444444444444333...56777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.54
# Mc/sec: 3244.46
//
Query:       KKY15633.1  [L=116]
Description: putative 40s ribosomal protein s20 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-27   95.1   0.5    2.7e-27   94.9   0.5    1.1  1  Ribosomal_S10  Ribosomal protein S10p/S20e


Domain annotation for each model (and alignments):
>> Ribosomal_S10  Ribosomal protein S10p/S20e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   0.5   1.5e-31   2.7e-27       1      98 []      20     113 ..      20     113 .. 0.96

  Alignments for each domain:
  == domain 1  score: 94.9 bits;  conditional E-value: 1.5e-31
                    EEEEEESSHHHHHHHHHHHHHHTTSSS-EE---EEEEEEEEEEEEE--SS--.S--EEEEEEEEEEEEEEEE.E-HHHHHHHS-...S---SS-EE CS
  Ribosomal_S10   1 rirlkSydsklLekavkkivraakelgikvkgpvplPtkrkrvtvlksphvd.kksreqfeirthkRlidisdatketidtllkllqlnlpegVsv 95 
                    ri+l+S++ ++Lek+++++++ ak ++++vkgpv+lPtk+++vt++k+p+++ +k+++ +e+r+hkRlid+ +a+ e++++++     n+++gV+v
     KKY15633.1  20 RITLTSRKVQSLEKVCTELIDRAKTKNLRVKGPVRLPTKTLKVTTRKTPCGEgSKTWDMYEMRIHKRLIDL-NAPTEVVKQIII----NIEAGVEV 110
                    8**********************************************************************.688999999987....899***** PP

                    EEE CS
  Ribosomal_S10  96 evk 98 
                    ev+
     KKY15633.1 111 EVT 113
                    996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 795.62
//
Query:       KKY15634.1  [L=1058]
Description: putative calcium calmodulin-dependent protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.7e-67  225.1   0.0    1.6e-66  224.4   0.0    1.3  1  Pkinase         Protein kinase domain
    1.3e-23   83.7   0.0      2e-23   83.0   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase
    2.3e-08   33.6   0.2      2e-07   30.6   0.1    2.5  2  CUE             CUE domain
    3.4e-06   26.6   0.0    6.5e-06   25.7   0.0    1.4  1  Kinase-like     Kinase-like
    8.3e-05   22.0   0.0    0.00016   21.1   0.0    1.4  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0005   19.0   0.0    0.00089   18.1   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase
     0.0015   18.5   0.0     0.0035   17.3   0.0    1.6  1  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.4   0.0   6.2e-70   1.6e-66       1     264 []     648     925 ..     648     925 .. 0.92

  Alignments for each domain:
  == domain 1  score: 224.4 bits;  conditional E-value: 6.2e-70
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.........HHHHHHHHHHHHHS..CTTB--EEEEEEE......SSEEEEEEE--TT CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.........kkvlrEikilkklk..hpnivrlyevfee......kdelylvleyveg 82 
                 y++ ++lG Gs+++V ++v+ +tg+ +A K+i+k+ +  +++           v++Ei++lk+++  h+ni++l+++fe+      ++ +ylv++++ g
  KKY15634.1 648 YKTGKTLGAGSYSVVKECVHIDTGRYYAAKVINKRLMAGREHmvrtgllpcLLVRNEIAVLKRVSmgHQNILTLVDYFETmnnrmyTTAVYLVTDLALG 746
                 78899*******************************999999999999998899**********99**************9999999999********* PP

                 EBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE...EEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHHTTSCBSH CS
     Pkinase  83 geladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekge...lKitDFGlakelesssk..ltsfvgtseYlAPEvlkeneysk 176
                 gel+d++ rkgs+ e++a ++++ +l++++ylH++gi+HrDlKpeN+L+ + ++   l i+DFGl++ +++++   lt+ +gt+ Y+APE+ k+++++k
  KKY15634.1 747 GELFDRICRKGSYYESDAADLIRATLSAVAYLHDHGIVHRDLKPENLLFRTPEDnadLLIADFGLSRIMDEEQFhvLTTTCGTPGYMAPEIFKKTGHGK 845
                 *************************************************95333467**************99999*********************** PP

                 HHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 177 kvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 +vD+W++Gvi y ll+g +pf  +++ e+++++l          + +   ++ ++ +s +a+d++k++l+ +p++R+t +e+lqhp++
  KKY15634.1 846 PVDIWAIGVITYFLLCGYTPFDRDSNLEEMQAILAA--------DYSFTPIEYWRGVSMTARDFIKRCLTINPTQRMTSHEALQHPWI 925
                 **********************44443333333333........345567899**********************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.0   7.7e-27     2e-23       2     254 ..     649     918 ..     648     922 .. 0.84

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 7.7e-27
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHH......HHHHHHHTS..-BTTB--EEEEEE..SSSS......EEEEEE-- CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeell......eeakimkkl..khpnivkllgvct..keep......llivteyv 83 
                  ++gk+lG+G+++ V e+   ++ +    kV+ K l ++ ++  ++ ll      +e++++k++   h+ni+ l+      +  +      +++vt+++
   KKY15634.1 649 KTGKTLGAGSYSVVKECVHIDTGRYYAAKVINKRLMAGREHMVRTGLLpcllvrNEIAVLKRVsmGHQNILTLVDYFEtmN--NrmyttaVYLVTDLA 744
                  5789**************99999999*********88888877665533333337******99778********9998542..33456669******* PP

                  TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE...TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHH CS
  Pkinase_Tyr  84 kgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse...nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslk 178
                   gG+L + + +k   +   +d  +++    ++++yL+++ +vHrdl   N L ++   n    i+DfGL+r + ++++ ++ +++     +mapE++k
   KKY15634.1 745 LGGELFDRICRK--GSYYESDAADLIRATLSAVAYLHDHGIVHRDLKPENLLFRTpedNADLLIADFGLSRIM-DEEQFHVLTTTCGTPGYMAPEIFK 839
                  **********98..8999999********************************976658899*********87.7777777777888889******** PP

                  HSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH.HTTEES-BBTT...SBHHHHHHHHHHT-SSGGGS--HHH CS
  Pkinase_Tyr 179 ekkftsksDvWsfGvllwEiftlgespypglkneevlekl.kegkrlekpek...cpeelyelmkkcweedpeeRptfse 254
                  ++   +  D+W+ Gv+++ +++ g +p+ + +n e ++++  +++  +  e+   ++ +  +++k+c++ +p++R t +e
   KKY15634.1 840 KTGHGKPVDIWAIGVITYFLLC-GYTPFDRDSNLEEMQAIlAADYSFTPIEYwrgVSMTARDFIKRCLTINPTQRMTSHE 918
                  ******************9999.*****99977666666647777765555411156788899************98665 PP

>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.1   7.9e-11     2e-07       3      40 ..     350     387 ..     349     387 .. 0.97
   2 ?   -0.6   0.0      0.44   1.1e+03      18      29 ..     545     556 ..     544     557 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 7.9e-11
                 HHHHHHHHHSTTS-HHHHHHHHHHCTTTHHHHHHHHHH CS
         CUE   3 qmletLkemFPdldeevIravLrasngnvEatinaLLe 40 
                 ++++tL e+FPd ++ ++ + L  ++++vE+++ aLLe
  KKY15634.1 350 EQVSTLLELFPDATPAYLLRLLDHYKNDVERVTAALLE 387
                 89***********************************8 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.44
                 HHHHHHHHHCTT CS
         CUE  18 evIravLrasng 29 
                 ++I+++L++ +g
  KKY15634.1 545 GQIKRDLSQATG 556
                 79*******998 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   2.5e-09   6.5e-06     146     256 ..     769     872 ..     711     890 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 2.5e-09
  Kinase-like 146 rlllTlqlirlaanLqakglvhgkftvdnllld...ekgglmlggft..aLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWql 236
                  r+ l       +a+L+++g+vh +++++nll+     +  l + +f+   ++   +  vl +++   g+  pE++ +              ++d W++
   KKY15634.1 769 RATL-----SAVAYLHDHGIVHRDLKPENLLFRtpeDNADLLIADFGlsRIMDEEQFHVLTTTCgtPGYMAPEIFKKT---------GHGKPVDIWAI 852
                  3333.....459********************63225789****9962144555555566777777899999999884.........44679****** PP

  Kinase-like 237 GlviyriwclklPltlatee 256
                  G+  y++ c + P++ + ++
   KKY15634.1 853 GVITYFLLCGYTPFDRDSNL 872
                  ***************98765 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   6.1e-08   0.00016      23     167 ..     661     810 ..     649     819 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 6.1e-08
         Kdo  23 vvaekvnaalrkyyrggllgk.ls..kdlyrfk..lgrtravrEfrllkrLeeagvavpkpvaagavkvgle.yrAlllterlegaqdLedllakwael 115
                 vv+e v+ +  +yy  + ++k l+  ++++ ++  l+ + +++E+++lkr      ++++ v + +   +    +A+ l+ +l+   +L d + +  ++
  KKY15634.1 661 VVKECVHIDTGRYYAAKVINKrLMagREHMVRTglLPCLLVRNEIAVLKRVSMGHQNILTLVDYFETMNNRMyTTAVYLVTDLALGGELFDRICRKGSY 759
                 555555666656665555543222235554444467777888999999999999999999997666665555378888999999888887766665779 PP

         Kdo 116 aeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                  e+  + l++a+  ++a lh+ g+ H+dl + n+l+++ e ++a + + D+ 
  KKY15634.1 760 YESDAADLIRATLSAVAYLHDHGIVHRDLKPENLLFRTPE-DNADLLIADFG 810
                 999999*********************************8.99999999996 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.5e-07   0.00089     318     392 ..     774     844 ..     761     851 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3.5e-07
  Pkinase_fungal 318 ghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHs 392
                     +   L+ + gi+HrD   +N+l+  +  e++   l++D+ l   +++ ++ ++  +  GT+ +ma e+ k++ H 
      KKY15634.1 774 AVAYLH-DHGIVHRDLKPENLLFRTP--EDNADLLIADFGLSRIMDE-EQFHVLTTTCGTPGYMAPEIFKKTGHG 844
                     556799.*****************55..556788999*****99997.6666789***************98895 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.4e-06    0.0035     153     200 ..     768     816 ..     744     819 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.4e-06
                 HHHHHHH--SSS-EEEE-SS-SGGGEEEC...TTEEEEE---TT-EEEE CS
         APH 153 laalaallpgelptvllHgDlhpgNllvd.pddgrvtGviDfedaglgp 200
                 ++a +  ++   +++++H+Dl+p Nll++ p+d+    + Df+++++++
  KKY15634.1 768 IRATLSAVAYLHDHGIVHRDLKPENLLFRtPEDNADLLIADFGLSRIMD 816
                 33333333337899****************5555554599**9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1058 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.50
# Mc/sec: 6404.57
//
Query:       KKY15635.1  [L=2264]
Description: putative dna polymerase epsilon catalytic subunit a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     1e-154  514.9   0.0   1.5e-154  514.4   0.0    1.3  1  DUF1744         Domain of unknown function (DUF1744)
    2.5e-82  276.7   0.3    4.2e-82  276.0   0.3    1.4  1  DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
    2.5e-15   56.2   0.3      5e-13   48.6   0.5    3.4  2  DNA_pol_B       DNA polymerase family B
    2.4e-08   33.9   0.1    9.4e-08   32.0   0.1    1.9  1  DNA_pol_B_exo2  Predicted 3'-5' exonuclease related to the ex
    9.8e-05   22.4   0.0    0.00036   20.6   0.0    2.0  1  RNase_H_2       RNase_H superfamily


Domain annotation for each model (and alignments):
>> DUF1744  Domain of unknown function (DUF1744)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  514.4   0.0  4.3e-158  1.5e-154       2     400 ..    1519    1909 ..    1518    1910 .. 0.97

  Alignments for each domain:
  == domain 1  score: 514.4 bits;  conditional E-value: 4.3e-158
     DUF1744    2 eklykeelek..keekeekkeelieypeklkfeveyvkdekkalkalsralkklkeeksgptllvlqspkelkkleskipalsefPvvklpsnkaes 96  
                  +kly +++e+  +e + e ++++++y++k+kf++++v++++ka+ ++ + +kk+++++ +p +lvlqs+++ +++ +++p+l+e+P++ l+s+ +++
  KKY15635.1 1519 DKLYVDQIERkmEEGAGEGWQDVFQYQDKIKFKTTQVTTKRKAHLEIGDLVKKWRNDEVKPLMLVLQSTQR-RQVVHDVPILKEMPILPLASELTDT 1614
                  7899999998667788899***************************************************9.************************* PP

     DUF1744   97 slpalgWqsvvakrlvehylklgswlaelielaryadvPlgnlesddllfliDiffaRrLkksnvvLWwsesprPDlGGlekDdklealslleeles 193 
                  +lp+lgWqs++akr+v+hyl+lgsw+++l+ lary+d+P++nle+dd++fl+D+++aRrL++snvvLWws++prPD++G+ekDd   ++ +le++e+
  KKY15635.1 1615 HLPPLGWQSYLAKRIVSHYLTLGSWISHLTGLARYGDIPICNLEHDDAKFLVDVAYARRLQRSNVVLWWSSNPRPDHAGHEKDD---VIGPLETVEM 1708
                  ***********************************************************************************9...7799****** PP

     DUF1744  194 peinnpgaYssvcveleirnLavntilqsalinelEgssssvafddasseeldeyekgeaessssldesalssaafrvLrslvkswlddalkgnkla 290 
                  p innpga+ svcvele+rnL++ntil+s+linelEgs+ s+af++a++   d     + ++ +  +++a+++a + vLr++vksw+++a+kgn +a
  KKY15635.1 1709 PAINNPGAFASVCVELEVRNLTINTILTSSLINELEGSD-SIAFNPAEQG--DG---PSDGTGVLSSDKAFANAGVMVLRDMVKSWWAEACKGNAMA 1799
                  *************************************97.5999996643..33...345789999******************************* PP

     DUF1744  291 dllvqhlvrWvespsslLyDpaLrrlvqnlmkKvflqLlaefkrlgskvvyAdfnkillkTsKksvenayaYveyilkairskelFkflelkikkyW 387 
                  d++vqhlvrWvespss+LyD++L ++vq++++K+f+qL+++fkr+gs+vvyA+++++ll+T+K++v+nayaY++yilk+i++k+lF+fl+l+ik+yW
  KKY15635.1 1800 DVMVQHLVRWVESPSSFLYDRSLCYYVQMMSRKAFQQLMTDFKRVGSHVVYASPSRLLLQTTKTEVGNAYAYSQYILKSIQQKPLFHFLDLEIKEYW 1896
                  ************************************************************************************************* PP

     DUF1744  388 dlLlwmDeaNygG 400 
                  d+L+w+D++NygG
  KKY15635.1 1897 DYLVWYDPHNYGG 1909
                  ************* PP

>> DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.0   0.3   1.2e-85   4.2e-82       4     337 .]     100     438 ..      97     438 .. 0.99

  Alignments for each domain:
  == domain 1  score: 276.0 bits;  conditional E-value: 1.2e-85
                     TTSEEEEEEEE---EEEEEESSCGGHHHHHHHHHHHCCTTCCCEEEEEEEECCCCEECCTSSCCHHCEEEEEESSTCHHHHHHHHHHH....... CS
  DNA_pol_B_exo1   4 egksvcvnvfgfkpyfYceapdgkeleevkeelkelyeelskkvtkivkvelvlkkslygyekkpvpylkvsvsnpnelkkirkelsp....... 91 
                     +++ +++ +++++pyf++++++gke+ ev+e+ k+++e+l k+v++++k++l+++++l+gy ++   +lk+ + n+ +l+++rk ++p       
      KKY15635.1 100 DDGDNFKATVEHDPYFLVAVRKGKET-EVEEWSKRMFEGLVKSVSRVDKEDLQMPNHLFGYRRT---FLKLAFVNVPDLLSVRKVIMPiaeknks 190
                     788999*******************9.*************************************...**************************** PP

                     .....................................CCCCCCCCSSS--HHHHHHHHCTS-TTCEEEEETEEEEGCC--C-.SEEEEEETTTSC CS
  DNA_pol_B_exo1  92 .....................................leeivdvyeydvdylerflidnkivgfgwysvkkylvraegkisncdveidcdvddli 149
                                                          ++ ivd++eydv+y++r+ id++++ ++wy+v+         +++  ++++c  ++l+
      KKY15635.1 191 slsamdtyaevatanagfdifdeaqydtkrsngildaSDFIVDIREYDVPYHVRVTIDKDLRIGKWYEVE---------AKHGVISLSCIEERLQ 276
                     *************************************999******************************.........**************** PP

                     EETTTCCS-EEEEEEEEEETEETTSEETTTT..--EEEEEEEECCTC.SS.SEEEEEEECCCTSS----EE--SSTCSTTE.EEEEESSHHHHHH CS
  DNA_pol_B_exo1 150 akpkesepplrvlsFDIeckskkgkfpdaensedpiiqIscvldglgekepearklftlrecaseeeedfeltpkpeypgv.kvlefdsEkelLq 243
                     +      ++++vl+FDIe++++++kfpda +  d+i++Is+++dglg       +l+t+re++se++ dfe+tpkpey+g+  ++++++Ek++++
      KKY15635.1 277 R------ADPVVLAFDIETTKLPLKFPDAVI--DQIMMISYMIDGLG-------FLITNREIVSEDISDFEYTPKPEYEGPfLIFNEPDEKAVIE 356
                     *......************************..**************.......***************************************** PP

                     HHHHHHHHH--SEEEESSTTTTHHHHHHHHHHHCCTCCHCG.SCCSCTCEECCCCESEEEEEECEEEETTSEEEEHHHHHHHHSSSS..G-SHHH CS
  DNA_pol_B_exo1 244 aflefikqydPdvitgYNidnFDlpYilnRakelykvklsklgrlnkggrskvseigfskqarekvkisgrihlDlyrvvkrklklp..sYkLna 336
                     +f++++k+ +P+vi +YN+d+FD+p++++Ra+                g+ +  eigf+k++++++++++++h+D++ +v+r+++lp  s  L+a
      KKY15635.1 357 RFFSHVKEARPTVIATYNGDFFDWPFVEARAS--------------VLGIDMYAEIGFGKNSEDIYQSDYCVHMDCFSWVNRDSYLPqgSRGLKA 437
                     ********************************..............9**********************************************99 PP

                     H CS
  DNA_pol_B_exo1 337 v 337
                     v
      KKY15635.1 438 V 438
                     8 PP

>> DNA_pol_B  DNA polymerase family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.16   5.6e+02       6      57 ..     503     562 ..     499     570 .. 0.73
   2 !   48.6   0.5   1.4e-16     5e-13      62     456 ..     633    1153 ..     628    1155 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.16
                 HHHS-HHHHHHHHHHHHHHHTTBE-B-----.--SS...........-S----BE----EEE CS
   DNA_pol_B   6 vledgqqirveslLlrlakeegfilpdrtekkgkeee..........gYqGatVlePkkgly 57 
                 +l +g  +  e+lL+ +a +++++lp+++++   +e+          +Y G+ V + + g++
  KKY15635.1 503 TLRKGTGTLCEMLLMVQAYQKEIVLPNKHKD--PREAfweghlleseTYVGGHVESIEAGVF 562
                 67889999999***************64444..33334567777775588888866666666 PP

  == domain 2  score: 48.6 bits;  conditional E-value: 1.4e-16
                  EEEEETTHHHHHHHHTT-STTTCE-HCCHCC.T--BTT.......................................................TEEE CS
   DNA_pol_B   62 lvlDFaSLYPsiiqahNlcyttlvaseeeak.eleaed....................................................eylevev 105 
                    lD aS+YP+i+  + l +  +v++ + a+ + +                                                       + +   v
  KKY15635.1  633 YHLDVASMYPNIMTTNRLQPDSMVQESDCAAcDFNRPGktcdrrlpwawrgeflpakrdeynmirraamnetfpgktkkspprtwddlslDEQAAAV 729 
                  5688888888888888888888888888777644444457888888888888888888755555555555555555555555555555553333333 PP

                  -TCC-EEE-..................TTS---HHHHHHHHHHHHHHHHHHHHHCS--H......................HHHHHHHHHHHHHHHH CS
   DNA_pol_B  106 eprlvefvk..................ksvregllpklLkdllakRkaikkelkeekde......................fekalldkqQlalKvt 162 
                  ++rl+e+ k                   ++++  + + ++d+ ++R   k + k                           ++ +l+d+ Qla Kv+
  KKY15635.1  730 KKRLQEYSKkiyhkihdartiereaiiCQRENPFYVNTVRDFRDRRYDFKGKQK----VwkgktealkssgasaveveeakKMVVLFDSLQLAHKVI 822 
                  333333333344444444444444444445555555556666666655555544....03333557888888888888876778899********** PP

                  HHHHHHHHTSTTSTT--HHHHHHHHHHHHHHHHHHHHHHHHT......SSG.........GGT-SS..........T-EEEEEBSSEEEEE-...S- CS
   DNA_pol_B  163 aNsvYGftGvansrlpclalAasvTtiGRemLektkelvekk...aellsk.........llalpeea....eee.klkviYGDTDSvfiel...kv 239 
                   Ns+YG++  + sr +++++A     +G +++++++elve+        +           + +pe++    ++  k+ v Y     ++++    + 
  KKY15635.1  823 LNSFYGYVMRKGSRWYSMEMAGVTCLTGAHIIQMARELVERIgrpL---ELdtdgiwcmlPATFPENVaftlKNGkKMAVSYP---CIMLNHlvhSR 913 
                  ****************************************885432...3223466554444455544444423358888884...78887633322 PP

                  SSHHHHHHHHHHHHHHHHT.TSTTT--EEEEEEEEEEEEEE........TTEEEEEEEEESSTTSE.EEEESSGGGSTTS-HHHHHHHHHHHHHHSS CS
   DNA_pol_B  240 kdveellkigkelaeevseklfkkplklefekvykkllLis........KKkYaglkvektskank.lliKGvdlvRrdncklvkevikkvlelllk 327 
                   + ++  ++ +    + ++ +  + +  e++  yk ++L +        KK+Ya + ++     ++  + KG ++ Rr+  kl+k   +++ +  l+
  KKY15635.1  914 FTNHQYQTLTDPKTFKYET-TSDNSIFFEVDGPYKAMILPTskeedknlKKRYAVFNHD-----GSlAELKGFEVKRRGELKLIKIFQTQIFKFFLE 1004
                  4555555555544444444.55778**************65555555669*****9999.....54479**************************** PP

                  S.......S-HHHHHHHHHHHHHHHHHHHHTT-S-GGGG-EEEEESS.CCCSSGCCSHHHHHHHHHHHHCSS-..--TTCEEEEEEBETSS...... CS
   DNA_pol_B  328 det...eersleeglealksilkdvleeleenkvplekfvlskelskepenyksknlphlevakrlkkrneea..pevgdrisYvivekkkev.... 415 
                    t   +   + ++ +   ++l+   + l++++  ++  + +k++sk+ e+y s++   ++ akrl+   +e      g   +Y+i +k ++     
  KKY15635.1 1005 GTTlaeTYGAVAKVANRWLDVLHSHGSTLADEE-LIDLICENKSMSKTLEEYGSQKSTSITTAKRLADFLGEGmiKDKGLNCKYIISSKPRNSpvte 1100
                  *77443334444444445555544445555554.5777788999********999999********9987555224566679999999988768888 PP

                  ................SS-GGGTEEEHHHHHHCCSEB-HHHHHHTTHHHHHHHH CS
   DNA_pol_B  416 .............kkknllaseraedpeyvleknlpidieyYlsqllkevarll 456 
                               +k+  l++ ++edp  +   +  +d +yYl++l + + +l+
  KKY15635.1 1101 raipvaifsaeetIKRFFLKKWLKEDPGDMD-LRTVLDWDYYLERLGSVIQKLI 1153
                  8888888777766556666666777774433.3456889999999988888776 PP

>> DNA_pol_B_exo2  Predicted 3'-5' exonuclease related to the exonuclease domain of PolB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.1   2.6e-11   9.4e-08      34     175 ..     348     486 ..     344     487 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 2.6e-11
  DNA_pol_B_exo2  34 essekelikkffegvekkkpqlV.sfngrgfDlpvleyralkhgvsapkyfdegdedrekkwnnylsrystrhlDLmdlls..eygaranakLd. 124
                     e +ek++i++ff++v++++p+++ ++ng  fD p +e ra + g+ + + +  g++      + y+s y   h+D    +   +y ++ +  L+ 
      KKY15635.1 348 EPDEKAVIERFFSHVKEARPTVIaTYNGDFFDWPFVEARASVLGIDMYAEIGFGKN----SEDIYQSDYC-VHMDCFSWVNrdSYLPQGSRGLKa 437
                     4579****************98758***************9999876555555552....2233444443.477877777533576666666661 PP

  DNA_pol_B_exo2 125 .elakllglPGKlgvdGskVaelyqegklkeireYcetDvlnTYlvylrlel 175
                      ++akl   P  l+    + ++ y++++ ++++eY  +D++ TY +y+++++
      KKY15635.1 438 vTVAKLGYDPDELD---PELMTPYASERPQTLAEYSVSDAVATYYLYMKYVH 486
                     14566655565555...57899***************************975 PP

>> RNase_H_2  RNase_H superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0     1e-07   0.00036      38     119 ..     346     448 ..     337     484 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1e-07
   RNase_H_2  38 aeepeeekailelflellekk.kalvtfngksFDvpflkrlf....kkyklde................eefrhiDLlkelrkkkl....esysLksve 111
                  +ep+e++ i+++f ++ e + + + t+ng  FD+pf++ ++         d                 +   h+D + ++++  +    ++ +Lk+v 
  KKY15635.1 346 FNEPDEKAVIERFFSHVKEARpTVIATYNGDFFDWPFVEARAsvlgI----DMyaeigfgknsediyqsDYCVHMDCFSWVNRDSYlpqgSR-GLKAVT 439
                 568999999***99665555537799****************55553....44445577778877776666799999999999888899555.899887 PP

   RNase_H_2 112 ke.lgierr 119
                  + lg++ +
  KKY15635.1 440 VAkLGYDPD 448
                 665777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.24u 0.32s 00:00:01.56 Elapsed: 00:00:00.56
# Mc/sec: 12078.69
//
Query:       KKY15636.1  [L=118]
Description: hypothetical protein UCRPC4_g06223 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-07   29.4   0.0      7e-07   29.0   0.0    1.2  1  DUF3767   Protein of unknown function (DUF3767)


Domain annotation for each model (and alignments):
>> DUF3767  Protein of unknown function (DUF3767)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   3.9e-11     7e-07      10      47 ..      80     117 ..      73     118 .] 0.91

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 3.9e-11
     DUF3767  10 tisledfsklvsiPCaRdslltGigagavvGglrfvlk 47 
                 t+ ++d++++++  C+Rd+ll+Gigag +vGgl+++lk
  KKY15636.1  80 TFGKTDIERFYKGGCSRDALLVGIGAGGSVGGLMWILK 117
                 56789******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.31s 00:00:00.75 Elapsed: 00:00:00.48
# Mc/sec: 744.81
//
Query:       KKY15637.1  [L=259]
Description: hypothetical protein UCRPC4_g06224 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1238  (0.0690501); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1786.45
//
Query:       KKY15644.1  [L=854]
Description: putative ph domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-05   25.2   0.1    4.1e-05   24.0   0.1    1.7  1  PH        PH domain
  ------ inclusion threshold ------
      0.094   10.7   0.2       0.13   10.2   0.2    1.1  1  Prominin  Prominin


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   4.6e-09   4.1e-05       2     103 ..     422     523 ..     421     525 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 4.6e-09
                 EEEEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSS...TEEEEEEESSHHHHHHHH CS
          PH   2 vkeGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverng...srtyllqasseeerkeWi 97 
                 v++G+L +k++  k ++   w+vL+ + l  +k+ ++    +p +s+ l + +  ++  +e +   ++f+l+  ++++    ++++++a+s e + +W 
  KKY15644.1 422 VRSGMLERKSKYLK-NYTPGWYVLSPTHLHEFKSADRIATQQPIMSLYLPEQKLGSH--SEPMSSSHKFMLKGRQTGSmhrGHSWIFRAESYETMMAWF 517
                 689**********9.********************7777777777777777777776..8899********77766656556***************** PP

                 HHHHHH CS
          PH  98 kaiqsa 103
                 ++i+++
  KKY15644.1 518 NDIKEL 523
                 ***986 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   1.4e-05      0.13     644     705 ..     207     282 ..     172     290 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 1.4e-05
    Prominin 644 k..............knlkqslkneaqdlraiqqelvlplessvkklkksvkkldeensdlqesikkllaaverae 705
                 +              ++ +++  ne ++ +++++e +l+l+ + ++l++++k++++ + d+++s+++ ++  ++a 
  KKY15644.1 207 SfmsngglgdalhilRDFHKNAVNESNKAKELENEVILQLTGLRSDLQQKIKEIKSLSGDFKNSVDRETEGTRKAV 282
                 45555566666666678899999*****************************************998766655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.46
# Mc/sec: 5593.36
//
Query:       KKY15645.1  [L=449]
Description: putative rnp domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-46  156.1   0.0      3e-16   59.0   0.0    3.5  3  RRM_1           RNA recognition motif. (a.k.a. RRM, RBD, or R
    0.00036   20.5   0.1       0.86    9.7   0.0    3.4  3  RRM_3           RNA binding motif
     0.0014   19.3  15.4     0.0014   19.3  15.4    4.7  4  GRP             Glycine rich protein family
  ------ inclusion threshold ------
      0.012   15.7   0.0         15    5.7   0.0    3.3  3  Limkain-b1      Limkain b1
      0.033   13.7   0.0        5.4    6.5   0.0    2.5  2  ATP-grasp_2     ATP-grasp domain
      0.089   12.4   0.0         10    5.7   0.0    2.8  3  RRM_5           RNA recognition motif. (a.k.a. RRM, RBD, or R


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0     5e-14   1.5e-10       1      69 [.      53     123 ..      53     124 .. 0.90
   2 !   59.0   0.0   9.9e-20     3e-16       1      69 [.     179     250 ..     179     251 .. 0.94
   3 !   52.5   0.0     1e-17   3.1e-14       4      69 ..     354     419 ..     352     420 .. 0.97

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 5e-14
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEE..EEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskg..fafVeFeskedAekAlealngkklggrel 69 
                 ++VgnL++dv+++ Lk+++++ G++  +++    +g sk   + +Ve++++e+A++A+++l +++l+gr +
  KKY15645.1  53 VYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKVgaYVIVEYATREQAQNAVNTLSNQNLMGRLV 123
                 8************************999999997788876226668**********************965 PP

  == domain 2  score: 59.0 bits;  conditional E-value: 9.9e-20
                 EEEESETTTSSHHHHHHHHHT...TSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFsk...fGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 l+++nLp++v +++Lk+lF++    G+++++++  d tg++kg+++V Fes  dA++A++++ng+  +gr l
  KKY15645.1 179 LYISNLPFNVGWQDLKDLFRQaaqEGGVVRADVHLDPTGRPKGTGIVAFESANDARSAIQQFNGYDWQGRAL 250
                 8******************98444699***************************************999987 PP

  == domain 3  score: 52.5 bits;  conditional E-value: 1e-17
                 ESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   4 gnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                   Lp+ +++++L elF  +G++++ ++ ++++g+skg++ V+Fe+ edAe+A++++ g+ +ggr+l
  KKY15645.1 354 IYLPWATSNDDLVELFTTIGKVERGEIQYEQNGRSKGTGVVQFEKLEDAEEAINKFTGYIYGGRPL 419
                 579************************************************************986 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0     0.007        21      11      62 ..      60     118 ..      53     131 .. 0.74
   2 ?    1.2   0.0      0.12   3.7e+02      39      57 ..     222     240 ..     191     255 .. 0.86
   3 !    9.7   0.0   0.00029      0.86      13      58 ..     360     410 ..     356     416 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.007
                 SS--HHHHHHHCHCCS-ECEEEE.......-TTSSEEEEEESSHHHHHHHHHHHHHC-B CS
       RRM_3  11 kelsredikellsklgevayvdy.......ekgdkegevrFkedeeakkalekateakl 62 
                  +++ +++k+++++ gev + d+       +k  +   v +++ e+a++a++ + + +l
  KKY15645.1  60 YDVKWHHLKDFMRQAGEVLFADVlllpngmSKVGAYVIVEYATREQAQNAVNTLSNQNL 118
                 56677899************997322222134455567899999999999998887755 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.12
                 EEEEEESSHHHHHHHHHHH CS
       RRM_3  39 egevrFkedeeakkaleka 57 
                 +g v F+++++a+ a+++ 
  KKY15645.1 222 TGIVAFESANDARSAIQQF 240
                 799***********99876 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00029
                 --HHHHHHHCHCCS.....-ECEEEE-TTSSEEEEEESSHHHHHHHHHHHH CS
       RRM_3  13 lsredikellsklg.....evayvdyekgdkegevrFkedeeakkalekat 58 
                 +s +d+ el+  +g     e++y    + + +g v+F++ e+a++a++k t
  KKY15645.1 360 TSNDDLVELFTTIGkvergEIQYEQNGRSKGTGVVQFEKLEDAEEAINKFT 410
                 56788888888888666668889888899999***************9976 PP

>> GRP  Glycine rich protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   2.7    0.0015       4.4      52      70 ..       6      24 ..       1      50 [. 0.87
   2 !   19.3  15.4   4.6e-07    0.0014      51      91 ..     124     177 ..      77     179 .. 0.59
   3 ?   -6.5  40.2         6   1.8e+04      40      95 .]     252     303 ..     229     303 .. 0.57
   4 ?   -6.1  36.3         6   1.8e+04      46      80 ..     295     329 ..     294     352 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0015
         GRP 52 ggGgygggggggngGGGyk 70
                  Ggy+g g+gg  GGG++
  KKY15645.1  6 ASGGYSGSGYGGSRGGGGP 24
                6799999999999999985 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 4.6e-07
         GRP  51 h...............ggGgygggggggngGGGykgggGg.ygggggggeggyGgGy 91 
                                  +G +ggg +gg+gGGGy gggGg ygg+    +gg+GgG+
  KKY15645.1 124 YvredreaeprftgppSRGDFGGGPRGGYGGGGYGGGGGGgYGGH---ATGGGGGGR 177
                 134455566777777789999999999999999977665303332...223335555 PP

  == domain 3  score: -6.5 bits;  conditional E-value: 6
         GRP  40 vkdekyggggkh..ggGgygggggggngGGGykgggGgygggggggeggyGgGygggg 95 
                 v +++y     +  g+Gg+ggg g g++GGG  gg+G     g  g+ggyGgG+gg+g
  KKY15645.1 252 VREDRYANAAGGfgGRGGFGGGYGRGGYGGGF-GGRG-----GFSGRGGYGGGFGGRG 303
                 44444422211133555555555555555554.3333.....3444677788888876 PP

  == domain 4  score: -6.1 bits;  conditional E-value: 6
         GRP  46 ggggkhggGgygggggggngGGGykgggGgygggg 80 
                 +ggg +g+Ggyggggggg++GGG +  gG++ g g
  KKY15645.1 295 YGGGFGGRGGYGGGGGGGGYGGGSHSAGGQFTGPG 329
                 56778899****************99999999944 PP

>> Limkain-b1  Limkain b1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0079        24      41      76 ..      93     128 ..      84     135 .. 0.86
   2 ?    5.7   0.0     0.005        15      41      76 ..     220     255 ..     177     262 .. 0.68
   3 ?   -0.2   0.0      0.35     1e+03      40      63 ..     388     411 ..     384     425 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0079
  Limkain-b1  41 gksavlrfanqeaaeralkrleneDvfGnritvsek 76 
                 g   ++ +a +e a+ a+  l n +  G  + v+e 
  KKY15645.1  93 GAYVIVEYATREQAQNAVNTLSNQNLMGRLVYVRED 128
                 556799***********************9999987 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.005
  Limkain-b1  41 gksavlrfanqeaaeralkrleneDvfGnritvsek 76 
                 +++ ++ f++ + a+ a++++++ D  G  + v+e 
  KKY15645.1 220 KGTGIVAFESANDARSAIQQFNGYDWQGRALEVRED 255
                 5789************************99999986 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.35
  Limkain-b1  40 sgksavlrfanqeaaeralkrlen 63 
                 s+++ v++f++ e ae a+ ++ +
  KKY15645.1 388 SKGTGVVQFEKLEDAEEAINKFTG 411
                 67899************9988765 PP

>> ATP-grasp_2  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0018       5.4      33      77 ..     196     242 ..     188     249 .. 0.81
   2 ?    4.4   0.0    0.0082        24      26      77 ..     361     411 ..     355     414 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0018
                  HHHHHTSSSEEEEE--SS..STCCCTTCEEEESSHHHHHHHHHCCTT CS
  ATP-grasp_2  33 aakklgekelvvKaQvla..GGRGKagGvklvkskeeakeaakellg 77 
                   +++  ++  vv+a v+    GR K+ G+   +s+++a++a++++ g
   KKY15645.1 196 LFRQAAQEGGVVRADVHLdpTGRPKGTGIVAFESANDARSAIQQFNG 242
                  55566667779*****984469*******************998766 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0082
                  SHHHHHHHHHHHTSSSEEEEE--SSSTCCCTTCEEEESSHHHHHHHHHCCTT CS
  ATP-grasp_2  26 saeeaeeaakklgekelvvKaQvlaGGRGKagGvklvkskeeakeaakellg 77 
                  s++++ e ++ +g+ e     Q    GR K+ Gv   ++ e+a+ea++++ g
   KKY15645.1 361 SNDDLVELFTTIGKVE-RGEIQYEQNGRSKGTGVVQFEKLEDAEEAINKFTG 411
                  5556666666666555.455677889*******************9998766 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0034        10      66      94 ..      95     123 ..      87     131 .. 0.85
   2 ?   -1.2   0.0      0.49   1.5e+03      64      96 ..     220     252 ..     218     259 .. 0.88
   3 ?    2.9   0.0     0.025        76      41     102 ..     362     427 ..     342     446 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0034
       RRM_5  66 talvqmgdasaveravqHLnnaklfgkrl 94 
                 + +v+ +   +++ av+ L+n++l g+ +
  KKY15645.1  95 YVIVEYATREQAQNAVNTLSNQNLMGRLV 123
                 6799********************99755 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.49
       RRM_5  64 ketalvqmgdasaveravqHLnnaklfgkrlev 96 
                 k+t +v   +a ++  a+q +n+    g+ lev
  KKY15645.1 220 KGTGIVAFESANDARSAIQQFNGYDWQGRALEV 252
                 6889999999*************9999999887 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.025
       RRM_5  41 ldklFnlfclYgnvervkflkt....kketalvqmgdasaveravqHLnnaklfgkrlevalSKqq 102
                  d l  lf+  g ver  +        k+t +vq     ++e a++ + +    g++l + + K  
  KKY15645.1 362 NDDLVELFTTIGKVERGEIQYEqngrSKGTGVVQFEKLEDAEEAINKFTGYIYGGRPLGLSFVKYM 427
                 5788899999999999666554112247899*****************998776779999888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.47
# Mc/sec: 2877.64
//
Query:       KKY15646.1  [L=246]
Description: putative ubiquinone biosynthesis protein mitochondrial precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-31  105.7   0.7    1.4e-30  104.9   0.7    1.4  1  COQ9      COQ9


Domain annotation for each model (and alignments):
>> COQ9  COQ9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.7   7.8e-35   1.4e-30       3      77 .]     146     220 ..     145     220 .. 0.98

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 7.8e-35
        COQ9   3 naptslrelarlaDdiwraagDkstDfnwYtkRatLsavyastelymlqdksedfedtwaFldrriddvmaleka 77 
                 n+p+sl+el  l+D+iw++a D+++ f+wY+kRa+L+a+yastel+m +dks+df++t +Fldrr++dvm+++ka
  KKY15646.1 146 NIPQSLKELSLLSDEIWYLASDTDVTFSWYSKRASLAAIYASTELFMSTDKSKDFQETDEFLDRRLNDVMTVGKA 220
                 89**********************************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1562.46
//
Query:       KKY15647.1  [L=112]
Description: hypothetical protein UCRPC4_g06212 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   12.6   1.7        2.1    8.9   1.7    2.1  1  Cas3_C    Cas3 C-terminal domain


Domain annotation for each model (and alignments):
>> Cas3_C  Cas3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.7   0.00012       2.1      45      80 ..      70     105 ..       2     112 .] 0.90

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00012
                 TEEEEE-CH.GHHCHHHHCS-...-HHHHCSTTTTT CS
      Cas3_C  45 stvrlParleedidkaieeleektppaWqespwLrg 80 
                 +t+r P++ + + d++++e ee + + W +  wLr 
  KKY15647.1  70 ETLRYPQSKPTHYDDILREFEEAPDRTWLQRLWLRM 105
                 68999999999**********9999*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.31s 00:00:00.79 Elapsed: 00:00:00.48
# Mc/sec: 702.04
//
Query:       KKY15648.1  [L=355]
Description: putative metal homeostatis protein bsd2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-92  309.9   0.0    1.7e-92  309.2   0.0    1.3  1  DUF2370   Protein of unknown function (DUF2370)
  ------ inclusion threshold ------
      0.037   14.1   1.7       0.15   12.2   0.1    2.3  2  DUF1206   Domain of Unknown Function (DUF1206)
      0.071   13.2   1.5          2    8.5   0.2    2.5  2  Pico_P1A  Picornavirus coat protein (VP4)
       0.16   12.0   0.0       0.33   11.0   0.0    1.5  1  DUF2561   Protein of unknown function (DUF2561)


Domain annotation for each model (and alignments):
>> DUF2370  Protein of unknown function (DUF2370)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.2   0.0   3.8e-96   1.7e-92       6     226 .]     123     338 ..     114     338 .. 0.90

  Alignments for each domain:
  == domain 1  score: 309.2 bits;  conditional E-value: 3.8e-96
     DUF2370   6 sgrvvgkgagndGVFaNlsAkPdreeeeekeekpPtYeeAaaDaaPpYwettvlapslesdevlvdGlpvGnlfsfvwNllvsvsFqlvGFlltYlLHt 104
                 s+r ++  + ndGVFaNlsAkP+r+e  + ee+pP+Ye+AaaDa+PpYwett++ap++ sdev+vdGlpvG++fsf+wN ++s+sFqlvGFlltYlLHt
  KKY15648.1 123 SSRSLQ--SANDGVFANLSAKPERGE--KLEEQPPSYEQAAADATPPYWETTIVAPGMGSDEVYVDGLPVGSVFSFIWNGMISMSFQLVGFLLTYLLHT 217
                 556666..89*************999..58********************************************************************* PP

     DUF2370 105 thAakqGSraGLGitliqygfslrssaee.skvkkekeegrvepsdpnshdldkekvaekgekeeaaalsdlelaeeeknkesssewlayvlmilGlfi 202
                 thAak+GSraGLG+tl+qygf+++ s ++ ++ +++ ++   +p+dpn+hd+++++v++k++++++++  d   ++   ++  ssewl+yvlmi+G+fi
  KKY15648.1 218 THAAKNGSRAGLGLTLVQYGFYMKGSGTSgGSDSADPSQFAGAPTDPNAHDFNPNTVTSKTASSSGSSGGDS--SSGGLSSLASSEWLSYVLMIVGWFI 314
                 *************************999834455666666889**************877777777666665..444456689**************** PP

     DUF2370 203 liksvvdylrvkrlekkvlasedr 226
                 li++v+dylr++r+e++vl+s++r
  KKY15648.1 315 LIRAVSDYLRARRHEQLVLQSPNR 338
                 ********************9975 PP

>> DUF1206  Domain of Unknown Function (DUF1206)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2      0.14   6.3e+02      11      33 ..     227     250 ..     219     259 .. 0.65
   2 ?   12.2   0.1   3.3e-05      0.15      19      69 ..     277     327 ..     273     328 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.14
     DUF1206  11 lllgllalqaalggggssas.gsd 33 
                 ++lgl+++q+ +   gs++s gsd
  KKY15648.1 227 AGLGLTLVQYGFYMKGSGTSgGSD 250
                 678999999999433333331222 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 3.3e-05
     DUF1206  19 qaalggggssasgsdgalatlleqpfGrvllglvglgllgyglwqlveAvt 69 
                 ++a ++g+s++++s+g l +l+++++ +++l++vg  +l+ ++   ++A++
  KKY15648.1 277 KTASSSGSSGGDSSSGGLSSLASSEWLSYVLMIVGWFILIRAVSDYLRARR 327
                 567778888888****************************99999999875 PP

>> Pico_P1A  Picornavirus coat protein (VP4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2   0.00044         2      32      49 ..      34      51 ..      32      55 .. 0.93
   2 ?    3.0   0.1     0.024   1.1e+02      11      53 ..     218     258 ..     215     266 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00044
                SSSGGGS------B---T CS
    Pico_P1A 32 ykdaassaaskldfsqdP 49
                ++  ass +s+  fsqdP
  KKY15648.1 34 FRSRASSPTSRHVFSQDP 51
                8999*************9 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.024
                 S-TSSSSSSSSS--EEEEE--S.SSGGGS------B---THHHH CS
    Pico_P1A  11 ahetsnrvsnGsslnyttinyy.kdaassaaskldfsqdPskft 53 
                 +h ++n    G  l  ++  +y k + +s+ s    s dPs+f+
  KKY15648.1 218 THAAKNGSRAGLGLTLVQYGFYmKGSGTSGGS---DSADPSQFA 258
                 67778877777777777776552555555555...589999996 PP

>> DUF2561  Protein of unknown function (DUF2561)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.3e-05      0.33      60      94 ..     298     332 ..     288     354 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.3e-05
     DUF2561  60 shttwvLyavivvsalvivgavPlLLrarrvaeae 94 
                 + + w+ y++++v   +++ av   Lrarr  +  
  KKY15648.1 298 ASSEWLSYVLMIVGWFILIRAVSDYLRARRHEQLV 332
                 5689**************************87754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.52
# Mc/sec: 2041.66
//
Query:       KKY15649.1  [L=804]
Description: putative threonyl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-31  107.3   0.0    9.5e-28   97.4   0.0    2.5  2  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    7.1e-19   67.7   0.6    1.6e-18   66.6   0.6    1.6  1  HGTP_anticodon  Anticodon binding domain
    1.4e-11   44.3   0.0    2.9e-11   43.3   0.0    1.6  1  tRNA_SAD        Threonyl and Alanyl tRNA synthetase second ad
    3.4e-06   27.0   0.1    1.2e-05   25.3   0.1    1.9  2  TGS             TGS domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4   0.0   2.1e-31   9.5e-28       9     150 ..     459     632 ..     453     640 .. 0.91
   2 !    7.1   0.0    0.0011       4.8     156     178 ..     662     686 ..     655     687 .. 0.86

  Alignments for each domain:
  == domain 1  score: 97.4 bits;  conditional E-value: 2.1e-31
                   EEEEE-SSSHHHHHHHHHHHEEEBGG.SSEEEEEEEEEEBTTTS.TBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT.SCEEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   9 reyiLkPtneetfvelirdevlrskr.LPlklyqiqtkyRdEks.dsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlglefraiie 103
                     ++LkP+n+++++ l+r+e  r +r LP ++++++ ++R+E+s +++GL+Rvr+F+q+d ++f++ +++ ++++ l+  +++++  +g++fr +++
    KKY15649.1 459 GVFALKPMNCPGHCLLFREE-TRGYRdLPWRIADFGVLHRNEASgALSGLTRVRKFQQDDTHIFCTLEQVTSEIQALFDFMNHVYGLFGFKFR-LKL 553
                   5689****************.999666*****************99********************999**********************87.566 PP

                   EGTTSC..................................BTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEE CS
                   xxxxxx..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 104 lmsaks..................................adykdkkefeavsesltkgieigtiqklgtrlserlgatvl 150
                   +++ +                                   a+y++k ++++ +  l+++ +++tiq + ++ ++ +g++++
    KKY15649.1 554 STRPEGymgtldqwndaearlkealgtfcgddwelnegdgAFYGPKIDVTIADS-LQREFQCATIQLD-FQGPRNFGLEYI 632
                   65544456667799999*********************************9999.*************.********9885 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0011
                   EEEEEEEEEE.EE.HHHHHHHHHHH CS
                   xxxxxxxxxx.xx.xxxxxxxxxxx RF
  tRNA-synt_2b 156 eksvimicaa.ig.veRllsaileq 178
                   + +++mi++a ig  eR+++++ e+
    KKY15649.1 662 RSRPVMIHRAiIGsFERFIGILCEH 686
                   56788****************9997 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.6   3.6e-22   1.6e-18       1      88 [.     699     787 ..     699     793 .. 0.90

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 3.6e-22
                     SEEEEESSSSHHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEE....EEEETTHHH CS
  HGTP_anticodon   1 qvvviplnekaeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreq....ervsldelv 88 
                     q++vip+++   + e+ya+++++ +r++ +++++d s+++++kkir+a+ ++++f++vvG++e++++ +++r+rd++e     + ++lde++
      KKY15649.1 699 QIMVIPIHK---ATEDYAQEVQQLFRKQRFYIDVDLSSNTLQKKIRNAQIAQYNFVFVVGAEEAQNRALNIRNRDDQESqkkgVLIPLDEAL 787
                     899******...899***********************************************************988663445577777765 PP

>> tRNA_SAD  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   6.4e-15   2.9e-11       2      43 ..     278     325 ..     277     326 .. 0.97

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 6.4e-15
                 EEEEETT.EEEEESS---SBGGGC-SEEEE.......CCECCCTCEEEE CS
    tRNA_SAD   2 rvvsiGdisvelCgGtHvpnTgeIgafkil.......seesiakglrRI 43 
                 +v++ G+  v+lC G+H++nT+ I+afki+        ++++++ l+RI
  KKY15649.1 278 TVYRNGS-LVDLCQGPHIQNTKRIEAFKIMknssayfLGDQSNDSLQRI 325
                 79****8.****************************************9 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1   2.6e-09   1.2e-05      10      59 ..     118     168 ..     106     169 .. 0.92
   2 ?   -2.6   0.0       1.3   5.9e+03       5      24 ..     271     290 ..     269     293 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 2.6e-09
                 EEEEETTB-.HHHHHHHHSTTHHHHEEEEEECSEEEETTSBB-SSEEEEEE CS
         TGS  10 vpdlprgat.veDfAykIhrslakkfiyAlVnGqrvgldhvLedgdvveIv 59 
                 v+d + ++t + +  +++ +++  ++++A+V+Gq+++ld++Le  ++ve +
  KKY15649.1 118 VIDGKAWETtPGQMLRHVPKEVSADAVVAKVDGQLWDLDRPLEKHAKVEFL 168
                 6788999999************************************99975 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.3
                 ETTSSEEEEETTB-HHHHHH CS
         TGS   5 tPdGkvpdlprgatveDfAy 24 
                  PdG   ++ r+ + +D+++
  KKY15649.1 271 VPDGTSSTVYRNGSLVDLCQ 290
                 58888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.49
# Mc/sec: 4931.71
//
Query:       KKY15650.1  [L=191]
Description: putative h aca ribonucleoprotein complex subunit 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-35  122.1   0.0      2e-35  121.8   0.0    1.0  1  Gar1      Gar1/Naf1 RNA binding region


Domain annotation for each model (and alignments):
>> Gar1  Gar1/Naf1 RNA binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.8   0.0   1.1e-39     2e-35      22     109 ..      28     112 ..      22     127 .. 0.94

  Alignments for each domain:
  == domain 1  score: 121.8 bits;  conditional E-value: 1.1e-39
                 EEEEEEEEETTEEEEEE---S--B--BTT-EEEETT--EEEE--EEES-SSS-EEEEE--GGHHHHHHHTTTTSEEEEE-X....XXXXX CS
        Gar1  22 eiGtvssivenevviksttsgekkvldfnsilflenktqiGkVdEifGpvnepyysVklnsseeikaksfkvgdkvyiapd..lplerfl 109
                 e+Gt+ +++e+e+v++st+s   k+++fn+ +flenkt+iGkVdEi+Gp+n++y+++k++  e+i+a+sfk+gdk+yi  d  lple+fl
  KKY15650.1  28 EMGTFVHACEGEMVCESTNS---KIPYFNASIFLENKTSIGKVDEILGPINQVYFTIKPQ--EGIQATSFKAGDKFYIGGDklLPLEKFL 112
                 8*****************55...9************************************..***************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1225.84
//
Query:       KKY15651.1  [L=417]
Description: hypothetical protein UCRPC4_g06216 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        8.6    5.1   8.0         11    4.8   8.0    1.1  1  Apt1      Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   8.0   0.00061        11     332     386 ..     146     197 ..     103     257 .. 0.50

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.00061
        Apt1 332 ssssssassssssssrssslelrlk.ptsstssssssessssssskkrsseessle 386
                 s +++ a+s+s sss+ +s++ +   p ss+s+sss++   ssss+++s+   s++
  KKY15651.1 146 SCKKTAAASNSGSSSGDGSKSGSGAsP-SSSSTSSSKNGAGSSSSSSSST---SAS 197
                 111111122222222222221111111.1111111111111111111111...111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1029  (0.0573931); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.36s 00:00:01.08 Elapsed: 00:00:00.53
# Mc/sec: 2383.90
//
Query:       KKY15652.1  [L=437]
Description: putative cbs domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-16   60.3   3.3    5.3e-07   30.0   0.0    5.2  5  CBS       CBS domain
  ------ inclusion threshold ------
        2.4    7.9  13.9        3.5    7.3  13.9    1.2  1  DUF5349   Family of unknown function (DUF5349)


Domain annotation for each model (and alignments):
>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.0     0.008        72       8      55 ..      32      81 ..      24      83 .. 0.75
   2 !   30.0   0.0   5.9e-11   5.3e-07       6      56 ..     123     173 ..     116     174 .. 0.84
   3 !   13.2   0.0     1e-05     0.094      11      48 ..     202     239 ..     195     244 .. 0.86
   4 ?   -0.0   0.0      0.14   1.3e+03       8      37 ..     279     308 ..     274     311 .. 0.78
   5 !    8.7   0.1   0.00026       2.3      39      54 ..     382     397 ..     381     400 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.008
                SCEEEETTSBHHHHHHHHHHHTSSEEEEE.....ETTTBEEEEEEHHHHHHHH CS
         CBS  8 dvvtvppdttleealelmrekgvsrlPVV.....dedgklvGivtlrDllral 55
                d+ +v  dtt+e a +l+++   s+ P +     + +  ++G +  +Dl  +l
  KKY15652.1 32 DLRFVEADTTVEAATNLLVD---SGAPLLliretPQSQSVIGTFDYTDLNAYL 81
                5558999***********99...899875588775566699999999886666 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 5.9e-11
                 BSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTT..BEEEEEEHHHHHHHHH CS
         CBS   6 trdvvtvppdttleealelmrekgvsrlPVVdedg..klvGivtlrDllrall 56 
                 ++++v++  + +l++a+e++   gv+r+ VV e+g  k vGi++++ l+r+l 
  KKY15652.1 123 SDPLVFIADTGDLSKAVEIF-GGGVHRIVVV-EEGtqKAVGILSQSRLVRFLW 173
                 568899999999********.666****778.677689*************97 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 1e-05
                 EEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEH CS
         CBS  11 tvppdttleealelmrekgvsrlPVVdedgklvGivtl 48 
                  ++ d +l+eal l+ ++g+s+l V+d+  +++G ++ 
  KKY15652.1 202 GINGDKPLAEALTLLLNEGISSLAVLDNARNVIGNIST 239
                 578899********99**********87778***8875 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.14
                 SCEEEETTSBHHHHHHHHHHHTSSEEEEEE CS
         CBS   8 dvvtvppdttleealelmrekgvsrlPVVd 37 
                 +v+ v+p +tl+  + +++ ++ +r+ ++d
  KKY15652.1 279 PVFHVTPLSTLAHTVAKLVATKAHRMWITD 308
                 778999999988888887777767998885 PP

  == domain 5  score: 8.7 bits;  conditional E-value: 0.00026
                 TTBEEEEEEHHHHHHH CS
         CBS  39 dgklvGivtlrDllra 54 
                 +g+lvG+++l+D+l++
  KKY15652.1 382 SGHLVGVISLTDVLNL 397
                 589***********87 PP

>> DUF5349  Family of unknown function (DUF5349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  13.9   0.00039       3.5     198     309 ..     311     427 ..     299     436 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00039
     DUF5349 198 stsssassydsseFdyilPsssaassstsatssssnnslntnvstsaslsgdllddlpvaptasslvgdlsstetvsnlsasqallessaassslglsn 296
                 s sssa ++ s++   ++P++s+ s s+   s+ss +s+ + ++t  s+++ ++ +   + +as l g++ s++ v   s    l  ++ as+  + + 
  KKY15652.1 311 SPSSSAPPTPSASHASLVPTTSHSSASPANPSNSSTPSTSSIPATPPSATTPFIAPSGPSISASALSGSMLSGHLVGVISLTDVLNLFARASGLQPRDP 409
                 55999999**********************************************9987776677777***************************99999 PP

     DUF5349 297 slalqa.....snsgqas 309
                 s + qa     s+s ++s
  KKY15652.1 410 SETRQArrrssSSSARKS 427
                 999998665333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.52
# Mc/sec: 2550.99
//
Query:       KKY15653.1  [L=354]
Description: putative ferredoxin reductase-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-19   70.1   0.0    3.4e-18   66.3   0.0    2.2  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    5.2e-18   65.2   0.0    9.8e-18   64.3   0.0    1.5  1  FAD_binding_6  Oxidoreductase FAD-binding domain
    6.2e-09   36.2   0.0    1.9e-08   34.6   0.0    1.8  1  NAD_binding_6  Ferric reductase NAD binding domain
  ------ inclusion threshold ------
       0.16   12.2   0.8       0.36   11.1   0.8    1.5  1  DUF5470        Family of unknown function (DUF5470)


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   7.6e-22   3.4e-18       1     107 [.     188     332 ..     188     334 .. 0.92

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 7.6e-22
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEE.......ESSCTTTSSSEESSHHHHHHHHHHH.. CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvav.......vsreeagweggkgrvqdalleells.. 87 
                    +iagG Gi+P++s+ + il +++dkt++ l++G++  +d+++r el +l++++p+rl v+++       +sr + ++   +gr+++ +le+++   
     KKY15653.1 188 LIAGGAGITPLYSLTKSILSDPTDKTRIELIWGVNGPQDMVLRSELSALESQHPERLSVTYAisgpssdLSRSDPQK-FPEGRITKTILEQVIRkf 282
                    7*************************************************************999987644444443.679999999999999999 PP

                    ..............................HSSTTEEEEEECSHHHHHHH CS
  NAD_binding_1  88 ..............................lkkeethvyvCGppgMikav 107
                                                   + ++t v++CGpp+M++ +
     KKY15653.1 283 esqptsssssaaaaakakvssqsksdptvwGDAKGTKVFLCGPPAMEESI 332
                    99***************************98899*************987 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   2.2e-21   9.8e-18       3      95 ..      78     172 ..      76     176 .. 0.92

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 2.2e-21
                    EEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEECETTC..CEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHHHCS-TT-EEEEEEEE- CS
  FAD_binding_6   3 kltekeevsedtrifrfklpsekqklglpvGqhvflrlkikge..aviRsYtpissenekGelellvkvypgGkmsqaLdelkigdtleikGPlG 95 
                    k++++e++++dt++++f+lp++++  g+p+   v  + + +g    v R+Ytpiss+++ G l llvk+yp+G+ s +L++l +g+tl+++GP+ 
     KKY15653.1  78 KVSRVEQINHDTKKITFELPEQDSISGIPPSAAVLTQHTPSGAwfPVFRPYTPISSPDTPGSLTLLVKKYPQGRASAHLHSLIPGSTLTFRGPIP 172
                    7999****************************999999966652269**********************************************85 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   4.2e-12   1.9e-08       3     152 ..     185     333 ..     183     336 .. 0.76

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 4.2e-12
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   3 nvllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeeksegnieihiYlTseyeaedasdqlissiegenses 98 
                    ++ll+agG Gitp++s+ k +l        ++++i+liw v+  +++ + +  L+ le++++e +++++  +++ ++  ++sd  ++  eg  ++ 
     KKY15653.1 185 SILLIAGGAGITPLYSLTKSILSDPT----DKTRIELIWGVNGPQDMVLRS-ELSALESQHPE-RLSVTYAISGPSSDLSRSD-PQKFPEGRITKT 273
                    79********************9997....9***************96666.99*********.9999999999999966666.333334443333 PP

                    xx........xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6  99 lk........qgvdavsgtrnvkihfgRPnlkevlkdi.askhknssvgvfvCGppklvkevk 152
                    +         +   +++ +++     ++ +++++ k+   +    + + vf CGpp++ + ++
     KKY15653.1 274 ILeqvirkfeS---QPTSSSSSAAAAAKAKVSSQSKSDpTVWGDAKGTKVFLCGPPAMEESIA 333
                    33456665432...23333346677779999988887745666777899*********98876 PP

>> DUF5470  Family of unknown function (DUF5470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.8   8.1e-05      0.36       8      40 ..     272     304 ..     266     309 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.1e-05
     DUF5470   8 kiientveskyksssvssssstGasaklslsey 40 
                 k i + v  k+ s   sssss+ a+ak  +s  
  KKY15653.1 272 KTILEQVIRKFESQPTSSSSSAAAAAKAKVSSQ 304
                 667778889*****************9988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2454.50
//
Query:       KKY15687.1  [L=555]
Description: putative diphthamide biosynthesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-85  287.5   0.0    1.7e-85  287.1   0.0    1.2  1  Diphthamide_syn  Putative diphthamide synthesis protein
  ------ inclusion threshold ------
      0.081   13.7   0.6       0.36   11.6   0.6    2.1  1  Gly-rich_Ago1    Glycine-rich region of argonaut


Domain annotation for each model (and alignments):
>> Diphthamide_syn  Putative diphthamide synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.1   0.0   1.9e-89   1.7e-85       1     302 [.      64     407 ..      64     408 .. 0.90

  Alignments for each domain:
  == domain 1  score: 287.1 bits;  conditional E-value: 1.9e-89
  Diphthamide_syn   1 fPegllpdsaeiadil.eef..........gae........................vvilgDttYGaCcvdevaaehlgadllvHyGhsclsp 59 
                      fP+++l+d++++++ l + +            +                        ++il+Dt+YG+Ccvdevaaeh++ad +vHyG++clsp
       KKY15687.1  64 FPDEMLHDAPRVFQLLsRGLkpsykgrsqnP-SqtdpdfvqeqtqqmsiqepkdtakLFILADTSYGSCCVDEVAAEHVNADSIVHYGRACLSP 156
                      9***************655677777666550.0555666666667777777778777************************************* PP

  Diphthamide_syn  60 vdrlpvlYvfveieldvehlvetlkknf.kekkkivlvstiqyahaleevkeeleeegyevvkvpqsekplspgevlgctspklkee.eeevd. 150
                      + rlpvl+vf+++++d+ + +++++++f + ++k+++ ++i+y+ +++++ + l ++gy+++  + +  + + + + ++t p+   + +ee++ 
       KKY15687.1 157 TARLPVLHVFTQSKVDLGRAISSFTETFpSLETKVIITADITYTAHVSTLNSSLVARGYTNL-HAAEIVHDPSSPIPNRTVPAKVMDdPEELQg 249
                      ****************************555999*********************99*****.5555599999999999999865543555556 PP

  Diphthamide_syn 151 .ailyigdgrfhllslmlsn.pklpvyrydpys.kklteesydakkllrrRyaaiekakdakkvGiivgtlgvqgrlelverlkkllkeagkks 241
                        + +i++++++ll ++ s+   ++++++d +s ++l+++s  ++ +lrrRya+++++++   +Gi+++tl+v+++l++v+++kkl++ agkks
       KKY15687.1 250 wHVYHIAQPPTSLLLTLSSRvAGFHIFSADSTSsSRLSSQSTYTSAMLRRRYALVTNLATVPIWGILINTLSVKNYLHMVDHVKKLIDGAGKKS 343
                      6779***************98889******999789********************************************************** PP

  Diphthamide_syn 242 ylvlvgelnpakLanfaeidafVlvaCprlsiddgkeFekPvltpyElevalg...erewteey 302
                      y+++vg+ln+ak+anf+ei ++V+++C+++s++d+++F+kPv+tp+El +al+   +r wt+++
       KKY15687.1 344 YMFVVGKLNTAKVANFSEIGGWVVIGCWESSLIDSQDFYKPVITPFELTLALSsdsDRIWTGQW 407
                      *****************************************************99899999887 PP

>> Gly-rich_Ago1  Glycine-rich region of argonaut
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.6     4e-05      0.36      48      93 ..      69     113 ..      63     119 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4e-05
  Gly-rich_Ago1  48 LHQAtqaqyqavvvqpspseagsssqpaevstaqvaqqfqqLsvqd 93 
                    LH A+++ +q       ps  g s++p+++ +  v++q qq+s+q+
     KKY15687.1  69 LHDAPRV-FQLLSRGLKPSYKGRSQNPSQTDPDFVQEQTQQMSIQE 113
                    7888776.5666678899**************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.49
# Mc/sec: 3384.33
//
Query:       KKY15688.1  [L=223]
Description: putative cutinase precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-53  180.6   0.0    3.1e-53  180.4   0.0    1.0  1  Cutinase  Cutinase
     0.0011   18.8   0.0     0.0023   17.8   0.0    1.5  2  VirJ      Bacterial virulence protein (VirJ)
  ------ inclusion threshold ------
       0.02   15.4   0.2      0.081   13.4   0.0    1.9  2  DUF3739   Filamentous haemagglutinin family outer membrane pr


Domain annotation for each model (and alignments):
>> Cutinase  Cutinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.4   0.0   5.2e-57   3.1e-53       2     177 ..      44     220 ..      43     221 .. 0.95

  Alignments for each domain:
  == domain 1  score: 180.4 bits;  conditional E-value: 5.2e-57
                 --SEEEEEE--TT--TTT.SSHHHHHHHHHHHH.TTT-EEEEE------CGGSTTSS-HHHHHHHHHHHHHHHHH-TT-EEEEEEETHHHHHHHHHHTT CS
    Cutinase   2 ckdvevifArgttepggl.gsvGeavvsalesavgsksvavqgvnYpAdleqlyegseeagakeaaalvqslaskCPdtkivlgGYSqGaqvidnaieg 99 
                 ck v+vifArgt e+g++   +G+ +++al++ +gs+++avqgv+Y A+le+++eg++ +ga++ a+lv+ +askCP+t+ivl+GYSqGaqvi+ a++ 
  KKY15688.1  44 CKAVTVIFARGTFEAGNVgLLAGPPFFDALQKLIGSDNLAVQGVDYAASLEGYLEGGDPEGANTTASLVNLAASKCPNTQIVLSGYSQGAQVIHLAVKT 142
                 ******************7789***************************************************************************** PP

                 ........S-HHHHHHEEEEEEES-TTCCCCTTS-TTS-GGGEEEE--TT-GGG.TS----GGGG-GGGG.HHHHHHHHHHH CS
    Cutinase 100 ga..tat.lpaavadkvaavvlfGdpsnvaglpevsklyaskikslCdagDpiC.gsgneleaHlsYvseyttqaakFvvsk 177
                 +   t+t ++ ++ +kvaavvlfGdp++ ++lp++++   s ++++C+++D+iC g  + l+aHlsY+++ +++aa+Fv  k
  KKY15688.1 143 ASssTFTpITTSALEKVAAVVLFGDPDEDQSLPGIAE---SDVETFCAKDDLICdGLPIPLPAHLSYADD-ADNAAEFVEGK 220
                 88545559****************************9...**************77789999********.9*******876 PP

>> VirJ  Bacterial virulence protein (VirJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.8e-07    0.0023      30      99 ..      82     153 ..      71     168 .. 0.78
   2 ?   -1.3   0.0      0.28   1.7e+03     135     164 ..     155     184 ..     141     188 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.8e-07
        VirJ  30 vpvvGvd...sLryfWsertPeevaaDldrlikkyakrwkkkkvvliGysfGaDvlPaaynkLkaatrdkvkl 99 
                 + v Gvd   sL  + +  +Pe  a+ ++ l++ +a++  ++++vl Gys+Ga v+  a+++ +++t   +++
  KKY15688.1  82 LAVQGVDyaaSLEGYLEGGDPEG-ANTTASLVNLAASKCPNTQIVLSGYSQGAQVIHLAVKTASSSTFTPITT 153
                 55556554447888888899986.677899***************************9999887776665555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.28
        VirJ 135 kldakrvvCiyGkdekdeacpelkakgvev 164
                 +l++   v ++G  ++d++ p   ++ ve+
  KKY15688.1 155 ALEKVAAVVLFGDPDEDQSLPGIAESDVET 184
                 567777888999999999999888877765 PP

>> DUF3739  Filamentous haemagglutinin family outer membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.4e-05     0.081      63     104 ..      45      87 ..      30      93 .. 0.81
   2 ?   -0.3   0.0      0.24   1.5e+03      10      53 ..      94     137 ..      88     158 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.4e-05
     DUF3739  63 gdvdliApkGtidageAGiragnvvvaa.kavvnadniqvsgs 104
                   v++i  +Gt++ag+ G+ ag  +++a ++++++dn++v+g 
  KKY15688.1  45 KAVTVIFARGTFEAGNVGLLAGPPFFDAlQKLIGSDNLAVQGV 87 
                 34889999************999888883679*********96 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.24
     DUF3739  10 eGdidAGrgsktalsapppkivvdedgnvtlelkgaasGsGirt 53 
                 eG ++ G    ++++a  +++ + +  n++++l+g + G+ +  
  KKY15688.1  94 EGYLEGGDPEGANTTASLVNLAASKCPNTQIVLSGYSQGAQVIH 137
                 56666666555566666666677777777777777777776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 1531.16
//
Query:       KKY15689.1  [L=319]
Description: putative c6 zinc finger domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00065   18.6   1.9    0.00065   18.6   1.9    1.6  2  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   1.9   3.6e-08   0.00065      39     108 ..       1      70 [.       1      80 [. 0.79
   2 ?   -3.8   0.6      0.23   4.1e+03     345     374 ..     268     294 ..     242     298 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.6e-08
  Fungal_trans_2  39 lhallalsafhlqskgpkds.lereakrykslalkelqealaelsstlsrnekykdiLaai...Lllcsieiss 108
                     +hallals++hl +++p++s  +   +++  la++ +q+ l+  + + +      di+  i   ++ +s+ + s
      KKY15689.1   1 MHALLALSSRHLMHLQPSQSaHQFAHTHHTHLAISTFQKQLQSQNLKAE----NMDIFFGIniiMSIISFSVDS 70 
                     7**************999999888999***************9999998....677777776445555544333 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.23
  Fungal_trans_2 345 gnvrrarqvleevWrrrddgeekidWrdvm 374
                      ++ + ++ le  W++ +   e+ dW + m
      KKY15689.1 268 ESYLKDKERLENDWKEDR---ETRDWAEEM 294
                     555555666777777777...467777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2216.67
//
Query:       KKY15690.1  [L=195]
Description: putative nuclear movement protein nudc [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-17   64.1   0.5    3.6e-17   63.2   0.0    1.7  3  CS        CS domain


Domain annotation for each model (and alignments):
>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.0     2e-21   3.6e-17       2      76 .]      34     111 ..      33     111 .. 0.95
   2 ?   -3.7   0.0         1   1.8e+04      55      62 ..     132     139 ..     130     141 .. 0.78
   3 ?   -3.2   0.0         1   1.8e+04      22      36 ..     170     184 ..     166     189 .. 0.74

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 2e-21
                 SCEEEEETTEEEEEEE-TTCTTTTTCEEEEEETTEEEEEETS.CEEEEECEBSS-BETTTEEEEEET....TEEEEEEEB CS
          CS   2 kydWyQtldeVvvtiyvkkvnikkkdvkvefkerslkvkigk.eklliegeLfgpIdpeesswties....kkveitLkK 76 
                  y+W+Qt++++++t+++   n +++d+ +++k+++++v + k  +++++ge+ +pI ++es+wt+es    k++ i+L+K
  KKY15690.1  34 PYKWTQTISDLDITVPIAA-NLRARDLVITLKSKHISVAV-KgSSPILSGEFPHPIRVDESTWTLEStpsgKEISIHLDK 111
                 69***************99.9*******************.5579999******************779*********99 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1
                 -BETTTEE CS
          CS  55 pIdpeess 62 
                 +I+pe+s+
  KKY15690.1 132 KIVPENSK 139
                 79999997 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1
                 TTTTTCEEEEEETTE CS
          CS  22 nikkkdvkvefkers 36 
                 ++kk+d+  +f +++
  KKY15690.1 170 EQKKQDMLAKFMKEH 184
                 578888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.29s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1318.98
//
Query:       KKY15691.1  [L=1230]
Description: putative isoleucyl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.3e-151  505.8   0.0   1.7e-151  505.5   0.0    1.1  1  tRNA-synt_1    tRNA synthetases class I (I, L, M and V)
    7.7e-20   71.0   0.0    2.4e-13   49.6   0.0    3.6  3  tRNA-synt_1g   tRNA synthetases class I (M)
    2.2e-19   69.9   0.1    5.5e-19   68.6   0.1    1.7  1  Anticodon_1    Anticodon-binding domain of tRNA
     0.0029   17.0   0.0        1.8    7.8   0.0    2.8  3  tRNA-synt_1e   tRNA synthetases class I (C) catalytic domain
     0.0065   16.0   0.0      0.015   14.8   0.0    1.5  1  tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
  ------ inclusion threshold ------
      0.011   16.1   0.0      0.031   14.7   0.0    1.8  1  Propep_M14     Carboxypeptidase activation peptide


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  505.5   0.0  5.8e-155  1.7e-151      19     601 ..     202     835 ..     186     836 .. 0.90

  Alignments for each domain:
  == domain 1  score: 505.5 bits;  conditional E-value: 5.8e-155
  tRNA-synt_1  19 ekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgreefrekvrewkaeyaeeir 116
                  +++ ++fil+dgPPy++G lH+Gha++k+lkdi++r++  +Gk+v+yvpGwD++Gl+ie k  ++  +k+ k++   + +e+r+  r  +++ +e+++
   KKY15691.1 202 SEDDNNFILHDGPPYANGDLHVGHAVNKILKDIICRFQLSQGKRVEYVPGWDCHGLPIELKALEQ-HKKGLKDQPFPSPTEIRQIARRLAETTVERQK 298
                  456899*****************************************************987766.3788888888999******************* PP

  tRNA-synt_1 117 kqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEveykdkk.dalihvafpladkee........vklvia 205
                  +q++  G+++D+d+  +T+dke+e  +  vf  l+ +gli r +k+v+ws+++ tal+e+E eykd + +++ +va+pl+  e+        vk  i+
   KKY15691.1 299 EQFRSWGIMADWDNAWKTMDKEFELRQLSVFLSLYSQGLITRQHKPVYWSPSTLTALAEAELEYKDDHtSTAAFVAYPLDVPEDtnashfsgVKALIW 396
                  ****************************************************************9865278899*****6666556788899****** PP

  tRNA-synt_1 206 TTtPeTllgdtavavnpeldyv....itkeklilaeallkslvkke.sek.kiledergkeLegk..evelplvnrki..piiaddyvdkeaGtGvVk 293
                  TTtP+Tl++++a+a+  ++ y+     +  +l +a+++l+ + +k       +++++ g+ L+ k  +++ p+ + +i  pi +  +v+  +GtG+V+
   KKY15691.1 397 TTTPWTLPANQAIAIREDMTYSivesEEFGRLFIAKSRLDFVKDKAgIVFnVLEDHIPGSFLIEKgfTYRSPFDKSDIgrPIYTASFVTDSTGTGLVH 494
                  *********************9744323335799*********9997544266677899999876447899**66655449***************** PP

  tRNA-synt_1 294 iaPahdedDyevg....kkynlevinildedgtlteea.....aefeglkvfda.rkkvveelkekglllkaekiehsvpfcerskkpiiyrateqWf 381
                  +aP+h+ dDy++     k+ +++v  ++d+ g++t +a     +  +gl +  a +kkv+++l +k +l+++ + +h++p+++rskkpi+ rat qWf
   KKY15691.1 495 CAPGHGMDDYNALrlwiKDGKVRVKAPIDDGGHFTADAmpddpGYLHGLFIYGAgQKKVLQYLIDKKMLVHSYSLKHKYPYDWRSKKPIVIRATAQWF 592
                  **********9852222566789***************99998889***998774799**************************************** PP

  tRNA-synt_1 382 vrvkeladaalkavekvqfvpkskekryaswleniqdWciSRqrwWGhriplfvsketeevvvreelkelvagreeeeaekkalekeakdkl...... 473
                    v++++  a++++e+v f p ++++r +s+len+++WciSRqr WG++ip+ ++++t+e v++e++  +  ++  +++ ++++++   d        
   KKY15691.1 593 ADVHRIKYMAIQSLEDVMFLPGTGKTRLKSFLENRSEWCISRQRAWGVPIPALYDQRTGEAVMTEQTITHIMQIIRDRGIDAWWSDPEDDPAwvhpsl 690
                  ************************************************************************************98777766789999 PP

  tRNA-synt_1 474 ..kkekgelekdedvlDvWFsSgswpfstl.gypeedteelkkffpadmlleGlDiirgWvarlillslaltgse........Pfkevlvhglvrdee 560
                     ++ +++++ +d++DvWF+Sg + + ++  y+   + +      ad+++eG D++rgW+++++l+s+  +  +        P+  +l+hg+++d++
   KKY15691.1 691 laDSSPHDFRRGTDTMDVWFDSGTSWSEIMqRYGAG-R-DT----LADLYIEGTDQHRGWFQSSLLTSIGYQTATkkiaspkaPYGALLTHGFTLDAQ 782
                  9988999***************96555555055555.3.33....37*******************99877666666889999*************** PP

  tRNA-synt_1 561 GrKmSKslgNvidpldvik............kygadalRltlilsdvgrdinl 601
                  G+KmSKslgNvi+pl++++             +g dalRl+++++d + di +
   KKY15691.1 783 GKKMSKSLGNVISPLQILTgkmsgfqqqkdsGLGPDALRLWVASNDFTTDIVV 835
                  *****************************9999*************9999865 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   8.2e-17   2.4e-13       8     136 ..     215     361 ..     210     370 .. 0.82
   2 !   10.0   0.0   8.9e-05      0.27     177     239 ..     584     644 ..     573     663 .. 0.79
   3 !    6.5   0.0   0.00097       2.9     315     342 ..     772     800 ..     757     837 .. 0.86

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 8.2e-17
                   B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-.........H.......HHHHHHHHHHHHHHHHHTT--..-S CS
  tRNA-synt_1g   8 pYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvt.........p.......eelvekvheeikelfkklnis..fd 86 
                   pYang+lH+Gh+++ i  Di++R++  +g+ v +v g D hG pielkA ++  +         p       + l+e++ e++ke+f++++i   +d
    KKY15691.1 215 PYANGDLHVGHAVNKILKDIICRFQLSQGKRVEYVPGWDCHGLPIELKALEQHKKglkdqpfpsPteirqiaRRLAETTVERQKEQFRSWGIMadWD 311
                   9************************************************8765432223333223222111145778888999********962267 PP

                   EEEETTSHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG-E CS
  tRNA-synt_1g  87 kygrttseehkelvqeifkklkekgliyekeieqlycpkderflpdryve 136
                   +  +t ++e +    ++f  l+++gli++++  ++++p++ + l++ ++e
    KKY15691.1 312 NAWKTMDKEFELRQLSVFLSLYSQGLITRQHKPVYWSPSTLTALAEAELE 361
                   889999999999999************************99999988765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 8.9e-05
                   EEE.EEEEEE-GGGGHHHHHHHH.HH-TTSHHHHHHHH.HHHHT----EE-ESS-SSS-EETT CS
  tRNA-synt_1g 177 evketehlffklskfekklkewieeeekeleenvkkivkewlkegLkdlaisrdldwGipvPg 239
                   +++ t ++f ++++++ +  + + e+   l+   k+ +k++l++  ++++isr+  wG+p+P 
    KKY15691.1 584 VIRATAQWFADVHRIKYMAIQSL-EDVMFLPGTGKTRLKSFLEN-RSEWCISRQRAWGVPIPA 644
                   56777888888888887777777.55556777888889999988.89***************4 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.00097
                   EEEE--.EEE--------------HHHHH CS
  tRNA-synt_1g 315 vvahey.ltvegkKlSkSrgvvvkakeal 342
                   + +h++ l  +gkK+SkS g+v+ + ++l
    KKY15691.1 772 LLTHGFtLDAQGKKMSKSLGNVISPLQIL 800
                   67788856799************998776 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.1   1.8e-22   5.5e-19       2     148 ..     880    1037 ..     879    1041 .. 0.81

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 1.8e-22
  Anticodon_1    2 rwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedk.ra.aqevllevletllrllaPfmPfitEelwqr.... 91  
                   r + ++l ++ ++v +ay +++f+ka+s+l + +++d+++++le+vk+rly+++ +++ r  a ++ll  letl rll P++P + +e w +    
   KKY15691.1  880 RVLYKRLLHVENDVLAAYTNFEFHKAISRLTSYISHDFSSVFLESVKDRLYCDQLKSRtRLsALSLLLFNLETLQRLLGPICPLLVQETWAHtppl 975 
                   778999************************************************9999988899**************************999988 PP

  Anticodon_1   92 eeeelgkkesimlaewpe.kaeel.ekeleeeevellkeivkairk....lrselkikpssel 148 
                    ++++ ++    + e p+  ++e  +  + +e+++ll +++++i      +r+ + +  s++ 
   KKY15691.1  976 LKDSMTHPLLKAHDETPSpPSQEStTSSY-DEAWDLLMSLNSTIKPlqekAREAKHMTSSTQS 1037
                   66666666556677778644444454444.788888766666665433336677777766665 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.39   1.2e+03     257     296 ..     115     154 ..     112     158 .. 0.87
   2 !    5.5   0.0    0.0032       9.4      21      52 ..     219     250 ..     210     312 .. 0.87
   3 !    7.8   0.0    0.0006       1.8     242     268 ..     774     800 ..     757     829 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.39
                   TTT---BHHHHHTTS-HHHHHHHHHSS-TTS-EEE-HHHH CS
  tRNA-synt_1e 257 sLknfitikdvlkkfdprqlRllllsahyrsqldfkeell 296
                   s  n+++i  ++kk ++   Rl+  ++hy + + f  +++
    KKY15691.1 115 STVNMVLITTFMKKIKALRKRLVGGKEHYSESIPFLMKAM 154
                   5679**************************9999876665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0032
                   S--BHHHHHHHHHHHHHHHHHHHTT-EEEEEE CS
  tRNA-synt_1e  21 dashlGhaRslvafDilrrilqalgYdvqfvq 52 
                    + h+Gha + +  Di+ r+  ++g  v++v 
    KKY15691.1 219 GDLHVGHAVNKILKDIICRFQLSQGKRVEYVP 250
                   679*****************999*******95 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0006
                   EEE--EEETTBE--TTTT---BHHHHH CS
  tRNA-synt_1e 242 lhnghlkiegekmsksLknfitikdvl 268
                    h   l  +g+kmsksL+n+i+  ++l
    KKY15691.1 774 THGFTLDAQGKKMSKSLGNVISPLQIL 800
                   566678999***********9877766 PP

>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     5e-06     0.015      84     127 ..     460     505 ..     453     523 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5e-06
  tRNA-synt_1_2  84 ftglkaihPitgeki..piwvanyvlmeygtgavmavPahdqrDfe 127
                    ++g++   P+++++i  pi++a +v  + gtg v + P+h   D++
     KKY15691.1 460 EKGFTYRSPFDKSDIgrPIYTASFVTDSTGTGLVHCAPGHGMDDYN 505
                    67888999***999877************************99997 PP

>> Propep_M14  Carboxypeptidase activation peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0     1e-05     0.031      26      67 ..     823     862 ..     808     865 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1e-05
  Propep_M14  26 WkppsklgepvdilVppekledfeelLeslgisyevlieDvq 67 
                 W    +++ ++di+V+p+ ++++ +lL++l  +++++i ++ 
  KKY15691.1 823 WVA--SNDFTTDIVVSPQAVKNIHQLLHKLRTTFKMIIGNLS 862
                 553..345579*****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1256  (0.0700541); expected 358.6 (0.02)
Passed bias filter:                      663  (0.0369792); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.51
# Mc/sec: 7214.10
//
Query:       KKY15692.1  [L=305]
Description: putative opsin 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-47  161.7  18.4    2.7e-47  161.2  18.4    1.1  1  Bac_rhodopsin   Bacteriorhodopsin-like protein
     0.0032   16.8  10.3     0.0032   16.8  10.3    1.7  2  Heliorhodopsin  Heliorhodopsin
  ------ inclusion threshold ------
      0.052   13.2   4.5          4    7.0   2.4    2.5  2  SUR7            SUR7/PalI family
        0.1   13.1  11.9       0.33   11.4   5.6    2.4  2  MerC            MerC mercury resistance protein
        8.6    6.0   8.4         13    5.5   3.9    2.3  2  Tetraspanin     Tetraspanin family


Domain annotation for each model (and alignments):
>> Bac_rhodopsin  Bacteriorhodopsin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.2  18.4   7.5e-51   2.7e-47       4     218 ..      46     274 ..      44     277 .. 0.94

  Alignments for each domain:
  == domain 1  score: 161.2 bits;  conditional E-value: 7.5e-51
                    HHHHHHHHHHHHHHHHHHTTTSSTCCHHHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEETTEE..............EEEETHHHHHHHHHHHHHH CS
  Bac_rhodopsin   4 fsvfallalvatllfvvtsrrvkdgekrkllvipllitaiaavaYltmalglGltgveaefeh..............rqvfyarYidWllttPllv 85 
                    ++v  +l+ ++ l f ++  rv + +kr + + + +it +a+++Y+++a g G+t  ++   +              rqv++arY+dW +ttPll+
     KKY15692.1  46 LWVVVVLMGLSSLAFYGMALRV-PAQKRLFHILTAFITTFAFLSYFALATGDGITYHHFVKTEshkhglpdtyqdiyRQVYWARYVDWSITTPLLL 140
                    8********************7.6777****************************95553333667****************************** PP

                    HHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHT.SHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Bac_rhodopsin  86 lvlaelagadrrtllvlvladvvmivgglvgali.estyrwvyftisvaallvvlylllgelaraakslsserrslfntLrnlvvvlwilYpvawl 180
                    l+l++lag +  ++lv+v+ad++mi++gl +a+  ++ +rw++++ +++a+lv++y +  + +++++  +++++ +   +  +++vlw+lYp++w+
     KKY15692.1 141 LDLSLLAGLSGANILVAVVADLIMILTGLFAAFGsHKGQRWGWYAWACIAFLVIVYQIGFNGRKSVAGKNNKTKAFVISISTFTLVLWALYPIIWA 236
                    *********************************868889*********************************9999999***************** PP

                    HSTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHTT CS
  Bac_rhodopsin 181 lgeeGngiqpdveavvygilDlvtkvgfglillaaats 218
                    + ++   i++++e + y +lDl++k +fg+ ll ++++
     KKY15692.1 237 IADGARIINVNSEIIAYAVLDLLAKPVFGFWLLLTHDK 274
                    *9997777*************************99876 PP

>> Heliorhodopsin  Heliorhodopsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       0.3   1.1e+03      49     200 ..      71      92 ..      41     112 .. 0.53
   2 !   16.8  10.3     9e-07    0.0032      84     234 ..     118     265 ..      62     271 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.3
  Heliorhodopsin  49 eelfevelgvlvalFlllsalahlliatvlfkrYeenLkkginkfRWveyslsssiMivliallvGvldiaaliaifvlnaamilfGllmEkinq 143
                     + lf+                                                                                          
      KKY15692.1  71 KRLFH------------------------------------------------------------------------------------------ 75 
                     23333.......................................................................................... PP

  Heliorhodopsin 144 ttektnwlpfifGciagivpWivillyllaaeseeevPaFvyaivvslfvlfnlFal 200
                                                             +++ ++++f +   Fal
      KKY15692.1  76 ----------------------------------------ILTAFITTFAFLSYFAL 92 
                     ........................................33333344444444443 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 9e-07
  Heliorhodopsin  84 enLkkginkfRWveyslsssiMivliallvGvldiaaliaifvlnaamilfGllmEkinqttektnwlpfifGciagivpWivillyllaa..es 176
                     +++ +++  +R+v++s+++ ++++ ++ll+G++  + l+a+ v+  +mil Gl      +++++  w  + + cia +v    i ++  ++   +
      KKY15692.1 118 QDIYRQVYWARYVDWSITTPLLLLDLSLLAGLSGANILVAV-VADLIMILTGLFAAFGSHKGQR--WGWYAWACIAFLVIVYQIGFNGRKSvaGK 209
                     4677888889************************9999987.5799********9988887777..99999999999987777777776667788 PP

  Heliorhodopsin 177 eeevPaFvyaivvslfvlfnlFalnmllqykkvgkwkdylyGErvYivLSLvaKslLA 234
                     ++++ aFv+ i ++++vl  l+++  ++      +  +      +Y vL L+aK ++ 
      KKY15692.1 210 NNKTKAFVISISTFTLVLWALYPIIWAIADG--ARIINVNSEIIAYAVLDLLAKPVFG 265
                     99999******************98766432..2223333333567777777776665 PP

>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0026       9.3     119     173 ..      46     100 ..      32     120 .. 0.67
   2 ?    7.0   2.4    0.0011         4     117     158 ..     152     193 ..     141     256 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0026
        SUR7 119 hiialvlsfi.slvvgllaicvspdnsrllsflnlllsvlsflatllaalldtllf 173
                 +++ +vl+ + sl +  +a+ + p ++rl+ +l++++++++fl+ ++ a  d +++
  KKY15692.1  46 LWVVVVLMGLsSLAFYGMAL-RVPAQKRLFHILTAFITTFAFLSYFALATGDGITY 100
                 44444455552333344444.56899998888888999999998877666554444 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0011
        SUR7 117 ilhiialvlsfislvvgllaicvspdnsrllsflnlllsvls 158
                 + +++a+v+ +i++++gl+a + s++  r++    + +++l+
  KKY15692.1 152 ANILVAVVADLIMILTGLFAAFGSHKGQRWGWYAWACIAFLV 193
                 5679******************99999997333333333333 PP

>> MerC  MerC mercury resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.4    0.0074        27      35      77 ..      39      84 ..      10     114 .. 0.55
   2 ?   11.4   5.6   9.2e-05      0.33      16     101 ..     134     218 ..     132     241 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0074
        MerC 35 sellhqvllilvvaigllalv...vgyrrhrktsvlvlgalGllil 77
                se  h++l ++vv++gl +l+   ++ r   +++++ ++ + ++ +
  KKY15692.1 39 SETGHRTLWVVVVLMGLSSLAfygMALRVPAQKRLFHILTAFITTF 84
                4555555555555555444331112223333333333333333332 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 9.2e-05
        MerC  16 lllPvllallpllglsflasellhqvllilvvaigllalvvgyrrhrktsvlvlgalGllillvalflgteaeetl.lfgslwqvlt 101
                 + +P+ll+ l+ll+ +  a+ l+ +v+ ++++++gl+a +   ++ +++   +++++++l++++   ++ +  +++ + ++  ++++
  KKY15692.1 134 ITTPLLLLDLSLLAGLSGANILVAVVADLIMILTGLFAAFG-SHKGQRWGWYAWACIAFLVIVYQIGFN-GRKSVAgKNNKTKAFVI 218
                 679****9999998885557778888888888888888765.57899999**************99998.33333332222223333 PP

>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.021        74      54     127 ..      47     121 ..      35     133 .. 0.50
   2 ?    5.5   3.9    0.0035        13      52      96 ..     154     200 ..     125     255 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.021
                  XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HHH.........HHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
  Tetraspanin  54 ivvGvllfllgflGcig.alkenkcllltfsllllvlfllelaagilgfvfsdkargkv.seiinnaievkyrddl 127
                  + v v+l+ l+ l ++g al+      l+ +l  ++  +++l+  +l+     + ++ v +e+ ++ ++++y+d  
   KKY15692.1  47 W-VVVVLMGLSSLAFYGmALRVPAQKRLFHILTAFITTFAFLSYFALATGDGITYHHFVkTESHKHGLPDTYQDIY 121
                  3.33666677777777744443332222222333333333333222222222222222324567788887777765 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0035
                  .XXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin  52 llivvGv..llfllgflGcigalkenkcllltfsllllvlfllelaa 96 
                  +l++v +  +++l+g++  +g+ k +++     +++ +++++ ++++
   KKY15692.1 154 ILVAVVAdlIMILTGLFAAFGSHKGQRWGWYAWACIAFLVIVYQIGF 200
                  344444456*********************99999999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       767  (0.0427799); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 1968.78
//
Query:       KKY15693.1  [L=504]
Description: hypothetical protein UCRPC4_g06194 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-50  172.6   0.0    5.2e-33  114.9   0.0    3.1  2  UPF0183   Uncharacterised protein family (UPF0183)
  ------ inclusion threshold ------
       0.16   12.2   0.0       0.36   11.1   0.0    1.6  1  FF        FF domain


Domain annotation for each model (and alignments):
>> UPF0183  Uncharacterised protein family (UPF0183)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   0.0   5.8e-37   5.2e-33       6     259 ..       7     278 ..       4     284 .. 0.74
   2 !   52.1   0.0   6.9e-18   6.2e-14     256     390 .]     314     504 .]     308     504 .] 0.89

  Alignments for each domain:
  == domain 1  score: 114.9 bits;  conditional E-value: 5.8e-37
     UPF0183   6 vlGmplsqaiailksqestikkvellYsdkeplkvdivinlkedgirLiFdpvsQrLklIevydlkkvkLkYagkvf.nspsvkatieq.......... 93 
                  lG++l++++  lk q +++++++++Ys++ep+  ++v++l+ +girL+Fd+  QrL+l+ev d++k + +Y+g+ +  + +++ ++++          
  KKY15693.1   7 ALGASLHNILTRLKAQPTLYPNLDIAYSSSEPVIEPVVLTLPTNGIRLRFDGPDQRLRLVEVLDFTKTSFSYKGTDLvRHFKTAGDVSKeqeapqsgps 105
                 59**********************************************************************997541444444444445557778888 PP

     UPF0183  94 ....ienlfGaTypgey.......daekklyvlsyrGlsfefpiesevkslvskaekefgllslefpkgaspvvskviiydgsslk......kakaPsl 175
                      ++lfG+ ypgey       ++   +yvlsy+G++f+fp++++        ++      l  ++ a   +++++i++gss +       +++P+ 
  KKY15693.1 106 frhvYNRLFGPSYPGEYippgpkdKSGLGTYVLSYPGIAFSFPVQDSK------WSPDADFVALLSSSAAL-PAKSMAIFHGSSWSdarselYTQQPQF 197
                 88855679*****99885544432223469**************9933......33333345555555555.578899*****9996666664555666 PP

     UPF0183 176 Psscy....kkqlyleevevlldeektkglklvlvteeepkkstlkreikfgdst.qdvlseLGapskvfyksedkmkIHspsdarala 259
                 P +       k+++ +e+e  l +++    kl+++ +     ++    i++ ++t qd + eLG+p+ ++ k +dk+ IH  ++ ++l+
  KKY15693.1 198 PRAISlngrSKEVVADEIEQVLIKGN---GKLEVIRR-----NSPIFVIRLSETTpQDLVAELGPPDAIYRKYDDKIAIHGEQRGADLT 278
                 65322000033333333333333332...24554444.....56677899998777************************998877665 PP

  == domain 2  score: 52.1 bits;  conditional E-value: 6.9e-18
     UPF0183 256 ralatkrsdyFynYftlGldiLfdasth.......................rvkkfiLhtNlPghvnFniykrCefklvlsskakkekseeeektitae 331
                 ++++t + ++FynYf+ G+d L+                             v k++Lh N+Pg++ Fn+  r ++ + l +++++          t+e
  KKY15693.1 314 TNQHTVPVECFYNYFHHGFDALVSQPADkspafpageedknhqpsmttsqmVVTKILLHGNVPGSYPFNRHRRSRWVIDLATGEDD--------GLTSE 404
                 455678899**************87665678888888999999***999999****************************999843........79999 PP

     UPF0183 332 tkwdevkkalvkas.............ekpvvlnras..stntt..........................npfgstfiygyqdvifEvmkngaiasvtl 389
                 +++ e++ alv++              ++ +vlnr+   s +++                          +  g+t+ +g++++ fEv+kng +  +t+
  KKY15693.1 405 MPFPEISAALVDTWretyanreqerslQRGMVLNRGWgeSPDSSlellggweesggttgrmgpdplmdgvQGLGNTELFGFPGLLFEVLKNGTVSCLTV 503
                 **********998446888999999999999999988444444499****************************************************9 PP

     UPF0183 390 y 390
                 y
  KKY15693.1 504 Y 504
                 8 PP

>> FF  FF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     4e-05      0.36       5      45 ..     159     209 ..     157     211 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4e-05
                 HHHHHHHHCS.......SS-TTSSHHHHHHHC.TTSCCC.HHG.TSHHHHH CS
          FF   5 aFkeLLkehk.......eitpkstWseikkil.enDpRY.lal.ldkseRe 45 
                 +F +LL++          i + s+Ws+++++l  + p++ +a+ l+++++e
  KKY15693.1 159 DFVALLSSSAalpaksmAIFHGSSWSDARSELyTQQPQFpRAIsLNGRSKE 209
                 78888888885555555677777*******997888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 3133.87
//
Query:       KKY15694.1  [L=1210]
Description: putative kinesin family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   9.7e-109  363.3   1.5   2.6e-108  361.9   1.5    1.8  1  Kinesin        Kinesin motor domain
    7.9e-26   90.8   0.0    7.9e-26   90.8   0.0    3.3  4  Microtub_bd    Microtubule binding
    0.00012   22.5   2.4    0.00012   22.5   2.4    4.7  4  Microtub_bind  Kinesin-associated microtubule-binding
  ------ inclusion threshold ------
       0.27   11.3   0.0       0.27   11.3   0.0    4.9  5  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.9   1.5  5.7e-112  2.6e-108       1     333 []      65     397 ..      65     397 .. 0.95

  Alignments for each domain:
  == domain 1  score: 361.9 bits;  conditional E-value: 5.7e-112
                 EE-SSSHHHHTTTTEBCEEEECTCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC.... CS
     Kinesin   1 RvRplnekekeeeeeeeveveeekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk.... 95 
                 R+R ++++e +e++  +v+++  +k ++++     ++ ++k+++Fdkvf+++a+q+ ++e+++ p+++++l Gyn+tifaYGqtg+GKTyTm+g+    
  KKY15694.1  65 RCRGRSDREVRENSGVVVSTQ-GTKGKNVELIMGPNALSNKTYHFDKVFSPAADQSMIFEDVVTPILSEMLLGYNCTIFAYGQTGTGKTYTMSGDmtdt 162
                 99*********9999999887.7899999999******************************************************************* PP

                 ...TTTSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSC....CEEETTS--EEESSHHHHHHHHHH CS
     Kinesin  96 ...eeeeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkg....evyvkgltevevksaeevlellek 187
                     ++++Giipr+l +lF+++++e++    e+svk+s++E+Ynee++DLL+ +   ++ klki+eds+++     ++v+g++e ++k+a+  ++ll++
  KKY15694.1 163 mgiLSDNAGIIPRTLYSLFQKLENEEA----ECSVKCSFIELYNEELRDLLAAD---DSVKLKIYEDSNSKkghtATMVQGMEESHIKTANAGIKLLQQ 254
                 ***8889***************88654....69*******************99...34469*****99876677799********************* PP

                 HHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTSTSCGG CS
     Kinesin 188 geknrkvaetklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaekkkskhipYR 286
                 g+ +r+va+tk+n+ SSRSH+vftit   k+++e+ e+ + ++klnLvDLAGsE+++++g ae++r  Ea+ iNkSLl+Lgrvi+aL++k   +hipYR
  KKY15694.1 255 GSYRRQVAATKCNDLSSRSHTVFTITTYMKKTAETGEDFICAGKLNLVDLAGSENIQRSG-AENKRAAEAGLINKSLLTLGRVINALVDK--GSHIPYR 350
                 *******************************998888779********************.58999************************..******* PP

                 GSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 287 dSkLTrlLqdsLgGnsktlmivtvspssenleetlstlkfaerakei 333
                 +SkLTrlLqdsLgG++kt++i+t+sp+++nleet+stl++a rak+i
  KKY15694.1 351 ESKLTRLLQDSLGGRTKTCLIATLSPAKSNLEETISTLDYAFRAKNI 397
                 *********************************************98 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.0   1.8e-29   7.9e-26      21     149 .]      59     209 ..      53     209 .. 0.82
   2 ?   -3.4   0.1       1.8   8.1e+03      10      41 ..     470     501 ..     462     531 .. 0.63
   3 ?   -2.0   0.1       0.7   3.2e+03      44      78 ..     752     785 ..     720     800 .. 0.67
   4 ?   -1.8   0.1      0.59   2.6e+03      62      90 ..     863     891 ..     844     930 .. 0.69

  Alignments for each domain:
  == domain 1  score: 90.8 bits;  conditional E-value: 1.8e-29
                  B-EEEEEEECCCS-T......EEEETT..T............TTTEEEE-SEEEECTTHCCCCCCCCHH.HHHHHHTT--EEEEEEES.......... CS
  Microtub_bd  21 niRvfarvrpelesek.....akikfp..e.........eekkkkkefsFdrvfeseseqeevfeeisq.lvqsaldgynvcifaygqTGsGKtyTme 101
                  ni v +r+r ++++e      + ++++  +          +  ++k+++Fd+vf++ + q+++fe++   ++   l gyn++ifaygqTG GKtyTm+
   KKY15694.1  59 NIHVVVRCRGRSDREVrensgVVVSTQgtKgknvelimgPNALSNKTYHFDKVFSPAADQSMIFEDVVTpILSEMLLGYNCTIFAYGQTGTGKTYTMS 156
                  66666666666666544455544444433155677888866899**********************8651666677********************** PP

                  ..............ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd 102 g........eeeeagmipraveeifetiselkekgwkyeielqfveiynekvqDlL 149
                  g         +++ag ipr++ ++f++++++   +++ +++++f+e+yne+++DlL
   KKY15694.1 157 GdmtdtmgiLSDNAGIIPRTLYSLFQKLENE---EAECSVKCSFIELYNEELRDLL 209
                  *998888777899*************99998...799******************8 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.8
                  HCHHHHHHHCTB-EEEEEEECCCS-T.EEEET CS
  Microtub_bd  10 kleNtiqelkGniRvfarvrpelesekakikf 41 
                   l N++qel      f  +r+++es +++++ 
   KKY15694.1 470 SLRNKVQELFSLTSNFNHLRKDHESTRLALEN 501
                  56777777766666666666666665444443 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.7
                  ...TTTEEEE-SEEEECTTHCCCCCCCCHHHHHHH CS
  Microtub_bd  44 eekkkkkefsFdrvfeseseqeevfeeisqlvqsa 78 
                    ++ k++ + +rv ++++e + +fe +++lv+ +
   KKY15694.1 752 AANSLKNSLEVERV-QAQKERQGLFEKMQALVEES 785
                  55667777888887.45566777899999998755 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 0.59
                  THCCCCCCCCHHHHHHHHTT--EEEEEEE CS
  Microtub_bd  62 seqeevfeeisqlvqsaldgynvcifayg 90 
                  ++++ v+ee+ q+v+  ++++ v + a+ 
   KKY15694.1 863 TSTKAVHEETVQIVDAQIKDMAVQMAALD 891
                  46677777777777777777766655554 PP

>> Microtub_bind  Kinesin-associated microtubule-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   6.7      0.32   1.4e+03      28     113 ..     408     501 ..     401     549 .. 0.69
   2 ?   -2.5   0.5       1.4   6.1e+03      33      58 ..     594     619 ..     560     668 .. 0.63
   3 ?   -4.7   4.9         4   1.8e+04      77      77 ..     831     831 ..     718     911 .. 0.60
   4 !   22.5   2.4   2.7e-08   0.00012       2      36 ..     978    1012 ..     977    1029 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.32
  Microtub_bind  28 preellerfrqeqeeldaalti...ee....eeevsqdsleeeesie.tneslasekssidenlkcqesggvpffqrkkslkkdkenkavntle 113
                    +++ ll++f +e e+l+++l      +    ++e  +++  e es +   e+      +++++l  + ++  ++ ++ + l+kd e+   ++ +
     KKY15694.1 408 SKKTLLREFTAEIEKLKSELIAtrqRNgvylTNEQYEEMTVESESRRiLAEEQKARIETMEASLRNKVQELFSLTSNFNHLRKDHESTRLALEN 501
                    6789************999998765224344333333333344444445677777777778888888888888999999999999855433333 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.4
  Microtub_bind  33 lerfrqeqeeldaalti.......eeeeevsqd 58 
                    +e+f+ eq++ +a+l++       +       +
     KKY15694.1 594 IESFQVEQSQQLASLSSrvnafvaS-------E 619
                    4566666666666666533222221.......2 PP

  == domain 3  score: -4.7 bits;  conditional E-value: 4
  Microtub_bind  77 s 77 
                     
     KKY15694.1 831 I 831
                    1 PP

  == domain 4  score: 22.5 bits;  conditional E-value: 2.7e-08
  Microtub_bind    2 LkkdvpTGtTPqRkeylYPrtlvrtepreellerf 36  
                     + ++v+TG+TPq+++++YP+tl +t p  +  +++
     KKY15694.1  978 MAEYVSTGQTPQKRDWTYPNTLPKTIPSPKPETKL 1012
                     568**********************9976655555 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.5   6.6e+03      39      55 ..     377     393 ..     365     429 .. 0.49
   2 ?   -1.1   2.0      0.39   1.8e+03      72      94 ..     481     506 ..     454     544 .. 0.43
   3 ?    8.7   3.4   0.00037       1.7      22     139 ..     537     660 ..     524     661 .. 0.80
   4 ?   11.3   0.0   6.1e-05      0.27      17      89 ..     654     726 ..     644     743 .. 0.77
   5 ?    0.3   0.2      0.15   6.6e+02      38      72 ..     903     937 ..     841     979 .. 0.58

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.5
  Baculo_PEP_C  39 lldaietqLnalsedlk 55 
                   ++ ++e+++++l+ +++
    KKY15694.1 377 AKSNLEETISTLDYAFR 393
                   33333333333333332 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.39
  Baculo_PEP_C  72 Ltdalnalq...dtlrneLtnlnsil 94 
                   Lt+  n+l    ++ r +L+n++ +l
    KKY15694.1 481 LTSNFNHLRkdhESTRLALENTEDVL 506
                   33333333333333333333333332 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00037
  Baculo_PEP_C  22 LnairlqnvqilaqlatlldaietqLnalsedlksllaeldt....rldtlltnLtdalnalqdtlrneLtnlnsiltnL.lssvtNinstLnnllq 113
                   L+++  q++++++   ++ld ++++L    +dl++l +e  +    ++ + +  +++++ ++q + +++L +l s ++   +s+v   +s+ + l++
    KKY15694.1 537 LQTLSKQLISTVGHSVKDLDGVHSKLRR-RSDLHALNKENWEatssKVVNISRLVDSTIESFQVEQSQQLASLSSRVNAFvASEVQHAESAQQDLIA 632
                   5666666666666666666777777766.56677666554335666999999999********999************962678************* PP

  Baculo_PEP_C 114 alnnl..dlgalsqeledaldtveeile 139
                   +++ +  ++++++q++ ++ d+++e+le
    KKY15694.1 633 DVAKFeeTHDGITQQGVKSRDDMNEVLE 660
                   *****8889*******999999999987 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 6.1e-05
  Baculo_PEP_C  17 dLtnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtn 89 
                   d+++vL+ i+ +  ++ +q+ + l+ +      +s ++ + l +++++l+++ + L +  +++ +tl +++++
    KKY15694.1 654 DMNEVLEEIKVLREEVKTQVGEGLNGLSAAAARISGEVIAELDQFHAQLHSSYSSLGRDFKSIFETLVQHIQA 726
                   7888888888888888888888888888888888888888888888888888888887777777777766654 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.15
  Baculo_PEP_C  38 tlldaietqLnalsedlksllaeldtrldtlltnL 72 
                   ++ +  ++ L+ lse+++++ ++++t+++t+++++
    KKY15694.1 903 EQHEIRARGLELLSENVRAMHKKISTQFKTSSERM 937
                   33444444455555555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1824  (0.101735); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.08u 0.37s 00:00:01.45 Elapsed: 00:00:00.56
# Mc/sec: 6508.93
//
Query:       KKY15695.1  [L=439]
Description: putative anaphase promoting complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.51
# Mc/sec: 2589.77
//
Query:       KKY15696.1  [L=315]
Description: putative amp-binding [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-32  110.9   0.0      7e-32  110.6   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    2.5e-14   54.0   0.1      8e-14   52.4   0.0    1.8  2  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.0   7.8e-36     7e-32     252     405 ..       8     180 ..       2     211 .. 0.84

  Alignments for each domain:
  == domain 1  score: 110.6 bits;  conditional E-value: 7.8e-36
                  HT-SEEEEEHHHHHHHHH.CCCHH.C....HHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTC.EEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE CS
  AMP-binding 252 lkvtviagvPrvlealle.sgalk.a....akkakdlsslrlvllggeplspellrffralfge.evlegYGlTEttgvvtvlpleedkkklgsvGkp 342
                    +t++++vP+++ +l++ + +l  +    a++a +  +lrl ++g ++l+  +  ++++l ++  +le YG+TE +++++ + l+ + ++ gsvG+p
   KKY15696.1   8 KPITFFTAVPTIYTRLMStHTELPrEvqdvARTAISPDHLRLNISGSAALPTPIKSAWEDLSKGnILLERYGMTEIGMAIS-CGLDFKSRVNGSVGWP 104
                  569*************88777777446655555556678***9******************999889*************9.4556666799****** PP

                  -TTEEEEEE-TTTSCBEE.........TTSE..EEEEEEETTS-SEBTT-HHHHHHHEEE...T.CCEEEEEEEEEEE CS
  AMP-binding 343 lpgvevkivDeetgepvp.........dgee..GellvrgpgvmkgYlkkpeataeafds...e.grwlrTGDlgrld 405
                  lp vev++vD +t e ++         +     Ge++v+gp+v++ Y+++++at++ f++   + g+w++TGD++ ++
   KKY15696.1 105 LPSVEVRLVDLDTHEVIGlgdeidaegR--LreGEIHVKGPTVFSEYWNNEAATSKEFVDdpdGnGKWFKTGDVASRQ 180
                  *************999997777665444..166**************************87763345********975 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.77   6.9e+03      39      56 ..      27      44 ..       8      49 .. 0.67
   2 !   52.4   0.0   8.9e-18     8e-14       1      76 []     220     303 ..     220     303 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.77
                   ---HHHHHHHHHHHHT-T CS
  AMP-binding_C 39 sealeeeLkahvrkelgp 56
                   +++l++e+++ +r+++ p
     KKY15696.1 27 HTELPREVQDVARTAISP 44
                   344788888888888766 PP

  == domain 2  score: 52.4 bits;  conditional E-value: 8.9e-18
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE------........HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsea........leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    evE  l+s p++aeaaVvG + e +G+ +va+Vvl++ ++            + ++ ++++lg+++ p+++++vd +p+++ GK
     KKY15696.1 220 EVERELLSLPQIAEAAVVGLDSEQWGQKVVAIVVLRESQKNtgrggkswGVMDMRRALKDRLGAVKLPSEMKLVDVIPRNAMGK 303
                    8**********************************753211234455566799999*************************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2304.25
//
Query:       KKY15697.1  [L=316]
Description: putative snare domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-16   58.4   8.2    7.7e-16   58.4   8.2    2.0  2  Syntaxin       Syntaxin
    7.2e-08   32.3  12.1    7.2e-08   32.3  12.1    2.7  2  SNARE          SNARE domain
     0.0016   18.2   5.9     0.0044   16.8   5.9    1.6  2  Use1           Membrane fusion protein Use1
  ------ inclusion threshold ------
      0.017   14.8   0.6        0.1   12.3   0.1    2.2  2  RPW8           Arabidopsis broad-spectrum mildew resistance p
      0.023   14.8   3.5      0.067   13.3   3.4    2.0  1  MCU            Mitochondrial calcium uniporter
      0.027   14.5   8.8       0.09   12.8   0.2    2.3  2  Laminin_II     Laminin Domain II
      0.042   14.3   5.4        3.4    8.2   2.4    3.0  2  Spectrin       Spectrin repeat
      0.072   12.7   0.3       0.33   10.5   0.1    2.0  2  EVI2A          Ectropic viral integration site 2A protein (EV
        0.1   12.9   1.5       0.21   11.9   0.8    1.8  1  Orf78          Orf78 (ac78)
       0.11   12.1   0.3       0.11   12.1   0.3    2.1  2  Baculo_11_kDa  Baculovirus 11 kDa family
       0.12   12.8   0.5       0.22   12.0   0.5    1.3  1  DUF805         Protein of unknown function (DUF805)
       0.18   11.9   2.7       0.54   10.3   0.3    2.6  2  COG2           COG (conserved oligomeric Golgi) complex compo
       0.19   12.1   2.4       0.24   11.8   0.7    1.9  2  BatA           Aerotolerance regulator N-terminal
       0.57    9.6   2.3          1    8.8   0.1    2.0  2  Allexi_40kDa   Allexivirus 40kDa protein
        1.2    7.9   9.4        4.3    6.1   9.4    1.7  1  LMBR1          LMBR1-like membrane protein
        1.9    8.2   5.3        9.7    5.9   0.0    3.6  4  Vac_Fusion     Chordopoxvirus multifunctional envelope protei
        1.9    9.0   8.4        1.3    9.5   0.1    3.2  3  GPS2_interact  G-protein pathway suppressor 2-interacting dom
          2    9.0   9.6       0.69   10.4   0.7    2.9  2  NPV_P10        Nucleopolyhedrovirus P10 protein
        6.8    6.6  12.0        1.4    8.8   8.1    2.0  1  Synaptobrevin  Synaptobrevin
        9.7    6.3  14.1       0.11   12.5   3.0    2.8  2  DHR10          Designed helical repeat protein 10 domain


Domain annotation for each model (and alignments):
>> Syntaxin  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   8.2   8.6e-19   7.7e-16       3     194 ..      60     245 ..      59     251 .. 0.89
   2 ?   -3.0   0.1       5.5   4.9e+03      10      24 ..     256     270 ..     252     287 .. 0.48

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 8.6e-19
    Syntaxin   3 effkeveeikkeiekleeevkklkkqneesktstraksvk.lkkrmesdikeikkraesvkarLeaLdksnkenekksgegsavdRirksqtaaLrkkl 100
                 +++++ +e+ + ++ +++++++l++ + +s++ t+ +s   + +++e+++ +i+++ + + +r++a++ + ++ +          R    q+  + ++l
  KKY15697.1  60 QILEDCREVDRGVDLVDQKLEQLRQLQAQSLNETDVSSNSpVAREIERIMVDIETTYRGLISRMKAIKSQPESGN---------PRN-APQVGRVDRRL 148
                 689999*******************************99999**********************99988776544.........332.34556667788 PP

    Syntaxin 101 kevmteynelrekireeykerieRrlevtGkevseeeieelietge.sevflqkllqeq.rga.realseieeRhkevlelekslkeLhqlFldmav 194
                 +++++   +lr + ++++ke+ eR + ++  ++s+ e+ e  e+ +  +vf+q +l+   rg+ ++al+ +++Rh++++++e+ +  L qlF d+  
  KKY15697.1 149 RDAVQRNMQLRRDYEKRCKEQFERNYRIVRPQASDAEVREAAEDPSnTQVFSQAMLSSDrRGQaQSALQAVRSRHDAIQKVERDIITLAQLFQDLEQ 245
                 888888899******************************999986538888898888888*********************************9865 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.5
    Syntaxin  10 eikkeiekleeevkk 24 
                 +i+++ e+++++v+k
  KKY15697.1 256 QIEQKGEEVNDNVSK 270
                 333333333333333 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       6.9   6.2e+03      18      29 ..     142     153 ..     140     156 .. 0.61
   2 !   32.3  12.1     8e-11   7.2e-08       5      53 .]     256     304 ..     252     311 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.9
                 HHHHHHHHHHHH CS
       SNARE  18 eraqkeLkkavk 29 
                  r+ ++L+ av+
  KKY15697.1 142 GRVDRRLRDAVQ 153
                 456666666665 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 8e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXXXXX CS
       SNARE   5 rIdtnVenaqsnveraqkeLkkavkyqksnRklkciillilviillvvl 53 
                  I+++ e++++nv+++++eL+ av +++ +R++k+ +lli+++i++v++
  KKY15697.1 256 QIEQKGEEVNDNVSKGNQELNVAVDKARAARRKKWWCLLICLLIIIVII 304
                 699999***************************************9996 PP

>> Use1  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.5   1.4e+03     185     213 ..      60      88 ..      49     101 .. 0.71
   2 !   16.8   5.9   4.9e-06    0.0044      91     242 ..     156     310 ..      75     313 .. 0.57

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.5
        Use1 185 iikkDtetlsksekaadqnlaslkkeser 213
                  i +D   +++ + ++dq l++l + +++
  KKY15697.1  60 QILEDCREVDRGVDLVDQKLEQLRQLQAQ 88 
                 56677777888888888888888765544 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 4.9e-06
        Use1  91 eskeekeeskereeaskelrqkekakyqkelrkellgkndsssspekekeskkk...............ksdedldavlkkhenlqEklaeemlsLarn 174
                  + +   e++ +e+  ++ r  + +++++e+r+   +                +                +++++ ++++  ++   k+  ++++La+ 
  KKY15697.1 156 MQLRRDYEKRCKEQFERNYRIVRPQASDAEVREAAEDP---------------SntqvfsqamlssdrrGQAQSALQAVRSRHDAIQKVERDIITLAQL 239
                 22222222333333333333344444444444444333...............13344444444445565556666666666666669********987 PP

        Use1 175 LK...enslaasqiikkDtetlsksekaadqnlaslkkeserleehskskvkcllwlllfvvlvvFismvl 242
                 +    +   + +  + + ++  ++    + +  ++l+ + +++   +++k+ cll+ ll++++++ i +++
  KKY15697.1 240 FQdleQAVAIQEPAVAQIEQKGEEVNDNVSKGNQELNVAVDKARAARRKKWWCLLICLLIIIVIIVIVVIV 310
                 65110333444445666666666666666666677888899999999999999999999999999888876 PP

>> RPW8  Arabidopsis broad-spectrum mildew resistance protein RPW8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.73   6.6e+02      65     119 ..     105     160 ..      90     174 .. 0.66
   2 ?   12.3   0.1   0.00011       0.1      12      76 ..     218     283 ..     214     290 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.73
        RPW8  65 ieeLkklLeka.ekLVekcsklkrynvlkkyrYkkklkeLekslrkfvqvelqvqq 119
                 ie+++  +e     L+++   +k+      +r + ++  ++  lr+ vq+++q+ +
  KKY15697.1 105 IERIMVDIETTyRGLISRMKAIKSQPESGNPRNAPQVGRVDRRLRDAVQRNMQLRR 160
                 55555555544123666666666666666666666777788888888888888765 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00011
        RPW8  12 algellkaileakkksldfksilkrLestleritPvvkeieklnkel.drpreeieeLkklLekae 76 
                 a+++ ++ai ++++   + +  +++Le+ +   +P v++ie+  +e+ d+  +  +eL+   +ka 
  KKY15697.1 218 AVRSRHDAIQKVERDIITLAQLFQDLEQAVAIQEPAVAQIEQKGEEVnDNVSKGNQELNVAVDKAR 283
                 567889*****************************************9999999999998888875 PP

>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   3.4   7.5e-05     0.067      26     106 ..     214     304 ..      70     308 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.5e-05
                 X.............XXXXXXXXXXXXXXXXX-SSSSSSTSSSSSHHHHHHHHHHHHH-SHHHHHHHHTCCCGGGCHHHHGGGHHHHHHHHTHHH CS
         MCU  26 e.............eeakvllrvkqlvkalesalnveeeqlkkereleekleelreelepleekkeeidekAerrtrrllwagLallavqlgil 106
                 +             + ++++ ++ ql ++le+a+ ++   +  ++++e+k ee+++++++ +++ +   +kA++ +r+ +w+ L++l + + i+
  KKY15697.1 214 SalqavrsrhdaiqKVERDIITLAQLFQDLEQAVAIQ---EPAVAQIEQKGEEVNDNVSKGNQELNVAVDKARAARRKKWWCLLICLLIIIVII 304
                 0444444445444433566677778888888888666...677788899999999*****************************9999887776 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2    0.0001      0.09       8      84 ..      61     132 ..      56     154 .. 0.80
   2 ?    4.4   3.6     0.038        34       5      75 ..     212     282 ..     208     289 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.0001
                 XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH CS
  Laminin_II   8 anetakevleqlaplsqnlentke.klseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleea 84 
                 ++e   ev + +  ++q+le++++ +++++n++      +v++ + + r+ +r ++++e +   L++++k +k + e 
  KKY15697.1  61 ILEDCREVDRGVDLVDQKLEQLRQlQAQSLNET------DVSSNSPVAREIERIMVDIETTYRGLISRMKAIKSQPES 132
                 556666777777777777777766456666666......99********************************98664 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.038
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGH CS
  Laminin_II   5 aaeanetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldkl 75 
                 a++a++ + +  + +++++ ++  + +  + +++ v+  +  v +  +  ++++++v+k ++++++ +dk 
  KKY15697.1 212 AQSALQAVRSRHDAIQKVERDIITLAQLFQDLEQAVAIQEPAVAQIEQKGEEVNDNVSKGNQELNVAVDKA 282
                 77888888888888889999999999999999999888888999999999999999999999999988885 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.032        29      30      98 ..      52     125 ..      45     129 .. 0.76
   2 ?    8.2   2.4    0.0038       3.4      36      79 ..     233     276 ..     200     288 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.032
                 SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTH.....HHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  30 gkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsas.....eeieerleelnerWeeLkelaae 98 
                 g+ +++  + l++++++ + ++  + ++++l +l+ + l+e + +s      eie  + ++++ ++ L +++++
  KKY15697.1  52 GNRPTNPNQILEDCREVDRGVDLVDQKLEQLRQLQAQSLNETDVSSnspvaREIERIMVDIETTYRGLISRMKA 125
                 67778888999999999999999999999999766665444433333455599999999999999999887765 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0038
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHH CS
    Spectrin  36 vqallkkhkaleaelaaqqervkalnelaeklldeghsaseeie 79 
                 + +l + +++le+ +a q++ v ++++ +e++ d+  + ++e++
  KKY15697.1 233 IITLAQLFQDLEQAVAIQEPAVAQIEQKGEEVNDNVSKGNQELN 276
                 55677789999********************9999988888776 PP

>> EVI2A  Ectropic viral integration site 2A protein (EVI2A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.58   5.2e+02      43     101 ..      83     143 ..      73     176 .. 0.63
   2 ?   10.5   0.1   0.00037      0.33      64     151 ..     218     309 ..     178     314 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.58
       EVI2A  43 iqnktngrnksensntnpvtpevdkkskstetletetsspsvsl..apkseeelttpsvvr 101
                  q ++++ n+++ s+++pv++e++    ++et+     s++ ++   p+s +  + p+v r
  KKY15697.1  83 RQLQAQSLNETDVSSNSPVAREIERIMVDIETTYRGLISRMKAIksQPESGNPRNAPQVGR 143
                 5667778899999999999999998887777666555555544410344445555555555 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00037
       EVI2A  64 evdkkskstetletetsspsvslapk.seeelttpsvvrnsssttqstentsksksei...fKkevCeennnkmamLiCliiiAvLfLiCtl 151
                 +v  ++ +++++e ++ +    +    +   ++ p+v++   +  +  +n sk+++e+   + k      ++   +LiCl+ii v+++i ++
  KKY15697.1 218 AVRSRHDAIQKVERDIITLAQLFQDLeQAVAIQEPAVAQIEQKGEEVNDNVSKGNQELnvaVDKARAARRKKWWCLLICLLIIIVIIVIVVI 309
                 444445566666666554444444330233456677777778888888999999888522233444455556679********999999765 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.8   0.00023      0.21      39      83 ..     265     310 ..     243     314 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00023
       Orf78  39 ekksaaeknditekesn.aaekaqalnillisllavvcvlvllyvi 83 
                 +++ ++ +++++ + ++  a ++++  +lli ll +++++v++ ++
  KKY15697.1 265 NDNVSKGNQELNVAVDKaRAARRKKWWCLLICLLIIIVIIVIVVIV 310
                 2222222222222222223445666677777777777777777665 PP

>> Baculo_11_kDa  Baculovirus 11 kDa family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       2.4   2.2e+03      23      36 ..     149     162 ..     140     175 .. 0.70
   2 ?   12.1   0.3   0.00012      0.11      37      60 ..     292     314 ..     257     316 .] 0.73

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.4
  Baculo_11_kDa  23 eqlvsrNrsflrdF 36 
                       v+rN ++ rd+
     KKY15697.1 149 RDAVQRNMQLRRDY 162
                    55566666666665 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00012
  Baculo_11_kDa  37 vLvicglvvfvvivlfilLlvvil 60 
                     L+ic l+ ++vi++ ++++v ++
     KKY15697.1 292 CLLICLLI-IIVIIVIVVIVVEVT 314
                    56666555.555556666677665 PP

>> DUF805  Protein of unknown function (DUF805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   0.00024      0.22       5      34 ..     281     310 ..     277     315 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00024
      DUF805   5 kGRasRsefwwfvlfllllvivlallaavl 34 
                 k Ra R++ ww++l++ll++iv+ +++ ++
  KKY15697.1 281 KARAARRKKWWCLLICLLIIIVIIVIVVIV 310
                 678888888888888888888877776655 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.66     6e+02      91     113 ..      67      89 ..      47     129 .. 0.58
   2 ?   10.3   0.3    0.0006      0.54      59     117 ..     235     295 ..     220     307 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.66
        COG2  91 klsereeeveskleeakeleekr 113
                 ++++    v++kle+ ++l++++
  KKY15697.1  67 EVDRGVDLVDQKLEQLRQLQAQS 89 
                 44444445555555555544443 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0006
        COG2  59 slSghLvglqeeleevesplaaarkkvesvreklsereeeveskleeakeleekr..ellk 117
                  l +  ++l++++   e  +a++ +k e+v++++s+  +e++  +++a+++++k+   ll 
  KKY15697.1 235 TLAQLFQDLEQAVAIQEPAVAQIEQKGEEVNDNVSKGNQELNVAVDKARAARRKKwwCLLI 295
                 5666667888899888999**********************************99643333 PP

>> BatA  Aerotolerance regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       3.9   3.5e+03      41      64 ..     216     239 ..     198     241 .. 0.81
   2 ?   11.8   0.7   0.00027      0.24      47      73 ..     281     306 ..     272     308 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.9
        BatA  41 leevekdeealqrlkknllllLrl 64 
                 l++v+ +  a+q+  ++++ l +l
  KKY15697.1 216 LQAVRSRHDAIQKVERDIITLAQL 239
                 566777777789999999998887 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00027
        BatA  47 deealqrlkknllllLrllalallvla 73 
                 + +   r+kk++ ll+ ll+++++++ 
  KKY15697.1 281 KAR-AARRKKWWCLLICLLIIIVIIVI 306
                 333.48******************985 PP

>> Allexi_40kDa  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1    0.0011         1      76     156 ..      58     138 ..      44     178 .. 0.58
   2 ?    0.5   0.4      0.39   3.5e+02      75     133 ..     221     260 ..     184     288 .. 0.47

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0011
  Allexi_40kDa  76 qttlLselrda...lrtltklldklksvekklelsaetasdskllkklesietsleelhakldelsssetsesegPsssptkas 156
                    ++ L + r+    +  ++++l++l++++ ++ ++++  s+s +++++e i  ++e+  +    l+s ++  +++P+s +  ++
    KKY15697.1  58 PNQILEDCREVdrgVDLVDQKLEQLRQLQAQSLNETDVSSNSPVAREIERIMVDIETTYR---GLISRMKAIKSQPESGNPRNA 138
                   455555555541114556677777777777777777777777777777665544443333...334444444444443333332 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.39
  Allexi_40kDa  75 sqttlLselrdalrtltklldklksvekklelsaetasdskllkklesietsleelhak 133
                   s+   ++++  ++ tl +l+++l++    +                   e  + ++ +k
    KKY15697.1 221 SRHDAIQKVERDIITLAQLFQDLEQAVAIQ-------------------EPAVAQIEQK 260
                   222222222333333333333332222222...................2222222222 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   9.4    0.0048       4.3     220     375 ..     123     315 ..      56     316 .] 0.49

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0048
       LMBR1 220 e......................reledllkevkklrksisesdplrkyleeilk..................kvPeeiaeklks.............. 264
                                        r+l+d +++ ++lr+ +++  +         +                             +              
  KKY15697.1 123 MkaiksqpesgnprnapqvgrvdRRLRDAVQRNMQLRRDYEKRCK---------EqfernyrivrpqasdaevR----------Eaaedpsntqvfsqa 202
                 033333333333333333333333333333333333333322221.........12222222222332222220..........123334444444444 PP

       LMBR1 265 .......nenkteeslaklekqlikalqkrertekqwkrllekaleledii.knksskekefkssessrrgefakqgklkltptleyywaklllplvll 355
                        ++ +++ + ++++++ i+++++   t +q+ + le+a+++++ +  + ++k +e++++ s+ ++e+   ++ k +   +  w +ll      
  KKY15697.1 203 mlssdrrGQAQSALQAVRSRHDAIQKVERDIITLAQLFQDLEQAVAIQEPAvAQIEQKGEEVNDNVSKGNQELNVAVD-KARAARRKKWWCLLI----- 295
                 555666544444555555555777788888888888888888888887644044455556777776633333333332.234444555666655..... PP

       LMBR1 356 ilsiilvllsiiiilseltk 375
                 +l ii+v+++i++i++e+tk
  KKY15697.1 296 CLLIIIVIIVIVVIVVEVTK 315
                 77777788888888878875 PP

>> Vac_Fusion  Chordopoxvirus multifunctional envelope protein A27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.79   7.1e+02      18      42 ..      60      84 ..      56      88 .. 0.89
   2 ?    0.1   0.0      0.72   6.4e+02       3      25 ..     103     125 ..     101     129 .. 0.70
   3 ?    0.0   0.5      0.75   6.7e+02       2      30 ..     148     176 ..     147     178 .. 0.75
   4 ?    5.9   0.0     0.011       9.7       2      36 ..     226     260 ..     225     268 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.79
                HHHHHHHHHHHHHHHHH-XXXXXXX CS
  Vac_Fusion 18 lvikcckrvnealkRlEnHleTlRk 42
                ++ + c++v+  ++ + + le lR+
  KKY15697.1 60 QILEDCREVDRGVDLVDQKLEQLRQ 84
                78999********999999999996 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.72
                 HHHHHHHHHHHHHHHHHHHHHHH CS
  Vac_Fusion   3 kdleerllvlekdfqlvikcckr 25 
                 +++e+ ++ +e+ +  +i+++k 
  KKY15697.1 103 REIERIMVDIETTYRGLISRMKA 125
                 56666677788888888887775 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.75
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Vac_Fusion   2 lkdleerllvlekdfqlvikcckrvneal 30 
                 l+d ++r ++l  d+++  k++ + n ++
  KKY15697.1 148 LRDAVQRNMQLRRDYEKRCKEQFERNYRI 176
                 78889999999999998877776666665 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-X CS
  Vac_Fusion   2 lkdleerllvlekdfqlvikcckrvnealkRlEnH 36 
                 ++++e+ +++l+++fq++++   +++ a+  +E+ 
  KKY15697.1 226 IQKVERDIITLAQLFQDLEQAVAIQEPAVAQIEQK 260
                 7899******************9999999999975 PP

>> GPS2_interact  G-protein pathway suppressor 2-interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1    0.0015       1.3      30      66 ..      59      96 ..      46     120 .. 0.82
   2 ?   -0.8   0.3       2.3   2.1e+03      36      55 ..     141     160 ..     139     202 .. 0.51
   3 ?    3.2   0.4      0.14   1.2e+02      43      67 ..     226     250 ..     213     277 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0015
  GPS2_interact 30 deLlqnidkvDREiakveqqiskLkkkqke.leeeaak 66
                   +++l++   vDR +  v+q++++L++ q + l+e  ++
     KKY15697.1 59 NQILEDCREVDRGVDLVDQKLEQLRQLQAQsLNETDVS 96
                   577888999*****************998878776655 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.3
  GPS2_interact  36 idkvDREiakveqqiskLkk 55 
                    + +vDR +  + q   +L++
     KKY15697.1 141 VGRVDRRLRDAVQRNMQLRR 160
                    67788776554444444443 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.14
  GPS2_interact  43 iakveqqiskLkkkqkeleeeaakp 67 
                    i kve++i  L +  ++le++ a  
     KKY15697.1 226 IQKVERDIITLAQLFQDLEQAVAIQ 250
                    7889999999999999999875543 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.7   0.00077      0.69       8      36 ..      60      87 ..      59     129 .. 0.77
   2 ?    1.8   2.5      0.38   3.4e+02      26      58 ..     215     247 ..     206     281 .. 0.49

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00077
     NPV_P10  8 vIradikavddkVdalqqqvddvqenlpd 36
                +I++d ++vd  Vd ++q+++++++ l+ 
  KKY15697.1 60 QILEDCREVDRGVDLVDQKLEQLRQ-LQA 87
                8*******************77765.333 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.38
     NPV_P10  26 qvddvqenlpdvtelnekLdaqsaqLaeletkv 58 
                 +++ v++ +  +++++  +  +++  ++le++v
  KKY15697.1 215 ALQAVRSRHDAIQKVERDIITLAQLFQDLEQAV 247
                 333344444444444444444444444443332 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   8.1    0.0015       1.4      52      84 ..     280     310 ..     223     315 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0015
                    HHHHHHHHHHHHHTXXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin  52 kqarklkrkmwwknmkliiililvvlililiii 84 
                     +ar  +rk ww  + +  +li++v+i+i++i+
     KKY15697.1 280 DKARAARRKKWWCLLIC--LLIIIVIIVIVVIV 310
                    58899999999976633..33333333333333 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   3.3       3.7   3.3e+03      27      67 ..      87     127 ..      63     172 .. 0.59
   2 ?   12.5   3.0   0.00012      0.11      15      70 ..     213     268 ..     202     288 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.7
       DHR10  27 alqvvekdlrsciklleeieaelakleeakkklkelrdale 67 
                 a +  e+d++s   ++ eie+ +   e++ + l + ++a++
  KKY15697.1  87 AQSLNETDVSSNSPVAREIERIMVDIETTYRGLISRMKAIK 127
                 44445566666666666666655555555555555555444 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00012
       DHR10  15 Erkarelqakidalqvvekdlrsciklleeieaelakleeakkklkelrdaleeke 70 
                 +   ++++ ++da+q+ve+d+  + +l +++e+ +a +e a +++++  ++++++ 
  KKY15697.1 213 QSALQAVRSRHDAIQKVERDIITLAQLFQDLEQAVAIQEPAVAQIEQKGEEVNDNV 268
                 55678999****************************99999999988888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2109  (0.117631); expected 358.6 (0.02)
Passed bias filter:                     1062  (0.0592336); expected 358.6 (0.02)
Passed Vit filter:                       163  (0.00909142); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:00.51
# Mc/sec: 1878.57
//
Query:       KKY15698.1  [L=489]
Description: putative nicotinate phosphoribosyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-57  192.4   0.4    2.1e-30  106.1   0.6    2.1  2  NAPRTase    Nicotinate phosphoribosyltransferase (NAPRTase) f
    6.7e-37  126.7   0.1    1.2e-36  125.9   0.1    1.4  1  NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N


Domain annotation for each model (and alignments):
>> NAPRTase  Nicotinate phosphoribosyltransferase (NAPRTase) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.0   1.2e-27   1.1e-23       2     108 ..     180     292 ..     179     298 .. 0.96
   2 !  106.1   0.6   2.4e-34   2.1e-30      96     237 ..     333     469 ..     324     473 .. 0.92

  Alignments for each domain:
  == domain 1  score: 84.1 bits;  conditional E-value: 1.2e-27
                 SEEE-TSTTSSSHHHHHHHHHHHHH........HHTTTEEEESBHHHHHHHT--B--HHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHC.CHIIE CS
    NAPRTase   2 klhDFGtRrrsslesqeivvkalkk........ahlvnflGtdnvlaaakysikaaetsahealgkeqelsafrnnlkqfqkdaldlwvaiek.gnlgi 91 
                  l++FG+Rrr++++++++++k+l +        +  + f Gt+nv++a+ky++ +++t+ahe++++ ++++    ++++++++al  w+ +++ g lgi
  KKY15698.1 180 LLSEFGSRRRRDYKTHDLIMKGLCQasqeakvaGWTGKFAGTSNVHFANKYGVAPVGTVAHEWYMGIAAITD---DYEHANEKALSYWLGCFGeGVLGI 275
                 589**********************999999988999**********************************9...*****************989**** PP

                 EECHCCTHHHHHCCS-C CS
    NAPRTase  92 aLtdlvltdaflkdfrl 108
                 aLtd+++t +f k+f+ 
  KKY15698.1 276 ALTDTFGTPDFFKSFKM 292
                 **************985 PP

  == domain 2  score: 106.1 bits;  conditional E-value: 2.4e-34
                 CCTHHHHHCCS-CCHHHSEEEEE-SS-HHHHHHHHHHHHHCTCTTTCCCSEEEEESS-SHHHHHHHHHHHHHTTCEEEEEESHHHHSSECTTCTTTCCE CS
    NAPRTase  96 lvltdaflkdfrleakaylgvRpDSGdpvevieklaahygstlnskgytkrlifsDgldvekiieilealkkkgfniaFGiGtnltqdlnrdtlefavk 194
                 ++ +d  +kdf+ +a++++gvR+DSGdp ++++ + + y s+ ++k  +k+++fsD+l+ e++ie+ + ++++gf  +FG+Gt +t+d+ r  ++   k
  KKY15698.1 333 QLDADFSKKDFKSYAQVFTGVRQDSGDPKDYVKMARQFYDSV-GIKE-KKVIVFSDSLNTERCIEYKKVAEENGFIPSFGVGTFFTNDFVR--KSDGKK 427
                 556677889********************************9.9987.6899***************************************..88899* PP

                 EEEEEEEEEEEEETTEETTBGGSSCCGSBGSGHHHHHHHHHHC CS
    NAPRTase 195 asalniviklvevnkdpvakisdrskkgrlgdkefvkllrtvf 237
                 + +lnivik+  + ++p++kisd+++k++ gd+++v+ +++++
  KKY15698.1 428 SIPLNIVIKISYAGGRPAVKISDNIGKNT-GDEKTVEDVKRRL 469
                 *****************************.8888899888876 PP

>> NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.9   0.1   1.3e-40   1.2e-36       1     125 []      20     147 ..      20     147 .. 0.97

  Alignments for each domain:
  == domain 1  score: 125.9 bits;  conditional E-value: 1.3e-40
  NAPRTase_N   1 LdtDlYkltmaqavfkkgpdvevvfelffRkkpfkgeyaivagleevieylenlrfteeeieyLkrklpyfkedfleyLrtfrfkpse.vaveeeev.. 96 
                 LdtDlYkltm++av+k +p++ev++ +++R++++k +++++ +l+++i++l+n+ ++++eie+L+++++y+ +++l yL t+r+kpse v+++  +   
  KKY15698.1  20 LDTDLYKLTMQCAVLKYFPQTEVSYAFTNRTPNMKLTREAFVWLQRQIDKLANVYVSDSEIEWLRKECEYLGPEYLRYLTTLRLKPSEqVELKFTSQdg 118
                 8**************************************************************************************999999977677 PP

  NAPRTase_N  97 vfpgepeirveGpwieaillEtplLaivn 125
                  + g+++++++G w+++il+E+plLa+ +
  KKY15698.1 119 SDTGDLSMSIKGLWVDTILYEIPLLALTS 147
                 9************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 2938.92
//
Query:       KKY15699.1  [L=956]
Description: hypothetical protein UCRPC4_g06200 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.9e-24   83.9   4.8    1.5e-23   83.0   0.0    3.5  3  Cep57_MT_bd     Centrosome microtubule-binding domain of Cep5
    9.9e-14   51.2   9.2    9.9e-14   51.2   9.2    3.4  3  Cep57_CLD_2     Centrosome localisation domain of PPC89
  ------ inclusion threshold ------
      0.044   14.0   0.8      0.044   14.0   0.8    2.8  3  HALZ            Homeobox associated leucine zipper
      0.046   13.4   0.0      0.046   13.4   0.0    3.9  4  CAF-1_p150      Chromatin assembly factor 1 complex p150 subu
       0.13   12.9   0.1       0.13   12.9   0.1    4.3  5  YabA            Initiation control protein YabA
       0.37   10.8  16.6        1.5    8.8   6.9    3.7  3  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
       0.64   10.5   8.5       0.19   12.2   1.5    3.2  4  RBFA            Ribosome-binding factor A


Domain annotation for each model (and alignments):
>> Cep57_MT_bd  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.6       4.8   1.2e+04      28      50 ..     300     319 ..     286     335 .. 0.47
   2 ?    0.7   0.3      0.29   7.5e+02      19      40 ..     407     428 ..     399     434 .. 0.86
   3 !   83.0   0.0   5.8e-27   1.5e-23       1      77 []     794     870 ..     794     870 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.8
  Cep57_MT_bd  28 klelqelaaqynaldpslgkrkR 50 
                  k++ +  a+++++ +     ++R
   KKY15699.1 300 KAKAENEAEELREAN---AVSQR 319
                  333333333333333...33333 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.29
  Cep57_MT_bd  19 eLedEfehlklelqelaaqyna 40 
                  +L++E e l++el++ +a  + 
   KKY15699.1 407 GLQEENERLRAELAQISALVQR 428
                  7999999999999999988775 PP

  == domain 3  score: 83.0 bits;  conditional E-value: 5.8e-27
  Cep57_MT_bd   1 atlrpsqspkeaLaevlkeLedEfehlklelqelaaqynaldpslgkrkRkdLaeeleelvkrlEaKadqIykLydv 77 
                  +tlrpsq+p  aLa  +k+LedE++hlk+el +++a+y ++dpsl++r Rk +  ++++l+k +E+K+d Iy+Lydv
   KKY15699.1 794 PTLRPSQPPSLALAIAIKTLEDELSHLKAELGKFQARYDSTDPSLSRRGRKVIGVRIRKLLKVCEQKGDLIYSLYDV 870
                  699*************************************************************************8 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   2.2         2   5.1e+03      40      63 ..     289     312 ..     285     318 .. 0.71
   2 !   51.2   9.2   3.9e-17   9.9e-14       1      66 [.     352     417 ..     352     420 .. 0.97
   3 ?    1.8   0.0     0.098   2.5e+02       3      25 ..     808     830 ..     806     834 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2
  Cep57_CLD_2  40 LgvAyeelneLkaevealrkELke 63 
                  L+++  +l+  ka+ e  ++EL+e
   KKY15699.1 289 LQEKVADLEMAKAKAENEAEELRE 312
                  677777777777777777788877 PP

  == domain 2  score: 51.2 bits;  conditional E-value: 3.9e-17
  Cep57_CLD_2   1 LeaevktLqnrLdsltrklqvheeelkrLnkERdsalrqLgvAyeelneLkaevealrkELkeqra 66 
                  Le+++++Lqn+L+s++rk+++ e ++ +L+kERd a  qL vA+  ++e k+e+e l++E++  ra
   KKY15699.1 352 LEQANTSLQNKLNSANRKVAISELTITNLSKERDAATAQLAVAFMSVEEMKNENEGLQEENERLRA 417
                  89**********************************************************998776 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.098
  Cep57_CLD_2   3 aevktLqnrLdsltrklqvheee 25 
                   ++ktL+++L++l  +l++ +  
   KKY15699.1 808 IAIKTLEDELSHLKAELGKFQAR 830
                  57899999999999999887765 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.4         3   7.6e+03      24      37 ..     352     365 ..     349     369 .. 0.84
   2 ?   14.0   0.8   1.7e-05     0.044      15      42 ..     399     426 ..     397     427 .. 0.88
   3 ?   -0.2   0.2      0.48   1.2e+03       2      23 ..     812     833 ..     811     834 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3
        HALZ  24 LkkenekLkaelqe 37 
                 L++ n +L+++l++
  KKY15699.1 352 LEQANTSLQNKLNS 365
                 888999***99976 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.7e-05
        HALZ  15 daLksdydsLkkenekLkaelqeLkekl 42 
                 + +k +++ L++ene+L+ael++ ++++
  KKY15699.1 399 EEMKNENEGLQEENERLRAELAQISALV 426
                 67999****************9988876 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.48
        HALZ   2 QLErDYdvLKasYdaLksdyds 23 
                  LE +   LKa   + +++yds
  KKY15699.1 812 TLEDELSHLKAELGKFQARYDS 833
                 5677777777777777777776 PP

>> CAF-1_p150  Chromatin assembly factor 1 complex p150 subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   2.8      0.11   2.8e+02      29      62 ..     298     330 ..     278     342 .. 0.65
   2 ?   13.4   0.0   1.8e-05     0.046     109     146 ..     401     438 ..     379     444 .. 0.83
   3 ?   -2.8   1.3       1.8   4.5e+03     106     109 ..     504     507 ..     468     551 .. 0.49
   4 ?   -3.7   2.8       3.3   8.6e+03      51      60 ..     607     616 ..     569     652 .. 0.35

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.11
  CAF-1_p150  29 lklerekeekkrlkeekkeekerakeearrkkee 62 
                 + + +  +e+++l+e + ++ +ra++e+rr ++ 
  KKY15699.1 298 MAKAKAENEAEELREAN-AVSQRAQQEHRRYRRS 330
                 23344556677777654.5777888888877765 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.8e-05
  CAF-1_p150 109 kkeeekrlkeeekrikaekaeitrflqksktqqaPktl 146
                  k+e+  l+ee++r++ae a+i+ ++q+s     P t+
  KKY15699.1 401 MKNENEGLQEENERLRAELAQISALVQRSSHFARPNTV 438
                 5778889**********************998888886 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.8
  CAF-1_p150 106 ekrk 109
                   rk
  KKY15699.1 504 GERK 507
                 2222 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 3.3
  CAF-1_p150  51 rakeearrkk 60 
                 + +ee +r +
  KKY15699.1 607 KGHEEPHRGR 616
                 1122222222 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   1.1     0.075   1.9e+02       6      62 ..     282     324 ..     275     364 .. 0.58
   2 ?   12.9   0.1   5.1e-05      0.13      10      55 ..     377     422 ..     367     458 .. 0.79
   3 ?   -3.3   0.1       5.8   1.5e+04      89     101 ..     736     749 ..     733     749 .. 0.78
   4 ?   -1.8   0.0         2   5.1e+03      10      29 ..     810     829 ..     805     842 .. 0.59
   5 ?   -2.8   0.1       3.9   9.9e+03      20      42 ..     882     904 ..     864     912 .. 0.59

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.075
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXX CS
        YabA   6 lfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekek 62 
                 +f               +l+ l+e++a+l    a+ e e e+lre  + ++++++e+
  KKY15699.1 282 IFV--------------SLKLLQEKVADLEMAKAKAENEAEELREANAVSQRAQQEH 324
                 344..............4445555555555555555555555555552222222221 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 5.1e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXX CS
        YabA  10 leeleeqleelleeleelkeelaelleenaeLeleneklrerleee 55 
                 +++l+++ ++ +++l+   ++++e+ +en+ L+ ene+lr +l++ 
  KKY15699.1 377 ITNLSKERDAATAQLAVAFMSVEEMKNENEGLQEENERLRAELAQI 422
                 6778888888888999889999999999999999999999998433 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 5.8
                 XXXXXX..XXXXXX CS
        YabA  89 Gsrrked.dClfCl 101
                  ++r+++ +C+ C 
  KKY15699.1 736 SDSRHDGaNCIVCQ 749
                 56788888*****5 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 2
                 HHHHHHHHHHHHHHHHHHHH CS
        YabA  10 leeleeqleelleeleelke 29 
                 +++le++l++l++el++ ++
  KKY15699.1 810 IKTLEDELSHLKAELGKFQA 829
                 44455555555555554443 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 3.9
                 HHHHHHHHHHHHHHHHHHHHHHH CS
        YabA  20 lleeleelkeelaelleenaeLe 42 
                 +++e+e   ++l+e++++n+++e
  KKY15699.1 882 TQDEVEVTLMNLKEIVKRNDAVE 904
                 33455555566666666666554 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.7    0.0084        22      71     123 ..     268     321 ..     262     329 .. 0.75
   2 ?    8.8   6.9    0.0006       1.5       6      73 ..     357     424 ..     352     431 .. 0.91
   3 ?    0.3   0.0      0.25   6.3e+02      60      85 ..     809     834 ..     804     864 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0084
  CENP-F_leu_zip  71 leldLvalrsekeeLekelqkkqervseLeslnsslenlleek.Eqekvqmkee 123
                     l+l+ v + ++ + +  +l+  qe+v +Le+++ + en  ee+ E++ v  + +
      KKY15699.1 268 LQLEAVPIPEDEKAIFVSLKLLQEKVADLEMAKAKAENEAEELrEANAVSQRAQ 321
                     6777777778888888999999*************9999888624444444433 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0006
  CENP-F_leu_zip   6 lhvlekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelrelel 73 
                      ++++kL  ++rk +  +  + nL +e   + +++  + + +E+ k+e e+l+ee e+l++el ++++
      KKY15699.1 357 TSLQNKLNSANRKVAISELTITNLSKERDAATAQLAVAFMSVEEMKNENEGLQEENERLRAELAQISA 424
                     567899*********************************************************99886 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.25
  CENP-F_leu_zip  60 eieelaeelreleldLvalrsekeeL 85 
                      i++l+ el++l+++L +++   ++ 
      KKY15699.1 809 AIKTLEDELSHLKAELGKFQARYDST 834
                     57778888888888887777665555 PP

>> RBFA  Ribosome-binding factor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.7   1.2e+04       5      19 ..     144     158 ..     142     176 .. 0.75
   2 ?   -3.4   0.0       5.5   1.4e+04      30      72 ..     268     311 ..     259     317 .. 0.59
   3 ?   12.2   1.5   7.4e-05      0.19       3      77 ..     349     421 ..     347     428 .. 0.79
   4 ?    0.9   0.2      0.25   6.4e+02       1      22 [.     471     492 ..     471     508 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.7
                 HHHHHHHHHHHHHHH CS
        RBFA   5 vaeliqrelseilqe 19 
                 v+++i++ l e+ ++
  KKY15699.1 144 VEKRIRKTLGEMHTR 158
                 788899988888744 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.5
                 CEEEEEEESTTSSEEEEEEEESS-HH.HHHHHHHHHHHTHHHHH CS
        RBFA  30 vtiteVkvsrDlskakVyvsvlgsee.ekeevlkaLkkaagflr 72 
                 +++  V + +D + + V +++l+++  + e + ++ +++a++lr
  KKY15699.1 268 LQLEAVPIPEDEKAIFVSLKLLQEKVaDLEMAKAKAENEAEELR 311
                 56666777777777777777777532323333334445555554 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 7.4e-05
                 HHHHHHHHHHHHHHHHHCT-HCCTGHHCEEEEEEESTTSSEEEEEEEESS-HHHHHHHHHHHHHTHHHHHHHHHH CS
        RBFA   3 ervaeliqrelseilqeelkdprlgklvtiteVkvsrDlskakVyvsvlgseeekeevlkaLkkaagflrrelak 77 
                  r+ e+  + l++ l++  ++  + + +tit+ +  rD   a+  v +++ e e ++  ++L++++++lr ela+
  KKY15699.1 349 LRILEQANTSLQNKLNSANRKVAI-SELTITNLSKERDAATAQLAVAFMSVE-EMKNENEGLQEENERLRAELAQ 421
                 566677777777777555556666.49********************99966.55556699************87 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.25
                 TCHHHHHHHHHHHHHHHHHCT- CS
        RBFA   1 Rqervaeliqrelseilqeelk 22 
                 Rq+rva ++  +ls+i +e+ +
  KKY15699.1 471 RQDRVAAQVNDQLSRISEEQNN 492
                 89*************9955433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (956 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1360  (0.0758548); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.86u 0.35s 00:00:01.21 Elapsed: 00:00:00.51
# Mc/sec: 5690.31
//
Query:       KKY15700.1  [L=533]
Description: hypothetical protein UCRPC4_g06201 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.48
# Mc/sec: 3338.73
//
Query:       KKY15701.1  [L=165]
Description: hypothetical protein UCRPC4_g06202 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-21   77.2   0.7      1e-19   70.8   0.7    2.1  1  Polysacc_synt_4  Polysaccharide biosynthesis
  ------ inclusion threshold ------
      0.082   12.4   0.1       0.22   11.0   0.1    1.6  2  Zwint            ZW10 interactor


Domain annotation for each model (and alignments):
>> Polysacc_synt_4  Polysaccharide biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.7   1.2e-23     1e-19       6     187 ..      31     149 ..      23     152 .. 0.95

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 1.2e-23
  Polysacc_synt_4   6 avkvlerrevpcnlLvFGlghesllwkslnkggrlvlleeddeivekvkkefpeleayevkYktkvsdadeLlsaakkeaecrpvqnllasdck 99 
                      a+k ++++++++ +L           +++ +g++l+l+++ddei++++k+ fp+++      ++++ d+d+++s+++k                
       KKY15701.1  31 ASKPVQHMATYWAIL-----------EKI-RGSQLRLTKMDDEIYTHFKETFPDFD------PAATVDEDKMKSKEGK---------------- 90 
                      678899999999999...........***.*************************8......9***************................ PP

  Polysacc_synt_4 100 LalrdLPnevyeekWDvilvDaprgfaeeapgrmediytagvlaRarkseeyseetdvfvhdvqrkvekafseeFlceeiavnregl..l 187
                                  e W        r+f++++++++ed +++g+++R++ ++ey+e++++f++++q          F+++eia+nr+gl  +
       KKY15701.1  91 ------------EVW--------RNFMNQYEKKIED-FNFGTMLRNNPKTEYTEKDTIFAMRMQ----------FYAIEIARNRAGLndW 149
                      ............99*........*************.***************************..........************8655 PP

>> Zwint  ZW10 interactor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.062   5.5e+02      54      93 ..      20      58 ..       7      68 .. 0.67
   2 ?   11.0   0.1   2.5e-05      0.22      42      83 ..      67     108 ..      42     129 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.062
       Zwint 54 edtsrqkaiaakeqwkelkatyqehveaitsaltqalpkv 93
                ed+ +q a++   +  +  aty   +e i+ +  + l+k+
  KKY15701.1 20 EDMEKQFAVKGASKPVQHMATYWAILEKIRGSQLR-LTKM 58
                67777777777666667777777777777665433.4444 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 2.5e-05
       Zwint  42 edtaqgldPlasedtsrqkaiaakeqwkelkatyqehveait 83 
                 ++t  + dP a+ d  + k+ + ke w+++   y++++e  +
  KKY15701.1  67 KETFPDFDPAATVDEDKMKSKEGKEVWRNFMNQYEKKIEDFN 108
                 5677899******************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       929  (0.0518155); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1028.76
//
Query:       KKY15702.1  [L=1247]
Description: putative abc a-pheromone efflux pump [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-75  254.7  17.8    1.9e-51  175.4   6.7    2.2  2  ABC_membrane     ABC transporter transmembrane region
    8.2e-55  185.1   0.0    2.5e-28   99.3   0.0    2.7  2  ABC_tran         ABC transporter
    3.4e-13   49.5   1.1    3.2e-06   26.7   0.4    5.0  4  SMC_N            RecF/RecN/SMC N terminal domain
    4.4e-09   36.0   0.9    0.00058   19.6   0.0    2.7  2  AAA_29           P-loop containing region of AAA domain
    6.1e-09   35.2   0.1      0.002   17.0   0.0    3.2  3  ABC_ATPase       Predicted ATPase of the ABC class
      1e-06   29.0   0.3      0.071   13.4   0.0    3.9  3  AAA_22           AAA domain
    1.7e-06   28.5   0.3       0.12   12.8   0.1    3.1  2  AAA_16           AAA ATPase domain
    3.1e-05   23.9   1.0       0.27   11.1   0.0    2.7  2  RsgA_GTPase      RsgA GTPase
    3.1e-05   24.6   0.6     0.0016   18.9   0.0    2.5  2  AAA_23           AAA domain
      4e-05   23.3   0.0       0.41   10.2   0.0    2.8  3  AAA_25           AAA domain
    0.00037   20.3   0.1       0.22   11.2   0.0    2.2  2  AAA_15           AAA ATPase domain
     0.0019   17.5   3.2       0.27   10.5   0.0    2.7  3  Zeta_toxin       Zeta toxin
      0.002   18.7   0.0        1.5    9.4   0.0    2.6  2  AAA_18           AAA domain
     0.0024   17.7   1.4        0.4   10.4   0.0    3.5  3  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0077   15.3   0.0          2    7.4   0.0    2.2  2  DUF3987          Protein of unknown function (DUF3987)
  ------ inclusion threshold ------
      0.016   15.2   0.0         14    5.7   0.0    3.4  3  AAA_5            AAA domain (dynein-related subfamily)
      0.031   14.2   0.6        3.6    7.5   0.0    2.6  2  APS_kinase       Adenylylsulphate kinase
      0.037   13.2   0.7        2.9    7.0   0.0    2.3  2  G-alpha          G-protein alpha subunit
      0.037   14.2   0.1         12    6.0   0.1    2.8  2  AAA_33           AAA domain
      0.042   13.9   0.2        3.6    7.7   0.1    2.6  2  MMR_HSR1         50S ribosome-binding GTPase
      0.048   13.4   1.4        5.8    6.6   0.2    3.3  3  AAA_30           AAA domain
      0.056   13.7   2.5        6.8    7.0   0.2    3.8  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
      0.061   13.0   0.0         11    5.7   0.0    2.4  2  Sigma54_activat  Sigma-54 interaction domain
      0.087   11.9   0.0        3.2    6.7   0.0    2.2  2  T2SSE            Type II/IV secretion system protein
      0.092   12.8   4.7       0.49   10.4   0.9    2.7  3  DUF87            Helicase HerA, central domain
       0.12   12.1   0.5         13    5.4   0.0    2.5  2  PRK              Phosphoribulokinase / Uridine kinase family
       0.14   12.5   0.1         37    4.8   0.0    2.7  2  RNA_helicase     RNA helicase
       0.17   11.6   0.5        7.2    6.3   0.0    2.5  2  AAA_24           AAA domain
       0.18   11.2   0.1         10    5.3   0.0    2.8  3  FtsK_SpoIIIE     FtsK/SpoIIIE family
       0.21   10.9   2.2         11    5.2   0.1    2.9  3  ATPase           KaiC


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   3.3   1.2e-26     7e-24     115     271 ..       3     157 ..       2     159 .. 0.97
   2 !  175.4   6.7   3.1e-54   1.9e-51       1     273 [.     637     908 ..     637     909 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.9 bits;  conditional E-value: 1.2e-26
                   HCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHH CS
  ABC_membrane 115 lgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfekale 211
                   +++ lg + q++++ +++l+v+fy++wklt+v+++++p+ ++v  +++ ++++  +++  +++ a ++a  +l  i +Vk f+++e + +++  +++
    KKY15702.1   3 TSQPLGFVAQNIISSLASLGVAFYYSWKLTMVTMSTVPIAFIVLGLLSTLIHPSMRDQDAQLNYAAKCAHSALISIGVVKGFNAQEHEAQHYSMYVK 99 
                   5788999****************************************************************************************** PP

                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHH CS
  ABC_membrane 212 eakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailf 271
                   +a   ++k a++n++++g+ ++++l++++  +w+G++lv +++ls+ d  v+++++a l+
    KKY15702.1 100 QAAAYYRKQAHSNAVQMGFVRVFTLAMFVQGYWYGHHLVAEHALSFAD--VTTTFWACLL 157
                   ************************************************..9999998664 PP

  == domain 2  score: 175.4 bits;  conditional E-value: 3.1e-54
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS.TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHH.. CS
  ABC_membrane   1 liliillailagvlsplfplvlgrildtlldk.gdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdt.. 94 
                   lil++++a+ + +  p+f+++++++l t++   +d++  +  +ysl++l+++ ++++ ++l  yll + g+ ++ +lr +++k+il qp ++f++  
    KKY15702.1 637 LILAFIAALTNAAGPPVFSYIFSQLLTTFFHPrQDAH--KALQYSLYILAVAGIDGLGCYLMHYLLECSGQAWVDTLRIEAMKRILDQPKEWFEDek 731
                   699***************************7534444..6*******************************************************99 PP

                   SCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH CS
  ABC_membrane  95 nsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgir 191
                   n  ++l+  l ++++ +r++lg++ gl+f + ++++++++++++++wkltlv la +p ++ +++++ +++ + ++k ++a +  +s++ E++s i+
    KKY15702.1 732 NLLSSLTMCLDRNANEMRNLLGRFAGLLFIAATMVLVAIVWSMIVCWKLTLVALAAIPGMYAITKIFDSVTARWERKTSEAADVCGSILVETFSDIK 828
                   99*********************************************************************************************** PP

                   HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHH CS
  ABC_membrane 192 tVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfga 273
                   tV++++ e yf +k++ a+++ ++ + kka++ g+++g++++++ +++al++w+G+  v s++ ++++  v++++++ilf a
    KKY15702.1 829 TVRSLTLEGYFHQKYKRAVRRTLSLNTKKALYCGIFFGAAESAIHFITALVFWYGVRVVASDDFTIKS--VLIAFSMILFSA 908
                   ********************************************************************..*******99875 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.0   4.1e-31   2.5e-28       6     137 .]     234     381 ..     229     381 .. 0.86
   2 !   83.0   0.0   4.5e-26   2.7e-23       1     137 []     977    1151 ..     977    1151 .. 0.80

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 4.1e-31
                 EEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...................HHHTCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxx RF
    ABC_tran   6 lklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...................esdeei 85 
                 + + +ge++ + G++G+GKSt+ +l+++ ++pt+G+i +d +d+ e ++++lr+++  ++q++qlf+e+ + +n                    + +++
  KKY15702.1 234 FFFPAGETTFLAGKSGSGKSTVGNLIMRFYEPTSGQIFIDATDIAELDTNWLRNNVTLVQQQSQLFKET-ILRNiafgrheyhsvtleemkicLELANL 331
                 67899****************************************************************.66777999999666554433333333336 PP

                 HHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++ +++l +   +dt v++s++ LSgGq+qrva+ara l++ ++l+lDE t+
  KKY15702.1 332 QDTVTHLPQG--ADTLVGTSGAALSGGQRQRVAIARARLRDTPILILDESTS 381
                 6666666655..59***********************************995 PP

  == domain 2  score: 83.0 bits;  conditional E-value: 4.5e-26
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...........B-HHHCCHCEEEE-SS--S-TTSBHHHH....... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxx....... RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...........qeleslrkeigvlpqepqlfpeltvren....... 79  
                  l++++l++ ++ ++aivG++G+GKSt+++ll+g ++ t  + + ++ ++ +             +++lr+ i+ +pq+p+lfp + v +n       
  KKY15702.1  977 LRDLTLDIPPNGCTAIVGQSGSGKSTIASLLLGFYSCTPRSDQTQSSNSVSpitissfaissLYTPRLRNIISLVPQNPTLFPIS-VTQNiiyglpl 1072
                  6799*******************************996655544433333335666666666999******************99.99999****** PP

                  ....HHHTCHHHHHHHSTTGG.................TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  ....xxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   80 ....esdeeiekalsklglke.................lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                      + ++ ie a++  g+++                 ++++ ++s++  LSgGq qr+a+aral++kp++l+lDE+t+
  KKY15702.1 1073 sspyTTSSSIELAARLSGIHDfiltlphgyetvvshgdTNTESAGSDTIGLSGGQAQRIAIARALVRKPRVLILDEATS 1151
                  **9833333333333333333555555666777777668899999999*****************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.4   5.4e-09   3.2e-06     116     207 ..     315     419 ..     230     426 .. 0.64
   2 !    8.8   0.0    0.0017         1      24      42 ..     987    1005 ..     974    1022 .. 0.77
   3 ?    4.2   0.0     0.043        26     137     191 ..    1123    1173 ..    1078    1174 .. 0.84
   4 ?    0.8   0.0      0.47   2.8e+02     190     212 ..    1192    1214 ..    1186    1220 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 5.4e-09
                 EEE-HHHHHHHHHCTT-STT.................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-S CS
                 xxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 116 kevtkkevsellesagiske.................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivisl 197
                 ++vt +e++  le a+++ +                 +LSgG+++ va+a      + + +p+ +lDe  +aLD+  ++ +   +++ +k    i+i++
  KKY15702.1 315 HSVTLEEMKICLELANLQDTvthlpqgadtlvgtsgaALSGGQRQRVAIA----RARLRDTPILILDESTSALDNITRTSIMASIRKWRKGRTTIIITH 409
                 23333344444444444433666666666666677779*******99875....67******************************************* PP

                 SHHHCCC-SC CS
                 xxxxxxxxxx RF
       SMC_N 198 reemlekadk 207
                 +  ++++ + 
  KKY15702.1 410 DMSQIKRGEF 419
                 *999987765 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0017
                  SSEEEEEESTTSSHHHHHH CS
                  xxxxxxxxxxxxxxxxxxx RF
       SMC_N   24 ksftaivGpNGSGKsnlld 42  
                  ++ taivG+ GSGKs +  
  KKY15702.1  987 NGCTAIVGQSGSGKSTIAS 1005
                  4689***********9865 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.043
                  S-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  137 LSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQ 191 
                  LSgG+ + +a+a       v++  + +lDe  +aLD      + + +++  + +Q
  KKY15702.1 1123 LSGGQAQRIAIARA----LVRKPRVLILDEATSALDSVSAGLIRDSIRSLLDPVQ 1173
                  89999887776643....345555779************9999999988766655 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.47
                  SEEEEE-SSHHHCCC-SCEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  190 aQfivislreemlekadklvgvt 212 
                    +i i++++em++ ad++v ++
  KKY15702.1 1192 LAVILITHSREMMKLADNIVVMK 1214
                  5689*************998665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   5.6e-05     0.033      22      38 ..     238     255 ..     230     259 .. 0.86
   2 !   19.6   0.0   9.7e-07   0.00058      14      38 ..     979    1003 ..     975    1008 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.6e-05
      AAA_29  22 kg.atlltGpsGsGKSTl 38 
                 +g +t+l+G+sGsGKST+
  KKY15702.1 238 AGeTTFLAGKSGSGKSTV 255
                 5669*************6 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 9.7e-07
      AAA_29   14 ghtieidlkgatlltGpsGsGKSTl 38  
                  + t++i ++g t ++G+sGsGKST+
  KKY15702.1  979 DLTLDIPPNGCTAIVGQSGSGKSTI 1003
                  56889999****************8 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.4e-06     0.002     294     371 ..     323     400 ..     312     416 .. 0.84
   2 ?    1.8   0.0      0.14        83     243     262 ..     986    1005 ..     982    1015 .. 0.81
   3 !   12.1   0.0    0.0001     0.061     302     416 ..    1091    1218 ..    1085    1233 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.4e-06
                 T--EEEE--TTTB---CCC--STTEEESS-.-HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG- CS
  ABC_ATPase 294 grsvkgvDispFinnLPegkdttkfstedA.SGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskeke 371
                  ++++ ++++  +++LP+g+dt   +   A SG   q ++i++a  +++++l++DE tsA   + r + m+++  k+++
  KKY15702.1 323 KICLELANLQDTVTHLPQGADTLVGTSGAAlSGGQRQRVAIARARLRDTPILILDESTSALDNITRTSIMASIR-KWRK 400
                 566778899999**********966665555******************************9999999999876.5544 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.14
                  -SSEEEEEE-TTSSHHHHHH CS
  ABC_ATPase  243 pkGvtlIvGggfhGKsTLLe 262 
                  p+G t+IvG    GKsT+ +
  KKY15702.1  986 PNGCTAIVGQSGSGKSTIAS 1005
                  789**************753 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.0001
                  -TTTB---CCC--ST....TEEESS-.......-HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHH....H---HHHHHHS-GGG--B--HHHCHHHH CS
  ABC_ATPase  302 ispFinnLPegkdtt....kfstedA.......SGStsqAanimealeagakllLiDEDtsAtNl....mirDermqelvskekepitplvdrvrel 383 
                  i  Fi +LP+g +t     +  te A       SG   q  +i++al ++ ++l++DE tsA       +irD+  ++l+   + p +p     ++ 
  KKY15702.1 1091 IHDFILTLPHGYETVvshgDTNTESAgsdtiglSGGQAQRIAIARALVRKPRVLILDEATSALDSvsagLIRDSI-RSLLDPVQHPNHPQHTNRHDP 1186
                  667888888877775332334444444444555888999999********************7643333789976.566678888999988877777 PP

                  HHHH--EEEEEESS-GCCTTT-SEEEEEETTEE CS
  ABC_ATPase  384 ykklgvstilvvggsgdyldvAdtvilmeeykp 416 
                   +   + +il++  s +++++Ad++++m++ ++
  KKY15702.1 1187 EAPKPLAVILIT-HSREMMKLADNIVVMKDGTC 1218
                  677777777765.67889**********98555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1    0.0072       4.3       8      49 ..     242     276 ..     239     407 .. 0.82
   2 !   13.4   0.0   0.00012     0.071       5      31 ..     987    1013 ..     985    1056 .. 0.75
   3 ?    3.1   0.0      0.18   1.1e+02      81     117 ..    1132    1170 ..    1104    1201 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0072
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlps 49 
                 +++ G sG+GK+t+ + +++ ++         ++++f++++ 
  KKY15702.1 242 TFLAGKSGSGKSTVGNLIMRFYEP-------TSGQIFIDATD 276
                 5789**************999963.......66666666654 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00012
      AAA_22    5 agilvvtGesGtGKTtllrrlleqlde 31  
                   g+++++G+sG+GK+t +  ll  +  
  KKY15702.1  987 NGCTAIVGQSGSGKSTIASLLLGFYSC 1013
                  589***************999877754 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.18
      AAA_22   81 aleqalraravielliiDEaqh.lr..seealeeL.rslln 117 
                  a+++al ++ +  +li+DEa   l+  s+ ++++  rsll+
  KKY15702.1 1132 AIARALVRKPR--VLILDEATSaLDsvSAGLIRDSiRSLLD 1170
                  45555555555..*******998876655555554466655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0    0.0003      0.18      24     118 ..     239     360 ..     227     388 .. 0.55
   2 !   12.8   0.1   0.00019      0.12      24     107 ..     985    1111 ..     973    1177 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0003
      AAA_16  24 pelvllsGesGvGKsslvrellralekd.ggiflrgkcdql......esaipysa.laqalareellrqlldeaesaeleawrekleeala........ 106
                 +e ++l G sG+GKs++ + ++r +e + g if+ ++          + ++++++   q++ +e++lr ++       +e ++   +e+++        
  KKY15702.1 239 GETTFLAGKSGSGKSTVGNLIMRFYEPTsGQIFIDATDIAEldtnwlRNNVTLVQqQSQLF-KETILRNIAFG----RHE-YHSVTLEEMKiclelanl 331
                 4789******************988888434443332222221112222344433244444.33444444433....222.222233334444445555 PP

      AAA_16 107 .................avpelagaeasr 118
                                  ++++l+g +++r
  KKY15702.1 332 qdtvthlpqgadtlvgtSGAALSGGQRQR 360
                 55555555544455545444455544444 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00019
      AAA_16   24 p..elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala........... 106 
                  p  +++ ++G+sG+GKs+++  ll      g++  + + dq +s+ + s+  ++ +a ++l++  l++  s ++++ ++ ++ +++           
  KKY15702.1  985 PpnGCTAIVGQSGSGKSTIASLLL------GFYSCTPRSDQTQSSNSVSPiTISSFAISSLYTPRLRNIIS-LVPQNPTLFPISVTqniiyglplss 1074
                  3458999*************9999......44445556666655545544444444444555555544333.4444444444444444444455555 PP

      AAA_16  107 ....................................a 107 
                                                       
  KKY15702.1 1075 pyttsssielaarlsgihdfiltlphgyetvvshgdT 1111
                  5555555555555555555555555555555555542 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.4   0.00079      0.47      99     121 ..     239     261 ..     234     323 .. 0.89
   2 !   11.1   0.0   0.00045      0.27     100     121 ..     988    1009 ..     967    1027 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00079
                  TSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallp 121
                  ++t++l+G+SG GKSt+ n ++ 
   KKY15702.1 239 GETTFLAGKSGSGKSTVGNLIMR 261
                  689**************998865 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00045
                   SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  100 ktsvlvGqSGvGKStLinallp 121 
                    ++++vGqSG GKSt+   ll+
   KKY15702.1  988 GCTAIVGQSGSGKSTIASLLLG 1009
                   7899************998876 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.19   1.1e+02      21      35 ..     241     255 ..     226     260 .. 0.86
   2 !   18.9   0.0   2.8e-06    0.0016      10      54 ..     977    1021 ..     973    1039 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.19
      AAA_23  21 ltlItGpNGaGKTTi 35 
                  t + G+ G+GK+T+
  KKY15702.1 241 TTFLAGKSGSGKSTV 255
                 68899*********7 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 2.8e-06
      AAA_23   10 frdqeidF.skgltlItGpNGaGKTTildAiklaLygetprlsrks 54  
                  +rd ++d   +g t+I+G+ G+GK+Ti   + l++y  tpr + + 
  KKY15702.1  977 LRDLTLDIpPNGCTAIVGQSGSGKSTIA-SLLLGFYSCTPRSDQTQ 1021
                  48889999667***************96.56678888777766544 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00069      0.41      29      49 ..     235     255 ..     210     262 .. 0.82
   2 !    9.7   0.0   0.00096      0.57      28      53 ..     983    1007 ..     957    1016 .. 0.77
   3 ?   -3.0   0.0       7.7   4.6e+03     133     156 ..    1133    1154 ..    1125    1157 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00069
      AAA_25  29 llpagelallaGapgtGKttl 49 
                 + page++ laG +g+GK+t+
  KKY15702.1 235 FFPAGETTFLAGKSGSGKSTV 255
                 78*****************97 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00096
      AAA_25   28 gllpagelallaGapgtGKttlaldl 53  
                  + +p ++ ++++G++g+GK+t+a+ l
  KKY15702.1  983 D-IPPNGCTAIVGQSGSGKSTIASLL 1007
                  3.5999****************9876 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 7.7
      AAA_25  133 leaaieevegvrlvviDplsralg 156 
                  +++a+ +  ++r++++D  ++al+
  KKY15702.1 1133 IARALVR--KPRVLILDEATSALD 1154
                  5566655..59******9999875 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0     0.008       4.8      23      70 ..     240     282 ..     235     333 .. 0.85
   2 !   11.2   0.0   0.00036      0.22      14      48 ..     977    1012 ..     975    1038 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.008
      AAA_15  23 eeltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifen 70 
                 e +t+l Gk +sGKS++ +++  F + +    +  i+i++ d+ + + 
  KKY15702.1 240 E-TTFLAGKSGSGKSTVGNLIMRFYEPT----SGQIFIDATDIAELDT 282
                 4.89*********************998....6777788877777655 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00036
      AAA_15   14 lkdveidlsee.ltvliGkNnsGKSsilealdlFln 48  
                  l+d ++d+ ++  t ++G  +sGKS+i+ +l  F +
  KKY15702.1  977 LRDLTLDIPPNgCTAIVGQSGSGKSTIASLLLGFYS 1012
                  788999999999*****************9987765 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2         9   5.4e+03      66      96 ..      88     118 ..      85     122 .. 0.82
   2 !   10.5   0.0   0.00045      0.27      19      57 ..     242     280 ..     238     308 .. 0.83
   3 !    6.8   0.2    0.0063       3.8      21      36 ..     992    1007 ..     988    1011 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 9
  Zeta_toxin  66 kadpkkaseltqkdaselvekllqeaiengy 96 
                 +++ +++s +++++a    +++   a+++g+
  KKY15702.1  88 EHEAQHYSMYVKQAAAYYRKQAHSNAVQMGF 118
                 5577899999999999999999999999886 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00045
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrldpDdlRel 57 
                  +l+G +G+GKs++ +l+ +  e++++ + +d++d+ el
  KKY15702.1 242 TFLAGKSGSGKSTVGNLIMRFYEPTSGQIFIDATDIAEL 280
                 69*********************9*******99998766 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0063
  Zeta_toxin   21 lgGqpGAGKselaell 36  
                  ++Gq+G+GKs++a+ll
  KKY15702.1  992 IVGQSGSGKSTIASLL 1007
                  78***********987 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0025       1.5       2      20 ..     243     261 ..     243     319 .. 0.78
   2 ?    6.5   0.0     0.019        12       3      18 ..     992    1007 ..     991    1036 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0025
      AAA_18   2 lltGtpGvGKttlakeLsk 20 
                 +l+G++G+GK+t+++ + +
  KKY15702.1 243 FLAGKSGSGKSTVGNLIMR 261
                 699***********99855 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.019
      AAA_18    3 ltGtpGvGKttlakeL 18  
                  + G +G+GK+t+a  L
  KKY15702.1  992 IVGQSGSGKSTIASLL 1007
                  8899*********998 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.077        46       2      19 ..     242     259 ..     241     303 .. 0.77
   2 !   10.4   0.0   0.00067       0.4       2      37 ..     990    1027 ..     989    1063 .. 0.74
   3 ?   -0.3   0.1       1.2   7.3e+02     246     301 ..    1132    1203 ..    1119    1205 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.077
      AAA_21   2 nvliGpNgsGKSnLLdal 19 
                 ++l G+ gsGKS++  ++
  KKY15702.1 242 TFLAGKSGSGKSTVGNLI 259
                 789**********98877 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00067
      AAA_21    2 nvliGpNgsGKSnLLdaldllarl..drdvegltdels 37  
                  ++++G  gsGKS++  +l ++ ++  ++d++++ ++ s
  KKY15702.1  990 TAIVGQSGSGKSTIASLLLGFYSCtpRSDQTQSSNSVS 1027
                  89****************99887777444444444443 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.2
      AAA_21  246 alltallralkkgsllliDEpEngLHP...kllrrllell....kelsr...............ngaQviltTHSpll 301 
                  a++ al r    +++l++DE  + L+     l+r  ++ l                        +   vil THS + 
  KKY15702.1 1132 AIARALVRK---PRVLILDEATSALDSvsaGLIRDSIRSLldpvQ---HpnhpqhtnrhdpeapKPLAVILITHSREM 1203
                  444444444...499*****9999999777444444444434441...144455566788888999999999999766 PP

>> DUF3987  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.012       7.3      39      63 ..     242     266 ..     231     277 .. 0.88
   2 !    7.4   0.0    0.0033         2      33      57 ..     984    1008 ..     965    1012 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.012
     DUF3987  39 tlvvapsGerKSpvdklvlrpleei 63 
                 t+ ++ sG++KS+v +l++r  e+ 
  KKY15702.1 242 TFLAGKSGSGKSTVGNLIMRFYEPT 266
                 7899****************98875 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0033
     DUF3987   33 eplnLytlvvapsGerKSpvdklvl 57  
                   p+n  t++v++sG++KS++++l+l
  KKY15702.1  984 IPPNGCTAIVGQSGSGKSTIASLLL 1008
                  599999**************98876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.062        37       3      23 ..     243     263 ..     241     323 .. 0.78
   2 ?    5.7   0.0     0.023        14       4      23 ..     992    1011 ..     990    1025 .. 0.85
   3 ?    0.4   0.0         1     6e+02      63      85 ..    1138    1160 ..    1102    1203 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.062
                 EEE--SSSSHHHHHHHGGGGB CS
       AAA_5   3 lLvGppGtgKselaerlaaal 23 
                 +L G++G+gKs++   + +++
  KKY15702.1 243 FLAGKSGSGKSTVGNLIMRFY 263
                 89***********99998887 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.023
                  EE--SSSSHHHHHHHGGGGB CS
       AAA_5    4 LvGppGtgKselaerlaaal 23  
                  +vG++G+gKs++a  l+ ++
  KKY15702.1  992 IVGQSGSGKSTIASLLLGFY 1011
                  79************998776 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 1
                  --G-SEEEEESGGG--HHHHHHH CS
       AAA_5   63 aregeilvlDEveraesevlnsL 85  
                  +r++++l+lDE + a ++v + L
  KKY15702.1 1138 VRKPRVLILDEATSALDSVSAGL 1160
                  569**********9998887665 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0     0.006       3.6       2      24 ..     239     261 ..     238     290 .. 0.86
   2 ?    4.3   0.2     0.057        34       7      22 ..     992    1007 ..     987    1012 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.006
                 -EEEEEESSTTSSHHHHHHHHHH CS
  APS_kinase   2 gvvvwltGlsgsGKstianalek 24 
                 g + +l+G sgsGKst+ n + +
  KKY15702.1 239 GETTFLAGKSGSGKSTVGNLIMR 261
                 56889************998765 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.057
                  EESSTTSSHHHHHHHH CS
  APS_kinase    7 ltGlsgsGKstianal 22  
                  + G sgsGKstia  l
  KKY15702.1  992 IVGQSGSGKSTIASLL 1007
                  679**********876 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0048       2.9      27      73 ..     243     290 ..     239     387 .. 0.73
   2 ?    4.1   0.2     0.037        22      28      47 ..     992    1011 ..     988    1041 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0048
                 EEEESTTSSHHHHHHHHHHHCS--.....--HHHHHC.CHHHHHHHHHHHHHH CS
     G-alpha  27 lllGqseSGKsTilkqlkllykkg.....fseeelat.wraviqlnivrsikt 73 
                  l G+s+SGKsT+ + + ++y+++     ++  ++a+  ++++++n      t
  KKY15702.1 243 FLAGKSGSGKSTVGNLIMRFYEPTsgqifIDATDIAElDTNWLRNN-----VT 290
                 588******************9996666433344444333344433.....33 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.037
                  EEESTTSSHHHHHHHHHHHC CS
     G-alpha   28 llGqseSGKsTilkqlklly 47  
                  ++Gqs+SGKsTi   l  +y
  KKY15702.1  992 IVGQSGSGKSTIASLLLGFY 1011
                  79**********87766555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.048        29       3      17 ..     243     257 ..     242     306 .. 0.88
   2 ?    6.0   0.1     0.021        12       4      20 ..     992    1008 ..     990    1018 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.048
      AAA_33   3 llvGlpGsGKstlae 17 
                 +l G +GsGKst+  
  KKY15702.1 243 FLAGKSGSGKSTVGN 257
                 689*********865 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.021
      AAA_33    4 lvGlpGsGKstlaerll 20  
                  +vG +GsGKst a  ll
  KKY15702.1  992 IVGQSGSGKSTIASLLL 1008
                  79*********998765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.12        74       3      21 ..     243     261 ..     241     299 .. 0.81
   2 ?    7.7   0.1    0.0061       3.6       3      21 ..     991    1009 ..     989    1034 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.12
                 EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   3 aivGrpNvGKStLinaltg 21 
                  ++G++ +GKSt+ n +++
  KKY15702.1 243 FLAGKSGSGKSTVGNLIMR 261
                 589**********999886 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0061
                  EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1    3 aivGrpNvGKStLinaltg 21  
                  aivG++ +GKSt+ + l+g
  KKY15702.1  991 AIVGQSGSGKSTIASLLLG 1009
                  8*************99998 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.2    0.0097       5.8      20      54 ..     241     275 ..     233     419 .. 0.70
   2 ?    3.4   0.0     0.091        54      19      37 ..     988    1006 ..     980    1015 .. 0.85
   3 ?   -2.3   0.0         5     3e+03      83     100 ..    1135    1152 ..    1110    1163 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0097
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrviglAp 54 
                 +++l G  G+GK+t+ + + + +e   g++++ A 
  KKY15702.1 241 TTFLAGKSGSGKSTVGNLIMRFYEPTSGQIFIDAT 275
                 67899******************999777776665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.091
      AAA_30   19 rvavltGpAGtGKttalka 37  
                   +++++G  G+GK+t+ + 
  KKY15702.1  988 GCTAIVGQSGSGKSTIASL 1006
                  5789***********9765 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 5
      AAA_30   83 rarlepgtllivDEagmv 100 
                  ra +++ ++li DEa  +
  KKY15702.1 1135 RALVRKPRVLILDEATSA 1152
                  344556699999999765 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2      0.15        87      61      89 ..     368     396 ..     334     397 .. 0.69
   2 ?    7.0   0.2     0.011       6.8      61      81 ..    1138    1158 ..    1100    1166 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.15
     SbcCD_C  61 epalrlvfLDEAFsklDeesiatllelle 89 
                  ++  +++LDE  s lD+ +++++++ ++
  KKY15702.1 368 LRDTPILILDESTSALDNITRTSIMASIR 396
                 34456899999999999999998887765 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.011
     SbcCD_C   61 epalrlvfLDEAFsklDeesi 81  
                   +++r+++LDEA s lD+ s+
  KKY15702.1 1138 VRKPRVLILDEATSALDSVSA 1158
                  3469*************8765 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.019        11      23      54 ..     240     272 ..     226     290 .. 0.72
   2 ?    4.7   0.0     0.038        23      26      43 ..     991    1008 ..     977    1032 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.019
                      S-EEEECSTTSSHHHHHHHHHHHSTT.TTS-EE CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheaskr.kekpfv 54 
                       ++++ G+sG+GK+++ ++i +  +  + + f+
       KKY15702.1 240 ETTFLAGKSGSGKSTVGNLIMRFYEPtSGQIFI 272
                      57899**************99955540445555 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.038
                       EEECSTTSSHHHHHHHHH CS
  Sigma54_activat   26 litGesGtGKellaraih 43  
                        i+G+sG+GK+++a+++ 
       KKY15702.1  991 AIVGQSGSGKSTIASLLL 1008
                       599***********9873 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0054       3.2     133     194 ..     243     306 ..     237     309 .. 0.79
   2 ?    2.5   0.0       0.1        61      79     152 ..     931    1010 ..     918    1016 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0054
       T2SSE 133 lvsGgTgsGKttllyallkeinks.derivtvEDpvEiqle.ganqvqlnakkakvtfadllra 194
                  ++G  gsGK+t+ + ++ + + +  + ++ + D +E++ +   n v l++++ ++  ++ lr+
  KKY15702.1 243 FLAGKSGSGKSTVGNLIMRFYEPTsGQIFIDATDIAELDTNwLRNNVTLVQQQSQLFKETILRN 306
                 579*****************9988345557799*9**999525677777777687777777776 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.1
       T2SSE   79 rlrvvllPvvag..ealviR..kksakeltlddlgaeealk..ekiaevlrkavrerglilvsGgTgsGKttllyallke 152 
                   ++++ lP+      +  iR   + + ++++++l+++   +   +  + l   +  +g   + G  gsGK+t++  ll +
  KKY15702.1  931 LFKLANLPLGVSheYSGNIRlpTNCNVDISFNNLSFSYPIRpeSHALRDLTLDIPPNGCTAIVGQSGSGKSTIASLLLGF 1010
                  566666665544224456776666667777777777766552234445566667788889999**********9988865 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0       0.2   1.2e+02      30      58 ..     246     272 ..     244     276 .. 0.70
   2 ?   -2.8   0.0         9   5.4e+03     182     212 ..     381     415 ..     289     422 .. 0.63
   3 ?   10.4   0.9   0.00082      0.49      26      44 ..     990    1008 ..     988    1011 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.2
       DUF87  30 gsTGsGKSntvavLleellekkgatilil 58 
                 g++GsGKS+ v+ L+ + + ++ +  + +
  KKY15702.1 246 GKSGSGKST-VGNLIMRFY-EPTSGQIFI 272
                 89******5.677777777.555555555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 9
       DUF87 182 f...snsstdliallleklekegkitii...dlsgvd 212
                       + t+++a++   ++++g+ tii   d+s+++
  KKY15702.1 381 SaldNITRTSIMASI--RKWRKGRTTIIithDMSQIK 415
                 234455666777777..56666666666567777665 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00082
       DUF87   26 lAilgsTGsGKSntvavLl 44  
                  +Ai+g++GsGKS+ +++Ll
  KKY15702.1  990 TAIVGQSGSGKSTIASLLL 1008
                  59***************97 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.022        13       4      24 ..     244     264 ..     243     304 .. 0.70
   2 ?    4.0   0.3     0.061        36       3      19 ..     991    1007 ..     989    1026 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.022
         PRK   4 vagsSGaGkttvarklekifg 24 
                 +ag+SG+Gk+tv + +    +
  KKY15702.1 244 LAGKSGSGKSTVGNLIMRFYE 264
                 69**********998877665 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.061
         PRK    3 gvagsSGaGkttvarkl 19  
                  ++ g+SG+Gk+t+a  l
  KKY15702.1  991 AIVGQSGSGKSTIASLL 1007
                  799*********99765 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.063        38       2      20 ..     243     261 ..     242     285 .. 0.84
   2 ?    4.8   0.0     0.062        37       3      18 ..     992    1007 ..     990    1028 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.063
  RNA_helicase   2 wlyGpsgeGKStlakeLak 20 
                   +l G+sg GKSt+ + +++
    KKY15702.1 243 FLAGKSGSGKSTVGNLIMR 261
                   689**********998765 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.062
  RNA_helicase    3 lyGpsgeGKStlakeL 18  
                    ++G+sg GKSt+a  L
    KKY15702.1  992 IVGQSGSGKSTIASLL 1007
                    79**********9986 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1      0.15        87       6      20 ..     243     257 ..     239     276 .. 0.82
   2 ?    6.3   0.0     0.012       7.2       6      22 ..     991    1007 ..     987    1032 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.15
      AAA_24   6 liyGpsgiGKTtlak 20 
                 ++ G+sg+GK+t+ +
  KKY15702.1 243 FLAGKSGSGKSTVGN 257
                 799*********876 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.012
      AAA_24    6 liyGpsgiGKTtlakel 22  
                  +i+G+sg+GK+t+a+ l
  KKY15702.1  991 AIVGQSGSGKSTIASLL 1007
                  89***********9876 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0       0.2   1.2e+02      42      57 ..     242     257 ..     222     261 .. 0.83
   2 ?   -1.4   0.0         2   1.2e+03     107     144 ..     283     320 ..     273     334 .. 0.79
   3 ?    5.3   0.0     0.018        10      37      56 ..     986    1004 ..     967    1011 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.2
                   EEEE--TTSSHHHHHH CS
  FtsK_SpoIIIE  42 llvaGatgsGKStaln 57 
                   + +aG +gsGKSt+ n
    KKY15702.1 242 TFLAGKSGSGKSTVGN 257
                   5689********9754 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2
                   HHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHT CS
  FtsK_SpoIIIE 107 raleeLvkemeeryalfreagvrsiaaydgeiaedpld 144
                   + l++ v ++++  +lf+e+  r+ia+++ e  ++ l+
    KKY15702.1 283 NWLRNNVTLVQQQSQLFKETILRNIAFGRHEYHSVTLE 320
                   56777788999999*************77777666555 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.018
                    GS-.SEEEE--TTSSHHHHH CS
  FtsK_SpoIIIE   37 kmashllvaGatgsGKStal 56  
                    ++   + ++G +gsGKSt  
    KKY15702.1  986 PNG-CTAIVGQSGSGKSTIA 1004
                    443.689**********974 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.019        11      16      36 ..     236     256 ..     233     261 .. 0.93
   2 ?   -1.4   0.1         2   1.2e+03     137     175 ..     384     422 ..     374     429 .. 0.77
   3 ?    3.8   0.0     0.053        32      16      36 ..     984    1004 ..     979    1008 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.019
      ATPase  16 ipegrvvlitGepGtGKtifa 36 
                 +p g+++ ++G++G+GK++++
  KKY15702.1 236 FPAGETTFLAGKSGSGKSTVG 256
                 899***************987 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2
      ATPase 137 eavaReilrqlvrvlkklgvTailvsekssseeaaggyg 175
                 ++ +R+ ++  +r  +k ++T i++ ++s+ +++   y 
  KKY15702.1 384 DNITRTSIMASIRKWRKGRTTIIITHDMSQIKRGEFVYV 422
                 677899999999999999999999999888666555555 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.053
      ATPase   16 ipegrvvlitGepGtGKtifa 36  
                  ip +  + i+G++G+GK+++a
  KKY15702.1  984 IPPNGCTAIVGQSGSGKSTIA 1004
                  67777899**********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.52
# Mc/sec: 7251.28
//
Query:       KKY15703.1  [L=319]
Description: putative apospory-associated protein c [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-38  132.6   0.0    2.3e-38  132.2   0.0    1.1  1  Aldose_epim      Aldose 1-epimerase
  ------ inclusion threshold ------
       0.01   15.7   0.1      0.024   14.5   0.1    1.6  1  Glyco_hydro_65C  Glycosyl hydrolase family 65, C-terminal dom
       0.12   12.4   0.1        0.2   11.6   0.1    1.4  1  Pox_C7_F8A       Poxvirus C7/F8A protein


Domain annotation for each model (and alignments):
>> Aldose_epim  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.2   0.0   3.8e-42   2.3e-38       9     298 ..      34     313 ..      26     316 .. 0.91

  Alignments for each domain:
  == domain 1  score: 132.2 bits;  conditional E-value: 3.8e-42
                  TEEEEEECTCTTEEEEEEETT.STEESB-B-STHHHHHHSCCSSCEECSS-SEEETTEEEETTEEEECCCCBT.......TTCEETBSGGGSB-EEEE CS
  Aldose_epim   9 aglsakislyGAtllslkvpdkeqrevllgsddaeeylkdsyfgatlgrvanRianGeFeldGkpyqlpqnee.......gknplHGgargreWevee 99 
                   g s+++ lyGAt++s+k  +  ++e l++s++          + ++g++a+R   G     G+p  +p++++       + +p+HG+ar ++We   
   KKY15703.1  34 SGESVTVHLYGATVTSWKLAG--GEEQLFLSSK----------AKLDGSKAIR---G-----GIPLVFPVFGPppkhhatSALPQHGFARTSTWEFLG 111
                  5789*****************..88********..........6*********...8.....************************************ PP

                  EEE..............TTEEEEEEEEEEETCHC...STSEEEEEEEEEEETTEEEEEEEEEEESS.S-EEEEEEEEEEEETSSCTCTGGEEEEEEEE CS
  Aldose_epim 100 vke..............ddgvtvslvlkpdgeeg...ypgdlevrvtytLnednelkieyeatndg.kptpfnltnHtYFnlsgesidshelqieade 179
                  +++              + ++ + l+++  + e    +p+++ + +++tL +d  l+  ++++n+g +++ f   +HtY+ ++    d+++ q+e+++
   KKY15703.1 112 KSTsesfgksdksksddCVKLDFGLSSSMLDAEAtkaWPYNFGLVYSVTLYKDA-LETNMHVQNKGsEAFEFMCLFHTYLKIK----DITKTQVEGLK 204
                  99999*******9774444444444443333333678***************99.****************************....*********** PP

                  EEEECTTSGEEEEEEECTTCCCCCCSSEEHCSSETEEEEEEEESSCSEEEEEETTTTEEEEEEEETTSSEEEEEECTTTT..SEECCEEESSECTCET CS
  Aldose_epim 180 ylevdeeliptgelkdvkgtpfdfrqpkaigedlkglDhayllksklkaviidpdkksgiklevsttepalvvytgnflk..kylsreglaletqmlp 275
                    ++ +         +v +++++++++++i+  + ++D++y++  ++ +v ++ + k ++++  ++   +  v++++ +k  ++ +  +   +++m++
   KKY15703.1 205 SKKYID---------KVRSAQTFTEESATIPISS-EVDRVYTSLDPTSPVTVLESGKPSFSVVREGIT-DCTVWNPWAEKaaGMSDFGPEGAWKNMIC 291
                  ******.........9999***999999999998.*******99989999999999999999999999.99***********99************** PP

                  CCCECHHHT-EEEHTTTEEEEEE CS
  Aldose_epim 276 depnhpefpsivlkpGesysaet 298
                  +ep+++ +  + l++G  ++ ++
   KKY15703.1 292 VEPGQVSSF-TKLEAGDAWEGTQ 313
                  *******99.*********9875 PP

>> Glyco_hydro_65C  Glycosyl hydrolase family 65, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1     4e-06     0.024      23      50 ..      21      48 ..      20      48 .. 0.96

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4e-06
                     EEEESSEEEEEEESSSTEEEEETTEEEE CS
  Glyco_hydro_65C 23 VrvtpeevtvtlesgepltievyGeevt 50
                     V++t  +vt +l sge +t+++yG +vt
       KKY15703.1 21 VDITGSTVTAKLYSGESVTVHLYGATVT 48
                     99**********************9997 PP

>> Pox_C7_F8A  Poxvirus C7/F8A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   3.4e-05       0.2      75     139 ..     203     270 ..     156     275 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.4e-05
                 EEEE-SS-EEEEEEEEESS-EEEEEES--SHHHHTTS-E...EEEETTTTEEEEEE-TTB--EEESS- CS
  Pox_C7_F8A  75 lvkeslveviYsavlniesksvielysdtdeefkekYPt...ikinvekkkykvkekgrtyvriespi 139
                 l +++++ ++ sa+  +e+ ++i + s++d+ +++  Pt     ++  k  ++v+ +g t   + +p 
  KKY15703.1 203 LKSKKYIDKVRSAQTFTEESATIPISSEVDRVYTSLDPTspvTVLESGKPSFSVVREGITDCTVWNPW 270
                 336788999*************************97765221566777889********999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 1967.67
//
Query:       KKY15704.1  [L=2150]
Description: putative purine permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-103  346.5   0.9   2.8e-103  345.8   0.9    1.3  1  Rif1_N           Rap1-interacting factor 1 N terminal
      1e-52  179.2  29.3    2.1e-52  178.1  29.3    1.6  1  Xan_ur_permease  Permease family
     0.0012   19.2   2.9     0.0012   19.2   2.9    3.0  3  MFS_MOT1         Molybdate transporter of MFS superfamily


Domain annotation for each model (and alignments):
>> Rif1_N  Rap1-interacting factor 1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.8   0.9  4.7e-107  2.8e-103       1     374 []     585     958 ..     585     958 .. 0.98

  Alignments for each domain:
  == domain 1  score: 345.8 bits;  conditional E-value: 4.7e-107
                 ...........HHHHHS---BGGG....HHHHHHHHHHHHHHHHHHHTSSSSS---HH..HHHHHHHHHHHHHSSHHHHHHHTTHHHTHHHHHHTTTTT CS
      Rif1_N   1 lagsdrssrlDaYmtLlraLkasdnlpdrkalqkkmslllqfiqrDisssssekgnldssLviqAlkllgtllsnpaiastLsddfkvfiidhsirsle 99 
                 la  +rs  lDaY tL+++ ka++++p+ ++l+++++ l+++i+rD++++ s++g +dssL+++Alk+ ++l++ +++as L+d+f++f++d+si +le
  KKY15704.1 585 LATGNRSTSLDAYATLAGTVKAYNDIPEGAKLKEQLQNLCKYIRRDLQNEASDSGIIDSSLITSALKVAVILVWDKSFASFLTDEFRSFLLDRSILALE 683
                 577899********************************************************************************************* PP

                 STT--HHHHHHHHHHHHH--THHHHS-HHHHHHHHTTCCS--.----HHHHHHHHHHHHHHHHHSHHHHHHTHHHHHHHHHHHHHHHHHTTT-HHHHHT CS
      Rif1_N 100 dsstpKniithllsvlsqQkFsskimtservkrllsalenieervkgksiiaerlniyrrLleqapslmlahaelWlpdlfsgllssvkdirekaiqlg 198
                 d++tpK+i+ h++++l++Q+F+++imt++r++r l+al++i+erv+gk++++er ++yr++ eq+  +m ++   W++dl++g+ ++  +ir+ka+ +g
  KKY15704.1 684 DAKTPKAIVLHYVHLLATQNFKANIMTKARANRCLEALRTITERVSGKNVVSERYMVYRKFTEQTTTVMKEKNF-WIEDLLEGMCNNTGEIRIKALGFG 781
                 ************************************************************************99.************************ PP

                 TSBHHHHS-HHHHTTS---SHHHH-TTT-BHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH-S.TTGGGGSHHHHHHHHHHHHHHTTS-HHHHHHH CS
      Rif1_N 199 leaalalgkekevskavlelldseleegktlievlierLkkmlkekknekivpqiWsvvilLlrkk.rkslesweffnewLkliqkcFnssdpevkieA 296
                 + +++al ++ +vs+ ++++l++++e+g++++  l+ rL+k+++ + ++++vp++W+vv+ Llr++ ++++e++++++++L +iqkcFns++ ++++ A
  KKY15704.1 782 MAVSTALDSSASVSRDLKKILNRPIEQGQNYGARLTHRLMKIMEIDGEGQAVPKMWAVVVRLLRGNnLEQFERSKHLKSLLLVIQKCFNSTSADIRASA 880
                 ********************************************99*****************9751677889************************** PP

                 HHTTHHHHHHHHHS--TT-HHHHHTTHHH........HHHTSHHHHHHHHHHHHHHHHHHHTT-TTTHHHHHTTTTTH CS
      Rif1_N 297 niaWnrliyavnpdestskkllklLrqPllsqlerkkesksakelreavlsslcnllyyalrplasakqldlvWdevv 374
                 ++aW+ +i  v+p+++t ++l+k+L++P++ ql+r  + +s+k+ r  + s +c ll+y++rp+a+++q+ ++++ +v
  KKY15704.1 881 YHAWSQFISIVRPSDKTPEQLRKMLLSPIAPQLNRADTGNSTKSNRTSAASAYCCLLFYSFRPSAPNEQYTQLFQVYV 958
                 **************************************************************************9997 PP

>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.1  29.3   3.6e-56   2.1e-52       3     387 ..     123     546 ..     121     548 .. 0.92

  Alignments for each domain:
  == domain 1  score: 178.1 bits;  conditional E-value: 3.6e-56
                      HHHHHHHHHHHHHHHHHHHHHTTTS-...........H.HHHHHHHHHHHHHHHH.........HTTT-----EEE-GGGHHHHHGGG-..... CS
  Xan_ur_permease   3 llllglQhllamfaalvvvPllvgda.lgl.aeelrqlisatllasGiatllqll.........ifgirlpillgssfafvtalmialGsa... 82 
                      +++lglQh l m++++v +Pl ++     l +e++++l+sa+++++Giat +q++         ++g++l ++ +++f  ++++ +++ +    
       KKY15704.1 123 TIILGLQHALSMIGSVVSPPLAIAGGaFYLsSEQTSYLVSAAFITTGIATAIQVTrvhikgtsfYIGTGLLSVVAPTFDIIAVVYSYTNMRynk 216
                      699******************998774555688888**********************************************888888876899 PP

                      .............HHHHHHHHHHHHHHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-....BTT........... CS
  Xan_ur_permease  83 ...........edieialagllgallvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaa..veg........... 152
                                     +a +++lg++l  + ++il+sl+  r  l +++p +vtg+++ll+G  l+  ++++ gg      + g           
       KKY15704.1 217 gtcptaedgtqLPCPEAWGAVLGTMLCTVWIQILMSLVPPR-LLNKVFPKIVTGALLLLVGVYLVGNGMNNWGGSSNCngGTGyyalcpnidap 309
                      999**999988778999***********************8.*****************************99874211111133333334556 PP

                      ...B---HHHHHHHHHHHHHHHHHHHSSSTTTTTHHHHHHHHHHHHHHHHHHHTTSSHHHHS-SS-----------HH..H.HHHHTHHH.HHH CS
  Xan_ur_permease 153 ..ltvvslkllllavvvllvilllsvflkglfsqlpiLigiiagwllalfmgivnlspevseapwfqlpsplkfgtplfnlgliltvlavalva 244
                        l+ +++kl++l++ v   i+++  f ++++++ ++L+g+++g++++ ++g  + ++ +++ap +++     f+ + ++ +l+l +l++++  
       KKY15704.1 310 rpLPWGDPKLIGLGFSVFFSIIIVEQFGSPMMKSASVLFGLAVGCIISGATGYWSKTN-IDSAPAVTFLWVHTFKLS-VDGALVLPLLIMFICE 401
                      77899***********************************************999999.999999888666666666.99************** PP

                      HHHHHHHHHHHHHHHTS-TII...IIIHHHHHHHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS CS
  Xan_ur_permease 245 vvesvGdiravakvvgrslkp...kpdlrralladGlatllsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssI 335
                       v+ + di a+a++++ ++++   +++++ ++l dGl++l+s+l  +lp+ + a n+Gv+ lt+ asrr + +a+ +lil+gl++k++a + + 
       KKY15704.1 402 GVSCMPDILATAEISDVDVEGtefNSRIQGGILCDGLGSLISALGTGLPMVAQAGNNGVIVLTGCASRRAGWCASGFLILMGLFGKFGAVFGAM 495
                      ********************************************999*********************************************** PP

                      -HHHHHHHHHHHHHHHHHHHHHHHHHTTS-SHHHHHHHHHHHHHHHH----- CS
  Xan_ur_permease 336 PepvlgGvllvvfgmiaasgvsnlqtvdldsarnllivavslvlGlgvatvp 387
                      P+ vlgG+ + ++++i+++g++ l  v ++ +rn +i+ +s+++Gl+ +++p
       KKY15704.1 496 PSSVLGGMQVFLYSTIVVAGIRVLGLVPFT-RRNRFILTCSVGIGLIDVVQP 546
                      ******************************.***************988776 PP

>> MFS_MOT1  Molybdate transporter of MFS superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   1.6       1.6   9.5e+03      45      86 ..     134     178 ..     121     200 .. 0.53
   2 ?    1.8   0.6     0.051   3.1e+02      88     111 .]     256     279 ..     226     279 .. 0.71
   3 !   19.2   2.9     2e-07    0.0012      29     106 ..     429     506 ..     400     508 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.6
    MFS_MOT1  45 lfggvPmc..hgAgglaaqyrf.gartgaagillGlvllllgltg 86 
                 ++g v  +  ++Agg+     +  + +++a++++  +  ++ +t+
  KKY15704.1 134 MIGSVVSPplAIAGGAFYLSSEqTSYLVSAAFITTGIATAIQVTR 178
                 444444445666666665533334444444444444444444444 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.051
    MFS_MOT1  88 lerllrliPksvlgglllgaGleL 111
                  + l++++Pk v g+lll +G+ L
  KKY15704.1 256 PRLLNKVFPKIVTGALLLLVGVYL 279
                 4678999*************9865 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 2e-07
    MFS_MOT1  29 ltalllsvGlmnlltglfggvPmc..hgAgglaaqyrfgartgaagillGlvllllgltgllerllrliPksvlgglllg 106
                 ++  +l  Gl  l+++l  g+Pm   +g  g++     g  +  ag + + +l+l+gl+g + ++  ++P svlgg++++
  KKY15704.1 429 IQGGILCDGLGSLISALGTGLPMVaqAGNNGVIVL--TGCASRRAGWCASGFLILMGLFGKFGAVFGAMPSSVLGGMQVF 506
                 555566678999************55555577777..9****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.16u 0.32s 00:00:01.48 Elapsed: 00:00:00.54
# Mc/sec: 12088.54
//
Query:       KKY15705.1  [L=676]
Description: putative guanine nucleotide exchange factor synembryn [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     1e-116  390.8   0.2   1.4e-116  390.3   0.2    1.2  1  Ric8          Guanine nucleotide exchange factor synembryn
    5.9e-21   75.2   0.2      1e-20   74.4   0.2    1.3  1  Amidohydro_1  Amidohydrolase family
      2e-11   44.1   0.0    2.6e-09   37.1   0.0    2.5  2  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Ric8  Guanine nucleotide exchange factor synembryn
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  390.3   0.2  2.3e-120  1.4e-116       2     458 ..     246     662 ..     245     663 .. 0.93

  Alignments for each domain:
  == domain 1  score: 390.3 bits;  conditional E-value: 2.3e-120
        Ric8   2 LetLkilgRdpkgldplftkeaistLlklafdssstsaslekeseeevareAlrcLaNalllsekarqrlverlkggeekavellkkdksspadiefld 100
                 Le+Lki+gRdp+++dp+f +e++++L+++af ++s ++s          reA+rcLaN+ ll +k  q++ve    +  ka++ lk+    ++d+efl 
  KKY15705.1 246 LEQLKIYGRDPRDADPIFAPESVEILCQFAFGEQSLKTS----------REAMRCLANTFLLRPKLVQTFVE--HDFCGKAADCLKS---REDDDEFLL 329
                 9**************************************..........***********************..6567777777874...59******* PP

        Ric8 101 sRllFLlTaleseirkelkelveeesllaealeqilkrkakevsssdeaasslskeesealselLKllFnltlhypksvldeeeaeelseklarllppl 199
                  R+lFL+T+  s+++  +  lve+++ la +++++l r+ + +  s ++ + ++++e++alse LKl++n+t+h+p          +l ++++++l  l
  KKY15705.1 330 CRILFLTTYG-SKAD--FPMLVEKHD-LAGSIKAHLLRHDELII-SRKEGQVAPPMENMALSENLKLIYNVTHHHP----------DLIPSFNPSLEVL 413
                 **********.9989..*********.**************655.899999*************************..........67788******** PP

        Ric8 200 lrlllllpipspdpLkpplthlinaLlnlpleeskkeaalfpss..aegnnmdvvsrllelldkrlaaadekkdkdaeleekltpllllLtklaeaa.e 295
                  +ll ++ +p+p pL+pp+t lina++ l++e++++++++ ++    +++  + ++rl+ +ld +l+ ++      ++le+  +pl+l+L+k+++ a +
  KKY15705.1 414 SNLLSHITLPTP-PLQPPITFLINAISQLDFETRDNDSTS-STTlfITSDTDSPLNRLIIILDASLSLPA------SDLETLASPLILVLRKIYSTApN 504
                 ******9*****.9*****************888777543.2224666799999************7766......569******************99 PP

        Ric8 296 evRkylrerlLPplrDrskrlekgdtlrgrllRlmtsvstprlkdavaelLFvLckedasrlvkyvGYGnaAGfLankgllsaqpeyssdsedsdteey 394
                  +++yl++ lLPp  Dr+ +l+++++l++rllRl t+++tp+l++a++ ++F+L+ +d++++v+++GYG+a+G+L+++++++  p+ s    ++ t+++
  KKY15705.1 505 ATKQYLQTTLLPPATDRDLPLGQSSSLSSRLLRLTTNAMTPNLREAISGMYFELSSQDPTTFVNNIGYGFASGYLMSHNIAV--PSLS----TDPTNNT 597
                 9*********************************************************************************..6653....4459999 PP

        Ric8 395 kqakraiNPiTGqveeeee.enpleeMTeeEKErEAerLfvlfdrlektgviqvenPvekagedG 458
                 +++ ++iNP+TGq   +e+  +p  +MTeeEKErEAerLfvlf+rl+ tgv++venPv++a+++G
  KKY15705.1 598 NSSTDPINPVTGQRLSAEPtIDPSAGMTEEEKEREAERLFVLFERLRATGVVNVENPVARAMREG 662
                 *******************99999***************************************99 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.2   1.7e-24     1e-20     205     343 ..      12     145 ..       2     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 1.7e-24
                   HHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHHTSCEEEEEECTTSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TT CS
  Amidohydro_1 205 llkerlkeagvahcpfsnsilrsgrealrkaldeGvkvglgtDgaasgnslnlleelrlalklqrgllyedeegglslkealrmaTingAkalgldd 301
                   ll+    +a vah p+sn +l+sg++++ ++l+ Gvkv+lgtDga ++n+         a+              + + ++l+maT+ gA algl++
    KKY15705.1  12 LLRST--GATVAHNPASNCKLGSGIAKVPEMLKGGVKVSLGTDGAPCNNTD-------AAV--------------VNADDVLEMATLAGATALGLEK 85 
                   66666..899*********************************66555444.......566..............899******************* PP

                   TSSSS-TTSB--EEEECC...CT...............CGGGTTTCTSEEEEEEEETTEE CS
  Amidohydro_1 302 kvGsievGkdADlvvvdl...di...............laafvglkkdgnvkkvivkGkl 343
                   ++Gs+evGk+AD+vvv++   +                 +++v++ +   v  v+v+G+l
    KKY15705.1  86 DIGSLEVGKKADFVVVNPgglHCapfeaeqclrggldpVTTLVYSCSGADVELVVVDGQL 145
                   ****************8886611557778888888888********************87 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   4.3e-13   2.6e-09     355     472 ..      32     146 ..      12     147 .. 0.84
   2 ?   -4.2   0.0       1.4   8.3e+03     130     157 ..     219     248 ..     212     251 .. 0.74

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 4.3e-13
  Amidohydro_3 355 rgstpvkellnagvkvalgsDapvgpfdpwprigaavmrktrrggevlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvldadpld 451
                   +g++ v e+l+ gvkv+lg+D       p     aav                +   ++l + T  +A+algle+  G+LevG++AD+vv +   l+
    KKY15705.1  32 SGIAKVPEMLKGGVKVSLGTD-----GAPCNNTDAAV----------------VNADDVLEMATLAGATALGLEKDIGSLEVGKKADFVVVNPGGLH 107
                   566889999999999999999.....44555566777................466799*********************************99999 PP

  Amidohydro_3 452 vdppelaear..................vrltvvdGrvv 472
                   + p e  + +                  v+l+vvdG+ +
    KKY15705.1 108 CAPFEAEQCLrggldpvttlvyscsgadVELVVVDGQLL 146
                   9986544444999999999*****************976 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 1.4
  Amidohydro_3 130 angegatgllreg.afhlvldlapl.area 157
                   +n ++++g+l+e+ a + ++d+ ++   e+
    KKY15705.1 219 DNVKQLLGVLEEDlAKKTLSDGDRSsKLEQ 248
                   4566799*****999999988884435554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.49
# Mc/sec: 4154.98
//
Query:       KKY15706.1  [L=379]
Description: hypothetical protein UCRPC4_g06207 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.35s 00:00:00.92 Elapsed: 00:00:00.53
# Mc/sec: 2158.12
//
Query:       KKY15707.1  [L=427]
Description: putative cell wall glucanase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-45  153.1   4.0      1e-44  152.1   4.0    1.4  1  Glyco_hydro_16  Glycosyl hydrolases family 16
  ------ inclusion threshold ------
      0.071   12.9   0.4       0.11   12.3   0.4    1.2  1  TMEM51          Transmembrane protein 51
       0.22   11.5   1.5        3.7    7.6   0.1    2.4  2  PepSY_2         Peptidase propeptide and YPEB domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.1   4.0   1.7e-48     1e-44       7     176 ..      62     229 ..      56     230 .. 0.90

  Alignments for each domain:
  == domain 1  score: 152.1 bits;  conditional E-value: 1.7e-48
                     SEE-GGGEEEETTSEEEEEEEEEE.EEEEEECCEESSEEEEEEEE---STTEEEEEEEETGGTSTTEEEEEEEETT-TTEEEEEEEBTTBSGE.. CS
  Glyco_hydro_16   7 vtwsksavsvengetltltldkes.gsrikskksflyGkvearikaaksaGvvtafylssedekahdEiDiEflGndtgkvqtnvygkGkgkr.. 98 
                     +++++++++++++ ++++t++++  +++i+s++++ +Gk+e+ +kaa+++G+v++++l+s   ++ dE+D+EflG + ++vqtn++gkG++++  
      KKY15707.1  62 WNTTSGTIDYTEK-GAEFTINEKGdSPTIQSEFYIFFGKLEVIMKAANGTGIVSSIVLQS---DDLDEVDWEFLGGNHTTVQTNYFGKGDTSSyd 152
                     5556667777655.9*******998**********************************9...99**************************9767 PP

                     EEEEETSS-TTTS-EEEEEEEETTEEEEEETTEEEEEEESSHHH.HT.--EESEEEEEEEEEEBSHHH.SSE-EEEEEEE CS
  Glyco_hydro_16  99 ekrlslwfdptedfHtYaieWtpdkikfyVDgkpvrtltkkeae.evkyPqftpmkvavslwpgsdwa.teqgkvkidwa 176
                     +  ++ ++dp + +H+Y+++Wt+d+++++VDg+  rtl+ ++ae ++ yPq tpm+v +++w g+d++ +++g  +++wa
      KKY15707.1 153 RAIYYSVEDPMDGYHNYTVDWTSDRLNWMVDGEILRTLNYSSAEnGTRYPQ-TPMNVRLGIWVGGDSDlNSEG--TVEWA 229
                     788888*************************************96668***.************965515666..99998 PP

>> TMEM51  Transmembrane protein 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   1.8e-05      0.11      40     119 ..     291     371 ..     278     388 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.8e-05
      TMEM51  40 sanssskpdkdsgkeekksktssvAyVLvGaGvalL.lLsicLgirdkkrarqeeeelaraqeslqeeeeeqeeeesaeea 119
                  +ns+s+++k ++k ++ skt  vA+   +aGva+L +++ +++  ++++a ++e +la a+ ++q++e  q  +e + ++
  KKY15707.1 291 GNNSQSTSEKAKSKWNSLSKTAKVAIGSSAAGVAVLgVIAFAFCCIKQRKAGRRERALADAEYEKQTAELLQYRSELNRQR 371
                 3444455555566666689**************998789999988888888888888787777777666555555554444 PP

>> PepSY_2  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1   0.00061       3.7       3      35 ..      10      42 ..       8      47 .. 0.88
   2 ?    2.7   0.1     0.022   1.3e+02       4      40 ..     319     352 ..     316     360 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00061
     PepSY_2  3 alalalallaaaAlAgrrdtdspkadwlprekl 35
                al+la++++a+ AlA+  +++ p +++ p+ ++
  KKY15707.1 10 ALLLAILAIAPSALAQTYTDCNPLNETCPANQA 42
                7899999********999999999999998887 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.022
     PepSY_2   4 lalalallaaaAlAgrrdtdspkadwlpreklvakle 40 
                  a+ +a+l+  A+A   ++ + ++    re + a +e
  KKY15707.1 319 SAAGVAVLGVIAFA--FCCIKQRKAGR-RERALADAE 352
                 6899**********..45444444443.666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1039  (0.0579508); expected 358.6 (0.02)
Passed bias filter:                      704  (0.039266); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.35s 00:00:00.97 Elapsed: 00:00:00.49
# Mc/sec: 2601.74
//
Query:       KKY15730.1  [L=270]
Description: hypothetical protein UCRPC4_g06166 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.063   13.8   0.0      0.086   13.4   0.0    1.3  1  DUF3391   Domain of unknown function (DUF3391)
       0.11   12.9   0.0       0.25   11.7   0.0    1.5  1  NolB      Nodulation protein NolB
       0.15   12.0   0.1       0.27   11.1   0.1    1.4  1  S6PP_C    Sucrose-6-phosphate phosphohydrolase C-terminal
        1.4   10.0   0.1        1.4   10.0   0.1    2.3  2  DUF3484   Membrane-attachment and polymerisation-promoting sw


Domain annotation for each model (and alignments):
>> DUF3391  Domain of unknown function (DUF3391)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.9e-05     0.086     102     135 ..      99     166 ..      12     167 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.9e-05
     DUF3391 102 e..................................eleraeklyeeakqlvrslfsdvrlgkaidvep 135
                 +                                  e ++a k ye+  + ++ +fsd+++gk +++++
  KKY15730.1  99 SepiagersplgqsfnlgmaqyppetapspvpehmEAQDADKNYERFQARLKHIFSDIQAGKLVEAAK 166
                 05555555555555555555555555566666777****************************99876 PP

>> NolB  Nodulation protein NolB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.7e-05      0.25      42     132 ..      63     162 ..      53     167 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.7e-05
        NolB  42 qRataqasPlgDRvlqtlssl.........yrdnavtaaaldqevalvkgalpgPaqklpleadaaGaeasgvpqggkdfeamiaeLRdlYngvtqvaL 131
                 q  +aq  P+gD   +t+s++          ++n  + +++ ++ +l ++   g aq +p  a ++  e   ++++ k++e   a L+ +++++    L
  KKY15730.1  63 QYGAAQYYPPGDATANTISGVpthqyiggqLQQNEFSEPIAGERSPLGQSFNLGMAQYPPETAPSPVPEHMEAQDADKNYERFQARLKHIFSDIQAGKL 161
                 556777788888888888877222222222466777889999999*******************9999999*********************9987666 PP

        NolB 132 v 132
                 v
  KKY15730.1 162 V 162
                 6 PP

>> S6PP_C  Sucrose-6-phosphate phosphohydrolase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   6.1e-05      0.27      43     119 ..     141     218 ..     132     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.1e-05
      S6PP_C  43 ksdevlqklkaila..psgvlvhpsGvekslhesidalrklyGdkkgkkfrvWvDrvlssqigsdswlvkfdkwelsge 119
                 +++ + ++lk+i++  ++g lv +  v  +l++++ ++   yG  k+ k   + Dr+   +  +d wl+ f+k +   e
  KKY15730.1 141 NYERFQARLKHIFSdiQAGKLVEAAKVLYELTDWLSEIFIAYGLTKDDK-ELYQDRIEFWRRFNDCWLALFQKQKDLTE 218
                 5677778899998533799************************998766.7899******************9876444 PP

>> DUF3484  Membrane-attachment and polymerisation-promoting switch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   1.6      0.39   1.8e+03      16      43 ..      17      51 ..       2      61 .. 0.46
   2 ?   10.0   0.1   0.00032       1.4      29      65 ..     119     156 ..      85     156 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.39
     DUF3484 16 rrqPvdpqvqenpqvqeq.aqeqPv.......p.ske 43
                 +qP +  +q ++++ +  ++  P+       p +++
  KKY15730.1 17 GQQPSQ--SQYASYSSDVaYPSGPQapsyttiPqYQQ 51
                466666..33333333333344443211111111322 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00032
     DUF3484  29 qvqeqaqeqPvp.skeqeekepkkekltdrvkglFgnm 65 
                 q+ +++   Pvp + e++ ++++ e++  r+k +F+ +
  KKY15730.1 119 QYPPETAPSPVPeHMEAQDADKNYERFQARLKHIFSDI 156
                 4445555778887655566666999**********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1732.76
//
Query:       KKY15731.1  [L=577]
Description: putative ubiquitin c-terminal hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-50  171.5   0.0    2.9e-50  171.2   0.0    1.1  1  UCH          Ubiquitin carboxyl-terminal hydrolase
    2.8e-12   46.2   0.0    7.3e-12   44.9   0.0    1.8  1  ubiquitin    Ubiquitin family
    7.2e-11   42.2   6.4      7e-10   39.0   6.4    2.4  1  UCH_1        Ubiquitin carboxyl-terminal hydrolase
  ------ inclusion threshold ------
       0.15   12.6   0.0       0.67   10.4   0.0    2.1  2  Ubiquitin_2  Ubiquitin-like domain


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.2   0.0   6.5e-54   2.9e-50       2     257 .]     112     564 ..     111     564 .. 0.93

  Alignments for each domain:
  == domain 1  score: 171.2 bits;  conditional E-value: 6.5e-54
                 EES-SSSTHHHHHHHHHHHTSHHHH.HHHHTCHHCCSSTCCCCC-.....TT.TTS.TTHHHHHHHHHHHHHHSH-CCEE--HHHHHHHHHHSGGGT.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
         UCH   2 GlsNlGntCymnsvlQcLfsipelr.dyllsleevkkesrnkkel....nesnplgkkgelakalkdlfkellkskskavsPkklkktlsklaksfs.. 93 
                 Gl+NlGntCy+ns+lQ+L s+pe++ ++ l++ +v+  s+ ++ +         l++++ l  +l+dl+k+++ ++++ + P +++++l++  ++f+  
  KKY15731.1 112 GLKNLGNTCYLNSTLQVLRSVPEMQeELALYKPTVNGSSSLQNLSqfglG---GLQSSQDLTASLRDLYKQMT-ETQEGLPPYMFVNALRTAFPQFAqk 206
                 9************************9999997777766666644443321...3444557*************.59********************999 PP

                 ....SSSTCEHHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCTTSHHHHHH-EEEEE........................................... CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................... RF
         UCH  94 ....gykqqDaqEflaflLdqlhedlnrevaeekwkkhlkrndslitdlfegqlks........................................... 145
                      + qqDa+E ++++++ql ++l+         +++  n+ ++++ f g++ s                                           
  KKY15731.1 207 sntgHFAQQDAEEAWSQIISQLRQKLSI-------ADSSAPNSGFVDKYFAGKFVStvstpeapdepsaittdtflkldchidkdtnhlrdgllaglte 298
                 9*999*********************99.......7999999********************************************************* PP

                 .................EEEEEEB-SEEEEEEESEEETEE...EEE--SEEB--SEEE-GGGBSS-BTTS-TCS-B....................... CS
                 .................xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................... RF
         UCH 146 .................klklkrlPeiLiihlkRfsynss...ksKlntkvefpeeldlssylaeekkkkteekkk....................... 201
                                  + +++rlP++L++h+ Rf ++++   k K+ +kv+fp eld++++++ee kk+    ++                       
  KKY15731.1 299 aiekrseslgrdatytkTSRISRLPQYLTVHFVRFFWKRDvqkKAKIMKKVTFPAELDVTEFCTEELKKQLIPVRDkvreirkdeydaerarkrqkiah 397
                 *************************************9999999********************99999988777799********************* PP

                 .......................................................................................EEEEEEEEEES. CS
                 .......................................................................................xxxxxxxxxxx. RF
         UCH 202 .......................................................................................YeLiavvvHsG. 212
                                                                                                        YeL +v+ H+G 
  KKY15731.1 398 kqeedrkaeaaavaeaaplkkkkeleeqkgaeskgkvdvpsnemdvyktdaeyeaeraaaikaakkdlyalidqnlvsdvgsnksglYELRGVITHQGa 496
                 *************************************************************************************************** PP

                 CTTSEEEEEEEECTTTTE..................EEEEETTEEEEE-HHCCCTT........CEEEEEE CS
                 xxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxx........xxxxxxx RF
         UCH 213 slssGHYvayiknekngk..................WykydDetvkevkeeeevls........sayiLfY 257
                 s++sGHY++y+k  k gk                  W+ ++D+ v+ev++e ++++        sa iL+Y
  KKY15731.1 497 SADSGHYTSYVK--KTGKlvddpkapggkrreedgrWWWFNDDVVTEVEAE-KIETlagggeshSALILLY 564
                 ***********9..4455567777777777788888*************87.899999999999*****99 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   1.6e-15   7.3e-12       1      70 [.       6      74 ..       4      76 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 1.6e-15
                EEEEETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEES CS
   ubiquitin  1 itvktldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlr 70
                ++vk  +gk +++e+++s+t e++K ++ + +g+++++q+++ +G +L+d+  l++++ ++g t +++ +
  KKY15731.1  6 VKVK-HQGKLYDVELDPSTTGETFKFQLYSLTGVEPDRQKVLVKGGQLKDDTDLSSLKAKPGQTFMMMGT 74
                3455.79************************************************************976 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   6.4   1.6e-13     7e-10       1     317 [.     111     536 ..     111     539 .. 0.74

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 1.6e-13
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxx RF
       UCH_1   1 sGLEnhivnsYlNslLQvlyfipplr.nlalshlakeckkehcLlcElgflfdmldkakglncqasnFlralssipe.......asalglileeeeete 91 
                 +GL n  +++YlNs LQvl+ +p+++ +lal +     +  ++L    +f +  l+ ++ l+    ++ +++++++e        +al+    + ++++
  KKY15731.1 111 AGLKNLGNTCYLNSTLQVLRSVPEMQeELALYKP--TVNGSSSLQNLSQFGLGGLQSSQDLTASLRDLYKQMTETQEglppymfVNALRTAFPQFAQKS 207
                 7*************************99999998..66677777777788899********************99998888887888888755544444 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
       UCH_1  92 kssaislssliqsfnrflldqlekelketkknsseeesaieqllgtkaettirclkCgseksrksstlvldlkyPkpsne.kkeakvtfasilkssler 189
                 ++ + + +   + + + +++ql ++l+   ++s++++  +++ ++ k ++t++  +   e s  ++   l+l     +++  k++   + + l + l++
  KKY15731.1 208 NTGHFAQQDAEEAWSQ-IISQLRQKLSI-ADSSAPNSGFVDKYFAGKFVSTVSTPEAPDEPSAITTDTFLKL-----DCHiDKDT-NHLRDGLLAGLTE 298
                 4444444444445665.55677777655.4567899999****************66665533222222233.....33312333.3333333344433 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................... RF
       UCH_1 190 ekttrawCekCkryqpteqrktvknlPpvLalnakleeeeelelwkt.................................................... 236
                    ++   e+  r ++ ++++++ +lP+ L+++  ++      +wk+                                                    
  KKY15731.1 299 --AIEKRSESLGRDATYTKTSRISRLPQYLTVHFVRF------FWKRdvqkkakimkkvtfpaeldvtefcteelkkqlipvrdkvreirkdeydaera 389
                 ..3455567779999******************9986......33333444455677799**************************9999999999999 PP

                 ............................................xxxxxxxxxxxxxxxxxx.........................xxxxxxxxxxxx RF
       UCH_1 237 ............................................knwlpleiklsldedknl.........................eeklkeerekak 266
                                                              ++ ++e+++                                 +++l ++     
  KKY15731.1 390 rkrqkiahkqeedrkaeaaavaeaaplkkkkeleeqkgaeskgkVDVPSNEMDV-------YktdaeyeaeraaaikaakkdlyaliDQNLVSDVG--- 478
                 999999999999999999999998888887777777777776642333334333.......03333355778888888888886555444444444... PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxx RF
       UCH_1 267 aekeikvYeLqsvvvhigdskesghLvslvkvaekeler........dppesqWylFND 317
                  ++++  YeL++v+ h g s +sgh+ s+vk   k+ ++        ++++++W  FND
  KKY15731.1 479 -SNKSGLYELRGVITHQGASADSGHYTSYVKKTGKLVDDpkapggkrREEDGRWWWFND 536
                 .78899************9999*********877777768877776555555******* PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00015      0.67       8      49 ..      10      48 ..       4      67 .. 0.81
   2 ?   -2.8   0.0         2   9.1e+03      25      34 ..     224     233 ..     221     240 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00015
                 ETTSS.SEEEEEEETTSBHHHHHHHHHHHH---TTCEEEEEE CS
  Ubiquitin_2  8 ssltkavsserrfsksltieelKekLelitGtspasmrLqly 49
                 ++     + +  +++s t e +K +L+ +tG++p+ +++ ++
   KKY15731.1 10 HQGK---LYDVELDPSTTGETFKFQLYSLTGVEPDRQKVLVK 48
                 4444...778899*************************9876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2
                  BHHHHHHHHH CS
  Ubiquitin_2  25 tieelKekLe 34 
                   i++l++kL 
   KKY15731.1 224 IISQLRQKLS 233
                  5999***996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1292  (0.072062); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 3816.87
//
Query:       KKY15732.1  [L=155]
Description: putative arp2 3 complex 20 kda subunit (p20-arc) [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-67  224.1   2.7    8.3e-67  224.0   2.7    1.0  1  ARPC4     ARP2/3 complex 20 kDa subunit (ARPC4)
  ------ inclusion threshold ------
       0.18   11.5   0.1        6.8    6.4   0.0    2.1  2  TpcC      Conjugative transposon protein TcpC


Domain annotation for each model (and alignments):
>> ARPC4  ARP2/3 complex 20 kDa subunit (ARPC4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.0   2.7   9.2e-71   8.3e-67      31     166 ..       2     137 ..       1     138 [. 0.99

  Alignments for each domain:
  == domain 1  score: 224.0 bits;  conditional E-value: 9.2e-71
                 TT----HHHH---TTTB---EEEESSSS-EEEEEEBSSEEEEEEE----SSHHHHHHHHHHHHHGGGTTTSTTB-SS--TT-SEEEEEETTHHHHS-HH CS
       ARPC4  31 erhnkpevEvrkskelllkplviarsekekvliEssinSvRvSlkikqadelerillkkftrflmkraeafeilRrkpvegydiSfLitnehveklgkk 129
                 +rhn+pevE+++s+elll+pl++ar+e+ekvliE+s+nSvRvS++ikqade+e+il++kftrfl++rae+f ilRrkpv+gydiSfLitn+h+e++ k+
  KKY15732.1   2 QRHNVPEVEAGSSPELLLNPLTVARNENEKVLIEPSVNSVRVSIRIKQADEIENILVHKFTRFLTQRAESFFILRRKPVKGYDISFLITNTHTEEMLKH 100
                 89************************************************************************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH CS
       ARPC4 130 klidfiikFveeidkeiselklslnararivaeeflk 166
                 kl+dfii+F+ee+dkeise+kl lnarar+vae+fl+
  KKY15732.1 101 KLVDFIIQFMEEVDKEISEMKLFLNARARFVAESFLT 137
                 ***********************************95 PP

>> TpcC  Conjugative transposon protein TcpC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0   0.00076       6.8     182     228 ..      30      74 ..       6      75 .. 0.79
   2 ?    3.4   0.0    0.0063        56     122     167 ..      83     127 ..      76     135 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00076
        TpcC 182 dspkyykegqngevrvqvtvkfk.ketketltesftLtltktagrwfI 228
                 +++ +  + ++  vrv++++k + +e ++ l ++ft  lt++a+++fI
  KKY15732.1  30 EKVLIEPSVNS--VRVSIRIK-QaDEIENILVHKFTRFLTQRAESFFI 74 
                 55555556666..89999999.5699999******************9 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.0063
        TpcC 122 yepeqaeddedvdtetsqeieeFletFfklYatgdekeLsyyvkpg 167
                 y+ ++  +++++++ ++ ++ +F+ +F++  +++  +e++++++  
  KKY15732.1  83 YDISFLITNTHTEEMLKHKLVDFIIQFMEE-VDKEISEMKLFLNAR 127
                 5556666788999999**************.888899999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.48
# Mc/sec: 973.39
//
Query:       KKY15733.1  [L=532]
Description: putative high-affinity methionine permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-36  126.2  16.1      2e-36  125.7  16.1    1.1  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.7  16.1   1.1e-40     2e-36      94     409 ..      12     378 ..       1     386 [. 0.85

  Alignments for each domain:
  == domain 1  score: 125.7 bits;  conditional E-value: 1.1e-40
  AA_permease_2  94 silsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.........stetd 180
                      ++v+++y+++a+g  lq++twl++ +a + ++  ++++++ ++ +  + n+lg++k+ ++l++++  gl++   +  +s          +t++ 
     KKY15733.1  12 PNCIVMGEYIIYAVG--LQPSTWLIRTLATITITSACVMHAKFPRLGVHVINVLGVAKM-IILAFVVSSGLAASVLSFPNSTkqtggagglTTAQ- 103
                    3699**********9..99****************************************.8******9999997555444435567766643333. PP

  AA_permease_2 181 tffpngwpgv.......llgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeav 267
                      f+++w g+         +ll +l++f G+++a+ v++ v++   ++++a++++l++v+++y+l nia++ +v ++e+ + + +  +a+ f+ ++
     KKY15733.1 104 RNFSDIWAGSssspyaySTALLKILYCFRGYNTANTVLSSVRRpiPTLKVAAPLALSLVAGSYILANIAYFCAVDKEEFREAGVV--LAGRFLSNL 197
                    47777777744455555779********************999888*********************************986655..599999998 PP

  AA_permease_2 268 ggk.vvaiivvilialsllgaintavigssrvlealardgvlP..rffakv...................................nkfgspirai 325
                    +g  v+++++  l+++s++g++ + +++++rv+++l+rdg lP  +f+a                                     +++ s + ++
     KKY15733.1 198 FGAtVGERVLPWLVIISAFGNVSATSFAQARVNQELGRDGLLPysDFWAGNtrlnmfssntktpstlgpdtnankivralrnnsigSQTASLSPSL 293
                    8766*********************************************99999999999***********99999999999999778999***** PP

  AA_permease_2 326 iltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrphlkr...pgkilvaiigalfllfllvalffppkgp 409
                    +l++ +s +l++l+   ++  y+fll+++ +++ i+  +++ g+l+l  +++++     p++ +++ i+++ +l ++++++++p ++
     KKY15733.1 294 FLHFFIS-ALVILLPP-PGQIYTFLLEIGGYPVSIISVAVAGGLLYLQLNPHERWNspiPARKIWVVIFFIANLGVCILPWINPGEQ 378
                    *******.55444433.499*********************9999999995555336778888888999999999999999987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3786.35
//
Query:       KKY15734.1  [L=397]
Description: putative amid-like mitochondrial oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-27   97.2   0.0    1.3e-27   96.8   0.0    1.1  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    2.7e-12   47.1   0.0    9.1e-10   39.0   0.0    2.4  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    1.4e-05   24.5   0.1    0.00015   21.1   0.0    2.2  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    0.00023   20.9   3.3       0.03   13.9   3.3    3.7  1  DAO             FAD dependent oxidoreductase
     0.0011   18.0   0.2          3    6.6   0.0    3.0  3  Trp_halogenase  Tryptophan halogenase
     0.0011   19.0   0.7        5.2    7.1   0.0    3.5  4  NAD_binding_9   FAD-NAD(P)-binding
      0.007   15.6   0.0       0.94    8.7   0.0    2.3  2  Thi4            Thi4 family
     0.0078   15.4   0.0        0.2   10.8   0.0    2.5  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
  ------ inclusion threshold ------
       0.04   13.2   2.2        1.7    7.8   0.0    2.7  3  FAD_binding_3   FAD binding domain
      0.047   13.9   0.0       0.64   10.3   0.0    2.4  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
      0.054   12.2   4.1        1.2    7.8   0.1    3.3  4  HI0933_like     HI0933-like protein
      0.085   12.7   1.2        0.2   11.5   1.2    1.7  1  Myosin_N        Myosin N-terminal SH3-like domain
       0.18   10.8   0.5         25    3.8   0.0    2.9  4  GIDA            Glucose inhibited division protein A
        4.7    6.4   5.6        8.3    5.6   0.0    2.8  3  FAD_oxidored    FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0     1e-30   1.3e-27       1     276 [.       8     302 ..       8     320 .. 0.79

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 1e-30
                  CSEEEE--SHHHHHHHHHHHH..........HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH..............HHHHCHHHHCCCCHCCT CS
                  xxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaq..........agakvtlvelegtclnggcllskallgvaedaeias..............evvkklnqgielllgee 74 
                  +d++++Gg +AGl+aa++l +            +k+t++             sk +++++++++                   +k+++ +++l+lg  
   KKY15734.1   8 YDILIVGGSFAGLTAAHHLLKnviptlelaqRDYKITML----------TNSSKFFHKISAPRSLTNpdmlkldktlldiaPGFKQYGDSFQLVLG-Y 94 
                  699******************555555544445555555..........2233344444444433335555566688899966889**********.9 PP

                  CEEEEESCEEEEETEEECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T.SEEEEES-SHHHHHHHHH.HHHH.T-E.E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxx.xxx.x RF
  Pyr_redox_2  75 vvkidpgkkkvklekkkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp.krivvvGgGyiGvElAaa.lakl.gke.v 168
                  + ++d  +++v +  ++++   +++yd+l++AtG+s    ++ Gv e++ kl    +  +++++ ll  k i++ GgG+ GvE+A++ ++++ +++ +
   KKY15734.1  95 AKSVDSFAGTVAYDGTEGNASGTLKYDSLIIATGASFDE-PLWGVSEGYDKL---QAAYKEMHSGLLSaKTILIAGGGPAGVETAGEiANRFpKSKdI 188
                  99***9999*******999999************76555.599998888766...3444455555555677****************5566664445* PP

                  EEEESSSSSS.TTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE.EEEEEETTSCEEEESEEEE-S-EEES-HHCS.HCCT-EEEETTEEE--TT CS
                  xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 169 tlveardrll.raldkelsaaleealekeGvevklgtsvkeidgnge.klevvledgeeidadlvvvavGvrpstelle.eklglelderggivvdef 263
                  t +   +rll + +++++++ ++++lek+Gv+v++  ++k   +n++   +v+l++g++  +d  + ++G +++++ ++   l  e  ++ +i++ ++
   KKY15734.1 189 TFLSGSTRLLpKLHNSRAANSAQKKLEKMGVKVVHSVRAKSWSKNSDgTTTVQLDNGKTKTVDIFIPSTGNKINSSWVPsSWLTSE-PKHAAIKTEPH 285
                  **********99999********************************5555*************************9974444444.58888999888 PP

                  S...BES.STTEEE-GG CS
                  x...xxx.xxxxxxxxx RF
  Pyr_redox_2 264 l...rtn.vpgiyaiGD 276
                       +  v+++y+ G 
   KKY15734.1 286 TlrlDVPgVENVYVFGS 302
                  76444444888888885 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.018        23       2      34 ..      10      52 ..       9      58 .. 0.73
   2 !   39.0   0.0   7.1e-13   9.1e-10       2      79 ..     162     243 ..     161     246 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.018
                EEEECSSHHHHHHHHHH..........HHTTSEEEEEESSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgal..........aelgkkVtvversdkl 34
                +++vGg++ gl +A  l          a+   k+t++ +s+k+
  KKY15734.1 10 ILIVGGSFAGLTAAHHLlknviptlelAQRDYKITMLTNSSKF 52
                89************99976666665555555667776666665 PP

  == domain 2  score: 39.0 bits;  conditional E-value: 7.1e-13
                 EEEECSSHHHHHHHHHHHHTT...SEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelg...kkVtvversdkll.rllDeeaskilqeklekngievllntkveeiegsedgvesvklk 79 
                 +++ GgG  g+E Ag++a+     k++t +  s +ll +l +  a++  q+klek+g++v+++ +++++ +++dg ++v+l 
  KKY15734.1 162 ILIAGGGPAGVETAGEIANRFpksKDITFLSGSTRLLpKLHNSRAANSAQKKLEKMGVKVVHSVRAKSWSKNSDGTTTVQLD 243
                 89***************88544669************9999**********************************8889985 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.24   3.1e+02       1      21 [.      11      31 ..      11      67 .. 0.76
   2 !   21.1   0.0   1.2e-07   0.00015     121     298 ..     116     291 ..      87     301 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.24
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagl 21
                 +I+G+  aGl+aa++l k+ +
   KKY15734.1 11 LIVGGSFAGLTAAHHLLKNVI 31
                 588888888888888877655 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 1.2e-07
  Pyr_redox_3 121 etyeAkkviiAtG.efdkPnklnipGeeklvkhyskvkefhkyagqkvvViGgknSavDaAlelvrk...gaeVtvvtrgseiekeesdpsyslkpdi 214
                  +t++ +++iiAtG  fd P +   +G +kl+  y+++++   ++ + +++ Gg+  +v++A e++++    +++t +  ++ +  +    + +     
   KKY15734.1 116 GTLKYDSLIIATGaSFDEPLWGVSEGYDKLQAAYKEMHSG-LLSAKTILIAGGGPAGVETAGEIANRfpkSKDITFLSGSTRLLPKL--HNSRAANSA 210
                  6788899******55******999****888888887777.89*********************98766699999999988665542..222233444 PP

  Pyr_redox_3 215 enrleelvkeekikvlfnaevkeik.ekeeeykvktedgkkvevkddvvlatGykpdlsflkkslfelded.grpvlteeteetnv 298
                  +++le++   + +kv+   ++k+ + +++ + +v+ ++gk+ ++ d ++  tG k + s + +s+++ + +   ++ +++t    v
   KKY15734.1 211 QKKLEKM---G-VKVVHSVRAKSWSkNSDGTTTVQLDNGKT-KTVDIFIPSTGNKINSSWVPSSWLTSEPKhAAIKTEPHTLRLDV 291
                  4444443...4.77777777777661445677899999866.666999999**999999988766655433034444455555555 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   3.3   2.4e-05      0.03       1     205 [.       9     262 ..       9     385 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.4e-05
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSS...STHHSTH...................HHHHHHHHHHHHHHHHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsgl...rylpeas...................elarlslealeelreleeel 75 
                 d++i+GG  +Gl++A++L +    ++ l ++ +       ++s+++h  +   r+l +                     + ++l+l   +  + ++++ 
  KKY15734.1   9 DILIVGGSFAGLTAAHHLLKNVipTLELAQR-DYKITMLTNSSKFFHK-IsapRSLTNPDmlkldktlldiapgfkqygDSFQLVLGYAKSVDSFAGTV 105
                 8*****************6652444444444.4443444444444444.31222233331444444555555555555522344443334444444444 PP

                 SST.TSEEEEEEEEEESS.................HHHHHHHHHHHHHH...............HHTTTTEEEEEHHHHHHHSTTST..TTS.EE.EEE CS
         DAO  76 gid.idyrrtGllslaad.................eeelealdkllall...............leagldaelldaeevrelepalp..gll.ga.lfy 137
                 + d ++   +G+l +  d                 +e  ++l++ +++                ++ag    + +a e++ ++p ++   +l g+  + 
  KKY15734.1 106 AYDgTEGNASGTLKY--DsliiatgasfdeplwgvSEGYDKLQAAYKEMhsgllsaktiliaggGPAG----VETAGEIANRFPKSKdiTFLsGStRLL 198
                 443333444444444..134555555566666666455666665555555557777777543333333....33666799***9744576663443446 PP

                 TTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHH CS
         DAO 138 pdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGawsd 205
                 p    ++  +++++ ++++e+ Gv+++   ++++ ++++++ ++v+   +g ++++d  + ++G   +
  KKY15734.1 199 PK---LHNSRAANSAQKKLEKMGVKVVHSVRAKSWSKNSDGTTTVQ-LDNGKTKTVDIFIPSTGNKIN 262
                 66...9****************************867666779994.444766567889999997665 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.017        22       1      22 [.       9      30 ..       9      45 .. 0.88
   2 !    6.6   0.0    0.0024         3       2      31 ..     162     191 ..     161     196 .. 0.90
   3 ?    4.1   0.0     0.013        17     161     210 ..     211     260 ..     200     264 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.017
                    EEEEE--SHHHHHHHHHHHHHT CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakal 22
                    +i+ivGG  aG +aA +l k +
      KKY15734.1  9 DILIVGGSFAGLTAAHHLLKNV 30
                    69**************997765 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0024
                     EEEE--SHHHHHHHHHHHHHTTTSSEEEEE CS
  Trp_halogenase   2 ivivGGGtaGwlaAaalakalkgklevtlv 31 
                     i+i+GGG+aG  +A  +a+ + ++ ++t +
      KKY15734.1 162 ILIAGGGPAGVETAGEIANRFPKSKDITFL 191
                     99*******************999999976 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.013
                     HHHHHHCT-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SGGG CS
  Trp_halogenase 161 rrvaearGvtrvegkvvevqldedgrveslrledgreveadlfiDcsGfr 210
                     ++  e+ Gv++v+   ++   ++++  + ++l++g++  +d+fi  +G++
      KKY15734.1 211 QKKLEKMGVKVVHSVRAKSWSKNSDGTTTVQLDNGKTKTVDIFIPSTGNK 260
                     5566788******99999999999999********************986 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0076       9.8       2      30 ..      12      45 ..      11      67 .. 0.80
   2 ?   -2.1   0.0       2.6   3.4e+03     140     155 ..     114     129 ..      96     130 .. 0.80
   3 ?    1.9   0.1      0.15   1.9e+02       2      20 ..     164     182 ..     163     195 .. 0.80
   4 !    7.1   0.0     0.004       5.2     103     155 ..     206     259 ..     192     260 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0076
  NAD_binding_9  2 ivGaGprGlavlerLlara.....kkkspleitl 30
                   ivG+ ++Gl+++ +Ll++        +++ +it+
     KKY15734.1 12 IVGGSFAGLTAAHHLLKNViptleLAQRDYKITM 45
                   9*****************9766655556666666 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.6
  NAD_binding_9 140 dgaslaadaVvLAlGh 155
                       +l++d++++A+G 
     KKY15734.1 114 ASGTLKYDSLIIATGA 129
                    446799********95 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.15
  NAD_binding_9   2 ivGaGprGlavlerLlara 20 
                    i G+Gp+G+ ++ ++++r 
     KKY15734.1 164 IAGGGPAGVETAGEIANRF 182
                    89**********9999885 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.004
  NAD_binding_9 103 lfeellarlpegvtvevhra.evvdleeradgq.avlladgaslaadaVvLAlGh 155
                    ++++++++l+ ++ v+v+++ ++ + +++ dg  +v l++g++ ++d  +  +G+
     KKY15734.1 206 AANSAQKKLE-KMGVKVVHSvRAKSWSKNSDGTtTVQLDNGKTKTVDIFIPSTGN 259
                    5677888885.5677776555***********768999*********99988886 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00074      0.94      18      43 ..       8      35 ..       6      45 .. 0.85
   2 ?    4.5   0.0     0.014        18      18      42 ..     160     185 ..     145     192 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00074
                EEEEEE--SHHHHHHHHHHHHC..TTS- CS
        Thi4 18 sDvvivGaGssGLtaayylakk..pdlk 43
                 D++ivG+  +GLtaa+ l k+  p l+
  KKY15734.1  8 YDILIVGGSFAGLTAAHHLLKNviPTLE 35
                69*****************999667665 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.014
                 EEEEEE--SHHHHHHHHHHHHC.TTS CS
        Thi4  18 sDvvivGaGssGLtaayylakk.pdl 42 
                   ++i G+G++G+ +a  +a++ p+ 
  KKY15734.1 160 KTILIAGGGPAGVETAGEIANRfPKS 185
                 4689****************987765 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.096   1.2e+02     191     235 ..       7      59 ..       4      70 .. 0.61
   2 !   10.8   0.0   0.00016       0.2     146     238 ..     117     208 ..      83     239 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.096
  K_oxygenase 191 kkriaVvGsGqSaaeifedllrr........qkkvelklvtrsealeplddsp 235
                  k +i++vG+   +   +++ll++        q++++++++t s++++   ++p
   KKY15734.1   7 KYDILIVGGSFAGLTAAHHLLKNviptlelaQRDYKITMLTNSSKFFHKISAP 59 
                  56899***866666666666666422233334447777777777776655544 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00016
  K_oxygenase 146 elearnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkk.velklvtrsealep.lddspfvn 238
                  +l+  +l++++G +   P +  +    +++  ++ y e ++ ll++k+i++ G+G  + e + ++++r++k ++++ ++ s++l p l +s  +n
   KKY15734.1 117 TLKYDSLIIATGASFDEPLWGVSEG-YDKL--QAAYKEMHSGLLSAKTILIAGGGPAGVETAGEIANRFPKsKDITFLSGSTRLLPkLHNSRAAN 208
                  5556677777777777777766533.4554..35566666779*************************886599****99999876255666555 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0013       1.7       2      23 ..       8      29 ..       7      43 .. 0.88
   2 ?    4.1   0.3     0.018        23       3      21 ..     161     179 ..     159     181 .. 0.84
   3 ?   -1.9   0.1       1.2   1.5e+03     113     153 ..     212     250 ..     201     251 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0013
                   EEEEEE--SHHHHHHHHHHHHT CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLsea 23
                   +d+lIVG++ aGl++a+ L + 
     KKY15734.1  8 YDILIVGGSFAGLTAAHHLLKN 29
                   799*************999765 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.018
                    EEEEE--SHHHHHHHHHHH CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLs 21 
                    ++lI G+GpaG+ +a + +
     KKY15734.1 161 TILIAGGGPAGVETAGEIA 179
                    579*********9998765 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.2
                    HHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEE CS
  FAD_binding_3 113 ehaeerglqvrfktevesleqdeegvtaevrdketgeeetv 153
                    +++e+ g++v ++ + +s  ++ +g t++ +d+  g+++tv
     KKY15734.1 212 KKLEKMGVKVVHSVRAKSWSKNSDGTTTVQLDN--GKTKTV 250
                    567889999999999999999999977766655..566665 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0005      0.64       1      18 [.      12      29 ..      12      53 .. 0.75
   2 ?    0.6   0.0      0.51   6.6e+02       1      22 [.     164     188 ..     164     197 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0005
                   EE--SHHHHHHHHHHHCC CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka 18
                   IvG+ ++Gl+aA++L k+
     KKY15734.1 12 IVGGSFAGLTAAHHLLKN 29
                   9************99763 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.51
                    EE--SHHHHHHHHHHHCC...TEEE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLaka...gfdv 22 
                    I G+G +G  +A ++a++    +d+
     KKY15734.1 164 IAGGGPAGVETAGEIANRfpkSKDI 188
                    67*******9998888765444455 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.077        99       2      21 ..       9      28 ..       8      58 .. 0.68
   2 ?   -2.9   0.0       1.6     2e+03     150     164 ..     115     129 ..     107     131 .. 0.83
   3 ?    2.5   0.4     0.037        47       2      22 ..     161     181 ..     160     204 .. 0.75
   4 ?    7.8   0.1   0.00092       1.2     112     164 ..     207     259 ..     182     266 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.077
                 SEEEE--SHHHHHHHHHHHH CS
  HI0933_like  2 dviviGgGaAGlmaAisaak 21
                 d++++Gg  AGl aA ++ k
   KKY15734.1  9 DILIVGGSFAGLTAAHHLLK 28
                 899************98733 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.6
                  TEEEEESEEEE---- CS
  HI0933_like 150 eeeleadklvlAtGG 164
                  +++l+ d+l++AtG 
   KKY15734.1 115 SGTLKYDSLIIATGA 129
                  678999******996 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.037
                  SEEEE--SHHHHHHHHHHHHT CS
  HI0933_like   2 dviviGgGaAGlmaAisaakr 22 
                  ++++ GgG+AG+ +A ++a+r
   KKY15734.1 161 TILIAGGGPAGVETAGEIANR 181
                  57899*******999988764 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.00092
                  HHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE---- CS
  HI0933_like 112 vdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGG 164
                   +  +k+l++ gvk+  + + ks++k++dg+ +v+++++++ + d  + +tG 
   KKY15734.1 207 ANSAQKKLEKMGVKVVHSVRAKSWSKNSDGTTTVQLDNGKTKTVDIFIPSTGN 259
                  5566899*****************************88888777777777775 PP

>> Myosin_N  Myosin N-terminal SH3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.2   0.00015       0.2      22      39 ..     234     251 ..     231     252 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
                 ESSEEEEEETTSEEEEEE CS
    Myosin_N  22 eGdkvtVetedGktvtVk 39 
                 ++++ tV++++Gkt+tV+
  KKY15734.1 234 SDGTTTVQLDNGKTKTVD 251
                 6799*************6 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.019        25       1      32 [.       9      40 ..       9      56 .. 0.81
   2 ?   -3.3   0.0       2.9   3.7e+03     135     150 ..     114     129 ..      95     134 .. 0.73
   3 ?    3.8   0.2      0.02        26       2      20 ..     162     180 ..     161     184 .. 0.89
   4 ?   -2.1   0.0       1.2   1.5e+03     255     295 ..     207     247 ..     192     260 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.019
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES-G CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLithkl 32
                d+ ++Gg  AG+ AA ++ +  +++l ++++ 
  KKY15734.1  9 DILIVGGSFAGLTAAHHLLKNVIPTLELAQRD 40
                789**************999999987665554 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.9
                 TS-EEEECEEEE--TT CS
        GIDA 135 dgetikakavviatGt 150
                    t+k ++ +iatG+
  KKY15734.1 114 ASGTLKYDSLIIATGA 129
                 4456777789999997 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.02
                 EEEE-SSHHHHHHHHHHHH CS
        GIDA   2 viViGgGhAGceAAlaaar 20 
                 + + GgG AG+e A ++a+
  KKY15734.1 162 ILIAGGGPAGVETAGEIAN 180
                 6789**********99987 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 1.2
                 T.T----B--S-CCC-SSTCCCCCCSTT-S--EEEEEESST CS
        GIDA 255 aklfegcieelgprycpsiedkivrladkeshqvfLepegl 295
                 a+  + ++e++g ++  s++ k  + + +  ++v+L++   
  KKY15734.1 207 ANSAQKKLEKMGVKVVHSVRAKSWSKNSDGTTTVQLDNGKT 247
                 34445568999999999999998888888888888887444 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0065       8.3       1      16 [.       9      24 ..       9      30 .. 0.91
   2 ?   -0.2   1.6      0.39     5e+02       2      15 ..     162     175 ..     161     181 .. 0.85
   3 ?    1.2   0.1      0.15   1.9e+02      85     144 ..     202     258 ..     175     259 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0065
  FAD_oxidored  1 DvvVvGGgpaGvaAAi 16
                  D+++vGG  aG++AA 
    KKY15734.1  9 DILIVGGSFAGLTAAH 24
                  9*************96 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.39
  FAD_oxidored   2 vvVvGGgpaGvaAA 15 
                   +++ GGgpaGv  A
    KKY15734.1 162 ILIAGGGPAGVETA 175
                   79*********877 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.15
  FAD_oxidored  85 epevakavleemlaeagvtvllntrlvevekegkriesvtveskegrktirAkvfiDATg 144
                   + + a++ +++ l++ gv+v++  r+++  k+ +  + v++ +   +kt + ++fi +Tg
    KKY15734.1 202 HNSRAANSAQKKLEKMGVKVVHSVRAKSWSKNSDGTTTVQLDN---GKTKTVDIFIPSTG 258
                   4566778888999999***************9779999*9965...55555567766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2839.62
//
Query:       KKY15735.1  [L=161]
Description: putative 60s ribosomal protein l24 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-28   98.8   0.2    1.4e-28   98.8   0.2    1.7  2  Ribosomal_L24e  Ribosomal protein L24e


Domain annotation for each model (and alignments):
>> Ribosomal_L24e  Ribosomal protein L24e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.2   8.1e-33   1.4e-28       1      66 []       1      66 [.       1      66 [. 0.98
   2 ?   -2.5   0.2      0.34   6.1e+03      40      48 ..     119     127 ..     105     133 .. 0.61

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 8.1e-33
                    XXX-B-TTT-SB--SS--EEEE-TTS-EEEESSHHHHHHHHTT--GGGSTTSTTT-XXXXXXXX.. CS
  Ribosomal_L24e  1 mktekCsFsgykiyPGhGkrfvrnDgkvfrFlssKceklfkqkrnPrklkWTkayRrahkkeltee 66
                    m+t +  Fsg+kiyPG+Gk++vr D+k+frF + K+e+lf+q++nPr+++WT++yRr+hkk+++ee
      KKY15735.1  1 MRTFDDTFSGQKIYPGKGKLYVRGDSKIFRFQNGKSESLFLQRKNPRRIAWTVLYRRMHKKGISEE 66
                    89999*********************************************************9985 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.34
                     HHTT--GGG CS
  Ribosomal_L24e  40 fkqkrnPrk 48 
                      + k+++ k
      KKY15735.1 119 LESKKKAEK 127
                     344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1671  (0.093201); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.50
# Mc/sec: 971.48
//
Query:       KKY15736.1  [L=736]
Description: hypothetical protein UCRPC4_g06172 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       806  (0.0449551); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.49
# Mc/sec: 4502.93
//
Query:       KKY15737.1  [L=149]
Description: putative ubiquitin conjugating enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-47  160.7   0.0    1.8e-47  160.5   0.0    1.0  1  UQ_con     Ubiquitin-conjugating enzyme
    0.00091   18.9   0.0     0.0012   18.5   0.0    1.3  1  Prok-E2_B  Prokaryotic E2 family B
  ------ inclusion threshold ------
      0.017   15.0   0.1      0.031   14.1   0.1    1.5  1  UEV        UEV domain
      0.075   13.3   0.0      0.096   13.0   0.0    1.3  1  RWD        RWD domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.5   0.0     4e-51   1.8e-47       1     138 [.       6     141 ..       6     143 .. 0.96

  Alignments for each domain:
  == domain 1  score: 160.5 bits;  conditional E-value: 4e-51
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT--TTSHHHH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeekWspaltles 99 
                 r+ ke ++l+ ++ +gisa + +d nl  ++v i+gp+++pYegg+Fklel +p+dYP++pPk++f tki+HPn+dk G++cld+Lk++ Wspal++++
  KKY15737.1   6 RIVKETERLMAEPVPGISAVPHED-NLRYFDVSIHGPSQSPYEGGIFKLELFLPDDYPMTPPKIRFLTKIYHPNIDKLGRICLDVLKSN-WSPALQIRT 102
                 7899*******************8.**************************************************************55.********* PP

                 HHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHH CS
      UQ_con 100 vllsiqsLlaepnpesplnkeaakllkkdreeykkkvke 138
                 +llsiq+Ll  pnp++pl +++a+ +k+d+ +  ++++e
  KKY15737.1 103 ILLSIQALLGAPNPDDPLANDVAQRWKEDEPAAIQTARE 141
                 *****************************8887777766 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.7e-07    0.0012      34     113 ..      47     120 ..      22     139 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.7e-07
   Prok-E2_B  34 sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfg.gaLClleeeldldewdpngsvadvleqlqqvLn.egisgde 113
                 +gg+++l+l +pd++p  pp+++          +H n ++ g +Cl        +w p+  ++ +l ++q++L   ++ +  
  KKY15737.1  47 EGGIFKLELFLPDDYPMTPPKIRFLTKI-----YHPNIDKlGRICL---DVLKSNWSPALQIRTILLSIQALLGaPNPDDPL 120
                 8*********************875443.....6888755799999...777888999999999999999888766665555 PP

>> UEV  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   6.9e-06     0.031      35     118 ..      38     117 ..      24     120 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.9e-06
                 EEEEEE-SSSTTS-EEEEEEE--TTTTTS--EEEE-GCC--TSGGGGGB-TTSBB--HHHH.S--T..TT--HHHHHHHHHH----- CS
         UEV  35 lkGtipvkykgatyniPiliwvlesyPveaPivyvkptksmvikknenvdaqGlvylpyLe.eWkr..eksnlvslvqelaqafeee 118
                 ++G  +  y+g +++  ++++++++yP+++P +    +       + n+d+ G++ l++L+ +W++  +  +++  +q l  a + +
  KKY15737.1  38 IHGPSQSPYEGGIFK--LELFLPDDYPMTPPKIRFLTKI-----YHPNIDKLGRICLDVLKsNWSPalQIRTILLSIQALLGAPNPD 117
                 555555566655544..6899**********87554332.....3459************736888544444666666666565555 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.1e-05     0.096      53      78 ..      49      74 ..      10     111 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.1e-05
                EEEEEEEEE-SSTTSS--EEEEEECC CS
                xxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD 53 pslkleiklpeeYPeeaPiislsste 78
                  +kle  lp +YP ++P+i++ ++ 
  KKY15737.1 49 GIFKLELFLPDDYPMTPPKIRFLTKI 74
                5689****************998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.31s 00:00:00.78 Elapsed: 00:00:00.48
# Mc/sec: 927.19
//
Query:       KKY15738.1  [L=1322]
Description: putative wd repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-10   40.4  16.0    4.8e-10   38.9  16.0    1.9  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
    0.00021   21.6   0.0    0.00059   20.1   0.0    1.7  1  RWD           RWD domain
    0.00025   21.8   0.1     0.0031   18.3   0.0    2.9  2  WD40          WD domain, G-beta repeat
     0.0045   17.3  10.3      0.015   15.6  10.3    1.9  1  zf-RING_2     Ring finger domain
  ------ inclusion threshold ------
       0.16   11.8  10.2       0.49   10.3  10.2    1.9  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9  16.0   1.3e-13   4.8e-10       6      57 ..    1162    1219 ..    1157    1220 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 1.3e-13
  Zn_ribbon_17    6 sCayCelavkgrvvlcgvCeHvlHasCarewfendd......laeCpsGCGckcleks 57  
                     C +Ce a+ g++v c +C+Hv  + Ca+ewf   d      +++Cp+GCGc c +++
    KKY15738.1 1162 FCIICEEAISGNMVPCLNCGHVSCFPCAEEWFCGADsgdneeQPVCPTGCGCTCSQHE 1219
                    6******************************9433334456699**********9986 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.7e-07   0.00059      49      99 ..     303     354 ..     242     369 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.7e-07
                 TT-CEEEEEEEEE-SSTT.SS--EEEEEECCSS-HHHHHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD  49 ekkkpslkleiklpeeYP.eeaPiislsstenlpkeqvksleekleelaeen 99 
                 e  ++ lk++ik+p++YP + aP +s++ t ++++e  k+l+++++ +ae  
  KKY15738.1 303 ENIPVFLKIDIKFPKDYPrTAAPTFSIQKTASVTDELSKQLSSEIKLIAEAY 354
                 4567889***********999************************9999876 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   8.6e-07    0.0031       3      38 .]       5      42 ..       3      42 .. 0.85
   2 ?   -0.9   0.0         1   3.6e+03       3      19 ..     102     119 ..     100     146 .. 0.60

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 8.6e-07
                EEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40  3 clrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38
                ++r++++H + ++++++++++   ++++s D+t+++W+
  KKY15738.1  5 PVRSIEAHsTKIYGIDWNRYQENkVITCSLDKTIKFWN 42
                78999***555****777777778789**********8 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1
                 EEEEEESS.SSEEEEEEE CS
        WD40   3 clrtltGH.ssvtslafs 19 
                 ++ t+ GH + v  + + 
  KKY15738.1 102 PVATFPGHrGQVKEFLWR 119
                 789999997778666444 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6  10.3   4.1e-06     0.015       3      42 ..    1163    1209 ..    1161    1212 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.1e-06
   zf-RING_2    3 CpICleelssadsvlllpCgHvfhreClerwlrssst........CPl 42  
                  C IC e++ s++ v++l CgHv ++ C+e+w+    +        CP+
  KKY15738.1 1163 CIICEEAI-SGNMVPCLNCGHVSCFPCAEEWFCGADSgdneeqpvCPT 1209
                  ****7777.689999999*************54444445556666886 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  10.2   0.00014      0.49       1      39 [.    1163    1208 ..    1163    1211 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00014
                  -TTT-S--SS-E..E-TTS--B-CHHHHHHHHC......TSSB--T CS
    zf-C3HC4    1 CpiCleeakepn.elleCkHsfCskCirkilks......rkkvkCP 39  
                  C+iC e ++ ++   l+C+H  C++C +++         +++  CP
  KKY15738.1 1163 CIICEEAISGNMvPCLNCGHVSCFPCAEEWFCGadsgdnEEQPVCP 1208
                  *********999889***************9888888644444488 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       868  (0.0484132); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.96u 0.33s 00:00:01.29 Elapsed: 00:00:00.53
# Mc/sec: 7460.73
//
Query:       KKY15739.1  [L=870]
Description: hypothetical protein UCRPC4_g06175 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.15   10.2   4.1        0.2    9.8   4.1    1.1  1  Nop14        Nop14-like family
       0.96    8.7   4.3        1.6    8.0   4.3    1.3  1  BUD22        BUD22
        5.2    5.0  15.3        7.1    4.6  15.3    1.1  1  DNA_pol_phi  DNA polymerase phi


Domain annotation for each model (and alignments):
>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   4.1   3.4e-05       0.2     357     398 ..     132     166 ..     100     270 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 3.4e-05
       Nop14 357 edddlveseseeeeeeeeedeeeeedeeeeeeeeededdlsd 398
                  dd  v++e++ +eee+++d++e++dee+++       d+ d
  KKY15739.1 132 FDDPPVAEEKDYDEEEDDDDDDENDDEEDDD-------DDPD 166
                 3333344444444433333333333333322.......2222 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.3   0.00027       1.6     174     232 ..     140     230 ..     124     311 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00027
       BUD22 174 esedsedeekeeseddeeeeeededdedaee............deedeeaeerelaqydg.lla...........sddeded............e 232
                 e++ +e    ee++dd++e++++edd+d+++              ++e+ e+ ++ ++d  ll+           s  +d+              
  KKY15739.1 140 EKDYDE----EEDDDDDDENDDEEDDDDDPDdgvlrnevcfncGLQEENHESMSILAFDFaLLNlgedaplpvkpSTTSDSAvkpspltinnkpA 230
                 222222....2333344444444444444445678888999885556677777777787744445555555555533333335566666443331 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  15.3    0.0012       7.1     655     693 ..     138     174 ..      94     190 .. 0.55

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0012
  DNA_pol_phi 655 ddeededseedddeeesdedeededdedvdeidelrekl 693
                  ++e+d d+eeddd++++ +deed+dd+ +d    lr+++
   KKY15739.1 138 AEEKDYDEEEDDDDDDENDDEEDDDDDPDDG--VLRNEV 174
                  2333333333333333333333333333333..666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (870 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 5797.58
//
Query:       KKY15740.1  [L=316]
Description: putative rna polymerase ii transcription mediator complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-30  104.4   0.0    1.2e-29  102.8   0.0    1.7  2  Med6      MED6 mediator sub complex component


Domain annotation for each model (and alignments):
>> Med6  MED6 mediator sub complex component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.0   6.5e-34   1.2e-29      25     132 ..       2     137 ..       1     138 [. 0.90
   2 ?   -1.4   0.0      0.11   1.9e+03      53      78 ..     207     234 ..     174     248 .. 0.63

  Alignments for each domain:
  == domain 1  score: 102.8 bits;  conditional E-value: 6.5e-34
        Med6  25 espFydktsnNevlkmqrqfnqaaeeal.........LkkmkGleyvlahvqep.................dlfvirkqerksat....evtvlaaYyi 93 
                 espF+dktsnN++l +q+qfnq+ +++l         L++m Gle+v+a   +p                 +++vi+kq+r++++    evt+la Yy+
  KKY15740.1   2 ESPFFDKTSNNQSLLTQAQFNQDVAQSLatrdafearLRSMGGLEFVVA--YDPlkmsvqiptpdggsdwsNVWVIKKQNRSKRQgfsdEVTILAYYYM 98 
                 8**********************99997888999999************..33444555555889999999*************66666********** PP

        Med6  94 iggniYqapslysvvqsrllsalsslskalkelsslakf 132
                 +++ i++aps+++vv +r+ls+++sl+k+++++  l+ f
  KKY15740.1  99 VNDAIFMAPSIARVVGNRMLSTITSLDKMISAAAPLPLF 137
                 *******************************99877665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.11
        Med6  53 LkkmkGleyvla..hvqepdlfvirkqe 78 
                 L+   G ey+     + ep+ f+i+k +
  KKY15740.1 207 LSLRYGKEYMDDtpLTGEPGSFIISKSK 234
                 5555666666544456788999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       961  (0.0536003); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2236.02
//
Query:       KKY15741.1  [L=657]
Description: putative para-aminobenzoate synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-65  220.4   0.0    5.8e-65  219.4   0.0    1.5  1  Chorismate_bind  chorismate binding enzyme
      2e-12   47.5   0.0    6.2e-12   45.9   0.0    1.7  2  Anth_synt_I_N    Anthranilate synthase component I, N termina
      1e-06   28.7   0.0    1.6e-06   28.0   0.0    1.3  1  GATase           Glutamine amidotransferase class-I


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.4   0.0   9.6e-69   5.8e-65       3     258 .]     364     645 ..     362     645 .. 0.90

  Alignments for each domain:
  == domain 1  score: 219.4 bits;  conditional E-value: 9.6e-69
                      CHHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-H........HHHHHHHHCTBSSSEEEEEEETTEEEEEEESSEEEEEETTSEEEEECE CS
  Chorismate_bind   3 edYaeavekvkeeiragdlykvvlsrrlkaeleaavdp........lalyralrarnpapysflleledsellgaSPElllkveggrrietepi 88 
                      e+Y+++++++++++r+gd+y+++l+ ++++ l+++ ++        laly +lr+ np p++ +l+l+d+++ +aSPE ++++++g++i + p+
       KKY15741.1 364 EQYKDSIRQCQQYLRSGDSYELCLTAETQIALPKSGKSiisksshaLALYLRLRKLNPVPFASYLDLGDTRIASASPEQFMTWSRGGQIDMVPM 457
                      79*****************************999888444555555**************************************99******** PP

                      EEEEEHSSSHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSC.CEEEEECCEEEEEETTEEEEEEEEEEEESTT--H............ CS
  Chorismate_bind  89 aGTrargktpeedealeeelledeKeraEhlmivdlirndLgkvakp.gsvkvpelfkverysevlhlvstiegelkedvsl............ 169
                      +GT ++++      +++ ++l+++Ke+aE+lmi dlir+dL ++    ++v+v +l+ v ++++v++lvs+i+  ++++++             
       KKY15741.1 458 KGTVKKSA--GMTFERASQILASPKEQAENLMIADLIRHDLYSLFDGeNKVDVVKLCDVIEHETVYQLVSHIRTAIPDQLTGngrhrqtdilkh 549
                      ****6655..55788899*************************9654478***********************999988544456666444444 PP

                      .HHHHHHCSS-CCCSEESHHHHHHHHHHHSSS--TTTTSEEEEEETTS-EEEEEE-SEEEEET......TEEEEEEEEEEETT--HHHHHHHHH CS
  Chorismate_bind 170 .ldllkalfPtgavtGaPkkrameiidelEearRgvYaGavgyldadgeaelavvIRtavvkd......kelrlgaGaGIvadSdpeaEyeEtl 256
                        ++l +++P+g++tGaPkkr++ei+ +lE++rRgvY+Ga+gy+d  g + ++v IRta+ ++      +++r+gaG++I++ Sd +aE+eE++
       KKY15741.1 550 gQRALISTLPPGSMTGAPKKRSCEILSKLENRRRGVYSGAIGYIDLGGAGAFSVCIRTAFSHSgpeeemEKWRIGAGGAITVLSDEHAEWEEMK 643
                      45677789*****************************************************7779999988**********************9 PP

                      HH CS
  Chorismate_bind 257 aK 258
                      +K
       KKY15741.1 644 TK 645
                      98 PP

>> Anth_synt_I_N  Anthranilate synthase component I, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0     1e-15   6.2e-12      12     139 ..     166     300 ..     157     302 .. 0.72
   2 ?   -3.3   0.0       1.6   9.8e+03      90      98 ..     585     593 ..     573     593 .. 0.80

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 1e-15
  Anth_synt_I_N  12 laeeehkflLeSaeneggegrySfigldpflelk......skngeveveg.....pegeeleeeepldalrellerfrsaedseptelpfvgGlvG 96 
                    ++  + k  LeS +    +gryS+ +l+   +++      s++  +e+++     ++ +  +e ++++++ ++ ++++ +  s+ +e pf gG++G
     KKY15741.1 166 VSYPGMKAVLESTR----KGRYSIFALPSPTSWRldywsdSQTLGIETSTkgsvpQKVKLCKEADVFQYISAM-TCAKMV-GSSTEESPFWGGFIG 255
                    55545678899996....9**********88877778755555555555577875555555555699999876.455534.7888999******** PP

  Anth_synt_I_N  97 ylgYDlvreieklpks..akddln.lp.darlilydtlivfDhkerr 139
                    +l+Y++   +ek++++  a+++ + +p d++++++++++++Dh+e++
     KKY15741.1 256 FLSYEM--GLEKFGDAvvAPREVKgMPaDLSFLWVERCVIIDHHEQK 300
                    ******..444444332355555556669****************98 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.6
  Anth_synt_I_N  90 fvgGlvGyl 98 
                    +++G++Gy+
     KKY15741.1 585 VYSGAIGYI 593
                    689****97 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   2.7e-10   1.6e-06       2      75 ..      11     102 ..      10     103 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2.7e-10
                 EEESSTSTHHHHHHHHHH.TT-EEEEEETTSHHHHH.............HHTHHSTSEEEEEEESSCTTTTTHHHHHHHHCT....STS-EE CS
      GATase   2 liDnydsvtenlvhalve.lgvkvevvpidasaeei.............lellknpdgilvsgGpgspgvegkieaikeare....nkiPiL 75 
                 +iD+yds++en+v  l+e l+v+v+ ++id+   e               e l+n+d+++v +Gpg+p+  + i +i+++ +    + +P+L
  KKY15741.1  11 FIDAYDSFSENIVAMLREtLNVDVTSLKIDSVVPEDldpsgnqtqyarfAEYLQNFDAVIVGPGPGNPANPKDIGIISQIWNlpdsHLLPVL 102
                 69**************98357*********998888999**999887643369****************99999999998775554555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.48
# Mc/sec: 4095.13
//
Query:       KKY15742.1  [L=284]
Description: putative peroxisomalenoylisomerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-24   84.9   0.0    1.5e-12   47.4   0.0    2.2  2  ECH_1     Enoyl-CoA hydratase/isomerase
    1.3e-13   51.2   0.0    1.6e-13   50.9   0.0    1.1  1  ECH_2     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   7.4e-13   6.6e-09       6      61 ..      19      74 ..      15      87 .. 0.92
   2 !   47.4   0.0   1.6e-16   1.5e-12      76     215 ..     108     254 ..      96     281 .. 0.83

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 7.4e-13
                EEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEEEEB-HHH CS
       ECH_1  6 vaviklnrPeavNalsaelltEliqalekleddksvravvLtGgdkaFaaGadlke 61
                +a i+l +P ++Nal+ ++   l+  ++++ d++++ + +LtG +++F+aGad+  
  KKY15742.1 19 LAFITLSNPSKLNALDSHCYYRLACLMQDVADNPAISVTILTGTGRFFSAGADVSS 74
                688**************************************************976 PP

  == domain 2  score: 47.4 bits;  conditional E-value: 1.6e-16
                 CHHHHHHHHHHSSSEEEEEE-SEEETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEE CS
       ECH_1  76 evlelwtklytvpkpviaavnGaaigGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvv 174
                 + l+  ++ y  pk++i a+nG a+g  + l  +cD+++a  +     +++ lGl+++ g++  +++++G ++A+e+l++ +ki+ + +l  G v k +
  KKY15742.1 108 NNLDITRAFYMHPKILIGALNGPAVGLSAALLGFCDFIYATPHTFLLTPFSSLGLVAEGGASIGFVNRMGIALANEALIMSRKITMDKLLSSGFVTKEF 206
                 556777889999************************************************************************************999 PP

                 SG.GGHHHHHH.....HHHHHHHHSCHHHHHHHHHH.HHHHHHHHHHH CS
       ECH_1 175 pe.eqlleeal.....elaeklaekspaalrqlkea.lnakledalae 215
                 p+ +++l++ +     +l e+l+++s++ +++l  +  +a++e + ++
  KKY15742.1 207 PAdDKFLSNVVdevkdKLGEHLNQESILKIKALIRErERAEMEAQGVK 254
                 986888888773333457788998888888887544034445555554 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   1.8e-17   1.6e-13       2     205 ..      20     243 ..      19     279 .. 0.78

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 1.8e-17
                 EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS...............-THH..HHHHHHHHHHHHHH CS
       ECH_2   2 gvitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakeg...............kkee..eeffreeYklnyli 83 
                 ++itL +p++lNaL+ +   +l+  ++++++++++++ +l+g+g + f+AG Dv +   ++ +                ++ e  ++f++++ ++  + 
  KKY15742.1  20 AFITLSNPSKLNALDSHCYYRLACLMQDVADNPAISVTILTGTG-RFFSAGADVSSSIFSEYRPsfadpsipasdrhafRR-EvfRSFIANNLDITRAF 116
                 68****************************************88.*********987766666668989998875443322.24677888888888888 PP

                 HC-SS-EEEEE-BEEETHHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHH.HHHCSSTTHHHHHHHH---B-HHHHHHTTS--EE--GGGH.... CS
       ECH_2  84 atypkpvvalmdGivmGgGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsy.fLsrlpgelGlylalTGarlkgadalaaglathyvpsekl.... 177
                    pk ++  ++G ++G  ++l   + f  +t +t +  P  ++Gl+ + G+s  f +r+  +l+    + +++++   +l  g+ t+ +p+++     
  KKY15742.1 117 YMHPKILIGALNGPAVGLSAALLGFCDFIYATPHTFLLTPFSSLGLVAEGGASIgFVNRMGIALANEALIMSRKITMDKLLSSGFVTKEFPADDKflsn 215
                 899999**********************************************98799****************************99988876522211 PP

                 ..HHHHHHHHTT.........--------.. CS
       ECH_2 178 ..ealeeaLaelessd.eeaveevleelaee 205
                   ++++++L e  +++   +++++++e   +
  KKY15742.1 216 vvDEVKDKLGEHLNQEsILKIKALIRE---R 243
                 125555555544333222333333333...2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1945.46
//
Query:       KKY15743.1  [L=392]
Description: hypothetical protein UCRPC4_g06179 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-40  138.4   7.6    4.8e-40  137.4   7.6    1.5  1  DUF1640   Protein of unknown function (DUF1640)
  ------ inclusion threshold ------
       0.12   12.4   0.2       0.23   11.4   0.2    1.4  1  CYTL1     Cytokine-like protein 1
       0.45   10.5  11.3        2.2    8.3   0.3    2.5  2  SOAR      STIM1 Orai1-activating region


Domain annotation for each model (and alignments):
>> DUF1640  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.4   7.6   8.1e-44   4.8e-40       1     171 [.     167     338 ..     167     341 .. 0.99

  Alignments for each domain:
  == domain 1  score: 137.4 bits;  conditional E-value: 8.1e-44
     DUF1640   1 fDThalvrrLeekGftkeqAeaimsaltevlneslekvakslvskselekseylqkaalselrkevqisersefaalrseteklqreleklkqkLreei 99 
                 fDT++lvr+L ++G+t++qA + m+a++++l+ +l+ +++slvsks++e+++yl++aa+selr+ +q+s+++e+++ rs++ ++q+e + l+qk+ +++
  KKY15743.1 167 FDTYSLVRDLAKGGYTDAQAVTTMKAIRTMLAYNLDVARESLVSKSDVENETYLFRAACSELRTSLQSSRQTEMQKQRSQRAQVQHEYDILNQKMTQDM 265
                 9************************************************************************************************** PP

     DUF1640 100 dklkadirldlnleKgrireelakleakiqelnnkidrev.salrteiEsvKldvikyliglvvgilavglav 171
                  +l++d +  +n++K+  +ee  +l+akiq+ln+ i+  + s+ ++++E +++ ++++++  + + + +++++
  KKY15743.1 266 LTLREDLKALFNDRKMASQEEKRRLDAKIQQLNYEITVTLnSDSKSQVEGLRWVLTRRAALAIGAAAFMIIGF 338
                 ****************************************99**********************999999998 PP

>> CYTL1  Cytokine-like protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   3.9e-05      0.23      66     123 ..     226     283 ..     213     287 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.9e-05
       CYTL1  66 aklrdflaspkcrkvarvealkekvrklytiinkvcrrdlvfltddcealetpvsvat 123
                 + lr+ l s + +++++    + +v++ y i+n+   +d+  l +d +al +  ++a+
  KKY15743.1 226 SELRTSLQSSRQTEMQKQRSQRAQVQHEYDILNQKMTQDMLTLREDLKALFNDRKMAS 283
                 7899***999***************************************987766655 PP

>> SOAR  STIM1 Orai1-activating region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   5.6    0.0037        22       3      77 ..     224     302 ..     222     319 .. 0.81
   2 ?    8.3   0.3   0.00037       2.2      20      46 ..     343     369 ..     333     377 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0037
        SOAR   3 apeeLqqlLqlTyelElkylnkkkqeaekqlqeAke....eveklkkkrssllgslrlahssslddvdkkileakqale 77 
                 a +eL++ Lq + ++E+++ ++++++ +++ +  ++     +  l+   + l+   ++a  ++   +d+ki+++  +++
  KKY15743.1 224 ACSELRTSLQSSRQTEMQKQRSQRAQVQHEYDILNQkmtqDMLTLREDLKALFNDRKMASQEEKRRLDAKIQQLNYEIT 302
                 6789*************************9876555222256679999999********************99987765 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00037
        SOAR  20 kylnkkkqeaekqlqeAkeeveklkkk 46 
                 +++n +++eaek+ ++A+e++e+ +  
  KKY15743.1 343 SHVNREREEAEKRHRAAREAAERAQTE 369
                 78999*****************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2194  (0.122372); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 2635.85
//
Query:       KKY15744.1  [L=307]
Description: putative formate nitrite transporter family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-72  242.3  15.9    4.7e-72  242.1  15.9    1.0  1  Form_Nir_trans  Formate/nitrite transporter
     0.0047   16.6   0.7     0.0083   15.8   0.7    1.4  1  PepSY_TM        PepSY-associated TM region
     0.0084   16.2   0.4        1.3    9.2   0.0    2.6  2  DUF2107         Predicted membrane protein (DUF2107)
  ------ inclusion threshold ------
      0.028   14.1   0.1      0.042   13.5   0.1    1.2  1  Herpes_UL79     UL79 family


Domain annotation for each model (and alignments):
>> Form_Nir_trans  Formate/nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.1  15.9   1.1e-75   4.7e-72       1     236 []      11     259 ..      11     259 .. 0.96

  Alignments for each domain:
  == domain 1  score: 242.1 bits;  conditional E-value: 1.1e-75
                     HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCCT..TCHHHHHHHHHCCCHHHHHHHHHT---CCCCCCHHHHHHCTTSS CS
  Form_Nir_trans   1 eivekvvaagvkkaklsldklfllgilAGafigfgvllalvvaaalaes..npglakllgglvFpvGlilvvllgaeLfTgntllltlavlkkkv 93 
                     e++e v +agv+ka+++ldk+f++++ AG++++f+++ al +++a   +  +pgl + +++lvFp Gl+++vl+ga+L+Tg +l++t++vl++++
      KKY15744.1  11 ETIELVSRAGVHKANMRLDKIFFSSVSAGCLLSFACATALSTNTAPWYQenAPGLIRTIAALVFPYGLCMIVLTGADLCTGTFLFTTVSVLHRRL 105
                     5788999*********************************9999865557899****************************************** PP

                     SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGG.....HHHHHHHHHCCC.SS-HHHHHHHHHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHH CS
  Form_Nir_trans  94 slkkllknwlvvllgNliGsllvalllvvlsgll.....aekllsiaeakl.slsfleaflrGilCNwlVclavwlalaakdvigkilaiflpif 182
                     s++k+  +w+++++gNl Gsl+v  +l++++g++     +e+++++a++k  + +++ +flr+i++NwlVcla++l ++ ++ ++ki++i++p+f
      KKY15744.1 106 SITKAGLHWFITFWGNLTGSLFVTGILIYYGGIFkldayKEEVFKFAKTKQvTPDWHMIFLRAIGANWLVCLACYLGMSGREFASKIIGIWWPTF 200
                     *********************************7788889*****9998876999**************************************** PP

                     HHHHCT---HHHHHHHHHHHHHH.....SHHHHHHHCHHHHHHHHHHHHHCCHHHHHHH CS
  Form_Nir_trans 183 afvasgfeHsvanmfliplglll.....tvadfilknlipvtlGNivGGallvgllyly 236
                     afv +gf+H+vanm++ip++++l     +v+ +i+k +ip+++GNivGGal+vg +y+y
      KKY15744.1 201 AFVSLGFDHVVANMTFIPAAIFLgspdiSVGLYIWKGIIPSLIGNIVGGALFVGAYYWY 259
                     ***********************999999*****************************8 PP

>> PepSY_TM  PepSY-associated TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.7   1.8e-06    0.0083     103     173 ..      91     164 ..      36     185 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.8e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxx RF
    PepSY_TM 103 asafaeflrrlHrglllgkpvGrllvglaallllvllvsGlilwwprrkkk.....rfftfrpkkgrrfwldlHnv 173
                 ++++++++  lHr l + k    +++++ + l+  l v+G++++     k      ++f+f ++k  +++ d+H +
  KKY15744.1  91 GTFLFTTVSVLHRRLSITKAGLHWFITFWGNLTGSLFVTGILIYYGGIFKLdaykeEVFKFAKTK--QVTPDWHMI 164
                 279999**************9**********************9887777789987777777777..899999965 PP

>> DUF2107  Predicted membrane protein (DUF2107)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.1    0.0082        37      24      45 ..      64      85 ..      37     102 .. 0.73
   2 !    9.2   0.0   0.00029       1.3      34      60 ..     198     222 ..     173     225 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0082
     DUF2107 24 plvrllnlEvpavGvllilLay 45
                 l+r++   v   G+++i+L+ 
  KKY15744.1 64 GLIRTIAALVFPYGLCMIVLTG 85
                489*****************85 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00029
     DUF2107  34 pavGvllilLaynetlALlTfiavtai 60 
                 p++  +++ L +++++A +Tfi ++++
  KKY15744.1 198 PTF--AFVSLGFDHVVANMTFIPAAIF 222
                 544..6899*************98776 PP

>> Herpes_UL79  UL79 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   9.4e-06     0.042     113     171 ..      62     121 ..      47     133 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.4e-06
  Herpes_UL79 113 nvdllkglaalvlarlGvkravkiseenlvdGnllFnlGsvlpsRllli...vafclvfWGk 171
                   + l +++aalv+  +G++  + ++   l+ G +lF   svl  Rl ++   ++++ +fWG+
   KKY15744.1  62 APGLIRTIAALVFP-YGLC-MIVLTGADLCTGTFLFTTVSVLHRRLSITkagLHWFITFWGN 121
                  56788888888875.8999.7889999******************976422378*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1971.44
//
Query:       KKY15745.1  [L=141]
Description: hypothetical protein UCRPC4_g06181 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.095   11.6   0.9       0.12   11.3   0.9    1.0  1  PA26      PA26 p53-induced protein (sestrin)


Domain annotation for each model (and alignments):
>> PA26  PA26 p53-induced protein (sestrin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.9   6.6e-06      0.12     202     289 ..      15     107 ..       3     112 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.6e-06
        PA26 202 eeeeeelerkaaaeaeaevealmermkklqeeedeee...easeeelserfekeeseslllaaadaeeaavasdlsryvedpe..fgyqdFar 289
                 e  ++e+ ++++++ ++ v+ +m+++ +lq +e+ ++   +a++ +l++  e+e+ ++ + + +++ e++++++  +yv+ pe  +g ++Far
  KKY15745.1  15 EIARAEARKRRSEDVATIVSLVMKQILELQTQEKVTAekeAATKLNLQRAAEEESLRQHTQTLVKVGEEKPKATKLEYVTAPEpqYGTSEFAR 107
                 4455666777778888888999999988887777544221333333333445555555555556889999999999**997651155567776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1367  (0.0762452); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1068.20
//
Query:       KKY15746.1  [L=409]
Description: putative branched-chain amino acid aminotransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-23   83.0   0.0    6.3e-23   81.8   0.0    1.6  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   3.5e-27   6.3e-23       2     223 .]      85     363 ..      84     363 .. 0.83

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 3.5e-27
  Aminotran_4   2 lfEtmrvy...ngei..ffldeHleRLrksaellglelpfdeeelrkileelleannsen.........grlrllvsrgggglg.aatsepsvavyvs 84 
                  +fE+ ++y   +g++  f+  +++eR+ ks++++   + f+  el+k++++l++ ++ +          +++r+++++++  +g +   e+ ++v+++
   KKY15746.1  85 CFEGTKLYrgyDGKLrlFRPLRNCERMLKSSRRI-SLPGFQPAELEKLIKKLAAVDGPKWlpksqpghfLYIRPTMIGTDPAIGmKVPDEALLYVVMV 181
                  799999887778888878899**********999.8999****************9998889****99999*************95555555555555 PP

  Aminotran_4  85 alppgpeseke...................lplvtssdvrrdapsplpgaKtlnyldnvlarreakergadevl.lvdedgnvtEgstsNv.fivk.. 159
                   +p  ++ + +                   l + + ++ r+++  + +     ny ++++a   akerg+d+ l l+ e+++vtE++ +N+ ++++  
   KKY15746.1 182 MMPTVLNVASSkpvdpltppatpppktglkLLASNPDSIRAWPGGFGHAKVGANYGPSLQAYGAAKERGFDQILwLFGEQRFVTEAGAANFfVVWRsk 279
                  444444444444566666666767777755666666667777777777777788*****************9999****************5555599 PP

  Aminotran_4 160 ....ggelitPplssg.iLpGitrrallelakalgl.eve........ereitlkdle......eadeafltntlrgvlpvrsi 223
                        e++t+pl +g iL+G+tr+++l+la++ ++ +++        er++t+++++      +  eaf ++t+  v+pv+si
   KKY15746.1 280 nelnKIEIVTAPLLDGiILEGVTRASVLDLARQTNWsKIHgtekvdviERKFTMQEICdadeegRLIEAFCVGTAYFVVPVQSI 363
                  999888999999999989****************998888999999************6666666668*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2524.57
//
Query:       KKY15747.1  [L=177]
Description: putativedihydroxy-3-keto-5-methylthiopentene dioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-44  150.7   0.1    4.3e-44  150.5   0.1    1.1  1  ARD           ARD/ARD' family
    4.7e-10   39.0   0.0    8.9e-10   38.2   0.0    1.4  1  Cupin_2       Cupin domain
      8e-06   25.8   0.0    1.2e-05   25.3   0.0    1.3  1  AraC_binding  AraC-like ligand binding domain
     0.0063   16.1   0.0     0.0096   15.5   0.0    1.2  1  Cupin_1       Cupin
  ------ inclusion threshold ------
      0.015   15.0   0.0      0.032   13.9   0.0    1.5  1  Cupin_3       Protein of unknown function (DUF861)
       0.11   12.3   0.0       0.13   11.9   0.0    1.1  1  Cupin_6       Cupin


Domain annotation for each model (and alignments):
>> ARD  ARD/ARD' family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   0.1   1.4e-47   4.3e-44       1     157 []       2     150 ..       2     150 .. 0.85

  Alignments for each domain:
  == domain 1  score: 150.5 bits;  conditional E-value: 1.4e-47
         ARD   1 riyimddseegderlphhtspkekaeelelaklgvlrwkldaddeeeaeeeekilktkeeekkdidvevlkestpnfdeklekFfeEhlhedeeirliv 99 
                 r+y +d+ + gd+rlph++   + +  ++l+ lgvl+ + ++    +++  +k +++k++++ ++   + ++  + ++ k++ Ff+Ehlhedeeir+iv
  KKY15747.1   2 RAYWYDNLP-GDQRLPHDSG--KDVGIEQLKSLGVLYHHCPEL--SQVDGIAKDRNYKNRDQITV---SPEAMGEVYESKVKMFFNEHLHEDEEIRYIV 92 
                 578899888.7********9..667777788888776666665..45566666666666666655...344556779********************** PP

         ARD 100 eGtgyFdvrskdeawirvlvekGDLivlPagiyhrFtltednkvkalRlFvekekwva 157
                 +G+gyFdvrs+++ w+rv ++k DL++lPagiyhrFt++e+n++ka+RlF++++kw++
  KKY15747.1  93 DGEGYFDVRSEGDDWVRVKLRKDDLLILPAGIYHRFTTDEKNYIKAMRLFQDEPKWTP 150
                 ********************************************************86 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0     3e-13   8.9e-10      12      61 ..      79     132 ..      72     140 .. 0.91

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 3e-13
                 EEECSSSEEEEEEEEESEEEEEECTE.....EEEEETTEEEEE-TT-EEEEEE-S CS
     Cupin_2  12 pshrHpgedeffyVleGegeltvdge.....eveleaGdsvyfpagtpHrfrNtg 61 
                  +h H++e e++y+++Geg + v +e     +v+l+++d+++ pag  Hrf  ++
  KKY15747.1  79 NEHLHEDE-EIRYIVDGEGYFDVRSEgddwvRVKLRKDDLLILPAGIYHRFTTDE 132
                 58******.***************88889**********************7665 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   3.9e-09   1.2e-05      16      66 ..      78     133 ..      73     167 .. 0.92

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 3.9e-09
                   EEEETT-SEEEEEEEEE-EEEEETTEE.....EEE-TT-EEEE-TTS-EEEEE-TT CS
  AraC_binding  16 fpphvhdeyvihyvteGtgrlrlngrt.....ydlgpGdlfLlppgepHdyesdse 66 
                   f +h h+  +i y+++G+g++ ++ +      + l+++dl++lp g  H++  d+ 
    KKY15747.1  78 FNEHLHEDEEIRYIVDGEGYFDVRSEGddwvrVKLRKDDLLILPAGIYHRFTTDEK 133
                   899******************99999889999*******************99984 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.2e-06    0.0096      49     105 ..      81     134 ..      77     150 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.2e-06
                 EEESSS-EEEEEEESEEEEEEEETTSS.EEEEEE.EETTEEEEE-TT-EEEEEEESSS CS
     Cupin_1  49 hyhpnateiayvlqGegrvgfvvpgngnrdfhkk.lreGdvfvvPaglvhfqynsgde 105
                 h h   +ei y+++Geg++ + ++g+   d  ++ lr+ d++++Pag+ h +  ++++
  KKY15747.1  81 HLH-EDEEIRYIVDGEGYFDVRSEGD---DWVRVkLRKDDLLILPAGIYHRFTTDEKN 134
                 788.899***********88888887...666666***************99888765 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.1e-05     0.032      24      61 ..      84     125 ..      77     139 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
                 SSEEEEEEEECEEEEEET.TTEE...EEEETTEEEEE-TTEE CS
     Cupin_3  24 eedEfcyileGevkvtpe.gget...velraGDlvvlpkgls 61 
                 e +E+ yi+ Ge  + +  +g +   v+lr+ Dl+ lp+g  
  KKY15747.1  84 EDEEIRYIVDGEGYFDVRsEGDDwvrVKLRKDDLLILPAGIY 125
                 447888****9998888756666899**************84 PP

>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.4e-05      0.13      30      90 ..      84     144 ..      70     175 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.4e-05
     Cupin_6  30 fpaglalhvvlrGscwlidpasg.epvrLsagdvvllpggephvladspgtaplaviealge 90 
                  +++++++v  +G   ++++++   +v+L++ d+++lp g  h+++ +++    ++++ +++
  KKY15747.1  84 EDEEIRYIVDGEGYFDVRSEGDDwVRVKLRKDDLLILPAGIYHRFTTDEK-NYIKAMRLFQD 144
                 45568899999999****66656588*******************88877.33434433332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 1233.33
//
Query:       KKY15748.1  [L=595]
Description: putative transcription factor tfiiib component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-25   87.6   0.2    3.7e-25   87.6   0.2    2.2  3  Myb_DNA-bind_7   Myb DNA-binding like
    0.00017   21.7   0.0     0.0004   20.5   0.0    1.7  1  Myb_DNA-binding  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.6      0.86   7.7e+03      51      70 ..     235     254 ..     233     269 .. 0.59
   2 !   87.6   0.2   4.2e-29   3.7e-25       7      80 ..     411     485 ..     405     493 .. 0.91
   3 ?   -3.8   0.2       1.4   1.3e+04      51      59 ..     504     512 ..     497     535 .. 0.58

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.86
  Myb_DNA-bind_7  51 kEerknpeliekalkkrkel 70 
                     +E ++ ++ ++k+ +++++ 
      KKY15748.1 235 RESQNSKSTVKKTKSRKRQP 254
                     67777777777765555543 PP

  == domain 2  score: 87.6 bits;  conditional E-value: 4.2e-29
  Myb_DNA-bind_7   7 ktkkWskeetekFYkaLsqfGtDFsliaklfpkrtrrqlKlKFkkEerknpeliekalkkrke.ldleefkeeae 80 
                      ++kW++e+t++FY++L++fGtDFs+i+++fp+ +rr++K+KF kEer+npeli+++l  ++e  d++e++++ +
      KKY15748.1 411 GRNKWDEEMTHLFYRGLRMFGTDFSMISQMFPGMSRRHVKSKFVKEERQNPELIKQTLLGPREqADIAEISKMSN 485
                     5789*****************************************************9988888***99999876 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 1.4
  Myb_DNA-bind_7  51 kEerknpel 59 
                     kEe ++ + 
      KKY15748.1 504 KEEEQHAKA 512
                     333333322 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   4.5e-08    0.0004       1      43 [.     412     454 ..     412     456 .. 0.96

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4.5e-08
                      CSSSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwr 43 
                      r+kW ee  +l++++++++G +++ I+++++g ++ +++s++ 
       KKY15748.1 412 RNKWDEEMTHLFYRGLRMFGTDFSMISQMFPGMSRRHVKSKFV 454
                      79***************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1734  (0.0967148); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.47
# Mc/sec: 3781.31
//
Query:       KKY15749.1  [L=612]
Description: putative e3 ubiquitin-protein ligase bre1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-27   95.6   9.3    1.4e-27   95.6   9.3    5.9  4  BRE1          BRE1 E3 ubiquitin ligase
    1.2e-09   37.8   7.5    1.9e-09   37.3   7.5    1.3  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    1.4e-08   34.5   6.6    2.3e-08   33.8   6.6    1.4  1  Prok-RING_4   Prokaryotic RING finger family 4
    7.5e-08   32.1   8.7    1.3e-07   31.3   8.7    1.4  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    8.5e-08   32.0  10.0    1.4e-07   31.2  10.0    1.4  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    9.1e-07   29.1   8.7    1.5e-06   28.5   8.7    1.3  1  zf-RING_2     Ring finger domain
    1.6e-06   28.0   5.9    3.1e-06   27.1   5.9    1.5  1  zf-RING_UBOX  RING-type zinc-finger
    4.1e-06   26.6   9.8    6.8e-06   25.9   9.8    1.4  1  zf-RING_5     zinc-RING finger domain
     0.0074   16.4   6.3      0.013   15.6   6.3    1.4  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
  ------ inclusion threshold ------
       0.02   14.7   6.6       0.15   11.9   7.2    2.0  2  zf-RING_4     RING/Ubox like zinc-binding domain
      0.042   14.0   6.2       0.09   12.9   6.2    1.6  1  zf-RING_10    zinc RING finger of MSL2
       0.25   11.5  16.0       0.43   10.7   0.5    4.7  4  MbeD_MobD     MbeD/MobD like
       0.38   10.7   4.9      0.077   12.9   0.9    1.9  2  zf-C2HC_2     zinc-finger of a C2HC-type
       0.39   10.8   4.3       0.78    9.9   4.3    1.5  1  DUF1272       Protein of unknown function (DUF1272)
       0.51   10.7   6.3        1.6    9.1   6.3    1.8  1  zf-rbx1       RING-H2 zinc finger domain
       0.58   10.0   4.5       0.84    9.5   0.9    3.2  2  Sas6_CC       Sas6/XLF/XRCC4 coiled-coil domain
       0.69    9.6   6.4       0.14   11.8   2.9    1.7  2  Siva          Cd27 binding protein (Siva)
       0.95    9.1   5.1        1.7    8.3   5.1    1.3  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
        1.1    9.5   9.8         20    5.4   9.7    2.4  2  FYVE          FYVE zinc finger
        1.7    9.3   6.2        4.6    7.9   0.2    3.4  3  zf-C2H2       Zinc finger, C2H2 type
        1.7    8.3   4.9        3.2    7.5   4.9    1.4  1  zf-P11        P-11 zinc finger
        2.1    8.3   4.9        4.2    7.3   4.9    1.5  1  zf-C3HC4_5    Zinc finger, C3HC4 type (RING finger)
        4.5    8.4   6.2         59    4.9   0.1    3.5  3  zf-C2H2_4     C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   5.2      0.11        89      14      58 ..      72     116 ..      62     127 .. 0.80
   2 ?    0.7   9.0      0.73   5.7e+02      40      95 .]     269     324 ..     225     324 .. 0.76
   3 !   95.6   9.3   1.8e-30   1.4e-27       1      95 []     364     458 ..     364     458 .. 0.99
   4 ?    1.5   3.7      0.41   3.2e+02       5      76 ..     466     537 ..     463     557 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.11
        BRE1  14 elseqlskkvkeltileekklrleaekakadqkyfaamrskdale 58 
                 +l ++ ++ + +l++l+e+k  le   +ka   y+ a+++ d  +
  KKY15749.1  72 QLLSTEKTHLVQLASLQEEKEILEDRLEKASMRYMVAEKKLDRAK 116
                 55556666777999*************************999765 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.73
        BRE1  40 kakadqkyfaamrskdalenelkkLnkllsKsselieqLkelekefvrklkeleke 95 
                  a ad+    ++ ++d l +el + ++  ++++e+i++ +el ++  +++ +le e
  KKY15749.1 269 LATADKDVNRIRGNRDELLAELSMRKSVQEQERESIKKTQELAAAREERIVALESE 324
                 46799999999******************************999999999999875 PP

  == domain 3  score: 95.6 bits;  conditional E-value: 1.8e-30
        BRE1   1 lqkELvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKsselieqLkelekefvrklkeleke 95 
                 l++EL +l+ af    +++++kv+e+t+leek+lrl+aekakadqk+faam+sk+++++e+++L+ +++Ks+++++qLke+e++ ++++++lek+
  KKY15749.1 364 LNDELSSLQSAFPRYTRLANQKVAEFTALEEKVLRLTAEKAKADQKFFAAMKSKETRDAEVRTLRLQNTKSADVVSQLKESEAASRSLIANLEKQ 458
                 789*******************************************************************************************8 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.41
        BRE1   5 LvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKsselie 76 
                 +v l++a +++++++ + +  +  l+++++ l++  +  d ++ +   + +++e e+  L++ l+  +++ e
  KKY15749.1 466 IVTLTNASRAAQQEATEGKLLVDGLKNQVTELTKLVSDKDSQFASSASANRQRELEVESLKATLADTKKSLE 537
                 889999999999999999999999999999999999999999999999999999999999998887666655 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   7.5   2.4e-12   1.9e-09       4      46 ..     559     601 ..     556     604 .. 0.93

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 2.4e-12
                 B-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH.TT-B-TTT--B CS
  zf-C3HC4_3   4 eCviClerprnvvllpCgHlvlCeeCaekllk.rkkkCpiCrrp 46 
                 +C +C ++ +++v+  CgH+ lC++C+++    r++kCp C+r+
  KKY15749.1 559 ICTVCRKNFKDTVIKTCGHV-LCKDCVDERITsRSRKCPNCNRS 601
                 7*******************.******988877********986 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   6.6   2.9e-11   2.3e-08       1      43 [.     560     605 ..     560     608 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 2.9e-11
  Prok-RING_4   1 CvlCgeqekkailepCgHlvCkeCfdskdls...sCPlCqrrisks 43 
                  C +C+++ k+ +++ CgH++Ck+C d+   s    CP C+r + ++
   KKY15749.1 560 CTVCRKNFKDTVIKTCGHVLCKDCVDERITSrsrKCPNCNRSFGAQ 605
                  ***************************9666567*******98766 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   8.7   1.6e-10   1.3e-07       2      40 .]     560     598 ..     559     598 .. 0.93

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 1.6e-10
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLeekn.eCPlC 40 
                 C++C   +kd+ v++ CgHv C++C+++ +++ + +CP C
  KKY15749.1 560 CTVCRKNFKDT-VIKTCGHVLCKDCVDERITSRSrKCPNC 598
                 **********7.****************8777777***** PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2  10.0   1.9e-10   1.4e-07       1      41 []     560     598 ..     560     598 .. 0.99

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.9e-10
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41 
                 C +C +++k+++ + +C+H +C++C+++ +  ++++kCP+C
  KKY15749.1 560 CTVCRKNFKDTV-IKTCGHVLCKDCVDERIT-SRSRKCPNC 598
                 ************.******************.999****** PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   8.7   1.9e-09   1.5e-06       3      44 .]     560     599 ..     558     599 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 1.9e-09
   zf-RING_2   3 CpICleelssadsvlllpCgHvfhreClerwlrssst.CPlCr 44 
                 C++C ++++  d+v+++ CgHv +++C+++ ++s+s+ CP+C+
  KKY15749.1 560 CTVCRKNFK--DTVIKT-CGHVLCKDCVDERITSRSRkCPNCN 599
                 *****9996..677777.**********8855555555****5 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   5.9     4e-09   3.1e-06       1      39 []     560     596 ..     560     596 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 4e-09
  zf-RING_UBOX   1 CpIClelftdPlvl.pCGHtFCreClwelskslegafkCP 39 
                   C++C+  f+d  v  +CGH++C++C+    +  ++++kCP
    KKY15749.1 560 CTVCRKNFKDT-VIkTCGHVLCKDCV--DERITSRSRKCP 596
                   *********99.4337**********..788889999998 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   9.8   8.7e-09   6.8e-06       2      43 ..     560     599 ..     559     600 .. 0.96

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 8.7e-09
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll.ekeavCpiCr 43 
                 C +C++++   ++ ++ +CgH++C++C++++   ++++Cp C+
  KKY15749.1 560 CTVCRKNF---KDTVIKTCGHVLCKDCVDERItSRSRKCPNCN 599
                 ********...99*******************9*********8 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   6.3   1.7e-05     0.013       1      42 []     560     598 ..     560     598 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.7e-05
  zf-C3HC4_4   1 CPiCldYLekPvsleCGhsfClsCisslqkepdgeqllCplC 42 
                 C +C++ +++ v   CGh+ C  C+++   + +     Cp C
  KKY15749.1 560 CTVCRKNFKDTVIKTCGHVLCKDCVDERITSRSR---KCPNC 598
                 99*************************9999977...59999 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       1.4   1.1e+03      38      48 .]     558     568 ..     552     568 .. 0.79
   2 ?   11.9   7.2   0.00019      0.15      19      47 ..     574     602 ..     560     603 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.4
   zf-RING_4  38 grCPaCreeYk 48 
                 ++C  Cr+++k
  KKY15749.1 558 AICTVCRKNFK 568
                 68999999885 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00019
   zf-RING_4  19 eCgyqiClfCyhrileeeegrCPaCreeY 47 
                 +Cg+ +C +C ++ +++ + +CP+C + +
  KKY15749.1 574 TCGHVLCKDCVDERITSRSRKCPNCNRSF 602
                 69**********999999*******9987 PP

>> zf-RING_10  zinc RING finger of MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   6.2   0.00012      0.09       3      45 ..     560     601 ..     558     612 .] 0.74

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00012
  zf-RING_10   3 CvvCckLLvdPlepkekeCqHyvCrlCvgkkkklkp.sCsqCk.d 45 
                 C+vC k  +d +    k+C+H +C+ Cv ++   ++ +C++C+ +
  KKY15749.1 560 CTVCRKNFKDTV---IKTCGHVLCKDCVDERITSRSrKCPNCNrS 601
                 99**99999976...569**********98866554268888741 PP

>> MbeD_MobD  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.8     0.066        51      37      57 ..     177     197 ..     162     204 .. 0.79
   2 ?   -2.8   0.2       9.5   7.4e+03      24      27 ..     227     230 ..     209     256 .. 0.45
   3 ?    5.0   0.1     0.035        27      14      55 ..     356     400 ..     347     406 .. 0.79
   4 ?   10.7   0.5   0.00055      0.43      13      65 ..     449     501 ..     436     508 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.066
   MbeD_MobD  37 feltqrenaaLseqvtgLsqQ 57 
                  el + ena+L +qvt+L  Q
  KKY15749.1 177 LELLESENAKLMKQVTELQLQ 197
                 577888999999999999766 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 9.5
   MbeD_MobD  24 qeWe 27 
                 ++ e
  KKY15749.1 227 NNLE 230
                 3333 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.035
   MbeD_MobD  14 qLQqdYe...qrlqeWesafaelqrmfeltqrenaaLseqvtgLs 55 
                 +L ++Y+     l+  +saf  + r+ + +  e +aL+e+v +L+
  KKY15749.1 356 ELDRKYKmlnDELSSLQSAFPRYTRLANQKVAEFTALEEKVLRLT 400
                 566666511135566799**********9999*9*******9996 PP

  == domain 4  score: 10.7 bits;  conditional E-value: 0.00055
   MbeD_MobD  13 EqLQqdYeqrlqeWesafaelqrmfeltqrenaaLseqvtgLsqQVesLseqv 65 
                  +L ++ e++l+e ++a + l + +   q+e +  +  v+gL  QV +L + v
  KKY15749.1 449 RSLIANLEKQLSESKDAIVTLTNASRAAQQEATEGKLLVDGLKNQVTELTKLV 501
                 5788899*************************977777777777777776554 PP

>> zf-C2HC_2  zinc-finger of a C2HC-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2       4.4   3.4e+03       2      12 ..     557     567 ..     556     568 .. 0.81
   2 ?   12.9   0.9   9.9e-05     0.077       4      13 ..     594     604 ..     593     607 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.4
   zf-C2HC_2   2 lvpCpkCgRsF 12 
                 l  C  C   F
  KKY15749.1 557 LAICTVCRKNF 567
                 678999*9888 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 9.9e-05
   zf-C2HC_2   4 pCpkCgRsF.n 13 
                 +Cp+C+RsF +
  KKY15749.1 594 KCPNCNRSFgA 604
                 8********44 PP

>> DUF1272  Protein of unknown function (DUF1272)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.3     0.001      0.78       8      48 ..     560     599 ..     553     605 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
     DUF1272   8 CecCdkdlppdseearicsyEctFCaeCaeevl...envCPncg 48 
                 C  C k+     ++++i +  +  C++C++e++   +  CPnc+
  KKY15749.1 560 CTVCRKNF----KDTVIKTCGHVLCKDCVDERItsrSRKCPNCN 599
                 66666655....46679999999********99555578****8 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   6.3     0.002       1.6      14      55 .]     560     599 ..     556     599 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.002
     zf-rbx1  14 cieckapgdeecpvvlGeCgHaFHlhCiskWlkt.rkvCPlcr 55 
                 c+ c+++ ++ ++++  +CgH+  ++C+++ +++ +++CP c+
  KKY15749.1 560 CTVCRKNFKD-TVIK--TCGHVLCKDCVDERITSrSRKCPNCN 599
                 8889999888.4444..6***********999885788****7 PP

>> Sas6_CC  Sas6/XLF/XRCC4 coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.9    0.0011      0.84      12      28 ..      84     100 ..      84     101 .. 0.94
   2 ?   -1.2   0.1       2.4   1.8e+03      21      29 ..     454     462 ..     453     463 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHHHHHH CS
     Sas6_CC  12 LkslKeeKqlLeqkLkk 28 
                 L+sl eeK+ Le++L+k
  KKY15749.1  84 LASLQEEKEILEDRLEK 100
                 899************98 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.4
                 HHHHHHHHH CS
     Sas6_CC  21 lLeqkLkkT 29 
                 +Le++L+++
  KKY15749.1 454 NLEKQLSES 462
                 8*****986 PP

>> Siva  Cd27 binding protein (Siva)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1        10   7.8e+03      61      98 ..     153     192 ..     150     202 .. 0.58
   2 ?   11.8   2.9   0.00018      0.14      88     163 ..     538     610 ..     468     612 .] 0.76

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 10
        Siva  61 eeaideeesskpgevsapqlarGq..mliGqdGklirala 98 
                 +e++ e e+s+   ++++q ++ q  +l  ++ kl++  +
  KKY15749.1 153 NEGVAELEESHHKALAVTQRQKEQleLLESENAKLMKQVT 192
                 5666555555555555555544441156678888888754 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00018
        Siva  88 GqdGkliralaqsseasptgasiacsscvrsvddkavcsqcerllckqcvrtcsscsalacslctlvdysdeyekv 163
                 G + k +    qsse ++  +   c++c +  +d +v   c  +lck+cv    +  +  c  c     +++y kv
  KKY15749.1 538 GWKSKSLG--NQSSEFEMLRSLAICTVCRKNFKD-TVIKTCGHVLCKDCVDERITSRSRKCPNCNRSFGAQDYMKV 610
                 44444443..488888888877789999999877.78899************999999999999887777666665 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.1    0.0022       1.7       5      46 ..     558     596 ..     554     600 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0022
  Zn_ribbon_17   5 ksCayCelavkgrvvlcgvCeHvlHasCarewfenddlaeCp 46 
                     C++C  + k  v+  + C+Hvl ++C++e  +     +Cp
    KKY15749.1 558 AICTVCRKNFKDTVI--KTCGHVLCKDCVDERITSRS-RKCP 596
                   569999988888765..89************998888.8888 PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   9.7     0.026        20       9      47 ..     557     591 ..     550     601 .. 0.77
   2 ?    2.9   0.3      0.16   1.2e+02       7      20 ..     590     603 ..     587     608 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.026
                 -SB-TTT--B--SSS--EE-TTT--EE-STTS-EEE.EE CS
        FYVE   9 vkkCeiCakkFsllrrrhhCrlCGkvvCekCssklvall 47 
                  + C+ C+k+F+ +      ++CG+v+C++C ++++++ 
  KKY15749.1 557 LAICTVCRKNFKDT----VIKTCGHVLCKDCVDERITSR 591
                 5679*******554....3469***********998654 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
                 .--SB-TTT--B-- CS
        FYVE   7 sevkkCeiCakkFs 20 
                 s+++kC++C+++F 
  KKY15749.1 590 SRSRKCPNCNRSFG 603
                 57899*******96 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       3.4   2.7e+03      10      20 ..      28      38 ..      28      40 .. 0.90
   2 ?    2.6   0.5      0.29   2.2e+02       3      12 ..     560     569 ..     559     571 .. 0.90
   3 ?    7.9   0.2    0.0059       4.6       2      17 ..     594     609 ..     594     610 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 3.4
                ESSHHHHHHHH CS
     zf-C2H2 10 FkrksnLkrHi 20
                F++++++k+H+
  KKY15749.1 28 FSDNDEFKTHL 38
                999*******7 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.29
                 ETTTTEEESS CS
     zf-C2H2   3 CpdCgksFkr 12 
                 C++C k Fk+
  KKY15749.1 560 CTVCRKNFKD 569
                 ********97 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0059
                 EETTTTEEESSHHHHH CS
     zf-C2H2   2 kCpdCgksFkrksnLk 17 
                 kCp C++sF  ++ +k
  KKY15749.1 594 KCPNCNRSFGAQDYMK 609
                 7********9888765 PP

>> zf-P11  P-11 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.9    0.0042       3.2       5      42 ..     560     599 ..     556     604 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0042
                 BTTTSS--S.SEEE-SSSEEEHHHHH.HHHHHSSBETTTS CS
      zf-P11   5 CksCWfkdk.sLveCsdHYLClrClq.llLsvserCpiCk 42 
                 C  C  ++k  +++   H LC+ C +  + s s +Cp C 
  KKY15749.1 560 CTVCRKNFKdTVIKTCGHVLCKDCVDeRITSRSRKCPNCN 599
                 88998887625678889*******86268899******97 PP

>> zf-C3HC4_5  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.9    0.0054       4.2      21      47 ..     571     597 ..     558     600 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0054
  zf-C3HC4_5  21 inpeCYhkmCesCvdRlFsdGPnqCPv 47 
                 +   C h +C+ Cvd   ++   +CP 
  KKY15749.1 571 VIKTCGHVLCKDCVDERITSRSRKCPN 597
                 5568***********999999999*96 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       2.7   2.1e+03      10      22 ..      28      40 ..      27      42 .. 0.88
   2 ?    3.9   0.6      0.16   1.2e+02       2      12 ..     559     569 ..     559     578 .. 0.89
   3 ?    4.9   0.1     0.076        59       2      11 ..     594     603 ..     593     610 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 2.7
   zf-C2H2_4 10 FsskkaLlrHlkt 22
                Fs+++++++Hl++
  KKY15749.1 28 FSDNDEFKTHLEN 40
                9999******975 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.16
   zf-C2H2_4   2 kCpiCgksFss 12 
                 +C++C+k+F++
  KKY15749.1 559 ICTVCRKNFKD 569
                 5********96 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.076
   zf-C2H2_4   2 kCpiCgksFs 11 
                 kCp C++sF 
  KKY15749.1 594 KCPNCNRSFG 603
                 8********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2460  (0.137208); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                        56  (0.00312343); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 1.17u 0.38s 00:00:01.54 Elapsed: 00:00:00.59
# Mc/sec: 3143.21
//
Query:       KKY15750.1  [L=309]
Description: putative urease accessory protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-23   82.2   1.2    7.3e-23   81.6   1.2    1.2  1  UreF      UreF


Domain annotation for each model (and alignments):
>> UreF  UreF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   1.2   4.1e-27   7.3e-23       5     129 ..     101     262 ..      98     264 .. 0.91

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 4.1e-27
                 HHHHHHHHHHHTTHHHHTHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHH-........................... CS
        UreF   5 aslaawledqLllglarldlavlarayraaragdaaalrelddwllatretaelrlaseqmGrsllrllrkl........................... 76 
                 ++++ +l+ + l +++++++++l++a+r  r     +l++ld+ l+a++++ ++r+as ++Gr+ll ++++                            
  KKY15750.1 101 SNFQSFLHLS-LSSVSYTNVPYLLAAHRSSR-----SLQDLDNDLDASTPCTVARRASIAQGRALLGVWERSfrstwnsdtlrnasevesaqvlrdfsq 193
                 6789999999.899*************9997.....******************************************999999999988888887777 PP

                 .................-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHH CS
        UreF  77 .......t.........hypvafglaaaalgipleeallaylfswaenlvsAavklvplGqtagqrila 129
                        +         h++ ++g++a+ +g++  +a++++l ++a++++sAav++  +G++++q +la
  KKY15750.1 194 amkvssdVvpvttqvngHFAPLWGATAHVMGLDSYQAAYVFLINHAKAVLSAAVRASVMGPYQAQGLLA 262
                 77666650556678899**************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.52
# Mc/sec: 1786.77
//
Query:       KKY15751.1  [L=335]
Description: putative sun domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-69  234.5  12.9    1.4e-69  234.2  12.9    1.1  1  SUN       Beta-glucosidase (SUN family)
  ------ inclusion threshold ------
        3.4    7.2   5.5        6.4    6.3   5.5    1.4  1  SR-25     Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> SUN  Beta-glucosidase (SUN family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.2  12.9   1.6e-73   1.4e-69       1     240 [.      64     317 ..      64     322 .. 0.92

  Alignments for each domain:
  == domain 1  score: 234.2 bits;  conditional E-value: 1.6e-73
         SUN   1 dgkikCsefp.sdeglvavdalglgGwagiqd..........vkgesqeCkegsyCsyaCppGylktqwpsaqgatgssvGGLyCnkdGklektnkdsk 88 
                 dg+++Cs+ p +++g+++vd+l+l+Gw+g+q           + +++++C++g+ Csy+C pG +k qw s+q+ +g+++GGL+C kdG l+++n++ +
  KKY15751.1  64 DGTLSCSDGPpTKYGAITVDYLDLAGWSGLQVlssdyseiesTGTSGDSCTSGMACSYSCAPGWQKLQWNSDQPDDGTTIGGLLC-KDGLLYLANNN-T 160
                 68999*997549*******************999*****9963334678************************************.7********99.9 PP

         SUN  89 klCekgagkvkvknklsksvavCrTdyPGtEamlipteveagssaelavpdedtyykwkgkktsaqYYvNkaGvsvedaCvWgseskp.vGNwaplvlG 186
                 +lC +g+g  +v+nk+s+ ++vCrTdyPGtEa+++p++v++g++++l++p e++y++w+g+ tsaqYY+N+ G++++ +C W+ +++   GN ap+ +G
  KKY15751.1 161 QLCGQGNGLTYVENKASSGISVCRTDYPGTEAETVPLDVSSGDTQPLTTPIEEEYFEWQGSYTSAQYYLNPIGTEADPGCSWDGNGDGnSGNSAPITIG 259
                 **********************************************************************************87766549********* PP

         SUN 187 agkdedgktylsifqN.ptskeklnfnvkieaeegdsvsgkCkyesgklskggg.......a 240
                 ag+ + g+t+lsi qN pt+ ++ +  v+i   +gds sg+C ye+g++++++g        
  KKY15751.1 260 AGQLD-GTTWLSISQNtPTTYNAYSGRVEI---SGDSLSGSCYYENGEFCSDSGctehtvsG 317
                 ****9.************************...999**************884434444444 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   5.5   0.00072       6.4      51      79 ..      19      48 ..       8      61 .. 0.44

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00072
       SR-25 51 rskekkkkkr.rrsssssssssssssssss 79
                r+ + +++ + r+ s+++s sssss+sss 
  KKY15751.1 19 RHAHVHRHVHvREASATASASSSSSTSSSD 48
                333333333303333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2309.80
//
Query:       KKY15752.1  [L=312]
Description: putative hlh transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-11   42.7   0.0    9.3e-11   41.5   0.0    1.7  1  HLH       Helix-loop-helix DNA-binding domain
  ------ inclusion threshold ------
      0.086   12.5   1.5       0.12   12.0   0.3    1.9  2  DUF1366   Protein of unknown function (DUF1366)


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0     1e-14   9.3e-11       2      52 ..     196     264 ..     195     265 .. 0.95

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 1e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHCST..................CSTTSS-STHHHHHHHHHHHHHHH CS
         HLH   2 raahnerErrRRdriNsaleeLrellP..................slppskKlsKaeiLekAveYIkhL 52 
                 r+ah+++Er++R+++N +leeL + +                   +l+++ K  K++iL +A+ YI + 
  KKY15752.1 196 RQAHSLVERKYRENLNAKLEELHDAIQgiqmgrksgnrsavqsqpALGSGGKARKSDILAEAITYIYQS 264
                 99**************************************99999999999***************775 PP

>> DUF1366  Protein of unknown function (DUF1366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.59   5.3e+03      60      71 ..     146     157 ..     135     164 .. 0.73
   2 ?   12.0   0.3   1.4e-05      0.12      46      98 ..     250     302 ..     247     312 .] 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.59
     DUF1366  60 elfPqrAenEkF 71 
                 +  Pq A+ Ek 
  KKY15752.1 146 QSSPQEAQREKA 157
                 456777777774 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 1.4e-05
     DUF1366  46 ntellkeaekviYqelfPqrAenEkFneldeliekakatiektEemlkaatet 98 
                 ++++l ea   iYq +   r   +    l++l++  +++i+k E+ +   +++
  KKY15752.1 250 KSDILAEAITYIYQSQVDMRHMADEIGRLKALTKPEEKQINKCEDCSLRKQVM 302
                 699*****************************************987666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1244  (0.0693848); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 2029.51
//
Query:       KKY15753.1  [L=236]
Description: putative cell surface spherulin 4-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-54  182.6   5.6    1.1e-53  182.3   5.6    1.0  1  Spherulin4  Spherulation-specific family 4


Domain annotation for each model (and alignments):
>> Spherulin4  Spherulation-specific family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.3   5.6   6.4e-58   1.1e-53      21     238 ..       8     221 ..       6     223 .. 0.93

  Alignments for each domain:
  == domain 1  score: 182.3 bits;  conditional E-value: 6.4e-58
                 HHHH-TTS-EEEEE-SSSSS-SSSS--HHHHHHHHHHHTSTTEEEEEEEE-TTTTS-HHHHHHHHHHHHHHHH....TS--SEEEEES--S..-HHHHH CS
  Spherulin4  21 aikanpslefvvivNPgsGPgsaplpdadYsaalkklsaytnvevlGYvatgygkrelsevkkdidtYaawls....airldGIFvDEvpt..dakyld 113
                 a++++p+++f +i+NP sGPgs+  pd++Y a ++kl++y+n ++lGYv t+y++r++s+v +did+Ya+w++    +i++dGIF+DE+p+  ++++++
  KKY15753.1   8 AVASAPDVQFNIIINPASGPGSTVYPDSNYIAGVAKLNSYSNTKLLGYVPTTYARRSQSSVLSDIDRYAKWSTykaaDIHMDGIFFDETPStyTSAAAS 106
                 78999*******************************************************************9******************999***** PP

                 HHHHHHHHHHHSTTSTTT-EEEEE-SS---GGGG.GGSSEEEEEEEEHHHHHHT...TGGGGG..--GGGEEEEEE---TTS-T..HHHHHHHHHHHH. CS
  Spherulin4 114 ylqritdlvkssaattkeaivihNPGtvsedaffsrlaDyvvvfEnslaayedsgdkvsanlatpekrakaaavvhtvektensekeaikklveavtqh 212
                 y+++i++ vkss + + ++++++NPG+v++++++ + a++vv  En  + +++s + +   + ++  rak+a+++h+++ t++++k+    ++++++++
  KKY15753.1 107 YMSTISARVKSSLG-SANNYIVFNPGVVVDSRYY-NYANLVVAWENYAKYFSTSSSIS---AIPKAVRAKTAVILHHFTGTTTTQKT----IINNIVNQ 196
                 *************9.99*****************.***********999999994444...44567*************99877664....78888888 PP

                 H-SEEEE---SSSTSS--TTHHHHHH CS
  Spherulin4 213 klggvflTdatddYatfssgweefve 238
                 +++gv++T+ +d ++++++ w++f++
  KKY15753.1 197 GVKGVYITSSSD-FTSYPQLWTSFCS 221
                 ************.*********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1573.47
//
Query:       KKY15754.1  [L=232]
Description: hypothetical protein UCRPC4_g06159 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1484.69
//
Query:       KKY15755.1  [L=847]
Description: putative d-xylulose 5-phosphate d-fructose 6-phosphate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.8e-152  507.4   0.0   2.3e-152  507.0   0.0    1.1  1  XFP_N         XFP N-terminal domain
      3e-75  252.1   0.0    4.5e-75  251.6   0.0    1.3  1  XFP_C         XFP C-terminal domain
    1.6e-74  249.5   0.0    2.3e-74  248.9   0.0    1.2  1  XFP           D-xylulose 5-phosphate/D-fructose 6-phosphate p
  ------ inclusion threshold ------
      0.019   14.7   0.1      0.042   13.6   0.1    1.5  1  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
      0.081   12.8   0.0       0.21   11.4   0.0    1.8  1  SH3_9         Variant SH3 domain


Domain annotation for each model (and alignments):
>> XFP_N  XFP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  507.0   0.0  6.4e-156  2.3e-152       2     362 ..      34     392 ..      33     394 .. 0.97

  Alignments for each domain:
  == domain 1  score: 507.0 bits;  conditional E-value: 6.4e-156
       XFP_N   2 iseeelkkldkywraanylavgliylkdnpllreplkeedvkarllGhwGtvpGlsflyahlnriikkydqnmlyvvGPGhGgpalvaasylegsysel 100
                 ++e++l+ l  y +aa+y+a+++i+l+dn ll+++lk+e+vk+rllGhwGt+pG++++yahln +ik +d++ml+++GPGhG+pa +a ++le+s++++
  KKY15755.1  34 LDEDTLEGLRSYRKAADYIAAAMIFLQDNVLLEDELKPENVKSRLLGHWGTCPGINLVYAHLNLLIKTHDLDMLFICGPGHGAPAPLACLWLEDSLGHF 132
                 57899********************************************************************************************** PP

       XFP_N 101 ypeiskdeeGlkklfkqfsfPGGipshvaaetPGsiheGGelGyalshayGavldnPdlivacvvGdGeaetGPlatswhsnkflnPaedGavlPilel 199
                 y+++s+d++Gl kl+ +fs P G+psh++a++PGsiheGGelGyals+ayGav+d+Pdli+ c+vGdGeaetGP+at+wh+ k+++P+e+Gav+Pil++
  KKY15755.1 133 YADYSRDRQGLTKLITKFSTPSGFPSHINAQVPGSIHEGGELGYALSVAYGAVMDKPDLIACCMVGDGEAETGPTATAWHACKYIDPKESGAVIPILHV 231
                 *************************************************************************************************** PP

       XFP_N 200 nGykisnptilarisdeelkklfeGlGyepafvededteslhkllaevldkaveeihdiqkearsneeasrPkwPmiilrtPkGwtgPkyvdGkkvegs 298
                 nG+kis++ti++++++ el  lf+G+Gy p+fve  d   ++  +a  +++av+ei +iq++ars +  ++P+wPmiilrtPkG++gPk v G++vegs
  KKY15755.1 232 NGFKISERTIFGCMDNRELAVLFSGYGYIPTFVEYPDC--IDAHMAGAIEWAVQEIRKIQQAARSGKPIVKPRWPMIILRTPKGFGGPKKVHGEFVEGS 328
                 **********************************9665..556699***************************************************** PP

       XFP_N 299 frahqvPlalarentaklellkewlksykpeelfdedgslkeelkelaPkg.ekrlaanpeangg 362
                 frahqvPl+  +++ta+l+ll+ wl+sy p+elf  dg+++ee+  ++P++  krl++np a+++
  KKY15755.1 329 FRAHQVPLTNVKTDTAELQLLERWLSSYAPDELFT-DGKPNEEVLRIVPENpSKRLGQNPIAYDS 392
                 **********************************6.79999**999*9986479*******9987 PP

>> XFP_C  XFP C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.6   0.0   1.3e-78   4.5e-75       1     199 [.     598     803 ..     598     806 .. 0.95

  Alignments for each domain:
  == domain 1  score: 251.6 bits;  conditional E-value: 1.3e-78
       XFP_C   1 KqpepqylsldeAeehckkGasiwewastdegeepdvvlagiGdeptlEvlaAvellreelpelkvrvvnvvdLmkl...qeesehphglsdeefdelF 96 
                 K+p+p++l+++eA++hck+G siw++astd+g +pdvvl+giG+e ++Ev+aA++ lr+ lp+lkvrvvnv+dLm+l   +ees hph+l++++fd++F
  KKY15755.1 598 KHPQPVWLTPEEAAKHCKAGTSIWKFASTDSGLNPDVVLVGIGSELMFEVIAAAAYLRQILPSLKVRVVNVTDLMVLgspNEESAHPHALTTTAFDTIF 696
                 9****************************************************************************43334579************** PP

       XFP_C  97 tkdkpvifnfHgYptlikrLlykrknherlhvrgYkeeGtttTpfdmlvlnevdRfhlaidai....krveklkkkaaelaeklkekleehkkyireeg 191
                 t dk+++fn+HgY+++i++Ll++r++ +r++v++Y+eeG+ttTpfdml++n++dRfh+a++a+    k++ +l+++ +++ ek+++ ++++++ i e+g
  KKY15755.1 697 TPDKHIHFNYHGYASEIQGLLFGRPKLDRVSVTAYMEEGSTTTPFDMLMRNRCDRFHVAMAAVnaaaKHNWSLRHHKDQILEKIRKDIRDTQDLILEKG 795
                 ***************************************************************6666666668899*********************** PP

       XFP_C 192 eDlpeved 199
                  D++ +++
  KKY15755.1 796 ADPEALYK 803
                 ***99876 PP

>> XFP  D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.9   0.0   6.4e-78   2.3e-74       3     176 .]     418     587 ..     416     587 .. 0.97

  Alignments for each domain:
  == domain 1  score: 248.9 bits;  conditional E-value: 6.4e-78
         XFP   3 lgkylrdvlkknpenfrifgPDetaSnrLnavfevtkrqwqeeieeedeelaaeGrvievlsEhlcegllegYlltGrhglfasyEaflrivdsmvnqh 101
                  g++l++vl +np+++rif+PDe+ Sn+++avf +t r++q+    ++ ++++ G+v e+lsEh+c+g+l+gY+ltGr+g+++syE+fl iv++m++q+
  KKY15755.1 418 AGEFLDQVLVNNPHKLRIFSPDEMISNKFDAVFRHTGRNFQW----DQFSMNKGGQVTEILSEHTCQGFLQGYTLTGRTGILPSYESFLGIVHTMMVQY 512
                 699***************************************....44566779********************************************* PP

         XFP 102 akflkkakelewrkdvaslnllltstvwrqdhNgfsHqdpglidavlnkkaevvrvylPpDaNtllsvldhclrs 176
                 akf+k++ke++wrkdv+s+n+++tst++rq+hNg+sHq+p++i+avln k++++r+ylPpD Nt+ls+l+hcl+s
  KKY15755.1 513 AKFAKISKETPWRKDVSSINYIETSTWTRQEHNGLSHQNPSFIGAVLNLKPSIARIYLPPDPNTFLSTLHHCLKS 587
                 *************************************************************************97 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.2e-05     0.042      28      58 ..     172     202 ..     157     219 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-05
                   S-TTTHHHHHHHHHHHSTTSEEEEEEEHHHH CS
  TPP_enzyme_C  28 gtmGyglpaAiGaklakpdrevvaivGDGgf 58 
                   g +Gy+l++A Ga + kpd    ++vGDG  
    KKY15755.1 172 GELGYALSVAYGAVMDKPDLIACCMVGDGEA 202
                   789**************************86 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     6e-05      0.21       1      45 [.     448     497 ..     448     498 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6e-05
       SH3_9   1 Alypyepredde..LsLqrGDvitvi.ee.sedgWlegsl.tGrtGlvPa 45 
                 A+++++ r+ ++  +s+++G  +t i +e +  g+l+g   tGrtG +P+
  KKY15755.1 448 AVFRHTGRNFQWdqFSMNKGGQVTEIlSEhTCQGFLQGYTlTGRTGILPS 497
                 788888888774449*****999998877366******955********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (847 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 6098.40
//
Query:       KKY15756.1  [L=706]
Description: putative mfs multidrug transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-27   96.6  13.5    1.4e-27   96.6  13.5    3.2  3  MFS_1     Major Facilitator Superfamily
    2.4e-11   42.8  14.4      3e-11   42.5  10.9    2.1  2  TRI12     Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
      0.019   14.9   1.1      0.019   14.9   1.1    4.1  5  DUF2975   Protein of unknown function (DUF2975)
      0.061   14.3   1.7       0.39   11.7   0.1    2.8  2  DUF4834   Domain of unknown function (DUF4834)
       0.56   10.5   0.0       0.56   10.5   0.0    2.4  3  MLANA     Protein melan-A


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6  13.5   3.8e-31   1.4e-27       6     179 ..     110     280 ..     106     295 .. 0.90
   2 ?    2.7  33.4     0.013        48     133     330 ..     303     499 ..     284     521 .. 0.63
   3 ?   -2.4  17.4      0.47   1.7e+03      41     189 ..     419     626 ..     418     671 .. 0.78

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 3.8e-31
       MFS_1   6 flsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalf 103
                 +l++l+ ++++++l+ ++a+++    +++g+++t+y+l++  +++ +G l+d +Gr   l ++++l+++g++l++ a++ w +ll++r+lqG+ a++++
  KKY15756.1 110 LLASLDVTVVASSLS-FIASHFD-RLDQLGWIVTAYTLTSTTFVPAFGQLADVYGRHVSLQFTMALMVIGSTLCA-AAQTWgMLLFGRALQGMSAAGIM 205
                 678899999999999.*******.**********************************************77777.488899***************** PP

       MFS_1 104 pagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepper 179
                 +++ +++ad ++ +e ++ + +++  ++ ++  gp++gg+l+ +++Wr++f+i  +++++a +l+++ll+ e  + 
  KKY15756.1 206 SISSIVLADKVSLKENAKNNTIFQFIAGTSYSYGPVIGGYLT-NANWRYCFVISIPIAIFAHILIFVLLRNELLPG 280
                 ******************************************.99****************997666655444333 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.013
       MFS_1 133 Gailgpllgglla.sslg.....Wrav.fyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwillialllfffgfs 224
                  +i   ++g +++ +++g     W+++  ++  +v+ ++f+ f+++ +  +p r  ++  ++     + +++p ++++ ++   + + ++ + ++++++
  KKY15756.1 303 LFI--LGIGLIILgTAWGgatyaWSSAaVLVPIVVGGILFMAFFIYEYLLEPGRYLNRLLPR-----QNAMIP-FSLFIRKDLYL-VAAIQFATGAALY 392
                 222..333333333444456655555536777777777777666666777777777777666.....788899.88888888443.7777777778999 PP

       MFS_1 225 glltllplylqevlgls....glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt...ssavllll..vlvliGfgl 314
                 ++++++ +y+  v +++    g ++++  + ++++++   ++ ++ ++  + +  + + ++l++l+ ++g+ l+ ++    + ++  +  ++ l+G+g 
  KKY15756.1 393 SIFYFIGIYFTLVENYDageaG-VQLL--YYIPGIAV---GVYSAMFMSNIYPGSTFISIFLGTLIETAGIGLIVHAveaRNIAF--VngMMGLAGVGT 483
                 9****************86766.6666..77777777...888888887777788888888888888888888888843222222..133666666666 PP

       MFS_1 315 gfvfpsllalasdlap 330
                 g+ f ++   ++   p
  KKY15756.1 484 GLRFMPAVLHVAGIWP 499
                 6655555555555555 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.47
       MFS_1  41 yal.gaavaslplGrlsdrf.Grrr.vlllglllfalglllllf.a...sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfsl 132
                 y++ g av+++ ++++s+ + G+    ++lg l+  +g + l++ a    ++ ++  +  l+G+g+g+ f  ++  +a ++p  + + a++l+  +  +
  KKY15756.1 419 YYIpGIAVGVYSAMFMSNIYpGSTFiSIFLGTLIETAG-IGLIVhAveaRNIAFVNGMMGLAGVGTGLRFMPAVLHVAGIWPT-RLAPALSLMRFALPF 515
                 5555789999999******9566666666777777777.222222257466669999999**********************9.*************** PP

       MFS_1 133 Gailg.pllggllasslg..........................................Wravfyilaivsllafv..lfllllpeepperkrkspke 186
                 G  l+  + ++++  +l+                                            ++f+ + ++++l+++  lfl  ++ +++  k+ ++k+
  KKY15756.1 516 GGTLAlTIMSSVFNNQLNdldidsgdlragtssastsslsaiaklppamqrlvrnkaksgVKWAFVSILPILFLSVIasLFLGNVWIKQRGGKKTEEKK 614
                 **8885777777778888999999999999999999999999999999999999999999999999999999999774444444466666666555555 PP

       MFS_1 187 ee.........k 189
                 +          +
  KKY15756.1 615 KNgmqqqstaiQ 626
                 534444445440 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5  10.9   8.4e-15     3e-11      63     298 ..     119     354 ..     109     387 .. 0.86
   2 ?    1.2   0.1     0.026        93     210     260 ..     552     601 ..     546     618 .. 0.82

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 8.4e-15
       TRI12  63 sasalpnilqdvgqsensslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgv.aagpagasplfvgelms 160
                  as+l  i     + ++ + + t +t+  +  +  +g+l+d +gr   +  t  l ++g+ + ++a+ +  ll   +l g+ aag    s +++ + +s
  KKY15756.1 119 VASSLSFIASHFDRLDQLGWIVTAYTLTSTTFVPAFGQLADVYGRHVSLQFTMALMVIGSTLCAAAQTWGMLLFGRALQGMsAAGIMSISSIVLADKVS 217
                 6788888888888999999999**********************************************************846788999********** PP

       TRI12 161 nktkflgllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsf.aqlhgkkvrkreelakldwigiilvivgvslfllgv 258
                  k +     i    + +  + +p +g  l+ + +wr+ f i i ++  a +li v      +  +  g + +    la +d  g +l i g+ l++lg 
  KKY15756.1 218 LKENAKNNTIFQFIAGTSYSYGPVIGGYLT-NANWRYCFVISIPIAIFAHILIFVLLRNELLpGKNTGSRKSFFAGLATIDAGGTVLFILGIGLIILGT 315
                 999888877776666666669******997.78****************9999999877654134556666666789********************** PP

       TRI12 259 swggkpnspwnsakviglissglgslvvfalyevygkpvr 298
                 +wgg     w sa v+  i  g   ++ f +ye    p r
  KKY15756.1 316 AWGGAT-YAWSSAAVLVPIVVGGILFMAFFIYEYLLEPGR 354
                 ****86.57***9999988888888889999998877755 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.026
       TRI12 210 vllivvwyyppsfaqlhgkkvrkreelakldwigiilvivgvslfllgvsw 260
                   l  +   pp++++l  +k++   + a +  + i++++v +slfl  v w
  KKY15756.1 552 SSLSAIAKLPPAMQRLVRNKAKSGVKWAFVSILPILFLSVIASLFLGNV-W 601
                 556678889************************************8554.4 PP

>> DUF2975  Protein of unknown function (DUF2975)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   1.1   5.2e-06     0.019      46     111 ..     120     183 ..     116     187 .. 0.90
   2 ?   -1.6   0.2      0.62   2.2e+03      90      90 ..     279     279 ..     245     318 .. 0.51
   3 ?   -5.5   6.7         5   1.8e+04      69      75 ..     387     398 ..     315     472 .. 0.59
   4 ?   -3.2   0.0       2.1   7.5e+03      71     105 ..     485     519 ..     466     529 .. 0.54
   5 ?   -3.6   0.1       2.6   9.4e+03     100     117 ..     579     596 ..     569     597 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.2e-06
     DUF2975  46 rkgevFspanvrrLrriglaliaaalllaagivalallaelelapgvvllllgvafaslvigllvl 111
                 + +  F ++ + rL+++g+++ a++l+ ++ ++a+ +la+  + + +v l + +a+++++  l+++
  KKY15756.1 120 ASSLSFIASHFDRLDQLGWIVTAYTLTSTTFVPAFGQLAD--VYGRHVSLQFTMALMVIGSTLCAA 183
                 556689999*******************************..889999999999999999999986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.62
     DUF2975  90 p 90 
                 p
  KKY15756.1 279 P 279
                 2 PP

  == domain 3  score: -5.5 bits;  conditional E-value: 5
     DUF2975  69 a.....alllaa 75 
                 +     ++ +++
  KKY15756.1 387 TgaalySIFYFI 398
                 222233333333 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 2.1
     DUF2975  71 lllaagivalallaelelapgvvllllgvafaslv 105
                 l ++++++++a++  + lap + l+ + + f++ +
  KKY15756.1 485 LRFMPAVLHVAGIWPTRLAPALSLMRFALPFGGTL 519
                 45555566666665545666555555555555433 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 2.6
     DUF2975 100 afaslvigllvlvlaell 117
                 af+s++  l++ v+a l+
  KKY15756.1 579 AFVSILPILFLSVIASLF 596
                 344444445555555444 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.2      0.47   1.7e+03       8      34 ..     255     281 ..     252     292 .. 0.71
   2 ?   11.7   0.1   0.00011      0.39       9      71 ..     584     647 ..     578     662 .. 0.40

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.47
     DUF4834   8 lifiiailviglsilsvilrtvfglgs 34 
                 +++ i i++++ ++++v+lr+ +  g+
  KKY15756.1 255 FVISIPIAIFAHILIFVLLRNELLPGK 281
                 677788999999999999998655443 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00011
     DUF4834   9 ifiiailviglsilsvi.lrtvfglgsrkkssksaqkqfgnstnsnqqksqsrsetkeegeiie 71 
                 + i+++ vi+  +l+++ +++  g+   +k+++ +q+q++  ++++qq+s + + + +e++i+e
  KKY15756.1 584 LPILFLSVIASLFLGNVwIKQRGGKKTEEKKKNGMQQQSTAIQKQQQQQSADLKPEIDEEKIVE 647
                 2334444444444444313333223333333333444444444444444433333333333333 PP

>> MLANA  Protein melan-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.2       4.5   1.6e+04      78     100 ..      13      35 ..       6      48 .. 0.60
   2 ?   -3.9   0.3       4.7   1.7e+04      25      40 ..     298     313 ..     286     317 .. 0.58
   3 ?   10.5   0.0   0.00016      0.56      30      88 ..     586     642 ..     552     660 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4.5
       MLANA  78 akadsklalqefknfesvvpdap 100
                 +++ +kla  e+++  s v   p
  KKY15756.1  13 QEKAAKLAEAENRSAASKVIPVP 35 
                 45567777777776666655444 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 4.7
       MLANA  25 aaGigllvvvLailll 40 
                 a G +l+++ +++++l
  KKY15756.1 298 AGGTVLFILGIGLIIL 313
                 5555555554444333 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00016
       MLANA  30 llvvvLaillllgCwyykrrsGYkslrskslkvstlktlvgegeleelakadsklalqe 88 
                 +l++ + + l lg  ++k+r G k+ ++k+  ++ ++t +++++++++  ad k  ++e
  KKY15756.1 586 ILFLSVIASLFLGNVWIKQRGGKKTEEKKKNGMQQQSTAIQKQQQQQS--ADLKPEIDE 642
                 44444444567899999*********9999999999999999888877..444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1419  (0.0791455); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 4727.77
//
Query:       KKY15757.1  [L=798]
Description: putative tissue alpha-l-fucosidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.6e-87  291.8   6.5    1.2e-86  291.3   6.5    1.2  1  Alpha_L_fucos  Alpha-L-fucosidase
  ------ inclusion threshold ------
      0.028   14.6   0.1       0.15   12.2   0.0    2.1  2  GHL6           Hypothetical glycosyl hydrolase 6


Domain annotation for each model (and alignments):
>> Alpha_L_fucos  Alpha-L-fucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.3   6.5   1.4e-90   1.2e-86      13     350 .]     320     685 ..     312     685 .. 0.92

  Alignments for each domain:
  == domain 1  score: 291.3 bits;  conditional E-value: 1.4e-90
                    SSS-SSSSS--SHHHHHHHHH-EEEEE--SGGGTTT..T......-GGGHHHHTT--HH..................HHHGGGGG---TT--HHHH CS
  Alpha_L_fucos  13 kyeptwesldkrklpewFrdaKfGifiHWGlysvpaage......aseWyarnmkeekek...kvvkfhkkkYgeefeYkdlakeFkaekFdpeew 99 
                    +++ + +sl+k++ p+wF+daK GifiHWG+ysvp+ g       ++eW++++  ++ e    +++++  +++g++++Y+d   +++a++Fdp+ew
     KKY15757.1 320 DFTSELDSLAKHESPDWFNDAKYGIFIHWGPYSVPGWGNssphesYAEWFWWYSTHHPEAdasDFYHYRLRTFGPDWNYDDSFANYTASEFDPKEW 415
                    588999******************************666*************9888766678999******************************* PP

                    HHHHHHHT-SEEEEEEE-TT--BSS--TT-S.-BGGG.ST-S-HHHHHHHHHHH..TT-EEEEEEESS-TT-TT--SS--SHHHHHHHH....... CS
  Alpha_L_fucos 100 aklfkaaGakYvvltakHHdgfalwdskvsd.wnsvdagPkrDivkelakavrk..eglkfglyysladwknpdyyedkkkeedrktekkek.... 188
                    ++lf +aGakY+vlt+kHHdgfa++d+ +s+  +s   gP+rDi++el++a++k    l+ g+y+sl++w+npd+ +   ++ d+ ++ + +    
     KKY15757.1 416 VDLFADAGAKYFVLTTKHHDGFANFDTGASTnRSSLYYGPHRDILGELFSAAEKyhPSLRRGTYFSLPEWFNPDFGPYGFAQLDTASS-T-Twpgi 509
                    ***************************9998799999****************96567****************99988877764444.3.24799 PP

                    ....................HH.HHHHHHHHHHHHHHSTTEEEEEES--SHH.HHTTHHHHHHH..HHHHHHHSTT..-EEBGGG-B-TTSSBBEE CS
  Alpha_L_fucos 189 .................kskky.kektlnqlkelvtkYkpdilwfDgewekkeeyynedwkseeelaklykelspgdevlvndrlgkkeaedyqtp 266
                                     + +++  + +++q++ l  +Y++di+w+D +  +       +        + y + +++++v++n+r+g  +a d++tp
     KKY15757.1 510 latnpytnltepytgrvPIDDFiTDLMVPQMEALAYNYSTDIMWCDCGAANG------TASFAA-NWWNYARSQENRQVTINSRCGLAHAADFDTP 598
                    *****************999**9***********************888772......222222.2567777677789****************** PP

                    BSS---T-GGG-EEEEE-SB.S--S--S-G..S-B--HHHHHHHHHHHHHTTEEEEEEE---TTSS--HHHHHHHHHHHHHHHHHGG CS
  Alpha_L_fucos 267 erglpkelkakpWetcttig.ksWgYkrne..eeyksakeliklLvdivskgGnlLLnigptadGsipeeeeerLkeiGkWlkvnge 350
                    e+++ ++ ++++We+ ++++  s+gY+r +    y++a+++i++L+d+vsk+GnlLL+igp+adGsi+++e+++L++ GkW++ + e
     KKY15757.1 599 EYTTFSSAQRRKWESNQGMDpYSYGYNRATpsYAYMNASTIITTLIDMVSKNGNLLLDIGPRADGSIHATEVTNLRKAGKWIHAHEE 685
                    ******************************9999************************************************99876 PP

>> GHL6  Hypothetical glycosyl hydrolase 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.23     2e+03      70      93 ..     324     347 ..     314     369 .. 0.66
   2 ?   12.2   0.0   1.7e-05      0.15       1      57 [.     411     469 ..     411     471 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.23
        GHL6  70 kaderiyeqhpeWaavkenGevii 93 
                  +d+   ++ p+W+   + G +i 
  KKY15757.1 324 ELDSLAKHESPDWFNDAKYGIFIH 347
                 3566667888****9999887753 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 1.7e-05
        GHL6   1 daeelveelkeagadtlvifardaggvvyYrtkldfvtehpkl..krdllkelvkachr 57 
                 d++e v+    aga  +v+ ++ ++g ++++t   +     +   +rd+l+el  a+++
  KKY15757.1 411 DPKEWVDLFADAGAKYFVLTTKHHDGFANFDTGASTNRSSLYYgpHRDILGELFSAAEK 469
                 78999****************************97777777764459******999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.51
# Mc/sec: 4685.42
//
Query:       KKY15758.1  [L=572]
Description: putative glycoside hydrolase subgroup catalytic core [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0014   17.8   0.0     0.0022   17.2   0.0    1.2  1  Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel dom


Domain annotation for each model (and alignments):
>> Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.2e-07    0.0022     103     172 ..     272     345 ..     255     375 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.2e-07
                      SGGGHHHHHHHHHHHHHHHTT-TTEEEEEEEESS....CHHHHHHHHHHHHHHH-TTSEEEEETCSSGGGTSSE CS
  Glyco_hydro_2_C 103 npewlkavldrieelverdkNHpsviiWSlgNEs....gagedikalaelikklDptRlvhyegvaaareldvi 172
                      + +w+ a l  + + v+r + Hps+++W  g E+       +     ++ +++lD   +v    +  + ++++ 
       KKY15758.1 272 DVRWEYANLSIMIDQVTRLRSHPSILLWYTGDEPdgksNPINSTGIAYQTVRSLDLYHPVSLALNCYNFYYEDY 345
                      6799******************************7543222223345889999999999988777555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 4493.05
//
Query:       KKY15759.1  [L=461]
Description: putative argininosuccinate lyase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-47  160.1   0.0      2e-46  158.9   0.0    1.5  1  Lyase_1   Lyase
    3.3e-17   62.8   0.0      8e-17   61.6   0.0    1.7  1  ADSL_C    Adenylosuccinate lyase C-terminus


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.9   0.0   2.2e-50     2e-46       8     306 ..      14     294 ..      11     299 .. 0.87

  Alignments for each domain:
  == domain 1  score: 158.9 bits;  conditional E-value: 2.2e-50
                 CHHHHHHHHHHHHHGGGHHHHHCHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHHHHHHTTHSSGIIIIIT CS
     Lyase_1   8 dklmgiftersrenfrlseedikalaalkkaaakanvdlkeeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnevigellgekvepndkvh 106
                  +++++f+++++ +f+++     ++aal++a  k  v+++e+ + i +al+  + +++     + +         v+     ++    + + e+++++h
  KKY15759.1  14 QEIRNNFSDEAYVKFMIQ-----VEAALARAQSKTKVIPAEAGNVITNALEGFVVDFERL-SRETDIVGYPVFPLVTQ----LVE---NTPAEMAKYIH 99 
                 57899*************.....99***************************99977777.44555555555555555....555...4455******* PP

                 TT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTCEETTTTTTTS CS
     Lyase_1 107 tgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllvellgggtavg 205
                  g++++D+ + a  l++++ l + +  +l +L+++l+  +++++d++++GrThlq+A P t+g ++s y   ++r+ er++e+ kr l+ ++gg++++ 
  KKY15759.1 100 WGATTQDILDNASMLQMRQGL-KIVGRQLAELTTVLSHLSEKYRDTPMAGRTHLQHALPCTFGYKCSVYLSSITRHAERIREIEKRCLLVQFGGAAGTL 197
                 *********************.669*********************************************************************88888 PP

                 STTTSCCTHHHHHHHHHH.HHHCSTEESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSSC-TTSTTTEBTHHHHHH CS
     Lyase_1 206 tglnadpefaelvakela.kvtglpvkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssgeaglvelslaesepGSSiMPgKvNPvqlEll 303
                 + l+    +  +v+++l+ ++++   + p+ +     rD+++e+l  l+l+  sL k+a D++++ss e+++v + +      SS+MP+K+NP+++E++
  KKY15759.1 198 ASLGPTD-VGLRVRAQLGeELEL---TDPPVT-WHVVRDNIAEILNFLALVGGSLGKIAYDIIVMSSNELSEVSEPFVPHRGASSTMPQKRNPISSEVI 291
                 8887544.478899999922223...334333.44789*******************************99999999999989***************8 PP

                 HHH CS
     Lyase_1 304 tgv 306
                   +
  KKY15759.1 292 LAA 294
                 765 PP

>> ADSL_C  Adenylosuccinate lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.0   8.9e-21     8e-17       1      73 []     364     441 ..     364     441 .. 0.96

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 8.9e-21
                 TGGGHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHC...HHHHHHT-HHHH.C.HHCHHHHHT-GGGCCTTHHHHHHHH CS
      ADSL_C   1 GlifservllaLvkglgReeAyelVqeaamkawee...llelLaadpevk.k.seeeldalfdpayylgsadeivdrv 73 
                 Gli+ e+v++ L++ lgR++A+++V+ea++++ e+   l+e+L+    +  + + ++l++l+dp +ylg++  +vd+v
  KKY15759.1 364 GLIVGEAVMMGLAPFLGRQQAHDIVYEACKESIESgqaLFEVLKGKRNIVdQiALDDLEKLCDPCNYLGASHLMVDQV 441
                 9********************************99*********9999996698889******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3405.77
//
Query:       KKY15760.1  [L=729]
Description: putative glutaminase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-62  210.9   0.1      1e-62  210.9   0.1    1.7  2  DUF4965   Domain of unknown function (DUF4965)
    2.6e-58  197.5  13.0    4.3e-58  196.8  13.0    1.3  1  DUF5127   Domain of unknown function (DUF5127)
    6.5e-39  134.1   3.0    6.5e-39  134.1   3.0    2.3  3  DUF1793   Domain of unknown function (DUF1793)
    2.4e-08   33.4   0.0    7.1e-08   31.9   0.0    1.8  1  DUF4964   Domain of unknown function (DUF4964)


Domain annotation for each model (and alignments):
>> DUF4965  Domain of unknown function (DUF4965)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.9   0.1   2.3e-66     1e-62       2     174 .]     375     551 ..     374     551 .. 0.98
   2 ?   -3.7   0.2       1.8   8.2e+03      49      76 ..     601     631 ..     591     638 .. 0.59

  Alignments for each domain:
  == domain 1  score: 210.9 bits;  conditional E-value: 2.3e-66
     DUF4965   2 ggekYadllalsvRqafaalelv...skdetsevllflKeissngnvntvDviypalPlflylnpellkllLeplleyqesgkypkkfaahDlGtsYPn 97 
                 +g++Ya++l+lsvRq+f++++l+   ++ +t+e+++f+Keissngn+ntvD+i+  +P+f ++n e+lkllL+p++ y e +++++++++hD+G+ YPn
  KKY15760.1 375 AGSNYAAILELSVRQTFGGIDLTipgDTLNTDEAYAFIKEISSNGNTNTVDIIVELIPFFAIFNIEWLKLLLDPVVAYLEGDEWTYDWCIHDIGSAYPN 473
                 699********************9977************************************************************************ PP

     DUF4965  98 atgqnd.gedeqmpveesGnmlimalayaqasgdasllekyydllkqWadYLvengldpanqlstddfagalanqtnL 174
                 atg+ +  ++eqmpveesGn+lima+ y+++sgd+s+++++ +l+  +adYL++ngl+p+nqlst+d  g+++n t+L
  KKY15760.1 474 ATGHPNnDDAEQMPVEESGNILIMAAIYQEVSGDTSWATSHESLFAGYADYLIDNGLYPTNQLSTNDGLGSFTNMTQL 551
                 ****9945789****************************************************************997 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.8
     DUF4965  49 DviypalPlflyln...pellkllLeplley 76 
                  ++y+++  f+++n   +++l+l L p   y
  KKY15760.1 601 TLTYQSSTWFMLFNlypAKYLNLTLFPEAAY 631
                 5566666666655533367777777666665 PP

>> DUF5127  Domain of unknown function (DUF5127)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.8  13.0   9.5e-62   4.3e-58       1     226 [.     149     369 ..     149     370 .. 0.96

  Alignments for each domain:
  == domain 1  score: 196.8 bits;  conditional E-value: 9.5e-62
     DUF5127   1 tqtiftftaggkveltvtFlSPvlpddldrqSlpfsYltvevkstdgkshsVqvYsdisaewasgdesqevewstttgglayhkvgrqnqevlsek.nd 98 
                 t++ift+tag+ +++t++++SPv+ d+++rqSlpfsYltv++  +dg++ +VqvYsdi+++w++++ s+++++s  +g+ ++++++    +++s++  +
  KKY15760.1 149 THSIFTLTAGN-ANITLDYFSPVSFDNYVRQSLPFSYLTVSAVGLDGNTPDVQVYSDIDGTWTGDEASTSTSFSI-SGTASIFELSVPGAATYSQSsYE 245
                 9*********6.*************************************************************99.599****************989* PP

     DUF5127  99 radwGyaylatka.kss.ltyqsgedtevrkqFvkngklantkdtnfraisddwpvfalahdlgsvssesksvvfaiGyvrdpaiqylgqnlrpyWrsk 195
                 +a wG+a++++++ ++s lt+qsg++++vr+qFv+ng+l   ++ ++     +  v +lahd+g+vss+ +s++faiG+vr+ a++ylg++++ y+r+ 
  KKY15760.1 246 HALWGTAVWSSESsDNStLTTQSGASSTVRSQFVSNGSL-AGTHATW----ASGDVAGLAHDFGTVSST-TSATFAIGVVREDAVNYLGTAYTHYYRAT 338
                 ***********9986667*********************.5566778....899************996.89*************************** PP

     DUF5127 196 yssiedalsaflkdyaaalkrsealDkkira 226
                 ys+i++ +++f++dy+aa ++ ++lD+++++
  KKY15760.1 339 YSDIASTVTHFFDDYSAAASEGSDLDSTVST 369
                 ***************************9975 PP

>> DUF1793  Domain of unknown function (DUF1793)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.8   7.9e+03      22      34 ..     339     351 ..     316     382 .. 0.56
   2 ?   -2.1   0.1         1   4.7e+03      48      72 ..     509     533 ..     499     539 .. 0.84
   3 !  134.1   3.0   1.4e-42   6.5e-39       2     164 ..     552     723 ..     551     725 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.8
     DUF1793  22 ysaiaeeyikkwe 34 
                 ys+ia+++ +  +
  KKY15760.1 339 YSDIASTVTHFFD 351
                 3333333322222 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1
     DUF1793  48 dkedswsllYnlyaDkllglnlvpq 72 
                  +++s+  l+  yaD l++ +l p 
  KKY15760.1 509 SWATSHESLFAGYADYLIDNGLYPT 533
                 58899999********999888776 PP

  == domain 3  score: 134.1 bits;  conditional E-value: 1.4e-42
     DUF1793   2 GikAmseiaellgeeedakkysaiaeeyikkweelai........dgthlklaYdkedswsllYnlyaDkllglnlvpqsvyemqsafYktvaqkyGlp 92 
                 G+kA   + ++ g  + +++y++ +++++++  + ++        ++t ++l+Y++ ++w +l+nly+ k l+l+l+p+  y+ qsa Y+tva +yG+p
  KKY15760.1 552 GVKAAVAL-SAYGLITGNETYTNYGDSFADTIYTDGVgvrissttNQTYFTLTYQS-STWFMLFNLYPAKYLNLTLFPEAAYTGQSALYATVAGEYGIP 648
                 66666666.344444445678888888888854444433666443448******98.9***************************************** PP

     DUF1793  93 lDsrhtytksdWelfaaavaskktreelissvakwvnetktdrpftdlYdtegtgglpg.....frarpvvGGhFal 164
                 l+ + +++k+dW+++ aavas+++r+++i++++++++++ +d pf d+Y++  tg+ +g     frarpv+G+hFa 
  KKY15760.1 649 LEGEVEWGKTDWQMWSAAVASTEVRTQMIDDLYSYMSNGLNDDPFADRYWA--TGDEAGlgansFRARPVLGAHFAP 723
                 **************************************************6..34444455799***********96 PP

>> DUF4964  Domain of unknown function (DUF4964)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   1.6e-11   7.1e-08      23      78 ..      70     129 ..      51     136 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 1.6e-11
     DUF4964  23 eLRaPayPLvtidpylsiWsftde....LndesvkhwtgkdlpllgvlrVDGkvYrfmGk 78 
                  +  P+yPL + +pyls+W +  +     + +  ++w+g++l   +++rVDG+ Y ++G 
  KKY15760.1  70 PFLPPSYPLAVRNPYLSAWLPGPQassdFTSTVPQFWSGDNLTWSVIARVDGTAYNLVGV 129
                 5567***************8765511115556669***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 5099.85
//
Query:       KKY15761.1  [L=1452]
Description: putative m protein repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-05   23.3  35.2    4.4e-05   23.3  35.2    8.1  6  FAM184        Family with sequence similarity 184, A and B
    0.00036   20.8  29.6    0.00036   20.8  29.6   11.4 11  ATG16         Autophagy protein 16 (ATG16)
     0.0099   16.3   4.5     0.0099   16.3   4.5   14.3 13  Spectrin      Spectrin repeat
  ------ inclusion threshold ------
       0.14   12.6   4.2        2.3    8.7   0.3    4.3  2  AHSP          Alpha-haemoglobin stabilising protein
        3.8    8.2   7.3        2.9    8.6   0.2    4.3  3  YbjQ_1        Putative heavy-metal-binding


Domain annotation for each model (and alignments):
>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1  28.4      0.38   1.4e+03      63     190 ..     347     478 ..     304     491 .. 0.69
   2 ?  -12.8  44.1         5   1.8e+04      18     182 ..     408     568 ..     407     649 .. 0.61
   3 !   23.3  35.2   1.2e-08   4.4e-05      10     206 ..     655     847 ..     653     852 .. 0.92
   4 !    8.6  39.4   0.00041       1.5      10     204 ..     866    1064 ..     861    1072 .. 0.74
   5 ?   -5.7  15.8         5   1.8e+04      37     182 ..    1086    1176 ..    1060    1180 .. 0.45
   6 ?    2.9  28.7     0.022        78      20     175 ..    1164    1322 ..    1156    1330 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.38
      FAM184  63 eqhekekrqalaefeqykrrveerelkleaehsqkvvelsreveevkrkFeeklrqfaqlqeqleqekekaLeelrkkhreeveeLlkeqeaqsekllk 161
                 e+ ++  + a ae+ + k + +e+++  e+  ++ ++ l++ + +  +  ee   + +q+  ++ +e +  +++l ++h +e+  L+++ ++ +   ++
  KKY15761.1 347 ETAASASNDANAEVASLKTQLDESNVRIES-LQKELLDLQTKLTDFSKSAEEEAAKVQQATVAIREEHSMKIDQLTAAHLQEIAALKQKLQDAECAQQE 444
                 445556677888888888888888887765.6778999999999999999999999999999999*******************999988776554444 PP

      FAM184 162 eqekleekhkaeveklkeev.........eelekekkk 190
                 ++e+++    +++e++++ +         e+lek+k+ 
  KKY15761.1 445 QAEQAT----KDLEEARQVAeaagdskvvESLEKQKQA 478
                 444442....2333333332000011112555555543 PP

  == domain 2  score: -12.8 bits;  conditional E-value: 5
      FAM184  18 alkeaHeeeiqqilaetrekilqykskveeeldlkqkiaeleesleqhekekrqalaefeqykrrveerelkleaehsqkvvelsreveevkrkFeekl 116
                 a++e H   i+q++a   + i ++k+k++ +++  q+ +++e++ ++ e+ ++  +ae+    + ve    k++++ ++ +++ ++e+++ k+   + +
  KKY15761.1 408 AIREEHSMKIDQLTAAHLQEIAALKQKLQ-DAECAQQ-EQAEQATKDLEEARQ--VAEAAGDSKVVESL-EKQKQAQEEAIAAVEKELLAEKESSSATI 501
                 57888888888888888888888888854.4444433.334555555555554..34443334444444.44555557788888888888888888888 PP

      FAM184 117 rqfaqlqeqleqekeka...LeelrkkhreeveeLlkeqeaqsekllkeqekleekhkaeveklkeeve 182
                 +q++++q+ql +ek+k      +l +k ++eve  ++e  ++ ++l+ + + + + +++e+ +l+++ e
  KKY15761.1 502 SQLKEIQAQLVEEKSKLesaKRSLAEK-EKEVEMHQNELASRDRELTGQGA-VIKSLQDEIGALQQSKE 568
                 888888888887776532224444444.66666555555544444444333.33344444444444332 PP

  == domain 3  score: 23.3 bits;  conditional E-value: 1.2e-08
      FAM184  10 deheaeiqalkeaHeeeiqqilaetrekilqy.kskveeeldlkqkiaeleesleqhekekrqalaefeqykrrveerelkleaehsqkvvelsrevee 107
                  eh++ i a+k  H+  i+ + +e ++ i ++ k + +  ld++++i++l +  e  +++ ++a + +e  + ++ ++  + +a+hs+ v++l++e+ e
  KKY15761.1 655 QEHDQIIAAIKSDHAKAIESLNEEHSNVIDKLaKDAHSTRLDHEEQIQALRSDHEASKANLERAQTAIEDAQIESSKNLDSINASHSDEVAALKAELSE 753
                 59***************************999345667889********************************************************** PP

      FAM184 108 vkrkFeeklrqfaqlqeqleqekekaLeelrkkhreeveeLlkeqeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyEeklakqkafy 206
                  +r+  e+ r++++ ++ +e+  ++ ++el++k    v+ L+ ++ ++++ l++ q+ le + + +ve+ k+ +e+le+e k   e++ ++l+++ + +
  KKY15761.1 754 SQRALAEAERSIEESKNFAEESTKRTIKELEEK----VDALNAQSAKNTSALKSAQSDLE-AAQSQVESFKQIIESLEQESKGKDEDQTKALHEAREEA 847
                 ******************************999....****9999888888888888886.67889***************999999999888877655 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.00041
      FAM184   10 deheaeiqalkeaHeeeiqqilaetrekilqykskveeeldlkqkiaeleesleqhekekrqalaefeqykrrve..erelkleaehsqkvvelsre 104 
                  deh a+  +lke+H+  ++ + +e +ek  +  s+      lk +  ele s ++  +  ++ l e ++ k++++  e+     + h++   e+ + 
  KKY15761.1  866 DEHAAAFAELKEQHTGALESLRSELEEKHAATMSQ------LKSRHDELETSHRDLRASHERELEELST-KHQAAlkESADMIASIHETHFSEFTQA 955 
                  9***************************9999999......8888888888888888888888888844.444430033344567788889999999 PP

      FAM184  105 veevkrkFeeklrqfaql....qeqleqekekaLeelrkkhreeveeLlkeqeaq....sekllkeqekleekhkaeveklkeeveelekekkklve 193 
                   +++ ++ ++kl++++++    ++++e+  ++aL  l+++h + +++L+ke e+     s+ + +e++k+   ++ae++++k  +e++++e k  ++
  KKY15761.1  956 TKAASEENDAKLKSLEDAfaqkAKEVEESAQTALTGLQEQHDKALSDLRKELEESassrSAAADAEHSKALADVEAELARYKSLLETVREESKAAAA 1052
                  999999999999886655100055555666777*************999987765111134455677788889999999999999999998776654 PP

      FAM184  194 .eyEeklakqka 204 
                    ++++++++++
  KKY15761.1 1053 sANNDQIEALQV 1064
                  145666666655 PP

  == domain 5  score: -5.7 bits;  conditional E-value: 5
      FAM184   37 kilqykskveeeldlkqkiaeleesleqhekekrqalaefeqykrrveerelkleaehsqkvvelsreveevkrkFeeklrqfaqlqeqle...... 127 
                  ki+ + skv+ +++   k+ +++e++                                                                +      
  KKY15761.1 1086 KIKDLESKVAIDQETIAKLTAAAEEA----------------------------------------------------------------Nkmmasq 1118
                  33333333333333333333333333................................................................2333333 PP

      FAM184  128 ....qekekaLeelrkkhreeveeLlkeqeaqsekllkeqekleekhkaeveklkeeve 182 
                       + +  L+el+kk++e v +   e  + +ek  +eq+ +++ h+a v++++e+++
  KKY15761.1 1119 gkdsDDVQIQLDELNKKYQEAVRSHASEL-TIYEKKINEQSVVQSDHEATVKAANERAQ 1176
                  32223333336666666655555544333.33444445666666666666666665554 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.022
      FAM184   20 keaHeeeiqqilaetrekilqykskveeeldlkqkiaeleesleqhekekrqalaefeqykrrveerelkleaehsqkvvelsreveevkrkFeekl 116 
                   ea     ++  +e+++ + + +s + +   lk +++++  ++e+h+++ +  l+e e  k+ + e e ++++e s++v+e+++ +  ++++ e  +
  KKY15761.1 1164 HEATVKAANERAQEAEDALANAQSSLRDLVRLKDQLSSATREVETHKSNHKAVLKELEDLKKAA-ELEGASKTEISAQVTEIEKTLTSAQQQNELMS 1259
                  444444445557899999999999999999****************************999875.5678899************************* PP

      FAM184  117 rqfaqlqeqle..qekekaLeelrkkhreeveeLlkeqeaqsekllkeqekl..eekhkaeve 175 
                  +q++  ++++e   ek kaLe   ++  +e+   +++ e+  +k ++ +  l  ++k  aev+
  KKY15761.1 1260 KQLEASAQAAEvsVEKIKALEMQLETTLQELAATKDAAEKSAAKTNDLERSLaaSQKESAEVK 1322
                  ****99999887789999998776665666665555555554444443333323445555554 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -9.2   9.9         5   1.8e+04      56      76 ..      29      52 ..       2     132 .. 0.60
   2 ?   -2.7   1.0       1.6   5.9e+03      79      79 ..     173     173 ..     120     220 .. 0.53
   3 ?    0.2  28.2      0.21   7.7e+02      27     176 ..     300     455 ..     266     461 .. 0.70
   4 !   20.8  29.6     1e-07   0.00036      31     164 ..     428     564 ..     422     569 .. 0.78
   5 ?    3.5  19.4     0.021        74      20     177 ..     571     725 ..     564     731 .. 0.75
   6 ?    0.6  31.4      0.16   5.7e+02      23     166 ..     690     828 ..     667     842 .. 0.63
   7 ?   -0.7  30.9      0.41   1.5e+03      28     157 ..     795     931 ..     792     938 .. 0.73
   8 ?   -8.5  32.1         5   1.8e+04       4     168 ..     899    1067 ..     894    1075 .. 0.56
   9 ?    2.9  19.1      0.03   1.1e+02      37     176 ..    1021    1156 ..    1013    1159 .. 0.72
  10 ?   -9.5  35.2         5   1.8e+04       8     161 ..    1170    1319 ..    1154    1327 .. 0.62
  11 ?   -3.0   0.0       2.1   7.4e+03     160     185 ..    1397    1422 ..    1367    1423 .. 0.74

  Alignments for each domain:
  == domain 1  score: -9.2 bits;  conditional E-value: 5
       ATG16 56 ksakekeasasq..........snskqsaki 76
                 ++k+++as+++          +       +
  KKY15761.1 29 PDTKKSPASKASvapkrptastT-------T 52
                33333333333333322211211.......1 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.6
       ATG16  79 l 79 
                 +
  KKY15761.1 173 T 173
                 1 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.21
       ATG16  27 Lldrtsaleaenaklekaaasaks......sksskksakekeasasq..snskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleek 117
                 L  ++++ ++  +kl+ + +++k+      +   ++ a e ++++ +   +++ ++ +++ ++++a+l+++l e+  + + l++ ll+l+++l +  ++
  KKY15761.1 300 LYLKSEQIDHTMSKLKGELEKTKTpedgvpQ---ESIAAEAATET-ErgLAETAASASNDANAEVASLKTQLDESNVRIESLQKELLDLQTKLTDFSKS 394
                 5556666677777777666666665643321...22222222222.22344555667778889999********************************9 PP

       ATG16 118 lkedeerlaele.aeraaletklkdre.eelrekeklvqdlqDElsaLqlqlnqaEeklrk 176
                 ++e+++++++++ a r++ + k+++++ ++l+e ++l q+lqD+  a q q++qa + l++
  KKY15761.1 395 AEEEAAKVQQATvAIREEHSMKIDQLTaAHLQEIAALKQKLQDAECAQQEQAEQATKDLEE 455
                 99999999998835566788888887526899**********9999999888887766655 PP

  == domain 4  score: 20.8 bits;  conditional E-value: 1e-07
       ATG16  31 tsaleaenaklekaaasaks.sksskksakekeasasq.........snskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklk 119
                 ++al+++ + +       +  ++ ++++a++++++a+q           ++ +++ q++e+++a++ +el +   s + + ++l+e +++l + ++kl+
  KKY15761.1 428 IAALKQKLQDA-------ECaQQEQAEQATKDLEEARQvaeaagdskVVESLEKQKQAQEEAIAAVEKELLAEKESSSATISQLKEIQAQLVEEKSKLE 519
                 33333333333.......2222233334444444444455556666556667788999***************************************** PP

       ATG16 120 edeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLq 164
                 + +++lae e+e++  + +l++r+ el ++ ++++ lqDE+ aLq
  KKY15761.1 520 SAKRSLAEKEKEVEMHQNELASRDRELTGQGAVIKSLQDEIGALQ 564
                 *******************************************99 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.021
       ATG16  20 liqaynrLldrtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksr.gelaqrllelneelqkleek 117
                 l +a  +  +++++l+ + ++l ++  +++  ++ k+ a ++ea      s++++++  l q++ +l++e ++++ ++ +el  rll+  +e+++  + 
  KKY15761.1 571 LADAGVKASKQVAELKVKIEELTEELDKSTG-AAGKAGAVHQEA-----LSAKDEEVRGLGQAIEKLQQEIQDVHEAKsTELDGRLLSIRQEHDQIIAA 663
                 4444455556666666666666555555444.222222233333.....355689********************9872589***************** PP

       ATG16 118 lked.eerlaeleaeraaletklkdreeelr.ekeklvqdlqDElsaLqlqlnqaEeklrkl 177
                 +k+d ++++++l++e++++ +kl++ ++  r + e+ +q+l+ +++a +  l+ a  + ++ 
  KKY15761.1 664 IKSDhAKAIESLNEEHSNVIDKLAKDAHSTRlDHEEQIQALRSDHEASKANLERAQTAIEDA 725
                 **9835789**************9999888757899***********999999887776655 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.16
       ATG16  23 aynrLldrtsaleaenaklekaaasakssksskksakekeasasq.......snskqsaki.qsleqklaqlreelaelyksrgelaqrllelne.elq 112
                 a++  ld  ++ +a ++ +e++ a+ +              +a++       ++sk+ ++i +s ++++a+l++el+e++++ +e + ++ e ++ + +
  KKY15761.1 690 AHSTRLDHEEQIQALRSDHEASKANLE--------------RAQTaiedaqiESSKNLDSInASHSDEVAALKAELSESQRALAEAERSIEESKNfAEE 774
                 222223333333333333322211111..............111122234454556666651567899**********************987661555 PP

       ATG16 113 kleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlq 166
                   ++++ke ee++++l+a+ a+ + +lk+ +  l+  +  v+ ++  +++L+ +
  KKY15761.1 775 STKRTIKELEEKVDALNAQSAKNTSALKSAQSDLEAAQSQVESFKQIIESLEQE 828
                 567789999*******************************99999877777655 PP

  == domain 7  score: -0.7 bits;  conditional E-value: 0.41
       ATG16  28 ldrtsaleaenaklekaaasaks.sksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelnee....lqkleeklked 121
                 +++tsal++ ++ le+a ++++s ++  ++ ++e++ + ++++++ ++  ++ + +l++l ee + + k++ e+a    el+e+    l+ l+++l+e+
  KKY15761.1 795 AKNTSALKSAQSDLEAAQSQVESfKQIIESLEQESKGKDEDQTKALHEAREEAARALQKLEEESTSVKKAQDEHAAAFAELKEQhtgaLESLRSELEEK 893
                 789***********9999999999555444444444444445666788888999999999999999999999999999999886333367788888776 PP

       ATG16 122 .eerlaeleaeraaletklkdree.elrekeklvqdlq 157
                  ++++ +l++++ +let  +d+++ + re+e+l  + q
  KKY15761.1 894 hAATMSQLKSRHDELETSHRDLRAsHERELEELSTKHQ 931
                 25678999999999999998865414455555554444 PP

  == domain 8  score: -8.5 bits;  conditional E-value: 5
       ATG16    4 aqLreRdarqekafaeliqaynrLldrtsaleaenaklekaaasaks...sksskksakekeasasqsnskqsakiqsleqklaqlreelaelyks. 96  
                  +qL+ R  + e+++++l + + r l+  s+ ++ + k   +a    s   + + +   ++ ++ a   +++++ak++sle++ aq  +e++e+ ++ 
  KKY15761.1  899 SQLKSRHDELETSHRDLRASHERELEELSTKHQAALKE--SADMIASiheT-HFS-EFTQATKAA---SEENDAKLKSLEDAFAQKAKEVEESAQTa 988 
                  57777777778888888888888777766654443333..33333334322.222.122222222...23568999999999999988888876653 PP

       ATG16   97 ....rgelaqrllelneelqklee.klkedeerlaeleaeraaletklkdreeelrekeklvq..dlqDElsaLqlqln 168 
                      ++++ + l +l +el++  + ++ + ++++ ++ a+++a   ++k++ e++re  k+    +  D ++aLq+q+ 
  KKY15761.1  989 ltglQEQHDKALSDLRKELEESASsRSAAADAEHSKALADVEAELARYKSLLETVREESKAAAasANNDQIEALQVQVA 1067
                  3333566666666666666665442444555556666666666666666666666665554442255666666666665 PP

  == domain 9  score: 2.9 bits;  conditional E-value: 0.03
       ATG16   37 enaklekaaasaks.....sksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlael 128 
                  e++k+    a++++     ++  +++++e++a a   +s+++++i++l+ ++a  +ee+a+     ++ ++++++l+++++ ++e++ + +++ +e+
  KKY15761.1 1021 EHSKA---LADVEAelaryKSLLETVREESKAAA---ASANNDQIEALQVQVAVEKEEVAKFREIAETASTKIKDLESKVAIDQETIAKLTAAAEEA 1111
                  33333...23333333244334444444444444...45899******************************************9999888766665 PP

       ATG16  129 eaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklrk 176 
                  +   + +  + kd ++   ++++l+++ q+++ ++  +l+  E+k ++
  KKY15761.1 1112 N---KMMASQGKDSDDVQIQLDELNKKYQEAVRSHASELTIYEKKINE 1156
                  5...55666777777888888888889999999999999999998765 PP

  == domain 10  score: -9.5 bits;  conditional E-value: 5
       ATG16    8 eRdarqekafaeliqaynrLldrtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrl 104 
                  + ++r ++a  +l +a + L d +++ ++ +++  ++ ++ ks+ +   ++ e++++a++    + a+ ++ +++++++ + l+ ++++++ ++++l
  KKY15761.1 1170 AANERAQEAEDALANAQSSLRDLVRLKDQLSSAT-REVETHKSNHKAVLKELEDLKKAAE---LEGASKTEISAQVTEIEKTLTSAQQQNELMSKQL 1262
                  4555556666666666666666665555555555.3333333322222233344444333...5666777777777777777777777777777777 PP

       ATG16  105 lelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDEls 161 
                   +  ++ ++  ek+k+ e +l+   +e aa +++ ++ +++ +++e+ + + q E +
  KKY15761.1 1263 EASAQAAEVSVEKIKALEMQLETTLQELAATKDAAEKSAAKTNDLERSLAASQKESA 1319
                  777777777777777777777777777777777777777777777777777666654 PP

  == domain 11  score: -3.0 bits;  conditional E-value: 2.1
       ATG16  160 lsaLqlqlnqaEeklrklekENkeLv 185 
                  +++ + q  q+++ ++   ++N+ Lv
  KKY15761.1 1397 MASIREQIRQLDDHNEAALQDNARLV 1422
                  45556666666777777777777776 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   3.5    0.0042        15       8     103 ..     286     381 ..     280     390 .. 0.82
   2 ?   -4.7  11.7         5   1.8e+04      49      89 ..     416     457 ..     362     463 .. 0.72
   3 ?   -5.1  11.5         5   1.8e+04       8      76 ..     444     509 ..     442     521 .. 0.64
   4 ?    0.1   9.9      0.31   1.1e+03       3      95 ..     504     599 ..     502     606 .. 0.72
   5 ?    2.0   1.7     0.079   2.8e+02      47      98 ..     611     666 ..     600     670 .. 0.70
   6 !    5.0   7.9    0.0096        34      12      94 ..     678     760 ..     672     762 .. 0.84
   7 !    5.8   3.5    0.0053        19      50     103 ..     747     801 ..     739     803 .. 0.77
   8 ?   -0.3  15.6      0.41   1.5e+03      19     104 ..     820     909 ..     804     910 .. 0.83
   9 ?   -4.1  10.2         5   1.8e+04      25      90 ..     911     975 ..     891     994 .. 0.49
  10 ?   -2.9   6.0       2.6   9.3e+03      35      77 ..    1018    1061 ..     972    1075 .. 0.58
  11 !   16.3   4.5   2.8e-06    0.0099      26      91 ..    1070    1138 ..    1063    1144 .. 0.89
  12 ?    0.0   5.8      0.33   1.2e+03      28      95 ..    1160    1226 ..    1144    1233 .. 0.65
  13 ?    3.0   9.2     0.039   1.4e+02      20      84 ..    1235    1306 ..    1229    1324 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0042
                 HHHHHHHHHHHHHHHHHCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin   8 qdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLkelaaerkqkL 103
                 q a + e+  +e+  +l+se++ +++++++  l+k k+ e+ ++++    +a +e+++ l++   sas + ++ ++ l ++ +e   ++++ +++L
  KKY15761.1 286 QAAMAAEDAGDETGLYLKSEQIDHTMSKLKGELEKTKTPEDGVPQESIAAEAATETERGLAETAASASNDANAEVASLKTQLDESNVRIESLQKEL 381
                 5666666667889999********************************************888888888888888888777666555555555544 PP

  == domain 2  score: -4.7 bits;  conditional E-value: 5
                 HHHH.HHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHH CS
    Spectrin  49 elaa.qqervkalnelaeklldeghsaseeieerleelnerW 89 
                  +++    +++++ +l++kl+d+++ ++e+ e+ +++l+e+ 
  KKY15761.1 416 KIDQlTAAHLQEIAALKQKLQDAECAQQEQAEQATKDLEEAR 457
                 344444567788889999999999999999999999999876 PP

  == domain 3  score: -5.1 bits;  conditional E-value: 5
                 HHHHHHHHHHHHHHHHHCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHH CS
    Spectrin   8 qdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsase 76 
                 ++a++ ++ +ee+++ +   + + d   v++l+k+ +a e+ +aa ++++ a +e +++ ++  ++ ++
  KKY15761.1 444 EQAEQATKDLEEARQVA---EAAGDSKVVESLEKQKQAQEEAIAAVEKELLAEKESSSATISQLKEIQA 509
                 67777888888888888...6777888888888888888888888777766666655555443333333 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.31
                 HHHHHHHHHHHHHHHHHHHHHHCCSSC..SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin   3 lqqfaqdadeleeWieekeellssedl..gkdleevqallkkhkaleaelaaqqervkaln.elaeklldeghsaseeieerleelnerWeeLkel 95 
                 l +++ ++ e ++ +e +++ l+++++  + + +e+ +  +++++  a +++ q+++ al+   +++l+d+g +as+++ e   +++e  eeL + 
  KKY15761.1 504 LKEIQAQLVEEKSKLESAKRSLAEKEKevEMHQNELASRDRELTGQGAVIKSLQDEIGALQqSKESELADAGVKASKQVAELKVKIEELTEELDKS 599
                 667778888888888888888855555113333444444447888888888888888888855555679999999999999999999999999875 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.079
                 HHHHHHHHHHHHHHH....HHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  47 eaelaaqqervkaln....elaeklldeghsaseeieerleelnerWeeLkelaae 98 
                 ++ l+a++e+v+ l     +l+++++d ++ +s e+  rl  +++  +++ +++++
  KKY15761.1 611 QEALSAKDEEVRGLGqaieKLQQEIQDVHEAKSTELDGRLLSIRQEHDQIIAAIKS 666
                 55556666666555433337777777777888888888888888888888877776 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.0096
                 HHHHHHHHHHHHHCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  12 eleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkaln.elaeklldeghsaseeieerleelnerWeeLke 94 
                 e  + i++  +++ s++l  + e++qal  +h+a +a+l+ +q+ +++ + e +++l + + s s+e+ +  +el e  ++L e
  KKY15761.1 678 EHSNVIDKLAKDAHSTRL-DHEEQIQALRSDHEASKANLERAQTAIEDAQiESSKNLDSINASHSDEVAALKAELSESQRALAE 760
                 556677777777877777.899****************************9999999888889999999999999887666655 PP

  == domain 7  score: 5.8 bits;  conditional E-value: 0.0053
                 HHH.HHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  50 laa.qqervkalnelaeklldeghsaseeieerleelnerWeeLkelaaerkqkL 103
                 l+a   e  +al e ++++++++ +a+e ++ +++el+e+ ++L ++ a+   +L
  KKY15761.1 747 LKAeLSESQRALAEAERSIEESKNFAEESTKRTIKELEEKVDALNAQSAKNTSAL 801
                 44434555566778888889999*********************99999887777 PP

  == domain 8  score: -0.3 bits;  conditional E-value: 0.41
                 HHHHHHCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  19 ekeellssedlgkdleevqallkkhkaleaelaaqqervkaln....elaeklldeghsaseeieerleelnerWeeLkelaaerkqkLe 104
                 ++ e l++e +gkd ++++al+++ ++  + l+  +e+ ++++    e a ++++ +++ + ++e+  +el+e+ ++  +++++r+++Le
  KKY15761.1 820 QIIESLEQESKGKDEDQTKALHEAREEAARALQKLEEESTSVKkaqdEHAAAFAELKEQHTGALESLRSELEEKHAATMSQLKSRHDELE 909
                 56677888889************9999999999888887777766677778889999999999999999999999999999999999987 PP

  == domain 9  score: -4.1 bits;  conditional E-value: 5
                 CCSSC.SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHTTHTTHHHHHHHHHHHHHHHH CS
    Spectrin  25 ssedl.gkdleevqallkkhkaleaelaaqqervkaln..elaeklldeghsaseeieerleelnerWe 90 
                 s +dl +++  e+++l +kh+a  +e a++   + +    e    ++++ + asee  ++l+ l+++++
  KKY15761.1 911 SHRDLrASHERELEELSTKHQAALKESADMIASIHETHfsE----FTQATKAASEENDAKLKSLEDAFA 975
                 23444455666666666666655555444444443333222....233334444555555555555444 PP

  == domain 10  score: -2.9 bits;  conditional E-value: 2.6
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHTTHTTHHH CS
    Spectrin   35 evqallkkhkaleaelaaqqervkalnelaekl.ldeghsasee 77  
                  +  ++ k++ ++eaela ++  ++++ e +++  ++++ ++ e+
  KKY15761.1 1018 ADAEHSKALADVEAELARYKSLLETVREESKAAaASANNDQIEA 1061
                  22333347778888888888888888877777744443333333 PP

  == domain 11  score: 16.3 bits;  conditional E-value: 2.8e-06
                  CSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHTTHTTHHHHHHHHHHHHHHHHH CS
    Spectrin   26 sedlgkdleevqallkkhkaleaelaaqqervkaln...elaeklldeghsaseeieerleelnerWee 91  
                  +e+++k  e +++  +k k+le  +a  qe + +l+   e a+k++++++++s++++ +l+eln++++e
  KKY15761.1 1070 KEEVAKFREIAETASTKIKDLESKVAIDQETIAKLTaaaEEANKMMASQGKDSDDVQIQLDELNKKYQE 1138
                  5555666677788889**********************9***************************986 PP

  == domain 12  score: 0.0 bits;  conditional E-value: 0.33
                  SCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin   28 dlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLkel 95  
                    + + ++v+a  ++ ++ e+ la++q  +++l  l+++l ++   + e  ++  +++ +  e+Lk++
  KKY15761.1 1160 VQSDHEATVKAANERAQEAEDALANAQSSLRDLVRLKDQLSSA-TREVETHKSNHKAVLKELEDLKKA 1226
                  4466778888888889999999999999999999888888544.344444444444455555555554 PP

  == domain 13  score: 3.0 bits;  conditional E-value: 0.039
                  HHHHHCCSSCSSSHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHH.HHTT.....HTTHHHHHHHHHH CS
    Spectrin   20 keellssedlgkdleevqallk.khkaleaelaaqqervkalnelaekl.ldeg.....hsaseeieerlee 84  
                  +e  ++ ++++k+l+++q++ +   k+lea  +a++  v+++++l+ +l ++ +     ++a+e+  +++++
  KKY15761.1 1235 TEISAQVTEIEKTLTSAQQQNElMSKQLEASAQAAEVSVEKIKALEMQLeTTLQelaatKDAAEKSAAKTND 1306
                  555666688999**********999******************99999966665444444444555555555 PP

>> AHSP  Alpha-haemoglobin stabilising protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.4      0.11   3.9e+02      51      70 ..     828     847 ..     815     868 .. 0.68
   2 ?    8.7   0.3   0.00064       2.3      51      75 ..     988    1012 ..     985    1017 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.11
        AHSP  51 kltGeqqeqdralqelrqeL 70 
                 + +G+ ++q +al+e r+e 
  KKY15761.1 828 ESKGKDEDQTKALHEAREEA 847
                 55667777777777766653 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00064
        AHSP   51 kltGeqqeqdralqelrqeLktlas 75  
                   ltG q+++d+al +lr+eL+ +as
  KKY15761.1  988 ALTGLQEQHDKALSDLRKELEESAS 1012
                  689*****************99987 PP

>> YbjQ_1  Putative heavy-metal-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.2    0.0008       2.9      30      67 ..     816     853 ..     808     863 .. 0.87
   2 ?    0.3   0.1      0.31   1.1e+03      35      71 ..     871     907 ..     858     911 .. 0.84
   3 ?   -2.5   0.3       2.2     8e+03      45      64 ..    1031    1050 ..    1023    1081 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0008
      YbjQ_1  30 nvlkdilaglrslvGGelkayeeeleeareeAlerlke 67 
                 + +k+i+++l++   G+ +  +++l+eareeA + l++
  KKY15761.1 816 ESFKQIIESLEQESKGKDEDQTKALHEAREEAARALQK 853
                 789****************************9887765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.31
      YbjQ_1  35 ilaglrslvGGelkayeeeleeareeAlerlkeeAee 71 
                  +a+l++   G l+++ +elee +   +++lk++  e
  KKY15761.1 871 AFAELKEQHTGALESLRSELEEKHAATMSQLKSRHDE 907
                 6899999999*************99999999987665 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.2
      YbjQ_1   45 GelkayeeeleeareeAler 64  
                  +el  y+++le+ ree+ + 
  KKY15761.1 1031 AELARYKSLLETVREESKAA 1050
                  68889999999999987554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3752  (0.20927); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                       291  (0.0162307); expected 17.9 (0.001)
Passed Fwd filter:                       149  (0.00831056); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 6.89u 0.52s 00:00:07.41 Elapsed: 00:00:01.29
# Mc/sec: 3416.36
//
Query:       KKY15762.1  [L=767]
Description: hypothetical protein UCRPC4_g06148 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1226  (0.0683808); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.52
# Mc/sec: 4440.04
//
Query:       KKY15763.1  [L=473]
Description: putative serine threonine-protein phosphatase 2a activator 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.1e-114  380.3   0.0   8.3e-114  380.1   0.0    1.0  1  PTPA      Phosphotyrosyl phosphate activator (PTPA) protein


Domain annotation for each model (and alignments):
>> PTPA  Phosphotyrosyl phosphate activator (PTPA) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  380.1   0.0  4.6e-118  8.3e-114       1     301 []      30     359 ..      30     359 .. 0.93

  Alignments for each domain:
  == domain 1  score: 380.1 bits;  conditional E-value: 4.6e-118
                 -B----SCHHHHHHCCCHHHHHHHHHHHHHHHHHT..................T-SS-HHHHHHHHHHHHHCCCTS---SS--SSS-THHHHHHHHHHH CS
        PTPA   1 pakrileeedlekfkkSkayadilefisrlneavkgkkl....ee......eeeasesvekllklLdeleelideippeeqpsRfGnkafrtwhdrlee 89 
                 p+k+i++  d++ f +S ay+di++f  +ln+++ ++kl    ++      + + s++v+kl++++ el+++ide+pp+++p+RfGn++fr+w++++e+
  KKY15763.1  30 PTKKIHDGPDVNFFLTSLAYRDIVTFTLQLNRSLIPRKLegrtQTfelgseNISLSDPVKKLQSMIGELTSIIDETPPDTGPRRFGNVSFRKWYNHVED 128
                 89*************************************7765115555558888999***************************************** PP

                 HHHHHHHHHS-GGGGGG.........HHHHHHHHHTTT-BTTTTEE-HHHHHHHHHHHHHHHHTT-STT.....--HHHHHHHHHHHHHHHHHHHHHTT CS
        PTPA  90 raeelleellpeelkkael...ekaaieelkaYlkesfGnatrlDYGtGhElsFlafllcLeklgllkeee.eedeealvlkvfekYlelvrrLqstYt 184
                 rae +l +++p ++ ++++   ++ a+ elkaY+++sfG+++rlDYGtGhElsFlaf+  ++klg +++e+   +e+ +vl vfe+Yl+l+r+L++tYt
  KKY15763.1 129 RAEGILAKYVPLDVLAFRSsteQDGALLELKAYFLGSFGSPQRLDYGTGHELSFLAFIAGIWKLGGFAKEDpGVEERGIVLGVFEPYLHLIRQLIKTYT 227
                 **********9999888665546677*****************************************8887677999********************** PP

                 -EES--------SSS-SHHHHHHHHC................SSS-G....GGGG-HHHHHHHTTT-HHHHHHHHHHHH--S-HHHH-HHHHHHHCC-- CS
        PTPA 185 LepAgshGvwGLDDyqflpflfGsaQ................lvehkklkpksildaevveeyakeylYlsaiafinevKkgpfrehSpmLydisavkt 267
                 LepAgshGvwGLDD +flp++fGsaQ                l++++    +++++a++ve+++k+++Y+sai+ i++vK+gpf+ehSpmL+dis+++ 
  KKY15763.1 228 LEPAGSHGVWGLDDNSFLPYIFGSAQfapaiaedeatpiegsLPDSPD--ASAVTKAAIVEDERKRNMYFSAIGNIYDVKRGPFWEHSPMLFDISGIRA 324
                 **************************7777777777666666666665..9************************************************ PP

                 .HHHHHHHHHHHHHHHTTT-HHHHTT--BBSSSBS CS
        PTPA 268 .WekvnkGlikmYkaevLskfpvvqhflfGsllpw 301
                  W+k+nkG+ikmY+aevLskfpvvqhf++Gsl++w
  KKY15763.1 325 gWAKINKGMIKMYNAEVLSKFPVVQHFPLGSLFKW 359
                 *********************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.36s 00:00:00.96 Elapsed: 00:00:00.55
# Mc/sec: 2598.36
//
Query:       KKY15764.1  [L=339]
Description: hypothetical protein UCRPC4_g06150 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-68  232.0   0.0    1.6e-68  231.8   0.0    1.0  1  DUF572    Family of unknown function (DUF572)


Domain annotation for each model (and alignments):
>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.8   0.0   9.1e-73   1.6e-68       1     280 [.       8     323 ..       8     336 .. 0.85

  Alignments for each domain:
  == domain 1  score: 231.8 bits;  conditional E-value: 9.1e-73
      DUF572   1 kYyPPDfdpski........palrekar..lknrqlvvRlmaPfnmrCktC..geyIykGvkFNarKekVgnetYlgipIfrFyikCtrClneitfkTD 87 
                 +Y+PP+++  +         +al+++ar  +++++l+vR+++Pf+++C +C  +++I++Gv+FNa+K+kVgn  Y+++pI++F++k+t+C+++i+++TD
  KKY15764.1   8 RYVPPEVEGTTSfntasgkgHALGARARklKSEGILIVRFELPFSVWCAHCkpEQIIGQGVRFNAEKKKVGN--YYSTPIWSFRFKHTACGGWIEVRTD 104
                 7*******66669*******99**999986778******************999******************..************************* PP

      DUF572  88 PkntdYvveeGatRnfkaek...leeeea....kreekekeeeeaedamkklEkrtkdskkemealesLeeLqelnqrqakvdfdanlelrkefreekk 179
                 P+nt Y v+eG++R  +++    l+e e+    ++ eke+   e+e a+ +lEk+++d++++++++ ++e L + n+r ++++++++ +lr++fr+ ++
  KKY15764.1 105 PQNTAYIVTEGGKR--RDTGegrLAEGEIvigaSEAEKER--LEKEGAFGSLEKKVEDKRAAANEKTRIEGLLKRNDRDWEDPYEKSKRLRAHFRDGRN 199
                 **************..776677766666566433444555..5579***************************************************** PP

      DUF572 180 ereeeeedeealkekislekikllpedeedekkaklle.gkte..........slfasseesaksakk.kpt.kkesskekkkeslekklskltkkkad 265
                  r++e e++e lk+k+sl  i+l +e+eed+ +a++++ g +           ++++ +e++ ++  k  ++ ++     +kk++l+++l  +tk+++d
  KKY15764.1 200 LRKAESERAEILKDKLSL-GIDLSEEREEDRIRAQMIDfGGDGagipryeamfPTHDAKETPPETRIKrGKKlSSADVFAAKKARLTSELLGNTKAAMD 297
                 ****************99.*******************7666589999998884444444443333332333355777788999999999999888888 PP

      DUF572 266 ...........sslvvrKkkkeeeks 280
                            ++ ++rKk+ e+ ++
  KKY15764.1 298 pfstateanpwQPSIKRKKPGENISE 323
                 99999999999999999999873333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2197.41
//
Query:       KKY15765.1  [L=503]
Description: putative cellular morphogenesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-95  319.2  23.0    7.2e-95  318.9  23.0    1.1  1  BUD22     BUD22


Domain annotation for each model (and alignments):
>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.9  23.0     4e-99   7.2e-95       5     432 .]      39     503 .]      36     503 .] 0.73

  Alignments for each domain:
  == domain 1  score: 318.9 bits;  conditional E-value: 4e-99
       BUD22   5 lkkLrkalkkakgferqklvkklKtakkekkskklerleeelealKslDleqiAekilaskllktkklaeseelpealks.ikdkkpksnpeekneele 102
                 +k+L+ alk a+gferqkl++++Kta+k+k++++l+rl+ee+ alK+lDl+++Aek++ ++ +ktk++ +++++++a  + +++  pk           
  KKY15765.1  39 VKQLHDALKLARGFERQKLGRRQKTATKQKNQEDLDRLKEEVLALKALDLTKLAEKHMLKQYVKTKRIHDHPAFKAAYGEnVNVDPPK----------- 126
                 79**********************************************************************9999999933333333........... PP

       BUD22 103 ktkalenvtsrLlnsktvkevveeivesvkkllgiek..kkkkkeeekkkkkkkkkkkkkkeeee...eeesdkeeesedsed..eekeeseddeeeee 194
                  ++a +n+ +rL++s++vk+++++i+++v ++lg+e+  +    ++e+ k++k+++k+ +++      ++e + e +s+d+++    +++++  +++ee
  KKY15765.1 127 -SPAEANILARLFSSNPVKQKMPRIMAGVLEVLGLEDlgA---LNPEAPKNSKSDQKDRERRPGLvsaAKEGQNETASSDESEfqGFPDDDSPANHVEE 221
                 .3666********************************642...33333333333333333322223322333333333333335522333333444444 PP

       BUD22 195 ededdedaeedeedeeaeerelaqydgllasddeded.................eyneetdeesseesdssdssesasesesessekkkkkkkkkkkka 276
                 ++++ ++++e+++d++ +e +l qy+++las++e+ +                 ++n e +++ +  s++ + s   s+s+s+++e+++k k+k+ +ka
  KKY15765.1 222 AKDSGSEGDEEVSDSDIDEMDLDQYNDRLASSSESGSdadhdddafipdlvvtaKMNGELKKSGEHISRDLSISPFPSPSPSPEPEPQQKSKPKTAAKA 320
                 4444444555788999***********9984444444455667899***99987555555555555555555555567777777777778888888888 PP

       BUD22 277 kakkvtsstfLPsL.mgGYisGsedd.easdaeesvapkRKNRrGQrARraIwEKKYGknAkHvkkekekekeerkerqkeye......erdsGWdakr 367
                 +ak++ts+tfLPsL mgGY+sGse+  +++ ++++ +++RKNRrGQrAR+ I E+KYGknAkH+ k kek +e + ++++          r+ GW+ + 
  KKY15765.1 321 TAKPTTSTTFLPSLtMGGYFSGSESGsDIQPVDDAIPQPRKNRRGQRARQLIAERKYGKNAKHLAKAKEKGQEVNWDTKRGAVvgggdkGRK-GWKGRD 418
                 888899******************977444444334444***************************98888765444333333555553333.666444 PP

       BUD22 368 gakaeedksekksksk............................akkkkkkkkddkkakaaaekelHPSWeAkkkakekkkaa.kfqGKKIvFD 432
                 g+ +  +        +                            + k+++  +++   ka+++k+lHPSWeA+kk+k++k+aa kf+GKKI+FD
  KKY15765.1 419 GKGDTGR--------GrptanegrdngmnkgrgpkisgandiamG-KTRTFGSAPGAGKADENKPLHPSWEAAKKRKQEKAAAgKFEGKKITFD 503
                 4444444........044444456777899999*********953.4444555555556899999*************999999*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1062  (0.0592336); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 3496.96
//
Query:       KKY15766.1  [L=289]
Description: putative nadh-ubiquinone oxidoreductase 304 kda subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-47  161.6   0.0    1.5e-47  161.2   0.0    1.2  1  Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd s


Domain annotation for each model (and alignments):
>> Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.2   0.0   8.6e-52   1.5e-47       2     121 ..     105     225 ..     104     226 .. 0.97

  Alignments for each domain:
  == domain 1  score: 161.2 bits;  conditional E-value: 8.6e-52
                     E--HHHHHHHHHHHHH...TT--EEEEEEEEETT..SSSEEEEEEEE--S-.-EEEEEE....-S-BEE--TTT-STHHHHHHHHHHHSHHBCTT CS
  Complex1_30kDa   2 vvepedllevakflkdeeelgfdvlsdltavDek..eerfevvyhllsleknerirvkvevdeeepevpSvtdlfpgadwyEREayDmfGivfeg 94 
                     +++p+ +++v +flk++++ ++++++d+tavD++  e+rfevvy+lls+++n rirvk+++de +p vpS+t+l+ ga+wyERE+yDmfG+ f+g
      KKY15766.1 105 YIPPAGVIPVFTFLKNHTAAEYTMVADITAVDYPtkEARFEVVYNLLSVRHNSRIRVKTYADEATP-VPSITSLYDGANWYEREVYDMFGVFFTG 198
                     78999***************************9999***********************9988899.**************************** PP

                     SSTSS-SSSSTTSSS-TTSTTS----- CS
  Complex1_30kDa  95 hpdlrrillpedfeghPLRkdfplsge 121
                     hpdlrri+++++f ghPLRkdfpl+g+
      KKY15766.1 199 HPDLRRIMTDYGFDGHPLRKDFPLTGY 225
                     ************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1970.88
//
Query:       KKY15767.1  [L=1553]
Description: putative ccr4-not core complex subunit not4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.6e-17   60.7  13.3    1.5e-16   59.9  13.3    1.4  1  zf-RING_4    RING/Ubox like zinc-binding domain
      2e-07   30.8   6.9    3.4e-07   30.0   6.9    1.4  1  zf-C3HC4_3   Zinc finger, C3HC4 type (RING finger)
      3e-05   23.8   0.0      7e-05   22.6   0.0    1.6  1  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
    0.00047   20.4  10.3    0.00078   19.7  10.3    1.4  1  zf-RING_2    Ring finger domain
     0.0052   16.6   9.4       0.11   12.4   9.9    2.3  2  Prok-RING_4  Prokaryotic RING finger family 4
     0.0061   15.9   2.6     0.0061   15.9   2.6    5.0  4  Rtf2         Rtf2 RING-finger
  ------ inclusion threshold ------
      0.015   15.0   0.4      0.032   14.0   0.4    1.6  1  zf-C3H1      Putative zinc-finger domain
        0.3   11.0  10.7       0.55   10.2  10.7    1.5  1  zf-C3HC4     Zinc finger, C3HC4 type (RING finger)
       0.86    9.6  10.8        1.5    8.9  10.8    1.4  1  zf-RING_5    zinc-RING finger domain
        1.3    9.0   5.8        2.2    8.2   5.8    1.3  1  Baculo_IE-1  Baculovirus immediate-early protein (IE-0)
        1.9    8.5   6.7        1.1    9.3   1.4    2.3  2  Prok-RING_1  Prokaryotic RING finger family 1
        3.1    7.9   9.8         14    5.8   9.8    2.0  1  DZR          Double zinc ribbon
        8.2    6.4  10.4         14    5.6  10.4    1.4  1  zf-C3HC4_2   Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9  13.3   1.1e-19   1.5e-16       1      48 []      17      65 ..      17      65 .. 0.95

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 1.1e-19
   zf-RING_4  1 cplCdeeldetdkdlkpCeCgyqiClfCyhrilee.eegrCPaCreeYk 48
                cplC+ee+d  dk+++pC+CgyqiC+fC++ ++++  +  CP+Cr++Y+
  KKY15767.1 17 CPLCIEEFDLGDKNFRPCPCGYQICQFCFNSLKNTyDKSTCPNCRRPYD 65
                9********************************9636899********7 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   6.9   2.4e-10   3.4e-07       2      49 ..      14      66 ..      13      67 .. 0.93

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 2.4e-10
                GSB-TTTSSS....BS-EEETTEEEEEE-HHHHHHHHH..TT-B-TTT--B--E CS
  zf-C3HC4_3  2 deeCviCler....prnvvllpCgHlvlCeeCaekllk..rkkkCpiCrrpiek 49
                +e+C++C e+    ++n+  +pCg++ +C+ C+++l++   k +Cp Crrp+++
  KKY15767.1 14 EETCPLCIEEfdlgDKNFRPCPCGYQ-ICQFCFNSLKNtyDKSTCPNCRRPYDE 66
                789******87778************.*********99*************986 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   5.1e-08     7e-05      16      69 ..     144     199 ..     133     200 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 5.1e-08
                 HHHHHTTSCEEEEEEEEE.TTTSEEEEE.EEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  16 kelFskfGpiksiklvrd.etgkskgfa.fVeFeskedAekAlealngkklggrel 69 
                 +++F+++G+i++i +++      ++g++ +V+F+ kedA+ +++ ++g + g+r l
  KKY15767.1 144 EQYFGQYGEIEKIVVSKAkPGAANQGIGvYVTFARKEDAAMCISMVDGSQNGDRIL 199
                 589****************9*******978******************99888866 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7  10.3   5.7e-07   0.00078       2      44 .]      16      61 ..      15      61 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 5.7e-07
   zf-RING_2  2 eCpICleelssads.vlllpCgHvfhreClerwlrssst...CPlCr 44
                +Cp+C ee++ +d+  + +pCg+ +++ C++  l+++     CP+Cr
  KKY15767.1 16 TCPLCIEEFDLGDKnFRPCPCGYQICQFCFNS-LKNTYDkstCPNCR 61
                7********99988455679***9*****988.555555567****9 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.063        87      29      41 ..      13      25 ..       7      31 .. 0.79
   2 !   12.4   9.9     8e-05      0.11       1      43 [.      17      67 ..      17      70 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.063
  Prok-RING_4 29 dlssCPlCqrris 41
                 d ++CPlC ++++
   KKY15767.1 13 DEETCPLCIEEFD 25
                 5679****98876 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 8e-05
  Prok-RING_4  1 CvlCgeq....ekkailepCgHlvCkeCfdskdls....sCPlCqrrisks 43
                 C lC e+    +k+ +  pCg  +C+ Cf+s +++    +CP C+r  +++
   KKY15767.1 17 CPLCIEEfdlgDKNFRPCPCGYQICQFCFNSLKNTydksTCPNCRRPYDEK 67
                 777777777777888889*************95555566******987665 PP

>> Rtf2  Rtf2 RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   2.6   4.4e-06    0.0061     116     201 ..      16     105 ..       2     136 .. 0.70
   2 ?   -0.3   1.0       0.4   5.5e+02     171     252 ..     295     376 ..     286     386 .. 0.60
   3 ?   -3.2   0.5       3.1   4.3e+03     177     207 ..     421     451 ..     415     463 .. 0.57
   4 ?   -2.8   5.9       2.3   3.1e+03     171     227 ..     778     835 ..     773     862 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.4e-06
        Rtf2 116 iCpltglemngktkfvalrkCG...cVfsekalkevk.sevClvCgkeykeedviplnptkeelellkarleeekakkkkkkkakkkkka 201
                  Cpl   e++   k +   +CG   c f  + lk++  +++C++C  +y+e+ +    pt e+ ++   + ++++ ++k k  +kk+ +a
  KKY15767.1  16 TCPLCIEEFDLGDKNFRPCPCGyqiCQFCFNSLKNTYdKSTCPNCRRPYDEKTIQYKIPTAEDIKQDLLNKNKKQIAAKRKETEKKEVEA 105
                 59999999998888889999**5555555566666647889************9988999997655333333333333333333333333 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.4
        Rtf2 171 tkeelellkarleeekakkkkkkkakkkkkakakgskaeaeaaskssseasesskagkkkekkkekkkrslaekneksevyk 252
                 tke ++ ++ar e++ a++ + + + ++ + + +++k + +a++  ++ +++ + a +++ ++ ++ ++s +++++++  + 
  KKY15767.1 295 TKEAQQAMRARRESQTASRSSPSPKVATATIAYNENKRKDSATPPVTQATKPVAPAAHSTISQGSSGNSSPKPSKANRTLFD 376
                 6777888888888888876666655555555555555555555555555555555555555555555555555555555555 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.1
        Rtf2 177 llkarleeekakkkkkkkakkkkkakakgsk 207
                 l++++  +e+ak +++ ++k + +a+++ ++
  KKY15767.1 421 LMREKEANERAKLEAEAQDKLQATAASTVDA 451
                 4555555555555555555555555555444 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 2.3
        Rtf2 171 tkeelellkarleeekakkkkkkkakkkkkakakgskaeaeaaskssseas.esskag 227
                 ++ee e  k+++++ ka + +  + k ++++ a+ +   ++++++++++ + + sk++
  KKY15767.1 778 KEEEHEATKEHMQQIKADAISTGSPKPRTAKVAQIHPPAHAENEQAETKDHdTPSKTS 835
                 5779999999999999998888888877777666555444443333333221222222 PP

>> zf-C3H1  Putative zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.4   2.3e-05     0.032       6      20 ..     213     227 ..     209     227 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.3e-05
     zf-C3H1   6 laGGvCnDpsCefQH 20 
                 l+G++Cn+++C f H
  KKY15767.1 213 LRGETCNNKNCTFLH 227
                 89***********99 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  10.7    0.0004      0.55       1      41 []      17      60 ..      17      60 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0004
                -TTT-S--SS-E....E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4  1 CpiCleeakepn...elleCkHsfCskCirkilksrkkvkCPlC 41
                Cp+C ee+   +   ++ +C+ ++C+ C  ++ ++  k +CP+C
  KKY15767.1 17 CPLCIEEFDLGDknfRPCPCGYQICQFCFNSLKNTYDKSTCPNC 60
                *******997777799******************988899**** PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  10.8    0.0011       1.5       2      44 .]      17      62 ..      16      62 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0011
   zf-RING_5  2 CnkCfekl.skeekfyltsCgHifCekClkkll..ekeavCpiCrk 44
                C+ C e++  ++++f   +Cg  +C+ C++ l+    + +Cp Cr+
  KKY15767.1 17 CPLCIEEFdLGDKNFRPCPCGYQICQFCFNSLKntYDKSTCPNCRR 62
                99******999999*******************999999*****95 PP

>> Baculo_IE-1  Baculovirus immediate-early protein (IE-0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   5.8    0.0016       2.2      83     134 ..      17      67 ..       8      73 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0016
  Baculo_IE-1  83 cnicedts.aeerflkPneccGykicnlcyanlwkfstvyPvcPvcktsfkss 134
                  c +c + +   ++ ++P   cGy+ic+ c+  l + +    +cP c+  + ++
   KKY15767.1  17 CPLCIEEFdLGDKNFRPC-PCGYQICQFCFNSLKN-TYDKSTCPNCRRPYDEK 67 
                  666755542456666774.48*********99965.445689****9988765 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.7      0.23   3.2e+02       3      18 ..      13      28 ..      11      38 .. 0.83
   2 ?    9.3   1.4   0.00079       1.1       5      30 ..      39      64 ..      36      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.23
  Prok-RING_1  3 tgkkCpvCgkelkeed 18
                  ++ Cp+C +e++ +d
   KKY15767.1 13 DEETCPLCIEEFDLGD 28
                 6899********9775 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00079
  Prok-RING_1  5 kkCpvCgkelkeedDiVvCpeCgtpy 30
                 ++C+ C + lk+  D  +Cp+C  py
   KKY15767.1 39 QICQFCFNSLKNTYDKSTCPNCRRPY 64
                 68*********************999 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   9.8      0.01        14       7      41 ..      23      67 ..       7      69 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.01
         DZR  7 e..........lppdarfCseCgtklkavaaedrCpsCgekvdpe 41
                e           p + + C+ C ++lk++ ++ +Cp+C ++ d++
  KKY15767.1 23 EfdlgdknfrpCPCGYQICQFCFNSLKNTYDKSTCPNCRRPYDEK 67
                55555555555788999**********9999********998876 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  10.4      0.01        14       2      40 .]      17      60 ..      16      60 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.01
  zf-C3HC4_2  2 CpiCldmlkdpsvvt...pCgHvfCqkCilr..sLeekneCPlC 40
                Cp+C++++  +   +   pCg + Cq C+       +k+ CP C
  KKY15767.1 17 CPLCIEEFDLGDKNFrpcPCGYQICQFCFNSlkNTYDKSTCPNC 60
                ********9885555777***********8742445667****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1438  (0.0802053); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.32u 0.36s 00:00:01.68 Elapsed: 00:00:00.58
# Mc/sec: 8100.81
//
Query:       KKY15768.1  [L=200]
Description: hypothetical protein UCRPC4_g06154 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.31s 00:00:00.82 Elapsed: 00:00:00.50
# Mc/sec: 1201.95
//
Query:       KKY15769.1  [L=684]
Description: putative glycoside hydrolase family 78 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-12   45.9   0.1    2.2e-11   43.6   0.0    1.8  2  Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin gly
  ------ inclusion threshold ------
       0.04   12.8   0.2      0.057   12.2   0.2    1.1  1  Trehalase        Trehalase
       0.15   11.8   0.0       0.32   10.8   0.0    1.5  1  Bac_rhamnosid_C  Bacterial alpha-L-rhamnosidase C-terminal do


Domain annotation for each model (and alignments):
>> Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0     0.086   5.1e+02       3      23 ..     180     200 ..     178     207 .. 0.84
   2 !   43.6   0.0   3.6e-15   2.2e-11      26     247 ..     239     463 ..     218     482 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.086
                      -EEEEES-HHHHHHHHHHHHH CS
  Bac_rhamnosid6H   3 tgsfecsdpllnrlhenvlws 23 
                      tg+f+++d+ lnr++ +  ++
       KKY15769.1 180 TGYFHSNDEQLNRVWYAGAYT 200
                      89*************877666 PP

  == domain 2  score: 43.6 bits;  conditional E-value: 3.6e-15
                      HTBSSSB-S-SSSS----BHHHHHHHHHHHHHHB--HHHHHHHHHHHHHH--TTS--BSB.SS--TT--B--TTTTTHHHHHHHHHHHHH--HH CS
  Bac_rhamnosid6H  26 snflgvptDCPqrdErlgWtgdaqlfaptasylydveaflekwlrdladeqrengavptv.aPevlgalsetaeWadaivivpwelyetygDke 118
                      +n ++v +D+ +r  rl W gd++++ p+  +  +    +++ l+ l  +q+++ga+p+  +P      + + +    ++i   ++y ++gDke
       KKY15769.1 239 ANGSSVLVDGAKR-DRLVWPGDIAISGPSIFVSTNDLISIKNGLDSLLAQQNASGALPYAgVPFGEIIKTWSFTYHLYTLIDIYDYYLYTGDKE 331
                      6889*********.9********************9**********************953555433334444444555666789********* PP

                      HHHHHHHHHHHHHHHHHHTSBT.TB.--S-S--STT.....-SS----HHHHHHHHHHHHHHHHHHHHHHTTS..-.-HHHHHHHHHHHHHHHH CS
  Bac_rhamnosid6H 119 ilkkqYesmkryldylkqrsddgleelskfqlgDWldpeardgaaktekalvataylvrslklvakiaellgkeed.akkyaalaeelkaafnk 211
                       l+ ++++ k  l+y +q  d+     + +   DWl            +++ a+  l+++l+l   +a++ + + + +  +++ a+++++a n+
       KKY15769.1 332 YLATAWPKFKLGLNYALQFIDS-TGLANVTTSSDWL------RFGMGAHNIEANSILYYTLNLGVTLAQISNDTSNvSTSWSNYAANIRSAANT 418
                      ********************99.4456888999***......333444555589999***************99997999************** PP

                      HHB.-TTS-BTT--.........HHHHHHHHHTT-S-GGGH.HHH CS
  Bac_rhamnosid6H 212 kyldsetgsvandt.........qtanalpLafglvpeaeraakv 247
                      +++ds    ++++          q  n+ ++  glv  + ra ++
       KKY15769.1 419 RLWDSMANCYRDNDtlpltdlhpQDGNSWAIISGLVSSSARALNI 463
                      ***666554444333555555556677777777777666665555 PP

>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   9.5e-06     0.057     308     366 ..     376     435 ..     372     470 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.5e-06
                 HHHHHHHHHHHHHHHCCCHCC-.CCHHHHHHHHHHHHHHHHHHHCEETTTTEE--EETTT CS
   Trehalase 308 DLNallyklekdiaefedklgd.setseefeekaekrkkaidkvLWneeagvylDYdlkk 366
                   N++ly   +   ++++  +d s+ s+ +++ a + ++a ++ LW+  a++y D d+  
  KKY15769.1 376 EANSILYYTLNLGVTLAQISNDtSNVSTSWSNYAANIRSAANTRLWDSMANCYRDNDTLP 435
                 5699998766554444444444378899***************************99864 PP

>> Bac_rhamnosid_C  Bacterial alpha-L-rhamnosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.4e-05      0.32      10      65 ..     579     636 ..     570     648 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.4e-05
                      TEEEE----BTTB-EEEEEEEETTEEEEEEEEEE...TTEEEEEEEE-TT-EEEEEEE- CS
  Bac_rhamnosid_C  10 kkiviaPkpggdlksvkasfeslyGkikvdWkre...dgkftlnvsvPanttaeVvLpg 65 
                      k + +aP+ +g l++v++ f++  G ++v  ++     g +++++s P +t+  V +p+
       KKY15769.1 579 KIWSVAPRLVG-LTNVESGFQTSLGYYSVTATLLdskTGDISIQISTPEGTSGSVSVPT 636
                      7789******9.*************9999988764347889****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4738.62
//
Query:       KKY15770.1  [L=493]
Description: putative mfs transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-09   36.7  21.8    2.2e-09   36.7  21.8    2.3  2  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
          4    7.5  11.4       0.15   12.1   3.9    2.3  2  Gly-zipper_Omp   Glycine zipper


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7  21.8   2.5e-13   2.2e-09      68     347 ..      70     426 ..      61     432 .. 0.72
   2 !    7.8  11.9   0.00016       1.4     121     275 ..     309     482 ..     301     490 .. 0.63

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 2.5e-13
       MFS_1  68 glllfalglllll..fasslwlllvlrv...lqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivs 161
                  ++ +++ ++++   + ss+ ++l++ +   l+ +++ +++ + +++++ +f + er+  +gl+ ++  + +++  +++g ++ +lgW ++fyi+ ++ 
  KKY15770.1  70 IFINTVILAAVPPplL-SSSLTVLAGVFhrpLTQITQLSAYQVLITAVTGYFVH-ERATRTGLVVLTLTCMSAVVSIASGPITNNLGWKYMFYINLPFV 166
                 3333333322222322.5555555555567799999999999999999999999.******************************************** PP

       MFS_1 162 llafvlfllllpeepperkrkspkeee..........................kgtgpaplvp....awkallkdpvl...w.....illialllfffg 222
                 +++++ ++++lpe++ ++  +++ +                                          + ++ l++ v    +     + +i+++  +++
  KKY15770.1 167 IVGAIGVFFWLPETQFRSTLPEQPTVQelsaahvkgiasehvetsevtesqpiY--------AkksyVQSLALTSGVYpgsFikalvAPFIMAINPTVI 257
                 ***997778887777777777655554888888888888666666444444330........1444433333333333322123234455666666777 PP

       MFS_1 223 fsglltllplylqevlgls.....................................glllaglllallalvgailallagrlsdr.........lgrrr 275
                 +++l++ lp+  ++v++ +                                     g++++g    +++l+g  ++ ++g  s +         + +++
  KKY15770.1 258 WAFLVSGLPV--VSVHHHNlltrhvlikakgfygslayilaqiwgvppynknaaeiGYFYVG--ALIGGLLGGLGGAILGDASSHvlvkrnngvFEAEF 352
                 7778888888..66666666777777777777788888888999999999999999899999..88999999888888888888889888888877799 PP

       MFS_1 276 rlllallllllaalglallavt...ssavllllvlvliGf.glgfv..fpsllalasdlappeeagtasglfntagsl 347
                 r+++  ++++laa+g++++ ++   +++ ++++++++ G+ ++g++  ++s+  ++ d     ++g+a+ +f ++ +l
  KKY15770.1 353 RIVIQAVGAVLAAVGYFVFMWAldtNHPQAYYIGSACHGLiCAGITitTTSSSLYIIDA----HRGHATEIFILLMCL 426
                 99999999999999999999988888999999999999998888886433333333333....477777777777766 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00016
       MFS_1 121 raigllsagfslGailgpllggllasslg..............Wravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallk 205
                   ig++++g+ +G +lg l g++l ++ +              +r v  ++++v++ ++ +++++ ++++++ +   +        +  ++  +++  +
  KKY15770.1 309 AEIGYFYVGALIGGLLGGLGGAILGDASShvlvkrnngvfeaeFRIVIQAVGAVLAAVGYFVFMWALDTNHPQAYYIGSAC----HGLICAG-ITITTT 402
                 557888888888888887777777766668888888888888866666666666666655544444444444444444444....3333333.444444 PP

       MFS_1 206 dpvlw...........illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrr 275
                 +  l+           i+++ ++l  f+f+++ +++  + ++  g +  +++ +++ l+ lv+ + + ++g++ +++ ++ 
  KKY15770.1 403 SSSLYiidahrghateIFILLMCLKNFIFYSFAYFINDW-VTESGSAVIFEVWGIITLGLLVANFPMYIFGKVNRKFVSKL 482
                 444422233333455667777777778888888888888.88888884477777888888888888888888888876655 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.9   1.6e-05      0.15      21      41 ..     315     335 ..     305     341 .. 0.82
   2 ?   -1.6   0.8      0.32   2.9e+03       5      12 ..     359     366 ..     355     370 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.6e-05
  Gly-zipper_Omp  21 gtGaliGAavGaavGgliGaa 41 
                     ++GaliG+ +G+++G++ G+a
      KKY15770.1 315 YVGALIGGLLGGLGGAILGDA 335
                     578999999999999988865 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.32
  Gly-zipper_Omp   5 iGAaaGal 12 
                     +GA++ a+
      KKY15770.1 359 VGAVLAAV 366
                     33333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3613.11
//
Query:       KKY15771.1  [L=586]
Description: putative fad-containing monooxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-15   56.6   0.1    1.5e-12   46.7   0.1    2.6  2  FMO-like       Flavin-binding monooxygenase-like
    2.2e-11   43.8   0.0      5e-10   39.5   0.0    2.8  3  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    1.6e-05   24.3   0.1     0.0015   17.8   0.0    2.7  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
      2e-05   24.7   0.3     0.0011   19.0   0.0    3.3  4  NAD_binding_9  FAD-NAD(P)-binding
    9.3e-05   21.8   0.0     0.0056   15.9   0.0    2.6  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
       0.08   12.2   0.0        0.8    8.9   0.0    2.6  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
       0.14   11.3   0.0        5.1    6.3   0.0    2.3  2  Thi4           Thi4 family


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.1     6e-16   1.5e-12       3     227 ..      44     261 ..      42     268 .. 0.84
   2 !    6.8   0.0   0.00074       1.9     297     334 ..     359     395 ..     288     400 .. 0.74

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 6e-16
    FMO-like   3 kvaviGaGvsGlasikccle..egleptcfersddiGGlwrfkenveeGrasiyksvvsnsskemscfsdfplpedypnflhnsklleylklfakefdl 99 
                 +v ++GaGvsG+   k      ++++   +++   +GG w   en   G          ++      fs  p p     + +  ++ eyl+   ++ dl
  KKY15771.1  44 RVLMVGAGVSGIQFAKDVSSkmQEIDLEIYDKNPALGGTWY--ENRYPGC-------ACDVPAHTYQFSWEPNPRWSKFYAPAAEICEYLNDVVDKHDL 133
                 78899999999987774433114566678999999999994..4544444.......4566666777888898888888999***************** PP

    FMO-like 100 lkyiqfkttvcsvkkrpdfstsGqwev.vtekegkkesavfdavmvctGhhvnphlplesfpGiekfkGqyfhsrdykepevfkgkrvlviGlGnsggd 197
                  ky+ f+ +v++ +    +s++ + ++  t+++gk+ +   +  +   G  +  +       G++ fkG+++h+ ++ e   ++gk v viG G sg +
  KKY15771.1 134 RKYMHFNHKVVQAEWLE-SSSTWKIDLeATDSDGKTSVVTRECDIFLKGIGTLNNWRWPDIDGLHGFKGHLMHTANWDESVDLTGKTVAVIGNGASGVQ 231
                 **********9987654.44455555447999*****99999999999999999999999*************************************** PP

    FMO-like 198 iavelsrtaeqvllstrsGswvlsrvsdsG 227
                   + l  + +q+    r+ sw+l  v+  G
  KKY15771.1 232 CVAALQPNVKQLWNYMRTSSWMLPHVFSGG 261
                 ***********************9998776 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00074
    FMO-like 297 kvkssvkeltetsaifedgtveedidvvifatGytfaf 334
                  v  +++++te+  i +++ ve +id++i +tG+  ++
  KKY15771.1 359 IVSDKITRITES-GIVDETGVERKIDAIICCTGFDASY 395
                 456789999985.67788999************98877 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0     2e-13     5e-10       2      66 ..      48     115 ..      47     117 .. 0.94
   2 ?    0.9   0.0      0.21   5.5e+02       1      17 [.     222     238 ..     222     246 .. 0.86
   3 ?   -2.5   0.0       2.4   6.2e+03      40      56 ..     337     353 ..     330     358 .. 0.65

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 2e-13
                    E--SHHHHHHHHHHHCC..TEEEEEE-SSSSSSGGG-EECETTCEECTS---E.EETTHHHHCHHHHC CS
  NAD_binding_8   2 vGaGlsGlvaAylLaka..gfdvlllekrdrlGGraasyevpgvrvdygahif.hgsgyypnvrrllr 66 
                    vGaG+sG  +A   + +   +d ++++k++ lGG ++ +++pg+++d++ah++ ++++++p+++++++
     KKY15771.1  48 VGAGVSGIQFAKDVSSKmqEIDLEIYDKNPALGGTWYENRYPGCACDVPAHTYqFSWEPNPRWSKFYA 115
                    9************99865699********************************888999*****9996 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.21
                    EE--SHHHHHHHHHHHC CS
  NAD_binding_8   1 IvGaGlsGlvaAylLak 17 
                    ++G G+sG  + ++L+ 
     KKY15771.1 222 VIGNGASGVQCVAALQP 238
                    89*********999985 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.4
                    ETTCEECTS---EEETT CS
  NAD_binding_8  40 vpgvrvdygahifhgsg 56 
                    ++ +r+  g h++h  +
     KKY15771.1 337 IGCRRFTPGDHYLHALQ 353
                    44477777888888764 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.016        40     191     227 ..      42      78 ..      34      82 .. 0.88
   2 !   17.8   0.0   5.8e-07    0.0015      90     215 ..     112     241 ..     109     288 .. 0.77
   3 ?   -1.7   0.0      0.47   1.2e+03     324     341 ..     375     392 ..     355     393 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.016
  K_oxygenase 191 kkriaVvGsGqSaaeifedllrrqkkvelklvtrsea 227
                  k r++ vG+G S+ + ++d+ ++ ++ +l+++ +++a
   KKY15771.1  42 KLRVLMVGAGVSGIQFAKDVSSKMQEIDLEIYDKNPA 78 
                  679********************99999998877665 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 5.8e-07
  K_oxygenase  90 tflpsRkefedYlrWvasq..leeqvrfgeeveevepdeeeeeelltveskdaegeeeelearn...lvlgvG..tepkiPevleklegkervvHsse 180
                  +f+ + +e  +Yl+ v+++  l + ++f+++v + e+ e++++   ++e +d++g+ +++ +r+    + g+G  ++   P++      k +++H+++
   KKY15771.1 112 KFYAPAAEICEYLNDVVDKhdLRKYMHFNHKVVQAEWLESSSTWKIDLEATDSDGK-TSVVTREcdiFLKGIGtlNNWRWPDIDGLHGFKGHLMHTAN 208
                  6777778888999999876236799**************98776677777777775.5555555111454888335667898754444568******* PP

  K_oxygenase 181 ylerkeellakkriaVvGsGqSaaeifedllrrqk 215
                    e+   +l++k++aV+G G S+ + +  l  + k
   KKY15771.1 209 WDESV--DLTGKTVAVIGNGASGVQCVAALQPNVK 241
                  ***99..89***************99999877765 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.47
  K_oxygenase 324 geeetlevdavvlATGYr 341
                  ++  + ++da++++TG++
   KKY15771.1 375 ETGVERKIDAIICCTGFD 392
                  5667889*********96 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   4.2e-07    0.0011       2      78 ..      47     119 ..      46     168 .. 0.76
   2 ?    1.3   0.0      0.12     3e+02       1      17 [.     221     237 ..     221     245 .. 0.86
   3 ?   -1.3   0.0      0.74   1.9e+03     117     154 ..     357     390 ..     347     391 .. 0.74
   4 ?   -3.0   0.0       2.5   6.5e+03      59      77 ..     473     491 ..     452     500 .. 0.58

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.2e-07
  NAD_binding_9   2 ivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtdqseelllNvpasemslftddpptfaeWlrerga 78 
                     vGaG++G+ +++ + ++    +++++ ++d++++  g+ w++++ +     vpa++ ++  + +p   ++++  ++
     KKY15771.1  47 MVGAGVSGIQFAKDVSSKM---QEIDLEIYDKNPAL-GGTWYENRYPGCACDVPAHTYQFSWEPNPRWSKFYAPAAE 119
                    59****************6...*************9.9*****************9999776666666666655553 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.12
  NAD_binding_9   1 aivGaGprGlavlerLl 17 
                    a++G G++G+ ++++L 
     KKY15771.1 221 AVIGNGASGVQCVAALQ 237
                    89*********999986 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.74
  NAD_binding_9 117 vevhraevvdleeradgqavlladgaslaadaVvLAlG 154
                     +++++++++++e+     ++ ++g + ++da++ ++G
     KKY15771.1 357 CTIVSDKITRITES----GIVDETGVERKIDAIICCTG 390
                    55666666666655....37789999999*****9999 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 2.5
  NAD_binding_9  59 mslftddpptfaeWlrerg 77 
                    +++ ++ ++ f+ W+++r 
     KKY15771.1 473 LTVKQEAQTMFNVWAQSRM 491
                    3333444455666666654 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.2e-06    0.0056       2     161 ..      44     236 ..      43     259 .. 0.70
   2 ?    2.8   0.0     0.023        58     188     242 ..     347     396 ..     340     434 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.2e-06
                  SEEEE--SHHHHHHHHHHHH..HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.....................................HHH CS
                  xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................................xxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq..agakvtlvelegtclnggcllskallgvaedaeias.....................................evv 60 
                  +v+ +G+G+ G+++a++++   ++++  ++  +++  +gg ++ + + g a d    +                                      ++
   KKY15771.1  44 RVLMVGAGVSGIQFAKDVSSkmQEIDLEIY--DKNPALGGTWYENRYPGCACDVPAHTyqfswepnprwskfyapaaeiceylndvvdkhdlrkyMHF 139
                  6899****************5557777777..444555555555544444444432224444888888899999999999999999988877777444 PP

                  HCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEEESEEEE---E..EE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  61 kklnqgielllgeevvkidpgkkkvklekkkegdeekiaydklvlAtGs..sprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvE 156
                  +    + e+l  ++  kid ++ +   ++++     + ++d  +  +G   + r ++i+G+    g+l++t + +e + l    k ++v+G+G+ Gv 
   KKY15771.1 140 NHKVVQAEWLESSSTWKIDLEATDSDGKTSV----VTRECDIFLKGIGTlnNWRWPDIDGLHGFKGHLMHTANWDESVDLT--GKTVAVIGNGASGVQ 231
                  4444556677777788888888555554444....366789999999975577778*****66666665555555554333..377************ PP

                  HHHHH CS
                  xxxxx RF
  Pyr_redox_2 157 lAaal 161
                  + aal
   KKY15771.1 232 CVAAL 236
                  *8886 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.023
                  HHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 188 aleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpste 242
                   + +al++++ +++   ++++i++ g     v+e+g e + d ++ ++G+ +s e
   KKY15771.1 347 HYLHALQQDNCTIV-SDKITRITESG----IVDETGVERKIDAIICCTGFDASYE 396
                  56667777777777.77888888777....699*****************99866 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00031       0.8      80     185 ..     130     238 ..      46     273 .. 0.56
   2 ?   -1.3   0.0       0.4     1e+03     234     273 ..     363     397 ..     346     435 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00031
  Pyr_redox_3  80 rkealeYlrevaksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeek...lvkhyskvkefhkyagqkvvViGgkn 174
                  ++++ +Y+    k  + +  + ++  +++ e++    +ts  t e++  +  +G  ++ ++++i G +    + +h+++ +e  +++g+ v+ViG + 
   KKY15771.1 130 KHDLRKYMHFNHKVVQAEWLESSSTWKIDLEATDSDGKTSVVTRECDIFLKGIGTLNNWRWPDIDGLHGfkgHLMHTANWDESVDLTGKTVAVIGNGA 227
                  33333333222222222222334444444444444445555566777777888998888888888877422477888888888899************ PP

  Pyr_redox_3 175 SavDaAlelvr 185
                  S+v     l  
   KKY15771.1 228 SGVQCVAALQP 238
                  **987666555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.4
  Pyr_redox_3 234 evkeikekeeeykvktedgkkvevkddvvlatGykpdlsf 273
                  ++++i+e+     +  e+g + ++ d ++ +tG++ ++++
   KKY15771.1 363 KITRITES-G---IVDETGVE-RKIDAIICCTGFDASYEP 397
                  56666654.2...22233322.233566777**9988765 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.002       5.1      20      58 ..      45      83 ..      41      87 .. 0.89
   2 ?    2.3   0.0     0.032        81       7      37 ..     207     237 ..     202     244 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.002
                EEEE--SHHHHHHHHHHHHC.TTS-EEEEESSSS--TTTT CS
        Thi4 20 vvivGaGssGLtaayylakk.pdlkvailersvspGGGaw 58
                v++vGaG sG+  a+ ++ k  ++ + i +++ ++GG  w
  KKY15771.1 45 VLMVGAGVSGIQFAKDVSSKmQEIDLEIYDKNPALGGT-W 83
                899**************999899*******99999874.4 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.032
                 HHHHHHHHHTEEEEEEE--SHHHHHHHHHHH CS
        Thi4   7 ryfedllkyaesDvvivGaGssGLtaayyla 37 
                 +  ++ +++    v+++G G+sG+ +   l 
  KKY15771.1 207 ANWDESVDLTGKTVAVIGNGASGVQCVAALQ 237
                 5667778888999***********9977664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.48
# Mc/sec: 3662.32
//
Query:       KKY15772.1  [L=312]
Description: putative alpha beta-hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-19   69.0   0.0    6.8e-19   68.6   0.0    1.1  1  Abhydrolase_3  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   3.8e-23   6.8e-19      61     210 ..     119     286 ..     104     287 .. 0.81

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 3.8e-23
                    HTHH.HHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---......EEEEEE.ESE...-SST..SSTTSHHHHHCHHTTTSSSSCHHHHHHHHHH CS
  Abhydrolase_3  61 eqaw.elgadpsrivlaGdSaGGnlaaavalrardegepk......vagqvl.iyP...vtdl..ertesesikkaeeladgplltraaldlfwrl 143
                    + ++ +l+++p+++ ++G SaGG ++ ++ + ar  ++++      ++ ++l + P   +  l  ++ + + +++ +e++++p+l+ a++++f ++
     KKY15772.1 119 KASAtKLNVNPDSMSIGGISAGGAISVVLQHLARVLQHLArnagipLKLCLLaVTPtteG--LaySDYTDSPFQSFHEFNKDPILPWAQTKYFGSH 212
                    34444999******************9999888877655567787777666624555442..15556666666667899999*************9 PP

                    HSS.......GGGGGSTTTSGGGCS-SST---EEEEEETT-TTHHHHHHHHHHHHHTT--EEEEEETTEETTGG CS
  Abhydrolase_3 144 ylp.......eadrddplaspllaedlsglpptlvvvaefDplrdegeayaerlraagvevelieyegmvHgfa 210
                    ++p       +a + d+++spl+a++++gl+ t++ +ae D+lrde eay  +l a g++v++++y g++H f+
     KKY15772.1 213 CMPkdklpelKAMWPDWWFSPLRATNWDGLCDTFIRTAEIDMLRDECEAYGVKLIAGGTKVTFKRYIGVPHLFM 286
                    99644454444455588*******99*********************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 1981.50
//
Query:       KKY15773.1  [L=380]
Description: putative sodium phosphate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-33  115.1   0.0    2.1e-24   86.2   0.0    2.1  2  PHO4      Phosphate transporter family


Domain annotation for each model (and alignments):
>> PHO4  Phosphate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.8   1.1e-10     2e-06      25      76 ..       1      54 [.       1      58 [. 0.93
   2 !   86.2   0.0   1.2e-28   2.1e-24     113     255 ..      60     379 ..      53     380 .] 0.90

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.1e-10
        PHO4 25 vilaaifeflGavllGaeVaetirkgivdvelf..dpselmlgmlaallgaavw 76
                +il +ife+lGa+++Ga  a+ti++gi+ +++f  +  + ml++++al++a  w
  KKY15773.1  1 MILGTIFEMLGAITVGACTADTIKNGIIPLSAFrdNAGVQMLAFTCALAAASSW 54
                58899**************************9998888899**********999 PP

  == domain 2  score: 86.2 bits;  conditional E-value: 1.2e-28
        PHO4 113 kklvkivlswvlsPllggiiaallfllvkrlilvk.eklknalralpvlvlvtiailalsilfkge................................. 177
                 k+l+ i++++ ++P++++ +a ++++lvk ++ v+ +++k+a+++ p++ l+  +i++l+i++kg+                                 
  KKY15773.1  60 KGLGAIFAGLGMAPVISAGFATIIIMLVKLVVHVRkNRVKWAVWSSPFF-LIAGTICSLYIVYKGSpnpgladkpawyiasvtlgvggslfilsgiffv 157
                 6899***************************9877799*********65.8889999*******99999999999999999999999999999****** PP

        PHO4 178 ................................................................................................... 177
                                                                                                                    
  KKY15773.1 158 pfvhakvvkrghslktwmviygplllkrpalsdteqakvpsyavvqdaeddgslisspssingkdsvegkeanekglivadakqatykellaegerkfh 256
                 *********************************************************************************999999999999999999 PP

        PHO4 178 ........................................skkddeeteklfkflqvvsaalvsfahGanDvanaiGpllaalisiyk....a.sk.ev 230
                                                         + +  ++++    +++ + ++++sfahGanD+ n +Gp+ a+++s+++    a sk ev
  KKY15773.1 257 srlykkylritqrkdlkripamvvvgalygvnydimlfrlALRAPPAVNGRSVYMLTLRTCTASFAHGANDIGNSVGPW-AVIYSAWNtgdaAfSKaEV 354
                 9999999999888888888888888888777777666553225566666667888************************.99999999998637899** PP

        PHO4 231 plwvlllgglaialGlllgGkrvik 255
                 p+w l +  + ia+Gl++++++++k
  KKY15773.1 355 PVWQLTFLSATIAFGLITYAYNIMK 379
                 ***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2703.56
//
Query:       KKY15774.1  [L=313]
Description: putative short chain dehydrogenase reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-39  136.0   0.0    1.3e-39  135.7   0.0    1.1  1  adh_short        short chain dehydrogenase
    1.8e-34  119.3   0.0    2.4e-34  118.9   0.0    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.7e-09   37.8   0.0    2.5e-09   37.3   0.0    1.2  1  KR               KR domain
    0.00025   20.3   0.0    0.00042   19.5   0.0    1.5  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
     0.0018   17.7   0.0     0.0074   15.7   0.0    1.9  2  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
     0.0025   17.3   0.0      0.082   12.4   0.0    2.1  2  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
       0.17   11.2   1.6        1.2    8.5   0.3    2.3  2  ThiF             ThiF family


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7   0.0     5e-43   1.3e-39       1     192 [.      30     226 ..      30     229 .. 0.94

  Alignments for each domain:
  == domain 1  score: 135.7 bits;  conditional E-value: 5e-43
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHH.SSESEEEE---S.S--SSGG CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee..gakalaiqvDvtdreevealvekavkkl.gkldvLvnNAGi.tgsgpfs 94 
                 kvvl+tGa++GIG+aiak++  +Gak ++ +++++++le ++k +++   + ++++ ++Dv+d++eve+++++a++   +++dvL +NAG     ++++
  KKY15774.1  30 KVVLITGAGRGIGQAIAKAFTIAGAKALIlTAYEDSELEDTKKIVQKIrpEIEVFYRAFDVRDKNEVERFIKDAAEWSqQRIDVLCANAGHsPPLVEIA 128
                 89************************999999******999999999988899*********************776689***********76778888 PP

                 GCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCT CS
   adh_short  95 elseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelre 192
                 + + ++w   +e+Nl+g++l +r vlp m kq+sG+++ +sS a+      +++Y  sK av+ l+++l +e +++gi+  a++PG++ T + ++ ++
  KKY15774.1 129 DSDPDRWWLGFEINLKGAYLFARYVLPIMRKQKSGHVIITSSRATVAVESLMSSYQISKLAVTRLADCLDEENQQYGIKTFAIHPGGIITRLLTDMEA 226
                 8888999999********************************************************************************99887765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.9   0.0   9.2e-38   2.4e-34       1     227 [.      36     271 ..      36     274 .. 0.85

  Alignments for each domain:
  == domain 1  score: 118.9 bits;  conditional E-value: 9.2e-38
                   TTTTSHHHHHHHHHHHTT-E.EEEEESSGGHHHHHHHHHHHTTSE..E..EE--TTSHHHHHHHHHHHHHHH.SSEEEEEE-----EGCSS-GGGH- CS
  adh_short_C2   1 GaasgIGraiAkalaeeGae.vvltdlneeakkrveelaeelgae..v..lecDVtdeeqvealveevvekf.gklDilvnnagiapklkgpflets 91 
                   Ga +gIG+aiAka+  +Ga+ ++lt +++++ ++++++++++  e  v   + DV+d+++ve+++++++e   +++D+l+ nag++p+   ++++ +
    KKY15774.1  36 GAGRGIGQAIAKAFTIAGAKaLILTAYEDSELEDTKKIVQKIRPEieVfyRAFDVRDKNEVERFIKDAAEWSqQRIDVLCANAGHSPP-LVEIADSD 131
                   889****************966777777777999******9997744367999***************999889**************.999***** PP

                   HHHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHH CS
  adh_short_C2  92 reefdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfd 186
                    + +   +++nl++++l+a+++lp+m+++  g ++ +ss +   v +  + y+++K a+  l+ +l  e  ++gi+  a++pg i T++ ++++  +
    KKY15774.1 132 PDRWWLGFEINLKGAYLFARYVLPIMRKQksGHVIITSSRATVAVESLMSSYQISKLAVTRLADCLDEENQQYGIKTFAIHPGGIITRLLTDMEAHK 228
                   ************************99999867777777766655666666***************************************98888744 PP

                   H..HHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEE CS
  adh_short_C2 187 e..lleelearaplgrlgtpeevaeaalfLasdeasyitGqtl 227
                   +   ++ + + +  +   +++  +++++fLas +a + +G  +
    KKY15774.1 229 DdpTMSIATSYIRPKLSEDISLPGNVCVFLASGKADFLSGRYI 271
                   41144444444444445588888****************9865 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   9.8e-13   2.5e-09       2     173 ..      31     211 ..      30     216 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 9.8e-13
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS.S---EEEE------.---TT CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee.ppikGvihaAgvlr.dklle 98 
                 ++litG+  g+G+++a+     ga+ l+l++ + ++ ed k+ +++++  ++ev ++a Dv dk++ve+ ++++ +   ++i      Ag++     ++
  KKY15774.1  31 VVLITGAGRGIGQAIAKAFTIAGAKALILTAYEDSELEDTKKIVQKIRP-EIEVFYRAFDVRDKNEVERFIKDAAEWSqQRIDVLCANAGHSPpLVEIA 128
                 579******************************9999999999999887.9*********************998877699999999999987457899 PP

                 T--HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHH....HHHHHHHHHHHHHHHHHHTEEEE CS
          KR  99 emtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYa....aaNaflDalaeyrrsqglpavsi 173
                 + + +++   ++  +kGa    +++ +    ++  +++++SS a++  +   ++Y+    a     D l e+ ++ g ++++i
  KKY15774.1 129 DSDPDRWWLGFEINLKGAYLFARYVLPimrkQKSGHVIITSSRATVAVESLMSSYQisklAVTRLADCLDEENQQYGIKTFAI 211
                 9****************988887665444449999********9998887777776222255555666666666666666666 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.6e-07   0.00042       1      75 [.      32     102 ..      32     218 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.6e-07
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT. CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekalee 75 
                      vl+tGag  iG+++ + ++   +k +il   ++ +l + +k +++     ++  e++    dvrdk+++e+ +++
       KKY15774.1  32 VLITGAGRGIGQAIAKAFTIAGAKALILTAYEDSELEDTKKIVQKIRP--EI--EVFYRAFDVRDKNEVERFIKD 102
                      89**************************99999999999887754444..45..4446789*********99985 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.9e-06    0.0074      28      77 ..      21      71 ..       7      90 .. 0.81
   2 ?   -0.9   0.0      0.35     9e+02     115     138 ..     158     181 ..     155     218 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.9e-06
                  CGSBS-GTTSEEEEES-SH.HHHHHHHHHHHTT-EEEEESSSHHHHHCHHH CS
  2-Hacid_dh_C 28 allgkelsgktvGiiGlGr.IGqavakrlkafgmkviaydrskkkeeeeee 77
                  + l  + +gk v i G+Gr IGqa+ak ++  g+k ++   ++++e e+ +
    KKY15774.1 21 KELKDSAQGKVVLITGAGRgIGQAIAKAFTIAGAKALILTAYEDSELEDTK 71
                  56677899**********88*******************999886663333 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.35
                   HCSTTTEEEEESS-GGGB-HHHHH CS
  2-Hacid_dh_C 115 akmkkgailiNtaRGglvdeeaLl 138
                   +k k+g ++i  +R+++  e  + 
    KKY15774.1 158 RKQKSGHVIITSSRATVAVESLMS 181
                   577899999999999988876554 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   3.2e-05     0.082       1      62 [.      32     102 ..      32     108 .. 0.83
   2 ?    3.0   0.0     0.023        59     139     167 ..     180     211 ..     153     253 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.2e-05
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..........EEEE--TT-HHHHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl..........elveldltdrsalerlfke 62 
                 +l+tGa   iG+a++ka+  +g + + l+ +++++ +  ++ +               d++d++++er++k+
  KKY15774.1  32 VLITGAGRGIGQAIAKAFTIAGAKALILTAYEDSELEDTKK-IvqkirpeievFYRAFDVRDKNEVERFIKD 102
                 79********************9988888885554444433.3588*****9777789************97 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.023
                 SSHHHHHHHHHHHHHH...HHHHHHT-EEEEE CS
   Epimerase 139 nspYaaaKlageklve...ayaaqyglnaiil 167
                  s Y ++Kla+ +l+    + ++qyg+++ ++
  KKY15774.1 180 MSSYQISKLAVTRLADcldEENQQYGIKTFAI 211
                 799********998651115667777776665 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.3   0.00045       1.2      14      55 ..      21      67 ..       6      71 .. 0.78
   2 ?    1.4   0.0     0.064   1.6e+02      78     110 ..      71     103 ..      67     116 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00045
                HHHHT....SEEEEE--S.HHHHHHHHHHHHHTTTEEEEEESSB--G CS
                xxxxx....xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 14 ekLrd....skvllvGaG.glGsellknLalsGvgkltlvDnDkiel 55
                ++L+d    + vl+ GaG g+G+ ++k++  +G + l l+  +  el
  KKY15774.1 21 KELKDsaqgKVVLITGAGrGIGQAIAKAFTIAGAKALILTAYEDSEL 67
                44555444477999***989***************999986666655 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.064
                 HHHHHHT-TTSEEEEEES-CCGCCS-HHHHTT- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  78 aealqeinpdveveavteritdetvleellesv 110
                 ++ +q+i p++ev     ++ d++ +e +++++
  KKY15774.1  71 KKIVQKIRPEIEVFYRAFDVRDKNEVERFIKDA 103
                 789*******************66568999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.35s 00:00:00.95 Elapsed: 00:00:00.51
# Mc/sec: 1844.57
//
Query:       KKY15775.1  [L=519]
Description: putative mannitol 1-phosphate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-23   82.5   0.0    6.4e-23   81.6   0.0    1.6  1  FAD_binding_3  FAD binding domain
    1.7e-11   44.7   1.3    5.6e-11   43.0   1.3    1.9  1  SnoaL_2        SnoaL-like domain
    2.1e-10   40.5   0.2    8.5e-10   38.5   0.2    2.1  1  SnoaL          SnoaL-like polyketide cyclase
    2.5e-07   30.8   0.2      7e-07   29.4   0.2    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    1.3e-05   24.7   1.3      0.029   13.7   0.1    2.5  2  Amino_oxidase  Flavin containing amine oxidoreductase
    8.7e-05   21.9   0.0    0.00015   21.1   0.0    1.4  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0006   19.0   1.2     0.0012   18.0   1.2    1.5  1  FAD_binding_2  FAD binding domain
     0.0016   17.8   0.0      0.026   13.8   0.0    2.1  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
     0.0023   17.6   0.6     0.0041   16.8   0.3    1.5  1  DAO            FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.014   15.4   2.0       0.19   11.7   0.3    2.3  2  NAD_binding_9  FAD-NAD(P)-binding
      0.022   13.8   0.3        1.7    7.6   0.0    2.1  2  Lycopene_cycl  Lycopene cyclase protein
      0.023   13.8   0.2      0.034   13.2   0.2    1.2  1  GIDA           Glucose inhibited division protein A
      0.048   12.3   0.1      0.075   11.7   0.1    1.2  1  HI0933_like    HI0933-like protein
      0.078   12.9   0.0       0.13   12.2   0.0    1.3  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
       0.16   11.3   0.4       0.24   10.7   0.4    1.3  1  FAD_oxidored   FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.0   5.3e-26   6.4e-23       4     347 ..     153     499 ..     150     501 .. 0.77

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 5.3e-26
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCC....CEEEEEHHCHHC CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdt....pkaradleless 95 
                    +++VGaG  Gl +a  L + G +v + e+ s+  +l+ a gl +rt  ll++ Gl+dr+   +   + +g +l+ + ++t     ++ +  e +  
     KKY15775.1 153 IAVVGAGMGGLAAAVRLLREGFDVDVYEQASELRELGAAVGLRPRTAKLLESWGLKDRYTPYT---SRVGNILSLD-GRTgapiGEIVVPSETDDP 244
                    78***********************************************************99...4445555555.4445555445555556677 PP

                    ST-CEE-.-HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEEEEE CS
  FAD_binding_3  96 pervtvy.pqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvldv 190
                     e+++++    +l ++L+++  ++ + v +  +   +++ +++v+  + d +     t +a  +vGaDG +S++r  +  +   ++++      ++
     KKY15775.1 245 DENWSDIiHRADLHNVLSSEIPRERIHVSH--KCIRVTDLGDHVELAFSDGT-----TATAAAVVGADGIHSRIRPIIMQTDAVFSGM--QAHRGT 331
                    777776516789******997776655555..55556788888877777764.....677888************9887765555555..344445 PP

                    EEEC-SCCCTTC...CEEEEECCTTEE...EEEECCE.TEEEEEEEEECCE-GGGS.CCCHHHHHHHHHHHHH..HTTSSCEE.EEEEEEEEEEEE CS
  FAD_binding_3 191 lfdadlsdivep...lvlilsaesrgv...mviPlen.tlerfyvqvearaekeer.sekfteeevkarlrei..vgektldv.eieevsawtvaq 275
                    l+ ++++d+  +     ++l ++ +++    v+P+   + ++f  +++ ++ ++e+ ++ ++++e++ rl        + ++  + +ev a+++ +
     KKY15775.1 332 LPFEKVKDLLPEklpCNWLLMNPGGVLslfVVLPYAGgEYVAFDAVLPSKEAVAESwRNMTSRDELIGRLAGFepRVLEIVRRfDKDEVLAFGMYD 427
                    55555555555567777777777777778899*****99999999998887765543999999999999864311333444445889999999988 PP

                    E.EESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHH CS
  FAD_binding_3 276 r.vaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvd 347
                    r   + ++k+r+ l GDAaH +  t GqG N+aiqDa  L+  L  +   +  ++ L+ Y e r ++ +++ +
     KKY15775.1 428 RdPISVWTKNRITLLGDAAHPMLSTRGQGANMAIQDAQILGDCLSGATP-DQFPTALQKYAELRIPITREIQQ 499
                    735899***********************************99999888.67788889999999888887765 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   1.3   4.7e-14   5.6e-11       1     102 []      14     121 ..      14     121 .. 0.84

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 4.7e-14
                 HHHHHH.HHHTTCHHHHHHTEEEEEEEEET.TSE.EESHHHHHHHHHHHHH.....HEEEEEEEEEEEEEETTEEEEEEEEEEE.EETTSSEEEEEEEE CS
     SnoaL_2   1 vrafla.alnagdldalaalfapdvvwedp.gge.lrGreairaffralfa.....afpdlrfeihdvvadgdrvavewtvtgt.ipatgrgvtvrgvd 90 
                 vr+f++ +++a++++a+ +++++d+v++++ +++ + G e++ ++    f      +  ++r     ++a+gd vav+  +     ++ g+++++ + d
  KKY15775.1  14 VRDFYRrVFDAQNAAAVKDFVTEDYVQHGAhVPPgRAGLEGFVRM---IFPdgpvpEPAEMRRPPAFMIAEGDMVAVSAYFPQPdAERPGETYDYYVFD 109
                 899**889********************99776656677777773...44333344677777777778**********999877999************ PP

                 EEEEETTEEEEE CS
     SnoaL_2  91 vfrvrdGkiveh 102
                  fr++dGk++eh
  KKY15775.1 110 AFRIEDGKLAEH 121
                 **********98 PP

>> SnoaL  SnoaL-like polyketide cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.2   7.1e-13   8.5e-10       2     121 ..      13     129 ..      12     130 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 7.1e-13
                 HHHHHHHHHHHTT-HHHHHGTEEEEEEETCCTTTCECHHHHHHHHHHHHHHHCT.....TCEEEEEEEEEETTEEEEEEEEEEEESSEBTTBE-TT-EE CS
       SnoaL   2 lvlrfyeevwnsgdldaldelvaedvvdhnpeeeparGlegfrafveelfkafP.....DlkvevedlvaegdkvaarltftGthtgeflGipptGkkv 95 
                 lv++fy+ v++ ++ +a++++v+ed+v+h +  +++ G++g+  fv++ f + P     +++ +   ++aegd va+ + f  ++     +    G + 
  KKY15775.1  13 LVRDFYRRVFDAQNAAAVKDFVTEDYVQHGA--HVPPGRAGLEGFVRMIFPDGPvpepaEMRRPPAFMIAEGDMVAVSAYF-PQP-----DAERPGETY 103
                 6899*************************55..9999999999999999876444344456678999************99.444.....44559**** PP

                 EEEEEEEEEEETTEEEEEEEEECHHH CS
       SnoaL  96 kfeeitllrvedGkIveewdviDllg 121
                 ++  ++ +r+edGk +e+w+ i++++
  KKY15775.1 104 DYYVFDAFRIEDGKLAEHWSSINKAA 129
                 **********************9986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.2   5.8e-10     7e-07       1      30 [.     155     184 ..     155     187 .. 0.95

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 5.8e-10
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdr 30 
                    +vGaG++Gl+aA +L ++gfdv+++e+++ 
     KKY15775.1 155 VVGAGMGGLAAAVRLLREGFDVDVYEQASE 184
                    8*************************9986 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   2.4e-05     0.029       1      22 [.     160     181 ..     160     185 .. 0.92
   2 !    9.4   0.1   0.00047      0.57     216     257 ..     261     302 ..     254     305 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.4e-05
                    HHHHHHHHHHHHTTEEEEEEES CS
  Amino_oxidase   1 laGLaaArqLlsaGfdVtvlEa 22 
                    + GLaaA +Ll+ GfdV v+E 
     KKY15775.1 160 MGGLAAAVRLLREGFDVDVYEQ 181
                    78*******************6 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00047
                    HHHTTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEE CS
  Amino_oxidase 216 laeelrgldirlntrVkeikregdgvtvtledgevveaDaVv 257
                    l++e+++ +i++++++ +++  gd v + ++dg++ +a aVv
     KKY15775.1 261 LSSEIPRERIHVSHKCIRVTDLGDHVELAFSDGTTATAAAVV 302
                    666899***********************************9 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.2e-07   0.00015       2     112 ..     152     310 ..     151     361 .. 0.64

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.2e-07
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE......TTHCHHHCSHHHHCHHHHHHHHHHHHH.................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxx.................................... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve......legtclnggcllskallgvaedaeias.................................... 57 
                  +++v+G+G++Glaaa +l + g++v ++e      + g+ ++ ++  +k l++++ + +                                       
   KKY15775.1 152 NIAVVGAGMGGLAAAVRLLREGFDVDVYEqaselrELGAAVGLRPRTAKLLESWGLKDRYTPytsrvgnilsldgrtgapigeivvpsetddpdenws 249
                  79**************************9888887777788888888888888777776666667777777777777777777777777766665555 PP

                  ..........HHHHCHHHHCCCCHC..CTCEEEEESCEEEEETEEEC......TCEEEEEESEEEE---EEE- CS
                  ..........xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 ..........evvkklnqgielllg..eevvkidpgkkkvklekkke......gdeekiaydklvlAtGsspr 112
                                         l    +  +i   +k++ ++++ +      +d+++ ++ ++v A G ++r
   KKY15775.1 250 diihradlhnV------------LSseIPRERIHVSHKCIRVTDLGDhvelafSDGTTATAAAVVGADGIHSR 310
                  43332222210............11111122222222222222222244555566667777777777775444 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   1.2     1e-06    0.0012       2      35 ..     153     186 ..     152     192 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1e-06
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGG CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefg 35 
                    + V+G+G++GLaAA+++ ++G +v v e+++e +
     KKY15775.1 153 IAVVGAGMGGLAAAVRLLREGFDVDVYEQASELR 186
                    68**************************998865 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.2e-05     0.026     158     220 ..     144     204 ..     126     222 .. 0.80
   2 ?    1.6   0.0      0.11   1.3e+02     214     275 ..     257     315 ..     233     327 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.2e-05
  Pyr_redox_3 158 efhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrlee 220
                    +  + ++++V+G++  +  aA+ l r+g +V v+ + se+++      + l+p++ + le+
   KKY15775.1 144 RNTTSQYKNIAVVGAGMGGLAAAVRLLREGFDVDVYEQASELRELG--AAVGLRPRTAKLLES 204
                  333567799*******************************999886..667799999888876 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.11
  Pyr_redox_3 214 ienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflk 275
                   +n l + + +e  +++  ++  ++++   ++++ ++dg++ +    vv a G ++ ++++ 
   KKY15775.1 257 LHNVLSSEIPRE--RIHVSHKCIRVTDLGDHVELAFSDGTTAT-AAAVVGADGIHSRIRPII 315
                  444444444445..67888889999*************98755.588999999999988764 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.3   3.4e-06    0.0041       2      33 ..     153     186 ..     152     228 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.4e-06
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekgdiag 33 
                 ++++G+G+ Gl++A  L r+g  V ++e+++++ 
  KKY15775.1 153 IAVVGAGMGGLAAAVRLLREGfdVDVYEQASELR 186
                 9****************9999********98854 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   0.00016      0.19       1      35 [.     154     183 ..     154     193 .. 0.85
   2 ?    3.0   0.1     0.077        92     119     154 ..     271     306 ..     255     308 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpse 35 
                    a+vGaG+ Gla++ rLl++      ++++++++++
     KKY15775.1 154 AVVGAGMGGLAAAVRLLRE-----GFDVDVYEQAS 183
                    89****************9.....58999988854 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.077
  NAD_binding_9 119 vhraevvdleeradgqavlladgaslaadaVvLAlG 154
                    +++++++++++ +d++++  +dg++ +a aVv A G
     KKY15775.1 271 HVSHKCIRVTDLGDHVELAFSDGTTATAAAVVGADG 306
                    4578999999999******************98766 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.2     0.016        20       2      27 ..     153     178 ..     152     186 .. 0.79
   2 ?    7.6   0.0    0.0014       1.7      84     148 ..     252     314 ..     242     339 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.016
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkv 27 
                    ++v+GaG  gl+ A rl ++  ++ v
     KKY15775.1 153 IAVVGAGMGGLAAAVRLLREGFDVDV 178
                    79***************665555444 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0014
  Lycopene_cycl  84 vsskrlkeellerlvengvklleakvesveeeeageslvvleggrkirarlvvdarglaslkkar 148
                    +++++l+++l  +++  +++ ++ k  +v++  + ++  + ++g +  a +vv a g+ s+ ++ 
     KKY15775.1 252 IHRADLHNVLSSEIP-RERIHVSHKCIRVTDLGD-HVELAFSDGTTATAAAVVGADGIHSRIRPI 314
                    89************9.899999*********999.9*********************77766332 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   2.8e-05     0.034       2      31 ..     153     182 ..     152     198 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.8e-05
                 EEEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLithk 31 
                 + V+G+G+ G++AA+ + r G++v  + + 
  KKY15775.1 153 IAVVGAGMGGLAAAVRLLREGFDVDVYEQA 182
                 78**********************999433 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   6.3e-05     0.075       2      35 ..     152     185 ..     151     188 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.3e-05
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakkl 35 
                  +++v+G+G  Gl aA+++ ++g +V ++e+a++l
   KKY15775.1 152 NIAVVGAGMGGLAAAVRLLREGFDVDVYEQASEL 185
                  689**************************99765 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011      0.13       1      36 [.     152     187 ..     152     210 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
                 EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHH CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagleVvlvdiseeale 36 
                 ++av+GaG+ G   a  ++++g++V +++ ++e  e
  KKY15775.1 152 NIAVVGAGMGGLAAAVRLLREGFDVDVYEQASELRE 187
                 69**************************99877655 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4    0.0002      0.24       2      29 ..     153     180 ..     152     185 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0002
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLve 29 
                   + VvG+g++G+aAA+   r+G  v + e
    KKY15775.1 153 IAVVGAGMGGLAAAVRLLREGFDVDVYE 180
                   79*******************8886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.50
# Mc/sec: 3094.11
//
Query:       KKY15776.1  [L=320]
Description: putativelike family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-32  112.0   0.0    5.4e-32  111.2   0.0    1.4  1  NmrA            NmrA-like family
    7.6e-10   39.0   0.0    9.6e-10   38.6   0.0    1.2  1  NAD_binding_10  NAD(P)H-binding
      3e-05   23.6   0.0    4.9e-05   22.9   0.0    1.3  1  Epimerase       NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.036   13.1   0.0       0.06   12.3   0.0    1.3  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
      0.046   14.2   0.0       0.12   12.8   0.0    1.7  2  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai
       0.11   12.6   0.0       0.23   11.6   0.0    1.4  1  DapB_N          Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.2   0.0   1.8e-35   5.4e-32       1     233 []       7     269 ..       7     269 .. 0.87

  Alignments for each domain:
  == domain 1  score: 111.2 bits;  conditional E-value: 1.8e-35
                 EEESSTTSHHHHHHHHHHHH.HT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG....................... CS
        NmrA   1 IlviGaTGrqGksvvrallk.aghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy....................... 75 
                 I v+GaTG+qG+sv+r +l+ + +kvr l+R+ +s ++ +l++ G+e+v++dldd + l++a+k+++v+fsvt+++                       
  KKY15776.1   7 ICVVGATGNQGGSVARRFLQdSRFKVRGLTRNNTSPASLELAALGAEMVNADLDDVDTLKQAFKDANVIFSVTQYWepftrpdcrlkakelgitcrrya 105
                 89*************99998799**************************************************************************** PP

                 .S-HHHHHHHHHHHHHHHS.-...SEEEEEE---GG.GT.SSS---TTTHHHHHHH.HHHHHC....TS-EEEEEE-EEGG..G-BSSS-SS-BEEE-T CS
        NmrA  76 .skeiedgkklvdAakeaG.v...khfiySslgddndrsnaeepavphfdsKaeie.eyvral....gipytfvyagffme..nflsllaqlkvgdtap 162
                  + e ++gk++ dAa+        + f+ S+l  + + sn+e+ +++hfdsKa i   yvr+        ++ + +g fm   n+l++ +    ++++ 
  KKY15776.1 106 yDVEYQQGKNITDAAATTVeTldeNGFLVSTLSHARKCSNGEYTELYHFDSKADIFpYYVRETypalAAKMSCIQTGYFMTshNILPNSYF---QKLS- 200
                 **************986544323357***************************9951467776776688899999****972255555554...2333. PP

                 TS.-EEEEESS-TTS-EE..-HHHHHHHHHHHHHHHHHHHTTEEEEE-SEEE-HHHHHHHHHHHHTS-EEEEE CS
        NmrA 163 pedkvtllgpgnpkavll..daeeDiGafvikilkdprklkgkriklagntlsgneivelfekkigktvkYtq 233
                    ++++  p +p+  ++  d + D+G+fv ++ + p    gk +   g  +s ++ ++l++k++g + +Y+q
  KKY15776.1 201 -DGSIQMRFPTHPDRLIPhlDVNGDTGNFVYAVYQMP---PGKDYMAMGSQCSWKDFITLWSKVTGHPTSYKQ 269
                 .33567777888877777779999********99877...69999999*********************9986 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   3.2e-13   9.6e-10       1      69 [.      11      85 ..      11     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 3.2e-13
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH.CTTTCEEEE--TT-CCHHHHHHTT-SEEEES-.....- CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaele.aeeglevvegdvtdvedlaealkgadaVvsal.....g 69
                    GAtG+ G  ++++ l+++ ++v+ l+Rn  + a+le a+ g+e+v +d+ dv++l++a+k+a++++s +      
      KKY15776.1 11 GATGNQGGSVARRFLQDSRFKVRGLTRNNTSPASLElAALGAEMVNADLDDVDTLKQAFKDANVIFSVTqywepF 85
                    9***************************877777776679***************************98555441 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.6e-08   4.9e-05       1      67 [.       7      74 ..       7      81 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.6e-08
                EEEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHC..EEEE--TT-HHHHHHHHHHHT-SE CS
   Epimerase  1 ilVtGatGfiGsalvkallekg.yevigldrlssasntarledl..elveldltdrsalerlfkeeqpda 67
                i+V+GatG  G  +++++l+    +v gl+r++++ ++ +l+ l  e+v++dl d + l+++fk+   ++
  KKY15776.1  7 ICVVGATGNQGGSVARRFLQDSrFKVRGLTRNNTSPASLELAALgaEMVNADLDDVDTLKQAFKDA--NV 74
                89*******9999999998888688***************9999********************64..44 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     2e-05      0.06       2      74 ..       9      79 ..       8      89 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2e-05
   3Beta_HSD  2 vtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihla 74
                v+G++G  G ++ +++++  +  +vr l  ++ ++ + el  ++ + ++++D+ d d+l++a ++++v++ + 
  KKY15776.1  9 VVGATGNQGGSVARRFLQDSR-FKVRGLTRNNTSPASLELAALGAE-MVNADLDDVDTLKQAFKDANVIFSVT 79
                99****************996.99****999999998999999998.**********************9886 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.1e-05      0.12       2      73 ..       7      78 ..       6      81 .. 0.77
   2 ?   -2.6   0.0       2.5   7.3e+03      79     104 ..     120     145 ..     112     171 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.1e-05
                    EEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTT.TTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE- CS
  Semialdhyde_dh  2 vaivGatGyvGqellrlLeehpevelvvllsssr.saGkklaeavkaleegkdlkvedvdeeelkevdivfla 73
                    + +vGatG+ G  ++r+  ++  +++  l+ ++   a  +la++      ++dl   d+ ++++k+++++f+ 
      KKY15776.1  7 ICVVGATGNQGGSVARRFLQDSRFKVRGLTRNNTsPASLELAALGA-EMVNADLDDVDTLKQAFKDANVIFSV 78
                    679***********************99999888446666666633.44444444444777888999999985 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.5
                     HHHHHHHHHHTTSEEEESSSTTTTST CS
  Semialdhyde_dh  79 skelapklaeagvkviDlssdfRlkd 104
                     ++  +++l e+g+ v  ls + + ++
      KKY15776.1 120 AATTVETLDENGFLVSTLSHARKCSN 145
                     55566666677776666666655444 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.6e-05      0.23       3      73 ..       7      77 ..       6      94 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.6e-05
                EEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S-BEBSSHHHHHHH-SEEEE CS
      DapB_N  3 vavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklgvavtddleevlekadvliD 73
                + vvGa+G  G +v++   +++++++ +   +++s+++ + a   +++ + ++   d+l++++++a+v+  
  KKY15776.1  7 ICVVGATGNQGGSVARRFLQDSRFKVRGLTRNNTSPASLELAALGAEMVNADLDDVDTLKQAFKDANVIFS 77
                78***************************999998777777766666667777777999999999888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 2153.81
//
Query:       KKY15777.1  [L=386]
Description: putative methyltransferase domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-22   80.3   0.0    2.5e-22   79.4   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
    4.8e-14   52.8   0.0    1.7e-13   51.1   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
    1.2e-11   44.6   0.1    2.7e-10   40.2   0.1    2.1  1  Methyltransf_31  Methyltransferase domain
    3.7e-09   37.1   0.0    8.3e-09   36.0   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    2.2e-08   34.7   0.0    1.1e-07   32.5   0.0    2.1  1  Methyltransf_12  Methyltransferase domain
    0.00017   21.1   0.0    0.00051   19.6   0.0    1.7  2  Methyltransf_4   Putative methyltransferase
    0.00045   19.8   0.0      0.001   18.6   0.0    1.5  1  MTS              Methyltransferase small domain
     0.0097   16.0   0.0      0.018   15.2   0.0    1.4  1  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.021   14.2   0.0      0.038   13.4   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.025   13.9   0.0       0.21   10.9   0.0    2.3  3  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.037   13.3   0.0      0.078   12.3   0.0    1.5  1  CMAS             Mycolic acid cyclopropane synthetase
      0.067   12.9   0.0       0.11   12.3   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.0   1.7e-25   2.5e-22      19     164 ..     145     303 ..     117     304 .. 0.75

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 1.7e-25
  Methyltransf_23  19 k.lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeqeaae.pqgkfdlIvlrevlehvpdppellrqiatl 108
                        ++   r+Ld+GcGtGi++  +++++   +v gvDlsp++ +++  + +++++  +e+e++  +++kfd+I+ r + ++  d+p+  rq++++
       KKY15777.1 145 PsEEDHLRILDLGCGTGIWAIDMADEFPkaTVLGVDLSPIQPHWV-PINCQFQVDDYEDEWTWrEDEKFDYIHGRALSGSSSDWPRFYRQMRQH 237
                      2255666****************9997767999***********8.444444444444444333778*************************** PP

  Methyltransf_23 109 lkpgGylllseplasl........kedrllldw..lylvpagrhi.sffsarslkelleeaGlevve 164
                      lkpgG+++ +e++  +         ++ + ++w  ++++   r +  +  a++ k+++ +aG+e+v+
       KKY15777.1 238 LKPGGWAEMQEYDT-WvfsdddscDRAPWTMEWieKMEAASRRYGkPMNVAKNHKQWMIDAGFEDVK 303
                      ***********754.3466666666666666665334443324446777899************996 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   1.1e-16   1.7e-13       1      97 []     153     242 ..     153     242 .. 0.88

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 1.1e-16
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG..BSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaed..lpfedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      +LdlGcGtG +++++a++++ka+v+gvD+s+ +   +        +n++f++ d ed     ed++fD+++ + al+  s +d+++++++++++
       KKY15777.1 153 ILDLGCGTGIWAIDMADEFPKATVLGVDLSPIQPHWVP-------INCQFQVDDYEDewTWREDEKFDYIHGR-ALSG-SSSDWPRFYRQMRQH 237
                      8******************99**********9977654.......3779******88634479*********5.7776.568************ PP

                      EEEEE CS
  Methyltransf_25  93 LkpgG 97 
                      LkpgG
       KKY15777.1 238 LKPGG 242
                      ****9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.1   1.8e-13   2.7e-10       2     136 ..     148     291 ..     147     316 .. 0.78

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.8e-13
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieelekl.ledekfDlilsnevlnaladpdkil 94 
                      +++lr+lDlGCGtG  ++ +a+e +pka+v G+D s+           +    n++F++ d e+   +  edekfD+i+ +++    +d + ++
       KKY15777.1 148 EDHLRILDLGCGTGIWAIDMADE-FPKATVLGVDLSPIQ--P------HWVPINCQFQVDDYEDEW-TwREDEKFDYIHGRALSGSSSDWPRFY 231
                      6789*****************55.89**********943..2......2335699*********55.44678********9999********** PP

  Methyltransf_31  95 eeiervlkpggilliedpr..............llaelpakveeeskay....evvegak 136
                      +++ + lkpgg   +++++              +  e ++k+e+ s+ y    +v++ +k
       KKY15777.1 232 RQMRQHLKPGGWAEMQEYDtwvfsdddscdrapWTMEWIEKMEAASRRYgkpmNVAKNHK 291
                      *****************9977777777777666444444555555554445554444444 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   5.5e-12   8.3e-09       1      94 [.     154     244 ..     154     246 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 5.5e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC..TSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaek..lpfednsfDlvvssevlhhvedpekalkeiaRvLkp 90 
                      Ld+GcGtG+ a ++a+ +  a+v+gvDls+ +  ++       +++++f+v d e+  +  ed++fD +  +       d+ ++ +++++ Lkp
       KKY15777.1 154 LDLGCGTGIWAIDMADEFpkATVLGVDLSPIQPHWV-------PINCQFQVDDYEDewTWREDEKFDYIHGRALSGSSSDWPRFYRQMRQHLKP 240
                      8**************9999*************9888.......33578899999986556899*********999999**************** PP

                      EEEE CS
  Methyltransf_11  91 gGll 94 
                      gG+ 
       KKY15777.1 241 GGWA 244
                      **85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   7.5e-11   1.1e-07       1      98 [.     154     243 ..     154     244 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 7.5e-11
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++GcGtG  +  +++++p ++++gvD+sp + +      +++ ++  ++++++++        ++fD+++   +     d+ ++ +++r++Lk
       KKY15777.1 154 LDLGCGTGIWAIDMADEFPKATVLGVDLSPIQPHWVPINCQFQVDDYEDEWTWRED--------EKFDYIHGRALSGSSSDWPRFYRQMRQHLK 239
                      8******************************9922222222222222234444433........4***************************** PP

  Methyltransf_12  95 pgGr 98 
                      pgG+
       KKY15777.1 240 PGGW 243
                      ***7 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   3.4e-07   0.00051       5      34 ..     153     182 ..     149     191 .. 0.92
   2 ?   -2.6   0.0       2.2   3.3e+03      98     115 ..     229     246 ..     225     256 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.4e-07
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES- CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEir 34 
                     +l++GcG G + +++A ++P+ ++lG++++
      KKY15777.1 153 ILDLGCGTGIWAIDMADEFPKATVLGVDLS 182
                     79*************************975 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.2
                     HHHHHHHHHEEEEEEEEE CS
  Methyltransf_4  98 ellkelarvLkkgGvlel 115
                      +  ++ + Lk+gG  e+
      KKY15777.1 229 RFYRQMRQHLKPGGWAEM 246
                     566777888888886555 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   6.9e-07     0.001      33      64 ..     151     182 ..     141     185 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 6.9e-07
                 SEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  33 gkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                  ++lDlGcG+G+ ++ +a+e p+a+v  vd +
  KKY15777.1 151 LRILDLGCGTGIWAIDMADEFPKATVLGVDLS 182
                 479**********************9999975 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.2e-05     0.018      23      67 ..     151     196 ..     116     209 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-05
                 -EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH..TTEEEEC CS
        FtsJ  23 ktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl..pgvttiq 67 
                  +++Dlg+++G w+  ++ ++ + + v++vDl p++p+  p   ++q
  KKY15777.1 151 LRILDLGCGTGIWAIDMADEFPK-ATVLGVDLSPIQPHwvPINCQFQ 196
                 469************99999975.***********998765444445 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.5e-05     0.038     164     195 ..     152     184 ..     145     207 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.5e-05
        PrmA 164 evlDvGtGSGiLaia.aakLgakkvvavDiDev 195
                 ++lD+G+G+Gi ai  a  +  ++v++vD+ ++
  KKY15777.1 152 RILDLGCGTGIWAIDmADEFPKATVLGVDLSPI 184
                 79************62678999*******9986 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00014      0.21      49      81 ..     145     182 ..     121     186 .. 0.69
   2 ?   -0.6   0.0      0.47     7e+02     129     151 ..     224     246 ..     206     254 .. 0.78
   3 ?   -3.0   0.0       2.4   3.6e+03     202     218 ..     288     304 ..     285     309 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
                      T......EEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran  49 a......kvlDvagGtgDlafklsdsvgekgkvvvlDin 81 
                             ++lD+ +Gtg +a++++d+   k +v ++D++
       KKY15777.1 145 PseedhlRILDLGCGTGIWAIDMADEFP-KATVLGVDLS 182
                      23445559*****************975.5678888887 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.47
                      -S-HHHHHHHHHHHEEEEEEEEE CS
  Ubie_methyltran 129 vtDklkaLkeayrvlkpGGrlvv 151
                       +D ++  +++++ lkpGG   +
       KKY15777.1 224 SSDWPRFYRQMRQHLKPGGWAEM 246
                      578899999**********7655 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.4
                      HHHHHHHHHTTEEEEEE CS
  Ubie_methyltran 202 etlkeliedaGfksvey 218
                      ++ k+ + daGf+ v+ 
       KKY15777.1 288 KNHKQWMIDAGFEDVKE 304
                      56688899999999985 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.2e-05     0.078      65     164 ..     152     246 ..     148     273 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.2e-05
                 EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG-----SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT-EE CS
        CMAS  65 tlLdiGcGWGslvrravery.dvkvvglTlSkeqaklakkrvdeldlerkvevklldyedldekvdrvvsvgafehvgkenydtffkklkkllkedGll 162
                 ++Ld+GcG G  ++ +++++  + v+g+ lS  q +++  +++ +    +   +   +++ dek+d +    +      + +++f++++ + lk++G  
  KKY15777.1 152 RILDLGCGTGIWAIDMADEFpKATVLGVDLSPIQPHWVPINCQFQV---DDYEDEWTWRE-DEKFDYIHGRALS--GSSSDWPRFYRQMRQHLKPGGWA 244
                 79*****************96799********99999876665332...12223345665.6678877654443..34667888888888888888765 PP

                 EE CS
        CMAS 163 ll 164
                  +
  KKY15777.1 245 EM 246
                 54 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.1e-05      0.11      42      82 ..     145     185 ..     117     206 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.1e-05
  Methyltransf_16  42 anelsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                       +e  +l++l+LG GtG+  + +a   p+a v+  Dl+ ++
       KKY15777.1 145 PSEEDHLRILDLGCGTGIWAIDMADEFPKATVLGVDLSPIQ 185
                      5677889*************************999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.51
# Mc/sec: 2298.88
//
Query:       KKY15778.1  [L=592]
Description: putative phosphotransferase enzyme family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-08   32.4   1.0      1e-06   28.8   0.1    2.9  3  APH       Phosphotransferase enzyme family
     0.0063   15.9   1.0        2.5    7.4   0.0    2.6  2  Kdo       Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.077   12.3   0.0       0.13   11.6   0.0    1.3  1  EcKinase  Ecdysteroid kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1      0.79   4.7e+03     117     148 ..      26      54 ..      16      58 .. 0.77
   2 !   28.8   0.1   1.7e-10     1e-06     119     198 ..     268     345 ..      69     352 .. 0.62
   3 ?   -1.6   0.0      0.34     2e+03     100     143 ..     344     388 ..     341     427 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.79
                 SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHH CS
         APH 117 dflaqdlellrqlesatarllaselldlleel 148
                 + ++++l+++++  s+  r+l+ +l++ l+++
  KKY15778.1  26 YTRHRWLYNEAYHLSQ--RYLKFNLQE-LLKA 54 
                 5567789999999999..999999999.5444 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 1.7e-10
                 HCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--S.....SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 119 laqdlellrqlesatarllaselldlleeleeqvlaalaallpg.....elptvllHgDlhpgNllvdpddgrvtGviDfedagl 198
                 ++++++ +r +  + ++++a +lld       + l+  +a +p+       +++l+H Dlh++N+ vdp   r+  viD++ a +
  KKY15778.1 268 AHSRMNYARSVTGYEQPKDAIDLLD-------RYLQLTPAMVPPkheadIHSATLWHPDLHLNNVFVDPKSKRINQVIDWQSAAV 345
                 3344555555555555555555555.......44444444444455555458*****************************9865 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.34
                 HHHCCHHCH..-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC CS
         APH 100 eflaalhqvd.paalpladflaqdlellrqlesatarllaselld 143
                 ++l  +hq++ p+  + +++ ++dl+ l++++   ++l + e ++
  KKY15778.1 344 AVLPFFHQCRvPPMFRHPRPIDDDLNTLQKRPGNYKDLNQDEKKQ 388
                 566668999766655555666677777777777766555555554 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00042       2.5      71     130 ..     122     180 ..     105     189 .. 0.82
   2 !    6.5   0.2   0.00081       4.8     132     166 ..     308     340 ..     305     389 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00042
         Kdo  71 agvavpkpvaagavkvgleyrAlllterlegaqdLedllakwaelaeelkrallkavgrl 130
                 + + +p+++a  a + ++     +l e+ +g + L +l ++w+e++ + ++  +++v ++
  KKY15778.1 122 LNISTPRIIAWSADRNNPVGAEYILEEKAQG-EQLGKLWQDWHEWPMRARAGVIEQVVQM 180
                 4799*************99888888777666.77**********************9887 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.00081
         Kdo 132 aklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                 a++h+a + H dl   n++++ +   ++   +iD 
  KKY15778.1 308 ADIHSATLWHPDLHLNNVFVDPKS--KRINQVIDW 340
                 689******************998..444445553 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.1e-05      0.13     163     249 ..     260     344 ..     235     349 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.1e-05
    EcKinase 163 feelleellkaalealreelpelekeaekleklkenlferllelve...ekeeefnvlnHGDlwvnNimfkydeegepedvilvDFQlsr 249
                  +++++    + ++++ +++ ++e+ ++++ +l +++++   ++v    e++ + ++l H Dl++nN+ +  +++ ++++v  +D+Q + 
  KKY15778.1 260 EKKYISLYAHSRMNYA-RSVTGYEQPKDAI-DLLDRYLQLTPAMVPpkhEADIHSATLWHPDLHLNNVFVDPKSK-RINQV--IDWQSAA 344
                 3444444444444444.6667775555444.6777888888888877767888999**************88766.67776..7999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.54
# Mc/sec: 3292.02
//
Query:       KKY15779.1  [L=1567]
Description: putative sister chromatid cohesion and dna repair protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-07   29.0   4.6       0.27   11.6   0.0    6.4  6  HEAT      HEAT repeat
    0.00016   22.0   3.9      0.008   16.5   0.2    4.7  6  HEAT_2    HEAT repeats
  ------ inclusion threshold ------
      0.077   13.5   3.0        2.6    8.6   0.1    4.2  4  HEAT_EZ   HEAT-like repeat


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.14   8.4e+02       8      27 ..      84     103 ..      82     104 .. 0.87
   2 ?    0.5   0.0      0.16   9.8e+02       2      29 ..     348     375 ..     347     377 .. 0.86
   3 ?    1.0   0.0      0.11   6.8e+02       5      27 ..     430     452 ..     427     454 .. 0.77
   4 !   11.6   0.0   4.4e-05      0.27       2      27 ..     471     496 ..     470     498 .. 0.89
   5 !    7.3   0.1    0.0011       6.7       4      30 ..     520     546 ..     517     547 .. 0.88
   6 ?    1.5   0.0     0.078   4.6e+02      11      30 ..    1038    1057 ..    1036    1057 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.14
                 HHT-SSHHHHHHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAakaLgal 27 
                 ll +++  VR+ Aa +++++
  KKY15779.1  84 LLAHKDRGVRARAAVCIVDI 103
                 67889999*********998 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.16
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                 +P l   l  +s   R  A +++g+l  
  KKY15779.1 348 IPQLEAELGAESVPLRILATETIGDLTA 375
                 78888889999999***********976 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.11
                 HHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgal 27 
                 +l+  +D sp+VR a + a+ ++
  KKY15779.1 430 FLSRRQDRSPSVRTAWIAAISRI 452
                 556669*******9977777766 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 4.4e-05
                 HHHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgal 27 
                 +  l  +lsD + +VR aA+ a+g++
  KKY15779.1 471 MTGLAIMLSDMEEKVRLAAVDAVGRF 496
                 6668889*****************97 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.0011
                 HHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   4 lllkllsDpspeVReaAakaLgalaev 30 
                  l +  +D+   VRe A++ L+++ +v
  KKY15779.1 520 NLAERVKDKRNAVREKAFEILARIWSV 546
                 688899*****************9876 PP

  == domain 6  score: 1.5 bits;  conditional E-value: 0.078
                  -SSHHHHHHHHHHHHHHHHC CS
        HEAT   11 DpspeVReaAakaLgalaev 30  
                  ++ p+ R  Aak++ +l+++
  KKY15779.1 1038 SERPRLRLLAAKSILKLCSH 1057
                  57899*************86 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.67     4e+03       9      23 ..      85      99 ..      79     111 .. 0.61
   2 !   16.4   0.5   1.5e-06     0.009      10      85 ..     435     538 ..     427     541 .. 0.67
   3 !   16.5   0.2   1.3e-06     0.008       6      59 ..     475     544 ..     471     565 .. 0.78
   4 ?   -3.6   0.0       2.5   1.5e+04      45      63 ..     738     759 ..     727     772 .. 0.41
   5 ?   -1.6   0.2      0.62   3.7e+03       7      68 ..     873     933 ..     865     949 .. 0.55
   6 ?   -1.9   0.0      0.76   4.5e+03      43      68 ..    1039    1065 ..    1037    1099 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.67
      HEAT_2  9 endpdpevrraaira 23
                  ++d  vr++a+ +
  KKY15779.1 85 LAHKDRGVRARAAVC 99
                244445555554444 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.5e-06
      HEAT_2  10 ndpdpevrraairaLg.............rignpealpaLvellededpavRraaaeaLgaig................dpealpaLkellddddddvv 79 
                 +d +p vr a i a+              ++ +++++  L  +l+d ++ vR aa++a g++g                + ++l+ L+e+++d++++v 
  KKY15779.1 435 QDRSPSVRTAWIAAISrilltsagghgldSLEETRLMTGLAIMLSDMEEKVRLAAVDAVGRFGftdivnrvaaqggvsqEGSVLANLAERVKDKRNAV- 532
                 58888888888888884444444444443444457788888899999999999999999999766665555544444323348999999998777665. PP

      HEAT_2  80 ReaAae 85 
                 Re+A e
  KKY15779.1 533 REKAFE 538
                 777755 PP

  == domain 3  score: 16.5 bits;  conditional E-value: 1.3e-06
      HEAT_2   6 qalendpdpevrraairaLgrignp................ealpaLvellededpavRraaaeaLgaig 59 
                 +++ +d +++vr aa++a gr+g +                ++l+ L e ++d+  avR+ a e L++i 
  KKY15779.1 475 AIMLSDMEEKVRLAAVDAVGRFGFTdivnrvaaqggvsqegSVLANLAERVKDKRNAVREKAFEILARIW 544
                 5566999*************88888667777777777777777**********************99873 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 2.5
      HEAT_2  45 pavRraaaeaLgai...gdpea 63 
                  ++   a++ L +    g p +
  KKY15779.1 738 YRTVTKAIKELTRRvqnGPPGT 759
                 4444444444432222222222 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 0.62
      HEAT_2   7 alendpdpevrraairaLg...rignpealpaLvellededpavRraaaeaLgaigdpealpaLk 68 
                 ++  +++p  +++a+  L    ++++  a++++ ++l+d       a  +aL+++++ + +++L 
  KKY15779.1 873 YALYSSSPRAAKHAVTILMhttEKKEMYARDLMSKALKD----FSLASTHALARLATISQISLLS 933
                 555566667777777777654444444555555555543....4444555555555555555555 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 0.76
      HEAT_2   43 edpavRraaaeaLgaigd.pealpaLk 68  
                  e p+ R  aa+++ ++ + ++a++ L 
  KKY15779.1 1039 ERPRLRLLAAKSILKLCShKRACEELV 1065
                  566777777776666543255555544 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       0.7   4.2e+03      23      42 ..     123     137 ..     116     139 .. 0.79
   2 ?   -0.8   0.1       0.4   2.4e+03      18      52 ..     340     370 ..     338     373 .. 0.72
   3 ?    7.7   0.1   0.00085       5.1       1      54 [.     439     495 ..     439     496 .. 0.84
   4 ?    8.6   0.1   0.00044       2.6       2      55 .]     484     543 ..     483     543 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.7
     HEAT_EZ  23 qplvpeilpaLlalLnddsd 42 
                  ++++ i+paL+     d++
  KKY15779.1 123 TTFITSIIPALA-----DPS 137
                 578999*****9.....765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.4
     HEAT_EZ  18 epellqplvpeilpaLlalLnddsd.eVRaaAagaL 52 
                 +p+ l+ ++p++ ++L+      ++ + R  A  ++
  KKY15779.1 340 CPDVLHNVIPQLEAELG-----AESvPLRILATETI 370
                 89999999999999998.....55555566665555 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.00085
     HEAT_EZ   1 wrvRraAawaLGr...laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 + vR a ++a++r     +g+  l++++ ++++  L+ +L+d + +VR aA+ a g+
  KKY15779.1 439 PSVRTAWIAAISRillTSAGGHGLDSLEETRLMTGLAIMLSDMEEKVRLAAVDAVGR 495
                 568888899999995544455555888***************************998 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.00044
     HEAT_EZ   2 rvRraAawaLGr......laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                  vR aA+ a+Gr      +  ++++    +   +l+ L+ + +d+  +VR++A   L+++
  KKY15779.1 484 KVRLAAVDAVGRfgftdiVNRVAAQGGVSQEGSVLANLAERVKDKRNAVREKAFEILARI 543
                 59*************9996666666666677899*******************9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       982  (0.0547716); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.09u 0.34s 00:00:01.43 Elapsed: 00:00:00.57
# Mc/sec: 8241.50
//
Query:       KKY15780.1  [L=581]
Description: hypothetical protein UCRPC4_g06133 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-52  178.3   1.2    3.7e-52  177.6   1.2    1.4  1  Arylsulfotran_2  Arylsulfotransferase (ASST)
    8.3e-19   67.7   2.1    3.7e-18   65.6   2.0    2.0  2  Arylsulfotrans   Arylsulfotransferase (ASST)
  ------ inclusion threshold ------
      0.033   14.7   0.1       0.43   11.1   0.0    2.3  2  S-l_SbsC_C       S-layer protein SbsC C-terminal domain
       0.14   12.3   3.6       0.15   12.2   0.5    2.5  3  Laminin_G_3      Concanavalin A-like lectin/glucanases superf


Domain annotation for each model (and alignments):
>> Arylsulfotran_2  Arylsulfotransferase (ASST)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.6   1.2   8.2e-56   3.7e-52       2     294 ..     103     400 ..     102     405 .. 0.86

  Alignments for each domain:
  == domain 1  score: 177.6 bits;  conditional E-value: 8.2e-56
  Arylsulfotran_2   2 vqlLkdesvitnwegdglkGfGyGt..ltil.....dssyeeiwkvtldgd...fvtpdsesesyidhHeseitedgtilvtavnvtqadltsv 85 
                      vq  ++++ it+w g+ +  fG G+  +++      +  ++ ++  +ld +   f+  ++  +   d+He+ it+ gt l+t+++   adlt+ 
       KKY15780.1 103 VQSYQGNDYITFWTGTDNGTFGEGHylMVKHlrngfNIANRRLIIEQLDSSyeiFKIVKPADNLTGDLHEFRITDTGTALMTIYERRAADLTVY 196
                      677789999999999998877777632333211111333333333444444556555555557788*************************876 PP

  Arylsulfotran_2  86 ggekdgwvldsliyeidietnevlfrwSalehvdeipleeskaplgdfgrdeskpedyfHlNsvekfedgdyLiSlrelsslflirpkegkvlW 179
                      g   +gw+ dsl++eid +t++ lf+w a++h + ++++   ap+ +fgr+ ++ +d+fH+Ns++k ++g+yLiS+r+++ l +i+ ++g+++W
       KKY15780.1 197 GI-PQGWIYDSLFQEIDLATGDLLFQWRASDHYAINESR---APIRSFGREPTNGFDFFHINSIDKDNAGNYLISSRYMCALTYIN-QKGEIIW 285
                      65.69****************************999888...********************************************.******* PP

  Arylsulfotran_2 180 qlqGpkg..gdfel.dnstfsrQHdariveetedkivislfnNentdt.nerepttglildvdlqnkevtllrklkdaedeissvsqGsyqllp 269
                      ql G k+  +d +    ++f++QH+a  +    ++ ++ +f+N + d+ +++e ++gl++ +d +n+++tl+++   a + + ++sqGs+q+l 
       KKY15780.1 286 QLGGDKNnfTDLSGgAATNFTWQHHASWY----ENNSLTIFDNGAYDKlHTAEYSRGLLVGLDYANMTATLVKDYV-APQHLLVPSQGSMQMLQ 374
                      *****986667776999************....999*******888888**************************9.****************9 PP

  Arylsulfotran_2 270 n.ghvlveegsigrveeydangkivl 294
                        g+vlv++g ++  +e++a+g++  
       KKY15780.1 375 DtGNVLVGWGHTPAYTEFSADGEVLC 400
                      89********************9865 PP

>> Arylsulfotrans  Arylsulfotransferase (ASST)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   2.0   8.2e-22   3.7e-18      28     344 ..      77     389 ..      73     428 .. 0.79
   2 ?   -3.7   0.0      0.94   4.2e+03      24      44 ..     491     511 ..     472     520 .. 0.66

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 8.2e-22
  Arylsulfotrans  28 knnlivDtkGevrWyldqdkisdnk..................lkrlkngkllilsgqklaefdllGrvikeyrlpggy............idlh 92 
                     + ++i+D+kG++ W+ ++  + ++                      +++g++l++++   + f++  r +   +l+ +y            +   
      KKY15780.1  77 PGPIILDKKGDLVWMETKWGQAMDLkvqsyqgndyitfwtgtdNGTFGEGHYLMVKHL-RNGFNIANRRLIIEQLDSSYeifkivkpadnlTGDL 170
                     678999********87776666654588888888888766655444455555555552.234555555555555555556666666666557777 PP

  Arylsulfotrans  93 Hdivelpngnllvlvaeenykrk..dgkkvktveDtii.evd.ktGkvvkewdlakiLdpyrdallkaakapfgdiagvgagrdWlHiNsveyde 183
                     H+   ++ g+ l++  e++  +    g  +  + D +  e+d  tG+++ +w++ ++    ++    a  + fg  ++  +g d +HiNs++ d+
      KKY15780.1 171 HEFRITDTGTALMTIYERRAADLtvYGIPQGWIYDSLFqEIDlATGDLLFQWRASDHYAINES---RAPIRSFGREPT--NGFDFFHINSIDKDN 260
                     9*************99888877645556677788877549*****************855555...334577888888..99**********888 PP

  Arylsulfotrans 184 kddsiivSsRhqsavvkidyrtkkvkWilgdkegwekelqkklLtpvdskGkkidleegdfdwtwgqHtavlipngstiiellvFDNgdgrskeq 278
                       ++ ++SsR++ a+  i+ +++++ W lg ++    +     L+               +++tw+ H+ ++ +n+     l++FDNg + +   
      KKY15780.1 261 -AGNYLISSRYMCALTYIN-QKGEIIWQLGGDKNNFTD-----LSG-----------GAATNFTWQHHASWYENNS-----LTIFDNGAYDKLHT 332
                     .888999************.*********998865555.....333...........5577799999999999998.....***********994 PP

  Arylsulfotrans 279 pallspkdnySraveYkideknmTveqvweygkerGaefYSsivssveylkdkgnilvdsgaagld 344
                             +ySr+    +d  nmT++ v  y  ++  +   +  +s+++l+d+gn+lv  g +  +
      KKY15780.1 333 -----A--EYSRGLLVGLDYANMTATLVKDYVAPQ--HLLVPSQGSMQMLQDTGNVLVGWGHTPAY 389
                     .....3..5************************96..9999*****************99987655 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.94
  Arylsulfotrans  24 wdekknnlivDtkGevrWyld 44 
                      +e  ++ +vD++G+v  y +
      KKY15780.1 491 VQEYLRVAAVDQSGNVLAYSK 511
                     556666778888888877765 PP

>> S-l_SbsC_C  S-layer protein SbsC C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.19   8.6e+02      43      66 ..     106     131 ..      98     136 .. 0.79
   2 ?   11.1   0.0   9.6e-05      0.43      56      80 ..     487     511 ..     474     513 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.19
  S-l_SbsC_C  43 aaa.aytsgtdit.ditatagqyill 66 
                  +  +y++ ++ t + t+ +g+y+++
  KKY15780.1 106 YQGnDYITFWTGTdNGTFGEGHYLMV 131
                 333389999999999*********98 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 9.6e-05
  S-l_SbsC_C  56 itatagqyillyeVDasgkivayas 80 
                 +  ++ +y+ +++VD+sg++ ay++
  KKY15780.1 487 VPDEVQEYLRVAAVDQSGNVLAYSK 511
                 5567899****************86 PP

>> Laminin_G_3  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1         2   9.1e+03      51      66 ..     106     121 ..      89     125 .. 0.67
   2 ?   -0.9   0.0      0.37   1.7e+03     127     143 ..     161     177 ..     136     181 .. 0.81
   3 ?   12.2   0.5   3.4e-05      0.15      49     104 ..     274     329 ..     249     344 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2
  Laminin_G_3  51 ldgsgrlrfsvnagng 66 
                  ++g+++++f+++++ng
   KKY15780.1 106 YQGNDYITFWTGTDNG 121
                  3455577788777775 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.37
  Laminin_G_3 127 ggddpfdGlidevriyn 143
                  + +d+++G+++e+ri +
   KKY15780.1 161 KPADNLTGDLHEFRITD 177
                  557899********987 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 3.4e-05
  Laminin_G_3  49 lgl.dgsgrlrfsvnagngaeesvtsgasvpageWtHvavtydggtlrlYvNGvevg 104
                  l++ ++ g++ +++++++++ +++ sg++++  +W+H a  y++++l+++ NG+ ++
   KKY15780.1 274 LTYiNQKGEIIWQLGGDKNNFTDL-SGGAATNFTWQHHASWYENNSLTIFDNGAYDK 329
                  33338889*******998666666.888899**********************9766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.51
# Mc/sec: 3459.44
//
Query:       KKY15781.1  [L=418]
Description: putative serine-threonine rich [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.16   12.0   0.5       0.71    9.9   0.5    2.1  1  Cu_bind_like  Plastocyanin-like domain


Domain annotation for each model (and alignments):
>> Cu_bind_like  Plastocyanin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.5     4e-05      0.71      16      84 .]     235     311 ..     228     311 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 4e-05
  Cu_bind_like  16 ktFrvGDtLlFkydsevhsvvevskkeyekCetskpleeft..........tgsdkvtLtkegsnyFisgvpghCkkGq 84 
                    +  vGD++ F + ++ h+v++ s+++   C +sk l +            +     + ++    +  + ++ghC +G+
    KKY15781.1 235 ISAAVGDMVQFVFMAQNHTVTQSSFTS--PCVSSKGLDSGFvanannsispAPYLVFQVQTADPIWMYCRQTGHCGQGM 311
                   5668****************9987653..46555544332223444444433334445555566677777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1727  (0.0963244); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.52
# Mc/sec: 2433.57
//
Query:       KKY15782.1  [L=278]
Description: putative allantoin permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-41  141.5  14.1    4.1e-41  141.2  14.1    1.0  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.2  14.1   2.3e-45   4.1e-41     232     438 ..       4     216 ..       1     217 [. 0.96

  Alignments for each domain:
  == domain 1  score: 141.2 bits;  conditional E-value: 2.3e-45
  Transp_cyt_pur 232 kssvkiqlvavpllftlllligilvaaaakaayganawspldilakfdet...agvllililvalaqlgvnisanllsagldlaallPkkinikr 323
                      ss++++++ +p+  + +++igi+v++a++++yg+ +w+p+ i+a++d     a+ +++ +   +aql vnisan++  ++dl+ l+Pk+ini+r
      KKY15782.1   4 PSSAYTMAIWFPVICSWIAIIGIVVTSATQVIYGTYIWDPVAIVAEWDGPsgrAAAFFAGLSWVIAQLCVNISANVITVANDLTSLFPKYINIRR 98 
                     5788899999****************************************9******************************************** PP

  Transp_cyt_pur 324 gsliaavia.lvivpwkllssssklftaflsllavflspvagviiadyfvvrrgylklaalytrrrgsaYwyrkgvNwravaayivGiaaglvgv 417
                     g+liaav++  ++vpwk l s+s+  ++f+  l++fl p + ++i d+++v r++l + aly   + ++Y y+ g+Nwrav+a++v++++ l+g+
      KKY15782.1  99 GALIAAVVGgWIMVPWKILTSASS-LLTFMNNLGIFLAPTMSILITDFWIVHRRRLDVPALYQ--PHGRYRYTRGFNWRAVVAFLVALVPLLPGM 190
                     ********63789***********.999***********************************..****************************** PP

  Transp_cyt_pur 418 agsvg.....ikvvkgaeklfdlsyl 438
                     a +v        +++ ++ +f+++y+
      KKY15782.1 191 ANAVNssieiGGLIHLVDMNFYYGYF 216
                     *9999888888899999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.32s 00:00:00.82 Elapsed: 00:00:00.49
# Mc/sec: 1702.38
//
Query:       KKY15783.1  [L=272]
Description: hypothetical protein UCRPC4_g06136 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.009   16.2   0.0      0.032   14.5   0.0    1.9  1  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.8e-06     0.032      15      79 ..      62     122 ..      56     176 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.8e-06
                 EEETT...TEEEEE-HHHHHHH-HHHHHHHTSTTTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC- CS
         BTB  15 lvvgd...gkefkahkavLaarSpyFkalftskeieessvseielddvepeafealLefiYtgeleit 79 
                 lvvg    ++++ ah a+La  Sp F a + +++      + ie+ d   +a++ +L++ Ytge    
  KKY15783.1  62 LVVGSdneQTTITAHSAILA-KSPWFAAKIRETP------TAIEMHDEALDAVACFLQYQYTGEYFPR 122
                 555555568899******96.8**********92......36999******************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1829.14
//
Query:       KKY15784.1  [L=621]
Description: putative leukotriene a4 hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-44  150.9   0.2      5e-44  150.5   0.2    1.2  1  Peptidase_M1     Peptidase family M1 domain
    2.4e-34  117.8   0.0    4.4e-34  117.0   0.0    1.5  1  Leuk-A4-hydro_C  Leukotriene A4 hydrolase, C-terminal
    5.2e-28   98.5   0.3    8.2e-28   97.8   0.3    1.3  1  Peptidase_M1_N   Peptidase M1 N-terminal domain
  ------ inclusion threshold ------
      0.017   14.8   0.1       0.19   11.4   0.1    2.2  2  Peptidase_MA_2   Peptidase MA superfamily
      0.061   13.4   0.0       0.11   12.5   0.0    1.4  1  DUF916           Bacterial protein of unknown function (DUF91
      0.073   12.8   0.0       0.12   12.2   0.0    1.2  1  Peptidase_M48    Peptidase family M48
       0.44   10.9   1.9        6.4    7.2   1.9    2.5  1  Peptidase_M61    M61 glycyl aminopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   0.2   1.9e-47     5e-44       1     206 [.     237     438 ..     237     456 .. 0.86

  Alignments for each domain:
  == domain 1  score: 150.5 bits;  conditional E-value: 1.9e-47
                   HHHHHHHHHHHHHHHHHTS--SSSEEEEEEE.SSTTSSEEEETTEEEEEGGGC-SSTTTS-HHHHHHHHHHHHHHHHHHHBTTTEEESSGGGGHHHH CS
  Peptidase_M1   1 yalevtkkllefleeyfkvpYplpkldlval.pdfsagAMEnwglityreelllvdpenssesdkrsvaeviaHElaHqWfGnlVtmkwWddlwLnE 96 
                   ++le +++ + +++e++ +pY++ ++++++l  +f++g+MEn+  ++++++ +  d         r++++viaHElaH+W+GnlV++++W+++wLnE
    KKY15784.1 237 WELERDTESFIQVAEKIVYPYAWGQYNVLILpGSFPYGGMENPIFTFATDTIISKD---------RENVDVIAHELAHSWSGNLVSNASWEHFWLNE 324
                   79999**************************669****************999999.........8999**************************** PP

                   HHHHHHHHHHHHHHSCCCHCHHHHHHHCHHHHHHHHTSTTHHHSS...GG-GSHHHHHHTSSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHCT CS
  Peptidase_M1  97 Gfatyleylildklepewevseqllleeveealsedaldeshpit...qevekpseidevFdsiaYeKGasllrmlekllgeevFqkglksYlkefk 190
                   G+++yle++i+  +++e +   + ++     + s +  +e+h++t   +   k +++d++F+si+YeKG+ +l +lekll++ +F+k++  Y+++ k
    KKY15784.1 325 GWTVYLERRIIAGIHGEPHRDFSAIIGWKALTDSIERFGEDHEFTkliVD-LKGKDPDDAFSSIPYEKGFHFLYYLEKLLTKPKFDKFIPYYFTKWK 420
                   ***************96663333334444456667778888888833223.3588****************************************** PP

                   TEEE-HHHHHHHHHH..C CS
  Peptidase_M1 191 yknaetedlwdalee..a 206
                    k++++ d+  ++ e  a
    KKY15784.1 421 GKSLDSYDFKATILEffA 438
                   *********999988552 PP

>> Leuk-A4-hydro_C  Leukotriene A4 hydrolase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.0   0.0   1.7e-37   4.4e-34       1     113 []     507     619 ..     507     619 .. 0.99

  Alignments for each domain:
  == domain 1  score: 117.0 bits;  conditional E-value: 1.7e-37
                      --HHHHHHHHHHHHTT-GGG-HHHHHHHHHHTIIIT---HHHHHHHHHHHHHTT-GGGHHHHHHHTTT---HHHHHHHHHHHHTT-HHHHHHHH CS
  Leuk-A4-hydro_C   1 fssnqkvlfLekLlekekplpaekleaLdelYklseskNaeirlrwlqlalkakyeeavpevaeflgsqGrmkfvrplYraLnkvdrdlAketF 94 
                      fssnq++++Le++l + +pl+++ ++ L+++Y+l++s+N+e+ +r++q+ l a++ ++++ ++++l+s+GrmkfvrplY++L  +d++lAk++F
       KKY15784.1 507 FSSNQLIVLLERILLFPTPLHPSSSHLLGTTYSLTSSSNVELTSRYCQTGLVAHDPTVLEPTKQILKSVGRMKFVRPLYKKLRDFDENLAKSVF 600
                      89******************************************************************************************** PP

                      HHHGGGS-HHHHHHHHHHT CS
  Leuk-A4-hydro_C  95 ektkdfyhpiarklvekdL 113
                      e++k+fyhpi+r +vekdL
       KKY15784.1 601 EENKNFYHPICRGMVEKDL 619
                      *****************98 PP

>> Peptidase_M1_N  Peptidase M1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.3   3.2e-31   8.2e-28       8     186 .]      28     206 ..      17     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 3.2e-31
                     EEEEETTTTEEEEEEEEEEEES..S-ECEEEEEESSEEEECEEEEECTTCTCEEEEEEEECTTTTC...EEEEECCEEETTCEEEEEEEEEEE-B CS
  Peptidase_M1_N   8 dlkidlkektfkGsvtitlqlk..eatseivldakdlkiksvslsaevksesvkidfkieqkdeel...ltiklkeslqqtskytLeieyegeln 97 
                     +++i+++++ + G+v  +l+ +  ++ +ei+ld+++l+i      ++ k +++k+++++  + e +   l i+l++s ++ s++ ++i   +  +
      KKY15784.1  28 NFDISFEQQRLIGNVVLRLESVsdSECKEIILDTSYLDI------KDIKVDKSKVKWSLLPRLEPYgeaLNIELEKSFDKGSTVDVDISLAT--T 114
                     68999****************999999************......666666667777666555554444*******9998888888888888..* PP

                     SSSSEEEEEEEEE.TSCEEEEEEEE-TTTTGGGTS-B--STTSEBEEEEEEEEETTSEEEESSECCCEEEET.TCEE..EEEEEEEESBEGGG CS
  Peptidase_M1_N  98 dklaGlykstYtd.kgekkvvvvTqfeatdARsafPCfDePsvKAtftisikapkeetalSnmpeeesekle.ngqk..iteFeqtpkmstYL 186
                     +++++l+  t ++ +++k +++++q++a++ARs+fPC+D+P+vK+t +++i++p + ++ S++++++ +++e ng k  ++ F+q++++++YL
      KKY15784.1 115 KSCTALQWLTPEQtSNKKHPYMFSQCQAIHARSIFPCQDTPDVKSTIDFNITSPLP-VIASGIEVKNASEKEaNGNKptTYSFQQKLPIPAYL 206
                     *******5554445999***************************************.999***988766666566666699***********8 PP

>> Peptidase_MA_2  Peptidase MA superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.14   3.5e+02      17      55 ..     128     167 ..     116     182 .. 0.77
   2 ?   11.4   0.1   7.4e-05      0.19      68     105 ..     297     333 ..     238     338 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.14
  Peptidase_MA_2  17 lkdkvalyiydsasdlqsamvfpaewtggvayt.dfnvia 55 
                      ++k   y++++++++ +  +fp + t  v  t dfn+ +
      KKY15784.1 128 TSNKKHPYMFSQCQAIHARSIFPCQDTPDVKSTiDFNITS 167
                     56677779*******************9996554999754 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 7.4e-05
  Peptidase_MA_2  68 ravvhelahkvtnqitanpyndlpvwlneglsmyaegn 105
                       ++helah  ++++ +n   +   wlneg ++y e  
      KKY15784.1 297 DVIAHELAHSWSGNLVSNASWE-HFWLNEGWTVYLERR 333
                     4799**************9776.58*********9865 PP

>> DUF916  Bacterial protein of unknown function (DUF916)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.4e-05      0.11      29     119 ..      89     179 ..      66     180 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.4e-05
      DUF916  29 qelevkikNssdkeitveitvntAvTndnGvidYskskekkdkslkvslselvkipkeitlpakesktvklkikmPkeefdGvilGGiyve 119
                 + l+++++ s dk  tv++++  A+T +  ++++   +++++k+ ++ +s+++ i+ +   p + + +vk +i+ + ++   vi+ Gi+v+
  KKY15784.1  89 EALNIELEKSFDKGSTVDVDISLATTKSCTALQWLTPEQTSNKKHPYMFSQCQAIHARSIFPCQDTPDVKSTIDFNITSPLPVIASGIEVK 179
                 5689999999**********************************************88889999999999999999999999999999886 PP

>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.5e-05      0.12      38      85 ..     271     316 ..     238     322 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.5e-05
                    EEEESSS-E.EEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHHHH CS
                    xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48  38 Falgggknk.rivltdgLlkqllseeelaaVlGHElGHikhrhsvvsli 85 
                    F +gg +n  + + td+++    +++e   V++HEl+H  ++  v +++
     KKY15784.1 271 FPYGGMENPiFTFATDTII---SKDRENVDVIAHELAHSWSGNLVSNAS 316
                    8899999999999999***...8999999*********99988877765 PP

>> Peptidase_M61  M61 glycyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.9    0.0025       6.4       3      49 ..     296     331 ..     294     341 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0025
                    HHHHHHHHHHTTBTTTB-BGGGSS---SS----STHHHHTHHHHHHH CS
  Peptidase_M61   3 lgllaHEyfHsWnvkrirPaelepfdyekenytellwvaEGlTsYyg 49 
                    ++++aHE+ HsW ++ +  a+ e             w+ EG+T Y++
     KKY15784.1 296 VDVIAHELAHSWSGNLVSNASWE-----------HFWLNEGWTVYLE 331
                    6899********99876655554...........4566666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 4092.48
//
Query:       KKY15788.1  [L=512]
Description: putative pre-mrna splicing [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-29  102.1  22.9    1.7e-07   31.8   0.1    7.7  7  WD40         WD domain, G-beta repeat
    3.7e-15   55.2   4.9    8.8e-15   54.0   4.9    1.7  1  PRP4         pre-mRNA processing factor 4 (PRP4) like
    1.3e-09   38.2   0.0      0.059   13.7   0.0    5.4  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.096   12.0   0.0         11    5.3   0.0    2.9  3  Nbas_N       Neuroblastoma-amplified sequence, N terminal


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.016        72      15      36 ..     182     204 ..     150     206 .. 0.78
   2 !   10.5   0.4    0.0002       0.9       4      38 .]     213     263 ..     210     263 .. 0.76
   3 !   31.8   0.1   3.8e-11   1.7e-07       3      38 .]     269     305 ..     267     305 .. 0.93
   4 !   17.5   0.0   1.2e-06    0.0055       8      38 .]     316     347 ..     309     347 .. 0.89
   5 !   16.5   0.5   2.6e-06     0.012       2      38 .]     352     389 ..     351     389 .. 0.90
   6 ?    2.8   0.0     0.055   2.4e+02      20      37 ..     445     462 ..     394     463 .. 0.67
   7 !   27.4   2.5   9.6e-10   4.3e-06       3      37 ..     469     504 ..     467     504 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.016
                 EEE.EETTSSEEEEEETTSEEEE CS
        WD40  15 sla.fspdgawlasGsdDgtvri 36 
                 s+a fspd +++a+G + g +++
  KKY15788.1 182 SIArFSPDASMIAAGNWGGGIKL 204
                 4557**********988887776 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0002
                 EEEEESSSS.EEEEEEETTSSE...........EEEE.....ETTSEEEEEE CS
        WD40   4 lrtltGHss.vtslafspdgaw...........lasG.....sdDgtvriWd 38 
                  rtl+GH++ v ++++ p ++            +asG     + ++ v +W+
  KKY15788.1 213 KRTLRGHTGiVGGISWFPGSTIpssgvssssvnIASGaggqgG-KCDVNLWN 263
                 689****6648****9999999999977777777775332314.99999997 PP

  == domain 3  score: 31.8 bits;  conditional E-value: 3.8e-11
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +l tl+GH + v+ + f+p+g++las+s D t r+Wd
  KKY15788.1 269 PLATLEGHtDRVCRVEFHPSGKYLASASFDTTWRLWD 305
                 799*****666****************99*******9 PP

  == domain 4  score: 17.5 bits;  conditional E-value: 1.2e-06
                 ESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 +GHs  v  + f++dg++lasG+ D   riWd
  KKY15788.1 316 EGHSRqVFTVNFNQDGSLLASGGFDSMGRIWD 347
                 59*447****************99*******9 PP

  == domain 5  score: 16.5 bits;  conditional E-value: 2.6e-06
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++ +l+GH   v +l++  dg  ++sG  Dg v+ Wd
  KKY15788.1 352 RTVMILDGHiREVFALDWGYDGYRVLSGAGDGWVKCWD 389
                 67899****888****9***********55*******9 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.055
                 TTSSEEEEEETTSEEEEE CS
        WD40  20 pdgawlasGsdDgtvriW 37 
                 + g++++s++ D++v i+
  KKY15788.1 445 KKGTFFVSSGFDKNVNIF 462
                 445667766669999987 PP

  == domain 7  score: 27.4 bits;  conditional E-value: 9.6e-10
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 + ++l+GH ++v s ++s d++w+as++ D+tv++W
  KKY15788.1 469 LAKSLSGHsGNVLSTDVSADSKWIASSGHDRTVKLW 504
                 5689****655988888*******98777******* PP

>> PRP4  pre-mRNA processing factor 4 (PRP4) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   4.9     2e-18   8.8e-15       1      29 []      53      81 ..      53      81 .. 0.98

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 2e-18
        PRP4  1 VrrrLRelGEPitLFGEthadRreRLrkL 29
                Vr+rLRelG+PitLFGE++ dRr+RLr+L
  KKY15788.1 53 VRARLRELGQPITLFGEGPGDRRDRLREL 81
                9**************************98 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.5   6.9e+03      51      64 ..      42      55 ..      27      67 .. 0.72
   2 ?    3.0   0.0     0.028   1.3e+02      23      71 ..     164     211 ..     156     230 .. 0.78
   3 !   10.5   0.0   0.00013      0.56      35      71 ..     274     310 ..     260     314 .. 0.86
   4 !   13.7   0.0   1.3e-05     0.059      35      91 ..     316     371 ..     312     372 .. 0.91
   5 !    7.3   0.1    0.0013       5.9      39      89 ..     362     411 ..     356     414 .. 0.92
   6 ?   -0.0   0.0      0.25   1.1e+03      47      81 ..     444     478 ..     430     506 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.5
  ANAPC4_WD40 51 klLavaysdgevrl 64
                   +av ++dg+vr 
   KKY15788.1 42 AAIAVPTDDGKVRA 55
                 56788888888875 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.028
  ANAPC4_WD40  23 RlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  Rl+g  +++  + + ++ v+  +++pd +++a +   g ++lld+ + +
   KKY15788.1 164 RLQGFDLYGS-QIAGERPVSIARFSPDASMIAAGNWGGGIKLLDVPNLD 211
                  5555555655.667788899999*********************98765 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00013
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  +++  +v  ++++p+gk La a  d++ rl d+e+++
   KKY15788.1 274 EGHTDRVCRVEFHPSGKYLASASFDTTWRLWDVETTT 310
                  567789999*************************976 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 1.3e-05
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWge 91 
                  ++++++v  +++++dg+lLa +  d+  r+ d  +g++v  l+ +  + v  l+Wg 
   KKY15788.1 316 EGHSRQVFTVNFNQDGSLLASGGFDSMGRIWDLRTGRTVMILDGHIRE-VFALDWGY 371
                  67788999**********************************999995.99999985 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.0013
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  +ev +L W  dg     +  dg v+  d+   + v  + +++ + v+ l+W
   KKY15788.1 362 REVFALDWGYDGYRVLSGAGDGWVKCWDIRAVREVGGIGAHKGN-VSDLKW 411
                  68999************************************995.**9999 PP

  == domain 6  score: -0.0 bits;  conditional E-value: 0.25
  ANAPC4_WD40  47 kpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                   ++g++++ +  d +v++++a +  + +sls +s 
   KKY15788.1 444 TKKGTFFVSSGFDKNVNIFSADDWSLAKSLSGHSG 478
                  56899999999999999999999988888887776 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0024        11     214     265 ..     163     214 ..     140     220 .. 0.83
   2 ?    2.2   0.0     0.021        92     228     260 ..     276     308 ..     266     321 .. 0.89
   3 ?    0.3   0.0      0.08   3.6e+02     230     259 ..     320     349 ..     308     355 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0024
      Nbas_N 214 lkllslklysrkaeekdgvfkmslspdgtllavihfsgklsiwdipslkqrg 265
                  +l+ + ly  +   +  v    +spd +++a+  + g + + d+p l ++ 
  KKY15788.1 163 ERLQGFDLYGSQIAGERPVSIARFSPDASMIAAGNWGGGIKLLDVPNLDEKR 214
                 47888999999988889999999************************98775 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.021
      Nbas_N 228 ekdgvfkmslspdgtllavihfsgklsiwdips 260
                   d v ++ + p g  la   f     +wd+ +
  KKY15788.1 276 HTDRVCRVEFHPSGKYLASASFDTTWRLWDVET 308
                 57999*************************975 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.08
      Nbas_N 230 dgvfkmslspdgtllavihfsgklsiwdip 259
                   vf + +  dg+lla   f     iwd+ 
  KKY15788.1 320 RQVFTVNFNQDGSLLASGGFDSMGRIWDLR 349
                 56999****************999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3260.26
//
Query:       KKY15789.1  [L=633]
Description: putative fumarate reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-79  268.6   0.3    1.2e-79  268.3   0.3    1.1  1  FAD_binding_2  FAD binding domain
    4.1e-21   74.9   0.2    2.2e-19   69.3   0.0    3.5  4  Cyt-b5         Cytochrome b5-like Heme/Steroid binding domain
    4.3e-13   49.6   0.4    7.9e-13   48.7   0.4    1.4  1  DAO            FAD dependent oxidoreductase
    2.7e-10   40.2   0.8    8.8e-10   38.5   0.8    1.8  1  FAD_oxidored   FAD dependent oxidoreductase
    3.5e-08   33.1   0.3    1.2e-07   31.3   0.2    1.8  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.1e-07   31.4   0.1     0.0027   17.0   0.0    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    1.4e-07   31.7   0.6    8.2e-07   29.2   0.5    2.3  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    6.8e-06   25.0   3.4    1.6e-05   23.8   0.7    2.5  2  HI0933_like    HI0933-like protein
    5.7e-05   22.4   1.1      0.026   13.6   0.2    2.2  2  GIDA           Glucose inhibited division protein A
     0.0023   17.2   1.1      0.094   11.9   0.2    2.4  2  Thi4           Thi4 family
     0.0058   16.0   0.3        5.8    6.1   0.0    3.0  3  Amino_oxidase  Flavin containing amine oxidoreductase
     0.0071   15.6   0.2      0.017   14.4   0.2    1.6  1  FAD_binding_3  FAD binding domain
  ------ inclusion threshold ------
       0.01   16.4   2.4        4.4    7.9   0.2    2.7  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      0.055   12.7   0.3       0.11   11.7   0.3    1.5  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.3   0.3   9.7e-83   1.2e-79       2     417 .]       6     446 ..       5     446 .. 0.91

  Alignments for each domain:
  == domain 1  score: 268.3 bits;  conditional E-value: 9.7e-83
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHHH CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeLe 97 
                    viV+G+Gl+GL+AA++   +G +v++++k + fgg+++ +  gi+ +ls++q +++i+ds+++  +dtlk++++ a ++l+++++ ++++a+++L+
     KKY15789.1   6 VIVVGGGLSGLSAAHTVYLNGGSVLLLDKNNFFGGNSTKATSGINGALSRTQVEQNIGDSVKAFYEDTLKSARDKARPDLIKVLTYQSAAAIEWLQ 101
                    9*********************************************************************************************** PP

                    HT.T----BCCTSSB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHHHTCT......EEEEESEEEEEEEECTTEEEEEEEEETTTTC CS
  FAD_binding_2  98 el.gvpfsrtedgpvdvrelGglsatartlhdaadarretlvtghallarlvesarkag......vdfqerteadeLivedgrvtGavvenpesgr 186
                    +   ++++        v++lGg+s + rt++   da++    +g a+ ++l+++++++       v++  +++++e++ e++ vtG+  e     +
     KKY15789.1 102 DVfNLDLTL-------VSRLGGHSFP-RTHR-GHDAKF----PGMAITYALMQRLEELVesdperVQVIKKAKVVEINKEGNTVTGVKYE---YNG 181
                    997888888.......**********.****.888876....666666666666655545556************************999...555 PP

                    EEEEEESEEEE-----GG...............GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTB...B--THHHHTT CS
  FAD_binding_2 187 evrirakavvlatgGfgr.....allkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgi...LitealrgeG 274
                    ev++++  vvlatgG+ +     +llk+ ++   + +ttn  ++tGdg+++  + ga+  d  m++vq hPt+lv+++d+      L  ealrgeG
     KKY15789.1 182 EVTSVDGVVVLATGGYAAdfgesSLLKKWRPDTYDLSTTNGTHATGDGHKMLMAIGANDID--MDKVQVHPTGLVDPKDPGSKwkfLAAEALRGEG 275
                    6888999**************************************************9666..************88877666799********** PP

                    -EEE-TTSSBTHGGGS-HHHHHHHHH.HHHHTTTS........CCBEEEE-TT......................SSHHHHHHHSHHHHHHHHHCC CS
  FAD_binding_2 275 gilvdkdGrrFmnelasrdvvsrailekeiaeggs........eanvyldash.....................gldaegleatleaineeaangl 341
                    g+l+++dG+rF  el +rd vs  ++ ke+++g+         +a+ +ld++                      g+++++l +t+ ++ne+a+ + 
     KKY15789.1 276 GLLLNSDGQRFSDELGHRDYVSGQMW-KEKDKGKWpirlvlnsKASNVLDFHTrhysgrglmkkmtgaelakeiGCGEAALSKTFTEYNEIAEGKK 370
                    **************************.999888887778888877777777779****************************************98 PP

                    T......S-TTTSEEE.........EEEEEEEES-EEEBETTSBESTTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 342 dkdfgrgidpadrpip..gpfyavkvvpaqhytmgGvetdengrvldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                    +++ g++  ++  pi    +f+ + + p  h+tmgG+e++++++vl+++ +p + LYA+Ge a ggvhganrlgG+sl
     KKY15789.1 371 KDPWGKKYFHNF-PIEtnDTFHVALMEPVLHFTMGGMEINDKAEVLNSEAKPFEALYACGELA-GGVHGANRLGGSSL 446
                    866655544433.3446789*******************************************.************98 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.3   1.7e+03      22      47 ..     103     128 ..      99     136 .. 0.78
   2 ?   -1.5   0.0       2.2   2.8e+03      23      42 ..     215     235 ..     211     257 .. 0.73
   3 ?   -0.3   0.0      0.92   1.2e+03      13      48 ..     310     345 ..     299     362 .. 0.78
   4 !   69.3   0.0   1.7e-22   2.2e-19       1      73 [.     553     624 ..     553     625 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.3
                 EEECTTTC.CCSTTCSHHHHTTTTSBB CS
      Cyt-b5  22 VYDvskfl.skhpGgesailkyaGkDa 47 
                 V++++  l s+  Gg+s+ ++++G+Da
  KKY15789.1 103 VFNLDLTLvSRL-GGHSFPRTHRGHDA 128
                 677775552444.9***********98 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.2
                 EECTTTCCCSTTCSH.HHHTT CS
      Cyt-b5  23 YDvskflskhpGges.ailky 42 
                 YD+s   + h +g++  +l++
  KKY15789.1 215 YDLSTTNGTHATGDGhKMLMA 235
                 999999999986654144444 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.92
                 EEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBH CS
      Cyt-b5  13 dlwvairgkVYDvskflskhpGgesailkyaGkDat 48 
                 ++ ++++ k  +v +f  +h  g+++++k  G  + 
  KKY15789.1 310 PIRLVLNSKASNVLDFHTRHYSGRGLMKKMTGAELA 345
                 6667788888889999978889999***99998665 PP

  == domain 4  score: 69.3 bits;  conditional E-value: 1.7e-22
                 EHHHHTTTECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHGGEEEEE CS
      Cyt-b5   1 tleelskhngkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkkylvGkl 73 
                 +lee++khn+k+dlw+a++g V Dv+++l++hpGg +a+ ++ G+Da+e+f+   h+++++ k+  + ++G++
  KKY15789.1 553 SLEEVAKHNKKDDLWIAVKGIVLDVTNWLDEHPGGPQALFSHMGRDASEEFEML-HDDEVIPKYAPNIVIGRV 624
                 589***************************************************.*********999999998 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.4   6.2e-16   7.9e-13       1     207 [.       5     202 ..       5     249 .. 0.71

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 6.2e-16
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHH.HHHHHHHSSTTSEEEEEEEEEESSHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeel.releeelgididyrrtGllslaadeeel 96 
                 +v+++GGG  Gls+A+     g  V+ll+k++++g g S +++  + ++l+ ++    + +   ++++ + ++  ++ +   d  r+ l+ + + + + 
  KKY15789.1   5 RVIVVGGGLSGLSAAHTVYLNGgsVLLLDKNNFFG-GNSTKATSGINGALSRTQ----VEQNIGDSVKAFyEDTLKS-A--RDKARPDLIKVLTYQ-SA 94 
                 59****************99977************.999999999999886333....3356666655544555555.4..356666666665422.36 PP

                 HHHHHHHHHH.HHTTTTEEEEEH.HHHHHHSTTSTTTSEE.EEETTEEEEEHHHHHHHHHHHHHHT..T-EEEESECEEEEEEEETCEEEEE...EECT CS
         DAO  97 ealdkllall.leagldaellda.eevrelepalpgllga.lfypdtgqvdpakltaalaraaeal..Gveilegtevtgleeedgkvwgve...rttp 187
                 +a+ ++l+++ + ++l   l+++       +p  + ++g    +p+   + +++l++ l + +e+    v+++++++v+++++e++ v+gv+   +   
  KKY15789.1  95 AAI-EWLQDVfN-LDL--TLVSRlG--GHSFP--RTHRGHdAKFPG--MAITYALMQRLEELVESDpeRVQVIKKAKVVEINKEGNTVTGVKyeyN--- 180
                 777.88888632.344..4454411..13566..223331244454..666999999999999888667************9988999***76443... PP

                 EEEEEEEE.EEE--GGGHH.HH CS
         DAO 188 gendaada.vVnaaGawsd.ll 207
                 ge++++d  vV+a+G ++  + 
  KKY15789.1 181 GEVTSVDGvVVLATGGYAAdFG 202
                 777666778********98443 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.8   6.9e-13   8.8e-10       2     138 ..       6     190 ..       5     196 .. 0.75

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 6.9e-13
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignkaee..qvvtgiareflerlrq..rgga..........rlkkrskw.n. 82 
                   v+VvGGg++G+ AA +   +G +vlL++++++ GG++t++  +        +  q ++  ++ f+e   +  r++a          + +++ +w + 
    KKY15789.1   6 VIVVGGGLSGLSAAHTVYLNGGSVLLLDKNNFFGGNSTKATSGINGALSRTQveQNIGDSVKAFYEDTLKsaRDKArpdlikvltyQSAAAIEWlQd 102
                   9***********************************9988764443333222456666777777776655443344556666554332355555437 PP

  FAD_oxidored  83 ..............................tfepevakavleeml..aeagvtvllntrlvevekegkriesvtveskegrktirAkv 138
                                                 +    ++ + lee++  + ++v+v+ ++++ve++keg+++++v+ e + + + + + v
    KKY15789.1 103 vfnldltlvsrlgghsfprthrghdakfpgMAITYALMQRLEELVesDPERVQVIKKAKVVEINKEGNTVTGVKYEYNGEVTSVDGVV 190
                   899999***********999999999877766666667777888887668*****************99*****98655566666655 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.2     9e-11   1.2e-07       2     115 ..       5     202 ..       4     214 .. 0.92
   2 ?   -3.9   0.0       4.7     6e+03     268     279 ..     422     433 ..     403     439 .. 0.67

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 9e-11
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHH.HCHHHHHHHHHHHHH......................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx......................................... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcll.skallgvaedaeias......................................... 57 
                  +v+v+GgG  Gl+aa+t+  +g+ v+l+ +++++++g     ++ + g+ +++++++                                         
   KKY15789.1   5 RVIVVGGGLSGLSAAHTVYLNGGSVLLL-DKNNFFGGNSTKaTSGINGALSRTQVEQnigdsvkafyedtlksardkarpdlikvltyqsaaaiewlq 101
                  79**************************.7777777766664779999999999999***************************************** PP

                  ...........................................HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEEESEEEE---EEE- CS
                  ...........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 ...........................................evvkklnqgielllgeevvkidpgkkkvklekkkegdeekiaydklvlAtGsspr 112
                                                             e v++  + ++++++++vv+i ++  +v+  k + + e +  ++ +vlAtG+ + 
   KKY15789.1 102 dvfnldltlvsrlgghsfprthrghdakfpgmaityalmqrleELVESDPERVQVIKKAKVVEINKEGNTVTGVKYEYNGEVTSVDGVVVLATGGYAA 199
                  ******************************************9888888888******9******9999****8888777777777999*****9999 PP

                  BCT CS
                  xxx RF
  Pyr_redox_2 113 dlg 115
                  d+g
   KKY15789.1 200 DFG 202
                  885 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 4.7
                  STTEEE-GGGCT CS
                  xxxxxxxxxxxx RF
  Pyr_redox_2 268 vpgiyaiGDvag 279
                   + +ya+G  ag
   KKY15789.1 422 FEALYACGELAG 433
                  788999999993 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   6.2e-05      0.08     163     215 ..       2      54 ..       1      92 [. 0.74
   2 !   17.0   0.0   2.1e-06    0.0027     206     272 ..     131     202 ..     119     226 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.2e-05
  Pyr_redox_3 163 agqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdie 215
                  +g +v+V+Gg+ S+  aA  ++ +g +V ++++++    ++++    ++    
   KKY15789.1   2 SGSRVIVVGGGLSGLSAAHTVYLNGGSVLLLDKNNFFGGNSTKATSGINGALS 54 
                  6789*****************************99988888777777765543 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 2.1e-06
  Pyr_redox_3 206 psyslkpdienrleelvke..ekikvlfnaevkeikekeeey.kvk.tedgkkvevkddvvlat.Gykpdls 272
                  p + +     +rleelv++  e+++v+++a+v ei+++ +++  vk + +g+ ++v+  vvlat Gy  d+ 
   KKY15789.1 131 PGMAITYALMQRLEELVESdpERVQVIKKAKVVEINKEGNTVtGVKyEYNGEVTSVDGVVVLATgGYAADFG 202
                  5667888899********99999**************99998446624566666678889999857888875 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.5   6.4e-10   8.2e-07       1      40 [.       8      47 ..       8      66 .. 0.91
   2 ?   -1.2   0.0         2   2.5e+03      29      48 ..     112     131 ..     106     148 .. 0.72

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 6.4e-10
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev 40
                   +vG+GlsGl+aA++   +g +vlll+k++ +GG+++ ++ 
     KKY15789.1  8 VVGGGLSGLSAAHTVYLNGGSVLLLDKNNFFGGNSTKATS 47
                   8**********************************98876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2
                    SSSSGGG-EECETTCEECTS CS
  NAD_binding_8  29 drlGGraasyevpgvrvdyg 48 
                    +rlGG++  +++ g+ ++ +
     KKY15789.1 112 SRLGGHSFPRTHRGHDAKFP 131
                    68999999998877554443 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.7   1.3e-08   1.6e-05       2     166 ..       5     198 ..       4     205 .. 0.71
   2 ?    0.1   0.1       0.2   2.6e+02     355     408 ..     401     458 ..     377     459 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.3e-08
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-...HHHHHCG.GGT-EEEETT-SGGGEEES........STTTTHHH...HHHS-HHHHHHHHH CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklg...rKilisG.gGrcNvTnlseepeellsry.....penpkflksa...lsrftnedlialve 87 
                  +viv+GgG +Gl aA ++  +g +Vlll+k++ +g    K ++sG +G +  T  ++++ + ++ +     +  +++ +       ++++ + i++++
   KKY15789.1   5 RVIVVGGGLSGLSAAHTVYLNGGSVLLLDKNNFFGgnsTK-ATSGiNGALSRTQVEQNIGDSVKAFyedtlKSARDKARPDlikVLTYQSAAAIEWLQ 101
                  79*******************************9943234.4566479998888766654444433111112333444443212458*********98 PP

                  ...HTT--EEE-STTEEEETT.-CHH.......HHHHHHHHHHH......HT-EEE-S--EEEEECETTE.EEEEE..TTEEEEES.EEEE----SS CS
  HI0933_like  88 ...elgvelkeedsgrlFpvsdkaed.......ivdallkelke......agvklrletevksvekeedgkfrvkt.kseeelead.klvlAtGGlS 166
                     +l+++l  +  g  Fp++++ +d       i  al+++l+e      ++v++  + +v +++ke + +  vk+  ++e  + d  +vlAtGG +
   KKY15789.1 102 dvfNLDLTLVSRLGGHSFPRTHRGHDakfpgmaITYALMQRLEElvesdpERVQVIKKAKVVEINKEGNTVTGVKYeYNGEVTSVDgVVVLATGGYA 198
                  333589999**********998654333333339999999998744444468***********************9434444444425789***976 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.2
                  EEEEEE-GGG.B-TTT-BBTTSTTEEE-GGGB.SEEE..-TTTHHHHHHHHHHHHHHH CS
  HI0933_like 355 vTaGGVdlke.vssktmeskkvpgLffaGEvl.Dveg..vtGGynlqaAwasgyaAGk 408
                   T+GG +++   +    e+k  + L+ +GE+   v+g   +GG  l  + + g +AG+
   KKY15789.1 401 FTMGGMEINDkAEVLNSEAKPFEALYACGELAgGVHGanRLGGSSLLGCVVYGRVAGN 458
                  58899888651444456789999*******9634776335888888888888888886 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.2   2.1e-05     0.026       2      30 ..       6      34 ..       5      63 .. 0.84
   2 !    7.4   0.0    0.0016         2     110     152 ..     153     198 ..     132     218 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.1e-05
                EEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLith 30
                viV+GgG++G+ AA ++   G +vlL+ +
  KKY15789.1  6 VIVVGGGLSGLSAAHTVYLNGGSVLLLDK 34
                9*************************933 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0016
                 TEEEE.ES-EEEEEECTTEEEEEEETTS-EEEEC..EEEE--TT-B CS
        GIDA 110 nleii.eeeveeliveekkvkgvvtedgetikak..avviatGtfl 152
                  +++i +++v e++ e ++v+gv+ e + ++++   +vv+atG + 
  KKY15789.1 153 RVQVIkKAKVVEINKEGNTVTGVKYEYNGEVTSVdgVVVLATGGYA 198
                 5665515789***9999******9987776665557*******976 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.2   7.4e-05     0.094      18      57 ..       4      42 ..       1      73 [. 0.87
   2 ?    3.5   0.0     0.028        35     202     232 ..     412     442 ..     399     444 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.4e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTT CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersvspGGGa 57
                s v++vG+G sGL+aa+++  + +  v++l+++  +GG +
  KKY15789.1  4 SRVIVVGGGLSGLSAAHTVYLN-GGSVLLLDKNNFFGGNS 42
                679****************999.88999999999999976 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.028
                 HHHHHHECEEETTEEE-THHHHHHHT-EB-- CS
        Thi4 202 daivkktrevvpnlyvaGmevaevdganRmG 232
                 +++++   + ++ ly++G  +  v+ganR+G
  KKY15789.1 412 AEVLNSEAKPFEALYACGELAGGVHGANRLG 442
                 4677888899********************9 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.1    0.0055         7       1      30 [.      13      42 ..      13      54 .. 0.90
   2 !    6.1   0.0    0.0045       5.8     209     258 ..     140     191 ..      67     220 .. 0.72
   3 ?    0.2   0.0      0.28   3.6e+02     329     362 ..     580     612 ..     557     617 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0055
                   HHHHHHHHHHHHTTEEEEEEESSSSSBTTS CS
  Amino_oxidase  1 laGLaaArqLlsaGfdVtvlEardrvGGRi 30
                   l+GL+aA++   +G +V++l  ++ +GG  
     KKY15789.1 13 LSGLSAAHTVYLNGGSVLLLDKNNFFGGNS 42
                   79**************************75 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0045
                    THHHHHHHHHTTTTEEEETSEEEEEEEEETTC.EEEEET.TSTEEEESEEEE CS
  Amino_oxidase 209 lsqlpealaeelrgldirlntrVkeikregdg.vtvtle.dgevveaDaVvv 258
                    +++l e ++++  ++++   ++V ei++eg++  +v++e +gev+++D Vvv
     KKY15789.1 140 MQRLEELVESDPERVQVIKKAKVVEINKEGNTvTGVKYEyNGEVTSVDGVVV 191
                    5555555555889999999*********8887567777789********665 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.28
                    ECCCSTTTEEEEEEEEECHHHHHHHTTS-HHHHH CS
  Amino_oxidase 329 fpsrappgkglvllvyvggdaaneleslsdeelv 362
                    + +  p g + +l++++g da +e+e l d+e++
     KKY15789.1 580 WLDEHPGGPQ-ALFSHMGRDASEEFEMLHDDEVI 612
                    4444455555.59999999999999999999876 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   1.3e-05     0.017       3      34 ..       5      36 ..       4      50 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.3e-05
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                    V++VG+G++Gl++a+     G +v+l++k +
     KKY15789.1  5 RVIVVGGGLSGLSAAHTVYLNGGSVLLLDKNN 36
                   69***************************986 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.2    0.0048       6.1       1      18 [.       5      22 ..       5      45 .. 0.83
   2 ?    7.9   0.2    0.0034       4.4      46      79 ..     143     178 ..     132     185 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0048
                EEEEECSSHHHHHHHHHH CS
   Pyr_redox  1 kvvvvGgGyiglElAgal 18
                +v+vvGgG++gl +A + 
  KKY15789.1  5 RVIVVGGGLSGLSAAHTV 22
                79***********99875 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0034
                 HHHHHHHT..TEEEECSEEEEEEEEETTSEEEEEEE CS
   Pyr_redox  46 lqeklekn..gievllntkveeiegsedgvesvklk 79 
                 l+e +e     ++v+ ++kv+ei++++++v++vk +
  KKY15789.1 143 LEELVESDpeRVQVIKKAKVVEINKEGNTVTGVKYE 178
                 44444444668****************99****986 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3     9e-05      0.11      29      60 ..       4      35 ..       1      53 [. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9e-05
                 -EEEEESTSHHHHHHHHHHHHTT-EEEEEESS CS
  AlaDh_PNT_C 29 akvlviGgGvaGlqAiatakglgakVtvlDvr 60
                 ++v+v+GgG  Gl+A++t    g +V +lD++
   KKY15789.1  4 SRVIVVGGGLSGLSAAHTVYLNGGSVLLLDKN 35
                 79*******************9****999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 4166.44
//
Query:       KKY15790.1  [L=165]
Description: putative catabolic 3-dehydroquinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-57  192.2   0.0    3.3e-57  192.0   0.0    1.0  1  DHquinase_II  Dehydroquinase class II
  ------ inclusion threshold ------
       0.11   12.0   0.0       0.41   10.2   0.0    1.8  2  PrpR_N        Propionate catabolism activator


Domain annotation for each model (and alignments):
>> DHquinase_II  Dehydroquinase class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.0   0.0   3.7e-61   3.3e-57       1     136 [.       8     144 ..       8     146 .. 0.98

  Alignments for each domain:
  == domain 1  score: 192.0 bits;  conditional E-value: 3.7e-61
                   .EEEEE-TTGGGTTTSTCCCC-SS-HHHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHHCTT.T.TEEEEE-GGGGGT-HHHHHHHHTSSS-EEE CS
  DHquinase_II   1 kilvlnGpNlnllgkrepeiygsetledieeelkekaeelgvelevfqsnhEgelidriqeake.kvdgiviNpgaythtSvalrdalaaveipvvE 96 
                   +ilvl+GpNlnllg+rep iygs+tl +i+++l++   +++++l++fq+nhEg l+dri+ea++  vd+i+iNp+a+th+Svalrdal  v+ip+vE
    KKY15790.1   8 SILVLHGPNLNLLGTREPGIYGSATLPSITSQLDALGPKHNIRLQHFQTNHEGMLVDRIHEARTqGVDAIIINPAAFTHYSVALRDALLGVDIPFVE 104
                   59***********************************************************9986899***************************** PP

                   EESS-GGGS-GGGG--SSGGGSSEEEESSTTHHHHHHHHH CS
  DHquinase_II  97 vhlsnvhaReefrhksvlsdvakgviaGlglegYelalea 136
                   vh+snv++Re++r+ks+++d+a++viaGlg+ gY +ale+
    KKY15790.1 105 VHISNVYKREAWREKSFFKDKAEAVIAGLGVFGYVAALEF 144
                   **************************************97 PP

>> PrpR_N  Propionate catabolism activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   4.6e-05      0.41      78     124 ..      32      78 ..      19      87 .. 0.91
   2 ?   -1.0   0.0      0.12   1.1e+03      46      56 ..      98     108 ..      90     110 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 4.6e-05
      PrpR_N  78 gfeniikglktlselldldieiytinseeeaeaavkelkaegvevvv 124
                 + ++i+++l+ l    ++++++++ n+e  + + ++e++ +gv++++
  KKY15790.1  32 TLPSITSQLDALGPKHNIRLQHFQTNHEGMLVDRIHEARTQGVDAII 78 
                 668899999999999******************************98 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.12
      PrpR_N  46 vsvPVveikvs 56 
                 v++P ve+++s
  KKY15790.1  98 VDIPFVEVHIS 108
                 78999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1292.10
//
Query:       KKY15791.1  [L=197]
Description: putative quinate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-07   31.4   0.0    3.9e-07   30.2   0.0    1.6  1  Shikimate_dh_N  Shikimate dehydrogenase substrate binding dom
    3.3e-06   26.8   0.8    7.4e-06   25.6   0.8    1.7  1  SDH_C           Shikimate 5'-dehydrogenase C-terminal domain
  ------ inclusion threshold ------
       0.17   11.4   0.0       0.33   10.5   0.0    1.5  1  YoaP            YoaP-like


Domain annotation for each model (and alignments):
>> Shikimate_dh_N  Shikimate dehydrogenase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   6.5e-11   3.9e-07       1      53 [.      18      69 ..      18      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 6.5e-11
                    EEESS-TT-SHHHHHHHHHHHCTSSEEEEEEE-SCCTHHHHHHHHHH.TTESEE CS
  Shikimate_dh_N  1 viGnpikhSlSPaihnaafkalglngsyeafeveedelekaveelra.lglaGl 53
                    ++G+pi+hSlSP++hna++ +l  n+   + e++  +le a++ lr+ ++l Gl
      KKY15791.1 18 LVGHPIAHSLSPVLHNAFYTNLSRNWDLLLYETK--DLEGAMQYLRSePKLYGL 69
                    79********************************..99***9999997888886 PP

>> SDH_C  Shikimate 5'-dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.8   1.2e-09   7.4e-06       1      31 []     156     189 ..     156     189 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.2e-09
                 HHHHHHHHHHHHHHHHHS---...-HHHHHHHHH CS
       SDH_C   1 GLgMLveQgaeqFelWTGrep...PvevMreall 31 
                 G++ +v+Qg+eq +lWTG +    Pv   rea++
  KKY15791.1 156 GTEAMVWQGVEQARLWTGLPIseiPVRQAREAVQ 189
                 8999*****************9999999999985 PP

>> YoaP  YoaP-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   5.5e-05      0.33       4      20 ..      78      94 ..      76      96 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.5e-05
        YoaP  4 likletlEqAqnaPcpf 20
                + ++++ EqA+ +P+p+
  KKY15791.1 78 VYHVQSVEQAKGLPSPA 94
                68**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1304.61
//
Query:       KKY15792.1  [L=496]
Description: putative quinate permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.1e-118  395.1  21.9    1.5e-83  281.2  10.3    2.0  2  Sugar_tr  Sugar (and other) transporter
    4.7e-15   55.4  31.7    1.8e-13   50.2  24.2    3.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.1   4.4   6.2e-39   5.5e-35       7     146 ..       3     140 ..       1     142 [. 0.95
   2 !  281.2  10.3   1.7e-87   1.5e-83     163     452 .]     138     446 ..     134     446 .. 0.93

  Alignments for each domain:
  == domain 1  score: 121.1 bits;  conditional E-value: 6.2e-39
                 HHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGG CS
    Sugar_tr   7 lggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevl 105
                  + +++gYd+++ig++++l +f  +fgl+  +++k+  ++ls  ivs++++Ga++G++fa+++++++GRk +l i++++f++ga l+  a+g++ + ++
  KKY15792.1   3 SAAIMIGYDSAFIGTTIALDSFRDEFGLTDVSTEKK--NLLSANIVSCYQAGAFFGAFFAYPFSHFYGRKVGLQIFSTVFIVGAGLMCGANGDRGLGLI 99 
                 5679*****************999999998888776..6************************************************************ PP

                 GGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHH CS
    Sugar_tr 106 ivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqla 146
                 + gRvl+GigvG+as+l+P+y+sEi+p+++Rg+l +l++++
  KKY15792.1 100 YGGRVLAGIGVGGASNLSPIYVSEISPPAIRGRLYGLTETM 140
                 ***********************************999876 PP

  == domain 2  score: 281.2 bits;  conditional E-value: 1.7e-87
                 TSS-..TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH..........HTTH...HHHSH. CS
    Sugar_tr 163 ktsn..adgwrillglqlvpallllilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeee.....kaswkel...lssktv 251
                 +t +  +++w i++++ql+pa lll++ ++++ESPr+l+++ ++e+  + l +lr+ + +d ++ ee++s++a+ e +       +w+++   l+ k++
  KKY15792.1 138 ETMApsHKQWLIPFAVQLIPAGLLLFGSFLVRESPRWLFSRSNREQGLRNLCWLRQLDSQDIYMMEEVASIDAALEYQrstigLGFWQPFravLRDKKI 236
                 45555789******************************************************************998899999667766522277777* PP

                 ..HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HHHHHHHHHHHHHHHHHH.HHHHHHS-SHHHHHHHHHHHHHHHHHHH.....HHHHTT CS
    Sugar_tr 252 rqrlligvvlqifqqltGinaimyysptifenlglsks...llvtiivgvvnfvatfva.iflvdrfGRRtllllGaagmaicfvilg...ivalllva 343
                 ++r++ig +l ++q+ +Gina+ yysptif+++g++ +   ll+t+i+gv+++v+t+v+ +flvd++GRR+ll+ Ga+g++i+++++g   ++a+l+ +
  KKY15792.1 237 LYRFFIGGALFFWQNASGINAVNYYSPTIFKSIGVQGTntsLLTTGIFGVIKTVVTIVWlLFLVDKLGRRNLLFYGAVGGSIAMWYIGayiKIADLTHH 335
                 ************************************99999******************77***************************98555555555 PP

                 SS......CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS-- CS
    Sugar_tr 344 ks...kaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpe 439
                  s      +i a++f+++++++++++w+++pwv+ sE+f+qsvR++a+a+a+a nwl+nfl++ ++p++++++g ++v+++fa+l++l++ifv+f++pe
  KKY15792.1 336 PSdklGNGGISAMAFFYIWTIFYTPTWNGTPWVYNSEIFDQSVRTLAQAFAAANNWLWNFLVARFTPQMFSTMG-YGVYFFFASLMLLSTIFVYFCLPE 433
                 5597667788899*************************************************************.************************ PP

                 STT--CCCCGGGT CS
    Sugar_tr 440 tkgrtleeieelf 452
                 tkg++le +++lf
  KKY15792.1 434 TKGVPLESMDRLF 446
                 **********997 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2  24.2     2e-17   1.8e-13       2     347 ..       2     392 ..       1     398 [. 0.73
   2 !    2.7   2.4    0.0055        49     118     175 ..     378     434 ..     368     467 .. 0.61

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 2e-17
       MFS_1   2 llaaflsalarsilgpalpl.alaedlgispse...igl....lltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfa...sslwll 88 
                 + aa++++++++++g+++ l    +++g++  +    +l    ++++y +ga+++++++ ++s  +Gr+  + +++ ++ + ++l++  a    +l l+
  KKY15792.1   2 ASAAIMIGYDSAFIGTTIALdSFRDEFGLTDVStekKNLlsanIVSCYQAGAFFGAFFAYPFSHFYGRKVgLQIFSTVFIVGAGLMCG-AngdRGLGLI 99 
                 568999**********************4444434433366689**************************555555555555578888.445666889* PP

       MFS_1  89 lvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkee 187
                 + +rvl+G+g g++  ++ +++++++p+  rgr +gl  ++       +p    +l+       +f +  i + l+  lf+ +l +++++r+ +s   +
  KKY15792.1 100 YGGRVLAGIGVGGASNLSPIYVSEISPPAIRGRLYGLTETM-------APSHKQWLI-------PFAVQLIPAGLL--LFGSFL-VRESPRWLFSRSNR 181
                 ***********************************999994.......455555555.......999999999999..555555.66777777777777 PP

       MFS_1 188 e..................................kgtgpaplvpawkallkdpvlw.illialllfffgfsg....lltllplylqevlgls....gl 243
                 e                                  +  g   + p ++a+l+d+ ++  ++i+ +lff+ +++    + +++p++  +  g      + 
  KKY15792.1 182 EqglrnlcwlrqldsqdiymmeevasidaaleyqrSTIGLGFWQP-FRAVLRDKKILyRFFIGGALFFWQNASginaVNYYSPTI-FKSIGVQgtntS- 277
                 779**********************99998888866666666666.********99665555555553333334666*******7.899999966544. PP

       MFS_1 244 llaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt..............ssavllllvlvliGf.glgfvfpsllalasd 327
                 ll++++++++  v+ i+  ++ +l+d+lgr  r+ll+++++  + +++++ a +              +  + ++++++++++    + +++ +++ s+
  KKY15792.1 278 LLTTGIFGVIKTVVTIV--WLLFLVDKLGR--RNLLFYGAVGGSIAMWYIGAYIkiadlthhpsdklgNGGISAMAFFYIWTIfYTPTWNGTPWVYNSE 372
                 44444555555555444..777888**998..4444444444444444444444668899888777755555555577778884444448888888888 PP

       MFS_1 328 lappeeagtasglfntagsl 347
                  + ++ +  a++++   + l
  KKY15792.1 373 IFDQSVRTLAQAFAAANNWL 392
                 88877777777666655555 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.0055
       MFS_1 118 ergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpee 175
                  r++a ++++a + l   l + + + + s  g  +v++++a ++ll+ +++++ lpe+
  KKY15792.1 378 VRTLAQAFAAANNWLWNFLVARFTPQMFSTMG-YGVYFFFASLMLLSTIFVYFCLPET 434
                 55555555555555555555555555554444.4778888888888888655554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.56
# Mc/sec: 2667.86
//
Query:       KKY15793.1  [L=357]
Description: hypothetical protein UCRPC4_g06111 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.52
# Mc/sec: 2076.02
//
Query:       KKY15794.1  [L=505]
Description: putative cryptochrome dash [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-43  146.8   0.0    8.6e-43  146.2   0.0    1.2  1  FAD_binding_7  FAD binding domain of DNA photolyase


Domain annotation for each model (and alignments):
>> FAD_binding_7  FAD binding domain of DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.2   0.0   4.8e-47   8.6e-43       4     173 ..     151     329 ..     149     356 .. 0.83

  Alignments for each domain:
  == domain 1  score: 146.2 bits;  conditional E-value: 4.8e-47
                    HHHHHHHHHHHHHCS.TTTTTSSTTGCCTT-----....-HH......HHHHHHTT-SS-HHHHHHHHHHHHHS---HHHHHHHHHHHCTTT-B-H CS
  FAD_binding_7   4 eLlwrefyyallaae.pelaeralkekfdripwee....seee.....kleaWkeGrTGfPlvDAamrqLretGwmhnrlRmivasFltkdLlidW 89 
                    eLlwr++++ +  ++ p+l +    ++ +++pw++    +  +     +++++  GrTG+ l+DA   +L +tG+ +nr+R+ vasFl k+L idW
     KKY15794.1 151 ELLWRDYMRLCTRKFgPRLFHLGGFRNDSSYPWKSpltsR--DptlpnTITRFLLGRTGLGLIDASQLELLHTGYTSNRARQNVASFLAKHLGIDW 244
                    89**********9998888644444444558998855321..2334445*********************************************** PP

                    HHHHHHHHHH-TT--CCHHHHHHHHHCT-STTS-STT----CCCCHHHCSTT-HHHHHH-GGGTTS-HHH.HT-GGGSGCHHHHH CS
  FAD_binding_7  90 regeevFeellvDadlasnagnwqwlagtgadaapafrifnpvkqgkkfDpegeyirrwvpeLkklpaky.ihepwkapaeeqkk 173
                    r g+e++e llvD+d++sn+gnwq+++g+g d +   r fnpvkqg ++D++geyi+ w+ eL+ +++   i +p   + ee+k+
     KKY15794.1 245 RLGAEWYEYLLVDYDVSSNWGNWQYVSGVGNDPRGSDRKFNPVKQGIDYDSNGEYIKSWIKELRPINDVLkILQPGLLTTEEKKS 329
                    ****************************************************************998543377777666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.47
# Mc/sec: 3197.24
//
Query:       KKY15795.1  [L=571]
Description: putative glutamate decarboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-58  196.4   0.0    7.4e-58  196.0   0.0    1.1  1  Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved do
    3.7e-06   26.1   0.0      8e-06   25.0   0.0    1.5  1  Aminotran_5    Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.0   0.0   8.3e-62   7.4e-58      13     366 ..      86     416 ..      71     425 .. 0.88

  Alignments for each domain:
  == domain 1  score: 196.0 bits;  conditional E-value: 8.3e-62
                    HSSHH.HHHHHHHHHHCTGGGS--TTSTTBHCSSH....HHHHHHHHHHHHHT-BTSSTTTSHHHHHHHHHHHHHHHHHTT--GGGTCCT-EEEEE CS
  Pyridoxal_deC  13 pekaesleqilediekilapgvttwhspefhkllpagnslisllgdlLadainkngftweesPaltelevvvldwlaellglpeeflekegggvlq 108
                     +  +++ ++++  + +la++v t ++ e   l+               +   kn  + +e+Pa++++  +++  la+l+g+   ++ek + g+ +
     KKY15795.1  86 HQMLKDELDLDGRPNLNLASFVGTYMEREAERLMI--------------ENLSKNLSDADEYPAMMNMHARCISILAHLWGVQ--KGEK-AIGTAT 164
                    44445567777777777777777777777777777..............78899999*************************9..5665.99**** PP

                    SSHHHHHHHHHHHHHHHHHHHHHHHTTTS.HHHHHCCEEEEEETTS-HHHHHHHHHHT-EEEEE--BTTTBB-HHHHHHHHHHHHCTT.EEEEEEE CS
  Pyridoxal_deC 109 vgssestllallAartkvikemkekgkelkeaeildklvlytsdqahssvekaalvlgvklrvipldengklrgaalekaieedkekGlipffvva 204
                    +gsse++ l++lA++++++++ +++gk+      + ++++  +++a++++ek+a++++v+ r +p+ e+   r+     +++e++++  ++  + +
     KKY15795.1 165 TGSSEAIHLGGLAMKRHWQEKRRAAGKD------TLRPNIIMGANAQVALEKFARYFEVEARILPVSEKS--RFRLDPDLVKENIDE-NTI-GIFV 250
                    ***************************9......889******************************965..555555666666665.366.7888 PP

                    EBS-TTT-BB--HHHHHHHHHH......CT-EEEEE-TTGGGGGGSGGGGG......GGTTGGGESEEEEECCCCTS--SS-EEEEESSCCGCHHH CS
  Pyridoxal_deC 205 tlGttvlgaFddlkelgdicek......ydlwlHvDAAyaGsaficpeirh......llkgieradSitvnphKlllvlldcsalivkdkealqqa 288
                    +lG+t++g ++ ++e+ +i+++      +d+++HvD A++   +i+p+         +++++ r++Si++++hK++lv+++++++i++d++ l++ 
     KKY15795.1 251 ILGSTYTGHYEPVEEISKILDEyeartgIDIPIHVDGASGA--MIAPFTHAkaggpkWDFKLSRVKSINTSGHKFGLVYAGVGWIIWRDESYLPKD 344
                    9*************************************987..****98878999***************************************** PP

                    H-EEECCCT.TTTTTSEECCCGSSSSSG..HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTEEECSTTB CS
  Pyridoxal_deC 289 lqleaeYLehedsdvaadlgtkaiplsr..rvrilklwfvlralGveglqnqirksvelakyleklirkderfeivaeve 366
                    l++e +YL+          + +++++sr   + i++++ ++  lG +g++  ++ ++++a+ l k +++++ ++ v++ +
     KKY15795.1 345 LIFELHYLG-------GTEESYTLNFSRpgAQIIAQYFNLIH-LGFNGYRDIMEGCLHNARLLSKALEATGWYHCVSDIH 416
                    *********.......66689********8889999999999.***************************9999998765 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   8.9e-10     8e-06      67     215 ..     164     337 ..     135     354 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 8.9e-10
                  ESSHHHHHHHHHHHCCCC-TTTSEEEEET.......TSHGGGTHHHHHHHHHHTEEEEEEEBETTSC..BEGGGHHHH--TTEEEEEEESBETTTTEB CS
  Aminotran_5  67 tsGtteainlvalslarslkpgdeivvte.......aehhanlvpwqelakrtgakvkvipldeege..ldldelekllnektklvaithvsnvtGti 155
                  t G++eai l  l+++r++++++++  ++       ++ +a++ + ++ a+   ++ +++p+ e+ +  ld+d ++++++e+t  +++   s+ tG  
   KKY15795.1 164 TTGSSEAIHLGGLAMKRHWQEKRRAAGKDtlrpniiMGANAQV-ALEKFARYFEVEARILPVSEKSRfrLDPDLVKENIDENTIGIFVILGSTYTGHY 260
                  4566667777777777776666666544322223337888988.999999***********99987611568999*********************** PP

                  --HHHHHHHHHHTT-E......EEEE-TTTTTTS---HHHHT...ESE.......EEEETTT.TTSSTT-EEEEEEH CS
  Aminotran_5 156 qpveeigklakkkgal......vlvDaaqavghipidvkklg...vDf.......lafsghK.llgPtGiGvlyvrk 215
                  +pveei k++ +++a       ++vD+a++++ +p+  +k g    Df       +  sghK  l  +G+G ++ r+
   KKY15795.1 261 EPVEEISKILDEYEARtgidipIHVDGASGAMIAPFTHAKAGgpkWDFklsrvksINTSGHKfGLVYAGVGWIIWRD 337
                  ********998877652222237999999998888766665533334432322225567777556666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 3834.26
//
Query:       KKY15796.1  [L=477]
Description: putative 4-aminobutyrate transaminase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.6e-125  418.3   0.0   2.9e-125  418.1   0.0    1.0  1  Aminotran_3  Aminotransferase class-III


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.1   0.0  1.6e-129  2.9e-125       3     406 .]      47     475 ..      45     475 .. 0.97

  Alignments for each domain:
  == domain 1  score: 418.1 bits;  conditional E-value: 1.6e-129
                  -TTB--SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHH....HHHCT-..SEEEEESSH CS
  Aminotran_3   3 areednlllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekl....lklapkgldkvflansG 96 
                  + ++ n+++++tk+ G+y++d dg+ +lD++++ia++++G+++P++++++k+q++++s+++++al+n p+ ++ae+l    lk+apkgl++vf+a++G
   KKY15796.1  47 DTRSLNMIADYTKSYGNYIVDPDGNVLLDVYAQIASIPVGYNNPALLEVAKSQEMASSIINRPALGNFPSNDWAEILktgiLKVAPKGLNQVFTAMAG 144
                  66788999****************************************************************************************** PP

                  HHHHHHHHHHHHHHHHHTSHCTT-......................EEEEETTT---SSHHHHHHSS--TTTTTTCTTB...-TSEEEE-TTBGGGTB CS
  Aminotran_3  97 seAvetAlKlarkyarekkatekt......................kiiafkgafHGrtlgalsvtgskkkyktlfgpf...lpevvrlkypdeevlk 169
                  s+A+etA+K+a++++r++++                          +i++fk+afHGr++g+ls+t+sk+++k ++++f   + ++++lkyp+  ++ 
   KKY15796.1 145 SDANETAYKAAFMWKRQQERGGYDvefteedikssminqtpgspqlSIMSFKSAFHGRLFGSLSTTRSKPIHKLDIPAFdwpQGPFPHLKYPLDQFAA 242
                  ******************977777889999**************************************************9999************** PP

                  -HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGC..TS--SEEEE-.GGGG CS
  Aminotran_3 170 eneeeeaalleelealekkkkdevaAvivEpiqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAleha..gvspDlmtla.Kalt 264
                  en+ ee+++l+e+e+++k+ ++ vaAv++Epiq+egG+++asp+f+++lre++k+++vl+ivDEvqtG+G+TGk++A+eh+  + +pD++t++ Ka+t
   KKY15796.1 243 ENAAEEERCLKEAEKIIKEFHNPVAAVVIEPIQSEGGDNHASPAFFRGLREITKRNNVLFIVDEVQTGVGATGKFWAHEHWnlPSPPDMVTFSkKAQT 340
                  *********************************************************************************77789*******9**** PP

                  TT.SS-EEEEEEHHHHTTS-TTSB--TTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-.TTEEEEEEE..TTEEEEEEBCCCET CS
  Aminotran_3 265 gG.lplsavlataevmqalapgshgsTfgGnplacavalavleiieeekllenaqelgaalkegLeelqkky.evikevRgk..Glmiaielkeeaev 358
                  +G +  +  l+++++++++      +T++G+p ++++++ +++ ie+ +l+e+++ +g++l++gL +l+kk    i+++Rgk  G++ia++ + ++e 
   KKY15796.1 341 AGyYYGNPELRPNKPYRQF------NTWMGDPTRALLFRGIINEIERLNLVEHTATVGDYLYKGLDALSKKFpGEIENLRGKgqGTFIAFDSPRRDE- 431
                  **99***************......**********************************************989*******9778999998777766. PP

                  TCHHHHHHHHHCTEE-EEETTTEEEE---TT--HHHHHHHHHHHHHHH CS
  Aminotran_3 359 kekeilkkakekGvlilsaGdnvirllppliitdeeidelleilkkal 406
                      +lkkak  Gv+i+++G++++rl+p+li++++++d ll++++k+l
   KKY15796.1 432 ----FLKKAKGFGVNIGGSGERAVRLRPMLIFQQHHADILLDAIEKIL 475
                  ....*****************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3319.48
//
Query:       KKY15797.1  [L=479]
Description: putative serine threonine protein phosphatase ppt1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-32  110.5   0.9    6.1e-32  109.8   0.2    1.8  2  PPP5         PPP5 TPR repeat region
    8.6e-31  108.0   0.1    1.3e-30  107.4   0.1    1.3  1  Metallophos  Calcineurin-like phosphoesterase
      1e-09   37.8   2.5    0.00041   20.1   0.3    3.8  3  TPR_1        Tetratricopeptide repeat
    1.8e-07   30.7   1.2       0.13   12.4   0.2    3.5  3  TPR_2        Tetratricopeptide repeat
    1.2e-05   24.9   1.2       0.55   10.0   0.1    3.4  3  TPR_11       TPR repeat
     0.0039   17.7   0.0        1.6    9.3   0.0    2.6  2  TPR_19       Tetratricopeptide repeat
     0.0091   16.3   1.0          2    9.0   0.2    3.5  3  TPR_17       Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.014   16.1   0.0        4.2    8.1   0.0    2.4  2  TPR_16       Tetratricopeptide repeat
      0.014   16.0   0.1          5    8.0   0.0    2.8  2  TPR_6        Tetratricopeptide repeat
      0.091   12.9   0.0        5.9    7.1   0.0    2.2  2  TPR_9        Tetratricopeptide repeat
       0.18   12.1   1.8       0.54   10.6   0.3    2.6  3  TPR_8        Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PPP5  PPP5 TPR repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.7   6.1e+03      52      56 ..      73      77 ..      33     106 .. 0.55
   2 !  109.8   0.2   3.7e-35   6.1e-32       1      94 []     118     208 ..     118     208 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.7
        PPP5 52 itqeF 56
                i+ ++
  KKY15797.1 73 IDPSY 77
                33333 PP

  == domain 2  score: 109.8 bits;  conditional E-value: 3.7e-35
        PPP5   1 lkeceklirreaFekAIeveekesasetldlesieveksYdGprLeeeeekitqeFvkamierfkkgkklhkkyvyaillkvkellkkepslve 94 
                 l+ece+l++r++F kAIe ++++sa+e ld++si+ve sYdG++L    +++tqeF+++mierfk+gkk+h+kyv++i+ +vke++ +ep++ve
  KKY15797.1 118 LSECERLVKRINFYKAIEIGDEPSAFEGLDIDSIAVEPSYDGVKL---GKEMTQEFIDDMIERFKNGKKIHRKYVFQIIKAVKEIVYDEPAMVE 208
                 689******************************************...778*****************************************97 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.4   0.1     8e-34   1.3e-30       2     202 ..     216     411 ..     215     413 .. 0.88

  Alignments for each domain:
  == domain 1  score: 107.4 bits;  conditional E-value: 8e-34
                  EEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrgdlekellel.laalvkypipvylllGNHe........gfeeellnkygylgi 90 
                  +++v+gD+H     gq+ dll++++    + +  ++l++GD+vdrg++++e++ l +++++ +p+ ++l +GNHe        gfe e++ ky+    
   KKY15797.1 216 TLTVCGDTH-----GQYFDLLEIFRLNGFPTDKHAYLFNGDFVDRGSWSTEIALLlYSYKWLRPNMFFLNRGNHEtddmnrvyGFEGECKAKYT---- 304
                  578******.....**********777666677777777****************99*****9********************9999*****99.... PP

                  HHHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEE.THHHHHHHHHHHSCHHHHCC.....HHHHHHHHHHTTCSEEEEEESSESS......CSS CS
  Metallophos  91 fsepwrsdaevfnnlplaslgsgslkvlllhGg.spel.lvsldklgslnleleapepg.....dewlkdlekrekadwvivlgHsply......rgs 175
                    ++++ ++e f++lpla l+++  k+l+lhGg +  + + +ld++++l+++   + ++     + ++ d        +         +      rg 
   KKY15797.1 305 -DRVFKVFSESFSALPLATLIGK--KYLTLHGGlF-SDdNITLDDIRKLDRHNQRQPGQsglmmEMLWTD--------PQPQ------NgrgpskRGV 384
                  .68899*****************..********43.3358899999999999998888888999888998........3333......2555557*** PP

                  SCSCCHHHHHHHHHHTTESEEEEESSS CS
  Metallophos 176 gylfgdealedllkkygvdlvisGHtH 202
                  g +fg+++++++++++g+ +vi++H+ 
   KKY15797.1 385 GLQFGPDVTKRFCENNGLEAVIRSHEV 411
                  *************************85 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0006      0.98       7      30 ..      16      39 ..      10      43 .. 0.86
   2 !   20.1   0.3   2.5e-07   0.00041       3      34 .]      46      77 ..      44      77 .. 0.94
   3 !    6.1   0.0    0.0062        10      16      34 .]      93     111 ..      83     111 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0006
                HHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1  7 lGnayfklgkydeAleyyekALel 30
                 Gn  f   ++  A+++y kA+e 
  KKY15797.1 16 QGNKAFAAHDWPTAIDFYTKAIEK 39
                588889999*************95 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 2.5e-07
                HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  3 alynlGnayfklgkydeAleyyekALelnPnn 34
                 ++n+++a  kl+ y  A+++  kA+e++P++
  KKY15797.1 46 FFCNRAQANIKLEAYGYAIADATKAIEIDPSY 77
                68****************************97 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0062
                 -HHHHHHHHHHHHHHSTTH CS
       TPR_1  16 kydeAleyyekALelnPnn 34 
                 +  eAl++++ +++ +Pnn
  KKY15797.1  93 NSREALKDFKTVVKKEPNN 111
                 5679*************98 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0014       2.3       7      33 ..      16      42 ..      13      43 .. 0.89
   2 !   12.4   0.2   8.1e-05      0.13       3      33 ..      46      76 ..      44      77 .. 0.92
   3 !    6.8   0.0    0.0051       8.4       4      34 .]      81     111 ..      78     111 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0014
       TPR_2  7 lGlayyklgdyeeAleafekAleldPn 33
                +G+ ++++ d+  A++++ kA+e + +
  KKY15797.1 16 QGNKAFAAHDWPTAIDFYTKAIEKYDQ 42
                5888999****************9865 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 8.1e-05
       TPR_2  3 alynlGlayyklgdyeeAleafekAleldPn 33
                  +n+++a +kl  y  A+++  kA+e+dP 
  KKY15797.1 46 FFCNRAQANIKLEAYGYAIADATKAIEIDPS 76
                5789**************************7 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0051
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPnn 34 
                  ++++ a  +  +  eAl++f+ +++ +Pnn
  KKY15797.1  81 FWRRAIANTAILNSREALKDFKTVVKKEPNN 111
                 566666666667788**************98 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00048      0.78       3      40 ..      19      56 ..      17      58 .. 0.86
   2 !   10.0   0.1   0.00034      0.55      18      37 ..      68      87 ..      55      90 .. 0.83
   3 ?    2.7   0.0     0.062     1e+02      12      30 ..      96     114 ..      95     118 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00048
      TPR_11  3 ayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayyk 40
                  ++  +++ Ai  Y kA++   ++a++++n+++a  k
  KKY15797.1 19 KAFAAHDWPTAIDFYTKAIEKYDQDASFFCNRAQANIK 56
                5566668999************************9765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00034
      TPR_11 18 kkAlkldPdnaeayynLGla 37
                 kA+++dP++  a++ ++ a
  KKY15797.1 68 TKAIEIDPSYIKAFWRRAIA 87
                69*************99977 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.062
      TPR_11  12 eAieaYkkAlkldPdnaea 30 
                 eA++++k+ +k  P+n +a
  KKY15797.1  96 EALKDFKTVVKKEPNNKDA 114
                 8***************887 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.015        24       2      39 ..      21      58 ..      20      65 .. 0.88
   2 !    9.3   0.0   0.00099       1.6       8      34 ..      95     121 ..      93     129 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.015
      TPR_19  2 laegdyaeAlalleqalqedpknaearllLAeallalg 39
                +a+ d   A++++++a++++ ++a    + A+a ++l 
  KKY15797.1 21 FAAHDWPTAIDFYTKAIEKYDQDASFFCNRAQANIKLE 58
                7899999*****************99999999988875 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00099
      TPR_19   8 aeAlalleqalqedpknaearllLAea 34 
                  eAl+ ++ + +++p+n +a+l L e+
  KKY15797.1  95 REALKDFKTVVKKEPNNKDAKLKLSEC 121
                 69**********************999 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.2    0.0012         2       1      22 [.      32      53 ..      32      64 .. 0.91
   2 ?    2.9   0.0      0.11   1.8e+02       3      15 ..      68      80 ..      66      88 .. 0.85
   3 ?    0.3   0.0      0.73   1.2e+03       2      21 ..     101     120 ..     100     135 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0012
      TPR_17  1 lylkaleldPnnadaynnLAel 22
                +y+ka+e++  +a +++n+A++
  KKY15797.1 32 FYTKAIEKYDQDASFFCNRAQA 53
                69******************97 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.11
      TPR_17  3 lkaleldPnnada 15
                +ka+e+dP++ +a
  KKY15797.1 68 TKAIEIDPSYIKA 80
                79******98665 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.73
      TPR_17   2 ylkaleldPnnadaynnLAe 21 
                 ++ +++++Pnn da   L e
  KKY15797.1 101 FKTVVKKEPNNKDAKLKLSE 120
                 6788999****988666655 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.017        27       3      66 ..      16      76 ..      15      78 .. 0.88
   2 ?    8.1   0.0    0.0026       4.2      12      48 ..      93     126 ..      92     128 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.017
      TPR_16  3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66
                +++ a++a d++ A+  ++ a++++    ++a +  ++++a  ++  +  A+a   +a++ +p+
  KKY15797.1 16 QGNKAFAAHDWPTAIDFYTKAIEKY---DQDASFFCNRAQANIKLEAYGYAIADATKAIEIDPS 76
                6778999999999**999*******...999999999999999999999999888888898886 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0026
      TPR_16  12 dyddAaaaleaalkrdpssPdaaeAllllgdaalrqg 48 
                 + ++A++ +++++k+    P + +A l l ++    +
  KKY15797.1  93 NSREALKDFKTVVKKE---PNNKDAKLKLSECERLVK 126
                 679*************...**********99987655 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.026        43      11      31 ..      22      41 ..      18      43 .. 0.84
   2 ?    8.0   0.0    0.0031         5       2      33 .]      80     111 ..      79     111 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.026
                HHHHHHHHHHHHHHHHHHH-T CS
       TPR_6 11 rklgdtdkAlealerlikeYP 31
                 +  d+ +A++ + + i++Y 
  KKY15797.1 22 AAH-DWPTAIDFYTKAIEKYD 41
                456.999*************6 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0031
                 HHHHHHHHHHH.HHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   2 Alyklalsyrk.lgdtdkAlealerlikeYPdS 33 
                 A++++a +  + l ++++Al+ ++ ++k+ P++
  KKY15797.1  80 AFWRRAIANTAiL-NSREALKDFKTVVKKEPNN 111
                 8999*******99.*****************95 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0036       5.9       7      61 ..      22      76 ..      18      80 .. 0.86
   2 ?    4.8   0.0     0.019        31      24      66 ..      73     115 ..      71     117 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0036
       TPR_9  7 reedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapd 61
                 ++dw+ a+  +   +    +d++    R++++ +l+++  A+ad   +++++p+
  KKY15797.1 22 AAHDWPTAIDFYTKAIEKYDQDASFFCNRAQANIKLEAYGYAIADATKAIEIDPS 76
                567888888888888888888999999********************99999995 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.019
       TPR_9  24 laPddpeerrdRGlllaqlGclsaAladLeaylalapdapdae 66 
                 ++P  +   + R++++    + ++Al+d+ + + ++p++ da 
  KKY15797.1  73 IDPSYIKAFWRRAIANTAILNSREALKDFKTVVKKEPNNKDAK 115
                 67777788889999999********************999986 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.5   2.4e+03      20      29 ..      29      38 ..      28      38 .. 0.91
   2 ?   10.6   0.3   0.00033      0.54       2      33 ..      45      76 ..      44      77 .. 0.92
   3 ?   -3.1   0.0         8   1.3e+04      18      33 ..      95     110 ..      93     111 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.5
                HHHHHHHHHH CS
       TPR_8 20 Akeyyekale 29
                A+ +y ka+e
  KKY15797.1 29 AIDFYTKAIE 38
                999*****97 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00033
                CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  2 eayynlgsiylklgdyeeAkeyyekaleldpd 33
                +  +n +++ +kl+ y  A++   ka+e+dp+
  KKY15797.1 45 SFFCNRAQANIKLEAYGYAIADATKAIEIDPS 76
                5689***************************7 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 8
                 HHHHHHHHHHHHHHHH CS
       TPR_8  18 eeAkeyyekaleldpd 33 
                  eA + ++ +++ +p+
  KKY15797.1  95 REALKDFKTVVKKEPN 110
                 6899999998886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3234.94
//
Query:       KKY15798.1  [L=147]
Description: hypothetical protein UCRPC4_g06116 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-29  100.6   0.0    1.2e-28  100.2   0.0    1.2  1  DUF1687   Protein of unknown function (DUF1687)
  ------ inclusion threshold ------
      0.087   12.5   0.1       0.15   11.8   0.0    1.5  1  HupH_C    HupH hydrogenase expression protein, C-terminal con


Domain annotation for each model (and alignments):
>> DUF1687  Protein of unknown function (DUF1687)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.2   0.0   1.3e-32   1.2e-28       4     126 ..      12     130 ..       9     133 .. 0.95

  Alignments for each domain:
  == domain 1  score: 100.2 bits;  conditional E-value: 1.3e-32
     DUF1687   4 lqkspdvitlFhnakspaSnkllklLkkasakasekakedq..........ereefelevtekfPTlDQlktilsyvgkskaksvlksafpelseilkk 92 
                   k+ dvit+Fh++ +paS+++l++Lk+asa+ase+a+edq          +r+efelevte++PT DQl++il+y+g   + +v+k+a+   ++++ k
  KKY15798.1  12 G-KTADVITIFHSPAVPASVHALTILKQASAHASETATEDQasdhshqnqtQRSEFELEVTEEPPTEDQLRSILEYLGGGGVGAVIKGAT-GITDAVTK 108
                 4.889***************************************************************************99********.99999999 PP

     DUF1687  93 fkkdeeskkklkelvkedlFkrplvVDWdngkia 126
                  k++            ++ F+rp++VDW++gk++
  KKY15798.1 109 LKNS------------SGAFQRPVTVDWNSGKAV 130
                 9999............9**************965 PP

>> HupH_C  HupH hydrogenase expression protein, C-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.7e-05      0.15      13      68 ..      54     109 ..      30     112 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHH---EEEEGGGS---HHHHHHHHHHH---SEEEEEE---EEEEEE-SS CS
      HupH_C  13 ealkalrpgeeahvinLtllPlseeDlelLdevLGegevtilsrgygncritetav 68 
                 ++ ++ + + +++ +++t+ P +e  l+ + e LG g v  +++g + ++   t++
  KKY15798.1  54 DHSHQNQTQRSEFELEVTEEPPTEDQLRSILEYLGGGGVGAVIKGATGITDAVTKL 109
                 455555677888999******************************98776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1065  (0.059401); expected 358.6 (0.02)
Passed bias filter:                      622  (0.0346924); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1061.86
//
Query:       KKY15799.1  [L=185]
Description: hypothetical protein UCRPC4_g06117 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1329.03
//
Query:       KKY15800.1  [L=425]
Description: putative fumarate hydratase class ii [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.2e-104  348.7   0.0   4.4e-104  348.2   0.0    1.2  1  Lyase_1      Lyase
    1.3e-21   76.7   0.0    2.9e-21   75.6   0.0    1.6  1  FumaraseC_C  Fumarase C C-terminus
  ------ inclusion threshold ------
       0.13   12.1   0.0        0.3   11.0   0.0    1.5  1  ADH_N        Alcohol dehydrogenase GroES-like domain


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  348.2   0.0  7.4e-108  4.4e-104      30     312 .]       7     302 ..       3     302 .. 0.98

  Alignments for each domain:
  == domain 1  score: 348.2 bits;  conditional E-value: 7.4e-108
                 CHHHHHHHHHHHTTSST...HHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHHHH....HHTT......HSSGIIIIITTT--HHHHH CS
     Lyase_1  30 kalaalkkaaakanvdl...keeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnevig....ellg......ekvepndkvhtgqSsnDqv 115
                 ka++++k aaa +nv+     ++ +ai++a+ ev++ +kl d+f+l+v+q+gsgt++nmn+nevi+    e+lg      ++v+pnd+v++++SsnD++
  KKY15800.1   7 KAFGIVKGAAARVNVKFgldPKVGEAIQQAAAEVAD-LKLIDHFPLVVWQTGSGTQSNMNANEVISnraiEILGgkmgskKPVHPNDHVNMSASSNDTF 104
                 6899********************************.*******************************9988889999*99****************** PP

                 HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTCEETTTTTTTSSTTTSCCTH CS
     Lyase_1 116 pTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllvellgggtavgtglnadpef 214
                 pT +++a++ ++++ Llpale L+da++ k ++f++++kiGrThlqdAtP+tlgqe+s+y+++l+r++er++ +l  +l  l++ggtavgtg+n+ + f
  KKY15800.1 105 PTVMHVAAVLEIENTLLPALESLRDAIQTKKEAFDSIIKIGRTHLQDATPLTLGQEFSGYVAQLDRSIERVQGSL-PHLRMLAQGGTAVGTGINTFKGF 202
                 ***************************************************************************.999999***************** PP

                 HHHHHHHHHHHHCST.EESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT.TSSEEEEGCCTSSC-TTSTTTEBTHHHHHHHHHHHHHH CS
     Lyase_1 215 aelvakelakvtglp.vkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssge.aglvelslaesepGSSiMPgKvNPvqlElltgvagrvv 311
                 ae +a+e+++++g    +apn+fe ++++Da+ve++g +++la+ L+k+a+D+r+l sg+ +gl+el l+e+epGSSiMPgKvNP+q+E+lt+v+++v+
  KKY15800.1 203 AEGIAEEISNLAGTRfITAPNKFEVLAAHDAIVEASGQMNTLACALFKIAQDIRYLGSGPrCGLGELVLPENEPGSSIMPGKVNPTQCEALTMVCAQVM 301
                 **************9************************************************************************************ PP

                 H CS
     Lyase_1 312 G 312
                 G
  KKY15800.1 302 G 302
                 9 PP

>> FumaraseC_C  Fumarase C C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.0   4.9e-25   2.9e-21       1      53 [.     368     420 ..     368     421 .. 0.98

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 4.9e-25
                  GGGGGHHHHHHHHHHHHHHHHHHHT--HHHHHHHTT-.-HHHHHHHT-HHHHH CS
  FumaraseC_C   1 LVTaLnphIGYekAakIAkeAlkegktlreavlelgllteeeldelldpekMt 53 
                  LVT+Lnp+IGY+ A+k+Ak A+k+g tl+e +lel+ l+ee++d+ ++pe M+
   KKY15800.1 368 LVTCLNPVIGYDMASKVAKNAHKKGLTLKESALELKALSEEDFDKYVRPELMI 420
                  8***************************************************8 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     5e-05       0.3      21      54 ..     143     176 ..     136     194 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5e-05
                 HTTSTTTTSSSSEE---EEEEEEEEESTT-CS-- CS
       ADH_N  21 lkggkelevklplilGHEivGeveevgpevkklk 54 
                   g+++l+ ++pl+lG E++G v+++++++++++
  KKY15800.1 143 KIGRTHLQDATPLTLGQEFSGYVAQLDRSIERVQ 176
                 5566889999****************99998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 2766.94
//
Query:       KKY15801.1  [L=412]
Description: hypothetical protein UCRPC4_g06119 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 2512.04
//
Query:       KKY15802.1  [L=229]
Description: putative atp synthase subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-63  212.5   9.9    4.5e-63  212.3   9.9    1.0  1  vATP-synt_E      ATP synthase (E/31 kDa) subunit
  ------ inclusion threshold ------
       0.82    9.6   0.1       0.82    9.6   0.1    2.6  3  HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2


Domain annotation for each model (and alignments):
>> vATP-synt_E  ATP synthase (E/31 kDa) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.3   9.9     5e-67   4.5e-63       1     199 []      21     219 ..      21     219 .. 0.99

  Alignments for each domain:
  == domain 1  score: 212.3 bits;  conditional E-value: 5e-67
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHCCCCH CS
  vATP-synt_E   1 fIrqeAeekAeeIkakaeeefeiekaklveeeeekieeayekkeKqaelqkkiaiSnalnkarlkvLkareevleevfeeaekkLaeveedkdeYkel 98 
                  fI+qeA ekA+eI+ ka+eef+iek+klv+ e+++i++ yekk Kqa l+++i+ S+a nk+rlkvL+ar+ +l+++fe+ ++k+++v++dk++Y+ +
   KKY15802.1  21 FIKQEALEKAREIQLKADEEFAIEKSKLVRSETQAIDNSYEKKFKQAALSQQITRSTASNKTRLKVLSARQALLDDLFEKSREKVKTVTKDKSKYEGI 118
                  8************************************************************************************************* PP

                  HHHHHCCCCCCC-SSCEEEEECCCCHHCCCCTHCCCCCCHHCCSSSS--SEEEEESSEBTTSSSEEEECCSSSCEEECCCHHHCHHHHHHHHHHCCCC CS
  vATP-synt_E  99 lkkLivqalvkleepevivrarkeDaelveealdkaaeeykaktkkktvevagdeedfledvlGGvvleaadgkikvnnTlearLelvleqllpeirk 196
                  lk+Li +++++l+e ++ +rark+D++ v++a+d+aa+eyk++ + +++ + +++e ++ed +GGv + +  gki++nnT+e+rL ++ +++lp++r 
   KKY15802.1 119 LKGLILEGAYALNEKKIGLRARKADYPSVKKAIDAAAKEYKKQLNTDVTIELDESEPLPEDSAGGVAIIGGGGKIEINNTFEERLAMLENDALPAVRS 216
                  ***********************************************999999999****************************************** PP

                  CHC CS
  vATP-synt_E 197 aLF 199
                   LF
   KKY15802.1 217 TLF 219
                  **9 PP

>> HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.3     0.092   8.3e+02       9      42 ..       2      36 ..       1      37 [. 0.78
   2 ?   -2.2   0.0      0.44   3.9e+03      10      33 ..      70      93 ..      66      96 .. 0.75
   3 ?    9.6   0.1   9.1e-05      0.82      10      42 ..     139     171 ..     137     172 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.092
  HU-CCDC81_bac_2  9 eaegisyeeAlqkiekeveelkqe.Leeegrvele 42
                     +++ +s +++ ++++k ++ +kqe Le+  +++l+
       KKY15802.1  2 SQHALSDDQVASELKKMTAFIKQEaLEKAREIQLK 36
                     67778999999999999999998548887777775 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.44
  HU-CCDC81_bac_2 10 aegisyeeAlqkiekeveelkqeL 33
                      ++i+  +A++k +  v + +q+L
       KKY15802.1 70 SQQITRSTASNKTRLKVLSARQAL 93
                     567888888888888888877777 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 9.1e-05
  HU-CCDC81_bac_2  10 aegisyeeAlqkiekeveelkqeLeeegrvele 42 
                      a + +y+++ ++i+ + +e k++L+++ ++el+
       KKY15802.1 139 ARKADYPSVKKAIDAAAKEYKKQLNTDVTIELD 171
                      67899*************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1438  (0.0802053); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1460.66
//
Query:       KKY15803.1  [L=306]
Description: putative cell cycle checkpoint protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-64  218.1   0.0    1.5e-64  217.9   0.0    1.0  1  Hus1      Hus1-like protein


Domain annotation for each model (and alignments):
>> Hus1  Hus1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.9   0.0   8.4e-69   1.5e-64      72     290 ..       1     303 [.       1     305 [. 0.96

  Alignments for each domain:
  == domain 1  score: 217.9 bits;  conditional E-value: 8.4e-69
        Hus1  72 eInlevdlaaLlraLksaeaaksvqlrLtkkgrvplLaleisglss..................................................... 117
                 +Inlev++ aL+raLksa +a+s+qlrLtkkg+vp+L+l+i  +                                                       
  KKY15803.1   1 MINLEVPIGALHRALKSAVGATSAQLRLTKKGDVPMLSLTIVDNVFmgmgmgsldttattnsttrprtaghddefgdfdfdtddlddfpatsgpsnaaa 99 
                 59***************************************999989**************************************************** PP

        Hus1 118 ...reretvvthdiPvkvlseseveelkePelrdpdvsilLPdllqLkklvdkfkkl.............ssdlltlsankdGeLklvvetdlvrvssk 200
                    reretv+t+diPvkvls ++ve+++eP++r+pd++i+LP+l+qLk ++++f++l             s+++ltlsa+++G L+l+++t ++++ss+
  KKY15803.1 100 gppRERETVITQDIPVKVLSLAAVEGIHEPRCREPDIHIMLPSLMQLKPISERFTRLaltstkstsstttSNPRLTLSATMHGTLRLSLTTPSLSISSS 198
                 *************************************************************************************************** PP

        Hus1 201 wskLenpeldasq.......leqlesereaeeeeedaedeaeeakvrvdlkklarvlsvgelkpkkvvacivhetalvlyvlldd............ee 280
                 w +L np ld+sq       ++ ++s+ +++ +e+d   +  +a+v+vd+k++ rvlsvg+l   +v+ac++++ta+v+yv+ldd             e
  KKY15803.1 199 WISLTNPDLDPSQlengsqsIRDHPSTIMKTYPESD---PRAWANVTVDAKDWGRVLSVGRLG-GRVIACLIDGTAVVMYVYLDDeedgeagtgggsGE 293
                 ***************998887788888887777777...************************.*********************88888888888878 PP

        Hus1 281 dvvltyyipa 290
                   +ltyyi++
  KKY15803.1 294 GGTLTYYISG 303
                 8888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.51
# Mc/sec: 1821.01
//
Query:       KKY15804.1  [L=334]
Description: putative 3-oxo-5-alpha-steroid 4-dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-53  179.3   2.3    1.5e-52  178.5   2.3    1.3  1  DUF1295          Protein of unknown function (DUF1295)
    1.8e-05   24.8   0.8    1.8e-05   24.8   0.8    2.6  4  Steroid_dh       3-oxo-5-alpha-steroid 4-dehydrogenase
     0.0017   18.7   0.0     0.0017   18.7   0.0    2.1  3  ICMT             Isoprenylcysteine carboxyl methyltransferase
  ------ inclusion threshold ------
      0.056   14.0   0.1       0.11   13.0   0.1    1.5  1  Peptidase_M15_4  D-alanyl-D-alanine carboxypeptidase
      0.062   13.7   0.1      0.062   13.7   0.1    2.5  3  PEMT             Phospholipid methyltransferase


Domain annotation for each model (and alignments):
>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.5   2.3   4.1e-56   1.5e-52       1     231 [.      26     268 ..      26     271 .. 0.88

  Alignments for each domain:
  == domain 1  score: 178.5 bits;  conditional E-value: 4.1e-56
     DUF1295   1 lflislltkssslvDvlwgvlfvilavltlllseaaklrrllvllLvvlWglRLalhllrrtlkkgeDkryeelrkelgktiallsllvvfvlQavlly 99 
                 +f i+ + k ++l+D+++g++fv+l+++tl++s +++ r++l  l+ +lWg+RL+ +ll r+lk+g D r+++ r+++        +l ++v+Q+ +++
  KKY15804.1  26 FFSIAFTFKFDKLTDFAGGTNFVVLSIVTLAFSGHHTARQILSSLFIILWGARLSGFLLFRILKTGSDSRFDDKRDKF------FPFLGFWVFQMFWVW 118
                 689999**********************************************************************88......36999********** PP

     DUF1295 100 lvalpvllaaaskeeq....al.kaldviglalwlvgivlealaDqQlsafkkdpa.nkgkvldsGLwrysRHPNYfgealiWwglflialea...... 186
                 +v+lpv++ +++k +q    +  +a d++g+++w +g+ +e  +D Q+ +f+++ +  k  v+++GL+++sRHPNYfge+l+ +g+f  a+        
  KKY15804.1 119 TVSLPVTILNSPKVQQysqhSYgTASDIVGMIMWAIGFFMESWSDVQKYRFRSQHSdDKSAVCNVGLFSWSRHPNYFGEILLQFGIFTSAIAPsaygyi 217
                 ***********999988876444789*************************9876516777**************************888754334444 PP

     DUF1295 187 .....leglealaiagpllltlllvfvsgipllEkkalkkykdk.eeyreY 231
                      ++ +++++i+gp +lt ll+fvsg  l E+   kk++++ + + eY
  KKY15804.1 218 psgtgAYAAQYASIIGPTFLTTLLMFVSGLTLQERPGAKKRYESgQGWLEY 268
                 44444567899***********************98777765431555555 PP

>> Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       1.1   3.9e+03     119     119 ..      31      31 ..       9      66 .. 0.53
   2 ?   -0.7   0.1      0.34   1.2e+03      17      58 ..      79     121 ..      63     137 .. 0.63
   3 !   24.8   0.8     5e-09   1.8e-05      30      96 ..     133     200 ..     109     218 .. 0.74
   4 ?   -2.0   0.0      0.88   3.2e+03      29      55 ..     225     249 ..     213     268 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.1
  Steroid_dh 119 n 119
                 +
  KKY15804.1  31 F 31 
                 1 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.34
  Steroid_dh  17 lnGllqarylsyyqpy.aedylkkdrlllgivlfvlgmlinik 58 
                 l+G+l +r l+   +   +d   k+  +lg+++f +  ++++ 
  KKY15804.1  79 LSGFLLFRILKTGSDSrFDDKRDKFFPFLGFWVFQMFWVWTVS 121
                 5777777777777665444544545556666666555555554 PP

  == domain 3  score: 24.8 bits;  conditional E-value: 5e-09
  Steroid_dh  30 qpy.aedylkkdrlllgivlfvlgmliniksdiiLrelr.kegetkykiprgglFelvsapnyfgEile 96 
                 q+y +++y +  + ++g++++++g++++  sd +  + r ++ + k  ++  glF +   pnyfgEil 
  KKY15804.1 133 QQYsQHSYGT-ASDIVGMIMWAIGFFMESWSDVQKYRFRsQHSDDKSAVCNVGLFSWSRHPNYFGEILL 200
                 3342344444.77899****************9888777256778999******************974 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 0.88
  Steroid_dh  29 yqpyaedylkkdrlllgivlfvlgmli 55 
                  ++ + +++   ++l+ +++fv g++ 
  KKY15804.1 225 AAQ-YASIIG-PTFLTTLLMFVSGLTL 249
                 333.334444.6788888888888765 PP

>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2         4   1.4e+04      53      62 ..      16      25 ..       8      32 .. 0.44
   2 ?   -3.1   0.1         3   1.1e+04      52      71 ..      47      64 ..      45      81 .. 0.50
   3 !   18.7   0.0   4.8e-07    0.0017      31      58 ..     176     203 ..     148     215 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4
        ICMT 53 vilelatllL 62
                +++ +a +l+
  KKY15804.1 16 FLMTVAYQLI 25
                2233333333 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3
        ICMT 52 fvilelatllLlcnakltal 71
                fv+l+++tl+   +   ta 
  KKY15804.1 47 FVVLSIVTLAFSGHH--TAR 64
                455666665555554..433 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 4.8e-07
        ICMT  31 pdhklvksglykylrHPnYllfvilela 58 
                 ++  + + gl+++ rHPnY++ ++l+ +
  KKY15804.1 176 DKSAVCNVGLFSWSRHPNYFGEILLQFG 203
                 34456678*************9887654 PP

>> Peptidase_M15_4  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1     3e-05      0.11       7      27 ..     135     159 ..     130     191 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3e-05
  Peptidase_M15_4   7 lSnHsyGlAiDinplvnpyw......k 27 
                       S+HsyG+A Di  ++  +w      +
       KKY15804.1 135 YSQHSYGTASDIVGMI--MWaigffmE 159
                      7***********9774..554444443 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.4       3.3   1.2e+04      78      88 ..      14      24 ..       9      33 .. 0.48
   2 ?   13.7   0.1   1.7e-05     0.062       4      67 ..     146     205 ..     144     217 .. 0.80
   3 ?   -0.0   0.0      0.32   1.1e+03      46     103 ..     203     260 ..     197     262 .. 0.62

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.3
        PEMT 78 lallvllvyli 88
                +++l++++y++
  KKY15804.1 14 ITFLMTVAYQL 24
                33333333332 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.7e-05
        PEMT   4 ilGlllialglllvlssiealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstlgflGla 67 
                 i+G+++ a+g+++  +s  +  +f         ++++++ + G+++++++P y+g +l  +G+ 
  KKY15804.1 146 IVGMIMWAIGFFMESWSDVQKYRFRSQHS----DDKSAVCNVGLFSWSRHPNYFGEILLQFGIF 205
                 56888888888887777666555555544....45789********************999975 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.32
        PEMT  46 GiYrylnnPeyvgstlgflGlaLi.tgsaag.lllallvllvylialkfvEephlakiYg 103
                 Gi+     P   g + +  G++ + + s+ g ++l++l+++v  + l+  E+p  +k+Y+
  KKY15804.1 203 GIFTSAIAPSAYGYIPSGTGAYAAqYASIIGpTFLTTLLMFVSGLTLQ--ERPGAKKRYE 260
                 556666666666666555555444266666666666666666666666..9998888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.51
# Mc/sec: 1972.44
//
Query:       KKY15805.1  [L=721]
Description: putative repressor protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-28  101.0   0.0    1.9e-28  100.3   0.0    1.2  1  DHquinase_I     Type I 3-dehydroquinase
    2.1e-18   66.3   0.2    5.6e-18   65.0   0.2    1.8  1  Shikimate_dh_N  Shikimate dehydrogenase substrate binding dom
    2.4e-08   33.6   0.0    4.7e-08   32.7   0.0    1.5  1  SDH_C           Shikimate 5'-dehydrogenase C-terminal domain
    1.6e-07   31.5   0.0    5.3e-07   29.8   0.0    1.8  2  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
    0.00057   20.0   0.0     0.0014   18.8   0.0    1.6  1  SKI             Shikimate kinase
      0.008   16.7   0.0      0.021   15.4   0.0    1.7  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
       0.05   12.4   0.0       0.08   11.7   0.0    1.3  1  ThiC_Rad_SAM    Radical SAM ThiC family


Domain annotation for each model (and alignments):
>> DHquinase_I  Type I 3-dehydroquinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   0.0   7.3e-32   1.9e-28      14     214 ..     161     359 ..     147     364 .. 0.89

  Alignments for each domain:
  == domain 1  score: 100.3 bits;  conditional E-value: 7.3e-32
                  HHHHHHTTS-SEEEEEGGG-.TT.THHHHHHHHHHHHHHTTS-EEEE---GGGT-S.S..SS-HHHHHHHHHHHHHCT-SEEEEEGG-.HHGHHHHHH CS
  DHquinase_I  14 aelesgkekaDlvElRlDllketseaedvseeleelrstsdlpliftlrtkaeggrfk..rkseeeylellrtaielgadyvDvElteapeeskkrli 109
                  ++ es+    D++E+ +D ++++++   ++++++ lr++  +p+i+t++ +ae ++ +  + + e+y+ +l++a++lg+++v v l ++++++ +rl 
   KKY15805.1 161 EKYESA---GDAIEVVIDEWSKSHP-VILTKQISLLRRHVGVPIIITVDQTAELEEEQitDFDGETYMAILEHALRLGVEFVSVNL-NLEDDQIRRLN 253
                  455555...9**********87755.8899********99*********987655532238899**********************.77777898999 PP

                  HHHHHTT-EEEEEEE.ESS----HH..HHHHHHHHHHHTT-SEEEEEE--SSHHHHHHHHHHHHHHHHH.T-SS-EEEEE-TTTTGHHHCHHHHHTB- CS
  DHquinase_I 110 eekreggtkvIvSyh.dfegtpsae..elkallekmqalgaDivKiavmaksieDvlrllsltseakee.kdeaplIamamGelGkiSRilgevfGsp 203
                  e+k  g tk+I++y  + ++t s+e  ++++ + +++al +D+v++    ++++D+l  + +  +++++  ++ +lIa+++G+ G++S + ++v+ s 
   KKY15805.1 254 ESK--GFTKIIGHYVeQGSNTRSWEdpSWERQYDRAAALSCDVVRLLKASTDRSDNLGAQVFADHIRRHkGTKNQLIAYNTGPIGRTSLLYNPVL-SR 348
                  999..*********967799*****999***********************************9999987889**********************.** PP

                  EEEEESSS-.. CS
  DHquinase_I 204 vtfasleeaka 214
                  v++ sle +++
   KKY15805.1 349 VSHTSLEPDDN 359
                  *****986655 PP

>> Shikimate_dh_N  Shikimate dehydrogenase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.2   2.2e-21   5.6e-18       1      83 []     388     468 ..     388     468 .. 0.99

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 2.2e-21
                     EEESS-TT-SHHHHHHHHHHHCTSSEEEEEEE-SCCTHHHHHHHHHHTTESEEEE-TTSCCHHHGGSSEE-HHHHHHT--SEE CS
  Shikimate_dh_N   1 viGnpikhSlSPaihnaafkalglngsyeafeveedelekaveelralglaGlnvTiPfKeaviplldelseeAkaigAvNti 83 
                     ++G+++ +SlSPa++naaf+a+gl+++y+a +v+   ++++++  +++++ G+++  P+K avi+ l + s++A+aigAvNti
      KKY15805.1 388 IFGANVLYSLSPAMYNAAFNACGLDHKYTARNVS--TFKEIAQISQDSHFGGASIVRPYKVAVIHELASKSKHAEAIGAVNTI 468
                     79********************************..**********************************************8 PP

>> SDH_C  Shikimate 5'-dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   1.8e-11   4.7e-08       1      27 [.     667     693 ..     667     693 .. 0.98

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 1.8e-11
                 HHHHHHHHHHHHHHHHHS----HHHHH CS
       SDH_C   1 GLgMLveQgaeqFelWTGrepPvevMr 27 
                 GL+ L eQ+ +qFel+TGr++P+  Mr
  KKY15805.1 667 GLETLPEQAIAQFELFTGRKAPRSLMR 693
                 99************************8 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.5   6.3e+03      63      98 ..     157     192 ..     144     205 .. 0.74
   2 !   29.8   0.0   2.1e-10   5.3e-07      15      58 ..     529     572 ..     518     589 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.5
                   EEEGCGHHHHHHT-SEEEE-SSSSS-SB-HHHHHCC CS
  Shikimate_DH  63 alkleelkellaeadvvisataseepilekeeveea 98 
                    +++e+++++ ++++vvi   + ++p++  ++++ +
    KKY15805.1 157 PMDFEKYESAGDAIEVVIDEWSKSHPVILTKQISLL 192
                   567788888888999999999999999988887644 PP

  == domain 2  score: 29.8 bits;  conditional E-value: 2.1e-10
                   EEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT. CS
  Shikimate_DH  15 vlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkg 58 
                    ++iGaG ma+ ++ ++++ g++k+ + NRt+ +a+++a+++++
    KKY15805.1 529 GIVIGAGGMARAAIYAMIQLGCRKIYIYNRTIPNAEKIANHFNA 572
                   589*************************************9965 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   5.3e-07    0.0014      62     131 ..       5      81 ..       1     101 [. 0.77

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5.3e-07
                 S..SEEEEE-TTGGGSHHHHHHHH...HHSEEEEEE--HHHHHHHHHHTTS..SGGGCSCHHHHHHHHHHH.HHHHHH CS
         SKI  62 e..glViatGGGavlseenrellk...ekgiviyLdvsleellerlkadke..RPllqekskeeelleela.ereply 131
                 +  ++Vi +G G+  +   +e+l+   ++++v+yL ++++++++ lk d++  R l++++ +++++ ++++ + e+ y
  KKY15805.1   5 NsrNCVIECGLGSL-TTGVQEHLRvyaTTHPVVYLIRDMTNIQQLLKLDDRsaRLLANGDPTHRRCSNFEYfNLEEHY 81 
                 3449*****99985.5555666665668*******************9999999999988888888877774544444 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   8.1e-06     0.021       4      59 ..     531     583 ..     528     613 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.1e-06
                    EETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHH CS
  F420_oxidored   4 iiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaa 59 
                    +iGaG m++a +  +++ g   ++i++  +r+   ae++a+++++ +++ +ne+++
     KKY15805.1 531 VIGAGGMARAAIYAMIQLG--CRKIYIY-NRTIPNAEKIANHFNAWASSPENEKVV 583
                    57*****************..99***55.***************988888888877 PP

>> ThiC_Rad_SAM  Radical SAM ThiC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.1e-05      0.08     119     180 ..     202     263 ..     159     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.1e-05
  ThiC_Rad_SAM 119 vpiYqaleekekkveelteeellevieeqaedGvdfltiHagvtlellellkkekRltgivS 180
                   + + q++e +e+++++++ e+++ ++e+  + Gv+f+++   ++ + +++l+++k +t+i+ 
    KKY15805.1 202 ITVDQTAELEEEQITDFDGETYMAILEHALRLGVEFVSVNLNLEDDQIRRLNESKGFTKIIG 263
                   334456666999*******************************************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 5459.53
//
Query:       KKY15806.1  [L=452]
Description: putativedialkylglycine decarboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-82  277.5   0.0    1.8e-82  277.2   0.0    1.0  1  Aminotran_3  Aminotransferase class-III


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.2   0.0     1e-86   1.8e-82      11     406 .]      34     442 ..      28     442 .. 0.95

  Alignments for each domain:
  == domain 1  score: 277.2 bits;  conditional E-value: 1e-86
                  EEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHHH CS
  Aminotran_3  11 lvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKlar 108
                  l+it+a+G+ l+  d++r+lD +s+  + ++Gh hP++v+ + + a++l h+   a+ + p+++laekl+ ++pkgl+k ++  +G e++e+A++la+
   KKY15806.1  34 LIITRAHGTHLYTSDNHRILDWTSGQMSCLIGHGHPEIVETITHHAEHLDHLF-SAFISPPVVQLAEKLTGVMPKGLEKAMFLSTGGESNEAAIRLAK 130
                  79*************************************************98.******************************************** PP

                  HHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HH.....HHHHHHHHHHHHHHCHTCCCEEEEEE-SC CS
  Aminotran_3 109 kyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkene.....eeeaalleelealekkkkdevaAvivEpi 201
                          t k +++ ++ ++HG t +a   +++    ++++gp+lp+ + l++p  ++  +++     ++e+ l    + + ++++  +aAvi+Ep 
   KKY15806.1 131 T------VTGKWEVVGLSCSWHGMTGAA--NGAQYLFGRSGVGPTLPGNHVLPAPNAYRSIFRKpdgsyDWETELDFGWSLVDRASAGSLAAVIMEPL 220
                  *......9***************98775..55555699*********************999998777666666666667777*************** PP

                  ETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTS..B--TTTT-HHH CS
  Aminotran_3 202 qgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgs..hgsTfgGnpla 297
                   + gG+ v +++++a++++ c+  ++llivDE qtG+Gr G++f+ eh gv pD++tl+K l++G+plsav++ +e+++  ++++    +T   +pl 
   KKY15806.1 221 LSSGGMLVLPEGYMAAMKKHCEARGMLLIVDEAQTGLGRCGDMFGFEHQGVVPDIVTLSKTLGNGMPLSAVVTSDEIAEKAKENDflFYTTHVNDPLP 318
                  *********************************************************************************99999999********* PP

                  HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC...........HHHHHHHHHCTEE-EEETT....T CS
  Aminotran_3 298 cavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke...........keilkkakekGvlilsaGd....n 380
                  +av l+vlei+ ++ l+e+a+e g++l++g ++l ++y  i++vRg+Glm ++e++++++ +            k++ +k+ + G+    +G+     
   KKY15806.1 319 AAVGLKVLEIVVRDGLVEKARESGEMLRDGFKRLMDRYACIGDVRGRGLMTGVEIVKDRRFEGalgkapnvdlgKALSAKMMDLGLSANLMGNnqfgG 416
                  ************************************************************998***********99****************966666 PP

                  EEEE---TT--HHHHHHHHHHHHHHH CS
  Aminotran_3 381 virllppliitdeeidelleilkkal 406
                  + r++pp +++++ei e+l i+++al
   KKY15806.1 417 IFRIAPPIVVEEKEIIEGLAIFERAL 442
                  89********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2997.63
//
Query:       KKY15807.1  [L=346]
Description: putative 3-dehydroshikimate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-40  136.9   0.0    8.1e-40  136.5   0.0    1.2  1  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.5   0.0   4.5e-44   8.1e-40       1     209 [.      34     288 ..      34     289 .. 0.96

  Alignments for each domain:
  == domain 1  score: 136.5 bits;  conditional E-value: 4.5e-44
                   HHHHHHCT-SEEEEECCTCSHHHHC.............HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTB CS
  AP_endonuc_2   1 laaaaeaGfdgvElfgrdlvpvsel.............sdeelrelrkaldelglriaslslftrfgypdederearreesvdalkraielaaaLGa 84 
                   l+a+a aGf+g+El++++l+ ++                  +++e++k++d+lgl+i ++++f++f++++   +++++e++++++  +i +++a G+
    KKY15807.1  34 LKAIAGAGFTGIELSFPNLQEFAKThlgrdigatdyeaLSIAAAEVKKMCDDLGLEIMLMQPFANFEGWER--GSKESEDAFERAAGWINIMKAAGC 128
                   6899******************988************999999*************************988..677799****************** PP

                   SEEEEEBCCGBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTCHHHHHHHHHHTTTTEEEEEEHHHHHHH............. CS
  AP_endonuc_2  85 pllvlhpGtagagpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgdeelarlldavdspnvgvclDtgHllia............. 168
                   ++l++++      +  +  ++ +++a++l +l++ ++++g +la+E+++++++ + ++++++++++v+ pn+g+clDt+++                
    KKY15807.1 129 DTLQVGST-----DAPDVTSDKQQMARDLADLCELLADHGLRLAYENWCWATHAPTWSDVWDIVKRVEKPNIGLCLDTFQTAGGefadpttesgvie 220
                   ******55.....999999****************************************************************************** PP

                   ...........TTTHHHHHHHHHGGEEEEEE.EESS................TTTTSSTTEESTTSSS CS
  AP_endonuc_2 169 ...........eedvddalraladrikhvHikDakg................dlgagrdrhvpigeGe 209
                              +  ++++ +  +d+i +++i+Da++                ++ +++d++ ++ +G 
    KKY15807.1 221 sksleevkrdyRSSIAGMAKLPKDKIYLLQISDAYKpkkpianktnesglrpRGQWSHDYRPMPYDGG 288
                   *******888888888888888899*****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.53
# Mc/sec: 1949.38
//
Query:       KKY15808.1  [L=486]
Description: putative 6-phosphogluconate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-83  279.1   0.0    5.6e-83  278.7   0.0    1.1  1  6PGD             6-phosphogluconate dehydrogenase, C-terminal
    7.3e-34  117.2   0.0    1.1e-33  116.6   0.0    1.3  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
      5e-05   23.8   0.0     0.0003   21.3   0.0    2.2  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
    0.00023   21.1   0.0    0.00051   20.0   0.0    1.6  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
     0.0094   15.9   0.0      0.017   15.1   0.0    1.4  1  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
  ------ inclusion threshold ------
      0.016   15.4   0.1      0.035   14.3   0.1    1.6  1  NAD_binding_11   NAD-binding of NADP-dependent 3-hydroxyisobu
      0.025   14.8   0.0       0.12   12.6   0.0    1.9  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.038   13.3   0.0       0.07   12.5   0.0    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.072   12.7   0.0       0.36   10.5   0.0    2.0  1  ApbA             Ketopantoate reductase PanE/ApbA
       0.17   11.5   0.0       0.29   10.7   0.0    1.3  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family


Domain annotation for each model (and alignments):
>> 6PGD  6-phosphogluconate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.7   0.0   3.1e-86   5.6e-83       1     279 [.     184     475 ..     184     482 .. 0.91

  Alignments for each domain:
  == domain 1  score: 278.7 bits;  conditional E-value: 3.1e-86
        6PGD   1 GhyVKmvHNGieygdmqliaEaydllkkvlglsneeiaevFeeWnkg.el.esyLieitakilrkkdeedgk....plvdkil.DkagqkGTgkwtvqe 92 
                 GhyVKm+HNGie+g+m +++Ea+++++++lg+s+++ia+++eeW+ + el +++Li+i+ +i+r+kd+e+++    ++ dk++ D+++++GTg wt++e
  KKY15808.1 184 GHYVKMIHNGIEQGMMAALCEAWSVMHNALGMSYQDIAKTWEEWDAQgELsDNFLISIGIDICRTKDPEKKQfvldEIKDKVVqDVDETEGTGAWTCEE 282
                 9*******************************************98889999****************888633335556666688999********** PP

        6PGD  93 alelgvpvptiaeavfaRllSslkeervkaskllkeeee..keeedkeefiedlrkAlyaskivsYaqglellkaaskeygwnlnlaeiariWrgGCiI 189
                 +++l+ p+ptia+a+++Rl S++ ++r+k+ ++l e+ +  ++ +  ++f+ed+r A+ya+++ +++qgl+l ++as+e+gw++n+a+++ iWr+GCiI
  KKY15808.1 283 GMRLHEPIPTIAAAHQSRLGSAYSSRREKVVSALGEPLAnpTKVQGDDSFLEDVRLAVYAAFLSAFTQGLTLCAKASNEQGWGINFADVIDIWRAGCII 381
                 **********************************65433456667789*************************************************** PP

        6PGD 190 rakf.ldkikeafek.npelen.llldpefakelkealealrrvvalaveagipvpalsaalaYldslrs.erlpanliqaqrDyFGahtyerv 279
                 r+   +d i++a+++  ++++n  + +p++  e+k+++ +l+++v +avea+  +p++sa+l+Yl+ +++ e+lp+ +++a+ DyFG h+++ +
  KKY15808.1 382 RSGAiADLIQKAYQDgGKDIMNyPVESPSILGEFKKCYVSLKKTVGKAVEADATIPSISATLEYLKNITTnEDLPTVFMEAELDYFGYHMFDLK 475
                 **986899******984455551577899************************************99865278******************976 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.6   0.0   6.3e-37   1.1e-33       1     154 [.       6     176 ..       6     179 .. 0.96

  Alignments for each domain:
  == domain 1  score: 116.6 bits;  conditional E-value: 6.3e-37
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT........EEE-SSHHHHHHHC...SEEEE-SSSHHHHHHHHHSHCCC--TT-E CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg........akaaesieelvasl...dvvitmvkagkavdeviegllealkkgdi 85 
                    k+g+iG+G MGs + l + ++g ++++ + ++++++  +++         +k++++ ee+++sl   ++ ++ v++g+  d+++++ll++++kgdi
     KKY15808.1   6 KVGMIGTGSMGSMLTLLMSENGVEISALDPNEKNLQMCMDDAnkaglgnkVKTFKEYEEFCESLprpRIFVLSVPHGSVGDSIVDSLLPYVEKGDI 101
                    69*************************************9988999************************************************** PP

                    EEE-S---HHHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEE.......EEE CS
  NAD_binding_2  86 lidgstsspedtrelakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaiga.......kvt 154
                    ++d+s+ ++++t ++++ l  +g+kf++ +VSGG + A++G+ si +GG+e+a++++ p+l++i+a       +vt
     KKY15808.1 102 VLDFSNEHYASTHRRQALLLPRGVKFVGSGVSGGYQSARAGP-SISPGGDEDALDTLMPLLQKIAAkdkkgnpCVT 176
                    ******************************************.**********************97766666665 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.7e-07    0.0003       1      96 [.       6     107 ..       6     108 .. 0.90
   2 ?   -1.0   0.0       1.6   2.8e+03      68      94 ..     214     241 ..     212     243 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.7e-07
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC.......-EEECECHHHHHH...H-SEEEE-S-HHHH.HHHHHHCGHHH CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg.......vkvtavdneeaae...eadvvvlavkpedv.eevlselakda 85 
                    k+g iG+G+mg+ l++ ++++g    ei  a ++n++ ++   ++++       vk+++ ++ee +e   +  + vl+v+   v ++++++l +  
     KKY15808.1   6 KVGMIGTGSMGSMLTLLMSENG---VEIS-ALDPNEKNLQMCMDDANkaglgnkVKTFK-EYEEFCEslpRPRIFVLSVPHGSVgDSIVDSLLPYV 96 
                    79********************...****.99********9999999999**9988888.9999999888899******99887356788889999 PP

                    HTTSEEEEESS CS
  F420_oxidored  86 lkgklvisvla 96 
                     kg +v++ ++
     KKY15808.1  97 EKGDIVLDFSN 107
                    99999999877 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.6
                    -S-HHHHHHHHHHC.GHHHHTTSEEEEE CS
  F420_oxidored  68 avkpedveevlsel.akdalkgklvisv 94 
                     + ++d++++++e+ a+ +l++ ++is+
     KKY15808.1 214 GMSYQDIAKTWEEWdAQGELSDNFLISI 241
                    5678999999999988899999999998 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.8e-07   0.00051       1      46 [.       6      52 ..       6      70 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.8e-07
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH.HH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekalekiek.sl 46
                kv+ iG+G mG+ ++ ++ ++g+e+  +d +e+ l+ +++ ++k  l
  KKY15808.1  6 KVGMIGTGSMGSMLTLLMSENGVEISALDPNEKNLQMCMDDANKaGL 52
                79***********************************9999887433 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   9.4e-06     0.017       1      95 [.       6      98 ..       6     107 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9.4e-06
                    -EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSSBTTTBTT----TTEEEES-HHHHHTT--EEEE---HHHHH.HHHHHHCCC--T CS
  NAD_Gly3P_dh_N  1 kiavlGaGswGtalAkvlaenghevrlwvreeelieeineehenvkyLpgiklpenlvattdlaealkgadiivlvvPsqalr.evlkklkgllkk 95
                    k++++G+Gs G+ l  +++eng e++    +e+ ++ +  +  n++ L +    ++ + ++++ e+l + +i vl vP+  +  +++++l ++++k
      KKY15808.1  6 KVGMIGTGSMGSMLTLLMSENGVEISALDPNEKNLQ-MCMDDANKAGLGNK--VKTFKEYEEFCESLPRPRIFVLSVPHGSVGdSIVDSLLPYVEK 98
                    799***********************9999999886.55677899999984..4789999******************987751455666666555 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1     2e-05     0.035       1      36 [.     182     218 ..     182     233 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2e-05
  NAD_binding_11   1 GaGqavKlvnnlllainlaaasEalvlaek.aGldpe 36 
                     G+G+ vK+++n +    +aa++Ea  +++  +G+  +
      KKY15808.1 182 GSGHYVKMIHNGIEQGMMAALCEAWSVMHNaLGMSYQ 218
                     9***********************8766542677666 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.8e-05      0.12       1      75 [.       7      78 ..       7      90 .. 0.89
   2 ?   -0.7   0.0      0.91   1.6e+03      60      80 ..      90     109 ..      81     116 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.8e-05
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvn 75
                     v +iG Gs+G+ ++ l+++++ v  ei   d+++++l+   ++a++  + ++  + ++ye+  ++l + + +v++
       KKY15808.1  7 VGMIGTGSMGSMLTLLMSENG-V--EISALDPNEKNLQMCMDDANKAGLGNKVKTFKEYEEFCESLPRPRIFVLS 78
                     689*********999999997.5..7************************9999999999988887777777766 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.91
                      HHHHHHHHTTSSEEEE-SSGG CS
  Sacchrp_dh_NADP  60 eavLaallkegdlvvnlsppi 80 
                      ++ L +++++gd+v++ s  +
       KKY15808.1  90 DS-LLPYVEKGDIVLDFSNEH 109
                      45.78899999*999988665 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.9e-05      0.07      37      73 ..       5      41 ..       3      88 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.9e-05
                  SEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH CS
  2-Hacid_dh_C 37 ktvGiiGlGrIGqavakrlkafgmkviaydrskkkee 73
                  k+vG+iG+G++G+ +  ++++ g+++ a d+++k+ +
    KKY15808.1  5 KKVGMIGTGSMGSMLTLLMSENGVEISALDPNEKNLQ 41
                  89******************************98655 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0002      0.36       3     101 ..       9     105 ..       7     108 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0002
                 EES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETT.CEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHH.HGGGECTCEEE CS
        ApbA   3 ilGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseg.geeilrppealsaeekselepidlvivtvKayqteealee.ikplldpntvv 98 
                  +G+G++Gs+l   ++++g ++  ++ ++  l+       + ++ g g+++  ++e  ++   ++l    +++++v+  ++ + + + + p++++  +v
  KKY15808.1   9 MIGTGSMGSMLTLLMSENGVEISALDPNEkNLQ---MCMDDANKAGlGNKVKTFKEYEEFC--ESLPRPRIFVLSVPHGSVGDSIVDsLLPYVEKGDIV 102
                 69************************9994444...4444444444555555566666665..679999999999999999886666699999999888 PP

                 EEE CS
        ApbA  99 lll 101
                 l +
  KKY15808.1 103 LDF 105
                 765 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00016      0.29       2      39 ..       6      43 ..       5      52 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
                    EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHH CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeighevigvDideekvdkl 39
                    k+ +iG+G +G +  ++++e g+e+  +D +e+  ++ 
      KKY15808.1  6 KVGMIGTGSMGSMLTLLMSENGVEISALDPNEKNLQMC 43
                    899*****************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3259.54
//
Query:       KKY15809.1  [L=332]
Description: hypothetical protein UCRPC4_g06128 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-38  133.1   5.3    3.9e-38  131.3   5.3    1.7  1  DUF1275   Protein of unknown function (DUF1275)
  ------ inclusion threshold ------
      0.095   11.7   0.2       0.29   10.1   0.2    1.8  1  RELT      Tumour necrosis factor receptor superfamily member 
        7.2    7.0   7.9        9.5    6.6   0.1    3.0  4  DUF4064   Protein of unknown function (DUF4064)


Domain annotation for each model (and alignments):
>> DUF1275  Protein of unknown function (DUF1275)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   5.3   6.5e-42   3.9e-38       2     191 ..      91     315 ..      90     316 .. 0.81

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 6.5e-42
     DUF1275   2 llllafvaGllDavaflaaggvfvsaqTGNtvllglalaegna....kaalaalvsllaFvlGaalagllarrggrrrrlvllle.....allllaaal 91 
                 l++l f++Gl+D+vaf +++ +fvs+qTGNt++ +l+l+++ +    +++l +l+s++aF++G  +  ++      ++ ++l l            a  
  KKY15809.1  91 LVILFFISGLVDSVAF-NSWSCFVSMQTGNTIFTALGLTRQPVsnhpQQYLKSLTSIGAFCVGLQTICIIV----AATLVTLGLVsnqasR-----A-- 177
                 899*************.9*******************877555666799999***********97777775....2222222222122221.....1.. PP

     DUF1275  92 lvpagsvsp...........................lalallafamGlqnalfsr.lsgaeitttvlTgnltdlgidlarll.kkrk............ 149
                                                     +++allaf++++q++l sr l+ +e++ +vl++++ d ++d++++l ++++            
  KKY15809.1 178 --------GqfssgsakatdgeydsitrgnlnwldlVPIALLAFQASGQVCL-SRlLGINELPAIVLSTLYYDYMSDVTEYLpHEKGtpiwikvrdevf 267
                 ........12223334445666778889999999999***************.888**************************85553468888877665 PP

     DUF1275 150 la..rnrrlaiilafllGavvGallvks....aaalwlaaallllval 191
                 ++  rnrr+  i++++lG+++G+++++s     +alwlaa l+llv++
  KKY15809.1 268 MNekRNRRFWGIAGLFLGGLIGGYMFRSsarmWGALWLAASLKLLVVF 315
                 2167****************************************9986 PP

>> RELT  Tumour necrosis factor receptor superfamily member 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   4.9e-05      0.29       3      16 ..      88     101 ..      86     103 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 4.9e-05
        RELT   3 vfvLVpvFflmGLl 16 
                 +++LV++Ff+ GL+
  KKY15809.1  88 IYILVILFFISGLV 101
                 8************7 PP

>> DUF4064  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.32   1.9e+03      88      99 ..      90     101 ..      66     109 .. 0.71
   2 ?    0.3   2.7      0.14   8.5e+02      42      77 ..     128     170 ..      87     176 .. 0.55
   3 ?    3.7   0.3     0.013        75       8      55 ..     143     190 ..     137     213 .. 0.80
   4 ?    6.6   0.1    0.0016       9.5      73     100 ..     284     311 ..     269     314 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.32
     DUF4064  88 vsGilfiiaail 99 
                 +  ilf+i++++
  KKY15809.1  90 ILVILFFISGLV 101
                 334555555544 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.14
     DUF4064  42 e.......qalsgedasavleflstllivlgvialiaivlgiv 77 
                 +       +++  +  +++ +f  +l ++++++a  +  lg+v
  KKY15809.1 128 TrqpvsnhPQQYLKSLTSIGAFCVGLQTICIIVAATLVTLGLV 170
                 2444444455666666666666666666777766666666666 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.013
     DUF4064   8 LglIGgilgillglllllflfllssgefsqelteeqalsgedasavle 55 
                 L+ IG+ +  l ++++++++ l+  g  s++ +  +++s   a+a+ +
  KKY15809.1 143 LTSIGAFCVGLQTICIIVAATLVTLGLVSNQASRAGQFSSGSAKATDG 190
                 778999999999999999999999999999988887777777766654 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0016
     DUF4064  73 vlgivgalllkknkkvsGilfiiaails 100
                 + g++g ++ +++ +++G+l ++a++ +
  KKY15809.1 284 LGGLIGGYMFRSSARMWGALWLAASLKL 311
                 3489******************998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2260.06
//
Query:       KKY15810.1  [L=851]
Description: putative short chain dehydrogenase reductase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-30  104.1   0.0    1.2e-29  103.2   0.0    1.3  1  adh_short        short chain dehydrogenase
    9.3e-22   77.7   0.0    1.8e-21   76.8   0.0    1.5  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    5.1e-21   75.8   0.0    4.4e-20   72.7   0.0    2.4  2  SET              SET domain
    2.1e-10   40.8   0.0      1e-08   35.3   0.0    2.3  2  KR               KR domain
    1.7e-08   35.2   0.6    1.1e-07   32.6   0.5    2.4  1  Rubis-subs-bind  Rubisco LSMT substrate-binding
      2e-05   24.2   0.0      4e-05   23.2   0.0    1.5  1  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.037   13.6   0.0    1.7  2  NmrA             NmrA-like family
       0.06   12.1   0.0        0.1   11.3   0.0    1.3  1  SAPS             SIT4 phosphatase-associated protein
      0.077   12.1   0.0       0.18   10.8   0.0    1.6  1  RmlD_sub_bind    RmlD substrate binding domain
       0.11   12.6   0.1       0.32   11.1   0.1    1.8  1  DapB_N           Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.0   6.6e-33   1.2e-29       4     183 ..      42     221 ..      41     227 .. 0.98

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 6.6e-33
                 EEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHHH CS
   adh_short   4 lvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseeewe 102
                 l+ Ga++ +Gr +ak+ ++ +  v +v+r+  +    ++  ++++++++   +Dv+  + v ++ve +++++g+ldv+ n+ G    g+ ++ +e e++
  KKY15810.1  42 LIFGATGHMGRSVAKAALNHNDPVCAVGRTHFNTMDSMAAWHSDSNRYMGTLCDVRVPDTVANVVESCIAHFGRLDVVANCSGFGVIGACEDQDEYEIR 140
                 789****************************9999999999999******************************************************* PP

                 HHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS CS
   adh_short 103 rvievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvd 183
                 + +e+N++g++++++a lp++ ++++Gr    sS+ g  +v+g+ +Y+A+K av+gl++s+  e+ + +i+ + vaPG ++
  KKY15810.1 141 DQFETNFMGTLNIIQATLPYFREHNRGRYLIFSSTSGALGVPGLGPYCATKYAVEGLIESMLYEVDQFNIKATLVAPGHIR 221
                 ******************************************************************************986 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0     1e-24   1.8e-21       1     176 [.      45     222 ..      45     234 .. 0.94

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 1e-24
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Ga   +Gr +Aka+ ++   v+++ +   +  +++++ +++ ++ +   cDV+ +++v+++ve + ++fg+lD++ n+ g+     g +++ ++ e+
    KKY15810.1  45 GATGHMGRSVAKAALNHNDPVCAVGRTHFNtMDSMAAWHSDSNRYMgTLCDVRVPDTVANVVESCIAHFGRLDVVANCSGFGVI--GACEDQDEYEI 139
                   56667899999999999999999999998878888888888888878************************************9..*********** PP

                   HHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHC CS
  adh_short_C2  96 draldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikT 176
                   ++ +++n+ +++++++a lp+++e+  g+ +  ss+++  +vp+   y+a+K a+e+l+ ++ +e+ + +i+   v+pg i+ 
    KKY15810.1 140 RDQFETNFMGTLNIIQATLPYFREHnrGRYLIFSSTSGALGVPGLGPYCATKYAVEGLIESMLYEVDQFNIKATLVAPGHIRR 222
                   ********************9988889*****************************************************985 PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.65   1.2e+03      54      86 ..     326     358 ..     242     397 .. 0.65
   2 !   72.7   0.0   2.5e-23   4.4e-20       1     169 []     416     635 ..     416     635 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.65
                 HHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  54 elakasastllqklakdqkqaekedtdaalkas 86 
                 e+    +s+  +k +kd++q+ek + d + + +
  KKY15810.1 326 EQDTPMSSKDESKEEKDEDQDEKGEGDEKDAGE 358
                 333333333333333333333333333333333 PP

  == domain 2  score: 72.7 bits;  conditional E-value: 2.5e-23
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH..............................HTEEEEEXGGXX.GGSX.HHHHHHHTTSSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................xxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele..............................aylfslpeapkn.laft.kelakasastllqkl 67 
                 GrG++At dI++ge ++++p+++il +++++++++                               +y++ lp+++ + ++++ ++l +++as  ++k+
  KKY15810.1 416 GRGLVATTDIEEGEDLFRIPRHLILDSQTSNLRQNLgdkldgldpwmsliltliyeklqgdnskwaPYIRLLPAKFDTlMFWSkEDLSELQASAVVGKI 514
                 9*********************************99*************************************88777678879*************** PP

                 HHHHHHHHHHHHHHTHHHHHHHXTTTSX..XXHCCCCCHCCCHEE.....EETEEEEEECCC.................GTTGGGCEEXSSSSEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx.....xxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxx RF
         SET  68 akdqkqaekedtdaalkasskaesdlna..skpeagafsaiagys.....idaralksgnga.................gplarflNHsCdpNcnltvq 142
                 +k+ ++     +   + +s+     l    ++ e   +++ ag++     +d + +                       +p+a++lN + + N ++  q
  KKY15810.1 515 GKKNAESAFTSELLPIIRSHPDLFPLTQkkTQDEVIRRAHLAGSCvmayaFDIEKDDQA--NddssfvtddeddpakgmVPFADMLNADAEKNNAHLAQ 611
                 *9988877776666666666555555424433333333555555533344442222222..133456677888888899***********999989999 PP

                 EETTSSEEEEEESSXBXTTEEEEEXTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 143 nvlrgprvavfAtrdIkkGeEltidYg 169
                     ++++++ +tr+I +G+E++++Yg
  KKY15810.1 612 E---DNYFTMKSTRPIVAGDEIFNTYG 635
                 9...**********************8 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   5.8e-12     1e-08       4     162 ..      42     200 ..      40     212 .. 0.91
   2 ?    3.0   0.0     0.048        86      37      95 ..     542     601 ..     518     621 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 5.8e-12
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 li G++G++G+++a+  +++ +  +  ++R+ + +    + +a++++   + +   +Dv  +d v++++e++ a+++++  v ++ g+   ++ e++++
  KKY15810.1  42 LIFGATGHMGRSVAKAALNH-NDPVCAVGRT-HFNTM--DSMAAWHSDSNRYMGTLCDVRVPDTVANVVESCIAHFGRLDVVANCSGFGVIGACEDQDE 136
                 89*************97776.678999****.33333..3689999***************************************************** PP

                 HHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHH CS
          KR 103 edleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaey 162
                  +++  ++  + G+ n+ +++ +    ++    ++fSS +g lg +g + Y a+   +++l+e+
  KKY15810.1 137 YEIRDQFETNFMGTLNIIQATLPyfreHNRGRYLIFSSTSGALGVPGLGPYCATKYAVEGLIES 200
                 *******************98776766888899*********************9999988875 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.048
                 --HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS.S---EEEE-------- CS
          KR  37 adedskaliaelealgaevevvaaDvsdkdavealleeikaee.ppikGvihaAgvlrdk 95 
                 +++++++ i++ +  g  v+++a D+ + d+ +   + ++++e +p kG +  A +l+ +
  KKY15810.1 542 QKKTQDEVIRRAHLAGSCVMAYAFDIEKDDQANDDSSFVTDDEdDPAKGMVPFADMLNAD 601
                 566777899999999*****************9999988888889999999999888744 PP

>> Rubis-subs-bind  Rubisco LSMT substrate-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.5   6.3e-11   1.1e-07      76     129 .]     744     806 ..     551     806 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 6.3e-11
  Rubis-subs-bind  76 aaalrllldrckalLsaypttleeDeellkdadaavtn.........rerlavqlrvgEkrIL 129
                      +  +++l+  + +++ +y+t+leeD + l++ ++++ +         r ++a+q+r+gEk+IL
       KKY15810.1 744 VSEISFLHIVLVNRIGEYATSLEEDSKFLESLTTDQGSatdshtkqrRLKMALQVRIGEKEIL 806
                      667899999************************99888******999999************9 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.2e-08     4e-05       2     118 ..      42     178 ..      41     219 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.2e-08
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-..STTTTCHHCHHC..........EEEE--TT-HH..HHHHHHHHH.T-SEEEE--S---HHHHHHSHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrl..ssasntarledl..........elveldltdrs..alerlfkee.qpdavihlAavggvaassedpa 85 
                 l+ GatG +G+ ++ka l+++  v ++ r   ++ +  a    +          +l+++ + d +   +e  ++ + + d+v ++ + g ++a  ++ +
  KKY15810.1  42 LIFGATGHMGRSVAKAALNHNDPVCAVGRThfNTMDSMA----AwhsdsnrymgTLCDVRVPDTVanVVESCIAHFgRLDVVANCSGFGVIGACEDQDE 136
                 799******************666555555004333333....2455689999988888888877657888899999********98888888888877 PP

                 ....HHHHHHTHHHHHHHHHHH....HHTCT.EEEEEEEGGG CS
   Epimerase  86 ....dfieknlqgtlnlleaar....kagvk.rllflsSsev 118
                     d +e+n++gtln+++a      +++    l+f s+s  
  KKY15810.1 137 yeirDQFETNFMGTLNIIQATLpyfrEHNRGrYLIFSSTSGA 178
                 111245679**********99866666665525556666655 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.1e-05     0.037       2      31 ..      42      71 ..      42      86 .. 0.90
   2 ?   -3.7   0.0         4   7.2e+03     120     142 ..     189     218 ..     186     219 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.1e-05
                EESSTTSHHHHHHHHHHHHHT-EEEEEES- CS
        NmrA  2 lviGaTGrqGksvvrallkaghkvralvRd 31
                l++GaTG++G+sv++a+l+++ +v a+ R 
  KKY15810.1 42 LIFGATGHMGRSVAKAALNHNDPVCAVGRT 71
                79**********************998775 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4
                 HHHHHHHHHHHHC.......TS-EEEEEE- CS
        NmrA 120 dsKaeieeyvral.......gipytfvyag 142
                 ++K+ +e  ++++        i +t v++g
  KKY15810.1 189 ATKYAVEGLIESMlyevdqfNIKATLVAPG 218
                 689999999999988888889999998876 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.8e-05       0.1     221     353 ..     275     393 ..     257     396 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.8e-05
        SAPS 221 kiveLiaeLLhcsnmallnekkgeeivkerDevrerlleeltseeealedvsdeaskeesaesedltdkdedvsleesksakdenkesdesesdtaees 319
                 k +eL  +L hcs   l    ++  +   rD +r+ ++e +     + ++++        + ++d+  + +d s+ee++++   ++e+ e ++++a e+
  KKY15810.1 275 KAAELTWQLAHCSFPPLRLLLGSYTVDSIRDRLRSIIEEIE-----EWKHLH------FPPMEQDTPMSSKDESKEEKDED---QDEKGEGDEKDAGEA 359
                 78899999999999988888788888888888887777432.....223332......22222222222222222222222...335566667779999 PP

        SAPS 320 seededdasseesalaeeteeklrkkpvvGDlLK 353
                 ++ed+ +++   ++l+  + ++    pv+ D+LK
  KKY15810.1 360 NDEDKMEDEGFVPYLSVMQPSQDGDAPVIRDFLK 393
                 9999999999999999999999999999999999 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0001      0.18       4      86 ..      42     154 ..      40     176 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0001
                    EEESTTSHHHHHHHHHCTTTSEEEEEE-TT.....................T--TTSHHHHHHHH.....HHH--SEEEE------HHHHHHSHH. CS
  RmlD_sub_bind   4 lvtGanGqlGseLakqlaeeglevlaltre.....................eldltdaeavaell.....keakpdvvvnaAAytavDkaEseee. 72 
                    l++Ga+G +G+ +ak++ +++  v+a++r+                      +d++ +++va+++     +  + dvv n+  +  + ++E++ e 
     KKY15810.1  42 LIFGATGHMGRSVAKAALNHNDPVCAVGRThfntmdsmaawhsdsnrymgtLCDVRVPDTVANVVesciaHFGRLDVVANCSGFGVIGACEDQDEy 137
                    89*****************999*******9999999999999999999999899999999999984444333477899999999999999988651 PP

                    ...HHHHHHTHHHHHHH CS
  RmlD_sub_bind  73 ...aayavnaeavealA 86 
                        +++ n  ++ ++ 
     KKY15810.1 138 eirDQFETNFMGTLNII 154
                    11134556666666655 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00018      0.32       5      36 ..      43      72 ..      41     126 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00018
                EETTTSHHHHHHHHHHHHSTTEEEEEEEETTC CS
      DapB_N  5 vvGasGrmGkevvkaveeaedlelvaavdrke 36
                ++Ga+G mG++v+ka+ +++d   v+av r++
  KKY15810.1 43 IFGATGHMGRSVAKAALNHNDP--VCAVGRTH 72
                89**************997664..44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (851 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       893  (0.0498076); expected 358.6 (0.02)
Passed bias filter:                      672  (0.0374812); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.46
# Mc/sec: 5506.26
//
Query:       KKY15811.1  [L=565]
Description: putative histone acetyltransferase complex component epl1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-21   76.9   0.1    2.2e-21   76.9   0.1    2.6  2  EPL1      Enhancer of polycomb-like


Domain annotation for each model (and alignments):
>> EPL1  Enhancer of polycomb-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.1   1.2e-25   2.2e-21       2     156 ..      13     156 ..      12     157 .. 0.83
   2 ?  -10.5  16.6         1   1.8e+04      43     125 ..     368     505 ..     292     505 .. 0.53

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 1.2e-25
        EPL1   2 qprldikkkLkviseeevdgldeseseeeiseknsnkensqqavetgvdkkeenekhqviaaakkkesssasskeslkkeelkLpkP............ 88 
                  ++l  k++ ++++e+e++ ++ ++++              ++vetgv++ e+ne h ++aa +++     +    + ++++++p+P            
  KKY15811.1  13 PKKLVYKQNVPIFRENEIELVEYDPRQ-------------ASTVETGVEAAEQNEYH-LVAAINASLPGAGQ----SGVKDAYIPTPptvdasipydal 93 
                 678889999999999966666544332.............2457899*********9.44444444443333....357789***************** PP

        EPL1  89 ...sfreferppssyirfsekseeelddeveYdMDEeDekWLeelnekrkkegvekisediFEivmdrlEk 156
                    +f++    p++yir+s+++e++   +++Y+MDEeDe  L ++nek k++   ++sed+FE vmd +E+
  KKY15811.1  94 ypkKFQQ----PATYIRSSATVEDCS--GAQYCMDEEDEIALAKINEKVKES--GPCSEDQFEEVMDFFEE 156
                 *******....**************9..********************7776..9***************7 PP

  == domain 2  score: -10.5 bits;  conditional E-value: 1
        EPL1  43 qavetgvdkkeenekhqviaaakkkesssasske.........................slkkeelkLpkP............................ 88 
                 q+ve+  + +                       e                         + +   ++Lp+P                            
  KKY15811.1 368 QNVEKHIKWN-----------------------EgfvdktkapltptsdkgfgsesnfrQAMPATEYLPTPpasvseeaadlespshknpppsqeppyp 443
                 1111111111.......................122222222333333445566666665556667777776765555555555555555555555555 PP

        EPL1  89 ................sfre.........ferppssyirfsekseeelddeveYdMDEeDek 125
                                 sfr+         f+r   s  +   + +++l d+ +Yd D++De+
  KKY15811.1 444 fryatppaddasqmmpSFRRrvgrggrlmFDRRMPSRPKEHNEEDDNLFDRYKYDSDDDDEE 505
                 54444444444444444444666666666555533333334444677778*******99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       974  (0.0543254); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 3624.42
//
Query:       KKY15812.1  [L=188]
Description: putative calcineurin subunit b [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-26   90.3  13.1    2.6e-07   29.7   0.7    4.4  4  EF-hand_1      EF hand
    1.5e-21   76.6  13.2    2.3e-12   47.1   1.2    2.7  3  EF-hand_7      EF-hand domain pair
    5.6e-20   69.5   5.7    5.3e-05   22.8   0.1    4.4  4  EF-hand_6      EF-hand domain
    1.4e-18   65.4  10.5    3.6e-07   29.4   0.3    4.4  4  EF-hand_5      EF hand
      8e-14   51.2  13.4    3.8e-05   23.4   0.8    4.7  5  EF-hand_8      EF-hand domain pair
    2.5e-06   27.8   0.0     0.0043   17.3   0.0    2.3  2  SPARC_Ca_bdg   Secreted protein acidic and rich in cysteine C
    2.6e-05   24.1   7.3      0.012   15.5   0.2    3.8  4  EF-hand_4      Cytoskeletal-regulatory complex EF hand
  ------ inclusion threshold ------
      0.019   15.2   0.8       0.12   12.6   0.8    2.3  1  Dockerin_1     Dockerin type I domain
      0.037   14.3   0.2        0.8   10.1   0.1    2.7  3  EF-hand_9      EF-hand domain
      0.058   12.7   0.5       0.23   10.8   0.0    1.8  2  Anthrax-tox_M  Anthrax toxin lethal factor, middle domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   9.5e-09   1.7e-05       2      25 ..      40      63 ..      39      65 .. 0.92
   2 !   18.9   0.2     4e-07   0.00071       4      28 ..      74      98 ..      72      99 .. 0.91
   3 !   24.4   0.3   7.3e-09   1.3e-05       2      29 .]     109     136 ..     108     136 .. 0.92
   4 !   29.7   0.7   1.5e-10   2.6e-07       2      27 ..     150     175 ..     149     177 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 9.5e-09
                HHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkel 25
                l++ F+++DkD++G+I+++Ef++l
  KKY15812.1 40 LRKRFMKLDKDNSGTIERDEFLSL 63
                7899*****************875 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 4e-07
                HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  4 eiFrefDkDgdGkIdfeEfkellkk 28
                +++++fD Dg G +df+Ef++ l++
  KKY15812.1 74 RMIAIFDEDGGGDVDFQEFVSGLSA 98
                79******************99875 PP

  == domain 3  score: 24.4 bits;  conditional E-value: 7.3e-09
                 HHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkkl 29 
                 l+ +F+++D D+dG+I+  E+  +lk++
  KKY15812.1 109 LRFAFKVYDIDRDGYISNGELFIVLKMM 136
                 899******************9999875 PP

  == domain 4  score: 29.7 bits;  conditional E-value: 1.5e-10
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 +++ ++e+D DgdGkI+feEf ++++
  KKY15812.1 150 VDKTIMEADMDGDGKISFEEFTRMVE 175
                 7999*******************986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.3   4.4e-07    0.0008      37      68 ..      28      62 ..      16      65 .. 0.73
   2 !   30.2   0.6   2.6e-10   4.7e-07       3      68 ..      39      94 ..      37      97 .. 0.87
   3 !   47.1   1.2   1.3e-15   2.3e-12       1      70 [.     106     174 ..     106     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.4e-07
   EF-hand_7 37 egsklsdeelellfkef...DtdkdGvisfdEFlk 68
                 gs+++++e+++l k f   D+d++G+i +dEFl 
  KKY15812.1 28 SGSNFDRDEVDRLRKRFmklDKDNSGTIERDEFLS 62
                67778888877666666666888888888888875 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 2.6e-10
   EF-hand_7  3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68
                +l+ +F +lD+d++g ++++e+l+l +         ++l      +++  fD d+ G ++f+EF+ 
  KKY15812.1 39 RLRKRFMKLDKDNSGTIERDEFLSLPQ------VSSNPLAT----RMIAIFDEDGGGDVDFQEFVS 94
                7999*****************996666......66666665....9******************85 PP

  == domain 3  score: 47.1 bits;  conditional E-value: 1.3e-15
   EF-hand_7   1 eeklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkef....DtdkdGvisfdEFlkly 70 
                 eekl+ aFk +D d+dgy++  el  +l+        gs+l d +l++++++     D d+dG+isf+EF +++
  KKY15812.1 106 EEKLRFAFKVYDIDRDGYISNGELFIVLKM-----MVGSNLKDMQLQQIVDKTimeaDMDGDGKISFEEFTRMV 174
                 69*********************9989998.....99***99977666666655556*************9876 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   5.3e-08   9.4e-05       1      24 [.      39      62 ..      39      66 .. 0.92
   2 !   11.7   0.1   0.00011       0.2       8      27 ..      78      97 ..      75     103 .. 0.90
   3 !   22.8   0.1   2.9e-08   5.3e-05       1      28 [.     108     135 ..     108     142 .. 0.90
   4 !   12.8   0.0   4.9e-05     0.088      10      26 ..     158     174 ..     153     182 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 5.3e-08
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrk 24
                +lr+ F+++Dkd++G+i ++E+ +
  KKY15812.1 39 RLRKRFMKLDKDNSGTIERDEFLS 62
                6899******************86 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00011
   EF-hand_6  8 lfDkdgdGkidaeElrkalr 27
                +fD dg G +d++E+++ l+
  KKY15812.1 78 IFDEDGGGDVDFQEFVSGLS 97
                79**************9998 PP

  == domain 3  score: 22.8 bits;  conditional E-value: 2.9e-08
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrk 28 
                 +lr aFk +D d+dG+i+  El  +l++
  KKY15812.1 108 KLRFAFKVYDIDRDGYISNGELFIVLKM 135
                 5899**********************96 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 4.9e-05
   EF-hand_6  10 DkdgdGkidaeElrkal 26 
                 D dgdGki++eE+ ++ 
  KKY15812.1 158 DMDGDGKISFEEFTRMV 174
                 88***********8876 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1     1e-07   0.00018       1      23 [.      40      62 ..      40      64 .. 0.89
   2 !    5.2   0.3    0.0088        16       7      21 ..      78      92 ..      74      97 .. 0.88
   3 !   14.4   0.0   1.1e-05     0.019       4      21 ..     112     129 ..     109     136 .. 0.89
   4 !   29.4   0.3     2e-10   3.6e-07       2      25 .]     151     174 ..     149     174 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1e-07
                HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELkt 23
                l++ F ++D++++G+I ++E+  
  KKY15812.1 40 LRKRFMKLDKDNSGTIERDEFLS 62
                5777*****************75 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0088
                HH-SS-SSCE-HHHH CS
   EF-hand_5  7 aiDlNgDGkIskeEL 21
                 +D +g G ++++E+
  KKY15812.1 78 IFDEDGGGDVDFQEF 92
                59************9 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 1.1e-05
                 HHHHH-SS-SSCE-HHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeEL 21 
                 +F+  D ++DG+Is  EL
  KKY15812.1 112 AFKVYDIDRDGYISNGEL 129
                 4*************9887 PP

  == domain 4  score: 29.4 bits;  conditional E-value: 2e-10
                 HHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktlv 25 
                 ++t  ++D++gDGkIs+eE+ ++v
  KKY15812.1 151 DKTIMEADMDGDGKISFEEFTRMV 174
                 349999**************9986 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.44   7.9e+02      22      40 ..      17      35 ..       7      37 .. 0.78
   2 !   11.0   0.0   0.00017       0.3      32      51 ..      44      63 ..      44      65 .. 0.92
   3 !    7.9   0.6    0.0015       2.7      31      50 ..      75      94 ..      72      97 .. 0.90
   4 !   21.2   0.7     1e-07   0.00018       2      47 ..      84     128 ..      83     135 .. 0.85
   5 !   23.4   0.8   2.1e-08   3.8e-05      32      54 ..     154     176 ..     132     177 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.44
   EF-hand_8 22 glseeevdilfrefDtdgd 40
                g + e +d +++   +d+d
  KKY15812.1 17 GGGSEVIDNIVSGSNFDRD 35
                4788899999999999998 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00017
   EF-hand_8 32 frefDtdgdGkisfeEFcvl 51
                f+++D d++G+i  +EF+ l
  KKY15812.1 44 FMKLDKDNSGTIERDEFLSL 63
                789**************975 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0015
   EF-hand_8 31 lfrefDtdgdGkisfeEFcv 50
                ++  fD+dg G ++f EF+ 
  KKY15812.1 75 MIAIFDEDGGGDVDFQEFVS 94
                7889**************86 PP

  == domain 4  score: 21.2 bits;  conditional E-value: 1e-07
   EF-hand_8   2 kgkItreelrrilrilglkk...glseee.vdilfrefDtdgdGkisfeE 47 
                 +g ++++e+++     gl     + ++ee ++  f+  D+d+dG+is  E
  KKY15812.1  84 GGDVDFQEFVS-----GLSAfssKGNKEEkLRFAFKVYDIDRDGYISNGE 128
                 799********.....77778886888888****************9666 PP

  == domain 5  score: 23.4 bits;  conditional E-value: 2.1e-08
   EF-hand_8  32 frefDtdgdGkisfeEFcvller 54 
                 ++e+D+dgdGkisfeEF  ++e+
  KKY15812.1 154 IMEADMDGDGKISFEEFTRMVEN 176
                 789**************999885 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0016       2.9      54     111 ..      38      93 ..      24      95 .. 0.90
   2 !   17.3   0.0   2.4e-06    0.0043      53     111 ..     106     171 ..      98     173 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0016
  SPARC_Ca_bdg  54 epvawkFsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkEwc 111
                   + ++ +F klD+++ +++++ E  +l +  v+ +   ++++   D d  ++++ +E++
    KKY15812.1  38 DRLRKRFMKLDKDNSGTIERDEFLSLPQ--VSSNPLATRMIAIFDEDGGGDVDFQEFV 93 
                   566778*****************99999..999***********************97 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 2.4e-06
  SPARC_Ca_bdg  53 kepvawkFsklDtnsdkvlsksELaplrapl.......vklehCikpflescDadkdkkislkEwc 111
                   +e++++ F+  D ++d+++s+ EL  + + +       ++l++ +++ ++++D+d d+kis +E++
    KKY15812.1 106 EEKLRFAFKVYDIDRDGYISNGELFIVLKMMvgsnlkdMQLQQIVDKTIMEADMDGDGKISFEEFT 171
                   67899*******************977654423333335788999*******************97 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.28     5e+02      35      66 ..      27      61 ..      19      67 .. 0.66
   2 ?    4.0   0.9     0.026        46      47      66 ..      74      93 ..      30     100 .. 0.70
   3 !    7.2   0.0    0.0026       4.7      41      72 ..     105     136 ..      95     139 .. 0.86
   4 !   15.5   0.2   6.8e-06     0.012      34      66 ..     135     171 ..     132     179 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.28
   EF-hand_4 35 lknsklee...dklekiwdladidedgkldfeefc 66
                +  s+++    d+l k +   d d+ g+++ +ef 
  KKY15812.1 27 VSGSNFDRdevDRLRKRFMKLDKDNSGTIERDEFL 61
                55555555011455566667788999999999995 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.026
   EF-hand_4 47 kiwdladidedgkldfeefc 66
                ++  + d d  g++df+ef+
  KKY15812.1 74 RMIAIFDEDGGGDVDFQEFV 93
                5666778889999*****98 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0026
   EF-hand_4  41 eedklekiwdladidedgkldfeefciamrli 72 
                 +e+kl   +++ did dg +   e+ i+++++
  KKY15812.1 105 KEEKLRFAFKVYDIDRDGYISNGELFIVLKMM 136
                 67899999****************99999986 PP

  == domain 4  score: 15.5 bits;  conditional E-value: 6.8e-06
   EF-hand_4  34 vlknskleedklekiwdl....adidedgkldfeefc 66 
                 ++  s+l++ +l++i d     ad+d dgk+ feef+
  KKY15812.1 135 MMVGSNLKDMQLQQIVDKtimeADMDGDGKISFEEFT 171
                 56679999999999887433348*************7 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.8   6.5e-05      0.12       2      46 ..     116     166 ..     115     177 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.5e-05
                 TETTSSSC-SHHHHHHHHHHCT......SSEBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1   2 gDVNgDgkVnalDalliinyln......qregqssssngkaaDvNgDGrvn 46 
                  D+++Dg ++   + ++ + +        + +q  ++    aD++gDG+++
  KKY15812.1 116 YDIDRDGYISNGELFIVLKMMVgsnlkdMQLQQIVDKTIMEADMDGDGKIS 166
                 59999********999999999999999788999999*************8 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.3   2.4e+03      41      59 ..      44      61 ..      29      63 .. 0.70
   2 ?    0.7   0.0      0.37   6.6e+02       6      37 ..      78     109 ..      74     111 .. 0.81
   3 ?   10.1   0.1   0.00045       0.8       3      63 ..     112     175 ..     110     177 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.3
   EF-hand_9 41 akelDPdgedasvdldtfl 59
                  +lD d+  ++++ d fl
  KKY15812.1 44 FMKLDKDNS-GTIERDEFL 61
                456777777.888888886 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.37
   EF-hand_9   6 vcDtqktGrVpvsrlidyLravtaqdpeeseL 37 
                 ++D +  G V  ++ ++ L a  ++  +e +L
  KKY15812.1  78 IFDEDGGGDVDFQEFVSGLSAFSSKGNKEEKL 109
                 79999999999999999998888887777766 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00045
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeela....kelDPdgedasvdldtflrvmr 63 
                  F+v+D+++ G +   +l  +L+ + + + ++++L++       e+D dg  +++ ++ f r++ 
  KKY15812.1 112 AFKVYDIDRDGYISNGELFIVLKMMVGSNLKDMQLQQIVdktiMEADMDGD-GKISFEEFTRMVE 175
                 59**********************999999999888765111157898888.9999999999875 PP

>> Anthrax-tox_M  Anthrax toxin lethal factor, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.25   4.5e+02      66     107 ..      32      73 ..      20      80 .. 0.67
   2 ?   10.8   0.0   0.00013      0.23     233     282 ..     106     157 ..      99     161 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.25
                    SS-HHHHHHHHH.HHHHHHTTSSHHHHHHHHHCSTTTTSS-TH CS
  Anthrax-tox_M  66 flsteekeflkk.lqidirdslseeekellnriqvdssnplse 107
                    f   e   + k+ +++d  +s + e  e+l   qv ssnpl+ 
     KKY15812.1  32 FDRDEVDRLRKRfMKLDKDNSGTIERDEFLSLPQV-SSNPLAT 73 
                    44444333333335678888888899999998888.7899876 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00013
                    TEEEEEEEE--TT-BEEEETTTEE..EE-SSEEEEEEEEEEEEETTEEEEEE CS
  Anthrax-tox_M 233 nerlkwriqlspdtragylengkl..ilqrnigleikdvqiikqsekeyiri 282
                    +e+l++  ++    r gy+ ng l  +l+  +g ++kd+q+ +  +k  +  
     KKY15812.1 106 EEKLRFAFKVYDIDRDGYISNGELfiVLKMMVGSNLKDMQLQQIVDKTIMEA 157
                    68999999999999********974468899*********988888876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1420.51
//
Query:       KKY15867.1  [L=562]
Description: putative spindle pole body associated protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-05   24.1   9.1      2e-05   24.1   9.1    3.4  4  FAM76           FAM76 protein
    0.00012   22.3   7.2    0.00012   22.3   7.2    3.3  3  Fib_alpha       Fibrinogen alpha/beta chain family
    0.00025   21.0   5.9    0.00025   21.0   5.9    5.5  5  TMF_DNA_bd      TATA element modulatory factor 1 DNA binding
     0.0037   16.8   0.7     0.0093   15.4   0.3    1.8  1  Zn_peptidase    Putative neutral zinc metallopeptidase
  ------ inclusion threshold ------
       0.11   13.1  34.7       0.09   13.4   1.9    4.9  4  SlyX            SlyX
       0.71    8.7  49.2       0.59    9.0  19.3    2.9  2  Spc7            Spc7 kinetochore protein
        1.2    8.3  45.5        1.9    7.6   7.8    2.4  2  HAP1_N          HAP1 N-terminal conserved region
        1.3    9.4  40.1       0.13   12.7   3.8    4.4  4  DUF641          Plant protein of unknown function (DUF641)
        5.8    7.0  50.3        1.2    9.2  15.5    3.5  3  UPF0242         Uncharacterised protein family (UPF0242) N-te
        7.6    6.9  31.6        2.5    8.5   9.9    4.8  4  BLOC1_2         Biogenesis of lysosome-related organelles com


Domain annotation for each model (and alignments):
>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   9.1   1.1e-08     2e-05     138     296 ..     152     349 ..     139     353 .. 0.60
   2 ?    3.4   4.2     0.023        41     227     288 ..     330     391 ..     325     405 .. 0.76
   3 ?    2.0  16.6      0.06   1.1e+02     205     296 ..     397     487 ..     354     491 .. 0.60
   4 ?   -0.3   8.0      0.31   5.6e+02     242     294 ..     479     531 ..     477     540 .. 0.52

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.1e-08
       FAM76 138 akeeeeekrskskkkkskskkskkskekskekkaskkkskkh...kkrss........................................rlevsklee 193
                 +k   +  +++ ++++ ++++++++k++ + + ++++++++h   +                                            +        
  KKY15867.1 152 EKAAAAAAKKAADTAAAQNTTNPERKHSLQPTVSDESENRQHeisH---FidgifggpllerdytaplptsaddtvplpqppehvtngrtN-------- 239
                 2333333333333444444444444445555556666666663440...244555555555444555555555555666654433222112........ PP

       FAM76 194 ek.........laeekesnetskk...sldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkitelkaellekekelreklkelekeakekiek 280
                  +         + +++++     k    ++++s   l +++ +++++a+++ +l+++d+++ ++d +i +l+ +l++  + ++e  + +  + +++++ 
  KKY15867.1 240 -GktgqaqahaQIQSQPR--V--KtpsPVHLESDSMLAQMEAMQKQLAEMQERLAERDTQIAQRDNEIKSLRIQLTQRTTAMNELEEWCADNDEAQVQD 333
                 .12233322112222222..2..1343566666667778***********************************99999999998889999999***** PP

       FAM76 281 lekkirellkevaels 296
                 l++ki++    +++l+
  KKY15867.1 334 LKRKITQKDSTITHLQ 349
                 ****998776666665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.023
       FAM76 227 eiaslkkqleqkdqellekdkkitelkaellekekelreklkelekeakekieklekkirel 288
                 +++ lk++++qkd+++ + ++++     e    ++++  +  ++++  + ++++l k+++ +
  KKY15867.1 330 QVQDLKRKITQKDSTITHLQQTLEGHNKEIDGLRHDVSVRDDAIKALQDLNQKRLAKHNSVI 391
                 79999999999999999999999988888888888877777777777777777776666544 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.06
       FAM76 205 tskksldsnssdhlvavtqLkeeiaslkkqleqkdqellekd....kkitelkaelleke...kelreklkelekeakekieklekkirellkevaels 296
                 + k++ld+ s+ h +a+        + ++ +++k+++ll ++    + +te+ a+ +e e   k+lr++l++++++ ++++ekl+++ ++l  ++++++
  KKY15867.1 397 KFKAALDMISNRHRLAI--------EAQQAVHKKETNLLRQElsntQSVTEIEAQRVEYEketKSLRQQLSHIQSTWSHQTEKLNTQAQKLVAQKSTIK 487
                 22224444444444444........4555556666655544322226677777766655511167899***************************9987 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.31
       FAM76 242 llekdkkitelkaellekekelreklkelekeakekieklekkirellkevae 294
                 l++++ +i +l++  +++e+  +e   ++ + + ++ e+ ekk++el+ke+ +
  KKY15867.1 479 LVAQKSTIKSLQSRIQTMESASKELDIQISQRIAKREEHWEKKMKELQKEKEK 531
                 44555555555555555555555555555555555555555555555555443 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   7.2   6.8e-08   0.00012      24     128 ..     268     369 ..     260     375 .. 0.90
   2 ?    0.9  10.3      0.26   4.6e+02      25     119 ..     383     473 ..     380     478 .. 0.78
   3 ?    2.0  17.0      0.12   2.2e+02      32     131 ..     419     513 ..     413     524 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 6.8e-08
                 HCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  24 dlllkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLe 122
                 d +l + + ++k+l++++++l+e   +  + ++ +k+++ +l+++ +  ++ ++     +++ e ++++lk++i+++ s+i  Lq++le  +++i  L+
  KKY15867.1 268 DSMLAQMEAMQKQLAEMQERLAERDTQIAQRDNEIKSLRIQLTQRTTAMNELEEWC---ADNDEAQVQDLKRKITQKDSTITHLQQTLEGHNKEIDGLR 363
                 78999****************************************99999755554...455566899******************************* PP

                 HHHHHH CS
   Fib_alpha 123 qdidqk 128
                  d++ +
  KKY15867.1 364 HDVSVR 369
                 *99876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.26
                 CCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  25 lllkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiq 119
                  l k+++ +k + ek +  l+ isn+++ a e  ++++++ ++  +++       ++s +e+e + ++++++ ++  +++  +q++ +++ +k++
  KKY15867.1 383 RLAKHNSVIKAKDEKFKAALDMISNRHRLAIEAQQAVHKKETNLLRQEL----SNTQSVTEIEAQRVEYEKETKSLRQQLSHIQSTWSHQTEKLN 473
                 5778888888888999999999999999888887777777666666655....345666778889999999999999999999999999998876 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.12
                 CCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  32 dvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqker 130
                   kk+ + l++el++ ++ t+   + v++ k++   +q+ ++  +++ ++ +++l+    +  ++++aq s+i+ Lq+ +++ e+  ++L  +i+q+++
  KKY15867.1 419 VHKKETNLLRQELSNTQSVTEIEAQRVEYEKETKSLRQQLSH-IQSTWSHQTEKLN----TQAQKLVAQKSTIKSLQSRIQTMESASKELDIQISQRIA 512
                 445566667777777776666666666665555555554444.3555555555555....7778888999*********************99999987 PP

                 H CS
   Fib_alpha 131 k 131
                 k
  KKY15867.1 513 K 513
                 6 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.4         1   1.8e+03      37      59 ..     143     165 ..     141     177 .. 0.83
   2 !   21.0   5.9   1.4e-07   0.00025       2      73 ..     283     355 ..     282     356 .. 0.96
   3 ?   -2.8   4.2       3.8   6.8e+03      11      37 ..     370     393 ..     355     435 .. 0.51
   4 ?    0.5   6.5      0.35   6.3e+02      22      70 ..     424     472 ..     417     475 .. 0.81
   5 ?   -1.1  13.6       1.1   1.9e+03      27      68 ..     478     527 ..     470     532 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1
  TMF_DNA_bd  37 kLrkknkelekeikelkkklekl 59 
                  L +k++e ek  +   kk ++ 
  KKY15867.1 143 PLAAKAAEEEKAAAAAAKKAADT 165
                 58899999999999998888765 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 1.4e-07
  TMF_DNA_bd   2 slekklkeKDeqIaqLmeEGekLskkelklnntikkLrkknkele.keikelkkkleklekeleeleerlkea 73 
                 ++++ l+e+D qIaq   E + L+ +  +  +++ +L +  ++++  ++++lk+k+ ++++ ++ l++ l+++
  KKY15867.1 283 EMQERLAERDTQIAQRDNEIKSLRIQLTQRTTAMNELEEWCADNDeAQVQDLKRKITQKDSTITHLQQTLEGH 355
                 6899************************************9999769**********************9987 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 3.8
  TMF_DNA_bd  11 DeqIaqLmeEGekLskkel.klnntikk 37 
                 D+ I++L+    +L  k l k+n  ik 
  KKY15867.1 370 DDAIKALQ----DLNQKRLaKHNSVIKA 393
                 44444443....3333322033333333 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.35
  TMF_DNA_bd  22 ekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerl 70 
                 ++L  +el + +++ +  ++  e eke k+l ++l+  ++  + ++e+l
  KKY15867.1 424 TNLLRQELSNTQSVTEIEAQRVEYEKETKSLRQQLSHIQSTWSHQTEKL 472
                 6899999999999999999999999999999999988777777666666 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 1.1
  TMF_DNA_bd  27 kelklnntikkLrkknkelekeikelk........kkleklekeleelee 68 
                 k ++++ tik+L++ ++ +e+  kel+        k+ e  ek+++el++
  KKY15867.1 478 KLVAQKSTIKSLQSRIQTMESASKELDiqisqriaKREEHWEKKMKELQK 527
                 66789*********************977884433333334444444444 PP

>> Zn_peptidase  Putative neutral zinc metallopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   5.2e-06    0.0093      70     138 ..     487     555 ..     461     558 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.2e-06
  Zn_peptidase  70 aaaqssegtaeeaedeqkefvsvvladtedtWtqifkekgktyqkpklvlfsrvvrsaCGtassatGPf 138
                   ++ qs  +t e+a++e    +s+ +a+ e+ W++ +ke +k+ +k   vl ++  r  CG++++   P+
    KKY15867.1 487 KSLQSRIQTMESASKELDIQISQRIAKREEHWEKKMKELQKEKEKMGRVLMREWGRQECGQGEGGIQPY 555
                   2334444555557788777788889*************************************9988886 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   3.8     0.017        30      32      56 ..     273     297 ..     267     304 .. 0.81
   2 ?   13.4   1.9     5e-05      0.09       2      55 ..     328     381 ..     327     389 .. 0.91
   3 ?    0.6   0.3      0.48   8.6e+02      25      50 ..     436     461 ..     403     464 .. 0.69
   4 ?   10.5   5.6   0.00041      0.74       2      55 ..     455     508 ..     454     519 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHHHT-XXXXXXXXX CS
        SlyX  32 qidrlqrqlrllaerlkeleessga 56 
                 q++++q+ql++++erl+e++++ ++
  KKY15867.1 273 QMEAMQKQLAEMQERLAERDTQIAQ 297
                 8999************998888553 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 5e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX   2 eerleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessg 55 
                 e+++++L  k++  + ti  L++++  ++++id l++ +    + +k+l++ ++
  KKY15867.1 328 EAQVQDLKRKITQKDSTITHLQQTLEGHNKEIDGLRHDVSVRDDAIKALQDLNQ 381
                 6789999**********************************9999999998776 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.48
                 HHHHHHHHHHHHHHHHHHHHHT-XXX CS
        SlyX  25 vvaeqqqqidrlqrqlrllaerlkel 50 
                  v+e + q  + +++ + l+++l+++
  KKY15867.1 436 SVTEIEAQRVEYEKETKSLRQQLSHI 461
                 35555555555555555555555554 PP

  == domain 4  score: 10.5 bits;  conditional E-value: 0.00041
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX   2 eerleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessg 55 
                  ++l ++++  ++q + +++  + +++q  +i+ lq +++ ++   kel+ + +
  KKY15867.1 455 RQQLSHIQSTWSHQTEKLNTQAQKLVAQKSTIKSLQSRIQTMESASKELDIQIS 508
                 578999*************************************99999887654 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  19.3   0.00033      0.59     144     286 ..     274     413 ..     267     421 .. 0.77
   2 ?    2.0  25.0     0.043        78     152     258 ..     420     530 ..     396     540 .. 0.43

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00033
        Spc7 144 leenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeq 242
                 +e   ++l e +e+L+++  ++ +  +e+++ + +l+++ + ++e +e +++ d+++++ l++++++ +++i ++++ l+  +++++ l+ +++  ++ 
  KKY15867.1 274 MEAMQKQLAEMQERLAERDTQIAQRDNEIKSLRIQLTQRTTAMNELEEWCADNDEAQVQDLKRKITQKDSTITHLQQTLEGHNKEIDGLRHDVSVRDDA 372
                 44444555566678888888888888888888889999999999999999999999999***9999999999999999999999999999999888777 PP

        Spc7 243 kseleeeiaeaervleeckgwsesevsrlkeevkaleeltgwki 286
                 ++ l++  +  +r+ + +  +++++ ++ k+ ++++ + + ++i
  KKY15867.1 373 IKALQDLNQ--KRLAKHNSVIKAKD-EKFKAALDMISNRHRLAI 413
                 777765433..66666666666666.777777888777777665 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.043
        Spc7 152 eedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles...idkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkse.l 246
                  + +++L +qe   ++ + e+e+++ e e+e ++l+++   ++s    + e+L++  ++l+++k++i++++ +++++++  +el+ +i++  ++++e +
  KKY15867.1 420 HKKETNLLRQELSNTQSVTEIEAQRVEYEKETKSLRQQLSHIQStwsHQTEKLNTQAQKLVAQKSTIKSLQSRIQTMESASKELDIQISQRIAKREEhW 518
                 222233333333333333344444444444444444433333333323344444444444444444444444444444444444444444333333213 PP

        Spc7 247 eeeiaeaervle 258
                 e++++e ++ +e
  KKY15867.1 519 EKKMKELQKEKE 530
                 344444444333 PP

>> HAP1_N  HAP1 N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   7.8    0.0011       1.9     208     264 ..     271     330 ..     267     342 .. 0.78
   2 ?    5.1  31.2    0.0064        11     101     292 ..     344     533 ..     332     544 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0011
      HAP1_N 208 veqlseanqqiaelseelarkleelerqqeeissLlaqivdlqqklkel...gveneelk 264
                  +q++  ++q+ae++e la++  ++++  +ei+sL+ q+++  + ++el    ++n+e +
  KKY15867.1 271 LAQMEAMQKQLAEMQERLAERDTQIAQRDNEIKSLRIQLTQRTTAMNELeewCADNDEAQ 330
                 5799999*******************************9987766655411144666655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0064
      HAP1_N 101 rnekLeeqLesareeiaqlrhelslkddLLqlysdseeeseeeseeseelreeesl......eslqklvqldlLqeklreLeeeNekLreeasqLktet 193
                 +  +L++ Le  + ei  lrh++s +dd ++ + d +++   ++++  +  ++e++       s+++ + +++  + +   ++e + Lr+e s+     
  KKY15867.1 344 TITHLQQTLEGHNKEIDGLRHDVSVRDDAIKALQDLNQKRLAKHNSVIK-AKDEKFkaaldmISNRHRLAIEAQ-QAV--HKKETNLLRQELSNT---- 434
                 567899**************************99985444333333322.222222222222334444444432.222..345566677776554.... PP

      HAP1_N 194 dtlEekEqqLvldcveqlseanqqiaelseelarkleelerqqeeissLlaqivdlqqklkelgveneelkqhLaas.keaqrqLtaELqdlqekyaev 291
                 +++ e E+q v +  ++ ++ +qq+++++   ++++e+l++q ++ +  ++ i +lq +++++ + ++el  +++      +++ ++ +++lq+  + +
  KKY15867.1 435 QSVTEIEAQRV-EYEKETKSLRQQLSHIQSTWSHQTEKLNTQAQKLVAQKSTIKSLQSRIQTMESASKELDIQISQRiAKREEHWEKKMKELQKEKEKM 532
                 66666666665.567778888888888888888888888888888888888888888888888888888877765331222334555566666555554 PP

      HAP1_N 292 e 292
                  
  KKY15867.1 533 G 533
                 4 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   3.8     7e-05      0.13      71     127 ..     265     321 ..     244     322 .. 0.85
   2 ?   10.1   0.3   0.00044      0.78      91     121 ..     328     358 ..     323     365 .. 0.81
   3 ?   -2.5   6.8       3.3     6e+03      57     120 ..     409     463 ..     374     474 .. 0.50
   4 ?    3.1  11.2     0.062   1.1e+02      51     125 ..     456     532 ..     451     534 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7e-05
      DUF641  71 aeeseleaeiqeqrsllktyeitvkkleaelkakdseieeLkekLeeaeksnkklek 127
                  e+ ++ a+++  ++ l+ ++ ++ + ++++ ++d+ei++L+ +L++ + + ++le+
  KKY15867.1 265 LESDSMLAQMEAMQKQLAEMQERLAERDTQIAQRDNEIKSLRIQLTQRTTAMNELEE 321
                 5667889999999999999****************************9999999986 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00044
      DUF641  91 eitvkkleaelkakdseieeLkekLeeaeks 121
                 e+ v++l++++++kds i++L+++Le  +k+
  KKY15867.1 328 EAQVQDLKRKITQKDSTITHLQQTLEGHNKE 358
                 7889999999999999999999999877765 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.3
      DUF641  57 krlyrkkqkkkaseaeeseleaeiqeqrsllktyeitvkkleaelkakdseieeLkekLeeaek 120
                  rl ++ q++ ++ +e++        +r+ l   +  v ++ea+  + ++e ++L+++L+++++
  KKY15867.1 409 HRLAIEAQQAVHK-KETNL-------LRQELSNTQ-SVTEIEAQRVEYEKETKSLRQQLSHIQS 463
                 3333333222211.22222.......333332222.2345555555555666666666666555 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.062
      DUF641  51 kklselkrlyrkkqkkkase.aeeseleaeiqeqrsllktyeitvkkleaelkakdseiee.LkekLeeaeksnkkl 125
                 ++ls++++ + ++ +k +++ ++  + ++ i+ ++s ++t+e ++k+l+ +++++ ++ ee  ++k++e++k+++k+
  KKY15867.1 456 QQLSHIQSTWSHQTEKLNTQaQKLVAQKSTIKSLQSRIQTMESASKELDIQISQRIAKREEhWEKKMKELQKEKEKM 532
                 468888888887766655532555566778999*********************98887651567899999999887 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2  15.5   0.00067       1.2      86     175 ..     269     362 ..     231     380 .. 0.65
   2 ?    5.7  22.1    0.0078        14      65     177 ..     379     498 ..     373     509 .. 0.72
   3 ?   -1.7   1.0       1.4   2.6e+03     102     116 ..     515     529 ..     497     538 .. 0.45

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00067
     UPF0242  86 tkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiae..........dfee.lkleleeqLaekqellqeyqetieeqrsvlekrqdqie 173
                     ++e +q++  e++e+l++++++++++ +e ++L+++l +             d++e + ++l+ ++ +k   + ++q+t+e         +++i 
  KKY15867.1 269 SMLAQMEAMQKQLAEMQERLAERDTQIAQRDNEIKSLRIQLTQRTTamneleewcaDNDEaQVQDLKRKITQKDSTITHLQQTLEGH-------NKEID 360
                 33348999********************************99977767766666663333134555555555555555555555544.......44444 PP

     UPF0242 174 qL 175
                  L
  KKY15867.1 361 GL 362
                 44 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0078
     UPF0242  65 lekskleekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqL.......aekqellqeyqe 156
                 l+++ l++ +++++++de++k   + + ++     e ++ + +ke++l r +  n q   + ea   ++e+  + l +qL        +++e+l++ ++
  KKY15867.1 379 LNQKRLAKHNSVIKAKDEKFKAALDMISNRHRLAIEAQQAVHKKETNLLRQELSNTQSVTEIEAQRVEYEKETKSLRQQLshiqstwSHQTEKLNTQAQ 477
                 46778899999*************************************999999986555666655555555555555551111111567777777777 PP

     UPF0242 157 tieeqrsvlekrqdqieqLes 177
                 +++ q+s++++ q +i+ +es
  KKY15867.1 478 KLVAQKSTIKSLQSRIQTMES 498
                 777777777777777777766 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.4
     UPF0242 102 keeldakeeelerlk 116
                 +e+ ++k +el++ k
  KKY15867.1 515 EEHWEKKMKELQKEK 529
                 222222222222222 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   3.3    0.0035       6.2      36      89 ..     271     324 ..     263     328 .. 0.90
   2 ?    2.1   0.6      0.13   2.3e+02      36      69 ..     331     361 ..     325     385 .. 0.47
   3 ?   -1.6   0.1       1.9   3.3e+03      44      68 ..     382     406 ..     374     419 .. 0.79
   4 ?    8.5   9.9    0.0014       2.5      30      88 ..     449     507 ..     403     515 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0035
     BLOC1_2  36 ykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLDeysk 89 
                  ++++ + ++l++  e+l e++ ++++  ++i+ +  q+t+ ++a +eL+e++ 
  KKY15867.1 271 LAQMEAMQKQLAEMQERLAERDTQIAQRDNEIKSLRIQLTQRTTAMNELEEWCA 324
                 57899999999999999999999****************************996 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.13
     BLOC1_2  36 ykklkdvaaslekkleklnekyeelqpylqqidq 69 
                 +++lk+++ +  +++ +l++   +l+ + ++id 
  KKY15867.1 331 VQDLKRKITQKDSTITHLQQ---TLEGHNKEIDG 361
                 33333333333333333333...44444444444 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.9
     BLOC1_2  44 aslekkleklnekyeelqpylqqid 68 
                 + l+k  + +++k+e+++  l+ i 
  KKY15867.1 382 KRLAKHNSVIKAKDEKFKAALDMIS 406
                 4567777788888888888888775 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0014
     BLOC1_2  30 eaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLDeys 88 
                 +++ +  ++l+++ +  + + ekln + ++l  +++ i+ ++ +++++e+a +eLD  +
  KKY15867.1 449 KETKSLRQQLSHIQSTWSHQTEKLNTQAQKLVAQKSTIKSLQSRIQTMESASKELDIQI 507
                 334444467777778888999**********************************9554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3104  (0.173127); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                       133  (0.00741815); expected 17.9 (0.001)
Passed Fwd filter:                        81  (0.00451782); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.67u 0.42s 00:00:02.09 Elapsed: 00:00:00.64
# Mc/sec: 2631.67
//
Query:       KKY15868.1  [L=361]
Description: putative dna repair protein rad14 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-25   88.2   3.0    5.3e-25   87.1   3.0    1.6  1  XPA_C      XPA protein C-terminus
    9.9e-07   28.7   4.2    9.9e-07   28.7   4.2    1.7  2  XPA_N      XPA protein N-terminal
  ------ inclusion threshold ------
      0.097   13.3   2.4       0.11   13.2   0.3    2.1  2  Anillin_N  Anillin N-terminus
        0.2   11.8   3.9        2.1    8.6   0.3    3.2  3  zf-RING_7  C4-type zinc ribbon domain


Domain annotation for each model (and alignments):
>> XPA_C  XPA protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   3.0   1.2e-28   5.3e-25       1      51 []     203     253 ..     203     253 .. 0.99

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 1.2e-28
       XPA_C   1 kysLiTkTeakedYLLtdedLkdrelLkflkkkNPhnstwgdMkLYlklqV 51 
                 kysL+TkTea+edYLLtd++L+d++lL++l+++NPh+st+++M+LYl++qV
  KKY15868.1 203 KYSLLTKTEAREDYLLTDPELRDEDLLPHLERPNPHKSTYHNMMLYLRYQV 253
                 8**********************99*************************9 PP

>> XPA_N  XPA protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   4.2   2.2e-10   9.9e-07       2      32 .]     170     200 ..     169     200 .. 0.97
   2 ?   -3.1   0.4       1.9   8.7e+03       3      10 ..     348     355 ..     347     357 .. 0.76

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 2.2e-10
       XPA_N   2 pkCdeCgkefldSyLldnFdysVCDkCRDke 32 
                 pkC eCg+ + d +  + F+++VC++C++k+
  KKY15868.1 170 PKCRECGSLEIDWKWAEVFHCNVCNTCKEKY 200
                 8****************************97 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.9
       XPA_N   3 kCdeCgke 10 
                 kC  Cg e
  KKY15868.1 348 KCSGCGME 355
                 89999865 PP

>> Anillin_N  Anillin N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.77   3.5e+03      31      31 ..      34      34 ..       5      73 .. 0.45
   2 ?   13.2   0.3   2.4e-05      0.11      13      77 ..     261     327 ..     257     332 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.77
   Anillin_N 31 s 31
                +
  KKY15868.1 34 Q 34
                1 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.4e-05
   Anillin_N  13 krwdkddasddvpesslvsplkseaeaasppkp...stssetpvgRrgrlAnLaatigswedDlshss 77 
                 ++w + ++ d++ e   v++ k++++ +++ k    ++++ ++  Rr rlA  a + g++ dDl  ++
  KKY15868.1 261 RKWGSAESLDQEFERREVEKKKRKEA-KFKSKLnelKKKTRVEAYRRSRLAGEAGAGGTFGDDLRREK 327
                 67888454555555555555555554.455554559999999*********************98765 PP

>> zf-RING_7  C4-type zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1         2   8.7e+03       7      19 ..       1      13 [.       1      16 [. 0.64
   2 ?    3.1   0.0     0.024   1.1e+02      11      31 ..     158     177 ..     153     178 .. 0.69
   3 ?    8.6   0.3   0.00047       2.1       1       9 [.     348     356 ..     348     360 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2
                -B--CCHHHHHCC CS
   zf-RING_7  7 melppqvlselra 19
                me++    ++lr 
  KKY15868.1  1 MEINRLKAKALRE 13
                6677777777765 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.024
                 CCHHHHHCCSTB-EE-TTT-- CS
   zf-RING_7  11 pqvlselragdevvtCpeCGR 31 
                  q++ +   + + ++C eCG 
  KKY15868.1 158 VQDFEDAEDK-QTPKCRECGS 177
                 5555555555.78******96 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00047
                 EETTT--B- CS
   zf-RING_7   1 tCgGChmel 9  
                 +C+GC+me+
  KKY15868.1 348 KCSGCGMEI 356
                 7*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1236  (0.0689386); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.53
# Mc/sec: 2051.73
//
Query:       KKY15869.1  [L=366]
Description: hypothetical protein UCRPC4_g06055 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1085  (0.0605165); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.81u 0.36s 00:00:01.17 Elapsed: 00:00:00.50
# Mc/sec: 2195.13
//
Query:       KKY15870.1  [L=1193]
Description: putative glycogen synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
          0 1152.6   0.0          0 1152.2   0.0    1.1  1  Glycogen_syn     Glycogen synthase
    3.4e-27   94.4   1.3      1e-26   92.9   1.3    1.8  1  SGS              SGS domain
    1.4e-11   45.2   0.1    4.6e-11   43.6   0.0    2.0  2  CS               CS domain
    4.8e-05   23.0   0.0      0.023   14.2   0.0    2.4  2  Glycos_transf_1  Glycosyl transferases group 1
    6.1e-05   23.1   0.1    0.00015   21.8   0.1    1.7  1  Glyco_transf_4   Glycosyltransferase Family 4
    0.00045   20.7   0.0        0.4   11.1   0.0    2.4  2  Glyco_trans_1_4  Glycosyl transferases group 1
    0.00078   19.9   0.1     0.0031   18.0   0.0    2.1  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain


Domain annotation for each model (and alignments):
>> Glycogen_syn  Glycogen synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1152.2   0.0         0         0       1     634 [.      20     660 ..      20     664 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1152.2 bits;  conditional E-value: 0
                   EEETTTTS-SSCHHHHHHHHHHHHHHHHGGGEEEEEE--TTGGGGTEEE----SHHHHHHHHHHGGGT--EEEEEESSTT--EEEEE-GGGGSTTHH CS
  Glycogen_syn   1 evawevankvGGiytvlkskakvtteelGdnytllGplkeqkarteveeleaenealkkalkslrekGvkvlyGrwlieGapkvilfdldsaavkld 97 
                   eva+evan+vGGiy+vlkska+vtt+e+G++ytl+Gpl++++a++eveele+ n++l+++++s+re+G+ +lyGrwlieGap+v+l+d+++++  ld
    KKY15870.1  20 EVATEVANRVGGIYSVLKSKAPVTTAEYGERYTLIGPLNRASAAVEVEELEPANPKLRETIESMRERGIALLYGRWLIEGAPRVLLIDTGTGYRWLD 116
                   8************************************************************************************************ PP

                   HHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHHHHHCT----EEEEEEETGGGHHHHHHHHHTT-SEEEEEEESS-HHHHHHHHTT---TTSTT CS
  Glycogen_syn  98 ewkaelwekvkigipeedretndaiilGflvalflkefreleekkavvahfhewlaGvgliltrkrkldvatvftthatllGrylcagavdfynnld 194
                   ewk++lw++++i++pe d+etn+ai++G+lva+fl+ef + e+ +avvahfhewlaGv+++lt+kr++d++t+ftthatllGrylcag+vdfynnl+
    KKY15870.1 117 EWKGDLWNTAGIPSPEGDHETNEAIVFGYLVAWFLGEFIARETDRAVVAHFHEWLAGVAIPLTKKRHMDLTTIFTTHATLLGRYLCAGSVDFYNNLQ 213
                   ************************************************************************************************* PP

                   S--HHHHHHHTT-HHHHHHHHHHHHHSSEEEESSHHHHHHHHHHSS---SEE----B-GGGT--TTTHHHHHHHHHHHHHHHHHHHTTT---S-GGG CS
  Glycogen_syn 195 kfdvdkeaGkrqiyhrycleraaahtadvfttvseitaleaehllkrkpdvvlpnGlnvkkfsalhefqnlhalkkekindfvrGhfyGhldfdldk 291
                   +fdvd+eaGkr+iyhryc+era+ah++dvfttvs+ita+e+ehllkrkpd+vlpnGlnvkkfsa+hefqnlh+++keki+dfvrGhfyGh +f+ ++
    KKY15870.1 214 YFDVDAEAGKRGIYHRYCIERASAHSCDVFTTVSHITAYESEHLLKRKPDGVLPNGLNVKKFSAMHEFQNLHQTAKEKIHDFVRGHFYGHNNFEPEN 310
                   ************************************************************************************************* PP

                   EEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHC---T-EEEEEEE----EECB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-....--- CS
  Glycogen_syn 292 tlyffiaGryefsnkGadifieslarlnyllkvekskktvvaflilpaktnsfnvealkgqavvkqlkdtvdevkekvGkrlfekllkge....lpe 384
                   tlyff+aGrye++nkG+d+fieslarln++lkv++sk+tvvaf+i+pa+t+s++veal+gqav+k+l+dtvd++++ +Gkrlf+++++++    +p+
    KKY15870.1 311 TLYFFTAGRYEYRNKGVDMFIESLARLNHRLKVSGSKTTVVAFIIMPAQTTSLTVEALRGQAVIKSLRDTVDVIERGIGKRLFDRSVHWKegepMPD 407
                   ****************************************************************************************998999*** PP

                   GGGSS-HHHHHHHHHHHHHC---S---SBSBEES.-TT-HHHHHHHHTT-S--TT-SEEEEEE-S---TTSSSS---HHHHHHH-SEEE---SSBSS CS
  Glycogen_syn 385 adellkkedkvllkrailalkreslppvvthnmiddaedpilesirrvklfnkssdrvkvvfhpeflsstspllgldyeefvrGchlGvfpsyyepw 481
                    +el++++d+v+l+r+++a+kr++lppvvthnm++d+edpil++irrv+lfn++sdrvkv+fhpefl+s++p+l+ldy++fvrG+hlGvf+syyepw
    KKY15870.1 408 DKELITSADRVMLRRRLFAMKRTHLPPVVTHNMLNDSEDPILNQIRRVQLFNHPSDRVKVIFHPEFLNSSNPVLPLDYDDFVRGTHLGVFSSYYEPW 504
                   ************************************************************************************************* PP

                   -HHHHHHHHTT--EEEETTBHHHHHHHHH-TTGGGGTEEEE--SSS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGGBHHHHTHHHHHHH CS
  Glycogen_syn 482 GytpaectvmGipsvttnlsGfGcfmeeliedakdyGiyivdrrfkslddsveqlaqflyefvkksrrqriiqrnrterlsdlldwkrlGlyyvkar 578
                   GytpaectvmG+ps+ttnlsGfGc+meelie+++dyGiyivdrr k++ddsv+ql++++++f++ks+rqri+qrnrterlsdlldwkr+G++yvkar
    KKY15870.1 505 GYTPAECTVMGVPSITTNLSGFGCYMEELIENSSDYGIYIVDRRAKGVDDSVNQLTNYMFDFSQKSKRQRINQRNRTERLSDLLDWKRMGMEYVKAR 601
                   ************************************************************************************************* PP

                   HHHHHHH-TT.......HHHHHHHHTTTS-XXX..............XSSXXXXXXXXX CS
  Glycogen_syn 579 klalrraypdkf..keeveelisdeelkisrpasvppspsss.vyltpsdasslqesdd 634
                   +lalrraypd+f   e+ ee+i  +e+kisrp+svp+sp+++  ++tp+d++slqe  +
    KKY15870.1 602 QLALRRAYPDSFdeDEDFEEVIGGTEQKISRPLSVPGSPRDRtGMMTPGDFASLQEGRE 660
                   ************43345679999****************98879**********99765 PP

>> SGS  SGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   1.3   3.9e-30     1e-26       1      72 [.    1096    1186 ..    1096    1190 .. 0.93

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 3.9e-30
         SGS    1 kdWdklekelekeekeekke...................eegeaalnklFkklYadadedtrrammKSyveSnGtvLstnWeevkkkkvet 72  
                  kdWdkl+++l++++k+++++                   e g+++++ +FkklYa+ad+dtrrammKS+ eS+Gt+LstnW+ev+k++ve 
  KKY15870.1 1096 KDWDKLAADLTAQSKTKERKpkkdgeagadkdansdvdsEYGGDPVDGFFKKLYANADDDTRRAMMKSFEESGGTSLSTNWSEVGKGRVEP 1186
                  7*********97777666667789**************9999**********************************************995 PP

>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         7   1.8e+04      33      58 ..     359     383 ..     341     384 .. 0.66
   2 !   43.6   0.0   1.8e-14   4.6e-11       1      76 []     968    1047 ..     968    1047 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 7
                 ETTEEEEEE.TSCEEEEECEBSS-BET CS
          CS  33 kerslkvki.gkeklliegeLfgpIdp 58 
                 +++sl+v+  ++ + +i+  L++ +d+
  KKY15870.1 359 QTTSLTVEAlRG-QAVIKS-LRDTVDV 383
                 566788888644.566565.8888876 PP

  == domain 2  score: 43.6 bits;  conditional E-value: 1.8e-14
                  SSCEEEEETTEEEEEEE-TTCTTTTTCEEEEEETTEEEEEE....TSCEEEEECE.........BSS-BETTTEEEEEETTEEEEEEEB CS
          CS    1 vkydWyQtldeVvvtiyvkkvnikkkdvkvefkerslkvki....gkeklliege.........LfgpIdpeesswtieskkveitLkK 76  
                  v+++W Q ++ V++tiy+k+v  +k++ +++++e+sl +++    +                  Lf++I+p+ s+ +i+s+kve++L+K
  KKY15870.1  968 VRHEWFQNPQAVTITIYAKNV--PKDKADIDISEDSLFISFphpfNP-------AtaftfslepLFSNIEPSLSRSSIMSTKVEVILWK 1047
                  699*****************9..9999999999***88888323322.......2346667779***********************99 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0029       7.5      11      43 ..     307     340 ..     303     355 .. 0.83
   2 !   14.2   0.0   9.1e-06     0.023      87     127 ..     486     526 ..     480     580 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0029
                      TTTT-EEEEEESS-TTT.TTHHHHHHHHHCCCCC CS
  Glycos_transf_1  11 knekkkiilsvgrleke.Kgvdllikafallkkq 43 
                      ++e+  ++++ gr e++ Kgvd +i+++a+l+ +
       KKY15870.1 307 EPENTLYFFTAGRYEYRnKGVDMFIESLARLNHR 340
                      67889999*******999***********99655 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 9.1e-06
                      HHHHHCESEEEEEESSBSS-HHHHHHHHTT--EEEETTTTH CS
  Glycos_transf_1  87 eellknadifvlpsisEgfGivllEAmaaglpviasnaggp 127
                      + + +  ++ v++s++E++G ++ E    g+p i++n +g+
       KKY15870.1 486 DDFVRGTHLGVFSSYYEPWGYTPAECTVMGVPSITTNLSGF 526
                      6677888899***************************6665 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   5.8e-08   0.00015      62     169 ..     149     273 ..     124     274 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 5.8e-08
  Glyco_transf_4  62 rrlrrllkre..kpDvvHahspaalgaallalrrrlgiplVltvHglye................krllkarlkplsrllralerrl.lrradrv 137
                     + l + + re  +  v H h + a++a  l  +r+ ++ +++t H +                  +  + a  +++ ++ r++ +r+ ++++d +
      KKY15870.1 149 WFLGEFIAREtdRAVVAHFHEWLAGVAIPLTKKRHMDLTTIFTTHATLLgrylcagsvdfynnlqYFDVDAEAGKRGIYHRYCIERAsAHSCDVF 243
                     55556666666555566*******9999999999**************************9999844445555566666666555555******* PP

  Glyco_transf_4 138 iavSeatadelrerygvppekitVipnGvDle 169
                     ++vS+ ta e +++++   ++  V+pnG +++
      KKY15870.1 244 TTVSHITAYESEHLLKR--KPDGVLPNGLNVK 273
                     *************7775..55688****9875 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0032       8.2       5      38 ..     315     345 ..     311     383 .. 0.77
   2 !   11.1   0.0   0.00016       0.4      65     110 ..     484     536 ..     472     561 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0032
                      EEES--.-GG.GTHHHHHHHHHHHH.HHEEEEEES CS
  Glyco_trans_1_4   5 lfvGrl.eenvkgvdllleavpllrkkdvrlvivG 38 
                       + Gr+ ++n kgvd+++e +++l ++   l + G
       KKY15870.1 315 FTAGRYeYRN-KGVDMFIESLARLNHR---LKVSG 345
                      6789**5556.************9955...55554 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00016
                      HHHHHHHH-SEEEE--..---SHHHHHHHHTT-EEEE-TGGG....TTT--.T CS
  Glyco_trans_1_4  65 dlaellaaadvfvaPs..egfglkllEamaaglpvVatdvgg....iaevv.g 110
                      d +++++  ++ v+ s  e +g++  E   +g+p ++t+++g    ++e++ +
       KKY15870.1 484 DYDDFVRGTHLGVFSSyyEPWGYTPAECTVMGVPSITTNLSGfgcyMEELIeN 536
                      5678899999*****************************97733444555552 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.2e-06    0.0031      61     146 ..     149     256 ..      92     269 .. 0.71
   2 ?   -2.7   0.0       2.7   6.9e+03       9      51 ..     329     371 ..     326     400 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.2e-06
  Glyco_trans_4_4  61 ralrrllrqrrerpdvvhahsptaglaarlarrrr.giplvvtlh...................glllrrg.....sgavrrly.ral.errll 127
                      + l ++++++  r  v h h+++ag a+ l + r+ ++  ++t h                   +     +      + +r +y r + er+++
       KKY15870.1 149 WFLGEFIARETDRAVVAHFHEWLAGVAIPLTKKRHmDLTTIFTTHatllgrylcagsvdfynnlQ-----YfdvdaEAGKRGIYhRYCiERASA 237
                      333444477999*******************966679********65555555554444443221.....1233336778888854447***** PP

  Glyco_trans_4_4 128 rradavlvvseaeaeelra 146
                      +++d++++vs+  a e + 
       KKY15870.1 238 HSCDVFTTVSHITAYESEH 256
                      **********998866555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.7
  Glyco_trans_4_4   9 elaraLaarGheVtvltpapapgapeleedgvrvhrlpvprrp 51 
                      +++++La++ h++ v  ++ + +a+ ++ ++ +   + + r++
       KKY15870.1 329 MFIESLARLNHRLKVSGSKTTVVAFIIMPAQTTSLTVEALRGQ 371
                      6789999999998886666666655555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.49
# Mc/sec: 7343.73
//
Query:       KKY15871.1  [L=370]
Description: putative farnesyl-pyrophosphate synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-86  288.6   0.0    4.7e-86  288.0   0.0    1.2  1  polyprenyl_synt  Polyprenyl synthetase
  ------ inclusion threshold ------
      0.061   12.8   0.7      0.089   12.2   0.7    1.2  1  DIT1_PvcA        Pyoverdine/dityrosine biosynthesis protein


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.0   0.0   5.2e-90   4.7e-86       2     256 .]      59     323 ..      58     323 .. 0.94

  Alignments for each domain:
  == domain 1  score: 288.0 bits;  conditional E-value: 5.2e-90
                      HHHHHHHHHHHHSSS--HHHHHHHHHHHHHS.CG..HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEETTEE-HHHC..TCHHHHHHHHHHH CS
  polyprenyl_synt   2 elleealeylveagGKrlRpllvllaaealk.ee..eeelekaavlawivellhaasLvhDDimDdsetRRGqpcahrl..vGnklAindgdfl 90 
                      +++ ++le+++  gGK +R+l+v +++  l  ++  +eele + +l+w +ell+a++L+ DDimD s+tRRGqpc++r+  vG++ Aind++++
       KKY15871.1  59 DWFVRSLETNC-VGGKLNRGLAVPDTCMHLLqRPltSEELELSSSLGWLTELLQAFFLITDDIMDGSITRRGQPCWYRVdgVGMI-AINDAIMI 150
                      689999*****.***************999943377579****************************************889998.******** PP

                      HHHHHHHHHHHH..STT.HHHHHHHHHHHHHHHHHHHHHH..HHTTTTTCCC.SHHHHHHHHHHHTH.HHCHHHHHHHHHHTT.HHHHHHHHHH CS
  polyprenyl_synt  91 larafellaklf..eks.lellelfsevllqtveGqlldl..eeekdddlskfsleeyleivkyKTa.ylfalpvalaallag.asdeelealk 177
                       + ++ +l+k f  ++  ++++el++ev++qt+ Gq++dl    e+++dls+fs+e+++ iv yKTa y+f+lp+ala+++ + a++++l++++
       KKY15871.1 151 NTSISVILKKRFrsHPAyVDFIELLNEVTFQTELGQMCDLitAPEDNVDLSNFSMEKFKFIVIYKTAyYSFYLPFALALYYLQlATPKNLKQAH 244
                      ************986667*********************98844458************************************555699***** PP

                      HHHHHHHHHHHHHHHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHHCT-HHHHHHHHHHTT.SSHHHHHHHHHHHHHH CS
  polyprenyl_synt 178 diglelGlaFQiqDDylDlfgdpevlgKpagtDiqegkctlpilkalelaspeqrkvlkeilg.kkaekeedvkealell 256
                      di+ ++G++FQ qDDylD +gdp+v+gK+ gtDiq++kc++++++al +a+peqr+vl+e++g k++e+e++vk++++++
       KKY15871.1 245 DILIPMGEYFQAQDDYLDAYGDPSVIGKI-GTDIQDNKCSWLVNQALVRATPEQRQVLDENYGrKNSENEAKVKALYKEM 323
                      *****************************.*********************************9999**********987 PP

>> DIT1_PvcA  Pyoverdine/dityrosine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.7   9.9e-06     0.089     116     203 ..     278     368 ..     266     370 .] 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.9e-06
                 .............TT-HHHHHHHHHHHH---HHHHHHHHT...TSHHHHHHHHHHHHHHHHHH..--TT--S-HHHHHHHHHHHHHHHHHH CS
   DIT1_PvcA 116 eeeseellseeeyleeaeklrkeLlksfgedeeelrkeik...ededtlalYrgfskflleDlaslpeakklskkklkkevkkvakemikR 203
                 ++++ ++l ++ +++ +++ r+ L +++g++++e ++++k   ++ +  +lY++f +   ++l+++  + + s+   k+  +++ +++ kR
  KKY15871.1 278 QDNKCSWLVNQALVRATPEQRQVLDENYGRKNSENEAKVKalyKEMELEKLYQDFEEKSVTNLKKMIDEVDESEGLKKQAFESFLNKIYKR 368
                 566677888999****************************9999*******************8888888888888887777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       935  (0.0521501); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 2323.56
//
Query:       KKY15872.1  [L=587]
Description: putative translation initiation factor eif-2b subunit family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-24   85.3   0.2    5.9e-24   84.7   0.2    1.3  1  IF-2B           Initiation factor 2 subunit family
    3.9e-10   39.9   0.0    7.8e-10   38.9   0.0    1.4  1  NUDIX           NUDIX domain
  ------ inclusion threshold ------
       0.11   12.6   0.0       0.19   11.7   0.0    1.4  1  T3SS_LEE_assoc  Type III secretion system subunit


Domain annotation for each model (and alignments):
>> IF-2B  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.2   9.9e-28   5.9e-24       3     280 ..     198     560 ..     196     562 .. 0.81

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 9.9e-28
                 -SHHHHHHHHHHHHHHHHHHCC...CSTHHHH......HHHHHHHHHHHH.TSSTS-.HHHHHHHHHHHHHHHCCTTTSSHHHHHHHHHHHHHHHHHHH CS
       IF-2B   3 rGspaiaiaalevllevikdak...tskvaeL......keelrkaidlLk.karPta.vslgnairrllkeiselksssdvkeakksliekikelikei 90 
                 +G+  +a +ale l++++kd       k +++      ++ lr a+ +L+ + rP++   +++ai  +l+  +  k ++      +++ + + + i+e 
  KKY15872.1 198 NGARVLATKALECLQKIVKDFGeniSGKEEQMgedsewWTCLRVAAWQLIySGRPSMnAAISSAILKALR-GALPKIHTGSMTGFQEIESVLSQTISER 295
                 5777778888888888888766444344455567777788888776555415677642566777777777.2233344444445566778889999*** PP

                 HHHHHHHHHHHHTTC........-TTEEEEEES--SHHHHHHHH..HHHTTEEEEEEEEEXTTTTHHHTHHHHHHHT..........TXEEEEEEGGGH CS
       IF-2B  91 eeadekigdiaaeli........kdgdtilTicnsktvlevlra..aakekkkfkVivvEsrPrlqGrltakeLvqa..........gipvtlitdsav 169
                  ++  ki+++ + +i         d+ ti+T ++s+t+ + + +  a + + k++   +EsrP ++G  +a +L                +t+i+d+ +
  KKY15872.1 296 SASSTKISKAFESYIsslenwpfLDEITIVTLSSSSTIRASILHllASHTNLKLQLHILESRPLCEGASLAASLITSfreistsdlgRLKITIIPDTHI 394
                 **********************9***************999999877788899999***********7777777553221111122245789******* PP

                 HHHHHC...TESEEEEEXSEEETTSEEEEETTHHHHHHHHHHT..TXEEEEEXXGGGBESTSSSGGGSSXXBEXTHHHHEETTEESSTT.......... CS
       IF-2B 170 ayvmse...evdkvivGAdrilenGaiankiGTsslAvlAkef..nipvlvvaeslkfservqldedifieerdpeellnitgeriaee.......... 253
                  +++s+   +   +++GAdri + G ++nk+G++s A++++    ++++ v+ e+ k+ +  +l+ +  i     + +   ++++++e+          
  KKY15872.1 395 THIISTpssSARILLLGADRISRSGNVSNKMGSLSAAIICRTLcpDMKIVVCSETDKIAKPSSLSIVEKITSMSGAAIEEESQKEMQEHlpesndakev 493
                 ******9999*******************************954489************99887777777777777776666666655589999999** PP

                 ........................................TEEEEEBSEEEEEGGGXSEEEETTEEE CS
       IF-2B 254 ........................................elkvvnpafDvtPpelItliITevGvl 280
                                                         ++kv n+ f  +P+++I+++++++Gv+
  KKY15872.1 494 trvwevagagkdvletltlssktrpgdveaqgttakrksqQVKVENIYFEWVPAKYIDAYVSDEGVI 560
                 *****************************************************************97 PP

>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   1.3e-13   7.8e-10      15     117 ..      29     142 ..      19     155 .. 0.74

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 1.3e-13
                 SE..EEEEEES....SSSTTT.EESSEEECBTTS.HHHHHHHHHHHHHHSEEE.EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE...EEECSGCSSTST CS
       NUDIX  15 ge..vLlvrrs....kkpfpg.WelPgGkvepgE.tpeeAArREleEEtGlea.ellellgrlhylapydgpygdeheilyvfl...eevegelepnde 101
                 +e  v l +rs     ++ +g  + + G +++ + +p +AA+RE++EEt l   ++l l   + + +++ + +  + + +y f    + v  e   + +
  KKY15872.1  29 KEtlVALFKRShhpdLHTYQGkLAPISGSIDASDaNPLAAAIREIREETHLVTdKDLSLGF-CGKPFSFADEKIGRSWTVYPFGwkfAGVSAESSIQID 126
                 23579999999655555555555799************************86657776554.3333444444443888888888889888888888899 PP

                 TTEEEEEEEEHHHHHH CS
       NUDIX 102 nevsevrwvpleellk 117
                  e+s+++wv +e++l 
  KKY15872.1 127 WEHSGWEWVQPEQVLS 142
                 *************943 PP

>> T3SS_LEE_assoc  Type III secretion system subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.2e-05      0.19      15      51 ..     232     269 ..     228     309 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.2e-05
  T3SS_LEE_assoc  15 dpaWlaalglkpwqdrYgrspaldaaldrllik.rrgl 51 
                     d +W++ l + +wq +Y  +p ++aa+  ++ k  rg 
      KKY15872.1 232 DSEWWTCLRVAAWQLIYSGRPSMNAAISSAILKaLRGA 269
                     679************************98765515553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4000.18
//
Query:       KKY15873.1  [L=936]
Description: putative sh3 domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-12   45.6   0.1    1.5e-11   44.7   0.1    1.4  1  Transglut_core  Transglutaminase-like superfamily


Domain annotation for each model (and alignments):
>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.1   8.6e-16   1.5e-11      11     111 ..     459     558 ..     449     559 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 8.6e-16
  Transglut_core  11 akdplekakaiyewvrknveysaprrtpgsrdaeavletgkGncedfaslfvallRalGipaRvvtgylsgeeekeq..svasedaHawvevyle 103
                       ++ ++++ai +wv++++ ++  +   g+ d + v+++++G + ++a+l v ++ a+Gi+a +v gyl+++ e+ +   + s  +H w+   + 
      KKY15873.1 459 HRTDVQRLRAIFTWVSEKIVWD--EEFEGDIDTRRVIQSKRGCSHEVAALVVDMCAAVGIHAEIVRGYLKSPGEDLDldANLSHPNHYWNSMLI- 550
                     567789****************..99********************************************9988777876666667********. PP

  Transglut_core 104 gygWvplD 111
                     ++ W  +D
      KKY15873.1 551 DGEWRIMD 558
                     99998888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (936 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 6376.22
//
Query:       KKY15874.1  [L=329]
Description: hypothetical protein UCRPC4_g06060 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-20   71.6   5.7    8.5e-20   71.3   5.7    1.1  1  Cellulase  Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   5.7   4.7e-24   8.5e-20       9     279 ..      13     298 ..       5     300 .. 0.74

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 4.7e-24
                 EGEEECETTSCGGSHHHHHHHHHHHT-SEEEEEEEC...TGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS.TTT.CSSSSTTTTHHHHH CS
   Cellulase   9 nlkglstswgnpyttkalidevkdagfntvRlpvsw...gelvenapdykvdenslerveevvkyakenglyvildiHse.egw.ltkadgnssedtae 102
                 + ++++++w +   t++ i+++ + g nt+R+pv++   + +v ++++y + +   + +e+v  +a e g+y+i+d+H   +   + +++++++++++ 
  KKY15874.1  13 ANSAFQAHWARW-ITEDDIATMSSYGLNTIRIPVGYwmdEDIVYTDSEY-FPQGGQAYLEQVCGWASEYGFYIIIDLHGApG-AqVAEQPFTGQYASTA 108
                 456788899985.899999***************955987888889999.999999***********************963.4367888888888888 PP

                 HHHHH........HHHHHHHHHTTTTT..TE.EEESSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTTSSEEEEECHHHHT....BHHHHHCT. CS
   Cellulase 103 effkk........lwtqiAerykknde..vv.ifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgpnrliivegnswsg....nldgavln. 185
                  f+++        ++ ++A+    +++  +v + e++NEP ++++         + + +y+ +a+ aIR++ ++    + +n++      +      n 
  KKY15874.1 109 GFYQDyqysraysFLSWMANLIHTKNNfrNVgMLEVVNEPISGES---------TLISEYYPNAYSAIRDAESSL--SISSNNYLHiqfmDT-----Nw 191
                 8888888888888899999987655554566267********544.........569**************9963..333333333222111.....12 PP

                 ...SGSS...SSTTEEEEEEEETTTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHTTSEEEEEEEESS...TTSSH...........HHHHHHHHH..H CS
   Cellulase 186 ...dPnd...sqdnliysvHfYgpsdfaqtefgkdltdktnlaqrledaakylvekgipviigEfGgs...nadgd...........lakeeaekw..l 262
                    dPn+    +    y+ H+Y+ +d + t +     +++ l+   +  a+ + + + p+iigE+  s   +               +++e  +kw  +
  KKY15874.1 192 gagDPNAdlsDTYFASYDNHQYPKYDSSITPS-----QSNYLD--AACSANPASDGDTPLIIGEWCISpatD---VqddsefeisdtTNTEFYQKWfaA 280
                 2336633322245667999*******766666.....334444..344567889************996552...234467898888888889999874 PP

                 HHH.HHTTTEEEEEEESS CS
   Cellulase 263 dyl.kekgiswiyWslnp 279
                 +++  e +++wi+Ws+++
  KKY15874.1 281 QATtYESQLGWIFWSWKA 298
                 43325669********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2250.33
//
Query:       KKY15875.1  [L=1052]
Description: hypothetical protein UCRPC4_g06061 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-13   50.4   0.6    1.9e-05   24.0   0.0    2.9  3  HDA2-3          Class II histone deacetylase complex subunits
  ------ inclusion threshold ------
       0.22   12.3   8.3       0.31   11.8   0.8    3.4  2  CP12            CP12 domain
       0.44   10.8  16.1      0.094   13.0   0.8    3.8  3  HALZ            Homeobox associated leucine zipper
       0.88    9.6   6.0       0.59   10.2   0.2    3.5  4  Bcr-Abl_Oligo   Bcr-Abl oncoprotein oligomerisation domain
        1.5    8.1  35.2        3.9    6.8  20.3    3.0  2  GAS             Growth-arrest specific micro-tubule binding
        2.5    8.2  18.2      0.072   13.1   5.6    3.3  3  CtIP_N          Tumour-suppressor protein CtIP N-terminal dom
        4.9    5.9  36.4        5.8    5.7  17.6    3.1  3  Spc7            Spc7 kinetochore protein
        5.9    6.9   6.3         33    4.5   0.9    2.6  2  Baculo_PEP_C    Baculovirus polyhedron envelope protein, PEP,
        6.4    7.3  12.4         13    6.2   2.5    4.5  4  LPP             Lipoprotein leucine-zipper
        6.8    6.8  14.0        8.2    6.5   3.2    3.1  3  DUF1664         Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.1e-08   1.9e-05       4     124 ..     413     528 ..     410     556 .. 0.87
   2 !   23.2   0.0   1.8e-08   3.3e-05     198     274 ..     577     651 ..     569     660 .. 0.90
   3 ?   -2.2   0.9      0.99   1.8e+03     147     192 ..     957     999 ..     861    1004 .. 0.61

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.1e-08
                 SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH.HHHHHHHH.HHHHHHH-GGGT-.-TT--S-S-STTHHHHHHHT-HHHHHHHHHHH CS
      HDA2-3   4 gdyylPtpltelqkelteqivslhyedllkyvetsdsqeklslsikslticlenlslvanHPsLLv.dHympkklllkelpeklaetSgKFkvlndlvn 101
                  +y +P+p     ++l+   ++l  +d+ k++   d++ ++sl ++ +t ++e+l l   H + ++ + +  ++   ++++ +  + S K+++l++ ++
  KKY15875.1 413 LEYVVPLPVEGKMRDLYLEAIKLKENDIAKFL-AADRKPSTSL-VETMTSFIEQLGLATAHTDYVIqESMTQSDVPASQEAIWDDYASTKYAFLGHTLD 509
                 58*****************************9.7788888888.9****************998661556678899*********************** PP

                 HHTTSS....EEEEEEE-STHHH CS
      HDA2-3 102 liierkrksslnvlvvakskkel 124
                  + e+     +++ ++a+s +  
  KKY15875.1 510 SLRESA----TSIQIIARSPRVR 528
                 ******....9999999998755 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 1.8e-08
                 EEEEEE-SST--TTSHHHHHHH----------EEEEEETTSHHHHHHHHTS-TT-HHHHHHHHHHHHHHTTTTT--- CS
      HDA2-3 198 fdliiafDssvdtsspsveslrtqnrkknklpiirlvpinSieHvkLcfkkdedepeylekvissivvlrdevGkLp 274
                 +dlii+f  s  ++s  + +  +q+ +  ++p++ l + nS+eH+ Lc +kd++  e+l+ +++ ++  r + Gk++
  KKY15875.1 577 LDLIIVFEASDVVRSGIIDQSHNQQGR--TIPLVHLTVKNSPEHAALCLPKDTPPLEILKALVKEVIASRRMLGKID 651
                 589999999988888888888888775..8********************************************997 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.99
                 --S---S-...................-SEEEEEEESS---TTTS-- CS
      HDA2-3 147 ydekkkkskdtkkns.rktkeklkkkihsltihllsttrqltkdksl 192
                 +dek+k +   +  + ++++++  ++i++ + +++s + ql+++++ 
  KKY15875.1 957 SDEKRKLK---ET-NfTNDRDRYLNHISQEQALSFSLNAQLQRKDDE 999
                 22333333...12.134555555677777777777777777776655 PP

>> CP12  CP12 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.8   0.00017      0.31       4      54 ..     871     922 ..     869     928 .. 0.87
   2 ?    3.6   1.9     0.065   1.2e+02       9      53 ..     918     963 ..     910     971 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00017
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX-TTCHH CS
        CP12   4 kiekaieearevcaekgansaecaaawdeVeeLqaeaah.qrakkkektsLe 54 
                 k++ +++e+r++ +e g++ ae   a + V +L++e++  +++ ++ k+ +e
  KKY15875.1 871 KLQTELSEVRSALKEGGGTAAEIEIAKEQVRQLEKEKSTiEKSYNNMKKDFE 922
                 7899***********************************5555577788777 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.065
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX-TTCH CS
        CP12   9 ieearevcaekgansaecaaawdeVeeLqaeaahqra.kkkektsL 53 
                 +++ + v ++++++s+ +a+    V+ L++e  h +  ++ ek +L
  KKY15875.1 918 KKDFEFVRQQYQNASTAAAESASQVQGLEEEINHLKIaASDEKRKL 963
                 5666677788888999999999999999999999665346666655 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.3      0.81   1.5e+03      13      35 ..     773     792 ..     771     804 .. 0.78
   2 ?   13.0   0.8   5.2e-05     0.094      16      42 ..     857     883 ..     853     884 .. 0.90
   3 ?    6.2   1.0    0.0066        12       1      27 [.     901     927 ..     901     930 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.81
        HALZ  13 sYdaLksdydsLkkenekLkael 35 
                 + d Lk   + L++  ++L +e 
  KKY15875.1 773 QLDTLK---EELRQAQQSLAKER 792
                 567788...88888888888875 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 5.2e-05
        HALZ  16 aLksdydsLkkenekLkaelqeLkekl 42 
                 +L +d+  Lk+e++kL++el e ++ l
  KKY15875.1 857 KLMADNGTLKEEKRKLQTELSEVRSAL 883
                 6899*****************998765 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0066
        HALZ   1 KQLErDYdvLKasYdaLksdydsLkke 27 
                 +QLE++  +  +sY+++k d++ ++++
  KKY15875.1 901 RQLEKEKSTIEKSYNNMKKDFEFVRQQ 927
                 5*********************99987 PP

>> Bcr-Abl_Oligo  Bcr-Abl oncoprotein oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.5   4.5e+03       7      32 ..     200     225 ..     197     228 .. 0.80
   2 ?   10.2   0.2   0.00033      0.59      24      51 ..     765     792 ..     755     797 .. 0.93
   3 ?   -0.7   0.2       0.8   1.4e+03      31      47 ..     891     907 ..     882     913 .. 0.85
   4 ?   -2.9   0.0       4.1   7.3e+03      24      52 ..     940     968 ..     921     969 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.5
  Bcr-Abl_Oligo   7 raWraefPeeevPkmeLdsvedieqe 32 
                    + W ++ P+ e P +  +s   + +e
     KKY15875.1 200 EDWGSQIPGCEEPSLGRKSQAFVSRE 225
                    78***********9987776666665 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00033
  Bcr-Abl_Oligo  24 dsvedieqeLerCkaslrrLekelneek 51 
                    +sv+d + +L++ k++lr+ ++ l++e+
     KKY15875.1 765 NSVNDSQSQLDTLKEELRQAQQSLAKER 792
                    79*************************8 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.8
  Bcr-Abl_Oligo  31 qeLerCkaslrrLekel 47 
                     e+e  k+++r+Leke 
     KKY15875.1 891 AEIEIAKEQVRQLEKEK 907
                    689999*******9985 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 4.1
  Bcr-Abl_Oligo  24 dsvedieqeLerCkaslrrLekelneekf 52 
                    + v+ +e+e+++ k      +++l+e  f
     KKY15875.1 940 SQVQGLEEEINHLKIAASDEKRKLKETNF 968
                    34788888888888777777777766655 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   8.4     0.013        22      44     110 ..     762     829 ..     758     842 .. 0.83
   2 ?    6.8  20.3    0.0022       3.9      31     162 ..     837     965 ..     832    1002 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.013
         GAS  44 rnekelseisqenkrlkepLkkaeeeveeLrk.qlknyekdkqslknlkarlkelekelkdlkwehev 110
                 + ++ +++ +++   lke+L++a++ +++ r+ ++ + +  k+s + +  +l+e+ +el++l++ +e 
  KKY15875.1 762 HISNSVNDSQSQLDTLKEELRQAQQSLAKEREeRAVEISDLKASVEGTLVKLEETSMELRKLQLRYET 829
                 66788899999999999999999999987766367788888999999999999999999999999886 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0022
         GAS  31 lKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkf 129
                  + +i++ +  +e++  + +++ ++n  lke+ +k++ e+ e r +lk+     ++++ +k+++++leke ++++ +++++++ fe v +++++ +   
  KKY15875.1 837 SRRQIKKFEVDKEADAARRAKLMADNGTLKEEKRKLQTELSEVRSALKEGGGTAAEIEIAKEQVRQLEKEKSTIEKSYNNMKKDFEFVRQQYQNAS--- 932
                 577888888899999999999*****************************************************************9977776665... PP

         GAS 130 eaaiqevqqktglknllLekklkalqeelEkke 162
                 +aa + ++q  gl++ +   k++a +e+   ke
  KKY15875.1 933 TAAAESASQVQGLEEEINHLKIAASDEKRKLKE 965
                 555555556666666666666666666655555 PP

>> CtIP_N  Tumour-suppressor protein CtIP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2      0.88   1.6e+03      13      23 ..     778     788 ..     753     815 .. 0.57
   2 ?   13.1   5.6     4e-05     0.072      10      92 ..     828     910 ..     816     919 .. 0.81
   3 ?   -0.5   4.2      0.66   1.2e+03      78     117 ..     922     965 ..     894     969 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.88
      CtIP_N  13 ekevqglqekv 23 
                 ++e++++q+ +
  KKY15875.1 778 KEELRQAQQSL 788
                 22333333333 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4e-05
      CtIP_N  10 eiHekevqglqekvlelkkercldaqrleelfsknqqlreqqkalkenikvlenrLraglCdrCavtqelakkkqqefesskl 92 
                 e+  +ev   ++++++ + ++  da r  +l++ n +l+e+++ l+ +++   + L+ g     ++   + + +q e e+s +
  KKY15875.1 828 ETRTREVYTSRRQIKKFEVDKEADAARRAKLMADNGTLKEEKRKLQTELSEVRSALKEGGGTAAEIEIAKEQVRQLEKEKSTI 910
                 677899**************************************************998766665544444444555555554 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.66
      CtIP_N  78 elakkkqqefessklqslqlitiLtnEmntLk....eenkkLke 117
                 e ++++ q+  ++  +s ++++ L++E n+Lk    +e +kLke
  KKY15875.1 922 EFVRQQYQNASTAAAESASQVQGLEEEINHLKiaasDEKRKLKE 965
                 667888888899999999***********997555577777776 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       1.9   3.4e+03     144     196 ..      89     141 ..      88     142 .. 0.84
   2 ?    2.3  20.4     0.036        65     146     281 ..     762     906 ..     757     908 .. 0.64
   3 ?    5.7  17.6    0.0032       5.8     155     265 ..     855     965 ..     837     994 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.9
        Spc7 144 leenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesi 196
                 +e++l+ l++ +el+  +   +++  p++++++a l++  +++ +  +e es+
  KKY15875.1  89 AEQRLKPLRNNEELVRPEYRSVNSKGPRIKARRAILSSPTTQEVASTQETESC 141
                 57788888899999999999999999999999999999999999988888887 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.036
        Spc7 146 enlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles....idkeeLeelreelaelkaeieekkkelaelqeqle.......ele 233
                 ++ +++++ +++L+  +eel ++ ++l +e++e   e+ +l++ +e         ++ eL++l+ + ++   e+   ++++++ + ++e       +l 
  KKY15875.1 762 HISNSVNDSQSQLDTLKEELRQAQQSLAKEREERAVEISDLKASVEGT-LvkleETSMELRKLQLRYETRTREVYTSRRQIKKFEVDKEadaarraKLM 859
                 455566667777777777777777777777777777777777744321.12332346777777777777777777777777766655541000000444 PP

        Spc7 234 ekieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkaleel 281
                 ++  +lke+k++l++e++e ++ l+e  g ++ e++  ke+v++le++
  KKY15875.1 860 ADNGTLKEEKRKLQTELSEVRSALKE-GGGTAAEIEIAKEQVRQLEKE 906
                 44456788888888888888888775.566899999999999999986 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0032
        Spc7 155 kelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaea 253
                 +++L++++  l+e + +l++e +e+++ l++    a+e+ +i ke++++l +e +++++ +++ kk+ + +++q ++ +++ +e ++q + leeei++ 
  KKY15875.1 855 RAKLMADNGTLKEEKRKLQTELSEVRSALKEGGGTAAEI-EIAKEQVRQLEKEKSTIEKSYNNMKKDFEFVRQQYQNASTAAAESASQVQGLEEEINHL 952
                 345555555555555555555555555555555566664.37888888888888888888888889999999999999999999999999999998877 PP

        Spc7 254 erv.leeckgwse 265
                 +    +e+++ +e
  KKY15875.1 953 KIAaSDEKRKLKE 965
                 6430344444444 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.9     0.018        33      34      75 ..     761     802 ..     752     825 .. 0.58
   2 ?    4.4   0.4      0.02        36      35     111 ..     864     952 ..     853     970 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.018
  Baculo_PEP_C  34 aqlatlldaietqLnalsedlksllaeldtrldtlltnLtda 75 
                   + +++ +++ ++qL++l+e+l+++ ++l+++ ++ + +++d 
    KKY15875.1 761 THISNSVNDSQSQLDTLKEELRQAQQSLAKEREERAVEISDL 802
                   556777777777777777777777666666333333333322 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.02
  Baculo_PEP_C  35 qlatlldaietqLnalsedlksllaeldt.........rldtlltnLtdalnalq...dtlrneLtnlnsiltnLlssvtNinstLnnl 111
                    l++ + +++t+L+++ ++lk+     ++         +l++  ++++++ n+++   + +r++ +n  +  ++ +s+v ++++ +n l
    KKY15875.1 864 TLKEEKRKLQTELSEVRSALKEGGGTAAEieiakeqvrQLEKEKSTIEKSYNNMKkdfEFVRQQYQNASTAAAESASQVQGLEEEINHL 952
                   56667777777777777777764433333445667777888888899999999988888899999999999999999999988888876 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   2.5    0.0075        13       2      36 ..     760     794 ..     759     796 .. 0.91
   2 ?   -1.2   0.0       1.6   2.8e+03       7      32 ..     860     885 ..     856     891 .. 0.80
   3 ?    2.5   0.2      0.11     2e+02       8      32 ..     899     923 ..     894     940 .. 0.66
   4 ?    1.6   0.1       0.2   3.6e+02       7      25 ..     940     958 ..     936     967 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0075
         LPP   2 ldeLssqVsqLkskvdqlssdvnsakaaaqaakeE 36 
                 ++ +s+ V++ +s+ d l++++ +a++ +++ +eE
  KKY15875.1 760 VTHISNSVNDSQSQLDTLKEELRQAQQSLAKEREE 794
                 678***********************999988877 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.6
         LPP   7 sqVsqLkskvdqlssdvnsakaaaqa 32 
                 ++  +Lk++  +l+ +++++++a+++
  KKY15875.1 860 ADNGTLKEEKRKLQTELSEVRSALKE 885
                 56678999999999999999999875 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.11
         LPP   8 qVsqLkskvdqlssdvnsakaaaqa 32 
                 qV qL+++ + +++  n++k++ + 
  KKY15875.1 899 QVRQLEKEKSTIEKSYNNMKKDFEF 923
                 7777777777777777777666543 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.2
         LPP   7 sqVsqLkskvdqlssdvns 25 
                 sqV+ L+++++ l+  +++
  KKY15875.1 940 SQVQGLEEEINHLKIAASD 958
                 7888888888877755554 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   3.2    0.0046       8.2      43     109 ..     760     826 ..     749     846 .. 0.76
   2 ?    5.3   1.7     0.011        19      56     109 ..     864     920 ..     855     933 .. 0.76
   3 ?    3.4   1.6     0.042        76      48     100 ..     901     953 ..     889     965 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0046
     DUF1664  43 vesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkea 109
                 v+++s+++++ +++l + k++L +  +++ k+ +e +  ++++k+ v+    +l+e++ ++++++  
  KKY15875.1 760 VTHISNSVNDSQSQLDTLKEELRQAQQSLAKEREERAVEISDLKASVEGTLVKLEETSMELRKLQLR 826
                 5677888888888888888888888888888888888888888888888888888888887777654 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.011
     DUF1664  56 slaatkrhLssridrvdkkldeqkeiskei...keevtevredlseigedvesvkea 109
                 +l++ kr+L+ ++ +v + l+e   +++ei   ke+v +++++ s+i++  +++k+ 
  KKY15875.1 864 TLKEEKRKLQTELSEVRSALKEGGGTAAEIeiaKEQVRQLEKEKSTIEKSYNNMKKD 920
                 78999**************99976555554222678888888888888887777664 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.042
     DUF1664  48 kqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseig 100
                 +qle+ ++++++  ++++++ + v ++ ++ + +++e +++v+ ++e++++++
  KKY15875.1 901 RQLEKEKSTIEKSYNNMKKDFEFVRQQYQNASTAAAESASQVQGLEEEINHLK 953
                 46777777777777777777777777777777777777777777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1052 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2001  (0.111607); expected 358.6 (0.02)
Passed bias filter:                      656  (0.0365888); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        48  (0.00267723); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.35u 0.34s 00:00:01.69 Elapsed: 00:00:00.62
# Mc/sec: 5138.72
//
Query:       KKY15876.1  [L=1007]
Description: putative heterokaryon incompatibility [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-17   61.9   0.0    2.3e-16   60.5   0.0    1.8  1  HET       Heterokaryon incompatibility protein (HET)


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0   1.3e-20   2.3e-16       1     146 []     192     346 ..     192     346 .. 0.78

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 1.3e-20
         HET   1 YeaLSYvWgdsk....................ekeeievngklleltenledalqvlrklgerylWiDaiCInQdddkekskqvqlmadIYsnAelviv 79 
                 + a+SY+W +++                    + ee       +   e +++a+q +r++g+r++WiD++C  Qd++ + +  +q m+ +Y++A++ i 
  KKY15876.1 192 FLAVSYCWPKDHlgnpsyaprtysfrrmnefgNYEEA----VCTPHDEAVDRAVQFARENGIRMIWIDQVCLPQDESYDHQLGIQAMDFVYQRAKFAIG 286
                 679*****77777777798888877766555443333....34888999**************************999********************9 PP

         HET  80 algseseds.gllalealralkkekleekeielkksaekkkellekeeraieellespwfkRvWvlQE 146
                    s+  ++  l+a+ ++ +l++  ++  +i++         l ++  +a++ l+  +w++R+W+lQE
  KKY15876.1 287 LYESTLREQrLLDAIFYVLNLAAHGTQP-QIQS-------DVLARDLIDALRFLIGDQWNTRGWILQE 346
                 9999987551333333333333333333.4444.......3578999********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1007 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.27s 00:00:01.10 Elapsed: 00:00:00.50
# Mc/sec: 6070.26
//
Query:       KKY15877.1  [L=221]
Description: hypothetical protein UCRPC4_g06063 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-25   89.4   0.0      4e-25   88.6   0.0    1.3  1  DUF1349   Protein of unknown function (DUF1349)


Domain annotation for each model (and alignments):
>> DUF1349  Protein of unknown function (DUF1349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.0   2.2e-29     4e-25       7     175 ..      13     218 ..       8     220 .. 0.84

  Alignments for each domain:
  == domain 1  score: 88.6 bits;  conditional E-value: 2.2e-29
                 EEEE-.SSEEEEE--TT--EEESTTT--EEE--EEEEEEESS-..EEEEEEEEE---STT-EEEEEEEEE..........TTEEEEEEEEE-SSSEEEE CS
     DUF1349   7 sveeseddsleittepktDfWrrthygfrrdnapflltevagd..ftaevkvkgefkelyDqaGlmlrvd..........eenWlKagieyndgaprlg 93 
                  ++++ ++s+eitt+p+tD+Wr++    + ++ap+++++v+     +a++ +++++ +lyDq+G+++ ++          + +++Kagie+ +++p+l+
  KKY15877.1  13 PSSST-QSSFEITTPPGTDLWRKPPS-IDDFTAPIIYRTVSLSkfRRARISFSASWLTLYDQGGIVFALPqrsgsggdkvNPKFIKAGIEFYENRPQLS 109
                 45445.69****************98.79********77776634567778888899****************************************** PP

                 EEEEESSEEEEEEE--SB.TTSEEEEEEEETTEEEEEEESSSS-.........................--EEEEEE-.-S-S-EEEEEEEE-SS-... CS
     DUF1349  94 sVvtngysDwsvsplpsevskevwlrlsrrgddlaieysldgen.........................wkllRlfhl.dadeevkvGvyacsPkr... 163
                 +V  ++  Dws+  +p ++  ++  +   + +  +ie  ++ e+                         w +    h  d+++e++vG++a++P+    
  KKY15877.1 110 VVAVDRWADWSLFGVPPSL-LNAAAEQGSTSPITTIELEREKEAdgtlgsslwvyllegnvrkplrevtWIF----HElDQERECWVGAFAAKPTAdsd 203
                 ****************975.4556666667777777777666667788999999999999999995555544....444999**************998 PP

                 ...S--EEEEEEEEE CS
     DUF1349 164 ...egfevtFsefel 175
                     g++v F++fe+
  KKY15877.1 204 dpsRGLTVAFENFEV 218
                 8888*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       195  (0.0108762); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.49
# Mc/sec: 1368.87
//
Query:       KKY15878.1  [L=685]
Description: putative s-adenosylmethionine-dependent methyltransferase superfamily domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-75  253.8   0.0    1.7e-75  253.1   0.0    1.3  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
    5.9e-09   36.3   0.0    1.6e-08   34.9   0.0    1.7  1  Methyltr_RsmF_N  N-terminal domain of 16S rRNA methyltransfer
  ------ inclusion threshold ------
      0.032   14.4   0.0      0.059   13.5   0.0    1.5  1  FtsJ             FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.1   0.0   2.8e-79   1.7e-75       1     200 []     365     575 ..     365     575 .. 0.96

  Alignments for each domain:
  == domain 1  score: 253.1 bits;  conditional E-value: 2.8e-79
                      HHHH---TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCCHHHHCC..EEEEEEEE--CCGGG CS
  Methyltr_RsmB-F   1 allLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDaPCsgtgv 94 
                      +++Lapqe+e++lD++aaPGgKTt+i++lm+n+g+v+A+d n++R+k ++ n++rLg++n+iv++ Da++++k +gg  fDr+LlDaPCsgtgv
       KKY15878.1 365 VMALAPQEDERVLDMAAAPGGKTTYISALMRNTGCVIANDPNRKRAKGLIGNIHRLGCKNVIVSNLDAKEFPKAMGG--FDRVLLDAPCSGTGV 456
                      589*************************************************************************9..*************** PP

                      TTT-TCHHHH--HHHHHHHHHHHHHHHHHHCCCE....EEEEEEEEEES--STTTTHHHHHHHHHH-TTEEEESSBSTTSTTSSECEEC..... CS
  Methyltr_RsmB-F  95 irrdpdvklrrkekdiaqlaklqkellsaaidll....kkgGvlvYsTCsvlveEneevieeaLkkredvelvetelsepkglklgeea..... 179
                      i +dp+vk++++e+d+ +l +lqk+ll aaid++    k+gG++vYsTCsv veEne v++++L+kr++v++v+t + ++    +         
       KKY15878.1 457 IGKDPSVKTSKNERDFLALPHLQKQLLLAAIDSVnhasKTGGYIVYSTCSVSVEENEGVVQYILRKRPNVKIVDTGFGNFGSEGFRSYMnkrfd 550
                      ***************************************************************************9988666555554477899 PP

                      ....TSEEE-TTTTSS-SEEEEEEE CS
  Methyltr_RsmB-F 180 ....gtlrllPhtenkdgffiaklk 200
                           ++r++Ph+en+dgff+ klk
       KKY15878.1 551 dkmsLARRYFPHRENVDGFFVCKLK 575
                      999999****************996 PP

>> Methyltr_RsmF_N  N-terminal domain of 16S rRNA methyltransferase RsmF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   2.7e-12   1.6e-08      13      89 ..     280     361 ..     271     362 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 2.7e-12
                      HGG.GHHHHHHHHH-----EEE--TTS..TTHHHHHHH..-SS--B-.TT-TTEEES---....TTSHHHHTTS-EE--TTT CS
  Methyltr_RsmF_N  13 lge.eaeaflaaleeprkkglRvNtlKisveeleklse..efelepv.pwceeGfyleeeerp.gkhplheaGlyYiQEpSa 89 
                      +   ea af++a e+pr++ +R+NtlK+++++l+++    +++lepv  w++ G  + e++ p g +p++ aG y +Q +S+
       KKY15878.1 280 FSPmEAFAFFEANESPRPVVIRTNTLKTNRRSLAQALInrGVQLEPVgKWSKVGLQIFESTVPlGATPEYLAGHYILQAASS 361
                      44448999**********************99988554479******77******999998878*****************8 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   9.8e-06     0.059      21     137 ..     372     506 ..     336     573 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.8e-06
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS...HHHTTEEEE.CS-C.CCSSHHHHHCHCHHHSSEEEEEE--S-SS-CHHHHHHHHH.... CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm...aplpgvtti.qgdi.tdpetiekikealserkvdlvvsDgapdvsgvhdldeylq.... 110
                 ++++v+D +aaPGg + +++  + ++g v+a D +      ++ +++ + + ++  +   ++++ +a+++  +d v+ D   + +gv  +d  ++    
  KKY15878.1 372 EDERVLDMAAAPGGKTTYISALMRNTGCVIANDPNRKrakGLIGNIHRLgCKNViVSNLDAKEFPKAMGG--FDRVLLDAPCSGTGVIGKDPSVKtskn 468
                 5578******************988899999998775333222444444433433333334444445544..666666665433443333333333444 PP

                 ...........CCCCHHHHCCHCCCCECCCEEEECCCH CS
        FtsJ 111 ...........sqLllaalelalkllkpggtfvlkifr 137
                             qLllaa+    +  k+gg +v  ++ 
  KKY15878.1 469 erdflalphlqKQLLLAAIDSVNHASKTGGYIVYSTCS 506
                 44444455555688888888888888888877766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1113  (0.0620782); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 5175.71
//
Query:       KKY15879.1  [L=233]
Description: hypothetical protein UCRPC4_g06065 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-41  141.2   0.2      4e-41  140.8   0.2    1.1  1  Blt1      Blt1 N-terminal domain
    4.6e-24   83.8   0.1    7.2e-24   83.1   0.1    1.3  1  Blt1_C    Get5 carboxyl domain
  ------ inclusion threshold ------
      0.012   15.7   0.0      0.019   15.0   0.0    1.2  1  GPP34     Golgi phosphoprotein 3 (GPP34)
       0.15   12.6   0.0       0.76   10.4   0.0    1.9  2  DUF2407   DUF2407 ubiquitin-like domain


Domain annotation for each model (and alignments):
>> Blt1  Blt1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.8   0.2   8.9e-45     4e-41       1     150 []       6     157 ..       6     157 .. 0.87

  Alignments for each domain:
  == domain 1  score: 140.8 bits;  conditional E-value: 8.9e-45
        Blt1   1 FaksflaalDsrpvklsadhveDprsyparvpytLprlskphp...empkkvkkaaapgssksitvhlksarnpalelsldnvalattsvkdlkeavqe 96 
                 F+ksfl++lDs+p k sad+v+ p+s+  r+p+tLp+l++p     + p +      +++s ++t+ lks r p l+++l+nv+ ++t++++l+eav++
  KKY15879.1   6 FTKSFLTNLDSKPQKYSADYVFPPSSFTPRTPFTLPKLPHPPYplpPQPTTAAPPPGSTASDTVTLVLKSSRKPPLDVTLNNVSASETTIAQLREAVRK 104
                 9*************************************996541114444444444456678899999******************************* PP

        Blt1  97 rvkeaetkvpldkikiLykkkPv..sgktlaevlasesevleggkevElgvmvlgG 150
                  ++++ +   ++kik+Ly+kkP+  s++t+a+ +++    +++gk++Elg+m+lgG
  KKY15879.1 105 DLEAQGSVADVSKIKVLYNKKPIppSKNTVADAIGN---DVAAGKTIELGIMILGG 157
                 *555556667*************9888********9...5789************9 PP

>> Blt1_C  Get5 carboxyl domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.1   1.6e-27   7.2e-24       2      49 ..     185     232 ..     184     233 .] 0.96

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 1.6e-27
      Blt1_C   2 pkaavgpsgeeVLatEeFWdDLegFleqRvKDeeeaerlrgvFkeAWe 49 
                 p +a+gpsg++VL+t eFWdDL+gFleqR+KDe ea+rlrg+Fk+AW+
  KKY15879.1 185 PSPAQGPSGQQVLETVEFWDDLQGFLEQRLKDETEAARLRGIFKNAWR 232
                 779********************************************7 PP

>> GPP34  Golgi phosphoprotein 3 (GPP34)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   4.3e-06     0.019      56     138 ..      58     144 ..      50     148 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.3e-06
       GPP34  56 srptgdplldealklikaserprsvktwvdlls......ksvrervakgLvdkGilrtekrrflglfdmtthpvadtaakeavrrrvra 138
                 + p+g +  d +  ++k s+r++ ++  ++  s       ++re+v+k L+++G +  + + ++ l  ++  p+ ++++++a+ ++v+a
  KKY15879.1  58 APPPGSTASDTVTLVLK-SSRKPPLDVTLNNVSasettiAQLREAVRKDLEAQGSVADVSKIKV-LYNKKPIPPSKNTVADAIGNDVAA 144
                 46778888888888888.5555668888877778999999*******************77766.7899999**********9988876 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00017      0.76      13      51 ..      82     123 ..      70     149 .. 0.73
   2 ?   -0.5   0.0      0.41   1.8e+03      29      50 ..     206     227 ..     202     229 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00017
     DUF2407  13 DleLdipdpntttvagLkqliRerlpae...lasrrLrLIya 51 
                 D++L+  + ++tt+a+L++++R+ l+a+   ++ ++++ +y+
  KKY15879.1  82 DVTLNNVSASETTIAQLREAVRKDLEAQgsvADVSKIKVLYN 123
                 67777778999*************965411144455555555 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.41
     DUF2407  29 LkqliRerlpaelasrrLrLIy 50 
                 L+    +rl+ e++ +rLr I+
  KKY15879.1 206 LQGFLEQRLKDETEAARLRGIF 227
                 6667789999********9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.48
# Mc/sec: 1461.63
//
Query:       KKY15880.1  [L=473]
Description: putative transcription initiation factor tfiid subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-22   77.2   1.9    1.6e-20   73.0   0.6    2.3  2  TAFII28   hTAFII28-like protein conserved region
  ------ inclusion threshold ------
       0.36   10.8   5.9        1.7    8.8   5.9    2.2  1  AT_hook   AT hook motif


Domain annotation for each model (and alignments):
>> TAFII28  hTAFII28-like protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.6   1.8e-24   1.6e-20       1      76 [.     173     249 ..     173     268 .. 0.87
   2 ?    3.2   0.0      0.01        93      72      86 .]     416     430 ..     388     430 .. 0.88

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 1.8e-24
     TAFII28   1 lLlenfdeeqlnRYevfrrsklnkaavkklvnsvlsqsvsqnvaivvaglaKvFvgeiveeArevqeeweesg.plq 76 
                 +L+++f+ eq  RY +f+r k++++ +k++vn+++sqsv++  +i++++ aK F gei+e+Ar+vqee++ +   ++
  KKY15880.1 173 ILIRSFTPEQDARYSAFKRVKFKESILKRIVNQIVSQSVTKAPLIAINAYAKFFTGEIIERARDVQEEYALAYdKIL 249
                 699***************************************************************98854433333 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.01
     TAFII28  72 sgplqpehlreayrr 86 
                  g l+p+hlrea rr
  KKY15880.1 416 RGGLLPDHLREALRR 430
                 4689********997 PP

>> AT_hook  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   5.9   0.00019       1.7       1       9 [.      89      97 ..      89     100 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00019
     AT_hook  1 kRkRGRPrK 9 
                kR+RGRPrK
  KKY15880.1 89 KRGRGRPRK 97
                8*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1083  (0.0604049); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.51
# Mc/sec: 2815.69
//
Query:       KKY15881.1  [L=927]
Description: putative beta-galactosidase e [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-80  271.5   0.8    1.7e-80  271.0   0.8    1.2  1  Glyco_hydro_35  Glycosyl hydrolases family 35
    2.7e-61  206.6   0.0    4.4e-61  205.8   0.0    1.4  1  BetaGal_dom2    Beta-galactosidase, domain 2
    3.8e-43  146.7   0.7    1.9e-22   80.0   0.1    2.8  2  BetaGal_dom4_5  Beta-galactosidase jelly roll domain
    7.9e-20   70.2   0.3    3.7e-19   68.1   0.1    2.3  2  BetaGal_dom3    Beta-galactosidase, domain 3


Domain annotation for each model (and alignments):
>> Glyco_hydro_35  Glycosyl hydrolases family 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.0   0.8   3.9e-84   1.7e-80       2     310 ..      14     349 ..      13     353 .. 0.86

  Alignments for each domain:
  == domain 1  score: 271.0 bits;  conditional E-value: 3.9e-84
                     EEETTEEE-EEEEEE-GGGS-.GGGHHHHHHHHHHCT-SEEEEE--HHHH-SCTTB---SGGG-CHHHHHHHHHCT-EEEEEEES---TTBGGGG CS
  Glyco_hydro_35   2 llidgerflllsGeihyfRlp.pelWedvlekvkalGlnaietYveWnlhepkegkydfeGaldlekFlklaqeagLyvilRpGpYicaEwdaGG 95 
                     +++ ger++l+sGe+h+fRlp p lW d+++k+kalG+n +++Y++W+l e ++g++  +G   l++F+++a+eag+y+i+RpGpYi+aE+ aGG
      KKY15881.1  14 VFVRGERVMLYSGEFHPFRLPvPGLWLDIFQKIKALGFNGVSFYTDWGLLEGNPGRVVVDGVWALDEFFDAASEAGIYLIARPGPYINAETAAGG 108
                     5788******************************************************************************************* PP

                     --GGGGGSTTS-TTSS-HHHHHHCHHHHHHHHHHHHHCBGGGTSSEEEEEESSSGG..GT---HHHHHHHHHHHCCCT-SSCBEEECEST..... CS
  Glyco_hydro_35  96 lpaWllkkkeiklRssdeafleavekyleailkkvkkllltnGGpiilvQvEneYg..skavdkaylralakalkeklaekallftadvp..... 183
                     +p W l+  ++++Rs ++++l+a+++y+++i +++++ ++tnGGp+il+Q EneY+    ++d+++ + +++ +++ +++++  + + vp     
      KKY15881.1 109 IPGWVLRI-NGTIRSMSQDYLDATKNYVSTIGQIIARAQITNGGPVILLQPENEYStwPGENDTTFPNDMNRLYMAFVERQFRDTGIVVPyvvnd 202
                     ********.9**********************************************984455555555555555555555555555555500000 PP

                     ...TTCCCTTSSTTT.SCEEEEEECTTS.T..........HHHHHHH.......HHH-TTS--EEEEEESS---BTTS--HHHHHHHCCHHHHHH CS
  Glyco_hydro_35 184 ...seevaekgtlpeedilatvgfgsdaka..........keafkll.......kefspekPlvvsefwtgwfdewgekkaarsaeelaeeverv 258
                         + +a++++  + di+ +++++ + +           +             +++sp++P  + ef++g    wg+ +++ +a  +++e+ rv
      KKY15881.1 203 nknLGYFAPGSGEGAVDIYGIDSYPLRYDCanpyiwptyrW-----PtgwqidhQKYSPTTPFTIGEFQGGSGGGWGGVTEEGCAILVNNEAVRV 292
                     00045555666777778999999999865555566444440.....25666667****************************************9 PP

                     HCCC......SEEEEEECE--B-GCC-B-CCTT.SB--TT-SB-TTS---.HHHHHHH CS
  Glyco_hydro_35 259 lakn.....issvnlYMihGGTnfGflaganflgtsYdydApldEagnlt.pkylelk 310
                     ++kn     ++++n+YM++GGTn+G+l++   + tsYdy+A+++E ++++ +ky+e k
      KKY15881.1 293 VYKNnysfgVKVFNVYMTYGGTNWGNLGYEGGY-TSYDYGAAITEGRHVRrEKYSETK 349
                     99999***9*******************88888.****************9****987 PP

>> BetaGal_dom2  Beta-galactosidase, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.8   0.0   9.8e-65   4.4e-61       3     181 .]     365     542 ..     363     542 .. 0.96

  Alignments for each domain:
  == domain 1  score: 205.8 bits;  conditional E-value: 9.8e-65
                   EE---BSS.SS.BS-TTEEEEEEE-.STT-EEEEEEESSTT---EEEE-EEEEETT.EEEEE-TTSS-EEEESS-EEEEEEEEEETTEEEEEESSEE CS
  BetaGal_dom2   3 ktervgngtsyttsnsaiavtelrnpdtkasFyvvrhadysslestsfklkvnTsaaGnltiPqlggsltLngrdSKilVtDYdvGgktLlYStAEv 99 
                    +++++ng sy +s+sai vt+l + +++++Fy+vrhad++s+++t++kl+v+Ts  Gn+tiPqlgg l++ngrdSKi+VtDYdvGg +L+YStA++
    KKY15881.1 365 IPGNETNG-SY-ASTSAIGVTPLFGAENNTNFYIVRHADFTSTSNTTYKLSVPTS-IGNVTIPQLGGALSINGRDSKIHVTDYDVGGLNLIYSTADI 458
                   5789999*.9*.5******************************************.6**************************************** PP

                   EEEEEE.TTEEEEEEEE-TT-EEEEEEE-SS-..EEEEEST..EEEE-SSEEEEEEE--SS.-EEEEET.T.EEEEEEEHHHHTTE CS
  BetaGal_dom2 100 lTwkkl.ddktvlvlYggegetgefalkgkskgsssvvegs..kikskngalvlnwytqsegrtvvklgng.llvylldrnsAynf 181
                   +Tw+k  + ++vl++Ygg+ et+efa+     g+++++eg   ++k+   a++++w+++++ r+vv++g+g l+v+ll+rn+Ayn+
    KKY15881.1 459 YTWTKGpGVERVLIIYGGAAETHEFAVP-VPLGRPDIIEGAflTTKQVGAAWIVQWKVTPQ-RKVVQFGDGrLEVHLLWRNEAYNY 542
                   *****97889*****************9.799********99888888788**********.******9988*************9 PP

>> BetaGal_dom4_5  Beta-galactosidase jelly roll domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.1   4.2e-26   1.9e-22       1     114 []     658     771 ..     658     771 .. 0.91
   2 !   64.3   0.0   3.2e-21   1.4e-17       2      81 ..     827     909 ..     827     924 .. 0.89

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 4.2e-26
  BetaGal_dom4_5   1 Yderqgwhlpgkttsnnskwplt..vlyssdygfhagvrlyrgtfdldlpsgldvslsltlsggtafrvsvwlNGyqlgsyvphigpqvtF...p 90 
                     Yd++  w+++++ +++n+ +p t  +ly++dygfh+g+++yrg+f   + +gl++s+s ++sgg  f+ s+wlN ++lgs++++  p+++    p
      KKY15881.1 658 YDDS-LWIVCDHLNTTNPLKPSTptSLYATDYGFHSGSLIYRGHF---VSNGLETSFSANISGGYGFGYSIWLNSTFLGSFTGTNAPSFRIqtlP 748
                     99**.****************8899********************...**********************************7766665544449 PP

  BetaGal_dom4_5  91 vpegilnyngenvlavlvdamged 114
                     +p+ + ++n+ ++l++l+d+mg+d
      KKY15881.1 749 FPTPL-TKNSHYILTILIDHMGQD 771
                     99995.5555***********986 PP

  == domain 2  score: 64.3 bits;  conditional E-value: 3.2e-21
  BetaGal_dom4_5   2 derqgwhlpgkttsnnskwpltvlyssdyg.fhagvrlyrgtfdldlpsgldvslsltl....sggtafrvsvwlNGyqlgsyv...p 81 
                     +er+g+hlp+ +++n   wp  v+ + + g ++ gv +y ++fdl++p g+dv+l++++     +++++r+++++NG q+g+y    p
      KKY15881.1 827 AERHGYHLPNAPDTN---WP--VSNPITHGlERDGVGFYATHFDLHIPLGYDVPLNFVFsnttASKSNYRIQLFVNGFQYGKYSaiqP 909
                     69***********55...**..99***********************************998888899**************985541 PP

>> BetaGal_dom3  Beta-galactosidase, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.4   1.8e+03      50      73 ..     421     444 ..     395     446 .. 0.53
   2 !   68.1   0.1   8.3e-23   3.7e-19       1      76 [.     543     624 ..     543     625 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.4
  BetaGal_dom3  50 viapssvktltwNgkklettktky 73 
                   v  p+   +l++Ng++ ++++t+y
    KKY15881.1 421 VTIPQLGGALSINGRDSKIHVTDY 444
                   224555556777777777766665 PP

  == domain 2  score: 68.1 bits;  conditional E-value: 8.3e-23
  BetaGal_dom3   1 WvpdltssPaes.......enessviVkGpYLvRsasisgstLaltGDlnatttlevi.ap.ssvktltwNgkklettktkyGsl 76 
                   W+++l   Pa++       +++ssviV+ +YL+R+a+i +++L+ltGD+n+tt++e+i ap ++++ l++Ng+ ++ttk+ +G++
    KKY15881.1 543 WALEL---PAAEpignytsPSKSSVIVQTGYLLRTAQIVDDELRLTGDINSTTNIEIIsAPtEKISLLKFNGQIIQTTKSPQGRI 624
                   77777...666667778787888************************************99889****************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (927 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 6114.60
//
Query:       KKY15882.1  [L=438]
Description: putative flavin dependent [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-19   70.1   0.0    9.6e-17   60.6   0.0    2.1  2  FMO-like     Flavin-binding monooxygenase-like
    3.9e-05   23.1   0.0    0.00025   20.4   0.0    1.9  1  Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.0   1.1e-20   9.6e-17      77     207 ..      26     166 ..      11     176 .. 0.84
   2 !    7.6   0.0   0.00012       1.1     316     340 ..     216     240 ..     209     330 .. 0.88

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 1.1e-20
    FMO-like  77 ypnflhnsklleylklfakefdllkyiqfkttvcsvkkrpdfstsG.......qwevvtek...egkkesavfdavmvctGhhvnphlplesfpGiekf 165
                  p  ++   +  yl+ ++    ll yiqf t+v+sv   pd s++G       +w+v+t++   ++ +  +++da+++  Gh++ p+lp  +  Gie+f
  KKY15882.1  26 LPLLIPYHMVTSYLRHYS--IPLLPYIQFSTQVVSVVPIPDQSATGksfppltKWQVTTKHlptNKTTTHSLYDALIISNGHYTVPYLP--AIRGIEAF 120
                 566777888999999996..78***********************955555555*****9854345566789*****************..68999999 PP

    FMO-like 166 kGqy....fhsrdykepevfkgkrvlviGlGnsggdiavelsrtae 207
                   +y     hsrd+++ + f++ + ++iG   s+ di  ++s+   
  KKY15882.1 121 SSKYpdniSHSRDFRTEAPFTNCKTVMIGNSASAIDIGQQISHVCS 166
                 887543338*********************************9876 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00012
    FMO-like 316 tveedidvvifatGytfafpflees 340
                  +e++++ v+fatGy ++ pfl+  
  KKY15882.1 216 HIEHGVQKVLFATGYLYTLPFLNAQ 240
                 46889999**************865 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.8e-08   0.00025     121     198 ..      94     178 ..      78     258 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.8e-08
  Pyr_redox_3 121 etyeAkkviiAtGefdkPnklnipGeek.......lvkhyskvkefhkyagqkvvViGgknSavDaAlel..vrkgaeVtvvtrgse 198
                  + y  + +ii+ G +  P+++ i G e        +  h++ ++  +++++ k v iG + Sa+D+  ++  v  g  ++vv  +++
   KKY15882.1  94 SLY--DALIISNGHYTVPYLPAIRGIEAfsskypdNISHSRDFRTEAPFTNCKTVMIGNSASAIDIGQQIshVCSGPLIRVVRTNNP 178
                  333..459*****************99532232223458888888899*****************9765511555888888877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.51
# Mc/sec: 2597.72
//
Query:       KKY15883.1  [L=451]
Description: putative alcohol dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-25   89.2   3.1    3.4e-25   88.0   3.1    1.6  1  ADH_N        Alcohol dehydrogenase GroES-like domain
    5.3e-07   29.7   0.1     0.0015   18.5   0.0    2.8  3  ADH_zinc_N   Zinc-binding dehydrogenase
    0.00071   19.4   0.0     0.0017   18.3   0.0    1.7  1  ADH_N_assoc  Alcohol dehydrogenase GroES-associated


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   3.1   5.7e-29   3.4e-25       2     103 ..      68     190 ..      67     196 .. 0.92

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 5.7e-29
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-...............TTBE CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlC...............eeak 85 
                 +++++kv+ ++iCgsDlh+ +g + +e++ + ilGHE++G+++ vg++v++lk G+rVv++++i+cg+C++Ck++ ++ C               ++a+
  KKY15883.1  68 TDIIVKVTGSTICGSDLHLTHG-AVVEMQKGDILGHEFCGKIDRVGSAVQNLKPGQRVVCSFQIACGSCRYCKQKLSSECektnentienamyggRTAG 165
                 789*******************.8**********************************************************99999999999998888 PP

                 ETTTS.....S-SSSBSEEEEC..G CS
       ADH_N  86 llgvs.....ldGgfaeyvvvp..e 103
                 +lg+s     + Gg++eyv v   e
  KKY15883.1 166 MLGYShftggFAGGQSEYVRVAygE 190
                 8888899999999999**9997444 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.1   6.3e+03      14      38 ..      30      54 ..      23      82 .. 0.70
   2 !   18.5   0.0   2.5e-07    0.0015       1      69 [.     237     311 ..     237     316 .. 0.85
   3 !    8.0   0.0   0.00044       2.6      70     128 ..     333     392 ..     327     394 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.1
                T-EEEEEESSHHHHHHHHHTTESEE CS
  ADH_zinc_N 14 GaeviavdsseeklelakklGadev 38
                G ++  +d+s ek + ++ +G ++v
  KKY15883.1 30 GNNPAWADPSGEKMKALAWFGKNHV 54
                5566667888888888888887776 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 2.5e-07
                 HHHHHHHHHHHHTT-.EEEEEESSHH..HHHHHHH.TTESEEEET.....TTCHHHHHHHHHTTTSSEEEEEESSCSH CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdssee..klelakk.lGadeviny.....keadlverikeltggegvdvvfecvGsg 69 
                 ++G++a  +  + Ga +vi++d+ +   +l+++k+     e+++       e ++ +++k++ + +g+dv++ecv+ g
  KKY15883.1 237 PIGQMAAVMSFMNGAsRVIVIDGGPAawRLDYVKSkTPQIETLDFsklakGE-SITSQLKKMVD-GGPDVALECVA-G 311
                 79*********************998889*****945477777777775323.7*********5.5*********9.5 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.00044
                 HHHHHHHHCEEEEEEEEECSC.TSSEEEEEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHH CS
  ADH_zinc_N  70 atleaalkllkpgGrlvvvGg.gkgeeefdlrnlllkeksilGsllgslreefkealdll 128
                 + l++ ++++k  Gr+ + G+ ++  ++f+++ ++ + ++++G   + +++ + e+l+ +
  KKY15883.1 333 EILNEMITSVKSFGRIGITGVyVGYTNHFNIGAVMERGIRFIGNGQAPVHKYWHELLEKI 392
                 56789999*************9555555***************99999888888888765 PP

>> ADH_N_assoc  Alcohol dehydrogenase GroES-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.8e-07    0.0017       1      22 [.      43      64 ..      43      65 .. 0.97

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.8e-07
  ADH_N_assoc  1 MKAVTyqGpkdVrVeeVPDPkI 22
                 MKA+ + G+++V+V e P P I
   KKY15883.1 43 MKALAWFGKNHVEVVETPKPNI 64
                 ********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2905.50
//
Query:       KKY15884.1  [L=618]
Description: putative glutamyl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.7e-108  360.8   0.1   7.5e-108  360.1   0.1    1.3  1  tRNA-synt_1c    tRNA synthetases class I (E and Q), catalytic
      9e-37  126.6   0.2    1.7e-36  125.7   0.2    1.5  1  tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codo
    0.00077   18.9   0.8     0.0021   17.4   0.8    1.6  1  tRNA-synt_1e    tRNA synthetases class I (C) catalytic domain
  ------ inclusion threshold ------
        2.5    8.5   7.0        0.2   12.0   1.0    2.3  2  TBCA            Tubulin binding cofactor A


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.1   0.1  1.7e-111  7.5e-108       2     313 ..     104     408 ..     103     409 .. 0.98

  Alignments for each domain:
  == domain 1  score: 360.1 bits;  conditional E-value: 1.7e-111
                   -EEEE---SSSS-BHHHHHHHHHHHHHHH.HTT-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---SSEEEEGGGGHHHHHHHHHHHHHTTSEEEE CS
  tRNA-synt_1c   2 VrtRfaPePtGyLHiGhakaallnylfAk.nnnGkfilRieDTdperekeeaeesiledlkwlgikwdekptyqsdrfdelkkyaeeLikkGkAYvc 97 
                   V+tRf+PeP+GyLHiGhakaalln +fA+ +++G+++ R++DT+p+ ekee++++i+edl+++gik+ +k ty+sd+f+el++y+++Lik+G AY +
    KKY15884.1 104 VVTRFPPEPSGYLHIGHAKAALLNDYFAHeQYQGTLLCRFDDTNPTNEKEEFQQAIVEDLALMGIKP-DKTTYTSDYFEELYEYCKRLIKEGNAYAD 199
                   89**********************99997268***********************************.77*************************** PP

                   -STHHHHHHHHCCSSHSS-TTTTS-HHHHHHHHHHHHHTTHSTTTS-EEEESSBTTSS.GGGSSTEEEEEEESGGGSBTTTBTSTSEEE-HHHHHHH CS
  tRNA-synt_1c  98 ectkeeleeereeqeklgskerdrydeenlklfeeemkkgkaegekavvRlkideess.vefrDlvrgriklepqeihdlvivksdiyPtYdfavvi 193
                   ++++e +++er++   ++sk+rd+++e nl+ f eemk g++eg+k ++R+k+   ++  ++rD+v++r++ ++   h ++++ ++ yPtYdf+++i
    KKY15884.1 200 DTEQETMRAERMD--GIASKRRDESVEANLARF-EEMKTGSEEGQKWCIRAKMSVDNPnKAMRDPVIYRCNPTH---HVRTGDTWKMYPTYDFCCPI 290
                   ***********99..99999*************.9********************9999***************...******************** PP

                   HHHHTT-SEEEEEGGGGCCHHHHHHHHHHTT-S.-EEEEEE--EEETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB-HHHHHHHHHHHC CS
  tRNA-synt_1c 194 dDaleeithvlrteefldntpkyiwllealglevppfiheylrlnlekkklSKRklsllvdekqvkewddlreallnflrrlGwtpekerelftree 290
                   +D++e++th+lrt e++d++p+y w+l+al+l+ ++ i+ ++r+n+ +++lSKRkl+ lv++  v +wdd+r+++++++rr+G+t+ + re++ +++
    KKY15884.1 291 VDSMEGVTHALRTIEYRDRNPQYQWFLDALKLR-HVDIWDFARMNFVRTLLSKRKLTKLVNKGLVSGWDDPRFPTIRGIRRRGMTVPALREFMLKQG 386
                   *********************************.*************************************************************** PP

                   CCSSS.EEEEHHHHHHHHHHHHH CS
  tRNA-synt_1c 291 liksfdlnresksleafdrkkLe 313
                    +k+  +n+ +  ++a ++k+++
    KKY15884.1 387 PSKNI-TNMDWTTFWATNKKHID 408
                   *****.**************987 PP

>> tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.7   0.2   3.8e-40   1.7e-36       1     174 []     411     592 ..     411     592 .. 0.83

  Alignments for each domain:
  == domain 1  score: 125.7 bits;  conditional E-value: 3.8e-40
  tRNA-synt_1c_C   1 ApRymaVl..dpvkvtienlpegkeeelevplhpknpelgtrkvpfskeiyiereDakrlkpgeevrLkelynikveevekd....esgevte.. 87 
                     ApR++a+   ++vk+t+++     +   + p+h knp++g++kv++s++i+ie+eDak+++++ee++L++++n+ v++  k+    + g++te  
      KKY15884.1 411 APRHVAINkdRAVKCTVKGAR-VAPLCEDKPKHLKNPDVGQKKVWYSQTIWIEQEDAKSFEDDEEITLMNWGNAIVRSKCKSinplHLGDITEme 504
                     8*******9999******765.4778999********************************************9775544431111569999944 PP

  tRNA-synt_1c_C  88 lkleydgesleearkkkg.iihWvsaeea.veaevrlYdrLfk....eee.dedfllnpdslkvleeglaepalanlkkgdivQfeRiGyfrvd 174
                     l+l+++g ++    k+++ +i+W+sa+++ ++++++ +d L +    ee+ d++++l+p ++ + +e++a++++a++k+ di+QfeR+Gyfr+d
      KKY15884.1 505 LELHLQG-DF----KTTEkKITWLSADQEiIPVTLVDFDFLLSkdklEEDdDWEKFLTPTTEFK-TEAFADCNIADVKEHDIIQFERKGYFRCD 592
                     4444555.66....66666*******6663788********663555444355999******97.8**************************98 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.8   4.7e-07    0.0021      76     152 ..     152     227 ..     110     255 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 4.7e-07
                   HHHHHHHHHHHHHHTT----SB--BGGGGHHHHHHHHHHHHHTTSEEE-TTS-EEE-GGG-TTTTTTTT--HHHHHH CS
  tRNA-synt_1e  76 aekfieefkkdleaLnvlkptleprvsekvdeiielvekliekgyaYavsdgdvyfdvskkeeYgklskqnleelel 152
                    e+f ++  +dl+ +++++ ++++  s++ +e+ e+ ++li++g aYa + +++++  ++++  ++  + ++ e +l
    KKY15884.1 152 KEEFQQAIVEDLALMGIKP-DKTTYTSDYFEELYEYCKRLIKEGNAYADDTEQETMRAERMDGIASKRRDESVEANL 227
                   4678899999999999976.9999************************99887777777666555544444433333 PP

>> TBCA  Tubulin binding cofactor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.6       1.9   8.4e+03      19      40 ..      51      71 ..      40      81 .. 0.52
   2 ?   12.0   1.0   4.4e-05       0.2       8      35 ..     187     220 ..     184     265 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.9
        TBCA 19 ekEleeqearleklkadgdede 40
                 k++++ +a+ ++  a+ +e +
  KKY15884.1 51 AKDAAKAKAKADRALAQTTE-N 71
                34445555555554444433.4 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 4.4e-05
        TBCA   8 vkRlvKEeasYekEleeqearleklka......d 35 
                 +kRl+KE + Y  ++e+++ r e++        d
  KKY15884.1 187 CKRLIKEGNAYADDTEQETMRAERMDGiaskrrD 220
                 8************************875544332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       998  (0.055664); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.51
# Mc/sec: 3619.42
//
Query:       KKY15885.1  [L=300]
Description: putative mitochondrial large ribosomal subunit protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-28   99.1   0.1    5.3e-28   98.2   0.1    1.5  1  Ribosomal_L1  Ribosomal protein L1p/L10e family
      0.007   16.6   0.1        0.2   12.0   0.0    2.3  2  POTRA_1       POTRA domain, FtsQ-type


Domain annotation for each model (and alignments):
>> Ribosomal_L1  Ribosomal protein L1p/L10e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.1   5.9e-32   5.3e-28      13     204 .]      98     278 ..      44     278 .. 0.85

  Alignments for each domain:
  == domain 1  score: 98.2 bits;  conditional E-value: 5.9e-32
                   EEEEEEESSS-TTSGGG--EEEEE-STSTSSCS-EEEEE-HHHHH...HHHHTT..-SEEETCHHHHHHT-HHHHHHTCCH-SEEEEEGGGHHHHHH CS
  Ribosomal_L1  13 veialnlttkkpkkadqrkpgkipLphplgkevkiclitkdpqaeyakeakeagriakviglkklkkkyksfeakrkllkefdlfladdrimpllpk 109
                    e++++l   k+k++   ++ +i+Lph++++++kic i+  ++++ a++a+ ag  a+ +g +++ +        +++  +fd ++a+++ m++++k
    KKY15885.1  98 YEVHIRL---KTKRDGPVIKNQIKLPHSVKTDLKICAICPPDSNA-ARDARLAG--ATLVGEEDIFDVL------KSGKVDFDRVIAHPDSMQKIGK 182
                   6677777...55679999*********************999999.88******..*************......78******************** PP

                   .HCHHHHGGGT-S-ECC..CT.BTS-HHHHHHHHCTTEEEEE-TTTSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTSTTT....SGSEEEEEEEET CS
  Ribosomal_L1 110 .lLGkvfgkrkkmPipvltkgtvkedvkkevekalkstvvvrldkgtclsvkvGklsftaeelaeNieavvkalvekvpkk....wkniksiylktt 201
                     L +++g++++mP+++   gtv e+++  + ++++  +++r ++ ++l ++vG+l+f++e+l +Ni a+++a++++  +      k i +++l++t
    KKY15885.1 183 aGLPRILGPKGLMPNAK--AGTVVENMRGTIGSMMG-GSFYR-ERVGMLRLAVGQLGFNPEQLRDNIRAFIQAIKKDANSMsdqmQKDIHEVVLSST 275
                   6699*************..9**99************.66999.**********************************5544677899*********9 PP

                   TS- CS
  Ribosomal_L1 202 msp 204
                   + p
    KKY15885.1 276 NAP 278
                   965 PP

>> POTRA_1  POTRA domain, FtsQ-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   2.2e-05       0.2       4      41 ..      34      71 ..      32      75 .. 0.86
   2 ?    2.0   0.0      0.03   2.7e+02      32      50 ..     234     253 ..     231     254 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.2e-05
                -EEEEES-SS--HHHHHHHHHTTSTT-GGGS-HHHHHH CS
     POTRA_1  4 kqvevsGnkhlsseeiikalgiekgtslfsldleaieq 41
                ++v+v+G k+l++ +++k++ ++k++++   +l+++++
  KKY15885.1 34 SSVHVRGAKNLTATQVKKEATKKKRKKFPNYKLQNLKD 71
                68**********************99999776666665 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.03
                 GGS-HHHHHHHHHH.-TTEE CS
     POTRA_1  32 fsldleaieqrlek.lpwvk 50 
                 +++++e++++++++ +  +k
  KKY15885.1 234 LGFNPEQLRDNIRAfIQAIK 253
                 689*********99777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       956  (0.0533214); expected 358.6 (0.02)
Passed bias filter:                      726  (0.0404931); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 1948.68
//
Query:       KKY15886.1  [L=299]
Description: hypothetical protein UCRPC4_g06072 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-28   98.8   1.4      3e-28   98.6   0.0    1.8  3  COG2         COG (conserved oligomeric Golgi) complex compone
      3e-06   27.2   0.2    1.2e-05   25.3   0.0    2.3  3  Vps51        Vps51/Vps67
  ------ inclusion threshold ------
      0.089   12.9   0.0        0.2   11.8   0.0    1.6  1  DUF2120      Uncharacterized protein conserved in archaea (DU
       0.43    9.9   1.6       0.47    9.8   0.0    1.9  3  Helo_like_N  Fungal N-terminal domain of STAND proteins


Domain annotation for each model (and alignments):
>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.6   0.0   6.6e-32     3e-28       4     132 ..      31     161 ..      28     162 .. 0.96
   2 ?   -3.7   0.0       2.6   1.2e+04      28      39 ..     217     228 ..     215     234 .. 0.68
   3 ?   -2.5   0.1       1.1   5.1e+03      27      43 ..     250     266 ..     244     288 .. 0.60

  Alignments for each domain:
  == domain 1  score: 98.6 bits;  conditional E-value: 6.6e-32
        COG2   4 deheFgvp.dFdpdqFvse.lrhgvpLeslrrdLeaylkllekellelvnedyadFvslSghLvglqeeleevesplaaarkkvesvreklsereeeve 100
                 ++++F ++ dF+p  F+ +  +++++Le+lr++L++ ++ l++ell+lvne+y dF+ l+++L+g +e++ee+++ l+ ++++ve++r+ ++ r++e+ 
  KKY15886.1  31 SRDSFAKEgDFSPSDFLTSlSSRHQTLEDLREELRSLSSALNNELLDLVNENYSDFLGLGKQLKGGDERVEEIRVGLLGFQREVEKLRAGIDVRRKEMA 129
                 6677776449*********9******************************************************************************* PP

        COG2 101 skleeakeleekrellklllkldevvekleal 132
                 + +ee++++ +  +l ++ll+++e++  le+ 
  KKY15886.1 130 GAIEEKRHIGRDIALGRRLLEVEERLGDLEDR 161
                 *****************************986 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.6
        COG2  28 LeslrrdLeayl 39 
                 L+ lrr+ e+y+
  KKY15886.1 217 LKRLRRNVENYQ 228
                 667777777775 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.1
        COG2  27 pLeslrrdLeaylklle 43 
                  Le++r+ Le  l +l+
  KKY15886.1 250 RLEKIRSTLEVDLRSLQ 266
                 34444444444443333 PP

>> Vps51  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   2.7e-09   1.2e-05       3      61 ..      38      94 ..      36     121 .. 0.87
   2 ?   -3.4   0.0       2.4   1.1e+04      52      67 ..     147     162 ..     146     170 .. 0.64
   3 ?   -2.9   0.0       1.7   7.5e+03      57      69 ..     214     226 ..     213     236 .. 0.64

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 2.7e-09
       Vps51  3 spdfdaeayvrellakstlkellkveasllseiraldselkalVydnYskLisasdtIr 61
                ++df++++++++l +++  ++l  ++++l+s   al++el  lV +nYs+++   ++++
  KKY15886.1 38 EGDFSPSDFLTSLSSRH--QTLEDLREELRSLSSALNNELLDLVNENYSDFLGLGKQLK 94
                689********654444..6999*****************************9888776 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.4
       Vps51  52 kLisasdtIrkmksem 67 
                 +L+++ + + ++++ +
  KKY15886.1 147 RLLEVEERLGDLEDRL 162
                 6777777777777664 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.7
       Vps51  57 sdtIrkmksemdk 69 
                 + +++++++++++
  KKY15886.1 214 TPELKRLRRNVEN 226
                 5667777777644 PP

>> DUF2120  Uncharacterized protein conserved in archaea (DUF2120)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.5e-05       0.2      32     101 ..      51     118 ..      46     131 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.5e-05
     DUF2120  32 srkkeeleeleskleellekldaeevdleseeakkliekldesireveeieeevdafglerlkeslEalg 101
                 s  +++le+l+++l +l + l++e +dl++e+ ++++  l+++++   e  ee+  +gl  ++++ E+l 
  KKY15886.1  51 SSRHQTLEDLREELRSLSSALNNELLDLVNENYSDFLG-LGKQLKGGDERVEEI-RVGLLGFQREVEKLR 118
                 555666******************************97.788888877777554.567777777777764 PP

>> Helo_like_N  Fungal N-terminal domain of STAND proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0001      0.47      26      75 ..      45      94 ..      34     129 .. 0.76
   2 ?   -3.9   0.0       1.6   7.1e+03     162     173 ..     151     162 ..     144     174 .. 0.53
   3 ?   -2.8   0.1      0.74   3.3e+03     177     177 ..     266     266 ..     242     290 .. 0.44

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0001
  Helo_like_N 26 etvksfrsrdktvreLkeeleaLeevLes.LeevavaeeeselalLklpll 75
                 + + s+ sr++t+ +L+eel++L++ L++ L +  v+e+ s++  L + l+
   KKY15886.1 45 DFLTSLSSRHQTLEDLREELRSLSSALNNeLLD-LVNENYSDFLGLGKQLK 94
                 5678899********************753777.33566677666666555 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.6
  Helo_like_N 162 LeehLedidekl 173
                   ee+L d++++l
   KKY15886.1 151 VEERLGDLEDRL 162
                  344444444444 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.74
  Helo_like_N 177 t 177
                  +
   KKY15886.1 266 Q 266
                  1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2194.21
//
Query:       KKY15887.1  [L=338]
Description: putative alphaglucosidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2268.46
//
Query:       KKY15888.1  [L=542]
Description: putative amidohydrolase 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-22   79.4   0.0    8.4e-22   77.9   0.0    1.7  1  Amidohydro_1  Amidohydrolase family
    9.6e-18   64.9   0.1    2.3e-08   34.0   0.0    2.5  3  Amidohydro_3  Amidohydrolase family
  ------ inclusion threshold ------
      0.067   13.5   0.1       0.17   12.2   0.1    1.7  1  Urease_alpha  Urease alpha-subunit, N-terminal domain


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.0   1.4e-25   8.4e-22       1     344 []      54     480 ..      54     480 .. 0.72

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 1.4e-25
                   EEEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH...........HHHHHHHHHHTSSSEEEEEEESSEG CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattst...........giealleaaeelplglrilggkvsl 86 
                   +v+PG++D+HvHl q+           +p      ++ +g++ al +Gtttv+++     t           + + + +++ ++  g++i+++    
    KKY15888.1  54 YVTPGGVDSHVHLAQDN----------AP---TGDGFLTGTRSALAGGTTTVLAFASQKRTdeslfpiveeyHRRSCGQSYVDY--GFHIILS---- 131
                   69***********9773..........33...458**********************776688766665555555555555555..7777766.... PP

                   GSGCCCSHHHHHHHHHHHHHHHHHHCTTTCEE.EEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETTTTSTCC. CS
  Amidohydro_1  87 drgsaetskasreklkagaaetikgkadgvvk.valapheapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafgetiehgthlevaes. 181
                       +e  +++   l++ +         g+++    + + +  +sd  l +++ + ++ ++  +iHa +++ +   +++  ++++  +++   a   
    KKY15888.1 132 --NPTEKILNELPLLIEKE---------GITSvKLYMTYVPLKLSDGDLLDVMMKTRELGMTTMIHAENSDMIDMITKRLLANSHATPGYHAIARPq 217
                   ..77777777777776664.........77774555789999*************************777777667777777666555555444445 PP

                   ............HHTTTHCCEEEHCTCEEEHH...HHHHHHHHHHHHCEEHHHHHHHH....................................... CS
  Amidohydro_1 182 ............lglldeiklilahgvhltpt...eaellkerlkeagvahcpfsnsi....................................... 224
                               l      +l+   + +++++    ++ +++                                                       
    KKY15888.1 218 laeteatyraisL-----STLTSTPILLVHMSsppAINHVRKS----QK--------Hllpihaetcphylyllssslgptaldpdkhshcshddlw 297
                   5555555443331.....2222222222221112212222222....11........1223333334444444444447777777777777777788 PP

                   .............SEHHHHHHHHHHHHTSCEEEEEECT....................TSSCCGGHHHH..........HHHHHHHHHHCCTT.... CS
  Amidohydro_1 225 .............lrsgrealrkaldeGvkvglgtDga....................asgnslnllee..........lrlalklqrgllye.... 274
                                + +++  l+k l+++++ ++++D+a                    +s  +++++            l + + ++     +    
    KKY15888.1 298 sgarnvcapplrhSPTDLTSLWKSLNNNTINVVSSDHApstfnhpdgklkpltlsstsSSPPTFTMIPNglpgletrlpLLFSAATTP----Sltsp 390
                   9999999999999**************************************9997766444444777777777776644333332333....13345 PP

                   ..TTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCT....................CGGGTTTCTSEEEEEEEETTEEE CS
  Amidohydro_1 275 ..deegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldi....................laafvglkkdgnvkkvivkGklv 344
                     ++++ +sl ++++++++ +A  +gl+d++Gsi++G dAD+v++   +                    +++f+gl   ++++ v ++G++v
    KKY15888.1 391 slNSQASISLPRFVALTSTTPATLYGLSDRKGSITPGLDADIVIWY--PanhtnakttiqnqnlhhsidYTPFEGLQVGNWPRYVLLRGQVV 480
                   7999*****************************************5..44455778889999***************************997 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.9e-10   1.1e-06       1      56 [.      46     100 ..      46     118 .. 0.82
   2 ?   -3.8   0.0       1.1   6.4e+03     261     298 ..     165     202 ..     162     227 .. 0.72
   3 !   34.0   0.0   3.9e-12   2.3e-08     407     472 ..     397     480 ..     386     481 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.9e-10
  Amidohydro_3   1 eviDakGrlvlPGFvDsHtHlagggvnl.rllrlpdarvtslegvltavrdqagttp 56 
                   ++iDa+G++v+PG+vDsH Hla  ++    ++  +   +++l+g +t+v + a +++
    KKY15888.1  46 KIIDADGAYVTPGGVDSHVHLAQDNAPTgDGFLTGT--RSALAGGTTTVLAFASQKR 100
                   68********************99988877777777..7777777777777776654 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.1
  Amidohydro_3 261 edealaelvaaadergldvaihaigdaavddvldafea 298
                   +d++l +++ + +e g+   iha   + +d++ + + a
    KKY15888.1 165 SDGDLLDVMMKTRELGMTTMIHAENSDMIDMITKRLLA 202
                   56667788888888888888888888888877666544 PP

  == domain 3  score: 34.0 bits;  conditional E-value: 3.9e-12
  Amidohydro_3 407 elsleealalyTrgpAkalgledrkGtLevGadADlvvld.....adpldvdppelaear.............vrltvvdGrvv 472
                    +sl   +al++++pA+++gl+drkG++ +G dAD+v++      ++  +++ ++l++               +r+++ +G+vv
    KKY15888.1 397 SISLPRFVALTSTTPATLYGLSDRKGSITPGLDADIVIWYpanhtNAKTTIQNQNLHHSIdytpfeglqvgnwPRYVLLRGQVV 480
                   5789999********************************9666665666666666666559*********************98 PP

>> Urease_alpha  Urease alpha-subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.9e-05      0.17      66      98 ..       3      37 ..       1      48 [. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.9e-05
  Urease_alpha 66 lDlvitnavilDatgivka..digikdgrivaiGk 98
                   Dl+i na+i+ a+ i+ a   ig+kdg+i+ i+ 
    KKY15888.1  3 FDLIIKNATIVTAAEILPAglSIGVKDGKISCIAS 37
                  69**************9985569********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 3287.98
//
Query:       KKY15889.1  [L=272]
Description: putative carbon-nitrogen hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-12   46.1   0.1    1.5e-11   44.6   0.1    1.6  1  Asp_Glu_race  Asp/Glu/Hydantoin racemase
    1.7e-05   24.5   0.6     0.0051   16.5   0.1    2.2  2  Amdase        Arylmalonate decarboxylase


Domain annotation for each model (and alignments):
>> Asp_Glu_race  Asp/Glu/Hydantoin racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.1   1.6e-15   1.5e-11       1     214 [.      22     232 ..      22     241 .. 0.66

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 1.6e-15
                   EEECSCCCCHHHHHHHHHHBTTSSGGGS..EEEEE-CCS-.TCHHHHHCH.T..THHHHHHHHHHHHC....TTESEEEE--CHHHHHHHHHHHH-S CS
  Asp_Glu_race   1 IGgmgpeatlsvlrklveatpaesdqehlplivlndsaip.drteaieeesgddpvlklleaakkLek....agadaiviaCnTahavadelqkkik 92 
                   I +++p++t s+++++++++ ++  +   ++ + + +a p +++ aie +  d ++l+ ++++++L++       dai++aC++ ha++++l+++++
    KKY15889.1  22 ILVVNPNSTKSMTEACIRMAVNQLPS---HVTLTGFTA-PaPSPSAIEGS-LD-AILSSEACIRALASdpktKTFDAILVACFSKHALIEALREELS 112
                   568899*********99999999944...244444444.32588888544.44.46677777777765333389*********************** PP

                   SEEEECHHHHHHHHHHHSS-EEEEEE-HHHHHCTHHHHHHHHHGT.EEE....T-CCCHHCCHCHHHH.TT-TTSH..HHHHHHHHHH...HHH.TT CS
  Asp_Glu_race  93 iPvlgiveataealkatgvkkvglLgTrgtlksglyqkeleanqgievvvpseelqssvnqaiyeelk.aGevtee..arrailklle...rla.er 182
                   +Pv+gi+ea++ +++    +++g+++ +g+ ++ l  ++++a +g++         s        e+   G ++ e  +r+++l  ++   r+  ++
    KKY15889.1 113 VPVIGIMEAALYSARM-LGGRFGIVA-TGERSKWLQSDAVRA-YGLDG-------YSVGS-----EATgLGVLELEtkSRSEVLGRVAesaRVLvDQ 194
                   ***********99955.99*******.699999999999999.5*933.......22222.....2233444444422222222222233233449* PP

                   T-SEEEE-S...TTHHHHHHHHHHCC-TT....SEEEE CS
  Asp_Glu_race 183 gadaviLGC...Telplllekaealekek...svpvid 214
                   gad v+LGC   T++  + ++a a+++++   +v+vid
    KKY15889.1 195 GADCVLLGCagmTDMVEACKEAVAHRDDYgnpKVNVID 232
                   *********44444444444444455444555555555 PP

>> Amdase  Arylmalonate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0007       6.3     152     200 ..      77     126 ..      68     139 .. 0.78
   2 !   16.5   0.1   5.7e-07    0.0051      14      53 ..     162     201 ..     147     207 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0007
      Amdase 152 gkkava...aapeadallisCGGLrtldvvreledelglpvvssalAGlwda 200
                 + +a+a   ++++ da+l++C   +  +++++l++el +pv+   +A l+ a
  KKY15889.1  77 CIRALAsdpKTKTFDAILVAC--FSKHALIEALREELSVPVIGIMEAALYSA 126
                 556665222345679******..6777889************9999988765 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 5.7e-07
      Amdase  14 FeAeGLglkelskegydevidrvveaArelaerGaqavsl 53 
                  eA+GLg+ el++++  ev+ rv+e Ar l ++Ga+ v l
  KKY15889.1 162 SEATGLGVLELETKSRSEVLGRVAESARVLVDQGADCVLL 201
                 579*********************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.50
# Mc/sec: 1642.17
//
Query:       KKY15890.1  [L=514]
Description: putative cytochrome p450 4a10 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-45  153.9   0.0    1.8e-44  152.3   0.0    1.6  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.3   0.0     1e-48   1.8e-44      23     431 ..      66     470 ..      44     471 .. 0.82

  Alignments for each domain:
  == domain 1  score: 152.3 bits;  conditional E-value: 1e-48
                 HHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTT.THHHHHHH CS
        p450  23 hevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgkl.sleelvee 120
                  + +++l+++ygp++r+ ++      + +  a  ++++++g +++ + +++ +++    + + +++ ++ + ++  R   +  l+s+ +l +  + + +
  KKY15890.1  66 ASTVQSLHQQYGPVVRIGPNDV---DIADGAALNAIYVDRGGFMKPK-YYSNFDI----DGHPSIFSSTDPSHRASRAKAVLPLFSSASLrAGSDKIYQ 156
                 45589***********988775...55566699*******9666665.6666665....788888888888888888666665555558889******* PP

                 HHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHH..HHHHHHH CS
        p450 121 eaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkllrklk..eavkklk 217
                 ++++l+++lr+++ + + ++i +l   +a+d++++ lF+ +++ l+++ ++++  +v++ +    ++    + +f+ l+ l+ kl+ +++  e  +k++
  KKY15890.1 157 CVDRLITRLREESAAGEPVNILNLTRSFATDAVTTYLFQYSYGGLQEK-SLSAAGMVDTFVAGNRFFYLPNWVFFR-LDSLIAKLFPDHEaeESLDKVD 253
                 *******************************************66655.669999999996655444444444444.6777778777665115567777 PP

                 HHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHC.CTTTT-HH CS
        p450 218 dlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevl.gdkrepty 315
                  ++++++   +e+  s+   + +  + ll++        k+s +e +a++ +l+faG+d + + l+ ++++L + Pe+ +++ +E+++   g+    + 
  KKY15890.1 254 RFIKEVVSHTEEENGSQ--LKGNYPSRLLDNA-------KVSAHETVAQCKDLMFAGTDSSGMNLATIMFHLSRSPEILSQVEKELNSNKyGSI--TDP 341
                 78888888888887777..6777788888884.......9**********************************************99997775..455 PP

                 HHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS...........CEEETT...EEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCT CS
        p450 316 ddlqklpyldavikEtLRlhpvvplllpRevtk...........dvvirg...ylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksf 400
                  +lq+lpyl+ +++E+LR + + p++  R+v+             ++ +    +++p Gt+v+  +  lh +p vf  P +FdpeR+ ++k+ ++    
  KKY15890.1 342 IELQSLPYLRGIVRESLRVSLANPSRFGRVVPPggwtfipsgtsQYSRPSdteVFLPPGTIVSCTPLELHFNPRVFVSPYKFDPERWTEDKE-TEEMRR 439
                 68****************************988776666655554444445889*************************************9.679*** PP

                 T--TTEEGGGS-TTHHHHHHHHHHHHHHHHH CS
        p450 401 aflPFGaGpRnCiGerlArmelklflatlLq 431
                  f+PFG G R+Ci ++lA++el+ + a +++
  KKY15890.1 440 DFIPFGLGTRQCIARNLATVELFAAAAGMIR 470
                 ***********************99988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.52
# Mc/sec: 2968.28
//
Query:       KKY15891.1  [L=365]
Description: putative n-carbamoyl-d-amino acid hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-42  143.6   0.0    1.2e-41  142.8   0.0    1.3  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.8   0.0   6.6e-46   1.2e-41       2     258 ..       7     332 ..       6     334 .. 0.87

  Alignments for each domain:
  == domain 1  score: 142.8 bits;  conditional E-value: 6.6e-46
                   EEEEEBB-..STTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTBSSSHHHHHHHHB.............HSSSHHHHHHHHHHHHHTEEEEEEEE CS
  CN_hydrolase   2 vAvvQlpq..kaadleanlqklleliaeAarkgadLivlPElfitgykeeahfleaAe.............aglgetlallaalarkngiavvigli 83 
                   vA +Q+    +++ +++ l+++ +l++eA +kga+L+v PE++ t + +++h +++                 l+++++ l + ar++gi +++g++
    KKY15891.1   7 VAGAQMGAvdTTTPRTEVLDRMIKLLSEAQSKGAKLVVYPECAFTTF-FPRHLITNKDdlekwfehdvngdPTLAPNMKPLFDKAREYGIDISVGYA 102
                   56667776777788999****************************99.666666666666666666669998899********************** PP

                   EEEC...CTTEEEEEEEEEEEET.TSEEEEEEE-SS--....E.ECTTSCECCGHHTSCS............................-SS.S-EEE CS
  CN_hydrolase  84 erel...tngklqayntavlldl.dgklvgkyrKlhLf....p.geprpptaverelfep............................gdg.ipvfd 142
                   e ++   ++ ++  yntav++++  gk+v+kyrK+hL     p   p+  +++e+ +f p                            gd+ ip  +
    KKY15891.1 103 EHDTsrpEEEHV-HYNTAVYFSAaAGKIVSKYRKVHLPgtvePyATPGATQQLEKRYFRPgnlgfeafrapgllpdaakkpqangtvnGDSpIPSHA 198
                   **99***66666.599999998626899***********9998899999999***********************9999999999999887655555 PP

                   ETTE..EEEEEEGGGGGSHHHHHHHHHTT-SEEEE...................BH.GCCCTCHHHHHHHHHHHHHHHHHHTSEEEEEEBEEEHCET CS
  CN_hydrolase 143 tpvg..kiGaaiCyeigfpellralalkgaeilvn...................lserapvpksmgppqwellgraralengcfviaanqvggyeql 218
                      g  ++G++iC ++++ e++r ++l+g+e+++                    +    +   + +  + +l++++++  n cf ia++++g+  ++
    KKY15891.1 199 YGTGdpIVGTLICNDRRWAEAWRCYGLQGVEVVLCgynttgwapdllgtnkkikT---KEDAYNEALSHNQLSMQHGSYTNACFSIAVARCGM-DDG 291
                   555588**************************999999********998776542...2333355667888**********************.*** PP

                   TEEEE--EEEE-TTS-EEEEC.CSSSTEEEEEEEEHHHHHH CS
  CN_hydrolase 219 ilwpvghSaiidpdGrilagl.geeeegvliaeidladvra 258
                   ++  +g+S+i+dpdG ++a++ + +++++++aeidl+d+++
    KKY15891.1 292 KYPLIGGSCIVDPDGDVIAKAkTMDQDELIVAEIDLDDCKR 332
                   *********************8899999*********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 2202.36
//
Query:       KKY15892.1  [L=129]
Description: putative pq loop repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-08   33.4   0.4    5.7e-08   32.4   0.4    1.5  1  PQ-loop   PQ loop repeat


Domain annotation for each model (and alignments):
>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.4   3.2e-12   5.7e-08      20      58 ..      27      65 ..      20      68 .. 0.93

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 3.2e-12
     PQ-loop 20 QiikNykrkSteGlSilflllwllGdilsllylilngfp 58
                Qi+ ++k+kS  G+S++  l+ l+++il+l+y++  +++
  KKY15892.1 27 QIYSIHKNKSSAGFSLDIPLIMLVASILKLFYWFGAYYS 65
                **********************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 924.46
//
Query:       KKY15893.1  [L=248]
Description: putative dienelactone hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-09   35.8   0.1      8e-09   35.4   0.1    1.2  1  DLH       Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.1   4.5e-13     8e-09       7     216 ..      34     247 ..      28     248 .] 0.68

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 4.5e-13
         DLH   7 tpknakkpvvvviqeifGvn...dnikdiserla.eeGYv.alaPdlYarqa.........ldpndeaeaaraldelvskvaeekvlddlkaavaylks 91 
                 +   a  ++v+ i +ifG      + +di + +  e+G v +++Pd +++            +++  ae+a+ ++ +++ +  ++v + +   v ++ +
  KKY15893.1  34 GASTA-SKAVIFIYDIFGFApqsLQGADILAGVEsEKGDVqVFIPDYLKGYHaqgawfapdAAAELVAEKAKFFSSIGNFK--DHVEQTR-TLVSAISE 128
                 44455.79999999999999544233345444433568654899**87776677777544433333344444444444333..3333333.33444333 PP

         DLH  92 vpevstkkvgvvGfCmGGalalllaaevpevdaavafYGlspekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFa 190
                  ++ s+k +g++G C+G++ + l++  +  ++a +  +++++e   ++a +i  pi +l+ +     pade++k+ e+l   + +  ++ +++  H+ +
  KKY15893.1 129 -KYPSVKSFGAIGLCWGAKTVSLVSGPGTPLKAGAEVHPSRVE--AKDALDITIPICILASNG---EPADEIQKFFENL---KTEKYVETFADQHHGWM 218
                 .336899********************977*********6655..566667777777765543...3677777777777...5666799********** PP

         DLH 191 ndsre...syneeaaedawervlelfkqv 216
                  ++++   + n+e  e+++  v+++f+++
  KKY15893.1 219 GARANlkdERNKEEYERGYGIVIDFFHKH 247
                 999888889999999999*99***99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1718.68
//
Query:       KKY15894.1  [L=506]
Description: putative benzoate 4-monooxygenase cytochrome p450 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-47  161.8   0.0    3.5e-47  161.2   0.0    1.2  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.2   0.0     2e-51   3.5e-47      20     446 ..      48     468 ..      33     476 .. 0.85

  Alignments for each domain:
  == domain 1  score: 161.2 bits;  conditional E-value: 2e-51
                 CCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTT.THHHH CS
        p450  20 eelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgkl.sleel 117
                 +++   l +l++k gp+ r  + + ++  l  ++av++v  k  +++  +++   +     +  +  ++  + ++ ++ Rr+l+ +l +  k+ +l  +
  KKY15894.1  48 GNITLDLPRLHEKLGPLIRTGPREVSFYSLDIYDAVHKVGSKYVKDPRTYGE---FV----QGGHPALFSITDNEEHSRRRRLMGQLYNRTKMdNLHVM 139
                 666777889**********999999999999999999999999655555422...22....234455555556899999999******999999***** PP

                 HHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHH CS
        p450 118 veeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkllrklkeavkkl 216
                 + +e+e++v++l+ ka+ +  l++         d+i++  Fga+++ + + ++ + +++v+++    +++++ +l +fp l  l+++l++ + ++   +
  KKY15894.1 140 MLDEVENFVRALKGKAQRR--LELIAACRALEADIISRFSFGAPIGAVVSFSRDKPLEMVAAN--DEKAKWMPVLVTFPRLVALWERLEQAVFNVIGWQ 234
                 *******************..*************************99999988999999998..56689999******66678888888888886666 PP

                 HHHHHHHHHHHHHCHCHC............SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH CS
        p450 217 kdlldklieerretldsa............kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEi 303
                  +++ ++      ++  +            ++   ++++ l+++         l+ +    ++ e ++ G+dTts+tl+ +L  La+nP +q++lr+E+
  KKY15894.1 235 TNFTAAMKD---WEFWASnglsialspkleNSVSPSLIQTLIKS--------GLHPQTALCEARENIGPGTDTTSATLAHILWALAHNPLYQNALRQEL 322
                 666655543...33333323457787666544455555555555........7*********************************************8 PP

                 HHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS.CEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS.....CTE CS
        p450 304 devlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtk.dvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg.....nsk 396
                  e      + +++ l+++p l+a++kE  R   ++   lpR v+   v+++g +ip Gt++  ++ +++rd++ fpnP  ++p R+l  +g     ++ 
  KKY15894.1 323 AELKF---PTDMSSLESIPKLKACVKEGVRWAGAAAAMLPRIVPAeGVTLEGKFIPGGTTITSSPIWYLRDKTAFPNPSYYNPYRWLTVDGtaiseDQP 418
                 88753...457********************************9979**********************************************999667 PP

                 SSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEE CS
        p450 397 rksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppi 446
                   + +++PF+ Gp +C G ++ + el l ++++L++F+++l++++ p p+
  KKY15894.1 419 LRDKYYIPFSKGPNICMGAHFSYYELYLSVSQVLKHFRITLPSGSHPSPS 468
                 899**************************************998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.53
# Mc/sec: 2863.54
//
Query:       KKY15895.1  [L=481]
Description: putative amino acid permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-27   97.1  50.9    1.4e-27   96.7  50.9    1.0  1  AA_permease_2  Amino acid permease
    1.6e-13   50.1  39.9    2.2e-13   49.7  39.9    1.1  1  AA_permease    Amino acid permease
  ------ inclusion threshold ------
       0.14   12.7   2.4       0.25   11.8   0.3    2.2  2  Avidin         Avidin family


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7  50.9   2.3e-31   1.4e-27      14     371 ..      65     441 ..      51     451 .. 0.82

  Alignments for each domain:
  == domain 1  score: 96.7 bits;  conditional E-value: 2.3e-31
  AA_permease_2  14 vigsgifvknlaasggp.alilwvwiavligslavllvyaElssalprsgGiyvytkaa....fgkkvaflsawfnwfayvpvlasilsvaasyll 104
                    + g+ +++++++a+gg+ a + +++i+++ + ++ ++v+aE++s lp  g iy ++++a    +g++++f++aw+++ a+  ++as + +a++y+l
     KKY15895.1  65 IGGVRVTFSTGIAAGGTiAYWPSFLITCVFT-FITAAVIAEVCSSLPLAGSIYLWAAEAggpkYGRLFGFIVAWWSTTAWTTFCASNTQAAVNYML 159
                    3334444554455555515888888888888.79999*****655**************8888899999**************************7 PP

  AA_permease_2 105 nalgp...dlqgn......twltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.....stetdtffpng 186
                    + +     d+  +      +  + ++  + l+l a+ n++ ++  ++i     ++++l +l+ +i+l++ t +  gf  +     +    + +++g
     KKY15895.1 160 SEIVVfnlDFPSDassvkfRAVQWICTEIMLALAAIGNLLPPRYFRWIFYASSVFVVLDFLLNMIWLPIGTSQTYGFRTAdeaflT----SYNGTG 251
                    7652222344333677766666667777778888888999*****************999***********988666644322222....344446 PP

  AA_permease_2 187 wpgv...llgllivlwsfdGfesaanvseevkk.k.dvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivv 277
                     p      l++l+++  ++Gf+++ +v+ee k+    + +++f++ +++++ ++   i+fl++vpd     + +  +++ ++++   g+ ++++++
     KKY15895.1 252 APAAwnwCLSFLATAGILIGFDASGHVAEETKNaSlSAARGLFWSTVTSGIGGFICVILFLFCVPDADTLFSFGGAQPFVPLYAVILGRGGHVFMN 347
                    665422345788899999***************64689****************************666554455899****************** PP

  AA_permease_2 278 ilialsllgaintavigssrvlealardgvlP..rffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigali 371
                    ++ + sl+++   av+++sr+++a+ardgvlP   + a+v+ +g p +a+i+++ v+ ++++ +l  s+ a++ l+s++ +++   y ++ii a++
     KKY15895.1 348 VVNIASLWFNTAIAVLAASRLVFAVARDGVLPfsGWVAQVS-NGQPKNAVIVVWAVAAVITCSILP-SGVAFTSLVSAAGVPSAAAYDAPIIMAIV 441
                    *********************************88888887.679************887766654.49***********************9997 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7  39.9   3.6e-17   2.2e-13      17     383 ..      70     452 ..      60     456 .. 0.75

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 3.6e-17
  AA_permease  17 vglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGln..........ylfswitvlaleltaasiliqfw 104
                  v  +  ++++G ++ + ++l+++v++f+++  ++e+ +  p +g++y +a++  gp+ G   G++          ++  + t++a+ ++ ++i++ ++
   KKY15895.1  70 VTFSTGIAAGGTIAYWPSFLITCVFTFITAAVIAEVCSSLPLAGSIYLWAAEAGGPKYGRLFGFIvawwsttawtTFCASNTQAAVNYMLSEIVVFNL 167
                  455677889999999******************************************99999999544455555444444555555555555555555 PP

  AA_permease 105 elvtdlpkawvt...........gavflvvlliinlvgvkv.ygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgf 190
                   +                       + + ++l++  +g+ +  + + +i+    +  +++f++  i+l +g  ++ g    f +++ +    +l+++ 
   KKY15895.1 168 DF---------PsdassvkfravQWICTEIMLALAAIGNLLpPRYFRWIFYASSVFVVLDFLLNMIWLPIGTSQTYG----FRTADEA----FLTSY- 247
                  44.........04444556666655666688888888776526889999**********************999999....4444444....34444. PP

  AA_permease 191 akeeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlslllig...llvprndlgllndsasaaspfvifikesgv 285
                   + +  a  n++  f + +  + G+ + + +a+E+k+ + s  +     ++ ++ + ++++++++   ++vp+ d +l++     a pfv        
   KKY15895.1 248 NGTGAPAAWNWCLSFLATAGILIGFDASGHVAEETKNASLSAAR---GLFWSTVTSGIGGFICVIlflFCVPDAD-TLFSFGG--AQPFVPLYAVILG 339
                  44445567788888888888888999999999999998887555...5677777777766655541114555555.6666333..3479988888889 PP

  AA_permease 286 svlaplinaviltaalssansslysasRvlyslakdglaP..kvlkkvskrgvPlraillsmiisllal............llaslnlaapivfn..f 367
                  ++  +++n+v ++++++    ++ +asR++++ a+dg++P   +++ vs +g P +a+++++++++++             l++++ ++ + +++  +
   KKY15895.1 340 RGGHVFMNVVNIASLWFNTAIAVLAASRLVFAVARDGVLPfsGWVAQVS-NGQPKNAVIVVWAVAAVITcsilpsgvaftsLVSAAGVPSAAAYDapI 436
                  9****************99999******************998888887.89**************99978888888877755555555455554446 PP

  AA_permease 368 llaisaliglivwlli 383
                  ++ai+++ gli w +i
   KKY15895.1 437 IMAIVTIFGLISWYVI 452
                  7788888888887766 PP

>> Avidin  Avidin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   4.2e-05      0.25      54      83 ..     126     152 ..      98     160 .. 0.79
   2 ?   -0.2   0.1      0.22   1.3e+03      58      93 ..     367     402 ..     353     407 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.2e-05
                 SSSTEEEEEEEETTSSEEEEEEEEEEEETT CS
      Avidin  54 etqptfgFtVnwnnsdSttawtGqcfvtdg 83 
                 + +++fgF+V+w +   ttawt  c  +++
  KKY15895.1 126 KYGRLFGFIVAWWS---TTAWTTFCASNTQ 152
                 67899*******97...9****99987755 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.22
                 EEEEEEEETTSSEEEEEEEEEEEETTEEEEEEEEEE CS
      Avidin  58 tfgFtVnwnnsdSttawtGqcfvtdgkevlkttWll 93 
                  + F V+++     + w++q+ + + k+ +  +W +
  KKY15895.1 367 RLVFAVARDGVLPFSGWVAQVSNGQPKNAVIVVWAV 402
                 567889999999999999999888777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 3094.34
//
Query:       KKY15896.1  [L=994]
Description: putative cytokinesis regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (994 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.50
# Mc/sec: 6008.62
//
Query:       KKY15897.1  [L=451]
Description: hypothetical protein UCRPC4_g06083 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.004   16.1  26.7      0.037   12.9  26.3    2.3  1  XRCC4     DNA double-strand break repair and V(D)J recombinat
  ------ inclusion threshold ------
      0.095   13.5   1.2       0.14   13.0   0.3    1.8  2  FtsQ      Cell division protein FtsQ
       0.21   11.4   0.4       0.35   10.6   0.4    1.3  1  DUF1678   Protein of unknown function (DUF1678)


Domain annotation for each model (and alignments):
>> XRCC4  DNA double-strand break repair and V(D)J recombination protein XRCC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9  26.3   6.1e-06     0.037      31     291 ..      56     353 ..      26     432 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.1e-06
       XRCC4  31 GFkiiLtDGqsAWtgkvseeev......srEAkdmemer.ekYvdeLrkalv.leaeeaekykFdlskdeeesevlhlsyekklkdvsFkLGslkLqkv 121
                   +++ t+G s +tgkv e ++      s E +d   +   kYv +   al   +a++  +   ++s  ++ ++ l++ + k   +++ ++Gsl+L++ 
  KKY15897.1  56 DVDLLATEGTSPFTGKVRERKLqdlrskSYEGDDESFKTiLKYVLDGGDALPkVKATKDLEIVAEISGSDP-NQKLTIVLRKRIEQITQRVGSLELKQN 153
                 56778889999999999988763333334466666655425888888888874455555566667777666.4557999*****************986 PP

       XRCC4 122 eePaevirelisycLdqiaelqakNehLqkENerLlrdwsdvterlekyvkakEeleadLYkrFilvLNEKKaKiRsLqkllkelqeseesteqkreka 220
                 ++    + +    ++++  e+ ++   L       ++  ++++++le  vk k e e  ++++F  +LNEKK KiR+ q+ ++ ++ +++  e  ++ a
  KKY15897.1 154 DDEEVQLFDWTGLAVKVGREQTVEVADLTAKLAAAQEIIKKLEKNLEDLVKVKAEQEDAMFSQFAALLNEKKLKIRNQQRIISSANIDKSTLEGLERAA 252
                 6654445556666666777777788888888888888889999*************************************9999887776666544444 PP

       XRCC4 221 ..............................aksdkasdeeedydgstdeeseeeak........................kpsskaeasskddsllsse 265
                                               +                        +                         p++ +e+s+++     ++
  KKY15897.1 253 egashkatgsrkgkrkatepaadsessdgfD------------------------TmdageprnrgdfqadtesdrestpDPETASENSERELDEPPHD 327
                 4555555555555554444444444433331........................02222222222222222222222111333333333333332223 PP

       XRCC4 266 DitdvAPsRKrRqRlqkkleteakva 291
                   + + P+R     l+++++  +  +
  KKY15897.1 328 SPIKTGPTRSNARTLKRQISQPPSLS 353
                 34555666654443444433333333 PP

>> FtsQ  Cell division protein FtsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   2.3e-05      0.14      43     106 ..     134     196 ..      95     223 .. 0.69
   2 ?   -3.1   0.0       2.2   1.3e+04      30      57 ..     328     358 ..     314     368 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.3e-05
                 HHHHHCCS-HHHHH.S-SEE..-SS-TTEEEE-T.TS-EEEEES......TTHHHHHHT-CCHHHC.. CS
        FtsQ  43 vlevlaelpeelkpleisei..alserrrwqlvlddgvevklgreela..edleeklarlvkilpqlr 106
                 + ++++++++     ++ ++  ++++++++ql    g+ vk+gre+++  +dl++kla+ ++i+++l+
  KKY15897.1 134 LRKRIEQITQ-----RVGSLelKQNDDEEVQLFDWTGLAVKVGREQTVevADLTAKLAAAQEIIKKLE 196
                 3333333333.....333335588899999997778********95543467999**********993 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.2
                 S-EEE......S-HHHHHCCS-HHHHH.... CS
        FtsQ  30 lPlltGpegsekevlevlaelpeelkp...l 57 
                  P+ tGp  s +  l++  + p++l+p    
  KKY15897.1 328 SPIKTGPTRSNARTLKRQISQPPSLSPpaaS 358
                 6888888888887777777777888773333 PP

>> DUF1678  Protein of unknown function (DUF1678)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   5.9e-05      0.35      49     118 ..     135     209 ..     131     237 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.9e-05
     DUF1678  49 rwkrdskfkrGrtlylGkeenesvsfvewl...vsldrkevlklaral..rralrsvlktllteleelvkkkvrr 118
                 r + ++  +r  +l l ++++e v++ +w    v   r++ +++a       a + ++k+l ++le+lvk k+++
  KKY15897.1 135 RKRIEQITQRVGSLELKQNDDEEVQLFDWTglaVKVGREQTVEVADLTakLAAAQEIIKKLEKNLEDLVKVKAEQ 209
                 5666677778888999*************998999999999999975411457789*************988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1509  (0.0841653); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.51
# Mc/sec: 2684.59
//
Query:       KKY15898.1  [L=572]
Description: putative flavin-containing amine oxidasedehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0018   18.5   0.1     0.0044   17.2   0.1    1.7  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.065   12.8   0.1       0.13   11.9   0.1    1.4  1  Carbam_trans_C   Carbamoyltransferase C-terminus
       0.14   11.9   0.1       0.26   11.1   0.1    1.4  1  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 
       0.17   11.1   0.1        2.9    7.0   0.0    2.3  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
       0.21   11.6   0.5        0.6   10.2   0.1    2.0  2  DUF3860          Domain of Unknown Function with PDB structur


Domain annotation for each model (and alignments):
>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.2e-06    0.0044       1      55 [.       9      66 ..       9      83 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.2e-06
                   EE--SHH.HHHHHHHHHCC....TEEEEEE-SSSSSSGGG-EECETTCEECTS---EEET CS
  NAD_binding_8  1 IvGaGls.GlvaAylLaka....gfdvlllekrdrlGGraasyevpgvrvdygahifhgs 55
                   +vGaG++ Gl+   + ++       +++l+++ d++GG+a s+ +++ r  yga++++++
     KKY15898.1  9 VVGAGAAvGLSSPTATSRSpailTSKITLVDAVDYCGGQAFSIPIDKDR--YGASWLNQG 66
                   89**987699999998886445566********************9999..9****9885 PP

>> Carbam_trans_C  Carbamoyltransferase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   3.6e-05      0.13      67     115 ..     324     372 ..     302     382 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.6e-05
  Carbam_trans_C  67 yfeeekespymllvakvkeekreeipavtHvDgtaRvqtvkkeanpryh 115
                     +  ++++++ym   ++   +++++++   H+D+t R+ + kk+ +p y+
      KKY15898.1 324 ITVTHNDAEYMKKHYENFYNEEQAVETLSHIDQTNRLEMAKKSFKPMYY 372
                     444667899**********************************999987 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   7.4e-05      0.26      40      63 ..       4      27 ..       1      37 [. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.4e-05
                     -SEEEEESTSSHHHHHHHHHHHHS CS
  Eno-Rase_NADH_b 40 pkkvLviGaStGYGLAsriaaafg 63
                     pkkvLv+Ga +  GL+s  a++++
       KKY15898.1  4 PKKVLVVGAGAAVGLSSPTATSRS 27
                     9****************8887665 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.041   1.5e+02     143     175 ..       5      42 ..       2      67 .. 0.56
   2 ?    7.0   0.0    0.0008       2.9     187     215 ..     220     251 ..     197     299 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.041
                  SEEEEES-SH.HHHHHHHHH....HHHT-EEEEEESSS CS
                  xxxxxxxxxx.xxxxxxxxx....xxxxxxxxxxxxxx RF
  Pyr_redox_2 143 krivvvGgGy.iGvElAaal....aklgkevtlveard 175
                  k+++vvG+G+ +G+    a     a l +++tlv+a d
   KKY15898.1   5 KKVLVVGAGAaVGLSSPTATsrspAILTSKITLVDAVD 42 
                  55666666531333222221222244444444444444 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0008
                  HHHHHHHHHTTEEEEESCEEEEEEETTE...E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx...x RF
  Pyr_redox_2 187 aaleealekeGvevklgtsvkeidgnge...k 215
                  + +++ l ++Gv+v+l t+v+++ ++++    
   KKY15898.1 220 NDYKNDLIERGVNVRLSTEVTKVLKRDKsgvV 251
                  3356789999*************999984321 PP

>> DUF3860  Domain of Unknown Function with PDB structure (DUF3860)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00017       0.6      39      76 ..     237     274 ..     229     283 .. 0.91
   2 ?   -3.8   0.1       3.8   1.4e+04       8      30 ..     336     356 ..     330     361 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00017
     DUF3860  39 edltnvlekdkdilkvatvkksGarltdleiseWasss 76 
                  ++t vl++dk+ + v t+k++     + + s Wa+s+
  KKY15898.1 237 TEVTKVLKRDKSGVVVNTIKRTAKPDKHNPDSAWATSN 274
                 589*********************999*******9875 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.8
     DUF3860   8 dkikkylsererntieilewlas 30 
                 +   ++ +e    ++e l ++++
  KKY15898.1 336 KHYENFYNEE--QAVETLSHIDQ 356
                 4455666654..34666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 3503.71
//
Query:       KKY15899.1  [L=610]
Description: putative aromatic amino acid aminotransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-05   22.7   0.0     0.0012   18.1   0.0    2.8  2  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   6.7e-08    0.0012     157     269 ..     211     363 ..      46     418 .. 0.84
   2 !    1.3   0.0    0.0085   1.5e+02     298     358 ..     457     539 ..     439     544 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 6.7e-08
                    S-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHH.......................................HGGSTTSTTE CS
  Aminotran_1_2 157 phNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavat.......................................ranveeepnl 213
                     +NPt  +++ +  +++++++ +y ++++ D+ Y  + f s  a +                                        ++ ++++  +
     KKY15899.1 211 GQNPTSGLLSVARRKEIYKVCSEYDIIIVEDDPYWYLQFPSANALSMkfrgepisqnsppadykyndpakgqkssgfefldnlvpsYLSIDTDGRV 306
                    47999999999999999999***************999997666555999999***********************9999999988888888888* PP

                    EEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 214 livgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdall 269
                    + + ++sK   ++G R+G+i++++a+++ l ++  + +   s  +q +va+ l  +++
     KKY15899.1 307 IRLDTFSKTV-APGCRLGWITAQPAIIQKLFQVTESTTQqpSGFVQSLVAELLVGPHD 363
                    ********97.6**********************999999999999999999877765 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.0085
                    EEECCSCSSEEEEEETHHCHHHHHHH............HHHT..CTEEEEEGGGGTS.........TTEEEEECTTS-HHHHHH CS
  Aminotran_1_2 298 kvlasqsgmflltdlsaetakelskk............Llee..vgvyvtpgtsftv.........pgrlRitvAglteeelee 358
                    ++l++ +gmfl+ +++    + lsk             Ll++  + +++tpg+sf              +R+++A+ +e++l e
     KKY15899.1 457 TFLPPSAGMFLWLHVNIF-SHPLSKTispqrlvfalwvLLTQppYLLLITPGSSFSPtpaiaeekgYRYFRFCFAAIDEDKLAE 539
                    567888999999888766.44444445555667777776666588999999999998899999977779********9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.52
# Mc/sec: 3515.75
//
Query:       KKY15900.1  [L=356]
Description: putative er to golgi transport protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-48  163.7   7.3    6.6e-48  163.5   7.3    1.0  1  TPT             Triose-phosphate Transporter family
    0.00019   21.6  26.7      0.023   14.8   4.3    3.0  2  EamA            EamA-like transporter family
  ------ inclusion threshold ------
       0.02   14.1   0.7      0.059   12.5   0.0    1.8  2  Nuc_sug_transp  Nucleotide-sugar transporter
       0.32   11.2   3.2       0.17   12.1   0.5    1.9  2  YjcB            Family of unknown function
       0.95    8.6  12.9        7.6    5.6  12.9    2.0  1  UAA             UAA transporter family


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.5   7.3   1.8e-51   6.6e-48      68     289 ..       4     242 ..       1     243 [. 0.91

  Alignments for each domain:
  == domain 1  score: 163.5 bits;  conditional E-value: 1.8e-51
         TPT  68 ilplalvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGvalasvtElsFnligfisAlisnltfslrnifsKk 166
                  lpl+++++lgh+l+ ++ sk++VS  ht+K + P+Ftv+  rl+++ ++  + ylsL+p+ +Gv+la   + s n++g+++  +++++f+++nifsKk
  KKY15900.1   4 ALPLSVFQLLGHILSAFATSKIPVSLVHTIKGLSPLFTVLAYRLFFRIRYARATYLSLIPLTAGVMLACSADFSTNMVGITCSFVATVVFVTQNIFSKK 102
                 589************************************************************************************************ PP

         TPT 167 llkk.lkd.......ldalnlfaiitilslllllPvallvegvlktpsllkst........k.vslkevllllllsgvlfhlynqvaymvLervspvth 248
                 l+++  +        ld+lnl+ + ++ +++l+ Pv+ll+eg+    + ++ +        +     +++l+ + +gv+++ +n++a+ +L++ spv++
  KKY15900.1 103 LFNEaARAesgdsrkLDKLNLLCYCSAGAFILTAPVWLLFEGFPILSDFFSDGkvdlssnkNaLDHGRLTLEFFFNGVFHFGQNILAFILLSMLSPVSY 201
                 ***984445788999***************************4444444444444466654324478999***************************** PP

         TPT 249 svantvKrvvvIvlsvlvfknpvsllnaiGtavaivGvflY 289
                 sva+ +Krv v+v+++l f+ + ++ + +G  ++ +G +lY
  KKY15900.1 202 SVASLIKRVWVVVIAILWFGSSTTTAQGLGIFLTFIGLYLY 242
                 ***************************************** PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   4.3   6.5e-06     0.023      76     134 ..      12      70 ..       1      73 [. 0.91
   2 !   11.1  14.6   9.1e-05      0.33      68     134 ..     175     241 ..      80     242 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.5e-06
        EamA  76 vlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvll 134
                 +l+++l   a +k+++s +  i  l+P+ft++   l+++ +    ++l+++   +Gv+l
  KKY15900.1  12 LLGHILSAFATSKIPVSLVHTIKGLSPLFTVLAYRLFFRIRYARATYLSLIPLTAGVML 70 
                 6889999**************************************************98 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 9.1e-05
        EamA  68 lllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvll 134
                 +++  +  +  ++l f++l+ +s+   s+++++  v+++++++l++g + t  q lgi+l ++G++l
  KKY15900.1 175 FFFNGVFHFGQNILAFILLSMLSPVSYSVASLIKRVWVVVIAILWFGSSTTTAQGLGIFLTFIGLYL 241
                 444444445556899*************************************************998 PP

>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.16   5.7e+02     121     152 ..      39      70 ..       6     102 .. 0.72
   2 ?   12.5   0.0   1.7e-05     0.059      84     168 ..     173     257 ..     152     274 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.16
  Nuc_sug_transp 121 lttalfsvllLkrklskkqWlslllLvaGval 152
                     l t l   l+ + +  +  +lsl+ L+aGv l
      KKY15900.1  39 LFTVLAYRLFFRIRYARATYLSLIPLTAGVML 70 
                     55566666667777777777777777777765 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.7e-05
  Nuc_sug_transp  84 lklavPsliYtvqnnllyvalsnLdaatyqvtyqlkilttalfsvllLkrklskkqWlslllLvaGvalvqlkqkeseesekaaa 168
                     l      + +  qn l+++ ls L   +y v+  +k +   ++++l  + + ++ q l ++l ++G+ l   ++ +  ++++a+a
      KKY15900.1 173 LEFFFNGVFHFGQNILAFILLSMLSPVSYSVASLIKRVWVVVIAILWFGSSTTTAQGLGIFLTFIGLYLYDRNSMDDAAERRAKA 257
                     555555666677*******************************************************998877776655555444 PP

>> YjcB  Family of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.5   4.7e-05      0.17      17      74 ..      37      94 ..      11     108 .. 0.71
   2 ?   -1.8   0.1         1   3.6e+03       6      27 ..     204     225 ..     201     229 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.7e-05
        YjcB 17 savlmflastlnirlr..ksdykalavvvsglGiaasCwfvtgllGitlaalalaeiwen 74
                s ++  la  l  r+r  ++ y +l  +++g+ +a s  f t ++Git + +a   ++  
  KKY15900.1 37 SPLFTVLAYRLFFRIRyaRATYLSLIPLTAGVMLACSADFSTNMVGITCSFVA--TVVFV 94
                555666666665555511555666666667777777778**********9874..33333 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1
        YjcB   6 aslvllrwellsavlmflastl 27 
                 asl+   w ++ a+l f +st 
  KKY15900.1 204 ASLIKRVWVVVIAILWFGSSTT 225
                 6777777999999999998875 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  12.9    0.0021       7.6      87     298 ..      25     242 ..       7     246 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0021
         UAA  87 isvPvhiifrssklipvmilGililgkrYsllqylsvllltlGviiftllsakdkkedskeslnkfllGiallvlallldavlgl.....vqeklykky 180
                 i+v +   ++  + + + ++  l+ + rY    yls++ lt+Gv+++     +d+        +++++Gi+  ++a+++    ++     ++e++  + 
  KKY15900.1  25 IPVSLVHTIKGLSPLFTVLAYRLFFRIRYARATYLSLIPLTAGVMLACS---ADF--------STNMVGITCSFVATVVFVTQNIfskklFNEAARAES 112
                 6666666689999999999**************************9988...344........455566665555555555555500000455555566 PP

         UAA 181 gkhsk.ealfyshllslplfl.............llqgellsavkflsesedvallslpsklfylllnvltqyvcikg.VlilisefgaltvtlvltlR 264
                 g ++k + l     +s   f+             +l ++++s  k+ ++s++ a l   +  +  ++n +   ++++   +il s  +    ++   + 
  KKY15900.1 113 GDSRKlDKLNLLCYCSAGAFIltapvwllfegfpIL-SDFFSDGKVDLSSNKNA-LDHGRLTLEFFFNGVFH-FGQNIlAFILLSMLSPVSYSVASLIK 208
                 777777777665555555555466776554444222.33333333333333333.46677777777777765.66665158888888888899999999 PP

         UAA 265 KfvslllSillFknpltlqhlvgtllVflgllly 298
                 ++  +++ il+F+   t  + +g  l f+gl+ly
  KKY15900.1 209 RVWVVVIAILWFGSSTTTAQGLGIFLTFIGLYLY 242
                 99999***************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.50
# Mc/sec: 2138.86
//
Query:       KKY15901.1  [L=1114]
Description: putative pumilio-family rna binding repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-36  120.9   5.2    6.9e-06   25.5   0.0    8.8  9  PUF           Pumilio-family RNA binding repeat
    8.1e-07   28.7   0.3    1.9e-06   27.5   0.3    1.5  1  Peptidase_S9  Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> PUF  Pumilio-family RNA binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2     0.014   1.3e+02      11      34 ..     772     795 ..     767     796 .. 0.89
   2 !   23.7   0.0   2.9e-09   2.6e-05       2      31 ..     799     828 ..     798     831 .. 0.89
   3 !   25.5   0.0   7.7e-10   6.9e-06       2      31 ..     835     864 ..     834     868 .. 0.88
   4 !    4.7   0.0    0.0031        28      11      24 ..     880     893 ..     878     895 .. 0.92
   5 !   11.2   0.0   2.6e-05      0.23       8      32 ..     917     941 ..     911     943 .. 0.84
   6 !   13.2   0.0     6e-06     0.054       3      34 ..     948     979 ..     946     980 .. 0.84
   7 !   19.8   0.0     5e-08   0.00044       3      33 ..     984    1014 ..     983    1016 .. 0.79
   8 !   12.1   0.1   1.3e-05      0.12       8      23 ..    1033    1048 ..    1031    1053 .. 0.87
   9 ?   -2.5   0.0       0.6   5.4e+03       3      18 ..    1064    1079 ..    1063    1079 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.014
                 TSTTHHHHHHHHHHHSCHHHHHHH CS
         PUF  11 tdqyGnyvvQkllehateeqkkli 34 
                 +dq ++ ++Q+ l++ t eqk+ i
  KKY15901.1 772 NDQQASIFLQQKLKVGTAEQKFEI 795
                 5888999**************988 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 2.9e-09
                 HGGGHHHHHTSTTHHHHHHHHHHHSCHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQkllehateeqk 31 
                 i++    L+++++Gn++vQ+++eh t+ q+
  KKY15901.1 799 IINQAYPLMINRFGNFLVQRCFEHGTPDQV 828
                 6788889*****************999886 PP

  == domain 3  score: 25.5 bits;  conditional E-value: 7.7e-10
                 HGGGHHHHHTSTTHHHHHHHHHHHSCHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQkllehateeqk 31 
                 i gn+++Ls d++G++v+Qk ++  +e+qk
  KKY15901.1 835 IHGNVLSLSMDPFGCHVIQKAFDSVPESQK 864
                 689********************8777776 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.0031
                 TSTTHHHHHHHHHH CS
         PUF  11 tdqyGnyvvQklle 24 
                 +++y+++v Qkl+e
  KKY15901.1 880 IHRYACHVWQKLFE 893
                 79**********98 PP

  == domain 5  score: 11.2 bits;  conditional E-value: 2.6e-05
                 HHHTSTTHHHHHHHHHHHSCHHHHH CS
         PUF   8 qLstdqyGnyvvQkllehateeqkk 32 
                 + +    G+ vvQ+++e ++ee+k+
  KKY15901.1 917 EVALGETGSLVVQNIFENCVEEEKR 941
                 5566678***************987 PP

  == domain 6  score: 13.2 bits;  conditional E-value: 6e-06
                 GGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHH CS
         PUF   3 kgnlvqLstdqyGnyvvQkllehateeqkkli 34 
                 + n+  ++  q+Gn+ +Q+l eha + +k+++
  KKY15901.1 948 IANIDLIAHGQFGNWCIQHLCEHAAPADKRRV 979
                 5667777788*************999999876 PP

  == domain 7  score: 19.8 bits;  conditional E-value: 5e-08
                  GGGHHHHHTSTTHHHHHHHHHHHSCHHHHHH CS
         PUF    3 kgnlvqLstdqyGnyvvQkllehateeqkkl 33  
                  ++n  ++s+dq+++ vv+k+l+  ++e  ++
  KKY15901.1  984 LTNAYSYSIDQFASKVVEKCLKIGGTEFLDR 1014
                  678999****************955554443 PP

  == domain 8  score: 12.1 bits;  conditional E-value: 1.3e-05
                  HHHTSTTHHHHHHHHH CS
         PUF    8 qLstdqyGnyvvQkll 23  
                  +++ dqyGny+vQ++l
  KKY15901.1 1033 DIAGDQYGNYLVQWIL 1048
                  6777**********98 PP

  == domain 9  score: -2.5 bits;  conditional E-value: 0.6
                  GGGHHHHHTSTTHHHH CS
         PUF    3 kgnlvqLstdqyGnyv 18  
                  +++ v+L   ++G++v
  KKY15901.1 1064 RKHMVSLRGSKFGSRV 1079
                  56777777789***98 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.3   2.1e-10   1.9e-06      61     188 ..       8     131 ..       3     149 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 2.1e-10
                   --GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTSTHHHCCCC--TTTCHHHHHHHHHH-CGGG--..---EEEEEEETT-S CS
  Peptidase_S9  61 vdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdllteeymewgnpeeneegykelspyspldnvk..aypplLlihGlaDd 155
                   v+ +  ++ G+S+GG+ t  +l++rpd   aa+ + + +   +y       t + +  +    +   ++ l++y++   v   + +p++ +hG aDd
    KKY15901.1   8 VKLDAWFVSGHSNGGQGTWFVLTHRPDQVFAAAPASGYTSIQNYVPY----TMWQEADPRM--SSLIHSSLASYRHELLVPnfEGVPIFQQHGSADD 98 
                   66788899*******************999999********999987....4555554544..444466777777766666999************* PP

                   SS-THHHHHHHHHHH--S-SEEEEEETTS-SST CS
  Peptidase_S9 156 rvppaealklvaaLqkkgknvlllifpdegHgv 188
                   +vp  ++  + +   +   ++ +  fp+ gH+ 
    KKY15901.1  99 NVPAYHSRLMSEMNARSFFPSSYAEFPGNGHWW 131
                   **9999976655555777779999******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.51
# Mc/sec: 6538.54
//
Query:       KKY15902.1  [L=493]
Description: putative hexose transporter hxt13 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-126  423.3  19.8   1.4e-126  423.0  19.8    1.0  1  Sugar_tr  Sugar (and other) transporter
    3.8e-24   85.3  46.8    8.1e-21   74.3  24.2    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.11   12.6  34.3       0.64   10.2   9.6    3.8  3  DUF3792   Protein of unknown function (DUF3792)
          1    9.5   5.2       0.72   10.0   0.6    3.0  4  DUF962    Protein of unknown function (DUF962)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  423.0  19.8  3.1e-130  1.4e-126      44     452 .]      15     430 ..       3     430 .. 0.97

  Alignments for each domain:
  == domain 1  score: 423.0 bits;  conditional E-value: 3.1e-130
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                 s+v++g iv+++ +G +iG+l++ +l+d++GR+ ++ ++a++++ig v+ +++   + + ++++gR+ +G+g+G+ s++vPmy+sE  pk++R+  v  
  KKY15902.1  15 SDVRQGTIVGLLCIGTLIGCLISAKLADTWGRRLTISFSAFFYIIGVVIEITSS--RVWAQFAMGRFTAGLGIGALSTVVPMYQSESIPKAIRSSTVAS 111
                 6899**************************************************..679999************************************* PP

                 HHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.... CS
    Sugar_tr 143 yqlaitfGilvaaifglgl.nktsnadgwrillglqlvpallllilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeee.. 238
                 yql+it+Gi  a+++++g+ +k++n+ +wri+ gl++++a+ll +++l+lPESPry + kg+e+ea++++ +l+g++++++ ++ee+++++++ ++e  
  KKY15902.1 112 YQLFITLGIWTAYMVNWGTeSKYHNSAQWRIPNGLSALWAILLGFMILLLPESPRYAYRKGREDEARATMGRLNGVAPDSDLINEEIREIQEKIDAEta 210
                 ****************************************************************************99999999999999999999999 PP

                 .....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 239 ..kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg 335
                    + w e ++   +++r+++g+vlq++qqltG n+++yy++tif+ +gls+s++++ii+g+vn++at+v+++lv+ +GRR+ l+ Gaa m+ic++i++
  KKY15902.1 211 ggDHPWYECFTGPRMLYRTILGMVLQAGQQLTGANYFFYYGTTIFSATGLSNSYVTSIILGTVNVAATIVGLWLVENVGRRKALMGGAAWMFICLFIYA 309
                 99**********9************************************************************************************** PP

                 ...HHHHTTSS.......CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHH CS
    Sugar_tr 336 .ivalllvaks....kaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlf 429
                     + l +++      a++++ivf++lfi++fa++wgp++w +v El+p + R++ +a+a+a+nwl+nflis++ ++it+ i  + ++lvf+g++ + 
  KKY15902.1 310 fVGHYQLDHADptstPQAGNIMIVFTCLFICAFATTWGPLVWAIVGELYPARYRAVSMALATASNWLFNFLISFFSTMITSEID-YLYGLVFGGCCFAL 407
                 66666666666999999*******************************************************************.************** PP

                 HHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 430 iifvfffvpetkgrtleeieelf 452
                 +++v+ffv+etk r+leei++++
  KKY15902.1 408 FFIVYFFVIETKDRSLEEIDTMY 430
                 ********************996 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3  24.2   1.8e-24   8.1e-21      33     344 ..      18     373 ..       4     376 .. 0.77
   2 !   25.0  14.6   1.8e-09   8.1e-06      46     179 ..     275     422 ..     273     456 .. 0.76

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 1.8e-24
       MFS_1  33 eigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsag 129
                  +g++++l  +g++++ l+ + l+d +Grr ++ ++++++++g+++  ++ s +w  ++ +r+ +Glg gal +++  + ++  pk  r++ ++ ++++
  KKY15902.1  18 RQGTIVGLLCIGTLIGCLISAKLADTWGRRLTISFSAFFYIIGVVIE-ITsSRVWaQFAMGRFTAGLGIGALSTVVPMYQSESIPKAIRSSTVASYQLF 115
                 48999**************************************4443.34499********************************************** PP

       MFS_1 130 fslGailg.pllggllasslg....Wravfyilaivsllafvlfllllpeepperkrkspkeee........................kgtgpaplvp. 198
                 + lG+  + ++  g  + +      Wr +  + a+ ++l++ + +lllpe+p+   rk  ++e                         +        + 
  KKY15902.1 116 ITLGIWTAyMVNWGTESKY-HnsaqWRIPNGLSALWAILLGFM-ILLLPESPRYAYRKGREDEAratmgrlngvapdsdlineeireiQ--------Ek 204
                 *****66615555544433.25788***************884.477777777777766555559999999999999777777555331........13 PP

       MFS_1 199 ..........awkallkdpvlw.illialllfffgfsg.....lltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllal 281
                           +w + ++ p ++   +++++l + g ++     ++++ +++  +  gls+  +++  + +l+ v++++ +++ +l+  +grr++l+ + 
  KKY15902.1 205 idaetaggdhPWYECFTGPRMLyRTILGMVLQA-GQQLtganyFFYYGTTI-FSATGLSN-SYVT--SIILGTVNVAATIVGLWLVENVGRRKALMGGA 298
                 335557788999999999988553333333332.33333344366666664.77777773.5555..89999999999********************* PP

       MFS_1 282 lllllaalglallavt........ssavllllvlvl..iGf.glgfv.fpsllalasdlappeeagtasglfnta 344
                 + ++++++++a+++++        s++ ++ +++v+  + + +++++  p+++a++ +l+p+++++  ++l++  
  KKY15902.1 299 AWMFICLFIYAFVGHYqldhadptSTPQAGNIMIVFtcLFIcAFATTwGPLVWAIVGELYPARYRAVSMALATAS 373
                 ********************999844444444444444333255555799*****************99998765 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 1.8e-09
       MFS_1  46 avaslplGrlsdrfGrrrvlllglllfalglllllf........a.......sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsa 128
                 ++a++++ +l++++Grr+ l+ g+++++++l++ +f        a       ++   +++ + +++++++ +  p++ a++ +++p + r+  ++l++a
  KKY15902.1 275 VAATIVGLWLVENVGRRKALMGGAAWMFICLFIYAFvghyqldhAdptstpqAGNImIVFTCLFICAFAT-TWGPLVWAIVGELYPARYRAVSMALATA 372
                 5678888899********************6666675555544415444444334436888888888885.8889999********************* PP

       MFS_1 129 gfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepper 179
                 ++ l   l   ++ +++s + +    +++++ ++ +f ++++++ e++ ++
  KKY15902.1 373 SNWLFNFLISFFSTMITSEIDYL-YGLVFGGCCFALFFIVYFFVIETKDRS 422
                 *****************999974.446666666666555566665555444 PP

>> DUF3792  Protein of unknown function (DUF3792)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   4.9     0.045     2e+02      41     110 ..      22      88 ..      14      93 .. 0.68
   2 ?    6.8   9.5    0.0017       7.5      26      84 ..     254     312 ..     246     343 .. 0.73
   3 ?   10.2   9.6   0.00014      0.64       3      90 ..     331     419 ..     326     434 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.045
     DUF3792  41 iliililsvfigGflagkkakkkgllnGllvGllyflillllsllikksgsafslkllikllllllagai 110
                 i+ +l+++++ig+++++k a++ g    + + +++++i +++ + ++    + +  ++ ++ ++l +ga+
  KKY15902.1  22 IVGLLCIGTLIGCLISAKLADTWGRRLTISFSAFFYIIGVVIEITSS---RVWAQFAMGRFTAGLGIGAL 88 
                 667889999***********997777777666666666555555553...33334444555666666665 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0017
     DUF3792  26 llyftslsekvlsililiililsvfigGflagkkakkkgllnGllvGllyflillllsl 84 
                 ++  t ls+++++ +il ++ +++ i G+ +  + ++++ l G+++ ++++l+++++  
  KKY15902.1 254 IFSATGLSNSYVTSIILGTVNVAATIVGLWLVENVGRRKALMGGAAWMFICLFIYAFVG 312
                 566799*********************************99999998777777654433 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00014
     DUF3792   3 kavlkgllialvitlilllilall..lyftsls.ekvlsililiililsvfigGflagkkakkkgllnGllvGllyflillllsllikksg 90 
                 + v+++l+i+ ++t    l+ a++  ly       +v  +l++++  l  f+ +f++  ++ +  +l+Gl++G ++f++++++ +++ +++
  KKY15902.1 331 MIVFTCLFICAFATTWGPLVWAIVgeLYPA--RyRAVSMALATASNWLFNFLISFFSTMITSEIDYLYGLVFGGCCFALFFIVYFFVIETK 419
                 455666666666666666666666433333..234666788899999999******************************99999994443 PP

>> DUF962  Protein of unknown function (DUF962)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.77   3.4e+03      30      36 ..     118     124 ..      46     163 .. 0.62
   2 ?   -1.0   0.0      0.44     2e+03      74      94 ..     213     233 ..     203     234 .. 0.86
   3 ?   10.0   0.6   0.00016      0.72      31      75 ..     275     326 ..     254     345 .. 0.70
   4 ?   -0.9   0.2      0.39   1.8e+03      53      53 ..     354     354 ..     325     416 .. 0.53

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.77
      DUF962  30 lilltvl 36 
                 l ++t+ 
  KKY15902.1 118 LGIWTAY 124
                 3333332 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.44
      DUF962  74 knplqsllidplmvllellgk 94 
                 ++p++  +++p+m+   +lg+
  KKY15902.1 213 DHPWYECFTGPRMLYRTILGM 233
                 89************9998876 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00016
      DUF962  31 illtvlllllrak.......lklllalfvvgyifafvGHfvfEkrkPAlfkn 75 
                 +++t++ l l  +       +  ++ +f++ +i afvGH+ + +  P++  +
  KKY15902.1 275 VAATIVGLWLVENvgrrkalMGGAAWMFICLFIYAFVGHYQLDHADPTSTPQ 326
                 3333333333333666666567788899999**************9987655 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.39
      DUF962  53 v 53 
                 v
  KKY15902.1 354 V 354
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       845  (0.0471303); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 2953.48
//
Query:       KKY15903.1  [L=843]
Description: putative dna repair helicase rad25 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.1e-118  394.9   4.5   2.1e-118  394.0   4.5    1.4  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
    1.2e-35  122.4   0.0    5.8e-35  120.2   0.0    2.0  2  Helicase_C_3   Helicase conserved C-terminal domain
    6.9e-16   58.7   0.0    2.2e-15   57.1   0.0    1.9  1  ResIII         Type III restriction enzyme, res subunit
    2.4e-13   50.4   0.1    7.2e-13   48.9   0.1    1.9  1  Helicase_C     Helicase conserved C-terminal domain
      3e-07   29.5   0.0    4.1e-07   29.0   0.0    1.4  1  SNF2_N         SNF2 family N-terminal domain
     0.0012   17.8   0.0     0.0021   17.0   0.0    1.4  1  AAA_34         P-loop containing NTP hydrolase pore-1


Domain annotation for each model (and alignments):
>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.0   4.5    7e-122  2.1e-118       1     239 [.     523     760 ..     523     778 .. 0.97

  Alignments for each domain:
  == domain 1  score: 394.0 bits;  conditional E-value: 7e-122
  ERCC3_RAD25_C   1 LqekgylakvqcaevWcpmtaefykeylkakskkkkllyvmnpnkfracefLikyhekrgDkiivfsDnvfaLkeyakklkkpyiyGetseaerlk 96 
                    L+++g++a+vqcaevWcpmt efykey k++skkk+l+y mnp+kf++c+fLi+yhekrgDk ivfsDnv++L++ya+kl+k+yiyG t+++erl+
     KKY15903.1 523 LASQGHIARVQCAEVWCPMTIEFYKEYQKESSKKKALYYYMNPTKFQVCQFLIDYHEKRGDKTIVFSDNVYTLEQYARKLNKAYIYGGTPQSERLR 618
                    6899******************************************************************************************** PP

  ERCC3_RAD25_C  97 ilqkfkknpkvntiflskvgDtsiDlPeanvliqisshfgsrrqeaqrlGriLrakkksneeefnaffYsLvskDtkemaystkrqqflvdqGYaf 192
                    il +f++n++vnt+flsk+gDts+DlPea++liqissh+gsrrqeaqrlGriLrak++ n+e+fnaffYsLvskDt em+ys+krq+flvdqGYaf
     KKY15903.1 619 ILANFQHNEQVNTVFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKRR-NDEGFNAFFYSLVSKDTMEMYYSAKRQAFLVDQGYAF 713
                    **********************************************************.9************************************ PP

  ERCC3_RAD25_C 193 kviteleeleeeeelaystkeeqkellqkvlaakdeeaeeeelekel 239
                    kvit+l+++e+ ++la++t++e+ ell++v+ +++++ + e+++++l
     KKY15903.1 714 KVITQLQGIENLPNLAFRTQHERVELLTQVMLQNEAAVDVENVQDDL 760
                    **************************************999998876 PP

>> Helicase_C_3  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.2   0.0   1.9e-38   5.8e-35       8     125 ..     107     225 ..     104     227 .. 0.97
   2 ?   -1.3   0.0      0.74   2.2e+03      72     103 ..     472     500 ..     436     505 .. 0.70

  Alignments for each domain:
  == domain 1  score: 120.2 bits;  conditional E-value: 1.9e-38
  Helicase_C_3   8 tillegdsplaeearaaLaafAelesrpehahtyrltplSlrrAldaGltaeeiiefLerlskypvPqaleylirdvarryGklrlgl.easlvlrs 103
                   +i+le +spla++a+++L+++Ae++srp+++h+yrlt++Sl++Al++Gl+ ++ii++Le+lsk+pv ++++++i++++++yG++rl+l e++++l+s
    KKY15903.1 107 KIILESFSPLAHQAEDFLITIAEPQSRPQFLHEYRLTEHSLYAALSVGLSGDDIIKTLEKLSKTPVADSVKEFINKHTKSYGRVRLVLrENKFFLES 203
                   69************************************************************99********************************* PP

  Helicase_C_3 104 ddpalleelladkkiaklllrr 125
                   +dp+++++ll+d+ + +++++ 
    KKY15903.1 204 EDPEIIQMLLRDEIVGPCRIAD 225
                   ****************999875 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.74
  Helicase_C_3  72 pvPqaleylirdvarryGklrlgleaslvlrs 103
                    vP ++   i + +r++ kl l    +++lr 
    KKY15903.1 472 VVPAKIFRRIGERVRSHSKLGLT---ATLLRE 500
                   48888888899999999888877...355555 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   7.4e-19   2.2e-15       3     169 ..     341     497 ..     339     499 .. 0.89

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 7.4e-19
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..... CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekds 101
                 ++r+yQe+a+ ++  +    r k g+i++++G+GKTlv + +   ++k      +++l+ +   + q+++ef k+++ + ++i  ++s++k+k+    +
  KKY15903.1 341 QIRSYQEKALGKMFGN---GRAKSGIIVLPCGAGKTLVGITAGCTIRK-----SIIVLCTSSMSVVQWRNEFLKWSDIDESDIAAFTSENKDKF----R 427
                 789*******999744...6899****************999999999.....59************************999999999999999....9 PP

                 ..-SEEEEEHHHHHHTH...........HHHTTT-SEEEEETGGGTTS.TTTHHHHHT---SEEEEEESS- CS
      ResIII 102 tnkkilvttiqsldadseee...eeeseellrdrfdviiiDEaHrlgakkswreilekfkeavllglTATp 169
                  ++ i+v+t++++++ + ++   ++  +   + +  ++i DE+H + a k +r+i e +++  +lglTAT+
  KKY15903.1 428 GDAGIIVSTYSMISQTRARAhdsQQVMDWITSREWGLMILDEVHVVPA-KIFRRIGERVRSHSKLGLTATL 497
                 ****************96665544444445555556************.*********************7 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.1   2.4e-16   7.2e-13       7     110 ..     571     673 ..     566     674 .. 0.87

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 2.4e-16
                 HHHH..HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSSEEEESGGGTSSSTSTTESEEEESSSS.SSHHHHH CS
  Helicase_C   7 lell..kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesdvLiatdvaerGidipkvnlVinfdlp.rnvtsyi 101
                 +++l   +e++g+k+++f+ ++ +le  ++    ++++ a+++g +pq+er++il++f+ +++++ +  ++++ +++d+p+++++i+++    + ++  
  KKY15903.1 571 CQFLidYHEKRGDKTIVFSDNVYTLE--QYA---RKLNKAYIYGGTPQSERLRILANFQhNEQVNTVFLSKIGDTSLDLPEATCLIQISSHyGSRRQEA 664
                 344347789****************7..777...558899******************9667778**************************5559**** PP

                 HHHTTSSST CS
  Helicase_C 102 qriGRtgRa 110
                 qr GR+ Ra
  KKY15903.1 665 QRLGRILRA 673
                 ********8 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.4e-10   4.1e-07      98     213 ..     338     495 ..      45     559 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.4e-10
                 -................................................EEEE--H.HHHHHHHHHHHHH-TTS-EEE--SSHHHH------------- CS
                 x................................................xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  98 p................................................tLivvPa.slldqWeneierhvsssalrvlvyggqkkmkkkntkvapkll 147
                 p                                                +++++ +   + qW ne+ ++   ++ ++ + ++++         ++k+ 
  KKY15903.1 338 PntqirsyqekalgkmfgngraksgiivlpcgagktlvgitagctirksIIVLCTSsMSVVQWRNEFLKWSDIDESDIAAFTSEN---------KDKFR 427
                 0555555555555555555555555555555555555555555555555899999944578***********9999888888864.........57899 PP

                 ----EEEE-HHHHHHHT..........TTS-S-S-SEEEES-GGGT--T.TSHHHHHHHH---S-EEEE-S CS
                 xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 148 adydvvittYdvlsreaelq....kkrsvlkqvewkrvvlDEghtlkns.tskaaeavskLstsnrwiltG 213
                  d+++++ tY+++s+  ++     ++++ ++++ew  ++lDE h +  +  +++ e v+   ++ ++ lt+
  KKY15903.1 428 GDAGIIVSTYSMISQTRARAhdsqQVMDWITSREWGLMILDEVHVVPAKiFRRIGERVR---SHSKLGLTA 495
                 **************8887768888999*****************997664344444333...555555555 PP

>> AAA_34  P-loop containing NTP hydrolase pore-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   6.9e-07    0.0021     124     184 ..     417     473 ..     368     501 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6.9e-07
      AAA_34 124 klkegkkikeseelkeGvlFvtYstliseskkkkksrleqlveWlgedfdGvivfDEchka 184
                  ++ ++k   + + + G++ +tYs+  +++ +      +q+++W+ +   G++++DE h +
  KKY15903.1 417 AFTSENKD--KFRGDAGIIVSTYSMISQTRARA--HDSQQVMDWITSREWGLMILDEVHVV 473
                 33333333..457899********988777764..5789*******9999*********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (843 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1296  (0.0722851); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 5585.46
//
Query:       KKY15904.1  [L=187]
Description: hypothetical protein UCRPC4_g06090 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-22   77.6   1.1    4.4e-22   77.6   1.1    2.1  2  DUF4748   Domain of unknown function (DUF4748)
  ------ inclusion threshold ------
       0.16   10.7   1.1       0.19   10.4   1.1    1.0  1  MCLC      Mid-1-related chloride channel (MCLC)


Domain annotation for each model (and alignments):
>> DUF4748  Domain of unknown function (DUF4748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   1.1     5e-26   4.4e-22       1      50 [.       3      52 ..       3      54 .. 0.96
   2 ?   -1.0   0.1      0.17   1.5e+03      31      43 ..     114     125 ..     111     127 .. 0.85

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 5e-26
     DUF4748  1 TvksiwlgWgslcvaGigayyfAKrsidadRaakleaerkrmrksnegeY 50
                T++s+w+gWgslcvaG+gay fAKr+i+adR+ +le+e +r++ ++++e 
  KKY15904.1  3 TIRSTWYGWGSLCVAGGGAYWFAKRQINADRQSRLEEELRRKELQRRMEA 52
                89*******************************************99996 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.17
     DUF4748  31 Raakleaerkrmr 43 
                 R+ +l+a +++m+
  KKY15904.1 114 RQVQLKA-NENMS 125
                 999****.99986 PP

>> MCLC  Mid-1-related chloride channel (MCLC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.1   2.1e-05      0.19     416     524 ..      25     127 ..      15     144 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 2.1e-05
        MCLC 416 srrdvlrerdvdlrfqtgnkspevlrafdlpdaearehpevvpsekssvlntslketaellgestkkesstessqsakavsgqdaagtaegspiaekaq 514
                 ++r++  +r+   r++   +  e+ r ++  +a +re p +   +k+  +++  + ++e ++e      s+essq   +vs    +gt + s   +++q
  KKY15904.1  25 AKRQINADRQ--SRLEEELRRKELQRRMEAAEARSRE-PIAKRPKKQKAVTSGDTGVTESKTEDHAGSPSAESSQDVAPVSHA--PGTVQKSEG-RQVQ 117
                 5677766665..4677777888999999999998888.6667777888889999999999999999999***********976..888886655.8999 PP

        MCLC 515 lkldsegspe 524
                 lk +++ s  
  KKY15904.1 118 LKANENMSVR 127
                 9999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1101  (0.0614089); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1332.83
//
Query:       KKY15905.1  [L=777]
Description: putative heterokaryon incompatibility protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-30  105.5   1.7      5e-29  101.5   1.7    2.3  1  HET       Heterokaryon incompatibility protein (HET)


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   1.7   2.8e-33     5e-29       1     146 []      46     300 ..      46     300 .. 0.85

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 2.8e-33
         HET   1 YeaLSYvWgdskekeeievng.klleltenledalqvlrklgerylWiDaiCInQdddkekskqvqlmadIYsnAelvivalgseseds.......... 88 
                 Y+aLSYvWg +++ ++i+v++   l +++nl++al+v+  +++ ++WiDaiCInQ d ke+++qvq m++IY +Ae v+++l +e++ s          
  KKY15905.1  46 YKALSYVWGPPQHVDRISVSSnASLPVGANLQAALRVCILHHVDFIWIDAICINQADLKEREQQVQIMRQIYGQAEEVLIWLDEEDDISavalhsairi 144
                 9************99**99875889*************************************************************8554665655655 PP

         HET  89 ..................gllalealralkkekleekeielkksaek.................................................... 117
                                                               +                                                    
  KKY15905.1 145 gqyldlpfvghtnvseaaI---------------------------Qagikvlekqveeddrlrklawddeditpdqieggltvtqvreigvrsrqqdk 216
                 5555555444333322111...........................12333333344444445566677788999999********************* PP

         HET 118 .......................................................kkellekeeraieellespwfkRvWvlQE 146
                                                                         +  ++ +++a+ ++  ++wfkRvW++QE
  KKY15905.1 217 yrainlandldpniseddidqfaralnvistakylptpttemfeenygdmfraigVRAPVHITWNAMCTVYAKSWFKRVWIIQE 300
                 ******************************************************988889999********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.47
# Mc/sec: 4937.20
//
Query:       KKY15906.1  [L=524]
Description: hypothetical protein UCRPC4_g06092 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-46  157.6  16.1      5e-46  157.6  16.1    2.6  2  DUF4048        Domain of unknown function (DUF4048)
      0.006   16.6   0.9      0.014   15.4   0.9    1.6  1  Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain
  ------ inclusion threshold ------
        2.3    9.0   6.8         10    6.9   0.1    3.8  3  MBD_C          C-terminal domain of methyl-CpG binding protei


Domain annotation for each model (and alignments):
>> DUF4048  Domain of unknown function (DUF4048)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.6  16.1   8.4e-50     5e-46       1     254 [.     182     412 ..     182     414 .. 0.72
   2 ?    0.8   5.2      0.06   3.6e+02     111     212 ..     423     521 ..     416     524 .] 0.48

  Alignments for each domain:
  == domain 1  score: 157.6 bits;  conditional E-value: 8.4e-50
     DUF4048   1 HtRtLSLLspekdsvklpfpqaqeskssesdaerasrlPRsatlPsvdrsdas.kkaeelskakeeveeekaqwrrslPPpsreaLlrTgkqmAsdlkd 98 
                 HtRtLSLLsp   ++k + + +++        + +s +  ++ lP    + ++ ++ae +s + +++  ++   r+slPP+sr+a ++TgkqmA+dlk+
  KKY15906.1 182 HTRTLSLLSPTA-TEKRSSESPSPII-----GQTPSPQLENDNLPEPLAAINEpTPAEFVSPSFSKT-YKDLANRHSLPPASRDAFVKTGKQMATDLKE 273
                 **********55.2222222333322.....344555556677765443333304455555555555.888999************************* PP

     DUF4048  99 GLWtFlEDirQAtvGeeginatesRtkqasqtskaprrqskrsslkasssrerasgsssrssssssskkaasaarkksgkdstskdievsFWsefGvdt 197
                 G WtF+EDirQAtvGeegi+at++Rt   s++  + +++++ +s+ a+     +++s sr++ ss  + +++   +  +k+s+s++ + sFW+efG++t
  KKY15906.1 274 GFWTFVEDIRQATVGEEGISATDNRTLRMSNS--EIEKPNS-QSTGAV-----PKTSKSREQLSSIPALNRQI--SSASKTSMSSTDNRSFWEEFGLET 362
                 ***************************87772..2222222.222222.....35677788777766666665..347789999999************ PP

     DUF4048 198 PeqtkkskskkkskskaaqkpskekreseesneldvdDnWdvWDtPqkpk..thtpsss 254
                 P+q+k+++++++++ k          +s  +++ld dD+Wd WD+P  p   +++ps s
  KKY15906.1 363 PQQKKSTRKTTADAGKG---------SSLITDLLDQDDHWDLWDSPAVPLttQKSPSES 412
                 ******99999888882.........33456799************9854346677766 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.06
     DUF4048 111 tvGeeginatesRtkqasqtskaprrqskrsslkasssrerasgsssrssssssskkaasaarkksgkdstskdievsFWsefGvdtPeqtkkskskkk 209
                 t+G  + n t++ ++++s+ +++++  ++ +++ +ss   +++ ++  s++ +++ +a +    k+ + +  +++ ++  +ef +d P ++++ +++++
  KKY15906.1 423 TIGSHATNDTHADSTTQSHRTSTSSVDTTTDGSGNSS-TSQTDDKTIESTTKDNNIAAIPW--PKKLHPARLSRTISDIMKEFEIDGPINEEALAAAEA 518
                 5666666655555554444333333333333333333.12222222222222222222222..233334444456677888888888888888777777 PP

     DUF4048 210 sks 212
                 +k+
  KKY15906.1 519 EKA 521
                 665 PP

>> Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.9   2.4e-06     0.014       3      25 ..     100     122 ..      98     126 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.4e-06
  Bap31_Bap29_C   3 iekLkkeLkkkkkDlealKkQae 25 
                    + +Lk+eL+++++Dl  lKkQ  
     KKY15906.1 100 VLELKEELQRAENDLVKLKKQWA 122
                    779******************65 PP

>> MBD_C  C-terminal domain of methyl-CpG binding protein 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1    0.0017        10      76      93 ..      93     110 ..      84     110 .. 0.94
   2 ?    2.6   0.0     0.037   2.2e+02      34      52 ..     198     216 ..     174     234 .. 0.70
   3 ?   -0.4   0.9      0.33     2e+03       7      31 ..     414     438 ..     398     471 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0017
       MBD_C  76 IrrQeekVkkaRkrLaea 93 
                 I +Qe++V ++++ L++a
  KKY15906.1  93 IAAQERRVLELKEELQRA 110
                 99**************97 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.037
       MBD_C  34 lhtssspitGqkkskkale 52 
                  + s+spi+Gq+ s ++ +
  KKY15906.1 198 SSESPSPIIGQTPSPQLEN 216
                 345568******8877644 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.33
       MBD_C   7 tldLpkslkpvgpgitdetllqsla 31 
                 +  L  s +++g + t++t   s +
  KKY15906.1 414 KHTLRHSNSTIGSHATNDTHADSTT 438
                 2233333334444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1531  (0.0853924); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.51
# Mc/sec: 3100.05
//
Query:       KKY15907.1  [L=533]
Description: putative cell division cycle [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-33  115.9   0.0    3.1e-33  114.8   0.0    1.6  1  ANAPC8         Anaphase promoting complex subunit 8 / Cdc23
    5.2e-26   89.4   5.4    0.00013   21.6   0.0    7.8  8  TPR_1          Tetratricopeptide repeat
      5e-25   85.6   8.2    1.3e-05   25.0   0.0    8.3  8  TPR_8          Tetratricopeptide repeat
    4.1e-21   73.3  11.8      0.045   13.9   2.8    8.8  8  TPR_2          Tetratricopeptide repeat
      2e-17   62.4  13.1     0.0051   17.5   0.0    8.1  8  TPR_14         Tetratricopeptide repeat
    6.5e-13   48.1   1.0      8e-07   28.6   0.3    5.4  5  TPR_11         TPR repeat
    1.1e-12   48.0   9.6      0.057   13.7   0.3    6.2  6  ANAPC3         Anaphase-promoting complex, cyclosome, subunit
    1.1e-12   48.4   9.5    1.2e-05   25.8   0.0    6.1  6  TPR_16         Tetratricopeptide repeat
    2.1e-11   43.7  15.7       0.19   12.5   0.2    8.5  8  TPR_6          Tetratricopeptide repeat
    4.2e-11   43.2   9.7      0.097   13.2   0.0    7.2  8  TPR_19         Tetratricopeptide repeat
    5.9e-10   39.3   6.2        0.3   11.4   0.0    6.7  7  TPR_12         Tetratricopeptide repeat
      1e-09   37.7   8.9        1.5    9.0   0.0    7.2  7  TPR_7          Tetratricopeptide repeat
    6.7e-08   32.6   3.5     0.0055   16.8   0.0    4.6  4  TPR_9          Tetratricopeptide repeat
    4.7e-07   29.7   0.6          4    8.0   0.0    5.2  4  TPR_17         Tetratricopeptide repeat
      1e-06   28.2   6.8     0.0045   16.2   4.5    4.7  4  TPR_15         Tetratricopeptide repeat
     0.0003   20.5   0.6        4.7    7.2   0.0    5.2  4  TPR_10         Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.024   13.2   0.0      0.037   12.6   0.0    1.2  1  MM_CoA_mutase  Methylmalonyl-CoA mutase
      0.063   13.4   0.4       0.87    9.7   0.0    2.8  2  DUF3856        Domain of Unknown Function (DUF3856)
       0.13   11.7   0.0       0.31   10.4   0.0    1.5  2  ThrE           Putative threonine/serine exporter
       0.15   12.4   0.5    1.1e+02    3.4   0.0    4.2  4  PPR            PPR repeat
       0.49   10.5   6.8          1    9.5   0.1    4.2  5  Fis1_TPR_C     Fis1 C-terminal tetratricopeptide repeat
        1.5    9.6   4.6         37    5.2   0.9    3.8  3  Sel1           Sel1 repeat
        1.6    9.5   4.6        1.3    9.9   1.3    2.7  1  TPR_4          Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> ANAPC8  Anaphase promoting complex subunit 8 / Cdc23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.8   0.0     4e-36   3.1e-33      61     140 .]       2     124 ..       1     124 [. 0.98

  Alignments for each domain:
  == domain 1  score: 114.8 bits;  conditional E-value: 4e-36
                 ...HHHHHHHHHTHHHHHHHHHHHHTT-HHHHHHH...........................................TTT--SHHHHHHHHHHHHHHH CS
      ANAPC8  61 nkdpeeaaleakeldkYllAkslFDckEfdrcaav...........................................lkdelsqkslFLalYakylag 116
                 n++p+eaale ke++kYllAks+FD++E+drcaav                                             ++lsqkslFLalYa+y++g
  KKY15907.1   2 NHNPREAALEMKEASKYLLAKSYFDTREYDRCAAVflppgipagglavyeksksrtplstpqktkgksrnptrpspadPFPKLSQKSLFLALYARYMSG 100
                 789*************************************************************************99999****************** PP

                 HHHC---------------SSSTT CS
      ANAPC8 117 ekrkeEesemvlgpqdkgnvvnke 140
                 ekrk+Eesemvlgp+d+g +vn+e
  KKY15907.1 101 EKRKDEESEMVLGPADGGVTVNRE 124
                 **********************97 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.77     6e+02       5      20 ..      18      33 ..      15      37 .. 0.86
   2 ?    1.0   0.0      0.57   4.4e+02       4      24 ..     155     175 ..     153     184 .. 0.79
   3 ?   -2.6   0.0       7.5   5.9e+03      19      28 ..     187     196 ..     187     198 .. 0.79
   4 !   19.6   0.0   7.1e-07   0.00055       2      34 .]     221     253 ..     220     253 .. 0.91
   5 !   21.6   0.0   1.7e-07   0.00013       3      34 .]     256     287 ..     255     287 .. 0.95
   6 !   13.0   1.9   8.6e-05     0.067       2      33 ..     289     320 ..     288     321 .. 0.94
   7 !   16.4   0.0   7.7e-06     0.006       6      28 ..     327     349 ..     322     350 .. 0.89
   8 !    8.9   0.0    0.0018       1.4       2      19 ..     397     414 ..     396     418 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.77
                HHHHHHHHHTT-HHHH CS
       TPR_1  5 ynlGnayfklgkydeA 20
                y l+  yf   +yd +
  KKY15907.1 18 YLLAKSYFDTREYDRC 33
                899**********975 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.57
                 HHHHHHHHHHTT-HHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyy 24 
                 ly  ++++++ ++++ A e +
  KKY15907.1 155 LYESALLHYHAKDFETASEIF 175
                 6777899999****9997766 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 7.5
                 HHHHHHHHHH CS
       TPR_1  19 eAleyyekAL 28 
                 +Al++y+  L
  KKY15907.1 187 DALDHYSNIL 196
                 69****8766 PP

  == domain 4  score: 19.6 bits;  conditional E-value: 7.1e-07
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 ++++  Gn y  + ++++A+ y+++AL+l+ n+
  KKY15907.1 221 ETCCVVGNYYSLKSEHEKAVMYFRRALTLDRNF 253
                 567778************************997 PP

  == domain 5  score: 21.6 bits;  conditional E-value: 1.7e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                 a+  +G+ y ++++   A+e y++A+ +n ++
  KKY15907.1 256 AWTLMGHEYIEMKNTHAAIESYRRAVDVNRKD 287
                 9***************************9875 PP

  == domain 6  score: 13.0 bits;  conditional E-value: 8.6e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                 +a+y+lG+ay  l +   Al yy++A  l+P 
  KKY15907.1 289 RAWYGLGQAYEVLDMSFYALFYYQRAAALRPY 320
                 8****************************996 PP

  == domain 7  score: 16.4 bits;  conditional E-value: 7.7e-06
                 HHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekAL 28 
                   G +y k+g+++ A++  ++AL
  KKY15907.1 327 AVGSCYSKMGRHEPAIKSLKRAL 349
                 5699******************9 PP

  == domain 8  score: 8.9 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHHHTT-HHH CS
       TPR_1   2 kalynlGnayfklgkyde 19 
                 ++ly+++++y klg+ d 
  KKY15907.1 397 ETLYQIAQLYEKLGDMDT 414
                 89*************985 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.29   2.2e+02       4      24 ..      17      37 ..      15      38 .. 0.86
   2 ?    2.9   0.0      0.21   1.6e+02       2      27 ..     153     178 ..     152     184 .. 0.88
   3 !   16.4   0.0   9.8e-06    0.0077       2      33 ..     221     252 ..     220     253 .. 0.93
   4 !   25.0   0.0   1.7e-08   1.3e-05       2      34 .]     255     287 ..     254     287 .. 0.94
   5 ?    3.8   0.7       0.1        80       1      32 [.     288     319 ..     288     321 .. 0.72
   6 !   18.1   0.0   2.7e-06    0.0021       2      28 ..     323     349 ..     322     349 .. 0.95
   7 !   12.1   0.0   0.00023      0.18       2      24 ..     397     419 ..     396     420 .. 0.85
   8 ?   -0.1   0.0       1.8   1.4e+03       3      27 ..     479     503 ..     477     505 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.29
                HHHHHHHHHHTT-HHHHHHHH CS
       TPR_8  4 yynlgsiylklgdyeeAkeyy 24
                 y+l++ y+++ +y+   +++
  KKY15907.1 17 KYLLAKSYFDTREYDRCAAVF 37
                599***********9987766 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.21
                 CHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyeka 27 
                 e++y  ++++   +d+e A e ++  
  KKY15907.1 153 EYLYESALLHYHAKDFETASEIFNDL 178
                 789999***************99865 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 9.8e-06
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 e ++  g+ y+ + ++e+A+ y+++al+ld++
  KKY15907.1 221 ETCCVVGNYYSLKSEHEKAVMYFRRALTLDRN 252
                 679999************************97 PP

  == domain 4  score: 25.0 bits;  conditional E-value: 1.7e-08
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 +a+ ++g+ y+++++ ++A+e+y++a++ ++++
  KKY15907.1 255 SAWTLMGHEYIEMKNTHAAIESYRRAVDVNRKD 287
                 69**************************99985 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.1
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldp 32 
                 ++a+y lg++y+ l     A  yy++a  l+p
  KKY15907.1 288 YRAWYGLGQAYEVLDMSFYALFYYQRAAALRP 319
                 58*********877666666666666666655 PP

  == domain 6  score: 18.1 bits;  conditional E-value: 2.7e-06
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 ++++  gs+y+k+g++e A++++++al
  KKY15907.1 323 KMWQAVGSCYSKMGRHEPAIKSLKRAL 349
                 789**********************97 PP

  == domain 7  score: 12.1 bits;  conditional E-value: 0.00023
                 CHHHHHHHHHHHTT-HHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyy 24 
                 e +y+++++y+klgd++   ey+
  KKY15907.1 397 ETLYQIAQLYEKLGDMDTTAEYM 419
                 789*************9766666 PP

  == domain 8  score: -0.1 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyeka 27 
                 a ++l++  + +g+++ A+  +e+ 
  KKY15907.1 479 ARLWLARWAMRTGELDRAETLCEEL 503
                 66778888999********999875 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.2     0.046        36       5      24 ..      18      37 ..      14      38 .. 0.90
   2 !    8.5   0.0    0.0031       2.4       2      33 ..     153     184 ..     152     185 .. 0.92
   3 !    8.3   0.0    0.0036       2.8       2      33 ..     221     252 ..     220     253 .. 0.88
   4 !   12.4   0.0   0.00017      0.13       3      33 ..     256     286 ..     255     287 .. 0.92
   5 !   13.9   2.8   5.7e-05     0.045       2      33 ..     289     320 ..     288     321 .. 0.95
   6 !   10.5   0.0    0.0007      0.54       4      28 ..     325     349 ..     322     351 .. 0.92
   7 ?    5.2   0.0     0.034        26       1      16 [.     396     411 ..     396     414 .. 0.90
   8 ?    6.4   0.1     0.014        11       4      28 ..     480     504 ..     477     505 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.046
       TPR_2  5 ynlGlayyklgdyeeAleaf 24
                y l+++y+   +y+++++ f
  KKY15907.1 18 YLLAKSYFDTREYDRCAAVF 37
                89*************99877 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0031
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 e+ly+ +l++y+++d+e A e f+  l  dP+
  KKY15907.1 153 EYLYESALLHYHAKDFETASEIFNDLLVTDPH 184
                 789********************999988885 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0036
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 e ++  G+ y  + ++e+A+ +f++Al ld n
  KKY15907.1 221 ETCCVVGNYYSLKSEHEKAVMYFRRALTLDRN 252
                 566778999999*****************987 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 0.00017
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 a+  +G  y+++++   A+e +++A+  + +
  KKY15907.1 256 AWTLMGHEYIEMKNTHAAIESYRRAVDVNRK 286
                 7999*********************998876 PP

  == domain 5  score: 13.9 bits;  conditional E-value: 5.7e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 +a+y lG+ay+ l+    Al ++++A +l P 
  KKY15907.1 289 RAWYGLGQAYEVLDMSFYALFYYQRAAALRPY 320
                 69***************************995 PP

  == domain 6  score: 10.5 bits;  conditional E-value: 0.0007
       TPR_2   4 lynlGlayyklgdyeeAleafekAl 28 
                 + + G +y k+g++e A++ +++Al
  KKY15907.1 325 WQAVGSCYSKMGRHEPAIKSLKRAL 349
                 8889********************9 PP

  == domain 7  score: 5.2 bits;  conditional E-value: 0.034
       TPR_2   1 aealynlGlayyklgd 16 
                 +e ly+++++y+klgd
  KKY15907.1 396 PETLYQIAQLYEKLGD 411
                 689************9 PP

  == domain 8  score: 6.4 bits;  conditional E-value: 0.014
       TPR_2   4 lynlGlayyklgdyeeAleafekAl 28 
                   +l++ +++ g++++A+ ++e+  
  KKY15907.1 480 RLWLARWAMRTGELDRAETLCEELC 504
                 5689*****************9975 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       2.4   1.9e+03       4      24 ..      17      37 ..      14      38 .. 0.87
   2 !   11.1   0.0   0.00078      0.61       4      41 ..     155     192 ..     151     195 .. 0.87
   3 !    9.9   0.0    0.0019       1.5      13      42 ..     232     261 ..     226     262 .. 0.87
   4 !   17.5   0.0   6.5e-06    0.0051       3      43 ..     256     296 ..     254     297 .. 0.95
   5 ?    3.1   0.0      0.29   2.2e+02      20      40 ..     307     327 ..     307     331 .. 0.86
   6 !    8.9   0.0    0.0038         3       1      28 [.     322     349 ..     322     356 .. 0.92
   7 ?    4.1   0.0      0.13     1e+02       1      21 [.     396     416 ..     396     420 .. 0.84
   8 !   14.9   0.4   4.4e-05     0.034       2      38 ..     478     514 ..     477     518 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 2.4
      TPR_14  4 llalaeallalGdpdeAiall 24
                 ++la+ ++  +++d+ +a++
  KKY15907.1 17 KYLLAKSYFDTREYDRCAAVF 37
                5899***********999876 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00078
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlll 41 
                 l++ a +++++ d+++A ++++++l ++P  ++a+ ++
  KKY15907.1 155 LYESALLHYHAKDFETASEIFNDLLVTDPHRLDALDHY 192
                 667788899*********************99998776 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.0019
      TPR_14  13 alGdpdeAiallrralalaPddaeawllla 42 
                    ++++A+ ++rral l+ +++ aw+l++
  KKY15907.1 232 LKSEHEKAVMYFRRALTLDRNFLSAWTLMG 261
                 55689*********************9986 PP

  == domain 4  score: 17.5 bits;  conditional E-value: 6.5e-06
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 a+ ++++ + +  ++ +Ai+ +rra++ + +d +aw+ l+q
  KKY15907.1 256 AWTLMGHEYIEMKNTHAAIESYRRAVDVNRKDYRAWYGLGQ 296
                 89999**********************************98 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.29
      TPR_14  20 AiallrralalaPddaeawll 40 
                 A+ +++ra al P d+  w +
  KKY15907.1 307 ALFYYQRAAALRPYDPKMWQA 327
                 6679************99976 PP

  == domain 6  score: 8.9 bits;  conditional E-value: 0.0038
      TPR_14   1 peallalaeallalGdpdeAiallrral 28 
                 p++++a ++ +   G+++ Ai+ l+ral
  KKY15907.1 322 PKMWQAVGSCYSKMGRHEPAIKSLKRAL 349
                 67899**********************8 PP

  == domain 7  score: 4.1 bits;  conditional E-value: 0.13
      TPR_14   1 peallalaeallalGdpdeAi 21 
                 pe l+++a++++ lGd d+ +
  KKY15907.1 396 PETLYQIAQLYEKLGDMDTTA 416
                 7899************88655 PP

  == domain 8  score: 14.9 bits;  conditional E-value: 4.4e-05
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeaw 38 
                 +a+l la+  ++ G++d+A++l++++++++ + +ea 
  KKY15907.1 478 KARLWLARWAMRTGELDRAETLCEELCQDGVEVEEAK 514
                 5899************************998888776 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0085       6.6       1      36 [.     227     262 ..     227     264 .. 0.87
   2 !   28.6   0.3     1e-09     8e-07       1      39 [.     261     299 ..     261     301 .. 0.97
   3 ?    3.6   0.0      0.07        55      17      42 .]     311     336 ..     307     336 .. 0.90
   4 ?    4.2   0.0     0.046        36       4      21 ..     332     349 ..     329     349 .. 0.88
   5 ?    2.5   0.0      0.15   1.2e+02      27      42 .]     395     410 ..     395     410 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0085
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGl 36 
                 G+ y  + + e+A+  +++Al ld ++ +a+  +G+
  KKY15907.1 227 GNYYSLKSEHEKAVMYFRRALTLDRNFLSAWTLMGH 262
                 5666678899*******************9999985 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 1e-09
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayy 39 
                 G++y e  +  +Aie+Y++A++ + ++ +a+y+LG+ay 
  KKY15907.1 261 GHEYIEMKNTHAAIESYRRAVDVNRKDYRAWYGLGQAYE 299
                 899***********************************6 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.07
      TPR_11  17 YkkAlkldPdnaeayynLGlayykqG 42 
                 Y++A +l+P ++  + + G  y k+G
  KKY15907.1 311 YQRAAALRPYDPKMWQAVGSCYSKMG 336
                 ************99999998888887 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.046
      TPR_11   4 yyeqGkyeeAieaYkkAl 21 
                 y + G+ e Ai+++k+Al
  KKY15907.1 332 YSKMGRHEPAIKSLKRAL 349
                 6689*************8 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.15
      TPR_11  27 naeayynLGlayykqG 42 
                 ++e +y ++++y k+G
  KKY15907.1 395 DPETLYQIAQLYEKLG 410
                 799***********99 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0007      0.54      22      48 ..      13      39 ..       7      50 .. 0.81
   2 !    9.6   0.0    0.0014       1.1      24      49 ..     153     178 ..     139     202 .. 0.80
   3 !   13.7   0.3   7.3e-05     0.057      20      80 ..     217     278 ..     203     302 .. 0.54
   4 !    9.5   0.3    0.0014       1.1       8      49 ..     307     348 ..     306     355 .. 0.94
   5 ?    1.9   0.0      0.34   2.7e+02      22      51 ..     395     425 ..     387     437 .. 0.79
   6 ?    2.7   0.0      0.19   1.5e+02      22      49 ..     476     503 ..     472     513 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0007
                -HHHHHHHHHHHHHTT-HHHHHHHHHC CS
      ANAPC3 22 spedayllAlclylngqykrAyellrk 48
                 + + yllA++++ + +y+r+  ++ +
  KKY15907.1 13 KEASKYLLAKSYFDTREYDRCAAVFLP 39
                567889***************998765 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0014
                 HHHHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  24 edayllAlclylngqykrAyellrka 49 
                 e +y  Al +y+++++++A e+++++
  KKY15907.1 153 EYLYESALLHYHAKDFETASEIFNDL 178
                 556667****************9987 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 7.3e-05
                 H--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  20 tespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 + +pe     +  + l +++++A  ++r+a  l+ + l ++ l+++ ++++k+ + Ai  + 
  KKY15907.1 217 KFRPETCCVVGNYYSLKSEHEKAVMYFRRAlTLDRNFLSAWTLMGHEYIEMKNTHAAIESYR 278
                 55555555555555555555555555555555555555555555555555555555554433 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 0.0014
                 HHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3   8 AiflaerllaaetespedayllAlclylngqykrAyellrka 49 
                 A+f++ r+ a  +++p+   + + c+ ++g+++ A++ l++a
  KKY15907.1 307 ALFYYQRAAALRPYDPKMWQAVGSCYSKMGRHEPAIKSLKRA 348
                 99***********************************99998 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.34
                 -HHHHHHHHHHHHHTT-HHHHHHHHHCT.SH CS
      ANAPC3  22 spedayllAlclylngqykrAyellrka.kl 51 
                 +pe +y  A+ + ++g+ ++  e+ + +  +
  KKY15907.1 395 DPETLYQIAQLYEKLGDMDTTAEYMEVTvAQ 425
                 7888999999999999999998888777544 PP

  == domain 6  score: 2.7 bits;  conditional E-value: 0.19
                 -HHHHHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  22 spedayllAlclylngqykrAyellrka 49 
                  ++++++lA    ++g+ +rA +l++++
  KKY15907.1 476 TSKARLWLARWAMRTGELDRAETLCEEL 503
                 5678999999999999999999999887 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1       1.9   1.5e+03       1      20 [.      18      37 ..      18      38 .. 0.84
   2 ?    3.3   0.0      0.17   1.3e+02      36      65 ..     154     183 ..     152     198 .. 0.83
   3 ?   -0.7   0.0         3   2.3e+03      41      63 ..     227     249 ..     226     252 .. 0.78
   4 !   25.8   0.0   1.6e-08   1.2e-05       3      46 ..     260     300 ..     258     302 .. 0.93
   5 !   11.2   0.5   0.00059      0.46      19      66 ..     310     354 ..     307     356 .. 0.89
   6 !    7.3   0.0    0.0099       7.7      35      60 ..     478     503 ..     469     507 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1.9
      TPR_16  1 lalaraalragdyddAaaal 20
                + la+++++ ++yd+ aa++
  KKY15907.1 18 YLLAKSYFDTREYDRCAAVF 37
                679999***99999877765 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.17
      TPR_16  36 AllllgdaalrqgrlaeAaalyraalraap 65 
                  l++++++++++++++ A + ++ +l  +p
  KKY15907.1 154 YLYESALLHYHAKDFETASEIFNDLLVTDP 183
                 689999999999999999877777776666 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 3
      TPR_16  41 gdaalrqgrlaeAaalyraalra 63 
                 g+ +  ++++++A+ ++r+al+ 
  KKY15907.1 227 GNYYSLKSEHEKAVMYFRRALTL 249
                 56677889999999999999865 PP

  == domain 4  score: 25.8 bits;  conditional E-value: 1.6e-08
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalr 46 
                 +++++++ ++  +A++ +++a++ +     +++A+++lg+a+ +
  KKY15907.1 260 MGHEYIEMKNTHAAIESYRRAVDVN---RKDYRAWYGLGQAYEV 300
                 79***********************...88899********986 PP

  == domain 5  score: 11.2 bits;  conditional E-value: 0.00059
      TPR_16  19 aleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                 ++++a +++p +P    ++ + g ++ + gr+++A+  +++al a+++
  KKY15907.1 310 YYQRAAALRPYDPK---MWQAVGSCYSKMGRHEPAIKSLKRALIAGAY 354
                 69*******77777...************************9977765 PP

  == domain 6  score: 7.3 bits;  conditional E-value: 0.0099
      TPR_16  35 eAllllgdaalrqgrlaeAaalyraa 60 
                  A+l+l++ a r g+l++A+ l++++
  KKY15907.1 478 KARLWLARWAMRTGELDRAETLCEEL 503
                 69*******************99986 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1      0.19   1.5e+02       4      22 ..      18      36 ..      14      37 .. 0.84
   2 !   11.0   0.0    0.0007      0.55       3      31 ..     155     183 ..     153     184 .. 0.90
   3 ?    2.5   0.0      0.37   2.9e+02      10      27 ..     229     247 ..     228     250 .. 0.81
   4 ?    4.7   0.0     0.072        56       9      28 ..     263     282 ..     256     283 .. 0.85
   5 ?    1.8   1.6      0.58   4.5e+02       2      28 ..     290     316 ..     289     319 .. 0.83
   6 ?    4.2   0.0       0.1        79       7      26 ..     329     348 ..     328     349 .. 0.90
   7 !   12.5   0.2   0.00024      0.19       2      25 ..     398     421 ..     397     425 .. 0.89
   8 ?    4.9   0.1     0.064        50       2      27 ..     479     504 ..     478     506 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.19
                HHHHHHHHHHHHHHHHHHH CS
       TPR_6  4 yklalsyrklgdtdkAlea 22
                y+la+sy+ + ++d+  + 
  KKY15907.1 18 YLLAKSYFDTREYDRCAAV 36
                99*******88**998776 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0007
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlikeYP 31 
                 ly  al+++ ++d ++A e++++l+   P
  KKY15907.1 155 LYESALLHYHAKDFETASEIFNDLLVTDP 183
                 9*********99************97766 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.37
                 HHHHH.HHHHHHHHHHHHH CS
       TPR_6  10 yrklg.dtdkAlealerli 27 
                 y++l+ +++kA+ +++r +
  KKY15907.1 229 YYSLKsEHEKAVMYFRRAL 247
                 67755599********987 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.072
                 HHHHHHHHHHHHHHHHHHHH CS
       TPR_6   9 syrklgdtdkAlealerlik 28 
                  y+++++t +A+e ++r ++
  KKY15907.1 263 EYIEMKNTHAAIESYRRAVD 282
                 599999***********875 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.58
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlik 28 
                 A y l+++y+ l+ +  Al +++r   
  KKY15907.1 290 AWYGLGQAYEVLDMSFYALFYYQRAAA 316
                 89********99777799999999765 PP

  == domain 6  score: 4.2 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAlealerl 26 
                 + +y k+g+++ A++ l+r 
  KKY15907.1 329 GSCYSKMGRHEPAIKSLKRA 348
                 78**************9986 PP

  == domain 7  score: 12.5 bits;  conditional E-value: 0.00024
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealer 25 
                  ly++a++y+klgd d+  e++e 
  KKY15907.1 398 TLYQIAQLYEKLGDMDTTAEYMEV 421
                 59******************9986 PP

  == domain 8  score: 4.9 bits;  conditional E-value: 0.064
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerli 27 
                 A ++la+   ++g+ d+A ++ e+l 
  KKY15907.1 479 ARLWLARWAMRTGELDRAETLCEELC 504
                 89****9999999*****99999885 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       1.4   1.1e+03      26      44 ..      15      33 ..       7      38 .. 0.83
   2 ?    1.8   0.0      0.44   3.4e+02      25      57 ..     150     184 ..     139     190 .. 0.74
   3 ?    1.3   0.0      0.65   5.1e+02       4      40 ..     165     201 ..     162     216 .. 0.78
   4 ?    5.8   0.0     0.026        20       7      45 ..     236     274 ..     233     275 .. 0.92
   5 !   13.2   0.0   0.00012     0.097       2      35 ..     265     298 ..     264     302 .. 0.94
   6 !   12.6   0.0   0.00019      0.15      10      52 ..     307     349 ..     307     353 .. 0.95
   7 ?    1.8   0.0      0.45   3.5e+02      24      42 ..     395     413 ..     386     420 .. 0.90
   8 !    9.3   0.1    0.0021       1.6      26      50 ..     478     502 ..     474     506 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.4
      TPR_19 26 earllLAeallalgqldeA 44
                + ++lLA+ ++ + ++d  
  KKY15907.1 15 ASKYLLAKSYFDTREYDRC 33
                56899**********9975 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.44
      TPR_19  25 aearllL..AeallalgqldeAealLdalpeedpd 57 
                 +++ +l+  A +++ +++++ A ++ ++l+  dp 
  KKY15907.1 150 GWLEYLYesALLHYHAKDFETASEIFNDLLVTDPH 184
                 55555556688889999999999999988877764 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.65
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgq 40 
                 ++d++ A +++  +l  dp+ ++a+  + ++l+ +g+
  KKY15907.1 165 AKDFETASEIFNDLLVTDPHRLDALDHYSNILYVMGN 201
                 5788888888888888888888887777777766665 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.026
      TPR_19   7 yaeAlalleqalqedpknaearllLAeallalgqldeAe 45 
                 ++ A+ ++++al+ d + + a+ l+   +++++++ +A+
  KKY15907.1 236 HEKAVMYFRRALTLDRNFLSAWTLMGHEYIEMKNTHAAI 274
                 78999****************************998887 PP

  == domain 5  score: 13.2 bits;  conditional E-value: 0.00012
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeal 35 
                 +++++  +A++ +++a + + k+ +a+++L +a+
  KKY15907.1 265 IEMKNTHAAIESYRRAVDVNRKDYRAWYGLGQAY 298
                 689999***************************9 PP

  == domain 6  score: 12.6 bits;  conditional E-value: 0.00019
      TPR_19  10 AlalleqalqedpknaearllLAeallalgqldeAealLdalp 52 
                 Al ++++a +  p ++  + +   ++ ++g+ + A++ L++++
  KKY15907.1 307 ALFYYQRAAALRPYDPKMWQAVGSCYSKMGRHEPAIKSLKRAL 349
                 899*************************************986 PP

  == domain 7  score: 1.8 bits;  conditional E-value: 0.45
      TPR_19  24 naearllLAeallalgqld 42 
                 ++e +++ A+++ +lg+ d
  KKY15907.1 395 DPETLYQIAQLYEKLGDMD 413
                 78999***********987 PP

  == domain 8  score: 9.3 bits;  conditional E-value: 0.0021
      TPR_19  26 earllLAeallalgqldeAealLda 50 
                  arl+LA+  + +g+ld Ae l+++
  KKY15907.1 478 KARLWLARWAMRTGELDRAETLCEE 502
                 79******************99886 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.14   1.1e+02      46      70 ..     153     177 ..     137     200 .. 0.74
   2 !    9.2   0.0    0.0019       1.5      52      76 ..     227     251 ..     222     252 .. 0.87
   3 ?    6.2   0.3     0.016        12       6      35 ..     257     286 ..     253     319 .. 0.64
   4 !   11.3   0.0   0.00041      0.32      49      72 ..     326     349 ..     289     351 .. 0.88
   5 !   11.4   0.0   0.00038       0.3      50      72 ..     327     349 ..     320     368 .. 0.72
   6 ?    2.6   0.0      0.21   1.6e+02      46      62 ..     397     413 ..     379     423 .. 0.70
   7 ?    2.6   0.1      0.22   1.7e+02       5      28 ..     479     502 ..     475     523 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.14
      TPR_12  46 ttlrnLgrlyralgryeeAlellee 70 
                 ++l+  + l++ ++++e A e++++
  KKY15907.1 153 EYLYESALLHYHAKDFETASEIFND 177
                 5566666777777777777777765 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0019
      TPR_12  52 grlyralgryeeAlelleealaiae 76 
                 g +y++  ++e+A+ ++++al +++
  KKY15907.1 227 GNYYSLKSEHEKAVMYFRRALTLDR 251
                 788999999***********99987 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.016
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarr 35 
                 ++ +++ + ++++ + A+e +++a+++ r+
  KKY15907.1 257 WTLMGHEYIEMKNTHAAIESYRRAVDVNRK 286
                 444555556666666666666666666654 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 0.00041
      TPR_12  49 rnLgrlyralgryeeAlelleeal 72 
                 ++ g +y+++gr+e A++ l++al
  KKY15907.1 326 QAVGSCYSKMGRHEPAIKSLKRAL 349
                 567999999999999999999997 PP

  == domain 5  score: 11.4 bits;  conditional E-value: 0.00038
      TPR_12  50 nLgrlyralgryeeAlelleeal 72 
                 + g +y+++gr+e A++ l++al
  KKY15907.1 327 AVGSCYSKMGRHEPAIKSLKRAL 349
                 45677777777777777777765 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.21
      TPR_12  46 ttlrnLgrlyralgrye 62 
                 +tl+ +++ly++lg+ +
  KKY15907.1 397 ETLYQIAQLYEKLGDMD 413
                 45666666666666544 PP

  == domain 7  score: 2.6 bits;  conditional E-value: 0.22
      TPR_12   5 alnnlaavlrrlgrydeAlellek 28 
                 a   la   +r g++d A++l+e+
  KKY15907.1 479 ARLWLARWAMRTGELDRAETLCEE 502
                 44459****************997 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.7   1.3e+03       4      17 ..      19      32 ..      18      37 .. 0.89
   2 !    8.5   0.0    0.0028       2.2       2      32 ..     223     251 ..     222     255 .. 0.79
   3 ?    2.7   0.0       0.2   1.5e+02       9      30 ..     264     283 ..     256     289 .. 0.74
   4 ?   -1.1   0.0       3.3   2.5e+03      21      34 ..     310     321 ..     307     323 .. 0.67
   5 !    9.0   0.0    0.0019       1.5       5      30 ..     328     354 ..     325     363 .. 0.87
   6 !    8.8   0.0    0.0023       1.8       1      22 [.     398     419 ..     398     428 .. 0.86
   7 ?    6.1   0.0     0.017        13       5      24 ..     483     502 ..     483     510 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.7
       TPR_7  4 nLarlysrlGdyee 17
                 La  y++ ++y++
  KKY15907.1 19 LLAKSYFDTREYDR 32
                69**********97 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0028
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdp 32 
                 ++  ++ ys   ++e+A+ ++++  alt d 
  KKY15907.1 223 CCVVGNYYSLKSEHEKAVMYFRR--ALTLDR 251
                 5666899999*************..555544 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.2
       TPR_7   9 ysrlGdyeeAielyeqsLaltk 30 
                 y ++ ++  Aie y++  a++ 
  KKY15907.1 264 YIEMKNTHAAIESYRR--AVDV 283
                 777789999*******..7664 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 3.3
       TPR_7  21 lyeqsLaltkdped 34 
                 +y++  a + +p+d
  KKY15907.1 310 YYQR--AAALRPYD 321
                 7888..66666665 PP

  == domain 5  score: 9.0 bits;  conditional E-value: 0.0019
       TPR_7   5 LarlysrlGdyeeAielyeqsL.altk 30 
                  +++ys++G++e Ai+ ++++L a ++
  KKY15907.1 328 VGSCYSKMGRHEPAIKSLKRALiAGAY 354
                 599*****************9988875 PP

  == domain 6  score: 8.8 bits;  conditional E-value: 0.0023
       TPR_7   1 aLlnLarlysrlGdyeeAiely 22 
                 +L+++a+ly++lGd+++ +e+ 
  KKY15907.1 398 TLYQIAQLYEKLGDMDTTAEYM 419
                 799************9866665 PP

  == domain 7  score: 6.1 bits;  conditional E-value: 0.017
       TPR_7   5 LarlysrlGdyeeAielyeq 24 
                 Lar+  r G+ ++A++l+e+
  KKY15907.1 483 LARWAMRTGELDRAETLCEE 502
                 89999*************98 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1      0.13     1e+02      34      65 ..     157     188 ..     152     192 .. 0.64
   2 ?    6.4   0.1     0.012       9.6       9      62 ..     234     287 ..     228     292 .. 0.90
   3 !   16.8   0.0   7.1e-06    0.0055      14      56 ..     307     349 ..     294     365 .. 0.90
   4 ?    3.2   0.0      0.12        97      28      58 ..     395     425 ..     393     448 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.13
       TPR_9  34 dRGlllaqlGclsaAladLeaylalapdapda 65 
                 + +ll+++  ++++A + ++  l  +p++ da
  KKY15907.1 157 ESALLHYHAKDFETASEIFNDLLVTDPHRLDA 188
                 56666666666666666666666666665554 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.012
       TPR_9   9 edweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapda 62 
                  ++e+a  +  r l l+ +  + +   G  + ++ +++aA++   ++++++ ++
  KKY15907.1 234 SEHEKAVMYFRRALTLDRNFLSAWTLMGHEYIEMKNTHAAIESYRRAVDVNRKD 287
                 6789999*****************************************998755 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 7.1e-06
       TPR_9  14 alavverllllaPddpeerrdRGlllaqlGclsaAladLeayl 56 
                 al +++r  +l P dp  +   G ++ ++G+ + A++ L ++l
  KKY15907.1 307 ALFYYQRAAALRPYDPKMWQAVGSCYSKMGRHEPAIKSLKRAL 349
                 78899***********************************998 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.12
       TPR_9  28 dpeerrdRGlllaqlGclsaAladLeaylal 58 
                 dpe ++  ++l+++lG++ + ++ +e  +a+
  KKY15907.1 395 DPETLYQIAQLYEKLGDMDTTAEYMEVTVAQ 425
                 68889999***********999999877765 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.49   3.8e+02       1      33 [.     242     274 ..     232     275 .. 0.85
   2 !    7.9   0.0    0.0058       4.6       2      24 ..     277     299 ..     276     307 .. 0.91
   3 !    8.0   0.0    0.0052         4       1      30 [.     310     339 ..     310     343 .. 0.93
   4 ?    5.5   0.0     0.033        26      12      30 ..     395     413 ..     394     418 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.49
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 ++++al ld n   a+++++  + + +++  A+
  KKY15907.1 242 YFRRALTLDRNFLSAWTLMGHEYIEMKNTHAAI 274
                 578999999999999999999888888887776 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0058
      TPR_17   2 ylkaleldPnnadaynnLAelll 24 
                 y++a++ + ++  a++ L+++++
  KKY15907.1 277 YRRAVDVNRKDYRAWYGLGQAYE 299
                 99*******************97 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0052
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlm 30 
                 +y++a++l P +++ ++  + +++k G+++
  KKY15907.1 310 YYQRAAALRPYDPKMWQAVGSCYSKMGRHE 339
                 6*************************9875 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.033
      TPR_17  12 nadaynnLAelllknGdlm 30 
                 +++ +++ A+l++k+Gd +
  KKY15907.1 395 DPETLYQIAQLYEKLGDMD 413
                 7899************944 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.2   9.4e+02     140     164 ..      82     106 ..      76     111 .. 0.83
   2 !   16.2   4.5   5.7e-06    0.0045     118     250 ..     194     325 ..     123     328 .. 0.72
   3 !    6.6   0.0    0.0052         4     145     173 ..     321     349 ..     316     353 .. 0.93
   4 ?    3.2   0.0     0.055        43     106     137 ..     392     423 ..     376     435 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.2
      TPR_15 140 eaaeqsaafllaraelyrqegqtda 164
                 ++++q ++fl+++a++ + e ++d+
  KKY15907.1  82 PKLSQKSLFLALYARYMSGEKRKDE 106
                 6789999********9999888775 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 5.7e-06
      TPR_15 118 ellerakdydriaellksleeeeaaeqsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkara...esd 213
                 ++l+ +++ +++  l + ++++++++  +    +++++y+ ++++++A+  +r+Al+l+ +  ++   +   +i+++++    ++++ ++++    ++d
  KKY15907.1 194 NILYVMGNRPQLSFLAQLATATDKFR--PETCCVVGNYYSLKSEHEKAVMYFRRALTLDRNFLSAWTLMGHEYIEMKNTH---AAIESYRRAVdvnRKD 287
                 44444555555443333344444444..445568899*********************9994444444446677777777...7******8889999** PP

      TPR_15 214 asLwgplaaAlllLgrpkkALeylrkqakenrkdp.lw 250
                  + w  l+ A+  L  +  AL y+++ a+ ++ dp +w
  KKY15907.1 288 YRAWYGLGQAYEVLDMSFYALFYYQRAAALRPYDPkMW 325
                 ********************************999445 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0052
      TPR_15 145 saafllaraelyrqegqtdaAlrdyreAl 173
                 ++ +++a+++ y++ g+++ A++ +++Al
  KKY15907.1 321 DPKMWQAVGSCYSKMGRHEPAIKSLKRAL 349
                 799*************************9 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.055
      TPR_15 106 rfrsprlLssalellerakdydriaellksle 137
                 +  +p+ L++  +l+e+++d+d++ae ++   
  KKY15907.1 392 KLLDPETLYQIAQLYEKLGDMDTTAEYMEVTV 423
                 66689999999999999999999999888743 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.086        67       9      31 ..     227     249 ..     222     252 .. 0.90
   2 ?    1.5   0.0      0.38     3e+02       9      33 ..     261     285 ..     258     286 .. 0.82
   3 ?    1.2   0.0      0.47   3.7e+02      12      29 ..     332     349 ..     329     351 .. 0.91
   4 !    7.2   0.0     0.006       4.7       5      28 ..     480     503 ..     476     512 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.086
      TPR_10   9 analrqrgrydeAealleealai 31 
                 +n+++   ++++A+ ++++al +
  KKY15907.1 227 GNYYSLKSEHEKAVMYFRRALTL 249
                 89999999************976 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.38
      TPR_10   9 analrqrgrydeAealleealairr 33 
                 ++ + ++++ ++A + +++a+++ r
  KKY15907.1 261 GHEYIEMKNTHAAIESYRRAVDVNR 285
                 6668889999999999999999876 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.47
      TPR_10  12 lrqrgrydeAealleeal 29 
                 ++++gr++ A + l++al
  KKY15907.1 332 YSKMGRHEPAIKSLKRAL 349
                 899*********999998 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.006
      TPR_10   5 lnNLanalrqrgrydeAealleea 28 
                 +  La+   ++g++d+Ae l+ee 
  KKY15907.1 480 RLWLARWAMRTGELDRAETLCEEL 503
                 5689******************95 PP

>> MM_CoA_mutase  Methylmalonyl-CoA mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.8e-05     0.037      12      73 ..     451     509 ..     444     517 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.8e-05
  MM_CoA_mutase  12 YtaedleekklgeslPGefPftRGvkatmyrgrpWtirqyagfstaeetnerykklLeaGqt 73 
                    +++ed  +    + +PGe Pf  Gv at  + r W  r  +  ++  ++ +  ++l + G++
     KKY15907.1 451 FSDEDA-D--GDAPVPGEEPFGTGVTATTSKARLWLARWAMRTGELDRAETLCEELCQDGVE 509
                    566665.2..35679*****************************999999999988888875 PP

>> DUF3856  Domain of Unknown Function (DUF3856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.82   6.4e+02      79      99 ..     237     257 ..     221     286 .. 0.48
   2 ?    9.7   0.0    0.0011      0.87      64     126 ..     290     348 ..     286     363 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.82
                 HHHHHHHHHH--TTSTHHHHH CS
     DUF3856  79 dkalryfnrrGeleqdeGklW 99 
                 +ka+ yf r   l+++  + W
  KKY15907.1 237 EKAVMYFRRALTLDRNFLSAW 257
                 555555555544444333333 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0011
                 HHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
     DUF3856  64 alaklgrydealesadkalryfnrrGeleqdeGklWiaavfsravaleelGrkdealkafrma 126
                 a+ +lg+  e l  +  al y+ r   l+  + k+W a+    + +++++Gr++ a+k+++ a
  KKY15907.1 290 AWYGLGQAYEVLDMSFYALFYYQRAAALRPYDPKMWQAV----GSCYSKMGRHEPAIKSLKRA 348
                 788999999***************************886....788999*********99987 PP

>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.9   3.1e+03      23      57 ..     398     429 ..     397     459 .. 0.68
   2 ?   10.4   0.0    0.0004      0.31      63     101 ..     484     522 ..     469     528 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.9
        ThrE  23 tmkriaralgleevevfvtptsiivsv.deeeesit 57 
                 t+ +ia+ ++    ++++t + + v+v +e++   +
  KKY15907.1 398 TLYQIAQLYEK-LGDMDTTAEYMEVTVaQENG---S 429
                 67788888888.78999999999999933322...2 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0004
        ThrE  63 rsrgvnleklsevnelsreiaageisleeaeerLdeIer 101
                  +  + ++ l++ ++l++e++++ +++eea++ L+eI +
  KKY15907.1 484 ARWAMRTGELDRAETLCEELCQDGVEVEEAKAGLREIRA 522
                 677889999****************************75 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0         4   3.1e+03      13      26 ..     165     178 ..     162     179 .. 0.84
   2 ?   -0.8   0.0       3.2   2.5e+03      10      25 ..     230     245 ..     222     248 .. 0.83
   3 ?    3.4   0.0      0.14   1.1e+02       3      21 ..     325     343 ..     323     349 .. 0.82
   4 ?    3.0   0.0      0.18   1.4e+02      12      31 .]     489     508 ..     485     508 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 4
         PPR  13 nGkleeAlelfkeM 26 
                 + ++e A e+f+++
  KKY15907.1 165 AKDFETASEIFNDL 178
                 7899*******975 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 3.2
         PPR  10 ycknGkleeAlelfke 25 
                 y+ + ++e+A+ +f++
  KKY15907.1 230 YSLKSEHEKAVMYFRR 245
                 7778899*****9986 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.14
         PPR   3 ynslIsgycknGkleeAle 21 
                 + ++ s+y+k G++e A++
  KKY15907.1 325 WQAVGSCYSKMGRHEPAIK 343
                 777789********98887 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.18
         PPR  12 knGkleeAlelfkeMkekGi 31 
                 + G+l+ A+ l +e+ ++G+
  KKY15907.1 489 RTGELDRAETLCEELCQDGV 508
                 78*************99996 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2       7.1   5.6e+03       5      20 ..      18      33 ..      17      34 .. 0.86
   2 ?    9.5   0.1    0.0013         1       2      37 ..     153     188 ..     152     190 .. 0.92
   3 ?    1.1   0.0      0.56   4.3e+02      16      40 ..     235     259 ..     229     271 .. 0.83
   4 ?   -1.6   0.0       3.8     3e+03       2      25 ..     397     420 ..     397     427 .. 0.80
   5 ?   -0.8   0.0       2.2   1.7e+03      12      29 ..     488     505 ..     487     514 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 7.1
                HHHHHHHHHHT-HHHH CS
  Fis1_TPR_C  5 YylAlGhyklgeYseA 20
                Y+lA  ++  +eY+++
  KKY15907.1 18 YLLAKSYFDTREYDRC 33
                8999999999999986 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHHHT-HHHHHHHHHHHHHHTTS-HHH CS
  Fis1_TPR_C   2 eclYylAlGhyklgeYseArryvdalLeiEPenrQa 37 
                 e+lY  Al hy  +++++A +  + lL  +P    a
  KKY15907.1 153 EYLYESALLHYHAKDFETASEIFNDLLVTDPHRLDA 188
                 89*****************************87776 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.56
                 -HHHHHHHHHHHHHHTTS-HHHHHH CS
  Fis1_TPR_C  16 eYseArryvdalLeiEPenrQaqsL 40 
                 e+++A  y ++ L ++ ++  a +L
  KKY15907.1 235 EHEKAVMYFRRALTLDRNFLSAWTL 259
                 899***************9999888 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 3.8
                 HHHHHHHHHHHHHT-HHHHHHHHH CS
  Fis1_TPR_C   2 eclYylAlGhyklgeYseArryvd 25 
                 e lY++A  + klg+ ++  +y++
  KKY15907.1 397 ETLYQIAQLYEKLGDMDTTAEYME 420
                 679999999999999888777766 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 2.2
                 HHHT-HHHHHHHHHHHHH CS
  Fis1_TPR_C  12 yklgeYseArryvdalLe 29 
                 ++ ge ++A  +++ l++
  KKY15907.1 488 MRTGELDRAETLCEELCQ 505
                 5899*********99986 PP

>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.27   2.1e+02      24      35 ..     237     248 ..     229     250 .. 0.85
   2 ?    5.2   0.9     0.047        37      25      36 ..     306     317 ..     289     318 .. 0.76
   3 ?   -0.8   0.0       3.6   2.8e+03      18      35 ..     471     488 ..     468     489 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.27
        Sel1  24 ekAiewyekAAe 35 
                 ekA+ ++++A  
  KKY15907.1 237 EKAVMYFRRALT 248
                 89********76 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.047
        Sel1  25 kAiewyekAAeq 36 
                  A+ +y++AA++
  KKY15907.1 306 YALFYYQRAAAL 317
                 59********86 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 3.6
        Sel1  18 gvpkDpekAiewyekAAe 35 
                 gv +  +kA+ w+ + A+
  KKY15907.1 471 GVTATTSKARLWLARWAM 488
                 55555789*****99986 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.3    0.0016       1.3       3      26 .]     479     502 ..     478     502 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0016
       TPR_4   3 allaLArallalGdldeAraller 26 
                 a+l+LAr + ++G+ld+A++l e+
  KKY15907.1 479 ARLWLARWAMRTGELDRAETLCEE 502
                 89******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3657.40
//
Query:       KKY15908.1  [L=503]
Description: putative s-adenosylmethionine decarboxylase proenzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.1e-130  434.9   0.0   2.6e-130  434.6   0.0    1.1  1  SAM_decarbox  Adenosylmethionine decarboxylase
  ------ inclusion threshold ------
       0.14   12.1   0.0       0.64   10.0   0.0    2.0  2  DUF5356       Family of unknown function (DUF5356)


Domain annotation for each model (and alignments):
>> SAM_decarbox  Adenosylmethionine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  434.6   0.0  2.9e-134  2.6e-130       2     355 .]      37     488 ..      36     488 .. 0.88

  Alignments for each domain:
  == domain 1  score: 434.6 bits;  conditional E-value: 2.9e-134
                   ----SSEEEEEEEEEE-TTS-TT.....GGGGS-HHHHHHHHHHTT-EEEEEEE-SSEEEEEEE-XXEEEESSEEEEEEETTSXGGGGHHHHHHHHH CS
  SAM_decarbox   2 eaFEGpEKlLeiwfaeseeelekskkeegLrsisrekweeiLdlvkCkilsvvsseevdaYlLSeSSlFvfphkliLkTCGtttlLlclekllelae 98 
                   +aFEGpEKlLe+wf++s+++++  ++ +gL++++ e w+++Ldlv+Ck+ls+v+se+vdaYlLSeSS+FvfphkliLkTCGtttlL +l+++le+a+
    KKY15908.1  37 NAFEGPEKLLEVWFTSSAHDVSP-SNPKGLKAVDAEIWKDMLDLVNCKVLSIVESEDVDAYLLSESSMFVFPHKLILKTCGTTTLLCGLPRILEIAA 132
                   79*******************88.5678********************************************************************6 PP

                   HTTE................EEEEEEEEEESSSSGGGXXGGGCSHHHHHHHHHHHXTTXEEEEESETTSSEEEEEEE.............E...... CS
  SAM_decarbox  99 eelg..............aaevekvfYsrksFlfpekQksphrsfkeEvklLdklfengkayvvgkmnsdhwylYvaeeekeeeeeeakke...... 175
                    + g              aa +++vfYsrk+Flfp++Q++phrs+++Evk Ld+lf  g+ay++gkmn++hwylY++e+++  + +++ +e      
    KKY15908.1 133 LYGGfpkstapsgggiatAAPPYRVFYSRKNFLFPDRQRGPHRSWRDEVKSLDRLFLGGSAYMIGKMNGEHWYLYLTEPHTLLTPPASPQEgevete 229
                   666688888889999998999********************************************************776665555555559999** PP

                   ..............SSXXX.XXXEEEEEEEESXXHHHHGGGBXSSXE.................................................. CS
  SAM_decarbox 176 ..............eeeseeeedetleilMteLdpekakkFvkerks..........kee...............................edegha 217
                                   ++ e edetleilMt+L++e+ak+F+ +++s          + +                               ++egha
    KKY15908.1 230 tkilslptkvtdihGFSRPEAEDETLEILMTDLEEENAKQFYLDHASavaerqyhsfR-SsrdehidvfsntssdtgdivsdeeeaypeelTTEGHA 325
                   ***********9987788999*********************9999977766655550.05566677777778888888888999999999****** PP

                   HHHHHHHHHSHHHHSX.....TSEEEEEEXSSBXEEEEEEETT.......EEEEEEEEXXSTTXEEEEEEXXXX....SXXHHHHHHHHHHHXXSEE CS
  SAM_decarbox 218 lgkevteksgldkilp.....eaeidafaFepcGYSaNaivee......eayyTiHvTPeegfSYaSFEtnvplkeeskslkelikkvlkiFkPgkf 303
                   lg+ v+e++gl++i+p     e +ida++F pcG+SaN++ ++      ++y+T+HvTPe+++SYaSFEtnvp+++++ ++ ++i++v++iFkPg+f
    KKY15908.1 326 LGTVVSESCGLSNIYPkskypEGRIDAYQFYPCGFSANGVIPAhgvksrGHYFTVHVTPESHCSYASFETNVPASQNKGETIDIIDHVVDIFKPGRF 422
                   ****************9999999******************99999999************************************************ PP

                   EEEEEEXTTS........HHHHH.TTXXXS..............TEEEEEEEEEEEETEEEEEEEEE CS
  SAM_decarbox 304 svtlfaekeseeeekvlkeleas.klkklk..............gykrkdrivyelegyklvylsfe 355
                   +vtlf++k s +e++++ +l+a  + k l+              gy+r driv++l+gy+lv++++e
    KKY15908.1 423 TVTLFEAKPSIDEKAAA-DLDALhEIKALErqaarrhfkmdnikGYRRVDRIVHDLDGYDLVFRYYE 488
                   ********554433332.22222122222233444555555555*******************9996 PP

>> DUF5356  Family of unknown function (DUF5356)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       0.2   1.8e+03      69      97 ..     241     269 ..     231     283 .. 0.77
   2 ?   10.0   0.0   7.1e-05      0.64      67     112 ..     291     336 ..     288     348 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.2
     DUF5356  69 kVtVFaapekkaetvtkieeskrreelpk 97 
                  ++ F+ pe++ et+++  ++ ++e++++
  KKY15908.1 241 DIHGFSRPEAEDETLEILMTDLEEENAKQ 269
                 56789*********999998888876665 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 7.1e-05
     DUF5356  67 pnkVtVFaapekkaetvtkieeskrreelpkeadalarLvqaiael 112
                 ++++ VF+ +++++  + + ee+   eel++e +al+ +v++++ l
  KKY15908.1 291 DEHIDVFSNTSSDTGDIVSDEEEAYPEELTTEGHALGTVVSESCGL 336
                 789***************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.52
# Mc/sec: 2929.79
//
Query:       KKY15909.1  [L=784]
Description: putative histone-lysine n-methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-07   31.7   6.9    1.2e-07   31.7   6.9    2.0  2  AWS       AWS domain
    0.00022   21.6   0.1    0.00022   21.6   0.1    3.9  4  SET       SET domain
  ------ inclusion threshold ------
       0.15   12.2   3.2          3    8.1   4.5    2.6  2  YfhD      YfhD-like protein


Domain annotation for each model (and alignments):
>> AWS  AWS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   6.9     2e-11   1.2e-07       3      37 ..     436     471 ..     435     472 .. 0.91
   2 ?   -2.6   0.7      0.97   5.8e+03      23      28 ..     590     595 ..     588     599 .. 0.73

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 2e-11
         AWS   3 epsgcgsdCiNRmlliECteetCpcGe.rCqNqrfq 37 
                 e+ gc++dC NR++++EC+   C++G+ +C N+ f+
  KKY15909.1 436 ESTGCDEDCQNRIMFYECNDSNCSLGKkHCGNRNFA 471
                 578***********************648****996 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.97
         AWS  23 etCpcG 28 
                 ++C+cG
  KKY15909.1 590 QECRCG 595
                 478888 PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.19   1.1e+03      58      94 ..     173     209 ..     106     278 .. 0.65
   2 !   21.6   0.1   3.7e-08   0.00022       1     134 [.     496     566 ..     496     568 .. 0.86
   3 ?    2.9   0.1     0.021   1.3e+02     156     169 .]     567     580 ..     566     580 .. 0.90
   4 ?   -1.5   0.2      0.49   2.9e+03      49      92 ..     653     699 ..     606     753 .. 0.57

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.19
                 HHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  58 asastllqklakdqkqaekedtdaalkasskaesdln 94 
                 +++  l q +ak+ k++ + +++a++ka+ + + ++ 
  KKY15909.1 173 ENGAELKQPSAKELKEKAEIERQARYKAADDRATRRS 209
                 3344444445555555555555555555555555554 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 3.7e-08
                 SCEEEESSXBXTTXEEEEEE.ECCEECHHHHHHHHHH.......HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXT CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeyp.eeiiltkdeadksele.......aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaes 91 
                 G+Gv++++ ++++++i+ey  e  i+t++e++ ++         +yl+  +                                                
  KKY15909.1 496 GYGVRSNRTFRPNQIIVEYSgE--IITQEECEHRMRTtykdnshYYLMLFD------------------------------------------------ 544
                 9*******************55..77777777777777*****87777788................................................ PP

                 TTSXXXHCCCCCHCCCHEEEETEEEEEECCCGTTGGGCEEXSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  92 dlnaskpeagafsaiagysidaralksgngagplarflNHsCd 134
                                + ++id  a++ g+ a    rf+NHsC+
  KKY15909.1 545 ---------------SALVID--ATARGSIA----RFVNHSCE 566
                 ...............78899*..77******....*******6 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.021
                 SXBXTTEEEEEXTT CS
                 xxxxxxxxxxxxxx RF
         SET 156 rdIkkGeEltidYg 169
                 r I  G+Elt+dY+
  KKY15909.1 567 RGIMTGQELTYDYN 580
                 67999********7 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.49
                 GGSX...HHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTT CS
                 xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  49 laft...kelakasastllqklakdqkqaekedtdaalkasskaesd 92 
                 l ++   + +a  s+++  +k++++ +++     +++++ + +++ +
  KKY15909.1 653 LTAKskkQKRAGKSLTPVKSKTNGKVAKKVAGSPAKRNVSFASTKTS 699
                 22223445555555555555555555555555555555555555444 PP

>> YfhD  YfhD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.5    0.0005         3      34      58 ..     183     207 ..     182     208 .. 0.92
   2 ?   -1.8   0.0      0.62   3.7e+03      30      45 ..     511     526 ..     507     531 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0005
        YfhD  34 SkelADheDleAnaRakaAdaRakk 58 
                 +kel  ++++e +aR+kaAd Ra +
  KKY15909.1 183 AKELKEKAEIERQARYKAADDRATR 207
                 589999****************987 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.62
        YfhD  30 DvEfSkelADheDleA 45 
                  vE+S e+  +e+ e 
  KKY15909.1 511 IVEYSGEIITQEECEH 526
                 59*****988888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.50
# Mc/sec: 4679.35
//
Query:       KKY15910.1  [L=794]
Description: putative protein efr3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (794 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 5722.76
//
Query:       KKY15911.1  [L=485]
Description: hypothetical protein UCRPC4_g06098 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-22   80.6   0.0    2.1e-22   79.8   0.0    1.4  1  Methyltransf_32  Methyltransferase domain
  ------ inclusion threshold ------
       0.11   12.5   0.1       0.25   11.4   0.1    1.5  1  IPU_b_solenoid   Isopullulanase beta-solenoid repeat


Domain annotation for each model (and alignments):
>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0   2.4e-26   2.1e-22       1     158 []      12     247 ..      12     247 .. 0.87

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 2.4e-26
  Methyltransf_32   1 kKlheverlaelvakllkelakesgal..tvvDvGaGkgYLsfvlalkeke.yklkvvgidakeelvekaekraeklgkkfnkrlsfaelsiee 91 
                      kK+heve++a+ v++l++ +++e +++  ++vD+G+G+ YL+++la+     y+ +v++i+ ++++ e  +k++ + +  ++k+ +   ++ e 
       KKY15911.1  12 KKIHEVEKFARYVNRLTEVISEEFDDFigDIVDFGSGQNYLGRTLAS---PpYNKHVIAIERRHHVLEGGRKMDVHAK--LAKKEKILRNKKEW 100
                      8**************999986655544338*****************...66*******************9999988..53333333333222 PP

  Methyltransf_32  92 atssktltkkve.................................................................................a 104
                      +    +++++++                                                                                 +
       KKY15911.1 101 KR--LQKECESTpqippsggdsvtdrlsemilddgsggivseteneglsgrgrmtyiehdiqngylddildpgyscpepvnttatnepeqdshE 192
                      22..223344446788**************************************************************************9988 PP

  Methyltransf_32 105 eeekeeqeekesvdvligLHaCdtltdtalrlale.keakllvlvpCCyhelaee 158
                      e++++++e+++   ++i+LH C++l    lr  +  + + ++++++CCy++++e+
       KKY15911.1 193 ESTISSAENRRAGRMVISLHSCGNLVHHGLRSLVLnSSVSAVAMIGCCYNLMTER 247
                      88899999999********************98888****************985 PP

>> IPU_b_solenoid  Isopullulanase beta-solenoid repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   2.8e-05      0.25       6      23 ..     461     478 ..     457     480 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.8e-05
  IPU_b_solenoid   6 APivqfGWysRnltNitV 23 
                      P+ ++GW +Rnl  + V
      KKY15911.1 461 EPVFEYGWSPRNLVVVGV 478
                     59**********987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3315.49
//
Query:       KKY15912.1  [L=533]
Description: putative phd transcription [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-12   44.9  10.9    2.1e-11   43.5  10.9    1.8  1  PHD       PHD-finger


Domain annotation for each model (and alignments):
>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5  10.9   1.2e-15   2.1e-11       1      50 [.     137     184 ..     137     186 .. 0.94

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 1.2e-15
                 SBTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTH CS
         PHD   1 rCavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCk 50 
                 +C +C+k  d++  +v+CdgC++w+H kC+++++++ ++   +++C+kC 
  KKY15912.1 137 YC-ICRK-PDDGTPMVCCDGCDEWYHIKCVGLHKDEVNNLLVKYYCPKCI 184
                 69.****.***************************8888888*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       832  (0.0464053); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.49
# Mc/sec: 3296.63
//
Query:       KKY15913.1  [L=445]
Description: putative transcription initiation factor tfiid complex 60 kda subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-30  104.4   0.0    7.6e-30  103.1   0.0    1.8  1  TAF6_C    TAF6 C-terminal HEAT repeat domain
      5e-22   77.8   0.3    1.2e-21   76.6   0.1    1.8  2  TAF       TATA box binding protein associated factor (TAF)
    0.00079   19.8   0.2     0.0018   18.7   0.1    1.6  2  Histone   Core histone H2A/H2B/H3/H4


Domain annotation for each model (and alignments):
>> TAF6_C  TAF6 C-terminal HEAT repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.0   1.3e-33   7.6e-30       1      90 []     272     362 ..     272     362 .. 0.98

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 1.3e-33
      TAF6_C   1 vltcllakklgakseledhwaLRdfAAslLakilkkysssyktLkprvtrtllkvlldpkkslgtlyGallglaal.Geeavrklvlpnlk 90 
                 vltcl++++lg++  + dh++LRd+AAsl++ ++kkys+s+++Lk+r++r +lk +ldp+k++gt+yGa+lgl a+ G e+vr+lv+pnlk
  KKY15913.1 272 VLTCLIGRNLGSGIGALDHFDLRDLAASLIELLCKKYSKSSPNLKQRLARSCLKNFLDPNKPYGTHYGAILGLEAVgGAEVVRALVIPNLK 362
                 79**************************************************************************88***********96 PP

>> TAF  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.1     2e-25   1.2e-21       1      66 []       2      67 ..       2      67 .. 0.98
   2 ?   -3.7   0.0       2.5   1.5e+04      23      40 ..     409     426 ..     408     428 .. 0.73

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 2e-25
                S----HHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH- CS
         TAF  1 tsilpkesvkviAeslGitnLsdeaaalLaedveyrlkeivqeaakfmrhskRqkLtvaDvdsALr 66
                ts+++ + vk++A+s+G+tnL+ ++a++L  dveyrl  + +ea+k+m+h+kR++L ++D+ +ALr
  KKY15913.1  2 TSVWNPDNVKDVADSVGVTNLKPDVANALSRDVEYRLSMALEEAIKCMKHAKRTVLWSQDIAEALR 67
                579999***********************************************************9 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHHHHHHHH CS
         TAF  23 deaaalLaedveyrlkei 40 
                 +eaa+++ +++  ++ e 
  KKY15913.1 409 EEAAEEMRMQLIDKIGEL 426
                 788888888887777665 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1     3e-07    0.0018      84     130 ..      22      68 ..      10      69 .. 0.85
   2 ?   -3.2   0.0       1.7     1e+04      62      84 ..     184     206 ..     175     211 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3e-07
                 EXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHHH CS
     Histone  84 isaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArrl 130
                 +  +  +al   +E+ l   +eeA +++khaKR  + ++Di  A+rl
  KKY15913.1  22 LKPDVANALSRDVEYRLSMALEEAIKCMKHAKRTVLWSQDIAEALRL 68 
                 56677888899999999999**************************8 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.7
                 SXHHHHHHHHHHHH.TTSSSXEE CS
     Histone  62 iqklpfaRvvreivksekedlri 84 
                   + +f+ v++ +  +++e++r+
  KKY15913.1 184 ELQQYFSTVCQSVLDENSEEYRV 206
                 45567888888888878877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 2816.01
//
Query:       KKY15914.1  [L=470]
Description: putative c6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-25   89.6   0.0    2.4e-25   89.1   0.0    1.2  1  Fungal_trans  Fungal specific transcription factor domain
  ------ inclusion threshold ------
      0.012   15.7   0.2       0.42   10.8   0.0    2.6  2  Gal4_dimer    Gal4-like dimerisation domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.0   2.7e-29   2.4e-25       7     265 ..     195     450 ..     193     458 .. 0.88

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 2.7e-29
  Fungal_trans   7 nfhpqfpilhkpsflpkt......ssenssksayaspllllailalGalfsesetkesnssltses.qefiafplraeilihedfsspssslwilqs 96 
                   ++  ++ ++h+psf++k         +  ++++ ++  l+++++a+G+ fs  ++++ +++  ++   + ++++ + +  i  d +++++ l+ lq+
    KKY15914.1 195 DCCALMRFIHQPSFYEKLerlyntDPDHYTNADMKFLPLIYLVIAVGSMFSTADDNRLDADGYEKYiGQGYQYFNAGRQMI--DITDCRD-LTGLQT 288
                   56667889*************8888888888888999999******************99999987977777888999999..6666666.****** PP

  Fungal_trans  97 LlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlw 193
                    +l+ ++++++ + + ++ ++g+a+r + +lgLhrn s++         +e +++r+R++w +  +D ++  +lG p +l++++i++++P + +d+ 
    KKY15914.1 289 IMLMVIFLQATAKLSTCYAYVGIALRTCMRLGLHRNVSDNM------DFIE-QQERKRTFWLVKKMDSYVGAMLGLPQMLSEEDIDQEFPAEVNDEC 378
                   ***************************************87......6666.9999**************************************666 PP

  Fungal_trans 194 esddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlq.....seklswveeleraldnW 265
                   ++ +a      +     +      ++++ +L  il+k+++ ++ i+   + ++++       + ++++e+e+ l++W
    KKY15914.1 379 ITREAILAQPAG-----QFPLIRATNAHTRLTVILKKVVKYVYPIKGVQSSTNSSqnrgyMISHAKIQEIESDLQAW 450
                   666555555555.....7899999****************9999999999999999999967777777777777777 PP

>> Gal4_dimer  Gal4-like dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.7e-05      0.42       8      30 ..      33      55 ..      29      73 .. 0.91
   2 ?    1.9   0.0     0.028   2.5e+02      20      32 ..     358     370 ..     356     378 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.7e-05
  Gal4_dimer  8 VEsRvtqLEqlLrrllpeeDiDn 30
                +E R+ + E lLr +lp+ D+D 
  KKY15914.1 33 LEARLHKAEALLRVALPNVDLDD 55
                79******************995 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.028
  Gal4_dimer  20 rrllpeeDiDnlL 32 
                  ++l eeDiD++ 
  KKY15914.1 358 PQMLSEEDIDQEF 370
                 589*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 2961.92
//
Query:       KKY15915.1  [L=598]
Description: putative ph-response transcription factor pacc rim101 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.4e-06   26.2   5.6    2.5e-05   24.5   3.3    2.7  2  zf-H2C2_2     Zinc-finger double domain
    3.2e-05   24.1   2.8    3.2e-05   24.1   2.8    4.1  5  zf-C2H2       Zinc finger, C2H2 type
     0.0001   22.8   1.7     0.0001   22.8   1.7    3.4  4  zf-C2H2_4     C2H2-type zinc finger
     0.0028   17.6   1.3     0.0078   16.2   1.3    1.7  1  zf-C2H2_6     C2H2-type zinc finger
     0.0036   17.5   0.7     0.0036   17.5   0.7    1.8  2  zf-C2H2_jaz   Zinc-finger double-stranded RNA-binding
  ------ inclusion threshold ------
      0.022   15.4   6.1       0.21   12.3   2.0    2.4  2  zf-TRAF       TRAF-type zinc finger
      0.031   14.6   4.3      0.067   13.5   3.4    2.0  2  zf-C2H2_8     C2H2-type zinc ribbon
       0.38   11.2   3.1       0.49   10.8   0.6    2.3  2  RNA_pol_Rpc4  RNA polymerase III RPC4


Domain annotation for each model (and alignments):
>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   3.3   1.1e-08   2.5e-05       3      26 .]      88     111 ..      86     111 .. 0.93
   2 ?    0.5   0.0      0.42   9.4e+02       1       9 [.     114     122 ..     114     126 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.1e-08
   zf-H2C2_2   3 rrHirkHtgekpyeCplCdkaFkt 26 
                 + Hir+H + kp++C++C+kaFk+
  KKY15915.1  88 TSHIRVHVPLKPHKCDFCGKAFKR 111
                 58********************96 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.42
   zf-H2C2_2   1 nLrrHirkH 9  
                 +L++H ++H
  KKY15915.1 114 DLKKHVKTH 122
                 69******9 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   2.4     0.045     1e+02       2      23 .]      35      59 ..      34      59 .. 0.92
   2 !    6.0   0.8    0.0081        18       3      23 .]      72      94 ..      70      94 .. 0.88
   3 !   24.1   2.8   1.4e-08   3.2e-05       1      23 []     100     122 ..     100     122 .. 0.98
   4 ?   -3.1   0.0       6.3   1.4e+04      13      23 .]     323     334 ..     323     334 .. 0.82
   5 ?   -3.6   0.1         8   1.8e+04      18      23 .]     373     378 ..     372     380 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.045
                EET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2  2 kCp..dCgksFkrksnLkrHirt.H 23
                kC   +C + +++ ++L  H +  H
  KKY15915.1 35 KCQwsGCQEHCPTAELLYDHVCErH 59
                79999***************99877 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0081
                ET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2  3 Cp..dCgksFkrksnLkrHirtH 23
                C    C  +   +++ ++Hir+H
  KKY15915.1 72 CAwgSCRTTTVKRDHITSHIRVH 94
                666679****************9 PP

  == domain 3  score: 24.1 bits;  conditional E-value: 1.4e-08
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 +kC+ Cgk Fkr+ +Lk+H +tH
  KKY15915.1 100 HKCDFCGKAFKRPQDLKKHVKTH 122
                 79********************9 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 6.3
                 HHHHHHHHHC.C CS
     zf-C2H2  13 ksnLkrHirt.H 23 
                 +s+L +Hi   H
  KKY15915.1 323 PSSLGAHIAQaH 334
                 688999*98877 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 8
                 HHHHCC CS
     zf-C2H2  18 rHirtH 23 
                 +H+  H
  KKY15915.1 373 SHMALH 378
                 477766 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.6         2   4.4e+03       2      20 ..      35      55 ..      34      55 .. 0.83
   2 ?   -0.9   0.4       1.9   4.2e+03       6      23 ..      77      94 ..      71      95 .. 0.63
   3 !   22.8   1.7   4.6e-08    0.0001       1      23 [.     100     122 ..     100     123 .. 0.96
   4 ?   -3.4   0.1         8   1.8e+04      16      23 ..     371     378 ..     363     378 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2
   zf-C2H2_4  2 kCpi..CgksFsskkaLlrHl 20
                kC +  C++ +++ + L +H+
  KKY15915.1 35 KCQWsgCQEHCPTAELLYDHV 55
                677777999999999999996 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.9
   zf-C2H2_4  6 CgksFsskkaLlrHlkth 23
                C+++   ++++ +H++ h
  KKY15915.1 77 CRTTTVKRDHITSHIRVH 94
                655555566667777766 PP

  == domain 3  score: 22.8 bits;  conditional E-value: 4.6e-08
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 +kC++Cgk F+++++L++H+kth
  KKY15915.1 100 HKCDFCGKAFKRPQDLKKHVKTH 122
                 69********************9 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 8
   zf-C2H2_4  16 LlrHlkth 23 
                 L +H++ h
  KKY15915.1 371 LPSHMALH 378
                 77899887 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.3   3.5e-06    0.0078       2      24 ..     100     122 ..     100     124 .. 0.96

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.5e-06
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkksH 24 
                 h+C+ C+k F+  q+L +H k+H
  KKY15915.1 100 HKCDFCGKAFKRPQDLKKHVKTH 122
                 9*********************9 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1         8   1.8e+04      18      24 ..      84      90 ..      82      91 .. 0.79
   2 !   17.5   0.7   1.6e-06    0.0036       2      24 ..     100     122 ..      99     123 .. 0.94

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 8
                 HCCTTSH CS
  zf-C2H2_jaz 18 dnHlkSK 24
                 + H++S+
   KKY15915.1 84 RDHITSH 90
                 6799997 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 1.6e-06
                  CBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkSK 24 
                  + C  C K Fk  ++l++H+k++
   KKY15915.1 100 HKCDFCGKAFKRPQDLKKHVKTH 122
                  89*******************98 PP

>> zf-TRAF  TRAF-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.024        53      37      57 ..      32      50 ..      28      54 .. 0.85
   2 ?   12.3   2.0   9.2e-05      0.21       7      60 .]      67     118 ..      62     118 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.024
                S--XXSSXXXXSXXXXXHHHH CS
     zf-TRAF 37 aevkCkfkevGCkekvkreal 57
                a++kC++  +GC+e++++ +l
  KKY15915.1 32 APLKCQW--SGCQEHCPTAEL 50
                7899***..*******99876 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 9.2e-05
                 SSEEE-TT--S-B.EEETTTCCCCCCTTSTTS--XXSSXXXXSXXXXXH.HHHHHT CS
     zf-TRAF   7 fapvpCpnecckk.kilRkdlkdHlekdCkkaevkCkfkevGCkekvkr.ealqkH 60 
                   +++C  ++c++ ++ R ++  H++   +  + kC f    C + +kr ++l+kH
  KKY15915.1  67 NLNLTCAWGSCRTtTVKRDHITSHIRVHVPLKPHKCDF----CGKAFKRpQDLKKH 118
                 56899*99988752699999******************....*9999983345555 PP

>> zf-C2H2_8  C2H2-type zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   3.4     3e-05     0.067       2      92 ..      36     125 ..      35     128 .. 0.93
   2 ?   -4.5   0.0         8   1.8e+04      45      54 ..     221     230 ..     217     239 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3e-05
   zf-C2H2_8   2 cssygcrlafpnvrelaqhlrvhlsptqslegklfrcstascaetfpsmqelvahtklhykpnryfkcencllrfrthrslfkhlhvcsdq 92 
                 c   gc+   p+++ l +h+  +   ++s++   + c+  sc  t    + + +h ++h  p +  kc+ c   f+  + l kh++  +d+
  KKY15915.1  36 CQWSGCQEHCPTAELLYDHVCERHVGRKSTNNLNLTCAWGSCRTTTVKRDHITSHIRVHV-PLKPHKCDFCGKAFKRPQDLKKHVKTHADD 125
                 78899**99**9999999999999999*******************************96.88999******************9988775 PP

  == domain 2  score: -4.5 bits;  conditional E-value: 8
   zf-C2H2_8  45 etfpsmqelv 54 
                 ++fp++q+ +
  KKY15915.1 221 NSFPAIQQRL 230
                 5666666543 PP

>> RNA_pol_Rpc4  RNA polymerase III RPC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.52   1.2e+03       7      19 ..     236     285 ..     231     374 .. 0.61
   2 ?   10.8   0.6   0.00022      0.49      26      95 ..     477     543 ..     405     585 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.52
  RNA_pol_Rpc4   7 fQfPpllPslkq.....................................k 19 
                   +Q+P+++Ps  +                                     +
    KKY15915.1 236 LQLPTIMPSGIPpayqpvsggsefpqsyslppmgnvknredltsidrilE 285
                   78999998843355555555555555555555555555554444444441 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00022
  RNA_pol_Rpc4  26 ddkseaesqsaekakaeeeskaekasgaeaeekkskkksskkkkkkkskalklkslpeGviGkLlvhkSG 95 
                    ++s+++++++ +++++ +sk++   + +a+++  ++++s+ ++++  +++   +   G+iG+++ + +G
    KKY15915.1 477 AESSDKTTANSPEESQASSSKTT---SPSATTEVANNEQSPPSSNGWLETTRFLDYLRGLIGQMKTRLDG 543
                   22222222222222222222211...11122222233333344444445555555555*******99888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4332.69
//
Query:       KKY15916.1  [L=323]
Description: putative dihydrodipicolinate synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-38  132.3   0.0    1.8e-38  131.9   0.0    1.0  1  DHDPS            Dihydrodipicolinate synthetase family
  ------ inclusion threshold ------
      0.083   12.8   0.0       0.14   12.1   0.0    1.3  1  AcetylCoA_hyd_C  Acetyl-CoA hydrolase/transferase C-terminal 


Domain annotation for each model (and alignments):
>> DHDPS  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.9   0.0     2e-42   1.8e-38      16     283 ..      25     304 ..      10     308 .. 0.85

  Alignments for each domain:
  == domain 1  score: 131.9 bits;  conditional E-value: 2e-42
                 TSSB-HHHHHHHHHHHHHCT-SEEEESSCCCTGGGS-HHHHHHHHHHHHHHHTTSSEEEEE---SSHHHHHHHHHCCCCCT-SEEEEE-.--SS---HH CS
       DHDPS  16 dgkldkealrklieflinkgvdglvvaGttGEsatlsteekeqlveiaveaakgripviagvGsnstseaiklakkaeeaGadgvlavt.PYYnkpsqe 113
                   +ld e+  +   +l + g+ glv++Gt  E+++l  ee+  l+  a+ a+++  p++ag Gs st++ ++l + a++aGa+ +l+++  Y+ k +++
  KKY15916.1  25 TDELDLESQTTYYSYLSKTGLAGLVILGTNAEAFLLTREERSTLIAAARAAVGETYPIMAGCGSHSTKQTLELIHDAHRAGANYALVLPaAYFGKATTP 123
                 36899999999***********************************************************************98888862599998776 PP

                 H.HHHHHHHHHHCHSS-EEEEE-HHHH.SHHHHHHHHHHHHT.STTEEEEEE-SS-CTHHHHHHCC..CSTTSEEEES-GGGHHHHHHTT-SEEEESCH CS
       DHDPS 114 g.lyqhfkaiieatdlpvilYnvpsrt.gadlspetvkrLae.lenivgvKeavgdleevikikke..vgkdlviysGddelllsalslGadGvisvts 207
                   ++++f +++ +  lp++lYn+p+   g+dl  + ++rLa+ +enivgvK +  ++ +++++ ++   +++++ + G+ + l   l +G  G i++ +
  KKY15916.1 124 KvIENFFLEVADKSPLPIVLYNFPGVCnGVDLDSDMITRLAKkNENIVGVKLTCASVGKITRLAASdlSKDEFSTFGGQSDFLIGGLAAGSAGCIAAFA 222
                 626889*****9999*********97538************99**************99999876432799**************************** PP

                 HCHHHHHHHHHHHHHTT-HHHHHHHHHHH..H..HHHHHCCCC.SCCHHHHHHHH.CTTSSSBB.--TTS--S-HHHHHHHH CS
       DHDPS 208 niagermrqlikalkeGdlaeaaelnekl..l..plikilfae.pnvilvktale.llGlvveatlrkPltpleeeekeele 283
                 n+ ++++  +++++++G+ +ea +l+ +      ++   ++a+ ++ + + ++ + + + +++ + r+P+ pl++ +k++++
  KKY15916.1 223 NVFPTLISRIYNLYQAGKKEEATALHLEAalAesHIKSGIAATkYATSVLSASFAgIKDAERRLQPRRPYEPLTDAAKNSIR 304
                 *******************99977665541132246666666656677777665426678888899*******999999876 PP

>> AcetylCoA_hyd_C  Acetyl-CoA hydrolase/transferase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.5e-05      0.14      40     108 ..     176     243 ..     155     258 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.5e-05
                      E-SEEETTS-EESSECTTCCTCGGTTHHHHHHHHHHSTT-EEEEE--SEETTTTEESEESS-STTSSEC CS
  AcetylCoA_hyd_C  40 salevdltGqvnseslggrvvsGvGgqldFvrgaalskggksiialpStakkgeiSrIvpslkegahvt 108
                      +++ v  + + +++ l +  +s +Ggq dF+ g  ++  +  i a+  + ++  iSrI   +++g++  
       KKY15916.1 176 TCASVGKITRLAASDLSKDEFSTFGGQSDFLIGGLAAGSAGCIAAFANVFPT-LISRIYNLYQAGKKEE 243
                      55666667778888899999***************97667667776666654.479*999999777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2096.19
//
Query:       KKY15917.1  [L=307]
Description: putative alkaline phosphatase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-33  116.2   0.0    3.9e-33  114.9   0.0    1.6  1  PhoD      PhoD-like phosphatase


Domain annotation for each model (and alignments):
>> PhoD  PhoD-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   0.0   2.2e-37   3.9e-33      29     306 ..       1     239 [.       1     255 [. 0.84

  Alignments for each domain:
  == domain 1  score: 114.9 bits;  conditional E-value: 2.2e-37
        PhoD  29 vlhlGDyiYeygpgeyaseaaelgreveppkeivtladYReryaqyktdadlqa..ahaaapfivvwDDHEvaNnswsggaenhqeetegdfekrkaaA 125
                 +l+lGD+iY +                +p ++  t ++YR++y++ ++++++++  a +++p+i+++DDHE++N+ w++g++ +             aA
  KKY15917.1   1 MLFLGDFIYVD----------------VPIRVGKTASHYRSEYRRVYASPSWSEspALKTLPWIHTLDDHEIEND-WAQGNTTD----------PFPAA 72 
                 57888888888................233566788*****************9778899***************.**965544..........4799* PP

        PhoD 126 lqAyfEw....mPireakpgeeeriyrsfeyGdladlflLDtRqyrrdqavsyegdeleaaeaevkdpartlLGeeQeqwLkaeLkasrar...Wkvla 217
                  +A+ ++    +P  +++++++++ y++f+ G+ a++f+ DtR yr +++                 p+ t++G++Q+q+L   + + + +   Wk++a
  KKY15917.1  73 SDAFWHYhvsvNPPIPKDTTPDNTTYFEFTEGP-ASFFMADTRRYRTHPEP---------------YPNATIMGQRQLQDLLLFIGRPEPEhvkWKIIA 155
                 ****999766633334446999***********.**************997...............6899****************99999999***** PP

        PhoD 218 qqvlmskvdldaelaegalpvnlDawdGypaeRerlletikeakir...nvVvLtGDvHaawandl.dykdpdgeavgvEfvtgsvssgglge 306
                  +v++++++          + + D+w G+  eRe +l+++++a+ +   ++++L+GD+H++   ++ ++ + ++++  +Ef++g++s+  l +
  KKY15917.1 156 FSVPFTQNW---------RVGTKDTWGGFLIEREIVLKAMHKAEAElgvRIIILSGDRHEFGSVRYpSVGATANASGPHEFSVGPLSQFYLPS 239
                 *********.........46789***********99999976664322389***************645555556779*********977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2118.14
//
Query:       KKY15918.1  [L=515]
Description: putative bzip transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-09   36.1   6.9    1.2e-08   34.8   6.9    1.7  1  Hap4_Hap_bind  Minimal binding motif of Hap4 for binding to H
    5.7e-05   23.1  17.3    9.2e-05   22.5  11.8    2.5  3  bZIP_1         bZIP transcription factor
     0.0065   15.4   4.2     0.0097   14.8   4.2    1.1  1  DUF812         Protein of unknown function (DUF812)
  ------ inclusion threshold ------
      0.022   15.0   1.7       0.07   13.4   1.7    1.8  1  RILP           Rab interacting lysosomal protein
      0.023   12.6   4.0      0.031   12.2   4.0    1.1  1  V_ATPase_I     V-type ATPase 116kDa subunit family
       0.14   12.5   2.0       0.27   11.6   2.0    1.4  1  Syntaxin_2     Syntaxin-like protein
        0.2   12.4   0.6        0.4   11.4   0.6    1.5  1  Plk4_PB2       Polo-like Kinase 4 Polo Box 2
       0.22   12.3   1.9       0.28   11.9   0.0    2.2  1  dsrm           Double-stranded RNA binding motif
       0.25   11.8   8.6      0.075   13.5   2.7    2.4  2  KELK           KELK-motif containing domain of MRCK Ser/Thr p
       0.48   10.6  13.6       0.76   10.0  13.6    1.3  1  Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
       0.56   10.3   9.7        1.2    9.3   9.7    1.5  1  ADIP           Afadin- and alpha -actinin-Binding
       0.56   11.4   6.4        1.5   10.0   6.4    1.7  1  SOGA           Protein SOGA
       0.73    7.3   7.4       0.99    6.8   7.4    1.0  1  DUF3584        Protein of unknown function (DUF3584)
        6.2    7.4  14.3       0.82   10.2   8.2    2.2  2  bZIP_Maf       bZIP Maf transcription factor
          9    5.7  12.9        6.8    6.1   6.3    2.0  2  Golgin_A5      Golgin subfamily A member 5


Domain annotation for each model (and alignments):
>> Hap4_Hap_bind  Minimal binding motif of Hap4 for binding to Hap2/3/5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   6.9   9.7e-12   1.2e-08       1      17 []      53      69 ..      53      69 .. 0.98

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 9.7e-12
  Hap4_Hap_bind  1 tSKnWVLPPRpKPGRKP 17
                   tSK+WV+PPRpKPGRKP
     KKY15918.1 53 TSKEWVIPPRPKPGRKP 69
                   8***************9 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5  11.8   7.7e-08   9.2e-05       7      62 ..      76     135 ..      75     137 .. 0.80
   2 !    6.1   2.0    0.0097        12      26      63 ..     113     150 ..     111     151 .. 0.93
   3 ?    2.3   0.4      0.15   1.8e+02      33      62 ..     141     170 ..     133     172 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 7.7e-08
                 XXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHH CS
      bZIP_1   7 ekrkqkNReaArrsRqRKqaeieeLerrvkaLekeNk....sLkseleelkkevekLksk 62 
                 +krk++NR a+r++R+R+ a++ eLe++ k  e e +    +L+++l+ l+ e e+ ks+
  KKY15918.1  76 TKRKAQNRAAQRAFRERRAARVGELEEQIKLVEDEHEreqnELRDQLSVLSTELEQYKSQ 135
                 69*****************************99765411114777777777777777765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0097
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  26 aeieeLerrvkaLekeNksLkseleelkkevekLkskv 63 
                  e++eL ++ ++L++e +++ks+++   + +++L++++
  KKY15918.1 113 REQNELRDQLSVLSTELEQYKSQMGAWVERCNSLEKEL 150
                 699******************************99986 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  33 rrvkaLekeNksLkseleelkkevekLksk 62 
                 +r+  Leke ++ +s+ e l+ + ++Lk+ 
  KKY15918.1 141 ERCNSLEKELTTERSTREALMQDLQTLKDR 170
                 699999***99999******9999999975 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   4.2   8.1e-06    0.0097     295     383 ..      75     166 ..      63     182 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.1e-06
      DUF812 295 ktkgsrfthaeklqftkeela...kkaeteeelkkkreeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevkl 383
                  tk++  ++a +  f + ++a   + +e+ + ++ + e+e +el++q++ l+ ++e++++++ ++ ++++ +e+el++e++++e l +++++
  KKY15918.1  75 PTKRKAQNRAAQRAFRERRAArvgELEEQIKLVEDEHEREQNELRDQLSVLSTELEQYKSQMGAWVERCNSLEKELTTERSTREALMQDLQT 166
                 455666666666667666455344444556666788999999******************************************99988765 PP

>> RILP  Rab interacting lysosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.7   5.9e-05      0.07      11      41 ..     114     145 ..     112     159 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.9e-05
        RILP  11 ERNeLKaqlfllqEELayYksee.leeernss 41 
                 E NeL  ql +l  EL++Yks+   + er++s
  KKY15918.1 114 EQNELRDQLSVLSTELEQYKSQMgAWVERCNS 145
                 99*******************85244555555 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   4.0   2.6e-05     0.031      16     117 ..      80     182 ..      76     195 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.6e-05
  V_ATPase_I  16 edvnafqrkfvk.evrrcdemerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekak 113
                 ++ +a qr+f + +  r+ e+e++++++e+e e+++++ + + +  +++ ++ ++++    e++++le+el++ +++ e+l ++l++l++ ++    + 
  KKY15918.1  80 AQNRAAQRAFRErRAARVGELEEQIKLVEDEHEREQNELRDQLSVLSTELEQYKSQMGAWVERCNSLEKELTTERSTREALMQDLQTLKDRQSATLPVP 178
                 567899****862589******************999999999999999999***********************************999887766655 PP

  V_ATPase_I 114 efle 117
                 +  +
  KKY15918.1 179 HTAS 182
                 5554 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.0   0.00023      0.27      12      82 ..      97     167 ..      93     170 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00023
  Syntaxin_2  12 vstleklvkqLgtk..kdteelreklhelieeinelikktnellkklsqldnsssdsqqklqkekLkkdfkea 82 
                 v +le+++k +++   +++ elr++l  l +e+ +  +++ + ++++++l++ +   +++ ++e L++d++++
  KKY15918.1  97 VGELEEQIKLVEDEheREQNELRDQLSVLSTELEQYKSQMGAWVERCNSLEKELT--TERSTREALMQDLQTL 167
                 778999999999996678*********************************9997..8999999999998875 PP

>> Plk4_PB2  Polo-like Kinase 4 Polo Box 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.6   0.00033       0.4      33      95 ..      95     156 ..      79     164 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00033
    Plk4_PB2  33 akvtkssgekvkiieksgksltleseeeleslsselkkllehaeeclkqclklesalssleke 95 
                 a+v + ++ ++k++e + +  + e +++l+ ls+el+++ +++    ++c +le+ l++++++
  KKY15918.1  95 ARVGELEE-QIKLVEDEHEREQNELRDQLSVLSTELEQYKSQMGAWVERCNSLEKELTTERST 156
                 45555555.9*******99999999999*****************************987754 PP

>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00024      0.28      41      65 ..      66      90 ..      46      91 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00024
                TEEEEEEEESSHHHHHHHHHHHHHH CS
        dsrm 41 gklygsGvgsnKKeAeqsAAedale 65
                g+++++ +  +K++A+++AA++a++
  KKY15918.1 66 GRKPATDTPPTKRKAQNRAAQRAFR 90
                88999999***************97 PP

>> KELK  KELK-motif containing domain of MRCK Ser/Thr protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   1.2     0.084     1e+02       3      26 ..      98     121 ..      96     129 .. 0.77
   2 ?   13.5   2.7   6.3e-05     0.075       4      58 ..     117     171 ..     115     176 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.084
        KELK   3 keLekqlrllkqEkeelqkelaea 26 
                  eLe+q++l++ E e  q+el + 
  KKY15918.1  98 GELEEQIKLVEDEHEREQNELRDQ 121
                 589********9999877777664 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 6.3e-05
        KELK   4 eLekqlrllkqEkeelqkelaeaqErlksqkkeLkdaisqrklamqefsevnekl 58 
                 eL  ql +l  E e+ + ++    Er  s +keL  + s r+  mq+++ ++++ 
  KKY15918.1 117 ELRDQLSVLSTELEQYKSQMGAWVERCNSLEKELTTERSTREALMQDLQTLKDRQ 171
                 78999*********************************************99986 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  13.6   0.00063      0.76      67     154 ..      91     171 ..      76     173 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00063
  Jnk-SapK_ap_N  67 erekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklheretellkklkelverq 154
                    er+++   + ee++ ++ed+ e+e++el+++++ l +e ++++        q+ +  e+ ++l+ke ++  ++ + l++ l+ l +rq
     KKY15918.1  91 ERRAARVGELEEQIKLVEDEHEREQNELRDQLSVLSTELEQYK-------SQMGAWVERCNSLEKELTTERSTREALMQDLQTLKDRQ 171
                    2333333334477777777777777777777777777777777.......89999999999999999999999999999999999998 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   9.7   0.00097       1.2      57     122 ..      99     168 ..      80     173 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00097
        ADIP  57 slnetirkleaeierlqsk....ierlktqleqlerelalvqakerqlekklktleqklknekeelqrlk 122
                 +l+e+i+  e e er q++     + l+t+leq+++++ ++ +++++lek+l+t+ ++   + ++lq lk
  KKY15918.1  99 ELEEQIKLVEDEHEREQNElrdqLSVLSTELEQYKSQMGAWVERCNSLEKELTTERSTREALMQDLQTLK 168
                 5666777666666666665111167799**************************************9876 PP

>> SOGA  Protein SOGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   6.4    0.0012       1.5       3      72 ..      98     165 ..      96     175 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0012
        SOGA   3 aeLrrhLqfveeEaeLlrrslseleeenkqlteeLnkyksklgeeessleeee.eassdsskeaelkeeLk 72 
                  eL +++++ve+E e   r+  el ++   l +eL++yks++g+  +  ++ e e +++ s+ ++l++ L+
  KKY15918.1  98 GELEEQIKLVEDEHE---REQNELRDQLSVLSTELEQYKSQMGAWVERCNSLEkELTTERSTREALMQDLQ 165
                 699**********98...999*********************98655544433233334444555555555 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   7.4   0.00083      0.99     665     760 ..      79     170 ..      71     182 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00083
     DUF3584 665 esekdklekaiaerkqqaeeqlqkldaqlkqleeqqkaaleelkedlseerlekkakwqevvgeldeqlaelkkaieaartqakarlkeleeaykr 760
                 ++++++ ++a  er+    +++ +l++q+k++e +++  ++el+++ls  ++e + + +  +g+  e  ++l+k++  +r+ ++a ++ l++  +r
  KKY15918.1  79 KAQNRAAQRAFRERR---AARVGELEEQIKLVEDEHEREQNELRDQLSVLSTELE-QYKSQMGAWVERCNSLEKELTTERSTREALMQDLQTLKDR 170
                 344444444444444...56899999*********************99996655.5566778888999999999999999999999988887666 PP

>> bZIP_Maf  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   8.2   0.00068      0.82      33      88 ..      77     136 ..      75     140 .. 0.84
   2 ?    0.2   0.3      0.91   1.1e+03      67      91 ..     143     167 ..     138     174 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00068
    bZIP_Maf  33 RRrlKNrgyakscrkrrlqqkeeleke....keeleeelerlqqelsrlrqekdalkrkn 88 
                  R+ +Nr +++  r+rr  +  ele++    + e e+e+++l+ +ls+l+ e++++k+++
  KKY15918.1  77 KRKAQNRAAQRAFRERRAARVGELEEQiklvEDEHEREQNELRDQLSVLSTELEQYKSQM 136
                 6999*****************999999333234667889999999***********9986 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.91
    bZIP_Maf  67 lerlqqelsrlrqekdalkrkneql 91 
                  ++l++el+  r  ++al++  + l
  KKY15918.1 143 CNSLEKELTTERSTREALMQDLQTL 167
                 4445555555555555555544433 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   6.3    0.0057       6.8     101     155 ..      82     136 ..      75     138 .. 0.88
   2 ?    2.6  10.8     0.066        79      54     123 ..     106     171 ..      99     176 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0057
   Golgin_A5 101 qleeerkakeeveaelerlkeelryleeelvrskatlqsrikdrekeieklrnql 155
                 + +++r+ +e+  a + +l+e+++ +e+e+ r++++l+ ++    +e+e+ ++q+
  KKY15918.1  82 NRAAQRAFRERRAARVGELEEQIKLVEDEHEREQNELRDQLSVLSTELEQYKSQM 136
                 456688889999999************************************9997 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.066
   Golgin_A5  54 qerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeel 123
                   +d  + e ++l+ q++ l tel++ +    +++  + e+ ++le++l++er+++e++ ++l+ lk+ +
  KKY15918.1 106 LVEDEHEREQNELRDQLSVLSTELEQYK----SQMGAWVERCNSLEKELTTERSTREALMQDLQTLKDRQ 171
                 4455666677788888888888865544....55678889999999999999999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1486  (0.0828825); expected 358.6 (0.02)
Passed bias filter:                      710  (0.0396006); expected 358.6 (0.02)
Passed Vit filter:                       142  (0.00792013); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.81u 0.35s 00:00:01.16 Elapsed: 00:00:00.51
# Mc/sec: 3017.87
//
Query:       KKY15932.1  [L=618]
Description: putative integral peroxisomal membrane [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-84  282.0   0.0    7.9e-84  281.7   0.0    1.1  1  Pex24p    Integral peroxisomal membrane peroxin
  ------ inclusion threshold ------
      0.082   11.3   6.0      0.018   13.5   2.0    1.7  2  DUF3292   Protein of unknown function (DUF3292)


Domain annotation for each model (and alignments):
>> Pex24p  Integral peroxisomal membrane peroxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.7   0.0   8.8e-88   7.9e-84       1     366 []     155     590 ..     155     590 .. 0.88

  Alignments for each domain:
  == domain 1  score: 281.7 bits;  conditional E-value: 8.8e-88
      Pex24p   1 palsspllssnppqlssrLakifplllildkvlkiltWtnpdktlsfllvytficlvpylelvvlplllllfvvmvpaylyrhplrksslikkeeskne 99 
                 pa+s+pl+++n++++++r++ +f+++   +++++++tW+ p++tlsfl vytf+cl+p l +v +pl +ll+++mvpa+l+rhp++++    +++s+ +
  KKY15932.1 155 PAFSLPLMTNNFRKFNARIGIVFVFQ---NRLIRLFTWRVPTHTLSFLAVYTFVCLNPSLLVV-VPLSVLLLFIMVPAFLARHPPPPPAA--STSSTTP 247
                 679***********************...*******************************999.*******************6666666..4566667 PP

      Pex24p 100 stsegptldea.........skeivlnLrdlqnkmedllnpidalekflkelagfkdenlstllfltllltpililllsrlipwrlillvlg.aillty 188
                  ++ gp+l++a         sk++++n+rdlqn m d+++ +d l + +++ ++f++e ls+ +++ l ++++++++ +  +pwrli lv+g +++++ 
  KKY15932.1 248 YSYYGPALAPAptikpasetSKDFFRNMRDLQNSMADFSMLHDTLVAWIAPPTNFSNEVLSSQIYFYLSIATVILFIAANTLPWRLIALVAGhCLVISG 346
                 77777777777777778********************************************************************************** PP

      Pex24p 189 Hpsvkkvllrllwrlkivrlvvkyltgkelkka.........kskekkeelikelekketa..diildespetrkpkrftveifEnqrrwllgk..... 271
                 Hp  ++ l++      +  +v+++ t  + +++              +    + l    ++   i ld+s e r     +veifE+q+r l++      
  KKY15932.1 347 HPMAQNWLQK------AQDRVITVSTTPKREANsnlfgyplpA----SL---SALPPLLQDlsAIALDSSAEMR-----EVEIFELQHRPLTPPrsdtl 427
                 *******999......556667677777777666676643321....21...22222222233999********.....**********9887677888 PP

      Pex24p 272 .gWtsslfsserydwtdetrkalkespsgvdhledvkpPedWkWdekkkWrlDlepdewvk..............eeeekk......GWvYd....... 342
                  +Wt+ l++s++yd+++++r+++++ p+g++++edv+pP++W W   kkW+lDle +ewv+                          GWv+d       
  KKY15932.1 428 eEWTHQLYTSSPYDPLSPARISGDR-PKGTRFFEDVQPPKGWVWHT-KKWELDLEAREWVTerlitgvefdvsaaG----VggeefgGWVWDlpplrke 520
                 8************************.********************.9*************999888877555543....0555589************ PP

      Pex24p 343 ...............................................dnkwkepstedslsketRRRrwiR 366
                                                                +++w+e +++ ++++e+RRRrw+R
  KKY15932.1 521 gfdddddiwlaygggtddihggggatkaqkkgkkqlemqrkareerrQKDWEE-ARYLGRTGEWRRRRWVR 590
                 ********************************************985555665.55899***********9 PP

>> DUF3292  Protein of unknown function (DUF3292)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   2.0     2e-06     0.018     108     176 ..     176     245 ..     157     253 .. 0.80
   2 ?   -1.4   0.1     0.064   5.8e+02     280     362 ..     270     354 ..     260     362 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2e-06
     DUF3292 108 llalvkhiarLrsWretrrtaafcavYfvaWl.ldllvpllvavlivLilvpeaRellFPpaplalvdsk 176
                 ++ + +++ rL +Wr +  t  f+avY++  l   llv + ++vl+ +i+vp   +   Pp p+a  +s+
  KKY15932.1 176 VFVFQNRLIRLFTWRVPTHTLSFLAVYTFVCLnPSLLVVVPLSVLLLFIMVPAFLARHPPPPPAASTSST 245
                 45677899*******************7655516788888899999999999988888788777766555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.064
     DUF3292 280 avwekmrpvmhvladvaDtwErfaNaLsPtppFpkeaprlrlaavllplllvslfvssylvvklvtflvG..fafFgdpiiqrgl 362
                   +++mr +   +ad++  ++ +   + P + F++e+   ++  +l  + ++ ++  ++l  +l+++++G  +++ g+p+ q+ l
  KKY15932.1 270 DFFRNMRDLQNSMADFSMLHDTLVAWIAPPTNFSNEVLSSQIYFYLSIATVILFIAANTLPWRLIALVAGhcLVISGHPMAQNWL 354
                 566788999999999999999999999*******************9999999999999999****9999444667888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4263.61
//
Query:       KKY15933.1  [L=790]
Description: putative dual specificity tyrosine-phosphorylation regulated kinase 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.2e-51  172.7   0.0    1.4e-50  172.1   0.0    1.3  1  Pkinase      Protein kinase domain
    2.9e-18   66.1   0.0    5.1e-18   65.3   0.0    1.3  1  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.072   13.0   2.6       0.15   12.0   0.0    2.4  3  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.1   0.0   2.4e-54   1.4e-50       1     264 []     373     669 ..     373     669 .. 0.88

  Alignments for each domain:
  == domain 1  score: 172.1 bits;  conditional E-value: 2.4e-54
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS......CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk......hpnivrlyevfeekdelylvleyveggeladllerkg 93 
                 ye++  lG+GsfG+V+++++++tg  vAvK+i+++k+ +   +++l E++il+kl+      h   v++ + f+   +l++ ++++  + l ++++++ 
  KKY15933.1 373 YEVVDILGKGSFGQVVRCIDHKTGILVAVKIIRNKKRFH---QQALVEVNILQKLRewdpenHHSCVNFDQNFYFRGHLCISTDLLGMN-LYEFIKAHD 467
                 788999***************************998887...568**********8888888***********************9976.999999555 PP

                 S..--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEET..TTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHH CS
     Pkinase  94 s..lseeeakkiakqilegleylHskgiiHrDlKpeNiLide..kgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvily 188
                    +s + +++++kq+l +l  l ++++iH+DlKpeNiL+ +  + e+K++DFG ++  +++  + +++ ++ Y++PEv+ + +y+ ++D+WslG+il+
  KKY15933.1 468 FrgFSLKLIRRFTKQMLGSLLLLQAHKVIHCDLKPENILLVHpiHSEIKVIDFGSSCFENEK--VYTYIQSRFYRSPEVILGMSYGMPIDMWSLGCILA 564
                 446*************************************9633556*********988775..69********************************* PP

                 HHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS....................................-HHHHHHHHHHT-SSGCC CS
     Pkinase 189 elltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei....................................seeakdllkkllkkdpkk 251
                 el+tg p+f+ge+++e       ql  i++i+g+ +++l e+s+                                     +e ++d+++++l++dp +
  KKY15933.1 565 ELYTGYPIFPGENEQE-------QLACIMEIFGPPEKHLIEKSTRkklffdsmgkprltvsskgrrrrpsskdlrqvlkcdDEAFLDFISRCLRWDPAR 656
                 **********777766.......444466667732222222222234468888********************************************** PP

                 STTHHHHHTSGGG CS
     Pkinase 252 Rltaeellqhpyl 264
                 R+  +e+ +h+++
  KKY15933.1 657 RMPPQEAANHEFI 669
                 **********996 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   8.5e-22   5.1e-18       4     215 ..     376     582 ..     373     599 .. 0.83

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 8.5e-22
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-......BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklk......hpnivkllgvctkeepllivteyvkgGdLlkfLrkk 95 
                   + lG+G+fG+Vv++  +    k+ + VavK+++++++ +  ++ l e++i++kl+      h+  v++    + +++l+i t+++   +L +f++++
   KKY15933.1 376 VDILGKGSFGQVVRCIDH----KTGILVAVKIIRNKKRFH--QQALVEVNILQKLRewdpenHHSCVNFDQNFYFRGHLCISTDLLGM-NLYEFIKAH 466
                  568************999....99*********7766655..6777788888887434444478888888888888889999998865.8******** PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE..TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHH CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse..nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsf 191
                  + + ++lk + +f+ q+   +  L+++k++H dl   N+Ll +  ++ +k+ DfG +    +++ y+  +    +  + +pE++  +++    D+Ws 
   KKY15933.1 467 DFRGFSLKLIRRFTKQMLGSLLLLQAHKVIHCDLKPENILLVHpiHSEIKVIDFGSSCFE-NEKVYTYIQ----SRFYRSPEVILGMSYGMPIDMWSL 559
                  *****************************************9977789*******87766.444443332....34588******************* PP

                  HHHHHHHHTTSSGTTTTSHHHHHH CS
  Pkinase_Tyr 192 GvllwEiftlgespypglkneevl 215
                  G +l E++t g   +pg +++e l
   KKY15933.1 560 GCILAELYT-GYPIFPGENEQEQL 582
                  ********9.87777777665554 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.9      0.26   1.5e+03     112     161 ..     253     300 ..     245     312 .. 0.70
   2 ?   -0.7   0.0      0.19   1.1e+03      21      84 ..     396     470 ..     380     492 .. 0.73
   3 ?   12.0   0.0   2.5e-05      0.15     154     196 ..     482     523 ..     458     526 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.26
                 TTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH-- CS
         APH 112 alpladflaqdlellrqlesatarllaselldlleeleeqvlaalaallp 161
                 ++ l++ l++ l+ + +++++   +las+ +d  e ++++ l+al+++++
  KKY15933.1 253 SSLLPRTLDSGLDRDDLVAEEEMKKLASKRKD-FEVAARE-LDALRDRAA 300
                 55566777888999999999988999999999.7777774.444444444 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.19
                 -.-EEEEEE-TT.S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTE........EEEEEE----EE-SS CS
         APH  21 g.ryvlrrnppa.raaeeirrevallrlLakagv.pvPevlagdtddeeigl........lfalieyvpgrsllr 84 
                 g  +++++++ + r ++++  ev +l+ L++ ++     ++ +d++ +++g+         + l+e++ +++++ 
  KKY15933.1 396 GiLVAVKIIRNKkRFHQQALVEVNILQKLREWDPeNHHSCVNFDQNFYFRGHlcistdllGMNLYEFIKAHDFRG 470
                 456779999999999999999*******99988875556777777777777788888888888888888888776 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 2.5e-05
                 HHHHHH--SSS-EEEE-SS-SGGGEEEC...TTEEEEE---TT- CS
         APH 154 aalaallpgelptvllHgDlhpgNllvd.pddgrvtGviDfeda 196
                 ++l  ll+  +++ ++H+Dl+p N+l+  p + ++  viDf+ +
  KKY15933.1 482 QMLGSLLL-LQAHKVIHCDLKPENILLVhPIHSEI-KVIDFGSS 523
                 34444444.7999************9988555555.59**9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (790 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 5201.32
//
Query:       KKY15934.1  [L=517]
Description: putative mitogen-activated protein kinase maf1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-61  205.9   0.0    7.9e-61  205.2   0.0    1.3  1  Maf1            Maf1 regulator
    1.1e-51  174.5   1.9    1.8e-51  173.8   1.9    1.3  1  Clat_adaptor_s  Clathrin adaptor complex small chain


Domain annotation for each model (and alignments):
>> Maf1  Maf1 regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.2   0.0   8.8e-65   7.9e-61       2     174 .]     170     370 ..     169     370 .. 0.90

  Alignments for each domain:
  == domain 1  score: 205.2 bits;  conditional E-value: 8.8e-65
        Maf1   2 egrlelYsckaagsdkklykkiekeleselessskeslsls.......aaseslssssPfgplsdkssrktlayLiatLnasfpdYDFss.lrsseFkk 92 
                 +g+++lY++kaagsdkklyk+ie+ le+++ +  + s+sls       aas +ls+ssPfgpls+ ssr+t+ayLiatLnas+pdYDFs+ lr+s+Fk+
  KKY15934.1 170 IGGCDLYTTKAAGSDKKLYKNIENGLEAQHDALLRFSNSLSppqasmaAASLNLSRSSPFGPLSEISSRRTYAYLIATLNASHPDYDFSHlLRPSDFKR 268
                 799**********************************9999******999************************************************* PP

        Maf1  93 ekslksvinnidstLss..........lveekyeelre...................klWklideeidlkdCdiYsYkpdedsdpf..keegalwsfnY 160
                 e++l+ v+n++d+tL++          +                             ++W+lid++++lk+C+iY+Y+p+e  d f  ++ega+ws+nY
  KKY15934.1 269 ESNLRAVMNSVDTTLYNlrprpsaasfA---------LpgltpasacppsahhawgpQMWRLIDSQMSLKECSIYRYAPEE--DIFegEDEGAVWSLNY 356
                 *****************55555555440.........15555555666666666666***********************7..79997777******** PP

        Maf1 161 FffnkklKrvlfls 174
                 Fffnk++Krv++l+
  KKY15934.1 357 FFFNKQRKRVCYLY 370
                 ************96 PP

>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.8   1.9     2e-55   1.8e-51       2     141 ..       3     142 ..       2     143 .. 0.98

  Alignments for each domain:
  == domain 1  score: 173.8 bits;  conditional E-value: 2e-55
                     EEEEEEE-TTS-EEEEEESSSS-CHHHHHHHHHHHHHHHTT-SSS-SEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCT CS
  Clat_adaptor_s   2 ikaililnkkgkvrlakfytavddkkkqklieevyelvsaRdsklsniveledlkviYkryasLYFvvivdeqeneliilelihlfvesLdkyfg 96 
                     i+++++l+++gkvrlak++t+++  +k+k+i++v +lv++R +k++n++e++d kv+Y+ryasL+F+ +  +++neli+le++h++ve +dky+g
      KKY15934.1   3 INYLILLSRQGKVRLAKWFTTLSPREKAKIIKDVSQLVLSRRTKMCNFLEYKDSKVVYRRYASLFFIAGCASTDNELITLEIVHRYVEQMDKYYG 97 
                     899******************************************************************************************** PP

                     S-SHHHHHHCHHHHHHHHHCCEETTEES---HHHHHHCHHHHHHH CS
  Clat_adaptor_s  97 nVceldlvfnfekvylildEivsgGeiletskkevlkrvelldkl 141
                     nVceld++fnf+k y+ildE++ +Ge++e+skk+vl+ +++ d+l
      KKY15934.1  98 NVCELDIIFNFQKAYFILDELLLAGEMQESSKKNVLRCISQQDSL 142
                     ***************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.49
# Mc/sec: 3175.92
//
Query:       KKY15935.1  [L=308]
Description: putative gamma-cysteine synthetase regulatory [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-12   45.3   0.0    9.3e-12   44.7   0.0    1.1  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   5.2e-16   9.3e-12      59     189 ..      79     231 ..      73     241 .. 0.96

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 5.2e-16
                   TTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.........................HHHHHHHHHHHHHTT CS
  Aldo_ket_red  59 kkreeviiatKvdlrdaeiksglskeniresleeslkrLgtdyvDllllHrpdpslp........................sieevldaleelvkeG 131
                   ++re++ i++K+ ++  +i++  + ++ re++   lk+L ++ +Dll +  p +s +                         +  +++++e+l++ G
    KKY15935.1  79 EPRESYDITCKL-FYLPNIPALRRCAHTREAISLVLKELAVSSIDLLIVSFPGVSFDadddgeeevssedsernevadpmeTMVTTWKTIEKLHEDG 174
                   69**********.*****************************************************************9999999************ PP

                   SEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEB CS
  Aldo_ket_red 132 kiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliay 189
                    i ++Gv++fs ++l k + + k+k+++ q++  ++  + ++ l+ ++k++g++l ++
    KKY15935.1 175 VIAQLGVAEFSSDKLAKFLPETKIKPSVDQINVKDC-CVVPKSLILYAKQEGIQLLTH 231
                   ************************************.88888899999999*999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 1971.50
//
Query:       KKY15936.1  [L=298]
Description: putative serine threonine-protein kinase bud32 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-12   46.0   0.1    1.1e-11   44.5   0.1    1.8  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    3.8e-10   40.1   0.2    1.6e-06   28.2   0.2    2.5  2  APH             Phosphotransferase enzyme family
    9.3e-10   38.3   0.0    1.2e-09   38.0   0.0    1.1  1  Pkinase         Protein kinase domain
    4.3e-05   22.9   0.0    6.1e-05   22.4   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
  ------ inclusion threshold ------
      0.049   13.2   0.0       0.14   11.8   0.0    1.9  1  RIO1            RIO1 family
      0.058   12.2   0.0       0.09   11.5   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.1   3.8e-15   1.1e-11      51     202 ..      79     258 ..      69     266 .. 0.84

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 3.8e-15
         Kdo  51 fklgrtravrEfrllkrLeeagvavpkpvaagavkvgle.yrAlllterlegaqdLedllakwae............laeelkrallkavgrliaklhr 136
                  +l + r+ +E r+l +L+++g +    v+a    ++++   A ll+e +eg+  L++ + +w++            +ae++ ra l++vg +iaklh+
  KKY15936.1  79 QRLTKQRILAEARVLLKLKREGYKNVPGVYALDWTSDGArGAAWLLMEWIEGVT-LKEGMLRWERackeqnlpagdaMAEQKARAALRRVGVAIAKLHA 176
                 348999*****************988888888888888857889********97.555555576556667888888889999***************** PP

         Kdo 137 agvnHadlyaknillqqee.................eeeaeiwliDldkarlrlradrwrekdLarLkrsflkielteadwea 202
                  gv H+dl   ni+++ +                  e + e++liD+  a++ + ++ +r  dL  L++ f + + ++ d+ +
  KKY15936.1 177 SGVIHGDLTSSNIMMKPRTitsqqtngdhsdvapgiELDGEVILIDFGLAQQTV-QEEDRAVDLYVLEKAFGSTHPKQEDMFD 258
                 ***************99888888899999888888777889*******999888.999***********99988887777655 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.2   5.4e-10   1.6e-06      29     107 ..      78     176 ..      38     178 .. 0.79
   2 !   14.6   0.0   8.1e-06     0.024     138     182 ..     149     193 ..     135     250 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 5.4e-10
                 -TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTB.S-EEETTEEEEEEE----EE-SS..................HHHHHHHHHHHHHHHHHHCCHHC CS
         APH  29 pparaaeeirrevallrlLakagv.pvPevlagd.tddeeigllfalieyvpgrsllr..................klsaaqlpellealgeflaalhq 107
                   + ++++i +e+++l  L + g   vP v+a+d t+d+ +g  ++l+e+++g +l +                  ++ ++ ++++l+++g ++a+lh+
  KKY15936.1  78 DQRLTKQRILAEARVLLKLKREGYkNVPGVYALDwTSDGARGAAWLLMEWIEGVTLKEgmlrwerackeqnlpagdAMAEQKARAALRRVGVAIAKLHA 176
                 2235678999************99**********************************99999999999999999988889999999999999999997 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 8.1e-06
                 GCCTCC.HHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC. CS
         APH 138 aselld.lleeleeqvlaalaallpgelptvllHgDlhpgNllvdp 182
                  ++ +    +++++ +l+++    ++  + +++HgDl + N++++p
  KKY15936.1 149 LPAGDAmAEQKARA-ALRRVGVAIAKLHASGVIHGDLTSSNIMMKP 193
                 33333334445555.6666666666699***************993 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   3.9e-13   1.2e-09      41     153 ..      82     234 ..      40     250 .. 0.78

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 3.9e-13
                 HHHHHHHHHHHHHHHS...CTTB--EE..EEEEE..SSEEEEEEE--TTEBHHHHHH............HHSS--HHHHHHHHHHHHHHHHHHHHTTEE CS
     Pkinase  41 kekkvlrEikilkklk...hpnivrly..evfee..kdelylvleyveggeladlle............rkgslseeeakkiakqilegleylHskgii 120
                 +++++l+E ++l klk    +n+  +y  ++ ++      +l++e++eg +l++ +             +  +++e++a+  ++++  +++ lH+ g+i
  KKY15936.1  82 TKQRILAEARVLLKLKregYKNVPGVYalDWTSDgaRGAAWLLMEWIEGVTLKEGMLrwerackeqnlpAGDAMAEQKARAALRRVGVAIAKLHASGVI 180
                 33889999999999997666777444411444447777899********9977644446667777777666678899********************** PP

                 -SS-SGGGEEEET.....................TTEEEE-SGTTSEESSSSCS CS
     Pkinase 121 HrDlKpeNiLide.....................kgelKitDFGlakelesssk 153
                 H Dl ++Ni+++                      +ge+ ++DFGla++  ++++
  KKY15936.1 181 HGDLTSSNIMMKPrtitsqqtngdhsdvapgielDGEVILIDFGLAQQTVQEED 234
                 ************559******9999999999999999***********999876 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0     2e-08   6.1e-05      44     158 ..      82     234 ..      41     242 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2e-08
                  HHHHHHHHHHHHHTS-BTTB--EEEEEE.......SSSSEEEEEE--TTEBHHHHHHHT..........CTTTSBHHHHHHHHHHHHHHHHHHHHTTE CS
  Pkinase_Tyr  44 ekeelleeakimkklkhpnivkllgvct.......keepllivteyvkgGdLlkfLrkk..........ekekltlkdllsfalqvAkGmeyLeskkl 124
                  +k+++l ea+++ klk +   ++ gv+         ++  ++++e+++g +L++ + +           + +++  ++       v  +++ L++  +
   KKY15936.1  82 TKQRILAEARVLLKLKREGYKNVPGVYAldwtsdgARGAAWLLMEWIEGVTLKEGMLRWerackeqnlpAGDAMAEQKARAALRRVGVAIAKLHASGV 179
                  4789999*****9998776666666666555655555669*************97766669999999988888888888999999************* PP

                  EEST-SGGGEEEEE.....................TTEEEE-STTTHEETTTSSE CS
  Pkinase_Tyr 125 vHrdlaarNvLlse.....................nkvvkisDfGLardiekdde 158
                  +H dl++ N++++                      +  v + DfGLa+++ ++++
   KKY15936.1 180 IHGDLTSSNIMMKPrtitsqqtngdhsdvapgielDGEVILIDFGLAQQTVQEED 234
                  *************999999***************99999999*****99965554 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.6e-05      0.14     104     167 ..     157     215 ..      65     236 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.6e-05
                 HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETTEEEE--GTTEEETTSTTHHHHHHHH CS
        RIO1 104 eeeaeelyeevleemrklykeaglvHaDLSeyNvlvdedkvviIDvsQaveldhpnalefLerD 167
                 e++a+ +++ v    ++ ++  g++H+DL   N++++   ++    sQ ++ dh + +  +e D
  KKY15936.1 157 EQKARAALRRVGV-AIAKLHASGVIHGDLTSSNIMMKPRTIT----SQQTNGDHSDVAPGIELD 215
                 3344444444433.44556699**************988664....666666666655555555 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     3e-05      0.09     317     369 ..     169     236 ..     150     252 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3e-05
  Pkinase_fungal 317 kghrsLflkagiLHrDiSenNilit...........dskke........gerkglLiDLDlakelsddsses 369
                      +  +L+   g++H D    Ni++            d   +         + + +LiD+ la ++ +++ ++
      KKY15936.1 169 VAIAKLH-ASGVIHGDLTSSNIMMKprtitsqqtngD---HsdvapgieLDGEVILIDFGLAQQTVQEEDRA 236
                     5667899.99***************888876665552...044566776888999****9999988665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2048.71
//
Query:       KKY15937.1  [L=403]
Description: putative zip zinc transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-56  192.5   4.6    7.4e-45  153.6   0.5    2.0  2  Zip       ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.6   0.5   4.1e-49   7.4e-45       7     275 ..      69     325 ..      67     333 .. 0.83
   2 !   40.8   0.3   8.7e-15   1.6e-10     280     332 ..     347     400 ..     335     401 .. 0.91

  Alignments for each domain:
  == domain 1  score: 153.6 bits;  conditional E-value: 4.1e-49
         Zip   7 aiiaililsllgllgpllvpkiskllsklllslllafavGvllgtaflhLlPealealeesqleeehth........plagllvllGflllllvekllt 97 
                 ai a+l++ ++++ + +l+ ++  + + + l++++afavG llg+ ++hLlPe +     + +     +        +l g+ +++Gfl++  ++k l+
  KKY15937.1  69 AINAFLATLYISGPPNFLLALCPPNIDPSSLTIMVAFAVGGLLGDTLFHLLPEIFLDEVAEGEVR---FvmiepnrnLLLGVGIMVGFLTFVAMDKGLR 164
                 78999*************************************************98666655444...334699999********************** PP

         Zip  98 mivekksshkektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseeedkeklaslkvraiilllglilH 196
                 ++ ++         + +++++ +s+++++ s   +++s+ +  ++  ++ +a +++ ++   ++++  ++++          +s+k+ +++++++++ H
  KKY15937.1 165 IATGG---------EGHTHEHGHSHSHEEDSTAVSTGSSAGSPNGDLKRRKAAEPALDKPLPTPPTNTSETS----------TSIKLSSYLNIIADFTH 244
                 99888.........4445555555555555555555555555555666666665555555555555444444..........469************** PP

         Zip 197 sfidGLAlG..vssssstgislfiAvllHelpeelglgaiLlkaglsrkkavllnllfaltaplGiliGilvrsisessga 275
                 +++dGLAl+  + ss + g ++++Av++He+p+e+g++a L++ gl++k+a+ +++++al+a+lG+ iG++v+++++ss  
  KKY15937.1 245 NITDGLALSssFYSSPTLGATTTMAVFFHEIPHEVGDFALLIQGGLPKKWAMGMQFVTALGAVLGTCIGVAVQEMGGSSNT 325
                 ***********************************************************************9995555443 PP

  == domain 2  score: 40.8 bits;  conditional E-value: 8.7e-15
         Zip 280 gillalsaGtflYvalvellphEllnek..gssslkqsllqllglllGfalmlll 332
                  +ll+++aGtflYv++v ++p Ell+    + ++lk++ lq+l++ +G+a+ml++
  KKY15937.1 347 DMLLPFTAGTFLYVGTVAVIP-ELLETGpnKGKELKKTGLQFLAMGVGAAIMLAI 400
                 589******************.*9998888779********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.52
# Mc/sec: 2351.96
//
Query:       KKY15938.1  [L=233]
Description: putative 66s preribosome component nop16 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-69  233.1   9.9    3.7e-69  233.0   9.9    1.0  1  Nop16           Ribosome biogenesis protein Nop16


Domain annotation for each model (and alignments):
>> Nop16  Ribosome biogenesis protein Nop16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.0   9.9   2.1e-73   3.7e-69       1     209 [.       5     226 ..       5     227 .. 0.93

  Alignments for each domain:
  == domain 1  score: 233.0 bits;  conditional E-value: 2.1e-73
       Nop16   1 rqrrkarssvkkakkrkksk...lkkkvnilgnpiiaenWdkkkTlkqNYkrLGLvaklnapaGgvekklskanekeekekkklee.....eesdekkl 91 
                 rq++k+rssv+k+k++ + +    +kk++ +gn+iia+nWd+++Tl+qNYkrLGL ++lnap+Ggvekk +k+ ++e++    +         + +k l
  KKY15938.1   5 RQKKKNRSSVSKVKATPRGRtktGRKKIDFMGNEIIAQNWDRSLTLQQNYKRLGLSSSLNAPTGGVEKKAAKSATAEDTGAYID-PlsinpGGKVKKLL 102
                 9*************5544445579**********************************************99887776654333.147799999999** PP

       Nop16  92 skgearieRD.eeGkivkviegkkkkeneledpleeleedeekeeeeekkkktevvkeLekeaare.....kakkerhlsereeewlerLvekhGdDye 184
                 +++ear+eRD e+Gki++vi+++++k n+l+dpl++l++ e ++  +++ +++ v++eLe++a+ e     k+k++r++s+reeewlerLve hGd+y+
  KKY15938.1 103 KPTEARVERDpETGKILRVISSNNEKPNPLNDPLNDLSSPEPEDVVSKSATSKGVIQELEAQARAEeaqllKEKRPRQQSKREEEWLERLVEAHGDNYK 201
                 *********************9999**********************99**************999999****************************** PP

       Nop16 185 aMarDrkLNpmqqtegdlkrrikkw 209
                 aM+rDrkLNpmqq+egd+krr++kw
  KKY15938.1 202 AMFRDRKLNPMQQSEGDIKRRVEKW 226
                 ************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1039  (0.0579508); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1598.04
//
Query:       KKY15939.1  [L=697]
Description: putative gpi inositol-deacylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-90  301.4   0.0    6.4e-90  300.9   0.0    1.2  1  PGAP1          PGAP1-like protein
    3.1e-06   28.0   0.1      7e-06   26.8   0.1    1.7  1  Abhydrolase_6  Alpha/beta hydrolase family
    3.6e-05   23.7   0.0    7.8e-05   22.6   0.0    1.6  1  Palm_thioest   Palmitoyl protein thioesterase
    0.00013   21.7   0.0    0.00042   20.0   0.0    1.8  2  Abhydrolase_1  alpha/beta hydrolase fold
    0.00079   18.8   0.0     0.0016   17.8   0.0    1.4  1  Hydrolase_4    Serine aminopeptidase, S33
     0.0032   17.1   0.0     0.0058   16.3   0.0    1.3  1  Esterase       Putative esterase
     0.0049   16.1   0.0     0.0085   15.3   0.0    1.3  1  LCAT           Lecithin:cholesterol acyltransferase
  ------ inclusion threshold ------
      0.019   14.5   0.0      0.036   13.6   0.0    1.4  1  DUF676         Putative serine esterase (DUF676)
      0.066   13.2   0.0       0.16   12.0   0.0    1.6  1  RHH_3          Ribbon-helix-helix domain
       0.18   10.6   0.0       0.26   10.1   0.0    1.1  1  COesterase     Carboxylesterase family


Domain annotation for each model (and alignments):
>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.9   0.0   3.6e-93   6.4e-90       2     230 ..      45     288 ..      44     289 .. 0.95

  Alignments for each domain:
  == domain 1  score: 300.9 bits;  conditional E-value: 3.6e-93
       PGAP1   2 lsGipVlFvpGnagsykqvrslAseaaeayqe...lrkllknqnkkeldfftvdfneelsaldGrtlldqaeylndaIkyIlsly........ssseke 89 
                 l G+pVlF+pGnagsykqvrsl+sea++ + +   +++++ +   ++ldfft dfne+l a++G+t++dqa+y+n+aI+yIlsly        +s+ ++
  KKY15939.1  45 LRGAPVLFIPGNAGSYKQVRSLSSEASRYFVStlrHDETAFKAGLRSLDFFTLDFNEDLAAFHGQTMIDQADYVNEAIAYILSLYhdpakssrDSNLPD 143
                 679***********************776666876666666777788*******************************************99999999* PP

       PGAP1  90 ptsviliGHSmGGivaraaltlknyikqsvntiltlasPhalpplsfdkdilklyervnefwkkeleekek....lenvllvsitggirdsmvpaeyss 184
                 p+sviliGHSmGGivar++lt  ny+++svnti+t+++Ph+ pp++fd di++ly+++n+fw+ ++++k +    l +v+lvsi+gg  d++vp++y+s
  KKY15939.1 144 PQSVILIGHSMGGIVARTVLTTTNYQPNSVNTIITMSAPHTRPPVTFDSDIVHLYSQINTFWRDAYSQKWAnnnpLWHVTLVSIAGGGLDTVVPSDYAS 242
                 *****************************************************************9998778899************************ PP

       PGAP1 185 leelvpstnglsvattsipkvwlsidhlaivwckqlrrvvaralle 230
                 + +l+p+t+g++v+t++ip+vw+++dhl+i+wc+qlr v+ +a+++
  KKY15939.1 243 VTSLIPETHGFTVFTSGIPDVWTGMDHLSITWCDQLRKVIVKAIFD 288
                 ******************************************9987 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1   3.9e-09     7e-06       1     125 [.      50     221 ..      50     311 .. 0.57

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.9e-09
                    EEEE--GC...............GCHHHH........HHHHCCTCEEEEE--TTSTS-GGCS--HHH..C.......HHHHHHHCCTT........ CS
  Abhydrolase_6   1 vlllHGagss..........assWlvapL........aallaagvhvlapDlpGhGrsdpppldled..l.......adlaalldelaa....... 62 
                    vl+++G  +s          as ++v+ L        a l++ ++  +++D+             ++  +        d+a++++e +a       
     KKY15939.1  50 VLFIPGNAGSykqvrslsseASRYFVSTLrhdetafkAGLRSLDF--FTLDF-------------NEdlAafhgqtmIDQADYVNEAIAyilslyh 130
                    688888443212222222223333333333332222222222223..33333.............2222012222224445555555555555666 PP

                    .............TTSEEEEEETCHHHHHHHHHHCC...........EEEEES-..----TTTS----TTHHHHHHTT-C..........CCCH CS
  Abhydrolase_6  63 ............gggpvvlvGHSlGGalalaaapla.........lvvgvlldppptalpagllaaalelllallallrl..........lawl 125
                                ++  v+l+GHS+GG++a     ++         ++  + +++p t +p ++ ++++ l+ + ++  r+          + w+
     KKY15939.1 131 dpakssrdsnlpDPQSVILIGHSMGGIVART---VLtttnyqpnsVNTIITMSAPHTRPPVTFDSDIVHLYSQINTFWRDaysqkwannnPLWH 221
                    67779999*99999999**************...555558987755444999998888888887777777776666444433323333334444 PP

>> Palm_thioest  Palmitoyl protein thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   4.3e-08   7.8e-05      49     104 ..     109     184 ..      49     229 .. 0.68

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 4.3e-08
  Palm_thioest  49 gnlndqveavckk...................lelangfhaiGfSQGglflRaliercddkkn.vrnlislggpqa 104
                   +++ dq++ v ++                   l  ++ +++iG+S Gg+++R ++ +++ + n v+++i++++p+ 
    KKY15939.1 109 QTMIDQADYVNEAiayilslyhdpakssrdsnLPDPQSVILIGHSMGGIVARTVLTTTNYQPNsVNTIITMSAPHT 184
                   44555555533334445555555666667777446799*******************9877779**********96 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.8   3.3e+03       2      17 ..      49      64 ..      48      94 .. 0.68
   2 !   20.0   0.0   2.3e-07   0.00042      73     145 ..     145     221 ..     140     229 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.8
                   EEEEE-STTTCGGGGT CS
  Abhydrolase_1  2 vlvilhGlpgssdvwa 17
                   ++++++G +gs    +
     KKY15939.1 49 PVLFIPGNAGSYKQVR 64
                   899******9654422 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 2.3e-07
                    SSEEEEEETHHHHHHHHHHHHH...GGGEEEEEEESE.CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHH CS
  Abhydrolase_1  73 dkltlvGhSmGGmialayaaey...perVkalvllga.idpaaslieaqrqqaksfpdffdgyaadcarnpagplla 145
                    ++++l+GhSmGG +a++++      p++V+ +++++a ++ ++ + + +   ++s  ++f ++a+  +  + +pl+ 
     KKY15939.1 145 QSVILIGHSMGGIVARTVLTTTnyqPNSVNTIITMSApHTRPPVTFDSDIVHLYSQINTFWRDAYSQKWANNNPLWH 221
                    6778****************9999*************8777777777777777777777777777776666666665 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   8.8e-07    0.0016      77     116 ..     146     189 ..     122     225 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 8.8e-07
  Hydrolase_4  77 plfllGhSmGGliallyl...lrypdkvagli.lsaPalkikak 116
                   ++l+GhSmGG++a ++l     +p++v+ +i +saP  +++  
   KKY15939.1 146 SVILIGHSMGGIVARTVLtttNYQPNSVNTIItMSAPHTRPPVT 189
                  699**************987444455888655256666665544 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.2e-06    0.0058     115     175 ..     145     223 ..     135     237 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.2e-06
                 CCEEEEEETHHHHHH...HHHHHCSTTTCCEEEEES--S-CC................HCHHHCTTCCHHHCC-CCCCHC CS
    Esterase 115 dgravaGqSmGGlgA...LilalkhpdrFgsvssfSpivnps................namWgqeekeawqendpvllak 175
                 ++  ++G+SmGG +A   L++  + p++   ++ +S++  ++                n +W  + +++w+ n p+ ++ 
  KKY15939.1 145 QSVILIGHSMGGIVArtvLTTTNYQPNSVNTIITMSAP-HTRppvtfdsdivhlysqiNTFWRDAYSQKWANNNPLWHVT 223
                 33789********996657777779**********955.333789****************************9998875 PP

>> LCAT  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.7e-06    0.0085     121     162 ..     145     183 ..     137     190 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.7e-06
        LCAT 121 kkvvliaHSmGnllvlyflkwveaeaWvdqhikafislgapl 162
                 + v+li+HSmG+ + +  l   + +    + ++ +i ++ap 
  KKY15939.1 145 QSVILIGHSMGGIVARTVLTTTNYQP---NSVNTIITMSAPH 183
                 78*****************9966655...99*********96 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     2e-05     0.036      80     126 ..     146     183 ..     119     191 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2e-05
      DUF676  80 kiSfvghSlGgliaraaiaklkekemtlkeaikglepvtfitlasPh 126
                  + ++ghS+Gg++ar +++  + +++          + t it++ Ph
  KKY15939.1 146 SVILIGHSMGGIVARTVLTTTNYQPN---------SVNTIITMSAPH 183
                 45589**************7775543.........467999999999 PP

>> RHH_3  Ribbon-helix-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.8e-05      0.16      12      37 ..      98     123 ..      95     129 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.8e-05
       RHH_3  12 elaekLkaLSekTrIprSklldeAie 37 
                 + +e L a + +T+I +++++ eAi 
  KKY15939.1  98 DFNEDLAAFHGQTMIDQADYVNEAIA 123
                 567889999***************97 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00014      0.26     183     225 ..     143     186 ..     142     204 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00014
                 EEEEEEEEEETHHHHHHHHHHHS.GGGTTSBSEEEEES--TTST CS
  COesterase 183 dpervtlfGesAGaasvslllls.plsrglfkraIlqSGsalsp 225
                 dp++v l+G+s G+ ++   l++ ++  + ++  I++S+  + p
  KKY15939.1 143 DPQSVILIGHSMGGIVARTVLTTtNYQPNSVNTIITMSAPHTRP 186
                 9****************87766637888**********987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (697 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 4236.60
//
Query:       KKY15940.1  [L=270]
Description: putative class ii aldolase adducin domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-28   99.9   0.1    2.1e-28   99.5   0.1    1.1  1  Aldolase_II  Class II Aldolase and Adducin N-terminal domain


Domain annotation for each model (and alignments):
>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   0.1   1.2e-32   2.1e-28       2     185 ..      12     213 ..      11     214 .. 0.81

  Alignments for each domain:
  == domain 1  score: 99.5 bits;  conditional E-value: 1.2e-32
                  HHHHHHHHHHHTTSSCTTBCEEEEEET..STTEEEEEBTSS-GGGHT.GGGEEEEETTSCEEEECECSSSTB-..TTHHHHHHHHHH-TT-SEEEEE- CS
  Aldolase_II   2 elaeasrllarrglvegtgGniSvrvp..eedsflitpsgvdfeelt.aedlvvvdldsgevvegkekggkps..setplHlaiykarpdaravvHtH 94 
                  +l++as++l+++g+++++ G+iSvr p  e  + + +p +++++ +t +ed+v++++ ++e++  + ++  p   +e+ +H+ iy++ + ++ vvH+H
   KKY15940.1  12 KLITASHILHHHGVCDAY-GHISVRNPyrESADTFFMPQNLPPALVTsEEDIVEYNVSDAEPL--NRDA--PKgyIERNIHAGIYRQYSGVQSVVHAH 104
                  799***************.******9898888999************88********889999..3344..5555*********************** PP

                  -HHHHHHHTCCSTSCHCCSSHHHHC.HSS.....SEEEE.....ES-SSTTCHHH.....HHHHHHHHHH..........S-SEEEETTTEEEEEESS CS
  Aldolase_II  95 spaavalsalagkeglppltqeaaklllg.....devpv.....ipyaapgteel.....gealaealke..........dakavllrnHGlltvGet 167
                  ++ +va++ ++ + +l+p+ ++a+  l+      d   v       ++      +     g+a +  + +          d ++vl+r+HG++ ++++
   KKY15940.1 105 AESVVAFT-IFPEGTLQPVYHMAGF-LGTktptfDIASVyseadQQDML-----IrtpplGDAFSCFFSAppsskknpkpDYSVVLMRGHGFTIAAAS 195
                  ********.5667778886666665.43345454333333333333333.....25555588888777745888888888888*************** PP

                  HHHHHHHHHHHHHHHHHH CS
  Aldolase_II 168 leeAvalaetleeaaeiq 185
                  +e+Av +a  +   aeiq
   KKY15940.1 196 IEHAVVQANFTKANAEIQ 213
                  ***************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.49
# Mc/sec: 1646.49
//
Query:       KKY15941.1  [L=389]
Description: putative extracellular aldonolactonase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-67  227.6   0.1      4e-67  226.9   0.1    1.2  1  Lactonase  Lactonase, 7-bladed beta-propeller


Domain annotation for each model (and alignments):
>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.9   0.1   2.3e-71     4e-67       2     327 ..      23     362 ..      15     368 .. 0.89

  Alignments for each domain:
  == domain 1  score: 226.9 bits;  conditional E-value: 2.3e-71
                 EEEEEGGSSS.TEEEEEEE..ETTTS-EEEEEE.EEESS---SEEE-TTSSEEEEEET.S...TTTEEEEEEEETTTTEEEEEEEEE.SSS-EEEEEE- CS
   Lactonase   2 lyvGtytkgeskgiytlkl..dtetgkltplel.vaelenPsyLalspdgktlYavnetg...eeggvsafaidkdsgeltllnkvssegaspchlsvd 94 
                 l+v+ y     +++++l+l  + +t+kl+ ++   +++  Ps+L+l+++g+ l+++ne+    + g++s+f+++++     ++ ++ss+++  ++ ++ 
  KKY15941.1  23 LFVANYA----NSVTQLSLtrSGSTAKLETTGVtRDCGITPSWLELDKAGDNLFCINEAYtleDAGSLSSFSLNST---PPVIRRNSSSDVGGVYSTIY 114
                 5566666....5777777744677888888888677**********************999*9***********87...46677777777777777775 PP

                 TTSSEEEEEETTTTEEEEEEB.TTSEBESECE.EEE.....SSTTT-SSTTEEEEEE-TTSSEEEEEETTTTEEEEEEE.-TTS-EEEEEEEE-STT-- CS
   Lactonase  95 edgkllavAnYsggsvsvfpldadgslkeasq.vlkhegsgpnperqesphaHsvvldpdgkfllvpDLGtDrvrvykldkatgkltepasvklppgsG 192
                   +  +a A+Y+g++vsvf+ ++ +sl e ++  ++ + +gpnp+rqe+ph+H++  dp+g++l++pDLG+D +r+y +  ++ +lte + +++  gsG
  KKY15941.1 115 APN-RIALAHYTGSAVSVFDTSNVSSLVEIQSfHYTLSNPGPNPSRQEAPHPHQILQDPTGQYLVAPDLGADLLRIYSVGWDD-RLTELEPFQAISGSG 211
                 555.59******************9999997645555566***************************************7777.7************** PP

                 EEEEEE-T..TSSEEEEEETTTTEEEEE..EEE-TTTEEEEEEEEESS-T...SS-S---EEEEEE-TTSSEEEEEETS..........STEEEEEEE- CS
   Lactonase 193 PRHlaFhp..dgkiaYvvnELsstvsvf..sydeatgaleelqtvstlpe...gftgknsaaeIrlspdgkflyvSnRg..........adsiavfavd 274
                 PRH+aF +   +++ Y+++ELs++++ +   y+++t ++ ++   st +    + +g+  +aeI  sp+ k+l +S R           +d+++++++d
  KKY15941.1 212 PRHGAFLKthGKTYYYLLGELSNSLTGYevLYENNTLTFAQIYSKSTFSTsygDGSGSIFPAEIY-SPEPKHLTISLRNdsrstfedqpSDTLITYKID 309
                 ******9955599***************8889999999999988777777554678889*****6.88******************************* PP

                 TTT--EEEEEEEE-SSS.--EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE CS
   Lactonase 275 eadgtltlveevstegkfPRdfaldpsgklllvanqksdnvtvferdaetGkL 327
                 +++g+ +l ++ +++g +PR f+++ +g+l++v  q s+++t+ferd++tG +
  KKY15941.1 310 PKTGNPSLLDTSPAGGSYPRAFSVNANGTLVAVTTQYSGRLTIFERDPTTGLI 362
                 ***************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.35s 00:00:00.93 Elapsed: 00:00:00.52
# Mc/sec: 2232.50
//
Query:       KKY15942.1  [L=260]
Description: putative 2-deoxy-d-gluconate 3-dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-54  184.4   0.0    2.6e-54  184.3   0.0    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    2.2e-52  177.4   0.2    2.7e-52  177.1   0.2    1.1  1  adh_short        short chain dehydrogenase
    1.5e-12   47.8   0.1    2.1e-12   47.3   0.1    1.3  1  KR               KR domain
    1.8e-05   24.4   0.1    7.7e-05   22.3   0.0    2.0  3  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.015   14.7   0.1      0.026   13.9   0.1    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.026   13.9   0.0       0.06   12.7   0.0    1.6  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
      0.032   13.5   0.3       0.11   11.8   0.0    2.0  2  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas
      0.037   14.0   0.1      0.085   12.8   0.1    1.6  2  ADH_zinc_N       Zinc-binding dehydrogenase
      0.042   13.3   0.1      0.072   12.5   0.1    1.3  1  PALP             Pyridoxal-phosphate dependent enzyme
      0.055   13.1   0.0       0.77    9.4   0.0    2.3  3  Glyco_transf_5   Starch synthase catalytic domain
      0.076   12.1   0.0        0.1   11.7   0.0    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.087   12.4   0.3       0.14   11.6   0.3    1.5  1  NmrA             NmrA-like family
       0.11   12.1   0.0       0.17   11.5   0.0    1.3  1  ApbA             Ketopantoate reductase PanE/ApbA
       0.12   12.4   0.0        4.7    7.2   0.0    2.7  2  Glyco_transf_4   Glycosyltransferase Family 4
       0.13   11.4   0.0        0.2   10.7   0.0    1.3  1  RmlD_sub_bind    RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.3   0.0   2.2e-57   2.6e-54       1     233 [.      19     257 ..      19     258 .. 0.94

  Alignments for each domain:
  == domain 1  score: 184.3 bits;  conditional E-value: 2.2e-57
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Ga +gIG+ +A alae+Ga+++l++++e++k++ e++a+ lg++v  + +   d ++ve +v ++v++  ++Dilvn+agi ++   p ++++ e++
    KKY15942.1  19 GATRGIGQSMAVALAEAGADIILVQRDEKNKQTYEKIAS-LGRRVtiYTAELGDSKAVEGIVPNLVKQGHSMDILVNCAGIQRR--HPSEKFPMEDW 112
                   999***************************999999998.6666445*************************************..*********** PP

                   HHHHHHHTHHHHHHHHHHHH.HCTSC.....CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHH CS
  adh_short_C2  96 draldvnlyslfllakaalp.lmkeg.....gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfd 186
                   +++++vnl  +f l++ +   l+++      g+i+n+ s+ + ++     ay+a+K+++ ++t+++ +e+ +kgiRvNa++pg+i T++++++  ++
    KKY15942.1 113 NEVIQVNLSTVFTLCRDFGAhLLTKPdsrdrGAIINIGSLLSFQGGITVPAYAASKGGVAQMTKTFSNEWSSKGIRVNAIAPGYIGTDMNEALIANE 209
                   ******************9975444357889***************************************************************9** PP

                   HHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGT.T--SEEEEESTTG CS
  adh_short_C2 187 elleelearaplgrlgtpeevaeaalfLasdeas.yitGqtlvvDgGl 233
                   +  +++ +r+p gr+g+p++    +++Las +as y+tG+++ vDgG+
    KKY15942.1 210 ARARQILERIPSGRWGSPDDFKGPIIWLASGKASgYVTGEIVTVDGGW 257
                   ******************************765538***********7 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.1   0.2   2.2e-55   2.7e-52       1     192 [.      13     207 ..      13     210 .. 0.97

  Alignments for each domain:
  == domain 1  score: 177.1 bits;  conditional E-value: 2.2e-55
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 k++l+tGa++GIG+ +a +la++Ga++++v+r e k +++++++ ++g++++++++ + d+++ve +v + vk+  ++d+Lvn+AGi++++p +++  e
  KKY15942.1  13 KTALITGATRGIGQSMAVALAEAGADIILVQRDE-KNKQTYEKIASLGRRVTIYTAELGDSKAVEGIVPNLVKQGHSMDILVNCAGIQRRHPSEKFPME 110
                 79*****************************995.567************************************************************* PP

                 HHHHHHHHHTHHHHHHHHHHHHHHH....HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCT CS
   adh_short 100 ewervievNltgvflltravlpaml....kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelre 192
                 +w++vi+vNl  vf l+r +  ++l    ++ +G+I+n++S  ++++ + v+aY+AsK++va++t+++++e++++girvna+aPG++ Tdm+++l +
  KKY15942.1 111 DWNEVIQVNLSTVFTLCRDFGAHLLtkpdSRDRGAIINIGSLLSFQGGITVPAYAASKGGVAQMTKTFSNEWSSKGIRVNAIAPGYIGTDMNEALIA 207
                 ***********************9999999**************************************************************98766 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.1   1.8e-15   2.1e-12       2     120 ..      14     127 ..      13     199 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 1.8e-15
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 t litG++ g+G+++a  lae ga  ++l+ R+    e++k++ +++++lg +v+++ a++ d++ave ++ ++ ++++++   +++Ag+ r ++ e+ 
  KKY15942.1  14 TALITGATRGIGQSMAVALAEAGA-DIILVQRD----EKNKQTYEKIASLGRRVTIYTAELGDSKAVEGIVPNLVKQGHSMDILVNCAGIQRRHPSEKF 107
                 579********************8.58899999....566678999***************************************************** PP

                 -HHHHHHHHTTTTHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLh 120
                  +ed+++v++  ++ +  L 
  KKY15942.1 108 PMEDWNEVIQVNLSTVFTLC 127
                 *********99888777764 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   6.5e-08   7.7e-05       1      96 [.      15     120 ..      15     136 .. 0.74
   2 ?   -1.6   0.0       1.2   1.5e+03     224     241 .]     133     150 ..     128     150 .. 0.90
   3 ?   -1.6   0.0       1.2   1.5e+03     141     165 ..     163     187 ..     159     220 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 6.5e-08
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.....EEEE--TT-HHHHHHHH....HHH.T-SEEEE--S---HHHHHHSHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.....elveldltdrsalerlf....kee.qpdavihlAavggvaassedpadfie 89 
                 +l+tGat  iG+ ++ al+e+g ++i ++r++++++t ++        ++++++l d++a+e ++    k+   +d+ +++A+++  + s + p + ++
  KKY15942.1  15 ALITGATRGIGQSMAVALAEAGADIILVQRDEKNKQTYEKIASlgrrvTIYTAELGDSKAVEGIVpnlvKQGhSMDILVNCAGIQRRHPSEKFPMEDWN 113
                 59**********************99999996666555444337***************9997652222444499*******97777777777766666 PP

                 HHTHHHH CS
   Epimerase  90 knlqgtl 96 
                 + +q++l
  KKY15942.1 114 EVIQVNL 120
                 5555554 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
                 HHHHHHTT-STTEEEEES CS
   Epimerase 224 lvlehvdagdkgeiyniG 241
                 ++l+++d+ d g i+niG
  KKY15942.1 133 HLLTKPDSRDRGAIINIG 150
                 6899****9*9******9 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHHHHHHHT-EEE CS
   Epimerase 141 pYaaaKlageklveayaaqyglnai 165
                 +Yaa+K  + ++++ + ++   + i
  KKY15942.1 163 AYAASKGGVAQMTKTFSNEWSSKGI 187
                 6888888888888888877765544 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.2e-05     0.026      32      76 ..       8      53 ..       2      89 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.2e-05
                  S-GTTSEEEEES-SH.HHHHHHHHHHHTT-EEEEESSSHHHHHCHH CS
  2-Hacid_dh_C 32 kelsgktvGiiGlGr.IGqavakrlkafgmkviaydrskkkeeeee 76
                   +l+gkt  i G+ r IGq++a  l++ g+++i ++r +k++++ e
    KKY15942.1  8 FSLRGKTALITGATRgIGQSMAVALAEAGADIILVQRDEKNKQTYE 53
                  579*********9977**********************99877332 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.1e-05      0.06       1      71 [.      16      79 ..      16     108 .. 0.85
   2 ?   -3.3   0.0       3.7   4.4e+03       7      30 ..     195     218 ..     193     227 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.1e-05
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHH CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerll 71
                   LiTG +  iG+ +a  L e g +++ + r++++   ++ e++a+     l ++++++ ++l Ds+++e ++
     KKY15942.1 16 LITGATRGIGQSMAVALAEAGADIILVQRDEKN--KQTYEKIAS-----LGRRVTIYTAELGDSKAVEGIV 79
                   9**********************9877666554..556666654.....46799*************9987 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.7
                    SHHHHHHHHHHHHCT-CCEEEEEE CS
  GDP_Man_Dehyd   7 GfiGsylaelLlekgyevhgivrr 30 
                    G+iG  + e L++++ +   i +r
     KKY15942.1 195 GYIGTDMNEALIANEARARQILER 218
                    999999999999998888777665 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.2e-05      0.11      33      77 ..       9      53 ..       4      87 .. 0.87
   2 ?   -2.0   0.0       1.7     2e+03     135     146 ..     166     177 ..     157     182 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.2e-05
                   --TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHH CS
  THF_DHG_CYH_C 33 elegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeit 77
                   +l+gk++++ G+ + +g+++a+ L+e++a + ++++  k+ +++ 
     KKY15942.1  9 SLRGKTALITGATRGIGQSMAVALAEAGADIILVQRDEKNKQTYE 53
                   799****************************99998887766554 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.7
                    -TTTSCHHHHHH CS
  THF_DHG_CYH_C 135 PvpgGVGpmTva 146
                      +gGV +mT +
     KKY15942.1 166 ASKGGVAQMTKT 177
                    5689*****976 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   7.1e-05     0.085       1      70 [.      23     100 ..      23     104 .. 0.76
   2 ?   -3.5   0.0         8   9.6e+03      28      41 ..     125     138 ..     115     147 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.1e-05
                 HHHHHHHHHHHHTT-EEEEEESSHHHH...HHHHHTTESEEEET...TTCH...HHHHHHHHTT.TSSEEEEEESSCSHH CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseekl...elakklGadeviny...kead...lverikeltg.gegvdvvfecvGsga 70 
                 g+G+    +++ +Ga +i v ++e++    e+ ++lG  ++i +      d   ++  +  l + g   d+ ++c+G+++
  KKY15942.1  23 GIGQSMAVALAEAGADIILVQRDEKNKqtyEKIASLGRRVTIYTaelG--DskaVEGIVPNLVKqGHSMDILVNCAGIQR 100
                 7887777777778***********987566888889********4442..32225555666666699**********765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 8
                 HHHHHTTESEEEET CS
  ADH_zinc_N  28 elakklGadeviny 41 
                  l++++Ga+ +  +
  KKY15942.1 125 TLCRDFGAHLLTKP 138
                 46777777766555 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1     6e-05     0.072      57     117 ..      15      75 ..       3      95 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6e-05
                 EEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-EEEEECCHHHHHHHH CS
        PALP  57 tvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGaevvevggdydeavaa 117
                  ++++ +   g+++A a a +G + ++v  + ++++  +++ +lG +v+ +  +  +++a+
  KKY15942.1  15 ALITGATRGIGQSMAVALAEAGADIILVQRDEKNKQTYEKIASLGRRVTIYTAELGDSKAV 75 
                 3444444458*****************************************8877777665 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.9   2.3e+03      24      43 ..      27      46 ..      25      74 .. 0.62
   2 ?    0.6   0.0      0.31   3.6e+02      20      50 ..      73     102 ..      61     133 .. 0.67
   3 ?    9.4   0.0   0.00065      0.77      13      50 ..     166     204 ..     159     228 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.9
  Glyco_transf_5 24 aLpkaLaklghdvrvilPry 43
                    +++ aLa++g d+ ++  + 
      KKY15942.1 27 SMAVALAEAGADIILVQRDE 46
                    56778888887776665444 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.31
  Glyco_transf_5  20 dvvgaLpkaLaklghdvrvilPrygaikeek 50 
                     ++v+++   L k+gh +++++ ++  i++++
      KKY15942.1  73 KAVEGIVPNLVKQGHSMDILV-NCAGIQRRH 102
                     478999999*******99998.555666655 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00065
  Glyco_transf_5  13 aktGGLadvvgaLpkaLaklghdvrvilPry.gaikeek 50 
                     a  GG+a++++ ++++ + +g +v  i P+y g+  +e+
      KKY15942.1 166 ASKGGVAQMTKTFSNEWSSKGIRVNAIAPGYiGTDMNEA 204
                     678****************************87766655 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.3e-05       0.1       2     101 ..      16     112 ..      15     132 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.3e-05
                      EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHH.HHTT...T-SEEEE------HHHH CS
  Polysacc_synt_2   2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerle.kalee.lkvdvvfhaAAlKhVPlv 93 
                      l+tGa+  iG+++   +++   + iil++rdE++ ++ ek    +l  ++++++ ++ +gd +  e +  +++++ +++d+++++A + +    
       KKY15942.1  16 LITGATRGIGQSMAVALAEA-GADIILVQRDEKNKQTYEKIA--SLG-RRVTIY-TAELGDSKAVEGIVpNLVKQgHSMDILVNCAGIQRRHPS 104
                      8***********99877665.56899*******998887754..233.344344.567777777665431334333778888888887777777 PP

                      HHSHHHHH CS
  Polysacc_synt_2  94 eenpleai 101
                      e++p+e +
       KKY15942.1 105 EKFPMEDW 112
                      77776654 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   0.00012      0.14       2      59 ..      16      76 ..      15     112 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
                EESSTTSHHHHHHHHHHHHHT-EEEEEES-S.-SHHHHHHHHSTTEEE..ES-TT-HHHHH CS
        NmrA  2 lviGaTGrqGksvvrallkaghkvralvRdt.kselakslkeaGvelv..kgdlddkeslv 59
                l++GaT  +G+s++ al++ag ++  + Rd+ ++++ +++++ G  +    ++l d + ++
  KKY15942.1 16 LITGATRGIGQSMAVALAEAGADIILVQRDEkNKQTYEKIASLGRRVTiyTAELGDSKAVE 76
                799***************************9667889999999964432588888876655 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00014      0.17       8      70 ..      23      90 ..      16      96 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
                HHHHHHHHHHHHHTHCEEEE-SCH....HHHHHHHHCEEEEETT...CEEEEEECEEECCHSCCCCS-ES CS
        ApbA  8 aiGsllaakLakagadvtlilrsr....rlealkknGlrltseg...geeilrppealsaeekselepid 70
                +iG+ +a+ La+agad++l+ r++     +e++ + G r+t+++   g+ ++ +  +++ +  ++++ +d
  KKY15942.1 23 GIGQSMAVALAEAGADIILVQRDEknkqTYEKIASLGRRVTIYTaelGDSKAVEGIVPNLV--KQGHSMD 90
                69*******************9753113467788888888888766666666555555555..4555555 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.13   1.5e+02      11      26 ..      78      95 ..      26     137 .. 0.64
   2 ?    7.2   0.0    0.0039       4.7       2      38 ..     169     210 ..     168     238 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.13
  Glyco_transf_4 11 LaraLarrGheVtvv..t 26
                    ++ +L ++Gh  +++  +
      KKY15942.1 78 IVPNLVKQGHSMDILvnC 95
                    344555666666555444 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0039
  Glyco_transf_4   2 GGverhvleLaraLarrGheVtvvtpgddgpleeev.....e 38 
                     GGv+ ++ ++++++  +G++V  ++pg+ g   +e       
      KKY15942.1 169 GGVAQMTKTFSNEWSSKGIRVNAIAPGYIGTDMNEAlianeA 210
                     9***************************99998884443330 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00017       0.2       3      96 ..      15     134 ..      13     137 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00017
                    EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT....................T--TTSHHHHHHHH.....HHH--SEEEE------HHHHHHSHHH CS
  RmlD_sub_bind   3 ilvtGanGqlGseLakqlaeeglevlaltre....................eldltdaeavaell.....keakpdvvvnaAAytavDkaEseeea 73 
                     l+tGa+  +G+ +a +lae+g++++ ++r+                    +++l d++av+ ++     + ++ d++vn+A  ++    E+ + +
     KKY15942.1  15 ALITGATRGIGQSMAVALAEAGADIILVQRDeknkqtyekiaslgrrvtiyTAELGDSKAVEGIVpnlvkQGHSMDILVNCAGIQRRHPSEKFPME 110
                    69**************************99978888888888888888888888888888887777777777888999999998888888887543 PP

                    H.HHHHTHHHHHHHHHHHHCT-EE CS
  RmlD_sub_bind  74 a.yavnaeavealAeaaaavgalL 96 
                    + ++v +    ++  +++  ga+L
     KKY15942.1 111 DwNEVIQVNLSTVFTLCRDFGAHL 134
                    313344444555666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:00.54
# Mc/sec: 1446.38
//
Query:       KKY15943.1  [L=444]
Description: putative metalloreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-22   80.3   6.7      2e-22   79.6   6.7    1.4  1  Ferric_reduct  Ferric reductase like transmembrane component
    5.7e-14   52.5   0.0    3.9e-11   43.3   0.0    2.2  2  NAD_binding_6  Ferric reductase NAD binding domain
    5.5e-12   45.7   0.0      4e-07   30.1   0.0    2.4  2  FAD_binding_8  FAD-binding domain
  ------ inclusion threshold ------
       0.09   13.4   0.0       0.19   12.4   0.0    1.6  1  NAD_binding_1  Oxidoreductase NAD-binding domain


Domain annotation for each model (and alignments):
>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   6.7   4.5e-26     2e-22      10     124 ..       2     113 ..       1     114 [. 0.95

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 4.5e-26
  Ferric_reduct  10 plalllalRnnflepltglsldklllfHkwlgvlafllallHvilyllnflrfsaldeerlldsllkkpynllGvlalllliilaitSlkfirrrl 105
                     l++ la+Rnn+l pl+++++d+++l+H+w+g++++l a++H+ ++++n+++     +++  +  lk+ +  +G +++++++i+ai S +++r + 
     KKY15943.1   2 VLLVALAGRNNPLIPLLKVNFDTFNLLHRWIGRIVILEAIAHTCAWAVNAFAAR--GSNNAMEGVLKDQFLFWGAVGTVAMMIIAIQSSSPLR-HA 94 
                    5677799*******************************************9866..599**********************************.** PP

  Ferric_reduct 106 syelFyylHhllyvaylll 124
                    +ye+F  lH++l+++ +l+
     KKY15943.1  95 FYETFIHLHQFLAFMTILG 113
                    ***************9997 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   8.8e-15   3.9e-11       2      91 ..     295     385 ..     294     392 .. 0.93
   2 !    7.1   0.0    0.0012       5.4     136     155 ..     407     426 ..     395     427 .. 0.88

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 8.8e-15
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   2 envllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeekse.gnieihiYlTseyeaedasdqlissi 91 
                     +vll agG Git  +  +++l++  ++ ++ t++i l+w+v+  ++l w++  ++e+ +++ +   ++i+ ++T+ ++ ++ ++ +++++
     KKY15943.1 295 GTVLLFAGGAGITHHLVQIRHLIACASAGTVATRRIVLVWSVKTVDQLAWVQPWMDEILSMEGRrEMLRIRLFVTKPRNPNEIRSPSTTVQ 385
                    689****************************************************99988888879***********99999998888775 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0012
                    xxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 136 svgvfvCGppklvkevkklv 155
                     ++v vCGp ++++ev+++v
     KKY15943.1 407 ATAVSVCGPGAFTDEVRHAV 426
                    5789*************986 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0     9e-11     4e-07       5      61 ..     159     212 ..     155     215 .. 0.88
   2 !   13.1   0.0   1.7e-05     0.076      61     106 ..     246     286 ..     239     289 .. 0.89

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 9e-11
  FAD_binding_8   5 skakvalleedliklkvskpkkslkykaGqyvyinipslsklfwqsHPFtiasaped 61 
                    + ++v+ l+++  +++++ p +    k+G++vyi++p++s   w sHPF++a +  d
     KKY15943.1 159 TTVSVKALQGEACRVTFHLPRR-VIIKPGSHVYIYVPRIS--GWMSHPFSVAWTDTD 212
                    668899999************9.9****************..78*******876555 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.7e-05
  FAD_binding_8  61 ddklslvikvksgltkklakkllssskkelenkkaklkvlidGPYG 106
                      ++sl+i+++ g+t+k+++k + +    + n++ +l+ l++GPY+
     KKY15943.1 246 STSVSLIIQARTGFTRKIYEKACIA----P-NNTLNLTGLVEGPYS 286
                    6789******************998....6.99************7 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.2e-05      0.19       2     108 ..     300     423 ..     299     424 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.2e-05
                    EEEGGGGHHHHHHHHHHHHHCT....TCSEEEEEEEESSGCGSTT....HHHHHHHHHHCTT.EEEEEEE.......ESSCTTTSSSEESSHHHHH CS
  NAD_binding_1   2 iagGtGiaPvrsvlraileeak....dktkvvlvyGnrteedlly....reeleelakklpg.rlkvvav.......vsreeagweggkgrvqdal 81 
                     agG Gi+  +  +r++++ a+     ++++vlv+ ++t ++l+      +e+ +++ +++  r++++ +        + ++ + ++  gr q  +
     KKY15943.1 300 FAGGAGITHHLVQIRHLIACASagtvATRRIVLVWSVKTVDQLAWvqpwMDEILSMEGRREMlRIRLFVTkprnpneIRSPSTTVQMMAGRCQPGV 395
                    69*******9999999988855789999*************9985211134555555555557777777767777666666667777777777777 PP

                    HHHHHH.HSSTTEEEEEECSHHHHHHHH CS
  NAD_binding_1  82 leells.lkkeethvyvCGppgMikavr 108
                    + +++     + t v vCGp ++ + vr
     KKY15943.1 396 VMDAELpSRIGATAVSVCGPGAFTDEVR 423
                    77666678899*********99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:00.54
# Mc/sec: 2490.59
//
Query:       KKY15944.1  [L=563]
Description: putative aminotriazole resistance [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-30  105.9  36.7      2e-30  105.9  36.7    2.7  3  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   2.1   0.00019       3.5      10      56 ..     133     183 ..     122     186 .. 0.71
   2 !  105.9  36.7   1.1e-34     2e-30      68     352 ..     168     505 ..     165     506 .. 0.92
   3 !    4.3   1.4   0.00088        16     124     177 ..     492     557 ..     490     562 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00019
       MFS_1  10 larsi...lgpalplalaedlgispseigllltlyal.gaavaslplGrls 56 
                  ++si   l+++++++++++l+++ +ei ++ +  +l ++a++ l++G+ +
  KKY15944.1 133 GQSSIligLTSVITSHIGRSLNMTQAEITWINASSSLgAYAILCLIAGFAT 183
                 33333444555556699*************999999956699988889865 PP

  == domain 2  score: 105.9 bits;  conditional E-value: 1.1e-34
       MFS_1  68 glllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpk..eergraigllsagfslGailgpllggllasslgWravfyilaivslla 164
                 +l ++a+ +l++ fa++ +++ +l  l G+++++++p ++ l+  +++k   ++++a++++sag+ lG+++g+l++g+ +s ++Wr +f++ +++++++
  KKY15944.1 168 SLGAYAILCLIAGFATNAYYMDILTGLLGVASSGSVPPAMGLLGSIYKKpsARKNKAFACFSAGNPLGFVVGMLISGVSTSVANWRTSFWVTCVIYVFF 266
                 78889999788889777779****************************95459********************************************** PP

       MFS_1 165 fvlfllllpeepperkrkspkeee.......................kgtgpaplvp..................awkallkdpvl....w......il 212
                   ++++ +p ++ + ++++ ++++                       +g++p ++++                  aw+ ++k+p +    w      +l
  KKY15944.1 267 TAVAFWTVPPDEQQAAPFNRTTLKtfdflgallslagiglltsglsiAGDAPEGWKTpyvivflilgvflivgfvAWQGFFKHPLMplyiWkdrnfsLL 365
                 998888888888888888888888***********************7777777777888888888888888888888888888666666788888899 PP

       MFS_1 213 lialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliG 311
                 +++l l+f+gfsg +++l l++qe   +   + +++ +  +a++g+i+ ++ag +++++++++ ++++ l++  ++++l  +++ ++++ ++++ ++++
  KKY15944.1 366 VLILSLGFMGFSGNSFWLCLFFQEIKRFE-PIAIAARMLPMAIAGIIVNVIAGLVMHKISNKILMTIGSLGFCGCFALLSAMPADNNYWPFIFPALCLS 463
                 9999999**********************.7999999999*********************************************99999999999999 PP

       MFS_1 312 f.glgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 + g+ fvf  ++ ++++++pp+++  a ++ +ta  +++a+g
  KKY15944.1 464 VvGADFVFMVVNMYVMSSLPPSHQSIAGAILQTATRIVTAIG 505
                 99************************************9998 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.00088
       MFS_1 124 gllsagfslGailgpllggllasslg............Wravfyilaivsllafvlfllllpeepp 177
                 ++l++++ + +++g ++  +  +sl+            +ra+++++ +++ +++v++ +  ++++ 
  KKY15944.1 492 AILQTATRIVTAIGLGIQTAAFTSLSpsgsststdfkpYRAAWWVAMGAAGFSLVFVPFITVRRQG 557
                 89999999******9999999999999999***************999999999976666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 3393.96
//
Query:       KKY16018.1  [L=272]
Description: hypothetical protein UCRPC4_g06029 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0075   16.4   2.1      0.012   15.7   2.1    1.3  1  MCU            Mitochondrial calcium uniporter
  ------ inclusion threshold ------
       0.05   14.0   0.5       0.05   14.0   0.5    2.3  2  Fungal_TACC    Fungal Transforming acidic coiled-coil (TACC) 
       0.34   11.1   3.8       0.22   11.7   1.8    1.6  2  Cortex-I_coil  Cortexillin I, coiled coil
       0.85    9.8   8.7          5    7.4   0.1    3.1  3  Cnn_1N         Centrosomin N-terminal motif 1
          1    9.6   8.9        1.8    8.8   3.4    2.2  2  TMF_TATA_bd    TATA element modulatory factor 1 TATA binding
        7.4    6.8   8.1        1.3    9.2   4.1    1.8  2  JIP_LZII       JNK-interacting protein  leucine zipper II
        7.9    6.7  10.2        1.3    9.1   5.4    2.0  2  Cep57_CLD_2    Centrosome localisation domain of PPC89


Domain annotation for each model (and alignments):
>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   2.1   4.8e-06     0.012       5      81 ..     146     223 ..     143     229 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.8e-06
                 XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX-SSSSSSTSSSSSHHHHHHHHHHHHH-SHHHHHHHHTC CS
         MCU   5 ieaaavlsesgvvialst.lleeeeakvllrvkqlvkalesalnveeeqlkkereleekleelreelepleekkeeid 81 
                 ++++a lse+++++a+++  le+e+ + ++++++++++ +++++  ++ + ++r+le++le+ r+el ++   k+ ++
  KKY16018.1 146 AQVVASLSEQNNKLAVHNhSLENERHQLYQTINTIIREKNALMHSLDVVTFNHRRLEKQLEQCRKELGNMSYHKQLME 223
                 678999***********99999999*********************************************99888765 PP

>> Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.5     2e-05      0.05      37      76 ..     153     192 ..     149     193 .. 0.93
   2 ?   -0.2   0.4      0.56   1.4e+03      57      67 ..     201     211 ..     194     262 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2e-05
  Fungal_TACC  37 qkkldklelenkslkqeieqLkkqleaerkEKqeLlklld 76 
                  +++ +kl ++n+sl++e +qL +++++  +EK+ L++ ld
   KKY16018.1 153 SEQNNKLAVHNHSLENERHQLYQTINTIIREKNALMHSLD 192
                  567899******************************9998 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.56
  Fungal_TACC  57 LkkqleaerkE 67 
                  L+kqle  rkE
   KKY16018.1 201 LEKQLEQCRKE 211
                  44444444444 PP

>> Cortex-I_coil  Cortexillin I, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.8   8.7e-05      0.22       5      67 ..     146     212 ..     143     228 .. 0.82
   2 ?   -1.9   0.1       1.5   3.8e+03      29      57 ..     234     262 ..     205     270 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.7e-05
                    XXXXXXXXXHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cortex-I_coil   5 erleasknelanklaglenslesekvsr....eelikqkdelesllasleseaaerekrlreleakl 67 
                    +++ as +e  nkla  ++sle e+       + +i+ k+ l ++l ++  +  + ek+l + +  l
     KKY16018.1 146 AQVVASLSEQNNKLAVHNHSLENERHQLyqtiNTIIREKNALMHSLDVVTFNHRRLEKQLEQCRKEL 212
                    56779999****************965311226799************9999999999998776655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.5
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cortex-I_coil  29 kvsreelikqkdelesllasleseaaere 57 
                       r++l +   +l+  ++ l se +e  
     KKY16018.1 234 SARRQQLGQENFNLRLAFNNLMSEHEEAR 262
                    44455555555555555555555555544 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.4    0.0077        20      37      66 ..     148     177 ..     131     183 .. 0.82
   2 ?    0.9   0.3       0.2   5.2e+02      54      67 ..     200     213 ..     182     228 .. 0.70
   3 ?    7.4   0.1     0.002         5       8      26 ..     236     254 ..     230     269 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0077
      Cnn_1N  37 qkeellkenielkveveslqkelkekkkll 66 
                  + +l ++n +l v+++sl++e +++ + +
  KKY16018.1 148 VVASLSEQNNKLAVHNHSLENERHQLYQTI 177
                 5678999**************998877665 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.2
      Cnn_1N  54 slqkelkekkkllr 67 
                  l+k+l++++k+l 
  KKY16018.1 200 RLEKQLEQCRKELG 213
                 45556666665553 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.002
      Cnn_1N   8 qidkLkKENFdLKLriyfL 26 
                   ++L  ENF+L+L  + L
  KKY16018.1 236 RRQQLGQENFNLRLAFNNL 254
                 5679999******976555 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.3     0.022        56      17      45 ..     159     187 ..     145     195 .. 0.68
   2 ?    8.8   3.4   0.00071       1.8      22      87 ..     199     265 ..     188     268 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.022
  TMF_TATA_bd  17 lsseirrlEgElaslkeelerleaerdea 45 
                  l    ++lE+E ++l ++++++ +e++++
   KKY16018.1 159 LAVHNHSLENERHQLYQTINTIIREKNAL 187
                  44444667777777777777777777665 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00071
  TMF_TATA_bd  22 rrlEgElaslkeelerleaerdeareeivk.lmkeneelkelkkeleelekeleelqeryetlLell 87 
                  rrlE +l++ ++el +++  ++ ++++i k l++++ + ++l +e+ +l+  +++l +++e++  +l
   KKY16018.1 199 RRLEKQLEQCRKELGNMSYHKQLMEDDIRKgLVEDSARRQQLGQENFNLRLAFNNLMSEHEEARIIL 265
                  9***************************9846688999999999****************9998887 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   4.1   0.00052       1.3      10      70 ..     152     212 ..     147     227 .. 0.60
   2 ?   -2.1   0.1       1.8   4.7e+03       6      15 ..     250     259 ..     236     263 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00052
    JIP_LZII  10 LikENteLletknaLnvvkddLIarvdeLtsereiLreEleslqkakerlesrikelEeel 70 
                 L ++N++L      L+  +  L + +  +  e+++L + l+ ++ +++rle++++++ +el
  KKY16018.1 152 LSEQNNKLAVHNHSLENERHQLYQTINTIIREKNALMHSLDVVTFNHRRLEKQLEQCRKEL 212
                 5556666666666666666666666666666666666666666666666666666665554 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.8
    JIP_LZII   6 evenLikENt 15 
                 +++nL++E +
  KKY16018.1 250 AFNNLMSEHE 259
                 3456666654 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   5.4   0.00052       1.3       3      61 ..     147     212 ..     146     223 .. 0.86
   2 ?   -0.7   0.2       0.6   1.5e+03      27      36 ..     252     261 ..     233     270 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00052
  Cep57_CLD_2   3 aevktLqnrLdsltrklqvheeelkrLnk.......ERdsalrqLgvAyeelneLkaevealrkEL 61 
                  + v +L ++++ l  ++ + e e+ +L +       E +  +++L v   +++ L  ++e  rkEL
   KKY16018.1 147 QVVASLSEQNNKLAVHNHSLENERHQLYQtintiirEKNALMHSLDVVTFNHRRLEKQLEQCRKEL 212
                  567889999999999999999777777777777777*****************************7 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.6
  Cep57_CLD_2  27 krLnkERdsa 36 
                  ++L++E+++a
   KKY16018.1 252 NNLMSEHEEA 261
                  5566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       985  (0.0549389); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 1806.25
//
Query:       KKY16019.1  [L=614]
Description: putative telomerase-binding protein est1a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-08   32.2   1.6    7.8e-08   32.1   0.3    1.7  2  EST1_DNA_bind  Est1 DNA/RNA binding domain
  ------ inclusion threshold ------
       0.14   12.6   0.0       0.26   11.7   0.0    1.4  1  ALMS_motif     ALMS motif
       0.22    9.0   0.0       0.32    8.4   0.0    1.1  1  DUF3584        Protein of unknown function (DUF3584)
       0.38   11.4   5.3         22    5.7   0.1    3.9  5  EST1           Telomerase activating protein Est1
        2.2    8.8   5.5         25    5.4   0.7    2.3  2  Neprosin_AP    Neprosin activation peptide


Domain annotation for each model (and alignments):
>> EST1_DNA_bind  Est1 DNA/RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.2   4.3e+03     112     153 ..     132     169 ..      87     178 .. 0.63
   2 !   32.1   0.3   2.2e-11   7.8e-08       1     108 [.     209     300 ..     209     364 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.2
                    SSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  EST1_DNA_bind 112 lerevlkklqillseslkernlkdaslllkmllinifaienl 153
                    + r+ ++ + +ll+ +l e++      +l +++++++ + +l
     KKY16019.1 132 MWRHGIHSFLELLRHRLPESLE----HMLAFVYLAYSMMALL 169
                    4445555566666666655433....3555555555555444 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 2.2e-11
                    HHHHHHHHHHH-TTBHHHHHHHHHHHHHTT-HHHHHHHHHHHHHBSB--TTHHHHHHHHHT-TT-HHHHHHHHHHHHHTT---HHHHHHHHHHTTH CS
  EST1_DNA_bind   1 AlrYYllAaellPsnGepyNQlgviaiysedkldavYyylRSllssnpfptAkeNLellfekirkklekgenkqskeskqektpeellkrliilFl 96 
                    A+ +Y++Aa+  P++G+ +++l+v+a  +   ++  +yy+ +l++ +pf++A+e+  llf ++++ +e  ++            +  ++++   ++
     KKY16019.1 209 AAMWYNRAADKSPGVGRIQHHLAVLARPH--IVQQLFYYTKALVTLIPFQNARESIMLLFNQFLEPNETASQR-----------YYPVESA---LV 288
                    6779**********************987..9*******************************8765555433...........3334444...77 PP

                    HHHHHHHSTTTT CS
  EST1_DNA_bind  97 rlhgklftgtsf 108
                    + hg+ f + s+
     KKY16019.1 289 KSHGIMFVKGSI 300
                    777777777777 PP

>> ALMS_motif  ALMS motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.4e-05      0.26      55     126 ..      32     103 ..       8     108 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.4e-05
  ALMS_motif  55 lklrtkkkqatvplplsdnlfkpkeraisekEmhqrskriYnqLPEVkkkkeeekrkaeyksnRlkaelfkk 126
                 ++lr +   ++  +p  + +++p  r i++ +++++ k iY  L  V+kk  e  ++++ ++n+l  e ++ 
  KKY16019.1  32 IDLRMSDLLSESAQPPPEMFKQPFTRPITQDQLINEVKGIYAGLVVVEKKCVEIDQQQANTTNKLTNEQYQA 103
                 4455444444444455578999********************************************999985 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0     9e-05      0.32     124     175 ..      80     129 ..      58     135 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 9e-05
     DUF3584 124 elikelrnngiqvskllntteYRaiIqNdrsllgrerkelrelaaqfslcds 175
                 +   e+++++++++++l+ ++Y a I   +s  ++    lr+la ++++  +
  KKY16019.1  80 KKCVEIDQQQANTTNKLTNEQYQALIALHPSQHPSASPALRKLATKYAM--P 129
                 5556799************************99***************9..4 PP

>> EST1  Telomerase activating protein Est1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.5   8.8e+03      86     110 ..      86     112 ..      62     123 .. 0.50
   2 ?    0.8   0.0      0.19   6.8e+02       5      23 ..     131     149 ..     128     176 .. 0.90
   3 ?    5.7   0.1    0.0062        22     124     133 ..     183     192 ..     168     195 .. 0.90
   4 ?    4.4   0.1     0.016        56      31      96 ..     278     363 ..     254     416 .. 0.54
   5 ?   -2.9   0.0       2.7   9.7e+03       5      21 ..     521     538 ..     519     550 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.5
                 .....-----..----TTB--TTSHHH CS
        EST1  86 pekessekse..teseeeksslssseq 110
                 +++++++ ++  +e+ +  ++l++s++
  KKY16019.1  86 DQQQANTTNKltNEQYQALIALHPSQH 112
                 232222222222333344555555555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.19
                 HHHHHTHHHHHHHHHHHHH CS
        EST1   5 llWrkvyyevikllkkqlk 23 
                  +Wr+  +++++ll+++l 
  KKY16019.1 131 RMWRHGIHSFLELLRHRLP 149
                 69**************985 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0062
                 HHHHHHHHHH CS
        EST1 124 yLGDlaRYre 133
                 +LGDlaRYr 
  KKY16019.1 183 CLGDLARYRM 192
                 9*******96 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.016
                 ---H.HHHHHHH...........HHHHHHHHHHHHHHHHHHHHHHHH-B-...HTT.........................................-. CS
        EST1  31 kkkkpvekrklk...........lklvkflksaigfYqsliqrllsefel...elssvlkvilk.............................sktklp 86 
                 ++ +pve++ +k            +++ + k+  g+ +++i++  ++f++   e                                             
  KKY16019.1 278 QRYYPVESALVKshgimfvkgsiEEFETLVKEYLGVLNNYIEKVTAKFRVqgpE---------MavsilaavfafgdsqahlfqllhsqqsshA----- 362
                 666777777777222222223334445555555555555555555555544441.........0333333455566665555555554433332..... PP

                 ....------ CS
        EST1  87 ekessekset 96 
                          t
  KKY16019.1 363 ---------T 363
                 .........2 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 2.7
                 HHHHHTHHHH.HHHHHHH CS
        EST1   5 llWrkvyyev.ikllkkq 21 
                 llW+  yy++ + +l+++
  KKY16019.1 521 LLWTSNYYPQdFFSLQSL 538
                 69******9966666665 PP

>> Neprosin_AP  Neprosin activation peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.3    0.0074        27      12      62 ..      82     135 ..      80     139 .. 0.70
   2 ?    5.4   0.7    0.0069        25      23      68 ..     355     400 ..     347     406 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0074
  Neprosin_AP  12 CvdikkqpafdHplLknhkiqekpselpekakees...kekkekeksvtqlWhq 62 
                  Cv+i +q+a    +L n + q   + +p+++ ++s   ++  +k      +W++
   KKY16019.1  82 CVEIDQQQANTTNKLTNEQYQALIALHPSQHPSASpalRKLATKYAMPARMWRH 135
                  *********************988888855333333444444444555566665 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0069
  Neprosin_AP  23 HplLknhkiqekpselpekakeeskekkekeksvtqlWhqsgekCP 68 
                  H +   h   e p+elp+  +++ +++++k + v+q W+q+g + P
   KKY16019.1 355 HSQQSSHATTEIPEELPSPITQAPEDEEQKISDVKQYWTQHGLRQP 400
                  555556777777888886666666888889999********98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.54
# Mc/sec: 3453.76
//
Query:       KKY16020.1  [L=702]
Description: putative copper amine oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.5e-159  531.4   0.0   1.9e-159  531.0   0.0    1.1  1  Cu_amine_oxid    Copper amine oxidase, enzyme domain
    2.5e-09   37.2   0.0      5e-09   36.3   0.0    1.5  1  Cu_amine_oxidN2  Copper amine oxidase, N2 domain
     0.0016   18.8   0.0     0.0054   17.1   0.0    1.8  2  Cu_amine_oxidN3  Copper amine oxidase, N3 domain


Domain annotation for each model (and alignments):
>> Cu_amine_oxid  Copper amine oxidase, enzyme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  531.0   0.0  3.1e-163  1.9e-159       2     410 .]     253     659 ..     252     659 .. 0.97

  Alignments for each domain:
  == domain 1  score: 531.0 bits;  conditional E-value: 3.1e-163
                    ----TT---SEE....ETTTEEEETTEEEEEEEETTTEEEEEEEEETTEEEEEEEEEEEEEEEE--SSHHHHH-EEEGGGT.-SGGG-----TTTS CS
  Cu_amine_oxid   2 evvqpeGpsfkv....degnlvewqkWsfrvgfnrreGlvlhdvrykgrrilyrlslsemvvpYgdprppasrkaafDlgeyglGklansLelgcD 93 
                    +vvqpeG+sf+v    ++g+++ wqkW++rvgfn+reG+vl+dv y+gr+++yr+sls+m +pY+dpr+p+++k+afDlg+ g+G++an+L+lgcD
     KKY16020.1 253 QVVQPEGASFTVqkvgETGYTLAWQKWTLRVGFNQREGMVLYDVGYDGRPLFYRVSLSDMNIPYADPRHPYNKKSAFDLGDGGAGAMANDLKLGCD 348
                    89**********77766699**************************************************************************** PP

                    S-TT-EEEEEEEEE..TEEEEEEEEEEEEEEE-S-SEEEE-S....EEEE--EEEEEEEEEEETTEEEEEEEEE-TTS-EEEEEEEEE----EE-T CS
  Cu_amine_oxid  94 ClgeityldavladssgepvtiknaiCifEedagilwkHtdfrtgraevtrnreLvvrtiatvgNYdYifdyiFkqdGsievevratGilstaala 189
                    Clg+i+yl+++++ds g+pv+++n++Ci+E+d gi wkHt++rtgra+v+r+reLv+++i+tv+NY+Yi+++iF+q+G++++evratGilst++++
     KKY16020.1 349 CLGSIYYLNGWVNDSLGNPVEMPNCVCIHEQDGGIGWKHTNYRTGRASVVRSRELVLQSIITVANYEYILAFIFNQAGEMTYEVRATGILSTQPID 444
                    ************************************************************************************************ PP

                    .....GG--EEETTEE---EEEEEEEEEEE-T.SSEEEEEEEEE-T..TT.T-...-EEEEEEEEEE--BGGG-EE--.-GG-EEEEEEEEEEE-. CS
  Cu_amine_oxid 190 eeeeskygtrvapgvlasiHqHlfslrvDldidgeknsvveeelvpeepelgeenpagnafkvektvletekeaaldldpeknrvlkivnenkkn. 284
                    e+ + +ygt+v+pgvla +HqH+fslr+D+++dg  n+vv+ee++++ p l++ n +gn++++++tv++++  +a++ld+++nrv+ki n n++n 
     KKY16020.1 445 EGVDVPYGTVVHPGVLAVHHQHIFSLRLDPMLDGPLNRVVYEEAHAM-P-LDDFNYTGNGYYTKETVIDKS--TAINLDTQSNRVFKIQNANSRNp 536
                    88899*****************************99********996.5.5678*****************..889999999************** PP

                    TTS-EEEEEEE-S----..---SS-TTTTTTTGGGG-SEEEEE--TT---S--TTGG-TTS.---GGGG-.S--B-SSEEEEEEEEEEEEE---GG CS
  Cu_amine_oxid 285 klgepvgYklvpssaasqlllakesslvakraefakhhlwvtkykdselyaageynnqskgepvglakwvednesieneDlVvWvtlGltHvprae 380
                    + g+p +Yk+++  +  q++l +++s+  kraef +h+++vt+++d+elya g y+nqs+g  +g+++w++++++++++D+VvWv++G++Hvpr e
     KKY16020.1 537 INGKPIAYKIQA--PDFQKILSHPTSFNYKRAEFSSHNIFVTQHRDRELYAGGWYTNQSRGG-TGVRTWAARGDNVKDDDIVVWVSFGINHVPRIE 629
                    ***********9..66889******************************************5.7******************************** PP

                    GSS-TTTSEEEEEEEEES-SSS-GGGG-S- CS
  Cu_amine_oxid 381 DfPvmpvetvsflLkPvnFfdenpaldvpp 410
                    DfPvmp+e++s+++kPvnFfd+npa+dvpp
     KKY16020.1 630 DFPVMPCEKLSVHFKPVNFFDKNPAIDVPP 659
                    ****************************96 PP

>> Cu_amine_oxidN2  Copper amine oxidase, N2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   8.3e-13     5e-09       1      83 [.      20     108 ..      20     111 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 8.3e-13
                      HHHHHHHHHHHHHCCCCCCCCTCT-TTSEEEEEEEEE---HHHHHHHHHCH---.....S-EEEE..EEEEETSSSSEEEEEEEEEECCS CS
  Cu_amine_oxidN2   1 hpLdaltaaeinkvesilkssaletskknsffeveLeePdKkavlqflekgepp.....ppRkAs..vvilfGkqtkelvvdLatgklls 83 
                      hpL +l++ ei+ +  ilks+      +++f +++L eP+Kk+ + +l+ +++        RkA+  + i + + t+e++++L+t +l +
       KKY16020.1  20 HPLCPLSPNEIKHAGDILKSQW-PEDVQLRFKTITLFEPEKKLFMTYLDAEHNGkalpnVDRKAFltYMIKKTGVTHEAIINLSTRQLEH 108
                      9********************9.9999********************76555443453356***74478999999**********99976 PP

>> Cu_amine_oxidN3  Copper amine oxidase, N3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     9e-07    0.0054       4      80 ..     121     201 ..     119     214 .. 0.84
   2 ?   -3.2   0.0         2   1.2e+04      81      99 ..     518     536 ..     515     537 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 9e-07
                      -HHHHHHHHHHHHTGGGGHHHHHHHHTTT.T---EEEE--SS-SSST.T--EEEEEEEE--SSS......-GCGSEEE.EEEE CS
  Cu_amine_oxidN3   4 lleelaeieevikelpqfkealkkrgienldkvvltpltvgyrgeksegkRllkalvyyrtesa......nlyahPiegLell 80 
                      + ee  +ie++  e p++++ ++k  + + + v+ +p+  g +g+ + ++R+ +a +y+r+ s+      n ya P+    ++
       KKY16020.1 121 DYEEILAIERLALEHPDVRKEIEKLKLPEGTVVCADPWPYGSDGVDD-DDRMFRAFMYMRDPSNpsevdsNHYAFPLA-VSPV 201
                      57899999*****************9555699999************.***********9977666667788888876.5555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2
                      EE--SSSGGG-EEEEEEET CS
  Cu_amine_oxidN3  81 vDleakkvieitdqkvlvp 99 
                      +D+++ +v +i+  + + p
       KKY16020.1 518 LDTQSNRVFKIQNANSRNP 536
                      7999999999998886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 4228.56
//
Query:       KKY16021.1  [L=691]
Description: putative peroxisomal copper amine oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.9e-159  529.2   0.0   8.9e-159  528.8   0.0    1.1  1  Cu_amine_oxid    Copper amine oxidase, enzyme domain
    1.2e-22   80.2   0.2    3.7e-22   78.6   0.1    1.9  2  Cu_amine_oxidN3  Copper amine oxidase, N3 domain
    1.3e-11   44.5   0.0    2.3e-11   43.8   0.0    1.4  1  Cu_amine_oxidN2  Copper amine oxidase, N2 domain
  ------ inclusion threshold ------
      0.047   14.0   0.1       0.11   12.9   0.1    1.5  1  CzcE             Heavy-metal resistance protein CzcE


Domain annotation for each model (and alignments):
>> Cu_amine_oxid  Copper amine oxidase, enzyme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  528.8   0.0    2e-162  8.9e-159       1     410 []     238     656 ..     238     656 .. 0.97

  Alignments for each domain:
  == domain 1  score: 528.8 bits;  conditional E-value: 2e-162
                    .----TT---SEEETTTEEEETTEEEEEEEETTTEEEEEEEEETT......EEEEEEEEEEEEEEEE--SSHHHHH-EEEGGGT.-SGGG-----T CS
  Cu_amine_oxid   1 levvqpeGpsfkvdegnlvewqkWsfrvgfnrreGlvlhdvrykg......rrilyrlslsemvvpYgdprppasrkaafDlgeyglGklansLel 90 
                    ++++qpeG+sfkv +g+++ewq+Ws++vgfn+reG+vl ++++ +      r+i+yrlsl+emvvpYg+p++p++rk+afDlgeyg G+++nsL+l
     KKY16021.1 238 INITQPEGVSFKV-NGRTIEWQNWSVHVGFNYREGIVLNNISFYDkfekavRPIFYRLSLAEMVVPYGNPEHPHQRKHAFDLGEYGGGYMTNSLAL 332
                    689**********.8********************************************************************************* PP

                    TTSS-TT-EEEEEEEEE..TEEEEEEEEEEEEEEE-S-SEEEE-S....EEEE--EEEEEEEEEEETTEEEEEEEEE-TTS-EEEEEEEEE----E CS
  Cu_amine_oxid  91 gcDClgeityldavladssgepvtiknaiCifEedagilwkHtdfrtgraevtrnreLvvrtiatvgNYdYifdyiFkqdGsievevratGilsta 186
                    gcDC+g i+y+da +++++g+++tiknaiCi+Eedagil+kHtdfr++++ vtr+r+L++++i+t +NY+Y++++iF+qdG++++e+++tGil+t+
     KKY16021.1 333 GCDCKGAIHYMDADFVNRAGSVQTIKNAICIHEEDAGILFKHTDFRDDSTIVTRARKLIISHIFTAANYEYCVYWIFHQDGTVQLEIKLTGILNTY 428
                    ************************************************************************************************ PP

                    E-T......GG--EEETTEE---EEEEEEEEEEE-T.SSEEEEEEEEE-T...TT.T-...-EEEEEEEEEE--BGGG-EE--.-GG-EEEEEEEE CS
  Cu_amine_oxid 187 alaeeee.skygtrvapgvlasiHqHlfslrvDldidgeknsvveeelvp.eepelgeenpagnafkvektvletekeaaldldpeknrvlkivne 280
                    a++++e+ + +gt+v pgv+a++HqHlf+lr+D++idg +n+v ++++ +   +  ++en++gnaf+++kt+++t k a  d++ +++r+++++ne
     KKY16021.1 429 AMNPGEDtKGWGTEVYPGVNAHNHQHLFCLRIDPNIDGPNNTVFQVDAARgSGEVGSAENKYGNAFYAKKTKFTTPKGAISDYNGSTSRTWEMCNE 524
                    *****9548*****************************99********88765667779************************************* PP

                    EEE-.TTS-EEEEEEE-S----..---SS-TTTTTTTGGGG-SEEEEE--TT---S--TTGG-TTS.-.--GGGG-.S--..B-SSEEEEEEEEEE CS
  Cu_amine_oxid 281 nkkn.klgepvgYklvpssaasqlllakesslvakraefakhhlwvtkykdselyaageynnqskgep.vglakwvedne..sieneDlVvWvtlG 372
                     k n ++++pv+Yklv+++   + ll+ke+ lv+kra fa+h+++vtky+dsel++ag+++ q++gep  gl++w+e     +i+n+D+V+W+t+G
     KKY16021.1 525 GKLNpYSKKPVSYKLVSRE--VPDLLPKEGGLVWKRAGFARHAVHVTKYSDSELHPAGRHVPQTSGEPsMGLPQWIESTAtdNIANSDVVLWHTFG 618
                    *****************77..556*************************************99999889*******8654449************* PP

                    EEE---GGGSS-TTTSEEEEEEEEES-SSS-GGGG-S- CS
  Cu_amine_oxid 373 ltHvpraeDfPvmpvetvsflLkPvnFfdenpaldvpp 410
                    +tH+p +eD+Pvmp+e +++lL+P+nFf +np+ldvpp
     KKY16021.1 619 ITHFPSPEDYPVMPAEPMTLLLRPRNFFIKNPCLDVPP 656
                    ************************************96 PP

>> Cu_amine_oxidN3  Copper amine oxidase, N3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.1   9.2e+03      80      93 ..      92     105 ..      91     108 .. 0.88
   2 !   78.6   0.1   8.2e-26   3.7e-22       1     100 [.     111     212 ..     111     213 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.1
                      EEE--SSSGGG-EE CS
  Cu_amine_oxidN3  80 lvDleakkvieitd 93 
                      lvDl  +k+ +++ 
       KKY16021.1  92 LVDLADQKITKWEA 105
                      89*********985 PP

  == domain 2  score: 78.6 bits;  conditional E-value: 8.2e-26
                      S---HHHHHHHHHHHHTGGGGHHHHHHHH..TTT.T---EEEE--SS-SSST.T--EEEEEEEE--SSS.-GCGSEEE.EEEEEE--SSSGGG- CS
  Cu_amine_oxidN3   1 ppvlleelaeieevikelpqfkealkkrg..ienldkvvltpltvgyrgeksegkRllkalvyyrtesa.nlyahPiegLellvDleakkviei 91 
                      p +++e+l+++e+v++++p+++e++   g  +e++dkv+++p+t+gy+++ +++ Rl++al+yyr + + ++y+ P++ +++++D +++++i+i
       KKY16021.1 111 PLITMEDLQIVEHVVRKDPKVIEQCGIVGipPEEMDKVYCDPWTIGYDERFGSTVRLQQALMYYRPNVDdSQYTFPLD-FCPIFDADKQEIIHI 203
                      789**************************95666*******************************99888********.*************** PP

                      EEEEEEETT CS
  Cu_amine_oxidN3  92 tdqkvlvpv 100
                      ++++v++p+
       KKY16021.1 204 DIPEVRRPL 212
                      ****99986 PP

>> Cu_amine_oxidN2  Copper amine oxidase, N2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   5.2e-15   2.3e-11       1      86 [.      21     105 ..      21     106 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 5.2e-15
                      HHHHHHHHHHHHHCCCCCCCCTCT-TTSEEEEEEEEE---HHHHHHHHH..CH---S-EEEEEEEE.ETSSSSEEEEEEEEEECCSEEE CS
  Cu_amine_oxidN2   1 hpLdaltaaeinkvesilkssaletskknsffeveLeePdKkavlqfle..kgeppppRkAsvvil.fGkqtkelvvdLatgkllspry 86 
                      hp d+l++ ei+ ++s +++ +     ++  + v+L eP K+ +l +l+  ++ p p+R A+vv+  +G+q + ++vdLa +k+ ++++
       KKY16021.1  21 HPFDPLSSLEIETAVSVIRKEK----GQLFYNAVTLYEPLKAEMLSWLAdpEKAPKPKRIADVVAIaKGGQVYDGLVDLADQKITKWEA 105
                      9*****************9999....999******************761245555********6527*****************9975 PP

>> CzcE  Heavy-metal resistance protein CzcE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   2.4e-05      0.11      20      45 ..     233     258 ..     222     266 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.4e-05
        CzcE  20 pgtkyvnVesGEtvafkvggktvaWt 45 
                  ++k++n++  E v fkv+g+t+ W+
  KKY16021.1 233 TDIKPINITQPEGVSFKVNGRTIEWQ 258
                 579**********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 4372.42
//
Query:       KKY16022.1  [L=211]
Description: hypothetical protein UCRPC4_g06033 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-35  122.5   0.1    1.8e-35  122.4   0.1    1.0  1  Aminotran_3  Aminotransferase class-III


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   0.1     1e-39   1.8e-35     235     406 .]       1     193 [.       1     193 [. 0.94

  Alignments for each domain:
  == domain 1  score: 122.4 bits;  conditional E-value: 1e-39
                  TTTTTTTSSSSGGGGCTS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTS....B--TTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH CS
  Aminotran_3 235 qtGfGrTGklfAlehagvspDlmtlaKaltgG.lplsavlataevmqalapgs....hgsTfgGnplacavalavleiieeekllenaqelgaalkeg 327
                  ++G+G TGk+ A e  g++pD+ t++Kal++G +pls vla++++ ++la+gs    hg+Tf + p aca+a+av +ii+++++l+n++ +g++l+++
   KKY16022.1   1 MCGLGKTGKMHAWEDEGIAPDIQTIGKALGAGfIPLSGVLANQKIFDVLANGSgtlvHGHTFQAHPTACAAAVAVQKIIKRDNVLDNVRLMGNILEAE 98 
                  69******************************99**************************************************************** PP

                  HHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC..........HHHHHHHHHCTEE-E.EETT......TEEEE---TT--HHHHHHHHHHHHHHH CS
  Aminotran_3 328 LeelqkkyevikevRgkGlmiaielkeeaevke..........keilkkakekGvlil.saGd......nvirllppliitdeeidelleilkkal 406
                  L++      +++++ g+Gl+ a+e+ ++  +            ++i++ a++ G++il ++G+      +++ + pp+ii+++e++ ++  lk+a+
   KKY16022.1  99 LRREIGGLPYVGDIHGRGLFWAVEFMQDTAK-MipfdpayqfsNRIIAVARDLGLNILgNLGKtgeidvELVIICPPYIINANEVKTVVALLKQAV 193
                  *99888888******************9994.359********99**********9863456666699999*****************99999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1556.68
//
Query:       KKY16023.1  [L=306]
Description: putative malate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-24   84.6   0.6      9e-24   84.6   0.6    2.3  2  DUF3455     Protein of unknown function (DUF3455)
  ------ inclusion threshold ------
      0.022   12.9   1.1       0.03   12.5   1.1    1.1  1  DUF4954     Domain of unknown function (DUF4954)


Domain annotation for each model (and alignments):
>> DUF3455  Protein of unknown function (DUF3455)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.23   2.1e+03      45      45 ..     111     111 ..      38     156 .. 0.64
   2 !   84.6   0.6     1e-27     9e-24       6     158 .]     177     305 ..     171     305 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.23
     DUF3455  45 l 45 
                  
  KKY16023.1 111 A 111
                 1 PP

  == domain 2  score: 84.6 bits;  conditional E-value: 1e-27
     DUF3455   6 lalvalgrGtqnYtCaasaagaaeptavgavAtLfdatclaaklpdlleslpslvaelklvgkhfftdgtgPtfdldldgskvtgkkvasvaApkdaag 104
                  +    g+GtqnY C++ a++aa p+ +ga+A+L+ +   a++                  g h f++ t+P fd++  g+++++k+ + va p+ + +
  KKY16023.1 177 YVGSFNGSGTQNYDCTDLASTAA-PSSIGADANLTST---ASCG----------------TGIHSFDNPTSPRFDMSSLGNTLASKNTT-VASPDGS-S 253
                 5556789********66666666.************9...7777................899****9999******999988888888.6777765.* PP

     DUF3455 105 avawllltakesgtlsgvtevyRveTaGGsapatCekagekfeveYaAeYvFyg 158
                 ++aw +lta +  +++++ + yRv+T GG ap+ C +++++++veY+A+Y+Fy+
  KKY16023.1 254 NIAWVYLTAVD--STGDIVQLYRVDTVGGVAPSVCGNETGVVRVEYQATYMFYQ 305
                 ********977..8999************************************6 PP

>> DUF4954  Domain of unknown function (DUF4954)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.1   3.3e-06      0.03     169     248 ..      75     158 ..      68     172 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.3e-06
     DUF4954 169 kksevGeigekvkilnaglikNvkigdyatiega....sklengtinSskeapveiGegViledfiissGskikdgavisrcfv 248
                 k+++ G+    ++ l a++i  ++ig  +ti+ +    ++l  +t++ ++ a ++i  + i++ +i +sG++++ +a++ +c+v
  KKY16023.1  75 KATTLGATTVAATTLPASTIPATTIGTLTTISATtvaaTTLAATTVSATTIAATTITVSTIASTSISTSGNTVASSAKVLDCVV 158
                 55666777777778888999999999999998652222689*****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       939  (0.0523733); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2060.83
//
Query:       KKY16024.1  [L=303]
Description: putative cell wall integrity and stress response component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.6e-07   28.4   1.5    1.5e-06   27.5   1.5    1.5  1  SKG6          Transmembrane alpha-helix domain
    6.2e-05   23.2   0.2    0.00015   21.9   0.2    1.6  1  Podoplanin    Podoplanin
    0.00012   21.7   0.0    0.00022   20.7   0.0    1.4  1  Rax2          Cortical protein marker for cell polarity
  ------ inclusion threshold ------
       0.02   14.7   0.4       0.04   13.7   0.4    1.5  1  Adeno_E3_CR2  Adenovirus E3 region protein CR2
       0.42   10.6   2.5       0.76    9.7   2.5    1.3  1  Syndecan      Syndecan domain


Domain annotation for each model (and alignments):
>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   1.5   4.3e-10   1.5e-06       2      36 ..     147     181 ..     146     183 .. 0.95

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 4.3e-10
        SKG6   2 sdssnsntvaIavaVaVPVaViiivLlailifvrR 36 
                 s++++s+++  ++aV+V ++V  i+++++l+++rR
  KKY16024.1 147 SSNGLSKGAVAGIAVGVALGVTMIAVIILLFLWRR 181
                 8999******************************9 PP

>> Podoplanin  Podoplanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.2   4.3e-08   0.00015     100     155 ..     126     180 ..     115     186 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 4.3e-08
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Podoplanin 100 ttlnvvtshstekvgeetettvekdGLatvtLvgiivGvllaigfiggiiivvvrk 155
                 t ++ +ts s +  g+  +     +GL+  ++ gi vGv l++ +i+ ii++++++
  KKY16024.1 126 TPSSSATSDS-SPLGQGASNDSSSNGLSKGAVAGIAVGVALGVTMIAVIILLFLWR 180
                 5567789998.6667766667789**************************998754 PP

>> Rax2  Cortical protein marker for cell polarity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   6.2e-08   0.00022     136     199 ..     120     190 ..      83     196 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 6.2e-08
        Rax2 136 issifleksnsfssssdlk.........kkkkklsrgfVVlIgLAlALgtvallgllgiilayirkkregyep 199
                 +s+i++  s+s +s s  +         ++++ ls+g+V +I+ ++ALg++++ +++ ++l +  kkr+   +
  KKY16024.1 120 VSTIIVTPSSSATSDS--SplgqgasndSSSNGLSKGAVAGIAVGVALGVTMIAVIILLFLWRRMKKRRAEAE 190
                 4455555333333211..122456666699***************************9999997777766544 PP

>> Adeno_E3_CR2  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.4   1.1e-05      0.04       7      35 ..     158     186 ..     153     189 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
  Adeno_E3_CR2   7 aIivaVvvGlaiIiicmlyYaCcYrkhra 35 
                   +I v+V++G+  I+  +l++  ++ k r+
    KKY16024.1 158 GIAVGVALGVTMIAVIILLFLWRRMKKRR 186
                   7889*******************998885 PP

>> Syndecan  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.5   0.00021      0.76       6      36 ..     153     184 ..     151     187 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00021
    Syndecan   6 pevlaaviggvvvgllf.aillvlflvYRmrK 36 
                 ++ +a++ +gv +g+ + a++++lfl  Rm+K
  KKY16024.1 153 KGAVAGIAVGVALGVTMiAVIILLFLWRRMKK 184
                 67789*******99866155555666667988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       870  (0.0485247); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2050.41
//
Query:       KKY16025.1  [L=538]
Description: putative glycerol kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-73  245.2   0.9      8e-73  244.4   0.9    1.4  1  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom
    5.6e-66  222.6   0.0    8.1e-66  222.1   0.0    1.2  1  FGGY_N    FGGY family of carbohydrate kinases, N-terminal dom


Domain annotation for each model (and alignments):
>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.4   0.9   8.9e-77     8e-73       1     197 [.     273     463 ..     273     464 .. 0.98

  Alignments for each domain:
  == domain 1  score: 244.4 bits;  conditional E-value: 8.9e-77
      FGGY_C   1 akvslGTssflll.vgtkpvisehglltpva..gedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvfvpafs 96 
                 ak+++GT++fll+ vg+kpvis+hgll++va      kp+yalegsiavags v++l++nlg+   +rd+++v + +a     ++v d+gg+vfv+afs
  KKY16025.1 273 AKNTYGTGCFLLYnVGEKPVISKHGLLATVAyaFTGMKPVYALEGSIAVAGSSVKFLMNNLGF---FRDSSKV-SEVA-----SSVKDNGGCVFVTAFS 362
                 79*****************************6544489*************************...*******.****.....9*************** PP

      FGGY_C  97 glrapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilAa 195
                 gl+apyw +da+gti+g+++ t+ +hiarA+lea+++q++ailea+ekds ++l++lavdGG+s+++l mq++Ad++++pV rp+++e+talGaAi+A+
  KKY16025.1 363 GLFAPYWIDDAKGTIFGITQFTQRGHIARATLEATCFQTKAILEAMEKDSSHKLQELAVDGGMSNSNLTMQTQADLIQIPVNRPQMRETTALGAAIAAG 461
                 *************************************************************************************************** PP

      FGGY_C 196 va 197
                 +a
  KKY16025.1 462 FA 463
                 98 PP

>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.1   0.0     9e-70   8.1e-66       1     245 []      10     264 ..      10     264 .. 0.95

  Alignments for each domain:
  == domain 1  score: 222.1 bits;  conditional E-value: 9e-70
                 EEEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHC...T.-GCCEEEEEEEE-SS-EEEEETTT.EESSEE CS
      FGGY_N   1 lilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqa...gisekqikaIgisgqreglvllDknd.kpLyna 95 
                 ++ ++D Gtts++++++d+ g+ va++q+e+++++p+ gw+e+dp ei +++ ++i ++ ++    g ++++ikaIgi++qre++v++D ++ +pL na
  KKY16025.1  10 YLGAIDNGTTSSRFLIFDKAGTPVAAHQIEFQQHYPHSGWHEHDPLEIVKSVEDCIVEATKRFeelGHTKDEIKAIGITNQRETTVVWDSETgEPLHNA 108
                 5679****************************************************999887766699************************9****** PP

                 E-TT--TTHHHHHHHHHTTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHC....EEEEHHHHHHHHHCT....--EEEHHHHCTTTSEETTTT CS
      FGGY_N  96 ilwkdrrtaeiveklkeegnekklyektglvlstgftlsklkWlkenepevfekie....kflliddyLiwrLtg....qfvtdvtnasesmlfnikkl 186
                 i+w d+rta+i+++lk+  +++kl e  gl++st+ + +kl+Wl++++  v ++ e    +f+++d++L + L g    +fvtd tnas++m++ni+kl
  KKY16025.1 109 IVWTDTRTASIARELKQRDGADKLPELCGLPISTYPSCTKLTWLLRHNHRVKAAYEagrlAFGTVDTWLVYNLNGrdknVFVTDTTNASRTMFMNIHKL 207
                 ************************************************99999999999**************************************** PP

                 EE-HHHHHHTT--GG..GS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 187 ewdeellailgipee..lLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                 e+d+ l++++g+++   +LPk+v+ss      k++ +  +G  +gv   g++gDq+aa++G
  KKY16025.1 208 EYDDTLINFFGLDRTkiHLPKIVKSSDP----KQYGSIGSGPLKGVRLTGCLGDQSAALVG 264
                 *************9999********964....5666667777789**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.49
# Mc/sec: 3324.01
//
Query:       KKY16026.1  [L=460]
Description: putative dolichyl-di-phosphooligosaccharide-protein glycotransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.2e-160  532.4   0.0   8.3e-160  532.2   0.0    1.0  1  DDOST_48kD  Oligosaccharyltransferase 48 kDa subunit beta
  ------ inclusion threshold ------
       0.14   12.0   0.0       0.27   11.1   0.0    1.4  1  DUF928      Domain of Unknown Function (DUF928)


Domain annotation for each model (and alignments):
>> DDOST_48kD  Oligosaccharyltransferase 48 kDa subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  532.2   0.0  9.3e-164  8.3e-160       1     413 [.      26     455 ..      26     457 .. 0.97

  Alignments for each domain:
  == domain 1  score: 532.2 bits;  conditional E-value: 9.3e-164
  DDOST_48kD   1 vLvvldseaekeeyskflksLeergfeltfksakdeslsLfkygerkYdhlillapkvkelgksltpkallefvnkggniLvalsssk.lpesirslls 98 
                 +Lvvl+++ ek ++s+f+++Le rg++l+f+s+k+e+++Lf++ge +Ydhl+l +pk+k++g+sltpk +l+fvn+ggn+++als s+ +p++i+sll 
  KKY16026.1  26 LLVVLEES-EKPSFSQFWTDLEGRGYDLAFESPKSEKIALFTHGELAYDHLLLTPPKTKGFGPSLTPKIILDFVNAGGNVVLALSASSsTPSAITSLLL 123
                 69999998.8***************************************************************************9999********** PP

  DDOST_48kD  99 elgiels.ergskvvDhfnydsesdaekhdvlllsspeellakvknifsekkkeeevlf..rgvgallgn.nplllpiLrapstsysydpkeeeesaee 193
                 el+i+ + +r+s+vvDhfnyd++s++++hdvll+s+p++l+++vkn+f+    ++ vl+  ++vg++lgn +pll+piL+ap+t+y+y+pke++es e+
  KKY16026.1 124 ELDIHTApDRNSVVVDHFNYDATSASDNHDVLLVSRPNALRPDVKNFFG----GSGVLAlpHTVGQTLGNtSPLLAPILTAPETAYTYNPKEDAESGED 218
                 *****9989****************************************....44566668************************************** PP

  DDOST_48kD 194 afavGsqlslvaalQarnnaRvvfvGslellsdeffdakvk....kkeksgnrefakdltkWtfqekgvlrvksvehhkee........eeeenpeiYr 280
                  fa+G+qlslv+a+Qarn+aR++++Gs e+l+d++fda+vk    ++ k+ nrefa++lt Wtf+e+gvl+v s++h+ ++         +  np+iYr
  KKY16026.1 219 LFATGKQLSLVSAMQARNSARFTVLGSFEMLQDRWFDASVKgpagNRIKTVNREFAQQLTGWTFKETGVLKVGSINHYLTSdavqntsaVDLLNPDIYR 317
                 *********************************************9********************************6665999888866789***** PP

  DDOST_48kD 281 ikdevtYsielseysndkwvPfea...ddlqLefvmLdPyirltLkpkkssedatvYstkfklPDrhGvFkFkvdYkRpgltyieekttvsvrhlahde 376
                 ik++vt++i+lseys+++wvPf++   ddlqLef+mL+P++rl+L+p ++++++t+Yst+f+lPD+hG+F+F+v+YkRp+l++++ek+tv+vrh ah+e
  KKY16026.1 318 IKNDVTFEISLSEYSHTHWVPFTVpsdDDLQLEFTMLSPFHRLPLHPISQTANSTLYSTSFTLPDQHGIFTFRVNYKRPFLSNVDEKRTVTVRHYAHNE 416
                 **************************999******************99888*********************************************** PP

  DDOST_48kD 377 ypR..fissAwpYyasafsvvvgfllFvalflyskeekk 413
                 +pR   is+ w+++a+++sv+ gf++Fv l+ly ++ k+
  KKY16026.1 417 WPRswKISGGWVWIAGLWSVIGGFIAFVGLWLYCESPKR 455
                 *********************************998775 PP

>> DUF928  Domain of Unknown Function (DUF928)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.1e-05      0.27      38      85 ..     339     398 ..     303     428 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.1e-05
      DUF928  38 fyvPsesakevefvl............qdeegeevyqttlalpkkpgIisitlpenappL 85 
                 f vPs+++ ++ef++             +  ++++y+t+++lp++ gI+ +++  + p L
  KKY16026.1 339 FTVPSDDDLQLEFTMlspfhrlplhpiSQTANSTLYSTSFTLPDQHGIFTFRVNYKRPFL 398
                 66788789999999999999999998644444569*****************99887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 3033.56
//
Query:       KKY16027.1  [L=942]
Description: putative rsc complex subunit rsc9 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-20   72.1   0.0    1.3e-19   70.6   0.0    1.9  1  ARID             ARID/BRIGHT DNA binding domain
  ------ inclusion threshold ------
      0.013   16.1   0.7       0.12   13.0   0.0    2.5  3  RFX_DNA_binding  RFX DNA-binding domain
      0.015   15.2   0.0      0.031   14.2   0.0    1.5  1  BssB_TutG        Benzylsuccinate synthase beta subunit
      0.015   13.9   0.1       0.02   13.5   0.1    1.2  1  Adaptin_N        Adaptin N terminal region


Domain annotation for each model (and alignments):
>> ARID  ARID/BRIGHT DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   2.9e-23   1.3e-19       1      90 []      16     104 ..      16     104 .. 0.93

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 2.9e-23
                 HHHHHHHHHHHHHHHTTS.SSS----SSSS-STTHHHHHHTTTSSHHHHTT..CHHHHHHHHHTS-..-.......HHHHHHHHHHHHHHHH CS
        ARID   1 ekeeFlstLkqfhenrgt.lkkiPviggkevdlykLyraVikrGGfrkvtqk.nkWeevaqklglpredpeasesvaqalksiYeryLlpyE 90 
                 e+e+F+++++ +h++rgt +++ P++ g+++ l++Ly+aV   GG+++v+++  +W+e+a+ +gl +++   +  +a +lk++Y++yL++yE
  KKY16027.1  16 ENERFIDDVAAYHKQRGTgFDREPKVSGRPIHLLNLYKAVLALGGYDAVSAErMQWRELAKSFGLGTHH---EAAMAFQLKTVYYKYLAAYE 104
                 5799**************99999***************************85489**********8655...44899**************9 PP

>> RFX_DNA_binding  RFX DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.2         4   1.8e+04      23      34 ..      93     104 ..      84     107 .. 0.78
   2 ?   13.0   0.0   2.6e-05      0.12       6      59 ..     620     671 ..     617     689 .. 0.88
   3 ?    0.1   0.0      0.28   1.3e+03      42      64 ..     877     900 ..     860     913 .. 0.81

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 4
  RFX_DNA_binding  23 qevYaeYlsics 34 
                      ++vY +Yl++++
       KKY16027.1  93 KTVYYKYLAAYE 104
                      689999998876 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.6e-05
  RFX_DNA_binding   6 qwlnanfeeaedvsvprqevYaeYlsicsklklkplnaasFgKlirsvFpnvkt 59 
                       wl++ fee+ ++ + +  +++ Y++  s++  +pl a++F K + s F++ ++
       KKY16027.1 620 YWLRSCFEEDLESDITQIAIWQAYQAQFSQH--TPLAASEFIKNVSSTFSTAQA 671
                      5************************998765..8***************98776 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.28
  RFX_DNA_binding  42 naasFgKlirsvFpnvktrRLg.t 64 
                      n+ sF  ++ + Fp+    RLg +
       KKY16027.1 877 NKRSFIAIMEKTFPKSIKERLGwV 900
                      7889999**************954 PP

>> BssB_TutG  Benzylsuccinate synthase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   6.8e-06     0.031      12      46 ..     701     737 ..     696     753 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.8e-06
   BssB_TutG  12 rkCkWqia..DPtdPsrGqCtvnrtkmGgvWkrlvrD 46 
                 +kC W+i+  DPt+P   qC + + +  g+W  +++ 
  KKY16027.1 701 QKCLWEIPsiDPTQPGTRQCSTYHLNRQGLWNHILNS 737
                 79*****777*********************998875 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   4.5e-06      0.02     153     227 ..     475     552 ..     454     673 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.5e-06
                 HHHHHHHCTT-SSHHHHHHHHHHHHHH....HCCCCCCCHHHHHHHCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH CS
   Adaptin_N 153 lveeikellsdkdpgvvlaAvalleei....kkndrlllkllpklvrrLcnllteldpwlqvkiiklltrlarqepeer 227
                 l + + + ++++d g vl+A+++ + i     + ++l + l   lv r+c+l+t +d+  q++ +k+l++++ +++ + 
  KKY16027.1 475 LYQSLLKYIESNDRGAVLSALKAVDYIsgdlPYAHKL-VGLSANLVDRICQLTTLPDEEVQIRALKILYQYTSHPENLL 552
                 577788888******************6654444444.5999******************************9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (942 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.50
# Mc/sec: 5664.90
//
Query:       KKY16028.1  [L=520]
Description: putative alanine aminotransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-35  122.8   0.0    2.4e-35  122.4   0.0    1.1  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   0.0   1.4e-39   2.4e-35      26     352 ..     138     502 ..     120     507 .. 0.88

  Alignments for each domain:
  == domain 1  score: 122.4 bits;  conditional E-value: 1.4e-39
                    HHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEE CS
  Aminotran_1_2  26 aekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryp 121
                    ++k  +++ +++  y+ + g p+ ++ +akf+ ++ + + +++ ++ +  Ga+++ ++l  +++  p++ +l+p p y+ y+  l +  +  v+y 
     KKY16028.1 138 RAKWLLHEVQSVGAYSQSAGVPAIRQSVAKFIEKRDGFSADPS-SIYLAAGASSAVNTLLHIICSKPETGVLIPIPQYPLYTASLAILNARAVPYY 232
                    444467888999*******************************.**************************************************** PP

                    BEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSS..HTHHHHGGSTTSTT... CS
  Aminotran_1_2 122 lyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsl..davatranveeepn... 212
                    l++ + ++ d++a+ e  ++a  +   ++ i+v +p NPtG+ +t ee+++++++a   +l+++ De+Y++ vf  +  ++ + +++++e+     
     KKY16028.1 233 LEEHKAWGTDIDAIRESCTKARLEGTDVRAIAVINPGNPTGASLTAEEVTEIIKFAADEKLVIIADEVYQTNVFIGTfhSFKKCLSELKEAEPgky 328
                    ************************************************************************998766677666555555555566 PP

                    ....EEEEEESSSTT.SSGGG-EEE..EEE.EHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH........HHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 213 ....llivgslsKaf.GlaGeRvGy..ilg.naavvsqlrklsrpflsssllqaavaaalsdallkqs........eleemrqrlqkrrkelrdeL 292
                        l+ ++s sK   G  G R Gy  ++g +++v +q+ k+ + +l + +  + +++++ +++   +        e e+  + l++r+  l++++
     KKY16028.1 329 dtveLASLNSISKGVvGECGHRGGYfeLVGfDKEVQDQILKFISIVLCPPVIGQCLVEMMTNPPVGGDpsyplyheEYEAIEEGLHQRALALYKAF 424
                    7788*********988*********54466788***************7777778888888877777789999999******************** PP

                    HHS.TEEEECCSCSSEEEEEETHH.....CHHHHHHH............HHHTCTEEEEEGGGGTS...TTEEEEEC.TTS- CS
  Aminotran_1_2 293 ael.glkvlasqsgmflltdlsae.....takelskk............Lleevgvyvtpgtsftv...pgrlRitv.Aglt 352
                    ++  g+++ ++q+ m+l+  ++       +    +k+            Ll+  g+ v+pg+ f+    + ++R t+ A +t
     KKY16028.1 425 KQMeGVEIGEPQGSMYLFPTINLPpkaieA----AKSagkqaddyysmrLLDATGICVVPGSGFGQkegTLHFRTTFlAPGT 502
                    999************999887766646662....333444466777778****************98766689999977666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3484.69
//
Query:       KKY16037.1  [L=310]
Description: putative 2og-fe oxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-25   88.4   0.0    6.9e-25   87.5   0.0    1.5  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
    0.00093   19.9   0.0     0.0017   19.1   0.0    1.4  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
  ------ inclusion threshold ------
      0.022   14.7   0.0      0.042   13.8   0.0    1.4  1  GRIP          GRIP domain


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.0   1.1e-28   6.9e-25       4      99 ..     120     218 ..     117     220 .. 0.88

  Alignments for each domain:
  == domain 1  score: 87.5 bits;  conditional E-value: 1.1e-28
                   EEEEEEE-S-.-----.---EEEEEESSSEEEEEEE-TT---EEEE.TE.EEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTGSEEEEE CS
  2OG-FeII_Oxy   4 llvlnyypph.pdpev.ilglgahtdaslltillqddvgglevfkd.gk.wlrvppvdnslivniGdallflsngryksvlHrVlpvnegerRvsia 96 
                   +l+l +ypp+ pd +  + g+gahtd + +tillqddvggl+v+++  + w++v+p +++l+vn Gd +  ++n  y s+ HrV + + +e R+si 
    KKY16037.1 120 VLRLLHYPPQaPDADEnERGIGAHTDFGGITILLQDDVGGLQVYDEpTStWIDVKPTPGALVVNLGDLMARWTNDVYVSNVHRVINKTGQE-RYSIP 215
                   6778888**9866665699************************9886446**********************************9555555.***** PP

                   EEE CS
  2OG-FeII_Oxy  97 yfi 99 
                   +f+
    KKY16037.1 216 FFF 218
                   **8 PP

>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.9e-07    0.0017      66     117 ..      15      69 ..      10      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.9e-07
      DIOX_N  66 akspsfrGysrlgeektdgkkldwkesfdlgtelpeddp...agkplegpnqwPe 117
                  k+p+  Gy+++ ++k++g+ +d ke++++g+ lped++   +++  +g+n+ P+
  KKY16037.1  15 PKNPNRLGYEGFRSQKFEGSSGDFKEGLFIGRVLPEDHRyiqEKRLQCGHNVYPD 69 
                 578899********************************98855555788888886 PP

>> GRIP  GRIP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   7.1e-06     0.042       8      37 ..      78     106 ..      77     108 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.1e-06
        GRIP   8 KNVllqFLeskeaserkqLvpVlstlLkfs 37 
                 KNV+ ++ e+ + s+++ +++V+++ L+++
  KKY16037.1  78 KNVVTRYHEALS-SVAQDILKVIAQTLHLD 106
                 9***********.****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2452.38
//
Query:       KKY16038.1  [L=388]
Description: putative aldehyde dehydrogenase (nad+) [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.9e-128  428.9   0.1   2.1e-128  428.7   0.1    1.0  1  Aldedh    Aldehyde dehydrogenase family
     0.0019   17.7   0.0       0.92    8.9   0.0    2.2  2  DUF1487   Protein of unknown function (DUF1487)
  ------ inclusion threshold ------
       0.19   11.3   0.0        0.3   10.7   0.0    1.2  1  SMRP1     Spermatid-specific manchette-related protein 1


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  428.7   0.1  3.6e-132  2.1e-128      79     462 .]       3     381 ..       1     381 [. 0.96

  Alignments for each domain:
  == domain 1  score: 428.7 bits;  conditional E-value: 3.6e-132
                 H---HHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHH CS
      Aldedh  79 tGkplaearaeveeaidvlryyaelaeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfe 177
                 +Gkp+++   + + a++ +ry+ e+a     ++l + +g+ +l  r+P+Gv ++I+PWN  l+ +a k+apalaaG+t+vlK +e++pl++l++a l+e
  KKY16038.1   3 MGKPISS-FVDAQAAVKRFRYFSEAAYPQGNTSLHT-PGYANLLLRQPIGVAASIIPWNARLIFLANKAAPALAAGCTMVLKSSEKAPLTSLKVASLIE 99 
                 7888864.5688999*******99998866666655.8************************************************************* PP

                 HTTS-TTSEEE--SSTCCHHHHHHH-TTESEEEEES-HHHHHHHHHH.HHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEE CS
      Aldedh 178 eaglPkgvlnvvtgsgsevgealvehpevdkvsftGstevgrkiaka.aaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrl 275
                 +ag+P+gv+n+++g+g  +g+al++h +v++vsftGs ++gr i+ka a++n+k+v+lElGGk+p++++edaDldka++++  ++++ +GQ+C+a sr+
  KKY16038.1 100 KAGFPPGVMNIISGNGPVCGNALASHMDVRVVSFTGSLRTGRAIQKAaADSNMKNVVLELGGKSPVLIFEDADLDKAAKQTHLSIMFMSGQTCMANSRI 198
                 ***********************************************666************************************************* PP

                 EEEHHHHHHHHHHHHHHHHT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSE CS
      Aldedh 276 lvqesiydefveklveaakklkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPV 374
                 +vq+si++ef++k++e+  +  +gdpl+++t  G ++++ q+e++ ky+e +k+ g kl  Gg   e+++  + f++Pt++ + ++d+++++eEiFGPV
  KKY16038.1 199 YVQKSIANEFIAKFKETSDSTGMGDPLEKTTFQGLQVDKMQFETILKYTEAGKKTG-KLASGG---EKSELGNIFIKPTIFLDQPEDSQVMKEEIFGPV 293
                 ******************************************************88.******...5667778************************** PP

                 EEEEEESSHHHHHHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 375 lsvikfkdeeeaieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 + + +f++e+e+ ++aNdt++GL a+v+tkdl+ra+r++++le G+v+iN+++  +a  +pfgG+k Sg+Gre    ++++y+e+ktv
  KKY16038.1 294 VIINTFETEDEVTRKANDTDFGLYAAVYTKDLDRAMRLSKALESGTVGINCTSPMTAADMPFGGYKSSGIGREDLIRSMDHYLEMKTV 381
                 ****************************************************99888888**************************98 PP

>> DUF1487  Protein of unknown function (DUF1487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00015      0.92       9      55 ..     166     214 ..     162     256 .. 0.83
   2 !    6.7   0.0   0.00075       4.5     116     170 ..     293     346 ..     270     354 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00015
     DUF1487   9 vifedgDlnsalealveslk..ePfaegavatvlveesirdefvervrs 55 
                 +ifed+Dl++a+++   s+       + a   + v++si++ef+ + ++
  KKY16038.1 166 LIFEDADLDKAAKQTHLSIMfmSGQTCMANSRIYVQKSIANEFIAKFKE 214
                 69*********987655554014445555567************98775 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00075
     DUF1487 116 vvTlhtFrnakEvvkllakeslkfasvsvwneklaavyelvarlnvdvftiNCak 170
                 vv + tF +  Ev++ ++     +   +v+ + l  +  l ++l++ ++ iNC++
  KKY16038.1 293 VVIINTFETEDEVTRKANDTDFGL-YAAVYTKDLDRAMRLSKALESGTVGINCTS 346
                 8899*********98655444433.347899**********************97 PP

>> SMRP1  Spermatid-specific manchette-related protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0     5e-05       0.3     180     215 ..     340     376 ..     320     382 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5e-05
       SMRP1 180 prcgcleplp.grlpfqgyesacsgrhyclrgmdyct 215
                   + c +p+    +pf gy+s+  gr   +r md++ 
  KKY16038.1 340 VGINCTSPMTaADMPFGGYKSSGIGREDLIRSMDHYL 376
                 45678888762579********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2517.11
//
Query:       KKY16039.1  [L=134]
Description: hypothetical protein UCRPC4_g06020 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.03   14.2   0.5      0.041   13.7   0.5    1.2  1  PSI_PsaF      Photosystem I reaction centre subunit III
        0.1   12.7   3.5       0.14   12.2   1.0    2.2  2  EKAL          EMP3-KAHRP-like N-terminal domain
       0.22   11.1   1.0       0.29   10.7   1.0    1.2  1  TRAP-gamma    Translocon-associated protein, gamma subunit (T
        1.8    8.1  10.4        2.1    7.8  10.4    1.1  1  Exonuc_VII_L  Exonuclease VII, large subunit
        6.2    4.6   9.1        6.1    4.6   9.1    1.0  1  V_ATPase_I    V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> PSI_PsaF  Photosystem I reaction centre subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.5   1.1e-05     0.041       8      87 ..      37     113 ..      34     128 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
    PSI_PsaF   8 alslaaasaavadiagltpCseskafakrlkkevkklekrlkkyeadsaPalalkakiektkkrfekyskagllCGedGl 87 
                 +l+++a ++ + +    ++C e +a  ++ k+++ +l++  ++     a    ++++ +  ++rf++y ++ ll  ++ l
  KKY16039.1  37 GLNTSAKTHKALNYQQWQKCRELHALIQNSKETLGELQQEHDR---TEAGLREIEEQYNSKQRRFKEYDEKILLKRKEHL 113
                 556666666666677889**************99999987655...55667789****************9999888766 PP

>> EKAL  EMP3-KAHRP-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.0     4e-05      0.14       5      25 ..      80     100 ..      77     104 .. 0.91
   2 ?    3.7   0.8     0.018        65       9      36 ..      98     128 ..      96     133 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4e-05
        EKAL   5 tpgGlKeYeEnYEsKhfklkE 25 
                 t++Gl+e eE+Y+sK+ ++kE
  KKY16039.1  80 TEAGLREIEEQYNSKQRRFKE 100
                 789****************99 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.018
        EKAL   9 lKeYeEnYEsK...hfklkEsvdngkkdCDE 36 
                 +KeY+E+   K   h k  E+  +++k  +E
  KKY16039.1  98 FKEYDEKILLKrkeHLKAVENARQKRKRAEE 128
                 8*****9866622356777777777776655 PP

>> TRAP-gamma  Translocon-associated protein, gamma subunit (TRAP-gamma)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.0     8e-05      0.29      77     114 ..      75     111 ..      56     120 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8e-05
  TRAP-gamma  77 iavkReeavtrevnkkladdkKiskkekderilwkkne 114
                     R+ea  re+++++ ++k+ + ke de+il k++e
  KKY16039.1  75 QEHDRTEAGLREIEEQY-NSKQRRFKEYDEKILLKRKE 111
                 4568*********9999.7788899*******999887 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  10.4   0.00058       2.1     149     250 ..      33     127 ..       2     133 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00058
  Exonuc_VII_L 149 leelerrlekaikrll.eekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerl.kekleekkerlkklkerlelle 243
                    ++l  +++ +++++l  ++ q+ ++l+  +++++e l + +q+ d++e+ l++ +++q+++k++r++e+ e++      ++ke+lk+++    +++
    KKY16039.1  33 RNRLGLNTSAKTHKALnYQQWQKCRELHALIQNSKETLGELQQEHDRTEAGLRE-IEEQYNSKQRRFKEYDEKIlL----KRKEHLKAVE----NAR 120
                   233333333333344423444677777767777788888888888888888887.888888888888888866633....2333333331....222 PP

  Exonuc_VII_L 244 ekkerle 250
                   +k++r+e
    KKY16039.1 121 QKRKRAE 127
                   3333332 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   9.1    0.0017       6.1      29     128 ..       5     126 ..       1     134 [] 0.53

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0017
  V_ATPase_I  29 vrrcdemerklrfleeeieklekavikeeea.......................eesleapeekeldeleeelekleeelkelnenleklkkelnelve 104
                 v  +++ e  l+++++  +  ++a ++e++                         + l ++++++l el++e +++e+ l+e++e++++ +++++e  e
  KKY16039.1   5 VEEIENAEDPLDVISQRFSISDSAFQRERNRlglntsakthkalnyqqwqkcreLHALIQNSKETLGELQQEHDRTEAGLREIEEQYNSKQRRFKEYDE 103
                 555666666666666666665555555444456666666544444444444444666667777777777777777777777777777777777777766 PP

  V_ATPase_I 105 lkavlekakefleee.eeeeeeees 128
                 +  +    ke l++  +++++++++
  KKY16039.1 104 KILLK--RKEHLKAVeNARQKRKRA 126
                 54333..333333221112211111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1819  (0.101456); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 880.09
//
Query:       KKY16040.1  [L=687]
Description: putative pol-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.1e-08   32.3   0.0    2.1e-07   30.8   0.0    1.8  1  DUF4939         Domain of unknown function (DUF4939)
      9e-05   22.1   0.0    0.00021   20.9   0.0    1.6  2  RVT_1           Reverse transcriptase (RNA-dependent DNA poly
     0.0068   16.7   0.0      0.018   15.3   0.0    1.7  1  Retrotrans_gag  Retrotransposon gag protein


Domain annotation for each model (and alignments):
>> DUF4939  Domain of unknown function (DUF4939)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   3.5e-11   2.1e-07      15     104 ..     109     197 ..      96     202 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 3.5e-11
     DUF4939  15 rlrqkrrwrnpipfpetfdGdtdrlpefivqtlsymlvdektfssdalkvtflitrltGealewvlpyikkdspllndyraflaemkrvf 104
                 +l + ++ +  +p p  f+Gd ++l  fi   l  +  + ++f +d  ++ + i+rl+G a + +   i  +   ln+ + f+a++k ++
  KKY16040.1 109 LL-KSKHKSEKLPDPPVFNGDPEKLRPFIGALLLKVRGNADHFPTDESQLCYAISRLEGSAYKSMQSIITPEGIALNNVNEFVAKLKMIY 197
                 44.566778899**************************************************************************9876 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       1.2   7.3e+03     178     204 ..      91     117 ..      86     119 .. 0.82
   2 !   20.9   0.0   3.5e-08   0.00021       2      54 ..     614     673 ..     613     684 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHHHTT--BEGGG-E CS
       RVT_1 178 eelqelleaveewlkesglkinpeKtk 204
                 +elq+  ++v+++l+e +l  +++K++
  KKY16040.1  91 QELQARGDDVVNTLREINLLKSKHKSE 117
                 568888899999999999999999987 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 3.5e-08
                 E-TT.......S-EEE......-THHHHCTB--..........-------HHHH...... CS
       RVT_1   2 pKkg......pgsyRpisllsvdykalnkliakrLkdvl.ekllsenqpgfrpgrstlda 54 
                 pK+g       + yRpi ll++++ka++++ia rL+ +  +  l+++  g r+ r t+d 
  KKY16040.1 614 PKPGksdytsIKAYRPIVLLNTLGKAMESVIATRLSYHGeNGALPNQVIGGRKLRATEDV 673
                 777778899999***************************8889999999*****999884 PP

>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     3e-06     0.018       3      88 ..     160     247 ..     158     254 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3e-06
  Retrotrans_gag   3 astslegaAkswlkslvarsidasesWkdlkkaflktflpserkdqleeelsslrQgtesvreYvtrfktladqlde..vlteeakie 88 
                     a + leg A + ++s+ + +  a ++ +++ ++++  +  ++++    ++l  lrQ+++++ +++ +f+++++++++   + +e ki+
      KKY16040.1 160 AISRLEGSAYKSMQSIITPEGIALNNVNEFVAKLKMIYKGPDYRVMILQKLDALRQKNRTFVDFFCEFEEYLNEANQegTWVDEVKIN 247
                     567889999999999988888889999************99999999999*************************9888777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 4420.16
//
Query:       KKY16041.1  [L=305]
Description: putative homocitrate synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-47  161.5   0.3    3.6e-47  161.1   0.3    1.2  1  HMGL-like     HMGL-like
  ------ inclusion threshold ------
      0.057   12.9   0.0        0.1   12.1   0.0    1.4  1  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.1   0.3     4e-51   3.6e-47      75     262 ..       1     185 [.       1     187 [. 0.95

  Alignments for each domain:
  == domain 1  score: 161.1 bits;  conditional E-value: 4e-51
                 HHHHHHHHH....TT-SEEEEEEES-HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-ETTT-BTTTBS--HHHHHHHHHHHHHHT-SEEEEEETTS--- CS
   HMGL-like  75 ekdikaavealkgagakrvhvfiatselhlkaklkkdreevakkaeeavkaarslgkdvelsledasrtdleflaevveaaeeaGatriniaDtvGvlt 173
                 ++d k+a+e    +g++ +++fi ts   ++++++kd++++ + ++e++++++s+g++v++s ed+ r+ l+++  ++  ++++G+ r+ i+DtvG+++
  KKY16041.1   1 MDDAKVAIE----TGVDGINIFIGTSSYLRNYSHGKDIHQIEEAVVEVIEYIKSKGIEVRFSTEDSFRSRLQDIEHLYSIVDKIGVARVGISDTVGIAS 95 
                 5899*****....************************************************************************************** PP

                 HHHHHHHHHHHHHHS-.GGGEEEEEB-TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT...-B----HHHHHHHHH CS
   HMGL-like 174 PneaaelisalkervkdkvilsvHcHndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealg...vdtgldlqklrsiaa 262
                 P +++ l++ +++ v   ++++vH Hnd+G+A+an++ A+eaGa++vd++v+G+Ger+G ++l  l+a l +++   +    +++klr+++ 
  KKY16041.1  96 PCQVYYLVKSVRSLVA--CDIEVHLHNDTGCAIANAYSALEAGATHVDTSVLGIGERNGITSLGGLIARLIVTQrrnIVNRFKIKKLRELEV 185
                 ****************..**************************************************999888666777777777777765 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.1e-05       0.1      76     158 ..       4      87 ..       1      88 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.1e-05
                   HHHHHHHTBSEEEEEBCCGBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTC.HHHHHHHHHHTTTTEEE CS
  AP_endonuc_2  76 ielaaaLGapllvlhpGtagagpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgd.eelarlldavdspnvgv 158
                   ++ a + G++ +++++Gt +++ + s   ++ ++ e++ e+++y + +g+++ + t +++ + l d e+l  ++d+++  +vg+
    KKY16041.1   4 AKVAIETGVDGINIFIGTSSYLRNYSHGKDIHQIEEAVVEVIEYIKSKGIEVRFSTEDSFRSRLQDiEHLYSIVDKIGVARVGI 87 
                   5778899**********9989999999999999999999999999999988888888888876666799999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2050.79
//
Query:       KKY16042.1  [L=1051]
Description: putative abc multidrug transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-49  167.2   0.0    2.5e-27   96.0   0.0    2.4  2  ABC_tran       ABC transporter
    5.7e-32  111.5  19.4    2.3e-29  102.9  10.3    2.2  2  ABC_membrane   ABC transporter transmembrane region
    7.3e-11   42.4   0.4      0.012   15.4   0.2    4.1  4  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    5.2e-10   39.1   0.7     0.0034   16.9   0.0    4.4  4  SMC_N          RecF/RecN/SMC N terminal domain
    3.9e-08   32.9   0.4     0.0016   18.2   0.0    2.6  2  AAA_29         P-loop containing region of AAA domain
    1.1e-05   25.8   0.1       0.21   12.0   0.0    3.6  2  AAA            ATPase family associated with various cellular
      4e-05   23.6   0.3        0.2   11.5   0.1    2.4  2  RsgA_GTPase    RsgA GTPase
    5.7e-05   23.6   0.1       0.15   12.4   0.0    2.7  2  AAA_16         AAA ATPase domain
    6.2e-05   23.6   0.3      0.083   13.4   0.0    2.4  2  AAA_23         AAA domain
    7.1e-05   23.1   0.6       0.34   11.2   0.0    3.1  2  AAA_22         AAA domain
    0.00031   20.8   0.2       0.26   11.4   0.1    2.8  2  MMR_HSR1       50S ribosome-binding GTPase
    0.00036   20.3   0.1      0.097   12.4   0.1    2.2  2  AAA_15         AAA ATPase domain
    0.00094   18.7   0.0       0.56    9.7   0.0    2.4  2  AAA_7          P-loop containing dynein motor region
     0.0011   19.2   0.2          1    9.6   0.1    2.7  2  SbcCD_C        Putative exonuclease SbcCD, C subunit
     0.0012   19.1   0.7       0.19   11.9   0.0    3.0  2  AAA_33         AAA domain
     0.0025   16.9   0.2      0.071   12.1   0.1    2.4  2  T2SSE          Type II/IV secretion system protein
     0.0084   16.2   0.1        1.2    9.2   0.0    2.4  2  Dynamin_N      Dynamin family
  ------ inclusion threshold ------
      0.012   15.8   0.1         14    6.0   0.0    3.8  4  Roc            Ras of Complex, Roc, domain of DAPkinase
       0.02   15.5   0.0        5.9    7.5   0.0    2.8  2  AAA_18         AAA domain
      0.031   14.0   0.2       0.35   10.6   0.0    2.5  2  PduV-EutP      Ethanolamine utilisation - propanediol utilisa
      0.032   14.1   0.7       0.59   10.0   0.1    2.8  2  ATPase_2       ATPase domain predominantly from Archaea
      0.036   13.2   0.1        5.5    6.1   0.0    2.4  2  DUF815         Protein of unknown function (DUF815)
      0.039   14.0   0.0       0.47   10.5   0.0    2.8  3  AAA_14         AAA domain
       0.04   13.2   0.0        2.1    7.6   0.0    2.4  2  Zeta_toxin     Zeta toxin
      0.042   13.6   0.3        1.5    8.5   0.0    2.6  2  AAA_24         AAA domain
      0.045   13.5   0.1        6.9    6.3   0.0    2.8  2  AAA_30         AAA domain
      0.058   12.3   0.0       0.35    9.7   0.0    2.0  2  AAA_PrkA       PrkA AAA domain
      0.072   12.7   0.6         21    4.6   0.0    3.2  3  AAA_25         AAA domain
       0.11   12.2   0.3       0.79    9.4   0.1    2.4  3  Guanylate_kin  Guanylate kinase
       0.15   11.7   0.9        5.4    6.6   0.2    2.4  2  cobW           CobW/HypB/UreG, nucleotide-binding domain
       0.44    9.3   4.4       0.43    9.3   0.1    2.8  3  ABC_ATPase     Predicted ATPase of the ABC class


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.0   1.1e-21   6.2e-19       1     135 [.     274     408 ..     274     410 .. 0.86
   2 !   96.0   0.0   4.4e-30   2.5e-27       1     137 []     825     968 ..     825     968 .. 0.91

  Alignments for each domain:
  == domain 1  score: 68.9 bits;  conditional E-value: 1.1e-21
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...............HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...............esdee 84 
                 l++++l++++++++ ++G+  +GKStLlk+++ ++  t+G i             ++ k i+++ q+p l++++ ++ n               +    
  KKY16042.1 274 LQDINLTIEKSKITLLIGPVASGKSTLLKAVLAETPLTKGFI------------YVSTKAIAFCDQTPWLKNDT-IEANirgfsdfdvewynavKNACG 359
                 789***************************************............58899**************9.999999*99655554333333333 PP

                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEp 135
                 +e+ ++++   +  +tv++s++ sLSgGq+qrva+ara+ +k++++llD+ 
  KKY16042.1 360 LEEDIATFPSGD--QTVIGSNGVSLSGGQRQRVAIARAVYSKKRIILLDDV 408
                 666666666655..9**********************************85 PP

  == domain 2  score: 96.0 bits;  conditional E-value: 4.4e-30
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHHST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsklg 93 
                 l+++sl +k+gek++i G++G+GKS+L+ +l ++ ++t+G+i +dg dl++ + +  r ++  +pq+p +  ++ v+ n      + + e+ +alsk+g
  KKY16042.1 825 LHEISLVIKPGEKIGICGRSGSGKSSLILALFRMIEWTSGTIVVDGLDLSNVPQQDIRLRLNAVPQDPYFIVGT-VHLNldpyqtTTEIEAIHALSKVG 922
                 6899***************************************************************8888888.888889987777777999****** PP

                 TGGTTCBGESTTS..GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  94 lkelkdtvvkssp..ssLSgGqkqrvalarallkkpkllllDEpta 137
                 l ++  t ++ ++  ++LS+Gq+q  +lara+l+k k+++lDE+t+
  KKY16042.1 923 LWQTCITSLDVEMkpNELSYGQRQLFCLARAILRKGKIVVLDEATS 968
                 ***666665555455*****************************96 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   1.7   5.4e-05     0.031     100     274 .]      13     188 ..       7     188 .. 0.78
   2 !  102.9  10.3     4e-32   2.3e-29      18     247 ..     507     734 ..     500     762 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.4e-05
                   HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHT CS
  ABC_membrane 100 llsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkaf 196
                    +++++ dv+k+ +g+ + + l+   +++ ++++++   lg   +  +++ l++  +v+ + +    + ++k +k+++ + +v+  +ls ++  k  
    KKY16042.1  13 AMTLMSADVEKIVQGFRNLHELWANLISVGIATYLLEQELGAACAAPVIVALICGGIVFGLSG-SAARRQQKWMKSIEARVKVTSAMLSSMKGTKMA 108
                   689********************************9999999876666655555555555555.5556788999*********************** PP

                   TTHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 197 greeyflekfekaleeakka..gikkaianglligit.qllgllsyalalwfGttlvisgelsvgdlvvflslfailfgal 274
                   g  ++  e +++ +  +++a  +++ ++++ l i++t q l+ ++++ ++++ ++     +l+ +++++ lslf++l+++l
    KKY16042.1 109 GLSDKLAEIIQEFRIHELHAakQFRQLLVYTLAISFTpQNLVPVVTFSIFVI-ISRTNGTKLDTDKMFTSLSLFSLLTTPL 188
                   ************9988877611455555555555555355555555555333.33333449****************9986 PP

  == domain 2  score: 102.9 bits;  conditional E-value: 4e-32
                   HHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  18 fplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvsklrdg 114
                   ++++l+ + d   +++d++    +++ ++++l++ ++++l+l+    ++v+g+++ ++l+++++  + ++p++ f+t ++G ll+r+t d+  ++d+
    KKY16042.1 507 QAVWLKWWGDASDTHQDADN--GKYLGVYWALAVMGVSFLGLMVREAFMVMGINAGVKLHQRILSTVTSAPIALFSTVDTGILLNRFTQDIGIVDDS 601
                   66777777777777666666..99999999999999999999999999************************************************* PP

                   HCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHH CS
  ABC_membrane 115 lgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfekale 211
                   l++ ++ f  s++++vg+ +++ +   +++l+  +il+l++++++++ +++++l+  + +a +++++   Esl g+ t++afg+++++++   + ++
    KKY16042.1 602 LPMAILNFAASFFSCVGTTVLISTATAYVALCYPVILILLYFIQKFYLRTSRQLRVMDIEAKSPLYTQYLESLAGLPTIRAFGWQHFEQDINFELVN 698
                   ************************************************************************************************* PP

                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 212 eakkagikkaianglligitqllgllsyalalwfGt 247
                   + ++  + ++ ++++l  +++l++  ++++++ +++
    KKY16042.1 699 TSQQPFYLMLMVQRWLTLVLELISVGLILIITGLAV 734
                   **************************9999964333 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   2.1e-05     0.012       1      19 [.     286     304 ..     286     342 .. 0.91
   2 ?    1.3   0.0      0.42   2.4e+02     238     300 ..     383     446 ..     380     448 .. 0.67
   3 !    8.6   0.1    0.0024       1.4       3      22 ..     839     858 ..     838     894 .. 0.80
   4 !   10.8   0.0   0.00053      0.31     228     286 ..     931     990 ..     925    1001 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.1e-05
      AAA_21   1 lnvliGpNgsGKSnLLdal 19 
                 +++liGp +sGKS+LL+a 
  KKY16042.1 286 ITLLIGPVASGKSTLLKAV 304
                 79***************98 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.42
      AAA_21 238 SdGtkrllalltallralkkgsllliDEpEngLHPkllrrll.ell...kelsrngaQviltTHSpl 300
                 S G+++  a++ a+++     +++l+D++ +g++    + +  +ll    +l++ g+ v+++TH   
  KKY16042.1 383 SGGQRQRVAIARAVYSKK---RIILLDDVFSGMDSNTAHMVStRLLgaqGILRSAGVTVVVATHTVN 446
                 666666655555566544...**************666555533335556666679********655 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0024
      AAA_21   3 vliGpNgsGKSnLLdaldll 22 
                 ++ G+ gsGKS+L+ al  +
  KKY16042.1 839 GICGRSGSGKSSLILALFRM 858
                 689**************544 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.00053
      AAA_21 228 dgqelparelSdGtkrllalltallralkkgsllliDEpEngLHP...kllrrll.ellkels 286
                  + e  ++elS G+++l++l+ a+lr     +++++DE  ++ +    +l+ rl+ e +k+++
  KKY16042.1 931 LDVEMKPNELSYGQRQLFCLARAILRKG---KIVVLDEATSSVDRktdALMQRLIrEEFKNHT 990
                 57788899*****************977...9******9999988777444444436666665 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.028        16      24      44 ..     284     304 ..     274     312 .. 0.85
   2 ?    5.6   0.0     0.016       9.4     136     209 ..     381     455 ..     316     464 .. 0.75
   3 !    6.5   0.0    0.0084       4.8      28      47 ..     839     857 ..     822     866 .. 0.83
   4 !   16.9   0.0   5.8e-06    0.0034     130     210 ..     933    1009 ..     882    1016 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.028
                 SSEEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAi 44 
                 +++t ++Gp  SGKs ll A+
  KKY16042.1 284 SKITLLIGPVASGKSTLLKAV 304
                 5699***************98 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.016
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH.....HHCTTSEEEEE-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk.....eksknaQfivislreemlekadklv 209
                 +LSgG+++ va+a       ++++ + llD++ + +D +  + v+++l       +s  + ++v +++ ++l  ad+++
  KKY16042.1 381 SLSGGQRQRVAIAR----AVYSKKRIILLDDVFSGMDSNTAHMVSTRLLgaqgiLRSAGVTVVVATHTVNLLPLADHII 455
                 79*****9988764....457777899************9999998875222222344566777777777777776666 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0084
                 EEEESTTSSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAilFv 47 
                  i G+ GSGKs+l+ A+ F 
  KKY16042.1 839 GICGRSGSGKSSLILAL-FR 857
                 699***********998.65 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 5.8e-06
                  TT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  130 agiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvg 210 
                  +++++++LS G+++L  la   A    ++  +++lDe  +  D k  + + +l++e+ kn  +i +++r +++ + d+lv 
  KKY16042.1  933 VEMKPNELSYGQRQLFCLAR--A--ILRKGKIVVLDEATSSVDRKTDALMQRLIREEFKNHTIIAVAHRLDTILDFDRLVV 1009
                  5678889********88764..3..4567779***************************************9999999875 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.7e-06    0.0016      17      43 ..     279     305 ..     272     307 .. 0.83
   2 !   12.0   0.1   0.00023      0.13      19      42 ..     832     855 ..     824     859 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.7e-06
      AAA_29  17 ieidlkgatlltGpsGsGKSTllDAiq 43 
                 ++i+ + +tll+Gp  sGKSTll A+ 
  KKY16042.1 279 LTIEKSKITLLIGPVASGKSTLLKAVL 305
                 56776679***************9875 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00023
      AAA_29  19 idlkgatlltGpsGsGKSTllDAi 42 
                 i++ + + + G+sGsGKS+l+ A+
  KKY16042.1 832 IKPGEKIGICGRSGSGKSSLILAL 855
                 555567789***********9665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00036      0.21       2     116 ..     288     449 ..     287     455 .. 0.75
   2 !    8.4   0.1    0.0047       2.7       4     115 ..     841    1001 ..     838    1007 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00036
                 EEESSTTSSHHHHHHHHHHHH....THEEEEEETTTCSSS....................................................STTHHHH CS
         AAA   2 llyGppGtGKTllakavakel....gvefleisgsellsk....................................................yvgesek 44 
                 ll+Gp   GK++l kav  e+    g+ ++++++  ++++                                                    +   + +
  KKY16042.1 288 LLIGPVASGKSTLLKAVLAETpltkGFIYVSTKAIAFCDQtpwlkndtieanirgfsdfdvewynavknacgleediatfpsgdqtvigsngVSLSGGQ 386
                 89******************7554445567777777776678888888888888888899999999999999999999999999998888764445555 PP

                 HHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGST CS
         AAA  45 kirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkld 116
                 + r  +++a  ++ + i+++D++ + + s+       +  v   Ll +   +++  + v+v++at++++ l+
  KKY16042.1 387 RQRVAIARAVYSK-KRIILLDDVFSGMDSN------TAHMVSTRLLGAQGILRS--AGVTVVVATHTVNLLP 449
                 5555555554443.6899999998888888......666666777766666666..4588888888887765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0047
                  ESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSS...........................................................ST CS
         AAA    4 yGppGtGKTllakavakelg..vefleisgsellsk...........................................................yv 39  
                  +G  G GK++l+ a+ + ++  +  + ++g +l +                                                              
  KKY16042.1  841 CGRSGSGKSSLILALFRMIEwtSGTIVVDGLDLSNVpqqdirlrlnavpqdpyfivgtvhlnldpyqttteieaihalskvglwqtcitsldvemKP 937 
                  6777888888888888886522334555555555445555555555555555555555555555666666666666666677777777777776667 PP

                  THHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGS CS
         AAA   40 gesekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkl 115 
                   e +   r+lf  a++   k +i+++DE+ + + ++            ++L++ l +++ k+   ++i++++r d++
  KKY16042.1  938 NELSYGQRQLFCLARAILrKGKIVVLDEATSSVDRK-----------TDALMQRLIREEFKN--HTIIAVAHRLDTI 1001
                  7777788999999988886569**********9999...........999999999999964..599*****99988 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0014      0.82      87     125 ..     271     310 ..     253     321 .. 0.83
   2 !   11.5   0.1   0.00035       0.2      84     121 ..     819     857 ..     806     869 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0014
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLinallpelel 125
                   + l++++  +++ k+++l+G+   GKStL++a+l e+ l
   KKY16042.1 271 PNILQDINLTIEKsKITLLIGPVASGKSTLLKAVLAETPL 310
                  56678888888888******************99887655 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00035
                  TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  84 aktkegleelkellkd.ktsvlvGqSGvGKStLinallp 121
                   ++k+ l+e++ ++k  + + ++G SG GKS+Li al  
   KKY16042.1 819 RSEKDVLHEISLVIKPgEKIGICGRSGSGKSSLILALFR 857
                  445678889999999878889*************88865 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00026      0.15      25      63 ..     285     324 ..     273     408 .. 0.79
   2 !    8.3   0.1    0.0049       2.9      29      51 ..     840     862 ..     831     992 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00026
      AAA_16  25 elvllsGesGvGKsslvrellr.alekdggiflrgkcdql 63 
                  ++ll+G+ ++GKs+l++++l     ++g+i++++k+  +
  KKY16042.1 285 KITLLIGPVASGKSTLLKAVLAeTPLTKGFIYVSTKAIAF 324
                 799**************99996233333566677776655 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0049
      AAA_16  29 lsGesGvGKsslvrellralekd 51 
                 + G sG+GKssl+ +l+r +e +
  KKY16042.1 840 ICGRSGSGKSSLILALFRMIEWT 862
                 6799*************866644 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   0.00014     0.083      13      39 ..     275     304 ..     263     306 .. 0.86
   2 !    7.9   0.1    0.0071       4.1      23      39 ..     839     855 ..     826     863 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00014
      AAA_23  13 qeidF...skgltlItGpNGaGKTTildAi 39 
                 q+i++   ++++tl++Gp  +GK+T+l A+
  KKY16042.1 275 QDINLtieKSKITLLIGPVASGKSTLLKAV 304
                 5677788888*****************996 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0071
      AAA_23  23 lItGpNGaGKTTildAi 39 
                  I+G  G+GK++++ A+
  KKY16042.1 839 GICGRSGSGKSSLILAL 855
                 6************9887 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00059      0.34       4      30 ..     283     309 ..     280     336 .. 0.86
   2 !    8.6   0.1    0.0038       2.2      10      29 ..     840     859 ..     835    1000 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00059
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqld 30 
                 + +i++++G++ +GK+tll+ +l + +
  KKY16042.1 283 KSKITLLIGPVASGKSTLLKAVLAETP 309
                 5789*****************998865 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0038
      AAA_22  10 vtGesGtGKTtllrrlleql 29 
                 ++G sG+GK+ l+  l++  
  KKY16042.1 840 ICGRSGSGKSSLILALFRMI 859
                 8************9999986 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.015       8.9       3      23 ..     288     308 ..     286     335 .. 0.81
   2 !   11.4   0.1   0.00046      0.26       1      21 [.     837     857 ..     837     875 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.015
                 EEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgek 23 
                 +++G   +GKStL++a + e+
  KKY16042.1 288 LLIGPVASGKSTLLKAVLAET 308
                 689*************98764 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00046
                 EEEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg 21 
                 +++i Gr+ +GKS+Li al++
  KKY16042.1 837 KIGICGRSGSGKSSLILALFR 857
                 699***************987 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   0.00017     0.097      15      43 ..     275     304 ..     273     342 .. 0.81
   2 ?    5.8   0.0     0.017       9.9      26      66 ..     838     874 ..     825     988 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00017
      AAA_15  15 kdveidlsee.ltvliGkNnsGKSsileal 43 
                 +d+ + ++++ +t+liG+ +sGKS++l+a 
  KKY16042.1 275 QDINLTIEKSkITLLIGPVASGKSTLLKAV 304
                 66666666666****************995 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.017
      AAA_15  26 tvliGkNnsGKSsilealdlFlnnkekknkkvikiekedle 66 
                   ++G+ +sGKSs++ al  +++ +    + +i+++  dl+
  KKY16042.1 838 IGICGRSGSGKSSLILALFRMIEWT----SGTIVVDGLDLS 874
                 569**************97777655....455555555555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00097      0.56      27      59 ..     278     311 ..     274     336 .. 0.81
   2 !    6.4   0.0    0.0099       5.7       8      58 ..     809     860 ..     802     874 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00097
       AAA_7  27 elllknkkpvllvGptGtGKtviikdllkkld.k 59 
                 +l ++++k +ll+Gp+ +GK++++k +l + + +
  KKY16042.1 278 NLTIEKSKITLLIGPVASGKSTLLKAVLAETPlT 311
                 6789999*******************99988733 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0099
       AAA_7   8 kfseilVptvdtvr.ysyllelllknkkpvllvGptGtGKtviikdllkkld 58 
                 +f++i V    + + + + ++l++k + ++ ++G +G+GK+++i  l++ ++
  KKY16042.1 809 EFKNISVSYKRSEKdVLHEISLVIKPGEKIGICGRSGSGKSSLILALFRMIE 860
                 556666655554432455678999999*****************99887665 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1    0.0018         1      30      83 ..     379     419 ..     339     424 .. 0.72
   2 ?    6.7   0.0     0.015       8.7      64      88 ..     958     982 ..     942     984 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0018
     SbcCD_C  30 sgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiat 83 
                   +lSGG++q    +a+a   +a+ys++       r+++LD+ Fs++D+++++ 
  KKY16042.1 379 GVSLSGGQRQR---VAIA---RAVYSKK-------RIILLDDVFSGMDSNTAHM 419
                 55667777733...3344...5566664.......9*************98875 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.015
     SbcCD_C  64 lrlvfLDEAFsklDeesiatllell 88 
                  ++v+LDEA s++D ++ a + +l+
  KKY16042.1 958 GKIVVLDEATSSVDRKTDALMQRLI 982
                 579***********99887776666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00033      0.19       2      31 ..     287     320 ..     286     404 .. 0.86
   2 ?    4.0   0.5     0.089        52       4      21 ..     840     857 ..     838    1003 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00033
      AAA_33   2 vllvGlpGsGKstlaerllkklg....avllssd 31 
                 +ll+G+ +sGKstl++ +l++++    ++ +s+ 
  KKY16042.1 287 TLLIGPVASGKSTLLKAVLAETPltkgFIYVSTK 320
                 689****************999887776667665 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.089
      AAA_33   4 lvGlpGsGKstlaerllk 21 
                 ++G +GsGKs l+  l +
  KKY16042.1 840 ICGRSGSGKSSLILALFR 857
                 69********99877765 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   0.00012     0.071     116     156 ..     271     311 ..     229     318 .. 0.84
   2 ?    2.0   0.0      0.16        90     115     161 ..     821     867 ..     805     875 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
       T2SSE 116 ekiaevlrkavrerglilvsGgTgsGKttllyallkeinks 156
                 ++i + ++  +++ ++ l+ G+  sGK+tll a+l+e + +
  KKY16042.1 271 PNILQDINLTIEKSKITLLIGPVASGKSTLLKAVLAETPLT 311
                 66777788889999999******************998765 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.16
       T2SSE 115 kekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderiv 161
                 ++++ + ++  ++    i + G  gsGK+ l+ al  +i+ ++  iv
  KKY16042.1 821 EKDVLHEISLVIKPGEKIGICGRSGSGKSSLILALFRMIEWTSGTIV 867
                 45666666777777788999***************999988766665 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0021       1.2       3      37 ..     289     323 ..     287     366 .. 0.82
   2 ?    4.5   0.1     0.056        32       1      18 [.     838     855 ..     838     865 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0021
                 EEEBTTTTHHHHHHHHHTS--S---SSS---S-EE CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlgedilprgpnptTrrple 37 
                 ++G + sGKS++l a+l e  l +g + ++ + + 
  KKY16042.1 289 LIGPVASGKSTLLKAVLAETPLTKGFIYVSTKAIA 323
                 79****************99999988877776665 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.056
                 EEEEEBTTTTHHHHHHHH CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaL 18 
                 i ++G   sGKSS++ aL
  KKY16042.1 838 IGICGRSGSGKSSLILAL 855
                 789***********9887 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       3.5     2e+03      90     112 ..      76      98 ..      65     105 .. 0.73
   2 ?    4.4   0.0      0.07        40       3      24 ..     288     309 ..     285     341 .. 0.75
   3 ?    6.0   0.0     0.023        14       1      20 [.     837     856 ..     837     881 .. 0.85
   4 ?   -1.4   0.0       4.5   2.6e+03      84     119 ..     960     999 ..     943    1000 .. 0.53

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 3.5
                 HHHHCHHHHHHHHHHHCSSS-EE CS
         Roc  90 rssenlkeWlkelkkvagkspvi 112
                 +  ++ ++W+k+++++++ + ++
  KKY16042.1  76 SAARRQQKWMKSIEARVKVTSAM 98 
                 45567899******998765554 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.07
                 EEESSTTSSHHHHHHCHCT-CC CS
         Roc   3 vlvGdsgvGKtsllkrfvedkf 24 
                 +l+G  ++GK++llk ++ ++ 
  KKY16042.1 288 LLIGPVASGKSTLLKAVLAETP 309
                 699************9987764 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.023
                 EEEEESSTTSSHHHHHHCHC CS
         Roc   1 KvvlvGdsgvGKtsllkrfv 20 
                 K+ ++G sg+GK+sl+  + 
  KKY16042.1 837 KIGICGRSGSGKSSLILALF 856
                 899************98876 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 4.5
                 EEEEEGHHH...HCHHHHHHH.HHHHCSSS-EEEEEE-TT CS
         Roc  84 ilvydsrss...enlkeWlke.lkkvagkspvilvgnkiD 119
                 i+v+d+ +s   ++ +  ++  ++++ ++  +i v+ ++D
  KKY16042.1 960 IVVLDEATSsvdRKTDALMQRlIREEFKNHTIIAVAHRLD 999
                 4455533221114445555441456667777777777776 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.061        35       2      19 ..     288     305 ..     288     365 .. 0.83
   2 ?    7.5   0.0      0.01       5.9       1      22 [.     838     859 ..     838     907 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.061
      AAA_18   2 lltGtpGvGKttlakeLs 19 
                 ll G+ ++GK+tl k++ 
  KKY16042.1 288 LLIGPVASGKSTLLKAVL 305
                 589***********9974 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.01
      AAA_18   1 IlltGtpGvGKttlakeLskrl 22 
                 I+++G +G+GK++l  +L ++ 
  KKY16042.1 838 IGICGRSGSGKSSLILALFRMI 859
                 89************99997764 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0006      0.35       2      39 ..     285     327 ..     284     332 .. 0.84
   2 ?    0.1   0.1       1.1   6.1e+02       3      21 ..     837     855 ..     835     859 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0006
   PduV-EutP   2 kkilliGkvgsGKttLtqalkg.....eelkYkktqaiefsde 39 
                 k  lliG+v sGK tL +a+       + ++Y +t+ai f d+
  KKY16042.1 285 KITLLIGPVASGKSTLLKAVLAetpltKGFIYVSTKAIAFCDQ 327
                 6789************99976646666678999**99999887 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.1
   PduV-EutP   3 killiGkvgsGKttLtqal 21 
                 ki + G++gsGK +L  al
  KKY16042.1 837 KIGICGRSGSGKSSLILAL 855
                 77789*********98766 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1     0.001      0.59      15      55 ..     281     318 ..     272     426 .. 0.83
   2 ?    1.0   0.0      0.59   3.4e+02      24      40 ..     839     855 ..     827     882 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.001
    ATPase_2  15 lerepneiyfiYGpegsGKtaLlkeiienledkdkyviyyi 55 
                 +  e+++i ++ Gp  sGK++Llk ++ +   + k  iy++
  KKY16042.1 281 I--EKSKITLLIGPVASGKSTLLKAVLAET-PLTKGFIYVS 318
                 4..4589******************99988.3445567765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.59
    ATPase_2  24 fiYGpegsGKtaLlkei 40 
                  i G+ gsGK++L+  +
  KKY16042.1 839 GICGRSGSGKSSLILAL 855
                 588**********9865 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.028        16      53      77 ..     284     308 ..     272     321 .. 0.87
   2 ?    6.1   0.0    0.0095       5.5      52      79 ..     834     861 ..     812     890 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.028
      DUF815  53 annvLLwGarGtGKSslvkallney 77 
                 ++  LL+G   +GKS+l+ka+l+e+
  KKY16042.1 284 SKITLLIGPVASGKSTLLKAVLAET 308
                 56689****************9875 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0095
      DUF815  52 pannvLLwGarGtGKSslvkallneyae 79 
                 p +++ + G  G+GKSsl+ al++ ++ 
  KKY16042.1 834 PGEKIGICGRSGSGKSSLILALFRMIEW 861
                 56677789*************9987654 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00082      0.47       2      43 ..     284     324 ..     283     353 .. 0.83
   2 ?   -2.4   0.0         8   4.6e+03       7      25 ..     840     858 ..     837     884 .. 0.80
   3 ?   -1.5   0.0       4.1   2.4e+03      62      76 ..     956     969 ..     929     995 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00082
      AAA_14   2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderd 43 
                 +ki ++ G+  +GK+tllk ++ e     + ++y++ +   +
  KKY16042.1 284 SKITLLIGPVASGKSTLLKAVLAETP-LTKGFIYVSTKAIAF 324
                 6899*****************99988.679999998877665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 8
      AAA_14   7 itGaRrvGKTtllkqlike 25 
                 i G   +GK+ l+  l++ 
  KKY16042.1 840 ICGRSGSGKSSLILALFRM 858
                 6677789*****9999865 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 4.1
      AAA_14  62 eekktylflDEiqev 76 
                 + k ++++lDE+  +
  KKY16042.1 956 R-KGKIVVLDEATSS 969
                 3.6788999998765 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0036       2.1       4      49 ..     273     317 ..     270     322 .. 0.81
   2 ?    3.0   0.0     0.089        52      21      51 ..     840     870 ..     836     875 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0036
  Zeta_toxin   4 llkdkkypsqerPklillgGqpGAGKselaellkdelerqgnvvrl 49 
                 +l+d++  + e+ k+ ll G  ++GKs+l++++ +e+  +++++ +
  KKY16042.1 273 ILQDIN-LTIEKSKITLLIGPVASGKSTLLKAVLAETPLTKGFIYV 317
                 566665.566888999*******************99877777766 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.089
  Zeta_toxin  21 lgGqpGAGKselaellkdelerqgnvvrldp 51 
                 + G +G+GKs+l+ +l + +e +++ +++d+
  KKY16042.1 840 ICGRSGSGKSSLILALFRMIEWTSGTIVVDG 870
                 6799**********99999997777777775 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.24   1.4e+02       4      25 ..     286     308 ..     283     321 .. 0.80
   2 ?    8.5   0.0    0.0027       1.5       4      84 ..     837     976 ..     835     989 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.24
      AAA_24   4 kiliyGpsgiGKTtlakel.gpk 25 
                   l++Gp  +GK+tl+k    ++
  KKY16042.1 286 ITLLIGPVASGKSTLLKAVlAET 308
                 5789************9876444 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0027
      AAA_24   4 kiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdie.......................................swedfldevvel.... 59 
                 ki i G sg+GK++l++ l   + +i    G+  +d+ ++ +++                                       +          l    
  KKY16042.1 837 KIGICGRSGSGKSSLILAL---FRMIEWTSGTIVVDGLDLSNVPqqdirlrlnavpqdpyfivgtvhlnldpyqttteieaihA----------Lskvg 922
                 899****************...88888888988888888888876655555555555555555555555554444433333330..........13334 PP

      AAA_24  60 .............................aaeladyktlviDtideleelclae 84 
                                              +a l++ k++v+D ++  ++ +++ 
  KKY16042.1 923 lwqtcitsldvemkpnelsygqrqlfclaRAILRKGKIVVLDEATSSVDRKTDA 976
                 444444444444777777777777777777777777777777777766665555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.088        51      16      38 ..     282     304 ..     276     322 .. 0.82
   2 ?    6.3   0.0     0.012       6.9      23     113 ..     840     982 ..     830     994 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.088
      AAA_30  16 sgdrvavltGpAGtGKttalkal 38 
                 ++ ++++l Gp  +GK+t+lka+
  KKY16042.1 282 EKSKITLLIGPVASGKSTLLKAV 304
                 555799***************98 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.012
      AAA_30  23 ltGpAGtGKttalkalreaweaa.ggrvi..glAptgkaAkvLa.......................eelgieastiakllkrlk.............. 81 
                 + G+ G+GK+ ++ al +++e   g +++  gl  ++   ++++                                        +              
  KKY16042.1 840 ICGRSGSGKSSLILALFRMIEWTsG-TIVvdGLDLSNVPQQDIRlrlnavpqdpyfivgtvhlnldpY----------------Qttteieaihalskv 921
                 6799999999999999888888844.433257777777777777555555554444444433333331................222222222233345 PP

      AAA_30  82 .............................grarlepgtllivDEagmvdtkqlaallkaae 113
                                              +ra l++g++++ DEa     ++++al++++ 
  KKY16042.1 922 glwqtcitsldvemkpnelsygqrqlfclARAILRKGKIVVLDEATSSVDRKTDALMQRLI 982
                 5566788888888889999999999999977788888999999999888888888887764 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0006      0.35      86     108 ..     282     304 ..     275     328 .. 0.80
   2 ?   -0.5   0.0       0.8   4.6e+02      94     119 ..     841     867 ..     838     901 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0006
    AAA_PrkA  86 erkqilyllGPvggGksslverl 108
                 e+ +i +l+GPv++Gks+l +++
  KKY16042.1 282 EKSKITLLIGPVASGKSTLLKAV 304
                 67899*************97665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.8
    AAA_PrkA  94 lGPvggGksslverlkklleaa.piya 119
                  G  g+Gkssl+ +l +++e +    +
  KKY16042.1 841 CGRSGSGKSSLILALFRMIEWTsGTIV 867
                 57789************9998753333 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.036        21      30      53 ..     281     304 ..     268     316 .. 0.85
   2 ?   -0.7   0.1       1.6   9.1e+02     153     189 ..     407     444 ..     388     446 .. 0.79
   3 ?    4.0   0.0     0.054        31      29      54 ..     831     856 ..     810     870 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.036
      AAA_25  30 lpagelallaGapgtGKttlaldl 53 
                 + + +++ll+G+ ++GK+tl+  +
  KKY16042.1 281 IEKSKITLLIGPVASGKSTLLKAV 304
                 678899*************98655 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.6
      AAA_25 153 ralgg.densnsdvgalvealeriarrtgaavllvhHv 189
                  +++g d+n ++ v+  +  ++ i r  g++v++  H+
  KKY16042.1 407 DVFSGmDSNTAHMVSTRLLGAQGILRSAGVTVVVATHT 444
                 45566699999999555555666669**********97 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.054
      AAA_25  29 llpagelallaGapgtGKttlaldla 54 
                 ++  ge + ++G++g+GK+ l l l 
  KKY16042.1 831 VIKPGEKIGICGRSGSGKSSLILALF 856
                 6788999999***********99885 PP

>> Guanylate_kin  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1    0.0014      0.79       2      35 ..     284     318 ..     283     322 .. 0.86
   2 ?   -1.0   0.0       2.1   1.2e+03       7      31 ..     840     864 ..     836     869 .. 0.80
   3 ?   -3.1   0.0       9.5   5.5e+03      87      99 ..     952     964 ..     939     972 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0014
                    SSEEEEESTTTSSHHHHHHHHHHHSTTTEE.E--E CS
  Guanylate_kin   2 rrpvvlvgpsgaGksslkkaLlselpekfg.vsvs 35 
                    ++   l+gp   Gks+l ka+l+e p + g + vs
     KKY16042.1 284 SKITLLIGPVASGKSTLLKAVLAETPLTKGfIYVS 318
                    56788*********************999966665 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.1
                    EESTTTSSHHHHHHHHHHHSTTTEE CS
  Guanylate_kin   7 lvgpsgaGksslkkaLlselpekfg 31 
                    + g sg Gkssl+ aL++  + + g
     KKY16042.1 840 ICGRSGSGKSSLILALFRMIEWTSG 864
                    7899************987766655 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 9.5
                    HHHHHTTSEEEEE CS
  Guanylate_kin  87 eevlekgkiviLD 99 
                    +++l kgkiv+LD
     KKY16042.1 952 RAILRKGKIVVLD 964
                    78999*******9 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.2    0.0093       5.4       2      23 ..     286     307 ..     285     314 .. 0.87
   2 ?    3.1   0.0      0.11        62       3      23 ..     838     858 ..     836     879 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0093
                 EEEEEESTTCCHHHHHHHHHCT CS
        cobW   2 vtvltGflGsGKTtLlnhllen 23 
                 +t+l G++ sGK+tLl+++l++
  KKY16042.1 286 ITLLIGPVASGKSTLLKAVLAE 307
                 68999*************9965 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
                 EEEEESTTCCHHHHHHHHHCT CS
        cobW   3 tvltGflGsGKTtLlnhllen 23 
                 ++++G  GsGK++L+ +l + 
  KKY16042.1 838 IGICGRSGSGKSSLILALFRM 858
                 5799***********998765 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00074      0.43     243     264 ..     283     304 ..     277     307 .. 0.86
   2 ?   -1.1   0.1       1.1   6.1e+02     380     411 ..     427     457 ..     362     459 .. 0.56
   3 ?   -0.6   0.1      0.75   4.3e+02     334     371 ..     951     987 ..     946    1010 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00074
                 -SSEEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 243 pkGvtlIvGggfhGKsTLLeAl 264
                 + ++tl++G+ + GKsTLL+A+
  KKY16042.1 283 KSKITLLIGPVASGKSTLLKAV 304
                 456*****************97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.1
                 HHHHHHHH--EEEEEESS-GCCTTT-SEEEEE CS
  ABC_ATPase 380 vrelykklgvstilvvggsgdyldvAdtvilm 411
                 ++ + +++gv t++v+    ++l++Ad++i++
  KKY16042.1 427 AQGILRSAGV-TVVVATHTVNLLPLADHIIAL 457
                 3444445555.355666666777777777766 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.75
                 HHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG- CS
  ABC_ATPase 334 mealeagakllLiDEDtsAtNlmirDermqelvskeke 371
                 ++a+ ++ k++++DE ts +     D++mq+l+ +e +
  KKY16042.1 951 ARAILRKGKIVVLDEATSSVDRKT-DALMQRLIREEFK 987
                 5678888999**********9887.********87654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1051 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.54
# Mc/sec: 5869.58
//
Query:       KKY16043.1  [L=354]
Description: putative glutamate decarboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-61  206.6   0.0    5.4e-61  206.4   0.0    1.0  1  Pyridoxal_deC    Pyridoxal-dependent decarboxylase conserved 
      9e-05   21.6   0.1    0.00011   21.3   0.1    1.1  1  Aminotran_5      Aminotransferase class-V
    0.00014   21.2   0.0    0.00017   21.0   0.0    1.1  1  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.4   0.0   9.1e-65   5.4e-61     103     373 ..       6     283 ..       1     285 [. 0.94

  Alignments for each domain:
  == domain 1  score: 206.4 bits;  conditional E-value: 9.1e-65
                    -EEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTS.HHHHHCCEEEEEETTS-HHHHHHHHHHT-E...EEEE--BTTTBB-HHHHHHHHHHHHCT CS
  Pyridoxal_deC 103 gggvlqvgssestllallAartkvikemkekgkelkeaeildklvlytsdqahssvekaalvlgvk...lrvipldengklrgaalekaieedkek 195
                    +gg+ ++g+s s+  all ar+   +  k++g++      + +  ++ts+++h+s+ekaa+++g++   ++++p+d  g ++ ++l +++++  e 
     KKY16043.1   6 AGGISTQGGSASNATALLIARNTLYPDTKTHGNQ------NHRFAIFTSAHSHYSIEKAAQMVGFGsnaVKLVPADSAGCMISSELARLVQKSLED 95 
                    99******************************98......89***********************9999*************************** PP

                    T.EEEEEEEEBS-TTT-BB--HHHHHHHHHHCT-EEEEE-TTGGGGGGSGGGGGGGTTGGGESEEEEECCCCTS--SS-EEEEESSCCGCHHHH-E CS
  Pyridoxal_deC 196 GlipffvvatlGttvlgaFddlkelgdicekydlwlHvDAAyaGsaficpeirhllkgieradSitvnphKlllvlldcsalivkdkealqqalql 291
                    G +p+f++at+GttvlgaFd + e+ +i ++++lwlHvD  ++Gs + ++ + h+l g  +adS+++nphK+l+v++ cs l+  d    + a++l
     KKY16043.1  96 GETPLFINATAGTTVLGAFDPIVEISQISKRHQLWLHVDGSWGGSTIFSKSHNHKLVGSHVADSLAINPHKMLGVPVTCSFLLGPDLRVFKAANTL 191
                    ************************************************************************************************ PP

                    EECCCT.TT........TTTSEECCCGSSSSSGHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTEEECS..TTBSSEEEEE CS
  Pyridoxal_deC 292 eaeYLehed........sdvaadlgtkaiplsrrvrilklwfvlralGveglqnqirksvelakyleklirkderfeiva..evelglVcFr 373
                     a YL+h+              d+ + +++++rr ++lkl + +  +G  g+++qi++ +++a yl++l+ ++++  +v+   + +  VcF 
     KKY16043.1 192 PAAYLFHDIdtvqnadqQPGMWDIADLTLQCGRRGDSLKLALSWIYYGASGFEAQIDNAFRIATYLASLVVEHQDLVLVSsyPPPCLQVCFY 283
                    ******987554442222224689999************************************************99999788899999995 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   1.9e-08   0.00011      89     204 ..      43     169 ..       9     212 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.9e-08
                  SEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH-......-TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-T... CS
  Aminotran_5  89 deivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekll......nektklvaithvsnvtGtiqpveeigklakkkgalvlvDaa... 177
                    i +++  h +   ++q++  +    vk +p+d+ g +  +el+ l+       e++  +  t+  +v+G ++p+ ei ++ k+++ +++vD++   
   KKY16043.1  43 FAIFTSAHSHYSIEKAAQMVG-FGSNAVKLVPADSAGCMISSELARLVqksledGETPLFINATAGTTVLGAFDPIVEISQISKRHQLWLHVDGSwgg 139
                  356777778888887777777.888899999**999999877776666555553355566778999***************************98555 PP

                  TTTTTS---HHHHT...ESEEEEETTTTTS CS
  Aminotran_5 178 qavghipidvkklg...vDflafsghKllg 204
                  +++ ++  + k +g   +D la+  hK+lg
   KKY16043.1 140 STIFSKSHNHKLVGshvADSLAINPHKMLG 169
                  667776666666554447899999999888 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   2.9e-08   0.00017      53     231 ..      11     259 ..       4     322 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.9e-08
                      ES-HHHHHHHHH...........HHH--TTEE.EEE.ETT-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S-TTS-EEEEEEE CS
  Beta_elim_lyase  53 vpqGtaAnsill...........killqrgee.viv.tepahihfdetgaiaelagvklrdlknkeaGkmdlekleaaikevgaheekiklisl 133
                      +  G a+n+ +l           k++ ++++   i+ + ++h+    + +++ +++  ++ ++ ++aG m   +l++++++  +  e + +i  
       KKY16043.1  11 TQGGSASNATALliarntlypdtKTHGNQNHRfAIFtSAHSHYSIEKAAQMVGFGSNAVKLVPADSAGCMISSELARLVQKSLEDGETPLFINA 104
                      5567777777766676666666667774444313330334777777777777778888999999999************996662333334444 PP

                      ESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHH..TTSSEEEEESSSTT--SS-.EEEEE-HH........... CS
  Beta_elim_lyase 134 tvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemf..syvDsvtmslkKdllanvG.gvlafrddel......... 215
                      t  + +        + + e+++i k++++ lh+Dg         ++ + ++++   ++Ds+ +   K l+++v  ++l++ d            
       KKY16043.1 105 TAGTTV----LGAFDPIVEISQISKRHQLWLHVDGSWGGST-IFSKSHNHKLVgsHVADSLAINPHKMLGVPVTcSFLLGPDLRVfkaantlpa 193
                      433333....447899*******************955555.5666666666655669***************999999998866888888888 PP

                      ....................................................HHHHHHHHHHHHT- CS
  Beta_elim_lyase 216 ..................................................edylaerveqrkylgg 231
                                                                        e  ++++ + + yl++
       KKY16043.1 194 aylfhdidtvqnadqqpgmwdiadltlqcgrrgdslklalswiyygasgfEAQIDNAFRIATYLAS 259
                      888877777777777777777777777777776666666666666666665666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.33s 00:00:00.87 Elapsed: 00:00:00.53
# Mc/sec: 1995.61
//
Query:       KKY16044.1  [L=5663]
Description: putative nonribosomal peptide synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.2e-294  974.4   0.0    2.5e-67  227.4   0.0    7.3  7  AMP-binding    AMP-binding enzyme
   2.9e-240  797.6   0.0    8.6e-45  153.2   0.0    6.3  6  Condensation   Condensation domain
    1.9e-61  204.3   5.1    1.1e-12   48.1   0.0    6.0  5  PP-binding     Phosphopantetheine attachment site
    9.9e-17   61.7   0.0      0.075   14.0   0.0    5.9  5  AMP-binding_C  AMP-binding enzyme C-terminal domain
    4.5e-09   36.1   2.5        1.1    8.7   0.0    5.3  5  DUF2884        Protein of unknown function (DUF2884)
     0.0007   19.8   5.7         87    3.5   0.0    5.6  5  DUF5122        Domain of unknown function (DUF5122) beta-prop


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.9   0.0   3.8e-69   1.1e-65       2     423 .]     464     867 ..     463     867 .. 0.83
   2 !  226.6   0.0   1.3e-70     4e-67       2     423 .]    2008    2412 ..    2007    2412 .. 0.85
   3 !   44.2   0.0   3.1e-15   9.4e-12       2      94 ..    3092    3182 ..    3091    3185 .. 0.92
   4 !   92.5   0.0   6.9e-30   2.1e-26     280     423 .]    3219    3376 ..    3192    3376 .. 0.88
   5 !  227.4   0.0   8.2e-71   2.5e-67       2     423 .]    4058    4460 ..    4057    4460 .. 0.84
   6 !   59.5   0.0   7.4e-20   2.2e-16       3     100 ..    5144    5242 ..    5142    5273 .. 0.86
   7 !   92.9   0.0   5.4e-30   1.6e-26     260     423 .]    5266    5433 ..    5249    5433 .. 0.85

  Alignments for each domain:
  == domain 1  score: 221.9 bits;  conditional E-value: 3.8e-69
                  HHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE CS
  AMP-binding   2 eeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli 99 
                  e++a  +p ++a+     +  lTY++l++ +nrlA +L +lG++++  V ++ ++s    va+la+lkaG++ v l p+ ++++l+ i++  ++ v++
   KKY16044.1 464 EQRALSQPTAPAICA--WDGDLTYKDLNDLSNRLAFYLINLGIRSEVIVPLCFEKSRWTSVAILAVLKAGGAFVLLEPSQPEARLRSIIQRLQPPVIL 559
                  67888999*****76..7889***************************************************************************** PP

                  ETCTCCC...HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHH CS
  AMP-binding 100 atvdsel...leklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkle 194
                    ++ +      +l ++ +     ++ + ld+ +      l+ + ++      ++  + +++++l+y+++TSG+TG+PKGVm+sh +++++v+ +  +
   KKY16044.1 560 --TSIAShglGTMLMPNNG----LAVAVGLDSPQ------LPVALPD------HRSLPVISASSLMYMVFTSGSTGTPKGVMISHSAFSSAVYHQ--S 637
                  ..32111001122222221....12222222222......2222211......23444689******************************9996..4 PP

                  HCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT.-SEEEEE CS
  AMP-binding 195 trfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlss.lrlvllg 291
                   + +l+++++vl +  +++++++  + +++l++G+++++++++a+   + + e+i + ++++ + +P+v++ l     ++      d ++ ++++ lg
   KKY16044.1 638 SYLSLSPTSRVLDFSAYSFDISI-RNFFTTLSRGGCLCVPSEKARK--DNITEFILTSRANTAHFTPSVARTLD----PQ------DVPGlVKVL-LG 721
                  5688999***************7.***************9988774..4688********************92....44......899966665.55 PP

                  SS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TT.TSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHH CS
  AMP-binding 292 geplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDee.tgepvpdgeeGellvrgpgvmkgYlkkpeataea 388
                  ge + ++ ++++ a++  +v+ gYG++E+t+  t + +    + ++++Gk +      +vD++ +  ++p g+ Gell+ gp v +gYl + ++ta a
   KKY16044.1 722 GEEVLSNDVQRWPAHV--QVIIGYGPSECTPTSTLNSEVSGATLVPRIGKGVGA-VTWVVDPAdHDVLLPIGVIGELLLEGPIVGRGYLDDLDKTALA 816
                  5555555556777776..599************98777788899*******755.55666665045566***************************** PP

                  EEE................TCCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding 389 fds................egrwlrTGDlgrldedGyleivgRkkdliklr 423
                  f++                +gr+++TGDl+r++edG+l +vgRk+ ++k+r
   KKY16044.1 817 FIEnprwllegvdgyypgrQGRLYKTGDLVRYNEDGSLTFVGRKDTQVKIR 867
                  **8899**********975578***************************96 PP

  == domain 2  score: 226.6 bits;  conditional E-value: 1.3e-70
                   HHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESE CS
  AMP-binding    2 eeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakv 97  
                   e++a  +p ++a+     +  lTYr+l++ ++rlA +L  lGv+++  V ++ ++s    va+la+lkaG++ v l p+ ++++l+ +++  ++ v
   KKY16044.1 2008 EQRALSQPTAPAICA--WDGELTYRDLNNLSTRLAYHLVDLGVRPEVIVPLCFEKSRWTSVAILAVLKAGGAFVLLEPSQPEARLRSVIQRLQPPV 2101
                   67888999*****76..7789*************************************************************************** PP

                   EEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHH CS
  AMP-binding   98 liatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkl 193 
                   ++  ++ +  + l  +    +  ++ + ld  +++    l  ++++++     ++ + +++++l+y+++TSG+TG+PKGVm+sh +++++++ +  
   KKY16044.1 2102 IL--TSIT-SHGLGTILIPNDGLAVAVGLD--SPQ----LT-ATPPDHR---TTTLPVISASSLMYVVFTSGSTGTPKGVMISHSAFSSATHHQ-- 2182
                   **..3222.233322222111122222233..221....11.2222222...3355579****************************9998885.. PP

                   HHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEE CS
  AMP-binding  194 etrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvl 289 
                   + + +l++ +++l +  +++++++ ++ l++++ G+++++++++ +  ++ + e++   kv+v + +P++++ l  +           ++ l+++l
   KKY16044.1 2183 SSYLGLSSASRILDFSAYSFDVAI-SNHLMTFITGGCLCVPSEEIR--KNSITEFMISTKVNVAHFTPSLARTLQPH----------HFPDLQTLL 2265
                   456888899**************7.***************998887..5678899999****************666..........5667***** PP

                   EESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBE.ETTSEEEEEEEETTS-SEBTT-HHH CS
  AMP-binding  290 lggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepv.pdgeeGellvrgpgvmkgYlkkpea 384 
                   +gge+++ + +r + ++   +++++YG++E+t++ t++p++ d + +++ G+ + gv   +vD+++   + p g+ Gell+ gp v +gYl++ ++
   KKY16044.1 2266 IGGEAVQIDDVRGWLDVA--QMVNAYGPAECTPFSTINPQSSDPTLVPRLGRGV-GVVTWVVDPADHDVLlPIGVIGELLLEGPIVGRGYLGDLDK 2358
                   *****************6..59*************9988899999********6.77788888875444349************************ PP

                   HHHHEEE...............TCCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding  385 taeafds...............egrwlrTGDlgrldedGyleivgRkkdliklr 423 
                   ta af++               +gr+++TGDl+r++edG+l ++gRk+ ++k+r
   KKY16044.1 2359 TALAFIEnprwllegvdgypgrQGRLYKTGDLVRYNEDGSLIFIGRKDTQVKIR 2412
                   ******8899*********975578***************************96 PP

  == domain 3  score: 44.2 bits;  conditional E-value: 3.1e-15
                   HHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHT CS
  AMP-binding    2 eeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledse 94  
                   e++a  +p ++a+     +  lTY++l++ ++rlA +L  lGv+++  V ++ ++s    va+la+lkaG++ v l p+ ++++l+ i++  +
   KKY16044.1 3092 EQRALLQPTAPAICA--WDGDLTYKDLNDLSTRLAYHLVDLGVRPEVIVPLCFEKSRWTSVAILAVLKAGGAFVLLEPSQPEARLRSIIQRLQ 3182
                   566777899999966..7889*******************************************************************98766 PP

  == domain 4  score: 92.5 bits;  conditional E-value: 6.9e-30
                   CCGTT-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSC.BEETTSEEEEEEEETTS CS
  AMP-binding  280 kdlsslrlvllggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetge.pvpdgeeGellvrgpgv 374 
                   ++++ l+++l+gge+++ + +r + ++   +++++YG++E+t++ t++p++ d + ++++Gk +  v   ivD+ + + ++p g++Gell+ gp v
   KKY16044.1 3219 HRFPDLQTLLIGGEAVQIDDVRGWLDVA--QMVNAYGPAECTPFSTINPQSSDPTLVPRIGKGIGAV-TWIVDPVDHNiLLPLGTTGELLLEGPIV 3311
                   47889**********************6..59*************998889999*********8655.55666655551569************** PP

                   -SEBTT-HHHHHHHEEE................TCCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding  375 mkgYlkkpeataeafds................egrwlrTGDlgrldedGyleivgRkkdliklr 423 
                    +gYl++ ++ta +f++                +g++++TGDl+r++edG+l +vgRk+ ++k+r
   KKY16044.1 3312 GRGYLGDLDKTALTFIEnprwllegvngyypgrQGQLYKTGDLVRYNEDGSLTFVGRKDTQVKIR 3376
                   ****************8899**********975455***************************96 PP

  == domain 5  score: 227.4 bits;  conditional E-value: 8.2e-71
                   HHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESE CS
  AMP-binding    2 eeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakv 97  
                   e++a  +p ++a+     +  lTY++l++ ++rlA +L  lGv+++  V ++ ++s    va+la+lkaG++ v l p+ ++++l+ i++  ++ v
   KKY16044.1 4058 EQRALLQPTAPAICA--WDGDLTYKDLNDLSTRLAYHLVDLGVRPEVIVPLCFEKSRWTSVAILAVLKAGGAFVLLEPSQPEARLRSIIQRLQPPV 4151
                   566777899999966..7889*************************************************************************** PP

                   EEETCTCCC...HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHH CS
  AMP-binding   98 liatvdsel...leklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvas 190 
                   ++  ++        +l ++ +      l + +  d+     ++ ++++++         + ++ ++l+y+++TSG+TG+PKGVm+ h++++++++ 
   KKY16044.1 4152 IL--TSIVSyglGTMLMPNNG------LAVAIGLDS-----PQLTAAPPDYH---F--LPVISGSSLMYVVFTSGSTGMPKGVMIPHNAFASATYY 4229
                   **..32111001222222222......222222222.....22233333322...3..22589************************999888777 PP

                   HHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-S CS
  AMP-binding  191 lkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslr 286 
                   +  + + +l++ +++l +  +++++++ ++ l++++ G++++++++ ++   + + e+++  kv++ + +P++++ l      +      d++ l+
   KKY16044.1 4230 Q--SSYLSLSSASRILDFSAYSFDVAI-SNHLMTFITGGCLCVPSEGTRK--DNITEFMSSTKVNIAHFTPSLARTLQP----Y------DFPDLQ 4310
                   5..456778899**************7.***************9988884..4688*********************44....4......888999 PP

                   EEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBE.ETTSEEEEEEEETTS-SEBTT- CS
  AMP-binding  287 lvllggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepv.pdgeeGellvrgpgvmkgYlkk 381 
                   ++ +gge+++ + +r++ +++  +v+++YG++E+t+++t++ ++++ + ++++Gk +      ivD+ + + + p g++Gell+ gp v +gYl++
   KKY16044.1 4311 TLHMGGEAVQVSDVREWLDVV--QVINAYGPAECTPICTINANSTNPSLIPRIGKGVGA-VTWIVDPVDHNILlPLGTTGELLLEGPIVGRGYLGD 4403
                   9999****************8..59*************9955577779********855.555666655554449********************* PP

                   HHHHHHHEEE...............TCCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding  382 peataeafds...............egrwlrTGDlgrldedGyleivgRkkdliklr 423 
                    ++ta +f++               +gr+++TGDl+r++edG+l +vgRk+ ++k+r
   KKY16044.1 4404 LDKTALTFIEnprwllegvdgssgrQGRLYKTGDLVRYNEDGSLTFVGRKDTQVKIR 4460
                   *********8899*********975578***************************96 PP

  == domain 6  score: 59.5 bits;  conditional E-value: 7.4e-20
                   HHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEE CS
  AMP-binding    3 eqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvl 98  
                   ++a  +pd++a+     +  lTY++l++ +nrlA +L  lG++++  V ++ ++s+   va+la+lkaG++ v l+p+ ++ +l+ i++++++ v+
   KKY16044.1 5144 TRALLQPDAPAVCA--WDGELTYKDLNDLSNRLAYHLIDLGIQSEVIVPLCFEKSLWTSVAILAVLKAGGAFVLLDPSQPESRLQTIINQVRPMVI 5237
                   566779******77..7889**************************************************************************** PP

                   E...E CS
  AMP-binding   99 i...a 100 
                   +   +
   KKY16044.1 5238 LssaE 5242
                   *4331 PP

  == domain 7  score: 92.9 bits;  conditional E-value: 5.4e-30
                   EHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTT CS
  AMP-binding  260 vPrvleallesgalkaakkakdlsslrlvllggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeet 355 
                   +P++++ l            + ++ lr++ll+ge+++ + ++++ ++   +++++YG++E+t+  t++ ++ d + ++++Gk + gv   +vD+++
   KKY16044.1 5266 TPSLARTLQP----------HHFQNLRILLLAGEAVQLDDVQEWLDVA--QMVNAYGPAECTPYSTMNIQSSDPTLVPRIGKGV-GVVTWVVDPAD 5348
                   4444444422..........36788**********************6..59*************88666888899*******6.77788888875 PP

                   SCBE.ETTSEEEEEEEETTS-SEBTT-HHHHHHHEEE................TCCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding  356 gepv.pdgeeGellvrgpgvmkgYlkkpeataeafds................egrwlrTGDlgrldedGyleivgRkkdliklr 423 
                      + p g+ Gell+ gp v +gYl + ++ta af++                +gr+++TGDl+r++edG+l +vgRk+ ++k+r
   KKY16044.1 5349 HDVLlPIGVIGELLLEGPIVGRGYLDDLDKTALAFIEnprwllegvdgyypgrQGRLYKTGDLVRYNEDGSLTFVGRKDTQVKIR 5433
                   444349******************************8899**********975578***************************96 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.6   0.0   1.1e-31   3.2e-28       2     453 ..      26     441 ..      25     444 .. 0.82
   2 !  113.1   0.0   4.4e-36   1.3e-32       7     435 ..    1096    1513 ..    1092    1527 .. 0.84
   3 !  134.8   0.0   1.1e-42   3.4e-39       2     456 ..    1558    1988 ..    1557    1989 .. 0.78
   4 !  143.0   0.0   3.8e-45   1.1e-41       2     452 ..    2659    3068 ..    2658    3072 .. 0.85
   5 !  146.3   0.0   3.7e-46   1.1e-42       2     453 ..    3624    4035 ..    3623    4038 .. 0.88
   6 !  153.2   0.0   2.9e-48   8.6e-45       1     455 [.    4709    5122 ..    4709    5124 .. 0.86

  Alignments for each domain:
  == domain 1  score: 98.6 bits;  conditional E-value: 1.1e-31
                   EEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHHHH CS
  Condensation   2 qdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseeeea 98 
                   +d+yp sp+Q+++  +++  +++  y++ ++l +++++ l++l++a++++++ h +LR ++++  +  + Qv+l+ r+ ++++++  d  ++e    
    KKY16044.1  26 EDVYPCSPLQEGL--FSQTLQRPGEYIQLSALDITPQVSLSALRNAWEQILHEHQILRSRIVQLPRFGICQVVLK-RHEKWHYVDDMDEYARE---- 115
                   799*******996..799999*****************************************98999******96.56678666666444444.... PP

                   HHHHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHHHHHH CS
  Condensation  99 ieefaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdlekee 195
                      +a+++++ +  L++   f  +l    + +  +l+ +HH + DG+ l+ +  +l +l     +g+ l+    +++k ++++    l +++  +++
    KKY16044.1 116 ---QANRTVSFGKPLTEYAIFTGKLDG-GNVGKRFLWVYHHALYDGWFLSQIPGKLKALL----SGHALKR--QPQFKCFIKH----LLQQNPDSSK 198
                   ...344444456678888888888877.99999**************7777777776666....***9877..4559******....8888899*** PP

                   HHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTT.CSTCHHC- CS
  Condensation 196 aYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgRes.eikdierm 291
                   +YW+  l+++ +   +p++      ++f+ +  + +++ +         +++ v++ ++   a++++    tg +d+v+gt+ sgR+s +  +++++
    KKY16044.1 199 DYWASSLDNFQA-SHFPTQ------QNFQRSGAMHNIETWCRL---GRRQNTTVKMSTIIYGAWAMVVALNTGVTDVVFGTVLSGRKSlSRARLQEV 285
                   ********9544.668888......555544444455333333...4458999************************************778***** PP

                   -SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEECEE...E... CS
  Condensation 292 vGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselklsvssveaeee 388
                   +G  + t+P+r++++  ++   +++ v+++  +  p+++++l ++ +  e++r       f++ ++ +      ++  es+ + +k s ++ +  e+
    KKY16044.1 286 TGPTIVTVPVRVRINFRENVYAFLEMVQQEGTERTPYEQTGLRNISRINEHTRR---ACEFQTLLTNQP----LDYLLESDDDVGKWS-KIRP-IEQ 373
                   **********************************9*******999888888875...566888888887....556666666667766.3334.679 PP

                   ..SSEEEEEEE..TTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHH.HSTTSBCCC-----HHHH CS
  Condensation 389 skydlslease..tngkltikieYntslFdeetierflerlkelleqvi.ehpeqklselkllsdaek 453
                     y ls++ +    +g+++ik        ++   +r+le+l  +++q++ + p+q ls+++ l+++++
    KKY16044.1 374 MTYGLSIQCTLdkAQGGIEIKGRSDDRFLNRLYTQRVLEQLSWAIQQLAnARPNQLLSNINFLPPKDR 441
                   99*****9998667888998887666666777889999999999999883579999999999988765 PP

  == domain 2  score: 113.1 bits;  conditional E-value: 4.4e-36
                    XXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHHHHHHH CS
  Condensation    7 lspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseeeeaiee 101 
                    lsp+Q  +++++  + +  ++ +++ l l++e   + l+  l++l++ h  LR +f +++ g+  Q  + ++  ++++l++sd++e++    + +
    KKY16044.1 1096 LSPIQ--QLYFSCQHHKDAHFDQSFLLDLSPECPTSSLHAYLETLVQAHSMLRSRFAKDKLGRWKQLETRDAVGSFRFLQFSDDDEND----MLR 1184
                    9****..999999999******************************************************************766666....666 PP

                    HHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHHHHH.. CS
  Condensation  102 faqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdleke.. 194 
                     ++   +e++d+e gp + aal++ + ++  l++s+HH+ vD vS++i+l dl +l+    +g++l+ + + +++++   +++y++   +  +  
    KKY16044.1 1185 SIRS-CRETLDIEHGPILVAALIS-SPKKERLFISIHHLAVDFVSWRIILGDLETLF----SGQTLQPSHSVSFQTWCRLQAEYAARSLQSAHil 1273
                    6664.7889***************.********************************....*******99999****999998876554333322 PP

                    ........HHHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHH.HHT-SEEEEEEEEES CS
  Condensation  195 ........eaYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLsk.ytgqddivvgteisg 280 
                            ++YW e +++     +L+++ ++++k ++         + +t+++l++  +  ++   +++ a l  + s+  t ++  +v  e++g
    KKY16044.1 1274 pfsiqqpfSTYWHENVDS-----ALLRK-RTLKKFTIP--------RTQTQALLNQCNEPFQTRPVELMIAGLLFAFSRtFTDRTTPAVFCEAHG 1354
                    223333337999999997.....77777.555555555........45566678888999999999999999999998736999999******** PP

                    STT..CSTCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HH........C CS
  Condensation  281 Res..eikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgq........e 365 
                    Re     +di+r+vG+F+ + P+ i+ +++ +++++i++vk++++++ p++g  +    + l + +++s    f +++ f ny g          
    KKY16044.1 1355 REPwdDSIDISRTVGWFTTIFPVQITKQGQVELTDIIRQVKDCVRRI-PDNGWAFFTS-SLLSQAESTSFLDRFPTEVLF-NYSGLyqqlerpdA 1446
                    **999789***************************************.8888877554.4455566677788899***99.99988656654444 PP

                    CCEEECCCCSEEECEE...E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHH CS
  Condensation  366 seeeesqlselklsvssveaeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqvi 435 
                    +   +   ++ +++ s   +++++ +d+ +++ e  g++ ++i+   +l + ++i  + + ++++l++++
    KKY16044.1 1447 KFRRMMLPEGCDVGHSLR-EKSIAIFDVGIQVEE--GSFVVSISHPPDLKHHQEILSWTRLYEDTLKKMA 1513
                    444444444778885555.59999******9999..***********************99999999876 PP

  == domain 3  score: 134.8 bits;  conditional E-value: 1.1e-42
                    EEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEE.....ES---HHHHHHHHHHHHHH-SSCCEEEEE....TTEEEEEE-TT-----EEEE-T. CS
  Condensation    2 qdeyplspaQkrmwflekleeessaynmqavlkl.....egeldlerlekalqelierhdaLRtvflee..engepvQvileerevelevleisd 89  
                    +d+ p sp+Q+ +++ +   +  + y   +v k+     e+++d  r++ a+++++ rh++LR +++ +      +  ++l++ + ++  + i  
    KKY16044.1 1558 EDVFPCSPMQEAILVSQARAP--YNYRSCLVAKVapafgEERVDAARIQYAWKSVVARHPILRAILVPNmpGISGIAHIVLKHPQPSISSFRID- 1649
                    7889999***99988877664..3444444444411122567788899******************9863345577788889999999888888. PP

                    .TSSSHHHHHHHHHHHHHTC--SCCCS.-SEEEEEEESSTT.EEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHH CS
  Condensation   90 leeseeeeaieefaqkdlqepfdLekg.pLfraalfkiaen.rlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaewe 182 
                     +e++ ++++ ++  +    p   +++ +L ++  + i +n  +++ l++ H i+DG+S+ i+lr+l+++Y     g   +++ ++ Y ++   +
    KKY16044.1 1650 -KEKA-DHKVFRAHYD----PVAHSQEtSLQHHLSVGICNNgDVYICLEINHAISDGFSVDIILRELQEAY----AGTLQQDLAVS-YCEFLSYL 1733
                    .5554.3444444443....444444425555555666555156889************************....55555555666.66666554 PP

                    HHHHCSHHHHHHHHHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEE CS
  Condensation  183 qqyleskdlekeeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgte 277 
                    ++ +       + ++W+  l   +p   Lp   ++   ++  +  ++ +l     +k++k+++ ++vt  +v ++a+gl+L++ytg +++ +g+ 
    KKY16044.1 1734 KDNSD----SIAGDFWDGELIDAEP-CLLPVVGDEEHGSESAQALVRSSL---GFDKIQKFCELWEVTPATVIQTAWGLVLKQYTGISRTWFGML 1820
                    44333....34678***88887666.556666333333333323333333...4589************************************** PP

                    EESSTTCSTCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECC CS
  Condensation  278 isgReseikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesq 372 
                    +sgR  +i+++ ++vG F+  lP  + ++++kt  +++++v+ + lk+ ++q   le + +  +++     spLf++++sf+  +  +++ +  +
    KKY16044.1 1821 TSGRDLPINGLHQIVGPFIGLLPCHVVMRDSKTILDAMREVQSTYLKSISYQTSSLEAIHNFRNRNS----SPLFNTILSFQKAPHGDESHDVVR 1911
                    ***********************************************************66655444....7*********99777777777777 PP

                    CCSEEECEE...E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC-----HHHHHHH CS
  Condensation  373 lselklsvssveaeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqviehpeqklselkllsdaekekL 456 
                    + + k         + ++y++++++  + ++++i ++Y + + ++ t   ++e l+ ++ ++++ p+  ++e+++l ++ek+ L
    KKY16044.1 1912 FIDKKWL-------DPTDYAVNISVAHRPRSIEIGLNYGSGRISKPTALGLQEALVSTIAELTKSPNRLINEIEVLAPREKKIL 1988
                    6666666.......6789**************************************************************9865 PP

  == domain 4  score: 143.0 bits;  conditional E-value: 3.8e-45
                    EEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHH CS
  Condensation    2 qdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseee 96  
                    qd+yp +++Qk++  l      + +y +q +l+l++e++++ +++a++++++  ++LRt+++++ +g+ +Q + +++ + +++ +++        
    KKY16044.1 2659 QDIYPCTQLQKGLMALTLRL--TGSYKLQYILELSPEIEINKFRNAWESVVRSTPILRTRIIQDRDGNLMQLVVDDEIHWVQACDVA-------- 2743
                    89**********88777665..789************************************************99877777666666........ PP

                    HHHHHHHHHHHTC--SCCCS.-SEEEEEE.ESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSH CS
  Condensation   97 eaieefaqkdlqepfdLekg.pLfraalf.kiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqylesk 189 
                       e ++q+   +++ +e g pL r +l+ + ++++ ++++s+HH++ DG Sl+ ++    ++Y    +++  plp+  p+ +++++    l+  
    KKY16044.1 2744 ---EYLVQD---NSIPMEIGqPLARYGLVlNSSKQSRWFIWSIHHTLYDGASLSMIIDLVRQAY----DNS--PLPNHIPFNRFVKA----LQDI 2822
                    ...234442...3444444449****99724556677889************************....555..5666677*******....7778 PP

                    HHHHHHHHHHHHHH......S.---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTT CS
  Condensation  190 dlekeeaYWseqlegelpvlq.LpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgRes 283 
                    d+ ++ +YW+  le+   +l+ +p+    +   ++k d++  +           la ++++tl ++  aa++++ s  tg++d+v+g ++sgR  
    KKY16044.1 2823 DRLSTVSYWQSKLER--YQLApFPPP--LSGGHNIKPDTKLSSY------FPMLLAIDSDATLATLVRAAWAIVTSHHTGSNDVVFGATVSGRHA 2907
                    999***********8..333336666..6677778877776666......45568899************************************* PP

                    CSTCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEE CS
  Condensation  284 eikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselkl 378 
                    ++++ier++G  + t+P+ri++    t + +++ v++ + ++ p+++ +l+e+ k +e  r+      f++ ++ +     e++  ++++ +  +
    KKY16044.1 2908 AVVGIERIIGPTIATVPVRIQIPSTGTVAAFLEYVQTIATEMIPYEQAGLQEIAKISEDARQ---ACGFQTLLVVQP---PEDIRIKNSFGRWRV 2996
                    *****************************************************999998886...6789******88...455555556666666 PP

                    CEE...E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHH.STTSBCCC-----HHH CS
  Condensation  379 svssveaeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqvie.hpeqklselkllsdae 452 
                    +v+   a++   y+l+l+ + ++++++    + ++  +   +er+l+++  +++ +++ + +q ls+++ l++++
    KKY16044.1 2997 NVD---AQTFNIYALTLNCFLSDNGINTVATFDSKIIHPWLMERILDQFNSVIQHLANpNVNQGLSDINFLPPKD 3068
                    644...567889*****************************************9988657899999999998876 PP

  == domain 5  score: 146.3 bits;  conditional E-value: 3.7e-46
                    EEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHH CS
  Condensation    2 qdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseee 96  
                    +d+yp +p+Q++++ l         y++q +l++  +l+++rl +a+ e++++ ++LRt+++++ +g+ +Qv+ +e e+ +     +  e ++  
    KKY16044.1 3624 EDVYPCTPLQQGLLALTTKT--AGRYVLQNILEI-NSLNVKRLLDAWSEVVQKTPILRTRIVQHSDGQLMQVVIDE-EFRF-----A--ESDD-- 3705
                    799*********99887655..678********6.68************************************986.3444.....2..2222.. PP

                    HHHHHHHHHHHTC--SCCCS.-SEEEEEEES.STTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSH CS
  Condensation   97 eaieefaqkdlqepfdLekg.pLfraalfki.aenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqylesk 189 
                      + e++ +    ++  e g pL r +l++  a+++ ++++s+HH + DG Sl+ ++    ++Y      +++pl + tp+ +++ +    l+++
    KKY16044.1 3706 --LHEYLVR--DTGIPTEIGrPLSRYGLVSNsASKQKWFVWSIHHALYDGASLRMIIDLVWQAY------SNIPLTKHTPFNQFVRS----LQEA 3786
                    ..3444444..3677777777*******9861568899**************************......9999*99**********....6667 PP

                    HHHHHHHHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTC CS
  Condensation  190 dlekeeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgRese 284 
                    d   +  YW  +l+g  +++++p+    p  +++k d+   kl+++  ++l +la+  ++tl ++  aa++++ s  tg++d+v+g ++sgR  +
    KKY16044.1 3787 DHSATTVYWHSMLSG-YQSVAFPPL--LPVAYDVKPDT---KLKSHCPNLLPELAS--DTTLATLVRAAWAIVTSHHTGSNDVVFGATVSGRHAA 3873
                    7778***********.677889999..88899999776...577789999999975..79*********************************** PP

                    STCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEEC CS
  Condensation  285 ikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselkls 379 
                    +++ier++G  + t+P+ri++    t + +++ v++ + ++ p+++ +l+e+ k +e  r+      f++ ++ +     e++++ ++l++  ++
    KKY16044.1 3874 VVGIERIIGPTIATVPVRIQIPSTGTVAAFLEYVQTIATEMIPYEQAGLQEIAKISEDARQ---ACGFQTLLVVQP---PEDYKTDNELARWRVN 3962
                    ****************************************************999998886...678*******88...7889999999999999 PP

                    EE...E.....SSEEEEEEE.TTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHH.HSTTSBCCC-----HHHH CS
  Condensation  380 vssveaeeeskydlslease.tngkltikieYntslFdeetierflerlkelleqvi.ehpeqklselkllsdaek 453 
                     +   +++   y l+l+ +  +ng++     + ++  d+  ++++le++  +++q++ + p+q+ls+++ l+++++
    KKY16044.1 3963 TD---IQTFNVYTLTLNCFLsDNGGIDTIAIFDSQIIDKWLMRQLLEQFSWTVQQLAnARPNQQLSNINFLPPKDR 4035
                    44...456889******99999****99999************************98358**********998875 PP

  == domain 6  score: 153.2 bits;  conditional E-value: 2.9e-48
                    EEEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSH CS
  Condensation    1 vqdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleesee 95  
                    vqd+yp +++Q+++  l   ++ s +y +q +l+l++ ldl r++ a++ +++  ++LRt+++++ +g+ +Qv+ +e e+++    i+    ++ 
    KKY16044.1 4709 VQDIYPCTSLQEGLIALT--SKFSGSYTLQNILTLSPDLDLPRFRAAWELIVQATPILRTRIVQNSDGRLLQVVVKE-EMQW----IE---SDD- 4792
                    699**********76554..445799************************************************976.4566....34...223. PP

                    HHHHHHHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHH CS
  Condensation   96 eeaieefaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskd 190 
                       +++++++d + p+  + +pL r +l++  ++  ++++++HH + DG Sl+i+++  +++Y    ++++ ++ ++ pY  +++     l   d
    KKY16044.1 4793 ---LQQYLTRDCSTPMT-TGQPLSRYSLVNNGSKPCWFVWTIHHALYDGTSLPIIINLVSRAY----RKQSFEA-PT-PYNLFVKY----LHDID 4873
                    ...78899998888886.345******************************************....7777666.44.59999998....66677 PP

                    HHHHHHHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCS CS
  Condensation  191 lekeeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgResei 285 
                    +    ++W+++l++  +++++p+   ++ ++ +k d++  +       +l     ++++tl ++  aa++++ s  tg++d+v+g ++sgR  ++
    KKY16044.1 4874 RRAMMEFWQTTLSR-YESAAFPSV--PSISYPLKPDTTLSAH----CPRL--PEVDSDTTLATLVRAAWAIVTSHHTGSNDVVFGATVSGRHAAV 4959
                    78899********8.566899999..5566666655543332....2333..345789************************************* PP

                    TCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEECE CS
  Condensation  286 kdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselklsv 380 
                    ++ier++G  + t+P+ri++    t + ++k v++ + ++ p+++ +l+e+ k +e  r   r   f++ ++ +  + +  +++e+ + + + ++
    KKY16044.1 4960 VGIERIIGPTIATVPVRIQIPSTGTVAAFLKYVQTIATEIIPYEQAGLQEIAKISEDAR---RACGFQTLLVVQP-PEDRGINNEFGQWQVNTKI 5050
                    ***************************************************99999666...6889*******99.6666666666666666664 PP

                    E...E.....SSEEEEEEE.TTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHH.HSTTSBCCC-----HHHHHH CS
  Condensation  381 ssveaeeeskydlslease.tngkltikieYntslFdeetierflerlkelleqvi.ehpeqklselkllsdaekek 455 
                    +     +   y+l+l+ +  +n++  i   + ++  d+  i+++le++  ++ q++ ++p+q +s++++l++++++ 
    KKY16044.1 5051 N-----TFNTYALTLQCFLsENSGVDIIATFDSQIIDKWRIQQLLEQFSWAIRQLAnSDPDQGISKINVLPTKDRDT 5122
                    4.....555********9989*********************************98469***********9998765 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.1   1.5e-12   4.4e-09       2      64 ..    1009    1070 ..    1008    1073 .. 0.95
   2 !   48.1   0.0   3.6e-16   1.1e-12       2      65 ..    2553    2615 ..    2552    2617 .. 0.96
   3 !   47.0   0.0   8.3e-16   2.5e-12       2      65 ..    3518    3580 ..    3517    3582 .. 0.97
   4 !   27.6   0.0   9.1e-10   2.7e-06       3      66 ..    4605    4667 ..    4603    4668 .. 0.93
   5 !   42.4   0.0   2.3e-14   6.8e-11       2      65 ..    5591    5653 ..    5590    5655 .. 0.96

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 1.5e-12
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaela 64  
                  ++++l+a vl++pl +i++d+++  lG+DS++a+++ +a +   g+ i+  d+++ +++++++
  KKY16044.1 1009 TIQALWAHVLNIPLASIGLDDSFLRLGGDSITAMQVSSAARSS-GLVITTGDILQKKSISRII 1070
                  799***************************************9.***************9987 PP

  == domain 2  score: 48.1 bits;  conditional E-value: 3.6e-16
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaa 65  
                  ++++l+a+vl++ +  i++d+++f lG+DS+++++l+++ ++  g+ ++  d+f+hp l +l++
  KKY16044.1 2553 TIQALWARVLNLQPNNIGLDDSFFRLGGDSITVMRLVSEARQN-GLMLSAVDMFQHPRLVDLSK 2615
                  799****************************************.***************99985 PP

  == domain 3  score: 47.0 bits;  conditional E-value: 8.3e-16
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaa 65  
                  ++++l+a+vl++ +  i++d+++f lG+DS+++++l+ + + e g++++  d+f +p l++la+
  KKY16044.1 3518 TIQALWARVLNLQPANIGLDDSFFRLGGDSITVMRLVTEAQVE-GLKVSAVDVFRYPRLGDLAR 3580
                  799****************************************.******************97 PP

  == domain 4  score: 27.6 bits;  conditional E-value: 9.1e-10
  PP-binding    3 lrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaay 66  
                  l++l+a vl++++  i+ d+++f lG++S+++++l+++ + e g+ ++  d+f  p l + a++
  KKY16044.1 4605 LQRLWAYVLEIDPAYISIDDSFFRLGGNSITVMRLVSKARTE-GFLLSAVDVFRRPRLVDQAQA 4667
                  789***************************************.*********999988887776 PP

  == domain 5  score: 42.4 bits;  conditional E-value: 2.3e-14
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaa 65  
                  ++++l+a vl++ +  i++d+++f lG+DS++a++l+ + + + g+ +++ d+f +p l++la 
  KKY16044.1 5591 TIQALWAHVLNLQPANIGLDDSFFRLGGDSIAAMRLVTEARTK-GFLLSVGDIFRYPRLSDLAT 5653
                  799****************************************.******************96 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00021      0.63      42      76 .]     937     971 ..     913     971 .. 0.87
   2 !   11.1   0.0    0.0002      0.61      41      76 .]    2477    2515 ..    2435    2515 .. 0.86
   3 !    8.1   0.0    0.0018       5.3      42      76 .]    3446    3480 ..    3414    3480 .. 0.88
   4 !    9.4   0.0    0.0007       2.1      42      76 .]    4532    4566 ..    4506    4566 .. 0.88
   5 !   14.0   0.0   2.5e-05     0.075      42      76 .]    5519    5553 ..    5504    5553 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00021
                    HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C  42 leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    l +e+++++++ l++y+vp  +  + +lp+t++GK
     KKY16044.1 937 LSAEIEDRLAECLPSYMVPTLFFSIRQLPLTATGK 971
                    679*****************999999********9 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0002
                     -...HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   41 a...leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76  
                     a   l  e++++++++l++y+vp  +  + ++p+t++GK
     KKY16044.1 2477 AvilLSTEIEDKLAERLPSYMVPTLFFSIRRFPLTATGK 2515
                     1444678*****************999999********9 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0018
                     HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   42 leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76  
                     l  ++++++++ l++y+vp  +  + +lp+t++GK
     KKY16044.1 3446 LSVQIEDRLAECLPSYMVPTLFFSIRQLPLTATGK 3480
                     6678999*************999999********9 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.0007
                     HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   42 leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76  
                     +++e+++++ ++l++y+vp  + ++++lp+  sGK
     KKY16044.1 4532 IPAEVEDRLVERLPSYMVPTLFFAISRLPLMVSGK 4566
                     789*******************************9 PP

  == domain 5  score: 14.0 bits;  conditional E-value: 2.5e-05
                     HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   42 leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76  
                     l +e +++++++l++y+vp  +  v +lp+t++GK
     KKY16044.1 5519 LSAEMEDKLAERLPSYMVPAIFFSVRQLPLTATGK 5553
                     779*******************************9 PP

>> DUF2884  Protein of unknown function (DUF2884)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0017       5.2      38     101 ..     861     924 ..     838     935 .. 0.68
   2 ?    2.5   0.0     0.029        86      39      78 ..    2407    2445 ..    2384    2469 .. 0.78
   3 !    8.7   0.0   0.00036       1.1      38     111 ..    3370    3439 ..    3347    3443 .. 0.76
   4 !    5.2   0.0    0.0043        13      38      87 ..    4454    4502 ..    4431    4516 .. 0.75
   5 !    7.7   0.0   0.00077       2.3      38     119 ..    5427    5504 ..    5404    5540 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0017
     DUF2884  38 gkkveLsadqqqaleqyseeirqqvPevaelasdgvdlAsdaldevltel.lgedsevaeklktk 101
                 +++v++ + q+ +l + ++ +++ +P+++ela +++  A +  ++ l+ + +g ++   ++++ +
  KKY16044.1 861 DTQVKI-RGQRVELGEVEHHVHACLPQAKELAAEVIVPAGQGASSMLAVFmTGMEDLIESDIRYS 924
                 344555.46899999**********************9999988888777244444444444444 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.029
     DUF2884   39 kkveLsadqqqaleqyseeirqqvPevaelasdgvdlAsd 78  
                  ++v++ + q+ +l + ++ +++ +P+++el+ ++v  A +
  KKY16044.1 2407 TQVKI-RGQRVELGEVEHHVHACLPQAKELVAEVVVPAGQ 2445
                  44444.46899999********************998876 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00036
     DUF2884   38 gkkveLsadqqqaleqyseeirqqvPevaelasdgvdlAsdaldevltellgedsevaeklktkldelkarvke 111 
                  +++v++ + q+ +l + ++ +++ +P+++ela +++  A +  ++ l+ ++ + ++    ++++++ ++++ ++
  KKY16044.1 3370 DTQVKI-RGQRVELGEVEHHVHACLPQAKELAAEVIVPAGQGASSMLAVFMTDMEDL---VESEMQCFQDTTDD 3439
                  344555.46899999***********************************8766655...88888888877665 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.0043
     DUF2884   38 gkkveLsadqqqaleqyseeirqqvPevaelasdgvdlAsdaldevltel 87  
                  +++v++ + q+ +l + ++ +r+ +P+++ela +++  A +  ++ l+ +
  KKY16044.1 4454 DTQVKI-RGQRVELGEVEHHVRACLPQAKELAAEVIVPAGQGASSLLAVF 4502
                  344555.46899999*********************99998877776665 PP

  == domain 5  score: 7.7 bits;  conditional E-value: 0.00077
     DUF2884   38 gkkveLsadqqqaleqyseeirqqvPevaelasdgvdlAsdaldevltellgedsevaeklktkldelkarvkekfykdgdk 119 
                  +++v++ + q+ +l + ++ +++ +P+++ela +++  A +  ++ l+ ++    +  + ++++++  +++ ++  ++  d 
  KKY16044.1 5427 DTQVKI-RGQRVELGEVEHHVHACLPQAKELAAEVIVPAGQGASSLLAVFMT---GMEDLVESEMQCSQDTTDTDSEDTTDA 5504
                  344555.46899999***************************9999999954...344457777777777777776666664 PP

>> DUF5122  Domain of unknown function (DUF5122) beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.031        92      23      32 ..     845     854 ..     842     854 .. 0.93
   2 ?    3.4   0.0     0.031        92      23      32 ..    2390    2399 ..    2387    2399 .. 0.93
   3 ?    3.4   0.0     0.031        92      23      32 ..    3354    3363 ..    3351    3363 .. 0.93
   4 ?    3.5   0.0     0.029        87      23      32 ..    4438    4447 ..    4433    4447 .. 0.93
   5 ?    3.4   0.0     0.031        92      23      32 ..    5411    5420 ..    5408    5420 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.031
     DUF5122  23 lvRLnaDGsl 32 
                 lvR+n DGsl
  KKY16044.1 845 LVRYNEDGSL 854
                 8********8 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.031
     DUF5122   23 lvRLnaDGsl 32  
                  lvR+n DGsl
  KKY16044.1 2390 LVRYNEDGSL 2399
                  8********8 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.031
     DUF5122   23 lvRLnaDGsl 32  
                  lvR+n DGsl
  KKY16044.1 3354 LVRYNEDGSL 3363
                  8********8 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.029
     DUF5122   23 lvRLnaDGsl 32  
                  lvR+n DGsl
  KKY16044.1 4438 LVRYNEDGSL 4447
                  8********8 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.031
     DUF5122   23 lvRLnaDGsl 32  
                  lvR+n DGsl
  KKY16044.1 5411 LVRYNEDGSL 5420
                  8********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (5663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.71u 0.32s 00:00:02.02 Elapsed: 00:00:00.56
# Mc/sec: 30435.89
//
Query:       KKY16045.1  [L=1546]
Description: putative hc-toxin synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-67  226.9   0.0    3.1e-39  134.9   0.0    2.5  2  Condensation   Condensation domain
    2.7e-66  223.9   0.0    4.1e-66  223.3   0.0    1.3  1  AMP-binding    AMP-binding enzyme
    3.4e-13   49.7   0.0    9.7e-13   48.3   0.0    1.8  1  PP-binding     Phosphopantetheine attachment site
  ------ inclusion threshold ------
       0.16   13.0   0.0       0.53   11.3   0.0    1.9  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.9   0.0   6.8e-43   3.1e-39       2     453 ..      42     452 ..      41     455 .. 0.82
   2 !   89.1   0.0   5.6e-29   2.5e-25      28     443 ..    1152    1532 ..    1133    1538 .. 0.81

  Alignments for each domain:
  == domain 1  score: 134.9 bits;  conditional E-value: 6.8e-43
                   EEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-.TT-----EEEE-T..TSSSHHH CS
  Condensation   2 qdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvil.eerevelevleisdleeseeee 97 
                   +d+yp +++Q r +f++ l+ e+  y +q vl l+ +ld++r+ +a+  ++++ ++LRt+++++  + ++Qv+  e+ +++ + ++i++    + + 
    KKY16045.1  42 KDVYPCTSLQ-RDLFVASLK-EHGRYTLQNVLDLK-GLDEKRFCSAWSLVVQMSPILRTRIVQHSVKGVLQVVVdEYIQYN-QGVDIQQ-YLLD-DG 132
                   689*******.999999998.55679*******75.6***********************************994455554.4778883.3333.57 PP

                   HHHHHHHHHHTC--SCCCS-SEEEEEEESSTT.EEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHHHH CS
  Condensation  98 aieefaqkdlqepfdLekgpLfraalfkiaen.rlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdlek 193
                   +i++ + k           pL r +l++ +++ + ++++s+HH + DG Sl+ ++    ++Y      ++++  + t +  +++        +d   
    KKY16045.1 133 CISTELGK-----------PLSRYGLVTDSSKqSRWFIWSIHHSLYDGTSLPMIIDLVRQAY------NNISVTKHTAFNLFVQY----VRDRDHLA 208
                   77777775...........9*****9987665156889************************......33333333445555444....44478899 PP

                   HHHHHHHHHH......S...---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCSTC CS
  Condensation 194 eeaYWseqlegelpvlq...LpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseikd 287
                   ++aYW+  leg+   ++   Lp+     ak ++k   l i +       l + a e+g+tl ++  aa++++ s  tg++d+v+g ++sgR  ++++
    KKY16045.1 209 TKAYWQAALEGYRS-AAfpsLPPV-MHEAKPDMK---LNIHC-------LVQKALESGTTLATLVRAAWAIVTSHHTGSNDVVFGATVSGRHAAVVG 293
                   99********9554.550235555.444444444...55555.......66777899**************************************** PP

                   HHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEECEE... CS
  Condensation 288 iermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselklsvssve 384
                   ier++G  + t+P+ri++    t + +++ v++ + ++ p+++ +l+e+ k +e  r+      f++ ++ +  + +  +++ + + + +  v+   
    KKY16045.1 294 IERIIGPTIATVPVRIQIPSTGTVAAFLEYVQTIATEMIPYEQAGLQEIAKISEDARQ---ACGFQTLLVVQP-PEDIRIKNSFGRWRVNADVQ--- 383
                   *************************************************999998886...678*******98.44444444444444444444... PP

                   E.....SSEEEEEEE.TTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHH.HSTTSBCCC-----HHHH CS
  Condensation 385 aeeeskydlslease.tngkltikieYntslFdeetierflerlkelleqvi.ehpeqklselkllsdaek 453
                     +   y+l+l+ +  +ng++     + ++  d+  ++++le++  +++q++ + p+q ls+++ l+++++
    KKY16045.1 384 --TFNIYALTLNCFLsDNGGIDTIATFDSQIIDKWLMRQLLEQFSWTVQQLAnARPNQLLSNINFLPPKDR 452
                   ..5569*******999**********************************98358*********9998765 PP

  == domain 2  score: 89.1 bits;  conditional E-value: 5.6e-29
                    EEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHHHHHHHHHHHHHTC--SCCCS-SEEEE CS
  Condensation   28 nmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseeeeaieefaqkdlqepfdLekgpLfraa 122 
                    ++q+ l l   + +  l+ a ++lie+  +LRt+f+   +++ +Q+ l++ ++ ++v++ +        +++++++ +++++   L ++      
    KKY16045.1 1152 VQQFFLDLGHDVSIAKLRGACETLIEHCAILRTQFVLY-EDTHWQITLKKVPLVFKVEDGT-------SQCTSSVVDREKNSIVPLGASYTAFTV 1238
                    688999999999***********************998.8999******999999666666.......357899999999999999988766655 PP

                    EEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHHHHHHHHHHHHHH......S---BSS- CS
  Condensation  123 lfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdlekeeaYWseqlegelpvlqLpkdkar 217 
                    l+ ++  ++ lll + H   DG+Sl+i+++ l ++Y    +g++l+    t+++ y+       + +++ ++++YWs++l+g+ p          
    KKY16045.1 1239 LH-HKGYGYRLLLHISHAQYDGISLPIIIQTLLNAY----HGRSLRP--HTEFSAYIHL-----MHRQRASSASYWSNILKGSRP---------- 1311
                    55.5********************************....***9665..777*****98.....67778999**********555.......... PP

                    --SS---S-EEEEEEEE-S-HHHHHHHH...STSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCSTCHHC--SS-EEEEEEEEE--TT- CS
  Condensation  218 pakrsfkadrlsikldeeteeklrklak...eqgvtlndvllaalgllLskytgqddivvgteisgReseikdiermvGlFvntlPlridvkeak 309 
                    + + s+ ++    + ++ + +++r +a+   + +vt+ ++  +a++++Ls +++++d+ +g  ++gR+   ++ie++ G   nt+P+r+ v++++
    KKY16045.1 1312 TYVTSILGKHPLYEGESRLVKATRLIAApelSGNVTIASLITTAWAVILSLLSRRTDVLFGRLVAGRNGRLEGIESIPGPCHNTVPVRVLVSKET 1406
                    3344444444444444444444444444111569***********************************999*******************9999 PP

                    BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HH...CCCEEECCCCSEEECEE...E.....SSEEEEEEETT CS
  Condensation  310 tfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgq...eseeeesqlselklsvssveaeeeskydlsleasetn 401 
                    +  +++ +v+++ l++e ++ +   +L   l++++      Lfd+v+    + +     +  + sql+ ++ ++++++        + ++ + ++
    KKY16045.1 1407 RGIDILDSVQQQHLSIEGADCVNRLDLAICLDRNEG----ILFDSVVKHFGFSLTpsfSVAGKRSQLQHIDSQLTTAK-------HIGISSYSEG 1490
                    999*************99999988888766665554....79999988745444444344444445555555555555.......7888888899 PP

                    SSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCC CS
  Condensation  402 gkltikieYntslFdeetierflerlkelleqviehpeqkls 443 
                     +l+++i+ +++  +++  +++++ l+e +e ++++ +++l+
    KKY16045.1 1491 PNLRLTIDARSEILESQVAQKLADALVECIEHLTTEFQEPLE 1532
                    999999999999999999999999999999999988877765 PP

>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.3   0.0   9.1e-70   4.1e-66       2     423 .]     475     879 ..     474     879 .. 0.84

  Alignments for each domain:
  == domain 1  score: 223.3 bits;  conditional E-value: 9.1e-70
                  HHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE CS
  AMP-binding   2 eeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli 99 
                  e++a  +p ++a+     +  lTYr+l++ ++rlA +L  lGv+++  V ++ ++s    va+la+lkaG++ v l p+ ++++l+ +++  ++ v++
   KKY16045.1 475 EQRALSQPTAPAICA--WDGELTYRDLNNLSTRLAYHLVDLGVRPEVIVPLCFEKSRWTSVAILAVLKAGGAFVLLEPSQPEARLRSVIQRLQPPVIL 570
                  67888999*****76..7789***************************************************************************** PP

                  ETCTCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHC CS
  AMP-binding 100 atvdsel.leklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletr 196
                  + + s+    +l ++ +     ++ + ld+ +l+ +  l+++          ++ + ++p++l+y+++TSG+TG+PKGVm+sh +++++v+ + l+ +
   KKY16045.1 571 TSIASHGlGTMLMPNNG----LAVAVGLDSPQLPVA--LPDHR--------TTTLPVISPSSLMYVVFTSGSTGTPKGVMISHSAFSSAVYHQ-LPFY 653
                  21112221222322222....223333443333333..22222........22444689******************************9995.5544 PP

                  SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS- CS
  AMP-binding 197 fklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggep 294
                    +++d++v+ +++++++++l  ++l++++sG+++++++  ++  ++ l++ +++  +++++++P+vl+ l  s          +l+ +r ++l gep
   KKY16045.1 654 P-ISSDSRVFDFMSYSFDVSL-QNTLATFMSGGCLCVPSDQDR--KDCLADSVTRTAANIVTLTPSVLRTLEPS----------SLPTIRRLILIGEP 737
                  3.5689**************8.***************987777..5689**********************555..........7999***9****** PP

                  EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE.-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEE CS
  AMP-binding 295 lspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkiv.DeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafds 391
                  + +  l  + +++  +++++YG++E+t++ t+ +++++ + + + Gk +  v + +  ++  + ++p g +Gell+ gp + +gY  +  at++af++
   KKY16045.1 738 IHRLDLNGWIDKV--QIINTYGPSECTTASTIGDRSNNPSLIARMGKGVGAVTWIVDlNDY-NILLPIGAVGELLIEGPILGRGYMDDAPATSSAFVN 832
                  **99999999987..59*************996667777999******8766666642333.6777*******************************7 PP

                  ...............TCCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding 392 ...............egrwlrTGDlgrldedGyleivgRkkdliklr 423
                                 +gr+++TGDl++++edG+l +vgRk+ ++k+r
   KKY16045.1 833 nprwllrgastcsgrKGRLYKTGDLVHYNEDGTLTFVGRKDTQVKVR 879
                  899*********975478***************************96 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   2.2e-16   9.7e-13       2      64 ..    1024    1085 ..    1023    1087 .. 0.97

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 2.2e-16
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaela 64  
                  ++++l a vl++p+ +i+ d+++f lG+DS++a++l+++ ++   ++++++ +f h+t+a+la
  KKY16045.1 1024 TIQSLCAHVLNIPPASIGIDDSFFRLGGDSIAAMKLVGEARRN-SIQLTVANVFRHQTIASLA 1085
                  7899***************************************.******************8 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00012      0.53      42      76 .]     951     985 ..     928     985 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
                    HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C  42 leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    l++ + +++++ l+ y+vp    ++  lp+t+sGK
     KKY16045.1 951 LPARVDDRLAECLPNYMVPAVYFALTHLPMTASGK 985
                    678999999***********999999********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.01u 0.36s 00:00:01.37 Elapsed: 00:00:00.55
# Mc/sec: 8459.25
//
Query:       KKY16046.1  [L=371]
Description: putative cysteine synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-13   51.1   0.0    2.1e-13   50.3   0.0    1.3  1  PALP       Pyridoxal-phosphate dependent enzyme
      1e-06   29.2   0.0    2.1e-06   28.2   0.0    1.5  1  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   2.4e-17   2.1e-13     114     281 ..      19     168 ..       2     176 .. 0.87

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 2.4e-17
                 HHHHHHHHHHHSTTCEE--TTTSHHHHHH.HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTCCS..S.SS.. CS
        PALP 114 avaaaaelaaegegaylvsqfdnptvieg.ygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalarslragrrvtvp 211
                   ++ ++l ++ +++y+  q++n ++ ++   ++g+++l+ql ++++ +  ++G++g ++G++++lk+++p+ +vigv ++  da+ + +         
  KKY16046.1  19 QIQKLKQLGQDRQDIYNPGQYENLANPAAhDRWTGPQLLKQL-PEINIFCTGMGSAGCVTGTGRFLKKHKPSATVIGVCNSLGDAIPGPR--------- 107
                 456678999999******************************.6**********************************888888888888......... PP

                 B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH..HHHHHHC CS
        PALP 212 vsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal..klreage 281
                  + ++ d +a +      ++ + + v    +v++++ ++    +  regi+++pss++al +l   l+++++
  KKY16046.1 108 -PLSLFDKIAFP------WKQVTDAVQ---EVNSADSYRLSMAMS-REGIICGPSSGMALKGLfgFLQQQKD 168
                 .78899999888......888877777...9**************.*****************874444444 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   2.3e-10   2.1e-06       6     103 ..     257     364 ..     252     367 .. 0.70

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 2.3e-10
   Rhodanese   6 kellekgkvallDvRppeeYekghIpgAvnv..............skdtlsrakkseapllelpeellel........gidnkktvvvycdgggraaaa 82 
                 +   ++++ a+lD R+p +++ +hI+g++n+                 +l ++ k+ ++                    + + k v v+c +g+ a+ a
  KKY16046.1 257 ASKNNAPA-AVLDLRQPGDFASSHITGSLNLalpslhvetpspfdQVPILETQFKEIRD----------IlsdpdlliRLHRAKCVLVVCYTGETARLA 344
                 44444554.4*********************7776555444444433344444444444..........155555556669**************8777 PP

   Rhodanese  83 aallkklGyknvsvldGGfka 103
                   +++     + + ++GGf++
  KKY16046.1 345 CSAMRCID-IEAYSVRGGFHS 364
                 77888788.789999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.52
# Mc/sec: 2151.54
//
Query:       KKY16047.1  [L=360]
Description: putative d-amino acid [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-30  105.7   0.7    4.4e-30  105.5   0.7    1.1  1  DAO            FAD dependent oxidoreductase
    1.3e-05   24.6   0.0    0.00034   20.0   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    9.9e-05   22.8   0.1    0.00021   21.7   0.1    1.6  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0033   17.9   0.0     0.0073   16.7   0.0    1.6  1  NAD_binding_7  Putative NAD(P)-binding
     0.0057   16.6   0.0     0.0088   15.9   0.0    1.3  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
  ------ inclusion threshold ------
      0.039   13.3   0.0      0.071   12.4   0.0    1.3  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      0.051   13.8   0.1       0.14   12.4   0.1    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      0.059   12.4   0.0       0.09   11.8   0.0    1.3  1  FAD_binding_2  FAD binding domain


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.7   1.9e-33   4.4e-30       1     352 []       9     353 ..       9     353 .. 0.73

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 1.9e-33
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT.....SSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESS CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiag.....sgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaad 92 
                 ++v+ G+G+iGl tA+ L  +g  Vt++ ++  +g     + +S  ++++++s  + l ++ ++  + + +l ++r+l ++ +      +++  sl+ +
  KKY16047.1   9 HIVVLGAGVIGLQTALTLLSHGyrVTIVSSS-WPGalddpHYTSMFSGAQWRSNPA-LTDQ-QQIAWDRTTLLHWRDLIANAA-----ANSTGSSLGLE 99 
                 79*****************************.777688877999999999999887.6666.556**********99998744.....23333344322 PP

                 HHHHHHHHHHHHHH.HHTTT.TEEEEEHHH....HHHHSTTST.....TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEE.TCE CS
         DAO  93 eeelealdkllall.leagl.daelldaee....vrelepalp.....gllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeed.gkv 179
                      + +  +++l + + + ++++++++e    +  +ep  +     g+++++ y +   v+p  ++ +l++++ea+ v+ ++  +  +l+    ++v
  KKY16047.1 100 ---VRQAKFFWDSLpT-HPPsQEHWWSSNEpfvpICVIEP--EdcikrGFKAGFAYET-VAVNPILYCSWLLQQCEAHNVQKRTL-RLGNLQTAFeERV 190
                 ...3344445565532.33313357777433333223444..1344458888777777.999****************9976665.5555532211234 PP

                 EEEEEECTEEEEEEEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEE.EESSEEETTCS CS
         DAO 180 wgverttpgendaadavVnaaGawsd.llgllkeldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlv.Ggtadeesgdd 276
                 +g        + +a+avVn+aG+ ++ l+   ++      p+ gq + ++    + v +       e + d     v+pr++ +v + Gg    ++g  
  KKY16047.1 191 TGT-------R-EAHAVVNCAGLDAGiLV---GDE--TCFPTGGQTVLVRGQAHQIVTR-----RNELSGDPWEALVIPRPGENVTMlGGCK--RAGNW 269
                 444.......3.479**********9777...666..7899999999996654433333.....223555566678999987776655**98..55555 PP

                 STSCSHHHHHHHHHHHHHHSGGG......CGEEEEEEEEEEETTSSEEEEEEE..TEEEEEEEEECTTTHHHHHHHHHHHHHHH CS
         DAO 277 dpevdeedidellealrklfPql......gdvlrkwaGlrplpdglpligetp..gvkglylatGhsghGltlapatGkllael 352
                 ++e+d e  + +le+++ l P+l       d++  ++Glrp + g+p +  ++    k  ++++Gh + G+  + ++++++a+l
  KKY16047.1 270 NTEPDNEITETILERCKLLAPELlnekgnFDIVAVRVGLRPSRKGGPRVEVEEleNGKFAVHNYGHHSAGFEGSVGAAEAVAKL 353
                 56********************655554445999*******9999**9988557756678*********************975 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.5e-07   0.00034     143     172 ..       8      37 ..       2      55 .. 0.87
   2 ?    2.2   0.0     0.039        87     227     264 ..     298     334 ..     275     339 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.5e-07
                  SEEEEES-SHHHHHHHHHHHHHT-EEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 143 krivvvGgGyiGvElAaalaklgkevtlve 172
                  ++ivv G+G+iG+ +A +l + g++vt+v 
   KKY16047.1   8 DHIVVLGAGVIGLQTALTLLSHGYRVTIVS 37 
                  699999999999999999999999999985 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.039
                  EESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 227 dadlvvvavGvrpstelleeklglelderggivvdefl 264
                  + d v v vG+rps+++   ++ +e  e+g++ v  ++
   KKY16047.1 298 NFDIVAVRVGLRPSRKGG-PRVEVEELENGKFAVHNYG 334
                  5799***********996.8888988899999998776 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   9.6e-08   0.00021       1      30 [.       9      38 ..       9      46 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 9.6e-08
                EEEEECSSHHHHHHHHHHHHTTSEEEEEES CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvver 30
                ++vv+G+G+igl  A +l  +g +Vt+v  
  KKY16047.1  9 HIVVLGAGVIGLQTALTLLSHGYRVTIVSS 38
                79*************************975 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.3e-06    0.0073       6      43 ..       6      43 ..       1      97 [. 0.72

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.3e-06
  NAD_binding_7  6 kgkkvlvvGgGevAarkvrklleagakvtvvapevkee 43
                   ++ +++v G+G ++++ + +ll+ g +vt+v+     +
     KKY16047.1  6 ETDHIVVLGAGVIGLQTALTLLSHGYRVTIVSSSWPGA 43
                   5679****************************986333 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.9e-06    0.0088       2      31 ..      10      39 ..       9      58 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.9e-06
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S- CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdis 31
                + v+GaG++G + a  ++s+g++V++v  s
  KKY16047.1 10 IVVLGAGVIGLQTALTLLSHGYRVTIVSSS 39
                88************************9765 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.2e-05     0.071      30      57 ..       9      36 ..       2      41 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.2e-05
                 EEEEESTSHHHHHHHHHHHHTT-EEEEE CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvl 57
                 +++v+G+Gv Glq + t  + g +Vt++
   KKY16047.1  9 HIVVLGAGVIGLQTALTLLSHGYRVTIV 36
                 79***********************997 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   6.3e-05      0.14       1      26 [.      12      37 ..      12      41 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.3e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvllle 26
                   ++GaG+ Gl +A +L  +g++v+++ 
     KKY16047.1 12 VLGAGVIGLQTALTLLSHGYRVTIVS 37
                   89*********************986 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     4e-05      0.09       2      31 ..      10      39 ..       9      88 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4e-05
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESS CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavveke 31
                   ++V G+G+ GL  Al++  +G +v++v+  
     KKY16047.1 10 IVVLGAGVIGLQTALTLLSHGYRVTIVSSS 39
                   79*************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2440.64
//
Query:       KKY16089.1  [L=531]
Description: putative protein phosphatase type 1 complex subunit hex2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.068   13.5   3.0       0.29   11.5   3.0    2.0  1  PBP1_TM   Transmembrane domain of transglycosylase PBP1 at N-


Domain annotation for each model (and alignments):
>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   3.0   1.6e-05      0.29      34      63 ..     336     368 ..     326     381 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.6e-05
     PBP1_TM  34 dydd...eyddeedDdddddeeeevprkgkkkk 63 
                 dy+d     dd+edD+d+d++e  v  k   ++
  KKY16089.1 336 DYEDddtTLDDDEDDEDEDEDEGIVMMKHVPSR 368
                 444433377888888888888877766633332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3616.52
//
Query:       KKY16090.1  [L=294]
Description: putative histidine acid [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-27   95.7   0.0    4.4e-27   95.4   0.0    1.0  1  His_Phos_2  Histidine phosphatase superfamily (branch 2)


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.0   2.5e-31   4.4e-27      78     381 ..       7     289 ..       4     291 .. 0.88

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 2.5e-31
                 HHHHHHHHHHHHHHHHCHTCCHTTSS--TTEEEEEESSHHHHHHHHHHHHHHCHCCC---S-TTSTTGGG-TTTTCCCEEEHHHHCCCCHHCTTSHHTC CS
  His_Phos_2  78 aGrkqaeelGrqfrqrYplgLlrlhltykdlkirassegRviaSAaafakGllglegeltdllskdkdllddsnaakdlldeakkklkelltegaeacp 176
                 +G+ +a++  + +r++Yp +L+ +++    + ++a ++ Rv+++A++f+++ lg +        +    l +  a +++ +    +l+++l++  + cp
  KKY16090.1   7 TGYREAYDFAISLRTKYP-QLFTPGS---PVHVFANDYPRVVETAQNFLRAYLGVNA-------SHGPNLGTVYAVNSTGSS--NALGNSLAPS-DLCP 91 
                 6999**************.****995...9***********************8888.......344444444444444444..4677766555.59** PP

                 HHHCHHHTGGHCHHHHCHCCCCCHHHHHHHCHHH.CTTEEEE-HHHHHHHHHHHHHHHH.HHCT-TTGGGCTH..HCHHHHHHHHHHHHHHHC...... CS
  His_Phos_2 177 afewpikvakrvdelvkylkedmdeniakrleql.cpgesnllakerwdklercfyekn.kfdiskicdlydemkydalhnrylkdleelyklakvipq 273
                  + +       ++++   +++ +++ i+krl+++ ++g  nl+  ++ ++  +c +e++ + +is+++++++   ++++ ++y++dl+++y++      
  KKY16090.1  92 DYVD-----DSGVNETTIWNALYQPAIVKRLQNYiKSGSLNLTTTDIATMQYLCGFETSiRGTISPFSNVFTA--QEFQAYEYTQDLRYYYGN------ 177
                 **88.....999**********************878899*******************99************..******************...... PP

                 ..TTTCCCCHHHHHHHHHHHHHHHCTSSSEECCSCCCECS-SEEEEEE-HHHHHHHHHHCTTTTTBTTB.SSS...TTT..HCCCS-CT-EEEEEEEEE CS
  His_Phos_2 274 EygigpeeklkiGllllnpllkkilndlqrtreeatperhvrlrlyfthdshiysllnaLglpeelagedslaa..ldrlsaspelpymsqivfelyed 370
                   g+g+ +++ +  ++l+ l + +      +  ++t ++ ++l ++f  d +i +l + Lg++++ + + s+ +  ++++ +s+++ + + i+fe+ ++
  KKY16090.1 178 --GPGSATGKYMMFPFLLSLTDLLATYSPTATSNTTTTKIQPLTISFLNDGQISQLASQLGIFDSEPALPSTWMpqTRKYITSHFISMRGTITFERLSC 274
                 ..**********************9998888889*********************************998888899*********************** PP

                 .....TCTTT.EEEEEE CS
  His_Phos_2 371 .....ssekk.fyvrll 381
                      +s  + ++ r+ 
  KKY16090.1 275 pssssPS--SsKFLRIR 289
                 6543222..13555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2053.52
//
Query:       KKY16091.1  [L=334]
Description: putative nitrilase family omega-amidase related [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-34  119.8   0.0    1.6e-34  119.5   0.0    1.1  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   0.0   8.7e-39   1.6e-34       9     260 ..      23     263 ..      16     264 .. 0.89

  Alignments for each domain:
  == domain 1  score: 119.5 bits;  conditional E-value: 8.7e-39
                   -....STTHHHHHHHHHHHHHHHHHHT..TESEEEEETTTTTBSSSHHHHHHHHB...HSSSHHHHHHHHHHHHHTEEEEEEEEEEECCTTEEEEEE CS
  CN_hydrolase   9 q....kaadleanlqklleliaeAark..gadLivlPElfitgykeeahfleaAe...aglgetlallaalarkngiavvigliereltngklqayn 96 
                        + +dl++ ++++++l+++A+r   ++dL+v+PE+ + g      + +++e   +++g+++a+++a++++ +++  + ++e++   g+   +n
    KKY16091.1  23 LfqvdTPSDLKHAVDHVVSLVSRAKRAypATDLVVFPEYCVHGL----SMSTNDEiicTLDGPEVAAFKAACAEEKVWGLFSIMEKN-GLGNP--WN 112
                   34455579**********************************99....77788888889**************************96.66777..** PP

                   EEEEEETTSEEEEEEE-SS--EECTTSCECCGHHTSCS-SSS-EEEETTE.EEEEEEGGGGGSHHHHHHHHHTT-SEEEE..BH.GCCCTCHHHHHH CS
  CN_hydrolase  97 tavlldldgklvgkyrKlhLfpgeprpptaverelfepgdgipvfdtpvg.kiGaaiCyeigfpellralalkgaeilvn..lserapvpksmgppq 190
                   ++++++++g++v  yrK+h +         ve  +++ ++ i vf+ p+g k+++ iC +  fpe +r  a +gae+l++  +         +    
    KKY16091.1 113 SGITINNSGEVVNYYRKMHPW-------IPVEPWYPGNQG-ISVFEGPGGvKMSLIICHDGQFPEMAREAAYQGAEVLIRtaG------YTPPIRQS 195
                   *******************77.......445555666655.***************************************431......33456677 PP

                   HHHHHHHHHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEECCSSSTEEEEEEEEHHHHHHHH CS
  CN_hydrolase 191 wellgraralengcfviaanqvggyeqlilwpvghSaiidpdGrilaglgeeeegvliaeidladvratr 260
                   wel+ r+ a+ n ++++ ++ +g+  ++   + g +++ +p+G il++ +   ++v   ei+ ++vr+ r
    KKY16091.1 196 WELTNRTNAFTNLMYTVSVALAGT--DGTFKSMGEAMFCGPEGDILVRGNNSPDEVFACEIQVDEVRRRR 263
                   8***********************..**************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.50
# Mc/sec: 1998.61
//
Query:       KKY16092.1  [L=558]
Description: putative carboxylesterase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-56  190.5   4.6    3.4e-55  187.9   4.6    1.9  1  COesterase     Carboxylesterase family
     0.0055   16.6   0.3      0.047   13.5   0.3    2.2  1  Abhydrolase_3  alpha/beta hydrolase fold
  ------ inclusion threshold ------
       0.12   11.2   3.6       0.15   10.8   3.6    1.1  1  Apt1           Golgi-body localisation protein domain
       0.21   10.1   7.5       0.28    9.7   7.5    1.1  1  Macoilin       Macoilin family
        3.8    7.1  14.9          6    6.5  14.9    1.3  1  PAP1           Transcription factor PAP1
        7.4    4.7  15.4         10    4.3  15.4    1.1  1  RAP1           Rhoptry-associated protein 1 (RAP-1)


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.9   4.6   1.1e-58   3.4e-55      22     488 ..      50     526 ..      31     552 .. 0.71

  Alignments for each domain:
  == domain 1  score: 187.9 bits;  conditional E-value: 1.1e-58
                 CSEEEEEEEEESSB---GGGTTS--BE----SSEEECBS---BESEECSSSSSCGHHCHHHBES---EEEEEEESSSSSTTSSEEEEEEE--STTTS-B CS
  COesterase  22 ekevdaFlGiPYAepPvgelRFkkPepaepwtgvrdAtkfspaCpqnaeksekeekeleawvsEDCLyLnvytPkekkeakkklPVlVwihGggfqtgs 120
                 +  ++ ++ i++A+ P+g+lR++kP+   p +  +++   + a          +++      +EDCLy+++++P++   + ++lPV+Vw +Gggf+ gs
  KKY16092.1  50 SIGYYKYQNIRFAAVPTGDLRWAKPQW-PPVETEINTGDLADAD--------VDCS-----AEEDCLYMDIWAPAN--ATGRSLPVMVWTYGGGFTGGS 132
                 2379**********************9.4555555554443321........1222.....78***********86..478888*************** PP

                 GCGS-THHHHHHH.TSEEEEE----HHHHH-B-...SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHS..GGGTTSBS CS
  COesterase 121 aseydgsaLaaeg.nvivVtinYRlGvlGFlst...gdeeapGNvGllDqvlALrWVkenIasFGGdpervtlfGesAGaasvslllls..plsrglfk 213
                 +s+  ++ L +   + + V+ nYRlG+ G        +e  + N +++D+  A++W k+ I++FGG+p+ vt +G sAG++ v ++++    ++++lf+
  KKY16092.1 133 KSQNTPEGLFDLSkDFVFVAYNYRLGMTGLANGptfLHEGGTSNTAVWDVSHAFEWTKKYISAFGGNPDDVTAVGFSAGGSQVLFQVTRfaGHAEQLFN 231
                 ********998777***************88764455688899********************************************98668899**** PP

                 EEEEES--TTSTTTSBSHHHHHHHHHHHHTTS-CSSHHHHHHHHHCS-HHHHHHCCGGSSSSSSTTC-SSS-B--SSSSSS-HHHHHHCGC...CSEEE CS
  COesterase 214 raIlqSGsalspwaiqkkarkrakklakkvgckassskelveclrsksaeelldaqekaleasssklvsfaPvvdgdflpekPeellkseg...kvpll 309
                 +a ++S   + p a +++a +  +++ ++vgc+       ++c+r  s ++l +a  +      ++ ++f+P vdgd++ ++ e +l ++    + p +
  KKY16092.1 232 KAYVMSP-GFVPGAGHHHAEEFWMNVSSAVGCD----GGHLDCMRDVSFDDLNTAADD---IVDEYTYQFQPRVDGDIIGDTYEAQLFQKRfnfSGPFV 322
                 ******6.7889999999**************3....34589**************88...789999*************9777666665689****** PP

                 EEEETTTTHHHHCCHSTTTSSSSHHHHHHHHHHHHHHHHHHHCC.................HHHHHHHHHHHHSTTTSSTCHHHHHHHHHHHHHHHHTH CS
  COesterase 310 iGvnkdegllflaylldkeksvkkkeeklsesllkdelyleaek.................keelseaikeeytdeadrddaeksrkallelltdvlfk 391
                 i+  ++e++   +  +++++ + ++ + +   +++d+++++ ++                 k               ++ d  + + al e+l + +++
  KKY16092.1 323 ITHEQHEANSQSYSGVNSTSDIPTELRIFF-PAITDDVIERLMElypesdytsaglrfadmK---------------QSLDLTAKNYALTEALENNTWN 405
                 *********999999998744444443333.3334444444444455435555555555543...............4444444444444444444444 PP

                 HHHHHHHHHHHHTT-SEEEEEEE--STTSSS....T..................TTGSSBTTTTHHHHTTGGGTSGCSS-HHHHHHHHHHHHHHHHHHH CS
  COesterase 392 apvlrtaklhasrgspvYlYsfdyrnssskk....p..................kwmgvvhgdeleyvfglpllekeeftkedeklsrkmmtywtnFak 468
                 a v      h  + ++ Y Ys +  +ss+      +                  +  +++ ++  +   g    ++++ ++   +++ km +y+ +F+ 
  KKY16092.1 406 AMVALDEATH-GTDQSYYWYSTYTLSSSTTTtstsNsssssfasgttsasasgaAPSSSSSSNSSSTSTGSTGASSSSSSSVNSTIAIKMQKYLLSFIL 503
                 4333333333.33333333333332222222222202233333333334333333344444555555555555555545556***************** PP

                 HSSTTS...TTSS----B.TTTB CS
  COesterase 469 tgnPnk...eeeekWpkytkeee 488
                 t nPn    + +  Wpky + + 
  KKY16092.1 504 TSNPNTlwpNDKLYWPKYGNGSY 526
                 ********999*******44333 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.3   1.6e-05     0.047      46     110 ..     176     240 ..     120     285 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-05
                    THHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE-S CS
  Abhydrolase_3  46 PaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardegepkvagqvliyPvt 110
                     +av d+ +a++w ++  +++g +p+ ++ +G SaGG  ++  + r++ + e   +   +++P+ 
     KKY16092.1 176 NTAVWDVSHAFEWTKKYISAFGGNPDDVTAVGFSAGGSQVLFQVTRFAGHAEQLFNKAYVMSPGF 240
                    579999999*******999******************8777666666666577788888888854 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.6   5.2e-05      0.15     331     387 ..     428     488 ..     354     547 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.2e-05
        Apt1 331 s.....ssssssassssssssrssslelrlk.ptsstssssssessssssskkrsseessles 387
                 +     +++s+s+sssss+ s+++s + +   p ss+sss+ss++s+ s+   +ss++ss++s
  KKY16092.1 428 TlssstTTTSTSNSSSSSFASGTTSASASGAaP-SSSSSSNSSSTSTGSTG-ASSSSSSSVNS 488
                 022112222222222222222222222222212.22222222222222222.22222223332 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   7.5   9.5e-05      0.28     305     365 ..     429     485 ..     361     519 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 9.5e-05
    Macoilin 305 gsesellveesvkskssssssssnknskkasagsagssnssskkhsessksvtssssskns 365
                  s+s+++++ s++s+ss +s     +++ +++g+a ss+sss++ s+s++s+  ssss++s
  KKY16092.1 429 LSSSTTTTSTSNSSSSSFAS----GTTSASASGAAPSSSSSSNSSSTSTGSTGASSSSSSS 485
                 12222222222222222222....2333333334444444444444444444444433333 PP

>> PAP1  Transcription factor PAP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  14.9     0.002         6      79     155 ..     404     480 ..     311     500 .. 0.45

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.002
        PAP1  79 knqrsnslealtkednnnysnsaanegltrgstassaesqsstysansgtsts.sdSPsssseshqgqlSScgTSPEP 155
                  n   +  ea++++d+++y  s+ +  ++   t++ ++s+ss++  ++ +++   + Pssss+s+++  S   T    
  KKY16092.1 404 WNAMVALDEATHGTDQSYYWYSTYTLSSSTTTTST-SNSSSSSFASGTTSASAsGAAPSSSSSSNSSSTSTGSTGASS 480
                 22122222333334444443222222222222222.222233333333222222445666666664432222222222 PP

>> RAP1  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  15.4    0.0034        10     130     190 ..     431     492 ..     384     525 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0034
        RAP1 130 ktskpkststeslksssdskskasaksnvksask.yGesssseesatdsskasasvagivGa 190
                  +++  sts +s  s + + ++asa  ++ s+s     ss s  s+  ss++s+sv + +  
  KKY16092.1 431 SSTTTTSTSNSSSSSFASGTTSASASGAAPSSSSsSNSSSTSTGSTGASSSSSSSVNSTIAI 492
                 22233333334444444455555555554444440445566777888888888888776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1027  (0.0572815); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 3602.64
//
Query:       KKY16093.1  [L=168]
Description: putative cytosine [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-22   77.3   0.1    9.4e-22   76.8   0.1    1.2  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    5.5e-20   71.5   0.1      8e-20   71.0   0.1    1.1  1  MafB19-deam      MafB19-like deaminase
    2.1e-05   24.7   0.2     0.0013   18.8   0.2    2.1  1  APOBEC2          APOBEC2
    2.5e-05   24.4   0.7      0.019   15.1   0.7    2.4  1  Bd3614-deam      Bd3614-like deaminase
    8.9e-05   22.6   0.2      0.035   14.2   0.0    2.1  2  NAD1             Novel AID APOBEC clade 1
     0.0003   20.7   0.2      0.044   13.7   0.0    2.1  2  APOBEC_N         APOBEC-like N-terminal domain
    0.00036   20.6   0.1     0.0044   17.1   0.1    2.2  2  SNAD4            Secreted Novel AID/APOBEC-like Deaminase 4
    0.00098   19.3   0.0      0.019   15.1   0.0    2.0  1  NAD2             Novel AID APOBEC clade 2
  ------ inclusion threshold ------
      0.028   14.4   0.0       0.47   10.4   0.0    2.1  1  APOBEC4_like     APOBEC4-like -AID/APOBEC-deaminase
       0.05   14.0   0.1        0.1   13.0   0.1    1.5  1  Lar_restr_allev  Restriction alleviation protein Lar
      0.075   13.2   0.1       0.51   10.5   0.1    2.0  1  APOBEC3          APOBEC3


Domain annotation for each model (and alignments):
>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.1   5.8e-25   9.4e-22      10     100 ..      25     116 ..      16     117 .. 0.94

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 5.8e-25
                      HHHHHHHHHHTTTSCSEEEEEEE.TTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHHTSSCETTEEEEEEE--BHHHHHHHHHHT-SEEEEE CS
  dCMP_cyt_deam_1  10 lalkaakeaqkcsnfkVGavivk.ngeiistgyngepaggsktiHAEvnAilkaaknggsklegatlyvtlePCsmCakaiiqsgikkvvvg 100
                       al++ak+  ++  +++Ga++v+ +g+i+++g+n++ ++gs t+HAE++ + + ++ +    egat+y+tl+PC mC+ a i  ++k+vvvg
       KKY16093.1  25 AALEEAKKGAEEGGVPIGACLVDkDGKILGRGHNMRVQKGSATLHAEISTLESSGRLPAKAYEGATMYTTLSPCDMCTGACILYKVKRVVVG 116
                      5788888888999********************************************877899***************************98 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.1   4.9e-23     8e-20       9     136 ..      25     153 ..      18     154 .. 0.84

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 4.9e-23
  MafB19-deam   9 kalaevekatkikedkigaviv.kdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaivqaglkklvygagnpk 105
                   al+e++k+++ ++++iga  v kd+k+++rg+n + ++ +at HaEi  l+     l +k  ++at+y+tl pCdmC ga +  ++k++v g + ++
   KKY16093.1  25 AALEEAKKGAEEGGVPIGACLVdKDGKILGRGHNMRVQKGSATLHAEISTLESS-GRLPAKAYEGATMYTTLSPCDMCTGACILYKVKRVVVGEN-KN 120
                  6899**************96666****************************998.7788888******************************998.44 PP

  MafB19-deam 106 slnkLkvkekngrvelv...eddckeilkgffkk 136
                  ++   + + k   v++v   +++ck+++k+f+k+
   KKY16093.1 121 FVG-GEDYLKKRGVDVVvmeNEECKALMKKFIKE 153
                  433.233344444444446689*********996 PP

>> APOBEC2  APOBEC2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.2   8.1e-07    0.0013      47     150 ..      65     155 ..      45     163 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 8.1e-07
     APOBEC2  47 ekkcHaEllflskvkkkkleekkeyk.vtwyvswsPCaeCaeevaeflakeknvkLtifaarlyfleeeeyqegLrsLkeagaqvkiMkykdfeecwek 144
                 +++ HaE+  l++       ++k y+  t+y++ sPC  C+      l k k         r++  e+++   g   Lk++g++v +M++++ +   +k
  KKY16093.1  65 SATLHAEISTLESSGR---LPAKAYEgATMYTTLSPCDMCTGACI--LYKVK---------RVVVGENKNFVGGEDYLKKRGVDVVVMENEECKALMKK 149
                 4667***999998877...466777648************99765..44433.........4445566777778889********************** PP

     APOBEC2 145 FVdnee 150
                 F++++ 
  KKY16093.1 150 FIKEHP 155
                 *99876 PP

>> Bd3614-deam  Bd3614-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.7   1.1e-05     0.019      59      96 ..      71     107 ..      36     126 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
  Bd3614-deam  59 eiadrdgdgeeerrpleegarllvtlqcCkmCAalvva 96 
                  ei+  + +g   ++   ega+++ tl +C mC +  + 
   KKY16093.1  71 EISTLESSGRLPAKA-YEGATMYTTLSPCDMCTGACIL 107
                  444444444444554.479*************987654 PP

>> NAD1  Novel AID APOBEC clade 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.1e-05     0.035      46      87 ..      65     103 ..      44     115 .. 0.69
   2 !    6.9   0.0    0.0037         6     122     149 ..     127     154 ..     107     163 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.1e-05
        NAD1  46 eskcHaEllflnkikslklldpsqkykvtwylswSPCseCas 87 
                 +++ HaE+  l+    l     ++    t+y++ SPC+ C+ 
  KKY16093.1  65 SATLHAEISTLESSGRL---PAKAYEGATMYTTLSPCDMCTG 103
                 4446***9987766443...44666679************64 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0037
        NAD1 122 sLasagvklsimkyeefeycwetfVene 149
                  L+++gv++ +m+ ee++ + ++f++++
  KKY16093.1 127 YLKKRGVDVVVMENEECKALMKKFIKEH 154
                 6999*********************976 PP

>> APOBEC_N  APOBEC-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.7e-05     0.044      35      88 ..      55     105 ..      42     114 .. 0.71
   2 !    5.4   0.1    0.0092        15     122     156 ..     119     153 ..     106     162 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.7e-05
                 EEE.EEEE-..SSTBCHHHHHHHHHHHH.T--.TTEEEEEEEEESS-S-HH....H CS
    APOBEC_N  35 kGv.LrnqsgaaaskHaEelflediedq.elrepkkkyeitlYvswsPChessdeC 88 
                 +G+ +r q+g+ a  HaE   le+      l+  k     t+Y+++sPC   +  C
  KKY16093.1  55 RGHnMRVQKGS-ATLHAEISTLES---SgRLP-AKAYEGATMYTTLSPCDMCTGAC 105
                 45556667776.589*****8885...33555.4556669*********9944445 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0092
                 HHHH..HHHHHHTTEEEEE--HHHHHHHHHHHB-- CS
    APOBEC_N 122 eaekeglrllkqagveleimkekdfkycwqnfvee 156
                 ++  +g   lk+ gv + +m+ ++ k + ++f++e
  KKY16093.1 119 KNFVGGEDYLKKRGVDVVVMENEECKALMKKFIKE 153
                 44556778899*********************943 PP

>> SNAD4  Secreted Novel AID/APOBEC-like Deaminase 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   2.7e-06    0.0044      18      59 ..      63     104 ..      46     149 .. 0.83
   2 ?   -0.7   0.0      0.93   1.5e+03      55      69 ..     142     156 ..     141     157 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.7e-06
       SNAD4  18 knkke.haEllflekikseldpsqeyrvtwylswsPCaeCaek 59 
                 k +++ haE+  le    +l ++     t+y++ sPC  C+ +
  KKY16093.1  63 KGSATlHAEISTLESS-GRLPAKAYEGATMYTTLSPCDMCTGA 104
                 223337********99.8899999999*************865 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.93
       SNAD4  55 eCaekiaeflaehpn 69 
                 eC + + +f++ehp+
  KKY16093.1 142 ECKALMKKFIKEHPE 156
                 799999******996 PP

>> NAD2  Novel AID APOBEC clade 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.1e-05     0.019      48      99 ..      61     111 ..      45     160 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
        NAD2  48 nqk.esklhaellfLskfvlrqlelaqeykvtwyvsWsPCpeCaaevaeflae 99 
                  qk ++ lhae++ L+     +l+++     t+y++ sPC  C++  + ++ +
  KKY16093.1  61 VQKgSATLHAEISTLESS--GRLPAKAYEGATMYTTLSPCDMCTGACILYKVK 111
                 33337899*******998..58999987789************9987766544 PP

>> APOBEC4_like  APOBEC4-like -AID/APOBEC-deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00029      0.47      31     130 ..      63     151 ..      49     153 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00029
  APOBEC4_like  31 eksklehaevnflekirserkkvsctivwylsispCaecskrlleflskkpnvkleiyvaklflhvdddnreglrkLkqngveiqvmsvkeycycwk 127
                   + s + hae+  le       k  +  ++y   spC  c ++ +      + vk       +  + ++++  g  +Lk+ gv++ vm+++e    +k
    KKY16093.1  63 KGSATLHAEISTLESSGRLPAKAYEGATMYTTLSPCDMCTGACIL-----YKVKR------VVVGENKNFVGGEDYLKKRGVDVVVMENEECKALMK 148
                   456678999999998877778999999999999999999999882.....33222......223445555556667888888888888888888888 PP

  APOBEC4_like 128 afk 130
                   +f+
    KKY16093.1 149 KFI 151
                   876 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   6.2e-05       0.1       2      43 ..      94     152 ..      93     162 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.2e-05
  Lar_restr_allev   2 eLkpCPfCggravlersqrvvaeigq...............cvyCad..Cgastpwfki 43 
                      +L pC+ C g+ +l + +rvv +  +               +v  ++  C+a  ++f  
       KKY16093.1  94 TLSPCDMCTGACILYKVKRVVVGENKnfvggedylkkrgvdVVVMENeeCKALMKKFIK 152
                      799******************97666999999999999999777766679994444444 PP

>> APOBEC3  APOBEC3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00031      0.51      29      73 ..      66     108 ..      48     157 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00031
     APOBEC3  29 ekkHAEerfidkirslnldslkqykitcylswsPcpkCaeelvef 73 
                 ++ HAE+  ++      l  + +   t+y + sPc  C+   + +
  KKY16093.1  66 ATLHAEISTLESSGR--LPAKAYEGATMYTTLSPCDMCTGACILY 108
                 567999988887665..666666689************9776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      700  (0.0390429); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1332.87
//
Query:       KKY16094.1  [L=356]
Description: putative uroporphyrinogen decarboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.5e-115  383.4   0.0   1.1e-114  383.2   0.0    1.0  1  URO-D     Uroporphyrinogen decarboxylase (URO-D)


Domain annotation for each model (and alignments):
>> URO-D  Uroporphyrinogen decarboxylase (URO-D)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  383.2   0.0  6.4e-119  1.1e-114      25     345 ..      25     353 ..      17     354 .. 0.95

  Alignments for each domain:
  == domain 1  score: 383.2 bits;  conditional E-value: 6.4e-119
                 -SSTTSHHHHHHHTSSSHHHHHH-HHHHHHHHHHHHHHH-..-S-EE-S--TTGGGGGGT-EEEEETTTEEEEE--S-......GGGS----GGG...G CS
       URO-D  25 qaGrylpeyraeragvsflelcknpelaaevtlqpvrrfg..lDaailfsdilveaealGlevefeegegPvvekpvrtaed..veklevpddvee..g 117
                  aGrylpey++ + g++f+e+c++pe a+ +tlqp++r+   +Daai+fsdilv+++a+G+eve+++++gP++++p+r+++d  ++++  +++  +  +
  KKY16094.1  25 KAGRYLPEYHEAKGGHDFFECCRSPEIASTLTLQPIERYAglIDAAIIFSDILVIPQAMGMEVEMVDKKGPSFPNPLRSPSDeqYKEIMGKHV--DvqK 121
                 69*************************************999************************************887722444433322..1348 PP

                 ..HHHHHHHHHHHHH.--SS-EEEEEE-HHHHHHHHHCTT.-SS-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETTGGGS-HHH CS
       URO-D 118 rlpyvleaikllkkelggevpligfvgaPftlasylveGg.skgfekllkllykdpeevhklldkltdvvieylkaqieagAdaiqifDswagllsped 215
                 +l+yv++ai+l++k+l+g+vpl+gf+gaP+tl++y+veGg +k f++++++ yk+ +e ++ll+k++++++eyl+ q+ agA++iq+fDswag lsp+ 
  KKY16094.1 122 ELQYVYDAITLTRKKLNGRVPLLGFCGAPWTLLCYMVEGGgTKIFKEAKSWVYKYTKESKALLQKISEICVEYLALQVVAGAQMIQVFDSWAGELSPSS 220
                 9************************************************************************************************** PP

                 HHHHTHHHHHHHHHHHHH.H-.....-S-EEEEESSHH.HHHHHHTTS--SEEE--TTS-HHHHHHSS....EEE--B-G.GGGGS-HHHHHHHHHHHH CS
       URO-D 216 feefvlpylkrivdevkaegp.....kvpvilfikgagaeiledlaelgadvlsldwtvdlkeaarevgdkvalqGnldPialLlgspeeiekevkeil 309
                 f+ ++lpyl+ i ++++ + +      vp+++f+kg++ + l++l+++g+dv++ldw +d++ea++  + +v+lqGn dP  +L+gs+e+i   v++++
  KKY16094.1 221 FKHIALPYLRYISKHLPTRLQelgqePVPMTVFAKGSW-YALDELCDSGYDVVGLDWLQDPAEAVKIANGRVTLQGNADP-GVLYGSREAISGVVEDMV 317
                 *******************999**999***********.9*********************99999999***********.9***************** PP

                 T.T---SSSEEB-BSS---TTS-HHHHHHHHHHHHT CS
       URO-D 310 ekgaggkkgyilnlGhgippetppenvkalveavke 345
                 ++  ggk+++i+nlGhgi+p ++p+ +k ++e +++
  KKY16094.1 318 DGFGGGKQRWIVNLGHGITPFVNPDDLKFFFEEIHR 353
                 *88899***************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.53
# Mc/sec: 2037.71
//
Query:       KKY16095.1  [L=563]
Description: putative trna methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   13.3   0.0      0.062   12.6   0.0    1.2  1  Lactonase  Lactonase, 7-bladed beta-propeller
      0.066   12.5   0.0       0.14   11.4   0.0    1.5  2  CPSF_A     CPSF A subunit region


Domain annotation for each model (and alignments):
>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.9e-06     0.062      18     103 ..      63     145 ..      54     165 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.9e-06
                 EEEETTTS-EEEEEE.EEESS---SEEE-TTSSEEEEEET.STTTEEEEEEEETTTTEEEEEEEEE.SSS-EEEEEE-TTSSEEEEE CS
   Lactonase  18 lkldtetgkltplel.vaelenPsyLalspdgktlYavnetgeeggvsafaidkdsgeltllnkvssegaspchlsvdedgkllavA 103
                  kl++e+g+ +p +        +s L+ s+dg+++ a++   ++  v  f +++d g+l++l++    ++ pc l++ +d++ ++v 
  KKY16095.1  63 EKLQREKGQQKPRKGtQGPAPYVSHLTASKDGNHVIAITS--DDKCVRVFMLHDD-GKLHELSQRC-MPKRPCALALTPDERTILVG 145
                 56778888888887756678899***************88..6889999999988.9*****9887.9**************99986 PP

>> CPSF_A  CPSF A subunit region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.6e-05      0.14     161     208 ..     114     160 ..      83     219 .. 0.81
   2 ?   -3.6   0.0      0.57   5.1e+03     185     203 ..     236     254 ..     232     259 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.6e-05
                 SS--EEEEEEESS---EEEEEEE--SSSEEEEEETTSEEEEEE--TTS CS
      CPSF_A 161 enyklilfardtqkrwvtaaeflvdgedtvlvaDkfgnlfvlrydpea 208
                 ++ kl+++++ ++++  +a+++ +d+ +t+lv+Dkfg +  l + p a
  KKY16095.1 114 DDGKLHELSQRCMPKRPCALALTPDE-RTILVGDKFGDVYALPLHPGA 160
                 4455*******************999.9***********999887755 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.57
                 -SSS.EEEEEETTSEEEEEE CS
      CPSF_A 185 dged.tvlvaDkfgnlfvlr 203
                 d+ + ++l +D+++++ v r
  KKY16095.1 236 DD-RgYILTSDRDEHIRVSR 254
                 55.5599999**99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3817.42
//
Query:       KKY16096.1  [L=314]
Description: putative 60s acidic ribosomal protein p0 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-24   85.1   0.7    5.5e-24   84.2   0.2    1.7  2  Ribosomal_L10  Ribosomal protein L10
    1.5e-22   79.4   0.0    3.7e-22   78.1   0.0    1.7  1  RL10P_insert   Insertion domain in 60S ribosomal protein L10P
    5.8e-17   62.1   9.2    6.6e-17   61.9   7.5    2.0  2  Ribosomal_60s  60s Acidic ribosomal protein
  ------ inclusion threshold ------
      0.064   13.4   0.1        0.2   11.8   0.0    1.8  2  VirE_N         VirE N-terminal domain
       0.12   11.2   0.5        8.2    5.1   0.0    2.2  2  YukC           WXG100 protein secretion system (Wss), protein
        1.2    8.9   6.0         25    4.6   0.0    3.3  4  Pox_Ag35       Pox virus Ag35 surface protein


Domain annotation for each model (and alignments):
>> Ribosomal_L10  Ribosomal protein L10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   0.2   1.8e-27   5.5e-24       3      98 ..       5     103 ..       3     104 .. 0.91
   2 ?   -2.9   0.0       2.6   7.8e+03      61      82 ..     250     274 ..     242     283 .. 0.60

  Alignments for each domain:
  == domain 1  score: 84.2 bits;  conditional E-value: 1.8e-27
                    CCCHCCCCCCCCCCCTTSSEEEEEE-TTS-HHHHHHCCCHHHHHGCEEEEESCCCCCCCCHCCTSS.S....SCGCCSSSEEEEEESS-TCHHHHC CS
  Ribosomal_L10   3 kekKeelvkelkellkkyksvvvvdyegltvaqlqelRkklrengaelkvvKntlmrrAleetgeeek....lkellkgpvalvftnedpvalakv 94 
                     + K+ ++++lk ll++yks+++v++++++++q++e+Rk+lre+ a + ++Knt++rrA+++   e      l +++kg+v+++ftn+d +++ ++
     KKY16096.1   5 SATKAGYFDKLKALLQEYKSIFIVTVDNVSSQQMHEIRKALREE-AVVLMGKNTMVRRAIKGFISEFPeyerLLPHVKGNVGFIFTNGDLKDIREK 99 
                    678999*************************************9.*****************7775223567********************9988 PP

                    CCCC CS
  Ribosomal_L10  95 leef 98 
                    + ++
     KKY16096.1 100 ILSN 103
                    8665 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.6
                    CCHCCTSS.S...SCGCCSSSEEEE CS
  Ribosomal_L10  61 Aleetgeeek...lkellkgpvalv 82 
                    A+e+   +e    lk+ +++p a++
     KKY16096.1 250 AIETEYSWEGideLKDRIANPEAYA 274
                    4444443332455778888777776 PP

>> RL10P_insert  Insertion domain in 60S ribosomal protein L10P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.0   1.2e-25   3.7e-22       1      71 []     109     178 ..     109     178 .. 0.99

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 1.2e-25
  RL10P_insert   1 AraGtiAtedviipagplelaPgsiepeLrklglptklkkGkivleedylvckkGetltseqaqlLklLgi 71 
                   AraG++A++d+++pag+++++Pg++ +++++lg+ptk+ +G+i++++d ++++ G+++++++a+lL++L+i
    KKY16096.1 109 ARAGAVAPNDIFVPAGNTGMEPGKT-SFFQALGVPTKIARGTIEITTDLKIVERGNKVGASEATLLNMLNI 178
                   9************************.*******************************************98 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         2   6.1e+03      38      57 ..      96     113 ..      88     118 .. 0.39
   2 !   61.9   7.5   2.2e-20   6.6e-17       1      88 []     229     313 ..     229     313 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2
                    XXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  38 llangaaklaaaaaaaaaaa 57 
                    + +++ ++   + a a a+a
     KKY16096.1  96 IREKILSN--KVRAPARAGA 113
                    33333333..2222222222 PP

  == domain 2  score: 61.9 bits;  conditional E-value: 2.2e-20
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX--SS--..STTT CS
  Ribosomal_60s   1 eptaenikkvlkaagveveaarvkllvkalegkdieellangaaklaaaaaaaaaaaaaaaaaaaaeekkkeeeeeEeedddmG..fgLF 88 
                    +pt  ++ ++l + ++++ a+++++++++    ++++ +an++a+   aaaa+aaaa+++a a+a+++k++e+e  Eeed d+G  +gLF
     KKY16096.1 229 YPTLPSVMHSLVNTYKKAIAVAIETEYSWEGIDELKDRIANPEAY---AAAAPAAAATESADAPAEAAKEEEKE--EEEDSDEGgfGGLF 313
                    5999**************************************988...44555555555555555555555555..46666666656888 PP

>> VirE_N  VirE N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.5e-05       0.2      19      59 ..      14      53 ..       5      68 .. 0.84
   2 ?   -1.9   0.0       1.1   3.4e+03      76     103 ..     226     252 ..     220     256 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.5e-05
      VirE_N 19 rkekklkkynglvvlDidhlaskeeaeelrrllkedpqtll 59
                + ++ l++y  ++++ +d+++s +++ e+r+ l+e   +l+
  KKY16096.1 14 KLKALLQEYKSIFIVTVDNVSS-QQMHEIRKALREEAVVLM 53
                5677899**************9.***********9988877 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.1
      VirE_N  76 erpdgeelpkaeeevelfyakayrlavk 103
                 ++++++ lp+ +  +  +y+ka++ a +
  KKY16096.1 226 ATNYPT-LPSVMHSLVNTYKKAIAVAIE 252
                 556666.888888999999998888765 PP

>> YukC  WXG100 protein secretion system (Wss), protein YukC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0028       8.2      48     129 ..      11      89 ..       4      94 .. 0.86
   2 ?    4.4   0.1    0.0046        14     113     176 ..     236     299 ..     202     305 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0028
                 EGGGGGGS-HHHHHHHHHHGGGGGGGGGSSEE---SGGGEEE-TTS-EEES--EETTTBS-----HHHHHHHHHHHHHHHH- CS
        YukC  48 sfeeikkkekkeklrlalnikaleellssrltlilhPeNlvfdknlepkilhrgvkeslppyeldeeellkeykalilalld 129
                  f+++k+  +++k ++   +++++  + +++   l +e +v+    + +++ r +k  + + + + e+ll  +k  + ++++
  KKY16096.1  11 YFDKLKALLQEYKSIFIVTVDNVSSQQMHEIRKALREEAVVL--MGKNTMVRRAIKGFISEFP-EYERLLPHVKGNVGFIFT 89 
                 599*************************************99..5566778999999888876.678999999999999987 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0046
                 HHHHHHHHHHHHHHHH-TT--HHHHHHS-GGG----HHHHHHHH--SHHHHHHHHHHT-XXXXX CS
        YukC 113 eeellkeykalilalldkkysFeelyegsltlaklseflkkileaktleelkalleeeiqeeee 176
                    l++ yk +i+++++ +ys+e   e ++ +a+ ++ +    +a+ +e  +a  e + +ee+e
  KKY16096.1 236 MHSLVNTYKKAIAVAIETEYSWEGIDELKDRIANPEAYAAAAPAAAATESADAPAEAAKEEEKE 299
                 56899******************99999999966555555555555555444444443333333 PP

>> Pox_Ag35  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.14   4.2e+02      14      29 ..      34      49 ..      25      58 .. 0.80
   2 ?    4.6   0.0    0.0084        25      18      49 ..      93     124 ..      85     135 .. 0.90
   3 ?   -3.3   0.1       2.2   6.5e+03     139     152 ..     210     223 ..     204     228 .. 0.75
   4 ?    2.5   2.4     0.037   1.1e+02      64      90 ..     280     306 ..     261     308 .. 0.64

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.14
    Pox_Ag35 14 sfktleeiRahlrsea 29
                s +++ eiR+ lr ea
  KKY16096.1 34 SSQQMHEIRKALREEA 49
                3599*********998 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0084
    Pox_Ag35  18 leeiRahlrseaedadkkeddifpeDieiPsp 49 
                 l++iR+++ s+   a++ +  + p+Di +P+ 
  KKY16096.1  93 LKDIREKILSNKVRAPARAGAVAPNDIFVPAG 124
                 89**************************9964 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.2
    Pox_Ag35 139 lkkltarvsAvstv 152
                 lk+lt+ +  v+t+
  KKY16096.1 210 LKALTSAIATVTTI 223
                 67777777777776 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.037
    Pox_Ag35  64 pakkekkkkeeekeeaaeeeeledsee 90 
                 +a  e++++++e  +++e+ee eds+e
  KKY16096.1 280 AAATESADAPAEAAKEEEKEEEEDSDE 306
                 455666777777777777776677665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1100  (0.0613531); expected 358.6 (0.02)
Passed bias filter:                      837  (0.0466841); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 1980.63
//
Query:       KKY16097.1  [L=122]
Description: hypothetical protein UCRPC4_g06008 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00081   19.1   2.5    0.00093   18.9   2.5    1.1  1  Yip1           Yip1 domain
     0.0019   18.1   0.5      0.004   17.1   0.5    1.5  1  UL2            UL2 protein
  ------ inclusion threshold ------
      0.047   13.9   0.0      0.088   13.1   0.0    1.4  1  Glycophorin_A  Glycophorin A
      0.048   13.0   2.6      0.061   12.6   2.6    1.2  1  Far-17a_AIG1   FAR-17a/AIG1-like protein
       0.05   13.2   0.1      0.063   12.9   0.1    1.2  1  Saf_2TM        SAVED-fused 2TM effector domain
      0.059   13.5   0.1      0.079   13.1   0.1    1.1  1  DHHC           DHHC palmitoyltransferase
       0.16   12.2   0.9        1.3    9.2   0.0    2.0  2  DUF4381        Domain of unknown function (DUF4381)
       0.19   11.0   0.2       0.24   10.7   0.2    1.1  1  DUF3810        Protein of unknown function (DUF3810)
       0.28   11.4   2.3          2    8.6   0.2    2.1  2  HemY_N         HemY protein N-terminus
        0.3   11.0   0.2        0.3   11.0   0.2    2.0  2  Syndecan       Syndecan domain
        0.5   10.1   6.6       0.24   11.1   1.6    2.0  2  FtsK_4TM       4TM region of DNA translocase FtsK/SpoIIIE
       0.59    9.8   2.5        1.5    8.6   0.0    2.6  3  BRCA2          BRCA2 repeat


Domain annotation for each model (and alignments):
>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   2.5   6.3e-07   0.00093      23      94 ..      29     101 ..      18     110 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 6.3e-07
        Yip1  23 dlallllalltlllgllaslnlgqtlasgeevqgltlssllgaiiggylglllgllllalllhliakllg.gk 94 
                  la+l+++ll +l +++++++ +++ + +   ++++++ ++g+++g+++++++++l++ +l++l  k+ g gk
  KKY16097.1  29 HLAGLVILLLLYLALAYLTNATEGFYPYSFLDPSTGSGKVAGYCFGILAAIIVIFLIVWGLIWLRRKFTGlGK 101
                 344555555555555555544444444446667899999************************9666666655 PP

>> UL2  UL2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.5   2.7e-06     0.004      27      52 ..      68      93 ..      57      96 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.7e-06
         UL2 27 haqyGfrllrsiflimlviwtavwlk 52
                 a y f +l +i +i l++w  +wl+
  KKY16097.1 68 VAGYCFGILAAIIVIFLIVWGLIWLR 93
                589*********************96 PP

>> Glycophorin_A  Glycophorin A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.9e-05     0.088      60     103 ..      68     117 ..      62     121 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.9e-05
                    HHHHHHHHHHHHHHHHHHHHHH.H..HT....HSXXXXXXXXXXXXXXXXX CS
  Glycophorin_A  60 itliifgvmAgvigtillisYl.i..rR....liKKssvdvkplespDedv 103
                    +++  fg++A++i + +li +  i  rR    l KKs+ d+ + ++pD ++
     KKY16097.1  68 VAGYCFGILAAIIVI-FLIVWGlIwlRRkftgLGKKSKRDLTSAPPPDVEM 117
                    67788******9975.5555541444555555779*************876 PP

>> Far-17a_AIG1  FAR-17a/AIG1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.6   4.1e-05     0.061     114     196 ..       3      84 ..       1      95 [. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.1e-05
  Far-17a_AIG1 114 hsmHtvvlvailleifllkhkypsrlaalalsaafallYliwiervaqfngvwvYPvlealslegrvlffalsavvmallyll 196
                   +s+H+++  ++l ei++   ++p  l  la+++++ llYl+    +  ++g+++Y +l+  +  g+v  + + ++ +++++ l
    KKY16097.1   3 VSQHALNSAYALFEIVFPATNPPPFL-HLAGLVILLLLYLALAYLTNATEGFYPYSFLDPSTGSGKVAGYCFGILAAIIVIFL 84 
                   57899999999999999999888655.466668899************************99999998776655555544443 PP

>> Saf_2TM  SAVED-fused 2TM effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   4.2e-05     0.063      19      91 ..      22      97 ..       5     107 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-05
     Saf_2TM 19 rsaelllftigvalllailgtdwalkialklaggslevsf.....ssse.ipeivlaiilvigvllivvGavllilryv 91
                +++  +l   g ++ll ++    al+++++  +g+   sf     +s +     + +++ +i ++liv+G+++l + + 
  KKY16097.1 22 TNPPPFLHLAGLVILLLLYL---ALAYLTNATEGFYPYSFldpstGSGKvAGYCFGILAAIIVIFLIVWGLIWLRRKFT 97
                55555555555555555544...5666666666666666522211444422334566677889999*****99977764 PP

>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   5.3e-05     0.079      54     126 ..      27      97 ..      25     105 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.3e-05
        DHHC  54 fllylllllilalvlllialvklveeekkseflavtllkkllsilllvlsllfllllgllllfhlylilrnlT 126
                 fl    l+++l l+l+l +l++ +e  +  +fl  ++ +  +++  +++ +l+++++++l++  l+ ++r++T
  KKY16097.1  27 FLHLAGLVILLLLYLALAYLTNATEGFYPYSFLDPSTGS--GKVAGYCFGILAAIIVIFLIVWGLIWLRRKFT 97 
                 788999************************999888876..78888888888888888888888887777777 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.3       0.2     3e+02      25      40 ..      30      45 ..      14      51 .. 0.55
   2 ?    9.2   0.0   0.00089       1.3      23      56 ..      75     108 ..      69     120 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.2
     DUF4381 25 laalllllllvlalwl 40
                la+l++llll+lal +
  KKY16097.1 30 LAGLVILLLLYLALAY 45
                2244444555555444 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00089
     DUF4381  23 lllaalllllllvlalwllrrrkrnrreAlreLa 56 
                 +l+a+++++l+++ ++wl+r+ +   ++  r L+
  KKY16097.1  75 ILAAIIVIFLIVWGLIWLRRKFTGLGKKSKRDLT 108
                 4554455566666667777765555666666665 PP

>> DUF3810  Protein of unknown function (DUF3810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00016      0.24      27      89 ..      33      98 ..      25     110 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
     DUF3810 27 llivllillvilylvlai...klkkrkkkkkrllkvllrvllvllvvyflftllwglnYyreplse 89
                l+i+ll+ l+++yl  a    +  +  + ++   kv +  + +l++++++f+++wgl   r +++ 
  KKY16097.1 33 LVILLLLYLALAYLTNATegfYPYSFLDPSTGSGKVAGYCFGILAAIIVIFLIVWGLIWLRRKFTG 98
                3344444444444444447773333445556677899999******************99999875 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2     0.096   1.4e+02      25      41 ..      31      47 ..      25      57 .. 0.50
   2 ?    8.6   0.2    0.0013         2      19      49 ..      75     105 ..      71     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.096
      HemY_N 25 llfvllylllrllrlll 41
                +++v+l+ll+ +l+ l 
  KKY16097.1 31 AGLVILLLLYLALAYLT 47
                33333333333333333 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0013
      HemY_N  19 avlllvllfvllylllrllrlllrlparvrr 49 
                  +++++++f++++ l++l r++ +l ++++r
  KKY16097.1  75 ILAAIIVIFLIVWGLIWLRRKFTGLGKKSKR 105
                 578999**************99999887765 PP

>> Syndecan  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.3       0.7   1.1e+03      20      27 ..      33      40 ..      28      54 .. 0.57
   2 ?   11.0   0.2    0.0002       0.3      13      34 ..      68      89 ..      60      96 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.7
    Syndecan 20 llfaillv 27
                l+++ ll 
  KKY16097.1 33 LVILLLLY 40
                22222222 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0002
    Syndecan 13 iggvvvgllfaillvlflvYRm 34
                ++g + g+l ai+++ ++v+ +
  KKY16097.1 68 VAGYCFGILAAIIVIFLIVWGL 89
                89*****************975 PP

>> FtsK_4TM  4TM region of DNA translocase FtsK/SpoIIIE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.3     0.083   1.2e+02      88     110 ..      25      47 ..       7      70 .. 0.64
   2 ?   11.1   1.6   0.00016      0.24      60      84 ..      71      95 ..      65     110 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.083
    FtsK_4TM  88 rrllrllgalllllasaalfalr 110
                 ++ l+l+g+++lll   al+ l+
  KKY16097.1  25 PPFLHLAGLVILLLLYLALAYLT 47 
                 55555556665555555555443 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00016
    FtsK_4TM 60 slfGlsawllvvlllawglrllrrk 84
                + fG+ a+++v++l++wgl +lrrk
  KKY16097.1 71 YCFGILAAIIVIFLIVWGLIWLRRK 95
                89*********************95 PP

>> BRCA2  BRCA2 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00098       1.5      16      29 ..       2      15 ..       1      16 [. 0.92
   2 ?   -0.3   0.5       0.6     9e+02       8      13 ..      62      67 ..      62      67 .. 0.92
   3 ?   -1.9   0.2       1.9   2.8e+03       9      14 ..      97     102 ..      97     102 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00098
       BRCA2 16 rVSkesLqKAkklF 29
                +VS+++L+ A  lF
  KKY16097.1  2 CVSQHALNSAYALF 15
                9************9 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.6
       BRCA2  8 kTAsGK 13
                +T+sGK
  KKY16097.1 62 STGSGK 67
                7****9 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.9
       BRCA2   9 TAsGKk 14 
                 T+ GKk
  KKY16097.1  97 TGLGKK 102
                 9****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       878  (0.0489709); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.56u 0.34s 00:00:00.90 Elapsed: 00:00:00.56
# Mc/sec: 653.97
//
Query:       KKY16098.1  [L=183]
Description: putative cell cycle inhibitor nif1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-13   50.9   9.9    0.00031   21.3   1.8    3.3  3  Sel1            Sel1 repeat
  ------ inclusion threshold ------
       0.26   11.6   1.8        3.4    8.0   1.5    2.3  2  Ribosomal_L32p  Ribosomal L32p protein family


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.2   7.1e-06     0.063       5      34 ..       4      29 ..       1      32 [. 0.89
   2 !   19.9   0.0   9.7e-08   0.00087       2      33 ..      63      92 ..      62      94 .. 0.93
   3 !   21.3   1.8   3.4e-08   0.00031       1      37 [.      98     132 ..      98     133 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.1e-06
        Sel1  5 yrLGmfylylnGlgvpkDpekAiewyekAA 34
                y+L+  +   +G g  ++++++++w++kA 
  KKY16098.1  4 YALA--C--RHGWGMRANQREGVQWLRKAV 29
                8888..8..99999***************6 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 9.7e-08
        Sel1  2 eAmyrLGmfylylnGlgvpkDpekAiewyekA 33
                 A y LG    +lnG g+++D+ +A++++e A
  KKY16098.1 63 LAIYELG--VSHLNGWGIDQDRALALRCFEIA 92
                699****..999******************88 PP

  == domain 3  score: 21.3 bits;  conditional E-value: 3.4e-08
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqG 37 
                 ++A++  G   +y +G g +kD  kA ++y++AA++G
  KKY16098.1  98 PDALAEAG--FCYAEGIGCKKDLMKAARFYRMAAAKG 132
                 6799999*..999**********************98 PP

>> Ribosomal_L32p  Ribosomal L32p protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.048   4.3e+02      11      23 ..      53      65 ..      51      71 .. 0.82
   2 ?    8.0   1.5   0.00038       3.4       3      15 ..     163     175 ..     161     179 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.048
                    HHHHHGGGT---- CS
  Ribosomal_L32p 11 rrrkRrahwklka 23
                     r+ Rra+ +l  
      KKY16098.1 53 ERKTRRAQFALAI 65
                    5899****99975 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00038
                     -SS---HHHHHHH CS
  Ribosomal_L32p   3 PKrKtSksrrrkR 15 
                     P +K Sksr+r+R
      KKY16098.1 163 PEKKRSKSRTRSR 175
                     99**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.34s 00:00:00.87 Elapsed: 00:00:00.53
# Mc/sec: 1031.25
//
Query:       KKY16099.1  [L=342]
Description: hypothetical protein UCRPC4_g06010 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-27   96.3   3.3    1.6e-27   96.3   3.3    2.1  3  DUF3712   Protein of unknown function (DUF3712)


Domain annotation for each model (and alignments):
>> DUF3712  Protein of unknown function (DUF3712)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.27   4.9e+03      96     108 ..      88     100 ..      66     106 .. 0.53
   2 !   96.3   3.3   8.6e-32   1.6e-27       1     125 []     124     247 ..     124     247 .. 0.98
   3 ?   -2.8   0.0      0.41   7.3e+03      69      94 ..     267     293 ..     260     303 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.27
     DUF3712  96 pedginllatvtl 108
                 ++d + +++t+++
  KKY16099.1  88 TSDSFDINVTTKI 100
                 2333444444444 PP

  == domain 2  score: 96.3 bits;  conditional E-value: 8.6e-32
     DUF3712   1 kpfakvplpeikikgnsttglvdqtlditdvdaftkflealvlseefklsvkGkttlklgglkfkgvtldKtvtlkGlnslkgfsiedlqlllpdpedg 99 
                 +pf+++p+p +k+ +n++ ++++ +  i++  aft++++a+v++e++++ +kGkt+l+ g+l++ +v+++ t+t+ G+n+l+g+++++++ll+++++dg
  KKY16099.1 124 TPFTTLPIPAVKA-NNGALEHISTHSIINNSVAFTEYVTAVVKQENVTIHLKGKTHLRQGALPKIKVNYKQTLTFAGFNGLEGLTVTNISLLSGTQADG 221
                 689**********.899*********************************************9999********************************* PP

     DUF3712 100 inllatvtlpNpsvvtielGnvtldl 125
                 +n+ +tv++pNp+v+  elGn+t++l
  KKY16099.1 222 ANMAGTVNIPNPTVLIQELGNLTMQL 247
                 ***********************986 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.41
     DUF3712  69 ldKtvtlkGlnslk.gfsiedlqlllp 94 
                 ++ tv  +G ns+    +++ l ll+ 
  KKY16099.1 267 VNNTVLYPGTNSFPlRSTVNTLYLLGL 293
                 566777778888887777777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 2231.10
//
Query:       KKY16100.1  [L=298]
Description: putative zinc [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-66  222.4   0.2    7.4e-66  221.9   0.2    1.2  1  WLM        WLM domain
  ------ inclusion threshold ------
      0.035   14.2   2.5      0.035   14.2   2.5    1.8  2  DUF45      Protein of unknown function DUF45
      0.094   12.6   0.2       0.21   11.4   0.2    1.6  1  SprT-like  SprT-like family
       0.13   12.6   0.1       0.27   11.5   0.1    1.6  1  Ntox16     Novel toxin 16


Domain annotation for each model (and alignments):
>> WLM  WLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.9   0.2   1.7e-69   7.4e-66       3     190 ..       9     195 ..       7     196 .. 0.96

  Alignments for each domain:
  == domain 1  score: 221.9 bits;  conditional E-value: 1.7e-69
         WLM   3 iseikvlkkkpekeaalellkriakdvqpimkkhkfkVglLtElaPkeanlLGlNvnkGekieLrLRtdkddkeflpyesimgtllHELaHnvygpHda 101
                 + e+++ +++p++++al++l++ia+ v+pim+++++ Vg+L+E++P e nlLGlN+n+G+ki+LrLR + d+++flp+e++ +t+lHEL+Hnv+gpH++
  KKY16100.1   9 VREFQHENHRPRQAEALQILRKIASLVKPIMRQRNWYVGTLCEFYPPETNLLGLNINRGQKICLRLRYPGDQNQFLPVEQVTDTMLHELCHNVHGPHNE 107
                 67889999******************************************************************************************* PP

         WLM 102 kFyallkeLekeveelkakGlk.egflkeGkrlggkevrnksa.eeeeekealekagiagkgarlGgrseektrskasareliaaAaerRl 190
                 +F+al+++L++e+e+l  kG++ egfl+eGkrlgg+ +  ++a ++++e+++++k   ag+g++lGgr+     ++ ++r++ia+Aa+rR+
  KKY16100.1 108 QFHALWNQLRDEHESLIRKGYTgEGFLSEGKRLGGSRIPMHEArRRAREAAERRKVLTAGSGQKLGGRAV---LRGTDIRQVIADAAQRRI 195
                 **************************************98877577778888889999***********9...89***************8 PP

>> DUF45  Protein of unknown function DUF45
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   2.5   7.7e-06     0.035     170     198 ..      93     121 ..      84     126 .. 0.88
   2 ?   -1.8   0.1      0.59   2.6e+03      83      94 ..     216     227 ..     154     252 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.7e-06
       DUF45 170 vvHElaHlleknHskrFwalvekllPdwk 198
                 ++HEl+H ++  H+++F al ++l ++ +
  KKY16100.1  93 MLHELCHNVHGPHNEQFHALWNQLRDEHE 121
                 68******************999988766 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.59
       DUF45  83 kreelelavkke 94 
                 +++++ +++k+e
  KKY16100.1 216 EENYNGFKTKAE 227
                 222222222222 PP

>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   4.7e-05      0.21      60     102 ..      85     119 ..      64     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.7e-05
   SprT-like  60 sedrllntLaHElcHlalfvisgvrnnpHGaeFkawaakveka 102
                 + +++ +t++HElcH +     g    pH+++F+a+ +++ + 
  KKY16100.1  85 PVEQVTDTMLHELCHNVH----G----PHNEQFHALWNQLRDE 119
                 568899*********765....5....8999999988887665 PP

>> Ntox16  Novel toxin 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1     6e-05      0.27      42      78 ..     184     222 ..     149     226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6e-05
      Ntox16  42 iakirkcidaRikidrkCfkggDagHn..tqvqqalnii 78 
                  ++i + ++ Ri i+r C  g D+g +   +v++ +n+ 
  KKY16100.1 184 RQVIADAAQRRITIERGCASGTDTGRKiaREVEENYNGF 222
                 467888999****************97445788887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2037.73
//
Query:       KKY16101.1  [L=549]
Description: hypothetical protein UCRPC4_g06012 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-55  186.8   0.0    8.9e-55  186.1   0.0    1.3  1  DUF1776    Fungal family of unknown function (DUF1776)
     0.0096   15.4   0.0       0.02   14.3   0.0    1.5  1  adh_short  short chain dehydrogenase
  ------ inclusion threshold ------
      0.098   13.0   0.3       0.54   10.6   0.1    2.0  2  PH_9       Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.1   0.0   1.5e-58   8.9e-55       1     295 [.     134     487 ..     134     488 .. 0.85

  Alignments for each domain:
  == domain 1  score: 186.1 bits;  conditional E-value: 1.5e-58
     DUF1776   1 arkdvvlvlGsptePltRsialDLerrGFiVfvtvesaeeeklvesed..redIrplsvdd......dpssieasleefaqslesphvalpg...akph 88 
                 a+k+vv+++  +++Pl+Rs+a DLerrG+i+++tv+s++e+ lv      r+dIrpl++d        ++ i+ +l+ ++  +++p+va ++   ++++
  KKY16101.1 134 AKKEVVVLASTIHDPLARSLAFDLERRGYIIYITVSSQAEYDLVARGSdaRPDIRPLWMDLtssvpnPEKDIHPALTPIHDLIAKPQVARSNgipSQQY 232
                 689***************************************99754336**********99999977789*******************99555589* PP

     DUF1776  89 vlrLkgvilvPslsyptgpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelr. 186
                 ++ L+g+il+P  +y   p+  +p + + + +n+rllsp+l++q++lpll + +++ + iiv +psi  sl +p + + +   sals+++++L+ e++ 
  KKY16101.1 233 MCSLAGLILMPATDYIKAPLLSVPAHDLIDIVNTRLLSPMLLTQQFLPLLSN-LTHPTSIIVAYPSIPDSLTPPLQVTASAATSALSSFTQSLRSEIQl 330
                 ***************************************************6.77******************************************99 PP

     DUF1776 187 .....phnidvtqikLGnldlan..................gsqsnskiasvagse.......vlsWsesaralygpnyvsilskai..saksir...r 250
                      ++ i+vt++kLGn+dl+                   +                       +  + ++al +   +++ ++a   + +++    r
  KKY16101.1 331 lqpphSQPIQVTELKLGNIDLGTtpsfskaqnardlealsrS-------------AsssppprGSPNAAPQQALTWHWHSTQRAQALrrTFGQTTtsvR 416
                 99976678*************999999877655544333321.............1122343333444455555555555444443311233333568* PP

     DUF1776 251 gsslreLhnalfdllegss.........................kkrvvyvGkgarlyslvgk.llpeglv 295
                 gs++r++hna+fd l++ +                         +++vvy+G+garly+ +++ ++p++lv
  KKY16101.1 417 GSPVRTFHNAVFDTLYAGRslkpasthtwpqwllglafritddgPGGVVYAGRGARLYDYLSRnVHPRSLV 487
                 ***************987789***************************************98626788887 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.4e-06      0.02      91     186 ..     250     353 ..     233     362 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.4e-06
                 SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH..HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGT......EEEEEEEESS CS
   adh_short  91 gpfselseeewervievNltgvflltravlpaml..kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptg......irvnavaPGl 181
                 +p  ++ + +  +++++ l +++llt+++lp +    +    Iv   S+      + ++  sA+  a+ ++t+sl+ e++  +      i+v+ +  G 
  KKY16101.1 250 APLLSVPAHDLIDIVNTRLLSPMLLTQQFLPLLSnlTHPTSIIVAYPSIPDSLTPPLQVTASAATSALSSFTQSLRSEIQLLQpphsqpIQVTELKLGN 348
                 56666777788899******************99989999999********99*************************985554555788888888888 PP

                 BSSHH CS
   adh_short 182 vdTdm 186
                 +d ++
  KKY16101.1 349 IDLGT 353
                 87554 PP

>> PH_9  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.24   1.5e+03     105     116 ..      53      64 ..      49      65 .. 0.87
   2 ?   10.6   0.1     9e-05      0.54      21      99 ..      94     176 ..      83     184 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.24
        PH_9 105 kevqeWvdtiNy 116
                  ev++W d+iN+
  KKY16101.1  53 TEVKQWTDKINT 64 
                 699********6 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 9e-05
        PH_9  21 lkkrgWkevyavlkklvLylykdeeesesaetedlkslknak...llgkirlhhaLaek.asdYkkkshvFrLqtadgaeylf 99 
                   +r++  v +   ++ L l+ +++++e+ + + ++++  ak   ++   ++h  La + a d++++ ++  ++ +++aey +
  KKY16101.1  94 SEHRVLVAVTVAFTGTTLLLIHNKRKNERRKRRAKRTVTGAKkevVVLASTIHDPLARSlAFDLERRGYIIYITVSSQAEYDL 176
                 568888888888889999998887777766666666655554111455669*****************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.50
# Mc/sec: 3330.73
//
Query:       KKY16102.1  [L=1528]
Description: putative fad binding domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-26   90.9   1.1    2.4e-18   66.4   0.0    2.5  2  RPN7            26S proteasome subunit RPN7
    8.7e-20   71.2   0.0    2.7e-19   69.6   0.0    1.9  1  FAD_binding_3   FAD binding domain
    3.4e-16   59.1   1.2    1.3e-15   57.2   1.2    2.0  1  Fungal_trans    Fungal specific transcription factor domain
      2e-12   47.5   0.2    8.6e-12   45.5   0.2    2.2  1  PCI             PCI domain
    3.2e-10   40.1   1.1    0.00015   21.5   0.7    2.5  2  DAO             FAD dependent oxidoreductase
      3e-06   26.2   0.4    9.9e-06   24.5   0.4    1.9  1  HI0933_like     HI0933-like protein
    8.2e-06   25.3   2.1     0.0044   16.3   0.8    3.4  4  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    1.3e-05   24.5   6.6      7e-05   22.1   4.8    2.7  3  FAD_binding_2   FAD binding domain
    0.00022   21.4   0.5    0.00068   19.8   0.5    1.9  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0035   16.8   0.0     0.0065   15.9   0.0    1.5  1  FAD_oxidored    FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.012   14.5   4.5      0.054   12.3   1.2    2.2  2  Trp_halogenase  Tryptophan halogenase
      0.013   14.8   0.7      0.026   13.8   0.7    1.5  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
      0.014   14.5   0.9      0.038   13.0   0.9    1.6  1  Lycopene_cycl   Lycopene cyclase protein
      0.019   15.5   0.3        1.1    9.8   0.2    3.0  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      0.045   12.8   2.2      0.077   12.1   2.2    1.3  1  GIDA            Glucose inhibited division protein A
       0.11   12.0   0.2       0.22   11.1   0.2    1.4  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
       0.14   11.4   0.5       0.42    9.9   0.5    1.7  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
       0.14   11.1   0.0       0.56    9.2   0.0    1.8  2  SE              Squalene epoxidase
       0.16   11.9   2.6      0.089   12.7   0.2    1.8  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 


Domain annotation for each model (and alignments):
>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.8   8.5e-08     8e-05       1      36 [.     120     155 ..     120     159 .. 0.96
   2 !   66.4   0.0   2.6e-21   2.4e-18      81     174 .]     162     258 ..     156     258 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 8.5e-08
                 -HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH CS
        RPN7   1 DekwveelrkknekeleeLdaelkdakenlgkeeir 36 
                 D++wv   +k n++e+e+L++elk++k+nl+ke+ir
  KKY16102.1 120 DKEWVARKSKLNAAETERLEQELKGYKNNLIKESIR 155
                 89*********************************9 PP

  == domain 2  score: 66.4 bits;  conditional E-value: 2.6e-21
                 HHHHHTT-HHHHHHHHHHHHCSSS---..HHHHHHHHHHHHHHHHHTT-HHHHHHHHCTS-GGGT...TTT--HHHHHHHHHHHHHHH--HHHHHHH CS
        RPN7  81 rvaiffndwdlvskylekakellekggd.werknrlkvyeGlallairkfkeAaellldilstfts..kellsyedlavyavlcalatldRkdLkak 174
                 rv+i ++dw  v+++++++  l  k ++      r++++++l l+a+++++ Aa  +l++ + +t+  +e+l+++d+avy++lcala++dR++L++k
  KKY16102.1 162 RVSIDRGDWLTVTSNVSRVMGLHVKPEEsARNLPRVNAAQALSLMAQGHYHNAALSFLQVDPALTDtyNEVLTSNDVAVYGGLCALASMDRNELTSK 258
                 9*********************999776356678******************************99****************************876 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   2.9e-22   2.7e-19       3     323 ..    1106    1432 ..    1104    1460 .. 0.72

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 2.9e-22
                     EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCC..CEEEEEHHCH. CS
  FAD_binding_3    3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdt..pkaradlele. 93  
                      ++IVGaG+aGl +a   + aG +v+++e  ++ ++ + +  +++   +l+   G++++i++ +a     +++ y + +++   + + d +++ 
     KKY16102.1 1106 RIIIVGAGLAGLATAISCALAGHEVIVLESAKELAEVGAGLQITPNASRLFTAWGIDKQIQRLAAEPTSLTIHRYSD-GKIlaTQTNFDDQMRt 1198
                     689*************************************************************9999999999999.6665533333333441 PP

                     HCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGG....E.EEEEEE CS
  FAD_binding_3   94 sspervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgie....f.egeetv 182 
                       +    ++   +++r+L+++a+e g+q+  + +   l+ d+++v+++      g+   v+ + +v+aDG +S++r++        + +g    
     KKY16102.1 1199 KYGAPFIDLHRVDVQRALEARARELGVQILLDCRADDLNFDKTEVRTRS-----GK--VVQGELIVAADGLWSRCREKFLNAkddpLpTGDLAY 1285
                     44456678999***********************998888888866544.....33..378888************986433121231333333 PP

                     EEEEEEEEEEEC-SCCCTTC...CEEEEE.CCTTEEEEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHH...HHHHHHTTSSCEEEEEEEE CS
  FAD_binding_3  183 yeagvldvlfdadlsdivep...lvlils.aesrgvmviPlentlerfyvqvearaekeersekfteeevka...rlreivgektldveieevs 269 
                      ++  ld ++d++l+++ ++   +++i+  a+  g  +++ +    +++++v+ + +ke  ++  + +e+++    ++ i +  ++   +++v 
     KKY16102.1 1286 RIVLRLDEVNDTELQEWIAKptcHFWIGPgAHAVGYSLRAGQM--YNIVLLVPDNLPKEVARQSGSIDEMRKlfdGWDPILN--RFLQHVKSVD 1375
                     4456677788888888877788888886514444444444444..5566666666666655555555555550005555555..4555555566 PP

                     EEEEEEE.EESSS..EETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHT CS
  FAD_binding_3  270 awtvaqr.vaeky..rkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlk 323 
                     +w++ +r   e++   kg+  ++GDA+H + P   qG N++++D   L+  La+  +
     KKY16102.1 1376 KWKLMHRpELETWinDKGNFVMIGDACHPMLPYLSQGANSSLEDGAVLGGLLAHQRS 1432
                     6655444233444226789******************************99998655 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   1.2   1.3e-18   1.3e-15       1     190 [.     632     817 ..     632     884 .. 0.77

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 1.3e-18
  Fungal_trans   1 ldrffsnfhpqfpilhkpsflpkt...ssenssksayaspllllailalGalfsesetke.snssltsesqefiafplraeilihedfsspssslwi 93 
                   ld +fsn+h   p+++k+s+++k     ++++++ ++++  l la ++lGal    ++ + +   + ++s++      r ++  +++  + ++ +++
    KKY16102.1 632 LDAYFSNLHFIHPMIDKESIYRKSealWKNGPESQRNTFLNLYLALISLGALVRTWNEVSiMGMRRFDWSRNAF----RRAAMDMQKTGTRND-IET 723
                   789******999*************544444445555555555**********998775505555555543333....544444555555555.*** PP

  Fungal_trans  94 lqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrpp.llddsqinlpLPcdd 189
                   +q++++++  +++  + +l++ ++g+a+rla s g +r+p +  +    ++ +e      R+wwa ++l++ +++ lGrp  l +d   n p P  d
    KKY16102.1 724 IQTYFIMAKICQNELNPSLAYIYLGLAIRLALSAGINRKPRNFDR----QHAFELTLLTSRTWWALYSLEVELSFALGRPDtLGYDLYHNAPQPLVD 816
                   ********************************************4....35555555599********************96666666666666666 PP

  Fungal_trans 190 d 190
                   +
    KKY16102.1 817 E 817
                   5 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.2   9.2e-15   8.6e-12       2     104 ..     274     379 ..     273     380 .. 0.95

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 9.2e-15
                 HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSH...HHHHHHHHHHHHTTSSSEEEETT CS
         PCI   2 sysdllkalrsgnlsgfseelkdleeelladdglaqllesLekkvrerllrqvskiyssislerlaklldlsv...devEkilvklIrdgeirakidqe 97 
                 ++++ ++ + s+++s++ e+l+ +++++l d +l+ +++s +  +r +++ +++ ++s+++l+++a+ +  +v     v++ l+++I++g ++akid e
  KKY16102.1 274 HIRRAISFFCSSKYSQCLEILEAYRADYLLDIYLQSHVQSIYAAIRSKAIVSYFAPFSRVTLASMAQVFFPTVadtRLVDEELINMIEKGVLDAKIDLE 372
                 67778888999**********************************************************999899999********************* PP

                 TTEEEEC CS
         PCI  98 sgivvfk 104
                 ++++v k
  KKY16102.1 373 KRVLVSK 379
                 ****987 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.7   1.6e-07   0.00015       2      34 ..    1107    1141 ..    1106    1190 .. 0.77
   2 !   16.3   0.0   6.1e-06    0.0058     149     216 ..    1213    1279 ..    1206    1328 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.6e-07
                  EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTS CS
         DAO    2 vviiGGGiiGlstAyeLarrg..Vtllekgdiags 34  
                  ++i+G+G +Gl+tA   a +g  V++le+++++++
  KKY16102.1 1107 IIIVGAGLAGLATAISCALAGheVIVLESAKELAE 1141
                  9*******************99********99763 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 6.1e-06
                  HHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--GGGHH...HHHTT..CTTTSE CS
         DAO  149 taalaraaealGveilegtevtgleeedgkvwgverttp.gendaadavVnaaGawsd...llgll..keldlp 216 
                   +al ++a++lGv+il+ +++ +l+ +    ++v   t+ g +++ + +V a G+ws+   +   l  k+ +lp
  KKY16102.1 1213 QRALEARARELGVQILLDCRADDLNFD---KTEV--RTRsGKVVQGELIVAADGLWSRcreK--FLnaKDDPLP 1279
                  5799999*****************554...5889..566698855588*********87442..2232333234 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.4     1e-08   9.9e-06       2     163 ..    1106    1261 ..    1105    1266 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1e-08
                   SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS...S-HHHHHCGGGT-EEEETT-SGGGEEES...STTTTHHHHHHS-HHHHHHHHHHTT--EE CS
  HI0933_like    2 dviviGgGaAGlmaAisaakrgkrVlllekakk...lgrKilisGgGrcNvTnlseepeellsrypenpkflksalsrftnedlialveelgvelk 94  
                   ++i++G+G AGl +Ais+a +g++V++le+ak+   +g  ++i+ +    +T     +++ ++r++++p+ l   ++r++  +++a  ++ + ++ 
   KKY16102.1 1106 RIIIVGAGLAGLATAISCALAGHEVIVLESAKElaeVGAGLQITPNASRLFTA--WGIDKQIQRLAAEPTSL--TIHRYSDGKILATQTNFDDQMR 1197
                   68****************************98622257788888888888888..67777777766555554..6999999999998888888877 PP

                   E-STTEEEETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like   95 eedsgrlFpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163 
                   ++  g  F +  +  d+ +al+++++e gv++ l+++  +++ +++   +v+t+s++ ++ + +v A G
   KKY16102.1 1198 TK-YGAPFIDL-HRVDVQRALEARARELGVQILLDCRADDLNFDKT---EVRTRSGKVVQGELIVAADG 1261
                   65.57778777.8899*************************66555...58885555555555555444 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.3   3.1e+03     263     290 ..      61     106 ..      56     109 .. 0.70
   2 ?   -2.5   0.0       2.5   2.3e+03     172     201 ..     213     241 ..     199     246 .. 0.76
   3 !   16.3   0.8   4.6e-06    0.0044       2      41 ..    1106    1145 ..    1105    1190 .. 0.79
   4 !    5.7   0.0    0.0081       7.6     184     237 ..    1211    1262 ..    1200    1285 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.3
                  TSBESSTTEEE-GGGC..................TECCSS--HHHH CS
                  xxxxxxxxxxxxxxxx..................xxxxxxxxxxxx RF
  Pyr_redox_2 263 flrtnvpgiyaiGDva..................ggkggpelaqaA 290
                  ++rt+ + +++iG +                   ++ +++ela+ A
   KKY16102.1  61 SGRTKFDRLFLIGTCStvlgldalkaavieaksgSDVRRYELAVQA 106
                  5799***********9666666666666666666566666666666 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.5
                  ESSSSSSTTS-HHHHHHHHHHHHHTTEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 172 eardrllraldkelsaaleealekeGvevk 201
                   a+  +l ++d++l+++++e+l+ ++v+v+
   KKY16102.1 213 NAALSFL-QVDPALTDTYNEVLTSNDVAVY 241
                  5555566.799****************986 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 4.6e-06
                   SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2    2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcl 41  
                   +++++G+G AGla+a+  a ag++v+++e+ +++  +g  
   KKY16102.1 1106 RIIIVGAGLAGLATAISCALAGHEVIVLESAKELAEVGAG 1145
                   6899*********************999966665555444 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0081
                   HHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-E CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  184 elsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGv 237 
                   ++++ale++ ++ Gv++ l +++ +++ +++  ev + +g++++ +l+v a G+
   KKY16102.1 1211 DVQRALEARARELGVQILLDCRADDLNFDKT--EVRTRSGKVVQGELIVAADGL 1262
                   57889999*******************9998..999***************997 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.47   4.4e+02     229     291 ..     200     257 ..     183     282 .. 0.86
   2 !   22.1   4.8   7.4e-08     7e-05       2      33 ..    1107    1138 ..    1106    1155 .. 0.91
   3 ?   -0.7   0.0       0.6   5.6e+02     143     176 ..    1212    1245 ..    1144    1261 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.47
                    HHHHHHCTTSSEES..TT-EEEEEEEET....TTTBB--THHHHTT-EEE-TTSSBTHGGGS- CS
  FAD_binding_2 229 glalalragaalnddrmeevqfhPtslvpirdgsgiLitealrgeGgilvdkdGrrFmnelas 291
                    ++al l+a+++  +++++++q  P  ++   + + +L + +++  Gg++  ++  r  nel+s
     KKY16102.1 200 AQALSLMAQGHYHNAALSFLQVDPALTD---TYNEVLTSNDVAVYGGLCALASMDR--NELTS 257
                    5678899****9999************9...7888999**********99999999..99954 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 7.4e-08
                     EEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2    2 viViGsGlAGLaAAleaaeaGlkvavvekeqe 33  
                     +i++G+GlAGLa A+++a aG++v+v+e ++e
     KKY16102.1 1107 IIIVGAGLAGLATAISCALAGHEVIVLESAKE 1138
                     79**************************9876 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.6
                     HHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEE CS
  FAD_binding_2  143 llarlvesarkagvdfqerteadeLivedgrvtG 176 
                     +  +l ++ar++gv+++  ++ad+L+ ++ +v++
     KKY16102.1 1212 VQRALEARARELGVQILLDCRADDLNFDKTEVRT 1245
                     567899999****************999888875 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.5   7.2e-07   0.00068       1      30 [.    1109    1138 ..    1109    1157 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 7.2e-07
                     EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8    1 IvGaGlsGlvaAylLakagfdvlllekrdr 30  
                     IvGaGl+Gl++A  +a ag++v +le++  
     KKY16102.1 1109 IVGAGLAGLATAISCALAGHEVIVLESAKE 1138
                     9*************************9876 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.9e-06    0.0065       2      33 ..    1107    1138 ..    1106    1247 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.9e-06
  FAD_oxidored    2 vvVvGGgpaGvaAAiaAaraGakvlLveergv 33  
                    +++vG+g+aG+a Ai++a aG +v+++e  + 
    KKY16102.1 1107 IIIVGAGLAGLATAISCALAGHEVIVLESAKE 1138
                    79*************************98765 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.2   5.7e-05     0.054       1      61 [.    1106    1164 ..    1106    1177 .. 0.88
   2 ?    3.1   0.1     0.037        35     151     220 ..    1207    1273 ..    1169    1278 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.7e-05
                      EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S.SS---SS-EE--THHHHTHHHHT--HH CS
  Trp_halogenase    1 kivivGGGtaGwlaAaalakalkgklevtlvese.eigtvgvGeatipsirkllrlLgidee 61  
                      +i+ivG+G aG  +A+ +a a+   +ev ++es+ e+  vg G   +p+   l+   gid +
      KKY16102.1 1106 RIIIVGAGLAGLATAISCALAG---HEVIVLESAkELAEVGAGLQITPNASRLFTAWGIDKQ 1164
                      69**********9999999998...99****986379**********************976 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.037
                      E-HHHHHHHHHHHHHHCT-EEEE--EEEEEE-T.TS-EEEEEETTS-EEE-SEEEE-SGGG-IIIIIIT-- CS
  Trp_halogenase  151 ldaalyakfLrrvaearGvtrvegkvvevqlde.dgrveslrledgreveadlfiDcsGfrgllieqaLkt 220 
                      l +  +++ L++ a + Gv+++ ++ ++    + + + +++r+ +g++v+++l++ + G  ++  e+ L++
      KKY16102.1 1207 LHRVDVQRALEARARELGVQILLDCRAD----DlNFDKTEVRTRSGKVVQGELIVAADGLWSRCREKFLNA 1273
                      556678899999********99998743....223344789*******************99999998876 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.7   2.8e-05     0.026       1      30 [.    1108    1136 ..    1108    1165 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.8e-05
  Pyr_redox_3    1 iIiGaGPaGlaaaielkkagledylilEkg 30  
                   iI+GaG aGla+ai +  ag  ++++lE +
   KKY16102.1 1108 IIVGAGLAGLATAISCALAGH-EVIVLESA 1136
                   8*******************9.79****86 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.9     4e-05     0.038       2     146 ..    1107    1267 ..    1106    1276 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4e-05
  Lycopene_cycl    2 vvviGaGpAglslAarlteakpglkvvliea.......spsllfpnnyvWsdefedlga.............leecvehsWsgtivylddgkki 75  
                     ++++GaG+Agl+ A     a +g +v+++e+       +++l  ++n +  +   ++++             +++  + +   t+  +dd+ ++
     KKY16102.1 1107 IIIVGAGLAGLATAISC--ALAGHEVIVLESakelaevGAGLQITPNASRLFTAWGIDKqiqrlaaeptsltIHRYSDGKILATQTNFDDQMRT 1198
                     79************999..777777777765111111155666677765444444444444678888777777777777777889999999999 PP

  Lycopene_cycl   76 llgraYgrvsskrlkeellerlvengvk.lleakvesveeeeageslvvleggrkirarlvvdarglaslkk 146 
                     + g ++  +++ + ++ l+ r  e gv+ ll+ +++  + ++     v +  g+ +++ l+v a gl s+++
     KKY16102.1 1199 KYGAPFIDLHRVDVQRALEARARELGVQiLLDCRADDLNFDKT---EVRTRSGKVVQGELIVAADGLWSRCR 1267
                     999********************998863689******99999...8999****************998875 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2    0.0012       1.1       1      35 [.    1106    1140 ..    1106    1162 .. 0.88
   2 ?    2.1   0.0       0.3   2.8e+02      41      77 ..    1211    1244 ..    1209    1248 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0012
                  EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox    1 kvvvvGgGyiglElAgalaelgkkVtvversdkll 35  
                  ++++vG+G+ gl  A   a  g++V v+e +++l 
  KKY16102.1 1106 RIIIVGAGLAGLATAISCALAGHEVIVLESAKELA 1140
                  799***************************99987 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.3
                  HHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEE CS
   Pyr_redox   41 easkilqeklekngievllntkveeiegsedgvesvk 77  
                  +++++l+ + +++g+++ll+ ++  ++ ++ +   v+
  KKY16102.1 1211 DVQRALEARARELGVQILLDCRADDLNFDKTE---VR 1244
                  5788999*************999988866654...44 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   2.2   8.2e-05     0.077       2      37 ..    1107    1141 ..    1106    1153 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.2e-05
                  EEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT- CS
        GIDA    2 viViGgGhAGceAAlaaarlGakvlLithkldtiae 37  
                  +i++G+G+AG++ A+ +a +G++v+ + ++ +++ae
  KKY16102.1 1107 IIIVGAGLAGLATAISCALAGHEVIVL-ESAKELAE 1141
                  89**********************998.55555554 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00023      0.22       2      30 ..    1106    1134 ..    1105    1142 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00023
                      EEEEE--STTHHHHHHHHHHCTSEEEEE- CS
  UDPG_MGDP_dh_N    2 kisviGlGYvGlvtaavlaeighevigvD 30  
                      +i ++G+G  Gl ta+  a +ghevi++ 
      KKY16102.1 1106 RIIIVGAGLAGLATAISCALAGHEVIVLE 1134
                      899***********************976 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.5   0.00045      0.42      23      63 ..    1099    1139 ..    1086    1155 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00045
                   ETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHH CS
  AlaDh_PNT_C   23 vpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrpar 63  
                    +g++  +++++G+G aGl+ +  ++  g +V vl+  ++ 
   KKY16102.1 1099 SKGTADLRIIIVGAGLAGLATAISCALAGHEVIVLESAKEL 1139
                   57888899************99999999******9987765 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.84   7.9e+02       3      22 ..    1254    1273 ..    1252    1289 .. 0.87
   2 ?    9.2   0.0   0.00059      0.56     104     190 ..    1366    1452 ..    1308    1470 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.84
          SE    3 kltvvcDGifsklRkelsdn 22  
                  +l v +DG++s+ R ++ + 
  KKY16102.1 1254 ELIVAADGLWSRCREKFLNA 1273
                  68899*********998754 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00059
          SE  104 sfkkaleeg.klrsmpnkflpasknekkGlillGDalnmRHPltggGmtvalnDivllskllkpledlsdeekvleelksfyvkRkel 190 
                   f + +++  k + m    l++  n+k  ++++GDa     P  + G    l+D ++l  ll      +  +++ ++l+ f   Rk+ 
  KKY16102.1 1366 RFLQHVKSVdKWKLMHRPELETWINDKGNFVMIGDACHPMLPYLSQGANSSLEDGAVLGGLLAHQ-RSNTPASLNKTLTLFQSLRKKR 1452
                  566666665499**************************99**********************998.4567788999999999999875 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.2         9   8.5e+03      15      65 ..      87     140 ..      85     147 .. 0.67
   2 ?   12.7   0.2   9.4e-05     0.089       2      38 ..    1107    1143 ..    1106    1171 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 9
                 HHHHHHTT-EEEEE-S-HHHHHHHHHHHHH...HHHCCTTTTSS-HHHHCCCHH CS
     3HCDH_N  15 aavfasagleVvlvdiseealekalekiek...sleklvekgklkeeeveaala 65 
                 a + a++g +V+ ++ + +al+k   ++++     e +++k kl+++e+e++ +
  KKY16102.1  87 AVIEAKSGSDVRRYELAVQALQKLDPSATEailDKEWVARKSKLNAAETERLEQ 140
                 556688899999999999999988777766432233456666666666666555 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 9.4e-05
                  EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHH CS
     3HCDH_N    2 vaviGaGtmGagiaavfasagleVvlvdiseealeka 38  
                  + ++GaG+ G   a  +a ag+eV +++ ++e +e +
  KKY16102.1 1107 IIIVGAGLAGLATAISCALAGHEVIVLESAKELAEVG 1143
                  679*************************999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 1.10u 0.34s 00:00:01.44 Elapsed: 00:00:00.55
# Mc/sec: 8388.58
//
Query:       KKY16103.1  [L=615]
Description: putative c2h2 finger domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-05   25.2  18.8       0.26   11.8   1.1    5.6  5  zf-C2H2      Zinc finger, C2H2 type
  ------ inclusion threshold ------
      0.014   15.6   2.8      0.016   15.4   1.4    1.6  2  YL1          YL1 nuclear protein
       0.13   13.2  21.1        0.6   11.1   0.8    5.8  5  zf-C2H2_4    C2H2-type zinc finger
        0.4   11.0   3.7       0.21   11.9   0.2    2.4  3  zf-C2H2_2    C2H2 type zinc-finger (2 copies)
          1    8.8   3.2        1.7    8.1   0.0    2.2  2  EBV-NA3      Epstein-Barr virus nuclear antigen 3 (EBNA-3)
        1.9    9.2   5.8         13    6.5   0.6    3.5  3  FOXP-CC      FOXP coiled-coil domain
          9    6.8  10.1          2    8.9   0.6    3.5  3  zf-met       Zinc-finger of C2H2 type


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   1.1    0.0001      0.26       2      23 .]     258     278 ..     258     278 .. 0.93
   2 !    7.1   0.5    0.0033       8.4       2      23 .]     285     311 ..     285     311 .. 0.93
   3 !    8.1   0.1    0.0015       3.9       2      23 .]     317     346 ..     316     346 .. 0.92
   4 !    6.6   0.2    0.0047        12       2      20 ..     376     394 ..     376     395 .. 0.93
   5 ?    0.4   0.0      0.42   1.1e+03      13      22 ..     426     435 ..     425     435 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0001
                 EET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   2 kCp..dCgksFkrksnLkrHirtH 23 
                 +Cp  dCgk+F    +Lk+H+ tH
  KKY16103.1 258 RCPhpDCGKVF---KDLKAHMLTH 278
                 69999******...99*****999 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0033
                 EET..TTT...EEESSHHHHHHHHHCC CS
     zf-C2H2   2 kCp..dCg...ksFkrksnLkrHirtH 23 
                 kCp   C    k F rk++ +rH  tH
  KKY16103.1 285 KCPivTCEynqKGFARKYDKNRHTLTH 311
                 69999999999***************9 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0015
                 EETTTT.......EEESSHHHHHHHHHC.C CS
     zf-C2H2   2 kCpdCg.......ksFkrksnLkrHirt.H 23 
                 +C+ C+       ksF+r + +krH+ + H
  KKY16103.1 317 VCGFCPgsgsaaeKSFNRADVFKRHLTSvH 346
                 6999999999999************99888 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0047
                 EETTTTEEESSHHHHHHHH CS
     zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                 kC+ C+ +F++  ++  H+
  KKY16103.1 376 KCSTCSATFNNAQDFYEHL 394
                 7*************99996 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.42
                 HHHHHHHHHC CS
     zf-C2H2  13 ksnLkrHirt 22 
                 k+ L+rH+ t
  KKY16103.1 426 KDTLERHMLT 435
                 578*****75 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.1   2.8e+03     114     166 ..     340     400 ..     300     417 .. 0.65
   2 ?   15.4   1.4   6.2e-06     0.016      47     133 ..     425     531 ..     400     550 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.1
                 x........xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1 114 p........qakeprpkkks.eraswlpaeslltpkrRkssRastvenkeqleerlkereer 166
                 +        ++++p+ +k+s    ++l++  ++ ++ + s+ ++t  n + ++e l +   r
  KKY16103.1 340 RhltsvhgvEQTPPNSRKRSpGSNKKLSS-YCQDATGKCSTCSATFNNAQDFYEHLDDCVLR 400
                 13333444433345666666455555554.44566678899999999999999888766555 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 6.2e-06
                 x..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxx.xxxxxxx RF
         YL1  47 e..........nsDsdfdsdeedeesdeeedeeegekelerqerkkrkkekkkrkaqkkkskkkkkkqkkkkkkkidp..........qak.eprpkkk 124
                            ++Ds ++ ++ed +++ee+++e++e  l++++  k + + +k+ a+++     ++++++kk   + +              + r+k+k
  KKY16103.1 425 VkdtlerhmltQTDSFISIEQEDADDAEEDEDEDDEDSLKNPRSGKGHIKAQKSGAPSSRVVLGTNSAINKKSGVVRKgltfskggvsL-VgKGRKKRK 522
                 0444555566689****99*999999999999999999998888888666688889999999999899998888777799998776432.123466666 PP

                 xxxxxxxxx RF
         YL1 125 seraswlpa 133
                 +  +sw  +
  KKY16103.1 523 HYPTSWGMS 531
                 666666665 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.8   0.00023       0.6       2      23 ..     258     278 ..     258     279 .. 0.89
   2 ?    3.1   0.3      0.09   2.3e+02       2      23 ..     285     311 ..     285     312 .. 0.86
   3 ?    1.5   1.5      0.29   7.3e+02       8      24 .]     330     346 ..     317     346 .. 0.81
   4 ?    7.5   0.1    0.0033       8.5       2      20 ..     376     394 ..     376     396 .. 0.93
   5 ?   -0.9   0.0       1.6   4.2e+03      13      22 ..     426     435 ..     425     436 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00023
   zf-C2H2_4   2 kCpi..CgksFsskkaLlrHlkth 23 
                 +Cp+  Cgk+F++ ka   H++th
  KKY16103.1 258 RCPHpdCGKVFKDLKA---HMLTH 278
                 599999*****99999...99988 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.09
   zf-C2H2_4   2 kCpi..C...gksFsskkaLlrHlkth 23 
                 kCpi  C   +k F +k++ +rH +th
  KKY16103.1 285 KCPIvtCeynQKGFARKYDKNRHTLTH 311
                 5888788888999******999*9999 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.29
   zf-C2H2_4   8 ksFsskkaLlrHlkthH 24 
                 ksF++ + ++rHl ++H
  KKY16103.1 330 KSFNRADVFKRHLTSVH 346
                 789777779****9999 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0033
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHl 20 
                 kC+ C+++F++ +++  Hl
  KKY16103.1 376 KCSTCSATFNNAQDFYEHL 394
                 7**************9997 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 1.6
   zf-C2H2_4  13 kkaLlrHlkt 22 
                 k++L rH++t
  KKY16103.1 426 KDTLERHMLT 435
                 56799***87 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       3.3   8.5e+03      64      73 ..     269     278 ..     259     305 .. 0.69
   2 ?   11.9   0.2   8.3e-05      0.21       7      74 ..     330     398 ..     316     423 .. 0.70
   3 ?   -2.2   0.0       2.1   5.4e+03      63      85 ..     426     448 ..     417     453 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.3
   zf-C2H2_2  64 ealreHmkkk 73 
                 ++l++Hm ++
  KKY16103.1 269 KDLKAHMLTH 278
                 5566666544 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 8.3e-05
   zf-C2H2_2   7 kkskeveellehmskkhgffipereylv....dleglleylrekieekleClyCekefkslealreHmkkkg 74 
                 k++++++   +h+++ hg+    +++ +      ++l +y+++   +   C +C+ +f++ +++ eH+ +  
  KKY16103.1 330 KSFNRADVFKRHLTSVHGVEQTPPNSRKrspgSNKKLSSYCQDATGK---CSTCSATFNNAQDFYEHLDDCV 398
                 34566788999********9885555551234566666666666655...*****************98755 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.1
   zf-C2H2_2  63 lealreHmkkkgHckineeeeee 85 
                 +++l+ Hm ++    i+ e+e+ 
  KKY16103.1 426 KDTLERHMLTQTDSFISIEQEDA 448
                 56788999888888777766554 PP

>> EBV-NA3  Epstein-Barr virus nuclear antigen 3 (EBNA-3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00068       1.7     169     245 ..      79     161 ..      69     167 .. 0.76
   2 ?   -1.9   3.1      0.76   1.9e+03     209     234 ..     439     463 ..     403     476 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00068
                 XX.XXXXXXXXXXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXX CS
     EBV-NA3 169 PWldanPveipyddtlteeaidaafargqaqgiellrtegepvedatsetseese.......dveaesddeelPqivprnepvv 245
                 P      v  py  ++    ++ a+  +q  g++   + ge+ +   + t+ es+         +a+s d  l q  p++++v 
  KKY16103.1  79 PSATSSTVGSPYSGPIHTIHYQDAYSSSQSLGLDPTILTGENFGYDFGTTDFESDlkfnmhhKADADSVDPSLIQ-SPQMPTVS 161
                 5555667789********************************************999966443444444433322.35666655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.76
                 XXXXXXXXXXXXXXXXXXXXXXXXXX CS
     EBV-NA3 209 epvedatsetseesedveaesddeel 234
                   +     e+ ++ e+ e e d++ l
  KKY16103.1 439 SFI-SIEQEDADDAEEDEDEDDEDSL 463
                 333.3444555555555555555544 PP

>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.6    0.0052        13       4      27 ..     256     280 ..     255     295 .. 0.79
   2 ?    0.3   0.0      0.45   1.1e+03      13      33 ..     329     349 ..     319     352 .. 0.84
   3 ?    2.0   0.2      0.13   3.4e+02      11      27 ..     379     395 ..     373     398 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0052
     FOXP-CC   4 kgvCkWPgCekvledve.eflkhln 27 
                  g C  P+C kv++d++ ++l h +
  KKY16103.1 256 RGRCPHPDCGKVFKDLKaHMLTHQS 280
                 699************8724566654 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.45
     FOXP-CC  13 ekvledveeflkhlnseHald 33 
                 ek ++ ++ f +hl s H ++
  KKY16103.1 329 EKSFNRADVFKRHLTSVHGVE 349
                 778899999*********875 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.13
     FOXP-CC  11 gCekvledveeflkhln 27 
                  C++ ++++++f++hl+
  KKY16103.1 379 TCSATFNNAQDFYEHLD 395
                 59*************97 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   1.7       5.6   1.4e+04       9      19 ..     229     239 ..     228     241 .. 0.83
   2 ?    3.1   0.0     0.053   1.4e+02       8      22 ..     330     344 ..     329     345 .. 0.92
   3 ?    8.9   0.6   0.00078         2       3      20 ..     377     394 ..     376     395 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5.6
      zf-met   9 tfnsesqlksH 19 
                 ++ se ++ sH
  KKY16103.1 229 SVASEHSYHSH 239
                 5789******* PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.053
      zf-met   8 vtfnsesqlksHlqG 22 
                 ++fn   ++k Hl +
  KKY16103.1 330 KSFNRADVFKRHLTS 344
                 89***********87 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00078
      zf-met   3 CelCnvtfnsesqlksHl 20 
                 C+ C  tfn+ +++  Hl
  KKY16103.1 377 CSTCSATFNNAQDFYEHL 394
                 **************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       865  (0.0482459); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.50
# Mc/sec: 3664.43
//
Query:       KKY16104.1  [L=439]
Description: hypothetical protein UCRPC4_g06015 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-23   82.5   0.5    5.8e-23   81.4   0.5    1.4  1  Glyco_transf_90  Glycosyl transferase family 90


Domain annotation for each model (and alignments):
>> Glyco_transf_90  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.5   3.2e-27   5.8e-23      46     327 ..     130     406 ..      83     415 .. 0.83

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 3.2e-27
  Glyco_transf_90  46 grvyvekykksvqtrdvftiwgilqLlrkypgklpDlelmfncdDr.PvvkkkdyrgkeaappPlfsycgdeetlDivfPdwsfwgwpev.... 134
                       ++yv   +  + +r + t+ +++  + + p  lp +e+ f  dD+ P   +++y++            + ++    ++Pd+ f++wpe+    
       KKY16104.1 130 AQLYVLDTQGQIYSRGIATLLDLHRAIITAPEPLPNIEFTFSTDDWlPPAAQWAYAR------------KADDRQTWLMPDFGFYSWPETkvgs 211
                      578888888888999899999999999999999999999999999877777777772............445566679************5554 PP

  Glyco_transf_90 135 ....nikrwslllkelkegnkkvkweerepyaywkGnpsvaetReeLlkcnrskkelvdarltkqdekkeskegvkessledqckhkYkiyieG 224
                          + k   ++ ++l+ + + ++w  + p+  w+G       R+  +++ ++k   + a +t  d+++++ +    +s+ ++c++k+    eG
       KKY16104.1 212 ygevQEKAIAMEDTALNPSGQAWSWDVKYPKLVWRGATMGLPLRDAFVELTHNK---TWADVTALDWHNKNSTDSDLKSMDEHCQYKFVAHTEG 302
                      44222222223333466677899***************************9883...45899999***999999999***************** PP

  Glyco_transf_90 225 vaasvsekyilacdslvllvkpeyydffsreLk...plehYvPikskdklrdlkeavdwgnahdekaqeiaeegseFireeLk.mddvydYmfh 314
                       ++s ++ky+  c+s+v++++  + ++fs  +    p+++++ ik+  + +d+ ea++   ++d++a++ia ++ +  re  +      +Y+  
       KKY16104.1 303 NSYSGRLKYLQNCRSVVVAHELDWIQHFSPLMSssgPTQNFLQIKR--DFSDMDEAMEKQLQDDDRAKQIADNSVKTFRERYTtPSAEACYWRD 394
                      ****************************9888655599*******9..***********************998766566555056678***** PP

  Glyco_transf_90 315 LlteYakllkykp 327
                      L++ ++++ ++kp
       KKY16104.1 395 LIRGWSEV-SFKP 406
                      **999985.4555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3109.99
//
Query:       KKY16105.1  [L=258]
Description: putative common central domain of tyrosinase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.4e-22   78.3   0.0    1.1e-21   77.7   0.0    1.3  1  Tyosinase_C  Tyosinase C-terminal domain


Domain annotation for each model (and alignments):
>> Tyosinase_C  Tyosinase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0   6.2e-26   1.1e-21       1     122 []     109     225 ..     109     225 .. 0.91

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 6.2e-26
  Tyosinase_C   1 dwvanvrvekyalggsftihfflGdppedpttwatapnlvGsvavfasaeeegcencqaaskvlvtgqvpLtsaLler..agelesldpeeVepyLkk 96 
                  +w+an +v+k+ l+ sf+i +flG+pp+++++w+ a nl G++ v++s    g++     ++v+  gq+ Lt+ L+++  +g +++l++++V+p Lk 
   KKY16105.1 109 QWIANLNVDKHVLNASFNIDVFLGNPPANKDDWPLATNLLGTFVVLSS---AGASP--MGNEVQKFGQIQLTASLASAvsNGVIADLSEASVIPLLKS 201
                  8*********************************************53...34444..467999***********99865599*************** PP

  Tyosinase_C  97 nLkwrvvkadgeevdpeelpsLkvsv 122
                  +L+      +ge ++  +l+sL +++
   KKY16105.1 202 SLQAHLRARNGESIE--DLSSLVITI 225
                  ************998..999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1802.33
//
Query:       KKY16106.1  [L=494]
Description: putative ph-response regulator protein palc [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3478.62
//
Query:       KKY16187.1  [L=444]
Description: hypothetical protein UCRPC4_g05992 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 2896.87
//
Query:       KKY16188.1  [L=937]
Description: putative methionyl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   9.5e-132  439.4   0.0   1.5e-131  438.8   0.0    1.2  1  tRNA-synt_1g   tRNA synthetases class I (M)
    2.9e-23   82.3   0.2    5.7e-23   81.4   0.2    1.5  1  adh_short      short chain dehydrogenase
    5.8e-13   48.9   0.3    1.2e-12   47.9   0.3    1.5  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    5.9e-08   32.8   0.3    2.7e-07   30.7   0.3    2.0  1  KR             KR domain
     0.0025   17.7   0.2     0.0025   17.7   0.2    2.2  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
  ------ inclusion threshold ------
      0.039   14.4   0.2      0.094   13.2   0.2    1.6  1  NAD_binding_7  Putative NAD(P)-binding
       0.13   11.6   0.1       0.27   10.5   0.1    1.4  1  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,
       0.44    9.7  13.4       0.83    8.8  13.4    1.4  1  ISG65-75       Invariant surface glycoprotein
        1.7    8.3  12.3        3.1    7.5  12.3    1.3  1  TAF4           Transcription initiation factor TFIID componen
          3    6.7  10.2          5    5.9  10.2    1.2  1  NARP1          NMDA receptor-regulated protein 1


Domain annotation for each model (and alignments):
>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  438.8   0.0  8.2e-135  1.5e-131      28     391 .]     310     674 ..     304     674 .. 0.98

  Alignments for each domain:
  == domain 1  score: 438.8 bits;  conditional E-value: 8.2e-135
                   HHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SEEEETTSHHHHHHHHHHHHHHHHTT-EEEEEEEEEEET CS
  tRNA-synt_1g  28 faRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkklnisfdkygrttseehkelvqeifkklkekgliyekeieqlycp 124
                   + Ry+++rg+ +l+vcgtDe+Gt++e+kA +egv+p+el++k+++ ++e++++++i fd +grt +e+h++++q++f k+kekg++ e+++eq +cp
    KKY16188.1 310 IFRYNKARGRPTLYVCGTDEYGTATETKALEEGVSPAELCAKYNKVHAEVYDWFEIGFDIFGRTPTEQHTKISQDMFLKVKEKGFLAERTSEQPFCP 406
                   68*********************************************************************************************** PP

                   TTTEEE-GGG-EE........-TTS-EE-TTSSB-E................EEE.EEEEEE-GGGGHHHHHHHH.HH-TT..SHHHHHHHH.HHHH CS
  tRNA-synt_1g 125 kderflpdryvegtCPkckseeargdqceecgkkleptelinpksaisgskpevketehlffklskfekklkewieeeeke..leenvkkivkewlk 219
                   k+++fl+dr+vegtC  c++e+argdqc++cg+ l+p +linp++++ g++p+ +et+h ++ l+k++  ++e++ee+ ++  +++n+k i+++wlk
    KKY16188.1 407 KHGKFLADRFVEGTCKICGYEDARGDQCDKCGNLLDPFDLINPRCKVDGETPIRRETTHTYLLLDKLQPVIEEFTEESIRKggWSRNAKIITESWLK 503
                   ***************************************************************************88877789************** PP

                   T----EE-ESS-SSS-EET..TECCEEE-HHHHHHHHHHHTTTTT-...TTSGGGG.G--S......EEEEEGGGHHHHHTHHHHHHHH..TT---- CS
  tRNA-synt_1g 220 egLkdlaisrdldwGipvP..gaekkvlYVWldAligYisatkelakkkgeeekwkeyWakdkevelvhfigkdiikFHtifwPaillg..aelklp 312
                   egLk++ i+rdl+wG+pvP  g e+kvlYVW++A igY s+t +++       +w+++W++ ++vel +f+gkd+++FH++++P ++++   +++++
    KKY16188.1 504 EGLKERGITRDLSWGVPVPlpGYESKVLYVWFEACIGYPSITANYT------AEWEQWWRNPENVELFQFLGKDNVPFHSVIFPGCQIAtgDKWTKL 594
                   ******************999************************9......89*****99999*********************99988899**** PP

                   S-EEEE--EEE--------------HHHHHHH.H-HHHHHHHHHHHS-TTS-EEE-HHHHHHHHHHHCCCHHHHHHHHH. CS
  tRNA-synt_1g 313 kkvvaheyltvegkKlSkSrgvvvkakealer.ldadllRYylaaeapekkDldfswedfvervNseLadklgnlvnRvl 391
                   ++++a+eyl++eg+K+SkSrg++v+ ++a e+ +++d++RYyl++++pe+ D++f+w++f++ +NseL +klgn+vnRv+
    KKY16188.1 595 HHLSATEYLNYEGGKFSKSRGIGVFGNNAKETgIPPDVWRYYLLKNRPESGDTQFEWRSFIDGNNSELLAKLGNFVNRVI 674
                   ******************************************************************************85 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.2   3.2e-26   5.7e-23       1     171 [.      15     203 ..      15     238 .. 0.88

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 3.2e-26
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.....TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSE..SEEEE---SS--SS CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.....gakalaiqvDvtdreevealvekavkklgkl..dvLvnNAGitgsgp 92 
                 k+v+vtG+s+G+G+ iak+la++Ga+vv+v+++  kle++ k + ++     ++++++i++D++++ e++++v+++     ++  d++  +AG + +g 
  KKY16188.1  15 KTVIVTGGSQGMGLGIAKKLASKGANVVIVAQNVPKLENATKAISSCaskyqSQRFHYISADLRKSVETDRVVSEVTTWNNNVvaDAVFCCAGNSLPGY 113
                 79*******************************9999999888887766688899*********************9888777679************* PP

                 GGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH...........HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGT CS
   adh_short  93 fselseeewervievNltgvflltravlpaml...........kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptg 171
                 f ++s+e  ++ ++  + +  ++++++++a+l           + s  +Iv++sSv ++ p+ag+a+Y  +Kaa++gl+++l +e+++++
  KKY16188.1 114 FVDTSSEVLRAQMDSIYWSGANMAHSIMKAWLstgekkesssdSTSTRHIVFTSSVLAFFPLAGYAPYNPAKAALRGLADTLVQEVNYYN 203
                 ******************************9999998777765556668*************************************9987 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.3   6.9e-16   1.2e-12       3     158 ..      23     198 ..      19     207 .. 0.83

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 6.9e-16
                   TTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHH...HHHTTSE.E..EE--TTSHHHHHHHHHHHHHHHSSE..EEEEE-----EGCSS-GGGH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneea.kkrveel...aeelgae.v..lecDVtdeeqvealveevvekfgkl..Dilvnnagiapklkgpflet 90 
                    +g+G +iAk+la++Ga+vv++ +n  + +++++++   a++++++ +  + +D ++  + +++v+ev+   +++  D ++ +ag + +  g f++t
    KKY16188.1  23 SQGMGLGIAKKLASKGANVVIVAQNVPKlENATKAIsscASKYQSQrFhyISADLRKSVETDRVVSEVTTWNNNVvaDAVFCCAGNSLP--GYFVDT 117
                   58***********************9985444433311155555555477******************998865444************..****** PP

                   -HHHHHHHHHHHTHHHHHHHHHHHH.HCTSC............CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHH CS
  adh_short_C2  91 sreefdraldvnlyslfllakaalp.lmkeg............gsivnlssvgaervvpnynaygaaKaalealtrylAve 158
                   s e ++  +d    s +++a+ +++  +  g              iv +ssv a   +++y+ y+ aKaal +l+ +l  e
    KKY16188.1 118 SSEVLRAQMDSIYWSGANMAHSIMKaWLSTGekkesssdststRHIVFTSSVLAFFPLAGYAPYNPAKAALRGLADTLVQE 198
                   ********************9999984444345677777766666****************************99887666 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.3   1.5e-10   2.7e-07       2     162 ..      16     194 ..      15     200 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.5e-10
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT..T-EEEE----TT-HHHHHHHHHHHHHHSS--..-EEEE--------- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal..gaevevvaaDvsdkdavealleeikaeeppi..kGvihaAgvlrdkl 96 
                 t+++tGG  g+Gl +a+ la+kga+ +++     ++ e++++ i++++++    + ++++aD+ ++ +  ++++e+++ ++++    v+ +Ag +  + 
  KKY16188.1  16 TVIVTGGSQGMGLGIAKKLASKGANVVIVAQNV-PKLENATKAISSCASKyqSQRFHYISADLRKSVETDRVVSEVTTWNNNVvaDAVFCCAGNSLPGY 113
                 689********************9766665555.777777778888877544779**********************9996652358************ PP

                 TTT--HHHHHHHHTTTTH.HHHHHHHHTTT..............S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHH CS
          KR  97 leemtaedleqvlapKvk.GawnLhelled..............esldffvlfSSiagllgsagqanYaaaNaflDalaey 162
                 + ++++e l++ + +    Ga   h +++               +s  ++v++SS+ +++  ag a Y  a a l +la++
  KKY16188.1 114 FVDTSSEVLRAQMDSIYWsGANMAHSIMKAwlstgekkesssdsTSTRHIVFTSSVLAFFPLAGYAPYNPAKAALRGLADT 194
                 ******9999999887651555555555557778888888888888999*********************99999999876 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2   1.4e-06    0.0025       9      67 ..      25      81 ..      16     103 .. 0.67
   2 ?   -3.6   6.2         5     9e+03      31      82 ..     849     900 ..     844     910 .. 0.52

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.4e-06
                CCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCE CS
     3HCDH_N  9 tmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalari 67
                 mG gia+ +as+g +Vv+v  +  +le+a+++i++  +k ++ ++++    +++ + +
  KKY16188.1 25 GMGLGIAKKLASKGANVVIVAQNVPKLENATKAISSCASKYQS-QRFH-YISADLRKSV 81
                5**********************************96666544.4444.2222333333 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5
                 -HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHHC-SEE CS
     3HCDH_N  31 seealekalekieksleklvekgklkeeeveaalarisfttdleeavdadlv 82 
                 +++  ++a++++ek  +k++ k++  + ++++a++    +t +e+ ++ d v
  KKY16188.1 849 KKKEEDEAKKAAEKARKKQADKERKAARKAAEAANAAAGATGVEASAKGDEV 900
                 4445555555555555555555555555555555555555555554444444 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   5.2e-05     0.094       5      68 ..      12      76 ..      10     110 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.2e-05
  NAD_binding_7  5 lkgkkvlvvGgGe.vAarkvrklleagakvtvvapevkeeleelvklaeeelekd.legadlviaa 68
                   ++gk+v+v Gg + +++  ++kl+++ga+v++va++v ++le+  k+++++++k   ++++ + a 
     KKY16188.1 12 VTGKTVIVTGGSQgMGLGIAKKLASKGANVVIVAQNV-PKLENATKAISSCASKYqSQRFHYISAD 76
                   689999999987559*********************6.4455444444444332211122222222 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00015      0.27      29      78 ..       7      56 ..       3      59 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00015
                   HCT---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHC CS
  THF_DHG_CYH_C 29 etgielegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeitr 78
                   +++  ++gk+v+v G s+ +g  +a  L++k+a V ++ ++  +l++ t+
     KKY16188.1  7 KNKFLVTGKTVIVTGGSQGMGLGIAKKLASKGANVVIVAQNVPKLENATK 56
                   5677799********************************99999998876 PP

>> ISG65-75  Invariant surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  13.4   0.00046      0.83      61     149 ..     817     904 ..     805     910 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00046
    ISG65-75  61 dklayienakekvd.yyvekleslleeakekgtltesdaeklkkaceeAkaknkkarekakkalekaekaskkakeaakkAlGeeleeen 149
                 +k++ ++  ++k+d ++ ++ +++   ++++ +++e+d  ++kka+e+A +k +++++ka+ ++++a++a+  a+   + A G+e +e++
  KKY16188.1 817 HKIGKAAYLFSKIDdKKADEWRDMFGGNQADRKKKEED--EAKKAAEKARKKQADKERKAARKAAEAANAAAGATGVEASAKGDEVKESE 904
                 55666666667775245678888889887777777777..79999999999999999999999999999999999999999999777654 PP

>> TAF4  Transcription initiation factor TFIID component TAF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  12.3    0.0017       3.1     147     209 ..     844     907 ..     823     931 .. 0.55

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0017
        TAF4 147 aakdrskgedeeekklkaketakevqkeedekarhraANatAlaavg....eprkKkyswmsagsgs 209
                 ++ dr+k+e+ e kk+ +k ++k+  ++++e++  r+A ++A+aa+g    e++ K   + ++ ++ 
  KKY16188.1 844 NQADRKKKEEDEAKKAAEK-ARKK--QADKERKAARKAAEAANAAAGatgvEASAKGDEVKESEKKI 907
                 3345666666666665555.6655..55556666777777777777755564444444333333332 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  10.2    0.0028         5     399     448 ..     845     898 ..     797     921 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0028
                 HHHHT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--...........---- CS
       NARP1 399 eaksaelseaerkklrkkakkaekkaekeeaekaekekekk....aaekkakke 448
                 +a+ ++ +e+e kk+++ka+k+++ +e+++a+ka++ ++++      e++ak++
  KKY16188.1 845 QADRKKKEEDEAKKAAEKARKKQADKERKAARKAAEAANAAagatGVEASAKGD 898
                 233334445555555555555544444444443333333221111112222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (937 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1654  (0.0922528); expected 358.6 (0.02)
Passed bias filter:                     1018  (0.0567795); expected 358.6 (0.02)
Passed Vit filter:                       164  (0.00914719); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.09u 0.38s 00:00:01.47 Elapsed: 00:00:00.57
# Mc/sec: 4919.61
//
Query:       KKY16189.1  [L=636]
Description: putative sas10 utp3 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-26   92.8   8.1    1.4e-26   92.8   8.1    2.9  3  Sas10       Sas10 C-terminal domain
    9.6e-12   45.4   0.7    6.7e-11   42.7   0.0    2.8  3  Sas10_Utp3  Sas10/Utp3/C1D family


Domain annotation for each model (and alignments):
>> Sas10  Sas10 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         2   1.8e+04      23      36 ..      15      28 ..      11      29 .. 0.74
   2 ?   -0.4   0.8      0.18   1.7e+03      32      49 ..     347     364 ..     341     379 .. 0.72
   3 !   92.8   8.1   1.5e-30   1.4e-26       2      74 .]     560     636 .]     559     636 .] 0.94

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2
       Sas10 23 kenrnpRvkkrkkY 36
                k+  n+ v+ r kY
  KKY16189.1 15 KAPENSVVNARTKY 28
                55678888888888 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.18
       Sas10  32 krkkYekakkklksqvae 49 
                  + + +k++kk+ks+ + 
  KKY16189.1 347 AKAQPAKKQKKRKSKAER 364
                 566667888998888654 PP

  == domain 3  score: 92.8 bits;  conditional E-value: 1.5e-30
       Sas10   2 dgkRkityqIekNkGLtpkRkkenrnpRvkkrkkYekakkklksq..vaevk..keegkYsGektGIksnvvkSvkL 74 
                 dgkR i+y+I kNkGL+p+Rkk++rnpRvkkrkk++++ kkl++   ++++k  + +g+Y+Ge+tGI+++vv+SvkL
  KKY16189.1 560 DGKRGISYEIRKNKGLIPHRKKDVRNPRVKKRKKFDEKLKKLRGSgqRQVYKggEGRGGYGGETTGINRGVVRSVKL 636
                 8****************************************98644399999988899******************8 PP

>> Sas10_Utp3  Sas10/Utp3/C1D family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   7.4e-15   6.7e-11       1      86 [.     211     314 ..     211     314 .. 0.86
   2 ?   -1.8   0.1      0.58   5.2e+03       6      27 ..     379     401 ..     376     414 .. 0.70
   3 ?   -3.1   0.0       1.5   1.3e+04      17      46 ..     541     572 ..     525     573 .. 0.48

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 7.4e-15
  Sas10_Utp3   1 leslsksldelqeslepllskakaee.....kkslsd.....eklsegisllslKnelllaYllnlllylllklsg...........velkdhpvvkeL 78 
                 +e+l+ ++ +lq+++++l+ +a a+e         +      + +   +++  +K+++l+aYl  + +y +l +s+            el+dh v+ +L
  KKY16189.1 211 FEPLARDFLDLQPLHDELKLAAGAAEaitntR---KRkvdamDGQVSAVPVAVTKYQALSAYLGVIGMYFALLTSSaleksklpmapSELRDHAVIRSL 306
                 6899**************99966666665331...22467898889999********************66666669********************** PP

  Sas10_Utp3  79 vrlRvyle 86 
                 v++R+++e
  KKY16189.1 307 VQCRQLWE 314
                 *******8 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.58
  Sas10_Utp3   6 ksldelqeslepllskakaee.k 27 
                 + l+++++sl++l + ++a + k
  KKY16189.1 379 DRLEATEASLADLDKLVSARQpK 401
                 56888899999988876666543 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.5
  Sas10_Utp3  17 pllskakaeekkslsd.........eklsegisllslKn 46 
                 +l ++++a       +         ++ + gis++  Kn
  KKY16189.1 541 QLAASQNA-------HltnitetvgTDGKRGISYEIRKN 572
                 33332111.......112223345667777888876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1508  (0.0841095); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.51
# Mc/sec: 3739.77
//
Query:       KKY16190.1  [L=362]
Description: putative nuclear pore complex protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-16   59.5   2.4    0.00085   20.1   0.0    5.2  5  WD40         WD domain, G-beta repeat
    2.1e-08   34.4   0.0    7.5e-05   23.0   0.0    4.4  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0012   18.2   0.0     0.0018   17.7   0.0    1.2  1  WD40_like    WD40-like domain
  ------ inclusion threshold ------
      0.015   14.3   0.1       0.52    9.2   0.0    2.8  3  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
      0.079   11.6   0.1       0.31    9.6   0.1    1.9  2  Nup160       Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.1e-05     0.041      12      37 ..      35      60 ..      19      61 .. 0.88
   2 ?    5.2   0.0     0.012        42      11      35 ..      78     102 ..      71     105 .. 0.80
   3 !   20.1   0.0   2.4e-07   0.00085       7      38 .]     116     151 ..     110     151 .. 0.82
   4 ?   -0.8   0.0      0.95   3.4e+03      22      36 ..     174     188 ..     161     190 .. 0.78
   5 !   14.3   0.3   1.7e-05      0.06      12      38 .]     261     290 ..     242     290 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-05
                SEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40 12 svtslafspdgawlasGsdDgtvriW 37
                ++++l fsp  ++l+ +s+Dg+vri+
  KKY16190.1 35 GISDLMFSPAADFLSVASWDGKVRIY 60
                378888********99*********8 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.012
                 SSEEEEEEETTSSEEEEEETTSEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvr 35 
                 +++ + a+s dg+ +++++ D+  r
  KKY16190.1  78 KPILATAWSGDGQKVIAAGADNQAR 102
                 5677789*******98777799877 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 2.4e-07
                 EESS.SSEEEEE...EETTSSEEEEEETTSEEEEEE CS
        WD40   7 ltGH.ssvtsla...fspdgawlasGsdDgtvriWd 38 
                    H +++ +++    + + ++l++Gs+D+tv+ Wd
  KKY16190.1 116 VAQHdQPIKCVRfmdGPNNTPMLVTGSWDRTVKYWD 151
                 4579778999987778888888*************9 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.95
                 SSEEEEEETTSEEEE CS
        WD40  22 gawlasGsdDgtvri 36 
                 +++l+ G+ D+ + +
  KKY16190.1 174 NKLLVVGTADRYINV 188
                 456888999*99976 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 1.7e-05
                 S...EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 s...vtslafspdgawlasGsdDgtvriWd 38 
                 +   v+s++f+p +  +++++ Dgt ++Wd
  KKY16190.1 261 NvysVNSISFHPVHGTFSTAGSDGTFHFWD 290
                 0445999999999999986544*******9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   8.9e-05      0.32      38      69 ..      33      64 ..      26      72 .. 0.88
   2 !   23.0   0.0   2.1e-08   7.5e-05       2      90 ..      40     129 ..      39     131 .. 0.86
   3 ?    2.2   0.0     0.061   2.2e+02      49      69 ..     173     193 ..     149     252 .. 0.81
   4 ?    1.6   0.0     0.097   3.5e+02      40      90 ..     264     313 ..     255     315 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.9e-05
  ANAPC4_WD40 38 dsevrsLaWkpdgklLavaysdgevrlldaes 69
                 +  +++L+++p   +L va  dg+vr++++++
   KKY16190.1 33 EDGISDLMFSPAADFLSVASWDGKVRIYSVSE 64
                 567999***********************976 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 2.1e-08
  ANAPC4_WD40   2 swcptmDLiAlatedgellvfRlngqrvwtleed.kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                   ++p  D +++a+ dg+++++ ++ q   ++++    ++ + + aW+ dg+    a +d++ r+ld ++  +  +  +++++ ++c+ ++
   KKY16190.1  40 MFSPAADFLSVASWDGKVRIYSVSEQGANEGKAMiPGEKPILATAWSGDGQKVIAAGADNQARMLDLNTSITNVQQVAQHDQPIKCVRFM 129
                  699****************************555145678***************************9987765555666668***9986 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.061
  ANAPC4_WD40  49 dgklLavaysdgevrlldaes 69 
                  ++klL+v+++d  +++++  +
   KKY16190.1 173 KNKLLVVGTADRYINVVNLDE 193
                  578999999999888887654 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.097
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +v+s++++p    +  a sdg+ ++ d + ++ ++ ++     +++c g++
   KKY16190.1 264 SVNSISFHPVHGTFSTAGSDGTFHFWDGNAKHRLKGYPNVGG-TISCTGFN 313
                  7999**********************9999998888877666.47777765 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     5e-07    0.0018       7     110 ..      84     192 ..      78     210 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5e-07
   WD40_like   7 diskkgslilyGgkddkctvlklesl.esvsivesfedSvifvkllddd....lilvvtlDGtillslleneeevenekieedistvkviddklliGtn 100
                   s +g+ ++  g d+++++l+l++  + v+ v++ ++ +  v+++d+     +++ ++ D t+   +l+++    + + +e + t+++ ++ l++Gt 
  KKY16190.1  84 AWSGDGQKVIAAGADNQARMLDLNTSiTNVQQVAQHDQPIKCVRFMDGPnntpMLVTGSWDRTVKYWDLRQSTPAATLNCQERVYTMDIKNKLLVVGTA 182
                 567889999999***********987257999**************9644465666789**************************************** PP

   WD40_like 101 kGsiyvfskd 110
                    i v + d
  KKY16190.1 183 DRYINVVNLD 192
                 9999999888 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00015      0.52     177     224 ..      23      70 ..       5      75 .. 0.76
   2 ?    2.4   0.0     0.018        63     179     251 ..      69     136 ..      63     177 .. 0.73
   3 ?   -1.2   0.0      0.21   7.6e+02     189     215 ..     264     290 ..     217     298 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00015
    Ge1_WD40 177 ieegllkieehsliveaafspdGtalatasedGevkffqvyledeeep 224
                  +++ l+   +  i++ +fsp    l++as dG+v+ + v  ++++e 
  KKY16190.1  23 SKDVALNNPPEDGISDLMFSPAADFLSVASWDGKVRIYSVSEQGANEG 70 
                 44455555555569999**********************998877765 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.018
    Ge1_WD40 179 egllkieehsliveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGkslssllfldnhkees 251
                 eg   i  +  i  +a+s dG  + +a +d + ++  ++ + ++ +    +   hd +++ ++ f+d  ++++
  KKY16190.1  69 EGKAMIPGEKPILATAWSGDGQKVIAAGADNQARMLDLNTSITNVQ----QVAQHD-QPIKCVRFMDGPNNTP 136
                 5666677777899999**************9999988877644433....334454.6777777777766655 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.21
    Ge1_WD40 189 liveaafspdGtalatasedGevkffq 215
                  + + +f p   + +ta +dG+ +f+ 
  KKY16190.1 264 SVNSISFHPVHGTFSTAGSDGTFHFWD 290
                 466667778778899999999999996 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.11   4.1e+02     228     249 ..      39      64 ..       2      67 .. 0.70
   2 ?    9.6   0.1   8.5e-05      0.31     226     286 ..     126     192 ..      99     266 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.11
                 .....TTTEEEEEETT-EEEEEETTT CS
      Nup160 228 i....gqtylfalsrdgkLrvWnllt 249
                      + ++l ++s dgk+r+ +++ 
  KKY16190.1  39 LmfspAADFLSVASWDGKVRIYSVSE 64 
                 24445789999**********99975 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 8.5e-05
                 ........TTTEEEEEETT-EEEEEETTTTEEEEEEE--.-SSSTTS--SSEESEEESSSSEEEE... CS
      Nup160 226 vei.....gqtylfalsrdgkLrvWnlltgkclatidllrdeeaqdessskstldpaesslirvs..d 286
                 v+      +  +l++ s d++++ W+l+  +++at +++ +++ +++ + k+ ++ + + +i v+  d
  KKY16190.1 126 VRFmdgpnNTPMLVTGSWDRTVKYWDLRQSTPAATLNCQ-ERVYTMDIKNKLLVVGTADRYINVVnlD 192
                 5555555566799999***********************.5666666666655555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.57
# Mc/sec: 1928.29
//
Query:       KKY16191.1  [L=604]
Description: putative translation initiation factor rli1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-33  116.0   0.0    2.1e-15   57.4   0.0    2.4  2  ABC_tran         ABC transporter
      3e-14   52.6   5.5      3e-14   52.6   5.5    1.9  1  RLI              Possible Fer4-like domain in RNase L inhibit
    6.3e-11   42.6   3.3      0.095   12.5   0.0    4.2  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    1.2e-10   41.3   2.4     0.0027   17.2   0.0    4.0  4  SMC_N            RecF/RecN/SMC N terminal domain
    1.6e-05   25.2   0.0     0.0035   17.6   0.0    2.5  2  AAA_22           AAA domain
      4e-05   23.2   2.8      4e-05   23.2   2.8    2.7  3  Fer4             4Fe-4S binding domain
    4.2e-05   24.0   0.0      0.079   13.3   0.0    2.4  2  AAA_16           AAA ATPase domain
    6.3e-05   23.4   0.1       0.11   12.9   0.1    2.5  2  AAA              ATPase family associated with various cellul
    8.9e-05   22.4   0.2        0.2   11.3   0.0    3.0  3  AAA_15           AAA ATPase domain
    0.00011   22.2   8.8     0.0049   16.9   0.1    2.4  2  Fer4_10          4Fe-4S dicluster domain
    0.00012   22.1   0.2       0.02   14.8   0.0    2.8  3  Rad17            Rad17 P-loop domain
     0.0002   21.3   0.1       0.75    9.7   0.0    2.5  2  RsgA_GTPase      RsgA GTPase
     0.0004   19.2   0.0    0.00096   17.9   0.0    1.6  1  AAA_13           AAA domain
    0.00063   19.5   0.3       0.16   11.7   0.1    2.5  2  AAA_24           AAA domain
    0.00065   20.2   0.1        1.2    9.7   0.0    2.7  2  AAA_18           AAA domain
      0.001   18.8   0.6       0.59    9.9   0.0    2.5  2  AAA_29           P-loop containing region of AAA domain
     0.0018   18.5   0.0       0.34   11.1   0.0    2.5  2  AAA_33           AAA domain
     0.0018   18.4  11.6     0.0037   17.4  11.6    1.5  1  Fer4_21          4Fe-4S dicluster domain
      0.002   18.5   0.2        1.7    9.0   0.0    3.2  2  RNA_helicase     RNA helicase
     0.0047   16.9  12.6       0.01   15.9   2.4    2.4  2  Fer4_6           4Fe-4S binding domain
     0.0049   17.4   0.2        1.3    9.5   0.3    2.5  2  AAA_23           AAA domain
     0.0076   15.5   0.1       0.39    9.9   0.0    2.3  2  NB-ARC           NB-ARC domain
     0.0081   16.4   0.1        1.4    9.1   0.0    2.5  2  AAA_28           AAA domain
     0.0082   15.8   3.0        0.2   11.3   0.1    2.3  2  SRP54            SRP54-type protein, GTPase domain
  ------ inclusion threshold ------
      0.014   15.4   0.2       0.18   11.8   0.1    2.4  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.018   14.9   2.0       0.96    9.4   0.0    2.4  2  NACHT            NACHT domain
      0.031   14.4   0.5        5.5    7.1   0.0    2.7  2  MMR_HSR1         50S ribosome-binding GTPase
      0.031   13.9   0.5        9.4    5.9   0.0    3.0  3  Thymidylate_kin  Thymidylate kinase
      0.048   13.7   0.2        2.8    8.0   0.0    2.6  2  AAA_5            AAA domain (dynein-related subfamily)
      0.057   13.1   0.4        4.1    7.1   0.0    2.4  2  AAA_30           AAA domain
      0.074   12.6   0.5        1.3    8.5   0.1    2.3  2  AAA_7            P-loop containing dynein motor region
      0.078   13.9   0.3      0.078   13.9   0.3    2.6  2  Fer4_16          4Fe-4S double cluster binding domain
      0.094   12.4   0.0        6.1    6.5   0.0    2.4  2  VirE             Virulence-associated protein E
      0.099   12.8  12.0       0.21   11.8  12.0    1.6  1  Fer4_9           4Fe-4S dicluster domain
        0.1   11.9   0.0       0.24   10.7   0.0    1.6  1  DnaB_C           DnaB-like helicase C terminal domain
       0.14   11.4   0.2       0.33   10.3   0.2    1.5  1  ATPase           KaiC
       0.15   11.8   1.9       0.24   11.1   0.1    2.2  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
       0.15   12.7  12.0       0.78   10.4  12.3    2.0  2  Fer4_7           4Fe-4S dicluster domain
       0.56   10.2   1.9         17    5.5   0.1    3.2  2  AAA_14           AAA domain
        1.8    8.8  10.2       0.22   11.7   1.3    2.6  2  Fer4_2           4Fe-4S binding domain
        4.8    7.7  10.8       0.97    9.9   1.8    2.3  2  Fer4_8           4Fe-4S dicluster domain
        6.9    7.3  10.7       0.24   12.0   1.0    2.4  2  Fer4_17          4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   4.9e-18   2.1e-15      10     136 ..     102     247 ..     100     248 .. 0.72
   2 !   56.1   0.0   1.3e-17   5.5e-15       8     137 .]     372     493 ..     369     493 .. 0.86

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 4.9e-18
                 TTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE...........EETTCEGGGB-HHHCCHCEEEE-SS...--S-TTSBHHHH......HHHTC...H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx......xxxxx...x RF
    ABC_tran  10 egekvaivGenGaGKStLlkllagllkpteGei...........lldgkdlkeqeleslrkeigvlpqe...pqlfpeltvren......esdee...i 85 
                 +g+++++vG nG GKSt lk+l+g+lkp+ G+             ++g +l++  +++l+  ++ + +    +ql + ++++++      +++++   +
  KKY16191.1 102 PGQVLGLVGTNGIGKSTALKILSGKLKPNLGRYdnppdweeilkYFRGSELQNYFTKVLEDDLKAVVKPqyvDQLPKAVKAADKsvktliKARSQlgnL 200
                 89*****************************99666666666655556666664444444444333222123444444444443666666333335558 PP

                 HHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +++++ l+l+++kd+ +      LSgG+ qr a+  + +++++++++DEp+
  KKY16191.1 201 DHIMNVLELDQVKDRDI----GLLSGGELQRFAIGLVCVQQADVYMFDEPS 247
                 88888888888888888....*****************************7 PP

  == domain 2  score: 56.1 bits;  conditional E-value: 1.3e-17
                 EETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHHHHHTCHHHHHHHSTTGGTTCBGESTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvrenesdeeiekalsklglkelkdtvvkssp 106
                 +  +e+++++GenG+GK+t++++lag +kp  G+ ++ + ++++++ +++ k  g++ q   +f++++ +   s +  +++ + l+l+++ d+ v    
  KKY16191.1 372 FTDSEIIVMMGENGTGKTTFCRMLAGAEKP-DGTTRVPQLNISMKPQKITPKFTGTVRQL--FFKKIK-AAFLSPQFQTDVYKPLKLDDFIDQEV---- 462
                 66799***********************98.79998999999999999999999999998..555552.22355555778888999999999999.... PP

                 GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 107 ssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++LSgG+ qrva++ al   ++++l+DEp+a
  KKY16191.1 463 QNLSGGELQRVAIVLALGIPADIYLIDEPSA 493
                 *****************************75 PP

>> RLI  Possible Fer4-like domain in RNase L inhibitor, RLI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   5.5   6.9e-17     3e-14       1      35 []       6      37 ..       6      37 .. 0.96

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 6.9e-17
                --EEEES---------TTHHHHHTTSEEEESS--S CS
         RLI  1 mrlAivdadqCdPKKCtgkkcarfcpvrlvrtgkk 35
                +r+Aiv+ d+C+PKKC++ +c+++cpv  vrtgk+
  KKY16191.1  6 TRIAIVNSDKCKPKKCRQ-ECKKSCPV--VRTGKL 37
                59****************.********..****95 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   1.7   0.00053      0.23       3      21 ..     107     125 ..     105     151 .. 0.78
   2 !   12.5   0.0   0.00022     0.095     194     282 ..     182     266 ..     126     274 .. 0.67
   3 !    7.4   0.0    0.0077       3.3       2      46 ..     378     416 ..     377     425 .. 0.73
   4 !    8.1   0.0    0.0049       2.1     233     276 ..     461     501 ..     421     522 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00053
      AAA_21   3 vliGpNgsGKSnLLdaldl 21 
                 +l+G Ng GKS+ L++l++
  KKY16191.1 107 GLVGTNGIGKSTALKILSG 125
                 79***************75 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00022
      AAA_21 194 lveielsdlgegeeliasvderlrer...............gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHP....k 273
                  ++                      +                +  le ++ +++++  lS G ++ +a+ + + +++   +++ +DEp + L+     +
  KKY16191.1 182 AADKS--------------------VktlikarsqlgnldhIMNVLELDQVKDRDIGLLSGGELQRFAIGLVCVQQA---DVYMFDEPSSYLDVkqrlA 257
                 22222....................22222223444556669999999999************************99...9*************66555 PP

      AAA_21 274 llrrllell 282
                 + r++ ell
  KKY16191.1 258 AARTIRELL 266
                 558888877 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0077
      AAA_21   2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkip 46 
                  v+ G Ng+GK+++ + l      ++  +++++++ +  +i++ p
  KKY16191.1 378 IVMMGENGTGKTTFCRML------AGAEKPDGTTRVPQLNISMKP 416
                 6889**********9999......555666666666666666555 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.0049
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllr 276
                  + +lS G ++  a+++al   +   +++liDEp + L+ +   
  KKY16191.1 461 EVQNLSGGELQRVAIVLALGIPA---DIYLIDEPSAYLDSEQRI 501
                 46788999999999999999999...************985553 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.11        49      13      41 ..      92     120 ..      87     129 .. 0.78
   2 !   14.3   0.1   4.9e-05     0.021     134     202 ..     217     282 ..     142     296 .. 0.76
   3 ?    3.5   0.0     0.098        42      23      41 ..     374     392 ..     367     396 .. 0.83
   4 !   17.2   0.0   6.2e-06    0.0027     135     194 ..     447     521 ..     400     535 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.11
                 EECEEEEEETTSSEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  13 yagktvilpfsksftaivGpNGSGKsnll 41 
                 ++ ++  +p   ++  +vG NG GKs  l
  KKY16191.1  92 FKLHRLPMPRPGQVLGLVGTNGIGKSTAL 120
                 55556666666778889*********765 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 4.9e-05
                 TTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
       SMC_N 134 kelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreeml 202
                 + lLSgGe +  a+ L+     v++a +y++De  + LD k++ + a+ ++e       +iv+ ++  +l
  KKY16191.1 217 IGLLSGGELQRFAIGLV----CVQQADVYMFDEPSSYLDVKQRLAAARTIRELLRPdDYVIVVEHDLSVL 282
                 348**********9999....678888************************9765426677777766555 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.098
                 TSSEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  23 sksftaivGpNGSGKsnll 41 
                 ++++ +++G+NG GK+ ++
  KKY16191.1 374 DSEIIVMMGENGTGKTTFC 392
                 45678999*******9875 PP

  == domain 4  score: 17.2 bits;  conditional E-value: 6.2e-06
                 T................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH...HHCTTSEEEE CS
                 x................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx RF
       SMC_N 135 e................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk...eksknaQfiv 194
                 +                +LSgGe + va+ L + i    pa +yl+De  a LD +++   a+++k    +sk++ fiv
  KKY16191.1 447 DvykplklddfidqevqNLSGGELQRVAIVLALGI----PADIYLIDEPSAYLDSEQRITAARVIKrfiMHSKKTAFIV 521
                 155555555555555559*****877766666655....999********************99995545677777776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.069        29       6      29 ..     104     127 ..     101     141 .. 0.83
   2 !   17.6   0.0   8.1e-06    0.0035       6      87 ..     376     467 ..     373     521 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.069
      AAA_22   6 gilvvtGesGtGKTtllrrlleql 29 
                 ++l ++G  G+GK+t l+ l  +l
  KKY16191.1 104 QVLGLVGTNGIGKSTALKILSGKL 127
                 566799**********99876665 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 8.1e-06
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee.erpevv.......fvtlpsstsskdl.lrellralglelka....erlsseell.ealeqalr 87 
                  i+v +Ge GtGKTt +r+l+   +    ++   r++++       ++t++  ++ ++l ++++  a+ +++      ++l++++++ + +++ + 
  KKY16191.1 376 EIIVMMGENGTGKTTFCRMLAGAEK----PDGtTRVPQLnismkpqKITPKFTGTVRQLfFKKIKAAFLSPQFQtdvyKPLKLDDFIdQEVQNLSG 467
                 6899*****************9974....3334333333444556677777777888887999999999998888888777777777444444443 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       6.9   2.9e+03       2       8 ..      10      16 ..       9      17 .. 0.85
   2 ?   -0.5   0.6         3   1.3e+03      13      20 ..      24      31 ..      23      32 .. 0.88
   3 !   23.2   2.8   9.5e-08     4e-05       2      23 ..      49      70 ..      48      71 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 6.9
                EEETTTS CS
        Fer4  2 videekC 8 
                +++ +kC
  KKY16191.1 10 IVNSDKC 16
                799**** PP

  == domain 2  score: -0.5 bits;  conditional E-value: 3
                HHHHHSTT CS
        Fer4 13 aCvevCPv 20
                +C + CPv
  KKY16191.1 24 ECKKSCPV 31
                69*****8 PP

  == domain 3  score: 23.2 bits;  conditional E-value: 9.5e-08
                EEETTTSSS-THHHHHSTTTEE CS
        Fer4  2 videekCigCGaCvevCPvgAI 23
                +i e +CigCG+C + CP+gAI
  KKY16191.1 49 YISERLCIGCGICPKKCPFGAI 70
                79999****************9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0064       2.8      16      51 ..      94     130 ..      91     275 .. 0.77
   2 !   13.3   0.0   0.00019     0.079      24     129 ..     375     513 ..     364     539 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0064
      AAA_16  16 lervrsgrp.elvllsGesGvGKsslvrellralekd 51 
                 l+r+ ++rp +++ l+G  G+GKs+ ++ l   l+ +
  KKY16191.1  94 LHRLPMPRPgQVLGLVGTNGIGKSTALKILSGKLKPN 130
                 78889999989999***********998887777776 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.00019
      AAA_16  24 pelvllsGesGvGKsslvrellralekdg.gif....lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala........... 106
                 +e+++  Ge G+GK++  r+l+ a + dg   +    ++ k ++    +p   ++ +  r  ++++++++    + +++++   + l+           
  KKY16191.1 375 SEIIVMMGENGTGKTTFCRMLAGAEKPDGtTRVpqlnISMKPQKI---TPK--FTGTV-RQLFFKKIKAA---FLSPQFQTDVYKPLKlddfidqevqn 464
                 38999*****************77777742223343444444444...222..22222.21222222222...12222222222222244444453334 PP

      AAA_16 107 ..........................avpelagaeasrllellkrllal 129
                                           +++ l+++++   ++++kr+++ 
  KKY16191.1 465 lsggelqrvaivlalgipadiylidePSAYLDSEQRITAARVIKRFIMH 513
                 5555555666666666666666666666666666666666666666654 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0087       3.7       3      49 ..     108     167 ..     106     220 .. 0.62
   2 !   12.9   0.1   0.00027      0.11       2      33 ..     379     414 ..     378     444 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0087
                 EESSTTSSHHHHHHHHHHHHTHE.............EEEEETTTCSSSSTTHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakelgve.............fleisgsellskyvgesekkirel 49 
                 l+G+ G+GK+++ k +  +l+ +             +  + gsel + + +  e++++++
  KKY16191.1 108 LVGTNGIGKSTALKILSGKLKPNlgrydnppdweeiLKYFRGSELQNYFTKVLEDDLKAV 167
                 89*****************98664444555555555444444444444333333333333 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00027
                 EEESSTTSSHHHHHHHHHHHHT....HEEEEEETTT CS
         AAA   2 llyGppGtGKTllakavakelg....vefleisgse 33 
                 +++G  GtGKT++++ +a   +    +++ +++ s 
  KKY16191.1 379 VMMGENGTGKTTFCRMLAGAEKpdgtTRVPQLNISM 414
                 689***************995333333333333332 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00046       0.2      28      44 ..     108     124 ..     100     194 .. 0.80
   2 !    7.3   0.1    0.0081       3.5      23      43 ..     375     395 ..     370     456 .. 0.87
   3 ?   -1.0   0.0       2.7   1.1e+03     324     337 ..     483     496 ..     479     523 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00046
      AAA_15  28 liGkNnsGKSsileald 44 
                 l+G+N++GKS++l++l 
  KKY16191.1 108 LVGTNGIGKSTALKILS 124
                 8**************94 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0081
      AAA_15  23 eeltvliGkNnsGKSsileal 43 
                 +e+ v  G+N++GK+++ ++l
  KKY16191.1 375 SEIIVMMGENGTGKTTFCRML 395
                 349999***********9988 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 2.7
      AAA_15 324 nvilliEEPEahLH 337
                  +i+li+EP a+L 
  KKY16191.1 483 ADIYLIDEPSAYLD 496
                 689********995 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.2     0.012         5       2      21 ..       9      31 ..       8      46 .. 0.81
   2 !   16.9   0.1   1.2e-05    0.0049       3      23 ..      49      69 ..      47      95 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.012
     Fer4_10  2 vvidddtC..irCg.kCvkaCPa 21
                +++++d+C   +C+ +C+k+CP+
  KKY16191.1  9 AIVNSDKCkpKKCRqECKKSCPV 31
                578999**6669*99*******9 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.2e-05
     Fer4_10  3 vidddtCirCgkCvkaCPadl 23
                +i +  Ci+Cg C k CP+ +
  KKY16191.1 49 YISERLCIGCGICPKKCPFGA 69
                788899************955 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.8e-05      0.02      43      82 ..     101     140 ..      90     160 .. 0.86
   2 ?   -1.1   0.0       3.7   1.6e+03     122     170 ..     157     204 ..     143     215 .. 0.71
   3 ?    3.9   0.0      0.11        45      46     125 ..     376     465 ..     369     516 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.8e-05
       Rad17  43 rkkriLLisGPsGCgkstvvkvLskelgiklrewlnpvsl 82 
                 r+ ++L + G  G gkst++k+Ls +l ++l  + np   
  KKY16191.1 101 RPGQVLGLVGTNGIGKSTALKILSGKLKPNLGRYDNPPDW 140
                 56789**************************999999765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 3.7
       Rad17 122 lqklGddlrtdkklilvedlPnkfyrdsdalrevirkylrssealplil 170
                  + l ddl++  k  +v++lP   +   ++++ +i+   + ++    i+
  KKY16191.1 157 TKVLEDDLKAVVKPQYVDQLPKAVKAADKSVKTLIKARSQLGNL-DHIM 204
                 44567999999999999999999999999999988765554443.4455 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.11
       Rad17  46 riLLisGPsGCgkstvvkvLskelgiklrewlnpvslkepdnqks.dfkgltekesrf..........lsqiesfkeleLkdakylklqkl 125
                 +i+++ G  G gk+t  ++L+    ++    +  +++   + + +  f g + +   f          + q +++k l+L d   + +q l
  KKY16191.1 376 EIIVMMGENGTGKTTFCRMLAGAEKPDGTTRVPQLNISMKPQKITpKFTGTVRQLF-FkkikaaflspQFQTDVYKPLKLDDFIDQEVQNL 465
                 59999***************977666655555555544433332213333332211.2222333455555777777777777666666655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0029       1.2      89     125 ..      93     129 ..      71     136 .. 0.75
   2 !    9.7   0.0    0.0017      0.75      98     123 ..     374     399 ..     356     426 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0029
                  THHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  89 gleelkellkdktsvlvGqSGvGKStLinallpelel 125
                  +l++l     +++  lvG  G+GKSt ++ l ++l+ 
   KKY16191.1  93 KLHRLPMPRPGQVLGLVGTNGIGKSTALKILSGKLKP 129
                  555555566678999**************99998765 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0017
                  TTSEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpel 123
                  +++++v++G+ G GK+t+  +l++ +
   KKY16191.1 374 DSEIIVMMGENGTGKTTFCRMLAGAE 399
                  4589******************9864 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.3e-06   0.00096      21      76 ..     380     463 ..     373     480 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.3e-06
      AAA_13  21 iYGwNGaGKTtLSrllrslelgetepkfangsieitnge........................eldirVfN....rdFveenls 76 
                 + G NG+GKTt++r+l+  e+    ++ ++ +i+++ ++                        ++++ V+     +dF++++++
  KKY16191.1 380 MMGENGTGKTTFCRMLAGAEKPDGTTRVPQLNISMKPQKitpkftgtvrqlffkkikaaflspQFQTDVYKplklDDFIDQEVQ 463
                 679*****************9999999999999887776556666666666666666677766667777754444567776555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.033        14       4      22 ..     105     123 ..     103     147 .. 0.86
   2 !   11.7   0.1   0.00037      0.16       5      22 ..     378     395 ..     375     404 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.033
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                  + ++G +giGK+t +k l
  KKY16191.1 105 VLGLVGTNGIGKSTALKIL 123
                 57899*********99977 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00037
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 i+++G++g+GKTt++++l
  KKY16191.1 378 IVMMGENGTGKTTFCRML 395
                 899************998 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0027       1.2       3      66 ..     108     193 ..     106     235 .. 0.65
   2 ?    7.8   0.0     0.011       4.7       1      19 [.     378     396 ..     378     435 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0027
      AAA_18   3 ltGtpGvGKttlakeLskrl.gf.....................gvnlrdvakenglllevdpealdeskrldedkldklldalee 66 
                 l Gt G GK+t  k Ls +l  +                      +n+   + e++l   v p+ +d+  ++++  ++++ +++++
  KKY16191.1 108 LVGTNGIGKSTALKILSGKLkPNlgrydnppdweeilkyfrgseLQNYFTKVLEDDLKAVVKPQYVDQLPKAVKAADKSVKTLIKA 193
                 89**************9998545677788888555555555333333333344444444444445555555555555555555555 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.011
      AAA_18   1 IlltGtpGvGKttlakeLs 19 
                 I+ +G  G+GKtt+++ L+
  KKY16191.1 378 IVMMGENGTGKTTFCRMLA 396
                 6778999*********996 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0014      0.59      12      39 ..      92     120 ..      87     129 .. 0.87
   2 ?    6.5   0.1     0.017       7.1      22      38 ..     375     391 ..     366     394 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0014
      AAA_29  12 fdghtieidlkg.atlltGpsGsGKSTll 39 
                 f+ h++++ + g +  l+G++G GKST l
  KKY16191.1  92 FKLHRLPMPRPGqVLGLVGTNGIGKSTAL 120
                 7778999999998888***********76 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.017
      AAA_29  22 kgatlltGpsGsGKSTl 38 
                 +++++++G++G+GK+T+
  KKY16191.1 375 SEIIVMMGENGTGKTTF 391
                 457899**********7 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.058        25       4      24 ..     108     128 ..     105     199 .. 0.79
   2 !   11.1   0.0    0.0008      0.34       2      26 ..     378     405 ..     377     447 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.058
      AAA_33   4 lvGlpGsGKstlaerllkklg 24 
                 lvG +G GKst ++ l  kl+
  KKY16191.1 108 LVGTNGIGKSTALKILSGKLK 128
                 89**********998887776 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0008
      AAA_33   2 vllvGlpGsGKstlaerllkklg...av 26 
                 +++ G +G+GK+t+ + l+ +++   ++
  KKY16191.1 378 IVMMGENGTGKTTFCRMLAGAEKpdgTT 405
                 89**************998776654444 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4  11.6   8.6e-06    0.0037       1      58 [.       9      71 ..       9      72 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 8.6e-06
     Fer4_21  1 AridedkCi..gC.gkCliaCe..dtshqaieidaktvlkvv.edeCvGCnlCssvCPvedcie 58
                A++++dkC   +C ++C ++C+   t+  +ie++++++++++ e  C+GC +C + CP  ++i+
  KKY16191.1  9 AIVNSDKCKpkKCrQECKKSCPvvRTGKLCIEVSPEAKIAYIsERLCIGCGICPKKCPF-GAIH 71
                67788888433673368888873347899*****999998874779************7.8886 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0      0.04        17       3      25 ..     108     130 ..     106     164 .. 0.84
   2 !    9.0   0.0    0.0041       1.7       1      19 [.     378     396 ..     378     412 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.04
  RNA_helicase   3 lyGpsgeGKStlakeLakallkk 25 
                   l+G +g+GKSt+ k L+ +l  +
    KKY16191.1 108 LVGTNGIGKSTALKILSGKLKPN 130
                   78************998887654 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0041
  RNA_helicase   1 iwlyGpsgeGKStlakeLa 19 
                   i++ G++g+GK+t+++ La
    KKY16191.1 378 IVMMGENGTGKTTFCRMLA 396
                   6899************987 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.7     0.029        12       2      20 ..       9      30 ..       8      35 .. 0.87
   2 !   15.9   2.4   2.4e-05      0.01       2      24 .]      48      70 ..      47      70 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.029
      Fer4_6  2 veidpdkCi..gCgd.CvrvCP 20
                + ++ dkC    C+  C + CP
  KKY16191.1  9 AIVNSDKCKpkKCRQeCKKSCP 30
                6799****9888*888****** PP

  == domain 2  score: 15.9 bits;  conditional E-value: 2.4e-05
      Fer4_6  2 veidpdkCigCgdCvrvCPegai 24
                + i + +CigCg C + CP+gai
  KKY16191.1 48 AYISERLCIGCGICPKKCPFGAI 70
                678899****************8 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0      0.06        26      24      39 ..     108     123 ..     101     265 .. 0.82
   2 !    9.5   0.3     0.003       1.3      18      37 ..     374     393 ..     360     398 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.06
      AAA_23  24 ItGpNGaGKTTildAi 39 
                 ++G NG GK+T l  +
  KKY16191.1 108 LVGTNGIGKSTALKIL 123
                 79*********99766 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.003
      AAA_23  18 skgltlItGpNGaGKTTild 37 
                 ++ + +  G+NG+GKTT+ +
  KKY16191.1 374 DSEIIVMMGENGTGKTTFCR 393
                 6789999**********866 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00092      0.39      17      95 ..     101     185 ..      92     214 .. 0.73
   2 ?    2.9   0.1      0.12        51      19      38 ..     374     393 ..     368     400 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00092
                 TSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCCCBT.EEEEEEEESXXHHHHHHHXXHHHHHCCCTTSSSS-STTS......HHHH CS
      NB-ARC  17 elqslvvalvGmgGvGKttlakqilnksdevegrFd.svawvvvsktdkseeiletilkeLslseddleekeeves......lkrk 95 
                  ++  v++lvG  G+GK+t +k    k++   gr+d    w  + k +  +e+++   k+L++  +   + + v++      +++k
  KKY16191.1 101 RPG-QVLGLVGTNGIGKSTALKILSGKLKPNLGRYDnPPDWEEILKYFRGSELQNYFTKVLEDDLKAVVKPQYVDQlpkavkAADK 185
                 555.69*************99999999999999**966789999999999999999999997766665555555545555554444 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.12
                 CSEEEEEEESTTSSHHHHHH CS
      NB-ARC  19 qslvvalvGmgGvGKttlak 38 
                 +s ++ ++G  G GKtt  +
  KKY16191.1 374 DSEIIVMMGENGTGKTTFCR 393
                 455999***********865 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.078        33       4      20 ..     108     124 ..     106     143 .. 0.88
   2 !    9.1   0.0    0.0033       1.4       2      24 ..     378     404 ..     377     414 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.078
      AAA_28   4 itGgestGKTtlleaLa 20 
                 ++G+ + GK+t l+ L+
  KKY16191.1 108 LVGTNGIGKSTALKILS 124
                 68************998 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0033
      AAA_28   2 ivitGgestGKTtlleaLaar....gy 24 
                 iv++G  +tGKTt ++ La      g+
  KKY16191.1 378 IVMMGENGTGKTTFCRMLAGAekpdGT 404
                 899***************943235555 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.5     0.053        22       3      25 ..     105     127 ..     103     133 .. 0.81
   2 !   11.3   0.1   0.00046       0.2       2      24 ..     376     398 ..     375     407 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.053
                 EEEEEESTTSSHHHHHHHHHHHH CS
       SRP54   3 villvGlqGaGKTttlaKLaall 25 
                 v+ lvG++G+GK t+l  L+ +l
  KKY16191.1 105 VLGLVGTNGIGKSTALKILSGKL 127
                 5679**********998777665 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00046
                 EEEEEEESTTSSHHHHHHHHHHH CS
       SRP54   2 nvillvGlqGaGKTttlaKLaal 24 
                 ++i+++G +G+GKTt +  La  
  KKY16191.1 376 EIIVMMGENGTGKTTFCRMLAGA 398
                 589**************999965 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       1.2     5e+02      18      42 ..      99     126 ..      80     135 .. 0.76
   2 ?   11.8   0.1   0.00042      0.18      19      42 ..     375     398 ..     357     412 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 1.2
                 H...TEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE  18 l...gdvilLeGdLGaGKTtlvrglaka 42 
                 +   g+v+ L G  G GK+t  + l  +
  KKY16191.1  99 MprpGQVLGLVGTNGIGKSTALKILSGK 126
                 145578899***********99877655 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00042
                 TEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglaka 42 
                 +++i++ G+ G+GKTt++r la a
  KKY16191.1 375 SEIIVMMGENGTGKTTFCRMLAGA 398
                 5689***************99865 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.6     0.066        28       3      24 ..     106     127 ..     104     132 .. 0.82
   2 ?    9.4   0.0    0.0022      0.96       2      22 ..     377     397 ..     376     435 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.066
                 EEEEC-TTTCHHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklalaw 24 
                 + l G +G+GK+t l+ l  ++
  KKY16191.1 106 LGLVGTNGIGKSTALKILSGKL 127
                 5689**********99887665 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0022
                 CEEEEC-TTTCHHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqklal 22 
                 ++++ Ge+G GKTt+ + la 
  KKY16191.1 377 IIVMMGENGTGKTTFCRMLAG 397
                 58999**********998875 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.4      0.08        34       3      22 ..     107     126 ..     105     136 .. 0.84
   2 ?    7.1   0.0     0.013       5.5       2      40 ..     378     412 ..     377     536 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.08
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 ++vG    GKSt ++ l+g+
  KKY16191.1 107 GLVGTNGIGKSTALKILSGK 126
                 89*************99997 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.013
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegr 40 
                 ++ +G   +GK+t+ + l g+    ++  gtTr ++   
  KKY16191.1 378 IVMMGENGTGKTTFCRMLAGA----EKPDGTTRVPQLNI 412
                 6889**************995....45556666665443 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.022       9.4       3      47 ..     110     152 ..     108     195 .. 0.84
   2 ?   -1.9   0.0       5.2   2.2e+03      63      95 ..     253     284 ..     241     287 .. 0.79
   3 ?    4.8   0.1     0.047        20       3      18 ..     382     397 ..     381     409 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.022
                      ESTTSSHHHHHHHHHHHHHHTTE.EEEESSSTTSHHHHHHHHHHH CS
  Thymidylate_kin   3 GlDGaGKttqaellkerlkeegikvvltrepggteiGekirelll 47 
                      G +G GK+t +++l  +lk +  +     +p+  ei + +r++ l
       KKY16191.1 110 GTNGIGKSTALKILSGKLKPNLGR--YDNPPDWEEILKYFRGSEL 152
                      899***************999865..6677776776666666655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 5.2
                      HHHHHTTHHHHHHHHHTT-EEEEES-HHHHHHH CS
  Thymidylate_kin  63 adriehleekikpalkqgktvivdRylfSslaY 95 
                      ++r  ++++ i + l  ++ viv  + +S+l Y
       KKY16191.1 253 KQR-LAAARTIRELLRPDDYVIVVEHDLSVLDY 284
                      455.66678899999999999999999998877 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.047
                      ESTTSSHHHHHHHHHH CS
  Thymidylate_kin   3 GlDGaGKttqaellke 18 
                      G +G+GKtt++++l+ 
       KKY16191.1 382 GENGTGKTTFCRMLAG 397
                      668**********985 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.24     1e+02       4      26 ..     108     130 ..     106     142 .. 0.82
   2 ?    8.0   0.0    0.0065       2.8       2      41 ..     378     419 ..     377     429 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.24
                 EE--SSSSHHHHHHHGGGGBS-- CS
       AAA_5   4 LvGppGtgKselaerlaaalnre 26 
                 LvG  G+gKs+  + l+  l+ +
  KKY16191.1 108 LVGTNGIGKSTALKILSGKLKPN 130
                 9***********99999888544 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0065
                 EEEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--HHHH CS
       AAA_5   2 vlLvGppGtgKselaerlaaal..nreveyvqltrdtteedl 41 
                 +++ G+ GtgK+++ + la a     ++ + ql+ +++++++
  KKY16191.1 378 IVMMGENGTGKTTFCRMLAGAEkpDGTTRVPQLNISMKPQKI 419
                 5899**************998877777777777777777766 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1      0.11        48      19      39 ..     104     124 ..      99     134 .. 0.84
   2 ?    7.1   0.0    0.0097       4.1      19      43 ..     376     400 ..     370     415 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.11
      AAA_30  19 rvavltGpAGtGKttalkalr 39 
                 +v  l+G  G GK+talk l 
  KKY16191.1 104 QVLGLVGTNGIGKSTALKILS 124
                 68889************9875 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0097
      AAA_30  19 rvavltGpAGtGKttalkalreawe 43 
                  + v+ G  GtGKtt  + l+ a +
  KKY16191.1 376 EIIVMMGENGTGKTTFCRMLAGAEK 400
                 38899***********999987765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.38   1.6e+02      38      58 ..     108     128 ..      91     135 .. 0.85
   2 ?    8.5   0.1    0.0031       1.3      36      97 ..     378     442 ..     371     450 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.38
       AAA_7  38 lvGptGtGKtviikdllkkld 58 
                 lvG+ G GK++ +k l  kl+
  KKY16191.1 108 LVGTNGIGKSTALKILSGKLK 128
                 8**********9998777776 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0031
       AAA_7  36 vllvGptGtGKtviikdllkkld...kekylsltinfsaqtsanqlqdiiesklekrrkgvygPp 97 
                 ++++G+ GtGKt+ ++ l  + +   ++++  l+i+++ q    ++  ++ + + k+ k  +  p
  KKY16191.1 378 IVMMGENGTGKTTFCRMLAGAEKpdgTTRVPQLNISMKPQKITPKFTGTVRQLFFKKIKAAFLSP 442
                 7899***********99655544123344456677777777777777777777777777777666 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   2.4       2.6   1.1e+03       3      14 ..      19      31 ..      11      51 .. 0.81
   2 ?   13.9   0.3   0.00018     0.078       2      18 ..      55      71 ..      54      98 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 2.6
     Fer4_16  3 gtCgk.CaevCPt 14
                ++C++ C ++CP+
  KKY16191.1 19 KKCRQeCKKSCPV 31
                4677778888886 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 0.00018
     Fer4_16  2 CgtCgkCaevCPtnaik 18
                C++Cg C + CP +ai+
  KKY16191.1 55 CIGCGICPKKCPFGAIH 71
                ***************86 PP

>> VirE  Virulence-associated protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.014       6.1      53      75 ..     104     126 ..      88     168 .. 0.90
   2 ?    3.2   0.0      0.14        61      53      73 ..     376     397 ..     368     403 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.014
        VirE  53 fvlvLvGkqgsgKstfleklgee 75 
                 +vl LvG  g+gKst l++l+++
  KKY16191.1 104 QVLGLVGTNGIGKSTALKILSGK 126
                 6899****************764 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.14
        VirE  53 fvlvLvGkqgsgKstflekl.g 73 
                 +++v+ G+ g+gK+tf + l g
  KKY16191.1 376 EIIVMMGENGTGKTTFCRMLaG 397
                 6899**************9944 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8  12.0   0.00049      0.21       4      51 .]      20      70 ..      14      70 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00049
      Fer4_9  4 gCga.CveaCpagvvvedaaerkarlraase......eaCigCgaCveaCpkgai 51
                +C++ C ++Cp   + +      +++  + +        CigCg C ++Cp gai
  KKY16191.1 20 KCRQeCKKSCPVVRTGK----LCIEVSPEAKiayiseRLCIGCGICPKKCPFGAI 70
                46533777774433333....333332222233334478************9987 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00056      0.24      15      86 ..     371     442 ..     363     473 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00056
                 SBXTTXEEEEEEXTTSSHHHHHHHHHHHHHHCSTSEEEEEESSSXHHHHHHHHHHHHHTXXHHHHHHTTSXH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  15 GlqkgdliiiAarpsmGktalalniaenaavkeklpvavfslemsaeqlvqRllsseaeidskklrtgklke 86 
                  + ++++i++ +  ++Gkt+++  +a +   + +++v   ++ m+ ++++ ++  +  ++  kk++ + l+ 
  KKY16191.1 371 SFTDSEIIVMMGENGTGKTTFCRMLAGAEKPDGTTRVPQLNISMKPQKITPKFTGTVRQLFFKKIKAAFLSP 442
                 6899**********************9888788889*************99999999999999998888775 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   0.00076      0.33      13      37 ..     369     393 ..     357     401 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00076
      ATPase  13 kgGipegrvvlitGepGtGKtifal 37 
                  g + + +++ ++Ge GtGKt+f+ 
  KKY16191.1 369 GGSFTDSEIIVMMGENGTGKTTFCR 393
                 45689999***************96 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.3         9   3.9e+03       6      23 ..     108     125 ..     105     127 .. 0.86
   2 ?   11.1   0.1   0.00057      0.24       3      24 ..     377     398 ..     375     406 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 9
   PduV-EutP   6 liGkvgsGKttLtqalkg 23 
                 l+G+ g GK t  + l+g
  KKY16191.1 108 LVGTNGIGKSTALKILSG 125
                 89********99988887 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00057
   PduV-EutP   3 killiGkvgsGKttLtqalkge 24 
                  i+++G+ g+GKtt ++ l g 
  KKY16191.1 377 IIVMMGENGTGKTTFCRMLAGA 398
                 6899**************9986 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   3.2       1.5   6.4e+02      33      50 ..      11      31 ..       4      35 .. 0.77
   2 ?   10.4  12.3    0.0018      0.78       4      52 .]      20      69 ..      14      69 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 1.5
      Fer4_7 33 idpekCl..gCga.CvavCPt 50
                ++++kC    C++ C + CP+
  KKY16191.1 11 VNSDKCKpkKCRQeCKKSCPV 31
                467888544899889999997 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0018
      Fer4_7  4 gCg.aCvaaCpvkaieldeeenekgtekveidpekClgCgaCvavCPtga 52
                +C+  C + Cpv        e+ ++ + ++i+++ C+gCg C + CP+ga
  KKY16191.1 20 KCRqECKKSCPVVRTGKLCIEVSPEAKIAYISERLCIGCGICPKKCPFGA 69
                5655899999955555445566677889999*****************98 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.2      0.26   1.1e+02       3      26 ..     104     127 ..     102     173 .. 0.82
   2 ?    5.5   0.1     0.039        17       3      28 ..     376     402 ..     374     522 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.26
      AAA_14   3 kilvitGaRrvGKTtllkqlikel 26 
                 ++l ++G   +GK+t lk l  +l
  KKY16191.1 104 QVLGLVGTNGIGKSTALKILSGKL 127
                 688999**********98775544 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.039
      AAA_14   3 kilvitGaRrvGKTtllkqlikell.v 28 
                 +i+v++G   +GKTt+++ l+  +   
  KKY16191.1 376 EIIVMMGENGTGKTTFCRMLAGAEKpD 402
                 7999**************999777753 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   2.0         1   4.3e+02       4      21 ..      10      30 ..       7      31 .. 0.71
   2 ?   11.7   1.3   0.00051      0.22       3      21 ..      48      66 ..      45      67 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 1
      Fer4_2  4 vvdtdrCi.g.Cg.aCvsaCP 21
                 v++d+C    C+  C ++CP
  KKY16191.1 10 IVNSDKCKpKkCRqECKKSCP 30
                688999953348778888898 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00051
      Fer4_2  3 vvvdtdrCigCgaCvsaCP 21
                +++ ++ CigCg+C + CP
  KKY16191.1 48 AYISERLCIGCGICPKKCP 66
                5666889*******77788 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9  12.1      0.75   3.2e+02       9      63 ..      23      67 ..      14      68 .. 0.75
   2 ?    9.9   1.8    0.0023      0.97       5      18 ..      55      68 ..      51     100 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.75
      Fer4_8  9 gaCqsaCpvlrrtkkhlldargeaaedvqeeqvleeeealwsCttcgaCtevCpv 63
                + C+++Cpv+r+ k  +  +++ +++   +e+          C +cg C ++Cp 
  KKY16191.1 23 QECKKSCPVVRTGKLCIEVSPEAKIA-YISER---------LCIGCGICPKKCPF 67
                47999999999998777777777677.34443.........59999999999996 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0023
      Fer4_8  5 CieCgaCqsaCpvl 18
                Ci+Cg C ++Cp+ 
  KKY16191.1 55 CIGCGICPKKCPFG 68
                ***********953 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5  11.7       1.1   4.6e+02      42      58 ..      51      67 ..      15      69 .. 0.60
   2 ?   12.0   1.0   0.00057      0.24       2      17 ..      55      70 ..      54      96 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 1.1
     Fer4_17 42 kaslCieCgeCerkCPq 58
                   lCi+Cg C +kCP 
  KKY16191.1 51 SERLCIGCGICPKKCPF 67
                34689999999999996 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00057
     Fer4_17  2 CiqCgyClpeCpsyea 17
                Ci+Cg C ++Cp++++
  KKY16191.1 55 CIGCGICPKKCPFGAI 70
                8888888888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                       108  (0.00602376); expected 17.9 (0.001)
Passed Fwd filter:                        44  (0.00245412); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              42  [number of targets reported over threshold]
# CPU time: 0.75u 0.36s 00:00:01.10 Elapsed: 00:00:00.52
# Mc/sec: 3522.16
//
Query:       KKY16192.1  [L=1408]
Description: putative chromodomain helicase hrp3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-58  196.4   0.0    8.9e-58  195.7   0.0    1.3  1  SNF2_N      SNF2 family N-terminal domain
    1.4e-26   92.1   4.3    7.4e-16   57.8   1.9    3.3  3  Chromo      Chromo (CHRromatin Organisation MOdifier) domain
    1.7e-18   67.0   0.0    4.6e-18   65.6   0.0    1.8  1  Helicase_C  Helicase conserved C-terminal domain
    9.6e-10   38.8   0.0    4.5e-09   36.6   0.0    2.3  1  DUF4208     Domain of unknown function (DUF4208)
    3.1e-08   34.0  16.7    8.5e-07   29.3   0.1    4.7  4  Cdh1_DBD_1  Chromodomain helicase DNA-binding domain 1
    7.2e-08   31.9   0.0    5.2e-07   29.1   0.0    2.2  1  HDA2-3      Class II histone deacetylase complex subunits 2 a
    2.3e-07   30.9   0.0    4.1e-06   26.9   0.0    2.6  2  ResIII      Type III restriction enzyme, res subunit
     0.0014   18.7   1.0      0.018   15.0   0.0    3.3  3  SLIDE       SLIDE
  ------ inclusion threshold ------
      0.014   15.6   0.1      0.014   15.6   0.1    2.7  3  CHDCT2      CHDCT2 (NUC038) domain
       0.13   12.5   0.0       0.66   10.2   0.0    2.2  2  AAA_22      AAA domain


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.7   0.0   4.9e-61   8.9e-58      50     349 ..     450     720 ..     432     721 .. 0.88

  Alignments for each domain:
  == domain 1  score: 195.7 bits;  conditional E-value: 4.9e-61
                 HHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH...----------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx RF
      SNF2_N  50 eakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkk...mkkkntkvapk 145
                 ++ ++ ++ +LaDemGLGKTvq++++i      ++++k++       gp+++vvP s++  W ++++ ++++ +  v+ + ++ +   ++ +  +  + 
  KKY16192.1 450 FNWSKGKNVVLADEMGLGKTVQTVSFIN---WLRHSRKQQ-------GPFIVVVPLSTMPAWADTFDFWAPDVNYVVYNGRSDAReiiKEYELLVDGNP 538
                 5667788899******************...666677765.......*************************998888877777666422232333344 PP

                 ------EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 146 lladydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkl 244
                     ++v++ttY+++ ++a      + l+q++w+++ +DE+h+lkn +s+++e + ++++  r+++tGTP+qn+l +l +L++fL++++ +     d+ 
  KKY16192.1 539 RRPRFNVLLTTYEYVLSDA------QFLSQIKWQFMAVDEAHRLKNRDSQLYEKLIEFKAPSRLLITGTPVQNNLGELSALFDFLMPGIVN----IDEN 627
                 66789***********999......9***************************************************************99....5555 PP

                 THHHHHHHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HH.H-HHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
      SNF2_N 245 lqrpieaqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalksssksk.ekilelllelrq 342
                 ++ ++e  a +++++L + ++++mlrr+k++ve +lPpk+e+ii+++ls+ ++++Y+             +l+++  al+++ k + + +l++++el++
  KKY16192.1 628 MDLNSE-AASAKIAELTEAIKPYMLRRTKQKVESDLPPKSEKIIRVELSDIQLEYYK------------NILTKNYTALNQGAKGQkQSLLNIMMELKK 713
                 555555.558999********************************************............78888899999999988777********** PP

                 HHH---X CS
                 xxxxxxx RF
      SNF2_N 343 acnhpql 349
                 a nhp +
  KKY16192.1 714 ASNHPFM 720
                 *****88 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   2.1e-11   3.8e-08       3      53 ..     255     313 ..     253     314 .. 0.88
   2 !   57.8   1.9   4.1e-19   7.4e-16       2      54 .]     352     402 ..     351     402 .. 0.97
   3 ?   -3.8   0.0       7.2   1.3e+04      14      24 ..    1190    1198 ..    1185    1199 .. 0.75

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 2.1e-11
                 EEEEEEEEEETTEEC.......EEEEEEETTSTGGGTEEEEGGGCSSH..SHHHHHHHHH CS
      Chromo   3 VerIidhrtdkdgle.......leYlVKWkglpysentWEpeenlekc..fqelideFkk 53 
                 ++ +++hr + +          +eY++KW+g  y ++tWE++e+l+ c  f++ ++++ k
  KKY16192.1 255 IDIVLNHRLRPNAASssptrddYEYFIKWQGKAYYHATWETIETLSLCrsFRR-LENYVK 313
                 5668999999999989999999**************************87777.888876 PP

  == domain 2  score: 57.8 bits;  conditional E-value: 4.1e-19
                 EEEEEEEEEEETTEECEEEEEEETTSTGGGTEEEEGGGCSSHSHHHHHHHHHH CS
      Chromo   2 eVerIidhrtdkdgleleYlVKWkglpysentWEpeenlekcfqelideFkkr 54 
                 +Ver+i+ r +++g   eY++KWkglpy+e+tWE ++++++++q +id++ kr
  KKY16192.1 352 KVERVIGWRESDEGD--EYYIKWKGLPYNECTWEAASLISEMAQVQIDKYLKR 402
                 7**************..*********************************997 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 7.2
                  TEECEEEEEEE CS
      Chromo   14 dgleleYlVKW 24  
                  +g   eY + W
  KKY16192.1 1190 KG--AEYTCDW 1198
                  34..49***** PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   2.5e-21   4.6e-18       3     111 .]     749     861 ..     747     861 .. 0.91

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 2.5e-21
                 HHHHHHHH.HHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH...TTSSSEEEESGGGTSSSTSTTESEEEESSSSSS CS
  Helicase_C   3 leallell.kleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfn...kgesdvLiatdvaerGidipkvnlVinfdlprn 96 
                 +  l +ll kl+++++++lif++ +++l+   +++ e +g  + +l+g++++  r+ +++ fn   + ++ ++++t++++ Gi++  +++Vi+fd ++n
  KKY16192.1 749 MMLLDQLLtKLKRDNHRVLIFSQMVKMLDIlGEYM-EARGHAYQRLDGTISSGARRIAIDHFNapeSPDFCFILSTRAGGLGINLMTADTVIIFDSDWN 846
                 5567778799******************8855555.8889***********************765567889*************************** PP

                 HHHHHHHHTTSSSTT CS
  Helicase_C  97 vtsyiqriGRtgRag 111
                 ++   q++ R++R+g
  KKY16192.1 847 PQADLQAMARAHRIG 861
                 *************97 PP

>> DUF4208  Domain of unknown function (DUF4208)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   2.5e-12   4.5e-09      31      96 .]    1324    1390 ..    1314    1390 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 2.5e-12
     DUF4208   31 ekl.lskkerakilkkeLlkiGdfIdellkekkeekkeklkkhlWefvskfwpkk.vsgkkLeemYkk 96  
                  ++   + + ra  l++ L  +G+fI+++l+++ ++  + l+ +lW +vs++wp++ + ++ +e++Y+k
  KKY16192.1 1324 QRAvSHGHPRAGLLRQHLRVVGNFIRKILDDE-DSVTAGLEGRLWGHVSTYWPNRgIHASDIENIYNK 1390
                  444467888999*******************7.69999***************999**********97 PP

>> Cdh1_DBD_1  Chromodomain helicase DNA-binding domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2       2.5   4.5e+03      51      80 ..     930     957 ..     920     970 .. 0.56
   2 ?   -0.2   3.5      0.68   1.2e+03      53      93 ..    1000    1042 ..     980    1060 .. 0.50
   3 !   29.3   0.1   4.8e-10   8.5e-07       1      68 [.    1065    1131 ..    1065    1136 .. 0.91
   4 !   11.6   0.1   0.00014      0.26     102     120 .]    1138    1156 ..    1130    1156 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.5
  Cdh1_DBD_1  51 akklvkeeeekrakeleeleadaeeykekl 80 
                  ++++++ +++  k+leel+ da  +k++ 
  KKY16192.1 930 GQRMFEQTDNQ--KKLEELDLDAVLEKAED 957
                 55666665555..45666665554444432 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.68
  Cdh1_DBD_1   53 klvkeeeekra..keleeleadaeeykeklkkgevkadeekkd 93  
                  +++k eeekr+  + l+++ ++ + +k + +k+e + +++ k 
  KKY16192.1 1000 EEIKAEEEKRKneEYLADVIEQNQPRKRTAAKLESREERQAKR 1042
                  3333333333201234444444444444444444444444443 PP

  == domain 3  score: 29.3 bits;  conditional E-value: 4.8e-10
  Cdh1_DBD_1    1 ltEreiRalYkaiLkyGdlsnkleeliadGtLPeknielleelyeelleeakklvkeeeekrakelee 68  
                  l+Ere R l +a L+yGd++++ ee++a+  L  ++  +++ + +e+ +++++lvkee ++r++ le 
  KKY16192.1 1065 LNEREFRYLIRAHLRYGDIDDRREEFLAEARLGGRHDSVIKTALKEVWDTSDRLVKEE-HARTEALER 1131
                  79*****************************************************976.567777765 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 0.00014
  Cdh1_DBD_1  102 krrekkAiLFeykgvknlN 120 
                   ++++kA+LFe +gvk +N
  KKY16192.1 1138 TKKDRKAVLFELHGVKRIN 1156
                  589**************99 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   2.9e-10   5.2e-07      10     247 ..     672     885 ..     665     901 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 2.9e-10
                 E---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH.HHHHHHHH.HHHHHHH-GGG...T--TT--S-S-STTHHHHHHHT-HHHHHHHHHHHHHTT CS
      HDA2-3  10 tpltelqkelteqivslhyedllkyvetsdsqeklslsikslticlenlslvanHPsL...LvdHympkklllkelpeklaetSgKFkvlndlvnliie 105
                 + l+++q e ++ i++  y+ l +  + +        ++++l+i++ +l+  +nHP +     d ++p    + e    l+++SgK+ +l +l+  +  
  KKY16192.1 672 VELSDIQLEYYKNILTKNYTALNQGAKGQ--------KQSLLNIMM-ELKKASNHPFMfppAEDRLVPEGARRDERLRALITSSGKMMLLDQLLTKLKR 761
                 44555555555555555555554444222........167799999.89*********444469**********************************9 PP

                 SS....EEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-..................-SEEEEEEESS---TTTS--TT-S-EEEEEE- CS
      HDA2-3 106 rkrksslnvlvvakskkeldLiEalllGkklkikrysgeklydekkkkskdtkknsrktkeklkkkihsltihllsttrqltkdksllenikfdliiaf 204
                 ++      vl+ ++ +k ld++  ++  ++  ++r++g+  ++  +               +  +   s ++ ++ +tr         + + +d +i f
  KKY16192.1 762 DN----HRVLIFSQMVKMLDILGEYMEARGHAYQRLDGTISSGARRIAI------------DHFNAPESPDFCFILSTRAGGLG---INLMTADTVIIF 841
                 99....99******************************98877777666............22334456777788888776444...556678****** PP

                 SST--TTSHHHHHHH----.------EEEEEETTSHHHHHHHHT CS
      HDA2-3 205 Dssvdtsspsveslrtqnr.kknklpiirlvpinSieHvkLcfk 247
                 Ds+ +++ +   + r ++  + +++ ++rlv+ +++e   L++ 
  KKY16192.1 842 DSDWNPQADLQAMARAHRIgQTKPVSVYRLVSKETVEEEILERA 885
                 ********99999999875144559************8888777 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   2.3e-09   4.1e-06       3     169 ..     436     602 ..     426     604 .. 0.78
   2 ?    0.5   0.0      0.29   5.2e+02       6      69 ..     698     778 ..     695     823 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 2.3e-09
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG...........GEEEESSS- CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee.kflflvprkslleqtleefkkflseayke.......igkkvsgdk 93 
                 +lr+ Q++ ++ l+ ++   + k+++++ + G GKT+  +++i  l++++k++  f+++vp  + +  + ++f  ++++ +         +        
  KKY16192.1 436 KLRDFQMTGLNFLAFNW--SKGKNVVLADEMGLGKTVQTVSFINWLRHSRKQQgPFIVVVPLST-MPAWADTFDFWAPDVNYVvyngrsdA-------- 523
                 57778888888777676..5899999***********************999978888888655.67799999777777654343333333........ PP

                 B--..................-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS...TTTHHHHHT---SEEEEEESS- CS
      ResIII  94 kka...........kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak..kswreilekfkeavllglTATp 169
                   +            + ++   ++l+tt++ + +d        + l++ + +++ +DEaHrl+    + +++++e  k+  +l +T+Tp
  KKY16192.1 524 --ReiikeyellvdGNPRRPRFNVLLTTYEYVLSDA-------QFLSQIKWQFMAVDEAHRLKNRdsQLYEKLIEF-KAPSRLLITGTP 602
                 ..22233444444666667799*************9.......666677788999********9854499998776.99999999***9 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.29
                 HHHHHHHHHHT.........................TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHH CS
      ResIII   6 eyQeeaienlleklks...................krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleq 69 
                 + Q++ + n++ +lk+                    r+ + l ++ T +GK +++ +l  +l++ ++  ++l++ +  ++l+ 
  KKY16192.1 698 KGQKQSLLNIMMELKKasnhpfmfppaedrlvpegARRDERLRALITSSGKMMLLDQLLTKLKRDNH--RVLIFSQMVKMLDI 778
                 6799999***999999999999999999999999977778888899999*99999999999999877..88887766666654 PP

>> SLIDE  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   3.0         7   1.3e+04       5      29 ..    1000    1024 ..     998    1047 .. 0.73
   2 ?   -2.7   0.1       3.2   5.8e+03       2      26 ..    1027    1051 ..    1026    1075 .. 0.77
   3 !   15.0   0.0     1e-05     0.018      16      78 ..    1162    1224 ..    1153    1229 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 7
       SLIDE    5 kqIekgekkieklkelkellkkkve 29  
                  ++I+++e+k+++++ l +++++   
  KKY16192.1 1000 EEIKAEEEKRKNEEYLADVIEQNQP 1024
                  6788888888888888888877654 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.2
       SLIDE    2 kiikqIekgekkieklkelkellkk 26  
                  +  ++ e+ e+++ k++  + + ++
  KKY16192.1 1027 RTAAKLESREERQAKRQARQHVAES 1051
                  6678899999999999988877655 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 1e-05
       SLIDE   16 klkelkellkkkveqyknplqelkikyp.psnkgkkeyteeeDrfllvllakyGygnyekikke 78  
                   +   ++ll++ ++++++p   ++i  +   ++  + ++  eD +l v +a++Gyg++eki+++
  KKY16192.1 1162 DRPAEMRLLREVTSAVSDPKA-FRIPEAtKGAEYTCDWSFREDGMLCVGIARHGYGAWEKIRDD 1224
                  555678899999999999864.666554233333667899*********************985 PP

>> CHDCT2  CHDCT2 (NUC038) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       2.3   4.1e+03     106     147 ..     724     767 ..     691     776 .. 0.61
   2 ?   -4.1   0.6       8.9   1.6e+04      78     114 ..    1029    1052 ..    1002    1060 .. 0.43
   3 ?   15.6   0.1     8e-06     0.014       5      52 ..    1198    1244 ..    1196    1329 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.3
      CHDCT2 106 shqkllkesaagnknanavle..kvLnqleelLsdmkadvsrlp 147
                 ++ +l+ e+a  ++  +a+++    +  l++lL+ +k d +r+ 
  KKY16192.1 724 AEDRLVPEGARRDERLRALITssGKMMLLDQLLTKLKRDNHRVL 767
                 55555555554444444433311345679999999999999864 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 8.9
      CHDCT2   78 aallnlqeekekvgslaqrfaelellaeshqkllkes 114 
                  aa+l+++              e +   +++q+++++s
  KKY16192.1 1029 AAKLESR-------------EERQAKRQARQHVAESS 1052
                  1222222.............22233333444444444 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 8e-06
      CHDCT2    5 WhRrHDyWllagvvlhGyaRwqDiqndprfaiinepFkseaekgnfle 52  
                  W  r D  l +g++ hGy+ w+ i +dp +a+ +  F +e++ +n ++
  KKY16192.1 1198 WSFREDGMLCVGIARHGYGAWEKIRDDPDLALHDKLFLEEHRVSN-KD 1244
                  88899999************************9999999887765.33 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00037      0.66      13     115 ..     463     590 ..     453     605 .. 0.74
   2 ?   -2.5   0.1       3.2   5.8e+03      53      81 ..     990    1018 ..     931    1078 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00037
      AAA_22  13 esGtGKTtllrrlleqldeeakaee....................erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav 91 
                 e G GKT+    + ++l    k++                       p+v +v  ++ ++ +++ +e    ++ +  +   +   ll++ e  l++++ 
  KKY16192.1 463 EMGLGKTVQTVSFINWLRHSRKQQGpfivvvplstmpawadtfdfWAPDVNYVVYNGRSDAREIIKEYELLVDGNPRR--PRFNVLLTTYEYVLSDAQF 559
                 6799************97666666699999999999999888888666666777777778899999999999977777..5555555444444444444 PP

      AAA_22  92 .....ielliiDEaqhlr.s.eealeeLrsl 115
                       +++ +DEa++l  +  +++e+L ++
  KKY16192.1 560 lsqikWQFMAVDEAHRLKnRdSQLYEKLIEF 590
                 5778889**********65357777777544 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.2
      AAA_22   53 skdl.lrellralglelkaerlsseellea 81  
                  ++++  +e l++++ e ++ r+++e l + 
  KKY16192.1  990 WDEIiPKEQLEEIKAEEEK-RKNEEYLADV 1018
                  4444333344444444444.2222222233 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1046  (0.0583412); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.49
# Mc/sec: 8609.00
//
Query:       KKY16193.1  [L=853]
Description: hypothetical protein UCRPC4_g05998 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.3e-113  378.4  19.3   6.3e-113  378.4  19.3    2.4  3  SLD3      DNA replication regulator SLD3


Domain annotation for each model (and alignments):
>> SLD3  DNA replication regulator SLD3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.8      0.22     4e+03     306     338 ..     161     194 ..     123     243 .. 0.45
   2 !  378.4  19.3  3.5e-117  6.3e-113       3     538 ..     259     712 ..     257     713 .. 0.82
   3 ?   -2.6   3.2     0.095   1.7e+03     466     537 ..     753     777 ..     721     835 .. 0.47

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 0.22
                 XXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXX CS
        SLD3 306 akpgaaakrsasqkekrrtlerv....ltdekrsrrs 338
                  +pg +   ++++k k+  ++r+    + d ++ +++
  KKY16193.1 161 LQPGPP---PKQPKMKKGAMARMailpHADSQQTKSQ 194
                 333333...1112222222222222222222222222 PP

  == domain 2  score: 378.4 bits;  conditional E-value: 3.5e-117
                 HHHHHHHHHHHHHSTTS-HHHHHHTHHHHHHHHHH..HHHHTT...THHHHHHHHHHTT---HHHHHHHHTGGGS--SSHH...............HHH CS
        SLD3   3 lenlrtqYleaLYssktsLaYFaKgpLsRaRaafq..ldlesn...lemsdliefLrsliLstkeiDkKYretlpeviselktevedsdegskkkkkkk 96 
                 le+l ++Yle+LY+skts+aYFaKgpL+RaRaaf+  + +e++   +++s+l++f+r  i+s  ++D KY+etl + i++ ++     d++  + +k+k
  KKY16193.1 259 LEKLHSRYLETLYTSKTSVAYFAKGPLARARAAFSksQAVEGSqilSDPSQLAQFYRDSIISLRKMDLKYKETLVKSIQKNDEA----DSA--RYRKRK 351
                 789*******************************9522233332336889***********************99888877333....444..445899 PP

                 HHHHHHHHHTTT-TT--.....................HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.........T-GGGGS--------------- CS
        SLD3  97 kkkkklgkngLypeeeelirkWwkarddekkvsseesreeeikkhisdLrvREtqLQiiliLEilaLeekssekqlpglekkkkakekkkeekekkqkt 195
                 k ++k+gk+gLyp+e e++++Ww+++  +   +s+e + +++k+  ++Lr+REtqLQi++iLE + Le          + ++++ k++++e        
  KKY16193.1 352 KTQPKIGKDGLYPDEAEFVQRWWQSTVPDLAGTSSEAELQRLKDLSTELRSRETQLQILIILEAMILE----------MPSEANVKRESEEPDL----- 435
                 99************************8777777899999*****************************..........3333333333333332..... PP

                 -------------HHHHHHHHHHHHHHHHHHHHT-...-----------SHHTT-TTSTTSHHHHHHHTHHHHHSSSSHHHHHHHHHHHCXX....... CS
        SLD3 196 kqkkkkkkkkkqnlpvlLdvllDRLcIWqsvlsdevkalaesqkleeeeeaesakkaesdslrdFcvdViiPFfsaRLPelcksinrKlggpvakspkk 294
                    k+  +kkkq+l + Ld+l+DRLcIWq+v+++e    ++++         +a k+++d+lrdFc dViiPF++++LP++ck++ +Klggp+ +sp++
  KKY16193.1 436 ---KNIPTKKKQDLRTHLDLLVDRLCIWQTVSFEE---FTNDK---------AAGKKTNDKLRDFCSDVIIPFYASKLPDRCKALCKKLGGPSDISPNR 519
                 ...333799**************************...33333.........357899***************************************99 PP

                 ............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX....XXXXXXXXXXXXXXXXXXX............. CS
        SLD3 295 kkkske..kskskakpgaaakrsasqkekrrtlervltdekrsrrsvsrgpssaialsrsatatsipglkResseppllslisksesgllkskslkere 391
                 +++     +s+s+  pg ++krs+       +l+r+lt++     s sr p             s+p+lkResse+pl         + l++k +++r+
  KKY16193.1 520 PRAPLDksSSASRVLPGMEVKRSR-----PTSLQRALTEDV----SRSRPP-------------SLPSLKRESSERPLSR-------SGLHAKLMENRQ 589
                 977665556777778**9999987.....568********6....445555.............699********98844.......247899****** PP

                 ..XXXXXX.XXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXX............. CS
        SLD3 392 vdlsasasaeeakakkkaqv...eaeLkeaIsalrkPNRelvakeiveaaekrlsklqassrkskkpvrkplaqtvqVkATPkknrkkDvlakaeeese 487
                 +dl a a+++e+k+kk + +   +++L++aIs lrkPNR +vak+ive+ e+r++       k+++ ++     ++qV+ATP+k++       a+e + 
  KKY16193.1 590 IDLFAAAKQQESKTKKLQALaeqKKQLDAAISMLRKPNRGVVAKSIVEEVEQRQQ-----ISKDNRGIK-----GIQVMATPRKRK-------ANELQA 671
                 *****************9999999*****************************77.....335544443.....58******9999.......222233 PP

                 .......XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXX CS
        SLD3 488 taasaseetepaksssaqvvPsstlrksskekrknstssraeqsavqeTPs 538
                 +++ +++e+      +   vP st+r+++++ +      ++ ++++qeTPs
  KKY16193.1 672 DSQLPEAEVA----PEIFAVPLSTVRSKARQTA------SMPDHSIQETPS 712
                 4445555444....57999*******9997666......35689******8 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.095
                 XXXXXXXXX....................XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXX CS
        SLD3 466 VkATPkknrkkDvlakaeeesetaasaseetepaksssaqvvPsstlrksskekrknstssraeqsavqeTP 537
                 V+ TP  +r+ D                                                + + + ++++TP
  KKY16193.1 753 VAVTPTMSRTSDQ-----------------------------------------------QLEPHGSIEATP 777
                 4444444442222...............................................222333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1171  (0.0653132); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.52
# Mc/sec: 4889.69
//
Query:       KKY16194.1  [L=382]
Description: putative glycerate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-41  140.1   0.1      1e-40  139.0   0.0    1.6  2  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    7.6e-15   54.8   0.1      1e-14   54.3   0.1    1.1  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
     0.0018   18.4   0.1     0.0051   16.9   0.1    1.8  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
  ------ inclusion threshold ------
      0.059   13.5   0.8       0.18   12.0   0.8    1.8  1  ProRS-C_2      Prolyl-tRNA synthetase, C-terminal
       0.13   12.8   0.0       0.25   11.8   0.0    1.5  1  XdhC_C         XdhC Rossmann domain
       0.13   11.8   0.1       0.38   10.3   0.1    1.7  2  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.89   2.7e+03      29      63 ..      98     132 ..      90     157 .. 0.67
   2 !  139.0   0.0   3.4e-44     1e-40       3     178 .]     170     351 ..     168     351 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.89
                   GSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEE CS
  2-Hacid_dh_C  29 llgkelsgktvGiiGlGrIGqavakrlkafgmkvi 63 
                   l g++l++ t+Gi  +  I  a  +r+ ++++ ++
    KKY16194.1  98 LIGERLQDATIGITTIVPITAADLDRCPKLQAVIV 132
                   66788888888887776666666666655555554 PP

  == domain 2  score: 139.0 bits;  conditional E-value: 3.4e-44
                   HHHHHHTTHHHHHHHH.HTTCC.......HTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH CS
  2-Hacid_dh_C   3 lllallrrlaeadeev.regew.......ksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellae 91 
                   l +a+ r++ e++++   ++ew        + k+ + ++ s +t+ i+G+G++G+++  ++ka+gmkv++ dr+  ke      ++    +ee l+ 
    KKY16194.1 170 LYFAARRKVVELHAAAmYTNEWvenggmlARFKRGPPRSASMETMVIFGYGSLGKRIEGLAKALGMKVLIADRKGVKEP-----RAGRIAFEEGLEV 261
                   55666666666655432555665544446666788888************************************88544.....456679******* PP

                   -SEEEE-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTC.HHHHH..STTEEE-SS-T CS
  2-Hacid_dh_C  92 sDivslhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplped.splle..lpnviltPHia 178
                   + +v++++p +++t ++i+++el+ m ++ailiN+aRGg+++e+aL+ aLk+g+iagaa+Dv+e+ep  +  spll+   pn++++PH+a
    KKY16194.1 262 ATVVVVVVPREKDTIDMIDEKELRTMNEDAILINVARGGIINEKALVVALKEGWIAGAATDVLEQEPSAPGqSPLLDdkIPNLTVSPHVA 351
                   ******************************************************************98865279987669********98 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.1   3.4e-18     1e-14      35     133 ..     101     381 ..      91     382 .] 0.97

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 3.4e-18
                 HHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH............................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................... RF
  2-Hacid_dh  35 ekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt............................... 102
                 e+++da + i++    +ta+ l+++pkL+ +   ++G+  v  + +++rGi+V+n+p+ + esv E+t                               
  KKY16194.1 101 ERLQDATIGITTIVP-ITAADLDRCPKLQAVIVWATGYGWVEKAEFQKRGIVVMNTPQTNVESVSEHTialyfaarrkvvelhaaamytnewvenggml 198
                 677777777777776.*********************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  KKY16194.1 199 arfkrgpprsasmetmvifgygslgkrieglakalgmkvliadrkgvkepragriafeeglevatvvvvvvprekdtidmidekelrtmnedailinva 297
                 *************************************************************************************************** PP

                 ......................................................T-BHHHHHHHHHHHHHHHHHHHTTCCGTTBC CS
                 ......................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ......................................................aaTeeaqeniaeeaaenlvaflkgespanav 133
                                                                       +++e+++ n+ e+  + +++f+kg +p n+v
  KKY16194.1 298 rggiinekalvvalkegwiagaatdvleqepsapgqspllddkipnltvsphvaWYSEQTILNLQEMLKKTVESFVKG-EPINVV 381
                 ******************************************************************************.666666 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.7e-06    0.0051      24     110 ..     212     297 ..     195     314 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.7e-06
                    SEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHH....HHHHHCTT-EE--HHHCTTT-SEEEE-SSSSSSB-HHHHCCS-TTEEEEE-S CS
  AdoHcyase_NAD  24 kvavvaGyGdvGkGcaaslkglGarvivtevdPic....alqaameGfevvtleevvkkadivvtttGnkdiitlehlkkmkddaivcniG 110
                     ++v+ GyG +Gk      k+lG +v++++   +        a  eG+ev+t+  v     +v     + d+i  ++l++m++dai+ n+ 
     KKY16194.1 212 ETMVIFGYGSLGKRIEGLAKALGMKVLIADRKGVKepraGRIAFEEGLEVATVVVV-----VVPREKDTIDMIDEKELRTMNEDAILINVA 297
                    689*************************9976555000055556667666665433.....3334567789******************95 PP

>> ProRS-C_2  Prolyl-tRNA synthetase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.8     6e-05      0.18      37      59 ..       8      30 ..       3      38 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6e-05
                SHHHHHHHSS-EEEEEESSSSEE CS
   ProRS-C_2 37 neefeeeidasvLGeteyeGkkY 59
                +ee eee + s+LGe ey+G  Y
  KKY16194.1  8 EEEEEEEGKTSILGEREYQGYIY 30
                58889999************877 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.5e-05      0.25       1      50 [.     214     268 ..     214     311 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.5e-05
                 EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG.-GGG-TT-SE.....-EEEE- CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvdpreefa.tkerfpeade.....tavvvl 50 
                 +vifG g  ++ +  la+alg++v ++d +   + ++ r++  +e     t+vvv+
  KKY16194.1 214 MVIFGYGSLGKRIEGLAKALGMKVLIADRKGVKEpRAGRIA-FEEglevaTVVVVV 268
                 79*************************99985332333333.22257776555544 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.95   2.8e+03      59      86 ..     146     173 ..     130     183 .. 0.70
   2 ?   10.3   0.1   0.00013      0.38       6      67 ..     213     268 ..     210     311 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.95
                 HT-SEEEE-S-HHHHHHHHHHHTGGG-- CS
        IlvN  59 kkadvvmiliPDelqkevyeeeiepnlk 86 
                 +k  +v++ +P +  ++v e++i+ ++ 
  KKY16194.1 146 QKRGIVVMNTPQTNVESVSEHTIALYFA 173
                 3445777788888888888888876655 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00013
                 -EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-H...HHHHHHHTT-EEEEHHHHHHT-SEEEE- CS
        IlvN   6 kiaviGyGsqGhaqalnlrdsgldvvvglregsk...svkkAkeegfevltvaeavkkadvvmil 67 
                 ++++ GyGs G+      +  g++v ++ r+g k     + A eeg+ev+tv  +         +
  KKY16194.1 213 TMVIFGYGSLGKRIEGLAKALGMKVLIADRKGVKeprAGRIAFEEGLEVATVVVV---------V 268
                 7899*********99999************9985222445567777777665443.........3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2681.43
//
Query:       KKY16216.1  [L=534]
Description: putative sugar transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-95  318.5  28.2    8.1e-95  318.3  28.2    1.0  1  Sugar_tr         Sugar (and other) transporter
    8.2e-24   84.2  35.7    5.5e-22   78.2  22.1    2.1  2  MFS_1            Major Facilitator Superfamily
     0.0064   15.0   1.2     0.0064   15.0   1.2    2.1  2  TRI12            Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
      0.065   13.2   0.8       0.44   10.6   0.3    2.6  2  MNSV_P7B         Melon necrotic spot virus P7B protein
      0.075   12.5   0.0       0.12   11.8   0.0    1.2  1  Methyltransf_PK  AdoMet dependent proline di-methyltransferas
      0.097   12.7   0.0        0.2   11.7   0.0    1.5  1  Glyco_transf_28  Glycosyltransferase family 28 N-terminal dom
       0.19   11.8   2.5        1.7    8.7   0.4    3.0  2  DUF2614          Zinc-ribbon containing domain
          5    7.3   5.7        2.2    8.5   2.1    2.2  2  DUF1196          Protein of unknown function (DUF1196)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.3  28.2   3.6e-98   8.1e-95       1     452 []      15     473 ..      15     473 .. 0.94

  Alignments for each domain:
  == domain 1  score: 318.3 bits;  conditional E-value: 3.6e-98
                 HHHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   1 valvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 va++a++gg+lfg+d+  ++a++   +++ +f+  + +        ++g+i s++ +G+++Gs++ag+++d++GR++s+++a++  ++g+++q a +  
  KKY16216.1  15 VAFIATVGGMLFGFDISSMSAIIGTDQYLDFFNNPNGV--------RQGAINSALAAGSVVGSIIAGPVSDKLGRRDSIMFACLWWLAGTAVQTAVD-- 103
                 799************************88877666655........3589***********************************************.. PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPryl 198
                   + +l++gR+l G++vG++s  vP+y++EiA k++Rg++++++qlai +Gil+ +++g+g + +++   +r   g+q+vp ++l+ +l flP SPr+l
  KKY16216.1 104 -GFGMLMAGRILNGVCVGITSSQVPVYLAEIARKEMRGKVIVIQQLAIEWGILIMYFIGYGCSFIDGPASFRTAWGIQFVPCVFLMCGLPFLPRSPRWL 201
                 .9*****************************************************************99****************************** PP

                 HHTT-HHHHHHHHHHHHHC.HHHHHHHHHHHHHHHHHHH........HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HH CS
    Sugar_tr 199 vekgkeeeakevlaklrge.edadrelaeekdsleaeqeee...kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks..ll 291
                  ++++ +ea ++la+++   + +d+ +++e + + ++  +e      w++++ + ++ +r+l g+ +q++qq +G n+++yy  +if  +gl+    l+
  KKY16216.1 202 AKVDRVDEAIQTLARIQAGgNVNDPLVVAEWEDITMTLAAErnaLPGWRKFVYN-GMWKRTLAGFTVQMWQQNSGANVMTYYVVYIFLMAGLTGNvnLI 299
                 ***************655447777777777777777766666556789999999.99**************************************9*** PP

                 HHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS.................CHHHHHHHHHHHHHHHTTTTHHHHHHHH CS
    Sugar_tr 292 vtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvaks..............kaasivaivfialfialfalgwgpvpwvlvs 376
                  ++i +++ +++t + +f +dr+GRR+ll+ Ga+ m +c +++g+v  ++++                 a++  +i+f +l i+++al+++pv wv+++
  KKY16216.1 300 SSGIQYALFIIFTSFIFFYIDRLGRRPLLIYGAMLMGLCHFVVGGVLSAGESVPggvdgnknvlirvtGAKAHTVIAFSYLLIIFYALTLAPVAWVYAA 398
                 ********************************************8888888887889999999**9987888899************************ PP

                 HHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 377 ElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 E+ ++++R++++ i++  nwl+nf+ +l +p  +++i+ +++f+vf++++ l++   +f++pet g+tleeieelf
  KKY16216.1 399 EVWSLETRATGMGISAIGNWLFNFALGLYIPPGFQNIK-YGMFIVFGVMCFLGAAQFYFTYPETCGKTLEEIEELF 473
                 **************************************.**********************************997 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2  22.1   2.4e-25   5.5e-22       4     292 ..      15     341 ..      12     354 .. 0.77
   2 !   18.5  13.0   3.5e-07   0.00078      46     201 ..     309     482 ..     308     494 .. 0.79

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 2.4e-25
       MFS_1   4 aaflsalarsilgpalplalaedlg..........ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvl 91 
                 +af+++ + +++g+ ++  ++   g           ++  +g + ++ a+g++v+s+++G++sd++Grr  ++++ l++++g ++  ++  ++ +l+++
  KKY16216.1  15 VAFIATVGGMLFGFDIS-SMSAIIGtdqyldffnnPNGVRQGAINSALAAGSVVGSIIAGPVSDKLGRRDSIMFACLWWLAGtAVQTAV-DGFGMLMAG 111
                 55666666666555555.5555544333333333455566999***************************6666666666663555554.9999***** PP

       MFS_1  92 rvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrkspkee 187
                 r+l G++ g+  + + +++a+++ ke rg++i + ++++  G+++ + +g  ++   g   +r ++ i  + ++++ +++l +lp++p+  +++  ++e
  KKY16216.1 112 RILNGVCVGITSSQVPVYLAEIARKEMRGKVIVIQQLAIEWGILIMYFIGYGCSFIDGpasFRTAWGIQFVPCVFL-MCGLPFLPRSPRWLAKVDRVDE 209
                 **********************************************999996663333677************998.6788*************99999 PP

       MFS_1 188 e...........................kgtgpaplvpawkallkdpvlw.illialllfffgfsg...lltllplylqevlgls...glllaglllal 252
                                                ++++++p+w++++ +  +w   l+++ + ++  ++   ++t+  +y+    gl+   +l+++g+ +al
  KKY16216.1 210 AiqtlariqaggnvndplvvaeweditmTLAAERNALPGWRKFVYNG-MWkRTLAGFTVQMWQQNSganVMTYYVVYIFLMAGLTgnvNLISSGIQYAL 307
                 9*********99999999999998888877777778889********.887777777777544444999888888888888888887777888888888 PP

       MFS_1 253 lalvgailallagrlsdrlgrrrrlllallllllaalgla 292
                 + +++ ++     +++drlgr  r ll+++++l++++ ++
  KKY16216.1 308 FIIFTSFI----FFYIDRLGR--RPLLIYGAMLMGLCHFV 341
                 88777555....455677777..44445555554444444 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 3.5e-07
       MFS_1  46 avaslplGrlsdrfGrrrvlllglllfalg.lllll.f.ass......................lwlllvlrvlqGlgagalfpagaaliadwfpkeer 119
                 ++++ ++ + +dr+Grr++l+ g+ l++l+ ++++  + a +                      +++++++ +l  + a +l+p++ +++a++++ e r
  KKY16216.1 309 IIFTSFIFFYIDRLGRRPLLIYGAMLMGLChFVVGGvLsA-GesvpggvdgnknvlirvtgakaHTVIAFSYLLIIFYALTLAPVAWVYAAEVWSLETR 406
                 6889999999********************9888886541.233455666677777777777764445555555555556789**************** PP

       MFS_1 120 graigllsagfslGa.ilgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawk 201
                 + ++g+ ++g+ l   +lg  + + +  ++   ++f++++++++l++    ++++ +++  k+ +++ee    +p +++p wk
  KKY16216.1 407 ATGMGISAIGNWLFNfALGLYIPPGFQ-NIK-YGMFIVFGVMCFLGAA--QFYFTYPETCGKTLEEIEE--LFAPGAIKP-WK 482
                 **********99999899999999997.554.589***********55..6999999999999999999..455555555.65 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   1.2   2.8e-06    0.0064      81     161 ..      55     136 ..       5     163 .. 0.82
   2 ?    1.1   0.1     0.044        99     101     126 ..     318     344 ..     289     350 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.8e-06
       TRI12  81 slfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpaga.splfvgelmsn 161
                 + + +  + g  v  ++ g ++d++grr  ++ + +  l g+ v  + + f  l+a   l gv+ g + +  p+++ e+  +
  KKY16216.1  55 GAINSALAAGSVVGSIIAGPVSDKLGRRDSIMFACLWWLAGTAVQTAVDGFGMLMAGRILNGVCVGITSSqVPVYLAEIARK 136
                 555566678999999***************************************************8766269999998654 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.044
       TRI12 101 ltdrfgrrpfvilt.hilglvgaivgc 126
                   dr+grrp++i    ++gl   +vg 
  KKY16216.1 318 YIDRLGRRPLLIYGaMLMGLCHFVVGG 344
                 579*******99861567999999985 PP

>> MNSV_P7B  Melon necrotic spot virus P7B protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3    0.0002      0.44      16      32 ..     306     322 ..     300     326 .. 0.86
   2 ?   -1.3   0.0         1   2.3e+03      24      56 ..     381     413 ..     369     417 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0002
    MNSV_P7B  16 allilfisfvlfyitsl 32 
                 al+i+f sf++fyi  l
  KKY16216.1 306 ALFIIFTSFIFFYIDRL 322
                 9*************876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1
    MNSV_P7B  24 fvlfyitslspqGntyvhhfdnssvktqyvGis 56 
                 +++fy  +l+p    y         ++  +Gis
  KKY16216.1 381 LIIFYALTLAPVAWVYAAEVWSLETRATGMGIS 413
                 356777788887766655444444444445555 PP

>> Methyltransf_PK  AdoMet dependent proline di-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.5e-05      0.12      11      70 ..      12      71 ..       8      84 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.5e-05
  Methyltransf_PK 11 aYWesveadvdGvLGGygavskiDvkgsrkflkklkkeslpgkrevkvaldcGaGiGrvt 70
                     +Y+    a+v G+L G++  s   + g +++l+ +++ + + +  ++ al +G+ +G + 
       KKY16216.1 12 TYFVAFIATVGGMLFGFDISSMSAIIGTDQYLDFFNNPNGVRQGAINSALAAGSVVGSII 71
                     67788889*************************************************885 PP

>> Glyco_transf_28  Glycosyltransferase family 28 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.7e-05       0.2      82     135 ..     206     259 ..     191     263 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.7e-05
                      HHHHHHHHCCCCCCCCCCCHCCCCCHCCCTTHCCCCCHCTS-ECCCCCCCCC-S CS
  Glyco_transf_28  82 kilkeakpdavvgtggyvslpaviaaplaripviihEqnaipglanktlsrtat 135
                      ++ + ++  a +++gg+v+ p v+a +     +  +E na+pg + ++   + +
       KKY16216.1 206 RVDEAIQTLARIQAGGNVNDPLVVAEWEDITMTLAAERNALPGWRKFVYNGMWK 259
                      555667778889********************************9998766555 PP

>> DUF2614  Zinc-ribbon containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.4   0.00077       1.7      11      53 ..     304     345 ..     294     354 .. 0.83
   2 ?    1.1   0.1      0.18     4e+02      37      58 ..     437     458 ..     418     469 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00077
     DUF2614  11 tfalllvfiglivmyigllfkeselllvlflllGlllvlastv 53 
                 ++al+++f+++i +yi  l +  +ll+   +l+Gl+ +++  v
  KKY16216.1 304 QYALFIIFTSFIFFYIDRLGR-RPLLIYGAMLMGLCHFVVGGV 345
                 79***************8876.578888899***999887655 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.18
     DUF2614  37 lvlflllGlllvlastvvyfwi 58 
                   +f+++G++++l ++  yf  
  KKY16216.1 437 YGMFIVFGVMCFLGAAQFYFTY 458
                 457999*********9999975 PP

>> DUF1196  Protein of unknown function (DUF1196)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   2.1   0.00096       2.2       8      20 ..     181     193 ..     179     198 .. 0.93
   2 ?   -2.7   0.1         3   6.7e+03       8      18 ..     282     292 ..     279     294 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00096
     DUF1196   8 fvmCvflmPtlPf 20 
                 fv Cvflm  lPf
  KKY16216.1 181 FVPCVFLMCGLPF 193
                 9***********9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3
     DUF1196   8 fvmCvflmPtl 18 
                 +v+ +flm  l
  KKY16216.1 282 YVVYIFLMAGL 292
                 79999***876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.49
# Mc/sec: 3295.44
//
Query:       KKY16217.1  [L=184]
Description: hypothetical protein UCRPC4_g05980 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1442.58
//
Query:       KKY16218.1  [L=458]
Description: putative ubiquinol-cytochrome c reductase complex core protein 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-20   72.1   0.3    8.9e-20   71.2   0.0    1.7  2  Peptidase_M16    Insulinase (Peptidase family M16)
      2e-11   44.2   0.0    3.3e-11   43.5   0.0    1.4  1  Peptidase_M16_C  Peptidase M16 inactive domain


Domain annotation for each model (and alignments):
>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   9.9e-24   8.9e-20       4     128 ..      51     165 ..      48     192 .. 0.83
   2 ?   -3.2   0.1      0.82   7.4e+03      73     104 ..     406     437 ..     403     442 .. 0.72

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 9.9e-24
                    EEE-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHSBT CS
  Peptidase_M16   4 lesdppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkypsnklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfkapl 99 
                    + +d+pa+t+++++v +aG ry p   +GlA  le++afk+T+k+++ ++++e+e lGg lnA+ sren+v ++++l++dl++  ++la+v+ +++
     KKY16218.1  51 S-RDTPAPTATLAVVAKAGTRYQPL--PGLADGLEKFAFKSTSKRSAVRITREAELLGGVLNAYHSRENIVLQAKFLKEDLPYFAELLAEVISKTK 143
                    3.4559****************995..6*******************************************************************9 PP

                    TSHHHHHHHHHHHHHHHHHHCCHHHHHHH CS
  Peptidase_M16 100 leesevererkvvekeveavdaepekvve 128
                     ++ e  +       ev+ v +  +k  +
     KKY16218.1 144 YSRFEYAE-------EVARVVKLAQKETL 165
                    99999999.......44444444433222 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.82
                    EEEEEEEEGGGHHHHHHHHHHHHHSBTTSHHH CS
  Peptidase_M16  73 tvYyvevlskdlekaldvladvfkaplleese 104
                     +++v+ ++k+l+k+ d      +++lle+++
     KKY16218.1 406 KAFQVDEAAKSLDKVTDASVKSAAKSLLESKA 437
                    57888888888888888877777777777766 PP

>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   3.6e-15   3.3e-11       1     181 [.     200     377 ..     200     379 .. 0.90

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 3.6e-15
                      CH-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECT..CT CS
  Peptidase_M16_C   1 sltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkldeeqahlslafegpsk..en 92 
                      +++ e l+++  k Y   n+ +a+ G  + eel k+++++f+d  + +         p +p ++ +++ ++ +     + + +af g s   + 
       KKY16218.1 200 YISEETLQDYASKAYATGNIAVAANG-ATSEELGKWVNEFFKDTFSGS-------ALPSQPSKYYGGEERIAHAG--GNTMVIAFNGSSSftSG 283
                      58899*********************.9999************99543.......34455567999999999999..67777777777776699 PP

                      HTTHHHHHHHHHHHHSS......TTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHTS-HHHHHHHH CS
  Peptidase_M16_C  93 deddlalavlntlLggg......mesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevilkelrklkkeglteeelerak 180
                            + vl+ lLgg+      + ++L ++    e ++  v   n  y+d glf+is++++  +++++ + ++++l+k++  +++ ee+++ak
       KKY16218.1 284 SSYKPEIPVLAALLGGEsaikwsPGFSLLSKAS-AEFPGVKVKTTNAAYSDAGLFYISLSGNAPQIAKASKNVVDTLKKVAAGEISSEEISKAK 376
                      9999999*************9998888888888.899999*****************************************************9 PP

                      H CS
  Peptidase_M16_C 181 n 181
                      +
       KKY16218.1 377 A 377
                      7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 2901.62
//
Query:       KKY16219.1  [L=511]
Description: putative dna directed rna polymerase iii subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-32  111.7   2.9    4.9e-27   95.3   1.7    2.1  2  RNA_pol_Rpc82  RNA polymerase III subunit RPC82
     0.0013   18.6   2.5     0.0014   18.4   1.0    1.8  2  TFIIE_alpha    TFIIE alpha subunit


Domain annotation for each model (and alignments):
>> RNA_pol_Rpc82  RNA polymerase III subunit RPC82
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   1.7   5.5e-31   4.9e-27       2     236 ..      16     322 ..      15     324 .. 0.80
   2 !   15.7   0.0   1.1e-06    0.0096     103     170 ..     332     389 ..     325     415 .. 0.87

  Alignments for each domain:
  == domain 1  score: 95.3 bits;  conditional E-value: 5.5e-31
                    HHHHHHTTSSEEESSSTTTS-HHHHHHHHHHHTHTTSSSSSSSSTHHHHHHHHHHHHHHHHHHHHHHHSGT..........T..TTCETSSSSSEE CS
  RNA_pol_Rpc82   2 sfvkLveagflqrvpslhfrpiedlwnalyeeelkktprssttseikkkaeakekiktelrdlresseslkkkeg......rstadstsngtarKr 91 
                    ++++L+ea f+q+v s hfr  +d  +  ++++ + +    + ++ k ++e ++ ++ e+++  es+   ++++       ++tads    +arKr
     KKY16219.1  16 ALERLAEADFIQKVRSAHFRNDADNRDEAERHVSSTQV-MINAKGKKMQEEFDMAVDREIERRKESTFPRSTFHSrpinglKRTADSSNDHHARKR 110
                    689*****************999999888877766665.888888888888888888888776666655555555788888888887666667777 PP

                    ....................E-TSSEEEE-SHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHTSTSS-GSS-TTS.....HHHHHHTTTCSCS CS
  RNA_pol_Rpc82  92 rk..............etealdpglvlriNlerflvhlRdeaLvqlaksrigettaevyeaaLklleersprlsadll.....leeedkksitfta 168
                     +               +  +  ++++++N+++f v +R+++Lv+la++ +g+ +a+vy++aL+ +e  + r++++ +      e +d ++  + +
     KKY16219.1 111 SRladgvagdshdaneADIGPAGDIIVQVNHSKFSVLMRNQRLVSLAEQTVGRPSAKVYRTALRQVEHATLRCRSQ-SallapGEPSDHSTPYIDV 205
                    66**********988655567899****************************************************.5599*99************ PP

                    STHHHH-.STT-----------..--------------.....................-----------.......................... CS
  RNA_pol_Rpc82 169 ndiaral.pksldlsksigKrk..ssnssaaekkklkt.....................eeseeeseeng.......................... 214
                    + + r++ p+++ l +++ + +  ++++s+++ + +                       e                                    
     KKY16219.1 206 DNLVREVdPAKIQLGGTVAQVTskQNDTSEPRVQPVVRrkrppdhdrdhsededvdevdE---------Hgniseidhdsedeaadrayrpnnhrl 292
                    ******************555554444444444444334667788775543322222330.........134556666666667777788888999 PP

                    ........---HHHHHHHHHHHHHSSSSSS CS
  RNA_pol_Rpc82 215 ........qarlslieqhLklLasdslefl 236
                             ++ + ++qhL lLa+ + +fl
     KKY16219.1 293 ngtytngnTSQYEKVMQHLHLLAEAPEGFL 322
                    9******9999***************9998 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.1e-06
                    EEEE-SHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHTSTSS-GSS-TTSHHHHHHTTTCSCSST CS
  RNA_pol_Rpc82 103 vlriNlerflvhlRdeaLvqlaksrigettaevyeaaLklleersprlsadllleeedkksitftand 170
                    +++i+++++ ++lR+++L +++ +r g ++   ++++ k    + ++l++             ++a+d
     KKY16219.1 332 SWQIDYDKLSAELRNQQLFSIIFDRFGNVALRLVRVMMKKGKLDEKSLQEI----------ALMSAKD 389
                    5*************************************9988888877766..........4444444 PP

>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.94   8.4e+03      46      62 ..      15      31 ..       9      41 .. 0.75
   2 !   18.4   1.0   1.6e-07    0.0014       6      95 ..     352     445 ..     348     455 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.94
                 HHHHHHHHCTSEEEEEE CS
  TFIIE_alpha 46 klLnrLyearlvkykrr 62
                  +L rL ea +++ +r+
   KKY16219.1 15 TALERLAEADFIQKVRS 31
                 67889999999987776 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.6e-07
                  HHHHCS-HHHHHHHHHHHCTTSEBHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEEEE.EETTTEEEE..EEEEEECCCHCC.CHHHHHHHHHHH CS
  TFIIE_alpha   6 vvrkfygeeavlvldvLlekgevteedlakelkidlnelrklLnrLyearlvkykrr.rdeekswyk..yywrinyeklvd.vvkrkleevvkk 95 
                  +++  +g+ a   + v+++kg++ e  l++   +  + lr+ L+ L+ a++ + +   r+++ +  +  y w+ + +++   v+ +  + +++ 
   KKY16219.1 352 IIFDRFGNVALRLVRVMMKKGKLDEKSLQEIALMSAKDLRQTLAMLKAAGFLELQEVpRENQRQPSRtiYLWFYDADRVRRkVIEDLYKTMARI 445
                  899999*99999****************************************998642665554433227788888877641444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       926  (0.0516482); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3344.16
//
Query:       KKY16220.1  [L=489]
Description: hypothetical protein UCRPC4_g05983 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3449.34
//
Query:       KKY16221.1  [L=1301]
Description: putative wd repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-06   29.2   5.6      0.083   13.8   0.0    5.7  5  WD40      WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.07   13.0   0.1         13    5.6   0.0    3.1  3  eIF2A     Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.3     0.079   7.1e+02       9      24 ..     682     696 ..     674     713 .. 0.65
   2 !   13.8   0.0   9.2e-06     0.083      12      38 .]     753     780 ..     726     780 .. 0.73
   3 ?    0.9   0.0      0.11   9.9e+02      12      28 ..     913     929 ..     902     951 .. 0.77
   4 ?    2.5   0.0     0.035   3.1e+02      19      38 .]     975     994 ..     957     994 .. 0.80
   5 !    7.4   0.0   0.00098       8.8      17      38 .]    1030    1052 ..    1008    1052 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.079
                 SSSSEEEEEEETTSSE CS
        WD40   9 GHssvtslafspdgaw 24 
                  H +vt++ +s+ g+ 
  KKY16221.1 682 SH-DVTHVTWSSTGTK 696
                 34.6****77777665 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 9.2e-06
                 SEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40  12 svtslafspdgawla.sGsdDgtvriWd 38 
                 ++t++++s++g+ ++ ++++D+tv iWd
  KKY16221.1 753 PITAIQWSKSGRDILyTAGYDKTVNIWD 780
                 39***999999997668877*******9 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.11
                 SEEEEEEETTSSEEEEE CS
        WD40  12 svtslafspdgawlasG 28 
                 +v ++a++p  +++a++
  KKY16221.1 913 NVFDIAWHPTDRLFATA 929
                 3999*********9984 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.035
                 ETTSSEEEEEETTSEEEEEE CS
        WD40  19 spdgawlasGsdDgtvriWd 38 
                 + d++++a++  Dg+ +++d
  KKY16221.1 975 PFDSNYIAASATDGSTYVYD 994
                 678999997767***99998 PP

  == domain 5  score: 7.4 bits;  conditional E-value: 0.00098
                  E.EETTSSEEEEEETTSEEEEEE CS
        WD40   17 a.fspdgawlasGsdDgtvriWd 38  
                  + + + ga + +G+ Dg v+ Wd
  KKY16221.1 1030 SlWGQRGAKFYTGGSDGVVKQWD 1052
                  256667777899977*******9 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0    0.0071        64      60      91 ..     752     782 ..     681     826 .. 0.71
   2 ?    5.6   0.0    0.0014        13     123     165 ..     888     933 ..     884     950 .. 0.79
   3 ?   -2.5   0.0      0.43   3.8e+03      79     116 ..     941     981 ..     938     996 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0071
                 S.EEEEEE-TTSS-EEEEESSSSCEEEEEECS CS
       eIF2A  60 gpihdvaWspkskefaviyGkmpakvslfdlk 91 
                  pi +++Ws+++++++   G+ +++v+++d+ 
  KKY16221.1 752 QPITAIQWSKSGRDILYTAGY-DKTVNIWDVS 782
                 579999999999999999997.5677777764 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0014
                 SS-EEEEEETT..TTEEEEEEE-.TT--EEEE-TTSSEEEEEE-TT CS
       eIF2A 123 laGeleiwdvk..kkkkiakaea.anatlvewspdgryvlTattap 165
                 l+G+l++w+ +  + ++++   + +n  ++ w+p++r+++Ta  ap
  KKY16221.1 888 LEGSLALWQLTpsQADHVKVSPCsQNVFDIAWHPTDRLFATANAAP 933
                 789999999887666666655541456689************9998 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.43
                 SSSSCEEEEEECS.CEEE..EEEEEES--EEEE-TTSSEEE CS
       eIF2A  79 Gkmpakvslfdlk.vkvi..skleeqkrNtiffspkgklvl 116
                 G++ + + ++d k v+ +  ++  +   Nt+ f+p++   +
  KKY16221.1 941 GHVRSMIRVYDPKqVSRLieYDCPAVDLNTVSFCPFDSNYI 981
                 55566777788755444411456678899999999986444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1207  (0.0673211); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.93u 0.28s 00:00:01.21 Elapsed: 00:00:00.47
# Mc/sec: 8373.01
//
Query:       KKY16222.1  [L=327]
Description: putative peroxisomal membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-50  168.1   5.1    4.5e-17   61.8   0.1    3.2  3  Mito_carr  Mitochondrial carrier protein
  ------ inclusion threshold ------
      0.044   14.1   0.5        2.3    8.6   0.1    2.8  2  TadE       TadE-like protein
      0.065   13.2   0.0       0.24   11.4   0.0    2.0  1  UcrQ       UcrQ family


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.1   1.1e-19   6.5e-16       4      95 ..      25     112 ..      22     114 .. 0.94
   2 !   61.8   0.1   7.5e-21   4.5e-17       2      96 ..     123     225 ..     122     226 .. 0.84
   3 !   49.8   0.2     4e-17   2.4e-13       4      92 ..     229     314 ..     226     319 .. 0.92

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 1.1e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                   +++ l+G+ +g+++  +t+Pl ++ tr q+++++sk+     +l ++k+i+  eG+ gly+Gl+ +l++++++++++   ye ++  + k
  KKY16222.1  25 DNVAHALSGAGGGLLSMALTYPLITLSTRAQVESTRSKQP----LLATIKTIIDREGFEGLYSGLSSALFGISVTNFVYYYWYEWTRSAFEK 112
                 57899*******************************9884....9******************************************99977 PP

  == domain 2  score: 61.8 bits;  conditional E-value: 7.5e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS.........HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   2 elsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa.........ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkr 91 
                 +l+++++++aG++ag++++l+t+P++vv tr+ + kk++++   ++         ++ +l  ++keeG  +l+ G+lp+l+ v+ +  l+ +++e+lk+
  KKY16222.1 123 KLTTVESMIAGAIAGSATVLITNPIWVVNTRMTARKKEATEGDLESqskkkakasTVGTLLALIKEEGPQALFAGVLPALILVI-NPILQYTIFEQLKN 220
                 678999****************************666533322222333344457***************************99.************** PP

                 HHCTT CS
   Mito_carr  92 lllkk 96 
                 ++ kk
  KKY16222.1 221 VVEKK 225
                 99876 PP

  == domain 3  score: 49.8 bits;  conditional E-value: 4e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrl 92 
                 +++  +  G++++ +at++t+P  +vK r  +++k +k+ +   +   lk+i+ eeG +gly G++p++ +++ ++a  f++ ++l ++
  KKY16222.1 229 TPTDAFYLGAFGKFAATTITYPYLTVKSRAHVAGKDAKNYG---MYGSLKRIVDEEGWAGLYNGIGPKVSQSVLTAAFLFAFKDVLYDM 314
                 56778999****************************99866...*************************************99988766 PP

>> TadE  TadE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.026   1.6e+02      22      43 .]      98     119 ..      89     119 .. 0.87
   2 ?    8.6   0.1   0.00038       2.3       7      35 ..     195     223 ..     194     224 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.026
        TadE  22 iefgrylyarqtlnnAAreaAR 43 
                 +++ +y ++r++ + AA  a R
  KKY16222.1  98 VYYYWYEWTRSAFEKAALKAGR 119
                 7899999**********98876 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00038
        TadE   7 FALvlPlllllllgiiefgrylyarqtln 35 
                 FA vlP l+l++  i+++ ++ +++++++
  KKY16222.1 195 FAGVLPALILVINPILQYTIFEQLKNVVE 223
                 999**********************9996 PP

>> UcrQ  UcrQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     4e-05      0.24      42      76 ..      86     120 ..      75     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4e-05
                 TTTHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHH CS
        UcrQ  42 ksqvlyvlppfiiayliykwakeeneylnrKagrd 76 
                 +s ++ + +  +++y++y+w+++ +e++  Kagr+
  KKY16222.1  86 SSALFGISVTNFVYYYWYEWTRSAFEKAALKAGRA 120
                 5677778888899********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.33s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 1950.71
//
Query:       KKY16223.1  [L=537]
Description: putative thiamine transporter thi9 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-46  158.3  45.1    3.5e-46  157.9  45.1    1.1  1  AA_permease_2  Amino acid permease
    9.5e-17   60.7  35.5    1.3e-16   60.3  35.5    1.1  1  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.9  45.1   3.9e-50   3.5e-46       2     424 ..      49     496 ..      48     499 .. 0.83

  Alignments for each domain:
  == domain 1  score: 157.9 bits;  conditional E-value: 3.9e-50
  AA_permease_2   2 sllsafalvigsvigsgifvknlaasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaa....fgkkvaflsawfnwfayvpvla 93 
                    + ++ ++ +++ v g+++++  ++++ggp +++  w++v+ + + v++++aE+++ +p+ gGiy +++++    +g+++a+++aw+nw ++v v++
     KKY16223.1  49 EGWASIFTSMNFVSGIPVLFGWVMYTGGPEAAFANWTMVGGLAVVVSFAMAEIAAGFPTAGGIYFWSYRLggeeWGPFLAWMTAWWNWAGWVTVVP 144
                    568899999999999999998877777765555555544444458********777**************99999********************* PP

  AA_permease_2  94 silsvaasyllnalgp.....dlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffp 184
                    ++   a+++ll+al       ++ g+ w++ l+ ++ +++ ++ ni + + ++++    +i+ ++l++++ i+++  + +++ +s      d f++
     KKY16223.1 145 GVQQGATGFLLSALEIqypnaSVLGKGWFSWLLTSIGMLFAMAPNIWNQRVLKWYFRAAIIIYFVLFFLTWIWIPASV-SPNFASKD-EVFDRFVN 238
                    *************9764445555566******************************9988888877777777777655.67777633.22223333 PP

  AA_permease_2 185 ngwpgv..........llgllivlwsfdGfesaanvsee.vkk.kdvpkaifigllivlvlyllvniaflgvvpd.deianlsnlgsvaalffeav 267
                    +++ g+            g+l  +w+f+Gf+++a++see v    +v + + ++ + ++ l + + i++l++++d d+i n s +++ a+ ++++v
     KKY16223.1 239 GINGGSkkqasdpycwTIGILFGAWVFYGFDASAHISEEtVSAsENVARSMWLATVSSWSLSVPLLILILFCIQDlDGIINGSYSNNWAEFLVQTV 334
                    3333335555566677779999*****************866668******************************99998877788889******* PP

  AA_permease_2 268 ggkvvaiivvilialsllgaintavigssrvlealardgvlP..rffakvn.kfgspiraiiltaivslillllfllassaaynfllsvsslglii 360
                    g+k + +i++ ++++ +  a  ++++++ rv +a++rd+vlP  ++f++   ++  p+ a  l++ +s+il+ ++++ s+ a+++++++++++ ++
     KKY16223.1 335 GKKGAVGILS-VLWIDSTCATASCFMSAQRVTYAISRDNVLPgsKWFKQLTpEKRMPVHAGLLVYAISVILTTAVIG-SEVAFTAITATATIATNF 428
                    *655555555.78888888899*****************************99***************999988876.69**************** PP

  AA_permease_2 361 syllliigalilrkkrphlkrpgk.....ilvaiigalfllfllvalffppkgpatqssliytiiltva 424
                    syl++i+++  + ++  +   p+      ++++i++  ++ + +++l +p+  p+t+++l+y+ +++++
     KKY16223.1 429 SYLIPIAARHTIGRNHFEP-APWNlgrfsVPIGIVASSYIGIECIVLLLPQYYPVTGQTLNYAPVCIGI 496
                    ******8886665554433.3222244559*********************************555544 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3  35.5   1.5e-20   1.3e-16      18     449 ..      67     492 ..      55     515 .. 0.72

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 1.5e-20
  AA_permease  18 glgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGln....ylfswitvlaleltaasiliqfwelvtdlp 111
                    g+v  ++Gp +a+  + ++g   + v  +++eia  +p +gg+y+++ r  g+e+G + +++     +  w+tv++   ++ +   +f+ +  ++ 
   KKY16223.1  67 LFGWVMYTGGPEAAFANWTMVGGLAVVVSFAMAEIAAGFPTAGGIYFWSYRLGGEEWGPFLAWMtawwNWAGWVTVVP---GVQQGATGFLLSALEIQ 161
                  569*************************************************************95554444555554...33333333332222222 PP

  AA_permease 112 kawvt..............gavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfa...k 192
                  +  +               g++f ++  i n       +   + +   +ii+++ f++  i++ a+  pn +      +d+++   + +++g     k
   KKY16223.1 162 YPNASvlgkgwfswlltsiGMLFAMAPNIWN------QRVLKWYFRAAIIIYFVLFFLTWIWIPASVSPNFA-----SKDEVF---DRFVNGINggsK 245
                  2222233555565333333333333333333......33334445555555555555555666666665555.....333333...223333222114 PP

  AA_permease 193 eeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlap 290
                  ++ +  + + +++ + +  f G+ + a i++E+ + ++++ +++  + +    + v +l+li +++++ d g++n+s s       f++ +  +  a+
   KKY16223.1 246 KQASDPYCWTIGILFGAWVFYGFDASAHISEETVSASENVARSMWLATVSSWSLSVPLLILILFCIQDLD-GIINGSYSN--NWAEFLVQTVGKKGAV 340
                  4555677899999999999***********************************************9888.****99988..8888888888888888 PP

  AA_permease 291 linaviltaalssansslysasRvlyslakdglaP..kvlkkvs.krgvPlraillsmiisllalllaslnlaapivfnfllaisali.glivwllii 384
                   i  v+ +  + +  s+ +sa Rv y+ ++d+++P  k++k ++  ++ P+ a ll+++is+++   a + ++  ++f+ + a ++++ +++ ++ i+
   KKY16223.1 341 GILSVLWIDSTCATASCFMSAQRVTYAISRDNVLPgsKWFKQLTpEKRMPVHAGLLVYAISVILT-TAVIGSE--VAFTAITATATIAtNFSYLIPIA 435
                  999999999999999**********************999987626678**************99.8888888..9**99999999872577777799 PP

  AA_permease 385 lsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasf 449
                  + ++  R+ ++   +++       ++ + + i++   + i +++l l +y +   +++++++a +
   KKY16223.1 436 ARHTIGRNHFEPAPWNLG------RFSVPIGIVASSYIGIECIVLLLPQYYP--VTGQTLNYAPV 492
                  99***********99773......3444444555555555555555554444..33345555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3678.94
//
Query:       KKY16224.1  [L=109]
Description: hypothetical protein UCRPC4_g05987 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-05   24.9   0.1    2.6e-05   24.3   0.1    1.3  1  Ring_hydroxyl_A  Ring hydroxylating alpha subunit (catalytic 


Domain annotation for each model (and alignments):
>> Ring_hydroxyl_A  Ring hydroxylating alpha subunit (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   1.4e-09   2.6e-05     156     212 ..       6      61 ..       1      64 [. 0.86

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.4e-09
                      HHHHHHHHHCSTTHHHHHHHHHHHHHHTTSTTTSBSCCCSCSSHHHHHHHHHHHHHH CS
  Ring_hydroxyl_A 156 elaavvdrtfgvveeeDaelceevQqglrsrgyepgpvlsrqEeavrhFhewvrdrv 212
                      ++++ +++ ++ v+ eD+elce+ Q++l+++ y +g + +  E +v  ++++v + v
       KKY16224.1   6 AFEKYYQFVRQ-VALEDFELCERAQENLEKGIYCEGILNPVKESGVAYYQQRVLELV 61 
                      55666666656.*********************999999*************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.30s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 706.82
//
Query:       KKY16225.1  [L=212]
Description: putative gtp-binding protein ypt1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-59  199.7   0.3    2.9e-59  199.3   0.3    1.2  1  Ras          Ras family
    8.8e-36  122.8   0.1    1.4e-35  122.1   0.1    1.3  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    2.3e-16   59.7   0.1      3e-16   59.4   0.1    1.2  1  Arf          ADP-ribosylation factor family
    2.6e-05   24.3   0.0    0.00012   22.1   0.0    1.9  2  MMR_HSR1     50S ribosome-binding GTPase
    0.00019   21.0   0.4    0.00069   19.2   0.2    1.9  2  GTP_EFTU     Elongation factor Tu GTP binding domain
    0.00025   20.5   0.0    0.00029   20.3   0.0    1.2  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
    0.00066   19.2   0.0      0.001   18.5   0.0    1.2  1  SRPRB        Signal recognition particle receptor beta subuni
    0.00076   19.4   0.3       0.14   12.1   0.0    2.4  2  RsgA_GTPase  RsgA GTPase
     0.0094   16.3   0.0      0.013   15.9   0.0    1.3  1  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
      0.012   15.1   0.0       0.13   11.8   0.0    2.1  1  FeoB_N       Ferrous iron transport protein B
      0.027   14.9   0.0       0.23   11.9   0.0    2.0  2  AAA          ATPase family associated with various cellular a
      0.049   13.9   0.0      0.078   13.2   0.0    1.7  1  AAA_22       AAA domain
      0.058   13.1   0.0       0.15   11.8   0.0    1.7  1  AAA_29       P-loop containing region of AAA domain
      0.058   13.0   0.3       0.67    9.5   0.3    2.2  1  AAA_25       AAA domain
      0.075   13.0   0.1       0.15   12.1   0.0    1.7  2  AAA_5        AAA domain (dynein-related subfamily)
      0.076   12.3   0.0        0.2   10.9   0.0    1.6  2  Septin       Septin
      0.099   12.2   0.0       0.19   11.2   0.0    1.4  1  AAA_7        P-loop containing dynein motor region
       0.11   13.0   0.1       0.22   12.0   0.1    1.7  1  ABC_tran     ABC transporter
       0.11   11.8   0.0       0.29   10.5   0.0    1.6  2  TniB         Bacterial TniB protein


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.3   0.3   3.1e-62   2.9e-59       1     161 [.      29     181 ..      29     182 .. 0.98

  Alignments for each domain:
  == domain 1  score: 199.3 bits;  conditional E-value: 3.1e-62
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 Kl+l+Gds+vGK++lllrf++d+++e+y+sTigvdf++++ie+dgk+vkl+iwDTAGqe+f++++++yyr+a+gi +vyd+t+ +sf+nvk+w++ei r
  KKY16225.1  29 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDR 127
                 89************************************************************************************************* PP

                 HSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                 +a+e v+ +LvGnK+D+++         +e+a++lg++fletSAk++ nve+af +++r+i+
  KKY16225.1 128 YATEGVNKLLVGNKSDMTD--------KKEFADSLGIPFLETSAKNASNVEQAFLTMARQIK 181
                 *****************98........4689****************************996 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.1   0.1   1.5e-38   1.4e-35       1     120 []      29     144 ..      29     144 .. 0.91

  Alignments for each domain:
  == domain 1  score: 122.1 bits;  conditional E-value: 1.5e-38
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K++l+GdsgvGK++ll rf +d+++e++ stigvdf+ +++ +++g       k+vkl+iWDtaGqerfr+++++y+r+a+ +++vyd    +s++n+k
  KKY16225.1  29 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI-ELDG-------KTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDvtdMDSFNNVK 119
                 89**********************************98876.4444.......689*******************************965455789*** PP

                 HHHHHHHHHCSSS.-EEEEEE-TTT CS
         Roc  97 eWlkelkkvagks.pvilvgnkiDl 120
                 +Wl+e++++a++  + +lvgnk D+
  KKY16225.1 120 QWLQEIDRYATEGvNKLLVGNKSDM 144
                 *********9986478*******96 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.1   3.1e-19     3e-16      15     133 ..      28     150 ..      20     196 .. 0.85

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 3.1e-19
                 EEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHC CS
         Arf  15 lrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkall 108
                 +++ll+G  + GK+ +l ++ ++  ++  + Tig  f+++++e   k++k+++wD  Gqe+ R + ++Y++  +++  v D++d + +++ k+ L+++ 
  KKY16225.1  28 FKLLLIGDSGVGKSCLLLRFADDTYTEsYISTIGvdFKIRTIELdgKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEI- 125
                 799*******************99877578898744678887776699************************************************97. PP

                 TSGCCTTSEEEEEEE-TTSTTSS-H CS
         Arf 109 eeeelkevallvlaNKqDlpealse 133
                 ++   + v  l+++NK D+++  + 
  KKY16225.1 126 DRYATEGVNKLLVGNKSDMTDKKEF 150
                 6778899************986543 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.3e-07   0.00012       2     107 ..      30     128 ..      29     141 .. 0.64
   2 ?    0.1   0.0      0.89   8.4e+02      48      74 ..     148     177 ..     129     198 .. 0.63

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.3e-07
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT..EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg..keielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldeele 98 
                  +++G + vGKS L+ +  +++   s +     d + ++++l+g   +++++Dt+G  e   + + ++ ++ +   a+ i++v d++ + ++   ++++
  KKY16225.1  30 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGktVKLQIWDTAG-QE---RFRTITSSYYR--GAHGICVVYDVT-D-MDSF-NNVK 119
                 579****************986655555555555555555544433679*******.54...23355666653..489*******77.4.4444.6666 PP

                 HHHHHTTSE CS
    MMR_HSR1  99 elleeakkp 107
                 ++l+e ++ 
  KKY16225.1 120 QWLQEIDRY 128
                 666553333 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.89
                 EEEEECGGCS..S.HHHHHHHHHHHHHHHH CS
    MMR_HSR1  48 ielvDtpGli..e.gaseekglgkaflale 74 
                  e++D  G+   e +a++  ++++afl + 
  KKY16225.1 148 KEFADSLGIPflEtSAKNASNVEQAFLTMA 177
                 467788884233333444446777776543 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         2   1.9e+03       6      22 ..      30      46 ..      27      59 .. 0.79
   2 !   19.2   0.2   7.3e-07   0.00069      56     139 ..      64     150 ..      46     189 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2
                EEEEESTTSSHHHHHHH CS
    GTP_EFTU  6 igiighvDhGKtTLtdr 22
                + +ig+   GK++L+ r
  KKY16225.1 30 LLLIGDSGVGKSCLLLR 46
                578999999***99865 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 7.3e-07
                 SSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB....STHHHHHHHHHHHHTTTEEEEEEESCGST.HHHH CS
    GTP_EFTU  56 iksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG....vepqteevlrlalkegvpiivfiNKmDrl.kael 139
                  k+ +i+l+  +k+ ++++ Dt G + F   ++  +r ++g ++v d+++        q  + +    +egv+  ++ NK D++ k+e+
  KKY16225.1  64 FKIRTIELD--GKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMdsfnNVKQWLQEIDRYATEGVNKLLVGNKSDMTdKKEF 150
                 455566666..*************************************9764444333444444555679999**********964444 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   3.1e-07   0.00029       1      87 [.      29     110 ..      29     175 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.1e-07
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiF.dnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDve 87 
                 k+LL+G sg GK+++      d y+   + ++g+  +++  e+   + ++l++wD  Gqe+f + + s      +r    +  V Dv+
  KKY16225.1  29 KLLLIGDSGVGKSCLLLRFAdDTYTESYISTIGVDFKIRTIEL-DGKTVKLQIWDTAGQERFRTITSS-----YYRGAHGICVVYDVT 110
                 89************98664414455555666666666666666.35678************9876533.....333333333344444 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.1e-06     0.001       6     125 ..      30     145 ..      27     151 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.1e-06
                 EEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG.....GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHHH CS
       SRPRB   6 vllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv..ksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllye 101
                 +ll+G s  GK  l+ r   d+++++++S     +  ++   + k  kl++ D  G+e++r+  + +    + ++g+  v D t d    ++v  +l e
  KKY16225.1  30 LLLIGDSGVGKSCLLLRFADDTYTESYISTiGVDFKIRTieLDGKTVKLQIWDTAGQERFRTITSSY---YRGAHGICVVYDVT-DMDSFNNVKQWLQE 124
                 79***************************97667777663345677788899*********865554...78899999888876.66778888889988 PP

                 HHHHHHHHTT---EEEEEE-TTST CS
       SRPRB 102 illiteklkdavdiliACnKqelf 125
                 i    +   ++v+ l+  nK++++
  KKY16225.1 125 IDRYAT---EGVNKLLVGNKSDMT 145
                 866555...788888888888876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00015      0.14     103     122 ..      31      50 ..      28     102 .. 0.84
   2 ?    5.3   0.1     0.018        17      43     102 ..     129     181 ..     103     201 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
                  EEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpe 122
                  +l+G SGvGKS L+ +++ +
   KKY16225.1  31 LLIGDSGVGKSCLLLRFADD 50 
                  79***********9877765 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.018
                  HHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSEE CS
  RsgA_GTPase  43 eekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkdkts 102
                   ++g++ ++v nK D+++++e          +lg+++l +sak+ +++e+    ++ ++ 
   KKY16225.1 129 ATEGVNKLLVGNKSDMTDKKE-------FADSLGIPFLETSAKNASNVEQAFLTMARQIK 181
                  456778888888888888777.......55566666666666666666655544444444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-05     0.013      27     106 ..      30     130 ..      29     189 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-05
      AAA_16  27 vllsGesGvGKsslvrellr.alekd...........ggiflrgkcdqlesaipysalaqalareellrqllde.................aesaelea 96 
                 +ll+G+sGvGKs l+ ++++  ++++           + i l gk+++l       ++++++ + e +r + +                  ++ +++ +
  KKY16225.1  30 LLLIGDSGVGKSCLLLRFADdTYTESyistigvdfkiRTIELDGKTVKL-------QIWDTAGQ-ERFRTITSSyyrgahgicvvydvtdmDSFNNVKQ 120
                 79*************7777625555555555554433222255555555.......67777745.7777777666667777777777766677777777 PP

      AAA_16  97 wrekleeala 106
                 w +++++ ++
  KKY16225.1 121 WLQEIDRYAT 130
                 7777777766 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00014      0.13       3     151 ..      30     171 ..      28     176 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEE..EEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGGHHHHHHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkev..eivDlPGiYslsayseeekvardflleeepdvvvnvvdatnlernLyLtl 99 
                 + l+G+  vGk+ l+ + ++ + + +  + + v+ k  +++l+gk+v  +i D  G   +       +++ ++   + ++ +  v d t ++    +  
  KKY16225.1  30 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVklQIWDTAGQERF------RTITSSYY--RGAHGICVVYDVTDMDSFNNVKQ 120
                 679999999999999999999999898999999999999888876551156666665444......45556665..45667888888888888888888 PP

                 HHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHH CS
      FeoB_N 100 qllelgvpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegiee 151
                  l e++      +n++ + +k+ +  d+k+++++Lg+p ++tsak+ +++e+
  KKY16225.1 121 WLQEIDRYATEGVNKLLVGNKSDM-TDKKEFADSLGIPFLETSAKNASNVEQ 171
                 899999999999999976666655.69*******************999987 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00024      0.23       1      90 [.      30     137 ..      30     151 .. 0.69
   2 ?    1.0   0.0      0.57   5.3e+02      17      55 ..     149     189 ..     145     196 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00024
                 EEEESSTTSSHHHHHHHHHHHH.............THEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTS.TSEEEE.EETGGGHHHHH..TTCCCHH CS
         AAA   1 vllyGppGtGKTllakavakel.............gvefleisgsell.skyvgesekkirelfkeakeka.kpsilf.iDEidalaksr..sgsesee 81 
                 +ll+G  G+GK+ l    a ++             +++ +e++g+++  + +  ++++++r + ++  + a + +++  + ++d++++ +   ++ ++ 
  KKY16225.1  30 LLLIGDSGVGKSCLLLRFADDTytesyistigvdfKIRTIELDGKTVKlQIWDTAGQERFRTITSSYYRGAhGICVVYdVTDMDSFNNVKqwLQEIDRY 128
                 69*******************644444444544446889999999999777889999999999999988885555555466777775555443334444 PP

                 HHHHHHHHH CS
         AAA  82 eervvnqLl 90 
                 +++ vn+Ll
  KKY16225.1 129 ATEGVNKLL 137
                 444444444 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.57
                 HHHHHHTHEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHH CS
         AAA  17 avakelgvefleisgsell..skyvgesekkirelfkeake 55 
                   a +lg++fle+s+++    ++ +  ++++i+e + +   
  KKY16225.1 149 EFADSLGIPFLETSAKNASnvEQAFLTMARQIKERMGTTTV 189
                 67889999999999988873344777777777777666555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.3e-05     0.078       8      37 ..      30      59 ..      29     188 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.3e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaee 37
                l+++G sG+GK+ ll r+++    e+++ +
  KKY16225.1 30 LLLIGDSGVGKSCLLLRFADDTYTESYIST 59
                689***************997755555544 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00016      0.15      25      39 ..      30      44 ..      22      45 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00016
      AAA_29 25 tlltGpsGsGKSTll 39
                 ll+G+sG+GKS ll
  KKY16225.1 30 LLLIGDSGVGKSCLL 44
                69**********997 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3   0.00072      0.67      36      61 ..      30      55 ..      21     190 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00072
      AAA_25 36 allaGapgtGKttlaldlalavatGk 61
                 ll+G++g+GK+ l+l  a ++ t +
  KKY16225.1 30 LLLIGDSGVGKSCLLLRFADDTYTES 55
                589*************9998887644 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00015      0.15       2      23 ..      30      51 ..      29     136 .. 0.91
   2 ?   -2.6   0.0       5.4   5.1e+03      41      60 ..     174     195 ..     159     203 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
                EEEE--SSSSHHHHHHHGGGGB CS
       AAA_5  2 vlLvGppGtgKselaerlaaal 23
                +lL+G++G+gKs l  r+a  +
  KKY16225.1 30 LLLIGDSGVGKSCLLLRFADDT 51
                89**************999866 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.4
                 HH--B--...........---- CS
       AAA_5  41 lkgrreik..ngttslvdsplv 60 
                 l++ r+ik  +gtt   ++p v
  KKY16225.1 174 LTMARQIKerMGTTTVNNKPTV 195
                 5555555555556655555555 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00021       0.2       5      71 ..      28      85 ..      25      97 .. 0.69
   2 ?   -2.8   0.0       3.1     3e+03      76      94 ..     167     185 ..     155     204 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00021
                EEEEEEEBTTSSCCCCCCTTSSSS------------------S-EEEEEEEEETTCEEEEEEEE--- CS
      Septin  5 ftlmvvGesglGkttlintlfetdlieeekleeasekkkktveikkkkvvieedgvklnltviDtpg 71
                f l+++G+sg+Gk+ l+  +  ++ +e+           +t+ ++ k  +ie dg  ++l++ Dt g
  KKY16225.1 28 FKLLLIGDSGVGKSCLLLRFADDTYTES---------YISTIGVDFKIRTIELDGKTVKLQIWDTAG 85
                89**************977655444433.........234445555555556666666777778876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.1
                 SSHHCCCHHHHHHHHHHHH CS
      Septin  76 vdnskswepiveyideqfe 94 
                  + ++++ +++++i+e++ 
  KKY16225.1 167 SNVEQAFLTMARQIKERMG 185
                 4445666666666666543 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0002      0.19      35      72 ..      29      67 ..      24      74 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0002
       AAA_7 35 pvllvGptGtGKtviikdllkkldkekyls.ltinfsaq 72
                ++ll+G++G+GK++++ ++ +   +e+y+s + + f+ +
  KKY16225.1 29 KLLLIGDSGVGKSCLLLRFADDTYTESYIStIGVDFKIR 67
                689***************888777777654155666655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00023      0.22      14      62 ..      30      77 ..      28     203 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00023
                EEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeig 62
                + ++G++G GKS Ll  +a  +  te  i   g d+k +++e   k ++
  KKY16225.1 30 LLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTVK 77
                679************99998875.6777755555555555554444444 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00031      0.29      37      60 ..      29      52 ..      22      72 .. 0.88
   2 ?   -2.7   0.0       3.4   3.2e+03     101     122 ..     163     184 ..     148     185 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00031
        TniB 37 nlllvGdsnnGKtmivekFarlhp 60
                +lll+Gds +GK+ ++ +Fa++  
  KKY16225.1 29 KLLLIGDSGVGKSCLLLRFADDTY 52
                689*****************8864 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.4
        TniB 101 rarvskleqqvlrllrelkvrv 122
                  +++s+ eq+ l++ r++k r+
  KKY16225.1 163 AKNASNVEQAFLTMARQIKERM 184
                 3456677888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      669  (0.0373138); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.51
# Mc/sec: 1255.26
//
Query:       KKY16226.1  [L=878]
Description: putative glutamyl aminopeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-79  266.3   1.0    3.4e-79  265.4   1.0    1.5  1  Peptidase_M1    Peptidase family M1 domain
    2.9e-77  260.3   0.2    7.7e-77  258.9   0.1    1.8  2  ERAP1_C         ERAP1-like C-terminal domain
    2.6e-39  135.4   0.0    4.8e-39  134.5   0.0    1.5  1  Peptidase_M1_N  Peptidase M1 N-terminal domain
  ------ inclusion threshold ------
      0.044   13.8   0.2       0.33   11.0   0.0    2.2  2  DUF45           Protein of unknown function DUF45


Domain annotation for each model (and alignments):
>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.4   1.0   7.6e-83   3.4e-79       1     218 []     251     468 ..     251     468 .. 1.00

  Alignments for each domain:
  == domain 1  score: 265.4 bits;  conditional E-value: 7.6e-83
                   HHHHHHHHHHHHHHHHHTS--SSSEEEEEEESSTTSSEEEETTEEEEEGGGC-SSTTTS-HHHHHHHHHHHHHHHHHHHBTTTEEESSGGGGHHHHH CS
  Peptidase_M1   1 yalevtkkllefleeyfkvpYplpkldlvalpdfsagAMEnwglityreelllvdpenssesdkrsvaeviaHElaHqWfGnlVtmkwWddlwLnEG 97 
                   +al+++ k++++++++f+ +Yp+pk d++a++df++gAMEnwglityr   +l+dpe+s++++++++a v+aHElaHqWfGnlVtm+wWd+lwLnE+
    KKY16226.1 251 FALDHAYKIIDLFSKTFGSDYPIPKADMLAVHDFAQGAMENWGLITYRAIDVLYDPEKSDAARQNRIAYVVAHELAHQWFGNLVTMNWWDELWLNES 347
                   79*********************************************************************************************** PP

                   HHHHHHHHHHHHHSCCCHCHHHHHHHCHHHHHHHHTSTTHHHSSGG-GSHHHHHHTSSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHCTTEEE CS
  Peptidase_M1  98 fatyleylildklepewevseqllleeveealsedaldeshpitqevekpseidevFdsiaYeKGasllrmlekllgeevFqkglksYlkefkykna 194
                   fat++ +  +d l+p+w++++q+l e+++ a+  d+l+ shpi++ v+++ e+d++Fd i+Y+KG+++lrml++++g + F +g+  Yl++++y+na
    KKY16226.1 348 FATWVGWWASDYLHPDWNIWDQFLSETASVAFGLDSLRASHPIHVPVKDALEVDQIFDVISYNKGSAVLRMLADYIGIDAFFEGIGIYLQKHAYGNA 444
                   ************************************************************************************************* PP

                   -HHHHHHHHHHCCCSCHHTHHHHH CS
  Peptidase_M1 195 etedlwdaleealnkdisevmdtw 218
                   +t++lw al+ea++kdi++++d w
    KKY16226.1 445 STSHLWAALSEASGKDITAFIDPW 468
                   **********************99 PP

>> ERAP1_C  ERAP1-like C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.45     2e+03       4      18 ..     109     123 ..     108     125 .. 0.86
   2 !  258.9   0.1   1.7e-80   7.7e-77       1     311 [.     541     852 ..     541     856 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.45
                 ESGGG-SSSEEEE-H CS
     ERAP1_C   4 lNdddtGyyrVnYde 18 
                  N d+ G+yr +Y  
  KKY16226.1 109 MNFDMCGFYRSKYKS 123
                 599**********65 PP

  == domain 2  score: 258.9 bits;  conditional E-value: 1.7e-80
                 -EEESGGG-SSSEEEE-HHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHGGG.GGGG--SHHHHHHHHHHHHHHHHHHT.TSTTHHH CS
     ERAP1_C   1 lvllNdddtGyyrVnYdeeslaalleqllskklspldRaglisdafalaragelsaadlldlllgylanEtdylvwsqalsqlatlkslls.adplyaa 98 
                 ++llN++++G++r+nY++++l +l++ +++k l++ d++gli da a+a+ag  ++a ll+ll+g+ +nEt+y+ ws++ + l++++ ++s + ++ ++
  KKY16226.1 541 FYLLNAGQKGFCRINYPPARLVKLGQ-AHHK-LETSDKIGLITDASAMAFAGFGTTAGLLSLLEGF-QNETSYMTWSAISDALGRCRYIFShNKKILNG 636
                 79************************.5566.**********************************.7**********************94455**** PP

                 HHHHHHHHHHHHHHHHHH..T.TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHCSTT.-S-HHHHHHHHHHHHHHS-HHHHHHHHHHHHC-SS CS
     ERAP1_C  99 lkaflrklleplaeklgw..epgeshldaqlrslllsaacaagdpevveearklfkawlegdd.lippdlrwavycalaanggeaewdallerykdtsa 194
                 lk+f++kl++p+ae++g   e +e +l+++lr+llls+a+ ag++e ++ a+++f++w++gd  +  p+ r  v+ a++angg+aew+a+ ++y +t++
  KKY16226.1 637 LKQFALKLVSPAAEQIGLefERQEVYLTTMLRKLLLSMAAGAGHKEIIAGAQERFQKWMSGDPhAFRPSARAFVFFAAVANGGQAEWEAVKNEYLTTND 735
                 *****************9444669************************************98866*****************************98888 PP

                 HHHHHHHHHHHCC-S-HHHHHHHHHHCTTT..S-GGGHHHHHHHH.HSTTHHHHHHHHHHHCHCCHHHHTSSTS.CHHHHHHHHHTT--SHHHHHHHHH CS
     ERAP1_C 195 psekeaalralaatpdpellerllnfvlesdevrnqdlrallaglannpegrellwefvkenwdalakrwsgge.ildrivkgllpgftseeelaeiea 292
                    k + l+al+ t++pel +++l+++l s++v+ q++++++ ++++n e+rellwef ke+w ++ +r++++  +l++++k  + +f+++e+ +++++
  KKY16226.1 736 MGAKATSLEALGRTKSPELTQKYLHMTL-SNDVKPQNMHSIVLAISRNNETRELLWEFTKEKWGEIFDRFGQNKvVLEKWIKCGFDRFSDPEKRQQVQE 833
                 677************************9.899*************999**********************9877788********************** PP

                 HHCHTT--GGGHHHHHHHH CS
     ERAP1_C 293 ffadkdtpglrrtlkqale 311
                 ff++kd +g +r+l  a +
  KKY16226.1 834 FFENKDIRGIDRALFVAYD 852
                 ************9976665 PP

>> Peptidase_M1_N  Peptidase M1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.5   0.0   1.1e-42   4.8e-39       1     186 []      14     211 ..      14     211 .. 0.86

  Alignments for each domain:
  == domain 1  score: 134.5 bits;  conditional E-value: 1.1e-42
                     EEEEEEEEEEEETT..TTEEEEEEEEEEEESS-ECEEEEEESSEEEECEEEEECTTCTCEEEEEEEECTTTTCEEEEECCEEETTCEEEEEEEEE CS
  Peptidase_M1_N   1 vpehYdldlkidlk..ektfkGsvtitlqlkeatseivldakdlkiksvslsaevksesvkidfkieqkdeelltiklkeslqqtskytLeieye 93 
                     vp hY+++l+  l     t++G v+i+++++ +t+ ++l++k+l+ ++  ++ + k  + + + + ++ de+  ti l+es   ++ + + i++ 
      KKY16226.1  14 VPVHYEISLTDLLFndPWTYHGLVKIHVKVQRSTRMVILNTKKLELQDTRILVDGKLVAESST-CSYDPDEQRATIALEESIP-EGDALIAINFI 106
                     5899*9999855543578****************************99999988887775555.567788888*******877.999******** PP

                     EE-BSSSSEEEEEEEEE...........TSCEEEEEEEE-TTTTGGGTS-B--STTSEBEEEEEEEEETTSEEEESSECCCEEEET.TCEEEEEE CS
  Peptidase_M1_N  94 gelndklaGlykstYtd...........kgekkvvvvTqfeatdARsafPCfDePsvKAtftisikapkeetalSnmpeeesekle.ngqkiteF 176
                     g +n ++ G+y+s+Y+            ++++ ++++Tqfea dAR+afPCfDeP+ KAtf+is+++p +++++Snmp+++s++ +  g k + F
      KKY16226.1 107 GCMNFDMCGFYRSKYKSdieptpgtakdNEGNYYMFSTQFEACDARQAFPCFDEPNLKATFDISLEVPGDQVVISNMPIKQSAPGKqIGTKLVSF 201
                     ***********888863333332233336777899************************************************98856899**** PP

                     EEEESBEGGG CS
  Peptidase_M1_N 177 eqtpkmstYL 186
                     e+tp+mstYL
      KKY16226.1 202 ERTPPMSTYL 211
                     *********9 PP

>> DUF45  Protein of unknown function DUF45
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.4e-05      0.33     161     179 ..     312     330 ..     288     332 .. 0.81
   2 ?   -0.2   0.1       0.2   8.9e+02      74     118 ..     756     803 ..     722     816 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.4e-05
       DUF45 161 appevidYVvvHElaHlle 179
                 a ++ i YVv+HElaH + 
  KKY16226.1 312 ARQNRIAYVVAHELAHQWF 330
                 567889**********875 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.2
       DUF45  74 kgk...easvklkreelelavkkeeeeeklrkaleewlrkeakeelee 118
                 ++      s + k ++ + +v++ +++++ r+ l+e+ +++  e++++
  KKY16226.1 756 QKYlhmTLSNDVKPQNMHSIVLAISRNNETRELLWEFTKEKWGEIFDR 803
                 4445555677888999999999*****************998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (878 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.54
# Mc/sec: 4920.72
//
Query:       KKY16227.1  [L=369]
Description: putative tfiih basal transcription factor complex p47 subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-67  227.2   0.0    1.8e-67  226.9   0.0    1.1  1  Ssl1      Ssl1-like
    1.8e-14   54.3   0.0    3.1e-14   53.5   0.0    1.4  1  VWA_2     von Willebrand factor type A domain


Domain annotation for each model (and alignments):
>> Ssl1  Ssl1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.9   0.0   2.1e-71   1.8e-67       1     193 []      93     297 ..      93     297 .. 0.94

  Alignments for each domain:
  == domain 1  score: 226.9 bits;  conditional E-value: 2.1e-71
                 EEE-SGGGGSSSSSS-HHHHHHHHHHHHHHHHHHHSTT-EEEEEEEETTEEEEEEEEES-HHHHHHHHHHHTTS......---S---HHHHHHHHHHHH CS
        Ssl1   1 vlDlsrameekdlkpsrlavviklleefveeffdqnPisqlgliavkdkkaekltelsGnprkhikaLkslrev......eakgepsLqnaLelalasL 93 
                 ++Dls am ekdl+p+r+ +++++ ++f+ eff+qnPisqlg+ia++d+ a +++ lsGnp +h++a+ +lr+       ++kg+psL+naLe+a+asL
  KKY16227.1  93 IIDLSVAMLEKDLRPTRHLLTLRYTQDFIIEFFEQNPISQLGIIAMHDGLAVRVSPLSGNPTEHLTAIANLRNHaspkylDPKGHPSLENALEMARASL 191
                 69******************************************************************999985333333689**************** PP

                 SSS-TTSEEEEEEEE-SS----SS-HHHHHHHHHHTT-EEEEEEESS--HHHHHHHHHTT.T...TEEEE-SHHHHHHHHHHHHS--------..---- CS
        Ssl1  94 kkvpshasrevliifsslstcDPgdiyetidelkkekirvsvigLsaevavckelaketk.g...tysvvldethlkelllehvsPppaaksk..keas 186
                  + psh++re+l++f++l ++DPgd++ ti +l+++kir +vi+L+a +avc el  +t+ g    ysvvl+e+h++el+++ ++Pp +++s   +++s
  KKY16227.1 192 FHAPSHGTREILLVFGALHSADPGDVHVTIGALVSDKIRARVISLAASLAVCAELVSRTNdGsssGYSVVLNEQHFRELMMDITTPPVTQSSAatTSNS 290
                 ***********************************************************9757889*********************998876557899 PP

                 EEEEE-- CS
        Ssl1 187 likmGfP 193
                 l++mGfP
  KKY16227.1 291 LLMMGFP 297
                 ******9 PP

>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   3.5e-18   3.1e-14       1     105 [.      90     207 ..      90     209 .. 0.93

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 3.5e-18
       VWA_2   1 lvfvlDtSgSmrngdygpt....rleaakdaveallkslpgdrvglvtfsdg.pevlipltkdkakilnalrnleak........gggtnlaaaLqlar 86 
                 l++++D S  m ++d++pt     l + +d+++++++++p +++g++++ dg + +++pl+ +++++l+a+ nl+ +        +g  +l++aL++ar
  KKY16227.1  90 LILIIDLSVAMLEKDLRPTrhllTLRYTQDFIIEFFEQNPISQLGIIAMHDGlAVRVSPLSGNPTEHLTAIANLRNHaspkyldpKGHPSLENALEMAR 188
                 689*************999666678999***********************736778899***************99********************** PP

       VWA_2  87 kalkkrrkgekrvivlitD 105
                 + l + +++ +r+i+l+++
  KKY16227.1 189 ASLFHAPSHGTREILLVFG 207
                 *******9******99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2524.18
//
Query:       KKY16228.1  [L=613]
Description: putative polycomb protein vefs-box [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.3   0.0       0.21   11.3   0.0    1.4  1  Wax2_C    WAX2 C-terminal domain


Domain annotation for each model (and alignments):
>> Wax2_C  WAX2 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.2e-05      0.21     108     151 ..     540     583 ..     537     592 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.2e-05
      Wax2_C 108 lenlhsCEnwlpRrvmsAwrvagivhalegweehevGddvedid 151
                 +e l+ C ++++ rvm+    agiv++le+ ++h   d+  +i 
  KKY16228.1 540 VEILKLCSEMFEDRVMNEEVFAGIVQMLEERKKHSTSDSSPQIT 583
                 667899****************************9988766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 3671.03
//
Query:       KKY16240.1  [L=384]
Description: putative protein kinase domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-32  113.1   0.0    1.7e-31  109.6   0.0    2.0  1  Pkinase         Protein kinase domain
    2.3e-08   33.6   0.4    5.5e-07   29.1   0.4    2.2  1  Pkinase_Tyr     Protein tyrosine kinase
  ------ inclusion threshold ------
       0.09   11.5   0.2       0.15   10.8   0.2    1.3  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   0.0   2.8e-35   1.7e-31       1     264 []      32     378 ..      32     378 .. 0.88

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 2.8e-35
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS......CTTB--EEEEEEE.........SSEEEEEEE--TTEB CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk......hpnivrlyevfee.........kdelylvleyvegge 84 
                 y+++ klG Gs +++  +++ +t+k  A+K+ +++   ++   ++ +Ei+i k+l+      hp  + +  + ++         + + +lv e+++++ 
  KKY16240.1  32 YKVVAKLGFGSASTIWCCRNLATNKYAALKIYAHDLVAED---EIDNEISIYKHLNnagnpdHPGKMYVRTI-QDsffvtsragNPHQCLVHEVLSNDI 126
                 78899****************************9998884...489*********98766655533222222.2246668999999************9 PP

                 HHHHHH.HHSS--HHHHHHHHHHHHHHHHHHHHTT.EE-SS-SGGGEEEET.......................................TTEEEE-SG CS
     Pkinase  85 ladlle.rkgslseeeakkiakqilegleylHskg.iiHrDlKpeNiLide.......................................kgelKitDF 142
                 l  +++  +++l+e+ +k+i+ ++l +l++lHs++ iiH D+K eNiL+                                          g   ++DF
  KKY16240.1 127 LSLRYTrPDRKLPEAMLKQILIHLLLALDFLHSEChIIHTDIKEENILLGLvdssiveqldtkeiaasslyksvngynlyksanfgiptrFGRPILCDF 225
                 98777757788*********************7766************9855789*****************99999999877777765444599**** PP

                 TTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS........ CS
     Pkinase 143 GlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei........ 233
                  la++ + ++   + +    Y+APEv+ e + + +vD+W +Gv+++ ++ ++ +f g + ++ ++ +  +l +i+ +lg+  +++ ++se+        
  KKY16240.1 226 SLARNGQVEH--CHDIQPDPYRAPEVILEMPWGYAVDIWNVGVMVWDMFENRRMFDGLDPETGKYGNRFHLASIVGLLGPPPLEFLQRSECssvyfddr 322
                 ****998876..77788889************************************999999889999999999999997777777777778889**** PP

                 .........................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 .........................seeakdllkkllkkdpkkRltaeellqhpyl 264
                                          ++ ++d+++k+++++p++R + +ell++p+l
  KKY16240.1 323 gdwkclnpilsvswensernlevsnKKGFLDFVRKMVRWTPESRASPSELLEDPWL 378
                 ************************9999***************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.4   9.2e-11   5.5e-07      74     201 ..     113     274 ..      34     285 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 9.2e-11
                  SSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHT.TEEEST-SGGGEEEEE................................ CS
  Pkinase_Tyr  74 epllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLesk.klvHrdlaarNvLlse................................ 138
                   + ++v e +++  L+   ++  ++kl    l ++ +++  ++++L+s+ +++H d+   N+Ll                                  
   KKY16240.1 113 PHQCLVHEVLSNDILSLRYTRP-DRKLPEAMLKQILIHLLLALDFLHSEcHIIHTDIKEENILLGLvdssiveqldtkeiaasslyksvngynlyksa 209
                  4478999999998888888887.99*********************986479***********9988899**************************** PP

                  .......TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTT CS
  Pkinase_Tyr 139 .......nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftl 201
                              ++Df Lar+      +v++ +   p  + apE++ e+    + D+W  Gv++w +f++
   KKY16240.1 210 nfgiptrFGRPILCDFSLARNG-----QVEHCHDIQPDPYRAPEVILEMPWGYAVDIWNVGVMVWDMFEN 274
                  ***9987567789*******99.....7788889999******************************984 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   2.6e-05      0.15     311     341 ..     146     176 ..     133     205 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.6e-05
  Pkinase_fungal 311 alrDaIkghrsLflkagiLHrDiSenNilit 341
                      l++ + ++  L++++ i+H Di e+Nil+ 
      KKY16240.1 146 ILIHLLLALDFLHSECHIIHTDIKEENILLG 176
                     56777889999******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 2484.88
//
Query:       KKY16241.1  [L=465]
Description: putative feruloyl esterase b [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-92  310.4   0.5    3.1e-92  310.0   0.5    1.1  1  Tannase       Tannase and feruloyl esterase
    0.00036   19.9   0.0      0.094   12.0   0.0    2.2  2  Hydrolase_4   Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.069   12.6   0.1       0.61    9.5   0.1    2.1  2  Peptidase_S9  Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Tannase  Tannase and feruloyl esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.0   0.5   5.1e-96   3.1e-92      34     468 ..      15     440 ..       8     441 .. 0.92

  Alignments for each domain:
  == domain 1  score: 310.0 bits;  conditional E-value: 5.1e-96
     Tannase  34 vGgggfagniqtttskaevlskalarGfatagtdaGhdasdadasfaknpealldfayralkkvtdvakaLvkafygkspersYfeGcSdGGRegltaa 132
                  G+gg++g++++++     l      Gfa +g ++Ghd+ + d s  ++++ ++dfayr+ ++++  +k++v+++yg+  + sY+ GcS+GGR+g+  a
  KKY16241.1  15 SGNGGLNGCVDYKN-----LVYTTSLGFASTGDNGGHDGPSIDGSAFLDNDNIIDFAYRSRHTTVLSGKQVVEQYYGRPHKTSYYYGCSTGGRQGMKSA 108
                 7*************.....8888999**************88888779999************************************************ PP

     Tannase 133 qRypddydGiiagapalnfvqlalygafsaraeatdd.ldaiisaaelkviakavlaaCDalDgvaDglvqdpelCklafevesllCeagtgsngd... 227
                 q +p+d+dGi+ag+pa  f +l  ++a     + t+  ++ ++s  +l ++ +++ ++CD++D vaDg+++d   C++++e  +llC+ g  +++    
  KKY16241.1 109 QMFPEDFDGIVAGSPATDFNHLGAWTAHFLTLTGTNAsDPRFLSDTQLTAVTNEIYRQCDTIDRVADGIIEDSSICNFNPE--TLLCNRGPIAQSPmfn 205
                 **************************999999988765789****************************************..****999877665666 PP

     Tannase 228 .scltaaqvavvaaiyeglknvlssGerlylglevaseetdaagelasstakwelgstvkaesaaeealrnvvakfardlnldlsslklealkerktts 325
                   cl++ qv++v++i+  l+    + + +y++l   +++ d   +l+++t           ++   e++r+ +     d  +d +++ +  l+ +  +s
  KKY16241.1 206 gTCLSNTQVQTVRNIFLPLYG--LNETFVYPRLSPGADLFDSS-VLQGQT-----------TTLGGEYYRYAIL---SDPSWDPTTFSA--LDIKVADS 285
                 69**************99977..66678888888655444332.223333...........3345699***999...9********999..7777789* PP

     Tannase 326 lvelsslidatepdlskfrsrgGklilyhgtaDpvvspadsikyyesveaklgadleeleeFarlylvpGvaHcgggsgtsai...........dlLea 413
                 l + +  i +++ dl  f+srgGk+++yhg aDp++s ++s++yy++v++ +    +++++F+rl+ ++G+aHc gg+g+ a+           ++L  
  KKY16241.1 286 LDPAHGFISSFSGDLYSFKSRGGKILTYHGGADPIISGEQSMRYYQHVAKTMSFSNADMDSFYRLFPISGMAHCEGGQGAWAFgqrstaanstdNILMD 384
                 ****************************************************9999************************999**********999*** PP

     Tannase 414 lvdWVEngkaPerlvatkakkek..ksagrtrplcryPkiakykgkgsvekassftc 468
                 lv W E g aPer+v++k  +++    ++  r +cryP++  y g g+ ++++s+ c
  KKY16241.1 385 LVRWTEGGAAPERIVGEKWVNDSsiLGVKFKRAHCRYPYRTTYVG-GDPDDVDSWDC 440
                 ******************9999954559999**************.*********99 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   1.6e-05     0.094      73     136 ..      87     147 ..      73     171 .. 0.76
   2 !    5.6   0.0    0.0014       8.4     194     219 ..     310     335 ..     303     347 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.6e-05
  Hydrolase_4  73 hpelplfllGhSmGGliallyllrypdkvaglilsaPalkikaklkappllklllkllgkllpk 136
                   p++  + +G S+GG   ++ +++ p++++g++  +Pa + ++   + ++ + +l+l+g+ + +
   KKY16241.1  87 RPHKTSYYYGCSTGGRQGMKSAQMFPEDFDGIVAGSPATDFNH---LGAWTAHFLTLTGTNASD 147
                  34557799*******************************9996...456666666666665555 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0014
  Hydrolase_4 194 llllhGeaDkvvdpeasrelyerlgs 219
                  +l +hG+aD++++ e+s ++y+++++
   KKY16241.1 310 ILTYHGGADPIISGEQSMRYYQHVAK 335
                  7999*****************99986 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1    0.0001      0.61      55     110 ..      80     136 ..      74     161 .. 0.80
   2 ?    0.5   0.0      0.06   3.6e+02     142     171 ..     306     335 ..     249     354 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0001
                   HHHTTS--GGGE.EEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTS CS
  Peptidase_S9  55 lakegyvdserl.aitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdl 110
                   +++++y  + +  + +G S GG   +  + + p+ F+++va+ p +d  +    t +
    KKY16241.1  80 VVEQYYGRPHKTsYYYGCSTGGRQGMKSAQMFPEDFDGIVAGSPATDFNHLGAWTAH 136
                   5666666665542679*******************************9887777655 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.06
                   ---EEEEEEETT-SSS-THHHHHHHHHHH- CS
  Peptidase_S9 142 aypplLlihGlaDdrvppaealklvaaLqk 171
                   +  ++L  hG aD  +  ++++++++ + k
    KKY16241.1 306 RGGKILTYHGGADPIISGEQSMRYYQHVAK 335
                   667899999999999999999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.53
# Mc/sec: 2635.38
//
Query:       KKY16242.1  [L=714]
Description: putative cell wall [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 4731.79
//
Query:       KKY16243.1  [L=541]
Description: putative onanonoxo-7-onima-8-eninoihtemlysoneda [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-22   79.3   0.0    4.7e-22   78.8   0.0    1.2  1  AAA_26       AAA domain
      1e-21   77.1   0.0    5.2e-20   71.5   0.0    2.3  1  Aminotran_3  Aminotransferase class-III


Domain annotation for each model (and alignments):
>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   5.3e-26   4.7e-22       5     186 ..      17     207 ..      13     220 .. 0.83

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 5.3e-26
      AAA_26   5 vtgtdtgvGKTvvslgLvralkr..kgvkvgyfKPiqtgieededselikellgldqtyelpeplalsaplspelaarqeg..edid.lekiv....ke 94 
                 + g  t+vGKTvvs+ L++a+++  +  kvg++KP++tg  ++ d+++i++++     +   + +++++p+sp++aa+q++  ++ + l++i       
  KKY16243.1  17 IYGANTNVGKTVVSTVLCKAIDQqaTSKKVGFLKPVSTGPLDEADDKHIERFV---PGILNSCLYRFDEPVSPHIAAAQKTipRAAEiLSSIHgtlsTW 112
                 78999****************99555668**********************98...56666778*************9997334554344444997433 PP

      AAA_26  95 lekdadivvVEGagglgvpiteellnadiaknlgapvilVargglgtinqllltiealrqknvrvlGvilNkvrnp...envetlekksgipvlG 186
                  +k   + ++E agg+ +p  +++++ad+ + l++pvilVa ++lg i  ++ + e+l  ++  v Gv l +       e ++ +++k+gi +l+
  KKY16243.1 113 SNKGLSHAFIETAGGVHSPGPNGNSQADLYRPLRLPVILVADSRLGGISSTVSAFESLLIRGYDVNGVLLFRDGYYknhEYLKDFFQKHGIALLA 207
                 5566799***************************************************************9954442224555555555566655 PP

>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0   5.8e-24   5.2e-20      30     209 ..     319     540 ..     316     541 .] 0.84

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 5.8e-24
                  EESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-...SEEEEESSHHHHHHHHHHHHHHHHHHTS..HCTT-..EE CS
  Aminotran_3  30 lDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapk.gldkvflansGseAvetAlKlarkyarekk..atekt..ki 122
                   D  +s++   lGh +P+++  ++ +a    hv+f+   +epal+lae l+k  ++  l+kvf+ ++Gs  +e+A+K+  + ++++     +++   i
   KKY16243.1 319 FDGSASWWTQGLGHGNPDLSLTAAYAAGRYGHVMFASAIHEPALNLAELLVKNSGNpRLSKVFYTDNGSTGMEVAIKMGLRASCSRYgwDAQREeiGI 416
                  68999*********************************************8887763599*********************99999888666664479 PP

                  EEETTT---SSHHHHHHSS--TTTTTTCTTB........-TSEEEE-TTBGGGTB-HH.............................HHHHHHHHHHH CS
  Aminotran_3 123 iafkgafHGrtlgalsvtgskkkyktlfgpf........lpevvrlkypdeevlkene.............................eeeaalleele 183
                  i +kg++HG+t g +  +++ +  +++++           p+v+ ++    + ++e+                              + ++ l+  ++
   KKY16243.1 417 IGLKGSYHGDTIGVMDCSEP-STFNSKVEWYrgrghwfdFPQVKMVNGTWRVEIPEQLqselgddlefesldsvfdldrrkhsetgkRYDEYLKSSIS 513
                  ***************99998.777776666655666677566666665555555544466777899**************999666555666677777 PP

                  HHHCHTCCCEEEEEE-S.CETTTTSEB CS
  Aminotran_3 184 alekkkkdevaAvivEp.iqgegGvvv 209
                  +l +++  ++ Avi+Ep i g+gG+ +
   KKY16243.1 514 DLVHRQGRKIGAVILEPvILGAGGMLF 540
                  777*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3485.91
//
Query:       KKY16244.1  [L=546]
Description: putative lactose permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-76  257.4  27.3    2.8e-76  257.2  27.3    1.0  1  Sugar_tr  Sugar (and other) transporter
    4.1e-33  114.8  24.0    3.6e-21   75.5  11.4    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.2  27.3   3.2e-80   2.8e-76       1     452 []      56     511 ..      56     511 .. 0.90

  Alignments for each domain:
  == domain 1  score: 257.2 bits;  conditional E-value: 3.2e-80
                 HHHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   1 valvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 ++++  ++++++gYd  ++++ l++  f+ +++ ++s        ++ g++++++ +G+++   f+g++ d++GR++++ i+++ +v+g+++++a+  +
  KKY16244.1  56 CCILGFFCSTMNGYDGSLLNSLLESKTFLQKYHGENSG-------IWAGIVTNMYTIGGVVALPFIGPALDTWGRRWGMFIGCFAVVVGTIIMGASSYN 147
                 5888899********************77777777666.......688*************************************************99 PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPryl 198
                  sv +++ gR+++G gv +a++  P+y+ E++++++R++++++y++++ +G +++a+++ g+++ ++++ w + l++ql+++ l++++ lflPESPr+l
  KKY16244.1 148 YSVGQFMGGRFFAGWGVAVACAAGPIYVVEVSHPAYRSIVGGFYNTFWFTGSILSAGVTRGTENLGGNKSWTVSLWFQLFFPALVCLFCLFLPESPRWL 246
                 **************************************************************666666******************************* PP

                 HHTT-HHHHHHHHHHHHHC.HHHHHHHHHHHHHHHHHHH..........HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH.. CS
    Sugar_tr 199 vekgkeeeakevlaklrge.edadrelaeekdsleaeqeee.....kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks.. 289
                 +  g+ ++ak+vl k  g  + ++  +    +++e++ e +       +++ l+++++   rl+  +++q++ q  G+    +  +  fe++g++++  
  KKY16244.1 247 YVSGQLDKAKAVLTKFHGYgNSDSVWVSMQLSEYEEYLELNgsdkrWWDYRALFKTRSSVNRLFCNCAIQAMGQEAGNGQYSIGLSAAFETAGFTDTns 345
                 ***************766655555566666666666655555553566778999999999*****************88888888999*********97 PP

                 .HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS.....CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTT CS
    Sugar_tr 290 .llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg..ivalllvaks..kaasivaivfialfialfalgwgpvpwvlvsElfpqsv 383
                     t++  + +f++ +v++ lvd++GRR+ll+++ + ++i  + ++      + ++++   aa++  ++f ++f a+f++g++p+ +++  E+   ++
  KKY16244.1 346 qHNLTLGNACQQFFFAMVGASLVDKVGRRPLLIFSNLACSITWAAMCiaA-SVFASSGEknVAAGNTTLAFQFIFGAVFSIGFTPLQALYPVEVLNFEI 443
                 7778888889*************************888888888888421.2222222245899*********************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 384 Rskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 R+ka+a+   +++++ ++ +++ p+ ++aig + ++++f   + + +i+++ff+petk rtlee++++f
  KKY16244.1 444 RAKAMAFGNLIMNIVMIFNNYVWPVCLKAIG-WHSYIIFCLWCSIQAIIIYFFIPETKQRTLEELDKIF 511
                 *******************************.*********************************9987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5  11.4     4e-25   3.6e-21       2     187 ..      61     252 ..      60     303 .. 0.83
   2 !   45.4   4.7   5.5e-16   4.9e-12      36     185 ..     348     507 ..     304     530 .. 0.71

  Alignments for each domain:
  == domain 1  score: 75.5 bits;  conditional E-value: 4e-25
       MFS_1   2 llaaflsalarsilgpalpl.alaedlgispse..igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa...sslwlllvlrvl 94 
                 +++  +++++ s+l+++l + +  + ++   s   +g+++ +y++g +va +++G+  d +Grr+ +++g ++ ++g++++  +    s+  ++ +r++
  KKY16244.1  61 FFCSTMNGYDGSLLNSLLESkTFLQKYHGENSGiwAGIVTNMYTIGGVVALPFIGPALDTWGRRWGMFIGCFAVVVGTIIMGASsynYSVGQFMGGRFF 159
                 8999*****************999999944444668889999***********************999999999999344443344344447******* PP

       MFS_1  95 qGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrkspkee 187
                 +G+g +++ +ag +++++++++  r+ + g++++++  G+il +++      ++g   W+++ ++  ++ +l+++   + l+ ++++r+   + ++
  KKY16244.1 160 AGWGVAVACAAGPIYVVEVSHPAYRSIVGGFYNTFWFTGSILSAGVTRGTENLGGnksWTVSLWFQLFFPALVCL---FCLFLPESPRWLYVSGQL 252
                 **********************************************997764444888***************99...555555555555444444 PP

  == domain 2  score: 45.4 bits;  conditional E-value: 5.5e-16
       MFS_1  36 llltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllll....fa........sslwlllvlrvlqGlgagalfpagaa.liadwfpkeerg 120
                  l+ + a  ++++++++++l+d++Grr++l+++ l+ +++ +++++    fa        ++ +  l++ ++ G+  +++f+  +a + +++ + e r+
  KKY16244.1 348 NLTLGNACQQFFFAMVGASLVDKVGRRPLLIFSNLACSITwAAMCIaasvFAssgeknvaAGNT-TLAFQFIFGAVFSIGFTPLQAlYPVEVLNFEIRA 445
                 36666777899*****************************555555433332444433333333.666676666666666666666156899999**** PP

       MFS_1 121 raigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspk 185
                 +a+++ ++ +++ +i+   + ++++ ++gW++ ++i+++ + + +++  ++++ ++++ ++ ++ 
  KKY16244.1 446 KAMAFGNLIMNIVMIFNNYVWPVCLKAIGWHS-YIIFCLWCSIQAII--IYFFIPETKQRTLEEL 507
                 ******************************96.55555566555565..5666666655555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 3659.55
//
Query:       KKY16245.1  [L=317]
Description: putative nucleoside-diphosphate-sugar epimerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-21   75.4   0.0    5.9e-21   75.0   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.5e-15   57.5   0.0    2.7e-15   56.6   0.0    1.4  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    1.2e-12   47.5   0.0    1.4e-12   47.2   0.0    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
      4e-07   29.4   0.0    8.6e-07   28.3   0.0    1.5  1  RmlD_sub_bind    RmlD substrate binding domain
    1.5e-06   27.6   0.0       0.06   12.5   0.0    2.8  2  NAD_binding_4    Male sterility protein
    4.2e-06   26.8   0.0    6.9e-06   26.1   0.0    1.3  1  NAD_binding_10   NAD(P)H-binding
     0.0011   18.5   0.0     0.0079   15.7   0.0    2.0  2  adh_short        short chain dehydrogenase
     0.0043   17.0   0.0      0.035   14.0   0.0    2.1  1  KR               KR domain
  ------ inclusion threshold ------
      0.034   13.3   0.0       0.18   10.9   0.0    1.9  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
       0.11   12.6   0.0       0.18   11.9   0.0    1.5  1  Ldh_1_N          lactate/malate dehydrogenase, NAD binding do


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0   3.3e-24   5.9e-21       1     202 [.       3     202 ..       3     225 .. 0.83

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 3.3e-24
                 EEEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHC..EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg.yevigldrlssasntarledl..elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtl 96 
                 il+tGa+GfiG+ ++++ll+   ++++  d    + +t+++     +  ++dl++++a     + +++ +v+h    +g +a+++     +  n+  t+
  KKY16245.1   3 ILITGASGFIGQLVARELLKDSsHTLVLTDIVAPTVPTKSKYPQnaKCLQADLCKDAAKIVEAEPFDAAYVFHGIMSSGSEANFDLG---MTVNVDATR 98 
                 8******************999777777776666666665555567********988555555555666666665577778877774...559****** PP

                 HHHHHHH..HHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTT.S-TTSTTSHHHHHHHH CS
   Epimerase  97 nlleaar..kagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGpr.ngegevsrvipalirk 192
                  lle  r  ++gv r++++sS +vYG++ +   +et+     +p s Y+a Kl  e l+ +y++ + ++  +lr  ++     ++++  s++++ +ir 
  KKY16245.1  99 ALLETFRtlRQGV-RIIYASSQAVYGRPFPEVVDETV---RPYPESSYGAEKLICETLINDYTRRGFIDGFCLRFPTITVRPgRPTQAASSFLSGMIRE 193
                 *******555588.************99984355555...889*******************************99887666599999*********** PP

                 HHTTSSSEEE CS
   Epimerase 193 ilegkqevtl 202
                  l+g+ ++++
  KKY16245.1 194 PLNGQ-PCVI 202
                 99999.7765 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   1.5e-18   2.7e-15       1     169 [.       4     158 ..       4     168 .. 0.83

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 1.5e-18
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    LiTG +GfiG+ +a+ Ll+   +  ++++  +   t   ++       ++ +n k  ++Dl+  +   ++++   +d+ y + +    +   +  +
     KKY16245.1   4 LITGASGFIGQLVARELLKDSSHTLVLTDIVAP--TVPTKS-------KYPQNAKCLQADLCKDA--AKIVEAEPFDAAYVFHGIMSSGSEAN-FD 87 
                    9******************97766555433332..222222.......2346889*******855..89*********999999866554444.47 PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHH CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyre 169
                      + vnv +t  LLe  r+l   + vr++ aS+  vYG++    ++Et + yP+s Y+a Kl++++++ +y +
     KKY16245.1  88 LGMTVNVDATRALLETFRTLR--QGVRIIYASSQAVYGRPFPEVVDETVRPYPESSYGAEKLICETLINDYTR 158
                    8999***************75..79****************99****************************86 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0     8e-16   1.4e-12       1     178 [.       4     176 ..       4     228 .. 0.83

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 8e-16
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtd.kdkleealegvdvvihlaslvdvagkltedeimkvnvkGTrn 98 
                 ++tG++GF+G+ + +eL++  + +++   D++  +    +++  +++k++++D+++ ++k+ ea e  d+  + ++++ + ++ ++d  m+vnv  Tr 
  KKY16245.1   4 LITGASGFIGQLVARELLKDSS-HTLVLTDIVAPTVP-TKSKYPQNAKCLQADLCKdAAKIVEA-EPFDAAYVFHGIMSSGSEANFDLGMTVNVDATRA 99 
                 69****************9996.9999***9987766.6667777777*****98615677777.77888888899*********************** PP

   3Beta_HSD  99 vlea..cvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlkngg..rlyTcaLRp 178
                 +le+   +++gvr ++Y Ss  v g      e++  dE+  + + +++ y   K + E l+     r + +g   r+ T+ +Rp
  KKY16245.1 100 LLETfrTLRQGVR-IIYASSQAVYGR--PFPEVV--DET--VRPYPESSYGAEKLICETLINDYTRRGFIDGFclRFPTITVRP 176
                 ***8334568887.79****999988..445555..554..456789999999*****99999999888888778888999988 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   4.8e-10   8.6e-07       1     142 [.       1     159 [.       1     169 [. 0.81

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 4.8e-10
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltre................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnae 80 
                    m+il+tGa+G +G+ +a++l ++  ++l lt                   l+ +  + +a+++++   d+ +           E + ++ + vn++
     KKY16245.1   1 MHILITGASGFIGQLVARELLKDSSHTLVLTDIvaptvptkskypqnakCLQADLCKDAAKIVEAEPFDAAYVFHG-IMSSGSEANFDLGMTVNVD 95 
                    89*****************999988888886667888989988888777444444455566666655553332222.2346789999********* PP

                    HHHHHHHH..HHHCT-EEEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHHH-SS CS
  RmlD_sub_bind  81 avealAea..aaavgalLihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavlaagkk 142
                    a++al e   + + g+ +i+ S+  V+    ++   e+ ++ P + YG+ Kl  E  ++++  +
     KKY16245.1  96 ATRALLETfrTLRQGVRIIYASSQAVYGRPFPEVVDETVRPYPESSYGAEKLICETLINDYTRR 159
                    *****996336789*************99999*9***********************9988766 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   3.3e-05      0.06       1      23 [.       5      27 ..       5      62 .. 0.88
   2 !   11.7   0.0     6e-05      0.11     102     210 ..      84     176 ..      40     199 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.3e-05
                   EE-TTSHHHHHHHHHHHHHS-.T CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpev 23
                   +TGa+GF+G+ + ++LL+++++ 
     KKY16245.1  5 ITGASGFIGQLVARELLKDSSHT 27
                   8****************998863 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 6e-05
                    TTSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHHHHHHHHHH--- CS
  NAD_binding_4 102 epykellrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEklvrearrrsglp 197
                    ++ +  + vNv++tr +le  ++l++   +++ S+ +v+g    ev             +de+        +  Y   K + E l++++ rr+ + 
     KKY16245.1  84 ANFDLGMTVNVDATRALLETFRTLRQGVRIIYASSQAVYGRPFPEV-------------VDETV---RPYPESSYGAEKLICETLINDYTRRGFID 163
                    55566789***************************77777777555.............22222...23345589999999999999999888888 PP

                    EEEEEE-EEE--S CS
  NAD_binding_4 198 vvivRpsiitges 210
                       +R ++it ++
     KKY16245.1 164 GFCLRFPTITVRP 176
                    8888888888844 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   3.8e-09   6.9e-06       1     134 [.       7     151 ..       7     158 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 3.8e-09
                     TTTSHHHHHHHHHHHHC-T-EEEEE.ETTHHHCHHHHCTTTCEEEE--TT.-CCHHHHHHT.T-SEEEES---TCC......HHHH......HHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtal.vRnpeklaeleaeeglevvegdvt.dvedlaealk.gadaVvsalggggk......deeg......akn 80 
                     GA+G +G+l+++ell+++ h++++  +  p   ++ +  ++++ +++d+  d++++ ea   +a  V+  + ++g+         +      +++
      KKY16245.1   7 GASGFIGQLVARELLKDSSHTLVLTdIVAPTVPTKSKYPQNAKCLQADLCkDAAKIVEAEPfDAAYVFHGIMSSGSeanfdlG--MtvnvdaTRA 99 
                     9****************97776664322333333344569*********8245666655432444577777655553445550..1555566*** PP

                     HHHHHHH..CT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHS CS
  NAD_binding_10  81 ivdaake..agvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellras 134
                     +++  ++  +gv R+++ s+  v+    ++f+e+++e++++y +  + ae+l+ ++
      KKY16245.1 100 LLETFRTlrQGV-RIIYASSQAVYG---RPFPEVVDETVRPYPESSYGAEKLICET 151
                     ***988643777.**********95...89***************99999998665 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.4e-06    0.0079       2      61 ..       2      58 ..       1      66 [. 0.85
   2 ?    0.3   0.0      0.23   4.2e+02     104     138 ..      85     120 ..      70     129 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.4e-06
                EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSH CS
   adh_short  2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdr 61
                ++l+tGas+ IG+ +a+el+k+  +++v+    ++   ++++  ++   a ++q+D+ + 
  KKY16245.1  2 HILITGASGFIGQLVARELLKDSSHTLVLTDIVAPTVPTKSKYPQN---AKCLQADLCKD 58
                69**************************888888888888888876...99999998743 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.23
                 HHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGG CS
   adh_short 104 vievNltgvflltravlpaml.kqssGrIvnvsSva 138
                  +++ +t  + +tra+l+++   +++ rI+  sS+a
  KKY16245.1  85 NFDLGMTVNVDATRALLETFRtLRQGVRIIYASSQA 120
                 344445555666777777777335555788888876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.9e-05     0.035       4      37 ..       4      37 ..       2     126 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.9e-05
                EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..- CS
          KR  4 litGGlGgLGlelarwlaekgarhlvllsRsaaa 37
                litG+ G +G+ +ar l+++  ++lvl+   a++
  KKY16245.1  4 LITGASGFIGQLVARELLKDSSHTLVLTDIVAPT 37
                9*************************98666543 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0001      0.18       1      31 [.       3      33 ..       3      76 .. 0.89
   2 ?   -0.2   0.0      0.24   4.3e+02     133     155 ..     137     159 ..     130     178 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0001
                     EEEETTTSHHHHHHHHHHHHHB-SEEEEEES CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilkkkpkkiiller 31
                     +l+tGa+G iG+ + r++lk + ++++l + 
       KKY16245.1  3 ILITGASGFIGQLVARELLKDSSHTLVLTDI 33
                     89************************99875 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.24
                      S--SHHHHHHHHHHHHHHHGGG- CS
  Polysacc_synt_2 133 nPtnvmGatKrlaekllqalake 155
                      +P + +Ga K+++e l+  + ++
       KKY16245.1 137 YPESSYGAEKLICETLINDYTRR 159
                      46799**********99888765 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0    0.0001      0.18       2      37 ..       2      36 ..       1      73 [. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0001
                EEEEETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHH CS
     Ldh_1_N  2 kvavvGaaGgiGqslalllankkladelaLlDiake 37
                 + ++Ga+G+iGq +a  l++      l+L Di+  
  KKY16245.1  2 HILITGASGFIGQLVARELLKDSSHT-LVLTDIVAP 36
                699***************99887776.*****9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 1914.28
//
Query:       KKY16246.1  [L=288]
Description: putative fructose-bisphosphate aldolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-80  270.0   0.0    2.7e-80  269.9   0.0    1.0  1  F_bP_aldolase  Fructose-bisphosphate aldolase class-II
  ------ inclusion threshold ------
       0.13   11.4   0.0        0.2   10.8   0.0    1.3  1  HpcH_HpaI      HpcH/HpaI aldolase/citrate lyase family


Domain annotation for each model (and alignments):
>> F_bP_aldolase  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.9   0.0     3e-84   2.7e-80       3     280 .]      11     287 ..       9     287 .. 0.92

  Alignments for each domain:
  == domain 1  score: 269.9 bits;  conditional E-value: 3e-84
                    HHHHHHHHHHHT--EEEEE--SHHHHHHHHHHHHHHTS-EEEEE-HHHHHHHH-HHHHHHHHHHHHHHHHT...-EEEEEE----GHHHHHHHHHH CS
  F_bP_aldolase   3 lkellkkAkeegyavgafnvtnletvkavleaaeeaksPvIlqlsegaaakyaggaealaelvraaaeaykkasvpvalhlDHgakleglkkaiea 98 
                      +++++A+e+gy+v+ +  +nlet+ av++aae+++sP+ + l+++a+++++g       lv+ aa+a+++asvp+ lhlDH+++ e ++ka ++
     KKY16246.1  11 SYQIIQAAEEGGYGVPGVVSYNLETIVAVVRAAEKKRSPAQILLFPWALTYADG------LLVNLAADACRSASVPISLHLDHAQDAESIRKAADM 100
                    679**********************************************77755......5666667777799*********************** PP

                    S-SEEEE--TTS-HHHHHHHHHHHHHHHHHTT-EEEEE-----------TT-TT...TS--HHHHHHHHHHHH-EEEE--SS---SS--SS....- CS
  F_bP_aldolase  99 gfsSvMiDgSelpleeNialtkevverahalgvsvEaElGriggeedgvvaeek...lyTdpeeaeefveetgvdalAvaiGnvHGvykpkpk..L 189
                     f+S+M+D+S++++eeN+++t+e+v+++ha g + EaE Gri+g+edgv ++ +   l+T+peeaeef+ etg+d+lA+a+GnvHG y  +++  L
     KKY16246.1 101 PFDSIMVDMSHYEKEENLSKTRELVKYCHAKGKTTEAEPGRINGGEDGVMDTGDlegLLTTPEEAEEFI-ETGIDFLAPAFGNVHGFYGGPQNvhL 195
                    *************************************************76666778************.******************8774467* PP

                    -THHHHHHHHHH...--SEE-SGTTS-HHHHHHHHHTTEEEEEE-HHHHHHHHHHHHHGGE-HHH-HHHHHHHHHHHHHHHHHHHHHHTT-SS- CS
  F_bP_aldolase 190 dferlkeiqkav...vplVlHGgsgvpdeeirkaiklGvvKiNidtdlrlaytkavkkekenkkydprkllkeaeeamkevvkekiellgsagk 280
                    d+erl+++++a    v+lVlHG+++ + e +++++k G+++ N++  +  +y k +k+++++  +    l++++++ m e+++  +++lgs+gk
     KKY16246.1 196 DLERLENVKRAShgkVNLVLHGTNEWNAEHFQECVKGGMTRCNVNDVILCNYNKYIKENAGK--VPLTTLMEKGTDLMVERLEWLMDVLGSTGK 287
                    ***************9****************************************777533..355556777******************997 PP

>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.2e-05       0.2       9      73 ..      89     149 ..      82     168 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.2e-05
                 TSHHHHHHHCTC--SEEEEESSTSSSHHHHHHHHHHHHHHHHHHHHCTTTSSEEEEE-SSTTHHH CS
   HpcH_HpaI   9 anaalaekaaiagaDsvliDlEdavalaeKdaARvlvsealkqldalaaaasevvVRvnsldsel 73 
                 ++a++++kaa + +Ds+++D+ +      K++   + +e++k   a  +++ +   R+n+ ++++
  KKY16246.1  89 QDAESIRKAADMPFDSIMVDMSHYE----KEENLSKTRELVKYCHAKGKTTEAEPGRINGGEDGV 149
                 68899******************88....444444444444444444444434444666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.56
# Mc/sec: 1538.65
//
Query:       KKY16247.1  [L=519]
Description: putative vacuolar aspartyl aminopeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.8e-138  460.3   0.0   6.8e-138  460.1   0.0    1.0  1  Peptidase_M18  Aminopeptidase I zinc metalloprotease (M18)
  ------ inclusion threshold ------
      0.027   13.5   0.0        1.3    7.9   0.0    2.5  2  Peptidase_M42  M42 glutamyl aminopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M18  Aminopeptidase I zinc metalloprotease (M18)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  460.1   0.0  7.6e-142  6.8e-138       1     432 []      65     507 ..      65     507 .. 0.94

  Alignments for each domain:
  == domain 1  score: 460.1 bits;  conditional E-value: 7.6e-142
                    HHHH--SHHHHHHHHHHHHHCTT-EESTTTS-ST..STTCEEEEEEETTTEEEEEEEETTS-GGG--EEEEEE---SEEEEECCEEEE.ETTEEEE CS
  Peptidase_M18   1 finksptpyhvvaevaekllkagfkelsekekwk..iepggkyfvtrngssliAFavgkkykaengfsiigaHtDsptlrvKpkskkk.aegylqv 93 
                    f+ ++pt +h+va++a++l  agf+ lse++ w   i+pggky+vtrngs+ iAF+vgk+y+++ng+ i+++H+D++t ++Kp +k   ++gy q 
     KKY16247.1  65 FMTSNPTVFHAVAHFAKQLSGAGFEALSERDLWTekIQPGGKYYVTRNGSAFIAFSVGKDYQPGNGVGIVAGHIDALTAKLKPVPKLPtKAGYVQL 160
                    7899*****************************999**************************************************97699***** PP

                    EEEEESS.SSGGGTT--EEEEEEEEECTT--EEEEEECCSTT---BBB----GGG-GG..GSS--TTTTTSEEEEEEEE.....------TTCCC. CS
  Peptidase_M18  94 gvetYGggiwetWldrdLsvaGrvlvkkkkeekleaklvnierPvlriPnlaiHLdrdineefkfneetelepilglae.....eeeeekedkek. 183
                    gv++Y g+  +tW drdL+++Grvlvk++ ++k+e klv+++ P+ r+P+la+H+     ++  fn+et+++pi+gl +       +   e+++k 
     KKY16247.1 161 GVAPYAGALNSTWWDRDLGIGGRVLVKDS-KGKIETKLVKLDWPIARVPTLAPHFGAA--AQGPFNMETQVVPIIGLDNsdvlgT-SSVSEESTKi 252
                    *******999******************8.69************************99..599**************99665431.2222222335 PP

                    .....T.CCHHHHHHHHHHHHT.S-CCCCCCCEEEEEE-S--EEETTTT-EEEESSHHHHHHHHHHHHHHCCCCHT-TTTS-SEEEEEEESSCCGT CS
  Peptidase_M18 184 .....knkhkkalleliaeelg.vevedivdlelilvdaqkakivGiekeflfaprlDnkvscfaaleallesaedsleeedkvrivalfDnEEvG 273
                              + l++ ia e+g  + ++iv+ el+l+d+q+a+++G++kef+fa r+D+k++c+aa+eall+s+++  + +d +++  +fD+EE+G
     KKY16247.1 253 pagtfAATQPERLVKAIAGEMGiSDYSSIVNWELELFDTQPAQLGGLDKEFIFAGRIDDKLCCYAAVEALLASSDS--TSSDIIKMTCCFDDEEIG 346
                    666554678899**********556788*********************************************888..7788************** PP

                    S-STTSGGCTHHHHHHHHHHHHHCSTT..-HCHHHHHC-EEEEE--EE---TTSGGGS-TTTS--TTSEEEEEEETTSSSTT-HHHHHHHHHHHHH CS
  Peptidase_M18 274 StsaqGadsnfleevlerisialkkse..afeeavlakSlliSaDvahaihPnysskheenhapllnkGvvikvnanqryatnsagaallkevaqk 367
                    S+ +qGa++nfl++vleri+ +l++s   ++ +++la+S+l+S+Dv ha++Pn+ s + enh p ln+G+ ++ ++n +++t+s+++a+l++ a k
     KKY16247.1 347 SLLRQGARGNFLPSVLERICESLSTSCgpNLYSQMLANSFLVSSDVIHAVNPNFLSAYLENHSPRLNVGIAVSADPNGHMTTDSVSTAVLQRCADK 442
                    *********************998877775555667************************************************************ PP

                    HC-EEEEEEE-TTS----HCHHHHHHHHT-EEEEEE-EEBSTTSSSEEEECCHHHHHHHHHHHCC CS
  Peptidase_M18 368 anvklQelvvrndspcGstigpilaaktGirtiDlGaaqlsmHSireltgskdveeavklfkaFf 432
                     + klQ +++rnds++G+tigp+ ++ +Gir iD G++qlsmHSir++tgs d    vk+fk+Ff
     KKY16247.1 443 CGSKLQLFQIRNDSRSGGTIGPMTSSALGIRAIDAGIPQLSMHSIRATTGSLDPGLGVKIFKGFF 507
                    ****************************************************************9 PP

>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00015       1.3     123     169 ..     299     346 ..     272     357 .. 0.80
   2 ?    2.7   0.0    0.0059        53     196     276 ..     404     486 ..     378     494 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00015
                    ETTECEEETTHHHHHHHHHHHHHHHHHCTSS-S.SEEEEEEESTCTTT CS
  Peptidase_M42 123 langkivskalDdragvavllellkelkeeele.atvylvatvqEEvG 169
                    l++++i +  +Dd++++++++e+l + +++  + +  +  +   EE+G
     KKY16247.1 299 LDKEFIFAGRIDDKLCCYAAVEALLASSDSTSSdIIKMTCCFDDEEIG 346
                    5678899***************99998887755444444444578888 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.0059
                    STTSTTTTSSTTS-CEEEEEETTCCSHHHHHHH.HHHHHHHTT--EEEE.EESS..SSSTHHHHHTSTTTSEEEEEEEEEBSTTS CS
  Peptidase_M42 196 tpgskekeaklgkGpvirvkDasgiyhpklrkk.llelAkknnipyqle.vlsg..ggtDAgaihltgegvptalisiptryiHs 276
                      ++++ +  l+ G+++++  +++++   ++   l+++A+k + ++ql  + +    g   g ++ +  g++++  +ip+  +Hs
     KKY16247.1 404 YLENHSPR--LNVGIAVSADPNGHMTTDSVSTAvLQRCADKCGSKLQLFqIRNDsrSGGTIGPMTSSALGIRAIDAGIPQLSMHS 486
                    44444444..999****9999998888888765167899999999998633333113333455778889***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 3292.72
//
Query:       KKY16248.1  [L=216]
Description: putative 50s ribosomal protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-14   52.1   0.4    1.9e-13   50.2   0.1    2.0  2  Ribosomal_L27  Ribosomal L27 protein


Domain annotation for each model (and alignments):
>> Ribosomal_L27  Ribosomal L27 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.1     1e-17   1.9e-13      41      79 .]      29      71 ..      22      71 .. 0.89
   2 ?   -0.8   0.0     0.087   1.6e+03      17      37 ..     159     179 ..     148     188 .. 0.74

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 1e-17
  Ribosomal_L27 41 gtkfhpGenvgiGkdhtlfAlvdGvVkfe....kkkkrkyvsv 79
                    tk+hpGenvgiG+dht++A+++G+V+++    ++ kr+y+ v
     KKY16248.1 29 STKWHPGENVGIGRDHTIYATETGYVRYYrdpdRHPKRRYIGV 71
                   69***************************77666999999976 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.087
  Ribosomal_L27  17 gkrlGvKkfggqlvkagnIiv 37 
                      +lG    +g +   gnIi 
     KKY16248.1 159 KNQLGSNLRDGDQGAGGNIIW 179
                    457888888899999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1429.11
//
Query:       KKY16249.1  [L=1282]
Description: putative dna damage repair protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-20   72.4   0.3    5.7e-20   70.9   0.0    2.0  2  Tudor_3          DNA repair protein Crb2 Tudor domain
    7.1e-18   65.0   0.0    1.3e-17   64.2   0.0    1.4  1  Rad9_Rad53_bind  Fungal Rad9-like Rad53-binding
    8.7e-09   35.6   0.0    1.1e-07   32.1   0.0    2.9  2  BRCT             BRCA1 C Terminus (BRCT) domain
     0.0067   16.8   0.0       0.24   11.8   0.0    2.8  2  BRCT_2           BRCT domain, a BRCA1 C-terminus domain
  ------ inclusion threshold ------
       0.13   12.1   0.0       0.42   10.5   0.0    1.9  1  RTT107_BRCT_5    Regulator of Ty1 transposition protein 107 B
        0.2   11.7   0.1         19    5.4   0.0    2.6  2  SLT_beta         Shiga-like toxin beta subunit


Domain annotation for each model (and alignments):
>> Tudor_3  DNA repair protein Crb2 Tudor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   1.9e-23   5.7e-20       2      52 .]     830     880 ..     829     880 .. 0.98
   2 ?   -2.1   0.1       1.2   3.7e+03      21      49 ..    1070    1099 ..    1068    1101 .. 0.72

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 1.9e-23
                 GGEEEEE-SSSS--EEEEEEEEEEE-SSSEEEEEETTS-EEEEETTSEEES CS
     Tudor_3   2 pnrVfAlfkGkkraYYPAtclgvsssgsqrykVrFdDgtpeevdskqvrrL 52 
                 pn++fA+f+G++raYYPA+cl+v++s+  ry++++++++p+evd+++v+rL
  KKY16249.1 830 PNQIFACFNGTSRAYYPAKCLSVVTSDPLRYEIQWEGYEPDEVDAHGVKRL 880
                 9**************************88*********************8 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
                  EEEEEE-SSS.EEEEEETTS-EEEEETTSE CS
     Tudor_3   21 clgvsssgsq.rykVrFdDgtpeevdskqv 49  
                  + +++ +++  r+k  F D++ + + ++ v
  KKY16249.1 1070 VAEETPDSTDlRLKFMFRDSKFTALVTDDV 1099
                  5555555555799999****9999887776 PP

>> Rad9_Rad53_bind  Fungal Rad9-like Rad53-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   4.3e-21   1.3e-17       8     129 .]     831     960 ..     826     960 .. 0.86

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 4.3e-21
  Rad9_Rad53_bind   8 kdvifeeavWvqqaklkyYpakilskgtsqd.kvlvkfeega.vevkkedvkyLdlriGdkvkvdm...k..tyvvrglekkisadekv.irci 93 
                      ++++   a + +   ++yYpak+ls+ ts + ++ +++e  +  ev    vk+L+l++Gd vkv++   +   y+++g++ ++s+  k  ++++
       KKY16249.1 831 NQIF---ACFNGT-SRAYYPAKCLSVVTSDPlRYEIQWEGYEpDEVDAHGVKRLELKVGDSVKVNKagvPkiSYIIKGFKPQVSEAAKEiVTDV 920
                      5666...666676.89**********6666526*******999**********************96662589**********98876559*** PP

  Rad9_Rad53_bind  94 rGydtvll..kkvks..sGklgkeelikplseiyldleeW 129
                       G+dt+++  k++ks      +  +++  +++iyld + W
       KKY16249.1 921 FGHDTIIVaaKQRKSlpADINSDATFEVKVADIYLDSNMW 960
                      ********99999998777777888888********9999 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   3.8e-11   1.1e-07       4      78 ..    1015    1124 ..    1012    1125 .. 0.91
   2 ?   -2.0   0.0       1.7     5e+03      16      37 ..    1188    1218 ..    1176    1252 .. 0.55

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 3.8e-11
                  TTTTTEEEEEEESTSSHHHHHHHHHHHHTTCEE............ESSCSTTSSEEEESSS........................HSHHHHHHHHHH CS
        BRCT    4 llfhgckfvitgvldnftrdeleelikehGGkv............ttevskktthlvvgep........................esrslkylealk 64  
                   lf+g++f+i +v ++ +++ + + i+ +GG +            +t++++ t   v+ e+                         sr+ ky++al+
  KKY16249.1 1015 GLFSGMVFAI-SVDETGKKTAWANYIRINGGVLleegfeeifessSTSLTTPTKAKVAEETpdstdlrlkfmfrdskftalvtddVSRKPKYMQALA 1110
                  69********.**********************************88888888888888888888888888888888888888888*********** PP

                  TTSEEEETHHHHHH CS
        BRCT   65 lnipivheewlldc 78  
                  l+ip++h +w++ c
  KKY16249.1 1111 LGIPCIHGSWVVTC 1124
                  ***********999 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.7
                  STSSHHHHHHHHHHHHTTCEE.........E CS
        BRCT   16 vldnftrdeleelikehGGkv.........t 37  
                  ++++++r+    l++ +G+++          
  KKY16249.1 1188 SKTEEKRKPFIFLLRAMGARCitrvhdikaA 1218
                  5566666666777777777774443333331 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   8.2e-05      0.24       3      84 ..    1015    1136 ..    1013    1137 .. 0.73
   2 ?    1.8   0.0      0.11   3.2e+02      47      80 ..    1233    1281 ..    1181    1282 .] 0.69

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.2e-05
      BRCT_2    3 klFeglrFYindaeps.psreklkklIeknGGevveti.....................................tsavyiviaesneee....... 54  
                  +lF+g+ F i  + ++  ++  ++  I+ nGG++ e+                                      +             +       
  KKY16249.1 1015 GLFSGMVFAI--SVDEtGKKTAWANYIRINGGVLLEEGfeeifessstslttptkakvaeetpdstdlrlkfmfrD-------------Skftalvt 1096
                  69********..445548****************666666667666666776655555555555555555555543.............04444444 PP

      BRCT_2   55 ..........laekrkrrvvspkyIkdCikkgkllpleny 84  
                            +a   + + ++ +++  C  ++ +++ +++
  KKY16249.1 1097 ddvsrkpkymQALALGIPCIHGSWVVTCATQNNVVSWRPF 1136
                  444455999999999*****************99988776 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.11
      BRCT_2   47 iaesneee...............laekrkrrvvspkyIkdCikkgkllp 80  
                  +  ++  +                ++++ +rv+ +++I  +i  g+l +
  KKY16249.1 1233 VDDKEVATtkalfqsskrkrtstGRDNNAPRVIGTDFIAQSIILGQLFD 1281
                  333333335556666666678889999**************99888865 PP

>> RTT107_BRCT_5  Regulator of Ty1 transposition protein 107 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00014      0.42      43      98 ..    1081    1136 ..    1057    1138 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00014
                     TEEE-SGCCT-SEEE-SS---SHHHHHHCCCTTEEE-CHHHHHHHHHTS---SGGG CS
  RTT107_BRCT_5   43 GikivqeakkcntliApkilRTeKFLksLskapkilspdfiedvLkkkklldleey 98  
                       k++ + +k + l+++ + R  K++++L+ +   ++ +++ ++ ++++++   ++
     KKY16249.1 1081 RLKFMFRDSKFTALVTDDVSRKPKYMQALALGIPCIHGSWVVTCATQNNVVSWRPF 1136
                     3577788999**********************************999888776666 PP

>> SLT_beta  Shiga-like toxin beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0063        19      15      36 ..     940     961 ..     934     964 .. 0.91
   2 ?    3.3   0.0     0.028        84      13      39 ..    1220    1247 ..    1208    1257 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0063
    SLT_beta  15 yndddtftvkvGdkelftnrwn 36 
                  n d tf vkv d  l +n w 
  KKY16249.1 940 INSDATFEVKVADIYLDSNMWA 961
                 699****************995 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.028
    SLT_beta   13 tkyndddtft.vkvGdkelftnrwnlqs 39  
                  + y dd t+t v v dke+ t +  +qs
  KKY16249.1 1220 AIYIDDPTMTyVVVDDKEVATTKALFQS 1247
                  5699****99678899****99988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       807  (0.0450109); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.85u 0.34s 00:00:01.19 Elapsed: 00:00:00.55
# Mc/sec: 6960.54
//
Query:       KKY16250.1  [L=255]
Description: putative aaa family atpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:00.55
# Mc/sec: 1399.29
//
Query:       KKY16251.1  [L=134]
Description: putative phosphotransferase enzyme family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 872.86
//
Query:       KKY16252.1  [L=470]
Description: putative phosphotransferase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-08   34.8   0.1    3.6e-07   30.4   0.1    2.4  1  APH              Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.035   13.3   0.5        0.8    8.8   0.0    2.2  2  Fructosamin_kin  Fructosamine kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.1     4e-11   3.6e-07       8     202 ..      52     324 ..      45     325 .. 0.62

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 4e-11
                 .SSCEEEEEEETT--EEEEEE-TT....S-HHHHHHHHHHHHHHHHTT-.B--B-CTTB.S-EEETTE.EEEEEE----EE-SS..............H CS
         APH   8 gasnrtylvttpagryvlrrnppa....raaeeirrevallrlLakagv.pvPevlagd.tddeeigl.lfalieyvpgrsllr..............k 85 
                 ga+n + + t  + + vl r+p +    +++e++ +eva+lr+L+++   pvP v++ + t+d  + + ++ ++ yv  ++ l+              +
  KKY16252.1  52 GAYNVVLRMTFQNAKAVLIRFPIPayafEPEEKTLNEVAVLRFLEQHTSiPVPHVFHHGiTNDSLADMgPYIIMDYVTNKDDLTsalntpgltdedrpM 150
                 66774444444456666666555558889****************99888******988688888888*999999999998888888899999999997 PP

                 HHHHHHHHHHHHHHHHHC....CHHCH.........-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC.HHHHHHHH.................... CS
         APH  86 lsaaqlpellealgefla....alhqv........dpaalpladflaqdlellrqlesatarllaselld.lleeleeq.................... 151
                 l+++++++ le +    a    +l  +        ++a+   +++ ++ +++ ++ ++ +  l++  +++ +l+  e+                     
  KKY16252.1 151 LDPNVSYDRLEFVYGQMAeimlQLAKAefssigsiEKANKEDEFDDEWVVKHRPLTMNMNE-LVKVGNFPeDLLPTEAFktassfylslanlhllhlst 248
                 7777777766665555554444444443333333333344444444444444433333322.2222222212222222233333444444444444444 PP

                 ................HHHHHHHH--S..........SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECC CS
         APH 152 ................vlaalaallpg..........elptvllHgDlhpgNllvdpddgrvtGviDfedaglgppl 202
                                 ++++l ++l++          e+p  l   D+++ N+l + ++ ++tG iD+e++ ++p +
  KKY16252.1 249 qhndaiysaedcrrkyIARCLFRRLARegrlhdksneEGPFKLFCDDFRLANVLAN-EQFQITGAIDWEFTYAAPTA 324
                 44444444444444454444444444455558888988888888899*********.*************9888765 PP

>> Fructosamin_kin  Fructosamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   8.9e-05       0.8      58      97 ..      87     131 ..      77     141 .. 0.87
   2 ?    2.1   0.3      0.01        90     143     203 ..     347     403 ..     336     421 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 8.9e-05
  Fructosamin_kin  58 aEaesLealaetqtirvPkvlavGelkdas.....fLvleyLelk 97 
                      +E++ L+ l++ ++i vP+v+++G ++d+      +++++y+  k
       KKY16252.1  87 NEVAVLRFLEQHTSIPVPHVFHHGITNDSLadmgpYIIMDYVTNK 131
                      69999*********************999889999******9887 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.01
  Fructosamin_kin 143 sWaeFfaeqRlgvqlelakekglefakieelvervaellskhqpkpsllHGdLWsgNaalt 203
                      +W+e fa +Rl++ l+++kek+  +a i + v + +++ls+h ++ s   Gd+W+  aa++
       KKY16252.1 347 DWIEKFA-KRLQIFLKVMKEKE--DAAIARGVLQKRHRLSNHMIR-SWESGDFWISYAARK 403
                      7999887.69********9985..677777777778889999887.567899998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 2916.28
//
Query:       KKY16290.1  [L=492]
Description: hypothetical protein UCRPC4_g05952 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       882  (0.049194); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3473.29
//
Query:       KKY16291.1  [L=521]
Description: putative amino acid permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-53  180.2  54.4    7.8e-53  179.8  54.4    1.1  1  AA_permease_2  Amino acid permease
    1.3e-14   53.7  44.3    1.7e-14   53.3  44.3    1.1  1  AA_permease    Amino acid permease
    0.00056   19.8   0.3     0.0065   16.4   0.2    2.4  2  DUF1686        Protein of unknown function (DUF1686)


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.8  54.4   1.3e-56   7.8e-53      14     418 ..      54     481 ..      48     495 .. 0.82

  Alignments for each domain:
  == domain 1  score: 179.8 bits;  conditional E-value: 1.3e-56
  AA_permease_2  14 vigsgifvkn....laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkva....flsawfnwfayvpvlasilsvaas 101
                    +ig+  +  +    ++++ g a+++w+w+++  ++ a ++ +aE++sa p+ gG+y +t+ a +k+v+    +++aw+  ++++++ as++ + a+
     KKY16291.1  54 MIGFCLTGLGtiwfSMGYLGLASMVWGWFVAAFFIHATVFNFAEFGSAYPTAGGLYYWTYLAAPKPVKkiacWITAWSMIISAAFGGASMFLSQAQ 149
                    434333222233445****************9999**********988***************999998889999999999999999****99999 PP

  AA_permease_2 102 yl...lnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffpngwp..g..v 190
                    +l   + +++pd++++tw++yl++ + +il+ l  ++  k +++i + ++++ ++ ++iili+ ++ t ++ ++ ++   t+  +++ w+  +  +
     KKY16291.1 150 MLdafVILFKPDWVPTTWQVYLVYLGNVILCGLCMALPSKVLSRISTACAWVGTVAFFIILIAMPIMTPKHATSKEI--FTSMYNQTAWDnkFlvF 243
                    98765666789*******************************************99999999999999988888754..33334444666443336 PP

  AA_permease_2 191 llgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflg.vvpddei.anlsnlgs.vaalffeavggkvvaiivvilia 281
                     l++l+ +w+++G++s ++ see ++  k vp a+ i+ + v+vl++ +ni++++   ++d + ++   lg+ ++al++  +g++ +a++++++++
     KKY16291.1 244 CLTFLVPAWCISGYDSTVHLSEETRNasKVVPQAMWISTVSVAVLGWIFNIVLAYcTYNIDDVmDSY--LGQpLGALLVSSMGNTNFARFLWFCTV 337
                    8899*******************9998789**********************999345666653433..334158********************* PP

  AA_permease_2 282 lsllgaintavigssrvlealardgvlP..rffakvn.kfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrk 374
                    +s +g i+  +++ sr+++a ardg+lP  +++++vn  +++p++a+i+++++  +l+ l+++as++a+n+l++ ssl+  i y ++i+ + i+  
     KKY16291.1 338 VSNFGVIFVMTTSGSRIYFAYARDGALPfhKWMSHVNtVTKTPVNATITICTCI-ALIGLLYFASETALNALFAGSSLAGSIAYVMPILMRAINEN 432
                    *************************************99**************7.5666777889****************************998 PP

  AA_permease_2 375 krphl.kr..pgk..ilvaiigalfllfllvalffppkgpatqssliyt 418
                    ++    +    g+  +++ +i++lf++f++ ++ fp     t + + ++
     KKY16291.1 433 NPDWInGPftLGRlgPPLRWIAILFTFFTIPIFSFPYHPNPTAEQFKWS 481
                    85533222332224489999*********99999884433333333222 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3  44.3   2.8e-18   1.7e-14      17     473 ..      60     503 ..      48     506 .. 0.73

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 2.8e-18
  AA_permease  17 vglgvv...lsqaGplgallayllagvviflvmlslgeiatngpksggfyty....asrflgpelGfviGlnylfswitvlaleltaasiliqfwelv 107
                  +glg +    +  G+++++ ++ +a ++i +++ +++e+ +++p +gg y++    a + +++ + + ++++      + + +++++as++++ ++++
   KKY16291.1  60 TGLGTIwfsMGYLGLASMVWGWFVAAFFIHATVFNFAEFGSAYPTAGGLYYWtylaAPKPVKKIACWITAWS------MIISAAFGGASMFLSQAQML 151
                  44554400044556666699*******************************944555666666777777777......55555555777777777433 PP

  AA_permease 108 tdlpkawvt...........gavflvvlliinlvgvkvygeaefilalikiiaiiafiivg.iillaggkpnkga.gfrflgdngsifknnlppgfak 192
                  ++    + +            +v l+ ++++ l+ +  +   + i + ++ +  +af+i++ +++++  k +     f++++++++       ++   
   KKY16291.1 152 DAFV--ILFkpdwvpttwqvYLVYLGNVILCGLCMALPSKVLSRISTACAWVGTVAFFIILiAMPIMTPKHATSKeIFTSMYNQTA-----WDNK--- 239
                  3333..22245666777777999999999999999999999999966666666666666664555555444444348888888888.....5555... PP

  AA_permease 193 eeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlap 290
                       f+ f+  f + +  ++G+ +++ +++E+++ +k +P a+    + ++++  ++ + + + + +n ++++ + + + ++  +  ++ g+  +a 
   KKY16291.1 240 -----FLVFCLTFLVPAWCISGYDSTVHLSEETRNASKVVPQAMWISTVSVAVLGWIFNI-VLAYCTYNIDDVMDSYL-GQPLGALLVSSMGNTNFAR 330
                  .....*************************************997666666666655444.44566777777777666.458999************* PP

  AA_permease 291 linaviltaalssansslysasRvlyslakdglaP..kvlkkvsk.rgvPlraillsm.iisllalllaslnlaapivfnfllaisaliglivwllii 384
                  ++ +++ ++ ++++  +++s+sR+++++a+dg++P  k+++ v+   + P++a +  + +i+l++l   +++++  ++ n l a s l+g i +++ i
   KKY16291.1 331 FLWFCTVVSNFGVIFVMTTSGSRIYFAYARDGALPfhKWMSHVNTvTKTPVNATITICtCIALIGL--LYFASE--TALNALFAGSSLAGSIAYVMPI 424
                  *************************************999999864799***97655505555555..778888..99****************9987 PP

  AA_permease 385 lsylrfRkalkyqgrsieelgfkaallplgvilvlaa.liiillilalyayltvkkgpkdwgaasfaaaylivllfl..iilvgvklhvknk 473
                  l  +      + +  +i+  +   +l+p + ++++++ + +i ++ + y + +         +a ++++ + v l +  i++ ++++ ++++
   KKY16291.1 425 LMRA----INENNPDWINGPFTLGRLGPPLRWIAILFtFFTIPIFSFPYHPNP---------TAEQFKWSVPVWLGImaIVIPWYFFSARKW 503
                  7555....455677888877777788988888876651445556666666666.........455555555444433114455566666665 PP

>> DUF1686  Protein of unknown function (DUF1686)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   1.1e-06    0.0065      93     172 ..     168     251 ..     163     257 .. 0.80
   2 ?    0.2   0.0     0.098   5.9e+02       5      32 ..     404     431 ..     400     434 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.1e-06
     DUF1686  93 qvcvvvlgnillasaclagd.klllpgvedrsslvcvglvvfaallllvsyveeggkkakaeevgevvks........vvlvlsvlvlt 172
                 qv  v lgn++l  +c+a + k+l   +   + + +vg+v f ++l+++ ++    k+a+++e+ + + +        +v+ l+ lv+ 
  KKY16291.1 168 QVYLVYLGNVILCGLCMALPsKVL---SRISTACAWVGTVAFFIILIAMPIMT--PKHATSKEIFTSMYNqtawdnkfLVFCLTFLVPA 251
                 8999**************876653...3445567789***************9..7778888777767667788888888888888765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.098
     DUF1686   5 swntalyvlavaGtiiyqiwvLakeyrd 32 
                 ++n +    ++aG i+y + +L++ + +
  KKY16291.1 404 ALNALFAGSSLAGSIAYVMPILMRAINE 431
                 56667777799***********987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       897  (0.0500307); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3650.77
//
Query:       KKY16292.1  [L=337]
Description: putativeoxoglutarate 3-dioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-21   77.1   0.0    3.1e-21   76.3   0.0    1.4  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
      5e-18   65.4   0.0    1.9e-17   63.6   0.0    1.9  2  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   3.5e-25   3.1e-21       1     117 [.       4     150 ..       4     151 .. 0.89

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 3.5e-25
      DIOX_N   1 iPvidlspl....sddedraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFF.alPeeeKekl..aksp.......sfrGysrlgeektdg. 84 
                 +P+id+s++    s+dedr  +a++l++AcrevGffy+++hg+p+el+  +++++r FF    e+eKe +  +  +         rG++r++  +  + 
  KKY16292.1   4 VPIIDFSKFldpnSTDEDRLTCAKELDRACREVGFFYITGHGIPAELLTTMLDTTRAFFeTATEDEKESIktK--KagdgigdDARGFQRVNGGSKGSh 100
                 8**********9777799*****************************************5578999**99643..2235677799****9977777668 PP

      DIOX_N  85 .................kkldwkesfdlgtelpeddpagkplegpnqwPe 117
                                  k l +  ++d++++++++ p +++  g nqwP+
  KKY16292.1 101 evrfidtvtdmtvpspnKSLIMLQCIDFYRPVENQGPPYTTGMGVNQWPK 150
                 99************999999999********999999999*********7 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.41   3.7e+03      37      73 ..      84     125 ..      82     138 .. 0.59
   2 !   63.6   0.0   2.2e-21   1.9e-17       6     100 ..     201     298 ..     197     299 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.41
                   E-TT---EEEE...TE..EEE----TTEEEEEE-HHHHHHTT CS
  2OG-FeII_Oxy  37 ddvgglevfkd...gk..wlrvppvdnslivniGdallflsn 73 
                   dd  g++ ++    g+  + ++++v++ +++ ++ +l +l +
    KKY16292.1  84 DDARGFQRVNGgskGSheVRFIDTVTDMTVPSPNKSLIMLQC 125
                   666666553223332234666666667777777776655555 PP

  == domain 2  score: 63.6 bits;  conditional E-value: 2.2e-21
                   EEEE..E-S---------EEEEEESSSEEEEEEE-.TT---EE.EETEEEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTGSEEEEEEE CS
  2OG-FeII_Oxy   6 vlny..ypphpdpevilglgahtdaslltillqdd.vgglevf.kdgkwlrvppvdnslivniGdallflsngryksvlHrVlpvnegerRvsiayf 98 
                   +l y   +p  d+e+  g+g htd ++lt+ll+d+ ++ l+v+ k+g+w+  +p +++l+ niGd+l  +++g yks+lHrV    ++  R+si  f
    KKY16292.1 201 LLAYegKEPKVDKEKVAGIGQHTDFGILTMLLTDPqKNSLQVLsKSGDWVPADPIPGCLTCNIGDMLSKWTDGLYKSTLHRVIHNSPNM-RISIPMF 296
                   556655578889999********************99*****956688**********************************9555555.****999 PP

                   E- CS
  2OG-FeII_Oxy  99 ie 100
                   + 
    KKY16292.1 297 FD 298
                   86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2284.08
//
Query:       KKY16293.1  [L=712]
Description: hypothetical protein UCRPC4_g05955 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-46  157.2   0.1      1e-45  156.7   0.1    1.2  1  ADP_ribosyl_GH  ADP-ribosylglycohydrolase


Domain annotation for each model (and alignments):
>> ADP_ribosyl_GH  ADP-ribosylglycohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.7   0.1   5.6e-50     1e-45       2     287 ..      17     307 ..      16     310 .. 0.94

  Alignments for each domain:
  == domain 1  score: 156.7 bits;  conditional E-value: 5.6e-50
                     HHHHHHHHHHHHGGGTT--HHHHHHHTSS--S-----STTTTTS-TT---HHHHHHHHHHHTEET....TEE-HHHHHHHHHH.HHT.....T-- CS
  ADP_ribosyl_GH   2 allGaavGDAlGlpvefwsydeirrrygelgetpdktgfghfglkpgewtddtqmallllesllea...ggldpedlarrflaeWlee.pgdtep 92 
                     ++lG ++G  lG p+e+w+  +i +++g +     ++ ++  + +    +dd + ++l+l++l+e+    +++pe++ +     Wl++  ++++ 
      KKY16293.1  17 GVLGKLIGVYLGRPFEGWTHQRIMNELGTIR----HYVHEQLDVPLVVTDDDVSGTFLFLRALEEHgysSDISPEAIGKT----WLNNiVEKQSV 103
                     689*************************998....88888888888888*****************76666688888888....88876666666 PP

                     SS--....HHHHHHHHHTTTT-...-S-B.......---BTTTGGG-HHHHHHTSS-HHHHHHHHHHHHHTTB--HHHHHHHHHHHHHHHHHHTT CS
  ADP_ribosyl_GH  93 rgig....nttrealrnlksgepppeagana....ngsagngalmRaaplgllyagdpeeaaelaeeaarlTHnhpeavagaaayaaliaaalrg 179
                      ++g    +t+++a+ nlk+g+p+p++g+ +    + + ++ga++ ++ ++++++gdp +aa+la++aa+++H++ eav +a ++aa+ a+a+  
      KKY16293.1 104 LWWGgngiSTEHTAFLNLKRGIPAPRSGSIEvngqTIAEQIGAQIFIDGWAMVCPGDPVRAAKLARAAASVSHDG-EAVFAAQLLAAMEAEAFVS 197
                     66666667************************998888888**********************************.******************* PP

                     --STHHHHHH..HHHHTTT-HHHHHHHGGGGG---HHH.............HHHHH--SSBHHHHHHHHHHHHHH.-SSHHHHHHHHHTS-SSHH CS
  ADP_ribosyl_GH 180 ksleealdaaeeelavapaeeelaaalrkalaladsdkd.....vdvdaeeavdelgsggyavealaaalyallhaaddfeeallaavnlGgDtd 269
                     k+++  ld++   l+v+p ++ +++ +r+++++a  dkd     ++ ++++ +d++ + +++ ++  +++ al+++++df  a+  +  +G+Dtd
      KKY16293.1 198 KDVNHLLDTG---LSVIPMDCLVSKLVRDIRSWAAIDKDwlqtrQRIEDSYGYDKFPGICHMIPNHGLIILALIYGGNDFHVAMSIVNTCGWDTD 289
                     **********...********************************************************************************** PP

                     HHHHHHHHHHHHHH-GGG CS
  ADP_ribosyl_GH 270 ttgaiaGallGalyGlea 287
                     ++   +G+l+++++Gl+a
      KKY16293.1 290 CNSGNVGCLVALMHGLQA 307
                     ***************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 4594.86
//
Query:       KKY16294.1  [L=404]
Description: putative integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.2   0.1       0.87    9.3   0.0    2.1  2  DUF1349   Protein of unknown function (DUF1349)


Domain annotation for each model (and alignments):
>> DUF1349  Protein of unknown function (DUF1349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   4.9e-05      0.87     119     159 ..     143     183 ..      98     185 .. 0.76
   2 ?    0.0   0.0     0.033     6e+02      30      58 ..     281     309 ..     278     314 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 4.9e-05
                 EEEEETTEEEEEEESSSS-...........--EEEEEE--S-S-EEEEEEEE CS
     DUF1349 119 rlsrrgddlaieysldgen...........wkllRlfhldadeevkvGvyac 159
                  l            + g+n           w+++R  ++++++++ vGv+ c
  KKY16294.1 143 YLA-----------NAGTNiatdvmtymlpWNTVRKLQIPKKQKIAVGVMLC 183
                 333...........4444455555555555********************99 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.033
                 TTT--EEE--EEEEEEESS-EEEEEEEEE CS
     DUF1349  30 thygfrrdnapflltevagdftaevkvkg 58 
                 t+ g r+++a ++ ++ +g  ++++ ++g
  KKY16294.1 281 TYNGARSNSASYYGRDLKGAHSMTTSISG 309
                 77889999999999**********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.51
# Mc/sec: 2366.25
//
Query:       KKY16295.1  [L=519]
Description: putative cytochrome p450 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-61  208.9   0.0    2.2e-61  208.1   0.0    1.3  1  p450        Cytochrome P450
      0.008   15.3   1.6      0.012   14.7   1.6    1.2  1  XK-related  XK-related protein


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.1   0.0   2.4e-65   2.2e-61      12     443 ..      57     493 ..      47     503 .. 0.81

  Alignments for each domain:
  == domain 1  score: 208.1 bits;  conditional E-value: 2.4e-65
                 CHHHHTT...TCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH.HHHHHHHHHHHHHH CS
        p450  12 nllqlgr...keelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang.ekwkklRrfltptl 106
                   l+++    k+  + v+ +l+kkygp++r+ +   +  v+s++    e++++++++++       +     + k+++v++++  +++   R+++    
  KKY16295.1  57 TRLWIAYhnlKGDEYAVVYDLHKKYGPVLRVTP---TLLVVSDSTKLPEIYNRHADKTKH----YITG---SFGKTESVFNMQDhKQHAYFRKMIAGPY 145
                 4444444346566677899***********975...789999999*********633333....2333...367899****999778888899999999 PP

                 TSHSTTTHHHHHHHHHHHHHHHHHCCCCHCS.EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH.HHTCCSC CS
        p450 107 tsfgklsleelveeeaedlveklrkkagess.elditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfp.llkylpt 203
                  +++ +++e+l++  + d ++kl+++      ++d +++  ++a+d+i+++ Fg++f+ +e+ ++     +++  ++ l   +  +  l p   ++  t
  KKY16295.1 146 SFSNVKRMEPLLDARITDWIAKLETNFAGTReSFDFAPWAVYMAYDIISEVGFGSPFGFVEKGED--VGGLIQGFHDGL-PAFGLMARLHPfTTWIKQT 241
                 8884458*****************986555559*************************9999974..556666665555.3333444444434444445 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC........SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH CS
        p450 204 kllrklkeavkklkdlldklieerretldsa........kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPe 294
                 + + k+  a  + +  +  l++ r + + ++        + sr d+l+ +l+a+ +++g+  l+ + ++a+vl +l+aG dTt ++ +  +++  +n +
  KKY16295.1 242 WVGDKYLVAKPEDESGIGTLMRFRDKLIAQRikdieagsNASRIDLLQTFLDAR-TEDGK-PLDLDYIKAEVLLVLLAGADTTGTAFQALMTLVFTNTT 338
                 555555444333333344444444444444444444448889***********8.99999.************************************** PP

                 HHHHHHHHHHHHCCTTT...T-HHHH.CCT-HHHHHHHHHHHHHSCSSTTEEEEESSS.CEEETTEEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGG CS
        p450 295 vqeklreEidevlgdkr...eptydd.lqklpyldavikEtLRlhpvvplllpRevtk.dvvirgylipkGtevivnlyalhrdpevf.pnPeeFdpeR 387
                 v +kl+ Eide+ +  r    p+y++ +++ py  a+ikEt+Rl p +p   pR+v k  +vi++ + p+Gte++ n++ +hrdp+++ +++e F+peR
  KKY16295.1 339 VYAKLMTEIDEATKAGRlseVPQYEEvITHCPYYVACIKETMRLWPSAPNIFPRVVGKgGMVIEDKFAPEGTEISCNPWIVHRDPKIYgDDAEDFRPER 437
                 *************9889899888876379********************999****9999*************************************** PP

                 GB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSG CS
        p450 388 FldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdp 443
                 +l+ +++ k  + + ++FG G+R C+G+ +A me+     +++++F+ve+ + ++p
  KKY16295.1 438 WLESEEKAKEYNKYNMGFGYGARVCLGRDVALMEMYKGPLQFFRKFRVEVVNPQKP 493
                 ******9999999************************************9765544 PP

>> XK-related  XK-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   1.6   1.4e-06     0.012     315     340 ..      19      44 ..       5      45 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-06
  XK-related 315 lvllvvlvsfllGivfmllYYkffHP 340
                  ++l++++ ++lG + +++YY+ffHP
  KKY16295.1  19 NLVLAIFAYYILGFCAQIVYYRFFHP 44 
                 46677********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3594.12
//
Query:       KKY16296.1  [L=492]
Description: putative sugar transporter stl1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-67  227.1  25.1    1.4e-65  221.9  20.6    2.0  2  Sugar_tr  Sugar (and other) transporter
      1e-14   54.2  32.0      1e-14   54.2  32.0    1.9  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.4     4e-05      0.35       6      68 ..      17      72 ..      12      74 .. 0.71
   2 !  221.9  20.6   1.6e-69   1.4e-65      87     452 .]      69     441 ..      66     441 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 4e-05
                HHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHH CS
    Sugar_tr  6 alggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagl 68
                +lg + fg+d gv+g++l  ++f+   g  + +  ++     +++++s flv + +G  ++g+
  KKY16296.1 17 SLGFITFGWDAGVLGGILLTPEFQATIGSPTDT--YK-----LSMVTSTFLVASWLGFEIIGT 72
                556699****************87777776666..44.....467777777776666555554 PP

  == domain 2  score: 221.9 bits;  conditional E-value: 1.6e-69
                 HHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS.-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHH CS
    Sugar_tr  87 vigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiA.pkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpalll 184
                 +ig+++++ +    s+ +l++gRv++Gig G+ + ++P+y++E+A  +++Rg+ v     + ++G  +a+++++g+ + ++   wr+++++q++++ll 
  KKY16296.1  69 IIGTIISVSSY---SYGQLVAGRVFIGIGNGFMTSMIPVYVAEMAtETRYRGKGVNAMIAGASLGTALAYWVDFGMVYATGPAVWRFPVAFQIFWSLLT 164
                 79999999999...*******************************6689***************************8888889**************** PP

                 HHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH..........HTTHHHHSH......HHHHHHHHHHHHHHTTHHHHHH CS
    Sugar_tr 185 lilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeee.....kaswkellsskt...vrqrlligvvlqifqqltGinaimy 275
                 +++l+  P++Pry++ k+ + ea++vl++l g ++ d+ +a+ k+++ a+ e e        +k ++   +     +r+ +g+ l  +  l Gi +i+y
  KKY16296.1 165 MAVLWPNPDTPRYYYAKDLTGEADTVLERLYGAPLTDKHVAQAKAEILASLELEkadtaRLRLKDFFWDTSdmqAARRIRTGMILIGVAYLMGIDMIFY 263
                 ******************999************99999999999999999888767767555555554444577889********************** PP

                 HTTTHHHH.SS-THHHHHHHHHHH...HHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH...HHHHTTSS...CHHHHHHHHHHHHHHHTTTTH CS
    Sugar_tr 276 ysptifen.lglsksllvtiivgv...vnfvatfvaiflvdrfGRRtllllGaagmaicfvilg.ivalllvakskaasivaivfialfialfalgwgp 369
                 y +tif+  +gl  + +++++ g+   v +++  +++f +++fGRRt l+ Gaag++i+++ ++    +++v++    + +a ++++ +ia+f+++w+p
  KKY16296.1 264 YMTTIFQVyIGLASQ-TASGLAGAattVLAITNYCGVFYMEKFGRRTWLIAGAAGQTIFMAAFTgLLSHPGVKT----GAAAAAMLFCWIAVFGPTWAP 357
                 ******972566666.666666551116667789**************************99998999999999....9******************** PP

                 HHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH.T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 370 vpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaig.ggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 v +v++sE+ p++ R ++ a++v ++w + fl+ +  p++    + g+++ + f +++ l+i fv+f+ pet g tlee++ +f
  KKY16296.1 358 VTYVYASEIMPLRYRHIGFALSVSCQWAMAFLTVFAGPVAIADPSvGWKTWIWFLVFNFLAIPFVYFCCPETRGHTLEEVDLIF 441
                 **************************************9988888679999999*************************99776 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2  32.0   1.2e-18     1e-14      64     348 ..      59     386 ..      11     391 .. 0.71
   2 !    7.3  16.0   0.00022         2      47     186 ..     293     438 ..     292     457 .. 0.71

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 1.2e-18
       MFS_1  64 vlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslg...Wravfyil 157
                 +l+++ l+f + +++++++s ++  l+++rv+ G+g g++++++ +++a+++++ + rg+++  + ag+slG++l++ +   ++ + g   Wr +  + 
  KKY16296.1  59 FLVASWLGFEIIGTIISVSSYSYgQLVAGRVFIGIGNGFMTSMIPVYVAEMATEtRYRGKGVNAMIAGASLGTALAYWVDFGMVYATGpavWRFPVAFQ 157
                 4455555555554555543445559*****************************99************************9999899999999999999 PP

       MFS_1 158 aivsllafvlfllllpeepperkrkspkeee.........................kgtgpaplvp.......awkallkdpvlw.............. 210
                  + sll +   +l+   + p+    ++ + e                                              l+ + ++w              
  KKY16296.1 158 IFWSLLTMA--VLWPNPDTPRYYYAKDLTGEadtvlerlygapltdkhvaqakaeiL--------AslelekaDTARLRLKDFFWdtsdmqaarrirtg 246
                 999999944..3555444444444444444489999777777777666544443331........2444444434445555566777777777777787 PP

       MFS_1 211 illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt...ssavllllv 306
                 ++li++++  +g+ ++++++++++q   gl+   +a++l +++  v ai   ++ +++ ++grr+ l+ + ++ +++ +++  l      ++ ++++++
  KKY16296.1 247 MILIGVAYL-MGIDMIFYYMTTIFQVYIGLA-SQTASGLAGAATTVLAITNYCGVFYMEKFGRRTWLIAGAAGQTIFMAAFTGLLSHpgvKTGAAAAAM 343
                 677777777.59999*******99*******.57777778888888888899999999****9777777777766655555433333576777777779 PP

       MFS_1 307 lvliGfglgfvfpsll.alasdlappeeagtasglfntagslg 348
                 l+++   +g ++++++ ++as+ +p +++   ++l  +++ ++
  KKY16296.1 344 LFCWIAVFGPTWAPVTyVYASEIMPLRYRHIGFALSVSCQWAM 386
                 9997777777755555056777778877776666666555555 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00022
       MFS_1  47 vaslplGrlsdrfGrrrvlllglllfalglllll..fa.....sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgp 138
                 ++++ + + +++fGrr +l++g+++  +++++++  ++     ++  + + l +  ++++ + +p+ +++++++ p + r  +++l  ++  + a l+ 
  KKY16296.1 293 ITNYCGVFYMEKFGRRTWLIAGAAGQTIFMAAFTglLShpgvkTGAAAAAMLFCWIAVFGPTWAPVTYVYASEIMPLRYRHIGFALSVSCQWAMAFLT- 390
                 6677778899*******************33333433344445334445555556688889999*************999999977666655555555. PP

       MFS_1 139 llgg..lla.sslgWravfyilaivsllafvlfllllpeepperkrkspke 186
                 +++g  ++a  s+gW  +++ + ++ +la+ +  +++ +++++ ++ ++++
  KKY16296.1 391 VFAGpvAIAdPSVGWK-TWIWFLVFNFLAIPF--VYFCCPETRGHTLEEVD 438
                 5555566667899998.455556777777555..88877777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.52
# Mc/sec: 2850.21
//
Query:       KKY16297.1  [L=360]
Description: putative protein lysine methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.8   0.6      0.024   14.9   0.6    1.4  1  I_LWEQ    I/LWEQ domain
      0.052   13.9   0.0      0.068   13.6   0.0    1.3  1  SET       SET domain


Domain annotation for each model (and alignments):
>> I_LWEQ  I/LWEQ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.6   2.6e-06     0.024      12      77 ..     105     172 ..     101     189 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.6e-06
      I_LWEQ  12 isAAkaVaaaanlLveaadavvqgk..akeeeLivaakevaastaqLvvasrvKadknskslkrLeaa 77 
                 +sA++a +++    ++aad+ v+ +    +ee+i+aa  +a  ta L+ a+r   +++  + ++L+++
  KKY16297.1 105 LSAVEALGKSSRQKTTAADDEVERQpsPPNEEIIAAAWHTAERTAELIRAARLSDRASKAERRALNQV 172
                 5899999999999999******999777789**********************988887777788775 PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.5e-06     0.068       1      37 [.      22     121 ..      22     244 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.5e-06
                 SCEEEESSXBXTTXEEEEEE.ECCEECHHHHHHHHHH.............................................................. CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.............................................................. RF
         SET   1 GrGvfAtedIpkgeficeyp.eeiiltkdeadksele.............................................................. 36 
                 GrG++A+++I k ++++e p  ++ +   +++k+++                                                               
  KKY16297.1  22 GRGIYARKRITKTTLLFETPgLSASVVYRQYRKEVCTycfaydrgrqwklrdaqtgvafcgeecrelwkgefslddhairlealsavealgkssrqktt 120
                 9****************9888444555555555555555555555558888888888777777777775555555554444444333333333332222 PP

                 H CS
                 x RF
         SET  37 a 37 
                 a
  KKY16297.1 121 A 121
                 0 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2321.03
//
Query:       KKY16298.1  [L=1178]
Description: putative abc multidrug [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-46  156.5   0.0    6.3e-26   91.5   0.1    2.5  2  ABC_tran       ABC transporter
    5.3e-39  134.5  22.5    5.7e-20   72.1   4.4    2.2  2  ABC_membrane   ABC transporter transmembrane region
    2.9e-12   46.5   1.6      0.028   13.9   0.6    4.2  3  SMC_N          RecF/RecN/SMC N terminal domain
      1e-07   32.7   1.1    0.00015   22.4   0.1    2.4  2  AAA_23         AAA domain
    3.1e-07   30.5   3.2     0.0024   17.7   0.5    4.0  4  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    8.3e-07   29.4   0.2       0.16   12.2   0.0    3.5  3  AAA_22         AAA domain
    1.2e-06   28.6   0.1    0.00095   19.1   0.0    2.3  2  RsgA_GTPase    RsgA GTPase
    2.2e-06   27.3   1.9      0.016   14.9   0.1    2.6  2  AAA_29         P-loop containing region of AAA domain
    3.7e-06   26.8   0.2       0.16   11.7   0.0    3.5  3  IstB_IS21      IstB-like ATP binding protein
      5e-06   26.2   0.2       0.14   11.7   0.0    2.9  3  AAA_25         AAA domain
    2.8e-05   23.9   0.0       0.28   10.9   0.0    3.0  3  AAA_24         AAA domain
      3e-05   23.2   0.2       0.17   10.9   0.0    2.5  2  T2SSE          Type II/IV secretion system protein
    6.8e-05   22.4   0.8       0.29   10.5   0.1    2.3  2  Pox_A32        Poxvirus A32 protein
    8.1e-05   22.4   0.4      0.039   13.7   0.0    3.5  3  AAA_30         AAA domain
     0.0002   21.8   0.1          2    8.9   0.0    3.5  3  AAA            ATPase family associated with various cellular
    0.00034   21.0   5.5      0.088   13.2   0.0    3.4  2  AAA_16         AAA ATPase domain
     0.0011   18.9   2.2        1.4    8.8   0.1    3.0  2  NACHT          NACHT domain
     0.0012   19.0   0.2        2.2    8.4   0.0    2.6  2  MMR_HSR1       50S ribosome-binding GTPase
     0.0016   18.7   1.5        1.7    8.9   0.0    3.3  2  SbcCD_C        Putative exonuclease SbcCD, C subunit
      0.002   17.6   1.5        1.3    8.4   0.1    2.6  2  PhoH           PhoH-like protein
      0.003   17.7   2.9       0.53   10.4   0.1    3.0  2  AAA_33         AAA domain
     0.0033   17.5   0.0        3.3    7.7   0.0    3.2  3  AAA_14         AAA domain
     0.0035   17.1   0.2      0.077   12.7   0.1    2.2  2  AAA_15         AAA ATPase domain
     0.0038   17.8   0.0        2.2    8.8   0.0    2.6  2  AAA_18         AAA domain
     0.0039   17.3   3.3      0.022   14.8   0.2    2.4  2  DUF87          Helicase HerA, central domain
     0.0041   16.9   1.2        1.6    8.4   0.0    3.1  3  AAA_11         AAA domain
     0.0049   17.1   0.0        2.9    8.1   0.0    2.5  2  Roc            Ras of Complex, Roc, domain of DAPkinase
     0.0051   16.6   0.0        3.2    7.5   0.0    3.1  3  DEAD           DEAD/DEAH box helicase
     0.0055   16.5   1.2        1.7    8.4   0.1    2.5  2  PduV-EutP      Ethanolamine utilisation - propanediol utilisa
     0.0057   16.0   0.4          3    7.1   0.1    2.4  2  FtsK_SpoIIIE   FtsK/SpoIIIE family
      0.006   16.6   0.0        8.4    6.5   0.0    3.2  2  CbiA           CobQ/CobB/MinD/ParA nucleotide binding domain
     0.0066   16.5   1.1      0.047   13.7   0.1    2.4  2  Dynamin_N      Dynamin family
     0.0068   16.0   3.5       0.14   11.7   0.4    2.4  2  cobW           CobW/HypB/UreG, nucleotide-binding domain
     0.0078   16.5   1.5        1.4    9.1   0.2    2.7  2  AAA_28         AAA domain
     0.0082   15.7   0.4          2    7.9   0.1    2.5  2  AAA_7          P-loop containing dynein motor region
     0.0084   16.1   0.0        1.3    8.9   0.0    2.6  2  ResIII         Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.013   15.5   0.1        1.1    9.1   0.0    2.5  2  ATPase_2       ATPase domain predominantly from Archaea
      0.014   15.3   1.4        1.7    8.6   0.1    2.5  2  MobB           Molybdopterin guanine dinucleotide synthesis p
      0.016   14.2   0.8        1.2    8.0   0.1    2.2  2  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
      0.016   15.2   1.3        6.7    6.7   0.1    3.2  3  AAA_5          AAA domain (dynein-related subfamily)
      0.018   14.3   1.0        1.4    8.1   0.2    2.7  2  NB-ARC         NB-ARC domain
      0.023   14.3   0.1      0.099   12.3   0.0    2.0  2  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
      0.045   13.2   0.0        5.3    6.4   0.0    2.2  2  RecA           recA bacterial DNA recombination protein
      0.063   12.1   3.5       0.91    8.2   0.0    2.6  2  ABC_ATPase     Predicted ATPase of the ABC class
      0.092   13.2   0.2         11    6.4   0.0    2.6  2  AAA_17         AAA domain
      0.097   12.1   1.8        1.9    7.9   0.0    3.0  3  SRPRB          Signal recognition particle receptor beta subu
       0.11   12.6   0.1         12    6.0   0.0    2.4  2  TsaE           Threonylcarbamoyl adenosine biosynthesis prote
       0.15   11.3   0.1        3.5    6.8   0.0    2.1  2  Septin         Septin
       0.16   11.7   1.5         14    5.3   0.1    2.6  2  ATP_bind_1     Conserved hypothetical ATP binding protein
        0.2   12.1   0.1         24    5.4   0.0    3.0  2  RNA_helicase   RNA helicase
       0.24   11.3   0.8         19    5.1   0.1    2.4  2  NTPase_1       NTPase
       0.29   10.4   0.9         11    5.3   0.1    2.3  2  ATPase         KaiC
       0.42    9.8   0.9         12    5.0   0.0    2.4  2  DUF2075        Uncharacterized conserved protein (DUF2075)
       0.55   10.6   2.3         10    6.4   0.0    2.9  2  AAA_19         AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   1.6e-19   5.3e-17       1     134 [.     314     446 ..     314     449 .. 0.83
   2 !   91.5   0.1   1.9e-28   6.3e-26       2     137 .]     915    1093 ..     914    1093 .. 0.86

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 1.6e-19
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHHTCHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.........esdeeiekals 90 
                 l+ +++++ e+ + +ivG++G+GK+tLl +l+g+   + G++                + +g+ +q++ l++ + +r+n         e+ +++ +a  
  KKY16298.1 314 LQSIDVTFTENALNVIVGPSGSGKTTLLLALLGEAILETGSV-------------TCPRDVGYASQTAWLQNLS-IRDNilfysdynpERYQRVVDACC 398
                 67899*************************************.............67899*******8888877.9******88876633333333333 PP

                 HSTTGG....TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEES CS
                 xxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  91 klglke....lkdtvvksspssLSgGqkqrvalarallkkpkllllDE 134
                  l + +     + t v+++++ LSgGq+qrva+ara+ +  +llllD+
  KKY16298.1 399 LLPDFDdlehGDSTEVGENGTALSGGQRQRVAVARAIYSPCSLLLLDD 446
                 33333344447789999999***************************8 PP

  == domain 2  score: 91.5 bits;  conditional E-value: 1.9e-28
                  EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................... RF
    ABC_tran    2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................... 79  
                  ++vs+++k+g++vai+G++G+GK+tL+  ++ l++   G+il+dg d+++++l++lr+++ ++pq+p lf++  ++ n                   
  KKY16298.1  915 SDVSFSVKAGQRVAIIGRTGSGKTTLALSMLSLTHISHGRILIDGVDIRDITLHRLRSSLTIIPQDPILFSGD-LQYNldpsqtlakhenvisalla 1010
                  69****************************************************************9999999.77778999999888888888888 PP

                  ..........HHHTCHHHHHHHSTTGG...............TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  ..........xxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   80 ..........esdeeiekalsklglke...............lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                             s++ ++ ++s+  + +               + +t ++++++++S Gq+q + lara+++++k+++lDE+ta
  KKY16298.1 1011 cqkvkalskaPSSASLSSIASSAANGHvtagtqpfkqsiphiTLQTQISEKGENFSPGQRQVLGLARAIARRSKVVILDEATA 1093
                  8777776666333334444444444447777777788888887888889999*****************************96 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   4.4   1.7e-22   5.7e-20      95     266 ..      82     251 ..      77     259 .. 0.89
   2 !   68.2  10.2   2.7e-21   8.8e-19       6     266 ..     582     838 ..     577     846 .. 0.90

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 1.7e-22
                   SCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH CS
  ABC_membrane  95 nsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgir 191
                    +vG++l++ + dv+ +  +  + +++   ++ + +g+l ++  lgw +++v+l++++l i++  ++++++ ++++  ++a++ + s++ E ls ir
    KKY16298.1  82 SPVGRVLNLTSYDVDGITGSRDFVFICSAAPVELTLGILFLYKMLGW-VAFVGLGLMILSIPIPSFLSRRMAQAQRGVMSATDSRISLISEYLSSIR 177
                   689***************99999999999999999999999999***.79*********************************************** PP

                   HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHH CS
  ABC_membrane 192 tVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflsl 266
                    +k+f++e+y++ + ++a+ ++++  +k+++++ ++++++++++l+s ++++ f +t+v   +l+++  ++ ++ 
    KKY16298.1 178 IIKYFAWEPYMIGRVTEARATEQRLIWKRLTYSIAIMIFSDFVPLFSLFIMFIF-YTTVRGLDLTSSIGFTSMTV 251
                   ***************************************************764.33333336666665555555 PP

  == domain 2  score: 68.2 bits;  conditional E-value: 2.7e-21
                   HHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHH CS
  ABC_membrane   6 llailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGells 102
                    + +l++++ + + l+l+ ++  +++++  +   + +y+ +++ ++    +++ l +  +   g ++ k++++kl+++++++p+s+ d n+vG++++
    KKY16298.1 582 AACALTQFCFFSITLWLSVWVGAYNQHQAVN---VGFYIGIYACIMGSFHVMSALNQLSFQRGGWQAAKAMHWKLINSVMSAPLSWLDANPVGRIIN 675
                   5556788899999***********9855444...59999999999999999999999999************************************* PP

                   HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTT. CS
  ABC_membrane 103 rltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgr. 198
                   r+++d+++l++ l + l + + + + +   ++ +  + + +++   +++++ ++v  ++++   +lk+ ++ + +++++++  slsg  +++a ++ 
    KKY16298.1 676 RFSTDIYSLDSDLIDYLRMTMDNAFRLALRIVGIGSIMPIFAIPAAFVCLIGYIVGEMYTRAQLSLKQLHSASQSPVFAHISVSLSGQSVIRARAGv 772
                   *********************************************************************************************8762 PP

                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHH CS
  ABC_membrane 199 eeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflsl 266
                    ++f++    +l+++ +a+  + ++n+++ +++++++ ++ ++a +++++    g +s + + + ls 
    KKY16298.1 773 ADRFQQILAMKLRDFARAAEARFNCNRWVCVRADCATATVSLCAGLIAISRA--GSVSASLVGFSLSN 838
                   5789999999*******************************99966665555..77777775555554 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   9.9e-05     0.033      12      48 ..     311     345 ..     303     352 .. 0.82
   2 !   11.2   0.0   0.00054      0.18     136     183 ..     420     463 ..     363     499 .. 0.77
   3 !   13.9   0.6   8.5e-05     0.028     135     208 ..    1041    1132 ..     916    1137 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.9e-05
                 TEECEEEEEETTSS.EEEEEESTTSSHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  12 syagktvilpfsks.ftaivGpNGSGKsnlldAilFvL 48 
                 s++ +++++ f+++ +++ivGp GSGK+ ll A+   L
  KKY16298.1 311 SFKLQSIDVTFTENaLNVIVGPSGSGKTTLLLAL---L 345
                 6777888888876538**************9998...5 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00054
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaell 183
                 +LSgG+++ va+a       ++p +l llD+i +aLD+   +++ ++ 
  KKY16298.1 420 ALSGGQRQRVAVAR----AIYSPCSLLLLDDIFSALDAPTAERLFHRC 463
                 79*****9998764....4699****************9999987765 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 8.5e-05
                  T......................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCE CS
                  x......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  135 e......................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadkl 208 
                                         ++S G+++++ la  +A    +++ +++lDe  a  D++  + + ell+++ k + +i i++r + + + d +
  KKY16298.1 1041 GtqpfkqsiphitlqtqisekgeNFSPGQRQVLGLARAIA----RRSKVVILDEATASVDDETDATIQELLRKEFKGSTLIAIAHRLKSVVDYDMI 1132
                  044555555555555555555559999***9999886654....677799***********************************98887766665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   4.4e-07   0.00015       9      39 ..     311     344 ..     310     349 .. 0.86
   2 !    8.3   0.1     0.009         3      23      35 ..     928     940 ..     917     944 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 4.4e-07
      AAA_23   9 sfrdqeidF...skgltlItGpNGaGKTTildAi 39 
                 sf+ q+id    ++ l++I+Gp G+GKTT+l A+
  KKY16298.1 311 SFKLQSIDVtftENALNVIVGPSGSGKTTLLLAL 344
                 677777766669999***************9886 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.009
      AAA_23  23 lItGpNGaGKTTi 35 
                 +I+G +G+GKTT+
  KKY16298.1 928 AIIGRTGSGKTTL 940
                 7***********8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.5   7.2e-06    0.0024       1      20 [.     326     345 ..     326     381 .. 0.87
   2 ?    3.3   0.0      0.18        60     236     296 ..     420     478 ..     356     480 .. 0.73
   3 ?    5.9   0.0      0.03       9.8       3      22 ..     928     947 ..     927     993 .. 0.76
   4 ?    0.2   0.0       1.6   5.4e+02     236     265 ..    1064    1090 ..    1054    1095 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 7.2e-06
      AAA_21   1 lnvliGpNgsGKSnLLdald 20 
                 lnv++Gp gsGK++LL al 
  KKY16298.1 326 LNVIVGPSGSGKTTLLLALL 345
                 7*****************94 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.18
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll.ell..kelsrngaQviltT 296
                  lS G+++  a++ a+++ +   slll+D++ + L+    +rl+ + +  ++l++    +il+T
  KKY16298.1 420 ALSGGQRQRVAVARAIYSPC---SLLLLDDIFSALDAPTAERLFhRCFttDLLAD--RTLILVT 478
                 3599999999999999*999...*************9999999988887555554..7777776 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.03
      AAA_21   3 vliGpNgsGKSnLLdaldll 22 
                 ++iG+ gsGK++L   +  l
  KKY16298.1 928 AIIGRTGSGKTTLALSMLSL 947
                 79**********96655555 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 1.6
      AAA_21  236 elSdGtkrllalltallralkkgsllliDE 265 
                  ++S G++++l+l+ a++r+    +++++DE
  KKY16298.1 1064 NFSPGQRQVLGLARAIARRS---KVVILDE 1090
                  5799**************99...99****9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00048      0.16       9      29 ..     328     348 ..     322     374 .. 0.80
   2 !   10.7   0.0    0.0015      0.49       8      30 ..     927     949 ..     922     980 .. 0.82
   3 ?    1.9   0.0      0.76   2.5e+02      82     112 ..    1075    1106 ..     999    1124 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00048
      AAA_22   9 vvtGesGtGKTtllrrlleql 29 
                 v++G+sG+GKTtll  ll ++
  KKY16298.1 328 VIVGPSGSGKTTLLLALLGEA 348
                 89************9988765 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0015
      AAA_22   8 lvvtGesGtGKTtllrrlleqld 30 
                 ++++G +G+GKTtl+  +l+  +
  KKY16298.1 927 VAIIGRTGSGKTTLALSMLSLTH 949
                 689************99888764 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.76
      AAA_22   82 leqalraravielliiDEaqh.lr..seealeeL 112 
                  l++a+ +r+  +++i+DEa   ++  +++ ++eL
  KKY16298.1 1075 LARAIARRS--KVVILDEATAsVDdeTDATIQEL 1106
                  344444554..5*******987744323333333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.9e-06   0.00095      91     132 ..     315     357 ..     298     369 .. 0.82
   2 ?    7.0   0.0     0.016       5.2      88     122 ..     912     947 ..     896     958 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.9e-06
                  HHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S---- CS
  RsgA_GTPase  91 eelkellkd.ktsvlvGqSGvGKStLinallpelelktgevse 132
                  +++   +++  + v+vG+SG GK+tL+ all+e+ l+tg+v  
   KKY16298.1 315 QSIDVTFTEnALNVIVGPSGSGKTTLLLALLGEAILETGSVTC 357
                  5555555554899**************************9975 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.016
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallpe 122
                  + +++++  +k  + ++++G +G GK+tL  ++l+ 
   KKY16298.1 912 DVVSDVSFSVKAgQRVAIIGRTGSGKTTLALSMLSL 947
                  5667777777776999*************8777665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   4.8e-05     0.016      17      41 ..     319     343 ..     310     348 .. 0.73
   2 !   11.1   0.2   0.00077      0.26      16      38 ..     918     940 ..     913     948 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.8e-05
      AAA_29  17 ieidlkgatlltGpsGsGKSTllDA 41 
                 ++++++   +++GpsGsGK+Tll A
  KKY16298.1 319 VTFTENALNVIVGPSGSGKTTLLLA 343
                 3444344789************955 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00077
      AAA_29  16 tieidlkg.atlltGpsGsGKSTl 38 
                 +++++  g  + ++G++GsGK+Tl
  KKY16298.1 918 SFSVKA-GqRVAIIGRTGSGKTTL 940
                 455664.4489************9 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00049      0.16      41      78 ..     319     355 ..     297     379 .. 0.75
   2 !    9.2   0.0    0.0029      0.95      44      67 ..     921     944 ..     894     975 .. 0.83
   3 ?    1.2   0.1      0.78   2.6e+02     107     144 ..    1081    1117 ..    1066    1133 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00049
   IstB_IS21  41 lsfiekkenivllGpsGvGKshlaialgveavraglsv 78 
                   f+e++ n v++GpsG GK+ l  al  ea+ +  sv
  KKY16298.1 319 VTFTENALN-VIVGPSGSGKTTLLLALLGEAILETGSV 355
                 456666666.578*************988887655554 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0029
   IstB_IS21  44 iekkenivllGpsGvGKshlaial 67 
                 +++ + ++++G +G GK+ la ++
  KKY16298.1 921 VKAGQRVAIIGRTGSGKTTLALSM 944
                 678899***************986 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.78
   IstB_IS21  107 lkvdllilDdlgllpldqaeaellfeviekryerrsii 144 
                   +++++ilD+  +  +d++  +++ e++ k ++ +++i
  KKY16298.1 1081 RRSKVVILDEA-TASVDDETDATIQELLRKEFKGSTLI 1117
                  46799****96.67899999999999999998654433 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00041      0.14      31      54 ..     322     345 ..     314     360 .. 0.86
   2 !   10.8   0.0    0.0008      0.26      31      54 ..     922     945 ..     897     957 .. 0.87
   3 ?   -1.5   0.0       4.9   1.6e+03     127     156 ..    1069    1096 ..    1037    1122 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00041
      AAA_25  31 pagelallaGapgtGKttlaldla 54 
                  +++l++++G++g+GKttl+l l 
  KKY16298.1 322 TENALNVIVGPSGSGKTTLLLALL 345
                 57899****************986 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0008
      AAA_25  31 pagelallaGapgtGKttlaldla 54 
                  ag  ++++G++g+GKttlal++ 
  KKY16298.1 922 KAGQRVAIIGRTGSGKTTLALSML 945
                 689999***************985 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 4.9
      AAA_25  127 tadvdaleaaieevegvrlvviDplsralg 156 
                  +++v  l++ai ++   ++v++D  ++ ++
  KKY16298.1 1069 QRQVLGLARAIARR--SKVVILDEATASVD 1096
                  45566788888884..69999998877654 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0026      0.85       6      23 ..     328     346 ..     324     445 .. 0.90
   2 ?   -1.4   0.0         5   1.6e+03      99     118 ..     637     657 ..     628     662 .. 0.83
   3 !   10.9   0.0   0.00086      0.28       2      22 ..     924     944 ..     923     965 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0026
      AAA_24   6 liyGpsgiGKTtlakel.g 23 
                 +i+Gpsg+GKTtl++ l g
  KKY16298.1 328 VIVGPSGSGKTTLLLALlG 346
                 79***********998852 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 5
      AAA_24  99 gdgkG.ygelaeefrrllkkl 118
                 ++++G ++++++ +++l++ +
  KKY16298.1 637 SFQRGgWQAAKAMHWKLINSV 657
                 567888************986 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00086
      AAA_24   2 klkiliyGpsgiGKTtlakel 22 
                 +++++i+G  g+GKTtla+++
  KKY16298.1 924 GQRVAIIGRTGSGKTTLALSM 944
                 689***************998 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00052      0.17     127     152 ..     322     347 ..     282     356 .. 0.74
   2 !    9.7   0.0    0.0012      0.39     122     161 ..     917     956 ..     892     969 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00052
       T2SSE 127 rerglilvsGgTgsGKttllyallke 152
                 +e+ l ++ G+ gsGKttll all e
  KKY16298.1 322 TENALNVIVGPSGSGKTTLLLALLGE 347
                 455556778*************9987 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0012
       T2SSE 122 lrkavrerglilvsGgTgsGKttllyallkeinksderiv 161
                 ++ +v++ + + + G TgsGKttl+ ++l+  + s+ ri+
  KKY16298.1 917 VSFSVKAGQRVAIIGRTGSGKTTLALSMLSLTHISHGRIL 956
                 55667777788899***********999998877777775 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0014      0.47      17      35 ..     328     346 ..     317     351 .. 0.88
   2 !   10.5   0.1   0.00088      0.29      14      35 ..     925     946 ..     919     956 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0014
     Pox_A32  17 alvGgsGsGktvyLlsLlr 35 
                 ++vG sGsGkt+ Ll+Ll 
  KKY16298.1 328 VIVGPSGSGKTTLLLALLG 346
                 79***************96 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00088
     Pox_A32  14 FrlalvGgsGsGktvyLlsLlr 35 
                  r+a++G +GsGkt+  ls+l+
  KKY16298.1 925 QRVAIIGRTGSGKTTLALSMLS 946
                 599*************999986 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   0.00012     0.039      16      47 ..     322     358 ..     314     384 .. 0.72
   2 ?    3.5   0.1      0.16        53      20      35 ..     926     941 ..     918     959 .. 0.74
   3 ?    0.1   0.0       1.7   5.6e+02      84     105 ..    1078    1099 ..    1014    1118 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.00012
      AAA_30  16 sgdrvavltGpAGtGKttalkal.reaweaag....g 47 
                 +++ + v++Gp G+GKtt+l al  ea+ + g     
  KKY16298.1 322 TENALNVIVGPSGSGKTTLLLALlGEAILETGsvtcP 358
                 45569*************9988766776666645553 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.16
      AAA_30  20 vavltGpAGtGKttal 35 
                  +++ G+ G+GKtt+ 
  KKY16298.1 926 RVAIIGRTGSGKTTLA 941
                 46789*********75 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.7
      AAA_30   84 arlepgtllivDEagmvdtkql 105 
                  a  ++++++i DEa     +++
  KKY16298.1 1078 AIARRSKVVILDEATASVDDET 1099
                  3344559******986544433 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0     0.006         2       3      33 ..     329     359 ..     327     380 .. 0.81
   2 ?    4.8   0.0      0.11        35       2      23 ..     928     949 ..     927    1010 .. 0.77
   3 ?    3.9   0.0       0.2        67      45      97 ..    1068    1115 ..    1025    1132 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.006
                 EESSTTSSHHHHHHHHHHHHTHEEEEEETTT CS
         AAA   3 lyGppGtGKTllakavakelgvefleisgse 33 
                 ++Gp G GKT+l  a+  e+  e  ++ +++
  KKY16298.1 329 IVGPSGSGKTTLLLALLGEAILETGSVTCPR 359
                 79**************999866666666655 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.11
                 EEESSTTSSHHHHHHHHHHHHT CS
         AAA   2 llyGppGtGKTllakavakelg 23 
                  ++G  G GKT+la ++ + ++
  KKY16298.1 928 AIIGRTGSGKTTLALSMLSLTH 949
                 5799**********99887764 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.2
                  HHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   45 kirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvk 97  
                    r+++  a++ a + +++++DE+ a + ++       + ++++ L +e++g +
  KKY16298.1 1068 GQRQVLGLARAIArRSKVVILDEATASVDDE------TDATIQELLRKEFKGST 1115
                  34666666666665559********999888......67777777777776654 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   0.00026     0.088      28      52 ..     328     353 ..     319     490 .. 0.75
   2 ?    7.1   1.9     0.019       6.4      22     160 ..     924    1108 ..     916    1119 .. 0.46

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00026
      AAA_16  28 llsGesGvGKsslvrell.ralekdg 52 
                 +++G+sG+GK++l+ +ll +a+ ++g
  KKY16298.1 328 VIVGPSGSGKTTLLLALLgEAILETG 353
                 699***********777636666663 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.019
      AAA_16   22 grpelvllsGesGvGKsslvrellralekd.ggiflrgkcdqlesaipysalaqalareellrqllde............aesaeleawrekleeal 105 
                  g  + v ++G  G+GK++l+ + l     + g i++ g   +        + +  l r + l+ + ++            +            ++ +
  KKY16298.1  924 G--QRVAIIGRTGSGKTTLALSMLSLTHIShGRILIDGVDIRD-------ITLHRL-R-SSLTIIPQDpilfsgdlqynlD----------PSQTLA 999 
                  4..4689*************77774222222223333333333.......111222.2.3333333333322111112211..........111111 PP

      AAA_16  106 a...............................................avpelagaea...........srllellkrllallsrderplvlvlDdl 144 
                  +                                               ++p+++ +             +r    l+r++   +r+++  v++lD++
  KKY16298.1 1000 KhenvisallacqkvkalskapssaslssiassaanghvtagtqpfkqSIPHITLQTQisekgenfspgQRQVLGLARAI---ARRSK--VVILDEA 1091
                  12222223333444444444444444444444444555555556555533333333225555556644444444444444...33344..7777777 PP

      AAA_16  145 q.wadeaslqllaaLlr 160 
                     +d+++ + +++Llr
  KKY16298.1 1092 TaSVDDETDATIQELLR 1108
                  73444444444777776 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1    0.0051       1.7       4      20 ..     328     344 ..     325     352 .. 0.86
   2 !    8.8   0.1    0.0041       1.4       2      20 ..     926     944 ..     925     952 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0051
                 EEEC-TTTCHHHHHHHH CS
       NACHT   4 ilqGeaGsGKTtLlqkl 20 
                 ++ G++GsGKTtLl  l
  KKY16298.1 328 VIVGPSGSGKTTLLLAL 344
                 799**********9766 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0041
                 CEEEEC-TTTCHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqkl 20 
                  v++ G+ GsGKTtL+ ++
  KKY16298.1 926 RVAIIGRTGSGKTTLALSM 944
                 689************9766 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0067       2.2       3      23 ..     328     348 ..     327     367 .. 0.85
   2 !    7.9   0.0    0.0091         3       1      20 [.     926     945 ..     926     965 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0067
                 EEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgek 23 
                 +ivG + +GK+tL+ al+ge+
  KKY16298.1 328 VIVGPSGSGKTTLLLALLGEA 348
                 69****************983 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0091
                 EEEEEESTTSSHHHHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinalt 20 
                 +vai+Gr+ +GK+tL  +++
  KKY16298.1 926 RVAIIGRTGSGKTTLALSML 945
                 69*************76665 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.6      0.03       9.9      21      85 ..     409     460 ..     402     464 .. 0.72
   2 !    8.9   0.0    0.0052       1.7      62      89 ..    1081    1108 ..    1066    1109 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.03
     SbcCD_C  21 gkekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatll 85 
                 g ++e+ ++ ++lSGG++q +   a+   ++a ys        ++l++LD+ Fs lD+ ++++l+
  KKY16298.1 409 GDSTEVGENGTALSGGQRQRV---AV---ARAIYSP-------CSLLLLDDIFSALDAPTAERLF 460
                 555666677777777777432...22...2445555.......99**************999987 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0052
     SbcCD_C   62 palrlvfLDEAFsklDeesiatllelle 89  
                  ++ ++v+LDEA +++D+e+ at+ ell+
  KKY16298.1 1081 RRSKVVILDEATASVDDETDATIQELLR 1108
                  45689**************999999987 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0068       2.2      17      39 ..     322     344 ..     306     356 .. 0.77
   2 !    8.4   0.1    0.0039       1.3      20      39 ..     925     944 ..     916     956 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0068
                 HH-SEEEEE--TTSSTTHHHHHH CS
        PhoH  17 kkndivfaiGpaGtGKtylaval 39 
                 ++n + +++Gp+G+GKt l +al
  KKY16298.1 322 TENALNVIVGPSGSGKTTLLLAL 344
                 48899************987764 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0039
                 SEEEEE--TTSSTTHHHHHH CS
        PhoH  20 divfaiGpaGtGKtylaval 39 
                 + v +iG++G+GKt la+++
  KKY16298.1 925 QRVAIIGRTGSGKTTLALSM 944
                 56899************986 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1    0.0016      0.53       3      20 ..     328     345 ..     326     354 .. 0.85
   2 ?    6.2   0.5     0.033        11       3      20 ..     928     945 ..     927    1112 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0016
      AAA_33   3 llvGlpGsGKstlaerll 20 
                 ++vG++GsGK+tl+  ll
  KKY16298.1 328 VIVGPSGSGKTTLLLALL 345
                 78***********98776 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.033
      AAA_33   3 llvGlpGsGKstlaerll 20 
                  ++G  GsGK+tla ++l
  KKY16298.1 928 AIIGRTGSGKTTLALSML 945
                 6799**********8887 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0      0.01       3.3       4      27 ..     326     349 ..     323     386 .. 0.86
   2 ?    5.4   0.0     0.051        17       5     112 ..     927    1032 ..     923    1049 .. 0.68
   3 ?   -0.3   0.0       3.1     1e+03      60      88 ..    1079    1108 ..    1046    1152 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.01
      AAA_14   4 ilvitGaRrvGKTtllkqlikell 27 
                 + vi+G+  +GKTtll  l+ e +
  KKY16298.1 326 LNVIVGPSGSGKTTLLLALLGEAI 349
                 679*************99987766 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.051
      AAA_14    5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelilek.lkeekktylflDEiqevpewekalkslvdegknldvivtGS 100 
                  ++i G   +GKTtl+  +++   ++    + i+  d rd +l   ++ l++i +  +  +++    lD  q + + e+++  l+  + +++ +    
  KKY16298.1  927 VAIIGRTGSGKTTLALSMLSLTHIS-HGRILIDGVDIRDITLHRLRSSLTIIPQDpILFSGDLQYNLDPSQTLAKHENVISALLACQ-KVKALSKAP 1021
                  7899999********9999655544.4555566666677666555556677777653335777788899999988888888888876.667776666 PP

      AAA_14  101 nskllskeiats 112 
                  +s  ls+ ia+s
  KKY16298.1 1022 SSASLSS-IASS 1032
                  6666665.4444 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 3.1
      AAA_14   60 lkeekktylflDEiqev..pewekalkslvd 88  
                  +  ++ ++++lDE+  +  +e   ++++l++
  KKY16298.1 1079 IA-RRSKVVILDEATASvdDETDATIQELLR 1108
                  33.47899*****988755344444444444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   0.00023     0.077      14      43 ..     314     344 ..     312     348 .. 0.92
   2 ?    2.1   0.0      0.38   1.2e+02      27      46 ..     928     947 ..     917    1119 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00023
      AAA_15  14 lkdveidlsee.ltvliGkNnsGKSsileal 43 
                 l+++++ + e+ l+v++G+ +sGK+++l al
  KKY16298.1 314 LQSIDVTFTENaLNVIVGPSGSGKTTLLLAL 344
                 788999999999****************998 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.38
      AAA_15  27 vliGkNnsGKSsilealdlF 46 
                  +iG+ +sGK++++  +  +
  KKY16298.1 928 AIIGRTGSGKTTLALSMLSL 947
                 79**********98776555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0066       2.2       2      18 ..     328     344 ..     328     410 .. 0.69
   2 ?    6.2   0.0     0.045        15       1      25 [.     927     959 ..     927    1011 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0066
      AAA_18   2 lltGtpGvGKttlakeL 18 
                 ++ G++G+GKttl  +L
  KKY16298.1 328 VIVGPSGSGKTTLLLAL 344
                 589**********9998 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.045
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf........g 25 
                 +++ G  G+GKttla    +++++        g
  KKY16298.1 927 VAIIGRTGSGKTTLALSMLSLTHIshgrilidG 959
                 6899**********9776665544554444444 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.3      0.42   1.4e+02      28      49 ..     329     350 ..     316     356 .. 0.85
   2 !   14.8   0.2   6.7e-05     0.022      23      46 ..     924     947 ..     908     957 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.42
       DUF87  28 ilgsTGsGKSntvavLleelle 49 
                 i+g +GsGK+++   Ll e++ 
  KKY16298.1 329 IVGPSGSGKTTLLLALLGEAIL 350
                 8999********9999988874 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 6.7e-05
       DUF87  23 trHlAilgsTGsGKSntvavLlee 46 
                  +++Ai+g+TGsGK++++ ++l+ 
  KKY16298.1 924 GQRVAIIGRTGSGKTTLALSMLSL 947
                 689***************999875 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0049       1.6       8      42 ..     315     349 ..     310     388 .. 0.80
   2 ?    4.8   0.1     0.062        21      14      93 ..     921    1052 ..     914    1072 .. 0.73
   3 ?   -0.1   0.1       1.9   6.3e+02     216     236 ..    1081    1101 ..    1073    1109 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0049
      AAA_11   8 eaiksalseseitliqGPPGtgKTktivellsqll 42 
                 ++i  + +e+++ +i GP G+gKT+ +++ll +++
  KKY16298.1 315 QSIDVTFTENALNVIVGPSGSGKTTLLLALLGEAI 349
                 5666777889999*****************98876 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.062
      AAA_11   14 lseseitliqGPPGtgKTktivellsqll.............................................sr.....rk..seeeksakpriL 58  
                  ++  + + i G  G+gKT+  +++ls  +                                             s+     ++  s+  +++k + L
  KKY16298.1  921 VKAGQRVAIIGRTGSGKTTLALSMLSLTHishgrilidgvdirditlhrlrssltiipqdpilfsgdlqynldpSQtlakhENviSALLACQKVKAL 1017
                  5666678999****************99999999999999999888888888888887777777777665555511444332266778889999999 PP

      AAA_11   59 vCapSNaAvDellerllrglldsegekykpkivRv 93  
                    apS a+   +++  ++g +++  +  k +i  +
  KKY16298.1 1018 SKAPSSASLSSIASSAANGHVTAGTQPFKQSIPHI 1052
                  99999999988888877766666555555555555 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1.9
      AAA_11  216 kkfdvviIDEAaqavEpstli 236 
                  ++ +vvi DEA+ +v  +t  
  KKY16298.1 1081 RRSKVVILDEATASVDDETDA 1101
                  56789********99888755 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0088       2.9       3      31 ..     328     356 ..     327     378 .. 0.80
   2 ?    6.4   0.0     0.031        10       1      36 [.     926     962 ..     926     974 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0088
                 EEESSTTSSHHHHHHCHCT-CCC-EEETT CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekst 31 
                 v+vG sg+GKt+ll  ++ + + e+ + t
  KKY16298.1 328 VIVGPSGSGKTTLLLALLGEAILETGSVT 356
                 79************999988776666555 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.031
                 EEEEESSTTSSHHHHHHCHCT.-CCC-EEETTTTEEE CS
         Roc   1 KvvlvGdsgvGKtsllkrfve.dkfsekekstigvdf 36 
                 +v ++G +g+GKt+l+ ++++  ++s+ +  + gvd+
  KKY16298.1 926 RVAIIGRTGSGKTTLALSMLSlTHISHGRILIDGVDI 962
                 589************9988772334455555555555 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.12        39      18      42 ..     328     352 ..     312     487 .. 0.85
   2 !    7.5   0.0    0.0097       3.2      13      33 ..     923     943 ..     914     970 .. 0.83
   3 ?    0.8   0.0       1.1   3.7e+02     120     147 ..    1081    1108 ..    1008    1115 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.12
                 EEEESTTSSHHHHHHHHHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  18 lvaaeTGsGKTlaflipvlqivyet 42 
                 ++ ++ GsGKT+  l  + ++++et
  KKY16298.1 328 VIVGPSGSGKTTLLLALLGEAILET 352
                 5889********9998888888886 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0097
                 TTCEEEEEESTTSSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
        DEAD  13 gggdvlvaaeTGsGKTlafli 33 
                  g+ v + ++TGsGKT+ +l 
  KKY16298.1 923 AGQRVAIIGRTGSGKTTLALS 943
                 68899**********998654 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 1.1
                  TTEEEEEEETHHHHHHTTTHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  120 sqvrflVlDEadrlldqgfsdfinriln 147 
                  ++ ++++lDEa    d++   +i+++l+
  KKY16298.1 1081 RRSKVVILDEATASVDDETDATIQELLR 1108
                  56789*******9999999999998876 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1     0.022       7.3       5      26 ..     328     349 ..     326     354 .. 0.89
   2 !    8.4   0.1    0.0051       1.7       2      20 ..     925     943 ..     924     952 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.022
   PduV-EutP   5 lliGkvgsGKttLtqalkgeel 26 
                 +++G++gsGKttL  al ge++
  KKY16298.1 328 VIVGPSGSGKTTLLLALLGEAI 349
                 579***********99998876 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0051
   PduV-EutP   2 kkilliGkvgsGKttLtqa 20 
                 +++ +iG++gsGKttL+ +
  KKY16298.1 925 QRVAIIGRTGSGKTTLALS 943
                 5899************754 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.014       4.7      43      63 ..     328     348 ..     300     353 .. 0.83
   2 !    7.1   0.1     0.009         3      40      59 ..     925     944 ..     908     950 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.014
                   EEE--TTSSHHHHHHHHHHHH CS
  FtsK_SpoIIIE  43 lvaGatgsGKStalntLilSl 63 
                   +++G +gsGK+t l +L+  +
    KKY16298.1 328 VIVGPSGSGKTTLLLALLGEA 348
                   79************9998655 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.009
                   .SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE  40 shllvaGatgsGKStalntL 59 
                   + + ++G+tgsGK+t   ++
    KKY16298.1 925 QRVAIIGRTGSGKTTLALSM 944
                   5799**********976555 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.025       8.4       6      55 ..     331     642 ..     326     714 .. 0.55
   2 ?    6.3   0.0     0.029       9.6       6      25 ..     931     950 ..     927    1020 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.025
                 SSTTSSHHHHHHHHH.HHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH................................................. CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................. RF
        CbiA   6 tkGGvGKTtlaanLa.ralarrglrVllvDaDpqannlaileglendiep................................................. 54 
                 + +G+GKTtl+++L+  a+ + g  + + D++  +   a l+ l+++ +                                                  
  KKY16298.1 331 GPSGSGKTTLLLALLgEAILETGSVTCPRDVGYASQT-AWLQNLSIRDNIlfysdynperyqrvvdaccllpdfddlehgdstevgengtalsggqrqr 428
                 679******9887751444456666666666665333.3244444444445555555555666666666666666666666666666666666666666 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        CbiA  55 ................................................................................................... 54 
                                                                                                                    
  KKY16298.1 429 vavaraiyspcsllllddifsaldaptaerlfhrcfttdlladrtlilvtqaqwiaakaqtavymdggkiehirrqspgsraqasplrlppvgptpang 527
                 666666666665555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        CbiA  55 ................................................................................................... 54 
                                                                                                                    
  KKY16298.1 528 vpeencsgamkvqkngptksrvtveniiagriprslfyqymvlfgghrfaiatiaacaltqfcffsitlwlsvwvgaynqhqavnvgfyigiyacimgs 626
                 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 PP

                 ...............C CS
                 ...............x RF
        CbiA  55 ...............d 55 
                                +
  KKY16298.1 627 fhvmsalnqlsfqrgG 642
                 5555555555555551 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.029
                 SSTTSSHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
        CbiA   6 tkGGvGKTtlaanLaralar 25 
                 +  G+GKTtla++++ +   
  KKY16298.1 931 GRTGSGKTTLALSMLSLTHI 950
                 678**********9987655 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   0.00014     0.047       2      33 ..     328     359 ..     328     362 .. 0.92
   2 ?    0.6   0.1       1.5   5.1e+02       1      17 [.     927     943 ..     927     952 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.00014
                 EEEEBTTTTHHHHHHHHHTS--S---SSS--- CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilprgpnptTr 33 
                 ++vG   sGK+++l aLlge+il +g+  + r
  KKY16298.1 328 VIVGPSGSGKTTLLLALLGEAILETGSVTCPR 359
                 68************************998865 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.5
                 EEEEEBTTTTHHHHHHH CS
   Dynamin_N   1 iavvGsqSsGKSSvlna 17 
                 +a++G + sGK++++ +
  KKY16298.1 927 VAIIGRTGSGKTTLALS 943
                 79***********9755 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.4   0.00044      0.14       3      21 ..     327     345 ..     325     355 .. 0.86
   2 ?    4.7   0.1     0.063        21       4      22 ..     928     946 ..     925     959 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00044
                 EEEEESTTCCHHHHHHHHH CS
        cobW   3 tvltGflGsGKTtLlnhll 21 
                  v++G+ GsGKTtLl +ll
  KKY16298.1 327 NVIVGPSGSGKTTLLLALL 345
                 689************9998 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.063
                 EEEESTTCCHHHHHHHHHC CS
        cobW   4 vltGflGsGKTtLlnhlle 22 
                  + G  GsGKTtL  ++l+
  KKY16298.1 928 AIIGRTGSGKTTLALSMLS 946
                 688999*******988874 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.2    0.0043       1.4       3      20 ..     328     345 ..     326     367 .. 0.82
   2 ?    5.6   0.1     0.051        17       1      17 [.     926     942 ..     926     965 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0043
      AAA_28   3 vitGgestGKTtlleaLa 20 
                 vi+G++++GKTtll aL 
  KKY16298.1 328 VIVGPSGSGKTTLLLALL 345
                 8*************8885 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.051
      AAA_28   1 kivitGgestGKTtlle 17 
                 +++i+G  ++GKTtl+ 
  KKY16298.1 926 RVAIIGRTGSGKTTLAL 942
                 79*************84 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0      0.04        13      29      54 ..     320     345 ..     296     357 .. 0.77
   2 !    7.9   0.1     0.006         2      29      55 ..     920     946 ..     914     955 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.04
       AAA_7  29 llknkkpvllvGptGtGKtviikdll 54 
                  ++++   ++vGp+G+GKt+++  ll
  KKY16298.1 320 TFTENALNVIVGPSGSGKTTLLLALL 345
                 5556666679**********987765 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.006
       AAA_7  29 llknkkpvllvGptGtGKtviikdllk 55 
                  +k+++ v ++G tG+GKt+++ ++l+
  KKY16298.1 920 SVKAGQRVAIIGRTGSGKTTLALSMLS 946
                 689999**************9988775 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0      0.12        40      22      45 ..     322     345 ..     287     355 .. 0.79
   2 !    8.9   0.0    0.0041       1.3      22      74 ..     922     970 ..     898    1121 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.12
                 .TTSEEEEEESTTSTHHHHHHHHH CS
      ResIII  22 krdkrglikmaTGtGKTlvaakli 45 
                 +++  ++i+ + G+GKT ++++l 
  KKY16298.1 322 TENALNVIVGPSGSGKTTLLLALL 345
                 456667899**********98775 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0041
                 .TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHG CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleef 74 
                 k  +r+ i   TG+GKT +a+++    + +++     +l+++ ++ + tl+++
  KKY16298.1 922 KAGQRVAIIGRTGSGKTTLALSMLSLTHISHG----RILIDGVDIRDITLHRL 970
                 5567899999**********999988888765....35666666666666555 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0034       1.1      19      40 ..     323     344 ..     314     354 .. 0.85
   2 ?    3.6   0.0      0.16        53      24      44 ..     928     948 ..     922    1108 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0034
    ATPase_2  19 pneiyfiYGpegsGKtaLlkei 40 
                 +n   +i Gp gsGKt+Ll  +
  KKY16298.1 323 ENALNVIVGPSGSGKTTLLLAL 344
                 57889*************9865 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.16
    ATPase_2  24 fiYGpegsGKtaLlkeiienl 44 
                  i G+ gsGKt+L   +++  
  KKY16298.1 928 AIIGRTGSGKTTLALSMLSLT 948
                 588**********99888776 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1     0.005       1.7       4      22 ..     329     347 ..     326     356 .. 0.86
   2 ?    5.3   0.1     0.052        17       2      21 ..     927     946 ..     926     955 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.005
        MobB   4 ivgksgsGKTtLleklipe 22 
                 ivg sgsGKTtLl  l+ e
  KKY16298.1 329 IVGPSGSGKTTLLLALLGE 347
                 89***********999876 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.052
        MobB   2 lgivgksgsGKTtLleklip 21 
                 ++i+g+ gsGKTtL   +++
  KKY16298.1 927 VAIIGRTGSGKTTLALSMLS 946
                 689***********887765 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.045        15      14      38 ..     323     347 ..     317     355 .. 0.85
   2 ?    8.0   0.1    0.0035       1.2      16      47 ..     925     956 ..     913     961 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.045
  TrwB_AAD_bind  14 etqhilivGttGsGKtqalekllra 38 
                    e++  +ivG  GsGKt+ l +ll +
     KKY16298.1 323 ENALNVIVGPSGSGKTTLLLALLGE 347
                    5566689***************965 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0035
  TrwB_AAD_bind  16 qhilivGttGsGKtqalekllrairargdrai 47 
                    q ++i+G tGsGKt+ + ++l        r++
     KKY16298.1 925 QRVAIIGRTGSGKTTLALSMLSLTHISHGRIL 956
                    6799****************987666655555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.047        15       3      19 ..     328     344 ..     327     363 .. 0.82
   2 ?    6.7   0.1      0.02       6.7       2      23 ..     927     948 ..     926     957 .. 0.86
   3 ?   -1.1   0.0       5.2   1.7e+03      61      78 ..    1078    1095 ..    1056    1126 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.047
                 EEE--SSSSHHHHHHHG CS
       AAA_5   3 lLvGppGtgKselaerl 19 
                 ++vGp+G+gK++l   l
  KKY16298.1 328 VIVGPSGSGKTTLLLAL 344
                 589*********98766 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.02
                 EEEE--SSSSHHHHHHHGGGGB CS
       AAA_5   2 vlLvGppGtgKselaerlaaal 23 
                 v ++G +G+gK++la ++++++
  KKY16298.1 927 VAIIGRTGSGKTTLALSMLSLT 948
                 5689************999887 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 5.2
                  ----G-SEEEEESGGG-- CS
       AAA_5   61 raaregeilvlDEverae 78  
                    ar++++++lDE +   
  KKY16298.1 1078 AIARRSKVVILDEATASV 1095
                  457799******988544 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.081        27      24      37 ..     328     341 ..     320     351 .. 0.85
   2 ?    8.1   0.2    0.0041       1.4      23      42 ..     927     946 ..     919     954 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.081
                 EEEESTTSSHHHHH CS
      NB-ARC  24 alvGmgGvGKttla 37 
                  +vG  G+GKttl+
  KKY16298.1 328 VIVGPSGSGKTTLL 341
                 599*********97 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0041
                 EEEEESTTSSHHHHHHHHCC CS
      NB-ARC  23 valvGmgGvGKttlakqiln 42 
                 va+ G+ G+GKttla ++l+
  KKY16298.1 927 VAIIGRTGSGKTTLALSMLS 946
                 89************987765 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       6.8   2.2e+03      17      34 ..     327     344 ..     317     352 .. 0.81
   2 ?   12.3   0.0    0.0003     0.099       6      37 ..     916     948 ..     913     990 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 6.8
                  EEEEESTTSSHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  17 tlipgafgvGktvisqsl 34 
                   +i+g +g Gkt+++ +l
   KKY16298.1 327 NVIVGPSGSGKTTLLLAL 344
                  579**********98665 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.0003
                  HHHS-EBTT-EEEEEESTTSSHHHHH.HHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
  ATP-synt_ab   6 DalfpivqGqrtlipgafgvGktvis.qslskq 37 
                  D+ f++  Gqr++i+g  g Gkt+++ ++ls  
   KKY16298.1 916 DVSFSVKAGQRVAIIGRTGSGKTTLAlSMLSLT 948
                  88899********************95555444 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.016       5.3      57     110 ..     328     382 ..     301     396 .. 0.81
   2 ?    4.3   0.0     0.073        24      52      76 ..     923     947 ..     916     962 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.016
                 EEEESTTSSHHHHHHHHHHHHH.HTT--EEEEESS----HHHHHHTT--GGG-EE CS
        RecA  57 eiyGpessGkttlalhaiaeaq.kkggvaafidaehaldpkyakklGvdidellv 110
                  i Gp  sGkttl l ++ ea  ++g v++  d+ +a ++++ ++l +  + l+ 
  KKY16298.1 328 VIVGPSGSGKTTLLLALLGEAIlETGSVTCPRDVGYASQTAWLQNLSIRDNILFY 382
                 589***************9986155666777899999999999999887665555 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.073
                 TTSEEEEEESTTSSHHHHHHHHHHH CS
        RecA  52 kGriieiyGpessGkttlalhaiae 76 
                  G+ + i G   sGkttlal++++ 
  KKY16298.1 923 AGQRVAIIGRTGSGKTTLALSMLSL 947
                 578899**************99865 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.051        17     246     264 ..     326     344 ..     321     348 .. 0.90
   2 ?    8.2   0.0    0.0027      0.91     322     399 ..    1064    1139 ..    1036    1145 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.051
                 EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 246 vtlIvGggfhGKsTLLeAl 264
                 + +IvG+   GK+TLL Al
  KKY16298.1 326 LNVIVGPSGSGKTTLLLAL 344
                 789*************998 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0027
                  S--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-G CS
  ABC_ATPase  322 dASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsg 399 
                  + S    q   +++a+ +++k++++DE t+ +     D+ +qel+ ke ++  +l+  +++l + ++  +i+v+gg +
  KKY16298.1 1064 NFSPGQRQVLGLARAIARRSKVVILDEATASVDDET-DATIQELLRKEFKG-STLIAIAHRLKSVVDYDMIIVMGGGK 1139
                  55666667778899***************9999877.********999977.779999****************9854 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2      0.19        64       1      14 [.     330     343 ..     330     358 .. 0.72
   2 ?    6.4   0.0     0.034        11       2      34 ..     931     960 ..     930     981 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.19
                 EE-TTSSHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqcek 14 
                 +G+ GsGK+t++  
  KKY16298.1 330 VGPSGSGKTTLLLA 343
                 79********9843 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.034
                 E-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHH CS
      AAA_17   2 GgPGsGKgtqceklvekygfthlsaGdllreea 34 
                 G  GsGK+t++      + +th+s G +l++ +
  KKY16298.1 931 GRTGSGKTTLA---LSMLSLTHISHGRILIDGV 960
                 778********...8899*********998765 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0056       1.9       7      31 ..     328     352 ..     322     366 .. 0.85
   2 ?    1.6   0.1      0.49   1.6e+02       4      21 ..     925     942 ..     922     955 .. 0.80
   3 ?   -0.8   0.0       2.7   8.9e+02     107     123 ..     999    1015 ..     994    1024 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0056
                 EEE-STTSSHHHHHHHHHHSS---B CS
       SRPRB   7 llvGlsdsGKTslftrLttdsvkkt 31 
                 ++vG+s sGKT+l+  L+ +++ +t
  KKY16298.1 328 VIVGPSGSGKTTLLLALLGEAILET 352
                 79************99998877666 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.49
                 -EEEEE-STTSSHHHHHH CS
       SRPRB   4 pavllvGlsdsGKTslft 21 
                 ++v ++G + sGKT+l  
  KKY16298.1 925 QRVAIIGRTGSGKTTLAL 942
                 6799**********9954 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 2.7
                  HHHTT---EEEEEE-TT CS
       SRPRB  107 eklkdavdiliACnKqe 123 
                  +k+++ ++ l+AC+K  
  KKY16298.1  999 AKHENVISALLACQKVK 1015
                  56789*********965 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.15        50      21      51 ..     326     358 ..     308     359 .. 0.73
   2 ?    6.0   0.0     0.035        12      19      42 ..     924     947 ..     898     955 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.15
                 EEEEEESTTSSHHHHHHHHHHHTT--..----T CS
        TsaE  21 vilLeGdLGaGKTtlvrglakalgve..evkSP 51 
                 + ++ G+ G+GKTtl  +l+ +  +e  +v+ P
  KKY16298.1 326 LNVIVGPSGSGKTTLLLALLGEAILEtgSVTCP 358
                 467889*********999887765554566655 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.035
                 TEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglaka 42 
                 g+ +++ G  G+GKTtl+ ++++ 
  KKY16298.1 924 GQRVAIIGRTGSGKTTLALSMLSL 947
                 56799************9887765 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.011       3.5       8      35 ..     328     355 ..     322     378 .. 0.81
   2 ?    2.1   0.0       0.3        98       7      31 ..     927     951 ..     924     973 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.011
                 EEEEBTTSSCCCCCCTTSSSS------- CS
      Septin   8 mvvGesglGkttlintlfetdlieeekl 35 
                 ++vG sg Gkttl+ +l+ + + e+ ++
  KKY16298.1 328 VIVGPSGSGKTTLLLALLGEAILETGSV 355
                 589**************99999887555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.3
                 EEEEEBTTSSCCCCCCTTSSSS--- CS
      Septin   7 lmvvGesglGkttlintlfetdlie 31 
                 + ++G+ g Gkttl  ++++ + i+
  KKY16298.1 927 VAIIGRTGSGKTTLALSMLSLTHIS 951
                 5689**********99998866655 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.043        14       1      16 [.     329     344 ..     329     354 .. 0.86
   2 ?    4.8   0.1     0.062        21       1      21 [.     929     949 ..     929     956 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.043
  ATP_bind_1   1 vvGpaGsGKttfvgal 16 
                 +vGp GsGKtt+  al
  KKY16298.1 329 IVGPSGSGKTTLLLAL 344
                 79*********98665 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.062
  ATP_bind_1   1 vvGpaGsGKttfvgalseile 21 
                 ++G  GsGKtt+  ++ ++++
  KKY16298.1 929 IIGRTGSGKTTLALSMLSLTH 949
                 79**********999887765 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.072        24       2      19 ..     328     345 ..     327     388 .. 0.77
   2 ?    3.1   0.0      0.37   1.2e+02       2      18 ..     928     944 ..     927     956 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.072
  RNA_helicase   2 wlyGpsgeGKStlakeLa 19 
                   +++Gpsg GK+tl   L 
    KKY16298.1 328 VIVGPSGSGKTTLLLALL 345
                   689*********987643 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.37
  RNA_helicase   2 wlyGpsgeGKStlakeL 18 
                    + G++g GK+tla ++
    KKY16298.1 928 AIIGRTGSGKTTLALSM 944
                   689**********9774 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1       0.1        35       3      20 ..     328     345 ..     327     355 .. 0.84
   2 ?    5.1   0.1     0.058        19       1      22 [.     926     947 ..     926     977 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.1
                 EEE--TTSSHHHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkkvl 20 
                 +i Gp+G+GKtTl+  +l
  KKY16298.1 328 VIVGPSGSGKTTLLLALL 345
                 588**********97665 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.058
                 EEEEE--TTSSHHHHHHHHHHH CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkvlel 22 
                 +v+i G+ G+GKtTl   +l+l
  KKY16298.1 926 RVAIIGRTGSGKTTLALSMLSL 947
                 58899**********9887654 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.15        49      16      46 ..     321     351 ..     314     356 .. 0.79
   2 ?    5.3   0.1     0.033        11      19      38 ..     924     943 ..     920     953 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.15
      ATPase  16 ipegrvvlitGepGtGKtifalqFlikgaek 46 
                 + e++   i+G +G+GKt++ l  l + + +
  KKY16298.1 321 FTENALNVIVGPSGSGKTTLLLALLGEAILE 351
                 56777889***********987776666655 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.033
      ATPase  19 grvvlitGepGtGKtifalq 38 
                 g+ v i G +G+GKt++al 
  KKY16298.1 924 GQRVAIIGRTGSGKTTLALS 943
                 78899************986 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.036        12       3      25 ..     326     348 ..     324     377 .. 0.83
   2 ?    2.8   0.1      0.17        57       5      23 ..     928     946 ..     925     957 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.036
     DUF2075   3 vvlVtGvaGtGKtvvllnllael 25 
                 + ++ G +G+GKt +ll+ll e+
  KKY16298.1 326 LNVIVGPSGSGKTTLLLALLGEA 348
                 56899**************9987 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.17
     DUF2075   5 lVtGvaGtGKtvvllnlla 23 
                  + G++G+GKt ++l++l 
  KKY16298.1 928 AIIGRTGSGKTTLALSMLS 946
                 577************9975 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.031        10       9      34 ..     323     348 ..     315     365 .. 0.76
   2 ?    2.4   0.7      0.52   1.7e+02      11      31 ..     925     945 ..     918    1119 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.031
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivall 34 
                 ++ + +++++ G+GKT++l + + ++
  KKY16298.1 323 ENALNVIVGPSGSGKTTLLLALLGEA 348
                 45566788999*******98877554 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.52
      AAA_19  11 kvllvtaGpGtGKTrvlkhiv 31 
                 + +++++  G+GKT++   ++
  KKY16298.1 925 QRVAIIGRTGSGKTTLALSML 945
                 568899999****99866555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                        54  (0.00301188); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              54  [number of targets reported over threshold]
# CPU time: 1.03u 0.30s 00:00:01.33 Elapsed: 00:00:00.47
# Mc/sec: 7500.54
//
Query:       KKY16299.1  [L=369]
Description: hypothetical protein UCRPC4_g05961 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-42  144.3   0.0    4.1e-42  143.8   0.0    1.2  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
    0.00028   20.8   0.0    0.00067   19.6   0.0    1.6  1  MobB             Molybdopterin guanine dinucleotide synthesis
  ------ inclusion threshold ------
       0.01   15.6   1.0       0.43   10.4   0.2    3.0  3  AAA_29           P-loop containing region of AAA domain
      0.035   14.0   0.0         11    5.8   0.0    2.3  2  RsgA_GTPase      RsgA GTPase
      0.042   14.1   0.0      0.088   13.1   0.0    1.5  1  AAA_22           AAA domain
      0.043   13.5   0.0      0.071   12.8   0.0    1.4  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.13   12.8   0.1       0.32   11.5   0.1    1.7  1  AAA_18           AAA domain
       0.16   11.9   0.1        0.3   11.0   0.1    1.5  1  NTPase_1         NTPase
       0.16   10.9   0.0       0.26   10.2   0.0    1.2  1  DUF463           YcjX-like family, DUF463


Domain annotation for each model (and alignments):
>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.8   0.0     2e-45   4.1e-42       1     172 [.       5     179 ..       5     184 .. 0.93

  Alignments for each domain:
  == domain 1  score: 143.8 bits;  conditional E-value: 2e-45
                 EEEEEEESTTCCHHHHHHHHH.CT--SS-EEEEESS-SSCHCCCCCCHCCCT..EEEETTTTECCHCTT-HHHHHHHHHHHHTT-SEEEEEECTTTTHH CS
        cobW   1 pvtvltGflGsGKTtLlnhll.enraglklavivNefgevsiDaellretgve.ivelenGciCctlredllkelealeereerldviliEttGlaePa 97 
                 pvt++tGflGsGKTtL+ +l+ +  ++++la++ Nefg++++D++l ++++ + + el nGciCc+l  +l  +l +l ++  ++d+i+iEt+G a Pa
  KKY16299.1   5 PVTIITGFLGSGKTTLILNLIpQLPKNYRLALLKNEFGDLAVDSQLASQQSISgVRELLNGCICCNLVGQLGDALLQLRNEV-KPDRIIIETSGSAFPA 102
                 79**********************************************996666***************************9.9*************** PP

                 HHHTT....SHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHHHHHHHHHHTT CS
        cobW  98 pvaft....eeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldeeallekleerlrqlnpe 172
                 ++a++    +++ + ++ ld+v+ v+D++n+ +  ++++ +a+ q +++dl+v+nK++l+de++  +++ +r+ +l+ +
  KKY16299.1 103 TLAMEvnrlAHSNSGSFVLDGVISVIDVENW-KGYDDTSYTAKMQAKYTDLIVFNKWELADERRF-DECLDRVGDLEVQ 179
                 **6666778888888****************.89****************************954.7898888887765 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   3.4e-07   0.00067       3      44 ..       8      48 ..       6      52 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.4e-07
        MobB  3 givgksgsGKTtLleklipelkarglrvgtiKhahhgfdvdk 44
                 i+g+ gsGKTtL+ +lip+l + ++r++++K +  ++ vd+
  KKY16299.1  8 IITGFLGSGKTTLILNLIPQLPK-NYRLALLKNEFGDLAVDS 48
                58899****************75.7********999988886 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00021      0.43      24      39 ..       6      21 ..       2      26 .. 0.91
   2 ?    2.1   0.0     0.084   1.7e+02       4      22 ..     128     146 ..     125     154 .. 0.76
   3 ?   -1.3   0.0      0.97   1.9e+03      35      50 ..     248     264 ..     224     267 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00021
      AAA_29 24 atlltGpsGsGKSTll 39
                +t++tG  GsGK+Tl+
  KKY16299.1  6 VTIITGFLGSGKTTLI 21
                589************8 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.084
      AAA_29   4 lqlvNWgtfdghtieidlk 22 
                 +++ NW  +d+++++ +++
  KKY16299.1 128 IDVENWKGYDDTSYTAKMQ 146
                 7899******987776655 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.97
      AAA_29  35 KSTl.lDAiqalLvpak 50 
                  ST+ lDA+  lL++a 
  KKY16299.1 248 TSTVdLDALEGLLLAAP 264
                 56666899999998875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0058        12     101     123 ..       6      28 ..       3      64 .. 0.84
   2 ?    5.8   0.0    0.0057        11      44      87 ..     146     188 ..     139     202 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0058
                  EEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpel 123
                  ++++ G  G GK+tLi +l+p+l
   KKY16299.1   6 VTIITGFLGSGKTTLILNLIPQL 28 
                  68999**************9985 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0057
                  HTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTH CS
  RsgA_GTPase  44 ekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktk 87 
                  +++ + +iv+nK +l++e++ ++e  +++ +l++++  v+++++
   KKY16299.1 146 QAKYTDLIVFNKWELADERR-FDECLDRVGDLEVQTAWVKSDKG 188
                  5566789*************.***********999998887755 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.4e-05     0.088       7      36 ..       6      35 ..       5      67 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.4e-05
      AAA_22  7 ilvvtGesGtGKTtllrrlleqldeeakae 36
                ++++tG  G+GKTtl+ +l  ql++ +  +
  KKY16299.1  6 VTIITGFLGSGKTTLILNLIPQLPKNYRLA 35
                589*****************9998766555 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.6e-05     0.071       1      21 [.       7      27 ..       7      70 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.6e-05
  Viral_helicase1  1 ivvhGvpGcGKStlirkllrt 21
                     +++ G+ G+GK+tli +l+ +
       KKY16299.1  7 TIITGFLGSGKTTLILNLIPQ 27
                     589***************977 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00016      0.32       2      42 ..       8      55 ..       8     136 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
      AAA_18  2 lltGtpGvGKttlakeLskrl.gf......gvnlrdvakenglllevd 42
                ++tG  G+GKttl  +L   l ++        + +d+a +++l   + 
  KKY16299.1  8 IITGFLGSGKTTLILNLIPQLpKNyrlallKNEFGDLAVDSQLASQQS 55
                79************9997666555566667666666666666665555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00015       0.3       3      26 ..       8      30 ..       6      35 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
                EEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1  3 fiTGppGvGKtTlvkkvlellkss 26
                +iTG  G+GKtTl+ +++ +l  +
  KKY16299.1  8 IITGFLGSGKTTLILNLIPQLP-K 30
                89**************999884.4 PP

>> DUF463  YcjX-like family, DUF463
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00013      0.26       5      41 ..       9      42 ..       7      60 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00013
      DUF463  5 vTGLsraGKtvfitsLvnqLlaaekkarlplfeaare 41
                +TG+ ++GKt++i  L+ qL    k+ rl+l++    
  KKY16299.1  9 ITGFLGSGKTTLILNLIPQLP---KNYRLALLKNEFG 42
                8*******************8...7778888776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 2250.90
//
Query:       KKY16300.1  [L=354]
Description: hypothetical protein UCRPC4_g05962 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-44  149.8   0.0      9e-44  149.3   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase
    0.00018   21.1   0.0    0.00033   20.3   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0021   17.9   0.0     0.0033   17.2   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.011   16.4   0.0      0.024   15.3   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
      0.017   15.9   0.0      0.034   14.9   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
      0.042   14.1   0.0       0.12   12.7   0.0    1.7  1  Mur_ligase_C     Mur ligase family, glutamate ligase domain
      0.044   14.0   0.0      0.075   13.2   0.0    1.4  1  Ribonuc_2-5A     Ribonuclease 2-5A
      0.053   13.1   0.0      0.086   12.5   0.0    1.2  1  Cons_hypoth95    Conserved hypothetical protein 95
       0.11   11.8   0.0       0.16   11.3   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.3   0.0   4.5e-47     9e-44       4     173 ..     140     319 ..     138     320 .. 0.91

  Alignments for each domain:
  == domain 1  score: 149.3 bits;  conditional E-value: 4.5e-47
  Methyltransf_16   4 ekeLkieedtgesigrkvWdaavvlvkylekklake..........lganelsklsvlELGsGtGlvGlavaellpeakviltDleellellkk 87 
                      +k L+++e+tg+si+ ++Wdaa+ + + l ++   +          l +  ++++++ ELGsG+G+vG+a+a+ l++++v+l+Dl+e++e+++k
       KKY16300.1 140 KKILTVWEETGNSIALHIWDAAIGVLQSLCHAHDCGakdieprlccLINGFQRPTRIFELGSGCGVVGIALASILNSVQVTLSDLPEAMEIMEK 233
                      5679*******************9999998866544889*****985455668899************************************** PP

  Methyltransf_16  88 nielnknalkskvkvevLdWgeeleedllekeevDlilaaDcvYledslelLvkvLkellkkesk..vlvaykkrreaekkFfkllek 173
                      n+ ++k   +s+   +vLdW+ +l +dl   ++vD+i+++Dc+Y++d+++ LvkvL+    ++++  + va+k+r+e+e+ Ff+l+++
       KKY16300.1 234 NMTAAKLERNSSLCRTVLDWDSDLSSDLS--RNVDIIIVSDCTYNADAIPSLVKVLRSFAVASPNivIAVAMKRRHESEEVFFDLMTQ 319
                      ****999999**************99995..679***********************999888886678899************9986 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.6e-07   0.00033      33     102 ..     194     269 ..     183     272 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.6e-07
                 SEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC........EEEEE-STTTTSTTS-EEEEE CS
         MTS  33 gkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle........vevvasdvleeveekkfdliv 102
                  ++  lG+G Gv+g+ala+  ++++vtl d   +A+e+ ++n++a kle        v    sd+ ++++ +++d+i+
  KKY16300.1 194 TRIFELGSGCGVVGIALASILNSVQVTLSDL-PEAMEIMEKNMTAAKLErnsslcrtVLDWDSDLSSDLS-RNVDIII 269
                 46999*************************8.579**********9999877764321122467777777.8888887 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.6e-06    0.0033       5     110 ..     194     302 ..     190     336 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.6e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeq..gdiee.leklledekfDl.ilsnevl..naladpd 91 
                      +r+ +lG+G G  +++la+ l    +v++ D  +ea e +++n    +l+ n ++++   d+ + l+++l+ +++D+ i+s+++   +a++++ 
       KKY16300.1 194 TRIFELGSGCGVVGIALASIL-NSVQVTLSDL-PEAMEIMEKNMTAAKLErNSSLCRtvLDWDSdLSSDLS-RNVDIiIVSDCTYnaDAIPSLV 284
                      7899**************655.56*******8.8899*************999999888999998986677.89**94567777799999999* PP

  Methyltransf_31  92 kileeiervlkpggillie 110
                      k+l++ + v +p+ +++++
       KKY16300.1 285 KVLRS-FAVASPNIVIAVA 302
                      **998.6677777666665 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   1.2e-05     0.024       1      87 [.     196     288 ..     196     293 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.2e-05
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBS.....SSTTTEEEEEEEST.GGGSSHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlp.....fedgsfDlvvssga.lhhlsdedlekalk 87 
                      + +lG G G + +ala  l++ +vt  D+ e+m e++++++ +++l + + ++  + d++       ++ +D++++s + ++    + l k+l+
       KKY16300.1 196 IFELGSGCGVVGIALASILNSVQVTLSDLPEAM-EIMEKNMTAAKLeRNSSLCRTVLDWDsdlssDLSRNVDIIIVSDCtYNADAIPSLVKVLR 288
                      689**************9999*******96665.999999999888855555555544432222357779999999888554444455555555 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.7e-05     0.034       2      90 ..     198     288 ..     197     296 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.7e-05
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsai....edakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnir 90 
                      e+G+G G +  al+  l  +++t +D+ +++     + +++kl +++ ++ ++++++ + ++dl+    +D++++s++  + + i ++++ +r
       KKY16300.1 198 ELGSGCGVVGIALASILNSVQVTLSDLPEAMEimekNMTAAKLERNSSLCRTVLDWDSDLSSDLSR--NVDIIIVSDCTYNADAIPSLVKVLR 288
                      99***************************9988888888999999999999999999777766655..9******999888766666665554 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.9e-05      0.12      11      72 ..     264     325 ..     260     332 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.9e-05
                   TTTEEEEEET--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHS CS
  Mur_ligase_C  11 adgvtvidDyahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasala 72 
                   + ++ ++ D   n d++  ++k+lr +a ++  i+++ +++ + e ++ f+d++ + +++ +
    KKY16300.1 264 NVDIIIVSDCTYNADAIPSLVKVLRSFAVASPNIVIAVAMKRRHESEEVFFDLMTQYFQQTK 325
                   557788899999***************99***************************999865 PP

>> Ribonuc_2-5A  Ribonuclease 2-5A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.7e-05     0.075       9      71 ..     222     289 ..     216     323 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.7e-05
  Ribonuc_2-5A   9 SdrfeiekrdpesellkkLeseasev.vks.dWtkkldkelvdslg....kyrkYkgdsvrdLLRaiRN 71 
                   Sd  e  +  +++ +  kLe+++s + +   dW++ l+++l +++     +  +Y+ d +  L++++R 
    KKY16300.1 222 SDLPEAMEIMEKNMTAAKLERNSSLCrT-VlDWDSDLSSDLSRNVDiiivSDCTYNADAIPSLVKVLRS 289
                   4444444444478899*****9999944.45************99755557779**************6 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.3e-05     0.086      43     161 ..     194     312 ..     186     329 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.3e-05
                    -EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--T...TTEEEEES-HHHHCTS--SS-EEEEE.EE--SSSTTCH.HHHHH CS
  Cons_hypoth95  43 arvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelklee...etaelkedaleallklakkkeefdiv.flDPPyakellieevle 134
                     r+ +l +G G++g+  +S   +  v +   +ea++i+++n+ + kle     ++++  d  ++l++    ++++di+   D  y++++ i  +++
     KKY16300.1 194 TRIFELGSGCGVVGIALASILNSVQVTLSDLPEAMEIMEKNMTAAKLERnssLCRTVL-DWDSDLSSDL--SRNVDIIiVSDCTYNADA-IPSLVK 285
                    6788999********9999999999999999***************998553333333.3334444443..44577651579*****97.6***** PP

                    HHHHTT-EEEEEEEEEEEECCSSS--. CS
  Cons_hypoth95 135 lleekkllkenalvvvetekekelpes 161
                     l++  + ++n ++ v  ++++e  e 
     KKY16300.1 286 VLRSFAVASPNIVIAVAMKRRHESEEV 312
                    ***999**********99999887664 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     8e-05      0.16     160     247 ..     191     288 ..     182     327 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8e-05
        PrmA 160 kegeevlDvGtGSGiLaia.aakLgakkvvavDiDevAvkvakeNaelNkveaklev...al..seellk..eekadviv...aNILaevlielaedik 247
                 ++ ++++ +G G G+  ia a+ L+  +v+  D+ + A+++ ++N++  k+e++ ++    l   ++l +  ++++d+i+   +   a+++ +l++ + 
  KKY16300.1 191 QRPTRIFELGSGCGVVGIAlASILNSVQVTLSDL-PEAMEIMEKNMTAAKLERNSSLcrtVLdwDSDLSSdlSRNVDIIIvsdCTYNADAIPSLVKVLR 288
                 667899*************566788999999998.679***********99998876332122223333245678998873333344555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 2206.84
//
Query:       KKY16301.1  [L=824]
Description: putative beta-glucosidase 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-38  130.7   0.0    1.4e-37  129.8   0.0    1.4  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    2.3e-37  128.9   0.0    7.8e-37  127.2   0.0    1.9  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
    2.2e-19   69.3   0.0    4.5e-19   68.3   0.0    1.6  1  Fn3-like         Fibronectin type III-like domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.8   0.0   2.3e-41   1.4e-37      86     318 ..     137     362 ..     113     363 .. 0.86

  Alignments for each domain:
  == domain 1  score: 129.8 bits;  conditional E-value: 2.3e-41
                    ---S-HHHHHHHT-HHHHHHHHHHHHHHHHHHT--EE---B--.---STTSSSGGGSS-SSHHHHHHHHHHHHHHHHHTT-EEEEEEETTGTT-SS CS
  Glyco_hydro_3  86 tlfPsalalaatssldlikelgriiakelralgididfaPvvd.vnrdprngigvrsFsedpelvaalaaamvkGlqgagvaatvKHFpghGdgav 180
                     +  s +  +a+++++l++  ++ +++e    g+++ ++Pvv  ++r  r g++ ++Fs+dp+l + l + +v+Glq+ +v+a+vKHF+g  + + 
     KKY16301.1 137 NSYASGIHVGAAWNRNLAYSRAQFMGAEFKRKGVNVALGPVVGpLGRIARGGRNWEGFSNDPYLSGILTGDTVRGLQE-SVIACVKHFIGNEQETL 231
                    556677889*********************************6599999999************************97.79*********844332 PP

                    .......ETTTSEEB----HHHHHHTTHHHHHHHHHTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS---SEEEES-TTSHHHHCCS-HHH CS
  Glyco_hydro_3 181 .......dshkelptvdhseeelrevdlvpfqaaieagvdsVMtaHvqfpaldgtpatgskklltdvLRkelGFdGvvvsDalamkeiadrggkee 269
                           ++  + +  + + + ++e +l pfq ai+ag++sVM +   ++ ++++    ++k+l ++L+ elGF+G+vvsD++           ++
     KKY16301.1 232 rnppiliETYNQSVSFNVDDKTMHELYLWPFQDAIKAGAGSVMCS---YNRINNSYGCQNSKALNGLLKGELGFQGFVVSDWS----------GQH 314
                    22222224555666778899*************************...*******8888888888******************..........455 PP

                    HHHHHHHHT-SBEES-S---SGHHHHHHHHHTTSS-HHHHHHHHHHHHH CS
  Glyco_hydro_3 270 avvlaLkAGvDilLvpeertseikalkkavkeGeltearidesvrrvlr 318
                      v++ +AG+D+++ +++ +    +l  av +G+l+++r+d+ ++r+l 
     KKY16301.1 315 SGVASADAGLDMAMPDSDFW-MDGNLTLAVTNGSLAQSRLDDMATRILA 362
                    677888*************9.7789**********************95 PP

>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   0.0   1.3e-40   7.8e-37       2     204 .]     408     691 ..     407     691 .. 0.89

  Alignments for each domain:
  == domain 1  score: 127.2 bits;  conditional E-value: 1.3e-40
                      EEEEEGSS--S-S-STEEEEEESGGGS........................................................SS-SS-BSSS- CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................xxxxxxxxxxx RF
  Glyco_hydro_3_C   2 VLLkNennlLPLkkklkkiaviGpnad........................................................etlklGggsgt 39 
                      VL+kN nn+LPL k  k + ++G +                                                          +t+ +G gsg+
       KKY16301.1 408 VLVKNVNNALPL-KAPKFLSLFGYDGIaqawntkdtaawslwslgeanmlnypngtivdgttlqyiflssvdpietgpgvalnGTMITGSGSGA 500
                      9***********.66789*****77667899*************************************************************** PP

                      ---S---HHHHHHHHHHH........-HHHHHHHHHHHTSEEEEEEEES...SB-TTSCSGHHSSTTHHHHHHHHHHTTSSEEEEEEESSGG-- CS
                      xxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C  40 vtvsylvsplegirerles......eegideaveaakeaDvavvvvgedpeiegEgvDrtdlalpeaqdelikavaaanknvvvvlqsggpvav 127
                       t+sy++ p+++ ++++ +       +  ++   + k ++++vv+++e+   ++Eg+ r+ +a    +d l+++vaa+++n+ vv++++g+  v
       KKY16301.1 501 NTPSYIDAPFDAFQRQAYEdntflaWDFASQDPYVNKGSEACVVFINEQ---ASEGWERPYVADE-YSDILVENVAAQCNNTMVVIHNAGVRLV 590
                      *****************77899*997788899999**************...*******987766.**************************** PP

                      TTT.GTTTEEEEEE-S--GCCHHHHHHHHHTTSS---B--SS-EESSSGGG..................................S-----S.. CS
                      xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx...xx..................xxxxxxxx.. RF
  Glyco_hydro_3_C 128 epw.keenvkAilaawlpGqegGtaiadvLfGdvnPsGkLpvtfpksledlpd..dyyeek...dt..................ykfegtpl.. 195
                      ++w +++n++A+++a+lpGq++G+a+++v++G+++PsG+Lp+t++k+++d+ +  + + ++   d                   ++ +   +  
       KKY16301.1 591 DRWiDNPNITAVIYAHLPGQDSGRALVEVMYGKQSPSGRLPYTVAKNESDYGNllNPHLPSgdlDIfypqinvtegvyidykdfISAN---Itp 681
                      ****999******************************************994445444444434225556667777777744432234...355 PP

                      .ETTTT-BCH CS
                      .xxxxxxxxx RF
  Glyco_hydro_3_C 196 .YpeGlglsY 204
                       Y++G+gl+Y
       KKY16301.1 682 rYEFGFGLTY 691
                      5999999998 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   7.5e-23   4.5e-19       1      70 [.     747     812 ..     747     813 .. 0.99

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 7.5e-23
                 EEEEEEEEESS-STTSBS-EEEEEEEEEE-TT-EEEEEEEEECGGG-EEETTTTEEE--SCEEEEEEESS CS
    Fn3-like   1 evvqlYvsdpessverpvkeLkgFekveLapGesktvtftldrkdlsvwdeekqkwvvepGeytvlvgts 70 
                 ev+qlY+  p +    p+k+L+gFek ++++G+ +t +f+l+r+dls wd ++q+w++++G+y+++vg+s
  KKY16301.1 747 EVAQLYLGIPGG----PAKVLRGFEKHSIKQGKHATFQFDLTRRDLSTWDANSQSWILQEGTYEIFVGKS 812
                 8**********9....****************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (824 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 5305.33
//
Query:       KKY16302.1  [L=175]
Description: putative mpv17 pmp22 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-13   50.3   0.3    3.6e-13   49.5   0.3    1.4  1  Mpv17_PMP22  Mpv17 / PMP22 family
  ------ inclusion threshold ------
      0.036   14.3   0.5      0.061   13.6   0.5    1.3  1  DUF2530      Protein of unknown function (DUF2530)
       0.23   11.2   1.2         12    5.7   0.1    2.3  2  Sensor_TM1   Sensor N-terminal transmembrane domain


Domain annotation for each model (and alignments):
>> Mpv17_PMP22  Mpv17 / PMP22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.3     6e-17   3.6e-13      18      62 .]     125     169 ..     115     169 .. 0.93

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 6e-17
  Mpv17_PMP22  18 kfwptlkanwkvWppaqlinFyfvPlkfRvlfvnvvslgWntyLS 62 
                  + +p++++++k+Wp+a++i+F+f+P++ R++f ++++l+W++y+S
   KKY16302.1 125 ETVPVIVNGYKIWPIASIISFSFIPVERRIVFLSFIGLCWGVYMS 169
                  45699***************************************9 PP

>> DUF2530  Protein of unknown function (DUF2530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.5     1e-05     0.061      11      53 ..     124     166 ..     119     173 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1e-05
     DUF2530  11 tdprpvivvgtllWlvalvvllvvgdaleswlpvclaGlvvGl 53 
                 ++ +pviv g  +W +a ++ + +++   +++  + +Gl  G+
  KKY16302.1 124 KETVPVIVNGYKIWPIASIISFSFIPVERRIVFLSFIGLCWGV 166
                 6789***********************************9998 PP

>> Sensor_TM1  Sensor N-terminal transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1    0.0021        12      45      63 ..      11      29 ..       4      33 .. 0.84
   2 ?    4.3   0.1    0.0057        34       4      25 ..     142     163 ..     140     172 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0021
  Sensor_TM1 45 rvesLltqaeliAdvieaq 63
                ++ sL t  +liA++iea+
  KKY16302.1 11 QAASLSTVSNLIAQAIEAH 29
                5679*************95 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0057
  Sensor_TM1   4 llslnfSsLtrkIillnLlaLv 25 
                 ++s++f +  r+I++l  ++L+
  KKY16302.1 142 IISFSFIPVERRIVFLSFIGLC 163
                 6777888999**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.54
# Mc/sec: 974.92
//
Query:       KKY16303.1  [L=612]
Description: putative flavin-binding monooxygenase-like family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-16   57.6   0.0    1.8e-15   56.4   0.0    1.5  2  FMO-like       Flavin-binding monooxygenase-like
    5.3e-13   48.8   0.0    8.3e-12   44.9   0.0    2.3  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    3.2e-12   46.3   0.0    1.5e-10   40.8   0.0    2.7  3  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    5.7e-12   45.5   0.0    2.3e-08   33.6   0.0    2.1  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.4e-06   28.3   0.0    5.1e-05   23.3   0.0    2.6  2  NAD_binding_9  FAD-NAD(P)-binding
    7.1e-06   26.2   0.0    1.6e-05   25.0   0.0    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00048   19.8   0.0       0.29   10.7   0.0    3.6  4  DAO            FAD dependent oxidoreductase
    0.00082   18.2   0.0       0.53    8.9   0.0    2.2  2  HI0933_like    HI0933-like protein
  ------ inclusion threshold ------
      0.024   13.9   0.0        3.4    6.8   0.0    2.2  2  FAD_binding_3  FAD binding domain
       0.17   11.0   0.3        1.2    8.2   0.1    2.0  2  GIDA           Glucose inhibited division protein A
       0.18   12.4   0.0        5.3    7.7   0.0    2.5  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
       0.23   10.7   0.0       0.42    9.9   0.0    1.3  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0   1.2e-18   1.8e-15       3     194 ..      13     209 ..      11     253 .. 0.74
   2 ?   -2.8   0.0       1.1   1.6e+03     320     340 ..     386     406 ..     382     410 .. 0.83

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 1.2e-18
    FMO-like   3 kvaviGaGvsGlasikccleegleptcfe.rsddiGGlwrfkenvee.Grasiyksvvsnsskemscfsdfplpe.dypnf..lhnsklleylklfake 96 
                 kv viGaG sGl++ k+ l+    p   + +  di  l +  +        ++y  +++ s   +  +sdf + + ++p++  ++  +++ yl+++ak+
  KKY16303.1  13 KVIVIGAGWSGLVAAKTYLQFVSSPNNPNsHQIDITILDNSPNTGGVwSTPRLYPGLLAHSPNGLYEYSDFSMVDaEHPDYdlIPGPQVQTYLEAYAKH 111
                 899**************99876666543312334444433322222113569********************97747998866899************* PP

    FMO-like  97 fdllkyiqfkttvcsvkkrpdfstsGqwevvtekegkkesavfdavmvctGhhvnphlplesfpGiekfkGqyfhsrdy..kepevfkg...krvlviG 190
                 f++   i+f  tv  v++rp+  +  +w+v t + +   +   d ++v +G + +phlp  +f  +  ++G  +hs+     + ++ ++   k ++v+G
  KKY16303.1 112 FNVYDKIRFGVTVKHVHRRPNAEAETRWDVETSTGE---TLTCDKLIVASGLYSKPHLPDVAFSSV--YQGISIHSKFLgqMHEQIARDskiKDIIVVG 205
                 *******************************99865...55689*******************987..6788888874311233333331114555555 PP

    FMO-like 191 lGns 194
                    s
  KKY16303.1 206 GCKS 209
                 3333 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.1
    FMO-like 320 didvvifatGytfafpflees 340
                 + d++i++tG+  +  f+++ 
  KKY16303.1 386 KADAIIWCTGWQPSLEFFDDK 406
                 5799*********99999986 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.13   1.9e+02     187     204 ..       7      24 ..       1      56 [. 0.69
   2 !   44.9   0.0   5.6e-15   8.3e-12      99     226 ..     102     233 ..      93     248 .. 0.88
   3 ?   -3.0   0.0         2     3e+03     326     341 ..     382     397 ..     376     398 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.13
  K_oxygenase 187 ellakkriaVvGsGqSaa 204
                  ++ ++ +++V+G+G S+ 
   KKY16303.1   7 SSSRPTKVIVIGAGWSGL 24 
                  4678899******99974 PP

  == domain 2  score: 44.9 bits;  conditional E-value: 5.6e-15
  K_oxygenase  99 edYlrWvasqle..eqvrfgeeveevepdeeeee.elltveskdaegeeeelearnlvlgvG..tepkiPevleklegkervvHss...eylerkeel 188
                  + Yl+  a++++  +++rfg +v++v+ + ++e  ++++ve+     + e+l++ +l+++ G  ++p++P+v+ +   +   +Hs+   ++ e+++++
   KKY16303.1 102 QTYLEAYAKHFNvyDKIRFGVTVKHVHRRPNAEAeTRWDVET----STGETLTCDKLIVASGlySKPHLPDVAFSSVYQGISIHSKflgQMHEQIARD 195
                  6799999****98888***********999877668888887....46689***********889******987777689999998555666666679 PP

  K_oxygenase 189 lakkriaVvGsGqSaaeifedllrrqkkvelklvtrse 226
                   + k+i+VvG+ +Sa e ++  l+ ++++ +++v+r +
   KKY16303.1 196 SKIKDIIVVGGCKSAIEAINVFLDASPSKRIHWVVRPS 233
                  9**********************************965 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2
  K_oxygenase 326 eetlevdavvlATGYr 341
                  ++++++da++ +TG++
   KKY16303.1 382 KTEIKADAIIWCTGWQ 397
                  67899*********87 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       0.4     6e+02     165     180 ..      12      27 ..       3      33 .. 0.67
   2 !   40.8   0.0     1e-13   1.5e-10      79     221 ..      97     253 ..      78     265 .. 0.78
   3 ?    1.4   0.0       0.1   1.5e+02     256     276 ..     385     405 ..     356     419 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.4
  Pyr_redox_3 165 qkvvViGgknSavDaA 180
                  +kv+ViG++ S+  aA
   KKY16303.1  12 TKVIVIGAGWSGLVAA 27 
                  6677777776666555 PP

  == domain 2  score: 40.8 bits;  conditional E-value: 1e-13
  Pyr_redox_3  79 srkealeYlrevaksfel..piklfeeVesvkk.....edegfevetske.tyeAkkviiAtGefdkPnklnipGeek...lvkhyskvkefh..... 160
                   + ++  Yl+++ak+f++  +i+   +V+ v++     +++   vets++ t++++k+i+A G ++kP+++++ +++     ++h++   ++h     
   KKY16303.1  97 PGPQVQTYLEAYAKHFNVydKIRFGVTVKHVHRrpnaeAETRWDVETSTGeTLTCDKLIVASGLYSKPHLPDVAFSSVyqgISIHSKFLGQMHeqiar 194
                  5678999**********9778**********9865432356799****9769**********************998533457788777655521112 PP

  Pyr_redox_3 161 kyagqkvvViGgknSavDaAlelvrk..gaeVtvvtrgseiekeesdpsyslkpdienrleel 221
                  + + ++++V+Gg  Sa++a   + ++   +++++v+r s     +  p + l+p+ +++l ++
   KKY16303.1 195 DSKIKDIIVVGGCKSAIEAINVFLDAspSKRIHWVVRPSD----HGVPIAALNPHFRPNLIAM 253
                  567899************9877777766899999999873....3356777888777777655 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.1
  Pyr_redox_3 256 evkddvvlatGykpdlsflkk 276
                   + d ++ +tG++p+l+f+++
   KKY16303.1 385 IKADAIIWCTGWQPSLEFFDD 405
                  234666777999999999875 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.5e-11   2.3e-08       2     163 ..      13     219 ..      12     242 .. 0.65
   2 !    9.7   0.0    0.0003      0.45     223     264 ..     382     424 ..     367     429 .. 0.79

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.5e-11
                  SEEEE--SHHHHHHHHHHHH..........HTS-EEEEE..TTHCHHHCSHHHHCHHHHHHHHHHHHH.............................. CS
                  xxxxxxxxxxxxxxxxxxxx..........xxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx.............................. RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq..........agakvtlve..legtclnggcllskallgvaedaeias.............................. 57 
                  +v+viG+G+ Gl aa+t  q          +++++t+++   ++  ++ ++ l++ ll+ + ++  +                               
   KKY16303.1  13 KVIVIGAGWSGLVAAKTYLQfvsspnnpnsHQIDITILDnsPNTGGVWSTPRLYPGLLAHSPNGLYEYsdfsmvdaehpdydlipgpqvqtyleayak 110
                  8***************************999*******77744444555555555555444444333367888888**********877766655543 PP

                  ..HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC.........TCEEEEEESEEEE---..EEE-BCTCT..TC..TTBEECCSECHH.HHHHCC CS
                  ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxx..xxxxxxxxx..xx.xxxxxxxxxxxxx.xxxxxx RF
  Pyr_redox_2  58 ..evvkklnqgielllgeevvkidpgkkkvklekkke.........gdeekiaydklvlAtG..ssprdlgip..Gv.aenvgklvrtlds.aealkl 138
                    +v +k++ g     +          k+v+ + + e         + +e++++dkl++A+G  s+p+++++    v +   +++ + l +  e++ +
   KKY16303.1 111 hfNVYDKIRFG----VT---------VKHVHRRPNAEaetrwdvetSTGETLTCDKLIVASGlySKPHLPDVAfsSVyQGISIHS-KFLGQmHEQIAR 194
                  33222222222....22.........222222222223333444458999************66677777555333332233333.333330344444 PP

                  SS-TSEEEEES-SHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 139 kllpkrivvvGgGyiGvElAaalak 163
                  + + k+i+vvGg   ++E   ++ +
   KKY16303.1 195 DSKIKDIIVVGGCKSAIEAINVFLD 219
                  44449*******9999998777655 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0003
                  SCEEEESEEEE-S-EEES-HHCS..HCCT-EEEETTEEE--TTS CS
                  xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 223 geeidadlvvvavGvrpstelle..eklglelderggivvdefl 264
                  ++ei+ad +++++G +ps e+++  ek+ l l ++   +vd ++
   KKY16303.1 382 KTEIKADAIIWCTGWQPSLEFFDdkEKVRLGL-PHPVSEVDMHM 424
                  789*****************998655555544.55555666555 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   3.4e-08   5.1e-05       2     154 ..      16     159 ..      15     160 .. 0.75
   2 ?   -2.4   0.0       2.8   4.1e+03     139     154 ..     380     395 ..     356     397 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 3.4e-08
  NAD_binding_9   2 ivGaGprGlavlerLlara.....kkkspleitlfdpsepgagrvwrtdq.seelllNvpasemslftddpptfaeWlrergaleeaeeldpddfv 91 
                    ++GaG +Gl +++  l+       +++++++it+ d+s+   g+vw+t +  + ll ++p +           ++e+ +      + +e  ++d +
     KKY16303.1  16 VIGAGWSGLVAAKTYLQFVsspnnPNSHQIDITILDNSPNT-GGVWSTPRlYPGLLAHSPNG-----------LYEYSDFSMV--D-AEHPDYDLI 96 
                    8***********99998887788888999***********9.9****997556666655555...........4455444442..1.356799*** PP

  NAD_binding_9  92 pRalyGrYlrdlfeellarlpegvtvevhraevvd..leeradgqavlladgaslaadaVvLAlG 154
                    p   ++ Yl+++++++   + +++++ v  ++v++   +e+++++ v +++g++l++d++++A G
     KKY16303.1  97 PGPQVQTYLEAYAKHFN--VYDKIRFGVTVKHVHRrpNAEAETRWDVETSTGETLTCDKLIVASG 159
                    ************99976..33344444444444441133445667999**************998 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.8
  NAD_binding_9 139 adgaslaadaVvLAlG 154
                     ++++++ada++ ++G
     KKY16303.1 380 MRKTEIKADAIIWCTG 395
                    4678899*******99 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.1e-08   1.6e-05       1      42 [.      16      68 ..      16      83 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.1e-08
                   EE--SHHHHHHHHHHHC..........CTEEEEEE-SSSSSSGGG-EECE.TT CS
  NAD_binding_8  1 IvGaGlsGlvaAylLak..........agfdvlllekrdrlGGraasyev.pg 42
                   ++GaG sGlvaA ++ +          +++d+++l++++ +GG +++ ++ pg
     KKY16303.1 16 VIGAGWSGLVAAKTYLQfvsspnnpnsHQIDITILDNSPNTGGVWSTPRLyPG 68
                   8***********997644444544444799****************9998766 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.041        61       1      29 [.      13      53 ..      13      87 .. 0.70
   2 !   10.7   0.0   0.00019      0.29     162     213 ..     117     169 ..     100     188 .. 0.74
   3 ?    0.2   0.0       0.3   4.5e+02     191     241 ..     196     243 ..     174     261 .. 0.64
   4 ?   -0.5   0.0      0.48   7.1e+02     180     207 ..     378     402 ..     363     456 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.041
                EEEEECTSHHHHHHHHHHHH...TT.........EEEEESS CS
         DAO  1 dvviiGGGiiGlstAyeLar...rg.........Vtllekg 29
                +v++iG+G  Gl +A    +    +         +t+l+ +
  KKY16303.1 13 KVIVIGAGWSGLVAAKTYLQfvsSPnnpnshqidITILDNS 53
                59**********99965533222112234445666666665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00019
                 EEEESECEEEE.EEEE...TCEEEEEEECT.EEE.EEEEEEEE--GGGHH.HHHTTCTT CS
         DAO 162 eilegtevtgl.eeed...gkvwgverttp.gen.daadavVnaaGawsd.llgllkel 213
                 +i++g +v+++ ++++   +  w v  +t+ ge+ + +d++++a G++s+  l   +++
  KKY16303.1 117 KIRFGVTVKHVhRRPNaeaETRWDV--ETStGETlT-CDKLIVASGLYSKpHL---PDV 169
                 7999999999636655666566888..788799955.5**********98776...444 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.3
                 EEEEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSE CS
         DAO 191 daadavVnaaGawsd.llgllkeldlpispvrgqvlvlkplseklvspaail 241
                 ++++ +++  G+ s  ++  + ++ l  sp +  ++v++p +   v  aa+ 
  KKY16303.1 196 SKIKDIIVVGGCKSAiEA--I-NVFLDASPSKRIHWVVRPSDH-GVPIAALN 243
                 357889999999987644..2.2224669*********77655.33222333 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.48
                 EEEEEECTEEEEEEEEEEE--GGGHH.HH CS
         DAO 180 wgverttpgendaadavVnaaGawsd.ll 207
                 w   r+t +++  ada++ ++G + + ++
  KKY16303.1 378 WYM-RKT-EIK--ADAIIWCTGWQPSlEF 402
                 555.444.554..799******6654522 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0015       2.2       2      19 ..      13      30 ..      12      52 .. 0.92
   2 !    8.9   0.0   0.00035      0.53     131     170 ..     123     166 ..     101     172 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0015
                 SEEEE--SHHHHHHHHHH CS
  HI0933_like  2 dviviGgGaAGlmaAisa 19
                 +viviG+G +Gl aA + 
   KKY16303.1 13 KVIVIGAGWSGLVAAKTY 30
                 89*************875 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00035
                  -EEEE....ECETTE.EEEEE.TTEEEEESEEEE----SS-GGG CS
  HI0933_like 131 evksv....ekeedgkfrvktkseeeleadklvlAtGGlSiPkl 170
                  +vk+v    ++e++ +  v+t+++e+l++dkl++A+G  S P+l
   KKY16303.1 123 TVKHVhrrpNAEAETRWDVETSTGETLTCDKLIVASGLYSKPHL 166
                  4444433334567778899999***************9999986 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0093        14       2      18 ..      12      28 ..      11      33 .. 0.91
   2 ?    6.8   0.0    0.0023       3.4      92     166 ..      86     162 ..      53     167 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0093
                   EEEEEE--SHHHHHHHH CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlal 18
                   t+V+++GaG +Gl++a+
     KKY16303.1 12 TKVIVIGAGWSGLVAAK 28
                   79*************96 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0023
                    CHHCST-CEE--HHHHHHHHHHHHHHHT..EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT- CS
  FAD_binding_3  92 lesspervtvypqteleriLvehaeerg..lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrS 166
                    ++++++++ ++p ++++ +L++ a+      ++rf+  v+ +++  + ++ +  d et + et++++ l+ a G  S
     KKY16303.1  86 VDAEHPDYDLIPGPQVQTYLEAYAKHFNvyDKIRFGVTVKHVHRRPNAEAETRWDVETSTGETLTCDKLIVASGLYS 162
                    5889999****************999885468********77777777666666***************99999877 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1   0.00078       1.2       1      17 [.      13      29 ..      13      34 .. 0.88
   2 ?    0.5   0.0      0.17   2.5e+02     129     153 ..     139     163 ..     120     214 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00078
                CEEEE-SSHHHHHHHHH CS
        GIDA  1 dviViGgGhAGceAAla 17
                +viViG+G++G+ AA +
  KKY16303.1 13 KVIVIGAGWSGLVAAKT 29
                69************976 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.17
                 EEEEETTS-EEEECEEEE--TT-BT CS
        GIDA 129 kgvvtedgetikakavviatGtflk 153
                   v t++get+++++ ++a+G ++k
  KKY16303.1 139 WDVETSTGETLTCDKLIVASGLYSK 163
                 56999****************9654 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0035       5.3       1      21 [.      13      33 ..      13      57 .. 0.78
   2 ?    1.8   0.0      0.24   3.5e+02       2      21 ..     201     220 ..     200     237 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0035
                EEEEECSSHHHHHHHHHHHHT CS
   Pyr_redox  1 kvvvvGgGyiglElAgalael 21
                kv+v+G+G++gl +A+++ ++
  KKY16303.1 13 KVIVIGAGWSGLVAAKTYLQF 33
                79*************998554 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.24
                 EEEECSSHHHHHHHHHHHHT CS
   Pyr_redox   2 vvvvGgGyiglElAgalael 21 
                 ++vvGg  +++E+ +++ + 
  KKY16303.1 201 IIVVGGCKSAIEAINVFLDA 220
                 89***********9999664 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00028      0.42      27      48 ..      10      31 ..       4      36 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00028
                 ---EEEEESTSHHHHHHHHHHH CS
  AlaDh_PNT_C 27 epakvlviGgGvaGlqAiatak 48
                 +p kv+viG+G  Gl A++t  
   KKY16303.1 10 RPTKVIVIGAGWSGLVAAKTYL 31
                 799***************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.49
# Mc/sec: 3756.18
//
Query:       KKY16356.1  [L=252]
Description: hypothetical protein UCRPC4_g05948 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0017   17.8   2.2       0.42    9.9   0.1    2.1  2  DUF5057   Domain of unknown function (DUF5057)


Domain annotation for each model (and alignments):
>> DUF5057  Domain of unknown function (DUF5057)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   2.4e-05      0.42     146     175 ..      30      60 ..      22      83 .. 0.78
   2 !    8.1   0.2   8.2e-05       1.5     156     196 ..     194     232 ..     103     249 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 2.4e-05
     DUF5057 146 dsdas.anatYrvklylDkNaDGkFsetekg 175
                 ++ ++ + a+++++ ++D N+DG+ se   +
  KKY16356.1  30 KKHEDaQMAKFNIEAFVDDNEDGRISERRAR 60 
                 334444999*****************98844 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 8.2e-05
     DUF5057 156 rvklylDkNaDGkFsetekgdeankivvsatatgaelekny 196
                 +  ly+D+N DG  s++ek++ + k+ v  + +  e e   
  KKY16356.1 194 EWALYFDRNDDGLKSQDEKLKGKRKVNVLLERKLIEKE--N 232
                 668***************88888888766553333333..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1531.44
//
Query:       KKY16357.1  [L=522]
Description: putative mfs transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-28   99.5  27.7    1.8e-28   99.5  27.7    1.6  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5  27.7     1e-32   1.8e-28      14     352 ..     103     469 ..      80     470 .. 0.82

  Alignments for each domain:
  == domain 1  score: 99.5 bits;  conditional E-value: 1e-32
       MFS_1  14 ilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaal 109
                 +l+p + + ++++d ++++s++g       +  + + + + +ls  fGr + ++++ +++fa +++++   +  +  ++++r+l G+++ ++  +g+++
  KKY16357.1 103 TLIPQAKIwHMTSD-NVNHSQAGN-----VFMLGPGGIAAVALSAYFGRLPvLFWFLVVAFATAAWCAG--AKTFdSFMAARILNGFFSTVAQGGGLYF 193
                 33444444444444.455555554.....44448888889999999*****888888888888888888..677779********************** PP

       MFS_1 110 iadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee................kgtg 192
                 + d++  ++r+r i ++++++ l++ +gpl++++++s   W+++f++ ++++ la++l +l++pe++ +r+   + +                  +  +
  KKY16357.1 194 VNDMYFFNQRARKINIWAGFIILSPYFGPLFAAFITSTQHWSVAFWVYTAMTGLALILTILFVPETYYNRHAHLESRPAngsriatligfhqrrvNLLE 292
                 ************************************999*******************99999888888888877777789999999999888884444 PP

       MFS_1 193 paplvp....awkallkdpvlwillialllfffgfsg.lltllplylqevlglsglllaglllallalvgailallagrlsdr............lgrr 274
                 p  +v+    ++k + k+  ++   +a ++ +f++   + t+l ++l   +g++ +l++g+++  + +++a + + + +l+d             + ++
  KKY16357.1 293 PNTFVDamlrPIKVIMKPTAFL--SVAYYCLTFAWVVgINTTLSIFLEPLYGFG-ALQIGYFYFTPIVAVALGEITGHWLHDAiarqyihkhhghFEPE 388
                 44444466667********995..44444444455555****************.8****999999999999988888888887777777777777778 PP

       MFS_1 275 rrlllallllllaalglallavtssavllll.vlvliGf.glgfv..fpsllalasdlappeeagtasglfntagslggalg 352
                  rl  +++++ ++  gl+ l+++ +  ++++  +v++G+  +g++  +++l+a+  d++p e +g ++++ n a+ lgg++ 
  KKY16357.1 389 VRLRAIFVSIPCMISGLVGLGFCLDRGWHYMtTSVCWGLyVFGVMiaTVALNAYNLDSYP-EGSGEVAAWLNQARVLGGFII 469
                 888888888888889999999998889999989999999888888878899999999997.******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3301.27
//
Query:       KKY16358.1  [L=880]
Description: hypothetical protein UCRPC4_g05950 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-07   31.9   0.0    0.00033   20.7   0.0    2.7  2  Bromodomain  Bromodomain


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.8e-08   0.00033       3      47 ..     626     670 ..     624     688 .. 0.92
   2 !    8.2   0.0   0.00014       2.6      53      76 ..     728     752 ..     698     755 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.8e-08
                  HHHHHBHTTTCGGGGCSTT-GCCSTTHHHH.SS---HHHHHHHHH CS
  Bromodomain   3 kilsellehklaepFlepvdpeefpdyyavikkPldLstIkkkle 47 
                   i++++  hk a +F +p++++  p y++ i +P dL+ Ik+ ++
   KKY16358.1 626 PIMNDVTAHKHAGIFAKPLTERDAPGYKSLIYRPSDLKSIKSMIH 670
                  58999************************************9886 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00014
                  SHHHHHHHHHHHHHHHHHHSH.TTS CS
  Bromodomain  53 sladfeadlkllfsNarkyng.egs 76 
                  + a++e++l ++f Na+++n+ ++s
   KKY16358.1 728 NSAQLEKELLRMFANAVMFNPmPRS 752
                  6799****************97776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (880 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 5606.13
//
Query:       KKY16359.1  [L=1428]
Description: putative two-component sensor protein histidine protein kinase (dhkj) [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-25   88.8   0.1    6.9e-25   87.7   0.1    1.6  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    9.1e-20   70.9   0.0    1.7e-19   70.0   0.0    1.5  1  Response_reg  Response regulator receiver domain
    1.1e-12   47.8   0.0      7e-12   45.2   0.0    2.6  1  HisKA         His Kinase A (phospho-acceptor) domain
  ------ inclusion threshold ------
      0.056   13.9   1.4        3.4    8.2   0.2    3.0  3  SecD-TM1      SecD export protein N-terminal TM region
       0.07   13.4   0.8       0.18   12.0   0.8    1.7  1  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
      0.098   12.5   0.0       0.23   11.3   0.0    1.5  1  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik
       0.18   11.9   2.5       0.26   11.4   1.2    2.0  2  Spore_III_AB  Stage III sporulation protein AB (spore_III_AB)
        0.3   11.1   8.1       0.67   10.0   8.1    1.6  1  Sugarporin_N  Maltoporin periplasmic N-terminal extension
       0.36   11.2   2.5       0.93    9.9   2.5    1.7  1  RIC3          Resistance to inhibitors of cholinesterase homo
       0.87   10.1   8.1       0.34   11.4   2.4    2.8  2  DUF4140       N-terminal domain of unknown function (DUF4140)
        2.5    8.5   8.0         14    6.1   8.5    2.0  2  Csm1_N        Csm1 N-terminal domain
        2.7    8.7   6.8        8.7    7.0   6.8    1.9  1  SlyX          SlyX
        3.4    7.5   6.1        8.3    6.3   6.1    1.6  1  DivIC         Septum formation initiator


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.1     5e-28   6.9e-25       3     110 ..     870     984 ..     868     986 .. 0.90

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 5e-28
                 HHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE.......EE...TEEEEEEEESSSSSTTHHHT.GTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTT CS
   HATPase_c   3 ekrLrqiisnlvdNavkfatkageieveika.......se...ddlvisveDnGiGipkedlk.klfekfsqddstkrggggtGlGlsivkklvelmgG 90 
                 +  Lr++i nlv+N++k+ t+ g+++v++++       se   +++++++ D+G+Gi+ e l+ klf++f q   +++ + gtGlGlsiv+++v+++gG
  KKY16359.1 870 PGALRRVIMNLVGNSLKY-TSRGSVRVRLQQqhvqsddSEherKNITLTIADTGKGISSEYLQsKLFTPFAQ---EDSLTPGTGLGLSIVRSIVTMLGG 964
                 578***************.99*********87776554116678****************************...566689****************** PP

                 EEEEEEETTTEEEEEEEEES CS
   HATPase_c  91 eiwvesepgrGttftftlpl 110
                 +i v+s  g+Gtt+t++lp 
  KKY16359.1 965 TIDVRSAVGQGTTITVNLPV 984
                 ******************97 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.0   1.2e-22   1.7e-19       1     107 [.    1299    1413 ..    1299    1418 .. 0.91

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 1.2e-22
                    EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH..ESEEEEESSCSSSEHHHHHHHHHHCT......TTSEEEEEESSTSHHHHH CS
  Response_reg    1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek..vdlillDinmpgmdGlellkeireed......pelpviiltahseeedav 87  
                    vl+vdD+ ++++ll++++++++y+++ +ae+g +a+e +k+++  +d+i++Di+mp +dG+ +++ ire +          vi+lt+ ++  d +
    KKY16359.1 1299 VLLVDDNAINLRLLQTFMRKRKYNSISSAENGVQAVEAVKSSSrnFDVIFMDISMPLLDGFSATRLIREWEtanqvkTPAMVIALTGLASGRDQN 1393
                    89*************************************877667***********************999775533336799************ PP

                    HHHHCTESEEEESSG-HHHH CS
  Response_reg   88 ealkagaddflsKpfdpeeL 107 
                    ea++ g+d +++Kp++ +e+
    KKY16359.1 1394 EAFSSGVDIYMTKPVSFKEV 1413
                    ***************98876 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   5.1e-15     7e-12       2      65 ..     705     767 ..     704     769 .. 0.94

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 5.1e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrie 65 
                 +g+f+ +++HELr PL++il+ ae L ++ + +  ++ + +tie ++r l++ ++ +Ld+s+i 
  KKY16359.1 705 KGDFIGSISHELRSPLHGILASAEFLLDT-EMSVFQRSLADTIEACGRTLLDTINHVLDYSKIS 767
                 89************************996.67799999************************96 PP

>> SecD-TM1  SecD export protein N-terminal TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.2    0.0025       3.4      21      72 ..      31      82 ..      26      94 .. 0.85
   2 ?   -2.0   0.0       3.7   5.1e+03      48     100 ..     752     813 ..     744     815 .. 0.75
   3 ?    3.0   0.0       0.1   1.4e+02      46      84 ..     886     924 ..     877     937 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0025
    SecD-TM1 21 lyalPnlygedpavqisaakatlkvdeatlskveqaLkeagievksielene 72
                l+al+n   ed +v i +++++++++++ l+++e++L+e + + ++ +  ++
  KKY16359.1 31 LFALSNGAVEDLSVSIFSKQQSVQTQNRELEQLEAKLRETEQRLQQQKDRRK 82
                789**********************************998877776665555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.7
    SecD-TM1  48 atlskveqaLkeagievksielenes........llvrfestdqqlkAkdvlekaL.gddyv 100
                 ++l++++++L+ ++i+  + ++ +++        ll  f++td  + A++v+e  + g++yv
  KKY16359.1 752 TLLDTINHVLDYSKISSFEKSFRERRqlpnaappLLRLFSQTDIAAIAEEVIEGLVvGRQYV 813
                 56788999999999987777666665588888877888999999999999998654355555 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.1
    SecD-TM1  46 deatlskveqaLkeagievksielenesllvrfestdqq 84 
                 + +   +v+  L++++++ ++ e e++++++++++t + 
  KKY16359.1 886 KYTSRGSVRVRLQQQHVQSDDSEHERKNITLTIADTGKG 924
                 55566789999********************99998765 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.8   0.00013      0.18      27      66 ..      56      95 ..      44     110 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT CS
  Seryl_tRNA_N 27 dvdelleldekrrelqveleelqaerNelskeIgkakkkk 66
                  +  el +l++k re++++l++ + +r++ls++ g+ ++ +
    KKY16359.1 56 QNRELEQLEAKLRETEQRLQQQKDRRKRLSQQLGSSSQPG 95
                  557899****************************999887 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00017      0.23       5      60 ..     875     942 ..     872     994 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
  HATPase_c_3   5 kAlaelvdNsld.Adaenvkievn.......knrgkt......geivieDdGkGmseeelkn.alr.latss 60 
                   +++ lv Nsl   +  +v + ++       +    +       +++i D GkG+s e l++  ++ +a+++
   KKY16359.1 875 RVIMNLVGNSLKyTSRGSVRVRLQqqhvqsdD----SeherknITLTIADTGKGISSEYLQSkLFTpFAQED 942
                  689999****9977778899998844444441....04444448999*************994555244433 PP

>> Spore_III_AB  Stage III sporulation protein AB (spore_III_AB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.2   0.00019      0.26     119     158 ..      50      89 ..      30      92 .. 0.94
   2 ?   -3.0   0.0       4.9   6.7e+03      39      70 ..     730     761 ..     723     776 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXX CS
  Spore_III_AB 119 ysdregqlkalelaleeleeeieeareeakkkeklyrtlG 158
                   + ++++q + le ++++l+e +++++++++++++l + lG
    KKY16359.1  50 QQSVQTQNRELEQLEAKLRETEQRLQQQKDRRKRLSQQLG 89 
                   56789*********************************99 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.9
                   HHHHHHHH-SS-HHHHHHHHHHCS-TTHHHHH CS
  Spore_III_AB  39 llegeirygatpLpealeklaeksesplseff 70 
                   ll +e++  +++L + +e +++   + ++ ++
    KKY16359.1 730 LLDTEMSVFQRSLADTIEACGRTLLDTINHVL 761
                   78999999999999999999987777666553 PP

>> Sugarporin_N  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   8.1   0.00049      0.67      32      54 ..      60      82 ..      57      83 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00049
  Sugarporin_N 32 LaaLEkrLqeAeqraqaAearak 54
                  L++LE+ L+e+eqr+q+ ++r k
    KKY16359.1 60 LEQLEAKLRETEQRLQQQKDRRK 82
                  9******************9965 PP

>> RIC3  Resistance to inhibitors of cholinesterase homologue 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.5   0.00068      0.93     117     142 ..      51      76 ..      40      77 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00068
        RIC3 117 kkkteteeeLeeLqerLaeTEramek 142
                 ++ ++++ eLe+L+ +L+eTE+ +++
  KKY16359.1  51 QSVQTQNRELEQLEAKLRETEQRLQQ 76 
                 44556799**************9986 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.4   0.00025      0.34      51      95 ..      43      88 ..      21      90 .. 0.74
   2 ?    0.2   0.3      0.76     1e+03      38      66 ..     416     461 ..     409     475 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00025
     DUF4140 51 dvqvervpnreaeee.elkalraeleeledelaaledelaaaearl 95
                +v++ +++++ + ++ el++l+a+l+e e++l++ +d++++++++l
  KKY16359.1 43 SVSIFSKQQSVQTQNrELEQLEAKLRETEQRLQQQKDRRKRLSQQL 88
                44443333333333336**************************998 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.76
     DUF4140  38 SlrVe.......ga.gaatildvqvervpnreaeee.........e 66 
                 S+r+        g+  +a ++d q++++   e+++e         +
  KKY16359.1 416 SVRIAresspivGTtSSAEVTDSQTRSSRVAEEADEsrnhpgtlvR 461
                 5555544444444425599999999999999998886655554441 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   8.5      0.01        14      32      66 ..      49      83 ..      45      87 .. 0.92
   2 ?   -2.9   0.0       6.5     9e+03       1      28 [.    1125    1157 ..    1125    1178 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.01
      Csm1_N 32 LsqkletkdqeiesLkeqlaeleekvkeleerrkk 66
                ++q ++t+++e+e+L+++l e e++++++++rrk 
  KKY16359.1 49 KQQSVQTQNRELEQLEAKLRETEQRLQQQKDRRKR 83
                6899***************************9986 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.5
      Csm1_N    1 mDpLteYK.....esVqerldsAdllvsklvhE 28  
                  m pL  YK     +s  e++d+  ++vs +  E
  KKY16359.1 1125 MSPLGPYKlarslRSCIEQIDNFGMAVSGVSTE 1157
                  667777775533345667888888888777665 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.8    0.0063       8.7      17      58 ..      37      78 ..      27      87 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0063
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXX CS
        SlyX 17 dtieeLndvvaeqqqqidrlqrqlrllaerlkeleessgase 58
                 ++e+L+  ++  qq ++ + r+l++l+ +l+e e++ ++++
  KKY16359.1 37 GAVEDLSVSIFSKQQSVQTQNRELEQLEAKLRETEQRLQQQK 78
                579999999999999999999999999999999999877544 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.1     0.006       8.3      12      52 ..      46      86 ..      42      90 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.006
                XXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XX CS
       DivIC 12 gkkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLks 52
                + + +++++ +++e+++l+a+l +  ++ ++ +++ k+L++
  KKY16359.1 46 IFSKQQSVQTQNRELEQLEAKLRETEQRLQQQKDRRKRLSQ 86
                5566788999999999****999999999999999999954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1179  (0.0657594); expected 358.6 (0.02)
Passed bias filter:                      789  (0.0440069); expected 358.6 (0.02)
Passed Vit filter:                       147  (0.00819901); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.23u 0.34s 00:00:01.57 Elapsed: 00:00:00.53
# Mc/sec: 8103.95
//
Query:       KKY16398.1  [L=355]
Description: putative zinc finger protein rts2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.1e-51  171.4   1.2    1.2e-50  170.7   1.2    1.3  1  Kin17_mid       Domain of Kin17 curved DNA-binding protein
    8.2e-06   26.0   2.0    8.2e-06   26.0   2.0    2.1  2  zf-C2H2_jaz     Zinc-finger double-stranded RNA-binding
    2.6e-05   24.4   3.1    6.5e-05   23.2   3.1    1.7  1  zf-met          Zinc-finger of C2H2 type
  ------ inclusion threshold ------
      0.014   15.7   0.6      0.014   15.7   0.6    1.9  2  zf-C2H2_2       C2H2 type zinc-finger (2 copies)
      0.054   12.7   0.1       0.09   12.0   0.1    1.4  1  Methyltransf_7  SAM dependent carboxyl methyltransferase


Domain annotation for each model (and alignments):
>> Kin17_mid  Domain of Kin17 curved DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.7   1.2   3.2e-54   1.2e-50       1     126 []      52     183 ..      52     183 .. 0.99

  Alignments for each domain:
  == domain 1  score: 170.7 bits;  conditional E-value: 3.2e-54
   Kin17_mid   1 rqleliaentkkvieeyskeFekdFlklLrtrhgekkveankvYqeyiqdkdHvhmNaTkwtsLteFvkyLgkegkvkveete......kgllisyidr 93 
                 r+++ +++n+++vi+eys++F kdF++lLrt+hgek++++n++Yqeyi++k+H+hmN+Tkw+sLt+  +yLg+eg+++v+e+e       g++is+id+
  KKY16398.1  52 RRMQAVSTNSNQVINEYSNQFLKDFIQLLRTSHGEKRIHINRFYQEYIANKSHIHMNSTKWHSLTNLAQYLGREGICRVDEEEpgengrGGIFISWIDN 150
                 78********************************************************************************99999999********* PP

   Kin17_mid  94 spealerkeklekkekaekedeereekllekqi 126
                 speal+r+e+++kke++++ deere++l++ qi
  KKY16398.1 151 SPEALRRQEAIRKKERQDRGDEEREQMLIRAQI 183
                 ******************************998 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   2.0   2.3e-09   8.2e-06       2      26 ..      26      50 ..      25      51 .. 0.96
   2 ?   -1.6   1.3         1   3.7e+03      20      26 ..     106     113 ..     104     113 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 2.3e-09
                 CBBTTTTBBBSSHHHHHCCTTSHHH CS
  zf-C2H2_jaz  2 fYCvlCdKyFksenaldnHlkSKkH 26
                 +YC++C+K++ +en +++H +S  H
   KKY16398.1 26 WYCQVCEKQCRDENGFKQHTSSEVH 50
                 8*********************999 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1
                  CTTS.HHH CS
  zf-C2H2_jaz  20 HlkS.KkH 26 
                  H++S K+H
   KKY16398.1 106 HMNStKWH 113
                  9***8888 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   3.1   1.8e-08   6.5e-05       1      25 []      26      50 ..      26      50 .. 0.98

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.8e-08
      zf-met  1 fyCelCnvtfnsesqlksHlqGKkH 25
                +yC +C +++ +e+ +k+H  + +H
  KKY16398.1 26 WYCQVCEKQCRDENGFKQHTSSEVH 50
                9*********************998 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.6   3.8e-06     0.014      50      87 ..      25      63 ..       8      76 .. 0.76
   2 ?   -1.3   0.3      0.77   2.8e+03      66      82 ..      95     111 ..      81     124 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.8e-06
   zf-C2H2_2 50 kleClyCekefkslealreHmkkkgHckine.eeeeekk 87
                ++ C +Cek++++ + +++H +++ H + ++  ++++++
  KKY16398.1 25 RWYCQVCEKQCRDENGFKQHTSSEVHVRRMQaVSTNSNQ 63
                689************************988733333333 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.77
   zf-C2H2_2  66 lreHmkkkgHckineee 82 
                 ++e +++k+H  +n ++
  KKY16398.1  95 YQEYIANKSHIHMNSTK 111
                 45666777777776543 PP

>> Methyltransf_7  SAM dependent carboxyl methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.5e-05      0.09     132     174 ..      44      86 ..      22     130 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.5e-05
                     TTSTT--TTTSSSSS--H.HHHHHHHHHHHHHHHHHHHHHHHH CS
  Methyltransf_7 132 kkskalnkgniyisktsppevvkaYaeqfqkDfslfLklRseE 174
                     ++s+ +   ++ + +t++++v++ Y++qf kDf ++L+  + E
      KKY16398.1  44 HTSSEVHVRRMQAVSTNSNQVINEYSNQFLKDFIQLLRTSHGE 86 
                     4455556667777889999******************987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1151  (0.0641977); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.49
# Mc/sec: 2160.44
//
Query:       KKY16399.1  [L=342]
Description: putative zn2+-binding protein melusin contains chord domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 2157.64
//
Query:       KKY16400.1  [L=604]
Description: putative atp-dependent zn protease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-17   64.3   0.0    3.6e-17   63.0   0.0    1.7  1  AAA           ATPase family associated with various cellular 
  ------ inclusion threshold ------
      0.095   13.1   0.1       0.37   11.2   0.0    2.1  2  RNA_helicase  RNA helicase


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0     4e-21   3.6e-17       1     131 [.     233     354 ..     233     355 .. 0.92

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 4e-21
                 EEEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakel...gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgv 96 
                 +++yGppG GKT+ +ka+ ++l   + ++ ++ + +l+    g  e ++ ++f++a+++a p+ l+++++d++++++          v + +l+e+dg+
  KKY16400.1 233 LIFYGPPGNGKTISIKAMSHDLygrKDPVPTLYVRSLT--SYGGPEYSLGQIFAKARQQA-PCLLVFEDLDSIVTDQ----------VRSFFLNEVDGL 318
                 589******************96555778888888888..77999**************9.*************999..........9*********** PP

                 TTSSSTEEEEEEESSGGGSTHHHH.S.TTSSEEEETT CS
         AAA  97 kkkeskvivigatnrpdkldpall.r.gRfdrkieie 131
                 +++++ +++ig tn+ ++ldp +  r +Rfdrk+ ++
  KKY16400.1 319 SNNDG-ILMIGSTNHLERLDPGISkRpSRFDRKYLFG 354
                 **866.******************99******99876 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.98   8.8e+03      47      76 ..     187     215 ..     153     220 .. 0.63
   2 ?   11.2   0.0   4.1e-05      0.37       2      37 ..     234     267 ..     233     322 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.98
  RNA_helicase  47 YtgqevvvidDfgqvkdeenpsdlaelirl 76 
                   Y++ +   +dD+   k++ ++  +a+++r 
    KKY16400.1 187 YKSIQKASWDDVILEKEK-KQTVIADINRF 215
                   555566667777666655.33366666655 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 4.1e-05
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsvysr 37 
                   ++yGp+g GK+  +k ++++l ++   +  +++y+r
    KKY16400.1 234 IFYGPPGNGKTISIKAMSHDLYGRK--DPVPTLYVR 267
                   79******************99766..333555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.49
# Mc/sec: 3700.32
//
Query:       KKY16401.1  [L=1006]
Description: putative histidine kinase hhk6p [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-28   99.9   0.1    2.9e-28   98.6   0.1    1.7  1  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l
    1.8e-24   86.1   0.1    3.2e-24   85.2   0.1    1.4  1  Response_reg    Response regulator receiver domain
    6.3e-15   55.2   0.1      2e-14   53.6   0.1    1.9  1  PAS_3           PAS fold
      1e-07   32.2   0.0    0.00069   19.8   0.0    3.8  3  PAS_9           PAS domain
    1.1e-07   31.8   0.0    0.00082   19.4   0.0    2.6  2  PAS             PAS fold
    9.3e-07   29.1   0.0      0.049   13.9   0.0    3.4  3  PAS_4           PAS fold
    1.3e-05   25.1   0.1    3.9e-05   23.6   0.1    1.9  1  HisKA           His Kinase A (phospho-acceptor) domain
    1.5e-05   24.8   0.0    2.9e-05   23.9   0.0    1.4  1  HATPase_c_3     Histidine kinase-, DNA gyrase B-, and HSP90-l
  ------ inclusion threshold ------
      0.033   14.2   0.0      0.071   13.1   0.0    1.5  1  HATPase_c_2     Histidine kinase-like ATPase domain
      0.046   13.9   0.0       0.18   11.9   0.0    2.0  1  MLTR_LBD        MmyB-like transcription regulator ligand bind
      0.078   12.4   0.0       0.16   11.4   0.0    1.4  1  BAR_3_WASP_bdg  WASP-binding domain of Sorting nexin protein
      0.083   12.9   0.0        2.1    8.5   0.0    2.7  2  PAS_8           PAS domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.6   0.1   1.9e-31   2.9e-28       1     110 [.     737     846 ..     737     848 .. 0.92

  Alignments for each domain:
  == domain 1  score: 98.6 bits;  conditional E-value: 1.9e-31
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEET CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesep 98 
                 gd+ r+rqi+ nlv+Na+kf t +g+++++++ s+d+ +i v+D+G+G+++e + +lfe+f q d+st+r +ggtGlGl+i+++l+ +mgG++ ++s+ 
  KKY16401.1 737 GDSGRVRQILTNLVSNAIKF-TAEGSVHLSVTLSDDTARIVVKDTGCGMDRETQARLFEPFRQgDSSTARVYGGTGLGLTISQNLAHMMGGQLALQSSV 834
                 799*****************.666655555554488*************************************************************** PP

                 TTEEEEEEEEES CS
   HATPase_c  99 grGttftftlpl 110
                 g Gt  tft+pl
  KKY16401.1 835 GVGTIATFTMPL 846
                 *********997 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.1   2.2e-27   3.2e-24       1     110 [.     878     992 ..     878     994 .. 0.95

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 2.2e-27
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHH.HHHHESEEEEESSCSSSEHHHHHHHHHHCT.....TTSEEEEEESSTSHHHHHHHHH CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealell.keekvdlillDinmpgmdGlellkeireed.....pelpviiltahseeedavealk 91 
                   vliv+D+p+++++  + +++ gy + +++++g+eal++l + +k+d+il+D++mp +dG+e+++++r+++     +++p+i+lta + + d +++ +
    KKY16401.1 878 VLIVEDNPINQKIALNSVKKLGY-QATAVTNGREALQHLsQVQKIDVILMDVQMPVLDGYETTRTLRTHKsfehlKSIPIIALTASAIKGDNEKCEE 973
                   8**********************.9999**********966677*************************99988889******************** PP

                   CTESEEEESSG-HHHHHHH CS
  Response_reg  92 agaddflsKpfdpeeLlka 110
                   ag+dd+lsKp+  ++L ++
    KKY16401.1 974 AGMDDYLSKPYPLRALGEK 992
                   **********999988765 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.1   1.3e-17     2e-14       3      87 ..     383     466 ..     382     468 .. 0.96

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 1.3e-17
       PAS_3   3 yvserveeilGyspeellgkveswldlvhpeDrervrealqealkkge.pyegeyRirrkdGeyrwveararvirdengkpvrvig 87 
                 y s+ ++e +G+s+e+ +++   w  ++hp+D++ + +++ ++ + ge  ++ge R+rr dG yrw+  r+++++ ++g++ ++ g
  KKY16401.1 383 YFSKGWYEFTGLSREDSIQQ--GWQAVLHPDDLSSLLTQWSKYKEAGEdLFTGEGRYRRHDGVYRWMAIRVNPLKLDSGRVPKFYG 466
                 7899****************..**************************788******************************99987 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0033         5       5      58 ..      22      85 ..      19     153 .. 0.62
   2 !   19.8   0.0   4.6e-07   0.00069       5     102 ..     373     471 ..     369     473 .. 0.85
   3 ?   -1.3   0.0       1.7   2.6e+03      72     104 .]     570     608 ..     522     608 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0033
       PAS_9  5 lidnpdgrilyaNeaalrllGyspeevlgksitdlf..........vtdpeanerlraaleqgr 58
                l++ p  +++ aN+aa+rl+G +      ks++ ++             +++ ++++ +l+  +
  KKY16401.1 22 LVVSPRRKVVLANDAARRLFGGKLGNTCKKSWRRFLlgvgiaelpiRIRDSDINFEQTYLRLSD 85
                55668999*************8866666666666665555555556444444444444444444 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 4.6e-07
       PAS_9   5 lidnpdgril.yaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrk...kerevevvlirkngetfwvlltaspvkdddgelvgiivil 99 
                 +   ++g +  y+++++ +++G s+e+ +++ +  ++  +p++ + l  ++   ++     +++e  ++r +g + w  +++ p+k d+g++  + + l
  KKY16401.1 373 WTSVSNG-LCdYFSKGWYEFTGLSREDSIQQGWQAVL--HPDDLSSLLTQWSKYKEageDLFTGEGRYRRHDGVYRWMAIRVNPLKLDSGRVPKFYGSL 468
                 5544788.888**************************..5555555555555555599999************************************** PP

       PAS_9 100 rDi 102
                 +Di
  KKY16401.1 469 TDI 471
                 **9 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.7
       PAS_9  72 ngetfwvlltaspv...kdd.dgelvg..iivilrDite 104
                 ++   ++++  +++   +d+ +g lv   +i+++ Dit+
  KKY16401.1 570 SEDHCFNRVIRTRFmpdFDTsNGVLVVkgVIGCVMDITD 608
                 444555555555555666665555555779999999996 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00054      0.81       7      35 ..      14      42 ..       9      57 .. 0.85
   2 !   19.4   0.0   5.5e-07   0.00082       4     113 .]     362     471 ..     359     471 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00054
                HHHSSSEEEEEETTSBEEEECHHHHHHHS CS
         PAS  7 leslpdpifvvDedgrilyvNaaaeellG 35
                +e l  p++vv  + +++++N+aa++l+G
  KKY16401.1 14 FEELKLPCLVVSPRRKVVLANDAARRLFG 42
                5667779*********************9 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 5.5e-07
                 HHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEECTTSSEEEEEEEEEEEEETTEE CS
         PAS   4 raileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfklrdgrpihlevraspvrdagge 102
                 ++i + +p  ++    +g + y+++ + e++Glsre+ + +    ++h++d + l  + +++ e+ge+  +ge + ++ dg ++++ +r++p+   +g+
  KKY16401.1 362 ESICDRMPHIVWTSVSNGLCDYFSKGWYEFTGLSREDSIQQGWQAVLHPDDLSSLLTQWSKYKEAGEDLFTGEGRYRRHDGVYRWMAIRVNPLKLDSGR 460
                 5666667777777779****************************************************************************9999998 PP

                 EEEEEEEEEES CS
         PAS 103 ilgflgvlrdi 113
                 +  f g l di
  KKY16401.1 461 VPKFYGSLTDI 471
                 87777766665 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0009       1.3       1      46 [.      14      59 ..      14      70 .. 0.87
   2 !   13.9   0.0   3.3e-05     0.049      25     107 ..     389     473 ..     377     476 .. 0.84
   3 ?    1.6   0.0      0.22   3.3e+02      51     107 ..     552     608 ..     542     611 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0009
       PAS_4  1 ldslpdalavldpdgrvlyaNaaaaelfgappeellGktlaellpe 46
                ++ l  +++v++p  +v+ aN aa++lfg        k+++ +l  
  KKY16401.1 14 FEELKLPCLVVSPRRKVVLANDAARRLFGGKLGNTCKKSWRRFLLG 59
                67888999**********************9999999999887765 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 3.3e-05
       PAS_4  25 aelfgappeellGktlaellpeedaarleralrrvlegeepiefleelll..pgeerhyelrllPlrdesGevigvlvisrDiTe 107
                  e  g+++e+ + + ++ +l ++d   l +++ +  e +e +++ e + +  +g  r++ +r++Pl+ +sG+v  +++ ++Di +
  KKY16401.1 389 YEFTGLSREDSIQQGWQAVLHPDDLSSLLTQWSKYKEAGEDLFTGEGRYRrhDGVYRWMAIRVNPLKLDSGRVPKFYGSLTDIED 473
                 5566788888888899999999999999999999999999888877555569******************************976 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.22
       PAS_4  51 rleralrrvlegeepiefleelllpgeerhyelrllPlrdesGe...vigvlvisrDiTe 107
                  +e+ lr++++g+  +++ e + +    r++ +r++P +d+s +   v gv++ + DiT+
  KKY16401.1 552 SFESKLREAMTGNVEYTTSEDHCF---NRVIRTRFMPDFDTSNGvlvVKGVIGCVMDITD 608
                 689999******999999999999...9999******99999994545688999999987 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.1   2.6e-08   3.9e-05      19      66 ..     643     689 ..     642     690 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 2.6e-08
                 HHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA  19 ailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66 
                 +++g++++L ++ +l+ +++++++ i+ +ar l+ +v+d+Ld+s+iea
  KKY16401.1 643 GVIGMSDLLAET-NLNMSQQDLVDCIQMSARNLLIIVNDILDFSKIEA 689
                 799******885.99*******************************98 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.9e-08   2.9e-05       6      93 ..     745     833 ..     741     875 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.9e-08
  HATPase_c_3   6 AlaelvdNsldAdae.nvkievnknrgktgeivieDdGkGmseeelknalrlatsskeakrkstslGkkGiGlklA...slslgkkltvitk 93 
                   l+ lv N++   ae +v+++v   + +t++iv++D G Gm++e+  + +++ ++  +  ++++++G  G+Gl  +   ++++g +l + ++
   KKY16401.1 745 ILTNLVSNAIKFTAEgSVHLSVTLSD-DTARIVVKDTGCGMDRETQARLFEPFRQGDS--STARVYGGTGLGLTISqnlAHMMGGQLALQSS 833
                  5889*******777635777777764.689********************99888888..59**********97764444666666666654 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.7e-05     0.071      39     108 ..     745     820 ..     714     825 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.7e-05
  HATPase_c_2  39 actNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep......keslkegGrGlalikgl 108
                  ++tN v  a +   eg+v+++++ ++++ +++v+D G g d et+++  e+        +      G+Gl + ++l
   KKY16401.1 745 ILTNLVSNAIKFTAEGSVHLSVTLSDDTARIVVKDTGCGMDRETQARLFEPFRqgdsstARVYGGTGLGLTISQNL 820
                  4566666666666679***********************9999887765544367675444455556666665555 PP

>> MLTR_LBD  MmyB-like transcription regulator ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012      0.18      15      43 ..      19      45 ..      15      68 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
    MLTR_LBD 15 vPAlVldrrwdvlaaNraaraLlgdpaal 43
                 P lV+++r  v+ aN+aar+L+g+  +l
  KKY16401.1 19 LPCLVVSPRRKVVLANDAARRLFGG--KL 45
                79**********************9..34 PP

>> BAR_3_WASP_bdg  WASP-binding domain of Sorting nexin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011      0.16      72     175 ..     527     631 ..     516     667 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
  BAR_3_WASP_bdg  72 gplkkeyqkiGkafkalsqafevdeqvassaLneala....atgktYeeigevfaeqpkkDleflletleeYkGllanfPDiigvhkgalekvke 162
                       ++k++++ G+ f +l++  e     ++s+L ea++    +t+++ +    v+  +   D++  ++   + kG+++++ Di ++h +a     +
      KKY16401.1 527 ETFRKQWER-GNVFDNLAAIHEGGLPSFESKLREAMTgnveYTTSEDHCFNRVIRTRFMPDFDT-SNGVLVVKGVIGCVMDITDIHESAKLESEN 619
                     569999998.**************************9222234444444555555555555544.3334478***************99777777 PP

  BAR_3_WASP_bdg 163 sdklveegklsse 175
                     + +l ++++++ e
      KKY16401.1 620 A-RLIAHEQVARE 631
                     6.66666666543 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0014       2.1      15      35 ..      22      42 ..      11      71 .. 0.76
   2 ?    1.0   0.0      0.31   4.6e+02      10      43 ..     368     402 ..     360     423 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0014
       PAS_8 15 avvdlgdrivdvNqaalellG 35
                +vv   +++v +N+aa +l+G
  KKY16401.1 22 LVVSPRRKVVLANDAARRLFG 42
                45543346************9 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.31
       PAS_8  10 spdgiavvd.lgdrivdvNqaalellGys.adlkge 43 
                 +p  ++    +g  + +  + ++e++G+s +d++ +
  KKY16401.1 368 MPHIVWTSVsNGL-CDYFSKGWYEFTGLSrEDSIQQ 402
                 5555664222555.9999999******995544432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1006 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.47
# Mc/sec: 6471.19
//
Query:       KKY16402.1  [L=403]
Description: hypothetical protein UCRPC4_g05911 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-72  241.4   0.2    8.9e-72  241.4   0.2    1.5  2  DUF2401   Putative TOS1-like glycosyl hydrolase (DUF2401)
    2.5e-08   34.2   0.2    6.5e-08   32.9   0.0    1.8  2  DUF2403   Glycine-rich protein domain (DUF2403)


Domain annotation for each model (and alignments):
>> DUF2401  Putative TOS1-like glycosyl hydrolase (DUF2401)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1      0.55     5e+03      37      57 ..     124     144 ..     107     159 .. 0.48
   2 !  241.4   0.2     1e-75   8.9e-72      13     229 .]     179     390 ..     172     390 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.55
     DUF2401  37 algnslsyassdgtsgasspt 57 
                 +++++ + a+++ +++++++t
  KKY16402.1 124 CYHTATTTAKASTKASSATST 144
                 444444444433333333332 PP

  == domain 2  score: 241.4 bits;  conditional E-value: 1e-75
     DUF2401  13 sgtaenlvFlnnkggksgsGvfdsalgnslsyassdgtsgassptvledvllssnkEiiifsdkkCe.dkdCgyyregivayhGfgGakkvflfefsmp 110
                 ++++ +  Fln++gg +gsGv+ds +gnslsyas d+  g+++p++++++l  ++ E++++sdk+C  d+ Cg++r+g+va++Gf+ ++ +fl+efsmp
  KKY16402.1 179 RKNSVGFAFLNHNGG-QGSGVWDSEFGNSLSYASRDAERGSATPQIFDGHLE-DGVELVVMSDKECGsDDFCGFSRPGTVAHQGFDNSEALFLMEFSMP 275
                 56778999*******.99*****************************99876.9************98889**************************** PP

     DUF2401 111 edkksssnkdmPAiWlLnakiprtaqYpgnaeCsCwksgCGelDifEvlesgseklkstlhtaqgaegggssdyfeRptdetikvavvfdseestvkiv 209
                  ++k+++n d+PAiW+Lna+iprt qY g+aeCsCw+sgCGe+DifEvl+++++++kst h ++  ++ggss +f+Rp + + k++v+f+++++ v+i 
  KKY16402.1 276 ITNKTGWNMDTPAIWILNAQIPRTLQY-GKAECSCWSSGCGEMDIFEVLDAANTRMKSTWHGDD--DSGGSSYWFKRPQT-SRKAGVLFSESNEAVTIF 370
                 ***************************.79*********************************9..58**********87.789*************** PP

     DUF2401 210 elddstdfdeslsaetvesl 229
                  l d++df+++++a+ + ++
  KKY16402.1 371 YLPDDVDFSSDIDATAIVEW 390
                 *************9998777 PP

>> DUF2403  Glycine-rich protein domain (DUF2403)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   7.3e-12   6.5e-08      24      62 ..       3      43 ..       1      44 [. 0.92
   2 ?   -3.7   0.1       1.9   1.7e+04       5      24 ..     116     135 ..     116     144 .. 0.68

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 7.3e-12
     DUF2403 24 sgeCeteeksfsGplaPld..eelSvhfRGPlkLkqfavYt 62
                +geC++e + f+ +l+ +   ++lS+hfRGPl+L+qfa+Yt
  KKY16402.1  3 QGECSSEAQVFNSSLGSIGsgNDLSWHFRGPLQLDQFAYYT 43
                79**************9986689*****************7 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.9
     DUF2403   5 ytnvggsGsYkeVtsmdess 24 
                 y+nv  s  Y++ t   ++s
  KKY16402.1 116 YSNVPSSVCYHTATTTAKAS 135
                 78888888888777666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 2525.01
//
Query:       KKY16403.1  [L=791]
Description: putative mfs allantoate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-29  101.6  23.7    6.7e-29  100.9  23.7    1.4  1  MFS_1         Major Facilitator Superfamily
    1.2e-14   54.8  14.4    1.2e-14   54.8  14.4    2.2  2  KRE9          Yeast cell wall synthesis protein KRE9/KNH1
    9.9e-11   42.3   0.6    2.9e-10   40.8   0.6    1.9  1  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc
    1.8e-06   27.5  10.7    1.8e-06   27.5  10.7    1.6  2  MFS_4         Uncharacterised MFS-type transporter YbfB


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9  23.7   1.5e-32   6.7e-29       1     353 []      70     415 ..      70     463 .. 0.87

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 1.5e-32
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlg 98 
                 l++++++ +++ ++l++a+   +++dl++ ++++++l ++++lg+++ ++p+ +l +r+   ++l + +++++++ l+l  a +s+ ++lvlr+l+G++
  KKY16403.1  70 LAVCYAFFYIDKTTLSFAAIFGIKDDLNLHGTQYSWLSSMFYLGFLFWAFPTNFLLQRLPIGKYLGANIFAWGFF-LILQAAcNSFKTILVLRFLAGAA 167
                 5789***************99**************************************9999************.77775546666************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpeepperkrkspkeeekgtgp 193
                 ++++ pa + +++ w+++++++  ig+++++++ G++lg llg  + ++ g    W + f++++ +++ +        ++ ++ r +++++e     ++
  KKY16403.1 168 EACSDPAFMLITSMWYTRKQQPVRIGIWYLANGGGIALGGLLGFGIGHLKGalpsWKYEFVVIGSLCCAW-----GRRLAVHRLRDNQTGVEN----KH 257
                 ******************************************9999988889999***************.....778888888999999999....99 PP

       MFS_1 194 aplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrls.drlgrrrrlllallllllaalgl 291
                  ++ +  k+ ++d  l +++i  +++ + + g++ + +l+  + +g+s   l+++l+ +++ v+++l++l+  l+ dr+ +rr l++ ++l+  ++ ++
  KKY16403.1 258 LKWYQ-VKEAFSDVKLPLFFILGVVGNIPNGGISNFGTLI-IKGFGFS--TLGTTLMQVPYGVFIALSILTCVLInDRIENRRCLMILIFLCPNISGAF 352
                 99999.9999999988646666666666888899999996.*******..888889**********************998777777777776666666 PP

       MFS_1 292 allavt.ssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                  l  v+ +++v  ++ ++l G   + ++ +l  ++++ a+  +    +++  + ++ g + gp
  KKY16403.1 353 GLRYVAqHHKVGRYICYLLTGPYNAAFVLILSLQIANTAGHTKKVVTNAALFLGYCTGNIAGP 415
                 666666356666665555555577777778888888888766666677777777778887776 PP

>> KRE9  Yeast cell wall synthesis protein KRE9/KNH1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.84   3.8e+03      42      65 ..     636     659 ..     632     678 .. 0.74
   2 !   54.8  14.4   2.8e-18   1.2e-14       3      83 ..     700     780 ..     698     788 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.84
        KRE9  42 avtyystlkksleqltTiTpgwsy 65 
                  vt ys+  + +e+++T T   + 
  KKY16403.1 636 TVTAYSDRFTLTEMTSTFTNEIQS 659
                 578888888888888888876654 PP

  == domain 2  score: 54.8 bits;  conditional E-value: 2.8e-18
        KRE9   3 ksftvpYtkQtgktrfAPmQtqPgtkvtattwsrrfptsavtyystlkksleqltTiTpgwsytltsavNyatpapfpsen 83 
                  sf+v+Yt Qtg+tr+APm + P t +ta++ s+++ptsa+t  +t+ +++ q+ T T + + t++s  N+a++a+ p++ 
  KKY16403.1 700 GSFAVAYTLQTGQTRYAPMPSIPPTSITAKSASMKYPTSAFTIATTYLSTPYQIFTTTDSQTWTTSSMENTASAAAAPTDT 780
                 69****************************************************************************985 PP

>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.6   6.5e-14   2.9e-10       1      93 []     543     646 ..     543     646 .. 0.82

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 6.5e-14
  GPI-anchored   1 tsPssgevvtagkpvtitWkdsgtdp.....gtvtlvLcagssnn.lksvktiasgiknsd...gsytwtvpaslesggaYflqiv.sesne.giyn 86 
                   t+P++g++ +a++++ i+W+ds+++p     +t++l L+ g++++  + + t++s+ k sd    + t++v+ +  +++a+fl++v   +++ ++++
    KKY16403.1 543 TEPAAGSTKDATSTLSIKWEDSEDSPsisqlSTYQLFLVGGGNDEsKQVISTLVSDGKFSDgnvATSTVNVSLGGLDTNAWFLKMVaGAAQGgTVTA 639
                   78*******************9954566667************6625555999999998886555567777777778889******76777799*** PP

  GPI-anchored  87 ySdrFti 93 
                   ySdrFt+
    KKY16403.1 640 YSDRFTL 646
                   *****96 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5  10.7     4e-10   1.8e-06      22     336 ..      95     420 ..      89     447 .. 0.77
   2 ?   -3.2   0.0      0.86   3.9e+03     149     203 ..     525     579 ..     512     582 .. 0.63

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 4e-10
       MFS_4  22 egqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAv....vlvfgsslvlahaaaarre 116
                 +++l  +q ++l ++ ylG+L  a+   f l++ +    l a ++a    l+  a+ +sf ++l++RflaG a A+     + ++s++  ++    +++
  KKY16403.1  95 DLNLHGTQYSWLSSMFYLGFLFWAFPTNFLLQRLPIGKYLGANIFAWGFFLILQAACNSFKTILVLRFLAGAAEACsdpaFMLITSMWYTRK----QQP 189
                 6788889******************9999999888888899999*****************************9963332566677777666....555 PP

       MFS_4 117 rvgallfaGvGlGiavsgllvllllqlglsassl...WlalavlsavllllvalllpraalreasaaaeaakaeqkslpllalllaYglaGfGYii... 209
                   +++ +   G Gia++gll   + +l+ +  s+    ++++ l  +    +a+ + r++++  +++  +  + ++ ++ ++l l + l  +G i+   
  KKY16403.1 190 VRIGIWYLANGGGIALGGLLGFGIGHLKGALPSWkyeFVVIGSLCCAWGRRLAVHRLRDNQTGVENKHLKWYQVKEAFSDVKLPLFFILGVVGNIPngg 288
                 5688999999***********99999998888774444455555544444444444444444444444444566778899999999999999***9443 PP

       MFS_4 210 tatFlvaiardgaggalleallWllvGlaaivgvlvwlrvakrsglrralaaall....ieavgvllsllspsplglivssvllGltflaita.lvlql 303
                 +  F  +i++  + + l + l+ + +G+ +++++l    +++r ++rr+l + +     i ++  l  ++ +  +g  +  +l+G    a +  l lq+
  KKY16403.1 289 ISNFGTLIIKGFGFSTLGTTLMQVPYGVFIALSILTCVLINDRIENRRCLMILIFlcpnISGAFGLRYVAQHHKVGRYICYLLTGPYNAAFVLiLSLQI 387
                 478999999998999999999999**************************98764222245555567788999999********987766554166777 PP

       MFS_4 304 arelappatrrllglmTasfgigQilGpllasl 336
                 a      ++  + +++ + + +g i+Gp     
  KKY16403.1 388 ANTAGHTKKVVTNAALFLGYCTGNIAGPFFYKT 420
                 76655555577888999***********87655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.86
       MFS_4 149 slWlalavlsavllllvalllpraalreasaaaeaakaeqkslpllalllaYgla 203
                 s Wl++++l  +l    ++   ++++++a + +  + + +++ p +  l +Y l+
  KKY16403.1 525 SFWLLAGLLPHALAYPKFTEPAAGSTKDATSTLSIKWEDSEDSPSISQLSTYQLF 579
                 3577777777777766666666667777777766666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.48
# Mc/sec: 4906.81
//
Query:       KKY16404.1  [L=472]
Description: putative glutamate 5-kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-39  135.3   1.7    4.3e-39  134.6   1.7    1.3  1  AA_kinase  Amino acid kinase family
    7.8e-17   61.0   0.3    6.6e-16   58.0   0.0    2.3  2  PUA        PUA domain


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   1.7   4.8e-43   4.3e-39       2     240 ..       8     236 ..       7     237 .. 0.94

  Alignments for each domain:
  == domain 1  score: 134.6 bits;  conditional E-value: 4.8e-43
                 EEEEEE-TTCCCCTCC.....HHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHH CS
   AA_kinase   2 rvVvKlGGssltdkee.....aslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaalla 95 
                 ++V+KlG ss+ d+++     + l  ++e   +l+++g+++v+V++g +++ gl +   ++++++++            + + +ala++g+  + +l++
  KKY16404.1   8 TIVIKLGTSSIVDEKThepilSILTLIVETAVKLRKHGHRVVIVSSG-AIGVGLRRM--DIEKRPKH------------LPKVQALAAIGQCRLISLWD 91 
                 69*******999888889***************************99.999999999..********............6788**************** PP

                 TTHGEEEE-GGGTCEECCCE..HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCC CS
   AA_kinase  96 aglpavglsaaaldateagrdegsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydadpkkvp 194
                 ++++    ++a++++t++++    d++ + + ++++ ell+++v+p+++++++l + +   +g++Dt++a+ A++++Ad+l ++tdVd +yd++p+ +p
  KKY16404.1  92 SLFAHLRQPVAQILLTRNDI---ADRTQYINAQNTLSELLSMDVIPIVNENDTLAVSEI-KFGDNDTLSAITAAMIHADYLFLMTDVDCLYDSNPRTNP 186
                 ********************...*****************************9999987.59************************************* PP

                 TTCECCEE.EHHHCHH....CSSS.TTTHHHHCHHHHHHHHHCTT-EEEEE CS
   AA_kinase 195 darllpei.svdeaee....saselatgGmkvkhpaalaaarrggipvvIt 240
                 +a++++ + ++ ++ +      s l+tgGm +k+ aa  a   g + ++It
  KKY16404.1 187 NAKPIEVVsDIGSLTAdvssAGSALGTGGMGTKIVAARLATSAG-VTTIIT 236
                 ******99545555558898999********************9.888887 PP

>> PUA  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1     0.089     8e+02      34      55 ..      45      64 ..      34      68 .. 0.81
   2 !   58.0   0.0   7.4e-20   6.6e-16       3      74 .]     319     418 ..     317     418 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.089
                TSEEEEEETTSCEEEEEEESS- CS
         PUA 34 gdvVaivdedgelvavGlanys 55
                g  V+iv+    +++vGl +++
  KKY16404.1 45 GHRVVIVSS--GAIGVGLRRMD 64
                677888888..89*****9998 PP

  == domain 2  score: 58.0 bits;  conditional E-value: 7.4e-20
                 EEE-HHHHHHHHTT-EEEGGGEEEEETT--TTSEEEEEETTS............................CEEEEEEESS-HHHHHHHCTSEEEEEEEE CS
         PUA   3 vvvddgAvkallsgasLlapGvvevegdfeegdvVaivdedg............................elvavGlanysseelakikggksveierv 73 
                 + +d+gA +all++a Ll+ Gvv+v+g+f +++ V+i+  d+                            e+v+++++nyss+e+++ikg +s +i +v
  KKY16404.1 319 LYIDRGALNALLQKAGLLPVGVVGVDGHFAQQEAVRICVVDRptptskslalngdfvdhplptsalfskaEEVGRAVVNYSSSEIERIKGIRSSQITNV 417
                 78**************************************88899999999999*****************************************9988 PP

                 E CS
         PUA  74 l 74 
                 l
  KKY16404.1 418 L 418
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 3132.07
//
Query:       KKY16405.1  [L=286]
Description: putative serine threonine-protein kinase eg2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-72  242.2   0.0      7e-72  242.0   0.0    1.0  1  Pkinase        Protein kinase domain
      7e-44  150.0   0.0      9e-44  149.7   0.0    1.1  1  Pkinase_Tyr    Protein tyrosine kinase
    3.5e-07   29.8   0.0    1.4e-05   24.6   0.0    2.1  2  Kinase-like    Kinase-like
    3.2e-05   23.4   0.1    5.5e-05   22.6   0.1    1.3  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.012   14.5   0.0      0.015   14.3   0.0    1.1  1  Haspin_kinase  Haspin like kinase domain
      0.018   14.6   0.0       0.18   11.4   0.0    1.9  2  RIO1           RIO1 family
      0.027   14.4   0.0      0.062   13.2   0.0    1.6  1  APH            Phosphotransferase enzyme family
      0.068   12.8   0.1       0.15   11.7   0.1    1.6  2  FTA2           Kinetochore Sim4 complex subunit FTA2
      0.087   12.3   0.1       0.18   11.3   0.1    1.6  1  YrbL-PhoP_reg  PhoP regulatory network protein YrbL


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.0   0.0   3.5e-75     7e-72       3     264 .]      12     263 ..      10     263 .. 0.93

  Alignments for each domain:
  == domain 1  score: 242.0 bits;  conditional E-value: 3.5e-75
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHH CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeea 100
                   + lG+G+fG+Vy a+ek+tg   A+K++ k++ ++ k  k+v+rEi+i  +l+hpni+rly+ f+++++++l+le++ +gel ++l+++  ++e++a
  KKY16405.1  12 IGKPLGKGKFGRVYLAREKSTGFVCALKVLHKSELQQGKVeKQVRREIEIQSNLRHPNILRLYGHFHDSKRIFLILEFAGKGELYKILRKEERFPEWKA 110
                 6789*****************************988877779********************************************************* PP

                 HHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH....TTSCBSHHHHHHHHHHHHHHHHHSS- CS
     Pkinase 101 kkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvl....keneyskkvDvWslGvilyelltgkp 195
                  ++++q++++l+ylH+k+++HrD+KpeNiL+  +ge+Ki+DFG + ++ ++   ++++gt +Yl+PE+l    ++n y++kvD+WslGv+ ye+l g+ 
  KKY16405.1 111 AQYIAQMAAALKYLHRKHVMHRDIKPENILVGIHGEIKISDFGWSVHAPNNR-RKTMCGTLDYLPPEMLkpgtSDNYYDEKVDLWSLGVLTYEFLVGQA 208
                 *************************************************988.9***************999888999********************* PP

                 STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 196 pfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 pf+   ++      ++q    ++i    + ++  +s +s+eakdl+k+ll  dp++R+  e++ qhp++
  KKY16405.1 209 PFE---DTP----VMTQ----RRIA---RGEMTIPSFVSSEAKDLIKRLLVLDPQNRIPLEDVSQHPWI 263
                 ***...333....2333....2232...3467788999******************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   0.0   4.5e-47     9e-44       3     256 ..      12     258 ..      10     260 .. 0.89

  Alignments for each domain:
  == domain 1  score: 149.7 bits;  conditional E-value: 4.5e-47
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH..HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee..keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkeke 98 
                  +gk lG+G+fG+V+ ++ k    ++   +a+K+l+++  ++   ++++ +e++i ++l+hpni++l+g   +++++++++e++ +G+L k Lrk+  e
   KKY16405.1  12 IGKPLGKGKFGRVYLAREK----STGFVCALKVLHKSELQQGkvEKQVRREIEIQSNLRHPNILRLYGHFHDSKRIFLILEFAGKGELYKILRKE--E 103
                  7899************999....89999******6655444334789999********************************************8..9 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE....EEHHHHHHHHH CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk....ftsksDvWsfG 192
                  ++   +  ++++q+A++++yL++k+++Hrd+   N+L+  +  +kisDfG + +       +++++    + +++pE+lk ++    + +k D Ws G
   KKY16405.1 104 RFPEWKAAQYIAQMAAALKYLHRKHVMHRDIKPENILVGIHGEIKISDFGWSVHA---P-NNRRKTMCGTLDYLPPEMLKPGTsdnyYDEKVDLWSLG 197
                  99*************************************************9988...3.334455567899******997777777*********** PP

                  HHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 193 vllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselv 256
                  vl++E +  g+ p+++   ++  ++  ++ +++ p+ +++e ++l+k+ +  dp++R  ++++ 
   KKY16405.1 198 VLTYEFLV-GQAPFEDTPVMT--QRRIARGEMTIPSFVSSEAKDLIKRLLVLDPQNRIPLEDVS 258
                  *****998.*****9987655..455566789*************************9999876 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.021        41      17      59 ..      13      55 ..       9      70 .. 0.77
   2 !   24.6   0.0   7.1e-09   1.4e-05     141     259 ..     107     218 ..      93     251 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.021
  Kinase-like 17 gellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerl 59
                 g++l+kg+++ v++++++ tg   a+kv    +    k  +++
   KKY16405.1 13 GKPLGKGKFGRVYLAREKSTGFVCALKVLHKSELQQGKVEKQV 55
                 689***********************99776664444444444 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 7.1e-09
  Kinase-like 141 letiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWql 236
                  + + a +++ +q+     +L+ k ++h +++++n+l   +g +++ +f+  v a ++ +  +++    + PpE+l   g+        +  k+d W l
   KKY16405.1 107 EWK-AAQYI-AQMAAALKYLHRKHVMHRDIKPENILVGIHGEIKISDFGWSVHAPNNRR-KTMCgtLDYLPPEMLKP-GT----SDNYYDEKVDLWSL 196
                  444.44555.67888889************************************99999.6666345688*****98.44....5678899******* PP

  Kinase-like 237 GlviyriwclklPltlateeake 259
                  G+  y     ++P++   + + +
   KKY16405.1 197 GVLTYEFLVGQAPFEDT-PVMTQ 218
                  *************9754.44433 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   2.7e-08   5.5e-05      98     165 ..      88     151 ..      76     166 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.7e-08
         Kdo  98 rlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliD 165
                 + +g  +L ++l+k ++++e + ++ + + +++ + lhr +v+H+d+ + nil+  ++    ei + D
  KKY16405.1  88 EFAGKGELYKILRKEERFPEWKAAQYIAQMAAALKYLHRKHVMHRDIKPENILVGIHG----EIKISD 151
                 5677888999999977799999********************************9887....555555 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   7.5e-06     0.015     167     259 ..      61     161 ..      27     188 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.5e-06
  Haspin_kinase 167 lqdkvlkek.....pdfyseqqlflvlllkdkGtdLeev....klkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlkl 253
                    +q+++ + +       f +++++fl+l++  kG+  + +    ++ +wk a+ i  q+++ L+    k    HRd++ +niLv  ++++ + d+  
     KKY16405.1  61 IQSNLRHPNilrlyGHFHDSKRIFLILEFAGKGELYKILrkeeRFPEWKAAQYIA-QMAAALKYLHRKH-VMHRDIKPENILVGIHGEIKISDFGW 154
                    34444444466666789999*************75443355568999*9999985.8999999998885.56*********************988 PP

  Haspin_kinase 254 sRle.ss 259
                    s    ++
     KKY16405.1 155 SVHApNN 161
                    7655444 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.14   2.9e+02       2      44 ..      24      67 ..      23      78 .. 0.77
   2 ?   11.4   0.0   8.9e-05      0.18      79     159 ..      81     162 ..      75     167 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.14
                EEEEEETTTE.EEEEEEE-S---SS-HHHHCTTTSTTSTCG--G CS
        RIO1  2 Vyhavsedgk.evaiKiyktstteFkkrkkyvsgekrfkdrksk 44
                Vy a+++++   +a+K+   s ++  k++k+v +e + +++  +
  KKY16405.1 24 VYLAREKSTGfVCALKVLHKSELQQGKVEKQVRREIEIQSNLRH 67
                8888874444499****999999999999999999887766555 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 8.9e-05
                 ETTEEEEE--EETTEEGGBHHHCG-..HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GTTEEETTSTT CS
        RIO1  79 krhvlvmefigedgvaapklkdvee..eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvsQaveldhpn 159
                 kr  l++ef g +g  ++ l++ e+  e +a+++ +++ ++  k +++ ++ H D+   N+lv    ++ i D++ +v++ +++
  KKY16405.1  81 KRIFLILEFAG-KGELYKILRKEERfpEWKAAQYIAQMAAA-LKYLHRKHVMHRDIKPENILVGIHgEIKISDFGWSVHAPNNR 162
                 56679999999.66666666666645566777777777775.556669***************9888********999877665 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.1e-05     0.062     137     181 ..     104     142 ..      87     159 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.1e-05
                 CGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC CS
         APH 137 laselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvd 181
                 + +e++      ++  +a++aa l    ++ ++H+D++p N+lv 
  KKY16405.1 104 RFPEWKA-----AQ-YIAQMAAALKYLHRKHVMHRDIKPENILVG 142
                 3334444.....33.44444444444569**************97 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       0.9   1.8e+03      29      62 ..      15      50 ..       9     101 .. 0.62
   2 ?   11.7   0.1   7.5e-05      0.15     171     206 ..     107     142 ..      50     155 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.9
        FTA2 29 yLgkglhsiVlkvkirgk..eYALKlFrfleaeele 62
                 Lgkg  ++V+ ++ +    + ALK+  + e ++ +
  KKY16405.1 15 PLGKGKFGRVYLAREKSTgfVCALKVLHKSELQQGK 50
                677777777777766665335577766555433322 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 7.5e-05
        FTA2 171 eelevsqlpkllrdlkklhklgIvvrDlkeenyidg 206
                 e +  +++ ++   lk lh+ ++++rD+k+en++ g
  KKY16405.1 107 EWKAAQYIAQMAAALKYLHRKHVMHRDIKPENILVG 142
                 556778999***********************9865 PP

>> YrbL-PhoP_reg  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   8.9e-05      0.18     106     155 ..      94     144 ..      36     152 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.9e-05
  YrbL-PhoP_reg 106 nvaktLedlvkkeelta.elkeaLdefleelldnhivtndlsakNivvkkn 155
                    ++ k L++  +  e +a ++  ++ + l++l   h++ +d++++Ni+v+ +
     KKY16405.1  94 ELYKILRKEERFPEWKAaQYIAQMAAALKYLHRKHVMHRDIKPENILVGIH 144
                    44555555555445444488899999*********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2014.55
//
Query:       KKY16406.1  [L=285]
Description: putative type 2a phosphatase activator tip41 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-71  239.4   0.1      2e-71  239.0   0.1    1.1  1  TIP41     TIP41-like family


Domain annotation for each model (and alignments):
>> TIP41  TIP41-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.0   0.1   1.1e-75     2e-71       1     171 [.      70     246 ..      70     247 .. 0.97

  Alignments for each domain:
  == domain 1  score: 239.0 bits;  conditional E-value: 1.1e-75
       TIP41   1 mvFgnnlleleheksgvklefnaldaLkavkkeeee..kvayakewkksrkkk...kevvkpyDwtytteYkGtl.eeklkveeteeeiplekLkrkdp 93 
                 m+Fg+n++ +eh++sg++++fna+daL++v+k+ e+  kvay+kew+ksr+++   kev+kp+Dw+ytt+YkG+l   ++++++t+++ip+e Lkr+dp
  KKY16406.1  70 MIFGDNYVMIEHQASGWSIAFNAFDALDRVDKTGEKrlKVAYSKEWHKSREDShdiKEVIKPFDWSYTTDYKGSLaPGAANFSPTSTRIPVELLKRPDP 168
                 9********************************8889*************9998999999**************9656889****************** PP

       TIP41  94 ilfydevvLyedeLadnGisllsvkvrvmpeclllLlRfflRvDnvlvrvrdtrvyvefeseevlrevkekeakyeev 171
                 i f+dev+LyedeLadnGi++ls+k+rvmp +lllL+Rff+R+Dnvlvr+ dtr+yv+f+++ev+re+ +ke++ye +
  KKY16406.1 169 INFFDEVMLYEDELADNGIAMLSCKIRVMPARLLLLQRFFMRLDNVLVRIKDTRIYVDFDQKEVIREYIAKEEDYEML 246
                 ***************************************************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 1821.57
//
Query:       KKY16407.1  [L=283]
Description: putative proteasome component pre2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-46  158.8   0.2    1.3e-46  158.5   0.2    1.1  1  Proteasome  Proteasome subunit


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.5   0.2   7.1e-51   1.3e-46       2     190 .]      66     248 ..      65     248 .. 0.97

  Alignments for each domain:
  == domain 1  score: 158.5 bits;  conditional E-value: 7.1e-51
                 HHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHCT CS
  Proteasome   2 kkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrsg 100
                 ++Gtt++++++k+g+++a+d+ratag+ + +++tv+K+++i+  ++ ++aG aaD++++  ++  +++l++lr++ +i+v+     +a+k++a++ +s+
  KKY16407.1  66 AHGTTTLAFRFKGGIIVATDSRATAGNWI-ASQTVKKVIEINSCLLGTMAGGAADCQYWLAYLGIQCRLHELRHKSRITVS-----AASKILANLVYSY 158
                 69***************************.7777***********************************************.....************9 PP

                 TTTTS.EEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEEE CS
  Proteasome 101 rrpfg.vslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievavi 190
                 +++ + ++++ agv  ++gp Ly+id +G+ ++  + +++Gsg+++a+++l++eyk dl++eea+el ++++ +a++rd++sg+ i+++++
  KKY16407.1 159 KGMGLsMGTMCAGVTPQEGPALYYIDSDGTRLSG-NLFCVGSGQTFAYGVLDAEYKYDLEDEEALELGRRSILAATHRDAYSGGFINLYHV 248
                 9877549********9999***************.7**************************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1943.45
//
Query:       KKY16408.1  [L=698]
Description: hypothetical protein UCRPC4_g05917 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-07   30.8  13.3      5e-07   29.7  13.3    1.6  1  Zn_clus     Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
        0.7   10.0   4.4         30    4.7   0.1    3.2  3  Podoplanin  Podoplanin


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7  13.3   5.6e-11     5e-07       3      37 ..      42      75 ..      40      79 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 5.6e-11
                -HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCC CS
     Zn_clus  3 CdnCrkkKvKCdakkPaCsnCkklnleCtfysess 37
                C +Cr+kK+KCd+k P C+ C++ n+ C  y++  
  KKY16408.1 42 CYECRRKKRKCDRKLPDCGLCIRTNTSCD-YTRVP 75
                9****************************.66544 PP

>> Podoplanin  Podoplanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.5    0.0071        64      71     120 ..     241     290 ..     195     301 .. 0.61
   2 ?    4.7   0.1    0.0034        30      12      42 ..     308     338 ..     304     364 .. 0.82
   3 ?    0.9   0.0     0.048   4.3e+02     103     132 ..     368     397 ..     341     400 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0071
                 XXXX-----GGG-XXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Podoplanin  71 stesvtdlrledlptaestvka.keesqstttlnvvtshstekvgeetett 120
                 +    t++++e+++t+  + +a k++sq  +++  v s+ + ++g++ +++
  KKY16408.1 241 NETGWTNEEAEEESTKPRSSRArKRKSQDFASPASVGSS-KARAGKKAQKA 290
                 667789999999999876665515566665555555443.34444444443 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0034
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Podoplanin  12 Gsaslwvlaegastvrpeddivtpgvedekv 42 
                  +aslw++ +g  ++ ++d  vt+g +++k 
  KKY16408.1 308 EQASLWAPNQGGEMISQQDTSVTSGRKSRKR 338
                 589*********************9887654 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.048
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Podoplanin 103 nvvtshstekvgeetettvekdGLatvtLv 132
                     s s + v ++t+ t +++GL+ + L 
  KKY16408.1 368 MPGQSPSNSAVANNTKRTRKNEGLNYAQLA 397
                 3345666779**************988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       906  (0.0505327); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.56
# Mc/sec: 3749.95
//
Query:       KKY16409.1  [L=576]
Description: putative tpr domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-10   40.8   5.2     0.0008   19.3   0.0    5.9  6  TPR_2     Tetratricopeptide repeat
      3e-07   30.0   0.8      0.059   13.2   0.0    5.5  6  TPR_1     Tetratricopeptide repeat
    2.1e-06   27.3   2.0       0.71    9.6   0.0    5.1  6  TPR_11    TPR repeat
    2.6e-05   24.7   5.8       0.67   10.5   0.0    5.7  6  TPR_19    Tetratricopeptide repeat
     0.0011   18.4   0.7     0.0023   17.4   0.1    1.8  2  TPR_MalT  MalT-like TPR region
     0.0012   18.8   0.2        7.3    6.9   0.0    4.8  4  TPR_7     Tetratricopeptide repeat
     0.0058   16.9   4.5        3.2    8.1   0.4    4.6  4  TPR_12    Tetratricopeptide repeat
     0.0059   16.7   0.6        6.6    7.0   0.1    3.9  3  TPR_9     Tetratricopeptide repeat
     0.0064   17.1   9.5        1.4    9.6   0.0    5.7  5  TPR_16    Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.01   16.0   0.2        7.3    7.1   0.0    4.4  4  TPR_8     Tetratricopeptide repeat
      0.023   15.5  11.2        9.7    7.3   0.1    6.5  6  TPR_14    Tetratricopeptide repeat
      0.059   13.8   4.1         58    4.4   0.1    5.7  6  TPR_17    Tetratricopeptide repeat
      0.082   13.1   1.6         43    4.4   0.1    4.3  4  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
       0.68   10.7   7.7        7.1    7.6   0.4    4.6  4  TPR_4     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   6.2e-07    0.0008       4      33 ..      29      58 ..      27      59 .. 0.96
   2 ?   -2.9   0.0       8.1     1e+04      15      30 ..      84      99 ..      81     102 .. 0.77
   3 ?   -2.5   0.0       6.4   8.1e+03      14      22 ..     137     145 ..     135     145 .. 0.80
   4 ?    1.7   0.0      0.27   3.5e+02       4      21 ..     375     392 ..     373     394 .. 0.90
   5 !   10.0   0.1   0.00061      0.78       8      31 ..     429     452 ..     429     455 .. 0.91
   6 !    6.3   0.2    0.0091        12       6      26 ..     470     490 ..     467     492 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 6.2e-07
       TPR_2  4 lynlGlayyklgdyeeAleafekAleldPn 33
                ++ +Gl++ +  ++eeA+ +fekA+ +dP+
  KKY16409.1 29 WFTRGLIWTYGFNHEEAASCFEKAVNHDPT 58
                9****************************8 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 8.1
       TPR_2 15 gdyeeAleafekAlel 30
                 d+e A++  ++A e 
  KKY16409.1 84 EDLENAIQRTRRAAEM 99
                5788899988888876 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 6.4
       TPR_2  14 lgdyeeAle 22 
                 +++y+eA e
  KKY16409.1 137 NKRYAEAME 145
                 689***975 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.27
       TPR_2   4 lynlGlayyklgdyeeAl 21 
                 +y+ G a++  g+ +eA 
  KKY16409.1 375 HYAKGVALAVIGRIKEAT 392
                 9***************96 PP

  == domain 5  score: 10.0 bits;  conditional E-value: 0.00061
       TPR_2   8 GlayyklgdyeeAleafekAleld 31 
                 G++ y++g+++ A e +e+A+ ld
  KKY16409.1 429 GELEYRKGNFQSAFEQLERAIHLD 452
                 6778*****************998 PP

  == domain 6  score: 6.3 bits;  conditional E-value: 0.0091
       TPR_2   6 nlGlayyklgdyeeAleafek 26 
                 + G +++++g  eeAl+ +e+
  KKY16409.1 470 AYGALLLEQGCTEEALRVYEA 490
                 6899***************95 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   4.6e-05     0.059       4      34 .]      29      59 ..      27      59 .. 0.92
   2 ?   -2.3   0.0       3.8   4.9e+03      12      22 ..     135     145 ..     133     145 .. 0.81
   3 ?   -1.9   0.0       2.7   3.4e+03      15      23 ..     255     263 ..     253     271 .. 0.67
   4 ?    1.2   0.0      0.28   3.6e+02       3      20 ..     374     391 ..     373     393 .. 0.90
   5 !    6.1   0.0    0.0079        10       9      31 ..     430     452 ..     428     455 .. 0.88
   6 ?    2.0   0.0      0.17   2.1e+02       8      25 ..     472     489 ..     472     490 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.6e-05
                HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  4 lynlGnayfklgkydeAleyyekALelnPnn 34
                ++ +G++  +  +++eA  ++ekA+ ++P++
  KKY16409.1 29 WFTRGLIWTYGFNHEEAASCFEKAVNHDPTC 59
                888999999999*****************86 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.8
                 HHTT-HHHHHH CS
       TPR_1  12 fklgkydeAle 22 
                 + +++y eA e
  KKY16409.1 135 MWNKRYAEAME 145
                 5689*****86 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.7
                 T-HHHHHHH CS
       TPR_1  15 gkydeAley 23 
                 g+y  A+  
  KKY16409.1 255 GDYRRAIVS 263
                 777777765 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHTT-HHHH CS
       TPR_1   3 alynlGnayfklgkydeA 20 
                 ++y +G+a+   g+ +eA
  KKY16409.1 374 THYAKGVALAVIGRIKEA 391
                 699**************9 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.0079
                 HHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   9 nayfklgkydeAleyyekALeln 31 
                  + +++g+++ A e  e+A+ l+
  KKY16409.1 430 ELEYRKGNFQSAFEQLERAIHLD 452
                 567899***************98 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.17
                 HHHHHHTT-HHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyye 25 
                 G++++++g  +eAl  ye
  KKY16409.1 472 GALLLEQGCTEEALRVYE 489
                 8899**********9887 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.44   5.7e+02      26      35 ..       4      13 ..       2      17 .. 0.79
   2 !    9.6   0.0   0.00055      0.71      10      36 ..      42      68 ..      41      71 .. 0.93
   3 ?   -3.4   0.0       6.4   8.2e+03       8      16 ..      84      92 ..      81      97 .. 0.75
   4 ?   -2.9   0.0       4.6   5.9e+03      16      27 ..     256     267 ..     255     270 .. 0.71
   5 !    8.8   0.0   0.00098       1.3       1      28 [.     429     456 ..     429     457 .. 0.91
   6 ?    3.1   0.0     0.061        78       3      30 ..     474     501 ..     472     504 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.44
      TPR_11 26 dnaeayynLG 35
                d+ ++yy LG
  KKY16409.1  4 DDDDVYYDLG 13
                6788899988 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00055
      TPR_11 10 yeeAieaYkkAlkldPdnaeayynLGl 36
                 eeA  +++kA++ dP+ a ay++L++
  KKY16409.1 42 HEEAASCFEKAVNHDPTCAMAYWGLAY 68
                69**********************985 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 6.4
      TPR_11  8 GkyeeAiea 16
                 ++e+Ai++
  KKY16409.1 84 EDLENAIQR 92
                578999985 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 4.6
      TPR_11  16 aYkkAlkldPdn 27 
                 +Y++A+  ++d 
  KKY16409.1 256 DYRRAIVSNSDA 267
                 599999777765 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.00098
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdna 28 
                 G + y +G++  A e++++A+ ld + +
  KKY16409.1 429 GELEYRKGNFQSAFEQLERAIHLDDSLP 456
                 7789*******************97766 PP

  == domain 6  score: 3.1 bits;  conditional E-value: 0.061
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaea 30 
                 ++ eqG  eeA+ +Y++ l ++ + ++a
  KKY16409.1 474 LLLEQGCTEEALRVYEADLGFNDTLPRA 501
                 6789***********9755555555555 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.058        74       6      35 ..      41      70 ..      39      70 .. 0.95
   2 ?   -1.5   0.1       2.8   3.6e+03       3      19 ..      82      98 ..      81     105 .. 0.80
   3 ?    6.3   0.0     0.011        14      12      38 ..     142     168 ..     138     169 .. 0.89
   4 ?   -1.8   0.2       3.5   4.5e+03      43      55 ..     189     201 ..     184     205 .. 0.82
   5 ?    2.5   0.1      0.16   2.1e+02       4      47 ..     435     487 ..     432     490 .. 0.70
   6 !   10.5   0.0   0.00052      0.67       1      44 [.     475     527 ..     475     530 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.058
      TPR_19  6 dyaeAlalleqalqedpknaearllLAeal 35
                +++eA++ +e+a  +dp  a a  +LA +l
  KKY16409.1 41 NHEEAASCFEKAVNHDPTCAMAYWGLAYCL 70
                689************************997 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.8
      TPR_19  3 aegdyaeAlalleqalq 19
                +++d+++A+++ ++a +
  KKY16409.1 82 DDEDLENAIQRTRRAAE 98
                678999**999999866 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.011
      TPR_19  12 alleqalqedpknaearllLAeallal 38 
                 +++e ++   p++++++ l+A+al++l
  KKY16409.1 142 EAMEGVYRRFPGDLDVATLYADALMNL 168
                 578889999***************975 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 3.5
      TPR_19  43 eAealLdalpeed 55 
                 eA+++Ld ++ +d
  KKY16409.1 189 EAKQVLDLALTQD 201
                 899**99998887 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.16
      TPR_19   4 egdyaeAlalleqalqedpk.........naearllLAeallalgqldeAeal 47 
                  g++++A + le+a+  d           ++  r ++  +ll++g ++eA ++
  KKY16409.1 435 KGNFQSAFEQLERAIHLDDSlpydepwgwMQPTRHAYGALLLEQGCTEEALRV 487
                 68999999999999877444443333455666777778888888888888766 PP

  == domain 6  score: 10.5 bits;  conditional E-value: 0.00052
      TPR_19   1 llaegdyaeAlalleq..........alqedpknaearllLAeallalgqldeA 44 
                 ll++g  +eAl+ +e+          a    p+n +a+ ++ e+l++l+++ eA
  KKY16409.1 475 LLEQGCTEEALRVYEAdlgfndtlprA-HRHPNNVWALHGYHECLVKLNRTSEA 527
                 688999999999999965444433322.669**********************9 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.8   4.9e+03      54      77 ..      84     107 ..      81     120 .. 0.60
   2 !   17.4   0.1   1.8e-06    0.0023      35     146 ..     374     489 ..     370     511 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.8
    TPR_MalT  54 GdleaAlqalqeaeklarqadslh 77 
                 +dle+A q+ + a ++a ++ ++ 
  KKY16409.1  84 EDLENAIQRTRRAAEMAMDCANTV 107
                 466666666666666665555443 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 1.8e-06
    TPR_MalT  35 dllariaatavlGeasllqGdleaAlqalqeaekl....arqadslhvallallqqaeilvaqGrLheAletyeqalqlateqg.lqqlplvgfllvll 128
                  ++a+++a+av+G++   ++++++  +a+q + ++       +  + +++ a+l  +e++  +G ++ A+e  e+a++l +     +++  ++     +
  KKY16409.1 374 THYAKGVALAVIGRIKEATEQRKSFINAMQRVGSTrtlfNNTCRDILAVAEAML-DGELEYRKGNFQSAFEQLERAIHLDDSLPyDEPWGWMQPTRHAY 471
                 589*********************9*****877642111244444555566666.9**********************866543134445444444567 PP

    TPR_MalT 129 adllyEwndLeeAeqhlq 146
                 + ll+E++  eeA +  +
  KKY16409.1 472 GALLLEQGCTEEALRVYE 489
                 999999999999987765 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0057       7.3       8      33 ..      35      58 ..      30      60 .. 0.82
   2 ?   -0.9   0.0       1.7   2.2e+03      12      19 ..     254     261 ..     248     262 .. 0.82
   3 ?    1.1   0.0      0.41   5.2e+02      11      33 ..     434     454 ..     433     457 .. 0.84
   4 ?    3.6   0.1     0.065        83       8      28 ..     474     494 ..     469     501 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0057
       TPR_7  8 lysrlGdyeeAielyeqsLaltkdpe 33
                ++    ++eeA++++e+  a+  dp+
  KKY16409.1 35 IWTYGFNHEEAASCFEK--AVNHDPT 58
                66666799*********..9998886 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.7
       TPR_7  12 lGdyeeAi 19 
                 +Gdy++Ai
  KKY16409.1 254 CGDYRRAI 261
                 7******8 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.41
       TPR_7  11 rlGdyeeAielyeqsLaltkdpe 33 
                 r G+++ A e +e+  a++ d++
  KKY16409.1 434 RKGNFQSAFEQLER--AIHLDDS 454
                 569***********..8888775 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.065
       TPR_7   8 lysrlGdyeeAielyeqsLal 28 
                 l  ++G +eeA+++ye+ L++
  KKY16409.1 474 LLLEQGCTEEALRVYEADLGF 494
                 66788889*********7765 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.25   3.2e+02      60      73 ..      41      54 ..      36      68 .. 0.77
   2 ?   -3.4   0.0       9.9   1.3e+04      26      47 ..     140     160 ..     135     163 .. 0.53
   3 ?    4.2   0.1      0.04        51      52      72 ..     429     449 ..     429     454 .. 0.67
   4 !    8.1   0.4    0.0025       3.2       7      64 ..     469     527 ..     463     529 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.25
      TPR_12 60 ryeeAlelleeala 73
                ++eeA + +e+a++
  KKY16409.1 41 NHEEAASCFEKAVN 54
                56677777776665 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.9
      TPR_12  26 lekaleia.rrllGpdhpltatt 47 
                 + +a+e + rr   p  +++at 
  KKY16409.1 140 YAEAMEGVyRRF--PGDLDVATL 160
                 555666554554..334445554 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.04
      TPR_12  52 grlyralgryeeAlelleeal 72 
                 g+l ++ g+++ A e le+a+
  KKY16409.1 429 GELEYRKGNFQSAFEQLERAI 449
                 455667777777777777775 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.0025
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrl.lGpdhpltattlrnLgrlyralgryeeA 64 
                 + ++a+l+++g  +eAl+ +e+ l     l   + hp+ +++l+++ +++ +l+r+ eA
  KKY16409.1 469 HAYGALLLEQGCTEEALRVYEADLGFNDTLpRAHRHPNNVWALHGYHECLVKLNRTSEA 527
                 57899****************99999999989999999999999999999999999988 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.14   1.8e+02      28      61 ..      25      58 ..      17      64 .. 0.87
   2 !    7.0   0.1    0.0052       6.6      36      60 ..     429     453 ..     421     459 .. 0.87
   3 ?    2.3   0.1      0.14   1.8e+02      35      54 ..     471     490 ..     467     503 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.14
       TPR_9 28 dpeerrdRGlllaqlGclsaAladLeaylalapd 61
                + + ++ RGl+     + ++A+ ++e ++ ++p 
  KKY16409.1 25 ETQKWFTRGLIWTYGFNHEEAASCFEKAVNHDPT 58
                567899999999999999*************995 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0052
       TPR_9  36 GlllaqlGclsaAladLeaylalap 60 
                 G l+++ G+++ A + Le++++l++
  KKY16409.1 429 GELEYRKGNFQSAFEQLERAIHLDD 453
                 889******************9886 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.14
       TPR_9  35 RGlllaqlGclsaAladLea 54 
                  G ll ++Gc+++Al+  ea
  KKY16409.1 471 YGALLLEQGCTEEALRVYEA 490
                 68999999999999987665 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0011       1.4      13      44 ..      42      70 ..      41      70 .. 0.94
   2 ?    1.9   0.2      0.27   3.5e+02      16      47 ..     140     168 ..     137     192 .. 0.66
   3 ?    0.9   0.0      0.58   7.4e+02      37      53 ..     375     391 ..     374     394 .. 0.93
   4 ?    4.6   0.0      0.04        51      41      62 ..     429     453 ..     425     459 .. 0.63
   5 ?   -0.0   0.1       1.1   1.4e+03       6      22 ..     474     490 ..     470     493 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0011
      TPR_16 13 yddAaaaleaalkrdpssPdaaeAllllgdaa 44
                 ++Aa  +e a+  d   P +a A+++l+ ++
  KKY16409.1 42 HEEAASCFEKAVNHD---PTCAMAYWGLAYCL 70
                699************...***********996 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.27
      TPR_16  16 AaaaleaalkrdpssPdaaeAllllgdaalrq 47 
                  a+a e + +r+   P + + + l++da+  +
  KKY16409.1 140 YAEAMEGVYRRF---PGDLDVATLYADALMNL 168
                 456669999999...77777888888877665 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.58
      TPR_16  37 llllgdaalrqgrlaeA 53 
                 ++++g+a+++ gr +eA
  KKY16409.1 375 HYAKGVALAVIGRIKEA 391
                 799************99 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.04
      TPR_16  41 gdaalrqgrlaeAaalyraal...r 62 
                 g++ +r+g+++ A +++++a+   +
  KKY16409.1 429 GELEYRKGNFQSAFEQLERAIhldD 453
                 6667777777777777777663333 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 1.1
      TPR_16   6 aalragdyddAaaalea 22 
                 ++l++g  ++A++++ea
  KKY16409.1 474 LLLEQGCTEEALRVYEA 490
                 67777778888888875 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       6.2     8e+03       3      11 ..       8      16 ..       7      17 .. 0.71
   2 ?    7.1   0.0    0.0057       7.3      16      33 ..      41      58 ..      29      59 .. 0.87
   3 ?    3.3   0.0     0.094   1.2e+02      12      31 ..     433     452 ..     429     454 .. 0.84
   4 ?   -2.9   0.0       8.9   1.1e+04       7      25 ..     471     489 ..     468     490 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 6.2
                HHHHHHHHH CS
       TPR_8  3 ayynlgsiy 11
                +yy lgs +
  KKY16409.1  8 VYYDLGSFH 16
                788888765 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0057
                -HHHHHHHHHHHHHHHHH CS
       TPR_8 16 dyeeAkeyyekaleldpd 33
                ++eeA +++eka+  dp+
  KKY16409.1 41 NHEEAASCFEKAVNHDPT 58
                79**********987776 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.094
                 HHTT-HHHHHHHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyekaleld 31 
                   +g++++A e +e+a+ ld
  KKY16409.1 433 YRKGNFQSAFEQLERAIHLD 452
                 579*************9776 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 8.9
                 HHHHHHHTT-HHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyye 25 
                  g ++l++g  eeA  +ye
  KKY16409.1 471 YGALLLEQGCTEEALRVYE 489
                 5667788888899988887 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.034        44      16      43 ..      41      68 ..      29      69 .. 0.87
   2 ?    0.1   0.1       1.6     2e+03      20      43 ..     143     163 ..     135     164 .. 0.66
   3 ?   -0.9   0.0       3.2   4.2e+03      13      26 ..     177     190 ..     173     215 .. 0.67
   4 ?    1.1   0.0      0.76   9.7e+02       4      22 ..     339     357 ..     336     358 .. 0.86
   5 ?    7.3   0.1    0.0076       9.7       8      31 ..     429     452 ..     421     465 .. 0.80
   6 ?    2.0   0.0      0.37   4.8e+02       4      26 ..     468     490 ..     466     514 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.034
      TPR_14 16 dpdeAiallrralalaPddaeawlllaq 43
                +++eA+ ++++a+ ++P+ a a+  la 
  KKY16409.1 41 NHEEAASCFEKAVNHDPTCAMAYWGLAY 68
                79******************99988775 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.6
      TPR_14  20 AiallrralalaPddaeawlllaq 43 
                 A++    + +++P+d+++ +l+a+
  KKY16409.1 143 AME---GVYRRFPGDLDVATLYAD 163
                 333...334457999999999996 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 3.2
      TPR_14  13 alGdpdeAiallrr 26 
                 + G+p+e ++ l++
  KKY16409.1 177 RTGRPAEGAQTLEA 190
                 67888887777766 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.76
      TPR_14   4 llalaeallalGdpdeAia 22 
                 l+++++al + G+++e ++
  KKY16409.1 339 LAMRVHALIRFGRWEEILD 357
                 6899***********9876 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.0076
      TPR_14   8 aeallalGdpdeAiallrralala 31 
                 +e++++ G+++ A + l+ra+ l+
  KKY16409.1 429 GELEYRKGNFQSAFEQLERAIHLD 452
                 78899***************8655 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.37
      TPR_14   4 llalaeallalGdpdeAiallrr 26 
                 + a++++ll++G ++eA++++++
  KKY16409.1 468 RHAYGALLLEQGCTEEALRVYEA 490
                 568999**************996 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0       1.1   1.5e+03      11      24 ..       4      17 ..       2      27 .. 0.83
   2 ?    4.4   0.1     0.045        58       1      24 [.      48      71 ..      48      91 .. 0.82
   3 ?   -1.2   0.0       2.7   3.5e+03       8      25 ..     150     167 ..     147     169 .. 0.83
   4 ?   -1.8   0.0       4.3   5.5e+03      16      32 ..     375     391 ..     373     393 .. 0.87
   5 ?    1.5   0.0      0.39     5e+02      16      33 ..     468     485 ..     466     486 .. 0.88
   6 ?    2.1   0.0      0.25   3.2e+02       8      24 ..     503     519 ..     501     527 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 1.1
      TPR_17 11 nnadaynnLAelll 24
                ++ d+y+ L+ +++
  KKY16409.1  4 DDDDVYYDLGSFHR 17
                6789******9876 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.045
      TPR_17  1 lylkaleldPnnadaynnLAelll 24
                +++ka+ +dP+ a ay  LA++l 
  KKY16409.1 48 CFEKAVNHDPTCAMAYWGLAYCLG 71
                89*********9999999999986 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.7
      TPR_17   8 ldPnnadaynnLAelllk 25 
                 + P + d+ +++A +l +
  KKY16409.1 150 RFPGDLDVATLYADALMN 167
                 579999999999999876 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 4.3
      TPR_17  16 ynnLAelllknGdlmtA 32 
                 ++ ++++l+ +G+ ++A
  KKY16409.1 375 HYAKGVALAVIGRIKEA 391
                 7999*****99999888 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.39
      TPR_17  16 ynnLAelllknGdlmtAr 33 
                  + ++ lll++G +++A+
  KKY16409.1 468 RHAYGALLLEQGCTEEAL 485
                 6899***********996 PP

  == domain 6  score: 2.1 bits;  conditional E-value: 0.25
      TPR_17   8 ldPnnadaynnLAelll 24 
                 ++Pnn++a++ + e+l 
  KKY16409.1 503 RHPNNVWALHGYHECLV 519
                 69*******97755555 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.033        43       4      39 ..      41      74 ..      39     101 .. 0.76
   2 ?   -1.4   0.0       2.2   2.8e+03      36      69 ..     137     168 ..     133     172 .. 0.66
   3 ?    3.3   0.1     0.077        98      28      53 ..     427     453 ..     421     490 .. 0.72
   4 ?    0.5   0.1      0.55     7e+02      57      75 ..     507     527 ..     467     529 .. 0.57

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.033
                -HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-H CS
      ANAPC3  4 nyknAiflaerllaaetespedayllAlclylngqy 39
                n+++A  ++e+++  +   +  ay+ +l+++l  +y
  KKY16409.1 41 NHEEAASCFEKAV-NHDPTCAMAYW-GLAYCLGPNY 74
                899**********.55556666777.6666555555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.2
                 TT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHT CS
      ANAPC3  36 ngqykrAyellrkaklnskslgcrylfAqcllkL 69 
                 n++y +A+e + +    + +l ++ l+A +l  L
  KKY16409.1 137 NKRYAEAMEGVYRR--FPGDLDVATLYADALMNL 168
                 56677777655555..577777788888777766 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.077
                 HHHHHHHHTT-HHHHHHHHHCT.SHHH CS
      ANAPC3  28 llAlclylngqykrAyellrka.klns 53 
                 l ++  y+ g++++A+e l++a  l++
  KKY16409.1 427 LDGELEYRKGNFQSAFEQLERAiHLDD 453
                 556677999***********9955544 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.55
                 HHHHHHH..HHHHHTT-HHHH CS
      ANAPC3  57 gcrylfA..qcllkLkkyeeA 75 
                 +++ l++  +cl+kL++  eA
  KKY16409.1 507 NVWALHGyhECLVKLNRTSEA 527
                 344444444788888887777 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.4      0.18   2.3e+02      12      26 .]     176     190 ..     175     190 .. 0.90
   2 ?    0.4   0.0       1.2   1.5e+03       4      19 ..     339     354 ..     337     354 .. 0.88
   3 ?   -1.2   0.0       3.8   4.9e+03       3      20 ..     374     391 ..     373     394 .. 0.85
   4 ?    7.6   0.4    0.0055       7.1       3      25 ..     467     489 ..     465     490 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.18
       TPR_4  12 lalGdldeAraller 26 
                 l++G+++e +++le+
  KKY16409.1 176 LRTGRPAEGAQTLEA 190
                 689*********995 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.2
       TPR_4   4 llaLArallalGdlde 19 
                 l+++  al + G+++e
  KKY16409.1 339 LAMRVHALIRFGRWEE 354
                 688999*******997 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 3.8
       TPR_4   3 allaLArallalGdldeA 20 
                 +++a + al+  G+  eA
  KKY16409.1 374 THYAKGVALAVIGRIKEA 391
                 689999999999999998 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0055
       TPR_4   3 allaLArallalGdldeAralle 25 
                 +++a++ +ll++G  +eA+++ e
  KKY16409.1 467 TRHAYGALLLEQGCTEEALRVYE 489
                 7999****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.52
# Mc/sec: 3336.56
//
Query:       KKY16410.1  [L=293]
Description: putative esterase lipase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-31  108.4   0.0    6.9e-31  107.8   0.0    1.3  1  Abhydrolase_3  alpha/beta hydrolase fold
    6.7e-06   25.7   0.0    3.8e-05   23.3   0.0    1.9  1  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
       0.13   11.8   0.0        0.2   11.2   0.0    1.3  1  DUF2974        Protein of unknown function (DUF2974)
        0.2   11.2   0.1        1.3    8.6   0.0    2.1  3  Esterase       Putative esterase


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.8   0.0   1.5e-34   6.9e-31       2     209 ..      64     266 ..      63     268 .. 0.89

  Alignments for each domain:
  == domain 1  score: 107.8 bits;  conditional E-value: 1.5e-34
                    EEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT- CS
  Abhydrolase_3   2 vyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardege 97 
                    +  HG Gfv+    ++d +cr +++++  +v+ ++Yrl+Pe pf a+++d+ ++l++++++   + +d +r+++ G SaG+nl++a++ ++  +  
     KKY16410.1  64 LNSHGSGFVMPLHGSDDVYCRYVSRNSPFTVLDIKYRLSPEEPFAAPLHDVEDVLKYVQAR--PKDYDLKRLCISGFSAGANLSLAASSMMLPK-- 155
                    678*********************************************************9..589**********************888887.. PP

                    --EEEEEEESE-SST.SSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSSGGGGGSTTTSGGGCS-SST--.-EEEEEETT-TTHHHHHHHHHHHH CS
  Abhydrolase_3  98 pkvagqvliyPvtdl.ertesesikkaeeladgplltraaldlfwrlylpeadrddplaspllaedlsglp.ptlvvvaefDplrdegeayaerlr 191
                     + + +v iyP  dl     ++  k a   ++g+ +++ + ++f   y +++d +dp++sp +a   +++p  +lv++  +D l +ege++aer++
     KKY16410.1 156 DTFRSIVAIYPPADLaG---NPGLK-APPDTSGQRIPPFMSRIFDGSYFQDHDPHDPRISPYYA-PAENFPqNVLVITPAQDYLCNEGEELAERIK 246
                    489********887832...33332.2222556667889999**********************.888888359********************** PP

                    H..TT--EEEEEETTEETTG CS
  Abhydrolase_3 192 a..agvevelieyegmvHgf 209
                    +   g+ v+  ++eg  H+f
     KKY16410.1 247 KdgGGKYVRSFRIEGCGHAF 266
                    9667899***********99 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   8.5e-09   3.8e-05      45     190 ..     111     268 ..     107     284 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 8.5e-09
                   HHHHHHHHHHHHHTT.S--GGGEEEEEETHHHHHHHHHHH..H-GGG-SEEEEESE---CCCHHCSTTS..........THH.HCCCC--TTTCHHH CS
  Peptidase_S9  45 fdDfiaaaealakeg.yvdserlaitGgSyGGyltgaaln..qrpdlFkaavaevpvvdvlrydsdtdl..........lte.eymewgnpeeneeg 127
                   ++D+ ++++++ ++    d +rl+i G S+G  l++aa      +d+F+ +va +p +d+      +            +    +++   ++ ++++
    KKY16410.1 111 LHDVEDVLKYVQARPkDYDLKRLCISGFSAGANLSLAASSmmLPKDTFRSIVAIYPPADLAGNPGLKAPpdtsgqrippFMSrIFDGSYFQDHDPHD 207
                   689999********99*******************99987524579*************99864432212222334477666344444444446666 PP

                   HHHHHHH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-S..EEEEEETTS-SSTTS CS
  Peptidase_S9 128 ykelspyspldnvkaypplLlihGlaDdrvppaealklvaaLqkkgkn..vlllifpdegHgvgk 190
                    +    y+p++n    +++L+i+  +D+ +  +e+++l+++ +k g    v+     + gH + k
    KKY16410.1 208 PRISPYYAPAEN--FPQNVLVITPAQDYLC--NEGEELAERIKKDGGGkyVRSFRIEGCGHAFDK 268
                   644445677788..8999999999999999..999999999996654434777777777885544 PP

>> DUF2974  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.4e-05       0.2      68     117 ..     114     165 ..     105     194 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.4e-05
     DUF2974  68 qesAlkYlnkileesegk.iylgGhSkGGnlAvyaamn.aeddlqeriskiy 117
                  e+ lkY++   + ++ k ++++G+S G+nl + a+ + +++d  + i +iy
  KKY16410.1 114 VEDVLKYVQARPKDYDLKrLCISGFSAGANLSLAASSMmLPKDTFRSIVAIY 165
                 5667899999988888766*************99987657888777888877 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00029       1.3       2      46 ..      40      82 ..      39      96 .. 0.77
   2 ?   -0.3   0.0      0.15   6.9e+02     102     150 ..     117     168 ..     114     212 .. 0.75
   3 ?   -3.1   0.0       1.1   4.7e+03     212     233 ..     238     262 ..     221     267 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00029
                TTTTEEEEEEEEE.CC.GGTTTEEEEEEE--TTHHC.CHHHHHCHH CS
    Esterase  2 ealgreikvqvyLPedyspgrkypvvylldGltgwd.qnfrakell 46
                   +r ikv +yLPe+  ++ + pv++  +G +g+    +  ++++
  KKY16410.1 40 RDPKRAIKVHLYLPEN--SNSPSPVLLNSHG-SGFVmPLHGSDDVY 82
                567899**********..9************.66541455555555 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.15
                 HHHHHHHHCSEECCC.EEEEEETHHHHHHHHHHHC..STTTCCEEEEES--S CS
    Esterase 102 Llplldanfrtapdg.ravaGqSmGGlgALilalk..hpdrFgsvssfSpiv 150
                 +l +++a+ + ++ +   + G+S G+  +L + +     d F s+ +  p++
  KKY16410.1 117 VLKYVQARPKDYDLKrLCISGFSAGANLSLAASSMmlPKDTFRSIVAIYPPA 168
                 56667777666666667899*****999999876644456676666665555 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.1
                 HCCHHHHCCCCCCTT-SCCCC...- CS
    Esterase 212 nrelkeqlaargvegedheyd...G 233
                  +el+e++++ g +++++++     
  KKY16410.1 238 GEELAERIKKDGGGKYVRSFRiegC 262
                 5688999999999999999876644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.54
# Mc/sec: 1623.08
//
Query:       KKY16411.1  [L=554]
Description: putative glutamine amidotransferase:cyclase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-44  151.6   0.1    1.1e-43  149.4   0.1    2.0  1  His_biosynth   Histidine biosynthesis protein
    3.1e-25   89.0   0.0    4.8e-25   88.4   0.0    1.2  1  GATase         Glutamine amidotransferase class-I
    1.5e-12   47.7   0.0    3.7e-09   36.7   0.0    2.3  2  SNO            SNO glutamine amidotransferase family
    1.2e-07   31.6   0.0    2.3e-07   30.6   0.0    1.4  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
  ------ inclusion threshold ------
      0.019   14.8   0.0      0.045   13.6   0.0    1.6  1  DJ-1_PfpI      DJ-1/PfpI family
       0.13   12.0   0.0        1.5    8.6   0.0    2.2  2  Peptidase_C26  Peptidase C26


Domain annotation for each model (and alignments):
>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.4   0.1   3.5e-47   1.1e-43       1     220 [.     234     522 ..     234     529 .. 0.86

  Alignments for each domain:
  == domain 1  score: 149.4 bits;  conditional E-value: 3.5e-47
                   EEEEEEEE...ETTEEEEECTTCS...........TCEEEETTSHHHHHHHHHHHT-SEEEEEEHHHHCTTHHHHH...HHHHHHHHH-SSEEEEES CS
  His_biosynth   1 riipalDl...kdGkvVrlvkGdr...........fqelryagdpvelakryeeegadelhvvDldaakegreanl...dlveeiaeevfipvqvGG 80 
                   rii +lD+   ++G  V ++kGd+             + r  g+pve+akry+e+gade++++ ++  +++  a+l   ++++++ e+vf+p+++GG
    KKY16411.1 234 RIIACLDVrsnDQGDLV-VTKGDQydvrekssvstGGAVRNLGKPVEMAKRYYEQGADEVTFLNITSFRNCPLADLpmlEILRQTSETVFVPLTIGG 329
                   7*******777788888.89****9***99999888889999************************99988766552227888************** PP

                   S............SSSHHHHHHHHHCT-SEEEESHHHHH-THH.............HHHHHHHHCGGGEEEEEEEEE............C....... CS
  His_biosynth  81 G............Irsledveelleagadkviigtaavknpel.............ikelaekfgsqkivvaiDarr............g....... 133
                   G            ++ l+ ++ ++++gadkv+ig+ av+  e              i++++ ++g+q++vv++D +r                    
    KKY16411.1 330 GirdtidpatnkqVSALDVATMYFKSGADKVSIGSDAVDAAEQyfssgkkltgktaIEQISGAYGNQAVVVSVDPKRiyvasppstthhTiktatpg 426
                   *888888888888888999999**************766544323333333444449********************99888777666505566666 PP

                   ........EEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS---HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTC.SEEEES CS
  His_biosynth 134 ........ykvaikgwreetgldavelakkleelgageilltdidrdGtlsGpdleltkelaeavkipviasGGvgsledlkelksegv.davivg 220
                           y++++kg+re  ++d+v+l+ ++e lg geill+ id+dG+ sG+dlel++ +++ vkipvias G+g++++++e+++++  da++ +
    KKY16411.1 427 pngeehiwYQCTVKGGREGRDFDVVQLVTAVEALGTGEILLNCIDKDGSNSGYDLELINLVKSVVKIPVIASSGAGNPSHFQEVFEKTTvDAALGA 522
                   78899********************************************************************************66664877754 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.0   1.6e-28   4.8e-25       2     177 ..       6     201 ..       5     211 .. 0.87

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 1.6e-28
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.......TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEE CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg.......vegkieaikearenkiPiLGICLGmQllaiefgrkvv 93 
                 l+D+ ++++++lv+a+ +lg++ve v+     + +     ++d+ l+ +G+g+ g       ++g +e ++e ++n++P++GIC G+Q+l++ + +++ 
  KKY16411.1   6 LLDYVAGNIRSLVNAIEKLGYEVEWVKSPD--DVK-----QADK-LILPGVGHFGhclsqlaAGGFLEPVREHISNGKPFMGICVGLQALFEGSEENLS 96 
                 78999***************8888887664..433.....3455.56689**********************************************888 PP

                 ................EEECEEEEEEEEEEEETTT....CGGTTTTSEEEEEEEEEEEEESG..CHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSB CS
      GATase  94 ................kekekehhggtmrlgddet....allyglknevierhrHryevnpk..elepaglevtakseddeelmeiiekknpfvgvQFH 170
                                   k+ +h g+++  + ++     +++ygl +e + +  H+y++  +  +le++g++v+  +  de+++++i k+n + ++QFH
  KKY16411.1  97 vpglgiipgklsrfrdDSKSVPHIGWNSANTVHKGeqdqKEFYGLRPESKYYYVHSYAAPYEpgALEKNGWTVATGTYGDETFIGAIGKDN-ILATQFH 194
                 888889999999999977779*****9986654445788*******************998899*********99999999*********9.******* PP

                 TTSTTST CS
      GATase 171 PEststp 177
                 PE++ + 
  KKY16411.1 195 PEKSGQA 201
                 **97654 PP

>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   1.2e-12   3.7e-09       5      96 ..      11     103 ..       8     111 .. 0.86
   2 !    8.6   0.0    0.0005       1.5     152     183 ..     175     210 ..     134     213 .. 0.76

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.2e-12
                 SSSHHHHHHHHHHTTSEEEEE-SGGGGCC-SEEEE-S.S-.HHHHHHHHHHTT-HHHHHHHHHTT.--EEEETHHHHHHCCEETTB.SS-SS--C CS
         SNO   5 qGaveehveaikkclaenktvkrkedlaevdaliiPG.Ge.stamskliertglyedllefvknsekvvlGtCaGlillskelene.lvktlell 96 
                  G+++  v+ai+k ++e   vk+++d+++ d li+PG G    ++s+l+   g++e+++e + n+ k+ +G C Gl  l ++ e++  v+ l+++
  KKY16411.1  11 AGNIRSLVNAIEKLGYEVEWVKSPDDVKQADKLILPGvGHfGHCLSQLA-AGGFLEPVREHISNG-KPFMGICVGLQALFEGSEENlSVPGLGII 103
                 6899999*****************************9544235667766.679************.***********999998888778888776 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0005
                 T..EEEEEE.ETTEEEESS-GGGS.TTHCHHHHHHH CS
         SNO 152 g..eivvak.qkkilatsfhPela.eddirvhdyfv 183
                 g    ++a  +++ilat fhPe + + + rv + f+
  KKY16411.1 175 GdeTFIGAIgKDNILATQFHPEKSgQAGLRVIKAFL 210
                 433678888567**********98245788888886 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   7.8e-11   2.3e-07      25     115 ..      26     107 ..       8     140 .. 0.86

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 7.8e-11
    GATase_3  25 vrvrfvplkdeslgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGeeiedpegvegeageveglglLdiet 115
                  +v++v+ + +++++ ad +ilpG     + l  l++ g+ e ++e++++g+p +giC Glq L e  e+         +v+glg+++ + 
  KKY16411.1  26 YEVEWVK-SPDDVKQ-ADKLILPGVGHFGHCLSQLAAGGFLEPVREHISNGKPFMGICVGLQALFEGSEENL-------SVPGLGIIPGKL 107
                 4678888.8888855.************************************************99977654.......899999999765 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.5e-05     0.045      43     108 ..      23      88 ..      14      92 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.5e-05
                 TTSEEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSH..HHHHHHHHHHHTT-EEEEETTTHHHHH CS
   DJ-1_PfpI  43 srGlkvtvdaslddvkaaeyDalvlpGGragperlrene..kvvelvkefaekgklvaaICagpqlLa 108
                 + G++v   +s ddvk+a  D l+lpG     ++l++ +   ++e v+e+ ++gk++  IC g q L 
  KKY16411.1  23 KLGYEVEWVKSPDDVKQA--DKLILPGVGHFGHCLSQLAagGFLEPVREHISNGKPFMGICVGLQALF 88 
                 557777777788887666..*******6666888887664479999*****************99986 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00049       1.5      98     118 ..      67      87 ..      64      93 .. 0.90
   2 ?    0.6   0.0      0.13     4e+02     206     216 .]     186     196 ..     166     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00049
  Peptidase_C26  98 iraalergvPilgiCrGlqll 118
                    +r+ +++g+P +giC Glq l
     KKY16411.1  67 VREHISNGKPFMGICVGLQAL 87 
                    68899**************87 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.13
  Peptidase_C26 206 afvlgvQwHPE 216
                      +l+ Q+HPE
     KKY16411.1 186 DNILATQFHPE 196
                    4799******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 3680.25
//
Query:       KKY16412.1  [L=1718]
Description: putative aaa family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-49  165.5   0.0    2.1e-41  141.4   0.0    2.5  2  AAA              ATPase family associated with various cellul
      2e-10   40.3   0.0    7.4e-10   38.5   0.0    2.0  1  AAA_lid_3        AAA+ lid domain
    1.7e-07   31.2   0.0    2.8e-06   27.2   0.0    2.3  2  IstB_IS21        IstB-like ATP binding protein
    4.7e-07   30.4   0.8      4e-05   24.1   0.0    3.3  3  AAA_16           AAA ATPase domain
    1.2e-05   25.5   0.0    3.3e-05   24.1   0.0    1.8  1  AAA_2            AAA domain (Cdc48 subfamily)
    0.00021   21.3   0.0    0.00092   19.2   0.0    2.2  1  AAA_5            AAA domain (dynein-related subfamily)
      0.002   18.4   0.6      0.052   13.8   0.1    3.3  1  AAA_22           AAA domain
     0.0032   17.9   0.0     0.0085   16.5   0.0    1.8  1  RNA_helicase     RNA helicase
     0.0036   17.2   0.0       0.11   12.4   0.0    2.4  2  NACHT            NACHT domain
     0.0038   16.8   0.0      0.011   15.3   0.0    1.8  1  AAA_25           AAA domain
     0.0085   16.1   0.0      0.028   14.5   0.0    1.9  1  AAA_14           AAA domain
  ------ inclusion threshold ------
       0.01   15.9   0.0      0.026   14.6   0.0    1.6  1  Bromodomain      Bromodomain
      0.013   15.7   0.0      0.046   13.9   0.0    2.0  1  AAA_33           AAA domain
      0.013   15.3   0.0      0.034   13.9   0.0    1.7  1  AAA_30           AAA domain
      0.014   14.8   0.1      0.071   12.5   0.0    2.0  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.016   14.5   0.0      0.027   13.7   0.0    1.3  1  TIP49            TIP49 P-loop domain
      0.017   15.6   0.0      0.064   13.8   0.0    2.0  1  ABC_tran         ABC transporter
      0.018   14.8   0.0       0.17   11.6   0.0    2.2  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.019   15.5   0.0      0.075   13.6   0.0    2.1  1  AAA_18           AAA domain
      0.066   12.3   0.0       0.39    9.8   0.0    2.1  2  Parvo_NS1        Parvovirus non-structural protein NS1
      0.068   13.0   0.0       0.26   11.2   0.0    1.9  2  AAA_3            ATPase family associated with various cellul
      0.094   12.4   0.0        1.6    8.4   0.0    2.6  3  Sigma54_activat  Sigma-54 interaction domain
        0.1   12.7   0.0       0.99    9.5   0.0    2.2  2  Sigma54_activ_2  Sigma-54 interaction domain
        0.1   11.8   0.0       0.33   10.1   0.0    1.8  2  DUF2075          Uncharacterized conserved protein (DUF2075)
       0.15   12.2   0.0        1.2    9.2   0.0    2.2  2  Torsin           Torsin
       0.17   11.3   0.0       0.37   10.2   0.0    1.5  1  PhoH             PhoH-like protein
       0.18   11.3   0.0       0.34   10.4   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
       0.35   10.6   0.0       0.35   10.6   0.0    4.4  4  AAA_11           AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.4   0.0   3.3e-44   2.1e-41       1     132 []     653     788 ..     653     788 .. 0.95
   2 !   21.6   0.0   3.5e-07   0.00023       1      88 [.     956    1036 ..     956    1071 .. 0.82

  Alignments for each domain:
  == domain 1  score: 141.4 bits;  conditional E-value: 3.3e-44
                 EEEESSTTSSHHHHHHHHHHHH.....THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel.....gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteld 94 
                 vl++GppGtGKTlla+a+a+++     +v+f+  +g++ lsk+vge+e+++r lf+ea++ + psi+f+DEid la+ rs+++++ + ++v++Ll+ +d
  KKY16412.1 653 VLFHGPPGTGKTLLARALASSVssqgqKVTFYMRKGADALSKWVGEAERQLRLLFEEARKTQ-PSIIFFDEIDGLAPVRSSKQEQIHASIVATLLALMD 750
                 79*******************855544699*******************************9.************************************ PP

                 HTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETTS CS
         AAA  95 gvkkkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 g++ + ++vivigatnrpd++dpal+r gRfdr+++++l
  KKY16412.1 751 GMDGR-GQVIVIGATNRPDSVDPALRRpGRFDREFYFPL 788
                 ****7.56****************************985 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 3.5e-07
                  EEEESSTTSSHHHHHHHHHHHH.THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA    1 vllyGppGtGKTllakavakel.gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnq 88  
                  +l+ G pG+G  +la a+ +++ g ++ ++++++lls+    +e+ + +lf+e+k+++ ps++ i ++     +        +++v+++
  KKY16412.1  956 LLVRGVPGMGQQYLAAAILNHFeGLHVQSFDLPTLLSDSTRSQEAAVVQLFTEVKTHK-PSVIYIPNVLTWYATV-------GQTVIAT 1036
                  5889*****************956*********************************8.******8876655444.......5555555 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   1.2e-12   7.4e-10       5      38 ..     815     848 ..     812     869 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 1.2e-12
   AAA_lid_3   5 keLAerTeGySGADlaalcreAallAlrrgikei 38 
                 +eLAe+T+Gy GADl alc eAal+A++r  ++i
  KKY16412.1 815 DELAELTKGYGGADLRALCTEAALNAVQRRYPQI 848
                 79*************************9976654 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   4.3e-09   2.8e-06      49     130 ..     652     737 ..     640     746 .. 0.87
   2 ?    1.1   0.0      0.46   2.9e+02      50      67 ..     956     973 ..     920    1002 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 4.3e-09
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvlfvr...vedLveelkrarrdgklaralkrllkvdllilDdl.gllpldqaeaell 130
                 ++++ Gp+G+GK+ la al+ +   +g +v+f+    +++L + +  a+r+ +l  + +r ++++++  D++ gl p+ + ++e++
  KKY16412.1 652 GVLFHGPPGTGKTLLARALASSVSSQGQKVTFYMrkgADALSKWVGEAERQLRLLFEEARKTQPSIIFFDEIdGLAPVRSSKQEQI 737
                 68999*************************99853446789999***************************978888877776665 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.46
   IstB_IS21  50 ivllGpsGvGKshlaial 67 
                 +++ G +G+G  +la+a+
  KKY16412.1 956 LLVRGVPGMGQQYLAAAI 973
                 7889************98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1         8   5.1e+03      89     135 ..     400     447 ..     377     453 .. 0.68
   2 !   24.1   0.0   6.3e-08     4e-05      24     132 ..     650     754 ..     640     769 .. 0.68
   3 ?    2.6   0.0      0.24   1.5e+02      10      51 ..     940     980 ..     934    1017 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 8
      AAA_16  89 aesaeleawrekleealaavpelagaeasrllellkrll.allsrder 135
                 ++s+ ++ +r   +++++++pe +g+ +  l+e+l++l  ++ sr++r
  KKY16412.1 400 DSSNGRRSARLSRKRSARQSPETDGDREAELAEELAELKpDRRSRRKR 447
                 444445555555556666888888888899999999988855555444 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 6.3e-08
      AAA_16  24 pelvllsGesGvGKsslvrellralekd..ggif.lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaea.sr 118
                 p+ vl++G++G+GK+ l+r+l+ +++ +  ++ f +r  +d l      s ++  + + + lr l +ea++++++       + la+v++ + ++   +
  KKY16412.1 650 PRGVLFHGPPGTGKTLLARALASSVSSQgqKVTFyMRKGADAL------SKWVGEA-E-RQLRLLFEEARKTQPSIIFFDEIDGLAPVRSSKQEQIhAS 740
                 689********************99999544666677777777......7788888.4.4556666665555555555544444554554444444566 PP

      AAA_16 119 llellkrllallsr 132
                 + ++l +l++ +  
  KKY16412.1 741 IVATLLALMDGMDG 754
                 66666666655554 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.24
      AAA_16  10 eqLlsalervrsgrpelvllsGesGvGKsslvrellralekd 51 
                 e++++ +e+ r  r + +l++G +G+G   l+ ++l+++e+ 
  KKY16412.1 940 EKMQQNFEMSRVFR-PRLLVRGVPGMGQQYLAAAILNHFEGL 980
                 55667777555455.4689*********99999999988854 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   5.2e-08   3.3e-05       6     105 ..     653     751 ..     649     757 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 5.2e-08
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS...EEEEETGGG-------------HHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG...ivllDEidKihpkessgadvSregVqrdLLq 101
                 +l+ gp g+Gkt+la+ala+  +  ++ + +++ +++ +   ++++ v + + +     + + +    i+++DEid  +p +ss+++  +  ++  LL 
  KKY16412.1 653 VLFHGPPGTGKTLLARALASSVS--SQGQKVTFYMRKGAD--ALSKWVGEAERQLRLLFEEARKTqpsIIFFDEIDGLAPVRSSKQEQIHASIVATLLA 747
                 689******************98..455666677888777..77788888877777776666666777*************9999999999999***** PP

                 HHH- CS
       AAA_2 102 ileg 105
                 +++g
  KKY16412.1 748 LMDG 751
                 **98 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.4e-06   0.00092       2     135 ..     653     775 ..     652     777 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.4e-06
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..- CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrlllee 98 
                 vl  GppGtgK+ la+ la+ + ++ + v ++ +  ++ l  ++    g+++++   l ++ar  +++i+++DE++ + +   ++  ++       l  
  KKY16412.1 653 VLFHGPPGTGKTLLARALASSVSSQGQKVTFYMRKGADAL-SKWV---GEAERQLRLLFEEARktQPSIIFFDEIDGLAPVRSSKQEQIHASIVATLLA 747
                 8999******************555555555554445554.5666...68999999999999999999*******987765555554444444444444 PP

                 SSSEEE---......-EEEEEESS--.-TT-TTHHHH CS
       AAA_5  99 ggelvkaknddllerfrviatanpldrslnelspalr 135
                 +   ++ + +     + vi+++n++d    +++palr
  KKY16412.1 748 LMDGMDGRGQ-----VIVIGATNRPD----SVDPALR 775
                 4444444332.....77777777777....6677776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   8.2e-05     0.052       9      32 ..     654     677 ..     650     768 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.2e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqldee 32 
                 + +G++GtGKT+l+r l+++   +
  KKY16412.1 654 LFHGPPGTGKTLLARALASSVSSQ 677
                 679***************997543 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.3e-05    0.0085       1      41 [.     653     690 ..     653     724 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.3e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnped 41 
                   ++++Gp+g+GK++la+ La++++++    +k ++y+r+ +d
    KKY16412.1 653 VLFHGPPGTGKTLLARALASSVSSQ---GQKVTFYMRKGAD 690
                   689********************54...5778899865544 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00017      0.11       3      45 ..     653     690 ..     651     754 .. 0.82
   2 ?    2.0   0.0      0.28   1.8e+02       3      51 ..     956    1002 ..     955    1016 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00017
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTT CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrel 45 
                 v+ +G++G GKT L++ la+   ++ +     k+ F+++ +++
  KKY16412.1 653 VLFHGPPGTGKTLLARALASSVSSQGQ-----KVTFYMRKGAD 690
                 789***************999988772.....67777776655 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.28
                  EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-.. CS
       NACHT    3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna 51  
                  ++++G +G+G  +L++ +       + ++  f+l+ +ls +++s++ ++
  KKY16412.1  956 LLVRGVPGMGQQYLAAAILNHFEGLHVQS--FDLPTLLSDSTRSQEAAV 1002
                  689******************99999888..999999999888887655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.8e-05     0.011      36     147 ..     653     760 ..     646     772 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.8e-05
      AAA_25  36 allaGapgtGKttlaldlalava.tGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagveslpLfakdrggtlltadvdal 133
                 +l+ G+pgtGKt la  la +v+ +G++++  ++    +   +++E  + +lr  ++++++++  ++  ++  ++g      + + +++++ ++ v+ l
  KKY16412.1 653 VLFHGPPGTGKTLLARALASSVSsQGQKVTFYMRKGADALSKWVGEAER-QLRLLFEEARKTQ--PSIIFFDEIDGL---APVRSSKQEQIHASIVATL 745
                 5789********************9*99998777777777778888888.7777777777776..455555555443...2222334444444555555 PP

      AAA_25 134 eaaieeveg.vrlvv 147
                  a ++ + g  +++v
  KKY16412.1 746 LALMDGMDGrGQVIV 760
                 555555544455555 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   4.3e-05     0.028       5     118 ..     653     781 ..     650     793 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.3e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikell.vkkesilyinldderdkk.ladpekllelileklkeekktylflDEiqev............pewekalkslvd. 88 
                 ++  G+  +GKT l++ l+++     ++ ++y+    + ++k   + e+ l+l++e++++ + +++f+DEi  +             ++  +l  l+d 
  KKY16412.1 653 VLFHGPPGTGKTLLARALASSVSsQGQKVTFYMRKGADALSKwVGEAERQLRLLFEEARKTQPSIIFFDEIDGLapvrsskqeqihASIVATLLALMDg 751
                 56789999***********98886555666666655555544233445566777777555699********9998888888888888888888888886 PP

      AAA_14  89 .egknldvivtGSnskllskeiatslagrva 118
                  +  +++viv G  +   s + a +  gr +
  KKY16412.1 752 mD-GRGQVIVIGATNRPDSVDPALRRPGRFD 781
                 44.4788888888777666666666666655 PP

>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0     4e-05     0.026      42      71 ..    1243    1272 ..    1235    1279 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4e-05
                   HHHHHHTT--SSHHHHHHHHHHHHHHHHHH CS
  Bromodomain   42 IkkklesnkYksladfeadlkllfsNarky 71  
                   I+k+l ++ Yk+++df ad+k+l + a+  
   KKY16412.1 1243 IEKRLSNGYYKRPKDFLADIKRLAKDAKAI 1272
                   9***********************999865 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   7.2e-05     0.046       2      21 ..     653     672 ..     653     766 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.2e-05
      AAA_33   2 vllvGlpGsGKstlaerllk 21 
                 vl++G+pG+GK+ la+ l+ 
  KKY16412.1 653 VLFHGPPGTGKTLLARALAS 672
                 79**************9975 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   5.3e-05     0.034      21      64 ..     653     694 ..     641     761 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.3e-05
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLae 64 
                 ++ +Gp+GtGKt + +al+  + ++g++v  +  +g  A++L++
  KKY16412.1 653 VLFHGPPGTGKTLLARALASSVSSQGQKVTFYMRKG--ADALSK 694
                 5789************************99876554..444554 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00011     0.071      25      46 ..     653     674 ..     650     694 .. 0.86
   2 ?   -1.2   0.0       1.8   1.1e+03      22      43 ..     953     974 ..     939     984 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsll 46 
                   +l+ GppG+GKt+la++l+s +
    KKY16412.1 653 VLFHGPPGTGKTLLARALASSV 674
                   799**************98765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.8
  Mg_chelatase  22 gHnlllvGppGsGKtmlakrlp 43 
                   +  ll+ G pG G+  la+++ 
    KKY16412.1 953 RPRLLVRGVPGMGQQYLAAAIL 974
                   56799************99875 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.2e-05     0.027      50      97 ..     650     700 ..     606     713 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.2e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  50 GravLlaGpsgtGktalaiaiskelg...edvpfvalsgsevyslevkkte 97 
                  r+vL+ Gp+gtGkt la a++ +++   ++v f + +g++  s  v  +e
  KKY16412.1 650 PRGVLFHGPPGTGKTLLARALASSVSsqgQKVTFYMRKGADALSKWVGEAE 700
                 699******************999864448899999999888877665555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0    0.0001     0.064      13      80 ..     652     732 ..     644     760 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.0001
                 EEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS.--S-TTSBHHHH.........H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx.xxxxxxxxxxxx.........x RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqe.pqlfpeltvren.........e 80 
                  v + G+ G+GK+ L+++la  ++ +  ++++ +++  +   +   +++++++ l++e  + +p +   ++          
  KKY16412.1 652 GVLFHGPPGTGKTLLARALASSVSSQGQKVTFYMRKGADalsKWVGEAERQLRLLFEEaRKTQPSIIFFDEidglapvrsS 732
                 57899*************************988666666566899999999999999977777777666556777776542 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00027      0.17      36      61 ..     653     678 ..     645     737 .. 0.80
   2 ?   -0.1   0.0       1.1   6.8e+02      36      58 ..     956     978 ..     950    1019 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00027
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvkl 61 
                 vl++GpPG Gkt la+ +a+ + ++ 
  KKY16412.1 653 VLFHGPPGTGKTLLARALASSVSSQG 678
                 9******************9887664 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.1
      RuvB_N  36 vllyGpPGlGkttlakiiakelg 58 
                 +l+ G PG+G+  la+ i + ++
  KKY16412.1 956 LLVRGVPGMGQQYLAAAILNHFE 978
                 6899**********988877654 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   0.00012     0.075       1      36 [.     653     689 ..     653     717 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00012
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.gvnlrdvakeng 36 
                 +l  G+pG+GKt la++L+++  + g++++++ +++ 
  KKY16412.1 653 VLFHGPPGTGKTLLARALASSVSSqGQKVTFYMRKGA 689
                 5778**************9997557999999888765 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0006      0.39     117     140 ..     653     676 ..     645     682 .. 0.88
   2 ?   -1.0   0.0       1.2   7.7e+02     117     138 ..     956     977 ..     947     980 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0006
   Parvo_NS1 117 vwfyGpantGktnlaeaIakavpl 140
                 v+f+Gp+ tGkt la+a+a  v +
  KKY16412.1 653 VLFHGPPGTGKTLLARALASSVSS 676
                 89*****************98865 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.2
   Parvo_NS1 117 vwfyGpantGktnlaeaIakav 138
                 +++ G +  G ++la+aI + +
  KKY16412.1 956 LLVRGVPGMGQQYLAAAILNHF 977
                 6788**************9865 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0004      0.26       2      32 ..     653     683 ..     652     728 .. 0.91
   2 ?   -1.9   0.0       4.5   2.9e+03       2      22 ..     956     976 ..     955     984 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0004
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqf 32 
                 vl++g PG++ktll++ala++++ + +++ f
  KKY16412.1 653 VLFHGPPGTGKTLLARALASSVSSQGQKVTF 683
                 7899********************9999987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4.5
       AAA_3   2 vllegvPGlaktllvkalaka 22 
                 +l++gvPG+++  l+ a+ ++
  KKY16412.1 956 LLVRGVPGMGQQYLAAAILNH 976
                 699********9998877655 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0026       1.6      24      51 ..     652     679 ..     642     696 .. 0.79
   2 ?   -2.0   0.0       4.1   2.6e+03      92     107 ..     713     728 ..     697     789 .. 0.62
   3 ?    0.2   0.0      0.86   5.5e+02      22      45 ..     953     976 ..     937     986 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0026
                      -EEEECSTTSSHHHHHHHHHHHSTTTTS CS
  Sigma54_activat  24 svlitGesGtGKellaraiheaskrkek 51 
                       vl +G  GtGK+llara+ ++ + + +
       KKY16412.1 652 GVLFHGPPGTGKTLLARALASSVSSQGQ 679
                      599***************9885544433 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.1
                      TTTSEEEEETGGGS-H CS
  Sigma54_activat  92 adgGtlfLDeigelpl 107
                      ++ +++f+Dei  l +
       KKY16412.1 713 TQPSIIFFDEIDGLAP 728
                      3457899999987764 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.86
                      SS-EEEECSTTSSHHHHHHHHHHH CS
  Sigma54_activat  22 dlsvlitGesGtGKellaraihea 45 
                      + ++l++G  G G ++la ai ++
       KKY16412.1 953 RPRLLVRGVPGMGQQYLAAAILNH 976
                      4678***************99764 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0    0.0015      0.99      24      76 ..     653     708 ..     649     743 .. 0.69
   2 ?   -0.0   0.0       1.4   8.6e+02      21      66 ..     953     999 ..     939    1025 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0015
                      EEEEEETT--HHHHHHCC--T..TS-EE--SSTTHHHH-HHHHHHHTTTSE.EEEE CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhkn..sgpwleifvverlaklpldlleqakggt.Lylk 76 
                      v+  G++G+gk+l Ar+L+++  s+++   f + ++a++ ++++ +a+ ++ L+++
       KKY16412.1 653 VLFHGPPGTGKTLLARALASSvsSQGQKVTFYMRKGADALSKWVGEAERQLrLLFE 708
                      8899**************98621444555677888888888887776433213333 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.4
                      SS-EEEEEETT--HHHHHH.CC--TTS-EE--SSTTHHHH-HHHHHH CS
  Sigma54_activ_2  21 klpvfltGekGsgkelvAr.lLhknsgpwleifvverlaklpldlle 66 
                         +++ G +G g+++ A  +L +++g  ++ f++ +l +   ++ e
       KKY16412.1 953 RPRLLVRGVPGMGQQYLAAaILNHFEGLHVQSFDLPTLLSDSTRSQE 999
                      5678999*******998751678888888888888776655544433 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00052      0.33       5      40 ..     654     688 ..     651     741 .. 0.76
   2 ?   -2.9   0.0       4.9   3.1e+03       5      25 ..     957     977 ..     956    1002 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00052
     DUF2075   5 lVtGvaGtGKtvvllnllaeleddeeertavylsvN 40 
                 l +G +GtGKt+++ +l+  + +++ ++ + y+ + 
  KKY16412.1 654 LFHGPPGTGKTLLARALASSV-SSQGQKVTFYMRKG 688
                 668*****************9.45555555555444 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.9
     DUF2075   5 lVtGvaGtGKtvvllnllael 25 
                 lV+Gv+G G  +++ ++l+  
  KKY16412.1 957 LVRGVPGMGQQYLAAAILNHF 977
                 8**********9999999876 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0019       1.2      57      86 ..     654     683 ..     646     691 .. 0.88
   2 ?   -0.7   0.0       2.2   1.4e+03      58      77 ..     958     977 ..     947     986 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0019
                 EEEE-TTSSHHHHHHHHHHHHSTTGGGSTT CS
      Torsin  57 sfhGwtGtGknfvaeiiaenlyrdGlrsdy 86 
                  fhG +GtGk  +a+ +a  +  +G + ++
  KKY16412.1 654 LFHGPPGTGKTLLARALASSVSSQGQKVTF 683
                 69******************9999987665 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2.2
                 EEE-TTSSHHHHHHHHHHHH CS
      Torsin  58 fhGwtGtGknfvaeiiaenl 77 
                 + G +G G++++a  i ++ 
  KKY16412.1 958 VRGVPGMGQQYLAAAILNHF 977
                 679***********999874 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00058      0.37      23      48 ..     654     679 ..     647     704 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00058
                 EEE--TTSSTTHHHHHHHHHHHHTTS CS
        PhoH  23 faiGpaGtGKtylavalavealkkkk 48 
                    Gp GtGKt+la ala ++ ++++
  KKY16412.1 654 LFHGPPGTGKTLLARALASSVSSQGQ 679
                 678***************98888765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00053      0.34      34      62 ..     651     679 ..     640     724 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00053
       AAA_7  34 kpvllvGptGtGKtviikdllkkldkeky 62 
                 + vl+ Gp GtGKt++++ l ++++++  
  KKY16412.1 651 RGVLFHGPPGTGKTLLARALASSVSSQGQ 679
                 679****************9999985443 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.7       2.8   1.8e+03     131     195 ..       9      73 ..       6      82 .. 0.81
   2 ?    1.4   2.4      0.36   2.3e+02      81     185 ..     233     351 ..     223     366 .. 0.48
   3 ?   10.6   0.0   0.00055      0.35      20      44 ..     653     677 ..     644     709 .. 0.79
   4 ?   -1.4   0.2       2.6   1.6e+03     149     198 ..    1116    1185 ..    1057    1185 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.8
      AAA_11 131 keleklakelrafeeeeekeklkkskekskskleqerrklkkerkelskeleeaeesleeevlde 195
                 ++le++a++ ++++ +  +++   s++++++k+ ++ +  +++  + s+++e++e+ ++ee  +e
  KKY16412.1   9 RTLEEIANADDSDDTDYDDRSAVPSRRHKRAKMGKKPSRRRRAYGSGSDDIESDEDDISEESFNE 73 
                 55666666666666666679999999999999999999999999999999999999998876665 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.36
      AAA_11  81 segekykpkivRvgnee......eriseavksvsleekvekrlekee.........kaqlakeiskeleklakelrafeeeeekeklkkskekskskle 164
                 +e ++++ k++ +g +e       +++++  + ++ + +++ +++ +         ++ +a+++++e ++ +++ +++    +k+k++ s+ +  + + 
  KKY16412.1 233 EESAESNGKLLDIGEPEigasqdVATTTE-VEKTIPRLLSDIQDAAMevdeaevedTNIIAESMHEEDAEAEDDDEDDGPITSKRKTRSSQADVPNAED 330
                 55555556666666666433332111222.222223333333333223333433323333333333333333333333333333555555566666666 PP

      AAA_11 165 qerrklkkerkelskeleeae 185
                 +++++l+  r++l+++++e++
  KKY16412.1 331 EDSEALRPGRRSLRRTVREEK 351
                 666666666666666665555 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00055
      AAA_11  20 tliqGPPGtgKTktivellsqllsr 44 
                 +l++GPPGtgKT    +l s++ s+
  KKY16412.1 653 VLFHGPPGTGKTLLARALASSVSSQ 677
                 699*********9999998888433 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 2.6
      AAA_11  149 k....................eklkkskekskskleqerrklkkerkelskeleeaeesleeevldeaei 198 
                  +                      +k++ + +k+k +++++ lk   + + ++++++ ++ ++ v++e++i
  KKY16412.1 1116 RikrkpeilppappekipepqPLSKEELKMQKRKDRHTLNLLKIRLQPIMDQIRTKYRKFRTGVIEESQI 1185
                  2666666666666666666664555566666666777777777777777777777777777888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1718 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1224  (0.0682693); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 1.23u 0.36s 00:00:01.59 Elapsed: 00:00:00.60
# Mc/sec: 8671.50
//
Query:       KKY16413.1  [L=1364]
Description: putative protein cft1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-96  323.0   0.0    4.5e-95  318.6   0.0    2.2  2  CPSF_A    CPSF A subunit region
  ------ inclusion threshold ------
       0.19   12.1   0.0       0.37   11.1   0.0    1.4  1  TruB_N    TruB family pseudouridylate synthase (N terminal do


Domain annotation for each model (and alignments):
>> CPSF_A  CPSF A subunit region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.012   1.1e+02      64      99 ..      35      71 ..      16      99 .. 0.77
   2 !  318.6   0.0   5.1e-99   4.5e-95       2     322 .]     988    1329 ..     987    1329 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.012
                EEEEEEEEEE-.SS--EEEEEEEEEEEES----EEEE CS
      CPSF_A 64 Grilvfeiiev.petnrkLklvhkeevkgavtalaef 99
                + + vf+++   + t+ kL lv ++ v g++tal+ +
  KKY16413.1 35 SLLQVFRLKALeQATKPKLVLVSEHHVAGTITALSRV 71
                5566666666556778889999999999999998876 PP

  == domain 2  score: 318.6 bits;  conditional E-value: 5.1e-99
                  -EEEEE-T..TT-EEEEE--TTEEEEEEEE--B-SSTTT---B--EEEEEEE---SSS--E.EEEEEEEEEE-......SS--EEEEEEEEEEEES- CS
      CPSF_A    2 ssiklvdpiskeeidsleLeenEavlsvksvelessettkekkellvVGtafnlgedpaarsGrilvfeiiev......petnrkLklvhkeevkga 92  
                  s++++++ +s + ++++ +e++E+++++k+++le+se t+e+k+l+vVGta+++ged+++r G +++f+i +v       et+ kLkl++ke+vkga
  KKY16413.1  988 STLRVLSRTSLSFTSAYRFEPDERIMCLKTLNLEVSEITHERKDLVVVGTAVTRGEDISTR-GGLYIFDIVDVvpepdiDETDMKLKLIAKEDVKGA 1083
                  8899****999999***********************************************.*****************9***************** PP

                  ---EEEE..TTEEEEE-SSEEEEEEE-TTS-EEEEEEEE-SS-EEEEEEETT..EEEEEESSS-EEEEEE-SSS--EEEEEEESS---EEEEEEE-- CS
      CPSF_A   93 vtalaef..qGrllvgvgqkvrvydlgedktLlrkafldtqlyvvslkvlgn..riivgDlmkSvtfveydeenyklilfardtqkrwvtaaeflvd 185 
                  vt+++++  qG+l++++gqk++v++l+ed+t+l++afld+++yv  +k+l++  ++i+gD++++++f +y+ee+ykl ++++d+  ++v+aa+fl+ 
  KKY16413.1 1084 VTSVSQVgsQGYLIAAQGQKCMVRGLKEDNTILPVAFLDMNYYVNVIKELKGtgLCILGDACHGLWFTGYSEEPYKLQVLGKDVDDMEVMAADFLPI 1180
                  **************************************************8888*****************************************99 PP

                  SSS.EEEEEETTSEEEEEE--TTSGGGTTTT.EEEEEEEEE-SS----E...EEEE.SSS--S..................-EEEEEE-TTS-EEEE CS
      CPSF_A  186 ged.tvlvaDkfgnlfvlrydpeasessdgdprleeraefhlgeivtslrkgslvpgeaesss..................spqllyatldGsigll 263 
                  +++ +++ aD +g l+v++ydpe+++ss g+  l++r++fh+g ++ts+   sl+p+ + s s                  ++qll+++++G+i l+
  KKY16413.1 1181 DRQlYIVSADGNGDLHVFQYDPENPKSSRGT-ELLHRSTFHTGYFPTSV---SLIPRTPVS-SelaaadsvgdmdvdvkvsEQQLLLTSQEGAIALI 1272
                  999****************************.*****************...****54444.33678999*************************** PP

                  EE.--HHHHHHHHHHHHHHHHHS--SSS--HHHHS---..----.---EEHHHHHHHHH CS
      CPSF_A  264 vPliseeeyrrlqaLqqqLrkelkhlgGldhrafRsyyspkseevkgviDgdllerfld 322 
                  +P +se++yrrl++Lq+ L+++l+h++Gl++ra+Rs++++     + ++Dg+ll+r+ld
  KKY16413.1 1273 TP-LSEQAYRRLSTLQNLLVTNLEHPCGLNPRAYRSAETD-GVGGRAMLDGNLLRRWLD 1329
                  **.**********************************974.444*************96 PP

>> TruB_N  TruB family pseudouridylate synthase (N terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.2e-05      0.37      15      61 ..     604     651 ..     600     665 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.2e-05
                 --TT-EEEEEEE.EGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS CS
      TruB_N  15 LDplatGvLvva.vgeaTklleylleadKeYeatirlgaetdteDaeg 61 
                  Dp a G + v+ v ++T+++++l+ + K+Y+at+ l +     D++ 
  KKY16413.1 604 FDPSAGGTIAVGsVAQGTRVVQVLSGELKSYDATFGLSQIHPIVDEDM 651
                 69******99964899*******************9988777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.34s 00:00:01.30 Elapsed: 00:00:00.57
# Mc/sec: 7248.46
//
Query:       KKY16414.1  [L=598]
Description: putative lmbr1 domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-18   67.6  22.0    7.1e-18   64.8  17.7    2.7  2  LMBR1      LMBR1-like membrane protein
  ------ inclusion threshold ------
       0.77    9.7   4.6        8.4    6.3   1.3    3.6  3  TMEM154    TMEM154 protein family


Domain annotation for each model (and alignments):
>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8  17.7   7.9e-22   7.1e-18       4     461 ..      27     452 ..      25     462 .. 0.71
   2 ?   -1.2   0.1      0.08   7.2e+02     133     147 ..     533     547 ..     491     561 .. 0.64

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 7.9e-22
       LMBR1   4 iillllflllfllallllrrykrkkdqeavvkllvllalalsflivlllPlDiastiyrq.........nealypcsyylqwlseslikvlWrivYwls 93 
                 ++ ++++ ll+++++++++ y+++++++a v+ ++ +++   +++vlllP+D+a  + +                 +  +  +++  ++ ++ ++Y l+
  KKY16414.1  27 VVYAVVVALLLIISAVFVYIYQTPRERSASVTTVCIFTITALLATVLLLPVDVALVSSTVsskngtrksW----ATQDRVDSITY-TLEIVYYTLYSLD 120
                 57789999*********************************************99333335444433220....23333344442.37899******** PP

       LMBR1  94 nlllwiilPfaqfYvesggftgkgklkrslyenaiiyllllvivlglliyvliil...................qklsllsiksllpilislantwGlv 173
                  ll+ i++Pf++f++e  +   ++ + +++ +++   + +++++++l+i+++++                    + ls +  +  l+++  l  t+G++
  KKY16414.1 121 ALLCLIVVPFTYFFYEEYDEVASEEGTQTFGSRLWGAFKYTIVFVALVIILFLVGffvpvakkakghydldylkYLLSENHGERALTFALGLLITIGII 219
                 ****************99999999996665666666666666666666666666567779************9755555544599************** PP

       LMBR1 174 llilllGyGlvelPrslwreiksdldeelkklyfeaaklntekeeaereledllkevkklrksisesdplrkyleeilkkvPeeiaeklksnenktees 272
                 +  l +G Gl+ lP++ ++  ++ + +     +  aa+l+ e  e +r+le           + +                              +++ 
  KKY16414.1 220 IYCLYTGAGLALLPLTFIK--SAPSVSAPALHESTAAQLE-ENRERQRQLE----------GRNQG-----------------------------NQNG 276
                 *******************..4444422222222333333.2233344444..........33322.............................4469 PP

       LMBR1 273 laklekqlikalqkrertekqwkrllekalelediiknksskekefksses.srrgefakqgklkltptleyywaklllplvllilsiilvllsiiiil 370
                 l++  ++  +al ++ert  + +rl ++a                     s + r++f+k   ++ +  +  +++ +   +v li+++++++ ++i+ +
  KKY16414.1 277 LSSKDRRELEALVREERTLVRRERLAQEA---------------------SgEGRSWFIKA--WLKFEAFFRPLKLIGG-FVILIVALLVWISMLITGI 351
                 9999999999999****************.....................33667777766..5567777777774444.4444444433333333333 PP

       LMBR1 371 seltklle............kppls..lfalfievsaessfglfga.elieillilYlmlcayvglfklkl.pnfyrlap..hhqTdmsslifnaalll 451
                     k               + ++   l+ +f+     +s ++f +  ++++ll+l +   ++vgl  l++ +   ++ +  +++T+ + l+  a ll 
  KKY16414.1 352 D---KAKNsickarcgyllgEINIFqpLNWIFV-----KSAKVFPIdYVLFVLLVLLFFSGSVVGLAALGIrFLWLQIFRirQGHTSPQALLLAAELLT 442
                 2...22223346777777553333333555555.....4444555522677777777778899****999996666665555599************** PP

       LMBR1 452 rltsPlclnf 461
                 ++t +l + +
  KKY16414.1 443 LITLALNYSI 452
                 *999987766 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.08
       LMBR1 133 llvivlglliyvlii 147
                 +++++l l++++l++
  KKY16414.1 533 FAFLLLFLIVFLLTL 547
                 222222222222222 PP

>> TMEM154  TMEM154 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   1.3   0.00093       8.4      57      89 ..      21      53 ..       8      61 .. 0.83
   2 ?    1.4   0.0     0.031   2.7e+02      64      87 ..     162     185 ..     154     193 .. 0.79
   3 ?   -1.4   0.0      0.22     2e+03      69      92 ..     535     557 ..     532     572 .. 0.50

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00093
     TMEM154 57 elvlmiiiPlvllillllvviiliqkkkrkrsK 89
                +  l+ ++ +v+++lll++ ++++ +++  r++
  KKY16414.1 21 QTTLIWVVYAVVVALLLIISAVFVYIYQTPRER 53
                4579999*****************998877765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.031
     TMEM154  64 iPlvllillllvviiliqkkkrkr 87 
                 i  v+l+++l++v +++ + k+ +
  KKY16414.1 162 IVFVALVIILFLVGFFVPVAKKAK 185
                 557899999999988887776655 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.22
     TMEM154  69 lillllvviiliqkkkrkrsKdde 92 
                 ++ll+l+v  l + +k  +   d 
  KKY16414.1 535 FLLLFLIVF-LLTLFKTPKMDTDA 557
                 445555554.44465555544442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1422  (0.0793128); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.43s 00:00:01.28 Elapsed: 00:00:00.57
# Mc/sec: 3154.33
//
Query:       KKY16415.1  [L=455]
Description: hypothetical protein UCRPC4_g05924 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.013   16.2   0.3         10    6.8   0.1    2.9  2  Zn_ribbon_2  Putative zinc ribbon domain
      0.015   15.5   0.8      0.032   14.5   0.8    1.5  1  CEBP_ZZ      Cytoplasmic polyadenylation element-binding prot


Domain annotation for each model (and alignments):
>> Zn_ribbon_2  Putative zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1    0.0012        10      16      34 ..     367     385 ..     357     390 .. 0.81
   2 ?    6.1   0.0     0.002        18      25      70 ..     398     443 ..     392     449 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0012
  Zn_ribbon_2  16 gteadgsksedYCkyCykd 34 
                  +  +d++++++YC  C++d
   KKY16415.1 367 SAPQDEEEEDQYCVICFAD 385
                  66789999*********98 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.002
  Zn_ribbon_2  25 edYCkyCykdGeftepdl..tmeemiekcvkklaeenkelteeearkl 70 
                  + YC+ C ++G+  e d+  +m +  + +++k ++e+k ++ee a+k+
   KKY16415.1 398 DLYCNLCWNEGHRGE-DVgrEMRSHRALVLNKGDDEKK-AKEEAAKKI 443
                  67*********9887.5422555555666666666654.666667666 PP

>> CEBP_ZZ  Cytoplasmic polyadenylation element-binding protein ZZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.8   3.5e-06     0.032      10      59 ..     375     425 ..     374     427 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.5e-06
     CEBP_ZZ  10 edseCeiCekakargpyfCrdlaC.fkYyCetCwqrrH...saeskeaaHrplv 59 
                 ed+ C iC   +    + C  + C    yC+ Cw++ H     ++++++Hr lv
  KKY16415.1 375 EDQYCVICFADP---TVRCLGSGCdGDLYCNLCWNEGHrgeDVGREMRSHRALV 425
                 5779****9998...8899999994479**********6665667888999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.52
# Mc/sec: 2625.35
//
Query:       KKY16416.1  [L=346]
Description: putative pathogen-related protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0023   17.7   0.0     0.0048   16.7   0.0    1.6  1  SnoaL     SnoaL-like polyketide cyclase


Domain annotation for each model (and alignments):
>> SnoaL  SnoaL-like polyketide cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.7e-07    0.0048      41      99 ..     136     194 ..     125     231 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.7e-07
                 HHHHHHHHHHHHHCTTCEEEEEEEEEETTEEEEEEEEEEEESSEBTTBE-TT-EEEEEE CS
       SnoaL  41 egfrafveelfkafPDlkvevedlvaegdkvaarltftGthtgeflGipptGkkvkfee 99 
                 ++f +  +++++ +P+++ ev ++++  + va r++  G +++ ++G   +G k+++++
  KKY16416.1 136 SDFEKSHKTFRDMMPNFAWEVLEVYSPPPVVAFRWRHWGVMKSDYIGWNNNGEKITIKG 194
                 677788899**************************************888887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.51
# Mc/sec: 2056.27
//
Query:       KKY16417.1  [L=331]
Description: putative dihydroxyphthalate decarboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00042   20.3   0.0     0.0029   17.6   0.0    2.1  2  NMT1       NMT1/THI5 like
  ------ inclusion threshold ------
      0.027   13.9   0.0      0.071   12.5   0.0    1.6  1  SBP_bac_3  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.2e-07    0.0029      76     127 ..      88     140 ..      19     148 .. 0.73
   2 ?    0.4   0.0     0.057   5.1e+02     129     147 ..     168     186 ..     156     252 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.2e-07
                 EEEEECCC--SSGGGGTTSEEEE-S-TTHHHHH.HHHHHHTT--GGG-EEEE- CS
        NMT1  76 glivlkdsgikspkDLkGkrigyvgspfekall.kallakdggdpsdvtlvnv 127
                 g+i+  +  +k+p+DL+Gkrig++    + a+  + ll++ g+d s +t v+ 
  KKY16417.1  88 GYIAVNEWTVKRPSDLEGKRIGVQLYTMTAAVYqRGLLQQLGLDLSTITWVEG 140
                 456666667**************99666666651679***********99976 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.057
                 TT-HHHHHHCTSSSEEECE CS
        NMT1 129 gtslakalltgkvDaaigg 147
                   sl++ l +g++Da+ig+
  KKY16417.1 168 AKSLSQMLEDGEIDATIGA 186
                 5677788999*****9975 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.9e-06     0.071     101     159 ..      96     186 ..      84     199 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.9e-06
                 CHSSCGCGTTSEEEEETTSHHHHHHHHHHHC....TSEE..............................EEESSHHHHHHHHHTTSSSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxx..............................xxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 101 siksladLkgkkvgvqagstaeellkeelkk....gaei..............................vefdtleealqaLkngrvdavvad 159
                 ++k ++dL+gk++gvq  + +++ +++ l +    +  +                              ++  t  ++ q+L++g++da+++ 
  KKY16417.1  96 TVKRPSDLEGKRIGVQLYTMTAAVYQRGLLQqlglD--LstitwvegamekpgahgspsalsplkpvniQRNRTAKSLSQMLEDGEIDATIGA 186
                 577899************999988887555555441..2445556666666777777777777777664677788888889********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2204.07
//
Query:       KKY16418.1  [L=434]
Description: putative mfs transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-29  100.4  20.6    1.2e-28  100.1  20.6    1.0  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1  20.6   6.4e-33   1.2e-28       5     352 ..      57     425 ..      53     426 .. 0.83

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 6.4e-33
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlgagal 102
                  f++ l+r+++g a  + l edl ++++ ++++lt++++ +++ ++p   + +++G+ r+l   ++++++  ++++++  s+  ll++r++ Gl++g++
  KKY16418.1  57 WFFAQLDRANIGNANIEGLPEDLKLDGDKFNIALTIFYVPYVIVAIPSNLILTNVGAGRYLPSLAIAWGIIdTCMGSV-KSYGGLLACRFFLGLCEGGM 154
                 58899999999999999999***************************************************8888884.7777**************** PP

       MFS_1 103 fpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.........Wravfyilaivsllafvlfllllpeepperkrkspkeee.... 188
                 + ++++++a  + + + ++ + ++  ++ ++  +  ll   +    +         W++vf+i ++++++++++++l+lp +p +    +++e++    
  KKY16418.1 155 IGGMVIYLAMFYRRHQFSLQVTMFFYTSPFSKTVDGLLTTGF----SeiefngynrWPWVFFIEGAITIIFGIIAFLYLPSTPATACFLNEEEKRlaih 249
                 ************996666666555555555555555555555....5555679********************99999999999999999999989999 PP

       MFS_1 189 ................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrl 271
                                      +++  +  a+l+++  + + i+ +l+ + ++++  +lp+   + l++s  ++a l+   + ++g+   l a+++sdrl
  KKY16418.1 250 rmtldfhhsddtdnteD--DTFSWHWVRLAILNPNACL-CGISNFLIITPTYSYGLFLPTV-IKALDYS-RVTAQLFTVPPNALGFLTTLSASYYSDRL 343
                 99988887777666333..3333333447777777333.33333333346666*******7.*******.466666677778888888*********** PP

       MFS_1 272 grrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdla.ppeeagtasglfntagslggalg 352
                   r + +l++l+++++  +++++a+ + + +++ + +++  g + v+p+++a++++++ p   ++t +g+  t+ ++++++g
  KKY16418.1 344 RLRSPFMLSGLVVTIIGYAMLIAAPVHRPGISYTGTFFVAAGIFSVTPIIMAWLANNLrPHYVRATGNGFQITMANFSAFVG 425
                 **999999999999999999999999********************************6667889***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2826.68
//
Query:       KKY16419.1  [L=563]
Description: hypothetical protein UCRPC4_g05928 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.079   13.0   0.0       0.19   11.8   0.0    1.6  1  Strep_his_triad  Streptococcal histidine triad protein


Domain annotation for each model (and alignments):
>> Strep_his_triad  Streptococcal histidine triad protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.1e-05      0.19       8      42 ..       5      40 ..       4      44 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.1e-05
  Strep_his_triad  8 Fdpediisdegd.gyivphgdhlHyIpksdLsesEl 42
                     F+ +d+is+ g+ g++v   + + +++ +dL+ sE 
       KKY16419.1  5 FSHSDVISELGRrGFSVVSDEAYKMVESDDLTSSEA 40
                     9**********99*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3597.70
//
Query:       KKY16420.1  [L=416]
Description: hypothetical protein UCRPC4_g05929 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.02   13.1   1.0      0.025   12.8   1.0    1.1  1  Nop14        Nop14-like family
        1.8    7.7   4.2         20    4.3   3.3    2.1  2  Zip          ZIP Zinc transporter
        5.4    6.7  13.4        3.2    7.4  10.1    2.0  2  Cwf_Cwc_15   Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.0   4.1e-06     0.025     343     400 ..      65     121 ..      34     206 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.1e-06
       Nop14 343 taeeeeeededdfeedddlveseseeeeeeeeedeeeeedeeeee.eeeededdlsdle 400
                 +a+ +++++ d++++++d v s+s+e+   ++ed++  +de  ++ +e  dedd++d++
  KKY16420.1  65 SAAGSSQDEYDESSSESDRVMSSSNEDVGHQNEDNSPPQDERHDSaDE--DEDDEDDTS 121
                 343447777788888888888888888844444444444444443222..223322222 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   3.3    0.0033        20     114     183 ..      54     123 ..      40     151 .. 0.77
   2 ?    2.1   0.0     0.016        93     130     195 ..     289     353 ..     256     376 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0033
         Zip 114 asssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseeedkeklaslk 183
                 a++ +s +++++ + +++ e++e + + ++   ++++ + ++ +++++++++++ +a+e+ed+e+++s +
  KKY16420.1  54 ANNMRSSPRPASAAGSSQDEYDESSSESDRVMSSSNEDVGHQNEDNSPPQDERHDSADEDEDDEDDTSTA 123
                 5555566666666666666666666667777788888888888888888888888888888887776654 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.016
         Zip 130 dkveeseekedhvaeadtdadskeelrngkqeksesekeqaseeedkeklaslkvraiilllglil 195
                  ++++ + k + +a a+ +a  ++++ + ++++ +s++++  +++ +e++ s  ++++++  g+++
  KKY16420.1 289 APSPPASVKANLAAVAKRKAVRESSKDRHSKKSRGSSAARG-NSSVDESAISPTLMTWMVSAGVVI 353
                 34444444444444444444444444444444444444443.477778888888888888777654 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  10.1   0.00054       3.2      84     147 ..      66     121 ..      17     125 .. 0.44
   2 ?   -0.5   0.1      0.14   8.2e+02     163     188 ..     306     331 ..     280     340 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00054
                 ------------------------..-------------------------------------- CS
  Cwf_Cwc_15  84 ekkeeeeeeeeeeakrrkeelleeareidaddedseeeeeeeeeesdddsdsdsdddddedeta 147
                 ++ ++++e++e++++  +         + + +ed  +++e+++  +d+ +ds ++d+dded+t 
  KKY16420.1  66 AAGSSQDEYDESSSESDR--------VMSSSNEDVGHQNEDNSPPQDERHDSADEDEDDEDDTS 121
                 111222222222222222........22222222222233333555556666666666666664 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.14
                 -------------------------- CS
  Cwf_Cwc_15 163 ekerkerekaeeeekereeeiatgNp 188
                  k+ +e++k+++++k+r +++a+gN+
  KKY16420.1 306 RKAVRESSKDRHSKKSRGSSAARGNS 331
                 33334444555556666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1148  (0.0640303); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.35s 00:00:01.06 Elapsed: 00:00:00.51
# Mc/sec: 2441.68
//
Query:       KKY16421.1  [L=490]
Description: putative nucleolin protein nsr1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-41  138.4   0.0    2.4e-19   68.9   0.0    2.5  2  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    0.00013   22.0   0.0       0.22   11.7   0.0    2.5  2  RRM_7         RNA recognition motif
  ------ inclusion threshold ------
      0.027   14.3   0.0        1.2    9.0   0.0    2.5  2  RRM_occluded  Occluded RNA-recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.0   3.9e-23   2.4e-19       1      69 [.     245     314 ..     245     315 .. 0.99
   2 !   67.1   0.0   1.5e-22     9e-19       1      70 []     349     419 ..     349     419 .. 0.98

  Alignments for each domain:
  == domain 1  score: 68.9 bits;  conditional E-value: 3.9e-23
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 lfVgnL+++v+e+ L + F+++G+ + +++v+d   g+skgf++Ve+ +  dA+kA +a  g++l+gr +
  KKY16421.1 245 LFVGNLSWNVDEQWLTQEFEEYGELSGVRIVTDrDSGRSKGFGYVEYVNAADAAKAYAAKKGYELDGRAI 314
                 8*******************************************************************98 PP

  == domain 2  score: 67.1 bits;  conditional E-value: 1.5e-22
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 lf+gnL+++vt++ ++e F ++G ++ ++l++d  tg +kgf++V++ s ++A++A ea++g+ l gr+l+
  KKY16421.1 349 LFLGNLSFEVTQDIVSEAFAEYGTVTGVRLPTDrDTGAPKGFGYVTYSSVDEAKAAFEAMQGYDLTGRPLR 419
                 89******************************************************************986 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   3.7e-05      0.22       3      28 ..     244     269 ..     242     292 .. 0.92
   2 !    7.8   0.0   0.00057       3.4       2      35 ..     347     381 ..     346     413 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.7e-05
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkv 28 
                  +FvG l ++++e+ l++ f+e+g++
  KKY16421.1 244 NLFVGNLSWNVDEQWLTQEFEEYGEL 269
                 58**********************87 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00057
       RRM_7   2 rkvFvGGlPiDiteeelkatfkefgkvl.vdwPkk 35 
                   +F+G l  ++t++ ++++f e+g+v+ v  P  
  KKY16421.1 347 ETLFLGNLSFEVTQDIVSEAFAEYGTVTgVRLPTD 381
                 678**********************9864666654 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0002       1.2      15      69 ..     256     315 ..     245     317 .. 0.72
   2 ?    2.6   0.0     0.021   1.2e+02       3      68 ..     348     418 ..     346     420 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0002
  RRM_occluded  15 kariralveekegeikkivLvpdheG......AivefkdekiagkasLaLdgsefegkklr 69 
                   ++ +++ +ee+ ge+  + +v+d  +        ve+ ++++a+ka  a +g+e++g+ ++
    KKY16421.1 256 EQWLTQEFEEY-GELSGVRIVTDRDSgrskgfGYVEYVNAADAAKAYAAKKGYELDGRAIN 315
                   55556666666.7777777777655422222347************************997 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.021
  RRM_occluded   3 tisllplsDtvnkariralveekegeikkivLvpdhe.GA.....ivefkdekiagkasLaLdgsefegkkl 68 
                   t+ l +ls  v+++ +++ + e+ g ++ + L +d   GA      v ++++  a  a  a++g++++g+ l
    KKY16421.1 348 TLFLGNLSFEVTQDIVSEAFAEY-GTVTGVRLPTDRDtGApkgfgYVTYSSVDEAKAAFEAMQGYDLTGRPL 418
                   7778899999*************.****99999997424433333455555544444444566666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2130  (0.118802); expected 358.6 (0.02)
Passed bias filter:                      714  (0.0398237); expected 358.6 (0.02)
Passed Vit filter:                       341  (0.0190195); expected 17.9 (0.001)
Passed Fwd filter:                       196  (0.010932); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.65u 0.39s 00:00:03.04 Elapsed: 00:00:00.71
# Mc/sec: 2072.05
//
Query:       KKY16422.1  [L=396]
Description: putative glucosyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-52  177.3  17.0    2.2e-45  155.6  10.4    2.3  2  Alg6_Alg8  ALG6, ALG8 glycosyltransferase family
  ------ inclusion threshold ------
        1.5    8.8   5.2        2.2    8.2   2.0    2.8  3  UPF0139    Uncharacterised protein family (UPF0139)


Domain annotation for each model (and alignments):
>> Alg6_Alg8  ALG6, ALG8 glycosyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.5   5.7e-10   5.1e-06     180     232 ..       1      47 [.       1      66 [. 0.86
   2 !  155.6  10.4   2.4e-49   2.2e-45     235     482 ..      92     326 ..      81     330 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 5.7e-10
   Alg6_Alg8 180 ialylApayfvylLrkyclkkskkklkvslkrllklgvvvlavfallfgPfla 232
                 +aly++p++f+ylL+++ ++      +++  rl+ +g+v++++f++lf+P+l 
  KKY16422.1   1 MALYYSPVVFAYLLGAC-FS-----PSIRPGRLILIGAVTIISFVVLFAPLLL 47 
                 89***************.73.....35799********************983 PP

  == domain 2  score: 155.6 bits;  conditional E-value: 2.4e-49
   Alg6_Alg8 235 eqlkqvlsRlFPfkRGLfedyvApNfWalynvv.dkvlevvlkkaevasltrglvqdvsflvlpeilpkltllltllailpslvklllkpskklfllal 332
                  q++q + R+FPf+RGLfed+vA NfW+++n + +k+                       l ++  lp+l+l +tl+ i p+ + ll++p+k+ +l al
  KKY16422.1  92 LQASQSVYRIFPFARGLFEDKVA-NFWCVLNHAvIKLSA---------------------LPTSIPLPRLSLYFTLIPISPASIILLINPRKSILLPAL 168
                 4899*******************.*****9976266666.....................8888899******************************** PP

   Alg6_Alg8 333 vlcalsfFlfsfhVHEKaiLlvllpltllalesre....dlslvlllsvvgtfslfPLlfkdgellikvvltllwlllll..........lslkklvkk 417
                 ++ca++fFlfsf+VHEK++Ll+llp+tll+ +++        +v l++++gt++l+PLl++d++  +++v+t+lw +ll+             ++++++
  KKY16422.1 169 ASCAWGFFLFSFQVHEKSVLLPLLPMTLLLFSNKGlspsIRAWVGLANILGTWTLYPLLKRDDLRTPYAVITFLWSYLLGlpptsislyiP-QTSAMTN 266
                 ******************************9887666656778889999***************************999999987776542.2222233 PP

   Alg6_Alg8 418 slkkkkkkvlldrleklyllsllallvllvllellvlkkpperlpflplllisvycsvgvfvlfl 482
                 + +++ + +ll++l  +++  ++a+l ++  le ++  +pp++ p+l+++l++++ ++g+ +++l
  KKY16422.1 267 EATTSDTPNLLTTL--THISLYAAMLFWH-ALETFL--PPPQNKPDLWVVLNVIIGAAGFSLCYL 326
                 33333555667777..5666666678888.999999..899**************7777666554 PP

>> UPF0139  Uncharacterised protein family (UPF0139)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.1   9.2e+02       9      38 ..     252     281 ..     250     296 .. 0.73
   2 ?    8.2   2.0   0.00024       2.2      26      56 ..     304     334 ..     293     363 .. 0.89
   3 ?   -1.8   0.1      0.33     3e+03       5      26 ..     348     369 ..     344     376 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.1
     UPF0139   9 ekakrykppalssqkedltpdymnllgmif 38 
                 +++  y p++++ ++e++t d  nll+ + 
  KKY16422.1 252 TSISLYIPQTSAMTNEATTSDTPNLLTTLT 281
                 567778888888889999999999998764 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00024
     UPF0139  26 ltpdymnllgmifsllglmlklkwcaWvalv 56 
                  +pd + +l +i++  g+ l + wc+W  ++
  KKY16422.1 304 NKPDLWVVLNVIIGAAGFSLCYLWCTWKVVL 334
                 679************************8665 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.33
     UPF0139   5 prrpekakrykppalssqkedl 26 
                  r++++ k+ k+ +l+sqk+ +
  KKY16422.1 348 QRKAKNQKKTKQLQLQSQKQHQ 369
                 5666666666666666663333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2476  (0.1381); expected 358.6 (0.02)
Passed bias filter:                     1304  (0.0727313); expected 358.6 (0.02)
Passed Vit filter:                       125  (0.00697194); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.35s 00:00:01.17 Elapsed: 00:00:00.53
# Mc/sec: 2232.76
//
Query:       KKY16423.1  [L=262]
Description: putative translocation protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-67  226.4   0.0    2.5e-67  225.9   0.0    1.2  1  Sec66     Preprotein translocase subunit Sec66


Domain annotation for each model (and alignments):
>> Sec66  Preprotein translocase subunit Sec66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.9   0.0   1.4e-71   2.5e-67       1     177 [.       4     177 ..       4     180 .. 0.97

  Alignments for each domain:
  == domain 1  score: 225.9 bits;  conditional E-value: 1.4e-71
       Sec66   1 kvslytPliYvavligslatfsslyrkrkakklaelepwFpenlqrdiYlsllhlekkkeekvpekvlkAALLrravedirrilklreskpalevllqk 99 
                 ++sl++P++Y+++l+ sl tfsslyrkrka+k+ +l+p+Fp+++ rdiYl+llh     ++k+p++++++AL+ ra e++rril +r +kpal++ll +
  KKY16423.1   4 WISLLIPFAYLGILVASLGTFSSLYRKRKAAKSLHLAPYFPPHTPRDIYLTLLHT---DSPKPPDSIIRSALILRACENVRRILAIRLRKPALQTLLAR 99 
                 89****************************************************9...34599************************************ PP

       Sec66 100 GsvgddlwqrfqraekeleeElkdvvqeaealkpgWgqtifqsaneilanealrrrleeiekrkeeekeewekkkadi 177
                 Gsvgddlwqr+ raekeleeE+kdvv+ea+al++gWgqtifq+a+e+++ e+l+++l +i++++ +ekeew k++ + 
  KKY16423.1 100 GSVGDDLWQRLVRAEKELEEEVKDVVNEANALANGWGQTIFQTASEMVNREMLNEKLGKIRESEGREKEEWIKRRDER 177
                 *************************************************************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1332  (0.074293); expected 358.6 (0.02)
Passed bias filter:                      662  (0.0369234); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 1779.75
//
Query:       KKY16424.1  [L=414]
Description: putative ran gtpase activating protein 1 (rna1 protein) [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-14   52.4   0.3      0.039   14.0   0.0    7.1  6  LRR_6            Leucine Rich repeat
    9.8e-07   29.0   7.5        1.1    9.8   0.3    6.6  7  LRR_4            Leucine Rich repeats (2 copies)
     0.0038   17.5   0.5    1.4e+02    3.7   0.0    5.8  7  LRR_1            Leucine Rich Repeat
     0.0067   15.9   0.3        3.3    7.0   0.1    2.2  2  DUF604           Protein of unknown function, DUF604
     0.0094   16.4  23.1      0.017   15.6  23.1    1.4  1  Prothymosin      Prothymosin/parathymosin family
  ------ inclusion threshold ------
       0.17   11.6   0.0       0.67    9.7   0.0    1.9  2  Nucleocap_ssRNA  Plant viral coat protein nucleocapsid


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0067        20       3      16 ..      31      44 ..      29      52 .. 0.85
   2 !    7.3   0.0    0.0019       5.6       1      16 [.      91     106 ..      91     108 .. 0.90
   3 ?    3.1   0.0      0.04   1.2e+02       2      23 ..     120     141 ..     119     142 .. 0.81
   4 !    5.6   0.0    0.0065        19       2      23 ..     191     212 ..     190     213 .. 0.86
   5 !    7.9   0.0    0.0012       3.6       2      24 .]     220     242 ..     219     242 .. 0.94
   6 !   14.0   0.0   1.3e-05     0.039       2      23 ..     278     299 ..     277     300 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0067
       LRR_6  3 thLteLdLsgNdIg 16
                +++++ dLsgN +g
  KKY16424.1 31 QSIKHIDLSGNTFG 44
                689********998 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0019
       LRR_6   1 snthLteLdLsgNdIg 16 
                 ++++L + dLs+N +g
  KKY16424.1  91 QCPKLHTIDLSDNAFG 106
                 599**********987 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.04
       LRR_6   2 nthLteLdLsgNdIgDeGaeaL 23 
                 +t L++L L+ N++g   ++++
  KKY16424.1 120 HTPLQHLILNNNGMGPIAGTSI 141
                 5789*********998776666 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.0065
       LRR_6   2 nthLteLdLsgNdIgDeGaeaL 23 
                 ++ +++  ++ N+I  eG++ L
  KKY16424.1 191 SRGMKSIKMTQNGIRPEGISHL 212
                 66689999***********987 PP

  == domain 5  score: 7.9 bits;  conditional E-value: 0.0012
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 + +L+  d+++N ++ +Ga+aLa
  KKY16424.1 220 CKSLEVFDMQDNTFTIKGATALA 242
                 789******************98 PP

  == domain 6  score: 14.0 bits;  conditional E-value: 1.3e-05
       LRR_6   2 nthLteLdLsgNdIgDeGaeaL 23 
                 n  L+ L L++NdI+ +G+ aL
  KKY16424.1 278 NKGLEVLRLQYNDIDPKGLVAL 299
                 6779****************99 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.058   1.7e+02      18      33 ..      26      41 ..      19      44 .. 0.75
   2 ?    4.9   0.0     0.013        38       2      33 ..      32      68 ..      31      81 .. 0.65
   3 !    9.8   0.3   0.00035       1.1       2      33 ..      60     103 ..      59     113 .. 0.66
   4 ?    3.7   0.3     0.031        92       3      13 ..     123     133 ..     121     177 .. 0.58
   5 ?    4.7   0.0     0.014        43      13      34 ..     213     232 ..     209     239 .. 0.76
   6 ?    3.7   0.0     0.031        93      22      40 ..     278     292 ..     265     308 .. 0.73
   7 ?   -3.1   0.0       4.3   1.3e+04       7      15 ..     314     322 ..     311     333 .. 0.56

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.058
                -HHH-TT--EEE-.-S CS
       LRR_4 18 lleklpnLkeLdLsgN 33
                +l+   + k++dLsgN
  KKY16424.1 26 PLRETQSIKHIDLSGN 41
                5555678899999998 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.013
                S--EEE--SS---.E-S-.HH...H.-TT--EEE-.-S CS
       LRR_4  2 nLevLdLsnNqlt.dipl.le...k.lpnLkeLdLsgN 33
                + +++dLs+N      +  l+   +   +L+++dL + 
  KKY16424.1 32 SIKHIDLSGNTFGvGASEaLApllSyQQSLESIDL-HD 68
                67899999888662222353344544889999999.43 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00035
                 S--EEE--SS-....--E-S-.HH.......H-TT--EEE-.-S CS
       LRR_4   2 nLevLdLsnNq....ltdipl.le.......klpnLkeLdLsgN 33 
                 +Le++dL++      l +ipl l+       ++p+L+++dLs+N
  KKY16424.1  60 SLESIDLHDIFtsrlLEEIPLaLSalltallQCPKLHTIDLSDN 103
                 56666666522234466677763334445657*********999 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.031
                 --EEE--SS-- CS
       LRR_4   3 LevLdLsnNql 13 
                 L++L L+nN +
  KKY16424.1 123 LQHLILNNNGM 133
                 88999999873 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.014
                 --E-S-HHH-TT--EEE-.-S- CS
       LRR_4  13 ltdiplleklpnLkeLdLsgNn 34 
                 lt+  +l+ +++L+++d+ +N+
  KKY16424.1 213 LTE--GLKACKSLEVFDMQDNT 232
                 554..6667*********8883 PP

  == domain 6  score: 3.7 bits;  conditional E-value: 0.031
                 -TT--EEE-.-S-----GG CS
       LRR_4  22 lpnLkeLdLsgNnlitdld 40 
                 ++ L++L L  N    d+d
  KKY16424.1 278 NKGLEVLRLQYN----DID 292
                 677888888777....776 PP

  == domain 7  score: -3.1 bits;  conditional E-value: 4.3
                 E--SS---E CS
       LRR_4   7 dLsnNqltd 15 
                  L++N+  +
  KKY16424.1 314 ELNGNKFDE 322
                 455555444 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.047   1.4e+02       2      12 ..      33      43 ..      32      54 .. 0.79
   2 ?   -2.4   0.1       4.5   1.3e+04       1       7 [.      60      66 ..      60      75 .. 0.81
   3 ?    2.3   0.0      0.13   3.8e+02       1      12 [.      94     105 ..      94     118 .. 0.82
   4 ?    1.5   0.0      0.24   7.1e+02       2      11 ..     123     132 ..     122     146 .. 0.85
   5 ?   -2.6   0.0       5.1   1.5e+04       1      12 [.     222     233 ..     222     239 .. 0.81
   6 ?    0.5   0.0      0.53   1.6e+03       2      12 ..     281     291 ..     280     310 .. 0.76
   7 ?   -0.1   0.0      0.82   2.5e+03       3      21 ..     311     328 ..     311     333 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.047
       LRR_1  2 LrhLdLsnnpl 12
                 +h+dLs+n +
  KKY16424.1 33 IKHIDLSGNTF 43
                69*******87 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.5
       LRR_1  1 nLrhLdL 7 
                +L+++dL
  KKY16424.1 60 SLESIDL 66
                6999999 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.13
       LRR_1   1 nLrhLdLsnnpl 12 
                 +L ++dLs+n +
  KKY16424.1  94 KLHTIDLSDNAF 105
                 799******976 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.24
       LRR_1   2 LrhLdLsnnp 11 
                 L+hL L+nn 
  KKY16424.1 123 LQHLILNNNG 132
                 9*******96 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 5.1
       LRR_1   1 nLrhLdLsnnpl 12 
                 +L++ d+ +n +
  KKY16424.1 222 SLEVFDMQDNTF 233
                 699999999865 PP

  == domain 6  score: 0.5 bits;  conditional E-value: 0.53
       LRR_1   2 LrhLdLsnnpl 12 
                 L++L L +n +
  KKY16424.1 281 LEVLRLQYNDI 291
                 99*******98 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 0.82
       LRR_1   3 rhLdLsnnpllglppnsfq 21 
                 r++ L++n + + +++s++
  KKY16424.1 311 RRIELNGNKF-DEEDPSIE 328
                 6899****99.66666654 PP

>> DUF604  Protein of unknown function, DUF604
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0013       3.8      57      88 ..      26      57 ..      22      74 .. 0.86
   2 !    7.0   0.1    0.0011       3.3      54      89 ..      85     120 ..      75     134 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0013
      DUF604 57 pltkekGfHqvDlrgdllGlLaahplaplvsl 88
                pl + + + ++Dl g+++G+ a+  lapl+s 
  KKY16424.1 26 PLRETQSIKHIDLSGNTFGVGASEALAPLLSY 57
                5677788999********************95 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0011
      DUF604  54 lGvpltkekGfHqvDlrgdllGlLaahplaplvslH 89 
                 l   l + + +H +Dl ++++Gl +  pl  ++s H
  KKY16424.1  85 LLTALLQCPKLHTIDLSDNAFGLKTKDPLVDFLSKH 120
                 55567788899**********************988 PP

>> Prothymosin  Prothymosin/parathymosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6  23.1   5.6e-06     0.017      47     108 ..     335     400 ..     301     403 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.6e-06
  Prothymosin  47 adeeveeeeeeeeeee....eeeeeeeeegeeeegeeeeeeaegatvkraAedeedddvetkKqkt 108
                  +d ++ + +ee+ e++    e +e e e+ +eee+  eee++e+++v r+A++eed+ v +kK+k 
   KKY16424.1 335 SDRKEGFGKEEHPEDHwgldELDELEGEDSDEEEEGAEEEDDEEEAVLREADEEEDQTVAQKKDKE 400
                  4566666777777777777654555555555555555777778888*****************995 PP

>> Nucleocap_ssRNA  Plant viral coat protein nucleocapsid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.65   1.9e+03      83     109 ..      45      69 ..      37      73 .. 0.78
   2 ?    9.7   0.0   0.00022      0.67      17     109 ..     137     228 ..     129     244 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.65
  Nucleocap_ssRNA  83 vgatpeslmplletnqkieksiairdf 109
                      vga  e+l pll  +q +e si ++d+
       KKY16424.1  45 VGA-SEALAPLLSYQQSLE-SIDLHDI 69 
                      454.699*****9999987.6777775 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00022
  Nucleocap_ssRNA  17 slsqiseelshaptkkfparvflkididnlpsavcsrcklniagnrsvryagfassfqtkqklspavgatpeslmplletnqkieksiairdf 109
                      + + i++ ls    +k  ar + k di +l s vc r +l+     +   a  a s   k       g  pe +  ll    k  ks+ + d+
       KKY16424.1 137 AGTSIADALSLLAERKDEARKVGK-DIPDLESIVCGRNRLENGSMAAWAKAYKAHSRGMKSIKMTQNGIRPEGISHLLTEGLKACKSLEVFDM 228
                      556788999999999999998766.***************999888888999999999999888999*******************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1302  (0.0726198); expected 358.6 (0.02)
Passed bias filter:                      728  (0.0406046); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 2752.60
//
Query:       KKY16425.1  [L=1142]
Description: putative exocyst complex component sec10 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-220  734.8   0.0   1.3e-220  734.6   0.0    1.1  1  Sec10     Exocyst complex component Sec10
     0.0043   16.9   0.1       0.64   10.0   0.0    3.0  2  MarR_2    MarR family
  ------ inclusion threshold ------
       0.16   11.4   0.0        0.3   10.6   0.0    1.4  1  LpxC      UDP-3-O-acyl N-acetylglycosamine deacetylase


Domain annotation for each model (and alignments):
>> Sec10  Exocyst complex component Sec10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  734.6   0.0  2.2e-224  1.3e-220       2     708 ..     397    1136 ..     396    1139 .. 0.96

  Alignments for each domain:
  == domain 1  score: 734.6 bits;  conditional E-value: 2.2e-224
       Sec10    2 qevvdsfnqLddkise.......vgqtavklgeqLesadkqrqraseaaeLiefykeflssgetsklellfkkskdpekklkaAqiarkLlaiskel 91  
                  +++v+sf++Ld+++++        g++av++g+qLe++d+qr+ra++a +Lie+++e++++ge+s le+l ++s++ e+k+++A+iar+L +is++l
  KKY16425.1  397 NQTVESFHKLDTSLKSsptgerwGGNMAVETGRQLEELDRQRRRALDARFLIECWDEVSNKGEVSLLENL-RRSGGGEGKVRSAHIARQLKRISQRL 492 
                  799*******************************************************************.************************** PP

       Sec10   92 d.....................elekaentrekiekyaerlEkelLkeFdkayrkedfermkeiAkvLqefnggasvvqlfvnqhdffidkdkl..d 165 
                  d                       + ++ntre iek++e+lEk+lLk Fd++yr+++f++m+++A+vLqefnggas++ lfvnqh+ffid+++l  +
  KKY16425.1  493 DpqswgqvngiskytngitngvVGATHRNTREIIEKFSETLEKDLLKSFDDFYRRANFDGMRDCATVLQEFNGGASAIGLFVNQHQFFIDRSQLisE 589 
                  ********************9999999*******************************************************************977 PP

       Sec10  166 eangiesseiwekladpdeapskveeslqalfseiretvkeeaeiikrVFpnpekVmqtFlqrvfaqviqqrlealLdkassisqlayLraLhslys 262 
                  e+ g  + e+we ladpd++p+ +e+slq+l++e+r++v+ e+ iik++Fp +e+V+++Flqrvf+q+iqqrle++Ldkas+is+la+Lr+L++++s
  KKY16425.1  590 EVGG--DAETWERLADPDAEPPGIEPSLQSLIDEVRVVVQDESLIIKKAFPFYEEVLTKFLQRVFQQSIQQRLEMVLDKASTISSLAFLRTLQASRS 684 
                  7777..569**************************************************************************************** PP

       Sec10  263 stlkLvkdLkeylsteeidgssa.lsalLdqsveelFvpylegdsYlerEkksLeelyaellskFttlheqsasakslknkvkkklatsfkasls.. 356 
                  +++ Lv+dLk+++ te++d+ s   +  Ldq++ +lFvpy+ g+ Y++rEkk+Leely++l++kF+  ++            +kk+ t+f+a+l   
  KKY16425.1  685 YISGLVDDLKAHGLTEHPDNISPaVAGVLDQQLDDLFVPYFIGSAYIDREKKNLEELYRSLMFKFEIHQS-----------RRKKVPTTFMATLAks 770 
                  **********************99******************************************5444...........49***********988 PP

       Sec10  357 asklaassktkqinraasstlskskkr.....aelketaatsakaaknedeleeedsllslevaesllkwaaeslgRaveLsspsevpkaveallel 448 
                  +s+l as++++++nr++ss++++++++     a     ++++ +a+k e+e++eed+ lsl   +++lkw ae +gR ++Ls ++e+pk+v all++
  KKY16425.1  771 GSDLLASARDAYMNRLESSDITPTQRKmlmkvA----GIKEADSAQKPEIEMTEEDGRLSLPFTKRMLKWLAEGVGRGLDLSGGNETPKDVAALLNM 863 
                  9999***********************743332....45555567899************************************************* PP

       Sec10  449 LlsalgkeYvetaLdaalaaltaqeiaektevpdlsflevvrsvdliisllqvyiktillpllsdspdirremvkeknsflsrlEekvnaglqktid 545 
                  Ll+ +g +Y+e aLdaa +++  +e ++kte pdl +l  vr++   ++l+ ++i+t+l pl+ +s +irrem k kn ++sr+E+++n + q+t+d
  KKY16425.1  864 LLENMGTNYIELALDAACDQALVAE-QAKTE-PDLTYLPQVRTAIGALHLMTSCIDTVLTPLAASSLTIRREMEKNKNIAVSRMEDRINILEQRTVD 958 
                  ***************6666655555.47777.***************************************************************** PP

       Sec10  546 vvvgeveyllskqkknDFrpknddla..merqpTeaCkeivefLssvhsalkeslsgsnlesflteiGlrlhklLleHlkkftvsseGGlmltkDln 640 
                  +v +  ++lls+q++nDFrp++d  +  + + +T++C ++++fL++ +++++ + +g+nl++fltei++ ++++LleH+kkf+v+++G++++t+D++
  KKY16425.1  959 AVLNYTSRLLSNQRRNDFRPRDDAMDatLGQLQTPTCLSVSTFLARFYDSASLAFDGHNLTVFLTEIAIGIRTQLLEHFKKFQVNPTGAFVVTQDMT 1055
                  ********************999888888889***************************************************************** PP

       Sec10  641 eYqdavksf.kipelsekFelLrelgnlfiVqpevlkslvregal............akldrelireyiqrReDykkekld 708 
                  +Y+++++s+   p+ s  +e+L e+gnlf + pe+l++++r+g              a++ +e +r+y+ +ReD+ ++ ++
  KKY16425.1 1056 KYTELLRSWpLEPTFSSSLEILLEIGNLFAIGPEALRERLRGGVAvsksgagvagalAGVGKESLRPYVIKREDAGSVGIQ 1136
                  *********65689******************************9*****************************9877665 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.012        74       7      32 ..     459     486 ..     458     491 .. 0.91
   2 !   10.0   0.0   0.00011      0.64      29      52 ..     677     700 ..     668     704 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.012
                 HHHHHHHHHCTTTS..EEEHHHHHHHHT CS
      MarR_2   7 qarvLaaLgrrpgr..dltvgelarrlg 32 
                 +  +L +L+r++g+  +++ + +ar l+
  KKY16425.1 459 EVSLLENLRRSGGGegKVRSAHIARQLK 486
                 6789************99*******985 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00011
                 HHHTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2  29 rrlglsksavsrilkrLvaaGLve 52 
                 r+l+ s+s++s ++++L a+GL e
  KKY16425.1 677 RTLQASRSYISGLVDDLKAHGLTE 700
                 89*******************976 PP

>> LpxC  UDP-3-O-acyl N-acetylglycosamine deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.9e-05       0.3     198     265 ..     325     392 ..     303     398 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.9e-05
                 TSSTT-STTTSEEEESSSBSSTT--SSTTHHHHHHHHHHHHHHGGGSSEEEEEEEEES--HHHHHHHH CS
        LpxC 198 glakGgsldnavvideekvlneeglrfedEfvrHKiLDliGDLallgapllghvvaykagHalnnkll 265
                  l +G++ +n   + +++ +++++l  + E ++ ++ Dl GDL l  + l ++v   +a H+ n++ l
  KKY16425.1 325 SLTEGATPSNRRSLPQNQAFDPKPLIRAFEQAQRRLNDLSGDLELRENELSAAVRRAEAQHSANTETL 392
                 46778888888889999999*******************************************99754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.86u 0.35s 00:00:01.21 Elapsed: 00:00:00.53
# Mc/sec: 6526.68
//
Query:       KKY16426.1  [L=261]
Description: hypothetical protein UCRPC4_g05935 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.50
# Mc/sec: 1559.00
//
Query:       KKY16427.1  [L=1142]
Description: putative cytoskeleton assembly control protein sla1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-34  117.1   0.0    3.5e-34  116.4   0.0    1.3  1  SHD1      SLA1 homology domain 1, SHD1
    1.3e-33  114.4   7.1      4e-13   48.8   0.1    4.3  4  SH3_1     SH3 domain
    9.8e-27   92.6  10.7      2e-11   43.6   0.3    3.9  4  SH3_9     Variant SH3 domain
    5.7e-19   67.5   0.5      4e-06   26.4   0.0    4.5  4  SH3_2     Variant SH3 domain
    5.7e-11   42.7 139.3    4.5e-08   33.4  47.7    7.8  6  DUF1720   Domain of unknown function (DUF1720)
    0.00055   20.0   0.2      0.059   13.4   0.0    3.2  3  SH3_10    SH3 domain
  ------ inclusion threshold ------
       0.04   13.9   0.0      0.081   12.9   0.0    1.4  1  SAM_4     SAM domain (Sterile alpha motif)
      0.072   13.4   5.9       0.17   12.2   0.6    2.8  3  SH3_3     Bacterial SH3 domain


Domain annotation for each model (and alignments):
>> SHD1  SLA1 homology domain 1, SHD1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   0.0   1.6e-37   3.5e-34       2      65 ..     489     552 ..     488     554 .. 0.96

  Alignments for each domain:
  == domain 1  score: 116.4 bits;  conditional E-value: 1.6e-37
        SHD1   2 kskPdpakvRtWtDrtgsFkVeAeflglkdgkirLhkvnGvkiaVpvekmskeDleyvekvtgk 65 
                 k+kPdp+k+RtWtDr+++FkVeA+f+g++dgki+LhkvnGvkiaVp++kms+eD+eyve+ tg 
  KKY16427.1 489 KPKPDPTKTRTWTDRSNTFKVEAQFIGISDGKIHLHKVNGVKIAVPIAKMSTEDIEYVEERTGA 552
                 89**********************************************************9986 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.3     3e-14   6.7e-11       2      40 ..       9      48 ..       8      61 .. 0.87
   2 !   23.3   0.1   1.6e-08   3.5e-05       1      48 []      74     119 ..      74     119 .. 0.96
   3 !   48.8   0.1   1.8e-16     4e-13       3      48 .]     375     420 ..     374     420 .. 0.99
   4 ?    1.5   0.0       0.1   2.3e+02      13      29 ..     628     644 ..     622     647 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 3e-14
                ESSSBEXSSTTBXEBSTTEEEEEEEECSS.SEEEEEETTS CS
       SH3_1  2 AlYDYeaeesdELsfkkGDviivleksed.gWwkgrlkgt 40
                A+YDY++++++EL +k+G+ + +l+k+ + gWwk++ + +
  KKY16427.1  9 AIYDYQPQSEGELEIKEGELLYILDKTGEdGWWKAKKRAS 48
                9**********************************99876 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 1.6e-08
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 +AlYDY  ++++E+sf ++  + v + s+ +W  + ++    +G+ Ps
  KKY16427.1  74 KALYDYSRQTDEEVSFPEDTNLDVYDTSDPDWTLVGVNE--DFGFAPS 119
                 7*************************************6..69*9997 PP

  == domain 3  score: 48.8 bits;  conditional E-value: 1.8e-16
                 SSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   3 lYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 lY+++a+ +dE++   GD++++l++++++Ww +r+  +gkeG +Ps
  KKY16427.1 375 LYEFMAQGDDEVTVAVGDEVFILDDKNEEWWLVRRLKNGKEGVVPS 420
                 8********************************************8 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.1
                 BXEBSTTEEEEEEEECS CS
       SH3_1  13 ELsfkkGDviivlekse 29 
                  L +k+GD++ v +  +
  KKY16427.1 628 TLGLKEGDILRVMKYLD 644
                 589*********98766 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.3   8.7e-15     2e-11       1      49 []       9      65 ..       9      65 .. 0.90
   2 !   15.6   0.4   4.7e-06     0.011       1      49 []      75     123 ..      75     123 .. 0.98
   3 !   38.5   0.2   3.3e-13   7.4e-10       2      49 .]     375     424 ..     375     424 .. 0.96
   4 ?   -2.8   0.0       2.6   5.9e+03      13      24 ..     629     640 ..     628     646 .. 0.84

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 8.7e-15
       SH3_9  1 AlypyepreddeLsLqrGDvitviees.edgWlegs.....l..tGrtGlvPanyve 49
                A+y+y+p+++ eL++ +G+ +++++++ edgW+ ++        ++  Gl P+nyve
  KKY16427.1  9 AIYDYQPQSEGELEIKEGELLYILDKTgEDGWWKAKkrasdDeeEEPVGLIPENYVE 65
                89**********************99769******87776525688**********7 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 4.7e-06
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegsltGrtGlvPanyve 49 
                 Aly+y  + d+e s++++  + v + s+++W ++  ++  G+ P+ny+e
  KKY16427.1  75 ALYDYSRQTDEEVSFPEDTNLDVYDTSDPDWTLVGVNEDFGFAPSNYIE 123
                 8*****99999************************************97 PP

  == domain 3  score: 38.5 bits;  conditional E-value: 3.3e-13
       SH3_9   2 lypyepreddeLsLqrGDvitvieesedgWlegsl..tGrtGlvPanyve 49 
                 ly + ++ dde  + +GD ++++++ ++ W+++++  +G+ G+vP++yve
  KKY16427.1 375 LYEFMAQGDDEVTVAVGDEVFILDDKNEEWWLVRRlkNGKEGVVPSSYVE 424
                 799********************999********668************7 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 2.6
       SH3_9  13 LsLqrGDvitvi 24 
                 L L +GD+++v+
  KKY16427.1 629 LGLKEGDILRVM 640
                 6699*****997 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.8e-09     4e-06       4      55 ..       9      65 ..       6      67 .. 0.81
   2 !    6.1   0.0    0.0039       8.9       3      56 ..      74     124 ..      73     125 .. 0.90
   3 !   22.9   0.1   2.2e-08   4.9e-05      15      56 ..     385     425 ..     372     426 .. 0.87
   4 !    6.9   0.0    0.0022       4.9      15      49 ..     620     677 ..     603     679 .. 0.66

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.8e-09
                ESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEEC.......CCEEEEEGCGEE CS
       SH3_2  4 aiedyvgedkseLsfkkGdvikvlslgskdsdgwwegevg.......GrvGlfPsslve 55
                ai dy +++++eL++k+G+++++l   +++ dgww++ ++         vGl+P ++ve
  KKY16427.1  9 AIYDYQPQSEGELEIKEGELLYIL--DKTGEDGWWKAKKRasddeeeEPVGLIPENYVE 65
                788*********************..45577799***9964445444444********8 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0039
                 EESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEECCCEEEEEGCGEEE CS
       SH3_2   3 raiedyvgedkseLsfkkGdvikvlslgskdsdgwwegevgGrvGlfPsslvee 56 
                 +a+ dy ++  +e sf ++  + v+   ++++++w ++ v+   G++Ps++ e+
  KKY16427.1  74 KALYDYSRQTDEEVSFPEDTNLDVY---DTSDPDWTLVGVNEDFGFAPSNYIEI 124
                 788899999999999999999****...*******888888*********9875 PP

  == domain 3  score: 22.9 bits;  conditional E-value: 2.2e-08
                 B--B-TTEEEEEE..EEEECTTEEEEEE..CCCEEEEEGCGEEE CS
       SH3_2  15 eLsfkkGdvikvlslgskdsdgwwegev..gGrvGlfPsslvee 56 
                 e +  +Gd + +l   + ++++ww++++  +G+ G++Pss+ve+
  KKY16427.1 385 EVTVAVGDEVFIL---DDKNEEWWLVRRlkNGKEGVVPSSYVEV 425
                 5567789999999...9*********999*************97 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0022
                 B........--B-TTEEEEEE............EEEECT.....TEEEEEECCCEEEE CS
       SH3_2  15 e........LsfkkGdvikvls..........lgskdsd.....gwwegevgGrvGlf 49 
                          L +k+Gd+++v             +sk ++     ++  gev+G  Glf
  KKY16427.1 620 DitpetlrtLGLKEGDILRVMKyldnkygrtgTSSKLRNvsfaeDGADGEVNGSGGLF 677
                 044444555************8888885555433333336666677777777777776 PP

>> DUF1720  Domain of unknown function (DUF1720)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   5.8       3.3   7.4e+03      38      60 ..     753     773 ..     705     801 .. 0.51
   2 ?    0.1  35.7       0.5   1.1e+03      15      71 ..     803     869 ..     792     872 .. 0.56
   3 ?  -28.6  73.6         8   1.8e+04      12      72 ..     891     980 ..     854     995 .. 0.77
   4 !   17.0  44.4   2.6e-06    0.0058       2      72 ..     973    1048 ..     971    1048 .. 0.81
   5 !   33.4  47.7     2e-11   4.5e-08       1      74 [.    1029    1106 ..    1029    1107 .. 0.93
   6 !   22.8  31.3     4e-08     9e-05       1      74 [.    1049    1126 ..    1049    1127 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.3
     DUF1720  38 glqpqpTG.ggqfapglqpqqTGf 60 
                  l+pqpT  +  ++p   p  T++
  KKY16427.1 753 ALAPQPTPaKAASPP---PATTAP 773
                 445555532222222...222222 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.5
     DUF1720  15 qpqqqqplqpqpTGfmpqqqtgqglqpqpTG.ggqfapglqpqqTGf..........qeqaqqglqPq 71 
                 qpq  +p  pqp   ++ q++ q+ qpqpTG ++ f ++l+pqqTG+          ++q++++  Pq
  KKY16427.1 803 QPQA-PPTIPQPVHNLATQPPAQPQQPQPTGaNPAFFSQLNPQQTGLpqnigqssgmPQQMPPRQRPQ 869
                 2222.355555555555555556777777777776666777777777755554444355555555555 PP

  == domain 3  score: -28.6 bits;  conditional E-value: 8
     DUF1720  12 qqqqpqqq...qplqpqpTGfmpqqqtgq.....................glqpqpTG.ggqfap......glqpqqTGfqeqaqqglqPqa 72 
                 q++q+q+q   +plqpq TG+  + + ++                     +lq+q+TG ++q ++      g+++qqTGf   +q+g+q+q+
  KKY16427.1 891 QNFQQQNQfgpPPLQPQLTGIPHNAPLQAppgqsmndltqqrfqqqygqpQLQSQQTGfPQQGQGfapfqnGIMSQQTGF--GQQPGFQQQQ 980
                 44444444444477888888877777666777778888888888888888999999996666666888999999999999..7777777775 PP

  == domain 4  score: 17.0 bits;  conditional E-value: 2.6e-06
     DUF1720    2 qp..qqtGfqppqqqqpqqq......qplqpqpTGfmpqqqtgqglqpqpTG.ggqfapglqpqqTGfqeqaqqglqPqa 72  
                  qp  qq+ f++ +qq+ +        +pl +q+TGf+++qq+    qp++TG ++ ++p lqpqqTGf +++q+g+qPq+
  KKY16427.1  973 QPgfQQQQFMSGNQQGSPFAdpqrsfSPLGAQQTGFGGFQQQ----QPMQTGiNSVLPPALQPQQTGFTQSQQTGFQPQQ 1048
                  444444555555555444448999****************98....9*****9999999*******************96 PP

  == domain 5  score: 33.4 bits;  conditional E-value: 2e-11
     DUF1720    1 lqpqqtGfqppqqqqpqqqqplqpqpTGfmpqqqtgqglqpqpTG.ggqfap............glqpqqTGfqeqaqqglqPqaTG 74  
                  lqpqqtGf + qq+++q+q +lqpq+TGf+pqqq    +qpq+TG +g+  +            +l p++TG      ++lqPq+TG
  KKY16427.1 1029 LQPQQTGFTQSQQTGFQPQ-QLQPQQTGFQPQQQ---HFQPQATGlNGFGGQnqsfsqppppvpPLPPMPTGI-----TPLQPQKTG 1106
                  6******************.***********999...79*****87776666777999***************.....********9 PP

  == domain 6  score: 22.8 bits;  conditional E-value: 4e-08
     DUF1720    1 lqpqqtGfqppqqqqpqqq...qplqpqpTGfmpqqqtgqglqpqpTGggqfapglqpqqTGf.....qeqaqqglqPqaTG 74  
                  lqpqqtGfqp+qq  ++q    +++  q+  f +++++  +l p+pTG   ++p lqpq+TG       +++q++l  q+TG
  KKY16427.1 1049 LQPQQTGFQPQQQHFQPQAtglNGFGGQNQSFSQPPPPVPPLPPMPTG---ITP-LQPQKTGAppvrfGVSEQKKLVAQPTG 1126
                  6999999999998876666677777777777777777777********...998.********99999999**********9 PP

>> SH3_10  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.59   1.3e+03      18      45 ..      10      40 ..       7      47 .. 0.80
   2 ?    2.1   0.0     0.094   2.1e+02      14      52 ..      72     112 ..      64     124 .. 0.77
   3 !   13.4   0.0   2.6e-05     0.059      23      59 ..     383     420 ..     369     425 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.59
      SH3_10 18 Lcdykqa...evsiekgeevtLldnsdrekW 45
                + dy+ +   e +i++ge + +ld + +  W
  KKY16427.1 10 IYDYQPQsegELEIKEGELLYILDKTGEDGW 40
                5566555555899***********9999888 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.094
      SH3_10  14 aveALcdykqa...evsiekgeevtLldnsdrekWkVqtssG 52 
                 +++AL dy  +   evs+ ++ ++ + d sd+  W++   + 
  KKY16427.1  72 SAKALYDYSRQtdeEVSFPEDTNLDVYDTSDPD-WTLVGVNE 112
                 468888887555559****************97.98876655 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 2.6e-05
      SH3_10  23 qaevsiekgeevtLldnsdrekWkVqtss.GaemtvPg 59 
                 ++ev++  g+ev +ld  ++e W V++ + G+e  vP+
  KKY16427.1 383 DDEVTVAVGDEVFILDDKNEEWWLVRRLKnGKEGVVPS 420
                 679************************988*******9 PP

>> SAM_4  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.6e-05     0.081      10      69 ..     586     644 ..     583     652 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.6e-05
       SAM_4  10 ewiqffkeagipaglavnyavsfvdnriqknmlldlskeimnelgitvvgdiiailkhak 69 
                 +w +ff +ag+ +     y+  f  + ++ ++l d++ e +  lg+   gdi+ ++k+  
  KKY16427.1 586 DWFDFFLKAGVGPYQCERYSQNFNRDSMDESILPDITPETLRTLGLK-EGDILRVMKYLD 644
                 7********************************************97.5****9999865 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2      0.05   1.1e+02      19      45 ..      23      51 ..      22      65 .. 0.74
   2 ?   -2.8   0.0       3.8   8.4e+03      27      54 ..      97     122 ..      89     123 .. 0.63
   3 ?   12.2   0.6   7.8e-05      0.17      18      55 .]     387     424 ..     381     424 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.05
       SH3_3 19 lpyGekVevleetgggeWykv..rtddgt 45
                ++ Ge + +l++tg+++W+k   r +d++
  KKY16427.1 23 IKEGELLYILDKTGEDGWWKAkkRASDDE 51
                67899999************976555555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.8
       SH3_3  27 vleetgggeWykvrtddgteGwvssgyl 54 
                 v + ++  +W  v  + +  G++ s y+
  KKY16427.1  97 VYDTSDP-DWTLVGVNEDF-GFAPSNYI 122
                 4443443.3*999656666.88888887 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 7.8e-05
       SH3_3  18 tlpyGekVevleetgggeWykv.rtddgteGwvssgyls 55 
                 t+  G++V +l++ +++ W+ v r  +g+eG v s+y++
  KKY16427.1 387 TVAVGDEVFILDDKNEE-WWLVrRLKNGKEGVVPSSYVE 424
                 7899************9.****9999999**99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.52
# Mc/sec: 6655.75
//
Query:       KKY16428.1  [L=469]
Description: putative protein os-9 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-20   71.6   1.3    1.6e-19   70.7   0.1    2.1  2  PRKCSH    Glucosidase II beta subunit-like protein
  ------ inclusion threshold ------
      0.015   15.0   0.0      0.095   12.4   0.1    2.0  2  PRKCSH_1  Glucosidase II beta subunit-like protein


Domain annotation for each model (and alignments):
>> PRKCSH  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.1   1.7e-23   1.6e-19       1      81 []     152     243 ..     152     243 .. 0.98
   2 ?   -2.0   0.1      0.84   7.5e+03      58      78 ..     449     469 .]     429     469 .] 0.61

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 1.7e-23
                 X-EEEEEETTEEEEEETTTEEEEE-E...........ETTEE-S--EEEEEE..EEEEEEE-------.....---S--EEEEEEEEE-SB- CS
      PRKCSH   1 gkCvsskegwwtYelCygkkvrQfhe...........pekekgksevvLGrfnkeehsewaekneaksystedeekqsnryislkyenGtkC 81 
                 gkC+++ +gww+Y++Cy+++v+Qfh+           p++++++  ++LGrf+++++ +  e++ ++++  + + k+ +ry+++k+e+Gt+C
  KKY16428.1 152 GKCLYFVSGWWSYSFCYNSQVKQFHQlppgngapiypPQEDPTTPAYILGRFSDKSKARRGESESSRTDIGQLQMKGETRYLVQKLEGGTTC 243
                 69**************************************************9999999999999999************************ PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.84
                 .....---S--EEEEEEEEE- CS
      PRKCSH  58 ystedeekqsnryislkyenG 78 
                   ++++e+ ++  ++ +y+ G
  KKY16428.1 449 APNKKDENRQQEGSEEEYKEG 469
                 455677777777777777766 PP

>> PRKCSH_1  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0     0.092   8.2e+02      28      63 ..     140     174 ..     124     184 .. 0.81
   2 ?   12.4   0.1   1.1e-05     0.095      80     132 ..     236     291 ..     213     307 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.092
                 XXXXX.XX-TTTTT-EEEEEETTEEEEEETTSEEEE CS
    PRKCSH_1  28 seyGldDiyRalegrevkekigdYeYkvvllesvvq 63 
                  + G+ ++++ leg+++   +g + Y +++  +v q
  KKY16428.1 140 VNKGW-ELLQDLEGKCLYFVSGWWSYSFCYNSQVKQ 174
                 45688.799999*****999999***9999999988 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 1.1e-05
                 EEEE-SB-.TTSSC-EEEEEEEE-SS..-EEEEEEEEETTEEEEEEEEGGG--XXX CS
    PRKCSH_1  80 kyekGakC.WnGPvRsaiveveCGde..nelvsvseaekCeYllkvkspaaCsnvl 132
                 k e G+ C   G +R+  v+++C  +  +++  + e   C Yl+++ +p  C++v 
  KKY16428.1 236 KLEGGTTCdLTGANRKVEVQFHCHPQstDRIGFIKEITTCTYLMVIYTPRLCNDVA 291
                 56789999558************87522678899******************7665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3064.93
//
Query:       KKY16429.1  [L=184]
Description: hypothetical protein UCRPC4_g05938 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-21   76.2   2.7      2e-21   76.2   2.7    1.7  2  HSCB_C          HSCB C-terminal oligomerisation domain
    1.7e-08   34.4   0.7    3.5e-08   33.4   0.1    1.8  2  DnaJ            DnaJ domain
     0.0022   18.2   1.4     0.0031   17.7   1.4    1.2  1  SMBP            Small metal-binding protein
  ------ inclusion threshold ------
      0.063   12.7   0.1      0.079   12.4   0.1    1.1  1  BAR_3_WASP_bdg  WASP-binding domain of Sorting nexin protein


Domain annotation for each model (and alignments):
>> HSCB_C  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.75   3.4e+03      45      60 ..      59      73 ..      50      84 .. 0.48
   2 !   76.2   2.7   4.5e-25     2e-21       1      75 [.     100     171 ..     100     172 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.75
                HHHHHHHTT-HHHHHH CS
      HSCB_C 45 eleeafekkdleaaad 60
                +l++ + ++ ++++ d
  KKY16429.1 59 ALSSRI-NTAYKTLSD 73
                223333.223344444 PP

  == domain 2  score: 76.2 bits;  conditional E-value: 4.5e-25
                 T-HHHHHHHHHHHHHHHCGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHH CS
      HSCB_C   1 ldpefLmevMelrEeleeaeeaadkeeleelkaeveerieeleaeleeafekkdleaaadllrrlrYlekikeei 75 
                 +dp+ LmevMe++E++eea  + +++e+e+lk+e+++ri+++++ l +a++  ++e+a++++++lr++ ++++ +
  KKY16429.1 100 QDPDTLMEVMEAQEAIEEA--S-EESEIEALKEENKQRIDDTVKILGAAIDSGNVEEARKECIKLRFWRSLQDGL 171
                 79*****************..3.66*************************888*******************987 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.1   7.8e-12   3.5e-08      13      62 ..      29      80 ..      24      80 .. 0.92
   2 ?   -2.1   0.1         1   4.5e+03      42      46 ..     114     118 ..      98     136 .. 0.54

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 7.8e-12
                -HHHHHHHHHHHHHHHSTTTSCCHH..HHHHHHHHHHHHHHHHTSHHHHHHH CS
        DnaJ 13 sedeIkkaYrklalkyHPDknpkdp..eaeekFkeineAyevLsdpekRkqY 62
                s+ ++++++ +l  +yHPDk p+d+  +ae    +in+Ay++Lsdp  R+qY
  KKY16429.1 29 STPQLRREFLQLQTRYHPDKFPSDQklRAEALSSRINTAYKTLSDPLLRAQY 80
                566899***************88888999999******************99 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1
                 HHHHH CS
        DnaJ  42 kFkei 46 
                 + +e 
  KKY16429.1 114 AIEEA 118
                 33332 PP

>> SMBP  Small metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   1.4     7e-07    0.0031      50      95 ..     108     155 ..      91     158 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 7e-07
                 HHHHHHHHHHHHHH.....-------HHHHHHHHHHHHHHHHHCT-HH CS
        SMBP  50 veHaeealkhakaa..aekakeeekehldegikhLeeAIkhgkaghad 95 
                 v +a+ea+++a ++  +e  kee+k+++d+++k L +AI+ g+ ++a 
  KKY16429.1 108 VMEAQEAIEEASEEseIEALKEENKQRIDDTVKILGAAIDSGNVEEAR 155
                 55799999999999888889999******************9998875 PP

>> BAR_3_WASP_bdg  WASP-binding domain of Sorting nexin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.8e-05     0.079      85     191 ..      37     146 ..      28     162 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.8e-05
  BAR_3_WASP_bdg  85 fkalsqafevdeqvassaL.nealaa.tgktYeeige.vfaeqpkkDleflletleeYkGllanfPDiigvhkgalekvkesdklveegklssee 176
                     f +l++ ++ d+   +++L  eal++   ++Y+++++ ++ +q        +++l+e +G  +  PD++    +a e + e+ + +e + l++e+
      KKY16429.1  37 FLQLQTRYHPDKFPSDQKLrAEALSSrINTAYKTLSDpLLRAQYLLAEFHGIDVLAEDQGSAQQDPDTLMEVMEAQEAIEEASEESEIEALKEEN 131
                     56666677777777777763367764145678888874455555544455579****************9999********************** PP

  BAR_3_WASP_bdg 177 keklkkrvsvisyal 191
                     k+++++ v++++ a+
      KKY16429.1 132 KQRIDDTVKILGAAI 146
                     ***********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1119  (0.0624129); expected 358.6 (0.02)
Passed bias filter:                      668  (0.0372581); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1186.39
//
Query:       KKY16430.1  [L=560]
Description: putative mfs monocarboxylate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-20   71.5  45.9    2.6e-18   66.1  25.0    2.0  2  MFS_1     Major Facilitator Superfamily
     0.0028   17.2   0.0     0.0028   17.2   0.0    2.5  3  DUF3169   Protein of unknown function (DUF3169)
  ------ inclusion threshold ------
        2.1    8.2   9.6        1.7    8.5   2.1    3.4  4  LapA_dom  Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1  25.0   4.3e-22   2.6e-18       4     351 ..      57     424 ..      54     426 .. 0.71
   2 !   19.6  12.8   5.7e-08   0.00034      37     175 ..     319     487 ..     314     513 .. 0.74

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 4.3e-22
       MFS_1   4 aaflsalarsi.lgpalplalaedlgispseigllltlyalga.avaslplGrlsdrfGrrr.vlllglllfalglllll.fasslw.lllvlrvlqGl 97 
                 a+f+ a+  +i l + + +   +dlg+ ++e +  ++++a+g+  v+++++ +l + +  ++ +++ ++ + ++ +++++ f++++  l +   +l Gl
  KKY16430.1  57 AVFCQAFIEGIpLCFGIFENHYQDLGLPGHERSSWIGVCAIGMlYVGAPFINYLCEGLKFKPeCFIQCAWAICVISMVAAsFCTTINtLAITQGFLLGL 155
                 666666666664222222244589999999966666666666659*********996666777777777777777444445889999999999****** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........ 188
                    ++   +++++  wf k +rg+a+gl+ +++ +  +    l+ ++++  g ra+f+ +a+++++      +++++++p ++ +   ee+        
  KKY16430.1 156 SLLIIEMPSLIIVNTWFVK-RRGFAYGLIFSAADIFGAGYGYLAQYVLHRHGMRATFLTFAVLAFVIPG-TSMWFLRPRPCSPSEDASEEStartepln 252
                 ******************9.*******9999888888777888888888*****************944.34788888888888888888555554444 PP

       MFS_1 189 .kgtgpaplvp...........awkallkdpvlwillialllfffgfsglltllply.lqevlgls.glllaglllallalvgailallagrlsdrlgr 273
                  +        +           + +  + +p l+++l++ ++ +f++++ +++lp+y +q v  l  g  +++ ll+++ l  +++ +++g+lsdr+  
  KKY16430.1 253 nN--------EcpestivdeppHSRPAHLRPLLYLFLLGTCIQSFAYYIPSIYLPTYnTQVVASLVdGSNQNTNLLGVFNLSQIPGEFIFGWLSDRTDV 343
                 41........1533333334443444444554446888888889999999999999954444444485566666699999999999**********999 PP

       MFS_1 274 rrrlllallllllaalglallavtssavllllvlvliGfglgfv..fpsllalasdlappeeag.tasglfntagslggal 351
                 ++  +++ l++++a+++l      + ++ l  +++++G+++gf   f +l++ +s  +  + +g ++++  +++++++++ 
  KKY16430.1 344 HFLSTVSSLVASIATFLLWAGLIGDFPASLGTLMAFAGLFGGFGggFLALWSRMSMCFDSKVQGqRVYSMLSMIRGIATFA 424
                 888888888888877777666666444444446666555333333355555555555566667768999999999998875 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 5.7e-08
       MFS_1  37 lltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.......sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsa 128
                 ll+++ l ++ + +++G+lsdr     +  ++ l+ +++ ++ll+a       +sl +l+++  l G ++g+++++   +     +k +  r++++ls+
  KKY16430.1 319 LLGVFNLSQIPGEFIFGWLSDRTDVHFLSTVSSLVASIA-TFLLWAgligdfpASLGTLMAFAGLFGGFGGGFLALWSRMSMCFDSKVQGQRVYSMLSM 416
                 678999***************997777666666666666.3333322334554777755555555555559*********9999999************ PP

       MFS_1 129 gfslGailgpllggllasslg........................Wravfyilaivsllafvlfllllpee 175
                   ++++    +++++l+ ++                         + ++ +++a  +++++++++  ++ e
  KKY16430.1 417 IRGIATFASGPISSALLKLGTklqnqssnpvpqtqtqthrgietrYKVMILFVACCMAVSALIAASGFFIE 487
                 ****************9554488888888888888888888888877777777777777777444444333 PP

>> DUF3169  Protein of unknown function (DUF3169)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.9      0.43   2.6e+03     112     161 ..     130     173 ..     120     176 .. 0.51
   2 ?   -1.5   0.1      0.23   1.4e+03       6      48 ..     179     220 ..     174     229 .. 0.70
   3 !   17.2   0.0   4.7e-07    0.0028       9     133 ..     375     495 ..     371     504 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.43
     DUF3169 112 ilsfllilasyslkiyeeesssklvlifliaivlfliilflkiiiqvriv 161
                 ++s+++++++++ ++         +  fl+++ l +i +   ii+++ +v
  KKY16430.1 130 VISMVAASFCTTINT------LAITQGFLLGLSLLIIEMPSLIIVNTWFV 173
                 333333333333332......22233456777777766666666665554 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.23
     DUF3169   6 kfillmliggliGgiiGfllgafeaekgleelsaalkelllli 48 
                  + l++ ++ ++G+  G+l  ++  ++g++ +++ + ++l ++
  KKY16430.1 179 AYGLIFSAADIFGAGYGYLAQYVLHRHGMR-ATFLTFAVLAFV 220
                 567788888888888899988888888888.666666666554 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 4.7e-07
     DUF3169   9 llmliggliGgiiGfllgafeaekgleelsaalkelllligskilpllli...iavlvviisvvflrkakkllkkwdeeddeeseeeyeqiekklsigl 104
                  lm+++gl+Gg+ G++l++  +        ++  +  +  ++++ +l +i    + ++  is  +l+   kl++++ +   + ++++ + ie ++++++
  KKY16430.1 375 TLMAFAGLFGGFGGGFLALWSRM-------SMCFDSKVQGQRVYSMLSMIrgiATFASGPISSALLKLGTKLQNQSSNPVPQTQTQTHRGIETRYKVMI 466
                 699**************776433.......33344444456667777777773556667799*********************99999*********** PP

     DUF3169 105 ilssvslilsfllilasyslkiyeeesss 133
                 +++ +++ +s l+++ ++  + +e+ +++
  KKY16430.1 467 LFVACCMAVSALIAASGFFIERWEKRQNN 495
                 *************9999998888887766 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2       1.3     8e+03      29      39 ..     149     159 ..     142     162 .. 0.64
   2 ?    8.5   2.1   0.00029       1.7      12      44 ..     366     398 ..     355     410 .. 0.84
   3 ?   -3.0   0.0       1.1   6.7e+03      25      47 ..     421     443 ..     420     445 .. 0.80
   4 ?    2.9   0.0     0.016        98      20      50 ..     466     496 ..     465     498 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.3
    LapA_dom  29 iGallgwllsl 39 
                  G+llg+ l +
  KKY16430.1 149 QGFLLGLSLLI 159
                 47777776655 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00029
    LapA_dom  12 faqvelpLsllllvafgiGallgwllslwsylr 44 
                 ++ + ++L++l+++a ++G + g++l+lws++ 
  KKY16430.1 366 IGDFPASLGTLMAFAGLFGGFGGGFLALWSRMS 398
                 556899***********************9885 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.1
    LapA_dom  25 vafgiGallgwllslwsylrlrr 47 
                 ++f+ G +   ll l ++l++++
  KKY16430.1 421 ATFASGPISSALLKLGTKLQNQS 443
                 68889999999999999998876 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.016
    LapA_dom  20 sllllvafgiGallgwllslwsylrlrrelr 50 
                 +l ++ ++++ al++   +++ ++ +r  +r
  KKY16430.1 466 ILFVACCMAVSALIAASGFFIERWEKRQNNR 496
                 678999**************98887776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3709.01
//
Query:       KKY16431.1  [L=326]
Description: hypothetical protein UCRPC4_g05940 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2141.10
//
Query:       KKY16432.1  [L=815]
Description: putative cyclohexanone monooxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-14   51.9   0.2    1.5e-13   50.0   0.1    2.0  2  FMO-like        Flavin-binding monooxygenase-like
    6.6e-10   39.1   0.0    2.4e-09   37.3   0.0    2.0  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    6.2e-07   28.9   0.0    1.4e-05   24.5   0.0    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    8.6e-06   25.2   0.1    0.00022   20.6   0.5    2.7  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    1.9e-05   24.4   0.0     0.0043   16.7   0.0    2.4  2  DAO             FAD dependent oxidoreductase
      2e-05   23.9   0.0    0.00047   19.4   0.0    2.4  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
  ------ inclusion threshold ------
      0.011   15.7   0.0       0.76    9.8   0.0    3.3  3  NAD_binding_9   FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.1   5.8e-17   1.5e-13       3     219 ..      33     239 ..      31     250 .. 0.83
   2 ?   -2.6   0.0      0.54   1.4e+03     302     334 ..     352     383 ..     347     394 .. 0.74

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 5.8e-17
    FMO-like   3 kvaviGaGvsG.lasikccle.egleptcfersddiGGlwrfkenveeGrasiyksvvsnsskemscfsdf.plpedypnflhnsklleylklfakefd 98 
                 kvaviG+G+sG la i   l+  g++   fe+ +d+GG w   en       +y  v  ++   +   s f p  e    f +  ++ +y ++ ak+ d
  KKY16432.1  33 KVAVIGGGLSGiLAGIMLPLKvPGIQLKIFEKNKDLGGTWV--EN-------VYPGVRCDVPAHVYQ-STFdPNTEWSEMFAEGTEIRDYWQKVAKKHD 121
                 8**********5678999987369****************4..44.......444444444443332.33315555556688999************** PP

    FMO-like  99 llkyiqfkttvcsvkkrpdfstsGqwevvtekegkkesavfdavmvctGhhvnphlplesfpGiekfkGqyfhsrdykepevfkgkrvlviGlGnsggd 197
                 + +y  f  +++  + + + s     +vv   +g+ + + fd ++   G +   +lp   +pG++++ G++ h+ ++      +gk v viG G sg +
  KKY16432.1 122 VYRYADFGKKITRAEFNENTS-KWDLDVVNVDNGQVHEEEFDFIVAALGRFNAWKLP--NYPGLDEYEGHLRHASNWDPSFDATGKSVAVIGNGASGIQ 217
                 *******99887665544433.345579***********************999999..59****************999999**************** PP

    FMO-like 198 iavelsrtaeqvllstrsGswv 219
                 +  +l r  +++   +rs +w+
  KKY16432.1 218 VVPNLQRIVKHLDHYARSPTWI 239
                 **********999999999998 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.54
    FMO-like 302 vkeltetsaifedgtveedidvvifatGytfaf 334
                 +k++t + +  edgt e ++d++i +tG   +f
  KKY16432.1 352 IKRFTMKGIETEDGT-ERPVDAIICCTGANTDF 383
                 677777777777776.67899999999877665 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   9.4e-13   2.4e-09       1      67 [.      36     105 ..      36     105 .. 0.93

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 9.4e-13
                    EE--SHHHHHHHHHHHCC..TEEEEEE-SSSSSSGGG-EECETTCEECTS---E.EETTHHHHCHHHHCC CS
  NAD_binding_8   1 IvGaGlsGlvaAylLaka..gfdvlllekrdrlGGraasyevpgvrvdygahif.hgsgyypnvrrllre 67 
                    ++G+GlsG +a   L  +  g++  ++ek+ +lGG +  + +pgvr+d++ah++  +++++++++++++e
     KKY16432.1  36 VIGGGLSGILAGIMLPLKvpGIQLKIFEKNKDLGGTWVENVYPGVRCDVPAHVYqSTFDPNTEWSEMFAE 105
                    8*************988778**********************************6667999999999975 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   5.6e-09   1.4e-05       2     161 ..      33     222 ..      32     237 .. 0.70
   2 ?    2.1   0.0     0.037        94     215     239 ..     356     381 ..     335     401 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 5.6e-09
                  SEEEE--SHHHHHHHHHHHH..HTS-EEEEE.........TTHCHHHCSHHHHCHHHHHHHHHHHHH.......HHHHCHHHHCCCCHCCTCEEEE.E CS
                  xxxxxxxxxxxxxxxxxxxx..xxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxx.x RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq..agakvtlve.........legtclnggcllskallgvaedaeias.......evvkklnqgielllgeevvkid.p 80 
                  +v+viGgG  G+ a + l     g++  ++e          e+  ++++c ++  + ++  d++++         +++ + q++ + ++  v ++  +
   KKY16432.1  33 KVAVIGGGLSGILAGIMLPLkvPGIQLKIFEknkdlggtwVENVYPGVRCDVPAHVYQSTFDPNTEWsemfaegTEIRDYWQKVAKKHD--VYRYAdF 128
                  79************999988445999999976677777888888888888776666666666665557888887444444444444444..3332213 PP

                  SCEEEEETEEEC..............TCEEEEEESEEEE---.E.EE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHH CS
                  xxxxxxxxxxxx..............xxxxxxxxxxxxxxxx.x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  81 gkkkvklekkke..............gdeekiaydklvlAtG.s.sprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaal 161
                  gk k++  + +e              g+ ++ ++d +v A G +   ++++ pG+ e+ g+l r+  + ++  ++   k+++v+G+G+ G+ +   l
   KKY16432.1 129 GK-KITRAEFNEntskwdldvvnvdnGQVHEEEFDFIVAALGrFnAWKLPNYPGLDEYEGHL-RHASNWDPSFDATG-KSVAVIGNGASGIQVVPNL 222
                  33.444433333566667777777777778889*********65455666*****9999999.66666666655555.6***********9876555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.037
                  EEE.EEETTSCEEEESEEEE-S-EEE CS
                  xxx.xxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 215 kle.vvledgeeidadlvvvavGvrp 239
                   ++  ++edg+e ++d ++ ++G   
   KKY16432.1 356 TMKgIETEDGTERPVDAIICCTGANT 381
                  33356888888888888888888654 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.5   8.7e-08   0.00022      69     223 ..      95     265 ..      35     277 .. 0.71
   2 ?   -0.1   0.0      0.17   4.4e+02     203     273 ..     312     385 ..     298     405 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 8.7e-08
  Pyr_redox_3  69 pafslkeeklsrkealeYlrevaksfelp..iklfeeVesvkkedeg.....fevetsketye...AkkviiAtGefdkPnklnipGeeklvkhyskv 156
                  p+   +e  +++ e+ +Y ++vak++++       +++++ + ++++      +v+ ++++++    ++++ A G+f+  +++n+pG +++  h ++ 
   KKY16432.1  95 PNTEWSEMFAEGTEIRDYWQKVAKKHDVYryADFGKKITRAEFNENTskwdlDVVNVDNGQVHeeeFDFIVAALGRFNAWKLPNYPGLDEYEGHLRHA 192
                  555566666777777777777777776632234445666555543221111145677776655111467999*****************999999999 PP

  Pyr_redox_3 157 kefhkya...gqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekee...sdpsyslkpdienrleelvk 223
                  +++++ +   g+ v+ViG + S++ +  +l r  ++   + r+ ++ + +   ++  y+ +p+ +++le+  +
   KKY16432.1 193 SNWDPSFdatGKSVAVIGNGASGIQVVPNLQRIVKHLDHYARSPTWIALSwggDERTYEAQPYSKEELESFKD 265
                  9998765333899*******************************99874333478899999999999998755 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.17
  Pyr_redox_3 203 esdpsyslkpdienrleelvke.ekikvlfnaevkeikekeeeykvk...tedgkkvevkddvvlatGykpdlsf 273
                  + +   +l pd  ++ ++l    + +++l + +v+ i+++ +++++k   tedg++  v d ++ +tG + d+ +
   KKY16432.1 312 KPELINKLIPDFAPNCRRLTPGpGYLEALCEPNVEYITDPIKRFTMKgieTEDGTERPV-DAIICCTGANTDFAP 385
                  44556677777777777776667778889999999999998888766554888888665.777888**9999865 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0046        12       1      39 [.      33      74 ..      33     185 .. 0.77
   2 !   16.7   0.0   1.7e-06    0.0043     152     311 ..     336     500 ..     258     527 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0046
                EEEEECTSHHHHHHHHHHHHT..T..EEEEESSSSTTSSGGGS CS
         DAO  1 dvviiGGGiiGlstAyeLarr..g..VtllekgdiagsgaSgr 39
                +v++iGGG  G+ +   L  +  g    ++ek++++g g+   
  KKY16432.1 33 KVAVIGGGLSGILAGIMLPLKvpGiqLKIFEKNKDLG-GTWVE 74
                59*************9997666559999999999999.76544 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.7e-06
                 HHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEEEEEECCT.HSTGSGCSEEEEEEEE CS
         DAO 152 laraaealGveilegtevtgleeedgkvwgverttp.gendaadavVnaaGawsdllgllkeldlpispvrgqvlvlkplse.klvspaailpvpetdd 248
                 +++a+ +  ve ++  +++++       +g+  +t+ g+++ +da++ ++Ga +d++   +++  pi+  rg+ l  + ++e +  +p           
  KKY16432.1 336 YLEALCEPNVEYITD-PIKRF-----TMKGI--ETEdGTERPVDAIICCTGANTDFA---PTF--PIVS-RGHDLKSAWTPEgEYGFP----------Y 410
                 666666666888888.88888.....26788..6666999899************99...888..8555.888888833333112222..........2 PP

                 TTTTEEEEEETTSEEEEEESSE.........................EETTCSSTSCSHHHHHHHHHHHHHHSGG..GCGEEEEEE.EEEE CS
         DAO 249 dgrgvyvtprkdgrvlvGgtad.........................eesgdddpevdeedidellealrklfPq..lgdvlrkwa.Glrp 311
                    g+ + p+  + ++vGg +                             g  + +++ +++d++ ++  ++fP+  l d  ++wa G rp
  KKY16432.1 411 TYLGMAA-PDYPNFFVVGGPHGtgaagsiphnvetqitylakvlrkiSSQGIKTITPSKKAVDDFVKYSDAFFPTtvLTDNCSSWAnGGRP 500
                 2333222.23335555544333355566666888888888888876655556668999999999999999999997667777899988888 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.049   1.2e+02     188     204 ..      28      44 ..       6      68 .. 0.78
   2 !   19.4   0.0   1.8e-07   0.00047      96     218 ..     107     228 ..      92     244 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.049
  K_oxygenase 188 llakkriaVvGsGqSaa 204
                  + ++ ++aV+G+G S+ 
   KKY16432.1  28 EVRPLKVAVIGGGLSGI 44 
                  567789*********84 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 1.8e-07
  K_oxygenase  96 kefedYlrWvasqle..eqvrfgeeveevepdeeeeeelltveskdaegeeeelearnlvlgvG..tepkiPevleklegkervvHsseylerkeell 189
                  +e  dY + va++ +      fg+++++ e++e++++  l+v +  ++g+ +e e   +v + G  +  k+P+     e + ++ H+s+   +   ++
   KKY16432.1 107 TEIRDYWQKVAKKHDvyRYADFGKKITRAEFNENTSKWDLDVVN-VDNGQVHEEEFDFIVAALGrfNAWKLPNYPGLDEYEGHLRHASNWDPSF--DA 201
                  67899******99885456899***********99886666665.37899999999999999997677899*9866666668*********999..89 PP

  K_oxygenase 190 akkriaVvGsGqSaaeifedllrrqkkve 218
                  ++k++aV+G G S+ +++ +l r  k  +
   KKY16432.1 202 TGKSVAVIGNGASGIQVVPNLQRIVK--H 228
                  ******************99988766..3 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0003      0.76       1      74 [.      35     114 ..      35     143 .. 0.75
   2 ?    1.0   0.0      0.14   3.6e+02       1      18 [.     207     224 ..     207     239 .. 0.85
   3 ?   -0.4   0.0      0.39     1e+03     136     155 ..     360     379 ..     344     380 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0003
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtdqseelllNvpasemslftddp..........ptfaeWlr 74 
                    a++G+G +G+++   L  +      +++++f++++   g+ w ++  + ++  vpa+  +   d +          ++ +++++
     KKY16432.1  35 AVIGGGLSGILAGIMLPLKV---PGIQLKIFEKNKDL-GGTWVENVYPGVRCDVPAHVYQSTFDPNtewsemfaegTEIRDYWQ 114
                    89**************9995...99********9998.8999999999999999987665444433445555555544555554 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.14
  NAD_binding_9   1 aivGaGprGlavlerLla 18 
                    a++G G++G+ v+ +L +
     KKY16432.1 207 AVIGNGASGIQVVPNLQR 224
                    89**********988765 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.39
  NAD_binding_9 136 vlladgaslaadaVvLAlGh 155
                    + ++dg++  +da++ ++G 
     KKY16432.1 360 IETEDGTERPVDAIICCTGA 379
                    7899**************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 5072.92
//
Query:       KKY16433.1  [L=1303]
Description: putative transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-76  255.9   3.0    1.9e-75  254.3   1.0    2.7  3  Sin3a_C         C-terminal domain of Sin3a protein
      2e-43  146.2  11.9    1.7e-17   63.2   0.0    4.2  4  PAH             Paired amphipathic helix repeat
    3.6e-38  129.6   0.3    1.1e-37  128.0   0.3    1.9  1  Sin3_corepress  Sin3 family co-repressor
  ------ inclusion threshold ------
      0.074   11.9   0.2       0.13   11.1   0.2    1.3  1  FmdA_AmdA       Acetamidase/Formamidase family


Domain annotation for each model (and alignments):
>> Sin3a_C  C-terminal domain of Sin3a protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.17   7.8e+02      58      93 ..      27      59 ..      13      68 .. 0.77
   2 ?   -2.8   0.0      0.89     4e+03      63     100 ..     468     505 ..     452     507 .. 0.56
   3 !  254.3   1.0   4.2e-79   1.9e-75       2     279 ..     942    1215 ..     941    1218 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.17
     Sin3a_C 58 alrleseeeeeeyYsqllelveklldGeidqsqfEd 93
                + r+   +++ ++Y+++l+ ++++    id   + d
  KKY16433.1 27 KVRF---SDQPDVYNRFLDIMKDFKSQAIDTPGVID 59
                4555...78899***********9999998766655 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.89
     Sin3a_C  63 seeeeeeyYsqllelveklldGeidqsqfEdslRemfg 100
                 +   ++  Y ++l+lv+ + +  id+    d + +++g
  KKY16433.1 468 KVLGNKGQYAEFLKLVNVFTQDLIDKYVLFDRMNSFIG 505
                 33445556777777776666666666666666666665 PP

  == domain 3  score: 254.3 bits;  conditional E-value: 4.2e-79
     Sin3a_C    2 faNttfYvflrlfqiLyeRLlkikqaeeqv....aeevkerkankvavelgldkkesealalrleseeeeeeyYsqllelveklldGeidqsqfEds 94  
                  +aN+++Yvf+r fq+Ly+RLl +k++ee+v    a++++  ++ k+av+l+l++k ++++++++   +++++yY+q+++++e++l G++dq + Ed+
  KKY16433.1  942 YANNNIYVFFRFFQMLYSRLLALKESEEKVheivAKAMSHGQEVKPAVTLKLIDKLPTDFFKDV---SPTANYYKQVIQMCEDFLVGDVDQPHLEDT 1035
                  9***************************9966667778888899********************...****************************** PP

     Sin3a_C   95 lRemfgikaYklfTldKliqalvkqlqtiv.sDek..cqellelfekerskeettsqdeisyrkkaekllkdenlfriewkseskkltiqlldkdde 188 
                  lR+++++++++l+T+dKl++  vk ++ i+ sD+k  + ++++lf k+r++e tt ++e++yrk+++kl+kd++++ri ++ +++k  i+++ +++ 
  KKY16433.1 1036 LRRYYLKSGWQLYTVDKLVAVTVKAVHLILgSDSKdkSLDIVNLFFKDRDREVTTRSQELQYRKQVQKLVKDGEIYRISFNIQTTKTEIRYFPSEEL 1132
                  *******************************9*98889*********************************************************** PP

     Sin3a_C  189 tldddeveaeerwkeYvesYvlveptegvereklkkvfLkRnlkaerkeeekkeeeeqekaekeeeaekeleveekleiriclnsyklvyv 279 
                  t++ de+++e++w++Yv sY++ +pteg++ +k++k++L+Rnl+ ++ e + +e          +++   l  ee +eir+  ++ykl ++
  KKY16433.1 1133 TFESDELNEEAKWSYYVLSYSMIDPTEGIPWSKVHKPYLRRNLPGRDAEISTDEAF--------NNRFGPLLSEEHVEIRVIPETYKLHFE 1215
                  ******999**********************************5554444433322........2467788889***************98 PP

>> PAH  Paired amphipathic helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.0   3.9e-21   1.7e-17       1      45 []      35      79 ..      35      79 .. 0.99
   2 !   60.5   2.5   2.8e-20   1.3e-16       1      45 []     262     306 ..     262     306 .. 0.99
   3 !   26.6   0.2     1e-09   4.7e-06       3      44 ..     476     517 ..     474     518 .. 0.97
   4 ?   -3.2   0.1       2.2   9.8e+03       7      30 ..    1074    1104 ..    1074    1107 .. 0.51

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 3.9e-21
         PAH  1 evYkeFLdiLhdyqkeqidskeVyeqVskLFhdhpdLlreFnqFL 45
                +vY++FLdi++d++++ id+++V+ +Vs+LF +hp L+++Fn+FL
  KKY16433.1 35 DVYNRFLDIMKDFKSQAIDTPGVIDRVSNLFNGHPALIQGFNTFL 79
                79******************************************8 PP

  == domain 2  score: 60.5 bits;  conditional E-value: 2.8e-20
         PAH   1 evYkeFLdiLhdyqkeqidskeVyeqVskLFhdhpdLlreFnqFL 45 
                 e+Yk+FL+iL++yq+e++ +++Vy+qV +LF   pdLl++F+qFL
  KKY16433.1 262 EIYKQFLEILQTYQRESKPIQDVYAQVTQLFNTAPDLLEDFKQFL 306
                 89******************************************8 PP

  == domain 3  score: 26.6 bits;  conditional E-value: 1e-09
         PAH   3 YkeFLdiLhdyqkeqidskeVyeqVskLFhdhpdLlreFnqF 44 
                 Y eFL++ + ++++ id+  ++ ++ +++ +hp+Ll +F  F
  KKY16433.1 476 YAEFLKLVNVFTQDLIDKYVLFDRMNSFIGSHPELLNWFAKF 517
                 9***************************************99 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 2.2
         PAH    7 LdiLhdyqkeqidskeVyeq.........VskL 30  
                  Ldi + + k++    eV ++         V+kL
  KKY16433.1 1074 LDIVNLFFKDR--DREVTTRsqelqyrkqVQKL 1104
                  67777777776..55555542233333335555 PP

>> Sin3_corepress  Sin3 family co-repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.0   0.3   2.5e-41   1.1e-37       3      97 ..     546     639 ..     544     640 .. 0.97

  Alignments for each domain:
  == domain 1  score: 128.0 bits;  conditional E-value: 2.5e-41
  Sin3_corepress   3 lgpsYrlLpksyqqpkcsgrdelekevLNdewvsvptwasedsgsfkasrknqyeealfrcEderyelDmvieanrstiklleelakkiesmsee 97 
                     lgpsYr+Lp+++q++ c+grd+++ +vLNdew+s+ptw+sedsg f+a+rkn yeeal+r+E+er+++D++iea+++ti+l+e+l ++i+ m+e 
      KKY16433.1 546 LGPSYRKLPDKEQHKLCKGRDDVCYSVLNDEWASHPTWESEDSG-FIAHRKNIYEEALHRLEEERHDYDFNIEACQRTIQLMEPLVQQIRLMTEA 639
                     79*****************************************8.*********************************************99986 PP

>> FmdA_AmdA  Acetamidase/Formamidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   2.9e-05      0.13     137     216 ..     155     237 ..     130     240 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.9e-05
   FmdA_AmdA 137 pgvrfrglphpGllGtapskelldswnareeeliekralallpepkeallgkleeeaekvaaegartvppr...engGnmDik 216
                 pg r +++++ G+ G aps++ ++++ +r+e+  ++++ al+ ++++  +++l+++a+++a+ +ar  p     e gG  D+k
  KKY16433.1 155 PGSRPAVMAMFGQQGQAPSTDSVAAYSSRQEQENAASNAALVHQQEQRGVSQLQNAASAAANGTARSAPMAvspEPGGPGDVK 237
                 78899999********************9999999999999999999999999999999999999998865445778887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1038  (0.057895); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.98u 0.31s 00:00:01.29 Elapsed: 00:00:00.52
# Mc/sec: 7519.83
//
Query:       KKY16434.1  [L=328]
Description: putative aldo keto reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-60  205.1   0.0    1.7e-60  204.8   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.8   0.0   9.2e-65   1.7e-60       3     293 ..      13     308 ..      12     309 .. 0.94

  Alignments for each domain:
  == domain 1  score: 204.8 bits;  conditional E-value: 9.2e-65
                   EEE-SSS-ST..TS-HHHHHHHHHHHHHTT--EEE--TT-..TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHH CS
  Aldo_ket_red   3 glGtwqlgsk.eeiskeealellrraleaGinffDtAevY..gkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkr 96 
                   g+G+++l++  +++s++ea++++r+aleaG n+++ Ae+Y   +  s  ll e+ ++++++ ++v+++ K+     ++ ++ s+en r+s+e+ l  
    KKY16434.1  13 GFGLMSLTQIgSQVSRDEAFKAMRAALEAGANLWNGAEFYgpPDKNSLVLLREYYERYPEDADKVVLSVKG--CLPDMWPDNSPENARRSIETCLDA 107
                   89*****9879*****************************65567777779999999**************..555555678*************** PP

                   HT-.S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT.-HHHHTTHHHHHHHTT-EEEEBST CS
  Aldo_ket_red  97 Lgt.dyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynll.releeegllelckkkgvpliaysp 191
                   Lg   ++ ++  +r+dp++p +e ++ al+e+  +Gki aiG+S++s++ +++a   + +ki++v+ve +l+ r+++ +g+  +c+++++p+ aysp
    KKY16434.1 108 LGPkGKINIFGPARIDPKVP-LETTIPALHEFMAAGKIGAIGLSEVSAKTIRSA--AEQTKIASVEVELSLWcRDIFRNGVTAVCAEYDIPILAYSP 201
                   **989***************.*********************************..***************************************** PP

                   TGGGTTGTTTSS---SSSCCC-------..TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTS.....TT-SEEEE--SSHHHHHHHHGGGG--- CS
  Aldo_ket_red 192 lggGlltgkyqseedkedkeprkdlkrd..ertsknldaaeelselakehgvslaqlalryalsq.....pavgivipgasnieqlednldalelkl 281
                   lg+G++ g+ +s +d+++ + r+   r   e++s+nl++a e++++a  +g+sla l+++++ +q     ++v+i+ipgas+++q+e+n++    +l
    KKY16434.1 202 LGKGIFAGRFKSASDVGERDFRRFDARLqaENFSRNLQLAGEIQKIADRKGCSLARLSIAWVRQQsqrsgNPVIIPIPGASRLSQAEENFKEI--TL 296
                   ****************98777765444499***********************************999999**********************..** PP

                   -HHHHHHHHHHH CS
  Aldo_ket_red 282 seeevaeldell 293
                   +eee++++d++l
    KKY16434.1 297 TEEELERIDQVL 308
                   *********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.51
# Mc/sec: 1916.48
//
Query:       KKY16435.1  [L=345]
Description: putative quinone oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-23   82.0   0.0    5.7e-23   81.3   0.0    1.4  1  ADH_zinc_N    Zinc-binding dehydrogenase
    2.8e-18   67.2   0.0    4.6e-18   66.5   0.0    1.4  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
    1.2e-07   31.6   0.0    1.2e-05   25.1   0.0    2.5  2  ADH_N         Alcohol dehydrogenase GroES-like domain


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   9.6e-27   5.7e-23       2     122 ..     162     289 ..     161     298 .. 0.89

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 9.6e-27
                 HHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE... CS
  ADH_zinc_N   2 vGlaavqlAkalGa.eviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee... 96 
                 v +a+vq+ k  Ga +v++++s++ek+  ak+lGad+ + yke d++e++ ++t+g+g+d++++++G g  +e+ l++++++G +v  G+++g+++   
  KKY16435.1 162 VSIAGVQISKGDGAsKVYVTASTQEKINCAKSLGADVGFSYKEGDWSEALLKATNGKGADIIIDFIG-GPYFEQNLNAVARDGHIVNLGFLGGPKVkpa 259
                 67899************************************777***********************.**********************555555566 PP

                 ....EEHHHHHHTT-EEEEE-SSCHHHHHH CS
  ADH_zinc_N  97 ....fdlrnlllkeksilGsllgslreefk 122
                     +d++++l k+ +  G++l s  e+++
  KKY16435.1 260 ngtdIDISKFLVKRARYEGTTLRSRDETYQ 289
                 7777********************444444 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   7.7e-22   4.6e-18       1     132 [.     194     339 ..     194     340 .. 0.78

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 7.7e-22
                   TT-SEEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--.......S-EEE-CHHHCTTT-EEEE--GGG...-.. CS
  ADH_zinc_N_2   1 lGAdevidyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsig.gpp......lsaallkpakkrkgrsvkyeflfsmkas.. 84 
                   lGAd  + y++ d+     +at+g+g D+++d +gg+++ e+ l++++  G++v +g          +           +g  ++++ ++ +k+   
    KKY16435.1 194 LGADVGFSYKEGDWSeallKATNGKGADIIIDFIGGPYF-EQNLNAVARDGHIVNLGfL-GgpkvkpA-----------NGTDIDISKFL-VKRAry 276
                   8**************************************.****999555*****9943.22455552...........34444444443.222224 PP

                   ................-HHHHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEE CS
  ADH_zinc_N_2  85 ...............aqadileelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiV 132
                                   +  + e+ +  ++ G++r+++++vf++ee+++Ah ++es++++GK++
    KKY16435.1 277 egttlrsrdetyqgkLRDLVVEHSLPKLKNGTFRVPIEKVFKMEEIQDAHTLMESNKTMGKLI 339
                   444444445667775555556999*************************************97 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0     2e-09   1.2e-05       2      60 ..      34      96 ..      33      98 .. 0.87
   2 !    6.9   0.1   0.00092       5.5      82     107 ..      91     116 ..      84     118 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 2e-09
                TEEEEEEEEEEE-HHHHHHHTTS.TTTTSSSSEE---EEEEEEEEESTT-CS...--TT-EEE CS
       ADH_N  2 gevlikvkaagiCgsDlhilkgg.kelevklplilGHEivGeveevgpevkk...lkvGdrVv 60
                g++l+ +ka gi++ Dl   +g+   ++++++l +G E++G++e++g+   +   ++vGd+V+
  KKY16435.1 34 GQALVHIKAFGINRMDLLQREGNyPLPPQAQGLPMGVEFSGVIESFGSPSGDhetFNVGDEVF 96
                789*******************8667889999**************9654334569****996 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00092
                 TTBEETTTSS-SSSBSEEEECGGGEE CS
       ADH_N  82 eeakllgvsldGgfaeyvvvpekklv 107
                    +++g+ + G++aeyv+v++++l+
  KKY16435.1  91 VGDEVFGLAYGGAYAEYVTVSTHMLI 116
                 56789999*************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2271.89
//
Query:       KKY16436.1  [L=548]
Description: putative replication protein a 70 kda dna-binding subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-55  186.0   3.1    1.5e-53  180.5   1.5    2.3  2  Rep_fac-A_C      Replication factor-A C terminal domain
    1.9e-38  130.3   1.3    8.9e-38  128.2   0.5    2.5  3  REPA_OB_2        Replication protein A OB domain
    5.1e-13   48.8   0.2    2.1e-09   37.3   0.0    3.4  3  tRNA_anti-codon  OB-fold nucleic acid binding domain
      6e-11   42.3   0.2    1.9e-10   40.7   0.1    2.0  2  Rep-A_N          Replication factor-A protein 1, N-terminal d
    0.00011   22.1   0.1      0.025   14.3   0.0    3.0  3  CDC24_OB3        Cell division control protein 24, OB domain 


Domain annotation for each model (and alignments):
>> Rep_fac-A_C  Replication factor-A C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0051        18      55      80 ..     147     172 ..     127     240 .. 0.86
   2 !  180.5   1.5   4.1e-57   1.5e-53       1     146 []     391     538 ..     391     538 .. 0.98

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0051
                  EEEEEEE-SS-EEEEEEEHHHHHHHH CS
  Rep_fac-A_C  55 ilsikvsDstgqlwvtlFneaaekll 80 
                  + s+++ D++g++++t F+e+  +l 
   KKY16436.1 147 LFSVNLLDESGEIRATGFQEQCDTLY 172
                  67899****************98876 PP

  == domain 2  score: 180.5 bits;  conditional E-value: 4.1e-57
                  EEEEEEEEEEEETT..TTEEEB--STT---B-EEETTTEEEETTTTEEESS--EEEEEEEEEE-SS-EEEEEEEHHHHHHHHSS-HHHHHHHCCC-HH CS
  Rep_fac-A_C   1 yfsvkatvsfikkd..nlvYkACpsedCnkKvveeedgewrCekCdkeveepkyryilsikvsDstgqlwvtlFneaaekllglsaeelkklkeedee 96 
                  yfs+kat+++i+++  n++Y+AC se+CnkKv+e+e gewrCe+Cd+++++p+yryi+s++vsD+tgqlw++lF+e+++ ++g+sa++l++lke+de+
   KKY16436.1 391 YFSIKATIVYIRQEnfNVAYPACLSEGCNKKVIETEPGEWRCERCDRTHPRPQYRYIMSANVSDHTGQLWLNLFDETGRMVVGMSADDLMDLKERDEK 488
                  9************966789******************************************************************************* PP

                  HHHHHHHHTTT-EEEEEEEEE----------EEEEEEEEE--HHHHHHHH CS
  Rep_fac-A_C  97 efekiiekvklkeflfrlrvkeesyndesrvrytvvkvepvdykkeskrl 146
                  +++++++++++k+++f++r+k++s+++++rvry+v + +p++++ es++l
   KKY16436.1 489 AAAEVLQEATCKTWNFKCRAKMDSFQEQQRVRYQVSSCSPLNFAVESAKL 538
                  ********************************************998775 PP

>> REPA_OB_2  Replication protein A OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.1   3.9e+03      24      61 ..     134     168 ..     128     182 .. 0.65
   2 !  128.2   0.5   2.5e-41   8.9e-38       1      98 []     232     329 ..     232     329 .. 0.98
   3 ?   -1.5   0.0      0.66   2.4e+03      29      52 ..     448     471 ..     443     508 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.1
   REPA_OB_2  24 evseitskstekelkkreltlvDesgasvevtlWgkea 61 
                 ++++  ++++e   k  +++l Desg  ++ t + ++ 
  KKY16436.1 134 DIKTWHNRNGE--GKLFSVNLLDESGE-IRATGFQEQC 168
                 55555556555..55567899999984.6666666655 PP

  == domain 2  score: 128.2 bits;  conditional E-value: 2.5e-41
   REPA_OB_2   1 iselenvekdsivDvigvvksveevseitskstekelkkreltlvDesgasvevtlWgkeaekfesseepvvalkgvkvsdFggrslsllssstlkvn 98 
                 i +l++vekd+++Dv+gv+k+v+evs+itsk+t+k+++kreltlvD+sg+sv++t+Wg++a++f+   e+vva+kgvkvsdFggrslsllss++++v+
  KKY16436.1 232 IGDLQSVEKDTTIDVVGVLKDVGEVSQITSKTTSKPYDKRELTLVDNSGYSVRLTIWGNSATTFDVVPESVVAFKGVKVSDFGGRSLSLLSSGSMTVD 329
                 789********************************************************************************************986 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.66
   REPA_OB_2  29 tskstekelkkreltlvDesgasv 52 
                 +s + + ++ +  l+l+De+g++v
  KKY16436.1 448 MSANVSDHTGQLWLNLFDETGRMV 471
                 555556666677789999999987 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   5.7e-13   2.1e-09       1      71 [.     123     208 ..     123     213 .. 0.90
   2 !    6.6   0.0    0.0021       7.5      21      64 ..     273     316 ..     253     323 .. 0.79
   3 ?    0.4   0.0      0.18   6.5e+02      22      36 ..     451     465 ..     445     497 .. 0.63

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 5.7e-13
                      EEEEEEEEEEE.......EEEETTEEEEEEEETTEEEEEEEETHHHHHHHTTS-TTSEEEEE..EEEEECTTS......SEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsis.......drsggkvifidlrDgtgriqvvlfreeatklaenlkeGdvvrvt..Grvkrrpgg......elelkve 71 
                      +t+++r t++s       + ++gk++++ l D++g+i+++ f e+ + l++ ++eG+v++++  +rv+  +++      ++el+ +
       KKY16436.1 123 WTIKARCTNKSdiktwhnRNGEGKLFSVNLLDESGEIRATGFQEQCDTLYDLFQEGSVYYISspCRVQIAKKQfsnvnnDYELTFD 208
                      79***************99999************************************************8885666666777665 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0021
                      EEEEETT.EEEEEEEETHHHHHHHTTS-TTSEEEEEEE.EEECTTS CS
  tRNA_anti-codon  21 idlrDgt.griqvvlfreeatklaenlkeGdvvrvtGr.vkrrpgg 64 
                      ++l D++  +++++++    +++  ++ +++vv  +G  v+ + g+
       KKY16436.1 273 LTLVDNSgYSVRLTIWG--NSATTFDVVPESVVAFKGVkVSDFGGR 316
                      688899967********..999999***********6504444444 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.18
                      EEEETTEEEEEEEET CS
  tRNA_anti-codon  22 dlrDgtgriqvvlfr 36 
                       + D tg++ + lf+
       KKY16436.1 451 NVSDHTGQLWLNLFD 465
                      566666666666666 PP

>> Rep-A_N  Replication factor-A protein 1, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.1   5.3e-14   1.9e-10      54     100 ..       1      46 [.       1      47 [. 0.97
   2 ?   -2.2   0.0       1.2   4.4e+03      34      64 ..     513     543 ..     475     547 .. 0.56

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 5.3e-14
                 EESGGGHHHHHTTSSSTT-EEEEEEEEEEESTTSSEEEEEEEEEEEE CS
     Rep-A_N  54 mlatqLnslvksgklqklsivrlteyvvneikegrkvlivlelevvk 100
                 mlatq+n++v+ g+l+k+++vrl++y  ne+k g+k+li+lel+v++
  KKY16436.1   1 MLATQINHHVQGGSLRKGCFVRLKKYQANEVK-GKKILIILELDVLE 46 
                 9*******************************.9***********97 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.2
                 SSSS-EEEEEEESSSEEEEEEESGGGHHHHH CS
     Rep-A_N  34 eesseRyrlllsDgknkakamlatqLnslvk 64 
                  ++++R r  +s    +  a+ +++L++l+k
  KKY16436.1 513 FQEQQRVRYQVSSCSPLNFAVESAKLADLIK 543
                 3445555555555555555666666666665 PP

>> CDC24_OB3  Cell division control protein 24, OB domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.065   2.3e+02      23      68 ..     142     184 ..     134     202 .. 0.75
   2 ?    2.3   0.0     0.032   1.2e+02       5      54 ..     240     294 ..     236     318 .. 0.67
   3 !   14.3   0.0     7e-06     0.025     133     203 ..     391     480 ..     369     491 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.065
   CDC24_OB3  23 nsekkkmdryslrieDttGaidatlweea.gklhfkrlrvGhlvlls 68 
                 n+e  k++  s+++ D++G+i+at ++e   +l++   + G + ++s
  KKY16436.1 142 NGEG-KLF--SVNLLDESGEIRATGFQEQcDTLYDL-FQEGSVYYIS 184
                 4444.666..9*************987751455555.7777777766 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.032
   CDC24_OB3   5 kmlnvtLlGrvvai...freknsek.kkmdryslrieDttG.aidatlweeagkl 54 
                 k + + ++G++ ++   ++ +++++ k +d++ l++ D++G ++++t+w ++++ 
  KKY16436.1 240 KDTTIDVVGVLKDVgevSQITSKTTsKPYDKRELTLVDNSGySVRLTIWGNSATT 294
                 5566667777766666422233333479999**********55677888887654 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 7e-06
   CDC24_OB3 133 hfvvealiv..........itslaHssCgrpv...sggeleCefCqcsv..........aevv.refeleitLdddtssaklfalctgqtaielL 203
                  f ++a+iv          +   +   C+++v   + ge+ Ce C +++          a+v  ++++l ++L d+t++      + g +a +l+
  KKY16436.1 391 YFSIKATIVyirqenfnvaYPACLSEGCNKKVietEPGEWRCERCDRTHprpqyryimsANVSdHTGQLWLNLFDETGRM-----VVGMSADDLM 480
                 455677777777775554422333355888889*989*********************988888************8873.....3466666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3700.26
//
Query:       KKY16437.1  [L=336]
Description: putative dienelactone hydrolase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-19   70.8   0.1    4.6e-18   65.6   0.1    2.2  1  DLH            Dienelactone hydrolase family
  ------ inclusion threshold ------
      0.029   14.0   0.0        7.3    6.2   0.0    2.5  2  Abhydrolase_1  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.1   5.1e-22   4.6e-18      12     215 ..      83     335 ..      69     336 .] 0.80

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 5.1e-22
         DLH  12 kkpvvvviqeifGvn.dnikdiserlaeeGYvalaPdlYarqa.........................ldpndeaeaaraldelvskvaeekvlddlka 84 
                 +    + ++   Gv+  n +  +++ a+eGYv+++Pd + ++                          ++++ +    +++  +++    ekvl +l+ 
  KKY16437.1  83 PSRLLLLLTGGTGVHsINNQLQADKYASEGYVVVMPDQFSGDIaptaatdpnevapatpsiierlklgFAETAKSFMIDMWLARHT---PEKVLPILHK 178
                 45566777777899985556789****************************************98765544444444555544444...5577777744 PP

         DLH  85 avaylksv...pevstkkvgvvGfCmGGalalllaaevpevdaavafYG.......................lspekeleeaakikapilalfgeeDef 157
                  +++++       ++ + v +vG+C+G++ +l la e+  ++ +v   +                            e ++ + +kap+ ++  e+D+ 
  KKY16437.1 179 VLETARDEfadAVANGGGVYAVGYCFGAKYVLILAGEN--AESTVLGQPkeeadeeeamvksgpvikagaiaHATLVEKKDLTSLKAPVTMVCVENDQL 275
                 444444321102257799********************..799999999******************998875555566777899************** PP

         DLH 158 ipadevekleealkaanvdlelkvYpgagHaFan..dsresyneeaaedawervlelfkq 215
                 +pa+ +e  +e l+ +nv++e+kv+p++ H+Fa   d+++s  ++a+  a+ ++++++k+
  KKY16437.1 276 FPAEILEAGREYLESNNVKHEIKVFPEVPHGFAVvgDYSDSSIQNAQGIAFDQMINWLKA 335
                 ********************************9833566699999*************97 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0013        12       3      94 ..      87     216 ..      85     224 .. 0.63
   2 ?    6.2   0.0   0.00081       7.3     206     242 ..     247     293 ..     216     310 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0013
                    EEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB............CHH...........................SHHHHH CS
  Abhydrolase_1   3 lvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacin...........ddy...........................gtasva 60 
                    l++l G++g + +  + + a+  a +g+ v+++D+   +  ++a + +n                                          +  v 
     KKY16437.1  87 LLLLTGGTGVHSINNQ-LQADKYASEGYVVVMPDQFSGDIAPTAATDPNevapatpsiieR-LklgfaetaksfmidmwlarhtpekvlpILHKVL 180
                    8899999995554333.23333333499999999999999999988887776666555540.1444455555557777777777777776333344 PP

                    HHHH.HHHHHC.TTSSEEEEEETHHHHHHHHHHHHH CS
  Abhydrolase_1  61 ddld.rildal.gddkltlvGhSmGGmialayaaey 94 
                    +  +  + da  + + ++ vG+++G   +l +a e+
     KKY16437.1 181 ETARdEFADAVaNGGGVYAVGYCFGAKYVLILAGEN 216
                    444444434431445566999999999999998876 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.00081
                    C..........THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEE CS
  Abhydrolase_1 206 e..........lknvlaptlvisgtsDplvppkaledlaqllpkkrl 242
                    +          l+  +ap+ +++ ++D+l+p + le  ++ l +  +
     KKY16437.1 247 IahatlvekkdLTSLKAPVTMVCVENDQLFPAEILEAGREYLESNNV 293
                    15555555556788899****************99999998666333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2114.71
//
Query:       KKY16438.1  [L=317]
Description: putative sphingolipid long chain base-responsive protein pil1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-98  329.9   6.3    1.6e-98  329.5   6.3    1.1  1  Pil1      Eisosome component PIL1
  ------ inclusion threshold ------
      0.091   12.5   3.4       0.15   11.8   3.4    1.3  1  BAR_3     BAR domain of APPL family
       0.31   11.6  10.3        2.1    8.9   7.6    2.3  2  APG6_N    Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> Pil1  Eisosome component PIL1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.5   6.3  2.6e-102   1.6e-98       2     264 ..       6     250 ..       5     251 .. 0.93

  Alignments for each domain:
  == domain 1  score: 329.5 bits;  conditional E-value: 2.6e-102
        Pil1   2 nraysirsskastasesqteaspksstkskrlfslkslrsslrkqaaasfsPelarrLakLikseknlvraheaaarerksiakqlseWGedt.dddvs 99 
                 +ra+sirs+  +++    +e+       sk++fs++ lr+   +q       el+++L k+ik+e+++++a+e a+rer s+a qls WGe+t dd vs
  KKY16438.1   6 HRALSIRSKGGHDK----KEP-------SKHTFSVATLRGL--NQ------AELSKKLFKIIKTENHVISAYESASRERLSVASQLSDWGESTnDDTVS 85 
                 56666665544222....122.......2347888888887..55......79**************************************987999** PP

        Pil1 100 DvsDklgvllselgeledayadrldqsRatlKsirniEasvqpsRdkkekladeiaklkakepqserlvvlEqeLvraeaeslvaeaqlsnitReklke 198
                 D+sDk+gv+lse+ge+ed ya++l+++R+ lK+irn+E+svqpsRd+k+k +dei+klk+kep+s++lv+lEqeLvraea++lvaeaql+n+tR+klke
  KKY16438.1  86 DISDKIGVILSEIGEQEDLYAQNLEDYRTILKQIRNTESSVQPSRDHKSKTQDEIQKLKYKEPTSPKLVNLEQELVRAEAQNLVAEAQLTNVTRQKLKE 184
                 *************************************************************************************************** PP

        Pil1 199 aytaefdaliEraeKlallarygkrLlellddspvtpGetrpaYdgaeatrqiladaedaLrewrl 264
                 ay+++f+a+iEraeK+++lar+g+r+l+lldd+pv+pG++rpa+++ +++rq+l+dae +L  w++
  KKY16438.1 185 AYDIQFAATIERAEKQIILARHGRRILNLLDDTPVVPGDVRPAFEHGAEARQVLNDAEAELLAWQP 250
                 ****************************************************************97 PP

>> BAR_3  BAR domain of APPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   3.4   2.4e-05      0.15      26     128 ..      39     141 ..      35     200 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.4e-05
       BAR_3  26 elekklkkllKlckrlieagkaysaaqkqfaqsLrelkkeskgdeetdesLkkfsellqelenehtilldqaqr..sikkpLekFrkedlkevkekkkk 122
                 el+kkl k++K  + +i+a ++ s+   ++a++L++     ++d++ d s  k++ +l+e+ ++ + +++++++  +i k++ +  +  ++  +++k k
  KKY16438.1  39 ELSKKLFKIIKTENHVISAYESASRERLSVASQLSDWGESTNDDTVSDIS-DKIGVILSEIGEQEDLYAQNLEDyrTILKQIRNT-ESSVQPSRDHKSK 135
                 89***********************************9888888877754.8888888888888888888887511444444432.2344444444444 PP

       BAR_3 123 Fdkese 128
                  + e +
  KKY16438.1 136 TQDEIQ 141
                 444444 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.024   1.4e+02      48      86 ..      36      74 ..      16      81 .. 0.85
   2 ?    8.9   7.6   0.00036       2.1      16      90 ..     100     180 ..      92     200 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.024
      APG6_N 48 eleeleeeleklekeeeelleeLkelekereeleaelaa 86
                + +el ++l k+ k+e+  ++  + + +er +++++l++
  KKY16438.1 36 NQAELSKKLFKIIKTENHVISAYESASRERLSVASQLSD 74
                56789999999*************************986 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00036
      APG6_N  16 kqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeee......lleeLkelekereeleaelaaleee 90 
                 +q +   +  ++Y++ lk++++++++ + +++   ++++e++kl+ +e +      l++eL ++e+++   ea+l + +++
  KKY16438.1 100 EQEDLYAQNLEDYRTILKQIRNTESSVQPSRDHKSKTQDEIQKLKYKEPTspklvnLEQELVRAEAQNLVAEAQLTNVTRQ 180
                 555566677899***********99988889999999******99888651111115555555555555555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1288  (0.0718389); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 1972.14
//
Query:       KKY16540.1  [L=347]
Description: putative replication factor c subunit 4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-22   80.2   0.0    2.9e-22   78.9   0.0    1.8  1  Rep_fac_C        Replication factor C C-terminal domain
      1e-11   44.9   0.0    1.2e-08   34.9   0.0    2.2  2  DNA_pol3_delta2  DNA polymerase III, delta subunit
    7.9e-11   42.5   0.0    1.3e-10   41.8   0.0    1.4  1  AAA              ATPase family associated with various cellul
    1.2e-06   28.6   0.0    2.1e-06   27.8   0.0    1.4  1  AAA_14           AAA domain
    5.6e-06   26.8   0.0     0.0003   21.2   0.0    2.3  2  AAA_16           AAA ATPase domain
    2.4e-05   24.6   0.0      0.014   15.7   0.0    2.5  1  AAA_22           AAA domain
    6.8e-05   22.7   0.0    0.00011   22.0   0.0    1.3  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    7.1e-05   22.6   0.0    0.00017   21.4   0.0    1.6  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00014   21.7   0.1    0.00021   21.1   0.1    1.2  1  DNA_pol3_delta   DNA polymerase III, delta subunit
    0.00073   19.4   0.0     0.0017   18.2   0.0    1.6  1  AAA_3            ATPase family associated with various cellul
     0.0014   18.0   0.1      0.014   14.8   0.0    2.1  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0049   16.8   0.0     0.0091   15.9   0.0    1.5  1  Rad17            Rad17 P-loop domain
     0.0062   16.9   0.2      0.017   15.5   0.2    1.8  1  AAA_19           AAA domain
     0.0077   16.5   0.0      0.018   15.3   0.0    1.8  1  AAA_assoc_2      AAA C-terminal domain
      0.008   16.0   0.0      0.011   15.5   0.0    1.3  1  AAA_11           AAA domain
  ------ inclusion threshold ------
      0.015   15.0   0.0       0.11   12.2   0.0    2.1  2  AAA_24           AAA domain
      0.017   14.6   0.0        5.5    6.3   0.0    2.3  2  TniB             Bacterial TniB protein
      0.029   13.3   0.0      0.052   12.5   0.0    1.4  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.031   14.2   0.1       0.13   12.2   0.1    2.0  2  NTPase_1         NTPase
      0.043   13.5   0.3       0.18   11.5   0.3    2.1  1  AAA_30           AAA domain
      0.075   12.8   0.1        1.4    8.6   0.0    2.3  2  DEAD             DEAD/DEAH box helicase
        0.1   13.1   0.0        0.2   12.1   0.0    1.4  1  RGS12_usC        C-terminal unstructured region of RGS12


Domain annotation for each model (and alignments):
>> Rep_fac_C  Replication factor C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.0   3.5e-25   2.9e-22       1      88 []     246     332 ..     246     332 .. 0.97

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 3.5e-25
                 --HHHHHHHHHHHHHT-HHHHHHHHHHHHHHC---HHHHHHHHHHHGCCS..S-HHHHHHHHHHHHHHHHHHHCTH-HHHHHHHHHHH CS
   Rep_fac_C   1 phpteieeileaclngdfeeaykklrellvekGysaediltqlhrvvkeqeelpeaqkleilellgeiekrlveGasehlqlsallar 88 
                 php +++ +++ c  g+++ a ++l+ +l++ Gys  di+++++rv k+  +l+e+ kle+++++g++++r++eG+++ lqls+ +a+
  KKY16540.1 246 PHPIKVQAMIKCCWDGKIDMALDTLK-ELWDLGYSSHDIISTMFRVTKTTTTLSEHSKLEFIKEIGFTHMRILEGVQSFLQLSGCVAK 332
                 8************99**********6.***********************88********************************9986 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0033       2.7       2      47 ..      41      85 ..      40      91 .. 0.88
   2 !   34.9   0.0   1.5e-11   1.2e-08      84     162 ..     100     181 ..      91     182 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0033
  DNA_pol3_delta2  2 qeealkilskalksgrlahayLfeGdegigkkelalnlakallcee 47
                     +ee+++ l+ +++ g++ h ++++G  gigk ++ l+la++ll + 
       KKY16540.1 41 NEETVERLKIIARDGNMPH-MIISGMPGIGKTTSILCLARQLLGNA 85
                     6889999999999***999.578*****************998765 PP

  == domain 2  score: 34.9 bits;  conditional E-value: 1.5e-11
  DNA_pol3_delta2  84 kldqirelieelsrkpre...skkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelkfspl 162
                       +d +r+ i+ + +k +    +++k++i+++a+ mt+ A+ al +t+E  s+ + f +  +++nk++++++SRc +l+  +l
       KKY16540.1 100 GIDVVRNRIKGFAQKKVTlpsGRHKLVILDEADSMTAGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKL 181
                      6899998888888877755669******************************************************987765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   1.6e-13   1.3e-10       1     128 [.      60     177 ..      60     181 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1.6e-13
                 EEEESSTTSSHHHHHHHHHHHH.....THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS...TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel.....gvefleisgsellskyvgesekkirelfkeakeka...kpsilfiDEidalaksrsgseseeeervvnqLlt 91 
                 ++++G pG+GKT+ +  +a++l     +  +le+++s+ +   +    ++i+++ ++  +     +++ +++DE+d+++              +++L +
  KKY16540.1  60 MIISGMPGIGKTTSILCLARQLlgnayKEGVLELNASDER--GIDVVRNRIKGFAQKKVT-LpsgRHKLVILDEADSMTAGA-----------QQALRR 144
                 7899*****************866555677**********..9999999**999998433.347888***********8888...........****** PP

                 HHHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSEEE CS
         AAA  92 eldgvkkkeskvivigatnrpdkldpallrgRfdrki 128
                  ++ +++   ++ +  a+n+ +k+ ++l  +R+ +  
  KKY16540.1 145 TMEIYSN---TTRFAFACNQSNKIIEPLQ-SRCAILR 177
                 *****99...589****************.9*98765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   2.5e-09   2.1e-06       4     102 ..      59     164 ..      56     182 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 2.5e-09
      AAA_14   4 ilvitGaRrvGKTtllkqlikell..vkkesilyinldderdkkladpekllelilek.lke..ekktylflDEiqev.pewekalkslvd...egknl 93 
                  ++i+G+  +GKTt +  l+++ll  + ke +l++n  der  +   + ++  + ++k       ++++++lDE+  +  ++++al++ ++   +++++
  KKY16540.1  59 HMIISGMPGIGKTTSILCLARQLLgnAYKEGVLELNASDERGIDVVRN-RIKGFAQKKvT-LpsGRHKLVILDEADSMtAGAQQALRRTMEiysNTTRF 155
                 589**********************9999**********999775544.35555555542.245799********876367999***999943233445 PP

      AAA_14  94 dvivtGSns 102
                  + +  Sn+
  KKY16540.1 156 AFACNQSNK 164
                 555555554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.7e-07    0.0003       3      51 ..      39      84 ..      37      99 .. 0.81
   2 ?    3.2   0.0      0.13     1e+02     122     161 ..     111     148 ..      91     158 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3.7e-07
      AAA_16  3 vGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekd 51
                vG ee +e+L+ + +   +g  + +++sG++G+GK++ + +l+r+l ++
  KKY16540.1 39 VGNEETVERLKIIAR---DGNMPHMIISGMPGIGKTTSILCLARQLLGN 84
                677788888877665...666689********************99987 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.13
      AAA_16 122 llkrllallsrderplvlvlDdlqwadeaslqllaaLlrl 161
                   ++ + l s  ++  +++lD+++   ++ +q+l+ +++ 
  KKY16540.1 111 FAQKKVTLPSG-RH-KLVILDEADSMTAGAQQALRRTMEI 148
                 44444444444.34.6999***************998875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.7e-05     0.014       7      65 ..      59     113 ..      53     161 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.7e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralg 65 
                 ++++ G +G+GKTt++  l++ql   a+    + +v++ +++ + + + +++++  + +
  KKY16540.1  59 HMIISGMPGIGKTTSILCLARQLLGNAY----KEGVLELNASDERGIDVVRNRIKGFAQ 113
                 799*******************976665....555555555555544444444444333 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.4e-07   0.00011       2      81 ..      61     141 ..      60     148 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.4e-07
  Viral_helicase1   2 vvhGvpGcGKStlirkllrtsliltvnrptaelltegk...pklpnlsvrtvdsflmalvkstkgkililDEylllhaGyill 81 
                      +++G+pG GK+t+i  l+r+ l  +++++ +  l+++     ++ +++++++ +   +l    + k++ilDE+ +++aG  ++
       KKY16540.1  61 IISGMPGIGKTTSILCLARQ-LLGNAYKEGVLELNASDergIDVVRNRIKGFAQKKVTLPS-GRHKLVILDEADSMTAGAQQA 141
                      79******************.6666777766666666655588888888888877776665.58********99998886655 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0     2e-07   0.00017       2      58 ..      31      82 ..      30      94 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2e-07
      RuvB_N  2 rPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelg 58
                rP  l++ +g e+  e+lki+     +r+ ++ h++++G PG+Gktt    +a++l 
  KKY16540.1 31 RPIFLNDVVGNEETVERLKII-----ARDGNMPHMIISGMPGIGKTTSILCLARQLL 82
                999****************97.....58999****************9999998875 PP

>> DNA_pol3_delta  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   2.5e-07   0.00021      18     170 ..      81     225 ..      75     226 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.5e-07
                     HHHHHHTTTEEEEEEEE...-STTS-HHH.HTTTSTTTTSSSSEEEEEEE--.....TT-S-TTHHHHHHHHTTT--SSEEEEEEES.S--HHHH CS
  DNA_pol3_delta  18 ilkqalkqgfedlnyik...fdlnedwiddvleecetlpffsdkrivvlknpklltkesklnekllkeLeeylsnlpedtlLiliapkklderkk 109
                     +l +a+k+g  +ln ++   +d   + i+ + ++ +tlp  +  ++v+l+ +      ++ ++  +++L ++++ ++ +t + + ++    + +k
      KKY16540.1  81 LLGNAYKEGVLELNASDergIDVVRNRIKGFAQKKVTLP-SGRHKLVILDEA------DSMTAGAQQALRRTMEIYSNTTRFAFACN----QSNK 164
                     566666666666666654445666666666667777777.346799999999......569**************************....7789 PP

                     HHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHH CS
  DNA_pol3_delta 110 lvklLkkkatvveaktlkeeelkkwiqkraqelglkiekealelLlelvennlsaikqele 170
                     ++  L+++  ++++ +l+ +++ k + +++++++++ +++ l  L+ + e++++++ ++l+
      KKY16540.1 165 IIEPLQSRCAILRYAKLTDAQVMKRLLQIVEAEKVQYSDDGLAALIFSAEGDMRQAINNLQ 225
                     ***********************************************************97 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.1e-06    0.0017       1      88 [.      59     148 ..      59     165 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.1e-06
       AAA_3   1 hvllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpv...fanllladeinrappktqsalleamee 88 
                 h+++ g+PG++kt+ +  la++l  +  +     +l  sd  G++v++++ k f  kk  +    ++l++ de +  ++ +q al  +me 
  KKY16540.1  59 HMIISGMPGIGKTTSILCLARQLLGNAYKE-GVLELNASDERGIDVVRNRIKGFAQKKVTLpsgRHKLVILDEADSMTAGAQQALRRTMEI 148
                 99******************9886665553.345788888888888888887777776655222479******************999985 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.7e-05     0.014       2      58 ..      35      94 ..      34      99 .. 0.79
   2 ?    0.6   0.0      0.38   3.1e+02     107     131 ..     123     147 ..     110     156 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.7e-05
  Mg_chelatase  2 lkdvkGqeeakraleiaaa.Gg.HnlllvGppGsGKtmlakrlp.sllpplseeealeva 58
                  l+dv+G+ee+ + l+i a  G+  ++++ G pG GKt  + +l+ +ll +  +e +le +
    KKY16540.1 35 LNDVVGNEETVERLKIIARdGNmPHMIISGMPGIGKTTSILCLArQLLGNAYKEGVLELN 94
                  789******9999998665254359************99988852688888888888766 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.38
  Mg_chelatase 107 nGvLfLDElpefkrkvlevLRePle 131
                   + +++LDE+  +++ + ++LR+ +e
    KKY16540.1 123 HKLVILDEADSMTAGAQQALRRTME 147
                   45789****************9998 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.1e-05    0.0091       6      75 ..      23      88 ..      18     117 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.1e-05
       Rad17  6 nelWfekykPekaeelavhkkkieevkewlkadvLesrkkriLLisGPsGCgkstvvkvLskel.giklre 75
                  +W+eky+P  ++++    + +e +k   +   +++      +isG +G gk+t +  L+++l g  ++e
  KKY16540.1 23 ELPWVEKYRPIFLNDVVGNEETVERLKIIARDGNMPHM-----IISGMPGIGKTTSILCLARQLlGNAYKE 88
                568**************999999999988777777766.....9*****************9752666666 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   2.1e-05     0.017       7      85 ..      54     135 ..      48     225 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.1e-05
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTi....Hrlalldfddllt 85 
                 + + +++++ + pG GKT+ + +  + l+ +       + l a  +r  + +r+r++++ ++  T+    H+l +ld  d +t
  KKY16540.1  54 DGNMPHMIISGMPGIGKTTSILCLARQLLGNAYK-EGVLELNASDERGIDVVRNRIKGFAQKKVTLpsgrHKLVILDEADSMT 135
                 5567899******************999988854.355567788999999999999999999666543336665544444332 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.3e-05     0.018       3      33 ..     197     227 ..     195     282 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.3e-05
                  X.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  AAA_assoc_2   3 kklkleddalealaeladGDaRkaLnlLEla 33 
                  +k++++dd l+al+  a+GD+R+a+n L+  
   KKY16540.1 197 EKVQYSDDGLAALIFSAEGDMRQAINNLQST 227
                  6899************************954 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.4e-05     0.011      17      73 ..      58     172 ..      41     225 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-05
      AAA_11  17 seitliqGPPGtgKTktivellsqll..................................................sr.........rkseeeksakpr 56 
                 ++  +i+G PG gKT+ i+ l +qll                                                  s+         r+ e   ++++ 
  KKY16540.1  58 PH-MIISGMPGIGKTTSILCLARQLLgnaykegvlelnasdergidvvrnrikgfaqkkvtlpsgrhklvildeadSMtagaqqalrRTMEIYSNTTRF 155
                 34.79********************87777777777777766666666666666665555555555444444444411344433443334555566666 PP

      AAA_11  57 iLvCapSNaAvDeller 73 
                   +C +SN+ +  l +r
  KKY16540.1 156 AFACNQSNKIIEPLQSR 172
                 66666666666666666 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00014      0.11       5      91 ..      60     148 ..      56     159 .. 0.68
   2 ?    0.2   0.0      0.64   5.2e+02     104     142 ..     259     300 ..     249     341 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00014
      AAA_24   5 iliyGpsgiGKTtlakelgpkplfidtek.Glksldadkfpdie....swedfldevvelaaeladyktlviDtideleelclaevirqnek 91 
                 ++i G +giGKTt+++ l  + l+ +  k G+ +l+a +   i      ++ f ++ v+l+   +  k +++D +d +   + + ++r  e+
  KKY16540.1  60 MIISGMPGIGKTTSILCL-ARQLLGNAYKeGVLELNASDERGIDvvrnRIKGFAQKKVTLPSGRH--KLVILDEADSMTAGAQQALRRTMEI 148
                 7899**************.5555555544487777777655443333445555555555555555..8899999999888888888777666 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.64
      AAA_24 104 ygelaeefrrllkklqelrk...nvifiahektrkdedpege 142
                 ++   +   ++lk l++l++   ++i ++   t++ ++  + 
  KKY16540.1 259 WDGKIDMALDTLKELWDLGYsshDIISTMFRVTKTTTTLSEH 300
                 555556677889999999999999999998888877766555 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0068       5.5      23      52 ..      45      74 ..      29      86 .. 0.86
   2 ?    5.8   0.0    0.0098         8     115     144 ..     118     147 ..     103     154 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0068
        TniB 23 LeeLleypkrkrmpnlllvGdsnnGKtmiv 52
                 e+L   ++   mp++++ G + +GKt+ +
  KKY16540.1 45 VERLKIIARDGNMPHMIISGMPGIGKTTSI 74
                566666778899***************855 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0098
        TniB 115 lrelkvrvLiiDEihnllagsarkqrefln 144
                 l + + +++i+DE +++ ag +++ r++++
  KKY16540.1 118 LPSGRHKLVILDEADSMTAGAQQALRRTME 147
                 5566789**************999998875 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.3e-05     0.052      21      69 ..      49      97 ..      26     117 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.3e-05
                HHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE---- CS
        MeaB 21 rllakaGraqvvGltGvPGaGkstlvealglelrrrGkrvavlavDPss 69
                +++a+ G+   + + G+PG Gk t +  l+ +l  + ++ +vl ++ s 
  KKY16540.1 49 KIIARDGNMPHMIISGMPGIGKTTSILCLARQLLGNAYKEGVLELNASD 97
                5788999999999**************************9999887654 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00016      0.13       1      25 [.      59      83 ..      59      92 .. 0.84
   2 ?   -1.0   0.0       1.8   1.4e+03      95     147 ..     122     172 ..      81     194 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00016
                EEEEE--TTSSHHHHHHHHHHHH.. CS
    NTPase_1  1 kvfiTGppGvGKtTlvkkvlellks 25
                +++i+G+pG+GKtT +  ++++l  
  KKY16540.1 59 HMIISGMPGIGKTTSILCLARQLLG 83
                689************9999988854 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.8
                 HH-EEEE---STTGGG-HHHHHHHHHHHTTTSEEEEE--SS--SHHHHHHHT- CS
    NTPase_1  95 eadviviDEiGkmElkskkfkeaveevLksekpvlavihrrkdlalveeirer 147
                 +  ++++DE  +m   +++  +   e+ ++ + + +   ++  ++++e +++r
  KKY16540.1 122 RHKLVILDEADSMTAGAQQALRRTMEIYSNTTRFAFACNQS--NKIIEPLQSR 172
                 34577777777776655554444444444444444444443..4555555555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   0.00022      0.18      20     110 ..      59     144 ..      48     202 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00022
      AAA_30  20 vavltGpAGtGKttalkal.reaweaa.ggrvi.glAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagmvdtkqlaallk 110
                  +++ G +G GKtt++  l r+++ +a ++ v+ + A+ ++  +v+++ +   a+  +k++          +++l+i DEa  + +   +al +
  KKY16540.1  59 HMIISGMPGIGKTTSILCLaRQLLGNAyKEGVLeLNASDERGIDVVRNRIKGFAQ--KKVTL------PSGRHKLVILDEADSMTAGAQQALRR 144
                 4799**********98887688888776655552778888888888877544333..33331......22356999999997775555555544 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.25     2e+02      16      39 ..      59      82 ..      46      98 .. 0.80
   2 ?    8.6   0.0    0.0018       1.4     113     147 ..     114     147 ..      84     162 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.25
                EEEEEESTTSSHHHHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 16 dvlvaaeTGsGKTlaflipvlqiv 39
                ++++++  G GKT+  l  + q +
  KKY16540.1 59 HMIISGMPGIGKTTSILCLARQLL 82
                68999999******9888777665 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0018
                 HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 113 stgklnlsqvrflVlDEadrlldqgfsdfinriln 147
                 ++ +l   + ++++lDEad +     ++ ++r ++
  KKY16540.1 114 KKVTLPSGRHKLVILDEADSMTAG-AQQALRRTME 147
                 34445577889**********985.7777777655 PP

>> RGS12_usC  C-terminal unstructured region of RGS12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00024       0.2      40     110 ..     148     217 ..     108     223 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00024
   RGS12_usC  40 aeskprspaaalpgqkspsvPfsaplsPiphvqegaaqiwkRqsreleaegiQtvedenvAdLTLvgEGDi 110
                   s+++  a+a + ++++  P+++  +    ++ + aq+ kR  + +eae +Q   d+  A L   +EGD+
  KKY16540.1 148 IYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVMKRLLQIVEAEKVQYS-DDGLAALIFSAEGDM 217
                 4445555556666678999**********************************85.567899********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 2200.86
//
Query:       KKY16541.1  [L=605]
Description: hypothetical protein UCRPC4_g05878 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   15.8   3.4      0.011   15.8   3.4    3.1  4  DHR10      Designed helical repeat protein 10 domain
       0.21   11.8   2.2       0.46   10.7   0.1    2.5  3  Med30      Mediator complex subunit 30
        1.8    8.3  15.7      0.086   12.6   1.0    3.3  3  ERM        Ezrin/radixin/moesin family
        2.3    8.9   5.0         23    5.7   0.3    2.7  2  YabA       Initiation control protein YabA


Domain annotation for each model (and alignments):
>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.9       2.2     1e+04      72      90 ..      51      69 ..      32      88 .. 0.49
   2 ?   -2.0   0.1      0.83   3.7e+03      82      92 ..     354     364 ..     345     373 .. 0.55
   3 ?    1.5   0.7     0.065   2.9e+02      69     116 ..     423     470 ..     414     471 .. 0.73
   4 ?   15.8   3.4   2.5e-06     0.011      54     110 ..     510     566 ..     506     568 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.2
       DHR10 72 elrelerkeerlqrqlena 90
                + +e +r   +l++  ++ 
  KKY16541.1 51 TNSEAQRVLLLLEQHHKKL 69
                4444444444444433333 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.83
       DHR10  82 rlqrqlenaee 92 
                 r qrql+n  e
  KKY16541.1 354 RHQRQLSNISE 364
                 34555555544 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.065
       DHR10  69 keielrelerkeerlqrqlenaeeklerlreqaeekreaakarleelr 116
                 ++++ +el+ + + l+   +n  ++    + +a+   +a +++l +l+
  KKY16541.1 423 NNKTMEELTLENQALKHLADNLSKRVHMWEVNAQSSSAALQQSLRSLQ 470
                 555667777777777777777777777777777777777777777776 PP

  == domain 4  score: 15.8 bits;  conditional E-value: 2.5e-06
       DHR10  54 eakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreqaeekreaaka 110
                 ++k++++el++ + ++e+e+ + er+ e l+  + + +e+ e+l+e a+ +re + a
  KKY16541.1 510 TEKQRIDELEEIIRKMERERGKQERENEKLKNVVGRYRERWEKLKEGAKSRREGSAA 566
                 6899************************************************98876 PP

>> Med30  Mediator complex subunit 30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.54   2.4e+03      55      91 ..      60      98 ..      42     124 .. 0.69
   2 ?   10.7   0.1    0.0001      0.46      95     143 ..     405     455 ..     398     457 .. 0.87
   3 ?   -1.9   0.2      0.79   3.6e+03      54      59 ..     522     527 ..     506     558 .. 0.46

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.54
       Med30 55 rqlkvlfkkLrliYekckenc.qgleevp.iesLipyvd 91
                  l+ + kkL +i +  +en  qgl+  +  +  +p+++
  KKY16541.1 60 LLLEQHHKKLGQILKSRHENAsQGLQVAEpQDAALPITS 98
                457888899999988888888788875552445566665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0001
       Med30  95 skreerkkseevkqlkeerkelleklkeknkqLkeimdqlrk..llWdiNt 143
                 +   ++++++++ +++  +++ +e+l   n+ Lk++ d+l k   +W++N+
  KKY16541.1 405 TASRKATPASKSSPASGSNNKTMEELTLENQALKHLADNLSKrvHMWEVNA 455
                 5566778899999***************************765589****7 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.79
       Med30  54 lrqlkv 59 
                 +r+++ 
  KKY16541.1 522 IRKMER 527
                 222222 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.072   3.2e+02      17      76 ..      73     132 ..      54     145 .. 0.80
   2 ?    2.5   2.0     0.024   1.1e+02     136     196 ..     392     471 ..     344     493 .. 0.50
   3 ?   12.6   1.0   1.9e-05     0.086      82     125 ..     513     556 ..     509     596 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.072
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeee 76 
                 l++  e+a + L+ +e +   L   ++ ae +a  L +   ea+  i +l ++ + +++e
  KKY16541.1  73 LKSRHENASQGLQVAEPQDAALPITSKAAEAAATHLRATSPEANPVIPKLSQNFKPSHRE 132
                 456677888899999999999999999999999999999999999999998887766665 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.024
         ERM 136 s..............eseenveeset.eeeeenseeesaeletde....veklsleieeeRvtylekskrlqeqLkeLks 196
                                + ++ ++++++ ++ ++n++ e+  le+++     ++ls++     v++ + s  lq+ L+ L+s
  KKY16541.1 392 LrgrlsrqstsgstaSRKATPASKSSpASGSNNKTMEELTLENQAlkhlADNLSKRVHMWEVNAQSSSAALQQSLRSLQS 471
                 03333332222332211112222221022222222233333344344445566677777788888889999999999998 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 1.9e-05
         ERM  82 rklreaeleaarleeeserkeeeaerLkeeleeareaeeeakek 125
                 ++++e e+ ++++e+e+ ++e+e+e+Lk+ + + re+ e+ ke 
  KKY16541.1 513 QRIDELEEIIRKMERERGKQERENEKLKNVVGRYRERWEKLKEG 556
                 77899999999999999999999999999999999998887764 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.7     0.015        69      29      73 ..     425     469 ..     414     472 .. 0.80
   2 ?    5.7   0.3    0.0052        23      22      54 ..     513     552 ..     507     571 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXX CS
        YabA  29 eelaelleenaeLeleneklrerleeeekkekekkkelsegkenL 73 
                 ++++el+ en++L+   ++l +r++  e ++++++++l+++ ++L
  KKY16541.1 425 KTMEELTLENQALKHLADNLSKRVHMWEVNAQSSSAALQQSLRSL 469
                 578888899999999999999999888888888888888777766 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0052
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......XX CS
        YabA  22 eeleelkeelaelleenaeLeleneklrerl.......ee 54 
                 ++++el+e + ++  e  + e enekl++ +       e+
  KKY16541.1 513 QRIDELEEIIRKMERERGKQERENEKLKNVVgryrerwEK 552
                 5677777788888888888888888888777544322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1268  (0.0707234); expected 358.6 (0.02)
Passed bias filter:                      636  (0.0354733); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4135.21
//
Query:       KKY16542.1  [L=1217]
Description: putative gram domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-39  135.6   0.0    4.4e-39  134.4   0.0    1.7  1  VASt      VAD1 Analog of StAR-related lipid transfer domain
    8.2e-22   77.2   0.0    1.4e-21   76.4   0.0    1.4  1  GRAM      GRAM domain


Domain annotation for each model (and alignments):
>> VASt  VAD1 Analog of StAR-related lipid transfer domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   0.0   4.9e-43   4.4e-39       4     154 .]     807     952 ..     804     952 .. 0.93

  Alignments for each domain:
  == domain 1  score: 134.4 bits;  conditional E-value: 4.9e-43
                 EEEESS-HHHHHHHHHSS-THH.HHHHHHH.TT-BS-H.HHSE.........EEEEEEEE--SSSS-SEEEEEEEEE..EEEEETT.EEEEEEEEE-T. CS
        VASt   4 eevlpisvkalfellfgdksef.lkkfleerqkttdisvgpweeakekgkltRklsytkplkgsigpkqtkvtetqtilveeddly.yivvvtttktpl 100
                 +e++p+++++++++lfg +s++  +kfl e+qk td+++++ +  ++ +++tR++sy+kpl gsigpk+tk++ t++  ++  dl+ +i+v +tt+tp 
  KKY16542.1 807 DETVPAPLGKIYTMLFGPNSPLfVSKFLLEEQKVTDLQFEDRKGLSN-DVKTRQYSYIKPLGGSIGPKSTKCITTEN--LDFFDLEkAISVTCTTQTP- 901
                 899******************7689999999******9988876666.*****************************..667777779**********. PP

                 TSTTTTSEEEEEEEEEEEETTTE..E.EEEEEEEEEESS--TTHHHHHHHHHHH CS
        VASt 101 dvPygdsFsvetryvitwgsknskstcrltvstkvefsksswlkgiIekgalkg 154
                 dvP+g++Fsv+try+++w++ n   t r+++ +++e++ +swlkg Iekga++g
  KKY16542.1 902 DVPSGNAFSVKTRYCLSWAPGNG--T-RIQMNCGIEWTAKSWLKGPIEKGAIDG 952
                 ******************88777..6.***********99************97 PP

>> GRAM  GRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   1.6e-25   1.4e-21       2     113 ..     562     669 ..     561     670 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 1.6e-25
                 HHHHHS----TT--EEEEEEEEEESS.SEEEEEEEEESSEEEEEE-STT---EEEEEGGGEEEEEE....-TT-TT-EEEEESS-..EEEEE--TTHHH CS
        GRAM   2 lfrkkfkellpeEkllatykCyllrdggpvqGrlyltnyrlcFrskplgsskkvvlpladikriekstsaanllengiqvetsskdlelaFagfvtrde 100
                 +f++ f+++++++ l+++y+C+l+rd ++  Grly+++ ++cF+s++lg+ +++v+ + ++ +iek +s+a  ++n+i ++t +   + +F++  +r+ 
  KKY16542.1 562 NFHQLFRSVPDDDYLIEDYSCALQRD-ILLAGRLYISEGHICFSSNILGWVTTLVISFDEVMSIEK-ESTAMVFPNAIAIQTLHA--RHTFRSLLSREA 656
                 79************************.***************************************.******************..8*********** PP

                 HHHHHHHHHHH-X CS
        GRAM 101 aiefieellkkah 113
                 +++++   +k  h
  KKY16542.1 657 TYDLMIGIWKVSH 669
                 ****999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.47
# Mc/sec: 7743.62
//
Query:       KKY16543.1  [L=385]
Description: putative uv excision repair protein rad23 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-24   85.7   4.8    7.3e-14   51.3   0.3    2.5  2  UBA            UBA/TS-N domain
    3.6e-23   81.0   9.8    5.9e-23   80.4   9.8    1.4  1  XPC-binding    XPC-binding domain
    9.9e-21   73.3   0.1    1.6e-20   72.6   0.1    1.3  1  ubiquitin      Ubiquitin family
    6.7e-07   29.1   0.2      1e-06   28.5   0.2    1.3  1  Rad60-SLD      Ubiquitin-2 like Rad60 SUMO-like
     0.0046   16.7   0.0        4.6    7.1   0.0    2.4  2  UBA_3          Fungal ubiquitin-associated domain
  ------ inclusion threshold ------
      0.019   15.0   0.1      0.042   14.0   0.1    1.5  1  Rad60-SLD_2    Ubiquitin-2 like Rad60 SUMO-like
      0.023   15.0   0.1      0.038   14.3   0.1    1.3  1  Ubiquitin_5    Ubiquitin-like domain
       0.11   12.9   0.1       0.25   11.8   0.1    1.6  1  Ubiquitin_2    Ubiquitin-like domain
       0.33   11.6  14.8       0.25   12.0   0.3    2.4  2  Pex14_N        Peroxisomal membrane anchor protein (Pex14p) c
        1.3    8.2   7.9        1.6    7.8   7.9    1.1  1  SOG2           RAM signalling pathway protein
        5.9    6.8  11.8        8.4    6.3  11.8    1.2  1  TFIIA          Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.6     3e-12     5e-09       5      37 .]     151     183 ..     149     183 .. 0.96
   2 !   51.3   0.3   4.4e-17   7.3e-14       2      37 .]     341     376 ..     340     376 .. 0.96

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 3e-12
                 HHHHHHHTTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA   5 aiqrLveMGFdreevveALratgnNeErAveyL 37 
                 a++ + +MGF r+e+ +A ra++nN++rAveyL
  KKY16543.1 151 AVAMMESMGFGRQEIDRAMRAAYNNPDRAVEYL 183
                 58899***************************9 PP

  == domain 2  score: 51.3 bits;  conditional E-value: 4.4e-17
                 CHHHHHHHHHTTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA   2 deeaiqrLveMGFdreevveALratgnNeErAveyL 37 
                 + +ai+rL+ +GF+r++v++A++a+++NeE+A++yL
  KKY16543.1 341 ERDAIERLCRLGFPRNAVIQAYFACDKNEELAANYL 376
                 6799*******************************9 PP

>> XPC-binding  XPC-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   9.8   3.7e-26   5.9e-23       3      56 ..     264     317 ..     262     318 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 3.7e-26
  XPC-binding   3 fLrnnpqFqqlRqlvqqnPqlLqplLqqlaqsnPqllqlIqqnqeeFlqlLnep 56 
                  fLrnnp+FqqlRqlvqq P++L+p+Lqq+a+ nP l+++I++nq++FlqlL+e+
   KKY16543.1 264 FLRNNPHFQQLRQLVQQSPAMLEPILQQVAEGNPGLAEMISENQDQFLQLLSED 317
                  9**************************************************996 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.1   9.6e-24   1.6e-20       2      71 ..       4      73 ..       3      74 .. 0.95

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 9.6e-24
                EEEETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESS CS
   ubiquitin  2 tvktldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrl 71
                t++ l+++k+t+e e+s t++e+Kek+++++g  ++qq+LiysG +L d++t+e+y+i+++ ++++++++
  KKY16543.1  4 TFRDLKQQKFTIEAEPSATIAEVKEKVSQEKGWGVSQQKLIYSGNILTDDKTVESYNIEEKGFIVCMVSK 73
                666789*************************************************************987 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.2   6.3e-10     1e-06       1      68 [.       1      67 [.       1      71 [. 0.94

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 6.3e-10
                EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEE CS
   Rad60-SLD  1 ikiilkgkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdti 68
                +k++ ++ ++++++i+ +p+ t+ +++e+  ++kg  + ++++Li+ G  L +++tve++ ie++ +i
  KKY16543.1  1 MKLTFRDLKQQKFTIEAEPSATIAEVKEKVSQEKGWGV-SQQKLIYSGNILTDDKTVESYNIEEKGFI 67
                68889999999***************************.************************98665 PP

>> UBA_3  Fungal ubiquitin-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0028       4.6      11      31 ..     150     170 ..     148     171 .. 0.85
   2 !    6.9   0.0    0.0032       5.3      10      29 ..     342     361 ..     340     363 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0028
                 HHHHHHHHHT--HHHHHHHHH CS
       UBA_3  11 dlVdefvsqGFekdkvievLk 31 
                 ++V  ++s+GF+++ +  +++
  KKY16543.1 150 GAVAMMESMGFGRQEIDRAMR 170
                 689999********9977765 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0032
                 HHHHHHHHHHT--HHHHHHH CS
       UBA_3  10 rdlVdefvsqGFekdkviev 29 
                 rd+++ +   GF ++ vi++
  KKY16543.1 342 RDAIERLCRLGFPRNAVIQA 361
                 9*****************98 PP

>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   2.6e-05     0.042      20      72 ..      17      62 ..       2      97 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.6e-05
                 EETT-BHHHHHHHHHHHS-TT-SSS--SCCCEEEEETTEEE-TTSBCCCCS-T CS
  Rad60-SLD_2 20 fsdaatvaelkekviaqWPkdkeekpksvndlklilaGkiLennktlkelrlp 72
                  +++at+ae+kekv ++ +         v + kli++G iL + kt++++++ 
   KKY16543.1 17 AEPSATIAEVKEKVSQEKGW-------GVSQQKLIYSGNILTDDKTVESYNIE 62
                 46789999999999875332.......234568***************99654 PP

>> Ubiquitin_5  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   2.4e-05     0.038      29      85 ..       9      64 ..       2      75 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.4e-05
  Ubiquitin_5 29 keekkklletkLdvtgkelvskiaeefglkensiKlilngklleldktLeeQgvknn 85
                 k ++k ++e + + t  e+ +k+++e g   ++ Kli++g +l+ dkt e  +++++
   KKY16543.1  9 K-QQKFTIEAEPSATIAEVKEKVSQEKGWGVSQQKLIYSGNILTDDKTVESYNIEEK 64
                 3.478899999999**************9999*******************999876 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00016      0.25      12      75 ..       9      64 ..       2      76 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00016
                 S.SEEEEEEETTSBHHHHHHHHHHHH---TTCEEEEEE.-SSSSEEECSSGCCSBCCCCT--TT CS
  Ubiquitin_2 12 kavsserrfsksltieelKekLelitGtspasmrLqlyddkkdnevsklddddalLgsYgvkdg 75
                 k+  +++  ++s ti+e+Kek+ +  G  +++++L +          ++  dd++++sY++++ 
   KKY16543.1  9 KQQKFTIEAEPSATIAEVKEKVSQEKGWGVSQQKLIYS--------GNILTDDKTVESYNIEEK 64
                 55556778899************************998........566667777777777665 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   9.1       0.1   1.6e+02      62     103 ..      85     129 ..      56     141 .. 0.44
   2 ?   12.0   0.3   0.00015      0.25      29      92 ..     155     220 ..     147     288 .. 0.64

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.1
     Pex14_N  62 aseqa...qeesasssatpqpqaasqtsqsspspsppaqqqqqqy 103
                 a++++   +++ ++++++p pqaa  t++++p++++pa+++++++
  KKY16543.1  85 AAPSTpapAQQASTPAPPPAPQAAPATTANPPATPSPAPATSTTT 129
                 111112112222222223333333222222222223333333332 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00015
     Pex14_N  29 LesKGLtqeEIeeaLkraereeease.......savaassas.eqaqeesasssatpqpqaasqtsqsspsp 92 
                  es G   +EI++a++ a +++++++       +      +  +++++ +a ++a p p+a++q++ s+p++
  KKY16543.1 155 MESMGFGRQEIDRAMRAAYNNPDRAVeyllngiP------EGtNESARPQAGAQAAPAPAAPAQNTPSQPAT 220
                 57778999*********99999888855543331......22111111122222222222222222211111 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.9   0.00099       1.6     247     386 ..      72     291 ..      15     309 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00099
        SOG2 247 ssssgnsaspaangaqset.sersasssgvqssasstPlgegstsppgalsrqslsttgststltsssksrs........................... 317
                 s++++ ++++a+++a s++ + ++as+ + +  ++  P ++++++   a+++++++t++ t+++ s+ +  s                           
  KKY16543.1  72 SKPKSVPVASASKAAPSTPaPAQQASTPAPPPAPQAAPATTANPP---ATPSPAPATSTTTQPQASGFSDPSsfalgeqaegavammesmgfgrqeidr 167
                 444444444444444333202222222222222222222222222...3444444444444444444444445667777777999************** PP

        SOG2 318 .........................ssrsnt...nasastprslattpappasaesf.....astlt.asrintlaa...................vDe 363
                                           s+ ++   +a+  + ++ ++tp++pa++        a  ++ + ++    +                   vD 
  KKY16543.1 168 amraaynnpdraveyllngipegtnESARPQagaQAAPAPAAPAQNTPSQPATSDDSvnlfeAAAQHlGAST----QgaggartpgaagtggaedqVDM 262
                 ****99999999999999999886622222245555566666667777766666655455443333323322....12234667777777776666555 PP

        SOG2 364 q......lletletavklalvvysqltee 386
                         +++l++ v++++ +++ + ++
  KKY16543.1 263 SflrnnpHFQQLRQLVQQSPAMLEPILQQ 291
                 56666667777777777777777766665 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  11.8    0.0051       8.4      42     231 ..      84     291 ..      71     369 .. 0.48

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0051
       TFIIA  42 kaaefpwdpkpeeaqspqfvlqlpqslkqalqasaaaasqapastsqslpslvipagksvqslta....................nssaataatfslpa 120
                 kaa     p+p++++s ++   +pq++ ++ ++++a+ s+apa++++++p+++  +   ++s+                        +a  aa +++  
  KKY16543.1  84 KAAP--STPAPAQQASTPAPPPAPQAAPATTANPPATPSPAPATSTTTQPQASGFS--DPSSFALgeqaegavammesmgfgrqeIDRAMRAAYNNPDR 178
                 4443..45555555555555555555555555555544333333333333322111..12222211212222222333344433322223333333444 PP

       TFIIA 121 kleppvqipagvtlqtasgqlykvnvqasgaqqiaaqplqqvvqqsqgsaaqssvaalqaqsqqaqalaepqqq.lekq.................qqq 201
                 ++e+ ++ +   t+++a++q      +  +a+ + a+p+q++   sq++++ +sv+ ++a+ q+++a ++      +++                 +  
  KKY16543.1 179 AVEYLLNGIPEGTNESARPQ------AGAQAAPAPAAPAQNT--PSQPATSDDSVNLFEAAAQHLGASTQGAGGaRTPGaagtggaedqvdmsflrN-- 267
                 44443333333333333333......2333333333444444..47899999999999988777777777666644444899999876665444441.. PP

       TFIIA 202 qqqqqqqqqqq.qvqqqqqeesqqaqqa.sqe 231
                         +++ q+ +q  ++s +  ++  q+
  KKY16543.1 268 --------NPHfQQLRQLVQQSPAMLEPiLQQ 291
                 ........222222222211111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2687.88
//
Query:       KKY16544.1  [L=296]
Description: putative integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.063   13.6   0.0       0.13   12.6   0.0    1.6  1  DUF4969   Domain of unknown function (DUF4969)


Domain annotation for each model (and alignments):
>> DUF4969  Domain of unknown function (DUF4969)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.3e-06      0.13       1      39 [.       1      39 [.       1      61 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.3e-06
     DUF4969  1 mkkRgllLvsvLvlFillavaCsdsedneesveiilkei 39
                mk+R  +  s+L+ F lla aCs  +  e  +   + +i
  KKY16544.1  1 MKRRVKIGLSILMGFGLLAAACSAVKTSEIQALTKTDDI 39
                999999*****************9887776655555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.47
# Mc/sec: 1908.87
//
Query:       KKY16545.1  [L=545]
Description: putative cycloheximide resistance [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-26   92.2  23.0    3.1e-26   92.2  23.0    1.5  1  MFS_1     Major Facilitator Superfamily
    3.5e-09   36.0  14.1    3.5e-09   36.0  14.1    2.8  2  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2  23.0   3.4e-30   3.1e-26      10     325 ..      86     465 ..      77     491 .. 0.71

  Alignments for each domain:
  == domain 1  score: 92.2 bits;  conditional E-value: 3.4e-30
       MFS_1  10 larsilgpalpl.al..aedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslwlllvlrvlqGlgagalf 103
                 +  si+gp++   +l  a+++  + + +  + ++  + ++++++++++++ ++Grr+v+l++ +l+ +++++l +a   ++++++v+r++ G+ ++ + 
  KKY16545.1  86 FLGSITGPIMAAgMLplATQFDTTLQRLTYANGATLICQGLFNFLWMPFAVKYGRRPVYLASNFLMMIACIWLGVAstKTYTIFIVGRAFLGAWEAPIE 184
                 44455555554322233999999**********************************************6666655645555***************** PP

       MFS_1 104 pagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.............. 188
                 +++ + ++d+f   +rg  i+l+++++  G  lgp+++++++++lg  ++f+i+a +   +f+  ++++pe++ +  r+s  + +              
  KKY16545.1 185 SIVPSTVTDLFFLHDRGEKISLYGLAILGGNELGPMFSAIIIQALGMNWAFFIVAMFIGASFISTFFFMPETKYTGYRPSIFPSStvqetsakeaatsv 283
                 ***************************************************************666777666666666666666677778888888888 PP

       MFS_1 189 .................kgtgpaplvp......awkallkdpvlw...illialllfffgfsg......lltllplylqevlgls....glllagllla 251
                                    ++ +p+++      ++k ++++  l+    +l+a+++ ++++s+      +++ l++  +  ++++    gl  ++  + 
  KKY16545.1 284 eatdsnldppttlpkktYLQELKPWTTsdpnvnLLKTFVRPFILYtypTVLWACFVYGLALSYnvilgaTVAQLFS--VAPYNFDsqaqGLTFLS--PF 378
                 8889999999988877744455555557777755555555554424443333333333344444443355555555..56666667666655555..67 PP

       MFS_1 252 llalvgail.allagrlsdr........lgrrrrlllallllllaalglallavt..ssavllll..vlvliGfglgfvfpsllala 325
                 +++lvg  l +++a ++++           ++ rl    ++++++++g +++a++  ++++++++  ++ ++++g  +  ++++++a
  KKY16545.1 379 VGSLVGTYLcGPCADAIANYytkknngiREPEMRLPTCAVAAFFTFFGTLWAALAydHKTHWAVVvvGYGVLSIGTQMGATLSMSYA 465
                 7777776666555555555565557777777************************65444444432222223333333344444444 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0  14.1   3.9e-13   3.5e-09     287     442 ..     111     258 ..      73     261 .. 0.88
   2 !    3.1   1.2    0.0038        34      43      73 ..     359     395 ..     315     464 .. 0.81

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 3.9e-13
                 THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHH CS
    Sugar_tr 287 sksllvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRs 385
                 +   ++++ + + + ++ f ++++  + GRR+++l + + m+i+++ lg  ++ +++       ++iv+ a+ + + ++ + +++  +v++lf ++ R+
  KKY16545.1 111 QRLTYANGATLICQGLFNFLWMPFAVKYGRRPVYLASNFLMMIACIWLG--VASTKT-----YTIFIVGRAF-LGAWEAPIESIVPSTVTDLFFLHDRG 201
                 344789999999999*********************************9..333222.....3577777765.5778888999999************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT CS
    Sugar_tr 386 kalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkg 442
                   +++   +    n l  ++  ii +a+g  + f++ a++  +++i +fff+petk 
  KKY16545.1 202 EKISLYGLAILGGNELGPMFSAIIIQALGMNWAFFIVAMFIGASFISTFFFMPETKY 258
                 *******************************************************95 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.0038
                 H.........HHHHHHHTHHHHHHHHHHHHHHHHHHT CS
    Sugar_tr  43 e......ssvlsglivsiflvGaiiGslfagllgdrf 73 
                 +       s  +gl++ + +vG+++G ++ g+++d +
  KKY16545.1 359 SvapynfDSQAQGLTFLSPFVGSLVGTYLCGPCADAI 395
                 3444444556789*******************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 3392.46
//
Query:       KKY16546.1  [L=607]
Description: putative 3-(3-hydroxy-phenyl)propionate hydroxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-75  253.4   0.0    5.1e-75  252.9   0.0    1.2  1  FAD_binding_3  FAD binding domain
    0.00018   20.9   0.0     0.0062   15.8   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0014   19.1   0.0      0.078   13.5   0.0    2.7  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0039   17.4   0.0      0.011   16.0   0.0    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0072   15.9   0.1      0.035   13.7   0.0    2.0  2  DAO            FAD dependent oxidoreductase
  ------ inclusion threshold ------
       0.03   13.6   0.0      0.052   12.8   0.0    1.4  1  Thi4           Thi4 family
      0.058   12.5   0.0       0.14   11.2   0.0    1.6  2  FAD_binding_2  FAD binding domain
      0.066   11.9   0.0       0.13   11.0   0.0    1.4  1  HI0933_like    HI0933-like protein
        0.1   11.8   0.1       0.19   10.9   0.1    1.4  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
       0.18   11.1   0.0       0.33   10.3   0.0    1.4  1  FAD_oxidored   FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.9   0.0   2.8e-78   5.1e-75       2     343 ..      15     363 ..      14     369 .. 0.89

  Alignments for each domain:
  == domain 1  score: 252.9 bits;  conditional E-value: 2.8e-78
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-H.HHHHHHSEECC.CCEEEEEEECCCC.....CEEEEEH CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGle.drilaegapne.lmgealynelsdt.....pkaradl 90 
                    ++VlI+G+Gp+Gl  a lL+  Gv++++ve++ ++   p+a+ +n+rt+e+ rq Gl+ ++i+a g+p++  +  ++ ++ls+      p  r d+
     KKY16546.1  15 VPVLIIGGGPTGLFQAYLLACLGVKCLVVERYPQRLGAPKAHAVNPRTLEICRQFGLKvHEIRAIGTPRKdAFWVNFITTLSGEavgrlPYERMDV 110
                    89*******************************************************7589*****987613444444443333555347777777 PP

                    H.CHHCST-CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEE CS
  FAD_binding_3  91 e.lesspervtvypqteleriLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvye 184
                      l+ +pe+++++pq+e+er++++ +++++ ++++++  ++sl++ +++v ++v ++ tg++ ++++  ++++DG++S+vr+ l +e  ge +v  
     KKY16546.1 111 GvLDDTPEMIHNIPQPEFERYVEDTLSSEPnVRIEKGVSFVSLKNGDKEVITTVEYRPTGQHFNITSSHVIACDGANSKVREFLQVESDGEPSV-- 204
                    6788****************************************************************************************99.. PP

                    EEEEEEEEEC-SCCCTTC....CEEEEECCTTEEEEEECCE.TEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEEEEEEEEEEEE CS
  FAD_binding_3 185 agvldvlfdadlsdivep....lvlilsaesrgvmviPlen.tlerfyvqvearaekeersekfteeevkarlreivgektldveieevsawtvaq 275
                     +++ ++f+adl+ +v +    l+++  +e  g+ +  ++  + +   v+++ + ++++ +e  +ee ++++l +++g k+ + +i +++ w  ++
     KKY16546.1 205 QTMMTIHFNADLRPVVGErvgmLHWVMDPEGAGFII-GYDLaGNQ---VHISNYSTEKTPTESWNEEMCRNILCSAIG-KECPFDIHSFRPWIFRR 295
                    9************99999***99*********9654.45543444...777777777777888888888888888887.57899************ PP

                    EEESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHH CS
  FAD_binding_3 276 rvaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaq 343
                    ++a+kyr g+v+laGDAaH  pPtgG+GlN ++ D++nLa k aav +G+A +++LdtY+ err va 
     KKY16546.1 296 KIANKYRVGNVLLAGDAAHSFPPTGGLGLNCGLADVHNLAFKVAAVHRGWATDSILDTYQPERRHVAD 363
                    *****************************************************************996 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.4e-06    0.0062     137     201 ..       9      74 ..       2      96 .. 0.81
   2 ?    2.8   0.0     0.033        58     169     240 ..     111     189 ..      95     212 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.4e-06
                  CCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHHHHHHHHHHHTTEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 137 klkllpkrivvvGgGyiGvElAaalaklgkevtlveardrll.raldkelsaaleealekeGvevk 201
                  +l+ ++  ++++GgG++G+  A  la lg++  +ve+ ++ l  +  +++  +  e  ++ G +v+
   KKY16546.1   9 HLEDVRVPVLIIGGGPTGLFQAYLLACLGVKCLVVERYPQRLgAPKAHAVNPRTLEICRQFGLKVH 74 
                  344444569*****************************9999777777788887787777777776 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.033
                  EEEESSSSSS.TTS-HHHHHHHHHHHHHT.TEEEEESCEEEEEEETTEEEEEEETTSCE.......EEESEEEE-S-EEES CS
                  xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxx RF
  Pyr_redox_2 169 tlveardrll.raldkelsaaleealeke.Gvevklgtsvkeidgngeklevvledgee.......idadlvvvavGvrps 240
                   ++++ +++  +  ++e+++++e+ l  e +v++  g s++ +++ ++  ev+++ + +       i  + v+ + G   +
   KKY16546.1 111 GVLDDTPEMIhNIPQPEFERYVEDTLSSEpNVRIEKGVSFVSLKNGDK--EVITTVEYRptgqhfnITSSHVIACDGANSK 189
                  556666666644445777777777777777777777777777765555..3333333333334445666666666654433 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   4.4e-05     0.078       2      35 ..      17      50 ..      16      74 .. 0.90
   2 ?    2.4   0.0      0.13   2.4e+02      24      77 ..     109     165 ..      99     171 .. 0.83
   3 ?   -4.0   0.0        10   1.8e+04      18      35 ..     531     548 ..     529     559 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.4e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                v+++GgG +gl  A  la lg k  vver ++ l
  KKY16546.1 17 VLIIGGGPTGLFQAYLLACLGVKCLVVERYPQRL 50
                89***************************98876 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.13
                 EEEEEESSSSSS.TTSSHHHHHHHHHHHHHT.TEEEECSEEEEEEEEETTS.EEEEE CS
   Pyr_redox  24 kVtvversdkll.rllDeeaskilqeklekn.gievllntkveeiegsedg.vesvk 77 
                 +V v++  +++  +   +e+++++++ l+ + ++++  + + ++++  +++ +++v+
  KKY16546.1 109 DVGVLDDTPEMIhNIPQPEFERYVEDTLSSEpNVRIEKGVSFVSLKNGDKEvITTVE 165
                 5666777777776777789*********9999**************88888777666 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 10
                 HHHTTSEEEEEESSSSSS CS
   Pyr_redox  18 laelgkkVtvversdkll 35 
                 +++ g k  vv+ +d + 
  KKY16546.1 531 YSARGLKFRVVHLEDDFN 548
                 677888999999988776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.9e-06     0.011       1      29 [.      19      47 ..      19      61 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.9e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   I+G+G +Gl  AylLa  g+++l++e+ +
     KKY16546.1 19 IIGGGPTGLFQAYLLACLGVKCLVVERYP 47
                   9*************************864 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.9e-05     0.035       2      30 ..      17      47 ..      16      57 .. 0.89
   2 ?   -0.6   0.0      0.43   7.7e+02     161     227 ..     142     210 ..     137     286 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.9e-05
                EEEECTSHHHHHHHHHHHHTT..EEEEESSS CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllekgd 30
                v+iiGGG +Gl+ Ay La  g   +++e+ +
  KKY16546.1 17 VLIIGGGPTGLFQAYLLACLGvkCLVVERYP 47
                89***************999999*****984 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.43
                 -EEEESECEEEEEEEE.TCEEEEE.EECT.EEE.EEEEEEEE--GGGHH..HHHTTCTTTSEEEEEEEEEEEE CS
         DAO 161 veilegtevtgleeed.gkvwgve.rttp.gen.daadavVnaaGawsd..llgllkeldlpispvrgqvlvl 227
                 v+i +g   ++l++ d + +++ve r t  + n ++  +v+ + Ga s+  ++    +++   +p   +++++
  KKY16546.1 142 VRIEKGVSFVSLKNGDkEVITTVEyRPTGqHFNiTS-SHVIACDGANSKvrEF---LQVESDGEPSVQTMMTI 210
                 566666666777665545677776744432333223.5599999999865433...22222224444444444 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.9e-05     0.052       9      49 ..       6      45 ..       1      51 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.9e-05
                HHHHHHHTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4  9 fedllkyaesDvvivGaGssGLtaayylakkpdlkvailer 49
                 ++ l+ +   v+i+G+G++GL  ay la   ++k +++er
  KKY16546.1  6 TDKHLEDVRVPVLIIGGGPTGLFQAYLLACL-GVKCLVVER 45
                555666677889******************9.*******98 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.1e-05      0.14       2      34 ..      17      49 ..      16      57 .. 0.90
   2 ?   -2.3   0.0      0.99   1.8e+03     209     256 ..     165     212 ..     134     280 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.1e-05
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqef 34
                   v++iG+G  GL  A+ +a  G k++vve  +++
     KKY16546.1 17 VLIIGGGPTGLFQAYLLACLGVKCLVVERYPQR 49
                   8***************************98875 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.99
                    ......GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET CS
  FAD_binding_2 209 ellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslv 256
                    e++++++ + +t+ + +  dg  + +r  ++++ d    vq++ t ++
     KKY16546.1 165 EYRPTGQHFNITSSHVIACDGANSKVREFLQVESDGEPSVQTMMTIHF 212
                    556666666666666555555555566555555555666666666555 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     7e-05      0.13       3      33 ..      17      47 ..      15      51 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7e-05
                 EEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  3 viviGgGaAGlmaAisaakrgkrVlllekak 33
                 v++iGgG+ Gl+ A  +a  g + l++e+ +
   KKY16546.1 17 VLIIGGGPTGLFQAYLLACLGVKCLVVERYP 47
                 89************************99865 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00011      0.19       1      29 [.      18      45 ..      18      82 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEk 29
                 +IiG+GP Gl  a+ l  +g+ + l++E+
   KKY16546.1 18 LIIGGGPTGLFQAYLLACLGV-KCLVVER 45
                 6********************.79****8 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00018      0.33       2     140 ..      17     181 ..      16     186 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignkaee.....................qvvtgiareflerlrq.rgga... 73 
                   v+++GGgp G+  A+  a  G k l+ve+++   G   + +v++ +    ++                     + +t + +e + rl   r      
    KKY16546.1  17 VLIIGGGPTGLFQAYLLACLGVKCLVVERYPQRLGAPKAHAVNPRTLEICRQfglkvheiraigtprkdafwvNFITTLSGEAVGRLPYeRM-Dvgv 112
                   9*****************************98777777777777666333334455555666777555555555555555555555544222.2222 PP

  FAD_oxidored  74 .rlkkrskwn.......tfepevakavleemlaeagvtvllntrlvevekegkr.iesvtveskegrktirAkvfi 140
                    +               + +pe+ + v + + +e++v++  +  +v+ +  +k+ i+ v+ +   +  +i+++ +i
    KKY16546.1 113 lD-------DtpemihnIPQPEFERYVEDTLSSEPNVRIEKGVSFVSLKNGDKEvITTVEYRPTGQHFNITSSHVI 181
                   21.......0222223377777777777777788888888888888887755445777777543347777666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 4086.73
//
Query:       KKY16547.1  [L=384]
Description: putative aquaglyceroporin like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-53  180.9   5.1    3.6e-53  180.6   5.1    1.1  1  MIP       Major intrinsic protein


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.6   5.1     2e-57   3.6e-53       8     227 .]      53     302 ..      46     302 .. 0.91

  Alignments for each domain:
  == domain 1  score: 180.6 bits;  conditional E-value: 2e-57
                 HHHHHHHHHHHHHHHHHHHHHHHCCCSSCSSSSTTSS...HHHHHHHHHHHHHHHHHHHHHHHCHT-S-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHH CS
         MIP   8 lravlAEflatlllvfigvgsalnvkkkvsslaslvs...vtleavalafglalavlvylaagiSGaHlNPavTlallvarkisllrailYivaQllGa 103
                 +r+  AEfl+ ++++++g gs+++v  ++s++  + s   +t++++++++gl+++ +vy+  g  G+HlNPa+T+ ++++r +s ++ ++Y vaQ lGa
  KKY16547.1  53 IRDPAAEFLGVMIMIIFGDGSVAQVLLSSSTNLPESSqdkGTYQSISWGWGLGVMLGVYV-SGCAGGHLNPAITFINCIFRDFSWKKFPIYAVAQTLGA 150
                 78889***************555544444332222223569*****************97.5789********************************** PP

                 HHHHHHHHHHCHHH..................HHHTTTTSSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHCSTTSSSSTCHGHHHHHHHHHHHHHHHHH CS
         MIP 104 ivaaallklltkgl..................esraglfanslkpglsagqalvvEiiltfvLvlvvfaltddkrkvslgelaplaigllvaliilvgi 184
                 +++aa++++ +k++                  + +ag f+++++p +  +  +++E+i   vL +v+fal dd + +  g+l pla+++l++ i +  +
  KKY16547.1 151 FCGAAIIYGNYKSAidvyeggagirtvpgyseHATAGVFCTYPQPFMERVGMFFSEFIASTVLAFVIFALKDDANLGA-GNLIPLALFFLIFGIGATLG 248
                 *****************************9998999**************************************9999.******************** PP

                 HHHST-SSHHHHHHHHHHHTH...........STTTTHHHHHHHHHHHHHHHHH CS
         MIP 185 pltGaamNpArslgpavvlnk...........fedhwvylvGPliGailgalvY 227
                   tG a+N+Ar++gp++++++             ++w+++v P++G   ga++Y
  KKY16547.1 249 WETGYAINLARDFGPRLFTYTvgygphvwtagGYYFWIPVVSPFLGCTFGAFLY 302
                 ****************************7777668*****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.53
# Mc/sec: 2160.94
//
Query:       KKY16548.1  [L=150]
Description: putative tetratricopeptide repeat domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-09   35.3   3.8    9.7e-05   22.2   0.1    3.4  3  TPR_2     Tetratricopeptide repeat
    2.4e-07   31.0   2.2     0.0088   16.3   0.1    2.6  3  TPR_12    Tetratricopeptide repeat
      1e-06   28.3   1.6    0.00084   19.1   0.1    3.1  3  TPR_1     Tetratricopeptide repeat
    0.00016   21.5   0.0       0.09   12.8   0.0    2.4  2  TPR_3     Tetratricopeptide repeat
    0.00018   21.3   2.2        0.2   11.8   0.1    2.9  3  TPR_7     Tetratricopeptide repeat
     0.0003   20.8   2.4      0.019   15.2   0.1    3.0  3  TPR_8     Tetratricopeptide repeat
     0.0003   21.2   1.0      0.028   14.9   0.1    2.5  2  TPR_19    Tetratricopeptide repeat
    0.00036   20.2   0.7      0.028   14.1   0.0    2.5  3  TPR_11    TPR repeat
    0.00059   20.4   1.4      0.092   13.4   0.1    2.7  3  TPR_16    Tetratricopeptide repeat
     0.0035   17.4   0.1       0.32   11.1   0.0    2.4  2  MIT       MIT (microtubule interacting and transport) domain
     0.0041   17.3   0.8       0.11   12.8   0.0    2.5  3  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
     0.0072   16.4   0.1       0.78    9.9   0.0    2.6  2  TPR_9     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.016   16.0   1.7          2    9.5   0.0    3.0  3  TPR_14    Tetratricopeptide repeat
      0.026   14.4   3.8       0.55   10.2   0.0    2.8  3  TPR_10    Tetratricopeptide repeat
      0.092   13.4   2.6        3.8    8.4   0.1    3.1  3  TPR_6     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0033       3.9       9      24 ..      19      34 ..      14      35 .. 0.85
   2 ?    4.8   0.1      0.03        35       1      19 [.      58      76 ..      58      77 .. 0.88
   3 !   22.2   0.1   8.1e-08   9.7e-05       3      31 ..      95     123 ..      93     125 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0033
       TPR_2  9 layyklgdyeeAleaf 24
                  + ++g+y+eA++++
  KKY16548.1 19 STAHRKGNYAEAVRLY 34
                56789********998 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.03
       TPR_2  1 aealynlGlayyklgdyee 19
                a ++ n+++++++++++ e
  KKY16548.1 58 ALLYANRAQSHMAAQNWVE 76
                57899**********9965 PP

  == domain 3  score: 22.2 bits;  conditional E-value: 8.1e-08
       TPR_2   3 alynlGlayyklgdyeeAleafekAleld 31 
                 a+++ G+++y++g+y +A+e++ kAlel+
  KKY16548.1  95 AWWRGGKCLYEMGRYTDAAEWLTKALELE 123
                 677779*********************96 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.4   4.4e-05     0.053       8      56 ..      16      62 ..       9      76 .. 0.78
   2 ?    0.3   0.1      0.76     9e+02       3      25 ..      58      80 ..      55      90 .. 0.68
   3 !   16.3   0.1   7.4e-06    0.0088      10      32 ..     100     122 ..      91     147 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.4e-05
      TPR_12  8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyr 56
                + a++ +r g+y+eA +l+  ++++a++   p ++    ++  L+ ly 
  KKY16548.1 16 ETASTAHRKGNYAEAVRLYSFSIDMANQR--PAWEPSGLVRDELALLYA 62
                579999********************888..888888888888888885 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.76
      TPR_12  3 atalnnlaavlrrlgrydeAlel 25
                a ++ n+a+ +++++++ e  + 
  KKY16548.1 58 ALLYANRAQSHMAAQNWVEGWKD 80
                44454899999999988876555 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 7.4e-06
      TPR_12  10 aavlrrlgrydeAlellekalei 32 
                 + +l+++gry++A e+l kale+
  KKY16548.1 100 GKCLYEMGRYTDAAEWLTKALEL 122
                 44555555555555555555555 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.013        16      11      26 ..      21      36 ..      18      41 .. 0.81
   2 ?    1.3   0.1       0.3   3.6e+02       1      17 [.      58      74 ..      58      76 .. 0.81
   3 !   19.1   0.1   7.1e-07   0.00084       8      31 ..     100     123 ..     100     125 .. 0.95

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.013
                HHHTT-HHHHHHHHHH CS
       TPR_1 11 yfklgkydeAleyyek 26
                 +++g+y eA+  y+ 
  KKY16548.1 21 AHRKGNYAEAVRLYSF 36
                5789*******99975 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.3
                HHHHHHHHHHHHHTT-H CS
       TPR_1  1 akalynlGnayfklgky 17
                a  + n+++ ++  +++
  KKY16548.1 58 ALLYANRAQSHMAAQNW 74
                56799*****9988775 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 7.1e-07
                 HHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   8 GnayfklgkydeAleyyekALeln 31 
                 G +++++g+y +A e   kALel+
  KKY16548.1 100 GKCLYEMGRYTDAAEWLTKALELE 123
                 89********************96 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   7.5e-05      0.09       8      29 ..      18      37 ..      18      41 .. 0.87
   2 !    6.4   0.0    0.0075       8.9      11      22 ..     103     114 ..     100     122 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.5e-05
                HHHHHHTT-HHHHHHH..HHHH CS
       TPR_3  8 AaefynkkkyqeArelfsYall 29
                A + + k++y eA+ l+s  ++
  KKY16548.1 18 ASTAHRKGNYAEAVRLYS--FS 37
                677899**********88..87 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0075
                 HHHTT-HHHHHH CS
       TPR_3  11 fynkkkyqeAre 22 
                 +y +++y++A+e
  KKY16548.1 103 LYEMGRYTDAAE 114
                 7*********98 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0023       2.8       6      22 ..      18      34 ..      18      40 .. 0.92
   2 ?   -1.2   0.1       2.2   2.7e+03       2      14 ..      61      73 ..      55      76 .. 0.59
   3 !   11.8   0.1   0.00017       0.2      10      33 ..     104     127 ..     100     146 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0023
       TPR_7  6 arlysrlGdyeeAiely 22
                a++ +r G+y+eA++ly
  KKY16548.1 18 ASTAHRKGNYAEAVRLY 34
                6788899*********9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.2
       TPR_7  2 LlnLarlysrlGd 14
                + n a+ + + ++
  KKY16548.1 61 YANRAQSHMAAQN 73
                4555666665555 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00017
       TPR_7  10 srlGdyeeAielyeqsLaltkdpe 33 
                  ++G+y +A+e ++++L+l+  ++
  KKY16548.1 104 YEMGRYTDAAEWLTKALELEGKEG 127
                 579************999985555 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.045        54       8      24 ..      18      34 ..      18      43 .. 0.84
   2 ?   -1.6   0.1       3.8   4.5e+03       8      19 ..      58      69 ..      56      72 .. 0.56
   3 !   15.2   0.1   1.6e-05     0.019       2      31 ..      94     123 ..      93     126 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.045
                HHHHHHTT-HHHHHHHH CS
       TPR_8  8 gsiylklgdyeeAkeyy 24
                +s+ + +g+y eA+  y
  KKY16548.1 18 ASTAHRKGNYAEAVRLY 34
                678899*******9776 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.8
                HHHHHHTT-HHH CS
       TPR_8  8 gsiylklgdyee 19
                +++y +  + ++
  KKY16548.1 58 ALLYANRAQSHM 69
                566665555554 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 1.6e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleld 31 
                 +a+++ g+++ ++g+y  A e++ kalel+
  KKY16548.1  94 KAWWRGGKCLYEMGRYTDAAEWLTKALELE 123
                 6888889*********************97 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.049        59       4      24 ..      24      44 ..      21      76 .. 0.73
   2 !   14.9   0.1   2.3e-05     0.028       1      34 [.     103     140 ..     103     146 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.049
      TPR_19  4 egdyaeAlalleqalqedpkn 24
                 g+yaeA++l++  ++ +++ 
  KKY16548.1 24 KGNYAEAVRLYSFSIDMANQR 44
                699*******99988776663 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 2.3e-05
      TPR_19   1 llaegdyaeAlalleqalqedpk....naearllLAea 34 
                 l+++g+y++A++ l++al+ + k      ++  lLA+a
  KKY16548.1 103 LYEMGRYTDAAEWLTKALELEGKegeaGKDISGLLADA 140
                 789****************9999444555555566665 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.033        39       6      18 ..      23      35 ..      20      39 .. 0.88
   2 ?   -3.1   0.1       5.4   6.4e+03      28      38 ..      58      68 ..      56      70 .. 0.65
   3 !   14.1   0.0   2.3e-05     0.028       1      23 [.     100     122 ..     100     125 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.033
      TPR_11  6 eqGkyeeAieaYk 18
                 +G+y eA+  Y+
  KKY16548.1 23 RKGNYAEAVRLYS 35
                69*******9996 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.4
      TPR_11 28 aeayynLGlay 38
                a +y n+++ +
  KKY16548.1 58 ALLYANRAQSH 68
                55677777765 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 2.3e-05
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkl 23 
                 G+ +ye G+y++A e++ kAl+l
  KKY16548.1 100 GKCLYEMGRYTDAAEWLTKALEL 122
                 6679******************9 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.025        30      41      57 ..      18      34 ..      14      45 .. 0.68
   2 ?   -2.0   0.1       4.9   5.9e+03      39      43 ..      63      67 ..      54      77 .. 0.49
   3 !   13.4   0.1   7.7e-05     0.092      35      62 ..      94     121 ..      89     129 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.025
      TPR_16 41 gdaalrqgrlaeAaaly 57
                +  a r+g++aeA+ ly
  KKY16548.1 18 ASTAHRKGNYAEAVRLY 34
                66677777777777666 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.9
      TPR_16 39 llgda 43
                +++++
  KKY16548.1 63 NRAQS 67
                23333 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 7.7e-05
      TPR_16  35 eAllllgdaalrqgrlaeAaalyraalr 62 
                  A++  g ++++ gr+++Aa+++ +al+
  KKY16548.1  94 KAWWRGGKCLYEMGRYTDAAEWLTKALE 121
                 699999******************9985 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00027      0.32      10      32 ..      17      39 ..      12      43 .. 0.84
   2 ?    3.9   0.0     0.047        56      26      42 ..     108     126 ..     106     141 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00027
         MIT 10 kAveeDnagnyeeAlelYkeale 32
                +A  + ++gny+eA++lY+ +++
  KKY16548.1 17 TASTAHRKGNYAEAVRLYSFSID 39
                56777789**********98887 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.047
         MIT  26 lYkealelLlqalk.e.kn 42 
                  Y++a e L++al  e k+
  KKY16548.1 108 RYTDAAEWLTKALElEgKE 126
                 599*********9977654 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.1   3.7e+03      70      78 ..      25      33 ..      17      37 .. 0.57
   2 !   11.4   0.3   0.00023      0.28      30      48 ..     100     118 ..      54     119 .. 0.52
   3 !   12.8   0.0     9e-05      0.11      30      52 ..     100     123 ..      89     129 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.1
                T-HHHHHHH CS
      ANAPC3 70 kkyeeAiaa 78
                ++y eA+++
  KKY16548.1 25 GNYAEAVRL 33
                455555544 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00023
                 HHHHHHTT-HHHHHHHHHC CS
      ANAPC3  30 AlclylngqykrAyellrk 48 
                 ++cly++g+y+ A e+l k
  KKY16548.1 100 GKCLYEMGRYTDAAEWLTK 118
                 5566666666666666555 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 9e-05
                 HHHHHHTT-HHHHHHHHHCT.SHH CS
      ANAPC3  30 AlclylngqykrAyellrka.kln 52 
                 ++cly++g+y+ A e+l ka +l+
  KKY16548.1 100 GKCLYEMGRYTDAAEWLTKAlELE 123
                 79****************996665 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.049        59      30      63 ..      12      45 ..       7      48 .. 0.83
   2 !    9.9   0.0   0.00065      0.78       5      64 ..      68     128 ..      65     137 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.049
       TPR_9 30 eerrdRGlllaqlGclsaAladLeaylalapdap 63
                   r+ +   ++ G++++A++     +++a ++p
  KKY16548.1 12 TKMRETASTAHRKGNYAEAVRLYSFSIDMANQRP 45
                6789****************98888888877776 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00065
       TPR_9   5 aireedweralavverllll.aPddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64 
                 ++ +++w + ++ +e+ +     +    ++  G +l+++G++  A++ L  +l+l+++  +
  KKY16548.1  68 HMAAQNWVEGWKDAESSVECkRIQNSKAWWRGGKCLYEMGRYTDAAEWLTKALELEGKEGE 128
                 7777777777777777777743455567888899*******************99986555 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.081        97       8      24 ..      18      34 ..      15      46 .. 0.87
   2 ?   -0.6   0.1       2.8   3.4e+03       4      14 ..      61      71 ..      53      82 .. 0.56
   3 ?    9.5   0.0    0.0017         2       3      35 ..      95     127 ..      93     131 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.081
      TPR_14  8 aeallalGdpdeAiall 24
                a+   + G+++eA++l+
  KKY16548.1 18 ASTAHRKGNYAEAVRLY 34
                6677899********98 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2.8
      TPR_14  4 llalaeallal 14
                ++ +a+ ++a+
  KKY16548.1 61 YANRAQSHMAA 71
                23334444444 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0017
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdda 35 
                 a+++ ++ l++ G++ +A++ l +al+l  ++ 
  KKY16548.1  95 AWWRGGKCLYEMGRYTDAAEWLTKALELEGKEG 127
                 7888888999*****************987765 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.029        35      11      25 ..      20      34 ..      14      35 .. 0.86
   2 ?   -2.0   0.2       3.2   3.8e+03       7      15 ..      56      64 ..      54      73 .. 0.74
   3 ?   10.2   0.0   0.00046      0.55      12      31 ..     103     122 ..     102     125 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.029
      TPR_10 11 alrqrgrydeAeall 25
                + ++ g+y+eA++l+
  KKY16548.1 20 TAHRKGNYAEAVRLY 34
                66889********97 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.2
      TPR_10  7 NLanalrqr 15
                 La ++ +r
  KKY16548.1 56 ELALLYANR 64
                688888887 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00046
      TPR_10  12 lrqrgrydeAealleealai 31 
                 l+++gry++A ++l +al++
  KKY16548.1 103 LYEMGRYTDAAEWLTKALEL 122
                 799**************985 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.099   1.2e+02       9      23 ..      21      34 ..      17      35 .. 0.83
   2 ?   -1.3   0.1       3.9   4.6e+03       7      15 ..      58      66 ..      56      77 .. 0.52
   3 ?    8.4   0.1    0.0031       3.8       2      21 ..      95     114 ..      94     122 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.099
                HHHHHHHHHHHHHHH CS
       TPR_6  9 syrklgdtdkAleal 23
                ++rk+ ++++A++++
  KKY16548.1 21 AHRKG-NYAEAVRLY 34
                67777.*******98 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.9
                HHHHHH.HHH CS
       TPR_6  7 alsyrk.lgd 15
                al+y + + +
  KKY16548.1 58 ALLYANrA-Q 66
                55555423.3 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0031
                 HHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAle 21 
                 A ++ +++++++g++++A e
  KKY16548.1  95 AWWRGGKCLYEMGRYTDAAE 114
                 78999*************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.49
# Mc/sec: 923.59
//
Query:       KKY16549.1  [L=2337]
Description: putative myosin type ii heavy chain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.6e-264  879.3   0.0   1.6e-264  879.3   0.0    2.5  3  Myosin_head    Myosin head (motor domain)
    7.5e-14   50.6 285.0    8.4e-10   37.2 197.8    6.8  3  Myosin_tail_1  Myosin tail
    3.3e-10   39.6   0.1    7.9e-10   38.4   0.1    1.7  1  Myosin_N       Myosin N-terminal SH3-like domain
     0.0037   16.9  25.5     0.0037   16.9  25.5   10.9  8  Filament       Intermediate filament protein
  ------ inclusion threshold ------
      0.027   14.7   0.0      0.027   14.7   0.0    5.5  4  AAA_22         AAA domain
       0.18   11.6   0.9       0.71    9.8   0.9    2.1  1  IQ             IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  879.3   0.0  5.4e-268  1.6e-264       2     677 .]      75     754 ..      74     754 .. 0.95
   2 ?   -9.7   8.5         6   1.8e+04     511     645 ..    1147    1287 ..    1137    1316 .. 0.68
   3 ?   -3.7   0.9      0.84   2.5e+03     276     322 ..    1415    1462 ..    1406    1478 .. 0.71

  Alignments for each domain:
  == domain 1  score: 879.3 bits;  conditional E-value: 5.4e-268
                  SBGCGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGSSSSHHHHHHHHHHHHHHHTSEEEEEEESSTTSSHH CS
  Myosin_head   2 edlveLsllneasvlenlkkRykkdliYtysglvlvavnPykklkiysedvikaykgkkreelpPHifaiadeayrslledkenqsilisGEsGAGKt 99 
                  +d++eL++lneasv++nl++Ry++dliYtysgl+lv+vnPy  l+iy+++ +k+ykg++ree  PHif++adea+r+l+e+ enqsil++GEsGAGKt
   KKY16549.1  75 DDMAELTHLNEASVVHNLHMRYQSDLIYTYSGLFLVTVNPYCPLPIYTNEYVKMYKGQNREETRPHIFSMADEAFRNLVEEGENQSILVTGESGAGKT 172
                  8************************************************************************************************* PP

                  HHHHHHHHHHHHHSSSSSC......TCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEEEEECE-GGGGT---TT--SB CS
  Myosin_head 100 eatKkvlqylasvaeskek......veeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefdakgkiagakietYLLEksRvvkqakeERny 191
                  e+tKkv+qyla+va +++       +++++l+++il +nPilEafGnA+tvrn+nssRFGKfi+ief+ +g+i+ga i +YLLEksRvvk +++ERny
   KKY16549.1 173 ENTKKVIQYLAAVATTDTPsasrspMKHSNLSQQILRANPILEAFGNAQTVRNNNSSRFGKFIRIEFSRAGQITGAFIDWYLLEKSRVVKLNAQERNY 270
                  *************998887889999999********************************************************************** PP

                  HHHHHHHHCSTHHHHHHTT--..TCCGSTTTTTTSSSSBTTS-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHCTSSEEEEC.TTSSE..EES CS
  Myosin_head 192 HiFYqllagaseeekkelkle..dvkdyaylsqsgeltvdgiddseefketkkaldilglseeeqkeifrivaailhlGniefkkea.kdeqa..vle 284
                  HiFYqll+ga++++k++l l+  dv d+ y+ + g+ ++ g++d +e++++ +a++++++s+++q  i++++aailhlGn+++ ke+ + +qa   ++
   KKY16549.1 271 HIFYQLLQGADSRMKDALLLSgmDVGDFGYTRE-GNDSIVGVSDRDEWSSLIEAFHVMNFSDKDQLAILKTIAAILHLGNVTVVKESlRADQAslAPD 367
                  ********************988999*****99.899999*****************************************99877645556622233 PP

                  SHHHHHHHHHHHTS-HHHHHHHHHSEEEEETTEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS..-S-SEEEEEEEEE-B---SSB CS
  Myosin_head 285 deeklekaaellgvdaeelekalvkrriktgkevvskalnveqaevardalakaiyerlFdwlverinkslekkk..eekksfiGvLDiaGFEifekn 380
                  +  +++ka++llg++ e + k l+++r+k+g+e+v k ++ eq++   dal+k iyer F  lv++ink+l++     + +sfiGvLDiaGFEife+n
   KKY16549.1 368 AYPAVDKACQLLGIQPEPFIKGLLHPRVKAGREWVEKVQTPEQVRLGLDALSKGIYERGFGDLVTKINKQLDRGGlsGDDSSFIGVLDIAGFEIFEHN 465
                  3445********************************************************************987557899***************** PP

                  -HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSSGCGS-GGGCCHHHHHHHHS.SSTSHHHHHHHHHTSTTS-HHHHHHHHHHHH.TTSTTEEETT CS
  Myosin_head 381 sFEqlcinyvnEkLqqlFnelvlklEqeeYvrEgiewkfidfgldnqaiidLiek.kplGilslLdeecllpkatdetfleklvkaf.skhakfeksr 476
                  sFEqlciny+nEkLqq+Fn+++++lEqeeY+rE+iew+fidfg d+q++idLie  +p+Gi+s Lde++++pkatd++f+ekl+  +  k++k+++sr
   KKY16549.1 466 SFEQLCINYTNEKLQQFFNHHMFVLEQEEYAREQIEWNFIDFGKDLQPTIDLIELsNPIGIFSCLDEDSVMPKATDKSFTEKLNGLWdRKTPKYRSSR 563
                  ******************************************************889******************************77788**9998 PP

                  STTTTTEEEEEETTCEEEEE-TTHHHHHH----HHHHHHHHTSSSHHHHHHCCSHCHB--.........CSSSECCCCCSBHHHHHHHHHHHHHHHHC CS
  Myosin_head 477 lkkgeakFiikHyAgkveYevegfleKnkDtlnedlvellksskkkllaelfkeeekeakaeakksekkkkkkkkkkkfktvgskfkeslaeLmktle 574
                  l   ++ Fi++HyA +veY++ ++leKnkD+ln++l++ll++s++k +a+lf++ +     +++++ ++++++ kk  f+tv++++ke+l++Lm++l+
   KKY16549.1 564 L---QQGFILTHYAAEVEYSTVDWLEKNKDPLNDNLTRLLSASTEKHIANLFSDCR-----DEQDDFANSRSRVKKGLFRTVAQRHKEQLGSLMNQLH 653
                  6...999***********************************************54.....34455566677888899******************** PP

                  TSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHHSSSEEEEHHHHHHHHGGGSTTSS-SS.SSSHHHHHHHHHHHTTS-GCGEEECSS CS
  Myosin_head 575 stnphfvRCikpnekkkakkldeslvleqlrclGvlegirirraGfpnRitfeefvqrYkllakkelkkllkedakkaveailkeleldkeeykiGkt 672
                  st+phfvRCi+pn+kkk+k+++++lvl+qlrc+Gvlegiri+r GfpnR  f+ef++rY++l+k+   k    + + av++il +l+ld   y++G +
   KKY16549.1 654 STHPHFVRCIIPNHKKKPKQFNANLVLDQLRCNGVLEGIRIARTGFPNRLPFDEFRSRYEVLCKNMP-KG-YLEGQAAVQTILGKLDLDPAVYRVGLS 749
                  ***************************************************************9985.55.478999********************* PP

                  EEEET CS
  Myosin_head 673 KiFfr 677
                  K+Ffr
   KKY16549.1 750 KVFFR 754
                  ****8 PP

  == domain 2  score: -9.7 bits;  conditional E-value: 6
                   HHHHHHHTSSSHHHHHHCCSHCHB--.........CSSSECCCCCSBHHHHHHHHHHHHHHHHCTSEEEEEEEE..-SSSS--TT---HHHHHHHH CS
  Myosin_head  511 dlvellksskkkllaelfkeeekeakaeakksekkkkkkkkkkkfktvgskfkeslaeLmktlestnphfvRCi..kpnekkkakkldeslvleql 604 
                   +  ++l++  k+l +elf+ +++ +++++++++ ++  ++k k +k    +  es  ++ k+l+ ++    R    k+  ++++k l+++l++   
   KKY16549.1 1147 ESRKMLEQQIKDLKEELFQVQSELSRERQSRDDVQMLGEHKLKDMKDKYDTLNESKITIEKELYVQQDTLRRATeaKSAAEQTKKGLQAELIKLRE 1242
                   556677777788888888888887777788888888888888888888888888888888888888888777752245566677778888887777 PP

                   HHTTHHHHHHHHHHSSSEEEEHHHHHHHHGGGSTTSS-SS...... CS
  Myosin_head  605 rclGvlegirirraGfpnRitfeefvqrYkllakkelkkl.....l 645 
                   r + v e+ r+  +   +R + ++  qr ++l ++   k+      
   KKY16549.1 1243 RFMSV-ENARLEAEQIVERNMMKQANQRQEVLQNELNSKSqqldfA 1287
                   77764.8889999999999999999999888887766555344422 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 0.84
                   CTTSSEEESSHHHHHHHHHHHTS-HHHHHHHH.HSEEEEETTEEEEEE CS
  Myosin_head  276 akdeqavledeeklekaaellgvdaeelekal.vkrriktgkevvska 322 
                   +++ + + ++++++eka++ ++++ +e ++ l ++r+++t+ +  + +
   KKY16549.1 1415 QHEVAREHKTSRNAEKASSAMNIQIAEANRNLeTERQMRTQAQANTRK 1462
                   5555556777788999999****9999999984567888875554444 PP

>> Myosin_tail_1  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9  29.5      0.72   2.1e+03       1     114 [.     831     944 ..     831     951 .. 0.88
   2 !   11.0  89.1   2.3e-05     0.069     211     585 ..     950    1329 ..     939    1351 .. 0.81
   3 !   37.2 197.8   2.8e-13   8.4e-10       5    1075 ..    1161    2259 ..    1160    2264 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 0.72
  Myosin_tail_1   1 tRqeeelqakeeeLkkvkekqqkaekelkelekkqqqlleeklaLqeqLqaetelfaeaeemRaRLaarkqeleeilhdleaRleeeeeraqqlqs 96 
                    tR  +e++++ee++++ + k q   +e + le+  ++   e + +q+ L++e  l  + ee+  RL+ar +elee l++     e  e++   l  
     KKY16549.1 831 TRTANEVKKREEQIHQLEAKMQSDLEERRRLEEERRRADVEVQRIQQTLESERSLAFDKEEIFRRLQARETELEEKLTEAIGDQEKLEDQLDDLID 926
                    688888899999988888877777777777888888888899999**********************************99999999********* PP

  Myosin_tail_1  97 ekkkmqqniqdleeqlde 114
                     kkk +++++    ql++
     KKY16549.1 927 AKKKAEDELSLRRTQLEQ 944
                    *****9999988888876 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 2.3e-05
  Myosin_tail_1  211 RklegessdlqeqiadlqaqieelraqlakkeeelqaalarleeeaaqknaalkklreleaqlaelqedlesekaaRak....aekqrrdLgee 300 
                      +le+e +dlqe + +l+ q++ + +  ++++e ++++ + +   ++q +   +kl+ele++l   + dl+   a+ +k    ++kq +dL ee
     KKY16549.1  950 SRLEAEKKDLQEEVDELDGQLDSIEKTHSERDEKVESLAQEVRMLNSQLSLKERKLQELEGKLLKTDQDLDVKLANTTKelniSKKQVKDLLEE 1043
                     58**************************************999999999******************9999887766653333799******** PP

  Myosin_tail_1  301 LealkteLedtLDstaaqqeLrskReqevaeLk...kaleeearsheaqlqelrqkhtqaleelseqleqakrskaslekakqaLesenkelqa 391 
                       +++ ++ +   + +  ++L  ++e+e++ L+   +  e+e++s e++ ++l+ +h     +++ +l++++    ++  +k +Le+e+++ ++
     KKY16549.1 1044 NRSIRQQISELSSTSTGYEDLVRRKESELTILRgdlRRHESEKKSIESEKAHLSTRHD----SIQTRLREVRAEMDAMKSQKTNLEREAADAKK 1133
                     ********9866666677889999*******9966667899**************995....689999999999999999************** PP

  Myosin_tail_1  392 elkslqqakqdseqkrkkleaqlqelqvkl....seserqreelaekvsklqaelesvsslleeaegksiklskdvsslesqlqDtqellqeet 481 
                      l++  ++  +s + rk le+q+++l+  l    se  r+r+ + +     +  l +++   +  ++ +i ++k++   +  l+ + e  +   
     KKY16549.1 1134 LLEAKLAQDVQSGESRKMLEQQIKDLKEELfqvqSELSRERQSRDDVQMLGEHKLKDMKDKYDTLNESKITIEKELYVQQDTLRRATEAKSAAE 1227
                     9998888888888899********9997652212455677777777666678889999999999999999999999999999988888877666 PP

  Myosin_tail_1  482 rqkLalssrlrqleeeknalke.qleeeeeakknvekqlstlqaqlsdlkkkleeeasavealeeakkrlqrelealtqrleekaaaydklekt 574 
                     + k  l + l +l e   ++++ +le e+   +n+ kq ++ q  l   +  l+ +++ ++ +e +k +l+ e++ l++ + e ++   + ++ 
     KKY16549.1 1228 QTKKGLQAELIKLRERFMSVENaRLEAEQIVERNMMKQANQRQEVL---QNELNSKSQQLDFAEAEKAKLANEVQRLKTTMMESENFRIHHDQH 1318
                     6666677777777776666654256767777777777766666655...4689999******************************9999**** PP

  Myosin_tail_1  575 kkRlqqeldDl 585 
                     k+Rl++el  +
     KKY16549.1 1319 KERLERELVTV 1329
                     *******9654 PP

  == domain 3  score: 37.2 bits;  conditional E-value: 2.8e-13
  Myosin_tail_1    5 eelqakeeeLkkvkekqqka....ekelkelekkqqqlleeklaLqeqLqaetelfaeaeemRaRLaarkqeleeilhdleaRlee.eeeraqq 93  
                     eel + ++eL++ +++++ +    e++lk++++k++ l+e k +++++L   ++    a e ++  ++ k+ l   l  l  R    e+ r ++
     KKY16549.1 1161 EELFQVQSELSRERQSRDDVqmlgEHKLKDMKDKYDTLNESKITIEKELYVQQDTLRRATEAKSAAEQTKKGLQAELIKLRERFMSvENARLEA 1254
                     56666666776655544433122289*****************999999888888888888888888888888777777766654314445544 PP

  Myosin_tail_1   94 lqsekkkmqqniqdleeqldee.eaaRqkLql...ekvtleaklkkleedilvledqnnklskekklleeRiaeltsnlaeeeeksks.Lsklk 182 
                      q   ++m ++ ++  e l++e ++  q+L +   ek  l   +++l   ++  e+ + +  + k  le  +  ++++l+  e+  +  L+k++
     KKY16549.1 1255 EQIVERNMMKQANQRQEVLQNElNSKSQQLDFaeaEKAKLANEVQRLKTTMMESENFRIHHDQHKERLERELVTVKGRLTASENDNRAlLNKIQ 1348
                     4443333434444444444444144556665433367777777777776666666666666667778888888888888776666665279999 PP

  Myosin_tail_1  183 nkheavisdledRlkkeektRqelekakR.klegessdlqeqiadlqaqieelraqlakkeeelqaalarleeeaaqknaalkklreleaqlae 275 
                     +k+   i+  + R   + ktR  + ++ R ++e e + l  q++d q  i+ l +q  k    l+++++ +  e ++  +a k+   ++ q+ae
     KKY16549.1 1349 QKN-LDIARSNSRAGENLKTRLTQTQNERtRIEEENKKLSRQLTDAQLSISSLEKQKEKLALSLEDLQHEVAREHKTSRNAEKASSAMNIQIAE 1441
                     987.568999***********9887775549*************************************************************** PP

  Myosin_tail_1  276 lqedlesekaaRakaekqrrdLgeeLealkteLedtLDstaaqq.......e.Lrsk.........ReqevaeLk.......kaleeearshea 345 
                      + +le+e+++R++a+++ r L+  L+  + e+ed        q       e L +          R  ++a+L        ++ +e   + e+
     KKY16549.1 1442 ANRNLETERQMRTQAQANTRKLQASLDQTHREIEDCHKQLILLQkvfnpesEhLPKSwediqpdlaRAVDLASLVealqtdlRTSNEKCARAEN 1535
                     ***********************************86654433211111111121111111122225566666651111222344455556799 PP

  Myosin_tail_1  346 qlqelrqkhtqaleelseqleqakrska.slekakqaLesenkelqaelkslqqakqdseqkrkkleaqlqelqvkls.eserq.reelaekvs 436 
                     ql+e+r++h+  + el+ +   +kr+   +++ ++ +   e++   + l++ ++a +   +    + ++l +++  ++ +s r+ r+   +k  
     KKY16549.1 1536 QLAEMRRRHEDEMIELDAKYSTSKRALLeEIDHNRVS-SPEQRRSPTRLRKTSDAFNHRFS-NNTTPNRLYNVKENVHpDSTRSdRTVDYQKKM 1627
                     **********************999865145555544.45555566777777666444332.33344455555544331444431444455666 PP

  Myosin_tail_1  437 klqaelesvsslleeaegksiklskdvsslesqlqDtqellqeetrqkLalssrlrqleeeknalkeqleeeeeakknvekqlstlqaqlsdlk 530 
                        +ele+++++l+ ++ ++ +l+ +++ ++ + +D   +  +e         r+r+le+e+  l+e+l++ +++  ++e+ ++t +  l d++
     KKY16549.1 1628 DYATELEELQNQLQMTQMQNRHLQNQLERISPN-KD---VYMDESP----SVRRVRKLEQENGRLHEKLDDSAKKISSLERSIRTGEFSLRDVQ 1713
                     7789******************99999998654.44...4455543....4679***************************************9 PP

  Myosin_tail_1  531 kkl.eeeasavealeeakkrlqrelealtqrleekaaaydklektkkRlqqeldDllvdldkqrqlvsnlekkqkkfDqlLaeekaisaklaee 623 
                      k  ee    +++ e ++k l +  ++  ++l + ++++dkl ++k  ++ el D+  dl++  ql  + e   +  +qlL e      +l  e
     KKY16549.1 1714 AKShEELYDLINSQEHSRKSLLQAHNSNVTDLADAKTQFDKLKHAKASVEVELRDVKSDLKE-LQLARDSEAASR--NQLLQEFSDLQIRLDAE 1804
                     77516667899************************************************976.588898888877..69999999998888776 PP

  Myosin_tail_1  624 RdraeaeaReketkalslara.leeakdakeelera.nkalraeledLvsskddvGknvheLerskraleqqveelktq.......leeLeDeL 708 
                       ++        t +lsl ++  +e   + e+ e a  ka rae      +k++      ++   ++ ++  ve+l+ q       +e+L  +L
     KKY16549.1 1805 TSKVV-----DLTSSLSLYKTrADEYFSKLEQAEIAvLKASRAESFAKAQAKEA-EDTCAQIMAERKQMDDLVEDLQRQtqsyeerVEDLAADL 1892
                     66653.....44666666554134444444444433135555555444444433.233344445555555555555554111111166777799 PP

  Myosin_tail_1  709 qatedakLRLevnlqalkaqfeRdlqardeqgeekrrqlvkqvreleaeleeerkqraqavaakkkleldlkeleaqidaankgrdealkqlkk 802 
                     + + +ak RL  +l   ++q   d + ++ + e+ r++ +     l+ +le er    +      +l  +l+el+++ d    +     k   +
     KKY16549.1 1893 DGAVQAKKRLQHELEDYRSQRAMDAEDKELSMEQTRKKYQMEFSKLNGDLEIERENVIHERQENTRLRDELEELRSKWDDEVLNSSTWAKEKAR 1986
                     999******************************************************************************************* PP

  Myosin_tail_1  803 lqaqlkdlqReleearasrdeilaqakesekklksleaellqlqedlaaaerakrqveqerDeladeiasgaskksalldekRrleariaqlee 896 
                     +   l+dl +  +ea ++++++ ++  +   +++sl   +  +q +     + kr +e+   e a+ +++ a + s  + +   +++ + +l+ 
     KKY16549.1 1987 MELTLQDLSKSRDEAATAHNDAQSKIVNLLSQVRSLRTSVDDVQAERDMLIKEKRSMETRLAEAAERLEELARGDSPSMRNAAGMDKEMLDLKS 2080
                     **********************99999999**********99999999999******************************************* PP

  Myosin_tail_1  897 eleeeqsnvellndrlrkatlqveqltaeLsaeRsasqksesarqqlerqnkelkakLqelegavkskykssiaaleakiaqleeqleqesker 990 
                      l +++  +     ++r+a+  + ++++++ aeR +  +    ++ le+q ke +++  +le++  s   + +  l  +i++le +leq    r
     KKY16549.1 2081 KLAQQEDVAVAAVGKMRRAEAMATEMQKDVVAERESNVQLFKEKSALEKQLKETQLRCVDLETKGFSSAGKDVRFLTQRIQELEQKLEQQESTR 2174
                     **999999999999******************************************************************************** PP

  Myosin_tail_1  991 qaaaklvrrtekklkevllqvedeRrnadqykdqvekansrlkqlkrqLeeaeeeasRanaarRklqReLddatesaealnRevs 1075
                     +a a+ vr  ++ +k++  q+    ++ +q  d++ ka+ ++ +l   ++e     s+ + a ++ +ReL +  e+a  l+Re+ 
     KKY16549.1 2175 TAEARSVRNVDRTVKDLESQISRREKQNHQLTDDISKARDKISNLLATIDELQSSDSQNQLAAKRAERELREEREKALRLERELE 2259
                     ******************************************************99999999999******************86 PP

>> Myosin_N  Myosin N-terminal SH3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.1   2.7e-13   7.9e-10       1      38 [.      20      58 ..      20      60 .. 0.94

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 2.7e-13
                SEEEEETTSTTS-EEEEEEEEES.SEEEEEETTSEEEEE CS
    Myosin_N  1 KklVWVpDpkegyvkGeIkeeeG.dkvtVetedGktvtV 38
                K++VW +Dp+ ++v+G+++ee   +++ V+++d+++++V
  KKY16549.1 20 KRYVWLKDPDKAFVRGWVVEELPaGQLLVQCDDDSQREV 58
                9******************77776*************98 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.5  64.0         6   1.8e+04       4     307 ..     842    1153 ..     820    1153 .. 0.72
   2 !    4.9  15.3    0.0054        16      32     140 ..    1137    1244 ..    1132    1246 .. 0.84
   3 ?   -6.8  53.7         6   1.8e+04      21     271 ..    1243    1562 ..    1241    1567 .. 0.78
   4 ?   -2.3  31.5      0.88   2.6e+03      22     248 ..    1399    1656 ..    1399    1668 .. 0.76
   5 !    4.3   0.5    0.0086        26      19      43 ..    1673    1697 ..    1664    1722 .. 0.82
   6 !   16.9  25.5   1.2e-06    0.0037      42     224 ..    1731    1912 ..    1714    1926 .. 0.85
   7 ?    0.5  30.8      0.12   3.7e+02      42     252 ..    1921    2137 ..    1911    2142 .. 0.81
   8 ?   -0.4  33.4      0.24     7e+02      21     239 ..    2041    2265 ..    2035    2274 .. 0.74

  Alignments for each domain:
  == domain 1  score: -5.5 bits;  conditional E-value: 6
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament    4 eelqeLNdrlAsYidkVraLEqenkeLeakieeleekksaevs..klkelyekeleelrkqldeltkerarlqleldnlreeledlrkkyekelnkr 98  
                  e++++L  ++ s ++  r LE+e ++ ++++++ +++ ++e+s   +ke  ++ l+    +l+e  +e    q  l++  ++l d +kk e+el++r
  KKY16549.1  842 EQIHQLEAKMQSDLEERRRLEEERRRADVEVQRIQQTLESERSlaFDKEEIFRRLQARETELEEKLTEAIGDQEKLEDQLDDLIDAKKKAEDELSLR 938 
                  7899999999999999999999999999999999998655554113444444444444444444444443333334444444455689999998888 PP

                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament   99 eevEaelkalrkdldeatlarvdLekkvesLkeelaflkkvh...eeEvkelqkqvs.eqvlvevdaarkldLteilkeiraqyeelaeknreeaee 191 
                  +++    ++    +  +  ++ dL+++v++L  +l+   k h   +e v+ l ++v+  + ++++++ + ++L+  l    ++ +   ++ ++e++ 
  KKY16549.1  939 RTQL---EQAGEIISRLEAEKKDLQEEVDELDGQLDSIEKTHserDEKVESLAQEVRmLNSQLSLKERKLQELEGKLLKTDQDLDVKLANTTKELNI 1032
                  8654...444455666677899999999999999999999983333568888888878888899999999999999999999999999888888864 PP

                  XXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHH CS
    Filament  192 wykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkk...qkasleaqlaeleerleaeleklqeklseleeelaeire...emarql 282 
                    k+++++l e+ ++  +++++  +  t +   + ++e+el  l++    ++s +++++  +++l++ ++++q  l+e+ +e+  +++   +++r+ 
  KKY16549.1 1033 -SKKQVKDLLEENRSIRQQISELSSTSTGYEDLVRRKESELTILRGdlrRHESEKKSIESEKAHLSTRHDSIQTRLREVRAEMDAMKSqktNLEREA 1128
                  .477788877777777777777777777777777777777776665111456666777777788888999999999999988887765111689999 PP

                  HHHHHHHHHHHHHHHHHHHHHHCTT CS
    Filament  283 reYqeLLdvKlaLdiEIatYRkLLE 307 
                   + ++LL+ Kla d+     Rk+LE
  KKY16549.1 1129 ADAKKLLEAKLAQDVQSGESRKMLE 1153
                  99999*****999999999999998 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0054
                  XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament   32 akieeleekksaevsklkelyekeleelrkqldeltkerarlqleldnlr....eeledlrkkyekelnkreevEaelkalrkdldeatlarvdLek 124 
                  ak+++       ++ + +++ e+++++l+++l ++++e +r +  +d+++    ++l+d++ ky++  +++ ++E+el  ++  l  at a++  e+
  KKY16549.1 1137 AKLAQ-----DVQSGESRKMLEQQIKDLKEELFQVQSELSRERQSRDDVQmlgeHKLKDMKDKYDTLNESKITIEKELYVQQDTLRRATEAKSAAEQ 1228
                  33333.....3344556799******************99999999998733324789*************************************** PP

                  XXXXXXXXXXXXXXXX CS
    Filament  125 kvesLkeelaflkkvh 140 
                    + L+ el  l++ +
  KKY16549.1 1229 TKKGLQAELIKLRERF 1244
                  *********9998765 PP

  == domain 3  score: -6.8 bits;  conditional E-value: 6
                  XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXX.................... CS
    Filament   21 raLEqenkeLeakieeleekksaevsklkelyekeleelrkqldeltkerarlqleldnlreel...edlrkkyeke.................... 94  
                  r++  en++Lea+    +++  ++ ++ +e+ ++el++  +qld +++e+a+l  e+++l++++   e++r   ++                     
  KKY16549.1 1243 RFMSVENARLEAEQIVERNM-MKQANQRQEVLQNELNSKSQQLDFAEAEKAKLANEVQRLKTTMmesENFRIHHDQHkerlerelvtvkgrltasen 1338
                  67778999999876655555.55666679999******************9999888777654322256666665556677777************* PP

                  ..................................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXX CS
    Filament   95 ..................................lnkreevEaelkalrkdldeatlarvdLekkvesLkeelaflkkvheeEvkelqkqvs..eqv 155 
                                                    +n+r+ +E+e k+l ++l +a+l+ + Lek+ e+L   l+ l++    E k+ ++  +  + +
  KKY16549.1 1339 dnrallnkiqqknldiarsnsragenlktrltqtQNERTRIEEENKKLSRQLTDAQLSISSLEKQKEKLALSLEDLQHEVAREHKTSRNAEKasSAM 1435
                  ********************************99******************************************999999999988877755667 PP

                  XXXXXX.XXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHH.......HHHHHHHHHHHHHHHHHHHH CS
    Filament  156 lvevda.arkld.....Lteilkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsakeeit.......elrrqiqsleieleslkkqk 239 
                  ++++ + +r+l+      t++ ++ r +  +  ++ ++e+e+ + ++l  lq+  + +se+l ++ e+i+       +l   +++l+++l    +++
  KKY16549.1 1436 NIQIAEaNRNLEterqmRTQAQANTR-KLQASLDQTHREIEDCH-KQLILLQKVFNPESEHLPKSWEDIQpdlaravDLASLVEALQTDLRTSNEKC 1530
                  77764314555533442233333333.34444555555566554.46777889999999999999988875333333566678899*********** PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament  240 asleaqlaeleerleaeleklqeklseleeel 271 
                  a  e+qlae+  r+e e+ +l +k s   ++l
  KKY16549.1 1531 ARAENQLAEMRRRHEDEMIELDAKYSTSKRAL 1562
                  ***************99999888887777665 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 0.88
                  XXXXXXXXXXXXXXXXXXXX......XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...............XXX CS
    Filament   22 aLEqenkeLeakieeleekk......saevsklkelyekeleelrkqldeltkerarlqleldnlreeledlrkkyeke...............lnk 97  
                  +LE+++++L   +e+l+++       s++ +k +++ + +++e+ ++l++  + r+++q++ ++l+++l++ +  +e+                 ++
  KKY16549.1 1399 SLEKQKEKLALSLEDLQHEVarehktSRNAEKASSAMNIQIAEANRNLETERQMRTQAQANTRKLQASLDQTHREIEDChkqlillqkvfnpesEHL 1495
                  589999999999998876532333337778888999999************************************9998889988888888876556 PP

                  XXXXXXXXXXXXXXXXXXXXX...XXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX CS
    Filament   98 reevEaelkalrkdldeatla...rvdL...ekkvesLkeelaflkkvheeEvkelqkqvs...eqvlvevdaar..kldLteilkeiraqyeelae 183 
                   ++ E+   +l + +d a+l    ++dL   ++k+   +++la +++ he+E+ el ++ s     +l e+d++r  +++  +    +r+  ++  +
  KKY16549.1 1496 PKSWEDIQPDLARAVDLASLVealQTDLrtsNEKCARAENQLAEMRRRHEDEMIELDAKYStskRALLEEIDHNRvsSPEQRRSPTRLRKTSDAFNH 1592
                  6666666667778888887753335787333467888899999999999999999999988753333446776541156677777777777777666 PP

                  X..XXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament  184 k..nreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlae 248 
                  +  n++  ++ y+ k e+++  +++++ ++   k+  +++  ++++l+ +l+  + q++ l++ql+ 
  KKY16549.1 1593 RfsNNTTPNRLYNVK-ENVHPDSTRSDRTVDYQKK--MDYATELEELQNQLQMTQMQNRHLQNQLER 1656
                  522455567888888.7788888888888887776..799999999999999999999999999875 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.0086
                  XXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament   19 kVraLEqenkeLeakieeleekksa 43  
                  +Vr+LEqen +L+ k+ +  +k s+
  KKY16549.1 1673 RVRKLEQENGRLHEKLDDSAKKISS 1697
                  8***************999888543 PP

  == domain 6  score: 16.9 bits;  conditional E-value: 1.2e-06
                  XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXX CS
    Filament   42 saevsklkelyekeleelrkqldeltkerarlqleldnlreeledlrkkyekelnkreevEaelkalrkdldeatlarvdLekkvesLkeel.aflk 137 
                  +++  + ++   + l++++ q d+l++++a +++el++++ +l++l+   ++e+++r+++ +e+ +l+  ld++t + vdL + +   k    ++  
  KKY16549.1 1731 RKSLLQAHNSNVTDLADAKTQFDKLKHAKASVEVELRDVKSDLKELQLARDSEAASRNQLLQEFSDLQIRLDAETSKVVDLTSSLSLYKTRAdEYFS 1827
                  344445566667899*********************************************************************9988876536999 PP

                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHH CS
    Filament  138 kvheeEvkelqkqvseqvlvevdaarkld.Lteilkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsakeeitelrrq 224 
                  k+ ++E++ l+++  ++     +a++  d  ++i++e r+q ++l+e+ +++  + y++++e+l    +   +a ++ ++e++++r q
  KKY16549.1 1828 KLEQAEIAVLKASR-AESFAKAQAKEAEDtCAQIMAE-RKQMDDLVEDLQRQT-QSYEERVEDLAADLDGAVQAKKRLQHELEDYRSQ 1912
                  9***********99.5555666666666658999998.99******9988876.78*****************************965 PP

  == domain 7  score: 0.5 bits;  conditional E-value: 0.12
                  XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament   42 saevsklkelyekeleelrkqldeltkerarlqleldnlreeledlrkkyeke.......lnkreevEaelkalrkdldeatlarvdLekkvesLke 131 
                  + + ++ ++ y+ e ++l   l+   ++  + + e  +lr+ele+lr+k ++e       ++++  +E +l++l k  dea  a  d ++k+  L  
  KKY16549.1 1921 ELSMEQTRKKYQMEFSKLNGDLEIERENVIHERQENTRLRDELEELRSKWDDEvlnsstwAKEKARMELTLQDLSKSRDEAATAHNDAQSKIVNLLS 2017
                  556677899999999999999998888888888899999999999999999999999999999********************************** PP

                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHH CS
    Filament  132 elaflkkvheeEvkelqkqvseqvlvevdaarkldLteilkei.raqyeelaeknreeaeew.ykskleelqeaaeknsealrsakeeitelrrqiq 226 
                  +++ l++  ++  +e    ++e++++e+      + +e l+e+ r +  ++ +   ++ e    kskl++ ++ a     ++r+a+   te+++ + 
  KKY16549.1 2018 QVRSLRTSVDDVQAERDMLIKEKRSMETRL---AEAAERLEELaRGDSPSMRNAAGMDKEMLdLKSKLAQQEDVAVAAVGKMRRAEAMATEMQKDVV 2111
                  ******999876666666666888887764...5556667776366777777777777776447999999999999999999999999999998876 PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament  227 sleieleslkkqkasleaqlaeleer 252 
                  + +    +l k+k++le+ql+e++ r
  KKY16549.1 2112 AERESNVQLFKEKSALEKQLKETQLR 2137
                  554444456678999*******9876 PP

  == domain 8  score: -0.4 bits;  conditional E-value: 0.24
                  XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament   21 raLEqenkeLeakieeleekksaevsklkelyekeleelrkqldeltkerarlqleldnlreeledlrkkyekelnkreevEaelkalrkdldeatl 117 
                  r++E+  +e   ++eel    s+ + ++ +   ke+ +l+++l +++     ++  ++++++ + +++k +  e ++  ++ +e  al k+l+e++l
  KKY16549.1 2041 RSMETRLAEAAERLEELARGDSP-SMRNAAGMDKEMLDLKSKLAQQEDVAVAAVGKMRRAEAMATEMQKDVVAERESNVQLFKEKSALEKQLKETQL 2136
                  34444444444444444444333.33455666777778888887777777777777777777777777777777777778888888888******** PP

                  XXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXX CS
    Filament  118 arvdLekk.vesLkeelaflkkvheeEvkelqkqvseqvlvevdaarkld.....Lteilkeiraqyeelaeknreeaee..wykskleelqeaaek 206 
                  + vdLe+k   s  ++++fl +  + E+++  +q +++++ e  ++r++d     L++ ++   +q  +l ++  +  ++  +  + ++elq++ ++
  KKY16549.1 2137 RCVDLETKgFSSAGKDVRFLTQRIQ-ELEQKLEQQESTRTAEARSVRNVDrtvkdLESQISRREKQNHQLTDDISKARDKisNLLATIDELQSSDSQ 2232
                  ******99678999******99876.5666666666999*****999999988888888877666666665554444443114457899******** PP

                  XXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament  207 nsealrsakeeitelrrqiqsleieleslkkqk 239 
                  n+ a+++a++e+ e r +  +le ele  k+++
  KKY16549.1 2233 NQLAAKRAERELREEREKALRLERELEGWKGMR 2265
                  ***************************999886 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0     9e-06     0.027       4      76 ..     157     229 ..     153     285 .. 0.80
   2 ?   -2.2   0.2       1.5   4.6e+03      52      82 ..    1410    1456 ..    1365    1494 .. 0.48
   3 ?    0.7   0.3       0.2   5.8e+02      28      76 ..    1536    1581 ..    1520    1596 .. 0.72
   4 ?    1.6   1.2       0.1   3.1e+02      39     109 ..    2170    2235 ..    2144    2249 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsse 76 
                 + ++++vtGesG+GKT   +++ + l ++a  ++++++   ++ ++++ +   ++ +l+a+g+ +  ++++s+
  KKY16549.1 157 ENQSILVTGESGAGKTENTKKVIQYLAAVATTDTPSASRSPMKHSNLSQQILRANPILEAFGNAQTVRNNNSS 229
                 5789*********************988888877666666676666666556688888888876655444444 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.5
      AAA_22   52 sskdllrellralglelka................erlsseelleal 82  
                  s++dl +e++r+ + +++a                +  ++++++++ 
  KKY16549.1 1410 SLEDLQHEVAREHKTSRNAekassamniqiaeanrNLETERQMRTQA 1456
                  33333333333333333334455555555554444333333333333 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.2
      AAA_22   28 qldeeakaee....erpevvfvtlpsstsskdllrellralglelkaerlsse 76  
                  ql     a e    +++e ++ +++ sts + ll+e+ ++  ++ +  r s  
  KKY16549.1 1536 QL-----A-EmrrrHEDEMIELDAKYSTSKRALLEEIDHNRVSSPEQ-RRSPT 1581
                  22.....2.1355799*********************9988777776.33333 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.1
      AAA_22   39 rpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrseeal 109 
                  + ++ + ++ s  + +   ++l +++ +    +++++++l + + +a ++ +   l  iDE q  +s+++l
  KKY16549.1 2170 QESTRTAEARSVRNVDRTVKDLESQISR----REKQNHQLTDDISKARDKISN-LLATIDELQSSDSQNQL 2235
                  4444455555555555556666666664....456799999999999999999.999******96555544 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.9   0.00024      0.71       2      18 ..     771     787 ..     770     790 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00024
                 HHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRk 18 
                 ++++++Q++ RGy++R+
  KKY16549.1 771 EIMVRFQSVARGYVQRR 787
                 6799************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2864  (0.159741); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                       222  (0.0123822); expected 17.9 (0.001)
Passed Fwd filter:                       108  (0.00602376); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 5.57u 0.42s 00:00:05.99 Elapsed: 00:00:01.16
# Mc/sec: 6118.47
//
Query:       KKY16550.1  [L=219]
Description: hypothetical protein UCRPC4_g05887 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.11   12.2  11.7       0.16   11.7  11.7    1.2  1  Cwf_Cwc_15      Cwf15/Cwc15 cell cycle control protein
       0.31   11.5   0.4       0.31   11.5   0.4    3.1  2  TonB_N          TonB polyproline region
       0.39    9.4   5.4       0.42    9.4   5.4    1.0  1  SAPS            SIT4 phosphatase-associated protein
       0.71   10.6  10.7        1.2    9.8  10.7    1.5  1  FYDLN_acid      Protein of unknown function (FYDLN_acid)
       0.74    9.2   4.4       0.96    8.8   4.4    1.1  1  Plasmodium_Vir  Plasmodium vivax Vir protein
       0.83    8.9   9.3        1.1    8.5   9.3    1.1  1  NOA36           NOA36 protein
        0.9    7.3   6.2          1    7.1   6.2    1.1  1  DUF5521         Family of unknown function (DUF5521)
       0.96    8.7   7.6        1.4    8.1   7.6    1.3  1  Med13_C         Mediator complex subunit 13 C-terminal domain
        3.3    6.4   5.2        3.8    6.2   5.2    1.1  1  Presenilin      Presenilin
        3.7    5.6  17.2        4.2    5.4  17.2    1.2  1  FSA_C           Fragile site-associated protein C-terminus
        7.5    6.5  14.2        3.8    7.5  11.3    2.0  2  Trypan_PARP     Procyclic acidic repetitive protein (PARP)
         10    4.8   6.1         11    4.6   6.1    1.1  1  NPR3            Nitrogen Permease regulator of amino acid tra


Domain annotation for each model (and alignments):
>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  11.7   0.00011      0.16      69     146 ..      81     153 ..      53     161 .. 0.42

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                 HH-------------------------------------..------------------------------------- CS
  Cwf_Cwc_15  69 krkkaeleaeeeeekekkeeeeeeeeeeakrrkeelleeareidaddedseeeeeeeeeesdddsdsdsdddddedet 146
                 k   ++++a++  ++++++++ ++++++a ++++++ ++++++d+   + ++++++++++ ++d++sd+d++d+ d+ 
  KKY16550.1  81 K---RASNATT--AAAAASTAAANATSAAANTTSAAANTTAAADNTTTAATDNTSSDDADANSDDSSDDDSNDNSDDS 153
                 1...1111111..22222222222223333333334444445555555444444444433333444444444444444 PP

>> TonB_N  TonB polyproline region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.9   5.9e+03       6      24 ..      23      41 ..      20      48 .. 0.80
   2 ?   11.5   0.4   0.00021      0.31      66      80 ..     171     185 ..     162     193 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.9
                XXXXXX.XXXXXXXXXXXX CS
      TonB_N  6 lPkaeqkpisvtmvapael 24
                +P +  + +s+ mva a  
  KKY16550.1 23 MPTTGSTGLSLFMVASAVS 41
                7888888999999998865 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00021
                 X..XXXXXXXXXXXX CS
      TonB_N  66 kPePkPkPkPkpvkk 80 
                  PeP PkP Pkp++ 
  KKY16550.1 171 DPEPAPKPEPKPEQI 185
                 578888888888874 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.4   0.00028      0.42     272     333 ..      78     154 ..      38     199 .. 0.47

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00028
        SAPS 272 s................deaskeesaesedltdkdedvsleesksakdenkesdesesdtaeesseededdasseesa 333
                 +                + a+ + +++++++t++ ++++ ++++++++ +++ ++ ++d ++++s++d+++++s +sa
  KKY16550.1  78 GvekrasnattaaaaasT-AAANATSAAANTTSAAANTTAAADNTTTAATDNTSSDDADANSDDSSDDDSNDNSDDSA 154
                 133333333334333321.22222222222222222222222222222233333333333333333333333333332 PP

>> FYDLN_acid  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  10.7   0.00082       1.2      42      96 ..      98     152 ..      63     162 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00082
  FYDLN_acid  42 lksraaaaeaeeakkkkeeeedeedeeeeedvsdedadeeeeedddddvdleedd 96 
                 +++ +aaa++ +a+ ++++++d+++++++++ s +dad++++++ ddd++ ++dd
  KKY16550.1  98 ANATSAAANTTSAAANTTAAADNTTTAATDNTSSDDADANSDDSSDDDSNDNSDD 152
                 2333333334444444555555555566666666777777665444433222222 PP

>> Plasmodium_Vir  Plasmodium vivax Vir protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.4   0.00064      0.96     245     307 ..      87     165 ..      44     168 .. 0.44

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00064
  Plasmodium_Vir 245 gseslssekpearkgve................eqlvhaltsassgtgndaspesiansssslesvseelssnfirnii 307
                     + ++   ++++a+++ +                + +  a++++ss++ +++s++s +++s++  ++s +++  + ++ii
      KKY16550.1  87 TTAAAAASTAAANATSAaanttsaaanttaaadNTTTAATDNTSSDDADANSDDSSDDDSNDNSDDSAISITETATTII 165
                     1111111111111111133344444312112224444444555555555555555555555555555555555555444 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   9.3   0.00076       1.1     241     299 ..      92     152 ..      56     160 .. 0.47

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00076
       NOA36 241 adgsddddddeedsdydaylkalasgddeddegdedd..dddddeedddeeeddedeeeee 299
                 a+++  ++  +++++ ++  +++++++d++ ++++d+   dd d+++dd+ +dd+++++++
  KKY16550.1  92 AASTAAANATSAAANTTSAAANTTAAADNTTTAATDNtsSDDADANSDDSSDDDSNDNSDD 152
                 3333333333334444443444433344444444444003444444444444444444333 PP

>> DUF5521  Family of unknown function (DUF5521)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   6.2   0.00068         1     565     666 ..     104     204 ..      67     216 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00068
     DUF5521 565 satesasasetlrnankpstsqaarkesqsqerdskrhdddrsssslqtasaslslskkkrilqgpsaklvavpqpeasaqtkgnkldlpsifqrrest 663
                  a  +++a++t   a++++t  + ++ s+  + +s  ++dd s+ +++ +++s++ ++ + i+ g  a++ + p+pe   +   +       f +re +
  KKY16550.1 104 AANTTSAAANTTAAADNTTTAATDNTSSDDADANSDDSSDDDSNDNSDDSAISITETA-TTIIFGRDADPEPAPKPEPKPEQITQSKGFNGGFLKRERR 201
                 3344455667777788877777777777777777777777777667776666666554.5677788888777777765543333333333344444444 PP

     DUF5521 664 sas 666
                 sa+
  KKY16550.1 202 SAN 204
                 433 PP

>> Med13_C  Mediator complex subunit 13 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   7.6   0.00092       1.4     164     226 ..      90     154 ..      67     207 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00092
     Med13_C 164 stplstPqdsscthilvfptsattqstpttfasedanaedt...pedsseeddsdallvdltdetw 226
                  + +s   ++++t+ +  +tsa++++t ++ ++++a+++ t   ++d+  +d+sd   +d++d++ 
  KKY16550.1  90 AAAAS-TAAANATSAAANTTSAAANTTAAADNTTTAATDNTssdDADANSDDSSDDDSNDNSDDSA 154
                 22222.244444555555555544333333333333333322223333333344444444444333 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   5.2    0.0025       3.8     246     306 ..      88     148 ..      51     195 .. 0.42

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0025
  Presenilin 246 eeasesskeeeseeesseksaqsseseeeseeesseaessaeesseekeseessesseeee 306
                 ++a+ +s+++++ ++++ ++++++++++ + +++++a++++++s++ ++++ +s+ +++++
  KKY16550.1  88 TAAAAASTAAANATSAAANTTSAAANTTAAADNTTTAATDNTSSDDADANSDDSSDDDSND 148
                 1111111111111111111111111111111111111111111111111111111111111 PP

>> FSA_C  Fragile site-associated protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  17.2    0.0028       4.2     540     616 ..      65     140 ..      13     153 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0028
       FSA_C 540 ltpklmsaakssleslqgsqdsiaiattasavelndatsstiasaatasslsstkstvtivvstndskdgaklgpdt 616
                  + + +s  ++sl   + + ++++ a++as++ +n +++++ +++a+a ++++++ t+t ++  n s d a   +d 
  KKY16550.1  65 AALEALSENAQSLGVEKRASNATTAAAAASTAAANATSAAANTTSAAANTTAAADNTTTAATD-NTSSDDADANSDD 140
                 344556666777776666677777777788888888888888888888888777777776665.5566666555443 PP

>> Trypan_PARP  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.6   3.9e+03       5      31 ..      32      57 ..      30      64 .. 0.70
   2 ?    7.5  11.3    0.0025       3.8      26     104 ..     103     183 ..      85     192 .. 0.50

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.6
  Trypan_PARP  5 slyllaillfsanlfagvgfaaaaegp 31
                 sl+++a  + +an + g gfa    +p
   KKY16550.1 32 SLFMVASAVSAANAW-GQGFAVYKREP 57
                 677777777777765.78888766655 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0025
  Trypan_PARP  26 aaaegpedkgltkggkgkekgtkvsdddtngtdpepepepepepepepepepep....etepeeepepepepepepepepepe 104
                  aaa+ +   + t      ++ t  + d+t++ d++ + ++  + + + +++       et        +++pep p+pep+pe
   KKY16550.1 103 AAANTTSAAANTT--AAADNTTTAATDNTSSDDADANSDDSSDDDSNDNSDDSAisitETATTIIFGRDADPEPAPKPEPKPE 183
                  2222222222222..22245666777777777888877777776666666655533223333333334444444444444443 PP

>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   6.1    0.0077        11      56     121 ..      82     149 ..      56     184 .. 0.48

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0077
        NPR3  56 rkrssrskekkskesskksesssksesse.ekksskeseeseekesneeeeeeededdeesek.eeee 121
                 r ++ ++ ++  ++ +++ +s  ++++s+ ++++  +++++++++ n+++++++ ++d++s++ ++++
  KKY16550.1  82 RASNATTAAAAASTAAANATSAAANTTSAaANTTAAADNTTTAATDNTSSDDADANSDDSSDDdSNDN 149
                 33333222222222222222222222111011111112222222222222222222222222112222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1849  (0.103129); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                       151  (0.00842211); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.53
# Mc/sec: 1247.96
//
Query:       KKY16551.1  [L=132]
Description: hypothetical protein UCRPC4_g05888 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.047   12.4   0.1      0.058   12.2   0.1    1.1  1  DUF740    Protein of unknown function (DUF740)
       0.07   13.5   0.4        8.3    6.9   0.1    2.1  2  ANAPC15   Anaphase-promoting complex subunit 15


Domain annotation for each model (and alignments):
>> DUF740  Protein of unknown function (DUF740)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   6.4e-06     0.058     332     374 ..      32      72 ..      13      83 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.4e-06
      DUF740 332 tiprlppmlsvvEdapvdvversDgqipveeai.nedesvpGGs 374
                 ++ r+p+m ++vEda   +++ sD+qi  e++  + d +  GG 
  KKY16551.1  32 AMKRFPSMRAIVEDAS--TIQTSDMQID-EDDLpDGDGKGHGGE 72 
                 457************9..789*******.555404444445554 PP

>> ANAPC15  Anaphase-promoting complex subunit 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0037        33       3      29 ..      35      61 ..      33      63 .. 0.91
   2 ?    6.9   0.1   0.00093       8.3       8      36 ..      93     121 ..      91     126 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0037
     ANAPC15  3 lFPsllprvtdplwfnldrpcddEteL 29
                 FPs+   v d +++++++ + dE  L
  KKY16551.1 35 RFPSMRAIVEDASTIQTSDMQIDEDDL 61
                6********************999877 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00093
     ANAPC15   8 lprvtdplwfnldrpcddEteLaqlEqeh 36 
                 + ++ d++ f + ++ d+  eL + Eq+ 
  KKY16551.1  93 VKNIYDESVFTVGESSDEGKELDETEQDI 121
                 6688999*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1028.68
//
Query:       KKY16552.1  [L=501]
Description: putative serine threonine protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-49  168.1   0.0    3.8e-49  167.4   0.0    1.2  1  Pkinase      Protein kinase domain
    9.1e-28   97.2   0.0    1.3e-27   96.7   0.0    1.2  1  Pkinase_Tyr  Protein tyrosine kinase
      0.005   16.2   0.0     0.0097   15.3   0.0    1.4  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.017   14.5   0.0       0.03   13.6   0.0    1.5  1  Kinase-like  Kinase-like
      0.052   13.4   0.9          2    8.3   0.0    2.9  3  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.4   0.0   1.1e-52   3.8e-49       5     263 ..     220     487 ..     217     487 .. 0.85

  Alignments for each domain:
  == domain 1  score: 167.4 bits;  conditional E-value: 1.1e-52
                 EEEEEESSEEEEEEEETT.....TTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHHHHSS- CS
     Pkinase   5 eklGeGsfGkVykaveke.....tgkivAvKkikkekakkkke..kkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladllerkgsl 95 
                 e +G+G+fG V   ++++      ++ +AvK+++++ ++  k+  k++++E  i  +l+hpn+++ ++ +++ k +++ v+ey+ gg+l +l+ + g+l
  KKY16552.1 220 EIVGRGAFGIVRISHKADpndsrMEQLYAVKEFRRRPQETAKKyqKRLTSEFCISSSLRHPNVIHTLDLLQDaKGDYCEVMEYCAGGDLYTLILAAGTL 318
                 789********8776654111115689*******99998888888**************************96778889******************** PP

                 -HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.....BCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHH CS
     Pkinase  96 seeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.....ltsfvgtseYlAPEvlkeney.skkvDvWslGvily 188
                 + +ea  ++kq+++g+ey+H++g+ HrDlKpeN+L+ ++g lKitDFG  + ++   +     +   +g+  Y+APE  ++ e+  ++vDvW+ Gvi +
  KKY16552.1 319 QVAEADCYFKQLMRGVEYMHEMGVAHRDLKPENLLLTTHGALKITDFGNGECFRMAWEkeahmTAGLCGSAPYIAPEEYQGGEFdPRAVDVWATGVIYM 417
                 ************************************************9987776555567878889************999997889*********** PP

                 HHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT...SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGG CS
     Pkinase 189 elltgkppfsgekgkekvekeldqlekilkilg...etkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpy 263
                  + tg+++++  k++e      d++   ++ l+   +++   p ++     +++++ ++l+ +p++R+ta+++l++++
  KKY16552.1 418 AMRTGRHLWRLAKKDE------DEF--YARYLEgrrDEDGYAPIETLHRARCRNVIYSILDPNPSRRITASQILKSEW 487
                 **********555444......331..122222233545555666666999************************998 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.0   3.8e-31   1.3e-27       4     256 ..     219     483 ..     217     485 .. 0.81

  Alignments for each domain:
  == domain 1  score: 96.7 bits;  conditional E-value: 3.8e-31
                  EEEEEEESSEEEEEEEEET.TTTSSEEEEEEEEES...TTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHTC CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkg.ekekkevkVavKtlk...eeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkke 96 
                  ++ +G+GafG V   +  + ++++ e+  avK ++   +e+ ++ +++l++e  i ++l+hpn+++ l +    ++ ++ v+ey++gGdL + + +  
   KKY16552.1 219 QEIVGRGAFGIVRISHKADpNDSRMEQLYAVKEFRrrpQETAKKYQKRLTSEFCISSSLRHPNVIHTLDLLQdAKGDYCEVMEYCAGGDLYTLILAA- 315
                  6889********98877666899999999****962223455555999************************777889***************9998. PP

                  TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET..TTSSEEEETTSSTSGGGGS-HHHHHHSEEE.HHHHHHHH CS
  Pkinase_Tyr  97 kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi..ekddeyvkkeeaklpvkWmapEslkekkft.sksDvWsf 191
                    +l++ +  ++  q+ +G+ey++++ + Hrdl   N Ll+++   ki+DfG  +      ++e +++ +   +  ++apE  + ++f   + DvW+ 
   KKY16552.1 316 -GTLQVAEADCYFKQLMRGVEYMHEMGVAHRDLKPENLLLTTHGALKITDFGNGECFrmAWEKEAHMTAGLCGSAPYIAPEEYQGGEFDpRAVDVWAT 412
                  .9*************************************************976655214556667788888999*************83467***** PP

                  HHHHHHHHTTSSGTTTTS..HHHHHHHHHHTTEE.....S-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 192 GvllwEiftlgespypgl..kneevleklkegkr.....lekpekcpeelyelmkkcweedpeeRptfselv 256
                  Gv+ + + t g++ ++    ++ e+++++ eg+r      +  +   ++  +++ + ++ +p++R t s+++
   KKY16552.1 413 GVIYMAMRT-GRHLWRLAkkDEDEFYARYLEGRRdedgyAPIETLHRARCRNVIYSILDPNPSRRITASQIL 483
                  **9998887.77665433226777888887777734433334444556677888888888888888888876 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.7e-06    0.0097     122     163 ..     325     362 ..     306     377 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.7e-06
         Kdo 122 allkavgrliaklhragvnHadlyaknillqqeeeeeaeiwl 163
                   +k++ r ++ +h++gv H+dl + n+ll +++     + +
  KKY16552.1 325 CYFKQLMRGVEYMHEMGVAHRDLKPENLLLTTHG----ALKI 362
                 5678888999*********************998....4444 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   8.4e-06      0.03     152     189 ..     329     366 ..     282     417 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.4e-06
  Kinase-like 152 qlirlaanLqakglvhgkftvdnllldekgglmlggft 189
                  ql+r + ++++ g+ h +++++nlll  +g l++++f+
   KKY16552.1 329 QLMRGVEYMHEMGVAHRDLKPENLLLTTHGALKITDFG 366
                  89999*******************************97 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.037   1.3e+02      55      91 ..     280     323 ..     239     341 .. 0.70
   2 ?    8.3   0.0   0.00056         2     164     187 ..     338     360 ..     318     368 .. 0.74
   3 ?   -0.3   0.1      0.23   8.4e+02     206     237 ..     422     453 ..     403     456 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.037
                 -B-CT.TBS-EEETTEEEEEEE----EE-SS......HHHHHHH CS
         APH  55 Pevla.gdtddeeigllfalieyvpgrsllr......klsaaql 91 
                 P v++ +d  ++ +g + +++ey+ g +l++      +l+ a++
  KKY16552.1 280 PNVIHtLDLLQDAKGDYCEVMEYCAGGDLYTlilaagTLQVAEA 323
                 5666526689999999************9996655555555555 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00056
                 S-EEEE-SS-SGGGEEEC..TTEE CS
         APH 164 lptvllHgDlhpgNllvdpddgrv 187
                  ++++ H+Dl+p Nll++ ++g +
  KKY16552.1 338 HEMGVAHRDLKPENLLLT-THGAL 360
                 578899************.55554 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.23
                 HCCHHHCSCHCCCHCHHHHHHHHCS-HHHHCC CS
         APH 206 avllrswtseldpeflaallrayeqeaglarl 237
                 + +l+++  +  +ef+a++l++  +e+g+a +
  KKY16552.1 422 GRHLWRLAKKDEDEFYARYLEGRRDEDGYAPI 453
                 566777788889**********9888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.49
# Mc/sec: 3068.04
//
Query:       KKY16553.1  [L=352]
Description: putative glycosyltransferase family 25 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0014   18.5   0.0      0.013   15.4   0.0    2.0  1  Glyco_transf_25  Glycosyltransferase family 25 (LPS biosynthe


Domain annotation for each model (and alignments):
>> Glyco_transf_25  Glycosyltransferase family 25 (LPS biosynthesis protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.1e-07     0.013      71     133 ..     118     197 ..     112     269 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.1e-07
  Glyco_transf_25  71 ylSHyllWekcvelnleyiiIlEDDvilseefkealedllkeik.................eleflrlgelkktrfeekd 133
                      +lSH+ +  ++ +  ++ ++IlEDD+ ++ +   +l ++ k ++                   ++++lg +  + +++ d
       KKY16553.1 118 MLSHVEVLREIRSSGVSTALILEDDIDFDLRIRPSLANIAKAVSnysnpgsqydiahpwgtGWDIVWLGYCCGYPWDNID 197
                      79*****************************9999999999877555555555555555444455555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2274.82
//
Query:       KKY16554.1  [L=352]
Description: putative bar adaptor protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-53  181.9   1.9    2.2e-53  181.4   1.9    1.2  1  BAR       BAR domain
  ------ inclusion threshold ------
      0.032   13.8   1.2      0.086   12.5   0.0    2.0  2  DUF4085   Protein of unknown function (DUF4085)
       0.09   13.5   3.1      0.093   13.5   0.0    2.7  4  CP12      CP12 domain


Domain annotation for each model (and alignments):
>> BAR  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.4   1.9   3.6e-57   2.2e-53      33     238 ..      86     278 ..      72     279 .. 0.98

  Alignments for each domain:
  == domain 1  score: 181.4 bits;  conditional E-value: 3.6e-57
         BAR  33 rrldvteklieklvkelkeylqanpgarakqivleklkeqplelLaesmieagkelgedssfgkalekygeavkkl.aqteeelekrvetnfldplrel 130
                 rr++++e++  +l+ke+k+yl+++++++a+q+            +ae++  ++ + g +++   ++ +y++av++l a+t + l+++++t++l+p+ ++
  KKY16554.1  86 RRFRTMESAANRLQKESKGYLDSLRAMTASQM-----------RIAETIDAFYGDAGTRDG---VSRSYKQAVEDLdAETIKALDGPYRTTVLEPISRF 170
                 8*******************************...........******************...9***********99********************* PP

         BAR 131 lekefkeiqkerkklehkrlDyDaakarlkklktkkskkakdeekaeeelrkAqqkfeesneelkaeLpnllalevefv.nqlqafveaqldfhkqaaq 228
                 + ++f++i++++kk++hk+lDyDa +a++kkl +k +k++++ ++ae+e ++A+q++e +ne+l +eLp+l++l+v+++ ++++a+v++ql+f+++a++
  KKY16554.1 171 C-AYFPDINECIKKRNHKLLDYDAMRAKVKKLVEKPDKDVTKLPRAEKEAEMAKQAYESLNEQLFTELPQLIDLRVPYLdPSFEALVKIQLRFCAEAYS 268
                 *.***************************************99******************************************************** PP

         BAR 229 lleqlqqqls 238
                 +++q+qq+l+
  KKY16554.1 269 RMAQVQQYLD 278
                 *******997 PP

>> DUF4085  Protein of unknown function (DUF4085)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.14   8.6e+02      78     114 ..     197     235 ..     183     245 .. 0.49
   2 ?   12.5   0.0   1.4e-05     0.086      99     171 ..     264     334 ..     257     339 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.14
     DUF4085  78 evkkevdkwsreyek..rfeqvldsyveyfnsiakklpe 114
                 +vkk+v+k  +++ k  r e+  + +++ ++s +++l  
  KKY16554.1 197 KVKKLVEKPDKDVTKlpRAEKEAEMAKQAYESLNEQLFT 235
                 444444444444443333444444444444444443333 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.4e-05
     DUF4085  99 dsyveyfnsiakklpenvkelfkkslHDavikkieresedlvl.eldcsggfseidkveiTfkdvaklepenle 171
                  +++  + ++++ l ++  e + +   Da+++++ +e  dl++  l  ++g ++i++  + f+ +++ e   l+
  KKY16554.1 264 AEAYSRMAQVQQYLDADTREQYAEGQLDARVEEVLQEIRDLSIaALKKESGCKNINE--LFFTTITIFE-LRLQ 334
                 57788999********************************988469***********..5555555554.3344 PP

>> CP12  CP12 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.6e-05     0.093      18      66 ..     129     180 ..     114     182 .. 0.86
   2 ?   -3.7   0.1         3   1.8e+04       9      18 ..     216     225 ..     210     231 .. 0.52
   3 ?   -1.5   0.2      0.74   4.4e+03      23      34 ..     291     302 ..     263     320 .. 0.57
   4 ?   -3.6   0.1         3   1.8e+04      47      59 ..     336     348 ..     332     349 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TTCHH...HHHHHSTTSTTT CS
        CP12  18 ekgansaecaaawdeVeeLqaeaahqrakkkektsLe...eYCeenPeaaEc 66 
                 + g++++  + + ++Ve+L ae  ++ +   ++t Le   ++C  +P+  Ec
  KKY16554.1 129 DAGTRDGVSRSYKQAVEDLDAETIKALDGPYRTTVLEpisRFCAYFPDINEC 180
                 46888899999**************999766789999888***********9 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3
                 XXXXXXXXXX CS
        CP12   9 ieearevcae 18 
                  +ea+ +++ 
  KKY16554.1 216 EKEAEMAKQA 225
                 3444444433 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.74
                 XXXXXXXXXXXX CS
        CP12  23 saecaaawdeVe 34 
                 +a + ++ +e+ 
  KKY16554.1 291 DARVEEVLQEIR 302
                 333333333333 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 3
                 XX-TTCHHHHHHH CS
        CP12  47 kkektsLeeYCee 59 
                 +k+k ++e+Y ++
  KKY16554.1 336 NKAKPPMEKYKNK 348
                 4567777877555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2308.92
//
Query:       KKY16555.1  [L=454]
Description: putative dihydroorotate reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-64  216.4   0.1      6e-51  173.4   0.0    2.1  2  DHO_dh    Dihydroorotate dehydrogenase
     0.0084   15.6   0.5       0.52    9.7   0.0    2.3  2  PcrB      PcrB family
  ------ inclusion threshold ------
      0.015   14.4   0.0       0.35    9.8   0.0    2.5  3  FMN_dh    FMN-dependent dehydrogenase


Domain annotation for each model (and alignments):
>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.4   0.0     1e-54     6e-51       2     241 ..      59     343 ..      58     349 .. 0.90
   2 !   40.9   0.3   2.3e-14   1.3e-10     246     293 ..     398     445 ..     389     447 .. 0.93

  Alignments for each domain:
  == domain 1  score: 173.4 bits;  conditional E-value: 1e-54
                 G-EEETTEEESSSEEE-TTSSTTSSSHHHHHCTTSSEEEEEEE-SS-B--S-S--EEEETTCTEEEE---S-BS-HHHHHHHHHHHHHHHHCC...... CS
      DHO_dh   2 latkvlglkfknpiglAaGfdkegeeilkllklgfgaieigsvtpkpqeGnpkPrvfrlkedrsvlNslGlnneGldavlekllkrrkeqeek...... 94 
                 la +v+g+++ npi  + G+dk+++  + l +lg +++e+g +tp+pqeGnpkPrvfr++++++++N++Gln++G+d+++  l+ r++e++++      
  KKY16555.1  59 LAISVFGHTLVNPIATSGGLDKDADIPNPLFALGPAIVEVGGTTPRPQEGNPKPRVFRIPSQNAIINRYGLNSKGADHMATILRFRVREYAKSlglgfd 157
                 67899*************************************************************************************998****** PP

                 .......................CEEEEEEE-TTS.....S.HHHHHHHHHHHHGGGESEEEEES-SCTCCTSCCCGCHHHHHHHHHHHHHHHH..... CS
      DHO_dh  95 ......................kelginlskakkt.....enavddyvevvrkigpfadilelNvSsPntpglrdlqekeelkaillkvvkevs..... 161
                                         l++ ++k+k+t     e + +dyv++v++++++adil++NvSsPntpglr+lq+   l++il +vv ++      
  KKY16555.1 158 aeaeqrvldgetgvppgsltpgRLLAVQVAKNKTTpesdvEAVKADYVYCVERLAKYADILVVNVSSPNTPGLRSLQATGPLTEILKSVVGAARkadrk 256
                 **********************88999999999998766555678*********************************************999889999 PP

                 .SSEEEEEE-SSSSHHHHHHHHHHHH.HHTECEEEE...BSEE--.....CTTCCGCCCCTTSSEEEEEGGGHHHHHHHHHHHHHHT CS
      DHO_dh 162 .kvpvlvKlaPdltdeekkdiadvll.elkldgiivtNttvqrla.....idlkseknvkanktGGlsGkalkdialkvirelykrl 241
                  k++v+vK++Pd    e+ + + +++ + ++dg+iv+Ntt +rl        l+ e++    + GG sG++l    +k++ + ++ l
  KKY16555.1 257 tKPAVMVKVSPDEDSDEEVAGICEAVwASGVDGVIVGNTTKKRLDplprgYILRPEEEQILMEQGGYSGPQLFANTVKLVKKYRSLL 343
                 9***********988888877777777**************99731111133444444443599**********9999999877665 PP

  == domain 2  score: 40.9 bits;  conditional E-value: 2.3e-14
                 -EEEESS--SHHHHHHHHHHTECEEEESHHHHHHGTCHHHHHHHHHHH CS
      DHO_dh 246 piIgvGGiesgeDalekieaGAslvqvytalvfegpkiakkikkelee 293
                  i ++GGi++g+ ale ++aGAs+  vytalv+ g   +++ik+e+ +
  KKY16555.1 398 VIFATGGITTGKQALEVLNAGASVAMVYTALVYGGAGTISRIKEEMRD 445
                 4789*****************************************986 PP

>> PcrB  PcrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   8.8e-05      0.52       8      45 ..     261     301 ..     254     306 .. 0.80
   2 !    3.7   0.1    0.0062        37     180     213 ..     396     430 ..     378     443 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 8.8e-05
                 EEEEE-TTSS-CHH...HHHHHHCTT-SEEEEECSTCHHHH CS
        PcrB   8 hltklDPeeenpdE...iveiviesgtDavmigGsqsvtld 45 
                  ++k+ P+e+  +E   i e+v  sg D+v++g +++  ld
  KKY16555.1 261 VMVKVSPDEDSDEEvagICEAVWASGVDGVIVGNTTKKRLD 301
                 57899******999333457789**********99987776 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0062
                 SSEEEEESS--SHHHHHHHHCC.SSEEEE-CHHHH CS
        PcrB 180 karlivGGGirsaEkAkevvea.ADvivvGnvvee 213
                  + ++  GGi  + +A ev++a A v +v +++  
  KKY16555.1 396 PKVIFATGGITTGKQALEVLNAgASVAMVYTALVY 430
                 567999****************9998777665443 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.026   1.6e+02      28      64 ..      38      75 ..      17      77 .. 0.83
   2 ?   -1.7   0.0       0.2   1.2e+03     234     253 ..     283     302 ..     279     312 .. 0.79
   3 ?    9.8   0.0   5.9e-05      0.35     273     327 ..     398     448 ..     362     452 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.026
                HGGGGEEE---SSSS-SS-.B--EEETTEEESSSEEE- CS
      FMN_dh 28 aaferirlrprvlrdvskv.dlsttllGqklslPvlia 64
                +a+ ++ l+pr   d  ++ dl+++++G++l  P+ ++
  KKY16555.1 38 KALYHFGLHPRERSDPDRAgDLAISVFGHTLVNPIATS 75
                56777888888888888878**************9876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.2
                 HHTTESEEEE--GGGTSSTT CS
      FMN_dh 234 veaGvdgivvSNHGGRqldg 253
                  + Gvdg++v N   + ld 
  KKY16555.1 283 WASGVDGVIVGNTTKKRLDP 302
                 5689******9987777775 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 5.9e-05
                 -EEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      FMN_dh 273 evlvDgGirrGsDvlkAlalGAdavllGRpflyglaagGeeGvervleilraele 327
                  +++ gGi++G+ +l  l  GA++ ++  +++yg    G+  ++r+ e +r+e++
  KKY16555.1 398 VIFATGGITTGKQALEVLNAGASVAMVYTALVYG----GAGTISRIKEEMRDEIN 448
                 58899*********************98888777....77778888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.52
# Mc/sec: 2618.12
//
Query:       KKY16556.1  [L=399]
Description: putative integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       906  (0.0505327); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2642.16
//
Query:       KKY16557.1  [L=471]
Description: putative amine flavin-containing superfamily [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-10   41.2   0.0    1.9e-06   27.5   0.0    2.2  2  Amino_oxidase  Flavin containing amine oxidoreductase
    5.5e-10   39.3   0.0    1.2e-09   38.2   0.0    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    6.7e-06   25.5   0.0    0.00022   20.5   0.0    2.1  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    9.1e-06   25.1   0.0    1.8e-05   24.1   0.0    1.4  1  Thi4           Thi4 family
    2.4e-05   23.3   0.0    5.7e-05   22.0   0.1    1.5  2  HI0933_like    HI0933-like protein
    3.3e-05   23.2   0.0      6e-05   22.3   0.0    1.4  1  FAD_binding_2  FAD binding domain
    4.2e-05   23.3   0.0    7.4e-05   22.5   0.0    1.3  1  DAO            FAD dependent oxidoreductase
     0.0008   18.9   0.0     0.0012   18.3   0.0    1.2  1  FAD_oxidored   FAD dependent oxidoreductase
     0.0012   18.1   0.0     0.0019   17.5   0.0    1.2  1  FAD_binding_3  FAD binding domain
     0.0042   16.4   0.2      0.012   14.9   0.1    1.6  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.074   13.6   0.0       0.15   12.6   0.0    1.5  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.2e-09   1.9e-06       2      63 ..      36     102 ..      35     129 .. 0.87
   2 !   11.7   0.0   7.1e-05      0.12     222     266 ..     244     291 ..     222     337 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.2e-09
                    HHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEET....TEEEESS--EEET.TTHHHHHHHHHTTC CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvlEardrvGGRirtvrsd....GylielGamwftg.agnpllellkelgl 63 
                    +GL+aA+ L +++ +V+++E +  vGG+++ v+++    + +  lGa +ft+ +++ + ++++ +g 
     KKY16557.1  36 SGLSAAYDLEAKNKSVIIFEKQATVGGKCQAVYDSasdsSIFHPLGALFFTNdTYTQTRKIIDLVGQ 102
                    9***********************************9977888899999999988888888877765 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 7.1e-05
                    TEEEETSEEEEEEEEETTCEEEEETTSTEE...EESEEEE-S-HHHHH CS
  Amino_oxidase 222 gldirlntrVkeikregdgvtvtledgevv...eaDaVvvTvplgvlk 266
                    +++i+l+++V++i+r+g+   vt+++g+++   e+   +++ p+   +
     KKY16557.1 244 EGTIKLSSPVTKIDRSGEYPIVTYTSGNSTetqECSDLILAFPPTESA 291
                    689************999999999988888889**********99888 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   7.6e-13   1.2e-09       1      65 [.      30      97 ..      30      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 7.6e-13
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE...TT.CEECTS---EEETTHHHHCHHHH CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev...pg.vrvdygahifhgsgyypnvrrll 65
                   I+G+G sGl+aAy L  ++++v ++ek+  +GG+++ + +   +  + + +ga  f+  + y+++r+++
     KKY16557.1 30 IIGSGPSGLSAAYDLEAKNKSVIIFEKQATVGGKCQAVYDsasDSsIFHPLGALFFTN-DTYTQTRKII 97
                   9**********************************99866554435777788888866.6788888765 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.4e-07   0.00022       3      42 ..      28      66 ..      26     131 .. 0.74
   2 ?    2.9   0.0     0.031        51      57     107 ..     231     285 ..     199     313 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.4e-07
                 EEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  3 vvviGgGpAGlaaaltlaqagakvtlvelegtclnggcll 42
                 v++iG+Gp Gl+aa +l +++  v+++ +++++++g+c  
   KKY16557.1 28 VCIIGSGPSGLSAAYDLEAKNKSVIIF-EKQATVGGKCQA 66
                 99*************************.888888888854 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.031
                  H.....HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEEESEEEE-- CS
                  x.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  57 s.....evvkklnqgielllgeevvkidpgkkkvklekkkegdeekiaydklvlAt 107
                        e+++k+ +g ++l   +v+kid+  +   ++ ++++++e+ ++  l+lA 
   KKY16557.1 231 DfhavfEKFSKYIEGTIKLSS-PVTKIDRSGEYPIVTYTSGNSTETQECSDLILAF 285
                  156677778888888777777.9*****8886777777888999**********96 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.1e-08   1.8e-05      16      55 ..      24      62 ..      17      66 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.1e-08
                TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--T CS
        Thi4 16 aesDvvivGaGssGLtaayylakkpdlkvailersvspGG 55
                ae  v i+G+G+sGL+aay l  k +  v+i+e++ ++GG
  KKY16557.1 24 AENPVCIIGSGPSGLSAAYDLEAK-NKSVIIFEKQATVGG 62
                68889****************999.999**********99 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   3.5e-08   5.7e-05       3      39 ..      28      64 ..      26      66 .. 0.94
   2 ?   -2.8   0.0       1.2     2e+03     124     161 ..     245     284 ..     235     286 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 3.5e-08
                 EEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHH CS
  HI0933_like  3 viviGgGaAGlmaAisaakrgkrVlllekakklgrKi 39
                 v +iG G++Gl aA  +++++k+V+++ek+ ++g K 
   KKY16557.1 28 VCIIGSGPSGLSAAYDLEAKNKSVIIFEKQATVGGKC 64
                 89********************************985 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.2
                  -EEE-S--EEEEECETTE.EEEEE...TTEEEEESEEEE- CS
  HI0933_like 124 vklrletevksvekeedgkfrvkt..kseeeleadklvlA 161
                   +++l++ v++++++ +  +   t  +s+e+ e++ l+lA
   KKY16557.1 245 GTIKLSSPVTKIDRSGEYPIVTYTsgNSTETQECSDLILA 284
                  5788999999998777665544444557788999999998 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   3.7e-08     6e-05       2      37 ..      28      63 ..      27      78 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 3.7e-08
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgga 37
                   v +iGsG +GL+AA+ +  ++++v++ ek   +gg 
     KKY16557.1 28 VCIIGSGPSGLSAAYDLEAKNKSVIIFEKQATVGGK 63
                   679****************************99994 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   4.5e-08   7.4e-05       2      33 ..      28      61 ..      27      73 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 4.5e-08
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllekgdiag 33
                v+iiG+G  Gls+Ay+L +++  V+++ek+  +g
  KKY16557.1 28 VCIIGSGPSGLSAAYDLEAKNksVIIFEKQATVG 61
                8****************766569*******8887 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   7.3e-07    0.0012       2      38 ..      28      64 ..      27      74 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 7.3e-07
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGll 38
                  v+++G+gp+G+ AA+    + ++v++ e++  +GG  
    KKY16557.1 28 VCIIGSGPSGLSAAYDLEAKNKSVIIFEKQATVGGKC 64
                  99*********************************75 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.1e-06    0.0019       3      42 ..      27      66 ..      25      76 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.1e-06
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS- CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpra 42
                   +V+I+G+Gp+Gl++a  L  +  +v++ ek++t   + +a
     KKY16557.1 27 PVCIIGSGPSGLSAAYDLEAKNKSVIIFEKQATVGGKCQA 66
                   7********************9********9986665555 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   7.1e-06     0.012       2      33 ..      30      60 ..      29      65 .. 0.91
   2 ?   -2.1   0.0       1.1   1.8e+03      97     257 ..     246     275 ..     233     304 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.1e-06
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilEkgnig 33
                 IiG GP Gl+aa+ l+ ++  +++i Ek++ +
   KKY16557.1 30 IIGSGPSGLSAAYDLEAKNK-SVIIFEKQATV 60
                 9*****************98.8******9654 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.1
  Pyr_redox_3  97 piklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeeklvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvt 194
                   ikl + V+++++++e  +v                                                                              
   KKY16557.1 246 TIKLSSPVTKIDRSGEYPIV------------------------------------------------------------------------------ 265
                  45555555555555444444.............................................................................. PP

  Pyr_redox_3 195 rgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvev 257
                                                                       + ++g+++e+
   KKY16557.1 266 -----------------------------------------------------TYTSGNSTET 275
                  .....................................................4333333333 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.4e-05      0.15       2      35 ..      28      61 ..      27      72 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.4e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                v ++G+G +gl +A  l + +k+V ++e + ++ 
  KKY16557.1 28 VCIIGSGPSGLSAAYDLEAKNKSVIIFEKQATVG 61
                679*************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.70u 0.36s 00:00:01.06 Elapsed: 00:00:00.57
# Mc/sec: 2479.57
//
Query:       KKY16558.1  [L=718]
Description: putative beta-glucosidase 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-40  138.0   0.0    6.3e-40  137.3   0.0    1.4  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
    9.6e-39  133.6   0.0    1.4e-38  133.0   0.0    1.2  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    1.4e-23   82.8   0.0    2.4e-23   82.0   0.0    1.4  1  Fn3-like         Fibronectin type III-like domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.3   0.0   1.1e-43   6.3e-40      29     204 .]     387     585 ..     358     585 .. 0.85

  Alignments for each domain:
  == domain 1  score: 137.3 bits;  conditional E-value: 1.1e-43
                      SS-SS-BSSS----S---HHHHHHHHHHH.........-HHHHHHHHHHHTSEEEEEEEES...SB-TTSCSGHHSSTTHHHHHHHHHHTTSSE CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C  29 etlklGggsgtvtvsylvsplegirerles.......eegideaveaakeaDvavvvvgedpeiegEgvDrtdlalpeaqdelikavaaanknv 115
                      +tl +Gggsg+ +++y+++p+++i+er+ +       + ++++      +aD+++v++++    ++E++Drt+l+ + ++d+l+++vaa+++n+
       KKY16558.1 387 GTLITGGGSGSNSPPYVITPFQAIQERIIKdngmirwDFHSENPYPPYVNADACLVFINAY---ASESFDRTTLNDT-FSDNLVNSVAANCSNT 476
                      7899************************7789***99777888888999************...***********99.**************** PP

                      EEEEEESSGG--TTT.GTTTEEEEEE-S--GCCHHHHHHHHHTTSS---B--SS-EESSSGGG...........................S.-- CS
                      xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxx.............xx.xx RF
  Glyco_hydro_3_C 116 vvvlqsggpvavepw.keenvkAilaawlpGqegGtaiadvLfGdvnPsGkLpvtfpksledlpd...dyyeekdt.............yk.fe 191
                      +v+++s+g  +v+ w ++env+A+l a lpGqe+G+a++dvL Gdv PsGkLp+t++k+  d+ +   ++ + +               y+ f+
       KKY16558.1 477 IVIIHSAGIRTVDAWiDNENVTAVLFAGLPGQESGHALVDVLWGDVTPSGKLPYTIAKEQIDYGTllnSTISFD-AfpqdnfteglyidYRsFD 569
                      ****************999***************************************8888833222222222.1223445667777877677 PP

                      ---S...ETTTT-BCH CS
                      xxxx...xxxxxxxxx RF
  Glyco_hydro_3_C 192 gtpl...YpeGlglsY 204
                      ++++   +++G+glsY
       KKY16558.1 570 KRNVeprFEFGFGLSY 585
                      7777777999999999 PP

>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.0   0.0   2.4e-42   1.4e-38      63     315 ..      94     335 ..      62     339 .. 0.92

  Alignments for each domain:
  == domain 1  score: 133.0 bits;  conditional E-value: 2.4e-42
                    ...S--EEEE---BTTB---SSS.---S-HHHHHHHT-HHHHHHHHHHHHHHHHHHT--EE---B--.---STTSSSGGGSS-SSHHHHHHHHHHH CS
  Glyco_hydro_3  63 rlgiPlllavDqegGlvqrlgeg.tlfPsalalaatssldlikelgriiakelralgididfaPvvd.vnrdprngigvrsFsedpelvaalaaam 156
                    rlgi  l+ +D+  G++   +e    fP+ + +a t++++l++e g+++a+e r+ gi+i +aPv+  ++r  r g++ ++ s+dp+l++   +++
     KKY16558.1  94 RLGIESLCLSDAPDGIR--GQEYvSAFPAGIHIATTWDRSLMYEYGQALAEEYRDKGINIALAPVAGpLGRLARGGRNWEGLSADPYLAGIGMGRI 187
                    799999**********9..555569****************************************96489999999******************** PP

                    HHHHHHTT-EEEEEEETTGTT....-SSETTTSEEB----HHHHHHTTHHHHHHHHHTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS--- CS
  Glyco_hydro_3 157 vkGlqgagvaatvKHFpghGd....gavdshkelptvdhseeelrevdlvpfqaaieagvdsVMtaHvqfpaldgtpatgskklltdvLRkelGFd 248
                     kG+q+ gv+at KHF    +    + +d++ e   ++++ + ++e +++pf  a+++g+ +VM +   ++ ++++ a  ++kll ++L++elGF+
     KKY16558.1 188 TKGIQDIGVIATPKHFLLNEQefrrNPADGEGEAMSSNADDRTIHELYVFPFMDALREGAAAVMCS---YNRVNNSYACQNSKLLNGILKTELGFE 280
                    ****************997432322679999***********************************...*************************** PP

                    SEEEES-TTSHHHHCCS-HHHHHHHHHHHT-SBEES-S---SGHHHHHHHHHTTSS-HHHHHHHHHH CS
  Glyco_hydro_3 249 GvvvsDalamkeiadrggkeeavvlaLkAGvDilLvpeertseikalkkavkeGeltearidesvrr 315
                    G+v+sD+            ++  v++ +AG+D+ + +   +    +l +av++G+++  r+d+ vrr
     KKY16558.1 281 GLVISDWN----------GQHSGVASANAGLDLVMPDGGFW--GGNLTEAVNNGSVSVDRLDDMVRR 335
                    *******9..........455677888*************9..89********************99 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0     4e-27   2.4e-23       1      71 []     641     707 ..     641     707 .. 0.99

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 4e-27
                 EEEEEEEEESS-STTSBS-EEEEEEEEEE-TT-EEEEEEEEECGGG-EEETTTTEEE--SCEEEEEEESSS CS
    Fn3-like   1 evvqlYvsdpessverpvkeLkgFekveLapGesktvtftldrkdlsvwdeekqkwvvepGeytvlvgtss 71 
                 ev qlYv+ p++    p ++L+gF++v+++pGe+ tvtf+l r+dls+wd e+q+w++++G+y ++vg+ss
  KKY16558.1 641 EVPQLYVTIPNA----PIRQLRGFDRVAVNPGETNTVTFSLMRRDLSIWDIEAQQWRLQTGDYPIYVGASS 707
                 8**********9....*****************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 4404.96
//
Query:       KKY16559.1  [L=631]
Description: putative nadph-dependent fmn fad containing oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-32  111.6   0.0    6.3e-32  110.9   0.0    1.3  1  FAD_binding_1  FAD binding domain
    2.9e-30  105.3   0.1    2.5e-29  102.3   0.0    2.1  2  Flavodoxin_1   Flavodoxin
      2e-13   50.9   0.0    3.4e-13   50.2   0.0    1.4  1  NAD_binding_1  Oxidoreductase NAD-binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_1  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9   0.0   1.1e-35   6.3e-32      37     222 .]     248     443 ..     221     443 .. 0.91

  Alignments for each domain:
  == domain 1  score: 110.9 bits;  conditional E-value: 1.1e-35
                    TBT----TT-EEEE-----HHHHHHHHHHHT--T..T-EEEEEESSTT........S--SSSSSEEHHHHHHHTB--SS---HHHHHHHGGG-SSH CS
  FAD_binding_1  37 dsglkYetGdhlgvypsNneelVeellellgldpkadevvelkaldee......saekeprleptTlrqalkyylditgppskqlleaLaefasee 126
                    +s + Y +Gd+l++ p+N  ++V++l+el+g    ad ++++k++ ++      + + +   +p+Tlr +l+ +ldit  p++ ++ ++a++ s+e
     KKY16559.1 248 ESSMPYLPGDALAILPKNFYQDVDALIELMGWSGLADSPIRIKHDMSTvgpslgHPDLAIAAQPMTLRSLLANFLDITAIPRRSFFAKIAKYTSNE 343
                    4689******************************************9999988777778889********************************** PP

                    HHHHHHHHHHH-HHHHHTTTTT--HHHHHHHHHTT---TTS-HHHHHHHS-B---EEEEB-S-TTTTTT.....EEEEEEE--EE---SSS--EE- CS
  FAD_binding_1 127 eekqkLekLssdegakeykelklneartllevleefpsvklplefLlevlpqLkpRyYSiSssskvhpd.....evhltvvVveyetdgegrirkG 217
                      + +L   s +++ +ey + +   +r++le+l+ef svk+p e+ +++ p ++pR +Si+s    + +     + +l+v++v+y+t    +ir+G
     KKY16559.1 344 MHQGRLLEFSDPQYIDEYYDYATRPRRSILEILQEFDSVKIPWEEAINIFPVMRPRQFSIASGGSLKRNadgtsRFELLVAIVKYRT-VIKKIRQG 438
                    **************************************************************87666553333479**********8.9******* PP

                    HHHHH CS
  FAD_binding_1 218 vcsny 222
                    vc+ y
     KKY16559.1 439 VCTRY 443
                    ***98 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.0   4.1e-33   2.5e-29       1     143 []      12     149 ..      12     149 .. 0.93
   2 ?    0.6   0.0       0.1     6e+02      41     102 ..     493     584 ..     484     608 .. 0.72

  Alignments for each domain:
  == domain 1  score: 102.3 bits;  conditional E-value: 4.1e-33
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEEC CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglGd 97 
                   +lYg+etG++++lA++l+++l++  f++ v+sl+ ++  ++ +   +l ++v+sT+g+Gd+p n++  f+  l  k  +l+ g l+g ++a++glGd
    KKY16559.1  12 VLYGTETGTSQDLAEELGQILERFRFQSYVLSLDCVS--PNILSCFTLTVFVVSTTGQGDFPSNAK-AFWTSLLKK--KLDCGYLKGIKYALVGLGD 103
                   89*********************99999999999999..67888889*******************.666555555..3799*************** PP

                   TTSSSTTHHHHHHHHHHHHTTCEEESSSEEEETTSTHGHHHHHHHH CS
  Flavodoxin_1  98 sayenFcaagkkldekleelGaerllkllegdednqegqeeafrkW 143
                   s+y++F+ a++kld++l +lGa+ +++  e+de+ ++ +e af +W
    KKY16559.1 104 SSYPKFNFAARKLDKRLLQLGATEIGEPCEADEQGDDSTERAFVSW 149
                   **********************************9999****9999 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.1
                   GGGGTHSEEEEEEEEETTTBEEGGGH.HHHHHHHHHHCHH.............................GCCSTTTTEEEEEEEEECTTSSS CS
  Flavodoxin_1  41 seieeealllvvtsTfgnGdppenge.sffqdllelkgde.............................ledgdlsgvrfavfglGdsayen 102
                   +++ + +l +   sT   G  +en+  +f++++ +   ++                             + + +l + +  v+ +G+s+  +
    KKY16559.1 493 KDFVHRKLGATESSTLIFGCRSENADyFFKDEWKAKSLQQkdplrlltafsrdqkgkiyvqdrireeaeTLFAELYDNKATVVLCGSSGSMP 584
                   57788888888889999999999999777777777776557777777777777777777777777666644455666666666677766655 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   5.7e-17   3.4e-13       1     108 [.     476     588 ..     476     589 .. 0.88

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 5.7e-17
                    EEEEGGGGHHHHHHH..HHHHHH.CTTCSEEEEEEEESSGC.GSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH....H CS
  NAD_binding_1   1 miagGtGiaPvrsvl..railee.akdktkvvlvyGnrtee.dllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleells....l 88 
                    +i++GtGiaP+r+vl  + ++++    +   +l++G+r+e+ d ++++e+++ + ++++ l+++++ sr+++g+     +vqd+++ee++     l
     KKY16559.1 476 LIGAGTGIAPLRAVLfeKDFVHRkLGATESSTLIFGCRSENaDYFFKDEWKAKSLQQKDPLRLLTAFSRDQKGK----IYVQDRIREEAETlfaeL 567
                    79***********9854567776455999***********99**********9999999999999999999996....999999999999999999 PP

                    SSTTEEEEEEC.SHHHHHHHH CS
  NAD_binding_1  89 kkeethvyvCG.ppgMikavr 108
                     ++++ v++CG    M kavr
     KKY16559.1 568 YDNKATVVLCGsSGSMPKAVR 588
                    9**********6667877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 4049.04
//
Query:       KKY16560.1  [L=605]
Description: hypothetical protein UCRPC4_g05897 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3995.43
//
Query:       KKY16561.1  [L=765]
Description: hypothetical protein UCRPC4_g05898 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-64  217.1   4.7    1.2e-61  208.4   2.3    2.1  2  Mg_trans_NIPA  Magnesium transporter NIPA
    1.2e-05   25.5   0.1    1.2e-05   25.5   0.1    3.9  3  EamA           EamA-like transporter family
     0.0057   16.2   2.3      0.009   15.5   0.0    2.2  3  SLC35F         Solute carrier family 35
  ------ inclusion threshold ------
       0.12   12.2   1.8       0.43   10.3   0.4    2.4  2  Trp_oprn_chp   Tryptophan-associated transmembrane protein (T
       0.16   11.5   5.6       0.44   10.1   5.6    1.7  1  BaxI_1         Bax inhibitor 1 like
        2.9    7.7   3.8        2.3    8.1   1.7    1.8  2  DUF1461        Protein of unknown function (DUF1461)
        9.3    5.5   8.9         15    4.8   8.9    1.3  1  TssN           Type VI secretion system, TssN


Domain annotation for each model (and alignments):
>> Mg_trans_NIPA  Magnesium transporter NIPA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00027      0.69       4      34 ..      38      68 ..      35      74 .. 0.90
   2 !  208.4   2.3   4.8e-65   1.2e-61      44     293 ..     160     406 ..     147     408 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00027
  Mg_trans_NIPA  4 liGvlLavssslfigssfilkkkgllrlark 34
                   +iG++ a+ ++++i+ ++++++++++r+ r+
     KKY16561.1 38 FIGIVTAIVGNVLISFALNIQRYAHIRIERE 68
                   68*************************9775 PP

  == domain 2  score: 208.4 bits;  conditional E-value: 4.8e-65
  Mg_trans_NIPA  44 yaylkevlWwaGlltmavGeaanfaayafaPatLvtPLGalsvivsavlasllLkekLkllgllGcllailGstvlvihaPkeeeieslkevadll 139
                     +ylk+++WwaG+++m++Gea+nf+ay+faPa++v+PLG ++++   ++a l+Lke++++ + lG+l+ai+G++v+v  a   ee    + ++d +
     KKY16561.1 160 KSYLKSPYWWAGIIMMTIGEAGNFIAYGFAPASIVSPLGVVALVSNCLIAPLMLKERFRKRDFLGVLVAIAGAVVVVSSARTTEEKLGPDDLWDEI 255
                    57********************************************************************************************** PP

  Mg_trans_NIPA 140 vdpaflvyvilvvvvvlvlilyveprkGktnilvyitlcsllgsltvisvkalgiaikltlaGkaqlkyalawilllvlvicvvlqinyLnkaldi 235
                    + ++fl y  ++ ++ ++ ++  + ++G++ il+ i+l+ l+g +t +s k+++  +  tl     l+ ++++il++vlv +  lqi+y+n+al+ 
     KKY16561.1 256 RRWEFLTYLLITGIL-VITLMWASGKYGHRSILIDIGLVGLFGGYTALSTKGVASLLSYTL--FRALTFPITYILVVVLVGSALLQIRYINRALQR 348
                    ********9888755.5555677889****************************9998887..578999*************************** PP

  Mg_trans_NIPA 236 fntsivtPvyyvlfttlvivasailfkefleasvddvlgelsGfllvllgvfllhatr 293
                    f+ + v P  +vlft +vi+ sa+l+++f+++++d v   + G++l +lgv+l++  r
     KKY16561.1 349 FDSTQVIPTQFVLFTLSVIIGSAVLYRDFNSTAADRVGKFVGGCVLTFLGVYLITGGR 406
                    *****************************************************99766 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.088   2.3e+02     118     136 ..      34      52 ..       7      57 .. 0.84
   2 !   25.5   0.1   4.7e-09   1.2e-05      70     136 ..     170     236 ..     155     237 .. 0.93
   3 ?   -2.4  12.9       1.9   4.9e+03      44     135 ..     309     402 ..     264     404 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.088
        EamA 118 tlkqllgivlillGvllil 136
                 ++++++giv +++G +li+
  KKY16561.1  34 QWSSFIGIVTAIVGNVLIS 52 
                 5788888888888888876 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 4.7e-09
        EamA  70 lgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                  g++ ++++    f+a    +as++s++  ++ v   +++ l l+e++ ++++lg++++++G+++++
  KKY16561.1 170 AGIIMMTIGEAGNFIAYGFAPASIVSPLGVVALVSNCLIAPLMLKERFRKRDFLGVLVAIAGAVVVV 236
                 5788999999999***************************************************997 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.9
        EamA  44 llliiallkegklaklslkdwllllllgllgtvlaf.llffyalkktsasnaslitslePvftlilsvlllgekltlkq.......llgivlillGvll 134
                  ll ++l+++ ++      ++ ++l++ l+g++l +   ++ al++ +++++ + +++   +++i+++++l   ++++        + g+vl +lGv+l
  KKY16561.1 309 SLLSYTLFRALTF------PITYILVVVLVGSALLQiRYINRALQRFDSTQVIPTQFVLFTLSVIIGSAVLYRDFNSTAadrvgkfVGGCVLTFLGVYL 401
                 3444444444444......78899999999999999456689*****************************9999986523333326778888888888 PP

        EamA 135 i 135
                 i
  KKY16561.1 402 I 402
                 7 PP

>> SLC35F  Solute carrier family 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.64   1.6e+03     126     145 ..      34      53 ..      30      58 .. 0.83
   2 !   15.5   0.0   3.5e-06     0.009      72     147 ..     167     239 ..     154     252 .. 0.86
   3 ?   -2.0   0.7      0.79     2e+03      80     125 ..     291     341 ..     259     391 .. 0.58

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.64
      SLC35F 126 rlvkiigvvvcilGvvllvv 145
                 +++ +ig+v  i+G vl+ +
  KKY16561.1  34 QWSSFIGIVTAIVGNVLISF 53 
                 6899**********998866 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 3.5e-06
      SLC35F  72 kwykylllalvdveanylvvkayqytsltsvqlldcfaipvvlvlswlflkvryrlvkiigvvvcilGvvllvvsd 147
                  w+  +++  +   +n++   ay ++    v+ l   a++   +++ l+lk r+r   ++gv+v i+G v++v s 
  KKY16561.1 167 YWWAGIIMMTIGEAGNFI---AYGFAPASIVSPLGVVALVSNCLIAPLMLKERFRKRDFLGVLVAIAGAVVVVSSA 239
                 699999999999999987...788888888889999999999999*************************999875 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.79
      SLC35F  80 alvdveanylvvkayqytsltsvqlldcfaip.....vvlvlswlflkvry 125
                 +lv + + y  + +   +sl+s +l+ + + p     vv+++   +l++ry
  KKY16561.1 291 GLVGLFGGYTALSTKGVASLLSYTLFRALTFPityilVVVLVGSALLQIRY 341
                 455555555555555555666666655544331111133333344566666 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.4   0.00017      0.43      41      90 ..     190     243 ..     165     253 .. 0.75
   2 ?   -0.2   0.0      0.28   7.3e+02     120     144 ..     385     409 ..     292     413 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00017
  Trp_oprn_chp  41 wapaltalAlvllA..aavAvlavrglg..rrvvgvllalagagaavaalsllt 90 
                    a+ + +l++v+l   +++A l+++  +  r  +gvl+a+aga+++v++++   
    KKY16561.1 190 PASIVSPLGVVALVsnCLIAPLMLKERFrkRDFLGVLVAIAGAVVVVSSARTTE 243
                   566778888888863346777777666511569***************998765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.28
  Trp_oprn_chp 120 vlalaggvllllagvllllrarswp 144
                   v  ++gg +l++ gv l+  +r+ +
    KKY16561.1 385 VGKFVGGCVLTFLGVYLITGGRHNR 409
                   4457888888889998888888765 PP

>> BaxI_1  Bax inhibitor 1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.6   0.00017      0.44      69     152 ..     313     403 ..     254     408 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00017
      BaxI_1  69 vasfkkkvspalvllYAvleGlflGgislvfea.......pgivvqAvlgTlgvfavmlvlYktgairvtpkftkivvaaligilllylvn 152
                  + f+  + p++ +l  vl G +l  i ++  a       + i +q vl Tl v+++ +vlY+  +  + +++ k+v ++++++l +yl++
  KKY16561.1 313 YTLFRALTFPITYILVVVLVGSALLQIRYINRAlqrfdstQVIPTQFVLFTLSVIIGSAVLYRDFNSTAADRVGKFVGGCVLTFLGVYLIT 403
                 345677778888888888888888866666655666999999**********************************************985 PP

>> DUF1461  Protein of unknown function (DUF1461)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.5   3.8e+03     125     149 ..     253     276 ..     220     281 .. 0.42
   2 ?    8.1   1.7   0.00091       2.3      98     156 ..     322     379 ..     313     380 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.5
     DUF1461 125 rllkskslllavilllliliilgll 149
                   ++ +  +l+++l++ il+i++++
  KKY16561.1 253 DEIR-RWEFLTYLLITGILVITLMW 276
                 2233.23344444445555555444 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00091
     DUF1461  98 ivrlvtlillvllllllivlkkkkkkirllk.skslllavilllliliilgllalidFdk 156
                  + ++++++lv + +ll + +  ++  + +  ++ ++++++l++l +ii+ ++++ dF++
  KKY16561.1 322 PITYILVVVLVGS-ALLQI-RYINRALQRFDsTQVIPTQFVLFTLSVIIGSAVLYRDFNS 379
                 3334444444333.33322.2223445555568899**********************97 PP

>> TssN  Type VI secretion system, TssN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   8.9     0.006        15       1     139 [.     260     401 ..     260     404 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.006
        TssN   1 flkylllpllavilllilsliakknkllkkkkliiyiLlaglvla...lpgllgf..lknefvpygyillqilylllGi..lhlylllkkffkelkekk 92 
                 fl+yll+  + vi l+++s +  ++  l +   ++ ++     l+   + +ll++  ++  + p+ yil+++   l+G+  l ++  +++  + +++++
  KKY16561.1 260 FLTYLLITGILVITLMWASGKYGHRSILIDI-GLVGLFGGYTALStkgVASLLSYtlFRALTFPITYILVVV---LVGSalLQIR-YINRALQRFDSTQ 353
                 5667777777777777777666655544443.3334444444454111455666654444555666665544...4554104444.4556666677777 PP

        TssN  93 .ilfeilltlivillglvlfvlvfnllselqygvwaatsllvfiipll 139
                  i  +++l+ +++++g+++ +  fn +   + g ++ +++l+f+ ++l
  KKY16561.1 354 vIPTQFVLFTLSVIIGSAVLYRDFNSTAADRVGKFVGGCVLTFLGVYL 401
                 6999***************************************86665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 5077.54
//
Query:       KKY16562.1  [L=298]
Description: hypothetical protein UCRPC4_g05899 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1914.92
//
Query:       KKY16563.1  [L=193]
Description: hypothetical protein UCRPC4_g05900 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 1208.06
//
Query:       KKY16564.1  [L=269]
Description: putative dna-directed rna polymerase iii subunit c31 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-39  134.1  24.8    1.7e-38  133.1  24.8    1.4  1  RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc3
  ------ inclusion threshold ------
          5    6.6   9.1        2.9    7.4   7.4    1.6  2  PPP4R2           PPP4R2


Domain annotation for each model (and alignments):
>> RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.1  24.8   1.9e-42   1.7e-38       1     225 [.       3     253 ..       3     254 .. 0.71

  Alignments for each domain:
  == domain 1  score: 133.1 bits;  conditional E-value: 1.9e-42
  RNA_pol_3_Rpc31   1 RgggrgrgggrsgnleelpwglgeelgeepdtapselfPplslpvakplteeersqvslyrklreqihdgpfytqkrtkks.lsaeekeskkga 93 
                      Rgg+  rgggr+g+ e+  w   ++l+++++  p+++fP+++ + + pl++ er +  +yr++re+++dgp+yt+ + ++  +      +k ++
       KKY16564.1   3 RGGR--RGGGRKGGPETEDWL--DDLEDKKKWIPENTFPSIPHVKPAPLSQSERIRFLHYRRFREALRDGPLYTVLEPNSLtD------EKGKV 86 
                      6776..455555666666677..6789999999****************************************8777777522......36789 PP

  RNA_pol_3_Rpc31  94 kekatfdpftgierYs.dkylkkertlpklderpyvkefFPkELwptlkdgkd.............ekkeikgkskkkk.............ea 160
                      +++a f+pf+g+++Ys  ky+k +rtlp+l+ rpy++++ P+ELw+ l d+k+             +           +             ++
       KKY16564.1  87 NKRAGFNPFEGMPTYSeTKYKKAKRTLPDLSYRPYALKYYPQELWSIL-DPKRkapewqtlesqqtT-----------SavtlgkrvfadadKD 168
                      99**************66******************************.566645555444332220...........1223333356655533 PP

  RNA_pol_3_Rpc31 161 deedeegkelleklk..........elaeeeddee................ekkekedeeeee.eeeeddefdddded.ggDYNaekYFDnGd 225
                      d++de+++++ ++                     +                ++++++ +e+ +  e++d ++++ d+  g+DY+ae+YFD G+
       KKY16564.1 169 DDDDEDDDDIRAAGRkkrrkkqrtdP--------TnpgqkkgleaedeygpDPDQADPDEDGDeVENVDTDYSESDDGgGDDYDAEQYFDTGE 253
                      34444444444333322233333330........145666666666668874433333333334799******999956*************8 PP

>> PPP4R2  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.34     3e+03      56      77 ..      28      49 ..      22      67 .. 0.74
   2 ?    7.4   7.4   0.00033       2.9     210     283 ..     162     243 ..      75     248 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.34
      PPP4R2 56 tetiPeeeipalPNVeifnlee 77
                ++ iPe+  p +P V + +l++
  KKY16564.1 28 KKWIPENTFPSIPHVKPAPLSQ 49
                6679999999999999888543 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00033
      PPP4R2 210 svnlgfedeeekeedd.....neseesaseseeiteekdesvkvee.....kdddeeddeedtdyveeeeddesedddeeeeee 283
                  +  +++d++++++dd     +  ++  ++++++ ++  +++ +e+     +d d+ d +ed d ve+ ++d se+dd   ++ 
  KKY16564.1 162 FADADKDDDDDEDDDDiraagR--KKRRKKQRTDPTNPGQKKGLEAedeygPDPDQADPDEDGDEVENVDTDYSESDDGGGDDY 243
                 3333333443333333765432..222333333334444444444477889888899999999999987777777777655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 1637.10
//
Query:       KKY16565.1  [L=264]
Description: putative cyclin domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00079   19.2   0.0      0.084   12.6   0.0    2.3  2  Cyclin_N  Cyclin, N-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   4.7e-06     0.084      45     125 ..      34     150 ..      28     152 .. 0.69
   2 !    4.3   0.0    0.0018        32      71      92 ..     197     218 ..     175     232 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.7e-06
                 TT--TTHHHHHHHHHHHHHHHS.---CC..CHHHHHHHHHHHHHHH..HSSS---HHHHHHHT..............................TT.SS- CS
    Cyclin_N  45 fkltpetlflavnyldRflskk.svpkd..klqlvgatcLllAaKv..eeisppkledlvyit..............................de.aft 107
                 ++l +e+++ a+++l Rf   + s+  +   ++   a++L+l aK+    +sp +l  ++++                               ++   +
  KKY16565.1  34 LRLPQEVIAQAIVLLQRFTVMNaSTDASeiSAKDASAASLYLTAKLsfTPVSPRSLLTVYHYLqspssplvllnpptnsmtsgsdpsihhlseGNyEAS 132
                 5899***************9652444447799*************944223344444444444666666666666666666666666666654335667 PP

                 HHHHHHHHHHHHHHTTT- CS
    Cyclin_N 108 eeeilemErliLetLnfd 125
                 ++ +   E  iL++L fd
  KKY16565.1 133 RNRLYLHESIILKALAFD 150
                 778888888888888887 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0018
                 CCHHHHHHHHHHHHHHHHSSS- CS
    Cyclin_N  71 dklqlvgatcLllAaKveeisp 92 
                 ++ + +++++++lAaK  e++ 
  KKY16565.1 197 HQPNALAVAAIYLAAKEVEVKL 218
                 577889**********887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.54
# Mc/sec: 1465.64
//
Query:       KKY16566.1  [L=483]
Description: hypothetical protein UCRPC4_g05903 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      0.003   17.6   3.2        2.8    8.0   0.0    2.5  2  CtIP_N          Tumour-suppressor protein CtIP N-terminal dom
  ------ inclusion threshold ------
      0.023   14.6   1.9       0.16   11.9   0.4    2.3  2  NTase_sub_bind  Nucleotidyltransferase substrate binding prot
       0.17   11.1   0.0        0.3   10.3   0.0    1.3  1  Vasohibin       Vasohibin


Domain annotation for each model (and alignments):
>> CtIP_N  Tumour-suppressor protein CtIP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   2.7   0.00069       4.1      21      67 ..     260     306 ..     244     332 .. 0.82
   2 !    8.0   0.0   0.00047       2.8      34      68 ..     441     475 ..     427     477 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00069
      CtIP_N  21 ekvlelkkercldaqrleelfsknqqlreqqkalkenikvlenrLra 67 
                 + ++++++er ++a +le+  ++n++l+ q   + e+    e+ ++a
  KKY16566.1 260 RTLRDVTSERNVHADELEAAQTRNEHLKLQLTDMAEKAIEQEKAMKA 306
                 457899**********************9998888877777766665 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00047
      CtIP_N  34 aqrleelfsknqqlreqqkalkenikvlenrLrag 68 
                   + +e ++  + l+e+ kalk++i+ le  L ++
  KKY16566.1 441 GMSSSEAWAVVHVLKEESKALKDTISHLEAGLDSS 475
                 4455677888999****************999875 PP

>> NTase_sub_bind  Nucleotidyltransferase substrate binding protein like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   2.7e-05      0.16      27      71 ..     241     285 ..     226     309 .. 0.78
   2 ?    1.8   0.2     0.036   2.1e+02      42     110 ..     301     373 ..     297     381 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.7e-05
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCTTTHHHHHHH CS
  NTase_sub_bind  27 dlerdgvIqrFEftyElawkllkryleeegisaeavsprdliRea 71 
                     ++  +g+ q+F  +y +a+++l+++  e++++a+++++ ++  e 
      KKY16566.1 241 QMNAEGALQKFQTAYTQALRTLRDVTSERNVHADELEAAQTRNEH 285
                     67789**************************99998884444444 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.036
                     HHHHHHHHHHHHHHTSSSCCTTT..HHHHHHH.HHTTS-.S-HHHHHHHHHHHGCGGGTTSHHHHHHHHHTHH CS
  NTase_sub_bind  42 Elawkllkryleeegisaeavsp..rdliRea.aeagli.edgevwlemledRnltshtYdeetaeevveaia 110
                     E a+k + + l +e   +++ ++  r +++   +e +   ed +     +++Rn t+   +e+ ae+ ++a++
      KKY16566.1 301 EKAMKAMAEELAFERQRRSEEEAfrRRTLKMVpLEDQASsEDSKFLTPKRSNRNSTTPSLNESEAESDISAAE 373
                     5667777777766555444444445444444314443334666677788999*****9999999998777766 PP

>> Vasohibin  Vasohibin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0     5e-05       0.3     182     236 ..     247     301 ..     232     308 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5e-05
   Vasohibin 182 lirefeesYeeylHtlkkvkiglyvphdphsvekiewkhlvlnlkklseedlrke 236
                  +++f+++Y++ l tl+ v+  + v  d     + + +hl l+l+ + e+ +++e
  KKY16566.1 247 ALQKFQTAYTQALRTLRDVTSERNVHADELEAAQTRNEHLKLQLTDMAEKAIEQE 301
                 4689*******************************************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1435  (0.0800379); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.49
# Mc/sec: 2966.51
//
Query:       KKY16567.1  [L=2402]
Description: putative tho2 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     6e-231  768.5   0.0   9.4e-231  767.8   0.0    1.3  1  THOC2_N   THO complex subunit 2 N-terminus
    2.3e-99  332.4   0.3    3.4e-99  331.8   0.3    1.3  1  Tho2      Transcription factor/nuclear export subunit protein
    3.9e-25   87.7   0.0    8.1e-25   86.7   0.0    1.6  1  Thoc2     Transcription- and export-related complex subunit


Domain annotation for each model (and alignments):
>> THOC2_N  THO complex subunit 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  767.8   0.0  1.6e-234  9.4e-231       1     630 []      56     790 ..      56     790 .. 0.94

  Alignments for each domain:
  == domain 1  score: 767.8 bits;  conditional E-value: 1.6e-234
     THOC2_N   1 ltdeviasWessgrqelveklkqarsdededelsslfqellrsvlderlspedagsfvkeilkeeseeseksk.........aedvaklfldvvsvlde 90 
                 +t++++asWe++gr++l+e +k+a ++ ++  +ssl+qe+  s ld+rl+p+ ag++vk+++  +++++ + +         + dv++lfld++svl+e
  KKY16567.1  56 VTEQTLASWETQGRATLLEIVKTAIQQSNALLISSLLQEITVSGLDGRLDPASAGDVVKQMIAMNESAHGTYAgtkdeasagKLDVKTLFLDTLSVLTE 154
                 6999***********************************************************8877765544889999******************** PP

     THOC2_N  91 eedlakllrkllaatiiseslmreeldskllqelglvrdtvferklirkstnllYrqkkyNLLrEeseGYSkLitelfttsdseepseekaeetlervk 189
                 +e ++ + r+l+++t+is++ mreelds+llq+lgl+rdt f+r++irk+tnllYrq+++NLLrEeseG++kL+telf ts+   p  e++eet+ervk
  KKY16567.1 155 SEASTVVARTLVSETGISPEAMREELDSTLLQSLGLIRDT-FARMGIRKQTNLLYRQANFNLLREESEGFAKLMTELFATSERG-PATEVVEETVERVK 251
                 ****************************************.**************************************99998.89************ PP

     THOC2_N 190 aliGkFdLDpgRvLDviLdvfaavvvkqyrffvklLrasswwPr....................................................... 233
                 a+iG+FdLD+g++LDv+Ld+f +v+vkq+rffvk+Lr+s+wwPr                                                       
  KKY16567.1 252 AMIGAFDLDVGKTLDVVLDIFGSVLVKQCRFFVKFLRKSPWWPReggvmsshgpdslrvgglphwaqpeyslfsekeksehqdlvderdrrfwkrarqv 350
                 *************************************************************************************************** PP

     THOC2_N 234 .........................deesewieetktlppggnrvaAqlLgfklrfysse....addelpenllylaAlLIkiGfislsdlYphLspdd 303
                                          d++++wieet+tlpp+gnr+aAqlLgfklrfyss+    ++d+lp+nl+yl+AlLIkiGf+sl+dlYphL+++d
  KKY16567.1 351 glkaffelggrlagdgysngtmaeeDDTKKWIEETGTLPPQGNRDAAQLLGFKLRFYSSSsarsQSDTLPDNLIYLSALLIKIGFVSLKDLYPHLWRAD 449
                 *************************889*********************************************************************** PP

     THOC2_N 304 eemealkekyekeleekssek....gsanaLamagaLsdddDtep.............kkekeakkkekakkkee...eekeeepepeklkdqkiqLlk 382
                 e+me l ++++ke+ e+   +    g++naL+magaL+  dDt p             +  +++ +k ++++k++   + ++++pe   + dqk+ Llk
  KKY16567.1 450 EDMEVLCQQKQKEKVERELAArpgaGAKNALLMAGALA--DDTLPppvpnrlrevearS--STP-SKLSEPDKTKpvgDIEDNLPE---PIDQKVSLLK 540
                 *****99999999888855558**9*************..999999******8875322..222.233333333300033333444...448******* PP

     THOC2_N 383 aLLaiGalpeslfiLgryPwlaevdpeipelihRilehsleplyesvravplssee......kvaedqsglpkgskvkltespkkrllrwpktdkple. 474
                 +LL+iGalpesl+iLgr+Pw+++++p++pe+ihRi++hs++++ye +   pl+++       +++++q+glpkg+ +kl+e+p++++++w+  dk+ + 
  KKY16567.1 541 SLLTIGALPESLYILGRFPWILDLYPDLPEYIHRIIHHSISKVYEPLD--PLKDRHslrdqrRLTDEQAGLPKGQ-IKLVEAPVRKTMKWALLDKEDSs 636
                 **********************************************88..55555545665455557********.*******************7775 PP

     THOC2_N 475 ldlnkkyrFyydeWkdnlpvcqtvddvfklckellkllGvklgkdpeLlsklcrIgkksleeedeseenrerWldllrrlllPalsllkenpgvvdevy 573
                 +d + +yrFy+d+W+dn+pvcqtvddvf+lc+++++l+Gv++g+d++Ll+k +rIgk s+ + d+se+n++rW++l++rll+Palsl+k+npgv++ev+
  KKY16567.1 637 ID-GVDYRFYWDDWNDNVPVCQTVDDVFTLCDTFVNLSGVRIGQDTSLLVKFVRIGKYSM-ATDTSESNSARWIKLCKRLLVPALSLTKANPGVINEVW 733
                 55.*********************************************************.9999********************************** PP

     THOC2_N 574 eLlklfplekRYslYgewfegltsrlpeikaafakaeketkdiLkrlSkenikqmaR 630
                 +L++lf+ e+RYs+Y+ew +g ts+ p ik+af+ a+ etkd+LkrlSk+n+k+ aR
  KKY16567.1 734 DLISLFSRETRYSMYTEWSSGRTSKTPPIKVAFDLARSETKDVLKRLSKTNLKPTAR 790
                 ******************************************************998 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.8   0.3  5.7e-103   3.4e-99       2     301 .]    1165    1463 ..    1164    1463 .. 0.97

  Alignments for each domain:
  == domain 1  score: 331.8 bits;  conditional E-value: 5.7e-103
        Tho2    2 eilspefyvtFWslslyDiyvpkeqYekeieklkseieelakdrsderaaakkkkkekkrlkeliekLeeEkkeqiehvekvkkrLkeekkswfknd 98  
                  +i+   fy+tFW+lslyD+++p ++Ye+e+++ +++i + ++drsd     k+++++kk l +li+ L +E+ ++ ++ + +k rL +ek++wf++ 
  KKY16567.1 1165 NIIGLPFYTTFWQLSLYDLNIPGAAYEAELTRQNKQIVSNNSDRSD----LKRRDERKKLLADLIDDLLAENRQHLKSFADTKGRLLREKEHWFSDM 1257
                  68999******************************99998555555....89999999*************************************99 PP

        Tho2   99 ekkkkeitdallqrcilPRlllsplDAlycakfvkllhelktpnFstldlldrlfkan.liplifscTerEaenlgrFlneilkdlkrWhkdeeaye 194 
                   +k+++++ al++rc+lPR+ lsplDA +c+k++k++h ++tpnF+tl ++d +f++  l++l+fsc+ +Ea+nlgrFlne+l+dl+rWhkd+ +y+
  KKY16567.1 1258 FQKHESLNIALMERCFLPRIALSPLDAFFCFKMIKFMHANGTPNFRTLGFYDLIFREArLTSLVFSCSSKEADNLGRFLNEVLRDLTRWHKDKVVYD 1354
                  9************************************************************************************************ PP

        Tho2  195 keal..kkdlpgfqkklkeegk.ekelkyeqfrkvlkkwhkkilkalkscleskeymeirNaiivLkkvlevFPavknsgekvlnaveklakqekre 288 
                  +ea   kk+lpgf+kk++++gk e++l+ye+frk+l+kwh+ ++kalk+cl+s++ym+irNai vLk+++++FPav+++g++++++v++l+k++ +e
  KKY16567.1 1355 REACgsKKQLPGFAKKVAANGKpETFLDYEDFRKILYKWHTVLHKALKNCLISTDYMHIRNAISVLKAISQHFPAVNWIGTSLQTTVSDLQKSD-KE 1450
                  ***9999**********888888*********************************************************************76.8* PP

        Tho2  289 Dlkvlansllkll 301 
                  D++v + +l++ l
  KKY16567.1 1451 DVRVPSAALMGDL 1463
                  ********99876 PP

>> Thoc2  Transcription- and export-related complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.0   1.4e-28   8.1e-25       1      76 []     792     867 ..     792     867 .. 0.99

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 1.4e-28
       Thoc2   1 laklshsnPlivfevvlsqiesYdnlievvvdalkyltslsyDvLtyclleaLanserervkedglnlskWlqsLa 76 
                 lak++++nP + ++v+l qie+Ydn++evv + ++y+t l+yDvL+++l++aL+  +r+rv+e gl +s+Wl +La
  KKY16567.1 792 LAKIAYANPHVAINVALGQIEAYDNFAEVVTEGARYFTILGYDVLSWSLISALGRAGRSRVQEGGLLTSRWLAALA 867
                 8*************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.28u 0.34s 00:00:01.62 Elapsed: 00:00:00.54
# Mc/sec: 13435.37
//
Query:       KKY16568.1  [L=314]
Description: putative rnp domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-32  111.0   0.2    1.2e-15   57.1   0.0    3.2  2  RRM_1            RNA recognition motif. (a.k.a. RRM, RBD, or 
    7.2e-05   22.8   0.0     0.0099   16.0   0.0    2.6  2  RRM_7            RNA recognition motif
    0.00011   21.8   0.0       0.56    9.8   0.0    3.1  3  RRM_5            RNA recognition motif. (a.k.a. RRM, RBD, or 
     0.0021   18.4   0.2         13    5.9   0.0    3.2  3  PHM7_cyt         Cytosolic domain of 10TM putative phosphate 
     0.0095   15.9   0.3        2.8    8.0   0.1    2.3  2  DbpA             DbpA RNA binding domain
  ------ inclusion threshold ------
      0.027   13.9   0.1       0.04   13.3   0.1    1.2  1  Vac7             Vacuolar segregation subunit 7
      0.034   14.4   0.0        1.1    9.5   0.0    2.3  2  RRM_8            RRM-like domain
      0.038   13.8   0.0         11    6.0   0.0    3.1  3  RRM_occluded     Occluded RNA-recognition motif
       0.15   12.2   0.0        1.1    9.4   0.0    2.1  2  DUF4783          Domain of unknown function (DUF4783)
       0.88   10.2   9.9       0.43   11.2   4.5    2.2  2  FXMRP1_C_core    Fragile X-related 1 protein core C terminal


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   6.5e-19   1.2e-15       1      69 [.      35     103 ..      35     104 .. 0.95
   2 !   46.5   0.1   1.3e-15   2.4e-12       1      69 [.     202     283 ..     202     284 .. 0.81

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 6.5e-19
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 l++gnL++ +te eLk++F+ ++   s +++ + +t+++ g+afV+ +s  dAekA+++l gk++  r++
  KKY16568.1  35 LYIGNLAYATTEGELKKFFEAYEVE-STSIPVNpRTNRPVGYAFVDLKSATDAEKAISELSGKEILERKV 103
                 8*********************877.99999999*******************************99986 PP

  == domain 2  score: 46.5 bits;  conditional E-value: 1.3e-15
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEE.........EEE.....TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksikl.........vrd.....etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 ++V nLp+d+tee+L elF  + p  s+k+         v++     e +k +gf+fV+ es+e+ +kA+e++ngk+++gre+
  KKY16568.1 202 VMVANLPYDLTEEKLQELFAAYQPT-SAKIalrpiprfmVKKlqargEPRKGRGFGFVTLESEEQQQKAVEEMNGKQIEGREI 283
                 689******************9988.44331122222213336888889999*****************************98 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.026        46       2      41 ..      33      72 ..      32     105 .. 0.85
   2 !   16.0   0.0   5.5e-06    0.0099       2      72 ..     200     275 ..     199     294 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.026
       RRM_7  2 rkvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkk 41
                r++++G l    te elk+ f+++   +   P ++++++ 
  KKY16568.1 33 RRLYIGNLAYATTEGELKKFFEAYEVESTSIPVNPRTNRP 72
                7899********************9999999998887654 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 5.5e-06
       RRM_7   2 rkvFvGGlPiDiteeelkatfkefgkvlvdwPkk.....aeskkkaaenskaakgyvflvfedeksvkaLleacte 72 
                  kv v  lP D+tee+l++ f ++ +++     +       +k +a+ + +  +g+ f+  e+e+  ++ +e+ + 
  KKY16568.1 200 TKVMVANLPYDLTEEKLQELFAAYQPTSAKIALRpiprfMVKKLQARGEPRKGRGFGFVTLESEEQQQKAVEEMNG 275
                 69**********************9988776555443324344444445666789999999999988888877655 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00031      0.56      65     103 ..      74     112 ..      69     126 .. 0.89
   2 ?    2.9   0.0     0.043        77      18      52 ..     191     224 ..     173     233 .. 0.75
   3 !    5.1   0.0    0.0087        16      67      98 ..     256     287 ..     250     295 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00031
       RRM_5  65 etalvqmgdasaveravqHLnnaklfgkrlevalSKqqa 103
                 ++a+v++ +a+++e+a++ L+++++ ++++ v+l ++ +
  KKY16568.1  74 GYAFVDLKSATDAEKAISELSGKEILERKVSVQLARKPE 112
                 79******************************9998765 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.043
       RRM_5  18 pgaagvaegsVllVyglepdkvnldklFnlfclYg 52 
                 p   g ++ + ++V +l  d ++ +kl  lf+ Y 
  KKY16568.1 191 PPEDGIPSKTKVMVANLPYD-LTEEKLQELFAAYQ 224
                 56789999999*****9665.78899999999996 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0087
       RRM_5  67 alvqmgdasaveravqHLnnaklfgkrleval 98 
                  +v + ++ + ++av+ +n++++ g+++ v++
  KKY16568.1 256 GFVTLESEEQQQKAVEEMNGKQIEGREIAVKV 287
                 578889999*****************999987 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0      0.01        19     102     169 ..      48     111 ..      41     114 .. 0.64
   2 !    5.9   0.0    0.0074        13       4      31 ..     202     228 ..     199     234 .. 0.90
   3 ?    3.2   0.0     0.052        94     112     140 ..     242     271 ..     235     291 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.01
    PHM7_cyt 102 kleeldeeieeerekv.....kkkplgaaFvtfesersaaavakqakcaaqiqqssnptlkpkkwtvelAPeP 169
                 +l++  e +e e +++     +++p g+aFv  +s  +a+++++         + s +++  +k++v+lA +P
  KKY16568.1  48 ELKKFFEAYEVESTSIpvnprTNRPVGYAFVDLKSATDAEKAIS---------ELSGKEILERKVSVQLARKP 111
                 5555556666666665556556789**********999999963.........22333332356667766333 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0074
    PHM7_cyt   4 vlvtgiPkelrseeklkeffeelypgkv 31 
                 v+v ++P +l+ eekl+e+f  ++p++ 
  KKY16568.1 202 VMVANLPYDLT-EEKLQELFAAYQPTSA 228
                 9**********.99********999875 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.052
    PHM7_cyt 112 eerekv.kkkplgaaFvtfesersaaavak 140
                 +++++    k +g +Fvt ese++ +++++
  KKY16568.1 242 KLQARGePRKGRGFGFVTLESEEQQQKAVE 271
                 5555531456699************99975 PP

>> DbpA  DbpA RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0073        13      41      71 ..      75     106 ..      74     107 .. 0.86
   2 !    8.0   0.1    0.0016       2.8      48      71 ..     263     286 ..     253     287 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0073
                 -EEEEE-.TT-HHHHHHHHTT--SSS----EE CS
        DbpA  41 fSfvevp.kekaeevlkalkkkkikGrkvrve 71 
                 ++fv+++ + +ae++++ l++k+i  rkv v+
  KKY16568.1  75 YAFVDLKsATDAEKAISELSGKEILERKVSVQ 106
                 78888862579******************986 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0016
                 TT-HHHHHHHHTT--SSS----EE CS
        DbpA  48 kekaeevlkalkkkkikGrkvrve 71 
                 +e+ +++++ +++k+i+Gr++ v+
  KKY16568.1 263 EEQQQKAVEEMNGKQIEGREIAVK 286
                 567889***************986 PP

>> Vac7  Vacuolar segregation subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.3e-05      0.04     135     251 ..      99     214 ..      78     218 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.3e-05
        Vac7 135 vagkksmKFsnttynssaldsdseesdegkkrsrgegsgrgtarhhhigrygrkaknghsslfdeespftqaqksrakklsrqssrpksprssass.sr 232
                  + k s+  + +++   a d+++ e d+++kr++g+g grg  r   +gr gr+   g ++   e  p t+ +++ ++++ +++++p+ p++      +
  KKY16568.1  99 LERKVSVQLARKPEP--AGDKTEGEGDAKAKRGSGRGRGRGRGRGGRLGRGGRTGATGEATEAAETLPLTEKTNEANAEAPKEAKAPRPPKQRGPPeDG 195
                 455556666665533..4566666777777889899999999998889999995555555555566788877777677767777777777766554233 PP

        Vac7 233 ktasskkkkeeasydldae 251
                    ++k +  + +ydl +e
  KKY16568.1 196 IPSKTKVMVANLPYDLTEE 214
                 3344444555566888655 PP

>> RRM_8  RRM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00061       1.1       6      77 ..      26     100 ..      21     109 .. 0.80
   2 ?    2.4   0.0       0.1   1.8e+02      13      41 ..     200     228 ..     192     237 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00061
       RRM_8   6 ggdsgavLrvtvshilYpvtsevLhqvYdaYGavavqvLavstwq...vealvsflsshDaerarsathgrniYD 77 
                 ++ +++  r+ + ++ Y  t+  L++ ++aY  ++  + +    +     a v   s++Dae+a s   g++i +
  KKY16568.1  26 AASAAEGRRLYIGNLAYATTEGELKKFFEAYEVESTSIPVNPRTNrpvGYAFVDLKSATDAEKAISELSGKEILE 100
                 5566667788899999****************99999987544331215799******************99976 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.1
       RRM_8  13 LrvtvshilYpvtsevLhqvYdaYGavav 41 
                  +v v+++ Y  t+e L+  + aY   + 
  KKY16568.1 200 TKVMVANLPYDLTEEKLQELFAAYQPTSA 228
                 5799*****************99976655 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0061        11      41      69 ..      76     104 ..      33     108 .. 0.83
   2 ?   -0.9   0.0      0.83   1.5e+03       6      36 ..     204     234 ..     200     235 .. 0.85
   3 ?    3.7   0.0     0.032        57      42      69 ..     257     284 ..     253     287 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0061
  RRM_occluded  41 AivefkdekiagkasLaLdgsefegkklr 69 
                   A+v +k++++a ka+ +L g+e+ ++k++
    KKY16568.1  76 AFVDLKSATDAEKAISELSGKEILERKVS 104
                   99*********************988876 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.83
  RRM_occluded   6 llplsDtvnkariralveekegeikkivLvp 36 
                   + +l+   +++++++l+  ++    ki L+p
    KKY16568.1 204 VANLPYDLTEEKLQELFAAYQPTSAKIALRP 234
                   6789999999999999999988888999987 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.032
  RRM_occluded  42 ivefkdekiagkasLaLdgsefegkklr 69 
                   +v +++e++  ka+ +++g+++eg+++ 
    KKY16568.1 257 FVTLESEEQQQKAVEEMNGKQIEGREIA 284
                   58899999999**************996 PP

>> DUF4783  Domain of unknown function (DUF4783)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00064       1.1      39      79 ..      44      85 ..      16      95 .. 0.89
   2 ?    0.1   0.0       0.5   8.9e+02      41      59 ..     213     231 ..     209     268 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00064
     DUF4783 39 qAeqilkdFFkknppksfkikhkgkske.skyaigtlttang 79
                + e  lk+FF+ ++++s +i  +  +++ + ya + l++a+ 
  KKY16568.1 44 TTEGELKKFFEAYEVESTSIPVNPRTNRpVGYAFVDLKSATD 85
                567779**************999999999********99876 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.5
     DUF4783  41 eqilkdFFkknppksfkik 59 
                 e++l++ F+ ++p+s ki 
  KKY16568.1 213 EEKLQELFAAYQPTSAKIA 231
                 6789999999999999875 PP

>> FXMRP1_C_core  Fragile X-related 1 protein core C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   4.5   0.00024      0.43      46     111 ..     116     181 ..     101     197 .. 0.60
   2 ?    1.7   0.2       0.2   3.6e+02      62      99 ..     242     279 ..     237     309 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00024
  FXMRP1_C_core  46 DeesgessssslggsrsysgRGrGrRGagatsgkygtnseasnaseteseakdelsdwslageeee 111
                    D+++ge+  + ++gs    gRGrGr G+    g  g+  ea  a et    +++ +    a++e +
     KKY16568.1 116 DKTEGEGDAKAKRGSGRGRGRGRGRGGRLGRGGRTGATGEATEAAETLPLTEKTNEANAEAPKEAK 181
                    444444444444443323345555544444444778888888888887766666666666666654 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.2
  FXMRP1_C_core  62 sysgRGrGrRGagatsgkygtnseasnaseteseakde 99 
                    + ++RG  r+G+g +  + ++++++++a e+++ ++ e
     KKY16568.1 242 KLQARGEPRKGRGFGFVTLESEEQQQKAVEEMNGKQIE 279
                    56789999999999888666666666666666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.51
# Mc/sec: 1855.79
//
Query:       KKY16569.1  [L=211]
Description: putative protein kinase domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.2e-16   58.3   0.0      9e-16   58.0   0.0    1.1  1  Pkinase      Protein kinase domain
    9.3e-05   21.8   0.0    0.00013   21.3   0.0    1.2  1  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0     1e-19     9e-16     139     264 .]      49     206 ..      42     206 .. 0.87

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 1e-19
                 E-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.....SHH...HHHTT CS
     Pkinase 139 itDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.....etkeklpease 232
                 ++DFGla+    +s  ++ +  + Y+APEvl + + s ++D+W +G +++ +++ k++f + +  +++ ++  ++ +++  lg            e+se
  KKY16569.1  49 LSDFGLARFEGGNS--DDDIQPEIYRAPEVLLDMDWSYSADIWNIGAMIWDIFYDKHLFDAYDPITNKLSNKYHISEMAAYLGpppqrF-----LEKSE 140
                 89******988876..999999**************************************88877777777777888888888654431.....33333 PP

                 S..................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 233 i..................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                                                    +e+++++++++l++d ++Rlta+ell++p+l
  KKY16569.1 141 TswkyfdrsgrlitgidltdklsleareewfdgekKEQFLNFIRSMLRWDLNDRLTAHELLDDPWL 206
                 345666888********************************************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.5e-08   0.00013     144     201 ..      49     101 ..      45     128 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.5e-08
                  E-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTT CS
  Pkinase_Tyr 144 isDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftl 201
                  +sDfGLar         ++++   p  + apE+l ++  + ++D+W  G ++w if  
   KKY16569.1  49 LSDFGLARFE-----GGNSDDDIQPEIYRAPEVLLDMDWSYSADIWNIGAMIWDIFYD 101
                  69******87.....566777889999****************************974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1546.74
//
Query:       KKY16599.1  [L=72]
Description: hypothetical protein UCRPC4_g05857 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0045   17.6  11.4      0.005   17.4  11.4    1.1  1  Mak16            Mak16 protein C-terminal region
  ------ inclusion threshold ------
      0.028   14.4   3.9      0.028   14.5   3.9    1.1  1  RXT2_N           RXT2-like, N-terminal
      0.058   11.5  16.2      0.055   11.6  16.2    1.0  1  DNA_pol_phi      DNA polymerase phi
      0.081   13.1  11.7      0.086   13.0  11.7    1.1  1  DUF2052          Coiled-coil domain containing protein (DUF20
       0.09   13.5   8.7      0.096   13.4   8.7    1.1  1  FYDLN_acid       Protein of unknown function (FYDLN_acid)
      0.095   11.6  16.6        0.1   11.5  16.6    1.0  1  Radial_spoke     Radial spokehead-like protein
        0.1   12.2   7.6       0.12   12.1   7.6    1.2  1  FAM176           FAM176 family
       0.11   13.4  14.1       0.15   13.0  14.1    1.2  1  WRNPLPNID        Putative WW-binding domain and destruction b
       0.26   11.2   1.6       0.27   11.1   1.6    1.0  1  CSRNP_N          Cysteine/serine-rich nuclear protein N-termi
       0.33   10.3  11.1       0.33   10.3  11.1    1.0  1  Nop53            Nop53 (60S ribosomal biogenesis)
       0.41   10.0  11.6        0.4   10.0  11.6    1.1  1  DUF4746          Domain of unknown function (DUF4746)
       0.42   11.1   9.5       0.45   11.0   9.5    1.2  1  MPP6             M-phase phosphoprotein 6
       0.42   10.3   4.7       0.46   10.2   4.7    1.0  1  TFB6             Subunit 11 of the general transcription fact
       0.48    8.6  14.3       0.48    8.6  14.3    1.0  1  Nop14            Nop14-like family
       0.53    9.2  13.7       0.52    9.3  13.7    1.0  1  Paf1             Paf1
       0.62    9.7   8.8       0.68    9.5   8.8    1.1  1  CAC1F_C          Voltage-gated calcium channel subunit alpha,
       0.65    9.3   8.5       0.65    9.3   8.5    1.0  1  BUD22            BUD22
       0.87    9.4  15.1       0.97    9.3  15.1    1.1  1  Sigma70_ner      Sigma-70, non-essential region
        1.1    9.2  25.6        1.1    9.2  25.6    1.1  1  Merozoite_SPAM   Merozoite surface protein (SPAM)
        1.2    9.8   2.5        1.4    9.6   2.5    1.2  1  OAD_gamma        Oxaloacetate decarboxylase, gamma chain
        1.2    9.6  19.4        1.7    9.0  19.4    1.3  1  CENP-B_dimeris   Centromere protein B dimerisation domain
        1.2    8.5  12.9        1.2    8.5  12.9    1.0  1  SDA1             SDA1
        1.3    8.1   8.5        1.3    8.1   8.5    1.0  1  TRAP_alpha       Translocon-associated protein (TRAP), alpha 
        1.5    7.4   8.9        1.5    7.4   8.9    1.0  1  Med17            Subunit 17 of Mediator complex
        1.7    7.9  13.5        1.8    7.8  13.5    1.0  1  NOA36            NOA36 protein
        1.9    8.3   6.5        2.3    8.1   6.5    1.1  1  TLP-20           Nucleopolyhedrovirus telokin-like protein-20
        2.1    7.4  22.0        2.3    7.2  22.0    1.0  1  DUF2457          Protein of unknown function (DUF2457)
        2.3    6.4  11.9        2.4    6.3  11.9    1.0  1  CDC45            CDC45-like protein
        2.6    8.3  21.4        2.7    8.2  21.4    1.1  1  RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc3
        2.7    7.1  14.8        2.7    7.1  14.8    1.0  1  Astro_capsid_p   Turkey astrovirus capsid protein
        2.7    7.6  20.6        3.1    7.4  20.6    1.1  1  BSP_II           Bone sialoprotein II (BSP-II)
        2.8    8.4   7.2          3    8.3   7.2    1.1  1  GOLD_2           Golgi-dynamics membrane-trafficking
        3.2    7.5  11.4        3.6    7.3  11.4    1.1  1  Pox_Ag35         Pox virus Ag35 surface protein
        5.3    4.7   7.9        5.4    4.7   7.9    1.0  1  PI3K_1B_p101     Phosphoinositide 3-kinase gamma adapter prot
        7.5    6.2  15.5        8.6    6.1  15.5    1.1  1  DUF4637          Domain of unknown function (DUF4637)
        8.3    5.2  12.5        8.6    5.1  12.5    1.0  1  HSP90            Hsp90 protein


Domain annotation for each model (and alignments):
>> Mak16  Mak16 protein C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4  11.4     1e-05     0.005      41      87 ..      14      63 ..       5      68 .. 0.43

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1e-05
       Mak16 41 iynveekafkkvlekeeeeeeeeeeeeeeeeeeeeeeeee.....geveyve 87
                ++ ++e      +e+eeeeeeeeeeeeeeeeeeeeee  +     ++ e+v+
  KKY16599.1 14 LLILPEARVAAFVEEEEEEEEEEEEEEEEEEEEEEEE--DvddelDDPEFVS 63
                5555666666666555422222222222222222211..1122345555555 PP

>> RXT2_N  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   3.9   5.6e-05     0.028      55      86 ..      29      56 ..       3      71 .. 0.41

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.6e-05
      RXT2_N 55 kekekeekeeeeedeegdeededdddeeeaea 86
                +e+e+ee+eeeee+ee++ee+ed     ++e 
  KKY16599.1 29 EEEEEEEEEEEEEEEEEEEEEEDV----DDEL 56
                111111111111111111111111....2222 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  16.2   0.00011     0.055     639     672 ..      27      58 ..       6      66 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
  DNA_pol_phi 639 edededeeddeeeeeeddeededseedddeeesd 672
                  e  +e+ee++eeeeee++ee+e++eed d+e +d
   KKY16599.1  27 E--EEEEEEEEEEEEEEEEEEEEEEEDVDDELDD 58 
                  2..2222222222222222222222333333222 PP

>> DUF2052  Coiled-coil domain containing protein (DUF2052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0  11.7   0.00017     0.086      74     107 ..      26      51 ..       3      65 .. 0.39

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00017
     DUF2052  74 leaqqeeleeeeeeeeeeeeeeeeeeeeeeedek 107
                 +e+++ee       eeeeeee eeeeeeeee+e+
  KKY16599.1  26 VEEEEEE-------EEEEEEE-EEEEEEEEEEED 51 
                 2222222.......1111111.111111111111 PP

>> FYDLN_acid  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   8.7   0.00019     0.096      50      81 ..      28      55 ..       7      66 .. 0.39

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00019
  FYDLN_acid 50 eaeeakkkkeeeedeedeeeeedvsdedadee 81
                e+e    ++eeee+ee+eeeee++++ed+d+e
  KKY16599.1 28 EEE----EEEEEEEEEEEEEEEEEEEEDVDDE 55
                111....1111111111111111111111111 PP

>> Radial_spoke  Radial spokehead-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5  16.6   0.00021       0.1     342     382 ..      12      50 ..      10      65 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00021
  Radial_spoke 342 hspyilkqGrvtwvnpekeeeeeeeeeeeeeeeeeeeeepE 382
                   h+  il++ rv  + +e+eeeeeeeeeeeee eeeeeee E
    KKY16599.1  12 HELLILPEARVAAFVEEEEEEEEEEEEEEEE-EEEEEEE-E 50 
                   5567999999999986544333333333332.2222222.2 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   7.6   0.00024      0.12      64      92 ..      28      56 ..      11      69 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00024
      FAM176 64 esekasededeeeeeeeedsseseaeeel 92
                e+e+++e+e+eeeeeeee+++e+++++el
  KKY16599.1 28 EEEEEEEEEEEEEEEEEEEEEEEDVDDEL 56
                33333444444444444444445545544 PP

>> WRNPLPNID  Putative WW-binding domain and destruction box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0  14.1    0.0003      0.15      19      60 ..      13      54 ..       7      62 .. 0.41

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.0003
   WRNPLPNID 19 eLeeLllldse....aeessegesvdedeeaeeeeeeeeeeedeed 60
                eL  L l++++     ee++e+e  +e+ee+eeeeeeeeeeed +d
  KKY16599.1 13 EL--LILPEARvaafVEEEEEEE--EEEEEEEEEEEEEEEEEDVDD 54
                55..3444444756533333322..222222222222222222222 PP

>> CSRNP_N  Cysteine/serine-rich nuclear protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.6   0.00054      0.27      78     119 ..      28      67 ..       7      70 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00054
     CSRNP_N  78 lsssdlleeeeeealevddisdedldseaelddylflqplst 119
                 ++++++ eeeeee+ e ++ ++ed+d  +eldd  f+  +++
  KKY16599.1  28 EEEEEEEEEEEEEEEEEEEEEEEDVD--DELDDPEFVSEIPV 67 
                 22333333333333444445555555..99999999888775 PP

>> Nop53  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  11.1   0.00066      0.33     230     258 ..      27      53 ..       9      70 .. 0.39

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00066
       Nop53 230 ataeareeelseekdegleeeeeeeeeee 258
                 +++e++eee++ee++  +eeeeeeee+ +
  KKY16599.1  27 EEEEEEEEEEEEEEE--EEEEEEEEEDVD 53 
                 111111111111111..111111111111 PP

>> DUF4746  Domain of unknown function (DUF4746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  11.6   0.00081       0.4     107     132 ..      28      53 ..       5      71 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
     DUF4746 107 aeeeeaeeeeeeeaveeeeeeeeeee 132
                 +eeee+eeeeeee+ eeeeeeee+++
  KKY16599.1  28 EEEEEEEEEEEEEEEEEEEEEEEDVD 53 
                 12222222222222222222222222 PP

>> MPP6  M-phase phosphoprotein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   9.5   0.00089      0.45      84     106 ..      29      55 ..       8      65 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00089
        MPP6  84 vee....kkeeeeeeeekekeedvsde 106
                 +ee    ++eeeeeeee+e+eedv+de
  KKY16599.1  29 EEEeeeeEEEEEEEEEEEEEEEDVDDE 55 
                 221234466666666666666666665 PP

>> TFB6  Subunit 11 of the general transcription factor TFIIH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.7   0.00092      0.46     113     147 ..      26      53 ..      13      68 .. 0.39

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00092
        TFB6 113 lereeeeeeeeedeeededeeeeeeeeeeeeeeed 147
                 +e+eeeeeeeee+eee+e+   eeee    ee+ d
  KKY16599.1  26 VEEEEEEEEEEEEEEEEEE---EEEE----EEDVD 53 
                 3333222222211111111...1111....11111 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  14.3   0.00097      0.48     368     406 ..      28      57 ..      13      69 .. 0.41

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00097
       Nop14 368 eeeeeeeedeeeeedeeeeeeeeededdlsdleseeeee 406
                 eee eeee+eeeee+eeeeeeeeed dd        e +
  KKY16599.1  28 EEE-EEEEEEEEEEEEEEEEEEEEDVDD--------ELD 57 
                 111.111111111111111112222222........122 PP

>> Paf1  Paf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  13.7     0.001      0.52     364     395 ..      27      55 ..       6      64 .. 0.48

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.001
        Paf1 364 keeeeeeeeeeeeekseeeeekeeekeeaeee 395
                 +eeeeeeeeeeee   eeeee+eee+e++++e
  KKY16599.1  27 EEEEEEEEEEEEE---EEEEEEEEEEEDVDDE 55 
                 2222222222222...2333333333333333 PP

>> CAC1F_C  Voltage-gated calcium channel subunit alpha, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   8.8    0.0014      0.68      11      43 ..      18      50 ..      15      71 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0014
     CAC1F_C 11 PEmRlAlaedleeeeeeaeleeeeedleasaap 43
                PE R A  ++ eeeeee+e+eeeee++e++++ 
  KKY16599.1 18 PEARVAAFVEEEEEEEEEEEEEEEEEEEEEEEE 50
                99**99888877766655555544444444333 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   8.5    0.0013      0.65     174     199 ..      29      54 ..       9      67 .. 0.43

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0013
       BUD22 174 esedsedeekeeseddeeeeeededd 199
                 e+e++e+ee+ee+e++eeeeeed dd
  KKY16599.1  29 EEEEEEEEEEEEEEEEEEEEEEDVDD 54 
                 11111110111111111111111111 PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  15.1    0.0019      0.97      27      71 ..      23      60 ..      17      69 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0019
  Sigma70_ner 27 dGflDeeeeeeeeeeeedeeeeeeeedddeeeseseaadeeelke 71
                  +f++eeeeeeeeeeee+eeeeeeee++d        +de  ++e
   KKY16599.1 23 AAFVEEEEEEEEEEEEEEEEEEEEEEEED-------VDDELDDPE 60
                 56788544444444444444444444444.......333333333 PP

>> Merozoite_SPAM  Merozoite surface protein (SPAM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2  25.6    0.0023       1.1      49      85 ..      27      58 ..       9      66 .. 0.48

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0023
  Merozoite_SPAM 49 eedleekedeeeEteeeeteekneeeieeetedeedE 85
                    ee++ e+e+eeeE+eeee+ee++ee+    ++de d+
      KKY16599.1 27 EEEE-EEEEEEEEEEEEEEEEEEEED----VDDELDD 58
                    2211.122222222223333333333....3443333 PP

>> OAD_gamma  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.5    0.0028       1.4      37      65 ..      28      56 ..      15      65 .. 0.45

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0028
   OAD_gamma 37 kkkkkkakaaaaaaaaaaaaaeldddeel 65
                +++++++++++++++++++++e+d d+el
  KKY16599.1 28 EEEEEEEEEEEEEEEEEEEEEEEDVDDEL 56
                22222222222222222222233444443 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  19.4    0.0035       1.7       5      40 ..      25      60 ..      19      70 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0035
  CENP-B_dimeris  5 lleagedsesesdeeeeeeeedeededeeddeddde 40
                    ++e  e+ e e +eeeeeeee+ee+ed +d+ dd e
      KKY16599.1 25 FVEEEEEEEEEEEEEEEEEEEEEEEEDVDDELDDPE 60
                    555555555555555555555554444444444433 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  12.9    0.0024       1.2     137     170 ..      29      53 ..      10      65 .. 0.41

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0024
        SDA1 137 edeeeeeeeeeekeekeeeeeeeeeeeeeeeeee 170
                 e+eeeeeeeeee+ee+eee         eee+++
  KKY16599.1  29 EEEEEEEEEEEEEEEEEEE---------EEEDVD 53 
                 1111111111111111111.........111111 PP

>> TRAP_alpha  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   8.5    0.0027       1.3      45      68 ..      28      51 ..       7      68 .. 0.42

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0027
  TRAP_alpha 45 deeveeeeeeeeeeeeeeeedeee 68
                +ee+eeeeeeeeeeeeeeee+ee+
  KKY16599.1 28 EEEEEEEEEEEEEEEEEEEEEEED 51
                111111111111111111111111 PP

>> Med17  Subunit 17 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   8.9     0.003       1.5      61     100 ..      17      55 ..       5      67 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.003
                 CHHHHHHHCCHHHHHSS-S---GGGTTCHHHHHHHHHGGG CS
       Med17  61 lsEesLreeiekekqqkeekdeeeeeeeeeeekkeDaedk 100
                 l E ++ + +e+e++++ee++e eeeeeeeee++eD++d+
  KKY16599.1  17 LPEARVAAFVEEEEEEEEEEEE-EEEEEEEEEEEEDVDDE 55 
                 6677777777777777765554.58888888888888544 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  13.5    0.0036       1.8     275     301 ..      28      54 ..      12      63 .. 0.46

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0036
       NOA36 275 edddddddeedddeeeddedeeeeeee 301
                 e+++++++ee+++eee++e+eee+ ++
  KKY16599.1  28 EEEEEEEEEEEEEEEEEEEEEEEDVDD 54 
                 222222222222222222222222222 PP

>> TLP-20  Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   6.5    0.0046       2.3     117     153 ..      21      57 ..      15      64 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0046
      TLP-20 117 flsapveksssededdeddededeaakiesnsdsees 153
                 ++ a+ve++++e+e++e++e+e+e+++ e+++d+e +
  KKY16599.1  21 RVAAFVEEEEEEEEEEEEEEEEEEEEEEEEDVDDELD 57 
                 6788997777777777777566666666655555554 PP

>> DUF2457  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  22.0    0.0047       2.3      43      80 ..      23      58 ..      15      65 .. 0.47

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0047
     DUF2457 43 geeaeeEaeeeeeeeeddeedeeddddddddedddedd 80
                +  +eeE eeeeeeee++ee+ee++ ++ +d dd+ dd
  KKY16599.1 23 AAFVEEEEEEEEEEEEEEEEEEEEE-EE-EDVDDELDD 58
                4455666555554433333333332.22.222233332 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  11.9    0.0049       2.4     128     158 ..      27      55 ..       9      64 .. 0.40

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0049
       CDC45 128 eeeesdeedeeeeeeddddeeeeeeeeedee 158
                 eeee++ee  eeeee++++eeeeeee+ d+e
  KKY16599.1  27 EEEEEEEE--EEEEEEEEEEEEEEEEDVDDE 55 
                 22222111..111122222222222222221 PP

>> RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  21.4    0.0054       2.7     179     211 ..      27      57 ..       8      60 .. 0.52

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0054
  RNA_pol_3_Rpc31 179 eeeddeeekkekedeeeeeeeeeddefdddde.d 211
                      eee++   ++e+e+eeeeeeeee++e d dde d
       KKY16599.1  27 EEEEE---EEEEEEEEEEEEEEEEEEEDVDDElD 57 
                      22222...22333333333355555555555432 PP

>> Astro_capsid_p  Turkey astrovirus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  14.8    0.0053       2.7     235     266 ..      27      58 ..       6      65 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0053
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Astro_capsid_p 235 sdpsdeedeevsdeetdtevesdeDeddevdr 266
                      ++++ee+ee ++ee+++e e++eD dde d+
      KKY16599.1  27 EEEEEEEEEEEEEEEEEEEEEEEEDVDDELDD 58 
                     23344444566777778888888888888887 PP

>> BSP_II  Bone sialoprotein II (BSP-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  20.6    0.0062       3.1     131     157 ..      28      54 ..      15      61 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0062
      BSP_II 131 tkeeesdeeeeeeeeeeneeeeaevde 157
                 ++eee++eeeeeeeeee+eeee++vd+
  KKY16599.1  28 EEEEEEEEEEEEEEEEEEEEEEEDVDD 54 
                 233444444444446677777778887 PP

>> GOLD_2  Golgi-dynamics membrane-trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   7.2    0.0061         3      45      85 ..      20      60 ..      11      69 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0061
      GOLD_2 45 kavsvkvsesddeedeeeeeeeekveeedvekgsvkaakpr 85
                  v+  v+e ++ee+eeeeeeee+ eee+ e    + + p+
  KKY16599.1 20 ARVAAFVEEEEEEEEEEEEEEEEEEEEEEEEDVDDELDDPE 60
                56777788877777777777766666666666655555554 PP

>> Pox_Ag35  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  11.4    0.0072       3.6      74     101 ..      28      55 ..      17      67 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0072
    Pox_Ag35  74 eekeeaaeeeeledseedeenendedes 101
                 ee+ee++eeee e++ee+ee+e+d+d+ 
  KKY16599.1  28 EEEEEEEEEEEEEEEEEEEEEEEDVDDE 55 
                 3333444444444444444444444443 PP

>> PI3K_1B_p101  Phosphoinositide 3-kinase gamma adapter protein p101 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   7.9     0.011       5.4     309     336 ..      24      51 ..      12      69 .. 0.42

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.011
  PI3K_1B_p101 309 speeledeeeedeedvdeeedleeeeee 336
                   +  e+e+eeee+ee+ +eee+ eeeee+
    KKY16599.1  24 AFVEEEEEEEEEEEEEEEEEEEEEEEED 51 
                   3333333333333322222222222211 PP

>> DUF4637  Domain of unknown function (DUF4637)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  15.5     0.017       8.6      17      39 ..      29      51 ..      18      67 .. 0.38

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.017
     DUF4637 17 veeeeaeeeseeedeeedraeee 39
                +eeee+eee+eee+eee+++ee+
  KKY16599.1 29 EEEEEEEEEEEEEEEEEEEEEED 51
                11111111111111111111111 PP

>> HSP90  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  12.5     0.017       8.6      31      58 ..      28      55 ..      13      66 .. 0.44

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.017
                XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       HSP90 31 eekeveeeeeeeeeeeeeeeeeakveee 58
                ee+e+eeeeeeeeeeeeeeeee++v++e
  KKY16599.1 28 EEEEEEEEEEEEEEEEEEEEEEEDVDDE 55
                2222222222222222223333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2140  (0.11936); expected 358.6 (0.02)
Passed bias filter:                     1165  (0.0649785); expected 358.6 (0.02)
Passed Vit filter:                       324  (0.0180713); expected 17.9 (0.001)
Passed Fwd filter:                        55  (0.00306766); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              36  [number of targets reported over threshold]
# CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 481.18
//
Query:       KKY16600.1  [L=396]
Description: putative aspartic-type endopeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-51  173.3   1.0    1.1e-50  172.9   0.6    1.4  2  Asp              Eukaryotic aspartyl protease
    2.1e-11   44.4   0.1    2.4e-07   31.1   0.1    2.6  2  TAXi_N           Xylanase inhibitor N-terminal
  ------ inclusion threshold ------
      0.011   16.3   1.6         26    5.6   0.1    3.5  3  Asp_protease_2   Aspartyl protease
       0.11   11.3   0.9       0.21   10.4   0.1    1.8  2  DUF3443          Protein of unknown function (DUF3443)
       0.13   12.8   0.3         24    5.6   0.0    3.4  2  gag-asp_proteas  gag-polyprotein putative aspartyl protease


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       2.1   7.5e+03     106     122 ..      25      41 ..      14      44 .. 0.73
   2 !  172.9   0.6   2.9e-54   1.1e-50       2     296 ..      67     396 .]      66     396 .] 0.80

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2.1
                 SSEEEE-S-GGGSCGGS CS
                 xxxxxxxxxxxxxxxxx RF
         Asp 106 fdGiLGlgfkeisveea 122
                  + +LGl+f++ +v + 
  KKY16600.1  25 SSKVLGLSFEKKDVADK 41 
                 55689999998887665 PP

  == domain 2  score: 172.9 bits;  conditional E-value: 2.9e-54
                 EEEEEEETTTTEEEEEEEETT--SEEEEBTT...ESTSHC...HHTSS-B-GGG-TT-E.EEEEEEEEECTTS.EEEEEEEEEEEEETTEEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxx...xxxxxxxxxxxxxxxx.xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   2 YfgeisiGtpeqkftvifDTGSsdlWVpssk...ckkssa...ckshstydpskSstyk.kngkslsisYGdg.svsGflsqdtvkvggltvknqefge 92 
                 Y+ +is+Gtp q+f v++DTGSsdlWV s +   c+  s+      + t+d+s+Sst+    +  ++i+Y  g s  G +++dt  +gg+t+ + +fg+
  KKY16600.1  67 YYVNISLGTPAQEFAVVLDTGSSDLWVLSDEapiCS--SDpsyYCPYGTFDASESSTFVeILEGGFNITYLLGnSDIGNIVNDTLRIGGITLDQTTFGL 163
                 9******************************66644..4422234589*********994578899*******9999********************** PP

                 EEEESSHHHTTSSSSEEEE-S-GGGSCGG.....SCCH.HHHHHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGEEEEEEEEEESSTSS......T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......x RF
         Asp  93 atkepgstflaakfdGiLGlgfkeisvee.....atpv.fdnlvsqglikepvfsvylnreeeeggeivfGgvDeskykGsltyvpvtskgy......w 179
                 +t + +     +++ G++G+g+ + ++       + p+ ++ l+++g+i++ +fs++l++  +++g+++fGg+D++ky+G+l+++p+ ++ y      +
  KKY16600.1 164 VTDAAS-----SDNMGVMGIGYVAGESTIeqddaIYPNfVQSLYDRGIIESRAFSLWLDNLTAKTGTVLFGGIDTTKYTGDLVAIPIHKDVYsgvidsY 257
                 ***999.....5899******976544332333444443444***********************************************544444667* PP

                 EEEEEEEEETTEEE....EEEEEEEEE.........EETTCSSEEEEHHHHHHHHHHHTTEEEET...TCEEEEETTGGGGSEEEEEEE..TTEEEEEE CS
                 xxxxxxxxxxxxxx....xxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx..xxxxxxxx RF
         Asp 180 qielesvtvggktv....lcssgcqai.........lDtGTsllalptsivekiakaigakkses...egeyvvdCdslsslpdisfti..ggakitvp 260
                 ++ l+s+t++++++    +     + i         lD+GT+ ++lp++ ++++   +ga+       + + ++ C+  +s++ ++f +   g  i+vp
  KKY16600.1 258 DVPLTSITFQTDSSsdpsS-----NFIdgssivpvsLDSGTTSIILPNDLASALYLGFGATVPDAafgNTTAILPCSIGESSSVFNFGFsgTGPLISVP 351
                 **********999945441.....333444556778************************9887766678999*****999999999995455679*** PP

                 GGGGE..........EEESSSTTSEEEESEEECCTSSSEEEEHHHH CS
                 xxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 261 vselv..........lkeeeseesqCilglvseeegdlwiLGdvFl 296
                  se++          l++ +++  +C l++    +g   +LGd Fl
  KKY16600.1 352 ISEFIlpltdnygnpLSDPSTNVPICQLAI-DFANGGPSLLGDSFL 396
                 ***993322222222233334456888888.555666678898887 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.1   6.8e-11   2.4e-07       1      53 [.      67     124 ..      67     128 .. 0.87
   2 !   10.8   0.0   0.00012      0.42      82     178 .]     131     230 ..     126     230 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 6.8e-11
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpcka.....cssqkkpvfdpsksstyka 53 
                 Y+v+is+Gtp+q++ +v+DtGs+ +Wv  +         ++ ++ ++fd s+sst+ +
  KKY16600.1  67 YYVNISLGTPAQEFAVVLDTGSSDLWVLSDEAPIcssdpSYYCPYGTFDASESSTFVE 124
                 9**************************99644335578888999999******99965 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00012
      TAXi_N  82 eisygadgssssGvlatdtltlsstdgksvkvpnlvfGCgksnlgglaagadGilGLGrgk............lSlvsqlaskg.slgnkFsyCLssss 167
                 +i+y   g s  G++++dtl++     +++++++ +fG ++       ++  G++G G+ +              +v+ l  +g + +++Fs+ L ++ 
  KKY16600.1 131 NITYL-LGNSDIGNIVNDTLRI-----GGITLDQTTFGLVT---DAASSDNMGVMGIGYVAgestieqddaiyPNFVQSLYDRGiIESRAFSLWL-DNL 219
                 56775.566999**********.....899*********99...34444579******97767888888888878888888888566789*****.999 PP

      TAXi_N 168 ssssgvlffGd 178
                 + ++g ++fG+
  KKY16600.1 220 TAKTGTVLFGG 230
                 99999999996 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.033   1.2e+02       8      23 ..      78      93 ..      68      98 .. 0.74
   2 ?    4.3   0.1     0.018        64      53      87 ..     141     177 ..     131     180 .. 0.71
   3 ?    5.6   0.1    0.0072        26      11      34 ..     286     309 ..     279     323 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.033
  Asp_protease_2  8 kpvrfllDTGasttli 23
                    +++ ++lDTG+s + +
      KKY16600.1 78 QEFAVVLDTGSSDLWV 93
                    57899*******8644 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.018
  Asp_protease_2  53 arlvrldslklggltlknvpalvldlgeeid..glLG 87 
                        ++ d+l++gg+tl++ ++  + + +++d  g++G
      KKY16600.1 141 IGNIVNDTLRIGGITLDQTTFGLVTDAASSDnmGVMG 177
                     55667789***********996665455554335555 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0072
  Asp_protease_2  11 rfllDTGasttlispelaeklglk 34 
                      + lD+G ++++++++la +l l 
      KKY16600.1 286 PVSLDSGTTSIILPNDLASALYLG 309
                     6779****************9775 PP

>> DUF3443  Protein of unknown function (DUF3443)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   5.7e-05      0.21     254     294 ..      78     117 ..      34     145 .. 0.69
   2 ?   -1.9   0.1      0.32   1.1e+03     248     273 ..     276     301 ..     260     310 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.7e-05
     DUF3443 254 ktfassfiDsGsnglffadtslpkcsskasfYcpsselsls 294
                 ++    ++D+Gs+ l   +   p css  s+Ycp  + + s
  KKY16600.1  78 QE-FAVVLDTGSSDLWVLSDEAPICSSDPSYYCPYGTFDAS 117
                 22.34569**************************7766544 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.32
     DUF3443 248 ttklkgktfassfiDsGsnglffadt 273
                 +  ++g+++    +DsG++++++++ 
  KKY16600.1 276 SNFIDGSSIVPVSLDSGTTSIILPND 301
                 44568888888999****99998765 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.052   1.9e+02      10      29 ..      80      99 ..      74     180 .. 0.58
   2 ?    5.6   0.0    0.0066        24      10      33 ..     285     308 ..     277     323 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.052
                     EEEEEETT-SS-EEEHHHHH CS
  gag-asp_proteas 10 vkflvDTGAsstiiseelae 29
                     + +++DTG s+  + ++ a 
       KKY16600.1 80 FAVVLDTGSSDLWVLSDEAP 99
                     55666666666555444443 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0066
                      EEEEEETT-SS-EEEHHHHHHTTG CS
  gag-asp_proteas  10 vkflvDTGAsstiiseelaerlgl 33 
                      v + +D+G +s+i++ +la +l l
       KKY16600.1 285 VPVSLDSGTTSIILPNDLASALYL 308
                      56779**************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2830.09
//
Query:       KKY16601.1  [L=1003]
Description: putative armadillo repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-12   46.1   5.6      0.085   12.9   0.2    8.6 10  Arm           Armadillo/beta-catenin-like repeat
     0.0013   19.1   0.3      1e+02    3.6   0.1    5.3  5  HEAT_EZ       HEAT-like repeat
     0.0019   18.3   3.5         49    4.6   0.0    5.9  5  HEAT          HEAT repeat
  ------ inclusion threshold ------
      0.053   13.9   5.4        0.8   10.1   0.2    4.5  4  HEAT_2        HEAT repeats
        0.1   11.8   0.3         61    2.8   0.0    3.8  4  V-ATPase_H_N  V-ATPase subunit H
       0.17   11.0   0.1       0.99    8.4   0.0    2.3  2  IFRD          Interferon-related developmental regulator (IFR


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0057        17       5      23 ..      40      58 ..      35      62 .. 0.77
   2 ?   -1.4   0.0      0.95   2.9e+03       8      30 ..     111     133 ..     105     136 .. 0.81
   3 ?   -3.0   0.1       2.9   8.6e+03      16      33 ..     174     193 ..     172     197 .. 0.79
   4 ?    1.0   0.0      0.16   4.7e+02       5      23 ..     209     227 ..     206     229 .. 0.86
   5 ?    4.7   0.0     0.011        33       1      22 [.     476     497 ..     476     505 .. 0.88
   6 ?    1.0   0.0      0.16   4.7e+02       2      21 ..     561     580 ..     560     588 .. 0.84
   7 !   12.9   0.2   2.9e-05     0.085      10      40 ..     631     661 ..     625     662 .. 0.92
   8 !   11.7   0.0   7.1e-05      0.21       2      39 ..     665     702 ..     664     704 .. 0.94
   9 ?    0.0   0.0      0.33   9.8e+02      10      39 ..     918     947 ..     909     949 .. 0.75
  10 ?   -3.6   0.0       4.5   1.3e+04      17      30 ..     975     988 ..     974     989 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0057
                HHHHHHTTHHHHHHHHTTT CS
         Arm  5 kdavieaGavppLvrLLss 23
                k++ ie+G+vp+L + L++
  KKY16601.1 40 KKVWIEYGIVPILTHILEN 58
                55566********999875 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.95
                 HHHTTHHHHHHHHTTTSSHHHHH CS
         Arm   8 vieaGavppLvrLLssedeevqe 30 
                 v  + ++p+L   Ls++++ +q 
  KKY16601.1 111 VLASSILPRLAYILSTPNCPLQL 133
                 666789************99886 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.9
                 HHHHHTT..TSSHHHHHHHH CS
         Arm  16 pLvrLLs..sedeevqeeAa 33 
                  L +LL+  s+  +vq+++a
  KKY16601.1 174 TLSSLLNqsSPLSSVQHVIA 193
                 68899999888888888776 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.16
                 HHHHHHTTHHHHHHHHTTT CS
         Arm   5 kdavieaGavppLvrLLss 23 
                 k a +eaG++++L + L s
  KKY16601.1 209 KTACVEAGILDILASQLAS 227
                 66899********999875 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.011
                 SHHHHHHHHHTTHHHHHHHHTT CS
         Arm   1 nsenkdavieaGavppLvrLLs 22 
                 ++e  +a ++a a++ L +LL+
  KKY16601.1 476 SPELQKAAVDAHAIKTLANLLK 497
                 688999***************8 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.16
                 HHHHHHHHHTTHHHHHHHHT CS
         Arm   2 senkdavieaGavppLvrLL 21 
                 ++ ++ ++++G++p  v+ L
  KKY16601.1 561 DDYRKSICDQGVIPFIVDSL 580
                 578899********888755 PP

  == domain 7  score: 12.9 bits;  conditional E-value: 2.9e-05
                 HTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  10 eaGavppLvrLLssedeevqeeAawALsNLa 40 
                 +a++ pp  +LL+++d evq +A++ ++NLa
  KKY16601.1 631 DANVAPPIFTLLKNKDIEVQIAATTVVCNLA 661
                 7888999999********************8 PP

  == domain 8  score: 11.7 bits;  conditional E-value: 7.1e-05
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNL 39 
                 s+ k av+  G+++ L++  +  + +++ e+ wAL +L
  KKY16601.1 665 SPMKAAVVTNGVMKTLCEHAHASHARLRLESIWALKHL 702
                 67899******************************998 PP

  == domain 9  score: 0.0 bits;  conditional E-value: 0.33
                 HTTHHHHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm  10 eaGavppLvrLLssedeevqeeAawALsNL 39 
                 +   ++  + L ++++  ++ +++w + NL
  KKY16601.1 918 QTDLLRSIIPLFNHPNRVIRVNCCWIVINL 947
                 555666678889999999*******76665 PP

  == domain 10  score: -3.6 bits;  conditional E-value: 4.5
                 HHHHTTTSSHHHHH CS
         Arm  17 LvrLLssedeevqe 30 
                 L  LL+++d +v+e
  KKY16601.1 975 LAGLLDDDDLDVRE 988
                 6679******9987 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.044   1.3e+02      23      49 ..     458     484 ..     447     486 .. 0.72
   2 ?    1.3   0.0      0.17   5.2e+02       3      33 ..     545     580 ..     543     591 .. 0.70
   3 ?   -4.0   0.0         6   1.8e+04      35      48 ..     640     653 ..     635     654 .. 0.81
   4 ?    3.5   0.0     0.037   1.1e+02      26      54 ..     918     946 ..     896     947 .. 0.72
   5 ?    3.6   0.1     0.034     1e+02      33      50 ..     975     994 ..     961     994 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.044
     HEAT_EZ  23 qplvpeilpaLlalL.nddsdeVRaaAa 49 
                 q++v+e  p Lla L +d s+e ++aA+
  KKY16601.1 458 QLHVKEEAPHLLANLvMD-SPELQKAAV 484
                 668999999999777475.666666666 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.17
     HEAT_EZ   3 vRraAawaLGr.laggepel....lqplvpeilpaL 33 
                  R+++++aL++ +++  +      +q+++p i++ L
  KKY16601.1 545 FREGVLMALASiAPFKDDYRksicDQGVIPFIVDSL 580
                 69*******996555444445555555666665555 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 6
     HEAT_EZ  35 alLnddsdeVRaaA 48 
                  lL++++ eV+ aA
  KKY16601.1 640 TLLKNKDIEVQIAA 653
                 58999999999988 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.037
     HEAT_EZ  26 vpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 ++++l+  ++l n+++  +R ++++   n
  KKY16601.1 918 QTDLLRSIIPLFNHPNRVIRVNCCWIVIN 946
                 5677777777787766666******7655 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.034
     HEAT_EZ  33 LlalLnddsdeV..RaaAag 50 
                 L+ lL dd+ +V  R+++a+
  KKY16601.1 975 LAGLLDDDDLDVreRTKTAW 994
                 7778888888**77777776 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.62   1.8e+03      10      27 ..     396     413 ..     392     415 .. 0.84
   2 ?    3.8   0.0     0.029        86       3      28 ..     636     661 ..     634     663 .. 0.92
   3 ?    3.4   0.0     0.038   1.1e+02       2      29 ..     677     704 ..     676     706 .. 0.90
   4 ?    4.6   0.0     0.016        49       1      27 [.     921     947 ..     921     949 .. 0.88
   5 ?    0.2   0.1      0.42   1.3e+03       5      18 ..     975     988 ..     972     991 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.62
                 T-SSHHHHHHHHHHHHHH CS
        HEAT  10 sDpspeVReaAakaLgal 27 
                 sD+s +VR   ak L +l
  KKY16601.1 396 SDKSIFVRLRGAKILINL 413
                 8*******9999888766 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.029
                 HHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgala 28 
                 P++ +ll+ ++ eV  aA   +++la
  KKY16601.1 636 PPIFTLLKNKDIEVQIAATTVVCNLA 661
                 8999***************9999987 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.038
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                 + +l++  + ++++ R  +++aL +l+ 
  KKY16601.1 677 MKTLCEHAHASHARLRLESIWALKHLVY 704
                 7899*******************99985 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.016
                 HHHHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgal 27 
                 ll  ++ l ++p+  +R ++++ + +l
  KKY16601.1 921 LLRSIIPLFNHPNRVIRVNCCWIVINL 947
                 688999*9*************987766 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.42
                 HHHHHT-SSHHHHH CS
        HEAT   5 llkllsDpspeVRe 18 
                 l  ll D++ +VRe
  KKY16601.1 975 LAGLLDDDDLDVRE 988
                 67899********8 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.93   2.8e+03      32      55 ..     386     410 ..     377     432 .. 0.61
   2 ?   -1.1   0.0      0.83   2.5e+03      36      54 ..     468     486 ..     458     501 .. 0.61
   3 ?   10.1   0.2   0.00027       0.8      21      88 .]     615     700 ..     605     700 .. 0.71
   4 ?    1.8   0.1      0.11   3.2e+02      30      49 ..     969     988 ..     925     994 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.93
      HEAT_2  32 alpaLvell.ededpavRraaaeaL 55 
                 ++ +L+ l+ +d++  vR   a+ L
  KKY16601.1 386 IVSWLIWLIrSDKSIFVRLRGAKIL 410
                 5666666664455556665555544 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.83
      HEAT_2  36 LvellededpavRraaaea 54 
                 L+  l  ++p+ ++aa++a
  KKY16601.1 468 LLANLVMDSPELQKAAVDA 486
                 4444444555555555554 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00027
      HEAT_2  21 iraLg........rignpealpaLvellededpavRraaaeaL...........gaigdpealpaLkellddddddvvReaAaeaLa 88 
                 +r+L         ++++  + p ++ ll+++d +v+ aa +             +a+ ++ + + L+e ++  ++++ R ++++aL+
  KKY16601.1 615 ARTLTrsvsmlrtSLNDANVAPPIFTLLKNKDIEVQIAATTVVcnlaldfspmkAAVVTNGVMKTLCEHAHA-SHARLRLESIWALK 700
                 44444444444466889999********************9873333333333334447999******9976.66667889999995 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.11
      HEAT_2  30 pealpaLvellededpavRr 49 
                  e+++ L  ll+d+d +vR+
  KKY16601.1 969 LEVREKLAGLLDDDDLDVRE 988
                 36777777777777777775 PP

>> V-ATPase_H_N  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.075   2.2e+02     151     201 ..      10      62 ..       7     105 .. 0.74
   2 ?    0.0   0.1      0.14   4.1e+02     153     199 ..     174     225 ..      91     237 .. 0.73
   3 ?    2.8   0.0      0.02        61     265     300 ..     470     501 ..     462     505 .. 0.82
   4 ?    1.6   0.0     0.047   1.4e+02     101     166 ..     630     692 ..     607     759 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.075
  V-ATPase_H_N 151 lqlLssqlssstnevieiavrll.qellrtkeyRelfveadgvstlisilr....s 201
                   l+ L++ +s s++   ++a+++l +el+ +++ +++++e  +v++l +il+    +
    KKY16601.1  10 LAELQNPTSPSNL---NSALVALkNELIGHEQRKKVWIEYGIVPILTHILEnrrgD 62 
                   5555555555544...445554416788888888888889999*******644442 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.14
  V-ATPase_H_N 153 lLssqlss.....stnevieiavrllqellrtkeyRelfveadgvstlisil 199
                    Lss+l++     s   vi+ ++rl+++   +++y+ + vea ++ +l s l
    KKY16601.1 174 TLSSLLNQssplsSVQHVIALTARLISKTCTEEAYKTACVEAGILDILASQL 225
                   3333222233332445566999999999999999999999998888888765 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.02
  V-ATPase_H_N 265 rNllekaeksskelaavmvqvkllkllenLeerkfs 300
                    Nl+       +el +++v+ +++k+l nL +r f+
    KKY16601.1 470 ANLVMDS----PELQKAAVDAHAIKTLANLLKRTFD 501
                   3444444....57999*****************996 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.047
  V-ATPase_H_N 101 eeqdpwkpflkllnrqddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlssstnevi 166
                   ++ +++ p++ ll+++d  ++  a +++ +l+   + ++      + n +++ L++++++s + + 
    KKY16601.1 630 NDANVAPPIFTLLKNKDIEVQIAATTVVCNLALDFSPMKAA---VVTNGVMKTLCEHAHASHARLR 692
                   33348888999999999999988888888888888888777...5667777777775555444444 PP

>> IFRD  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00033      0.99     192     244 ..     607     655 ..     589     664 .. 0.80
   2 ?   -2.3   0.0      0.63   1.9e+03     222     239 ..     970     987 ..     958     988 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00033
        IFRD 192 lvtaalsawglLltllpssklnkkleedleealealvelLdssdvevriAAGe 244
                  + aa++a   L   +  s l+++l++   ++++  ++lL+ +d+ev+iAA+ 
  KKY16601.1 607 TLLAACNAARTLTRSV--SMLRTSLND--ANVAPPIFTLLKNKDIEVQIAATT 655
                 7778888888888888..777777777..889*******************86 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.63
        IFRD 222 ealealvelLdssdvevr 239
                 e+ e+l  lLd++d++vr
  KKY16601.1 970 EVREKLAGLLDDDDLDVR 987
                 46799************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1003 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.53
# Mc/sec: 5740.30
//
Query:       KKY16602.1  [L=522]
Description: putative amidase family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-91  307.3   0.0    2.6e-91  306.9   0.0    1.2  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.9   0.0   1.4e-95   2.6e-91       2     450 ..      26     502 ..      25     503 .. 0.88

  Alignments for each domain:
  == domain 1  score: 306.9 bits;  conditional E-value: 1.4e-95
                 HHHHHHHHHHHHH.......HHH--EEEEEHCCCCHHHHT---TTT........TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHT CS
     Amidase   2 lveaflkrieavn.......eklnalvtvfieealaqAakldkkra..rgkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkka 91 
                 lv+afl+ri +++       +k+n +  +++++al++A++ld++ +   gk kgpLhG+P++vKD+ d+kg+ tt+Gs+a + +++++Da ++++Lk+a
  KKY16602.1  26 LVSAFLERIGRLDkkdhesgPKIN-STMALSSTALTEASELDTYFQssGGKFKGPLHGIPVLVKDQADTKGLVTTYGSEACKSNIPSEDAFIITKLKNA 123
                 666777777666622222225789.889999*************99878899*********************************************** PP

                 T-EEEEEE--SGGG-SSSSTT-TT..---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT- CS
     Amidase  92 GavilgkTnmdefamgsstensvf..gptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessld 188
                 GavilgkT+m+e+a +  + +s +    t+NP+++ + +GGSS+GsAAavAa+++ la++ DtGGSiR+PAsf+++vG++Pt+g+vSr+g ++l +++d
  KKY16602.1 124 GAVILGKTTMSEWASTWFSASSSTdwVSTQNPYKSGYDVGGSSSGSAAAVAANFCILAVAEDTGGSIRCPASFTNTVGIRPTVGLVSRHGFCPLIKTQD 222
                 **************98777776665689*********************************************************************** PP

                 EEEEEESSHHHHHHHHHHHBS--TT-TTS----.............HHHHHHHHCTT---TT-EEEEEGGGC...SS---CCHHHHHHHHHHHHHCTT- CS
     Amidase 189 vvGplarsvedlalllrvilgedpkdstssvip.............eesedlaeelkkslkglriGvvkedg...vasldpevqravekalkaLeeaGh 271
                 + Gp+ar+ved+a +l+ ++g dp+d  +s                 ++   ++   k+  + r Gvv+e++    + ++  v+++++++l +L+++G 
  KKY16602.1 223 TPGPIARTVEDCAKMLDILVGFDPADEFTSIAWqnqqtllkssnidTPQSYASNLDPKAITKARLGVVRELFgpsTDPASRLVNKVINNCLSTLSANGT 321
                 *************************9877754488899999999965555666667788899**********5544555556899************** PP

                 EEEEEE-CCGGGHHHHHHHHHHHHHHHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHH CS
     Amidase 272 evvevelpsleealslyylilvaeassnlarylgvryerlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefaka 370
                 +++++++p+l++ l  y+  +++   +  +++l+    ++  ++++s+++p++ ++++++ ++   +  +  +s+ +    y     +r++++r ++ +
  KKY16602.1 322 TLIDITIPDLKHYLT-YTPTYTLRSRADINSFLS---TKPHLPSDISQIVPHPHPRPFLDLTSTIAHGPSDPTSDPT----YVSRLLTRDAFQRLLVSI 412
                 *************98.777777666655554444...5889999**************************9999997....888888888888888888 PP

                 CCC..BSEEEEESSSSS--BCCCCCHHHCSHHHHHGCCTTT...HHHHHTT--EEEEECCCCT..............TECEEEEEEESTT-HHHH CS
     Amidase 371 fee..lDvllsPtaptpaprlgekdktidsytvlynlldftavvvpvnlaglpalsvpagksed.............glPvGvqvigkafqeetl 450
                 + +  lD+l +P+  +papr+ +++           ++df+ ++ +++   lpa++vpag+ e              glPvG+++++ +++e++l
  KKY16602.1 413 MAQndLDALTFPSIQIPAPRHIDAE-----NGRFPTCWDFPVNTLLASQGRLPAINVPAGFCEAaeadanaeeqiwhGLPVGLELVSWEYREREL 502
                 88888***************99996.....46788899999999******************8789**************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 3245.54
//
Query:       KKY16603.1  [L=544]
Description: putative transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-24   86.7   0.0    1.9e-24   86.2   0.0    1.2  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.0     1e-28   1.9e-24       2     265 ..      56     299 ..      55     301 .. 0.90

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 1e-28
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLl 98 
                   +++f  +hp +pilhk  fl+k+    +++ ++ sp ll+a++ l+++ +e +   s +++ +      +  +r ++ +++d ++ ++ l ++q+ l
    KKY16603.1  56 HLYFRIVHPTYPILHKKVFLEKY----DRSYREFSPPLLAAVYLLAMNWWEYDRDLSLKTKPDQ-----HALVRLATKTIADVVYRPK-LSTVQAGL 142
                   68*********************....***********************99998887777762.....3345777777789999999.*****999 PP

  Fungal_trans  99 llelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlwes 195
                   ll     + s     + + +  v +  +lgLh +   ++       +e+e+  rrRl+wa ++ Dk+ al++Grp+++d+   +++   +dd+ +++
    KKY16603.1 143 LLLQRARGDS-----WVLTSQLVAVGEELGLHLDCTTWS------IPEWERGLRRRLAWALYMQDKWGALIHGRPSHIDNKTWSVRHVSSDDFPESA 228
                   9888776665.....************************......*****************************************99999999999 PP

  Fungal_trans 196 ddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlq.....seklswveeleraldnW 265
                    d++ e+       + ek+r  ++ l++L++ l++i++ l+++  + +++  +        l+ v+ ++ +l +W
    KKY16603.1 229 ADEDDEEGST----EVEKGRTLFQCLIRLSETLADILDILYTLDGTRDINTIVsangiLGLLELVKPVSLKLRQW 299
                   9888888888....679**************************99999999888888777777777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 3455.65
//
Query:       KKY16604.1  [L=277]
Description: hypothetical protein UCRPC4_g05862 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.023   14.1  17.6      0.027   13.8  17.6    1.1  1  BUD22        BUD22
        1.9    7.0  21.6        2.6    6.5  21.6    1.1  1  TFIIF_alpha  Transcription initiation factor IIF, alpha subun


Domain annotation for each model (and alignments):
>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8  17.6     3e-06     0.027     151     270 ..      81     245 ..       9     265 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3e-06
       BUD22 151 kkkkkkkkkkkeeee.......eeesdkeeesedsedeekeeseddeeeeeededdedaee.......................deedeeaeerelaqy 219
                 +++k+++++++  ++       e+++++ ee+ ++ed+   +s++d++++e+++      +                        ++de+ ee+e a++
  KKY16604.1  81 SGAKAADEESQTRQDpkhiqwaETVVEEPEEDWQAEDAI--TSDSDSDDDEDER------TsitarsvsvvkpefapatittreVDDDEDMEEDEDAEF 171
                 222222333333333444444455555566666666622..2222222222222......24444567799************9455566666666667 PP

       BUD22 220 dg.lla...........sddeded...................eyneetdeesseesdssdssesasesesessekkkkkkk 270
                 ++ +l            sd+ed++                   e      ++ ++ + +s  +++  +++s+ss+++++++ 
  KKY16604.1 172 EElALTrtashhppeltSDSEDDSdeddsmppspptatydaftE------KQRQAIATTSYYDKQ--RESSPSSKTASTAQL 245
                 76333377799*****9555555523355566555553322220......222222222222222..222222222111222 PP

>> TFIIF_alpha  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  21.6   0.00029       2.6     249     402 ..      81     244 ..      64     256 .. 0.48

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00029
                  XXXXX....XXXXXXXXX..XXXX.XXXX.XXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  TFIIF_alpha 249 knkkkldddkkkkrgsdd..dadeydsdd.GddegrEldyisDdsasendpe......eredkkseEeeekkeieqdedeeekeeekkeeegklskkk 337
                   ++k+ +d++ + r++ +  + +e  +++  +d+  E   +sD+++++++ e          + ++E  + +   + e ++  +e+ +e+e+ + ++ 
   KKY16604.1  81 SGAKA-ADEESQTRQDPKhiQWAETVVEEpEEDWQAEDAITSDSDSDDDEDErtsitaRSVSVVKPEFAPATITTR-EVDD--DEDMEEDEDAEFEEL 174
                  45666.5555555554442545555555515789999999999988886666555554444445555443333222.2222..222222333344444 PP

                  XXXXXXXXXXXXX..XXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXX....XXXX.XXXXXXXXXXXX CS
  TFIIF_alpha 338 kkakklkkkkkekdkkdSddeedsddsDide....edsvslvkakKkkekkk....eekvdsnessagnsrpa 402
                    +++  ++  e     Sd+e+dsd++D+       + + ++++k ++  +     +++ +s++ss+++s  +
   KKY16604.1 175 ALTRTASHHPPE---LTSDSEDDSDEDDSMPpsppTATYDAFTEKQRQAIATtsyyDKQRESSPSSKTASTAQ 244
                  444443333333...4555566666666543111134445555444433222111144444555555554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 1977.71
//
Query:       KKY16605.1  [L=555]
Description: putative nadph oxidase regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-14   53.6   5.8    6.7e-08   32.0   0.0    5.1  5  TPR_1     Tetratricopeptide repeat
    2.6e-14   52.1   1.8      7e-06   25.8   0.0    4.8  5  TPR_2     Tetratricopeptide repeat
    3.1e-11   43.4   0.0    2.8e-06   27.5   0.0    2.9  3  TPR_12    Tetratricopeptide repeat
      1e-07   31.5   1.5    2.1e-05   24.4   0.0    4.1  5  TPR_8     Tetratricopeptide repeat
    3.1e-07   30.0   0.2    6.6e-05   22.7   0.0    3.5  3  TPR_7     Tetratricopeptide repeat
    7.9e-07   29.3   0.1       0.24   12.1   0.0    4.5  4  TPR_6     Tetratricopeptide repeat
    1.5e-06   27.7   2.6    0.00018   21.1   0.1    3.8  3  TPR_11    TPR repeat
    2.9e-05   23.9   0.0    5.4e-05   23.1   0.0    1.5  1  PB1       PB1 domain
    3.7e-05   24.3   0.7      0.013   16.1   0.1    2.7  2  TPR_16    Tetratricopeptide repeat
      0.002   18.2   0.0        1.2    9.3   0.0    2.7  2  TPR_9     Tetratricopeptide repeat
     0.0029   17.9   0.1        2.1    8.9   0.0    3.7  4  TPR_17    Tetratricopeptide repeat
     0.0089   16.8   0.1       0.38   11.7   0.0    3.0  2  TPR_14    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.035   14.0   1.1       0.48   10.4   0.0    3.3  4  TPR_10    Tetratricopeptide repeat
       0.16   12.7   0.0         32    5.5   0.0    3.8  3  TPR_4     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.063        81       8      24 ..      13      29 ..      12      31 .. 0.85
   2 !   32.0   0.0   5.2e-11   6.7e-08       2      32 ..      37      67 ..      36      68 .. 0.94
   3 !   11.5   0.0   0.00016       0.2       1      25 [.      70      94 ..      70      98 .. 0.93
   4 ?   -0.3   0.1      0.85   1.1e+03       4      14 ..      98     108 ..      95     111 .. 0.81
   5 ?    4.9   0.0     0.019        25       2      16 ..     121     135 ..     120     148 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.063
                HHHHHHTT-HHHHHHHH CS
       TPR_1  8 GnayfklgkydeAleyy 24
                ++a + +++++eAl+ +
  KKY16605.1 13 ALARYDNNEFEEALKVF 29
                678899********977 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 5.2e-11
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1  2 kalynlGnayfklgkydeAleyyekALelnP 32
                ++l+n+G+++  lg++++A+++y++A++l+ 
  KKY16605.1 37 RILFNMGVIHATLGEHEKAVDCYQRAVKLDQ 67
                689**************************95 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00016
                HHHHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_1  1 akalynlGnayfklgkydeAleyye 25
                a a+++ G+  f  g+++eAl+ ++
  KKY16605.1 70 AVAYFQQGVSNFLVGDFEEALANFN 94
                689******************9997 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.85
                 HHHHHHHHHHT CS
       TPR_1   4 lynlGnayfkl 14 
                 ly +Gn+y   
  KKY16605.1  98 LYLRGNTYIDY 108
                 89******765 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.019
                 HHHHHHHHHHHHTT- CS
       TPR_1   2 kalynlGnayfklgk 16 
                 ++l+n+G++y +l++
  KKY16605.1 121 EVLFNRGLCYVYLQQ 135
                 689*******99876 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0      0.01        13       7      25 ..      12      30 ..      10      32 .. 0.89
   2 !   25.8   0.0   5.4e-09     7e-06       2      31 ..      37      66 ..      36      68 .. 0.95
   3 !   10.7   0.0   0.00036      0.46       2      26 ..      71      95 ..      70     103 .. 0.88
   4 ?   -1.7   0.0       3.5   4.4e+03       3      12 ..      97     106 ..      95     110 .. 0.84
   5 ?    4.9   0.0     0.026        34       2      16 ..     121     135 ..     120     149 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.01
       TPR_2  7 lGlayyklgdyeeAleafe 25
                ++la y ++++eeAl+ f+
  KKY16605.1 12 QALARYDNNEFEEALKVFD 30
                58999***********996 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 5.4e-09
       TPR_2  2 ealynlGlayyklgdyeeAleafekAleld 31
                ++l+n+G +++ lg++e+A++++++A++ld
  KKY16605.1 37 RILFNMGVIHATLGEHEKAVDCYQRAVKLD 66
                589**************************8 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00036
       TPR_2  2 ealynlGlayyklgdyeeAleafek 26
                 a++++G + +  gd+eeAl+ f+ 
  KKY16605.1 71 VAYFQQGVSNFLVGDFEEALANFND 95
                69*******************9985 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 3.5
       TPR_2   3 alynlGlayy 12 
                 +ly +G+ y+
  KKY16605.1  97 LLYLRGNTYI 106
                 699****997 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.026
       TPR_2   2 ealynlGlayyklgd 16 
                 e+l+n+Gl+y +l++
  KKY16605.1 121 EVLFNRGLCYVYLQQ 135
                 89*********9987 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.1e-07   0.00014      26      75 ..      22      66 ..      20      67 .. 0.86
   2 !   27.5   0.0   2.2e-09   2.8e-06       2      72 ..      35      97 ..      34      98 .. 0.91
   3 ?   -3.3   0.0       9.4   1.2e+04      46      58 ..     121     133 ..     114     135 .. 0.68

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.1e-07
      TPR_12 26 lekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75
                +e+al ++ ++   d   t+++l+n+g ++  lg++e+A++ +++a++++
  KKY16605.1 22 FEEALKVFDNI--SD---TSRILFNMGVIHATLGEHEKAVDCYQRAVKLD 66
                67888888666..44...89**************************9876 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 2.2e-09
      TPR_12  2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72
                ++++l n++++++ lg++++A +++++a+ +       ++  +a +++  g   ++ g++eeAl+ ++++l
  KKY16605.1 35 TSRILFNMGVIHATLGEHEKAVDCYQRAVKLD------QY--LAVAYFQQGVSNFLVGDFEEALANFNDTL 97
                778899**********************6666......56..9************************9876 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 9.4
      TPR_12  46 ttlrnLgrlyral 58 
                 ++l+n g +y +l
  KKY16605.1 121 EVLFNRGLCYVYL 133
                 6677888887544 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       5.5   7.1e+03      13      24 ..      18      29 ..      13      30 .. 0.72
   2 !   24.4   0.0   1.6e-08   2.1e-05       2      32 ..      37      67 ..      36      68 .. 0.95
   3 ?    2.3   0.0       0.2   2.6e+02       3      25 ..      72      94 ..      70      95 .. 0.86
   4 ?   -2.6   0.0       7.3   9.3e+03       3      13 ..      97     107 ..      96     107 .. 0.84
   5 ?    0.1   0.0         1   1.3e+03       2      18 ..     121     137 ..     121     148 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 5.5
                HTT-HHHHHHHH CS
       TPR_8 13 klgdyeeAkeyy 24
                + +++eeA +++
  KKY16605.1 18 DNNEFEEALKVF 29
                667888888776 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 1.6e-08
                CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8  2 eayynlgsiylklgdyeeAkeyyekaleldp 32
                ++++n+g i+ +lg++e+A+ +y++a++ld+
  KKY16605.1 37 RILFNMGVIHATLGEHEKAVDCYQRAVKLDQ 67
                899**************************95 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.2
                HHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_8  3 ayynlgsiylklgdyeeAkeyye 25
                ay++ g   +  gd+eeA + ++
  KKY16605.1 72 AYFQQGVSNFLVGDFEEALANFN 94
                899999999999******98875 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 7.3
                 HHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylk 13 
                 ++y+ g++y++
  KKY16605.1  97 LLYLRGNTYID 107
                 5899*****85 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 1
                 CHHHHHHHHHHHTT-HH CS
       TPR_8   2 eayynlgsiylklgdye 18 
                 e+++n g++y  l++  
  KKY16605.1 121 EVLFNRGLCYVYLQQEG 137
                 689*******9998865 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.8   2.3e+03      11      22 ..      18      29 ..      13      31 .. 0.78
   2 !   22.7   0.0   5.1e-08   6.6e-05       2      32 ..      39      67 ..      38      68 .. 0.92
   3 ?    3.3   0.0     0.078     1e+02       4      26 ..      68      90 ..      65      97 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.8
       TPR_7 11 rlGdyeeAiely 22
                + +++eeA++++
  KKY16605.1 18 DNNEFEEALKVF 29
                5699****9987 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 5.1e-08
       TPR_7  2 LlnLarlysrlGdyeeAielyeqsLaltkdp 32
                L+n+++++  lG++e+A+++y++  a+  d+
  KKY16605.1 39 LFNMGVIHATLGEHEKAVDCYQR--AVKLDQ 67
                89*********************..888776 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.078
       TPR_7  4 nLarlysrlGdyeeAielyeqsL 26
                +La++y+++G    +++ +e++L
  KKY16605.1 68 YLAVAYFQQGVSNFLVGDFEEAL 90
                79999999776666666666644 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.35   4.4e+02       6      26 ..      12      32 ..      10      35 .. 0.87
   2 !   12.1   0.0   0.00019      0.24       3      28 ..      39      64 ..      38      66 .. 0.94
   3 ?    6.3   0.0     0.014        17       2      24 ..      72      94 ..      68      97 .. 0.82
   4 ?    3.0   0.0      0.15     2e+02       1      15 [.     121     135 ..     121     149 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.35
                HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  6 lalsyrklgdtdkAlealerl 26
                +al+++  ++ ++Al+ ++++
  KKY16605.1 12 QALARYDNNEFEEALKVFDNI 32
                699999988*******99875 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00019
                HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  3 lyklalsyrklgdtdkAlealerlik 28
                l++++  +  lg+++kA++ ++r +k
  KKY16605.1 39 LFNMGVIHATLGEHEKAVDCYQRAVK 64
                89********99***********987 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.014
                HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  2 AlyklalsyrklgdtdkAleale 24
                A+++++ s +  gd ++Al+ ++
  KKY16605.1 72 AYFQQGVSNFLVGDFEEALANFN 94
                7888888888857*****99886 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrklgd 15 
                 ++l++++l+y  l++
  KKY16605.1 121 EVLFNRGLCYVYLQQ 135
                 68********98634 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1      0.04        52       3      17 ..      15      29 ..      13      31 .. 0.86
   2 !   21.1   0.1   1.4e-07   0.00018       7      39 ..      49      81 ..      43      84 .. 0.87
   3 ?    0.7   0.0      0.33   4.2e+02       8      18 ..      84      94 ..      81      97 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.04
      TPR_11  3 ayyeqGkyeeAieaY 17
                a y+ +++eeA++++
  KKY16605.1 15 ARYDNNEFEEALKVF 29
                78**********986 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 1.4e-07
      TPR_11  7 qGkyeeAieaYkkAlkldPdnaeayynLGlayy 39
                +G+ e+A+ +Y++A+kld+  a ay+  G+  +
  KKY16605.1 49 LGEHEKAVDCYQRAVKLDQYLAVAYFQQGVSNF 81
                8************************99887665 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.33
      TPR_11  8 GkyeeAieaYk 18
                G++eeA+++++
  KKY16605.1 84 GDFEEALANFN 94
                99******986 PP

>> PB1  PB1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   4.2e-08   5.4e-05       2      82 ..     469     552 ..     468     554 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 4.2e-08
                 EEEEEEETTEEEEEEEEGSSS-HHHHHHHHHHHHTSTCCSEEEEEEETTSSEEEESSHHHHHHHHHHHHHT.....SSC.CEEEEEE CS
         PB1   2 vdlKlrygggirrelsvssnisfeeLrakvekrfklsdedvklkYpdedgdlVtitsDeDLeealeearsl.....ksk.tlrlhvq 82 
                 +++K++  +++r  + + + + + ++  +++++f++   ++k+k +d dgd +t   ++DL++ ++ a+++      ++ +l +++q
  KKY16605.1 469 IRVKVHAENDTRY-IMIGPAVEYGDFEGRIREKFGIK-TRLKIKMQD-DGDMITMGDQDDLDMLISNAKAVakrerAEMaKLEIWIQ 552
                 6899999999999.**********************6.******887.89*******************998777633336666665 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.1e-05     0.013       3      64 ..      12      66 ..      11      68 .. 0.89
   2 !   15.0   0.1   2.3e-05      0.03       3      55 ..      42      91 ..      40      99 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.1e-05
      TPR_16  3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraa 64
                +a+a+++++++++A+++++   +         + l++ g++++ +g++++A++ y++a++ +
  KKY16605.1 12 QALARYDNNEFEEALKVFDNISDTS-------RILFNMGVIHATLGEHEKAVDCYQRAVKLD 66
                79999*************7776666.......7*************************9765 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2.3e-05
      TPR_16  3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaa 55
                ++ +++ +g+ ++A+  +++a+k+d      a A++  g++ +  g+++eA+a
  KKY16605.1 42 MGVIHATLGEHEKAVDCYQRAVKLD---QYLAVAYFQQGVSNFLVGDFEEALA 91
                56678899*****************...66777******************96 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00093       1.2       4      53 ..      45      94 ..      41      99 .. 0.91
   2 ?    5.8   0.0     0.012        16      32      62 ..     123     155 ..     119     167 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00093
       TPR_9  4 iaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLe 53
                i++   ++e+a  +++r + l+   +  ++  G+ ++ +G++++Ala ++
  KKY16605.1 45 IHATLGEHEKAVDCYQRAVKLDQYLAVAYFQQGVSNFLVGDFEEALANFN 94
                67888899*************************************99886 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.012
       TPR_9  32 rrdRGlllaqlGclsaAladLeayl..alapda 62 
                 ++ RGl+++ l +   +++d+++++   ++pd 
  KKY16605.1 123 LFNRGLCYVYLQQEGPGMQDFQYAVkeKVTPDH 155
                 689**********************77666733 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.053        68      13      33 ..      36      56 ..      21      57 .. 0.75
   2 !    8.9   0.0    0.0016       2.1       1      33 [.      58      90 ..      58      91 .. 0.94
   3 ?   -2.6   0.1       7.8     1e+04      14      24 ..      96     106 ..      94     112 .. 0.74
   4 ?   -0.9   0.0       2.3   2.9e+03      14      24 ..     121     131 ..     119     138 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.053
      TPR_17 13 adaynnLAelllknGdlmtAr 33
                +  ++n++++++ +G++++A+
  KKY16605.1 36 SRILFNMGVIHATLGEHEKAV 56
                7899**************996 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0016
      TPR_17  1 lylkaleldPnnadaynnLAelllknGdlmtAr 33
                +y++a++ld   a+ay++ ++     Gd+++A+
  KKY16605.1 58 CYQRAVKLDQYLAVAYFQQGVSNFLVGDFEEAL 90
                8********************999999999996 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 7.8
      TPR_17  14 daynnLAelll 24 
                  +++++++++ 
  KKY16605.1  96 TLLYLRGNTYI 106
                 57899999986 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 2.3
      TPR_17  14 daynnLAelll 24 
                 ++++n++ ++ 
  KKY16605.1 121 EVLFNRGLCYV 131
                 89*****9995 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0       0.5   6.5e+02       8      27 ..      13      32 ..       8      37 .. 0.73
   2 !   11.7   0.0    0.0003      0.38       8      39 ..      43      74 ..      36      79 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.5
      TPR_14  8 aeallalGdpdeAiallrra 27
                a a + + +++eA+++++ +
  KKY16605.1 13 ALARYDNNEFEEALKVFDNI 32
                344456789*******9866 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.0003
      TPR_14  8 aeallalGdpdeAiallrralalaPddaeawl 39
                + ++++lG++++A+++++ra++l+   a+a++
  KKY16605.1 43 GVIHATLGEHEKAVDCYQRAVKLDQYLAVAYF 74
                668999****************9877777776 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.6   3.4e+03      13      23 ..      17      27 ..      13      30 .. 0.73
   2 ?   10.4   0.0   0.00038      0.48       7      30 ..      41      64 ..      35      67 .. 0.91
   3 ?   -0.7   0.1       1.1   1.4e+03       8      16 ..      69      77 ..      68      77 .. 0.92
   4 ?   -2.6   0.0       4.5   5.8e+03      16      23 ..      84      91 ..      82      97 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.6
      TPR_10 13 rqrgrydeAea 23
                ++ ++++eA++
  KKY16605.1 17 YDNNEFEEALK 27
                78889999986 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00038
      TPR_10  7 NLanalrqrgrydeAealleeala 30
                N+++++  +g++++A++ +++a+ 
  KKY16605.1 41 NMGVIHATLGEHEKAVDCYQRAVK 64
                99********************97 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.1
      TPR_10  8 Lanalrqrg 16
                La+a++q+g
  KKY16605.1 69 LAVAYFQQG 77
                9******98 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 4.5
      TPR_10 16 grydeAea 23
                g+++eA+a
  KKY16605.1 84 GDFEEALA 91
                78888887 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.4   3.1e+03       5      21 ..      10      26 ..       9      30 .. 0.84
   2 ?    5.5   0.0     0.025        32       3      25 ..      38      60 ..      36      61 .. 0.85
   3 ?    1.8   0.1      0.42   5.3e+02      13      22 ..      82      91 ..      68      91 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.4
       TPR_4  5 laLArallalGdldeAr 21
                +++A a ++  +++eA+
  KKY16605.1 10 WVQALARYDNNEFEEAL 26
                78899999999999997 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.025
       TPR_4  3 allaLArallalGdldeAralle 25
                 l +++  ++ lG+++ A +  +
  KKY16605.1 38 ILFNMGVIHATLGEHEKAVDCYQ 60
                57899*************98765 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.42
       TPR_4 13 alGdldeAra 22
                + Gd++eA+a
  KKY16605.1 82 LVGDFEEALA 91
                5689999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 3459.84
//
Query:       KKY16606.1  [L=249]
Description: putative superoxide dismutase copper chaperone [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-13   48.4   0.0    1.8e-12   47.5   0.0    1.4  1  HMA       Heavy-metal-associated domain
    3.7e-10   40.1   0.0    5.5e-10   39.6   0.0    1.3  1  Sod_Cu    Copper/zinc superoxide dismutase (SODC)


Domain annotation for each model (and alignments):
>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0     2e-16   1.8e-12       1      62 []      12      69 ..      12      69 .. 0.97

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 2e-16
         HMA  1 tvrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62
                t++v ++hC+gC+++v  +L +l+g+++v  +l  + v Veg++++   ++i+ aie++g++
  KKY16606.1 12 TFAV-PLHCDGCVQDVSGALNKLEGITKVQANLQDQLVFVEGTTAP---SQIVSAIEATGRD 69
                7899.9****************************************...*********9975 PP

>> Sod_Cu  Copper/zinc superoxide dismutase (SODC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   6.2e-14   5.5e-10       6     122 ..      95     199 ..      89     216 .. 0.83

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 6.2e-14
                 EEEEEEEEEEECSTTSTCEEEEEEEECSS-STEEEEEEEESSTTTTTTTGGG-SB-STT-.CSSTTTTTCS-TTEEEEEEESTTSEEEEEEEEESC.BC CS
      Sod_Cu   6 gevsGtvtftqeeskesgsvevtvevkglppggkhgfHiHengdcsagfksagghfnptgkkhgapndeerhaGDLgnievdadgtakleittdklvsl 104
                 ++v+G +++ + +   ++ + v+++++glp+g  +   +  +gd+s g +s+gg ++   +k      + r  G++g +ev++dg++++ +  dk +s+
  KKY16606.1  95 DKVRGLARMVEVG---PNMTLVDLTIRGLPAG-RYQATVRDTGDISRGAASTGGIWEAAMTKLR---VNRRPRGHFGVVEVGKDGKGSA-FL-DKPLSI 184
                 6899999999877...46799********986.6**********************87665555...3469***************999.45.888999 PP

                 STTTBCTTEEEEEESS-- CS
      Sod_Cu 105 kgensilgralvihagaD 122
                     +i+gr++v+ +++ 
  KKY16606.1 185 W---EIIGRSMVVSSQER 199
                 8...8********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1670.69
//
Query:       KKY16607.1  [L=505]
Description: putative protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.3e-66  221.9   0.0    1.4e-65  221.3   0.0    1.3  1  Pkinase        Protein kinase domain
    5.8e-31  107.7   0.0    1.2e-30  106.7   0.0    1.6  1  Pkinase_Tyr    Protein tyrosine kinase
     0.0036   16.3   0.0     0.0066   15.4   0.0    1.6  1  Haspin_kinase  Haspin like kinase domain
     0.0047   16.3   0.0     0.0076   15.6   0.0    1.3  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0095   15.9   0.2      0.021   14.8   0.0    1.6  2  APH            Phosphotransferase enzyme family
  ------ inclusion threshold ------
        4.6    5.9   6.2        6.7    5.4   6.2    1.1  1  Presenilin     Presenilin


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.3   0.0   4.8e-69   1.4e-65       1     264 []     133     425 ..     133     425 .. 0.94

  Alignments for each domain:
  == domain 1  score: 221.3 bits;  conditional E-value: 4.8e-69
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHH.HHSS-- CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee..kdelylvleyveggeladlle.rkgsls 96 
                 ye+l+ + eGs+G V +a++++tg+ivA+Kk+k + a++    + lrEi+ lk+++hpniv l+ev+     +++ylv+e+++++ l+ ll      + 
  KKY16607.1 133 YERLNDIEEGSYGLVSRAKNSRTGQIVALKKLKMDYANDGFPVTGLREIQTLKSCQHPNIVPLLEVVMGstLKDVYLVMEFLSHD-LKALLDdLPEPFL 230
                 67788899*********************************************************998644799*********77.9999984334699 PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHS CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltg 193
                 ++e+k +++q+++g+++lHs+ i+HrDlK++N+Li+++gelKi+DFG+a+   s  + lt  v+t +Y++PE+l +e++y+ ++D+WslG+i+ el+t+
  KKY16607.1 231 PSEIKTLMQQLASGISFLHSRWIMHRDLKTSNLLINNRGELKIADFGMARYTGSPPPkLTATVVTLWYRSPELLlGEESYDFSIDIWSLGCIFSELITR 329
                 99*************************************************9998877****************999********************** PP

                 S-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS...............................-HHHHHHHHHHT-SSGCCSTTHHHHHT CS
     Pkinase 194 kppfsgekgkekvekeldqlekilkilg.etkeklpeasei...............................seeakdllkkllkkdpkkRltaeellq 260
                 +p+fs   gk+    e+dql ki+  lg ++ +++p+   +                               s + + ll++ll+++p++R++aee+l+
  KKY16607.1 330 TPLFS---GKN----EVDQLSKIFTFLGpPNAKEWPRYPRLpnsksihpmisklksnssaavgispktfpyaSTKTLLLLSDLLSYNPSHRPSAEEILS 421
                 *****...555....899*99*******8778888888888999999**************************************************** PP

                 SGGG CS
     Pkinase 261 hpyl 264
                 hpy+
  KKY16607.1 422 HPYF 425
                 ***8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.7   0.0   3.9e-34   1.2e-30       5     205 ..     137     331 ..     133     422 .. 0.85

  Alignments for each domain:
  == domain 1  score: 106.7 bits;  conditional E-value: 3.9e-34
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkfLrkkekek 99 
                  +++ eG++G V +++ +    ++ + Va+K+lk ++ ++      l+e++++k+++hpniv ll v++    + +++v+e++++ dL+  L +   e+
   KKY16607.1 137 NDIEEGSYGLVSRAKNS----RTGQIVALKKLKMDYANDGfPVTGLREIQTLKSCQHPNIVPLLEVVMgsTLKDVYLVMEFLSH-DLKALLDDL-PEP 228
                  67899********9988....8999********9998887578899**********************766677********98.9*******9.999 PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllw 196
                  +  +++  +++q+A+G+++L+s+ ++Hrdl + N L++++   ki+DfG+ar +   +   k + + + + + +pE l  ++ +  + D+Ws G +  
   KKY16607.1 229 FLPSEIKTLMQQLASGISFLHSRWIMHRDLKTSNLLINNRGELKIADFGMARYT--GSPPPKLTATVVTLWYRSPELLLGEEsYDFSIDIWSLGCIFS 324
                  ****************************************************99..56666677778888888***9876554999************ PP

                  HHHTTSSGT CS
  Pkinase_Tyr 197 Eiftlgesp 205
                  E++t  ++p
   KKY16607.1 325 ELIT--RTP 331
                  ***9..444 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.2e-06    0.0066     230     284 ..     255     314 ..      53     318 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.2e-06
  Haspin_kinase 230 HRdLhldniLvdknlnvtlidlklsRle.....ssegkvlytrlddpllFqGggDyqfei 284
                    HRdL+  n L+++ ++  + d+ ++R++     + + +v+      p+l  G++ y f i
     KKY16607.1 255 HRDLKTSNLLINNRGELKIADFGMARYTgspppKLTATVVTLWYRSPELLLGEESYDFSI 314
                    ***************************998887555666666666999999999999976 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.5e-06    0.0076      93     166 ..     208     276 ..     162     282 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.5e-06
         Kdo  93 lllterlegaqdLedllakwae.laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                  l++e l    dL++ll +  e +  +  ++l+++++  i+ lh++ ++H+dl   n+l+++++    e+ + D+
  KKY16607.1 208 YLVMEFLS--HDLKALLDDLPEpFLPSEIKTLMQQLASGISFLHSRWIMHRDLKTSNLLINNRG----ELKIADF 276
                 56777775..4999999998888777778899*****************************998....5555555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.9   5.7e+03     123     143 ..      46      60 ..       8      81 .. 0.48
   2 !   14.8   0.0   6.9e-06     0.021     144     198 ..     230     281 ..     197     283 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.9
                 CCHHHHHHCHHHCCCGCCTCC CS
         APH 123 lellrqlesatarllaselld 143
                 +e  rq+ +++        ++
  KKY16607.1  46 PEAIRQRKREKE------EKK 60 
                 222222222222......222 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 6.9e-06
                 HHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 144 lleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedagl 198
                 l  e+   ++++la       ++ ++H+Dl++ Nll++ + g++  + Df++a++
  KKY16607.1 230 LPSEIKT-LMQQLASGISFLHSRWIMHRDLKTSNLLIN-NRGEL-KIADFGMARY 281
                 2334444.5555555555599999**************.66776.699****997 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   6.2    0.0022       6.7     213     304 ..      20     106 ..      12     129 .. 0.34

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0022
  Presenilin 213 aLiYsatvvvlaaeek.kaevaeseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeesseekeseessessee 304
                 ++ Y ++ +   ++++ k++ a +e+ e+ +++k+e++e+++++e+++++ +++++++       + +++ e+ ++e+ +++e+ ++++++++
  KKY16607.1  20 FVFYTSHSFNRGMASNpKSRWADEESPEAIRQRKREKEEKKRAKEEKQRKLREEEEARV------KYKATIENIQTENVDTSERPSKRRRTSN 106
                 55566655555444442222222222222222222222222222222211111111111......1111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1910  (0.106531); expected 358.6 (0.02)
Passed bias filter:                      942  (0.0525406); expected 358.6 (0.02)
Passed Vit filter:                       145  (0.00808746); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.52
# Mc/sec: 2897.36
//
Query:       KKY16608.1  [L=877]
Description: putative denn domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-40  138.9   0.1    3.1e-40  138.1   0.1    1.4  1  DENN            DENN (AEX-3) domain
      1e-05   26.2   0.0    3.7e-05   24.4   0.0    2.1  1  uDENN           uDENN domain
     0.0063   17.0   3.2      0.024   15.1   3.2    2.0  1  Elongin_A       RNA polymerase II transcription factor SIII (
  ------ inclusion threshold ------
       0.17   11.7  14.3       0.37   10.6  14.3    1.5  1  ERM             Ezrin/radixin/moesin family
       0.18   12.0  13.7        1.8    8.8   2.5    3.0  2  TMF_TATA_bd     TATA element modulatory factor 1 TATA binding
       0.45   11.0  17.6       0.43   11.1  14.9    2.3  2  APG6_N          Apg6 coiled-coil region
          2    8.6  12.3      0.047   13.8   3.0    2.7  2  TolA_bind_tri   TolA binding protein trimerisation
        2.2    9.3   5.0       0.82   10.7   0.2    2.7  3  DUF1770         Fungal protein of unknown function (DUF1770)
        2.4    8.4  10.1       0.47   10.6   1.6    2.7  2  Cnn_1N          Centrosomin N-terminal motif 1
        3.5    7.8  22.3      0.046   13.9   5.8    2.8  3  ATG16           Autophagy protein 16 (ATG16)
        5.7    7.2   8.0          8    6.8   1.6    2.8  2  Spc24           Spc24 subunit of Ndc80
        6.7    6.7  16.4       0.57   10.2   4.5    2.5  2  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C


Domain annotation for each model (and alignments):
>> DENN  DENN (AEX-3) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.1   0.1   2.1e-43   3.1e-40       1     186 []     132     313 ..     132     313 .. 0.97

  Alignments for each domain:
  == domain 1  score: 138.1 bits;  conditional E-value: 2.1e-43
        DENN   1 yipkalcilsrlpffelfkkiLkalekrlkssskeaplesfianlllevplPapgktlklvslaveekillqrpe.dselPledvdlkelfrcLsieni 98 
                 +ip++l++lsr+p+++l+ ++L+ ++ ++++++  + +++  ++ +l++p P+ ++++++  ++++ ++++q+p+ ++ +  +++++++lf+cLsi+ni
  KKY16608.1 132 WIPYCLSFLSRYPLYNLLGDYLRGMWIHWNKAT--NLFHAEEVSRILSFPAPRLNDLVRI--DMKDYALCYQFPSsPTGF--QNFSMWPLFTCLSIPNI 224
                 89*******************************..9999999999***************..9************77788..***************** PP

        DENN  99 lqlfeavLl.ErriillSeklarLtsvaealvallyPlkWqhiyiPvlpaslldvl.eaPtPfiiGvesslleleekpledvvlvDldkn 186
                 + ++ea+++ +rrii++S+ +a+Lt +ae++  +++ ++W+++y+Pv++a++++ l + P P+i+Gv+ ++++ + + ++d +++Dld+n
  KKY16608.1 225 VGVLEAAVSpTRRIIFVSHYPAMLTVAAETIRFCVRVYEWSGLYVPVVHARHAKDLvQEPGPYILGVTAECRS-LFTAPSDALVIDLDRN 313
                 *********99***************************************9987655****************.**************86 PP

>> uDENN  uDENN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   2.5e-08   3.7e-05       1      66 []      36     100 ..      36     100 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2.5e-08
       uDENN   1 PevldryPpadhe.dfp.pedvpl.FcfPeglewsssteksserpepefFsFvLTdedgsrvYGaCltf 66 
                 Pe+l + P  + + +++   +  +  cfP+++  +++    +++p+  ++sFvL ++++ ++YG++l++
  KKY16608.1  36 PEILGSSPRLETDnEIArALHASMrACFPHDV--EIC--TGRSQPHCVHHSFVLQQDSSHTLYGIALRV 100
                 77777778743331233333444559****98..332..345678999*******9999999****985 PP

>> Elongin_A  RNA polymerase II transcription factor SIII (Elongin) subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   3.2   1.6e-05     0.024      13     100 ..     416     508 ..     413     511 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.6e-05
   Elongin_A  13 rpiLekctpeqLreiEensphlaeetdelWkklikrdfpeesk.ekste.....pkepkswrelYeklkkereeklkeaaerLreaykklkkek 100
                 +p++ k ++++L ei  + ++   +  e W+ +i+ + + +++  k+t+     ++e ++w++++ k++  +e +l++   +Lr +++++k+e 
  KKY16608.1 416 KPLMTKVSMRHLNEIVRERNQYSRDAMEAWQDFINLKGRMDTElSKVTKrsnflEQELETWKSQFLKFQAFAE-QLNKEVSELRVKIEGHKREN 508
                 788889****************************7777776665555553444445559*********87665.56666688999999998875 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  14.3   0.00025      0.37       4     177 ..     463     631 ..     460     676 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00025
         ERM   4 erekreleerLkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeserke 102
                  ++ + le++L+  ++++ k q+  ++ ++++ +L  k +  ++e ++L+    + +   +rl  + + +e+++++  + l   ++ a++le+e++r  
  KKY16608.1 463 TKRSNFLEQELETWKSQFLKFQAFAEQLNKEVSELRVKIEGHKRENRRLTGLIDQQKDDVARLTLRLSGTEKQRDNALEALVLQQEIAEDLERERKRNR 561
                 6777889******************************************************************************************** PP

         ERM 103 eeaerLkeeleeareaeeeakekllealstpskseseenveeseteeeeenseeesaeletdeveklsleieeeR 177
                 +e + L++      ++  ea++ + ++ s  +      ++++ e+   + ++++e ++ +++++e+ ++e+ e+ 
  KKY16608.1 562 KELSALQHTNGTLSRQRDEAQRVVVHLRSLIH-----GQTHHMEHIVRSLSTAPELTDYIKEGYEEDVEEEDEDE 631
                 ********866666666666655555444442.....22333333333334444444444444433333333222 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   6.3    0.0055       8.2      24      98 ..     469     554 ..     453     556 .. 0.87
   2 ?    8.8   2.5    0.0012       1.8      11      58 ..     547     594 ..     543     629 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0055
  TMF_TATA_bd  24 lEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelek...........eleelqeryetlLellGeksEeveELr 98 
                  lE El++ k++  +++a  +++++e+ +l  + e  k+++++l+ l             +l+  +++ +++Le l  ++E  e+L+
   KKY16608.1 469 LEQELETWKSQFLKFQAFAEQLNKEVSELRVKIEGHKRENRRLTGLIDqqkddvarltlRLSGTEKQRDNALEALVLQQEIAEDLE 554
                  89**********************************99999999887766788888888888888888888888888888888887 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0012
  TMF_TATA_bd  11 vqlverlsseirrlEgElaslkeelerleaerdeareeivklmkenee 58 
                  +++ e l+ e +r   El++l+ ++ +l+++rdea++ +v+l +  + 
   KKY16608.1 547 QEIAEDLERERKRNRKELSALQHTNGTLSRQRDEAQRVVVHLRSLIHG 594
                  56788999999999**************************99876553 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         3   4.5e+03     100     128 ..     429     457 ..     424     462 .. 0.70
   2 ?   11.1  14.9   0.00029      0.43      14     125 ..     469     584 ..     466     592 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3
      APG6_N 100 rfwreynelqlelleleeeldsleaqyeh 128
                 + +re+n+++++ +e  ++   l+ +++ 
  KKY16608.1 429 EIVRERNQYSRDAMEAWQDFINLKGRMDT 457
                 56778888888888877777777766665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00029
      APG6_N  14 ldkqleqaekerdaYeeflkklkkekkeeek....qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynel 108
                 l+++le+ +++  ++++f ++l+ke +e +     ++ e ++l   +++ +++ ++l   L  +ek+r++  ++l  ++e +e+le+e +r  +e ++l
  KKY16608.1 469 LEQELETWKSQFLKFQAFAEQLNKEVSELRVkiegHKRENRRLTGLIDQQKDDVARLTLRLSGTEKQRDNALEALVLQQEIAEDLERERKRNRKELSAL 567
                 7899*********************666544888888888888888***************************************************** PP

      APG6_N 109 qlelleleeeldsleaq 125
                 q++   l  ++d  +  
  KKY16608.1 568 QHTNGTLSRQRDEAQRV 584
                 ****9999999988755 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   3.0   3.1e-05     0.047       5      74 ..     465     537 ..     461     539 .. 0.84
   2 ?   -0.6   1.0      0.98   1.5e+03      19      51 ..     570     602 ..     551     605 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.1e-05
  TolA_bind_tri   5 rvarLErilearsqlllelqqqlealqqelreLRGqiEelqyqleq...leerQrdlYldlDerlrkleagga 74 
                    r   LE+ le  ++  l+ q   e+l++e++eLR +iE ++ ++++   l+ +Q+d    l  rl+  e+++ 
     KKY16608.1 465 RSNFLEQELETWKSQFLKFQAFAEQLNKEVSELRVKIEGHKRENRRltgLIDQQKDDVARLTLRLSGTEKQRD 537
                    556699*****999************************99877665222689****99999999999998875 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.98
  TolA_bind_tri  19 lllelqqqlealqqelreLRGqiEelqyqleql 51 
                    ++  l +q ++ q+ +  LR  i  +++++e +
     KKY16608.1 570 TNGTLSRQRDEAQRVVVHLRSLIHGQTHHMEHI 602
                    455678888889999999999999999988865 PP

>> DUF1770  Fungal protein of unknown function (DUF1770)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2       2.7   4.1e+03      39      63 ..     600     639 ..     550     656 .. 0.57
   2 ?   10.7   0.2   0.00055      0.82      38      88 ..     754     804 ..     716     815 .. 0.71
   3 ?   -0.6   0.1       1.8   2.8e+03      22      57 ..     804     838 ..     793     855 .. 0.41

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.7
     DUF1770  39 k...............ddesldskeeddeedeipysvirp 63 
                 +                +e ++++ e+++ede+   + +p
  KKY16608.1 600 EhivrslstapeltdyIKEGYEEDVEEEDEDETTAPIGEP 639
                 2333334333433333223333333344444444334444 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00055
     DUF1770  38 kkddesldskeeddeedeipysvirpvsrrqtlpPlPDLRFeqSYLkSiak 88 
                 +++++  +s+    +ed+ ++  + p +r +++pP PDL +  S   S+a+
  KKY16608.1 754 TTSENGAESTVGTVDEDQEHSGYLTPSNRASSIPPTPDLVHRSSTAMSMAS 804
                 2233333334444667777788*****************998887777665 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.8
     DUF1770  22 staaskkepvtleekskkddesld..skeeddeedeip 57 
                 s aa ++ + +l+ ++  d+ s++   k+++ ++de  
  KKY16608.1 804 SSAATSNAISELQATR--DRASIQanPKIVE-DDDENA 838
                 2223333333333333..4444441122222.222222 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.6   0.00032      0.47      24      70 ..     467     519 ..     434     522 .. 0.89
   2 ?    1.7   1.7      0.19   2.8e+02      35      71 ..     533     569 ..     523     587 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00032
      Cnn_1N  24 yfLeerleklse......eqkeellkenielkveveslqkelkekkkllreae 70 
                 +fLe++le  ++         e+l ke  el+v++e  ++e+ +++ l+++ +
  KKY16608.1 467 NFLEQELETWKSqflkfqAFAEQLNKEVSELRVKIEGHKRENRRLTGLIDQQK 519
                 89*******9999***999***************************9999876 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.19
      Cnn_1N  35 eeqkeellkenielkveveslqkelkekkkllreaek 71 
                 e+q++++l+ ++  ++  e+l++e k+ +k+l  +++
  KKY16608.1 533 EKQRDNALEALVLQQEIAEDLERERKRNRKELSALQH 569
                 4577777777777777777888888888888776654 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   5.8   3.1e-05     0.046     107     176 ..     469     538 ..     459     551 .. 0.91
   2 ?    3.6   3.5     0.046        69      76     129 ..     550     603 ..     541     614 .. 0.80
   3 ?   -3.1   0.5         5   7.5e+03      53      63 ..     812     822 ..     780     850 .. 0.42

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.1e-05
       ATG16 107 lneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklrk 176
                 l++el++ +++  + ++  ++l++e+++l+ k++ ++ e r ++ l+++++D+++ L+l+l+  E+++++
  KKY16608.1 469 LEQELETWKSQFLKFQAFAEQLNKEVSELRVKIEGHKRENRRLTGLIDQQKDDVARLTLRLSGTEKQRDN 538
                 7889999999999999999***********************************************9984 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.046
       ATG16  76 iqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaele 129
                  ++le ++++ r+el++l+ ++g+l+ +  e++  +  l++ +  ++  ++++ 
  KKY16608.1 550 AEDLERERKRNRKELSALQHTNGTLSRQRDEAQRVVVHLRSLIHGQTHHMEHIV 603
                 567889999999999999999999999999998888888888888888877665 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 5
       ATG16  53 sskksakekea 63 
                  s+ +a++++a
  KKY16608.1 812 ISELQATRDRA 822
                 11111111111 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   1.6    0.0053         8       1      49 [.     454     517 ..     454     530 .. 0.75
   2 ?    3.1   0.6     0.072   1.1e+02      13      45 ..     550     582 ..     541     609 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0053
       Spc24   1 kldnekfriakelsdleselesleselaelkeeleeleeesee.........keser.......v 49 
                 ++d+e+ +++k ++ le+ele  +s+  + ++  e+l++e +e         +e+ r       +
  KKY16608.1 454 RMDTELSKVTKRSNFLEQELETWKSQFLKFQAFAEQLNKEVSElrvkieghkREN-RrltglidQ 517
                 5899*********************************999999777775553222.135666542 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.072
       Spc24  13 lsdleselesleselaelkeeleeleeeseeke 45 
                 ++dle+e ++ ++el+ l+++  +l++++ e +
  KKY16608.1 550 AEDLERERKRNRKELSALQHTNGTLSRQRDEAQ 582
                 579999999999999999999999999998833 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.5   0.00038      0.57      29     108 ..     455     534 ..     446     539 .. 0.93
   2 ?    0.3   5.5      0.44   6.6e+02      35      80 ..     545     590 ..     533     633 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00038
  CENP-F_leu_zip  29 LerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslen 108
                     ++ el  + +  + ++ e Et k +  ++++  e+l++e +el+++++  ++e+  L+  + ++++ v  L  + s +e+
      KKY16608.1 455 MDTELSKVTKRSNFLEQELETWKSQFLKFQAFAEQLNKEVSELRVKIEGHKRENRRLTGLIDQQKDDVARLTLRLSGTEK 534
                     88899999999999******************************************************999888877776 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.44
  CENP-F_leu_zip  35 mseenqekvileaEtskaevetlkeeieelaeelreleldLvalrs 80 
                      ++e  e++++e   +++e+++l++   +l++++ e +  +v+lrs
      KKY16608.1 545 LQQEIAEDLERERKRNRKELSALQHTNGTLSRQRDEAQRVVVHLRS 590
                     4555566666666666666666666666666666666666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (877 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1015  (0.0566122); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.51
# Mc/sec: 5130.10
//
Query:       KKY16609.1  [L=374]
Description: putative ubiquinol-cytochrome c reductase iron-sulfur subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.1e-11   41.6   0.0    1.9e-10   40.5   0.0    1.5  1  Rieske         Rieske [2Fe-2S] domain
    1.9e-10   40.9   0.7    4.5e-10   39.7   0.7    1.7  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
      5e-10   39.7   0.8    1.3e-09   38.4   0.8    1.7  1  UCR_TM         Ubiquinol cytochrome reductase transmembrane r
  ------ inclusion threshold ------
      0.084   13.2   0.6      0.084   13.2   0.6    1.9  2  Histone        Core histone H2A/H2B/H3/H4
       0.21   11.7   2.2       0.22   11.6   0.2    2.0  2  TAFII28        hTAFII28-like protein conserved region
        3.7    7.6   8.2        4.3    7.3   0.2    2.5  2  DUF2514        Protein of unknown function (DUF2514)


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   6.4e-14   1.9e-10      32      87 ..     306     360 ..     255     362 .. 0.75

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 6.4e-14
                 TTS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEETTSBEEE-TTHHHEEE CS
      Rieske  32 edgevyAlsdvCtHrgaplsegkidekgvleCpcHgwaydadGkvikgPaprplat 87 
                 ++ e+ ++ ++CtH+g+ + ++++d +    CpcHg+ yd +G+++kgPap +l+ 
  KKY16609.1 306 KNPEWLVMLGICTHLGCVPIGEAGDFG-GWFCPCHGSHYDISGRIRKGPAPLNLEV 360
                 367788************988777544.677*******************998875 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.7   1.5e-13   4.5e-10       3      65 .]      20      84 ..      18      84 .. 0.91

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 1.5e-13
                   XXHHHHHHHHHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCT..TSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF  3 LPiarvkkImksdpdarkiakdAkeliaecveefieelaseAaeickke..krKtikaehiklAv 65
                   LP+arvkkI+  d+d+++ +++A + i+ ++e+fi++l+++A  ++k e   r+ +++++ + Av
     KKY16609.1 20 LPLARVKKIIAMDDDIAQCSNSAAFAISIATEMFIRQLTQQAHNVVKSErkPRRNLQYKDFATAV 84
                   9*****************************************98776541169999999999987 PP

>> UCR_TM  Ubiquinol cytochrome reductase transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.8   4.3e-13   1.3e-09       5      66 .]     194     245 ..     190     245 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 4.3e-13
      UCR_TM   5 kvPdfsdyrresvkDpskssretedeRkaftylvlaggavvgayaaKsvVqkfvssmsASAD 66 
                 kvP+f +y  ++   p       e ++++f+y+v++  ++++a +aK++Vq+f+  msASAD
  KKY16609.1 194 KVPSFGKYASKR---P-------EISNRVFSYFVAGSMGLLAAAGAKATVQDFLVNMSASAD 245
                 566666665554...4.......5577**********************************9 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.6   2.8e-05     0.084      65     128 ..      20      84 ..       8      87 .. 0.84
   2 ?   -1.9   0.3       1.3     4e+03      24      32 ..     151     162 ..     121     181 .. 0.44

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.8e-05
                 HHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT..XSEEXHHHHHHHH CS
     Histone  65 lpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaK..RvTitpkDiqlAr 128
                 lp aR v++i   +++    s++a  a+  a+E ++ +l+++A +++k  +  R+ ++ kD  +A+
  KKY16609.1  20 LPLAR-VKKIIAMDDDIAQCSNSAAFAISIATEMFIRQLTQQAHNVVKSERkpRRNLQYKDFATAV 84 
                 899**.8888887999999***************************99876457888888877765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.3
                 XXHT...TS-SS CS
     Histone  24 kker...kassk 32 
                 ++++   +a+s+
  KKY16609.1 151 ANASrvvVAASS 162
                 222223211111 PP

>> TAFII28  hTAFII28-like protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   7.5e-05      0.22      20      84 ..      18      84 ..      13      86 .. 0.85
   2 ?   -1.6   0.1      0.98   2.9e+03      58      72 ..     156     170 ..     151     176 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.5e-05
     TAFII28 20 sklnkaavkklvnsvl.sqsvsqnvaivvaglaKvFvgeiveeArevqeeweesg.plqpehlreay 84
                s l+ a vkk++      +++s+  a +++  + +F+  + ++A +v +++++ +  lq +++  a+
  KKY16609.1 18 SVLPLARVKKIIAMDDdIAQCSNSAAFAISIATEMFIRQLTQQAHNVVKSERKPRrNLQYKDFATAV 84
                7788899***997766456699999999999****************99998888899999988876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.98
     TAFII28  58 iveeArevqeewees 72 
                 +v +A +vq+++++ 
  KKY16609.1 156 VVVAASSVQQQQQQR 170
                 788889999888665 PP

>> DUF2514  Protein of unknown function (DUF2514)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.2    0.0014       4.3      96     134 ..      21      59 ..       8      86 .. 0.84
   2 ?    2.2   3.4     0.057   1.7e+02      28      95 ..     105     170 ..      96     181 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0014
     DUF2514  96 kLaaaksavaadsaaaargkaaaraavvLadlLsraaer 134
                  La+ k+ +a d ++a+ +++aa a+ +  +++ r   +
  KKY16609.1  21 PLARVKKIIAMDDDIAQCSNSAAFAISIATEMFIRQLTQ 59 
                 479999**************************9886543 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.057
     DUF2514  28 ewekrwadrdaedsqakviaeeaaReeeqrrkaaaekavkdaqekaaaAradavgaaaaadrLrqeaa 95 
                 ++++++a++ a+  + ++ +++  R++     +++ek +  aq  +  A a  v +aa+  + +q+ +
  KKY16609.1 105 QFKEKKAREAANGVSVEAGQTTLDRQH--PAPQTEEKLQAMAQPGQVNANASRVVVAASSVQQQQQQR 170
                 455555555554444444444444444..445677888888888888887777666665544444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       902  (0.0503096); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2461.12
//
Query:       KKY16610.1  [L=1468]
Description: hypothetical protein UCRPC4_g05869 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-36  125.1   0.0      3e-36  123.8   0.0    1.8  1  F1F0-ATPsyn_F  Mitochondrial F1-F0 ATP synthase subunit F of 


Domain annotation for each model (and alignments):
>> F1F0-ATPsyn_F  Mitochondrial F1-F0 ATP synthase subunit F of fungi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.8   0.0   1.7e-40     3e-36       1      92 []       4      94 ..       4      94 .. 0.99

  Alignments for each domain:
  == domain 1  score: 123.8 bits;  conditional E-value: 1.7e-40
  F1F0-ATPsyn_F  1 vvrralstlipPkiaspkalgaaknaarlervvsfYkkLPkGpapkakakgllgrykakyfdgknasgkPllhlilgllllgYsieYyfHLr 92
                   ++rralstlipPkia+p+a+++  ++ar+ervv fY+kLP+Gpap+ k+kgll+ry+a+yf gkn+++ P++h+i+g+l+lgY++eYyfHLr
     KKY16610.1  4 ITRRALSTLIPPKIATPSAVSGGGSTARMERVVGFYEKLPRGPAPEIKPKGLLERYQARYF-GKNSTAGPIWHAIIGILALGYTTEYYFHLR 94
                   589**********************************************************.*****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.50
# Mc/sec: 8904.35
//
Query:       KKY16611.1  [L=236]
Description: putative nadh-ubiquinone oxidoreductase 18 kda [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-37  125.7   1.9    9.3e-37  125.2   1.9    1.2  1  ETC_C1_NDUFA4  ETC complex I subunit conserved region


Domain annotation for each model (and alignments):
>> ETC_C1_NDUFA4  ETC complex I subunit conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.2   1.9   5.2e-41   9.3e-37       1      94 [.     120     215 ..     120     216 .. 0.98

  Alignments for each domain:
  == domain 1  score: 125.2 bits;  conditional E-value: 5.2e-41
                    EEEEE--SS--STTTT-SS--EEEEEEEESS..S---TTT-SSSS--SEEECEEEESSHHHHHHHHHHCT-EEEEE-SST-XXXXXXXXXXXXXXX CS
  ETC_C1_NDUFA4   1 kvrIykpaknamqsGkaktkkWklefeeqek..rwenplmGWtssaDtlsqvslkFdskedAiayaekqgweyeveepkkrkvkpksYadnfsvkr 94 
                    +vrIy+pak+a+qsG+ + + W++++++ +k  rwenplmGW+ss+D+++ ++l+F+skedAi +a+kqg+ey+v+ep++rk+ pk+Ya+nf +++
     KKY16611.1 120 TVRIYRPAKTATQSGTWHQHVWRMDWDPLQKghRWENPLMGWQSSSDAMQGTHLNFKSKEDAIMFANKQGYEYFVQEPNERKIVPKAYANNFIHDK 215
                    69**************************99999***********************************************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1686.37
//
Query:       KKY16612.1  [L=358]
Description: putative deoxyhypusine hydroxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-25   88.8   3.6    1.2e-12   48.0   0.4    3.5  4  HEAT_2    HEAT repeats
    3.5e-18   64.4   1.1      0.083   13.6   0.1    6.8  6  HEAT_PBS  PBS lyase HEAT-like repeat
    3.6e-06   26.8   2.6        2.9    8.4   0.0    6.0  8  HEAT      HEAT repeat
    0.00071   20.0   6.1          2    9.0   0.0    5.3  6  HEAT_EZ   HEAT-like repeat


Domain annotation for each model (and alignments):
>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.62   2.8e+03      32      45 ..      20      33 ..       5      54 .. 0.66
   2 !   48.0   0.4   2.8e-16   1.2e-12       6      85 ..      66     148 ..      62     151 .. 0.87
   3 ?   -0.0   0.0      0.26   1.2e+03      17      37 ..     226     250 ..     209     253 .. 0.64
   4 !   39.1   0.0   1.6e-13   7.3e-10       3      87 ..     251     336 ..     247     337 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.62
      HEAT_2 32 alpaLvellededp 45
                +++aL+++l +e+ 
  KKY16612.1 20 TVAALRKVLVSENV 33
                45555555555543 PP

  == domain 2  score: 48.0 bits;  conditional E-value: 2.8e-16
      HEAT_2   6 qalendpdpevrraairaLgrignpealpaLvelled..edpavRraaaeaLgaigdpealpaLkellddddd.dvvReaAae 85 
                 +a+ ++p+  ++++ + +Lg+ +++ a+p+L+++led  ed++ R++aaeaLga+gd  ++++L+ + dd+++  vvRe   +
  KKY16612.1  66 AAAFTSPSALLKHELAYCLGQTKHDAAIPYLRSVLEDreEDAMCRHEAAEALGALGDVGSVELLAFMRDDESEpTVVRETCDI 148
                 444499*****************************7766999***********************999999975688887655 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.26
      HEAT_2  17 rraairaLgrignp....ealpaLv 37 
                 r++a  aL ++++p    +a+pa+ 
  KKY16612.1 226 RYRAMFALRDLASPpdlpTAIPAVQ 250
                 6688888888887744445566554 PP

  == domain 4  score: 39.1 bits;  conditional E-value: 1.6e-13
      HEAT_2   3 aLlqalendpdpevrraairaLgrignpealpaLvelled..edpavRraaaeaLgaigdpe.alpaLkellddddddvvReaAaeaL 87 
                 aL +   +d++   r++++ + g++ +p ++p Lv +l++  e ++vR++aaeaLg +g ++ + + Lk  + +d+++vvRe+++ aL
  KKY16612.1 251 ALSAGF-TDSSALFRHEIAFVFGQLSHPASIPSLVTVLSNlqEASMVRHEAAEALGSLGGEAgVEDTLKT-FINDPEQVVRESVIVAL 336
                 445555.799****************************7665889*************975516688887.66899*******99887 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         4   1.8e+04      18      25 ..      21      28 ..      18      29 .. 0.75
   2 !   12.7   0.0   3.7e-05      0.17       3      27 .]      78     102 ..      76     102 .. 0.93
   3 !   12.5   0.2   4.1e-05      0.18       2      21 ..     110     129 ..     110     168 .. 0.87
   4 !    9.0   0.1   0.00057       2.6       2      24 ..     226     252 ..     225     255 .. 0.90
   5 !    8.5   0.0   0.00085       3.8       2      26 ..     264     288 ..     263     289 .. 0.93
   6 !   13.6   0.1   1.9e-05     0.083       1      19 [.     296     314 ..     296     315 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4
                HHHHHHHC CS
    HEAT_PBS 18 ipaLleaL 25
                ++aL+++L
  KKY16612.1 21 VAALRKVL 28
                78888887 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHCTSGGGHHHHHHHCTC CS
    HEAT_PBS   3 raAakaLgqlgdeeaipaLleaLqd 27 
                 ++ a+ Lgq ++++aip L+ +L+d
  KKY16612.1  78 HELAYCLGQTKHDAAIPYLRSVLED 102
                 789********************98 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 4.1e-05
                 HHHHHHHHHHCTSGGGHHHH CS
    HEAT_PBS   2 RraAakaLgqlgdeeaipaL 21 
                 R++Aa+aLg+lgd  ++++L
  KKY16612.1 110 RHEAAEALGALGDVGSVELL 129
                 9************6666665 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.00057
                 HHHHHHHHHHCTS....GGGHHHHHHH CS
    HEAT_PBS   2 RraAakaLgqlgd....eeaipaLlea 24 
                 R++A++aL  l +    + aipa +++
  KKY16612.1 226 RYRAMFALRDLASppdlPTAIPAVQAL 252
                 9****************9999998876 PP

  == domain 5  score: 8.5 bits;  conditional E-value: 0.00085
                 HHHHHHHHHHCTSGGGHHHHHHHCT CS
    HEAT_PBS   2 RraAakaLgqlgdeeaipaLleaLq 26 
                 R++ a+  gql ++++ip L+ +L 
  KKY16612.1 264 RHEIAFVFGQLSHPASIPSLVTVLS 288
                 99*******************9996 PP

  == domain 6  score: 13.6 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHHHCTSGGGHH CS
    HEAT_PBS   1 vRraAakaLgqlgdeeaip 19 
                 vR++Aa+aLg lg e+ ++
  KKY16612.1 296 VRHEAAEALGSLGGEAGVE 314
                 9*************88776 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.3   5.8e+03      17      30 ..      38      51 ..      37      52 .. 0.85
   2 ?   -1.6   0.0         1   4.6e+03       5      26 ..      65      86 ..      62      86 .. 0.74
   3 !    8.4   0.0   0.00065       2.9       2      29 ..      93     122 ..      92     124 .. 0.89
   4 ?   -1.4   0.0      0.94   4.2e+03      12      26 ..     137     152 ..     128     154 .. 0.64
   5 ?   -2.1   0.0       1.5   6.8e+03      17      29 ..     226     238 ..     224     238 .. 0.86
   6 ?   -0.9   0.0      0.64   2.9e+03       7      28 ..     254     275 ..     249     276 .. 0.81
   7 !    7.1   0.0    0.0017       7.6       3      27 ..     281     307 ..     280     309 .. 0.79
   8 ?    4.6   0.0     0.011        47       7      24 ..     319     336 ..     315     338 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.3
                HHHHHHHHHHHHHC CS
        HEAT 17 ReaAakaLgalaev 30
                R  A+ +L +la++
  KKY16612.1 38 RFRALFSLKHLASQ 51
                778999***99986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1
                HHHHHT-SSHHHHHHHHHHHHH CS
        HEAT  5 llkllsDpspeVReaAakaLga 26
                +  + ++ps+      a++Lg+
  KKY16612.1 65 IAAAFTSPSALLKHELAYCLGQ 86
                6667778888888888999996 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00065
                 HHHHHHHHT-..SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsD..pspeVReaAakaLgalae 29 
                 +P l + l+D  +++  R  Aa+aLgal  
  KKY16612.1  93 IPYLRSVLEDreEDAMCRHEAAEALGALGD 122
                 68899999999999*************975 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.94
                 SSHH.HHHHHHHHHHH CS
        HEAT  12 pspe.VReaAakaLga 26 
                 ++p  VRe++  aL +
  KKY16612.1 137 SEPTvVRETCDIALDR 152
                 5666359999777765 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHH CS
        HEAT  17 ReaAakaLgalae 29 
                 R+ A  aL +la+
  KKY16612.1 226 RYRAMFALRDLAS 238
                 899999**99986 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 0.64
                 HHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   7 kllsDpspeVReaAakaLgala 28 
                    +D+s+  R   a  +g+l+
  KKY16612.1 254 AGFTDSSALFRHEIAFVFGQLS 275
                 5578999999999999999985 PP

  == domain 7  score: 7.1 bits;  conditional E-value: 0.0017
                 HHHHHHHT-..SSHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsD..pspeVReaAakaLgal 27 
                 P l++ ls   +++ VR  Aa+aLg l
  KKY16612.1 281 PSLVTVLSNlqEASMVRHEAAEALGSL 307
                 666666666668899**********98 PP

  == domain 8  score: 4.6 bits;  conditional E-value: 0.011
                 HHHT-SSHHHHHHHHHHH CS
        HEAT   7 kllsDpspeVReaAakaL 24 
                 + ++Dp+  VRe+++ aL
  KKY16612.1 319 TFINDPEQVVRESVIVAL 336
                 457**********99777 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.069   3.1e+02       4      54 ..      38      86 ..      36      87 .. 0.75
   2 !    9.0   0.0   0.00045         2      23      55 .]      86     120 ..      81     120 .. 0.83
   3 ?   -0.9   0.0      0.56   2.5e+03      33      47 ..     128     145 ..     127     150 .. 0.73
   4 ?    2.0   0.1     0.068     3e+02       7      54 ..     229     273 ..     224     274 .. 0.71
   5 !    5.0   0.1     0.008        36      25      55 .]     275     307 ..     248     307 .. 0.75
   6 !    4.9   0.0    0.0087        39       2      20 ..     295     310 ..     294     336 .. 0.58

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.069
     HEAT_EZ  4 RraAawaLGrlaggepellqp..lvpeilpaLlalLnddsd.eVRaaAagaLgn 54
                R+ A+  L  la++ p++ ++  ++++i +a+      +++ + +   a++Lg+
  KKY16612.1 38 RFRALFSLKHLASQHPPTSRTfpAIDAIAAAFT-----SPSaLLKHELAYCLGQ 86
                888999997799999999988667777777777.....5552668888888876 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00045
     HEAT_EZ  23 qplvpeilpaLlalLnddsd.eV.RaaAagaLgnl 55 
                 q+ +++++p+L + L+d +  +  R  Aa aLg+l
  KKY16612.1  86 QTKHDAAIPYLRSVLEDREEdAMcRHEAAEALGAL 120
                 5567899**********7773669*********87 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.56
     HEAT_EZ  33 LlalLnddsd..eV.Raa 47 
                 Lla+++dd++  +V R++
  KKY16612.1 128 LLAFMRDDESepTVvRET 145
                 889999988755667776 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.068
     HEAT_EZ   7 AawaLGr.laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 A  aL r la   p++l++++p ++ aL a+ +d+s++ R   a  +g+
  KKY16612.1 229 AMFAL-RdLA--SPPDLPTAIP-AVQALSAGFTDSSALFRHEIAFVFGQ 273
                 66677.4477..7899999999.88888888888887767666666665 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.008
     HEAT_EZ  25 lvpeilpaLlalLnd..dsdeVRaaAagaLgnl 55 
                  +p+ +p L+  L++  + ++VR  Aa aLg l
  KKY16612.1 275 SHPASIPSLVTVLSNlqEASMVRHEAAEALGSL 307
                 456666666666666546779999999999976 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.0087
     HEAT_EZ   2 rvRraAawaLGrlaggepe 20 
                  vR+ Aa aLG+l    +e
  KKY16612.1 295 MVRHEAAEALGSLG---GE 310
                 59999999**9643...22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 2395.94
//
Query:       KKY16613.1  [L=2410]
Description: putative sister chromatid cohesion protein mis4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.6e-41  139.8   1.2      2e-39  135.5   1.0    3.1  2  Nipped-B_C    Sister chromatid cohesion C-terminus
    2.3e-39  135.4   0.0    4.5e-39  134.4   0.0    1.5  1  Pyr_redox_2   Pyridine nucleotide-disulphide oxidoreductase
    5.9e-12   46.0   0.0    3.6e-09   37.0   0.0    3.0  2  Pyr_redox     Pyridine nucleotide-disulphide oxidoreductase
    5.6e-09   36.1   0.0    3.8e-08   33.5   0.2    2.4  2  Cohesin_HEAT  HEAT repeat associated with sister chromatid co
    6.5e-06   25.3   0.1    2.1e-05   23.7   0.1    2.0  1  EF-hand_1     EF hand
    3.3e-05   24.0   0.0     0.0015   18.6   0.0    3.2  2  Cnd1          non-SMC mitotic condensation complex subunit 1
    5.2e-05   22.9   0.3    0.00031   20.4   0.3    2.4  2  EF-hand_6     EF-hand domain
    0.00051   19.4   0.2     0.0012   18.2   0.2    1.7  1  EF-hand_5     EF hand
    0.00059   18.5   0.4     0.0022   16.6   0.1    2.1  2  Adaptin_N     Adaptin N terminal region
     0.0013   18.8   0.8      0.096   13.0   0.0    4.2  4  HEAT          HEAT repeat
     0.0027   18.1   0.1      0.011   16.2   0.1    2.1  1  EF-hand_7     EF-hand domain pair
  ------ inclusion threshold ------
      0.026   14.1   1.3        2.3    7.7   0.0    3.0  3  CLASP_N       CLASP N terminal


Domain annotation for each model (and alignments):
>> Nipped-B_C  Sister chromatid cohesion C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.43   6.4e+02       9      32 ..     889     912 ..     888     916 .. 0.90
   2 !  135.5   1.0   1.3e-42     2e-39       6     188 ..    1370    1549 ..    1365    1551 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.43
                 HHHHHHHHTSS-HHHHHHHHHHHH CS
  Nipped-B_C   9 lkdilecalspdsqvrlaAlevvs 32 
                 +k i +c+++p+  vr +Al+++ 
  KKY16613.1 889 MKAIFRCTTDPSPMVRDSALSLIG 912
                 5899*****************986 PP

  == domain 2  score: 135.5 bits;  conditional E-value: 1.3e-42
                  HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHT-S-GGGTHHHHHHHTT-SSHHHHHHHHHHHHHHHHHSHHHHHHTHHHHHHHHHHHHHH....H- CS
  Nipped-B_C    6 qrYlkdilecalspdsqvrlaAlevvslilrqGLvhPvqcvptLialetdpdesirsrAdkllqeleekyegfleskalqgirlafqlqkkia.sss 101 
                   ++l+ i+ +a+   +q +l+A +v+++i+rqGL+hP++c  +L+alet+++  i+++A++++++l++++e+++e+++++++  af +qk++  ++s
  KKY16613.1 1370 AQFLQPIITIATRRLDQSALTATRVIASINRQGLIHPKECASALVALETSTNVIISKIAVDTHRSLHQQHESMFEREYMKAVYEAFFYQKNVIgDAS 1466
                  68*****************************************************************************************999999 PP

                  TTTG.......GG---HHHHHHHHH.--SHHHHHHHHHHHHHHH.H..HTSSTT--HHHHHHHHHHHHHHHHCS--EEHHHHHHHHHHH. CS
  Nipped-B_C  102 gaklrrsasetesptallsslysll.rsnkqsrrkflsslvklfdf..esesdaesekshlsfllfladnLahfpYqtqdEvlyvihhid 188 
                  ga++       ++  ++l++l++++  sn ++ +kfls+lv++ +f  ++    ++  + + f++f+++n+a+++Y  ++++++vi h++
  KKY16613.1 1467 GANA-------RPYVSKLRFLFDIVkMSNTKYVKKFLSNLVSRSTFdlAKLGARQDLLDAVLFARFVMQNIAFLEYGRVEDLIHVIGHME 1549
                  9988.......899***********99**************97655555556789999******************************98 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   0.0     3e-42   4.5e-39       2     279 ..    1874    2192 ..    1873    2213 .. 0.87

  Alignments for each domain:
  == domain 1  score: 134.4 bits;  conditional E-value: 3e-42
                   SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH...HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC.. CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
  Pyr_redox_2    2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias...evvkklnqgielllgeevvkidpgkkkvklekkke.. 92  
                   ++v++G G+A +a+ ++l++  + vt+v + +++++++++l++a +g+ e+++ ++   + v ++  +  +l++ e+ +id+ +k v++++  +  
   KKY16613.1 1874 KLVILGTGWASVALLKQLNAGDYHVTVV-SPENHFLFTPMLPSATVGTLEFRSLVEpvrRIVHRVHGH--FLKA-EAEDIDFSEKLVEVSQV-Spn 1964
                   79**************************.888899999**************9777665333333333..4444.899******88888654.458 PP

                   ..TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T..................SEEEEES-SHHHHHHHHHHHHHT-.. CS
                   ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxx.. RF
  Pyr_redox_2   93 ..gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp..................krivvvGgGyiGvElAaalaklgk.. 166 
                     ++++ + ydklv+  G++++  g++G+ en+ +l +++++a+++k k l                    ++vv GgG++GvE+Aa+l ++    
   KKY16613.1 1965 geKKHFYLPYDKLVIGVGCTTNPHGVKGL-ENCNFL-KSIRDAREIKNKVLHnlelaclpttsdeerrrlLSFVVSGGGPTGVEFAAELYDMLNed 2058
                   88999999*********************.999999.****************************99766667***************97764447 PP

                   .............EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCE....EEESEEEE-S-EEES-HHCS CS
                   .............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  167 .............evtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgee....idadlvvvavGvrpstelle 245 
                                 v++++ r ++l+++d++ls+++ee++ k++v+v+++++v e+++++  +  + e+g++    +++  +++++Gv      ++
   KKY16613.1 2059 llrsfprilrneiSVHVIQSRGHILNTYDEALSKYAEERFAKDDVNVMTNSRVLEVQPDKI-IFSQKEEGKVvtkeLPMGFCLWSTGVAQTEFCKK 2153
                   77788888888878**********************************************8.55666666668999*************9999988 PP

                   ..HCCT-EEEETTEEE--TTSBE...SSTTEEE-GGGCT CS
                   ..xxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxx RF
  Pyr_redox_2  246 ..eklglelderggivvdeflrt...nvpgiyaiGDvag 279 
                      klg + ++  ++++d +lr       ++ya+GD+  
   KKY16613.1 2154 iaAKLGDAQTNLHALETDTHLRLvgaPLGDVYAVGDCST 2192
                   9999999999***********95443699********93 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.016        24       1      38 [.    1874    1913 ..    1874    1923 .. 0.88
   2 !   37.0   0.0   2.4e-12   3.6e-09       2      69 ..    2035    2117 ..    2034    2129 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.016
                  EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS..TTS CS
   Pyr_redox    1 kvvvvGgGyiglElAgalaelgkkVtvversdkll..rll 38  
                  k+v++G G+  + l + l++   +Vtvv  ++++l  ++l
  KKY16613.1 1874 KLVILGTGWASVALLKQLNAGDYHVTVVSPENHFLftPML 1913
                  68********************************955555 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 2.4e-12
                  EEEECSSHHHHHHHHHH...............HHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEE CS
   Pyr_redox    2 vvvvGgGyiglElAgal...............aelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegs 69  
                   vv GgG +g+E+A++l                +   +V+v++ + ++l+ +De++sk+ +e++ k  ++v++n++v e++ +
  KKY16613.1 2035 FVVSGGGPTGVEFAAELydmlnedllrsfpriLRNEISVHVIQSRGHILNTYDEALSKYAEERFAKDDVNVMTNSRVLEVQPD 2117
                  69***************9999988888887554444789****************************************9855 PP

>> Cohesin_HEAT  HEAT repeat associated with sister chromatid cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.2   2.5e-11   3.8e-08       3      42 .]     871     911 ..     869     911 .. 0.93
   2 ?   -1.6   0.0       2.3   3.5e+03      22      36 ..     928     942 ..     927     947 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 2.5e-11
                   HHHHHHH-GGGGGSH.HHHHHHHHHHHSS-HHHHHHHHHHH CS
  Cohesin_HEAT   3 lsslvekdpsiLsap.evldtiarrltDsspsVRdAaLell 42 
                   + sl+e dp++L+ +  ++++i r+ tD+sp+VRd+aL+l+
    KKY16613.1 871 IVSLLEVDPNLLDKEpGIMKAIFRCTTDPSPMVRDSALSLI 911
                   5589*********9989**********************98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.3
                   HHHHHHHSS-HHHHH CS
  Cohesin_HEAT  22 tiarrltDsspsVRd 36 
                   ti r++ Dss+ VR+
    KKY16613.1 928 TIFRCFGDSSVGVRK 942
                   5668999*******7 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   1.4e-08   2.1e-05       2      26 ..    2247    2271 ..    2246    2274 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.4e-08
                  HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1    2 lkeiFrefDkDgdGkIdfeEfkell 26  
                  ++++F+ +DkD++G++df+E+ ell
  KKY16613.1 2247 VDKLFEQYDKDKSGTLDFNELHELL 2271
                  799******************9998 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.021        32      59      82 ..     888     911 ..     847     917 .. 0.65
   2 !   18.6   0.0     1e-06    0.0015       1      91 [.     902     996 ..     902    1060 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.021
        Cnd1  59 flselaklleDenprVvanalaal 82 
                 +++ + ++ +D++p+V+++al+++
  KKY16613.1 888 IMKAIFRCTTDPSPMVRDSALSLI 911
                 555555555555555555555443 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1e-06
        Cnd1   1 liRalairtlg..cirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekg..flselaklleDenprVvanalaalteiseksen 91 
                 ++R  a+  +g      p+l+++ +  + +++ D++  VRk ++ +   +++ +  ++    + +++++ ++D++++V+ +a+  l+e++  + +
  KKY16613.1 902 MVRDSALSLIGkyISITPKLLDEGCHTIFRCFGDSSVGVRKKCINLSRDIYRTEQRQDLRiaISDMILQRIQDPEDSVSGLARQTLEELWLSELT 996
                 688889999999555679************************************9999988566777899********************98643 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       9.3   1.4e+04      18      28 ..    1654    1664 ..    1654    1667 .. 0.84
   2 !   20.4   0.3   2.1e-07   0.00031       2      26 ..    2247    2271 ..    2246    2279 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 9.3
   EF-hand_6   18 daeElrkalrk 28  
                  da+El k+l+k
  KKY16613.1 1654 DAKELGKVLTK 1664
                  789******95 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 2.1e-07
   EF-hand_6    2 lreaFklfDkdgdGkidaeElrkal 26  
                  ++++F+++Dkd++G++d++El  +l
  KKY16613.1 2247 VDKLFEQYDKDKSGTLDFNELHELL 2271
                  5789*****************9887 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2   8.4e-07    0.0012       2      24 ..    2248    2270 ..    2247    2272 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 8.4e-07
                  HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5    2 kdtFqaiDlNgDGkIskeELktl 24  
                  +++F++ D++++G++++ EL +l
  KKY16613.1 2248 DKLFEQYDKDKSGTLDFNELHEL 2270
                  579*****************886 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   1.5e-06    0.0022     102     184 ..     870     957 ..     839    1049 .. 0.66
   2 ?   -3.0   0.0       1.3     2e+03     181     251 ..    1123    1188 ..    1117    1192 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.5e-06
                 HHCCC-..-CCCH...HHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH.HCCCC CS
   Adaptin_N 102 vLssir..vpela...edlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleei.kkndr 184
                 ++ s+   +p+l+   + +++ai+++ +d+sp+vr +A+  i k ++++p+ll +     i   + d+++gv    ++l   i + ++r
  KKY16613.1 870 SIVSLLevDPNLLdkePGIMKAIFRCTTDPSPMVRDSALSLIGKYISITPKLLDEG-CHTIFRCFGDSSVGVRKKCINLSRDIyRTEQR 957
                 55555444555554445566666666666666666666666666666666666665.66666666666666666666665555422222 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.3
                  CCCCCCCHHHHHHHCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHH CS
   Adaptin_N  181 kndrlllkllpklvrrLcnllteldpwlqvkiiklltrlarqepeerskkellesllnllqssnnaVllet 251 
                  k+d+l  +l ++ v+++  ++  l+  ++  ++++ ++l+++ p+++  k++l++++++l +   +Vl et
  KKY16613.1 1123 KSDDL--SLFQSVVSIFHSVIPHLSAMAKPLLVDVQRKLFESIPQLP--KQVLDEVTACLWTI-HSVLRET 1188
                  56677..89999999999999999999999999**************..88999999999754.3455555 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       0.6   8.9e+02       1      30 [.     848     877 ..     848     877 .. 0.91
   2 !   13.0   0.0   6.4e-05     0.096       1      28 [.     888     915 ..     888     918 .. 0.89
   3 ?   -2.2   0.0       4.9   7.3e+03       5      21 ..     929     945 ..     927     947 .. 0.85
   4 ?   -2.2   0.1         5   7.5e+03      17      28 ..    1275    1286 ..    1273    1287 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.6
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 ++ +l++ ++++  + R+ ++k+++ l+ev
  KKY16613.1 848 IIRILINSINSDQVKTRSRSLKSIVSLLEV 877
                 67899999*****************99985 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 6.4e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 ++ ++ ++ +Dpsp VR++A+  +g+ +
  KKY16613.1 888 IMKAIFRCTTDPSPMVRDSALSLIGKYI 915
                 788999*99**************99865 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 4.9
                 HHHHHT-SSHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAa 21 
                 + ++  D+s  VR+ ++
  KKY16613.1 929 IFRCFGDSSVGVRKKCI 945
                 778899********997 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 5
                  HHHHHHHHHHHH CS
        HEAT   17 ReaAakaLgala 28  
                  R+ A+ +Lg ++
  KKY16613.1 1275 RAIALDSLGSIC 1286
                  999*******99 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   7.2e-06     0.011       5      35 ..    2248    2278 ..    2244    2327 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7.2e-06
   EF-hand_7    5 keaFkelDtdgdgyldkeellrllrkifqga 35  
                     F+++D+d++g ld +el++ll +i+++ 
  KKY16613.1 2248 DKLFEQYDKDKSGTLDFNELHELLVQIDSKL 2278
                  567*******************999887665 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2      0.03        45      39     118 ..     382     459 ..     371     521 .. 0.75
   2 ?    7.7   0.0    0.0015       2.3     125     208 ..     842     919 ..     833     924 .. 0.87
   3 ?   -1.6   0.1       1.1   1.7e+03      97     162 ..     966    1026 ..     937    1065 .. 0.56

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.03
     CLASP_N  39 vpedaveelleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqal 118
                  pe+++++l   l++++e ++  +++Lr+t+ +++  +  + a+    +l  +++++l+++ +l  ++K+   + a +a+
  KKY16613.1 382 FPEEMSSKLPRFLQKIIEDLIIPVAELRSTGKTAATFTAAKSARDHLLKLVTQSKRFLKLFTDLHMKMKDT--EYAINAV 459
                 689999999999***************************************************99999974..4444444 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0015
     CLASP_N 125 asfsprilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfweffkvwP 208
                 +++ ++i+++l + ++   v++R+ s++ +  ll+  +   + l+++ ++   +k++ ++ +D++p VR++a s++ ++ ++ P
  KKY16613.1 842 CKYFNHIIRILINSINSDQVKTRSRSLKSIVSLLEVDP---NLLDKEPGI---MKAIFRCTTDPSPMVRDSALSLIGKYISITP 919
                 67778899999999999999999999999999999999...888888865...*******************999998888887 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.1
     CLASP_N   97 ptLlkllgdtKkiisqnanqalaallsnasfsprilqvlsvalqdKnvqpReysaiwLkilltrfe 162 
                  +++l++++d  + +s  a q+l+ l+ +     ++ q+  +  +d +++++  +++  +il++  +
  KKY16613.1  966 DMILQRIQDPEDSVSGLARQTLEELWLS-----ELTQISAADDVDDSARAKVAVSNQTEILVRTLQ 1026
                  3444555555555555555555555532.....334444444444455555555544444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.28u 0.32s 00:00:01.60 Elapsed: 00:00:00.54
# Mc/sec: 13465.13
//
Query:       KKY16614.1  [L=433]
Description: putative 60s ribosome subunit biogenesis protein nop53 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-99  334.0  22.9      2e-99  333.7  22.9    1.1  1  Nop53     Nop53 (60S ribosomal biogenesis)


Domain annotation for each model (and alignments):
>> Nop53  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.7  22.9  1.1e-103     2e-99       1     398 []      15     398 ..      15     398 .. 0.85

  Alignments for each domain:
  == domain 1  score: 333.7 bits;  conditional E-value: 1.1e-103
       Nop53   1 SRkgKkaWRKniDitdveegLeevreeeritGgvlsekkdeeLFvvDtkgdeelkkkarkkkkkpLksdeiLaqrsavpavsakrkrkka......... 90 
                 SRkgKkaWRKn+Di++v++gLe++r ee+i+Gg++sek++eeLF+vDt g+e +++++ +k +kpLk+deiLaqrs vp v+ +rkr+++         
  KKY16614.1  15 SRKGKKAWRKNVDISEVQQGLENLR-EEIIQGGPISEKPSEELFAVDTIGSEAIQRAY-NKVHKPLKADEILAQRSVVPGVD-TRKRSTSsritdgvie 110
                 9************************.9***************************7776.7889*****************99.66676667******** PP

       Nop53  91 ...kkkkkkkvskkelarlrklakrkkkgekkkeksakeakkksgsyDlWaeeeeeeeeekkktklstlekkkkvkrPktlkkkpislsalp....ave 182
                    k++k+++vskke +rl+++a+r+ +g+   ++++ e++  s+++DlWa+++e +     +t  ++++k++++++P +l++kpis+ a +    av 
  KKY16614.1 111 pssKRHKSNWVSKKEVQRLKQIAARNGNGTL--SSENLEEDGTSSKFDLWAAPAEAPV----TTSSEYIPKPRTKVAPASLRQKPISMVAEGksvpAVA 203
                 **99999999**************9999933..3444455667778****99766544....357899********************999999999** PP

       Nop53 183 vphaGkSYNPsfedhqell....qkaveaEkkrekeeeklerkrekiaekaataeareeelseekdegleeeeeeeeeeeeeeeeeeeeseeeeklnap 277
                  p+aG+SYNPsfed+++ll    +kaveaEk+r+++e k ++ +++  e+a++ e+      + ++    +e            +e++e e+e+ l   
  KKY16614.1 204 NPKAGTSYNPSFEDWDDLLstegRKAVEAEKQRLEDERKAAELQARLNEAAKDPEDGSF---DNDE----SE------------WEGFETENEKPLH-L 282
                 *********************************************88664443333333...3333....44............5566555545555.6 PP

       Nop53 278 vkkkpkrKTkaqRnkekrrkeeekeekeekkekkkeaqlerlkeikkevaekekeraeaaearkkekrkkkaekkklkrrklgkhkvpepdlevqlsdE 376
                 +kk+p+rKT +qRnk+krrke+e++  +ek++ +k+aq+ + ++  ++ +  +++r          ++ ++ ++  l+rr lgk  +p+++lev l+dE
  KKY16614.1 283 TKKRPERKTPSQRNKAKRRKEAERLTLHEKRMARKKAQALSSNSKPSSDKSLATTRSPS-----PDDTISSVDDTRLRRRTLGKAPIPDKPLEVLLPDE 376
                 7999***************************9999999987777666655555555444.....33333445999************************ PP

       Nop53 377 LsdSLRtLKPeGNLlkDrfksL 398
                 L+dSLR+L+PeGNLl Drf++L
  KKY16614.1 377 LQDSLRRLRPEGNLLNDRFRNL 398
                 ********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1103  (0.0615204); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.51
# Mc/sec: 2555.66
//
Query:       KKY16615.1  [L=782]
Description: putative pre-mrna-splicing factor cef1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-56  192.2   3.4    1.1e-56  192.2   3.4    3.7  3  Myb_Cef          pre-mRNA splicing factor component
    9.8e-23   80.1   4.5    1.3e-11   44.5   0.7    2.8  2  Myb_DNA-binding  Myb-like DNA-binding domain
    4.8e-21   74.8   4.7    7.7e-14   51.7   1.3    3.4  2  Myb_DNA-bind_6   Myb-like DNA-binding domain
     0.0092   16.1   0.2       0.14   12.3   0.0    2.7  2  Rap1_C           TRF2-interacting telomeric protein/Rap1 - C 


Domain annotation for each model (and alignments):
>> Myb_Cef  pre-mRNA splicing factor component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   5.6         2     9e+03      80     126 ..     153     199 ..     144     205 .. 0.62
   2 ?   -3.8   5.8       1.7   7.5e+03      97     126 ..     263     292 ..     238     325 .. 0.64
   3 !  192.2   3.4   2.4e-60   1.1e-56       1     225 [.     418     629 ..     418     638 .. 0.92

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2
     Myb_Cef  80 ivvpeeeeeee.eeeeeeeekveeDaadidarkkaereaeeekelkrr 126
                 i ++e+e+e + +e ++  ++++  +a ++ar+++ +e ++ + l++r
  KKY16615.1 153 IDLDEDEKE-MlSEARARLANTQGKKAKRKARERQLEESRRLAVLQKR 199
                 556666654.33333334555556666666666666666666666665 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.7
     Myb_Cef  97 eekveeDaadidarkkaereaeeekelkrr 126
                 ++  +eD  d+++rk+++  + e ++ + r
  KKY16615.1 263 RKGDQEDDGDRKKRKNEKSSQSELAAAAAR 292
                 334455555555555555555555444444 PP

  == domain 3  score: 192.2 bits;  conditional E-value: 2.4e-60
     Myb_Cef   1 TpntvlatPfrt.a.kaegaTprrg.v..atPlrTplRDkLniNeees.llvgetpreekqrqkeakeqLrsgLasLPkPkn.dyei.vvpeeeeeeee 91 
                 Tpn+ +atPfr+ +   +gaTp rg    atP+rTp RD+++iNe+ + +l ++tp++ k+++k+ + q+r++L++LPkPk+ ++e+ ++p+e +e   
  KKY16615.1 418 TPNP-MATPFRQgGaGVVGATPIRGtGpgATPMRTP-RDNFAINENGGaMLPYQTPQDLKMHEKAVRTQIRAKLSALPKPKEtEWELeELPSELPE--- 511
                 9***.*******74689*******9559********.*********99***************************************999****97... PP

     Myb_Cef  92 eeeeeeekveeDaadidarkkaereaeeekelkrrsqvvqrnLPRPaevneevlreslsspaneeapltdlqkaeelIkkEmltllhhDalknPlkskk 190
                 ++  + e +eeD+a+id+r++a r+a++++e++r+sqv+q++LPRP  v++++++e++++            ++e +I +E ++l+++Da k+P     
  KKY16615.1 512 TN-GDMEISEEDQAEIDRRNEAIRKAAADAEFRRQSQVLQKSLPRPKVVDVDAMKETVET---------LSDQIEAMISREAISLIANDARKFPP---- 596
                 22.25789***********************************************55544.........3458**********************.... PP

     Myb_Cef 191 gaaqheayleaspyeefedeeleaAkellkeEmev 225
                   ++    ++a+++ +++de+l++A+e++++E ++
  KKY16615.1 597 --KEGLVKGSAPKLSKISDEYLSKAREAIQAEYDT 629
                 ..5567899***********************876 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.7   2.8e-15   1.3e-11       2      46 .]       7      52 ..       6      52 .. 0.96
   2 !   36.4   0.2   9.9e-13   4.5e-09       3      46 .]      60     102 ..      58     102 .. 0.96

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 2.8e-15
                     SSSBHHHHHHHHHHHHHHT.TCHHHHHHHHTSS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 gkWteeEdelLleavkkhG.nrWkkIaerlggRtekqcrsrwrnyl 46
                     g Wt  Ede+L  av k+G n+W+++++ l  +t+kqc+ rw  +l
       KKY16615.1  7 GVWTNIEDEILKAAVSKYGlNQWARVSSLLARKTPKQCKARWTEWL 52
                     78****************************************9886 PP

  == domain 2  score: 36.4 bits;  conditional E-value: 9.9e-13
                      SSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrnyl 46 
                      +W++eEde+Ll + k++  +W++Ia  + gRt+ qc +r++++l
       KKY16615.1  60 EWSKEEDEKLLHLAKLMPTQWRTIAPIV-GRTATQCLERYQRLL 102
                      6***************************.6***********986 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   1.3   1.7e-17   7.7e-14       1      60 []       9      69 ..       9      69 .. 0.98
   2 !   33.1   0.1   1.1e-11   4.9e-08       1      43 [.      61     102 ..      61     112 .. 0.92

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 1.7e-17
  Myb_DNA-bind_6  1 WteeEdeiLlklvekyg.ndWknIaealnrRtpkqcfdrwknkLrpkisrkkwskeedirL 60
                    Wt  EdeiL   v+kyg n+W  +++ l+r+tpkqc+ rw + L+p i++++wskeed++L
      KKY16615.1  9 WTNIEDEILKAAVSKYGlNQWARVSSLLARKTPKQCKARWTEWLDPGIRKIEWSKEEDEKL 69
                    *****************89***************************************998 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 1.1e-11
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkL 43 
                     W++eEde+Ll l + +  +W++Ia + + Rt++qc +r+++ L
      KKY16615.1  61 WSKEEDEKLLHLAKLMPTQWRTIAPIVG-RTATQCLERYQRLL 102
                     ****************************.************44 PP

>> Rap1_C  TRF2-interacting telomeric protein/Rap1 - C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   3.1e-05      0.14      43      80 ..       4      48 ..       1      52 [. 0.82
   2 ?    0.3   0.0      0.17   7.7e+02      48      57 ..      61      88 ..      57     123 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.1e-05
      Rap1_C 43 nkrGiWteedDeaLka.......gderdlerlekkhgeerierRr 80
                 k G+Wt  +De+Lka       +++  ++ l   ++ +++++R+
  KKY16615.1  4 VKGGVWTNIEDEILKAavskyglNQWARVSSLLARKTPKQCKARW 48
                5679**********4444445669999999**************9 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.17
      Rap1_C 48 WteedDeaL..................k 57
                W++e+De+L                  +
  KKY16615.1 61 WSKEEDEKLlhlaklmptqwrtiapivG 88
                ********97766665555555555552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1597  (0.0890736); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 5192.96
//
Query:       KKY16616.1  [L=524]
Description: putative histone acetyltransferase esa1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-78  261.5   0.0    4.4e-78  261.0   0.0    1.2  1  MOZ_SAS         MOZ/SAS family
    7.3e-24   83.1   0.3    1.5e-23   82.2   0.3    1.6  1  zf-MYST         MYST family zinc finger domain
    8.1e-23   80.1   0.1    1.6e-22   79.1   0.1    1.6  1  Tudor-knot      RNA binding activity-knot of a chromodomain
  ------ inclusion threshold ------
      0.012   16.1   0.0      0.025   15.0   0.0    1.5  1  Acetyltransf_7  Acetyltransferase (GNAT) domain
       0.11   12.7   0.0       0.31   11.3   0.0    1.8  1  Acetyltransf_1  Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> MOZ_SAS  MOZ/SAS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.0   0.0   1.2e-81   4.4e-78       1     179 []     279     475 ..     279     475 .. 0.99

  Alignments for each domain:
  == domain 1  score: 261.0 bits;  conditional E-value: 1.2e-81
     MOZ_SAS   1 ppGkeiYrkeklsvfevdGekeklycqnLcllaklFldhktlyydvepFlfYvlteadeegahivGyFskekesaeeynlaCilvlPpyqrkgyGklli 99 
                 ppG+eiYr++ +s+fevdG++++++c+nLcll+klFldhktlyydv+pFlfYv++++d++g+h+vGyFskek sae+yn+aCil+lP+yqr+g+G+lli
  KKY16616.1 279 PPGNEIYRDDFISFFEVDGRRQRTWCRNLCLLSKLFLDHKTLYYDVDPFLFYVMCTRDAHGCHLVGYFSKEKDSAEGYNVACILTLPQYQRHGFGRLLI 377
                 8************************************************************************************************** PP

     MOZ_SAS 100 efsYeLskrekkigtPekPlsdlgllsyrsywkeeilellkek..................ekkkisieeisektgikeeDiistleelkllkyakgk 179
                 +fsYeLskre+k+g+PekPlsdlgll yr+yw+e+++ell++                   +++++si+e+++ t+++e+D+ + le l +l+y+kg+
  KKY16616.1 378 SFSYELSKREGKLGSPEKPLSDLGLLGYRQYWRETLIELLSDPsklpakpshvsldnptggHAHSTSISELASLTSMTEKDVHEQLEVLGCLRYQKGQ 475
                 ****************************************98899***************9999******************************9975 PP

>> zf-MYST  MYST family zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.3   4.1e-27   1.5e-23       1      55 []     220     274 ..     220     274 .. 0.99

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 4.1e-27
     zf-MYST   1 vkniekieiGeyeiktWYfSpYPeelankekLyvCefClkYmksakelerHkkkC 55 
                 v+n++++++G++ei++WYfSpYP+e+++ + +y+ efCl+Y+ s+k+++rH++kC
  KKY16616.1 220 VRNLNRVQMGKHEIEPWYFSPYPQEFTDADMVYIDEFCLSYFGSEKSFRRHRQKC 274
                 89***************************************************** PP

>> Tudor-knot  RNA binding activity-knot of a chromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.1   4.6e-26   1.6e-22       1      55 []      27      80 ..      27      80 .. 0.97

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 4.6e-26
                --TTTEEEEEETTSCEEEEEEEEEEETSSCEEEEEEETTS-CCC-EEEETTTEES CS
  Tudor-knot  1 levgckvlvrkkdgelrkAeilsirekkgkyeYYVHYeefNkRlDeWVsaeridl 55
                l++g+k++v+k dge rkAeils++++kg+  +YVHY+efNkRlDeWV+a+ridl
  KKY16616.1 27 LRIGVKAFVEK-DGEKRKAEILSVQQRKGSLNFYVHYVEFNKRLDEWVPASRIDL 80
                579********.*****************************************96 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0     7e-06     0.025      15      49 ..     343     382 ..     325     410 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7e-06
                     EEEEEEEEES.....TCTEE...EEE-GGGTTSSHHHHHHHH..T CS
  Acetyltransf_7  15 vGfialslld.....aeitr...laVdpeyrgkGiGraLlea..a 49 
                     vG+ + +  +     +   +   + ++p+y+++G Gr L+ +  +
      KKY16616.1 343 VGYFSKE--KdsaegY---NvacILTLPQYQRHGFGRLLISFsyE 382
                     3443322..1344333...334599***************97431 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.5e-05      0.31      44      93 ..     342     388 ..     286     392 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.5e-05
                     EEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTT CS
  Acetyltransf_1  44 liGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareeg 93 
                     l+G+ s  k+     + + +  +   p+y+++G G++L+    e  ++eg
      KKY16616.1 342 LVGYFSKEKDSA---EGYNVACILTLPQYQRHGFGRLLISFSYELSKREG 388
                     677775555555...6777778899**************99999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 3369.20
//
Query:       KKY16617.1  [L=1288]
Description: putative pentatricopeptide repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      5e-39  132.3   5.3    1.8e-09   37.7   0.0   12.4 13  PPR_2        PPR repeat family
    1.7e-32  111.3   0.7     0.0014   18.7   0.1   10.8 12  PPR_3        Pentatricopeptide repeat domain
    2.1e-19   68.3  11.9     0.0011   19.1   0.0   11.9 13  PPR          PPR repeat
    1.6e-17   62.9   0.0      1e-05   25.1   0.0    7.6  7  PPR_1        PPR repeat
    2.3e-13   50.0  13.7    9.7e-10   38.2   0.0    5.2  5  PPR_long     Pentacotripeptide-repeat region of PRORP
    6.2e-07   29.8   0.0    2.8e-05   24.5   0.0    3.5  3  RPM2         Mitochondrial ribonuclease P subunit (RPM2)
     0.0028   17.6   0.1        1.8    8.6   0.0    3.8  3  Mad3_BUB1_I  Mad3/BUB1 homology region 1
     0.0059   17.2   0.3      0.029   15.0   0.1    2.4  2  AIRS         AIR synthase related protein, N-terminal domain
     0.0079   15.7   0.0      0.015   14.7   0.0    1.4  1  Evf          Virulence factor Evf
  ------ inclusion threshold ------
      0.053   13.2   0.5        3.1    7.5   0.0    3.2  3  MiaE_2       tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like
       0.22   12.4  12.6         36    5.6   0.3    7.5  6  TPR_14       Tetratricopeptide repeat
        2.7    8.6  11.3        1.1    9.8   0.2    4.9  4  TPR_19       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.2e-05     0.019       2      48 ..     267     318 ..     266     320 .. 0.84
   2 ?    5.7   0.1     0.011        17       5      45 ..     389     429 ..     388     434 .. 0.79
   3 ?    2.3   0.0      0.13     2e+02       9      27 ..     521     539 ..     514     553 .. 0.85
   4 ?    5.0   0.0     0.019        29      16      48 ..     846     878 ..     844     880 .. 0.90
   5 ?    2.4   0.0      0.13   1.9e+02       8      45 ..     917     954 ..     912     958 .. 0.89
   6 !    6.2   0.0     0.008        12      20      46 ..     968     994 ..     965     996 .. 0.91
   7 !   37.7   0.0   1.2e-12   1.8e-09       1      50 []     984    1033 ..     984    1033 .. 0.97
   8 ?   -2.8   0.2       5.2   7.8e+03      22      31 ..    1040    1049 ..    1040    1052 .. 0.85
   9 !   30.8   0.2   1.6e-10   2.4e-07       6      49 ..    1060    1104 ..    1058    1105 .. 0.95
  10 ?    0.3   0.0      0.57   8.5e+02       2      27 ..    1129    1155 ..    1110    1163 .. 0.67
  11 !   14.2   0.0   2.6e-05     0.038       4      47 ..    1168    1211 ..    1165    1214 .. 0.89
  12 !    8.6   0.0    0.0014       2.1       6      39 ..    1205    1238 ..    1203    1247 .. 0.92
  13 ?    2.0   0.0      0.17   2.5e+02       5      33 ..    1237    1265 ..    1236    1267 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-05
       PPR_2   2 dvvtyNtlIsglc.....kkgkveeAfklfneMkkrglePnsyTysilikgl 48 
                 ++ +yN+l+ +        + ++ + +++  +M +rg++ n+ Ty i+++ l
  KKY16617.1 267 SIDAYNALLIAAInvpsdADQAFAKVLDVQGDMIRRGVKANADTYAIMVQFL 318
                 5667888887777778777888999999********************9866 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.011
       PPR_2   5 tyNtlIsglckkgkveeAfklfneMkkrglePnsyTysili 45 
                 +y +lI +++k  +v++ ++++n M +     ++  + ++i
  KKY16617.1 389 VYESLIRACAKSYNVDDMCEVYNVMNSCHKVISPDGFYTMI 429
                 5889*********************9854445555555555 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.13
       PPR_2   9 lIsglckkgkveeAfklfn 27 
                 +Is+++ k+++++Af+++ 
  KKY16617.1 521 VISAFAAKKAYQKAFDFLT 539
                 79*************9976 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.019
       PPR_2  16 kgkveeAfklfneMkkrglePnsyTysilikgl 48 
                 ++ +++A++ f+ M++ g  P  +Ty  li++ 
  KKY16617.1 846 DNLLNDALSRFKNMRRVGRHPRYITYAKLITAA 878
                 67899*********************9999885 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.13
       PPR_2   8 tlIsglckkgkveeAfklfneMkkrglePnsyTysili 45 
                 ++ +++++ g+   A ++ ++    g  P++ T+   i
  KKY16617.1 917 AMVAAYLTLGDRAAAAQIHQDLLAMGAAPSANTFGLYI 954
                 7999*****************************97665 PP

  == domain 6  score: 6.2 bits;  conditional E-value: 0.008
       PPR_2  20 eeAfklfneMkkrglePnsyTysilik 46 
                  eA+k+f+     g+eP+s+ y+ li 
  KKY16617.1 968 TEAVKVFHRAIAEGVEPTSFLYNALIG 994
                 59**********************995 PP

  == domain 7  score: 37.7 bits;  conditional E-value: 1.2e-12
       PPR_2    1 pdvvtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikglck 50  
                  p ++ yN+lI  l k+++++++++ f eM+ ++++P+s+Ty +++++lc+
  KKY16617.1  984 PTSFLYNALIGKLGKARRIDDCLQYFAEMRAHNIRPTSVTYGTIVNALCR 1033
                  67899********************************************7 PP

  == domain 8  score: -2.8 bits;  conditional E-value: 5.2
       PPR_2   22 AfklfneMkk 31  
                  A ++f+eM++
  KKY16617.1 1040 AEEMFDEMES 1049
                  7799****85 PP

  == domain 9  score: 30.8 bits;  conditional E-value: 1.6e-10
       PPR_2    6 yNtlIsglck.kgkveeAfklfneMkkrglePnsyTysilikglc 49  
                  yN++I+++++ k++  + +  ++ Mk++g+eP+ +Ty  l+++++
  KKY16617.1 1060 YNSMIQYFLNtKRDRGKVMAYYERMKSKGIEPTMHTYKLLVDAYA 1104
                  *********86999****************************997 PP

  == domain 10  score: 0.3 bits;  conditional E-value: 0.57
       PPR_2    2 dvvtyNtlIsgl.ckkgkveeAfklfn 27  
                    v y +lI++  c + +++ A ++fn
  KKY16617.1 1129 EAVHYASLIHAKgCVAHDIQAAREIFN 1155
                  456666677766666667777777776 PP

  == domain 11  score: 14.2 bits;  conditional E-value: 2.6e-05
       PPR_2    4 vtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikg 47  
                  + y +l  +l+ + +v e  +l+++Mk r++++++y  ++li+g
  KKY16617.1 1168 CLYQALCEALVANHQVAETEQLLQDMKARNVQMTPYITNTLIHG 1211
                  56778888999*******************************99 PP

  == domain 12  score: 8.6 bits;  conditional E-value: 0.0014
       PPR_2    6 yNtlIsglckkgkveeAfklfneMkkrglePnsy 39  
                   NtlI+g +  g++ +A   +++  + g eP++y
  KKY16617.1 1205 TNTLIHGWASTGNLAKAQAAYDQIGQTGREPSTY 1238
                  5****************************99876 PP

  == domain 13  score: 2.0 bits;  conditional E-value: 0.17
       PPR_2    5 tyNtlIsglckkgkveeAfklfneMkkrg 33  
                  ty ++  +++  ++ + A ++ +eM +r 
  KKY16617.1 1237 TYEAMTRAYLSVEDHQGAASVVSEMMQRQ 1265
                  8999999******************9885 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0024       3.7      34      58 ..     252     276 ..     239     281 .. 0.72
   2 !    9.6   0.0   0.00063      0.93       8      56 ..     261     314 ..     254     321 .. 0.72
   3 ?    1.3   0.0      0.24   3.6e+02      18      42 ..     390     414 ..     388     423 .. 0.88
   4 ?   -1.3   0.0       1.6   2.4e+03      13      41 ..     467     495 ..     465     498 .. 0.83
   5 !   10.4   0.0   0.00036      0.54       4      38 ..     857     891 ..     855     893 .. 0.91
   6 ?   -0.4   0.0      0.82   1.2e+03      21      55 ..     918     952 ..     915     959 .. 0.86
   7 !   10.7   0.0   0.00029      0.43      32      62 ..     968     998 ..     952     999 .. 0.86
   8 !   18.0   0.0   1.5e-06    0.0022       3      58 ..    1009    1065 ..    1007    1067 .. 0.86
   9 !   18.7   0.1   9.3e-07    0.0014      18      60 ..    1060    1103 ..    1054    1105 .. 0.90
  10 !   12.6   0.0   7.1e-05      0.11       1      60 [.    1116    1177 ..    1116    1180 .. 0.88
  11 !   13.4   0.0   4.1e-05     0.061       2      49 ..    1189    1236 ..    1188    1245 .. 0.90
  12 ?    1.5   0.0      0.22   3.2e+02      17      43 ..    1237    1263 ..    1236    1266 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0024
       PPR_3  34 alevlermkkkgikPtvvtyNailg 58 
                 +  v++    +gi P+++ yNa+l 
  KKY16617.1 252 IPAVFQLALSQGIVPSIDAYNALLI 276
                 3468888888999999999999985 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00063
       PPR_3   8 rkgikldvvtYthLLtayanag.nkkla....levlermkkkgikPtvvtyNai 56 
                  +gi +++  Y++LL a++n+  + + a    l v++ m   g+k + +ty ++
  KKY16617.1 261 SQGIVPSIDAYNALLIAAINVPsDADQAfakvLDVQGDMIRRGVKANADTYAIM 314
                 689999999999999999988423333311226788999999999999999766 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.24
       PPR_3  18 YthLLtayanagnkklalevlermk 42 
                 Y +L++a+a+  n +++ ev + m 
  KKY16617.1 390 YESLIRACAKSYNVDDMCEVYNVMN 414
                 99*****************998885 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 1.6
       PPR_3  13 ldvvtYthLLtayanagnkklalevlerm 41 
                  d  tY  L++ y++ag   + l  ++++
  KKY16617.1 467 TDFKTYAGLIKSYILAGQDTRGLAFFDEV 495
                 67889************988877777776 PP

  == domain 5  score: 10.4 bits;  conditional E-value: 0.00036
       PPR_3   4 remerkgikldvvtYthLLtayanagnkklalevl 38 
                 ++m r g  +  +tY  L+ta+a+ag+++ ++ vl
  KKY16617.1 857 KNMRRVGRHPRYITYAKLITAAARAGKRNVVEDVL 891
                 789999999999*****************999987 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 0.82
       PPR_3  21 LLtayanagnkklalevlermkkkgikPtvvtyNa 55 
                 +  ay   g++ +a ++ + +   g +P+  t+  
  KKY16617.1 918 MVAAYLTLGDRAAAAQIHQDLLAMGAAPSANTFGL 952
                 67899999***********9999999999999865 PP

  == domain 7  score: 10.7 bits;  conditional E-value: 0.00029
       PPR_3  32 klalevlermkkkgikPtvvtyNailgvigg 62 
                   a +v+ r   +g++Pt   yNa++g  g+
  KKY16617.1 968 TEAVKVFHRAIAEGVEPTSFLYNALIGKLGK 998
                 46999*********************98876 PP

  == domain 8  score: 18.0 bits;  conditional E-value: 1.5e-06
       PPR_3    3 lremerkgikldvvtYthLLtayanagnkklalevlermkkk.gikPtvvtyNailg 58  
                  + em + +i++  vtY ++ +a  ++ +++ a+e +++m+     kP    yN++++
  KKY16617.1 1009 FAEMRAHNIRPTSVTYGTIVNALCRVSDERFAEEMFDEMESMpNYKPRPAPYNSMIQ 1065
                  579************************************974266777777777765 PP

  == domain 9  score: 18.7 bits;  conditional E-value: 9.3e-07
       PPR_3   18 YthLLtayanag.nkklalevlermkkkgikPtvvtyNailgvi 60  
                  Y+++++ + n++ ++  ++   ermk kgi+Pt+ ty  +  ++
  KKY16617.1 1060 YNSMIQYFLNTKrDRGKVMAYYERMKSKGIEPTMHTYKLLVDAY 1103
                  99999999987538899*********************999988 PP

  == domain 10  score: 12.6 bits;  conditional E-value: 7.1e-05
       PPR_3    1 silremerkgikldvvtYthLLtay.anagnkklalevlermkkkgik.PtvvtyNailgvi 60  
                  +i++e+++ g +++ v Y +L++a   +a + ++a e+++ +   g++ P  + y a+ ++ 
  KKY16617.1 1116 RIIEEIKAGGQQPEAVHYASLIHAKgCVAHDIQAAREIFNSVLSGGLTqPQACLYQALCEAL 1177
                  699*********************646899************99998449999999987766 PP

  == domain 11  score: 13.4 bits;  conditional E-value: 4.1e-05
       PPR_3    2 ilremerkgikldvvtYthLLtayanagnkklalevlermkkkgikPt 49  
                  +l++m+++++++  +  ++L+++ a +gn+  a    +++ + g +P+
  KKY16617.1 1189 LLQDMKARNVQMTPYITNTLIHGWASTGNLAKAQAAYDQIGQTGREPS 1236
                  89*******************************999999888888886 PP

  == domain 12  score: 1.5 bits;  conditional E-value: 0.22
       PPR_3   17 tYthLLtayanagnkklalevlermkk 43  
                  tY ++ +ay  + + + a  v+ +m +
  KKY16617.1 1237 TYEAMTRAYLSVEDHQGAASVVSEMMQ 1263
                  899*********************976 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.2   0.00051      0.77       2      28 ..     389     415 ..     388     417 .. 0.91
   2 ?    0.0   0.0      0.89   1.3e+03       2      25 ..     471     494 ..     470     498 .. 0.88
   3 ?   -2.3   0.0         5   7.4e+03       6      23 ..     521     538 ..     521     540 .. 0.89
   4 ?   -2.1   0.0       4.1   6.1e+03      15      30 ..     848     863 ..     846     863 .. 0.83
   5 ?   -3.1   0.0       8.7   1.3e+04       2      15 ..     870     883 ..     869     891 .. 0.83
   6 ?   -1.9   0.0       3.6   5.3e+03      18      31 .]     969     982 ..     966     982 .. 0.84
   7 !   18.6   0.0   1.1e-06    0.0016       2      31 .]     988    1017 ..     987    1017 .. 0.93
   8 !   19.1   0.0   7.1e-07    0.0011       1      28 [.    1022    1049 ..    1022    1051 .. 0.96
   9 ?    2.0   0.4      0.21   3.1e+02      18      31 .]    1076    1089 ..    1059    1089 .. 0.83
  10 ?    1.2   0.0      0.37   5.5e+02       2      19 ..    1095    1112 ..    1094    1114 .. 0.89
  11 ?   -0.8   0.0       1.6   2.4e+03      10      31 .]    1177    1198 ..    1171    1198 .. 0.81
  12 ?    4.6   0.0     0.031        46       4      25 ..    1206    1227 ..    1203    1232 .. 0.88
  13 ?    4.6   0.0      0.03        45       2      29 ..    1237    1264 ..    1236    1266 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00051
         PPR   2 tynslIsgycknGkleeAlelfkeMke 28 
                 +y slI++++k+ +++++ e+++ M +
  KKY16617.1 389 VYESLIRACAKSYNVDDMCEVYNVMNS 415
                 5889*******************9965 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.89
         PPR   2 tynslIsgycknGkleeAlelfke 25 
                 ty  lI++y  +G+    l +f+e
  KKY16617.1 471 TYAGLIKSYILAGQDTRGLAFFDE 494
                 7888**********9999999998 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 5
         PPR   6 lIsgycknGkleeAlelf 23 
                 +Is+++ +  +++A++++
  KKY16617.1 521 VISAFAAKKAYQKAFDFL 538
                 69************9876 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 4.1
         PPR  15 kleeAlelfkeMkekG 30 
                 +l +Al+ fk M++ G
  KKY16617.1 848 LLNDALSRFKNMRRVG 863
                 67899999****9865 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 8.7
         PPR   2 tynslIsgycknGk 15 
                 ty  lI + +++Gk
  KKY16617.1 870 TYAKLITAAARAGK 883
                 78889******997 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 3.6
         PPR  18 eAlelfkeMkekGi 31 
                 eA+++f++ + +G+
  KKY16617.1 969 EAVKVFHRAIAEGV 982
                 9******9888875 PP

  == domain 7  score: 18.6 bits;  conditional E-value: 1.1e-06
         PPR    2 tynslIsgycknGkleeAlelfkeMkekGi 31  
                   yn+lI  ++k+++++++l++f eM+ ++i
  KKY16617.1  988 LYNALIGKLGKARRIDDCLQYFAEMRAHNI 1017
                  6************************98875 PP

  == domain 8  score: 19.1 bits;  conditional E-value: 7.1e-07
         PPR    1 vtynslIsgycknGkleeAlelfkeMke 28  
                  vty ++++++c+  + + A+e+f+eM++
  KKY16617.1 1022 VTYGTIVNALCRVSDERFAEEMFDEMES 1049
                  8*************************97 PP

  == domain 9  score: 2.0 bits;  conditional E-value: 0.21
         PPR   18 eAlelfkeMkekGi 31  
                  +++ ++++Mk+kGi
  KKY16617.1 1076 KVMAYYERMKSKGI 1089
                  67889999999997 PP

  == domain 10  score: 1.2 bits;  conditional E-value: 0.37
         PPR    2 tynslIsgycknGkleeA 19  
                  ty  l+++y++   +++A
  KKY16617.1 1095 TYKLLVDAYASLEPVDMA 1112
                  9*********99998887 PP

  == domain 11  score: -0.8 bits;  conditional E-value: 1.6
         PPR   10 ycknGkleeAlelfkeMkekGi 31  
                  ++ n ++ e ++l+++Mk +++
  KKY16617.1 1177 LVANHQVAETEQLLQDMKARNV 1198
                  556667788899******9875 PP

  == domain 12  score: 4.6 bits;  conditional E-value: 0.031
         PPR    4 nslIsgycknGkleeAlelfke 25  
                  n+lI+g ++ G+l +A   +++
  KKY16617.1 1206 NTLIHGWASTGNLAKAQAAYDQ 1227
                  9**************9887776 PP

  == domain 13  score: 4.6 bits;  conditional E-value: 0.03
         PPR    2 tynslIsgycknGkleeAlelfkeMkek 29  
                  ty ++ ++y +  +++ A ++  eM ++
  KKY16617.1 1237 TYEAMTRAYLSVEDHQGAASVVSEMMQR 1264
                  999**********************987 PP

>> PPR_1  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.86   1.3e+03       1      14 [.     302     315 ..     302     318 .. 0.89
   2 ?   -2.3   0.3       2.6   3.9e+03      10      33 ..     390     413 ..     389     414 .. 0.86
   3 !   14.3   0.0   1.6e-05     0.024       2      34 .]     981    1013 ..     980    1013 .. 0.95
   4 !   25.1   0.0   6.8e-09     1e-05       2      34 .]    1016    1048 ..    1015    1048 .. 0.96
   5 ?    4.6   0.0     0.018        27       1      17 [.    1087    1103 ..    1087    1106 .. 0.94
   6 ?    0.4   0.0      0.37   5.5e+02       2      16 ..    1125    1139 ..    1124    1139 .. 0.88
   7 !    6.6   0.0    0.0042       6.2      11      29 ..    1206    1224 ..    1205    1228 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.86
                 SS----HHHHHHHH CS
       PPR_1   1 kGlkPdvvTYNtLI 14 
                 +G+k ++ TY +++
  KKY16617.1 302 RGVKANADTYAIMV 315
                 699*******9997 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.6
                 HHHHHHHHHHTS-HHHHHHHHHHH CS
       PPR_1  10 YNtLIdGlCkaGrvdeAfelfdeM 33 
                 Y +LI ++ k  +vd+ +e+ + M
  KKY16617.1 390 YESLIRACAKSYNVDDMCEVYNVM 413
                 8899*9999999999988888877 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 1.6e-05
                  S----HHHHHHHHHHHHHTS-HHHHHHHHHHHH CS
       PPR_1    2 GlkPdvvTYNtLIdGlCkaGrvdeAfelfdeMe 34  
                  G++P+ + YN LI  l ka r+d+ ++ f eM+
  KKY16617.1  981 GVEPTSFLYNALIGKLGKARRIDDCLQYFAEMR 1013
                  9***********************999999996 PP

  == domain 4  score: 25.1 bits;  conditional E-value: 6.8e-09
                  S----HHHHHHHHHHHHHTS-HHHHHHHHHHHH CS
       PPR_1    2 GlkPdvvTYNtLIdGlCkaGrvdeAfelfdeMe 34  
                  ++ P+ vTY t++++lC+  +   A+e+fdeMe
  KKY16617.1 1016 NIRPTSVTYGTIVNALCRVSDERFAEEMFDEME 1048
                  689*****************************7 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.018
                  SS----HHHHHHHHHHH CS
       PPR_1    1 kGlkPdvvTYNtLIdGl 17  
                  kG++P+  TY  L+d++
  KKY16617.1 1087 KGIEPTMHTYKLLVDAY 1103
                  79*************98 PP

  == domain 6  score: 0.4 bits;  conditional E-value: 0.37
                  S----HHHHHHHHHH CS
       PPR_1    2 GlkPdvvTYNtLIdG 16  
                  G +P +v Y +LI++
  KKY16617.1 1125 GQQPEAVHYASLIHA 1139
                  56899********96 PP

  == domain 7  score: 6.6 bits;  conditional E-value: 0.0042
                  HHHHHHHHHTS-HHHHHHH CS
       PPR_1   11 NtLIdGlCkaGrvdeAfel 29  
                  NtLI+G    G++ +A   
  KKY16617.1 1206 NTLIHGWASTGNLAKAQAA 1224
                  9***************865 PP

>> PPR_long  Pentacotripeptide-repeat region of PRORP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.3     0.014        21      14     102 ..     236     320 ..     227     336 .. 0.78
   2 ?    3.0   0.3     0.037        55      86     149 ..     384     446 ..     351     478 .. 0.57
   3 ?   -1.1   0.0      0.66   9.9e+02     111     140 ..     854     883 ..     837     902 .. 0.71
   4 !   38.2   0.0   6.5e-13   9.7e-10      16     171 ..     955    1104 ..     944    1112 .. 0.89
   5 !    9.7   0.3   0.00034      0.51      69     185 ..    1145    1264 ..    1107    1272 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHT-HHHHHHHHHHHHHSSS---HHHHHHHHHHHHHC.HCSTTTHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHH CS
    PPR_long  14 lrrqldkCskekDaaaAlelydkavaegvrlaqyhynvllylcskaeaaseskknkalargfevfeamkakgvspnEatvtalarlaaa 102
                 l+ ++ + +k++  a+  ++++ a ++g+  +   yn+ll    +   +  s   +a a+++ v  +m  +gv++n  t++ +++  a+
  KKY16617.1 236 LSEHIVQLAKDHHYAEIPAVFQLALSQGIVPSIDAYNALLIAAINV--P--SDADQAFAKVLDVQGDMIRRGVKANADTYAIMVQFLAS 320
                 5556666667777777778999999999999999999998655444..3..33446899999999999999999999999999987765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.037
                 ----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-..S---HHHHHHHHHHHHHTT-HHHHHHHHH CS
    PPR_long  86 vspnEatvtalarlaaakedgdlafelvkemekag..vsPrLRsyaPaLaayckagdadkalevee 149
                 + p+E ++ +l+r +a++ + d   e+ + m++    +sP    +  +++a+  + ++++a+++ e
  KKY16617.1 384 AFPAE-VYESLIRACAKSYNVDDMCEVYNVMNSCHkvISP--DGFYTMIQAFQPSANLGQAVQAYE 446
                 33443.3445555555555555444444444432211223..234444444444444444444443 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.66
                 HHHHHHHHH-S---HHHHHHHHHHHHHTT- CS
    PPR_long 111 elvkemekagvsPrLRsyaPaLaayckagd 140
                 +  k+m+++g +Pr  +ya +++a  +ag+
  KKY16617.1 854 SRFKNMRRVGRHPRYITYAKLITAAARAGK 883
                 445778888888888888887777666654 PP

  == domain 4  score: 38.2 bits;  conditional E-value: 6.5e-13
                  HHHHHHHHHT-.HHHHHHHHHHHHHSSS---HHHHHHHHHHHHHC.HCSTTTHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHH CS
    PPR_long   16 rqldkCskekD.aaaAlelydkavaegvrlaqyhynvllylcskaeaaseskknkalargfevfeamkakgvspnEatvtalarlaaakedgdlafe 111 
                  ++l++ +++ D a++A++++ +a+aegv+ ++  yn+l+  + ka+          +++ ++ f++m+a++++p   t+ +++      +d   a+e
  KKY16617.1  955 TTLKESTRTFDeATEAVKVFHRAIAEGVEPTSFLYNALIGKLGKAR---------RIDDCLQYFAEMRAHNIRPTSVTYGTIVNALCRVSDERFAEE 1042
                  578888888775889************************9998883.........478899************************************ PP

                  HHHHHHHH.-S---HHHHHHHHHHHHHT.T-HHHHHHHHHHHHHCT----HHHHHHHHHHHH CS
    PPR_long  112 lvkemeka.gvsPrLRsyaPaLaaycka.gdadkaleveehlkasgveleEaelaaLLkvsa 171 
                  +  eme++ + +Pr   y+ +++ + ++ +d +k ++  e++k++g+e++ + ++ L ++ a
  KKY16617.1 1043 MFDEMESMpNYKPRPAPYNSMIQYFLNTkRDRGKVMAYYERMKSKGIEPTMHTYKLLVDAYA 1104
                  *****976599***********99987626899*****************999998887655 PP

  == domain 5  score: 9.7 bits;  conditional E-value: 0.00034
                  HHHHHHHHHHHHHHHTT.----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCT----..HHH CS
    PPR_long   69 kalargfevfeamkakg.vspnEatvtalarlaaakedgdlafelvkemekagvsPrLRsyaPaLaayckagdadkaleveehlkasgvele..Eae 162 
                  + +++++e+f+++ + g  +p    + al    +a+++  ++++l ++m++ +v+      + +++ +  +g++ ka ++ +++ ++g e+   Ea 
  KKY16617.1 1145 HDIQAAREIFNSVLSGGlTQPQACLYQALCEALVANHQVAETEQLLQDMKARNVQMTPYITNTLIHGWASTGNLAKAQAAYDQIGQTGREPStyEAM 1241
                  3488999999999996615677888999999999999999999999999988776544455789999999999999999999999998887622556 PP

                  HHHHHHHHHHTT-HHHHHHHHHH CS
    PPR_long  163 laaLLkvsakagredkvYelLhk 185 
                    a L v  ++g +  v e++++
  KKY16617.1 1242 TRAYLSVEDHQGAASVVSEMMQR 1264
                  67899999999999999888876 PP

>> RPM2  Mitochondrial ribonuclease P subunit (RPM2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.9e-08   2.8e-05      27     118 ..     235     323 ..     215     324 .. 0.85
   2 ?   -1.2   0.0       1.8   2.7e+03      84     116 ..    1002    1034 ..     971    1036 .. 0.84
   3 ?   -0.2   0.0      0.84   1.3e+03      38      69 ..    1071    1102 ..    1061    1121 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.9e-08
        RPM2  27 tqikeiekiyekkeynkinalyksLkrneivpslelfekvLksivkrdlDnedidnklveLLtvyqDiisnklkPnkeiyeivlesLlkgsi 118
                   +++i +  ++++y +i a+++     +ivps++ ++  L++ ++   D+   d+ + ++L v  D+i   +k n+++y i+++ L ++++
  KKY16617.1 235 SLSEHIVQLAKDHHYAEIPAVFQLALSQGIVPSIDAYNALLIAAINVPSDA---DQAFAKVLDVQGDMIRRGVKANADTYAIMVQFLASRAL 323
                 556788888999******************************999988765...667788899*********************99988876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.8
        RPM2   84 lveLLtvyqDiisnklkPnkeiyeivlesLlkg 116 
                  + + L+ + ++   +++P++ +y  +++ L + 
  KKY16617.1 1002 IDDCLQYFAEMRAHNIRPTSVTYGTIVNALCRV 1034
                  556677777888888999999999999998775 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.84
        RPM2   38 kkeynkinalyksLkrneivpslelfekvLks 69  
                  k++  k+ a y+ +k  +i p +++++  +++
  KKY16617.1 1071 KRDRGKVMAYYERMKSKGIEPTMHTYKLLVDA 1102
                  56778899999999999999999999876665 PP

>> Mad3_BUB1_I  Mad3/BUB1 homology region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.55   8.2e+02      18      54 ..     364     401 ..     352     427 .. 0.49
   2 ?    3.1   0.0     0.061        91      40      69 ..     842     871 ..     810     885 .. 0.80
   3 !    8.6   0.0    0.0012       1.8      76     121 ..    1146    1191 ..    1130    1192 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.55
                  -THHHHHHHHHHHHHH-TT.-T.TT-HHHHHHHHHHHT CS
  Mad3_BUB1_I  18 DpLelwlryikwieesypq.sskesgllellerclkkf 54 
                  D L+l ++  +   +++pq +   + + +l+  c k +
   KKY16617.1 364 DSLSLAMKQFRTAVKTFPQnAFPAEVYESLIRACAKSY 401
                  55555555555555555552222233333333333322 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.061
                  TT-HHHHHHHHHHHTTTSGGGTT-HHHHHH CS
  Mad3_BUB1_I  40 esgllellerclkkfkdderYknDpRylkl 69 
                  + +  +ll+++l++fk+ +r  + pRy+ +
   KKY16617.1 842 SGRNDNLLNDALSRFKNMRRVGRHPRYITY 871
                  4555689********************976 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0012
                   TSS-HHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH CS
  Mad3_BUB1_I   76 lveepreifkflaskkiGtklalfYeewAellekkgrfkeAeevye 121 
                    ++ +reif+ ++s +  +  a +Y++ +e l ++++++e e++++
   KKY16617.1 1146 DIQAAREIFNSVLSGGLTQPQACLYQALCEALVANHQVAETEQLLQ 1191
                   45899*************************************9987 PP

>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.9e-05     0.029      26      71 ..     928     973 ..     888     993 .. 0.84
   2 ?   -2.8   0.0         7     1e+04      18      80 ..    1106    1165 ..    1093    1173 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHHHHTTTEEEEEEEEEEEECHHHHHHHHHHHHHHHTT- CS
        AIRS  26 akavavnlsDlaamGArPlalllslalpwleevvrglaeaaeelgv 71 
                 + a+a++ +Dl+amGA P a +  l + +l+e  r + ea e+++v
  KKY16617.1 928 RAAAAQIHQDLLAMGAAPSANTFGLYITTLKESTRTFDEATEAVKV 973
                 346778999**********999999999999999999999888765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 7
                  CTCCCCHHHHHHHHHHHHHHTTTEEEEEEEEEEEECHHHHHHHHHHHHHHHTT-EEEEEEEEE CS
        AIRS   18 vepvhfiGakavavnlsDlaamGArPlalllslalpwleevvrglaeaaeelgvplvgGdtsf 80  
                  +epv++    a+  ++  + a G +P a+ ++  +     v++++++a e ++  l gG t+ 
  KKY16617.1 1106 LEPVDM---AAAERIIEEIKAGGQQPEAVHYASLIHAKGCVAHDIQAAREIFNSVLSGGLTQP 1165
                  455555...666777777778888888755555555444456667777777777777776665 PP

>> Evf  Virulence factor Evf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     1e-05     0.015     104     141 ..     278     315 ..     261     330 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1e-05
         Evf 104 vleadspslksfakflqkqGdairlGlkknkdfystlt 141
                  ++  s++ + fak l+ qGd ir G+k n d y+ + 
  KKY16617.1 278 AINVPSDADQAFAKVLDVQGDMIRRGVKANADTYAIMV 315
                 45667788899***********************9765 PP

>> MiaE_2  tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0021       3.1      67      97 ..     367     397 ..     351     416 .. 0.82
   2 ?   -1.0   0.0      0.83   1.2e+03      82     120 ..     464     505 ..     446     555 .. 0.72
   3 ?    1.5   0.0      0.14   2.1e+02      63      98 ..    1211    1246 ..    1186    1264 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0021
                 HHHHGGGHHHHHHHHHTT--SSHHHHHHHHH CS
      MiaE_2  67 eeamePfvaavddfhkrtaPadwleslvkay 97 
                   am+ f +av  f +++ Pa+ +esl++a 
  KKY16617.1 367 SLAMKQFRTAVKTFPQNAFPAEVYESLIRAC 397
                 559*************************885 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.83
                 HTT--SSHHHHHHHHHH...HHHHHHHHHHHHCCCS-HHHHH CS
      MiaE_2  82 krtaPadwleslvkayv...gdsvaadfyrevaeyldadtre 120
                 ++ +  + + +l+k+y+    d+    f+ ev++ l+ +  e
  KKY16617.1 464 SNKTDFKTYAGLIKSYIlagQDTRGLAFFDEVSQSLEDSVDE 505
                 444445568899999984434777888999999988765544 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.14
                  T--HHHHHGGGHHHHHHHHHTT--SSHHHHHHHHHH CS
      MiaE_2   63 GveaeeamePfvaavddfhkrtaPadwleslvkayv 98  
                  G ++++ +   +aa+d+  +  +  + +e++ +ay+
  KKY16617.1 1211 GWASTGNLAKAQAAYDQIGQTGREPSTYEAMTRAYL 1246
                  77788889999**********99999*********6 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.11   1.7e+02      11      35 ..     360     384 ..     357     396 .. 0.79
   2 ?   -2.3   0.1       7.9   1.2e+04      11      23 ..     591     603 ..     587     606 .. 0.77
   3 ?    5.6   0.3     0.024        36       4      30 ..     915     941 ..     912     952 .. 0.84
   4 ?    2.3   0.0      0.27     4e+02      16      33 ..     966     983 ..     959     996 .. 0.74
   5 ?    1.4   0.1      0.51   7.6e+02       4      27 ..    1170    1193 ..    1145    1200 .. 0.90
   6 ?   -1.1   0.1       3.3   4.9e+03      12      29 ..    1213    1230 ..    1207    1247 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.11
      TPR_14  11 llalGdpdeAiallrralalaPdda 35 
                 l++ + +  A++ +r a++++P++a
  KKY16617.1 360 LAEDDSLSLAMKQFRTAVKTFPQNA 384
                 555566778*************995 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.9
      TPR_14  11 llalGdpdeAial 23 
                  l+ Gd+++A+a+
  KKY16617.1 591 ALRGGDLETARAY 603
                 5789999999987 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.024
      TPR_14   4 llalaeallalGdpdeAiallrralal 30 
                 l a+++a+l+lGd ++A+++ +++la 
  KKY16617.1 915 LDAMVAAYLTLGDRAAAAQIHQDLLAM 941
                 6799*******************9994 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.27
      TPR_14  16 dpdeAiallrralalaPd 33 
                 +  eA+++++ra+a + +
  KKY16617.1 966 EATEAVKVFHRAIAEGVE 983
                 6789*********97533 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.51
      TPR_14    4 llalaeallalGdpdeAiallrra 27  
                  ++al eal a+ + +e ++ll+++
  KKY16617.1 1170 YQALCEALVANHQVAETEQLLQDM 1193
                  7899999*********99999997 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 3.3
      TPR_14   12 lalGdpdeAiallrrala 29  
                  +  G++++A a+++++ +
  KKY16617.1 1213 ASTGNLAKAQAAYDQIGQ 1230
                  567999****99999744 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.1   1.6e+03       5      58 ..     439     502 ..     437     510 .. 0.62
   2 ?   -2.3   0.5       4.4   6.6e+03      32      52 ..     919     939 ..     915     948 .. 0.72
   3 ?    9.8   0.2   0.00077       1.1       5      53 ..    1145    1195 ..    1143    1205 .. 0.82
   4 ?    2.1   0.1       0.2   2.9e+02      38      61 ..    1215    1238 ..    1212    1246 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.1
      TPR_19   5 gdyaeAlalleq.alqe.........dpknaearllLAeallalgqldeAealLdalpeedpdd 58 
                 g+  +A + +++ al+          +  +    ++L++ ++ +gq +   a  d++ ++  d+
  KKY16617.1 439 GQAVQAYENYKNlALSSnatfsstrsNKTDFKTYAGLIKSYILAGQDTRGLAFFDEVSQSLEDS 502
                 5556666666663343323333333233377777889999999999988888888888877775 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.4
      TPR_19  32 AeallalgqldeAealLdalp 52 
                 + a+l lg+ ++A ++ ++l+
  KKY16617.1 919 VAAYLTLGDRAAAAQIHQDLL 939
                 567888888888877766665 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00077
      TPR_19    5 gdyaeAlalleqalqedpknaearl..lLAeallalgqldeAealLdalpe 53  
                   d ++A +++ ++l+    ++ a l  +L+eal+a+ q++e e+lL++  +
  KKY16617.1 1145 HDIQAAREIFNSVLSGGLTQPQACLyqALCEALVANHQVAETEQLLQDMKA 1195
                  589**********98855555555555*******************98765 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.2
      TPR_19   38 lgqldeAealLdalpeedpddary 61  
                  +g+l++A+a+ d++++  +  + y
  KKY16617.1 1215 TGNLAKAQAAYDQIGQTGREPSTY 1238
                  899*********999988876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.50
# Mc/sec: 7740.62
//
Query:       KKY16660.1  [L=482]
Description: hypothetical protein UCRPC4_g05843 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.6    8.5   8.0        0.2   12.0   1.6    2.5  2  ATXN-1_C  Capicua transcriptional repressor modulator
        3.5    7.0   6.6        0.9    8.9   1.8    2.1  2  DUF3246   Protein of unknown function (DUF3246)


Domain annotation for each model (and alignments):
>> ATXN-1_C  Capicua transcriptional repressor modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.6      0.92   8.2e+03      10      19 ..      31      39 ..      25      53 .. 0.55
   2 ?   12.0   1.6   2.2e-05       0.2       4      39 ..     111     144 ..     109     148 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.92
    ATXN-1_C 10 RssslssslS 19
                R+ +lsss+S
  KKY16660.1 31 RT-ALSSSVS 39
                44.3443333 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 2.2e-05
    ATXN-1_C   4 lGKpvsRssslssslSfalpppalgadslKaaVatl 39 
                 lGK+ sR ss+s  +S + +p +l++  lK  V t+
  KKY16660.1 111 LGKHRSRHSSSSGHSSKP-SPAPLSPPILKS-VETQ 144
                 8***********666644.5666*******9.8886 PP

>> DUF3246  Protein of unknown function (DUF3246)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.8    0.0001       0.9      42      95 ..      33      82 ..      12      91 .. 0.68
   2 ?   -0.2   0.2     0.062   5.5e+02      47      73 ..     354     394 ..     318     447 .. 0.51

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0001
     DUF3246 42 vstkaessitvvgtsstgsddddDdddetDceteietvPtgtttidptssgtit 95
                + + + ssi ++ ++s++sd  dDd  + D e  + t P +t      ++   t
  KKY16660.1 33 ALSSSVSSINMLDSESNSSDSSDDDLMDRDGEDTVFTTP-HTM---KAGNLFGT 82
                3344559999**************999999995477777.222...23444444 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.062
     DUF3246  47 e..............ssitvvgtsstgsddddDdddetDce 73 
                 +              s+  +++  s   ++    dd+ D e
  KKY16660.1 354 HsdpqsrestpvamnSTAPTAAEVSRKVNNKRRRDDDFDPE 394
                 12233333333222233333333333333333344555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3118.86
//
Query:       KKY16661.1  [L=786]
Description: putative elongation factor tu gtp binding domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.8e-50  169.8   0.0    8.6e-50  169.0   0.0    1.4  1  GTP_EFTU     Elongation factor Tu GTP binding domain
      4e-21   75.1   1.6    9.3e-21   73.9   1.6    1.6  1  HBS1_N       HBS1 N-terminus
    2.7e-10   40.5   0.0    1.7e-09   38.0   0.0    2.4  2  GTP_EFTU_D3  Elongation factor Tu C-terminal domain
    6.3e-08   32.7   0.0    2.1e-06   27.8   0.0    2.5  1  MMR_HSR1     50S ribosome-binding GTPase
    2.8e-06   27.6   0.1    7.4e-06   26.3   0.1    1.8  1  GTP_EFTU_D2  Elongation factor Tu domain 2
     0.0012   18.4   0.1      0.024   14.2   0.0    2.4  2  Ras          Ras family
     0.0021   18.3   0.1       0.65   10.2   0.0    2.8  2  Roc          Ras of Complex, Roc, domain of DAPkinase
     0.0074   15.7   0.0        1.2    8.6   0.0    2.7  1  SRPRB        Signal recognition particle receptor beta subuni
  ------ inclusion threshold ------
      0.083   12.4   0.1        1.6    8.2   0.1    2.7  2  FeoB_N       Ferrous iron transport protein B
       0.15   11.4   0.1       0.34   10.1   0.1    1.5  1  Septin       Septin


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.0   0.0   4.8e-53   8.6e-50       3     183 ..     378     584 ..     376     617 .. 0.89

  Alignments for each domain:
  == domain 1  score: 169.0 bits;  conditional E-value: 4.8e-53
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHST.............HCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHH CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgekaeeerv.............lDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevi 88 
                   n+++ighvD+GK+TL++rLly+++ai+++++++ ++++             lD+ +eErerg+Ti++a+ ++e  t+k+ ++++D+PGH+dF+ ++i
  KKY16661.1 378 AANFVVIGHVDAGKSTLMGRLLYDLKAIDSRTMEKYKKEAekigkgsfafawvLDQGSEERERGVTIDVATNKFE--TDKTSFTILDAPGHQDFVPNMI 474
                 67********************************9443334689*******************************..********************** PP

                 HHHHT-SEEEEEEETTTB.....STHHHHHHHHHHHHTTTE.EEEEEESCGST...HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTT CS
    GTP_EFTU  89 rglrvlDgavlvvdaveG.....vepqteevlrlalkegvp.iivfiNKmDrl...kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkg 178
                 +g++++D+avlv+da+ G      + qt+e++ la+++gv+ iiv++NKmD +   ++++  i++++   +      l ++g+k++ +  +v++S+l+g
  KKY16661.1 475 AGASQADFAVLVIDASTGrfesgLKGQTKEHALLARSLGVQrIIVAVNKMDAAhwsQDRFTDIQQQIA-AF------LISAGFKQQ-NLAFVPCSGLQG 565
                 ****************7777777******************9*************9************.55......568888885.9*********** PP

                 BTHH..............H CS
    GTP_EFTU 179 egvk..............t 183
                 +++               t
  KKY16661.1 566 DNILqksgdknaawyqggT 584
                 *987555555555555554 PP

>> HBS1_N  HBS1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   1.6   5.2e-24   9.3e-21       5      78 .]      11      90 ..       4      90 .. 0.83

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 5.2e-24
      HBS1_N  5 seddeeeeeee.........eLsdedqarLrscldevrevLgeeaskvtvtekqikeAlwkyyyDvekaldyllnkfkkkkpk 78
                +ed++++++ e          L++ d+++Lr ++ evr++Lg   ++ +vt+++i+e+lw+yyyD+ k++ yl+nk++++++k
  KKY16661.1 11 DEDYDNDFGSEagdgdgdgdGLTEHDREQLRMGTIEVRKQLG---PEFDVTDNDIQESLWHYYYDIAKTVTYLKNKRTQSQKK 90
                34444444444666777788**********************...66679***************************999876 PP

>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.1   3.8e+03      57      84 ..     653     680 ..     647     682 .. 0.82
   2 !   38.0   0.0   9.4e-13   1.7e-09      32     108 ..     715     785 ..     690     786 .] 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.1
                  BSS-SSCCSTT-CEEEEEEECCEEEE-- CS
  GTP_EFTU_D3  57 sekkpefvkpGdnvivevelikpialek 84 
                   ++ +e +  G+nv++++  i pi l +
   KKY16661.1 653 DNEPAEWAVAGQNVNLHLVDIDPIHLRS 680
                  5677899999*********999998765 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 9.4e-13
                  ESSS-EEEEEEEEEEECCSSTTSB-BSS-SSCCSTT-CEEEEEEECCEEEE--TTTHCCCCEEEEECTTCEEEEEEE CS
  GTP_EFTU_D3  32 yirtadvtgkvveLlskldkktekvsekkpefvkpGdnvivevelikpialekgseypqlGrFaiReggrTvaaGvv 108
                  +    +v+g++ +L+++ldk+t+ v +kkp++++pG  v+v+vel++ + le         r  +R +g+T+aaG+ 
   KKY16661.1 715 HRGRLHVAGRISQLVATLDKSTGAVIKKKPKVIQPGSLVQVQVELTRSVPLEAPA------RIVMRSEGHTIAAGIM 785
                  3345799************************************************......**************85 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.1e-09   2.1e-06       2     114 .]     381     523 ..     380     523 .. 0.71

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.1e-09
                 EEEEESTTSSHHHHHHHHH................T...............STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinalt................g...............ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgka 69 
                 ++++G+  +GKStL+ +l+                +               ++   +++ g+T+d+ + ++++++++++++D pG  +    +  + + 
  KKY16661.1 381 FVVIGHVDAGKSTLMGRLLydlkaidsrtmekykkEaekigkgsfafawvlDQGSEERERGVTIDVATNKFETDKTSFTILDAPG--H----QDFVPNM 473
                 689***************977777776666666550555556666665554577888999***********9999**********..3....2347777 PP

                 HHHHHCTSEEEEEEETT....TTCSHHHHHHHHHHHHH.TTSEEEEEEES CS
    MMR_HSR1  70 flaleeadlillvvdas....eeklkpldeeleellee.akkplilvlnk 114
                 ++   +ad ++lv+das    e++lk + +e + l ++   +++i+++nk
  KKY16661.1 474 IAGASQADFAVLVIDAStgrfESGLKGQTKEHALLARSlGVQRIIVAVNK 523
                 7777889********99777644455555554444433233445666665 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1   4.1e-09   7.4e-06       5      74 .]     622     685 ..     620     685 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 4.1e-09
                  EEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   5 lgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                   gr++sG ++ G+ ++i  +++   +++  i+++e+ +e+ ++avag+n+ + +  ++  + ++ Gd+++
   KKY16661.1 622 SGRIESGSVQNGEVIKI--MPS---GELAGIKGIEVDNEPAEWAVAGQNVNLHLVDIDPIH-LRSGDVVC 685
                  79***************..666...567**********************99999999999.99999997 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.12   2.1e+02       2      19 ..     381     398 ..     380     411 .. 0.89
   2 !   14.2   0.0   1.4e-05     0.024       9     149 ..     419     568 ..     416     572 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.12
                 EEEEESTTSSHHHHHHHH CS
         Ras   2 lvlvGdsavGKtslllrf 19 
                 +v++G    GK++l+ r 
  KKY16661.1 381 FVVIGHVDAGKSTLMGRL 398
                 69************9876 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.4e-05
                 TSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST.TTSE CS
         Ras   9 avGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvae.envp 106
                  +GK s+ + +v d+ +ee e  + +d  t+++e+d+   +++i+D  G ++f     +  ++a+ ++lv d +  +  + +k  ++e    a+   v+
  KKY16661.1 419 KIGKGSFAFAWVLDQGSEERERGVTIDVATNKFETDK--TSFTILDAPGHQDFVPNMIAGASQADFAVLVIDASTGRFESGLKGQTKEHALLARsLGVQ 515
                 69*********************99999999888775..6789***********999999**********99876544344443333332222233455 PP

                 .EEEEEETTTGGG.........G-SS-HHHHHHHHHHHTSEEEEEBTTTTCTH CS
         Ras 107 .ivLvGnKvDlee.........kravsteegeelakelglkfletSAktnenv 149
                  i++  nK+D ++         ++++ +   ++  k+++l+f+ +S  +  n+
  KKY16661.1 516 rIIVAVNKMDAAHwsqdrftdiQQQIAAFLISAGFKQQNLAFVPCSGLQGDNI 568
                 055556*******9999999999999999999999***********9999987 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.014        25       3      22 ..     382     401 ..     380     415 .. 0.85
   2 !   10.2   0.0   0.00036      0.65       9     119 ..     419     525 ..     417     526 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.014
                 EEESSTTSSHHHHHHCHCT- CS
         Roc   3 vlvGdsgvGKtsllkrfved 22 
                 v++G   +GK++l+ r++ d
  KKY16661.1 382 VVIGHVDAGKSTLMGRLLYD 401
                 89**************9876 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00036
                 TSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHH..H.HCHH...HHHHH CS
         Roc   9 gvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrs..s.enlk...eWlke 101
                 ++GK s++  +v d+ se+++  + +d++t++++      +    +k ++ i D  G+++f   +    ++a+ a+lv+d+++  + + lk   +    
  KKY16661.1 419 KIGKGSFAFAWVLDQGSEERERGVTIDVATNKFE------T----DKTSFTILDAPGHQDFVPNMIAGASQADFAVLVIDASTgrFeSGLKgqtKEHAL 507
                 68**************************998762......2....2468**************99999************6542232445411134444 PP

                 HHHHCSSS-EEEEEE-TT CS
         Roc 102 lkkvagkspvilvgnkiD 119
                 l +  g + +i+ +nk+D
  KKY16661.1 508 LARSLGVQRIIVAVNKMD 525
                 555566678888889998 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00065       1.2      36      84 ..     444     488 ..     376     493 .. 0.52

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00065
                 S-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEE CS
       SRPRB  36 essaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvD 84 
                    a++k+ +++++++t++D PGh+ +  +++      s++   v v+D
  KKY16661.1 444 IDVATNKF-ETDKTSFTILDAPGHQDFVPNMIAG---ASQADFAVLVID 488
                 33444555.6678889999999999888777766...444445555555 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.26   4.7e+02       3      20 ..     381     398 ..     379     405 .. 0.86
   2 ?    8.2   0.1   0.00091       1.6      32      60 ..     441     469 ..     440     540 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.26
                 EEEEESTTSSHHHHHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnal 20 
                 ++++G  ++Gk+tl+ +l
  KKY16661.1 381 FVVIGHVDAGKSTLMGRL 398
                 6899**********9877 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00091
                 TSSSEEEEEEEEETTEEEEEEE----SSS CS
      FeoB_N  32 GvtvekkegklklkgkeveivDlPGiYsl 60 
                 Gvt++ ++ k+++++++++i+D PG  ++
  KKY16661.1 441 GVTIDVATNKFETDKTSFTILDAPGHQDF 469
                 9************************7554 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00019      0.34       6      78 ..     380     472 ..     377     478 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00019
                 EEEEEEBTTSSCCCCCCTTSSS.S----.....................--------------S-EEEEEEEEETTCEEEEEEEE---BSSSSSH CS
      Septin   6 tlmvvGesglGkttlintlfet.dliee.....................ekleeasekkkktveikkkkvvieedgvklnltviDtpgfGdavdn 78 
                 + +v+G+   Gk+tl+  l+ + + i++                       l++ se+ ++ v+i+ ++++ e d  k  +t++D pg+ d+v n
  KKY16661.1 380 NFVVIGHVDAGKSTLMGRLLYDlKAIDSrtmekykkeaekigkgsfafaWVLDQGSEERERGVTIDVATNKFETD--KTSFTILDAPGHQDFVPN 472
                 7899************98875414555588999***********99998567778889999***********999..77899*********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       979  (0.0546043); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 5374.27
//
Query:       KKY16662.1  [L=1290]
Description: putative hsp70 chaperone [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.1e-260  866.0  11.4   1.1e-260  866.0  11.4    1.6  2  HSP70           Hsp70 protein
    1.3e-23   83.3   0.6    2.7e-23   82.2   0.6    1.6  1  FAD_binding_4   FAD binding domain
    5.2e-18   64.9   2.2    8.3e-17   61.0   0.4    2.2  2  MreB_Mbl        MreB/Mbl protein
     0.0068   15.4   0.5      0.046   12.7   0.2    2.0  2  DDR             Diol dehydratase reactivase ATPase-like domai
  ------ inclusion threshold ------
      0.085   13.3   3.2         17    5.9   0.0    3.7  3  FtsA            Cell division protein FtsA


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  866.0  11.4  3.1e-264  1.1e-260       1     598 [.      52     655 ..      52     656 .. 0.99
   2 ?   -9.6   7.7         5   1.8e+04     509     544 ..    1231    1268 ..    1205    1289 .. 0.33

  Alignments for each domain:
  == domain 1  score: 866.0 bits;  conditional E-value: 3.1e-264
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEEE CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkavv 99 
                 viGiDLGtt+s+v+vm++gk+e+i+n++gnr+tPs+vaFt++erlvG+aAk+q ++np++tvf++Kr+iGrkf+d++vq++ k++p++vv k +gk++v
  KKY16662.1  52 VIGIDLGTTYSCVGVMQKGKVEIIVNDQGNRITPSYVAFTDEERLVGDAAKNQYASNPTRTVFDIKRMIGRKFDDKDVQRDAKHFPFSVVPK-DGKPTV 149
                 79****************************************************************************************99.999999 PP

                 EEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXSS CS
       HSP70 100 eveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGgg 196
                 +ve+ g   +ftpe+isamvL k+ke+ae+ylgkkvt+av+tvPaYfnd+qRqatkdAg iAGLnvlR+vNepTAaa+aYGldk+ +er+++vyDlGgg
  KKY16662.1 150 NVEVGGSnkNFTPEEISAMVLGKMKEIAESYLGKKVTHAVVTVPAYFNDNQRQATKDAGIIAGLNVLRVVNEPTAAAIAYGLDKTGDERHIVVYDLGGG 248
                 999988777****************************************************************************************** PP

                 XEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEEEEEH CS
       HSP70 197 tfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdlseklsR 295
                 tfdvS+l++++Gvfev+aTagDthlGGedfD+++++h+v+ ++kk++ d++kd k + +lk+++ekaK++LSs  q ++++eie+++e gkd+se+l+R
  KKY16662.1 249 TFDVSLLSIDNGVFEVLATAGDTHLGGEDFDQRVMNHFVKLWNKKHNTDVTKDLKSMGKLKREVEKAKRTLSS--QMSTRIEIESFHE-GKDFSETLTR 344
                 *************************************************************************..8999999******.********** PP

                 HHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCCEEEEBESS-E CS
       HSP70 296 akfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqagvlsgeeevkdllllDvtpLsl 394
                 akfeel++dl+++tl+pve++lkdak++k+ei+++vlvGGstRiPkvq++++e+fgk++sk++npDeava+GAAvq+gvlsgee +++l+l+Dv+pL+l
  KKY16662.1 345 AKFEELNMDLFKKTLKPVEQVLKDAKISKSEINDIVLVGGSTRIPKVQSMIEEYFGKKASKNINPDEAVAYGAAVQGGVLSGEEGTEELVLMDVNPLTL 443
                 *************************************************************************************************** PP

                 EEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETTTCCEEE CS
       HSP70 395 gietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdketgkeee 493
                 giet+ggvmtkli+rnt+ipt+ksq+fstaadnq++v i+v++ger l+kdn+llg+fel+gippaprGvpqieV+f++danGil+vsa dk+tgk+e+
  KKY16662.1 444 GIETTGGVMTKLIPRNTVIPTRKSQIFSTAADNQPTVLIQVFEGERGLTKDNNLLGKFELTGIPPAPRGVPQIEVSFELDANGILKVSAGDKGTGKSES 542
                 *************************************************************************************************** PP

                 EEEECCSS.SBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...GGGSTHHHH....HHHHHHHHHHHCHTTSSCHHHHHHHHH CS
       HSP70 494 itieaseg.lseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleee...aekvseaek....ekvesaieeLkeeleeeekeeieakte 584
                 iti++++g ls+e+ie+mv +ae++aeedk+ +e+ie++n +e+++ sl++++++e   + k++e++k    e+v++++++L+e+++++ +e++ +++e
  KKY16662.1 543 ITITNDKGrLSQEDIERMVAEAEQYAEEDKAIREKIESRNGLENYAFSLKNQVNDEeglGGKIDEDDKetilEAVKETTDWLEENAATATAEDFDEQKE 641
                 ********9*********************************************9989999******999999************************** PP

                 HHHHHHHHHHHHHH CS
       HSP70 585 elkkvvekiaekly 598
                 +l++v+++i++kly
  KKY16662.1 642 KLSNVAYPITSKLY 655
                 *********99987 PP

  == domain 2  score: -9.6 bits;  conditional E-value: 5
                  H.....HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       HSP70  509 k.....mvkdaeesaeedkkkkeaieakneaeelvyslekk 544 
                  +     m  d+ee +++d   k +i+++n+  +   +++++
  KKY16662.1 1231 NdrkriMDVDMEEEDDDDD-DKLRINHENTHAHA--HAHDN 1268
                  1112223333333222222.11222222221111..11111 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.6   7.6e-27   2.7e-23       3     138 ..     698     831 ..     696     832 .. 0.95

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 7.6e-27
                    EEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEE.STTCSCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCG CS
  FAD_binding_4   3 avvrpeseeevaaalrlaneaglpvlvrGgGssll.gqavatggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgip 97 
                    + v+p++ +ev+++l +  + +  + v +gG++l+  q+  ++gv++dl ++++ + i e+++ a++++G  +g++++al++kgl +    g +++
     KKY16662.1 698 CSVQPSTSAEVSSVLSILIDSSCEFAVKSGGHGLNrNQSNVQDGVTIDLAKFKH-VRIAEDQQNAELGPGLLWGEAYRALEEKGLRVV--GGRVST 790
                    669********************************888878*************.789999*************************99..9***** PP

                    SBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4  98 gtvGGaiatnagGygsekyGlirdnvlglevvladGevvrl 138
                    ++vGG++++++++  s ++G  +dn+l++e+vl++ +v ++
     KKY16662.1 791 VGVGGLLMGGGISFLSGRHGWACDNILSFEIVLPNTTVATV 831
                    ***********************************999877 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.3   0.1    0.0085        31       3      25 ..      52      77 ..      50     113 .. 0.65
   2 !   61.0   0.4   2.3e-20   8.3e-17      91     316 ..     183     418 ..     161     424 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0085
                EEEEEE-SSEEEEEETTTE...EEEE CS
    MreB_Mbl  3 dlgiDLGtantlvyvkgkg...ivln 25
                 +giDLGt+   v v +kg   i++n
  KKY16662.1 52 VIGIDLGTTYSCVGVMQKGkveIIVN 77
                59********9998877773344454 PP

  == domain 2  score: 61.0 bits;  conditional E-value: 2.3e-20
                 SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEE.EE-SS-EEEEEEETTEEE.....EEEEES-SHHHHHHH CS
    MreB_Mbl  91 lskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgnmvv.diGggttevavislggiv.....tsksvrvaGdeldea 183
                  + ++ v++vP   ++ +r+A k+a   aG +   +++ep aAAi  gl+ +  + ++vv d+Gggt +v+++s+ + v     t+   +++G+++d+ 
  KKY16662.1 183 KKVTHAVVTVPAYFNDNQRQATKDAGIIAGLNVLRVVNEPTAAAIAYGLDKTGDERHIVVyDLGGGTFDVSLLSIDNGVfevlaTAGDTHLGGEDFDQR 281
                 3556789*******************************************99988887766*************98654222225667899*******9 PP

                 HHHH.HH...HHHSEE--H..HHHHHHHHHH-BSS--HHHH.EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH CS
    MreB_Mbl 184 iiky.ir...kkynlliGe..rtaekikieigsavkeeeee.kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektppeLaadivdr 275
                 ++++ ++   kk+n  + +  ++  k+k e+ +a+ + +++ +++i+     +g   + +++ ++ +e   + +++ ++ v++vL++++    ++i  +
  KKY16662.1 282 VMNHfVKlwnKKHNTDVTKdlKSMGKLKREVEKAKRTLSSQmSTRIEIESFHEGKDFSETLTRAKFEELNMDLFKKTLKPVEQVLKDAKIS-KSEI--N 377
                 98752433338999988873357789********9998888899******************************************98754.3444..6 PP

                 -EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHH CS
    MreB_Mbl 276 givltGGgallkgldkllseetglpvkvaedpltcvakGtg 316
                  ivl+GG++ +  ++++++e +g + +   +p ++va G++
  KKY16662.1 378 DIVLVGGSTRIPKVQSMIEEYFGKKASKNINPDEAVAYGAA 418
                 79************************************986 PP

>> DDR  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.2   1.3e-05     0.046     118     167 ..     223     271 ..     165     274 .. 0.85
   2 ?    0.2   0.0     0.082   2.9e+02     264     297 ..     363     398 ..     311     403 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.3e-05
         DDR 118 aemAilGalttPGtekplailDlGaGstDaalieeegevkavhlAGAGem 167
                 + +Ai   l   G e+ +++ DlG+G+ D +l++ ++ v    lA AG++
  KKY16662.1 223 TAAAIAYGLDKTGDERHIVVYDLGGGTFDVSLLSIDNGVFE-VLATAGDT 271
                 446677788889***********************999998.58999985 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.082
         DDR 264 kkvsptgni..rdidfvvlvGgsalDfEipelvtda 297
                 ++v   ++i   +i+ +vlvGgs+    +++++ + 
  KKY16662.1 363 EQVLKDAKIskSEINDIVLVGGSTRIPKVQSMIEEY 398
                 5554444441146899*******9999999998875 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0048        17       1      35 [.      53      85 ..      53     203 .. 0.78
   2 ?    4.3   0.3     0.015        55      32     101 ..     297     414 ..     241     418 .. 0.58
   3 ?    0.9   0.0      0.17     6e+02      30      60 ..     542     575 ..     527     687 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0048
                EEEEE-SSSEEEEEEETTEEEEEEEES-.-HHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
        FtsA  1 alvDiGagktdvavaedgalvhlrvigv.ggngitk 35
                +++D+G++ ++v v+++g   ++++i   +gn it 
  KKY16662.1 53 IGIDLGTTYSCVGVMQKG---KVEIIVNdQGNRITP 85
                58***************9...666664457777765 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.015
                 HHHHH..HHHHHT--HHHHHHHHHHH--S--...........................................EEEEEHHHHH......GGGGSTTHH CS
                 xxxxx..xxxxxxxxxxxxxxxxxxxxxxxx...........................................xxxxxxxxxx......xxxxxxxxx RF
        FtsA  32 gitkd..iakalrtaveeAerikikyGsala...........................................ekeigrkels......ggsalpnle 79 
                  +tkd   +  l+  ve+A+r      s+++                                           + +i+++e++      g++ +p+++
  KKY16662.1 297 DVTKDlkSMGKLKREVEKAKRTL---SSQMStrieiesfhegkdfsetltrakfeelnmdlfkktlkpveqvlkDAKISKSEINdivlvgGSTRIPKVQ 392
                 45555222223455555555555...5666667777777777777666666666666666666666666555555555555555999**999******* PP

                 HHHHHHHT-..HHHT-GGGHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
        FtsA  80 elaeralspkleevsdpeyasa 101
                  ++e+ +  k ++  +p  a+a
  KKY16662.1 393 SMIEEYFGKKASKNINPDEAVA 414
                 *****99332223555555555 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.17
                 HHHHHHH........HHHHHT--HHHHHHHHHHH--S-- CS
                 xxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxx RF
        FtsA  30 gngitkd........iakalrtaveeAerikikyGsala 60 
                 +  it+d        i++++ +a + Ae+ k     a++
  KKY16662.1 542 SITITNDkgrlsqedIERMVAEAEQYAEEDK-----AIR 575
                 4455555566544448888888888888888.....333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1135  (0.0633053); expected 358.6 (0.02)
Passed bias filter:                      626  (0.0349155); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.51
# Mc/sec: 7642.17
//
Query:       KKY16663.1  [L=661]
Description: putative c6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.4e-16   58.0   1.6    1.8e-15   56.7   1.3    1.7  2  Fungal_trans  Fungal specific transcription factor domain
      1e-08   35.1  11.8    1.8e-08   34.3  11.8    1.3  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
       0.78    9.4   4.0        1.3    8.7   4.0    1.2  1  MSSP          Male specific sperm protein


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.23   1.4e+03     187     232 ..     119     178 ..     112     184 .. 0.75
   2 !   56.7   1.3   2.9e-19   1.8e-15       1     208 [.     244     446 ..     244     502 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.23
  Fungal_trans 187 cddddlwesddaseetlvetk..............lsneeksrkiasfllaLkkilskia 232
                   +d + ++es+++++ + ++++               + e+++++ ++++++L++ ls+i 
    KKY16663.1 119 DDRNLEEESSSRNALNPLRDEvaakgdagspkqqgTNAEMSQSEGYLGESSLARWLSDIG 178
                   455556666666666666666778888888888888899999999999999999999885 PP

  == domain 2  score: 56.7 bits;  conditional E-value: 2.9e-19
  Fungal_trans   1 ldrffsnfhpqfpilhkpsflpkt....ssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfss.pssslw 92 
                   l+ + + ++p+f+++   +fl ++    s   + +     +++l++++alG+l ++ +t++s      +++e + ++lra+ l++e+++  + +s  
    KKY16663.1 244 LQEYLQTIQPLFQVVEVKQFLLEYdiffSTGVPAEEGVLWQAMLNLVFALGSLRTRYATSQS------NRAEDVEYFLRARVLSLEPLNLlQIPSRA 334
                   67899999999999999999999999877777788888888999********9999999998......33455689********666664245566* PP

  Fungal_trans  93 ilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcdd 189
                   ++q + ++++y+ +s +++ +++++g+ +r a++lg+h    +         +++e+e r+R+w +   l+ ++ + +Grp  +++  i++ LP + 
    KKY16663.1 335 HVQLTAMFAIYLTASNRINRAWLMIGTSIRYAQTLGFHLANIDDH------ISPFEKELRKRVWHSMSTLEHLLGFLTGRPLAINEPTISVGLPGSI 425
                   **************************************9999999......99999**************************88**********999 PP

  Fungal_trans 190 ddlwesddaseetlvetk..l 208
                    +  + d++s +  +      
    KKY16663.1 426 KEAMQLDSRSRSSERTLDylY 446
                   999988888887777633443 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3  11.8     3e-12   1.8e-08       1      38 [.      42      78 ..      42      80 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 3e-12
                SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCC CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfysessk 38
                haC++Crk++ KC++ +P C++C++ n++C  yses+ 
  KKY16663.1 42 HACEPCRKRRAKCNGVQPRCGRCEEINSPCF-YSESKA 78
                8*****************************9.888875 PP

>> MSSP  Male specific sperm protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.0   0.00021       1.3      11      41 ..      41      71 ..      36      79 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00021
        MSSP 11 GpccGpccGgcGpccGgcGprcGpcGgcG.pc 41
                G +c p c      c g  prcG c     pc
  KKY16663.1 41 GHACEP-CRKRRAKCNGVQPRCGRCEEINsPC 71
                667777.6666667777888888887764144 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.34s 00:00:01.02 Elapsed: 00:00:00.50
# Mc/sec: 4003.83
//
Query:       KKY16664.1  [L=284]
Description: putative short chain dehydrogenase reductase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-56  190.6   0.0    3.7e-56  190.3   0.0    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    4.5e-44  150.3   0.0    5.6e-44  149.9   0.0    1.1  1  adh_short     short chain dehydrogenase
    3.9e-09   36.7   0.0      6e-09   36.1   0.0    1.2  1  KR            KR domain
     0.0096   15.4   0.0      0.014   14.9   0.0    1.2  1  Epimerase     NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.082   12.3   0.0       0.18   11.1   0.0    1.5  2  DUF1776       Fungal family of unknown function (DUF1776)
       0.11   12.6   0.0       0.19   11.8   0.0    1.4  1  DUF4060       Protein of unknown function (DUF4060)


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.3   0.0   1.2e-59   3.7e-56       4     233 ..      46     280 ..      39     281 .. 0.94

  Alignments for each domain:
  == domain 1  score: 190.3 bits;  conditional E-value: 1.2e-59
                   TSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                   sgIGra+A ++a+eGa++ +t+l ee+  + ++++  e+ g+++  le+D  d+++++++v++ +e fgkl il++n ++ +   +++ e++ e ++
    KKY16664.1  46 SGIGRAVALLYAREGADITFTYLPEEKqdAMDTKAGIERAGRKAnlLELDLLDTDNCRKAVDKHMEAFGKLSILIHNSAMQEI-CNDLSEINLEVVE 141
                   8*************************95555666667778877556***********************************98.9************ PP

                   HHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT..HHHHHHH CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg..fdellee 191
                   ++++ n  ++f l+k+alp+m++g+ i+n+ sv++ ++ p+   y+ +K+a+  +tr+lA +l+pkgiRvN+v+pg+i T+++ + kg  ++++ + 
    KKY16664.1 142 KTFKLNNIAMFGLVKYALPHMRRGSCIINTGSVAGYMGNPQLCDYSSTKGAISTFTRALAQQLAPKGIRVNSVAPGIIWTPLQPATKGnpSSAMDSL 238
                   **********************************************************************************999988435557778 PP

                   HHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 192 learaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                      +aplgr g p eva a++fLas++ sy+tG+t++v gGl
    KKY16664.1 239 GVGEAPLGRPGMPVEVAGAYVFLASPLGSYTTGETIHVTGGL 280
                   89***************************************7 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   0.0   1.9e-47   5.6e-44       1     188 [.      37     225 ..      37     231 .. 0.93

  Alignments for each domain:
  == domain 1  score: 149.9 bits;  conditional E-value: 1.9e-47
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE..EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGC CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv..vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfsel 96 
                 k++l+tG++sGIGra+a  +a+eGa++++  + ++++++  +++ ++++g+ka  +++D+ d ++++++v+k ++ +gkl +L++N ++ +  ++ se+
  KKY16664.1  37 KAALITGGDSGIGRAVALLYAREGADITFtyLPEEKQDAMDTKAGIERAGRKANLLELDLLDTDNCRKAVDKHMEAFGKLSILIHNSAMqEICNDLSEI 135
                 789************************9954455556666777777888****************************************7788899*** PP

                 SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short  97 seeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                 + e +e+++++N  ++f l++ +lp+m   ++  I+n++Svag +++++++ Ys++K+a+  +tr+la++lap+girvn+vaPG++ T+++ 
  KKY16664.1 136 NLEVVEKTFKLNNIAMFGLVKYALPHMR--RGSCIINTGSVAGYMGNPQLCDYSSTKGAISTFTRALAQQLAPKGIRVNSVAPGIIWTPLQP 225
                 **************************87..7889******************************************************9985 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0     2e-12     6e-09       4     176 ..      40     217 ..      38     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 2e-12
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE.---------TTT-- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvih.aAgvlrdklleemt 101
                 litGG  g+G+++a   a++ga        +  +++d+ ++ a +e+ g + +++++D+ d d+ ++++++  + +++++  ih +A+    + l+e +
  KKY16664.1  40 LITGGDSGIGRAVALLYAREGADITFTYLPE--EKQDAMDTKAGIERAGRKANLLELDLLDTDNCRKAVDKHMEAFGKLSILIHnSAMQEICNDLSEIN 136
                 9********************8755544444..56777778899***************************************945777779******* PP

                 HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--TT-HHHHHH....HHHHHHHHHHHHHHHHTEEEEEE- CS
          KR 102 aedleqvlapKvkGawnLhelled..esldffvlfSSiagllgsagqanYaaa....NaflDalaeyrrsqglpavsinwg 176
                  e +e+ ++    ++  L ++  +  ++   ++ + S+ag +g+++ ++Y+++    ++f  ala++ + +g ++ s++ g
  KKY16664.1 137 LEVVEKTFKLNNIAMFGLVKYALPhmRRGSCIINTGSVAGYMGNPQLCDYSSTkgaiSTFTRALAQQLAPKGIRVNSVAPG 217
                 ********9888888777776655589999********************9763333678888888888888888888765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.5e-06     0.014       1      65 [.      39     110 ..      39     149 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.5e-06
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHHHT- CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrsalerlfkeeqp 65 
                 +l+tG+   iG+a++   +++g +++     ++++  a + ++         +l eldl+d ++++++++++ +
  KKY16664.1  39 ALITGGDSGIGRAVALLYAREGADITFTYLPEEKQD-AMDTKAgieragrkaNLLELDLLDTDNCRKAVDKH-M 110
                 59********************99777665533333.33333357999********************9974.4 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.7     5e+03     220     248 ..      13      41 ..       7      50 .. 0.74
   2 ?   11.1   0.0     6e-05      0.18     110     200 ..     134     219 ..     127     234 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.7
     DUF1776 220 vlsWsesaralygpnyvsilskaisaksi 248
                 ++ W+++ ++ y + y+     +++a  i
  KKY16664.1  13 IVFWDDEGKKPYLQEYQGRNLLKNKAALI 41 
                 56799999999999999877666666555 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 6e-05
     DUF1776 110 tiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqikLGnl 200
                 +i l+ ++++++ + ++++ +++  lp+++         i+ + s+   + +p     + + +a+s+++++L+++l+p++i v  +  G++
  KKY16664.1 134 EINLEVVEKTFKLNNIAMFGLVKYALPHMRR-----GSCIINTGSVAGYMGNPQLCDYSSTKGAISTFTRALAQQLAPKGIRVNSVAPGII 219
                 78999999****9****************96.....569999*****************************************99987776 PP

>> DUF4060  Protein of unknown function (DUF4060)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.3e-05      0.19      13      64 ..     100     153 ..      93     160 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.3e-05
     DUF4060  13 vaadaAlaaHaekyGe.grqkhp.tiYtvavrgkkvaVEVvtRresyVATvmvG 64 
                   + +A+++H+e++G+ +   h+  + ++  +   ++ EVv +       +m G
  KKY16664.1 100 DNCRKAVDKHMEAFGKlSILIHNsAMQEICNDLSEINLEVVEKTFKLNNIAMFG 153
                 5699************86666651566788888899999998877666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1946.44
//
Query:       KKY16665.1  [L=307]
Description: putative rna polymerase ii mediator complex protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-45  155.7   0.8      2e-45  155.3   0.8    1.2  1  Med7           MED7 protein
  ------ inclusion threshold ------
      0.039   12.1   0.1      0.049   11.7   0.1    1.1  1  Lant_dehydr_N  Lantibiotic dehydratase, N terminus


Domain annotation for each model (and alignments):
>> Med7  MED7 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.3   0.8   2.2e-49     2e-45       3     187 ..      14     204 ..      12     208 .. 0.92

  Alignments for each domain:
  == domain 1  score: 155.3 bits;  conditional E-value: 2.2e-49
        Med7   3 aFPpPPpfyklfteenlkklkelkeeaekeeeeeedesaae.............eqelelpkeLrvlipPeppkegeYrvFGenwsllkdklpsLeeqg 88 
                 +FP+PPpf+k+ft++n+++l+++ +++++e+e   ++++ +             ++ +++p+eL++lipP+pp+ ++Y  F e+ +l + +lp      
  KKY16665.1  14 PFPAPPPFWKHFTTDNISRLEAIIKTQATEDEGGPSKETVKskeaakrlrpselRNLKDIPQELTYLIPPPPPTGDTYDLFSETINL-SSTLP--FPPS 109
                 8********************999999988887776666657899*******99777789**************************6.99999..5667 PP

        Med7  89 ieqlyeedesedrkkeLkkLlrslllnfleLlgillknPeqsefeekvedlrllliNmhhllNeyRphQAretlillleeqleekreeiekirkkceev 187
                 i++l+  +++ ++ ++L  L++s+lln+leL+++l+  P+     ek+edlr l+iN h+l+N++RphQAre++  +lee+++e ++e+e++++   +v
  KKY16665.1 110 IPRLF--SPNPNPTPQLLHLTKSILLNYLELIETLSLSPSA--SPEKLEDLRHLFINAHYLINSLRPHQARESVVGILEEKVKEGKKEVEELERWERDV 204
                 *****..99999***************************77..89**********************************************99866665 PP

>> Lant_dehydr_N  Lantibiotic dehydratase, N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   5.4e-06     0.049     162     253 ..     134     220 ..     121     261 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.4e-06
  Lant_dehydr_N 162 tiaeLaerlaaefpeasaeeiealldeLveqglLvteLrppltgtdplghllerLeeipeaaellaelaalrdllarydaapegaaeaalee 253
                    ++ eL+e+l    p+as+e++e+l +  ++++ L+ +Lrp+   ++ +g l e++   +e ++ ++el++ ++ ++++ ++ + ++e ++++
     KKY16665.1 134 NYLELIETLSLS-PSASPEKLEDLRHLFINAHYLINSLRPHQARESVVGILEEKV---KEGKKEVEELERWERDVEGWLEERRMEGE-KFRK 220
                    566899998877.9***************************************99...999999***********999999998887.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2021.07
//
Query:       KKY16666.1  [L=607]
Description: putative sodium solute symporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-20   72.5  21.3    2.9e-20   72.5  21.3    2.0  2  SSF       Sodium:solute symporter family


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5  21.3   1.6e-24   2.9e-20      70     406 .]      17     362 ..       3     362 .. 0.78
   2 ?   -0.3   0.3     0.021   3.7e+02     335     361 ..     520     546 ..     496     592 .. 0.55

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 1.6e-24
         SSF  70 TlpdylskRfkgkrilvylsalslllvitlklsvdlvggaklielalGlnyetavlllaaltalYtviGGllAvvytdtiqavl..mlvgalilliivl 166
                 T  ++++ R+++    v++ +l  l + ++ +++ ++ g +li  + G+ + +a +l+ + ++lYt++GGl A+ +td + + +  +l+  ++l++++ 
  KKY16666.1  17 TSLEIIRMRYGKIG-HVVFIVL-NLCCNIFGCASMILTGSQLIYGISGMHFVAATFLIPLGVVLYTAVGGLKATFLTDYLHTAValILIIYFTLAVLTH 113
                 55688999999877.5555555.56677788**************************************************976225566677788888 PP

         SSF 167 levGgleslveklkeaapkv..vdlltpdslkllrdpltalslwlglvlGvagl....philvRflaak.....dakailkgvlkltivlilvligmis 254
                  ++Ggl  l ek+++ a +     ++++  + +  +p+ + sl   l  G   l        ++ +a++      +  + +  + ++++ i  ++g  +
  KKY16666.1 114 EAIGGLGGLWEKVMATASENyiEGNYKGSLITMKSEPAIIWSL--ILKCGNLALvvmdTAFWQKSFATEvdatvPGYDLAALAIFGIPWGIGTVVGLTA 210
                 8999********9987775554555555555444556555555..455566666444544556666666433333344444455566666667777788 PP

         SSF 255 iilfaiklagavpkavgtevgvsniaypeLvvkllpnllaGlllavmlAaimstltslllsassaftkDlYkkirrkasakekelvgvsriivlvvisl 353
                 + ++   ++   p+  +t+  ++ +++p  +++l+++     +    + a+ st++s +++ ss+++ DlYk  +  + a++++lv+vs i+v+v +  
  KKY16666.1 211 RAIHNTPIFPTYPAELTTAEVNAGLVMPYVIKALIGDQGIVTFFVLLFMALTSTVSSSMIAVSSILSFDLYKTYINPK-ASDRRLVYVSHIAVVVHALF 308
                 8888888888899999******************9876555566677889***********************99999.99*********999887765 PP

         SSF 354 aillavqeeqkg.vlklvelafaglasavlavillalfwkrvneqGAlagliiG 406
                   +  +  +  g  ++ + +   +l+ + +  ++l+lfw+  ++  A+++ i+G
  KKY16666.1 309 ITAFSLVLNYGGaNMTWIGYFRPILTCPGIIPLILTLFWSGQTRLAAIISPILG 362
                 555555555555667889999**********************99999998887 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.021
         SSF 335 kekelvgvsriivlvvislaillavqe 361
                 +e++  +++++i+ +vi+l+ ++++  
  KKY16666.1 520 RELRRWHRIAWIIWIVIVLVTFILWPM 546
                 455444444444444444444444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       947  (0.0528195); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4190.16
//
Query:       KKY16667.1  [L=652]
Description: putative siderophore iron [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-14   54.1  43.6    1.1e-11   44.2  20.0    2.6  3  MFS_1            Major Facilitator Superfamily
    2.5e-09   36.5   6.8    2.5e-09   36.5   6.8    2.7  3  Sugar_tr         Sugar (and other) transporter
  ------ inclusion threshold ------
      0.035   14.6   0.2       0.13   12.8   0.2    1.9  1  Phage_holin_3_2  Phage holin family 2


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2  20.0   1.9e-15   1.1e-11      10     265 ..      84     355 ..      73     407 .. 0.72
   2 !   15.1  15.6   1.3e-06     0.008      37     147 ..     413     528 ..     373     532 .. 0.75
   3 ?   -3.1   0.0      0.48   2.9e+03     213     230 ..     580     597 ..     549     609 .. 0.57

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 1.9e-15
       MFS_1  10 larsi...lgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfp 104
                  ++s+   +++a+  + + ++    s ig++  + a+  av+ ++++ + d f+r   +++ l+++++g ++++ +++   +l+v+rv+++ g++++  
  KKY16667.1  84 VSFSLdqsTTAAYDVYATAAFD-RQSYIGTIEIAEAIIVAVSKPFIAKICDVFSRQTAYIIILVSYVVG-YIIVASANTAaALCVGRVISSTGQSGFDL 180
                 3333333244555447778888.888899999999******************9999************.77774488888****************** PP

       MFS_1 105 agaaliadwfpkeergraigllsagfslGailgpllgglla.sslg..Wravfyilaivsllafv..lfllllpeepperkrkspkeee....kgtgpa 194
                 +  +++ d++p + rg+  +l s  + + + +g  + + l+  + +  Wr+ + +++i++ +++   ++ l++ +++ e++ + +   +    k     
  KKY16667.1 181 ITDIVVGDLSPLQWRGFTSALTSFPYLFLPFVGSKIQASLCtGNTNhcWRWGYGMFCIIAPVLVSpiIVTLVYADRQAEKAGELSFAASrletK----- 274
                 *****************************************44444******999999998883343666777777777777777666434442..... PP

       MFS_1 195 plvp.....awkallkdpvl.w......illialllfffgfsg..lltllplylqevlglsglllaglllallalvgailallag 265
                  +++     a +  ++ +++ +      i li+lll +++f++  l + l +    + g+s++ +++  + ++++v++il++++ 
  KKY16667.1 275 RAIEagtmqAQRGSVRERFVtFcrlldeIDLIGLLLLAMAFALilLPFSLAS--DADGGWSNASMIA--MFVCGFVILILFIVWD 355
                 4444343332222222222232334577556666666445554225555555..7777777546666..8888888888888875 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.3e-06
       MFS_1  37 lltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllll.fa...sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsag 129
                  +++ ++   ++ l++G     f r + + ++gl l +l+ l ++ +a   + ++ +l+ + +l G+g+++++ +  ++  + +p+++ ++ i+ ls+ 
  KKY16667.1 413 FVAITTVSLTFFGLLAGIYQRIFHRYKvLQIFGLSLRILA-LGITyWAvgpNASTaALVMASLLGGMGGACSVVGTRVASQASVPHQDLASIISQLSLW 510
                 4555666667777777777666777776666677776666.4444455567445559****************************************** PP

       MFS_1 130 fslGailgpllggllass 147
                 + lG+ +g ++++ ++++
  KKY16667.1 511 TKLGSSVGSAISSTMYTN 528
                 ************999865 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.48
       MFS_1 213 lialllfffgfsglltll 230
                 ++++l+ +++  ++   +
  KKY16667.1 580 FLTALCLSVIPLIFGLIM 597
                 222222222222222222 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   6.8   4.1e-13   2.5e-09      28     184 ..      82     243 ..      71     278 .. 0.88
   2 ?   -2.2   2.0      0.23   1.4e+03     384     384 ..     362     362 ..     303     402 .. 0.47
   3 !    2.4   9.7    0.0094        56      37     158 ..     391     522 ..     368     540 .. 0.69

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 4.1e-13
                 HHHTSTT--SHHHHHH...........HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHH CS
    Sugar_tr  28 faknfglsksksskee........ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGl 118
                 +a  f l++s+++ ++         ++++g i  +  ++ +++  f+ ++ d+f+R+ +++i+ v +v+g ++ a a+   +  +l+vgRv++  g  +
  KKY16667.1  82 VAVSFSLDQSTTAAYDvyataafdRQSYIGTIEIAEAIIVAVSKPFIAKICDVFSRQTAYIIILVSYVVGYIIVASAN---TAAALCVGRVISSTGQSG 177
                 556666666666666677777777888999999999999999************************************...99**************** PP

                 HHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHH CS
    Sugar_tr 119 asvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpalll 184
                 +  ++ + ++ ++p ++Rg+   l+ + + f  +v++ + + l + + +  wr+  g+ +++a +l
  KKY16667.1 178 FDLITDIVVGDLSPLQWRGFTSALTSFPYLFLPFVGSKIQASLCTGNTNHCWRWGYGMFCIIAPVL 243
                 *******************************************88888899999999877776333 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.23
                 H CS
    Sugar_tr 384 R 384
                  
  KKY16667.1 362 P 362
                 2 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.0094
                 SHHHHHH............HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHH.HHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHH CS
    Sugar_tr  37 sksskee.........ssvlsglivsiflvGaiiGslfagllgdrfGRkkslli.aavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPm 125
                 +++ +++         s+  +g +v+i+ v  ++ +l+ag+   +f R k+l i +  l + +  ++++a g n+  + +v+  l+G   G++sv+ + 
  KKY16667.1 391 RST-YYTtwvyvikpwSNYNWGNFVAITTVSLTFFGLLAGIYQRIFHRYKVLQIfGLSLRILALGITYWAVGPNASTAALVMASLLGGMGGACSVVGTR 488
                 333.2335777788889999****************************999977377788888889*****9999999999988888444555555555 PP

                 HHHTTS..-SCCHHHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 126 yisEiA..pkklRgalvslyqlaitfGilvaaifg 158
                  +s  +  +++l+  ++s   l++ +G  v++ + 
  KKY16667.1 489 VASQASvpHQDLA-SIISQLSLWTKLGSSVGSAIS 522
                 5555544333333.333334455555655555444 PP

>> Phage_holin_3_2  Phage holin family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   2.2e-05      0.13      12      72 ..     142     202 ..     137     209 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.2e-05
  Phage_holin_3_2  12 lviGalialGklLvseepitlrLfiGRvilGsavslvagvaLvqfpdlsplavvGigsalG 72 
                      ++i +  ++G ++v++ + ++ L +GRvi  ++ s    +  +++ dlspl   G++sal 
       KKY16667.1 142 IIILVSYVVGYIIVASANTAAALCVGRVISSTGQSGFDLITDIVVGDLSPLQWRGFTSALT 202
                      566677899*************************************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       937  (0.0522617); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 4308.88
//
Query:       KKY16668.1  [L=238]
Description: hypothetical protein UCRPC4_g05851 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.01   15.5   0.1      0.021   14.5   0.1    1.5  1  Raco_middle  RACo middle region


Domain annotation for each model (and alignments):
>> Raco_middle  RACo middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   1.2e-06     0.021      42      94 ..     128     178 ..     111     180 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.2e-06
  Raco_middle  42 lsRiayakeeeegleklqkavveeinelieelleeagiekeeiyevvvagNtt 94 
                  ++Ri+y+++ +++l+ lq a+ e+i+ +ie+++++agi++++i+++ ++ N++
   KKY16668.1 128 VTRIHYQST-QNELALLQPAIPEAIK-AIESAATDAGISTQTISKLQTVDNSV 178
                  79*******.999********99996.7999****************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1511.52
//
Query:       KKY16669.1  [L=258]
Description: putative secreted protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-07   30.8   0.0      3e-07   30.4   0.0    1.1  1  DUF1524   Protein of unknown function (DUF1524)


Domain annotation for each model (and alignments):
>> DUF1524  Protein of unknown function (DUF1524)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   1.6e-11     3e-07      45     137 ..     158     252 ..     127     254 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 1.6e-11
     DUF1524  45 eakkltiEHilPqslaekwegagqedeekreelvndl..gNLtlltkslN...sslsnkpfleKrdlykksslrlnrklaekdewdeeaiearqeaLa 137
                  a++ +i+H+ P + a+ + ga++++ ++r+ ++ndl    L ++t+ +N    + s ++++++ +++   + + + ++a+kd +d + + a++ aL 
  KKY16669.1 158 AASDVDIDHMIPLKNAWIS-GASKWTTTQRQAFANDLtrPQLWAVTDNVNeskGDSSPDDWKPPLSSF--YCTYAESWVAVKDYYDLTITSAEKSALS 252
                 223344***********99.*****************5557888888888777666678888888877..7**********************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.51
# Mc/sec: 1536.84
//
Query:       KKY16670.1  [L=428]
Description: putative abhydrolase domain-containing protein 12 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-12   47.5   1.1    5.8e-12   46.7   1.1    1.4  1  Abhydrolase_6  Alpha/beta hydrolase family
    3.8e-07   30.0   0.5    6.4e-07   29.3   0.5    1.3  1  Abhydrolase_1  alpha/beta hydrolase fold
      1e-06   28.2   0.0    1.4e-06   27.8   0.0    1.2  1  Hydrolase_4    Serine aminopeptidase, S33
    4.2e-06   26.8   0.0    6.7e-06   26.1   0.0    1.4  1  Abhydrolase_3  alpha/beta hydrolase fold
  ------ inclusion threshold ------
       0.03   14.1   0.0        0.5   10.1   0.1    2.3  2  Abhydrolase_2  Phospholipase/Carboxylesterase
       0.12   12.2   0.1       0.24   11.3   0.1    1.4  1  TIM21          TIM21


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   1.1     2e-15   5.8e-12       1     156 [.     125     304 ..     125     376 .. 0.63

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 2e-15
                    EEEE--.GC.....GC...HHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHHCHHHHHHHCCTT......TTSEEEEEETCHHHHHHHHHHCC.. CS
  Abhydrolase_6   1 vlllHG.agssassWl...vapLaallaagvhvlapDlpGhGrsdpppldledladlaalldelaa....gggpvvlvGHSlGGalalaaapla.. 86 
                    v+ lHG ag+ as+W+   ++ L  ++++ +hvla+D++G+G s+++p++   l d + +++  ++     + ++v++G SlG+a++  ++ +   
     KKY16670.1 125 VIYLHGtAGCLASGWRtdsYRALYSAAPDKIHVLAVDYRGYGLSTGSPTEAGLLIDAVSVVNWAINtagiPPSRIVIFGQSLGTAVGISVVQYFas 220
                    5679**6555599**634566777777777************99999999999****999999999987677777********9977775555566 PP

                    .......EE.EEES-........----TTT.......S----TTHHHHHHTT-CCCCHCCH..S-HSCCCCHHHCCCCHCHCCCGHHHHCC CS
  Abhydrolase_6  87 .....lvvg.vlldppp......talpagl.......laaalelllallallrllawlsre..plprlfladedadaawrarlarlaalla 156
                           +g vl+++ +       ++ +g+       la++++ll+ ++ ++ + +wls++  +   +f++    +++++ + + ++ +l+
     KKY16670.1 221 qpdpiSFAGiVLVASFSdvatllSTYKIGNsipvlspLARIPSLLAYFN-SFLHNTWLSKDriA---DFIR---LREDFASTTSVGPSSLD 304
                    6788744667999994444444423333332222222333333333333.33335888764330...4444...22333333333332222 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.5   2.1e-10   6.4e-07       2     108 ..     124     238 ..     123     251 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 2.1e-10
                    EEEEE-STTTCGGGGTTGHHHHHHHHT...TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHH.HH.HHHCTTSSEEEEEETHHHHHHHHHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd...gfdvillDlrGvgySspapacinddygtasvaddld.ri.ldalgddkltlvGhSmGGmialayaa 92 
                    ++++lhG +g++ + ++ +  +aL  +   + +v+++D rG+g S+ +p+   +   +++   +++ +i  +  +  ++++ G+S+G++++  + +
     KKY16670.1 124 LVIYLHGTAGCLASGWRTDSYRALYSAapdKIHVLAVDYRGYGLSTGSPT---EAGLLIDAVSVVNwAInTAGIPPSRIVIFGQSLGTAVGISVVQ 216
                    699*******77774444444444444444*******************9...5667777888888355899999999*************99999 PP

                    HH.....GGGEEEEEEESE.CS CS
  Abhydrolase_1  93 ey.....perVkalvllga.id 108
                     +     p + +++vl+++ +d
     KKY16670.1 217 YFasqpdPISFAGIVLVASfSD 238
                    999998999999*****99533 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   4.7e-10   1.4e-06      29     118 ..     152     253 ..     119     293 .. 0.66

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 4.7e-10
  Hydrolase_4  29 aqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpel..plfllGhSmGGliallyl...lrypd..kvaglilsaPalkikakl.. 117
                     ++v+a+D+rG+G s g          ++ D+ ++v+ + ++ +    +++++G+S+G ++ ++++   + +pd  ++ag++l+a++ ++++ l  
   KKY16670.1 152 PDKIHVLAVDYRGYGLSTGSPT----EAGLLIDAVSVVNWAINTAGIPpsRIVIFGQSLGTAVGISVVqyfASQPDpiSFAGIVLVASFSDVATLLst 245
                  4579*************66655....6666777777776666554444449*********999888887776666655888********999987744 PP

  Hydrolase_4 118 .......k 118
                         +
   KKY16670.1 246 ykignsiP 253
                  44443331 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.2e-09   6.7e-06       1     120 [.     125     246 ..     125     294 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 2.2e-09
                    EEEE--STTTS--TTTTHHHHHH.HHHHHTSEEEEEE--...-TTTS-TTHHH.HHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcre.lakelgavvvsvdYr...lAPehpfPaav.edalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalr 91 
                    ++y+HG + +l s    d++ +   a+  ++ v++vdYr   l+   p  a +  da+++++w+ ++   +g+ psriv++G+S G      v++ 
     KKY16670.1 125 VIYLHGTAGCLASGWRTDSYRALySAAPDKIHVLAVDYRgygLSTGSPTEAGLlIDAVSVVNWAINT---AGIPPSRIVIFGQSLGTAVGISVVQY 217
                    69****99998876433333333036667899*****998889999999997527***********9...69***********************9 PP

                    HHHTT.---EEEEEEESE-SSTSSTTSHHH CS
  Abhydrolase_3  92 ardeg.epkvagqvliyPvtdlertesesi 120
                    ++++   ++ ag+vl+    d+ +t  +++
     KKY16670.1 218 FASQPdPISFAGIVLVASFSDV-ATLLSTY 246
                    9998534459999999998877.4444555 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.095   2.8e+02      10      23 ..     118     131 ..     116     144 .. 0.86
   2 ?   10.1   0.1   0.00017       0.5      99     123 ..     191     215 ..     183     256 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.095
                    SS---EEEEEE--T CS
  Abhydrolase_2  10 kdkaqavviflHGl 23 
                    +d+++ +vi+lHG 
     KKY16670.1 118 DDPEARLVIYLHGT 131
                    689**********4 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00017
                    HTT--GGGEEEEEETHHHHHHHHHH CS
  Abhydrolase_2  99 kkgipssriiigGFSqGaalalyla 123
                    ++gip sri+i+G S G+a+++  +
     KKY16670.1 191 TAGIPPSRIVIFGQSLGTAVGISVV 215
                    579*****************98654 PP

>> TIM21  TIM21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   8.1e-05      0.24      44     105 ..     344     405 ..     328     425 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.1e-05
                 HHHHHHHHH-HHHHHHT----EEEC-ECCSSSSCCC--SEEEEEE-TTSSEEEEEEEEEE-S CS
       TIM21  44 nrAlekveedeevrevlgerlkayGeetrrdrWtRnrpivstreldkeGkehlrmkFhvegk 105
                 n  +e+  ++ee +++  e+l+++Ge  +   W+     v  +e+ ++G++  +m + v g+
  KKY16670.1 344 NATFEMPISHEEFQQIRAEKLQSFGEGGEVVEWKTKNGGVIREEIVRYGVHDRVMSWPVVGD 405
                 566777789999********************************************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2936.65
//
Query:       KKY16671.1  [L=1798]
Description: putative ankyrin repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-35  120.9   1.1    1.3e-10   41.7   0.1    7.8  7  Ank_2     Ankyrin repeats (3 copies)
    3.1e-25   88.2   7.1    4.2e-06   27.2   0.0    9.5 10  Ank_4     Ankyrin repeats (many copies)
    5.2e-24   81.7  13.6    5.1e-05   23.3   0.0   11.5 12  Ank_3     Ankyrin repeat
      2e-22   79.0   9.0      6e-07   29.6   0.2    8.5  9  Ank_5     Ankyrin repeats (many copies)
    2.2e-20   72.1   9.9    6.6e-05   23.2   0.1    6.9  8  Ank       Ankyrin repeat
  ------ inclusion threshold ------
      0.041   14.0   0.4        0.2   11.8   0.1    2.4  2  Polbeta   Polymerase beta, Nucleotidyltransferase


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.1   4.2e-14   1.3e-10       7      75 ..     510     589 ..     495     597 .. 0.80
   2 !   15.2   0.0   7.9e-06     0.024      55      79 ..     690     715 ..     677     727 .. 0.80
   3 !   18.2   0.0   9.2e-07    0.0028       1      80 [.     736     839 ..     736     842 .. 0.75
   4 ?   -2.8   0.0       3.3   9.8e+03      55      79 ..     873     897 ..     869     919 .. 0.81
   5 ?    4.2   0.0     0.021        64      41      73 ..    1080    1115 ..    1076    1125 .. 0.86
   6 !   23.1   0.1   2.9e-08   8.6e-05      30      83 .]    1488    1548 ..    1467    1548 .. 0.77
   7 !    7.3   0.0    0.0023       6.9      17      58 ..    1627    1678 ..    1608    1682 .. 0.77

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 4.2e-14
       Ank_2   7 ngnlelvklLl..egadpn..k.ngktaLhyAakngnleivklLleh.....ad.ndgrtpLhyAarsghleivklLlek 75 
                  g+ ++v++    e +d+n  + +g+t+Lh+Aa  g+ ++v+ L++h     a+  dg t+Lh+Aa+ g    v+ Ll k
  KKY16671.1 510 LGDIDFVDYWCrqEDTDINrrDhTGRTPLHLAALCGSPKMVQCLIDHgarltARlVDGLTALHIAASRGEMGSVEALLHK 589
                 45566777776656688888647***********************99776533899*********99*99******954 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 7.9e-06
       Ank_2  55 tpLhyAarsghleivklLlek.gadi 79 
                 +pLh+A+ +gh+eiv+ L+   gad+
  KKY16671.1 690 NPLHLAIMNGHTEIVEALISDfGADV 715
                 68888888888888888885467776 PP

  == domain 3  score: 18.2 bits;  conditional E-value: 9.2e-07
       Ank_2   1 LhlAakn.gnle.lvklLl.egadpn..k.ngktaLhyAakngnleivklLleh........ad......nd....grtpLhyAarsghleivklLlek 75 
                 L lAa++  n++ +++ Ll +ga ++  + ++ t+Lh+ +  +n++++kl+ +h        ++       +      +pL  ++r+ +++i+  Ll++
  KKY16671.1 736 LVLAARFaPNPDlMIHTLLdKGASCSqaDmDEITVLHHIVNDNNIKALKLMFDHngpapqnaINhitiagWEgspiVLSPLLTSIRKCNSDIALELLKR 834
                 56789964567548889999997777543789*********************888888555223333342233435689*******999*******99 PP

       Ank_2  76 gadin 80 
                 ga++ 
  KKY16671.1 835 GASPV 839
                 99886 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 3.3
       Ank_2  55 tpLhyAarsghleivklLlekgadi 79 
                  p+++A++++ + ++  Lle ga+ 
  KKY16671.1 873 QPIILAIQNDLPTVALRLLELGAEA 897
                 5788888887777777888877765 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.021
       Ank_2   41 ivklLleh...adndgrtpLhyAarsghleivklLl 73  
                  + k+L+     ++++g+  L+ Aa++g  e+vk+L 
  KKY16671.1 1080 CFKFLVPDlgdTERKGYIKLFEAAWEGDGETVKYLT 1115
                  789999977667799**99*****99999*****96 PP

  == domain 6  score: 23.1 bits;  conditional E-value: 2.9e-08
       Ank_2   30 Lh.yAakng..nleivklLleh....adndgrtpLhyAarsghleivklLlekgadinlkd 83  
                  L  +Aak++  +le++   +      ++ +  tpLh+A ++g+l ++klLl++gad++++d
  KKY16671.1 1488 LAeLAAKGQnkHLECIIEAVPStinsVNHEDLTPLHLAFQYGRLAAAKLLLKRGADPTKRD 1548
                  55467775412556655555435556778889*******************99****9987 PP

  == domain 7  score: 7.3 bits;  conditional E-value: 0.0023
       Ank_2   17 legadpn..k.ngktaLhyAakngnleivklLleh......ad.ndgrtpLh 58  
                   +gad+   + +g + Lhy ++ng + ++ + l++      ++  +g+tpL 
  KKY16671.1 1627 TNGADLQvmEgCGDFLLHYIVRNGGTRLADAVLKFdptllsFEnATGTTPLE 1678
                  3777877653799***********9999*****9777776633689****96 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.4e-09   4.2e-06       2      55 .]     501     554 ..     500     554 .. 0.92
   2 !   14.9   0.0     1e-05     0.031      16      54 ..     549     586 ..     549     587 .. 0.84
   3 !   11.5   0.0   0.00012      0.35      37      55 .]     690     708 ..     677     716 .. 0.81
   4 ?   -2.2   0.0       2.3     7e+03      11      28 ..     744     761 ..     735     764 .. 0.74
   5 !    6.4   0.0    0.0046        14       3      36 ..     769     806 ..     767     832 .. 0.73
   6 ?   -2.3   0.0       2.5   7.5e+03       8      29 ..     877     899 ..     875     921 .. 0.79
   7 ?   -0.3   0.0      0.57   1.7e+03      27      52 ..    1143    1167 ..    1135    1169 .. 0.83
   8 ?    1.5   0.1      0.16   4.7e+02       4      31 ..    1292    1319 ..    1290    1327 .. 0.86
   9 ?    0.1   0.0      0.44   1.3e+03      26      55 .]    1409    1436 ..    1404    1436 .. 0.78
  10 !   21.8   0.1   6.7e-08    0.0002       2      41 ..    1519    1557 ..    1518    1563 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.4e-09
       Ank_4   2 ltaLhyaaisgrlelvr.lLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++aL  a+  g+++ v+ ++ + + din++ +  G+t+lh Aa+ g++++++ L+
  KKY16671.1 501 TEALCEAIVLGDIDFVDyWCRQEDTDINRR-DHTGRTPLHLAALCGSPKMVQCLI 554
                 789999***********5555779******.*********************998 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1e-05
       Ank_4  16 lvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 +v+ L+++ga + a+   +G+talhiAa+rg    ++ L
  KKY16671.1 549 MVQCLIDHGARLTAR-LVDGLTALHIAASRGEMGSVEAL 586
                 67889**********.788*********99976666666 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00012
       Ank_4  37 talhiAakrgnveilklLl 55 
                 ++lh A+++g+ ei++ L+
  KKY16671.1 690 NPLHLAIMNGHTEIVEALI 708
                 6899999999999998887 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 2.3
       Ank_4  11 sgrlelvrlLlekgadin 28 
                  ++  +++ Ll+kga++ 
  KKY16671.1 744 PNPDLMIHTLLDKGASCS 761
                 5667789*******9975 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.0046
       Ank_4   3 taLhyaaisgrlelvrlLlek.gad....inaqdnrsGe 36 
                 t+Lh+ ++++++++++l +++ g+     in+   + G+
  KKY16671.1 769 TVLHHIVNDNNIKALKLMFDHnGPApqnaINHI-TIAGW 806
                 89*****************99665445667775.66666 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 2.5
       Ank_4   8 aaisgrlelvr.lLlekgadina 29 
                 +ai+++l++v+ +Lle ga+   
  KKY16671.1 877 LAIQNDLPTVAlRLLELGAEAST 899
                 68899999999899999999444 PP

  == domain 7  score: -0.3 bits;  conditional E-value: 0.57
       Ank_4   27 inaqdnrsGetalhiAakrgnveilk 52  
                  +  q +++G++++  A+ r ++  ++
  KKY16671.1 1143 VAVQ-DDRGFSPFSLALFRRHFTLAR 1167
                  5667.899***********9998776 PP

  == domain 8  score: 1.5 bits;  conditional E-value: 0.16
       Ank_4    4 aLhyaaisgrlelvrlLlekgadinaqd 31  
                  + +ya+++ +l+l+ ++l++ +d+n ++
  KKY16671.1 1292 IADYAIEADDLKLLIFILDRFQDLNIRC 1319
                  5689*******************99983 PP

  == domain 9  score: 0.1 bits;  conditional E-value: 0.44
       Ank_4   26 dinaqdnrsGetalhiAakrgnveilklLl 55  
                  + n++   s  ++l + a  g+ + +k++l
  KKY16671.1 1409 SMNKV--QSETPPLLRSAFAGHASSIKYFL 1436
                  55666..23457****************97 PP

  == domain 10  score: 21.8 bits;  conditional E-value: 6.7e-08
       Ank_4    2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhi 41  
                  lt+Lh a+++grl +++lLl +gad+ ++ ++ G++++h+
  KKY16671.1 1519 LTPLHLAFQYGRLAAAKLLLKRGADPTKR-DKKGRNLMHH 1557
                  69***************************.********96 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.7e-08   5.1e-05       2      27 ..     534     558 ..     533     562 .. 0.92
   2 !    7.2   0.0    0.0032       9.5       1      23 [.     566     588 ..     566     594 .. 0.84
   3 !   19.8   0.0   2.4e-07   0.00072       4      29 ..     690     715 ..     689     717 .. 0.95
   4 ?    1.4   0.0      0.23   6.9e+02       6      29 ..     736     760 ..     736     762 .. 0.83
   5 !    5.7   0.0    0.0096        29       3      28 ..     768     793 ..     766     795 .. 0.90
   6 ?    3.4   0.0     0.052   1.6e+02       4      29 ..     814     838 ..     813     840 .. 0.91
   7 ?   -0.7   0.0       1.2   3.5e+03       5      28 ..     874     896 ..     872     899 .. 0.85
   8 ?   -0.3   0.0      0.83   2.5e+03       2      23 ..    1150    1171 ..    1149    1176 .. 0.86
   9 ?    2.8   0.0     0.082   2.5e+02       4      31 .]    1291    1317 ..    1289    1317 .. 0.91
  10 ?   -1.4   0.0         2     6e+03       5      24 ..    1343    1362 ..    1341    1366 .. 0.84
  11 !   12.3   0.0   6.8e-05       0.2       3      29 ..    1519    1544 ..    1517    1546 .. 0.93
  12 ?   -0.3   0.0      0.89   2.6e+03       4      23 ..    1641    1660 ..    1638    1665 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.7e-08
       Ank_3   2 GetpLhlAarsgnleivkfLlenkga 27 
                 G+tpLhlAa++g++++v+ L++ +ga
  KKY16671.1 534 GRTPLHLAALCGSPKMVQCLID-HGA 558
                 9*********************.898 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0032
       Ank_3   1 nGetpLhlAarsgnleivkfLle 23 
                 +G t+Lh+Aa+ g    v++Ll 
  KKY16671.1 566 DGLTALHIAASRGEMGSVEALLH 588
                 699*********99844888875 PP

  == domain 3  score: 19.8 bits;  conditional E-value: 2.4e-07
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadv 29 
                 +pLhlA+++g++eiv++L+  +gadv
  KKY16671.1 690 NPLHLAIMNGHTEIVEALISDFGADV 715
                 69***********************8 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.23
       Ank_3   6 LhlAarsgnle..ivkfLlenkgadv 29 
                 L lAar+++ +  +++ Ll+ kga +
  KKY16671.1 736 LVLAARFAPNPdlMIHTLLD-KGASC 760
                 56899999996689******.89976 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.0096
       Ank_3   3 etpLhlAarsgnleivkfLlenkgad 28 
                  t Lh+ +  +n++ +k++++++g+ 
  KKY16671.1 768 ITVLHHIVNDNNIKALKLMFDHNGPA 793
                 699******************99876 PP

  == domain 6  score: 3.4 bits;  conditional E-value: 0.052
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadv 29 
                 +pL + +r +n +i+  Ll+ +ga +
  KKY16671.1 814 SPLLTSIRKCNSDIALELLK-RGASP 838
                 89******************.99976 PP

  == domain 7  score: -0.7 bits;  conditional E-value: 1.2
       Ank_3   5 pLhlAarsgnleivkfLlenkgad 28 
                 p+ lA+ ++ ++++  Lle  ga+
  KKY16671.1 874 PIILAIQNDLPTVALRLLE-LGAE 896
                 6678999999*********.8986 PP

  == domain 8  score: -0.3 bits;  conditional E-value: 0.83
       Ank_3    2 GetpLhlAarsgnleivkfLle 23  
                  G +p+ lA+   +++++++++e
  KKY16671.1 1150 GFSPFSLALFRRHFTLARLIFE 1171
                  889************9998887 PP

  == domain 9  score: 2.8 bits;  conditional E-value: 0.082
       Ank_3    4 tpLhlAarsgnleivkfLlenkgadvna 31  
                  t+  +A+++++l++++f+l+ +  d+n+
  KKY16671.1 1291 TIADYAIEADDLKLLIFILD-RFQDLNI 1317
                  77789***************.9***996 PP

  == domain 10  score: -1.4 bits;  conditional E-value: 2
       Ank_3    5 pLhlAarsgnleivkfLlen 24  
                  ++ lA++ g++++++ +++ 
  KKY16671.1 1343 LFDLAMLLGKTAMLDHIIKA 1362
                  6789***********99985 PP

  == domain 11  score: 12.3 bits;  conditional E-value: 6.8e-05
       Ank_3    3 etpLhlAarsgnleivkfLlenkgadv 29  
                   tpLhlA  +g+l+ +k+Ll+ +gad+
  KKY16671.1 1519 LTPLHLAFQYGRLAAAKLLLK-RGADP 1544
                  6********************.9***8 PP

  == domain 12  score: -0.3 bits;  conditional E-value: 0.89
       Ank_3    4 tpLhlAarsgnleivkfLle 23  
                   +Lh+ +r+g + ++++ l+
  KKY16671.1 1641 FLLHYIVRNGGTRLADAVLK 1660
                  589******99877777666 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.2     2e-10     6e-07       8      56 .]     526     574 ..     521     574 .. 0.95
   2 !   14.4   0.0   1.2e-05     0.037      17      42 ..     689     715 ..     682     718 .. 0.90
   3 ?    1.5   0.1      0.13   3.9e+02      20      54 ..     736     772 ..     733     793 .. 0.79
   4 ?   -0.6   0.0       0.6   1.8e+03      19      41 ..     815     837 ..     810     839 .. 0.86
   5 ?    2.7   0.0     0.058   1.7e+02      19      46 ..     874     901 ..     868     906 .. 0.85
   6 ?    0.2   0.0      0.35     1e+03       7      37 ..    1141    1174 ..    1137    1191 .. 0.75
   7 ?   -2.0   0.0       1.6   4.9e+03      18      48 ..    1291    1321 ..    1288    1324 .. 0.83
   8 !   24.7   0.0   6.8e-09     2e-05       8      54 ..    1513    1556 ..    1511    1557 .. 0.89
   9 ?   -1.9   0.0       1.6   4.6e+03       5      49 ..    1629    1670 ..    1627    1672 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 2e-10
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 d+nr+d  g tpLh+Aa +g++ +v+ L+++ga l+++  +Gltal++A
  KKY16671.1 526 DINRRDHTGRTPLHLAALCGSPKMVQCLIDHGARLTARLVDGLTALHIA 574
                 89**********************************************9 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.2e-05
       Ank_5  17 ntpLhvAakygaadvvrlLl.argadl 42 
                 ++pLh+A+ +g+ ++v+ L+ ++gad 
  KKY16671.1 689 VNPLHLAIMNGHTEIVEALIsDFGADV 715
                 59*******************999996 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.13
       Ank_5  20 LhvAak.ygaadvvrlLl.argadlnltdsrGltald 54 
                 L +Aa+ + ++d+++  l + ga++ + d +  t+l+
  KKY16671.1 736 LVLAARfAPNPDLMIHTLlDKGASCSQADMDEITVLH 772
                 7788888888888888888888888888777666664 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.6
       Ank_5  19 pLhvAakygaadvvrlLlargad 41 
                 pL +++++ ++d++++Ll+rga+
  KKY16671.1 815 PLLTSIRKCNSDIALELLKRGAS 837
                 7778888899********99986 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.058
       Ank_5  19 pLhvAakygaadvvrlLlargadlnltd 46 
                 p+++A+ +  ++v+++Ll+ ga + + +
  KKY16671.1 874 PIILAIQNDLPTVALRLLELGAEASTIN 901
                 89****************9998876655 PP

  == domain 6  score: 0.2 bits;  conditional E-value: 0.35
       Ank_5    7 advnrldgggntpLhvAakygaadvvrlLl...a 37  
                   +v  +d +g++p+ +A  +++++++rl++    
  KKY16671.1 1141 LQVAVQDDRGFSPFSLALFRRHFTLARLIFeiaI 1174
                  55667899999******99999999999985554 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 1.6
       Ank_5   18 tpLhvAakygaadvvrlLlargadlnltdsr 48  
                  t+  +A+++  + +++++l+r +dln+++ +
  KKY16671.1 1291 TIADYAIEADDLKLLIFILDRFQDLNIRCRD 1321
                  5667899999999999999999999998765 PP

  == domain 8  score: 24.7 bits;  conditional E-value: 6.8e-09
       Ank_5    8 dvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltald 54  
                  +vn++d    tpLh+A  yg++  ++lLl+rgad++ +d+ G+++++
  KKY16671.1 1513 SVNHEDL---TPLHLAFQYGRLAAAKLLLKRGADPTKRDKKGRNLMH 1556
                  5677776...********************************88775 PP

  == domain 9  score: -1.9 bits;  conditional E-value: 1.6
       Ank_5    5 gpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG 49  
                  g ad++  +g+g   Lh+ +++g  +++   l    d++l  +++
  KKY16671.1 1629 G-ADLQVMEGCGDFLLHYIVRNGGTRLADAVL--KFDPTLLSFEN 1670
                  5.677777788889999999999999999999..88888887776 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   2.2e-08   6.6e-05       2      29 ..     534     562 ..     533     563 .. 0.93
   2 !   12.0   0.0   7.5e-05      0.23       1      23 [.     566     588 ..     566     596 .. 0.79
   3 !   21.4   0.0   8.1e-08   0.00024       5      27 ..     691     715 ..     689     719 .. 0.90
   4 ?   -2.8   0.0       3.7   1.1e+04      16      28 ..     748     761 ..     738     764 .. 0.71
   5 ?   -1.8   0.1       1.8   5.3e+03       1      14 [.     766     778 ..     766     800 .. 0.59
   6 ?   -3.5   0.0         6   1.8e+04       6      22 ..    1420    1436 ..    1419    1438 .. 0.77
   7 !   15.3   0.0     7e-06     0.021       4      32 .]    1520    1549 ..    1518    1549 .. 0.90
   8 ?   -1.9   0.0       1.8   5.4e+03       2      17 ..    1639    1654 ..    1638    1663 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.2e-08
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlna 29 
                 G+TPLHlAa +g++ +++ L+ hGA l+a
  KKY16671.1 534 GRTPLHLAALCGSPKMVQCLIdHGARLTA 562
                 99*******************99**9887 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 7.5e-05
                 TSBBHHHHHHHHTTHHHHHHHHT CS
         Ank   1 dGnTPLHlAatngkkriiklLLh 23 
                 dG T+LH+Aa++g    +++LLh
  KKY16671.1 566 DGLTALHIAASRGEMGSVEALLH 588
                 8*********6666669999996 PP

  == domain 3  score: 21.4 bits;  conditional E-value: 8.1e-08
                 HHHHHHHHTTHHHHHHHH.T.TTST CS
         Ank   5 PLHlAatngkkriiklLL.h.GAnl 27 
                 PLHlA++ng+++i+++L+ + GA++
  KKY16671.1 691 PLHLAIMNGHTEIVEALIsDfGADV 715
                 9*****************8679*98 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 3.7
                 HHHHHHH.TTTSTT CS
         Ank  16 riiklLL.hGAnln 28 
                  +i+ LL +GA+  
  KKY16671.1 748 LMIHTLLdKGASCS 761
                 58999**7799764 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 1.8
                 TSBBHHHHHHHHTT CS
         Ank   1 dGnTPLHlAatngk 14 
                 d  T+LH  + n++
  KKY16671.1 766 DEITVLHHIV-NDN 778
                 678****855.443 PP

  == domain 6  score: -3.5 bits;  conditional E-value: 6
                  HHHHHHHTTHHHHHHHH CS
         Ank    6 LHlAatngkkriiklLL 22  
                  L + a  g+++ ik++L
  KKY16671.1 1420 LLRSAFAGHASSIKYFL 1436
                  55667789999***999 PP

  == domain 7  score: 15.3 bits;  conditional E-value: 7e-06
                  BHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank    4 TPLHlAatngkkriiklLL.hGAnlnaldn 32  
                  TPLHlA ++g +  +klLL +GA+++ +d+
  KKY16671.1 1520 TPLHLAFQYGRLAAAKLLLkRGADPTKRDK 1549
                  *****7799999999****88*****9995 PP

  == domain 8  score: -1.9 bits;  conditional E-value: 1.8
                  SBBHHHHHHHHTTHHH CS
         Ank    2 GnTPLHlAatngkkri 17  
                  G+  LH+ ++ng++r 
  KKY16671.1 1639 GDFLLHYIVRNGGTRL 1654
                  6778***889998665 PP

>> Polbeta  Polymerase beta, Nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.6e-05       0.2      25      65 ..     164     205 ..     161     227 .. 0.78
   2 ?   -3.4   0.0       3.5     1e+04      41      80 ..    1714    1752 ..    1711    1756 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.6e-05
                 S------EEEEEEEESS-.--HHHHHHHHHHHHHH.SSSEEE CS
     Polbeta  25 gkareeSDiDlavllkek.ldleeelelaaelediklgkkvD 65 
                 +k+ + SD+D++++  ++ + +++ l+++a+++d  l++ + 
  KKY16671.1 164 DKLAPASDVDIFIYGLNEeEAMNKILQIEAKINDNILHETTT 205
                 677899********9999899999********9995544443 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.5
                  S---HHHHHHHHHHHHHH.SSSEEEEEETTTS-HHHHHHH CS
     Polbeta   41 ekldleeelelaaelediklgkkvDlvdlneapplllyei 80  
                  ++++le  ++l +++++  ++ k +l+ l+ea+ + ++ +
  KKY16671.1 1714 SQDNLESTWRLCNNVASF-TNSKRKLISLSEANEVAKRLA 1752
                  456788889999999999.889999999998877666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1798 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.08u 0.31s 00:00:01.39 Elapsed: 00:00:00.55
# Mc/sec: 9787.91
//
Query:       KKY16672.1  [L=498]
Description: putative vacuolar protein sorting-associated protein 27 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-37  127.3   0.1    7.5e-37  126.3   0.1    1.5  1  VHS              VHS domain
    1.2e-08   34.2  11.7    0.00028   20.6   2.6    3.7  3  UIM              Ubiquitin interaction motif
    1.2e-05   25.5   1.0    3.7e-05   23.9   0.0    2.3  3  GAT              GAT domain
  ------ inclusion threshold ------
      0.025   15.4   0.2        1.6    9.6   0.3    2.8  2  Ribosomal_S30AE  Sigma 54 modulation protein / S30EA ribosoma
      0.047   13.1   0.1      0.074   12.4   0.1    1.3  1  Npa1             Ribosome 60S biogenesis N-terminal


Domain annotation for each model (and alignments):
>> VHS  VHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.3   0.1   2.1e-40   7.5e-37       3     128 ..       8     132 ..       6     137 .. 0.94

  Alignments for each domain:
  == domain 1  score: 126.3 bits;  conditional E-value: 2.1e-40
                 HHHHHHHHHHHHT-TT-SS--HHHHHHHHHHHHCSTCHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHCTTTC CS
         VHS   3 sasslekliekATdeslreedlslileicDlinekeagpkeavrlikkkinsknphvallaLklldalvkNcGskfhleiaskeflnelvklilekkns 101
                 s s+l+++ie+AT++sl  ed++  lei+D+i++k ++pk+a+r++k+++ +knp+v+l++Lkl+d++vkN+Gs+f+ eias+ef+++ v++++     
  KKY16672.1   8 STSALDEQIERATSSSL--EDIASSLEISDMIRSKTVQPKDAMRSLKRRLGNKNPNVQLSTLKLTDTCVKNGGSHFLTEIASREFMDNAVSMLKAYGGA 104
                 56789**********99..688*********************************************************************99988888 PP

                 HCS..HHHHHHHHHHHHHHHTTT-TTGH CS
         VHS 102 klak.vkkkvlelleeWadafknkpelk 128
                  l++ vk+k+lel++ Wa+a +n+p+l+
  KKY16672.1 105 ALNDdVKNKMLELIQNWATATQNRPDLR 132
                 88778********************997 PP

>> UIM  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.3     0.056     2e+02       3      16 ..      13      26 ..      13      26 .. 0.88
   2 !   20.6   2.6   7.7e-08   0.00028       3      17 .]     149     163 ..     149     163 .. 0.96
   3 !   16.0   0.1   2.4e-06    0.0084       2      17 .]     193     208 ..     192     208 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.056
         UIM  3 dedLqrAlalSlqE 16
                de+++rA   Sl++
  KKY16672.1 13 DEQIERATSSSLED 26
                9******9888886 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 7.7e-08
         UIM   3 dedLqrAlalSlqEa 17 
                 dedL+rAl++Sl+Ea
  KKY16672.1 149 DEDLKRALEMSLEEA 163
                 9*************6 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 2.4e-06
         UIM   2 EdedLqrAlalSlqEa 17 
                  d dL++A++lSl+Ea
  KKY16672.1 193 NDPDLKAAIELSLKEA 208
                 599***********95 PP

>> GAT  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.92   3.3e+03       9      41 ..      35      63 ..      24      72 .. 0.74
   2 ?   -3.1   0.0       2.9     1e+04      36      41 ..     114     119 ..     104     130 .. 0.52
   3 !   23.9   0.0     1e-08   3.7e-05       7      76 ..     258     323 ..     249     324 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.92
         GAT  9 emLsstepdeellenellkeLyetckamqpriq 41
                +m+ s    ++++ ++++  L +++ +  p++q
  KKY16672.1 35 DMIRS----KTVQPKDAMRSLKRRLGNKNPNVQ 63
                44444....345668999999999998888887 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.9
         GAT  36 mqpriq 41 
                 m + iq
  KKY16672.1 114 MLELIQ 119
                 222333 PP

  == domain 3  score: 23.9 bits;  conditional E-value: 1e-08
         GAT   7 LsemLsstepdeellenellkeLyetckamqpriqklieetadeedllaelLqlNDeLnnvlerYerlkk 76 
                 L e L++ +p+ ++l +  ++eLye++ +++p++ + ++e   ++d   +lL l+ +L++v++ Y+r+++
  KKY16672.1 258 LVERLQHQPPG-TILREPQIQELYESIGKLRPKLARTLGEAMSKSD---TLLDLHAKLSSVVRYYDRMLE 323
                 44555555677.999*************************877775...******************986 PP

>> Ribosomal_S30AE  Sigma 54 modulation protein / S30EA ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.3   0.00044       1.6      56      85 ..     190     219 ..     174     220 .. 0.82
   2 ?    2.4   0.0     0.077   2.8e+02      49      80 ..     266     296 ..     247     301 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00044
                      EEEEESSHHHHHHHHHHHHHHHHHHCHHTT CS
  Ribosomal_S30AE  56 aeeesedlyaaidlavdklerqlrkykekl 85 
                       ee+++dl aai+l ++ +e+q +k+ e l
       KKY16672.1 190 DEENDPDLKAAIELSLKEAEEQKKKHAESL 219
                      38899*********************9976 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.077
                      CTTEEEEEEEEESSHHHHHHHHHHHHHHHHHH CS
  Ribosomal_S30AE  49 akgkviraeeesedlyaaidlavdklerqlrk 80 
                      ++g+++r e + ++ly++i ++  kl r l  
       KKY16672.1 266 PPGTILR-EPQIQELYESIGKLRPKLARTLGE 296
                      3788899.56679***************9865 PP

>> Npa1  Ribosome 60S biogenesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   2.1e-05     0.074      50      99 ..      40      90 ..      11     134 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.1e-05
        Npa1 50 riLqk..hlkllyrnlssskeslisptLrLlteivsfdggalarevlrsfdf 99
                + +q+   +++l+r l ++++++++ tL+L  ++v+ +gg++    + s++f
  KKY16672.1 40 KTVQPkdAMRSLKRRLGNKNPNVQLSTLKLTDTCVK-NGGSHFLTEIASREF 90
                45566678****************************.999987665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       956  (0.0533214); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 3143.29
//
Query:       KKY16673.1  [L=1053]
Description: putative ubiquitin c-terminal [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-53  180.9   0.0    4.6e-53  180.3   0.0    1.3  1  UCH         Ubiquitin carboxyl-terminal hydrolase
    7.3e-17   61.9   2.8    2.2e-13   50.5   0.3    2.2  2  UCH_1       Ubiquitin carboxyl-terminal hydrolase
     0.0011   19.4   0.0     0.0026   18.3   0.0    1.7  1  Rhodanese   Rhodanese-like domain


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.3   0.0   7.7e-57   4.6e-53       1     257 []     683    1047 ..     683    1047 .. 0.94

  Alignments for each domain:
  == domain 1  score: 180.3 bits;  conditional E-value: 7.7e-57
                  -EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHHSH-CCEE--HHHHHHHHHHSGGGTSSST CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH    1 tGlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkellkskskavsPkklkktlsklaksfsgykq 97  
                  tGl+N+G tCymns+lQcL+++ +l++++l+       +r+k+ l ++n +g++g +   +++++++l++   +a++P+++++++++++++ ++ +q
  KKY16673.1  683 TGLVNFGVTCYMNSTLQCLSATIPLSQFFLE-------DRYKQFL-QKNWKGSSGIMPGLYTNVVRSLWNGDVEAIKPTTFRTFCGRMNREWAIDRQ 771 
                  7******************************.......8888776.4777888889*************9999************************ PP

                  CEHHHHHHHHHHHHHHHHCC........................HCCCHHHHHHCCCTTSHHHHHH-EEEEE......................... CS
                  xxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxxx......................... RF
         UCH   98 qDaqEflaflLdqlhedlnr........................evaeekwkkhlkrndslitdlfegqlks......................... 145 
                  qDa+Ef  fl+d lhedln                           +  +w++ + r  s+i++lf gq  s                         
  KKY16673.1  772 QDAKEFYDFLVDCLHEDLNInwnrtvlkpltpaeelqrertqvsVASGYEWQRFQHRDYSFISSLFAGQHASrlrcttcqntsttyeafysisveip 868 
                  *******************9*********************9986677789********************************************** PP

                  .........................................EEEEEEB-SEEEEEEESEEETEE..EEE--SEEB--S.EEE-GGGBSS-BTTS-TC CS
                  .........................................xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
         UCH  146 .........................................klklkrlPeiLiihlkRfsynss..ksKlntkvefpe.eldlssylaeekkkktee 198 
                                                           ++ l+r+P++L+ih+kRfs +++   +K++t++efp+ +l++++++ ++  ++t+ 
  KKY16673.1  869 hqagsgadiysclrsytqeemlsgeevwkcphckcereatkQIILTRMPQFLVIHFKRFSASKTesARKIHTPIEFPLhNLSMDPFMIQHPPPPTPA 965 
                  *************************************************************888899**********87*****9999888888776 PP

                  S-B................EEEEEEEEEES.CTTSEEEEEEEECTTTTEEEEEETTEEEEE-HH.....CCCTT.CEEEEEE CS
                  xxx................xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxx.xxxxxxx RF
         UCH  199 kkk................YeLiavvvHsG.slssGHYvayiknekngkWykydDetvkevkee.....eevls.sayiLfY 257 
                  + +                Y+ ++v+ H G +lssGHY++++k++ ++ W+kydDe+    +       + +++ +ayiLfY
  KKY16673.1  966 QDQmketvapdqattppysYDCYGVLRHLGnTLSSGHYISLVKDQGRNCWRKYDDERTVDFDPMrlhgrDRLQNgEAYILFY 1047
                  6668899999999999999************************998889*********9999556666555555******** PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   2.6e-05      0.16       2      31 ..     684     713 ..     683     723 .. 0.89
   2 !   50.5   0.3   3.6e-17   2.2e-13     105     314 ..     777    1017 ..     744    1023 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.6e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   2 GLEnhivnsYlNslLQvlyfipplrnlals 31 
                 GL n  v++Y+Ns LQ+l  + pl+++ l+
  KKY16673.1 684 GLVNFGVTCYMNSTLQCLSATIPLSQFFLE 713
                 999999*******************99886 PP

  == domain 2  score: 50.5 bits;  conditional E-value: 3.6e-17
                  xxxxxxxxxxxxxxxxxxxx..............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
       UCH_1  105 fnrflldqlekelketkkns..............................seeesaieqllgtkaettirclkCgseksrksstlvldlkyP.kpsn 170 
                  f  fl+d+l+++l+ + +++                              +++ s i++l++ +  +++rc++C+++++  + ++++++  P +   
  KKY16673.1  777 FYDFLVDCLHEDLNINWNRTvlkpltpaeelqrertqvsvasgyewqrfqHRDYSFISSLFAGQHASRLRCTTCQNTSTTYEAFYSISVEIPhQA-- 871 
                  66777777777766655444777777777777777899***********99999***********************************998443.. PP

                  xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......... RF
       UCH_1  171 ekkeakvtfasilkssler...ekttrawCekCkryqpteqrktvknlPpvLalnakleeeeelelwktknwlpleiklsldedknl.......... 254 
                      +  ++ s+l+s  ++     ++   C++Ck     +++  ++++P++L+++ k++++++ e  ++   + + i+  l++ ++           
  KKY16673.1  872 ---GSGADIYSCLRSYTQEemlSGEEVWKCPHCKCEREATKQIILTRMPQFLVIHFKRFSASKTESARK---IHTPIEFPLHNLSMDpfmiqhpppp 962 
                  ...334567777777777622223444559999999999999999*************96653333333...3333333223322223356678888 PP

                  ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  255 ...eeklkeerekakaekeikvYeLqsvvvhigdskesghLvslvkvaekelerdppesqWyl 314 
                     +++ ke+ ++++a++  + Y+  +v  h g++ +sgh++slvk        d+  + W +
  KKY16673.1  963 tpaQDQMKETVAPDQATTPPYSYDCYGVLRHLGNTLSSGHYISLVK--------DQGRNCWRK 1017
                  899888888888999******************9999********9........233345555 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   4.4e-07    0.0026       2     105 ..     354     486 ..     353     488 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 4.4e-07
   Rhodanese   2 akelkellekgkvallDvRppeeYekghI.pgAvnv.......skdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaa...aallk.. 87 
                 a+ l+  + k +v l+D+Rp+e ++ ghI   ++         +  ++ + +++   + e+ +el + ++++ + vv y+++ ++++++    +  k  
  KKY16673.1 354 AETLVGYIRKYNVLLVDIRPREVFDSGHIfSKSIMCiepltlkEGVSAEDLEERLVVSPEQEQELFS-KRNEFDLVVYYDQNTSSTRFLigpPTSSKtp 451
                 67788888999999***************95555554776644444444444444444444444444.6899999999999988877776652222255 PP

   Rhodanese  88 ..................klGyknvsvldGGfkawk 105
                                   + G     +l GG++aw 
  KKY16673.1 452 elraiydtlyefneykplRDG-RPPALLSGGIDAWV 486
                 677777777666654433366.66888888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1053 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.55
# Mc/sec: 5751.05
//
Query:       KKY16689.1  [L=970]
Description: putative hydantoinase oxoprolinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.5e-114  380.4   0.0   1.5e-113  379.2   0.0    1.6  1  DUF917          Protein of unknown function (DUF917)
    3.8e-30  104.9   4.0      1e-25   90.5   0.0    3.4  3  Hydant_A_N      Hydantoinase/oxoprolinase N-terminal region
    1.1e-26   93.8  10.0    4.8e-24   85.1   1.5    3.3  3  Hydantoinase_A  Hydantoinase/oxoprolinase
    3.4e-05   22.6   6.0      0.027   13.1   1.5    2.3  2  MutL            MutL protein
     0.0066   16.0   0.2      0.019   14.4   0.2    1.8  1  ROK             ROK family
     0.0079   15.7   1.2     0.0079   15.7   1.2    2.8  3  BcrAD_BadFG     BadF/BadG/BcrA/BcrD ATPase family
  ------ inclusion threshold ------
      0.017   15.6   0.6        5.4    7.5   0.1    3.2  2  FtsA            Cell division protein FtsA
       0.44    9.7   2.0        6.8    5.8   0.2    2.4  2  StbA            StbA protein


Domain annotation for each model (and alignments):
>> DUF917  Protein of unknown function (DUF917)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  379.2   0.0  6.6e-117  1.5e-113       2     343 ..     575     939 ..     574     946 .. 0.93

  Alignments for each domain:
  == domain 1  score: 379.2 bits;  conditional E-value: 6.6e-117
                 GHHHHHHHHHHTTTT-SS-HHHHHHH.HTT-SBTT-.-EEEE-GGG--SEE..EEEEEEE-HHHHTT-SS-HH....HHHHHHHHHT--.EEEEE-SSS CS
      DUF917   2 dlealatGaavLGtGGGGspysgyll.lrqaleegk.svrvvsldelpddalvvvvgamGsptvieeklpsgdelleavealekllgrk.idavislEi 97 
                 dle+++ G +vLGtGGGGs y +yl  l+++l++ + ++rv+s+++l+d++++v+++++G+p+v+ e+lp+g+e++++++   kl   k ++a+i++Ei
  KKY16689.1 575 DLEFISVGVGVLGTGGGGSSYLTYLNsLKHLLDSAPgTMRVISPSSLKDSDVCVFGSWYGAPSVSGERLPAGTEIMTSIDYSVKLSPYKeFHATIAVEI 673
                 9***********************97256666666779**********************************************997777********* PP

                 SCCHHHHHHHHHHHHT-EEESB-SSSS--SSGGGSHHHHTT----SEEEE-SSS-EEEEEE.---HHHHHHHHHHCTTTTTEEEEEEEEE-HHHHHH-- CS
      DUF917  98 GGlNglvallaaaklglpvvDaDgmGRAfPelqqttfavagisltPlaladekgnvvllkkaqsdkavErllRaalvemgsfagvaaypmtgaelkraa 196
                 GG+Ngl+++ ++a +++pv+D+D+mGRA+P+++++t++++g +++P++lad++gnv ++ +a+s+ ++E++lR+++ve+g +a+ aa p+tg+ +k+++
  KKY16689.1 674 GGGNGLSTFPTSAYYNIPVIDGDLMGRAYPTMEHVTPYLYGEPALPCVLADGRGNVGVVMQAESNSRIETMLRTTCVELGIQAASAAIPLTGDVIKKYV 772
                 *****************************************************************99******************************** PP

                 SBSHHHHHHHHHHHHHTT--...-SHHHHHHHHHH-EEEEEEEEE--------------EEEET...............EEEEEEESSSEEEEE..... CS
      DUF917 197 vpgtlslalriGravaeareak.dvveailealgggakvlfkGkivdverrteggfdvgevtiegldede........grelkiefqNEnllae...ed 283
                 vp+t+s+++ +Gra++ ar+ak d++e+il+++ g  k++f+Gki+dv+r+++ g+++g+v ie  ++++         r++ i+fqNE+l+a      
  KKY16689.1 773 VPNTVSQSWYLGRAIHLARRAKvDLIESILAVTPG--KLIFSGKIIDVRRDVSCGYTMGSVLIEPEESENtgregradARNMIIPFQNEYLYAAlvnS- 868
                 *******************9856***********5..66************************977776689999**99**************96550. PP

                 ET...........-SEETTSEEEEEHHB-SSSSB-TTTT.TS-EEEEEE---GGGS...SHHHH-S-....- CS
      DUF917 284 ge...........vlatvPDlIsvldaetgepigteelryGlrVtVlalpasekwr.teeglelvgPkaFGy 343
                  +           +++tvPDlIs+l + +ge+ig+++lryGl+V Vlalpa+++w+ t++gl+++gP  F +
  KKY16689.1 869 -RhiqtdmsteeeIVTTVPDLISILSSANGEAIGSQDLRYGLKVKVLALPAHPLWTdTPKGLAIGGPDFFKL 939
                 .144555556666*********************************************************87 PP

>> Hydant_A_N  Hydantoinase/oxoprolinase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.0   4.5e-29     1e-25       1     173 [.       3     179 ..       3     183 .. 0.88
   2 !    9.8   0.3   0.00027       0.6       2      19 ..     290     307 ..     289     326 .. 0.85
   3 ?    4.1   0.1     0.015        33       9      64 ..     375     434 ..     370     476 .. 0.76

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 4.5e-29
  Hydant_A_N   1 rigIDvGGTfTDavaldeke......eevavlKllstpdavaegirealeevleesiprtskidvvrmGTTvatNallerkg...ervaLittkg.frd 89 
                 rig+DvGGT+TDa +ld         +++a+ K+++t ++v++gi++a+e vl++s  +t+k+ +v +GTT+++Na++e +    +rva++   g f  
  KKY16689.1   3 RIGVDVGGTNTDAAILDVLAasqpsrGVLASSKTPTT-RDVTSGIKTAVEAVLKKSEVDTDKVLSVAIGTTHFVNAVVEADPgrlSRVAVVRLCGpFTR 100
                 79*************99666888999***********.*****************************************98778899999999984555 PP

  Hydant_A_N  90 lleigrqnrpdlfelrikkplvlyeevvevderveadgevlkpldeeevrealkalkaagvesiavvllhSylnpe..hElrvaei 173
                 ++    +  p+          +++ +++ +d+++e+dg+++++ld ++v+  +++++a+g++ ia v ++S+l  +  hE+r + +
  KKY16689.1 101 MIPPFAD-FPQS------LRNIIQGPTYYLDGGLEIDGREIRQLDLAQVKVMISEIRAKGINTIALVGIFSPLDHQglHEERCKAL 179
                 5555544.4444......357889999*********************************************98765578777765 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00027
  Hydant_A_N   2 igIDvGGTfTDavaldek 19 
                 + +D+GGT TD++al + 
  KKY16689.1 290 VIVDIGGTTTDVCALMPS 307
                 78************9765 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.015
  Hydant_A_N   9 TfTDavaldekeeevavlKllstpdavaegirealeevleesipr....tskidvvrmGT 64 
                 T TD+v+ ++++e+  ++ + s+p+++++  r  ++++lee i++       + +v++G+
  KKY16689.1 375 TATDIVVASGHQEVGDKFFVESVPKEIVSKARLKIKKMLEEVIEDmkvsSLPVVAVMCGG 434
                 89*********9999999999997777776555555555555543333277777777775 PP

>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.012        27      82      97 ..       4      19 ..       2      70 .. 0.88
   2 !   85.1   1.5   2.1e-27   4.8e-24       1     173 [.     203     384 ..     203     394 .. 0.89
   3 !    9.7   0.2   0.00021      0.47     206     262 ..     388     445 ..     382     460 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.012
  Hydantoinase_A 82 ItfDmGGTstDvslik 97
                    I++D+GGT tD++ ++
      KKY16689.1  4 IGVDVGGTNTDAAILD 19
                    99*********99875 PP

  == domain 2  score: 85.1 bits;  conditional E-value: 2.1e-27
  Hydantoinase_A   1 rtetavvnAylspilreylesvekslekrgakarlmvmqsdGglvsadearkkpvetilSGPaaGvvgaaat......sklagekkvItfDmGGT 89 
                     r +++++nA +  + +++++ + +++ek + ++ l++ q dG l++a++a + p++t +SGP  + +ga+ +      +    +k+ + +D+GGT
      KKY16689.1 203 RENATILNASILALAKKTVRAFVTAIEKLQLSCILYLTQNDGTLTDAETAVQFPIKTFASGPTNSMTGAVFLasldvaGSSLVDKQTVIVDIGGT 297
                     7899**********************************************************9888888766221222334456899******** PP

  Hydantoinase_A  90 stDvslikdgevevsletei..agvkvrlpaldirtvgagGgsil.vvdeggklrvgpesagadpgpacyrkGgteltvTDanlvLG 173
                     +tDv+++    + ++  t i  +gv++ + + ++ ++g+gGgs +   d++g+++vgp+s+g++    +   Gg+ lt TD+ +  G
      KKY16689.1 298 TTDVCALMPSGFPRQAPTFIevGGVRTAFSMPEVLSIGLGGGSQVkCEDNNGQVSVGPDSVGYQLPQKALVFGGNVLTATDIVVASG 384
                     ****999877776776665455***********************************************************999876 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00021
  Hydantoinase_A 206 lnlk..veevAegilsvavenmanavrklsvergldpkeltlvvfGGaGaqhaaalaee 262
                     +++k  ve v ++i+s+a  ++++ +++++++ ++    ++ v+ GG Ga +a+++  e
      KKY16689.1 388 VGDKffVESVPKEIVSKARLKIKKMLEEVIEDMKVSSLPVVAVMCGGVGAAIAKVVG-E 445
                     455566999********************************************9995.3 PP

>> MutL  MutL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   1.5   1.2e-05     0.027       4      67 ..       6      66 ..       4      81 .. 0.80
   2 !   11.4   0.2   3.9e-05     0.088     233     264 ..     269     304 ..     249     322 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.2e-05
        MutL  4 iDiGSttTkvtlvdlekvd...erllgqaeapTtveeedvleGleealeeleeklgktevdevlatS 67
                +D+G t T ++++d+ + +     +l+++++pTt    dv+ G+++a+e++ +k +  + d+vl  S
  KKY16689.1  6 VDVGGTNTDAAILDVLAASqpsRGVLASSKTPTTR---DVTSGIKTAVEAVLKKSE-VDTDKVL--S 66
                8*************977557877889999999998...8************99944.4444444..3 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 3.9e-05
        MutL 233 kavellae...eeekglg.dllvvDvGGaTTdvhsv 264
                 +++ +la    + ++ ++ ++++vD+GG+TTdv + 
  KKY16689.1 269 TGAVFLASldvAGSSLVDkQTVIVDIGGTTTDVCAL 304
                 444444443322223233389************987 PP

>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   8.6e-06     0.019       2      69 ..       4      76 ..       3      85 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.6e-06
                EEEEE-SSEEEEEEEETTS-EEEEEEE....EE.HCCHHCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEE CS
         ROK  2 igidiGgtkialalvdeegeilarekv....et.ptetteetlvdaiaelvdeaerkadeliavgigspGlis 69
                ig+d+Ggt++ +a++d       ++ v    +t +t ++  ++  a+++++++ e  +d++ +v+ig + +++
  KKY16689.1  4 IGVDVGGTNTDAAILDVLAASQPSRGVlassKTpTTRDVTSGIKTAVEAVLKKSEVDTDKVLSVAIGTTHFVN 76
                8************99954443333333444433044578899**************************99985 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.2   3.5e-06    0.0079       1      72 [.       4      74 ..       4      92 .. 0.87
   2 ?    2.3   0.7     0.045     1e+02       3      78 ..     292     441 ..     290     472 .. 0.62
   3 ?   -3.7   0.0         3   6.6e+03      37      61 ..     734     758 ..     720     800 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.5e-06
                 EEEEE-SSEEEEEEEETTTE.EEEEEEE--TTS-HHH.........HHHHHHHHHHT--GGGECEE..EEEST CS
  BcrAD_BadFG  1 vGiDgGsTttkavlmdekge.vlgrgitnsanlesvrfeaaekvleealtealerageeeadieetylvgtgy 72
                 +G+D+G+T t a+++d        rg+  s+++  +r  ++ + +++a++++l++++ + +++ ++++++t +
   KKY16689.1  4 IGVDVGGTNTDAAILDVLAAsQPSRGVLASSKTPTTR--DVTSGIKTAVEAVLKKSEVDTDKVLSVAIGTTHF 74
                 7***************655546789***999999776..9**********************99999998866 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.045
                  EEE-SSEEEEEEEE.............TTTEEEEEEEE--.......................................................... CS
  BcrAD_BadFG   3 iDgGsTttkavlmd.............ekgevlgrgitns.......................................................... 29 
                  +D+G+Ttt ++ +                          +                                                          
   KKY16689.1 292 VDIGGTTTDVCALMpsgfprqaptfieV-----------Ggvrtafsmpevlsiglgggsqvkcednngqvsvgpdsvgyqlpqkalvfggnvltatd 378
                  7888888876555424444433322220...........12222333445555555555777777777777777777777777777777777777777 PP

                  ................TTS-HHH.........HHHHHHHHHHT--GGGECEE..EEESTTCCCTC CS
  BcrAD_BadFG  30 ................anlesvrfeaaekvleealtealerageeeadieetylvgtgyGratlp 78 
                                  +++ ++ + +a+  +++ l+e++e ++ +   ++  ++   g+G a ++
   KKY16689.1 379 ivvasghqevgdkffvESVPKEIVSKARLKIKKMLEEVIEDMKVSSLPVV--AVMCGGVGAAIAK 441
                  77777777777777776677777778888899999999998888854444..4455555554444 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 3
                  .........HHHHHHHHHHT--GGG CS
  BcrAD_BadFG  37 feaaekvleealtealerageeead 61 
                  +++  + +e+ l++ + ++g ++a+
   KKY16689.1 734 QAESNSRIETMLRTTCVELGIQAAS 758
                  4455566666666666666666665 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0024       5.4       1      47 [.       4      52 ..       4     152 .. 0.81
   2 ?    4.9   0.1     0.016        35       1      16 [.     290     305 ..     290     340 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0024
                EEEEE-SSSEEEEEEETTEEEE..EEEES--HHHHHHHHHHHHT--HHH CS
                xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedgalvh..lrvigvggngitkdiakalrtavee 47
                ++vD+G++ td+a+++  a  +    v+       t+d+  +++tave+
  KKY16689.1  4 IGVDVGGTNTDAAILDVLAASQpsRGVLASSKTPTTRDVTSGIKTAVEA 52
                58**************944444653333334455566666666666654 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.016
                 EEEEE-SSSEEEEEEE CS
                 xxxxxxxxxxxxxxxx RF
        FtsA   1 alvDiGagktdvavae 16 
                 ++vDiG+++tdv  + 
  KKY16689.1 290 VIVDIGGTTTDVCALM 305
                 68*********97665 PP

>> StbA  StbA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2    0.0031       6.8     163     180 ..     287     304 ..     268     308 .. 0.82
   2 ?    2.7   0.1     0.026        59     178     287 ..     329     441 ..     313     475 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0031
        StbA 163 eslLiiDlGGttLDvakv 180
                  + +i+D+GGtt Dv  +
  KKY16689.1 287 KQTVIVDIGGTTTDVCAL 304
                 4678**********9876 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.026
        StbA 178 akvrg.klegiskvkgdskiG.vslitdavkealetakt..rtssfladeliknrkdeeyLkrrindedkresvlevinekvkkLkerviravsefsgy 272
                  +v +  l g s+vk+ ++ G vs+  d+v  +l ++ +   ++  +a +++ +   +e+  +  +++  +e v+++  + +k L+e vi+ + ++s  
  KKY16689.1 329 PEVLSiGLGGGSQVKCEDNNGqVSVGPDSVGYQLPQKALvfGGNVLTATDIVVASGHQEVGDKFFVESVPKEIVSKARLKIKKMLEE-VIEDM-KVSSL 425
                 555542477889999999998678888999999988554115677889999999999999998888888888888776655555555.55554.34455 PP

        StbA 273 th..vmvvGGGaeliae 287
                 +   vm+ G Ga + a+
  KKY16689.1 426 PVvaVMCGGVGAAI-AK 441
                 54116665556654.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (970 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.54
# Mc/sec: 5417.42
//
Query:       KKY16787.1  [L=304]
Description: hypothetical protein UCRPC4_g05838 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.42   10.4   5.0        4.4    7.0   5.0    2.3  1  DUF3328   Domain of unknown function (DUF3328)


Domain annotation for each model (and alignments):
>> DUF3328  Domain of unknown function (DUF3328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.0   0.00024       4.4       9     173 ..      94     256 ..      86     258 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00024
     DUF3328   9 awrrllllvlllllllllllilssllsssekkaak......kkspsspspaldaieyelkqfk......lgskeapsiyrgepspevdaaW.ddllkle 94 
                  w r+l+++l l+l++++++ +  l++++    +k         +s++  +    +y            + ++e+ + +  +  p +d +W  ++   +
  KKY16787.1  94 GWLRCLIILLQLALICVAIWGAIDLVQRLTVLLRKpngapcYCGTSVAEAESLGCKYVEM--AagwlppHCRDEQIEYEFAHLGPNADGTWnYYSDPNR 190
                 566666666666666666666666666666666554444332222222222222222222..1334442222222222233344567777733333445 PP

     DUF3328  95 ailipreelrrlgkdpaaelevedkseggyiaglevfHqLHCLnllrkalypeyygypglsegeeeedrvHleHCidiL 173
                   l++ +e++rlg +p           +  +++   +H  HCL+  rk l++    +p+l  ++  +   H+ HC  ++
  KKY16787.1 191 TQLMTYDEVARLGDQP-----------KTLYYTSWEWHIVHCLSYWRK-LHRAQS-RPNLVIEPRYNTDSHILHCSRMI 256
                 5566666677777666...........456666666999****88776.556666.799999999999*******9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2098.69
//
Query:       KKY16788.1  [L=121]
Description: hypothetical protein UCRPC4_g05839 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0044   17.2   0.0        1.1    9.5   0.0    2.8  3  UvrB_inter  UvrB interaction domain


Domain annotation for each model (and alignments):
>> UvrB_inter  UvrB interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0028        51      46      73 ..      37      63 ..      32      67 .. 0.81
   2 !    9.5   0.0   6.1e-05       1.1      34      73 ..      45      93 ..      41      98 .. 0.81
   3 !    3.9   0.0    0.0033        59      45      70 ..      96     120 ..      91     121 .] 0.85

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0028
  UvrB_inter 46 pasaeevairieffgdeiesireidplt 73
                p+   ++a+ +   gde+e ++e++  +
  KKY16788.1 37 PPG-PKTAVTVRTRGDEVEAMNEFEKRE 63
                666.4789999999******99998765 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 6.1e-05
  UvrB_inter 34 tFrvrGdtvei..........fpasaeevairieffgdeiesireidplt 73
                t r rGd ve           +p+   ++a+ +   gde+++++e+   +
  KKY16788.1 45 TVRTRGDEVEAmnefekredaIPPG-PKTAVTVRTRGDEVDKLQEFAKRE 93
                6678888888877777777778888.699****************98765 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.0033
  UvrB_inter  45 fpasaeevairieffgdeiesireid 70 
                 +p+   ++a+ +   g+e+e+++e+d
  KKY16788.1  96 IPPG-PKTAVTVRTRGEEVETLEEFD 120
                 5666.58899999***********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 877.02
//
Query:       KKY16789.1  [L=303]
Description: putative c6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00053   18.9   0.7    0.00082   18.3   0.7    1.3  1  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.7   4.6e-08   0.00082       2      58 ..     187     245 ..     186     257 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 4.6e-08
  Fungal_trans_2   2 lldyyldnvapllspvpes..snpfrkvllplalsnkallhallalsafhlqskgpkds 58 
                     ll +y d+v+ +++ +++    +  +  ++ ++++++ l+ha lals++h++ +++ ++
      KKY16789.1 187 LLAHYMDKVFSWQFQFSSLhqPDFSQGHIMWFITQSRTLYHATLALSSTHRSLQNNLKG 245
                     899********888888876566678899999*******************77766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2229.78
//
Query:       KKY16790.1  [L=481]
Description: putative sucrose transport [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.51
# Mc/sec: 2847.38
//
Query:       KKY16796.1  [L=339]
Description: putativediketo-5-methylthio-1-phosphopentane phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-21   75.9   0.1    7.4e-21   75.4   0.1    1.2  1  HAD              haloacid dehalogenase-like hydrolase
    0.00014   21.3   0.0    0.00087   18.8   0.0    1.9  1  Put_Phosphatase  Putative Phosphatase
  ------ inclusion threshold ------
       0.04   14.2   0.2       0.16   12.3   0.0    2.0  2  Hydrolase        haloacid dehalogenase-like hydrolase
      0.091   12.3   0.1       0.26   10.8   0.0    1.9  2  UMPH-1           Pyrimidine 5'-nucleotidase (UMPH-1)


Domain annotation for each model (and alignments):
>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.1   1.6e-24   7.4e-21       2     188 .]      38     222 ..      37     222 .. 0.80

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 1.6e-24
         HAD   2 lfDfDgTLldgdslelllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpklldpgalellaahraa 100
                 ++DfDgT++ +d++++l++   ++     +++ r  l ++l     ++ +++++e+ ++l+ +l+ ++++ +e +     ++  +dp+++++++ +  +
  KKY16796.1  38 FSDFDGTIFMQDTGHALFD-NFGC-----GTERRKILAQQL-----ESGERSFKEVSDELYDSLDVPFEDCFEVMK----TTLDIDPDFRTFHEFCVNN 121
                 89*****************.8888.....566666666666.....555558999999999999999988888888....333388********666** PP

         HAD 101 GdrvvvvSgglrplvepll.aelg.....adevlatelevdd.....rltgelglegkpvrgegkvaalre...wlaaegegidleevvayGDspsDlp 185
                  +++ v+S+gl+p+++++l  + g     +++++a++ e        ++ + ++++++   g++k+++++e    +  e+e+ +++ +v++GD++sDl+
  KKY16796.1 122 AIPFNVISAGLKPVLRRVLdHFIGedmsaHIDIVANDAEITTtnessKWQAVWRHPET-ELGHDKAKSINEfkaSARLESEDGTIPMIVFIGDGVSDLA 219
                 *******************55888***999999***5555445488888888666555.5666********6655666666666666************ PP

         HAD 186 llr 188
                 ++r
  KKY16796.1 220 AAR 222
                 *97 PP

>> Put_Phosphatase  Putative Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.9e-07   0.00087       4     210 ..      38     243 ..      35     256 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.9e-07
  Put_Phosphatase   4 vfDFDktiidedsdnwvvdelpatelfeelr.etlrkglwnelmdrvlkelheqg.vseadikkvlr.siplspglvelikslakkkleldlii 94 
                        DFD ti  +d+ +++ d  +  ++ +++  ++l+ +  ++  ++v  el ++  v  +d  +v++ ++ ++p +    +++   ++ +   +
       KKY16796.1  38 FSDFDGTIFMQDTGHALFDNFGCGTERRKILaQQLE-SG-ERSFKEVSDELYDSLdVPFEDCFEVMKtTLDIDPDFRTFHEFC--VNNAIPFNV 127
                      459*****************9976666665505555.43.4556778888877754888888887762689*****9999999..556789999 PP

  Put_Phosphatase  95 iSDaNsffieeileaagledlFse..iftNPaavda.sGeltvlpyhehsCklcpsNlCKgkvleelvaeq..aregveyerliYvGDganDlC 183
                      iS   +  +  +l++   ed+ ++  i +N a++   + + + ++   h  +       K k ++e++a++    e+ +   ++++GDg  Dl 
       KKY16796.1 128 ISAGLKPVLRRVLDHFIGEDMSAHidIVANDAEITTtNESSKWQAVWRHPETELG--HDKAKSINEFKASArlESEDGTIPMIVFIGDGVSDLA 219
                      ***************9998887764589999998772334455555555533333..34777889999887432333468899*********97 PP

  Put_Phosphatase 184 pvlklrekDvampRkgfpleklisenk 210
                      +    re+Dv ++R+g  le+   e+k
       KKY16796.1 220 A---AREADVLFARRGLRLEEYCIEHK 243
                      6...589***********999887765 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.41   1.8e+03       4      16 ..      37      49 ..      36      88 .. 0.68
   2 ?   12.3   0.0   3.5e-05      0.16     187     210 .]     193     225 ..     120     225 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.41
                EEEESBTTTBCHH CS
                xxxxxxxxxxxxx RF
   Hydrolase  4 vvfDkdGTLttge 16
                ++ D+dGT+    
  KKY16796.1 37 CFSDFDGTIFMQD 49
                5679999998333 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.5e-05
                 T.........STGGGEEEEESSHHHHHHHHHTT CS
                 x.........xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 187 q.........gkpeevamVGDgvnDaaalaaAg 210
                 +         g +  ++++GDgv D+aa+++A+
  KKY16796.1 193 KasarlesedGTIPMIVFIGDGVSDLAAAREAD 225
                 3333333445666679***************98 PP

>> UMPH-1  Pyrimidine 5'-nucleotidase (UMPH-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.46   2.1e+03     175     196 ..      28      49 ..      22      54 .. 0.87
   2 ?   10.8   0.0   5.8e-05      0.26      94     140 ..     110     158 ..      83     222 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.46
      UMPH-1 175 qlkkrtnvillGDslGDlsmad 196
                  +++r ++i + D  G ++m+d
  KKY16796.1  28 SMHTRRKIICFSDFDGTIFMQD 49 
                 6899************999987 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 5.8e-05
      UMPH-1  94 gveelfekleklnvPvlifsaGlgdvleevlrqa..nvvysnvkvvsnf 140
                 +++++ e   ++++P+ + saGl  vl  vl +   + +   + +v+n 
  KKY16796.1 110 DFRTFHEFCVNNAIPFNVISAGLKPVLRRVLDHFigEDMSAHIDIVAND 158
                 56778888899*********************9887899999***9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2330.25
//
Query:       KKY16797.1  [L=161]
Description: putative rna polymerase ii mediator complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-29  100.9   0.2    4.1e-29  100.4   0.2    1.2  1  Med31     SOH1


Domain annotation for each model (and alignments):
>> Med31  SOH1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   0.2   2.3e-33   4.1e-29       2      88 ..      17     127 ..      16     135 .. 0.92

  Alignments for each domain:
  == domain 1  score: 100.4 bits;  conditional E-value: 2.3e-33
                 HHHHHHHHHHHHHCSHHHHHHTTSSSS.......................SSSTHHHHHHHGG.GGGSTTCCCTT--CHH.HHHHHHHHSSTTCCCCTC CS
       Med31   2 krFeleleFvqsLanpaYlshLaqeky.......................ledeafiaYLkYL.eywkepeYakfltyPq.cLkaLellqeeefrkelk 75 
                 +rF++eleFv +Lanp+YlshLa++ +                       + +++f+aY+kYL +ywk+peY +flt+P+ +L+aLellq+e+frke++
  KKY16797.1  17 PRFTIELEFVLALANPYYLSHLAVT-FphllsepasassvtkrknagtqdTPAQKFAAYVKYLhTYWKDPEYCRFLTHPGaTLRALELLQQEKFRKEII 114
                 7***********************9.7799******************999999*********9****************9****************** PP

                 TCHHHHHHHHHHH CS
       Med31  76 kpevvealekqql 88 
                  p+v+e l  +++
  KKY16797.1 115 MPSVIEGLLMSHQ 127
                 ****997654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1228.42
//
Query:       KKY16798.1  [L=403]
Description: putative protein pal1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-42  144.1   5.2    5.7e-40  137.3   5.2    2.6  1  Pal1      Pal1 cell morphology protein


Domain annotation for each model (and alignments):
>> Pal1  Pal1 cell morphology protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.3   5.2   3.2e-44   5.7e-40       1     138 []      90     239 ..      90     239 .. 0.87

  Alignments for each domain:
  == domain 1  score: 137.3 bits;  conditional E-value: 3.2e-44
        Pal1   1 DtiDkLDvtglf.ggl...............fHHdGPfDAvtphrNkn.skaaPvlAfpkdgannslggagklnkksaldevfGredeeddkdlaklsa 82 
                 D+iDkLDvt++f +g                fHHdGPfDA++p+rNk+  ++aP++Afpkd+ n+++gg+g++nk++++++++G    e ++d   +s+
  KKY16798.1  90 DVIDKLDVTSIFgTGGkldigfdmfpltsevFHHDGPFDACNPNRNKKgLRTAPMAAFPKDSSNMAIGGSGPVNKDIDHAQFHGYG-VEGYND---YST 184
                 99**********75433566666666666779****************99**********************************85.999999...444 PP

        Pal1  83 kakkkessetkaakksskevtafdsktkaelvhGeetaGLGssTFldGapasraai 138
                 ++++ ++ e    ++ +++ +af +++k+e+vhG+e++GLG+sTFl+Gapasraai
  KKY16798.1 185 SKQE-SNFEPPGRSRGDERAAAFIPTMKVEPVHGDESVGLGTSTFLEGAPASRAAI 239
                 4443.445567788889999*********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.51
# Mc/sec: 2377.86
//
Query:       KKY16799.1  [L=298]
Description: hypothetical protein UCRPC4_g05756 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 1946.97
//
Query:       KKY16800.1  [L=558]
Description: putative aspartyl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-70  236.3   0.1      6e-70  235.8   0.1    1.2  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    1.1e-07   31.7   0.1    3.6e-07   30.1   0.1    1.9  2  tRNA_anti-codon  OB-fold nucleic acid binding domain
  ------ inclusion threshold ------
        4.8    6.8  17.3         11    5.7  15.0    2.2  2  GARP             Glutamic acid/alanine-rich protein of Trypan


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.8   0.1     1e-73     6e-70       3     313 ..     225     552 ..     223     553 .. 0.90

  Alignments for each domain:
  == domain 1  score: 235.8 bits;  conditional E-value: 1e-73
                  CHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE....-E-S-SHHHHHHHHHCTHSEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   3 elrlknryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeff....aLtqspqlylellivagidrvfq 96 
                  ++rl+nr+ldl+te  +++l + s v  ++ +y  + g  +i+tP L  ++te+g++ F v      +++f    +L+qspq+y+++li++  + vf+
   KKY16800.1 225 KTRLDNRVLDLQTECNQAILTISSAVEGLFEEYCRKGGLRKINTPKLLGAATEGGSEVFEV------SNYFgkkaYLAQSPQFYKQMLIAGDAEGVFE 316
                  689**********************************************************......355556667********************** PP

                  EEEEE--S--BTTB-S-CEEEEEEEEET-SCHH.HHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTS....EE-SSS.-EEEEHHHHHHHHHTS..... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxx.xxxxxxxxxxxxxxxx..... RF
  tRNA-synt_2  97 iaraFRaEdsrtdrhlaEFtqieaemsfieeed.imqvleelikslvkevlessakdiefvirrns....kdlkkp.fkrltykeaieklnei..... 183
                  i+++FRaE+s+t rhl+EFt +++e+ f+ + + +++++e++i ++v+e+ ++ +++i  v+++       ++k+    rl+y + ++ l+e      
   KKY16800.1 317 IGPVFRAENSNTHRHLTEFTGLDFELVFVHHYHeVLSFAENMIVYIVTELQSRYNDEIAIVQKQYPragdFKIKDGkALRLKYFDGVNLLKEAgvdvs 414
                  *****************************98877****************99999999988888767766333333477**********999855555 PP

                  .....-SS--HHHHHHHHH..............HS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHCCH CS
                  .....xxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 184 .....gkdldkaderalvk..............keknepvfvtdfPaelkpFyarkeeddkkltesyDllingvElvgGslRiedpeeleeklkskgl 262
                       + d                         k +++++ + +fP +++pFy++++ ++k l++syD++++g E+++G++R +d  el + +++kg+
   KKY16800.1 415 eqeamTTD----------LstamekqlgkiiraKYDTDFYVLDEFPMSVRPFYTKRHPENKDLSNSYDFFMRGEEIMSGAQRNNDATELANEMRAKGV 502
                  55555444..........1455555555599989**************************************************************** PP

                  HSSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 263 deeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                  +   +e f +y++a+++G+ ph+G glGl+R+v+++lg++++r++++FP+ 
   KKY16800.1 503 E-PDQEGFADYVNAFKQGCRPHAGGGLGLNRIVQFFLGLDNVRQATPFPRD 552
                  *.99*********************************************95 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.1     6e-11   3.6e-07       1      76 []     100     187 ..     100     187 .. 0.93
   2 ?   -2.1   0.0      0.65   3.9e+03      46      67 ..     354     375 ..     344     380 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 6e-11
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET......HHHHHHHTTS-TTSEEEEEEEEEEC........TTSSEEEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfr......eeatklaenlkeGdvvrvtGrvkrr........pggelelkveeiell 76 
                      V+v  rv++ +  +++k++f+ lr    +iq+v+        +++ k+a  + +++v+rvtG vk+           g lel+v++i ++
       KKY16800.1 100 VNVFVRVHNSR-SQSAKLAFLMLRQQGKTIQAVVAAtgesvsKQMVKWAVGININSVIRVTGLVKKPdppvasasISG-LELHVKKIYMI 187
                      78999*****8.999****************************************************88777777777.*******9875 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.65
                      S-TTSEEEEEEEEEECTTSSEE CS
  tRNA_anti-codon  46 lkeGdvvrvtGrvkrrpggele 67 
                      + e+++v++  ++++r++ e+ 
       KKY16800.1 354 FAENMIVYIVTELQSRYNDEIA 375
                      568999***9999999998765 PP

>> GARP  Glutamic acid/alanine-rich protein of Trypanosoma
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  15.0    0.0018        11      41     115 ..      20      94 ..       7     105 .. 0.75
   2 ?    1.5   0.1     0.035   2.1e+02      77     157 ..     111     191 ..      89     203 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0018
        GARP  41 rseeaverAesaaendteakelvkrakeaaaeateAaeaAetaasevegeaanlkavaeeylesldksLkslaes 115
                  +  a e A s++  ++ +ke+ k ak+aaa+a eA ++A+ a+s+ +   +n   +++++  +    Lk+l e+
  KKY16800.1  20 PATPAGENAPSKNALKKAQKEAEKAAKKAAAKAKEAEQRAAQAVSSEDTAKDNYGVLPQTQDIPEVVHLKNLTEE 94 
                 555566777777777677888889999999999999999999999999999999998888887777778877773 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.035
        GARP  77 aeaAetaasevegeaanlkavaeeylesldksLkslaesansdedvreaAkkCtetaenVTseSLeealealakl.tdedna 157
                 ++ A++a   ++++ + ++av+++  es++k + + a   n ++ +r +    ++++  V s+S++    +++k  + +++a
  KKY16800.1 111 SQSAKLAFLMLRQQGKTIQAVVAATGESVSKQMVKWAVGININSVIR-VTGLVKKPDPPVASASISGLELHVKKIyMIAEAA 191
                 56789999999999999999999999999999999999999888555.6667788888888888888888888873334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1652  (0.0921412); expected 358.6 (0.02)
Passed bias filter:                      858  (0.0478554); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.51
# Mc/sec: 3291.88
//
Query:       KKY16801.1  [L=411]
Description: hypothetical protein UCRPC4_g05758 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-09   38.5   0.0    7.8e-08   32.3   0.0    2.2  2  SIP1      Survival motor neuron (SMN) interacting protein 1 (
  ------ inclusion threshold ------
       0.11   11.6   0.0        4.9    6.2   0.0    2.3  2  BCSC_C    Cellulose synthase operon protein C C-terminus (BCS


Domain annotation for each model (and alignments):
>> SIP1  Survival motor neuron (SMN) interacting protein 1 (SIP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   8.7e-12   7.8e-08      12     184 ..      67     258 ..      58     268 .. 0.67
   2 !    4.1   0.0    0.0037        34     196     218 ..     373     395 ..     359     396 .. 0.80

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 8.7e-12
        SIP1  12 gpPedgeeYLrrVryEakrcpdVvva.kidpskla.kkqtvympsipeia...kcp.....esllPtkeWeqeqladFselRqklsalreelqkkekkq 100
                 gp++dg+eYLr Vr Ea+++p+  va ++ ++++a +++  y+ ++  ia   ++p      ++  ++e+ ++ l   + +R +l+        ++   
  KKY16801.1  67 GPASDGLEYLRMVRSEARSVPRLLVAsDFAKNTQAeASSGGYFDDDAYIAtslPTPdrpvaVEADAQEEYHRSLLLRLEVIRTTLKCTPPLHAISAL-P 164
                 899***********************888887777566667777777776433111333335555599****************9943333333333.2 PP

        SIP1 101 .....kiklpkikdeekwkefclgegnePllsillsldqvtveslleyliewle.....eeeelskelaqWlyallavlekP..LdadtcsalRsl 184
                      +   ++ k +  wk+++l    eP++ +l+++d  +  +++  l ++l      +  +  ++ ++W+++ l +      L+++ ++ lR+l
  KKY16801.1 165 psrpiSCPPESKKARATWKRLMLTT--EPSMVQLACMDMDSTLRVIGFLGDILPrvlthRDVNQIRNVGAWVWGCLGRCRDVgqLTSEDVAELREL 258
                 46743434444444445******88..9***********999999988877777333222222223356666666665554333555555555555 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0037
        SIP1 196 seedeelamlnllitiigryFgQ 218
                 + + ++ a l+++iti+g+ +gQ
  KKY16801.1 373 NADTQRRAILDMIITIVGEKYGQ 395
                 445566788************** PP

>> BCSC_C  Cellulose synthase operon protein C C-terminus (BCSC_C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0    0.0051        46     203     234 ..      90     120 ..      73     124 .. 0.80
   2 ?    6.2   0.0   0.00054       4.9      88     130 ..     350     392 ..     279     410 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.0051
      BCSC_C 203 lsymdydknlsyftyGqGGYfSPqrYvsvslp 234
                 l + d++kn +      GGYf  + Y++ slp
  KKY16801.1  90 LVASDFAKNTQAEA-SSGGYFDDDAYIATSLP 120
                 56678888888775.68*************99 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.00054
      BCSC_C  88 lGfdvsnvvGgvkwspklgdlgltltaeRravtdSlLSYaGar 130
                  G+d ++++G  k++++++d+  +++ +Rra+ d ++  +G +
  KKY16801.1 350 DGQDDRSIIGNTKVANDAEDIPSNADTQRRAILDMIITIVGEK 392
                 59999*********************************99754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 2633.82
//
Query:       KKY16802.1  [L=520]
Description: hypothetical protein UCRPC4_g05759 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        7.8    7.3  16.7         16    6.3  16.7    1.4  1  GRP       Glycine rich protein family


Domain annotation for each model (and alignments):
>> GRP  Glycine rich protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  16.7    0.0009        16      30      81 ..      92     156 ..      83     163 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0009
         GRP  30 keeksekeeevkdekyggggkh.............ggGgygggggggngGGGykgggGgyggggg 81 
                 +++++ek+e+  d  +g + +h              ++g+g+gg +  gGGG+ +ggGg  ggg 
  KKY16802.1  92 RKKQKEKQETKGDSGEGPSESHpkypegdeptgepSQSGNGDGGDHPPGGGGGGDGGGGPPGGGT 156
                 22333333333333333334447888888899999889999999998888888888888888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       855  (0.0476881); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.50
# Mc/sec: 3102.29
//
Query:       KKY16803.1  [L=339]
Description: putative ste50-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0001   22.8   0.1    0.00028   21.4   0.0    1.8  2  RA        Ras association (RalGDS/AF-6) domain


Domain annotation for each model (and alignments):
>> RA  Ras association (RalGDS/AF-6) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.72   1.3e+04      69      77 ..     139     147 ..     128     160 .. 0.65
   2 !   21.4   0.0   1.6e-08   0.00028      33      90 ..     260     316 ..     251     319 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.72
                 BCHHHHCCC CS
          RA  69 cplqiqlqw 77 
                  plq+++ w
  KKY16803.1 139 EPLQLLKRW 147
                 355555555 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 1.6e-08
                 HHHHHHHCT-.GGGGCCEEEECCCTTTTEEEEE-TTSBCHHHHCCC-TTTSTCEEEEEE CS
          RA  33 iealLekfgl.edspedyvLveskerggeerkLdddecplqiqlqwkkreeslrFvLre 90 
                 +  +L+  gl  +s + ++L   +++gg+ r+L+ +++p+ ++ q++  + + +FvLr+
  KKY16803.1 260 LTSVLQNIGLhRESNSLFEL--FVTYGGQSRVLKSNDKPHLVFDQLQEFGLQPQFVLRR 316
                 67899*****99********..8**********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2282.62
//
Query:       KKY16804.1  [L=379]
Description: hypothetical protein UCRPC4_g05761 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.054   13.3   0.1        0.1   12.3   0.1    1.4  1  GlutR_N   Glutamyl-tRNAGlu reductase, N-terminal domain


Domain annotation for each model (and alignments):
>> GlutR_N  Glutamyl-tRNAGlu reductase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   5.8e-06       0.1      92     141 ..     312     361 ..     304     366 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.8e-06
     GlutR_N  92 rVasGLdSlvlGEdqIlgQvkeayelakeagtlgkvLerlfqkaikvakr 141
                 ++  +L+ +++ E+qI+g +++ ++  ++a +++kvL+  ++++ ++  r
  KKY16804.1 312 EIIVSLEGMIMKERQIIGNLESIINNTNTAIATTKVLKASLHESNEITLR 361
                 67789*********************************999988766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.51
# Mc/sec: 2243.58
//
Query:       KKY16805.1  [L=595]
Description: hypothetical protein UCRPC4_g05762 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-05   22.9   0.0     0.0001   21.9   0.0    1.4  1  DUF676         Putative serine esterase (DUF676)
    0.00022   21.9   0.0    0.00035   21.2   0.0    1.5  1  Abhydrolase_6  Alpha/beta hydrolase family
    0.00026   20.8   0.1     0.0012   18.6   0.1    2.0  1  PGAP1          PGAP1-like protein
     0.0014   18.5   0.0     0.0031   17.4   0.0    1.6  1  Lipase_3       Lipase (class 3)
     0.0016   17.8   0.0     0.0036   16.6   0.0    1.5  1  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.016   15.3   2.6      0.024   14.8   0.0    2.2  2  Thioesterase   Thioesterase domain
      0.017   14.7   0.0      0.034   13.7   0.0    1.4  1  DUF2974        Protein of unknown function (DUF2974)
      0.033   14.1   0.0       0.11   12.4   0.0    1.9  1  UPF0227        Uncharacterised protein family (UPF0227)
      0.048   13.5   0.0        0.1   12.4   0.0    1.6  1  Abhydrolase_3  alpha/beta hydrolase fold
       0.07   12.8   0.0       0.24   11.0   0.0    1.9  2  Abhydrolase_1  alpha/beta hydrolase fold
       0.12   12.0   0.0        0.3   10.7   0.0    1.6  1  Esterase       Putative esterase
       0.15   11.9   0.0        0.4   10.4   0.0    1.7  1  Abhydrolase_5  Alpha/beta hydrolase family
       0.59   10.5  19.9        1.1    9.6  19.9    1.3  1  OmpH           Outer membrane protein (OmpH-like)
       0.63    9.2  14.4          1    8.5  14.4    1.3  1  DUF1682        Protein of unknown function (DUF1682)
        1.6    7.2  12.6        2.3    6.6  12.6    1.1  1  Macoilin       Macoilin family
        1.7    9.2  16.6       0.71   10.4  13.1    2.0  2  Striatin       Striatin family
        2.1    8.3   4.3       0.65   10.0   0.4    2.2  2  TPR_10         Tetratricopeptide repeat
        7.5    5.8   7.9         12    5.2   7.9    1.2  1  DUF4407        Domain of unknown function (DUF4407)
        7.9    5.3   8.1         12    4.7   8.1    1.2  1  XRN_M          Xrn1 helical domain
        9.9    4.8   9.2         16    4.2   9.2    1.2  1  Presenilin     Presenilin


Domain annotation for each model (and alignments):
>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.1e-07    0.0001       7     129 ..      19     135 ..      15     147 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.1e-07
      DUF676   7 LvVlvHGlqgnsaDlelikeqlekikeklpeekieflmsennesktfkgidvlgerlaeevlevvkkkkdknkkiSfvghSlGgli.araaiaklkeke 104
                 L++ vHG+ gn++ +++  ++++++ +    e  ++ ++   + ++   i++ ++   ++++ + +++ d    i + ghS+Gg+  a +a+ ++++++
  KKY16805.1  19 LIIYVHGFMGNETSFKSFPAHVHNLLTITLAETHVVHSKIYPRYRSRRHIEFARDEFSNWLCPHENDNTD----IILAGHSMGGILaAEVALLYPYSAT 113
                 89*********************99776778888888999999999***************987665555....569*******761568999999776 PP

      DUF676 105 mt..lkeaikglepvtfitlasPhLGv 129
                     ++      ++   +++ +P+LG+
  KKY16805.1 114 SNeaFR-----HRILGVLAFDTPFLGM 135
                 532322.....37778899******97 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     4e-07   0.00035      41     109 ..      64     137 ..      20     283 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 4e-07
                    GGCS--HHHCHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC.................EE.EEES-..----TTTS---- CS
  Abhydrolase_6  41 dpppldledladlaalldelaagggpvvlvGHSlGGalalaaapla...............lvvg.vlldppptalpagllaaal 109
                    ++++ ++++ +++++ l    ++  +++l GHS+GG+la++   +a               ++ g ++ d+       ++l + +
     KKY16805.1  64 SRRHIEFAR-DEFSNWLCPHENDNTDIILAGHSMGGILAAE---VAllypysatsneafrhRILGvLAFDT-------PFLGMHP 137
                    444455555.5556666666668999***************...665557889999885443333333333.......3322222 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   1.4e-06    0.0012      86     112 ..      82     108 ..      17     134 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.4e-06
       PGAP1  86 sekeptsviliGHSmGGivaraaltlk 112
                 +e+++t++il GHSmGGi+a  ++ l 
  KKY16805.1  82 HENDNTDIILAGHSMGGILAAEVALLY 108
                 7899***************97766554 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.5e-06    0.0031      35     108 ..      54     134 ..      26     137 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.5e-06
                 EEHHHHHHHH.S-HHHHHHHHHHHHHHHTT..-EEEEEEEETHHHHHH....HHHHHHHHHTT-SS---EEEEEES----B CS
    Lipase_3  35 vhsgfleaye.eslreqvlkelkrllekyp..eysivvtGHSLGgalA....lLaaldlvengenekkkvtvvtfGqPrvg 108
                 vhs ++  y+ +   e  ++e++++l  ++  ++ i+++GHS+Gg lA    lL ++   +n+  +++ ++v++f +P  g
  KKY16805.1  54 VHSKIYPRYRsRRHIEFARDEFSNWLCPHEndNTDIILAGHSMGGILAaevaLLYPYSATSNEAFRHRILGVLAFDTPFLG 134
                 555555555543344445666666554444338***********9875222267888888888888999999999999876 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     4e-06    0.0036      72     100 ..      83     111 ..      73     118 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4e-06
  Hydrolase_4  72 ehpelplfllGhSmGGliallyllrypdk 100
                  e+ ++ ++l GhSmGG++a++++l yp +
   KKY16805.1  83 ENDNTDIILAGHSMGGILAAEVALLYPYS 111
                  667889******************99985 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.6e-05     0.024      59      85 ..      79     106 ..      20     112 .. 0.72
   2 ?   -1.3   1.4       2.1   1.9e+03     149     183 ..     430     476 ..     416     509 .. 0.45

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.6e-05
                   HHHH-SSS.SEEEEEETHHHHHHHHHHH CS
  Thioesterase  59 lrqiqpeg.PyalfGhSlGgllAfevAr 85 
                   l ++  +     l+GhS+Gg+lA evA 
    KKY16805.1  79 LCPHENDNtDIILAGHSMGGILAAEVAL 106
                   555555555889**************96 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.1
                   HHHHHHHHHHTCCS-TTSCSE............HHCEEEEEEGSS-C CS
  Thioesterase 149 palradyraleqyslrpeaaq............klratlfngsddkl 183
                   +a++++++al++ ++ +++               ++ ++   +++k+
    KKY16805.1 430 KAVKEYEKALKSREKAEQKLSkasekekmknekAAAKAVAKAEKAKK 476
                   34444444444443222222211112223333211112222222222 PP

>> DUF2974  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.8e-05     0.034      82     123 ..      85     132 ..      70     151 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.8e-05
     DUF2974  82 segkiylgGhSkGGnlAvyaamn......aeddlqeriskiysfDgpG 123
                  + +i+l+GhS GG lA+ +a+        +++ ++ri  ++ fD p 
  KKY16805.1  85 DNTDIILAGHSMGGILAAEVALLypysatSNEAFRHRILGVLAFDTPF 132
                 3446************9877654110001455667**********994 PP

>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00013      0.11       2      80 ..      20     108 ..      19     114 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00013
     UPF0227   2 llYlHGFdS...SPlshka...qllsqfiaedvlaie..lsvlklkedpqqalkeleklvaelgddn..illvGssLGGyyatrlgerf 80 
                 ++Y+HGF     S +s+ a   +ll   +ae ++ ++  ++  + + + + a  e  + +  + +dn  i+l G s+GG +a+ ++ ++
  KKY16805.1  20 IIYVHGFMGnetSFKSFPAhvhNLLTITLAETHVVHSkiYPRYRSRRHIEFARDEFSNWLCPHENDNtdIILAGHSMGGILAAEVALLY 108
                 8******65222444433322157778888888887722445566778899999******99999998999************998877 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00011       0.1      67      92 ..      83     108 ..      36     233 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
                    TETTCEEEEEEETHHHHHHHHHHHHH CS
  Abhydrolase_3  67 gadpsrivlaGdSaGGnlaaavalra 92 
                    + d++ i+laG S GG laa val  
     KKY16805.1  83 ENDNTDIILAGHSMGGILAAEVALLY 108
                    468999*****************765 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00027      0.24      72      95 ..      86     109 ..      66     116 .. 0.91
   2 ?   -3.8   0.0       8.5   7.7e+03     211     233 ..     208     230 ..     178     236 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00027
                    TSSEEEEEETHHHHHHHHHHHHHG CS
  Abhydrolase_1  72 ddkltlvGhSmGGmialayaaeyp 95 
                    +  ++l GhSmGG +a+++a++yp
     KKY16805.1  86 NTDIILAGHSMGGILAAEVALLYP 109
                    5678999***************98 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 8.5
                    HSEEEEEEETTCSSSCHHHHHHH CS
  Abhydrolase_1 211 laptlvisgtsDplvppkaledl 233
                     +p+++i+  sD+l++   ++++
     KKY16805.1 208 EKPAYFIYKHSDGLTKATKQYFM 230
                    33777888888888877666665 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00034       0.3      92     137 ..      65     109 ..      55     114 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00034
                 CCHCHHHHTHHHHHHHHHCSEECCCEEEEEETHHHHHHHHHHHCST CS
    Esterase  92 eayetfltqeLlplldanfrtapdgravaGqSmGGlgALilalkhp 137
                 ++  +f ++e   +l  + + ++d   +aG+SmGG  A  +al +p
  KKY16805.1  65 RRHIEFARDEFSNWLCPHENDNTD-IILAGHSMGGILAAEVALLYP 109
                 455689999999************.*************99999887 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00044       0.4      53      75 ..      83     105 ..      70     114 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00044
  Abhydrolase_5  53 apklekfvvgGhslGGvvasrfa 75 
                     ++  + +++Ghs+GG++a+++a
     KKY16805.1  83 ENDNTDIILAGHSMGGILAAEVA 105
                    46667899************998 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  19.9    0.0012       1.1      10      96 ..     414     499 ..     412     503 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
                 HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqellkpild 96 
                 ++++s++ k+a+++ +k  k+++++l+++ek+ qkl ++ +k+++k+ +++++++++k e++ +++++ +++e +k+q+ +  +i+d
  KKY16805.1 414 LYSTSDALKTARNDHKKAVKEYEKALKSREKAEQKLSKASEKEKMKN-EKAAAKAVAKAEKAKKKEAATEQKERMKRQATINPEIYD 499
                 68999************************************988886.777777788888888887777779999999887777776 PP

>> DUF1682  Protein of unknown function (DUF1682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  14.4    0.0012         1     259     312 ..     435     486 ..     388     492 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0012
     DUF1682 259 lkklkktReevekklkkeaeeekaEeaqekkeeekkkereeklaklspeeqrKy 312
                  +k+ k Re++e+kl k++e+ek +  +++ ++  k+e+++  +k+ + eq+  
  KKY16805.1 435 YEKALKSREKAEQKLSKASEKEKMKNEKAAAKAVAKAEKAK--KKEAATEQKER 486
                 36788888888888888888777644443333333333333..23333333333 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  12.6    0.0026       2.3     456     526 ..     420     488 ..     405     508 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0026
    Macoilin 456 elvsakqkdkqtlqqlekrLkeekearaslekqLaeekkrkkeeeetaaravalaaasr.secteslkskkr 526
                  l  a+   k+++++ ek Lk+ ++a ++l k    e k k ++e+ aa+ava+a  ++ +e +   k++ +
  KKY16805.1 420 ALKTARNDHKKAVKEYEKALKSREKAEQKLSKAS--E-KEKMKNEKAAAKAVAKAEKAKkKEAATEQKERMK 488
                 567789999***********98777766666543..3.3344556789999999987775666655554432 PP

>> Striatin  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       2.2     2e+03      40      82 ..     260     303 ..     249     392 .. 0.51
   2 ?   10.4  13.1    0.0008      0.71      43     115 ..     420     492 ..     412     535 .. 0.56

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 2.2
    Striatin  40 errgaenlkkdlvrrikmLEyalkqe.rakylklkegtsaaken 82 
                 e +g++  + + +rr++   y      rak  k  +g  + +++
  KKY16805.1 260 ELKGQRDSNGKKLRRVRFVNYYSASTgRAKPPKIARGDPTIPSQ 303
                 56666666666667776666654433255544432222222222 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0008
    Striatin  43 gaenlkkdlvrrikmLEyalkqerakylklkegtsaakenkkkekeeeeaeeeekseeeskskekksakeslk 115
                 + + +++d+++ +k +E+alk +++  +kl ++++++k +++k+  +  a++e+++++e+ +++k+ +k +++
  KKY16805.1 420 ALKTARNDHKKAVKEYEKALKSREKAEQKLSKASEKEKMKNEKAAAKAVAKAEKAKKKEAATEQKERMKRQAT 492
                 5678899**************9865534433333333333333333333333333333333333333333322 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2       6.9   6.2e+03      11      24 ..     244     257 ..     244     260 .. 0.81
   2 ?   10.0   0.4   0.00072      0.65      13      35 ..     423     445 ..     420     447 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.9
      TPR_10  11 alrqrgrydeAeal 24 
                 alrqr+ + +A+++
  KKY16805.1 244 ALRQRYSRIRALED 257
                 68999999999987 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00072
      TPR_10  13 rqrgrydeAealleealairrrl 35 
                 ++r+++++A++ +e+al  r+++
  KKY16805.1 423 TARNDHKKAVKEYEKALKSREKA 445
                 78******************997 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   7.9     0.013        12     132     205 ..     418     492 ..     367     520 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.013
     DUF4407 132 taelaeleaqiaalqaeidaaearldalraeaqkeldgtk.gtgttgvaGkgpaake...kkaqldaaqaelaelkak 205
                 ++ l++++++ +++ +e+++a + ++++++++ k  + +k +++   +a   ++ak+   kk+++++ q+e  + +a+
  KKY16805.1 418 SDALKTARNDHKKAVKEYEKALKSREKAEQKLSKASEKEKmKNE---KAAAKAVAKAekaKKKEAATEQKERMKRQAT 492
                 34445555555555555555555555555555555554442222...2222222222111222222222222222222 PP

>> XRN_M  Xrn1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   8.1     0.013        12      80     203 ..     422     547 ..     408     553 .. 0.48

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.013
       XRN_M  80 frkrkeredrkekklakeeeaskedaaneeaavaeeklseskvaksaeaeaeaeaeaeaeakaekekrekaekeleeseeeeeeeDkvrL...geeGyk 175
                    r++++++ ++ ++  ++++k++++ ++a+ + ek++++k a   +a+a+ae +a++++ a+++k++   +++ + e ++ + D+ rL   ge G k
  KKY16805.1 422 KTARNDHKKAVKEYEKALKSREKAEQKLSKASEK-EKMKNEKAAA--KAVAKAE-KAKKKEAATEQKERMKRQATINPEIYDRQLDRDRLmgqGEGGPK 516
                 4445555555544444444444444444443333.3333333332..2222222.22222233333333333344445556666777777223455677 PP

       XRN_M 176 eRYYkekfev..sseeieqrre.vvqkYveG 203
                 ++    kf    s+++  qr    ++ Y+eG
  KKY16805.1 517 KKRKDRKFCSlpSKDSRGQRDPtWIRVYMEG 547
                 7777777766543333344444567777777 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   9.2     0.017        16     215     289 ..     414     490 ..     405     536 .. 0.45

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.017
  Presenilin 215 iYsatvvvlaaeek.kaevaeseee.eeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaees 289
                 +Ys++ +  +a+++ k++v+e e++ +++ek++++ s++s++e+ ++e++ ++a +++++++++e+++e++++ +++
  KKY16805.1 414 LYSTSDALKTARNDhKKAVKEYEKAlKSREKAEQKLSKASEKEKMKNEKAAAKAVAKAEKAKKKEAATEQKERMKRQ 490
                 66666666655544322222222220122222222222222222222222222211112222222222222222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2736  (0.152602); expected 358.6 (0.02)
Passed bias filter:                     1113  (0.0620782); expected 358.6 (0.02)
Passed Vit filter:                       253  (0.0141112); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.49
# Mc/sec: 3647.26
//
Query:       KKY16806.1  [L=375]
Description: putative snare complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-14   53.1   0.0    5.7e-14   52.1   0.0    1.6  1  PX        PX domain


Domain annotation for each model (and alignments):
>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   3.2e-18   5.7e-14      15     111 ..      15     112 ..       3     114 .. 0.88

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 3.2e-18
                 TTSSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHH..TSCHHHHSHHHHHHHH CS
          PX  15 gskkhsyylyevelktgakewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrll..nhpelrnsevlteFLe 111
                  s    y+ly+++++   ++ +v +rYsdF +L++ L+++  +    +lP+k +f++ + ++++ +e+rr+gLe yL+ +   +++ +rn+ + ++FL+
  KKY16806.1  15 SSTTPPYTLYNITCRLPVRSYSVAKRYSDFTSLNESLTQQVGAAPPASLPSKTWFSK-TISNPDLTETRRQGLETYLRTINtgTDSRWRNTAAWRSFLN 112
                 578889*************************************************97.9*******************775226888888999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1102  (0.0614647); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2533.32
//
Query:       KKY16807.1  [L=732]
Description: putative ku family dna [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-34  118.6   0.1    5.2e-34  117.7   0.1    1.3  1  Ku          Ku70/Ku80 beta-barrel domain
    3.3e-22   78.9   0.1    1.1e-21   77.2   0.1    1.9  2  Ku_PK_bind  Ku C terminal domain like
    1.3e-13   51.2   0.5    2.9e-13   50.1   0.5    1.6  1  Ku_N        Ku70/Ku80 N-terminal alpha/beta domain
    0.00052   20.3   0.1     0.0014   18.9   0.1    1.7  1  VWA         von Willebrand factor type A domain
  ------ inclusion threshold ------
      0.018   15.6   1.8      0.073   13.6   0.2    2.4  2  DUF2408     Protein of unknown function (DUF2408)
       0.18   11.6   1.6       0.39   10.6   0.3    2.3  2  DASH_Dam1   DASH complex subunit Dam1


Domain annotation for each model (and alignments):
>> Ku  Ku70/Ku80 beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.7   0.1   1.7e-37   5.2e-34       5     188 ..     241     446 ..     238     468 .. 0.86

  Alignments for each domain:
  == domain 1  score: 117.7 bits;  conditional E-value: 1.7e-37
          Ku   5 vsipVklykateeakkpkfkkldketne.......................pvkvetkyvcsdtg.....e.vdeedivkgyeyGgevvpltkeeleki 74 
                 ++i+V+ y++++ a++p+ + +  ++n                        +v+  ++y  +d++       +d+e++ kgyeyG+++v +++ +++  
  KKY16807.1 241 MTIDVERYSRVMIARAPTASSYVVRSNFsqdtapssatlgregeadgsgmaVVRNTYNYNIKDEDtasgkRaIDREELAKGYEYGRTIVHISESDQNIT 339
                 789999999999999999999666666678889999999999999999998777766666666545789955*************************55 PP

          Ku  75 ksfdskglkllgFvplseilkeylsikssyfiyPddkdekgstkafsaLveamleskkvaivrfvlrskskprlvaLvPqeeelsseeekeglvlvtLp 173
                 k  +++ l+l+gFvp+++  ++y+s  ++y++++++ +ek+   a+s++++a+ e++++ai+r+v ++ ++p++v L P+   ++ ++  e+l+  +Lp
  KKY16807.1 340 KLETEPALDLMGFVPKEK-YERYMSLSQTYIVIAQKVNEKAII-ALSSFIHALFELDTYAIARLVTKEGREPQIVLLAPS---IEPDY--ECLIETQLP 431
                 5566************88.*********************999.************************************...66665..7******** PP

          Ku 174 faddiRslkfpslde 188
                 fa+d+Rs++fp+ld+
  KKY16807.1 432 FAEDVRSYQFPPLDK 446
                 *************22 PP

>> Ku_PK_bind  Ku C terminal domain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.2   9.6e+03       2      22 ..     221     240 ..     220     242 .. 0.76
   2 !   77.2   0.1   3.8e-25   1.1e-21       1     105 [.     604     709 ..     604     716 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.2
  Ku_PK_bind   2 PvedFkkllaqkdeedlveka 22 
                 Pv++Fk +l+ +d  ++ ++a
  KKY16807.1 221 PVPSFKGTLRLGDP-EQYDSA 240
                 99999999998887.566666 PP

  == domain 2  score: 77.2 bits;  conditional E-value: 3.8e-25
  Ku_PK_bind   1 dPvedFkkllaqkdeedlvekavkqlksvIeqlvedslgdssydkaveclkalReeaieeeepelyNdFlrdlkkklqs.e.ggdrrefWkelvkkekl 97 
                 +++ d k+ l+ +d+ +++++ +kq +++ e+l+++s+gd++y++++e l +l++e+ie+eep+ +N+ lr lk+k+++ e ggdrre+W+ l++k++l
  KKY16807.1 604 NAIADLKQFLNLSDSVEALKDLAKQFQKIQEDLIKSSFGDQHYNRVIESLGVLKKELIEYEEPQIWNEILRALKRKVEReElGGDRRELWW-LMRKNRL 701
                 5799***********99*************************************************************977*********7.******* PP

  Ku_PK_bind  98 glIskdea 105
                 gl  + + 
  KKY16807.1 702 GLLGNGDE 709
                 **987554 PP

>> Ku_N  Ku70/Ku80 N-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.5   9.6e-17   2.9e-13       1     167 [.       6     164 ..       6     191 .. 0.83

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 9.6e-17
                 EEEEEEE-SHHHHCTTCCSCC.HHHHHHHHHHHHHHHHHHCTCSEEEEEEEE.SSSSTBS....TTTCTTEEEEEECCCHHHHHHHHHHCCHHHCCHHH CS
        Ku_N   1 avvfviDvspaMfesskeees.pfelalkciaellkrkvisrskDlIavvly.gtdesen....keqlenitvlreldlpdaellkelkqivesedasv 93 
                 a+v+++Dv+++M+++s++ ++ +fe a+ ++ + ++  v + +k+ +a v +   de++n    + +++n+ v+++l +  + +l  l++ +++     
  KKY16807.1   6 ATVYIVDVGKSMSHKSNGRTEtNFEFAMRYVWDRITTTVATGRKTFLAAVIAlKSDETNNeledDGSYANLNVVQPLSQIQMPELRYLQSSLKP----- 99 
                 69***************99999**********************9987666527788888**9999****************************..... PP

                 HCCCTTSS-TTHHHHHHHHHHHHHH.TTSSESEEEEEEEESSSSTCCGHHHHHHHHHHHHHHHHHHCTEEEEEEE CS
        Ku_N  94 eglaedssqasllsaLivclellqk.vgkklskkriflftdlddpfedsdklelilqklkakDlrderieldllk 167
                     ++ ++++  sa+i++ +++ k ++    k++i+l+td      d d +e i++k     ++++ +el +l 
  KKY16807.1 100 ----SHTENGDAISAIILAVMMILKeCKQLKYKRKIVLVTDGKGQM-DTDSIEDITKK-----IQEMSMELTVLG 164
                 ....99999*******999999666354444577899999998887.99999999999.....444444444433 PP

>> VWA  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   4.8e-07    0.0014      66     147 ..      95     173 ..      73     196 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.8e-07
                 HHHHTGSGGGGSSC-HHHHHHHHHHHHHHHHGTSSTTSEEEEEEEESS--CSS..HTHHHHHHHHGCTEEEEEEEESSSHHHHH CS
         VWA  66 salnnlkysgggttntgkalkyaleklfkssagaRenakkviilltdGksndg..dpkeaaneakeqgikvfavGvgnadekel 147
                 s+l+  ++ ++g++ + + + +++  l + ++    ++k+ i+l+tdGk +++  ++++  ++++e   ++ ++Gv+ +de+  
  KKY16807.1  95 SSLKP-SHTENGDA-ISAIILAVMMILKECKQL---KYKRKIVLVTDGKGQMDtdSIEDITKKIQEMSMELTVLGVDFDDEEFG 173
                 44444.44555555.555555555544444444...89************99559*********************88888754 PP

>> DUF2408  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   2.4e-05     0.073      17      97 ..     126     207 ..      53     218 .. 0.85
   2 ?    0.7   0.1      0.24   7.2e+02      40      67 ..     618     644 ..     571     680 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.4e-05
     DUF2408  17 sirrsLlslaakskaeeakeseevkeelkelkeeLkkieskrde.egkFkseegkevvekgqavlngLlddcfdlvedlkaq 97 
                 + +r+++ +   + + ++++ e+++++++e++ eL+ +    d+ e  Fk+e +++++ +++++l++L+ddc   +  l+a 
  KKY16807.1 126 KYKRKIVLVTDGKGQMDTDSIEDITKKIQEMSMELTVLGVDFDDeEFGFKEEGKSKHKAHNEKILRSLVDDCDGAFGTLEAA 207
                 45677777777777777777778****************9988834467777777788888***********9887777765 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.24
     DUF2408  40 vkeelkelkeeLkkieskrdeegkFkse 67 
                   e lk+l ++ +ki++   +   F  +
  KKY16807.1 618 SVEALKDLAKQFQKIQEDLIK-SSFGDQ 644
                 456777888888888877766.555333 PP

>> DASH_Dam1  DASH complex subunit Dam1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.1   3.4e+03      10      23 ..     144     157 ..     143     162 .. 0.78
   2 ?   10.6   0.3   0.00013      0.39       3      30 ..     610     637 ..     609     642 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.1
   DASH_Dam1  10 DsletLdknledLq 23 
                 Ds+e+++k++++++
  KKY16807.1 144 DSIEDITKKIQEMS 157
                 88888888888875 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00013
   DASH_Dam1   3 pafaeLaDsletLdknledLqqihesLs 30 
                 ++f +L+Ds+e+L++  +++q+i+e+L 
  KKY16807.1 610 KQFLNLSDSVEALKDLAKQFQKIQEDLI 637
                 6899*********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.48
# Mc/sec: 4609.47
//
Query:       KKY16808.1  [L=491]
Description: hypothetical protein UCRPC4_g05765 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0038   17.4   0.3       0.02   15.0   0.3    2.3  1  CRISPR_Cas2   CRISPR associated protein Cas2
  ------ inclusion threshold ------
       0.68   10.0  31.0        2.7    8.0   0.1    5.1  5  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C
        3.2    7.8  30.2       0.96    9.5   0.4    5.0  5  DUF1664       Protein of unknown function (DUF1664)
        8.9    6.6  13.4         24    5.2   0.4    5.0  5  WXG100        Proteins of 100 residues with WXG
         10    6.2  10.8        4.1    7.4   3.6    3.1  3  DUF1451       Zinc-ribbon containing domain


Domain annotation for each model (and alignments):
>> CRISPR_Cas2  CRISPR associated protein Cas2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.3   5.7e-06      0.02       8      68 ..     256     322 ..     254     328 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.7e-06
                  EC....HCHHHHHHHHHHHHHHTTEE..EEETTEEEEEESHHHHHHHHHHHHHHSHTTTCEEEEEEE CS
  CRISPR_Cas2   8 Di....kedrkrrrkvakilkkyGfq..rvQySVFegelseaqleklkkrlkkiidpeedsiriykl 68 
                  Di    ke+ +++++ ak l + +++   +Q+SV++ + + +++++l k++ +i+ + + si ++k 
   KKY16808.1 256 DInknlKENTEQLKRQAKQLINTNGTvsSLQNSVYMAKDTGSRFDNLSKDVADIKTETRNSITAVKS 322
                  666666778888888889888887653379**************************99889988665 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.24   8.5e+02      62      82 ..      43      63 ..      20      78 .. 0.61
   2 ?    4.7   3.1    0.0082        29      49      96 ..     147     194 ..     136     206 .. 0.49
   3 ?    6.4   7.9    0.0023       8.3      28     101 ..     214     289 ..     207     295 .. 0.87
   4 ?    8.0   0.1   0.00076       2.7      68     102 ..     298     332 ..     290     344 .. 0.77
   5 ?    2.7   0.2     0.032   1.2e+02      36      79 ..     396     453 ..     391     491 .] 0.46

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.24
  Baculo_PEP_C 62 dtrldtlltnLtdalnalqdt 82
                  d+++d+ +++Lt+++na  +t
    KKY16808.1 43 DKKFDERFHRLTEQINAQGKT 63
                  446777777777777764433 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0082
  Baculo_PEP_C  49 alsedlksllaeldtrldtlltnLtdalnalqdtlrneLtnlnsiltn 96 
                   ++s++l+++ +  +++l++ +++++++l + ++ ++++++ +++ +++
    KKY16808.1 147 QVSSRLNKAEKITTRKLNKIVSAINTKLSSESKLINQKIDDVKTAVNT 194
                   334444443333333444444444444444444444444444444443 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0023
  Baculo_PEP_C  28 qnvqilaqlatlldaietqLnalsedlk...sllaeldtrldtlltnLtdalnalqdtlrneLtnlnsiltnLlssv 101
                    ++++ aq+a  ++++++q+ ++ ++++   +l  e+++++ +  +nL++   +l+ +  ++L n+n  +++L++sv
    KKY16808.1 214 VKTETRAQMALHKQDLNKQMVDMRKSVEvtgNLAIEVKQNIRDINKNLKENTEQLKRQA-KQLINTNGTVSSLQNSV 289
                   4678899****************999974447899********************9665.68999**********98 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.00076
  Baculo_PEP_C  68 lltnLtdalnalqdtlrneLtnlnsiltnLlssvt 102
                    ++nL++ ++ ++++ rn +t+++s++++   s+ 
    KKY16808.1 298 RFDNLSKDVADIKTETRNSITAVKSDVAQFIDSLK 332
                   56789999999999999999999999988776664 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.032
  Baculo_PEP_C  36 latlldaietqLnalsedlksllaeldt..............rldtlltnLtdalnal 79 
                   ++  +++++tq+n+l+e+  +l +++d+               l+   ++L da ++l
    KKY16808.1 396 ISPVVNTLQTQVNDLTERYLALKSAFDShshpepsdlglvkqVLQRHEDALADAGKTL 453
                   3344555555555555555444444444444444433333334444444444444443 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.29     1e+03      63      80 ..      52      69 ..      32     114 .. 0.62
   2 ?    3.0   4.1     0.027        97      42     102 ..     137     198 ..     131     216 .. 0.72
   3 ?    3.7   5.9     0.017        59      35     102 ..     218     288 ..     209     301 .. 0.59
   4 ?    9.5   0.4   0.00027      0.96      73     116 ..     301     344 ..     293     349 .. 0.84
   5 ?    4.0   0.1     0.013        48      67     122 ..     431     486 ..     395     489 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.29
     DUF1664 63 hLssridrvdkkldeqke 80
                +L+++i+  +k+l ++k+
  KKY16808.1 52 RLTEQINAQGKTLSQVKQ 69
                233333333333333333 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.027
     DUF1664  42 avesvskqleqvseslaatkrhLssridrvdkkldeq.keiskeikeevtevredlseiged 102
                 a  +  k++ qvs+ l+++ +  +++++++ + ++   +  sk i++++++v+  +++  +d
  KKY16808.1 137 AWRKCNKSVMQVSSRLNKAEKITTRKLNKIVSAINTKlSSESKLINQKIDDVKTAVNTKTHD 198
                 55667788889999999988888888888887777551455677888888888777665555 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.017
     DUF1664  35 Tkrslsdavesvskqleqvseslaatkr...hLssridrvdkkldeqkeiskeikeevtevredlseiged 102
                 T+  ++   +++ kq+ ++ +s++ t +   + +++i  ++k+l+e++e  k  ++++ + ++ +s++++ 
  KKY16808.1 218 TRAQMALHKQDLNKQMVDMRKSVEVTGNlaiEVKQNIRDINKNLKENTEQLKRQAKQLINTNGTVSSLQNS 288
                 55555555555555555555555555432225556666666666666666666666666665555555554 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 0.00027
     DUF1664  73 kkldeqkeiskeikeevtevredlseigedvesvkeaveglesk 116
                 +  +++++i++e+++ +t+v++d++++ + ++ v++  + le+k
  KKY16808.1 301 NLSKDVADIKTETRNSITAVKSDVAQFIDSLKVVRDDLKALETK 344
                 445567899999********************999999999998 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.013
     DUF1664  67 ridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                 ++  v + l+  +++ ++  + + ++++  +++++ +e v++   + ++k+e+++e
  KKY16808.1 431 DLGLVKQVLQRHEDALADAGKTLVNAHDAFANMRDRLEVVEKRSATSAEKIESMDE 486
                 56677888888888889999999999999999999999999999999999999875 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       2.4   8.5e+03      54      81 ..      51      64 ..      44      69 .. 0.33
   2 ?   -1.5   0.1      0.88   3.1e+03      25      25 ..     161     161 ..     128     203 .. 0.63
   3 ?    5.2   0.4    0.0067        24      55      81 ..     249     275 ..     237     280 .. 0.77
   4 ?    2.5   0.0     0.048   1.7e+02       8      37 ..     298     327 ..     293     332 .. 0.82
   5 ?    4.8   0.1    0.0095        34      56      82 ..     435     461 ..     399     465 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.4
                HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100 54 eewkqaaqklvdaLeeisealkqaanaf 81
                ++++              e++++ ++++
  KKY16808.1 51 HRLT--------------EQINAQGKTL 64
                2222..............2222222222 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.88
                 H CS
      WXG100  25 d 25 
                  
  KKY16808.1 161 R 161
                 1 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0067
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  55 ewkqaaqklvdaLeeisealkqaanaf 81 
                 e+kq++++++++L+e +e+lk+ a+++
  KKY16808.1 249 EVKQNIRDINKNLKENTEQLKRQAKQL 275
                 788888888888888888888888876 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.048
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
      WXG100   8 elrqaaarfqkqaeeledelqrlkaevdal 37 
                 + +  +++++++++e ++ ++++k++v++ 
  KKY16808.1 298 RFDNLSKDVADIKTETRNSITAVKSDVAQF 327
                 567788999999999999999999999886 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.0095
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  56 wkqaaqklvdaLeeisealkqaanafe 82 
                 +kq +q+  daL++ +++l +a++af+
  KKY16808.1 435 VKQVLQRHEDALADAGKTLVNAHDAFA 461
                 677889999**************9998 PP

>> DUF1451  Zinc-ribbon containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.6    0.0012       4.1       2      81 ..     151     234 ..     150     243 .. 0.77
   2 ?    0.3   1.4      0.18   6.3e+02       8      54 ..     223     272 ..     216     313 .. 0.59
   3 ?    0.2   0.1       0.2   7.1e+02      22      61 ..     310     338 ..     277     353 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0012
     DUF1451   2 sleeaeekseeeleelvekakeklseaeeltkeelelvaeylkrDleeaarsleeske....eleewlsldlelieeslleala 81 
                 +l++ae+ ++++l+++v   ++kls +++l +++++ v+ +++   +++  + +  ++     ++++ + +++l ++ l ++++
  KKY16808.1 151 RLNKAEKITTRKLNKIVSAINTKLSSESKLINQKIDDVKTAVNTKTHDTTVAAKVHHDdlksLVKTETRAQMALHKQDLNKQMV 234
                 678999*************************************99998765555444412334556666666666666666655 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.18
     DUF1451   8 ekseeeleelvekakeklseaeelt...keelelvaeylkrDleeaarsl 54 
                   ++++l++ + ++++ ++ +++l    k+++  +++ lk+  e+++r+ 
  KKY16808.1 223 ALHKQDLNKQMVDMRKSVEVTGNLAievKQNIRDINKNLKENTEQLKRQA 272
                 45566666666666666666666651113333333333333333333333 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.2
     DUF1451  22 keklseaeeltkeelelvaeylkrDleeaarsleeskeel 61 
                 k+           e  +   ++k D++++ +sl+  +++l
  KKY16808.1 310 KT-----------ETRNSITAVKSDVAQFIDSLKVVRDDL 338
                 22...........344444566666666666665555533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2608  (0.145463); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 3152.36
//
Query:       KKY16809.1  [L=89]
Description: hypothetical protein UCRPC4_g05766 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0015   18.2  33.5     0.0018   17.9  33.5    1.2  1  SR-25            Nuclear RNA-splicing-associated protein
     0.0093   15.9  22.1      0.012   15.5  22.1    1.4  1  eIF3_subunit     Translation initiation factor eIF3 subunit
  ------ inclusion threshold ------
       0.02   15.2  16.4      0.023   15.0  16.4    1.1  1  DUF3807          Protein of unknown function (DUF3807)
      0.021   15.0  23.4      0.022   14.9  23.4    1.1  1  YL1              YL1 nuclear protein
      0.023   15.6  17.4      0.026   15.4  17.4    1.2  1  DUF1764          Eukaryotic protein of unknown function (DUF1
      0.026   13.9  17.9      0.027   13.8  17.9    1.1  1  Rtf2             Rtf2 RING-finger
       0.05   13.7  10.0      0.049   13.7  10.0    1.1  1  Eapp_C           E2F-associated phosphoprotein
      0.056   13.7  10.9      0.056   13.7  10.9    1.1  1  DUF4770          Domain of unknown function (DUF4770)
      0.076   13.1   6.7      0.073   13.1   6.7    1.1  1  PDCD2_C          Programmed cell death protein 2, C-terminal 
      0.079   13.2   8.2      0.096   12.9   8.2    1.0  1  DAG_kinase_N     Diacylglycerol kinase N-terminus
       0.08   13.3  21.1      0.086   13.2  21.1    1.1  1  Vfa1             AAA-ATPase Vps4-associated protein 1
       0.14   12.1  20.0       0.14   12.1  20.0    1.1  1  SRP-alpha_N      Signal recognition particle, alpha subunit, 
       0.14   10.4   7.0       0.13   10.5   7.0    1.0  1  OATP             Organic Anion Transporter Polypeptide (OATP)
       0.17   11.8  20.4       0.18   11.7  20.4    1.1  1  RPN2_C           26S proteasome regulatory subunit RPN2 C-ter
       0.19   11.0   2.9       0.18   11.0   2.9    1.0  1  DUF3438          Protein of unknown function (DUF3438)
       0.22   11.5   3.7       0.26   11.3   3.7    1.1  1  DUF3299          Protein of unknown function (DUF3299)
       0.23   11.8   4.8       0.28   11.6   4.8    1.1  1  SET              SET domain
       0.28   10.9  15.3        0.3   10.8  15.3    1.0  1  Connexin         Connexin
        0.3    9.8   5.8       0.27   10.0   5.8    1.0  1  Presenilin       Presenilin
       0.31   11.2   6.0       0.33   11.1   6.0    1.0  1  DDHD             DDHD domain
       0.31   10.4  10.8       0.33   10.4  10.8    1.0  1  SpoIIP           Stage II sporulation protein P (SpoIIP)
       0.54    9.7  16.4       0.66    9.4  16.4    1.2  1  Sec62            Translocation protein Sec62
       0.63    9.8  15.9       0.71    9.7  15.9    1.1  1  RR_TM4-6         Ryanodine Receptor TM 4-6
       0.69    9.6  12.0       0.76    9.5  12.0    1.1  1  EIIBC-GUT_N      Sorbitol phosphotransferase enzyme II N-term
       0.72    8.6  15.4       0.72    8.6  15.4    1.0  1  NPR3             Nitrogen Permease regulator of amino acid tr
       0.84    9.4  11.2       0.82    9.4  11.2    1.1  1  AAA_11           AAA domain
       0.91    9.8  20.4        1.1    9.5  20.4    1.2  1  GAGA_bind        GAGA binding protein-like family
       0.92   10.3  14.3        1.1   10.1  14.3    1.1  1  PRC2_HTH_1       Polycomb repressive complex 2 tri-helical do
       0.95    8.8   6.6       0.93    8.8   6.6    1.1  1  GNAT_acetyltr_2  GNAT acetyltransferase 2
          1    9.3  14.9        1.4    8.9  14.9    1.3  1  Jak1_Phl         Jak1 pleckstrin homology-like domain
        1.1    9.4  13.3        1.4    9.0  13.3    1.1  1  ORC_WH_C         Origin recognition complex winged helix C-te
        1.1    9.0  19.0        1.4    8.6  19.0    1.1  1  DUF3464          Photosynthesis affected mutant 68
        1.1    7.9   7.4        1.1    8.0   7.4    1.0  1  ALMT             Aluminium activated malate transporter
        1.2    7.3  14.5        1.3    7.3  14.5    1.2  1  CDC45            CDC45-like protein
        1.3    8.6   5.4        1.3    8.7   5.4    1.1  1  FAM176           FAM176 family
        1.6    7.8   4.5        1.6    7.9   4.5    1.0  1  Zip              ZIP Zinc transporter
        1.7    7.9  12.3        1.9    7.7  12.3    1.1  1  PPL5             Prim-pol family 5
        1.8    8.5   7.4          2    8.4   7.4    1.0  1  Neur_chan_memb   Neurotransmitter-gated ion-channel transmemb
          2    8.0   6.8        1.9    8.1   6.8    1.2  1  RabGAP-TBC       Rab-GTPase-TBC domain
        2.1    8.7   9.7        2.3    8.6   9.7    1.1  1  DUF4228          Domain of unknown function (DUF4228)
        2.2    7.2   5.8        2.1    7.3   5.8    1.0  1  CLN3             CLN3 protein
        2.3    8.7   9.0        2.8    8.4   9.0    1.2  1  Afi1             Docking domain of Afi1 for Arf3 in vesicle t
        2.3    7.0   8.1        2.3    7.0   8.1    1.0  1  Paramyxo_ncap    Paramyxovirus nucleocapsid protein
        2.3    6.9   6.2        2.4    6.9   6.2    1.0  1  FAM91_C          FAM91 C-terminus
        2.4    6.1  16.7        2.8    5.9  16.7    1.0  1  DUF2828          Domain of unknown function (DUF2828)
        2.5    7.0   5.1        2.7    6.9   5.1    1.0  1  ArAE_2_N         Putative ER transporter, 6TM, N-terminal
        2.7    6.7   4.4        2.6    6.8   4.4    1.0  1  Otopetrin        Otopetrin
        3.1    6.7   4.7        2.9    6.8   4.7    1.1  1  Membralin        Tumour-associated protein
        3.3    6.1   4.7        2.8    6.3   4.7    1.1  1  FHIPEP           FHIPEP family
        3.6    6.2   8.0        3.9    6.1   8.0    1.0  1  Folate_carrier   Reduced folate carrier
        3.7    7.9   9.8        4.8    7.6   9.8    1.1  1  AIF_C            Apoptosis-inducing factor, mitochondrion-ass
        4.2    7.0  21.5        5.2    6.7  21.5    1.0  1  Casc1_N          Cancer susceptibility candidate 1 N-terminus
        5.6    5.7  12.1        5.8    5.7  12.1    1.0  1  MDM10            Mitochondrial distribution and morphology pr
        7.3    4.4   9.7        7.6    4.3   9.7    1.0  1  V_ATPase_I       V-type ATPase 116kDa subunit family
        8.9    6.4  12.9         10    6.2  12.9    1.1  1  DUF4337          Domain of unknown function (DUF4337)
          9    6.7  26.5         13    6.2  26.5    1.3  1  Bud13            Pre-mRNA-splicing factor of RES complex
        9.3    6.7  17.5         12    6.3  17.5    1.1  1  RNA_pol_Rpc4     RNA polymerase III RPC4
         10    6.0  35.8         15    5.4  35.8    1.3  1  DUF1168          Protein of unknown function (DUF1168)


Domain annotation for each model (and alignments):
>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9  33.5     6e-06    0.0018      89     132 ..       9      53 ..       3      78 .. 0.48

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 6e-06
       SR-25  89 rkkrgkkkdkkkkkkkkk.kkkkkekkkakekakaeaaaaealpg 132
                 +kkr++k++kkkkkkkkk kkkkk+kkk+k+k+k++++  + + g
  KKY16809.1   9 EKKRKRKRKKKKKKKKKKkKKKKKKKKKKKKKKKKKKKVRQVMEG 53 
                 333333333333333333133333333333333444444444444 PP

>> eIF3_subunit  Translation initiation factor eIF3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5  22.1   3.9e-05     0.012      40      81 ..       6      46 ..       3      79 .. 0.49

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.9e-05
  eIF3_subunit 40 eeeeeeekekakkaaeakakaakakkkkskkqkiaekeerrk 81
                  eeee+++k k kk++++k+k++k+kkkk+kk+k+++k+ ++k
    KKY16809.1  6 EEEEKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKK-KKK 46
                  33333333333333222222222222222222222222.111 PP

>> DUF3807  Protein of unknown function (DUF3807)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0  16.4   7.5e-05     0.023     108     180 ..       9      87 ..       3      88 .. 0.34

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.5e-05
     DUF3807 108 ekkkkskkkskkkkkrakkakekkekkeekkidlrkrtwdkvdkglasl..dyddeeeeeqksa....ekaaqRrrisy 180
                 ekk+k+k+k+kkkkk++kk+k+kk+kk++kk++++k++ ++v +g+  +  dy+ + ++++ ++    + ++ Rr+  y
  KKY16809.1   9 EKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKVRQVMEGARWIirDYSCDLRAQERWKdwdgMDEMLRRTLGY 87 
                 2222222222222222222222222222223333333333333343332113333333333333345577777777666 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9  23.4     7e-05     0.022      70     114 ..       7      49 ..       4      83 .. 0.48

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  70 egekelerqerkkrkkekkkrkaqkkkskkkkkkqkkkkkkkidp 114
                 e+ek+ +r+++kk+kk+kkk+k  kkk+kkkkkk+kkkkkkk+ +
  KKY16809.1   7 EEEKKRKRKRKKKKKKKKKKKK--KKKKKKKKKKKKKKKKKKVRQ 49 
                 4445444444444433333333..222333332333333333333 PP

>> DUF1764  Eukaryotic protein of unknown function (DUF1764)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4  17.4   8.6e-05     0.026      18      59 ..       8      50 ..       3      78 .. 0.48

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.6e-05
     DUF1764 18 skkkkkekekeeeee.ekekkkkskkkkkkkkkkeeekkfeds 59
                ++kk+k+k+k+++++ +k+kkkk+kkkkkkkkkk+++kk+++ 
  KKY16809.1  8 EEKKRKRKRKKKKKKkKKKKKKKKKKKKKKKKKKKKKKKVRQV 50
                2223332222222221333333333333333333333333333 PP

>> Rtf2  Rtf2 RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8  17.9   8.8e-05     0.027     171     212 ..       6      47 ..       1      78 [. 0.51

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.8e-05
        Rtf2 171 tkeelellkarleeekakkkkkkkakkkkkakakgskaeaea 212
                 ++ee++ +++r +++k+kkkkkkk+kkkkk+k+k++k+++++
  KKY16809.1   6 EEEEKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKV 47 
                 344444444444433333333333333333333333222222 PP

>> Eapp_C  E2F-associated phosphoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7  10.0   0.00016     0.049      68     110 ..       5      47 ..       1      79 [. 0.53

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.00016
      Eapp_C  68 vdkeevlkykeaesekkkkkkkkskkkeekeeeaeaeeaeeee 110
                 v++ee+ ++++ +++kkkkkkkk+kkk++k++++++++++++ 
  KKY16809.1   5 VEEEEKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKV 47 
                 5555555555433333333333333333333333333333332 PP

>> DUF4770  Domain of unknown function (DUF4770)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7  10.9   0.00018     0.056      80     119 ..       8      47 ..       2      80 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.00018
     DUF4770  80 skkerkkqekkkkkrlklkkkkekkrkekekkkkknkkkl 119
                 ++k+rk+++kkkkk++k+kkkk+kk+k+k+kkkkk+kkk+
  KKY16809.1   8 EEKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKV 47 
                 3444444444444444444444444444444444444443 PP

>> PDCD2_C  Programmed cell death protein 2, C-terminal putative domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   6.7   0.00024     0.073       6      52 ..       4      46 ..       1      83 [. 0.39

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00024
     PDCD2_C  6 lvveeepeekekeeeseedkeekekseleellseeeeeekskeekes 52
                lv eee++ k+k+++++++k++k+k+++++  +++++++k+k++k++
  KKY16809.1  4 LV-EEEEK-KRKRKRKKKKKKKKKKKKKKK--KKKKKKKKKKKKKKK 46
                33.44422.122222222111111111111..111111111111111 PP

>> DAG_kinase_N  Diacylglycerol kinase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   8.2   0.00031     0.096     106     161 ..      10      65 ..       2      70 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00031
  DAG_kinase_N 106 seesllkskkkkkekkekkkksekkksseelkaatlpeeslllsqvvfLkDvvCyl 161
                   ++++++++kkkkk+kk+kkkk++kkk+++++k+++ + +++++    +++D +C l
    KKY16809.1  10 KKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKVRQVMEGARWIIRDYSCDL 65 
                   22333333333333334444444444444444444555666788888999999977 PP

>> Vfa1  AAA-ATPase Vps4-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2  21.1   0.00028     0.086      81     120 ..       7      46 ..       2      74 .. 0.43

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00028
        Vfa1  81 ekqkkkkekekkkkekdkkdkdkkkekekdkkkekekeee 120
                 e++kk+k+k+kkkk+k+kk+k+kkk+k+k+kkk+k+k+++
  KKY16809.1   7 EEEKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 46 
                 2222222222222222222222222222222212211111 PP

>> SRP-alpha_N  Signal recognition particle, alpha subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1  20.0   0.00044      0.14     188     235 ..       7      49 ..       3      86 .. 0.48

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00044
                  XXXXXXXXXXXXX..XXXXXXXXXXX....XXXXXXX..XXXXXXXXX CS
  SRP-alpha_N 188 edvsrrarkkankkrssagassgdeakasksskkkkkkpkkkgkkaRv 235
                  e+ ++r+rk+++kk+     ++++++k++k++kkkkkk+kkk+kk R+
   KKY16809.1   7 EEEKKRKRKRKKKKK-----KKKKKKKKKKKKKKKKKKKKKKKKKVRQ 49 
                  344555554444332.....1222222222222333323333333332 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   7.0   0.00042      0.13     243     284 ..      11      51 ..       1      88 [. 0.37

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00042
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 243 kkeerakkkseeesaekkeekkkkeksksseeeelkslkdfp 284
                 k+++++kkk+++++++kk++kkkk+k+k+++ +++k++++++
  KKY16809.1  11 KRKRKRKKKKKKKKKKKKKKKKKKKKKKKKK-KKKKKVRQVM 51 
                 2222222222222221111111111111111.2233333322 PP

>> RPN2_C  26S proteasome regulatory subunit RPN2 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  20.4    0.0006      0.18      71     108 ..      10      47 ..       3      72 .. 0.41

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0006
                 ------------------------------SS----SS CS
      RPN2_C  71 eedkmdvdeekeekekkekekkekekeeekkkkekekt 108
                 ++ k + +++k++k+kk+k+kk+k+k+++kkkk+k+k+
  KKY16809.1  10 KKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKV 47 
                 11111111111111111111111111112222222222 PP

>> DUF3438  Protein of unknown function (DUF3438)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.9   0.00057      0.18     111     155 ..       4      47 ..       1      78 [. 0.53

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00057
     DUF3438 111 ivlsedvetkrygekkakassksaaasseekeeeekakkepkret 155
                 +v++e+++ kr+ +kk+ +++k++++++++k++++k+kk+ k+++
  KKY16809.1   4 LVEEEEKKRKRKRKKKK-KKKKKKKKKKKKKKKKKKKKKKKKKKV 47 
                 45555444444443333.333333333333333333333334444 PP

>> DUF3299  Protein of unknown function (DUF3299)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   3.7   0.00083      0.26      11      64 ..      16      69 ..       2      74 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00083
                ..........HH....HHS-SSTT-S-TT----GGGTTEEEEEEEEEEEEEE-T CS
     DUF3299 11 eeraeellekkaealeeesdkalkqalksakvveeldgkkvrlpGyvvplevee 64
                ++++++ ++kk+++ +++++k+ k++ k++kv++ ++g++  +  y   l  +e
  KKY16809.1 16 RKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKVRQVMEGARWIIRDYSCDLRAQE 69
                233333333355666677777888899999********9999999998888554 PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.8   0.00089      0.28      65     118 ..      14      70 ..       2      76 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00089
                 HHHHHHHHHHHHHHHHHTHHHHHHHXTTTSX...XXHCCCCCHCCCHEEEETEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx RF
         SET  65 qklakdqkqaekedtdaalkasskaesdlna...skpeagafsaiagysidaralks 118
                 +k +k+ k+++k++ +++ k++ k+++++++   ++  +ga+  i+ ys+d ra++ 
  KKY16809.1  14 RKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKkkvRQVMEGARWIIRDYSCDLRAQER 70 
                 222222222222222222222222222222234599999999*********998875 PP

>> Connexin  Connexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  15.3   0.00098       0.3     101     151 ..       8      54 ..       1      70 [. 0.28

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00098
    Connexin 101 eekekekeeeekeeeekeeekkkkkekkkkkkkeeekekkkeegkrrirgg 151
                 eek++++++++k++++k+++k    +kkkkkkk+++k+kkk++ ++ ++g+
  KKY16809.1   8 EEKKRKRKRKKKKKKKKKKKK----KKKKKKKKKKKKKKKKKKVRQVMEGA 54 
                 122111111111111111111....11111122222222222222222222 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   5.8   0.00087      0.27     229     263 ..      11      45 ..       1      80 [. 0.41

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00087
  Presenilin 229 kaevaeseeeeeaekkkeeasesskeeeseeesse 263
                 k++++ ++++++++kkk+++++++k++++++++++
  KKY16809.1  11 KRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 45 
                 11111111111111111111111111111111111 PP

>> DDHD  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   6.0    0.0011      0.33     133     187 ..      10      61 ..       3      83 .. 0.40

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0011
        DDHD 133 ssksherasesskasqeskaaesstasssaksskaeekvelekvralnwwgRiDY 187
                 ++++ +r+++++k++   k+++++++++++k++k+++k+++++v +  +w   DY
  KKY16809.1  10 KKRKRKRKKKKKKKK---KKKKKKKKKKKKKKKKKKKKKKVRQVMEGARWIIRDY 61 
                 222222222222222...2222222222222233333444444333333333333 PP

>> SpoIIP  Stage II sporulation protein P (SpoIIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  10.8    0.0011      0.33      23      74 ..      10      45 ..       2      73 .. 0.39

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0011
      SpoIIP 23 paeesekeekekeeeeeeekeeeeeeeikkeekeeekekeedseeeeekldk 74
                ++++ + ++k+k+++++++k+++++++ kk+                +k++k
  KKY16809.1 10 KKRKRKRKKKKKKKKKKKKKKKKKKKKKKKK----------------KKKKK 45
                1111111111111111111111111111111................11111 PP

>> Sec62  Translocation protein Sec62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  16.4    0.0021      0.66       9      43 ..      13      47 ..       3      74 .. 0.41

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0021
       Sec62  9 kkvvralksekekkkskkkkeklkevkkkekaekv 43
                k+  +++k++k+kkk+kkkk+k+k++kkk+k++kv
  KKY16809.1 13 KRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKV 47
                11111111111111111111111111111111111 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  15.9    0.0023      0.71     119     159 ..       8      46 ..       3      67 .. 0.37

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0023
                 XXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXX CS
    RR_TM4-6 119 gekeekekekeeeekeseeeeeekkkkkkakskkkeeaeae 159
                 +ek++k+k+k++++k++++++++kk  kk+k+kkk++++++
  KKY16809.1   8 EEKKRKRKRKKKKKKKKKKKKKKKK--KKKKKKKKKKKKKK 46 
                 2222222221111111111111111..11111111111111 PP

>> EIIBC-GUT_N  Sorbitol phosphotransferase enzyme II N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  12.0    0.0025      0.76     118     164 ..       5      50 ..       1      61 [. 0.43

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0025
  EIIBC-GUT_N 118 adeeeeeeeeeeeekeeaeekekkketkkkiteqeekekkkgliaki 164
                  ++eee+++++++++k+++++k+kkk +kkk++++++k+kkk+ + ++
   KKY16809.1   5 VEEEEKKRKRKRKKKKKKKKKKKKK-KKKKKKKKKKKKKKKKKVRQV 50 
                  4444444444444443333333333.333333333333344444444 PP

>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  15.4    0.0023      0.72      36      79 ..       3      46 ..       2      76 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0023
        NPR3 36 vhvdedgkwrkskkkkkkskrkrssrskekkskesskksesssk 79
                v v+e++k rk+k+kkkk+k+k+++++k+kk+k+++kk+++++k
  KKY16809.1  3 VLVEEEEKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 46
                56777777777766554444444443333333333332222222 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  11.2    0.0027      0.82     128     191 ..      12      49 ..       2      80 .. 0.40

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0027
      AAA_11 128 eiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelskeleeaeesleee 191
                 +++k+++k+              k+kk+k+k+k+k++++++k kk++k++            ++
  KKY16809.1  12 RKRKRKKKK--------------KKKKKKKKKKKKKKKKKKKKKKKKKKV------------RQ 49 
                 111111111..............111111111111111111111111111............11 PP

>> GAGA_bind  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  20.4    0.0036       1.1     133     186 ..       8      52 ..       1      83 [. 0.30

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0036
   GAGA_bind 133 savvekeeaakkrqqgkrpkepkakkakkaarkpkeegedlalkkakrsksekk 186
                 ++ ++k++ +kk++++k++k++k+kk+kk+++k         +kk+k++++  +
  KKY16809.1   8 EEKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKK---------KKKKKKVRQVME 52 
                 222221111111111111111111111111111.........111222222222 PP

>> PRC2_HTH_1  Polycomb repressive complex 2 tri-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  14.3    0.0036       1.1      24      63 ..       7      46 ..       1      58 [. 0.36

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0036
  PRC2_HTH_1 24 yeekeeeseseskekksekkkkkkkaeedeekeekikkek 63
                 eek++++++++k+kk++kkkkkkk++++++k++k+kk+k
  KKY16809.1  7 EEEKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 46
                3333333333333333222222222222222222222222 PP

>> GNAT_acetyltr_2  GNAT acetyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   6.6     0.003      0.93     136     173 ..      10      47 ..       1      75 [. 0.42

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.003
  GNAT_acetyltr_2 136 ekeeeeeeekeeeeeklsleeeklkprkelpplllkls 173
                      +k+++++++k+++++k++++++k k++k+ ++   k+ 
       KKY16809.1  10 KKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKV 47 
                      11111111111111122222222222222222222222 PP

>> Jak1_Phl  Jak1 pleckstrin homology-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  14.9    0.0044       1.4      51      87 ..      10      44 ..       2      70 .. 0.44

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0044
    Jak1_Phl 51 segeksrkskekkkskkkkaeskkkkqeekekkeekW 87
                ++ +++rk+k+kkk+kkkk   kkkk+++k+kk++k 
  KKY16809.1 10 KKRKRKRKKKKKKKKKKKKK--KKKKKKKKKKKKKKK 44
                22222222222222222222..222222222222222 PP

>> ORC_WH_C  Origin recognition complex winged helix C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  13.3    0.0044       1.4      64     103 ..       7      46 ..       2      58 .. 0.35

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0044
    ORC_WH_C  64 kereedkeseaeeeekakeeeaekkkkkkekeedeedeee 103
                 +e++++k++++++++k+k+++++kkkkkk+k+++++++++
  KKY16809.1   7 EEEKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 46 
                 3333333333333222222222222222222222222222 PP

>> DUF3464  Photosynthesis affected mutant 68
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  19.0    0.0046       1.4      11      49 ..       9      48 ..       3      59 .. 0.41

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0046
     DUF3464 11 kkkrkkkpkkkkkskkakkeek.ekakeeekkdkeekeea 49
                +kkrk+k+kkkkk+kk+kk++k +k+k+++kk+k++k+ +
  KKY16809.1  9 EKKRKRKRKKKKKKKKKKKKKKkKKKKKKKKKKKKKKKVR 48
                3333333333333333333333123333333333333333 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   7.4    0.0035       1.1     354     397 ..       7      52 ..       1      85 [. 0.36

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0035
        ALMT 354 sekweaakkkekaeeveekkeeekeseskkeea..eaveeaesese 397
                  e+++ ++k++k++++++kk+++k++++kk+++  +++++ +++ e
  KKY16809.1   7 EEEKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKkkKKKKKVRQVME 52 
                 3332222222222222222222222222222221122222222222 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  14.5    0.0041       1.3     165     206 ..       8      47 ..       4      86 .. 0.44

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0041
       CDC45 165 eeskkkrksksdeeeesddddersrkrrrsepsakklrrqlk 206
                 ee+k+krk+k+++++++  ++++++k++++++++kk+++++ 
  KKY16809.1   8 EEKKRKRKRKKKKKKKK--KKKKKKKKKKKKKKKKKKKKKKV 47 
                 12222222111111111..11111111111111111111111 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   5.4    0.0042       1.3      49      88 ..      12      47 ..       1      82 [. 0.43

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0042
      FAM176 49 kdlerlkkkkkklkeesekasededeeeeeeeedssesea 88
                ++ +r+kkkkkk+k++    ++++ + +++++++++++++
  KKY16809.1 12 RKRKRKKKKKKKKKKK----KKKKKKKKKKKKKKKKKKKV 47
                1111111111111111....11111111122222222222 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   4.5    0.0052       1.6     134     174 ..       7      46 ..       1      69 [. 0.50

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0052
         Zip 134 eseekedhvaeadtdadskeelrngkqeksesekeqaseee 174
                 e+e+k++ ++++++++++k++++++k++k++++k++++ ++
  KKY16809.1   7 EEEKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKK-KK 46 
                 44444444444433333333333333333333333322.22 PP

>> PPL5  Prim-pol family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  12.3    0.0062       1.9     192     228 ..       9      44 ..       2      65 .. 0.36

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0062
        PPL5 192 sskkkskekkkklkkktsrkkkkegkkekesekeeed 228
                 ++k+k k+kkkk kkk+++kkkk++kk+k+++k+ ++
  KKY16809.1   9 EKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKK-KK 44 
                 2222222222111111111111111111111111.11 PP

>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   7.4    0.0066         2     147     207 ..      10      70 ..       3      83 .. 0.49

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0066
                     --------------SS---TTGGG--.....-----TTTTTHHHHHHHHHHHHHHHHHHHH CS
  Neur_chan_memb 147 lseeqgsekastckckckegeeaspstqlskeelspelkkavegvkyiadhlraededksv 207
                     ++++ + +k++++k k+k++++++++++++k+++++++++ +eg++ i +    +   ++ 
      KKY16809.1  10 KKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKVRQVMEGARWIIRDYSCDLRAQER 70 
                     2222222222222222223333333334444677777778888877776555444444444 PP

>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   6.8    0.0063       1.9      16      50 ..       9      50 ..       1      75 [. 0.60

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0063
  RabGAP-TBC 16 p.......evkrlkksekkqeksekeksklekseeskelsqI 50
                +       ++k++kk++kk++k++k+k+k++k++++k+ +q+
  KKY16809.1  9 EkkrkrkrKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKVRQV 50
                344444333334444444444444444444444444445555 PP

>> DUF4228  Domain of unknown function (DUF4228)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   9.7    0.0073       2.3     103     151 ..      10      51 ..       2      83 .. 0.37

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0073
     DUF4228 103 alaakkkkskkkrrsaaakk.sqssssesskgssssgrsrsrvlelkrel 151
                 +++++k +  kk++++++kk +++++++++k++++++++++r +     +
  KKY16809.1  10 KKRKRK-R--KKKKKKKKKKkKKKKKKKKKKKKKKKKKKKVRQV-----M 51 
                 111111.1..1111111111122222222222222222222222.....2 PP

>> CLN3  CLN3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   5.8    0.0069       2.1     171     231 ..      10      51 ..       1      79 [. 0.37

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0069
        CLN3 171 skkeakaeeeeeeyekleeeeeeeeeeseeeelleseaasaaeeeeeeesselkkslkekl 231
                 +k+++k+++                   ++++++++++++++++++++++++ kk++++ +
  KKY16809.1  10 KKRKRKRKK-------------------KKKKKKKKKKKKKKKKKKKKKKKKKKKKVRQVM 51 
                 111111111...................111111111111111111222222222222222 PP

>> Afi1  Docking domain of Afi1 for Arf3 in vesicle trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   9.0    0.0092       2.8      62      99 ..       8      45 ..       3      69 .. 0.41

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0092
        Afi1 62 eeleeeekknklekrkkkksededdvdeedeeeeddne 99
                ee+++++k++k++k+kkkk++++++ ++++++++++++
  KKY16809.1  8 EEKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 45
                22222222222222222222211222222222222222 PP

>> Paramyxo_ncap  Paramyxovirus nucleocapsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   8.1    0.0076       2.3     425     467 ..       8      50 ..       2      84 .. 0.43

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0076
  Paramyxo_ncap 425 seeeqkraskkeekrekqsrkearesskedkkkeatdeeaasl 467
                    +e+++kr+ kk++k++k+++k++++++k++kkk++++++  + 
     KKY16809.1   8 EEKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKVRQV 50 
                    2222223222222222222222222222222222222222222 PP

>> FAM91_C  FAM91 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   6.2    0.0077       2.4     286     334 ..       6      57 ..       1      72 [. 0.42

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0077
     FAM91_C 286 kteskvekeekkekeesekseaeltsessvkeeeekke...dsleleeeewv 334
                 ++e+k++k+++k+k++++k++++++++++ k++++kk+    + ++e ++w 
  KKY16809.1   6 EEEEKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKkkkVRQVMEGARWI 57 
                 3444443333333333333322222222222222222222233344444455 PP

>> DUF2828  Domain of unknown function (DUF2828)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  16.7    0.0091       2.8     141     183 ..       9      49 ..       2      66 .. 0.32

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0091
     DUF2828 141 kkkeekkkkkkkkkkekkkerkkeekekkeeekeeakekrkek 183
                 +kk+++k+kkkkk  +kkk++kk++k+kk+++k+++k+k+ ++
  KKY16809.1   9 EKKRKRKRKKKKK--KKKKKKKKKKKKKKKKKKKKKKKKKVRQ 49 
                 1111111111111..1111111111122222222222222222 PP

>> ArAE_2_N  Putative ER transporter, 6TM, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.1    0.0087       2.7     332     395 ..      18      85 ..       2      89 .] 0.63

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0087
    ArAE_2_N 332 kserssklaa...nghakldseieekkrevgayetkksiellear...daqrsltlsdldeviealrels 395
                 k+++++k  +   ++++k+++++++kk++  +++ +++++ + ++   d   ++  +d+d+  e lr++ 
  KKY16809.1  18 KKKKKKK--KkkkKKKKKKKKKKKKKKKKKKVRQVMEGARWIIRDyscDLRAQERWKDWDGMDEMLRRTL 85 
                 1122211..1222444444444444557777888888888888778999999999999999999999876 PP

>> Otopetrin  Otopetrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.4    0.0084       2.6      89     132 ..       3      44 ..       1      73 [. 0.42

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0084
   Otopetrin  89 vlvkeskkeitaylekeesaeeassssssaridalrkakkvltk 132
                 vlv+e++k+  +  +k++++++++++++++++++++k+kk  +k
  KKY16809.1   3 VLVEEEEKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKK--KK 44 
                 6666655542222222211111111111111111111111..11 PP

>> Membralin  Tumour-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.7    0.0095       2.9     114     153 ..      11      50 ..       1      79 [. 0.45

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0095
   Membralin 114 llkeasvtlleesvlevsleaeeeekessslkkeeelrsv 153
                 + k+  ++++++++++ + ++++++k++++ kk++++r+v
  KKY16809.1  11 KRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKVRQV 50 
                 1122222222222222222222222222333333333333 PP

>> FHIPEP  FHIPEP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   4.7    0.0089       2.8     301     326 ..      17      48 ..       1      82 [. 0.52

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0089
                 X.............XXXXXXXXXXXXXX.... CS
      FHIPEP 301 e......ekeeekeeeeeeaeeeeeeeeeeve 326
                 +      +k+++k+++++++++++++++++v 
  KKY16809.1  17 KkkkkkkKKKKKKKKKKKKKKKKKKKKKKKVR 48 
                 11111111111111112222222222223333 PP

>> Folate_carrier  Reduced folate carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   8.0     0.013       3.9     197     238 ..      11      52 ..       2      66 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.013
  Folate_carrier 197 skkdekseeeseeseeeenekeeeeeksseesekkvlklllk 238
                      +k+++++++++++++++++k+++++k++++++kk ++++++
      KKY16809.1  11 KRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKVRQVME 52 
                     223333333333334444444444444444444444444444 PP

>> AIF_C  Apoptosis-inducing factor, mitochondrion-associated, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   9.8     0.015       4.8      53      91 ..      12      44 ..       2      61 .. 0.32

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.015
       AIF_C 53 pkaaveesseesksekeeeaskekseekseeekkkkekk 91
                +k++ +++++++k++k+++++k+k+++      kkk+kk
  KKY16809.1 12 RKRKRKKKKKKKKKKKKKKKKKKKKKK------KKKKKK 44
                111111111111111111111111111......111111 PP

>> Casc1_N  Cancer susceptibility candidate 1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  21.5     0.017       5.2       5      73 ..       6      72 ..       3      77 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.017
     Casc1_N  5 eeEeeRlraeeeererleeerrekeereqlaaeqarrkeeleelkplleerkealeklkaeareaaeWe 73
                eeEe++ ++++++++++++++++k++++  +++++++k++ +++++++e  +  +++++ + r+++ W+
  KKY16809.1  6 EEEEKKRKRKRKKKKKKKKKKKKKKKKK--KKKKKKKKKKKKKVRQVMEGARWIIRDYSCDLRAQERWK 72
                5566666666666666666666655555..78889999999999************************8 PP

>> MDM10  Mitochondrial distribution and morphology protein 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  12.1     0.019       5.8     336     398 ..       8      70 ..       2      85 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.019
       MDM10 336 eesvkskkeakkkkkekekeeekstfssslekadkeksveesfqakleWrldkeekeeekkke 398
                 ee+++++k++kkkkk+k+k+++k++++++++k++k+k++ ++  +  +W  ++ + + +++++
  KKY16809.1   8 EEKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKVRQVMEGARWIIRDYSCDLRAQER 70 
                 222223333333344444444455556666777777777888888888888776665555444 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   9.7     0.025       7.6     641     696 ..      11      45 ..       1      62 [. 0.32

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.025
  V_ATPase_I 641 kkkkekkkeeeeeeeeeeeeeeeeeeeeaeeeeeeeeeeeeeeeeeeeeeeeeeef 696
                 k+k+++kk+                     ++++++++++++++++++++++++++
  KKY16809.1  11 KRKRKRKKK---------------------KKKKKKKKKKKKKKKKKKKKKKKKKK 45 
                 111111111.....................11111111111111111111111111 PP

>> DUF4337  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  12.9     0.033        10      60     101 ..      12      55 ..       2      77 .. 0.41

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.033
     DUF4337  60 lelllkak..aeelaaavdkkiakykkkiarykkekkeikkkAk 101
                  + ++k+k  +++++++ +kk++k kkk ++ kk+  +++++A+
  KKY16809.1  12 RKRKRKKKkkKKKKKKKKKKKKKKKKKKKKKKKKKVRQVMEGAR 55 
                 22222121112222222223333333333333333334444444 PP

>> Bud13  Pre-mRNA-splicing factor of RES complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  26.5     0.041        13      20      91 ..       8      81 ..       2      88 .. 0.44

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.041
       Bud13 20 aeaekkkkeeeekeekkkewgkGlvqkeekekrleelekekk.kplaryaddedlneelkekerwdD..Pmaafl 91
                +e+++k+k++++k++kkk+ +k +++k++k+k++++++k+++ ++ ar    +d+   l+++erw+D   m ++l
  KKY16809.1  8 EEKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKVRQvMEGAR-WIIRDYSCDLRAQERWKDwdGMDEML 81
                222222222222222222222222233333333333333333123333.45678888899999998622566665 PP

>> RNA_pol_Rpc4  RNA polymerase III RPC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  17.5     0.038        12      40      80 ..       9      49 ..       3      55 .. 0.33

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.038
  RNA_pol_Rpc4 40 kaeeeskaekasgaeaeekkskkksskkkkkkkskalklks 80
                  +++ ++k +k++++++++kk+kkk++kkkkkkk+k++k+++
    KKY16809.1  9 EKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKVRQ 49
                  22222222222222222222333333333333333333333 PP

>> DUF1168  Protein of unknown function (DUF1168)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  35.8      0.05        15      81     119 ..       7      45 ..       3      56 .. 0.36

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.05
     DUF1168  81 ektaKkrakRekkkqkakkkkkakkkkkkekekeeksed 119
                 e  +K+++kR+kkk+k+kkkkk+kkkkkk+k+k++k+++
  KKY16809.1   7 EEEKKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 45 
                 223333333333332222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4898  (0.273189); expected 358.6 (0.02)
Passed bias filter:                     1678  (0.0935914); expected 358.6 (0.02)
Passed Vit filter:                       661  (0.0368676); expected 17.9 (0.001)
Passed Fwd filter:                       143  (0.0079759); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              58  [number of targets reported over threshold]
# CPU time: 0.80u 0.40s 00:00:01.20 Elapsed: 00:00:00.52
# Mc/sec: 515.92
//
Query:       KKY16810.1  [L=146]
Description: putative fungal specific transcription [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0016   19.1   0.0      0.002   18.7   0.0    1.2  1  SnoaL_2   SnoaL-like domain
  ------ inclusion threshold ------
      0.028   14.8   0.0      0.034   14.5   0.0    1.2  1  DUF4440   Domain of unknown function (DUF4440)


Domain annotation for each model (and alignments):
>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.3e-07     0.002       2      86 ..      25     112 ..      22     130 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.3e-07
                 HHHHHHHHTT.CHHHHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEETT...EEEEEEEEEEEEETTSSEEEE CS
     SnoaL_2   2 raflaalnag.dldalaalfapdvvwedpggelrGreairaffralfaafpdlrfeihdvvadgd...rvavewtvtgtipatgrgvtv 86 
                 ++f+ a ++   ++  a++f++d+ ++ +  +++G+++i    ++++a+++ +++++ +++  g+   ++++++ v+  +  +g+++++
  KKY16810.1  25 EEFYKASDSPeTIESYADFFTDDASLTMASSSVKGKDEIITLRKGMWAHIGARKHTVPQIFPFGNdaeEAMLQGSVDF-TLINGKELSL 112
                 56677666542578999************99*****************************666652225555555544.3455555555 PP

>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.8e-06     0.034       1      71 [.      20      91 ..      20     125 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.8e-06
                HHHHHHHHHHHHHC.T-HHHHHHCEEEEEEEE-TTS-EEEHHHHHHHHHCCHCEEEEEEEEEEEEEEETTEE CS
     DUF4440  1 iaaleealeeafva.gdaealaallapdavlvgpsgtvldkeellealeagfaagrslelteeevrvlgdlA 71
                i++++e++++a  +  ++e +a+++++da l+ +s +v +k+e++   + ++a+    + t +++ + g+ A
  KKY16810.1 20 IKSFFEEFYKASDSpETIESYADFFTDDASLTMASSSVKGKDEIITLRKGMWAHIGARKHTVPQIFPFGNDA 91
                6677788888887647789****************************9999999999999999999997744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 954.28
//
Query:       KKY16811.1  [L=403]
Description: putative c2h2 finger domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0042   17.5   3.6      0.012   16.0   3.6    1.9  1  zf-C2H2    Zinc finger, C2H2 type
  ------ inclusion threshold ------
       0.66   11.0   3.0        2.4    9.2   3.0    2.0  1  zf-C2H2_4  C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   3.6   1.4e-06     0.012       2      20 ..     153     171 ..     152     174 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.4e-06
                 EETTTTEEESSHHHHHHHH CS
     zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                 kC+ Cgk +k++s L++H+
  KKY16811.1 153 KCDTCGKGYKHSSCLTKHM 171
                 8*****************9 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.0   0.00027       2.4       2      23 ..     153     174 ..     152     175 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00027
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkth 23 
                 kC+ Cgk ++ ++ L +H+  h
  KKY16811.1 153 KCDTCGKGYKHSSCLTKHMWEH 174
                 8*********9999*****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2842.47
//
Query:       KKY16812.1  [L=433]
Description: putative high-affinity nicotinic acid transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-32  110.2  27.3    1.2e-31  109.9  27.3    1.0  1  MFS_1            Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.9  27.3   6.7e-36   1.2e-31      38     352 ..      66     403 ..      44     404 .. 0.84

  Alignments for each domain:
  == domain 1  score: 109.9 bits;  conditional E-value: 6.7e-36
       MFS_1  38 ltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGail 136
                 +t+++++++++ +p   +  r+ +  +l + ++++++ ++l+ ++ s+  ll +r++ G+++++lfp+++++ + w+ + e     +++ +++s++ ++
  KKY16812.1  66 FTAFFFTYCAFEVPSNIILKRLRPSIWLPTIMVAWGIVMTLMGLVKSYSGLLTARIFLGVAEAGLFPGVVYYNTMWYCRYEIQVRQAYFFSAASVAGAF 164
                 89********************7777************777776677779************************************************* PP

       MFS_1 137 gpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee.....................kgtgpaplvp........aw 200
                   ll+  ++   g      Wr++f++ +i+++l+++  ++++++++pe + + ++ee+                              p        ++
  KKY16812.1 165 SGLLAYGISFMDGvgnlagWRWIFILEGILTVLVAI-TAFFVLVDYPETASFLTIEERafityrlkydnqspttsssslI--------PqteslsrkHL 254
                 ******7763333557777***************99.679999**********************887777444444430........34444445556 PP

       MFS_1 201 kallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgail.allagrlsdrlgrrrrlllallllllaalglallavts 298
                  + ++d ++w+ +i+  +  + ++g++ +lp++  + lg++   +++ ll ++  v+a++  +++++++dr  +r+r  ++l++l++ ++g++++  ts
  KKY16812.1 255 ISAFRDWQIWLNVIVYWGYVCPLYGISLFLPTI-IKELGYK--TTTAQLLTVPIYVTAGIiTIVIAYIADR--KRIRSPFILGGLITQLIGFIMCISTS 348
                 6677788888666666666679999*******7.*******..44444444444444433389********..99************************ PP

       MFS_1 299 savllllvlvliGfglgfvfpsllalasdla.ppeeagtasglfntagslggalg 352
                 s+ +++++++++ +g   ++ps ++++s+++ +  +++  +g+  ++g+l+g lg
  KKY16812.1 349 SPGVTYAGIFIAACGIYECQPSNITWLSNNLaGSYKRAVGMGIQISVGNLAGGLG 403
                 ***********999555566776666666665999*****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 3071.30
//
Query:       KKY16813.1  [L=442]
Description: putative vacuolar carboxypeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-27   96.5   0.0    2.2e-27   96.1   0.0    1.2  1  Peptidase_M20  Peptidase family M20/M25/M40
    5.3e-14   52.1   0.0      8e-14   51.5   0.0    1.3  1  M20_dimer      Peptidase dimerisation domain
    0.00039   20.2   0.0     0.0012   18.5   0.0    1.8  2  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.1   0.0   3.7e-31   2.2e-27       1     205 [.      84     435 ..      84     437 .. 0.88

  Alignments for each domain:
  == domain 1  score: 96.1 bits;  conditional E-value: 3.7e-31
                    EEEEES-BSSTTCGGGSSS...TTSEE..ETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT.THHHHHHH.....HH CS
                    xxxxxxxxxxxxxxxxxxx...xxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx.....xx RF
  Peptidase_M20   1 llgsHlDvVpeeetdgwtt...pfslt..eedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr.gGakalle.....gl 85 
                    +l++H+Dv p +++++wt    p+s+   e+++++yGrGa+dmk+g +a++ a   l++  i + g++ l+ + dEE+g+ +Ga++l++     g+
     KKY16813.1  84 ILNGHMDVFPSGPEKDWTPgrgPWSGYidEKENRIYGRGASDMKCGTAALIIAYTYLHKYRIHLTGNVGLTCTSDEETGGrWGARYLVDrtldsGF 179
                    589*******777789*9888******999999********************************************6666********6555322 PP

                    HTTTCESEEEEEEEESSSBTCHSTETEEEE.................................................................. CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................................. RF
  Peptidase_M20  86 eerekvdavfelhieepgileagklaigvv.................................................................. 115
                      + ++++ + ++  ep++ +  +  i+ +                                                                  
     KKY16813.1 180 --GTRWHGDL-MLNAEPSGIK--T--IRFGekgtlrltftvrtagahgaylhrsasatitaselilslrdlissisppifpslkaymsqphviegv 268
                    ..34555544.4456666666..2..333366888888999999**************************************************** PP

                    .........................................................................EEEEEEE.EEESHEEEC.CHHHH CS
                    .........................................................................xxxxxxx.xxxxxxxxx.xxxxx RF
  Peptidase_M20 116 .........................................................................kvevell.eggapvtln.dsplv 136
                                                                                             + +++   +g++  +++ d+p++
     KKY16813.1 269 draigagassiilkptlnigtlngglkvnmipsfctfeadirlpiglsgetvlslietqilpqyqsktplietEMQIQTSaSGSPGQPSPhDHPII 364
                    *********************************************************************99874555544566666666688**** PP

                    HHHHHHHHHHHTSCEEEEEES.SSBHTHHHH..TTTEEEEEEESSGGCTTSTTTEEEHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 137 kalaeaaeelfgekvelivsg.pggtdarff..agiptvmifgpgsglaHspnEyvdledlekgikvlarll 205
                    ++la+ a+ + g+  ++ + +  g++d++f   +g+pt+ ++g + +++ ++nE  +l+++ + ++vla+ +
     KKY16813.1 365 DLLASNAKHVAGLPDQPLAIPsLGASDCKFWrrEGVPTY-YYGVDAKGMGQVNESAKLDEFLTVARVLAASV 435
                    *********99988777778889*********9999*99.69977688999*****************9865 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   1.3e-17     8e-14       2     103 ..     202     330 ..     201     336 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 1.3e-17
                 EB-EEEEEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC................................TCCTCCCCCEECCE-CCCCEES CS
   M20_dimer   2 ghkGlaggkitvkgkagHsgapgagaNAieklarllaeledeegdia...........................eerslprttlnvtgiegGsaknvip 73 
                 g+kG +  + tv+  ++H+++ ++ a+A   +++l+ +l+d+ ++i                            ++ ++ ++tln+++++gG + n+ip
  KKY16813.1 202 GEKGTLRLTFTVRTAGAHGAYLHRSASATITASELILSLRDLISSISppifpslkaymsqphviegvdraigagASSIILKPTLNIGTLNGGLKVNMIP 300
                 89****************************************88888**************************************************** PP

                 SEEEEEEEEEHHHHHHHHHHHHHHHHHHTS CS
   M20_dimer  74 deaeakidiRllpgedpeevleeieeilek 103
                 + ++++ diRl+ g + e+vl  ie+ +  
  KKY16813.1 301 SFCTFEADIRLPIGLSGETVLSLIETQILP 330
                 ************************998765 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.1e-07    0.0012       1      85 [.      65     173 ..      65     223 .. 0.84
   2 ?   -1.6   0.0       0.3   1.8e+03     144     163 ..     386     405 ..     353     419 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.1e-07
                    EEEEEESTTCE....SEEEEEEEE--B-TTT..................TCC...T---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSC CS
  Peptidase_M28   1 Nviatlegkat....devlllgAHyDsvgvg..................rgp...ifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaE 71 
                    Nv+ ++eg++     ++ ++l++H+D  + g                  + +      GA D  +g+aal+   ++l +   +++ +v + +++ E
     KKY16813.1  65 NVVHDFEGGQLtsskPQKVILNGHMDVFPSGpekdwtpgrgpwsgyideK-EnriYGRGASDMKCGTAALIIAYTYLHKYRIHLTGNVGLTCTSDE 159
                    677777665544555889***********99********88888888652.1575568*********************88899************ PP

                    SG.SSHHHHHHHHHH CS
  Peptidase_M28  72 Ea.gllGSkafakak 85 
                    E  g  G+++++ ++
     KKY16813.1 160 ETgGRWGARYLV-DR 173
                    **8899*****9.44 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.3
                    STT-STTHHHHTTT--EEEE CS
  Peptidase_M28 144 grgrsDhspflkagvpvldl 163
                    + g sD   ++++gvp+  +
     KKY16813.1 386 SLGASDCKFWRREGVPTYYY 405
                    5678999********99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.50
# Mc/sec: 2683.96
//
Query:       KKY16814.1  [L=512]
Description: hypothetical protein UCRPC4_g05771 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        6.8    4.8   8.7        8.8    4.5   8.7    1.1  1  CDC45     CDC45-like protein
        8.4    5.2   7.7         12    4.7   7.7    1.1  1  DUF3435   Protein of unknown function (DUF3435)


Domain annotation for each model (and alignments):
>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   8.7   0.00099       8.8     138     196 ..     370     442 ..     343     498 .. 0.50

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.00099
       CDC45 138 eeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee...sddddersrkrrrse...........p 196
                  ++ e+dd +e+e  e+ + e+ + ++ +++++++++++++++    +++++++r+rr +e           +
  KKY16814.1 370 ASDPEEDDYDEDETVESLNAEHVSRNHARRERENRNWDERRNRlvaAERREREERERRIREeedleekfldlD 442
                 3333344433344444444444444444444555556666665665333333333333333244444444440 PP

>> DUF3435  Protein of unknown function (DUF3435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   7.7    0.0014        12     261     357 ..     345     440 ..     334     457 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0014
     DUF3435 261 assmsrsiDprrPkeL.tdeqkasveedpelqelkrkreelkkeleakygqvakakgtelyeelekakrelrnerqrlrrelkkkireeFkeeqpvid 357
                 a+    + + +rP++  t+ q+a+v +dpe       ++e  + l+a++ + ++a++  ++++  +++++l  +++r r+e  ++iree + e+ + d
  KKY16814.1 345 AAAATTTSNLKRPRRCrTNHQQATVASDPEEDDYD--EDETVESLNAEHVSRNHARRERENRNWDERRNRLVAAERREREERERRIREEEDLEEKFLD 440
                 5555667788888875478999*******966654..45556667889999999999999****************************9777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1114  (0.062134); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:00.51
# Mc/sec: 2997.36
//
Query:       KKY16815.1  [L=427]
Description: putative f-box domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-16   56.7   0.7     0.0034   17.3   0.0    6.4  6  LRR_6       Leucine Rich repeat
    9.8e-06   25.5   3.4        5.4    8.0   0.0    5.5  5  LRR_1       Leucine Rich Repeat
    0.00012   22.4   7.9        5.3    7.6   0.1    5.7  6  LRR_4       Leucine Rich repeats (2 copies)
     0.0042   16.8   2.0        0.7    9.7   0.0    4.7  6  LRR_8       Leucine rich repeat
  ------ inclusion threshold ------
        0.1   12.1   0.0       0.16   11.4   0.0    1.2  1  Baculo_p74  Baculoviridae p74 conserved region


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   4.3e-05      0.15       1      20 [.       7      27 ..       7      30 .. 0.93
   2 ?    4.0   0.1     0.018        64       4      23 ..      62      82 ..      60      83 .. 0.86
   3 !   17.3   0.0   9.5e-07    0.0034       3      24 .]     102     124 ..     100     124 .. 0.92
   4 ?   -1.0   0.0      0.69   2.5e+03       8      21 ..     133     147 ..     128     150 .. 0.71
   5 ?    4.2   0.1     0.015        53       5      24 .]     156     176 ..     154     176 .. 0.95
   6 !   10.6   0.0   0.00013      0.47       5      21 ..     184     201 ..     183     203 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.3e-05
       LRR_6  1 snthLteLdLsgNd.IgDeGa 20
                +++hL++L++ ++  I+ +G+
  KKY16815.1  7 NCPHLEYLNIDWCSgIDTKGL 27
                69*****************98 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.018
       LRR_6  4 hLteLdLsgNd.IgDeGaeaL 23
                +++ L Ls++d ++D+ ++ L
  KKY16815.1 62 TVERLFLSHCDsLNDDSLKVL 82
                678888**********99977 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 9.5e-07
       LRR_6   3 thLteLdLsgNd.IgDeGaeaLa 24 
                 + L++Ld+s +  ++D+G++++a
  KKY16815.1 102 RRLRHLDISRCRtLTDDGVKSMA 124
                 67******************986 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.69
       LRR_6   8 LdLsgNd.IgDeGae 21 
                 L L  N  ++D+ ++
  KKY16815.1 133 LRLGQNTtLTDDALM 147
                 777888888888766 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.015
       LRR_6   5 LteLdLsgNd.IgDeGaeaLa 24 
                 Lt+Ld+ + + I+++ +++La
  KKY16815.1 156 LTHLDMDDLEnITNASLQSLA 176
                 9****************9997 PP

  == domain 6  score: 10.6 bits;  conditional E-value: 0.00013
       LRR_6   5 LteLdLsgNd.IgDeGae 21 
                 L++L++s+++ +gD+G+ 
  KKY16815.1 184 LKHLSISFCEqVGDVGML 201
                 9***************86 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0023       8.2       1      13 [.      10      22 ..      10      48 .. 0.84
   2 ?    1.3   0.1      0.24   8.5e+02       3      22 ..      64      81 ..      62      91 .. 0.74
   3 !    8.0   0.0    0.0015       5.4       1      11 [.     103     113 ..     103     123 .. 0.81
   4 ?    0.9   0.0      0.33   1.2e+03       2      23 .]     156     175 ..     155     175 .. 0.72
   5 ?    3.1   0.0     0.058   2.1e+02       1      11 [.     183     193 ..     183     201 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0023
       LRR_1  1 nLrhLdLsnnpll 13
                +L++L++ +++++
  KKY16815.1 10 HLEYLNIDWCSGI 22
                69********974 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.24
       LRR_1  3 rhLdLsnnpllglppnsfqn 22
                ++L Ls++    l ++s+++
  KKY16815.1 64 ERLFLSHCDS--LNDDSLKV 81
                7899****94..55555554 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0015
       LRR_1   1 nLrhLdLsnnp 11 
                 +LrhLd+s+++
  KKY16815.1 103 RLRHLDISRCR 113
                 6*********8 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.33
       LRR_1   2 LrhLdLsnnpllglppnsfqnL 23 
                 L+hLd+ +  +  ++++s+q+L
  KKY16815.1 156 LTHLDMDDLEN--ITNASLQSL 175
                 89999877774..677777765 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.058
       LRR_1   1 nLrhLdLsnnp 11 
                 +L+hL +s + 
  KKY16815.1 183 QLKHLSISFCE 193
                 59*******96 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.035   1.3e+02      21      30 ..       7      16 ..       2      50 .. 0.82
   2 ?   -3.0   0.1       3.1   1.1e+04       4      11 ..      64      71 ..      54      80 .. 0.61
   3 !    5.1   0.1    0.0094        34       2      37 ..     103     142 ..     102     146 .. 0.66
   4 !    7.6   0.1    0.0015       5.3       3      40 ..     130     168 ..     128     176 .. 0.72
   5 !    7.3   0.0    0.0018       6.6       2      39 ..     155     198 ..     154     205 .. 0.63
   6 ?    2.7   0.1     0.053   1.9e+02       1      17 [.     208     224 ..     208     228 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.035
                H-TT--EEE- CS
       LRR_4 21 klpnLkeLdL 30
                ++p+L++L++
  KKY16815.1  7 NCPHLEYLNI 16
                5999999997 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.1
                -EEE--SS CS
       LRR_4  4 evLdLsnN 11
                e L Ls++
  KKY16815.1 64 ERLFLSHC 71
                33444443 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0094
                 S--EEE--SS.---E-S-...HHH-TT--EEE-.-S---- CS
       LRR_4   2 nLevLdLsnN.qltdipl...leklpnLkeLdLsgNnlit 37 
                 +L++Ld+s +  ltd +     +  p L+ L L +N+ +t
  KKY16815.1 103 RLRHLDISRCrTLTDDGVksmAYHVPFLEGLRLGQNTTLT 142
                 6999999998448863334433357888888886676665 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0015
                 --EEE--.SS---E-S-...HHH-TT--EEE-.-S-----GG CS
       LRR_4   3 LevLdLs.nNqltdipl...leklpnLkeLdLsgNnlitdld 40 
                 Le L L+ n+ ltd  l   +e+ p L++Ld+ +   +++++
  KKY16815.1 130 LEGLRLGqNTTLTDDALmdiFESGPALTHLDM-DD--LENIT 168
                 788999955589973337878889*******9.43..44443 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.0018
                 S--EEE--SS.---E-S-..HH...H-TT--EEE-.-S-----G CS
       LRR_4   2 nLevLdLsnN.qltdipl..le...klpnLkeLdLsgNnlitdl 39 
                  L++Ld  +  ++t  +l  l+    +++Lk+L++s++ +++d+
  KKY16815.1 155 ALTHLDMDDLeNITNASLqsLAkspAIDQLKHLSISFCEQVGDV 198
                 57777777511233333333223434888******999888887 PP

  == domain 6  score: 2.7 bits;  conditional E-value: 0.053
                 SS--EEE--SS---E-S CS
       LRR_4   1 pnLevLdLsnNqltdip 17 
                 +n ++L L n++++d+ 
  KKY16815.1 208 TNVTSLVLDNTRVSDLV 224
                 68999999999999985 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.15   5.3e+02      47      57 ..       7      17 ..       4      20 .. 0.58
   2 ?   -0.9   0.0      0.39   1.4e+03       7      22 ..      39      54 ..      36      71 .. 0.72
   3 !    4.8   0.0    0.0068        25      36      60 ..      89     113 ..      75     114 .. 0.87
   4 !    9.7   0.0   0.00019       0.7       1      57 [.     102     162 ..     102     167 .. 0.84
   5 ?    2.9   0.1     0.026        93      19      54 ..     148     184 ..     130     190 .. 0.67
   6 ?   -0.3   0.2      0.26   9.5e+02       2      15 ..     209     222 ..     208     223 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.15
                T--S-.EEE-- CS
       LRR_8 47 gLpsLrsLdLs 57
                ++p+L++L+++
  KKY16815.1  7 NCPHLEYLNID 17
                45555666555 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.39
                E-TTS--SEE-TTSST CS
       LRR_8  7 dLsnNrltslddeaFk 22
                dL+ + l +ldd++F 
  KKY16815.1 39 DLRASELRGLDDQSFM 54
                5677777777777774 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0068
                 ---GGGGGGGTT--S-.EEE--SS- CS
       LRR_8  36 llttlspgafsgLpsLrsLdLsgNr 60 
                 ++++l ++a++  ++Lr+Ld+s++r
  KKY16815.1  89 EIDVLTERAIVPPRRLRHLDISRCR 113
                 5889999**************9975 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.00019
                 TT-SEEE-TTS-.-SEE-TTSSTT.-TT--EEE--SS.---G.GGGGGGTT--S-.EEE-- CS
       LRR_8   1 pnLtsLdLsnNr.ltslddeaFkg.lsnLkvLdLsnN.lltt.lspgafsgLpsLrsLdLs 57 
                 ++L+ Ld+s+ r lt+ + ++    ++ L+ L L++N +lt     + f++ p+L++Ld++
  KKY16815.1 102 RRLRHLDISRCRtLTDDGVKSMAYhVPFLEGLRLGQNtTLTDdALMDIFESGPALTHLDMD 162
                 68**********9999998776655************877776447888888999999987 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.026
                 TSSTT-TT--EEE--SS.---GGGGGGGTT--S-.EE CS
       LRR_8  19 eaFkglsnLkvLdLsnN.llttlspgafsgLpsLrsL 54 
                 + F++ ++L++Ld+ +  ++t  s ++++  p++++L
  KKY16815.1 148 DIFESGPALTHLDMDDLeNITNASLQSLAKSPAIDQL 184
                 5677778888888776556777777777766666665 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 0.26
                 T-SEEE-TTS--SE CS
       LRR_8   2 nLtsLdLsnNrlts 15 
                 n+tsL+L+n+r ++
  KKY16815.1 209 NVTSLVLDNTRVSD 222
                 89999999999876 PP

>> Baculo_p74  Baculoviridae p74 conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.6e-05      0.16      48     112 ..     161     226 ..     146     228 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.6e-05
  Baculo_p74  48 ldlstsvtkkvlgegiksalvslvvnlairilgtia.kmvaktlasassvvgvvLivltlvdliLm 112
                 +d  +++t++ l+   ks  ++++ +l+i +  +++ + +  +l++a++v+++vL+ + + dl+Lm
  KKY16815.1 161 MDDLENITNASLQSLAKSPAIDQLKHLSISFCEQVGdVGMLPVLKAATNVTSLVLDNTRVSDLVLM 226
                 55556788888888899999************9998344778999********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2705.87
//
Query:       KKY16816.1  [L=698]
Description: putative trehalose synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-19   70.0   0.0      5e-19   68.5   0.0    1.8  2  Glycos_transf_1  Glycosyl transferases group 1
      1e-11   45.4   0.0    1.8e-11   44.6   0.0    1.4  1  Glyco_trans_1_4  Glycosyl transferases group 1
    0.00013   22.3   0.0    0.00032   21.0   0.0    1.6  1  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       1.1   6.5e+03      73      93 ..      22      42 ..      20      47 .. 0.76
   2 !   68.5   0.0   8.4e-23     5e-19      13     170 ..     463     637 ..     455     639 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.1
                     CGGGEEECCHSSSHHHHHHCE CS
  Glycos_transf_1 73 dnviflgevsredleellkna 93
                     ++++f  ++s+++l++l+k+ 
       KKY16816.1 22 HHHTFQVQSSQKQLDQLKKAR 42
                     788888888889999988875 PP

  == domain 2  score: 68.5 bits;  conditional E-value: 8.4e-23
                      TT-EEEEEESS-TTTTTHHHHHHHHHCCCCC......HCSCEEEEEES.............STTHHHHHHHHHHHCTTCGGGEEECCH.SSSHH CS
  Glycos_transf_1  13 ekkkiilsvgrlekeKgvdllikafallkkq......lnpnvklviaG............ngeeekelkklaeelelsdnviflgevs.redle 87 
                       ++ +i+ ++r+++ Kg+  ++ ++a+l+++      +++  +lviaG               +e ++  +     + ++vi l   + ++ l 
       KKY16816.1 463 PQRDYIVQIARFDPSKGIPDVLASYAKLRREyfkdtpRDQTPQLVIAGhsaiddpdgtriL--DETSYALENSYSDIANDVIALRVGPaDQILN 554
                      467899***********************99******9***************88665332..2223333333456779999999999788889 PP

                      HHHHCESEEEEEESSBSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHHH CS
  Glycos_transf_1  88 ellknadifvlpsisEgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlgenar 170
                      +l+++a+++++ s++Egf + + EA+  g+p+ia  agg++ +v+d  +G+lv+p+++ a a+++ +l +d+el+ r++e+a 
       KKY16816.1 555 TLMTAAKVALQLSTREGFEVKVSEALHKGVPIIAARAGGIPLQVEDKLSGFLVEPGDVSAVAKHLYDLFTDDELYSRMSEYAA 637
                      99999****************************************************************************96 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0     3e-15   1.8e-11       2     134 .]     466     625 ..     465     625 .. 0.77

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 3e-15
                      EEEEEES---GG.GTHHHHHHHHHHHH.....HH......EEEEEES---..............HHHHHHHTT-T.TEEEE---..TH..HHHH CS
  Glyco_trans_1_4   2 pvilfvGrleenvkgvdllleavpllr....kkd......vrlvivGdgp.rp...........eeleelaagleerveftGfv..ed..lael 69 
                        i+ + r+ ++ kg+  +l   ++lr    k d       +lvi+G +  ++            +le+  ++++++v+ +  v  +d  l+ l
       KKY16816.1 466 DYIVQIARF-DPSKGIPDVLASYAKLRreyfK-DtprdqtPQLVIAGHSAiDDpdgtrildetsYALENSYSDIANDVIALR-VgpADqiLNTL 556
                      5799999**.556***9999999999945541.144567679*****65342234543444333444433337778888776.4474458**** PP

                      HHH-SEEEE--..---SHHHHHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  70 laaadvfvaPs..egfglkllEamaaglpvVatdvggiaevv..gengllvppgdpealaeailrLled 134
                      + aa+v++  s  egf +k+ Ea+  g+p++a ++ggi+  v  + +g+lv+pgd++a a+++ +L++d
       KKY16816.1 557 MTAAKVALQLStrEGFEVKVSEALHKGVPIIAARAGGIPLQVedKLSGFLVEPGDVSAVAKHLYDLFTD 625
                      *********99999***********************9998877789*****************99987 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   5.4e-08   0.00032       2      82 ..     563     645 ..     562     654 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 5.4e-08
  Glyco_trans_1_2   2 vLnpsrsespnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaeht 82 
                      +L +s +e++ ++++Ea+  G+++++ +a g++  ++++ +++l+e  d+  +a+++  l +++e++++++e a  +v  e +
       KKY16816.1 563 ALQLSTREGFEVKVSEALHKGVPIIAARAGGIPLQVEDKLSGFLVEpgDVSAVAKHLYDLFTDDELYSRMSEYAATHVSDEVS 645
                      6889999*******************************************************************999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 4266.56
//
Query:       KKY16817.1  [L=444]
Description: putative c6 zinc finger domain containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-10   38.8   0.3    1.1e-09   37.8   0.3    1.6  1  Fungal_trans  Fungal specific transcription factor domain
  ------ inclusion threshold ------
      0.086   13.6   0.2        1.3    9.8   0.1    2.4  2  RNA_polI_A14  Yeast RNA polymerase I subunit RPA14


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.3   1.2e-13   1.1e-09       2     205 ..      73     276 ..      72     331 .. 0.73

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.2e-13
  Fungal_trans   2 drffsnfhpqfpilhkpsflpkt..ssenssksayaspllllailal.Galfsesetkesnssltsesqefiafplraeili..hedfsspssslwi 93 
                   +++ + f   + i+h psf++++  ++e +++++ a+   ll+++a+  + +++++ ++   s++   +e++ ++++a+ +    +  +     lw 
    KKY16817.1  73 QLYLETFETIYRIIHIPSFWNEYgrFWEDPHIARPAFIVILLLMMATvHCISLKEAPSYIGDSSRA--RETAVSFIEASETWlrRQTNKHLYLGLWQ 167
                   78999999****************999999999999988886666651444444444444333333..25566666444444333345555555666 PP

  Fungal_trans  94 lqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrpp.l..lddsqinlpLPc 187
                   + +Ll ++    t   ++  + ++g  vr a s g+hr+p   g+    k++++++++rrRlw ++  lD + ++  G p+ l  l+ + ++++  +
    KKY16817.1 168 IRCLLPIAKQANTVK-KKETWTIVGNLVRQAMSSGFHRDPVLLGP----KVSVFNQQMRRRLWATIVELDLQASIERGMPSaLaaLSSDTTRVSNID 259
                   666666666555555.799*************************5....6*******************************7544777777777666 PP

  Fungal_trans 188 ddddlwesddaseetlve 205
                   d+d ++e ++ + + ++ 
    KKY16817.1 260 DED-FNENSKQEPSQKPP 276
                   666.44444444444444 PP

>> RNA_polI_A14  Yeast RNA polymerase I subunit RPA14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00015       1.3      61      73 ..      27      39 ..      15      40 .. 0.84
   2 ?    1.0   0.0     0.083   7.4e+02      16      37 ..     136     157 ..     123     190 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00015
  RNA_polI_A14 61 sQLkRiqRdlrGL 73
                  s L R+qRdl+GL
    KKY16817.1 27 SSLPRVQRDLKGL 39
                  6799********9 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.083
  RNA_polI_A14  16 eevekfLteFIdekEssasela 37 
                   +++ ++  +FI+++E++    +
    KKY16817.1 136 SRARETAVSFIEASETWLRRQT 157
                   667778889******9765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 2718.04
//
Query:       KKY16818.1  [L=422]
Description: putative glycoside hydrolase family 16 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-08   32.1   1.0    1.3e-07   31.3   1.0    1.4  1  Glyco_hydro_16  Glycosyl hydrolases family 16
  ------ inclusion threshold ------
      0.024   14.3   0.0      0.036   13.7   0.0    1.2  1  DUF1926         Domain of unknown function (DUF1926)


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   1.0   1.4e-11   1.3e-07      28     135 ..     153     306 ..     110     317 .. 0.78

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 1.4e-11
                     E.......................EEEEEEEE..CCEESSEEEEEEEE---STTEEEEEEEET.GG....TSTTEEEEE.EEETT-TTE...... CS
  Glyco_hydro_16  28 k.......................esgsriks..kksflyGkvearikaaksaGvvtafylss.ed....ekahdEiDi.EflGndtgk...... 85 
                                             ++++ri++     ++yG+v++++k+a ++ + + ++++  e+    +++++ iD+    Gn+ +       
      KKY16818.1 153 GtctsntpsdciidvsessdivqpTKSGRITTknFAVIRYGRVDVTAKLAAGDWLLSQIMMQPaENyygpWPESGQIDLaMARGNNYSYgggggn 247
                     24444445555666666777777677******5223589**********************753336789*********7778888777899999 PP

                     ..EEEEEEBTTBSGE.......EEEEETSS-TTTS-EEEEEEEETTEEEEEETTEEEEE CS
  Glyco_hydro_16  86 ..vqtnvygkGkgkr.......ekrlslwfdptedfHtYaieWtpdkikfyVDgkpvrt 135
                       vq+ +++  ++++         r  l +  ++ +Ht+++eWt++++  + D ++ ++
      KKY16818.1 248 nvVQSSLHWGTDTTTdrwqlttGTREALHSTYSDGYHTFGLEWTHKYLFMWMDTRLAQV 306
                     ********988888555667777777779999**************9988888777665 PP

>> DUF1926  Domain of unknown function (DUF1926)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     4e-06     0.036      72     152 ..      59     136 ..      50     162 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4e-06
     DUF1926  72 sihelvkkkdeelkkeLvyDwyerkslvDhfldeeltlesfvqgelkeegDFanqpyeiekkkvevvlkrdGgvykkeitl 152
                 si++ v++k++  +k ++  ++ +k +vD f++ +++   +   ++ ++g F+n+++e++  ++e v+ rdG++  k++  
  KKY16818.1  59 SISNSVRSKKTYNPKPYFRSRRIKKVFVDDFSN-GFNSTIWS--REVQTGGFSNGEFEMTTGDDENVFVRDGNLIIKPTVQ 136
                 789999999999999999999*********985.55555554..4589*************************98444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 2643.21
//
Query:       KKY16819.1  [L=459]
Description: putative mfs transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-30  104.4  12.7      6e-30  104.4  12.7    3.2  3  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        1.1    7.5  11.6     0.0093   14.3   1.9    2.3  3  OATP      Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4  12.7   6.7e-34     6e-30       1     180 [.      74     249 ..      74     254 .. 0.90
   2 !    4.2  11.9    0.0019        17     222     352 ..     255     363 ..     252     364 .. 0.77
   3 ?   -4.1   0.4      0.65   5.8e+03     302     311 ..     428     437 ..     411     443 .. 0.42

  Alignments for each domain:
  == domain 1  score: 104.4 bits;  conditional E-value: 6.7e-34
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlg 98 
                 l+++a+l++l+ s++++a+p  ++++++ s   ig+  ++y +  + +++++G + + f  + ++++   +f++++++   ++++  +l+v+r++qG+g
  KKY16819.1  74 LCFSALLMSLNGSMVSTAIP-KITSHFN-SLEDIGWYGSAYLIPLCTLQPLIGKIYTYFPIKNTYVTFSGIFFVASAISG-SATSSkVLIVARAVQGIG 169
                 6899****************.*******.******************************777799999999999955555.356666************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperk 180
                 +++++ ++++ i++++p +++++++gl ++ +++G+++gpl+gg++++ ++Wr++fyi+ + + +++   +l++++ p + k
  KKY16819.1 170 GAGIINGALTTISAVVPVDKKPLYTGLCMGLAGIGSVIGPLIGGAVTEKISWRWCFYINLPPGGIVLC--ILFILTIPEQMK 249
                 *****************************************************************933..366555555544 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0019
       MFS_1 222 gfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfps 320
                 g+++l ++lp+++q v + s  l++g ++ l+ +++   + +++++s ++g       ++   ++++ + a+++            +liG+g g v  +
  KKY16819.1 255 GMMSLAYYLPIWFQVVKDAS-PLMSG-VMILPTAIS---QSVGAAVSGKFG-------MMTTYVISTGAGAWIGYQ----------ILIGLGRGPVLQM 331
                 677899**************.56666.466666666...889999999955.......566666666666777777..........6788888888888 PP

       MFS_1 321 llalasdlappeeagtasglfntagslggalg 352
                  + ++++l+p++  + a++ + +++ lg+a++
  KKY16819.1 332 PIIAIQNLLPAKDIAIATSNVFFFQFLGSAIF 363
                 88888888888888888888888888888875 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 0.65
       MFS_1 302 llllvlvliG 311
                  + +v ++ +
  KKY16819.1 428 GGSCVAFMTS 437
                 1222222222 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.9     1e-06    0.0093     132     192 ..     156     216 ..      72     229 .. 0.90
   2 ?   -1.5   0.7     0.062   5.5e+02     317     364 ..     259     305 ..     244     321 .. 0.67
   3 ?   -2.0   0.3     0.088   7.9e+02     139     189 ..     318     368 ..     301     376 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 132 vllfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslll 192
                   ++++a  ++GiG++ i++ +++ i   v   + ply g+ + l+ +G ++G l+G++++
  KKY16819.1 156 SKVLIVARAVQGIGGAGIINGALTTISAVVPVDKKPLYTGLCMGLAGIGSVIGPLIGGAVT 216
                 3489*****************************************************9876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.062
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 317 lpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkklklsakk 364
                 l  yl   F++ +  + l+ Gv+++p  a+ + +g  +  k+ + +  
  KKY16819.1 259 LAYYLPIWFQVVKDASPLMSGVMILPT-AISQSVGAAVSGKFGMMTTY 305
                 556677777777777777777666654.45666666666666665554 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.088
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 139 qlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGs 189
                 q+l+G+G+ p+  + i  i +    k+ ++  + ++++++lG a+  +lG 
  KKY16819.1 318 QILIGLGRGPVLQMPIIAIQNLLPAKDIAIATSNVFFFQFLGSAIFVALGE 368
                 899999999999999999999999999999999999999999998777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 2792.85
//
Query:       KKY16820.1  [L=155]
Description: hypothetical protein UCRPC4_g05778 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.49
# Mc/sec: 956.27
//
Query:       KKY16821.1  [L=357]
Description: putative 24 kda metalloproteinase precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.6e-109  366.1  19.3   1.9e-109  365.8  19.3    1.0  1  Peptidase_M35  Deuterolysin metalloprotease (M35) family
    2.8e-39  135.0  11.1      6e-39  133.9  11.1    1.6  1  Aspzincin_M35  Lysine-specific metallo-endopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M35  Deuterolysin metalloprotease (M35) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  365.8  19.3  2.2e-113  1.9e-109       5     347 ..       5     352 ..       1     356 [. 0.95

  Alignments for each domain:
  == domain 1  score: 365.8 bits;  conditional E-value: 2.2e-113
                    XXXXXXXXX.XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Peptidase_M35   5 tlasallal.asnvlalpaetde.spkldvtlsqvdntrikavvkntGseevtfvhlnffrdaapvkkvslfreetevefeGikrrlrteGlteea 98 
                     la+a++a+ a +++a p+  ++   ++ v+l  v+nt + avv nt  e ++++    f d   v+kvs+ ++++ev+f Gi + + +  l  ea
     KKY16821.1   5 LLATAIVAVmARSAIAHPVGLERrDSGISVELKPVSNTEVDAVVTNTAGEAISLLNYGTFFDDDKVQKVSVKQNGSEVPFLGILKNYLLTDLPAEA 100
                    699***99626789****976541569*****************************99999999******************************** PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXX-EEES--THHHHHHH CS
  Peptidase_M35  99 lttlaaGetledefdiastsdlseGGavtirsdGfvpivtd..gkvtGyipyksneleievdaakaaavtkalk..lldrrtkvascsgsresals 190
                    +ttla+Ge++    +i +  +++ GG  +i s G +p ++   ++++G + ++sn l + +d+  aaav  a++   +d+rt + +csgs+ ++l 
     KKY16821.1 101 FTTLAPGESVSTTINIPAIHEVA-GGDYSIVSFGALPYAKAdsTELAGAVNFESNTLAMSIDGEVAAAVKPAISrrSIDKRTVIQNCSGSKGTSLR 195
                    *******************9986.8999*********987512579**************************973369****************** PP

                    HHHHHHHHHHHHHHHHHHHS-HHHHHHHHS---HHHHHHHHHHHHHHHHHHT-SB-SS-EEESS-SSS---TT--EEEEGGGTEEEE-HHHHHH-- CS
  Peptidase_M35 191 talknavklanaaasaaesGssskfeeyfkttssstrtsvaarlravakeasstssGsttyycndtyGycesnvlaytlpakniiancdiyysylp 286
                    +al+nav l+n+aa+aa sGs+s f+ y+k+tsss+r+ vaar++ v  easst++G tty c+d y  c s vlayt p+ n iancd+yys lp
     KKY16821.1 196 NALSNAVTLSNNAATAATSGSTSTFNTYYKSTSSSVRSIVAARFEGVVTEASSTTTGATTYSCTDDYDVCTSGVLAYTYPSLNHIANCDLYYSDLP 291
                    ************************************************************************************************ PP

                    SS--STT---HHHHHHHHHHT-TTTSSS--B----SHHHHHTS-HHHHHTBHHHHHHHHH. CS
  Peptidase_M35 287 alartchaqdqatttlhefthapgvyspGtddlgyGydaatalsasqallnadsyalfang 347
                     l++tchaqdq+ttt+hefthapg yspGtdd++yGy+a+tals+sqa+lnad+yal+an+
     KKY16821.1 292 LLTTTCHAQDQTTTTIHEFTHAPGTYSPGTDDYAYGYSASTALSSSQAVLNADTYALYANA 352
                    ************************************************************5 PP

>> Aspzincin_M35  Lysine-specific metallo-endopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9  11.1   6.7e-43     6e-39       2     145 .]     210     351 ..     208     351 .. 0.97

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 6.7e-43
  Aspzincin_M35   2 aaaaksdtarfktwFgttdqstrskvaavfskiakeckslnsgsltyscsdvkgsCksevlAytvpsslnviylcpaffs.lpeltkkctgtdsqa 96 
                    +aa++++t+ f+t++++t++s rs vaa+f+++ +e +s+++g +tysc+d+++ C+s+vlAyt+ps  n+i +c+ ++s lp lt++c+++d q+
     KKY16821.1 210 TAATSGSTSTFNTYYKSTSSSVRSIVAARFEGVVTEASSTTTGATTYSCTDDYDVCTSGVLAYTYPSL-NHIANCDLYYSdLPLLTTTCHAQD-QT 303
                    4566999*************************************************************.*********999************.** PP

  Aspzincin_M35  97 gtivHEltHftev..agtdDiaygqsaakslaksnpsqAleNADsyeyFae 145
                    +t++HE+tH++ +  +gtdD+ayg+sa+++l   ++sqA+ NAD+y+++a+
     KKY16821.1 304 TTTIHEFTHAPGTysPGTDDYAYGYSASTAL---SSSQAVLNADTYALYAN 351
                    ***********9999****************...***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2625.02
//
Query:       KKY16822.1  [L=78]
Description: hypothetical protein UCRPC4_g05780 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.4   0.5      0.014   15.3   0.5    1.2  1  HetR_C    Heterocyst differentiation regulator C-terminal Hoo


Domain annotation for each model (and alignments):
>> HetR_C  Heterocyst differentiation regulator C-terminal Hood domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.5   7.9e-07     0.014      12      55 ..       3      50 ..       1      72 [. 0.79

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.9e-07
      HetR_C 12 dtary.frlmrdwaerkpkvlr...vleeldippekleqaleeldeii 55
                dta     lm ++ erkpk++r   +++ ld+ p++++ a +++d  +
  KKY16822.1  3 DTANMpSVLMCQFDERKPKIIRqssLMDMLDMEPDEVDAAAADVDVAV 50
                56655135899**********95545788999***********99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 531.88
//
Query:       KKY16823.1  [L=354]
Description: putative vitamin b6 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-07   30.0  27.6      4e-07   29.2  27.6    1.4  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami
  ------ inclusion threshold ------
          5    5.3   8.4        7.1    4.8   8.4    1.2  1  DUF2070         Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2  27.6   4.5e-11     4e-07      10     258 ..      76     302 ..      70     319 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 4.5e-11
  Transp_cyt_pur  10 ktlnlfsiWlganlnintwvigalg.lalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvviaivwfgv 103
                       +++ siW++ nl  n ++ig lg +++gL+  +s+++ ++g+ +g i++  ++ +G+  G +  + +R+  G ++  + +ll +v+ +++  v
      KKY16823.1  76 DYYDMTSIWFSVNLTANILTIGVLGpVSFGLGGLDSMMCCLFGTAFGSIATCYMASFGPMSGNRSLVNARFTMGWWATKVCVLLALVVILGYGMV 170
                     56899*******************************************************************************88888888887 PP

  Transp_cyt_pur 104 qawiGsealllmlgkifgkwleiggailgtsltel.vtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaegGpvldkavkl 197
                      a++ +  ++ +     g       ++++ +l ++ +t+f+   ++ ++ ++ v+++ ++f++  +++p + + + +++++ka +G+ +++    
      KKY16823.1 171 DAVTTGLIFSAV----SG-------GSVIFGLIVWaITAFGIKYLKYYERYAFVPQVCALFALVGVAAPHMNVHVKSTMVGKALVGARVSYF--- 251
                     777777665544....33.......35666666664799**********************************************9999933... PP

  Transp_cyt_pur 198 gkselflsavagvlagfatlilnapD.Ftryaktkkssvkiqlvavpllftlllligilvaa 258
                               +++++g+  +++ ++D Ft y +  +s v +  +++ ++  + +++  l++a
      KKY16823.1 252 ----------FTCASGPLGWAPFIGDaFTYYSP-STSRVGVISMTFLGFIGSKIFVQFLGIA 302
                     ..........34555555555555584665555.5566666666666666666666666655 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   8.4   0.00079       7.1      13     113 ..     150     252 ..     140     310 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.00079
     DUF2070  13 swkvsllliillalligllaflssklfgillfglp.alvaflltlpvlrilggr..ltykrslflalltelivviisllaillsallqalvllalvlsl 108
                  w + + +++ l++++g+  +++   +g+++  ++   v f l  +++  +g++   +y+r +f+  +++l++++ + ++ + +++ +++v  alv + 
  KKY16823.1 150 WWATKVCVLLALVVILGYGMVDAV-TTGLIFSAVSgGSVIFGLIVWAITAFGIKylKYYERYAFVPQVCALFALVGVAAPHMNVHVKSTMVGKALVGAR 247
                 566888888888888888888888.6888888888866666666677777888785777788*************888888888777999999998884 PP

     DUF2070 109 alvfa 113
                 +++f+
  KKY16823.1 248 VSYFF 252
                 44443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 2213.19
//
Query:       KKY16824.1  [L=342]
Description: putative methyltransferase domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-07   31.5   0.0      0.017   15.0   0.0    2.2  2  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.077   13.7   0.1       0.59   10.9   0.1    2.4  2  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.9e-06     0.017      20      58 ..     106     164 ..      85     166 .. 0.67
   2 !   14.7   0.0   2.3e-06      0.02     108     164 ..     166     236 ..     164     237 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.9e-06
  Methyltransf_23  20 lraggrvLdiGcGtGil..................levlrengf..svtgvDlspeave 58 
                       + ++++Ld+G+GtGi+                  ++ l e  +  +v+g Dlsp++ +
       KKY16824.1 106 VKNPQSILDVGTGTGIWvidvadetpsamgneafvSDFLHEIDAdsTVIGTDLSPIQPS 164
                      46788************666666655555555554333333333558999999998765 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 2.3e-06
  Methyltransf_23 108 llkpgGylllseplaslkedrllld............wlylvpagrhi..sffsarslkelleeaGlevve 164
                      +lkpgGy+++++++  + +d   ld            ++++ +a++h     f+ ++l++ + +aG+e+v+
       KKY16824.1 166 HLKPGGYIECQDYDFMARSDDGTLDpdgaivrwcslmNEAAENAEEHPftGRFTGQELEKYMIDAGFEDVT 236
                      79**********8666545555555566666655555566677778888888999*************997 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   6.6e-05      0.59       1      19 [.     112     130 ..     112     164 .. 0.78
   2 ?   -1.3   0.0      0.41   3.7e+03      37      69 ..     205     237 ..     200     257 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.6e-05
                      EEEET-TTSHHHHHHHCTS CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl 19 
                      +Ld+G+GtG +++++a++ 
       KKY16824.1 112 ILDVGTGTGIWVIDVADET 130
                      8***************995 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.41
                      HHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEE CS
  Methyltransf_25  37 areraeeeglnvefvqgdaedlpfedgsfDlvv 69 
                      a+e+aee+ +  +f  +++e++  ++g  D+ v
       KKY16824.1 205 AAENAEEHPFTGRFTGQELEKYMIDAGFEDVTV 237
                      555555444455555555555544444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2326.18
//
Query:       KKY16825.1  [L=412]
Description: putative cytochrome p450 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-51  175.3   0.0    2.5e-51  174.9   0.0    1.1  1  p450      Cytochrome P450
  ------ inclusion threshold ------
      0.056   12.3   0.0      0.085   11.7   0.0    1.2  1  DUF759    Borrelia burgdorferi protein of unknown function (D


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.9   0.0   2.8e-55   2.5e-51      83     438 ..      22     382 ..       5     400 .. 0.83

  Alignments for each domain:
  == domain 1  score: 174.9 bits;  conditional E-value: 2.8e-55
                 TTSSSTTCGH.HHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCS....EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH.HHHHH CS
        p450  83 kgkgvlfang.ekwkklRrfltptltsfgkl.sleelveeeaedlveklrkkagess....elditellskaaldvigsilFgarfdlledek.lselv 174
                 k ++v+  ++ +++  lR  + +   ++     le+ ++  ++d+++ +rkk  + +     ld + + +++++dv+++++Fg++f+ l+++k   +++
  KKY16825.1  22 KINNVISERSeKRHNALRAKMAMGYSGK-ENpLLEKSIDNRIQDMINLIRKKYISEGtqyrPLDFAVIAQYFTMDVLTDVAFGEPFGYLKNDKdMYDYI 119
                 4445555554455555666555555555.55579*****************9888888999**************************887666445555 PP

                 HHHHHHHH....HHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHH CS
        p450 175 kaveelss....llskssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvle 269
                 k ++  +      ++++ +++++  +++k l+ ++ ++l  +   ++ +++++++er    + +   r d+l  ++           l+++e   + l 
  KKY16825.1 120 KTIRGFMPvlelQTNSPLTNYIMSSRVVKALLAPTAKDLTGM-GPVIRIAQEVVRERFGPNKIE---REDMLGSFVRH--------GLTQQEAESESLL 206
                 55555554441144455555555555**************99.999999999999999998888...99*******99........6************ PP

                 HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTT...T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEES.SSCEEETTEEE-TT-EEE CS
        p450 270 llfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkr...eptyddlqklpyldavikEtLRlhpvvplllpRev.tkdvvirgylipkGtevi 364
                  ++aG d t+++++ +L++++ +P v +kl+ Eide+ ++     ++t ++ ++lpyl+avikE LR+ p++  l+++ v ++  +i+g +ip Gte+ 
  KKY16825.1 207 QIMAGADSTATAIRSTLLYIISHPRVYNKLQAEIDEAERNGAisnPITNNEAKNLPYLQAVIKEGLRIFPPLTGLMTKLVpPEGDTINGQFIPGGTEIG 305
                 **************************************7777789****************************44444441569*************** PP

                 EEHHHHHT-TTTS.SSTTS--GGGGB-TTS..CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEES CS
        p450 365 vnlyalhrdpevf.pnPeeFdpeRFldekg..nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelq 438
                  n++++h+++e f +++  F+peR+l+++       ++   l FG G+  C+G ++A+ el+  + +lL++F+++l 
  KKY16825.1 306 YNAWGTHHRKETFgEDAILFRPERWLEADPdqLRAMENSNELVFGSGRYKCLGHPVAHIELNKTFLQLLRTFDFQLA 382
                 ***************************9988744578888899*******************************984 PP

>> DUF759  Borrelia burgdorferi protein of unknown function (DUF759)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.5e-06     0.085     315     399 ..     185     269 ..     179     280 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.5e-06
      DUF759 315 emfkdfksfgltkkvnnaesiqsnlasaeqtlsnltttvldplld..linkitakikdfdfekdiinpiingiksifnlnyffaklk 399
                 +m+  f   glt++  ++es+   +a a+ t + + +t+l  + +  + nk+ a+i++ + +  i npi n      nl y+ a +k
  KKY16825.1 185 DMLGSFVRHGLTQQEAESESLLQIMAGADSTATAIRSTLLYIISHprVYNKLQAEIDEAERNGAISNPITNN--EAKNLPYLQAVIK 269
                 68899999*******************************9988644499********************996..4457777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2715.08
//
Query:       KKY16826.1  [L=1164]
Description: putative h k atpase alpha [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-41  141.8   1.1    1.6e-41  141.8   1.1    2.7  3  E1-E2_ATPase     E1-E2 ATPase
    9.8e-34  116.6   4.6    9.8e-34  116.6   4.6    2.7  3  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    1.5e-19   71.1   0.4    4.6e-09   36.9   0.5    3.2  2  Hydrolase        haloacid dehalogenase-like hydrolase
    1.4e-16   60.3   0.0      3e-16   59.3   0.0    1.6  1  Cation_ATPase    Cation transport ATPase (P-type)
      7e-11   41.6   0.0    1.5e-10   40.6   0.0    1.6  1  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
     0.0028   17.4   0.1      0.006   16.3   0.1    1.5  1  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.62    8.2   5.8      0.047   11.9   0.8    1.5  2  Dpy19            Q-cell neuroblast polarisation


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0       0.1   2.7e+02     117     157 ..     108     147 ..      79     157 .. 0.73
   2 !  141.8   1.1   6.3e-45   1.6e-41       2     181 .]     174     372 ..     173     372 .. 0.94
   3 ?   -3.0   0.7       1.8   4.5e+03     145     165 ..     991    1014 ..     942    1021 .. 0.60

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.1
                   HHHHHHHHHHHHHHHHHHHS-STTTSSTT...HHHHHHHHHHHH CS
  E1-E2_ATPase 117 klgkvlvpvvlliallvflialllgksla...eallralallva 157
                    +++ +  + l++++lvf+ +  lg+++a        al++++a
    KKY16826.1 108 YFFGGFGSILLVASILVFICWKPLGDPPAvanL----ALGIVLA 147
                   4677899999***********999999865320....3333333 PP

  == domain 2  score: 141.8 bits;  conditional E-value: 6.3e-45
                   SS--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S..EEE-TTTS---S-EE-..........G-TTEE-TT-EEEE-EEEEEEE CS
  E1-E2_ATPase   2 llpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsa..evdesaLTGEslpvek..........ekgdmvfsGtvvvsgeakavVt 86 
                   +lp+ + v+rdg++++ida+++vpGD++ +kag++ paD+r +e s+  ++d s+LTGEslp             e+++  ++Gt  +sg+ +a+V+
    KKY16826.1 174 MLPEGTLVLRDGRQQQIDAADVVPGDVLYFKAGNKLPADVRFIEVSSdsKFDRSVLTGESLPLGAttkstdvnylETRCIGMQGTHCTSGSGIAIVV 270
                   57888999************************************99999****************999****9999********************* PP

                   E-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT.......HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHH CS
  E1-E2_ATPase  87 atgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla.......eallralallvaaiPcaLplavplalalgar 176
                    tg  t +g+ia+l+++++ ++tplqk++ +++ ++v +++l+ ++v+++   + k+           ++ +++++va++P++Lp+a++ +l++ a+
    KKY16826.1 271 STGDRTIFGRIAKLTSTPSTARTPLQKEILRFVLIIVSLMVLMNVIVLIVYGAYLKENHpswittpILIIDIVSVAVAFVPEGLPIALTASLTITAK 367
                   ***********************************999999999999988887776666688999666667************************** PP

                   HHHHT CS
  E1-E2_ATPase 177 rlakk 181
                   ++ak+
    KKY16826.1 368 AMAKN 372
                   ***96 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.8
                    T..HHHHH.HHHHHHHHS-TTHHH CS
  E1-E2_ATPase  145 a..eallr.alallvaaiPcaLpl 165 
                    +   a+++ ++ +++   P+   +
    KKY16826.1  991 RliPAIIFaIVIVFIFCYPPSVQA 1014
                    144444441333333334555544 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.63   1.6e+03      55      74 ..     111     130 ..      87     171 .. 0.56
   2 ?   -0.0   0.9      0.24   6.2e+02     128     162 ..     303     335 ..     275     367 .. 0.54
   3 !  116.6   4.6   3.8e-37   9.8e-34       1     181 [.     839    1045 ..     839    1046 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.63
  Cation_ATPase_C  55 liqgllqalvtllvffltll 74 
                      ++ g +++++++lvf+ +  
       KKY16826.1 111 GGFGSILLVASILVFICWKP 130
                      55555555555555544433 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.24
  Cation_ATPase_C 128 lllaillslllqvlivyvpglnavfgtaplsleew 162
                      +l+++ l++l+ v+++ v   +a+++ + +s+   
       KKY16826.1 303 VLIIVSLMVLMNVIVLIV--YGAYLKENHPSWITT 335
                      333333333333333333..455555555555444 PP

  == domain 3  score: 116.6 bits;  conditional E-value: 3.8e-37
  Cation_ATPase_C    1 plplsaiqiLwinLvtDllpalaLaleppekdimkrpPr.kkkepliskkmlrri.liqgllqalvtllvffltll...........lf... 76  
                       p++ls+ ++++i  +tD  +a++La+e+pe+d+m r+Pr  k++ l+++++l  + +++g++ + +++++ +++++           ++   
       KKY16826.1  839 PQILSSFLMIIICCFTDCAAATMLAYEKPEADLMIRKPRnAKRDRLVDWRLLSWSyGFIGIIETTLSFTMSYWYAQrhglpfsalwfGYgav 930 
                       789************************************9*******************************999995666555554422333 PP

  Cation_ATPase_C   77 ..gisekenkls.......snyaqtmaFitlvlsqifnalnlrsrreslfkfsglf........snkllllaillslllqvlivyvpglnav 151 
                         +i                n a++++F+ lv++q+f ++++r+rr s+f+   ++        +n+ l+ ai+++++++++++y p ++av
       KKY16826.1  931 psNI-------TserytevLNTASSIYFVNLVVMQFFTLMAVRTRRLSIFSHPPFWfakagkktQNWRLIPAIIFAIVIVFIFCYPPSVQAV 1015
                       3333.......14456666*******************************966666999998888999************************ PP

  Cation_ATPase_C  152 fgtaplsleewlialllalvvllvdelvKl 181 
                       + t+ +++e+w++ l +++ vl +de +K 
       KKY16826.1 1016 LATTTVPVEHWFLPLSFGVGVLCLDEGRKA 1045
                       ****************************97 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.5   1.8e-12   4.6e-09       3     168 ..     390     673 ..     388     688 .. 0.79
   2 !   29.1   0.0   4.4e-10   1.1e-06     164     210 .]     724     770 ..     709     770 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 1.8e-12
                 EEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHH..HHHHHHHHHETTTE.HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakar..sgaltgfatfigrg.ayaigkpewltaldippdlgaaigsaqsqgr 98 
                 +++ Dk+GTLt+ ++   d++v    +l+a            a+ ++ k+   sga ++ +++         g+ +  t  + p d +  ig+a +q+ 
  KKY16826.1 390 VLLSDKTGTLTKNQMKAADCMVGF-TSLKAKD----------AI-EQIKKDeeSGAFQSLQQLRATAaICNAGEFDVATL-NKPLDDRTIIGDATDQAV 475
                 7899***************99999.2222222..........22.22222224444444444222211333333333333.466777777777777777 PP

                 HHHHH.............................................................................................. CS
                 xxxxx.............................................................................................. RF
   Hydrolase  99 tvall.............................................................................................. 103
                   + +                                                                                              
  KKY16826.1 476 LRFSEslgsvsetknlwrkvfeipfnsknkfmvritaraelknnlgviqalspaeaadfaddsllltikgapdillerctqylgedghvhdlddgirav 574
                 7777788888888888888888888888888888888888888888888888999999999999999999999999*********************** PP

                 ...............................................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHT CS
                 ...............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 104 ...............................................qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanql 155
                                                                    ++++ i dp  +++e+  +v++L+ agi++ ++tgd++ ta+++a q+
  KKY16826.1 575 iegvkdnwsgqgkrvislarkvlpnetveltptdgrfedatmeyaasGLIFVGLVGIVDP--PRDEIPGVVQTLRGAGIKIMMVTGDFKLTAQAIAAQC 671
                 **************************************99998877655889999999**..************************************* PP

                 TGGGESEEEEHHC CS
                 xxxxxxxxxxxxx RF
   Hydrolase 156 Gddyfdaviasdi 168
                 G           i
  KKY16826.1 672 G-----------I 673
                 *...........2 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 4.4e-10
                 EEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 164 iasdietvakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                  +++++++a   p++k+++++e+q + + v m GDgvnDa+ l++A+
  KKY16826.1 724 CGYSEVVFARTTPDQKLRIVKEYQKRENIVGMTGDGVNDAPSLKQAD 770
                 3344555*****************88888*****************8 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   1.2e-19     3e-16       2      90 ..     446     556 ..     445     557 .. 0.95

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 1.2e-19
  Cation_ATPase   2 lcNsaaf...sensekdevkllGnktEsALlvlaeklgldteelreetkkvqeipFnssrKrmsvvlkle....................pekkvr 74 
                    +cN  +f   + n++ d+++++G++t++A l++ e l  +++e ++ + kv+eipFns++K+m+ +                         + +++
     KKY16826.1 446 ICNAGEFdvaTLNKPLDDRTIIGDATDQAVLRFSESL-GSVSETKNLWRKVFEIPFNSKNKFMVRITARAelknnlgviqalspaeaadfADDSLL 540
                    688888888889*************************.9*************************99886689************************ PP

  Cation_ATPase  75 lyvKGApeiilkrCth 90 
                    l++KGAp+i+l+rCt+
     KKY16826.1 541 LTIKGAPDILLERCTQ 556
                    **************97 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   5.9e-14   1.5e-10       1      68 [.      57     123 ..      57     124 .. 0.97

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 5.9e-14
  Cation_ATPase_N   1 ehalsleevlekLetdlenGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalv 68 
                      +h  +l+e++++L t+l++GL+ +++a+  k++G+N+   k++  l +kl+  f   +  +Llva+++
       KKY16826.1  57 WHLIDLSELCTRLSTSLSQGLSIDQVARKTKEFGKNVP-SKPPSRLPQKLFGYFFGGFGSILLVASIL 123
                      99***********************************9.999999********************997 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.4e-06     0.006     195     244 ..     742     791 ..     739     800 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.4e-06
                  HHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE- CS
  Hydrolase_3 195 lakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtk 244
                  ++ke++   + v   GDg ND + L++a++g+A g++s+ + +aAd+v  
   KKY16826.1 742 IVKEYQKRENIVGMTGDGVNDAPSLKQADIGIAPGSGSDIALEAADMVLL 791
                  667778788888889********************************975 PP

>> Dpy19  Q-cell neuroblast polarisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.4      0.72   1.9e+03     109     139 ..     302     332 ..     294     347 .. 0.74
   2 ?   11.9   0.8   1.8e-05     0.047     362     486 ..     825    1013 ..     819    1020 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.72
       Dpy19 109 FYvevVfllqgvtvlvLflystllsesvlgG 139
                 F + +V l+  + v+vL +y+ +l e+  + 
  KKY16826.1 302 FVLIIVSLMVLMNVIVLIVYGAYLKENHPSW 332
                 5556677777778889999999998876554 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.8e-05
       Dpy19  362 etlerlvktlll......plvilvllvllikllksvkkdlkrkklekaklkkeskkeedrfkerpe............................... 421 
                  ++++ +++++l+      + ++++++ +++ + +++   +++    +  ++k +++++dr+    +                               
  KKY16826.1  825 SEFWPVMTSVLFglpqilSSFLMIIICCFTDCAAATMLAYEK-PEADLMIRKPRNAKRDRLV--DWrllswsygfigiiettlsftmsywyaqrhgl 918 
                  677777777777776655666666666677777766666643.2233334444444444444..224566677888888888888888899999999 PP

       Dpy19  422 ...............................vvYhllqllvftllallimrLklLwtphlcviaslvlskklfkfllkkifisavlavlllsmsvk 486 
                                                 +  +l+ + +ftl+a+ ++rL +++ p    +a  +  ++ ++++   if  +++++++  +sv+
  KKY16826.1  919 pfsalwfgygavpsnitserytevlntassiYFVNLVVMQFFTLMAVRTRRLSIFSHPPF-WFAKAGKKTQNWRLIPAIIFAIVIVFIFCYPPSVQ 1013
                  99999999999999999999999999999877779999********************87.68889999999999998777777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.88u 0.39s 00:00:01.27 Elapsed: 00:00:00.54
# Mc/sec: 6437.26
//
Query:       KKY16827.1  [L=372]
Description: putative alkanesulfonate monooxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-69  235.1   0.6    1.6e-69  234.7   0.6    1.0  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.7   0.6   8.9e-74   1.6e-69      10     313 ..      16     329 ..       8     330 .. 0.96

  Alignments for each domain:
  == domain 1  score: 234.7 bits;  conditional E-value: 8.9e-74
  Bac_luciferase  10 rqggalgaasaslrylvelaraaEelGfdavwvaehhggpggaldaftllaalaaaTerirlgtavtplytrhPavlAqqaatLdhlsgGRfglg 104
                     ++++ +ga++ +++ lv++ar ++e+Gf + +++   +     +d+ft+ a ++a+T++i +++a +p +   P+v+A++ atLd+l +GR++++
      KKY16827.1  16 EINPIPGAGA-DPDFLVRYARVLDEYGFNYTLIPYDSSS----FDPFTIGATILAVTKKINVIIALRPNT-LYPTVAAKALATLDQLGRGRVVVH 104
                     4555556666.9**************************9....***************************.************************ PP

  Bac_luciferase 105 lgtggpaveerrfGv..dhderyarlrEfvevlrrlwrgeev.dfeGeffsvkgalllprpgqgpiPvyvaaaspaglelaarhadglllagepp 196
                      ++gg+ +e+++ G+   +++ryarl+E++++lrr+w++ ++ d+eG++++ k++ ++ rp +g iPv v+++s ++ ++ +  ad++ l+gep+
      KKY16827.1 105 FIAGGSDAEQAKEGDflTKEQRYARLEEYIRILRRAWESADPfDWEGDYYQFKQFSNRVRPTNGTIPVSVGGSSADAYRIGGALADIFGLWGEPL 199
                     *************************************998888**************************************************** PP

  Bac_luciferase 197 eeaaelierlragaaeagrdpa.dirvgisltvivadteeeAraearaliagld.............fyaldsegagreaeaaeiqeeedanlwa 277
                     +e +e+i+r+ + a++agr+ + ++r+++ + +i+a+t+e A+a+a++ ++ l              + + +++g++r+ e a ++e +d+ lw 
      KKY16827.1 200 KETKEQIDRIYEEAKKAGRPEGdRPRIWVTFRPIIAETDELAWAKAHRTLDILAenrakgqgkvpanAPPPQNVGSQRLLEIAGRGEVQDRALWY 294
                     *******************9989***********************88887777899*********999************************** PP

  Bac_luciferase 278 gaadavpdelvaatalvGtpeqvaerlaayaeagvd 313
                     +  +a  ++ +a+talvG+pe++ e l +y+++g++
      KKY16827.1 295 PTVTAT-NARGASTALVGSPETIKESLLDYVDLGAE 329
                     *****5.***************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2377.33
//
Query:       KKY16828.1  [L=554]
Description: putative general amino acid permease agp2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.7e-105  352.7  39.1   3.3e-105  352.4  39.1    1.0  1  AA_permease    Amino acid permease
    1.8e-22   79.8  42.2    2.4e-22   79.4  42.2    1.1  1  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
       0.11   12.6   0.0        7.6    6.8   0.0    3.0  3  TFIIF_beta     TFIIF, beta subunit HTH domain


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  352.4  39.1  5.6e-109  3.3e-105       2     473 ..      44     504 ..      43     507 .. 0.98

  Alignments for each domain:
  == domain 1  score: 352.4 bits;  conditional E-value: 5.6e-109
  AA_permease   2 vlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasi 99 
                  v++ia+gg iGt+lfv++g+ l ++Gp+++l+ay++ +  + lv +s++e+a+++p+sg+f  +a + +++++Gf+ G+n++++++t +++e+ta++ 
   KKY16828.1  44 VQLIAIGGSIGTALFVSIGSGLMEGGPGSLLIAYIVYCSLLGLVNNSMAEMAIFMPVSGSFIRMAGKWVDDAFGFMAGWNFFLYEATLIPFEITALNL 141
                  89************************************************************************************************ PP

  AA_permease 100 liqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeeeg 196
                  +++fw   +d+p   ++ a  +v++ +in+++vk+ygeaef+l++ k++ i++++ +++++++gg+p+++a gfr+++++g+ f+++++ g    + g
   KKY16828.1 142 VLTFW--SDDIP-VAAICAACIVLYAVINIFAVKYYGEAEFWLSSGKVLLILIVFSFTFVTMVGGNPQHDAyGFRYWKNPGA-FAEYVTTG----SLG 231
                  *****..*****.9999999**************************************************************.88888888....899 PP

  AA_permease 197 afknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa...aspfvifikesgvsvlapl 291
                  +f +f++++  ++f++ G e+va++agE++ P+  ++ a++ + +r ++f+++++l++g+++p+nd++l++ s s+   asp+vi++++ gv+vl+++
   KKY16828.1 232 RFEGFLGALWSAAFTIVGPEYVAMVAGETERPRTYLKTAFKTMYWRFGFFFIGGALAVGIILPYNDPTLTENSGSGtasASPYVIAMNNMGVAVLPHI 329
                  ***********************************************************************99999********************** PP

  AA_permease 292 inaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylr 389
                   na++ t+++s++n+++y+a R ly la +g aP++lkk++++g P+   +++m++ ll++l  s  ++  +v ++l +++ +++li +++++++yl 
   KKY16828.1 330 TNALLVTSIFSAGNAYTYCAMRSLYGLALEGQAPAFLKKCTRSGIPVYCFIVTMFFPLLSFLQVSNGTG--QVVTWLANLTEAAQLIDYIIMSVTYLF 425
                  *********************************************************************..*************************** PP

  AA_permease 390 fRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknk 473
                  f +alk+qg +   l+++ +++p+  +++ + ++ ++  ++++ +l+     + w++++f++ y + ++ ++ + g+k+ +k+k
   KKY16828.1 426 FYRALKVQGFDRHTLPYRGWFQPYCGYIGAVGMLVVVGCYGYTTFLP-----GWWDVGTFFSYYTMCFVAILTYSGWKILKKTK 504
                  ***********************************************.....9**************************99987 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4  42.2     4e-26   2.4e-22       4     420 ..      42     488 ..      39     494 .. 0.77

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 4e-26
  AA_permease_2   4 lsafalvigsvigsgifvkn....laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasi 95 
                    +++ +++ig  ig++ fv+     + + +g +li +++  +l+g   v   +aE++  +p sg  +  + +     ++f+++w  +f y ++l   
     KKY16828.1  42 RQVQLIAIGGSIGTALFVSIgsglMEGGPGSLLIAYIVYCSLLG--LVNNSMAEMAIFMPVSGSFIRMAGKWVDDAFGFMAGWN-FFLYEATLIPF 134
                    678899***********996665333446666666666666666..688999***999********999999999888998885.56777777666 PP

  AA_permease_2  96 lsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.....stetdt..... 181
                     + a++  l++++      ++++  i +a+++l a+ini+++k ++ + ++l   k+ll+li++  + + +v+g+ ++++     +   ++     
     KKY16828.1 135 EITALNLVLTFWSD-----DIPVAAICAACIVLYAVINIFAVKYYGEAEFWLSSGKVLLILIVFSFTFVTMVGGNPQHDAygfryW---KNpgafa 222
                    67777777887863.....5699**********************************99999999999999999999988995541...4444322 PP

  AA_permease_2 182 .ffpngwpgv....llgllivlwsfdGfesaanvseevkk.kdvpkaif.igllivlvlyllvniaflgvvpddei..anlsnlgsv....aalff 264
                      +++g+ g     l++l  ++++++G e++a v+ e ++ +++ k++f  +    ++++++ ++a+ +++p +    +++s++g++    + + +
     KKY16828.1 223 eYVTTGSLGRfegfLGALWSAAFTIVGPEYVAMVAGETERpRTYLKTAFkTMYWRFGFFFIGGALAVGIILPYNDPtlTENSGSGTAsaspYVIAM 318
                    244445554322225566669999*************7766664444441333444555555666666666655551255555443244449999* PP

  AA_permease_2 265 eavggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslglii 360
                    +++g  v+ +i ++l++ s++ a+n++++ ++r l+ la +g  P f++k  + g+p+++ i+t+ + l+ +l ++ +++  +++l++++  + +i
     KKY16828.1 319 NNMGVAVLPHITNALLVTSIFSAGNAYTYCAMRSLYGLALEGQAPAFLKKCTRSGIPVYCFIVTMFFPLLSFLQVSNGTGQVVTWLANLTEAAQLI 414
                    ********************************************************************88887777666***************** PP

  AA_permease_2 361 syllliigalilrkkrphl..kr.......pgkilvaiigalfllfll....valffppkgpatqssliyt.ii 420
                     y+++++++l+ ++  +++   r       +  +  + iga++ l+++    +++f+p+   + ++ ++yt ++
     KKY16828.1 415 DYIIMSVTYLFFYRALKVQgfDRhtlpyrgWFQPYCGYIGAVGMLVVVgcygYTTFLPGWWDVGTFFSYYTmCF 488
                    *****999999999989886644678544444467888888888888777778888887666666666666433 PP

>> TFIIF_beta  TFIIF, beta subunit HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.31   1.8e+03      30      40 ..     259     269 ..     253     276 .. 0.83
   2 ?    1.7   0.0      0.05     3e+02       8      41 ..     334     369 ..     329     374 .. 0.82
   3 ?    6.8   0.0    0.0013       7.6      31      55 ..     528     552 ..     493     554 .] 0.86

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.31
  TFIIF_beta  30 etrqPeayLke 40 
                 et++P +yLk 
  KKY16828.1 259 ETERPRTYLKT 269
                 6999*****96 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.05
  TFIIF_beta   8 lldalfelFeeyqYWslkdLkae..trqPeayLkev 41 
                 l++ +f++ + y+Y ++++L       q+ a+Lk +
  KKY16828.1 334 LVTSIFSAGNAYTYCAMRSLYGLalEGQAPAFLKKC 369
                 6789999999*********97554378999999976 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0013
  TFIIF_beta  31 trqPeayLkevLeeIAvlhrsGpfk 55 
                 t+ Pe + kevL+ ++  +++ +f+
  KKY16828.1 528 TKTPEGFWKEVLQMVGLRKKTSEFA 552
                 899*************999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3679.63
//
Query:       KKY16829.1  [L=532]
Description: putative aldehyde dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-14   52.9   0.0    2.1e-13   49.6   0.0    2.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   1.2e-17   2.1e-13      53     399 ..      62     383 ..      35     414 .. 0.85

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 1.2e-17
                 HHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH.HHHHHHHHSE.EEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHH CS
      Aldedh  53 RaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlry.yaelaekleg.evlpssegklalvrrePlGvvgaItPWNfPlllaawklap 149
                  ++ L+ ++d l++++ e+ e+++++tG + +e + e   ++d+++  y +l ++ +  e  ++++g ++ ++re++G+  ++ +    l+ ++  l +
  KKY16829.1  62 IQNQLKGLHDELTSNAAEIREAISKDTGNSSSEIDIEFVLTLDCVKNeYLSLNTDNSLqEEYSIANGINCPSHREAVGIAYIVPADHSLLFSVIAPLTA 160
                 56778999***********************************99751444444433324445579************876655555556667889*** PP

                 HHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTS CS
      Aldedh 150 alaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivleda 248
                 a++aGN+vv+   ++ +++ ++l +++    l+++ ++vv  +         ++pe+    f  s +v +  aka +  lk ++    +k  +iv   a
  KKY16829.1 161 AIVAGNCVVVELGKTLSAVNAVLRKILST-ALDSETFTVVDSRP--------NDPEF----FDSSIQVFQTTAKAPGPALKTLQSPALAKVVAIVDRTA 246
                 ****************************9.5*********7744........45654....8899**********9999******************** PP

                 HHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTS.EEEE-TTE.SB-SS CS
      Aldedh 249 DldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgdpldedtdvGPliseaqlekvekyveeakeega.klllGgereeagle 346
                 ++++a++ +v++ f + G   +a+  +lv+e  ++ef ++l+++ +k     +   + +v  l +++++ + + ++e+a++e+a ++l+ g        
  KKY16829.1 247 NIEHAAKTLVRARFAFGGKSPYAPDIILVNEFRTKEFSNALLQQSTKYFAERS---NGHVKGLSKQKKRPEQKHFLEKARSEEAcDVLVSG-------- 334
                 *********************************************99977555...678888*****************998872455566........ PP

                 STTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEE CS
      Aldedh 347 kgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaa 399
                      +  +++  t+d++i++  i  P+l+  +++++++ i+  N+++  L a
  KKY16829.1 335 ----DRASIVQARTRDADILKRKINEPLLVFHSISSLDDGIDFSNSSDQPLLA 383
                 ....256899999*********************************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3973.83
//
Query:       KKY16830.1  [L=123]
Description: hypothetical protein UCRPC4_g05788 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.48
# Mc/sec: 778.12
//
Query:       KKY16831.1  [L=195]
Description: putative cupin domain containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-09   37.3   0.0    2.3e-09   36.8   0.0    1.3  1  Cupin_2   Cupin domain


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   1.3e-13   2.3e-09       2      69 ..      99     166 ..      98     168 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.3e-13
                 EEEEETTEEEEEECSSSEEEEEEEEESEEEEEEC.TEEEEEETTEEEEE-TT-EEEEEE-SSS.-EEEEE CS
     Cupin_2   2 lvelppGesapshrHpgedeffyVleGegeltvd.geeveleaGdsvyfpagtpHrfrNtgde.parllv 69 
                 +v ++pG+++p+hr      +++VleGe+e ++d ge+  l++Gd+ ++ +gt H++rN +++  ar+l 
  KKY16831.1  99 YVDIAPGATSPMHRTISL-DYGVVLEGEVESILDsGEKRLLKRGDI-LIQRGTNHAWRNVSETsWARMLY 166
                 689***********9999.*************88799********5.689***********987777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1339.76
//
Query:       KKY16832.1  [L=1331]
Description: putative x-pro dipeptidyl-peptidase (s15 family) protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-46  158.3   0.1    4.5e-46  157.6   0.1    1.3  1  PepX_C          X-Pro dipeptidyl-peptidase C-terminal non-cat
    1.9e-40  139.2   0.5      3e-40  138.5   0.5    1.3  1  Peptidase_S15   X-Pro dipeptidyl-peptidase (S15 family)
    5.2e-22   78.5   0.0    8.6e-22   77.8   0.0    1.4  1  FAD_binding_3   FAD binding domain
    4.2e-10   39.6   0.0    9.9e-10   38.4   0.0    1.6  1  ADC             Acetoacetate decarboxylase (ADC)
    9.8e-06   25.7   0.3    2.7e-05   24.3   0.3    1.8  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0005   19.3   0.6    0.00078   18.6   0.6    1.2  1  FAD_binding_2   FAD binding domain
     0.0014   17.9   1.2     0.0087   15.3   1.2    1.9  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.028   13.3   0.3       0.18   10.6   0.1    2.3  3  Trp_halogenase  Tryptophan halogenase
       0.05   12.9   0.1       0.14   11.4   0.0    1.7  2  Hydrolase_4     Serine aminopeptidase, S33
      0.067   12.2   0.0       0.15   11.1   0.0    1.5  1  SE              Squalene epoxidase
      0.092   12.1   1.3       0.12   11.7   0.1    1.7  2  FAD_oxidored    FAD dependent oxidoreductase
      0.099   12.2   0.2       0.23   11.0   0.2    1.6  1  DAO             FAD dependent oxidoreductase
       0.18   10.5   0.1       0.29    9.8   0.1    1.2  1  HI0933_like     HI0933-like protein
       0.18   11.3   0.1       0.35   10.3   0.1    1.4  1  RecT            RecT family
       0.86    8.6   3.7        0.3   10.1   0.7    1.7  2  GIDA            Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> PepX_C  X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.6   0.1   3.8e-49   4.5e-46       7     225 ..     340     587 ..     337     588 .. 0.96

  Alignments for each domain:
  == domain 1  score: 157.6 bits;  conditional E-value: 3.8e-49
      PepX_C   7 ppvrlqvldggsgs.........twrtedawpspntkattlylsqrgagstgdgtlsaasplsdeaaaseedlydptnpldqdqreeradslafttapl 96 
                 ppv++ +++g  g          ++rte +wp ++t++t +yl+       +++ l++++p s++++   ++ +++          e+++  +ftt+++
  KKY16832.1 340 PPVDILLRKGDVGHnnaereqtfQRRTEMEWPIARTQYTPFYLT-------PERVLTTTKPESSDLQKLTYKGLGS---------LENPQLIQFTTPAF 422
                 89999999999988999999999*********************.......****************999999999.........************** PP

      PepX_C  97 aedtelvGapkakLrvssdap.........dadlsvtLvdvdpdGea..........tlitkGwlrlsnRasdeep.................eplePG 159
                 +e+te++G++ a+L+ s  +          d+dl++tL++++p G++          ++++kGwlr+s+R++++e+                 +p+ PG
  KKY16832.1 423 TEETEITGHITAHLNISLGQTnpdpklvpsDIDLFLTLRHISPEGKEvfytgtagdpVPLCKGWLRVSMRKINKEHrrhrpwlpqrdyfstdrLPVIPG 521
                 *****************99999999****999************7777777777888****************************************** PP

      PepX_C 160 evydleieLqptayrfpkGhrlrlsvsssdfpmilpnpetdtltldlaklkakntvhtgaerpssl 225
                 evy++++e +pt++++++G +l l+v+s+d+++ +++ +t +++++++k+++ n++h+g e+ +++
  KKY16832.1 522 EVYPVDVEVWPTNVVVSPGGKLILEVASGDTQGCDRFKHTSPTDRSPEKFEGVNHIHFGREYYNYV 587
                 **************************************************************9998 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.5   0.5   2.5e-43     3e-40       4     253 ..      34     290 ..      30     304 .. 0.79

  Alignments for each domain:
  == domain 1  score: 138.5 bits;  conditional E-value: 2.5e-43
                    EEEEEEEEE..TTSSSEEEEEEEESS-CCT.CCCCHTTCHHCCHGGGHH............HHHTT-EEEEEE-TTSTTS-S---TTTTTHHHHHH CS
  Peptidase_S15   4 rLavdiyrPetkskeklPvlltrtPYgkndelasdkalaleelelqdkv............fvarGYavVvqdvrGtggSeGeftvgdsdeaedga 87 
                    ++  ++yrP  k ++k+Pvl t+ PYgk+ + ++ + ++  el+ ++k             + + GYa+V +d rG g+S G+ +++++   e+++
     KKY16832.1  34 LIRCNVYRP--KAEGKYPVLCTYGPYGKDIPYKDFHPQSFSELNPEHKSehsawetpdpgyWTKYGYAIVRADERGLGQSPGFLDTMSRGTSEAFV 127
                    6899*****..****************666555555555555555555567779****************************************** PP

                    HHHHHHHHCTTEEEEEEEEEECHHHHHHHHHCTT--TTEEEEEEECE-S-TCCCCSECTTEEBCCHHHHHHHHHCCCCHHTSSS-STTHHHHHHHH CS
  Peptidase_S15  88 dvidWlakqpwsnGkVgmtGiSYlGttqllaaatgvpalkaivpeaaisdlyddyyregGlvrapgglswedldllaealtsrradegdalkaaar 183
                    dv++W+a qpws+GkVg +G+SY G  q+ +aa+++++l+a++p  ++sd y+d  r+gG++  +++  w d ++++++  ++ ++++ ++  +  
     KKY16832.1 128 DVVEWAADQPWSSGKVGLLGVSYFGGSQWRVAARQPRGLAAMIPWEGMSDYYRDRCRHGGILSNEFIRFWWDRQVGSNQYGRPGRAAR-KWGPDTI 222
                    **********************************************************************898888876665555555.5555555 PP

                    HHCHCCCCCCTTHHHTHHHHCCCC--SSSHHHHTT-HHHHHCT--S-EEEEEECCSSTTC.CHHHHHHHHH CS
  Peptidase_S15 184 yeaasdellaeldrqtpveselletgdydafWkdrnlsedadkvkapvllvgGwnDwnvk.ngaiklyeal 253
                       +s+e +++  ++   ++++ +  + +a+  +r+++  ++ +k+p+l+v  w       +g+++ y ++
     KKY16832.1 223 EGDLSEEEMEKNRAD-QNIDNANNYYRDQAYYASREYD--MEDIKVPLLSVANWGGILLHlRGNVEGYTHA 290
                    455555555555554.2344555555556666666666..6*************87444456666666655 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0   7.2e-25   8.6e-22       3     347 ..     646    1001 ..     644    1003 .. 0.74

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 7.2e-25
                     EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHH...CH CS
  FAD_binding_3    3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdtpkaradle...le 93  
                     ++lI GaG+ Gl++a  L+++G +v + e+ + +++l+ a  l +    +lr lG++++       ++l ++  +++       +adl+    +
     KKY16832.1  646 KILIAGAGLGGLTAAIALRKQGHEVEIYEQSRFASELGAAVHLAPNANGVLRRLGIWAEDFGSNPMSSLLEFSSSGK----VLKEADLTepnKL 735 
                     689*****************************************************987544443445445555555....4666666633223 PP

                     HCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGG.EEEEEEE.EEE CS
  FAD_binding_3   94 sspervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgie.fegeetv.yea 185 
                      +++   +  ++  +++ + +   +g  v  k +++s   d + v+a+++ ++ g +  ++ + +vGaDG++S +r++++   ++ +++    +
     KKY16832.1  736 WQHPWLLAHRVHLHDKLKRTAFDPEGDGVPAKLNLQSRITDVDPVAATITLEN-GDK--ITGDLVVGADGVHSVTRRKVPGAdVKPFGSGkSAF 826 
                     3333334444444444444555556677888889***************9985.554..8******************9755455433220233 PP

                     EEE...EEEEEC.-SCCCTTC...CEEEEECCTTEEEEEECCE.TEEEEEEEEECCE-GGGS.....CCCHHHHHHHHHHHHHHTTSSCEEEEE CS
  FAD_binding_3  186 gvl...dvlfda.dlsdivep...lvlilsaesrgvmviPlen.tlerfyvqvearaekeer.....sekfteeevkarlreivgektldveie 266 
                     ++l   +v  ++ ++s++v++   l++ + ++ r v v P+ n +l +f+ + + +++++++      +  +  ev ++ ++ +     +++++
     KKY16832.1  827 RFLvprNVALEDpKVSHLVQKhsqLTMWYGKDRR-VVVYPTTNnELLNFVCIHPEKESEAGDdwnntGNLGKMLEVYKDFPQDMLALLSKADPQ 919 
                     3332336666666777777767863444444444.37888888677777766665555544423322334445688888889999999999*** PP

                     EEEEEEEEEE.EESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHH CS
  FAD_binding_3  267 evsawtvaqr.vaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvd 347 
                       ++w++ ++ v  +++++++ l GDAaH   P +GqG  +a++Da  L   L +    e   ++L+ Ye+ r ++a+++ +
     KKY16832.1  920 TLKVWKLLDMeVIPHWTHEKLVLLGDAAHPFLPHQGQGAGVAMEDAAALSVVLPKDTLKEDIMDRLKLYEQIRYERANKIQQ 1001
                     ******87653899***************************************987666999999*********99998765 PP

>> ADC  Acetoacetate decarboxylase (ADC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   8.3e-13   9.9e-10      17     167 ..    1071    1243 ..    1052    1253 .. 0.80

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 8.3e-13
                  E......EEEEEEEEEEE-HHHHHTTSBTTEEECS.TSEEEEEEEEEEEECTTTC......EEEEEEEEEE.EEETTE.....EEEEEEEEEESSHH CS
         ADC   17 y......naealtvsyrtdpeaaaallPepLelae.rplvavyfaeypdssfggg......qYneagivvp.vryggk.....egayilvlwvdkea 94  
                         + ++ ++ ++t++  ++ l P++ +  + +  ++v +a ++ ++++         Yn +g++++ v+y+ +     +g+y + l+ + + 
  KKY16832.1 1071 IrqaehsTFTTASIKFKTSRTILQNLFPPGRRGYRfKSPGTVAYASISQTTLNKMewlggsGYNHLGLYIHgVEYEKAdgtimNGTYMPILFESLTD 1167
                  1445555778889999*************9888888444455555555555444355778**********95669977788877************* PP

                  HHHHHHHHTT--EEE-EEEEEEETTEEEEEEEETTEEEEEEEEEEEEEE-HHHHHHHHHTS...EEEEEEEEE-TT CS
         ADC   95 alaaGRElwGfPKklAditltregdtlggtverggkrlaeltvelkerapddeealpslka...ptfllkiipsvd 167 
                  ++++GRE +G+PK + +i++ r +d    +  ++g++  e+++e  e+ ++ +e +    +    +f +++ip+v+
  KKY16832.1 1168 PIVSGREELGMPKLYSSIEIFRRSDAYYIKTGWQGATWGEFKLEGLEPFDPTQEGGNVSGEnddGIFVHRYIPAVG 1243
                  *************************************************8887777766669999********976 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.3   2.2e-08   2.7e-05       1      28 [.     649     676 ..     649     695 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.2e-08
                    EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekr 28 
                    I GaGl+Gl+aA +L+k+g++v+++e++
     KKY16832.1 649 IAGAGLGGLTAAIALRKQGHEVEIYEQS 676
                    67************************96 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.6   6.5e-07   0.00078       2      32 ..     647     677 ..     646     690 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 6.5e-07
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSS CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeq 32 
                    +++ G+Gl+GL+AA++++++G++v + e+  
     KKY16832.1 647 ILIAGAGLGGLTAAIALRKQGHEVEIYEQSR 677
                    79**********************9999875 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.2   7.3e-06    0.0087       2     119 ..     646     814 ..     645     830 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.3e-06
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE......TTHCHHHCSHHHHCHHHHHHHHHHHHH.................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxx.................................... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve......legtclnggcllskallgvaedaeias.................................... 57 
                  ++++ G+G +Gl+aa+ l+++g++v ++e      +    l+  + l++ + gv ++  i +                                    
   KKY16832.1 646 KILIAGAGLGGLTAAIALRKQGHEVEIYEqsrfasE----LGAAVHLAPNANGVLRRLGIWAedfgsnpmssllefsssgkvlkeadltepnklwqhp 739
                  68999***********************64433331....2222222333333333333333555666777778888888888888888888888888 PP

                  ...................HHHHCHHHH..CCCCHCCTCEEEEESCEEEEETEEECTCEEEEEESEEEE---EEE-BC.TCTTC CS
                  ...................xxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
  Pyr_redox_2  58 ...................evvkklnqg..ielllgeevvkidpgkkkvklekkkegdeekiaydklvlAtGssprdl.gipGv 119
                                           + g   +l l++ ++++dp +++++l     +++ ki+ d +v A G ++ +  ++pG+
   KKY16832.1 740 wllahrvhlhdklkrtafdP----EGDGvpAKLNLQSRITDVDPVAATITL-----ENGDKITGDLVVGADGVHSVTRrKVPGA 814
                  88888888887777754441....333322344455558888888888888.....4455788888888888755555577776 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00015      0.18       1      63 [.     646     706 ..     646     711 .. 0.81
   2 ?   -1.5   0.0       0.7   8.4e+02     188     214 ..     782     808 ..     769     819 .. 0.81
   3 ?   -1.7   0.0       0.8   9.6e+02     321     364 ..     943     986 ..     935    1018 .. 0.47

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
                     EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS---SS-E..E--THHHHTHHHHT--HHHH CS
  Trp_halogenase   1 kivivGGGtaGwlaAaalakalkgklevtlveseeigtvgvGe..atipsirkllrlLgideeef 63 
                     ki+i+G+G  G +aA+al+k++   +ev++ e++ +   + G    + p+ + +lr+Lgi  e+f
      KKY16832.1 646 KILIAGAGLGGLTAAIALRKQG---HEVEIYEQSRFAS-ELGAavHLAPNANGVLRRLGIWAEDF 706
                     79********************...8899999888753.44541156788888999999977766 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.7
                     EEEEETTS-EEE-SEEEE-SGGG-III CS
  Trp_halogenase 188 eslrledgreveadlfiDcsGfrglli 214
                     + ++le+g ++ +dl++ + G  +   
      KKY16832.1 782 ATITLENGDKITGDLVVGADGVHSVTR 808
                     67899****************998765 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.8
                     -CCCTEE--CCCS-HHHHHHHHHHHHHHT--BTT--HHHHHHHH CS
  Trp_halogenase 321 lGlasgfvePlestsihliqaalrrLlallpdksdepaaiaefn 364
                     lG+a+    P ++++  ++++++  L  +lp++  ++  +++  
      KKY16832.1 943 LGDAAHPFLPHQGQGAGVAMEDAAALSVVLPKDTLKEDIMDRLK 986
                     55555555555555555555555555555555554443333322 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012      0.14      25     105 ..      91     170 ..      80     200 .. 0.83
   2 ?   -2.6   0.0       2.2   2.6e+03      73      99 ..     642     668 ..     636     672 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
  Hydrolase_4  25 eaLaaqGfavyalDhrGhGrseg.krghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvagli 105
                   ++++ G+a++  D rG G+s+g      + +++   D+ +   ++ ++++  ++ llG S  G    ++++r+p+ +a++i
   KKY16832.1  91 GYWTKYGYAIVRADERGLGQSPGfLDTMSRGTSEAFVDVVEW--AADQPWSSGKVGLLGVSYFGGSQWRVAARQPRGLAAMI 170
                  578999***************962344667788888888777..46788888899999999999999999999999888887 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.2
  Hydrolase_4  73 hpelplfllGhSmGGliallyllrypd 99 
                   ++l++ + G  +GGl+a+ +l ++ +
   KKY16832.1 642 PKGLKILIAGAGLGGLTAAIALRKQGH 668
                  3456999************99987766 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012      0.15       4     180 ..     796     991 ..     793    1001 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
          SE   4 ltvvcDGifsklRkels.dnkv...evtssfvGlvlknaelpkknkghvi.......l..gkpspvllYqisstetRilveikskklPs.....iange 84 
                 l v +DG++s  R+++   ++    + +s f  lv +n  l++++ +h++       +  gk   v++Y+ + +e    v i+ +k  +     +++g+
  KKY16832.1 796 LVVGADGVHSVTRRKVPgADVKpfgSGKSAFRFLVPRNVALEDPKVSHLVqkhsqltMwyGKDRRVVVYPTTNNELLNFVCIHPEKESEagddwNNTGN 894
                 667788888888888864222211144667777777777777776666662222211222555667888888888776666666655541111123455 PP

          SE  85 lkeylkeevaPqlPkelrksfkkaleegklrsmpnkflpaskn.ekkGlillGDalnmRHPltggGmtvalnDivllskllkpl...edlsdeekvlee 179
                 l + l  ev+   P+++   ++ka + ++l++ +   ++   + +++ l+llGDa     P  g G  va++D++ ls +l +    ed+ d+ k+ e+
  KKY16832.1 895 LGKML--EVYKDFPQDMLALLSKA-DPQTLKVWKLLDMEVIPHwTHEKLVLLGDAAHPFLPHQGQGAGVAMEDAAALSVVLPKDtlkEDIMDRLKLYEQ 990
                 55555..58889999999888887.455555555555554443145679****************************9998654356777777777776 PP

          SE 180 l 180
                 +
  KKY16832.1 991 I 991
                 6 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       2.6   3.1e+03     153     267 ..     147     257 ..     145     266 .. 0.56
   2 ?   11.7   0.1    0.0001      0.12       2      33 ..     647     678 ..     646     679 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.6
  FAD_oxidored 153 GvpyrvGresreetgepaagtlmfrlegveggeedekvqaynkrlcltskpenrvpfekkpegydparyel...arvfeaklskgklpgektdvnwp 246
                   Gv+y  G ++r    +p   ++m ++eg+     ++ +++ +++  + s+++ r+ + ++ ++ +  r +    +++    +++g l+ e +  n  
    KKY16832.1 147 GVSYFGGSQWRVAARQPRGLAAMIPWEGM-----SDYYRDRCRHGGILSNEFIRFWWDRQVGSNQYGRPGRaarKWGP--DTIEGDLSEEEMEKNRA 236
                   77777777777777777555556677777.....55566566666666666666666433222222222223122222..33555555555555554 PP

  FAD_oxidored 247 rvstdlienldlpeaeyegre 267
                    +++d ++n+ +++a y++re
    KKY16832.1 237 DQNIDNANNYYRDQAYYASRE 257
                   466777777777777777776 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.0001
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergv 33 
                   +++ G+g++G++AAia  ++G +v + e++++
    KKY16832.1 647 ILIAGAGLGGLTAAIALRKQGHEVEIYEQSRF 678
                   89**********************99998775 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2    0.0002      0.23       1      36 [.     646     684 ..     646     709 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0002
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTS.SG CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiags.ga 36 
                 +++i G+G  Gl++A +L ++g  V ++e++++a++ ga
  KKY16832.1 646 KILIAGAGLGGLTAAIALRKQGheVEIYEQSRFASElGA 684
                 599***************99999********88775455 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00024      0.29       2      32 ..     646     676 ..     645     683 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00024
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVllleka 32 
                  ++++ G+G  Gl aAi+++k+g++V ++e+ 
   KKY16832.1 646 KILIAGAGLGGLTAAIALRKQGHEVEIYEQS 676
                  68999************************87 PP

>> RecT  RecT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00029      0.35     169     192 ..     212     235 ..     211     244 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00029
        RecT 169 qalrkalplsiegaytedElreee 192
                 +a+rk++p++ieg ++e+E+++ +
  KKY16832.1 212 RAARKWGPDTIEGDLSEEEMEKNR 235
                 89******************3322 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       1.4   1.7e+03     367     388 ..     607     628 ..     607     630 .. 0.90
   2 ?   10.1   0.7   0.00025       0.3       2      30 ..     647     675 ..     646     696 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.4
                 B-SHHHHHHHHHHHHHHHHHHH CS
        GIDA 367 teGYeEaaaqGllAGinaarka 388
                 t GY+E a+ G+ ++ n++ +a
  KKY16832.1 607 TMGYVEPAGLGVSSASNVNGHA 628
                 67***************99876 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00025
                 EEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLith 30 
                 + + G+G+ G+ AA+a+ + G++v ++ +
  KKY16832.1 647 ILIAGAGLGGLTAAIALRKQGHEVEIYEQ 675
                 7899*********************9944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.95u 0.28s 00:00:01.23 Elapsed: 00:00:00.47
# Mc/sec: 8430.24
//
Query:       KKY16833.1  [L=471]
Description: putative fad binding domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-28   98.8   0.9    2.6e-28   98.5   0.1    1.5  2  FAD_binding_4  FAD binding domain
  ------ inclusion threshold ------
      0.028   14.5   0.1      0.057   13.5   0.1    1.4  1  BBE            Berberine and berberine like


Domain annotation for each model (and alignments):
>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   0.1   2.8e-32   2.6e-28       1     138 [.      43     177 ..      43     178 .. 0.98
   2 ?   -4.1   0.0       1.4   1.2e+04       8      23 ..     270     285 ..     267     286 .. 0.85

  Alignments for each domain:
  == domain 1  score: 98.5 bits;  conditional E-value: 2.8e-32
                    EEEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTCSCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTC CS
  FAD_binding_4   1 paavvrpeseeevaaalrlaneaglpvlvrGgGssllgqavatggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgi 96 
                    p avv+++ ee+++ a+rla+  g +v vr+gG+s++  +v+++++++dl +++r +++d e++ ++v + + +++l+  l ++gl+++   g++ 
     KKY16833.1  43 PIAVVEATCEEHIVQAVRLASTLGCRVSVRSGGHSWAAWSVRENAILIDLGKYQR-IDVDYEKRLVVVSPSTEGKQLNSLLIENGLMFR--GGHCP 135
                    679**********************************99999*************.8********************************..***** PP

                    GSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4  97 pgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrl 138
                    ++++GG+++++++G+++  +G  ++ v+  +vv+a+Ge +++
     KKY16833.1 136 DVGLGGFLLQGGMGWNCKNKGWACERVKAIDVVTATGEFLHC 177
                    ***************************************998 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 1.4
                    SSHHHHHHHHHHHHHC CS
  FAD_binding_4   8 eseeevaaalrlanea 23 
                    ++eee a+al+lan++
     KKY16833.1 270 QTEEESAKALELANST 285
                    6899999***999975 PP

>> BBE  Berberine and berberine like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   6.4e-06     0.057       7      36 ..     412     441 ..     408     442 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.4e-06
                 -GGG-HHHHHHHHG.GGHHHHHHHHHHH-TT CS
         BBE   7 dldlgkewgerYFg.gNferLvkvKtkyDPd 36 
                 d d + ++ +r+++ +N +rL+ +++k+DP+
  KKY16833.1 412 DSDFQ-VRRTRFWSdENGKRLMALRRKWDPK 441
                 77888.999*****99**************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2897.33
//
Query:       KKY16834.1  [L=566]
Description: putative mfs transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-33  114.4  27.2    5.3e-33  114.4  27.2    2.2  2  MFS_1     Major Facilitator Superfamily
      1e-09   37.8  13.4      1e-09   37.8  13.4    2.8  3  Sugar_tr  Sugar (and other) transporter
     0.0023   16.5   6.6     0.0038   15.7   6.6    1.3  1  TRI12     Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4  27.2   8.8e-37   5.3e-33       3     324 ..      83     472 ..      79     489 .. 0.82
   2 ?   -0.6   4.6     0.084     5e+02     133     172 ..     498     536 ..     486     552 .. 0.67

  Alignments for each domain:
  == domain 1  score: 114.4 bits;  conditional E-value: 8.8e-37
       MFS_1   3 laaflsalarsilgpalpl.alaed........lgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlr 92 
                 ++a+++ +++ ++gp++ +  ++e+        + ++ s + + +t+ al +++++l++++l+ ++Grr+v+l +++l+a+++++  +a+++   + +r
  KKY16834.1  83 VCAAMVLCNFLAAGPTVAIvSITESffgppgplFSSQISKVAFFFTTTALMQGISNLIWMPLIIKYGRRPVYLSSFTLYAATSIWSGVAQTYASEISAR 181
                 5666666777777777777788888666666666688999******************************************444444455559***** PP

       MFS_1  93 vlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee... 188
                 +++Gl++ga+  ++   iad+f   erg ++++++a+ s+G+ +g +++gl++ + +Wr+++y+++++   + vl+++ +pe+   + + s ++     
  KKY16834.1 182 IIMGLASGAGECLAPLTIADIFFLHERGAVMACYTAALSCGVSFGIIIAGLITINHSWRYIYYVATALIGGLTVLVFFTMPET---SYNRSAVPVPtdl 277
                 **************************************************************************644444333...3333333333335 PP

       MFS_1 189 ................................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlg 239
                                                                 ++ ++  ++p   +l+++p lw+ l+++++++f +++ + +   +   +++
  KKY16834.1 278 hspskafgkdveieqtsntsqveagqghipakrsyiqslslyngkltnESLARLFIRP-VMLLVAPPILWATLVMSVTIGFLVAISSNFASAF-SATYN 374
                 7778888889999999999999999999999888888888888877766666666666.9999999999*99999999999999999999998.***** PP

       MFS_1 240 lsglllaglllallalvgailallagrlsdr............lgrrrrlllallllllaalglallavtssavllllvlvl.iGf.glgfvfpsllal 324
                 +  ++++gl +  + l+++i+ +++g +sd               +++rl    ++++++ lgl+l ++  +  l+++v  l +Gf  +++++++  +l
  KKY16834.1 375 FE-AWQSGLCFISGLLGSLIGIFFGGHISDWvaniftkrnggiREPEFRLPAVTIGMIASPLGLLLYGFGIEDKLHWMVPTLgLGFlSFAIAQATNVTL 472
                 **.89999999999999999999********888887777777777************************55555555444447777777775555444 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.084
       MFS_1 133 GailgpllggllasslgWravfyilaivsllafvlfllll 172
                 G++l     +++  ++g+  +f ++a++s+ +++l++ l+
  KKY16834.1 498 GFLLSFYTNPWID-AAGYKNAFGAMAGISAGVLILWIPLF 536
                 4444444444444.66678888888888888877655444 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8  13.4   1.7e-13     1e-09      51     194 ..     126     264 ..     117     269 .. 0.85
   2 !    5.9   1.1   0.00081       4.9      17      73 ..     349     405 ..     341     410 .. 0.73
   3 ?   -3.5   1.5      0.59   3.6e+03     139     179 ..     487     527 ..     426     538 .. 0.64

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.7e-13
                 HHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHH CS
    Sugar_tr  51 ivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitf 149
                 ++  + + + i+ l+ ++l+ ++GR++++l + +l+ + ++ +++a+   ++   i +R+++G++ G+  +l+P++i+ i   + Rga++ +y  a++ 
  KKY16834.1 126 FFTTTALMQGISNLIWMPLIIKYGRRPVYLSSFTLYAATSIWSGVAQ---TYASEISARIIMGLASGAGECLAPLTIADIFFLHERGAVMACYTAALSC 221
                 555666667789999********************************...99*********************************************** PP

                 HHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS--- CS
    Sugar_tr 150 GilvaaifglglnktsnadgwrillglqlvpallllilllflPES 194
                 G  +++i+  gl +++ ++++ + ++ +l+   l +++++++PE+
  KKY16834.1 222 GVSFGIIIA-GLITINHSWRYIYYVATALI-GGLTVLVFFTMPET 264
                 *****9986.55666664555555555555.55888888999998 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.00081
                 HCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHT CS
    Sugar_tr  17 gvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrf 73 
                  v+++++ +l +++ +++s  +++++  + +sgl++ + l+G++iG +f+g ++d++
  KKY16834.1 349 LVMSVTIGFLVAISSNFASAFSATYNFEAWQSGLCFISGLLGSLIGIFFGGHISDWV 405
                 55555555555555555555555455567899*******************999985 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 0.59
                 HHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHH CS
    Sugar_tr 139 lvslyqlaitfGilvaaifglglnktsnadgwrillglqlv 179
                 +v+   +  +fG+l+++ ++  ++  ++++ +  + g+++ 
  KKY16834.1 487 VVTQLAFKAAFGFLLSFYTNPWIDAAGYKNAFGAMAGISAG 527
                 44444445566666666666666555555555555555544 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   6.6   6.4e-07    0.0038      79     220 ..     122     262 ..     115     269 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.4e-07
       TRI12  79 nsslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpaga.splfvgelmsnktkflgllivsipvv 176
                 + ++f t  ++ q +s l+   l  ++grrp+ + +  l    +i    a+ + + ++a  ++g+a+g   + +pl + +++  + +   +   ++   
  KKY16834.1 122 KVAFFFTTTALMQGISNLIWMPLIIKYGRRPVYLSSFTLYAATSIWSGVAQTYASEISARIIMGLASGAGEClAPLTIADIFFLHERGAVMACYTAALS 220
                 556788888899*******************************************************9765438******9766555444443333333 PP

       TRI12 177 vtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyypp 220
                 +  + +  +   ++i+ swr+i+y+   t+ i  l ++v++  p
  KKY16834.1 221 CGVSFGIIIAGLITINHSWRYIYYVA--TALIGGLTVLVFFTMP 262
                 3334677889999*********9864..5556666566665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.51
# Mc/sec: 3309.06
//
Query:       KKY16835.1  [L=292]
Description: putative aromatic ring-opening dioxygenase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-17   61.8   0.0    6.4e-17   61.5   0.0    1.1  1  LigB      Catalytic LigB subunit of aromatic ring-opening dio
  ------ inclusion threshold ------
       0.14   11.8   0.2        4.2    7.1   0.0    2.7  3  COX7B     Cytochrome C oxidase chain VIIB


Domain annotation for each model (and alignments):
>> LigB  Catalytic LigB subunit of aromatic ring-opening dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   7.2e-21   6.4e-17       2     255 ..       6     260 ..       5     277 .. 0.76

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 7.2e-21
        LigB   2 alllsHvppilaavdgkeqealrekvikgyesireriaeksPdtiivvsphhlt..dvnpvfvlgvaeefeaiddfgkflprleyelkgnpeL..aeki 96 
                 +++ sH++++++ ++ +  +++++       + ++++ +++ + +i++ +h+    d   + +++  + +++   +    p+  +++k np++  a+++
  KKY16835.1   6 VHFFSHGSTMMLGEE-SDSANYWK-------KCGDEALANGIKGVIIMGAHWDClaDN--IQIATNPSPNKSPVAYV--HPSKYFDYKLNPDIptANRC 92 
                 799*******77666.55556555.......77999****************995444..44444444444444433..589999999999987799** PP

        LigB  97 aealkksgidlavesnsmklDHGtlvPLelmlpdeakvpvikvslntvaypllsferlykLGeAlrkaveeldknvlilgsGglsHqlegdeaakadaq 195
                 +e+lk +g++ +  + + +  H t   L  m+p+    p + vsln+      ++  ++k+G +lr+++   d+n+li+gsGg+ H+l  ++    +  
  KKY16835.1  93 VELLKSAGFNCTG-NSNFDWIHDTYLILIRMFPN-GCPPTVIVSLNS----RFDPHFHMKVGATLRPLR---DENYLIIGSGGAVHNLYRNKWQ-PMLR 181
                 **********988.8888888************4.455778899999....78****************...****************999866.2333 PP

        LigB 196 ..........tlllneefdeelldllke.....grveelckmskeelsaaaghe.eeelvplvvalGalsgd.....kael 255
                           ++ ++ ef++ ++d +++      r + ++++  ++++ + +h+ +++++  +  +Ga++gd      +el
  KKY16835.1 182 yrdnfamvtpPEAWALEFRQAVQDVITKnsgpqLRRA-MTRL-MKHPQYRDAHAtDDHFMAAMFVAGAAGGDedkgvSGEL 260
                 688899*998888***************665432222.3333.35666666666677777777777888777555444444 PP

>> COX7B  Cytochrome C oxidase chain VIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0   0.00046       4.2      28      75 ..      21      75 ..      13      79 .. 0.72
   2 ?   -2.6   0.0      0.49   4.4e+03      29      40 ..     139     150 ..     132     151 .. 0.79
   3 ?    1.5   0.0     0.027   2.4e+02      14      46 ..     212     247 ..     199     249 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00046
       COX7B 28 kaspdfHdkyGnavlis...GavfcvavwvyvltqigieWnls....PvgrvtPk 75
                + s ++  k G+  l+    G +++ a w  ++ +i i+ n s    Pv+ v P 
  KKY16835.1 21 SDSANYWKKCGDEALANgikGVIIMGAHWDCLADNIQIATNPSpnksPVAYVHPS 75
                55677788888888865111679999************98765111167777775 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.49
       COX7B  29 aspdfHdkyGna 40 
                  +p fH k G++
  KKY16835.1 139 FDPHFHMKVGAT 150
                 5789***99986 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.027
       COX7B  14 arsiqqiaaRqshkkaspdfH...dkyGnavlisGa 46 
                    ++++++R +++ + +d H   d++ +a++++Ga
  KKY16835.1 212 GPQLRRAMTRLMKHPQYRDAHatdDHFMAAMFVAGA 247
                 456789999999999999998555678888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1829.89
//
Query:       KKY16836.1  [L=749]
Description: putative c2h2 type zinc finger domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-07   30.7   4.2    2.4e-07   30.1   4.2    1.4  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   4.2   1.3e-11   2.4e-07      15     208 ..     259     446 ..     236     551 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 1.3e-11
  Fungal_trans  15 lhkpsflpktssenssksayaspllllailalGalfsesetkesnssltses.qefiafplraeilihedfsspssslwilqsLlllelyektssdr 110
                   +h ++++ +             p l+ +++a Ga++s+s+t +    +  e  +         +++     ++ ++ l +lq++ll   +  +s+++
    KKY16836.1 259 IHIHTLDANN----------LRPELISMMVAAGATLSSSRTVRRLGYAIAETvRLS-----IPKMFE--TRNVTTRELRSLQAFLLQLNVDVWSGNK 338
                   5555666666..........99*********************9888888763222.....245555..66677778*******************9 PP

  Fungal_trans 111 alher...hhgvavr.larslgLhrnpsyvgkks.........lwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlwe 194
                   +  e+   h+   v+ l+r  +++r ++   +            w++w+e       l + +F+l  ++++ l  ppl+++ +++l LP  +  lw+
    KKY16836.1 339 RRMELaesHLLPLVTmLRRASRFQRAKFTDLPLLddvpdaldkKWRSWVE-------LSYRTFILSAQVSMALLIPPLISNAEMSLDLPAPET-LWN 427
                   9999999966666666*************998778899998888888888.......7778********************************.*** PP

  Fungal_trans 195 sddaseetlvetk.....l 208
                   + +a+e+++ ++       
    KKY16836.1 428 AKSAEEWRNHYIAihanvD 446
                   ********99877666653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 4910.69
//
Query:       KKY16837.1  [L=260]
Description: putative short chain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-48  164.0   0.0    4.9e-48  163.7   0.0    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    4.7e-42  143.7   0.0    5.9e-42  143.3   0.0    1.1  1  adh_short     short chain dehydrogenase
    7.2e-06   26.0   0.0    1.1e-05   25.4   0.0    1.2  1  KR            KR domain
  ------ inclusion threshold ------
      0.032   14.0   2.0      0.096   12.5   2.0    1.7  1  DFP           DNA / pantothenate metabolism flavoprotein


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.7   0.0   1.1e-51   4.9e-48       1     233 [.      19     257 ..      19     258 .. 0.93

  Alignments for each domain:
  == domain 1  score: 163.7 bits;  conditional E-value: 1.1e-51
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHH.SSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae..vlecDVtdeeqvealveevvekf.gklDilvnnagiapklkgpfletsree 94 
                   G  sgIG aiA +l ++Ga+v + +   +++ ++e++ ++l++   v+e+D +  e  ++lv+++v+ f g++Di+vnna+ a +  +pf+e s ++
    KKY16837.1  19 GSSSGIGSAIAYELSSRGAHVTINYPFPSLRTEAEAVLAKLPTPgiVVEADLSTVEGPATLVSAAVKAFtGNIDIVVNNAALAVN--KPFEEQSLAD 113
                   5679**************************************99856**************************************..********** PP

                   HHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGG.GTEEEEEEEE--BHCTG.GGGSTTHHH CS
  adh_short_C2  95 fdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgp.kgiRvNavspgpikTla.asgikgfde 187
                   +d  ++ n +++fll+++ l++m ++  g+ivn+ s++a+   p +++y+ +K+ + ++tr++A+el p +g +vNavspgp+kT+  a++ +++ +
    KKY16837.1 114 WDLLVNLNGRGTFLLTQESLKYMPKHanGRIVNICSISARGPPPLQTIYAGTKGMVDSFTRCWAKELPPkYGCTVNAVSPGPTKTEGfAAAGPEAMK 210
                   *********************9999889***********99999999********************9989**************986555566777 PP

                   HHHHHHHHSTTSS.-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 188 lleelearaplgr.lgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   +l+   +++p g+ +g+ eeva a+++L+ ++as+i G++ +v gGl
    KKY16837.1 211 VLQPTIDSTPCGKrMGEKEEVAYAVAMLCDERASWICGTHTIVSGGL 257
                   7777777777654399******************************6 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.3   0.0   1.3e-45   5.9e-42       1     188 [.      13     202 ..      13     208 .. 0.92

  Alignments for each domain:
  == domain 1  score: 143.3 bits;  conditional E-value: 1.3e-45
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH.SSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl.gkldvLvnNAGitgsgpfselse 98 
                 kv+++ G ssGIG aia+el ++Ga+v++    ++   e+ + l ++ +  +++++D+++ e   +lv++avk + g++d++vnNA+++ ++pf+e s 
  KKY16837.1  13 KVAVISGSSSGIGSAIAYELSSRGAHVTINYPFPSLRTEAEAVLAKLPTPGIVVEADLSTVEGPATLVSAAVKAFtGNIDIVVNNAALAVNKPFEEQSL 111
                 89**************************96655555555555555556679***********************99*********************** PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGT.EEEEEEEESSBSSHHHH CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptg.irvnavaPGlvdTdmak 188
                 ++w+ ++++N  g+fllt++ l++m k+ +GrIvn++S+ ++ p + ++ Y+ +K+ v+++tr++akel p+   +vnav PG+++T+  +
  KKY16837.1 112 ADWDLLVNLNGRGTFLLTQESLKYMPKHANGRIVNICSISARGPPPLQTIYAGTKGMVDSFTRCWAKELPPKYgCTVNAVSPGPTKTEGFA 202
                 *********************************************************************97644*************9766 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.5e-09   1.1e-05       4     165 ..      16     178 ..      14     191 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.5e-09
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS.S---EEEE---------TTT-- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee.ppikGvihaAgvlrdklleemt 101
                 +i G   g+G ++a  l ++ga+  +     ++ + +++a +a+l   g+    v+aD+s  +  ++l++++ + + ++i  v++ A ++ +k++ee++
  KKY16837.1  16 VISGSSSGIGSAIAYELSSRGAHVTINYP-FPSLRTEAEAVLAKLPTPGIV---VEADLSTVEGPATLVSAAVKAFtGNIDIVVNNAALAVNKPFEEQS 110
                 899******************75444433.335889999999999999985...56899999999999999999999********************** PP

                 HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHH CS
          KR 102 aedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrs 165
                  +d++ +++   +G+  L + + +    +    +v + Si++    + q+ Ya +  ++D++ + +++
  KKY16837.1 111 LADWDLLVNLNGRGTFLLTQESLKympkHANGRIVNICSISARGPPPLQTIYAGTKGMVDSFTRCWAK 178
                 ******************98665555547788899***************************998776 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   2.0   2.2e-05     0.096      19      93 ..      13     101 ..       8     111 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.2e-05
                 TTEEEEE----HHHHHHHHHHHHTT-EEEEEE-S-SS--...........-T...T-EEEE--SHHHHHHHHHHHHTT-.SEEEE---S- CS
         DFP  19 pVRfisNrSSGkmGyalAeaaaarGaeVtlvsgpvslet...........pe...gvevvkvesaeemleaveealkea.divimaAAva 93 
                 +V +is +SSG  G a+A ++ +rGa+Vt+     sl+t           p    ++++  ve  + + +a+ +a+  + div+  AA a
  KKY16837.1  13 KVAVISGSSSG-IGSAIAYELSSRGAHVTINYPFPSLRTeaeavlaklptPGivvEADLSTVEGPATLVSAAVKAFTGNiDIVVNNAALA 101
                 68899******.6***************97543234332223333344323211134567777777777777777655559999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1855.38
//
Query:       KKY16838.1  [L=863]
Description: putative opt oligopeptide transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-175  585.6  46.4   1.5e-175  585.4  46.4    1.0  1  OPT       OPT oligopeptide transporter protein


Domain annotation for each model (and alignments):
>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  585.4  46.4  8.5e-180  1.5e-175       2     616 .]     148     820 ..     147     820 .. 0.98

  Alignments for each domain:
  == domain 1  score: 585.4 bits;  conditional E-value: 8.5e-180
         OPT   2 lTlRavvlGillgvlgsavnmyfglrtglvsissipaallafplgkalarilpk.........lslnpgpftikEnvliqtmasaaatlalatglivvi 91 
                  T+Ra+v+G+l++  ++++n++f++r++++++ + +a+ll +p+gka + +lp+         +slnpg+f++kE++li++ma+++++++++ ++i+ +
  KKY16838.1 148 STIRAWVIGLLFVLGIAFINQLFSIRQPSITVLANVAQLLCYPVGKAAEAFLPDwgftlfgtrHSLNPGKFSRKEHMLITIMANVGSNTPYTDNIIWSQ 246
                 6************************************************************************************************** PP

         OPT  92 palelygqsag..fgylillslsvqllGvgfagplRkflvypeklifPsglataellkalhkpegee..........ksrlkfflivflgsfvwglfpl 178
                  ++++ +qs+   f+y+il++l + ++G+g+ag++R+flvyp+ +++P +l+t++l+ ++h++++             srl+ffl++f+++fv+ +fp+
  KKY16838.1 247 YLPQYFNQSYAgsFAYQILIALGTNFVGYGIAGICRRFLVYPSYCVWPASLVTIALNASFHTERNVSvmgpfktvfnVSRLRFFLYAFAAMFVYFWFPN 345
                 ***998888888**************************************************99988******************************** PP

         OPT 179 ylfpalssfswltwiapknvvlanlf....glgllp.ltfdwnviaayiGsglivplwvavnmliGavlswgiliPllyysngwypaylp......... 263
                 ++ ++ls+f+w+twi+p+n +la+++    glgl+p +tfdwn+ +    ++l+vp+  ++n ++G++ s+++++++ +ysn+++++ylp         
  KKY16838.1 346 WMAQFLSYFNWMTWISPNNLNLATVTgsvnGLGLNPlPTFDWNILLYDNQDPLMVPFFNTINKFLGMFCSMFLVLGI-WYSNIYNTGYLPinsnrvfdr 443
                 *****************************************************************************.********************* PP

         OPT 264 ....ydvteildedgvldyekyigyglmllaalvallylvqfaaitllivhtilkhgkdikaalksa........rsprteeddrhrrlmrkykdvpmw 350
                     y+v++ ++e+g++d eky++y++ +l++++ ++yl++fa+++++i++ +l+h ++i+ ++++         +s  +e++d+h+rlm +y++vp+w
  KKY16838.1 444 fgehYNVSRAINEKGLFDAEKYQAYSPAYLSSANLVIYLLFFAIYAATISYAFLYHRHEIMIGFRNLfarfrkdkSSGDVEYKDVHNRLMASYPEVPEW 542
                 **********************************************************************9998888********************** PP

         OPT 351 wylallvlslvigiivvealftqlpvwglllalllafllaivsaiiaGltglnpvsgigkltqlifgallpgrpvanlvfgavvyaaaaqagdfmqDLK 449
                 wy+++l++++++gi+ ++ ++t ++ ++++++++l+++++++++ii ++tg+   +++++l+++i g ++ g+ +a+++f++++y ++a+a  f +DLK
  KKY16838.1 543 WYMITLLIAIAFGIAGIAGWETYTTPGVVFYGIALCLIFVVPIGIIKAITGI--EVTLNVLAEFIGGSWVAGNALAMNYFKSFGYVTCAHALAFSNDLK 639
                 ****************************************************..********************************************* PP

         OPT 450 tGhllkasPraqfvaqliGtlvgavvniavlkllvkaygdictadasnaftaPqakvfaavavl..lvggk.........kglpwafllgavapfilll 537
                 ++h++k++Pr++f+aq+i+tlv+ +v+++vl+++++ ++ +ctad+ n+ft+P +++f+++avl   +g++         + l  +f lg+++p+i+++
  KKY16838.1 640 LAHYVKIPPRHTFWAQIIATLVSTFVCTGVLNFQMNEIEGVCTADQPNHFTCPGVNTFFTAAVLwgTLGPHkmfgtngqyTALLAGFPLGLILPIIFWV 738
                 ***************************************************************99888888*****999999999999*********** PP

         OPT 538 llkkfpkkstarkl.plplafavgfylppsl..sialligglianlwlkrrdaewakkynyvlaaGLiaGealmgviiaflv 616
                 l+kk+pk+++ r+  p++++ + + ++p++l  +++++ +g++++++ k+r    ++kyn+vl+a +++ +a++g++i+f+v
  KKY16838.1 739 LQKKLPKQTWLRQAhPVIMLYGCLSWAPYNLsnAWPAVPIGWLSMVYFKKRFLGLWSKYNFVLSASFSSAIAIAGIVIFFAV 820
                 **********9999777777889********999**********************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (863 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 5535.02
//
Query:       KKY16839.1  [L=587]
Description: hypothetical protein UCRPC4_g05797 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1060  (0.0591221); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.19u 0.34s 00:00:01.53 Elapsed: 00:00:00.58
# Mc/sec: 3045.57
//
Query:       KKY16840.1  [L=165]
Description: putative cytochrome p450 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.49
# Mc/sec: 1007.33
//
Query:       KKY16841.1  [L=381]
Description: putative 2-dehydropantoate 2-reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-21   76.4   0.0      3e-21   75.9   0.0    1.2  1  ApbA_C    Ketopantoate reductase PanE/ApbA C terminal
    4.4e-18   65.4   0.0    7.4e-18   64.6   0.0    1.4  1  ApbA      Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> ApbA_C  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.0   3.4e-25     3e-21       2     124 ..     234     369 ..     233     370 .. 0.88

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 3.4e-25
      ApbA_C   2 irlarweKllinaainpltalldckngellespelr.alvrallkEalava...........eaeg...velseerleeaveavlektaanrsSMlqDv 85 
                 ++++++ Kl++na+ n+ltalld+ ng+ l++p +  +++ al+ E+++++                  ++++  +le  +++ ++ ++ n+sS+++D+
  KKY16841.1 234 VLTTQLLKLAVNATNNTLTALLDIINGHQLSNPIISgDIFPALISEISQILlslpevsdaviG--PhsrARFERHNLERFIRDMIKVNKTNSSSTREDM 330
                 6789**********************999999987548*************666655555551..04434588889*********************** PP

      ApbA_C  86 eagrktEidyinGavvklAeklgvetPvnellyellkal 124
                 +++++tE++yinG++vk++++lg +++ nell+ l++a+
  KKY16841.1 331 RRKKETELRYINGFLVKRGNELGKDVKLNELLLWLVQAK 369
                 *********************************999886 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   8.2e-22   7.4e-18      61     150 ..      77     181 ..      12     183 .. 0.81

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 8.2e-22
                 H.........SCCCCS-ESEEEE-SSGGGHHHHHHHHGGGECTC.EEEEEESSSSCHHHHHTTTS.....TTSEEEEEEEE-EEEEEETTEEEECS--E CS
        ApbA  61 e.........ekselepidlvivtvKayqteealeeikplldpn.tvvlllqNGlgheeelreal.....pkprvlggvtthgatregpgevhhagkge 144
                 +         +  e+++id +ivtvK   t++al++++ +l+   ++vll+qNG+g+ +el++++      +p+ ++g+++hga+ ++p++  hag+g+
  KKY16841.1  77 KwdhkhtashNLPEDTQIDCLIVTVKGAMTVDALRSVRGRLKGPgSTVLLMQNGMGQRDELDAEIfrdpsTRPKYMQGIISHGAYLTDPFTATHAGNGD 175
                 0333333333466899********************999997544***********************98889************************** PP

                 EEEEES CS
        ApbA 145 ikigel 150
                 i++g l
  KKY16841.1 176 IQLGML 181
                 ***976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.53
# Mc/sec: 2143.98
//
Query:       KKY16842.1  [L=243]
Description: hypothetical protein UCRPC4_g05800 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
        4.3    5.2   6.2        5.4    4.9   6.2    1.0  1  Dicty_REP     Dictyostelium (Slime Mold) REP protein


Domain annotation for each model (and alignments):
>> Dicty_REP  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   6.2    0.0003       5.4     237     361 ..      65     197 ..      49     205 .. 0.57

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0003
   Dicty_REP 237 iesentqrensqpskeknkttttttttt...tttsqar...trkrkaidddklsenqak...ekkknskksdddpqsdfskkssrksgslkdvrvdnis 326
                 ++s+n +r+ + + + +++  t++t+ +   t+  ++r     +r+a ++   +e++a+   ++ + + +++ d+q   ++ +++k    ++ r++   
  KKY16842.1  65 VDSNNPSRHVRAEAEAQARAETERTKEAeveTVRARERgdaEAQRRAEGERAEAEKRAEaarARANGKAEAEADAQRAVHRAQEDKHRAVQEARINAER 163
                 445555555544444444444444433300033333221112344444433333333330003333333344455777888888888899999999999 PP

   Dicty_REP 327 dseldddvnesispeekiisvsnkikqcllEvlks 361
                 d+e  + +++++ + e+ +s    +++ ++++ k+
  KKY16842.1 164 DAEERKRKEQEQAERER-LSQKGGVRDAVVNIAKN 197
                 88888888888877776.57778889888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2112  (0.117798); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                       137  (0.00764125); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.39s 00:00:01.25 Elapsed: 00:00:00.53
# Mc/sec: 1372.07
//
Query:       KKY16843.1  [L=413]
Description: putative mfs [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-19   70.0  17.1    1.7e-19   70.0  17.1    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0  17.1   9.5e-24   1.7e-19      84     348 ..      12     350 ..       1     355 [. 0.69
   2 !    3.5   2.9    0.0016        29     131     172 ..     344     382 ..     333     399 .. 0.68

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 9.5e-24
       MFS_1  84 slw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll......... 172
                 +    +++  ++ G++a+a+ ++  + ++d++   erg ++gl++ + + +  ++p++ g++a+  gW +vfy  a ++  af++  +++         
  KKY16843.1  12 GTNgQWIAKNIVGGFFASAIEALPEISVTDVYFAHERGTYMGLYAFFLAGSNYFAPVICGFIADKQGWKWVFYYPAMFLGAAFIFL-FFFmeetnyvrs 109
                 444467888899**********************************************************************9963.444477776666 PP

       MFS_1 173 ..........peepperkrkspkeee...........................................kgtgpaplvp......awkallkdpvlwil 212
                           +              +                                           + ++     p      + +a+ + ++  + 
  KKY16843.1 110 svgvvettteT--------------SssptlpttpdaekspntvagtgvqdqgegaiseyktktfvqklSLWQ-----PspgedmLSRAIQSLKY--LG 187
                 66666654440..............033333333444555655556677666666665554444333332222.....13222243333333333..47 PP

       MFS_1 213 lialllfffgfsglltllpl........ylqevlglsglllaglllallalvgailallagrlsdr............lgrrrrlllallllllaalgl 291
                 + ++++++f + ++l+++ +        +    +++s   ++gl +  ++l++a ++l++g++sd             + ++ rl+ + ++++++ ++l
  KKY16843.1 188 WPVIFYAGFSYGSYLIWFNVlnatssiiLGGAPYNFS-SSMVGLSYVSCCLGVALASLFTGKFSDWltirlarrnngiMEPEQRLWPFAACVIIVPASL 285
                 7777777777777777777733333333478889999.699999999999999999***************9999999999****************** PP

       MFS_1 292 allavtssavllllvlvliGf.glgfv.....fpsllalasdla..ppeeagtasglfn.tagslg 348
                 +l++v   a+ ++++ +++++ +l+f+     + s ++l+++++  + +++ t++ + n + +++g
  KKY16843.1 286 ILWGVG-AAHGVHWFGLIFSMgTLAFAntcgiTLSCNYLIDSYHeiSGDAMTTVIIVRNtMSFAIG 350
                 ******.66666666666666666666334444445555555553333555566666663333355 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0016
       MFS_1 131 slGailgpllggllasslgWravfyilaivsllafvlfllll 172
                  +++++g+++ +++ ++lg++ +f+ +a+v++ a  +  +++
  KKY16843.1 344 TMSFAIGYGITPWI-ENLGYQNCFVSAAFVGMAASAV--FFI 382
                 56667777777777.5888899999999999888553..332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2673.90
//
Query:       KKY16844.1  [L=521]
Description: putative multicopper oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-39  132.7   2.8    7.8e-39  132.4   0.8    2.3  2  Cu-oxidase_3  Multicopper oxidase
    4.2e-30  105.0   4.6    6.9e-30  104.3   0.9    2.7  2  Cu-oxidase    Multicopper oxidase
      1e-19   70.6   6.7    7.7e-19   67.8   0.1    3.4  3  Cu-oxidase_2  Multicopper oxidase
  ------ inclusion threshold ------
       0.52   11.3   2.4        4.4    8.3   0.4    3.0  2  DUF756        Domain of unknown function (DUF756)


Domain annotation for each model (and alignments):
>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.4   0.8   1.7e-42   7.8e-39       4     118 ..      46     159 ..      43     160 .. 0.96
   2 ?   -2.0   0.0       0.8   3.6e+03      29      45 ..     220     236 ..     196     292 .. 0.63

  Alignments for each domain:
  == domain 1  score: 132.4 bits;  conditional E-value: 1.7e-42
                   EEEEECTTEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-S.SS-B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEEEEEE- CS
  Cu-oxidase_3   4 ektvsplggterevitvNgqfpgptievregdtvvvnvtNkl.dentsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtlwYhsh 99 
                   ++t+sp+g++ r v+tvNg++pgpt+ +++gdtv+v+++N+l +++ts+h+hG++q+ t+  DGv+ +tqcp +pg+s ty+++++q +gt+wYhsh
    KKY16844.1  46 NTTASPDGYE-RIVLTVNGTVPGPTLYADWGDTVKVHLSNSLeNNGTSLHFHGIRQNYTNPEDGVASITQCPTAPGDSITYEWRATQ-YGTTWYHSH 140
                   5788999988.*******************************8889*****************************************.********* PP

                   -TTHHHTT-EEEEEEE-HH CS
  Cu-oxidase_3 100 lslqqaaGlaGaiiiedke 118
                   +slq ++G++G iii+ ++
    KKY16844.1 141 FSLQAWDGVFGGIIINGPA 159
                   ****9**********9876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.8
                   EEEETT-EEEEEEEE-S CS
  Cu-oxidase_3  29 ievregdtvvvnvtNkl 45 
                   + v++g++ +++++N +
    KKY16844.1 220 MAVTSGKSYRMRLVNGA 236
                   33444444444444433 PP

>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.9   1.5e-33   6.9e-30       4     157 ..     169     317 ..     166     319 .. 0.86
   2 ?    1.0   0.1     0.089     4e+02      74     107 ..     421     455 ..     400     457 .. 0.79

  Alignments for each domain:
  == domain 1  score: 104.3 bits;  conditional E-value: 1.5e-33
                 EEEEEEETCBCTTSCBC.HSSCHCHHHHHTT--SEEEETTBSS.......CTTTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEEEETCETT CS
  Cu-oxidase   4 vitlsDwyhkdakelekellasgkapadtppvpdavlingkggfnatladkdgaslatltvepgktyrlriinvsaddslnfsIeGHkltVvevDgvyv 102
                 ++ l+Dw h +a+ l+  +     a+ d p    + lin ++++  +  + ++ s +t++v++gk yr+r++n+++d++++f I++H+ltV  +D v++
  KKY16844.1 169 MLFLNDWSHNTADYLYH-S-----AQVDGPSNLHNGLINDTNTYEDDDGN-ETGSRFTMAVTSGKSYRMRLVNGAIDTHFKFMIDNHTLTVMSTDLVPI 260
                 6889*****99999888.2.....23445888999********9988666.779********************************************* PP

                 SEEEESCEEE-TTEEEEEEEEE-SS..SEEEEEEEEGSSSCHHHHTTSEEEEEEEES CS
  Cu-oxidase 103 epvevdsldIavGqrysvlvtanqa..pgnYwivasgrsnlieafengtaaailrys 157
                 ep++++ l I+ Gqry+v+vta+q+    ++w++a  + + ++++   +  +i++y+
  KKY16844.1 261 EPYNTTVLSIGIGQRYDVVVTADQDdvATDFWMRAIPQEACSDDDSVDNIKGIFHYG 317
                 **********************995589*******7444445555666777788876 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.089
                 EEEESSS-BEEEEETSB-EEEEEE.TCETTSEEEE CS
  Cu-oxidase  74 iinvsaddslnfsIeGHkltVvev.Dgvyvepvev 107
                 +i +s+   +++ ++GH + + +  +g+y ++v++
  KKY16844.1 421 VIETSTAVPHPIHLHGHDFLILAQgTGTYSDNVTL 455
                 56888889999999999887765449998887765 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   1.2      0.01        46      41     120 ..      76     142 ..      56     156 .. 0.66
   2 ?   -2.4   0.0      0.79   3.6e+03      37      55 ..     222     240 ..     194     286 .. 0.59
   3 !   67.8   0.1   1.7e-22   7.7e-19       2     105 ..     385     478 ..     384     484 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.01
                   EEEEEEEEE-SSS.-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEE..EE-TTEEEEEEEES.S-EEEEEEESSH CS
  Cu-oxidase_2  41 evveiviqnntkl.pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtv..qvppggwvairfkadnpGvwllHCHil 120
                   ++v++ + n+ +    ++H+HG +    + + g                    +   + pg+ ++++++a++ G   +H+H+ 
    KKY16844.1  76 DTVKVHLSNSLENnGTSLHFHGIRQNYTNPEDGV----------------ASITqcPTAPGDSITYEWRATQYGTTWYHSHFS 142
                   5566666665554445666666644444333333................233300345699999999999999999999986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.79
                   EETTEEEEEEEEE-SSS-E CS
  Cu-oxidase_2  37 lpkgevveiviqnntklpH 55 
                   +  g+  ++ + n +  +H
    KKY16844.1 222 VTSGKSYRMRLVNGAIDTH 240
                   4445555555555443333 PP

  == domain 3  score: 67.8 bits;  conditional E-value: 1.7e-22
                   XS-SCCCCCCCEEEEEEEEEEEETC.CTTTSSEEEEEET.TEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE- CS
  Cu-oxidase_2   2 vppklptllqltsgneeaseitnge.efsentnvitlpk.gevveiviqnntklpHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvp 96 
                   v++++ptllq+           +g+  +s+  +v++++  +++v +vi+ +t +pHP+HlHGhdf +l++g+g+    d+ +++ +np+rrd +++p
    KKY16844.1 385 VEWENPTLLQIY----------DGAtSWSNASHVVEVDGtDNWVTVVIETSTAVPHPIHLHGHDFLILAQGTGT--YSDNVTLSEDNPPRRDIAMLP 469
                   678999999999..........444499**********99**********************************..999999*************** PP

                   TTEEEEEEE CS
  Cu-oxidase_2  97 pggwvairf 105
                   ++g+++ + 
    KKY16844.1 470 SSGYLVFAL 478
                   *****9885 PP

>> DUF756  Domain of unknown function (DUF756)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.4   0.00098       4.4      12      62 ..      76     138 ..      27     144 .. 0.77
   2 ?    1.3   0.1      0.15   6.8e+02      58      70 ..     273     285 ..     211     295 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00098
      DUF756  12 gnlrltlrN...tgkaaarftVydnaka........pwtytveagdqledhwklassg.gwYd 62 
                  +++++l+N      ++++f+   ++++         ++   ++gd+++++w + + g  wY+
  KKY16844.1  76 DTVKVHLSNsleNNGTSLHFHGIRQNYTnpedgvasITQCPTAPGDSITYEWRATQYGtTWYH 138
                 4577777774322347888885444344766665555888889***************99**7 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.15
      DUF756  58 ggwYdltVtgpng 70 
                 g++Yd+ Vt++++
  KKY16844.1 273 GQRYDVVVTADQD 285
                 5799999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3520.94
//
Query:       KKY16845.1  [L=196]
Description: putative cytochrome p450 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.50
# Mc/sec: 1179.22
//
Query:       KKY16846.1  [L=533]
Description: putative general amidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-93  311.7   0.0    1.2e-92  311.2   0.0    1.2  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.2   0.0   6.8e-97   1.2e-92       1     450 [.      82     521 ..      82     522 .. 0.89

  Alignments for each domain:
  == domain 1  score: 311.2 bits;  conditional E-value: 6.8e-97
                 HHHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT.......TTTT-EEEEETTB--TTSB--TTSGG.GTT-B-SS--HHHHHHHHTT-EEEE CS
     Amidase   1 elveaflkrieavneklnalvtvfieealaqAakldkkra.rgkekgpLhGvPisvKDnidvkgvpttaGska.lenypaekDatvverLkkaGavilg 97 
                 e++ af+kr++ +++ +n+l ++f++ ala A++ld++ + +gk+ gp+hG+Pis+KD++++kg+ +t G+ +  +n pa++++ +v+ L ++Gav+++
  KKY16846.1  82 EVTLAFCKRAAIAHQVTNCLTEIFFDRALASAKELDEYLEkEGKPLGPFHGLPISLKDSFRIKGISSTIGIVSfIANGPADTNSPLVDILLANGAVLYV 180
                 799*************************************9*****************************865168899******************** PP

                 EE--SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB-.....-SSTTT-EEE CS
     Amidase  98 kTnmdefamgsstensvfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvv.....alessldvvG 191
                 kTn+++++m+++++n+vfg+t NP++++ t+GGSSGG++A++A++++p+++GtD++GSiRiPA +cg++G+KP+  rv++ g       + + +++++G
  KKY16846.1 181 KTNIPQTLMTADSDNNVFGRTLNPYKLKFTAGGSSGGEGALLAMRGSPIGVGTDIAGSIRIPALCCGTFGFKPSIDRVPYGGQQppgklGSPGIIASAG 279
                 *************************************************************************************9999999******* PP

                 EEESSHHHHHHHHHHHBS--TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHHHHHH CS
     Amidase 192 plarsvedlalllrvilgedpkdstssvipeesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelpsleealslyyl 290
                 pla sv+d+ ++l++++ + p+d++ s      ++  +     + +l+iG+v ed+ + + p++ ra+++a ++L++++h+++ ++++ +++   +  l
  KKY16846.1 280 PLANSVRDAQFFLQTVISSKPWDYDPST-----HAIPWHPVPPKTQLKIGLVLEDPAFPVLPPIIRALKTASERLQALNHTIIALSPETFPSYDTTARL 373
                 ***************************8.....678999999999******************************************999998885555 PP

                 HHHHHHHHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCC..BSEEEEESSSSS-- CS
     Amidase 291 ilvaeassnlarylgvryerlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafee..lDvllsPtaptpap 387
                 ++++   +n++              +  + + + + e+l ++vk  +++      +   + ++  + ++r+ +  ++ k++++  lDv+++P a t+a 
  KKY16846.1 374 AWAYFVLDNTQ--------------TPFKNI-AASGEPLVPSVKKLLPETRPDPLTL--E-NVFDMNQERAKISAAWHKVYKDndLDVIIAPGAHTTAC 454
                 55555554522..............323333.3567889999999988888666655..3.444455556689999999999999************** PP

                 BCCCCCHHHCSHHHHHGCCTTT...HHHHHTT....--EEEEECCCCT...TECEEEEEEESTT-HHHH CS
     Amidase 388 rlgekdktidsytvlynlldftavvvpvnlag....lpalsvpagksed..glPvGvqvigkafqeetl 450
                 +++   +    yt+ +nl ++++  +p   a+    lp+ ++p+ +  +  g P  +qv+gk+ q+e+l
  KKY16846.1 455 PHDTYMS--APYTAAWNLVNYPSCIIPYLKADksldLPDSRIPSYDPSNfhGIPAHIQVVGKKEQDEAL 521
                 *998765..78***********99999865551111455556666554488***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3590.16
//
Query:       KKY16847.1  [L=554]
Description: hypothetical protein UCRPC4_g05805 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-13   51.4   0.2    6.4e-13   49.2   0.2    2.1  2  APH            Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.2   3.6e-17   6.4e-13      19     205 ..     113     338 ..      79     379 .. 0.67
   2 ?   -3.4   0.0      0.42   7.5e+03      91     132 ..     456     498 ..     451     539 .. 0.56

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 3.6e-17
                 TT--EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTB.S-EEETTEEEEEEE----EE-SS...HHHHHHHHHHHHHHHHHHCCHHCH..-S CS
         APH  19 pagryvlrrnpparaaeeirrevallrlLakagv.pvPevlagd.tddeeigllfalieyvpgrsllr...klsaaqlpellealgeflaalhqvd.pa 111
                 + g y+lr+++    + +++re a+l+++ ++   p+P  +agd  +++ +g++f+l+  + g+ l+    +l+++q+  l  ++++f  +++++    
  KKY16847.1 113 TPGVYILRVPRSL-FDSDVERERAILQFVKNRTTlPIPIEVAGDsGSNNALGRPFVLQHMLSGTRLDKvwgQLNHNQRLSLTKEMARFYVEMQDTTnSS 210
                 3369*********.****************66556*********99999**********************************************3222 PP

                 TTTB-.......SHHCHTCCHHHHHHCHHHCCCGCCTCC..HHHHHHHH.......................HHHHHHHH--S.........SS-EEEE CS
         APH 112 alpla.......dflaqdlellrqlesatarllaselld..lleeleeq.......................vlaalaallpg.........elptvll 169
                 a +la       d + q+ ++   +++a+ +l + e ++         +                        l +++    +         +++  l 
  KKY16847.1 211 AGRLAlnlslrpDGSIQTFDFSSPVDKAKDPLTPTEPFQfmC------EkiltwhncfrisgfengfpyfsqMLKMVK----RmqairgtfnPQEYYLR 299
                 333333333333222234444444444444444433333321......112222345555555555553333333333....23334778889****** PP

                 -SS-SGGGEEEC.....TTEEEEE---TT-EEEECCHHH CS
         APH 170 HgDlhpgNllvd...pddgrvtGviDfedaglgpplyDl 205
                 H+Dl p+N+lv    +d   +tG++D++d+  +p ++ +
  KKY16847.1 300 HNDLYPRNILVSirdEDTAVITGILDWDDTYFAPTAVAF 338
                 **************6666666*********999987766 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.42
                 HHHHHHHHHHHHCCHHCH..-STTTB-SHHCHTCCHHHHHHCH CS
         APH  91 lpellealgeflaalhqvd.paalpladflaqdlellrqlesa 132
                 +pe+ ++l+e+l + ++++ + +   +++ ++  +++ +++ +
  KKY16847.1 456 DPEMPDWLHEVLNQSSEHSsAGNKSSRHEQEDLSDNASDIHLS 498
                 5777778888888777777555555555555544444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 3449.87
//
Query:       KKY16848.1  [L=813]
Description: putative qde-2-interacting protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1200  (0.0669307); expected 358.6 (0.02)
Passed bias filter:                      679  (0.0378716); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.52
# Mc/sec: 4716.23
//
Query:       KKY16849.1  [L=792]
Description: putative phd finger domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-06   28.0   7.8    3.1e-06   27.0   7.8    1.6  1  PHD        PHD-finger
  ------ inclusion threshold ------
      0.036   14.6   0.0      0.084   13.5   0.0    1.7  1  ING        Inhibitor of growth proteins N-terminal histone-bi
        2.2    7.9   4.0        4.4    7.0   4.0    1.4  1  PHD_2      PHD-finger
          4    7.9   5.9        7.3    7.0   5.9    1.4  1  zf-RING_2  Ring finger domain


Domain annotation for each model (and alignments):
>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   7.8     7e-10   3.1e-06       1      51 [.     722     773 ..     722     774 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 7e-10
                 SBTTTTSTTSTTSCEEEET......TTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   1 rCavCkkksdeeeelvqCd......gCkrwfHqkClkppleseekpegewlCekCke 51 
                 +C +C++     ++++ Cd      gC++wfH+ C+++++   +  + +w+C++C+ 
  KKY16849.1 722 YC-ICDD--VSYGDMIACDhanvkdGCQEWFHMGCVGLHDM--PGRTVKWYCPNCRV 773
                 69.**99..679******55555559*************88..444457******86 PP

>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.9e-05     0.084       3      98 ..      22     120 ..      20     123 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.9e-05
                 HHHHTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..TS..S-HHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
         ING   3 edyldsvenLPlelqrnltelreiDakvqellkeidskiekfl..kngslqknekeeels.riqeelkeaqelldeKiqlaqqaldlvdkhlrrLdqdl 98 
                  d+ld  e  P++l r lt++r +D  + ++ + +++  + ++   +   +  +++ +l+ +i  +l++a++  ++ ++ a+ a++   ++++rL++ +
  KKY16849.1  22 TDLLDFTEYYPSDLIRSLTLIRGLDSTYLNNSHAVHDLSRIYSalPSLPASCRPDSAALReQISFHLDRAIDARENTLAEATRAYEATLRNTNRLQSIV 120
                 5789999999*************************8888888876666677777888888899999999999999999999999999999999998755 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.0   0.00097       4.4       8      36 .]     743     772 ..     732     772 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00097
       PHD_2   8 dkCsvaVHasCYGvskesdgee.WlCrrCe 36 
                 d+C+  +H+ C G+ +++  +  W+C  C+
  KKY16849.1 743 DGCQEWFHMGCVGLHDMPGRTVkWYCPNCR 772
                 389999***********987667******6 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.9    0.0016       7.3       4      44 .]     723     772 ..     723     772 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0016
   zf-RING_2   4 pICleelssadsvl......llpCgHvfhreClerwlrssst....CPlCr 44 
                 +IC +++s +d +       ++ C+  fh  C+  +  + +t    CP+Cr
  KKY16849.1 723 CIC-DDVSYGDMIAcdhanvKDGCQEWFHMGCVGLHDMPGRTvkwyCPNCR 772
                 577.667666664423333234699999999985544455556799****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1191  (0.0664287); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.51
# Mc/sec: 4683.67
//
Query:       KKY16850.1  [L=218]
Description: putative exosome-associated family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-17   64.0   0.3    1.4e-17   64.0   0.3    2.3  2  Sas10_Utp3  Sas10/Utp3/C1D family
     0.0023   18.1   0.4     0.0023   18.1   0.4    1.7  2  Rtt102p     Rtt102p-like transcription regulator protein
  ------ inclusion threshold ------
       0.82    9.5   6.3        3.5    7.4   0.2    2.4  2  HeLo        Prion-inhibition and propagation
       0.84    9.7   3.9        3.6    7.7   1.7    2.7  2  SNARE       SNARE domain
        2.6    8.0   4.6         17    5.3   0.4    2.6  3  HSBP1       Heat shock factor binding protein 1
        3.8    5.5   5.6        4.1    5.4   5.6    1.0  1  Hid1        High-temperature-induced dauer-formation protein
        3.8    7.8   5.2         84    3.5   0.1    3.0  3  XhlA        Haemolysin XhlA


Domain annotation for each model (and alignments):
>> Sas10_Utp3  Sas10/Utp3/C1D family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.3   5.6e-21   1.4e-17       3      87 .]      12      88 ..      10      88 .. 0.91
   2 ?   -1.9   3.0         2   5.2e+03       2      21 ..     170     189 ..     139     216 .. 0.66

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 5.6e-21
  Sas10_Utp3  3 slsksldelqeslepllskakaee.kkslsdeklsegisllslKnelllaYllnlllylllklsgvelkdhpvvkeLvrlRvyleK 87
                 l++++d+l+++leplls a +++ k      kl+    l+++K+++l++Y +++ll+++l+l+g+++k+hpv+keL r+R y+eK
  KKY16850.1 12 RLDDNIDDLEDHLEPLLSTAFSATtK------KLPV---LDRAKLYVLVTYSIESLLFSYLRLHGQNAKEHPVFKELSRVRLYFEK 88
                6899**************76555533......6788...**********************************************9 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2
  Sas10_Utp3   2 eslsksldelqeslepllsk 21 
                 ++l+k+ +e++e+  + +++
  KKY16850.1 170 DQLEKNAEETEEQTGSTSEA 189
                 34555555555555555444 PP

>> Rtt102p  Rtt102p-like transcription regulator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.4   9.1e-07    0.0023      85     127 ..     122     171 ..     117     176 .. 0.90
   2 ?   -2.9   0.5       2.8   7.2e+03      48      48 ..     200     200 ..     177     216 .. 0.52

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 9.1e-07
                 TCCB--XXXXX.......XXXXXXXXXXXXX..XXXXXXXXXXXXXXXXX CS
     Rtt102p  85 skydrtkkske.......lkvtnaksaneeaegdsLtvddIRgAVGgses 127
                 ++ydr++ ++e        k+ n +s n++ ++ sL+  +I gAVG+ + 
  KKY16850.1 122 DRYDRQRAEREarenalaVKKLNKMSSNSTRQKRSLATAEIEGAVGNIDQ 171
                 5799999888889999999999*************************986 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.8
                 - CS
     Rtt102p  48 e 48 
                 +
  KKY16850.1 200 N 200
                 1 PP

>> HeLo  Prion-inhibition and propagation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.2    0.0014       3.5     154     191 ..       2      38 ..       1      51 [. 0.79
   2 ?    4.2   1.8     0.013        34      71     119 ..     152     210 ..     111     217 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0014
                 SHHHHHHHHHHHHHHHHHHHHTTT-H..HHHHHHHHHH CS
        HeLo 154 dkkkfeelvkdlkelvdsLeeLlpasqqqrvqrlvree 191
                 d +k+++lv++l + +d+Le+ l++  +++  ++++++
  KKY16850.1   2 DIAKLTDLVDRLDDNIDDLEDHLEPL-LSTAFSATTKK 38 
                 889******************99998.55555555444 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.013
                 .......HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CGG...........G-B--GGG CS
        HeLo  71 r......ralvleileqiealleefeklqeryglklekqdass....sslalssereks 119
                 r       a+++  +++i +l +++e+ +e+ g   e+ ++++    ++++ ss+r+++
  KKY16850.1 152 RqkrslaTAEIEGAVGNIDQLEKNAEETEEQTGSTSEAPTQTGapkkKNKESSSHRRDR 210
                 12233446688899999999999999999999988887776655555222222222222 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   1.7    0.0014       3.6       2      18 ..       9      25 ..       8      25 .. 0.93
   2 ?    0.7   0.0      0.21   5.4e+02       3      16 ..     169     182 ..     167     187 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0014
                HHHHHHHHHHHHHHHHH CS
       SNARE  2 mvDrIdtnVenaqsnve 18
                +vDr+d+n+++ ++++e
  KKY16850.1  9 LVDRLDDNIDDLEDHLE 25
                8**************97 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHHH CS
       SNARE   3 vDrIdtnVenaqsn 16 
                 +D ++ n e++++ 
  KKY16850.1 169 IDQLEKNAEETEEQ 182
                 78888898888765 PP

>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.4    0.0067        17      29      47 ..      10      28 ..       3      31 .. 0.69
   2 ?   -3.2   0.0       3.2   8.2e+03      27      34 ..     141     148 ..     140     149 .. 0.60
   3 ?    4.0   0.1     0.017        44      36      51 .]     169     184 ..     165     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0067
       HSBP1 29 iDdMssriDdLEksiadlm 47
                +D +   iDdLE +++ l 
  KKY16850.1 10 VDRLDDNIDDLEDHLEPLL 28
                5666678999998887665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.2
       HSBP1  27 sriDdMss 34 
                 ++++ Mss
  KKY16850.1 141 KKLNKMSS 148
                 56666665 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.017
       HSBP1  36 iDdLEksiadlmtqag 51 
                 iD+LEk+ ++  +q+g
  KKY16850.1 169 IDQLEKNAEETEEQTG 184
                 9******999999876 PP

>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   5.6    0.0016       4.1     565     680 ..      73     215 ..      57     218 .] 0.45

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0016
        Hid1 565 rkvfealrnltlesaseeiersne..............................sarldsideeeeenssessrieesrsesrspslsevpelksslai 633
                 + vf+ l+ ++l +++++ ++                                 + r ++++ e+    ++ +++++  ++ r+ ++ +  e++ ++  
  KKY16850.1  73 HPVFKELSRVRLYFEKIKETETGGptkretlaldkgaagriirhglsgndrydrQ-RAEREARENALAVKKLNKMSS--NSTRQKRSLATAEIEGAVGN 168
                 5566666666666655443333335566666777777777777777765544321.111111111111111111111..11122222233344444444 PP

        Hid1 634 tddeskaereksatessssqavsqlremsekarakesaesteesrqe 680
                  d+ +k+ +e+++++ s+s+a +q+  +++k+++ +s+  +++++q+
  KKY16850.1 169 IDQLEKNAEETEEQTGSTSEAPTQTGAPKKKNKESSSHRRDRRKKQK 215
                 44444444444444444444444444444444444444444444443 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1      0.06   1.5e+02      11      29 ..       8      26 ..       2      37 .. 0.69
   2 ?    3.5   0.1     0.033        84      37      64 ..     139     166 ..     121     169 .. 0.73
   3 ?    3.1   0.4     0.044   1.1e+02      19      34 ..     168     183 ..     159     188 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.06
        XhlA 11 tkldnleervdkleekaae 29
                  +d l++ +d+le++ + 
  KKY16850.1  8 DLVDRLDDNIDDLEDHLEP 26
                5578888888888887665 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.033
        XhlA  37 leedlkklesnqkWlirtiiGalisavi 64 
                 + ++l+k+ sn + ++r +++a i +++
  KKY16850.1 139 AVKKLNKMSSNSTRQKRSLATAEIEGAV 166
                 4689999999999999999999888776 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.044
        XhlA  19 rvdkleekaaeaeeki 34 
                  +d+le++a+e+ee+ 
  KKY16850.1 168 NIDQLEKNAEETEEQT 183
                 477799*****99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1513  (0.0843884); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 1544.66
//
Query:       KKY16851.1  [L=517]
Description: putative gpi-anchored cell wall beta-endoglucanase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-43  146.3   0.6    2.1e-42  144.9   0.0    1.9  2  But2            Ubiquitin 3 binding protein But2 C-terminal d
    9.6e-06   25.4   1.1    1.8e-05   24.5   0.4    1.8  3  Glyco_hydro_17  Glycosyl hydrolases family 17


Domain annotation for each model (and alignments):
>> But2  Ubiquitin 3 binding protein But2 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.3       0.4   3.6e+03       9      29 ..     328     348 ..     300     359 .. 0.65
   2 !  144.9   0.0   2.3e-46   2.1e-42       1     140 [.     366     505 ..     366     507 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.4
        But2   9 vssssPdkafgtsyngtvsst 29 
                 vsss+P+ ++ +s + +++st
  KKY16851.1 328 VSSSTPTISLTQSSTTSATST 348
                 445555555544444444443 PP

  == domain 2  score: 144.9 bits;  conditional E-value: 2.3e-46
        But2   1 efPhlIvpvssssPdkafgtsyngtvsstdvstifnFdipasaagktCslvflfptqsqletssytlsGsgkfkfsklaapatesttynnkPavkeelg 99 
                 +fPhlI+p+++++Pd+a+g sy g+ s t vst+fnFdip s+ag +C+l flfp+ +q++++sy+l+Gsg++ +s l +p+  st++nn+P+v++ lg
  KKY16851.1 366 QFPHLIIPIDENRPDQALGDSYYGNFSHT-VSTLFNFDIPISTAGLSCTLIFLFPNTDQMPSASYSLEGSGGLYISSLVTPVMISTNWNNAPPVAAVLG 463
                 79***************************.************9******************************************************** PP

        But2 100 k.ttlspGnaytiasfpCpagqavsyevssagdtsLeffqdy 140
                 + ++l+ G +yt+ +++Cp+gq++++evs++++ +L++fqd+
  KKY16851.1 464 TiAELEHGSSYTLGTGECPSGQKIGIEVSGTDTLNLTYFQDS 505
                 *99*************************************97 PP

>> Glyco_hydro_17  Glycosyl hydrolases family 17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.48   4.3e+03       2      17 ..      23      37 ..      23      49 .. 0.77
   2 ?   -3.3   0.0       0.6   5.3e+03     259     278 ..      62      81 ..      52      83 .. 0.75
   3 !   24.5   0.4     2e-09   1.8e-05     152     285 ..     177     287 ..     149     314 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.48
  Glyco_hydro_17  2 gvnyGvkgnnlPstsk 17
                    g+nyG   n++ s++ 
      KKY16851.1 23 GFNYGATFNDD-SPKT 37
                    89*****9998.6654 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.6
  Glyco_hydro_17 259 NlikkvkeGtpskpgkgiet 278
                      l   +++Gtp  p+ +i+ 
      KKY16851.1  62 RLFTMIQAGTPDTPSAAIQA 81 
                     4778899*******999986 PP

  == domain 3  score: 24.5 bits;  conditional E-value: 2e-09
  Glyco_hydro_17 152 evkpvvdpivvflagtnspllvnvyPYfvysndpsnvsLdyalfqkqslvndnglayrnlfDaildavyaaqekkGgtdielvvsEtGWPsdGst 246
                     +    vd +  +++++n++++++++  f   ++       y ++q    ++  +l +  +fDa  d+v +a+ k       ++  E+GWP  G  
      KKY16851.1 177 G---HVDTWTAWVNSSNKAVIEASD--FLGMDA-------YPYYQDTEPNS-IDLGSLLFFDAYNDTVAMAMGK------PVWNTEAGWPVSGP- 251
                     3...49*******************..655566.......89999988885.899****************977......4899**********. PP

  Glyco_hydro_17 247 gaslenaatyveNlikkvkeGtpskpgkgietyvfalFd 285
                       + ++a++++e + k+++   ++  g  i+t  f l d
      KKY16851.1 252 --TSNQAVPSLEDAQKFWNSVGCEIFG-QINTWWFTLQD 287
                     ..5559*************999**999.99999998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.48
# Mc/sec: 3241.76
//
Query:       KKY16852.1  [L=408]
Description: hypothetical protein UCRPC4_g05810 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-38  128.5   0.0    1.1e-37  127.9   0.0    1.3  1  Stb3      Putative Sin3 binding protein


Domain annotation for each model (and alignments):
>> Stb3  Putative Sin3 binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.9   0.0   6.2e-42   1.1e-37       1      87 [.     121     213 ..     121     216 .. 0.97

  Alignments for each domain:
  == domain 1  score: 127.9 bits;  conditional E-value: 6.2e-42
        Stb3   1 itpeklakahlpeillekGPlaiRhitaalttsvpgFsklspskaRRlvvaalegr......adkendvvfekvGWGrWdakkvgepereeke 87 
                 itp +lak+hlp+ill++GPlaiRh++++lttsvpgFs+++p+kaRRlvv+a+egr      ++ +++v fekvGWGrWda+ +g+p re+++
  KKY16852.1 121 ITPIMLAKYHLPDILLSHGPLAIRHVMSYLTTSVPGFSRVPPAKARRLVVSAFEGRgsggegGGLDGNVLFEKVGWGRWDARIRGQPPRERQA 213
                 8*********************************************************9999999**********************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 2684.72
//
Query:       KKY16853.1  [L=1364]
Description: putative serine threonine protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-39  136.4   0.0    1.6e-39  135.8   0.0    1.2  1  Pkinase      Protein kinase domain
    8.1e-32  109.7   0.0    1.7e-31  108.7   0.0    1.6  1  Med10        Transcription factor subunit Med10 of Mediator c
    2.1e-29  102.6   0.0      3e-29  102.1   0.0    1.2  1  Pkinase_Tyr  Protein tyrosine kinase
      0.008   15.5   0.1      0.016   14.5   0.0    1.5  2  Kinase-like  Kinase-like
  ------ inclusion threshold ------
      0.024   14.6   0.0        4.3    7.4   0.0    2.9  2  IR1-M        Nup358/RanBP2 E3 ligase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.8   0.0   4.6e-43   1.6e-39       4     260 ..      52     320 ..      49     323 .. 0.87

  Alignments for each domain:
  == domain 1  score: 135.8 bits;  conditional E-value: 4.6e-43
                 EEEEEEESSEEEEEEEETT..T.TEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHH..H CS
     Pkinase   4 leklGeGsfGkVykaveke..t.gkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee.....kdelylvleyveggeladlle..r 91 
                 ++ l eG+f+ Vy ++ ++  + ++  ++K++++ ++++    ++++E++ +kklk h++iv+++++  +       e++l++e+++gg l d+++   
  KKY16853.1  52 EKYLSEGGFAHVYVVRLQKpvDgEELAVLKRVAVPDKEHLA--NMRTEVETMKKLKgHRRIVTYIDSHASqlkggGYEVFLLMEFCSGGGLIDFMNtrL 148
                 5667899***9998876542341555567999988777765..6************************9999999999*****************9643 PP

                 HSS--HHHHHHHHHHHHHHHHHHHHTT..EE-SS-SGGGEEEE.TTTE..EEE-SGTTSEESSSSCS..........BCTTTSCGGGS-HHHH...TTS CS
     Pkinase  92 kgslseeeakkiakqilegleylHskg..iiHrDlKpeNiLid.ekge..lKitDFGlakelesssk..........ltsfvgtseYlAPEvl...ken 172
                 +  l+e e+ +i++ ++eg++ +H  +  ++HrDlK eN+Li+  kg    K++DFG  +  +   +            ++  t +Y++PE++   +++
  KKY16853.1 149 QHRLTEPEILHIFSDVAEGVATMHYLKppLLHRDLKVENVLIStAKGTrtYKVCDFGSTAPPRPAATsaaegrliedDVQRHTTLQYRSPEMIdvyRRQ 247
                 455*********************77767**************6666688*******99888777777889999998778899***********9999* PP

                 CBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHT CS
     Pkinase 173 eyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellq 260
                 ++++k+D+W+lGv+ly+l + ++pf+          e+ q    + il+  ++k+p    +s+ +k l+ ++lk++p kR+ + ++++
  KKY16853.1 248 PIDEKSDIWALGVLLYKLCYYTTPFE----------EVGQ----MAILN-ASFKFPSYPRFSDRLKLLIASMLKENPAKRPNIYQVVS 320
                 **************************..........5666....44553.4899****************************999886 PP

>> Med10  Transcription factor subunit Med10 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7   0.0   4.7e-35   1.7e-31       3     121 .]    1219    1349 ..    1217    1349 .. 0.97

  Alignments for each domain:
  == domain 1  score: 108.7 bits;  conditional E-value: 4.7e-35
                  HHHHHHHHHHHHHHHHHS--TT.S-TTHHHHHHHHHHHHHHHHHHHHH................HH--EEEHHHHHHHHTTB-HHHHHHHHHHHHHH CS
       Med10    3 qlkeviqsllelgvqvsdydenessqevlaqklktlvesLqelsktaskl..............lqdikiPlelieyvenGrNPdiYtrefvelvrr 85  
                   lk+++q+l+++++++  y e   ++ +l +k++tl++sLq+l ++ +++               +++ iP e+i+yv++GrNPdiYtrefve + r
  KKY16853.1 1219 ALKNTVQDLFDIQAMTLGYVE--GTDVELIRKIETLTTSLQDLRSLVANQshaetdtrnlsassDTLPLIPREIIDYVDEGRNPDIYTREFVESILR 1313
                  69******************9..8********************999888899**********999******************************* PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH CS
       Med10   86 kNqlmkGkmeafkkfrdvLaeelekalPelredver 121 
                   Nq + Gk++af++f d+La+e++k++P ++++v+r
  KKY16853.1 1314 YNQNLAGKRKAFADFGDILAAEMKKKIPGISAEVDR 1349
                  ******************************999975 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.0   8.5e-33     3e-29       3     258 ..      51     321 ..      49     322 .. 0.82

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 8.5e-33
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE.....SSSS..EEEEEE--TTEBHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvct.....keep..llivteyvkgGdLlkfL 92 
                  ++k l eG f++V+  +l+ +  + e+  ++K + +  ++e+ +++ +e+++mkkl  h++iv ++               +++++e+++gG L +f+
   KKY16853.1  51 VEKYLSEGGFAHVYVVRLQ-KPVDGEELAVLKRV-AVPDKEHLANMRTEVETMKKLkGHRRIVTYIDSHAsqlkgG--GyeVFLLMEFCSGGGLIDFM 144
                  67899**************.55555555556777.556666799************99*******99888544333..155***************** PP

                  HHTCTTTSBHHHHHHHHHHHHHHHHHHH..HTTEEEST-SGGGEEEEE...TTEEEE-STTTHEETTTSSEE.......EETTSSTSGGGGS-HHHHH CS
  Pkinase_Tyr  93 rkkekekltlkdllsfalqvAkGmeyLe..skklvHrdlaarNvLlse...nkvvkisDfGLardiekddey.......vkkeeaklpvkWmapEslk 178
                  +++ +++lt  ++l++  +vA+G++ ++  +  l+Hrdl   NvL+s+   +++ k++DfG +       +        +++ ++++ +++ +pE+++
   KKY16853.1 145 NTRLQHRLTEPEILHIFSDVAEGVATMHylKPPLLHRDLKVENVLISTakgTRTYKVCDFGSTAPPRPAATSaaegrliEDDVQRHTTLQYRSPEMID 242
                  **********************966555113469*************9666789*******87543222221112334477888999**********9 PP

                  HSE...EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHH CS
  Pkinase_Tyr 179 ekk...ftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselvek 258
                    +   + +ksD+W+ Gvll+ ++    +p++++ ++ +   l+++ + +     +++l+ l+ + ++e+p++Rp++ ++v++
   KKY16853.1 243 VYRrqpIDEKSDIWALGVLLYKLCY-YTTPFEEVGQMAI---LNASFKFPSYPRFSDRLKLLIASMLKENPAKRPNIYQVVSE 321
                  877778*****************99.5799999988775...56788899999999*********************999875 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1         2   7.3e+03      15      71 ..      50     106 ..      46     109 .. 0.78
   2 !   14.5   0.0   4.5e-06     0.016     230     288 .]     252     312 ..     238     312 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2
  Kinase-like  15 vrgellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeqelairllrg 71 
                  v+ + l +g++  v+ v+ q+  +  ++ v    + + k+ l +++ ++  +++l+g
   KKY16853.1  50 VVEKYLSEGGFAHVYVVRLQKPVDGEELAVLKRVAVPDKEHLANMRTEVETMKKLKG 106
                  566778888888999998888877778888888888888999999988888888776 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 4.5e-06
  Kinase-like 230 kldaWqlGlviyriwclklPltlateea..keewkfklckkipekvkaLlkkfLqlsqedR 288
                  k d W+lG+  y +   + P++++ + a  + ++kf    + ++ +k+L++ +L+ +  +R
   KKY16853.1 252 KSDIWALGVLLYKLCYYTTPFEEVGQMAilNASFKFPSYPRFSDRLKLLIASMLKENPAKR 312
                  679*******************998776226778999999***************998776 PP

>> IR1-M  Nup358/RanBP2 E3 ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.016        56      24      51 ..     771     799 ..     754     808 .. 0.70
   2 ?    7.4   0.0    0.0012       4.3       9      34 ..    1122    1148 ..    1120    1162 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.016
       IR1-M  24 PpTFfCGvssdtd.deddlEDfetevrkl 51 
                 P        sd++   dd+ED+  evr+ 
  KKY16853.1 771 PISGSVATGSDDEhALDDAEDVSPEVRRE 799
                 5555455679999899**********975 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0012
       IR1-M    9 kPTpeekalAksLqlPpTFfC.Gvssd 34  
                  k +p +++l  +L+lP +++C G++s+
  KKY16853.1 1122 KKAPSKRSLIVRLKLPAAYLCgGLTSE 1148
                  556778888899*********666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.48
# Mc/sec: 8516.32
//
Query:       KKY16854.1  [L=195]
Description: putative basic helix-loop-helix dimerization region bhlh [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-05   24.4   1.7    3.6e-05   23.6   1.7    1.4  1  HLH       Helix-loop-helix DNA-binding domain
     0.0068   16.1   0.0      0.015   15.0   0.0    1.6  2  DivIC     Septum formation initiator
  ------ inclusion threshold ------
       0.34   11.6   2.7       0.52   11.0   2.2    1.6  1  IPP-2     Protein phosphatase inhibitor 2 (IPP-2)


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   1.7   6.1e-09   3.6e-05       2      46 ..      39      85 ..      38      92 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 6.1e-09
                HHHHHHHHHHHHHHHHHHHHHHHHCST..CSTTSS-STHHHHHHHHH CS
         HLH  2 raahnerErrRRdriNsaleeLrellP..slppskKlsKaeiLekAv 46
                raah   E+ RR++ +++l eL +l+P  + ++s++lsK  +  + +
  KKY16854.1 39 RAAHRVFEKGRREHFKEKLIELARLIPdlAETDSRRLSKHVVIDESI 85
                89**************************9999999****87776666 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       2.1   1.3e+04      54      62 ..      24      32 ..      11      38 .. 0.65
   2 !   15.0   0.0   2.5e-06     0.015      12      52 ..      81     121 ..      77     136 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2.1
                XXXXXXXXX CS
       DivIC 54 edyieerAR 62
                + ++++r R
  KKY16854.1 24 KKAVKKRVR 32
                444444444 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2.5e-06
                 XXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XX CS
       DivIC  12 gkkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLks 52 
                 ++ ++ + k+lk+  ++  +e+++l++e+++L +ev+ ++ 
  KKY16854.1  81 IDESIKRHKRLKSRCDTAVREIKALRQERDDLLKEVNIWRR 121
                 6778999999***************************9986 PP

>> IPP-2  Protein phosphatase inhibitor 2 (IPP-2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.2   8.7e-05      0.52      85     116 ..      27      57 ..       2      74 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.7e-05
       IPP-2  85 eeeeeedlseeeeeekrreFeekRKaHYnefk 116
                  ++   +++e ++++ +r Fe+ R++H++e  
  KKY16854.1  27 VKKRVRNFTE-NDRAAHRVFEKGRREHFKEKL 57 
                 2244455555.8899*************9754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 1268.03
//
Query:       KKY16855.1  [L=344]
Description: putative transaldolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-22   79.8   0.0    6.9e-20   71.6   0.0    2.2  1  TAL_FSA   Transaldolase/Fructose-6-phosphate aldolase


Domain annotation for each model (and alignments):
>> TAL_FSA  Transaldolase/Fructose-6-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   3.9e-24   6.9e-20      23     238 ..      39     246 ..      19     266 .. 0.85

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 3.9e-24
                 EE--HHHHHH..T...TS.-HHHHHHHHHHH........................H-S-EEEE-S-...-SHHHHHHHHHHHHTT-T..TEEEEEESSH CS
     TAL_FSA  23 vTtNPsliekaik...ykalydeaieeikkegkkvkeaydkLavedilealdllgadgrvslEVdarlsddteatieeArrlialyerenvlIKiPate 118
                  T+N   +  +++   ++++++++++e k++     ++y ++av ++++ +d++   grv l+V ++ +++ e+ ie+Ar                +t 
  KKY16855.1  39 QTSNQLWVDIQMNhpdNQEMFSKTVKEYKDK--GWLAIYTRVAVLMCKNNIDNI--RGRVLLQVLPSNAYNGEKVIEHAR----------------ITG 117
                 5677666666666777899999999999977..8999*****************..*********************998................466 PP

                 HHHHHHHHHHHTT--EEEEEE-SHHHHHHHHHHT-SEEEEBHHHHHTTT..............S-HHHHHHHHHHHHHHH.T...-.S-EEEEBS--SH CS
     TAL_FSA 119 eGikAikeLkkeGinvnvTliFsleqalaaaeagasviSpFvgRiddll.kkleek.dklkgkddgvalvkeiynyykkl.g...y.sTkvmaasfrnv 210
                   ++A+k+L++eGi++  T++F l qa+a+ +ag+ +iSp+++ + ++   +l +  ++  ++++  a + +i + yk+l +     +   ++asf ++
  KKY16855.1 118 PALAAAKTLEEEGIRTLGTALFGLPQAIACSQAGCLYISPYYNEVRAHDdLSLWPDvEDPASQHPMSARIVQILETYKRLyKetgKeQPLLKNASFISP 216
                 7899***************************************998888545555586666777888999999999988844555447779******** PP

                 HHHH..HHHT-SEEEE-HHHHHHHT--HHH CS
     TAL_FSA 211 eeve..elagcdtvTippkllealakhgkt 238
                 +e+     +gc++ Ti++ +l++lak + +
  KKY16855.1 217 KEAMaaGEMGCHSATISHTVLNELAKLQYD 246
                 **998889*****************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 2164.62
//
Query:       KKY16856.1  [L=294]
Description: putative proton myo-inositol cotransporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-27   95.8  11.9    3.7e-27   95.3  11.9    1.1  1  Sugar_tr  Sugar (and other) transporter
    1.3e-07   30.9  20.6    1.8e-07   30.5  20.6    1.1  1  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.69    8.5   4.8       0.89    8.1   4.8    1.2  1  EMP70     Endomembrane protein 70


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3  11.9   6.2e-31   3.7e-27       6     192 ..     116     289 ..     111     290 .. 0.91

  Alignments for each domain:
  == domain 1  score: 95.3 bits;  conditional E-value: 6.2e-31
                 HHHHHHHHHH.HHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-T CS
    Sugar_tr   6 alggllfgYd.tgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsve 103
                 +lg+ ++g+d tg  ga l++++   +fg   +++       l+g+i s   + +++++  a ++ +++GR+ ++  +++++v   + qa+++   +++
  KKY16856.1 116 SLGSAVQGWDnTGANGANLSFPE---EFGIADNTW-------LVGVINSGPTLFGLLSAWAADPINNKLGRRGTIFLTGLFCVFPVLAQAFTQ---NWW 201
                 67777777754677777777777...777777776.......568999999999999999*********************************...*** PP

                 GGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS- CS
    Sugar_tr 104 vlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflP 192
                  l+++R+++G+g+G+   ++P++ +E+Ap+++Rg lv+ +ql+++fGi+v+++++l++ +++    wr+ l+ +++pa+ +l++++f+P
  KKY16856.1 202 GLLLCRLFMGLGMGIKISTIPVFSAEVAPASIRGGLVTSFQLWVAFGIFVGFCSNLIFYRVGR-LAWRFQLAAAFAPAIPVLFFVWFCP 289
                 **************************************************************9.9***********************9 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5  20.6   2.9e-11   1.8e-07       3     172 ..     117     287 ..     115     292 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 2.9e-11
       MFS_1   3 laaflsalarsilgpalplalaedlgispse..igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 l+ ++ +++ + ++ a      e++gi+  +  +g + ++ +l+ ++++  + ++ +++Grr +++l+ l+ ++ +l+ +f++++w ll++r+++Glg+
  KKY16856.1 117 LGSAVQGWDNTGANGANL-SFPEEFGIADNTwlVGVINSGPTLFGLLSAWAADPINNKLGRRGTIFLTGLFCVFPVLAQAFTQNWWGLLLCRLFMGLGM 214
                 566777777777777776.67799997777755555666666666666666666666******66666666666624444878888************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.Wravfyilaivsllafvlfllll 172
                 g+ ++++ ++ a+++p + rg  +  +++ +++G+ +g     +++  +g   + f ++a+++    vlf++++
  KKY16856.1 215 GIKISTIPVFSAEVAPASIRGGLVTSFQLWVAFGIFVGFCSNLIFY-RVGrLAWRFQLAAAFAPAIPVLFFVWF 287
                 **************************************88888888.555544557777777777766666665 PP

>> EMP70  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.8   0.00015      0.89     267     349 ..     209     288 ..     177     292 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00015
       EMP70 267 lvGsGvqlllmalvtlllallgflspsnrgslltvalllyvllgliaGYvsarlyktfggekwkkn.tlltalllpgllflvff 349
                 ++G G+ + + ++ ++      +   s rg+l+t ++ l+v +g++ G++s  ++  +g   w+ + +  +a ++p+l+f+ f+
  KKY16856.1 209 FMGLGMGIKISTIPVFS---AEVAPASIRGGLVT-SFQLWVAFGIFVGFCSNLIFYRVGRLAWRFQlAAAFAPAIPVLFFVWFC 288
                 44444444443333333...34444566777766.6789****************9**96699988344567777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 1925.99
//
Query:       KKY16857.1  [L=1288]
Description: hypothetical protein UCRPC4_g05815 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1074  (0.059903); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.53
# Mc/sec: 7279.20
//
Query:       KKY16858.1  [L=479]
Description: putative aryl-alcohol dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-31  108.5   0.0      7e-31  107.7   0.0    1.4  1  GMC_oxred_C  GMC oxidoreductase
    4.2e-30  105.2   0.0    5.8e-30  104.7   0.0    1.1  1  GMC_oxred_N  GMC oxidoreductase
  ------ inclusion threshold ------
      0.013   16.0   0.6      0.031   14.8   0.6    1.6  1  DUF1010      Protein of unknown function (DUF1010)


Domain annotation for each model (and alignments):
>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.0   1.2e-34     7e-31       1     143 [.     327     466 ..     327     467 .. 0.86

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 1.2e-34
                  ----EEEEESTT-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGGTTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B-S CS
  GMC_oxred_C   1 PesrGrvtlsssdptgaplidpnylsdprdlaalvealkaarkilaaaaldvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMGa 98 
                  P srG+v+ +s +p+ +p+idp+ +++p d++ +   ++  +ki+ +a++     + + +  +e  + +  +d+   k+ ++ +l+  Hp+Gtc+M +
   KKY16858.1 327 PLSRGSVHSQSINPSTPPVIDPRVYTHPLDVEIMSLHIRFFQKITSTAPFSS-LLKPNGRRIPEFASFETLDDA--KKVATKCTLSNMHPIGTCAMLP 421
                  78**********************************************8522.233333333444444444444..778888888************* PP

                  TCGCBSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHH CS
  GMC_oxred_C  99 dpkdsVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAek 143
                  ++k +VVD++l+vhgv++Lr++DaSv+P  + +n+ +t++a+Aek
   KKY16858.1 422 EEKGGVVDARLKVHGVKGLRICDASVMPILTRGNIISTVYAVAEK 466
                  ********************************************8 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.7   0.0   9.7e-34   5.8e-30     128     295 ..      24     195 ..       6     196 .. 0.89

  Alignments for each domain:
  == domain 1  score: 104.7 bits;  conditional E-value: 9.7e-34
  GMC_oxred_N 128 ale...sdlhgvdgrlgvtekgkeesplnkallkaaeelGlpvprdlngk.hqcGvcllgv.tcrtgarqstarawLrpalerpnleiltgakaekii 220
                  al+   +d +g+ g++++ +  ++ +p  ka+++  + lG +++ d+ ++ +  G+ ++     ++g+r+ + +a+L+   +r+nl+++ +a++ek++
   KKY16858.1  24 ALDyidQDAQGKSGPIQA-SYPQTVHPFGKAWIETFRALGHEITSDTMSGtNLGGYQIVSHiDPQKGERSHAGNAYLEGSFQRKNLDFVLDAEVEKVL 120
                  3334449***********.9999*******************777776664778888888877899******************************** PP

  GMC_oxred_N 221 l.egrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkevgvdvvvdlp.vGknLqdHp 295
                  + +  +  a+GV+++++++t  ++v a kevv++ G++ sP lL+rSG+G+ + L ++gvdv++  p vG+nLqdH+
   KKY16858.1 121 FkKLPTLSATGVQYRRHGQT--FIVEALKEVVICTGSFHSPCLLERSGIGDPKLLGSLGVDVIIPNPnVGENLQDHM 195
                  *6445889************..999999************************************************8 PP

>> DUF1010  Protein of unknown function (DUF1010)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.6   5.2e-06     0.031      11      50 ..     286     325 ..     276     335 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.2e-06
     DUF1010  11 PcskglqaflassacaasatsyhscsaaPlrwPsafswaa 50 
                   s ++ +f a s c  s+ s h+  ++P +w s f   +
  KKY16858.1 286 EASVNFCMFQAQSHCDKSTLSEHFSITSPGKWASIFASLS 325
                 568899****************************997554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.51
# Mc/sec: 2844.70
//
Query:       KKY16859.1  [L=308]
Description: hypothetical protein UCRPC4_g05817 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2269.67
//
Query:       KKY16860.1  [L=684]
Description: putative isoflavone reductase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-17   63.2   0.0    4.9e-17   62.3   0.0    1.3  1  NmrA            NmrA-like family
    7.3e-15   54.7   0.1    1.8e-14   53.4   0.0    1.6  2  Fungal_trans    Fungal specific transcription factor domain
     0.0026   17.7   0.0      0.006   16.5   0.0    1.6  1  NAD_binding_10  NAD(P)H-binding


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   8.2e-21   4.9e-17      35     226 ..     399     599 ..     394     608 .. 0.90

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 8.2e-21
                 HHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GGS-HHHHHHHHHHHHHHHS.-.....SEEEEEE---GG.GT.SSS---TTTHHHHHHHH CS
        NmrA  35 elakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfyskeiedgkklvdAakeaG.v.....khfiySslgddndrsnaeepavphfdsKaeiee 127
                 ++++s  +aGv++  gd++++e +++  +g d++ s +g  ++ i  ++ l++ a+eaG       k f++S++g d  ++  +  +   +++K +++e
  KKY16860.1 399 DVIQSYRDAGVNIFVGDIENEEDVRKSYEGIDTIVSCLG--RNMIGAQTGLIQLAAEAGgGgssrrKWFFPSEFGTDI-EYGPASAKEIPHQKKLRVRE 494
                 68999**********************************..*****************9535565567**********.6666665666689******* PP

                 HHHHC..TS-EEEEEE-EEGG.....G-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHHHHHHHHHHHHHHTTEEEEE-SEEE-HHHHHH CS
        NmrA 128 yvral..gipytfvyagffme.....nflsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGafvikilkdprklkgkriklagntlsgneive 219
                  +r     + yt++++g +       +++++l + ++g+ +  ++k++llg+gn  + l  + +D+G+ ++++l +p+++ +k++k+ + t + +ei++
  KKY16860.1 495 KMRDVegLLDYTYMVTGPYGDgdaglYLSANLGEERTGSFDVRNKKAVLLGDGNFRISLA-TMKDVGKLTLAALLHPSATRNKAVKVNSFTTTDKEILA 592
                 ***9986689*********764444477888889999999999***********999998.************************************** PP

                 HHHHHHT CS
        NmrA 220 lfekkig 226
                  fek++g
  KKY16860.1 593 EFEKQTG 599
                 *****99 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0     3e-18   1.8e-14      25     187 ..      29     179 ..       2     196 .. 0.76
   2 ?   -3.0   0.0      0.47   2.8e+03     167     228 ..     372     436 ..     370     443 .. 0.72

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 3e-18
  Fungal_trans  25 ssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektssdralherhhgvav 121
                   +s+ +s  +++++++ ++++   a+ s+s+++ s+       ++ +++ l+a+++i e  +s+ s +++lq+L+ll +y++ + ++   ++++  a+
    KKY16860.1  29 ASKDPSTRDETFQFFRITMITAIAFASRSRHNPSWIV-----YDNACY-LQAAKCI-ETVTSEIS-VESLQALMLLIIYCLFRPRKGDIWKLLDYAC 117
                   5555555666666666555555555555555555333.....333444.5666777.35555555.******************************* PP

  Fungal_trans 122 rlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPc 187
                   rl+ +lg h ++   +    ++  +  +e rr ++w+ + +++++  ++Grp+ l+++  ++ +P+
    KKY16860.1 118 RLSIELGYHTEQGPAE----IEEEVTVQEKRRSTFWSLYTIERIVGQIFGRPSDLPETIFTTKYPD 179
                   ****************....7799999**************************8899888888875 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.47
  Fungal_trans 167 alklGrppllddsqinlpLPcddddlwesddaseetlvetk.....lsneeksrkiasfllaLkkil 228
                   ++ l++ + ++ s+++l+++c ++  w +d     ++ +++     ++nee  rk + ++ ++ + l
    KKY16860.1 372 SISLNNIFDISGSCLTLLMFCAEQ--WPADVIQSYRDAGVNifvgdIENEEDVRKSYEGIDTIVSCL 436
                   555666665688888888888888..88777777777776677777888888887777777776665 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     1e-06     0.006      33      75 ..     402     444 ..     397     533 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1e-06
                     HHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC.HH CS
  NAD_binding_10  33 aeleaeeglevvegdvtdvedlaealkgadaVvsalggggk.de 75 
                     ++++ ++g+++++gd++++ed+++  +g+d++vs+lg++    +
      KKY16860.1 402 QSYR-DAGVNIFVGDIENEEDVRKSYEGIDTIVSCLGRNMIgAQ 444
                     4454.699****************************97655333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 4113.79
//
Query:       KKY16861.1  [L=342]
Description: putative protocatechuatedioxygenase subunit beta [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-30  106.5   0.0    1.6e-30  106.1   0.0    1.1  1  LigB      Catalytic LigB subunit of aromatic ring-opening dio


Domain annotation for each model (and alignments):
>> LigB  Catalytic LigB subunit of aromatic ring-opening dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1   0.0     9e-35   1.6e-30       2     270 ..       7     328 ..       6     331 .. 0.87

  Alignments for each domain:
  == domain 1  score: 106.1 bits;  conditional E-value: 9e-35
        LigB   2 alllsHvppilaavdgkeqealrekvikgyesireriaeksPdtiivvsphhlt....dvnpvfvlgva.eefeaiddfg.kflprleyelkgnpeLae 94 
                 a+ lsH p  la ++ +++ + r+++ +  ++++ r+   +Pd+i+ +  +h      + +p   +g a ++ +++d+       + +  ++g+pe+ae
  KKY16861.1   7 AVGLSHAPGALAFPE-TAKPEHRASTEAATRALGMRLESAKPDVIFAFLDDHFEnffrNLSPSITMGIAdSHVGPADQWMeTLRIKEKTIFPGAPEIAE 104
                 5789**********9.6666667999999*****************999988887998666666666551566677776644455667779******** PP

        LigB  95 kiaealkksgidlavesnsmklDHG..tlvPLelmlp.dea.kvpvikvslntvaypllsferlykLGeAlrkaveel...dknvlilgsGglsHqleg 186
                 k+ ++++ +g+d+       + ++G  +l+P +lm   +++  v  +++++n+ + pl   +r y+LGeA+r ave+      + +++ +GglsH ++ 
  KKY16861.1 105 KVLSSVVHQGFDV---ARAGPCEYGnnLLMPWKLMGVeESLkDVAIVPIFINVFTPPLIPYARAYALGEAVRAAVETAlpeTLRAAFICTGGLSHWPPY 200
                 ************4...6799999997779******886444147789******9999999*****************9998899**************9 PP

        LigB 187 deaakadaq................................................tll.lneefdeelldllkegrveelckmskeelsaaagheee 236
                  ++ +   +                                                  + +n+ +d +++d+ ++g+ e +++++ ee++++agh+++
  KKY16861.1 201 WSPVQGG-DppsdpflqrikryqtegksylkqdpklfvdfddyevemaakneyplnsKHPlVNADWDRKFMDHYSKGDSEWMKNLTYEEVEEEAGHGGH 298
                 9987444.3489********************************************85556************************************** PP

        LigB 237 elvplvvalGalsgdkaelrkelvsyeglpavsa 270
                 e+  +v+++Ga++g     +++ + ye++ +++ 
  KKY16861.1 299 EVLNWVAMMGAMKG----APSKMLLYEPVIEWIC 328
                 *************9....6788888888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2597.67
//
Query:       KKY16862.1  [L=291]
Description: putative class ii aldolase adducin domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-48  165.0   0.2    2.1e-48  164.7   0.2    1.1  1  Aldolase_II  Class II Aldolase and Adducin N-terminal domain


Domain annotation for each model (and alignments):
>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.7   0.2   1.2e-52   2.1e-48       2     186 .]      47     228 ..      46     228 .. 0.94

  Alignments for each domain:
  == domain 1  score: 164.7 bits;  conditional E-value: 1.2e-52
                  HHHHHHHHHHHTTSSCTTBCEEEEEET.STTEEEEEBTSS-GGGHTGGGEEEEETTSCEEEECECSSSTB-.TTHHHHHHHHHH-TT-SEEEEE--HH CS
  Aldolase_II   2 elaeasrllarrglvegtgGniSvrvp.eedsflitpsgvdfeeltaedlvvvdldsgevvegkekggkps.setplHlaiykarpdaravvHtHspa 97 
                  +l+ a+r++a+++++eg++G+i++r+p ++++f+++++g +f+++t +dl++v  d g+v++g  k+++ + +++++H++i++arpd+ + +H+Hs++
   KKY16862.1  47 RLVLAFRIFAQFKFAEGVAGHITLRDPvDPHCFWVNAFGQHFSTITDDDLILVTED-GKVIDG-GKNRRLNyAAFAIHSEIHAARPDVICAAHSHSTY 142
                  7999*********************9899************************966.*****9.67889999************************** PP

                  HHHHHTCCSTSCHCCSSHHHHC.HSSSEEEEES-SSTTCHHH...HHHHHHHHHHS-SEEEETTTEEEEEESSHHHHHHHHHHHHHHHHHHH CS
  Aldolase_II  98 avalsalagkeglppltqeaaklllgdevpvipyaapgteel...gealaealkedakavllrnHGlltvGetleeAvalaetleeaaeiql 186
                  + a++a+  +++l++ltq+++ ++ +d+v + +++a g ++    g+++a+ l+  +ka+ll nHGlltvG+t+ee  a+++ le++++iql
   KKY16862.1 143 GRAFCAT--GRTLDMLTQDHCVFY-NDHVLY-DNFA-GLVLSsdeGKHIAQCLG-GKKAALLGNHGLLTVGKTIEEVTAWFVLLEKCCKIQL 228
                  *****98..899**********65.899999.9999.755557889*******8.779********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1967.66
//
Query:       KKY16863.1  [L=393]
Description: putative n-carbamoyl-l-amino acid [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-26   91.5   0.0      8e-26   91.0   0.0    1.2  1  Peptidase_M20  Peptidase family M20/M25/M40
    1.7e-07   31.2   0.1    3.8e-07   30.0   0.1    1.6  2  M20_dimer      Peptidase dimerisation domain
  ------ inclusion threshold ------
       0.13   12.3   0.0        5.4    7.2   0.0    2.4  2  P2             P2 response regulator binding domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.0   1.3e-29     8e-26       1     203 [.      51     378 ..      51     382 .. 0.90

  Alignments for each domain:
  == domain 1  score: 91.0 bits;  conditional E-value: 1.3e-29
                    EEEEES-BSSTTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH.HHH.T....... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.x....... RF
  Peptidase_M20   1 llgsHlDvVpeeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle.gle.e....... 87 
                    ++gsHlD++p    +g           G+++G        gvl+++e+lr l+++++++  +  ++++++EEg+r   +a+l+ g+  e       
     KKY16863.1  51 AIGSHLDTQP----TG-----------GRYDGI------LGVLCGIEVLRILHENQVTTYAPFAIVNWTNEEGAR-FPPAMLAsGVWaEefttdyg 124
                    589*******....67...........999999......*********************************876.23444444333334556677 PP

                    .............................TTCESEEEEEEEESSSBTCHSTETEEEE....................................... CS
                    .............................xxxxxxxxxxxxxxxxxxxxxxxxxxxx....................................... RF
  Peptidase_M20  88 .............................rekvdavfelhieepgileagklaigvv....................................... 115
                                                   ++ a fe+hie++++le+ +l +g v                                       
     KKY16863.1 125 qsrsdhsgitlgeelsrigylgpepcsykSIPLLAHFECHIEQGTLLEEANLPVGAVkgvqcigwynihvtgkeshcgsapmnrrhdallaaanii 220
                    8888999999999999**********9999999999************999999999*************************************** PP

                    ......................................................................EEEEEEEEEESHEEEC.CHHHHHHHH CS
                    ......................................................................xxxxxxxxxxxxxxxx.xxxxxxxxx RF
  Peptidase_M20 116 ......................................................................kvevelleggapvtln.dsplvkala 140
                                                                                           v+ve+     ++ ++ d+ +v+ ++
     KKY16863.1 221 vavnklaaegeyfekgsratiavinsepqsintiagkvqmsldvrcvtdedlkgletlisnsidgvaerhGVDVEFKNIWTSPGIDfDNLMVQCVQ 316
                    *********************************************************************7366666655555566666******** PP

                    HHHHHHHTSCEEEEEESSSBHTHHHH.TTTEEEEEEESS.GGCTTSTTTEEEHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 141 eaaeelfgekvelivsgpggtdarff.agiptvmifgpg.sglaHspnEyvdledlekgikvlar 203
                    ++a ++    +++ vs+  g+d+ +  +++pt+m+f ++ +g +H+p Ey+ +ed+++ ++v+  
     KKY16863.1 317 DSAASID--CHKTLVSS-VGHDSVYTsKRVPTAMLFTRCrDGVSHNPAEYTTPEDCAASAEVMLG 378
                    ***9962..38888***.********8888*******9956********************9976 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.1   6.3e-11   3.8e-07       6     105 ..     187     287 ..     183     291 .. 0.90
   2 ?   -3.6   0.0       1.7     1e+04      65      82 ..     354     375 ..     344     378 .. 0.64

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 6.3e-11
                 EEEEEEEEE-B-EEGG.-TTTTB-.HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-C.CCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHH CS
   M20_dimer   6 laggkitvkgkagHsg.apgagaN.AieklarllaeledeegdiaeerslprttlnvtgiegGs.aknvipdeaeakidiRllpgedpeevleeieeil 101
                 + +++i+v+gk  H g ap + +  A+ ++a ++ + +++  +   e++ +++  ++++i++   ++n+i++++++++d+R +  ed++ +++ i + +
  KKY16863.1 187 IGWYNIHVTGKESHCGsAPMNRRHdALLAAANIIVAVNKLAAE--GEYFEKGSRATIAVINSEPqSINTIAGKVQMSLDVRCVTDEDLKGLETLISNSI 283
                 679*************988777666**************9776..46****************9***************************99998877 PP

                 TSCC CS
   M20_dimer 102 ekea 105
                 + +a
  KKY16863.1 284 DGVA 287
                 6665 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.7
                 E-C....CCCEESSEEEEEEEE CS
   M20_dimer  65 gGs....aknvipdeaeakidi 82 
                  G     a  ++p+ + a+ ++
  KKY16863.1 354 DGVshnpAEYTTPEDCAASAEV 375
                 4443333666889999888766 PP

>> P2  P2 response regulator binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.029   1.7e+02      15      37 ..      19      41 ..      15      50 .. 0.88
   2 ?    7.2   0.0    0.0009       5.4      31      75 ..     242     287 ..     238     293 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.029
                HHHHHHHHHHHHHHTTEEEEEES CS
          P2 15 ksvRaflvfkaLeelgeiiksiP 37
                +  R +  f+++  +g+i+   P
  KKY16863.1 19 EETRLYGCFHKIDHMGNIFAIRP 41
                56799***************999 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0009
                 EEEEEES-HHHHHT..T-SSSEEEEEEEESS-HHHHHHHHHT.SSS-S CS
          P2  31 eiiksiPsvediee..ekfdegfevvlltkeskeeikealas.iseie 75 
                  +i+s+P  + i+   +k++ +++v ++t+e+ + +++ +++ i+ + 
  KKY16863.1 242 AVINSEP--QSINTiaGKVQMSLDVRCVTDEDLKGLETLISNsIDGVA 287
                 589****..66766669***********************99887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2522.86
//
Query:       KKY16864.1  [L=617]
Description: putative c6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.1e-18   64.4   0.0    1.4e-17   63.6   0.0    1.4  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   7.7e-22   1.4e-17      85     265 ..     244     407 ..     192     409 .. 0.74

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 7.7e-22
  Fungal_trans  85 sspssslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqi 181
                    +++++l  +q +ll+  y     + a ++ + g a+r + +lgLhr+ps +     ++ ++++   rrR++w+a++lD+ti++ l rp  ++d  i
    KKY16864.1 244 APFPNDLAGVQLTLLILQYAEINPKCANVWVLGGAAMRSCLELGLHREPSVKV----IDPDPATLDLRRRIFWMAYCLDRTICSALQRPLSIPDPAI 336
                   466778999**99999999999999*************************999....78*******************************99***** PP

  Fungal_trans 182 nlpLPcddddlwesddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlqseklswveeleraldnW 265
                   n+++P  +   + ++ ++             + +++a+ l+  ++++s +   +++ +k l   +    +++w+ ++e +l +W
    KKY16864.1 337 NTQYPFLEP-RDPHTGDALQSTT--------HESSPALHLIGYCRLQSVMTE-VHFQGKSLGFGQ---TWEDWLIDTEQSLRRW 407
                   *****8777.2222222222222........356677777777776666666.444444333333...3366666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 4072.60
//
Query:       KKY16865.1  [L=202]
Description: hypothetical protein UCRPC4_g05823 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.072   13.2   0.0       0.14   12.2   0.0    1.4  1  UPF0270        Uncharacterised protein family (UPF0270)
       0.51   10.2   0.1       0.51   10.2   0.1    2.5  3  Synaptobrevin  Synaptobrevin


Domain annotation for each model (and alignments):
>> UPF0270  Uncharacterised protein family (UPF0270)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.6e-05      0.14      14      48 ..      25      59 ..      12      62 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.6e-05
                HHHHHHHHH--------.---HHHHHHHHHHHHHT CS
     UPF0270 14 enlieefvlregtDyGeqelsleekveqvkqqLks 48
                + ++ + v+re  D+G++  + ++k+ qv + L++
  KKY16865.1 25 NVVLHHTVIRELHDQGDKLAEESNKMHQVAEDLQR 59
                4578999*************************997 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   5.7e-05      0.51      30      61 ..      30      61 ..      23      80 .. 0.88
   2 ?   -1.4   0.0      0.22     2e+03      29      52 ..      80     103 ..      74     105 .. 0.78
   3 ?   -1.1   0.9      0.19   1.7e+03      74      85 ..     184     195 ..     177     200 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 5.7e-05
                   CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHH CS
  Synaptobrevin 30 gekldeLvdktenLqssaqqFkkqarklkrkm 61
                   +  + eL+d+ ++L++++++ ++ a +l+r+ 
     KKY16865.1 30 HTVIRELHDQGDKLAEESNKMHQVAEDLQRNL 61
                   66799************************987 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.22
                    CCCCHHHHCCCCHHHHHHHHHHHH CS
  Synaptobrevin  29 rgekldeLvdktenLqssaqqFkk 52 
                     +e+++ +++k   L+++a  F++
     KKY16865.1  80 VQEEVEYIHQKYAGLAQKAGVFNT 103
                    578888899999999999988875 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.19
                    XXXXXXXXXXXX CS
  Synaptobrevin  74 lvvlililiiii 85 
                    + v+++++i+i+
     KKY16865.1 184 FWVFLVVYILIV 195
                    334444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1156  (0.0644765); expected 358.6 (0.02)
Passed bias filter:                      838  (0.0467399); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.31s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 1330.89
//
Query:       KKY16866.1  [L=889]
Description: putative brefeldin a-sensitivity protein 4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-26   90.3   0.6    1.8e-25   89.3   0.6    1.5  1  Haem_degrading  Haem-degrading
    6.1e-11   42.5   8.5    1.1e-10   41.7   8.5    1.4  1  FUSC_2          Fusaric acid resistance protein-like
    5.6e-08   32.9   0.2    1.2e-07   31.8   0.2    1.5  1  ArAE_2          Aromatic acid exporter family member 2
    2.1e-05   23.5   1.7    3.7e-05   22.8   1.7    1.3  1  ALMT            Aluminium activated malate transporter
    9.5e-05   21.1   1.9    9.5e-05   21.1   1.9    2.4  4  FUSC            Fusaric acid resistance protein family
     0.0002   21.5   2.8    0.00043   20.4   2.8    1.6  1  ArAE_1          Aromatic acid exporter family member 1
     0.0045   16.1   0.2       0.17   10.9   0.0    2.3  2  ArAE_2_N        Putative ER transporter, 6TM, N-terminal
  ------ inclusion threshold ------
      0.011   16.0   1.7      0.011   16.0   1.7    2.2  2  PMT_2           Dolichyl-phosphate-mannose-protein mannosyltr
       0.31   10.9   6.8       0.52   10.1   6.8    1.3  1  Bax1-I          Inhibitor of apoptosis-promoting Bax1
       0.67    9.0   4.0        3.5    6.6   2.4    2.8  3  FUSC-like       FUSC-like inner membrane protein yccS
       0.82    9.8   9.7        1.8    8.7   9.7    1.6  1  DUF1097         Protein of unknown function (DUF1097)
        5.5    7.5   6.5         12    6.4   6.5    1.6  1  MerC            MerC mercury resistance protein


Domain annotation for each model (and alignments):
>> Haem_degrading  Haem-degrading
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.6   1.2e-28   1.8e-25       1     119 []     743     873 ..     743     873 .. 0.91

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 1.2e-28
  Haem_degrading   1 ltledAkelgaaarakarekgkpvviaivdaggqllffarmdgaspdnedwaerKantaarfgkstaalgeklk......eedya.......grv 82 
                     l+le Ak +++a ++kar+++  ++iaivda+ +ll f r++ga+  ++++a++Ka+taa ++++t+ + e+ +      +   +       gr+
      KKY16866.1 743 LNLEGAKIVAQASEEKARAMNLGINIAIVDASTHLLHFIRTPGAKTTSINIAIDKAFTAAGHRAPTHMYMENDAfrpggpA---EgigrtngGRF 834
                     68999**************************************************************99877666666550...14556666899 PP

  Haem_degrading  83 .ilgGGvpi.rvkggvvGaigvSGlkqeeDhqvavaale 119
                      ++gGGvpi   kg v+Ga+g S +++++D +v++a++e
      KKY16866.1 835 tTIGGGVPIlNAKGYVIGAVGASSGTPAQDREVVEAGVE 873
                     9********99999**********************985 PP

>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   8.5   7.6e-14   1.1e-10      26     127 .]     332     438 ..     320     438 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 7.6e-14
      FUSC_2  26 sptlgasltravqRilGtvlGavlallllyllpgn.lalallvfll..vfliafflkrny.alafifltllalllyslaa.gsgnpieialhRlldvli 119
                    +g++++ ++ R++  ++Gav++ ++++++ gn +++a++ ++l   +l+++++++++ ++++ ++++++++l ++ + + gn +++++ R+++ ++
  KKY16866.1 332 VVKIGGNFQDLLTRVVAALIGAVWGGFAYAAANGNpYVVAVFAAILmiPMLYRYTQSSHPrSGIVGCISFTVVSLSAYYEkAEGNIVHFTWPRACAFMV 430
                 34899*****************************98777755444412677799*****9899***************9999***************** PP

      FUSC_2 120 Giliallv 127
                 Gi+ a+++
  KKY16866.1 431 GIVAAIVI 438
                 *****986 PP

>> ArAE_2  Aromatic acid exporter family member 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.2   8.3e-11   1.2e-07       6     228 ..     447     673 ..     444     673 .. 0.70

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 8.3e-11
      ArAE_2   6 akrlvrktlaktlselgdlyckvlsfaaerlenphihikaerdqirkkile..vleklaglkgllvllkfElslkGrwpskkyarlqalvs....elvq 98 
                 a+  +rk+l+++++ l+ ly +v+      l ++++ +++  d  r+ +le  ++e   ++++ll+l k E+ l+ +++ k y+ l++ ++    +lvq
  KKY16866.1 447 ARHELRKSLSSMMQHLSVLYRSVVAKYIYYL-ESEAPTSR--DVERSEMLEgrLREAFIRIRQLLALTKHEIRLRAPFNPKCYELLIEGCEgffeDLVQ 542
                 78889*******************9988855.33333333..3444444432266778889999***********************998722225555 PP

      ArAE_2  99 llarLlvvlkrle.peewlkrllrrvglldp.eliadvlavlsmasqaLktGdpLPeilpapLvkrhlellrkqlklee.seeeadslaealslellrs 194
                   ++ l    r++    +  +++++  l +   ++a +l  ++++++aLkt +p P  +p+  + r   l r +  +e+  ee++  l++ l++ +  +
  KKY16866.1 543 VRQSSLYFQPRMHrVSGLEGQIMNQALLPYRrDAVASILMDMYILAGALKTTQPVPRYMPSAALARKRLLDRMAELEEAqDEETPLGLQKTLTKGRRWA 641
                 55555666677777777788888888886641689************************9765555443444333333302344444455555555444 PP

      ArAE_2 195 edgrrfivalsialkildrlDelvlvvKglvGEk 228
                 + ++ ++  + +   i++rl +l   +K +vGEk
  KKY16866.1 642 NVYQ-YAFNV-ALTDIVERLEDLQQSTKLIVGEK 673
                 4444.44433.34579999999999999999997 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   1.7   2.5e-08   3.7e-05      55     212 ..     334     483 ..     325     497 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.5e-08
        ALMT  55 svGATlskGlnRalaTliAGglalgvselasssgkileeivigvsvFiiaalatflrliPaikarYdYgvlvflLTFclvvvsgyrt...devielAvk 150
                  +G  ++  l R++a li+ + + ++   a+       ++v++    ++aa+   + l+ + ++ +  +  v  + F +v++s y +   +++++ +  
  KKY16866.1 334 KIGGNFQDLLTRVVAALIGAVWGGFAYAAANGN-----PYVVA----VFAAILMIPMLYRYTQSSHPRSGIVGCISFTVVSLSAYYEkaeGNIVHFTWP 423
                 577777777778777777777666655444433.....33332....233344444444444455566899**************75222689****** PP

        ALMT 151 RfltiaiGaliclivsifvfPiwaGedLhklvaknleklakslegcvdeyleekekerkile 212
                 R    ++G++ +++++ +++P  a  +L k++++ +++l+     +v++y+   e+e    +
  KKY16866.1 424 RACAFMVGIVAAIVINWIIWPFVARHELRKSLSSMMQHLSVLYRSVVAKYIYYLESEA--PT 483
                 **************************************************99888883..33 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2      0.98   1.5e+03     165     233 ..      15      81 ..       2     181 .. 0.61
   2 ?   -3.4   0.0       1.7   2.5e+03     220     266 ..     213     259 ..     210     284 .. 0.76
   3 !   21.1   1.9   6.4e-08   9.5e-05     403     527 ..     345     478 ..     339     524 .. 0.67
   4 ?   -1.9   0.3      0.59   8.8e+02     584     605 ..     603     622 ..     553     673 .. 0.47

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.98
        FUSC 165 llrdalalaaaalageegaeareaararlaadilalealrsqaayesprirararalrrllsrmlalla 233
                 +l++a + +++al+  +++++  + r++l   i+ l++++  ++++ + +r r   ++ +++ ++ +++
  KKY16866.1  15 ALHRAFNEIEKALSLPRKDDR--DVRRTLSWHITNLSDAVRDLTLDFSITRFRPSDIQTIRNLLQGVIR 81 
                 444455555555555555444..4556666666666666666665555554444444444444444333 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.7
        FUSC 220 alrrllsrmlallallsslarllarlraeeaaavpelaallaelaal 266
                  +r   +r+lal + +s + +   +l++ + + v++l+ + a++++ 
  KKY16866.1 213 PIRLVAGRILALAQKVSQMKSSKWALHRPSYPFVKALSRTNAQVRHD 259
                 67888899999999999999999999999999988888888888774 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 6.4e-08
        FUSC 403 tllavlaallllfvvlPhvdgfplLvlvlapplll....gglllarprlagiglglavffalllapqnamtydfatfl.nsalAlllGvllaavvfrli 496
                  ++a+l+++++  + + +++g p  v+v+a++l++      +  ++pr  gi+  +++++++l+a  + ++ ++++f   +a+A+++G+++a+v+  +i
  KKY16866.1 345 RVVAALIGAVWGGFAYAAANGNPYVVAVFAAILMIpmlyRYTQSSHPRS-GIVGCISFTVVSLSAYYEKAEGNIVHFTwPRACAFMVGIVAAIVINWII 442
                 5788888888888888888887766666654444311104444455554.4455577777888888999999999996369999999999999999999 PP

        FUSC 497 rpvsaewlarrllralrrdlaraasrpaae.....a 527
                 +p+ a++  r+ l ++ ++l  + +   a+     +
  KKY16866.1 443 WPFVARHELRKSLSSMMQHLSVLYRSVVAKyiyylE 478
                 999999999999999999998777766666555533 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.59
        FUSC 584 earaaldavlaalafrapaaar 605
                 +a+ a +++l+++a  + ++a+
  KKY16866.1 603 SAALARKRLLDRMA--ELEEAQ 622
                 33333333333333..111111 PP

>> ArAE_1  Aromatic acid exporter family member 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   2.8   2.9e-07   0.00043      36     140 ..     328     441 ..     318     442 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.9e-07
      ArAE_1  36 ailsiqptkkrslrtalerllasvlaliiavvffel.lGykpiviglvlllfipltvklkle....egiv....vssVlvlhllesksislal.llnel 124
                 ail++ + +   ++  l r++a +++++ + ++ ++  G+  +v  ++++l+ip++++   +    +giv     ++V + +++e+ + +++   + + 
  KKY16866.1 328 AILTVVK-IGGNFQDLLTRVVAALIGAVWGGFAYAAaNGNPYVVAVFAAILMIPMLYRYTQSshprSGIVgcisFTVVSLSAYYEKAEGNIVHfTWPRA 425
                 4444433.345688899***********98666555056666666667899****998865422335554222267888899999999999997899** PP

      ArAE_1 125 llilvGigvallvNly 140
                   ++vGi++a+++N +
  KKY16866.1 426 CAFMVGIVAAIVINWI 441
                 **************76 PP

>> ArAE_2_N  Putative ER transporter, 6TM, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00011      0.17     274     312 ..      44      82 ..      31     113 .. 0.88
   2 ?    2.8   0.1     0.032        49     201     240 ..     427     466 ..     353     515 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
    ArAE_2_N 274 lypkleaelaflplEfsigrfsaedvkelrstlrrliss 312
                 ++ +l+ ++  l l+fsi+rf + d++++r  l+ +i +
  KKY16866.1  44 HITNLSDAVRDLTLDFSITRFRPSDIQTIRNLLQGVIRA 82 
                 667888888999*********************999876 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.032
    ArAE_2_N 201 PmgiglalkvvvsllifPttssfqvlktmlkllkllkkal 240
                 ++ +g+   +v++ +i+P+  ++ + k+++++++ l+++ 
  KKY16866.1 427 AFMVGIVAAIVINWIIWPFVARHELRKSLSSMMQHLSVLY 466
                 5778888889999999**************9999998765 PP

>> PMT_2  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.0   1.7   7.4e-06     0.011      35     116 ..     328     409 ..     325     412 .. 0.90
   2 ?   -0.0   0.6       0.6     9e+02      24      45 ..     427     448 ..     423     477 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.4e-06
       PMT_2  35 tilllyllarrlfgkraallaalllavvplfvalsalftpdaplvllwalalylllraleknklkywllagvlfGlgflsKy 116
                 +il + ++  ++ +  + ++aal+ av   f++ +a+++p+++ v++ +l++ +l+r++++  ++  ++  ++f++  ls y
  KKY16866.1 328 AILTVVKIGGNFQDLLTRVVAALIGAVWGGFAYAAANGNPYVVAVFAAILMIPMLYRYTQSSHPRSGIVGCISFTVVSLSAY 409
                 6777778888877788899**********9***************************************9999999988877 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.6
       PMT_2  24 irlvsalagvltilllyllarr 45 
                 +++v ++a+++ +++++  + r
  KKY16866.1 427 AFMVGIVAAIVINWIIWPFVAR 448
                 5678888899999999877665 PP

>> Bax1-I  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   6.8   0.00035      0.52      45     145 ..     347     443 ..     326     476 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00035
      Bax1-I  45 ilaplalvflslsaarlkkkssalalallllftlleGlslspillvytgaiilqaflltaaifgglslyalttkr..dls.glggflfagligliiasl 140
                 + a +++v++ ++  ++  + ++      ++ ++++++++ p+l+ yt+++  +  ++ ++ f ++sl a++ k   ++  +  + ++a ++g+++a +
  KKY16866.1 347 VAALIGAVWGGFA--YAAANGNP------YVVAVFAAILMIPMLYRYTQSSHPRSGIVGCISFTVVSLSAYYEKAegNIVhFTWPRACAFMVGIVAAIV 437
                 4445555553322..22222333......6788999*************************************88666665778888899999999999 PP

      Bax1-I 141 vnlF.l 145
                 +n++ +
  KKY16866.1 438 INWIiW 443
                 996522 PP

>> FUSC-like  FUSC-like inner membrane protein yccS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       0.3   4.4e+02     240     279 ..      15      54 ..       9      59 .. 0.87
   2 ?   -1.3   0.1      0.62   9.3e+02      58      87 ..     328     358 ..     326     364 .. 0.85
   3 ?    6.6   2.4    0.0023       3.5      70     123 ..     420     476 ..     342     519 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.3
   FUSC-like 240 rleraleeleqslellakqnnekekellaalrallrnLrt 279
                 +l+ra++e+e++l+l +k ++ ++++l +++ +l + +r 
  KKY16866.1  15 ALHRAFNEIEKALSLPRKDDRDVRRTLSWHITNLSDAVRD 54 
                 689************9999999999999999999888776 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.62
   FUSC-like  58 aiytmlgasqep.eiwqqplllllGalwYgl 87 
                 ai+t+ + + +  +++ + ++ l+Ga+w g+
  KKY16866.1 328 AILTVVKIGGNFqDLLTRVVAALIGAVWGGF 358
                 899999998876699*************776 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0023
   FUSC-like  70 eiwqqplllllGalwYgllsllwsllfpnrpvqqsLaelfealAdYle...aKaslf 123
                   w ++ ++++G +  ++++++++ + +++++++sL+ +++ l+   +   aK+ ++
  KKY16866.1 420 FTWPRACAFMVGIVAAIVINWIIWPFVARHELRKSLSSMMQHLSVLYRsvvAKYIYY 476
                 5799999************************************98765222466555 PP

>> DUF1097  Protein of unknown function (DUF1097)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   9.7    0.0012       1.8      35     140 ..     334     437 ..     327     442 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0012
     DUF1097  35 aaGggkkgllkslltnllGvvwAllaillisllggnlgllalllvvgivaflmvllakipllsfiPaiflGlastfatllktava.....lsnpllavi 128
                  +Gg+ ++ll+ +++ l+G+vw+ +a  +++  +        +++v++ ++++ +l ++   s+  + ++G++s+  + l   ++     + + +   +
  KKY16866.1 334 KIGGNFQDLLTRVVAALIGAVWGGFAYAAANGNPY-------VVAVFAAILMIPMLYRYTQSSHPRSGIVGCISFTVVSLSAYYEkaegnIVHFTWPRA 425
                 579*********************99998888544.......436666666666677777778999999999998887777666684444555555555 PP

     DUF1097 129 vslllGavfGyl 140
                 +++++G+v +++
  KKY16866.1 426 CAFMVGIVAAIV 437
                 556666665555 PP

>> MerC  MerC mercury resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   6.5    0.0082        12      21     112 ..     348     439 ..     342     443 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0082
        MerC  21 llallpllglsflasellhqvllilvvaigllalvvgyrrhrktsvlvlgalGllillvalflgteaeetllfgslwqvltvlGaalLaiah 112
                  +++ +++g ++ a+     +++++++ai ++ +++ y++   ++  ++g+++++++ +++++++ + + ++f +  +  +++G++  ++++
  KKY16866.1 348 AALIGAVWGGFAYAAANGNPYVVAVFAAILMIPMLYRYTQSSHPRSGIVGCISFTVVSLSAYYEKAEGNIVHFTWPRACAFMVGIVAAIVIN 439
                 345667888877889999999*******************************************7677777999999999999988766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (889 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.47
# Mc/sec: 5730.26
//
Query:       KKY16867.1  [L=1034]
Description: putative kinesin light chain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-49  163.5   9.0      4e-09   36.1   0.0    6.8  6  TPR_10     Tetratricopeptide repeat
      1e-35  121.9  20.1    1.1e-11   44.8   0.1    5.7  6  TPR_12     Tetratricopeptide repeat
    1.3e-09   37.7   0.0      4e-09   36.0   0.0    1.7  2  NB-ARC     NB-ARC domain
      4e-05   23.0   0.0     0.0002   20.7   0.0    2.2  1  PNP_UDP_1  Phosphorylase superfamily
    0.00049   19.9   0.4       0.58    9.8   0.0    3.4  3  RPN7       26S proteasome subunit RPN7
     0.0025   18.2   0.0     0.0077   16.6   0.0    1.9  1  AAA_16     AAA ATPase domain
     0.0033   17.4   3.7        8.6    6.8   0.0    4.9  5  TPR_2      Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.01   16.1   0.0      0.052   13.8   0.0    2.2  1  AAA_22     AAA domain
      0.013   16.0   2.2          9    6.9   0.3    4.0  4  TPR_19     Tetratricopeptide repeat
      0.025   14.4   0.1       0.17   11.7   0.0    2.6  3  TPR_1      Tetratricopeptide repeat
      0.055   13.4   0.0       0.13   12.1   0.0    1.7  1  NACHT      NACHT domain
       0.12   12.3   0.0       0.21   11.5   0.0    1.4  1  ATPase_2   ATPase domain predominantly from Archaea
       0.12   12.5   6.2        2.1    8.6   0.0    4.8  6  TPR_7      Tetratricopeptide repeat
       0.17   12.2   3.1        2.8    8.4   0.1    3.7  3  PPR        PPR repeat
       0.22   12.2   5.7    1.4e+02    3.4   0.0    5.9  7  TPR_6      Tetratricopeptide repeat
       0.23   11.8   7.1        7.8    7.0   0.1    4.7  5  TPR_8      Tetratricopeptide repeat
        1.8    9.2   4.4         20    5.9   0.1    3.9  3  TPR_17     Tetratricopeptide repeat
        5.2    7.8   7.9         36    5.1   0.3    4.5  4  TPR_16     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.3   2.4e-10   2.4e-07       1      41 [.     757     797 ..     757     798 .. 0.96
   2 !   29.1   0.1   6.3e-10   6.3e-07       1      42 []     799     840 ..     799     840 .. 0.98
   3 !   24.1   0.0   2.2e-08   2.2e-05       1      42 []     841     882 ..     841     882 .. 0.97
   4 !   22.7   0.5   6.5e-08   6.5e-05       2      42 .]     884     924 ..     883     924 .. 0.97
   5 !   36.1   0.0     4e-12     4e-09       1      42 []     925     966 ..     925     966 .. 0.99
   6 !   20.5   0.0   3.1e-07    0.0003       1      42 []     967    1008 ..     967    1008 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 2.4e-10
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 ++++l  La a+ + +r++eA++ll+ ++ +rr+llG+ H 
  KKY16867.1 757 WLRILEKLALAYAENYRRQEAVNLLRGVVIVRRKLLGNSHF 797
                 899999********************************995 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 6.3e-10
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t++++n Lan +++ g+y+eA+++ e +++ r+++lG +H+d
  KKY16867.1 799 TLRAMNSLANSYSSIGDYNEALRMTEMVVEEREKTLGGNHRD 840
                 89**************************************98 PP

  == domain 3  score: 24.1 bits;  conditional E-value: 2.2e-08
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t+ss  NLa++  + gr +eA++ le++la+++++lG + Pd
  KKY16867.1 841 TLSSKYNLAVRFGDIGRPKEALKRLEDVLATQEATLGGNDPD 882
                 89999********************************99998 PP

  == domain 4  score: 22.7 bits;  conditional E-value: 6.5e-08
      TPR_10   2 AsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 ++s+n Lan++ ++g+ d A++l+e +l+ r  +lG  HP+
  KKY16867.1 884 LRSMNSLANYYGETGQCDLARQLAELVLRDRTNALGGYHPE 924
                 68**********************************99996 PP

  == domain 5  score: 36.1 bits;  conditional E-value: 4e-12
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t+ +++NLa+   ++g+ +eA+al+e+a+++r+ +l  +HPd
  KKY16867.1 925 TLGTMHNLAIWKGKVGQNEEALALMEKAVQRRKVTLSKEHPD 966
                 899**************************************9 PP

  == domain 6  score: 20.5 bits;  conditional E-value: 3.1e-07
      TPR_10    1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42  
                  t++s+  L+ +++++gr ++A + +e + ++r+r+lG  HPd
  KKY16867.1  967 TLRSMFSLSLYYQEMGRTADAWRVMESVAEARKRILGKTHPD 1008
                  67777789*********************************9 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.5   5.5e-10   5.5e-07       4      70 ..     759     825 ..     758     832 .. 0.93
   2 !   20.3   0.0   5.1e-07   0.00051      31      76 ..     828     873 ..     824     874 .. 0.92
   3 !   36.4   0.3   4.8e-12   4.8e-09       8      73 ..     847     912 ..     841     916 .. 0.90
   4 !   36.4   2.0   4.8e-12   4.8e-09       3      73 ..     884     954 ..     882     955 .. 0.95
   5 !   44.8   0.1   1.1e-14   1.1e-11       4      76 ..     927     999 ..     924    1000 .. 0.94
   6 ?    3.0   0.0      0.13   1.3e+02      27      51 ..     992    1016 ..     989    1017 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 5.5e-10
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlellee 70 
                 ++l +la+++++  r +eA  ll+ ++ ++r+llG  h +t+++++ L+  y+  g+y eAl++ e 
  KKY16867.1 759 RILEKLALAYAENYRRQEAVNLLRGVVIVRRKLLGNSHFETLRAMNSLANSYSSIGDYNEALRMTEM 825
                 57779*********************************************************98665 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 5.1e-07
      TPR_12  31 eiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 e ++++lG++h +t+++ +nL+  +   gr++eAl++le++la  e
  KKY16867.1 828 EEREKTLGGNHRDTLSSKYNLAVRFGDIGRPKEALKRLEDVLATQE 873
                 557899************************************9766 PP

  == domain 3  score: 36.4 bits;  conditional E-value: 4.8e-12
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 nla+     gr  eAl+ le +l+ ++++lG++ p+++++++ L+ +y ++g+ + A++l e +l+
  KKY16867.1 847 NLAVRFGDIGRPKEALKRLEDVLATQEATLGGNDPDALRSMNSLANYYGETGQCDLARQLAELVLR 912
                 666667778***************************************************998876 PP

  == domain 4  score: 36.4 bits;  conditional E-value: 4.8e-12
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 ++++n la+ + + g++d A++l e +l+ ++++lG++hp+t+ t++nL+++  + g+ eeAl+l e+a++
  KKY16867.1 884 LRSMNSLANYYGETGQCDLARQLAELVLRDRTNALGGYHPETLGTMHNLAIWKGKVGQNEEALALMEKAVQ 954
                 667878**************************************************************986 PP

  == domain 5  score: 44.8 bits;  conditional E-value: 1.1e-14
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                  +++nla    + g+ +eAl+l eka+++++ +l ++hp+t+++++ L+ +y+++gr+++A++  e + ++++
  KKY16867.1 927 GTMHNLAIWKGKVGQNEEALALMEKAVQRRKVTLSKEHPDTLRSMFSLSLYYQEMGRTADAWRVMESVAEARK 999
                 5677***********************************************************9999988876 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.13
      TPR_12   27 ekaleiarrllGpdhpltattlrnL 51  
                  e + e+++r+lG++hp+t  ++++L
  KKY16867.1  992 ESVAEARKRILGKTHPDTKKSYQTL 1016
                  5678999**************9987 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0     4e-12     4e-09      24     228 ..     372     560 ..     361     583 .. 0.80
   2 ?   -2.6   0.0       2.4   2.4e+03     160     191 ..     941     972 ..     930     998 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 4e-12
                 EEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEEEEESXXHHHHHHHXXHHHHHCCCTTSSSS-STTSHHHHHHHHCCCT.TEEEEEEEE-SHHHH... CS
      NB-ARC  24 alvGmgGvGKttlakqilnksdevegrFdsvawvvvsktdkseeiletilkeLslseddleekeeveslkrklvrlLltk.rfllvlDDVweeedwdki 121
                  ++G gG GKt l  +  ++    ++ F ++ wv  s   ++e+ + ti+k+ + +       +      +++ r L ++ r+ l++ D  +  ++ ++
  KKY16867.1 372 VIHGEGGRGKTELCLKFAEQ---NRELFWGIFWVDASSRRSIERGFATIAKDCKVE-------Q----DVDMVKRWLSNRpRVWLLIFDNADDMKL-NL 455
                 59***********9988777...6668********************999998444.......2....3568899999999765555555666677.89 PP

                 ..HHHHCHTTSEEEEEESBCCCCCCS-S-EEEEEESS--HHHHHHHHHHCCTS-GGCHH....CHHHHHHHHHHCTT-HHHHHHHHHHHC-T.CSCCHH CS
      NB-ARC 122 gvvlparenrlrvllTTRdeevanavsatsekievelLekdeawellenkvfekkleekes..leevakeivekckGlPlalkvlggllstk.ktveew 217
                 +  +p    r  +l+TTRd++ + ++      +e+  L   +a +ll +   ++   + ++   +  a+ +v + + +Pla++ +g++++    t+e+ 
  KKY16867.1 456 SRYFP-VGDRGMILITTRDNNACTYATV--GHHELGQLAMGDAVTLLLKTIGPAITTNVSDssRQTHAQAVVASYECSPLAIANVGAVIRNSsYTIEQ- 550
                 9****.999999***********99998..899*************999988876555444348889999******************9977545544. PP

                 HHHHHHHHCTG CS
      NB-ARC 218 kkvlekleskl 228
                  ++++++e+ +
  KKY16867.1 551 -YINKHIEPGQ 560
                 .4555555544 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.4
                 -HHHHHHHHHHCCTS-GGCHH..CHHHHHHHH CS
      NB-ARC 160 ekdeawellenkvfekkleekesleevakeiv 191
                 +++ea+ l+e+ v ++k+  +++ ++ ++++ 
  KKY16867.1 941 QNEEALALMEKAVQRRKVTLSKEHPDTLRSMF 972
                 57899999999999999888877777777765 PP

>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0     2e-07    0.0002       2     233 ..      14     302 ..      13     303 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2e-07
                 EEEEESSH...HHHHHHHHHEEEEEEEEEE..TTEEEEEEEETTEEEEEEE--...SSHHHHH.HHHHHHHHHHC.--SEEEEEEEEEES......... CS
   PNP_UDP_1   2 iaiivgsp...gevellaespleetpfgre.grgfkfvtGtlkgkpvvivstG...iGkpnaa.vvaeirllkef.gvkaiiriGtaGgl......... 82 
                 +ai+++ +     v+l+++    +tp++++     +++ G++ g++vviv       G  +a+  v++++    f +v + + +G+ Ggl         
  KKY16867.1  14 VAIVCPLAielSAVRLMLDA-RHQTPYFDTkDDDNHYTCGSMFGHNVVIVNLPqwkNGLISAShLVNPLHRT--FpNVQVTLLVGIGGGLpsikplqqp 109
                 57777777556555555566.778888888667778888999999999999998777888888444444433..3479999999999999888888877 PP

                 STTT-TT-EEEEEE......EEESSSCCGCCTHHCC.................................................TCCCCTTSSEE--H CS
   PNP_UDP_1  83 npdlkvGDvvipdd......ainfdgrsplygpkee.................................................gqyfpdsydapadp 126
                 n+++++GDvvi  d      ++++ g+++ +  +++                                                 ++   + +   a+ 
  KKY16867.1 110 NENIRLGDVVIGWDgdksqaIVQWNGGRKGRILPQPdrrilniltkmesnqqlgeaklhehlkrctnamfsfpgrqydrlyetsySHTSTQDTSC-ANC 207
                 88888******999777776677666666555444478899999996666666666666666666666655554444444444332222222222.233 PP

                 HHHHHHHHCHHTTT.TTEEEEEEEEESESS-CHHHHHHHHHHTC-CEEESSHHHHHHHHHHTT--EEEEEEEEETTTBETTCTCH.HCCCHHHHHHHHH CS
   PNP_UDP_1 127 elrallkeaaealg.ikvhrGvvatadgfyaeteaelrllrrlgadaveMEtaavaqlArelgipfaairvvsdlaaggadaeatheeveefaqeaakn 224
                 + ++++ +a ++++  ++h G++++++ ++   e ++r+  +  a ++eME+a ++         +++ir++sd+a+           +    + aa +
  KKY16867.1 208 DPVHAISRASRKTNdFQLHLGPIVSVEHVVTTAETRDRIRDETHALCIEMEAAGILE-----RKNCLVIRGISDYADS--------HKNDVWKPYAAAT 293
                 334444443333338*************************************99863.....4689999***996666........4555555566666 PP

                 HHHHHHHHH CS
   PNP_UDP_1 225 aaalllall 233
                 aa +++++l
  KKY16867.1 294 AASVAREFL 302
                 666666665 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00058      0.58      34     104 ..     798     870 ..     793     875 .. 0.79
   2 ?    3.2   0.0     0.063        63      14      61 ..     860     909 ..     857     919 .. 0.74
   3 ?    3.8   0.0     0.041        41      48      93 ..     938     985 ..     924    1024 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00058
                 HHHHHHHHHHHHHHHCT-HHHHHHHHHTCCCC..--SHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHCSSS CS
        RPN7  34 eirrakldlaehYlkigdleeAlkaysrirey..ctslkhkidmllnlirvaiffndwdlvskylekakelle 104
                 e+ ra++ la+ Y +igd++eAl++ + ++e+   t  +++ d l +   +a+ f+d++  ++ l++++++l 
  KKY16867.1 798 ETLRAMNSLANSYSSIGDYNEALRMTEMVVEEreKTLGGNHRDTLSSKYNLAVRFGDIGRPKEALKRLEDVLA 870
                 7889*********************999665411344477888888888888888888888888888877766 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.063
                 HHHHHHHHHHHHHHHTT-..HHHHHHHHHHHHHHHHHCT-HHHHHHHHHT CS
        RPN7  14 keleeLdaelkdakenlg..keeirrakldlaehYlkigdleeAlkaysr 61 
                 + l++L+  l   + +lg  + +  r ++ la++Y ++g+++ A ++ + 
  KKY16867.1 860 EALKRLEDVLATQEATLGgnDPDALRSMNSLANYYGETGQCDLARQLAEL 909
                 567777777777777776224567899****************9888776 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.041
                 HCT-HHHHHHHHHT..CCCC--SHHHHHHHHHHHHHHHHHTT-HHHHH CS
        RPN7  48 kigdleeAlkaysr..ireyctslkhkidmllnlirvaiffndwdlvs 93 
                 k+g+ eeAl+++++   r ++t +k + d l ++  +++++++++   
  KKY16867.1 938 KVGQNEEALALMEKavQRRKVTLSKEHPDTLRSMFSLSLYYQEMGRTA 985
                 677778888888874446677778888888888888888887765444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   7.7e-06    0.0077       1      50 [.     342     394 ..     342     451 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 7.7e-06
      AAA_16   1 rlvGReeeleqL.lsalervrsgrp..elvllsGesGvGKsslvrellralek 50 
                 ++ GRe+ leq+ +s++ + +++++  +  +++Ge G GK+ l  +++++ ++
  KKY16867.1 342 QFTGREKLLEQIrESYFPANARPSSsqRRYVIHGEGGRGKTELCLKFAEQNRE 394
                 799*********7777764444444679999*************999975544 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.3      0.43   4.3e+02       4      24 ..     761     781 ..     759     784 .. 0.87
   2 !    6.8   0.0    0.0086       8.6       3      22 ..     802     821 ..     800     831 .. 0.86
   3 ?    0.1   0.0       1.2   1.2e+03       5      28 ..     846     869 ..     844     873 .. 0.83
   4 ?    4.8   0.0     0.036        36       8      29 ..     933     954 ..     928     957 .. 0.79
   5 ?   -2.6   0.0       8.3   8.2e+03       5      20 ..     972     987 ..     970     987 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.43
       TPR_2   4 lynlGlayyklgdyeeAleaf 24 
                 l  l+lay+++ + +eA++++
  KKY16867.1 761 LEKLALAYAENYRRQEAVNLL 781
                 7789*************9876 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0086
       TPR_2   3 alynlGlayyklgdyeeAle 22 
                 a + l+++y   gdy+eAl+
  KKY16867.1 802 AMNSLANSYSSIGDYNEALR 821
                 7889**************97 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.2
       TPR_2   5 ynlGlayyklgdyeeAleafekAl 28 
                 ynl+      g+++eAl+ +e +l
  KKY16867.1 846 YNLAVRFGDIGRPKEALKRLEDVL 869
                 7888888889*******9888777 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.036
       TPR_2   8 GlayyklgdyeeAleafekAle 29 
                 +    k g+ eeAl+++ekA++
  KKY16867.1 933 AIWKGKVGQNEEALALMEKAVQ 954
                 5555577999**********98 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 8.3
       TPR_2   5 ynlGlayyklgdyeeA 20 
                 + l l y ++g+ ++A
  KKY16867.1 972 FSLSLYYQEMGRTADA 987
                 6788999999999887 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.3e-05     0.052       4     103 ..     367     451 ..     362     461 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.3e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevv....fvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiD 98 
                 +++  v++Ge G GKT l+ +++eq+          +e++     v+++s  s +  +  ++++ +          e+ ++++ + l++r ++ lli D
  KKY16867.1 367 SQRRYVIHGEGGRGKTELCLKFAEQN----------RELFwgifWVDASSRRSIERGFATIAKDCK---------VEQDVDMVKRWLSNRPRVWLLIFD 446
                 567789*******************6..........444423223333333333333333333333.........356667777777777777888888 PP

      AAA_22  99 Eaqhl 103
                 +a+ +
  KKY16867.1 447 NADDM 451
                 88877 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.7   2.7e+03      15      49 ..     745     782 ..     744     790 .. 0.75
   2 ?    3.1   0.0      0.14   1.4e+02       8      54 ..     775     829 ..     768     833 .. 0.66
   3 ?    6.9   0.3    0.0091         9       5      55 ..     856     914 ..     855     919 .. 0.83
   4 ?    2.3   0.0      0.25   2.5e+02       5      51 ..     940     994 ..     938    1000 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.7
      TPR_19  15 eqalqedpknaearl...lLAeallalgqldeAealLd 49 
                 ++++++d  n+e +     LA a+ ++ + +eA +lL 
  KKY16867.1 745 RRIFEDDKSNPEWLRileKLALAYAENYRRQEAVNLLR 782
                 66777777777777755566888888888888888885 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.14
      TPR_19   8 aeAlalleqal......qedpknaearl..lLAeallalgqldeAealLdalpee 54 
                 +eA++ll+ +         + + + +r+   LA+ + + g+++eA ++ + + ee
  KKY16867.1 775 QEAVNLLRGVVivrrklLGNSHFETLRAmnSLANSYSSIGDYNEALRMTEMVVEE 829
                 56666666644222222336665555554478*************9998888776 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0091
      TPR_19   5 gdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealLdalpeed 55 
                 g++ eAl++le +l+         dp+ ++    LA+ + ++gq d A++l + ++++ 
  KKY16867.1 856 GRPKEALKRLEDVLATqeatlggnDPDALRSMNSLANYYGETGQCDLARQLAELVLRDR 914
                 899*********99665688877788888888899**************9988777665 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.25
      TPR_19   5 gdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealLdal 51 
                 g+ +eAlal+e+a q          p+ ++    L   + ++g++++A ++++ +
  KKY16867.1 940 GQNEEALALMEKAVQRrkvtlskeHPDTLRSMFSLSLYYQEMGRTADAWRVMESV 994
                 788999*****99966555553334444444445555555566666666666555 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00017      0.17       2      29 ..     801     828 ..     800     832 .. 0.85
   2 ?   -3.0   0.0         8   7.9e+03       5      22 ..     846     863 ..     845     863 .. 0.75
   3 ?   -2.1   0.0         4     4e+03      13      29 ..     938     954 ..     937     956 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALe 29 
                 +a + l+n y + g+y+eAl   e ++e
  KKY16867.1 801 RAMNSLANSYSSIGDYNEALRMTEMVVE 828
                 57899***************87776665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8
                 HHHHHHHHHTT-HHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAle 22 
                 ynl++ +   g+++eAl+
  KKY16867.1 846 YNLAVRFGDIGRPKEALK 863
                 666666677899999986 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 4
                 HTT-HHHHHHHHHHHHH CS
       TPR_1  13 klgkydeAleyyekALe 29 
                 k g+ +eAl+  ekA++
  KKY16867.1 938 KVGQNEEALALMEKAVQ 954
                 56899999998888876 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013      0.13       2      97 ..     370     455 ..     369     481 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEEEEEE-STT-SS-T CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlpepaapvsevwavllelperlLlilDglDelvtdl 97 
                   +++Ge G GKT L  k+a+    ++ +   f  +F++  ++++ ++  r++a+ ++++ ++ +++v+ v   l  +p+  Lli+D +D+++  l
  KKY16867.1 370 RYVIHGEGGRGKTELCLKFAE----QNREL--FWGIFWVDASSRRSIE--RGFAT-IAKD-CKVEQDVDMVKRWLSNRPRVWLLIFDNADDMKLNL 455
                 679**********88766654....44333..6778999988888886..56665.5554.5567777788899999999999*******998655 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00021      0.21      17      71 ..     365     423 ..     343     460 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00021
    ATPase_2  17 repneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefie....e 71 
                 +++++ y+i G  g GKt L  +++e+ +++   +++++a +++si++   +i+     
  KKY16867.1 365 SSSQRRYVIHGEGGRGKTELCLKFAEQNRELFWGIFWVDASSRRSIERGFATIAkdckV 423
                 4556779***********************9999**********999988887765532 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2       6.7   6.7e+03       5      23 ..     764     782 ..     761     784 .. 0.77
   2 ?    8.6   0.0    0.0021       2.1       2      21 ..     803     822 ..     802     832 .. 0.86
   3 ?   -0.2   0.0       1.4   1.4e+03       4      28 ..     847     871 ..     846     878 .. 0.82
   4 ?   -2.2   0.1       5.8   5.8e+03       2      24 ..     887     909 ..     886     916 .. 0.76
   5 ?    2.6   0.0      0.17   1.7e+02       2      27 ..     929     952 ..     928     958 .. 0.88
   6 ?   -2.1   0.0       5.2   5.2e+03       8      30 ..     977     999 ..     971    1005 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 6.7
       TPR_7   5 LarlysrlGdyeeAielye 23 
                 La +y +  +++eA+ l++
  KKY16867.1 764 LALAYAENYRRQEAVNLLR 782
                 7778888888999998875 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0021
       TPR_7   2 LlnLarlysrlGdyeeAiel 21 
                  + La+ ys+ Gdy eA++ 
  KKY16867.1 803 MNSLANSYSSIGDYNEALRM 822
                 689**************986 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.4
       TPR_7   4 nLarlysrlGdyeeAielyeqsLal 28 
                 nLa+ + + G+ +eA++ +e +La+
  KKY16867.1 847 NLAVRFGDIGRPKEALKRLEDVLAT 871
                 777778889***********98876 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 5.8
       TPR_7   2 LlnLarlysrlGdyeeAielyeq 24 
                  + La+ y + G+ + A +l e 
  KKY16867.1 887 MNSLANYYGETGQCDLARQLAEL 909
                 57899999999999988877666 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.17
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLa 27 
                  +nLa +  ++G+ eeA+ l e+  a
  KKY16867.1 929 MHNLAIWKGKVGQNEEALALMEK--A 952
                 689999999************99..5 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 5.2
       TPR_7   8 lysrlGdyeeAielyeqsLaltk 30 
                  y+++G++++A ++ e + + +k
  KKY16867.1 977 YYQEMGRTADAWRVMESVAEARK 999
                 59999*99999777666555555 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0028       2.8       3      26 ..     803     826 ..     801     830 .. 0.86
   2 ?    1.2   0.0      0.56   5.6e+02       2      22 ..     886     906 ..     885     913 .. 0.89
   3 ?    0.1   0.1       1.3   1.3e+03      11      27 ..     937     953 ..     936     956 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0028
         PPR   3 ynslIsgycknGkleeAlelfkeM 26 
                  nsl ++y++ G++ eAl++ +  
  KKY16867.1 803 MNSLANSYSSIGDYNEALRMTEMV 826
                 69****************997665 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.56
         PPR   2 tynslIsgycknGkleeAlel 22 
                 + nsl + y+  G+++ A +l
  KKY16867.1 886 SMNSLANYYGETGQCDLARQL 906
                 67**************99887 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.3
         PPR  11 cknGkleeAlelfkeMk 27 
                 +k G+ eeAl l+++ +
  KKY16867.1 937 GKVGQNEEALALMEKAV 953
                 588999******99865 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.61   6.1e+02       5      25 ..     763     783 ..     761     785 .. 0.85
   2 ?    3.4   0.0      0.14   1.4e+02       6      29 ..     806     829 ..     792     832 .. 0.88
   3 ?   -1.2   0.0       4.1   4.1e+03       5      28 ..     847     870 ..     844     873 .. 0.74
   4 ?   -1.3   0.0       4.5   4.4e+03      13      31 ..     877     895 ..     869     897 .. 0.80
   5 ?   -2.2   0.0       8.5   8.5e+03       9      28 ..     893     912 ..     889     913 .. 0.76
   6 ?    2.8   0.0      0.22   2.2e+02       5      29 ..     931     955 ..     928     956 .. 0.80
   7 ?   -0.6   0.0       2.8   2.7e+03       4      26 ..     972     994 ..     970     998 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.61
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealer 25 
                 klal+y +  + ++A+ +l+ 
  KKY16867.1 763 KLALAYAENYRRQEAVNLLRG 783
                 89******66******99985 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerlike 29 
                 la sy + gd+ +Al++ e +++e
  KKY16867.1 806 LANSYSSIGDYNEALRMTEMVVEE 829
                 688899978********9999987 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 4.1
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlik 28 
                 +la  +   g++ +Al+ le+++ 
  KKY16867.1 847 NLAVRFGDIGRPKEALKRLEDVLA 870
                 5555455558999******99985 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 4.5
                 HHHHHHHHHHHHHHHHH-T CS
       TPR_6  13 lgdtdkAlealerlikeYP 31 
                 +g+  +Al+ +++l + Y 
  KKY16867.1 877 GGNDPDALRSMNSLANYYG 895
                 367789********99995 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 8.5
                 HHHHHHHHHHHHHHHHHHHH CS
       TPR_6   9 syrklgdtdkAlealerlik 28 
                  y ++g+ d A+++ e +++
  KKY16867.1 893 YYGETGQCDLARQLAELVLR 912
                 455678999***99998875 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.22
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlike 29 
                 +la    k g+ ++Al+++e+ +++
  KKY16867.1 931 NLAIWKGKVGQNEEALALMEKAVQR 955
                 6667777756***********9987 PP

  == domain 7  score: -0.6 bits;  conditional E-value: 2.8
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealerl 26 
                 + l l y+++g+t++A + +e++
  KKY16867.1 972 FSLSLYYQEMGRTADAWRVMESV 994
                 5566667779****996666665 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       9.2   9.2e+03       2      23 ..     759     780 ..     758     783 .. 0.78
   2 ?    7.0   0.1    0.0079       7.8       2      20 ..     801     819 ..     800     822 .. 0.92
   3 ?   -0.4   0.1       1.9   1.8e+03       2      27 ..     885     910 ..     884     912 .. 0.83
   4 ?    3.6   0.0     0.093        93      13      30 ..     938     955 ..     928     958 .. 0.85
   5 ?    0.5   0.0      0.94   9.4e+02       2      20 ..     969     987 ..     968     999 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 9.2
                 CHHHHHHHHHHHTT-HHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkey 23 
                 +++ +l+++y +  + +eA+  
  KKY16867.1 759 RILEKLALAYAENYRRQEAVNL 780
                 6777899999998888888765 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0079
                 CHHHHHHHHHHHTT-HHHH CS
       TPR_8   2 eayynlgsiylklgdyeeA 20 
                 +a++ l++ y++ gdy+eA
  KKY16867.1 801 RAMNSLANSYSSIGDYNEA 819
                 8999**************9 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.9
                 CHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyeka 27 
                 ++++ l++ y ++g+ + A +  e +
  KKY16867.1 885 RSMNSLANYYGETGQCDLARQLAELV 910
                 78899*********999998877665 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.093
                 HTT-HHHHHHHHHHHHHH CS
       TPR_8  13 klgdyeeAkeyyekalel 30 
                 k g+ eeA + +eka++ 
  KKY16867.1 938 KVGQNEEALALMEKAVQR 955
                 5699***********986 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 0.94
                 CHHHHHHHHHHHTT-HHHH CS
       TPR_8   2 eayynlgsiylklgdyeeA 20 
                 ++++ l++ y+++g+   A
  KKY16867.1 969 RSMFSLSLYYQEMGRTADA 987
                 78999*********99876 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1      0.02        20      15      33 ..     802     820 ..     801     821 .. 0.93
   2 ?    2.1   0.1      0.31   3.1e+02       9      33 ..     880     904 ..     879     905 .. 0.82
   3 ?   -2.0   0.0       6.6   6.6e+03      15      32 ..     970     987 ..     963     988 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.02
      TPR_17  15 aynnLAelllknGdlmtAr 33 
                 a+n LA+ ++++Gd+ +A+
  KKY16867.1 802 AMNSLANSYSSIGDYNEAL 820
                 79**************996 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.31
      TPR_17   9 dPnnadaynnLAelllknGdlmtAr 33 
                 dP+   ++n LA+++ + G+ + Ar
  KKY16867.1 880 DPDALRSMNSLANYYGETGQCDLAR 904
                 7888889*********999966666 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 6.6
      TPR_17  15 aynnLAelllknGdlmtA 32 
                 +++ L  ++ + G++++A
  KKY16867.1 970 SMFSLSLYYQEMGRTADA 987
                 7899999999***99988 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2      0.27   2.6e+02      19      57 ..     743     781 ..     741     789 .. 0.82
   2 ?   -1.1   0.0       3.2   3.2e+03       3      19 ..     806     822 ..     804     830 .. 0.83
   3 ?    5.1   0.3     0.036        36       1      61 [.     846     911 ..     846     917 .. 0.74
   4 ?    0.0   0.1       1.4   1.4e+03      11      29 ..     940     958 ..     937     987 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.27
      TPR_16  19 aleaalkrdpssPdaaeAllllgdaalrqgrlaeAaaly 57 
                  +++  ++d+s P+  + l  l++a++++ r +eA+ l+
  KKY16867.1 743 DYRRIFEDDKSNPEWLRILEKLALAYAENYRRQEAVNLL 781
                 689999999999999999999999999998888887555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 3.2
      TPR_16   3 laraalragdyddAaaa 19 
                 la+++   gdy +A+++
  KKY16867.1 806 LANSYSSIGDYNEALRM 822
                 79999999******987 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.036
      TPR_16   1 lalaraalragdyddAaaaleaalkrd.....pssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 ++la  + + g++ +A+++le +l+ +     + +Pda ++++ l++ + + g  ++A++l +  l
  KKY16867.1 846 YNLAVRFGDIGRPKEALKRLEDVLATQeatlgGNDPDALRSMNSLANYYGETGQCDLARQLAELVL 911
                 677888888999999999999999865222226677788888888888888888888887777665 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 1.4
      TPR_16  11 gdyddAaaaleaalkrdps 29 
                 g+ ++A+a+ e a+ r+++
  KKY16867.1 940 GQNEEALALMEKAVQRRKV 958
                 7888999999888888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1034 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      614  (0.0342462); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.50
# Mc/sec: 6265.29
//
Query:       KKY16868.1  [L=1162]
Description: putative uncharacterized membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-19   70.8  18.7    1.1e-13   51.1   0.1    3.7  4  ArAE_2_N  Putative ER transporter, 6TM, N-terminal
    5.8e-14   52.3  16.1    5.8e-14   52.3  16.1    2.7  2  FUSC_2    Fusaric acid resistance protein-like
    1.6e-09   37.1  13.2    2.1e-05   23.6   3.4    2.7  3  ALMT      Aluminium activated malate transporter
      4e-05   23.6   0.1    0.00042   20.2   0.0    2.2  2  ArAE_2    Aromatic acid exporter family member 2
    0.00017   20.3  14.2    0.00017   20.3  14.2    2.6  2  FUSC      Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> ArAE_2_N  Putative ER transporter, 6TM, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.9   2.1e-09   7.5e-06      18      87 ..      33     101 ..      22     105 .. 0.89
   2 !   51.1   0.1     3e-17   1.1e-13     143     328 ..     119     314 ..     115     451 .. 0.78
   3 ?   -5.1   2.3       3.3   1.2e+04      49      82 ..     662     695 ..     627     696 .. 0.69
   4 !    7.2   0.3    0.0006       2.2     162     238 ..     725     801 ..     703     880 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 2.1e-09
    ArAE_2_N  18 vifRswvavwvaiiLmvipptarwlGtaayLllivsvivpsGggsvivfilialllllgiclawawavia 87 
                 ++++  +a++ a ++m+ip + + +G+aayL+ i + + ++ g++   ++ + +l+ +g++la+aw+ + 
  KKY16868.1  33 RMVKVVIATTAADAIMLIPSVEASIGKAAYLAGITTAFGHP-GRRFGQMVEALVLVAFGTLLATAWSALG 101
                 67888999999******************************.8888888888889999********8765 PP

  == domain 2  score: 51.1 bits;  conditional E-value: 3e-17
    ArAE_2_N 143 vyavllcvflffvgrlrakspkfalgaifgiIaadvfltyapmlPlfapgtlglallkPmgiglalkvvvsllifPttssfqvlktmlkllkllkkalk 241
                 + a++l+v+lf++g +r+  p   lg +  iI+  v+l ++  + +   ++  ++++ P  i+++l v v+l +fP+ ss ++  t+ + l+++  al+
  KKY16868.1 119 IRALFLVVALFLHGFFRSYTPRVFLGTVLFIIVNVVNLVSTTKTLT---ISNITNIIYPIFIAIGLLVCVNLFLFPEFSSAYLGGTVTSSLQEVATALR 214
                 7799**************************9999888877766555...444469******************************************** PP

    ArAE_2_N 242 fnsnflatlepsnese..............wlnfkklekditkirslypkleaelaflplEfsigrfsaedvkel.rstlrrlissiagLvyfydllee 325
                  +  ++ +++ s ++               +   + +++ + kir+++ +++a   ++  E++++ + + ++k++ +++++++++ +   +  +++ + 
  KKY16868.1 215 DSGDYFIRVQGSPSTSndygqqvpdaetikP--INSITASKAKIRAKLTACKATQNECNFELAYSTLPPRSLKNIsQISMSKITMNVIAIISACESKYA 311
                 ********9988887788*********9652..69***************************************9456899999998888877777766 PP

    ArAE_2_N 326 lra 328
                 l+ 
  KKY16868.1 312 LLG 314
                 655 PP

  == domain 3  score: -5.1 bits;  conditional E-value: 3.3
    ArAE_2_N  49 llivsvivpsGggsvivfilialllllgiclawa 82 
                 l++v++  p  g sv  fil a+   lg +++wa
  KKY16868.1 662 LQLVLITEPTVGNSVQTFILRAFGTTLGCLWGWA 695
                 5678888888899999999999999999999998 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0006
    ArAE_2_N 162 spkfalgaifgiIaadvfltyapmlPlfapgtlglallkPmgiglalkvvvsllifPttssfqvlktmlkllkllkk 238
                 s+    g++++i ++ v+l   + + + ++ +  l    ++ ig+a+ ++v l++ P+  ++ +++++++ l+++++
  KKY16868.1 725 SKYVKAGIVTSISITVVALATEVSSASGTATQTFLRRFLAFTIGAAVALAVQLIFLPVKARTRMVDNIASCLRQIQE 801
                 5556788888888888888888888887555555555569****************************999887764 PP

>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5  12.4      0.02        73      14     101 ..      61     158 ..      26     185 .. 0.68
   2 !   52.3  16.1   1.6e-17   5.8e-14       7     127 .]     650     775 ..     634     775 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.02
      FUSC_2  14 geWalitaaivlsp.tlgasltravqRilGtvlGavlallllyllp....gn....lala.llvfllvfliafflkrnyalafifltllalllyslaa 101
                 ++ a+it a+   +   g+ +  +v   +Gt+l+ ++++l lyl+     +n    + +  l++++++fl  ff+++ + ++   + ++++ + +l+ 
  KKY16868.1  61 AYLAGITTAFGHPGrRFGQMVEALVLVAFGTLLATAWSALGLYLGGlliySNppagYTIRaLFLVVALFLHGFFRSYTPRVFLGTVLFIIVNVVNLVS 158
                 67888899998877799***********************9995554444332443443324455556666777777764444444444444444442 PP

  == domain 2  score: 52.3 bits;  conditional E-value: 1.6e-17
      FUSC_2   7 ellglwrgeWalitaaivlsptlgasltravqRilGtvlGavlallllyllpgn.lala.llvfllvfliafflkrny..alafifltllalllyslaa 101
                  +++++rg Wa++  +++ +pt+g+s+++++ R +Gt+lG++++++++ ++ gn ++   ++++ lv  ++++l+++y  a++++ +++++++l++  +
  KKY16868.1 650 AWFSTQRGLWAALQLVLITEPTVGNSVQTFILRAFGTTLGCLWGWAAYEAGNGNrIVCGsMIGIGLVPAAYVLLGSKYvkAGIVTSISITVVALAT--E 746
                 47999************************************************9877663566666666677779***554445555555554443..2 PP

      FUSC_2 102 ...gsgnpieialhRlldvliGiliallv 127
                    +sg   +++l R+l+ +iG+++al+v
  KKY16868.1 747 vssASGTATQTFLRRFLAFTIGAAVALAV 775
                 3368888888****************986 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.8   1.2e-07   0.00041      88     233 ..     116     254 ..      90     277 .. 0.81
   2 ?   -3.0   0.0      0.67   2.4e+03     332     396 ..     481     547 ..     451     594 .. 0.54
   3 !   23.6   3.4   5.9e-09   2.1e-05      11     230 ..     626     839 ..     621     887 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.2e-07
        ALMT  88 gkileeivigvsvFiiaalatflrliPaikarYdYgvlvflLTFclvvvsgyrtdevielAvkRfltiaiGaliclivsifvfPiwaGedLhklvaknl 186
                 g ++++++++v+ F+ +++ +++   P++      g + f++   + +vs  +t ++ +++   ++ i i +++ ++v++f+fP ++   L  +v ++l
  KKY16868.1 116 GYTIRALFLVVALFLHGFFRSYT---PRVFL----GTVLFIIVNVVNLVSTTKTLTISNITN-IIYPIFIAIGLLVCVNLFLFPEFSSAYLGGTVTSSL 206
                 6678899999999****999996...88766....999999999999999999998887764.577777777777779********************* PP

        ALMT 187 eklakslegcvdeyleekeker.kileyeakeedslysgyksvlnSks 233
                 +++a++l +  d +++ + +   +    ++  + + ++  +s+  Sk+
  KKY16868.1 207 QEVATALRDSGDYFIRVQGSPStSNDYGQQVPDAETIKPINSITASKA 254
                 *********998888876666433333355566666666777766666 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.67
        ALMT 332 evkvaaeeLqskldskskLlvnsekweaakkkekaeeveekkeeek..eseskkeea.eaveeaeses 396
                 ++++aa +++  ld++ +L+ ++++ +  +++  a + + +k  ++   ++++++e+ + ++ ++s+ 
  KKY16868.1 481 NIRQAATQITFMLDHSRYLVDAAQT-RRGRRRLYAPRISWRKWLRTggGEDQNTQETtTPNSLQSSVR 547
                 6777888888888777765444444.444444333333322222210011111111122222222222 PP

  == domain 3  score: 23.6 bits;  conditional E-value: 5.9e-09
        ALMT  11 vvfslkvGlaltLvsllyflrplykelgk.navWailTVvvvlefsvGATlskGlnRalaTliAGglalgvselasssgkileeivigvsvFiiaalat 108
                 v ++lkv +a+ Lv    f+ p    ++   ++Wa l  v++ e +vG  ++  + Ra++T     l+ +  + a   g+ ++ iv+g ++ i    a+
  KKY16868.1 626 VQYALKVTIACFLVLWPAFVAPWNAWFSTqRGLWAALQLVLITEPTVGNSVQTFILRAFGT----TLGCLWGWAAYEAGN-GNRIVCGSMIGIGLVPAA 719
                 789*********************99986268*****************************....578888999******.************9999** PP

        ALMT 109 flrliPaikarYdYgvlvflLTFclvvvs...gyrtdevielAvkRfltiaiGaliclivsifvfPiwaGedLhklvaknleklakslegcvdeyleek 204
                 ++ l  +    Y  +  v  +   +v+++   +  +++ +++  +Rfl   iGa+++l v +++ P+ a   +   +a+ l ++ ++ + +  ++ +  
  KKY16868.1 720 YVLLGSK----YVKAGIVTSISITVVALAtevSSASGTATQTFLRRFLAFTIGAAVALAVQLIFLPVKARTRMVDNIASCLRQIQEMQSSIAFGIEQVA 814
                 *998766....444566655555555544111567788899999*************************988888888888888888777777776655 PP

        ALMT 205 ekerkileyeakeedslysgyksvln 230
                   +  + +     ++++ s+ k +l+
  KKY16868.1 815 DTD-ITAHRTVRRFEKASSKAKVALQ 839
                 555.3333344455555555555554 PP

>> ArAE_2  Aromatic acid exporter family member 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.12   4.4e+02      13      94 ..     208     292 ..     206     305 .. 0.81
   2 !   20.2   0.0   1.2e-07   0.00042       7     225 ..     785    1006 ..     781    1009 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.12
      ArAE_2  13 tlaktlselgdlyckvlsfaaerlenphihikae....rdqirkkilevleklaglkgllvllkfElslkGrwpskkyarlqalvs 94 
                  +a +l++ gd + +v    ++ ++  +   +ae     + i ++  ++++kl   k++ +  +fEl   +  p ++++++ ++ +
  KKY16868.1 208 EVATALRDSGDYFIRVQGSPSTSNDYGQQVPDAEtikpINSITASKAKIRAKLTACKATQNECNFELA-YSTLPPRSLKNISQISM 292
                 5789999999999999888888777555555555554467888899999******************9.99999999999988755 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1.2e-07
      ArAE_2    7 krlvrktlaktlselgdlyckvlsfaaerlenphihikaerdqirkkilevleklaglkgllvllkfElslkGrwps..kkyarlqalvselvqlla 101 
                  +  +  ++a+ l+++ ++  ++   +++ +++++i + ++   + k + ++   l+ ++g +   + E+ lkG+++     y+++  +++++v+   
  KKY16868.1  785 RTRMVDNIASCLRQIQEMQSSIAFGIEQ-VADTDITAHRTVRRFEKASSKAKVALQAAEGYMPFCSKEPRLKGPFDGplLVYKEIAFVLHQIVDRME 880 
                  5555567788888888888888766666.8899999999989999******************************762268************9998 PP

      ArAE_2  102 rLlvvlkrlepeewlkrllrrvglldpeliadvlavlsmasqaLktGdpLPeilpap......Lvkrhlellrkqlkleeseeeadslaealslell 192 
                   + ++ +       l+r   ++     ++ a ++ +l  + +aL t  pLP+++p+       L+ r  e+ r++ ++    e+ d+   a ++  +
  KKY16868.1  881 NMFTLRSIY-GSGPLQRYNAKIFPYRRNIAASIIIILFSVHEALTTHLPLPQFMPSArlaqirLINRVREMVRDEVRQRT--EMGDDTGVATRKHAI 974 
                  877766665.67778999999999999***************************97422222245555555555554444..333333222222222 PP

      ArAE_2  193 rsedgrrfivalsialkildrlDelvlvvKglv 225 
                    ++ ++  ++ +++  +++ l elv   K lv
  KKY16868.1  975 -RRNFLSWNAGQMAQAEVVEYLEELVDLAKLLV 1006
                  .33445555555555555555555555555555 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   6.3      0.69   2.5e+03     428     520 ..     121     213 ..      76     218 .. 0.46
   2 !   20.3  14.2   4.8e-08   0.00017       1     172 [.     625     802 ..     625     835 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.69
        FUSC 428 vlvlapplllggllla.rprlagiglgl.avffalllapqnamtydfatflnsalAlllGvllaavvfrlirpvsaewlarrllralrrdlaraa 520
                 +l+l+++l+l g++ +  pr  ++++ + +v+++ l++ + + t   + + n    ++++++l + v  +++p  +  +    + ++++++a+a+
  KKY16868.1 121 ALFLVVALFLHGFFRSyTPRVFLGTVLFiIVNVVNLVSTTKTLTI--SNITNIIYPIFIAIGLLVCVNLFLFPEFSSAYLGGTVTSSLQEVATAL 213
                 455555555544443314555443333303344444444444433..333444444444444444444444444444444444444455555444 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 4.8e-08
        FUSC   1 dwlFalKtllAalLALyiAl......rleLpqPywAmtTVfiVsqPlsGavlsKslyRllGTllGaaaavllvalfvqapllfllalalWiglclalsl 93 
                 d+++alK+++A++L L+ A+      ++  ++  wA++  + +  P++G +++  + R++GT+lG++ + +   +   +++++  +++  igl  a+ +
  KKY16868.1 625 DVQYALKVTIACFLVLWPAFvapwnaWFSTQRGLWAALQLVLITEPTVGNSVQTFILRAFGTTLGCLWGWAAYEAGNGNRIVCGSMIG--IGLVPAAYV 721
                 589****************977777789****************************************************99987776..677777777 PP

        FUSC  94 ldrnfrsYafvLAGYTaalialpa..vadPetvFdiAvaRvseIvlGIvCaalVsalvfPrsvapalrarlrallrdalal 172
                 l+ +    a ++  + ++ +al +   +   t+ ++ + R    ++G  +a++V ++++P +++ ++ + ++++lr+  + 
  KKY16868.1 722 LLGSKYVKAGIVTSISITVVALATevSSASGTATQTFLRRFLAFTIGAAVALAVQLIFLPVKARTRMVDNIASCLRQIQEM 802
                 77777777777777777777665421559999*******************************************997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1139  (0.0635284); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.93u 0.36s 00:00:01.29 Elapsed: 00:00:00.54
# Mc/sec: 6430.04
//
Query:       KKY16869.1  [L=471]
Description: putative set domain containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.50
# Mc/sec: 2806.23
//
Query:       KKY16870.1  [L=433]
Description: putative hco3transporter family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-35  120.8   1.1    9.4e-35  120.4   1.1    1.1  1  HCO3_cotransp  HCO3- transporter family


Domain annotation for each model (and alignments):
>> HCO3_cotransp  HCO3- transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4   1.1   5.2e-39   9.4e-35     247     505 ..      32     301 ..      13     304 .. 0.83

  Alignments for each domain:
  == domain 1  score: 120.4 bits;  conditional E-value: 5.2e-39
  HCO3_cotransp 247 lsliLflgtfllalfLkkfkksrflptkvRelisDfavliailvmvlvdvllg....vetpklevpeefkptsekrgwlinpleknpwwlvlaavl 338
                    ++ iLf  t+   + L+k+ +s+ ++  +R +++D+a +ia ++++ + ++ g     +  +l + + f pt  +r+wli  + ++p+ +v++a+ 
     KKY16870.1  32 MVAILF--TL-TVYLLEKLGQSTIFRPGIRAILGDYAYPIATILWTGFTHIPGnlsfANFARLPITRAFYPT-VDRSWLI-DFWNLPIKWVFVALP 122
                    333333..33.34779*************************99999887765544447889**********8.56*****.7889*********** PP

  HCO3_cotransp 339 pallvtiLifmdqqitavivnrkenkLkKgsgyhlDLlvvavlilvlsllGlPwlvaatvlsitHvnslkveset.....sapG.....ekpkilg 424
                     +ll+t+L++ d++++++  + k+  LkK +g+h+D+++++++ +v +++G+P+  + +++++ H +sl++++++     +  G     +k   ++
     KKY16870.1 123 FGLLLTLLFYYDHNVSSLTAQAKQFPLKKPAGFHWDFFLLGITSFVSGIIGIPLPNGLVPQAPVHTDSLTNYEDQvetvtTTDGhelrrKKTVAVS 218
                    *********************************************************************987765111114568544223556789 PP

  HCO3_cotransp 425 vrEqRvtgllvfiliglsvl..ltpvlklIPmpVLyGvFLYmgvtsLkgiqlfdRilLllmpakhqpdtiYlrkvplrkvhlF 505
                    v EqR++++l+++ i  ++   l  vl+++P +V  GvF+ +g  s++ + ++ ++l ll + +   + + l k p  ++ l+
     KKY16870.1 219 VVEQRLSHFLMALAITGTMTgpLLIVLHTMPRAVFSGVFFIVGWGSIETNGIVHKLLFLLQEPRFIQPSEPLLKLPKPRITLY 301
                    9**********999988887778999*****************************9988887665444444556677777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.51
# Mc/sec: 2538.54
//
Query:       KKY16871.1  [L=548]
Description: putative glucosidase 2 subunit beta precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-41  140.5   1.7    1.3e-40  139.1   1.7    1.7  1  PRKCSH-like   Glucosidase II beta subunit-like
    2.2e-25   89.1   1.8    6.2e-24   84.4   0.1    3.0  2  PRKCSH_1      Glucosidase II beta subunit-like protein
      2e-09   38.3   0.2    7.6e-09   36.5   0.0    2.1  1  PRKCSH        Glucosidase II beta subunit-like protein
     0.0012   18.2   3.8     0.0022   17.4   3.8    1.4  1  CASP_C        CASP C terminal
     0.0071   14.6   4.3      0.013   13.7   4.3    1.3  1  EzrA          Septation ring formation regulator, EzrA
  ------ inclusion threshold ------
      0.011   16.1   5.1      0.011   16.1   5.1    2.1  1  Uso1_p115_C   Uso1 / p115 like vesicle tethering protein, C t
      0.061   13.6   0.9         21    5.4   0.1    3.0  3  DUF5082       Domain of unknown function (DUF5082)
      0.067   13.3   2.2        3.6    7.7   3.9    2.6  3  Mod_r         Modifier of rudimentary (Mod(r)) protein
        0.1   12.2   8.6       0.25   10.9   1.6    2.3  2  PspA_IM30     PspA/IM30 family
        0.2   11.0   7.1       0.34   10.2   7.1    1.4  1  DUF4407       Domain of unknown function (DUF4407)
       0.62   10.5   4.2        9.4    6.7   0.2    2.9  3  FlaC_arch     Flagella accessory protein C (FlaC)
       0.83    9.7  11.1        2.5    8.2   1.0    3.4  3  TPR_MLP1_2    TPR/MLP1/MLP2-like protein
        1.4    9.2  10.0       0.32   11.2   0.4    2.8  2  Ldl_recept_a  Low-density lipoprotein receptor domain class A
        4.1    8.1   8.9        2.8    8.6   2.3    2.5  2  GTP-bdg_M     GTP-binding GTPase Middle Region
        4.6    7.8   9.1         21    5.6   0.7    3.2  3  DUF4140       N-terminal domain of unknown function (DUF4140)
        6.8    7.4   6.1         39    5.0   0.4    2.4  2  SlyX          SlyX
        7.2    6.8   9.4         10    6.3   0.5    2.9  3  Fib_alpha     Fibrinogen alpha/beta chain family
        7.4    7.1   6.5    1.8e+02    2.7   6.5    2.4  1  DUF16         Protein of unknown function DUF16
          9    7.0   8.7        5.8    7.6   1.3    3.2  3  BST2          Bone marrow stromal antigen 2
        9.3    7.1   8.8        5.2    8.0   1.7    2.6  2  FliT          Flagellar protein FliT
        9.9    6.2   7.8         20    5.2   1.3    2.5  2  DUF1664       Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> PRKCSH-like  Glucosidase II beta subunit-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.1   1.7   1.5e-43   1.3e-40      37     174 ..      19     163 ..      12     165 .. 0.91

  Alignments for each domain:
  == domain 1  score: 139.1 bits;  conditional E-value: 1.5e-43
  PRKCSH-like  37 nwkclnsseiklsfdqvnddycdcPdGsdePGtsaceng...kfycaneGyisgyiesfkvddgvcdydiccdGsde....elgkcenkcaeiarkfe 127
                   + c++ ++i +  + vnddycdcPdGsdeP  +  + +    fyc+n+G+i++y++s  v+dg cdyd ccdGsde      ++c++kc+ei ++++
   KKY16871.1  19 RFSCISLPSITVPASAVNDDYCDCPDGSDEPEPQNLSAPalpGFYCKNKGHIPAYLPSLAVNDGKCDYDYCCDGSDEwagiGGVHCPDKCKEIGKEWR 116
                  578****************************876555544449**********************************66555579************* PP

  PRKCSH-like 128 elleeankkvkkglkikeelllaakkkldelkkklkeledslkakkk 174
                  ++ e ++k +  ++k+++el+ +a++ + +++++ + le ++k +++
   KKY16871.1 117 KQDESRKKALGVAVKRRKELVSEAARLRGDIEHRIATLEREVKEHET 163
                  ****************************************9988765 PP

>> PRKCSH_1  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2      0.21   1.8e+02       3      51 ..     216     267 ..     214     288 .. 0.78
   2 !   84.4   0.1   7.3e-27   6.2e-24       6     131 ..     365     534 ..     360     547 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.21
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX-TTTTT...-EEEEEETTE CS
    PRKCSH_1   3 keldeaeedikkieseltklkeeleseyGldDiyRaleg...revkekigdY 51 
                 ++ d+++  ++++e  l+++kee + ++  + + Ra+ +    + kek gd+
  KKY16871.1 216 EQRDAQRARVQELEAILSTFKEEYNPNFNDEGVKRAVRSwedYAAKEKEGDW 267
                 567888999999****************988888887651115667777776 PP

  == domain 2  score: 84.4 bits;  conditional E-value: 7.3e-27
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX.XX-TTTTT-EEEEEETTEEEEEETTSEEEE......TTEEEEEEEEEE....................... CS
    PRKCSH_1   6 deaeedikkieseltklkeeleseyGldDiyRalegrevkekigdYeYkvvllesvvq......ddisiGefkkqe....................... 75 
                  +a++  ++ ++ l++   +l++ +G+dD++R l+ ++v+ ++g+Y Yk +++ +++q      ++  +G+f++                         
  KKY16871.1 365 SAARSALSSCQNSLSNTRSDLDKPFGPDDVFRSLKDTCVEVDSGEYVYKHCYFSKITQrpkkggGETNMGKFEELTtipasdvdaaldpedlssgpnts 463
                 55666777889999999*******************************************9999999******9999********************** PP

                 ...............TTEEEEEE-SB-TTSSC-EEEEEEEE-SS-EEEEEEEEETTEEEEEEEEGGG--XX CS
    PRKCSH_1  76 ...............gnklkyekGakCWnGPvRsaiveveCGdenelvsvseaekCeYllkvkspaaCsnv 131
                                  +l y++G+ CWnGP Rsa v + C +++ l  + e+ekC Y++   s a+C ++
  KKY16871.1 464 pmaaaqqgghfgpneRIVLSYANGQGCWNGPARSAKVILGCSEKEVLWRIRESEKCVYEVWAGSSAVCPET 534
                 *************9778899************************************************433 PP

>> PRKCSH  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   8.9e-12   7.6e-09       2      81 .]     401     490 ..     400     490 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 8.9e-12
                 -EEEEEETTEEEEEETTTEEEEE-EETTEE-S--EEEEEE..EEEEEEE-------.....................---S--EEEEEEEEE-SB- CS
      PRKCSH   2 kCvsskegwwtYelCygkkvrQfhepekekgksevvLGrfnkeehsewaekneaks................ystedeekqsnryislkyenGtkC 81 
                 +Cv+ ++g+++Y+ Cy++k++Q ++    kg+ e+++G+f  ee + + +++++++                   ++   + n  i+l y nG+ C
  KKY16871.1 401 TCVEVDSGEYVYKHCYFSKITQRPK----KGGGETNMGKF--EELTTIPASDVDAAldpedlssgpntspmaAAQQGGHFGPNERIVLSYANGQGC 490
                 8************************....***********..6666666666666667888888888888776777778889999*********99 PP

>> CASP_C  CASP C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   3.8   2.6e-06    0.0022       7     114 ..     130     239 ..     124     244 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.6e-06
      CASP_C   7 lseleaeleeqkeLnekLEndllkvqseasnaskasdassagsevsrkaese........grk.sptssiisgaeesesaesssessiLpivtsQRDRF 96 
                 +++ ++ ++e+ +L    E+ ++++++e +++  + + +++g ev   +++e        g k s+ts+ ++ a+++     ++  s L+ v +QRD  
  KKY16871.1 130 VKRRKELVSEAARLRGDIEHRIATLEREVKEH--ETKVAQLGDEVLDLEQKEkfkivksgG-KgSKTSTLANLAKQRV----EELRSTLTTVREQRDAQ 221
                 56677778888999999999999999988865..456667788877777553355655533.4366666666665543....347899*********** PP

      CASP_C  97 rkrnaeLEeelrkqeetv 114
                 r+r++eLE+ l++ +e+ 
  KKY16871.1 222 RARVQELEAILSTFKEEY 239
                 **********99998875 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   4.3   1.5e-05     0.013      52     155 ..     141     242 ..     111     247 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
                 S---TTTHHHHHHHHHHHHHHHHHHTHHHHHT-GGGT--S-SHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTHHHHHHHHHHHHHHHH CS
        EzrA  52 lnltgeseekfeewkkkwdeiktkklpeieellfeaeelldkykfkkakkklaeleeeldeveekikkileelkelteseeknreeieklkekYrelrk 150
                  +l g++e++  +++++ +e +t k++++ +++ ++e + +k+k+ k+  k +++ +  + ++++++++++ l+ ++e+   +r+++++l+    ++++
  KKY16871.1 141 ARLRGDIEHRIATLEREVKEHET-KVAQLGDEVLDLE-QKEKFKIVKSGGKGSKTSTLANLAKQRVEELRSTLTTVREQRDAQRARVQELEAILSTFKE 237
                 56789999999999999999999.9***********9.679*********************************************************9 PP

                 T--TT CS
        EzrA 151 kllan 155
                 +++ n
  KKY16871.1 238 EYNPN 242
                 99865 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.1   5.1   1.3e-05     0.011       5      83 ..     146     229 ..     142     240 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.3e-05
  Uso1_p115_C   5 eleseaaslkdeneklkaelqslskalesleqkeakkaaes..qakeleaenkklekeleklraelkeekekekek...qkEld 83 
                  ++e + a+l++e +++++++ +l +++ +leqke++k  +s  + ++++  ++  ++++e+lr++l + +e+ +++    +El+
   KKY16871.1 146 DIEHRIATLEREVKEHETKVAQLGDEVLDLEQKEKFKIVKSggKGSKTSTLANLAKQRVEELRSTLTTVREQRDAQrarVQELE 229
                  7899*****************************555444430044555566666777888888888888888877755555555 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.024        21      88     122 ..     142     176 ..     113     177 .. 0.84
   2 ?   -1.6   0.1       3.6   3.1e+03      23      42 ..     201     220 ..     189     251 .. 0.61
   3 ?    5.2   0.0     0.028        24      29      53 ..     364     388 ..     357     410 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.024
     DUF5082  88 elidaieeEIerLenqiseaqgvldtlqsqlnslk 122
                  l   ie  I +Le +++e+++++++l  ++ +l+
  KKY16871.1 142 RLRGDIEHRIATLEREVKEHETKVAQLGDEVLDLE 176
                 556679999****************9999988876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.6
     DUF5082  23 eekIerLkeaktklsdekes 42 
                  + +e+L+++ t++ ++  +
  KKY16871.1 201 KQRVEELRSTLTTVREQRDA 220
                 45566666555555554433 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.028
     DUF5082  29 Lkeaktklsdekeslkqkkkklekp 53 
                 L +a+++ls+ ++sl++++++l kp
  KKY16871.1 364 LSAARSALSSCQNSLSNTRSDLDKP 388
                 889*****************99887 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.5         1   8.5e+02      53      85 ..     148     180 ..     107     202 .. 0.59
   2 ?    7.7   3.9    0.0042       3.6      49     109 ..     196     257 ..     146     281 .. 0.74
   3 ?   -0.0   0.0         1   8.6e+02      54     102 ..     355     400 ..     347     407 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1
       Mod_r  53 epeleelrselqekleelkelekefeekeqeld 85 
                 e ++  l  e++e   ++++l +e+ ++eq+ +
  KKY16871.1 148 EHRIATLEREVKEHETKVAQLGDEVLDLEQKEK 180
                 334444455555555556666666666655554 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0042
       Mod_r  49 nlsl.epeleelrselqekleelkelekefeekeqeldellqkfspdallarLqtavaeaee 109
                   +l ++++eelrs l+  +e+ ++ +++++e+e+ l++  ++++p+++ + ++ av+  e+
  KKY16871.1 196 LANLaKQRVEELRSTLTTVREQRDAQRARVQELEAILSTFKEEYNPNFNDEGVKRAVRSWED 257
                 33445679*****************************************9999999987766 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 1
       Mod_r  54 peleelrselqekleelkelekefeekeqeldellqkfspdallarLqt 102
                 p l   rs+l+++++ l ++++++ +  ++ld   ++f+pd + + L+ 
  KKY16871.1 355 PALSGARSSLSAARSALSSCQNSLSNTRSDLD---KPFGPDDVFRSLKD 400
                 56667777777777777777777777776665...46666666666655 PP

>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.6   0.00029      0.25      67     127 ..     115     178 ..     104     185 .. 0.85
   2 ?    5.0   0.8     0.018        15      96     133 ..     200     237 ..     192     251 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00029
   PspA_IM30  67 akklekkAkaALtkg...eeeLArealaeikslekqaealetqlaqqrsaveqlrkqlealetk 127
                  +k  ++ k+AL  +   + eL  ea++ + + e+ ++ le ++++ ++ v+ql  ++ +le+k
  KKY16871.1 115 WRKQDESRKKALGVAvkrRKELVSEAARLRGDIEHRIATLEREVKEHETKVAQLGDEVLDLEQK 178
                 45555566777777777799******************************************98 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.018
   PspA_IM30  96 lekqaealetqlaqqrsaveqlrkqlealetkieelka 133
                 +++ +e+l+  l+ +r++++  r+ +++le+ ++ +k+
  KKY16871.1 200 AKQRVEELRSTLTTVREQRDAQRARVQELEAILSTFKE 237
                 44555555555555555555555555555555555554 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   7.1    0.0004      0.34     107     232 ..     110     238 ..     108     251 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0004
     DUF4407 107 eIdaelaeeqqeeakelkeqlaaa.............ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaql 192
                 eI +e ++++++++k+l   ++                + ++a+le+++++ +++++++ +++ +l+++ + ++    ++g     Gkg  + +  + +
  KKY16871.1 110 EIGKEWRKQDESRKKALGVAVKRRkelvseaarlrgdIEHRIATLEREVKEHETKVAQLGDEVLDLEQKEKFKIV---KSG-----GKGSKTSTLANLA 200
                 666666666666666665555555665555322222244555555555555555555555555555544444444...344.....6666666655555 PP

     DUF4407 193 daaqaelaelkakldatarlaalraelaeleaerakeraa 232
                 +++ +el +  ++   +++++a+ra+ +elea +++ +++
  KKY16871.1 201 KQRVEELRSTLTT--VREQRDAQRARVQELEAILSTFKEE 238
                 5555555555555..5555555555555555544444444 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.2     0.011       9.4      12      40 ..     147     175 ..     144     178 .. 0.70
   2 ?    4.0   0.1     0.079        68       7      34 ..     202     229 ..     197     234 .. 0.91
   3 ?   -2.0   0.0       5.6   4.8e+03       9      31 ..     364     386 ..     360     387 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
   FlaC_arch  12 lsteletvkkeneelsksveelkenVkdl 40 
                 ++ +++t+++e +e +++v +l ++V dl
  KKY16871.1 147 IEHRIATLEREVKEHETKVAQLGDEVLDL 175
                 66677777777777777777777777665 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.079
   FlaC_arch   7 nklsklsteletvkkeneelsksveelk 34 
                 +++++l ++l+tv+++ +  +  v+el+
  KKY16871.1 202 QRVEELRSTLTTVREQRDAQRARVQELE 229
                 689999************9999999997 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 5.6
   FlaC_arch   9 lsklsteletvkkeneelsksve 31 
                 ls   + l++ ++++++ +++++
  KKY16871.1 364 LSAARSALSSCQNSLSNTRSDLD 386
                 55556677777777777776665 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   3.2      0.42   3.6e+02      75     115 ..     128     168 ..     108     181 .. 0.50
   2 ?    8.2   1.0     0.003       2.5      60     102 ..     198     240 ..     188     246 .. 0.73
   3 ?    2.9   0.0      0.13   1.1e+02      74     103 ..     358     387 ..     354     389 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.42
  TPR_MLP1_2  75 elkaeaesakaeleeseesweeqkeelekelselekriedl 115
                  + ++++++ +e ++ +  +e +  +le+e++e e+++  l
  KKY16871.1 128 VAVKRRKELVSEAARLRGDIEHRIATLEREVKEHETKVAQL 168
                 44444444444444444444444444444444444444433 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.003
  TPR_MLP1_2  60 qalreelnelkaeiaelkaeaesakaeleeseesweeqkeele 102
                 + ++++++el+++++++++++++ +a ++e e+ +++ kee+ 
  KKY16871.1 198 NLAKQRVEELRSTLTTVREQRDAQRARVQELEAILSTFKEEYN 240
                 4567788888888888888888888888888887777777765 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.13
  TPR_MLP1_2  74 aelkaeaesakaeleeseesweeqkeelek 103
                 + +++++ +a+++l+ +++s++++++ l+k
  KKY16871.1 358 SGARSSLSAARSALSSCQNSLSNTRSDLDK 387
                 556788888899999999998888888875 PP

>> Ldl_recept_a  Low-density lipoprotein receptor domain class A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   0.00038      0.32      15      35 ..      29      49 ..      17      53 .. 0.76
   2 ?    0.7   3.9      0.76   6.5e+02      21      34 ..      83      95 ..      79     104 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00038
                  EEEGGGTTSSSTTSSSSGCCS CS
  Ldl_recept_a 15 CIprswvCdgeaDCeDgSDEe 35
                   +p s v d+  DC DgSDE 
    KKY16871.1 29 TVPASAVNDDYCDCPDGSDEP 49
                  577888889999********4 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.76
                  TTSSSTTSSSSGCC CS
  Ldl_recept_a 21 vCdgeaDCeDgSDE 34
                  +Cd +  C DgSDE
    KKY16871.1 83 KCDYDY-CCDGSDE 95
                  566654.99****9 PP

>> GTP-bdg_M  GTP-binding GTPase Middle Region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.8       0.2   1.7e+02      51      71 ..     144     164 ..     115     171 .. 0.84
   2 ?    8.6   2.3    0.0033       2.8      39      77 ..     186     223 ..     163     224 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHHHHHHHHHH CS
   GTP-bdg_M  51 rrlireriaklkkeLekvkkk 71 
                 r  i++ria+l++e+++ ++k
  KKY16871.1 144 RGDIEHRIATLEREVKEHETK 164
                 66899**********998876 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0033
                 XXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHH.... CS
   GTP-bdg_M  39 trGpGetkleldrrlireriaklkkeLekvkkkrelqrk 77 
                   G+G + + +  +l ++r+++l++ L  v+++r+ qr+
  KKY16871.1 186 SGGKGSK-TSTLANLAKQRVEELRSTLTTVREQRDAQRA 223
                 4455654.5777899***********************8 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   2.2      0.18   1.5e+02      50      96 ..     126     180 ..     117     182 .. 0.69
   2 ?    5.6   0.7     0.025        21      63      93 ..     200     230 ..     184     238 .. 0.59
   3 ?    1.2   0.0      0.58   4.9e+02      37      93 ..     317     383 ..     310     386 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.18
     DUF4140  50 ldvqvervpnreaeee........elkalraeleeledelaaledelaaaearla 96 
                 l+v+v+r+ +  +e++        ++++l++e++e e++ a+l de   +e++ +
  KKY16871.1 126 LGVAVKRRKELVSEAArlrgdiehRIATLEREVKEHETKVAQLGDEVLDLEQKEK 180
                 5566666555555555566666656888888888888888888888877777766 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.025
     DUF4140  63 eeeelkalraeleeledelaaledelaaaea 93 
                 +++++++lr++l++++++++a +++ + +ea
  KKY16871.1 200 AKQRVEELRSTLTTVREQRDAQRARVQELEA 230
                 3334556666666666666666666555554 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.58
     DUF4140  37 dSlrVegaga.atildvqver..vpnreaeee.........elkalraeleeledelaaledelaaaea 93 
                  S+rV  a++ a++ ++ +++      ++  +         +l+ +r++l +++ +l+  +++l++ ++
  KKY16871.1 317 PSVRVFLAEKiAVVKEILITNgiL--APPTPSdtasipespALSGARSSLSAARSALSSCQNSLSNTRS 383
                 588888777778888888887542..2222222457777766888888888888888888887777665 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.8     0.056        48       2      31 ..     148     177 ..     147     181 .. 0.79
   2 ?    5.0   0.4     0.045        39      16      53 ..     201     238 ..     195     247 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.056
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX   2 eerleeLEiklafqedtieeLndvvaeqqq 31 
                 e+r+  LE ++  +e  + +L d+v + +q
  KKY16871.1 148 EHRIATLEREVKEHETKVAQLGDEVLDLEQ 177
                 788888888888888888888888877665 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.045
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX  16 edtieeLndvvaeqqqqidrlqrqlrllaerlkelees 53 
                  + +eeL  +++  ++q d++++++++l+  l++ +e+
  KKY16871.1 201 KQRVEELRSTLTTVREQRDAQRARVQELEAILSTFKEE 238
                 5679************************9999877776 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.6       1.7   1.4e+03       4      32 ..      88     121 ..      85     128 .. 0.68
   2 ?    6.3   0.5     0.012        10      79     117 ..     140     178 ..     106     182 .. 0.66
   3 ?    5.1   0.3     0.027        23      33      84 ..     200     253 ..     194     284 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.7
                 TCCTCCCCC....EEEEE-CCH.HHHCCCCCCCC CS
   Fib_alpha   4 gccildeef....gslCPtgCg.lqdlllkyekd 32 
                  cc  ++e+    g+ CP  C+ + +   k++++
  KKY16871.1  88 YCCDGSDEWagigGVHCPDKCKeIGKEWRKQDES 121
                 5777777776666899*****5265555555555 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.012
                 HHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHH CS
   Fib_alpha  79 ikksskeleeeilrlketidaqesnirvLqnvlesneqk 117
                   +++ ++e++i++l+++++++e+++ +L + + ++eqk
  KKY16871.1 140 AARLRGDIEHRIATLEREVKEHETKVAQLGDEVLDLEQK 178
                 445667788888888888888888888887766666554 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.027
                 CCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHH CS
   Fib_alpha  33 vkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdn..dnvikkssk 84 
                  k+++e+l+++l++++++    +  v+e++ +l   ++++++n  d+ +k+  +
  KKY16871.1 200 AKQRVEELRSTLTTVREQRDAQRARVQELEAILSTFKEEYNPNfnDEGVKRAVR 253
                 578999999999999999999999999999999998888888765666666555 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   6.5      0.21   1.8e+02      38      73 ..     146     181 ..     117     242 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.21
                 HHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DUF16  38 kieakvdklgeqinkleqkvekqgekikelkveqka 73 
                 +ie+++++l+ ++++ e kv ++g+++ +l+++ k 
  KKY16871.1 146 DIEHRIATLEREVKEHETKVAQLGDEVLDLEQKEKF 181
                 688888888888888888898888888655554443 PP

>> BST2  Bone marrow stromal antigen 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.5      0.52   4.4e+02      69      89 ..     145     165 ..     108     182 .. 0.65
   2 ?    7.6   1.3    0.0068       5.8      39      80 ..     196     237 ..     188     242 .. 0.86
   3 ?   -0.1   0.0       1.7   1.5e+03      26      56 ..     357     387 ..     355     389 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.52
                 HHHHHHHHHHHHHHHHHHHHC CS
        BST2  69 qelqgeikkLnqkLqdaeaev 89 
                  +++  i++L+ ++++ e++v
  KKY16871.1 145 GDIEHRIATLEREVKEHETKV 165
                 444555555555555555554 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0068
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  39 qaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnq 80 
                  a+  +q v++L++ L+  + q   q+a+vqel+  + + ++
  KKY16871.1 196 LANLAKQRVEELRSTLTTVREQRDAQRARVQELEAILSTFKE 237
                 56667899**************************98888776 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  26 LtqaqeslreaeaqaatcnqtvvtLkasLek 56 
                 L  a+ sl  a    ++c++ + + +++L+k
  KKY16871.1 357 LSGARSSLSAARSALSSCQNSLSNTRSDLDK 387
                 667899999999999***9999999999876 PP

>> FliT  Flagellar protein FliT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.8      0.29   2.5e+02      38      78 ..     138     178 ..     125     182 .. 0.80
   2 ?    8.0   1.7    0.0061       5.2      56      84 ..     195     223 ..     191     223 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.29
                 HHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHCHTHHH CS
        FliT  38 aereekrellr.rilandaeirallqprldelqkllgalrrq 78 
                 +e++++r  ++ ri ++++e++++ +++ ++l++++ +l ++
  KKY16871.1 138 SEAARLRGDIEhRIATLEREVKEH-ETKVAQLGDEVLDLEQK 178
                 5678888888889*******9998.77888888887777665 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0061
                 HHHHHHHHHHHHHHHHHCHTHHHHHHHHH CS
        FliT  56 eirallqprldelqkllgalrrqrkanna 84 
                  + +l+++r +el++ l+++r qr a++a
  KKY16871.1 195 TLANLAKQRVEELRSTLTTVREQRDAQRA 223
                 6789**********************997 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   1.3     0.023        20      59     116 ..     121     178 ..     106     186 .. 0.78
   2 ?    4.4   0.3     0.041        35      78     119 ..     193     234 ..     180     239 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.023
     DUF1664  59 atkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesk 116
                 + k+ L   ++r  + + e +++  +i++ +++++++++e +++v ++ + v +le+k
  KKY16871.1 121 SRKKALGVAVKRRKELVSEAARLRGDIEHRIATLEREVKEHETKVAQLGDEVLDLEQK 178
                 5677788888888888888888888888888888888888888888888888888876 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.041
     DUF1664  78 qkeiskeikeevtevredlseigedvesvkeavegleskler 119
                 ++ +++  k+ v+e+r+ l++++e+ ++ ++ v++le+ l++
  KKY16871.1 193 TSTLANLAKQRVEELRSTLTTVREQRDAQRARVQELEAILST 234
                 566677788899999999999999999999999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1064  (0.0593452); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 3527.96
//
Query:       KKY16872.1  [L=757]
Description: putative glucose-6-phosphate isomerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.2e-236  786.0   0.9   1.4e-236  785.8   0.9    1.1  1  PGI           Phosphoglucose isomerase
    0.00078   18.7   0.0     0.0018   17.5   0.0    1.5  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> PGI  Phosphoglucose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  785.8   0.9  1.6e-240  1.4e-236       1     486 []     266     747 ..     266     747 .. 0.99

  Alignments for each domain:
  == domain 1  score: 785.8 bits;  conditional E-value: 1.6e-240
                 E-TTSS--HHHHHHHHHHHHHTTHHHHHHHHHTT---BTTTTB---HHHHT-TT----EETTEESHHHHHHHHHHHHHHHHHHHTT-SB-TTS-B--EE CS
         PGI   1 dysknkvddeilealvklaeeaklkaarealfaGekinstenravlhvalrnrsnkpilvdGkdvvpevkevldkmkefsekvrsGewkGatgkaitdv 99 
                 d+skn +++e+l+ lvkla+ea+l++ r+++faG+kin+te+rav+hvalrn sn++++vdGk vv +v++vl++mkefse+vrsGewkG+tgk+i  +
  KKY16872.1 266 DFSKNFITEETLSLLVKLAKEANLEKLRDEMFAGDKINFTEKRAVYHVALRNVSNQSMQVDGKSVVEDVNSVLEHMKEFSEQVRSGEWKGYTGKKIDTI 364
                 9************************************************************************************************** PP

                 EEE--GGGTHHHHHHHHHTGGG-TT.-EEEEE--SSHHHHHHHHTT--GGGEEEEEE-SSS--HHHHHHHHHHHHHHHHHH--GGGGGGTEEEESS-HH CS
         PGI 100 vniGiGGsdlGPvlvtealkkeser.lkvafvsnvdgthiaevlkkldpettlfivasktfttaetllnaesakewllkalkedsavakhfvalstnae 197
                 +niGiGGsdlGPv+v ealk++ ++  k++fvsn+dgth+ae+lk+ dpettlf++asktfttaet +na++ak w+lk++ke++ +akhfvalstn+e
  KKY16872.1 365 INIGIGGSDLGPVMVSEALKPYGKKdFKLHFVSNIDGTHVAEALKDSDPETTLFLIASKTFTTAETTTNANTAKAWFLKSAKEED-IAKHFVALSTNEE 462
                 **********************99889*******************************************************776.************* PP

                 HHHHHT--GGGEEE--TTS-GGG-TTSGGGHHHHHHH-HHHHHHHHHHHHHHHHHHHHS-GGG-HHHHHHHHHHHHHHTS---EEEEEES-GGGTTHHH CS
         PGI 198 kveefGideknmfefwdwvGGryslwsaiGlsvalsiGfenfeelleGaaaidkhfleaplekniPvllalvgvwyvnflgaeteailpydqylerlaa 296
                 +v +fGid+knmf f+ wvGGrys+wsaiGlsv l+iG+enf+e+l Ga+a+d+hfl++ple+niPv+++l++vwy++f+ga+t+ + p+dqyl+r++a
  KKY16872.1 463 EVTKFGIDKKNMFGFESWVGGRYSVWSAIGLSVCLYIGYENFHEFLAGAHAMDQHFLKTPLEENIPVIAGLLSVWYSDFFGAQTHLVSPFDQYLHRFPA 561
                 *************************************************************************************************** PP

                 HHHHHHHHHH---BBTTS-B-SS--S-EEE---TTTGGGTSHHHHHHSSS---EEEEEEEE-S-.GGGGHHHHHHHHHHHHHHHHHHH-B-HHHHHHHH CS
         PGI 297 ylqqldmesnGksvtkdgvlvdvetgeiifGeagtngqhafyqlihqGtkliPcdfiaavksqn.ieiadhhkillsnffaqtealmvGkseeevkkel 394
                 ylqql+mesnGk +t  g  v+++tg+i+fGe++tn+qh+fyql+hqGtkliP+dfi+a++s+n +e ++h+++l snffaq+ealm+Gk++++vk+e 
  KKY16872.1 562 YLQQLSMESNGKAITTTGDYVKYTTGPILFGEPATNAQHSFYQLLHQGTKLIPTDFIMAAESHNpVEGGKHQRMLASNFFAQAEALMIGKTPDQVKAEG 660
                 ****************************************************************9999*****************************88 PP

                 HHTHHHHHGGGG-B-----EEEEEEEE--HHHHHHHHHHHHHHHHHHHHHHTB-TT--GGGHHHHHHHHHHHHHHSSS----SS-HHHHHHH CS
         PGI 395 akakveklvphktfeGnrPsnsillekltpaelGalialyehkilvqGviwginsfdqwGvelGkelakkilkeleasekvsdfdsstngli 486
                    ++++l+phktf GnrP++sil++k+tp +lGalia+yeh ++++G++wginsfdqwGvelGk+lak+i+kele +   +++d+st+gli
  KKY16872.1 661 ---APDELIPHKTFLGNRPTTSILAQKITPGTLGALIAYYEHLTFTEGAVWGINSFDQWGVELGKVLAKNIQKELEGG--SGEHDASTAGLI 747
                 ...789**********************************************************************99..89********98 PP

>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     2e-07    0.0018     224     285 ..      10      89 ..       3      92 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2e-07
                   HHHHHHHHHHHHHHHTT--HHHHHHHHHTTS..................TT-SEEEE--SSHHHHHHHHGGGG----HHH CS
  Aldo_ket_red 224 knldaaeelselakehgvslaqlalryalsq..................pavgivipgasnieqlednldalelklseee 285
                   + ++a++++s++  ++g+ l+ lalry l++                     gi ++g+sn+++led++++++  l++ e
    KKY16872.1  10 GLRQAVKNASDWLTTKGERLEVLALRYGLENwlregavvgvsppsletsGHLGINVIGVSNLDELEDVVRVWQEILDDHE 89 
                   578999***********************999988888888777776666**********************87777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.50
# Mc/sec: 4546.68
//
Query:       KKY16873.1  [L=153]
Description: putative mitochondrial import inner membrane translocase subunit tim-16 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-34  117.4   0.5    5.1e-34  117.0   0.5    1.0  1  Pam16     Pam16


Domain annotation for each model (and alignments):
>> Pam16  Pam16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.0   0.5   2.8e-38   5.1e-34       3     122 ..      17     141 ..      15     144 .. 0.92

  Alignments for each domain:
  == domain 1  score: 117.0 bits;  conditional E-value: 2.8e-38
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX.XXXXXXXXXXXXXXXX-HHHHHHHHT--G....--SHHHHHHHHHHHHHHT-CCCTS-HHHH CS
       Pam16   3 kraalkvivagtqvvgkalaralrqeiaaaraaadartsasereaaksnlkGisleeslkilnvee....dlnreevekryehlfevndkskGGslylq 97 
                  r++++v++ g++++g a+ +a++q+ aa++ aa+a++s + r a    ++G++l+e++kilnv+     + n+e+v +r++ l+++n+ +kGGs+ylq
  KKY16873.1  17 IRIIMQVVLSGSRAFGAAFKEAYKQAQAASSYAAEAGKSGGGRMANTRTASGLTLDEACKILNVKPpmagQTNMEQVMERFKKLYDLNEPKKGGSFYLQ 115
                 6899*************************************************************9667778*************************** PP

                 HHHHHHHHHHHHHH.HHHH-XXXXXX CS
       Pam16  98 skvfrakerldeel.kieekeekkke 122
                 sk++ra+er++ e+ + + k +++ke
  KKY16873.1 116 SKILRARERIELEVrEAQRKMAQDKE 141
                 **************555666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1072.25
//
Query:       KKY16874.1  [L=240]
Description: putative integral peroxisomal membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-11   44.0   8.4    2.1e-11   43.4   8.4    1.3  1  Pex24p         Integral peroxisomal membrane peroxin


Domain annotation for each model (and alignments):
>> Pex24p  Integral peroxisomal membrane peroxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   8.4   1.2e-15   2.1e-11     277     366 .]       1      80 [.       1      80 [. 0.89

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 1.2e-15
      Pex24p 277 lfsserydwtdetrkalkespsgvdhledvkpPe......dWkWdekkkWrlDlepdewvkeeeekkGWvYddnkwkepstedslsketRRRrwiR 366
                 ++++er++wtde   +l+++++    ++++++P+      +W+W++ ++Wr++  + ++     +k        +w++++++d++ ++tRRR+w+R
  KKY16874.1   1 MLAYERAAWTDE---NLNPASP----KDQFELPDvdgghaRWRWVDRSEWRIEGGSSDAS---FKK------PGSWNDGKRTDGWGRYTRRRKWYR 80 
                 799*********...9999999....9***************************765554...222......23499******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.53
# Mc/sec: 1368.29
//
Query:       KKY16875.1  [L=134]
Description: putative ubiquinol-cytochrome c reductase complex 17 kd protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-26   92.5   8.0    1.3e-26   92.5   8.0    1.6  1  UCR_hinge       Ubiquinol-cytochrome C reductase hinge protei
    0.00031   20.2  14.1    0.00036   20.0  14.1    1.1  1  CobT            Cobalamin biosynthesis protein CobT
     0.0086   14.6  16.0     0.0097   14.4  16.0    1.0  1  Mpp10           Mpp10 protein
  ------ inclusion threshold ------
      0.015   13.5  21.4      0.015   13.4  21.4    1.0  1  DNA_pol_phi     DNA polymerase phi
      0.015   14.5   0.8      0.017   14.4   0.8    1.1  1  DUF4471         Domain of unknown function (DUF4471)
      0.021   13.2   8.4      0.019   13.3   8.4    1.1  1  CDC45           CDC45-like protein
      0.028   14.9   3.4      0.033   14.7   3.4    1.2  1  DUF3391         Domain of unknown function (DUF3391)
       0.03   14.7   1.6      0.037   14.4   1.6    1.2  1  AIF_C           Apoptosis-inducing factor, mitochondrion-asso
      0.043   13.2  16.1      0.045   13.2  16.1    1.1  1  SDA1            SDA1
      0.078   11.2  16.6      0.079   11.2  16.6    1.0  1  Nop14           Nop14-like family
       0.26   11.1   7.2       0.28   11.0   7.2    1.1  1  XAP5            XAP5, circadian clock regulator
       0.31   10.8   8.6       0.31   10.8   8.6    1.2  1  RR_TM4-6        Ryanodine Receptor TM 4-6
       0.32   10.4   6.1       0.34   10.3   6.1    1.1  1  SpoIIP          Stage II sporulation protein P (SpoIIP)
       0.35    9.6   7.5       0.36    9.6   7.5    1.1  1  Tim54           Inner membrane protein import complex subunit
       0.38   10.0  14.8       0.43    9.9  14.8    1.1  1  BUD22           BUD22
       0.53   10.4   7.1       0.93    9.6   7.1    1.4  1  ORC_WH_C        Origin recognition complex winged helix C-ter
       0.57   10.8   3.8       0.64   10.7   3.8    1.3  1  RPA43_OB        RPA43 OB domain in RNA Pol I
       0.67    9.2  19.1        1.1    8.5  19.1    1.3  1  NOA36           NOA36 protein
        1.1    8.2   4.3        1.1    8.2   4.3    1.1  1  DUF913          Domain of Unknown Function (DUF913)
        1.3    8.2  13.7        1.8    7.7  13.7    1.2  1  TRAP_alpha      Translocon-associated protein (TRAP), alpha s
        1.3    7.7   4.5        1.4    7.6   4.5    1.1  1  SAPS            SIT4 phosphatase-associated protein
        2.4    6.9   3.9        2.5    6.8   3.9    1.0  1  Presenilin      Presenilin
        3.8    6.8  16.9        4.9    6.4  16.9    1.1  1  Nop53           Nop53 (60S ribosomal biogenesis)
        4.4    5.7   9.7        4.4    5.7   9.7    1.1  1  RRN3            RNA polymerase I specific transcription initi
        4.4    6.5   4.7        6.7    5.9   4.7    1.3  1  DUF2428         Putative death-receptor fusion protein (DUF24
        4.6    7.1   9.4        7.3    6.4   9.4    1.3  1  TLP-20          Nucleopolyhedrovirus telokin-like protein-20 
        8.1    5.3  17.7         10    5.0  17.7    1.1  1  Paf1            Paf1
        9.2    5.3  22.4        9.6    5.2  22.4    1.1  1  DUF2457         Protein of unknown function (DUF2457)
        9.7    6.2  12.2         17    5.4  12.2    1.4  1  RXT2_N          RXT2-like, N-terminal


Domain annotation for each model (and alignments):
>> UCR_hinge  Ubiquinol-cytochrome C reductase hinge protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   8.0   2.2e-29   1.3e-26       1      66 []      65     134 .]      65     134 .] 0.99

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 2.2e-29
   UCR_hinge   1 DpkeklreeCeekekCkklkkhyeeCveRVksrse....aeteedCveelfdlvhcvdhCvapklfkkLK 66 
                 Dpk+kl+e C++ +kC+ +k+hy++Cv+RV++++e    + ++edCvee+f+l hc+++C+apklf+ LK
  KKY16875.1  65 DPKPKLEEDCANGPKCATYKHHYDHCVARVTAQEEdpdhKGPKEDCVEEFFHLSHCATQCAAPKLFQILK 134
                 9*************************************9999*************************998 PP

>> CobT  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0  14.1   5.8e-07   0.00036     193     251 ..       6      65 ..       3     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 5.8e-07
        CobT 193 avrqlLqdldlaeesaeepeeedeeeeedeeeeeeeseee.eeegedddkeeqeeaasee 251
                 + +++L++l  +e  a++p e+deee++de++e++e+eee +ee+e++++ee+ee+++ +
  KKY16875.1   6 LFNDMLSSLSFTEVYADAPAEDDEEESKDEGDEDKEEEEEgDEEEEEEEEEEEEEEEPVD 65 
                 6789********999999999999999999999998776554444444444444444433 PP

>> Mpp10  Mpp10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4  16.0   1.6e-05    0.0097      94     188 ..      26     121 ..       3     126 .. 0.41

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
       Mpp10  94 eeeeesee...seeeeeeee.eeeeeeeeeeeeeeee..eeekeeseekeeeeesekeeeeededeeeeieeeekkskkkkkkkkkksvvddkFFklde 186
                 e++ee+++   +e++eeeee +eeeeeeeeeeeeeee  + +    + +e+ ++  k   + ++  +  ++  + ++++ +++k+ k++   +FF l++
  KKY16875.1  26 EDDEEESKdegDEDKEEEEEgDEEEEEEEEEEEEEEEpvDPKP---KLEEDCANGPKC-ATYKHHYDHCVARVTAQEED-PDHKGPKEDCVEEFFHLSH 119
                 2222222212222222222212222222222222222221111...222222222222.23334444444444433333.3347899999999999987 PP

       Mpp10 187 me 188
                  +
  KKY16875.1 120 CA 121
                 65 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4  21.4   2.5e-05     0.015     632     694 ..      14      75 ..       3     109 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.5e-05
  DNA_pol_phi 632 egqaelfedededeeddeeeeeeddeededseedddeeesdedeededdedvdeidelrekla 694
                   ++ e++  +   e+d+ee ++e de++e++ee d+eee++e+ee+e++e vd++ +l+e+ a
   KKY16875.1  14 LSFTEVY-ADAPAEDDEEESKDEGDEDKEEEEEGDEEEEEEEEEEEEEEEPVDPKPKLEEDCA 75 
                  5556665.3344455555555555555566666666677777777777777887668887655 PP

>> DUF4471  Domain of unknown function (DUF4471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.8   2.7e-05     0.017     162     254 ..      11     125 ..       4     134 .] 0.56

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.7e-05
     DUF4471 162 lqeletreeyklkkkksersdkveeekkekkeeeeekeeeeeakdeeeek......................eseleelekvkvkflpl..esleklke 236
                 l +l+  e y  + ++++++++++e  + k+eeee +eeeee+++eeee+                      +    + +++    +    +  +k ++
  KKY16875.1  11 LSSLSFTEVYADAPAEDDEEESKDEGDEDKEEEEEGDEEEEEEEEEEEEEeepvdpkpkleedcangpkcatY--KHHYDHCVARVTAQeeDPDHKGPK 107
                 5555656666555555555555555444333333323222222222222245899999999999999997432..333333333333331144455566 PP

     DUF4471 237 kkkyknlFdiifvsasmv 254
                 ++  +++F++ +++++++
  KKY16875.1 108 EDCVEEFFHLSHCATQCA 125
                 689999999999999886 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   8.4   3.1e-05     0.019     131     171 ..      25      62 ..       7     133 .. 0.50

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.1e-05
       CDC45 131 esdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkr 171
                  +d+e   ee++d+ de++eeeee dee+eee+eee+++++
  KKY16875.1  25 AEDDE---EESKDEGDEDKEEEEEGDEEEEEEEEEEEEEEE 62 
                 22211...122222222222222222222222221111111 PP

>> DUF3391  Domain of unknown function (DUF3391)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   3.4   5.3e-05     0.033      42     103 ..      10      79 ..       9     126 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.3e-05
     DUF3391  42 rLrasgiqeVwidtdksdeeelagldvpaaeaaeeakaaeesaeleeekqerperleaere............e 103
                  L ++  +eV+ d   +d+ee+ +++ ++ +++ee+  +ee++e+eee++e++e+ +   +             
  KKY16875.1  10 MLSSLSFTEVYADAPAEDDEEESKDEGDEDKEEEEE-GDEEEEEEEEEEEEEEEPVD---PkpkleedcangpK 79 
                 57889999***9999877666666643333333222.22222222222222222222...02224445555552 PP

>> AIF_C  Apoptosis-inducing factor, mitochondrion-associated, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.6   5.9e-05     0.037      36      96 ..      12      73 ..       5     104 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.9e-05
       AIF_C 36 ssLptvgvfakatekdtpkaaveesseesksekeeeaskekseeks.eeekkkkekkeeeed 96
                ssL+   v+a a ++d ++++++e +e++++e+e ++++e++ee++ eee+  + k++ eed
  KKY16875.1 12 SSLSFTEVYADAPAEDDEEESKDEGDEDKEEEEEGDEEEEEEEEEEeEEEEPVDPKPKLEED 73
                8999999*****99999887776666666655555544444444331334444444444554 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2  16.1   7.3e-05     0.045     136     173 ..      26      63 ..       8     119 .. 0.46

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.3e-05
        SDA1 136 sedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeee 173
                 ++deee+++e +e++e+eee +eeeeeeeeeeeeeee 
  KKY16875.1  26 EDDEEESKDEGDEDKEEEEEGDEEEEEEEEEEEEEEEP 63 
                 23333333322222222222222211111222222111 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2  16.6   0.00013     0.079     350     396 ..      27      67 ..       7     120 .. 0.45

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
       Nop14 350 ededdfeedddlveseseeeeeeeeedeeeeedeeeeeeeeededdl 396
                 +de++   ++   ++++e++eeeee deeeee+eeeeeeeee  d +
  KKY16875.1  27 DDEEE---SK---DEGDEDKEEEEEGDEEEEEEEEEEEEEEEPVDPK 67 
                 11111...11...1111111112222222222222222222222222 PP

>> XAP5  XAP5, circadian clock regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   7.2   0.00046      0.28      15      53 ..      27      73 ..       8     122 .. 0.38

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00046
        XAP5 15 ddeeeeeeeekakkkeeeekkeesekkeekekeeeeee..........k 53
                ddeee+++e +++k+eeee +ee  ++ee+e+eeeeee           
  KKY16875.1 27 DDEEESKDEGDEDKEEEEEGDEE--EEEEEEEEEEEEEpvdpkpkleeD 73
                11111111111222222222222..122222222222233333333220 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   8.6    0.0005      0.31      96     147 ..      26      74 ..       1     114 [. 0.43

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0005
                 XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXXXX CS
    RR_TM4-6  96 aeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkkkk 147
                 +++e+e+++e   e+  k+++e+g++ee+e+e+eeee+e++++ ++k  +  
  KKY16875.1  26 EDDEEESKDE-GDED--KEEEEEGDEEEEEEEEEEEEEEEPVDPKPKLEEDC 74 
                 1111111111.1111..11222222222222223333333333333333333 PP

>> SpoIIP  Stage II sporulation protein P (SpoIIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   6.1   0.00054      0.34      17      71 ..      18      72 ..       3     109 .. 0.49

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00054
      SpoIIP 17 epteeapaeesekeekekeeeeeeekeeeeeeeikkeekeeekekee.dseeeeek 71
                e  ++apae++e+e+k++ +e++ee+e e +ee+++ee+eee+e+e  d + + e+
  KKY16875.1 18 EVYADAPAEDDEEESKDEGDEDKEEEE-EGDEEEEEEEEEEEEEEEPvDPKPKLEE 72
                333334444433333333333333333.3333333333333333333344444443 PP

>> Tim54  Inner membrane protein import complex subunit Tim54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   7.5   0.00058      0.36     210     254 ..      26      70 ..      10     114 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00058
       Tim54 210 eekeeeeeeeeeeeeekeeekeeekeeeeeeeekekkkkvpkpyi 254
                 e++eee+++e +e++e+eee +ee+eeeeeeee+e+++  pkp +
  KKY16875.1  26 EDDEEESKDEGDEDKEEEEEGDEEEEEEEEEEEEEEEPVDPKPKL 70 
                 222222222222333334444444444444444444555555544 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  14.8   0.00069      0.43     169     205 ..      26      73 ..      10     118 .. 0.40

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00069
       BUD22 169 sdkeeesedsed.eekeeseddeeeeeededdedaee..........d 205
                 +d eees+d+ d +++ee+e deeeeee+e++e++ee          d
  KKY16875.1  26 EDDEEESKDEGDeDKEEEEEGDEEEEEEEEEEEEEEEpvdpkpkleeD 73 
                 122222222222112222222222222222222222233444544321 PP

>> ORC_WH_C  Origin recognition complex winged helix C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   7.1    0.0015      0.93      57     103 ..      15      61 ..       2      65 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0015
    ORC_WH_C  57 aFkqvlekereedkeseaeeeekakeeeaekkkkkkekeedeedeee 103
                 +F++v  +   ed+e+e+++e+++++ee+e+ ++++e+ee+ee+eee
  KKY16875.1  15 SFTEVYADAPAEDDEEESKDEGDEDKEEEEEGDEEEEEEEEEEEEEE 61 
                 67788777777777776666666544444444444444444433333 PP

>> RPA43_OB  RPA43 OB domain in RNA Pol I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.8     0.001      0.64      44      80 ..      24      60 ..       3     109 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.001
                ...CSS------------------------------- CS
    RPA43_OB 44 paekkkekgkkaeeeeeeeeeeadaekeeeeelekae 80
                pae+++e++k++ +e++eeeee d+e+eeeee+e++e
  KKY16875.1 24 PAEDDEEESKDEGDEDKEEEEEGDEEEEEEEEEEEEE 60
                4454444444443333333333333333333322222 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  19.1    0.0018       1.1     257     301 ..      17      61 ..       4      67 .. 0.45

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0018
       NOA36 257 daylkalasgddeddegdedddddddeedddeeeddedeeeeeee 301
                 ++ ++   ++dde+++ de d+d+++ee+ deee++e+eeeeeee
  KKY16875.1  17 TEVYADAPAEDDEEESKDEGDEDKEEEEEGDEEEEEEEEEEEEEE 61 
                 444444344444444444444443333333333333333333333 PP

>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.3    0.0017       1.1     282     307 ..      27      62 ..       4     115 .. 0.49

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0017
      DUF913 282 etkeeekssededvemeda..........eeetese 307
                 +++ee+k++ ded+e+e++          eee+e+e
  KKY16875.1  27 DDEEESKDEGDEDKEEEEEgdeeeeeeeeEEEEEEE 62 
                 222222222222211111111000000001111111 PP

>> TRAP_alpha  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  13.7    0.0029       1.8      19      74 ..      15      69 ..       4      77 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0029
  TRAP_alpha 19 satkvvaaaaaeedevddelvdveaedeeveeeeeeeeeeee.eeeedeeelkaspd 74
                s t+v a a ae+de +  ++d   ed+e+eee +eeeeeee eeee+ee ++++p+
  KKY16875.1 15 SFTEVYADAPAEDDEEE--SKDEGDEDKEEEEEGDEEEEEEEeEEEEEEEPVDPKPK 69
                44555555666665433..34545555555555555444444244444445555554 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.5    0.0023       1.4     295     337 ..      26      68 ..       5     129 .. 0.46

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0023
        SAPS 295 leesksakdenkesdesesdtaeesseededdasseesalaee 337
                 +++++++kde +e++e+e++ +ee++ee+e+++++ee+++ + 
  KKY16875.1  26 EDDEEESKDEGDEDKEEEEEGDEEEEEEEEEEEEEEEPVDPKP 68 
                 2233333333333333333333333333333334333332222 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   3.9     0.004       2.5     250     289 ..      30      60 ..       6     113 .. 0.41

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.004
  Presenilin 250 esskeeeseeesseksaqsseseeeseeesseaessaees 289
                 e+sk+e +e++++e+++ ++         ++e+e+++ee+
  KKY16875.1  30 EESKDEGDEDKEEEEEGDEE---------EEEEEEEEEEE 60 
                 11111111111111111110.........00000000011 PP

>> Nop53  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  16.9    0.0079       4.9     230     275 ..      23      65 ..      16      84 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0079
       Nop53 230 ataeareeelseekdegleeeeeeeeeeeeeeeeeeeeseeeekln 275
                 a ae+ eee+ +e de++eeeee++eeeeeeeeeeeee+   e + 
  KKY16875.1  23 APAEDDEEESKDEGDEDKEEEEEGDEEEEEEEEEEEEEE---EPVD 65 
                 445555555555555445444444444444333333322...2222 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   9.7    0.0072       4.4     222     264 ..      27      62 ..      11     119 .. 0.49

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0072
        RRN3 222 deedeeleeeleededdedddeddeesdlddlssdeeaeedee 264
                 d+e+e+++e       ded++e++ e d ++++++ee+ee+ee
  KKY16875.1  27 DDEEESKDEG------DEDKEEEE-EGDEEEEEEEEEEEEEEE 62 
                 2222211111......11111111.111111112212222222 PP

>> DUF2428  Putative death-receptor fusion protein (DUF2428)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   4.7     0.011       6.7      21      61 ..      19      62 ..       2      71 .. 0.47

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.011
     DUF2428 21 vsssspegllpedldseeesaeeeee...eeeeeeeekkekeek 61
                v +++p +  +e++++e ++++eeee   eeeeeeee++e+ee+
  KKY16875.1 19 VYADAPAEDDEEESKDEGDEDKEEEEegdEEEEEEEEEEEEEEE 62
                55677776555555555555433333343222222222233232 PP

>> TLP-20  Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   9.4     0.012       7.3     118     161 ..      21      69 ..       8      76 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.012
      TLP-20 118 lsapv.....eksssededdeddededeaakiesnsdseesepssaKkq 161
                 ++ap+     e++++ ded+e++e++de+++ e+++++ee+ep+ +K++
  KKY16875.1  21 ADAPAeddeeESKDEGDEDKEEEEEGDEEEEEEEEEEEEEEEPVDPKPK 69 
                 4556544322333333333444455566666666678888889988875 PP

>> Paf1  Paf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  17.7     0.017        10     365     409 ..      26      63 ..       7      79 .. 0.41

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.017
        Paf1 365 eeeeeeeeeeeeekseeeeekeeekeeaeeeseaeseeessdeee 409
                 e++eee ++       e +e++ee+ee +ee+e+e+eee+++ee+
  KKY16875.1  26 EDDEEESKD-------EGDEDKEEEEEGDEEEEEEEEEEEEEEEP 63 
                 222222222.......22222222222222222222222222222 PP

>> DUF2457  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  22.4     0.015       9.6      50      87 ..      25      62 ..       9     103 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.015
     DUF2457 50 aeeeeeeeeddeedeeddddddddedddedddeedede 87
                ae++eee+ d+ +++++++++ d+e+++e+++ee+e+e
  KKY16875.1 25 AEDDEEESKDEGDEDKEEEEEGDEEEEEEEEEEEEEEE 62
                22322222222222222222222222222222222222 PP

>> RXT2_N  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  12.2     0.028        17      55      89 ..      30      64 ..      10      73 .. 0.48

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.028
      RXT2_N 55 kekekeekeeeeedeegdeededdddeeeaeaaee 89
                +e+++e +e++ee+eegdee+e++++eee+e++ +
  KKY16875.1 30 EESKDEGDEDKEEEEEGDEEEEEEEEEEEEEEEPV 64
                22233333333444444444433333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1452  (0.0809861); expected 358.6 (0.02)
Passed bias filter:                      710  (0.0396006); expected 358.6 (0.02)
Passed Vit filter:                       219  (0.0122148); expected 17.9 (0.001)
Passed Fwd filter:                        65  (0.00362541); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 969.25
//
Query:       KKY16876.1  [L=512]
Description: putative v-type b [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-67  226.8   0.0    3.1e-67  226.3   0.0    1.2  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
      7e-13   48.9   0.3    1.4e-12   47.9   0.3    1.5  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do
  ------ inclusion threshold ------
       0.16   12.1   0.0       0.39   10.9   0.0    1.6  1  DUF5535        Family of unknown function (DUF5535)


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.3   0.0   5.2e-71   3.1e-67       1     213 []     143     370 ..     143     370 .. 0.98

  Alignments for each domain:
  == domain 1  score: 226.3 bits;  conditional E-value: 5.2e-71
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS.............S.EEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsd.............d.aiiyvgiGergnevaevleefpegtimkrtvlvantsnepva 84 
                  Gi+++D++ +i++Gq++ i++a+g+++++i++++++q+                +  i+++++G ++++ + + ++f+e++ m+r++l++n +n+p++
   KKY16876.1 143 GISAIDTMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVkkptkgvhdgheeNfSIVFAAMGVNMETSRFFTRDFEENGSMERVTLFMNLANDPTI 240
                  89***********************************8766899********98789***************************************** PP

                  HHHHHHHHHHHHHHHHHH.TTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCSTTSHHHH CS
                  xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  85 areasiytgitlAEyfrd.qgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggDfsdpvtt 181
                  +r++++++++t+AEy+++  +k+vl+i+++ls +++Alre+s++ +e+p+++gyp+y++++l+++yERag+++ r+Gs+t++++++++++D+++p+++
   KKY16876.1 241 ERIITPRLALTTAEYYAYqLEKHVLVILTDLSAYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDITHPIPD 338
                  *****************9679***************************************************************************** PP

                  HHHHHSSEEEEB-HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 182 atlgitdgfivLdkklaqrkhfPainvlvSvS 213
                   t +it+g+i++d++l ++++ Painvl S+S
   KKY16876.1 339 LTGYITEGQIFIDRQLYNKGVNPAINVLPSLS 370
                  ******************************98 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.3   2.3e-16   1.4e-12       4      69 .]      23      86 ..      20      86 .. 0.94

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 2.3e-16
                   EETTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBT.TSEEEEES CS
  ATP-synt_ab_N  4 viGpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsr.GteVkrTG 69
                   v+Gp+v+ ++++   p ++++++  l++ g+ + g++l+ ++++++v+v+++t+G+++  t+V++ G
     KKY16876.1 23 VNGPLVILDNVKF--PRYNEIVSLTLPD-GSERSGQVLEARGNRAVVQVFEGTSGIDVkKTKVEFSG 86
                   99******99999..999999999988*.***********************************987 PP

>> DUF5535  Family of unknown function (DUF5535)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.5e-05      0.39      42      78 ..     450     486 ..     440     503 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.5e-05
     DUF5535  42 lgwllsrgvrreqvdrlptkvllelyikeakrsrgra 78 
                 l+w l r  ++eq++r p k+l e+y ++  +  gr 
  KKY16876.1 450 LAWNLLRIFPKEQLNRIPKKILDEFYARKPSKKGGRD 486
                 89************************99887776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3580.44
//
Query:       KKY16877.1  [L=243]
Description: hypothetical protein UCRPC4_g05835 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-10   40.2   0.2    1.2e-09   38.3   0.2    1.9  1  Glu-tRNAGln  Glu-tRNAGln amidotransferase C subunit
  ------ inclusion threshold ------
      0.011   14.7   0.0      0.011   14.6   0.0    1.1  1  Mus7         Mus7/MMS22 family


Domain annotation for each model (and alignments):
>> Glu-tRNAGln  Glu-tRNAGln amidotransferase C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.2   1.3e-13   1.2e-09       2      62 .]     116     222 ..     116     222 .. 0.82

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 1.3e-13
                  -HHHHHHHHHHHHHHHHHHTTCGCS--TT----S..-EB-S--............................................HHHH.....HT CS
  Glu-tRNAGln   2 seeEleklakelnsildyveqLqevdttgveplthpvlReDev............................................reel.....Lk 50 
                  ++eE+ +++k+l+s++++v+++q+v t+gvepl+++   +De                                             ++++     L+
   KKY16877.1 116 TPEEELDMLKTLSSQIHFVKEVQAVSTDGVEPLRAI---RDETaegiknatigldqmkeyldqeevvgrngrirwkkastlpkgqqkKKDIpdwdpLE 210
                  79**********************************...55523466777777777777777777889999889888888888888644457778899 PP

                  T-SSEETTEEEE CS
  Glu-tRNAGln  51 nApetedgyfvV 62 
                   A e+++++fvV
   KKY16877.1 211 LAQEKRGRFFVV 222
                  999999999998 PP

>> Mus7  Mus7/MMS22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.3e-06     0.011     288     365 ..      60     155 ..      37     221 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.3e-06
        Mus7 288 aeknkrtveslLkvalrslqdvi..qtsktleaanlllskaqlkqilellksleprvnqealkviqtfllqpaltteeq................q 365
                    +k ++ +lL     s+ +++  q+s t+ a n  ++++ql+++l+l+ + +pr  +e l++++t+ +q++  +e q                +
  KKY16877.1  60 SRLSKDEISDLLSKPTWSVRSLLpdQSSSTTHASNGEITPTQLRHLLRLSALPQPRTPEEELDMLKTLSSQIHFVKEVQavstdgveplrairdeT 155
                 56789999999999999999999999******************************************9888777777755555555555555550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1731.87
//
Query:       KKY16878.1  [L=293]
Description: putative vesicular-fusion protein sec17 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     1e-113  379.5  14.8   1.1e-113  379.3  14.8    1.0  1  SNAP           Soluble NSF attachment protein, SNAP
    1.3e-09   38.2  11.1    4.4e-05   23.7   1.1    3.7  3  TPR_12         Tetratricopeptide repeat
    0.00012   21.9  10.2       0.77    9.9   0.0    5.1  6  TPR_7          Tetratricopeptide repeat
    0.00033   20.6   8.2        1.7    9.0   0.9    4.4  3  TPR_8          Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.017   15.2  20.3       0.37   11.0   1.5    6.2  7  TPR_2          Tetratricopeptide repeat
      0.018   15.6  14.7         12    6.7   0.1    5.8  6  TPR_6          Tetratricopeptide repeat
       0.36   10.7  15.3       0.18   11.7   1.4    5.2  5  TPR_1          Tetratricopeptide repeat
       0.59    9.9   2.8        5.3    6.8   0.0    2.4  2  eIF3m_C_helix  eIF3 subunit M, C-terminal helix
          4    8.0   6.9         79    4.0   0.0    4.1  4  TPR_17         Tetratricopeptide repeat
        4.1    7.4   9.0        5.5    7.0   0.2    3.7  4  TPR_10         Tetratricopeptide repeat
        6.2    6.9  11.9         10    6.2   0.4    4.6  5  TPR_3          Tetratricopeptide repeat
        6.3    7.5  19.6         11    6.7   0.4    4.5  3  TPR_16         Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> SNAP  Soluble NSF attachment protein, SNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  379.3  14.8  7.6e-117  1.1e-113       2     282 .]       4     286 ..       3     286 .. 0.99

  Alignments for each domain:
  == domain 1  score: 379.3 bits;  conditional E-value: 7.6e-117
                 -HHHHHHHHHHHSS---THHHHH--SHHHHHHHHHHHHHHHHHHHHTT-THHHHHHHHHHHHHHHH.TT-HHHHHHHHHHHHHHHHHT-HHHHHHHHHH CS
        SNAP   2 kaeellakAekklksssglfslfgsksskaeeAadlyeqAAnayklakkweeAgeaflkaAecqek.lkekdeaanayveAakcykkvspeeAvealek 99 
                 ++++ll+kA+k+l++++g fs+fg++++k+e+Aadly+qAAna++++k+++eAg+af+kaA++q++ l+e+d+ an+++eA+k+y+k++pe+A+++l +
  KKY16878.1   4 DPRALLQKADKTLSGAGGGFSFFGGRTEKYENAADLYTQAANAFRMQKQNKEAGQAFEKAAQIQSQkLSEPDDMANTLTEAFKVYRKENPEDAARVLAQ 102
                 7899************************************************************998******************************** PP

                 HHHHHHHTT-HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-TTTGGGHHHH CS
        SNAP 100 AieiytekgrfrraAklkkeiaelyekelgdlekAieaYekAaelyeqeeakalankcllkvAelsaelekyekAieiyekvakkslennllkysvkey 198
                 Ai++yt kg+frraA+ ++++ae+ye e+gd ++A+eaYe Aa ++e+++a+alank++lkvA+l+a +++y+kAie +e va++s++nnl+k+svk+y
  KKY16878.1 103 AINHYTLKGNFRRAATWQQNLAEVYEVEIGDQKRALEAYELAAGWFESDNAEALANKLYLKVADLAALEGDYQKAIERFEGVARSSVNNNLMKWSVKDY 201
                 *************************************************************************************************** PP

                 HHHHHHHHHHTT-HHHHHHHHH.GGG-----------HHHHHHHHHHHHTT-TTTHHHHHHHHTTSS---HHHHHHHHHHHHHHH CS
        SNAP 199 flkaglcrLaagDvvaakrale.kyeeldpsFassrEakllkdlleaveegdvekfteavkefDkiskldkWkttlLlkiKksie 282
                 +lkag+c++a+gD va++ral+  y eld++F+s+rE+ ll+dl++a+e+gd+e f+++++++D++skld+WkttlLlk+K+sie
  KKY16878.1 202 LLKAGICHMASGDIVATQRALQsTYLELDSTFQSTREYLLLSDLVSAIEAGDQESFADKLFQYDQLSKLDRWKTTLLLKVKNSIE 286
                 ********************98469**********************************************************96 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   1.1   2.9e-08   4.4e-05       3      75 ..      37     107 ..      35     109 .. 0.92
   2 !   17.0   1.4   3.5e-06    0.0052      15      71 ..      89     144 ..      88     150 .. 0.87
   3 !    7.9   0.1    0.0025       3.8       5      27 ..     160     182 ..     155     188 .. 0.68

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2.9e-08
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleia.rrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 a ++++ a++ r +++  eA + +eka +i+ ++l +pd    a+tl     +yr+  ++e+A + l +a++ +
  KKY16878.1  37 ADLYTQAANAFRMQKQNKEAGQAFEKAAQIQsQKLSEPDD--MANTLTEAFKVYRKE-NPEDAARVLAQAINHY 107
                 6788899************************888999998..***********9666.************9987 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 3.5e-06
      TPR_12  15 rlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyr.algryeeAlelleea 71 
                 r ++ ++A + l +a++ ++ l G  +  +at ++nL+++y+ + g+++ Ale++e a
  KKY16878.1  89 RKENPEDAARVLAQAINHYT-LKGNFR-RAATWQQNLAEVYEvEIGDQKRALEAYELA 144
                 67899**************6.456676.99***********66************976 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0025
      TPR_12   5 alnnlaavlrrlgrydeAlelle 27 
                 ++ ++a++ +  g+y++A+e +e
  KKY16878.1 160 LYLKVADLAALEGDYQKAIERFE 182
                 44457777777777777777776 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.2    0.0012       1.8      13      34 ..      31      53 ..      29      55 .. 0.81
   2 ?   -0.3   0.0      0.98   1.5e+03      14      24 ..      92     102 ..      63     111 .. 0.71
   3 ?   -1.1   0.0       1.7   2.5e+03      12      20 ..     110     118 ..     105     129 .. 0.71
   4 ?    5.4   0.2     0.014        21       4      31 ..     122     151 ..     118     156 .. 0.79
   5 !    9.9   0.0   0.00051      0.77       6      31 ..     165     188 ..     160     192 .. 0.76
   6 ?   -2.7   0.0       5.4   8.1e+03       1      15 [.     225     239 ..     225     239 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0012
       TPR_7 13 GdyeeAielyeqsL.altkdped 34
                 +ye+A++ly+q+  a++ + ++
  KKY16878.1 31 EKYENAADLYTQAAnAFRMQKQN 53
                68**********99998877665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.98
       TPR_7  14 dyeeAielyeq 24 
                 + e+A++++ q
  KKY16878.1  92 NPEDAARVLAQ 102
                 55666666655 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.7
       TPR_7  12 lGdyeeAie 20 
                  G++++A++
  KKY16878.1 110 KGNFRRAAT 118
                 677777765 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.014
       TPR_7   4 nLarlysr.lGdyeeAielyeqsL.altkd 31 
                 nLa++y+   Gd ++A+e ye +   +++d
  KKY16878.1 122 NLAEVYEVeIGDQKRALEAYELAAgWFESD 151
                 7888877669***********977666665 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.00051
       TPR_7   6 arlysrlGdyeeAielyeqsLaltkd 31 
                 a+l   +Gdy++Aie +e   + +++
  KKY16878.1 165 ADLAALEGDYQKAIERFEG--VARSS 188
                 5666678***********8..66655 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 5.4
       TPR_7   1 aLlnLarlysrlGdy 15 
                 ++l L +++++ ++y
  KKY16878.1 225 TYLELDSTFQSTREY 239
                 688899999999987 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.9    0.0012       1.7       1      32 [.      37      68 ..      30      70 .. 0.93
   2 !    7.9   0.1    0.0027         4       5      30 ..     121     147 ..     120     151 .. 0.89
   3 ?    5.3   0.1     0.019        28       3      22 ..     160     179 ..     159     186 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0012
                CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8  1 aeayynlgsiylklgdyeeAkeyyekaleldp 32
                a++y + +++ + +++ +eA +++eka +++ 
  KKY16878.1 37 ADLYTQAANAFRMQKQNKEAGQAFEKAAQIQS 68
                689999*********************99976 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0027
                 HHHHHHH.HHTT-HHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiy.lklgdyeeAkeyyekalel 30 
                 +nl+ +y  + gd + A e+ye a  +
  KKY16878.1 121 QNLAEVYeVEIGDQKRALEAYELAAGW 147
                 58999*****************99765 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.019
                 HHHHHHHHHHHTT-HHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAke 22 
                 +y++ +++    gdy++A+e
  KKY16878.1 160 LYLKVADLAALEGDYQKAIE 179
                 799999*************8 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.083   1.2e+02      14      28 ..      30      44 ..      29      45 .. 0.87
   2 ?   11.0   1.5   0.00025      0.37       1      31 [.      37      67 ..      37      69 .. 0.91
   3 ?    3.4   0.0     0.067     1e+02      12      30 ..      88     106 ..      83     109 .. 0.89
   4 ?   -0.8   0.0       1.5   2.3e+03      11      25 ..     107     121 ..     105     128 .. 0.64
   5 ?    1.5   0.7      0.28   4.2e+02      15      27 ..     132     144 ..     117     145 .. 0.84
   6 ?    7.6   0.3    0.0031       4.6       3      25 ..     160     182 ..     158     186 .. 0.86
   7 ?   -0.9   0.0       1.6   2.4e+03       3      16 ..     201     214 ..     200     216 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.083
       TPR_2 14 lgdyeeAleafekAl 28
                  +ye A++++ +A 
  KKY16878.1 30 TEKYENAADLYTQAA 44
                579**********95 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00025
       TPR_2  1 aealynlGlayyklgdyeeAleafekAleld 31
                a+++ + ++a + +++ +eA +afekA ++ 
  KKY16878.1 37 ADLYTQAANAFRMQKQNKEAGQAFEKAAQIQ 67
                6788999********************9985 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.067
       TPR_2  12 yklgdyeeAleafekAlel 30 
                 y++ ++e+A++ + +A+ +
  KKY16878.1  88 YRKENPEDAARVLAQAINH 106
                 7899************976 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.5
       TPR_2  11 yyklgdyeeAleafe 25 
                 y  +g++ +A+ + +
  KKY16878.1 107 YTLKGNFRRAATWQQ 121
                 556788888876654 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.28
       TPR_2  15 gdyeeAleafekA 27 
                 gd ++Alea+e A
  KKY16878.1 132 GDQKRALEAYELA 144
                 88999*****977 PP

  == domain 6  score: 7.6 bits;  conditional E-value: 0.0031
       TPR_2   3 alynlGlayyklgdyeeAleafe 25 
                 ++   +++++  gdy++A+e fe
  KKY16878.1 160 LYLKVADLAALEGDYQKAIERFE 182
                 6777899999*********9887 PP

  == domain 7  score: -0.9 bits;  conditional E-value: 1.6
       TPR_2   3 alynlGlayyklgd 16 
                 +l   G +++++gd
  KKY16878.1 201 YLLKAGICHMASGD 214
                 577789*****998 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       1.2   1.8e+03      15      28 ..      32      45 ..      22      47 .. 0.74
   2 ?    3.9   1.0     0.064        96       6      27 ..      43      64 ..      39      68 .. 0.84
   3 ?    3.2   0.0      0.12   1.7e+02       9      30 ..      87     107 ..      86     107 .. 0.88
   4 ?    5.0   0.2     0.029        44       5      24 ..     122     142 ..     118     145 .. 0.87
   5 ?    6.7   0.1    0.0083        12       3      27 ..     161     185 ..     159     188 .. 0.81
   6 ?    1.8   0.0      0.32   4.7e+02       2      24 ..     201     223 ..     200     225 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1.2
                HHHHHHHHHHHHHH CS
       TPR_6 15 dtdkAlealerlik 28
                ++++A +++ +  +
  KKY16878.1 32 KYENAADLYTQAAN 45
                78899999998766 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.064
                HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  6 lalsyrklgdtdkAlealerli 27
                +a ++r++++  +A +a+e+  
  KKY16878.1 43 AANAFRMQKQNKEAGQAFEKAA 64
                678889999**********976 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHHHHHHHHH- CS
       TPR_6   9 syrklgdtdkAlealerlikeY 30 
                  yrk  ++++A + l + i+ Y
  KKY16878.1  87 VYRKE-NPEDAARVLAQAINHY 107
                 58899.99*********99987 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.029
                 HHHHHHHH.HHHHHHHHHHHH CS
       TPR_6   5 klalsyrk.lgdtdkAleale 24 
                 +la+ y+   gd  +Alea+e
  KKY16878.1 122 NLAEVYEVeIGDQKRALEAYE 142
                 69999995489*********8 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.0083
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerli 27 
                 ++k a +    gd++kA+e +e + 
  KKY16878.1 161 YLKVADLAALEGDYQKAIERFEGVA 185
                 578887777778********99765 PP

  == domain 6  score: 1.8 bits;  conditional E-value: 0.32
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAleale 24 
                  l+k++ ++ + gd  +  +al+
  KKY16878.1 201 YLLKAGICHMASGDIVATQRALQ 223
                 599*******9779998888888 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2     0.086   1.3e+02      15      27 ..      31      43 ..      29      44 .. 0.91
   2 ?   11.7   1.4   0.00012      0.18       1      31 [.      37      67 ..      37      70 .. 0.92
   3 ?   -1.7   0.0         2     3e+03      10      17 ..     106     113 ..      97     117 .. 0.58
   4 ?    0.8   0.2      0.33     5e+02      15      27 ..     132     144 ..     130     145 .. 0.82
   5 ?    4.0   0.2     0.031        47      12      22 ..     169     179 ..     159     182 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.086
                T-HHHHHHHHHHH CS
       TPR_1 15 gkydeAleyyekA 27
                +ky+ A + y +A
  KKY16878.1 31 EKYENAADLYTQA 43
                69*********99 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00012
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1  1 akalynlGnayfklgkydeAleyyekALeln 31
                a+ + + +na++ +++ +eA +++ekA +++
  KKY16878.1 37 ADLYTQAANAFRMQKQNKEAGQAFEKAAQIQ 67
                6889999********************9987 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2
                 HHHHTT-H CS
       TPR_1  10 ayfklgky 17 
                  y  +g++
  KKY16878.1 106 HYTLKGNF 113
                 35555555 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.33
                 T-HHHHHHHHHHH CS
       TPR_1  15 gkydeAleyyekA 27 
                 g+ + Ale+ye A
  KKY16878.1 132 GDQKRALEAYELA 144
                 67789*****966 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.031
                 HHTT-HHHHHH CS
       TPR_1  12 fklgkydeAle 22 
                    g+y++A+e
  KKY16878.1 169 ALEGDYQKAIE 179
                 56788888887 PP

>> eIF3m_C_helix  eIF3 subunit M, C-terminal helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0036       5.3      16      28 ..     117     129 ..     117     129 .. 0.92
   2 ?    2.3   0.8      0.09   1.3e+02      13      22 ..     268     277 ..     267     278 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0036
  eIF3m_C_helix  16 daWksnLanVleV 28 
                    ++W+ nLa+V eV
     KKY16878.1 117 ATWQQNLAEVYEV 129
                    59********998 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.09
  eIF3m_C_helix  13 trLdaWksnL 22 
                    ++Ld Wk++L
     KKY16878.1 268 SKLDRWKTTL 277
                    79******98 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.5     0.066        99       9      32 ..      33      56 ..      30      58 .. 0.86
   2 ?    4.0   0.0     0.053        79      17      34 .]     121     139 ..     120     139 .. 0.90
   3 ?    0.7   0.3      0.58   8.7e+02      20      33 ..     165     178 ..     149     179 .. 0.63
   4 ?   -0.8   0.0       1.7   2.6e+03       2       8 ..     174     180 ..     173     181 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.066
      TPR_17  9 dPnnadaynnLAelllknGdlmtA 32
                + n ad+y++ A++++++++ ++A
  KKY16878.1 33 YENAADLYTQAANAFRMQKQNKEA 56
                56779***************9998 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.053
      TPR_17  17 nnLAelll.knGdlmtArq 34 
                 +nLAe+++ ++Gd ++A++
  KKY16878.1 121 QNLAEVYEvEIGDQKRALE 139
                 69*****88*******985 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.58
      TPR_17  20 AelllknGdlmtAr 33 
                 A l +  Gd+++A+
  KKY16878.1 165 ADLAALEGDYQKAI 178
                 44445778888876 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.7
      TPR_17   2 ylkalel 8  
                 y+ka+e+
  KKY16878.1 174 YQKAIER 180
                 99***97 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.2    0.0037       5.5       3      38 ..      38      74 ..      36      76 .. 0.81
   2 ?    0.6   0.0      0.39   5.9e+02       8      31 ..      77      99 ..      75     106 .. 0.73
   3 ?    3.3   0.5     0.055        82       2      28 ..     117     144 ..     116     145 .. 0.89
   4 ?   -3.4   0.0       6.7     1e+04      24      30 ..     173     179 ..     171     182 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0037
      TPR_10  3 sslnNLanalrqrgrydeAealleealai.rrrllGp 38
                  ++  ana r +++ +eA + +e+a +i  ++l +p
  KKY16878.1 38 DLYTQAANAFRMQKQNKEAGQAFEKAAQIqSQKLSEP 74
                5677789**********************55555445 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.39
      TPR_10  8 LanalrqrgrydeAealleealai 31
                +an+l++ ++  + e++ e+a ++
  KKY16878.1 77 MANTLTEAFKVYRKENP-EDAARV 99
                78888888888888888.666655 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.055
      TPR_10   2 AsslnNLanal.rqrgrydeAealleea 28 
                 A+ + NLa ++  + g+ ++A++ +e a
  KKY16878.1 117 ATWQQNLAEVYeVEIGDQKRALEAYELA 144
                 78899******99*******99999865 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 6.7
      TPR_10  24 lleeala 30 
                 ++++a++
  KKY16878.1 173 DYQKAIE 179
                 4555555 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.4     0.007        10      15      33 ..      31      47 ..      29      48 .. 0.87
   2 ?   -2.7   0.1       4.4   6.6e+03      11      21 ..      87      97 ..      84     107 .. 0.58
   3 ?   -0.8   0.1       1.1   1.6e+03      20      29 ..     137     144 ..     133     146 .. 0.65
   4 ?    3.7   0.0     0.043        65      14      23 ..     171     180 ..     166     184 .. 0.85
   5 ?    1.5   0.0      0.21   3.2e+02      23      35 ..     261     273 ..     258     274 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.007
                T-HHHHHHH..HHHHHHH- CS
       TPR_3 15 kkyqeArelfsYallaild 33
                +ky+ A++l  Y ++a+ +
  KKY16878.1 31 EKYENAADL--YTQAANAF 47
                89*******..88**9875 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.4
                HHHTT-HHHHH CS
       TPR_3 11 fynkkkyqeAr 21
                +y k++ ++A+
  KKY16878.1 87 VYRKENPEDAA 97
                66666655555 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.1
                 HHHH..HHHH CS
       TPR_3  20 ArelfsYall 29 
                 A+e+  Y+l+
  KKY16878.1 137 ALEA--YELA 144
                 6677..6666 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.043
                 TT-HHHHHHH CS
       TPR_3  14 kkkyqeArel 23 
                  ++yq+A+e 
  KKY16878.1 171 EGDYQKAIER 180
                 69******96 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.21
                 H..HHHHHHH-TT CS
       TPR_3  23 lfsYallaildke 35 
                 lf+Y +l +ld +
  KKY16878.1 261 LFQYDQLSKLDRW 273
                 89********987 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.7     0.087   1.3e+02      33      62 ..      36      65 ..      29      72 .. 0.62
   2 ?    5.6   4.5     0.016        25       8      61 ..      88     145 ..      87     155 .. 0.82
   3 ?    6.7   0.4    0.0074        11      33      57 ..     157     181 ..     149     191 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.087
      TPR_16 33 aaeAllllgdaalrqgrlaeAaalyraalr 62
                aa+ +   ++a+  q+  +eA +++++a++
  KKY16878.1 36 AADLYTQAANAFRMQKQNKEAGQAFEKAAQ 65
                445555556666667777777766666654 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.016
      TPR_16   8 lragdyddAaaaleaalkrdpssPd......aaeAllllgdaalrq.grlaeAaalyraal 61 
                 +r  +++dAa++l +a+  +    +      aa ++ +l++++ +  g+ ++A+++y+ a+
  KKY16878.1  88 YRKENPEDAARVLAQAINHYT---LkgnfrrAATWQQNLAEVYEVEiGDQKRALEAYELAA 145
                 577899*******99998883...2244777*************767*******9999976 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0074
      TPR_16  33 aaeAllllgdaalrqgrlaeAaaly 57 
                 a   +l  +d+a+  g++++A++ +
  KKY16878.1 157 ANKLYLKVADLAALEGDYQKAIERF 181
                 5667888899999999999998644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1083  (0.0604049); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.50
# Mc/sec: 1770.10
//
Query:       KKY16879.1  [L=993]
Description: putative membrane transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-58  196.3   0.0    1.2e-57  195.7   0.0    1.1  1  p450      Cytochrome P450
    3.7e-23   82.0  32.1    5.1e-23   81.6  32.1    1.1  1  MFS_1     Major Facilitator Superfamily
    3.5e-17   62.4  26.3      7e-17   61.4  26.3    1.5  1  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
        7.9    6.1  13.5        3.8    7.1   0.1    3.4  3  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.7   0.0   2.7e-61   1.2e-57      36     432 ..     551     950 ..     542     955 .. 0.87

  Alignments for each domain:
  == domain 1  score: 195.7 bits;  conditional E-value: 2.7e-61
                 EEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCC CS
        p450  36 ifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgklsleelveeeaedlveklrkkag 134
                 +fr+ l + + v+ ++pe v +vl+ k  +f   ++ +  +++ +pf g g+++++g +wk  R +l p+++++    +   +  +a+ lv+ l+k +g
  KKY16879.1 551 TFRINLAGAREVNTCDPENVDAVLNSKFGDF---TYGKIRKNAFRPFFGSGIFTQDGVEWKHSRGLLKPQFMHN-RTGYFGHIGVQAKGLVTLLDKMVG 645
                 58999999999***************95444...333444444458**************************99.669********************* PP

                 HCS..EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH.HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        p450 135 ess..elditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfp.llkylptkllrklkeavkklkdlldklieerret 230
                   +   +d+ +++ +++ld+ +s lFg++++ ++d+++    ++v++l   + ++ v + + f  +   +p+    +l+ea+k+ ++++d ++   r+ 
  KKY16879.1 646 HDEvlDVDLEPIFYRYTLDTTTSMLFGKPLSAYDDQEN--VAAFVNAL--TVGQDKVSMGFRFGiFWALIPKA---DLREATKVCHGFVDGIVAGARKH 737
                 ***9999************************9999966..99999999..67788889999999344444444...44446677788888777766665 PP

                 HCHC.......SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHC.CT- CS
        p450 231 ldsa.......kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddl.qkl 321
                   ++        +++ ++ld ll            +d  ++ ++l++l+aG dTt+s l+w++ +La + e+ ++l+eEi++  + ++  ++d   ++ 
  KKY16879.1 738 SVKSpgeekvnANHQENLLDSLLHLY-------PSDDVAIRSQMLNILLAGRDTTASLLTWCFRLLALHREILDRLYEEIETLPPLSDLDRQDLHgSRT 829
                 55555779999778999999999996.......57899********************************************99887644444333689 PP

                 HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.........EEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS.CTESSCTT--TTEEGG CS
        p450 322 pyldavikEtLRlhpvvplllpRevtkdvvirg.........ylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg.nskrksfaflPFGaGp 409
                 pyl av+kEtLRl+p+vp + +R + + + ++           li+ G++v   +y +hr +e++ ++++ F+peR+l+ +g  +k++s  f+PF  Gp
  KKY16879.1 830 PYLHAVLKETLRLYPPVP-GNQRTAIHTTILPKgggsdgqspILIRPGDRVGWLPYVMHRKKEFWgDDADIFRPERWLEHNGeLEKQNSLVFIPFNSGP 927
                 ******************.********999975567778999****************************************9677************* PP

                 GS-TTHHHHHHHHHHHHHHHHHH CS
        p450 410 RnCiGerlArmelklflatlLqn 432
                 R+C+G+ +A +e    l+ +L+ 
  KKY16879.1 928 RMCLGKDMALLEAAAGLVYILKS 950
                 *****************999986 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6  32.1   1.1e-26   5.1e-23       9     352 ..      77     476 ..      69     477 .. 0.80

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 1.1e-26
       MFS_1   9 alarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpa 105
                 ++  s+++++ ++ a + ++ ++ps    l+ ++++g++v++l++G+ +d +Grrr + ++ll+ +++++++  as+ w +l ++ +l+++gag+ + +
  KKY16879.1  77 YAVDSLILLVQSIiATQAAYEFNPSYTKGLTIAVYVGMLVGALFWGFSADMIGRRRAFNVSLLICSIFAIVAG-ASPNWvVLGLFVCLSAFGAGGNLIM 174
                 3333334444444455666778899888899999**********************************66666.4888868888888999999999999 PP

       MFS_1 106 gaaliadwfpkeergraigllsagfslGailgpllggllasslg..............Wravfyilaivsllafvlfllllpeepperkrkspkeee.. 188
                   a++ ++ p  +    + ++++ +++G i++  ++  ++ + +              Wr+v+y  +++ +++ +l + +++ +++++    + ++   
  KKY16879.1 175 DTAVFLEYLPS-KSQWLLTFMASWWGIGQIIAGFIAWGFLPNNScssvdtctydnnkgWRYVWYTSGALVFVMSILRVTVIRLRETPKYLLGHNRDVev 272
                 99999999999.9999999**********99999888888888899*****************************988999999999999999999899 PP

       MFS_1 189 ..................................kgtgpaplvp...awkallkdpvlw....illialllfffgfsglltllplylqevlgls..... 241
                                                   k++  +   +   ++k l+  + +     ++++++ l+++++ ++ ++lp+y  e++g       
  KKY16879.1 273 vetlqwlatkynrqysltveqleacgsltsttrgKKVSYS---EfliHLKGLFLTKTIGvstaLIWFSWTLIGLAYPLFNVFLPTY-LETRGAQfgets 367
                 9999999999999999999999999998777444333333...3444677777777663455679999999999************.888888888999 PP

       MFS_1 242 ..glllaglllallalvgailallagrlsdr..lgrrrrlllallllllaalglallavtssavllllvlvl.iGfglgfvfpsllalasdlappeeag 335
                    ++ +++l  l++++g    +lag+l     lgr    ++a+++l+++ ++++++ v   + +  +++ + i+f l +++++l a++ +++p  ++ 
  KKY16879.1 368 qfIYWRNYALANLCSIFG---PMLAGWLCEIrwLGR--KGTMAFGALVTMIFFFCYTQVR--NNAQNVGFTCaISFWLNVYYGTLYAYTPEVLPSAHRT 459
                 998899999999999999...77******7634565..4444444444444444444444..3344444444488899999****************** PP

       MFS_1 336 tasglfntagslggalg 352
                 t +g++  ++ ++g+l+
  KKY16879.1 460 TGNGIAVACNRIMGILS 476
                 **************997 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4  26.3   1.6e-20     7e-17      46     422 ..     101     495 ..      58     499 .. 0.76

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 1.6e-20
                 .HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHH CS
    Sugar_tr  46 vlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyq 144
                 +++  ++ +++vG ++G+lf g+ +d++GR+ ++ ++ ++++i a++ +a++   ++ vl +   l+ +g+G+  ++ +    E+ p k    l ++  
  KKY16879.1 101 SYTKGLTIAVYVGMLVGALFWGFSADMIGRRRAFNVSLLICSIFAIVAGASP---NWVVLGLFVCLSAFGAGGNLIMDTAVFLEYLPSK-SQWLLTFMA 195
                 34456777889*****************************************...99999999**********************9976.678899999 PP

                 HHHHHHHHHHHHHHHHHHTSS-...........TTHHHHHHHCCHHHHHHHHHHGGG...S---HHHHHHTT-HHHHHHHHHHHHHC.......HHHHH CS
    Sugar_tr 145 laitfGilvaaifglglnktsn...........adgwrillglqlvpallllilllf...lPESPrylvekgkeeeakevlaklrge.......edadr 222
                 +++ +G+++a ++ +g+  +++           ++gwr+  + + ++  +++il+++   l+E+P yl+ ++++ e  e+l++l ++       + ++ 
  KKY16879.1 196 SWWGIGQIIAGFIAWGFLPNNScssvdtctydnNKGWRYVWYTSGALVFVMSILRVTvirLRETPKYLLGHNRDVEVVETLQWLATKynrqyslTVEQL 294
                 9****************55555578********9*****9999888888888887553337**********************7777666653333333 PP

                 HHHHHHHHHHHHHH.....HTTHHHHSH....HHHHHH...HHHHHHHHTTHHH..HHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHH....... CS
    Sugar_tr 223 elaeekdsleaeqeeekaswkellsskt.vrqrlligv...vlqifqqltGina..imyysptifenlglsksllvtiivgvvnfvatfvai....... 308
                 e+    +s+ ++   +k+s++e+l   +  +   +igv   ++++   l G ++  +  + pt +e+ g +   +  +i+    ++a +++i       
  KKY16879.1 295 EACGSLTSTTRG---KKVSYSEFLIHLKgLFLTKTIGVstaLIWFSWTLIGLAYplFNVFLPTYLETRGAQFGETSQFIYWRNYALANLCSIfgpmlag 390
                 344444444444...456666655554443333334431114555566677665337789999999999998855666666666677777764544444 PP

                 HH..HHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 309 fl..vdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisll 405
                 +l  ++ +GR+ ++ +Ga++ +i+f+ ++    + ++   a +++++ +i +++ ++     ++++ + +E+ p++ R+++  iava+n ++ +l +++
  KKY16879.1 391 WLceIRWLGRKGTMAFGALVTMIFFFCYT---QVRNN---AQNVGFTCAISFWLNVYY----GTLYAYTPEVLPSAHRTTGNGIAVACNRIMGILSAVI 479
                 33337889************999999996...33333...45899999999**99999....7889999****************************99 PP

                 HHHHHCHHHT-HHHHHH CS
    Sugar_tr 406 fpiiteaigggyvflvf 422
                  ++++ +    ++++  
  KKY16879.1 480 ATVADTSTP-VPIYICA 495
                 999998888.7777655 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   3.3      0.35   1.6e+03       9      46 ..     107     148 ..     102     172 .. 0.61
   2 ?    7.1   0.1   0.00084       3.8       6      99 ..     196     304 ..     191     313 .. 0.79
   3 ?    5.5   0.5    0.0026        12       9      64 ..     405     460 ..     396     483 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.35
     DUF4131   9 llalllllllllllllrr....rprrrvllllllllllallg 46 
                 ++a+ + +l+ +l++  +     +rr + ++ll++ ++a + 
  KKY16879.1 107 TIAVYVGMLVGALFWGFSadmiGRRRAFNVSLLICSIFAIVA 148
                 566666666666666666778744444444444444444332 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00084
     DUF4131   6 alvllalllllllllllllrr............rprrrvllllllllllallgfalrapqpnandlsqllesgqeviveGvvaslpeltgsgtrfvlev 92 
                 +++ ++ +++ +++ ++l ++            ++ +r+ +  + +l+++++ + +++ +  +++++ l + +++v+v+ +++     t++++++ l+v
  KKY16879.1 196 SWWGIGQIIAGFIAWGFLPNNscssvdtctydnNKGWRYVWYTSGALVFVMSILRVTVIRLRETPKYLLGH-NRDVEVVETLQW--LATKYNRQYSLTV 291
                 6889999999999999998889***********88888888888888889999999999999999999988.99**97777744..4556678999999 PP

     DUF4131  93 erv......lsag 99 
                 e++       s+ 
  KKY16879.1 292 EQLeacgslTSTT 304
                 9997555443333 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0026
     DUF4131   9 llalllllllllllllrrrprrrvllllllllllallgfalrapqpnandlsqlle 64 
                 ++++l+ ++++ ++ + r++ + v +++++ ++l +++ +l+a++p++ + ++ ++
  KKY16879.1 405 AFGALVTMIFFFCYTQVRNNAQNVGFTCAISFWLNVYYGTLYAYTPEVLPSAHRTT 460
                 5678888888888888889****************************999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (993 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 6472.32
//
Query:       KKY16980.1  [L=376]
Description: putative glycosyl hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-37  128.1  16.8    6.5e-37  127.9  16.8    1.0  1  Glyco_hydro_76  Glycosyl hydrolase family 76


Domain annotation for each model (and alignments):
>> Glyco_hydro_76  Glycosyl hydrolase family 76
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.9  16.8   3.6e-41   6.5e-37      11     355 ..      41     370 ..      31     376 .] 0.82

  Alignments for each domain:
  == domain 1  score: 127.9 bits;  conditional E-value: 3.6e-41
                     HHHHHHCETTECC.TCTCBSCES-GHHHHHHHHHHHHHHH.HHCTTCCCHHHHHHHHHCCCTCEE-SSSTTCTCSSEHHHHHHHHHHHHHHHHH. CS
  Glyco_hydro_76  11 kgllkyYkgnesg.gtpgnlpdpyywWeagalfgalidyw.rltgdstyndlitqallaqagenydympanqsrtegnDDqafwglaamtaaern 103
                     k+  +y+  n++  gt+  +p+  ++W++ + ++   dy  ++t+++++++++  +l++  ++  +  ++ +s +++nDD ++ ++a ++a+e  
      KKY16980.1  41 KNGSSYWAVNNYLtGTSDYVPTRAVFWTQVETIEVTEDYAeYYTSNTSLTKTVIPSLISGLNNVVSGSSDFTSWNDYNDDIMWSVIALVRAYEL- 134
                     555689999987779999999999**************9735788**********999988877777777777788*****************9. PP

                     ....H--HHHHHHHHHHHHHHHHC.B-SCSCCS-BBSEC..ESS--SEEEHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHSCSBTTTS CS
  Glyco_hydro_76 104 fpeptdepswLalAqavfntqasr.wdeetcgGGlrWqiftwnsgydyknsisngplfqlaarLarytgnetYlewAekvwdWvedvgliddedw 197
                         +d+p++L++Aq+ f+  +sr +d++  +GGl+W++      +++kn++ ngp++ +a  La       Y  +A k++ W++++ l++d+++
      KKY16980.1 135 ----SDDPNFLRQAQQQFDNTYSRgFDDD-LNGGLWWNT-----DNETKNACVNGPAAIAAQLLANNILGGDYHSKAVKIFTWLRNT-LFNDTTG 218
                     ....9*******************88887.8******65.....999**********999999999999*****************6.679**** PP

                     -B-SEEETTTCCEEEE---HHHHHHHHHHHHHHHHHHH--H..HHHHHHHHHHHHHHHHCEEC...TTEEEEEE-TTSTTCCTTHHHHHHHHHHH CS
  Glyco_hydro_76 198 lvyDgasvednctdinklqwtYnqGtylsgaaylynaTgde..kWldrvkgllnatlstffpd...gnilyevacepsekcnnDqrsFkgilarw 287
                      +yD+++ ++   ++ +  +tYnqGt++++a++l + Tgd+  ++l ++  + n t   + ++   + il+  ++ p+   +++   Fkgi++rw
      KKY16980.1 219 AIYDHIEANG---TLATFSFTYNQGTFIGAATLLSQ-TGDTsfNYLSDASLAFNFTSTSLSSTidgNAILSPETTDPN---EGNAPGFKGIFTRW 306
                     *****85544...4799***********88877755.6565579******9999996666666774666665444444...5999********** PP

                     HHHHH..SH.HHHHHHHHHHHHHHHHHHTTTB...TTTSB-TTTTTSSCCHHHH.HHHHCCHHH...... CS
  Glyco_hydro_76 288 laltaqlap.etadtiepllrasaeaaakscsggsdgttcglkwlkgtwdgdag.lgeqmsaleviqall 355
                      +    +++ +  ++++ +l ++a+++++  ++  +g t  ++w+++t d+ +g + +++ a ++++a +
      KKY16980.1 307 ASR---YIEvSGDKSAKAFLVQNANQVWNIKDK--QGITW-TNWTEQTPDSVKGtVLNSWGASSAVSAVV 370
                     666...5552455556777*********55554..56555.79**9999999875666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2473.95
//
Query:       KKY16981.1  [L=450]
Description: putative major royal jelly protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-19   70.1   0.0    2.8e-19   69.6   0.0    1.3  1  MRJP          Major royal jelly protein
     0.0012   19.0   0.1        0.2   11.9   0.0    2.7  2  Arylesterase  Arylesterase


Domain annotation for each model (and alignments):
>> MRJP  Major royal jelly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   3.1e-23   2.8e-19      12     237 ..     155     399 ..     139     439 .. 0.81

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 3.1e-23
        MRJP  12 drLWvLDsGivnt.......lqqlk.icppkllvfdlatdkllkrvelpadvakknsllvslvVdladd...tcddtfvYiaDakgk...gliVYdlad 96 
                 + LW+LD+G   +       + ++     pk++ ++l ++ +  ++++p dv   +s++++++ dl+++   t   +++Yi D+ ++   g i+ dl +
  KKY16981.1 155 ETLWLLDTGRPTIkssdgtyTMPYAqPGGPKVVGVSLSNNSVYATYTFPSDVHYPDSYMNDIRFDLRSNvtgTSGGGIAYIVDSSNEgrpGFIMLDLGT 253
                 679******654311111114445557889*************************************999987778*******99988889******** PP

        MRJP  97 dkswRvesn......tfkpdPkfgkltiagesfqlkdG..ifglalspvtndgrtLYFhplaSeklysVptevLrnes..laennvsyeefkdlgkrgs 185
                 + swR  ++        +  P ++ +  + + ++ + G    gl+  ++++dg+ +Y++pl S++ y+Vpt  Lr  +  l ++++  +++  lg rg 
  KKY16981.1 254 GASWRRLTQhpsvlrVYNDVPSYQGHPSYYRDVNIPVGhqQEGLDGIQISPDGQYVYYSPLTSNSIYRVPTLNLRARDsdLLAEQAASNNVSWLGGRGG 352
                 ****965443676645667799999999999999888877667777777779999*******************86551156677999*********** PP

        MRJP 186 qstakavdkngvlffglvnesaivcwneskpysrenlktvarneetlqfvsd 237
                 ++ +   d ng ++    +++ai+ ++++  ++    + + r+++ ++++++
  KKY16981.1 353 NANGFEGDSNGLIYQLMPEHNAIYYYDPKD-LQ---THGFVRDPR-ILWPDS 399
                 **************************9988.33...233445554.555555 PP

>> Arylesterase  Arylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   2.2e-05       0.2      57      81 ..     298     322 ..     273     324 .. 0.84
   2 !    4.0   0.0    0.0062        56      27      48 ..     364     385 ..     361     388 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.2e-05
  Arylesterase  57 nGInidadkkyiyvadilresihvm 81 
                    GI+i++d +y+y + ++ +si+++
    KKY16981.1 298 DGIQISPDGQYVYYSPLTSNSIYRV 322
                   7**********************85 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0062
  Arylesterase  27 lemslqlawtavvYyspsevkv 48 
                   l+ +l +   a++Yy+p+++++
    KKY16981.1 364 LIYQLMPEHNAIYYYDPKDLQT 385
                   67889999**********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2905.82
//
Query:       KKY16982.1  [L=237]
Description: putative glutathione s [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-16   60.7   0.1    2.4e-16   59.7   0.0    1.5  2  GST_C_3   Glutathione S-transferase, C-terminal domain
    2.3e-07   30.9   0.0    4.2e-07   30.1   0.0    1.4  1  GST_C     Glutathione S-transferase, C-terminal domain
    0.00017   21.6   0.0    0.00051   20.0   0.0    1.8  2  GST_C_2   Glutathione S-transferase, C-terminal domain
     0.0079   16.5   0.0      0.017   15.4   0.0    1.6  1  GST_N     Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
      0.013   15.8   0.0      0.029   14.7   0.0    1.6  1  GST_N_2   Glutathione S-transferase, N-terminal domain
      0.045   14.2   0.0      0.093   13.2   0.0    1.5  1  GST_N_3   Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.8   1.1e+04      32      42 ..      95     105 ..      91     112 .. 0.75
   2 !   59.7   0.0     8e-20   2.4e-16       2      98 ..     127     232 ..     126     233 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.8
                 HHHHHHHHHHC CS
     GST_C_3  32 flkyfekvlkk 42 
                 +l++f++vl +
  KKY16982.1  95 ILRHFSRVLGN 105
                 68899999983 PP

  == domain 2  score: 59.7 bits;  conditional E-value: 8e-20
                 HHHHHHHCCCCSHCHHHHHHHHHHHHHHHCHHHHHHHHHH...C.HGTSSSSTTS--HHHHHHHHHHHHHHHH......TCC.CC-HHHHHHHHHHHTS CS
     GST_C_3   2 Dlhhpiakllydqkeeaekkkefleerlpkflkyfekvlk...k.kgggylvgdklTyADlalfqvldgleea......eal.kkfpklkalyervear 89 
                 D+++ ++ +++  ++++e   e  ++   ++l+++e++l+   + kgg y++g+k+TyAD++lfq+l+  e        + + k++ +l++l e+v +r
  KKY16982.1 127 DWRTRFVDAFV-SPNKDETYPEHCKTARVNYLRALERHLSenqTaKGGSYVIGKKFTYADIVLFQILHDEELYrkegasQ-ElKPYSRLAQLAEAVINR 223
                 99999999998.444447888889999999**********996435666******************9998889998744.36**************** PP

                 HHHHHHHCT CS
     GST_C_3  90 pkikaYles 98 
                 p+ika+++s
  KKY16982.1 224 PNIKAFFNS 232
                 ******987 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   1.4e-10   4.2e-07      15      93 .]     138     224 ..     115     231 .. 0.86

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 1.4e-10
                 TTHHHHHHHHHHHHHHHHHHHHHHHHHHH......TSSSSSTTSSCHHHHHHHHHHH..HHHHHTTTTT.TTTSHHHHHHHHHHHTSH CS
       GST_C  15 kaeekkeelvdealekvaevlsaleeelk......kqdylvGdkltlADialvpiln..wlqrlglafg.qekfpnlkawlerimarp 93 
                 ++ +k+e++ + ++++  ++l ale +l+      +  y++G k+t+ADi+l+ il    l+r ++a    + +  l +  e +++rp
  KKY16982.1 138 SP-NKDETYPEHCKTARVNYLRALERHLSenqtakGGSYVIGKKFTYADIVLFQILHdeELYRKEGASQeLKPYSRLAQLAEAVINRP 224
                 22.79*************************99999999******************98888888888877788888888888888877 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.8   5.4e+03      15      27 ..      26      41 ..      23      53 .. 0.67
   2 !   20.0   0.0   1.7e-07   0.00051      12      45 ..     154     193 ..     128     203 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.8
                HHHCTTT---SS.... CS
     GST_C_2 15 ldaleahLadsp...f 27
                ld+l++ +++ +   f
  KKY16982.1 26 LDFLSRGRGQAVrllF 41
                7888888888887433 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 1.7e-07
                 CHCHHHCTTT---SS.......CTTCS--HHHHHHHHHHH CS
     GST_C_2  12 daaldaleahLadsp......flfGdqptlaDialapflv 45 
                 ++ l ale+hL   +      ++ G ++t+aDi+l+  l+
  KKY16982.1 154 VNYLRALERHLSENQtakggsYVIGKKFTYADIVLFQILH 193
                 7899********777777788**************98776 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.8e-06     0.017       2      73 ..      22      98 ..      21     101 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.8e-06
                EEEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGC.HHHHH....HCTTS-SSEEEETTEEEESHHHHHHH CS
       GST_N  2 vltlysirgsprahrirlllaakgveyevvpldfeageeks.pellk....lnplgkvPaLedngkkltESraIleY 73
                v++++++++  r  ++rll   +g+ +  v++ +++  + + + +l     lnp g+vP L+ ngk+ t+S  Il++
  KKY16982.1 22 VIHYLDFLSRGRGQAVRLLFIDSGIAFTDVRYSSDEISTVKdESFLPppngLNPTGNVPILQLNGKTYTQSYPILRH 98
                5788888888899999999999999999999999998887778888533337888********************98 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   9.6e-06     0.029      19      68 ..      56     100 ..      37     102 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.6e-06
                 EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHHH CS
     GST_N_2  19 diisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlryle 68 
                 d+is v    k+++  +    lnp+g VP+L++ +g+ ++ S  Ilr + 
  KKY16982.1  56 DEISTV----KDESFLPPPNGLNPTGNVPILQL-NGKTYTQSYPILRHFS 100
                 455555....55555566789***********8.9************986 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.1e-05     0.093      39      67 ..      71      99 ..      34     106 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.1e-05
                HHH-TT--SSEEETTS-EEESHHHHHHHH CS
     GST_N_3 39 laknplgkvPvLeddgealtdSlaIidyL 67
                   np+g vP+L+ +g+ +t S  I++++
  KKY16982.1 71 NGLNPTGNVPILQLNGKTYTQSYPILRHF 99
                4468*********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1569.48
//
Query:       KKY16983.1  [L=789]
Description: putative small s protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-08   35.6   0.1    6.6e-08   33.1   0.0    2.2  2  AAA_16           AAA ATPase domain
      2e-06   27.8   0.0    4.9e-06   26.6   0.0    1.7  1  NACHT            NACHT domain
     0.0011   19.3   0.0     0.0043   17.3   0.0    2.1  2  AAA_22           AAA domain
     0.0084   16.7   0.0      0.041   14.4   0.0    2.2  2  AAA_18           AAA domain
  ------ inclusion threshold ------
      0.011   16.3   0.0      0.032   14.7   0.0    1.8  1  ABC_tran         ABC transporter
      0.018   15.4   0.1      0.082   13.3   0.0    2.1  2  RNA_helicase     RNA helicase
      0.019   14.1   0.0      0.036   13.2   0.0    1.4  1  NB-ARC           NB-ARC domain
       0.03   14.2   0.0        0.1   12.5   0.0    1.8  2  ATPase_2         ATPase domain predominantly from Archaea
      0.049   13.4   0.0      0.099   12.4   0.0    1.4  1  AAA_29           P-loop containing region of AAA domain
       0.13   12.0   0.0       0.24   11.1   0.0    1.4  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.16   11.7   0.0        0.3   10.8   0.0    1.4  1  ATP_bind_1       Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0     4e-11   6.6e-08      25     162 ..      84     232 ..      71     240 .. 0.76
   2 ?   -1.7   0.1       2.1   3.4e+03      54      99 ..     355     397 ..     339     426 .. 0.70

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 4e-11
      AAA_16  25 elvllsGesGvGKsslvrellralekd...............ggif.lrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala 106
                 ++  +sG +G+GKs+l+r l+++  ++               g++f ++g  +q   +   ++ l++ l  ++ll q+ d  +++ ++ w+  l+ +++
  KKY16983.1  84 SIYWISGKAGSGKSTLMRYLYEHKLTShhlsawarevplikaGFFFwTSGSEEQR--S---QVgLLRSL-LHQLLSQEPDLISNTFPSLWQGLLTMSTK 176
                 7889*****************9666666888888888888644333455555555..2...33377777.44888888888999999999999999998 PP

      AAA_16 107 avpelagaea.srllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrll 162
                 +  +l+   +   l + + rl++ + ++ + + l++D l+ +d + l++++++ + +
  KKY16983.1 177 DRIKLSLTWSiPELMAGFHRLIDVTLPNTK-ICLFIDGLDEFDGDHLAIIEFFKSMS 232
                 655555555599999999****55555366.******************99987765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.1
      AAA_16  54 iflrgkcdqlesaipysalaqalareellrqlldeaesaeleawre 99 
                 +f r+ + qle+    s + q + ++e+++++  +++++++  w  
  KKY16983.1 355 LFQRQSANQLEET---SRIFQSIRAREVVAAIVKDETANSPTIWEL 397
                 4555555555333...557888888888888888877766666654 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0     3e-09   4.9e-06       3      98 ..      86     222 ..      84     283 .. 0.68

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 3e-09
                 EEEEC-TTTCHHHHHHHHH.........HHHCTS-SCCCC-SEEEEEETTTTTTS-.....-HCHHHCCCCTS--SSS-C................... CS
       NACHT   3 vilqGeaGsGKTtLlqkla.........lawaegklpqgafklvFflslrelsrsgna..rsladllfsqlpepaapvse................... 71 
                  ++ G+aGsGK+tL++ l          +awa++ +  +   ++F+ s +e +rs+    rsl  +l sq p+++++  +                   
  KKY16983.1  86 YWISGKAGSGKSTLMRYLYehkltshhlSAWAREVPLIK-AGFFFWTSGSEEQRSQVGllRSLLHQLLSQEPDLISNTFPslwqglltmstkdriklsl 183
                 69*************998631111222145555554444.47778888777777765566777777777777777777669888888888888887776 PP

                 ..CHHHHCCSCCCEE..........EEEE-STT-SS-TC CS
       NACHT  72 ..vwavllelperlL..........lilDglDelvtdlg 98 
                    + +l++ ++rl           l +DglDe+  d  
  KKY16983.1 184 twSIPELMAGFHRLIdvtlpntkicLFIDGLDEFDGDHL 222
                 6544455555555559999999999********998654 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.6e-06    0.0043       6     130 ..      84     247 ..      81     253 .. 0.73
   2 ?   -3.4   0.0       6.8   1.1e+04      73      95 ..     361     383 ..     330     391 .. 0.45

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.6e-06
      AAA_22   6 gilvvtGesGtGKTtllrrlleqld.eeakaee..erpevv.....fvtlpsst..sskdllrellralglelka........................ 70 
                 +i  + G +G+GK+tl+r l e +   +       ++++++     f t  s++  s+  llr ll++l ++  +                        
  KKY16983.1  84 SIYWISGKAGSGKSTLMRYLYEHKLtSHHLS-AwaREVPLIkagffFWTSGSEEqrSQVGLLRSLLHQLLSQEPDlisntfpslwqglltmstkdrikl 181
                 677899************9877654044444.36*6666666664255555555889999999999999998888999999999999998887777777 PP

      AAA_22  71 .erlsseellealeqalrarav..ielliiDEaqhlr..seealeeLrsllnl.srkgvqliLvGt 130
                   + s  el++ +++ ++ +    + +l iD  + ++  + +++e+++s+++  + k++++ L   
  KKY16983.1 182 sLTWSIPELMAGFHRLIDVTLPntKICLFIDGLDEFDgdHLAIIEFFKSMSEGpNGKHIKMCLSSR 247
                 755555555555555555555577789999999999876699999999998877788888877655 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.8
      AAA_22  73 lsseellealeqalraraviell 95 
                 +++ e  +++ q +rar v++++
  KKY16983.1 361 ANQLEETSRIFQSIRAREVVAAI 383
                 22222234444444444444555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.5e-05     0.041       2      28 ..      87     113 ..      87     154 .. 0.79
   2 ?   -3.2   0.0       7.1   1.2e+04      71     106 ..     364     408 ..     334     409 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.5e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgf.gvnl 28 
                 +++G++G+GK+tl ++L ++ ++ + +l
  KKY16983.1  87 WISGKAGSGKSTLMRYLYEH-KLtSHHL 113
                 589**************998.3444444 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 7.1
      AAA_18  71 leegknlvidghlaeleseaakdikk..........vvLtaspeel 106
                 lee +  ++++++a  + +a ++  +          + L+a++++l
  KKY16983.1 364 LEETSR-IFQSIRAREVVAAIVKDETansptiwelaFALDARDDVL 408
                 222222.555555555555555544455555555567777777666 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0     2e-05     0.032      11      34 ..      83     106 ..      79     120 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2e-05
                 TSEEEEEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  11 gekvaivGenGaGKStLlkllagl 34 
                 g+++ i G+ G+GKStL++ l+++
  KKY16983.1  83 GSIYWISGKAGSGKSTLMRYLYEH 106
                 8999****************9976 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     5e-05     0.082       2      24 ..      87     109 ..      86     136 .. 0.81
   2 ?   -2.1   0.0       3.1   5.1e+03      27      63 ..     736     772 ..     722     782 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5e-05
  RNA_helicase   2 wlyGpsgeGKStlakeLakallk 24 
                   w++G++g GKStl+++L ++ l+
    KKY16983.1  87 WISGKAGSGKSTLMRYLYEHKLT 109
                   9***************9876553 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.1
  RNA_helicase  27 klkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkd 63 
                   k+++++++ + ++ d  w+ Y + ev  + D++++  
    KKY16983.1 736 KDNWDSEISAVGVIDMLWEEYGDVEVGKVRDLMRRLL 772
                   5566777777888899999999999999999988764 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.2e-05     0.036       9      50 ..      74     112 ..      69     155 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.2e-05
                 HHHHHCTTTSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCCC CS
      NB-ARC   9 iekLlekdelqslvvalvGmgGvGKttlakqilnksdevegr 50 
                  e+L  + +l+  +  ++G++G+GK+tl++  +++ + + ++
  KKY16983.1  74 TEWLE-SPDLG-SIYWISGKAGSGKSTLMRYLYEH-KLTSHH 112
                 56666.89999.7889**************99999.555554 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.2e-05       0.1      13      48 ..      75     111 ..      71     123 .. 0.81
   2 ?   -2.6   0.0       2.6   4.2e+03      90     127 ..     351     388 ..     320     393 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.2e-05
    ATPase_2  13 eiler.epneiyfiYGpegsGKtaLlkeiienledkd 48 
                 e+le+ +  +iy i G  gsGK++L++ ++e ++ ++
  KKY16983.1  75 EWLESpDLGSIYWISGKAGSGKSTLMRYLYEHKLTSH 111
                 5666524568********************9997765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.6
    ATPase_2  90 eleeilkeksklvfkaielllekikkkgkkiiiiiDel 127
                   e +++++s++  +  ++++++i+ +    +i+ De 
  KKY16983.1 351 FEELLFQRQSANQLEETSRIFQSIRAREVVAAIVKDET 388
                 23334447777778888888888888888888888886 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.1e-05     0.099      23      39 ..      84     100 ..      72     102 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.1e-05
      AAA_29  23 gatlltGpsGsGKSTll 39 
                 +++ ++G+ GsGKSTl+
  KKY16983.1  84 SIYWISGKAGSGKSTLM 100
                 4788***********97 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00015      0.24       3      47 ..      88     141 ..      86     158 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00015
  Viral_helicase1   3 vhGvpGcGKStlirkllrts...liltvnrptaelltegk......pklpnlsv 47 
                      ++G +G+GKStl r l++++   ++l++  + + l+++g+      +++++++v
       KKY16983.1  88 ISGKAGSGKSTLMRYLYEHKltsHHLSAWAREVPLIKAGFffwtsgSEEQRSQV 141
                      7899*************9966665555555556666666655555555555555 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00019       0.3       1      21 [.      88     108 ..      88     114 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00019
  ATP_bind_1   1 vvGpaGsGKttfvgalseile 21 
                 + G aGsGK+t+++ l+e+  
  KKY16983.1  88 ISGKAGSGKSTLMRYLYEHKL 108
                 57****************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 5469.66
//
Query:       KKY16984.1  [L=763]
Description: hypothetical protein UCRPC4_g05708 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (763 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 4969.65
//
Query:       KKY16985.1  [L=1044]
Description: putative alpha-ketoglutarate dehydrogenase complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-64  217.5   0.0    1.9e-64  216.6   0.0    1.5  1  Transket_pyr     Transketolase, pyrimidine binding domain
    1.6e-58  198.1   0.0    2.5e-58  197.4   0.0    1.2  1  E1_dh            Dehydrogenase E1 component
      2e-57  193.2   0.2    6.2e-57  191.6   0.0    1.9  2  OxoGdeHyase_C    2-oxoglutarate dehydrogenase C-terminal
    3.9e-17   61.5   0.5    8.7e-17   60.4   0.5    1.6  1  2-oxogl_dehyd_N  2-oxoglutarate dehydrogenase N-terminus


Domain annotation for each model (and alignments):
>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.6   0.0   4.2e-68   1.9e-64       2     178 .]     665     877 ..     664     877 .. 0.99

  Alignments for each domain:
  == domain 1  score: 216.6 bits;  conditional E-value: 4.2e-68
                   EEEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGT................TEGEEE--S-HHHHHHHHHHHHHHCT.TEEEEEEEE CS
  Transket_pyr   2 kiawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqg................egrvidsgisEqavlgfavGaalagp.llviveaqF 81 
                    i+w++aea+a+++l+ e+++v+++g+Dv++gtfs+r+++lhdq+                 +++ +s++sE++vlgf++G++l++p +lv++eaqF
    KKY16985.1 665 NIDWATAEALAFGTLCLEGHHVRVSGQDVERGTFSQRHAVLHDQEtegtytplqhlskdqaTFTISNSSLSEFGVLGFEYGYSLSSPnALVMWEAQF 761
                   69*********************************************************************************************** PP

                   HHHHGGGHHGGHHHHHCHHHHHT--EEEEESBSGGGSTTGTTTSBSSHHHHHHTSTT...................EEEE--SSHHHHHHHHHHHHH CS
  Transket_pyr  82 gdFangAqiyadqairsgeakgklkvgvvtrlpigvgedGpehqsaeleaflrlipg...................lkvvrPsdpaetkhllrrair 159
                   gdFan+Aq+++dq+i sge k+ +++g+v+ lp+g++++Gpeh+s ++e++l+l+++                   ++v++ ++pa+++h+lrr+++
    KKY16985.1 762 GDFANNAQCIVDQFIASGEVKWLQRTGLVMSLPHGYDGQGPEHSSGRMERYLQLCNEdprifpspdkldrqhqdcnMQVAYMTEPANLFHILRRQMN 858
                   ************************************************************************************************* PP

                   SSS.SEEEEEE-SSEEC.T CS
  Transket_pyr 160 redrkPvvlrlpksllrhk 178
                   r++rkP++++++ksllrh+
    KKY16985.1 859 RQFRKPLIIFFSKSLLRHP 877
                   *****************85 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.4   0.0   5.6e-62   2.5e-58       6     295 ..     276     592 ..     271     596 .. 0.91

  Alignments for each domain:
  == domain 1  score: 197.4 bits;  conditional E-value: 5.6e-62
                 HHHHHHHHHHHHHTTSS-S-----TT-HHHHHHHHHTS-TT..SEEEES.S--HHHHHHTT--..HHHHHHHHTT-T....TTSSGTT-..-E..BT.. CS
       E1_dh   6 lrrvedaldalykrkkrigfyhlsagqealkvgiaaaleke..Dliite.YReagvllargls..leeilaeltgkv....kgkggsrh.elmyaek.. 92 
                 +  +e +l+ +y + kr+g++ ++ + + +k +i+ +++ +  D++i + +R++ ++l ++++   e+i++e++g +    +g+g++++  +m  e+  
  KKY16985.1 276 SSSFETFLATKYPNDKRFGLEGCETLVPGMKAMIDRSVDYGvkDIVIGMpHRGRLNVLSNVVRkpNESIFSEFAGSAepsdEGSGDVKYhLGMNFERpt 374
                 56789999*******************************9888****999************98899**********9***999999998777655412 PP

                 ....T..BEEE-SSTTTH..HHHHHHHHHHHH......HHTS---EEEEEEGGG.TT-HHHHHHHHHHHHTT--E...EEEEEEESEETTEEHHHH-S- CS
       E1_dh  93 ....esrilggngivgaq..vplvaGialaak......iegkkevailliGDgA.anqGdvyealnlaalwklpv...ifvveNNkygisTeaekasas 175
                      +++    ++++++   p+v G ++a +      ++ ++++ +ll+GD+A a+qG+vye++ + al+ + +   i++v+NN++g++T+++ a+++
  KKY16985.1 375 psgkRVQLSLVANPSHLEaeDPVVLGKTRAIQhynndeQDHDTAMGVLLHGDAAfAGQGIVYETMGFMALPAYSTggtIHIVVNNQIGFTTDPRFARST 473
                 22113344444444444433777778888888****99999*********************************99*********************** PP

                 --GGG..TTTTS-EEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHSSSHHHHHHHHHHHH-HHHHHHHHHHHTTSS-HHHHH CS
       E1_dh 176 keladrargvgipglrVdgnDplavyeAvkfAaeraregkgpllielvtYRyggHsesDdpstyrtreeveevrkkkdpiqrlkelLvkkgvvseeelk 274
                 ++ +d a++  +p+++V+g+D++av   ++ Aa+++ e+k++++i++v+YR +gH+e D p +++ + +++ + ++k ++ ++ ++L +  v +++  +
  KKY16985.1 474 PYCTDIAKAIDAPIFHVNGDDVEAVNFICQLAADWRAEFKKDVVIDIVCYRKQGHNETDQPFFTQ-PLMYKRISEQKMQLDKYVAQLLSDKVFTKDDID 571
                 *****************************************************************.********************************* PP

                 HHHHHHHHHHHHHHHHHHHS- CS
       E1_dh 275 eiekevrkeveeavkkaeskk 295
                 e +k v  + +e ++++++++
  KKY16985.1 572 EHKKWVWGMLNESFERSKDYQ 592
                 ******************985 PP

>> OxoGdeHyase_C  2-oxoglutarate dehydrogenase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.44     2e+03     115     140 ..      36      61 ..      25      67 .. 0.74
   2 !  191.6   0.0   1.4e-60   6.2e-57       1     151 [.     880    1033 ..     880    1034 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.44
  OxoGdeHyase_C 115 kkkkkklryvgreasaspAtGskkvh 140
                    ++ kk+  ++gr++ a  A+ sk+ +
     KKY16985.1  36 NSPKKNALVAGRKPLAVIAQASKRGY 61 
                    455678999*********99988765 PP

  == domain 2  score: 191.6 bits;  conditional E-value: 1.4e-60
  OxoGdeHyase_C    1 rSsleelaegtsFqrvledeeeea..lkepekvkrvvlcsGkvyydLlkerekkekekdvaivriEqlyPfpfeelkeelekYpnakelvWvQe 92  
                     rS++e+++e++sF+++++d+++++  +k pe+++rv+lc+G+vy  L+++r+++++ k+ ai+r+Eql Pfp+++lke+l++Ypnak++vW+Qe
     KKY16985.1  880 RSNIEDFTEDKSFKWIIPDPAHATgdIKPPEEIERVILCTGQVYATLHQHRASNDELKNAAITRVEQLNPFPWAQLKENLDSYPNAKTVVWCQE 973 
                     69*******************97799999***************************************************************** PP

  OxoGdeHyase_C   93 EpkNqGawsfveprletvlkek.kkkkkklryvgreasaspAtGskkvhkkeqealleea 151 
                     Ep N+Gaw fv+pr+etvl+e+ ++++++++y+gr++sas+AtG k+ hkke++++le+a
     KKY16985.1  974 EPLNAGAWGFVQPRIETVLNETeHHNRRHVMYAGRPPSASVATGLKSSHKKEENDFLEQA 1033
                     *********************7689999*****************************998 PP

>> 2-oxogl_dehyd_N  2-oxoglutarate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.5   1.9e-20   8.7e-17       6      40 ..      73     107 ..      72     108 .. 0.96

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 1.9e-20
  2-oxogl_dehyd_N   6 gtnaaYiEelYeayleDPsSVdesWrayFknledg 40 
                      g+ a+Yi+e+Y a+++DPsSV+ sW++yFkn+edg
       KKY16985.1  73 GNTANYIDEMYLAWKQDPSSVHLSWQTYFKNMEDG 107
                      788******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1044 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.53
# Mc/sec: 5884.84
//
Query:       KKY16986.1  [L=489]
Description: putative glycosyl hydrolase family 47 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.4e-165  550.0   0.0   4.9e-165  549.9   0.0    1.0  1  Glyco_hydro_47  Glycosyl hydrolase family 47


Domain annotation for each model (and alignments):
>> Glyco_hydro_47  Glycosyl hydrolase family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  549.9   0.0  2.7e-169  4.9e-165      16     458 .]       2     476 ..       1     476 [. 0.98

  Alignments for each domain:
  == domain 1  score: 549.9 bits;  conditional E-value: 2.7e-169
                     SSEEETTTTEEE-SS.SS-CCHHHHHHHHHHCCHHHHHHHHHHHHHHC----S.SS.EEEHHHHHHHHHHHHHHHHHHH.S-HHHHHHHHHHHHH CS
  Glyco_hydro_47  16 hDelrPlskkgrdtfgglgatlvDsLdtllimglkeefeeaveavekkidfdtsdskevsvFEttIRyLGGLlsaydlsekkedvllekAvelad 110
                     +Del P+s++ r+tfgg++atlvD+Ldtl imgl+e+f+ av+ +e ++df + d++e+++FEttIRyLGG+lsaydls  ++++ll+kAve+++
      KKY16986.1   2 EDELAPVSGGTRKTFGGWAATLVDTLDTLHIMGLQEDFDIAVSEIE-SLDFGKPDAEELNTFETTIRYLGGFLSAYDLS--DDPLLLDKAVEVGE 93 
                     7*********************************************.********************************..************** PP

                     HHHGGGSSTTS---SEEETTT--EE-..STCGCEEEHHHHCSSHHHHHHHHHHHT-CHHHHHHHCCHHHHHCHCC.HHHTTB-BSEEETTT--EE CS
  Glyco_hydro_47 111 rLlpAFdtpsglpvarvnlkkrkaskk.erassesvlAelgslslEftrLsqlTgdkkYedlaervtkaleelqektklpglvpikidastgkfv 204
                     +L+  Fdtp+++p++r+++++++++   ++as ++ +Ae+gsl++EftrLsqlT+++k++d+++r+ k + e+q+ t+lpg++p  +da+ ++ +
      KKY16986.1  94 MLYVTFDTPNRMPMTRWQWRQSTGGFGvQKASPNTLVAEIGSLTVEFTRLSQLTNNPKWFDAVQRISKIFYEQQNYTRLPGMFPVLVDAEYSDLT 188
                     *******************999888777888888899********************************************************99 PP

                     .STEE-SSTTTHHHHHHHHHHHHHCTS--HHHHHHHHHHHHHHHHH.TEEE-TTT..--EEE-EECTT..CTS.EE-EEEGGGGHHHHHHHHHHH CS
  Glyco_hydro_47 205 .aekislgargDSyYEYllKqylllggeeeqyrkmyeealdaikkhllfrpskkkeddllfvgevtst..eegklspeidhLscFlgGllalgak 296
                      ++ ++lg+++DS+YEY++K+y+llgg + +yr++y +++d++ ++ +frp+++ edd+l++g+v+++  e+ +l+ + +hL+cF+gG+lalg++
      KKY16986.1 189 eDSAFTLGGMADSLYEYFPKEYALLGGLDLMYRHLYVRSMDTAIRYAFFRPMVPTEDDILISGNVRAEdeEHPRLDSQGQHLACFAGGMLALGGR 283
                     899**************************************************************988877899********************* PP

                     TT-HHHHHHHHHHHHHHHHHHHHTSTTS---SEEEE-SS...........S-ECTSSSSEEE-..........................GGG--B CS
  Glyco_hydro_47 297 llekeedlelAkkltegcvkayeatktglmPEifevkpces......aeecewneekkdealk.........................riedrky 360
                     l++ ++++el++klt+gc++aye+ + g+mPE+f+++pc s       ++c+wne+ ++e+l                           i dr+y
      KKY16986.1 284 LFDLPSHVELGSKLTHGCIWAYENSPLGIMPESFHMAPCPSsspksaVTSCPWNETYYHEILMsrtghdttqtpssiisakrlppgftDIGDRRY 378
                     ***************************************9999999999*******99999999******************************* PP

                     ----HHHHHHHHHHHHH--THHHHHHHHHHHHHHHHCEETTEE--ECETTSSS-EE-S-B-HHHHHTHHHHHHHHC-S-TTT-TTTEEE-TTS-E CS
  Glyco_hydro_47 361 llRPEaiESlfylYritgdekyrevgwemfealekatktesgysaledVtkeepekeDemeSFwlaEtlKYlYLlFsdedvlsldeyVfnTeAHp 455
                     +lRPEaiES+f+lYritgd+ +re +w+mfe ++k+tkt +++++++dVt+++p+  D+meSFw aEtlKY+YL+Fsd++++sld+yV+nTeAHp
      KKY16986.1 379 ILRPEAIESIFILYRITGDPALRETAWKMFETIDKHTKTPFANAGIDDVTDDHPTLIDRMESFWTAETLKYFYLIFSDPNLISLDDYVLNTEAHP 473
                     *********************************************************************************************** PP

                     EE- CS
  Glyco_hydro_47 456 lkr 458
                     +kr
      KKY16986.1 474 FKR 476
                     *96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.53
# Mc/sec: 2773.12
//
Query:       KKY16987.1  [L=200]
Description: hypothetical protein UCRPC4_g05711 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00075   20.1   0.0      0.001   19.7   0.0    1.2  1  SnoaL_2   SnoaL-like domain
  ------ inclusion threshold ------
      0.051   13.9   0.0      0.071   13.4   0.0    1.3  1  DUF2358   Uncharacterized conserved protein (DUF2358)
       0.07   13.4   0.0      0.096   12.9   0.0    1.3  1  SURF1     SURF1 family


Domain annotation for each model (and alignments):
>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.7e-07     0.001      17      88 ..      59     130 ..      44     147 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.7e-07
                 HHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEETTEEEEEEEEEEEEETTSSEEEEEE CS
     SnoaL_2  17 aalfapdvvwedpggelrGreairaffralfaafpdlrfeihdvvadgdrvavewtvtgtipatgrgvtvrg 88 
                 ++l+ pd+ + dp+ + +G+++++a++ +l a+f++++   h v+  g+ + +    ++ ++  g++ tv+ 
  KKY16987.1  59 LSLWKPDAIFKDPLTTAEGHKQYAAQWYGLAAGFSEITRLSHTVTSAGNPITLDLKTKYVVKGIGAEKTVAS 130
                 589***********9***********************99********999888777666566666666633 PP

>> DUF2358  Uncharacterized conserved protein (DUF2358)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.2e-05     0.071      20      50 ..      58      85 ..      42     137 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.2e-05
     DUF2358 20 dysiYsedviFedpltkfkglerYkkilall 50
                + s++++d iF+dplt+ +g ++Y ++   +
  KKY16987.1 58 KLSLWKPDAIFKDPLTTAEGHKQYAAQ---W 85
                67899*******************999...3 PP

>> SURF1  SURF1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.096     163     176 .]      51      90 ..       3      90 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
       SURF1 163 l..........................hlgYaltWfglaa 176
                                            h +Ya++W+glaa
  KKY16987.1  51 AgkpslrklslwkpdaifkdplttaegHKQYAAQWYGLAA 90 
                 044444444555555556677777888***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.51
# Mc/sec: 1186.00
//
Query:       KKY16988.1  [L=726]
Description: putative universal stress protein family domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-20   73.2   0.3    9.3e-14   52.1   0.1    3.0  2  Usp       Universal stress protein family


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.2e-07     0.004       6      62 ..     492     548 ..     490     571 .. 0.83
   2 !   52.1   0.1   5.2e-18   9.3e-14      45     141 .]     588     687 ..     577     687 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.2e-07
                 EEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHH CS
         Usp   6 lVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeelele 62 
                 lVa+D s+e+ +Alew +    ++g++l+++++ ++++ +  +  +++++ e  + +
  KKY16988.1 492 LVATDLSDEAVYALEWTIGTILRDGDTLFAIYAQEEEPGTGKAGDNDQHYGEGTKVA 548
                 8**********************************9998887777777666655555 PP

  == domain 2  score: 52.1 bits;  conditional E-value: 5.2e-18
                 CCCCCCHHHHHHHHHHHHHHHHHHHH...HHHHHHCTTCEEEEEEEESSHHHHHHHHHHHTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEE CS
         Usp  45 gavsdadeeaeeeeleleeaeleada...akaaaeaggvkvevvveegdpaeeilevaeeedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvV 140
                 +++ d++   +++++ l++ e+  +    + ++++ ++ +   v++ ++p++ ++e+ + +++ l+++Gsrgrs+l+++llGS+s+y++ ++++pV+v 
  KKY16988.1 588 ATSVDSRHVGKTDSERLQAIESISQTcvrLLRKTRLQVRVAIEVIHCKSPKHLLTEAIDTLSPTLVILGSRGRSALKGVLLGSFSNYLVTKSSVPVMVA 686
                 5555566666677777777777776688899999***************************************************************97 PP

                 E CS
         Usp 141 r 141
                 r
  KKY16988.1 687 R 687
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 4334.12
//
Query:       KKY16989.1  [L=333]
Description: hypothetical protein UCRPC4_g05713 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-19   69.8   0.3    5.7e-19   68.0   0.3    2.1  1  DnaJ        DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.3   3.2e-23   5.7e-19       1      63 []      28      93 ..      28      93 .. 0.92

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 3.2e-23
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTS..CCHH.HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDkn..pkdp.eaeekFkeineAyevLsdpekRkqYD 63
                d+Y +L ++++a+++eI+kaYr  al+ HPDk   p+++ e +++F+e++ Ay +Lsdp ++++YD
  KKY16989.1 28 DPYTVLSLPRTATSSEITKAYRLSALRTHPDKAptPSQKeEYTQRFQEVAFAYAILSDPARKRRYD 93
                78*****************************9966344458999*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2078  (0.115902); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 2143.67
//
Query:       KKY16990.1  [L=635]
Description: putative carboxypeptidase s1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-76  256.9   0.1    8.9e-76  256.0   0.1    1.4  1  Peptidase_S10  Serine carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.0   0.1   4.9e-80   8.9e-76       8     419 .]      62     552 ..      54     552 .. 0.87

  Alignments for each domain:
  == domain 1  score: 256.0 bits;  conditional E-value: 4.9e-80
                    SSEEEEEEE........ECSTTTTEEEEEEEEE-SSGTTTS-EEEEE--TTTB-THHHHHHTTSSEEEE..TTTTSEEEE-TT-GGGCSEEEEE-- CS
  Peptidase_S10   8 nfkqysGYl........dveeeedkslFYwfveseknpeedplvlWLnGGPGCsSldGlleElGPfrvn..kdstkkleenpysWnkvanvlfldq 93 
                    + kqy+GY+         ++++ + ++F+wf+e++ +pe++pl++ LnGGPG+sS++Gl++E+GP++v   +++    e + + W++ ++vlf+dq
     KKY16990.1  62 SQKQYTGYVtvppftlsPIQQNYTVNTFFWFIEARMSPETAPLTIYLNGGPGSSSMIGLFQEVGPCEVVeiAEGLLGTEARDWGWDRSSHVLFVDQ 157
                    679******9999999999999*********************************************99666677888999*************** PP

                    STTSTT-EETTSSGS--SH......................................HHHHHHHHHHHHHHHHHSTCG..........TTSEEEEE CS
  Peptidase_S10  94 PvGvGFSysntksdvktdd......................................eevaedlyefLkkffekfpey..........ksrdfyit 141
                    P  vGFSy+   ++ + d                                         +a+ ++++L+ f+  fp+y          +   + + 
     KKY16990.1 158 PDQVGFSYDVLINA-SIDLltsaiieppialpasqhaysflngtfpsgdsnntanttAIAAQTVWHMLQGFLGAFPQYnpglvsnstnAAVGINLF 252
                    *********66555.223344669******************************9977778999**************999998865555578899 PP

                    EETTHHHHHHHHHHHHHTHCCH--S........STSEEEEEEEESE-SBHHHHHCCHHHHHHHTTSSHHHHHHHHHHHHEET.....HHHHHHHHH CS
  Peptidase_S10 142 GESYaGhyvPalakeilkknkkekk........kkinLkGlligNglideaeqvnsyvefayehgliseeeyeslkkacekk.....eeleqesek 224
                     ESY+G+y  a+a+   ++n  +++         +i+L +l i+Ng+id+  q + y++fay+    s + ++ ++++++ +     + ++q +++
     KKY16990.1 253 VESYGGKYGSAFASFWQSQNLLREQgllsknttLQIDLVSLGIINGCIDDLVQGPFYPKFAYSNTY-SIQALSLVDEQTAANaflatNGCQQLIKS 347
                    9************999888877777788888889*************************9887654.44555556666666666777999999999 PP

                    HHHHHHHHHHHHHHHHCHCEETTETTSEETTSSEE............HHHCTTCCCCTTTTTCHHHHHHHHTSHHHHHHTT--TTSSS--SB-HHH CS
  Peptidase_S10 225 canllekaskvavekenkglnvynileeccklkae............lkksstdaqggedpydesyvekylnkkeVrkalhvnasvkkweecndsv 308
                    c ++ ++ ++++      + +v n+++ c++++a+             +++ + +q++  p+ +++  +yln+++V++a++v+    +++  ++ v
     KKY16990.1 348 CRSQADSSDTDN------KGDVANVNAICYQATATcasevinvyaqsGRSYYDISQATLNPFPPNSFIEYLNQANVQSAIGVP---VNFTTTSTAV 434
                    999999998864......445555555554433333444555666657777788999************************98...7899999999 PP

                    ...HHHCTCCC-SBCHHHHHHHHHTT-EEEEEEETT-STT-HHHHHHHHHHTECTTECCSCCCEEEE....TTTCESEEEEEEEETTEEEEEETT- CS
  Peptidase_S10 309 ...feqleddisksveeileellesglrvliynGdvDlicnvlgteawikklelsgkkefrpwevsp....kkengqvaGyvkeyenltfltvkga 397
                       f++++d+ + +++e l  ll++g+rv +++Gd D++cn+lg ea++ ++  ++++++++w+         +++ ++G v+ey+nl+f ++++a
     KKY16990.1 435 tgaFNATGDYERGDYIESLAWLLSQGIRVALIYGDRDYVCNWLGGEAVSFAVAGAIQSDYSQWYNAGyapiIVNDSYIGGVVREYGNLSFSRIYDA 530
                    9999*****************************************************99999999768888899999******************* PP

                    -SSHHHHSHHHHHHHHHHHHTT CS
  Peptidase_S10 398 GHmvPedkpeealqllerfisg 419
                    GH vP ++pe a+++++r+i+g
     KKY16990.1 531 GHLVPAYQPETAFTVFTRVIEG 552
                    ******************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 4156.28
//
Query:       KKY16991.1  [L=794]
Description: putative meiosis induction protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-55  188.5   0.0    2.1e-55  187.9   0.0    1.2  1  Pkinase          Protein kinase domain
    1.3e-30  106.6   0.0    6.9e-29  100.9   0.0    2.1  2  Pkinase_Tyr      Protein tyrosine kinase
  ------ inclusion threshold ------
      0.064   12.2   0.0      0.096   11.6   0.0    1.2  1  Haspin_kinase    Haspin like kinase domain
       0.17   10.8   0.0       0.23   10.4   0.0    1.1  1  Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
        1.6    9.6   5.7         20    6.0   0.9    2.9  2  LCE6A            Late cornified envelope protein 6A family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.9   0.0   5.9e-59   2.1e-55       1     264 []      20     347 ..      20     347 .. 0.87

  Alignments for each domain:
  == domain 1  score: 187.9 bits;  conditional E-value: 5.9e-59
                 EEEEEEEEEESSEEEEEEEETTTTEEE.......EEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkiv.......AvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee..kdelylvleyveggeladll 89 
                 +e+++++G GsfG+V+ a+ ++ g  v       A+K++kk  ++  +    lrEi +l++l  h ++v  +++f +  +++l++++ey++g+ l +l+
  KKY16991.1  20 FEVIKEIGDGSFGSVVLARTRTAGSNVarrgtliAIKTMKKTFESFHSC-LELREIIFLRTLPsHTHLVPALDIFLDpiTKKLHICMEYMDGN-LYQLM 116
                 67899**************998776551111111688888887776665.679*********99*************999***********66.88888 PP

                 H..HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEET.......................TTEEEE-SGTTSEESSSSCSBCTTTSCGGG CS
     Pkinase  90 e..rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLide.......................kgelKitDFGlakelessskltsfvgtseY 163
                 +  +++ l+ + +k+i+ qil gl+++Hs+ ++HrD+KpeNiL+++                       +  +Ki+DFGla+e +s+ ++t++v t++Y
  KKY16991.1 117 KarDHKPLDGKSVKSILFQILGGLDHIHSHDFFHRDIKPENILVSTsaphenstfsrysalvtppstppTYSIKIADFGLARETHSKLPYTTYVSTRWY 215
                 8777788**************************************668888888888877777776665555*************************** PP

                 S-HHHH.TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS............................ CS
     Pkinase 164 lAPEvl.keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei............................ 233
                 +APEvl ++ eys++vD+W++G + +e+ t kp+f+   g +    e+dq+ ++++i+g   + +++a                               
  KKY16991.1 216 RAPEVLlRAGEYSAPVDIWAIGAMAVEIATLKPLFP---GGN----EVDQVWRVCEIMGSPGNWYNKAG-Trvgggdwregtrlaqklgfafpkmaphs 306
                 ******99****************************...333....68888888888984332222222.146888888889999999*********** PP

                 ..........-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 ..........seeakdllkkllkkdpkkRltaeellqhpyl 264
                           +  + ++++++l +dpk+R+t +++l+h+y+
  KKY16991.1 307 metilqapqwPAALSHFVTWCLMWDPKNRPTSKQALEHEYF 347
                 ****************************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.0   1.9e-32   6.9e-29       2     201 ..      21     246 ..      20     265 .. 0.92
   2 ?    3.4   0.1     0.011        39     224     255 ..     310     341 ..     298     344 .. 0.82

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 1.9e-32
                  EEEEEEEEESSEEEEEEEEET...TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkg...ekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvct..keepllivteyvkgGdLlkfLr 93 
                  e+ k++G G+fG+Vv ++ ++   +  ++ + +a+Kt+k++ ++ ++   l+e+ ++++l +h ++v  l + +   +++l i +ey++ G+L + ++
   KKY16991.1  21 EVIKEIGDGSFGSVVLARTRTagsNVARRGTLIAIKTMKKTFESFHSCLELREIIFLRTLpSHTHLVPALDIFLdpITKKLHICMEYMD-GNLYQLMK 117
                  5789***************9988777888999*************999999***********************877889********7.8******* PP

                  HTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.......................TTEEEE-STTTHEETTTSSEEEETTSSTSG CS
  Pkinase_Tyr  94 kkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.......................nkvvkisDfGLardiekddeyvkkeeaklp 168
                  ++++++l+ k++ s+ +q+  G+++++s+++ Hrd+   N+L+s+                       +  +ki+DfGLar+++++  y    ++ ++
   KKY16991.1 118 ARDHKPLDGKSVKSILFQILGGLDHIHSHDFFHRDIKPENILVSTsaphenstfsrysalvtppstppTYSIKIADFGLARETHSKLPY----TTYVS 211
                  ********************************************99*********************999*************555555....56788 PP

                  GGGS.-HHHH.HHSEEEHHHHHHHHHHHHHHHHTT CS
  Pkinase_Tyr 169 vkWm.apEsl.kekkftsksDvWsfGvllwEiftl 201
                   +W+ apE+l ++++++   D+W+ G +  Ei+tl
   KKY16991.1 212 TRWYrAPEVLlRAGEYSAPVDIWAIGAMAVEIATL 246
                  88987***9626788*****************995 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.011
                  S-BBTTSBHHHHHHHHHHT-SSGGGS--HHHH CS
  Pkinase_Tyr 224 lekpekcpeelyelmkkcweedpeeRptfsel 255
                  + +  ++p++l ++++ c+  dp++Rpt ++ 
   KKY16991.1 310 ILQAPQWPAALSHFVTWCLMWDPKNRPTSKQA 341
                  4455679********************98875 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.7e-05     0.096     206     257 ..     127     200 ..      93     213 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.7e-05
  Haspin_kinase 206 kqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdkn.......................lnvtlidlklsRle 257
                    k ++si++qi+  L     + +F HRd++ +niLv  +                         + + d+ l+R +
     KKY16991.1 127 KSVKSILFQILGGLDHIH-SHDFFHRDIKPENILVSTSaphenstfsrysalvtppstpptYSIKIADFGLARET 200
                    7899**********9986.679**************999*********************99**********986 PP

>> Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   6.5e-05      0.23     297     316 ..     145     164 ..     127     198 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.5e-05
  Pox_ser-thr_kin 297 cenflhvDlkPdniLifdsk 316
                       + f+h D+kP+niL+  s 
       KKY16991.1 145 SHDFFHRDIKPENILVSTSA 164
                      678************98774 PP

>> LCE6A  Late cornified envelope protein 6A family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.9    0.0056        20       6      34 ..     406     434 ..     404     443 .. 0.85
   2 ?    4.7   0.2     0.014        51      16      46 ..     711     742 ..     705     762 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0056
       LCE6A   6 qqsselpnapkcspPkrknpslapcsapC 34 
                 qq s+ p ap +  P+r+ p+ +  ++  
  KKY16991.1 406 QQLSNRPTAPEVEQPQRPRPAASKRATWT 434
                 8999****************998877655 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.014
       LCE6A  16 kcspPkrknps.lapcsapCgascsgGCssts 46 
                 + s+P+++n+s + p+++p +++  +G + ++
  KKY16991.1 711 RQSMPQNSNLSvPNPYPTPSPSAKRDGVHFGQ 742
                 5799*****984689******99999987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (794 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 5204.55
//
Query:       KKY16992.1  [L=292]
Description: hypothetical protein UCRPC4_g05716 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-20   73.6  12.1    1.4e-20   73.6  12.1    2.3  2  Stc1            Stc1 domain
     0.0047   17.1   3.3      0.017   15.2   0.3    2.8  2  Rsm1            Rsm1-like
  ------ inclusion threshold ------
      0.021   15.1   1.5       0.94    9.8   0.0    2.6  2  DUF2197         Uncharacterized protein conserved in bacteria
       0.57   10.7  13.4         11    6.6   2.9    2.8  2  zf-CHY          CHY zinc finger
        2.2    8.5  12.0          8    6.7   1.0    3.4  3  Zn-ribbon_8     Zinc ribbon domain
        9.8    6.2  16.2    4.1e+03   -2.2  16.2    2.9  1  zinc-ribbons_6  zinc-ribbons


Domain annotation for each model (and alignments):
>> Stc1  Stc1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.99     3e+03      40      47 ..      20      27 ..      11      32 .. 0.59
   2 !   73.6  12.1   4.7e-24   1.4e-20       1      85 []      42     122 ..      42     122 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.99
                ---TTTS- CS
        Stc1 40 ikCkecta 47
                  C++c++
  KKY16992.1 20 FLCQTCQS 27
                34444443 PP

  == domain 2  score: 73.6 bits;  conditional E-value: 4.7e-24
                 E-SSS--EEETTTS-HHHHHTTTTEEEE-S-.......----TTTS-----EEE-SSS--EEESTTS-HHHHHS.SS---HHHHT CS
        Stc1   1 kCkeckkkkplseFSkkqlkklekklaeekakvkkakskikCkectakqateleCsaCqktkpldeFsksqrrkpdaarCkdCva 85 
                 kC++c+k++++++FS+kql++++ +++     +++  +  +C++c+++q+tel+C+ C++tk+l +Fsk+qrr+pdaarC+dCv+
  KKY16992.1  42 KCATCQKNRTQAAFSSKQLNEYKVRMNM----ARHNAKLPRCRTCVGGQVTELTCNNCGETKGLFAFSKAQRRNPDAARCIDCVQ 122
                 8*********************777744....34455689*******************************************96 PP

>> Rsm1  Rsm1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.12   3.5e+02      18      46 ..      39      67 ..      29      81 .. 0.77
   2 !   15.2   0.3   5.8e-06     0.017      18      62 ..      88     132 ..      68     159 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.12
        Rsm1 18 glvsCeaCfrrlGLWmfkskedgelsvvk 46
                +++ C +C +     +f+sk+ +e +v  
  KKY16992.1 39 SSIKCATCQKNRTQAAFSSKQLNEYKVRM 67
                5899****999999999999998777544 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 5.8e-06
        Rsm1  18 glvsCeaCfrrlGLWmfkskedgelsvvkrldvleeHleycPwkn 62 
                 + ++C+ C    GL +f++ +  + +  + +d ++eHl+  P   
  KKY16992.1  88 TELTCNNCGETKGLFAFSKAQRRNPDAARCIDCVQEHLDIEPNLE 132
                 4679**********************************9999643 PP

>> DUF2197  Uncharacterized protein conserved in bacteria (DUF2197)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00032      0.94      14      42 ..       2      30 ..       1      34 [. 0.81
   2 ?    1.8   2.2     0.097   2.9e+02       3      34 ..      41      70 ..      39      82 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00032
     DUF2197 14 iddesllaKrLrNrpihtYmCkeCeeRia 42
                i+d sl   r+  +  +t++C++C++ ++
  KKY16992.1  2 IQDASLSGSRFLLQGHKTFLCQTCQSHVT 30
                67777777788888899********9986 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.097
     DUF2197  3 vkCvlCdkveeiddesllaKrLrNrpihtYmC 34
                +kC  C+k  +  +  + +K+L   ++++ m 
  KKY16992.1 41 IKCATCQKNRT--QAAFSSKQLNEYKVRMNMA 70
                89****99886..7889999999999998885 PP

>> zf-CHY  CHY zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   2.9    0.0036        11      17      53 ..      17      52 ..      12      64 .. 0.73
   2 ?    5.5   9.3    0.0083        25      21      62 ..      42      97 ..      40     128 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0036
      zf-CHY 17 kklyaCreCHeeledhelerlevkevlcllCeteqek 53
                +k++ C++C ++++ + +  +++++++c +C++++++
  KKY16992.1 17 HKTFLCQTCQSHVTPNGVL-ANESSIKCATCQKNRTQ 52
                68999****9966655554.45566899999987654 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0083
      zf-CHY 21 aCreCH..............eeledhelerlevkevlcllCeteqekavlCkkCkk 62
                +C +C               e + + ++ r+++k   c +C   q ++ +C++C++
  KKY16992.1 42 KCATCQknrtqaafsskqlnEYKVRMNMARHNAKLPRCRTCVGGQVTELTCNNCGE 97
                46677644444333333332334455666666666667777776666667777766 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.9    0.0041        12       6      36 ..      20      51 ..      19      55 .. 0.79
   2 ?    2.0   0.1     0.075   2.2e+02      19      37 ..      67      88 ..      61      91 .. 0.63
   3 ?    6.7   1.0    0.0027         8       6      33 ..      90     121 ..      89     125 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0041
  Zn-ribbon_8  6 YrCeeCghefevlqsisdapltaCPeCgs.ev 36
                 + C+ C++  ++    + ++ ++C +C++ ++
   KKY16992.1 20 FLCQTCQSHVTPNGVLANESSIKCATCQKnRT 51
                 77*********776666777899****98555 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.075
  Zn-ribbon_8 19 qsis..dapltaCPeCgs.evr 37
                 + ++   a+l+ C +C + +v+
   KKY16992.1 67 MNMArhNAKLPRCRTCVGgQVT 88
                 555553445666****877776 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0027
  Zn-ribbon_8   6 YrCeeCghefe..vlqsis.daplta.CPeCg 33 
                    C++Cg++    ++ ++  ++p+ a C +C 
   KKY16992.1  90 LTCNNCGETKGlfAFSKAQrRNPDAArCIDCV 121
                  67*****6665887777777888888899995 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2  16.2       1.4   4.1e+03       2      25 ..      21      62 ..      20     129 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.4
                    --SSS-S--EE-S.....SEEE-TTT--.............E CS
  zinc-ribbons_6  2 kCpeCqqelekrg.....eqyhCeaCqe.............d 25
                     C++Cq++++ +g     ++++C +Cq+             +
      KKY16992.1 21 LCQTCQSHVTPNGvlaneSSIKCATCQKnrtqaafsskqlnE 62
                    59*****999888899989999****9955555444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1157  (0.0645323); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.53
# Mc/sec: 1669.78
//
Query:       KKY16993.1  [L=728]
Description: hypothetical protein UCRPC4_g05717 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.58
# Mc/sec: 3808.85
//
Query:       KKY16994.1  [L=563]
Description: putative small nucleolar ribonucleoprotein complex [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-41  140.3   1.1    1.3e-37  127.4   0.0    3.4  4  BING4CT      BING4CT (NUC141) domain
    4.2e-06   27.4   0.7      0.088   13.7   0.0    4.6  6  WD40         WD domain, G-beta repeat
    3.7e-05   23.9   0.0        1.3    9.4   0.0    5.0  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> BING4CT  BING4CT (NUC141) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       0.6   3.6e+03      11      26 ..     213     228 ..     208     236 .. 0.73
   2 !    9.8   0.0   0.00012      0.69      12      45 ..     256     289 ..     247     298 .. 0.85
   3 !  127.4   0.0   2.2e-41   1.3e-37       1      79 []     383     461 ..     383     461 .. 0.99
   4 ?   -2.6   0.2      0.84     5e+03      52      67 ..     530     545 ..     518     547 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.6
     BING4CT  11 kieslrFvpfeDvlgv 26 
                 + ++l+F p++ +l+ 
  KKY16994.1 213 EATHLEFLPYHFLLAG 228
                 56889*****977764 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00012
     BING4CT  12 ieslrFvpfeDvlgvghskgissiivPGsGepnf 45 
                  + l+  p++ +l vgh++g  s+  P s ep +
  KKY16994.1 256 PTALSQNPWNAILHVGHQNGSVSLWSPNSTEPLV 289
                 5667778************************975 PP

  == domain 3  score: 127.4 bits;  conditional E-value: 2.2e-41
     BING4CT   1 pYlthklpgskieslrFvpfeDvlgvghskgissiivPGsGepnfdaleanpfetkkqrrereVrsLLeKlqpelItld 79 
                 pY++h+lp+s+i++++F+pfeD+lgv+h++g++s+ivPGsGepnfd+le np+et+kqr+ +eVrsLL+Klqpe+I+ld
  KKY16994.1 383 PYMSHHLPSSPIQNVQFCPFEDILGVSHTTGFTSLIVPGSGEPNFDSLELNPYETTKQRQTTEVRSLLNKLQPETIALD 461
                 8****************************************************************************98 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 0.84
     BING4CT  52 pfetkkqrrereVrsL 67 
                   + k++r+ere ++L
  KKY16994.1 530 LEKMKRERQEREKKKL 545
                 4566788999987776 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.5   8.9e+03      10      28 ..     170     190 ..     168     202 .. 0.72
   2 ?   -2.6   0.0       2.1   1.2e+04      10      17 ..     200     209 ..     191     228 .. 0.56
   3 ?    2.3   0.0      0.06   3.6e+02      22      38 .]     265     281 ..     244     283 .. 0.74
   4 !   13.7   0.0   1.5e-05     0.088       4      38 .]     288     323 ..     285     323 .. 0.90
   5 !    5.7   0.1    0.0052        31       2      38 .]     328     362 ..     327     362 .. 0.67
   6 ?   -2.7   0.1       2.2   1.3e+04       9      25 ..     387     406 ..     381     413 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.5
                 S.SS.EEEEEEETTSSEEEEE CS
        WD40  10 H.ss.vtslafspdgawlasG 28 
                 H +  v++ ++ ++ +++a +
  KKY16994.1 170 HlNEvVRDAKWLHNDQYFAVA 190
                 666746999999999998754 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.1
                 SSS..EEEEE CS
        WD40  10 Hss..vtsla 17 
                 H +  +++l+
  KKY16994.1 200 HAGveIHCLR 209
                 6344467774 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.06
                 SSEEEEEETTSEEEEEE CS
        WD40  22 gawlasGsdDgtvriWd 38 
                 +a l  G+ +g+v +W+
  KKY16994.1 265 NAILHVGHQNGSVSLWS 281
                 3333249999***9995 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 1.5e-05
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 l ++ +H ++v+++  ++ g++++sG+ D ++++Wd
  KKY16994.1 288 LVKIQAHaGPVRAMGIDRQGRYMLSGGQDLKLKLWD 323
                 556789*889*************************9 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.0052
                 EEEEEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGHssvtslafspdgawlasGsdDgtvriWd 38 
                 + ++t+++H++ +s++ s+  + la+ s + +v iW+
  KKY16994.1 328 KEVHTYRTHNPASSISISD--RGLAAVSTNTSVTIWK 362
                 689******7755553333..3355445599999995 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 2.2
                 SS...SSEEEEEEETTSSEE CS
        WD40   9 GH...ssvtslafspdgawl 25 
                  H   s++  ++f+p  + l
  KKY16994.1 387 HHlpsSPIQNVQFCPFEDIL 406
                 35653459999999987765 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.19   1.1e+03      46      75 ..     139     168 ..     137     183 .. 0.79
   2 ?    0.7   0.0      0.11   6.4e+02      38      59 ..     172     193 ..     160     201 .. 0.86
   3 ?    2.6   0.0     0.028   1.6e+02      40      82 ..     213     255 ..     208     262 .. 0.83
   4 !    9.4   0.0   0.00021       1.3      36      85 ..     251     299 ..     241     302 .. 0.82
   5 !    6.3   0.0     0.002        12      38      82 ..     295     339 ..     292     353 .. 0.89
   6 ?   -2.1   0.0       0.8   4.8e+03      41      60 ..     394     413 ..     385     424 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.19
  ANAPC4_WD40  46 WkpdgklLavaysdgevrlldaesgkvvhs 75 
                  +  +g+ L  a  +g++  ++   gk   +
   KKY16994.1 139 YTRNGRSLLLAGRKGHIATCEWRAGKPGCE 168
                  7789**************999998886555 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.11
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysd 59 
                  ++ vr+ +W ++++ +ava ++
   KKY16994.1 172 NEVVRDAKWLHNDQYFAVAQKK 193
                  5679999***********9875 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.028
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek 82 
                  e ++L++ p   lLa   + g +r  d ++g++v ++++ + +
   KKY16994.1 213 EATHLEFLPYHFLLAGIENSGFLRYTDTSTGQIVAEYPTRKGS 255
                  667888888888888888899****************998874 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.00021
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                  +++++ ++L+ +p + +L v++++g+v+l + +s++ + ++++++   v 
   KKY16994.1 251 TRKGSPTALSQNPWNAILHVGHQNGSVSLWSPNSTEPLVKIQAHAGP-VR 299
                  566666889999999**************************999874.55 PP

  == domain 5  score: 6.3 bits;  conditional E-value: 0.002
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek 82 
                   + vr++    +g+ +  + +d +++l d+   k vh++++++  
   KKY16994.1 295 AGPVRAMGIDRQGRYMLSGGQDLKLKLWDIRMFKEVHTYRTHNPA 339
                  678999999*******************************99874 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 0.8
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdg 60 
                  ++++++ p + +L v++  g
   KKY16994.1 394 IQNVQFCPFEDILGVSHTTG 413
                  66666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 3372.26
//
Query:       KKY16995.1  [L=789]
Description: putative pre-rrna processing protein tsr1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.1e-106  355.6   0.0   4.7e-106  354.5   0.0    1.6  2  RIBIOP_C  40S ribosome biogenesis protein Tsr1 and BMS1 C-ter
    1.8e-20   72.8   0.0    3.9e-20   71.7   0.0    1.6  1  AARP2CN   AARP2CN (NUC121) domain


Domain annotation for each model (and alignments):
>> RIBIOP_C  40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.42   3.8e+03      32     163 ..      45      75 ..      16     111 .. 0.57
   2 !  354.5   0.0  5.2e-110  4.7e-106       1     292 []     491     779 ..     491     779 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.42
    RIBIOP_C  32 nlpeeyarifefenfketkkrvlkealeeregvegGtyvrleiknvpeelveeknfdekkplivfgllphEekvsvvnvrikrhreyekpikskdplif 130
                                                                                                                    
  KKY16995.1  45 R-------------------------------------------------------------------------------------------------- 45 
                 3.................................................................................................. PP

    RIBIOP_C 131 svGfRrfqakPifsqedtknnkhklerylkpgh 163
                   G Rr   + + s+   ++n  k +r  ++++
  KKY16995.1  46 --GKRRTPHQQVMSKLA-RRNHAKQLRLHHHEK 75 
                 ..444444444444444.244444444444433 PP

  == domain 2  score: 354.5 bits;  conditional E-value: 5.2e-110
    RIBIOP_C   1 vetpedvearerfakyrglkslrtsewdpken...lpeeyarifefenfketkkrvlkealeeregvegGtyvrleiknvpeelveeknfdekkplivf 96 
                 +e++++++arer+akyrglkslrtsew+++ +   +pee++r++++ ++k++k ++++e+l   +g+++Gt+v++e+ +vp+e+++     +++p+ +f
  KKY16995.1 491 IELHPNISARERLAKYRGLKSLRTSEWNTEADapyEPEEHRRLLQIPDYKKSKAQATRESLV--GGIAAGTRVEVEVLRVPSEFKA-----SSSPTCMF 582
                 6899***********************99999999************************999..********************99.....468***** PP

    RIBIOP_C  97 gllphEekvsvvnvrikrhreyekpikskdplifsvGfRrfqakPifsqed.tknnkhklerylkpghtcvatfygpitfpntpvlafkelsskeasfr 194
                  ll+hE+k +v+n++++ ++++e+p+ksk++li+++G Rrf++ P+fs +  t+n++hk +ryl+pg++++a+f gp+t++ +p+l+f+++ s +++++
  KKY16995.1 583 ALLRHEHKHTVININLTLNSDVEAPLKSKEELIIQIGSRRFVVHPVFSAAGnTPNDVHKSDRYLHPGRSTIASFTGPLTWGAVPILVFRRSFSGSNPLN 681
                 ***************************************************669***********************************998889**** PP

    RIBIOP_C 195 lvatGsvlevdpsriivkrivLtGhpfkihkktaviryMFfnpedvawFkpveLrTksGrrGhIkeslgthGyfkatFddklkqsDiVlmslYkrvfp 292
                 l++t ++l ++ srii+kr++LtGhp+kihkk +++ryMFfn+edvawFk+++L+Tk+Gr+G+IkeslgthGyfkatFd+k++++D V +slYkrv+p
  KKY16995.1 682 LIGTATTLPSSASRIIAKRVILTGHPYKIHKKLVTVRYMFFNDEDVAWFKAMPLWTKRGRQGYIKESLGTHGYFKATFDGKINPMDAVGISLYKRVWP 779
                 *************************************************************************************************8 PP

>> AARP2CN  AARP2CN (NUC121) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.0   4.4e-24   3.9e-20       2      84 ..     235     312 ..     234     314 .. 0.96

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 4.4e-24
     AARP2CN   2 ilnllrfisvqkfrplswReqrpyiladrveiltdseskeeeskedrtlsveGyvrGsplsanqlvHipglGDfqiekieklp 84 
                 + nl+r ++++ ++ ++wR++r++++++ +++ +++ ++      ++++ ++G+vrG++l++++lvH+pg+GD+qi +i ++p
  KKY16995.1 235 TANLVRSLCTAATKGIRWRDERSWMVIEGIQWPASNLED-----GKESVILKGVVRGRGLNPDRLVHLPGWGDYQIGRIMEIP 312
                 68********************************99999.....9**********************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 4745.91
//
Query:       KKY16996.1  [L=215]
Description: putative carbonic anhydrase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-47  159.2   0.0    1.2e-46  158.9   0.0    1.1  1  Pro_CA    Carbonic anhydrase


Domain annotation for each model (and alignments):
>> Pro_CA  Carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.9   0.0   6.7e-51   1.2e-46       1     156 []      42     192 ..      42     192 .. 0.95

  Alignments for each domain:
  == domain 1  score: 158.9 bits;  conditional E-value: 6.7e-51
                 EEEEEETTTTS-HHHHTTS-TTSEEEEEETTG---TT-HHHHHHHHHHHHTS--SEEEEEEETT-HHHHHHHSHHCCSTTSSHHHHHHHHHHHHHHHCH CS
      Pro_CA   1 alvigCsDSRvppelitdagpGdlFvvrnvgnlvppadssvlaaleyAvevlkvkhivVlGHskCGavkaalkaekseeeagaidkwlekirealekve 99 
                 +l+igCsDSR+p+++i++ +pGd+Fv+rn++n+++p+d s+ +++eyAv  l+v+hivV+GH++CG+v+aal +    ++ g id+wl ++r+ ++k+ 
  KKY16996.1  42 ILWIGCSDSRCPETTILGLKPGDVFVHRNIANVINPTDLSLNSVIEYAVIYLGVSHIVVCGHTSCGGVAAALGN----KKLGMIDTWLLPLRSLRQKHL 136
                 59*******************************************************************99974....3479****************9 PP

                 HHHHTTSSHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHTTS-EEEEEEEETTTTEE CS
      Pro_CA 100 eelesekekearerlleeenVaeqlenLlekpvvreavekgklkvhGlvydletGev 156
                 +el+s ++kea  +l +e+nV++ +++L+e+p+v +a++++ l++hGl+yd+ +G++
  KKY16996.1 137 SELRSLESKEAALKL-VELNVEKGIATLKENPTVIDAIAERGLQLHGLIYDVGSGKL 192
                 999999888877777.***************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.32s 00:00:00.84 Elapsed: 00:00:00.52
# Mc/sec: 1251.74
//
Query:       KKY16997.1  [L=351]
Description: putative methyltransferase type 11 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-21   74.7   0.0    1.1e-20   74.1   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    3.1e-14   53.0   0.0    8.6e-06   25.6   0.0    2.2  2  Methyltransf_31  Methyltransferase domain
    6.4e-14   52.4   0.0    2.7e-13   50.4   0.0    2.1  1  Methyltransf_25  Methyltransferase domain
    6.2e-12   46.0   0.0    1.2e-11   45.0   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    1.3e-09   38.6   0.0    1.4e-08   35.3   0.0    2.5  1  Methyltransf_12  Methyltransferase domain
    7.4e-05   22.4   0.0    0.00013   21.6   0.0    1.3  1  MTS              Methyltransferase small domain
     0.0008   19.6   0.0     0.0012   19.0   0.0    1.3  1  FtsJ             FtsJ-like methyltransferase
     0.0016   17.8   0.0     0.0026   17.1   0.0    1.3  1  CMAS             Mycolic acid cyclopropane synthetase
     0.0035   16.8   0.0     0.0058   16.1   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.028   13.9   0.0    1.5  1  Methyltransf_4   Putative methyltransferase
      0.018   14.4   0.0       0.19   11.1   0.0    2.3  3  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.046   13.4   0.0      0.072   12.8   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase
       0.16   11.4   0.0        6.9    6.0   0.0    2.1  2  TehB             Tellurite resistance protein TehB


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.0   8.2e-24   1.1e-20      18     162 ..     124     281 ..     102     284 .. 0.73

  Alignments for each domain:
  == domain 1  score: 74.1 bits;  conditional E-value: 8.2e-24
  Methyltransf_23  18 pklraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevl.ehvpdppellrqiat 107
                      +  ++++r Ld+GcGtGi++ +++++    +v+gvDlsp++ ++++ + k+ ++d +  + ++ pq++fdlI +r ++ ++++++  ++ qi++
       KKY16997.1 124 APVNSPQRALDLGCGTGIWAIEFADENPqaEVYGVDLSPIQPGWVPpNVKFEIDDVE--DTWTWPQDHFDLIFSRLMIsGSIQNLRNYIEQIYR 215
                      3369999****************8885545**************9876666666666..77888**********977758************** PP

  Methyltransf_23 108 llkpgGylllseplasl...........kedrllldw.lylvpagrhisffsarslkelleeaGlev 162
                      +++pgGy++ +e+  ++           + + +++++ + + +++r +   + +++++ ++e G+ +
       KKY16997.1 216 HTAPGGYFESHEIKIEAhndlkpvpeecPVNLWAKYMrEGISKMNRNL-APDLDAIATTMREVGFVD 281
                      ************866654445555444444444444433444443333.446677777777777765 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   6.2e-09   8.6e-06       5      38 ..     130     162 ..     127     164 .. 0.90
   2 !   25.3   0.0   8.1e-09   1.1e-05      55     130 ..     171     248 ..     168     278 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 6.2e-09
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       r lDlGCGtG  ++e+a   +p+aev+G+D s+
       KKY16997.1 130 QRALDLGCGTGIWAIEFA-DENPQAEVYGVDLSP 162
                      578***************.569*********997 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 8.1e-09
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevl.naladpdkileeiervlkpggilliedprllaelp.akveeeskay.e 130
                      nv+Fe+ d+e+     + ++ fDli+s+  +   + ++ +++e+i r   pgg++ + +++++a ++ + v ee+ ++ +
       KKY16997.1 171 NVKFEIDDVEDtWT--WPQDHFDLIFSRLMIsGSIQNLRNYIEQIYRHTAPGGYFESHEIKIEAHNDlKPVPEECPVNlW 248
                      9**********666..************999999***************************8888888888888886552 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0     2e-16   2.7e-13       2      97 .]     133     221 ..     132     221 .. 0.88

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 2e-16
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG.BSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaed.lpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      LdlGcGtG +++++a++ ++a+v+gvD+s+ +   +        +nv+f+  d+ed +  ++++fDl++s+ ++   s ++l++++++i+r++ 
       KKY16997.1 133 LDLGCGTGIWAIEFADENPQAEVYGVDLSPIQPGWV-------PPNVKFEIDDVEDtWTWPQDHFDLIFSRLMI-SGSIQNLRNYIEQIYRHTA 218
                      9****************879**********997754.......3588*******88567899********7554.457789************* PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      pgG
       KKY16997.1 219 PGG 221
                      **9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0     9e-15   1.2e-11       1      94 [.     133     223 ..     133     224 .. 0.93

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 9e-15
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCT.SS-TT-EEEEEEES-CCC-.CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaekl.pfednsfDlvvssevlhhv.edpekalkeiaRvLkp 90 
                      Ld+GcGtG+ a ++a+    a+v+gvDls+ +  ++      ++ +v+f   d+e++   + + fDl++s+ ++    ++++ ++++i+R   p
       KKY16997.1 133 LDLGCGTGIWAIEFADENpqAEVYGVDLSPIQPGWV------PP-NVKFEIDDVEDTwTWPQDHFDLIFSRLMISGSiQNLRNYIEQIYRHTAP 219
                      8**************77779************9887......33.489999****9889****************999**************** PP

                      EEEE CS
  Methyltransf_11  91 gGll 94 
                      gG++
       KKY16997.1 220 GGYF 223
                      **98 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0     1e-11   1.4e-08       1      99 []     133     223 ..     133     223 .. 0.81

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1e-11
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl.kdirevldnirklL 93 
                      L++GcGtG  + ++++++p++e++gvD+sp +          + +  n ++e+++ ++  + ++++fDl+++   ++   +++r ++++i+++ 
       KKY16997.1 133 LDLGCGTGIWAIEFADENPQAEVYGVDLSPIQP--------GWVP-PNVKFEIDDVEDTWTWPQDHFDLIFSRLMISGSiQNLRNYIEQIYRHT 217
                      8*****************************999........4443.23334444444444444579*******8888777************** PP

  Methyltransf_12  94 kpgGrl 99 
                      +pgG++
       KKY16997.1 218 APGGYF 223
                      ****85 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   9.2e-08   0.00013      31      64 ..     128     161 ..     111     164 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 9.2e-08
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                   +++lDlGcG+G+ ++++a+e+p+aev  vd +
  KKY16997.1 128 SPQRALDLGCGTGIWAIEFADENPQAEVYGVDLS 161
                 45679************************99976 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   8.5e-07    0.0012      21      73 ..     128     182 ..      85     216 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 8.5e-07
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCCS CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditdp 73 
                   ++++Dlg+++G w+   + +   ++ v++vDl p++p    p+v++   d+ d 
  KKY16997.1 128 SPQRALDLGCGTGIWAIEFADENP-QAEVYGVDLSPIQPGwvpPNVKFEIDDVEDT 182
                 3378***********988777755.59**********9877789999988888765 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.9e-06    0.0026      60     219 ..     126     288 ..     100     310 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.9e-06
                 --TT-EEEEES-TTSHHHHHHH.HHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG-----SEEEEES-GGGTSGGGHHHHHHHHHHHS- CS
        CMAS  60 lkpGmtlLdiGcGWGslvrrav.erydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedldekvdrvvsvgafehvgkenydtffkklkkllk 157
                 ++  ++ Ld+GcG G  +++ + e+ +++v g+ lS  q  ++  +v+ +  +   +v+   +   ++++d + s  ++     +n+ ++++++++ + 
  KKY16997.1 126 VNSPQRALDLGCGTGIWAIEFAdENPQAEVYGVDLSPIQPGWVPPNVKFEI-D---DVE-DTWTWPQDHFDLIFSRLMISG-SIQNLRNYIEQIYRHTA 218
                 5566789********988776616679****************99987432.2...232.35777789*******999975.689************** PP

                 TT-EEEEEEEEE--HHHHHCTTCCC......HHHHHHT..STTS---BHHHHHHHHHHTT-EEEEEEE-H CS
        CMAS 158 edGllllhtitslhkkelaerglkl......kfidkei..FPgGelpsieeieeeiseagftvvdveslr 219
                 ++G +  h i +  ++ l+    +       k++++ i        p +++i+++++e+gf  v v+s++
  KKY16997.1 219 PGGYFESHEIKIEAHNDLKPVPEECpvnlwaKYMREGIskMNRNLAPDLDAIATTMREVGFVDVVVKSFQ 288
                 **********999888877555444667888888888832344557889999999999998777776665 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.2e-06    0.0058     160     256 ..     127     223 ..     114     234 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.2e-06
        PrmA 160 kegeevlDvGtGSGiLaiaaakLg.akkvvavDiDevAvkvakeNaelNkveaklevalseellkeekadvivaNILa....evlielaedikklvkeg 253
                 ++ ++ lD+G+G+Gi ai  a  +  ++v++vD+ ++       N+++  +++      + + ++  ++d+i++  +     + l + +e+i+++ ++g
  KKY16997.1 127 NSPQRALDLGCGTGIWAIEFADENpQAEVYGVDLSPIQPGWVPPNVKFE-IDDV---EDTWTWPQ-DHFDLIFSRLMIsgsiQNLRNYIEQIYRHTAPG 220
                 567889************8665551679********9988888888764.3332...23456666.678888887654111134555678888888888 PP

        PrmA 254 gll 256
                 g++
  KKY16997.1 221 GYF 223
                 887 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     2e-05     0.028       5      34 ..     132     161 ..     129     165 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES- CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEir 34 
                      l++GcG G + ++ A +nP+ ++ G++++
      KKY16997.1 132 ALDLGCGTGIWAIEFADENPQAEVYGVDLS 161
                     58************************9975 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00013      0.19      45      81 ..     126     161 ..     115     164 .. 0.87
   2 ?   -3.1   0.0       2.9     4e+03     134     153 ..     208     227 ..     188     237 .. 0.73
   3 ?   -0.0   0.0      0.33   4.5e+02     198     221 ..     264     287 ..     247     291 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
                      S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran  45 vkrgakvlDvagGtgDlafklsdsvgekgkvvvlDin 81 
                      v +++++lD+ +Gtg +a++++d+ + + +v ++D++
       KKY16997.1 126 VNSPQRALDLGCGTGIWAIEFADE-NPQAEVYGVDLS 161
                      567899****************98.577899999987 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.9
                      HHHHHHHHHEEEEEEEEEEE CS
  Ubie_methyltran 134 kaLkeayrvlkpGGrlvvle 153
                      + ++++yr   pGG +   e
       KKY16997.1 208 NYIEQIYRHTAPGGYFESHE 227
                      44678999999999886655 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.33
                      S--HHHHHHHHHHTTEEEEEEEEE CS
  Ubie_methyltran 198 fPdqetlkeliedaGfksveyesl 221
                       Pd + +++ +++ Gf  v  +s+
       KKY16997.1 264 APDLDAIATTMREVGFVDVVVKSF 287
                      59**************99987766 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.2e-05     0.072      46      82 ..     128     164 ..     110     189 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.2e-05
  Methyltransf_16  46 sklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                      s++++l+LG GtG+  + +a   p+a+v+  Dl+ ++
       KKY16997.1 128 SPQRALDLGCGTGIWAIEFADENPQAEVYGVDLSPIQ 164
                      67899************************99998865 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.005       6.9      27      43 ..     125     141 ..     114     152 .. 0.85
   2 ?    3.2   0.0     0.038        52      93     129 ..     187     222 ..     171     247 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.005
                 CCS-S-EEEEES-TTSH CS
        TehB  27 kivkpgkvldlgcgqgr 43 
                  + +p ++ldlgcg g 
  KKY16997.1 125 PVNSPQRALDLGCGTGI 141
                 5679**********995 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.038
                 -S-EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEE CS
        TehB  93 derydfilstvvlmfleaeripsiienmqectkvggy 129
                 ++++d+i+s ++ +    + + + ie++ ++t +ggy
  KKY16997.1 187 QDHFDLIFSRLM-ISGSIQNLRNYIEQIYRHTAPGGY 222
                 567888888754.3457789999*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2379.01
//
Query:       KKY16998.1  [L=524]
Description: putative cytochrome p450 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-51  174.4   0.0    4.5e-51  174.0   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.0   0.0   2.5e-55   4.5e-51      11     437 ..      54     479 ..      46     489 .. 0.87

  Alignments for each domain:
  == domain 1  score: 174.0 bits;  conditional E-value: 2.5e-55
                 HCHHHHTT...TCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHH CS
        p450  11 gnllqlgr...keelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptl 106
                 ++ l++ r   +++ h ++ ++ ++ygpi+r+ ++   + + ++ e+++++   ++ + ++++++a+      + +++ +  +n +++ ++R+ +t+  
  KKY16998.1  54 WSNLWYVRavvSGKAHLYMADACRRYGPIVRVGPN---TLITCDEELFRKINSVRSGYQKADYYKAFRFD---AERENILSETNNDRHLNMRKKVTAGY 146
                 34444444455899****************98664...67888899999998877767777644333333...577777777788************** PP

                 TSHSTT.THHHHHHHHHHHHHHHHHCCCCHCS...EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCC CS
        p450 107 tsfgkl.sleelveeeaedlveklrkkagess...elditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkyl 201
                  ++    +le+ ++++    +  l++ a++ +    ld ++ ++ ++ldvi+si++g +f+ ++++k  ++  ++ ++  ++  + ++++   p+l+ l
  KKY16998.1 147 SGK-ENpNLEPDMDSVLWSTIILLKSYASKGAdlkPLDFARTMQFFTLDVITSIALGQPFGFVTNDK--DMYGYIGTMTANF--PAMNFMAAVPILSRL 240
                 *99.66799999999887777777777777777779*************************887774..5999999996655..888999999999999 PP

                 SCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC.....SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH CS
        p450 202 ptkllrklkeavkklkdlldklieerretldsa.....kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPev 295
                 + +++ +      + +++ + +i+   ++l  +     k +r d+++ ++           l++ e+a + l  ++aG+dTt++ l+ ++++++ nP +
  KKY16998.1 241 MRNHWFQRATLPTVKDKIGMGKIKAVSRDLIAHrfgpkKITREDMTQSFVRH--------GLTEGEIADESLLQILAGSDTTATILRTGFIYIVSNPRI 331
                 999999999898888888899*********9999999888888999999988........6************************************** PP

                 HHHHHHHHHHHC.CTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS.CEEETTEEE-TT-EEEEEHHHHHT.-TTTS.SSTTS--GGGGB- CS
        p450 296 qeklreEidevl.gdkreptyddlqklpyldavikEtLRlhpvvplllpRevtk.dvvirgylipkGtevivnlyalhr.dpevf.pnPeeFdpeRFld 390
                  ++l+ E d++  + ++ ++ +   +lpyl+a+ikEtLR+hp++  l pR v+    v ++ ++p Gt++ v+ +alhr + + + p++++F+peR+l+
  KKY16998.1 332 YNRLQSECDSTDvPLNEIISSARALELPYLTACIKETLRYHPAASGLNPRTVPPrGDVYNDQFLPPGTVIGVSSWALHRlNTSAYgPDAHVFRPERWLE 430
                 **********98899999***************************9*****9875788888*****************97889999************* PP

                 TTS..CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEE CS
        p450 391 ekg..nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevel 437
                 ++       ++   l FG G   C+Ger+Ar el+  +  l+++F++ +
  KKY16998.1 431 ASPtqLAAMEKAHELVFGYGQYRCLGERIARIELHKTFFELIRRFDFGF 479
                 *9888555899999*******************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 3183.89
//
Query:       KKY16999.1  [L=539]
Description: putative kinesin light chain 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-16   59.5   2.1    1.7e-09   37.8   0.1    3.4  3  TPR_12    Tetratricopeptide repeat
    4.3e-08   32.8   0.2      2e-06   27.4   0.0    3.0  3  TPR_10    Tetratricopeptide repeat
     0.0026   18.2   1.2       0.24   11.9   0.1    2.8  3  TPR_19    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   15.7   0.0        3.7    7.8   0.0    2.8  2  TPR_7     Tetratricopeptide repeat
      0.087   13.0   0.8         14    6.1   0.2    2.7  2  TPR_2     Tetratricopeptide repeat
        0.6   10.5   1.9         17    5.9   0.1    3.3  3  TPR_8     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   3.3e-05     0.099      23      73 ..     292     341 ..     280     343 .. 0.89
   2 !    6.4   0.0    0.0038        11       8      29 ..     407     428 ..     398     436 .. 0.83
   3 !   37.8   0.1   5.7e-13   1.7e-09       6      68 ..     459     519 ..     454     520 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.3e-05
      TPR_12  23 lellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 + ll++ +++a+ ++ ++h  +a+  rnL +ly+  g +e+A++++ +a++
  KKY16999.1 292 RILLQHIYQMATVIFSEHH-PYAIWARNLLILYDTEGALEAAVARFCDAVE 341
                 6789**********98877.66999999******************99976 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0038
      TPR_12   8 nlaavlrrlgrydeAlelleka 29 
                  la ++  lg+++eA+  +  a
  KKY16999.1 407 GLAGIYESLGQWHEAEIVYSNA 428
                 69*************9988776 PP

  == domain 3  score: 37.8 bits;  conditional E-value: 5.7e-13
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlell 68 
                 +  la+  +++ r++eA +++ekal++a+++lGpdhp t+t+  + + ++ +l+  + A +++
  KKY16999.1 459 M--LAQDIAQQSRFEEASQIFEKALNAATQVLGPDHPSTITIIADFAKCLAELNLDDHAKQMY 519
                 3..99999*********************************************9999999988 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.6   7.8e+03      34      42 .]     342     350 ..     340     350 .. 0.82
   2 ?    1.7   0.0     0.086   2.6e+02       8      22 ..     408     422 ..     407     425 .. 0.92
   3 !   27.4   0.0   6.9e-10     2e-06       8      41 ..     460     493 ..     455     494 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.6
      TPR_10  34 rllGpdHPd 42 
                  +lGpd P+
  KKY16999.1 342 DALGPDDPM 350
                 69****995 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.086
      TPR_10   8 LanalrqrgrydeAe 22 
                 La ++ ++g+++eAe
  KKY16999.1 408 LAGIYESLGQWHEAE 422
                 899***********8 PP

  == domain 3  score: 27.4 bits;  conditional E-value: 6.9e-10
      TPR_10   8 LanalrqrgrydeAealleealairrrllGpdHP 41 
                 La    q+ r++eA +++e+al++  ++lGpdHP
  KKY16999.1 460 LAQDIAQQSRFEEASQIFEKALNAATQVLGPDHP 493
                 7777789**************************9 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.6   1.7e+04       4      19 ..     326     341 ..     325     351 .. 0.71
   2 ?    4.1   0.0     0.023        67      26      52 ..     403     429 ..     384     434 .. 0.80
   3 !   11.9   0.1     8e-05      0.24       3      54 ..     466     525 ..     464     529 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.6
      TPR_19   4 egdyaeAlalleqalq 19 
                 eg +++A+a++  a +
  KKY16999.1 326 EGALEAAVARFCDAVE 341
                 6788888888766654 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.023
      TPR_19  26 earllLAeallalgqldeAealLdalp 52 
                 ++ ++LA ++ +lgq+ eAe + + +p
  KKY16999.1 403 NLSAGLAGIYESLGQWHEAEIVYSNAP 429
                 466799*************97766555 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 8e-05
      TPR_19   3 aegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealLdalpee 54 
                 ++ +++eA +++e+al +         p    + ++ A++l +l+  d A+++ d l e 
  KKY16999.1 466 QQSRFEEASQIFEKALNAatqvlgpdHPSTITIIADFAKCLAELNLDDHAKQMYDVLDER 525
                 67899*********996656678667888999999******************9998775 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0012       3.7       5      22 ..     408     425 ..     405     438 .. 0.90
   2 ?    4.6   0.0     0.013        40      11      29 ..     466     485 ..     458     494 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0012
       TPR_7   5 LarlysrlGdyeeAiely 22 
                 La +y++lG++ eA+ +y
  KKY16999.1 408 LAGIYESLGQWHEAEIVY 425
                 999***********9877 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.013
       TPR_7  11 rlGdyeeAielyeqsL.alt 29 
                 ++ ++eeA +++e++L a t
  KKY16999.1 466 QQSRFEEASQIFEKALnAAT 485
                 799***********886654 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.015        46       7      27 ..     408     428 ..     405     428 .. 0.87
   2 ?    6.1   0.2    0.0048        14       7      29 ..     460     482 ..     458     485 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.015
       TPR_2   7 lGlayyklgdyeeAleafekA 27 
                 l+ +y+ lg++ eA+  +  A
  KKY16999.1 408 LAGIYESLGQWHEAEIVYSNA 428
                 7889**********9998765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0048
       TPR_2   7 lGlayyklgdyeeAleafekAle 29 
                 l++  +++ ++eeA + fekAl 
  KKY16999.1 460 LAQDIAQQSRFEEASQIFEKALN 482
                 566667899************96 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.87   2.6e+03       7      28 ..     319     340 ..     318     341 .. 0.77
   2 ?    1.6   0.0      0.13     4e+02       7      24 ..     408     425 ..     406     428 .. 0.87
   3 ?    5.9   0.1    0.0059        17      15      30 ..     468     483 ..     465     486 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.87
                 HHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekal 28 
                 l  +y++ g +e+A++ +  a+
  KKY16999.1 319 LLILYDTEGALEAAVARFCDAV 340
                 56689*********98666665 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.13
                 HHHHHHHTT-HHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyy 24 
                 l+ iy++lg+ +eA+ +y
  KKY16999.1 408 LAGIYESLGQWHEAEIVY 425
                 788***********9988 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0059
                 T-HHHHHHHHHHHHHH CS
       TPR_8  15 gdyeeAkeyyekalel 30 
                  ++eeA + +ekal +
  KKY16999.1 468 SRFEEASQIFEKALNA 483
                 589**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.52
# Mc/sec: 3126.40
//
Query:       KKY17000.1  [L=466]
Description: putative 26s protease regulatory subunit 6a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-40  139.2   0.0    2.2e-40  138.2   0.0    1.6  1  AAA             ATPase family associated with various cellula
    7.6e-19   67.4   0.3    1.4e-18   66.5   0.3    1.5  1  Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
      1e-09   38.0   0.0    2.9e-09   36.6   0.0    1.8  1  AAA_lid_3       AAA+ lid domain
    6.5e-05   23.0   0.3    0.00028   20.9   0.0    2.2  2  AAA_5           AAA domain (dynein-related subfamily)
    0.00014   22.3   1.4      0.016   15.6   0.0    2.8  3  AAA_16          AAA ATPase domain
    0.00028   20.7   0.0    0.00065   19.5   0.0    1.5  1  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
     0.0012   19.0   0.4     0.0093   16.1   0.0    2.6  2  AAA_2           AAA domain (Cdc48 subfamily)
     0.0013   18.3   0.1       0.04   13.4   0.0    2.3  2  PhoH            PhoH-like protein
     0.0019   18.5   2.2      0.097   12.9   0.0    3.1  3  AAA_22          AAA domain
      0.007   15.6   0.6      0.023   13.9   0.0    2.1  2  DUF815          Protein of unknown function (DUF815)
     0.0082   15.5   0.1      0.023   14.1   0.0    1.7  2  Mg_chelatase    Magnesium chelatase, subunit ChlI
  ------ inclusion threshold ------
      0.015   15.5   0.0      0.039   14.1   0.0    1.8  1  AAA_33          AAA domain
      0.066   13.0   0.1       0.15   11.8   0.1    1.5  1  IstB_IS21       IstB-like ATP binding protein
       0.11   12.2   6.9       0.29   10.9   0.0    2.9  3  AAA_11          AAA domain
       0.15   11.6   0.0       0.46   10.0   0.0    1.9  1  AAA_7           P-loop containing dynein motor region
        4.3    7.8  12.2        0.9    9.9   7.4    2.5  2  CLZ             C-terminal leucine zipper domain of cyclic nu


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.2   0.0   1.9e-43   2.2e-40       2     132 .]     251     383 ..     250     383 .. 0.96

  Alignments for each domain:
  == domain 1  score: 138.2 bits;  conditional E-value: 1.9e-43
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvk 97 
                 l+yGppGtGKTlla+a a +++++fl++ g++l+++++g+++k +r++f+ akeka psi+fiDE+da++++r   ++s ++e +r++ +Ll++ldg+ 
  KKY17000.1 251 LMYGPPGTGKTLLARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKA-PSIIFIDELDAVGTKRfdsEKSGDREVQRTMLELLNQLDGFA 348
                 89*****************************************************9.****************997777889999************** PP

                 TSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETTS CS
         AAA  98 kkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 ++ ++v v++atnr+d ldpallr gR+drkie++l
  KKY17000.1 349 SD-DRVKVLAATNRIDVLDPALLRsGRLDRKIEFPL 383
                 *7.66****************************985 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.3   1.3e-21   1.4e-18       1      57 []     116     192 ..     116     192 .. 0.99

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 1.3e-21
                     EEEEEEE-TT....................SSEEEEE-TTS-EEEEEE-GGGSSST--TTEEEEEETTTTEEEEEE- CS
  Prot_ATP_ID_OB   1 VatVsEvldd....................teraiVktssdeevvvslagavpremLrpgDlVavdkdtgfifEkLP 57 
                     V++V+E+ld                     +++a++kts++++++++l g+v+ e+L+pgDl++v+kd++++++ LP
      KKY17000.1 116 VGNVVELLDLdvekeaaeeganidldatrvGKSAVIKTSTRQTIFLPLIGLVDHEKLKPGDLIGVNKDSYLVLDTLP 192
                     9********9******************************************************************9 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   2.6e-12   2.9e-09       2      42 ..     406     446 ..     405     449 .. 0.95

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 2.6e-12
   AAA_lid_3   2 vdlkeLAerTeGySGADlaalcreAallAlrrgikeitmed 42 
                 v++ eLA+ T+ + GA l+a+c eA++ Alr g+ +i+ e+
  KKY17000.1 406 VNWPELARSTDEFGGAQLKAVCVEAGMIALRKGMSKINHEH 446
                 8999*********************************9998 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       9.2     1e+04      87     100 ..      66      78 ..      57      96 .. 0.57
   2 !   20.9   0.0   2.5e-07   0.00028       3     136 ..     251     371 ..     249     372 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 9.2
                 HHHHSSEEE..-SS CS
       AAA_5  87 slleerrllleegg 100
                  ++++rrll e+  
  KKY17000.1  66 DIINRRRLL-ENEL 78 
                 455555555.3333 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 2.5e-07
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHH.HHSSEEE..-SS CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlsl.leerrllleegg 100
                 l+ GppGtgK+ la+  aa +n++++  ++++      l++     +g +  +d  +  + + ++i+++DE++ + ++ ++s  s   e +r +le ++
  KKY17000.1 251 LMYGPPGTGKTLLARACAAQTNATFLKLAGPQ------LVQMFI-GDGAKLVRDCFALAKEKAPSIIFIDELDAVGTKRFDSEKSGdREVQRTMLELLN 342
                 899***********************999998......777666.35555555555555555999********99988888877751444555556666 PP

                 SEEE---......-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5 101 elvkaknddllerfrviatanpldrslnelspalrs 136
                 +l ++++dd   r+ v+a++n+ d     l+pal++
  KKY17000.1 343 QLDGFASDD---RVKVLAATNRID----VLDPALLR 371
                 777777764...699999999999....88888765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       5.6   6.3e+03      34      43 ..     144     153 ..     142     159 .. 0.77
   2 !   15.6   0.0   1.4e-05     0.016      17      50 ..     240     273 ..     235     295 .. 0.77
   3 ?    5.0   0.0     0.027        30     121     149 ..     293     325 ..     277     356 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.6
      AAA_16  34 GvGKsslvre 43 
                  vGKs+++++
  KKY17000.1 144 RVGKSAVIKT 153
                 69*****976 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.4e-05
      AAA_16  17 ervrsgrpelvllsGesGvGKsslvrellralek 50 
                 +++    p   l +G++G+GK+ l+r+++ + ++
  KKY17000.1 240 KKIGIKAPKGALMYGPPGTGKTLLARACAAQTNA 273
                 556666788999***************9965443 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.027
      AAA_16 121 ellkrllallsrderplvlvlDdlq.....wade 149
                  l+++++al+++ + p ++++D+l+     ++d+
  KKY17000.1 293 KLVRDCFALAKE-KAPSIIFIDELDavgtkRFDS 325
                 567788889998.778*********777774444 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   5.8e-07   0.00065      36      94 ..     250     316 ..     236     322 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 5.8e-07
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvleka..gdlaalltn...l...eekdvlfideih 94 
                  l+yGpPG Gkt la+  a++ ++++   +gP l +   gd a l+ +   l   ++  ++fide+ 
  KKY17000.1 250 ALMYGPPGTGKTLLARACAAQTNATFLKLAGPQLVQMfiGDGAKLVRDcfaLakeKAPSIIFIDELD 316
                 69******************************99774346666554331112111555799999975 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1         9     1e+04     127     153 ..      83     100 ..      74     113 .. 0.43
   2 !   16.1   0.0   8.3e-06    0.0093       7     104 ..     251     342 ..     247     355 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 9
                 E--TTHHHHTTTS-STTTTSGGG--HH CS
       AAA_2 127 gafgsskisdesrskeeeeekkkeeve 153
                 + f+  + ++++ +         e+++
  KKY17000.1  83 SEFQLLTHEQTAMK---------EKIK 100
                 44444444442222.........2222 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 8.3e-06
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG-------------HHHHHHHHHHH CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqil 103
                 l+ gp g+Gkt+la+a a   ++    ++  +   +l +      + +  +  ++    a+e+   i+++DE+d +  k+  ++     +Vqr +L +l
  KKY17000.1 251 LMYGPPGTGKTLLARACAAQTNA----TFLKLAGPQLVQ----MFIGDGAKLVRDCFALAKEKApsIIFIDELDAVGTKRFDSEKSGDREVQRTMLELL 341
                 688999**********9999995....888888888887....66666677777777777777778************86666667778********99 PP

                 H CS
       AAA_2 104 e 104
                  
  KKY17000.1 342 N 342
                 6 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   3.6e-05      0.04      18      43 ..     246     271 ..     230     276 .. 0.78
   2 ?    2.3   0.0     0.085        96      75     117 ..     332     374 ..     301     379 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.6e-05
                 H-SEEEEE--TTSSTTHHHHHHHHHH CS
        PhoH  18 kndivfaiGpaGtGKtylavalavea 43 
                 + +   + Gp GtGKt+la a+a++ 
  KKY17000.1 246 APKGALMYGPPGTGKTLLARACAAQT 271
                 55566789***************985 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.085
                 ---TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT-- CS
        PhoH  75 kvdpylrplydaLkdllgaekvekllekgkievaplaymRGrT 117
                  v+  +  l ++L+ + ++++v+ l  +++i v++ a +R   
  KKY17000.1 332 EVQRTMLELLNQLDGFASDDRVKVLAATNRIDVLDPALLRSGR 374
                 566778889999**************************99555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       3.4   3.8e+03      14      28 ..     143     157 ..     142     159 .. 0.84
   2 !   12.9   0.0   8.6e-05     0.097       9      30 ..     251     272 ..     245     288 .. 0.82
   3 ?    3.7   0.0      0.06        68      86     125 ..     302     355 ..     281     363 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.4
      AAA_22  14 sGtGKTtllrrlleq 28 
                 + +GK+ ++++ ++q
  KKY17000.1 143 TRVGKSAVIKTSTRQ 157
                 579******998876 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 8.6e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqld 30 
                 + +G++GtGKT+l+r  + q +
  KKY17000.1 251 LMYGPPGTGKTLLARACAAQTN 272
                 569*************999973 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.06
      AAA_22  86 lraravielliiDEaqhlr.....s.........eealeeLrsllnl.srkgvql 125
                 ++++a ++++ iDE + +      s          ++le L +l  + s++ v++
  KKY17000.1 302 AKEKA-PSIIFIDELDAVGtkrfdSeksgdrevqRTMLELLNQLDGFaSDDRVKV 355
                 34444.59*********98766651566777788888888877776665666655 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.3       1.3   1.5e+03     150     180 ..      69      99 ..      67     101 .. 0.85
   2 !   13.9   0.0     2e-05     0.023      25     116 ..     210     315 ..     193     366 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.3
      DUF815 150 NrRhLlpeklsdneeleeeeihaseaveekl 180
                 NrR Ll+++l+  +++ +   h++ a++ek+
  KKY17000.1  69 NRRRLLENELKVMKSEFQLLTHEQTAMKEKI 99 
                 9******999998887777888888999987 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2e-05
      DUF815  25 vklddLvgidkqkealve.......nteqfle.glpa.nnvLLwGarGtGKSslvkallneyaeegLrli..evekedlkelpklve...llrerperf 109
                  + +d+ g+dkq e+lve        + +f + g +a + +L++G  GtGK  l +a+ ++++++ L+l   ++ +  + +  klv+   +l++++   
  KKY17000.1 210 EQYTDVGGLDKQIEELVEaivwpmnQADRFKKiGIKApKGALMYGPPGTGKTLLARACAAQTNATFLKLAgpQLVQMFIGDGAKLVRdcfALAKEKAPS 308
                 55667777777777776522221112345544344552679************************9887533444555555555554222677888889 PP

      DUF815 110 ilfvDDL 116
                 i+f+D L
  KKY17000.1 309 IIFIDEL 315
                 9999988 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.1   4.6e+03      95     122 ..     170     199 ..     161     211 .. 0.69
   2 !   14.1   0.0     2e-05     0.023      16      42 ..     241     267 ..     230     273 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.1
  Mg_chelatase  95 skpkpGe.islahnGvLfLDElp.efkrkv 122
                   +k kpG+ i   +   L+LD lp e++++v
    KKY17000.1 170 EKLKPGDlIGVNKDSYLVLDTLPaEYDSRV 199
                   477899856778889999999974666554 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2e-05
  Mg_chelatase  16 eiaaaGgHnlllvGppGsGKtmlakrl 42 
                   +i +      l++GppG+GKt+la++ 
    KKY17000.1 241 KIGIKAPKGALMYGPPGTGKTLLARAC 267
                   55555566679*************975 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.4e-05     0.039       3      28 ..     251     276 ..     250     344 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.4e-05
      AAA_33   3 llvGlpGsGKstlaerllkklgavll 28 
                 l+ G+pG+GK+ la+  ++++ a++l
  KKY17000.1 251 LMYGPPGTGKTLLARACAAQTNATFL 276
                 799*************9999886665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00013      0.15      47      71 ..     247     271 ..     241     286 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
   IstB_IS21  47 kenivllGpsGvGKshlaialgvea 71 
                  ++ ++ Gp+G+GK+ la a + ++
  KKY17000.1 247 PKGALMYGPPGTGKTLLARACAAQT 271
                 5677899***********9998765 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   5.4      0.97   1.1e+03     122     185 ..      37     110 ..       3     114 .. 0.52
   2 ?   -0.8   0.0      0.98   1.1e+03      69     106 ..     121     157 ..     115     163 .. 0.74
   3 ?   10.9   0.0   0.00026      0.29      16      42 ..     246     272 ..     233     339 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.97
      AAA_11 122 kaqlakeiskeleklakelrafeeeeek......................eklkkskekskskleqerrklkkerkelskeleeae 185
                 +++++++ +k++e++            +                      e+++k ++ + + l++e++++k+++k++ +++e+ +
  KKY17000.1  37 DIEMKDSEEKKKEEE------------DdlidldvlqsstrdiinrrrllENELKVMKSEFQLLTHEQTAMKEKIKDNMDKIENNR 110
                 333333333333333............13444444544446666666666666666666666666666666666666666666655 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.98
      AAA_11  69 ellerllrglldsegekykpkivRvgneeeriseavks 106
                 ell+  +++   +eg++++++  Rvg+++  i++++++
  KKY17000.1 121 ELLDLDVEKEAAEEGANIDLDATRVGKSA-VIKTSTRQ 157
                 44444455777889999***********9.66666654 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00026
      AAA_11  16 eseitliqGPPGtgKTktivellsqll 42 
                  ++ +l+ GPPGtgKT    +  +q +
  KKY17000.1 246 APKGALMYGPPGTGKTLLARACAAQTN 272
                 555689**********88777777764 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00041      0.46      30      58 ..     244     272 ..     234     327 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00041
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkkld 58 
                 +k+ k  l++Gp GtGKt++++ +  + +
  KKY17000.1 244 IKAPKGALMYGPPGTGKTLLARACAAQTN 272
                 6778899*************999777766 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   7.4    0.0008       0.9      12      70 ..      52     108 ..      35     109 .. 0.92
   2 ?   -2.8   0.2       7.5   8.4e+03      14      29 ..     122     138 ..     121     147 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0008
         CLZ  12 dglLDeeaakagaeqkeleekverLessLeaLqtrlarLlaeyessqrkLkqRitkLEk 70 
                 d+l+D ++   ++  +++ ++ + Le++L++++  ++ L  e +++++k+k  + k+E+
  KKY17000.1  52 DDLIDLDV--LQSSTRDIINRRRLLENELKVMKSEFQLLTHEQTAMKEKIKDNMDKIEN 108
                 88999994..67788999999999*********************************98 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 7.5
         CLZ  14 lLDee.aakagaeqkel 29 
                 lLD + +++a +e  ++
  KKY17000.1 122 LLDLDvEKEAAEEGANI 138
                 78888434444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1273  (0.0710023); expected 358.6 (0.02)
Passed bias filter:                      603  (0.0336327); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.80u 0.34s 00:00:01.14 Elapsed: 00:00:00.57
# Mc/sec: 2458.87
//
Query:       KKY17001.1  [L=425]
Description: putative cyclin-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-10   41.9   0.0    2.2e-10   41.1   0.0    1.5  1  Cyclin         Cyclin
    8.8e-06   25.5   0.0    1.5e-05   24.7   0.0    1.4  1  Cyclin_N       Cyclin, N-terminal domain
  ------ inclusion threshold ------
      0.083   12.7   0.0       0.19   11.6   0.0    1.5  1  Sec23_helical  Sec23/Sec24 helical domain


Domain annotation for each model (and alignments):
>> Cyclin  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   3.8e-14   2.2e-10      67     158 ..     149     241 ..      20     244 .. 0.70

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 3.8e-14
                 HHHHHHHHHHTT--HHHHHHHHHHH.HHHHH..H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHTS-HHHHHHHHHHHHHHTT CS
      Cyclin  67 gsylsrlqkfgesaplvllgtliYl.drivkrcvsealvvtsanihRllivallvatKflvDlsysnekfakvggislkELnkLEidFlflvd 158
                 ++y+s++ + + +     +  l Yl +r+    ++      s +++R+l + ll  +Kfl+D   +n  +a+v  i+++ELn++E+d+l+  +
  KKY17001.1 149 RKYVSQILSSTRLPSSTIMLGLFYLaNRMKIMSARDEQPRSSGSVYRMLTTCLLLGSKFLDDNTFQNRSWAEVSSIPVTELNQMELDWLKDFE 241
                 467777777766655544445555526777777888888899**********************************************98665 PP

>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.5e-09   1.5e-05      34     126 ..     148     244 ..     131     245 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2.5e-09
                 HHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CC......CHHHHHHHHHHHHHHHHSSS---HHHHHHHTTTSS-HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N  34 lidwlvevaekfkltpetlflavnyldRflskksvpkd......klqlvgatcLllAaKveeisppkledlvyitdeafteeeilemErliLetLnfdl 126
                 + +++ ++ ++++l ++t++l + yl   ++  s + +       + ++ +tcLll +K+ ++++ + + ++ +  +++  +e+++mE++ L+ +++++
  KKY17001.1 148 YRKYVSQILSSTRLPSSTIMLGLFYLANRMKIMSARDEqprssgSVYRMLTTCLLLGSKFLDDNTFQNRSWAEV--SSIPVTELNQMELDWLKDFEWSI 244
                 556888899999***********9997554433333334556999****************************9..56999****************98 PP

>> Sec23_helical  Sec23/Sec24 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.2e-05      0.19      23      68 ..     131     174 ..     124     182 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.2e-05
                    HHHHHHHHHHHHHHHHHHHHH-------------GGGTTHHHHHHH CS
  Sec23_helical  23 adarealdtslvdllsayrkvgasgsspsqlqlpeslklLPlyila 68 
                    a++ + +++s v ++++yrk++++    s+++lp+s  +L l+ la
     KKY17001.1 131 AEMSQGIVNSNVHVTAQYRKYVSQ--ILSSTRLPSSTIMLGLFYLA 174
                    6788999***************87..99********9999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.51
# Mc/sec: 2502.48
//
Query:       KKY17002.1  [L=526]
Description: putative nuclear localization protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.9e-51  172.2   0.0      1e-50  171.7   0.0    1.3  1  CRC_subunit  Chromatin remodelling complex Rsc7/Swp82 subunit
  ------ inclusion threshold ------
        0.2   12.0   0.8        2.7    8.4   0.0    2.4  2  NADHdh_A3    NADH dehydrogenase 1 alpha subcomplex subunit 3


Domain annotation for each model (and alignments):
>> CRC_subunit  Chromatin remodelling complex Rsc7/Swp82 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.7   0.0   1.2e-54     1e-50       2     135 .]     159     290 ..     158     290 .. 0.98

  Alignments for each domain:
  == domain 1  score: 171.7 bits;  conditional E-value: 1.2e-54
  CRC_subunit   2 ddeykltkedpegekkidknGkLlggreyrvktFtleeregkklyvLstdlarllgfrdsylffkknpqllkllatqeekedLiergllpsslksrqi 99 
                  dde+ l+ +dpege+k+dk G L+ggreyrv+tFt+ +r g++ly+Lst++ar++gfrdsylff+k++ l+k++++++ k+dLi+r+l+p+s+k+r+i
   KKY17002.1 159 DDEVALP-DDPEGETKVDKLGYLKGGREYRVRTFTILGR-GERLYMLSTEPARCIGFRDSYLFFQKHRVLHKIIIDEDAKRDLIDRELIPHSYKGRAI 254
                  7899999.*******************************.********************************************************** PP

  CRC_subunit 100 klvtarsvFlefGariivkGkrvvDDYyeekakeqg 135
                   +vtarsvF+efGarii++G++v+DDY  ++a+e+g
   KKY17002.1 255 GVVTARSVFREFGARIIIGGRHVNDDYNASAAREKG 290
                  ********************************9987 PP

>> NADHdh_A3  NADH dehydrogenase 1 alpha subcomplex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.048   4.3e+02      41      66 ..      12      37 ..       7      45 .. 0.74
   2 ?    8.4   0.0    0.0003       2.7      44      69 ..     140     170 ..     136     181 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.048
   NADHdh_A3 41 katpynypvPvrddgnmpdvpshpqd 66
                 a++ + p+P+ dd    ++  +p++
  KKY17002.1 12 AAASLKVPIPTADDVSDEEMVDAPNS 37
                6889999******9877776655554 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0003
   NADHdh_A3  44 pyn.ypvPvrddgnmpdv....pshpqdpqg 69 
                 py+   vP+  dgnm+dv     + p+dp+g
  KKY17002.1 140 PYHtTQVPIDKDGNMMDViddeVALPDDPEG 170
                 554146************8887444555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.51
# Mc/sec: 3080.60
//
Query:       KKY17003.1  [L=866]
Description: putative serine threonine-protein kinase sck1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-68  229.4   0.0    6.2e-68  229.0   0.0    1.2  1  Pkinase         Protein kinase domain
      4e-30  105.0   0.0    5.2e-30  104.6   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    5.9e-13   49.3   0.5    3.9e-12   46.7   0.5    2.5  1  Pkinase_C       Protein kinase C terminal domain
    9.6e-09   35.0   0.0    1.2e-07   31.3   0.0    2.1  2  Kinase-like     Kinase-like
    4.5e-05   23.7   0.0    0.00025   21.3   0.0    2.1  2  C2              C2 domain
    0.00081   18.4   0.0     0.0014   17.6   0.0    1.4  1  Haspin_kinase   Haspin like kinase domain
     0.0091   15.9   0.0      0.018   15.0   0.0    1.5  1  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.02   14.5   0.1        3.5    7.2   0.1    2.4  2  FTA2            Kinetochore Sim4 complex subunit FTA2
      0.076   12.6   0.1       0.13   11.8   0.1    1.3  1  Choline_kinase  Choline/ethanolamine kinase
        0.2   11.0   0.1       0.34   10.2   0.1    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.0   0.0   3.5e-71   6.2e-68       1     264 []     472     733 ..     472     733 .. 0.92

  Alignments for each domain:
  == domain 1  score: 229.0 bits;  conditional E-value: 3.5e-71
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHS...CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS- CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklk...hpnivrlyevfeekdelylvleyveggeladllerkgsl 95 
                 +++l+ +G+G+fG+V+++++k+tg+i+A+K+++k+ + +kke  ++l E +il ++    +p+iv l+ +f+++++lylv+++++ggel+ +l+++g +
  KKY17003.1 472 FQVLRLIGKGTFGQVFQVRKKDTGRIYAMKVLSKKVIIQKKEvAHTLGERNILVRTAmadSPFIVGLKFSFQTPTDLYLVTDFMSGGELFWHLQKEGRF 570
                 578899********************************999999********98877778*************************************** PP

                 -HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEE.SSSSCSBCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHH CS
     Pkinase  96 seeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlake.lessskltsfvgtseYlAPEvl.keneyskkvDvWslGvilyellt 192
                 +e +ak+++++++ +l++lH++ i++rDlKpeNiL+d +g++ ++DFGl+k  l+++ ++++f+gt eYlAPEvl +e++y+k vD WslGv+++e+ +
  KKY17003.1 571 NEPRAKFYIAELILALKHLHEHDIVYRDLKPENILLDANGHIALCDFGLSKAnLTKNDTTNTFCGTTEYLAPEVLlDEQGYTKMVDFWSLGVLVFEMCC 669
                 **************************************************962455555****************999********************* PP

                 SS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT....HHHHHTSGGG CS
     Pkinase 193 gkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt....aeellqhpyl 264
                 g  pf++e++++ +++++             k+ +  ++ +s e ++++k ll+++p++Rl+    a+el++hp++
  KKY17003.1 670 GWSPFYAEDTQQMYKNIAFG-----------KVRF-PRDALSTEGRNFVKGLLNRNPRHRLGanndAQELMDHPFF 733
                 ******77777755555555...........2333.35678*********************999999******98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6   0.0   2.9e-33   5.2e-30       3     250 ..     474     718 ..     472     727 .. 0.84

  Alignments for each domain:
  == domain 1  score: 104.6 bits;  conditional E-value: 2.9e-33
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS...-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl...khpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  + + +G+G+fG+V++ + k++ +   +kV  K++    +++e ++ l e +i+ ++   + p iv l         l++vt++++gG+L  +L+k+  
   KKY17003.1 474 VLRLIGKGTFGQVFQVRKKDTGRIYAMKVLSKKV--IIQKKEVAHTLGERNILVRTamaDSPFIVGLKFSFQTPTDLYLVTDFMSGGELFWHLQKE-- 567
                  6688***********9999666666666666666..4555666777778888765433788999999999999999******************98.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ftsksDvWsfGvl 194
                   +++  +   +++++  ++++L+++++v rdl   N+Ll+ n ++ ++DfGL+++  +++++  +++     +++apE+l +++ +t+  D Ws Gvl
   KKY17003.1 568 GRFNEPRAKFYIAELILALKHLHEHDIVYRDLKPENILLDANGHIALCDFGLSKANLTKNDT--TNTFCGTTEYLAPEVLLDEQgYTKMVDFWSLGVL 663
                  9999999999999*****************************************98444443..445566789******988777************* PP

                  HHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS- CS
  Pkinase_Tyr 195 lwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRp 250
                  ++E+++ g sp+   +++++++++  gk     +  ++e  +++k  ++++p++R 
   KKY17003.1 664 VFEMCC-GWSPFYAEDTQQMYKNIAFGKVRFPRDALSTEGRNFVKGLLNRNPRHRL 718
                  *****9.*****************88877666677888888888888888888885 PP

>> Pkinase_C  Protein kinase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.5   2.1e-15   3.9e-12       2      46 .]     755     808 ..     754     808 .. 0.97

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 2.1e-15
   Pkinase_C   2 esdeDtsNFDpeFTeedprdtppddm.........pagspltssvqenFrGFtY 46 
                 +s +D+sNFDpeFT++  + ++++           p ++pl++ +q++F+GFt+
  KKY17003.1 755 SSSLDVSNFDPEFTNAMNTSSSLNARaaalaggglPTSTPLSPTMQDAFKGFTF 808
                 7899********************99***************************9 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.09   1.6e+02      16      54 ..     474     512 ..     464     553 .. 0.75
   2 !   31.3   0.0     7e-11   1.2e-07     142     288 .]     572     717 ..     551     717 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.09
  Kinase-like  16 rgellkkgdrsvvfevkdqetgeplavkvfllpseaskk 54 
                  +  l++kg ++ vf+v+ + tg   a+kv + +    kk
   KKY17003.1 474 VLRLIGKGTFGQVFQVRKKDTGRIYAMKVLSKKVIIQKK 512
                  55799*********************9998876644444 PP

  == domain 2  score: 31.3 bits;  conditional E-value: 7e-11
  Kinase-like 142 etiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl.seve..kgfaPpEllgsrggytrknktkmthkldaWql 236
                  e  a+ ++ ++li    +L+++ +v  +++++n+lld +g + l +f+      tk    ++ +    +  pE+l   +g        +t  +d W l
   KKY17003.1 572 EPRAKFYI-AELILALKHLHEHDIVYRDLKPENILLDANGHIALCDFGLSKANLTKNDTtNTFCgtTEYLAPEVLLDEQG--------YTKMVDFWSL 660
                  45577777.7888888*******************************854444444443244444444666677777666........56689***** PP

  Kinase-like 237 GlviyriwclklPl.tlateeakeewkfklck....kipekvkaLlkkfLqlsqedR 288
                  G+ ++ + c   P+  ++t+++ ++  f +++      + + +  +k++L+++ ++R
   KKY17003.1 661 GVLVFEMCCGWSPFyAEDTQQMYKNIAFGKVRfprdALSTEGRNFVKGLLNRNPRHR 717
                  *************94578889999999999984222245555779999999988877 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.4   2.6e+03       2      29 ..     289     311 ..     288     326 .. 0.74
   2 !   21.3   0.0   1.4e-07   0.00025      45     103 .]     385     439 ..     364     439 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.4
                 EEEEEEEEEESSSSSSTTSSCEEEEEEE CS
          C2   2 klevtvieAknLpnkdkkgssdpyvkvs 29 
                  l++++ eA++L +       dpy + +
  KKY17003.1 289 VLTLKIPEARGLRPS-----YDPYFVTT 311
                 69999*******777.....68875544 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 1.4e-07
                 SSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHTTHHHHEEEEH CS
          C2  45 lnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplstllsgeeaegwypl 103
                 ++P+W++  +f+++   + ++ v+++d+d+   ++f+G+v++ l+  +++   e+w+p+
  KKY17003.1 385 TDPQWDHVARFDITG-TQPEIDVSLYDRDS---EKFLGHVRLCLNLSEQNPSLEQWFPV 439
                 36*************.***********999...99**********************96 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   8.1e-07    0.0014     228     261 ..     594     628 ..     461     636 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 8.1e-07
  Haspin_kinase 228 FEHRdLhldniLvdknlnvtlidlklsRle.sseg 261
                       RdL+ +niL+d+n+++ l+d+ ls+++ ++++
     KKY17003.1 594 IVYRDLKPENILLDANGHIALCDFGLSKANlTKND 628
                    446**************************963333 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     1e-05     0.018     101     197 ..     525     621 ..     455     625 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1e-05
                 HHCCHHCH..-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC....HHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 101 flaalhqvd.paalpladflaqdlellrqlesatarllaselld....lleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                 ++ a+ + +    l++++ +++dl+l  +++s   + l   l++      e +++  +a+l   l    ++ ++ +Dl+p N+l+d ++g++ ++ Df+
  KKY17003.1 525 VRTAMADSPfIVGLKFSFQTPTDLYLVTDFMSG--GELFWHLQKegrfN-EPRAKFYIAELILALKHLHEHDIVYRDLKPENILLD-ANGHI-ALCDFG 618
                 555555555555566666666677766666666..44444444433222.2222224444444444468999**************.88998.*****9 PP

                 T-E CS
         APH 195 dag 197
                 +++
  KKY17003.1 619 LSK 621
                 876 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0019       3.5      21      55 ..     469     505 ..     458     532 .. 0.80
   2 ?    4.7   0.0     0.011        20     177     212 ..     578     618 ..     566     620 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0019
        FTA2  21 ekdiefleyLgkglhsiVlkvkirgk..eYALKlFrf 55 
                 ++d++ l ++gkg+ ++V++v+ ++   +YA+K+  +
  KKY17003.1 469 PNDFQVLRLIGKGTFGQVFQVRKKDTgrIYAMKVLSK 505
                 478999***************9986445*****9765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.011
        FTA2 177 qlpkllrdlkklhklgIvvrDlkeenyi...dg..kLvDls 212
                 ++ +l+  lk lh++ Iv rDlk+en++   +g   L+D++
  KKY17003.1 578 YIAELILALKHLHEHDIVYRDLKPENILldaNGhiALCDFG 618
                 56788889******************974333322356665 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   7.4e-05      0.13     150     194 ..     597     639 ..     570     655 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.4e-05
                     S--SGGGEEE.-CTTEEEE--GTT-EEEEHHHHHHHHHHHTTEEH CS
  Choline_kinase 150 nDlqegNillnkeekklvlIDFEYagynyrgfDlanhfiEwagdy 194
                      Dl ++Nill + ++++ l DF  + +n    D  n f+ ++  y
      KKY17003.1 597 RDLKPENILL-DANGHIALCDFGLSKANLTKNDTTNTFCGTTE-Y 639
                     5*********.9***************************8775.4 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00019      0.34     125     174 ..     580     625 ..     551     632 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00019
         Kdo 125 kavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlr 174
                  ++  + + lh+ ++  +dl + nill++++    +i+l D+  ++  l+
  KKY17003.1 580 AELILALKHLHEHDIVYRDLKPENILLDANG----HIALCDFGLSKANLT 625
                 555567899**********************....******987776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.81u 0.37s 00:00:01.18 Elapsed: 00:00:00.56
# Mc/sec: 4682.27
//
Query:       KKY17004.1  [L=1016]
Description: hypothetical protein UCRPC4_g05728 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.074   12.7   0.2       0.15   11.6   0.2    1.4  1  FAD-oxidase_C  FAD linked oxidases, C-terminal domain
        5.3    6.7   7.7         20    4.9   1.1    3.2  3  PRP4           pre-mRNA processing factor 4 (PRP4) like


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   1.7e-05      0.15      24      95 ..     572     642 ..     566     665 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.7e-05
                    HHHHHT---SEEEEE-HHHHHHHHHTS-SS.TTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT-EEEEE CS
  FAD-oxidase_C  24 eiaqagiipaalelmdkkaldlveatkgak.kglpdeeealllvefegddeeeaeeelealveaileatgaad 95 
                    + a++ i+p+  el d++++d+ e+  ++    l+ e++ +ll e++ ++ e+++++++ +v+ il +++ ++
     KKY17004.1 572 RNADHSIQPSGDELSDNNTTDVDEDGHEDLgGELQYEAPTTLLAELQMRK-EQQKQRNR-QVATILPNGMRTT 642
                    557889****************88877777789*****************.66666666.7888888877776 PP

>> PRP4  pre-mRNA processing factor 4 (PRP4) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2      0.37   3.3e+03      22      27 ..     718     723 ..     717     727 .. 0.79
   2 ?    4.7   0.0    0.0025        22      16      27 ..     763     774 ..     763     776 .. 0.94
   3 ?    4.9   1.1    0.0022        20      17      27 ..     812     822 ..     812     823 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.37
        PRP4  22 RreRLr 27 
                 Rr RLr
  KKY17004.1 718 RRSRLR 723
                 788887 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0025
        PRP4  16 GEthadRreRLr 27 
                 GEt a+R +RL+
  KKY17004.1 763 GETLAERINRLK 774
                 9**********9 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0022
        PRP4  17 EthadRreRLr 27 
                 Et a+Rr+RL+
  KKY17004.1 812 ETLAQRRRRLK 822
                 899*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1016 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1033  (0.0576162); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 6632.23
//
Query:       KKY17005.1  [L=729]
Description: putative phd finger domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-07   30.9   0.0    1.5e-05   25.5   0.0    2.6  1  ING           Inhibitor of growth proteins N-terminal histone
    1.3e-05   25.0   8.6    2.1e-05   24.3   8.6    1.4  1  PHD           PHD-finger
  ------ inclusion threshold ------
       0.01   16.0   1.6      0.026   14.7   1.6    1.7  1  zf-HC5HC2H    PHD-like zinc-binding domain
      0.055   13.6   1.4       0.13   12.5   1.4    1.5  1  zf-HC5HC2H_2  PHD-zinc-finger like domain
       0.13   11.9   2.2       0.26   10.9   2.2    1.5  1  PHD_2         PHD-finger
       0.37   11.8   0.1       0.37   11.8   0.1    3.9  4  BHD_2         Rad4 beta-hairpin domain 2


Domain annotation for each model (and alignments):
>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   5.1e-09   1.5e-05       2      96 ..      58     200 ..      57     205 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 5.1e-09
                 HHHHHTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH................................................TS..S-H CS
         ING   2 LedyldsvenLPlelqrnltelreiDakvqellkeidskiekfl................................................kngslqk 52 
                 +++++d++ +LP e +r+ ++l+e+Dak     +++++ ++  l                                                  ++ ++
  KKY17005.1  58 IQHFTDAITALPREYRRHTSLLKEVDAKAWAPEENLQKLLSACLaskppristtalpsaagsttgpldannqasaansvigvqndilsqassLPTDPAN 156
                 579**************************999999999999999999****************************************965542223445 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         ING  53 nekeeelsriqeelkeaqelldeKiqlaqqaldlvdkhlrrLdq 96 
                  ++++ +++++ +l+e++   deK ++++ a + + ++l+r+++
  KKY17005.1 157 FPRRKLFYDLRVTLNELMVTMDEKNHVMNNANEELGRNLQRINT 200
                 56788888*******************************99986 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   8.6   7.1e-09   2.1e-05       1      51 [.     665     713 ..     665     714 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 7.1e-09
                 SBTTTTSTTSTTSCEEEET..TTSC.EEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   1 rCavCkkksdeeeelvqCd..gCkr.wfHqkClkppleseekpegewlCekCke 51 
                 +C  C++     +e++ Cd  +Ckr wfH +C ++++   +  +++w+C++Cke
  KKY17005.1 665 YC-YCQQ--VSYGEMIACDgaDCKReWFHLECAGLDKV--PGRNTKWYCDECKE 713
                 68.9999..679******9545*854**********88..555668******97 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   1.6   8.8e-06     0.026      32      73 ..     659     701 ..     638     716 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.8e-06
  zf-HC5HC2H  32 kerkklkCylCkkkvGaciqCskkkCkk.afHvtCakeaglll 73 
                 +e++ l Cy+ + ++G +i C+ ++Ck+  fH+ Ca  +++  
  KKY17005.1 659 EEEEPLYCYCQQVSYGEMIACDGADCKReWFHLECAGLDKVPG 701
                 566778888666779***********8637*****98777655 PP

>> zf-HC5HC2H_2  PHD-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.4   4.2e-05      0.13      59      93 ..     666     702 ..     650     716 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.2e-05
  zf-HC5HC2H_2  59 llCkkr.kGaciqCskkeCkt.afHvtCalaaglvme 93 
                   ++C++  +G +i C  ++Ck+  fH  Ca   ++  +
    KKY17005.1 666 CYCQQVsYGEMIACDGADCKReWFHLECAGLDKVPGR 702
                   57877769***********86269*****98887655 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.2   8.8e-05      0.26       4      36 .]     676     712 ..     674     712 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.8e-05
       PHD_2   4 llsCd..kCsva.VHasCYGvskesdgee.WlCrrCe 36 
                 ++ Cd   C+   +H +C G+ k +  +  W+C+ C+
  KKY17005.1 676 MIACDgaDCKREwFHLECAGLDKVPGRNTkWYCDECK 712
                 56676666765338*********9987667******5 PP

>> BHD_2  Rad4 beta-hairpin domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   1.4      0.63   1.9e+03      10      45 ..     247     282 ..     242     307 .. 0.75
   2 ?   -2.0   5.3       2.6   7.7e+03       9      39 ..     350     380 ..     348     494 .. 0.80
   3 ?   -3.6   0.2         6   1.8e+04      30      47 ..     509     526 ..     503     530 .. 0.44
   4 ?   11.8   0.1   0.00012      0.37      17      61 ..     615     673 ..     612     674 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.63
       BHD_2  10 GReVkpgelPvKrvksraktarkkredekkeeeeee 45 
                 G  + ++e  ++   +r + +++kr +++++++++ 
  KKY17005.1 247 GLAIMQNETAARSESRREAVRENKRLKAAQHQQQDS 282
                 777888888888888888888888888887444333 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.6
       BHD_2   9 lGReVkpgelPvKrvksraktarkkredekk 39 
                 + R+V ++e P Kr   + +++ ++r+ ++ 
  KKY17005.1 350 MSRQVSQQEAPKKRRAPKDAANTGSRKRAQT 380
                 5699*********999988888887766655 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 6
       BHD_2  30 arkkredekkeeeeeeee 47 
                 +++  e+ k+e e++++e
  KKY17005.1 509 KASHTEKLKREAEDTNSE 526
                 333333444444444444 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 0.00012
       BHD_2  17 elPvKrvks.......raktarkkredekk..............eeeeeeeegevpLYgewQTelY 61 
                  +PvKr ++       +a++a+       +              e++ e+ee+e pLY   Q   Y
  KKY17005.1 615 AQPVKRSHKkgaglaaQAAAAA-------AaraaadktqdgladEDGGEGEEEEEPLYCYCQQVSY 673
                 589*****97777765222222.......2223334477888889999999*******99886666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1174  (0.0654805); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.37s 00:00:01.16 Elapsed: 00:00:00.52
# Mc/sec: 4185.84
//
Query:       KKY17006.1  [L=684]
Description: putative allantoicase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-83  277.4   0.0    1.3e-41  142.0   0.0    2.4  2  Allantoicase  Allantoicase repeat
    8.1e-32  110.5  16.9      1e-31  110.2  16.9    1.1  1  Sfi1          Sfi1 spindle body protein


Domain annotation for each model (and alignments):
>> Allantoicase  Allantoicase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.0   0.0   1.4e-45   1.3e-41       3     144 .]     352     501 ..     351     501 .. 0.93
   2 !  133.0   0.0   8.1e-43   7.2e-39       1     144 []     529     681 ..     529     681 .. 0.84

  Alignments for each domain:
  == domain 1  score: 142.0 bits;  conditional E-value: 1.4e-45
  Allantoicase   3 kvlaasdeffaeaenllkpepar.........gkmgdGWetrRrreegehdwviikLgasgviegvevdtahFkgnappevsvealeleaseeeaee 90 
                   ++l+ sdeffaea nll+p+p +         g+ +dGWetrR++   e+dwv+ikLg  g+ieg+evdta+F+gn+ + ++++a+++  ++++++e
    KKY17006.1 352 SILSNSDEFFAEAVNLLNPGPVKgypgvfiatGAKYDGWETRRHNP-AEYDWVVIKLGCVGIIEGIEVDTAFFTGNYGEYAALDACYS-PDASKDSE 446
                   68999************999999********99************5.56***************************************.57777888 PP

  Allantoicase  91 eaelkseewkellpktklkpdkrhlfkvea.eeklthvrlniyPDGGiarlrvyG 144
                    a+++ + w+ +lp ++++p++r+++k  +  +++thvrl++yPDGG +rlr+yG
    KKY17006.1 447 IAAANFPGWDVVLPPQPCGPSQRQAWKPASsGNHYTHVRLRMYPDGGFSRLRLYG 501
                   9999**********************66532459********************9 PP

  == domain 2  score: 133.0 bits;  conditional E-value: 8.1e-43
  Allantoicase   1 GgkvlaasdeffaeaenllkpepargkmgdGWetrRrreegehdwviikLga.sgviegvevdtahFkgnappevsvealeleaseeeaeeeaelks 96 
                   Gg ++a+sd++f+ ++nll p++++ +mgdGWet+R+r +g+ dwv i+Lg  +  ie+v vdt+ Fkgn+p+ ++ve+l ++  ++ ++ee ++++
    KKY17006.1 529 GGVATACSDQHFGVRSNLLLPGRGK-DMGDGWETKRSRAKGHVDWVTIRLGLpAKSIEKVVVDTKDFKGNFPRLFKVEGLLSD-PSSPRAEEPKADD 623
                   99*****************666666.************999**********83557**************************6.4555556777899 PP

  Allantoicase  97 eewkellp.ktklkpdkrhlf.......kve..a.eeklthvrlniyPDGGiarlrvyG 144
                    +w++l+  +++ k++++ ++       k e  + ++ +thv+l+++PDGG++r+rv+G
    KKY17006.1 624 GSWTDLIIgEQPGKAHTELVYegsqlaqK-EvgEeSKVWTHVKLTMIPDGGVKRIRVFG 681
                   99*98765277778887777788876531.243335599*******************9 PP

>> Sfi1  Sfi1 spindle body protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2  16.9   1.1e-35     1e-31     273     418 ..       3     148 ..       1     151 [. 0.99

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 1.1e-35
        Sfi1 273 erillealykWvleeRlrlfqrireqrlkrevlstlvtntretrtrllqaeeeaeehrkekllrsvlekwreklaeqrereeeAsefyaprlaqeclda 371
                 er+++++lykWvl eR++l+ ri+e+ l ++ l++l++++r+++t+ +q+e++++  r+++  + ++++w  kl++q+e +++A+e++aprl+ e+++a
  KKY17006.1   3 ERVKAQFLYKWVLHERYALMCRIYERGLRTRFLNALLQRLRSRKTQYEQHEKTVSIGRRNHAISCAIKRWSLKLHRQQEDNKIAYEYCAPRLELESITA 101
                 89************************************************************************************************* PP

        Sfi1 372 wkerlqhvqklekwakdarfyflatkaLkkWrkateesrreRrrday 418
                 w+++lq + k ++wakda+fyf a++aLk+W++a++e++++Rr++a 
  KKY17006.1 102 WRSKLQLLCKYDNWAKDAHFYFSANRALKQWSTAAREAQKKRRQTAM 148
                 *********************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 4293.89
//
Query:       KKY17007.1  [L=1079]
Description: putative isoleucyl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.8e-222  738.5   0.0   6.4e-222  738.1   0.0    1.1  1  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)
    5.1e-24   85.0   0.0    1.4e-23   83.5   0.0    1.8  2  Anticodon_1   Anticodon-binding domain of tRNA
    4.4e-16   58.6   0.1    8.9e-06   24.7   0.0    3.9  3  tRNA-synt_1g  tRNA synthetases class I (M)
    0.00032   20.2   0.0     0.0017   17.8   0.0    2.1  2  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  738.1   0.0  1.4e-225  6.4e-222       2     601 ..      12     637 ..      11     638 .. 0.98

  Alignments for each domain:
  == domain 1  score: 738.1 bits;  conditional E-value: 1.4e-225
  tRNA-synt_1   2 lyekWeeedvfkkelekekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgree 99 
                  ++e+W e ++f+++ e +k +k+++++dgPP++tG +H+Gh la+t+kdiv ry +mkG++v++++GwD++Gl+ie++++k  g+++ + +kk+g ++
   KKY17007.1  12 TLERWREINAFQRQIELSKGRKPYTFYDGPPFATGLPHYGHLLASTIKDIVPRYWSMKGHYVERRFGWDTHGLPIEHEIDKAHGISGPEAVKKMGITK 109
                  689*********************************************************************************************** PP

  tRNA-synt_1 100 frekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEv..eykdkkdalihvafpla 195
                  ++e++r ++++ya+e+r+ ++rlG+++Dfd++y+T+d++++e+v++vf++l++kg++yrg k++++st+l+t+ls++E+  +ykd++d+++ v+fpl 
   KKY17007.1 110 YNEECRGIVMRYADEWREFIERLGRWIDFDNDYKTMDPSFMESVWWVFKQLFEKGVVYRGYKVMPFSTALNTPLSNFEAaqNYKDVQDPAVVVTFPLL 207
                  ******************************************************************************999***************** PP

  tRNA-synt_1 196 dkeevklviaTTtPeTllgdtavavnpeldyv.....itkeklilaeallkslvkke.sek.kiled.ergkeLegkevelpl.......vnrkipii 278
                  d+ ++ l ++TTtP+Tl++ t++av+p ++yv     ++++++il+e llk+l+k   + k ki+e+ ++g++++g ++e+++       +++ ++++
   KKY17007.1 208 DDPQTCLLAWTTTPWTLPSHTSLAVHPSFEYVkiydeASGKNYILVEELLKTLYKDPkKAKfKIVERgIKGSSMKGWRYEPLFdyfyeefKDKGFQVV 305
                  *********************************999999****************99555577766438********************99******* PP

  tRNA-synt_1 279 addyvdkeaGtGvVkiaPahdedDyevgkkynl.....evinildedgtlteeaaefeglkvfdarkkvveelkekglllkaekiehsvpfcerskkp 371
                    dyv+ke G G+V+++Pa++e+Dy+v++k ++      ++n++d++g++t e+++f+g++v++a+k+++++lk+ g+l+ +++i+hs+pfc+rs++p
   KKY17007.1 306 CADYVTKEDGVGLVHQSPAFGEEDYNVAMKTGVisdvrLPPNPVDDSGCFTPEVTDFAGQHVKAADKQIIKHLKAAGRLIVDSQIMHSYPFCWRSDTP 403
                  *********************************99998899********************************************************* PP

  tRNA-synt_1 372 iiyrateqWfvrvkeladaalkavekvqfvpks.kekryaswleniqdWciSRqrwWGhriplfvsketeevvvreelkelvagreeeeaekkaleke 468
                  +iyra+++Wfv++ ++  ++l++++k ++vp + kekr+a+w+ n++dW+iSR+r+WG++ipl+ s++  ev+   +++el++ ++  e+e+++l+++
   KKY17007.1 404 LIYRAVSSWFVKIPDIIPSMLDNIDKSYWVPAFvKEKRFANWISNARDWNISRNRYWGTPIPLWASDDLSEVIAIGSVQELKE-LSGYEGEISDLHRD 500
                  ********************************99****************************************99***9999.889999******** PP

  tRNA-synt_1 469 akdkl....kkekgelekdedvlDvWFsSgswpfstlgypeedteelkkffpadmlleGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGr 562
                   +d++    k+++g+l+++++v+D+WF+Sgs+p+++ +yp+e+++++++ fp d+++eG+D++rgW+++l++l+++l+g  Pfk+ +v+g v++e+G+
   KKY17007.1 501 KVDHImipsKNGNGTLKRISEVFDCWFESGSMPYASSHYPFENKDKFHESFPGDFIAEGIDQTRGWFYTLVVLGTHLFGCLPFKNCVVNGHVMAEDGK 598
                  ************************************************************************************************** PP

  tRNA-synt_1 563 KmSKslgNvidpldvikkygadalRltlilsdvgrdinl 601
                  KmSK+l+N++d + vi++ygad+lRl+li+s+v+r+++l
   KKY17007.1 599 KMSKRLKNYPDVSLVIDRYGADSLRLYLINSPVVRAEQL 637
                  ***********************************9886 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.0   3.2e-27   1.4e-23       1     151 [.     692     848 ..     692     849 .. 0.88
   2 ?   -3.3   0.0       1.7   7.7e+03      84     114 ..     868     904 ..     867     920 .. 0.56

  Alignments for each domain:
  == domain 1  score: 83.5 bits;  conditional E-value: 3.2e-27
  Anticodon_1   1 drwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedkra.aqevllevletllrllaPfmPfitEelw....qr.. 91 
                  drwil+ +++lvk v+e ++ yr+++++ +l   + n+  +wy++++++rl++e + +++  a + l+evl t++r laPf+Pfit++++    q+  
   KKY17007.1 692 DRWILASIQSLVKYVNEEMAGYRLYTVVPRLLGAIENTT-NWYIRFNRKRLKGELGVEDTLhALNSLFEVLYTIVRSLAPFIPFITDTIYlrllQHvp 788
                  9********************************877766.*************99988866699**************************66665585 PP

  Anticodon_1  92 eeeelgkk.esimlaewpekaeel.ekeleeeevellkeivkairklrselkikpsselkvv 151
                  e ++ g++ +s++  ++pe  eel +++  e+ v ++++++++ r  r++ +i+ +++lk  
   KKY17007.1 789 E-NMHGQDmRSVHFLPYPEPREELfDDTV-ERRVGRMQRVIELGRISRERRTIGLKTPLKTL 848
                  3.4445556*********95555566666.78*************************98875 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.7
  Anticodon_1  84 itEelwqr......eeeelgkkesimlaewpe.kaeel 114
                  i+Eel  r       ee+++ + s+  a+wp   ++  
   KKY17007.1 868 ICEELNVRdlvlssDEERYNVQYSV-SADWPTlGKKLK 904
                  6777776667776544445555666.788996333222 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0     2e-09   8.9e-06       8     127 ..      42     180 ..      40     188 .. 0.70
   2 !   11.9   0.0   1.5e-05     0.066     167     239 ..     395     468 ..     366     476 .. 0.78
   3 !   16.1   0.0   8.1e-07    0.0036     310     375 ..     581     648 ..     522     658 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2e-09
                   B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHH.TTS-HHH................HHHHHHHHHHHHHHHTT..--- CS
  tRNA-synt_1g   8 pYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAek.egvtpee................lvekvheeikelfkkln..isf 85 
                   p+a+g +H Ghll   + Di+ Ry  ++g+ v    g D+hG pie + +k +g++  e                +v ++ +e +e  ++l+  i f
    KKY17007.1  42 PFATGLPHYGHLLASTIKDIVPRYWSMKGHYVERRFGWDTHGLPIEHEIDKaHGISGPEavkkmgitkyneecrgIVMRYADEWREFIERLGrwIDF 138
                   7899*********99999****************************987552466544400000000000111113444444555555555455888 PP

                   SEEEETTSHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTT CS
  tRNA-synt_1g  86 dkygrttseehkelvqeifkklkekgliyekeieqlycpkde 127
                   d+ ++t + +  e v  +fk+l ekg +y++     ++++ +
    KKY17007.1 139 DNDYKTMDPSFMESVWWVFKQLFEKGVVYRGYKVMPFSTALN 180
                   888888888888888888888888888888877777776655 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.5e-05
                   ..........EEE.EEEEEE-GGGGHHHHHHHH.HH-TTSHHHHHHHH.HHHHT----EE-ESS-SSS-EET..T CS
  tRNA-synt_1g 167 pksaisgskpevketehlffklskfekklkewieeeekeleenvkkivkewlkegLkdlaisrdldwGipvP..g 239
                   p +  s++  +++  +++f k++++   + + i+++        +k   +w+++  +d++isr+  wG p+P   
    KKY17007.1 395 PFCWRSDTPLIYRAVSSWFVKIPDIIPSMLDNIDKSYWVPAFVKEKRFANWISN-ARDWNISRNRYWGTPIPlwA 468
                   678888888899999******************7777556666677789***99.9****************652 PP

  == domain 3  score: 16.1 bits;  conditional E-value: 8.1e-07
                   ---S-EEEE--EEE-.-------------HHHHHHHH-HHHHHHHHHH.HS-TTS-EEE-HHHHHHHH CS
  tRNA-synt_1g 310 klpkkvvaheyltve.gkKlSkSrgvvvkakealerldadllRYylaa.eapekkDldfswedfverv 375
                      k+ v++++++ e gkK+Sk  ++  +++ +++r+ ad lR yl+     + + l f+++ + e v
    KKY17007.1 581 LPFKNCVVNGHVMAEdGKKMSKRLKNYPDVSLVIDRYGADSLRLYLINsPVVRAEQLRFKEAGVKEIV 648
                   4557778888887752799***************************9956777788888887776665 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.8e-07    0.0017     242     298 ..     587     646 ..     576     649 .. 0.82
   2 ?   -1.3   0.0      0.24   1.1e+03      83     151 ..     960    1030 ..     933    1044 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.8e-07
                   EEE--EEET.TBE--TTTT---BHHHHHTTS-HHHHHHHHHSS-T..TS-EEE-HHHHHH CS
  tRNA-synt_1e 242 lhnghlkie.gekmsksLknfitikdvlkkfdprqlRllllsahy..rsqldfkeellee 298
                   + ngh++ e g+kmsk Lkn+  +  v+ ++ +  lRl+l++      +ql fke  ++e
    KKY17007.1 587 VVNGHVMAEdGKKMSKRLKNYPDVSLVIDRYGADSLRLYLINSPVvrAEQLRFKEAGVKE 646
                   5689998853799***************************98653216789999987765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.24
                    HHHHHHHTT----SB--BGGGG..HHHHHHHHHHHHHTTSEEE-TTS-EEE-GGG-TTTTTTTT--HHHHH CS
  tRNA-synt_1e   83 fkkdleaLnvlkptleprvsek..vdeiielvekliekgyaYavsdgdvyfdvskkeeYgklskqnleele 151 
                     ++d + L +l + + p  +++    eii+ v+++ +k    +++d ++ ++v+++++   l+   +++  
    KKY17007.1  960 TNSDNDVLTILDSAIYPELAQEglAREIINRVQRMRKKAGLVPTDDIKMEYHVKSDPDNVGLEDAFKSQSA 1030
                    456777788888888877654322579********999999999999999999998888777776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1079 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.51
# Mc/sec: 6324.93
//
Query:       KKY17008.1  [L=939]
Description: putative intracellular protein transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.3e-100  335.8   0.0   4.8e-100  334.7   0.0    1.6  1  Uso1_p115_head  Uso1 / p115 like vesicle tethering protein, h
    1.9e-18   67.0  29.4    1.9e-18   67.0  29.4    3.4  1  Uso1_p115_C     Uso1 / p115 like vesicle tethering protein, C
    0.00024   21.3  18.6    0.00024   21.3  18.6    2.5  2  Jnk-SapK_ap_N   JNK_SAPK-associated protein-1
     0.0092   14.9  27.9      0.014   14.4  27.9    1.2  1  DUF812          Protein of unknown function (DUF812)
  ------ inclusion threshold ------
      0.048   13.0  46.0      0.041   13.3  44.4    1.7  1  Tropomyosin     Tropomyosin
       0.11   13.0   0.4       0.76   10.3   0.1    2.6  2  3HCDH_RFF       3-hydroxybutyryl-CoA dehydrogenase reduced Ro
       0.24   10.9   6.2        0.7    9.4   0.2    2.7  2  MMS19_N         Dos2-interacting transcription regulator of R
        1.5    8.5   6.3         17    5.1   0.3    2.9  2  Vac_Fusion      Chordopoxvirus multifunctional envelope prote
          2    6.3  17.9        3.1    5.6  17.9    1.3  1  V_ATPase_I      V-type ATPase 116kDa subunit family
        3.9    6.3  43.1        3.6    6.4  25.4    2.3  2  Spc7            Spc7 kinetochore protein
        9.3    6.3  19.3      0.054   13.5   6.1    2.8  2  DUF1664         Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> Uso1_p115_head  Uso1 / p115 like vesicle tethering protein, head region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.7   0.0  2.9e-103  4.8e-100       1     312 []     341     653 ..     341     653 .. 0.93

  Alignments for each domain:
  == domain 1  score: 334.7 bits;  conditional E-value: 2.9e-103
  Uso1_p115_head   1 NaqlQeeFakidv......pdpslpseakaaeklkl...vlvidaLldlaLsaesvqvfdlRvAaleclkayltnneelkleflsraiegykesn 86 
                     Na+lQe+F+++dv      ++p+ + ++ +a+ +     ++vi+aLl+ +L a + + +dlR+Aa+ec+ka++  ++ +++++l+raieg+k ++
      KKY17008.1 341 NASLQEKFGDLDVqnnsklSHPTSKLTNGHASPK-RwpkTNVIEALLNTTLEAAPSSWLDLRLAACECIKAFFAGHSGIRSHVLRRAIEGHKGGS 434
                     899**********776544366633333333333.2367******************************************************** PP

  Uso1_p115_head  87 detssassnllealleldaelaldpykvwFasvillhlleeneeakelarsvklgdeesgeevvsliqtiselLitslraaadaRisigylmLLi 181
                     d+      n+l++l++ d +  +  y+ wFa+v+llhl+ e++eak++a++v++gd+++geevv++iq+++++L   +++a+d+Ri+igylmLL+
      KKY17008.1 435 DS----IPNILTVLIDADGSTPAHIYQKWFAAVLLLHLIFEDHEAKAIALAVSEGDASEGEEVVTCIQALASNLSLFIQKAEDERILIGYLMLLC 525
                     99....***************************************************************************************** PP

  Uso1_p115_head 182 vWlfedpdaVndfLsessnlqsLiqalsqsssedvlvqGLcaflLGviyefstkdspvsRadlhslltkrigrdnyiskiaqlredelfrkfeee 276
                      W fedpdaVndfL+e snlqsL+q  ++  + ++lv GLca+lLG++yefs+kdspv+R+++h++l + +gr++y++++++lr+d ++r+fe+ 
      KKY17008.1 526 GWTFEDPDAVNDFLGEASNLQSLLQCAKTGRAVTPLVPGLCALLLGIVYEFSSKDSPVPRSTIHNILISGLGREQYMDRLKNLRQDLRMRDFEVL 620
                     *********************************************************************************************99 PP

  Uso1_p115_head 277 pklssskddtglpevyfdseFvelfkdnfsriqral 312
                     p+   s   +g + v fd+ Fv++fkdnfsri ra+
      KKY17008.1 621 PQT--SLG-EGDAYVVFDKVFVDFFKDNFSRILRAV 653
                     852..233.6779999******************97 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0  29.4   1.2e-21   1.9e-18       3     126 .]     796     928 ..     794     931 .. 0.81

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 1.2e-21
  Uso1_p115_C   3 aseleseaaslkdeneklkaelqslskalesleqk.........eakkaaesqakeleaenkklekeleklraelkeekekekekqkEldDLLlllgD 91 
                  +s++ +  ++l++  +++ ++lq + ++++++e +         e +++a  + +e+++ +k le ++++l++el++ ++  k  q+EldDLL+++gD
   KKY17008.1 796 KSNVDQLQSELQKTRKDHLQDLQTAHDEYREKEAQlqekvkraeERLEEAVGKLHETQDIIKGLEGQVDTLKKELDKKESARKGVQTELDDLLIVFGD 893
                  566777888888899999999999999999998886655555555555555666666666666666***********88888888************* PP

  Uso1_p115_C  92 leeKvekykarLkelGeevsddedddeddeedeee 126
                  le K++++k+rLk+lGe vs+++d+++d++ed++e
   KKY17008.1 894 LEGKRAQDKKRLKDLGEAVSEGGDETDDEDEDDDE 928
                  *******************9999999998888665 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6  17.8      0.18     3e+02      55     151 ..     673     763 ..     659     768 .. 0.77
   2 !   21.3  18.6   1.5e-07   0.00024      41     144 ..     781     881 ..     776     889 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.18
  Jnk-SapK_ap_N  55 lreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklheretellkklkel 150
                     re +++L++++++++++    + el+    q+e+e+ ++q+  e+ + e  +++    ++++ l+r  e+e +  +e    +++ +++l++++e+
     KKY17008.1 673 SRELVDSLRSQLDDRTSFLTSLQSELLANQRQLEQEKLDHQKTRESSTVELSRVN----QINEALQRNHENELQRLEEAH--STSRNDMLRQHQEQ 762
                    578899*******************************999999998888877777....666666665555544433333..34778888888876 PP

  Jnk-SapK_ap_N 151 v 151
                    +
     KKY17008.1 763 L 763
                    5 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 1.5e-07
  Jnk-SapK_ap_N  41 lasrneeeeaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeyskl 136
                    +a+ +e++eae+ el+ +++qL++e+++ +   k++ ++l+ + d+++e++ +lqekv++ ee+ +e   k+++++d ++ le + + lkke +k+
     KKY17008.1 781 AAKVRERNEAEIVELKSNVDQLQSELQKTR---KDHLQDLQTAHDEYREKEAQLQEKVKRAEERLEEAVGKLHETQDIIKGLEGQVDTLKKELDKK 873
                    56778899****************998865...9999********************************************************999 PP

  Jnk-SapK_ap_N 137 heretell 144
                    ++  + + 
     KKY17008.1 874 ESARKGVQ 881
                    88665554 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4  27.9   8.3e-06     0.014     187     391 ..     672     873 ..     659     913 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.3e-06
      DUF812 187 fykellplvtaqlssraslvpslle...enaaelaaeqeweeeaneqgl.......asr.lteeeykkrkkeklqkrlaeqlrkaalkseeae.ssask 273
                 +++el++++ +ql  r+s ++sl +    n+++l +e+      ++q+         sr  + +e  +r++e+ ++rl+e+       s++   +++++
  KKY17008.1 672 VSRELVDSLRSQLDDRTSFLTSLQSellANQRQLEQEK-----LDHQKTresstveLSRvNQINEALQRNHENELQRLEEAH----STSRNDMlRQHQE 761
                 45668999999999999999998873333333333222.....222222210012323323333333333333333333333....3333333455666 PP

      DUF812 274 sksdlaellsefseksetdslktkgsrfthaeklqftkeelakkaeteeelkkkreeeleelqeqieeleskieeleeeikklessikqveeeleeeke 372
                 + ++++  l++f  ++e++  ++k  + ++ae ++++++      + + el+k r++ l++lq+  +e ++k ++l+e++k+ e++++++  +l e++ 
  KKY17008.1 762 QLRTIDAELKQFAAEKEKK--AAKVRERNEAEIVELKSN----VDQLQSELQKTRKDHLQDLQTAHDEYREKEAQLQEKVKRAEERLEEAVGKLHETQD 854
                 6677777777773333332..233333444444444444....56788899999999999999999999999999999999999999999999999999 PP

      DUF812 373 eneelekevklkkktlell 391
                   + le +v++ kk l+  
  KKY17008.1 855 IIKGLEGQVDTLKKELDKK 873
                 9999999998888877655 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3  44.4   2.5e-05     0.041      16     231 ..     676     888 ..     661     897 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.5e-05
  Tropomyosin  16 rlekakkkleeaekkaekaeaEvaalnrriqlleeelerteerleealekLeeaekaades.erarKvlEnrelkdeekleeleaqlkeakeiaeead 112
                    +++ ++l+  +   ++ ++E  a +r++++   + ++t e ++  l++ ++ ++a + + e+ +  lE+ +  + + +  l +  ++ + i+ e +
   KKY17008.1 676 LVDSLRSQLDDRTSFLTSLQSELLANQRQLEQEKLDHQKTRESSTVELSRVNQINEALQRNhENELQRLEEAHSTSRNDM--LRQHQEQLRTIDAELK 771
                  4567889999999999****************99999********99999988888776665788899998776665544..4555667788999999 PP

  Tropomyosin 113 rkyeEvarklvvvesdLeraeeraeaaeskiveLeeeLkvv.gnnlksLevseekaseredeyeeeirtLeekLkeaeeRaeeAErsvqkLekevdrl 209
                  +  +E ++k + v    er e+ + +  s + +L++eL+ + +  l++L+ +++++ e+e + +e+++  ee+L ea+ +  e    ++ Le +vd+l
   KKY17008.1 772 QFAAEKEKKAAKVR---ERNEAEIVELKSNVDQLQSELQKTrKDHLQDLQTAHDEYREKEAQLQEKVKRAEERLEEAVGKLHETQDIIKGLEGQVDTL 866
                  99999999999887...89999999*************7661678***************************************************** PP

  Tropomyosin 210 edeleaekekykaiseeLdqtl 231
                   +el+++ + +k ++ eLd+ l
   KKY17008.1 867 KKELDKKESARKGVQTELDDLL 888
                  *******************865 PP

>> 3HCDH_RFF  3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.7   2.8e+03       9      26 ..     104     121 ..     101     129 .. 0.82
   2 ?   10.3   0.1   0.00047      0.76       5      62 ..     448     504 ..     444     507 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.7
   3HCDH_RFF   9 AtqraaeegrpvvlfDla 26 
                 A +++ ++ + vvl+Dl 
  KKY17008.1 104 ADEFSMRQDNIVVLLDLL 121
                 77888887799*****95 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00047
   3HCDH_RFF   5 dGrtAtqraaeegrpvvlfDlaldyraatrlAlAaaaqaspqalaqavalLqalGkkv 62 
                 dG t +  +++  ++v l+ l+++  +a+++AlA+++  ++++ +++v+++qal  ++
  KKY17008.1 448 DGSTPAHIYQKWFAAVLLLHLIFEDHEAKAIALAVSE-GDASEGEEVVTCIQALASNL 504
                 777777777776689999*******************.5566689*******998765 PP

>> MMS19_N  Dos2-interacting transcription regulator of RNA-Pol-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2   0.00043       0.7      14      93 ..      33     111 ..      19     193 .. 0.84
   2 ?    3.4   1.4     0.031        50      85     118 ..     795     829 ..     679     848 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00043
     MMS19_N  14 kvRakavslLaevlsrlpkkklseeevevLvqFflsrledfavlkealkgllaLlrlkkfsaeeavevlralfeevhvqs 93 
                 + R+ +++ L ++++++p+ ++ + +++ L++ +    +d +++k +l+ ll L++ ++ sae  +e++  l +e+++++
  KKY17008.1  33 EDRRASILGLRSFAKQYPA-SVASGALRELITSLSRDADDPDTVKVVLETLLMLFSPDTNSAEASEEIALWLADEFSMRQ 111
                 568889999*********8.899*************************************************99999887 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.031
     MMS19_N  85 lfeevh.vqslaqadRklvyelldallekhrealk 118
                 l ++v+ +qs +q++Rk  ++ l+++ +++re+  
  KKY17008.1 795 LKSNVDqLQSELQKTRKDHLQDLQTAHDEYREKEA 829
                 44555546666666666666666666655544433 PP

>> Vac_Fusion  Chordopoxvirus multifunctional envelope protein A27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   1.2     0.012        20      23      45 ..     734     756 ..     720     760 .. 0.84
   2 ?    5.1   0.3     0.011        17       4      44 ..     830     870 ..     827     873 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHH-XXXXXXXXXX CS
  Vac_Fusion  23 ckrvnealkRlEnHleTlRkaml 45 
                 ++ +++ l+RlE    T R  ml
  KKY17008.1 734 QRNHENELQRLEEAHSTSRNDML 756
                 68899********99*****998 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-XXXXXXXXX CS
  Vac_Fusion   4 dleerllvlekdfqlvikcckrvnealkRlEnHleTlRkam 44 
                 +l e++ + e+  ++ + +  ++++++k lE  ++Tl k +
  KKY17008.1 830 QLQEKVKRAEERLEEAVGKLHETQDIIKGLEGQVDTLKKEL 870
                 5788999999999************************9975 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  17.9    0.0019       3.1       7     132 ..     719     855 ..     714     905 .. 0.61

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0019
  V_ATPase_I   7 glvqfrDlnedvnafqrkfvkevrrcdemerklr..fleeeieklekavikeeea.......eesleapeekeldeleeelekleeelkelne.nlekl 95 
                 ++v++  +n+  +a+qr++ +e++r++e + + r  +l+++ e+l+++ ++ ++        +++ ++++e+e+ el++++++l++el+++++ +l++l
  KKY17008.1 719 STVELSRVNQINEALQRNHENELQRLEEAHSTSRndMLRQHQEQLRTIDAELKQFaaekekkAAKVRERNEAEIVELKSNVDQLQSELQKTRKdHLQDL 817
                 678999999*9*****************97654422455554444444444443344455546666777777888888888888888877654156778 PP

  V_ATPase_I  96 kkelnelvelkavlekakefleee.eeeeeeeeseeee 132
                 ++ + e  e++a l++  +  ee+ ee   + +++++ 
  KKY17008.1 818 QTAHDEYREKEAQLQEKVKRAEERlEEAVGKLHETQDI 855
                 88888888777777666655555533333332222222 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  25.4    0.0022       3.6     133     255 ..     687     811 ..     684     813 .. 0.88
   2 ?    5.5  14.4    0.0041       6.7     164     257 ..     798     891 ..     795     922 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0022
        Spc7 133 RmqllegLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles.idkeeLeelreelaelkaeieekkkelaelqeql. 229
                 R+  l +L+++l  n  +le++k   +k +e  +  l ++++  ++l++++e++ ++ ee  s + ++ L++ +e+l++++ae++++ +e +++ +++ 
  KKY17008.1 687 RTSFLTSLQSELLANQRQLEQEKLDHQKTRESSTVELSRVNQINEALQRNHENELQRLEEAHStSRNDMLRQHQEQLRTIDAELKQFAAEKEKKAAKVr 785
                 7889999******************************************999887776666662669*********************99999888861 PP

        Spc7 230 eeleekieelkeqkseleeeiaeaer 255
                 e+ e++i elk++ ++l++e+++ ++
  KKY17008.1 786 ERNEAEIVELKSNVDQLQSELQKTRK 811
                 5567899*************998765 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0041
        Spc7 164 eldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervl 257
                 ++d+l  el++ +++  + l++  ++++e e+  +e+++ + e+l+e+  +++e ++ ++ l+ q+++l++++++ ++ ++ +++e+     v 
  KKY17008.1 798 NVDQLQSELQKTRKDHLQDLQTAHDEYREKEAQLQEKVKRAEERLEEAVGKLHETQDIIKGLEGQVDTLKKELDKKESARKGVQTELDDLLIVF 891
                 4444445555555544455555555556655666777777777777777777777777777777777777777777777777666666554444 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   5.4       3.6   5.8e+03      47      98 ..     681     735 ..     670     786 .. 0.50
   2 ?   13.5   6.1   3.3e-05     0.054      45     122 ..     794     868 ..     784     870 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.6
     DUF1664  47 skqleqvseslaatkrhLssridrvd.kkldeqkeiskeik..eevtevredlse 98 
                  +ql++  + l++ + +L ++  +++ +kld+qk   +++   + v++++e l++
  KKY17008.1 681 RSQLDDRTSFLTSLQSELLANQRQLEqEKLDHQKTRESSTVelSRVNQINEALQR 735
                 4444444444444444444444444312344444333333211234444444432 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3.3e-05
     DUF1664  45 svskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                 ++ ++++q++++l++t+++   +++ +++  de  e  ++++e+v++++e l+e   ++++ +++++gle++++++++
  KKY17008.1 794 ELKSNVDQLQSELQKTRKD---HLQDLQTAHDEYREKEAQLQEKVKRAEERLEEAVGKLHETQDIIKGLEGQVDTLKK 868
                 567899**********986...5566777889999999***********************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (939 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2403  (0.134029); expected 358.6 (0.02)
Passed bias filter:                      660  (0.0368119); expected 358.6 (0.02)
Passed Vit filter:                       132  (0.00736237); expected 17.9 (0.001)
Passed Fwd filter:                        50  (0.00278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.34u 0.35s 00:00:01.69 Elapsed: 00:00:00.56
# Mc/sec: 5045.94
//
Query:       KKY17009.1  [L=2266]
Description: putative wd repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.4e-246  819.9   6.8   7.6e-245  814.2   6.8    2.3  1  Rav1p_C        RAVE protein 1 C terminal
   8.1e-147  489.7   4.4   1.4e-146  489.0   0.1    2.6  2  XRN_M          Xrn1 helical domain
    1.4e-97  325.9   1.3    2.7e-97  324.9   0.0    2.0  2  XRN_N          XRN 5'-3' exonuclease N-terminus
  ------ inclusion threshold ------
       0.11   12.2   0.1        0.3   10.8   0.1    1.7  1  Baculo_LEF5_C  Baculoviridae late expression factor 5 C-termi
       0.65   10.2   2.3        1.5    9.0   2.3    1.7  1  zf-CCHC        Zinc knuckle


Domain annotation for each model (and alignments):
>> Rav1p_C  RAVE protein 1 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  814.2   6.8  2.1e-248  7.6e-245       1     638 []    1538    2163 ..    1538    2163 .. 0.95

  Alignments for each domain:
  == domain 1  score: 814.2 bits;  conditional E-value: 2.1e-248
     Rav1p_C    1 glletwkakvdkekkklewletseletgieepslisgsslkkvavvdesrseLsiwdlksgvleyeeefeeedsikdldwtstpdsqsilavgFekk 97  
                  g++ t+++kvd +++k++wl t++++tgi++psl+sgs ++kva+vd ++++L+iwd+++g+leyee+f++ + i+dldw+stpd+qs+lavgF+++
  KKY17009.1 1538 GKVWTLTSKVDAHNRKVDWLITCTIDTGIRNPSLASGSLIRKVALVDAKKTTLTIWDTTGGQLEYEEQFSDVEIIQDLDWASTPDNQSVLAVGFPHR 1634
                  5677899****************************************************************************************** PP

     Rav1p_C   98 vllltqlRydylnkgpswaairkidireltpheigdsiWlkdgtLvvaaGnqlfikdkklelelk.kksessikskkeksvdlfelvselngpLpvy 193 
                  vlll+qlRydyln+g +w+a+r+i+i++ltph+igds+Wl++g+Lv++aGnq+f++d++++++ +  +  +  +++ + s+ lfe            
  KKY17009.1 1635 VLLLSQLRYDYLNAGAAWTAVREIRIKDLTPHPIGDSCWLDNGHLVIGAGNQIFVYDQEMHMNDRlVERLRLPGRR-KASKRLFE------------ 1718
                  **************************************************************54432223333333.33555555............ PP

     Rav1p_C  194 HPqfLiqlilagklelvkeillkLfkklkflsedeeldsllelelekflkedekkkskkkeaeslaeeekeeeeeevevfdeevaksLaekLkkikl 290 
                         +il gk++lv++il++L++klkf+se+++lds+l+l++e f++e + +++++ +   l++++ +++++e++ ++ee a  L+++L++++l
  KKY17009.1 1719 ------VCILYGKSSLVQKILITLHHKLKFWSEGDDLDSFLDLPIEIFIDEADGTSATRIKDLMLSHKTFDDDSNESSFLTEESALVLNDNLSRKTL 1809
                  ......49*******************************************99999444444457778888999999******************** PP

     Rav1p_C  291 pqLtrheqitLvnvveaveevekerrslDenglrfllglklfllrkkee..eqkelslRdiswAlhSdsqeiLldlverqlknkllWeaarelglfm 385 
                  p Lt++eq+ L+++ve+v++vek++rs+Den++r+++++++++lr++++  + ke+s+R+i+wA+hS+sq+i++d+++r+l++k++W++ar++g+fm
  KKY17009.1 1810 PDLTSQEQFLLADIVECVATVEKQKRSMDENAARYMVFFRQQTLRHNSDrdDVKEVSWREIVWAFHSNSQDIIIDMISRHLSGKITWQHARRTGIFM 1906
                  ********************************************98876668899****************************************** PP

     Rav1p_C  386 WlkdsealrkqfeeiArneytkseerdPvkcslfYlALkKkqvlqgLWriaswhkEqkktlkfLsndFseprwktaAlKNAfaLlskrRyeyAAaFF 482 
                   l d++al+ ++e++Arneytk+++r Pv+cs+fYlAL+Kk+vl gLWr+a++ kEq++t+k+L+n+F+eprwktaAlKNA+aLlskrR++yAAaFF
  KKY17009.1 1907 FLADNTALKMHLETVARNEYTKNDDRSPVDCSIFYLALGKKTVLSGLWRMAQGYKEQQATMKLLANNFNEPRWKTAALKNAYALLSKRRFQYAAAFF 2003
                  ************************************************************************************************* PP

     Rav1p_C  483 LLadslkdavnvllkqlkdlqLAiavarvyegddgpvLkelleeevLpeAvkegdrWlaswafwmlkrrdlavraLvtpleelleekkkeeakse.. 577 
                  LL++sl davnv+++ql d+qLAiavar yegd+gpvL++ll ++vLpeA ++g+rWlaswafwml+rrd+avr+L++p+++ll+ ++  +++s+  
  KKY17009.1 2004 LLGGSLVDAVNVCVHQLGDIQLAIAVARAYEGDEGPVLRNLLLDKVLPEANQSGNRWLASWAFWMLNRRDKAVRSLISPIHSLLDPESVFNVASHni 2100
                  *************************************************************************************994444333347 PP

     Rav1p_C  578 ..ksksflkdDPalvlLYkqLrkkslqtlkgalkvsekeeyefvlrvarlydrmGcdllaLsL 638 
                    ++ks+l++DPalv+LY+qLr+k+lq lkga+ ++++ee+ef++++arl++rmGcdllaL+L
  KKY17009.1 2101 plQAKSYLANDPALVVLYQQLRQKTLQALKGATMIDPREEWEFIVHNARLLTRMGCDLLALDL 2163
                  89***********************************************************98 PP

>> XRN_M  Xrn1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   1.4       1.1   3.8e+03      81     129 ..     113     150 ..      88     168 .. 0.43
   2 !  489.0   0.1  3.8e-150  1.4e-146       2     441 ..     333     851 ..     332     853 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.1
       XRN_M  81 rkrkeredrkekklakeeeaskedaaneeaavaeeklseskvaksaeae 129
                 ++r++r +++++            ++++e++ + +kl +++ +++ e +
  KKY17009.1 113 QQRARRFRAAKDA-----------QEADEKKEEFNKLLQRQQSQNGESQ 150
                 2222222222222...........2222222222222222222222222 PP

  == domain 2  score: 489.0 bits;  conditional E-value: 3.8e-150
       XRN_M   2 fdleriiDDfvFlcFFvGNDFLPhlPsLeiregaidlllkvYkkelkklggyltdngevkldrveklvslvgkveekifrkrkeredrkekklakeeea 100
                 fdler+iDD+vF+cFFvGNDFLPhlPsL+i+eg id l+ ++++ ++++ggylt +g ++l +++++++ ++k e++ifr+rke  dr+e+++++++++
  KKY17009.1 333 FDLERAIDDWVFMCFFVGNDFLPHLPSLNIHEGGIDTLIAIWRDNIPSMGGYLTCDGSIELPKAQVILQGLAKQEDAIFRRRKESDDRAERNKQRRKQE 431
                 89************************************************************************************9999988888777 PP

       XRN_M 101 skedaaneeaavaeeklseskvak........................................................................... 124
                 +++ ++n+++ +  ++   +                                                                               
  KKY17009.1 432 EEARNKNNKRHRRGSPDYANGAPAmkgraddrapshlnlmpaenlsvtysmvvnpgsadranaanksaaavlkerlmkknseedqlqaiptsstvstet 530
                 76666665555544443332222245899*******************************************************************998 PP

       XRN_M 125 ....saeaeaeaeaeaeaeakaekekrekaekeleeseeeeeeeDkvrLgeeGykeRYYkekfevsseeieqrrevvqkYveGLcWvlrYYyqGvaSWk 219
                     s++ ++++    e  +++  + +  a+ ++e++ e+e +eD+vrL+e+Gy +RYY++kf+vs+++ie+r++v+++YveGLcW + YY+qG++SW+
  KKY17009.1 531 pvtpSSASKKRKLDIDEDDNDTPGRDTPIAKGAVESKPESEVPEDTVRLWEPGYADRYYEQKFKVSPDDIEFRHKVARAYVEGLCWATLYYFQGCPSWT 629
                 8775333333333334444555556666777788888899999******************************************************** PP

       XRN_M 220 WfyPyhyaPFaSDlknladlkikFekgspfkpleqLmavlPaaskkalPkayqkLmtdpdSpiidlypedfeidlnGkrvaWqgvaklPfidekrLlea 318
                 W+yPyhyaPFa D+++++++++kFe g+pfkp eqLm+vlPaas++a+P a++ Lmt+p+S+iid+ypedfe+d nG +  W++v++lPfidekrLl+a
  KKY17009.1 630 WYYPYHYAPFAADFVDIDKMEVKFETGTPFKPYEQLMGVLPAASNHAIPPAFHPLMTEPNSEIIDFYPEDFELDANGAKQPWKAVVLLPFIDEKRLLDA 728
                 *************************************************************************************************** PP

       XRN_M 319 lakleeeLteeEkkRNtrksdvlfvsktskkaeallaklsekekdeeklkideklseglngslalaeeavvekklssplk..elediednkvlcvkyel 415
                 +a+ ++eLt++E++RN r++dvl++s+t++++e++ +++++k++ + k++++   +  l+g +  +e+++ ++ l++pl+  +l+++ d++ ++v+ye 
  KKY17009.1 729 MATKYPELTADEHERNARGKDVLLISETHPLYEEIKNNFYSKKQGQPKMTLKMG-IGHLAGKVERNESFLPHSSLMPPLDdiDLPQVDDDRSMSVHYEM 826
                 *******************************************88988888855.899*********************99999*************** PP

       XRN_M 416 Pkkddyvhiaellpgvvlpekvlkee 441
                 P+  + vh++ ll gv++p+  l ++
  KKY17009.1 827 PPALH-VHKSMLLRGVKIPHTLLDKS 851
                 ***66.*************9998765 PP

>> XRN_N  XRN 5'-3' exonuclease N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.9   0.0  7.6e-101   2.7e-97       1     241 [.       1     260 [.       1     261 [. 0.90
   2 ?   -1.6   0.8      0.42   1.5e+03     105     136 ..     410     441 ..     402     508 .. 0.65

  Alignments for each domain:
  == domain 1  score: 324.9 bits;  conditional E-value: 7.6e-101
                 XXX-HHHHHHHHHSGGGEEE---................---SSSS-EEEEEEETHHHHHHHHS-SSS-......--SSHHHHHHHHHHHHHHHHHHH- CS
       XRN_N   1 mGvpklfrwlserypkivkevie................eeeeeekefdnLYlDmNgiihkcshkedkeekelskkpkteeeifkkifkyidrlvkivr 83 
                 mGvp+lfrwls++ypkiv+ vie                + +++++e+dnLYlD+Ngi+h+c+h+edk        p+te+e++++if+y +r+v+++r
  KKY17009.1   1 MGVPALFRWLSKKYPKIVSAVIEehphevdgvqhpvditKPNPNGEETDNLYLDFNGIVHPCTHPEDK------PPPATESEMMTDIFTYTERVVRMAR 93 
                 9*********************977766666665555544448888*******************554......599********************** PP

                 EEEEEEEE------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-BB-.........-------GGGSSTTSHHHHHHHHHHHHHHHHHHHH- CS
       XRN_N  84 prkllylavDGvaPraKmnqqRsRRfrsakeakeekeekeelkeelekeekeee.........eeeekfdsnvitpGtefmeklsealkafikkklked 173
                 prk+l++avDGvaPraKmnqqR+RRfr+ak+a+e++e+kee ++ l+++++++          + ++++d+n+itpGt+fm+ l+ +l+++++ kl++d
  KKY17009.1  94 PRKVLMIAVDGVAPRAKMNQQRARRFRAAKDAQEADEKKEEFNKLLQRQQSQNGesqesfeeaVIKKTWDTNQITPGTPFMNVLALSLRYWVQWKLNTD 192
                 **********************************9775555555444444433345567777799********************************** PP

                 GGGGG-EEEEE-TTS-S-HHHHHHHHHHHHHTSTTS-TT-EEEEE---THHHHHHHHHT-SSEEEEEE CS
       XRN_N 174 pawknlkvilsdaevpGEGEhKimefirkqrskpeydpntrhviyglDaDLillsLathepniliLre 241
                 paw++lkvi+sda+vpGEGEhKim+f+r+qr++pey+pnt+hviyglDaDLi+l+Lathep++++Lre
  KKY17009.1 193 PAWEKLKVIISDATVPGEGEHKIMSFVRSQRTDPEYNPNTTHVIYGLDADLIMLGLATHEPYFKVLRE 260
                 *******************************************************************9 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.42
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-BB CS
       XRN_N 105 RsRRfrsakeakeekeekeelkeelekeekee 136
                   RR +++ +++e+++++++++ee++++++++
  KKY17009.1 410 IFRRRKESDDRAERNKQRRKQEEEARNKNNKR 441
                 44666655555555554444444444443333 PP

>> Baculo_LEF5_C  Baculoviridae late expression factor 5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   8.4e-05       0.3      18      31 ..    1827    1841 ..    1821    1846 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.4e-05
  Baculo_LEF5_C   18 v.tiEiQnRagDEiv 31  
                     v t+E+Q R++DE +
     KKY17009.1 1827 VaTVEKQKRSMDENA 1841
                     56***********76 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.3   0.00042       1.5       2      16 ..     271     285 ..     270     286 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00042
                 CTSSSSSSSSTTTTS CS
     zf-CCHC   2 kCynCGepGHiardC 16 
                 kC  CG+ GH+a  C
  KKY17009.1 271 KCKLCGQQGHRAEAC 285
                 8***********999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       957  (0.0533772); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.26u 0.38s 00:00:01.64 Elapsed: 00:00:00.58
# Mc/sec: 11726.39
//
Query:       KKY17010.1  [L=512]
Description: putative mate efflux family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-59  198.0  14.1    8.8e-30  103.5   5.3    2.3  2  MatE             MatE
    0.00021   21.3   9.2    0.00021   21.3   9.2    3.6  4  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai


Domain annotation for each model (and alignments):
>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   1.5   1.6e-32   1.4e-28       1     160 [.      62     222 ..      62     223 .. 0.98
   2 !  103.5   5.3   9.8e-34   8.8e-30       6     160 ..     288     443 ..     285     444 .. 0.97

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 1.6e-32
        MatE   1 PialenllesllslidtllvgrlgskalAavsialsilsllfv.fllglstalttlvgqal.Gaknfkrakealrqglilllllsliiallvllfseqi 97 
                 P++l++ l+++l++i++l+vgr ++++lA ++++ ++++ + + ++lg  tal+tl++ a+ G+ n++++++ l++ +++l+l ++++++l +++se++
  KKY17010.1  62 PVVLAYSLQNSLQTISVLIVGRASPEDLATAAFSYMFAMCTAWlIGLGGTTALDTLASSAFtGSTNKHDLGVLLQRNFVVLTLYYIPVCIL-WACSEPL 159
                 99******************************************************987655*****************************.******* PP

        MatE  98 lslftqdeevlelakrylrililgipalalqlvlsgilrgagktkvplyislislllniplny 160
                 ++ ++qd++++  ++++l +li+g +++++++  +++l++++++++++y++li++++ + lny
  KKY17010.1 160 FKALGQDPDLSRDSAKFLTLLIPGGLGYIYFESMKKYLQAQEIMRPGTYVLLITSPISAGLNY 222
                 *********************************************************999998 PP

  == domain 2  score: 103.5 bits;  conditional E-value: 9.8e-34
        MatE   6 nllesllslidtllvgrlgskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqilslftqd 104
                 + +e++ + i+ l +grlg+  lAa s+ ++  +++ ++++g+++a++++vg+ lGa+n k+a+++++++ +l+++l++++ ++++  +++++++f++d
  KKY17010.1 288 VGTEWWAFEIVALAAGRLGTIPLAAQSVIMTADQVMNTIPFGVGVAASARVGNMLGARNAKGASRSANTSAWLSMFLGALVLAVLMGTRNHFAKIFNND 386
                 5689*********************************************************************************************** PP

        MatE 105 eevlelakrylrililgipalalqlvlsgilrgagktkvplyislisl.llniplny 160
                 ++v++l+++ l++++l+++a++l+  + g lrg+g+++++++++++s+  + +pl+ 
  KKY17010.1 387 PAVVKLTAEVLPYVALFQIADGLNGSCGGSLRGMGRQHIGAAVNIVSYyCIALPLGI 443
                 ***************************************************999986 PP

>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.17   1.5e+03       8      28 ..      91     111 ..      89     126 .. 0.80
   2 !   21.3   9.2   2.4e-08   0.00021       2     119 ..     177     294 ..     176     319 .. 0.77
   3 ?   -1.3   0.1      0.24   2.1e+03     122     137 ..     357     372 ..     321     384 .. 0.62
   4 !    4.8   2.5    0.0029        26       2      70 ..     397     467 ..     396     478 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.17
  Polysacc_synt_C   8 siiflslstvlssiLqglgrq 28 
                      ++ f++++ ++++ L+glg +
       KKY17010.1  91 TAAFSYMFAMCTAWLIGLGGT 111
                      567888888888888888855 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 2.4e-08
  Polysacc_synt_C   2 LailalsiiflslstvlssiLqglgrqkialkalvigalvklilnllli..plfgivGaaiatvlallvvavlnlyalrrllgikl..ellrrl 91 
                      L +l+++ + + ++  +  +Lq+    +  +++l+i+  +  +ln+ l     +g+ Ga iat +a+ ++++l++ ++r + g+     + +++
       KKY17010.1 177 LTLLIPGGLGYIYFESMKKYLQAQEIMRPGTYVLLITSPISAGLNYALCytAGMGLWGAPIATGIAYWLSFLLLVLYARFIAGFECwgGWSKKC 270
                      6788888889999999999******************************5556678*****************************988667777 PP

  Polysacc_synt_C  92 lkpllaalvmgivvylllllllglllla 119
                      + +l + + ++i+  ++ ++     ++a
       KKY17010.1 271 FEHLGIFARLSIL--GVIHVGT--EWWA 294
                      6554444444444..2223222..2222 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.24
  Polysacc_synt_C 122 alllavlvgalvYlll 137
                      +  l++++galv ++l
       KKY17010.1 357 SAWLSMFLGALVLAVL 372
                      3344444444443333 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.0029
  Polysacc_synt_C   2 LailalsiiflslstvlssiLqglgrqki.alkalvigalvklilnllli.plfgivGaaiatvlallvva 70 
                      L ++al  i  +l+  +++ L g+grq+i a++++v   ++ l l ++l  + +g+ G  ++ ++al +v 
       KKY17010.1 397 LPYVALFQIADGLNGSCGGSLRGMGRQHIgAAVNIVSYYCIALPLGIWLAfHGWGLPGLWVGQCIALYLVG 467
                      778889999999****************94455555556799999999998999**999999888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3452.27
//
Query:       KKY17011.1  [L=839]
Description: putative homeobox and c2h2 transcription [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-17   63.5   2.0    4.6e-17   61.6   0.6    2.6  3  Homeobox_KN  Homeobox KN domain
    5.7e-06   26.5   7.9       0.63   10.6   0.5    4.1  3  zf-C2H2      Zinc finger, C2H2 type
    8.7e-05   22.3   0.1    0.00021   21.1   0.1    1.7  1  Homeodomain  Homeodomain
      0.003   17.6   0.2     0.0078   16.2   0.1    1.8  2  HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
  ------ inclusion threshold ------
      0.024   15.5   0.7      0.024   15.5   0.7    4.9  5  zf-C2H2_4    C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> Homeobox_KN  Homeobox KN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.6   1.3e-20   4.6e-17       1      40 []     187     226 ..     187     226 .. 1.00
   2 ?   -1.2   0.1      0.55     2e+03       7      12 ..     284     289 ..     281     290 .. 0.85
   3 ?   -2.6   0.0       1.6   5.6e+03      17      33 ..     486     502 ..     482     502 .. 0.87

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 1.3e-20
  Homeobox_KN   1 WflahlhnPYPseedKeeLlkeTglsvkqitnWFINaRrR 40 
                  W+ ah h+PYP++++K+eL++ Tgl+++qi+nW++NaRrR
   KKY17011.1 187 WLAAHAHHPYPTDQEKDELKHLTGLKRSQISNWLANARRR 226
                  ***************************************9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.55
  Homeobox_KN   7 hnPYPs 12 
                  +nPYP 
   KKY17011.1 284 DNPYPE 289
                  8****5 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.6
  Homeobox_KN  17 eeLlkeTglsvkqitnW 33 
                  ++++ ++g++ +  ++W
   KKY17011.1 486 TSIKSRCGFCPAEFSTW 502
                  7899******9999999 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.5   0.00018      0.63       1      23 []     379     402 ..     379     402 .. 0.96
   2 !   10.4   0.4    0.0002      0.72       8      23 .]     454     470 ..     446     470 .. 0.93
   3 !    7.7   0.0    0.0015       5.4       2      23 .]     491     512 ..     490     512 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00018
                 EEETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                 ++C+ C+ sF  k++  rH ++ H
  KKY17011.1 379 FQCTFCTDSFAAKYDWARHEKSlH 402
                 89*****************99988 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0002
                 EEESSHHHHHHHHHC.C CS
     zf-C2H2   8 ksFkrksnLkrHirt.H 23 
                 ++F rk++L++H+r  H
  KKY17011.1 454 RTFYRKDHLRQHLRLlH 470
                 89************999 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0015
                 EETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                 +C+ C+  F+++ + + H+  H
  KKY17011.1 491 RCGFCPAEFSTWGQRVDHLAAH 512
                 7*****************9877 PP

>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   5.9e-08   0.00021       6      56 ..     175     228 ..     170     229 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 5.9e-08
                  SS-HHHHHHHHHHHH...HSSS-SHHHHHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Homeodomain   6 tftkeqleeLeklFe...enrypsaeereeLAkklgLeerqVkvWFqNrRakek 56 
                  +f+++ +++L++  +    ++yp+ +e+ eL + +gL+ +q+++W  N R + k
   KKY17011.1 175 RFSRDAVKALKNWLAahaHHPYPTDQEKDELKHLTGLKRSQISNWLANARRRGK 228
                  56777777777654432279******************************9976 PP

>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.2   1.1e+04       6      20 ..     182     196 ..     179     200 .. 0.73
   2 !   16.2   0.1   2.2e-06    0.0078       5      63 ..     604     662 ..     600     665 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.2
                  HHHHHHHHHHC-CT- CS
  HTH_Tnp_Tc5   6 kaLleWirqlrergi 20 
                  kaL++W+  ++ + +
   KKY17011.1 182 KALKNWLAAHAHHPY 196
                  899999988765555 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.2e-06
                  HHHHHHHHHHHC-CT---SCHHHHHHHHHHHHHSSSCT-TT-S--CHHHHHHHHHTS-- CS
  HTH_Tnp_Tc5   5 EkaLleWirqlrergipitgelirekAqelaslaadlgepdfkaSkgWldrFkkRhglk 63 
                  E  L ++i++ r  g+ +t+++++ +A+++   ++d++++++  +k Wl  +kk +++ 
   KKY17011.1 604 EMLLSKYIQEERVAGRVPTDAQLQVYARRVIYGDDDPWNQSPADNKQWLALIKKQNDFR 662
                  66799************************7655599**************999988776 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.4         5   1.8e+04       2       8 ..      89      95 ..      89      96 .. 0.78
   2 ?   15.5   0.7   6.7e-06     0.024       1      24 []     379     402 ..     379     402 .. 0.97
   3 ?   -3.0   0.2         5   1.8e+04       3       9 ..     425     431 ..     424     441 .. 0.42
   4 ?    2.9   1.1     0.071   2.5e+02       8      24 .]     454     470 ..     453     470 .. 0.87
   5 ?    9.7   0.1   0.00049       1.7       2      23 ..     491     512 ..     490     513 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5
   zf-C2H2_4  2 kCpiCgk 8 
                +C++C++
  KKY17011.1 89 PCDLCKQ 95
                5****65 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 6.7e-06
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkthH 24 
                 f+C++C+ sF  k+++ rH k+ H
  KKY17011.1 379 FQCTFCTDSFAAKYDWARHEKSLH 402
                 89*******************998 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 5
   zf-C2H2_4   3 CpiCgks 9  
                 C +C + 
  KKY17011.1 425 CYFCLAI 431
                 7777333 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.071
   zf-C2H2_4   8 ksFsskkaLlrHlkthH 24 
                 ++F +k++L++Hl+  H
  KKY17011.1 454 RTFYRKDHLRQHLRLLH 470
                 78999999*****9887 PP

  == domain 5  score: 9.7 bits;  conditional E-value: 0.00049
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkth 23 
                 +C +C++ Fs++ +  +Hl++h
  KKY17011.1 491 RCGFCPAEFSTWGQRVDHLAAH 512
                 6*************777**999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       945  (0.0527079); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.49
# Mc/sec: 5101.68
//
Query:       KKY17012.1  [L=622]
Description: putative atpase aaa+ type core [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.54
# Mc/sec: 3475.56
//
Query:       KKY17013.1  [L=316]
Description: putative beta-ig-h3 fasciclin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-21   76.9   2.5    5.2e-18   65.5   0.2    2.3  2  Fasciclin     Fasciclin domain
     0.0046   15.8   0.1     0.0068   15.3   0.1    1.2  1  BatD          Oxygen tolerance
  ------ inclusion threshold ------
      0.014   14.7   0.0      0.039   13.4   0.0    1.8  1  SKG6          Transmembrane alpha-helix domain
      0.049   14.0   0.1      0.093   13.1   0.1    1.4  1  CopD          Copper resistance protein D
        0.1   12.6   0.0        0.2   11.7   0.0    1.4  1  T2SSM         Type II secretion system (T2SS), protein M
       0.15   12.0   0.4       0.98    9.4   0.0    2.3  3  YajC          Preprotein translocase subunit
       0.65    9.9   6.5        0.1   12.5   0.9    2.3  3  Myc_target_1  Myc target protein 1


Domain annotation for each model (and alignments):
>> Fasciclin  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.2   0.00011      0.27      99     126 ..      10      38 ..       2      41 .. 0.80
   2 !   65.5   0.2     2e-21   5.2e-18      13     128 .]      71     178 ..      52     178 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
                 EEETT.EEEEEEEEEEESSEEEEEESS-T CS
   Fasciclin  99 vtvng.karvvrsdieatngvihvidkvL 126
                 +t n+  +++  +di  t g+ih++d++L
  KKY17013.1  10 ITGNKnVSSISLTDIVVTGGIIHIVDQLL 38 
                 5555577899999**************99 PP

  == domain 2  score: 65.5 bits;  conditional E-value: 2e-21
                 TTCCCCCTCSSSSEEEEEE-HHHHCCCHHHHHHHHHTCHHHHHHHHHTTEEES.SS-HHHHHHHHEEEECCTTSSEEEEEEEGGTTEEEETTEEEEEEE CS
   Fasciclin  13 aglaeeLnkkdgglTvFaPtneAfaklppellakllndkkklkeiLkyHvvpe.tvsssalkkasetlatllegaklrvniekgngtvtvngkarvvrs 110
                 + ++e L+     +T+F+P+ eA   l ++++ +  +++ +l++i +yHv+++ + +s  lk++  +l+t  +g++++++i+  +g+ +vn  a+v++ 
  KKY17013.1  71 TYVNEVLQV--TDVTFFIPNSEAA--LTAATNLSRSSNSTELQSIFEYHVISGfAGYSPLLKDG-MQLTT-AQGSNVTITIQ--DGDTYVNA-AKVTTF 160
                 345566744..49**********8..65556655556****************66799999999.*****.***********..99******.****** PP

                 EEEESSEEEEEESS-TSX CS
   Fasciclin 111 dieatngvihvidkvLlp 128
                 d+  +ngv hvid++L p
  KKY17013.1 161 DYLIANGVAHVIDDLLNP 178
                 ***************976 PP

>> BatD  Oxygen tolerance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   2.7e-06    0.0068     384     461 ..     182     264 ..     131     273 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.7e-06
        BatD 384 aaasspasstsaspaqkeevkllgkdir.fik.geaslkkkgsff....lfw..lllllplllfvvllllwrkrrrenadvaaskk 461
                 +  ++p+++++asp+ +++ ++++++++ +++ ++++ +++g ++    ++    llll +l++   +llw ++r+++a++a++++
  KKY17013.1 182 SLPAKPTTTATASPTTTSSSTSAASSTTlPVShSNHQSHSRGRTIglavGVTigGLLLLGALIW---FLLWSRNRKREAARAEQEN 264
                 4445555556666666666666666555355447777777777444555222343333333333...4667777777777666654 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.5e-05     0.039       5      37 ..     219     253 ..     215     254 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.5e-05
        SKG6   5 snsntvaIavaVaVPVaViiiv..LlailifvrRR 37 
                 s+s++ +I+ aV+V ++  +++  L+ +l++ r R
  KKY17013.1 219 SHSRGRTIGLAVGVTIGGLLLLgaLIWFLLWSRNR 253
                 79****************99962266666666655 PP

>> CopD  Copper resistance protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.6e-05     0.093      37      95 ..     219     276 ..     201     281 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.6e-05
        CopD  37 ttayGrlllaKlall.lvllalaalnrfrlvprleaatgaggqalrhrlrrsaalelvla 95 
                 + ++Gr++ + +++    ll+l+al++f+l  r ++  +++++a ++ l r+ +++++l+
  KKY17013.1 219 SHSRGRTIGLAVGVTiGGLLLLGALIWFLLWSRNRK--REAARAEQENLNRTSVINTGLG 276
                 4677888888887651578999***********955..5677777779*******99997 PP

>> T2SSM  Type II secretion system (T2SS), protein M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.7e-05       0.2      19      51 ..     232     263 ..     230     270 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.7e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       T2SSM  19 laalglvlllallylllwqPlserieraqaelq 51 
                 ++++gl+ll al+++llw+   +++e+a+ae +
  KKY17013.1 232 VTIGGLLLLGALIWFLLWSRN-RKREAARAEQE 263
                 789***************854.44455555544 PP

>> YajC  Preprotein translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2      0.67   1.7e+03      40      53 ..      23      36 ..      21      54 .. 0.71
   2 ?   -2.7   0.1       2.1   5.4e+03      38      53 ..     130     145 ..     127     158 .. 0.52
   3 ?    9.4   0.0   0.00038      0.98       6      37 ..     237     267 ..     232     277 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.67
        YajC 40 eVvtigGivGkvvk 53
                 +v +gGi+  v +
  KKY17013.1 23 DIVVTGGIIHIVDQ 36
                58999999866654 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.1
        YajC  38 GdeVvtigGivGkvvk 53 
                 G + +t+ G   +++ 
  KKY17013.1 130 GMQLTTAQGSNVTITI 145
                 5555555554444433 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00038
        YajC   6 lvlifvifyfllirpqqkkqkehkemlasLkk 37 
                 l+l+ ++++fll+ +++k++ +++e +++L++
  KKY17013.1 237 LLLLGALIWFLLWSRNRKREAARAE-QENLNR 267
                 6678899*******99999998888.667766 PP

>> Myc_target_1  Myc target protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.4   3.5e+03      87     106 ..      88     107 ..      79     155 .. 0.65
   2 ?    0.2   0.7      0.23     6e+02     143     165 ..     192     214 ..     179     225 .. 0.43
   3 ?   12.5   0.9   3.9e-05       0.1       9      62 ..     212     267 ..     204     274 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.4
  Myc_target_1  87 rSnlslasalsfqRqtSleq 106
                   +S+ +l++a ++ R + + +
    KKY17013.1  88 NSEAALTAATNLSRSSNSTE 107
                   56666666666666543322 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.23
  Myc_target_1 143 prsptlstssvseaaslsrpesf 165
                   + spt+++ss+s+a s++ p s+
    KKY17013.1 192 TASPTTTSSSTSAASSTTLPVSH 214
                   22223333322233322222222 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 3.9e-05
  Myc_target_1   9 lleilesfdledlilaFcvSmvvG..Lllgaliyvlltwlsrrrasaritrrssrr 62 
                   +++ +++ + +  ++  +v + +G  Lllgali+ ll    r+r +ar  + + +r
    KKY17013.1 212 VSHSNHQSHSRGRTIGLAVGVTIGglLLLGALIWFLLWSRNRKREAARAEQENLNR 267
                   55555555566677888899999888899********9999999999987666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1016  (0.056668); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2154.86
//
Query:       KKY17014.1  [L=493]
Description: putative grf zinc finger domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-36  124.1   0.1    1.1e-35  123.7   0.1    1.2  1  2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
    0.00018   21.5   6.8     0.0071   16.4   1.6    2.5  2  zf-GRF          GRF zinc finger


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.7   0.1   1.2e-39   1.1e-35       2     196 .]     131     361 ..     130     361 .. 0.88

  Alignments for each domain:
  == domain 1  score: 123.7 bits;  conditional E-value: 1.2e-39
  2OG-FeII_Oxy_2   2 lllipnflsaeeaaellrell.eegpfrqptilg.gkrvsvqqt...llgplgwatdg.pgyrysekesvdakplspfpeallrlverlvkaag. 89 
                     + +i+nfls++ a+ell+el+ e++ f+++ ++   + v++ +t   +  +l++a ++ ++y y++ + +d ++++p+++ + +lv+++v+ +  
      KKY17014.1 131 CSIIHNFLSPSLADELLSELMtESQTFTSASFKLfDNVVQSPHTysfYVSSLDEANQQkQDYVYNGSYLNDVRQITPLMQRVSDLVKEAVNVEIk 225
                     789******************888999***999855666766653234489999888879******************************97779 PP

  2OG-FeII_Oxy_2  90 .................pegwspnaalvnfYrdga.riglHqDkees.aleapivSlSLGasatfrfg........kesree.........eiia 148
                                      p++w+pnaa+vn+Y   + ++g H+D+ ++ +++a i SlSLG +++fr++        +    +          +ia
      KKY17014.1 226 rriqthypngqklqyqtPKQWQPNAAFVNRYAGAKqSVGFHSDQLTYlGPRAIIGSLSLGVAREFRVRkivpkdndS----KshdpvadasGQIA 316
                     ********************************9888*********888*******************9777655441....1455677777**** PP

  2OG-FeII_Oxy_2 149 ilLesGdllvmggesrkay.Hgvprikkdt.apeleleelrtrRinlTfR 196
                     i+L++++ll m++e+++++ H++ + ++ t +p       +t Rin+T+R
      KKY17014.1 317 IHLPHNSLLTMHAEMQEEWkHCISPALTITpHP-----ISGTSRINITYR 361
                     ****************************64044.....489********9 PP

>> zf-GRF  GRF zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   1.6   7.9e-07    0.0071       1      30 [.     373     402 ..     373     405 .. 0.92
   2 !    7.3   0.3   0.00055       4.9      32      43 ..     438     449 ..     434     451 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7.9e-07
      zf-GRF   1 plCkcgrlavlltvrktgpNkGRkFYkCpk 30 
                 p C cg ++vl+ v+++ +N+GR  + C +
  KKY17014.1 373 PRCRCGLPCVLRSVQRKKENRGRYMWMCHA 402
                 57*************************976 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00055
      zf-GRF  32 kekqCgFFkWad 43 
                 ++  C +F+Wa+
  KKY17014.1 438 SGGGCSYFQWAE 449
                 5578******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3204.50
//
Query:       KKY17015.1  [L=519]
Description: hypothetical protein UCRPC4_g05740 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       952  (0.0530983); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3658.73
//
Query:       KKY17016.1  [L=483]
Description: putative protein bni4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.093   13.0   0.2       0.32   11.3   0.2    1.9  1  PDZ_5     PDZ domain
       0.57    9.5  14.5       0.97    8.8  14.5    1.3  1  CDC27     DNA polymerase subunit Cdc27


Domain annotation for each model (and alignments):
>> PDZ_5  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   3.6e-05      0.32      20      56 ..     409     444 ..     392     446 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.6e-05
       PDZ_5  20 eesskakvkkkskvkFstdPikvystfsvedYDRRne 56 
                 +++ +++  +++ ++Fs   i+ + t+  +dYDRR +
  KKY17016.1 409 KNTPNTPRGTNRNISFSP-RIQFHDTWTSSDYDRRGD 444
                 3455677788999***96.5***************75 PP

>> CDC27  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  14.5   0.00011      0.97     120     266 ..      22     174 ..       7     193 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00011
       CDC27 120 qagpivnkevkraeelgrpplaapaseakektangkkpka......akekaaketssakseskkksaekskdaskettkekaekaasskaaslkkkasa 212
                 q +  + +  k++ +l    +++ ++++++ t+++  +k+      +k  +a++  +++++ ++ +++ ++++s ++ +++   aa + aa +kk +++
  KKY17016.1  22 QSVQQATAVAKQEVKL--VNVPPRTPDSSKRTTPSPLSKPvtmspePKVDTAPSPPPVEESEPAPATPVARPSSPAKVAVADSPAARQLAALGKKDEKK 118
                 4444444444444444..566666666666666666666566777799999********9999999999****************************** PP

       CDC27 213 ksnimksf.fkakpaekkkkteakeqkveee.seeekekedkeleddsaaeeeeee 266
                 ks++  +f f++++  +k+ ++a+++k ++  +     k ++ele+++aa +e +e
  KKY17016.1 119 KSKLRRAFsFGSASELRKATAQANIEKENAVkASRRTSKYEDELEPEQAAIAERQE 174
                 ****9999446666667777777766655442334444556666777774444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 3003.01
//
Query:       KKY17017.1  [L=432]
Description: putative homocysteine s-methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-48  165.3   0.0    3.3e-48  164.8   0.0    1.2  1  S-methyl_trans  Homocysteine S-methyltransferase


Domain annotation for each model (and alignments):
>> S-methyl_trans  Homocysteine S-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.8   0.0   1.8e-52   3.3e-48       2     268 .]      27     423 ..      26     423 .. 0.80

  Alignments for each domain:
  == domain 1  score: 164.8 bits;  conditional E-value: 1.8e-52
                     EB---SHHHHHHT......----STTHHCCHHH....-HHHHHHHHHHHHHHT-SEEE-TTTT--............GG.....T--HHHHH.HH CS
  S-methyl_trans   2 ilDGgmgteLerr......adlseelwsaellt....rpelikeihrdyleaGadiieTnTyqas............kik....gleeeeeveel 70 
                     i+DGg+gt+L +       ++++++lws++llt    r++ + ++h++++eaGad+i T+Tyq s            k      ++ +++e++e 
      KKY17017.1  27 IFDGGLGTSLGASpynlqfTSTKTPLWSSHLLTtpalRKNYLLDLHKRFIEAGADVIGTATYQGSfegfgltrkedgK-PgeegEFFTRDEAKEC 120
                     89********877889888778888*******735556689************************9999987665541.04444344579999** PP

                     HHHHHHHHHHHHHHH.....H..........EEEEE--HHHHCTS.....-.--...--HHHHHHHHHHHHH.H.................HHHC CS
  S-methyl_trans  71 nraavelareaadeaaa.plf..........vagsvGpygatlsd.....g.yd..llsfeelveahreqir.a.................llea 128
                     +r ++e++rea ++a+  + +           a+s+Gp+gatl +     g y+  ++ +++l+++h e+++ +                 l+ +
      KKY17017.1 121 MRCGIEVVREAFEKAEVgR-KagsdeqrlgiTALSLGPLGATLIPgaeysGlYPdeMTGKDKLRDWHLERLKvFfdegevgsrngmeekksLVLG 214
                     **************96650.345566666789*************7766655545459**************6699999999999999999899* PP

                     T-SE.EEEEEE--HHHHHHHHHHHT................T...--EEEEE-ECCT.T.ETTS-BHHH.HHHHHCT-.....TEEEEEEES--G CS
  S-methyl_trans 129 gvDl.llietipdlleakaavellaa...............e...lpvwisftikdest.lrsGetleeavaalaaat.....qplavgvNCakp 198
                     ++D+ +++et+p+ +e++ ++ ++ +               +    p+wis+++  e++ l++G+t+ee+v+a+          p ++g+NC+k 
      KKY17017.1 215 RPDIvIAFETLPRRDEIEGVRAAMGIlglgvkkrrdgsgeaLlslPPFWISCVFPREDErLPDGSTVEELVEAIMGCPspiqpLPSGIGINCTKL 309
                     ***73689************888888888988888777765156678*******544444*********999999966999533378******** PP

                     GGHHHHHHHH.......HTT--S-...EEEE--...................-.S-----------....-HHHTTEE................E CS
  S-methyl_trans 199 eelepllkel.......ksetalpa..vivypn...................sagevydltpeewaesaeewleagan................i 249
                      +l++l+ +l       + +ta p   +++yp+                    a+++ d+++++wae +ee++++ +                 +
      KKY17017.1 310 YKLRSLILSLessittlSPNTAQPLfhLVLYPDgapnhiydtitqtwvpkptTANDKSDQQTKSWAEMLEEIVNEVVHrekerrkdgkgiwrgiL 404
                     **********9999998444555656789999977666666666666665532445677777777777777665554456777788888888878 PP

                     E---TT--HHHHHHHHH.. CS
  S-methyl_trans 250 iGGCCgttpehIraiaeav 268
                     +GGCC ++ + I++++e+v
      KKY17017.1 405 VGGCCMVSVDGIEELRERV 423
                     ****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2969.21
//
Query:       KKY17018.1  [L=426]
Description: putative gpi-anchored cell wall beta-endoglucanase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-11   43.1   0.3    6.3e-11   42.4   0.3    1.3  1  Glyco_hydro_17  Glycosyl hydrolases family 17


Domain annotation for each model (and alignments):
>> Glyco_hydro_17  Glycosyl hydrolases family 17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.3   3.5e-15   6.3e-11     104     312 ..     119     307 ..      73     308 .. 0.76

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 3.5e-15
  Glyco_hydro_17 104 avflvpamanirnaltaaglsnkikvstalaldildssy.ppsqstfreevkpvvdpivvflagtnspllvnvyPYfvysndpsnvsLdyalfqk 197
                     a   v+++ ++rn+ t  +  ++i    ++ +d +++     s  + + ++   vd +  + +++ns ++ n + ++    d      +y +fq 
      KKY17018.1 119 AGISVGSEDLYRNSATGIENDSDIGANPDVIVDYIKQVReAISGTSWSSAAVGHVDTWDAWTNSSNSDVISNCD-WLG--VD------EYPYFQY 204
                     56789********99988888899888888887766543033444445555567********************.333..33......4778887 PP

  Glyco_hydro_17 198 qslvndnglayrnlfDaildavyaaqekkGgtdielvvsEtGWPsdGstgaslenaatyveNlikkvkeGtpskpgkgietyvfalFdEnqKpee 292
                       +++    + ++lfD   d   aa e k     e+++ EtGWP  G+   + ++a++++eN++  + e  +   g +++t  + l d n   ++
      KKY17018.1 205 TEANS--IENGKSLFDTAYDVTKAAAEGK-----EVWITETGWPVSGD---TEGDAVPSLENAKTYWDEVGCPSFG-SVNTWWYTLQDSNPTTPN 288
                     77765..55689*****999877776644.....89************...789**************65555566.7********999876665 PP

  Glyco_hydro_17 293 svekhfGvfkpd..kslkYsld 312
                          fGv  +   +++ Y+l 
      KKY17018.1 289 ---PSFGVIGSTltTTPLYDLS 307
                     ...5688876642245666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1250  (0.0697194); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                       111  (0.00619109); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.50
# Mc/sec: 2587.65
//
Query:       KKY17019.1  [L=777]
Description: hypothetical protein UCRPC4_g05744 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-20   74.1   0.0    3.1e-20   73.1   0.0    1.5  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family
  ------ inclusion threshold ------
       0.08   12.1   0.0       0.14   11.3   0.0    1.3  1  CsiD      CsiD


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.0   3.4e-24   3.1e-20      11     266 ..     353     602 ..     343     604 .. 0.80

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 3.4e-24
        TauD  11 aegvdlsdleslddelkeelrellaeygvvvfrgfpl...speqqlefarrfGplygtpgrgtntkygevld...vssvyesadianlayttll..... 98 
                  ++++l++   l+ +l+++ + ++ + g++++rg+     ++e+ + +++++  ++ +    ++t+ ++++d    ++  ++a + + +y+        
  KKY17019.1 353 SRSFQLPKS--LSLRLRRTSKGVHSGLGFAILRGLKPnkyTDEDNILIYAGI-ASHVGD---RRTHLTHIYDrspIEDYFTDAANEQAKYPPNEmsiem 445
                 447888887..5555899999999999*******988899***********9.666666...4444444555444444444555555555555556666 PP

        TauD  99 .wHtD.lsylesppgiqlLhcleapatGGetpfvDgraaynaLpeelpellegltavrvyyhyrggglrteqelpavdkhprtghpvvrthp....... 188
                  +HtD         +i+ L++   + +GG  ++++++++yn L+++ pe l++l++  ++++ +                 +  +p+++ h+       
  KKY17019.1 446 nFHTDvD-----SGDILSLYAQNLSRSGGKQYLASFWQVYNILAKTSPECLKTLSENWRFEMPQA---------------GVIHRPIIYFHKgklqltf 524
                 7899943.....49******************************************999999999...............8889999999999987777 PP

        TauD 189 ....vltgrkallvnppfatrieglgtpeskelldaleelledpeftyrfqwqeGdlvifdNrrvlHgrtaf....degeeRhllr 266
                     v tg ++l+ +   a+++     ++++++++ l e ++  + +++++ + Gd+++++N+++lH+r+af    d+g++Rhll 
  KKY17019.1 525 aaafV-TGSAYLQRS-SEAPQL----IAKQYDAIQKLTETCR--AASLELTPECGDILFVNNLCILHARDAFvndlDTGKNRHLLS 602
                 66666.777777777.444444....5999999999999998..9999999999******************9999999****986 PP

>> CsiD  CsiD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.5e-05      0.14     251     283 ..     561     593 ..     506     603 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.5e-05
                 TT-EEE---TT-EEEEETTTEEEEE--B---TT CS
        CsiD 251 kkklevkvpvGslllinnlfwlhGrdkfeenee 283
                 ++ le++ + G++l++nnl+ lh rd+f ++ +
  KKY17019.1 561 AASLELTPECGDILFVNNLCILHARDAFVNDLD 593
                 3456666789******************98644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 5257.16
//
Query:       KKY17020.1  [L=323]
Description: putative alpha-ketoglutarate-dependent taurine dioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-37  127.7   0.2    1.2e-27   97.4   0.2    2.1  2  TauD      Taurine catabolism dioxygenase TauD, TfdA family
  ------ inclusion threshold ------
      0.024   14.7   0.0      0.043   13.9   0.0    1.4  1  Fn3-like  Fibronectin type III-like domain


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0     1e-10   9.1e-07       2      77 ..      47     124 ..      46     150 .. 0.79
   2 !   97.4   0.2   1.3e-31   1.2e-27     118     259 ..     140     294 ..     132     302 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 1e-10
        TauD   2 vkpltpkfgae..gvdlsdleslddelkeelrellaeygvvvfrgfplspeqqlefarrfGplygtpgrgtntkygev 77 
                 + +ltp +g+e  +v+++dl + d++l + l   + e+gvv++r++++sp+q +e+++r+  + g p +   + ++ +
  KKY17020.1  47 YSDLTPVIGREylDVQVADLLAGDEQLIKDLAITISERGVVFLRNQDVSPQQMRELCQRITASAGCPESSGLHVHPLT 124
                 5789***************9777777799999999*************************766666655555544444 PP

  == domain 2  score: 97.4 bits;  conditional E-value: 1.3e-31
        TauD 118 leapatGGetp.....fvDgraaynaLpeelpellegltavrvyyhyrg........gglrteqelpavdkhprtghpvvrthpvltgrkallvnppfa 203
                 +++++ GG t      +++g+++y++L++ ++++leglta+++               + + + ++ +  ++ ++ hpv+rt+pv tg+k+++vn+ f+
  KKY17020.1 140 EKQKKGGGLTHqlsdlWASGYEIYDRLSPNMQQFLEGLTATHDAKFFLEeaerlgnpLRTGIRGSPLNHGSDLQAVHPVIRTNPV-TGWKSVYVNKGFT 237
                 5566677888888888****************************999999*****887777788888999999***********8.************* PP

        TauD 204 trieglgtpeskelldaleelledp.eftyrfqwqeGdlvifdNrrvlHgrt.afdeg 259
                 +ri+g++++es+ ll +l+ ll+++ + ++rf+w ++dl+i+dNr+ +H++t ++ e 
  KKY17020.1 238 KRINGVTKDESDFLLGYLFNLLTQNhDAQVRFKWNKNDLAIWDNRSNWHCATyDY-EA 294
                 ************************88***************************99.43 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.8e-06     0.043      29      64 ..     259     293 ..     231     298 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.8e-06
                 E-TT-EEEEEEEEECGGG-EEETTTTEEE--SCEEE CS
    Fn3-like  29 LapGesktvtftldrkdlsvwdeekqkwvvepGeyt 64 
                 L +   ++v+f+ ++ dl++wd + ++w   + +y+
  KKY17020.1 259 LTQNHDAQVRFKWNKNDLAIWDNR-SNWHCATYDYE 293
                 5667789*****************.79**9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2578.44
//
Query:       KKY17021.1  [L=292]
Description: hypothetical protein UCRPC4_g05746 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2283.11
//
Query:       KKY17022.1  [L=518]
Description: putative glycoside hydrolase family 47 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   9.6e-139  463.2   0.0   1.1e-138  463.0   0.0    1.0  1  Glyco_hydro_47  Glycosyl hydrolase family 47


Domain annotation for each model (and alignments):
>> Glyco_hydro_47  Glycosyl hydrolase family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  463.0   0.0  6.2e-143  1.1e-138       2     458 .]      46     513 ..      45     513 .. 0.94

  Alignments for each domain:
  == domain 1  score: 463.0 bits;  conditional E-value: 6.2e-143
                     HHHHHHHHHHHCTTSSEEETTTTEEE-SS.SS-CCHHHHHHHHHHCCHHHHHHHHHHHHHHC----S.SS.EEEHHHHHHHHHHHHHHHHHHH.. CS
  Glyco_hydro_47   2 fkhswegYkkyAwghDelrPlskkgrdtfgglgatlvDsLdtllimglkeefeeaveavekkidfdtsdskevsvFEttIRyLGGLlsaydls.. 94 
                     f+ +w+gY kyA++hD l P+s ++ d  gg+ga+ +D+++t++im+++e ++ +++++  +idf+ts+  e+s+FEttIRyLGGLls ydl   
      KKY17022.1  46 FQIAWDGYYKYAFPHDALAPVSDGYIDDYGGWGASAIDAFSTAIIMENQEVVNTILNYIP-TIDFSTSPY-EISLFETTIRYLGGLLSGYDLLlg 138
                     99**********************************************************.*****8777.************************ PP

                     .........S-HHHHHHHHHHHHHHHHGGGSSTTS---SEEETTT--EE-.STCGCEEEHHHHCSSHHHHHHHHHHHT-CHHHHHHHCCHHHHHC CS
  Glyco_hydro_47  95 ........ekkedvllekAveladrLlpAFdtpsglpvarvnlkkrkaskkerassesvlAelgslslEftrLsqlTgdkkYedlaervtkalee 181
                             ++  d +le+A++lad+L  AFdtp+g+p++++ l+++++  ++    ++ lA++gsl+lE+trLs+lTg+++Y++l++++ ++l +
      KKY17022.1 139 plsnlttnATAVDAILEQAKNLADNLKWAFDTPTGIPYNNLFLDNHTTDGST----TNGLATIGSLVLEWTRLSDLTGNTEYANLTQKAESYLLN 229
                     ******999999*******************************544432222....2358*********************************** PP

                     HC..C.HHHTTB-BSEEETTT--EESTEE-SSTTTHHHHHHHHHHHHHCTS--HHHHHHHHHHHHHHHHH.TEEE-TTT..--EEE-EECTTCTS CS
  Glyco_hydro_47 182 lq..ektklpglvpikidastgkfvaekislgargDSyYEYllKqylllggeeeqyrkmyeealdaikkhllfrpskkkeddllfvgevtsteeg 274
                      q  + + +pglv++ +++++g+f + + ++ ++ DS+YEYl+K+y++ +++  +y++++ +a+d+  ++l+++ps++   dl+f++ ++   ++
      KKY17022.1 230 PQpaWAEPWPGLVGTDVSIENGSFLDASGGWVGGDDSFYEYLIKMYVYDSSRFAEYKDRWIAAADSSIEYLASHPSTRP--DLTFLAAYD---GT 319
                     **999999*********************************************************************99..9******85...77 PP

                     .EE-EEEGGGGHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTSTTS---SEEEE-SS........S-ECTSSSSEEE-....GGG--B--- CS
  Glyco_hydro_47 275 klspeidhLscFlgGllalgakllekeedlelAkkltegcvkayeatktglmPEifevkpces...aeecewneekkdealk...riedrkyllR 363
                     +ls+  +hL+cF gG+++l++  l+++++++++ +l++gc ++y++t tg++PE+f++ ++++   +  + + +++++++++   +i+d+ y+lR
      KKY17022.1 320 NLSFVSEHLACFDGGNFILAGLVLDEQKYIDFGLELVAGCEDTYNSTLTGIGPETFKWVDSNNpnaT--EGVPANQTAFYEEagfWITDSVYILR 412
                     8********************999***********************************98885432..333344444444466799******** PP

                     -HHHHHHHHHHHHH--THHHHHHHHHHHHHHHHCEETTEE--ECETTSS.S-EE-S-B-HHHHHTHHHHHHHHC-S-TTT-.....TTTEEE-TT CS
  Glyco_hydro_47 364 PEaiESlfylYritgdekyrevgwemfealekatktesgysaledVtke.epekeDemeSFwlaEtlKYlYLlFsdedvls.....ldeyVfnTe 452
                     PE+ ES++y+Yr+tgdekyre+ w+ f a+++++++ sgy++ledV++   + + De++SF++aE+lKY YL+++d+   +      +e+VfnTe
      KKY17022.1 413 PEVLESFYYAYRATGDEKYREWSWNGFLAINSTCRAGSGYAELEDVNAPdGGGFMDEQDSFFFAEVLKYAYLIHADDAPYQvdyngVNEFVFNTE 507
                     ***********************************************997889*************************988779999******** PP

                     S-EEE- CS
  Glyco_hydro_47 453 AHplkr 458
                     +Hplk+
      KKY17022.1 508 CHPLKV 513
                     ****85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3674.42
//
Query:       KKY17023.1  [L=558]
Description: putative het-s domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-08   34.8   0.0    3.6e-06   26.6   0.0    2.5  2  Pkinase      Protein kinase domain
     0.0001   21.7   0.0     0.0042   16.4   0.0    2.2  2  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0     4e-10   3.6e-06      85     168 ..     312     416 ..     244     425 .. 0.73
   2 !    5.8   0.0   0.00087       7.8     174     198 ..     451     475 ..     442     551 .. 0.69

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 4e-10
                 HHHHHH..HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTE..............EEE-SGTTSEESSSSCS....BCTTTSCGG CS
     Pkinase  85 ladlle..rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekge..............lKitDFGlakelesssk....ltsfvgtse 162
                 l+dl++     ++s +++ ++a ++ ++++y+H+ g +H  + p+NiLi  +k++              l ++ FG ++++  + +     +    t+ 
  KKY17023.1 312 LKDLIKhgVAENYSLTQILRLALELTSAISYIHAVGWVHESIRPQNILICySKDDiskdsnmisrqpgvLNLCGFGSSRRMAPQVRshgpDDGDWTTEL 410
                 777777433344777799999****************************95422255555566666777************998877775556667777 PP

                 GS-HHH CS
     Pkinase 163 YlAPEv 168
                 Y+ PE 
  KKY17023.1 411 YCHPER 416
                 888875 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.00087
                 BSHHHHHHHHHHHHHHHHHSS-STT CS
     Pkinase 174 yskkvDvWslGvilyelltgkppfs 198
                 ++++ D++slGv+l+el  +k +  
  KKY17023.1 451 FEPQHDIYSLGVVLLELGLRKDLET 475
                 57889***********988776654 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.7e-07    0.0042      87     152 ..     311     391 ..     248     422 .. 0.84
   2 !    3.0   0.0    0.0057        51     181     200 ..     450     469 ..     439     503 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.7e-07
                  BHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE...............TTEEEE-STTTHEE CS
  Pkinase_Tyr  87 dLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse...............nkvvkisDfGLard 152
                  +L++ +++   e+ +l+++l++al++ ++++y+++   vH  ++ +N+L++                  v  ++ fG +r+
   KKY17023.1 311 TLKDLIKHGVAENYSLTQILRLALELTSAISYIHAVGWVHESIRPQNILICYskddiskdsnmisrqPGVLNLCGFGSSRR 391
                  5777777778999*************************************9755666666666665555666666666655 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.0057
                  EEEHHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 181 kftsksDvWsfGvllwEift 200
                  +f+ + D++s Gv+l E+  
   KKY17023.1 450 RFEPQHDIYSLGVVLLELGL 469
                  688899***********865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.49
# Mc/sec: 3440.54
//
Query:       KKY17024.1  [L=1193]
Description: putative dimethylaniline [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-25   88.3   0.0    3.9e-13   48.7   0.0    3.1  2  FMO-like       Flavin-binding monooxygenase-like
    1.2e-20   74.0   0.0    5.5e-20   71.8   0.0    2.0  1  Pkinase        Protein kinase domain
    1.5e-10   40.8   0.0    0.00013   21.3   0.0    2.8  3  Pkinase_Tyr    Protein tyrosine kinase
    4.7e-08   32.7   0.1    8.6e-05   21.9   0.0    3.2  3  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    5.4e-08   33.0   0.0    1.8e-07   31.3   0.0    1.9  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    5.1e-07   29.2   0.0    3.6e-06   26.4   0.0    2.3  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.5e-05   24.7   0.1     0.0025   17.5   0.1    3.0  3  DAO            FAD dependent oxidoreductase
    0.00032   19.9   0.1       0.77    8.8   0.0    2.9  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
     0.0039   17.2   0.2        0.7    9.9   0.0    4.2  5  NAD_binding_9  FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.091   12.0   0.0       0.18   11.0   0.0    1.4  1  Thi4           Thi4 family
       0.13   12.4   0.3       0.39   10.8   0.3    1.8  1  LPD11          Large polyvalent protein-associated domain 11


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   2.4e-16   3.9e-13      59     208 ..     794     950 ..     752     962 .. 0.77
   2 !   34.3   0.0   5.6e-12   9.2e-09     296     404 ..     971    1086 ..     969    1105 .. 0.74

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 2.4e-16
    FMO-like  59 snsskemscfsdfplped..ypnflhnsklleylklfakefdllkyiqfkttvcsvkkrpdfst.sGqwevvtekegkke......savfdavmvctGh 148
                 +n+    + fsd p+p     p +++++ + +y+ ++  +      +  +ttv  v k p       +w ++ +k++  +      ++ fda+++  Gh
  KKY17024.1 794 TNVPAIAMSFSDIPFPYGpfVPHWIPKQYIANYFSAHRIDLS----LVSNTTVEDVSKLPSKPPgLDRWSLTLRKNDPVRgvdewwKEEFDALVIANGH 888
                 677777899***999943225666666666666665444444....4568********9987641579999988765432111233578********** PP

    FMO-like 149 hvnphlpl.esfpG.iekfkGqyfhsrdykepevfkgkrvlviGlGnsggdiavelsrtaeq 208
                 +  p++p+ + + G ++kf  ++ hs+ y++p+ f++krvlviG   sg di++ l +t + 
  KKY17024.1 889 YSVPFVPKvKGLDGyLQKFPHRISHSKVYRTPQPFTNKRVLVIGNSASGHDITASLLKTVKL 950
                 *******7467888689************************************999998875 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 5.6e-12
    FMO-like  296 vkvkssvkelt..etsaifedgtveedidvvifatGytfafpflee......slvkveknkvslykkvfpanlekptlaiiGliqplGsilptvelq 384 
                  v+ k+ ++e+     s++f dg+v  did vi++tGy  +fpf +       ++   e+ kv+   ++     ++ptlai+Gl + l   + + e q
  KKY17024.1  971 VEWKPIITEFVpsSGSIVFSDGSVLTDIDHVIYCTGYKVSFPFWNThanggkPIWDYENSKVF-GSYLHTFFQDHPTLAIVGLPRFL--TFRGFEYQ 1064
                  56688888886214579***************************8611111145555555554.23444445589********7776..699***** PP

    FMO-like  385 arwavrvlkGlk..klpsekel 404 
                  a  ++rv+ G +  ++ps++e 
  KKY17024.1 1065 AIAVARVFAGRNaeQIPSKEEQ 1086
                  ********99653379998765 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.0   3.4e-23   5.5e-20       3     192 ..     376     612 ..     375     702 .. 0.83

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 3.4e-23
                 EEEEEEEESSEEEEEEEET........TTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS...CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH CS
     Pkinase   3 kleklGeGsfGkVykavek........etgkivAvKkikkekakkkkekkvlrEikilkklk...hpnivrlyevfeekdelylvleyveggeladlle 90 
                 ++  +G+G+fG+V+ka+ +        ++++ +AvK++k +  + ++e  ++rE + l+kl    h ni   + +++++ ++yl++ +++  +l +ll+
  KKY17024.1 376 QKDLVGKGGFGEVFKARIHpnhhsyspNRDEYYAVKRFKAHGPNTDSE--FRREESQLQKLYhspHANITLHLASWSQDGRYYLIFPLAD-SSLRELLR 471
                 56789**********974411112222567899*******98887665..9999999988877899***********************9.66****** PP

                 .HHSS--HHHHHHHHHH...HHHHHHHHHHTT....................EE-SS-SGGGEEEETTTE......EEE-SGTTSEE.SSSSCS..... CS
     Pkinase  91 .rkgslseeeakkiakq...ilegleylHskg....................iiHrDlKpeNiLidekge......lKitDFGlake.lesssk..... 153
                      l+ +++k +++q   i+ ++e +H ++                     +H DlKp NiL+ +  +      lKi+DFG ak  +  s +     
  KKY17024.1 472 gPAPELTGANVKWLFSQlnnIVGAVERIHIHKdnapvpverlgppqptpkqtGFHQDLKPGNILVFNGSDkitdsvLKISDFGTAKLdFVLSGSglhhg 570
                 74445888888855544222899***888666679************999999************95222466777*********96433333347899 PP

                 ...BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHH CS
     Pkinase 154 ...ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyellt 192
                    +++  g+ eY +P + +++e +++ D+WslG+ ++e+l 
  KKY17024.1 571 tprTRNPQGDYEYESPDWAQTQELGRPNDIWSLGCCFLEILL 612
                 9999***********************************985 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   8.2e-08   0.00013       5     101 ..     378     478 ..     375     506 .. 0.77
   2 !   16.0   0.0   3.4e-06    0.0055     125     199 ..     525     611 ..     520     633 .. 0.79
   3 ?   -2.3   0.1       1.3   2.2e+03      47     100 ..     678     731 ..     665     745 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 8.2e-08
                  EEEEEESSEEEEEEEEET....TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS...-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkg....ekekkevkVavKtlkeeateeekeelleeakimkkl...khpnivkllgvctkeepllivteyvkgGdLlkfLrkk 95 
                  + +G+G fG+V++++++      + ++++  avK +k++  ++  +e+ +e + ++kl    h ni   l+  ++++++++++ +++  +L++ Lr  
   KKY17024.1 378 DLVGKGGFGEVFKARIHPnhhsYSPNRDEYYAVKRFKAHGPNT-DSEFRREESQLQKLyhsPHANITLHLASWSQDGRYYLIFPLAD-SSLRELLRGP 473
                  678**************9888777788999******8877766.788888877777764336889999999999*********9876.5899999987 PP

                  CTTTSB CS
  Pkinase_Tyr  96 ekeklt 101
                    ++lt
   KKY17024.1 474 -APELT 478
                  .55554 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 3.4e-06
                  EEST-SGGGEEEEE......TTEEEE-STTTHEET..TTSSEE....EETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 125 vHrdlaarNvLlse......nkvvkisDfGLardi..ekddey....vkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEif 199
                   H+dl   N+L+ +      ++v kisDfG a+     + +       ++++ +  +++ +p   +++++    D+Ws G +  Ei+
   KKY17024.1 525 FHQDLKPGNILVFNgsdkitDSVLKISDFGTAKLDfvLSGSGLhhgtPRTRNPQGDYEYESPDWAQTQELGRPNDIWSLGCCFLEIL 611
                  6***********9988999899********9996522333333323244555667789***************************86 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.3
                  HHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr  47 elleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                  ell+ +k+m +lk ++  k++ v +  + +li +e+  + d++ +Lr++++++ 
   KKY17024.1 678 ELLRWVKLMLTLKTDERPKVHQVKYAFHAMLIQLEFELQTDMEYYLRDHSNHSE 731
                  667777888888888888888888877888888999999999999999955444 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.014        23       2      30 ..     757     786 ..     755     805 .. 0.78
   2 !   21.9   0.0   5.3e-08   8.6e-05     127     187 ..     881     948 ..     876     982 .. 0.76
   3 ?    2.4   0.0     0.047        76     247     275 ..     987    1015 ..     977    1030 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.014
  Pyr_redox_3   2 IiGaGPaGlaaaielkkagl.edylilEkg 30 
                  +iGaG+ G a+a +lk  ++ +++ + E+ 
   KKY17024.1 757 VIGAGASGAATAAALKAEDVfDTIRVFERR 786
                  8**************998874666677765 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 5.3e-08
  Pyr_redox_3 127 kviiAtGefdkPnklnipGeek.lvk......hyskvkefhkyagqkvvViGgknSavDaAlelvrkg 187
                   ++iA G ++ P +++++G +  l+k      h++ ++ ++++++++v+ViG + S+ D+   l ++ 
   KKY17024.1 881 ALVIANGHYSVPFVPKVKGLDGyLQKfphrisHSKVYRTPQPFTNKRVLVIGNSASGHDITASLLKTV 948
                  689****************984322222233377778999*********************9999873 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.047
  Pyr_redox_3  247 vktedgkkvevkddvvlatGykpdlsflk 275 
                   + ++dg+ ++  d v+++tGyk ++ f +
   KKY17024.1  987 IVFSDGSVLTDIDHVIYCTGYKVSFPFWN 1015
                   67899999999***********9998765 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   1.1e-10   1.8e-07       1      49 [.     757     812 ..     757     826 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 1.1e-10
                    EE--SHHHHHHHHHHHCCTE..EEEEE-SSSSSSGGG-EECE.....TTCEECTS- CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagf..dvlllekrdrlGGraasyev.....pgvrvdyga 49 
                    ++GaG+sG+++A++L+ +++   + ++e+r ++GG ++ +        ++++ yg+
     KKY17024.1 757 VIGAGASGAATAAALKAEDVfdTIRVFERRASPGGTCTNVPAiamsfSDIPFPYGP 812
                    8****************977777***************996655555567777775 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1   0.00057      0.93     129     162 ..     732     772 ..     724     795 .. 0.69
   2 !   26.4   0.0   2.2e-09   3.6e-06       1     164 [.     753     947 ..     753    1022 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00057
                  ECHHHHHHCCSS-T.......SEEEEES-SHHHHHHHHHHH CS
                  xxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 129 tldsaealklkllp.......krivvvGgGyiGvElAaala 162
                   +++a  +++++ +       k+++v+G+G+ G  +Aaal+
   KKY17024.1 732 QIAQAGTMHDHWERmkkrspiKSVAVIGAGASGAATAAALK 772
                  56667777777777777777788888888888888888764 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 2.2e-09
                  CSEEEE--SHHHHHHHHHHHH..HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.........................HHHHCHHHH.CCCC CS
                  xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxxx.xxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaq..agakvtlvelegtclnggcllskallgvaedaeias.........................evvkklnqg.iell 70 
                  k+v+viG+G+ G a+a  l++      + ++ ++++ ++g+c   +a++ + +d                                v++ + + +   
   KKY17024.1 753 KSVAVIGAGASGAATAAALKAedVFDTIRVF-ERRASPGGTCTNVPAIAMSFSDIPFPYgpfvphwipkqyianyfsahridlsL-VSNTTVEdVS-- 846
                  589******9999999999884235577777.66667777776655555544444422256669888766555555544444431.1111111133.. PP

                  HCCTCEEEEESCEEEEETEEEC........................TCEEEEEESEEEE---..EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T CS
                  xxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  71 lgeevvkidpgkkkvklekkke........................gdeekiaydklvlAtG..ssprdlgipGvaenvgklvrtldsaealklkllp 142
                                       +                        ++  k ++d+lv+A G  s p+ ++++G+  + +k+  +  s  ++ +  +p
   KKY17024.1 847 ---------------------KlpskppgldrwsltlrkndpvrgvDEWWKEEFDALVIANGhySVPFVPKVKGLDGYLQKF-PHRISHSKVYRTPQP 922
                  .....................13344444444444455555677886667889*********888999**999983333333.222222222233333 PP

                  ...SEEEEES-SHHHHHHHHHHHHH CS
                  ...xxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 143 ...krivvvGgGyiGvElAaalakl 164
                     kr++v+G+++ G +++a l k 
   KKY17024.1 923 ftnKRVLVIGNSASGHDITASLLKT 947
                  456**************99987665 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   1.5e-06    0.0025       2      36 ..     755     792 ..     754     810 .. 0.88
   2 ?    3.1   0.0     0.034        56     163     244 ..     862     920 ..     827     940 .. 0.67
   3 ?   -0.9   0.0      0.57   9.3e+02     188     271 ..     992    1090 ..     977    1125 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.5e-06
                 EEEECTSHHHHHHHHHHHHTT....EEEEESSSSTTSSG CS
         DAO   2 vviiGGGiiGlstAyeLarrg....Vtllekgdiagsga 36 
                 v++iG+G  G++tA +L ++     + ++e++  +g g+
  KKY17024.1 755 VAVIGAGASGAATAAALKAEDvfdtIRVFERRASPG-GT 792
                 99***************6665788********9999.54 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.034
                 EEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEE CS
         DAO 163 ilegtevtgleeedgkvwgverttpgendaadavVnaaGawsd.llgllkeldlpispvrgqvlvlkplseklvspaailpvp 244
                 ++++ +v+g++      w       +e   +da+V+a+G++s  ++       ++++++ g+   + p      s+ +++ +p
  KKY17024.1 862 LRKNDPVRGVD-----EWWK-----EE---FDALVIANGHYSVpFV-------PKVKGLDGYLQKF-PHRI---SHSKVYRTP 920
                 45555666663.....2333.....33...7**********85444.......4557777777776.3222...122334443 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.57
                  EEE.EEEEEEEE--GGGHH..HH.HTT....CTT.TSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSE..... CS
         DAO  188 gen.daadavVnaaGawsd..ll.gll....kel.dlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtad..... 270 
                  g++ + +d+v+ ++G  ++  ++   +    k++ d   s v g++l++   ++ +    ai  +p +   +rg+++ + +  rv +G +a+     
  KKY17024.1  992 GSVlTDIDHVIYCTGYKVSfpFWnT-HanggKPIwDYENSKVFGSYLHT-FFQDHPTL--AIVGLP-RFLTFRGFEYQAIAVARVFAGRNAEqipsk 1083
                  444445799******9999865543.43554444777778899999999.33332222..344444.556666766666666788888888876555 PP

                  ......E CS
         DAO  271 ......e 271 
                        e
  KKY17024.1 1084 eeqekwE 1090
                  4333321 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00095       1.5     181     225 ..     742     786 ..     715     790 .. 0.74
   2 !    8.8   0.0   0.00047      0.77     151     215 ..     881     949 ..     827     962 .. 0.76
   3 ?   -2.8   0.0       1.6   2.6e+03     329     341 ..     996    1008 ..     990    1009 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00095
  K_oxygenase 181 ylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtrs 225
                    er++++   k++aV+G+G S+a  +  l ++    +++++ r+
   KKY17024.1 742 HWERMKKRSPIKSVAVIGAGASGAATAAALKAEDVFDTIRVFERR 786
                  345555678889************999998887665666666655 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00047
  K_oxygenase 151 nlvlgvG..tepkiPev..lekle..gkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqk 215
                  +lv++ G  + p +P+v  l+ +     +r+ Hs+ y + +    ++kr++V+G   S+ +i+  ll++ k
   KKY17024.1 881 ALVIANGhySVPFVPKVkgLDGYLqkFPHRISHSKVYRTPQ--PFTNKRVLVIGNSASGHDITASLLKTVK 949
                  67777776678888886332322222237888888887766..89*********************99854 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.6
  K_oxygenase  329 levdavvlATGYr 341 
                   +++d v+++TGY+
   KKY17024.1  996 TDIDHVIYCTGYK 1008
                   689*********7 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00043       0.7       1      40 [.     756     792 ..     756     805 .. 0.86
   2 ?    1.1   0.0      0.22   3.5e+02      49      77 ..     835     863 ..     825     881 .. 0.82
   3 ?   -2.5   0.0       2.8   4.5e+03     142     155 ..     875     888 ..     861     889 .. 0.81
   4 ?   -1.5   0.0       1.3   2.2e+03     135     155 ..     986    1007 ..     979    1008 .. 0.80
   5 ?   -2.5   0.0       2.8   4.5e+03      94     106 ..    1031    1043 ..    1026    1045 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00043
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdp.sepgagr 40 
                    a++GaG++G+a++++L a+   +   +i +f++ ++pg g+
     KKY17024.1 756 AVIGAGASGAATAAALKAE---DVFDTIRVFERrASPG-GT 792
                    89**************999...5778999999966667.54 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.22
  NAD_binding_9  49 elllNvpasemslftddpptfaeWlrerg 77 
                     l  N++++++s ++ +pp +++W  + +
     KKY17024.1 835 SLVSNTTVEDVSKLPSKPPGLDRWSLTLR 863
                    5788********************76655 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.8
  NAD_binding_9 142 aslaadaVvLAlGh 155
                    ++ ++da+v+A Gh
     KKY17024.1 875 WKEEFDALVIANGH 888
                    46799********9 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.3
  NAD_binding_9  135 avlladgasl.aadaVvLAlGh 155 
                      ++ +dg+ l ++d+V+ ++G 
     KKY17024.1  986 SIVFSDGSVLtDIDHVIYCTGY 1007
                     567788988769********96 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 2.8
  NAD_binding_9   94 alyGrYlrdlfee 106 
                     +++G Yl+ +f++
     KKY17024.1 1031 KVFGSYLHTFFQD 1043
                     79********986 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011      0.18      19      56 ..     754     792 ..     739     801 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
                 EEEEE--SHHHHHHHHHHHHCTTS.-EEEEESSSS--TT CS
        Thi4  19 DvvivGaGssGLtaayylakkpdl.kvailersvspGGG 56 
                  v+++GaG+sG ++a  l  +  +  + ++er+ spGG 
  KKY17024.1 754 SVAVIGAGASGAATAAALKAEDVFdTIRVFERRASPGGT 792
                 699********99999998883443688*********96 PP

>> LPD11  Large polyvalent protein-associated domain 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   0.00024      0.39      11      44 ..     715     749 ..     708     750 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00024
       LPD11  11 lksDceyylgygn.rnekhLwagsveeqieemkel 44 
                 l++D+eyyl+    ++e+   ag+ +++ e+mk++
  KKY17024.1 715 LQTDMEYYLRDHSnHSEQIAQAGTMHDHWERMKKR 749
                 89********655277778899***********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.50
# Mc/sec: 7166.79
//
Query:       KKY17025.1  [L=267]
Description: hypothetical protein UCRPC4_g05751 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-05   23.4  10.6    0.00052   19.4  10.6    2.2  1  CorA      CorA-like Mg2+ transporter protein


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4  10.6   2.9e-08   0.00052     116     290 ..      18     241 ..       3     246 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.9e-08
        CorA 116 ldeivdrlfellekleeeldeledel..........edstkkeilrelaqlrrrlvklrralapnrevlkrllakaddkllddedkey....lrdllde 200
                 ld  + + +++l +l +e d     +           + ++++++++l+ l  ++ +   a+++++ev+++l a  +   + ++ +++    l++ l++
  KKY17025.1  18 LDNAISNWRPYLLDLQAESDLHVAAIlgatpddsgpIRMSNAGERQSLMVLDGKVLNSLAAVKHTKEVVSALSAAYNSASEGSTSSNNiniaLSEKLSD 116
                 555555555555555555555555555555555555555666777777777777777777777777777666553333333333333311123333333 PP

        CorA 201 lerllemlealrerleslqdtyssllser...................................lNrvmkvLTvltaiflPlTlitGiyGmNfkglPel 264
                 l+ l+ +l+++r  ++ ++++ s+ l+ +                                       +kvLT+lt i lP+T+++ ++   f g   +
  KKY17025.1 117 LDILSLKLQTMRTTIQGISNLVSNFLDLNsgyalqelaresrreneemrklsermhrlaekstqDAASVKVLTILTLIYLPATVVSNFFSTSFVGTGSN 215
                 333666777777777777777777777777777777888888888888888888888888887677889**************************999* PP

        CorA 265 ewsygypfvlllglmallailllfwf 290
                 e+ +++p +++++++a++ ++ ++++
  KKY17025.1 216 EHIFVTPDWWIFLVAAVALTAFTLYV 241
                 ****9999998888888776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1690  (0.0942607); expected 358.6 (0.02)
Passed bias filter:                      885  (0.0493614); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.51
# Mc/sec: 1576.95
//
Query:       KKY17026.1  [L=295]
Description: putative formyltetrahydrofolate deformylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-38  132.8   0.1    1.4e-38  132.4   0.1    1.1  1  Formyl_trans_N  Formyl transferase
    3.3e-10   39.6   0.0    9.6e-10   38.1   0.0    1.8  2  ACT             ACT domain
      2e-06   27.7   0.0    5.1e-06   26.4   0.0    1.8  1  ACT_6           ACT domain


Domain annotation for each model (and alignments):
>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.4   0.1   2.4e-42   1.4e-38       2     181 .]     100     276 ..      99     276 .. 0.96

  Alignments for each domain:
  == domain 1  score: 132.4 bits;  conditional E-value: 2.4e-42
                     EEEEEESESSHHHHHHHHHHHHTTSECEEEEEEESCTTEHCHHHHHHCCHCCCECHHCCSCCCCCCCHHHHHHHHCTT-SEEEEES--S---HHH CS
  Formyl_trans_N   2 kivvlisgtgsnlqalldalkkgsleadvvlvvsnkdkaaglekaeaasiptkvfeekkleprsqfeeelaeelkelkadlivlagymkllpkel 96 
                     ++++++s+ g++l++ll ++++++l  +v ++vsn+++ a    a++ +ip++ +     + + q+e ++ + +ke + dlivla ym++l+++l
      KKY17026.1 100 RVLIMVSKIGHCLNDLLFRQSSNQLPIEVPVIVSNHPDFA--PLAASYKIPFHHLPVTA-DTKDQQETQILNLVKENNIDLIVLARYMQVLTPNL 191
                     89*************************************9..88999*****9998765.6666999**************************** PP

                     HHSSTTSEEEEESSSTTTTBSS-HHHHHHHTTSSEEEEEEEE--SSSSTS-EEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHH CS
  Formyl_trans_N  97 vqavrlkilniHpSLLPrfkGaaaiqraleaGdketGvtihfvdeelDtGailaqkkveiiaedtkeeleqrvadaehkalveal 181
                      +++++ki+niH+S+LP+fkGa+++++a+ +G+k  G+t hfv+ +lD+G+i+ q   ++++  + +el+q   ++e+++l  a+
      KKY17026.1 192 CSEMSGKIINIHHSFLPSFKGAKPYHQAYDRGVKIIGATAHFVTKDLDEGPIIEQRVARVDHSMSPKELTQEGSNVESQVLAAAV 276
                     *******************************************************************************998775 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   1.6e-13   9.6e-10       2      63 ..      16      76 ..      15      79 .. 0.90
   2 ?   -3.4   0.1       1.5   8.9e+03      16      28 ..     165     177 ..     165     178 .. 0.82

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 1.6e-13
                EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHH CS
         ACT  2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealk 63
                +l +++pDrPG+ ++v+g+la+ ++Ni   +q+s+  +  ++++ v+ + +  ++  le+l+
  KKY17026.1 16 ILTLSCPDRPGIVHAVTGLLAKKNLNILDSQQFSDPTS-EKFFMRVHFGQQGKDPLDLEQLQ 76
                57789******************************998.88888899888888888888886 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.5
                 HHHHHHHHTTSEE CS
         ACT  16 rvfgaladrgiNi 28 
                 ++++++ +++i +
  KKY17026.1 165 QILNLVKENNIDL 177
                 5899999999986 PP

>> ACT_6  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   8.6e-10   5.1e-06       3      75 ..      15      92 ..      13      93 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 8.6e-10
       ACT_6  3 llitvtGpdrpGltasLtsvlaefgvnilDieqavihgrlsLgllvsgp...ed..alarlekaLlflakelgltvef 75
                +++t++ pdrpG++ ++t++la+ + nilD++q    ++  + ++v      +d  +l++l+ +++ l+ el +++++
  KKY17026.1 15 FILTLSCPDRPGIVHAVTGLLAKKNLNILDSQQFSDPTSEKFFMRVHFGqqgKDplDLEQLQPDFSALSIELNMDFDV 92
                7899*****************************998888888888888777733458999999999999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1884.64
//
Query:       KKY17179.1  [L=222]
Description: putative cutinase precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-41  141.3   6.1    7.1e-41  140.1   6.1    1.5  1  Cutinase  Cutinase


Domain annotation for each model (and alignments):
>> Cutinase  Cutinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.1   6.1     4e-45   7.1e-41       1     176 [.      37     212 ..      37     214 .. 0.93

  Alignments for each domain:
  == domain 1  score: 140.1 bits;  conditional E-value: 4e-45
                 ---SEEEEEE--TT--TTT.SSHHHHHHHHHHHH.TTT-EEEEE------CGGSTTSS-HHHHHHHHHHHHHHHHH-TT-EEEEEEE.........THH CS
    Cutinase   1 sckdvevifArgttepggl.gsvGeavvsalesavgsksvavqgvnYpAdleqlyegseeagakeaaalvqslaskCPdtkivlgGY.........SqG 89 
                 sc++++vifArgt+e+g+l + vG+ + sales vg+++v+v gv Y+Ad+++++eg+++ g+ ++a +v+++++ CPd+++v++GY         SqG
  KKY17179.1  37 SCAEYIVIFARGTSETGTLgSIVGPPLQSALESLVGASNVNVTGVSYDADVAGFLEGGDSTGSTTMADMVTEAVADCPDSNVVMSGYrsltfhptySQG 135
                 6******************6668***************************************************************5555555555*** PP

                 HHHHHHHHTT.....S-HHHHHHEEEEEEES-TTCCCCTTS-TTS-GGGEEEE--TT-GGG.TS----GGGG-GGGG.HHHHHHHHHH CS
    Cutinase  90 aqvidnaieggatatlpaavadkvaavvlfGdpsnvaglpevsklyaskikslCdagDpiC.gsgneleaHlsYvseyttqaakFvvs 176
                 aq+++na+++     ++a++a++v+++v fGdp+n +++ +++k      k +C++gD+iC g+++  +aHlsY+s+ +++aa+F+vs
  KKY17179.1 136 AQLVHNAASQ-----ISADTASQVSSAVTFGDPDNPDAVAQIDK-----QKIYCASGDNICeGGVIISTAHLSYGSN-ASDAADFIVS 212
                 **********.....***********************999977.....778*********777788899*******.99******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1478.40
//
Query:       KKY17180.1  [L=480]
Description: putative sarcosine oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.8e-33  114.5   0.0    9.4e-33  114.2   0.0    1.1  1  DAO            FAD dependent oxidoreductase
    0.00072   18.9   0.0          1    8.6   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0022   18.2   0.0     0.0071   16.6   0.0    1.9  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
       0.15   11.3   0.0       0.23   10.7   0.0    1.3  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
       0.17   11.2   0.0       0.27   10.6   0.0    1.2  1  ThiF           ThiF family
       0.18   11.8   0.0        1.8    8.5   0.0    2.1  2  NAD_binding_9  FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.2   0.0   3.1e-36   9.4e-33       1     351 [.      14     428 ..      14     429 .. 0.65

  Alignments for each domain:
  == domain 1  score: 114.2 bits;  conditional E-value: 3.1e-36
                 EEEEECTSHHHHHHHHHHHHTT...EEEEESSSSTTSSGGGSSEEEEESSS.........STHHSTHHHHHHHHHHHHHHHHHH........HHHSST. CS
         DAO   1 dvviiGGGiiGlstAyeLarrg...VtllekgdiagsgaSgrnsgllhsgl.........rylpeaselarlslealeelrele........eelgid. 78 
                 ++++ G+G++GlstA++Lar     +t+l+++ +++   S + +  + s+          +y  e  e+ rl++ea  ++ e++        +elg + 
  KKY17180.1  14 KILVLGSGVFGLSTALWLARSSytdITVLDMQ-DLA-SKSYNPGLGIDSASadinkiirfSYGTEI-EYQRLAFEAAGMWNEWNrdkekelgRELGEQe 109
                 599***************9987899*******.655.55555554444433233333322112222.66699999998887777333322222233332 PP

                 TSEEEEEEEEEESSHHHHHHHH......................HHHHHHHHTTTTEEEEEHHHHHHHSTTST...TTSEEEEETTEEEEEHHHHHHHH CS
         DAO  79 idyrrtGllslaadeeeleald......................kllallleagldaelldaeevrelepalp...gllgalfypdtgqvdpakltaal 152
                   + ++G+l + a e e+ +++                      + +++++e g   + ld+  + +     +   g+++a+++ ++g v ++k + + 
  KKY17180.1 110 KLWFNSGMLRMSAVE-EFGEFElrtlenmekegirdeqfrsdydDDIKRATERGWA-HKLDP--CCR-----KersGYHKAVLDSTAGYVAAYKSCDWA 199
                 668888888887643.2333323333333333333333333333444444444443.24555..222.....13349********************** PP

                 HHHHHHTT-EEEESECEEEEEE.....EETCEEEEEEECT.EEEEEEEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEE.EECCTHSTGSGCSEEE CS
         DAO 153 araaealGveilegtevtglee.....edgkvwgverttp.gendaadavVnaaGawsd.llgllkeldlpispvrgqvlvl.kplseklvspaailpv 243
                 +++ae +Gv++++  +v+g        e+++  +v  +t+ g+++ ad +V+a+G w+  ll   +e  + ++ + g++ ++  p+++k ++++  +p+
  KKY17180.1 200 RQRAEGAGVKFVLD-PVKGKAVglgrsEENGKPTV--KTAdGQVHVADLIVVACGGWTPsLL---PECSHILETTAGSIGTIqLPKDRKDLWER-FAPE 291
                 *************9.99885233333333344777..7777999777************877...65566669999999777334444555553.3333 PP

                 EE.....EEETTTTEEEEEETTSE.EEEEESSE.....................EETTCSSTSCSHH..........HHHHHHHHHHHHSGGGCG..EE CS
         DAO 244 pe.....tdddgrgvyvtprkdgr.vlvGgtad.....................eesgdddpevdee..........didellealrklfPqlgd..vl 303
                  +      + +g g+y +pr +++ +++G  ++                                             +++++e+++  +P+l +  ++
  KKY17180.1 292 NFpvltwGIKEGMGIYSFPRDENGiIKIGYRGTkftnfddvngghrmsvpktahV-----------TekketnipmiSLEAMREYISVNLPELLPlgLS 379
                 33557798889********966662568999986666666666555554433331...........033334444447777888888888997442255 PP

                 EEEEEEEE.ETTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHHH CS
         DAO 304 rkwaGlrp.lpdglpligetpgvkglylatGhsghGltlapatGkllae 351
                 ++  + ++   d+ ++i+ +pg +g+ +++G sghG+++ p  G+ +++
  KKY17180.1 380 STKLCWYTdSIDNSFVIDYVPGRSGVAVCSGGSGHGFKFLPILGREVVK 428
                 55555555358********99999*********************9875 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00047       1.4       2      30 ..      14      43 ..       7      79 .. 0.71
   2 !    8.6   0.0   0.00034         1     187     237 ..     197     252 ..     190     276 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00047
                 SEEEE--SHHHHHHHHHHHH.HTS-EEEEE CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaq.agakvtlve 30
                 +++v+G+G+ Gl++al la+ +  ++t+++
   KKY17180.1 14 KILVLGSGVFGLSTALWLARsSYTDITVLD 43
                 566777777777777777774455566654 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00034
                  HHHHHHHHHTTEEEEESCEEEEEEETTE.....EEEEEETTSCEEEESEEEE-S-E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 187 aaleealekeGvevklgtsvkeidgnge.....klevvledgeeidadlvvvavGv 237
                  ++++++ e  Gv+++l  +  ++ g g+     k +v++ dg++  adl+vva G 
   KKY17180.1 197 DWARQRAEGAGVKFVLDPVKGKAVGLGRseengKPTVKTADGQVHVADLIVVACGG 252
                  6788899999*****999999999999877755555*****************974 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.4e-06    0.0071       1      29 [.      17      46 ..      17      81 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.4e-06
                   EE--SHHHHHHHHHHHCCTE.EEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagf.dvlllekrd 29
                   ++G+G++Gl++A  La+  + d+++l+++d
     KKY17180.1 17 VLGSGVFGLSTALWLARSSYtDITVLDMQD 46
                   89***************98879******97 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.8e-05      0.23      28      63 ..      12      48 ..       1      68 [. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.8e-05
                 --EEEEESTSHHHHH.HHHHHHHTT-EEEEEESSHHH CS
  AlaDh_PNT_C 28 pakvlviGgGvaGlq.AiatakglgakVtvlDvrpar 63
                  +k+lv+G Gv Gl+ A++ a++   ++tvlD++  +
   KKY17180.1 12 DSKILVLGSGVFGLStALWLARSSYTDITVLDMQDLA 48
                 689**********964889*************98655 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     9e-05      0.27      18      51 ..      12      45 ..       9      67 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9e-05
                TSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESS CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 18 dskvllvGaGglGsellknLalsGvgkltlvDnD 51
                dsk+l++G G  G   +  La+s    +t+ D+ 
  KKY17180.1 12 DSKILVLGSGVFGLSTALWLARSSYTDITVLDMQ 45
                69******************************95 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.18   5.5e+02       2      36 ..      17      47 ..      16      55 .. 0.80
   2 ?    8.5   0.0   0.00061       1.8     112     154 ..     207     251 ..     193     252 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.18
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsep 36
                   + G G+ Gl+++  L++++     ++it+ d + +
     KKY17180.1 17 VLGSGVFGLSTALWLARSS----YTDITVLDMQDL 47
                   679*************995....888888887655 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00061
  NAD_binding_9 112 pegvtvevhraevvdleeradgq..avlladgaslaadaVvLAlG 154
                      ++ ++ +++++v l +++++   +v +adg+ + ad +v+A+G
     KKY17180.1 207 GVKFVLDPVKGKAVGLGRSEENGkpTVKTADGQVHVADLIVVACG 251
                    44556667899999998877664369******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 2968.18
//
Query:       KKY17181.1  [L=373]
Description: hypothetical protein UCRPC4_g05674 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2412.80
//
Query:       KKY17182.1  [L=1055]
Description: putative thermophilic desulfurizing enzyme family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-23   83.4   0.2    3.2e-23   82.7   0.2    1.3  1  Abhydrolase_1  alpha/beta hydrolase fold
      8e-13   48.8   0.3      8e-13   48.8   0.3    1.7  2  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
    5.1e-10   39.0   0.1      1e-09   38.0   0.1    1.4  1  Hydrolase_4    Serine aminopeptidase, S33
    1.6e-06   28.9   0.2    4.5e-06   27.4   0.2    1.8  1  Abhydrolase_6  Alpha/beta hydrolase family
      5e-05   23.5   0.5    0.00013   22.2   0.5    1.6  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    9.6e-05   23.0   0.1    0.00024   21.7   0.1    1.6  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    0.00025   21.2   0.0    0.00074   19.7   0.0    1.8  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
  ------ inclusion threshold ------
       0.16   12.0   0.0       0.34   10.9   0.0    1.5  1  CBF            CBF/Mak21 family


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.2   1.4e-26   3.2e-23       4     154 ..     491     641 ..     488     683 .. 0.88

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 1.4e-26
                    EEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEE.EEEETHHHHHHHHHHHHHGGGE CS
  Abhydrolase_1   4 vilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddklt.lvGhSmGGmialayaaeyperV 98 
                    ++lhG+pg+s +     + + ++ + ++v+++D+rG+g+S+p+++ +n   +t ++  d++ ++++lg+ ++  + G+S+G+++++ ya+ +pe+V
     KKY17182.1 491 LFLHGGPGGSISKDS--VTSFFNPQVYRVVAFDQRGCGRSTPRSELRN--NTTQHLVQDIETLRQHLGINQWFlVFGGSWGSLLSFVYAQTHPESV 582
                    89******8877666..77788888*********************55..78899***************************************** PP

                    EEEEEESE...CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHH CS
  Abhydrolase_1  99 kalvllga...idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqr 154
                     +++l g      + +++   +   a  + d  + ++    r  + +l+a +++  ++ 
     KKY17182.1 583 GSMILRGIfaaRKWEFDWFYQAGGGATVYADRYEAFRDHIPREEQHDLVAAYHKRFHSA 641
                    **************************999999999999999999988888888877665 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.3   3.6e-16     8e-13       2     129 ..     269     409 ..     268     413 .. 0.90
   2 ?   -3.4   0.1       4.9   1.1e+04     115     133 ..     538     556 ..     534     557 .. 0.79

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 3.6e-16
                    HHHHHHHHHHHHHHHHHHHHHHHHHC.....TTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHH...... CS
  Acyl-CoA_dh_2   2 giaavalGaAraalaefvelarervr.....assgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearra...... 86 
                    +++ + +G+A +al  + +++ + +r       ++ek++d+ ++  + +  +a l AA+al  +a + + ++  +++e+ ++++a+ r +      
     KKY17182.1 269 VFSNFYIGIALGALTYASKYTVANTRpwpfgGDNKEKATDEFYILERYGSFKAHLLAAEALADKAGSVIANIYTTKSENRASLTARERGEaaewva 364
                    788999***********9999988888899889999************************************888888877777776666668899 PP

                    ..HHHHHHHHHHHHHHHHHHCGGGGGBTT-HHHHHHHHHHHHCTS CS
  Acyl-CoA_dh_2  87 ..aalavelaiaavdalfeaaGgsalrkesplqRlwRDahaaaaH 129
                      +++a++ a +++  +fe++G++a+  +  l+R+wRD+++ + H
     KKY17182.1 365 svKIVATDVALEVTAGVFEVTGARATSVKVGLDRFWRDVRTHTLH 409
                    99***************************************6666 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.9
                    HHHHHHHHHHHHCTSGGG- CS
  Acyl-CoA_dh_2 115 plqRlwRDahaaaaHaaln 133
                      q l  D++++++H ++n
     KKY17182.1 538 TTQHLVQDIETLRQHLGIN 556
                    56677789*******9887 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.1   4.6e-13     1e-09       9     111 ..     492     592 ..     489     619 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 4.6e-13
  Hydrolase_4   9 lvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse.gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvagli 105
                  ++HG    s   + ++  ++ q + v+a+D+rG Grs      + + ++++v+D++++ +++     ++ + ++G S+G+l+++ y++++p++v  +i
   KKY17182.1 492 FLHGGPGGSISKDSVTSFFNPQVYRVVAFDQRGCGRSTpRSELRNNTTQHLVQDIETLRQHLG---INQWFLVFGGSWGSLLSFVYAQTHPESVGSMI 586
                  56777777777788899999999**************944455788999*********99998...667799************************** PP

  Hydrolase_4 106 lsaPal 111
                  l + + 
   KKY17182.1 587 LRGIFA 592
                  987665 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.2     2e-09   4.5e-06       2     173 ..     491     690 ..     490     738 .. 0.57

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 2e-09
                    EEE--GC........GCHHHHHHHHCCT.CEEEEE--TTSTS-GGCS--HHH......CHHHHHHHCCTT..TTSE..EEEEETCHHHHHHHHHHC CS
  Abhydrolase_6   2 lllHGagss...assWlvapLaallaag.vhvlapDlpGhGrsdpppldled......ladlaalldelaagggpv..vlvGHSlGGalalaaapl 85 
                    l+lHG++++   +      ++  +++ + ++v+a+D +G+G +++p  +l++      ++d++ l ++l   g +    ++G S+G +l+     +
     KKY17182.1 491 LFLHGGPGGsisK---D--SVTSFFNPQvYRVVAFDQRGCG-RSTPRSELRNnttqhlVQDIETLRQHL---GINQwfLVFGGSWGSLLSFV---Y 574
                    89***77653331...2..3322233344899*********.666666666655555567778888888...444488*********96666...4 PP

                    C............EEEEES-..----TTT..........S----TTHHHHHHTT-C.......CCCHCCH.........S-HSCCCCHHHCCCCHC CS
  Abhydrolase_6  86 a..........lvvgvlldppptalpagl..........laaalelllallallrl.......lawlsre.........plprlfladedadaawr 145
                    a          +++g++ +     + +++           a++ e ++  ++   +       +a+++r          +++r++ a e    + +
     KKY17182.1 575 AqthpesvgsmILRGIFAAR---KWEFDWfyqagggatvYADRYEAFRDHIP---ReeqhdlvAAYHKRFhsadpeikaAAARSWSAWEL--STGT 662
                    44456777777667777777...44444444433332222222222221111...11122222333332221113333333334444333..4444 PP

                    HCCCGHHHHCCHHCHTTCCHHTT-TTGC CS
  Abhydrolase_6 146 arlarlaallaglgllpaaawadlpvpl 173
                      ++++ +l+  ++++ a+ +a++ +++
     KKY17182.1 663 LHFDPAVQLALLDEENFADTFAGMETHY 690
                    4445555555555566677777776666 PP

>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.5   5.6e-08   0.00013      42     132 ..     318     407 ..     311     410 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 5.6e-08
                    -CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHH CS
  Acyl-CoA_dh_1  42 afgkplidhqlvreklaemaaeleaarllvyraaealdagkpdraeasmaKlfaselaqevadlamqllGgaGyleeypverlyrdarvlr 132
                    +f+ +l++ +++++k +++ a++  +++ +++   a ++g+ +   ++ +K++a+++a ev++   ++ G+++++   +++r++rd+r+ +
     KKY17182.1 318 SFKAHLLAAEALADKAGSVIANIYTTKSENRASLTARERGEAA-EWVASVKIVATDVALEVTAGVFEVTGARATSVKVGLDRFWRDVRTHT 407
                    689999*****************************99999999.888899**************************************987 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   1.1e-07   0.00024       5     105 ..      37     135 ..      33     142 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.1e-07
                    HHHHHHHHHHHHHHTHHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHHHS-HH CS
  Acyl-CoA_dh_N   5 ealrdtvrefaeeelaphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslvapailrfGtee 100
                    +++ ++++e+a + la+ +   d+e+++p + +  l+  Gll +  p +ygG +  +  a  v+ e+a++d +l+++lg h  l +++    Gt e
     KKY17182.1  37 KEWIERAAEVA-KILAEDVGVRDREQKIPTAEVSLLKSSGLLKLLGPAKYGGGEQPWDIAYKVIREVAKGDGSLGMVLGYHL-LWSWTANVVGTLE 130
                    55555555543.345566777788889**999********************997666777899************999997.667999******* PP

                    HHHHH CS
  Acyl-CoA_dh_N 101 qkrry 105
                    q++r 
     KKY17182.1 131 QQERV 135
                    **996 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.3e-07   0.00074      21      96 ..     159     231 ..     147     232 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.3e-07
                    EEETT.EEEEEEEEEEEETTTT-SEEEEEEETS-------EEEEEEE..GGGEEE-----BSS-TTS-EEEEEEE. CS
  Acyl-CoA_dh_M  21 aerdggeyvlnGeKiwitnaaiatlalvlartekpdrarglslflvprdapgvsvrrieeklGlrglptgelvfed 96 
                    ++ dg+++v +G K++ t++ i++l+++ +    +d ++ + ++l p+++pg+++ + ++++Glr +++g + +e 
     KKY17182.1 159 IKSDGDHIVFDGFKNFNTGGVISDLLVLEGV--YED-TNAHIFALAPTKQPGLQFAHNWNNIGLRLTESGSVKIEG 231
                    7899999************************..666.5666688999*********************99998876 PP

>> CBF  CBF/Mak21 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00015      0.34      98     168 ..     578     671 ..     565     672 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
         CBF  98 hppklkalle............................ekfkdvkeeeeeekkeekkkskaesgvYdptkrdpeysnaeasslwElsllakhfhPtVal 168
                 hp+++++++                             e f+d+   ee+++       +a ++ +  ++ +++ + a + s wEls+ + hf P+V+l
  KKY17182.1 578 HPESVGSMILrgifaarkwefdwfyqagggatvyadryEAFRDHIPREEQHD-----LVAAYHKRFHSADPEIKAAAARSWSAWELSTGTLHFDPAVQL 671
                 6666667776777777777777777777777777766666666666543322.....2344478899988999************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1055 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 7052.75
//
Query:       KKY17183.1  [L=408]
Description: putative ncs1 allantoate transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-67  227.0  21.2    4.5e-67  226.7  21.2    1.0  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.7  21.2   2.5e-71   4.5e-67     114     440 .]      24     359 ..      21     359 .. 0.96

  Alignments for each domain:
  == domain 1  score: 226.7 bits;  conditional E-value: 2.5e-71
  Transp_cyt_pur 114 lmlgkifgkwleigg...ailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaegGpvldkavklgkse...l 202
                     +ml  i++++ +i++   ++ ++++ ++++ fi+ vv l++ + +++k+r +f+i+++++p+a f++l +++ +++g +++  + +l  s+    
      KKY17183.1  24 SMLYAIWPSFRNIPNhlpKSANITTGFMICYFIYFVVVLPFHWIPPHKVRWVFTIKSIITPIAGFAILGYLVHATGGNKIFTFGNELKGSAlgwG 118
                     6999*************99**********************************************************999997777775557888 PP

  Transp_cyt_pur 203 flsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakfdet...agvllililvala 294
                     f+++v++++++fatl +n+ DF+ry k++ks  +iql+++p++f +++++g+++a ++k++yg+  w+pl+i+ ++ +    a+ ++ +  + +a
      KKY17183.1 119 FMNGVNAMIGNFATLGVNMNDFARYSKKPKSP-LIQLIVIPVVFLMMMIFGVVGANGSKILYGELLWDPLEIVDHWTSKggrAAAFFCAAAFFIA 212
                     ****************************9987.69************************************************************ PP

  Transp_cyt_pur 295 qlgvnisanllsagldlaallPkkinikrgsliaavi.alvivpwkllssssklftaflsllavflspvagviiadyfvvrrgylklaalytrrr 388
                     ++++nisan+++ + dl+al+P++ini+rg +i+a i a + +pw+ l s+++  ++f++ ++v l p+  v+i dy++v ++ +++ +ly+  +
      KKY17183.1 213 NIAINISANSIAVAVDLSALAPRYINIRRGQYICAFIgAWALTPWNILVSADS-LLTFMDGYSVWLAPISSVLICDYYFVHHRLVAVHELYR--P 304
                     ***********************************9944689***********.999***********************************..* PP

  Transp_cyt_pur 389 gsaYwy.rkgvNwravaayivGiaaglvgvagsvg..ikvvkgaeklfdlsylvG 440
                      + Y y + g+Nwr  +a++vG a+ l+g+a +v   i+v+ ga  l+dl+y+ G
      KKY17183.1 305 HGVYAYeKWGTNWRSAVAFVVGFAPLLPGFANAVTssISVSTGAIHLYDLGYFYG 359
                     ******8889*********************999999***************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 2569.27
//
Query:       KKY17184.1  [L=670]
Description: hypothetical protein UCRPC4_g05677 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-49  166.0   0.1    7.9e-49  165.3   0.1    1.3  1  Adenine_deam_C  Adenine deaminase C-terminal domain
    1.4e-18   67.3   0.0    6.5e-18   65.2   0.0    2.1  1  Amidohydro_1    Amidohydrolase family
    3.5e-14   53.2   0.1    5.5e-06   26.1   0.0    2.3  2  Amidohydro_3    Amidohydrolase family


Domain annotation for each model (and alignments):
>> Adenine_deam_C  Adenine deaminase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.3   0.1   1.3e-52   7.9e-49       8     168 ..     446     607 ..     441     608 .. 0.95

  Alignments for each domain:
  == domain 1  score: 165.3 bits;  conditional E-value: 1.3e-52
                     EEEEEEETTEEE-..-TTEEEEEEE--SSSS--EEEEEEESS--BSSEEEES--TTT--EEEEESSHHHHHHHHHHHHHTTSEEEEEETTEEEEE CS
  Adenine_deam_C   8 evelpvkdgvvvadlekdllkiavveRhgktgnvgvgfvkgfglkkgAiAssvahDshniivvGtndedmalAvnrvielgGGivvvedgkvlae 102
                     +++ + k+g++++++  d+lk++v++Rh++t n g+gfv+gfgl+kgAiA + + +++n++vvGt+de++a Av+ ++elgGG+++v+dg+vl +
      KKY17184.1 446 RLSTDEKHGHITCNTTLDVLKVVVIDRHHATPNRGIGFVRGFGLQKGAIACTTNCENQNLVVVGTSDEEIAFAVRSIVELGGGFIAVSDGNVLGS 540
                     55667788999************************************************************************************ PP

                     EE-TBTTTBBSS-HHHHHHHHHHHH.HHHHTTS-TTTBSGGGGGSTT-TTSSSEEEETTSEEETTTT CS
  Adenine_deam_C 103 lpLpiaGlmSdepaeevaekleele.aalkelgvkledpfmtlsflalpviPelkltdkGlvdvkkf 168
                     ++L +aG mS++p e v ++  el+  + ++lg+++++pfm  sf+ l  +P+l +t+kGlvd+k++
      KKY17184.1 541 VKLDVAGCMSSAPWEVVRDTSLELDrVVEEQLGCTMHAPFMIASFIGLVGVPDLGITEKGLVDCKTQ 607
                     *************************566666*********************************985 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   1.1e-21   6.5e-18       1     344 []      91     381 ..      91     381 .. 0.78

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 1.1e-21
                   EEEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH...............HHHHHHHHHHTSSSE.EEEEE CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattst...............giealleaaeelplg.lrilg 81 
                   ++ PG+ID+H+H+e + l         vp+e a+  + +g+++ l +   +++  g +  +               +++  ++ ++++p+g ++i++
    KKY17184.1  91 FISPGFIDSHIHVEYTKL---------VPGELARLSVPRGTTAVLADANCIANVLGPKGMDfmgkflcqqgsqtttPLRIFRQISHKVPQGsPEIEL 178
                   689***********9999.........*****************************98666666666666666665555555555555444334444 PP

                   ESSEGGSGCCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHH.HHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETTTT CS
  Amidohydro_1  82 gkvsldrgsaetskasreklkagaaetikgkadgvvkvalapheapafsdeelkealk.eakkrdlpvaiHaletkgevedaeaafgetiehgthle 177
                   g      g a +  +++e++ + +             ++l+++ ++++  ++ ++  + +a ++++ ++ H++ +++e  +a aa+g +  h    +
    KKY17184.1 179 G------GAAVSTAELCERVSQSE------------AATLGESNPFSL--DLASAQKQaAALHAGKRITGHTALLRNEPLWAYAAGGISDDH--NAH 253
                   4......77777888888887775............266677766666..55555555145555********88888888999999944444..555 PP

                   STCCHHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHHTSC.EEEEEECT........TSSCCGGHHHHHHHHH CS
  Amidohydro_1 178 vaeslglldeiklilahgvhltpteaellkerlkeagvahcpfsnsilrsgrealrkaldeGvk.vglgtDga........asgnslnlleelrlal 265
                   +      ++++   l  g  lt++          +++++          +g++    + ++G++ ++++ D+         ++++       +r a+
    KKY17184.1 254 R------PEDVLERLRLGLMLTVM-------S--GSMNS--------NIPGVFSDIALYKDGLNhMSFCADDKlaedldaqGHIDYH-----VREAI 322
                   5......4446777********66.......2..66666........6788888899999999999999997777777555555555.....99999 PP

                   HHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSEEEEEEEETTEEE CS
  Amidohydro_1 266 klqrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaafvglkkdgnvkkvivkGklv 344
                              + gls+++a+r+aT+n+A +++ld+ +Gsi++ k ADl ++          + kd ++ +viv+G +v
    KKY17184.1 323 -----------KRGLSPLQAYRIATLNPAAYYRLDHLIGSITPAKLADLLIL---------DDLKDVKPSMVIVNGAIV 381
                   ...........899**************************************.........9999***********886 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   9.1e-10   5.5e-06       1      34 [.      83     117 ..      83     143 .. 0.70
   2 !   24.8   0.0   2.3e-09   1.4e-05     404     472 ..     322     381 ..     305     382 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 9.1e-10
  Amidohydro_3   1 eviDakGrlvlPGFvDsHtHlagggvnl.rllrlp 34 
                   ++iDakG++  PGF+DsH+H+  +++    l+rl+
    KKY17184.1  83 KEIDAKGKFISPGFIDSHIHVEYTKLVPgELARLS 117
                   58******************555442222333333 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 2.3e-09
  Amidohydro_3 404 pdeelsleealalyTrgpAkalgledrkGtLevGadADlvvldadpldvdppelaearvrltvvdGrvv 472
                   +++ ls  +a +  T +pA+ ++l++  G++ + + ADl +ld d+ dv+p+        +++v+G +v
    KKY17184.1 322 IKRGLSPLQAYRIATLNPAAYYRLDHLIGSITPAKLADLLILD-DLKDVKPS--------MVIVNGAIV 381
                   67899*************************************7.99999986........9*****999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.36s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 4064.27
//
Query:       KKY17185.1  [L=352]
Description: hypothetical protein UCRPC4_g05678 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.047   12.8   2.4      0.067   12.3   2.4    1.1  1  VP7       Glycoprotein VP7


Domain annotation for each model (and alignments):
>> VP7  Glycoprotein VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.4   3.7e-06     0.067      12      71 ..     284     345 ..     273     349 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.7e-06
         VP7  12 v.liliilliyilksltrkmdflitdtli..vililseflraqnytidlyitGsvetaiinst 71 
                 + +i+ii l yi ks++r ++ li+  ++   + ++s+  ra  ++  l ++G    +++ st
  KKY17185.1 284 LpAISIIALFYIQKSIVRLIFILIFSAVFsaCMSVFSNADRAGIFSASLALAGVQS-VFVGST 345
                 258**********************9988334567889999999999999998544.477777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 2182.68
//
Query:       KKY17186.1  [L=325]
Description: hypothetical protein UCRPC4_g05679 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 2061.69
//
Query:       KKY17187.1  [L=401]
Description: putative outer membrane autotransporter barrel protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        0.1   13.2   0.0        8.3    7.1   0.0    2.5  2  Asp_protease_2  Aspartyl protease


Domain annotation for each model (and alignments):
>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0    0.0062   1.1e+02       9      24 ..      73      88 ..      62     103 .. 0.83
   2 ?    7.1   0.0   0.00046       8.3      11      31 ..     283     303 ..     266     326 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0062
  Asp_protease_2  9 pvrfllDTGasttlis 24
                    +++ ++DTG++++l+ 
      KKY17187.1 73 TFHPMVDTGSTGILLG 88
                    77889******99986 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00046
  Asp_protease_2  11 rfllDTGasttlispelaekl 31 
                     +fllDTG ++++++ + a+ l
      KKY17187.1 283 SFLLDTGIDHSYVTLTDAAGL 303
                     8************98877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 2391.51
//
Query:       KKY17188.1  [L=562]
Description: putative gmc oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-44  152.5   0.1      1e-26   94.0   0.0    2.7  3  GMC_oxred_N    GMC oxidoreductase
    8.3e-32  110.7   0.1    1.3e-31  110.1   0.1    1.3  1  GMC_oxred_C    GMC oxidoreductase
     0.0029   17.2   0.2      0.035   13.7   0.1    2.5  3  DAO            FAD dependent oxidoreductase
      0.004   16.3   0.1     0.0059   15.7   0.1    1.2  1  Lycopene_cycl  Lycopene cyclase protein
     0.0068   16.6   0.8      0.016   15.4   0.1    2.1  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.018   14.2   0.3        0.6    9.1   0.1    2.4  3  FAD_binding_2  FAD binding domain
      0.068   12.4   0.5       0.17   11.1   0.1    1.8  2  Thi4           Thi4 family


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   2.4e-18   6.2e-15       1      92 [.      11     104 ..      11     108 .. 0.87
   2 !   94.0   0.0   3.9e-30     1e-26     133     295 ..     114     277 ..     106     278 .. 0.87
   3 ?   -1.5   0.0      0.51   1.3e+03     161     191 ..     461     498 ..     418     525 .. 0.64

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 2.4e-18
  GMC_oxred_N   1 vdelveggGsagsvvAaRLsedpstsvlvleaggreknrl.imvlalalklidk.klntayetepekalngrrlilpaGktlGGgsvvNwsayi 92 
                  +d++v ggG+ g+vvA+RLsedp+ +vl++eag++ k ++  +  ++  kl+d+  +++++  ep++ l+gr +   +Gk lGG s  N +  +
   KKY17188.1  11 FDYIVCGGGTSGCVVASRLSEDPDVTVLLVEAGADSKGMEnVDLIGAYGKLLDGvPTDWNIVGEPNPGLDGRCVKASRGKFLGGCSGCNETFHT 104
                  69************************************9954444444455443389*****************************99987766 PP

  == domain 2  score: 94.0 bits;  conditional E-value: 3.9e-30
  GMC_oxred_N 133 lhgvdgrlgvtekgkeesplnkallkaaeelGlp.vprdlngk.hqcGvcllgvtcrtgarqstarawLrpalerpnleiltgakaekiil....egr 224
                   hg +g+++   +  +  p+++ +l+  ++ Gl+  p+ ++ + ++ + +++ +t+ +g r s+a+ +Lr+  erpnl+ilt++ ++k+il       
   KKY17188.1 114 SHGYEGPVHT--EPMDLAPISELVLESMQSKGLKlCPDLFTTGeSPNACGHAVRTRHKGLR-SSATGYLRE--ERPNLTILTNTLVDKVILeaehGSS 206
                  6999999888..999*******************777766666466666666657777776.6789****8..7899**************9875335 PP

  GMC_oxred_N 225 kkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkevgvdvvvdlp.vGknLqdHp 295
                  +  a +V++ d++gt +  ++ ++e++v++G+  sP +L+rSG+G++ +L+++g++  vdlp vGknL dHp
   KKY17188.1 207 DLVAKAVQVLDSSGT-TVEIRVNREIIVSGGTYCSPAILMRSGIGAKTELEPLGIKCQVDLPgVGKNLMDHP 277
                  667889999999999.8888899************************************************9 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.51
  GMC_oxred_N 161 eelGlp........vprdlngk.hqcGvcllgvtcrtgar 191
                   ++G++        v+r+++ + h++G   +g    +   
   KKY17188.1 461 TRQGWKhrddwkdyVKRNATTCyHPSGTLKMG--ASSSSS 498
                  34555577777778888888887888888888..443333 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1   0.1   5.1e-35   1.3e-31       2     144 .]     398     548 ..     397     548 .. 0.92

  Alignments for each domain:
  == domain 1  score: 110.1 bits;  conditional E-value: 5.1e-35
                  ---EEEEESTT-TCCEEEEE--TT-SHH..HHHHHHHHHHHHHHHCTSGGGTTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B- CS
  GMC_oxred_C   2 esrGrvtlsssdptgaplidpnylsdpr..dlaalvealkaarkilaaaaldvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMG 97 
                  +srG+v+l+s++p  +p++d nyl+d +  dl+ l ea++ a +i++++     ++++  ga +    +  + ++++ ++vk++++t +Hp+Gt +MG
   KKY17188.1 398 RSRGTVKLKSRNPLENPVVDHNYLNDAHglDLEVLSEAVAFANEIITES---EPTRNVLKGAWPSGTRQGWKHRDDWKDYVKRNATTCYHPSGTLKMG 492
                  79*************************999*******************...5677777777666666666666689********************* PP

                  STCGC.........BSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C  98 adpkd.........sVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                  a+ ++         sV+D++lrv+gv+ LrV+D Sv+P  p+a+++++++ ++eka
   KKY17188.1 493 ASSSSssssqsdplSVLDNRLRVKGVKALRVADCSVMPNLPQAHTQMPAYGIGEKA 548
                  *99988999999******************************************97 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   1.4e-05     0.035       1      30 [.      12      44 ..      12      51 .. 0.89
   2 ?   -1.7   0.0      0.66   1.7e+03     163     205 ..     188     240 ..     165     257 .. 0.59
   3 ?   -0.1   0.0      0.21   5.5e+02      65      96 ..     468     498 ..     453     536 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.4e-05
                EEEEECTSHHHHHHHHHHHHTT...EEEEESSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg...Vtllekgd 30
                d ++ GGG  G+ +A  L++ +   V+l+e+g 
  KKY17188.1 12 DYIVCGGGTSGCVVASRLSEDPdvtVLLVEAGA 44
                789*****************9899999999984 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.66
                 EEESECEEEE..EEEE......TCEEEEEEECT.EEEEEEEE...EEE--GGGHH CS
         DAO 163 ilegtevtgl..eeed......gkvwgverttp.gendaada...vVnaaGawsd 205
                 il++t v ++  e+e        k+++v    + g++++++    ++++ G + +
  KKY17188.1 188 ILTNTLVDKVilEAEHgssdlvAKAVQV--LDSsGTTVEIRVnreIIVSGGTYCS 240
                 5555555553222211233333333333..2222444323333359999999876 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHSSTTSEEEEEEEEEESSHHHH CS
         DAO  65 leelreleeelgididyrrtGllslaadeeel 96 
                 ++ ++++ ++++  + y+++G+l ++a++++ 
  KKY17188.1 468 RDDWKDYVKRNA-TTCYHPSGTLKMGASSSSS 498
                 577999999966.588*********9854322 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   2.3e-06    0.0059       1      36 [.      12      46 ..      12      69 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.3e-06
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   D +v G+G  g+ +A rl ++ p++ v+l+ea++++
     KKY17188.1 12 DYIVCGGGTSGCVVASRL-SEDPDVTVLLVEAGADS 46
                   789***************.999***********986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   6.2e-06     0.016       2      30 ..      16      45 ..      15      49 .. 0.91
   2 ?   -4.1   0.1         7   1.8e+04      27      35 ..     553     561 ..     553     561 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.2e-06
                   E--SHHHHHHHHHHHCC.TEEEEEE-SSSS CS
  NAD_binding_8  2 vGaGlsGlvaAylLaka.gfdvlllekrdr 30
                    G+G sG+v A++L+++ ++ vll+e++ +
     KKY17188.1 16 CGGGTSGCVVASRLSEDpDVTVLLVEAGAD 45
                   6***************99********9865 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 7
                    SSSSSSGGG CS
  NAD_binding_8  27 krdrlGGra 35 
                    k+dr GGr+
     KKY17188.1 553 KQDRAGGRM 561
                    799****97 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00023       0.6       1      33 [.      12      45 ..      12      51 .. 0.89
   2 ?    2.5   0.0     0.024        62     148     203 ..     175     239 ..     145     257 .. 0.69
   3 ?   -3.5   0.0       1.6     4e+03     309     338 ..     416     444 ..     403     449 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00023
                   SEEEE--SHHHHHHHHHHHHTTT.-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGl.kvavvekeqe 33
                   D iV+G+G +G++ A +++e    +v++ve +  
     KKY17188.1 12 DYIVCGGGTSGCVVASRLSEDPDvTVLLVEAGAD 45
                   88******************8888*****99875 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.024
                    HHHHHTCT...EEEEESEEEEEEEECTT......EEEEEEEEETTTTCEEEEEES.EEEE-----G CS
  FAD_binding_2 148 vesarkag...vdfqerteadeLivedg......rvtGavvenpesgrevrirak.avvlatgGfg 203
                    ++++++ +   ++++++t +d++i e +       +  +    ++sg++v+ir +  +++  g + 
     KKY17188.1 175 ATGYLREErpnLTILTNTLVDKVILEAEhgssdlVAKAV-QVLDSSGTTVEIRVNrEIIVSGGTYC 239
                    444444444679*************97744555333333.33359999999999967777777665 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.6
                    SCCBEEEE-TT.SSHHHHHHHSHHHHHHHH CS
  FAD_binding_2 309 seanvyldashgldaegleatleaineeaa 338
                      ++ yl+ +hgld e l + ++  ne++ 
     KKY17188.1 416 V-DHNYLNDAHGLDLEVLSEAVAFANEIIT 444
                    4.7889999999******999999888765 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   6.7e-05      0.17      18      49 ..      11      42 ..       8      49 .. 0.92
   2 ?   -2.1   0.0       0.7   1.8e+03     111     141 ..     184     214 ..     178     235 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.7e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailer 49
                 D ++ G+G+sG   a  l+++pd+ v+++e+
  KKY17188.1 11 FDYIVCGGGTSGCVVASRLSEDPDVTVLLVEA 42
                589***************************97 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.7
                 TTEEEEESEEEEEEEEETBTEEEEEEEEEHH CS
        Thi4 111 anvkllnavaveDlivregegvaGvvinwtl 141
                 +n+ +l+ + v+ +i+  ++g + +v +   
  KKY17188.1 184 PNLTILTNTLVDKVILEAEHGSSDLVAKAVQ 214
                 6777777777777776665555555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.33s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 3600.50
//
Query:       KKY17189.1  [L=242]
Description: putative geranylgeranyl pyrophosphate synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1680.35
//
Query:       KKY17190.1  [L=1565]
Description: putative nfx1-type zinc finger-containing protein 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-29  101.9   0.0    6.7e-29  100.9   0.0    1.5  1  AAA_12       AAA domain
    2.2e-21   76.8   3.1    2.8e-21   76.5   0.0    2.5  2  AAA_11       AAA domain
    2.2e-07   31.3   0.1    3.2e-06   27.5   0.0    2.7  2  AAA_19       AAA domain
      4e-05   23.4   0.2     0.0011   18.7   0.0    2.6  2  AAA_30       AAA domain
     0.0021   17.4   0.1     0.0044   16.3   0.1    1.5  1  DUF2075      Uncharacterized conserved protein (DUF2075)
  ------ inclusion threshold ------
       0.08   12.7   0.6       0.22   11.3   0.6    1.7  1  HAUS2        HAUS augmin-like complex subunit 2
        0.1   12.6   0.0       0.54   10.2   0.0    2.3  1  ResIII       Type III restriction enzyme, res subunit
       0.56   10.4   2.7        6.5    7.0   0.1    2.7  2  zf-RING_7    C4-type zinc ribbon domain
          2    8.6   6.6        5.4    7.2   0.4    2.9  2  Zn-ribbon_8  Zinc ribbon domain


Domain annotation for each model (and alignments):
>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.0   3.4e-32   6.7e-29       1     171 [.     942    1152 ..     942    1178 .. 0.83

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 3.4e-32
      AAA_12    1 lerSlferllkke....kekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkreleaqealeepleplvfidvekseeekekke..ksyiNeeE 91  
                  l+rS ferl++ e    k +v  L++q Rm+peIs + ++++Y g L+d++s+++ +           ++++++d  +see+++++   ks +N  E
  KKY17190.1  942 LDRSQFERLSNGEpgrpKMPVAQLNVQRRMRPEISTLIRNTVYPG-LEDHPSTTNLPDV-----IGMRKNVFWLDHGHSEESQQSDMhhKSHSNIWE 1032
                  689********99999999************************97.7999998887766.....788888*****99888888876678******** PP

      AAA_12   92 aelvvklvekllkkgseeerkkigvitpYraqvellkkklke...............keeekseke............................... 142 
                  +e+v +lv++++++g+ +  ++i+v+tpY  q++ l++++++               k       +                               
  KKY17190.1 1033 VEMVHSLVRHIVRQGEYS-SSDIAVLTPYTGQLQKLRSAMRNdfevvlsdrdqealsK-------Dgfgvqdadladgepsgqsnqrkaplekkkls 1121
                  *****************9.8*********************96666666555555550.......05555555555555555555566667777888 PP

      AAA_12  143 ..ievntvdgfQGrekdviilslVRsnekke 171 
                    ++++tvd+fQG+e +vii+slVRsn++++
  KKY17190.1 1122 dlLRIATVDNFQGEEAKVIIVSLVRSNDERK 1152
                  99*************************5542 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.0   1.4e-24   2.8e-21       2     258 ..     596     924 ..     595     926 .. 0.73
   2 ?   -1.4   0.9      0.81   1.6e+03      79     140 ..    1272    1331 ..    1239    1374 .. 0.59

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 1.4e-24
      AAA_11   2 lndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgneeeri 100
                 l++ q +a+  al+++  + iqGPPGtgK++  v+++++l+ +   + +++ +p + vC  +N A D+ le l          +   ki+R+g ++  +
  KKY17190.1 596 LDRGQCRALIAALTHEY-AFIQGPPGTGKSFLGVQVMKVLIGH---KDQANLGPVVVVC-YTNHALDQFLEHLHA--------TGIGKIIRIGGQS--Q 679
                 67889999999999997.9*********************765...4577778877777.69**********999........77889*******9..2 PP

      AAA_11 101 seavksvsleekvekrlekee.............................................................................. 121
                 s+ ++++ l++  +++ + ++                                                                              
  KKY17190.1 680 SSLLEEHNLRKVSQAEGKTRSesyllakcyealdyetkcikgdlgrvhgilkradwsnlkyhlrtrypriyaqfdrtrqdgfevfgrhpfelwapiaks 778
                 444444444433333333333457788889998888888888888888888888887777777777777777777777777777777777777777777 PP

      AAA_11 122 .............kaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelskeleeaeesleeevldeaeivltTlsgag 207
                                +l +  +k++ +++++++++ +     ++   +++  +++  +  + +k +++++++++++ +++ + vl++a+++  T +g +
  KKY17190.1 779 vaesktadepeslPGDLDHLFQKAETDIESMTQQERQCL---IE-LWSREVHDQALDNMFEKSKNADSIQRQITNIHDEVDRRVLQDADVIGITTTGLA 873
                 766665555544433344444444444444443333322...22.233333344444445556666688999999999999**********99999998 PP

      AAA_11 208 sklleklakkfdvviIDEAaqavEpstliPlrlgakkvvLvGDpkQLpatv 258
                 ++  + ++ k ++vi  EA+  +Ep ++ +l+ ++++++ +GD+ QL++ +
  KKY17190.1 874 KRISTLQRIKCKAVICEEAGEVMEPHMISALLPATEHFIQIGDHEQLRPQI 924
                 776555555***************************************966 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.81
      AAA_11   79 ldsegekykpkivRvgneeeriseavksvsleekvekrlekee........kaqlakeiskeleklakel 140 
                  l++e ek++ +i+R  + + +i++a ++  ++++v++r e+++                   l+++a+  
  KKY17190.1 1272 LETEFEKSRSDIIRSIRLSASIDSAGHAANVRKQVQSRHEASRrltreislF----------LQNVADRH 1331
                  4456666666677766666666777777777777777776654333333331..........22222222 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.6e-09   3.2e-06       3     142 ..     602     921 ..     600     925 .. 0.82
   2 ?   -3.4   0.0       5.5   1.1e+04      27      60 ..    1036    1069 ..    1033    1073 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.6e-09
      AAA_19   3 eave.alkekvllvtaGpGtGKTrvlkhivallvelg.gvkpeeillvaftgrAakelrerlaalgae.....atTiHrlal................. 77 
                 +a+  al+++  ++ ++pGtGK+ + ++++++l+  + + ++ ++++v++t++A ++  e l+a g                                 
  KKY17190.1 602 RALIaALTHEYAFIQGPPGTGKSFLGVQVMKVLIGHKdQANLGPVVVVCYTNHALDQFLEHLHATGIGkiiriG-------Gqsqsslleehnlrkvsq 693
                 56654999************************99766156779*******************444333444440.......245566666666666777 PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  KKY17190.1 694 aegktrsesyllakcyealdyetkcikgdlgrvhgilkradwsnlkyhlrtrypriyaqfdrtrqdgfevfgrhpfelwapiaksvaesktadepeslp 792
                 7777777778888888888889999999999999999************************************************************** PP

      AAA_19  78 ...................................................................ldfddlltealelleeaeeekklqeeellivD 109
                                                                                     d+d +  ++ +l ++ ++ + + +++++i  
  KKY17190.1 793 gdldhlfqkaetdiesmtqqerqclielwsrevhdqaldnmfeksknadsiqrqitnihdevdrrvlQDADVIGITTTGLAKRISTLQRI-KCKAVICE 890
                 ********************************************9999999999999997777776523333333333333355566667.7889**** PP

      AAA_19 110 EfqdvdelqyrLlkallgekkklllvGDpdQli 142
                 E+ +v   + ++++all+ +++++ +GD++Ql 
  KKY17190.1 891 EAGEVM--EPHMISALLPATEHFIQIGDHEQLR 921
                 **9996..45678899978888*********86 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.5
      AAA_19   27 lkhivallvelggvkpeeillvaftgrAakelre 60  
                  ++  v+++v++g+ +  +i+++++     ++lr 
  KKY17190.1 1036 VHSLVRHIVRQGEYSSSDIAVLTPYTGQLQKLRS 1069
                  6778999******999***999986655666655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   5.7e-07    0.0011       2      65 ..     596     662 ..     595     702 .. 0.74
   2 ?    1.7   0.1     0.088   1.8e+02      67     130 ..     866     922 ..     829     926 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 5.7e-07
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaag.....grviglAptgkaAkvLaee 65 
                 l+ +Q +a+ a+lt++  +a+++Gp+GtGK+++  ++ +++  ++     g+v+++  t+ a ++  e+
  KKY17190.1 596 LDRGQCRALIAALTHE--YAFIQGPPGTGKSFLGVQVMKVLIGHKdqanlGPVVVVCYTNHALDQFLEH 662
                 7899*****9999999..8************97555544443332245579999999999998885543 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.088
      AAA_30  67 gieastiakllkrlkgrarlepgtllivDEagmvdtkqlaallkaaekagakvilvGDerQlas 130
                 gi++  +ak +++l+      + + +i  Eag v   ++ + l  a++   + i +GD++Ql +
  KKY17190.1 866 GITTTGLAKRISTLQ----RIKCKAVICEEAGEVMEPHMISALLPATE---HFIQIGDHEQLRP 922
                 333444444443333....3445899******9988777666666655...699*******975 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.2e-06    0.0044       3      50 ..     612     663 ..     610     699 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.2e-06
     DUF2075   3 vvlVtGvaGtGKtvvllnllael....eddeeertavylsvNhplvlvlrea 50 
                   +++G +GtGK+ ++++++  l     + +++  +v+ + Nh+l + l++ 
  KKY17190.1 612 YAFIQGPPGTGKSFLGVQVMKVLighkDQANLGPVVVVCYTNHALDQFLEHL 663
                 579******************9999877777888999999***999988875 PP

>> HAUS2  HAUS augmin-like complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.6   0.00011      0.22      37      91 ..     830     884 ..     786     892 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
       HAUS2  37 ndalisvLrelsavqrelaklnlElqlrk.ddkdvadlthvselekkcealqrvtt 91 
                  d +++  ++  ++qr++ ++  E+++r+ +d dv+ +t    l+k++ +lqr+  
  KKY17190.1 830 LDNMFEKSKNADSIQRQITNIHDEVDRRVlQDADVIGITT-TGLAKRISTLQRIKC 884
                 467999999999***************9845899999986.68**********964 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00027      0.54      24      81 ..     610     670 ..     587     717 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00027
                 TSEEEEEESTTSTHHHHHHHHHHHH-S........-EEEEESSHHHHHHHHHHGGGGTGG. CS
      ResIII  24 dkrglikmaTGtGKTlvaaklierllkkgkee...kflflvprkslleqtleefkkflsea 81 
                 ++ ++i+ + GtGK+++ +++++ l  ++++     +++++ +++ l+q le++  +   +
  KKY17190.1 610 HEYAFIQGPPGTGKSFLGVQVMKVLIGHKDQAnlgPVVVVCYTNHALDQFLEHLHATGIGK 670
                 5667899*******************9877768999***************9986665554 PP

>> zf-RING_7  C4-type zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.4     0.081   1.6e+02      21      30 ..    1218    1227 ..    1208    1228 .. 0.77
   2 ?    7.0   0.1    0.0033       6.5       9      31 ..    1511    1543 ..    1510    1543 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.081
                  TB-EE-TTT- CS
   zf-RING_7   21 devvtCpeCG 30  
                    +++Cp C+
  KKY17190.1 1218 SRIPQCPDCQ 1227
                  459******8 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0033
                  --CCHHHHHCCS....TB......-EE-TTT-- CS
   zf-RING_7    9 lppqvlselrag....de......vvtCpeCGR 31  
                  + p++l+ ++++    +e       ++CpeCG+
  KKY17190.1 1511 VTPEELAVIKQAmfaiGEcgmpmeQARCPECGA 1543
                  7788888888888888666666556******96 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.4    0.0027       5.4       8      38 ..    1200    1232 ..    1197    1234 .. 0.76
   2 ?    3.2   1.1     0.048        96      27      34 ..    1535    1543 ..    1527    1545 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0027
  Zn-ribbon_8    8 CeeCghefevlqsis.dap..ltaCPeCgsevrr 38  
                    ++Cg +f  l+ +s d +   ++CP+C+ +vr+
   KKY17190.1 1200 TDKCG-RFAGLADVSgDLAsrIPQCPDCQCPVRQ 1232
                   57899.999888888876664555****989986 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.048
  Zn-ribbon_8   27 ta.CPeCgs 34  
                   +a CPeCg+
   KKY17190.1 1535 QArCPECGA 1543
                   444****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      659  (0.0367561); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.05u 0.36s 00:00:01.41 Elapsed: 00:00:00.55
# Mc/sec: 8537.91
//
Query:       KKY17191.1  [L=294]
Description: putative 3-oxoacyl-(acyl-carrier-protein) reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-38  131.9   0.0    3.6e-38  131.0   0.0    1.4  1  adh_short     short chain dehydrogenase
    2.4e-33  115.6   0.0    8.8e-33  113.8   0.0    1.7  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    7.5e-13   48.8   0.1    8.1e-12   45.4   0.1    2.0  1  KR            KR domain
    0.00066   19.2   0.1     0.0056   16.2   0.1    2.1  1  Epimerase     NAD dependent epimerase/dehydratase family
     0.0042   16.5   0.0     0.0094   15.3   0.0    1.5  2  DUF1776       Fungal family of unknown function (DUF1776)


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.0   0.0     1e-41   3.6e-38       4     190 ..      15     221 ..      12     225 .. 0.86

  Alignments for each domain:
  == domain 1  score: 131.0 bits;  conditional E-value: 1e-41
                 EEESTTSHHHHHHHHHHHHTT-EEEE...EESCHHHHHHHHHHHHHT.TSEEEEEE-TTT.SHHHHHHHHHHHHHHH...........SSESEEEE--- CS
   adh_short   4 lvtGassGIGraiakelakeGakvvv...vdrseekleevakelkee.gakalaiqvDvt.dreevealvekavkkl...........gkldvLvnNAG 86 
                 +vtG+s+GIG ai+++la++G+++++    + s+++ ++++++l  e + +   +q+D++  +++v +++++a++++            ++d+L+nNAG
  KKY17191.1  15 IVTGGSRGIGEAISENLASKGCNLLLvftSEGSKQRTQTLCSKLSHEhKIHCSSVQADLSePSQAVPQILSAAQERFktisssspsasFQIDILINNAG 113
                 8**********************9883223456678888889998887888899******6778899**********77777766665689******** PP

                 S.....S--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEES CS
   adh_short  87 i.....tgsgpfselseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPG 180
                 i      ++++   ++++++ + ++vN+ +++llt+a++p++ + +sGrIvnvsSv +  + +g++ Y+ +Kaa++++tr +a+ela++  +vna++PG
  KKY17191.1 114 IagnkyLNDTSLGPIESTQFHKQYNVNVLAPLLLTQACAPYLPADRSGRIVNVSSVSSSLGCEGQSIYAGTKAALEAMTRVWARELAER-ATVNAINPG 211
                 *5555544555555667778888*****************************************************************8.9******** PP

                 SBSSHHHHHH CS
   adh_short 181 lvdTdmakel 190
                 +v  dm  ++
  KKY17191.1 212 PVYGDMYSQA 221
                 **99998765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.0   2.4e-36   8.8e-33       3     199 ..      20     239 ..      14     244 .. 0.87

  Alignments for each domain:
  == domain 1  score: 113.8 bits;  conditional E-value: 2.4e-36
                   TTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE..E....EE--TTSHHH.HHHHHHHHHHHHS...........SEEEEEE-----E CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae..v....lecDVtdeeq.vealveevvekfg...........klDilvnnagiap 81 
                    +gIG+ai + la++G++++l+  +e +k+r+++l ++l++e  +    +++D ++++q v ++ ++++e+f+           ++Dil+nnagia 
    KKY17191.1  20 SRGIGEAISENLASKGCNLLLVFTSEGSKQRTQTLCSKLSHEhkIhcssVQADLSEPSQaVPQILSAAQERFKtisssspsasfQIDILINNAGIAG 116
                   49************************************99664546789******9876589999999999972333333333358*********** PP

                   G...CSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE-- CS
  adh_short_C2  82 k...lkgpfletsreefdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgp 173
                   +    ++++  ++  +f++  +vn+ + +ll++a++p++ +   g+ivn+ssv+++ + +++++y+ +Kaalea+tr +A+el++ + +vNa+ pgp
    KKY17191.1 117 NkylNDTSLGPIESTQFHKQYNVNVLAPLLLTQACAPYLPADrsGRIVNVSSVSSSLGCEGQSIYAGTKAALEAMTRVWARELAE-RATVNAINPGP 212
                   *997777788899************************7766558****************************************9.99********* PP

                   BHCTGGGGSTT.HHHHHHHHHHHSTTS CS
  adh_short_C2 174 ikTlaasgikg.fdelleelearaplg 199
                   +  ++ s++ + f ++ ++  + apl 
    KKY17191.1 213 VYGDMYSQAGKeFWDVNQKYVDAAPLM 239
                   *****6666544999999999999885 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.1   2.3e-15   8.1e-12       4     172 ..      15     204 ..      13     213 .. 0.78

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 2.3e-15
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHH.HHHHHHHHHHHSS---E...........EEE-- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkda.vealleeikaeeppikG...........vihaA 89 
                 ++tGG  g+G ++++ la+kg + l++++ +  ++++ ++l ++l++   ++++ v+aD+s++++ v ++l+++++++++i+             i+ A
  KKY17191.1  15 IVTGGSRGIGEAISENLASKGCNLLLVFTSE-GSKQRTQTLCSKLSHEhKIHCSSVQADLSEPSQaVPQILSAAQERFKTISSsspsasfqidiLINNA 112
                 79*******************9988888888.5667777799999876599**********9864277777777777655443222222222228999* PP

                 -------TTT--.....HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEE CS
          KR  90 gvlrdklleemt.....aedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavs 172
                 g++ +k l++++     + ++++ ++  v +   L +++++    ++   +v +SS+++ lg  gq+ Ya + a l+a+ + ++++ ++  +
  KKY17191.1 113 GIAGNKYLNDTSlgpieSTQFHKQYNVNVLAPLLLTQACAPylpaDRSGRIVNVSSVSSSLGCEGQSIYAGTKAALEAMTRVWARELAERAT 204
                 *9887777776522222789999***************998866677778******************************999877655333 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.6e-06    0.0056       2     175 ..      15     216 ..      15     268 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.6e-06
                 EEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC.........EEEE--TT-HH.HHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgye.vigldrlssasntarledl.........elveldltdrs.alerlfkeeqpdavihlAavggvaassedpadfie 89 
                 +VtG++  iG a+ ++l++kg + +++++++ s+++t+ l  +         + v++dl ++s a+ ++++  ++++ +     ++++as++    + +
  KKY17191.1  15 IVTGGSRGIGEAISENLASKGCNlLLVFTSEGSKQRTQTLCSKlshehkihcSSVQADLSEPSqAVPQILS--AAQERFKTISSSSPSASFQIDILINN 111
                 69*******************99899999999999888877777888888888888888888756666666..66666666667777777777777666 PP

                 HHTHHHHHHHHHHH..........HHTCT...EEEEEEEGGGGTSCSS...SS.BSTCSTTS--..--SSHHHHHHHHHHHHHHHHHHHH..T-EEEEE CS
   Epimerase  90 knlqgtlnlleaar..........kagvk...rllflsSsevYGkdae...qp.keettltgpl..kpnspYaaaKlageklveayaaqy..glnaiil 167
                 + ++g+  l + +           +++v+    ll    ++ Y + ++   +   +++  +++l  + +s Ya +K+a e +++ +a++      + ++
  KKY17191.1 112 AGIAGNKYLNDTSLgpiestqfhkQYNVNvlaPLLLTQACAPYLPADRsgrIVnVSSV--SSSLgcEGQSIYAGTKAALEAMTRVWARELaeRATVNAI 208
                 7777777777777777777777765566655656666666666544442332112333..344445888888888888888888888776322333345 PP

                 EESEEEST CS
   Epimerase 168 rlfnlyGp 175
                 ++  +yG 
  KKY17191.1 209 NPGPVYGD 216
                 56666665 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.58   2.1e+03     153     179 ..      67      93 ..      43     113 .. 0.71
   2 !   15.3   0.0   2.6e-06    0.0094     109     195 ..     126     208 ..     114     213 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.58
     DUF1776 153 psissslnlpfhapEalvssalsalfe 179
                  s+ ++l+ p +a++ ++s a + + +
  KKY17191.1  67 SSVQADLSEPSQAVPQILSAAQERFKT 93 
                 456666666777777766666666555 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.6e-06
     DUF1776 109 etiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqi 195
                   i + +++++ n ++l+p+l++qa  p l +   +++  iv   s+sssl    +++ a +  al+a+++v +rel+     v  i
  KKY17191.1 126 GPIESTQFHKQYNVNVLAPLLLTQACAPYLPA---DRSGRIVNVSSVSSSLGCEGQSIYAGTKAALEAMTRVWARELA-ERATVNAI 208
                 4578899************************9...8888888899********************************9.55566555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 1785.87
//
Query:       KKY17192.1  [L=587]
Description: putative beta-mannosidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-17   62.1   0.1    1.1e-16   61.3   0.1    1.4  1  Abhydrolase_1   alpha/beta hydrolase fold
    2.9e-13   50.2   0.7      6e-13   49.2   0.7    1.5  1  Mannosidase_ig  Mannosidase Ig/CBM-like domain
    7.8e-11   41.6   0.0    1.6e-10   40.6   0.0    1.5  1  Ig_mannosidase  Ig-fold domain
    2.7e-05   24.9   0.3    2.7e-05   24.9   0.3    2.1  3  Abhydrolase_6   Alpha/beta hydrolase family
      8e-05   22.0   0.1    0.00018   20.9   0.1    1.5  2  Hydrolase_4     Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.1     3e-20   1.1e-16       1     132 [.     315     467 ..     315     534 .. 0.86

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 3e-20
                    SEEEEE-STTTCGGG..........GTTGHHHHHHHHT.TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHH....HHHHHCTTSSEE.EEEE CS
  Abhydrolase_1   1 pvlvilhGlpgssdv..........waerglapaLakd.gfdvillDlrGvgySspapacinddygtasvaddld....rildalgddklt.lvGh 80 
                    +++++ hG +gssd           ++   l +a + + ++++i+ D++G+g+Ss++++  ++ ++   +ad+++     + ++lg+ +l  ++G 
     KKY17192.1 315 NAVLVMHGTGGSSDQflnpnfagelFCSSQLLDASPSSgQYFLIIRDVLGHGRSSKPSDGLHTKFPRYRYADMVKldhlLLTQHLGVNHLRlVMGT 410
                    689***********977777666666665555555555************************7777777888888775455*************** PP

                    THHHHHHHHHHHHHGGGEEEEEEESE.....CSSCCHHHHHHHHHHHHHHCHHCHHH CS
  Abhydrolase_1  81 SmGGmialayaaeyperVkalvllga.....idpaaslieaqrqqaksfpdffdgya 132
                    SmGGm ++ + ++yp+ ++a++ l++     +  + ++++    ++ ++p++ +g +
     KKY17192.1 411 SMGGMHSWLWGEMYPDFMDAIMPLASlpvqiSGRNRMFRKMIIDAITNDPEWKRGEY 467
                    **************************9999999999999999999999999998876 PP

>> Mannosidase_ig  Mannosidase Ig/CBM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.7   1.7e-16     6e-13       3      93 ..      77     175 ..      75     175 .. 0.91

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 1.7e-16
  Mannosidase_ig   3 levwvvsdllepvqgtlelrlidltgkllaets..ttpvtvgansstevaeidvdellaatggadpravvlvarledatg.........evlatn 86 
                     l+v+v+sdl+ +v+gt + +++ ++g++l        pvtvga+++ ++++ ++++ll +  + dp +v+l ++   atg         ++++tn
      KKY17192.1  77 LDVYVTSDLWDAVTGTASATWYGWNGTVLDLPAftDSPVTVGALNTSQIFSRNLTTLLGS--QYDPTNVLLQLSVN-ATGskpnsdaqqAFTHTN 168
                     89*************************9886665589*********************98..79**********99.8**999999999888998 PP

  Mannosidase_ig  87 vywpvpl 93 
                     +++ +pl
      KKY17192.1 169 WFHASPL 175
                     8887775 PP

>> Ig_mannosidase  Ig-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   4.5e-14   1.6e-10       1      67 [.     180     246 ..     180     251 .. 0.89

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 4.5e-14
  Ig_mannosidase   1 Lkdpelaskvtevsggfkvtlsa.davAlfVwLe.lsgvdgrFsdNgFdLlpgesktvtftvnedttle 67 
                     L+dp+l   ++++  + ++t++a +++++++wL+ ++g+ + F+ NgF+L +ge+k + ++v  dtt +
      KKY17192.1 180 LVDPGL--ILSHDPSSRTFTVEAtSGISAWTWLDyPAGALVAFDANGFWLAKGEKKILSYEVRIDTTGG 246
                     678999..77777899*****999*************************************97766655 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.9         1   3.6e+03     171     171 ..     174     174 ..      43     238 .. 0.61
   2 ?   -2.8   0.3       2.3   8.1e+03       8      30 ..     203     226 ..     171     260 .. 0.74
   3 !   24.9   0.3   7.6e-09   2.7e-05       1     129 [.     317     471 ..     317     559 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1
                    T CS
  Abhydrolase_6 171 v 171
                    +
     KKY17192.1 174 P 174
                    2 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.3
                    C.....G..C.HHHHHHHHCCTCEEE CS
  Abhydrolase_6   8 gssassW..l.vapLaallaagvhvl 30 
                    g sa+ W  + ++ L+a+ a g+  +
     KKY17192.1 203 GISAWTWldYpAGALVAFDANGF--W 226
                    34566664324556666655554..4 PP

  == domain 3  score: 24.9 bits;  conditional E-value: 7.6e-09
                    EEEE--GC.....G....CHHHH........HHHHCCT..CEEEEE--TTSTS-GGCS--HHH......CHHH....HHHHCCTT..TTSE.EEEE CS
  Abhydrolase_6   1 vlllHGagssassW....lvapL........aallaag..vhvlapDlpGhGrsdpppldled......ladl....aalldelaagggpv.vlvG 71 
                    vl++HG+g+s++++    ++++L        a  +++   +  ++ D  GhGrs+ p ++l        +ad     + ll+   ++ +    ++G
     KKY17192.1 317 VLVMHGTGGSSDQFlnpnFAGELfcssqlldA--SPSSgqYFLIIRDVLGHGRSSKPSDGLHTkfpryrYADMvkldHLLLTQHLGVNH-LrLVMG 409
                    7999**********655424444555433433..333366777899******7755553332232224435553322223333322333.259*** PP

                    ETCHHHHHHHHHHCC..EEEEES-..----TTTS----TTHHHHHHTT-C..CCCHCCH....S CS
  Abhydrolase_6  72 HSlGGalalaaaplalvvgvlldppptalpagllaaalelllallallrl..lawlsre....p 129
                     S+GG+ +++++   +++  ++ p  +a  +  ++ + +++++ +  +++  ++w ++e     
     KKY17192.1 410 TSMGGMHSWLWGEMYPDFMDAIMP--LASLPVQISGRNRMFRKMIIDAITndPEWKRGEymsvT 471
                    **********77777744433333..23333337777777776666555567788866544331 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.4   5.2e+03       6      20 ..     316     330 ..     314     339 .. 0.82
   2 !   20.9   0.1     5e-08   0.00018      35     107 ..     358     434 ..     351     453 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.4
  Hydrolase_4   6 vvvlvHGlaehsgry 20 
                  +v+++HG + +s+++
   KKY17192.1 316 AVLVMHGTGGSSDQF 330
                  799999999999877 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 5e-08
  Hydrolase_4  35 yalDhrGhGrse.gkrghvpsfddy.vdDlaafvekvkeehpel..plfllGhSmGGliallyllrypdkvaglils 107
                  ++ D  GhGrs  +  g  ++f +y ++D+ ++ + + ++h +    + ++G SmGG+ + l++++ypd +++++  
   KKY17192.1 358 IIRDVLGHGRSSkPSDGLHTKFPRYrYADMVKLDHLLLTQHLGVnhLRLVMGTSMGGMHSWLWGEMYPDFMDAIMPL 434
                  567999*****99888888888887468999997777799998866789********************88877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 3500.61
//
Query:       KKY17193.1  [L=509]
Description: putative beta-mannosidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0024   18.5   0.0     0.0051   17.5   0.0    1.5  1  Glyco_hydro_2  Glycosyl hydrolases family 2


Domain annotation for each model (and alignments):
>> Glyco_hydro_2  Glycosyl hydrolases family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.8e-07    0.0051      68      93 ..     202     232 ..     158     246 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.8e-07
                    E..EEEEEES--BBEC...CCB--EEEEEEE CS
  Glyco_hydro_2  68 k..lelevknpklWsp...etPnLYtlkvel 93 
                    +  ++++ +  klW+p   +++nLY+l++ +
     KKY17193.1 202 QgaVTISTNATKLWWPtglGEQNLYNLTIDV 232
                    12346666777*****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3373.54
//
Query:       KKY17194.1  [L=616]
Description: putative d-3-phosphoglycerate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-55  187.4   0.0    2.3e-55  186.7   0.0    1.3  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
    1.8e-33  115.0   0.0    3.2e-33  114.2   0.0    1.4  1  2-Hacid_dh    D-isomer specific 2-hydroxyacid dehydrogenase, 
     0.0034   17.9   0.2      0.018   15.6   0.0    2.2  2  XdhC_C        XdhC Rossmann domain
     0.0054   16.0   0.1      0.073   12.4   0.0    2.2  2  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
       0.11   12.3   0.4       0.37   10.6   0.0    2.1  2  ACT           ACT domain


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.7   0.0   6.4e-59   2.3e-55       1     178 []     109     289 ..     109     289 .. 0.96

  Alignments for each domain:
  == domain 1  score: 186.7 bits;  conditional E-value: 6.4e-59
                   HHHHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE CS
  2-Hacid_dh_C   1 lalllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivsl 97 
                   +all+al+r++++a  ++++g+w ++++l g e+++kt+GiiGlG++G +va+++k++gm viayd++ +++ +e++  v +++l  ll  +D+v++
    KKY17194.1 109 IALLMALARNVPDACLSLKAGKW-ERSRLVGIEVQKKTLGIIGLGKVGLTVARLAKGLGMTVIAYDPYASPSLAESQSIVLYDTLPLLLPLCDFVTI 204
                   689********************.9*********************************************99977777789**************** PP

                   -S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTC....HHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  98 hlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplped....spllelpnviltPHia 178
                   h+pl ++tr++++a+el +mk+g+ ++N+aRGg+vde+aLleaL+sg+iagaalDvf +ep+p +    ++l+ +p+v+ tPH++
    KKY17194.1 205 HTPLLASTRGMLSATELTLMKPGSRVLNVARGGTVDEAALLEALESGHIAGAALDVFTSEPPPFEstvvDRLIAHPRVVATPHLG 289
                   ***************************************************************883444588***********97 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.2   0.0     9e-37   3.2e-33       1     134 []       8     321 ..       8     321 .. 0.98

  Alignments for each domain:
  == domain 1  score: 114.2 bits;  conditional E-value: 9e-37
                 EEEEST.CHHHHHHHHHTTEEEEEESCSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh   1 vlileplreeelellkeegvevevkdellteellekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesvA 99 
                 vl+ e+l++++l+ll+  +++v+ ++ l+ +el   ++d++al+vrs+tkvt e+l+a ++Lkv+aragvGvDnvD++aa+++G++V+n p  +  ++A
  KKY17194.1   8 VLVPEKLSPDGLALLRT-TLDVDERRGLSAAELRGLIPDYEALLVRSETKVTSELLAAGKRLKVVARAGVGVDNVDVPAATKHGVIVVNSPVGNIGAAA 105
                 67778999*********.33777777************************************************************************* PP

                 HHH................................................................................................ CS
                 xxx................................................................................................ RF
  2-Hacid_dh 100 Elt................................................................................................ 102
                 E+t                                                                                                
  KKY17194.1 106 EHTiallmalarnvpdaclslkagkwersrlvgievqkktlgiiglgkvgltvarlakglgmtviaydpyaspslaesqsivlydtlplllplcdfvti 204
                 *************************************************************************************************** PP

                 .....................................................................................T-BHHHHHHHHHHH CS
                 .....................................................................................xxxxxxxxxxxxxx RF
  2-Hacid_dh 103 .....................................................................................aaTeeaqeniaeea 116
                                                                                                      a+T eaqen+   +
  KKY17194.1 205 htpllastrgmlsateltlmkpgsrvlnvarggtvdeaallealesghiagaaldvftsepppfestvvdrliahprvvatphlgASTVEAQENVSIDV 303
                 *************************************************************************************************** PP

                 HHHHHHHHTTCCGTTBCS CS
                 xxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 117 aenlvaflkgespanavn 134
                 +e+++++l+g  p++avn
  KKY17194.1 304 CEQVLQILAGALPRSAVN 321
                 ****************98 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.98   3.5e+03     101     119 ..      94     111 ..      80     114 .. 0.84
   2 !   15.6   0.0   4.9e-06     0.018       2      66 ..     147     249 ..     146     258 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.98
                 EESS-S--S---SHHHHHH CS
      XdhC_C 101 lhaPiGldigaktpeeIAv 119
                 +++P+G +iga   + IA+
  KKY17194.1  94 VNSPVG-NIGAAAEHTIAL 111
                 7899*9.9****9999998 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 4.9e-06
                 EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG..........-GGG-TT-SE....................................-EEEE--S-H CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpreefa..........tkerfpeade....................................tavvvlthdh 54 
                  i+G g+v+  +arla+ lg++v+ +dp ++            +        +                                    + v+ + ++ 
  KKY17194.1 147 GIIGLGKVGLTVARLAKGLGMTVIAYDPYASPSlaesqsivlyD--------TlplllplcdfvtihtpllastrgmlsateltlmkpgSRVLNVARGG 237
                 69**************************9843334444444440........25555555555555556666666666666789999999999999999 PP

                 HHHHHHHHHHSS CS
      XdhC_C  55 klDaealeaalr 66 
                 + D++al +al+
  KKY17194.1 238 TVDEAALLEALE 249
                 999999999995 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0     2e-05     0.073      22      58 ..     138     173 ..     129     185 .. 0.89
   2 ?    0.8   0.0     0.071   2.5e+02     109     136 ..     215     240 ..     203     248 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2e-05
                  EETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEE CS
  AlaDh_PNT_C  22 gvpgvepakvlviGgGvaGlqAiatakglgakVtvlD 58 
                  g++ v++ +  +iG G +Gl  ++ akglg +V ++D
   KKY17194.1 138 GIE-VQKKTLGIIGLGKVGLTVARLAKGLGMTVIAYD 173
                  556.7888899************************99 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.071
                  SC-HHHHHTS-TTEEEEETTGGGT-SBT CS
  AlaDh_PNT_C 109 LvteemvksMkpgsVivDvAidqGGnve 136
                  +++++ +  Mkpgs +  vA  +GG+v+
   KKY17194.1 215 MLSATELTLMKPGSRVLNVA--RGGTVD 240
                  567888999*******9988..688876 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.8   6.4e+03      25      39 ..     407     421 ..     407     431 .. 0.77
   2 ?   10.6   0.0    0.0001      0.37       2      38 ..     505     541 ..     504     550 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.8
                 TSEEEEEEEEEESTT CS
         ACT  25 giNidsieqrssedk 39 
                 ++Ni+++e    e++
  KKY17194.1 407 NVNIVNAELIARERG 421
                 799999998888773 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0001
                 EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEEST CS
         ACT   2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssed 38 
                  l+++  D PG ++ v+++l+  g+Ni +++++  e 
  KKY17194.1 505 LLICRNYDSPGRIGLVGSLLGTEGVNINFMSVAAREQ 541
                 6788999************************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.51
# Mc/sec: 3638.13
//
Query:       KKY17195.1  [L=400]
Description: putative c6 finger domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.6e-05   21.7   0.0    0.00013   21.1   0.0    1.3  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   7.4e-09   0.00013     141     207 ..     279     343 ..     223     362 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 7.4e-09
  Fungal_trans 141 lwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlwesddaseetlvetk 207
                    w+ w+  ae+ rR+ ++ + +D  ++ + G p++l  + + lp P +   +we+  + e+++v+++
    KKY17195.1 279 RWEAWIV-AEAKRRTLYTMYLFDSVLSAQDGLPTFLGTELQGLPAPANKA-MWEAGARHEWEKVYNV 343
                   5789***.******************************************.*********9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2579.43
//
Query:       KKY17196.1  [L=517]
Description: putative mfs multidrug [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-45  154.9  31.3    6.4e-44  150.3  17.3    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.3  17.3   3.6e-48   6.4e-44       3     270 ..      46     338 ..      44     352 .. 0.81
   2 !   10.6   6.1   1.1e-05       0.2      68     173 ..     391     501 ..     378     516 .. 0.62

  Alignments for each domain:
  == domain 1  score: 150.3 bits;  conditional E-value: 3.6e-48
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslwlllvlrvlqGlga 99 
                  aa +s++a++i++palp ++a+dl +s+  ++l +t y +++++a  ++G++sd  Grr  +++++l+f+ + +++l a   ++ +l+vlr+lq+ g+
  KKY17196.1  46 TAATFSGFASNIYFPALP-TIADDLSVSVELVNLTVTSYLIFQGIAPSLWGPISDVKGRRIAYCCTFLVFFGA-CIGL-AetKNYVTLIVLRCLQSTGS 141
                 68899*************.******************************************************.6666.5546666************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 ++ +++g  +i+d++++++rg  +g+++ag  + +++gp++gg+la s gWra+f++lai s ++++l  lll+ +++ r+ ++   ++          
  KKY17196.1 142 ASTIAIGSGVIVDITTRTDRGGFMGIFQAGLLVPVAVGPVIGGALAGSMGWRAIFWFLAIYSGVFLLL--LLLFLPETLRSIVANGSLLpsdpvgkypl 238
                 *****************************************************************888..66666666666666666666677777777 PP

       MFS_1 189 ..............kgtgpaplvp...........awkallkdpvlwillialllfffgfsg.lltllplylqevlglsglllaglllallalvgaila 261
                               +     + ++           ++++l++++    +++ l++  +++++ ++++++l +++++gls   ++gl++ + +++++i+ 
  KKY17196.1 239 flyqktttikrdpkS-----APKQlsatkhidvtrPFRILVSKQAAP-IIVFLAVYYAVWQMsITAMSTL-FKDRYGLS-ETEVGLTFIANGAGSMIGT 329
                 777777777544331.....222233333444444688888888664.3333333344888855555555.5*******.899999999999999999* PP

       MFS_1 262 llagrlsdr 270
                 l++g+++d 
  KKY17196.1 330 LVTGKILDI 338
                 *******97 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 1.1e-05
       MFS_1  68 glllfalglllllfa..sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsa....gfslGa.ilgpllggllasslgWravfyilai 159
                 ++ ++++g + + ++   ++ + +v+ +++G++a +  +a++++++d+fp+ e + a + l++    +++ G+ ++ p++       +g  ++f i+  
  KKY17196.1 391 CMSITVFG-WTIQYPhrVHIAVPIVSTFFTGWTAVSTQSAIMTYLVDVFPD-ESAAASASLNLarclFAAGGTsVVMPMVN-----GIGVGLAFTICVT 482
                 34444444.444443444455779***************************.99999999999455544444423333333.....4455667777776 PP

       MFS_1 160 vsllafv..lfllll...p 173
                 v +la+    + + +   +
  KKY17196.1 483 VQILALSgaAAQWIYggaW 501
                 6666622224444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 3203.05
//
Query:       KKY17197.1  [L=286]
Description: putative short-chain oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-40  137.5   0.0    5.1e-40  137.0   0.0    1.2  1  adh_short      short chain dehydrogenase
    1.5e-24   86.9   0.0      2e-24   86.5   0.0    1.1  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    4.5e-07   29.9   0.0    7.2e-07   29.3   0.0    1.2  1  KR             KR domain
    0.00057   19.4   0.0    0.00078   18.9   0.0    1.2  1  DUF1776        Fungal family of unknown function (DUF1776)
     0.0085   15.6   0.1      0.013   14.9   0.1    1.5  1  Epimerase      NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.032   13.3   0.0       0.05   12.7   0.0    1.3  1  RmlD_sub_bind  RmlD substrate binding domain
      0.097   12.2   0.2       0.18   11.3   0.2    1.4  1  NmrA           NmrA-like family


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0   0.0     2e-43   5.1e-40       3     189 ..       6     192 ..       4     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: 137.0 bits;  conditional E-value: 2e-43
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTT.SHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH. CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvt.dreevealvekavkklgkldvLvnNAGitgsgpfselsee. 99 
                  l+tG ssG+G  ++++++++G +v++++rs ekl    k+l+++g  a ++q+Dvt +++++++++ ka++ +gk+dvLvnNA+   +g+ ++l+++ 
  KKY17197.1   6 WLITGSSSGFGELFVQQILARGDRVLATGRSLEKL----KHLEQAG--AAILQLDVTdEQQALNDTITKAIAVYGKIDVLVNNAAYIAFGAWEDLESKp 98 
                 59*******************************99....5555543..889******55566899*********************8888888887643 PP

                 ....HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short 100 ....ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                     ++ + +++N++g++++tra+lp++ +++sG+Iv+++S  g ++ + v+aYs sK+a++gl++ l +e++p gi+   + PG ++T++  +
  KKY17197.1  99 prceQFSAQFATNVFGAIKVTRAILPHFRQRRSGTIVFIGSLSGWQGHPFVSAYSGSKFALEGLVEGLDQEISPFGIQSLLIEPGRFRTKLLST 192
                 322157888********************************************************************************99766 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.0   7.7e-28     2e-24       1     184 [.      10     197 ..      10     220 .. 0.85

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 7.7e-28
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHH.HHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-H.... CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeq.vealveevvekfgklDilvnnagiapklkgpfletsr.... 92 
                   G  sg G+  ++++ ++G +v++t ++ e+   ++ l++  ga++l++DVtde+q +++++ ++ + +gk+D+lvnna++     g  ++++     
    KKY17197.1  10 GSSSGFGELFVQQILARGDRVLATGRSLEK---LKHLEQ-AGAAILQLDVTDEQQaLNDTITKAIAVYGKIDVLVNNAAYIAF--GAWEDLESkppr 100
                   556999******************999998...566654.6999********9875899***********************9..555554322334 PP

                   .HHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG..GGGSTT CS
  adh_short_C2  93 .eefdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTla..asgikg 184
                    e+f   +++n+ +++++++a+lp+++++  g iv + s+++ ++ p  +ay+ +K ale+l+  l  e+ p gi+   + pg  +T++  ++++k 
    KKY17197.1 101 cEQFSAQFATNVFGAIKVTRAILPHFRQRrsGTIVFIGSLSGWQGHPFVSAYSGSKFALEGLVEGLDQEISPFGIQSLLIEPGRFRTKLlsTDNLKA 197
                   59**********************8887778********************************************************9833334444 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   2.8e-10   7.2e-07       3     162 ..       6     165 ..       5     176 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 2.8e-10
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HH.HHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkd.avealleeikaeeppikGvihaAgvlrdklleem 100
                  litG   g+G  ++++++++g r l  ++Rs        +++++le+ ga +  +++Dv+d++ a++ +++++ a  ++i   ++ A  ++ ++ e++
  KKY17197.1   6 WLITGSSSGFGELFVQQILARGDRVL-ATGRS-------LEKLKHLEQAGAAI--LQLDVTDEQqALNDTITKAIAVYGKIDVLVNNAAYIAFGAWEDL 94 
                 79********************9855.69***.......468999***99976..78999986516899******9****************9999988 PP

                 -H.....HHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHH CS
          KR 101 ta.....edleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaey 162
                 ++     e++ + +a  v Ga  + +++ +    ++   +v++ S++g  g++  ++Y+     l++l+e 
  KKY17197.1  95 ESkpprcEQFSAQFATNVFGAIKVTRAILPhfrqRRSGTIVFIGSLSGWQGHPFVSAYSGSKFALEGLVEG 165
                 753344489************9999987655655999*********************9998888888875 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     3e-07   0.00078     113     202 ..     101     187 ..      80     214 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3e-07
     DUF1776 113 lsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqikLGnldl 202
                 ++++  ++ ++++  i ++ a+lp++++   +++ +iv+  s+s     pf +  +    al+ l+e L++e++p +i+   i  G +  
  KKY17197.1 101 CEQFSAQFATNVFGAIKVTRAILPHFRQ---RRSGTIVFIGSLSGWQGHPFVSAYSGSKFALEGLVEGLDQEISPFGIQSLLIEPGRFRT 187
                 689999*********************9...88**********************************************99999998875 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   5.2e-06     0.013       1      80 [.       6      92 ..       6     169 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.2e-06
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HH.....HHHHHHHHH.T-SEEEE--S.---HHHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrs.....alerlfkee.qpdavihlAa.vggvaas 80
                +l+tG +   G  +v+++l++g +v++  r  ++ ++ +++ + + +ld+td++      ++++++ + ++d+ ++ Aa ++  a++
  KKY17197.1  6 WLITGSSSGFGELFVQQILARGDRVLATGRSLEKLKHLEQAGAAILQLDVTDEQqalndTITKAIAVYgKIDVLVNNAAyIAFGAWE 92
                59*****************************999999988888*********99877778888999889999999999977655443 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     2e-05      0.05       3      78 ..       6     105 ..       4     148 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2e-05
                    EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...............T--TTSHHH.HHHHHHHH.....--SEEEE------...HHHHHHSHHHH CS
  RmlD_sub_bind   3 ilvtGanGqlGseLakqlaeeglevlaltre...............eldltdaea.vaellkea.....kpdvvvnaAAyta...vDkaEseeeaa 74 
                    +l+tG++   G   ++q+ ++g  vla++r+               +ld+td+++ +++++ +a     k dv+vn AAy a   +   Es++ + 
     KKY17197.1   6 WLITGSSSGFGELFVQQILARGDRVLATGRSleklkhleqagaailQLDVTDEQQaLNDTITKAiavygKIDVLVNNAAYIAfgaWEDLESKPPRC 101
                    699*******************************************99999976525555544323333889*******98711144555555555 PP

                    HHHH CS
  RmlD_sub_bind  75 yavn 78 
                    ++  
     KKY17197.1 102 EQFS 105
                    5555 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2     7e-05      0.18       2      70 ..       7      74 ..       6      87 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7e-05
                EESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-.TT-HHHHHHHHTT-SEEEE CS
        NmrA  2 lviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgd.lddkeslvealkgvdvvfs 70
                l++G++   G+ +v+ +l++g +v a  R ++  ++k+l++aG+ +++ d +d+++ l+  + ++ +v+ 
  KKY17197.1  7 LITGSSSGFGELFVQQILARGDRVLATGRSLE--KLKHLEQAGAAILQLDvTDEQQALNDTITKAIAVYG 74
                688999999*******************9885..699**********99945677899999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1998.16
//
Query:       KKY17198.1  [L=353]
Description: putative nadp-dependent leukotriene b4 12-hydroxydehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-25   89.3   0.0    2.8e-25   88.3   0.0    1.5  1  ADH_N_2       N-terminal domain of oxidoreductase
    1.2e-16   60.8   0.0    2.1e-16   60.1   0.0    1.4  1  ADH_zinc_N    Zinc-binding dehydrogenase
    1.1e-08   36.1   0.0    2.7e-08   34.9   0.0    1.7  2  ADH_zinc_N_2  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.0   4.7e-29   2.8e-25      14     108 .]      20     120 ..       7     120 .. 0.87

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 4.7e-29
     ADH_N_2  14 tesdfeleeeelp...elkdGevlvralylSvDPymRgrmnd...aksyvepvelgdvmrggavgeVveSknpdfkvGdlVvgllgwqdyavsdgkgle 106
                   ++f+++++++p   +lk+G+v+ + lylS+DP+mRg++++     syv+pv++g++mrg +vg + +Sk+++++vG++  +++gw++ av+d+k+le
  KKY17198.1  20 PGKTFKIQTNPTPkasDLKEGQVIFKSLYLSLDPAMRGWLSSkfnVGSYVPPVKIGETMRGVCVGVIEASKSKSYPVGSYANSMVGWTELAVVDEKHLE 118
                 4578999999998666799********************996232699**************************************************9 PP

     ADH_N_2 107 kv 108
                 k+
  KKY17198.1 119 KI 120
                 86 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   3.4e-20   2.1e-16       2      96 ..     167     260 ..     166     301 .. 0.85

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 3.4e-20
                 HHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE CS
  ADH_zinc_N   2 vGlaavqlAkalGaeviavdsseeklelakk.lGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee 96 
                  G+ a q+Ak  Ga+v ++++ +ek++ +k+ lG d +++yk++d+ ++ + +t ++ +d+ ++ vG g++l+ al+ +kp+ r+v++Gg ++ ++
  KKY17198.1 167 TGSVAGQIAKLKGAKVLGIAGGQEKVRWLKEeLGFDDALDYKDKDFAAKFRTAT-KDLIDLFYDNVG-GEVLNLALSRAKPHARFVMCGGISQYNS 260
                 699**************************************777**********.78**********.**********************554443 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1         2   1.2e+04      38      55 ..     145     163 ..     126     183 .. 0.58
   2 !   34.9   0.0   4.6e-12   2.7e-08       1     133 []     199     340 ..     199     340 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2
                   HHHHHE.EEEEEEEE---- CS
  ADH_zinc_N_2  38 aslkvl.pggGrlvsiggp 55 
                     l+v   + G++v+++g 
    KKY17198.1 145 GMLDVGkVKAGDFVVVSGA 163
                   4444444333777777653 PP

  == domain 2  score: 34.9 bits;  conditional E-value: 4.6e-12
                   TT-SEEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----..........S-EEE-CHHHCTTT-EEEE--GGG...- CS
  ADH_zinc_N_2   1 lGAdevidyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpp.........lsaallkpakkrkgrsvkyeflfsmkas 84 
                   lG+d ++dy+++df+    +at ++ +D+ +d+vgge l   +l+  ++++r+v+ gg +          sa+l+ +  +r   +     +f+ k++
    KKY17198.1 199 LGFDDALDYKDKDFAakfrTAT-KDLIDLFYDNVGGEVL-NLALSRAKPHARFVMCGGISqynsakpegPSARLPIQ--DRPFEPMEGFIVFDYKSQ 291
                   8**************9*95555.788***********99.7777777777***999864478888876422222222..233444444445555555 PP

                   .-HHHHHHHHHHHHHHH----EEEE.EEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  85 aqadileelaalieeGklrpvvdrv.fpleeaaeAhrylesgrarGKiVl 133
                       +l+ela+++ eGk+r   +    +l++a  A+ +l +g  +GK+ l
    KKY17198.1 292 -YPAALTELAQWLVEGKIRRKDTIIkGGLKKAEYALVDLYKGVNTGKLLL 340
                   .5555*************9655544599*******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 2219.81
//
Query:       KKY17199.1  [L=497]
Description: putative mfs [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-29  101.9  25.1    4.4e-29  101.5  23.2    1.8  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5  23.2   2.4e-33   4.4e-29       4     352 ..      55     415 ..      52     416 .. 0.83
   2 !    5.0   0.7   0.00054       9.7     116     172 ..     394     449 ..     373     486 .. 0.70

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 2.4e-33
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlgaga 101
                 +++ls+l+rs++g a +  + e l++s++ + +llt++++++++++  +  +   + +r +  + +l++++ +++ + a +s+   l+lr++ G+ +++
  KKY17199.1  55 MYLLSFLDRSNIGNAKTAGMEEGLHLSGDRYDWLLTIFYIAYILGQCQGFMW-KLMRPRTWGAFVVLWWGIIATCQA-AvQSYKGELALRFFLGWSEAG 151
                 689********************************************99888.668899999999999999956666.425555*************** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpeepperkrkspkeee........ 188
                 + p++ +l++  + + e g+ ig++ +++ l++ ++ +l+  ++s  +    Wr++f++ ++ ++l++ ++++ll ++p+  +  +++e+         
  KKY17199.1 152 FGPSIPYLLSFFYLRHEIGSRIGVFLSCAPLATTFAGALAYGITSGHSklanWRLLFLVEGLPTILMAPVVFFLLADSPVHLSGLTEEEKNvaksrgvr 250
                 ********************************************77779******************99766777666666666666666588888877 PP

       MFS_1 189 .....kgtgpaplvpawkallkdpvlw.illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllal 281
                      +++g+  +++  +  l d   w  +l+ + ++ + fs+l ++lp++  e +g++  + a +l a ++++++ + + ++ l+d+++   r l+++
  KKY17199.1 251 qvgdvERVGGIDFKD-VGRALLDLKAWfTALMYFSCN-VSFSSLPVFLPTI-LEEMGYT-SINAQGLTAPPYFLAFLVTISSTILADKIQQ--RGLVIF 343
                 778887777777777.444444444553333333333.36666*******7.*******.35555559999999999999********776..****** PP

       MFS_1 282 lllllaalglallavtssavllllvlvliGfglgfvfpsllalasdla.ppeeagtasglfntagslggalg 352
                 +l l++ +g++++a+ + + + +++++l+  g++ + + +l ++ ++  +  ++g+ + + n++g+ g +lg
  KKY17199.1 344 VLSLVGGIGYIVCATVEQQGVRYFSVFLAAAGVFPAIANILPWVLNNQgSDTRRGMGIIILNLIGQCGPILG 415
                 ****************99999999888877777777666666666666356899999999999999999998 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.00054
       MFS_1 116 keergraigllsagfslGailgpllgglla.sslgWrav..fyilaivsllafvlfllll 172
                 +++rg++i +l++  ++G+ilg      ++ +s g r+v    i+a+++++ +vl+l l 
  KKY17199.1 394 DTRRGMGIIILNLIGQCGPILG----TRIYpESQGPRYVqgLSICAAFMFFNAVLALSLR 449
                 4589999999999888888777....5556699999998889999999999999655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3206.22
//
Query:       KKY17200.1  [L=530]
Description: putative yfl054c-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-37  128.5  10.2    3.9e-37  128.1  10.2    1.1  1  MIP       Major intrinsic protein


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.1  10.2   2.2e-41   3.9e-37       8     227 .]     236     471 ..     230     471 .. 0.92

  Alignments for each domain:
  == domain 1  score: 128.1 bits;  conditional E-value: 2.2e-41
                 HHHHHHHHHHHHHHHHHHHHHHHCCCSSCSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHHCHT-S-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHH CS
         MIP   8 lravlAEflatlllvfigvgsalnvkkkvsslaslvsvtleavalafglalavlvylaagiSGaHlNPavTlallvarkisllrailYivaQllGaiva 106
                  r++++Eflat++lvf+g+  +l+vk ++ ++     ++++++al++g+a ++ +y+a+g+SGaH NP+v + l+++r ++ ++a+lYivaQ+ Ga+v+
  KKY17200.1 236 FRELFSEFLATMILVFLGTCGNLQVKLSQGDN-----GNYTQSALVWGFATMISIYIAGGVSGAHCNPSVSIFLCIFRGFPSRKAALYIVAQICGALVG 329
                 799***************99999888887663.....5899********************************************************** PP

                 HHHHHHHCHHH............HHHTTTTSSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHCSTTSSSSTCHGHHHHHHHHHHHHHHHHHHHHST-SSH CS
         MIP 107 aallklltkgl............esraglfanslkpglsagqalvvEiiltfvLvlvvfaltddkrkvslgelaplaigllvaliilvgipltGaamNp 193
                 +al +++++                   +f + ++  ++ ++a++ +++ +++    v+a+ dd ++   + + +  igl+ ++     ++ tG   N 
  KKY17200.1 330 VALAYGIYYDGilnfdpqltstsSGSGTAFFTLPNTFVQPTEAFFTDFVSAAIQAGAVLAIGDDSNAPPGAGMHAFIIGLIAFVLASTLGYNTGPQTNM 428
                 *********999********98655566778899999*******************************9888*************************** PP

                 HHHHHHHHHHTH.......STTTTH..HHHHHHHHHHHHHHHH CS
         MIP 194 Arslgpavvlnk.......fedhwv..ylvGPliGailgalvY 227
                 A++l+ ++v+++       +   w    + + + G+i+gal+Y
  KKY17200.1 429 AKDLATRFVAWAvgyqpgmWARAWWaeAWAASIGGGIAGALIY 471
                 *******************66665423477777799999**99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       982  (0.0547716); expected 358.6 (0.02)
Passed bias filter:                      625  (0.0348597); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 3391.02
//
Query:       KKY17201.1  [L=556]
Description: putative quinate permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.8e-124  416.0  19.7   2.1e-124  415.9  19.7    1.0  1  Sugar_tr  Sugar (and other) transporter
    2.8e-26   92.3  52.8    3.9e-24   85.2  24.7    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.02   15.1   0.0      0.024   14.9   0.0    1.3  1  DHH       DHH family


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  415.9  19.7  3.5e-128  2.1e-124       2     452 .]      48     512 ..      47     512 .. 0.96

  Alignments for each domain:
  == domain 1  score: 415.9 bits;  conditional E-value: 3.5e-128
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH.....HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTT CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskee..ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakg 98 
                 + va+lg+llfg+dtgv+g++l+l +f  +fgl + ks+ ++   +  s+ +vs++ +G+++G+++++++ +r+GR+++l+++av+f++ga++q+ a+ 
  KKY17201.1  48 TAVAYLGSLLFGFDTGVMGSVLALDSFKEDFGLPTGKSDFASakNADISSNVVSLLTAGCFFGAITSSIMNERLGRRYTLMVFAVVFLVGAAVQIGAH- 145
                 789***********************************999876667899************************************************. PP

                 TSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-.TTHHHHHHHCCHHHHHHHHHHGGGS---H CS
    Sugar_tr  99 knsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl.nktsn.adgwrillglqlvpallllilllflPESP 195
                   ++  +++gRv++G+g+G+ s ++P+++sE+Ap+++Rg++ +l+q ++++G  +a+++++g+  ++ + +++wri++++q++p  l+li+l+fl ESP
  KKY17201.1 146 -HAIGTIYAGRVIAGFGIGGMSSVTPVFVSENAPANVRGRIAGLFQEFLVIGSTFAYWLDYGVsLHIPKsTKQWRIPVAIQVIPGALMLIGLFFLKESP 243
                 .67************************************************************76776689**************************** PP

                 HHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH..........HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH CS
    Sugar_tr 196 rylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeee.....kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks 289
                 r+l+ kg+++ea ++la +r++e++d+++  e ++++a+++ee      ++wke l+  ++r r+l +++++++qq++G n+i yy+p+ife++g+s +
  KKY17201.1 244 RWLMRKGRHDEALTSLAYIRNSEKEDPAVLHELAEIRAAVDEElhlteGVTWKECLQP-GIRIRFLSAFMIMFCQQFSGTNSIGYYAPQIFETVGVSSK 341
                 ******************************************9*999999*****999.99*************************************9 PP

                 ...HHHHHHHHHHHHHHHHHH.HHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS......CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHS CS
    Sugar_tr 290 ...llvtiivgvvnfvatfva.iflvdrfGRRtllllGaagmaicfvilg..ivalllvaks...kaasivaivfialfialfalgwgpvpwvlvsElf 379
                    l +t+i+g+v++++t +  ++ ++r+GRR+ ll Ga+ m++++ i+g    +++  +ks   ++asi+++v+i+l+++ ++++wgp+pwv+vsE+f
  KKY17201.1 342 nasLFATGIYGTVKVISTGIFlWLGIERLGRRKALLAGALWMMAMMYIIGavLHTHPPDTKStkvSSASIGMVVMIYLYVIGYSASWGPTPWVYVSEIF 440
                 9*9***************9995677*************************765555555555889********************************** PP

                 HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 380 pqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 p+++R+ +  +a+ ++w +nf+i+ ++p + ++ig +++f++f++++   ++fv+f + etkgrtle+++ lf
  KKY17201.1 441 PTRLRAYGVGLAASTQWAFNFVITEITPRAINHIG-WKTFIMFGCFCFGNFLFVWFVIRETKGRTLEDMDILF 512
                 ***********************************.*********************************9876 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2  24.7   6.5e-28   3.9e-24       2     344 ..      52     455 ..      51     464 .. 0.76
   2 !   21.3  20.1   1.8e-08   0.00011       2     178 ..     311     501 ..     310     511 .. 0.75

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 6.5e-28
       MFS_1   2 llaaflsalarsilgpalpl.alaedlg...........ispseigl.lltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa.ssl 85 
                 +l+ +l +++ ++ g++l l   +ed+g            +++     +++l ++g++++++  + + +r+Grr +l++ +++f++g ++ +  a + +
  KKY17201.1  52 YLGSLLFGFDTGVMGSVLALdSFKEDFGlptgksdfasaKNADIS-SnVVSLLTAGCFFGAITSSIMNERLGRRYTLMVFAVVFLVGaAVQIG-AhHAI 148
                 688999**********************99888888664222223.348888888888899999999********999999999999455555.43556 PP

       MFS_1  86 wlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.....Wravfyilaivsllafvlfllllpeepper 179
                  +++++rv++G+g g++ ++  +++++ +p + rgr  gl++ +  +G+ +++ l   ++ ++      Wr +  i  i ++l+++    l++ ++++r
  KKY17201.1 149 GTIYAGRVIAGFGIGGMSSVTPVFVSENAPANVRGRIAGLFQEFLVIGSTFAYWLDYGVSLHIPkstkqWRIPVAIQVIPGALMLI---GLFFLKESPR 244
                 6***********************************************************88889*******************88...4444455555 PP

       MFS_1 180 krkspkeee............................kgtgpaplvp..awkallkdpvlw....illialllfffgfsglltllplylqevlgls... 241
                 +  ++ +                              + +++ +l++   wk+ l +        +++i+++  f g++++ ++ p +  e+ g s   
  KKY17201.1 245 WLMRKGRHDealtslayirnsekedpavlhelaeiraAVDEELHLTEgvTWKECLQPGIRIrflsAFMIMFCQQFSGTNSIGYYAPQI-FETVGVSskn 342
                 55444444446999999999988888888866666664444444444777777777774422335688888888888888*******7.9999***875 PP

       MFS_1 242 .glllaglllallalvgailallagrls.drlgrrrrlllallllllaalglallavt............ssavllll.vlvliGfglgfv.fpsllal 324
                  + l a    ++++ v +i+  ++ +l   rlgrr++ll + l   ++a+++++ av             ssa+++++ +++l+ +g++    p+ +++
  KKY17201.1 343 aS-LFA---TGIYGTVKVISTGIFLWLGiERLGRRKALLAGAL--WMMAMMYIIGAVLhthppdtkstkvSSASIGMVvMIYLYVIGYSASwGPTPWVY 435
                 33.444...55555555555555555555****9666655555..55555555555555599****9988444444443777788877777699***** PP

       MFS_1 325 asdlappeeagtasglfnta 344
                 +s+ +p++ ++  +gl+ ++
  KKY17201.1 436 VSEIFPTRLRAYGVGLAAST 455
                 ***************99854 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 1.8e-08
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigl.lltlyalgaavaslplGrl.sdrfGrrrvlllglllfalglllll..f...a........ssl 85 
                 +++ f+  ++ ++ +  + + + e+ g+s   ++l ++++y+ + ++++ ++ +l ++r+Grr+ ll+g+l++ ++++++   +   +        ss 
  KKY17201.1 311 FMIMFCQQFSGTNSIGYYAPQIFETVGVSSKNASLfATGIYGTVKVISTGIFLWLgIERLGRRKALLAGALWMMAMMYIIGavLhthPpdtkstkvSSA 409
                 55566666666665555555899************666669999999999999997889*****************77777433444034444454334 PP

       MFS_1  86 w.lllvlrvlqGlgagalf.pagaaliadwfpkeergraigllsa.gfslGailgpllggllasslgWravfyilaivsllafvlfllllpeeppe 178
                    ++v+  l  +g++a++ p+  ++++++fp + r+ ++gl+++  +++ ++++ +   ++  ++gW  +f++++ +++  f++  ++++ ++++
  KKY17201.1 410 SiGMVVMIYLYVIGYSASWgPTPWVYVSEIFPTRLRAYGVGLAAStQWAFNFVITEITPRAIN-HIGWK-TFIMFGCFCFGNFLF--VWFVIRETK 501
                 445999999999999666647788*****************9988355555577777777777.****9.9***********997..444433333 PP

>> DHH  DHH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0     4e-06     0.024      24      74 ..     283     555 ..      60     556 .] 0.66

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4e-06
                 C.................................................................................................. CS
                 x.................................................................................................. RF
         DHH  24 l.................................................................................................. 24 
                 +                                                                                                  
  KKY17201.1 283 Vdeelhltegvtwkeclqpgirirflsafmimfcqqfsgtnsigyyapqifetvgvssknaslfatgiygtvkvistgiflwlgierlgrrkallagal 381
                 055555555555555555555555555555555555555555555555555555555555555566666666666666666666666666666666666 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
         DHH  25 ................................................................................................... 24 
                                                                                                                    
  KKY17201.1 382 wmmammyiigavlhthppdtkstkvssasigmvvmiylyvigysaswgptpwvyvseifptrlraygvglaastqwafnfviteitprainhigwktfi 480
                 666666666666666677777777777777777777777777777777777777777788888888888888888888888888888888888888888 PP

                 .................................ECS--TCGGCGCCHHCCCSEEEEEEE-S---SS---SS--EEEE-SSS-H CS
                 .................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         DHH  25 .................................lvDhneksqavegeakeeaedviiiDHHrlgeefetlapilflnepvgst 74 
                                                  +vD n+++ +ve+     +e+ ++i HH+l+++ +t        ++++st
  KKY17201.1 481 mfgcfcfgnflfvwfviretkgrtledmdilfgTVDANTRAVDVEK--MMAEEKDVVIHHHELADTKKTE------APTASST 555
                 888888888888899999999999999999999***********99..88889999*******9555555......4566666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.46
# Mc/sec: 3608.92
//
Query:       KKY17202.1  [L=378]
Description: hypothetical protein UCRPC4_g05695 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.51
# Mc/sec: 2211.30
//
Query:       KKY17203.1  [L=717]
Description: hypothetical protein UCRPC4_g05696 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 4915.69
//
Query:       KKY17204.1  [L=1343]
Description: putative rna binding effector protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-99  324.8  25.4      1e-13   50.9   0.3   12.1 12  KH_1      KH domain
    3.3e-12   46.7   1.0       0.21   11.4   0.2    7.9  7  SLS       Mitochondrial inner-membrane-bound regulator
    3.9e-10   39.4  17.4       0.07   13.0   0.1    7.8  8  KH_2      KH domain
    3.2e-05   23.7   0.6        2.3    8.1   0.0    4.8  4  KH_4      KH domain
  ------ inclusion threshold ------
       0.42   10.7  11.5        3.1    7.9   0.1    5.7  6  KH_5      NusA-like KH domain
          1    8.9   2.8        9.1    5.8   0.1    3.2  3  DUF2067   Uncharacterized protein conserved in archaea (DUF20


Domain annotation for each model (and alignments):
>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.069   2.1e+02      25      65 ..     212     249 ..     208     250 .. 0.68
   2 !   49.9   1.5   6.9e-17   2.1e-13       2      66 .]     258     329 ..     257     329 .. 0.86
   3 !   17.5   0.0   9.2e-07    0.0027       5      65 ..     344     421 ..     339     422 .. 0.87
   4 !   28.0   0.0   4.8e-10   1.4e-06       6      61 ..     438     490 ..     434     495 .. 0.87
   5 !   39.1   0.0   1.6e-13   4.9e-10       1      65 [.     759     816 ..     759     817 .. 0.92
   6 !   37.3   0.0   5.8e-13   1.7e-09       4      65 ..     830     911 ..     828     912 .. 0.89
   7 !   37.5   0.0   5.1e-13   1.5e-09       2      66 .]     924     990 ..     923     990 .. 0.91
   8 !   21.4   0.2   5.4e-08   0.00016       2      59 ..    1001    1061 ..    1000    1068 .. 0.77
   9 !   46.6   0.4   7.5e-16   2.2e-12       1      66 []    1078    1140 ..    1078    1140 .. 0.89
  10 ?   -3.3   0.0       2.8   8.3e+03       4      34 ..    1150    1179 ..    1148    1189 .. 0.66
  11 ?   -2.6   0.0       1.7     5e+03      50      65 ..    1240    1256 ..    1238    1257 .. 0.85
  12 !   50.9   0.3   3.5e-17     1e-13       7      66 .]    1276    1336 ..    1271    1336 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.069
                 HHHHHT-EEEEES.STT...T.-EEEEEESHHHHHHHHHHHH CS
        KH_1  25 IreetgakIkvpk.sedegsderevtisGspeavekAkelie 65 
                 I +++ a++   + ++d   ++ +++ +G+++av +A+++i+
  KKY17204.1 212 INRKSRARVS-QRiGPD---QSIIFEGIGPQDAVRQALKQIS 249
                 5666667766.543332...45555558************97 PP

  == domain 2  score: 49.9 bits;  conditional E-value: 6.9e-17
                 EEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT..........T.-EEEEEESHHHHHHHHHHHHH CS
        KH_1   2 lrilvPsslvgriIGkgGsnIkeIreetgakIkvpksedeg.......sderevtisGspeavekAkeliee 66 
                 +ri+vP s  + iIGkgG+nI++I+++tgakI+vpk ed+        s    v+++G+p a  +A+++ie+
  KKY17204.1 258 VRIPVPVSVRPHIIGKGGANIQSIMQQTGAKIQVPKTEDGIahededdSATIDVEVTGDPIAAGEARKKIED 329
                 79*********************************644444799786777777777**9999*******985 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 9.2e-07
                 EEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEE.....SSTT....................T.-EEEEEESHHHHHHHHHHHH CS
        KH_1   5 lvPsslvgriIGkgGsnIkeIreetgakIkvp.....ksedeg.................sderevtisGspeavekAkelie 65 
                  +P ++ ++i G+ ++n+  +++ ++ +I+vp     +                      +++  +++sG+++a ++A+++ie
  KKY17204.1 344 DIPPEFFPFIAGPHNRNLAALER-ENLRIDVPqyhtwR----HqappqipkpqerpafvsQPDLHIRVSGDRNAAQEARAHIE 421
                 79*********************.9*******665553....344457999999***************************97 PP

  == domain 4  score: 28.0 bits;  conditional E-value: 4.8e-10
                 EGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT...T.-EEEEEESHHHHHHHH CS
        KH_1   6 vPsslvgriIGkgGsnIkeIreetgakIkvpksedegsderevtisGspeavekAk 61 
                 + + ++ +iIG +G ++++  +etg+ I++p+++d   + + +ti+G+ ++ e+ +
  KKY17204.1 438 IQRAYHQFIIGDKGMSLHDFLDETGCAIVLPPDSD---NTENITIIGPIDQLEAGV 490
                 67889************************995444...8***********998765 PP

  == domain 5  score: 39.1 bits;  conditional E-value: 1.6e-13
                 EEEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT...T.-EEEEEESHHHHHHHHHHHH CS
        KH_1   1 tlrilvPsslvgriIGkgGsnIkeIreetgakIkvpksedegsderevtisGspeavekAkelie 65 
                 t+++ +P++++  +IGk+G+nI+++r+e  + I+v+k       +  v+++G++++ e++k++i+
  KKY17204.1 759 TTTFDFPQKFANQLIGKRGENINRLRDEFDVDIQVDK-------SGKVEVKGPQAKAERCKAHIL 816
                 68899**********************99*****984.......357***************996 PP

  == domain 6  score: 37.3 bits;  conditional E-value: 5.8e-13
                 EEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEE..SSTT......................T.-EEEEEESHHHHHHHHHHHH CS
        KH_1   4 ilvPsslvgriIGkgGsnIkeIreetgakIkvp..ksedeg...................sderevtisGspeavekAkelie 65 
                 i+v+s++++ +IG++G++++++++++g++I++p  k   ++                   ++ +e+ i+G++ a ++A+++i+
  KKY17204.1 830 IKVDSKYHRDLIGPKGASVRKLEDRYGVHIQFPtsK-ALNDdqsvadtaselgggrrgrsQPLDEIWIRGPRRAADDARAEIL 911
                 89**********************99*******542.2222578999***********************9999******997 PP

  == domain 7  score: 37.5 bits;  conditional E-value: 5.1e-13
                 EEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEES.STT....T.-EEEEEESHHHHHHHHHHHHH CS
        KH_1   2 lrilvPsslvgriIGkgGsnIkeIreetgakIkvpk.sedeg.sderevtisGspeavekAkeliee 66 
                  +++v +++ ++++GkgGs    +r +tga+I+vp  +e+ + sd   + i+G++++vekAk +++e
  KKY17204.1 924 ATVSVAKKQLPSLMGKGGSAMSALRYDTGAQIDVPYsQEAADaSDRVDIKIRGTKAQVEKAKVALQE 990
                 68999********************99********44777779*******************99875 PP

  == domain 8  score: 21.4 bits;  conditional E-value: 5.4e-08
                  EEEEEGGGHHHHHHTGGGHHHHHHHHHH.T....-E.EEEESSTT...T.-EEEEEESHHHHHH CS
        KH_1    2 lrilvPsslvgriIGkgGsnIkeIreet.g....ak.IkvpksedegsderevtisGspeavek 59  
                  ++i v+++++  +IG gGsnI++I  e  g    a+ +++p+++   s++++++i G+++ v+k
  KKY17204.1 1001 RSIDVDKKYHQTLIGAGGSNIRRIVLEAgGpdnsARvVRFPDRS---SESSTIRIEGPKALVDK 1061
                  5799*********************8874466666767777422...47999999997765665 PP

  == domain 9  score: 46.6 bits;  conditional E-value: 7.5e-16
                  EEEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEES.STT...T.-EEEEEESHHHHHHHHHHHHH CS
        KH_1    1 tlrilvPsslvgriIGkgGsnIkeIreetgakIkvpk.sedegsderevtisGspeavekAkeliee 66  
                  t +++vP ++++ +IG+gG++ k+I+++ ++++++pk ++    + + v isG+  +v++Ak++ie+
  KKY17204.1 1078 TDTVEVPVEKHRTLIGRGGEVRKNIESQFNVSMDIPKqGS----GRTAVKISGTSTDVARAKAHIED 1140
                  5689***********************99*******7343....79*******5555********85 PP

  == domain 10  score: -3.3 bits;  conditional E-value: 2.8
                  EEEGGGHHHHHHTGGGHHHHHHHHHHT-EEE CS
        KH_1    4 ilvPsslvgriIGkgGsnIkeIreetgakIk 34  
                  i vP+ l+  +   +G+  +++r+ + + ++
  KKY17204.1 1150 INVPKALHHHVA-QNGNFFRQLRNSYEVTVD 1179
                  566666555554.789999999985588777 PP

  == domain 11  score: -2.6 bits;  conditional E-value: 1.7
                  EEE.SHHHHHHHHHHHH CS
        KH_1   50 isG.speavekAkelie 65  
                  +sG   e+v+ Ak+lie
  KKY17204.1 1240 LSGsALEKVATAKALIE 1256
                  67888899*******98 PP

  == domain 12  score: 50.9 bits;  conditional E-value: 3.5e-17
                  GGGHHHHHHTGGGHHHHHHHHHHT-EEEEES.STT....T.-EEEEEESHHHHHHHHHHHHH CS
        KH_1    7 PsslvgriIGkgGsnIkeIreetgakIkvpk.sedeg.sderevtisGspeavekAkeliee 66  
                  P+  +++++G+gG+ I++Ire+tg+kI+vpk +       ++ ++i Gs+e+ve+Ak++i+e
  KKY17204.1 1276 PR-SYRLVVGPGGREINRIRERTGCKIQVPKaQGRTTsVADESIEIVGSKEGVEQAKDMILE 1336
                  34.499************************75555449**********************86 PP

>> SLS  Mitochondrial inner-membrane-bound regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.071   2.1e+02      48     134 ..     209     300 ..     203     346 .. 0.68
   2 ?    1.2   0.0      0.09   2.7e+02      61      94 ..     397     430 ..     344     443 .. 0.87
   3 ?    3.6   0.0     0.017        51      37     175 ..     443     587 ..     425     609 .. 0.69
   4 !    9.1   0.0   0.00036       1.1      19     132 ..     751     865 ..     746     887 .. 0.80
   5 !    6.0   0.0    0.0031       9.1      29      90 ..     925     994 ..     905    1016 .. 0.71
   6 !   11.4   0.2   6.9e-05      0.21      63     159 ..    1045    1135 ..    1042    1176 .. 0.72
   7 ?   -1.1   0.0      0.47   1.4e+03      38      88 ..    1280    1338 ..    1257    1340 .. 0.62

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.071
         SLS  48 Lqnlsrihgakielnrs.enklrit..Atkstaeyieasineilknittetvdlsellklskvdklkdllseelleelgrltntvievs.......e 134
                 L+ + r+ +a+++  ++ ++ +++   +++ ++++++++i + l n ++ +++++  +++    ++  +   ++++++++ t++ i+v        +
  KKY17204.1 209 LDGINRKSRARVSQRIGpDQSIIFEgiGPQDAVRQALKQISKELGNQQSVRIPVPVSVRP----HIIGK-GGANIQSIMQQTGAKIQVPktedgiaH 300
                 6666666556655544315556665669999***************99999995555543....22233.678899******999994332222211 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.09
         SLS  61 lnrsenklritAtkstaeyieasineilknitte 94 
                 +++ +  +r+++++++a+ ++a+i++ ++  +++
  KKY17204.1 397 VSQPDLHIRVSGDRNAAQEARAHIERQVEELRRQ 430
                 6777889*****************9988877766 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.017
         SLS  37 fflLltgngklLqnlsrihgakielnrse...nklritAtkstaeyieasineilknittetvd.....lsellkl......skvdklkdl.lseelle 120
                  +++++++g  L+++ ++ g+ i l +++     + i+++  + e+  ++  e++  ++++t+d           +      +    l+ + l++el  
  KKY17204.1 443 HQFIIGDKGMSLHDFLDETGCAIVLPPDSdntENITIIGPIDQLEAGVNKALELATMMQMQTIDprryaT-----GhtvgedAYARGLTRYmLERELAA 536
                 5677888888999998888999998876522246788888665555555555555555666666444332.....26666786777789999******* PP

         SLS 121 elgrltntvievseddnnknskselkisalgedradlakRlLlwalgpsdsnkrl 175
                 el++l ++++ v  +  ++   ++ +i a   ++a +a+  ++ +l  ++++++ 
  KKY17204.1 537 ELEQLHGASVVVP-TV-TNGPLENWQIFAREGKNALQARNDIIKVL--QAYPPSR 587
                 **********932.22.34567788999999999999999998888..3344444 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00036
         SLS  19 eevealgeleevklsprefflLltgngklLqnlsrihgakielnrsenklritAtkstaeyieasineilknittetvdlsellklskvdklkdl.lse 116
                 +e  + g++ +++++++    L++++g  ++ l+++ ++ i++++ ++k+ +++++++ae  +a+i  + k+ + e +   +++  +++ + ++   + 
  KKY17204.1 751 KEEHERGYTTTFDFPQKFANQLIGKRGENINRLRDEFDVDIQVDK-SGKVEVKGPQAKAERCKAHILTFGKKLEDEVFY--NIKV-DSKYHRDLIgPKG 845
                 4444557777888999999999999********999*******76.8*******************************9..5554.4555778888899 PP

         SLS 117 elleelgrltntvie....v 132
                 +  ++l+ +++++i+    +
  KKY17204.1 846 ASVRKLEDRYGVHIQfptsK 865
                 999**********9944321 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.0031
         SLS  29 evklsprefflLltgngklLqnlsrihgakielnrsen........klritAtkstaeyieasineilkn 90 
                 +v + ++++  L+++ g+ +  l+ + ga+i++  s+          ++i++tk+++e +++ ++e  k 
  KKY17204.1 925 TVSVAKKQLPSLMGKGGSAMSALRYDTGAQIDVPYSQEaadasdrvDIKIRGTKAQVEKAKVALQERSKT 994
                 788999999999999999999998888888887655542222222279***************9975443 PP

  == domain 6  score: 11.4 bits;  conditional E-value: 6.9e-05
         SLS   63 rsenklritAtkstaeyieasineilknittetvd.lsellklskvdklkdl.lseelleelgrltntvievseddnnknskselkisalgedradl 157 
                   +++++ri ++k+ ++ +  sin+++++ +++  d ++ ++  +k+ +  +     e+ + +++ +n++ + ++++   +  + +kis+++  ++ +
  KKY17204.1 1045 SESSTIRIEGPKALVDKVYGSINSFVQQKENQVTDtVEVPV--EKHRT--LIgRGGEVRKNIESQFNVSMD-IPKQG--SGRTAVKISGTST-DVAR 1133
                  57899************************999999332233..44444..444489999999999999999.43333..2467788886654.3444 PP

         SLS  158 ak 159 
                  ak
  KKY17204.1 1134 AK 1135
                  44 PP

  == domain 7  score: -1.1 bits;  conditional E-value: 0.47
         SLS   38 flLltgngklLqnlsrihgakielnrsenk........lritAtkstaeyieasineil 88  
                   l  ++ g+ ++ +++  g+ki++ + +++        + i ++k+ +e++++ i e++
  KKY17204.1 1280 RLVVGPGGREINRIRERTGCKIQVPKAQGRttsvadesIEIVGSKEGVEQAKDMILETV 1338
                  55556677777777777777777776655422222222666666666666666666555 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   2.3e-05      0.07      26      59 ..     257     290 ..     246     317 .. 0.81
   2 ?   -4.0   0.0       4.5   1.3e+04      53      70 ..     322     342 ..     318     345 .. 0.64
   3 !   11.4   0.2   7.1e-05      0.21      39      69 ..     772     802 ..     770     804 .. 0.92
   4 ?    0.4   0.0      0.19   5.7e+02      39      53 ..     840     854 ..     828     865 .. 0.83
   5 ?    4.2   0.0     0.013        38      27      68 ..     924     972 ..     914     986 .. 0.77
   6 !    5.7   0.1    0.0042        13      38      54 ..    1012    1028 ..    1002    1030 .. 0.85
   7 ?    2.2   0.1     0.054   1.6e+02      35      58 ..    1087    1110 ..    1070    1125 .. 0.82
   8 !    6.7   0.0    0.0021       6.2      38      59 ..    1281    1302 ..    1278    1313 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.3e-05
                 EEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHH CS
        KH_2  26 rviiviresqpgivIGkgGsnikkigkelrkdie 59 
                  v+i + +s    +IGkgG+ni++i ++ + +i+
  KKY17204.1 257 SVRIPVPVSVRPHIIGKGGANIQSIMQQTGAKIQ 290
                 5666666677778*****************9996 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 4.5
                 HHHHHHHHHHTTC...EEEEE CS
        KH_2  53 elrkdieklegkk...Vklni 70 
                 e+rk+ie +  ++   V+l +
  KKY17204.1 322 EARKKIEDIVSSRtsnVNLRL 342
                 678888777665544466665 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 7.1e-05
                 HHTGGGHHHHHHHHHHHHHHHHHHTTCEEEE CS
        KH_2  39 vIGkgGsnikkigkelrkdieklegkkVkln 69 
                 +IGk+G+ni++++ e+  di++ + +kV+++
  KKY17204.1 772 LIGKRGENINRLRDEFDVDIQVDKSGKVEVK 802
                 6*******************99999999875 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.19
                 HHTGGGHHHHHHHHH CS
        KH_2  39 vIGkgGsnikkigke 53 
                 +IG +G+ ++k++  
  KKY17204.1 840 LIGPKGASVRKLEDR 854
                 7***********976 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.013
                 EEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTC........EEE CS
        KH_2  27 viiviresqpgivIGkgGsnikkigkelrkdieklegkk........Vkl 68 
                 +++ + + q   + GkgGs + +++ + + +i+ + +++        V +
  KKY17204.1 924 ATVSVAKKQLPSLMGKGGSAMSALRYDTGAQID-VPYSQeaadasdrVDI 972
                 567788889999****************99996.4444446666666554 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.0042
                  HHHTGGGHHHHHHHHHH CS
        KH_2   38 ivIGkgGsnikkigkel 54  
                   +IG gGsni++i  e+
  KKY17204.1 1012 TLIGAGGSNIRRIVLEA 1028
                  68***********8877 PP

  == domain 7  score: 2.2 bits;  conditional E-value: 0.054
                  CHHHHHTGGGHHHHHHHHHHHHHH CS
        KH_2   35 qpgivIGkgGsnikkigkelrkdi 58  
                  +   +IG+gG+  k+i+++++  +
  KKY17204.1 1087 KHRTLIGRGGEVRKNIESQFNVSM 1110
                  55679************9988776 PP

  == domain 8  score: 6.7 bits;  conditional E-value: 0.0021
                  HHHTGGGHHHHHHHHHHHHHHH CS
        KH_2   38 ivIGkgGsnikkigkelrkdie 59  
                  +v+G gG++i++i++  + +i+
  KKY17204.1 1281 LVVGPGGREINRIRERTGCKIQ 1302
                  79*************9988775 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.027        81      41      54 ..     268     281 ..     243     287 .. 0.79
   2 !    5.7   0.0    0.0044        13      19      55 ..     748     784 ..     736     785 .. 0.80
   3 !    8.1   0.0   0.00078       2.3      25      56 ..     918     949 ..     908     953 .. 0.90
   4 ?   -0.4   0.1      0.37   1.1e+03      22      50 ..    1072    1098 ..    1057    1102 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.027
        KH_4  41 GrvIGkrGrtldAl 54 
                   +IGk G +++++
  KKY17204.1 268 PHIIGKGGANIQSI 281
                 579*********98 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0044
        KH_4  19 evteeeeeeeveielnvegedlGrvIGkrGrtldAlq 55 
                 ev+ ee e++ + + ++ ++    +IGkrG++++ l+
  KKY17204.1 748 EVEKEEHERGYTTTFDFPQKFANQLIGKRGENINRLR 784
                 577777788888899999999999********99666 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00078
        KH_4  25 eeeeveielnvegedlGrvIGkrGrtldAlqy 56 
                 ++++ + +++v++++l  + Gk G  ++Al+y
  KKY17204.1 918 KDQSFTATVSVAKKQLPSLMGKGGSAMSALRY 949
                 67778899***********************9 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.37
        KH_4   22 eeeeeeeveielnvegedlGrvIGkrGrt 50  
                   +e++ ++++e+ ve++    +IG+ G++
  KKY17204.1 1072 QKENQVTDTVEVPVEKHR--TLIGRGGEV 1098
                  444455555555555554..69***9985 PP

>> KH_5  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1     0.001       3.1      21      45 ..     269     292 ..     264     300 .. 0.86
   2 ?    3.0   0.1     0.037   1.1e+02      21      38 ..     771     788 ..     768     801 .. 0.83
   3 ?   -3.7   0.0       4.5   1.3e+04      22      35 ..     840     853 ..     837     854 .. 0.83
   4 ?    0.7   0.1       0.2   5.9e+02      21      34 ..    1012    1025 ..    1001    1030 .. 0.88
   5 ?    0.6   0.1      0.21   6.2e+02      17      38 ..    1086    1107 ..    1078    1144 .. 0.74
   6 ?   -1.0   0.1      0.66     2e+03      22      44 ..    1282    1303 ..    1280    1325 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.001
        KH_5  21 aivgkkGsrikavsseLkgekidvv 45 
                  i+gk+G++i++++++  g ki+v 
  KKY17204.1 269 HIIGKGGANIQSIMQQT-GAKIQVP 292
                 59**************9.****985 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.037
        KH_5  21 aivgkkGsrikavsseLk 38 
                 +++gk+G++i+ + +e++
  KKY17204.1 771 QLIGKRGENINRLRDEFD 788
                 68**************94 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 4.5
        KH_5  22 ivgkkGsrikavss 35 
                 ++g kG+ ++++++
  KKY17204.1 840 LIGPKGASVRKLED 853
                 799****9999865 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.2
        KH_5   21 aivgkkGsrikavs 34  
                  +++g +Gs+i+ ++
  KKY17204.1 1012 TLIGAGGSNIRRIV 1025
                  79*********998 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.21
        KH_5   17 dpvGaivgkkGsrikavsseLk 38  
                  +  ++++g++G+  k+++s+++
  KKY17204.1 1086 EKHRTLIGRGGEVRKNIESQFN 1107
                  45579**************996 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 0.66
        KH_5   22 ivgkkGsrikavsseLkgekidv 44  
                  +vg +G+ i+ + +   g ki+v
  KKY17204.1 1282 VVGPGGREINRIRERT-GCKIQV 1303
                  699*********9988.777776 PP

>> DUF2067  Uncharacterized protein conserved in archaea (DUF2067)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.65   1.9e+03      31      60 ..     303     334 ..     287     348 .. 0.73
   2 ?    1.1   0.1     0.087   2.6e+02      24      55 ..     961     990 ..     953    1011 .. 0.78
   3 ?    5.8   0.1     0.003       9.1      16      59 ..    1098    1144 ..    1096    1155 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.65
     DUF2067  31 egn..rllievyGtekeikdiirrikellrek 60 
                 e++   + +ev G++ +  +++++i+++++ +
  KKY17204.1 303 EDDsaTIDVEVTGDPIAAGEARKKIEDIVSSR 334
                 4445567788999999999********99983 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.087
     DUF2067  24 eevkievegnrllievyGtekeikdiirrike 55 
                 +e+     ++r+ i++ Gt++++++++  ++e
  KKY17204.1 961 QEA--ADASDRVDIKIRGTKAQVEKAKVALQE 990
                 444..55678*************998876665 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.003
     DUF2067   16 isekiksaeevkievegn...rllievyGtekeikdiirrikellre 59  
                  ++++i+s + v++ + +    r  +++ Gt++++ ++++ i++l+++
  KKY17204.1 1098 VRKNIESQFNVSMDIPKQgsgRTAVKISGTSTDVARAKAHIEDLVKD 1144
                  6778888888888887778899***********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       819  (0.0456802); expected 358.6 (0.02)
Passed bias filter:                      657  (0.0366445); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.01u 0.32s 00:00:01.33 Elapsed: 00:00:00.49
# Mc/sec: 8249.14
//
Query:       KKY17205.1  [L=973]
Description: hypothetical protein UCRPC4_g05698 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.4e-104  348.5   0.0   4.6e-104  348.1   0.0    1.2  1  DUF3500          Protein of unknown function (DUF3500)
    1.6e-40  138.4  22.5    3.5e-21   75.5   7.6    2.4  2  MatE             MatE
     0.0017   18.4   7.1     0.0017   18.4   7.1    2.8  3  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai
     0.0022   18.0   0.0      0.005   16.9   0.0    1.7  1  TFIIB            Transcription factor TFIIB repeat
  ------ inclusion threshold ------
      0.077   12.6   1.0      0.097   12.3   0.0    1.7  2  PepSY_TM         PepSY-associated TM region


Domain annotation for each model (and alignments):
>> DUF3500  Protein of unknown function (DUF3500)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  348.1   0.0  1.3e-107  4.6e-104       2     296 .]     630     963 ..     629     963 .. 0.95

  Alignments for each domain:
  == domain 1  score: 348.1 bits;  conditional E-value: 1.3e-107
     DUF3500   2 gasaeavveaaeaflatLseeqrakallelddeerrkWsnlpfllkrkGlrleelseeqrkaalalLkaalSkeGyekalsimkleevLdege...... 94 
                 g ++e++v+a++++l++ ++eq++k++++++++e+r+Wsn++fll++ Glrleelse+ r+a+l +Lka+lS+eGyeka+++m+++++L+  e      
  KKY17205.1 630 GVPIEEIVDAVNNVLTKTTPEQKDKLTYPINAKEWRAWSNPEFLLRPFGLRLEELSEDLRDAILGVLKATLSPEGYEKAVGAMRINHFLG--Evcevpr 726
                 67899************************************************************************************5..3344444 PP

     DUF3500  95 ......YylalfGePsstepWgwrfeGHHlslnvtvvdgevvsitPtflGaePaeidegeekglriLakeedlalellqsLseeqqkkavlsekap... 184
                       Y++ lfG+Ps+te Wgw+f+GHHl+ln+++  g +++i+P+f+GaeP++id+g++ g++iL+ e +l+l+l+qsL+++ q +a++ ++++   
  KKY17205.1 727 imnqysYNFLLFGTPSTTESWGWSFYGHHLCLNIFLR-GPQIVISPWFTGAEPNIIDDGPWYGTEILNVEGQLGLQLMQSLPQDLQDRAQIFKQMRdpg 824
                 455556*********99********************.************************************************************* PP

     DUF3500 185 .................rdlvganrdnrvvpkeGvavsel.taeqqelllalikeylerlpeeaaeerlaeiekeld.etyfaWiGgtekgdphYyriq 264
                                  r+l+ga+rdnrvvp+eG++vs++ +++q++lll+++++yl +lp+ a+++rl +ie+ +d +tyf+WiG+++++dp+Yyriq
  KKY17205.1 825 mkqtgdlttdrwnkddqRHLCGAFRDNRVVPYEGIRVSSFpSQDQKTLLLKILEQYLLYLPQPARSHRLVHIESFFDsDTYFCWIGDYGDEDPFYYRIQ 923
                 ****************************************55789999***************************6548******************** PP

     DUF3500 265 gpvvliEfdntsg...qn....knHiHtvlRdpn.nDyGk 296
                 +pvv++Efd++sg   +n    k+H+Ht+lR+pn +DyG+
  KKY17205.1 924 NPVVVVEFDHHSGvflNNdepkKFHTHTLLRTPNaGDYGN 963
                 *************665227899****************95 PP

>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   7.6   9.8e-25   3.5e-21       1     159 [.     123     286 ..     123     288 .. 0.95
   2 !   68.6   6.9   1.4e-22   4.9e-19       3     160 ..     351     509 ..     350     510 .. 0.98

  Alignments for each domain:
  == domain 1  score: 75.5 bits;  conditional E-value: 9.8e-25
        MatE   1 PialenllesllslidtllvgrlgskalAavsialsilsllfv.fllglstalttlvgqalG....aknfkrakealrqglilllllsliiallvllfs 94 
                 Pi +++ +++l+++++++ +grlg+ +l+++s++ +++s + + ++lg sta++tl++qa+     a++++ ++ ++++gl++l+++ +++++ ++++s
  KKY17205.1 123 PITISFTFQNLVQAFSIFTCGRLGTFELSVASFGYMFFSATAAmVALGGSTAVDTLCAQAFTsrhtAGKKDYLGIVMQRGLLFLTVFFFALMAPIWWNS 221
                 99***************************************999***************9862222678899*************************** PP

        MatE  95 eqilslftqdeevlelakrylrililgipalalqlvlsgilrgagktkvplyislislllnipln 159
                   i++ ++q+++ +  ++ +l+++++  +a+++ +v++++l+ +    ++  ++ i+++++++ n
  KKY17205.1 222 GRIFRQLGQEADFADTTEVFLKYMLPAGFAQVIAEVFKKFLQVQNHRTAVGWCIGIAAVIGVVAN 286
                 *********************************************99999999999999999876 PP

  == domain 2  score: 68.6 bits;  conditional E-value: 1.4e-22
        MatE   3 alenllesllslidtllvgrlgskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqilslf 101
                 +l++++e++++  + l+++ l+s +++a si ++   ++ +++lgls++ + ++g++lGa++ + a++++r+  +++l+++l+ ++++l  ++   ++f
  KKY17205.1 351 MLTVATEFWCFESIALMAATLDSASVGAQSIIMTSDLVFATIPLGLSVSSSHRIGKSLGAGDGRFARFQARMPYLVALIVGLFECVILLSIRNVYGYIF 449
                 6899*****************************99999999********************************************************** PP

        MatE 102 tqdeevlelakrylrililgipalalqlvlsgilrgagktkvplyislisl.llniplny 160
                 t d +v+e++++ l il++++++++ +  ++gilrg++kt+++ +++++++  +++pl++
  KKY17205.1 450 TRDVDVVEITAKVLFILAVFQCLDISNSGAAGILRGVAKTHLAGACNVFGYyCFGLPLAW 509
                 **********************************************************98 PP

>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.5       1.6   5.8e+03      85      85 ..     192     192 ..     148     224 .. 0.43
   2 !   18.4   7.1   4.8e-07    0.0017       2     119 ..     242     367 ..     241     385 .. 0.80
   3 ?   -3.6   3.9       2.9     1e+04       3      72 ..     464     536 ..     454     543 .. 0.51

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.6
  Polysacc_synt_C  85 l 85 
                       
       KKY17205.1 192 K 192
                      2 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 4.8e-07
  Polysacc_synt_C   2 LailalsiiflslstvlssiLqglgrqkialkalvigalvklilnllli..plfgivGaaiatvlallvvavlnlyalrrllgikl...ellrr 90 
                      L ++ ++ + ++++ v+   Lq  ++  ++ +++ i+a++ ++ n +l+    +gi+Ga +a ++ +  ++v + ++++     k     + rr
       KKY17205.1 242 LKYMLPAGFAQVIAEVFKKFLQVQNHRTAVGWCIGIAAVIGVVANHVLVlkTPLGINGAPLAHAVYQGSTIVAMAVFVSSNKSAKAywgGFSRR 335
                      67888999999**************************************77568********************98888887777777955666 PP

  Polysacc_synt_C  91 ll...kpllaalvmgivvylllllllglllla 119
                       +    ++++ ++ g+++++   + ++ + l+
       KKY17205.1 336 AFedfGTFVFLAITGMLTVATEFWCFESIALM 367
                      65555777777777777666666666555443 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 2.9
  Polysacc_synt_C   3 ailalsiiflslstvlssiLqglgrqkialkalvigal.vklilnllli..plfgivGaaiatvlallvvavl 72 
                       ila+  ++   ++  ++iL g+ ++++a  ++v+g   + l l +++    ++g+ G   + v++ ++ ++l
       KKY17205.1 464 FILAVFQCLDISNSGAAGILRGVAKTHLAGACNVFGYYcFGLPLAWYFCfrLELGLFGLWSGLVCGAAALLLL 536
                      4444444444444445556666666665555555554325555555555333335555444444444444444 PP

>> TFIIB  Transcription factor TFIIB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.4e-06     0.005       4      68 ..      13      77 ..      10      80 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.4e-06
                HHHHTT--HHHHHHHHHHHHHHTTSTTTTSGCTTHHHTTHHHHHHTTTTSS--HHHHHHHSS--S CS
       TFIIB  4 fadaleLpekVadaAkelaklaleekvlkGrspagiaAAclyiAcrkeevkrtqkeissvlqVse 68
                 ++a +L + V + Ak  +++  +++  +    + i A c+++A+ ++ + r++ eis+ + +  
  KKY17205.1 13 DCEAWNLENVVSEVAKSYIRQIESDQDFQTTPWKLISAGCILVASGQSDFPRSLGEISEASGIPR 77
                5999**************************999**************************998865 PP

>> PepSY_TM  PepSY-associated TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   0.3       3.6   1.3e+04     183     193 ..     344     354 ..     343     368 .. 0.60
   2 ?   12.3   0.0   2.7e-05     0.097       5      59 ..     522     584 ..     522     651 .. 0.67

  Alignments for each domain:
  == domain 1  score: -4.5 bits;  conditional E-value: 3.6
                 xxxxxxxxxxx RF
    PepSY_TM 183 lllalTGlvws 193
                 ++la+TG++  
  KKY17205.1 344 VFLAITGMLTV 354
                 34455555443 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 2.7e-05
                 xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxx RF
    PepSY_TM   5 lwlGLivglfllvlalTGallvfk..peieawlnpellvvapaaaaallaa..........eaaaaa 59 
                 lw GL++g+  l+l  TG++l+++  +e +a+++++  ++a ++a++l++a          +     
  KKY17205.1 522 LWSGLVCGAAALLLLQTGLILAIDweKEADAVVAKAAERAAGERAPLLEDAdqalltsrlfK----Y 584
                 6********************97655899999999999999988888865544444422220....2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (973 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 7088.48
//
Query:       KKY17206.1  [L=243]
Description: putative o-methyltransferase family 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-29  101.2   0.0    5.5e-29  100.9   0.0    1.1  1  Methyltransf_3   O-methyltransferase
    1.2e-11   45.5   0.0    2.4e-11   44.6   0.0    1.5  1  Methyltransf_24  Methyltransferase domain
     0.0031   17.5   0.1     0.0079   16.1   0.0    1.6  2  Methyltransf_18  Methyltransferase domain
     0.0034   18.1   0.0      0.026   15.2   0.0    2.3  3  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.016   14.8   0.0      0.096   12.2   0.0    2.0  2  MTS              Methyltransferase small domain
      0.047   14.4   0.0        0.3   11.9   0.0    2.4  1  Methyltransf_12  Methyltransferase domain
      0.076   12.8   0.0       0.11   12.3   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
       0.11   12.0   0.0       0.19   11.2   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
       0.11   13.2   0.0       0.41   11.3   0.0    1.9  2  Methyltransf_11  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.0   2.8e-32   5.5e-29       7     201 ..      34     227 ..      28     234 .. 0.86

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 2.8e-32
                     ..--HHHHHHHHHTTTST...TGGGS--HHHHHHHHHHHHHHT--EEEEE--TTSHHHHHHHTTS-TT-EEEEEES-HHHHHHHHHHHHHTT-GG CS
  Methyltransf_3   7 prehellkeLreatakktd..lsemevsvdegqfLslLvklvnakrvleiGvftGyslLatalalPeDGkilaididreayeialkfiqkagvae 99 
                     p   + ++ L +at +  d  l++++vs+  g+fL l  k + ak++le+G+  Gys +  a + P D k+++++  ++++++a++  + agv++
      KKY17206.1  34 PDSRPNIAALDQATRHASDsgLPSISVSRSFGKFLALQCKASRAKHMLEVGTLGGYSSIWFATENP-DLKVTTVEYSPKHAAVARESHKSAGVDD 127
                     6677788999999999887779****************************************9987.89************************** PP

                     GEEEEES-HHHHHHHHHTSSS...---EEEEEE-S-GGGHHHHHHHHHHTEEEEEEEEEE-TTGGGGGG-SS--SHHHHH.....HHHHHHHHTT CS
  Methyltransf_3 100 kieliegdalkvLeelvkdkk...lpefDfifvDaDkssyvnyyeklleLvkvGgliaiDntLWeGkvveeddeeakalreyravllelnkklae 191
                     +i + eg ++ vL  ++ d +   + +  f+f+DaDk +  +y++ ++++  +G +i++Dn++ +G+v +e  +  + + e ++v+    +++ +
      KKY17206.1 128 RITVLEGAGVDVLPTVLADVQagkKEKIGFAFIDADKPNNYTYFDYAVQMAGKGAIIVVDNAIAKGHVSHERSD-IQFVEEAKKVI----ENVGK 217
                     ***********99998766432227899****************************************987443.34555455555....45566 PP

                     -TTEEEEEE- CS
  Methyltransf_3 192 Dprveislls 201
                     D+rv+ +++ 
      KKY17206.1 218 DKRVDATVMQ 227
                     7777666554 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   1.2e-14   2.4e-11       1     105 [.      81     188 ..      81     189 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 1.2e-14
  Methyltransf_24   1 vEiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalare....aglddrvrlikadseealasla.......agsiDllfiDgghaaea 83 
                      +E+G+  G+s++w++    +n + ++++v+  p   ++aa+are    ag+ddr++++++   ++l+++        +++i ++fiD++  +  
       KKY17206.1  81 LEVGTLGGYSSIWFAT---ENPDLKVTTVEYSP---KHAAVAREshksAGVDDRITVLEGAGVDVLPTVLadvqagkKEKIGFAFIDAD--KPN 166
                      7*************95...5555579*******...888899988889**************99999888899999999********88..899 PP

  Methyltransf_24  84 vledleallprlapggvvlfdD 105
                       + +++ + ++  +g+++++d+
       KKY17206.1 167 NYTYFDYAVQMAGKGAIIVVDN 188
                      9999999*************98 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     4e-06    0.0079      15      79 ..      77     141 ..      68     149 .. 0.91
   2 ?   -2.2   0.0       1.7   3.4e+03      50      71 ..     204     225 ..     182     231 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4e-06
  Methyltransf_18  15 gsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGleklk 79 
                       ++++ +Gt  gy +i+ ++e+   kv+ ++ +++  + a+e+ ++ag++d+i+v  + G+++l 
       KKY17206.1  77 AKHMLEVGTLGGYSSIWFATENPDLKVTTVEYSPKHAAVARESHKSAGVDDRITVLEGAGVDVLP 141
                      578999*******************************************************9985 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.7
  Methyltransf_18  50 plekakeniekagledkievrl 71 
                       +e+ak+ ie+ g ++++++++
       KKY17206.1 204 FVEEAKKVIENVGKDKRVDATV 225
                      4677777777777777776655 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         5     1e+04      32      48 ..      41      58 ..      36      69 .. 0.75
   2 !   15.2   0.0   1.3e-05     0.026       2      55 ..      81     136 ..      80     148 .. 0.89
   3 ?   -0.8   0.0       1.3   2.7e+03      65      65 ..     186     186 ..     134     216 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 5
                     HHHHHHHHHHHHTTT.TE CS
  Methyltransf_25 32 emleaareraeeegl.nv 48
                     ++l++a ++a+++gl ++
       KKY17206.1 41 AALDQATRHASDSGLpSI 58
                     568888888888777544 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.3e-05
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBC CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgda 55 
                      L++G+  G  ++++a++ ++ kvt v++s++  + are ++++g+  ++++++g  
       KKY17206.1  81 LEVGTLGGYSSIWFATENPDLKVTTVEYSPKHAAVARESHKSAGVddRITVLEGAG 136
                      899999***********879***********************9999999888765 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.3
                      E CS
  Methyltransf_25  65 f 65 
                      +
       KKY17206.1 186 V 186
                      1 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.8e-05     0.096      23      84 ..      68     131 ..      64     147 .. 0.84
   2 ?    0.1   0.0      0.26   5.2e+02      94     134 ..     178     217 ..     161     232 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.8e-05
                 HHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEE CS
         MTS  23 LletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vev 84 
                 L+ + ++++++++l +G+  G+ ++++a e+p+++vt v+ + +  ++a+e  ++ +++  ++v
  KKY17206.1  68 LALQCKASRAKHMLEVGTLGGYSSIWFATENPDLKVTTVEYSPKHAAVARESHKSAGVDdrITV 131
                 555566678899***************************************9999999855444 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.26
                 TTS-EEEEEE---STTTCHCHHHHHHHHHHHHHHHEEEEEE CS
         MTS  94 eekkfdlivsNPPfhagkatelavaeeliaeAkeaLkegGe 134
                 + +k  +iv    + +g+  +++   ++++eAk++ ++ G+
  KKY17206.1 178 A-GKGAIIVVDNAIAKGHVSHERSDIQFVEEAKKVIENVGK 217
                 4.555666777778888888888888999999999888876 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00015       0.3       1      44 [.      81     124 ..      81     217 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakre 44 
                      Le+G+  G  +  ++ ++pd+++t v++sp+  + a+e +++ +
       KKY17206.1  81 LEVGTLGGYSSIWFATENPDLKVTTVEYSPKHAAVARESHKSAG 124
                      89*******************************88887776654 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.4e-05      0.11       3      62 ..      76     135 ..      74     216 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.4e-05
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgd 62 
                      +++++l++G+  G+ ++ +a + +p+ +v+ +++s++   +Are  ++ g+d ++++ +g 
       KKY17206.1  76 RAKHMLEVGTLGGYSSIWFA-TENPDLKVTTVEYSPKHAAVARESHKSAGVDdRITVLEGA 135
                      6789*******999999999.88************************99999888887765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.5e-05      0.19       3      72 ..      78     148 ..      76     161 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.5e-05
                     EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSS.EEEEES-CCCHHHHCS-TTS CS
  Methyltransf_4   3 pvvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkN.lrilrgdalkvllelledgs 72 
                     + +le+G+  G + +  A++nPd ++  +E + k  a + ++ +  ++   + +l+g  ++vl+++l+d +
      KKY17206.1  78 KHMLEVGTLGGYSSIWFATENPDLKVTTVEYSPKHAAVARESHKSAGVDDrITVLEGAGVDVLPTVLADVQ 148
                     6789****************************999999999999998865499999999999999998855 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00021      0.41       1      52 [.      81     136 ..      81     149 .. 0.85
   2 ?   -1.0   0.0       1.4   2.8e+03      63      63 ..     187     187 ..     135     218 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00021
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEEC CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl..kvefvvada 52 
                      L+vG+ +G+ + ++a      +v++v++s++  ++a+e  + +g+  +++++++  
       KKY17206.1  81 LEVGTLGGYSSIWFATENpdLKVTTVEYSPKHAAVARESHKSAGVddRITVLEGAG 136
                      899************55569******************999999877777776655 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.4
                      E CS
  Methyltransf_11  63 D 63 
                      D
       KKY17206.1 187 D 187
                      2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1776.31
//
Query:       KKY17207.1  [L=404]
Description: putative beta-lactamase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-41  140.2   0.0    1.2e-40  139.8   0.0    1.1  1  Beta-lactamase  Beta-lactamase
  ------ inclusion threshold ------
      0.014   14.9   0.0       0.02   14.3   0.0    1.2  1  Peptidase_S11   D-alanyl-D-alanine carboxypeptidase


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.8   0.0   1.4e-44   1.2e-40       2     306 ..       5     364 ..       4     378 .. 0.84

  Alignments for each domain:
  == domain 1  score: 139.8 bits;  conditional E-value: 1.4e-44
                     HHHHHHHHHHTTESEEEEEEEE.TTEEEEEEEEEEEETTTTE..EESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBGGGTST......... CS
  Beta-lactamase   2 drlvrelmaqggipGvavavvr.dgkvvldkggGvadleggr..pvtadtlfriaSvtKtftaaavlqlveeGkldLddpVskylP......... 84 
                     +++++  +++g +pG++++ ++ +g+  + k++G ++le+g+  p+ +d +fr+aS+tK++t++a+lq ve+G+++Ldd V   lP         
      KKY17207.1   5 EEAFETSVQDGTLPGAVLLAADkTGTFTYSKAFGRKSLEDGNnePLATDDVFRLASMTKLMTSIAALQIVERGLINLDDDVGSVLPelsqqkvli 99 
                     567888899999*****8888626888999*****999998888*************************************************** PP

                     ......TCTTGGGTTEBHHHHHTTHSSCSSSSTSTTCTSHHHTH......HHHHHHHHHSBSSSSTTSCEE-SHHHHHHHHHHHHHHHTSHHHHH CS
  Beta-lactamase  85 ......efagpgkgkiTlrdLltHtsGlpdlfasdlleeaaada......aellralatlppkyapGtkwgYsntgygllgellekvtgrsleql 167
                           ++ +++k++i+  +LltH++G  + f +++l +  a +       +++      p+ y+pG+ ++Ys +g++++g+++e++tg +le +
      KKY17207.1 100 gfdddePLFRERKNHIRFQHLLTHSAGTGYAFINPDLMKLNAARgrnlmaTKTVVECFDDPLIYEPGEGFQYS-CGIDWAGKVIERLTGDTLESF 193
                     ******99999*****************99988888888877778***************************9.6666***************** PP

                     HHHHTTTTTTSTTEESSTTGGGGGGBEEEEEEETCEEECSCETTHHHHC...........TTTBEEEEHHHHHHHH................... CS
  Beta-lactamase 168 lreeilrpLgmkdtelgppesgdprdaagytgngpearappanlpaeae...........gagglistardlarfl................... 232
                     +r++++rpLg k ++++p+e  +   + +    +  ++++++ l + ++           g++g  + ++d+++ l                   
      KKY17207.1 194 MRQNVWRPLGAKGISFWPQEHPEMSSKLTG---MSVRDESTGGLKNLEKsilnvdptdcfGGQGCSADLTDYMKILhsllvdderllkkestalm 285
                     ******************888866666555...5666666666666666899************************9766666555555555555 PP

                     ...HHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEECECSSEEEEECCH....TEEEEEEESTEEEEEEEECGGTEEEE CS
  Beta-lactamase 233 ...glalegglllsaetlaqltaklssgttrpagiraglglGwvladktga....pgtfghtGggygtyvfvdpeanlvva 306
                        +l ++g + l+++++ +  +++ +  ++p+     +g G  la ++ +    +gt+ ++G   + y+f+d+ea+l+ +
      KKY17207.1 286 fqpQLTKKGHDDLEKTIQVH-EHNALYVGDFPPDCEYDWGIGGILALSSRDggrqKGTLIWSG-LPNMYWFIDREAGLCGT 364
                     55444444444444444333.46666666777777777777777777666699**********.************99876 PP

>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.3e-06      0.02      33      65 ..      53      85 ..      49     121 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.3e-06
                   TS-BE-GGGHHHHHHHHHHHHHHTTSS-TTSEE CS
  Peptidase_S11 33 devveiASltKlmTaylvlealkkgklkeddkv 65
                   d v + AS+tKlmT++  l+ +++g +++dd v
     KKY17207.1 53 DDVFRLASMTKLMTSIAALQIVERGLINLDDDV 85
                   778899**********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 2421.42
//
Query:       KKY17208.1  [L=528]
Description: putative dimethylaniline monooxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-80  271.1   0.0    1.8e-80  270.9   0.0    1.0  1  FMO-like       Flavin-binding monooxygenase-like
    5.3e-15   55.5   0.0    1.1e-13   51.1   0.0    2.4  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    1.3e-09   37.7   0.1    3.7e-07   29.6   0.0    3.0  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    8.3e-08   32.4   0.0    2.3e-07   30.9   0.0    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    2.1e-07   30.4   0.0      4e-05   23.0   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.4e-05   25.2   1.8      0.004   17.1   0.1    3.8  3  NAD_binding_9  FAD-NAD(P)-binding
     0.0045   16.6   0.1        1.2    8.6   0.3    3.0  3  DAO            FAD dependent oxidoreductase
  ------ inclusion threshold ------
        0.1   13.2   0.9         12    6.5   0.1    2.5  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.9   0.0   8.1e-84   1.8e-80       3     452 ..       2     451 ..       1     504 [. 0.87

  Alignments for each domain:
  == domain 1  score: 270.9 bits;  conditional E-value: 8.1e-84
    FMO-like   3 kvaviGaGvsGlasikccleegleptcfersddiGGlwrfke.nveeGr..asiyksvvsnsskemscfsdfpl.pedypnflhnsklleylklfakef 97 
                 kva++GaG+sGl+++k cl eg+e   fe    iGG w+++e +++ G+  +s+y+ +v+n ++e   +sdfp  p  yp++l ++++l+yl+++a  f
  KKY17208.1   2 KVAIVGAGLSGLVTLKECLAEGFEAEVFEAQSHIGGAWKYQEpDPKTGQvhSSMYRGLVTNGCRESFAYSDFPCdPARYPDYLSHQQVLQYLEEYASFF 100
                 8****************************************955677753379********************95789********************* PP

    FMO-like  98 dllkyiqfkttvcsvkkrpdfstsGqwevvtekegkkesavfdavmvctGhhvnphlplesfpGiekfkGqyfhsrdykepevfkgkrvlviGlGnsgg 196
                 dl ++++f+t+v +  +  d +    w v  e++g  +s  +dav  c+Gh+  p++p  sf G e f G ++hs+ y++pe+fkgkrv ++G+G s++
  KKY17208.1 101 DLARHVRFRTQVQQCSQLEDKT----WSVAWEEDGEPKSGNYDAVFACSGHLSTPYMP--SFTGEELFGGLIVHSHTYRDPEAFKGKRVAILGIGSSAA 193
                 ************9999988865....888889*************************9..8************************************** PP

    FMO-like 197 diavelsrtaeqvllstrsGswvlsrvsdsGypwdmllvtrfksllknilptalsnwlvekklnkrfnhenyglkpkkralakepvlndelparilaGa 295
                 dia+el   ae++ + t++G+w++ r           l +  +   +  +p+++s+w ++  l+    ++   l p++++l   p++  ++ +++ +  
  KKY17208.1 194 DIACELVGHAEDIRIVTQRGGWIFPRY-----VLGKTLESYDNRAAQTLIPSSISQWAQQLLLDFVSGKHPPELAPHHKVLEAAPTVRGDFLEKLRMRR 287
                 *************************95.....445556666666667779********999999888888999**************999888877666 PP

    FMO-like 296 vk.vkssvkeltetsaifedgtveedidvvifatGytfafpfle.esl........vkveknkvslykkvfpanlekptlaiiGliqplGsilptvelq 384
                  + +++ + +lt   ++  +g +  ++dv+i +tGy +++p+l  +s          + +++ v ly  + p +  +  l  iGl +  Gs+ p++elq
  KKY17208.1 288 FEvLRTGIDHLTPDGIVTSNGQQ-VKVDVIICCTGYKLDYPYLPlDSYrplsagkdTSDKNKVVNLYELIHPIDYTR--LYFIGLPEIPGSLPPVAELQ 383
                 6516999*******999999876.58****************95333311121111223445578*******87665..899***************** PP

    FMO-like 385 arwavrvlkGlkklpsekelleeitekkekkakrfgesksktiqtdyiayldelaaligakpnllsll 452
                 arw+v +l      p+ ++l + +   + ++ak+f++s ++++ + y+ y d la+ +ga+p ++ l+
  KKY17208.1 384 ARWCVGILAQRIPQPTPDQLAHGVRLLQADQAKLFVHSARHALASPYLPYCDRLASQLGARPTFMKLV 451
                 **************************************************************999875 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   5.1e-17   1.1e-13      75     199 ..      81     215 ..       4     242 .. 0.79
   2 ?    1.9   0.0     0.049   1.1e+02     248     273 ..     304     328 ..     281     368 .. 0.72

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 5.1e-17
  Pyr_redox_3  75 eeklsrkealeYlrevaksfel..piklfeeVesvkk.edegfevetske....tyeAkkviiAtGefdkPnklnipGeek...lvkhyskvkefhky 162
                   ++ls +++l+Yl+e+a+ f+l  +++  ++V++ ++ ed++ +v  +++    + + + v+   G  + P+++++ Gee    l +h++++++++ +
   KKY17208.1  81 PDYLSHQQVLQYLEEYASFFDLarHVRFRTQVQQCSQlEDKTWSVAWEEDgepkSGNYDAVFACSGHLSTPYMPSFTGEELfggLIVHSHTYRDPEAF 178
                  5699******************66699**********88999***9877543333444669999****************7666899*********** PP

  Pyr_redox_3 163 agqkvvViGgknSavDaAlelvrkgaeVtvvtrgsei 199
                  +g++v++ G + Sa+D+A+elv +  ++++vt++  +
   KKY17208.1 179 KGKRVAILGIGSSAADIACELVGHAEDIRIVTQRGGW 215
                  *******************************999877 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.049
  Pyr_redox_3 248 ktedgkkvevkddvvlatGykpdlsf 273
                   t++g++v+v d ++ +tGyk d+  
   KKY17208.1 304 VTSNGQQVKV-DVIICCTGYKLDYPY 328
                  5788999887.666777***998744 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1     0.051   1.1e+02     193     214 ..       2      23 ..       1      36 [. 0.82
   2 !   29.6   0.0   1.6e-10   3.7e-07      93     225 ..      84     212 ..      59     219 .. 0.80
   3 ?    2.5   0.0      0.03        67     323     341 ..     305     323 ..     266     324 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.051
  K_oxygenase 193 riaVvGsGqSaaeifedllrrq 214
                  ++a+vG+G S+   ++++l++ 
   KKY17208.1   2 KVAIVGAGLSGLVTLKECLAEG 23 
                  79*********99999998874 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 1.6e-10
  K_oxygenase  93 psRkefedYlrWvasqle..eqvrfgeeveevepdeeeeeelltveskdaegeee..elearnlvlgvGtepkiPevleklegkervvHsseylerke 186
                  +s ++  +Yl++ as ++   +vrf ++v++ ++ e++    ++v  + ++ge +  ++ a   + g  ++p++P+++ +      +vHs++y   + 
   KKY17208.1  84 LSHQQVLQYLEEYASFFDlaRHVRFRTQVQQCSQLEDK---TWSVAWE-EDGEPKsgNYDAVFACSGHLSTPYMPSFTGEELFGGLIVHSHTYRDPE- 176
                  5556666899999998776578**********999975...6888874.556555115555555555559*******9887778********98887. PP

  K_oxygenase 187 ellakkriaVvGsGqSaaeifedllrrqkkvelklvtrs 225
                     ++kr+a+ G G Saa+i+ +l+ +++  ++++vt++
   KKY17208.1 177 -AFKGKRVAILGIGSSAADIACELVGHAE--DIRIVTQR 212
                  .89*********************99877..66666655 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.03
  K_oxygenase 323 sgeeetlevdavvlATGYr 341
                  + + ++++vd+++++TGY+
   KKY17208.1 305 TSNGQQVKVDVIICCTGYK 323
                  5677899***********7 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0     1e-10   2.3e-07       1      40 [.       5      44 ..       5      61 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1e-10
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev 40
                   IvGaGlsGlv+  ++  +gf+ +++e+++++GG ++  e 
     KKY17208.1  5 IVGAGLSGLVTLKECLAEGFEAEVFEAQSHIGGAWKYQEP 44
                   9********************************9987766 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.8e-08     4e-05       2     174 ..       2     212 ..       1     235 [. 0.84
   2 !    5.2   0.0    0.0045        10     203     240 ..     292     325 ..     265     335 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.8e-08
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCHHHCSHHHHCHHHHHHHHHHHHH...................................HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx...................................xxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve....legtclnggcllskallgvaedaeias...................................evv 60 
                  +v+++G+G  Gl + ++  + g++  ++e     +g++ ++ + +++  ++++  +  ++                                     +
   KKY17208.1   2 KVAIVGAGLSGLVTLKECLAEGFEAEVFEaqshIGGAWKYQEPDPKTGQVHSSMYRGLVTngcresfaysdfpcdparypdylshqqvlqyleeyASF 99 
                  8*******************999999998888989999999999988777766666666689999999*****************9999999999778 PP

                  HCHHHHCCCCHCCT.CEEEEESCEEEEETEEECTCEEEEEESEEEE---..EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHH CS
                  xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  61 kklnqgielllgee.vvkidpgkkkvklekkkegdeekiaydklvlAtG..ssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGv 155
                    l  +++++++++ + ++ ++k +  +  +++g+ ++  yd+++ ++G  s+p  +   G+ e  g l     ++ +  ++ + kr+++ G G  + 
   KKY17208.1 100 FDLARHVRFRTQVQqCSQL-EDK-TWSVAWEEDGEPKSGNYDAVFACSGhlSTPYMPSFTGE-ELFGGL-IVHSHTYRDPEAFKGKRVAILGIGSSAA 193
                  8889999999998856666.344.55555566688899***********88899999*****.777777.5666666666777779************ PP

                  HHHHHHHHHT-EEEEEESS CS
                  xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 156 ElAaalaklgkevtlvear 174
                  ++A++l   ++++ +v +r
   KKY17208.1 194 DIACELVGHAEDIRIVTQR 212
                  ******9999998888665 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0045
                  SCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 203 gtsvkeidgngeklevvledgeeidadlvvvavGvrps 240
                  +t +  ++++g     v+++g+++++d ++ ++G++ +
   KKY17208.1 292 RTGIDHLTPDG----IVTSNGQQVKVDVIICCTGYKLD 325
                  56666666666....69*****************9976 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   1.8e-06     0.004       1     155 [.       4     147 ..       4     148 .. 0.69
   2 ?   -1.1   0.1      0.73   1.6e+03       1      26 [.     184     206 ..     184     211 .. 0.83
   3 ?    2.9   0.0     0.043        96     135     155 ..     302     322 ..     274     323 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.8e-06
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtdqseelllNvpasemslftddp....ptfaeWlrergaleeaeeldpddfvp 92 
                    aivGaG +Gl +l++ la+      +e  +f+ +++  g++w+ ++++     v++s    +  +       + ++         ++ ++  d+++
     KKY17208.1   4 AIVGAGLSGLVTLKECLAE-----GFEAEVFEAQSHI-GGAWKYQEPDPKTGQVHSSMYRGLVTNGcresFAYSDFP--------CDPARYPDYLS 85 
                    8*****************9.....599******8887.789998876654555544444333322122112222333........45667889999 PP

  NAD_binding_9  93 RalyGrYlrdlfeellarlpegvtvevhraevvdleeradgqavlladg.aslaadaVvLAlGh 155
                     + + +Yl+++++ +   l ++v+++   +++ +le++  ++a+ ++++ +s  +daV+ + Gh
     KKY17208.1  86 HQQVLQYLEEYASFFD--LARHVRFRTQVQQCSQLEDKTWSVAWEEDGEpKSGNYDAVFACSGH 147
                    9999999999887765..5567777777777777777777766655544345699999999999 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.73
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspl 26 
                    ai G G +++ ++ +L+ +a   +++
     KKY17208.1 184 AILGIGSSAADIACELVGHA---EDI 206
                    799**************996...444 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.043
  NAD_binding_9 135 avlladgaslaadaVvLAlGh 155
                     +++++g+++++d ++ ++G 
     KKY17208.1 302 GIVTSNGQQVKVDVIICCTGY 322
                    3789***************96 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.3   0.00054       1.2       1      36 [.       2      38 ..       2      58 .. 0.91
   2 ?    1.5   0.0      0.08   1.8e+02     157     205 ..     102     150 ..      75     185 .. 0.69
   3 ?    1.7   0.0     0.068   1.5e+02     161     205 ..     277     325 ..     258     342 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00054
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSG CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiagsga 36
                +v+i+G+G  Gl t  e  ++g    ++e+++ +g ga
  KKY17208.1  2 KVAIVGAGLSGLVTLKECLAEGfeAEVFEAQSHIG-GA 38
                59****************9999*********9999.76 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.08
                 HHTT-EEEESECEEEEEEEETCEEEEE....EECT.EEEEEEEEEEE--GGGHH CS
         DAO 157 ealGveilegtevtgleeedgkvwgve....rttp.gendaadavVnaaGawsd 205
                  a++v++  +t+v+  ++ ++k w v      + + g    +dav  + G+ s+
  KKY17208.1 102 LARHVRF--RTQVQQCSQLEDKTWSVAweedGEPKsG---NYDAVFACSGHLST 150
                 3444555..5568887665567899987654444434...4899******8775 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.068
                 -EEEESECEEEEEEEETCEEEEE....EECT.EEEEEEEEEEE--GGGHH CS
         DAO 161 veilegtevtgleeedgkvwgve....rttp.gendaadavVnaaGawsd 205
                 +++le+ + +++e  + ++ ++     + t+ g+++++d ++ ++G   d
  KKY17208.1 277 GDFLEKLRMRRFEVLRTGIDHLTpdgiV-TSnGQQVKVDVIICCTGYKLD 325
                 5555555555554432233333333323.44377767899******8755 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.019        43       1      35 [.       2      36 ..       2      43 .. 0.85
   2 ?    6.5   0.1    0.0053        12       1      31 [.     182     212 ..     182     228 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.019
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkll 35
                kv++vG+G++gl   ++  + g +  v+e+++++ 
  KKY17208.1  2 KVAIVGAGLSGLVTLKECLAEGFEAEVFEAQSHIG 36
                79**********99888888888888888887775 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0053
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvvers 31 
                 +v+++G G ++ + A++l  ++ ++ +v  +
  KKY17208.1 182 RVAILGIGSSAADIACELVGHAEDIRIVTQR 212
                 799**********************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.48
# Mc/sec: 3279.89
//
Query:       KKY17209.1  [L=420]
Description: putative vacuolar sorting-associated protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-36  125.5   0.1    3.9e-36  124.4   0.1    1.5  1  Vps54     Vps54-like protein


Domain annotation for each model (and alignments):
>> Vps54  Vps54-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.4   0.1   2.2e-40   3.9e-36      28     133 ..      65     168 ..      58     169 .. 0.95

  Alignments for each domain:
  == domain 1  score: 124.4 bits;  conditional E-value: 2.2e-40
       Vps54  28 pslaseilsrllelLklfNsrtcqliLgAgAtrsagLktItakhLalasqslslvialipyvkealerhleeksqesllaefdkvkrdyqehqneihaK 126
                  +++++i++ lle+Lkl+Nsrt+ql+LgAgA  +agL +I++khLalasqsls+++alipy++e+++r+  ++ + s + e+d++kr++q+hq +ih+K
  KKY17209.1  65 LNMTNDISTILLEYLKLYNSRTQQLVLGAGAKLTAGLSNINTKHLALASQSLSFFVALIPYLRECVRRR--PSITGSGITEYDRLKRLFQDHQYSIHDK 161
                 5799*****************************************************************..678888889******************* PP

       Vps54 127 LvsImed 133
                 Lv+I+++
  KKY17209.1 162 LVDIINS 168
                 ****975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2827.89
//
Query:       KKY17210.1  [L=362]
Description: putative camk family protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-41  140.0   0.0    4.2e-40  137.8   0.0    1.8  1  Pkinase         Protein kinase domain
    4.2e-24   85.2   0.0    5.9e-24   84.7   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    6.1e-07   28.6   0.0    8.5e-07   28.1   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase
    0.00011   21.7   0.0     0.0029   17.0   0.0    2.1  2  Kinase-like     Kinase-like
    0.00066   19.7   0.6    0.00066   19.7   0.6    1.9  2  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.8   0.0   1.2e-43   4.2e-40       3     258 ..      53     292 ..      51     295 .. 0.82

  Alignments for each domain:
  == domain 1  score: 137.8 bits;  conditional E-value: 1.2e-43
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHSCTTB--EEE...EEEESSEEEEEEE--TTEBHHHHHHHHSS-- CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkke..kkvlrEikilkklkhpnivrlye...vfeekdelylvleyveggeladllerkgsls 96 
                 kl +lG+GsfG V kav+ ++g++ AvK i+ + ++ ++   k++ rE++il+ l hp++ ++ +   + +++d++ +++ + +g +l++ll+++  ++
  KKY17210.1  53 KLDTLGHGSFGIVHKAVDMHSGEHLAVKSIRLNPRQRNDYsrKTIKREVEILHGLFHPHLAEFRHsqgFQHDDDNVEIFMTLYDG-NLEHLLHERPEFP 150
                 6789**************************998877777677*******************9976221567799999*****995.5******777766 PP

                 HH..HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHS CS
     Pkinase  97 ee..eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltg 193
                 +e   ++++++q+l+++ yl +k+i+HrD+Kp+NiL++e+ +  ++DFGlak  +++    ++ g+ +++APE+l++ + ++kvDv+slG++++  l+ 
  KKY17210.1 151 QEkaLIRELFRQTLSAVVYLAHKSILHRDIKPANILFSENCHWVLADFGLAKFQDEGL---TRAGSGHFMAPEILSGGRQTHKVDVYSLGMTMLYSLSS 246
                 5523689**********************************************99987...99*****************************9999999 PP

                 S-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHH CS
     Pkinase 194 kppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeel 258
                 + + +  +g e     l++              +p  ++     ++ l+ ll++dp++R ta+++
  KKY17210.1 247 HDLRQRIHGAE----PLRE--------------SPDFQTALGR-LSRLNALLREDPEQRSTAQQI 292
                 98888555544....3333..............2222222222.233566677777777777665 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   1.7e-27   5.9e-24       5     196 ..      55     241 ..      52     293 .. 0.83

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 1.7e-27
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH...HHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateee...keelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkfLrkkek 97 
                  ++lG+G+fG V+++       ++ ++ avK+++ + ++++   ++ + +e++i++ l hp++ ++       +++  + ++  +  G+L++ L+++ +
   KKY17210.1  55 DTLGHGSFGIVHKAVDM----HSGEHLAVKSIRLNPRQRNdysRKTIKREVEILHGLFHPHLAEFRHSQGfqHDDDNVEIFMTLYDGNLEHLLHERPE 148
                  68************988....7788999999964433333233889999**************99765544444555666666778**********66 PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvll 195
                   + +   + ++  q  +++ yL++k+++Hrd+   N+L sen +  ++DfGLa+    d+  ++++    + ++mapE+l+ ++ t+k Dv+s G+++
   KKY17210.1 149 FPQEKALIRELFRQTLSAVVYLAHKSILHRDIKPANILFSENCHWVLADFGLAKFQ--DEGLTRAG----SGHFMAPEILSGGRQTHKVDVYSLGMTM 240
                  6666666778999*****************************************87..55555444....5679*********************998 PP

                  H CS
  Pkinase_Tyr 196 w 196
                   
   KKY17210.1 241 L 241
                  4 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   2.4e-10   8.5e-07     312     393 ..     160     231 ..     148     250 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 2.4e-10
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgee..Hsy 393
                     +r+ + +   L  ++ iLHrDi   Nil+      ++++++L+D+ lak  ++        +r G   Fma e+l+g+   H++
      KKY17210.1 160 FRQTLSAVVYLA-HKSILHRDIKPANILFS-----ENCHWVLADFGLAKFQDE------GLTRAGSGHFMAPEILSGGRqtHKV 231
                     566667777788.99***************.....78*************995......36899************96645765 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.021        76      14      57 ..      51      98 ..      37     104 .. 0.74
   2 !   17.0   0.0   8.2e-07    0.0029     128     243 ..     140     244 ..     127     257 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.021
  Kinase-like 14 lvrgellkkgdrsvvfevkdqetgeplavkvfllp....seaskkdle 57
                 + + + l++g +++v ++ d   ge lavk   l+    ++ s+k+++
   KKY17210.1 51 HRKLDTLGHGSFGIVHKAVDMHSGEHLAVKSIRLNprqrNDYSRKTIK 98
                 5667899**********************9765531111455555555 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 8.2e-07
  Kinase-like 128 nkvlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknkt 225
                   ++l++r+e+ ++ + i + l   q +  + +L +k ++h ++++ n+l+ e+   +l +f+ L +  +++        f  pE+l+  g        
   KKY17210.1 140 EHLLHERPEFPQEKALIRE-LF-RQTLSAVVYLAHKSILHRDIKPANILFSENCHWVLADFG-LAKFQDEGLTRAGSGHFMAPEILSG-G-------- 225
                  5556666666444333333.33.46667799******************************7.9999999995555567899999988.2........ PP

  Kinase-like 226 kmthkldaWqlGlvi.yri 243
                  + thk+d++ lG+++ y++
   KKY17210.1 226 RQTHKVDVYSLGMTMlYSL 244
                  469*********9862445 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.6   1.8e-07   0.00066     109     198 ..     112     203 ..      49     206 .. 0.70
   2 ?   -0.8   0.1      0.33   1.2e+03      78     122 ..     245     291 ..     208     358 .. 0.60

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.8e-07
                 .-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHH..HHHHHHHH--S....SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 109 dpaalpladflaqdlellrqlesatarllaselldlleeleeq..vlaalaallpg....elptvllHgDlhpgNllvdpddgrvtGviDfedagl 198
                  +++++ ++f ++d +++++   +    l ++l++ + e+ ++  ++++l +  ++      ++++lH+D++p N+l+ ++ + v  + Df++a+ 
  KKY17210.1 112 LAEFRHSQGFQHDDDNVEIFMTLYDG-NLEHLLHE-RPEFPQEkaLIRELFRQTLSavvyLAHKSILHRDIKPANILFSENCHWV--LADFGLAKF 203
                 44556666666555555555555543.33334444.3444443444555555555556669******************555555..889999875 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.33
                 --EE-SSHHHHHHHHHHHHHHHHHHCCHHCH...-STTTB-SHHCHT CS
         APH  78 pgrsllrklsaaqlpellealgeflaalhqvd..paalpladflaqd 122
                   ++l+++ + a+  +   ++  +l++l+++    +++p ++ +aq+
  KKY17210.1 245 SSHDLRQRIHGAEPLRESPDFQTALGRLSRLNalLREDPEQRSTAQQ 291
                 44444444444444444444444444444442223344444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2311.11
//
Query:       KKY17329.1  [L=865]
Description: putative histidine kinase hhk3p [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.4e-16   58.7   0.0    1.3e-15   57.9   0.0    1.4  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    9.2e-12   45.1   0.0    2.8e-11   43.5   0.0    1.9  1  Response_reg  Response regulator receiver domain
    1.3e-11   44.3   0.1    6.5e-11   42.1   0.0    2.3  2  HisKA         His Kinase A (phospho-acceptor) domain
  ------ inclusion threshold ------
      0.012   15.4   0.0      0.027   14.3   0.0    1.5  1  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   2.9e-19   1.3e-15       2     110 ..     472     579 ..     471     581 .. 0.88

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 2.9e-19
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE.EE.TEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEE.EEE CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveika.se.ddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwv.ese 97 
                 d + L+++++ l+ Nav++ t+ag+i+++i + ++  +l++ v D+G+Gi   d++++f+++ +   +   ++g GlGl+++ k++  m G +++ +se
  KKY17329.1 472 DVPLLKECLQSLLVNAVQA-TTAGSITIKIGTgRDfSTLRFDVIDTGCGIKSGDRQRVFDAYEK---AHAISKGAGLGLTLASKIAAEMSGAVTLvSSE 566
                 567799************8.99*********752278*************************99...344457***********7777***99997777 PP

                 TTTEEEEEEEEES CS
   HATPase_c  98 pgrGttftftlpl 110
                 +g+G+ f+++lp+
  KKY17329.1 567 EGKGSHFRVELPE 579
                 7**********97 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   6.4e-15   2.8e-11       2      97 ..     752     858 ..     751     860 .. 0.83

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 6.4e-15
                   EEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHH....HHHH....ESEEEEESSCSSSEHHHHHHHHHHCT....TTSEEEEEESSTS..HH CS
  Response_reg   2 livdDdplvrellrqlleeegyeevaeaedgkealell....keek....vdlillDinmpgmdGlellkeireed....pelpviiltahse..ee 84 
                   l+vdD+p++++++r ++e++ +     a dg+ea+ ++    +  +    + lil+D++mp+mdG++++k ir+ +      + +i++ a +   ++
    KKY17329.1 752 LLVDDNPINLRIMRMYCEKRSI-PFSDAVDGQEAVSIFtacvN--DdttlPFLILMDLQMPNMDGIQATKAIRRLEagrsLLPSIIFIGADEFfvKP 845
                   89********************.9************9966542..1356799**********************99664233778888877656688 PP

                   HHHHHHHCTESEE CS
  Response_reg  85 davealkagaddf 97 
                    + +al+a ++df
    KKY17329.1 846 AKLKALDARVHDF 858
                   8888888888887 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.6   7.3e+03      49      58 ..     183     196 ..     159     213 .. 0.60
   2 !   42.1   0.0   1.4e-14   6.5e-11       2      63 ..     336     415 ..     335     418 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.6
                 H....HHHHHHHHH CS
       HisKA  49 r....rldhlvedl 58 
                 +    r ++l ++l
  KKY17329.1 183 QlkrqRQRRLMSEL 196
                 33333444444444 PP

  == domain 2  score: 42.1 bits;  conditional E-value: 1.4e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC....................T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCC CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkre..................gklteelkeyletiesearrldhlvedlLdlsr 63 
                 + rf+ g+ H+LrtP+++ilg +e+L +e                     t  + +yl+ti+s+++ l + ++++L l r
  KKY17329.1 336 KDRFFRGITHQLRTPIHGILGSCELLGEElsgmdaaaivipgngthqSVMTSHVSAYLATIRSSGEELMSTINNMLKLNR 415
                 78************************999899999999999888777555577777********************9987 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     6e-06     0.027       7     103 ..     480     575 ..     475     579 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6e-06
  HATPase_c_3   7 laelvdNsldAd.aenvkievnknr.gktgeivieDdGkGmseeelknalrlatsskeakrkstslGk.kGiGlklAsl...slgkkltvitkkeges 98 
                  l  l+ N+++A  a +++i++ + r  +t ++ + D G G++  + ++++   ++++         +k  G+Gl lAs     ++  +t+++++eg+ 
   KKY17329.1 480 LQSLLVNAVQATtAGSITIKIGTGRdFSTLRFDVIDTGCGIKSGDRQRVFDAYEKAHAI-------SKgAGLGLTLASKiaaEMSGAVTLVSSEEGKG 570
                  667899***98536778888887775579*********************998888883.......33357777777641113444688888888888 PP

  HATPase_c_3  99 stltl 103
                  s++++
   KKY17329.1 571 SHFRV 575
                  87765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (865 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.48
# Mc/sec: 5458.12
//
Query:       KKY17330.1  [L=121]
Description: hypothetical protein UCRPC4_g05653 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-24   83.5   5.4    1.2e-23   83.1   5.4    1.2  1  COX6B     Cytochrome oxidase c subunit VIb
     0.0044   17.3   2.4     0.0089   16.3   2.4    1.5  1  Pet191_N  Cytochrome c oxidase assembly protein PET191
  ------ inclusion threshold ------
      0.036   14.3   0.3      0.043   14.1   0.3    1.0  1  Abi_2     Abi-like protein
      0.059   13.5   4.2          2    8.6   0.3    2.2  2  UBA_2     Ubiquitin associated domain (UBA)
      0.074   13.2   2.8        1.2    9.3   2.8    2.3  1  CHCH      CHCH domain
        3.1    7.9  12.0       0.27   11.3   1.6    2.9  3  Cmc1      Cytochrome c oxidase biogenesis protein Cmc1 like


Domain annotation for each model (and alignments):
>> COX6B  Cytochrome oxidase c subunit VIb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   5.4   4.1e-27   1.2e-23       3      75 ..      24      96 ..      22      97 .. 0.97

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 4.1e-27
       COX6B  3 aPnknqrkaCwearddyfkCldkkgeekaekkeeqdekkCkaekkeyesnCaksWveyfkekrvlekreerll 75
                aP++++r +C+e+rd++f+Cldk+++ +a k++ +++kkC++e + ye +Ca+sW++yfkekrv+e++++r++
  KKY17330.1 24 APDRSSRAKCYESRDNFFDCLDKNDIIDAVKHDAEARKKCSKEVEAYETDCARSWIKYFKEKRVMEYNRDRVI 96
                8********************************************************************9976 PP

>> Pet191_N  Cytochrome c oxidase assembly protein PET191
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   2.4     3e-06    0.0089       3      64 ..      32      95 ..      28      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3e-06
    Pet191_N  3 sCkdlrealaeClqksd...CvkkerktpkeClkekaeelpeeCkqlrkayfeCkrgllDmrkRf 64
                +C + r+++ +Cl k d    vk++ +  k+C ke  e+++++C +   +yf+ kr +  +r R+
  KKY17330.1 32 KCYESRDNFFDCLDKNDiidAVKHDAEARKKCSKEV-EAYETDCARSWIKYFKEKRVMEYNRDRV 95
                7**************9722245666678899*9999.9******************998888875 PP

>> Abi_2  Abi-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.3   1.4e-05     0.043      21      91 ..      35     106 ..      20     117 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.4e-05
       Abi_2  21 kkddkf.kgttfeeilalykfDrkLrslllkaieriEialrtaiayelskedeeayldsdnfkkkkkkkkek 91 
                 +++d+f + ++ ++i++ +k D + r+   k +e  E+     ++++++++  ++y+  + ++k+kk++ e 
  KKY17330.1  35 ESRDNFfDCLDKNDIIDAVKHDAEARKKCSKEVEAYETDCARSWIKYFKEKRVMEYNRDRVIDKIKKEDAEM 106
                 44566659*****************************************77999999999999988877654 PP

>> UBA_2  Ubiquitin associated domain (UBA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.3    0.0031       9.1      16      35 ..      45      66 ..      43      71 .. 0.73
   2 ?    8.6   0.3   0.00068         2      12      30 ..      87     105 ..      85     115 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0031
       UBA_2 16 dkdeIieaLekaeks..kssne 35
                dk++Ii+a +++ +   k s+e
  KKY17330.1 45 DKNDIIDAVKHDAEArkKCSKE 66
                9*********998886444444 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00068
       UBA_2  12 tMGYdkdeIieaLekaeks 30 
                  M Y++d +i+ ++k++ +
  KKY17330.1  87 VMEYNRDRVIDKIKKEDAE 105
                 69*************9988 PP

>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.8    0.0004       1.2       1      33 [.      33      75 ..      33      77 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0004
                THHHHHHHHHHHHHCTS........S.TTTTHHHHHHHHH.HH CS
        CHCH  1 CgeefkeylkClkdnsd........e.fskCrkefeafke.Cv 33
                C+e  +++++Cl++n+         e   kC+ke+ea++  C+
  KKY17330.1 33 CYESRDNFFDCLDKNDIidavkhdaEaRKKCSKEVEAYETdCA 75
                777778999999999988888886658***********98786 PP

>> Cmc1  Cytochrome c oxidase biogenesis protein Cmc1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.3      0.05   1.5e+02       9      30 ..      29      51 ..      26      55 .. 0.71
   2 ?   11.3   1.6   9.1e-05      0.27       6      32 ..      56      82 ..      53      84 .. 0.75
   3 ?    1.1   0.4      0.14   4.1e+02      47      68 ..      83     104 ..      82     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.05
        Cmc1  9 arkeCaelikalaeChkd.rllk 30
                +r++C e  + + +C  +  ++ 
  KKY17330.1 29 SRAKCYESRDNFFDCLDKnDIID 51
                67888888888888877655555 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 9.1e-05
        Cmc1  6 kkkarkeCaelikala.eChkdrllkvv 32
                +++ark+C+++++a++ +C++ + +k +
  KKY17330.1 56 DAEARKKCSKEVEAYEtDCAR-SWIKYF 82
                6799***********845776.444444 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.14
        Cmc1  47 keyrtderlkdaekdriiekrl 68 
                 ke+r  e+ +d+  d+i+++  
  KKY17330.1  83 KEKRVMEYNRDRVIDKIKKEDA 104
                 6888999999999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1021  (0.0569468); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 750.25
//
Query:       KKY17331.1  [L=1471]
Description: putative chromatin remodeling complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-27   95.8   0.2    6.9e-27   94.6   0.2    1.7  1  Alpha-L-AF_C  Alpha-L-arabinofuranosidase C-terminal domain
    9.5e-25   87.0   0.0    6.4e-15   54.7   0.0    2.7  2  Actin         Actin
    1.1e-07   31.4   0.0    0.00088   18.6   0.0    2.2  2  Actin_micro   Putative actin-like family
    0.00017   20.5   0.0     0.0098   14.7   0.0    2.3  2  MreB_Mbl      MreB/Mbl protein
  ------ inclusion threshold ------
      0.018   15.4   0.0      0.048   14.1   0.0    1.7  1  FtsA          Cell division protein FtsA
      0.051   12.6   0.0      0.092   11.8   0.0    1.3  1  PilM_2        Type IV pilus assembly protein PilM;


Domain annotation for each model (and alignments):
>> Alpha-L-AF_C  Alpha-L-arabinofuranosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.2   2.3e-30   6.9e-27       1     168 []    1260    1462 ..    1260    1462 .. 0.83

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 2.3e-30
                    EEEEE--S-.S..........SS------HHHHHHHHHHHHHHHHHTTT--EEEES-SBSTT-.....SEEEE...TTE.EEE-HHHHHHHHHHH CS
                    xxxxxxxxx.x..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxx RF
  Alpha-L-AF_C    1 gEyavwyds.p..........glleqqntledAlaeAafltglernaDvVkmasyAplvnviaatqWspdliw...dngkvvgtpsYyvqklfsk 81  
                    gEya+ + + p          + +  + +l  A++eA++l+g ern + Vkm syAp ++++++ +Wspdl++   + +++++++sYy qkl ++
    KKY17331.1 1260 GEYASFQLDtPgdivnytlsnPAHITHPNLIGAIGEAVYLIGAERNPNTVKMSSYAPSLQNLNYINWSPDLVSftaNMDETILSVSYYNQKLLAH 1354
                    78998755553556667777666667779******************************************99999999**************** PP

                    S--SEEEEEEEE--EEEEEEEET................SS--EEEEEEETT-.-SEEEEEEEEE-.STT----SSSTTSSEEEEEEE.....EE CS
                    xxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx....xxx RF
  Alpha-L-AF_C   82 naggtvlpvelespkyeikgege................aeeavevevdleglekaskaevtvlsg.dlkaeNtfenpekvvpkeekl....akv 155 
                    ++g+++lp+++ s++y++  ++                  ++++++++dl+   +  ++++t+l++ +l a N ++n ++v p++ ++    +++
    KKY17331.1 1355 YRGAETLPIDIVSGTYDSLWWVAsideeikaiyfkvvnsGNSSIPLTLDLDV--NWISVNGTILTApSLLAYNYLNNATAVIPVPITDlplsSSA 1447
                    ****************555555455555668999999996667888888875..355689****888****************988876644445 PP

                    -E....EEEEE-TTE CS
                    xx.xx.xxxxxxxxx RF
  Alpha-L-AF_C  156 sg.gk.ftytlpayS 168 
                    ++ ++ ft+++p++S
    KKY17331.1 1448 ENsTSaFTWNVPKWS 1462
                    5433379******99 PP

>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   2.1e-18   6.4e-15       4     199 ..      88     399 ..      85     444 .. 0.85
   2 !   29.2   0.0   1.2e-10   3.6e-07     322     406 ..     623     710 ..     604     711 .. 0.87

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 2.1e-18
       Actin   4 vsavVlDnGssttraGyagedaPkavipslvgkprgrkvea.......................................................... 44 
                 ++++V+ +Gs+++r+G +++  Pk+v p +++k+   ++++                                                          
  KKY17331.1  88 SKVIVIHPGSQNLRIGLSSDALPKTV-PMVIAKKAPMNESEegdaeprpkrmklddgtweepekqfgkefsktytamcndlkarmrlnkrrvlpnskem 185
                 689********************975.889997777655556999****************************************************** PP

       Actin  45 ...................................klyvgdealt...k.rpelevrspvedGvvedwd..aveelwehvlkeelkvdp.......... 92 
                                                    ++  g +al+   + +p +++  p+++G+v++ d  +++ +++ +l       +          
  KKY17331.1 186 vinynrrtpydsipehndplriewtelpsdpkaapEWITGRDALRipdNsKPRYKLYWPIRNGWVNERDykSTQVIFHDILLIVT---Daiksqlglnl 281
                 ***********************************999999966554424999************98872134444444333222...12334567777 PP

       Actin  93 ......eehpllltepplnppkqrekalEivfEkfkvpalylaksavlsafasgkstglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlke 185
                       +++  ++  p l  ++   ++l++++  +++  +++ ++   ++f +g +t ++vD+Ga++tsv+ V +G+ L+++ +++++gG+++te + +
  KKY17331.1 282 rtrrdwAQYGCVFIIPDLYERAYVINLLDMALRDLGFGKVCFIQESLAASFGAGYTTTCIVDIGAQKTSVCCVEEGMCLENSRVNLKFGGHDVTETFIK 380
                 7888888888899999999******************************************************************************99 PP

       Actin 186 llss.....knvevtpryl 199
                 ++ +     +++++++ry 
  KKY17331.1 381 MMLYdhfpyEEINLKRRYD 399
                 9887455555555555554 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 1.2e-10
       Actin 322 peLlanivvtGGnsllpglteRlekelaqlaskgv.kvkiiapee..erkysaWiGGSiLAslgtfqqlwvskqEYeEqGssvverkc 406
                 ++++  i v GG s + g+   le+ l +l +     + i +p+   + +  aW G+S++++l++ ++ w+ + EY+  Gs++   kc
  KKY17331.1 623 RDFYGGIMVIGGGSQVSGFPAFLEERLHALRPMYAkDIMIGTPPRelDAQVVAWKGASVFGKLDNTNDSWIGQMEYDRLGSRLLAYKC 710
                 5799************************98433332678888877789***********************************99998 PP

>> Actin_micro  Putative actin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.9e-07   0.00088      80     191 ..     253     362 ..     236     384 .. 0.80
   2 !   10.5   0.0     8e-05      0.24     327     369 .]     672     714 ..     656     714 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.9e-07
  Actin_micro  80 kiaknikkvsldklfktikeivysLesevllkeelkpkdiFvslvfkdtlnrseilalvdlflnisgfkGilllPesLalclglgiqsaiviseyekh 177
                  ++ k ++ ++ d l+  +  i  +L+ +++++ +         ++ +d+++r  +++l d+ l  +gf  +    esLa  +g g   + +++   ++
   KKY17331.1 253 RDYKSTQVIFHDILLIVTDAIKSQLGLNLRTRRDWAQYG--CVFIIPDLYERAYVINLLDMALRDLGFGKVCFIQESLAASFGAGYTTTCIVDIGAQK 348
                  555666666667777777788888887777777765444..46899**********************9999999**********9988888888888 PP

  Actin_micro 178 ttvslveDyvllds 191
                  t v+ ve  + l+ 
   KKY17331.1 349 TSVCCVEEGMCLEN 362
                  99**9998666554 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 8e-05
  Actin_micro 327 essilrgakvlkelevsKelWlTDkEWnsvrlRvLKeKvLFyl 369
                  + ++++ga v+ +l+ + + W+   E++  + R+L  K LF +
   KKY17331.1 672 QVVAWKGASVFGKLDNTNDSWIGQMEYDRLGSRLLAYKCLFAI 714
                  45789************************************87 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.3e-06    0.0098     115     188 ..     312     382 ..     277     389 .. 0.87
   2 ?    3.1   0.0     0.012        35     276     298 ..     628     650 ..     623     661 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.3e-06
                 HHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEEEEEE..S-SHHHHHHHHHHHH CS
    MreB_Mbl 115 aakkaGarevllieeplaAAiGaglpveepsgnmvvdiGggttevavislggivtsksv..rvaGdeldeaiikyi 188
                 a +++G  +v  i+e+laA  Gag      + + +vdiG+ +t+v  +  g   + ++v  + +G ++ e+ ik +
  KKY17331.1 312 ALRDLGFGKVCFIQESLAASFGAGY-----TTTCIVDIGAQKTSVCCVEEGMCLENSRVnlKFGGHDVTETFIKMM 382
                 56789999****************7.....6789**************9999998876633789999999998876 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.012
                 -EEEESGGGGSBTHHHHHHHHHS CS
    MreB_Mbl 276 givltGGgallkgldkllseetg 298
                 gi++ GGg+++ g+  +l+e+++
  KKY17331.1 628 GIMVIGGGSQVSGFPAFLEERLH 650
                 9*****************99875 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.6e-05     0.048       1      86 [.     340     649 ..     340     668 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.6e-05
                 EEEEE-SSSEEEEEEETTEEEEEEEES-..-HHHHHHH..............HHHHHT--HHHHHHHHHHH--S--....................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxx....................... RF
        FtsA   1 alvDiGagktdvavaedgalvhlrvigv..ggngitkd..............iakalrtaveeAerikikyGsala....................... 60 
                 ++vDiGa+kt+v  +e+g     + +++  gg+ +t+               i    r  +  Ae++k k+ + ++                       
  KKY17331.1 340 CIVDIGAQKTSVCCVEEGMCLENSRVNLkfGGHDVTETfikmmlydhfpyeeINLKRRYDFLLAEELKQKFCTMNEgevsvqlldfhlrasgqdtrkyt 438
                 68****************988866666666********9999988888888888888999999999997666655554444555555555555555555 PP

                 .......................EEEEEHHHHH.................................................................. CS
                 .......................xxxxxxxxxx.................................................................. RF
        FtsA  61 .......................ekeigrkels.................................................................. 70 
                                        ek +gr+++                                                                   
  KKY17331.1 439 fkaydetllapmgffapkvfehdEKLVGRHQIMdrsydlydgqpndprssaqadifqliaphlveaadangnvdgqatgdvngtpmkpqahpqlsklqe 537
                 444444444444444444444444444444444788888888888888888888888888888888888888888888888888888877777777777 PP

                 ................................................................................................GGG CS
                 ................................................................................................xxx RF
        FtsA  71 ................................................................................................ggs 73 
                                                                                                                 ggs
  KKY17331.1 538 aeatprssvtgspapegaegegtpfprpsgttpppipnagftaepdaasaplpidlrddvlpifalddaittsvayaskgderkirdfyggimvigGGS 636
                 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 PP

                 GSTTHHHHHHHHH CS
                 xxxxxxxxxxxxx RF
        FtsA  74 alpnleelaeral 86 
                 ++ ++  ++e+ l
  KKY17331.1 637 QVSGFPAFLEERL 649
                 7777777777765 PP

>> PilM_2  Type IV pilus assembly protein PilM;
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.1e-05     0.092     180     274 ..     337     434 ..     323     441 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.1e-05
      PilM_2 180 kvvaivdigasrttlsvlrdgkivYtr..eqafGgeqltqeivrrYglsleeaekkkrsgslPedyeeevlepflealaqeisra.lqffltssqqnk 274
                 ++ +ivdiga++t+++ +++g  + +   + +fGg+ +t+ +++    ++  +e+   ++ +    +ee+ + f+++   e+s   l+f+l +s q++
  KKY17331.1 337 TTTCIVDIGAQKTSVCCVEEGMCLENSrvNLKFGGHDVTETFIKMMLYDHFPYEEINLKRRYDFLLAEELKQKFCTMNEGEVSVQlLDFHLRASGQDT 434
                 5789*****************99965413678************999999999999988888888999999999999999998652578888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.93u 0.36s 00:00:01.29 Elapsed: 00:00:00.53
# Mc/sec: 8318.32
//
Query:       KKY17332.1  [L=183]
Description: putative adp-ribosylation factor 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-71  239.3   0.0    1.9e-71  239.1   0.0    1.0  1  Arf        ADP-ribosylation factor family
    4.2e-13   49.6   0.0    5.7e-13   49.1   0.0    1.2  1  Roc        Ras of Complex, Roc, domain of DAPkinase
    2.5e-11   43.4   0.0    3.8e-11   42.8   0.0    1.3  1  SRPRB      Signal recognition particle receptor beta subunit
    2.2e-10   40.2   0.2    9.7e-07   28.3   0.0    2.5  2  G-alpha    G-protein alpha subunit
    4.1e-10   39.5   0.0    4.9e-10   39.2   0.0    1.1  1  Ras        Ras family
    1.7e-08   34.1   0.0    2.2e-08   33.8   0.0    1.1  1  Gtr1_RagA  Gtr1/RagA G protein conserved region
    2.6e-06   27.5   0.0    4.2e-06   26.8   0.0    1.3  1  MMR_HSR1   50S ribosome-binding GTPase
     0.0012   18.4   0.0      0.069   12.7   0.0    2.1  2  GTP_EFTU   Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
      0.027   14.0   0.2      0.063   12.8   0.2    1.8  1  FeoB_N     Ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.1   0.0   9.5e-75   1.9e-71       4     174 ..       8     178 ..       5     179 .. 0.97

  Alignments for each domain:
  == domain 1  score: 239.1 bits;  conditional E-value: 9.5e-75
                 HHHGGTT..TTEEEEEEEESTTSSHHHHHHHHHHSSCEECSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHH CS
         Arf   4 ilaklklk.kkelrilllGLDnaGKtTilkklkleelvttvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeak 101
                 +l+ l l+ kke+ril+lGLDnaGKtT+l++lk +e+vtt PTigfnve++++ nl+++vwD+GGq+++Rp+W++Y+++t avifv+Ds+d +Rl +a 
  KKY17332.1   8 VLTGLGLWaKKETRILILGLDNAGKTTLLYRLKIGEVVTTHPTIGFNVESVQYGNLNLSVWDLGGQTSIRPYWRSYYANTAAVIFVIDSTDIDRLGTAA 106
                 66667776599**************************************************************************************** PP

                 HHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHHHH CS
         Arf 102 eeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlses 174
                 +eL+a+l+eeel+++ llv+aNKqD p+a  + e++e+l+l el+ +r+++i++csa+ g+g++eg++wl+++
  KKY17332.1 107 DELAAMLNEEELRDASLLVFANKQDQPGAQGAGEISEALKLGELR-DRNWSIVACSAIDGKGITEGMDWLVQT 178
                 *********************************************.************************997 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   2.9e-16   5.7e-13       1     119 [.      21     131 ..      21     132 .. 0.80

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 2.9e-16
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeWl 99 
                 +++++G  ++GKt+ll r+  +++ + +++tig ++ + ++             +++l++WD++Gq+ +r   ++y+ + a++i+v+ds++ ++l +  
  KKY17332.1  21 RILILGLDNAGKTTLLYRLKIGEVVT-THPTIGFNVESVQY------------GNLNLSVWDLGGQTSIRPYWRSYYANTAAVIFVIDSTDIDRLGTAA 106
                 699********************965.579*****976543............2578*******************************99988776666 PP

                 HHHHHHCS.....SS-EEEEEE-TT CS
         Roc 100 kelkkvag.....kspvilvgnkiD 119
                 +el ++ +     ++ +++ +nk D
  KKY17332.1 107 DELAAMLNeeelrDASLLVFANKQD 131
                 6666554411111445677889988 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   1.9e-14   3.8e-11       2     138 ..      18     146 ..      17     166 .. 0.87

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 1.9e-14
                 ---EEEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHH CS
       SRPRB   2 skpavllvGlsdsGKTslftrLttdsvkktvtSq.essaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEll 99 
                 ++ ++l++Gl ++GKT+l+ rL  ++v +t   +  +  + ++    + +l + D+ G+ ++r     +    ++  +++fv+DSt    ++ + A+ l
  KKY17332.1  18 KETRILILGLDNAGKTTLLYRLKIGEVVTTHPTIgFNVESVQY---GNLNLSVWDLGGQTSIRPYWRSY---YANTAAVIFVIDSTD-IDRLGTAADEL 109
                 6789***************************999778888888...89999************988777...778899*******95.55688899999 PP

                 HHHHHHHHHHTT---EEEEEE-TTSTT---HHHHHHHHH CS
       SRPRB 100 yeilliteklkdavdiliACnKqelflakspklikdaLE 138
                   +l + e l+d  ++l+  nKq+   a+ +  i +aL 
  KKY17332.1 110 AAMLNEEE-LRD-ASLLVFANKQDQPGAQGAGEISEALK 146
                 99999888.444.5799999**************99995 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00018      0.37      21      45 ..      17      41 ..      14      46 .. 0.88
   2 !   28.3   0.0   4.9e-10   9.7e-07     184     280 ..      47     131 ..      37     132 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00018
                ..EEEEEEEESTTSSHHHHHHHHHH CS
     G-alpha 21 krevkllllGqseSGKsTilkqlkl 45
                k+e ++l+lG +  GK+T+l  lk+
  KKY17332.1 17 KKETRILILGLDNAGKTTLLYRLKI 41
                3589****************99986 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 4.9e-10
                 S-----SEEEEEEECT-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GGGTTSEEEEEEE-HH CS
     G-alpha 184 arlktvGisetkfevdsklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkllkntpiiLflnKlD 280
                 ++ +t+G++  +++++ +l++ ++d+gGq s r+ W +++ ++ a+iF++   ++d + +            +   +++n+++l+++++++f nK D
  KKY17332.1  47 TH-PTIGFNVESVQYG-NLNLSVWDLGGQTSIRPYWRSYYANTAAVIFVIDSTDIDRLGTAA----------DELAAMLNEEELRDASLLVFANKQD 131
                 43.7999999999999.********************************9988887754443..........3344455555555555555555555 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   2.5e-13   4.9e-10       1     160 [.      21     179 ..      21     181 .. 0.83

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 2.5e-13
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHH.HHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvk.kwveeik 98 
                 +++++G  + GKt+ll+r   ++  ++ ++Tig++    ++  +  +++l++wD  Gq   +   ++yy ++ +++ v d t+ + + +++ ++   ++
  KKY17332.1  21 RILILGLDNAGKTTLLYRLKIGEVVTT-HPTIGFNVE--SV--QYGNLNLSVWDLGGQTSIRPYWRSYYANTAAVIFVIDSTDIDRLGTAAdELAAMLN 114
                 5899*******************8876.8***87655..44..446799**************************************999846666666 PP

                 HHSTTTSEEEEEEETTTGGG.G-SS-HHHHHHHH..HHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras  99 rvaeenvpivLvGnKvDlee.kravsteegeela..kelglkfletSAktnenveeafeellrei 160
                 +   ++ ++++ +nK D    + a + +e+ +l   ++ +   + +SA + ++++e ++ l++++
  KKY17332.1 115 EEELRDASLLVFANKQDQPGaQGAGEISEALKLGelRDRNWSIVACSAIDGKGITEGMDWLVQTV 179
                 666699***********97644455566666665336777999*************999999887 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   1.1e-11   2.2e-08       1     123 [.      21     132 ..      21     151 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 1.1e-11
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletlk 99 
                 ++L++G  ++GKt++       +   ++++   ti  + ++v  +gnl+l++wD+gGq+++   y+     + + n +++i+V+D++  ++++  +   
  KKY17332.1  21 RILILGLDNAGKTTLL----YRLKIGEVVTTHPTIGFNVESV-QYGNLNLSVWDLGGQTSIR-PYW----RSYYANTAAVIFVIDST--DIDRLGTAAD 107
                 689**********974....568999****************.69*************9865.554....4578899*********9..5555555555 PP

   Gtr1_RagA 100 eilealr.qyspeakvfvlihKmDl 123
                 e+   l  +  ++a++ v+ +K D+
  KKY17332.1 108 ELAAMLNeEELRDASLLVFANKQDQ 132
                 5555554145689999999999996 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   2.1e-09   4.2e-06       1     113 [.      21     128 ..      21     129 .. 0.66

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2.1e-09
                 EEEEEESTTSSHHHHHHHH.HTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETT..TTCSHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinal.tgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlillvvdas..eeklkplde 95 
                 +++i+G  N+GK+tL+ +l +ge++ +      T+  n + v++++ ++ ++D+ G         +++  +++    + ++++v+d++  +  l     
  KKY17332.1  21 RILILGLDNAGKTTLLYRLkIGEVVTTH----PTIGFNVESVQYGNLNLSVWDLGG-QT------SIRPYWRSYYAnTAAVIFVIDSTdiD-RLGTAAD 107
                 689****************556555443....4666777777777788********.33......344444443333789******66531.3445567 PP

                 HHHHHHHH...TTSEEEEEEE CS
    MMR_HSR1  96 eleellee...akkplilvln 113
                 el+++l+e   ++  l++ +n
  KKY17332.1 108 ELAAMLNEeelRDASLLVFAN 128
                 777777665544455555555 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.015        29       5      23 ..      21      39 ..      17      51 .. 0.83
   2 !   12.7   0.0   3.5e-05     0.069      96     193 ..      89     180 ..      50     181 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.015
                EEEEEESTTSSHHHHHHHH CS
    GTP_EFTU  5 nigiighvDhGKtTLtdrL 23
                 i i+g  ++GKtTL+ rL
  KKY17332.1 21 RILILGLDNAGKTTLLYRL 39
                688999999******9888 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.5e-05
                 EEEEEEETTTB..STHHHHHHHHHHHHTTTE...EEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHH CS
    GTP_EFTU  96 gavlvvdaveG..vepqteevlrlalkegvp...iivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealv 189
                  +++v+d+++     +   e++ ++++e+++   + vf NK D+++a+    ++e+  kl          ge ++++ ++v +Sa++g+g+++ ++ lv
  KKY17332.1  89 AVIFVIDSTDIdrLGTAADELAAMLNEEELRdasLLVFANKQDQPGAQGAGEISEAL-KL----------GELRDRNWSIVACSAIDGKGITEGMDWLV 176
                 455666665322255555666666666666666678888888888665555444444.34..........222335899**************999999 PP

                 HHSH CS
    GTP_EFTU 190 ellp 193
                 + ++
  KKY17332.1 177 QTVQ 180
                 9877 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   3.2e-05     0.063       2      93 ..      21     101 ..      20     173 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.2e-05
                 EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGGHHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvdatnler 93 
                 ++ ++G  n+Gkttl+ +l    + v  +p +  + +++++   + ++++ Dl G  s+ +y       r++ +  ++ +v+ v+d+t ++r
  KKY17332.1  21 RILILGLDNAGKTTLLYRLK-IGEVVTTHPTIGFNVESVQY--GNLNLSVWDLGGQTSIRPYW------RSYYA--NTAAVIFVIDSTDIDR 101
                 68899*************95.66789999977766666555..599*********99999874......33333..3335555666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.35s 00:00:00.91 Elapsed: 00:00:00.53
# Mc/sec: 1032.73
//
Query:       KKY17333.1  [L=517]
Description: hypothetical protein UCRPC4_g05656 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-36  124.9   0.0    1.1e-35  123.2   0.0    1.9  1  ECM11     Extracellular mutant protein 11


Domain annotation for each model (and alignments):
>> ECM11  Extracellular mutant protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   0.0   5.9e-40   1.1e-35       1     133 []     361     507 ..     361     507 .. 0.94

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 5.9e-40
       ECM11   1 DyddeelqqmsyseLekepFdhdpaa.............ppaelppsl.dtsetleekleelknlnekeqheffsslsideWeeaGdwlldqfsellkk 85 
                 Dyd   l +m +++L++e+Fdhdp+a              ++++pp+l ++s+++ +++++l++l++ ++++ffssl++++We+ Gd +++qfs l +k
  KKY17333.1 361 DYDYPDLTSMPFTDLQTESFDHDPRApeplvlpppppteRTTTTPPPLsTSSTSIPSTISHLSTLSNPSRQQFFSSLTLSDWEAYGDYFISQFSTLAEK 459
                 899999********************999999987666544446677779************************************************* PP

       ECM11  86 lkeaRrakrktaaefeaeierReeavrkkgeeldrkLeemkegGkevL 133
                  k+aR+++r++a++fe ei++R e+v++k+  +d++L em+ g+kevL
  KKY17333.1 460 TKAARHERRRIATKFELEIQDRYENVERKRLVIDQTLGEMRGGAKEVL 507
                 **********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3348.72
//
Query:       KKY17334.1  [L=1240]
Description: hypothetical protein UCRPC4_g05657 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.29   11.5   4.9       0.44   10.9   0.0    3.2  3  PBP1_TM   Transmembrane domain of transglycosylase PBP1 at N-


Domain annotation for each model (and alignments):
>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.1         1   1.8e+04      56      67 ..     100     112 ..      95     120 .. 0.44
   2 ?    0.7   0.4     0.039   6.9e+02      25      67 ..     525     566 ..     516     569 .. 0.67
   3 ?   10.9   0.0   2.5e-05      0.44      29      85 .]     752     820 ..     741     824 .. 0.58

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 1
     PBP1_TM  56 prk.gkkkkpprk 67 
                 ++k gk++k+ r+
  KKY17334.1 100 SKKvGKERKQTRN 112
                 4443444444333 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.039
     PBP1_TM  25 asrrrrrdddyddeyddeedDdddddeeeevprkgkkkkpprk 67 
                 +s +r r d     +dde++D+  +++ + vp k +++ +p +
  KKY17334.1 525 PSLNRGRSDSGSTVIDDESEDE-AEEDGQIVPVKVEDELHPEQ 566
                 5556677776666677777775.66777788888766665655 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 2.5e-05
     PBP1_TM  29 rrrdddydd........eyddeedDdddddeeeev.......prkgkkkkpprkkrrwlwlliklflvlvvl 85 
                 +r+++d+d         +    ++D dd  e++ +       p+++   k +  k+r++ +li l l+ vv+
  KKY17334.1 752 KREEEDFDPfhretgisH---VQKDRDDRSEKKSSrswrqcmPKRSCFPKREDGKKRRWVILISLGLLSVVV 820
                 577889998888774443...444443333333222112222666544444444555567889999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       804  (0.0448435); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.52
# Mc/sec: 7184.71
//
Query:       KKY17335.1  [L=786]
Description: putative snp3 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-06   27.2   0.0    9.3e-06   26.2   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.031   14.1   0.0      0.084   12.7   0.0    1.7  1  Methyltransf_23  Methyltransferase domain
       0.11   13.2   0.0       0.31   11.8   0.0    1.9  1  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.6e-09   9.3e-06       8      95 ..     522     622 ..     518     623 .. 0.64

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.6e-09
                      SHHHHHHHHTT.SEEEEEES-HHHH..HHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-..C........CHHHHHHHHHHHE CS
  Methyltransf_11   8 Grlaealakrg.arvvgvDlskeml..klakekaseeglkvefvvadaeklpfednsfDlvvssevlhhv..e........dpekalkeiaRvL 88 
                      G+ ++++a ++  ++ +v + + m+  ++++ +++++ ++  + v ++ +lpf+ + fDl+ ++     v  +        + + +l e+ RvL
       KKY17335.1 522 GQGSCDWAWTCaDQYKNVKVYTVMTkqQVVNPHINGPSNHRIVSVPRLWQLPFKTGHFDLISARTLHSMVrsKldvggttsEFDMCLLECLRVL 615
                      45555555333333333333333432234466666666643445667779***********88865555576266777777************* PP

                      EEEEEEE CS
  Methyltransf_11  89 kpgGllv 95 
                      kpgG+l 
       KKY17335.1 616 KPGGYLE 622
                      *****96 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.4e-05     0.084      25     123 ..     516     629 ..     486     674 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.4e-05
  Methyltransf_23  25 rvLdiGcGtG.illevlrengfsvtgvDlspeaveiaekakkaqkdqfdeq........eaaepqgkfdlIvlrevlehvpdpp.......... 99 
                      rvLd+G      ++  ++++ ++v ++  + +  + + +++ + ++++           + +++ g+fdlI++r +   v++            
       KKY17335.1 516 RVLDLGGQGScDWAWTCADQYKNVKVYTVMTK--QQVVNPHINGPSNH--RivsvprlwQLPFKTGHFDLISARTLHSMVRSKLdvggttsefd 605
                      55555544433454444444333333333211..11111222222222..0234444445666899***************988899******9 PP

  Methyltransf_23 100 ellrqiatllkpgGylllseplas 123
                      + l    + lkpgGyl++s+ +a 
       KKY17335.1 606 MCLLECLRVLKPGGYLEFSVMDAA 629
                      889999999**********98765 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.1e-05      0.31      54      97 .]     568     619 ..     517     619 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.1e-05
                      BCCGBSSSTTTEEEEEEESTGG........G.SSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  54 daedlpfedgsfDlvvssgalh........h.lsdedlekalkeiarvLkpgG 97 
                       + +lpf+ g+fDl+ ++ +lh        +  + ++ + +l e+ rvLkpgG
       KKY17335.1 568 RLWQLPFKTGHFDLISAR-TLHsmvrskldVgGTTSEFDMCLLECLRVLKPGG 619
                      55689************4.667444444442233456688************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 5170.97
//
Query:       KKY17336.1  [L=178]
Description: putative ribulose-phosphate 3-epimerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-31  109.6   0.0    2.5e-30  105.3   0.0    2.0  1  Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
     0.0097   15.7   0.2       0.49   10.2   0.0    2.1  2  QRPTase_C       Quinolinate phosphoribosyl transferase, C-ter


Domain annotation for each model (and alignments):
>> Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.3   0.0   2.8e-34   2.5e-30      70     198 .]       7     154 ..       3     154 .. 0.85

  Alignments for each domain:
  == domain 1  score: 105.3 bits;  conditional E-value: 2.8e-34
                     HHCHHHHHHCT-SEEEEE-S.................T-TTHHHHHHHHHHTTSEEEEEE-TT--GGGGTTTCC......C-SEEEEESS-TT-S CS
  Ribul_P_3_epim  70 drivpefaeagasiisvHaE.................alehlkrtiqeikeaGakaglvlnpatplealeylle......kldlvllmsvePgfg 141
                      r+v++f +ag ++ ++H E                   ++++++i+ i+e+G+ ag++++p+t +++l  +le      + d++l+m+v Pgfg
      KKY17336.1   7 MRWVKDFKKAGCDLYCFHWEaamtsvaaqdpadkettRKTNPTELIRYIHEQGMLAGVAIKPETSVDVLWPILEaekdedRPDMILIMTVHPGFG 101
                     589999999999999999997776666555544332223457889************************99996222222579************ PP

                     S----CCHHHHHHHHHHHHHHHT---EEEEESS--TTTCHHHHHHT--EEEESHHHH CS
  Ribul_P_3_epim 142 GQkFipevlekikkvrklidekeldlkievDGGvkldnieqiaeagadvlVagsavf 198
                     GQkF+ + l+k+ ++rk +++    l ievDGG+ + +i+q+a+aga+v+Vagsavf
      KKY17336.1 102 GQKFMASELPKVTALRKQYPN----LDIEVDGGLAEGTIDQAADAGANVIVAGSAVF 154
                     ********************8....99*****************************9 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.1    0.0051        46       8      40 ..      29      63 ..      25      97 .. 0.82
   2 !   10.2   0.0   5.4e-05      0.49     118     161 ..     113     156 ..     103     162 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0051
                HHHHHHCTSSEEEE-S---TT..THHHHHHHHHHT CS
   QRPTase_C  8 mveaaksakvrildTRkttPg..lrllekyAvliG 40
                m + a++  +    TRkt P   +r+++++ +l+G
  KKY17336.1 29 MTSVAAQDPADKETTRKTNPTelIRYIHEQGMLAG 63
                55555566677789******555999999999887 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 5.4e-05
                 HHHHHHHSTTSEEEEESS--TTTHHHHHCTT-SEEEECHHCHTB CS
   QRPTase_C 118 veelkeknkrvlievSGgvtlenveeyaksgvdvisvgalthsv 161
                 v+ l+++ +++ iev Gg+ + ++ + a+ g +vi  g+++ ++
  KKY17336.1 113 VTALRKQYPNLDIEVDGGLAEGTIDQAADAGANVIVAGSAVFGA 156
                 5557889999****************************998666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.33s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 1120.80
//
Query:       KKY17337.1  [L=546]
Description: hypothetical protein UCRPC4_g05660 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0051   16.9   0.0      0.016   15.4   0.0    1.9  2  SH3BGR    SH3-binding, glutamic acid-rich protein
  ------ inclusion threshold ------
       0.13   12.5   0.8         25    5.0   0.0    2.4  2  DUF3347   Protein of unknown function (DUF3347)


Domain annotation for each model (and alignments):
>> SH3BGR  SH3-binding, glutamic acid-rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.8e-06     0.016       3      50 ..     197     244 ..     195     268 .. 0.87
   2 ?   -3.0   0.1      0.95   8.5e+03      40      53 ..     405     413 ..     377     432 .. 0.50

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.8e-06
                 EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHH CS
      SH3BGR   3 lkvyvasssgskeikkkqqevlriLdakkiefdevDitkdeeerelmr 50 
                 l  y + ++gs  i    ++  +iL a++i+f  +D+++de+ r l  
  KKY17337.1 197 LYLYTSLTAGSSHIITATSRLETILKANRIPFRALDVATDEKARMLWG 244
                 567889999********************************9997654 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.95
                 TT-HHHHHHHHHCS CS
      SH3BGR  40 tkdeeerelmrena 53 
                 +kde  +     ++
  KKY17337.1 405 AKDETGK-----KV 413
                 2222222.....22 PP

>> DUF3347  Protein of unknown function (DUF3347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0028        25      54      82 ..     271     299 ..     259     315 .. 0.86
   2 ?    5.0   0.7    0.0028        26      60     104 ..     370     414 ..     340     431 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0028
     DUF3347  54 lesYlklkdALvaddakeakkaakkleek 82 
                 +++Y +lkd ++a+d ++a++a+++ +++
  KKY17337.1 271 WNEYGELKDQIAATDPTKASSASTATATT 299
                 689******************99988765 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0028
     DUF3347  60 lkdALvaddakeakkaakkleeklkavdtsklkekekkelkeise 104
                 +  AL ++ a++akkaa++ +ekl+a+++s  ++k+k e+ ++ +
  KKY17337.1 370 ITLALRQAGAEAAKKAADQKSEKLAALKVSLSTDKAKDETGKKVD 414
                 66799999999****************999888888776655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.58
# Mc/sec: 2826.67
//
Query:       KKY17338.1  [L=163]
Description: hypothetical protein UCRPC4_g05661 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.2    8.4   5.6        2.8    8.1   5.6    1.4  1  PUMA      Bcl-2-binding component 3, p53 upregulated modulato


Domain annotation for each model (and alignments):
>> PUMA  Bcl-2-binding component 3, p53 upregulated modulator of apoptosis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6   0.00016       2.8      33     121 ..      45     130 ..      11     153 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00016
        PUMA  33 avscglceaglsprvaadsllpapaaalaapsllpvavsllsqrrleGGarsrararrplaGpqpslspaeqhlespvaggptqaapgv 121
                   sc+   +++++r a+++++ ++ aa+a +++ pv  +     +l  G   ++ a+  ++G     + a    e+ +ag  t  ap  
  KKY17338.1  45 ITSCAATVTDCPARSATETFVSTTLAAIA-TTVCPVSEASSIISNLPSGQTVASDATAEVTGAPT--AAASTAAETTIAGNATYIAPSS 130
                 5699999************9999988888.8999*999999999999999999999998888643..4566777888889888888864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1230  (0.0686039); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.33s 00:00:00.86 Elapsed: 00:00:00.52
# Mc/sec: 950.75
//
Query:       KKY17339.1  [L=1722]
Description: putative u5 small nuclear ribonucleoprotein component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-92  309.3   0.8    8.9e-92  308.4   0.8    1.4  1  Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosp
    1.6e-47  161.6   0.0    4.2e-47  160.2   0.0    1.7  2  GTP_EFTU      Elongation factor Tu GTP binding domain
    1.8e-36  125.4  10.8      5e-36  124.0  10.8    1.8  1  EFTUD2        116 kDa U5 small nuclear ribonucleoprotein comp
    3.1e-23   81.8   0.0      8e-23   80.5   0.0    1.7  1  EFG_IV        Elongation factor G, domain IV
    6.6e-19   67.7   0.0    1.9e-18   66.3   0.0    1.8  1  EFG_C         Elongation factor G C-terminus
      8e-08   32.6   0.0    1.8e-07   31.4   0.0    1.6  1  GTP_EFTU_D2   Elongation factor Tu domain 2
    1.9e-07   31.1   0.2    1.4e-06   28.3   0.0    2.2  2  EFG_II        Elongation Factor G, domain II
     0.0002   21.4   0.2    0.00076   19.6   0.1    2.1  2  MMR_HSR1      50S ribosome-binding GTPase
    0.00085   18.8   0.0        0.5    9.7   0.0    2.3  2  Sulfatase     Sulfatase


Domain annotation for each model (and alignments):
>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.4   0.8   4.5e-95   8.9e-92       1     357 []    1206    1544 ..    1206    1544 .. 0.96

  Alignments for each domain:
  == domain 1  score: 308.4 bits;  conditional E-value: 4.5e-95
                    EEEEEETT-BTTHHHHHGSTSHHHHHHHHHSEEESEEE-SSS-SHHHHHHHHHHSS-HHHHS--SSSEEETTTTEEEEEETTTTGG...GGGCTT CS
  Phosphodiest    1 vlvislDGlradlldrlaellpnlaaLakegvsapnlrpvfPtlTfpnhaslvTGlyPgeHGivgNtfydrktgeyvvfvtededa...prwwqg 92  
                    ++ islDG+rad l+r  +l+p l++L++egvs +++ p+fP++Tfpnh +lvTGlyP++HG+vgNtf+d+++++  +f  +d+++   p+ww  
    KKY17339.1 1206 TIYISLDGFRADFLNR--DLTPTLNKLISEGVSPRYMNPSFPSVTFPNHFTLVTGLYPESHGVVGNTFWDPGLEA--EFYYTDPARsmqPEWWMA 1296
                    689*************..*********************************************************..77777777779******* PP

                    S-HHHHHHHTHTTCEEEESETTTTSEBTTCT.SC.TBHHSBTCT.CSTTSCHHHHHHHHHHHHHHHCHTHSHHHHHCTSSESEEEEEECCCHHHH CS
  Phosphodiest   93 epiwdtaakarglkaaalfwpgsevdystyyylvsetppryleddfnakvpledkvdkavlqtwldaafakvvlekelekpdlllvyleetDtvg 187 
                    ep+w+ta+k+ g+++a+++wpgse++++        + p+yl d++n ++ l +kvd+ +l ++ld++  +++ +++  +p+++++y++++D+ g
    KKY17339.1 1297 EPLWVTAEKQ-GIRTAIHMWPGSEAHIP-------PIEPTYL-DKYNGSEALSRKVDR-AL-SLLDLPGDADSSDESDHRPQFIAFYVPNVDADG 1380
                    **********.*****************.......9******.99************8.66.6******887777777***************** PP

                    HHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---EEEHTTSEEEGGGTSTGGHGEEEEECBHHS.SSEEEEEESTEEE.CCC CS
  Phosphodiest  188 HkfGpdspevedalrrvDkaigdLlealderglsaetniilvSDHGmadvsddkvielndlleekgllhlkdegkggakaliainpkarelnrva 282 
                    H +Gp+s e++ +++rvD++++dL+++l +r+l++ +n+i+vSDHGma++s+d++i+l+dl++   l +++d++     +l ++++k      ++
    KKY17339.1 1381 HLYGPNSTEIRSTISRVDSMLADLFQGLVDRNLTDVVNVIVVSDHGMATTSNDRLIQLDDLIDLD-LVDHIDGW-----PLRGLRLK------NP 1463
                    ***************************************************************99.9*******.....********......99 PP

                    TTHHHHHHHHHHTCHHCCHSTHTTTEEEEEGGGS-GGGCH..STTS-SEEEEE-TTEEEESSTTCS.........SBS-SEE--SS CS
  Phosphodiest  283 eaeaeevyaelkakleelrkkegealavylkeaipkrlhy..kkrapdlvlvadpgwsitskdkpd.........eyeikgthGyd 357 
                    +++ ++ y++l+a  +       ++++vy+++ +p+r+h+  ++r+ +l++v++ gw +++    d          y++kg hGyd
    KKY17339.1 1464 DRDLQQMYEDLRAQSAR-----SDNFEVYTRQTMPERYHFtnNDRIAPLWVVPKTGWAVVERVDFDvaqaktdglVYKPKGLHGYD 1544
                    **************333.....57****************988********************999********999*******98 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.2   0.0   2.1e-50   4.2e-47       2     192 ..     132     451 ..     131     453 .. 0.78
   2 ?   -2.9   0.0       2.1   4.3e+03      69      86 ..    1344    1361 ..    1336    1377 .. 0.85

  Alignments for each domain:
  == domain 1  score: 160.2 bits;  conditional E-value: 2.1e-50
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH......HHHSTHCHSHHHHHHTSCSSCEEEEEE...TTCSSEEEEEEEESSSGGGHHHHHHHH CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgeka......eeervlDtlkeErergiTiksaaisle...ketkkylinliDtPGHvdFskevirgl 91 
                 +irni+++gh++hGKt ++d L+++t++i+++ ek+      e+ r++Dt+  Erergi+ik++ +sl    +++k++ +n++DtPGHv+F++ev ++l
  KKY17339.1 132 QIRNIAFAGHLHHGKTAFMDMLVMQTHNIQDRLEKRqgrkrdEQLRYTDTHFLERERGISIKASPMSLVlqsTKGKSHVFNIMDTPGHVNFVDEVAASL 230
                 79****************************99888865555333555**********************97669************************* PP

                 HT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT...........TTEEEEEEBTTTTB CS
    GTP_EFTU  92 rvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekge...........kevpvvfgSalkge 179
                 r +Dg+vl+vd+veGv+ +te++++ a  e++p+ ++iNKmDrl+ elk  +++++ kl+++ e+++ + e++            ++ +v+f+++  g+
  KKY17339.1 231 RLVDGVVLIVDVVEGVQINTEQIIKYAVLEDLPLTLVINKMDRLILELKLPPNDAYFKLKHVVEEVNTVIENALpgqgekrrvspEKGNVAFACSDMGW 329
                 ********************************************9999999999999998886666666555546667777788888899999999999 PP

                 THH................................................................................................ CS
    GTP_EFTU 180 gvk................................................................................................ 182
                 +++                                                                                                
  KKY17339.1 330 CFTlqsfakmyadtypkldayefgsrlwgdifynpksrkfsrkgleerskrsfvnfvlepiyklyshtisespedlkdtletlgiqlkpsqyktdaqvl 428
                 888776666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 PP

                 .............HHHHHHHHHS CS
    GTP_EFTU 183 .............tllealvell 192
                               +++++v+++
  KKY17339.1 429 lklvceqffgppdGFVDMVVRHV 451
                 66666666666555666666655 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.1
                  SEEEEEEEESSSGGGHHH CS
    GTP_EFTU   69 kylinliDtPGHvdFske 86  
                  ++ ++l+D PG++d s+e
  KKY17339.1 1344 DRALSLLDLPGDADSSDE 1361
                  68899*******997766 PP

>> EFTUD2  116 kDa U5 small nuclear ribonucleoprotein component N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.0  10.8   2.5e-39     5e-36       1     122 []       2     114 ..       2     114 .. 0.79

  Alignments for each domain:
  == domain 1  score: 124.0 bits;  conditional E-value: 2.5e-39
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX............XXXXXXXXXXXXXX----TTT---S--TTTTT-SSSEEEE--S-SS CS
      EFTUD2   1 ddlYDEFGNyiGpelesdeeeeseeeeeeeeeeeeeeeeeeeaekaeedeelkdeeeeeeaeeeesnavvlhedkkyypsaeevYGkdvetlvqeeDaq 99 
                 ddlYDEFGN+iG+  es+eee ++ ++  +   +ee+e++    ++ +d++l++ ++e      +snavvlhedk+yyp+a++vYG+dvet vqeeDaq
  KKY17339.1   2 DDLYDEFGNFIGEAPESEEEEIQDGDAGPSYVYDEESEAA----SEVNDQQLMEVDDEG-----PSNAVVLHEDKQYYPTAQQVYGEDVETTVQEEDAQ 91 
                 69**********9998887744444444333333333322....345566566665543.....79********************************* PP

                 -TTS-SS--------B---SS-- CS
      EFTUD2 100 plsePiiaPvkekkfeveekdlp 122
                 pls+Pi+aPv++kkf+++e+dlp
  KKY17339.1  92 PLSQPIVAPVEQKKFSMQEADLP 114
                 ********************997 PP

>> EFG_IV  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0     4e-26     8e-23       4     121 .]     721     839 ..     718     839 .. 0.93

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 4e-26
                 ESCEE.SS-CCHCCCCCCCHTSSSHCCCCCEEEECCTTTTSSEEEEE--S....TCCCHCCCCHHHHCCCCCCTTS-TTTS--EESEEEEEEEEE--T. CS
      EFG_IV   4 ayrEtirkpvkereeklkkqsggdgqyakvileiePleegsgnefvdetk....ggqvpkeyieavekGfqealkeGplagepvtdvkvtLldgslhe. 97 
                 ++    ++pv ++ +++ +++++d+ +++ i++++P+e  + n++ d+t     ++++++ ++e +++Gfq+ ++eGpl++ep+++ k++L+d+sl   
  KKY17339.1 721 KI----KDPVRKVGQFFEEKYEWDKLASRSIWAFGPEE-MGPNILLDDTLpsqvDKKMLRTVQEGIKQGFQWGTREGPLCEEPIRNTKFRLTDISLAPe 814
                 44....599999************************86.9999999999877778999999************************************99 PP

                 .TTC-HHHHHHHHCHHHHHHHHCC- CS
      EFG_IV  98 .vdsseaafkpaarralkeallkAs 121
                  + +++++++p+arra+++++l+As
  KKY17339.1 815 aIFRGGGQIIPTARRAVYSSFLMAS 839
                 9********************9985 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   9.3e-22   1.9e-18       1      88 [.     841     929 ..     841     930 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 9.3e-22
                 EEEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE..TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHHHHH CS
       EFG_C   1 vllEPivkveievpeeyvgkvisdlssrrGeiedmeqd.asgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdklde 88 
                 +l+EP+++v ++ p + v+  ++ ls+rrG++++  ++ ++    +++ iP+ +++gf+t+Lr  T+G++++s+ f++++ vpgd+ld+
  KKY17339.1 841 RLMEPLYSVSMTGPADSVASLYNVLSRRRGHVLSDGPIaGTPLYSVRGLIPVIDSFGFETDLRIHTQGQATVSLVFDKWSVVPGDPLDR 929
                 59************************************8899*******************************************9986 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0     9e-11   1.8e-07       4      73 ..     505     578 ..     503     579 .. 0.98

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 9e-11
                  EEEEEEESEEETTEEEEEEC.TCTTSEE...EEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   4 algrvysGtlkkGdevrilg.ndtskke...ivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  algr++sGt ++G++vr+lg  +t  +e    + +i  ++    ++ ++  g++aG++v++ g++++i++++tl
   KKY17339.1 505 ALGRIMSGTAQPGQQVRVLGeGYTIDDEedmAQATINETWLACTRYNIPTSGVPAGNWVLLSGVDNSIVKTATL 578
                  79***********************************************************************9 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   7.1e-10   1.4e-06       1      67 [.     598     663 ..     598     671 .. 0.91
   2 ?   -0.0   0.0      0.49   9.7e+02       5      32 ..     687     714 ..     684     716 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 7.1e-10
      EFG_II   1 fPePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkrey 67 
                 f e+v+++a+ep + ++  k+ + L+++ +  p +++++ ee++e i+ G Gel ++ v+  l++ y
  KKY17339.1 598 FTESVFKVAVEPINPSELPKMLEGLRKINKSYPLITTKV-EESGEHIILGTGELYMDCVLHDLRKLY 663
                 6799*****************************998877.79*******************999866 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.49
      EFG_II   5 vislaiepkskadedklskaLarlleED 32 
                 ++ +ai+p++k++ + +++ L+  ++ED
  KKY17339.1 687 IMCYAITPNKKNKITMIAEPLDDGIAED 714
                 6779*****************9999999 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   3.8e-07   0.00076       1     114 []     135     270 ..     135     270 .. 0.75
   2 ?   -2.1   0.0       1.9   3.9e+03      46      84 ..    1345    1386 ..    1334    1420 .. 0.57

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.8e-07
                 EEEEEESTTSSHHHHHHHHHTS....TEEESSSTTSSSSEEEEEEEETTEE............................EEEEECGGCSSHHHHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge....kaivsdkpgtTrdinegrvklkgke............................ielvDtpGliegaseekglg 67 
                 ++a++G+   GK+ ++  l+ +    + + ++++g  rd + +  ++   +                            ++++DtpG ++       + 
  KKY17339.1 135 NIAFAGHLHHGKTAFMDMLVMQthniQDRLEKRQGRKRDEQLRYTDT---HflerergisikaspmslvlqstkgkshvFNIMDTPGHVN-------FV 223
                 5899***************9763333446667777777776665552...12233455666666777777777777788********555.......77 PP

                 HHHHHHHC.TSEEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  68 kaflalee.adlillvvdaseeklkpldeeleelleeakkplilvlnk 114
                 ++++a  + +d ++l+vd+  e+++ + e++ ++   ++ pl+lv+nk
  KKY17339.1 224 DEVAASLRlVDGVVLIVDVV-EGVQINTEQIIKYAVLEDLPLTLVINK 270
                 7777777768********88.7799999999999877999******98 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.9
                  EEEEEEECGGCSS..HHHHHH.HHHHHHHHHHCTSEEEEEEE CS
    MMR_HSR1   46 keielvDtpGlie..gaseek.glgkaflaleeadlillvvd 84  
                  + + l+D+pG  +  ++s+++ ++   +  + +ad  l+  +
  KKY17339.1 1345 RALSLLDLPGDADssDESDHRpQFIAFYVPNVDADGHLYGPN 1386
                  678999***932221222222333333333555555555554 PP

>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0022       4.3       2      72 ..    1205    1271 ..    1204    1320 .. 0.73
   2 !    9.7   0.0   0.00025       0.5     183     253 ..    1321    1429 ..    1314    1457 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0022
                  EEEEEEESSE-TTGSGGGTTTSCSSHHHHHHHHTSEE..ESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCS CS
   Sulfatase    2 nvvliladdlgagdlglyggktattpnldrlaeeglr..ftnfysaaplcspsraalltgryphnsgvasnte 72  
                  + ++i +d ++a+ l      +  tp+l +l  eg+   + n     +++ p  ++l tg+yp+++gv+ nt 
  KKY17339.1 1205 TTIYISLDGFRADFL-----NRDLTPTLNKLISEGVSprYMNPSFP-SVTFPNHFTLVTGLYPESHGVVGNTF 1271
                  667777777766542.....23459999999999985223333334.49*******************99984 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00025
                  SSSTCTCGGHTCCGSTTTTCCCCCCH.......................................HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGG CS
   Sulfatase  183 Happeapdeyakkyatffddgseaar.......................................qlleaylnsveyvDdligrvlaaLeenglldn 240 
                  H  p+ ++ y +ky++++    + +r                                        + ++   ++++vD +++++++ L + +l d 
  KKY17339.1 1321 HI-PPIEPTYLDKYNGSEALSRKVDRalslldlpgdadssdesdhrpqfiafyvpnvdadghlygPNSTEIRSTISRVDSMLADLFQGLVDRNLTDV 1416
                  63.56667777777666655555555666777777777777777777777777777777777777777788889*********************** PP

                  EEEEEEESSSSCC CS
   Sulfatase  241 tlvvftSDhgasl 253 
                  + v+++SDhg ++
  KKY17339.1 1417 VNVIVVSDHGMAT 1429
                  **********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1722 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:00.54
# Mc/sec: 9514.40
//
Query:       KKY17340.1  [L=403]
Description: putative acetylacetyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-95  317.4   0.2    2.2e-94  315.7   0.0    1.8  2  Thiolase_N     Thiolase, N-terminal domain
    1.5e-45  153.8   2.9      5e-45  152.1   0.8    2.4  2  Thiolase_C     Thiolase, C-terminal domain
    0.00096   19.0   2.3      0.021   14.6   0.1    2.8  3  ACP_syn_III    3-Oxoacyl-[acyl-carrier-protein (ACP)] synthas
      0.003   17.2   3.3      0.009   15.6   1.1    2.5  3  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.7   0.0   4.8e-98   2.2e-94       1     260 []      12     272 ..      12     272 .. 0.98
   2 ?   -0.8   0.0      0.17   7.8e+02      29      48 ..     304     323 ..     301     349 .. 0.84

  Alignments for each domain:
  == domain 1  score: 315.7 bits;  conditional E-value: 4.8e-98
                 EEEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsi 99 
                 v++vsaartpig f gsl++lsa++L+++a+k+++++ag+++++v+evi+Gnvl+a+ gqn+arq al ag+ +e++++tvnkvc+Sglka++ +aq i
  KKY17340.1  12 VYVVSAARTPIGAFLGSLSSLSATQLGSHAIKGAVSRAGIKADDVEEVIFGNVLSANLGQNPARQCALGAGLNKETICTTVNKVCASGLKAMIIGAQTI 110
                 89************************************************************************************************* PP

                 HTTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTTTBE CS
  Thiolase_N 100 aageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkdeiv 198
                 ++g+ d++v+gG+Esmsn p++ + ++r+g+k+g+++++d +++dgl+d +n+ehmGl++e++a +y++ Re+qd +A++s++ka++a k+g F+ eiv
  KKY17340.1 111 MTGNGDCIVVGGTESMSNCPHYLP-NLRTGAKFGNQTLVDGMLKDGLTDSYNNEHMGLAGEKCAGDYEFGREAQDDYAIRSYTKAQEASKSGGFDFEIV 208
                 ***********************9.************************************************************************** PP

                 -EEEEESSSE..EEE-S-TTS-TT--HHHHHTS-BSSSTT.SS-BTTSB--BEEEEEEEEEEEHH CS
  Thiolase_N 199 Pvkvkgkkgk..ktvdkdeairsevtaekLaklkpaFkke.GtvtAgnasqisDGaaavllmses 260
                 Pv+++g +gk   t+++d+++++ ++a+kL+++kpaFk + GtvtA na +++DGaaa++l+se+
  KKY17340.1 209 PVELPGVRGKpgVTISQDDEPKN-LNADKLRAVKPAFKPKdGTVTAPNAAPLNDGAAALVLVSED 272
                 **********8669999999987.**************999*********************996 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.17
                 HHHHHHHHHHTS-GGGCCEE CS
  Thiolase_N  29 ealkallekagvdpeevdev 48 
                  a+ ++l++ag+++e+vd  
  KKY17340.1 304 LAIPKALKHAGIKQEDVDAF 323
                 57889999******999975 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.08   3.6e+02      26      45 ..      40      59 ..      31      72 .. 0.85
   2 !  152.1   0.8   1.1e-48     5e-45       1     122 [.     279     400 ..     279     401 .. 0.99

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.08
                HHHHHHHHHHT--GGGESEE CS
  Thiolase_C 26 yaikkvlkkagltvedidlf 45
                 aik ++++ag++ +d++ +
  KKY17340.1 40 HAIKGAVSRAGIKADDVEEV 59
                799*************9855 PP

  == domain 2  score: 152.1 bits;  conditional E-value: 1.1e-48
                 ---SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--GGGBSTT--HHHH-B-TTTHHHHHHHHHHHHHHH CS
  Thiolase_C   1 lkplakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldlekvNvnGGaialGHPlGasGaRivvtllselkk 99 
                 lkp+aki  +  +  +pe+++++Pa ai+k+lk+ag++ ed+d+fEinEAF+++aLa++k l+l ++kvN++GGa+a+GHPlGasGaRiv+tll  lk+
  KKY17340.1 279 LKPIAKILGWGDAERNPEDFTVAPALAIPKALKHAGIKQEDVDAFEINEAFSVVALANMKILGLSEDKVNLHGGAVAIGHPLGASGARIVTTLLGVLKE 377
                 589************************************************************************************************ PP

                 CTTSEEEEEEEETTTEEEEEEEE CS
  Thiolase_C 100 eggklgvaalCigggqgvalvie 122
                 ++gk+g + +C+ggg ++alv+e
  KKY17340.1 378 KKGKIGCVGICNGGGGASALVLE 400
                 *********************98 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   4.8e-06     0.021       3      43 ..      92     132 ..      91     144 .. 0.89
   2 ?    2.9   0.0     0.022        99      52      65 ..     259     272 ..     252     281 .. 0.79
   3 ?   -2.4   0.2      0.96   4.3e+03      53      62 ..     391     400 ..     386     401 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.8e-06
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGCS-T CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetlskilDw 43 
                  +n++C++ + a+ + ++ i +g+  +++v g+e +s++ ++
   KKY17340.1  92 VNKVCASGLKAMIIGAQTIMTGNGDCIVVGGTESMSNCPHY 132
                  789*********************************98665 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.022
                  B-EEEEEEEEEEES CS
  ACP_syn_III  52 fGDGAgAvvlease 65 
                  + DGA+A+vl  ++
   KKY17340.1 259 LNDGAAALVLVSED 272
                  57*******98864 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.96
                  -EEEEEEEEE CS
  ACP_syn_III  53 GDGAgAvvle 62 
                  G GA A+vle
   KKY17340.1 391 GGGASALVLE 400
                  7799999998 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.21   9.4e+02      89     126 ..      35      72 ..      33      91 .. 0.80
   2 !   15.6   1.1     2e-06     0.009     170     206 ..      91     127 ..      83     133 .. 0.90
   3 ?   -1.2   0.0      0.27   1.2e+03      98     114 ..     308     324 ..     303     367 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.21
                    HHHHHHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHH CS
  ketoacyl-synt  89 qrllleaawealedagltpeeldgsrvgvfiGvgagdy 126
                    ++l   a + a+ +ag++++++++  +g+++ ++ g++
     KKY17340.1  35 TQLGSHAIKGAVSRAGIKADDVEEVIFGNVLSANLGQN 72 
                    577778899999*********99999999999988876 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 2e-06
                    EEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE--- CS
  ketoacyl-synt 170 tvdtACsSslvavhaavqslrsgeadvalaGGvelll 206
                    tv   C+S+l+a+    q +++g+ d++++GG+e + 
     KKY17340.1  91 TVNKVCASGLKAMIIGAQTIMTGNGDCIVVGGTESMS 127
                    77779*****************************886 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.27
                    HHHHHHTS-HHTCTTGG CS
  ketoacyl-synt  98 ealedagltpeeldgsr 114
                    +al++ag+++e++d  +
     KKY17340.1 308 KALKHAGIKQEDVDAFE 324
                    79999999999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2974.99
//
Query:       KKY17341.1  [L=209]
Description: putative cytoplasmic protein required for cell [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-09   36.0   0.0      2e-08   34.3   0.0    1.9  1  FeS_assembly_P  Iron-sulfur cluster assembly protein


Domain annotation for each model (and alignments):
>> FeS_assembly_P  Iron-sulfur cluster assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   1.1e-12     2e-08       2      73 ..      82     166 ..      81     167 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.1e-12
                     HHHHHHHTT-B-TTTSSBCCCCT---E..EEE-T..........-EEEEEE--SSTT-TTHHHHHHHHHHHHC..STT--EEEEE CS
  FeS_assembly_P   2 eavlaaLrtVtDPelgvdlvslglvre..idieg..........gkVsvditltypacslaeairadaeaalr.alpgvevveVe 73 
                     +++++ ++t+ DPe++++l sl +v    i+i+            +V+v it+t+ +csla+ i   ++  l+ +lp++  v V+
      KKY17341.1  82 QEIYDLISTISDPEHPLSLGSLAVVNLpdISIKPilpnrpsstlQTVTVLITPTITHCSLATVIGLGVRVRLEqSLPPRYRVDVK 166
                     89**********************985559999999999***************************************8777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1557.23
//
Query:       KKY17342.1  [L=634]
Description: putative phospholipase c [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-62  209.3   0.0    2.6e-62  208.7   0.0    1.3  1  PI-PLC-X  Phosphatidylinositol-specific phospholipase C, X do
    5.7e-42  142.7   0.0    9.7e-42  142.0   0.0    1.4  1  PI-PLC-Y  Phosphatidylinositol-specific phospholipase C, Y do


Domain annotation for each model (and alignments):
>> PI-PLC-X  Phosphatidylinositol-specific phospholipase C, X domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.7   0.0   2.9e-66   2.6e-62       1     145 []     101     315 ..     101     315 .. 0.99

  Alignments for each domain:
  == domain 1  score: 208.7 bits;  conditional E-value: 2.9e-66
                 SEEEEETTTTTTS-SHHHHHTHHHH---SS-HHHHHHTT--EEEEEE-...TT.............................................. CS
    PI-PLC-X   1 lsaPlshyfissshntyltgnqlssessveayrnaLlrGcRcvEidvwdgedee............................................. 54 
                 ls+Pls+yfis+shntyltgnql+s+ss++ay+n+LlrGcRc+Eidvwdged++                                             
  KKY17342.1 101 LSYPLSNYFISTSHNTYLTGNQLYSDSSADAYKNVLLRGCRCLEIDVWDGEDNSssseseddddenqgrrskamgkleaglqkvklrnrsrskspsrka 199
                 689**************************************************99******************************************** PP

                 ..........................SEEEETTEEE.EEEHHHHHHHHHHHHHHSTT--EEEEEEETTT-THHHHHHHHHHHHGGGGB-EEETT-.--- CS
    PI-PLC-X  55 ..........................pvvlhgytltkkikfrdvleaikdyafktselPvivsLevhcsaeqqekmaeilkeifgdlLleeplekeesk 127
                                           p+vlhgytlt++++frdv+ aikd+af  ++lP+i sLe h+  eqqe m++i++e+++d+L+e p+++ e  
  KKY17342.1 200 eqrsinveqdqltpkaagqlpvkrvePRVLHGYTLTREVPFRDVCTAIKDSAFMVTDLPIIASLEIHAGLEQQEIMVDIMQEAWKDMLVELPEDE-EIA 297
                 ********************************************************************************************995.9** PP

                 ---BCCCCTT-EEEEE.. CS
    PI-PLC-X 128 elpspeelkgKilikvkk 145
                  lp+p +l++Kilikvk+
  KKY17342.1 298 VLPNPGSLRNKILIKVKW 315
                 ****************96 PP

>> PI-PLC-Y  Phosphatidylinositol-specific phospholipase C, Y domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.0   0.0   1.1e-45   9.7e-42       1     114 [.     362     472 ..     362     473 .. 0.96

  Alignments for each domain:
  == domain 1  score: 142.0 bits;  conditional E-value: 1.1e-45
    PI-PLC-Y   1 lsdlvvytqsvkfksfekpeakkpnhvfslsesklkkllekeeekklvkhnrrhlmRvyPkgtrvdssNlnpvefWnvGvqmvAlnwqtldegmqlnea 99 
                 ls+l+vyt+++kfk+f++pe+k p hv+slse+k++++ +++ + +l++hnr++lmR++P+g+r++ssNl+p  +W++Gvqm+Alnwq+ld+gm+lnea
  KKY17342.1 362 LSQLGVYTRAYKFKHFDEPESKIPVHVYSLSEKKIQDVNDEHGS-ALFEHNRNYLMRAFPSGMRITSSNLDPSILWRHGVQMAALNWQRLDKGMMLNEA 459
                 799**********************************9844444.6***************************************************** PP

    PI-PLC-Y 100 lFaengscGYvlKPe 114
                 +Fa  g++G+vlKP+
  KKY17342.1 460 MFA--GTDGWVLKPA 472
                 ***..*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.50
# Mc/sec: 3824.26
//
Query:       KKY17343.1  [L=242]
Description: putative ubiquitin-conjugating enzyme e2c-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-56  190.2   0.0    5.8e-56  190.0   0.0    1.0  1  HECT_2    HECT-like Ubiquitin-conjugating enzyme (E2)-binding
  ------ inclusion threshold ------
      0.042   14.2   0.2      0.078   13.3   0.2    1.5  1  DUF1651   Protein of unknown function (DUF1651)


Domain annotation for each model (and alignments):
>> HECT_2  HECT-like Ubiquitin-conjugating enzyme (E2)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.0   0.0   6.5e-60   5.8e-56       1     202 [.       9     202 ..       9     232 .. 0.91

  Alignments for each domain:
  == domain 1  score: 190.0 bits;  conditional E-value: 6.5e-60
      HECT_2   1 Ellpnirqislfvslpsplaesrksvkvslsedgilivlshe.esetlkLParvsesssrsnlelpedaskelsfrlpldeeessegskdeeslesses 98 
                 E+l+ni+qi+l++s++++    ++ ++v++s+d++ i+++h+ ++++l LP  vs +   +++++p +++k +s+rl l++++  + ++++        
  KKY17343.1   9 EVLQNIGQITLYASFQTDK---NEGTTVDISSDRRFISVTHDgTTAQLLLPLAVSGT---AQVTIPAERAKDVSLRLALEDTNAVTTRFEDLG------ 95 
                 99*****************...899*******************************9...778999999***********9888887777765...... PP

      HECT_2  99 ekevpWsakdlsaetslrCrsCknvllksrkikrwkdLPSenwaemmdfWhCHkpdehed....sedenaatkgygasnklspqegdglvdltsfllae 193
                  +e pWsa++ +++ +lrC +C+ ++ +s+ i +wkdLPSenwaemmdfWhCH+p+++++    +e+e+a++kgyga+n++++++g+ +vd++sfll++
  KKY17343.1  96 -SEEPWSAAKFTPSGRLRCLNCERPVTRSDAIFTWKDLPSENWAEMMDFWHCHRPHDEDKpstgNENEAAQAKGYGAANRVRATKGTAFVDVSSFLLSK 193
                 .378****************************************************88889**9*********************************** PP

      HECT_2 194 sdcqglkls 202
                 +dc +lk+s
  KKY17343.1 194 EDCIDLKVS 202
                 ******998 PP

>> DUF1651  Protein of unknown function (DUF1651)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   8.7e-06     0.078      44      70 ..     114     140 ..     100     144 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.7e-06
     DUF1651  44 lktrrrltlekArelWkellstGWekv 70 
                 l  +r +t+ +A+ +Wk+l s++W ++
  KKY17343.1 114 LNCERPVTRSDAIFTWKDLPSENWAEM 140
                 5667899*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 1486.67
//
Query:       KKY17344.1  [L=343]
Description: putative citrate lyase beta [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-35  120.4   0.0      9e-35  119.8   0.0    1.2  1  HpcH_HpaI       HpcH/HpaI aldolase/citrate lyase family
    1.3e-07   31.1   0.0    4.6e-05   22.7   0.0    2.1  2  C-C_Bond_Lyase  C-C_Bond_Lyase of the TIM-Barrel fold


Domain annotation for each model (and alignments):
>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.8   0.0     1e-38     9e-35       6     221 .]      28     258 ..      26     258 .. 0.89

  Alignments for each domain:
  == domain 1  score: 119.8 bits;  conditional E-value: 1e-38
                 EESTSHHHHHHHCTC--SEEEEESSTSSSHHHHHHHHHHHHHHHHHHHHCTTTSSEEEEE-SSTTHHHHHHHGG.HHH.TTSSEEEESS--SHHHHHHH CS
   HpcH_HpaI   6 lpganaalaekaaiagaDsvliDlEdavalaeKdaARvlvsealkqldalaaaasevvVRvnsldselikqdle.vld.lgaqvvlvPkvetaeealev 102
                 +pg++++ +ek     aD v  DlEd+v+ a+K  AR+lv++ l+++    ++  e  VR+ns+ s+l+  dl+ vl+   +++v+vPkve+a +++ +
  KKY17344.1  28 VPGSSQRFLEKSRRLTADCVAYDLEDSVTPANKPVARQLVRKELDTPLP--SIIRERAVRINSVGSGLALSDLTeVLKsPNLTTVVVPKVESASDLTFI 124
                 79*******************************************9977..5668*******************96652689***************** PP

                 HHHTSHTTTS---.....HCCC-EEEEEE-SHHHHHTHHHHH.TSTTEEEEEE-HHHHHHHTT-TTSTTSHHHHHHHHHHHHTTHCEEE.EEEE.E-SS CS
   HpcH_HpaI 103 vsalrepekgirg.....anketrllaqiEsaegvknaeeIa.avegldgvflGaeDlsadlgtkrspegtevldareriltaaraagi.aaldtvasd 194
                   ++ ++           +   ++++a iEsa+ v  +++I  +++ l g++++aeD+s dl  +r+p+ te l+ar++i+ta+raa++ + +d+v + 
  KKY17344.1 125 TDVIHQHRYANPPqspnsSPSAIQIIALIESAKSVISLPQITtSTPLLSGLIFAAEDFSLDLSITRTPSLTEFLYARSAIVTASRAANLpSTIDLVCTT 223
                 ***999886665567777999*********************99999*****************************************95689**9988 PP

                 HHHHH........HHHHTTHCEEEEEEHHHHHHHH CS
   HpcH_HpaI 195 iddae........gflaegalfvalGfdgkllinp 221
                  d+++        ++  e+  +  lGf+gk++i+p
  KKY17344.1 224 LDKNKssssqeptTLETESLSGLHLGFNGKQVIHP 258
                 7765411111111566677888999********98 PP

>> C-C_Bond_Lyase  C-C_Bond_Lyase of the TIM-Barrel fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0   0.00048       4.3      30     121 ..      42     127 ..      27     168 .. 0.72
   2 !   22.7   0.0   5.1e-09   4.6e-05     245     314 ..     230     303 ..     200     321 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00048
  C-C_Bond_Lyase  30 egltslvlclEDavseeeveaAeenlkellkelaeaekekekeelpllFvRvRspeq...lkellerlgealelltGfvlPkftsesleeyleal 121
                      ++  +  +lED+v+ ++ + A + +++ l++   +             vR+ s+     l++l+e l  +   lt +v+Pk++s+s  ++++ +
      KKY17344.1  42 LTADCVAYDLEDSVTPANKPVARQLVRKELDTPLPSII-------RERAVRINSVGSglaLSDLTEVL--KSPNLTTVVVPKVESASDLTFITDV 127
                     45567889**********************99776433.......33445666655500055555555..88999999****9998876665544 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 5.1e-09
  C-C_Bond_Lyase 245 llekdldglirEvalDkanGlvGKtvIhPsqialvqallvVskeeyedAldilesakg....gvfkseyankmn 314
                       +++  +l  E       G+ GK vIhPsq++ vq++++ s +e e A +i  +++     g  +    +km+
      KKY17344.1 230 SSSQEPTTLETESLSGLHLGFNGKQVIHPSQLSTVQRIFSPSPDEIEWAIRIEIAQAKaekmGKGAWALDGKMI 303
                     44677789999*9************************************9985442211123444444456665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 2152.94
//
Query:       KKY17345.1  [L=994]
Description: putative set and ww domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-20   71.3  11.4    5.7e-20   71.3  11.4    2.5  2  SRI       SRI (Set2 Rpb1 interacting) domain
    2.6e-17   63.7   0.1    2.6e-17   63.7   0.1    3.7  3  SET       SET domain
    4.3e-10   39.5   9.7    4.3e-10   39.5   9.7    1.9  2  AWS       AWS domain
    0.00018   21.5   0.2    0.00018   21.5   0.2    2.5  4  Med26     TFIIS helical bundle-like domain
     0.0013   18.8   2.0     0.0035   17.4   2.0    1.8  1  WW        WW domain
  ------ inclusion threshold ------
       0.23   11.8   1.2        1.3    9.4   0.0    2.7  3  CENP-X    CENP-S associating Centromere protein X


Domain annotation for each model (and alignments):
>> SRI  SRI (Set2 Rpb1 interacting) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.5       0.4   1.2e+03      41      68 ..     661     695 ..     654     699 .. 0.51
   2 !   71.3  11.4   1.9e-23   5.7e-20       1      83 [.     700     781 ..     700     783 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.4
         SRI  41 kklvekElkkdk...srdppkel.......seekkkki 68 
                 +++++kE k+++   +   p+++       +e k++k 
  KKY17345.1 661 NIVTAKE-KEREakvN--TPDTPnpaakekKERKEEKW 695
                 7899999.77774442..22222112211244444444 PP

  == domain 2  score: 71.3 bits;  conditional E-value: 1.9e-23
         SRI   1 ekkqekkfkkelakvVvnvlnkYrkklkkedfKklakeltkklvekElkkdksrdppkelseekkkkikefvkeYmekfgaky 83 
                 e+k++k ++++l++++ +v+++Y++kl++ed+K++ake++kklv++++k  + +dp+k +s +++kk+k+++ke+++k++ak+
  KKY17345.1 700 EEKKKKLYENTLFPHISYVVSRYKSKLPREDLKRFAKEIAKKLVNSDFKSGRVEDPTK-ISAKHEKKVKKYCKEFFDKAVAKH 781
                 589***********************************************66446666.*********************996 PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.71   2.1e+03     104     144 ..     131     167 ..      73     189 .. 0.63
   2 !   63.7   0.1   8.7e-21   2.6e-17       1     169 []     221     327 ..     221     327 .. 0.90
   3 ?   -6.0   6.3         6   1.8e+04      51      51 ..     740     740 ..     638     864 .. 0.52

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.71
                 HCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 104 saiagysidaralksgngagplarflNHsCdpNcnltvqnv 144
                 +a +++++ +++++s  +      +  H  +++c++++++ 
  KKY17345.1 131 EAKSTFTVMEACTYSNKWL----GYTEHAMECDCAEEWDSI 167
                 3344455556777777777....777777777777777665 PP

  == domain 2  score: 63.7 bits;  conditional E-value: 8.7e-21
                 SCEEEESSXBXTTXEEEEEE.ECCEECHHHHHHHHHH........HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHX CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeyp.eeiiltkdeadksele........aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskae 90 
                 G+G++A+ d+++++fi+ey  e  ++++ + ++++l+         y++sl+                                               
  KKY17345.1 221 GYGLRANVDLQPHQFIFEYIgE--VINEPQFRRRMLQyddegikhFYFMSLS----------------------------------------------- 270
                 9*******************77..99999999999999******99999999............................................... PP

                 TTTSXXXHCCCCCHCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  91 sdlnaskpeagafsaiagysidaralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidYg 169
                                  g ++d  a+k gn      rf+NHsC+pN ++   +v +  r+++fA r+Ik+GeEl ++Y+
  KKY17345.1 271 ----------------KGEFVD--ATKRGNLG----RFCNHSCNPNSYVDKWVVGDKLRMGIFAERRIKAGEELVFNYN 327
                 ................455599..77*****9....***********5555555************************7 PP

  == domain 3  score: -6.0 bits;  conditional E-value: 6
                 S CS
                 x RF
         SET  51 f 51 
                 +
  KKY17345.1 740 K 740
                 0 PP

>> AWS  AWS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   9.7   1.4e-13   4.3e-10       3      39 .]     170     207 ..     168     207 .. 0.92
   2 ?   -5.0   1.8         6   1.8e+04       3      11 ..     336     345 ..     335     345 .. 0.71

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 1.4e-13
         AWS   3 epsgcgs..dCiNRmlliECteetCpcGerCqNqrfqrk 39 
                 ++++cg+  dCiNR++ +EC+   C cG  CqNqrfq++
  KKY17345.1 170 KNHACGDdsDCINRATKMECVG-DCGCGSACQNQRFQQR 207
                 689999888************8.7*************86 PP

  == domain 2  score: -5.0 bits;  conditional E-value: 6
         AWS   3 epsgcgs.dC 11 
                 +p+ cg+ +C
  KKY17345.1 336 QPCYCGEpNC 345
                 6777888777 PP

>> Med26  TFIIS helical bundle-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.7   1.1e+04      24      41 ..     427     445 ..     426     446 .. 0.63
   2 !   21.5   0.2   5.9e-08   0.00018       2      52 ..     472     521 ..     471     521 .. 0.87
   3 ?   -3.6   0.1       3.9   1.2e+04      39      46 ..     736     743 ..     719     744 .. 0.64
   4 ?   -4.2   0.1         6   1.8e+04      32      44 ..     761     772 ..     757     774 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.7
                 HHHHHHH..-TTS-HHHHHH CS
       Med26  24 vVnalrk..hkhetaevktl 41 
                 +V+ l++  h++ +++v+++
  KKY17345.1 427 AVKLLSRiqHCE-DEQVRNR 445
                 677777522555.8888876 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 5.9e-08
                 HHHHS---.....HHHHHHSHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHH CS
       Med26   2 iLaqLeklpi.ttetLkstgIGkvVnalrkhkhetaevktlAksLvekWkka 52 
                 iL+ L+ +p  t++++  ++I  ++ +   +k+e+++v++  ++L+++W+k+
  KKY17345.1 472 ILDILDSFPRlTRNKIIDSKIETTMQQF--TKSEDERVRETSNRLLDEWSKL 521
                 66666666666*****************..6688***************985 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 3.9
                 HHHHHHHH CS
       Med26  39 ktlAksLv 46 
                 k+ Ak+Lv
  KKY17345.1 736 KEIAKKLV 743
                 44566666 PP

  == domain 4  score: -4.2 bits;  conditional E-value: 6
                 TTS-HHHHHHHHH CS
       Med26  32 khetaevktlAks 44 
                 kh +++vk+ +k+
  KKY17345.1 761 KH-EKKVKKYCKE 772
                 45.8899988875 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   2.0   1.2e-06    0.0035       1      31 []     608     635 ..     608     635 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.2e-06
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 LP GW ++  +d G++YYy   Tg+tqW++P
  KKY17345.1 608 LPKGWFQA-NSD-GKTYYYS-ATGQTQWTRP 635
                 899**888.889.******6.79*******9 PP

>> CENP-X  CENP-S associating Centromere protein X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.1   3.4e+03      38      72 ..     380     419 ..     380     419 .. 0.66
   2 ?   -1.8   0.0       1.3   3.9e+03       4      33 ..     492     521 ..     491     541 .. 0.82
   3 ?    9.4   0.0   0.00043       1.3       3      56 ..     742     795 ..     738     827 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHTT-SE............EECHHHHHHCHCHH CS
      CENP-X  38 avaRaaeeaeeegkeeseksk.......levedLekiapqLl 72 
                 avaR   ++++++++e+           l+ +   k+++ L+
  KKY17345.1 380 AVARRPRKKKAGEDDEEY--VdslqpksLQADAVTKVMAALM 419
                 566666655555544433..1458899999999999998886 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
                 HHHHHCCC-SSTT-EE-CCCHHHHHHHHHH CS
      CENP-X   4 larlLqesfkdektkItkdalelvaeylkl 33 
                 +++ +q++ k+e+ ++ +  ++l+ e  kl
  KKY17345.1 492 IETTMQQFTKSEDERVRETSNRLLDEWSKL 521
                 567788888999999999999999887665 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00043
                 HHHHHHCCC-SSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SE... CS
      CENP-X   3 llarlLqesfkdektkItkdalelvaeylklFvrEavaRaaeeaeeegkeesek 56 
                 l+++ +++   ++ tkI+ +  + v++y k F   ava  ++++++++++ ++k
  KKY17345.1 742 LVNSDFKSGRVEDPTKISAKHEKKVKKYCKEFFDKAVAKHVAHQKKKADKAKGK 795
                 55555666445566*************************999777666555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (994 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1783  (0.0994478); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.52
# Mc/sec: 5748.15
//
Query:       KKY17346.1  [L=838]
Description: putative calcium calmodulin-dependent protein kinase kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-52  177.5   0.0    8.4e-45  153.2   0.0    2.3  2  Pkinase         Protein kinase domain
    9.8e-34  116.8   0.0    1.7e-31  109.4   0.0    2.2  2  Pkinase_Tyr     Protein tyrosine kinase
    1.7e-06   27.6   0.0    4.5e-05   22.9   0.0    2.2  2  Kinase-like     Kinase-like
     0.0018   18.2   0.8      0.003   17.5   0.0    1.8  2  APH             Phosphotransferase enzyme family
     0.0023   16.8   1.5      0.022   13.5   0.0    2.2  2  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.7e-08   9.6e-05       1      47 [.      70     115 ..      70     124 .. 0.89
   2 !  153.2   0.0   2.3e-48   8.4e-45      41     258 ..     152     365 ..     142     367 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.7e-08
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlr 47 
                 y +++++G+GsfG V  av +e+g+++AvK+++k++ +k+ ++++lr
  KKY17346.1  70 YIVKQEIGRGSFGAVHLAV-DENGEEYAVKEFSKSRLRKRAQSHILR 115
                 56799**************.6******************99998887 PP

  == domain 2  score: 153.2 bits;  conditional E-value: 2.3e-48
                 HHHHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHH..HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTT CS
     Pkinase  41 kekkvlrEikilkklkhpnivrlyevfee..kdelylvleyveggeladlle..rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekg 135
                 + + +++Ei+i+kkl+hpn+v l+ev+ +  +d+ly+vle++++g ++++    +   +see+++ +++ ++ g+eylH++gi+HrD+Kp+N L+ +++
  KKY17346.1 152 SINLIREEIAIMKKLNHPNLVSLIEVLDDpkEDSLYMVLEMCKKGVVMRVGLgeTADPYSEEQCRCWFRDLMLGIEYLHAQGILHRDIKPDNCLLTKDD 250
                 3367999*********************98899************9999876556667***************************************** PP

                 EEEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHH..TTSCB.SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...H CS
     Pkinase 136 elKitDFGlakelesssk..ltsfvgtseYlAPEvl..keney.skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklp 228
                 +lK++DFG+++ +e++s+  + +  g++ +l+PE+   ++ ++ +k++D+Ws+Gv+ly+l +g+ pf+           + +      + +  ++ + +
  KKY17346.1 251 VLKVVDFGVSEMFEKDSEmlTVKSAGSPAFLPPELCvvRHGGIsGKAADIWSMGVTLYCLRFGRIPFERG--------AILD------LYEaIKNDSPN 335
                 ******************8888899*********98888888889***********************22........2222......22212234556 PP

                 HHTTS-HHHHHHHHHHT-SSGCCSTTHHHH CS
     Pkinase 229 easeiseeakdllkkllkkdpkkRltaeel 258
                  +   ++ + d++ kll+kdp++R+ ++el
  KKY17346.1 336 LPAGHDDPFCDVMLKLLEKDPERRIKMKEL 365
                 6667799******************99986 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0031        11       3      50 ..      72     115 ..      70     125 .. 0.73
   2 !  109.4   0.0   4.8e-35   1.7e-31      45     256 ..     153     366 ..     143     369 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0031
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHHHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl.keeateeekeelle 50 
                  +++++G+G+fG V+ +  +     + ++ avK + k++ +++ ++++l+
   KKY17346.1  72 VKQEIGRGSFGAVHLAVDE-----NGEEYAVKEFsKSRLRKRAQSHILR 115
                  5799**********99888.....7888999998334444454555555 PP

  == domain 2  score: 109.4 bits;  conditional E-value: 4.8e-35
                  HHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTE.BHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEET CS
  Pkinase_Tyr  45 keelleeakimkklkhpnivkllgvct..keepllivteyvkgG.dLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsen 139
                   + + ee++imkkl+hpn+v+l+ v    ke++l++v+e++k+G  ++  L ++  ++ + ++  ++  ++  G+eyL+++ ++Hrd+   N+Ll+++
   KKY17346.1 153 INLIREEIAIMKKLNHPNLVSLIEVLDdpKEDSLYMVLEMCKKGvVMRVGLGET-ADPYSEEQCRCWFRDLMLGIEYLHAQGILHRDIKPDNCLLTKD 249
                  455677********************9888889***********4456668887.******************************************* PP

                  TEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE...EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHH CS
  Pkinase_Tyr 140 kvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk...ftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeel 234
                  +v k+ DfG+++  ekd+e+ + ++a  +  +++pE    ++     +++D+Ws Gv+l+ +  +g+ p+++    +++e++k++   + p+   + +
   KKY17346.1 250 DVLKVVDFGVSEMFEKDSEMLTVKSA-GSPAFLPPELCVVRHggiSGKAADIWSMGVTLYCLR-FGRIPFERGAILDLYEAIKNDS-PNLPAGHDDPF 344
                  **************877777666555.55579****87655555466889**********775.5*****************8765.56788899*** PP

                  HHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 235 yelmkkcweedpeeRptfselv 256
                   ++m k +e+dpe+R +++el+
   KKY17346.1 345 CDVMLKLLEKDPERRIKMKELR 366
                  *******************996 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.027        97      11      48 ..      67     103 ..      61     119 .. 0.84
   2 !   22.9   0.0   1.3e-08   4.5e-05     158     251 ..     227     318 ..     219     327 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.027
  Kinase-like  11 ertlvrgellkkgdrsvvfevkdqetgeplavkvfllp 48 
                    ++++++ +++g +++v ++ d++ ge+ avk f+  
   KKY17346.1  67 INQYIVKQEIGRGSFGAVHLAVDEN-GEEYAVKEFSKS 103
                  56889999***************99.9******99765 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 1.3e-08
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggf...taLvragtkvvl.sevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPlt 251
                   +L+a+g++h ++++dn ll ++  l++ +f   +   ++ +   + s    +f PpEl+  r g        +  + d W +G++ y +    +P++
   KKY17346.1 227 EYLHAQGILHRDIKPDNCLLTKDDVLKVVDFgvsEMFEKDSEMLTVkSAGSPAFLPPELCVVRHG------GISGKAADIWSMGVTLYCLRFGRIPFE 318
                  69**************************998332234455555555566669*********9877......5678899**********9888777775 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   8.5e-07     0.003     148     194 ..     211     258 ..     130     262 .. 0.83
   2 ?   -2.9   0.2       1.5   5.2e+03     123     152 ..     713     744 ..     656     762 .. 0.50

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 8.5e-07
                 HHHHHHHHHHHH--S...SS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 148 leeqvlaalaallpg...elptvllHgDlhpgNllvdpddgrvtGviDfe 194
                  eeq + ++++l++g     ++++lH+D++p+N l+++d + +  v+Df+
  KKY17346.1 211 SEEQCRCWFRDLMLGieyLHAQGILHRDIKPDNCLLTKD-DVL-KVVDFG 258
                 45667888999999999999*****************33.443.6****8 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.5
                 CCHHHHHHCHHH.CCCGCCTCC.HHHHHHHHH CS
         APH 123 lellrqlesata.rllaselld.lleeleeqv 152
                 l++ r ++s    +l+a++ ++ ++ ++e+++
  KKY17346.1 713 LKEGRARVSGISrALRAAAREEyERRKAERRA 744
                 33333333333322222222223233333332 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   6.2e-06     0.022     306     343 ..     213     249 ..      98     285 .. 0.87
   2 ?    1.3   1.1     0.032   1.1e+02     184     309 ..     706     819 ..     700     827 .. 0.47

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.2e-06
  Pkinase_fungal 306 kellealrDaIkghrsLflkagiLHrDiSenNilitds 343
                     +++ + +rD   g + L+  +giLHrDi  +N l+t +
      KKY17346.1 213 EQCRCWFRDLMLGIEYLH-AQGILHRDIKPDNCLLTKD 249
                     56667799**********.****************932 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.032
  Pkinase_fungal 184 rksEaelLkkaeergvegvarlvahedveekdddiaeiRkgldvtka.ekfrskrkvvsssssqelsskaevklkksesskkvekrsvdssv.st 276
                     r +E + Lk+  ++ v+g+ r +              +R++ + +ka +  r  ++v +++ + + ++++  ++++ ++++ +  ++ ++sv ++
      KKY17346.1 706 RVKEIRHLKEG-RARVSGISRALRAA-----------AREEYERRKAeR--RARETVETAKAEAHKTKHSPEPHEDGRGQDGPPPKEAKESVqQR 786
                     45555555555.44555555544443...........444444444411..22222223333333444444455555555555545555555333 PP

  Pkinase_fungal 277 skrsrlenrvhrrlvispvGkpiekaespkell 309
                     +++ ++  r  + l+ s +Gk+ ek +  k  +
      KKY17346.1 787 DEEMTPIGRSSSSLLSSVSGKAWEKGKLAKSSF 819
                     333334466666666666666666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      606  (0.0338); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.48
# Mc/sec: 5252.36
//
Query:       KKY17347.1  [L=298]
Description: hypothetical protein UCRPC4_g05670 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-80  268.1  19.2    3.7e-78  262.8  17.9    2.1  2  Glyco_hydro_28  Glycosyl hydrolases family 28


Domain annotation for each model (and alignments):
>> Glyco_hydro_28  Glycosyl hydrolases family 28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0   0.00052       9.4       1      24 [.      64      86 ..      64      92 .. 0.90
   2 !  262.8  17.9   2.1e-82   3.7e-78     124     325 .]      91     296 ..      88     296 .. 0.99

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.00052
  Glyco_hydro_28  1 Cssivlsqlevpksgelldllklk 24
                    Cs+ivls ++vp+ g++ldl++l+
      KKY17347.1 64 CSTIVLSAVAVPS-GTTLDLTDLE 86
                    *************.*******998 PP

  == domain 2  score: 262.8 bits;  conditional E-value: 2.1e-82
  Glyco_hydro_28 124 kdltisditidasagd....hNtDgidvgsskgvtisntnikngDDciainsgsknisitnvtcggGHGlSiGSvggrsdntVknvtvkdskvkn 214
                     +dl ++ditid+s+gd     NtDg+d+g+s+g ti+ ++++n+ Dc+ainsg+ +i +++ +c+gGHGlS+GSvggrsdntVk+vt++ s+v+n
      KKY17347.1  91 TDLIMTDITIDNSDGDdngaANTDGFDIGDSTGFTIKSATVYNQHDCVAINSGE-TIVFSGGYCSGGHGLSVGSVGGRSDNTVKGVTFESSTVIN 184
                     799*************9999**********************************.**************************************** PP

  Glyco_hydro_28 215 senGvRIKtikgatgtvsnvkyeniklknva.ypividqdYenkeptgkptsgvkisdvtfknvtgtvks.aeavkllcekgskcsdvtmsdvki 307
                     s+nGvRIKt+++atg+v++v+y++i+l++++ y+ivi qdYen++ptg pt+gv+i+d tf+++tgtv+s a ++ +lc+++s csd+t++d++i
      KKY17347.1 185 SQNGVRIKTVYDATGEVTDVTYKDITLSGITkYGIVIRQDYENGSPTGDPTTGVPITDCTFDEITGTVESdAVEIFILCGDDS-CSDWTWEDIDI 278
                     ***********************************************************************************.*********** PP

  Glyco_hydro_28 308 tggkstskcknvkskasc 325
                     tgg++++ c+nv+s+asc
      KKY17347.1 279 TGGETSDGCENVPSGASC 296
                     ****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1837.30
//
Query:       KKY17348.1  [L=394]
Description: putative pal1 cell morphology [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-07   31.8   1.1    2.8e-07   31.4   0.1    1.9  2  Pal1      Pal1 cell morphology protein
  ------ inclusion threshold ------
        7.8    4.9   9.0         11    4.5   9.0    1.3  1  KAR9      Yeast cortical protein KAR9


Domain annotation for each model (and alignments):
>> Pal1  Pal1 cell morphology protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       1.7   1.6e+04      62      66 ..      61      65 ..      38      94 .. 0.50
   2 !   31.4   0.1   3.1e-11   2.8e-07       1      50 [.     178     223 ..     178     272 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.7
        Pal1 62 ldevf 66
                +++ f
  KKY17348.1 61 KNNPF 65
                22222 PP

  == domain 2  score: 31.4 bits;  conditional E-value: 3.1e-11
        Pal1   1 DtiDkLDvtglfgglfHHdGPfDAvtphrNknskaaPvlAfpkdgannsl 50 
                 DtiD LDv g     +HH+GPfDA    rN++ +++P+ A ++   +++l
  KKY17348.1 178 DTIDSLDVVGH---PYHHEGPFDATYYARNTSFRNSPLEAVAASN-EEAL 223
                 9*******987...59************************87643.3444 PP

>> KAR9  Yeast cortical protein KAR9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   9.0    0.0012        11     574     659 ..      34     113 ..       8     239 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0012
        KAR9 574 vsPlerkkskspsPtaRsvsrvsarrasskptviaspnsrtslldepkyskltlrkalertersrqsYagtslsrsssveseegkq 659
                   P e +++ s  P++ s sr+s++++ ++p + +s  s+++ ++++++s+ +      + + sr +Y + ++s s+ +++   ++
  KKY17348.1  34 FPPSETASTVSRNPSVQSPSRTSSKLQKNNPFRKSSSASKNPFINKSEISRRV------SDAGSRNTYPSPPPSASPRQDKFAHRN 113
                 34555555555556777777777777777777777777777777777777722......335677777777777665554433322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.51
# Mc/sec: 2326.01
//
Query:       KKY17361.1  [L=327]
Description: putative rrna methyltransferase nop1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-102  341.9   0.0   1.4e-102  341.6   0.0    1.0  1  Fibrillarin      Fibrillarin
    8.2e-06   25.7   0.0    1.2e-05   25.1   0.0    1.2  1  GCD14            tRNA methyltransferase complex GCD14 subunit
  ------ inclusion threshold ------
      0.016   14.9   0.0      0.047   13.3   0.0    1.7  2  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
      0.042   13.6   0.0      0.063   13.0   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Fibrillarin  Fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.6   0.0  3.1e-106  1.4e-102       1     225 [.      84     324 ..      84     325 .. 0.98

  Alignments for each domain:
  == domain 1  score: 341.6 bits;  conditional E-value: 3.1e-106
                  EEEECSSTTEEEEE.TTSSEEEEEE-SSTT--SSSSEEEEETTE.................EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEESTT CS
  Fibrillarin   1 veeheklegvyivk.ekgdarlatknlvpgekvYgEklikveee.................EyRvWnpfrsKlaaailkglkelpikkgskvLYlGaa 80 
                  +e+h +++gv++++ +k+d  l+tkn++pge+vYgEk+i+v+                   EyRvWnpfrsKlaa+il gl+e+ i++g+kvLYlGaa
   KKY17361.1  84 IEPH-RHAGVFVARgGKEDL-LVTKNFTPGESVYGEKRISVDAPttpglngdatpvpntkiEYRVWNPFRSKLAAGILGGLDEIFIRPGAKVLYLGAA 179
                  5788.9********666666.*********************9999**************************************************** PP

                  TSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEEEEEEEEEEEHH CS
  Fibrillarin  81 sGttvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflkeggyllisikar 178
                  sGt+vsHv+Divg++g+vyavefs+r++r+l+++a++R+n++Pi+eDAr+P +Yr+lv +vDvifaDvaqpdqari+ +na+lflk gg +l+sika+
   KKY17361.1 180 SGTSVSHVADIVGPTGTVYAVEFSHRSGRDLVTMATHRTNVIPIVEDARHPLRYRMLVGMVDVIFADVAQPDQARIVGLNAHLFLKIGGGVLVSIKAN 277
                  ************************************************************************************************** PP

                  HHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS
  Fibrillarin 179 sidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225
                  +id+t+++e vf++ev+k++ee++k++eq++lep+e+dh++v g y+
   KKY17361.1 278 CIDSTAKAEVVFAREVQKMREERIKPKEQLTLEPFERDHCIVAGIYQ 324
                  ********************************************997 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   2.7e-09   1.2e-05      37     153 ..     166     283 ..     161     304 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 2.7e-09
       GCD14  37 elkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDvckeGfdeevsgkvDavfLDlPaPwea.iphaaka 134
                  ++pG++v+  G+ sg+  + +a  v+PtG ++++ef + r  + +  +  h+   +v   + D+ +    + + g vD +f D+ +P++a i  + ++
  KKY17361.1 166 FIRPGAKVLYLGAASGTSVSHVADIVGPTGTVYAVEFSH-RSGRDLVTMATHRT--NVIPIVEDARHPLRYRMLVGMVDVIFADVAQPDQArIVGLNAH 261
                 589************98777899**************54.55555555566654..3333445665443346677**************9965555555 PP

       GCD14 135 l..kkeggrlCsf.sPCieqvq 153
                 l  k  gg+l s  + Ci+   
  KKY17361.1 262 LflKIGGGVLVSIkANCIDSTA 283
                 4458899999997356887665 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.1e-05     0.047      10      73 ..     171     232 ..     166     252 .. 0.74
   2 ?   -2.0   0.0      0.52   2.3e+03      31      50 ..     283     302 ..     276     310 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
                      -EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCC.HHHHHHHHHHTT--SEEEEES-CTCCHH CS
  Methyltr_RsmB-F  10 etilDlcaaPGgKTthiaelmknkgtvvAvdankeR.lkrvaenlkrLgvtntivleaDarkidk 73 
                       ++l l aa G   +h+a+++ ++gtv+Av+ +++   + v+  ++r +v     +  Dar++ +
       KKY17361.1 171 AKVLYLGAASGTSVSHVADIVGPTGTVYAVEFSHRSgRDLVTMATHRTNVI---PIVEDARHPLR 232
                      6789999************************87654156677788886665...55567777644 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.52
                      TTTSEEEEEESSCCCHHHHH CS
  Methyltr_RsmB-F  31 knkgtvvAvdankeRlkrva 50 
                      +++ +v+A +++k R +r++
       KKY17361.1 283 AKAEVVFAREVQKMREERIK 302
                      56678999999999999987 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.4e-05     0.063      69     108 ..     165     204 ..     152     254 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.4e-05
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBH CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvsierik 108
                 + +++ga+vL +G+ sG     +a +vg++g+v ++e ++
  KKY17361.1 165 IFIRPGAKVLYLGAASGTSVSHVADIVGPTGTVYAVEFSH 204
                 4599*******************************99764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 1956.23
//
Query:       KKY17362.1  [L=153]
Description: putative isopropanol dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-05   23.7   0.0    5.6e-05   23.1   0.0    1.4  1  ADH_zinc_N    Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.025   15.7   0.1       0.22   12.6   0.0    1.9  2  ADH_zinc_N_2  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   6.2e-09   5.6e-05      66     128 ..      51     112 ..       3     114 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 6.2e-09
                 SCSHHHHHHHHHCEEEEEEEEECSCTSSEEEEEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHH CS
  ADH_zinc_N  66 vGsgatleaalkllkpgGrlvvvGggkgeeefdlrnlllkeksilGsllgslreefkealdll 128
                 +++ + +++++ +l + Gr+ ++G ++ge +++l+ +++++++++G ++++ r+ ++++++++
  KKY17362.1  51 AANSTHFRSCILALSHSGRMCFMGSVGGELVIPLSVFVRRDLQLKGKWMYT-RQIVRNLIKMI 112
                 4457889******************999999********************.99999999886 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1     0.086   7.7e+02     111     129 ..       7      25 ..       3      27 .. 0.85
   2 ?   12.6   0.0   2.4e-05      0.22      32     124 ..      53     141 ..      26     147 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.086
                   EGGGHHHHHHHHHSS--SS CS
  ADH_zinc_N_2 111 pleeaaeAhrylesgrarG 129
                    l+e+ae h+++e+ + +G
    KKY17362.1   7 RLKELAESHERVEAVQITG 25 
                   5899*********987777 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.4e-05
                   HHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHHHH----EEEE..EEGGGHHHHHHHHHS CS
  ADH_zinc_N_2  32 gealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaalieeGklrpvvdrv..fpleeaaeAhryles 124
                   + ++++ ++ +l++ Gr++ +g+      ++   + r+  ++k +++        ++i + l ++ie G l+   ++v  f le+  +A+ + e+
    KKY17362.1  53 NSTHFRSCILALSHSGRMCFMGSVGGELVIPLSVFVRRDLQLKGKWMY------TRQIVRNLIKMIEVGMLKLGGQKVdqFALEDWEKAFNAAEE 141
                   455557788788888***999987788889999999999999999998......5778**************87776666*********998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 984.37
//
Query:       KKY17363.1  [L=284]
Description: putative malate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-34  117.8   0.5      1e-33  117.0   0.5    1.4  1  DUF3455   Protein of unknown function (DUF3455)
    3.2e-08   33.6   4.0    9.6e-08   32.1   4.0    1.9  1  DUF2990   Protein of unknown function (DUF2990)


Domain annotation for each model (and alignments):
>> DUF3455  Protein of unknown function (DUF3455)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.0   0.5   1.1e-37     1e-33       4     158 .]      87     283 ..      84     283 .. 0.89

  Alignments for each domain:
  == domain 1  score: 117.0 bits;  conditional E-value: 1.1e-37
     DUF3455   4 n.klalvalgrGtqnYtCaasaagaaeptavgavAtLfdatclaaklpdlleslpslv................................aelklvgkh 69 
                 + +l++v l+ GtqnYtC +  + +a+pta+ga A+Lf+ +c+aa++p+ll+slp l+                                 +  + g h
  KKY17363.1  87 GsSLKHVLLAMGTQNYTCPSTLNASATPTAIGAYANLFNVSCIAANYPSLLDSLPVLAyqyklpstyyptagtvgespetslssdyamqpLNIVYSGVH 185
                 4489**************998888888*************************************************************999999***** PP

     DUF3455  70 fftdgtgPtfdldldg....skvtgkkvasvaApkdaa....gavawllltakes..gtlsgvtevyRveTaGGsapatCekagekfeveYaAeYvFyg 158
                  f ++t+P fdld +g      ++gkkva+++A  +a+    gav++l+l  +e+   +++++t+vyR+ T+GGs p+tCe+ +++f++eY+  Y++yg
  KKY17363.1 186 TFYNTTTPRFDLD-SGdvnnGLILGKKVANSTAWPNATqgeyGAVPYLKLDVEENedTSTESYTNVYRMLTQGGSNPKTCENYTGEFSIEYTGLYYIYG 283
                 ***9999******.5523225566777775555333335888********99888889999*************************************6 PP

>> DUF2990  Protein of unknown function (DUF2990)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   4.0   1.1e-11   9.6e-08       2      64 .]      10      82 ..       9      82 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 1.1e-11
     DUF2990  2 cLaaislAAPtnlfdd......vYdfsdeLaefygkVskyIeeakd..sikapaaCdtSk..islPsyasgLP 64
                +La ++l APt  ++       +Y +s eLa fy  Vsk I+++kd  s +a  aC++ +  +  Ps +++LP
  KKY17363.1 10 SLALTALSAPTSTTEKreamkmAYTYSPELASFYNAVSKEINNIKDtaSYQANDACNMASanANFPSSPTALP 82
                78999999**9877643333348*********************9977789999***97522679*****999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2001.41
//
Query:       KKY17364.1  [L=741]
Description: putative golgi membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-87  292.8   0.2    1.9e-87  292.8   0.2    3.6  4  CASP_C          CASP C terminal
  ------ inclusion threshold ------
      0.011   15.5   8.1      0.011   15.5   8.1    4.7  5  Laminin_I       Laminin Domain I
      0.012   16.0   1.0      0.012   16.0   1.0    6.8  4  ZapB            Cell division protein ZapB


Domain annotation for each model (and alignments):
>> CASP_C  CASP C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.4       0.1     6e+02      71      99 ..      40      77 ..       2      90 .. 0.50
   2 ?   -9.0  22.5         3   1.8e+04       5     133 ..     174     314 ..     170     379 .. 0.61
   3 ?   -1.5   0.7      0.21   1.3e+03       9      47 ..     331     369 ..     320     423 .. 0.61
   4 !  292.8   0.2   3.2e-91   1.9e-87       2     251 ..     450     698 ..     449     699 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.1
      CASP_C 71 aeesesaesss..................essiLpivtsQRDRFrkr 99
                +         +                  +s+  +iv  QRD   +r
  KKY17364.1 40 F---------QkaigawrsidlhetirklDSTASEIVAHQRDSIVQR 77
                1.........0222223334445555567999999999999976666 PP

  == domain 2  score: -9.0 bits;  conditional E-value: 3
      CASP_C   5 eelseleaeleeqkeLnekLEndllkvqseasnas.....kasdassagsevsrkaese....gr.......ksptssiisgaeesesaesssessiLp 87 
                  +l+e+e++le++++L ++LE+  ++  +  ++++     +++++++a +++ ++   +     r       + + s+  ++  ++++a+s++ +  L+
  KKY17364.1 174 FQLEETEKRLEDERTLRKQLESAQESKAKDIEASWtrvleEKQENWDATKKALEE---KvenqDRllkelkaNYEVSQRLDQGGDGDTARSTATAAELD 269
                 5789999999999999999987554433333333200001222233333222222...133331144433322233333333333444555558999** PP

      CASP_C  88 ivtsQRDRFrkrnaeLEeelrkqeetvsslraeiaslqkDNlkLYE 133
                 ivts  +R  +r a++E+  ++ ++++ +  +  +  +k Nl   E
  KKY17364.1 270 IVTSELERTSHRLADMEARNEQLRKELAQAVSSSQ-TEKSNLTVEE 314
                 *****************999988888777655433.3445555555 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.21
      CASP_C   9 eleaeleeqkeLnekLEndllkvqseasnaskasdassa 47 
                 +le+   e+++L  +L++ + ++++++sna +++d  + 
  KKY17364.1 331 KLESARFEKETLKGELDSKIRNAERQKSNALSENDDLRE 369
                 444445566677777777777777777777655554433 PP

  == domain 4  score: 292.8 bits;  conditional E-value: 3.2e-91
      CASP_C   2 klqeelseleaeleeqkeLnekLEndllkvqseasnaskasdassagsevsrkaes.e.grksptssiisgaeesesaesss...........essiLp 87 
                 +lqeels+++ ele++++L ++LEndll+vq+ea+  + +s++s+ag++ sr+++s + gr sptssiisg+++++ a +             + +iLp
  KKY17364.1 450 ELQEELSRTNVELEKSQNLASTLENDLLRVQREAA--FPSSAMSVAGTYSSRYPRSsQrGRVSPTSSIISGFDSHSLAPNGLdslrsgdsggvGGGILP 546
                 79*****************************9987..899**************55244667***********99888776599*************** PP

      CASP_C  88 ivtsQRDRFrkrnaeLEeelrkqeetvsslraeiaslqkDNlkLYEkvRYlqsYnrgskastksssessssasalganpnassveagaeldkYrkaYEe 186
                 ++++QRDRF+++na+LEeel+k++ tv+slr+ei+slqkDNl LYEk RY + Ynrg+ ++              ++ p +s++++g +ld+Y+++YE+
  KKY17364.1 547 MIQAQRDRFKQKNAQLEEELQKTYATVTSLRQEISSLQKDNLTLYEKSRYASAYNRGAPSRG------------DATIPMSSDTSSGLSLDRYKSQYEA 633
                 ********************************************************997641............1345788999999************ PP

      CASP_C 187 slnPfaaFrgrEseraykrLsllerlvlsltrlvlanrtsRnlflvYalaLHllvfltlyevssl 251
                 +++PfaaFrgrEs+raykr+sl+er+++s tr+vlanrtsRnlf++Y+l+LH+++fltly+++++
  KKY17364.1 634 NISPFAAFRGRESARAYKRMSLPERMIFSATRMVLANRTSRNLFAAYCLGLHFMIFLTLYWMGTT 698
                 **************************************************************986 PP

>> Laminin_I  Laminin Domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.51     3e+03      86     103 ..      51      68 ..      32      86 .. 0.76
   2 ?   15.5   8.1   1.8e-06     0.011      41     136 ..     147     242 ..     130     252 .. 0.93
   3 ?    3.2   6.8      0.01        61      13      89 ..     281     358 ..     273     384 .. 0.87
   4 ?    2.6   3.9     0.015        90      17      61 ..     437     481 ..     414     489 .. 0.69
   5 ?    3.4   0.2    0.0091        54      62     104 ..     551     593 ..     544     609 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.51
   Laminin_I  86 eLaekikkladnikeile 103
                 +L e i+kl+ +++ei++
  KKY17364.1  51 DLHETIRKLDSTASEIVA 68 
                 688889999999888876 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.8e-06
   Laminin_I  41 kieilekelesLaqeteeLqkkatqvlakaqkvnaesertlnnakeLaekikkladnikeilekvatlneneealpssklseelaeaqrlLeelrs 136
                  + i+e +l +++ e e Lq+ +++ + + ++++++ e+     k+L+ + +  a++i++   +v +  +++ ++ +++l+e+ ++ +rlL+el++
  KKY17364.1 147 SLVISEDTLPKVNAEKEHLQQSVNKISFQLEETEKRLEDERTLRKQLESAQESKAKDIEASWTRVLEEKQENWDATKKALEEKVENQDRLLKELKA 242
                 567899***********************************************************99999************************86 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.01
   Laminin_I  13 apykinanledltkeLqeklskesakkskieileke.lesLaqeteeLqkkatqvlakaqkvnaesertlnnakeLae 89 
                 ++  ++a  e+l+keL + +s  + +ks++ + e      L++e  +L  k++ ++ + ++++ e +  + na+  + 
  KKY17364.1 281 RLADMEARNEQLRKELAQAVSSSQTEKSNLTVEEDPsYLRLQSENSSLLRKLESARFEKETLKGELDSKIRNAERQKS 358
                 567899999***********************99851579*************************9999999987655 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.015
   Laminin_I  17 inanledltkeLqeklskesakkskieilekelesLaqeteeLqk 61 
                 +  + +dl+k+L+e  ++ s +++++e +++  ++L+++  + q 
  KKY17364.1 437 LRVSHQDLQKQLEELQEELSRTNVELEKSQNLASTLENDLLRVQR 481
                 444556777777777777777777777776666777766655555 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.0091
   Laminin_I  62 katqvlakaqkvnaesertlnnakeLaekikkladnikeilek 104
                 +  +  +k  ++++e ++t    ++L ++i  l+++   + ek
  KKY17364.1 551 QRDRFKQKNAQLEEELQKTYATVTSLRQEISSLQKDNLTLYEK 593
                 3344444555555555555555555555555555544444444 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -10.9  19.3         3   1.8e+04       9      59 ..     141     194 ..     139     252 .. 0.83
   2 ?  -11.4  16.2         3   1.8e+04       9      33 ..     321     345 ..     263     389 .. 0.62
   3 ?   -0.1  11.6      0.22   1.3e+03      10      53 ..     424     467 ..     415     483 .. 0.66
   4 ?   16.0   1.0     2e-06     0.012       8      45 ..     561     598 ..     548     605 .. 0.91

  Alignments for each domain:
  == domain 1  score: -10.9 bits;  conditional E-value: 3
        ZapB   9 LEskiqkai...dtitlLqmeieeLkeeneelkeenreleeeneqlkeereawq 59 
                 LE+++++++   dt+ +   e e L++ +++ + + +e e+ +e +++ r++++
  KKY17364.1 141 LEASVESLViseDTLPKVNAEKEHLQQSVNKISFQLEETEKRLEDERTLRKQLE 194
                 888999998888999999999999*****9999999999977777776666554 PP

  == domain 2  score: -11.4 bits;  conditional E-value: 3
        ZapB   9 LEskiqkaidtitlLqmeieeLkee 33 
                 L+s  ++++ ++++ ++e e Lk e
  KKY17364.1 321 LQSENSSLLRKLESARFEKETLKGE 345
                 3333333333333333333333333 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.22
        ZapB  10 EskiqkaidtitlLqmeieeLkeeneelkeenreleeeneqlke 53 
                  ++ +k+  ++t L+   ++L+++ eel+ee  + + e+e+ ++
  KKY17364.1 424 LARNKKLTSEMTVLRVSHQDLQKQLEELQEELSRTNVELEKSQN 467
                 35666777777777777777777777777777777766666654 PP

  == domain 4  score: 16.0 bits;  conditional E-value: 2e-06
        ZapB   8 qLEskiqkaidtitlLqmeieeLkeeneelkeenrele 45 
                 qLE+  qk+  t+t+L++ei+ L+++n +l e+ r  +
  KKY17364.1 561 QLEEELQKTYATVTSLRQEISSLQKDNLTLYEKSRYAS 598
                 9****************************999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2353  (0.13124); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        68  (0.00379274); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.50u 0.37s 00:00:01.87 Elapsed: 00:00:00.60
# Mc/sec: 3744.59
//
Query:       KKY17365.1  [L=1068]
Description: putative tgf beta receptor associated protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-07   29.3   0.0    2.3e-06   28.0   0.0    1.6  1  Vps39_2   Vacuolar sorting protein 39 domain 2
  ------ inclusion threshold ------
       0.02   15.2   0.0      0.071   13.4   0.0    2.0  2  Vps39_1   Vacuolar sorting protein 39 domain 1


Domain annotation for each model (and alignments):
>> Vps39_2  Vacuolar sorting protein 39 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   2.5e-10   2.3e-06       2      69 ..     944    1011 ..     944    1020 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2.5e-10
     Vps39_2    2 elLskhaerldplevLdllPdelplkdlesflekalrnslekkreeqvvkklrkaeklsveeellklr 69  
                  +lLsk a+ +dp+ vL+ +P++++++ l++f+ ++lr+   +k  + v+++l  ae+l+ + e ++ +
  KKY17365.1  944 DLLSKFAAWFDPMDVLNSIPSDWSVALLSEFFTRTLRKIRIEKDDSLVLRGLAAAENLRKQVEWVEGC 1011
                  6899******************************************************9998877665 PP

>> Vps39_1  Vacuolar sorting protein 39 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.9e-06     0.071      27     104 ..     625     700 ..     613     704 .. 0.81
   2 ?   -3.6   0.0       1.5   1.3e+04      50      63 ..     867     880 ..     860     887 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.9e-06
     Vps39_1  27 CdlkdveeiLkkekkykeLidlYygkklheeALeLlkeladedeedeedsslkgeketiiqylqklseedldlileys 104
                  d++   + L++ +++  L  lY+++kl ++ L  +++++d +++ + + + +  +  + +yl  l+++  +l+ ey 
  KKY17365.1 625 GDFDRAVTLLERYQRLFVLSRLYQSRKLSKDVLATWRRIIDGEDDPSGELTAEAGEIRVRKYLVTLRNS--QLVEEYG 700
                 57888999*********************************76666666666666666789***99665..4555555 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.5
     Vps39_1  50 ygkklheeALeLlk 63 
                  +++ h++AL+ l+
  KKY17365.1 867 ARQGHHSRALNSLI 880
                 67999*****8664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1068 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.35s 00:00:01.18 Elapsed: 00:00:00.55
# Mc/sec: 5890.80
//
Query:       KKY17366.1  [L=742]
Description: putative ribosome assembly protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.3e-127  423.2   0.2   9.5e-127  422.3   0.2    1.4  1  Noc2      Noc2p family


Domain annotation for each model (and alignments):
>> Noc2  Noc2p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  422.3   0.2  5.3e-131  9.5e-127       3     297 ..     382     689 ..     380     691 .. 0.99

  Alignments for each domain:
  == domain 1  score: 422.3 bits;  conditional E-value: 5.3e-131
        Noc2   3 lelvlkkvYlalvknskftsvktlplinfmknsaveLygldeavsyqhafvyIrqLAihLRnalktkkkeayksvynWqfvhsldlWsrvlsaacsk.. 99 
                 +e+vlk+vY+ +vk s++t+++tl +in+mknsa+eL+g+d++v y+++f++IrqLA+hLR ++++ +k++yk++ynWq+vhsld+Wsrvl+++c++  
  KKY17366.1 382 REAVLKSVYEGIVKGSRNTTLHTLAGINLMKNSAAELWGIDQKVGYTTGFNFIRQLAMHLRTNVTKPTKDSYKTIYNWQYVHSLDFWSRVLATHCNSlv 480
                 799************************************************************************************************ PP

        Noc2 100 .....keselkpLiypLvqvilgaikLiptaryfPlrlhlirsLlrLsestgtfIPvaplllevLeskelkkkpkkkstlkpldfevtlkvpksylktr 193
                      kes+l+pLiyp vq++lg+++Lipta+yfPlr++lirsLlrLs+st+tfIP+a+ l+evL+s+e+kk+pk+ stl+pldf+++++ p+syl+tr
  KKY17366.1 481 eaqngKESQLRPLIYPAVQITLGVMRLIPTATYFPLRFQLIRSLLRLSQSTETFIPLASPLIEVLNSTEMKKPPKP-STLRPLDFSLNYRTPQSYLRTR 578
                 ****************************************************************************.9********************* PP

        Noc2 194 vyqdglieevvellleylallsksiaFPElvlpvvvqLkrflkstk.......neklrkqlkqLvekleenskfieekRekvefspkdreeveafekel 285
                 vyqd++ ++v+ell+e+l+l+sksiaFPEl lpvvv+Lkr+l+st+       n+kl++++  L++kle+n+++iee+R+kv+fsp+dr+ev+af+ke 
  KKY17366.1 579 VYQDNVGDQVIELLSEFLVLWSKSIAFPELQLPVVVMLKRWLRSTNsrttgnkNSKLNQAVLLLIQKLESNARWIEERRNKVTFSPRDRAEVDAFLKEE 677
                 ********************************************988999999999******************************************* PP

        Noc2 286 ksektPlgkyvk 297
                 k+e+tPlg++v 
  KKY17366.1 678 KWENTPLGAFVV 689
                 **********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1431  (0.0798148); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 4724.79
//
Query:       KKY17367.1  [L=232]
Description: putative vacuolar protein sorting-associated protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-69  233.3   0.0    2.1e-69  233.0   0.0    1.1  1  VPS28     VPS28 protein


Domain annotation for each model (and alignments):
>> VPS28  VPS28 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.0   0.0   1.2e-73   2.1e-69       1     188 [.      27     230 ..      27     231 .. 0.97

  Alignments for each domain:
  == domain 1  score: 233.0 bits;  conditional E-value: 1.2e-73
       VPS28   1 LaelysiivtleklEkaylkdaitekeYtstcnrLlsqyktilkdeevkkefksleeFvkkykldcpaAlkRlkegvpatveh................ 83 
                 Lae+ysii tl+ lEkay+kdaite+eYt+ c++Ll+qyk+il+de+v++ef +l++F++k+k++cp+A++Rl++g+p+tv                  
  KKY17367.1  27 LAEIYSIIRTLDGLEKAYIKDAITEQEYTEFCSKLLKQYKSILSDETVSREFVDLDSFARKWKIECPRAIERLRIGLPSTVALaqghtpqpsiqqghdn 125
                 8*******************************************************************************998899***********99 PP

       VPS28  84 ..akakkskekkesaklvaeatqnFITlmDalkLnlkakdqlhplLsdLveslnkleklekdfegksklvkWliklnkmkasdeLseeearqllfdles 180
                   ++a+   + ++s  +++ at+nFIT++Dal+Lnl++kd lhplL+++++s+nk+  +e dfeg++++++Wli ln m+a++ L+e+++r+l+fd+e+
  KKY17367.1 126 alSTASPAPAPTSSGPAILSATENFITFLDALRLNLTSKDALHPLLTEVIQSVNKV--TEADFEGRARIIHWLIVLNGMRATQDLTEDQVRELSFDMEQ 222
                 99888888889999999***************************************..89*************************************** PP

       VPS28 181 aYkefykl 188
                 aY++f+++
  KKY17367.1 223 AYNGFKSM 230
                 *****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1488.84
//
Query:       KKY17368.1  [L=373]
Description: putative extracellular scp domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-17   62.1   4.8      4e-16   60.0   4.8    2.0  1  CAP       Cysteine-rich secretory protein family


Domain annotation for each model (and alignments):
>> CAP  Cysteine-rich secretory protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   4.8   2.2e-20     4e-16       2     126 .]      44     159 ..      43     159 .. 0.88

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 2.2e-20
                 HHHHHHHHHTT----EE-HHHHHHHHHHHHHHHHH.T---S-GGG--HHHHHHTT-TEEEEEES--CCCHHHHHHTSHH................HHHH CS
         CAP   2 eahNeyRaaaglppLkwdatLekaAqdhardcaashsdsssspeggdllkyaenagkeniaaaseaaedavdsWysepgtynkgketegs...ighftn 97 
                   +N+yR  +   + +w++++++aA ++a  c     ++++s + +       n       a+ ++++d+v +Wy+e  + +++ ++ g+   + hft+
  KKY17368.1  44 TETNNYRVLHQSVAATWNDSMASAAATYASGC----VFEHPSLYEQG-----SNLA-----AGFDNPTDVVTAWYDEVNDPGYDFSNPGPqdgTLHFTQ 128
                 679*****************************....55555555443.....2222.....4466888*********************9********* PP

                 HT-SS--EEEEEEEEBTTS-E....EEEEEE CS
         CAP  98 llwpkstkvGcavatcgngsf..tfivvcny 126
                 l+w++st++Gc++++cg +++  + ++vc+y
  KKY17368.1 129 LVWNASTQIGCGAYYCGGTNSvpGWYMVCYY 159
                 ******************999**889***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       929  (0.0518155); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 2362.36
//
Query:       KKY17369.1  [L=257]
Description: hypothetical protein UCRPC4_g05613 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-20   73.0   0.1    4.3e-20   72.7   0.1    1.0  1  Glyco_hydro_18  Glycosyl hydrolases family 18


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.1   2.4e-24   4.3e-20       5     186 ..      12     230 ..       9     255 .. 0.71

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 2.4e-24
                     EEEGGGGGSS.G.....CSHTTTESEEEEEEEEEEE...............TTTEEEESSTTHH.........HHHHHHHHHH.HHTSTT-EEEE CS
                     xxxxxxxxxx.x.....xxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxx.........xxxxxxxxxx.xxxxxxxxxxx RF
  Glyco_hydro_18   5 Yysswesygn.n.....ylpsaklthiiyaFakidg...............engkvvvsdwedl.........gnfeqlkklk.kkknpgvkvll 68 
                     Y+++ ++++  +     y   +++++i +aF+  +                +           +         ++ +  +++  +++  g+ +ll
      KKY17369.1  12 YWGQDSTNDGsQqslttYCANSEIDIIPMAFLYEFYgtgdepvinfansgnD-----------CstfsgtellDCPSIGTDITtCQETYGKTILL 95 
                     888777775544555444779***********88888885555544444431...........43333333333344568888899999****** PP

                     EEEETTTTT.HHHHHHTSHHHHHHHHHHHHHHH..HHCT...........-SEEEEEES-TTTSTCHHHHHHHHHHHHHHHHHHHHHHTSTTCEE CS
                     xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx..xxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18  69 siGGwtdss.gfslaastdasrkkfadsvvsll..rkyg...........fDGiDidweypggnpedkenytallkelrealdkakategkkllL 149
                     siGG+t+++ gfs++     ++ + a+++++++  ++yg           +DG+D+d+e         +n  a++++lr+ +d++   + k ++L
      KKY17369.1  96 SIGGATYTEgGFSSTD----EAVTQANKIWAMFgpEQYGstalrpfgsaiLDGFDFDFESS------VSNTAAFANQLRALMDAD---TSKSYYL 177
                     *******555999993....456789*******99555555555666************43......779999999***977733...5799*** PP

                     EEEEESSHHHHHHHCHHHHHHHHTSEEEEETTTSSS.................T CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................x RF
  Glyco_hydro_18 150 saavpasasdlskgydlpkiakylDyvnvmtYDfhg.................s 186
                     +aa++++++d s+ + + + a y D ++v++Y+ +                  +
      KKY17369.1 178 TAAPQCPYPD-SADQSMLDGAVYFDAIWVQFYNNYCgltafestsdpgefnfeT 230
                     **********.4445677778888********8887565555555555554442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1903.73
//
Query:       KKY17370.1  [L=667]
Description: putative choline kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-52  177.2   0.0    6.1e-52  176.3   0.0    1.5  1  Choline_kinase  Choline/ethanolamine kinase
    1.5e-17   63.0   0.0      3e-17   62.0   0.0    1.5  1  Choline_kin_N   Choline kinase N terminus
    6.6e-07   29.5   0.1    1.4e-06   28.4   0.1    1.5  1  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.3   0.0     1e-55   6.1e-52       1     198 [.     129     360 ..     129     374 .. 0.92

  Alignments for each domain:
  == domain 1  score: 176.3 bits;  conditional E-value: 1e-55
                     SSSEEEEEEE-TTCTTCCHHHHHHHHHHHHHHTTSSS-EEEEETTEEEEE--TCEE--TTGGGCHHHHHHHHHHHHHHTTCHH...TTSSSS-HH CS
  Choline_kinase   1 ekkkvllRiygkkteelidretElvvfallserglgpklygifenGrieefiesrtlstedlrepeiskkiAkklaelHslel..eseskespsl 93 
                     +++k+llR+yg+++e+lidr++El ++++ls++++gp+l+g+f+nGr+eef+++rtl+++dlr+p++s++iAk+++elH+ +   ++e++  p++
      KKY17370.1 129 QPQKLLLRVYGPQVEHLIDRDSELAILRRLSRKRIGPRLLGTFTNGRFEEFLHARTLTPQDLRDPNTSTHIAKRMRELHEGVEllPEEREGGPFV 223
                     5899****************************************************************************99888899999**** PP

                     HHHHHHH................HHCCS.TT..ECHHGGCCHCCCTHHHHHHHHHTHHHHH.H......CHGG-EEEE-S--SGGGEEE...... CS
  Choline_kinase  94 wktmqkw................llnkeaqtkakkekkkkqlklinledlekeleklekll.e......elespvvfcHnDlqegNill...... 159
                     +k++++w                +++  + +++ ++k++  +  ++++ +++ +ek +k+l +        + ++vf+HnD+q+gN+l       
      KKY17370.1 224 FKNWDSWvdrcervitwldeqilAQDAPVSRTKPSWKSRGLVLGVEWSIFRHVVEKARKYLyDyyggskGVRDKLVFAHNDTQYGNLLRltpsgt 318
                     ********************98777788888999999999*********************5588877666777********************* PP

                     .......-CTTEEEE--GTT-EEEEHHHHHHHHHHHTTEEHHHCS CS
  Choline_kinase 160 ......nkeekklvlIDFEYagynyrgfDlanhfiEwagdyeeee 198
                           ++++k+lv+IDFEYa++n  + ++anhf+ ++     ++
      KKY17370.1 319 splllpANSHKQLVVIDFEYASANLPAVEFANHFAYVEH---RPQ 360
                     **********************************75444...444 PP

>> Choline_kin_N  Choline kinase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   4.9e-21     3e-17       1      46 [.      11      83 ..      11      88 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 4.9e-21
  Choline_kin_N  1 sslsdedelvpsvdavLDnskpsdy...........................FKeeilrLlhtLalkgWrdvp 46
                   +++ d+d+lvp+v+a LDnsk+++y                           FK++i+rL+htL+lkgWr++p
     KKY17370.1 11 TEWYDGDILVPNVEAYLDNSKTLAYsggladneetsnatserkakdkqhwdtFKKDIVRLTHTLRLKGWRRIP 83
                   6899*******************************************************************98 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.1   2.3e-10   1.4e-06      18     214 ..     125     357 ..      91     367 .. 0.72

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 2.3e-10
                 ETT-...-EEEEEE-TT.S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTE.EEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH..- CS
         APH  18 tpag...ryvlrrnppa.raaeeirrevallrlLakagvpvPevlagdtddeeigl.lfalieyvpgrsllrklsaaqlpellealgeflaalhqvd.p 110
                 +p++   +++lr++ p+ +   +  +e+a+lr L++  +  P++l + t++ ++++ +++ ++ ++ r++ +      + +++ ++ e++  +  ++  
  KKY17370.1 125 GPRRqpqKLLLRVYGPQvEHLIDRDSELAILRRLSRKRI-GPRLLGTFTNGRFEEFlHARTLTPQDLRDPNT------STHIAKRMRELHEGVELLPeE 216
                 4443466999*******99999999************9*.9*****99999999976666666666666666......888999999998888888877 PP

                 STTTB-SHHCHTCCHH...........HHHHCHHH.CCCGCCTCC..HHHHHHHHHHHHHHHH--S............SS-EEEE-SS-SGGGEEEC.. CS
         APH 111 aalpladflaqdlell...........rqlesata.rllaselld..lleeleeqvlaalaallpg............elptvllHgDlhpgNllvd.. 181
                 ++ +++ f  +d +++           + l++ ++  + ++ ++   l++ +e  + +++ + +++             ++ v+ H+D   gNll    
  KKY17370.1 217 REGGPFVFKNWDSWVDrcervitwldeQILAQDAPvSRTKPSWKSrgLVLGVEWSIFRHVVEKARKylydyyggskgvRDKLVFAHNDTQYGNLLRLtp 315
                 8899997777777766444444444432222222223344444444444444444555555555556666999************************** PP

                 .............TTEEEEE---TT-EEEECCHHHHCCHHHCSC CS
         APH 182 ...........pddgrvtGviDfedaglgpplyDlavllrswts 214
                            ++++ v  viDfe+a++  p++++a + +++ +
  KKY17370.1 316 sgtsplllpanSHKQLV--VIDFEYASANLPAVEFANHFAYVEH 357
                 *********87776777..******************9966443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 4463.42
//
Query:       KKY17371.1  [L=670]
Description: putative map kinase kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.3e-50  169.4   0.0    5.1e-47  160.5   0.0    2.1  2  Pkinase         Protein kinase domain
    1.9e-27   96.2   0.0    2.9e-26   92.3   0.0    2.0  2  Pkinase_Tyr     Protein tyrosine kinase
    8.3e-05   21.8   0.2    0.00013   21.1   0.2    1.2  1  Seadorna_VP7    Seadornavirus VP7
     0.0075   15.6   0.0      0.011   15.0   0.0    1.1  1  Kinase-like     Kinase-like
  ------ inclusion threshold ------
       0.11   11.2   0.0       0.16   10.7   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0   0.00093       3.3       4      21 ..     280     297 ..     277     301 .. 0.86
   2 !  160.5   0.0   1.4e-50   5.1e-47      23     264 .]     339     581 ..     334     581 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00093
                 EEEEEEESSEEEEEEEET CS
     Pkinase   4 leklGeGsfGkVykavek 21 
                 + +lG+G++G+Vyk++++
  KKY17371.1 280 MDELGKGNYGTVYKVRHS 297
                 689************986 PP

  == domain 2  score: 160.5 bits;  conditional E-value: 1.4e-50
                 TTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHH.HTTEE CS
     Pkinase  23 tgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeeakkiakqilegleylH.skgii 120
                 +g  +A+K+i+ e ++ k   ++++E+ +l+++ +p+i+ +y++f ++  +y+++e+++gg++++l+     ++e  +kki+ +++ gl+ l  +++ii
  KKY17371.1 339 SGIVMAMKEIRLELDEAKF-AAIIMELDVLHRCVSPFIIDFYGAFFQEGAVYICMEWMDGGSVDKLYG--DGIPEGVLKKITLSTVMGLKSLKdDHNII 434
                 56789********999988.59*********************************************7..58********************98899** PP

                 -SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH............TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHH CS
     Pkinase 121 HrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvl............keneyskkvDvWslGvilyelltgkppfsgekgkekve 207
                 HrD+Kp NiL++++g++Ki+DFG++ +l  s  +++ +g + Y+APE +            ++  ys ++D+WslG+ ++e  +g+ p++     e+++
  KKY17371.1 435 HRDVKPTNILCNTRGQVKICDFGVSGNLVASI-AKTNIGCQSYMAPERIsgggvaqaganpGGGTYSVQSDIWSLGLSIIECAMGRYPYP----PETYN 528
                 ******************************99.****************9999988877666699*************************....56677 PP

                 HHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 208 keldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 +++ ql +i++     +     a+   e a+d+++ +l+k pk R+t ++ll+h +l
  KKY17371.1 529 NIFSQLSAIVD----GEPPDLPAEGYTEAARDFVRGCLNKIPKLRPTYAMLLRHAWL 581
                 78888444433....344555667779*****************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.036   1.3e+02       3      20 ..     279     296 ..     277     303 .. 0.83
   2 !   92.3   0.0     8e-30   2.9e-26      23     257 ..     335     577 ..     321     579 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.036
                  EEEEEEEESSEEEEEEEE CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtl 20 
                  + ++lG+G++G+V++ + 
   KKY17371.1 279 TMDELGKGNYGTVYKVRH 296
                  5689**********9765 PP

  == domain 2  score: 92.3 bits;  conditional E-value: 8e-30
                  TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr  23 ekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLe 120
                  + +++ +  a+K ++ e +e + ++++ e+++++++  p i+ ++g+  +e+ ++i +e+++gG+++k   +     +    l +++l    G++ L+
   KKY17371.1 335 KGDTSGIVMAMKEIRLELDEAKFAAIIMELDVLHRCVSPFIIDFYGAFFQEGAVYICMEWMDGGSVDKLYGDG----IPEGVLKKITLSTVMGLKSLK 428
                  4566778899*******************************************************99877665....8888899999999*******8 PP

                  H.TTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE............EEHHHHHHHHHHHHHHHHTTSSGT CS
  Pkinase_Tyr 121 s.kklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk............ftsksDvWsfGvllwEiftlgesp 205
                  + ++++Hrd+   N+L +++ +vki+DfG++ ++      + ++++  +  +mapE ++ +             ++++sD+Ws G  ++E +  g+ p
   KKY17371.1 429 DdHNIIHRDVKPTNILCNTRGQVKICDFGVSGNL----VASIAKTNIGCQSYMAPERISGGGvaqaganpgggtYSVQSDIWSLGLSIIECAM-GRYP 521
                  6267*****************************9....556667778899*********99889999***********************887.**** PP

                  TTTSHHHHHHHHH...HTTEES-BBTT.SBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 206 ypglkneevlekl...kegkrlekpek.cpeelyelmkkcweedpeeRptfselve 257
                  yp  + ++++++l    +g+  + p++  +e+  ++++ c+++ p+ Rpt++ l++
   KKY17371.1 522 YPPETYNNIFSQLsaiVDGEPPDLPAEgYTEAARDFVRGCLNKIPKLRPTYAMLLR 577
                  **998888877762225677777665426777889***************998865 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.2   3.7e-08   0.00013     147     188 ..     420     457 ..     413     475 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 3.7e-08
  Seadorna_VP7 147 ivaglkdLmdfhsestnllhGDcnpenlmcDknGylklvDPv 188
                    v+glk+L+d h    n++h D++p n++c+  G++k+ D +
    KKY17371.1 420 TVMGLKSLKDDH----NIIHRDVKPTNILCNTRGQVKICDFG 457
                   589********9....9*********************9954 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.2e-06     0.011     162     244 ..     430     516 ..     413     530 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.2e-06
  Kinase-like 162 akglvhgkftvdnllldekgglmlggftaLvragtkvvl.sevekgfaPpEllgsrgg...ytrknktkmthkldaWqlGlviyriw 244
                  ++ ++h +++++n+l + +g++++ +f+      ++    +  ++++  pE ++  g      +    +++ + d W lGl+i   +
   KKY17371.1 430 DHNIIHRDVKPTNILCNTRGQVKICDFGVSGNLVASIAKtNIGCQSYMAPERISGGGVaqaGANPGGGTYSVQSDIWSLGLSIIECA 516
                  578************************85444444433324677***99999987555321122234689999*********97655 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.5e-05      0.16     315     342 ..     420     447 ..     407     486 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.5e-05
  Pkinase_fungal 315 aIkghrsLflkagiLHrDiSenNilitd 342
                      + g++sL  + +i+HrD+   Nil + 
      KKY17371.1 420 TVMGLKSLKDDHNIIHRDVKPTNILCNT 447
                     6889*********************983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4619.64
//
Query:       KKY17372.1  [L=298]
Description: putative phenazine biosynthesis-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-28   97.8   0.0      5e-17   62.3   0.0    2.0  2  PhzC-PhzF  Phenazine biosynthesis-like protein


Domain annotation for each model (and alignments):
>> PhzC-PhzF  Phenazine biosynthesis-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   2.8e-21     5e-17       1     115 [.       8     121 ..       8     142 .. 0.82
   2 !   33.8   0.0   1.3e-12   2.3e-08     208     278 ..     213     288 ..     159     293 .. 0.80

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 2.8e-21
                 EEET-SSTTSSEEEEEEESTT....CS-HHHHHHHHHHHTSSEEEEEE--S.STTSSEEEEEE-SSSEES--HHHHHHHHHHHHHHCT-S-SCEEEEEE CS
   PhzC-PhzF   1 vdaFtespfkGNpaaVvldad....elddeelqsiAaelnlseTaFllkps.dekarfrlRyFTPvaEvdlcGHatlasahalaekglvasaetvelet 94 
                 +d+Ft+  f GN++a+v         ++ ++  +iA+e+nl eT+F+l+p+   + ++ + ++ P  E+ ++GH+ +++ + l++++    ++  +++ 
  KKY17372.1   8 LDVFTSTRFAGNQLAIVSIPPelvnTITYDQKLQIAKEFNLAETVFILEPDsPTATNIPINIYLPSTEISFAGHPAIGTGIYLLTQQTR-FQNVTSVNP 105
                 59*************9986654666677777788**************9984467899*********************9999998875.78888999* PP

                 TTEEEEE.EEEEETCEECCEE CS
   PhzC-PhzF  95 kaGilpvkslkekddgeelli 115
                 +aGi+p++ ++ + +     i
  KKY17372.1 106 RAGIIPLT-YDADTQT----I 121
                 ******96.4333333....2 PP

  == domain 2  score: 33.8 bits;  conditional E-value: 1.3e-12
                 EGGGTEEEESS-HHHHHHHHHHHHHCC-S....SSEEEEEEEE-GGGT--EEEEEEEE..E-TTCEEEEEEEE-EE CS
   PhzC-PhzF 208 aPklGivEDpvtGsAsgaLaaylseklnl....eesakikieqgqalgrsgtleveve.vkvdkekervkvtGkAv 278
                       vED++tGsAs+aLa yl          e+  + +i qg ++gr++ + v+v+ + ++k  + v ++G Av
  KKY17372.1 213 GSSHDPVEDAATGSASCALACYLCLTEIPvekgEGPFEYHIIQGVEMGRKSDIWVKVQrTTDGKGVQGVWLRGGAV 288
                 5555668****************875433344678899********************88889999*******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1955.55
//
Query:       KKY17373.1  [L=337]
Description: putative homoserine acetyltransferase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-10   41.1   0.5    2.3e-09   37.3   0.5    2.1  1  Abhydrolase_1  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.037   13.3   0.0       0.18   11.0   0.0    1.9  2  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.5   2.5e-13   2.3e-09      29     119 ..      69     160 ..      55     311 .. 0.74

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 2.5e-13
                    TSEEEEEEETTSTTSSSTTTGB.CHH.SHHHHHHHHH..HH..HHHCTTSSEE.EEEETHHHHHHHHHHHHHGGGEEEEEEESE....CSSCCHHH CS
  Abhydrolase_1  29 gfdvillDlrGvgySspapacinddy.gtasvaddld..ri..ldalgddklt.lvGhSmGGmialayaaeyperVkalvllga....idpaasli 114
                     + vi++ l G+g+Ss ++++  d++ +  s++d+++  ++   ++l++++l  ++G+SmGG++  ++a +yp  +++ + +++    +       
     KKY17373.1  69 NHNVIVVALFGNGESSSPSNT--DNFpQSLSYQDCVQaqYLllTNHLKIQSLDaVIGFSMGGQTTYHWAVMYPAFMRSAIPICTsartS------- 155
                    68899999************9..66643445555555443344*****************************************33332....... PP

                    HHHHH CS
  Abhydrolase_1 115 eaqrq 119
                      +rq
     KKY17373.1 156 LHNRQ 160
                    33333 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     2e-05      0.18      79     113 ..     120     154 ..      64     175 .. 0.71
   2 ?   -0.4   0.0     0.062   5.5e+02     183     218 ..     263     298 ..     258     303 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2e-05
  Hydrolase_4  79 fllGhSmGGliallyllrypdkvaglilsaPalki 113
                   ++G SmGG ++ +++ +yp+ ++ +i +++  + 
   KKY17373.1 120 AVIGFSMGGQTTYHWAVMYPAFMRSAIPICTSART 154
                  699******************99988877666555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.062
  Hydrolase_4 183 leeraakitlPllllhGeaDkvvdpeasrelyerlg 218
                  lee+ ++i+  +ll+ G  D+    eas++ +++l+
   KKY17373.1 263 LEESLSSIKSRVLLMPGRTDQYFRVEASEKEMKSLR 298
                  567778889999999999999999999988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2079.38
//
Query:       KKY17374.1  [L=324]
Description: putative ubiquitin carboxyl-terminal hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-70  237.6   0.0    1.6e-70  237.1   0.0    1.2  1  Peptidase_C12  Ubiquitin carboxyl-terminal hydrolase, family 
    8.4e-12   44.8   0.2    1.7e-11   43.8   0.2    1.5  1  UCH_C          Ubiquitin carboxyl-terminal hydrolases


Domain annotation for each model (and alignments):
>> Peptidase_C12  Ubiquitin carboxyl-terminal hydrolase, family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.1   0.0   1.8e-74   1.6e-70       1     210 [.       8     223 ..       8     224 .. 0.88

  Alignments for each domain:
  == domain 1  score: 237.1 bits;  conditional E-value: 1.8e-74
                    ---EE--HHHHHHHHHHHT--S..EEEE--S.SH.HHTTS.---EEEEEEE.----------.---------..T...TS------STTGHHHHHH CS
  Peptidase_C12   1 wlplEsdPevftelleklGvkgvqfeevysldde.llasl.pvyglillfkyieeeeeeeerekeeeekdeeeeevsekvfFakQtiqnaCgtiAl 94 
                    w ++Esd++vft+l+e lGvk+vqfee+y+ldd+ +l++l pvygl++lfk+i  + ++++ +++++++d+++  ++e++fFa+QtiqnaCgt+Al
     KKY17374.1   8 WSTIESDAGVFTSLIETLGVKNVQFEELYELDDPaALQNLsPVYGLVFLFKWIGGS-SKTD-NPQDGSYDRTA-IDEENLFFAHQTIQNACGTQAL 100
                    99********************************99****88***********876.4444.36666766654.55789***************** PP

                    HHHHHH..ST....S--.-TTSHHHHHHHHHTTS-HHHHHHHHHT-HHHHHHHTTSC........---SSTHH......HHS--EEEEEEEEETTE CS
  Peptidase_C12  95 LhvllNleke....aeeielgseLkkfkeftkelspeergealenseeireahnsfa......segqteapee......eedvafHFiafvpvngk 174
                    L+vllN +++    ++ i+lg++L++fk+ft++++p+ rgeal+ns+ ire+hnsfa      +e       +      +ed  +HFia++++ng+
     KKY17374.1 101 LSVLLNQDESslptDTAIDLGPQLSDFKAFTTGFPPDLRGEALSNSDLIRETHNSFAksspfvDE-------TvreatvTED-VYHFIAYTHHNGT 188
                    ******654499999999***************************************66655422.......1233344678.8************ PP

                    EEEE-TTS.S-EEEEE--T..TTHHHH.HHHHHHHT CS
  Peptidase_C12 175 lyeLDGlkegPidlgeveeeeedledavrkviqeri 210
                    lyeLDGl+++Pi++g+++   +d+  +v +vi++ri
     KKY17374.1 189 LYELDGLQPHPISHGPCN-GFDDFPGKVIPVIRRRI 223
                    *****************5.579**9999******98 PP

>> UCH_C  Ubiquitin carboxyl-terminal hydrolases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.2   1.9e-15   1.7e-11       8      39 ..     255     286 ..     252     292 .. 0.92

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 1.9e-15
       UCH_C   8 LeeEeeKrerwkeENaRRrHNYlPFIvelLka 39 
                 Le+E  Kr+ w++EN++RrHN+++FI e+Lk 
  KKY17374.1 255 LENERRKRAHWEWENTLRRHNFVGFIGEMLKG 286
                 89****************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.50
# Mc/sec: 1951.14
//
Query:       KKY17375.1  [L=354]
Description: putative glucose-inducible sam-dependent methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-20   73.9   0.0    2.1e-20   73.2   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
    2.6e-05   24.1   0.0      4e-05   23.5   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
      0.001   18.6   0.0     0.0018   17.8   0.0    1.4  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.014   14.7   0.0      0.023   14.0   0.0    1.2  1  GidB             rRNA small subunit methyltransferase G


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   4.6e-24   2.1e-20       6     171 ..     116     304 ..     111     307 .. 0.77

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 4.6e-24
  Methyltransf_16   6 eLkieedtge..sigrkvWdaavvlvkylekklake...lganelsklsvlELGsGtGlvGlavaellpeakviltDleellellkknielnkn 94 
                      eL ++e   +  + g k W +++vl+  l   + ++    + ++ ++ +vlELGsGtGl Gla+a   p+a v ltDle ++++l++n+ +nk+
       KKY17375.1 116 ELILHEPSLTedNLGLKTWASSLVLASQLRYLT-DNippIRDRRGHRPKVLELGSGTGLLGLAAAIVWPHAAVKLTDLEVIVKNLRRNVGVNKH 208
                      56666654332499**********998776643.3346678899999**********************************************9 PP

  Methyltransf_16  95 ......alksk...vkvevLdWg......eeleedllekeevDlilaaDcvYledslelLvkvLkellkkesk..vlvaykkr..reaekkFfk 169
                             ++++   v+vevLdW       ++ + + ++  ++D+++aaD +Y     + Lv++++e l+ + +   l+ay  r  +e+e+  f+
       KKY17375.1 209 tlgqsrGVSEDalgVQVEVLDWSlspsssHHQPVKSVKYDTFDVVIAADPLYSPLHPQWLVNTISENLSLDEDarALIAYPLRkgYEQERYCFE 302
                      776666233324449*******6333332445567778889***********************987766655577888776633666666666 PP

  Methyltransf_16 170 ll 171
                      ++
       KKY17375.1 303 KI 304
                      65 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   8.9e-09     4e-05       7     130 ..     145     299 ..     140     324 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 8.9e-09
  Methyltransf_23   7 eelsdklerllpklraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae...........................kakkaqkdqf 71 
                      ++l d++  + +++  + +vL++G GtG l   ++  +    v + Dl  +  ++++                             + ++++++
       KKY17375.1 145 RYLTDNIPPIRDRRGHRPKVLELGSGTGLLGLAAAIVWPhaAVKLTDLEVIVKNLRRnvgvnkhtlgqsrgvsedalgvqvevlDWSLSPSSSH 238
                      466777777777788888**********664444443334667799998888888888888888888888888888888888884445555555 PP

  Methyltransf_23  72 deqeaaepqgkfdlIvlrevlehvpdppellrqiatllk..pgGylllseplaslkedrll 130
                      ++   +++ ++fd++++ + l++  +p  l+++i ++l+  +++++l+ +pl++ +e +++
       KKY17375.1 239 HQPVKSVKYDTFDVVIAADPLYSPLHPQWLVNTISENLSldEDARALIAYPLRKGYEQERY 299
                      5555778889**************************9999567**********99887774 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.1e-07    0.0018      31      80 ..     160     208 ..     141     226 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.1e-07
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTG CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankl 80 
                 ++ kvl lG+G+G+lg+a+a  +p+a+v+l+d +   ++  ++n+  nk+
  KKY17375.1 160 HRPKVLELGSGTGLLGLAAAIVWPHAAVKLTDLEVI-VKNLRRNVGVNKH 208
                 5668****************************9864.6777777766665 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.1e-06     0.023      34      79 ..     146     191 ..     139     197 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.1e-06
                 CHHHHHHHGGCS-CCC-.EEEETSTTTTTHHHHHHH-TTSEEEEEE CS
        GidB  34 hlldslsvlellkekrdkviDvGsGaGlPGipLaiarpelkltLle 79 
                  l+d +  ++    +r kv+ +GsG Gl G+  ai++p+ ++ L +
  KKY17375.1 146 YLTDNIPPIRDRRGHRPKVLELGSGTGLLGLAAAIVWPHAAVKLTD 191
                 566777777777777888***********************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 2142.18
//
Query:       KKY17376.1  [L=730]
Description: hypothetical protein UCRPC4_g05620 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-14   52.0  13.5    6.2e-14   52.0  13.5    3.5  4  WSC             WSC domain
    9.4e-06   25.2   2.5    1.4e-05   24.6   0.1    2.6  2  Glyco_hydro_16  Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> WSC  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.3      0.62   5.6e+03      30      56 ..     164     190 ..     150     200 .. 0.67
   2 ?   -3.4   0.5       1.3   1.1e+04      65      71 ..     289     295 ..     276     307 .. 0.46
   3 !   52.0  13.5   6.9e-18   6.2e-14       1      82 []     394     470 ..     394     470 .. 0.95
   4 ?    2.0   2.1     0.026   2.3e+02      29      69 ..     575     621 ..     559     633 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.62
         WSC  30 CaafCkakgykyagledgseCyCgnsl 56 
                  +  C+ +g +  g+ + s+C  + ++
  KKY17376.1 164 TSPNCTIAGANQLGTLQTSDCDTSVNY 190
                 455677777777777777777655555 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.3
         WSC  65 sssCnas 71 
                 +s+C+a+
  KKY17376.1 289 DSTCSAK 295
                 2223322 PP

  == domain 3  score: 52.0 bits;  conditional E-value: 6.9e-18
         WSC   1 ylGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCGg 82 
                 y+GCy +s  s+ ++++  a++s+m++++C++ C+  g ++ag+ ++  CyCg+s+++++++ ss+sCn++C+G+s +tCGg
  KKY17376.1 394 YYGCYGSS--SNFTSFNLIATESSMSNDRCVSLCS--GSPFAGTYQN-SCYCGSSVDNSTTPVSSESCNIPCPGSSGETCGG 470
                 99****77..78888888999*************9..99*****988.*********************************8 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.026
         WSC  29 kCaafCkakgykyagledgseCyCgnslpaaavkassss......Cn 69 
                 + +++C +   +y  ++  +eC C  +  a++v+a+ +       C+
  KKY17376.1 575 TYVDVCPTGLATYTLTSTVNECGCTRTKGASSVEATIAMtttekvCT 621
                 45788998889999999999****99999988888766555555654 PP

>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   1.6e-09   1.4e-05      19      86 ..      85     159 ..      68     230 .. 0.81
   2 ?   -3.2   0.3      0.54   4.9e+03      29      64 ..     647     682 ..     598     688 .. 0.56

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.6e-09
                     TSEEEEEEEE....EEEEEEEECCEESSEEEEEEEE..---STTEEEEEEEETGGTSTTEEEEE.EEETT-TTEE CS
  Glyco_hydro_16  19 getltltldk....esgsrikskksflyGkvearik..aaksaGvvtafylssedekahdEiDi.EflGndtgkv 86 
                     ++t+tl +d     +++ ri+s+ks+++G +  +    ++   G+++af++   ++++ +EiDi E + + t+++
      KKY17376.1  85 DDTTTLATDGsdggRKSVRISSTKSYTHGLFIGDFGhmPGGICGTWPAFWTFGPNWPTNGEIDIiEGVNSATTNL 159
                     3467777777777788999**********99888876688889********9999***********997766653 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.54
                     EEEEEEEECCEESSEEEEEEEE---STTEEEEEEEE CS
  Glyco_hydro_16  29 esgsrikskksflyGkvearikaaksaGvvtafyls 64 
                     +s s+ +s+   +      ++++a ++G  +a++ s
      KKY17376.1 647 SSESTSESSAAATIAGAVTTVQVAAGTGAAVAYVGS 682
                     222333334444444555566677777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       984  (0.0548832); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.48
# Mc/sec: 4544.49
//
Query:       KKY17377.1  [L=143]
Description: putative mitosis protein dim1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-70  234.4   0.3    2.9e-70  234.2   0.3    1.0  1  DIM1           Mitosis protein DIM1
    0.00043   20.2   0.0    0.00055   19.9   0.0    1.2  1  Thioredoxin    Thioredoxin
     0.0057   17.0   1.2     0.0087   16.4   1.2    1.4  1  Thioredoxin_8  Thioredoxin-like
  ------ inclusion threshold ------
      0.063   13.0   0.2       0.33   10.7   0.1    1.9  2  Thioredoxin_9  Thioredoxin
      0.084   12.5   0.0       0.13   11.9   0.0    1.4  1  DUF953         Eukaryotic protein of unknown function (DUF953


Domain annotation for each model (and alignments):
>> DIM1  Mitosis protein DIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.2   0.3     8e-74   2.9e-70       2     133 .]       6     137 ..       5     137 .. 0.99

  Alignments for each domain:
  == domain 1  score: 234.2 bits;  conditional E-value: 8e-74
                 S-EE-SHHHHHHHHHH-SSSEEEEEEE-TT-HHHHHHHHHHHHHHHHTTTTEEEEEEETTT--TTSCCCTT-SSSEEEEEETTEEEEEE-SSS--SSB- CS
        DIM1   2 lpkLetkeevdqailseeerlvviRFGrdedaeClklDelLakiaeklknfaviylvdidevpdfnkmyeledpvtilffyrnkhmkvDfgtgdnnKln 100
                 +p+L t+++vdqai+se+erlvviRFGrd+d++C+++De+L+kiaek+knfaviy++d+d+vpdfn+myel+dp+ti+ff+rnkhm++Dfgtg+nnKln
  KKY17377.1   6 IPHLITGWHVDQAIMSEDERLVVIRFGRDWDPDCMRQDEVLYKIAEKVKNFAVIYVCDLDQVPDFNQMYELYDPMTIMFFFRNKHMMCDFGTGNNNKLN 104
                 89************************************************************************************************* PP

                 S----HHHHHHHHHHHHHHHHHT-SEEE-SS-T CS
        DIM1 101 fvledkqelidiietiyrgakkgkglvvspidy 133
                 +vledkqelidiietiy+gakkg+glvvsp+dy
  KKY17377.1 105 WVLEDKQELIDIIETIYKGAKKGRGLVVSPKDY 137
                 *******************************97 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.5e-07   0.00055      13      86 ..      18      92 ..       9     109 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.5e-07
                 HHTT.TSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEE CS
  Thioredoxin 13 evak.ekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevk 86
                 ++++ +++lv++ F  +w + C +   +l k+ae++k+  +++ +d d+ +d  + ye     t+++f  +k++ 
   KKY17377.1 18 AIMSeDERLVVIRFGRDWDPDCMRQDEVLYKIAEKVKNFAVIYVCDLDQVPDFNQMYELYDPMTIMFFFRNKHMM 92
                 4444378999***************************999999****************9988988887776433 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   1.2   2.4e-06    0.0087       2      74 ..      25     103 ..      23     118 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.4e-06
                    SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-.S..S-HHHHHHHGGGS......-TTSEE.EE-TT-HHHH CS
  Thioredoxin_8   2 kvvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsl.d..kkeeefekylkkn......kkpwlsvpfddkkrnkl 74 
                    ++v++ fg +w+p+c++  + l ++ ek+k   ++ ++yv   d   + +++ +    +      +++ + ++f+ +++nkl
     KKY17377.1  25 RLVVIRFGRDWDPDCMRQDEVLYKIAEKVK---NFAVIYVCDlDqvPDFNQMYELYDPMtimfffRNKHMMCDFGTGNNNKL 103
                    7899*************************7...*******652522355555555555567666666666667777777666 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   9.1e-05      0.33      32      78 ..      15      61 ..       9      76 .. 0.87
   2 ?    0.6   0.0      0.13   4.6e+02      60      92 ..      67      97 ..      63     107 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.1e-05
                   -HHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE CS
  Thioredoxin_9 32 teekiksiekklkilvltedwCgDaavnvPvlakiaelnpnievkil 78
                   ++++i s +++l ++ +  dw +D+++   vl kiae  +n  v ++
     KKY17377.1 15 VDQAIMSEDERLVVIRFGRDWDPDCMRQDEVLYKIAEKVKNFAVIYV 61
                   5678999999999999**********************999988776 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.13
                   HHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT CS
  Thioredoxin_9 60 vPvlakiaelnpnievkillrdenlelmdqylt 92
                   vP ++++ el + +++ +++r ++  +m ++ t
     KKY17377.1 67 VPDFNQMYELYDPMTIMFFFRNKH--MMCDFGT 97
                   889999999999999999999654..5666655 PP

>> DUF953  Eukaryotic protein of unknown function (DUF953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.5e-05      0.13      33      64 ..      31      62 ..      20      84 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.5e-05
                TS-BSSHHHHHHHHHHHHHHHH-SS-EEEEEE CS
      DUF953 33 eGesWCPdCvkaepvieealkeapedvklvrv 64
                 G+ W PdC++ ++v+++  +++ + +++ ++
  KKY17377.1 31 FGRDWDPDCMRQDEVLYKIAEKVKNFAVIYVC 62
                599*************9998887654444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.34s 00:00:00.96 Elapsed: 00:00:00.60
# Mc/sec: 721.80
//
Query:       KKY17378.1  [L=521]
Description: hypothetical protein UCRPC4_g05622 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-16   61.1   0.1    3.7e-16   59.6   0.1    1.9  2  Abhydrolase_1  alpha/beta hydrolase fold
    1.2e-08   34.9   0.1    3.2e-08   33.6   0.1    1.7  1  Abhydrolase_4  TAP-like protein


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.1   4.1e-20   3.7e-16       2     136 ..      73     249 ..      72     354 .. 0.85
   2 ?   -1.4   0.0      0.16   1.4e+03      33      46 ..     422     435 ..     359     451 .. 0.77

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 4.1e-20
                    EEEEE-STTTCGGG.........GTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHH.................................. CS
  Abhydrolase_1   2 vlvilhGlpgssdv.........waerglapaLakdgfdvillDlrGvgySspapacinddy.................................. 54 
                    ++++++G+pg s++         w++  l+     d+fd+i +D+rGv ++    +c+                                      
     KKY17378.1  73 SILFNPGGPGASGIdflyssystWWK--LF----GDDFDLISFDPRGVERTLGQFTCQE--Vgssnltasnssslaqalsisiaqgkqceaenpek 160
                    79********6666667776679***..44....66*********************66..44445577777888888999999999999999999 PP

                    ....SHHHHHHHHHHH.....HHHCTTSSEE.EEEETHHHHHHHHHHHHHGGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHH CS
  Abhydrolase_1  55 ....gtasvaddldri.....ldalgddklt.lvGhSmGGmialayaaeyperVkalvllgaidpaaslieaqrqqaksfpdffdgyaadca 136
                        gta va+d+ +i      + +  d l  ++G+S+G++++ ++aa++p++V ++vl+g        + +++++ +s+   +d ++a+++
     KKY17378.1 161 geiiGTAFVARDMLQIvnaleENGYQADGLLrYMGFSYGTALGDTFAAMFPDKVGRMVLDGN---QDPNEYWNLMSFASDFQDMDLTVAAFF 249
                    99999999******885552333345677888******************************...555666777888888888887777765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.16
                    EEEEETTSTTSSST CS
  Abhydrolase_1  33 illDlrGvgySspa 46 
                    +l+D+rG+g+ +++
     KKY17378.1 422 VLVDHRGFGHCTAS 435
                    56777777776554 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.1   3.5e-12   3.2e-08      44     103 .]     402     461 ..     376     461 .. 0.95

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 3.5e-12
  Abhydrolase_4  44 rDpaTPyegakklakalggavlvtvegeGHgalaagntCvdkavdaYLltGelpaddtvC 103
                     D    ye+a+++   ++g+vlv  +g GH++ ++++ C  ka ++Y+++G+lpa +tvC
     KKY17378.1 402 DDYLASYEQAENANALFPGSVLVDHRGFGHCTASQYSICTLKAQADYMKNGTLPAVGTVC 461
                    577889*****************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 3148.97
//
Query:       KKY17379.1  [L=294]
Description: putative alpha beta [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-25   88.7   0.1    1.6e-24   87.0   0.1    1.7  1  Abhydrolase_1  alpha/beta hydrolase fold
    7.1e-14   52.9   0.0    8.9e-14   52.6   0.0    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    0.00067   19.0   0.0       0.31   10.3   0.0    2.2  2  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
       0.14   12.5   0.2        2.2    8.7   0.0    2.4  2  EHN            Epoxide hydrolase N terminus


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.1   3.6e-28   1.6e-24       1     255 [.      30     276 ..      30     278 .. 0.82

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 3.6e-28
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGG CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeype 96 
                    pv+++lhG+p+ss  +++  l+p La  ++++i++Dl+G+g+++ ++a++   y++a++a++++ ++dal + k+ +  +++G  ++l +a++ p+
     KKY17379.1  30 PVILLLHGFPASSFQFRN--LIPLLAI-KYRIIAPDLPGFGFTDMSSATN-FIYTFANLANVIEEFVDALSLTKFSIYIFDYGAPTGLRLALKRPH 121
                    79****************..******8.********************87.6899***************************************** PP

                    GEEEEEEESECSSCCHHHHHHHHHHH.HHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHHH CS
  Abhydrolase_1  97 rVkalvllgaidpaaslieaqrqqak.sfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalksieq 191
                     ++a+++ ++  + ++ +  + ++   ++ +  d +aa++ +      la e+   ++++     l   + +   +  +++  + +   +++    
     KKY17379.1 122 AIQAIISQNG--NVFEEGFGDVFWNDlRDYWSTDINAAENRNALKKNALALESIKWQYEDGS-PDL--SRIAPETYYLDYMLTTRPGIADAQLDLF 212
                    **********..66666666666644034444555555555555566666666666666554.445..5556666667777777777777777778 PP

                    HHHCCHHHHHHHHHC.THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHH CS
  Abhydrolase_1 192 wpttdsaklllrlre.lknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafle 255
                    w+++d+ + + r+ e ++   +p l ++g +D+l+ p     +++ lp+  +v++ dagH+a+ +
     KKY17379.1 213 WDYKDNIANYPRFHEyFRTSQVPLLAVWGKNDQLFIPPGAQAYKRELPD-AEVHLLDAGHFAVET 276
                    8888888888888887667777***************9999999999**.***********9876 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0     2e-17   8.9e-14       1     219 [.      32     283 ..      32     284 .. 0.59

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 2e-17
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTST.....S-GGCS--HHHCHHH.HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC.... CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhG.....rsdpppldledladl.aalldelaagggpvvlvGHSlGGalalaaapla.... 86 
                    +lllHG+++  ss+++++L +lla  ++++apDlpG+G     +++   +++++la + ++++d+l     ++ +   ++G+  +l+   la    
     KKY17379.1  32 ILLLHGFPA--SSFQFRNLIPLLAIKYRIIAPDLPGFGftdmsSATNFIYTFANLANViEEFVDALS--LTKFSIYIFDYGAPTGLR---LAlkrp 120
                    89****777..555555*********999*********54444335555999999999999999995..9999********998888...555554 PP

                    .................EE.EEES-..----TTT........S----TTHHHHHHTT-CCCCHCCH...S-HSCCCCHHHCCCCHCHCCCGHH... CS
  Abhydrolase_6  87 ...............lvvg.vlldppptalpagl........laaalelllallallrllawlsre...plprlfladedadaawrarlarla... 152
                                     +g v+ +   +              +a  ++ l++   +l +  w  ++   +   + +a+e+  ++  ++l++ +   
     KKY17379.1 121 haiqaiisqngnvfeEGFGdVFWND--L-----RdywstdinAAENRNALKKNALALESIKWQYEDgspD--LSRIAPET--YYLDYMLTTRPgia 205
                    5556555433333221112333333..3.....0333446654555555555555666689997766431..23333333..22222222222112 PP

                    .HHCC...HHC........HTTCCHHTT-TTGCEEEC.TT-C.HHHHCHHCCCHSTTEEETCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 153 .alla...glg........llpaaawadlpvpllvlg.geDp.lvprllerllaqagarlpvvlpgaGHlphleepdevae 219
                     a      +++        ++ ++ +++  vpll ++ ++D+  +p+ ++++ + +  + +v l +aGH+  + + +++a+
     KKY17379.1 206 dA--QldlFWDykdnianyPRFHEYFRTSQVPLLAVWgKNDQlFIPPGAQAYKR-ELPDAEVHLLDAGHFAVETNREDIAD 283
                    21..12221112222322122344555555555655647777*99999******.55555566899*****9955599987 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   6.9e-05      0.31       5     105 ..      30     127 ..      26     135 .. 0.79
   2 !    6.6   0.0    0.0009         4     190     227 ..     232     267 ..     210     272 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.9e-05
  Hydrolase_4   5 avvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkva 102
                   v++l+HG+  +s ++ +l+  La   + ++a D  G+G ++   +  ++f    + la ++e++++  + +++ ++    G+ + l+++l++p+ ++
   KKY17379.1  30 PVILLLHGFPASSFQFRNLIPLLA-IKYRIIAPDLPGFGFTDMSSA--TNFIYTFANLANVIEEFVDALSLTKFSIYIFDYGAPTGLRLALKRPHAIQ 124
                  689*****************9775.68**************74444..77777777777777777777777777777777788888888888888888 PP

  Hydrolase_4 103 gli 105
                  ++i
   KKY17379.1 125 AII 127
                  777 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0009
  Hydrolase_4 190 itlPllllhGeaDkvvdpeasrelyerlgskdktlkly 227
                   ++Pll + G++D++  p +++++ ++l+  d +++l 
   KKY17379.1 232 SQVPLLAVWGKNDQLFIPPGAQAYKRELP--DAEVHLL 267
                  579********************999999..5666655 PP

>> EHN  Epoxide hydrolase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00048       2.2      89     108 .]      25      45 ..       4      45 .. 0.70
   2 ?    1.1   0.1      0.11   5.1e+02      35      62 ..     133     160 ..     111     179 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00048
         EHN  89 kpdaiP.llllhGWPgsflef 108
                  p+++P +lllhG+P s ++f
  KKY17379.1  25 GPASAPvILLLHGFPASSFQF 45 
                 34444428899*****99876 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.11
         EHN  35 eweeGvtkdelkelldyWkeeydWraee 62 
                  +eeG+     ++l+dyW ++ + +++ 
  KKY17379.1 133 VFEEGFGDVFWNDLRDYWSTDINAAENR 160
                 4567888888999*****9955444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2048.43
//
Query:       KKY17380.1  [L=112]
Description: hypothetical protein UCRPC4_g05624 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-23   82.7   2.8    2.7e-23   82.5   2.8    1.0  1  Glyco_hydro_28  Glycosyl hydrolases family 28


Domain annotation for each model (and alignments):
>> Glyco_hydro_28  Glycosyl hydrolases family 28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5   2.8   1.5e-27   2.7e-23     122     213 ..       2     102 ..       1     110 [. 0.95

  Alignments for each domain:
  == domain 1  score: 82.5 bits;  conditional E-value: 1.5e-27
  Glyco_hydro_28 122 sgkdltisditidasagd........hNtDgidvgsskgvtisntnikngDDciainsgsknisitnvtcggGHGlSiGSvggrsd.ntVknvtv 207
                     +g+d+ ++dit +a a++        +NtDg+d ++++++ ++n + + gDDcia+++ s n++++nvtc gG G+ iGS+g++ +   V+nv v
      KKY17380.1   2 NGTDMYFKDITCNATATKapygenwvQNTDGFDTMDANNIVLENFYYQGGDDCIALKPRSYNVKVSNVTCHGGNGIAIGSLGQYLEdSSVENVIV 96 
                     589*************999*****************************************************************8779******* PP

  Glyco_hydro_28 208 kdskvk 213
                     +  +++
      KKY17380.1  97 DSVNII 102
                     998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 758.85
//
Query:       KKY17381.1  [L=1050]
Description: putative fatty acid oxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-36  124.8   0.0    1.6e-25   89.7   0.0    3.4  2  An_peroxidase  Animal haem peroxidase
    7.7e-05   21.6   0.0    0.00015   20.6   0.0    1.5  2  p450           Cytochrome P450


Domain annotation for each model (and alignments):
>> An_peroxidase  Animal haem peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   5.2e-10   4.7e-06       1      90 [.      96     178 ..      96     184 .. 0.88
   2 !   89.7   0.0   1.8e-29   1.6e-25     150     505 ..     184     560 ..     180     563 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 5.2e-10
                    S--TTSTTSSTTSTTTT-TTEE-BBSS-----TCG.GTTS--....SHHHHHHHHCTB-SS---B-..SCBHHHHHHHHHHHCCC--B.EEE CS
  An_peroxidase   1 yrsidGscNnlknpewGsagtpfkRllpaaYedgvseprgssgselPsprevsnklladdeslpda..kltlllmqwgqfidhDltstpest 90 
                    yr++dGs Nn + p++G+ag+ ++R +++     v++p+      lP+p  +  +++a+++   ++   ++ +l     +i hDl+ t +  
     KKY17381.1  96 YRTADGSNNNPQYPSLGKAGSYYARTVTPM----VDQPAV-----LPDPGLIFDTIFARKTVAREHpcGISSVLFYLASIIIHDLFRTDDMD 178
                    9**************************997....778999.....9************66555443469*****************998765 PP

  == domain 2  score: 89.7 bits;  conditional E-value: 1.8e-29
                    S-SSSSSHHHH-SSHHHHHHHB-SSTT-B--EETT.CCCS-BSTTT-TT--S.-GCSB-SSSCCGCCBHHHHHHHHHHHHHHHHHHHHHHHH.... CS
  An_peroxidase 150 vTsflDasqvYGsseeearkLRsfkgGkLkvsskegkellPldeegedcaseeesecfkaGdsranenpgLlalhtlflReHNriAeeLkkl.... 241
                     +++lD   +YGsse+e++++R++k+G+Lk +  +   +                +++          pg+ al + f R HN++A++L+++    
     KKY17381.1 184 TSAYLDLAPLYGSSEKEQHSVRTMKDGLLKPD--A---FAEI-------------RLL-------AFPPGVCALLICFNRFHNYVAQQLATInegg 254
                    689***************************52..2...2222.............211.......2358999******************999999 PP

                    ................-TTS-HHHHHHHHHHHHHHHHHHHHHCTHHHHHCSS.HHHHHH.TT-H.HH.....S.T-STTS----BHHHHHTHCGGH CS
  An_peroxidase 242 ................nphwsdeelfqeARkiviAliqkItynewLpalLgk.enankyglllkgky.....k.gydesvnpsisneFataafrfg 314
                                      +  d++lfq+AR++++ l+ +I++++++  +L+  ++++++ l ++ +      + g  + +  ++s eF   ++r+ 
     KKY17381.1 255 rftkpegraddarfqaATQKYDNDLFQTARLVTCGLYVNIILHDYVRTILNLnRTTSSWTLDPRASVtelldEwGTPKGIGNEVSVEFNL-VYRW- 348
                    9999999999999998899999*****************************53677778888883233334322556799999999**77.***9. PP

                    HHHS-SEEEEE-.GCCS-EE......EEEEGGGCCCHHHHHTT.....H-...CHHHHHHHHCSB-B-STT-B-HHHHT...BBCSTTT..TT-B- CS
  An_peroxidase 315 hslvpdeierldenkeisee......qklplkdsffnpaelle.....gg...ldellrgllsqpaeavdqnlteelrn...klfkkse..esglD 391
                    hs ++   e ++ n+ ++e       q+l+l+++     e  +      g   + +l+r    +   a+  n+  + ++     f++++   +   
     KKY17381.1 349 HSAISARDEEWT-NNVYRELfggkdpQTLTLSEMQEGLREWAHglprdPGervFGDLIRTTSGSFDDAELVNILADSTEdiaGAFGPRNvpVVMKA 443
                    *****9998888.33332325556777888888865555442212122122235555555555555555444444444434434677644344456 PP

                    HHHHHHHHHHHCT--BHHHHHHHTT----SSCCCC-...SHHHHHHHHHHTTSCCCSBHHHHHHHS...-B-.TTB..SSCHHHHHHHHHHHHHHH CS
  An_peroxidase 392 laalniqRgRDhGlpsYnefrrlcglkkaksfedlteeideeeleklkevYgsvediDllvGglaE...kpl.pga..lvGptfaciiadqfrrlr 481
                    +  l + + R   +++ nefr +++l++ +sf ++++  d+++ ++l+++Yg ++ ++l+ G++aE   kp+ pg+    G t++  i+    +l 
     KKY17381.1 444 VECLGMEQARAWKVATLNEFRSFFKLEPYRSFAEISS--DKDVQDSLEALYGLPDYVELYPGLVAEdakKPMtPGSglCPGFTVSRTILADAVALT 537
                    66789*******************************8..8888899********************554344444455778887665555555666 PP

                    HT-CCGTTTHCHHHHHTHHHHCCH CS
  An_peroxidase 482 dgDRFfyenkkqpgvfteeqleei 505
                    +gDRF+++++++   +t+ +++++
     KKY17381.1 538 RGDRFYTTDYTP-ANLTSWGFNQV 560
                    6******99665.66666666665 PP

>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.42   3.8e+03     208     234 ..     686     712 ..     643     775 .. 0.64
   2 !   20.6   0.0   1.7e-08   0.00015     316     423 ..     885     986 ..     867     992 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.42
                 HHHHHHHHHHHHHHHHHHHHHHCHCHC CS
        p450 208 klkeavkklkdlldklieerretldsa 234
                  ++e++ +++ ++++lie+  ++l+++
  KKY17381.1 686 GMQEIRHYYETVTKQLIENSMKKLRNT 712
                 444445555555555555555555544 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.7e-08
                 HHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS.CEEETT....EEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGG CS
        p450 316 ddlqklpyldavikEtLRlhpvvplllpRevtk.dvvirg....ylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGaGp 409
                 dd  + + l+    E+ Rl +++  +l R+v     +i +     ++ kG++v vn  + + d++vf++P+  + +R  d+          ++  G G 
  KKY17381.1 885 DDPRDFEILKRYALEAYRLATPAQ-GLLRNVVVdKAEITDgtktLTVHKGDQVYVNFESAGLDESVFDDPKLIKLDRPYDA----------YIHHGYGT 972
                 56666777888888999*******.55565554279999999999*****************************9999998..........6667**** PP

                 GS-TTHHHHHHHHH CS
        p450 410 RnCiGerlArmelk 423
                 + C+G+++ ++ + 
  KKY17381.1 973 HECLGRPIVEVAMA 986
                 *******9988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1050 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.47
# Mc/sec: 6648.28
//
Query:       KKY17382.1  [L=381]
Description: putative lanthionine synthetase c-like protein 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-31  109.6   0.0    2.3e-31  108.6   0.0    1.4  1  LANC_like        Lanthionine synthetase C-like protein
  ------ inclusion threshold ------
       0.21   11.6   0.0       0.46   10.6   0.0    1.5  1  Leuk-A4-hydro_C  Leukotriene A4 hydrolase, C-terminal


Domain annotation for each model (and alignments):
>> LANC_like  Lanthionine synthetase C-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6   0.0   2.6e-35   2.3e-31       6     281 ..      45     318 ..      41     367 .. 0.88

  Alignments for each domain:
  == domain 1  score: 108.6 bits;  conditional E-value: 2.6e-35
                 STTTSHHHHHHHHHHHHHHHTHHHH.....HHHHHHHHHHHHHHHCCH.-S--STTTSHHHHHHHHHHHHHHCTHHHHHHHH...HHHHHCCHHHCTCH CS
   LANC_like   6 sLytGlaGiallllelykvtkneky.....lklahkylekikkelselglesisffsGaagiafalavaskklgnyqellka...ldsllelieeekle 96 
                  Ly+G+  + +l+ +l+k +++ k+     + +a++yl+++ +++++  +++ s  +G+a  +++ ++++  l++ + ++++   l+s+ e i ++ ++
  KKY17382.1  45 GLYSGIRSTSFLFCRLSKLYPELKVrglrlERIARSYLDAASPTAAD--SPDPSH-CGIANELLLNLTLKVLLNEGKIAIDNarnLCSYAETILRTNHP 140
                 69********************888899988999*************..999999.9******************999998612256667777777776 PP

                 T..GHSSTTTSHHHHHHHHHHHHHHH.-SGHHHHHHHHHHHHHHHCHHCCTTTCHSCHH-BTTBEB-STTTSHHHHHHHHHCCCHT.-HHHHHHHHHHH CS
   LANC_like  97 dekkdyDvisGlaGilsyllllneet.kieedllkqilkylvelgiksenqvswsplmyepegesnlGlAHGlsGialallalykgtksekllelikkl 194
                 d++ ++++++G+aG+l+ l  +++++ + +  + + + +++ +       ++s+ p    ++g+ +lG AHGl Gi++ +  +      ++  + ++k 
  KKY17382.1 141 DSS-SNEWLYGRAGYLYFLRTVYQHLqSVDGATARTVYETMRRVA----AGISAAPYPWTWHGKAYLGGAHGLVGIITQIVLSF-----PESASSMTKQ 229
                 665.8*********************8888888888888888888....9*************************666555544.....5888889999 PP

                 HHHHHHTS-TGTST--SBCTTSS-S--SSSSSHHHHHHHHHHHHHHHT..-HHHHHHHHHHHHHHHHH-TCCTCSSSTTSHHHHHHHHH CS
   LANC_like 195 lkylkslkfksegnWpdsisdknsylvaWChGapGillallkagkaln..eeelleeaeealevvlkkglllknpslCHGlsGnleill 281
                 l+ l+ l+   +gn+p+s+  + ++lv+ ChGapG++ +l  +   +   ++++  ++++a e v+++gll+knp+lCHG+sGn+ +l 
  KKY17382.1 230 LSGLLALQSTTSGNFPSSLPPHGDRLVQFCHGAPGFIASLSSLRPYFPdlQDRIDASLARARECVWERGLLTKNPCLCHGISGNAVVLG 318
                 999999999999*********************************99866678888999999***********************9885 PP

>> Leuk-A4-hydro_C  Leukotriene A4 hydrolase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   5.1e-05      0.46      66      98 ..     149     181 ..     120     189 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.1e-05
                      TTT---HHHHHHHHHHHHTT-HHHHHHHHHHHG CS
  Leuk-A4-hydro_C  66 lgsqGrmkfvrplYraLnkvdrdlAketFektk 98 
                       g+ G   f+r++Y+ L++vd + A+ ++e+ +
       KKY17382.1 149 YGRAGYLYFLRTVYQHLQSVDGATARTVYETMR 181
                      35689999*********************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2463.46
//
Query:       KKY17383.1  [L=465]
Description: putative mannitol 1-phosphate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-15   55.4   0.1    3.7e-14   52.8   0.1    2.2  1  FAD_binding_3  FAD binding domain
    2.6e-06   26.7   0.0    0.00038   19.6   0.0    2.2  2  SE             Squalene epoxidase
  ------ inclusion threshold ------
       0.06   13.6   0.4       0.16   12.3   0.4    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
       0.19   11.0   0.0       0.34   10.3   0.0    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
       0.29   10.3   0.4       0.63    9.2   0.1    1.7  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.1     1e-17   3.7e-14       3     348 ..      30     404 ..      28     405 .. 0.75

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 1e-17
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE................... CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealyne................... 79 
                    +V IVG G+aG+ la  L+ +G+  +l e     ++l+ +  ++++ ++ l+ +  +dr+++  +  ++++  ++ +                   
     KKY17383.1  30 SVGIVGMGLAGVALAIGLKHQGIHFHLYEAAPALHELSAGVAFSPTAIQALQLI--DDRLIKAYVLCATSNLDTRIStgiwgtvrygmdskspkys 123
                    799****************************************99988877643..3444333333332222222223444667888888887775 PP

                    ..CCCC.CEEEEEHHCHHCST-CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHH CS
  FAD_binding_3  80 ..lsdt.pkaradlelesspervtvypqteleriLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrkt 171
                      ++d   ++   l+++s+ e+v + +     + L e+ +  +  +  f++ ++sl ++ +gv+  + d +t  +     + ++G+DG rS++r+ 
     KKY17383.1 124 krIGDYiCDIDWCLHEDSGSEKVPLPGNVHRANFLNEAGKILPdDTKSFSKTLVSLDEEVNGVKLYFEDGTTAVH-----DAVIGCDGIRSKTRRL 214
                    5544446666666667888899999999999999*99999999888889999**9*9999999988888876666.....779***********97 PP

                    H.TGGEEEEEE..EEEEEEEEEEEEC-SCCCTTC....CEEEEECCTTEEEEEECCE.TEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHH..T CS
  FAD_binding_3 172 l.giefegeet..vyeagvldvlfdadlsdivep....lvlilsaesrgvmviPlen.tlerfyvqvearaekeersekfteeevkarlreiv..g 257
                    l g + ++ +   + e     ++++++  +i  +    +  +++   ++    P++  +  +++++ + ++e+   ++ + ++ + ++++     +
     KKY17383.1 215 LlGEDHPAASPqfTGEYAYRTLVPQQKAIEILGEdlasNAQLYAGYGGFWITYPVDHgNALNVLLIKQSGQEDWPYEKWVVPSSAQEIVNDFKdwD 310
                    6255555444400444555566666655556666688777777777777799*****777777777777766544455566666666665433004 PP

                    TSSCEE..EEEEEEEEEEEE.EEESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 258 ektldv..eieevsawtvaq.rvaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvdf 348
                    +k ld   ++e +++w   +  ++ +y +g +++ GDAaH++ P  + G  +a +Da+ +   L++v + +  ++ L+++++ rr++  ++v +
     KKY17383.1 311 PKILDLatSFEAKEKWAFFDvPLTASYARGCICVLGDAAHAMHPGLASGAGLAFEDAFVMSQLLGSVKQSKHIPSALEAFDRVRRPRTSRAVSE 404
                    44444433899999999765168999*************************************************************9999875 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0032        11       6      47 ..     202     244 ..     198     258 .. 0.79
   2 !   19.6   0.0   1.1e-07   0.00038     131     190 ..     341     397 ..     329     403 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0032
          SE   6 vvcDGifsklRkels.dnkvevtssfvGlvlknaelpkknkgh 47 
                 + cDGi sk R+ l  ++++  + +f G +   + +p+++  +
  KKY17383.1 202 IGCDGIRSKTRRLLLgEDHPAASPQFTGEYAYRTLVPQQKAIE 244
                 78***********998999999999999888887777665554 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 1.1e-07
          SE 131 GlillGDalnmRHPltggGmtvalnDivllskllkpledlsdeekvleelksfyvkRkel 190
                  +++lGDa    HP  ++G   a++D+ ++s+ll  +   ++++++ ++l+ f + R++ 
  KKY17383.1 341 CICVLGDAAHAMHPGLASGAGLAFEDAFVMSQLLGSV---KQSKHIPSALEAFDRVRRPR 397
                 479*******************************999...88999999999999888765 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   4.4e-05      0.16       1      29 [.      33      61 ..      33      63 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.4e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   IvG Gl+G ++A  L+ +g++ +l+e+++
     KKY17383.1 33 IVGMGLAGVALAIGLKHQGIHFHLYEAAP 61
                   9*************************987 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   9.4e-05      0.34      28      70 ..      20      62 ..       9      80 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.4e-05
                  CGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C 28 allgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskk 70
                  +  ++++++  vGi+G+G  G a+a  lk  g++   y+  + 
    KKY17383.1 20 DRASSSIRNISVGIVGMGLAGVALAIGLKHQGIHFHLYEAAPA 62
                  66778999**************************999988765 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00018      0.63       3      33 ..      31      61 ..      29     104 .. 0.86
   2 ?   -2.4   0.0       0.6   2.2e+03     215     242 ..     185     212 ..     173     217 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00018
                 EEEE--SHHHHHHHHHHHHHTS-EEEEETTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  3 vvviGgGpAGlaaaltlaqagakvtlveleg 33
                 v ++G G AG+a+a+ l+++g+  +l+e+  
   KKY17383.1 31 VGIVGMGLAGVALAIGLKHQGIHFHLYEAAP 61
                 779********************99997443 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.6
                  EEEEEETTSCEEEESEEEE-S-EEES-H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 215 klevvledgeeidadlvvvavGvrpste 242
                   +++  edg++   d v+ + G+r +t+
   KKY17383.1 185 GVKLYFEDGTTAVHDAVIGCDGIRSKTR 212
                  5678899999999999999999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3063.67
//
Query:       KKY17384.1  [L=698]
Description: putative serine threonine-protein kinase chk2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-77  258.9   0.0    7.9e-77  258.2   0.0    1.4  1  Pkinase          Protein kinase domain
    4.9e-38  130.9   0.0    7.1e-38  130.4   0.0    1.2  1  Pkinase_Tyr      Protein tyrosine kinase
    1.8e-17   63.4   1.0    3.6e-17   62.5   0.1    2.0  2  FHA              FHA domain
    1.4e-10   40.9   0.1      3e-08   33.3   0.0    2.2  2  Kinase-like      Kinase-like
    2.3e-07   29.9   0.0    5.6e-07   28.7   0.0    1.6  1  Pkinase_fungal   Fungal protein kinase
    8.8e-07   29.2   0.0    2.7e-06   27.6   0.0    1.7  2  Yop-YscD_cpl     Inner membrane component of T3SS, cytoplasmi
  ------ inclusion threshold ------
      0.013   14.8   0.0      0.026   13.9   0.0    1.4  1  Kdo              Lipopolysaccharide kinase (Kdo/WaaP) family
      0.072   12.0   0.0       0.11   11.4   0.0    1.2  1  Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
      0.085   12.8   0.1       0.45   10.4   0.1    2.0  1  APH              Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.2   0.0     4e-80   7.9e-77       1     264 []     276     541 ..     276     541 .. 0.94

  Alignments for each domain:
  == domain 1  score: 258.2 bits;  conditional E-value: 4e-80
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--H CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke..kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslse 97 
                 y+ l++lG+G f++Vy ++ek+tg ++AvKk+++++ +++k   + +++Ei++l +++hpn++ l+++f e d +ylvle++++gel++++  k++l+e
  KKY17384.1 276 YRLLQQLGRGHFATVYLCIEKATGFKFAVKKFERRQGDSQKSqtEGLQQEIAVLMSVSHPNVLCLKDTFDEADGVYLVLELASEGELFNWIVLKQKLTE 374
                 67899*****************************999988887899**********************************************99***** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH...TTSCBSHHHHHHHHHHHHHHHHH CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelessskltsfvgtseYlAPEvl...keneyskkvDvWslGvilyellt 192
                 +e++k++ q+++g++ylH+++i+HrD+KpeNiL+  ++  +K++DFGlak + ++s +t+ +gt+ Y+APE+l   ++++y+++vDvWslGv+ly  l+
  KKY17384.1 375 DETRKVFIQLFQGIKYLHERNIVHRDIKPENILLTdKNLSVKLADFGLAKIIGEESFTTTLCGTPSYVAPEILensRHRKYTRAVDVWSLGVVLYICLC 473
                 ***********************************56666*********************************99889********************* PP

                 SS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 193 gkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 g ppfs+e  + ++   l q    +  +g  +  +p ++++ + a+dl++k+l++d +kR+t++e+l+hp++
  KKY17384.1 474 GFPPFSDELYTPENPYTLSQ----QIKMGRFDYPSPYWDSVGDPALDLIDKMLTVDVEKRITVDECLEHPWI 541
                 ******66666655555555....2234688999*************************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   0.0   3.5e-41   7.1e-38       3     256 ..     278     536 ..     276     538 .. 0.78

  Alignments for each domain:
  == domain 1  score: 130.4 bits;  conditional E-value: 3.5e-41
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST...TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlke...eateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  l ++lG+G+f++V+ +  k     +  k avK++++   +++++++e l +e++++++++hpn++ l     +++ +++v+e++++G+L + +  k  
   KKY17384.1 278 LLQQLGRGHFATVYLCIEK----ATGFKFAVKKFERrqgDSQKSQTEGLQQEIAVLMSVSHPNVLCLKDTFDEADGVYLVLELASEGELFNWIVLK-- 369
                  6799*************99....999********6522245666688999*******************************************998.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETT.EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE...EEHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenk.vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk...ftsksDvWsf 191
                  +klt +++ ++ +q+ +G++yL+++++vHrd+   N+Ll++++  vk++DfGLa+ i   +e   +++      ++apE+l++++   +t + DvWs 
   KKY17384.1 370 QKLTEDETRKVFIQLFQGIKYLHERNIVHRDIKPENILLTDKNlSVKLADFGLAKII--GEES-FTTTLCGTPSYVAPEILENSRhrkYTRAVDVWSL 464
                  9**************************************986659************..3333.33444555689*****99876677********** PP

                  HHHHHHHHTTSSGT.....TTTSHHHHHHHHHHTTEES-BB....TTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 192 GvllwEiftlgesp.....ypglkneevleklkegkrlekp....ekcpeelyelmkkcweedpeeRptfselv 256
                  Gv+l+ i+  g  p     y+  ++ ++ +++k   r + p    +++ +   +l+ k ++ d e+R t  e++
   KKY17384.1 465 GVVLY-ICLCGFPPfsdelYTPENPYTLSQQIK-MGRFDYPspywDSVGDPALDLIDKMLTVDVEKRITVDECL 536
                  *****.555588883333333333333444443.3344444001134444456777777777777777777765 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.1   1.8e-20   3.6e-17       1      67 [.     184     251 ..     184     252 .. 0.90
   2 ?   -2.7   0.1       4.1   8.1e+03      47      64 ..     580     595 ..     577     595 .. 0.85

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 1.8e-20
                 EEEESSTTSSEETTSTTSTTTEEEEEEETT..CEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEE CS
         FHA   1 vtiGRssdcdivlddpsiSrkHalikfdkg..sgkvyleDlgSknGtfvNgqrigkgepveLksgdvie 67 
                 + iGR+++cd++ld p++S +H+li+++    +    leDl S+nGtfvN+  +g++++ eL++gd+i 
  KKY17384.1 184 YLIGRHPECDVILDMPTVSNRHCLIFNEHRngHAVSILEDL-SSNGTFVNEALVGRNKRRELHDGDEIA 251
                 78***********************5554434788899999.9************************96 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.1
                 ETTEEESTTSEEEE-TTE CS
         FHA  47 vNgqrigkgepveLksgd 64 
                 +N++ri++   v+L+ +d
  KKY17384.1 580 INNVRITQ--VVDLRRDD 595
                 899***99..99998876 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.1    0.0048       9.5       5      62 ..     267     325 ..     264     334 .. 0.86
   2 !   33.3   0.0   1.5e-11     3e-08     143     256 ..     375     484 ..     358     529 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0048
  Kinase-like   5 selgerertlvrgellkkgdrsvvfevkdqetgeplavkvfllps.easkkdlerlkeq 62 
                  s+ +++ +++   + l++g +  v++  +++tg ++avk f   + +  k++ e l+++
   KKY17384.1 267 SDQNAFRQQYRLLQQLGRGHFATVYLCIEKATGFKFAVKKFERRQgDSQKSQTEGLQQE 325
                  788999************************************99966666667766654 PP

  == domain 2  score: 33.3 bits;  conditional E-value: 1.5e-11
  Kinase-like 143 tiarlllTlqlirlaanLqakglvhgkftvdnlll.dekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlG 237
                  +  r++  +ql + + +L+++ +vh +++++n+ll d++  ++l +f+     g++    + +   ++  pE+l +       ++ k+t ++d+W lG
   KKY17384.1 375 DETRKVF-IQLFQGIKYLHERNIVHRDIKPENILLtDKNLSVKLADFGLAKIIGEESFTTTLCgtPSYVAPEILEN------SRHRKYTRAVDVWSLG 465
                  4555555.78999999*****************99456789*******9999999998777776666888887766......36679*********** PP

  Kinase-like 238 lviyriwclklPltlatee 256
                  +v y   c   P+      
   KKY17384.1 466 VVLYICLCGFPPFSDELYT 484
                  ********99998765444 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   2.8e-10   5.6e-07     309     393 ..     378     454 ..     367     473 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 2.8e-10
  Pkinase_fungal 309 lealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsy 393
                      +++++  +g + L+ + +i+HrDi  +Nil+td+    + +  L+D+ lak +++   es   +  GT+ ++a e+l+++ H+ 
      KKY17384.1 378 RKVFIQLFQGIKYLH-ERNIVHRDIKPENILLTDK----NLSVKLADFGLAKIIGE---ESFTTTLCGTPSYVAPEILENSRHRK 454
                     5678888899999**.*****************54....67899***********7...5555789*************999975 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.3e-09   2.7e-06      16      81 ..     181     252 ..     176     261 .. 0.83
   2 ?   -3.4   0.0       6.2   1.2e+04      23      37 ..     399     414 ..     392     418 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.3e-09
                   TEEEEEES-TT-SEE---TTS-TT-EEE...EEETTEEEEEE-CESS--EETTEE-SECC...--TTSEEEE CS
  Yop-YscD_cpl  16 egevviGsdedcDivLsDkevsrkhlkL...eveeesvrledlgsrngllvngerveele...lrpgdvlel 81 
                   +g ++iG++++cD++L+ ++vs++h+ +    ++   v++ +  s ng++vn+  v + +   l++gd++++
    KKY17384.1 181 SGGYLIGRHPECDVILDMPTVSNRHCLIfneHRNGHAVSILEDLSSNGTFVNEALVGRNKrreLHDGDEIAV 252
                   5679**********************99433345677999999**********9887333345999999875 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.2
                   S-TT.-SEE---TTS- CS
  Yop-YscD_cpl  23 sded.cDivLsDkevs 37 
                   +d +  +i+L+Dk++s
    KKY17384.1 399 RDIKpENILLTDKNLS 414
                   5555578999999887 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.3e-05     0.026     108     166 ..     365     420 ..     350     426 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.3e-05
         Kdo 108 llakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                 ++   ++l e  +r+ + ++ + i+ lh++++ H+d+ + nill  ++   + + l D+
  KKY17384.1 365 WIVLKQKLTEDETRKVFIQLFQGIKYLHERNIVHRDIKPENILLTDKN---LSVKLADF 420
                 44444456778888899999999*********************9886...77777776 PP

>> Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.7e-05      0.11     296     332 ..     392     429 ..     374     438 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.7e-05
  Pox_ser-thr_kin 296 dcenflhvDlkPdniLifdskekliik.vkerkyvfke 332
                        +n +h D+kP+niL+ d +  +++  ++ +k++ +e
       KKY17384.1 392 HERNIVHRDIKPENILLTDKNLSVKLAdFGLAKIIGEE 429
                      35799************998766654314445555555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00023      0.45     163     197 ..     391     424 ..     249     426 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00023
                 SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 163 elptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                   ++ ++H+D++p N+l++ d++  + + Df++a+
  KKY17384.1 391 LHERNIVHRDIKPENILLT-DKNLSVKLADFGLAK 424
                 567889*************.444444677777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.48
# Mc/sec: 4370.47
//
Query:       KKY17385.1  [L=892]
Description: putative aminopeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-86  287.9   0.4    9.1e-86  286.9   0.4    1.5  1  Peptidase_M1    Peptidase family M1 domain
    3.3e-83  279.8   1.5    3.3e-82  276.5   0.1    2.5  3  ERAP1_C         ERAP1-like C-terminal domain
    2.5e-54  184.3   3.7    3.6e-54  183.8   2.0    1.9  2  Peptidase_M1_N  Peptidase M1 N-terminal domain
  ------ inclusion threshold ------
      0.056   13.4   0.0       0.14   12.2   0.0    1.6  1  DUF2808         Protein of unknown function (DUF2808)
       0.12   11.6   0.1       0.31   10.3   0.0    1.6  2  Phage_CRI       Phage replication protein CRI


Domain annotation for each model (and alignments):
>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.9   0.4   2.5e-89   9.1e-86       1     218 []     253     469 ..     253     469 .. 0.99

  Alignments for each domain:
  == domain 1  score: 286.9 bits;  conditional E-value: 2.5e-89
                   HHHHHHHHHHHHHHHHHTS--SSSEEEEEEESSTTSSEEEETTEEEEEGGGC-SSTTTS-HHHHHHHHHHHHHHHHHHHBTTTEEESSGGGGHHHHH CS
  Peptidase_M1   1 yalevtkkllefleeyfkvpYplpkldlvalpdfsagAMEnwglityreelllvdpenssesdkrsvaeviaHElaHqWfGnlVtmkwWddlwLnEG 97 
                   ++l+ ++k+l f+e+ f  +Yplpk+d+va+pdfsagAMEnwgl+tyr   ll+d e+s++ +k++vaev+ HElaHqWfGnlVtm+wW+ lwLnEG
    KKY17385.1 253 FSLDLAAKTLPFYEKAFAADYPLPKMDMVAIPDFSAGAMENWGLVTYRVVDLLID-ESSTAGTKQRVAEVVQHELAHQWFGNLVTMSWWEGLWLNEG 348
                   789****************************************************.889999*********************************** PP

                   HHHHHHHHHHHHHSCCCHCHHHHHHHCHHHHHHHHTSTTHHHSSGG-GSHHHHHHTSSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHCTTEEE CS
  Peptidase_M1  98 fatyleylildklepewevseqllleeveealsedaldeshpitqevekpseidevFdsiaYeKGasllrmlekllgeevFqkglksYlkefkykna 194
                   fat+++++++++++p+w+v+e+++++++++als d+l++shp+++ v++++e+d++Fdsi+Y+KG+s+lrm++k+lge+vF +g+++Y+k+++y+n+
    KKY17385.1 349 FATWMSWYSCNEFYPDWKVWETYIIDNLQSALSLDSLRSSHPVEVPVKRADEVDQIFDSISYAKGSSVLRMISKYLGEDVFIEGVRKYVKKHAYGNT 445
                   ************************************************************************************************* PP

                   -HHHHHHHHHHCCCSCHHTHHHHH CS
  Peptidase_M1 195 etedlwdaleealnkdisevmdtw 218
                   et+dlwdal+ a++k +s+vm  w
    KKY17385.1 446 ETTDLWDALSSASGKPVSDVMGVW 469
                   *********************988 PP

>> ERAP1_C  ERAP1-like C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1     0.047   1.7e+02       4      17 ..     122     135 ..     121     145 .. 0.89
   2 ?   -2.5   0.0      0.81   2.9e+03     191     220 ..     145     174 ..     140     188 .. 0.74
   3 !  276.5   0.1   9.3e-86   3.3e-82       1     314 [.     543     861 ..     543     862 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.047
                 ESGGG-SSSEEEE- CS
     ERAP1_C   4 lNdddtGyyrVnYd 17 
                 lNdd+ G+yr +Y 
  KKY17385.1 122 LNDDMAGFYRSSYK 135
                 8**********995 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.81
                 C-SSHHHHHHHHHHHCC-S-HHHHHH.HHHH CS
     ERAP1_C 191 dtsapsekeaalralaatpdpeller.llnf 220
                  t++  e + a ra  ++ +p+l+++ +  +
  KKY17385.1 145 ATTQ-MEATDARRAFPCFDEPALKAEfTVTL 174
                 4555.89999**************9944444 PP

  == domain 3  score: 276.5 bits;  conditional E-value: 9.3e-86
                 -EEESGGG-SSSEEEE-HHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHGGG.GGGG--SHHHHHHHHHHHHHHHHHHT..TSTTHH CS
     ERAP1_C   1 lvllNdddtGyyrVnYdeeslaalleqllskklspldRaglisdafalaragelsaadlldlllgylanEtdylvwsqalsqlatlkslls..adplya 97 
                 +++lN+d+ G yr++Y++e+la+l+e+++ ++ls++dRag+i+da ala +g ++++ +l+ll+++  +E +y+vw ++l+++at++  ++  + ++++
  KKY17385.1 543 FYKLNADHDGLYRTSYSPERLAKLGEAAKAGLLSVEDRAGMIADAGALAASGFQKTSGVLSLLKSF-DSEAQYVVWGEILTRIATVRGAWMfeQKETKD 640
                 79************************999*************************************.7******************999987456699* PP

                 HHHHHHHHHHHHHHHHHHHT...TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHCSTT.-S-HHHHHHHHHHHHHHS.-HHHHHHHHHHH.HC CS
     ERAP1_C  98 alkaflrklleplaeklgwe..pgeshldaqlrslllsaacaagdpevveearklfkawlegdd.lippdlrwavycalaang.geaewdallery.kd 191
                 alk+f+r+l +p a++lgw+  ++e + + q++s++++ a++agdp+ v++a+++f+++ +g+d +i+p+++ av+++++ang ge+ +da+++ y + 
  KKY17385.1 641 ALKSFVRDLTSPKAHELGWDfsKDEGNIKEQFKSMMFGSAGMAGDPSIVAAAKEMFAEFTKGNDkAIHPNIKAAVFSIVLANGgGEQAFDAIWKSYlNA 739
                 *******************5537799*********************************9998855****************55************445 PP

                 -SSHHHHHHHHHHHCC-S-HHHHHHHHHHCTTT..S-GGGHHHHHHHH.HSTTHHHHHHHHHHHCHCCHHHHTSS.TSCHHHHHHHHHTT--SHHHHHH CS
     ERAP1_C 192 tsapsekeaalralaatpdpellerllnfvlesdevrnqdlrallaglannpegrellwefvkenwdalakrwsg.geildrivkgllpgftseeelae 289
                 ++a  +k++alr ++ ++d++l++r+l+++l +++v++qdl+ ++++++++  g  + w+++k+nw +++kr+s+ g++l+ +++++++++++ee++++
  KKY17385.1 740 PTA-GQKDQALRVIGGVEDAALIKRTLEYAL-GPDVKTQDLYKPISSMRSTSTGISIRWQWMKDNWTEIHKRLSTaGTLLGGVLQMTASSLCTEEQAQD 836
                 666.88************************9.99**************888**********************9735599******************* PP

                 HHHHHCHTT--GGGHHHHHHHHHHH CS
     ERAP1_C 290 ieaffadkdtpglrrtlkqaletvr 314
                 +e+ff+dkd +g++ +l+q+l+++r
  KKY17385.1 837 VEDFFKDKDNKGYDMSLAQSLDAIR 861
                 ***********************98 PP

>> Peptidase_M1_N  Peptidase M1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.8   2.0     1e-57   3.6e-54       2     186 .]      29     218 ..      28     218 .. 0.94
   2 ?   -0.6   0.0      0.36   1.3e+03      83     109 ..     533     559 ..     485     564 .. 0.80

  Alignments for each domain:
  == domain 1  score: 183.8 bits;  conditional E-value: 1e-57
                     EEEEEEEEEEETTTTEEEEEEEEEEEESS-ECEEEEEESSEEEECEEEEECTTCTCEEEEEEEECTTTTCEEEEECCEEETTCEEEEEEEEEEE- CS
  Peptidase_M1_N   2 pehYdldlkidlkektfkGsvtitlqlkeatseivldakdlkiksvslsaevksesvkidfkieqkdeelltiklkeslqqtskytLeieyegel 96 
                     p+hYdl l+++++++t++G+vti+l+++ +t++i+l++kd++i+s  ++++ ++ s++ d +++q+++   t+k+++  ++ +k++L+ +++g l
      KKY17385.1  29 PRHYDLVLEPNFETFTYEGTVTIDLDVADDTTSIALNTKDIEIHSTAVFSDGATISSSPDVSYNQSTQT-TTVKFDKVISKGRKAQLKHTFSGTL 122
                     99******************************************9999999999999999998888877.99*********************** PP

                     BSSSSEEEEEEEEE.TSCEEEEEEEE-TTTTGGGTS-B--STTSEBEEEEEEEEETTSEEEESSECCCEEEET....TCEE.EEEEEEEESBEGG CS
  Peptidase_M1_N  97 ndklaGlykstYtd.kgekkvvvvTqfeatdARsafPCfDePsvKAtftisikapkeetalSnmpeeesekle....ngqk.iteFeqtpkmstY 185
                     nd++aG+y+s+Y+  +gekk++++Tq+eatdAR+afPCfDeP+ KA+ft++++a+k+ t lSnm++  +++ +     g+k  ++F+++pkmstY
      KKY17385.1 123 NDDMAGFYRSSYKGpNGEKKYIATTQMEATDARRAFPCFDEPALKAEFTVTLIADKKLTCLSNMDVAYEKEVDskmsGGKKkAVTFNRSPKMSTY 217
                     ****************************************************************998888777667644555************* PP

                     G CS
  Peptidase_M1_N 186 L 186
                     L
      KKY17385.1 218 L 218
                     9 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.36
                     TCEEEEEEEEEEE-BSSSSEEEEEEEE CS
  Peptidase_M1_N  83 tskytLeieyegelndklaGlykstYt 109
                     +s+y+L++    +ln +  Gly+++Y 
      KKY17385.1 533 SSNYQLDSLDFYKLNADHDGLYRTSYS 559
                     67888876544679**********996 PP

>> DUF2808  Protein of unknown function (DUF2808)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.8e-05      0.14      43     121 ..      50     131 ..      25     141 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.8e-05
     DUF2808  43 kltisqpdfvedikfdlkkveafvgttrnkgeklpleevv.wdkenrtieitfdePippgktvtv..vlknvrNPrfgGtYl 121
                  +++++ d ++ i +++k++e+      ++g +++ +  v  +++++t +++fd+ i+ g++ ++   ++   N +++G Y 
  KKY17385.1  50 TIDLDVADDTTSIALNTKDIEIHSTAVFSDGATISSSPDVsYNQSTQTTTVKFDKVISKGRKAQLkhTFSGTLNDDMAGFYR 131
                 45556666667799999999999988999999999887778********************888833588888888888885 PP

>> Phage_CRI  Phage replication protein CRI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.4     5e+03     170     190 ..      91     114 ..      52     116 .. 0.61
   2 ?   10.3   0.0   8.7e-05      0.31      38      76 ..     760     798 ..     746     813 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.4
   Phage_CRI 170 trqldkesTlyfnkn...srrwsL 190
                  +q++  +T+ f k    +r+ +L
  KKY17385.1  91 YNQSTQTTTVKFDKViskGRKAQL 114
                 344455566666665555555555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 8.7e-05
   Phage_CRI  38 ladgevewesdkklrvegLkhpweslPShesgiavkvld 76 
                 l ++++e++   ++++++L+ p +s+ S  +gi+++ + 
  KKY17385.1 760 LIKRTLEYALGPDVKTQDLYKPISSMRSTSTGISIRWQW 798
                 67899*******************************874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (892 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 5673.39
//
Query:       KKY17386.1  [L=523]
Description: putative mfs sugar transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-96  324.2  26.6    1.6e-96  323.9  26.6    1.0  1  Sugar_tr  Sugar (and other) transporter
    2.1e-16   59.8  41.1    4.1e-14   52.3  15.4    2.1  2  MFS_1     Major Facilitator Superfamily
     0.0032   17.3   0.6      0.011   15.5   0.6    1.9  1  Tail_VII  Inovirus G7P protein
  ------ inclusion threshold ------
      0.039   14.2   0.2      0.039   14.2   0.2    3.2  3  DUF2530   Protein of unknown function (DUF2530)
       0.13   11.7   0.0       0.13   11.7   0.0    3.3  4  SfLAP     Sap, sulfolipid-1-addressing protein


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.9  26.6  4.5e-100   1.6e-96       3     452 .]      16     475 ..      14     475 .. 0.94

  Alignments for each domain:
  == domain 1  score: 323.9 bits;  conditional E-value: 4.5e-100
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTST.T--SHHHHHH......HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TT CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfg.lsksksskee...ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaak 97 
                 lv+a + +lfgY+ + +g+ l+l + +  f   ++ ++s ++    ++ +gl+v+ f++Gai+Gs+  +++gd+fGR+k++  aa++++ig +l+  + 
  KKY17386.1  16 LVVAPSFVLFGYNQAGVGGLLSLDSWVETFPeIDTVNTSGAKeshNATIQGLVVATFVLGAIAGSFSCMYIGDVFGRRKCIFGAALCTLIGEILCTSSF 114
                 56666669****************9887776333333333335678899************************************************** PP

                 TTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-...TTHHHHHHHCCHHHHHHHHHHGGGS-- CS
    Sugar_tr  98 gknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn...adgwrillglqlvpallllilllflPE 193
                    ++ +++vgR ++G+g+G+ s++vP++++E +p++ Rg+ v+l  l++tfG  + +++++g+ ++++   ++ wr +lg+ ++++l+ ++++++lPE
  KKY17386.1 115 ---HLAQFVVGRSIIGFGIGILSATVPVWQAECSPAANRGKHVVLDGLFMTFGYTLESWINFGFYQIKSgsgSVSWRAPLGIPIAISLIPMAAIFLLPE 210
                 ...*************************************************************88888899*************************** PP

                 -HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH........HTTHHHHSH.....HHHHHHHHHHHHHHTTHHHHHHHTTTHHH.HSS- CS
    Sugar_tr 194 SPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeee...kaswkellsskt..vrqrlligvvlqifqqltGinaimyysptife.nlgl 286
                 SPr+l+++ + eea+++l+ l++ + +d  l++e++ ++++ +e    k+s++e++s+ +   ++r+ ++++lq+ qq++G n i  y++ +f+ +lg+
  KKY17386.1 211 SPRWLLKVSRVEEATATLSALKDLPIDDSTLNAEIEGIRYALNEGgpsKISIREMFSMGEekLFYRFCLCILLQFYQQMSGSNLISVYASILFQqKLGM 309
                 *****************************************99889************7799******************************9736999 PP

                 THH..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTT CS
    Sugar_tr 287 sks..llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsv 383
                   +   + t+++ +++f+++fva+f++drfGRR l++++++gm  c++ l+ v   +++ +k+a+i++ +fi+++ ++  +g+ +  +++++E++p ++
  KKY17386.1 310 GSEvsRILTGGTLTWKFLSSFVAFFTIDRFGRRALFMFSGVGMGSCMLALA-VGTSFPEDNKSAAIASAFFIFMYNFFVPIGFLGANFLYCAEVAPVKL 407
                 99988999******************************************9.66666666689************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 384 Rskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 R + ++i++a +wl+nf++ + +p++ ++ig +++flvf+ +     + v++ +pet g++le+i+++f
  KKY17386.1 408 RVSMASISTANHWLWNFVVIMATPVAISSIG-WKYFLVFMTISFCIPLSVYLYFPETMGQSLEQIDAVF 475
                 *******************************.**********************************997 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3  15.4   1.1e-17   4.1e-14      29     242 ..      60     314 ..      18     323 .. 0.77
   2 !   14.5  21.5   3.5e-06     0.013       3     178 ..     282     466 ..     277     493 .. 0.71

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 1.1e-17
       MFS_1  29 ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllll.fasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigl 125
                  +++ +gl+++++ lga+++s+  ++++d fGrr++++ ++l++++g +l+ + f+  l  ++v+r + G+g g+l +++ ++ a+ +p  +rg+ + l
  KKY17386.1  60 HNATIQGLVVATFVLGAIAGSFSCMYIGDVFGRRKCIFGAALCTLIGeILCTSsFH--LAQFVVGRSIIGFGIGILSATVPVWQAECSPAANRGKHVVL 156
                 368889*****************************************777777553..336************************************** PP

       MFS_1 126 lsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee............................kg 190
                  ++++ +G+ l   +   +++  +      Wra+  i  ++sl+ +  +++llpe+p+   ++s +ee                             + 
  KKY17386.1 157 DGLFMTFGYTLESWINFGFYQIKSgsgsvsWRAPLGIPIAISLIPMA-AIFLLPESPRWLLKVSRVEEAtatlsalkdlpiddstlnaeiegiryalN- 253
                 *********9999999999955557999****************866.56888888888888888888799999999999998888888888888742. PP

       MFS_1 191 tgpaplvpawkallkdp...vlw....illialllfffgfsglltllplylqevlgls...g 242
                  g+ + ++ ++++++      ++    ++l+ ++  + g ++++++  +++q+ lg++   +
  KKY17386.1 254 EGGPSKIS-IREMFSMGeekLFYrfclCILLQFYQQMSGSNLISVYASILFQQKLGMGsevS 314
                 33333333.35555544443222323345555555566666699999999999999985441 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 3.5e-06
       MFS_1   3 laaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll....fa...sslw.lllvlr 92 
                 l++f   ++ s+l++++ + + ++ lg+   +  +l+++     +++s+++ + +drfGrr +++++ +++++++l+l+    f+    s   + +++ 
  KKY17386.1 282 LLQFYQQMSGSNLISVYASiLFQQKLGMGSEVSRILTGGTLTWKFLSSFVAFFTIDRFGRRALFMFSGVGMGSCMLALAvgtsFPednKSAAiASAFFI 380
                 5666667777777777777799*****88888888888888889******************************6666634433366544444688888 PP

       MFS_1  93 vlqGlgagalfpagaaliadwfpkeergraigllsagfslGa.ilgpllggllasslgWravfyilaivsllafvlfllllpeeppe 178
                 ++  ++  ++f +++ l  + +++ +    ++ +s+++      +  ++ ++ +ss+gW +  +++  +s+   + ++l++pe+  +
  KKY17386.1 381 FMYNFFVPIGFLGANFLYCAEVAPVKLRVSMASISTANHWLWnFVVIMATPVAISSIGWKYF-LVFMTISFCIPLSVYLYFPETMGQ 466
                 899999977777777766666666566666666666666555255566666777999**965.555555555566778999887555 PP

>> Tail_VII  Inovirus G7P protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.6   3.2e-06     0.011      11      35 ..      62      85 ..      60      86 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.2e-06
    Tail_VII 11 sticiglVlvWFvLGrlAGsvAGmF 35
                +ti+ glV+  FvLG +AGs   m+
  KKY17386.1 62 ATIQ-GLVVATFVLGAIAGSFSCMY 85
                7787.677777*********88886 PP

>> DUF2530  Protein of unknown function (DUF2530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   1.1e-05     0.039      25      77 .]     104     159 ..      89     159 .. 0.76
   2 ?    3.8   0.4     0.019        68      12      54 ..     312     355 ..     309     363 .. 0.76
   3 ?   -2.2   0.4       1.4   5.1e+03      22      37 ..     418     433 ..     403     458 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
     DUF2530  25 lvalvvllvvgdaleswlpvclaGlvvGllGlaiflwQRr...AaRrGsrgAqqGL 77 
                 l++ ++   + +  + ++  +++G+++G+l  ++ +wQ +   Aa rG+  + +GL
  KKY17386.1 104 LIGEILCTSSFHLAQFVVGRSIIGFGIGILSATVPVWQAEcspAANRGKHVVLDGL 159
                 455555554545556688899*****************86555999**99988887 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.019
     DUF2530  12 dprpvivvgtllW.lvalvvllvvgdaleswlpvclaGlvvGll 54 
                 ++  ++  gtl W +++  v+++++d++ +   +   G+++G  
  KKY17386.1 312 EVSRILTGGTLTWkFLSSFVAFFTIDRFGRRALFMFSGVGMGSC 355
                 56778889999996466777777889999999999999999864 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.4
     DUF2530  22 llWlvalvvllvvgda 37 
                   Wl  +vv++++  a
  KKY17386.1 418 NHWLWNFVVIMATPVA 433
                 4677777777766444 PP

>> SfLAP  Sap, sulfolipid-1-addressing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.53   1.9e+03     119     158 ..      31      74 ..      29      86 .. 0.52
   2 ?   -1.6   0.3      0.43   1.5e+03      64      88 ..     117     141 ..      95     230 .. 0.62
   3 ?   -0.4   1.1      0.18   6.6e+02     139     166 ..     407     434 ..     349     439 .. 0.63
   4 ?   11.7   0.0   3.6e-05      0.13     155     193 ..     441     479 ..     429     485 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.53
       SfLAP 119 lvlgllsakplllylaalaaigasgas....vgtqvvalvvFvv 158
                 +v glls + +++ +  + ++++sga+    ++ q ++++ Fv+
  KKY17386.1  31 GVGGLLSLDSWVETFPEIDTVNTSGAKeshnATIQGLVVATFVL 74 
                 56666666666666666666666665411112223333333433 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.43
       SfLAP  64 pssaikalqivlGvlllllaaveav 88 
                 +++++++  i+ G+++l   + ++ 
  KKY17386.1 117 AQFVVGRSIIGFGIGILSATVPVWQ 141
                 5666666666666666655554443 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.18
       SfLAP 139 igasgasvgtqvvalvvFvvvalavvei 166
                 +  s as++t+   l  Fvv+++++v+i
  KKY17386.1 407 LRVSMASISTANHWLWNFVVIMATPVAI 434
                 3345556666666666677777777776 PP

  == domain 4  score: 11.7 bits;  conditional E-value: 3.6e-05
       SfLAP 155 vFvvvalavveipllaylvapertqavlerlkdwlrsnr 193
                 +F v ++ ++ ipl +yl +pe++ + le++ ++ r + 
  KKY17386.1 441 YFLVFMTISFCIPLSVYLYFPETMGQSLEQIDAVFRDHD 479
                 79*****************************99999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 3141.47
//
Query:       KKY17387.1  [L=1893]
Description: putative phosphatidylinositol 4-kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-38  133.3   0.0    2.3e-36  125.9   0.0    2.4  1  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
    7.8e-24   84.1   0.1    5.7e-23   81.3   0.0    2.2  2  PI3Ka           Phosphoinositide 3-kinase family, accessory d
  ------ inclusion threshold ------
       0.12   12.7   1.3         23    5.4   0.0    3.5  3  His_kinase      Histidine kinase


Domain annotation for each model (and alignments):
>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.9   0.0   3.8e-40   2.3e-36       2     248 ..    1636    1840 ..    1635    1841 .. 0.96

  Alignments for each domain:
  == domain 1  score: 125.9 bits;  conditional E-value: 3.8e-40
                      EEEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHHHHHHCHC CS
  PI3_PI4_kinase    2 sagiykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasveslrvaldk 94  
                       + i+kvgdd+rqd l +q++  +  +  + +++      +++y+v +++++cg+i ++++s + + l +e                      
      KKY17387.1 1636 QSAIFKVGDDCRQDVLSLQIIAAFRGIFNNCGLDVY----VYPYRVTATAPGCGVIDVLPNSISRDMLGREAV-------------------- 1704
                      5789******************************99....*******************************98.................... PP

                      HCCHHHHHCCHHHHHHTSSTTHHHHHHHHHSSSH..HHHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCCTCSHC CS
  PI3_PI4_kinase   95 kklkkekklkfekrtalkpksgllqeFvkkspsa..eewlearkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGlilpdewk 185 
                                          +gl+++Fv k+ ++    +++ar +Fv+s+a +sv++y+l+  DRh++Ni+v ++ g++ hIDfG+i++ ++ 
      KKY17387.1 1705 --------------------NGLYEYFVTKYGGEhsIRFQAARANFVKSMAAYSVISYLLQFKDRHNGNIMV-DDAGHILHIDFGFIFDIAPG 1776
                      ....................89***********944489999******************************.***************99999 PP

                      SSSS-.SSSSSS-THHHHHHT...STTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCSS CS
  PI3_PI4_kinase  186 llpfpqekvPfrltrelvlai...dpskdeglfresceealealrrdqnlltrllkkavkdglilw 248 
                        +f  e+ Pf+lt e+++++   + s+++ +f+e+ ++a+ a r  ++ l +l ++++++gl+++
      KKY17387.1 1777 GVKF--ERAPFKLTSEMISVMggsTSSQSYRWFEELTVKAFLASRPYTEKLCHLVSLMLDSGLPCF 1840
                      9998..59*************99999*************************************997 PP

>> PI3Ka  Phosphoinositide 3-kinase family, accessory domain (PIK domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.13   7.9e+02      31      67 ..     279     315 ..     274     326 .. 0.84
   2 !   81.3   0.0   9.5e-27   5.7e-23      61     180 ..    1374    1495 ..    1338    1500 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.13
                 HHHHHTHHHHCTSGGGHHHHHTTS-SSSHHHHHHHHH CS
       PI3Ka  31 eliwkfryylknnkkaltklLqsvkwseesevkeale 67 
                 ++iw+ r  l  ++ al  +L ++   e  ++++al+
  KKY17387.1 279 GSIWQQRLALAVKASALEAFLYCMVVDEDIADADALS 315
                 78********************999888877777765 PP

  == domain 2  score: 81.3 bits;  conditional E-value: 9.5e-27
                  HHHHHHHHHTTSHHTTHHHHTTTTSTTS--.HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHGGSSSSSSHHHHHHHHHHHHSHHHHHHHHHHHHHHH CS
       PI3Ka   61 evkealelldsWaeididdaLeLLdskfkd.esvreyavkvLekasdeelllYllQLVqalkyepikdsalaefLlkralknkrlghfffWyLksei 156 
                  +v+ +l+ l +Wa++++ +a+ ++ +++ + ++v +ya + Le+ s +  ++Y++Q+Vq l+y+    ++++++++++++ +++++h+++W++k++ 
  KKY17387.1 1374 DVNFQLRYLLYWAPVNPMHAVTYFLPAYGNhPFVLQYALRALESHSIDVTFFYVPQIVQSLRYD--ALGYIEQYIIETGKFSQLFAHQIIWNMKANA 1468
                  56778999********************999*********************************..99***************************** PP

                  ...HCCTHHHHHHHHHHHHHHHCHHHH CS
       PI3Ka  157 ...edkevserfksllesylrklsksl 180 
                     e++ev + +k +l++++++l  s 
  KKY17387.1 1469 ykdEESEVPDSVKPVLDKVMDSLIASF 1495
                  887777778888888888887776655 PP

>> His_kinase  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0038        23      28      74 ..     116     162 ..     108     165 .. 0.85
   2 ?   -2.4   0.0       1.1   6.4e+03      34      48 ..     252     266 ..     240     278 .. 0.68
   3 ?    4.1   0.1    0.0099        59      30      75 ..    1162    1206 ..    1133    1209 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0038
  His_kinase  28 edpeeaeemlekLskllrysleseee.vtLeeElellesYlelqklrf 74 
                 +++ e+++++ +L  +lr++  ++ + ++++e l+l+++  ++ + rf
  KKY17387.1 116 KEAAEISTVTLSLVGFLRAVA-DHAQfWSISEQLRLIQQLRSILSDRF 162
                 46788999*************.5556699*********9998887776 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.1
  His_kinase  34 eemlekLskllrysl 48 
                  +mle L++++r +l
  KKY17387.1 252 DSMLEYLADVIRDVL 266
                 469999******999 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.0099
  His_kinase   30 peeaeemlekLskllrysleseee.vtLeeElellesYlelqklrfg 75  
                  p++ +++l+ + k l  + +  ++  +L +E+ +l  Y++lq lr++
  KKY17387.1 1162 PNTQRTFLTLILKTLDGFRK--SKgHPLTREIYCLAVYFALQILRYN 1206
                  44445555555555555552..22389******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1893 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.06u 0.33s 00:00:01.39 Elapsed: 00:00:00.50
# Mc/sec: 11320.67
//
Query:       KKY17388.1  [L=531]
Description: putative lanosterol 14-alpha-demethylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-63  214.9   0.0    2.1e-63  214.7   0.0    1.1  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.7   0.0   1.2e-67   2.1e-63       4     460 ..      56     523 ..      52     526 .. 0.90

  Alignments for each domain:
  == domain 1  score: 214.7 bits;  conditional E-value: 1.2e-67
                 ESEHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH.HHHHHHHHH CS
        p450   4 ptplplvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang.ekwkklRrf 101
                 + ++p++g+ + +g    ++++++ +++kyg++f++ l +++++v  g++  + +l+ k ++ +++  +  l+t   p  g++v+++++ +k +++++f
  KKY17388.1  56 FHWVPIIGSTVTYG--IDPFKFFFACREKYGDVFTFILLGQKTTVCLGTKGNEFILNGKLKDLNAEEVYTRLTT---PVFGRDVVYDCPnSKLMEQKKF 149
                 5699*********9..789****************************************999999877777776...********************** PP

                 HHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHT CS
        p450 102 ltptltsfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllk 199
                 +   lts  +l s + l+++e+  ++++    a++ +++di + +++ ++ + ++ l g++        ++++++ +++l++ l+  +  ++++ p++ 
  KKY17388.1 150 VKFGLTSE-ALrSHVLLITQETLSFLNNKPALAKQTGTIDICPTMAELTIYTASRSLQGKE-------VREKFDASFADLYHDLDMGFSPINFMLPWA- 239
                 ********.999****************999999999999999999888776666666665.......556788888888888888899999999966. PP

                 CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH CS
        p450 200 ylptkllrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqek 298
                   p ++++k ++a++k+ +++ ++i+ rr+  + +  ++ d++  l++ +  k+g+ ++ d+e+a+ ++ ll+aG++ +s+t++w+L+ La++P++qe+
  KKY17388.1 240 --PFPHNKKRDAAREKMVETYTAIIKARRDAGNVK--TEEDMIWNLMSCQ-YKDGK-NIPDHEVAHMMIALLMAGQHSSSATSAWILLRLATRPDIQEE 332
                 ..788999999*********************999..9***********7.77777.9***************************************** PP

                 HHHHHHHHCCTTT.T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.........EEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGG CS
        p450 299 lreEidevlgdkr.eptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg.........ylipkGtevivnlyalhrdpevfpnPeeFdpeR 387
                 l eE ++vlg++  ++tyd lqkl++  +v+kEtLRlh +++ +++R+v++++ i           y++p   + +  ++ ++r +++fp++ +  p+R
  KKY17388.1 333 LFEEQKKVLGEDLpPVTYDGLQKLTLNSNVVKETLRLHAPIH-SIMRQVKSPMAITAetndkhgrqYVVPPSHRLLSAPGFTSRLDSYFPEAMTWEPHR 430
                 *********665559***************************.********777742233355678********************************* PP

                 GB-TTS...................CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSC.SSEEESSSSE CS
        p450 388 Fldekg...................nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppileks.glllppkpik 460
                 +++                       sk+ +  +lPFGaG++ CiGe++A+++l  ++a+l++  ++++ +++++    + s  +++p +p+ 
  KKY17388.1 431 WEEGHRlaytggevkeeqydygygmVSKGAQSPYLPFGAGRHRCIGEQFAYVQLGTIVANLVRVMKLSTVDGSQKVVETDYSsLFSRPMSPAL 523
                 ****99*******************778*****************************************999888777766667777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.48
# Mc/sec: 3323.17
//
Query:       KKY17389.1  [L=139]
Description: hypothetical protein UCRPC4_g05633 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      142  (0.00792013); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1083.38
//
Query:       KKY17390.1  [L=542]
Description: putative benzoate 4-monooxygenase cytochrome [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-50  170.3   0.0    4.6e-45  154.2   0.0    2.0  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   6.7e-07     0.012      11     161 ..      47     191 ..      37     243 .. 0.74
   2 !  154.2   0.0   2.6e-49   4.6e-45     254     460 ..     298     531 ..     267     534 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.7e-07
                 HCHHHHTT.TCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTS CS
        p450  11 gnllqlgr.keelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptlts 108
                  + l ++  ++++   +++l++kygp++r+ + + ++  ls   a + ++++++  f+++  +++++    +   +   f +  ++++ +++l  +  +
  KKY17390.1  47 RYRLAYSAfQGHRCATIHELHEKYGPVVRVTPTEISFSSLS---ALRTIYGAGS-GFERTDFYRMFDV---YGAPNLFSFRSVRDHRERKKLLSHAYSN 138
                 444555555777888899*************9999998888...8888888885.4444433333333...3444444444446666666666666666 PP

                 HSTT..THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSH CS
        p450 109 fgkl..sleelveeeaedlveklrkkagesselditellskaaldvigsilFgar 161
                 + +l    ++lve  +++ ++ lr++ + +  ++++  l ++ +d+i++ ++g +
  KKY17390.1 139 QMILnpHNTALVEGKVAQYINFLRTEPEIA--SETFASLHYFSFDTISEFMYGPE 191
                 6333337899********************..9*****************99976 PP

  == domain 2  score: 154.2 bits;  conditional E-value: 2.6e-49
                 CTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..SHHHHHHHHHHHHHHCCTTT...T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESS CS
        p450 254 gesklsdeelaatvlellfaGvdTtsstlswaLyeLak..nPevqeklreEidevlgdkr...eptyddlqklpyldavikEtLRlhpvvplllpRevt 347
                   + l+d e+a ++ + l+aG+dTts  +++ +  L +  n+ +q++lr E+ + l  +     p+ +   +lpyl+avi+EtLRl+ ++p++ pR  +
  KKY17390.1 298 T-TGLTDMEIASECADQLLAGIDTTSDSSMFLIWALSRpeNKIYQDRLRAELLTNLTFDPttgVPELKSALHLPYLNAVIRETLRLYAPLPTSEPRSSP 395
                 2.48************************999999998544888*************6655689************************************ PP

                 SCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS.....................CTESSCTT--TTEEGGGS-TTHHHHHHHHHHH CS
        p450 348 kdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg.....................nskrksfaflPFGaGpRnCiGerlArmelklf 425
                  +v i+++lip+Gt+v++++y+lhr+p  fp P +F+peR+l                          s+ ++ +f  F+ G R+CiG +lA+ e+  +
  KKY17390.1 396 VPVLIDNHLIPAGTTVSMSPYTLHRSPHAFPSPLTFNPERWLLPISsppsntpitttttkptytplpTSSPPNQYFWSFSSGGRMCIGLHLAMAEMTCL 494
                 ******************************************8877899999**************97778999************************* PP

                 HHHHHHHEEEEESTSTSGGEEESSC..SSEEESSSSE CS
        p450 426 latlLqnFevelqpetdpppileks..glllppkpik 460
                 +a +  nFe  l++ ++   i +++   + ++++p++
  KKY17390.1 495 IAAIYGNFETGLPKNKKDLHIVNEKkgTINTNSEPYY 531
                 ***********99888888887777655556666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3920.40
//
Query:       KKY17391.1  [L=921]
Description: putative condensin complex component cnd2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-293  976.1   4.8     2e-293  975.8   4.8    1.0  1  Cnd2      Condensin complex subunit 2
  ------ inclusion threshold ------
      0.034   14.4   0.0      0.099   12.9   0.0    1.8  1  CNDH2_N   Condensin II complex subunit CAP-H2 or CNDH2, N-ter
        6.3    6.5   7.7          3    7.5   1.8    3.0  3  FAM176    FAM176 family


Domain annotation for each model (and alignments):
>> Cnd2  Condensin complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  975.8   4.8  3.4e-297    2e-293      12     756 ..       1     865 [.       1     872 [. 0.89

  Alignments for each domain:
  == domain 1  score: 975.8 bits;  conditional E-value: 3.4e-297
        Cnd2  12 vkiplNDDeaEkakrrksrqalheaqinqikaaatparrrksaaveeaassssprtP...........................ktpmkrvpilanfee 83 
                 +kiplNDD +Eka+r++srqalh++q+nqikaaa+p r+ ++    ++assssp+tP                            tp+krvpilanfee
  KKY17391.1   1 MKIPLNDDFSEKAARLQSRQALHDIQMNQIKAAASPVRKLSN---YNRASSSSPKTPrsisgtyhrggvapgkendpdgltggvVTPIKRVPILANFEE 96 
                 589*********************************887663...3356799***********************9999987644************** PP

        Cnd2  84 wmklatdNKInakNsWnlaLIDyfhdmsLLkegdsvNFqkAsctLDgcvKIYtsRVDSvatetgkllsgLadstekkkkdneeeedeeegdeeeeeeeg 182
                 wmk+atdNKIna+NsWn+aLIDyfhdmsLLkegd+vNFqkAsctLDgcvKIYtsRVDSvatetgkllsgLads+++ kk++++++ e+++deeee eeg
  KKY17391.1  97 WMKMATDNKINANNSWNFALIDYFHDMSLLKEGDGVNFQKASCTLDGCVKIYTSRVDSVATETGKLLSGLADSGNSGKKQRAGDG-EGDEDEEEE-EEG 193
                 **************************************************************************99998877554.445555554.58* PP

        Cnd2 183 edgeekkkkkkKkqrsseatlaksfeslqlkklelefavDPLFkkasAdfDeggakglLLNhLsidsegrivfDssddaedaa................ 265
                 edg  kkk kkK qrs+eatla+sfe+lqlkklelefavDPLFkkasAdfDeggakglLLNhL+id+egrivfDssdda daa                
  KKY17391.1 194 EDGV-KKKVKKKSQRSHEATLAPSFEALQLKKLELEFAVDPLFKKASADFDEGGAKGLLLNHLAIDTEGRIVFDSSDDAGDAAaeeisriegehdeteg 291
                 ***9.78889************************************************************************9**************** PP

        Cnd2 266 ....sqteeeeeeeeeeedveidlasLaarffpdlerleeldicpslknfdlgdapsgsldipflkapedwrqdkddleaedelgdasgilldddnaag 360
                     + + +++ e +e+++ eid+ +La++ffpdl+ l+++d+cpslk+f lgd   g ldipflk ++dw+qdk  ++    +gd+sgi++d++naag
  KKY17391.1 292 easeNASGNDKAEPSENQEQEIDIGALASKFFPDLSLLDTQDVCPSLKTFALGD-GAGGLDIPFLKSQDDWKQDKSSANG---IGDKSGIVIDEENAAG 386
                 *9875566677777888999**********************************.99******************99776...89************** PP

        Cnd2 361 fdddddgllnafdlggdagfgeggeawareaalepq.......dedegevedn.d..............eyavslsr.kqkkekv.eelrdilsyfdqa 435
                 fdddddg+l++fdl  d+gfgegge wa++aalep+       dede ++++n d               yavs+++ + +++k  +e  +il yfd+a
  KKY17391.1 387 FDDDDDGILGGFDLPPDTGFGEGGEVWAKDAALEPMlrvhrvdDEDE-ADGENqDgvavgdfdpsnpsdPYAVSINHhLGRQDKNeHE--NILHYFDNA 482
                 *************************************9998653333.22222235667788888899899****9998888888677..********* PP

        Cnd2 436 lq..knWagPehWrirrikdvnksee...aakkkrkekepfeidFeapldesvaealftqassnsaislpkkqlkkksrnlLPddkhfnskqLlklflk 529
                 l+  k+WagPehWrirrikd+n+s+    +  + rkekepfeidF apld+s+a+ l+t+a+snsaislpk+q+k+k++nlLPddkhf+sk+Ll lflk
  KKY17391.1 483 LRshKTWAGPEHWRIRRIKDANSSSAattQPVRVRKEKEPFEIDFLAPLDQSLADMLYTPAASNSAISLPKSQWKTKGKNLLPDDKHFSSKSLLTLFLK 581
                 *999***************9998887777777888**************************************************************** PP

        Cnd2 530 Pkarlsrr..............keeveegemdeafwakqkaeeeaakedeeapqGdyDanffadddglpfpqdlgggddddDddlefadarehfsp... 611
                 Pkarl++r               e++++g++d afwa+qk ++e +      ++GdyDanff+dddglpf  ++  +ddddD  l+fadare+fsp   
  KKY17391.1 582 PKARLGARrnvkgypvrsggasIEQQQHGDIDPAFWASQKGPDEGQ----GPASGDYDANFFNDDDGLPFSGGI-PDDDDDDGILPFADAREMFSPpps 675
                 *******************995444799*************96444....4449**************998766.35566666677************9 PP

        Cnd2 612 .........aagaagatgltaela....gleatagaeaklnetlafgstlvtq.prrvrkeyvqYArvAKkvDvrrLKeelWklieeellesaaeeees 696
                          +    ++  l ++l     + +    +++++++ + fg++l+tq +rr+r+eyv+YArvAKkvDvr+LKe+lW+++ ++l++s++++ + 
  KKY17391.1 676 qqpfgtmdpN----ADPSLGQQLGdpsqSQNPDSLQQQSQHQPGSFGAQLITQgGRRLRPEYVNYARVAKKVDVRKLKENLWEGMADSLVKSMEDSLSA 770
                 9999855442....333333333343323334445566778899*********99***********************************987554444 PP

        Cnd2 697 seeaakske....................................keekgalkFtevmnnLkkvypkqmmediStslaFiclLHLANEkgLklekq 756
                 + +  +++                                     +e+ + lkFt++++nL++vyp q+m+diSts++FiclLHLANEkgL+le q
  KKY17391.1 771 DAQL-DHRLptpapsaqgdqdgdvdmmdideevpaakkaevlpagSEHAQPLKFTSMIQNLRNVYPDQQMRDISTSYCFICLLHLANEKGLVLEGQ 865
                 4433.3333699*********************************************************************************987 PP

>> CNDH2_N  Condensin II complex subunit CAP-H2 or CNDH2, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.7e-05     0.099      35     101 ..     128     192 ..     100     203 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.7e-05
     CNDH2_N  35 dggkttlnFaeAaLliqgsavvYsrKveyLyslvyqtlellskkkkkkqkesesekgededaeaaea 101
                 +     +nF +A+  + g +++Y+ +v+ + + + + l  l++  ++ +k+++ + + ded+e+ e+
  KKY17391.1 128 E--GDGVNFQKASCTLDGCVKIYTSRVDSVATETGKLLSGLADSGNSGKKQRAGDGEGDEDEEEEEE 192
                 2..2459********************************9999888555554444444444333332 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.12   7.2e+02     110     144 ..      10      43 ..       6      44 .. 0.84
   2 ?    7.5   1.8   0.00049         3      62     104 ..     175     217 ..     163     228 .. 0.64
   3 ?   -0.7   0.3      0.17   9.9e+02      68      92 ..     282     306 ..     249     323 .. 0.53

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.12
      FAM176 110 lerAqRlEeReriirEIWrngqpdigsgtrslgrv 144
                  e+A Rl  R+  +++I +n    ++s+ r+l+++
  KKY17391.1  10 SEKAARLQSRQ-ALHDIQMNQIKAAASPVRKLSNY 43 
                 59*******95.6899***9888889999998875 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00049
      FAM176  62 keesekasededeeeeeeeedsseseaeeelsefertlsvnvf 104
                 k+++ + + dedeeeeee ed ++++++++ ++++ +  +  f
  KKY17391.1 175 KQRAGDGEGDEDEEEEEEGEDGVKKKVKKKSQRSHEATLAPSF 217
                 2333333778888888888888888888777666555334444 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.17
      FAM176  68 asededeeeeeeeedsseseaeeel 92 
                  + ++de e e +e++s ++  e  
  KKY17391.1 282 IEGEHDETEGEASENASGNDKAEPS 306
                 2333333333333333333322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (921 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 6035.00
//
Query:       KKY17392.1  [L=850]
Description: putative sodium calcium exchanger protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-47  158.8  34.7    7.6e-26   90.9  10.6    2.6  3  Na_Ca_ex  Sodium/calcium exchanger protein
  ------ inclusion threshold ------
        4.4    7.1   8.9          7    6.4   3.2    2.8  3  DUF2157   Predicted membrane protein (DUF2157)


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   9.4   2.1e-26   1.9e-22      33     150 ..       1     110 [.       1     111 [. 0.94
   2 ?   -2.9   0.5      0.67     6e+03      74      74 ..     645     645 ..     614     665 .. 0.46
   3 !   90.9  10.6   8.4e-30   7.6e-26       3     147 ..     674     833 ..     672     837 .. 0.88

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 2.1e-26
                 CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCHHHHHHHHHHHHHHHHHHHTCHHHHHHTEEH CS
    Na_Ca_ex  33 isgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslkldlgllllvallllllvlllllplfvpgrlt 131
                 +s+s++G+t+lA+gn +p+++s+++a  +++++laig+++G+++f+  +v G++a++ ++kv ++s+++d+  ++ va+++++++l+        g+l 
  KKY17392.1   1 MSESLAGVTFLAFGNGSPDVFSTFAAFNSHSGSLAIGELIGAACFISAVVSGSMAIVRPFKVARKSFMRDV-SFFAVAAAFSMSFLA-D------GTLH 91 
                 589********************************************************************.777777777777777.6......**** PP

                 HHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 132 vleglvllllYalylvlsl 150
                 ++e+ v++++Y++y+++++
  KKY17392.1  92 LWECCVMVGFYVFYVIFVV 110
                 ***************9975 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.67
                 H CS
    Na_Ca_ex  74 s 74 
                 s
  KKY17392.1 645 S 645
                 1 PP

  == domain 3  score: 90.9 bits;  conditional E-value: 8.4e-30
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHH.......... CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigs.......... 91 
                 f++f++++++i+++a+ +v  + +++ +lgis+++lGlt++A gns+++l+++i++a+ g + +a+++++G+ ++n+ll+iG+++++++          
  KKY17392.1 674 FLGFLVAIAWIATIANEVVGVLKAFGVILGISDAILGLTIFAVGNSVGDLVADITVARLGFPMMALSACFGGPMLNILLGIGVSGVYMTvshglhkhek 772
                 89*************************************************************************************999998877777 PP

                 .....BTTSSCECCHHH.HHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  92 .....lkvdseslkldl.gllllvallllllvlllllplfvpgrltvleglvllllYalylv 147
                      lk+++ s++++   +++ v+ll++l+ ll+++pl  ++++++  g+ l++l++l ++
  KKY17392.1 773 hpdrpLKYKPYSIDVSTtLIISGVTLLFTLVGLLVIVPL-NKWKMDRKIGIGLIALWGLSTI 833
                 666666666666777776777777777777777766555.4*****************9876 PP

>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.43   3.8e+03     105     107 ..      96      98 ..      40     127 .. 0.59
   2 ?    6.4   3.2   0.00078         7      50     114 ..     622     688 ..     604     690 .. 0.85
   3 ?    2.8   0.0      0.01        94      34      84 ..     782     838 ..     764     842 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.43
     DUF2157 105 llg 107
                 +++
  KKY17392.1  96 CVM 98 
                 333 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00078
     DUF2157  50 lilfvAanWqglsrlvkfllllvllllslllg.avlwrdr.rvpprlgeallllaalllgaaialvg 114
                 +il+v an  + s  + + l+++ l++s+++  a+l  ++   ppr + +l++l++l+  a ia ++
  KKY17392.1 622 VILIVWANQTSPSPYLLLYLAIGSLVFSAICFfAILTFTTaSTPPRYRSLLCFLGFLVAIAWIATIA 688
                 56777777778888899999*********999888888777899999**999999999999998775 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.01
     DUF2157  34 f.....leallvlGalllglGlilfvAanWqglsrlvkfllllvllllslllg.avl 84 
                        ++l++ G+ ll + + l+v    +++  + k+++ l++l++   +g +v+
  KKY17392.1 782 PysidvSTTLIISGVTLLFTLVGLLVIVPLNKWKMDRKIGIGLIALWGLSTIGnVVV 838
                 044556778888888888888888888888999999999999999999988886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       930  (0.0518713); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.36s 00:00:01.27 Elapsed: 00:00:00.59
# Mc/sec: 4349.58
//
Query:       KKY17393.1  [L=500]
Description: putative gpi anchored cell wall [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-55  185.8   1.2    5.1e-55  185.8   1.2    3.5  3  But2      Ubiquitin 3 binding protein But2 C-terminal domain


Domain annotation for each model (and alignments):
>> But2  Ubiquitin 3 binding protein But2 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.4   8.6         1   1.8e+04      61     107 ..     218     264 ..     124     303 .. 0.68
   2 ?  -10.2  13.5         1   1.8e+04     118     128 ..     282     292 ..     211     348 .. 0.51
   3 !  185.8   1.2   2.9e-59   5.1e-55       1     142 []     350     490 ..     350     490 .. 0.99

  Alignments for each domain:
  == domain 1  score: -5.4 bits;  conditional E-value: 1
        But2  61 etssytlsGsgkfkfsklaapatesttynnkPavkeelgkttlspGn 107
                  ts +  s++++ ++++ +++++es + ++  + ++  ++tt s ++
  KKY17393.1 218 ATSMVATSAPASSEIAGTTTVVSESSSVASSTPAESASPTTTFSTTH 264
                 34455555566666666665555555555443333333332222222 PP

  == domain 2  score: -10.2 bits;  conditional E-value: 1
        But2 118 agqavsyevss 128
                 +  a s+evss
  KKY17393.1 282 SSPASSVEVSS 292
                 22222333333 PP

  == domain 3  score: 185.8 bits;  conditional E-value: 2.9e-59
        But2   1 efPhlIvpvssssPdkafgtsyngtvsstdvstifnFdipasaagktCslvflfptqsqletssytlsGsgkfkfsklaapatesttynnkPavkeelg 99 
                 ++PhlI+pv+s++P+ka+gtsy+g v+st  st+fnFdip+s++gktCsl f+fp +s+let++yt+sG+g ++fskl+++a+esttyn+ P+v++++g
  KKY17393.1 350 QYPHLIIPVNSEQPSKAYGTSYFGYVNST-FSTLFNFDIPTSYEGKTCSLIFDFPLRSELETADYTISGDGAIDFSKLSEVASESTTYNSVPSVATDYG 447
                 79***************************.********************************************************************* PP

        But2 100 kttlspGnaytiasfpCpagqavsyevssagdtsLeffqdynp 142
                 +tt+s Gn y+i++f+Cpag++v+ye+s+ag+t+L +f d+np
  KKY17393.1 448 TTTISSGNGYVISTFSCPAGETVAYEMSNAGSTNLWWFNDWNP 490
                 ******************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1247  (0.0695521); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.12u 0.34s 00:00:01.46 Elapsed: 00:00:00.54
# Mc/sec: 2779.33
//
Query:       KKY17394.1  [L=561]
Description: putative gaba permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-57  194.8  48.0    2.8e-57  194.4  48.0    1.0  1  AA_permease_2  Amino acid permease
    2.8e-17   62.5  36.9    2.8e-17   62.5  36.9    1.5  2  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.4  48.0   3.2e-61   2.8e-57       2     424 ..      46     510 ..      42     513 .. 0.85

  Alignments for each domain:
  == domain 1  score: 194.4 bits;  conditional E-value: 3.2e-61
  AA_permease_2   2 sllsafalvigsv.igsgifvknlaasggpalilwvwiavligslavllvyaEl.ssalprsgGiyvytkaafgkkva....flsawfnwfayvpv 91 
                    s+l++++ +++s  + s+++   ++ sgg++++lw++i+++++ l++++ +aE+ s+  p+ gG+y++++ +  k +     ++++w n+ ++v+ 
     KKY17394.1  46 SMLGLAFAILNSWtALSASLSL-ALPSGGATSVLWGLITAGVCNLCLAASLAEFlSA-YPTAGGQYHWVAVIAWKNWVpslsWITGWVNVAGWVAL 139
                    4555666666664333444433.5788***************************998.***********9885444444555************** PP

  AA_permease_2  92 lasilsvaasyllnalgp...dlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffp 184
                    +a++  ++ + +++a++    +++ ++w+++li+ia ++  +++n++ ++ ++ ++    i++++++ +++ i+ l  ++++ +s +   t+ ++ 
     KKY17394.1 140 TATGGLLGSQLIIGAIALfhsTYEAKRWHQFLIYIAYTLAAFIFNAYTTRLLSLFNQAALIWSLTGF-VVICITLLSCASPDFQSAKFVFTNFINE 234
                    ************8886444449999*********************************999999755.4444455555666666656677778999 PP

  AA_permease_2 185 ngwp.gv..llgllivlwsfdGfesaanvseevkk.k.dvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaii 275
                    +gwp g+  llgll+  + ++Gf++++++ ee+++   + p++++ +++i ++ ++ + + +l+v+ d +    s+lg +++++++a+g+k++++ 
     KKY17394.1 235 TGWPdGIawLLGLLQGGFGLTGFDAVSHMIEEIPNpSyKGPIVMIGCVGIGIGTGFIFLMILLFVLKDVNNVIESSLGPLVQIYYDATGNKAGSVC 330
                    9***7545699*********************9997459*****************************999888888889**************** PP

  AA_permease_2 276 vvilialsllgaintavigssrvlealardgvlP..rffakvn.kfgspiraiiltaivslillllfllassaaynfllsvsslgliisylll.ii 367
                    + ++  +++l+a ++ +++ssr+ +a+ardg+lP  r fa+v+ +f+ p++a+ lt  +++i++++fl++ saa+n+++s+s+++l isy+++ +i
     KKY17394.1 331 LLMFSLVCMLFATTGIMTTSSRMTYAFARDGGLPfsRIFARVHpRFNVPLNALYLTTGLVIIFGCIFLGS-SAAFNAIVSASVVALTISYAIPpAI 425
                    *******************************************************************885.8*********************9** PP

  AA_permease_2 368 galilrkkrphlkr........pgk......................ilvaiigalfllfllvalffppkgpatqssliytiiltva 424
                     +l  rk+ p  +         + +                      ++v + g+ +++++ v++ fp++ p+ +ss++y+++ +++
     KKY17394.1 426 NCLRGRKCLPADRAfklpepigW-FcnlvrfpypsspshplptltffYPVQL-GLAYAILTTVLFLFPSDLPVSGSSMNYAVAAMGI 510
                    *********97755334445551.1566666777888887655555444444.58888888999999**************776665 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5  36.9   3.2e-21   2.8e-17       5     376 ..      52     415 ..      49     424 .. 0.79
   2 ?   -2.8   0.7      0.19   1.7e+03     438     461 ..     495     517 ..     465     526 .. 0.44

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 3.2e-21
  AA_permease   5 ialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyas....rflgpelGfviGlnylfswit.vlaleltaa 97 
                  +a+++ + t+l  +l+ +l ++G  ++l +++ agv+ ++ + sl+e+ +++p +gg y++++    +++ p+l++ +G+  +  w++ +++ +l ++
   KKY17394.1  52 FAILNSW-TALSASLSLALPSGGATSVLWGLITAGVCNLCLAASLAEFLSAYPTAGGQYHWVAviawKNWVPSLSWITGWVNVAGWVAlTATGGLLGS 148
                  6777866.88999************************************************87555599************99999862555679999 PP

  AA_permease  98 siliqfwelvtdlpkawvt..gavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga...gfrflgdngsifknnlppgf 190
                  + +i+ + l+++  +a  +   ++ +++ l+  ++++   +  +++    +i ++ +f+++ i ll+ + p  +     f+++ ++++      p+g 
   KKY17394.1 149 QLIIGAIALFHSTYEAKRWhqFLIYIAYTLAAFIFNAYTTRLLSLFNQAALIWSLTGFVVICITLLSCASPDFQSakfVFTNFINETG-----WPDG- 240
                  9999*99999999999999996677777777777777777777777555555555555555533333333222211224455555555.....4444. PP

  AA_permease 191 akeeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvl 288
                           +++ ++ +  f++tG+ +v  + +E+ +P+ + P++++  v +   + +++++l++ll++ +d +++ +s  + +++ i+   +g+++ 
   KKY17394.1 241 --------IAWLLGLLQGGFGLTGFDAVSHMIEEIPNPSYKGPIVMIGCVGI--GIGTGFIFLMILLFVLKDVNNVIESSLG-PLVQIYYDATGNKAG 327
                  ........68999*********************************999865..6778888888888888888888777766.7999*********** PP

  AA_permease 289 aplinaviltaalssansslysasRvlyslakdglaP...kvlkkvskrgvPlraillsmiisllal..llaslnlaapivfnfllaisalig 376
                  ++ + +++l+  l++  ++++++sR+ y++a+dg +P    +++++ + +vPl+a++l++ ++ ++   +l s++     +fn ++++s ++ 
   KKY17394.1 328 SVCLLMFSLVCMLFATTGIMTTSSRMTYAFARDGGLPfsrIFARVHPRFNVPLNALYLTTGLVIIFGciFLGSSA-----AFNAIVSASVVAL 415
                  ***************************************88889999************9888777722333333.....4444444444443 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.19
  AA_permease 438 kkgpkdwgaasfaaaylivllfli 461
                  + +++++++a+ aa+ + +l+ ++
   KKY17394.1 495 PVSGSSMNYAV-AAMGIVFLISVV 517
                  33333333333.233333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.51
# Mc/sec: 3318.33
//
Query:       KKY17395.1  [L=891]
Description: putative tpa: zn 2cys6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.013   15.7   0.3        0.2   11.9   0.0    2.9  3  GST_C         Glutathione S-transferase, C-terminal domain
       0.17   12.2   2.3          8    6.9   0.1    2.6  2  Endotoxin_C2  Delta endotoxin
       0.61   10.6   3.2         27    5.4   0.8    3.2  2  Rnk_N         Rnk N-terminus


Domain annotation for each model (and alignments):
>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.45   2.7e+03      20      38 ..     179     197 ..     164     206 .. 0.66
   2 ?   11.9   0.0   3.3e-05       0.2      48      90 ..     557     598 ..     533     600 .. 0.92
   3 ?   -1.3   0.0      0.43   2.5e+03       3      31 ..     644     672 ..     643     678 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHHHHHHHHH CS
       GST_C  20 keelvdealekvaevlsal 38 
                 ++e+ +e++++++ev+sa+
  KKY17395.1 179 RKESEAESDKEKFEVFSAF 197
                 3446677777777777776 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 3.3e-05
                 SSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHHHHHH CS
       GST_C  48 lvGdkltlADialvpilnwlqrlglafgqekfpnlkawlerim 90 
                 + ++++++ADia +++ n++++ ++a g e+   ++ ++++++
  KKY17395.1 557 FNDNQIGYADIATLEAENRAEEAKIATG-EEMEDVQTFVKEVF 598
                 6699************************.**********9987 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.43
                 HHHHHHHHHHHSTTHHHHHHHHHHHHHHH CS
       GST_C   3 dlisqilllfyvkaeekkeelvdealekv 31 
                 + +++ ll++y k++ + ++l+++ale+ 
  KKY17395.1 644 PQAMDTLLVIYSKMQVRHQKLLEAALERS 672
                 5689999************9999998875 PP

>> Endotoxin_C2  Delta endotoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1    0.0013         8       2      18 ..     545     561 ..     544     572 .. 0.91
   2 ?    4.2   0.4    0.0091        54      32      59 ..     855     883 ..     853     884 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0013
  Endotoxin_C2   2 kqeaAtkaVnaLFtdnn 18 
                   +qe+A+  ++aLF+dn+
    KKY17395.1 545 RQEEAERNIDALFNDNQ 561
                   699************97 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0091
  Endotoxin_C2  32 daAqalVdkvtd.stkKaeLqadidkAqe 59 
                   d +++l dk+ + ++ K+ L++ +++A++
    KKY17395.1 855 DLVKNLLDKLEEsPDHKKRLEEALERAKK 883
                   66899******999*************96 PP

>> Rnk_N  Rnk N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.014        84       5      24 ..     759     779 ..     758     789 .. 0.83
   2 ?    5.4   0.8    0.0045        27      15      38 ..     859     881 ..     857     882 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.014
                 EEHHHHHHHHHHHHCTTTT.S CS
       Rnk_N   5 itelDleRLeaLldsladr.d 24 
                 +++ D+++L+++l s +++ d
  KKY17395.1 759 VSTYDYDILRSILLSTQSAlD 779
                 899**********98876544 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0045
                 HHHHCTTTTSSTTHHHHHHHHHCS CS
       Rnk_N  15 aLldsladrdppaaeaLeaELdRA 38 
                 +Lld+l   +p++ ++Le+ L+RA
  KKY17395.1 859 NLLDKLE-ESPDHKKRLEEALERA 881
                 89**886.588************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (891 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1110  (0.0619109); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.47
# Mc/sec: 5674.80
//
Query:       KKY17396.1  [L=501]
Description: putative amino acid permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   9.3e-145  482.9  40.9   1.1e-144  482.6  40.9    1.0  1  AA_permease    Amino acid permease
    9.8e-36  123.5  42.0    1.2e-35  123.2  42.0    1.1  1  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
       0.11   11.3   0.2       0.17   10.7   0.2    1.3  1  DUF4781        Domain of unknown function (DUF4781)


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  482.6  40.9  1.8e-148  1.1e-144       4     474 ..       1     459 [.       1     463 [. 0.99

  Alignments for each domain:
  == domain 1  score: 482.6 bits;  conditional E-value: 1.8e-148
  AA_permease   4 vialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasili 101
                  +ia+gg iGtglfvg+g++l+++Gp+++l+a+ l+gv+++++m +lge+ +++p+sg+f++y++rfl+p++Gf+++ ny ++w++vl+le++aasi++
   KKY17396.1   1 MIAIGGSIGTGLFVGSGKALATGGPASLLIAFSLIGVMLYCTMHALGELCVLFPVSGSFAAYSTRFLDPAWGFAMASNYTLQWLVVLPLEIVAASITV 98 
                  8************************************************************************************************* PP

  AA_permease 102 qfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeeegaf 198
                   +w  ++d++   +++avfl+++++in++gvk+ygeaef+++++k+ a+i+fii+gii+ +gg+pn ++ g+r + d+g+     + +g        f
   KKY17396.1  99 DYW--NSDIS-NAAWVAVFLLLIVAINFFGVKGYGEAEFVFSIVKVTAVIGFIILGIIIDCGGGPNGKYiGGRLWIDPGA-----FHNG--------F 180
                  ***..*****.*********************************************************************.....999*........* PP

  AA_permease 199 knfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa...aspfvifikesgvsvlaplin 293
                  k+ +svfv+++faf G+el++++a+E+++P+ks+P ai+qv++rit+fY+ sl l+gllvp++d+ ll ++ sa   aspfvi+ik++g+s+l++++n
   KKY17396.1 181 KGLCSVFVTAAFAFGGTELIGLAAAETANPRKSLPTAIKQVFWRITLFYIVSLTLVGLLVPYTDKRLLDGASSAdakASPFVIAIKNAGISGLPSVMN 278
                  *********************************************************************9999999********************** PP

  AA_permease 294 aviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfR 391
                  +vi ++++s++ns++y +sR+l ++a++g aP+++++++++g+Pl ai++ ++++++a+++as + +  ++f+++la+s+l+ +++w++i+l+++rfR
   KKY17396.1 279 VVIMISVISVGNSAIYGSSRTLAAMAEQGQAPRIFAYIDRKGRPLFAIIFASFLGFIAFIAASDKQE--VAFDWMLALSGLSSIFTWGSICLAHIRFR 374
                  ***************************************************************9999..***************************** PP

  AA_permease 392 kalkyqgrsieelgfkaallplgvilvlaaliiillilalyay..ltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkr 474
                  +a+ +qg+ ++el f+++ ++ g+++++++++++l++++++ +  + +k+  +  ++++f++ayl +++++i+++++k+++k+++
   KKY17396.1 375 RAWAVQGHTLNELAFRSQPGVIGSWIGFIFNVLVLITQFWTGFaaIGYKTESGAARTQDFFEAYLAAPIVIICYIAYKIYFKTSI 459
                  ****************************************9885567899999999**************************986 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2  42.0     2e-39   1.2e-35       9     404 ..       2     414 ..       1     448 [. 0.84

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 2e-39
  AA_permease_2   9 lvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaasy 102
                    ++ig  ig+g fv +  ++a+ggpa++l+ +  +++++++ + ++ El+ ++p sg    y+ ++  + ++f +a  +++++++vl++  +vaas 
     KKY17396.1   2 IAIGGSIGTGLFVGSgkALATGGPASLLIAFSLIGVMLYCTMHALGELCVLFPVSGSFAAYSTRFLDPAWGFAMASNYTLQWLVVLPLE-IVAASI 96 
                    89************9*9999*****999999888888899**********************************************875.667777 PP

  AA_permease_2 103 llnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.....stetdtffpngwpgvllg 193
                     +  +++d+ +      + ++++l+l+++in +g+k+++ + ++  i+k++  +i +iilg+i+ +ggg + +      +++   f ng +g  ++
     KKY17396.1  97 TVDYWNSDISNAA----W-VAVFLLLIVAINFFGVKGYGEAEFVFSIVKVT-AVIGFIILGIIIDCGGGPNGKyiggrLWIDPGAFHNGFKGLCSV 186
                    7888999986643....3.456799999**********************5.8888888**********997777766444444888999999*** PP

  AA_permease_2 194 llivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpd.dei.....anlsnlgsvaalffeavggkvvaiivvilia 281
                    + +++++f+G e +   + e  +++k +p ai  ++  ++++y++   ++   vp  d+      ++ +   s++ +  +++g + + ++++++i+
     KKY17396.1 187 FVTAAFAFGGTELIGLAAAEtaNPRKSLPTAIKQVFWRITLFYIVSLTLVGLLVPYtDKRlldgaSSADAKASPFVIAIKNAGISGLPSVMNVVIM 282
                    ********************5555589*****9999999999999888888888874554677753444466789********************* PP

  AA_permease_2 282 lsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas..saaynfllsvsslgliisyllliigalilrkk 375
                    +s++  +n+a++gssr+l a+a++g  Pr fa ++++g+p+ aii+   + +i +  +++++  + a++++l++s l++i+ ++ + ++ +  r+ 
     KKY17396.1 283 ISVISVGNSAIYGSSRTLAAMAEQGQAPRIFAYIDRKGRPLFAIIFASFLGFIAF--IAASDkqEVAFDWMLALSGLSSIFTWGSICLAHIRFRRA 376
                    **************************************************97665..3444589*********************99999888887 PP

  AA_permease_2 376 rphlkr..........pgkilvaiigalfllfllvalff 404
                      +++           pg ++ ++ig++f++++l++ f+
     KKY17396.1 377 WAVQGHtlnelafrsqPG-VIGSWIGFIFNVLVLITQFW 414
                    777744455666556544.44666666666666666553 PP

>> DUF4781  Domain of unknown function (DUF4781)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   2.8e-05      0.17     110     179 ..     273     341 ..     246     349 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.8e-05
     DUF4781 110 latPvaapvllaalvvgvgsavYstgRsiqrLvDrstHeesisltdrearnswLgvaagvvglgaagata 179
                 l   ++ +++++ ++  + sa+Y+ +R  + ++++++  +     dr+ r+ +  ++a+ +g+ a  a++
  KKY17396.1 273 LPSVMNVVIMIS-VISVGNSAIYGSSRTLAAMAEQGQAPRIFAYIDRKGRPLFAIIFASFLGFIAFIAAS 341
                 333355556666.5555689*********************99*********************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3364.77
//
Query:       KKY17397.1  [L=865]
Description: hypothetical protein UCRPC4_g05641 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.15   11.5   1.9       0.24   10.8   1.9    1.3  1  Rep_1        Replication protein


Domain annotation for each model (and alignments):
>> Rep_1  Replication protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.9   1.3e-05      0.24     173     243 ..     346     418 ..     318     425 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.3e-05
       Rep_1 173 tvkpsdlekdeevleeLekalkgkRlialggllkeykkelkldeledeldlieve..ekeeeeeeekivlkwr 243
                  v++++l ++ e+ e  +k +++ R + + + +++yk+e++  + +de+d  + +  e+e+e+e +k+++k r
  KKY17397.1 346 LVESAHLAAKLEYHEPVKKPVHESRRVMTPAQFERYKREQESKDDSDEEDSDHGNeqEEEDEVERTKEAMKQR 418
                 4778888999999************************999888888777777776434555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (865 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1393  (0.0776954); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.48
# Mc/sec: 5380.53
//
Query:       KKY17398.1  [L=960]
Description: putative dna excision repair protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-54  185.0   0.5    1.2e-52  178.7   0.1    2.8  2  SNF2_N         SNF2 family N-terminal domain
    5.5e-17   62.1   0.0    4.1e-16   59.3   0.0    2.4  3  Helicase_C     Helicase conserved C-terminal domain
    1.3e-07   31.7   0.0    6.1e-07   29.6   0.0    2.0  2  ResIII         Type III restriction enzyme, res subunit
    4.5e-05   22.5   0.3    9.7e-05   21.4   0.0    1.6  2  AAA_34         P-loop containing NTP hydrolase pore-1
    5.1e-05   23.1  11.0    5.1e-05   23.1  11.0    2.4  2  zf-C3HC4       Zinc finger, C3HC4 type (RING finger)
    0.00057   19.7  10.3    0.00057   19.7  10.3    2.4  2  zf-C3HC4_3     Zinc finger, C3HC4 type (RING finger)
     0.0091   16.3  12.3     0.0091   16.3  12.3    2.6  2  zf-RING_2      Ring finger domain
  ------ inclusion threshold ------
       0.02   14.1   0.0      0.045   13.0   0.0    1.5  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
        1.2    9.2  15.9       0.32   11.1   3.8    2.5  2  Zn_Tnp_IS91    Transposase zinc-binding domain


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.7   0.1   6.2e-56   1.2e-52      51     350 .]     369     694 ..     357     694 .. 0.87
   2 ?   -2.6   0.1      0.86   1.7e+03     116     167 ..     782     825 ..     780     837 .. 0.68

  Alignments for each domain:
  == domain 1  score: 178.7 bits;  conditional E-value: 6.2e-56
                 HHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH--------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  51 akqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapkllad 149
                  k++++GG+L DemG+GKT+q+++li+                ++++ptL+vvP   l qW+ ei+++++++ l+vlvy+g++   +k +++++k l +
  KKY17398.1 369 EKSQWKGGLLGDEMGMGKTIQAVSLIM-------------SDFPAKDPTLVVVPPVALMQWQAEIHAYTNGK-LQVLVYHGSN---SKAKNLSKKDLMK 450
                 6789***********************.............2345679**********************987.9*******86...666789******* PP

                 --EEEE-HHHHHHHT..................TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT- CS
                 xxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 150 ydvvittYdvlsreaelq............kkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfg 236
                 y+v++++Y+ l++    +            k+ sv+++++ +r++lDE+h +k+ t+ +a a+  L+++++w+l+GTP+qn   ++++Ll fL+ epf+
  KKY17398.1 451 YNVIMISYSGLESMYR-KeskgwnrnsglvKEDSVMHDIHFHRIILDEAHSIKQRTTGVARACFALKADYKWCLSGTPVQNRIGEFFSLLRFLELEPFS 548
                 ***********96654.25999****************************************************************************9 PP

                 -HHHHHHHTHHHHH.....................................HHHHHHHHHHHTT-STTEE---GGGT..--S---EEEEEEEEE--HHH CS
                 xxxxxxxxxxxxxx.....................................xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 237 ekqtfdkllqrpie.....................................aqaekgrsrLlqllqrlmlrrakkdv..eknlPpkteeiiflklskve 296
                    + + +  + i+                                     + +++g  +L+ +  r+mlrr+k+d   + +lPpk++ i+   + + e
  KKY17398.1 549 C-YFCKACPCKQIHwtqdsskmctscrhsgfshvsvfnqeilnpitqgenlSLRKAGLDKLRLITDRIMLRRVKRDHtsSMELPPKEVIIHNQFFGEIE 646
                 4.4444444444445555667889**************************999***********************987779***************** PP

                 HHHHH....................HHHHHH-HHH-HHHHHHHHHHHHH---XX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 297 rksYnrllevlrkkalakllkrseaalkssskskekilelllelrqacnhpqlv 350
                 r +   +++  + ++     +r ++  +      ++i++l+++ rq+ nhp+l+
  KKY17398.1 647 RDFSSSIMSNTTRQFDTY-VSRGVMLNNY-----ANIFGLIMQMRQVSNHPDLI 694
                 ***996665555544443.3343344343.....459**************985 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.86
                 HHH-TTS-EEE--SSHHHH-----------------EEEE-HHHHHHHT... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 116 erhvsssalrvlvyggqkkmkkkntkvapklladydvvittYdvlsreaelq 167
                 e ++ss ++++lvy+  k           k ++ + +v+  +  + + +e++
  KKY17398.1 782 EDWTSSTKIEMLVYDLYKL--------RSKKQTHKSIVFSQFTSMLQLVEWR 825
                 6899999999999999652........3445666667776666666666655 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.6   9.1e+03      35      54 ..     424     441 ..     401     457 .. 0.63
   2 ?   -1.5   0.0       1.6   3.1e+03      20      72 ..     652     708 ..     639     716 .. 0.71
   3 !   59.3   0.0     2e-19   4.1e-16       9     111 .]     796     903 ..     788     903 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.6
                 HHHHTTSTEEEESTTSTHHH CS
  Helicase_C  35 llekkgikvavlhgelpqne 54 
                    + +++v+v+hg+ ++ +
  KKY17398.1 424 T--NGKLQVLVYHGSNSKAK 441
                 2..44788899999765554 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.6
                 EEEESSHHHHHH....HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEE CS
  Helicase_C  20 lifvntidrlek....vklllekk.gikvavlhgelpqnereeileqfnkgesdvLia 72 
                  i++nt+++++       +l++   +i  ++++ +  +n+ + il++  +g ++vL++
  KKY17398.1 652 SIMSNTTRQFDTyvsrGVMLNN-YaNIFGLIMQMRQVSNHPDLILKKHAAGGQNVLVC 708
                 5777777777655542333333.24677777777778888899999999999999987 PP

  == domain 3  score: 59.3 bits;  conditional E-value: 2e-19
                 HH...HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSHHHHHH CS
  Helicase_C   9 ll...kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlprnvtsyiq 102
                  l    ++++++k+++f++++++l+ v++ l++ g+++++l+g+++  +r++++e f  + ++  +L++ ++++  +++++++ V ++d+++n++  +q
  KKY17398.1 796 DLyklRSKKQTHKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGSMSPAQRQKSIEYFMnNVDVEvFLVSLKAGGVALNLTEASRVYIVDPWWNPAAEWQ 894
                 333557899***************8888889999***********************53778889********************************** PP

                 HHTTSSSTT CS
  Helicase_C 103 riGRtgRag 111
                 +++R++R+g
  KKY17398.1 895 SADRCHRIG 903
                 *******97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   3.1e-10   6.1e-07      13     169 ..     363     527 ..     340     529 .. 0.76
   2 ?   -1.6   0.0       1.2   2.3e+03      85     114 ..     780     818 ..     715     847 .. 0.74

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 3.1e-10
                 HHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.......GEEEESSS-B--..........-S CS
      ResIII  13 enlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke...igkkvsgdkkka...kekdstnkk 105
                 + +    ++ + k gl+  + G+GKT+ a++li + + +++   +l++vp  +l+ q++ e+  +++ + +    +     g + ka   ++kd  + +
  KKY17398.1 363 NWMTR-QEKSQWKGGLLGDEMGMGKTIQAVSLIMSDFPAKD--PTLVVVPPVALM-QWQAEIHAYTNGKLQVlvyH-----GSNSKAknlSKKDLMKYN 452
                 33332.2337778999999************9999999855..9********996.9*********9998555443.....4444444445699999** PP

                 EEEEEHHHHHHTH..................HHHTTT-SEEEEETGGGTTS.T.TTHHHHHT---SEEEEEESS- CS
      ResIII 106 ilvttiqsldadseee..........eeeseellrdrfdviiiDEaHrlgakk.swreilekfkeavllglTATp 169
                 +++++++ l +  ++e           +e+  + + +f  ii DEaH +++ +  + ++  ++k+ ++  l++Tp
  KKY17398.1 453 VIMISYSGLESMYRKEskgwnrnsglVKEDSVMHDIHFHRIILDEAHSIKQRTtGVARACFALKADYKWCLSGTP 527
                 *******99999988899999999988888889999999*********999733555555555666666677776 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
                 GEEEESSS-B--................-SEEEEEHHHH CS
      ResIII  85 igkkvsgdkkka.........kekdstnkkilvttiqsl 114
                  ++++++ +k++         ++k++t+k+i++++  s+
  KKY17398.1 780 RMEDWTSSTKIEmlvydlyklRSKKQTHKSIVFSQFTSM 818
                 555566666666777777777788888888988887766 PP

>> AAA_34  P-loop containing NTP hydrolase pore-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   4.9e-08   9.7e-05      12     188 ..     333     505 ..     322     518 .. 0.74
   2 ?   -3.6   0.0         2   3.9e+03      41     166 ..     790     823 ..     763     837 .. 0.45

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 4.9e-08
      AAA_34  12 lasveppdvtyklklpkevveegklSalQleavvyacqrheellpdgkRaGfllGDgaGvGkgrqiagiilenllqgrkkavwvsvsedLkeDaerDlk 110
                 l ++ep ++  +++ p+  + ++kl + Qle++ + ++     +++++ +G llGD++G+Gk+ q  ++i++ + ++    v+v   + ++  ae    
  KKY17398.1 333 LKAIEPIKPIAAEQ-PE-GI-SRKLKSFQLEGLNWMTR-----QEKSQWKGGLLGDEMGMGKTIQAVSLIMSDFPAKDPTLVVVPPVALMQWQAEIHAY 423
                 55555555555433.33.23.34677888888766544.....4555667889***********************99999999999999999998888 PP

      AAA_34 111 digaseievvalnklkegkkikeseelkeGvlFvtYstliseskkkk..ksrleqlveWlg..edfd.GvivfDEchkaknla 188
                   g+ ++ v++ ++ k++ ++++++ +k  v+++ Ys l s  +k++   +r + lv+  +  +d+    i++DE+h++k+ +
  KKY17398.1 424 TNGKLQVLVYHGSNSKAK-NLSKKDLMKYNVIMISYSGLESMYRKESkgWNRNSGLVKEDSvmHDIHfHRIILDEAHSIKQRT 505
                 888888888888888777.67689999************999888554567778887654422333324899******99876 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2
      AAA_34  41 leavvyacqrheellpdgk......RaGfllGDgaGvGkgrqiagiilenllqgrkkavwvsvsedLkeDaerDlkdigaseievvalnklkegkkike 133
                 +e +vy   + +++ +++k                                                                                
  KKY17398.1 790 IEMLVYDLYKLRSKKQTHKsivfsqF------------------------------------------------------------------------- 815
                 33333333333332222222222220......................................................................... PP

      AAA_34 134 seelkeGvlFvtYstliseskkkkksrleqlve 166
                                          + + qlve
  KKY17398.1 816 -------------------------TSMLQLVE 823
                 .........................33333333 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.0   7.0         9   1.8e+04      21      41 .]     551     573 ..     547     578 .. 0.48
   2 !   23.1  11.0   2.6e-08   5.1e-05       1      41 []     708     750 ..     708     750 .. 0.94

  Alignments for each domain:
  == domain 1  score: -6.0 bits;  conditional E-value: 9
                 B-CHHHHHHHHC..TSSB--TTT CS
    zf-C3HC4  21 fCskCirkilks..rkkvkCPlC 41 
                 fC++C  k +    ++++ C  C
  KKY17398.1 551 FCKACPCKQIHWtqDSSKMCTSC 573
                 55555333222222444445555 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 2.6e-08
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC...TSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilks...rkkvkCPlC 41 
                 C iC e+a+++   + CkH+fC++C +++ +s    +   CP C
  KKY17398.1 708 CCICDEVAEDAI-KSRCKHEFCRQCAKHYFRSfedVGDPDCPRC 750
                 ************.*******************98777777***9 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   7.3       2.4   4.7e+03      23      45 ..     549     575 ..     546     577 .. 0.84
   2 !   19.7  10.3   2.9e-07   0.00057       4      46 ..     707     753 ..     704     755 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.4
                 EEE-HHHHHHHHH....TT-B-TTT-- CS
  zf-C3HC4_3  23 lvlCeeCaekllk....rkkkCpiCrr 45 
                 +++C++C  k       ++k C  Cr 
  KKY17398.1 549 CYFCKACPCKQIHwtqdSSKMCTSCRH 575
                 4689999888777788999******96 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 2.9e-07
                 B-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH.....TT-B-TTT--B CS
  zf-C3HC4_3   4 eCviClerprnvvllpCgHlvlCeeCaekllk.....rkkkCpiCrrp 46 
                  C+iC e  ++++  +C+H  +C +Ca+++ +      ++ Cp C+ p
  KKY17398.1 707 VCCICDEVAEDAIKSRCKHE-FCRQCAKHYFRsfedvGDPDCPRCHIP 753
                 6*******************.**********99****9*******876 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   7.9       3.1   6.3e+03      21      44 .]     549     574 ..     543     577 .. 0.81
   2 !   16.3  12.3   4.6e-06    0.0091       3      43 ..     708     750 ..     706     751 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.1
   zf-RING_2  21 CgHvfhreCl...erwlrssst.CPlCr 44 
                 C   f++ C     +w++ ss+ C  Cr
  KKY17398.1 549 C--YFCKACPckqIHWTQDSSKmCTSCR 574
                 4..39999965557799999989****9 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 4.6e-06
   zf-RING_2   3 CpICleelssadsvlllpCgHvfhreClerwlrssst.....CPlC 43 
                 C+IC +e+  a+++++  C+H f+r+C+++++rs +      CP C
  KKY17398.1 708 CCIC-DEV--AEDAIKSRCKHEFCRQCAKHYFRSFEDvgdpdCPRC 750
                 ****.666..35555556*************999988999****99 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.2e-05     0.045      57     148 ..     803     902 ..     777     909 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.2e-05
  ERCC3_RAD25_C  57 ekrgDkiivfsDnvfaLkeyakklkk.....pyiyGetseaerlkilqkfkknpkvntifls.kvgDtsiDlPeanvliqis..shfgsrrqeaqr 144
                    +k+  k ivfs     L+ +  +l++      ++ G++s a+r+k ++ f +n +v++ ++s k g  +++l ea+ +  ++   + ++  q a r
     KKY17398.1 803 KKQTHKSIVFSQFTSMLQLVEWRLRRagfntVMLDGSMSPAQRQKSIEYFMNNVDVEVFLVSlKAGGVALNLTEASRVYIVDpwWNPAAEWQSADR 898
                    366889*****98888888877765422221799************************9999899**********977666522456677777777 PP

  ERCC3_RAD25_C 145 lGri 148
                      ri
     KKY17398.1 899 CHRI 902
                    7666 PP

>> Zn_Tnp_IS91  Transposase zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   4.3     0.048        95      37      66 ..     547     576 ..     543     592 .. 0.87
   2 ?   11.1   3.8   0.00016      0.32      33      68 ..     699     736 ..     682     741 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.048
  Zn_Tnp_IS91  37 faryeCeeCghekivyfsCksrhCpsCqkk 66 
                  f+ y C+ C  ++i+  +  s++C+sC + 
   KKY17398.1 547 FSCYFCKACPCKQIHWTQDSSKMCTSCRHS 576
                  56789**********************986 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00016
  Zn_Tnp_IS91  33 aalGfaryeCeeCg..hekivyfsCksrhCpsCqkkat 68 
                  aa G +++ C  C+   e  +  +Ck+ +C +C k++ 
   KKY17398.1 699 AAGGQNVLVCCICDevAEDAIKSRCKHEFCRQCAKHYF 736
                  55678888999998445699***************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (960 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       990  (0.0552178); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.48
# Mc/sec: 6042.69
//
Query:       KKY17399.1  [L=638]
Description: putative dna repair protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0016   18.8  14.3         20    5.8   0.0    6.8  7  LRR_4           Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
       0.15   12.0   0.5       0.46   10.5   0.4    2.0  2  zinc_ribbon_4   zinc-ribbon domain
       0.18   11.9   0.9       0.59   10.3   0.9    1.8  1  FYVE            FYVE zinc finger
       0.19   11.9   0.1       0.54   10.4   0.1    1.7  1  CxC7            CxC7 like cysteine cluster associated with KD
       0.64   10.2   2.9        1.2    9.3   0.6    2.6  2  Zn-ribbon_8     Zinc ribbon domain
       0.71   10.0   5.1        1.1    9.3   0.1    2.8  3  XPA_N           XPA protein N-terminal
        1.1    7.4  13.6        1.7    6.9  13.6    1.2  1  CDC45           CDC45-like protein
        3.1    7.5  14.0        6.8    6.4  14.0    1.5  1  RR_TM4-6        Ryanodine Receptor TM 4-6
        4.9    6.2  18.4        7.9    5.5  18.4    1.2  1  SprA-related    SprA-related family


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.25   5.1e+02      10      37 ..     323     352 ..     312     358 .. 0.67
   2 ?    1.9   0.3      0.17   3.4e+02       2      38 ..     339     378 ..     338     386 .. 0.64
   3 ?    5.1   0.7     0.017        34       1      34 [.     365     403 ..     365     407 .. 0.75
   4 ?    5.3   4.3     0.014        28       2      31 ..     393     425 ..     392     463 .. 0.78
   5 ?    1.7   0.0      0.19   3.8e+02      22      40 ..     497     512 ..     470     517 .. 0.66
   6 !    5.8   0.0    0.0098        20       4      41 ..     542     583 ..     540     585 .. 0.71
   7 ?    4.7   0.0     0.022        44       1      30 [.     568     601 ..     568     613 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.25
                 SS---E-S-.....HHH-TT--EEE-.-S---- CS
       LRR_4  10 nNqltdipl.....leklpnLkeLdLsgNnlit 37 
                 + q++d  +     le +p+ k+L L   nl++
  KKY17399.1 323 G-QIKD--PvidymLEHNPKIKHLQLGATNLVS 352
                 4.7776..3335577789999**9996666665 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.17
                 S--EEE--.SS---E-S-...HHH.-TT--EEE-.-.S----- CS
       LRR_4   2 nLevLdLs.nNqltdipl...lek.lpnLkeLdLsg.Nnlitd 38 
                 + ++L L+  N ++d  +   +++  p L++L Ls+ N   ++
  KKY17399.1 339 KIKHLQLGaTNLVSDKAWrklFQQqGPALESLKLSDlN---DS 378
                 66777777534666655555555448999999997744...44 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.017
                 SS--EEE--S.S.---E-S-HH..H.-TT--EEE-.-S- CS
       LRR_4   1 pnLevLdLsn.N.qltdiplle..k.lpnLkeLdLsgNn 34 
                 p Le+L Ls+ N  l d +  e  + + nL+ L L  +n
  KKY17399.1 365 PALESLKLSDlNdSLDDQSIAEmvQhCANLTRLKLEKCN 403
                 67999999974656777777557744********98876 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.014
                 S--EEE--.SS---E-S-..HHH-TT--EEE-. CS
       LRR_4   2 nLevLdLs.nNqltdipl..leklpnLkeLdLs 31 
                 nL+ L L   N++t+ +l  l +l +L++L+L+
  KKY17399.1 393 NLTRLKLEkCNHMTEGSLehLTQLQKLEHLTLN 425
                 89999999768999766666779999****994 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.19
                 -TT--EEE-.-S-----GG CS
       LRR_4  22 lpnLkeLdLsgNnlitdld 40 
                 +p Lk +dLs+N   +d+d
  KKY17399.1 497 NPPLKFIDLSEN---RDID 512
                 444999999999...6665 PP

  == domain 6  score: 5.8 bits;  conditional E-value: 0.0098
                 -EEE--SS.---E-S-HH......H.-TT--EEE-.-.S-----GGG CS
       LRR_4   4 evLdLsnN.qltdiplle......k.lpnLkeLdLsg.Nnlitdlde 41 
                 e L++s++ ++t ++ l+      k  p LkeLd+s+ N    ++d+
  KKY17399.1 542 ERLNISSCrHIT-FDALSkvfdekKeYPCLKELDVSFlN----SVDD 583
                 679999985688.55755566677669********7744....6654 PP

  == domain 7  score: 4.7 bits;  conditional E-value: 0.022
                 SS--EEE--S.S---E-S-...HHH-TT--EEE- CS
       LRR_4   1 pnLevLdLsn.Nqltdipl...leklpnLkeLdL 30 
                 p L++Ld s  N + d+     ++++p L++L +
  KKY17399.1 568 PCLKELDVSFlNSVDDFIVgsiFKSCPALTKLVV 601
                 5799999995266664222455557999999865 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00023      0.46       4      35 ..     149     180 ..     147     181 .. 0.80
   2 ?   -4.1   0.0       8.3   1.7e+04      12      22 ..     605     615 ..     604     617 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00023
  zinc_ribbon_4   4 tCpsCkakyeidd.eklpakgvkvrCskCghvF 35 
                     C++C++++++ + +k  ++g+ + C+kC++ F
     KKY17399.1 149 NCEECGKRFTVTAySKTGPDGG-LLCTKCSKEF 180
                    6**********87366777766.67****9877 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 8.3
  zinc_ribbon_4  12 yeiddeklpak 22 
                    +++ d k+p++
     KKY17399.1 605 FKVKDVKIPKG 615
                    78999999985 PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.9    0.0003      0.59       8      52 ..     146     189 ..     140     223 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0003
                 --SB-TTT--B--SSS--EE-TTT--EE-STTS-EEE.EEGGGTE CS
        FYVE   8 evkkCeiCakkFsllrrrhhCrlCGkvvCekCssklvallekeae 52 
                 + ++Ce+C k+F+++   +     G ++C+kCs++++a   k++ 
  KKY17399.1 146 QLANCEECGKRFTVTAYSK-TGPDGGLLCTKCSKEFIAEEAKNKI 189
                 5689********9865444.345699*******999987744333 PP

>> CxC7  CxC7 like cysteine cluster associated with KDZ transposases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00027      0.54       8      32 ..     136     160 ..     131     180 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
        CxC7   8 dykkefrvPfsliecsecgdifkds 32 
                  ykk+ ++P  l +c ecg+ f  +
  KKY17399.1 136 MYKKQKKLPGQLANCEECGKRFTVT 160
                 6*******************99765 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.6    0.0006       1.2       8      34 ..     150     178 ..     146     182 .. 0.79
   2 ?   -1.1   0.1       1.1   2.1e+03      14      29 ..     553     569 ..     547     570 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0006
  Zn-ribbon_8   8 CeeCghefevlqsis.daplta.CPeCgs 34 
                  CeeCg++f+v + ++  ++    C +C +
   KKY17399.1 150 CEECGKRFTVTAYSKtGPDGGLlCTKCSK 178
                  *********99987754445556999965 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.1
  Zn-ribbon_8  14 efevlqsisdaplta.C 29 
                  +f++l +++d++++  C
   KKY17399.1 553 TFDALSKVFDEKKEYpC 569
                  699****9977766668 PP

>> XPA_N  XPA protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00056       1.1       3      18 ..     149     164 ..     148     165 .. 0.83
   2 ?    2.2   0.3     0.099     2e+02       4      11 ..     173     180 ..     171     182 .. 0.88
   3 ?   -3.0   0.1       3.9   7.9e+03       7      16 ..     569     578 ..     569     580 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00056
       XPA_N   3 kCdeCgkefldSyLld 18 
                 +C+eCgk+f  + +++
  KKY17399.1 149 NCEECGKRFTVTAYSK 164
                 8********9877765 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.099
       XPA_N   4 CdeCgkef 11 
                 C +C+kef
  KKY17399.1 173 CTKCSKEF 180
                 *******9 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 3.9
       XPA_N   7 CgkefldSyL 16 
                 C ke++ S+L
  KKY17399.1 569 CLKELDVSFL 578
                 89999***99 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  13.6   0.00084       1.7     121     235 ..      53     162 ..      34     215 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00084
       CDC45 121 eayealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee.....sddddersrkrrrsepsakklrrqlkkerrkyea 214
                 +   +l+e e+++ e   +e    dd+++e+e+ +++   e+ ee++k+kr++++    +     ++++  +++kr++++++ ++ ++  +++  k+++
  KKY17399.1  53 Q--RRLREAEQQEAEG-VSEAAGADDDDKENESVQSD---EAPEERKKRKRREER----AiqkikQSKEFAKKKKRNEDNEDFEEDDELARSLMYKKQK 141
                 2..2222222222111.11111111112222221111...122222222222222....1222323344444444444443333444445556666666 PP

       CDC45 215 vlekyysqgtsygesvsslmY 235
                 +l    ++++  g+  +++ Y
  KKY17399.1 142 KLPGQLANCEECGKRFTVTAY 162
                 666665555555555555555 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  14.0    0.0034       6.8      59     160 ..      23     122 ..       2     143 .. 0.43

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0034
                 XX...XXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXX CS
    RR_TM4-6  59 ykvvakkseagLgDlseteaeespt..pelkkklaeeeeaeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkkkkakskkkee 155
                  +   +++++ L+D+  +   ++ +   e++++l e  ++++e e  +e    +  ++++e+ +  e+++e  +++++++ee   +k k+ ++ +kk++
  KKY17399.1  23 NANRIRGPQSALTDFLASHNISAVQiqEEHQRRLRE--AEQQEAEGVSEAAGADDDDKENESVQSDEAPEE--RKKRKRREERAIQKIKQSKEFAKKKK 117
                 23334778889***9998887776543444444443..333333333333322222333333333333332..22222222222222222222222222 PP

                 XXXXX CS
    RR_TM4-6 156 aeaee 160
                  ++ +
  KKY17399.1 118 RNEDN 122
                 22222 PP

>> SprA-related  SprA-related family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  18.4     0.004       7.9     100     189 ..      21     118 ..      11     131 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.004
  SprA-related 100 kadfaaifgqeee..........sasaakekeqqkkdeqsqqerekvaqeqkqkqvfaketqeSnaqqsqeEndiaktreqekireqekqaaekaie 186
                   +++ + i+g +            sa  ++e++q++  e++qqe e v++  ++   + ke++  +++++ eE+ + k r++e++ +++kq++e a++
    KKY17399.1  21 RQNANRIRGPQSAltdflashniSAVQIQEEHQRRLREAEQQEAEGVSEAAGADD-DDKENESVQSDEAPEERKKRK-RREERAIQKIKQSKEFAKK 115
                   5555566664444566666676688999*************************99.777777777777777765555.888899999***9999987 PP

  SprA-related 187 aqk 189
                   +++
    KKY17399.1 116 KKR 118
                   765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2225  (0.124101); expected 358.6 (0.02)
Passed bias filter:                      870  (0.0485247); expected 358.6 (0.02)
Passed Vit filter:                       145  (0.00808746); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.50
# Mc/sec: 3811.34
//
Query:       KKY17400.1  [L=1058]
Description: putative ap-3 complex subunit delta [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-88  295.3   0.0    1.1e-87  294.8   0.0    1.2  1  Adaptin_N  Adaptin N terminal region
    7.3e-06   26.1   0.1    0.00056   20.0   0.0    2.7  3  Cnd1       non-SMC mitotic condensation complex subunit 1
    0.00067   19.7   0.4        7.2    7.2   0.0    4.4  4  HEAT       HEAT repeat
     0.0029   18.0   4.3          2    9.0   0.1    5.3  5  HEAT_EZ    HEAT-like repeat


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.8   0.0   2.5e-91   1.1e-87       5     523 ..      24     628 ..      20     629 .. 0.90

  Alignments for each domain:
  == domain 1  score: 294.8 bits;  conditional E-value: 2.5e-91
                 CCHHHHHHCCSSS.-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCCSSSHHHHHHHHHH CS
   Adaptin_N   5 iqqelaeilnsnk.dddekkkeavkkliylialGedvsflffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlkdpnqlirglALrv 102
                  q  l+e++++ + +d   k+ a+ kliyl + G+d+ ++ f+v+++++s ++ +Kr++Yl++++++  ++d+++L+tn l+kDl++p+  ++++ L++
  KKY17400.1  24 LQGALKECRSEIRsPDMDLKATALLKLIYLEMFGHDMTWAAFNVLEVMSSAKILQKRVGYLAAVQIFRPDTDILMLATNLLKKDLTSPSIPVMSMPLSA 122
                 566799999999999999********************************************************************************* PP

                 HCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCT..T-SSHHHHHHHHHHHHHH.HCCCCCCCHHHHHHHCCHH CS
   Adaptin_N 103 LssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikell..sdkdpgvvlaAvalleei.kkndrlllkllpklvrrLc 198
                 L  i +++la +l++++   l++++p vrkk ++++++l  ++p+ lr    ++ik++l  +d++ +v++a++++ +e+  + ++ +l l+p l+  L 
  KKY17400.1 123 LPHIVTSSLALSLLTDLLPRLSHSHPAVRKKTVVTLYRLALVYPETLRVA-WPKIKDKLmdEDEHSSVTAAVINVVCELgWRRPHDFLPLAPRLFDLLV 220
                 *************************************************8.9*****9976666689999999******9666777789******9999 PP

                 HHHHCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCG.CSSCHHHHHHHHHCC.........HCCCCSTHHHCCHHCHHHHHH.SSCCTCHHH CS
   Adaptin_N 199 nllteldpwlqvkiiklltrlarqepeerskkellesllnllq.ssnnaVlletvnliv.........elapknelivlavnaLvrlls.skdenlryv 286
                    +  ++w+ +kiikl+  l++ ep++   k+ll+ l+  +q +s++++l+e++n i+          + +  e++ l++++L  ++  + d+nl+yv
  KKY17400.1 221 ---EGGNNWMAIKIIKLFATLTPLEPRLV--KKLLRPLMGIIQtTSAMSLLYECINGIIqggildatdGIREGEEVANLCISKLRGMIVvEGDPNLKYV 314
                 ...99************************..67**********99**************99877766666666669*********9999899******* PP

                 HHCHHHHHHHHXXTTTT.TTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHT.....TSSXXHH........................ CS
   Adaptin_N 287 aLrtllkivkkepkavq.hldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyv.....kevaded........................ 355
                 aL +++k+v ++p  v  ++d+++ +l+ d d+sirl al+l++++v+++N++ iv+ L+ ++     +++ +e+                        
  KKY17400.1 315 ALVAFNKVVLSHPVLVAvQQDVIMGCLD-DHDISIRLQALELVSGMVSSDNLQPIVNRLMRQLrnspiQNKEEEEilpvatsiqpaadsdgedpaetlt 412
                 ************99999***********.*********************************8554445554444999999999999999********* PP

                 ...............HHHHHHHHHHHHHHHS....CCHHHHHHHHHHHHHTTXXHHH.......HHHHHHHHHHHHHHSTTTSTTC...HHHHCCTCCG CS
   Adaptin_N 356 ...............fksklvkaIgrlaekf....atdaewvldvllellslsgesv.......kdeivevirdliqkvpelheei...iekLaellek 425
                                +++++vk I +++++     ++d+ew++++ll+l +   ++v       ++ i +++rd+ ++v++l+ e+   +e L+ + + 
  KKY17400.1 413 pvrigtksppplpteYRQEVVKRILDVSSRDsyanVSDFEWYIEILLDLVRYVPQTVtaeefdlASRIGYQLRDVAVRVKSLRPEAtraAESLVLVHNR 511
                 ******************************999******************9555554455577999***************98884435555544444 PP

                 XXSHH..........HHHHHHHHHHHTTTTXTT............HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THX....HHHHHHHHH CS
   Adaptin_N 426 iesee..........araaaiWllGeygelvsn........te.sasdllrslaekfvlesekvklqiltalvKlyltspdketqe....kliqlvlsl 501
                    e+          ++ aa+W++Gey++ + +           s   l  s+   +v++  kv++ i  +++  ++  ++  +      + ++++++l
  KKY17400.1 512 ---EKlfppgggglkVLEAAAWIVGEYASDLADppqlldalMHdSTLTLPDSVVATYVQAIPKVFSVIAAEAANIWDAHQQTGI-TlllaRTVNFLERL 606
                 ...333334677766******************99999999666999999999*********9999999999999988864444.35777889999999 PP

                 HHXXSHHHHHHHHHHHHHHCCX CS
   Adaptin_N 502 atssdlevrdRaveylqllssa 523
                 ++  +l+v++Rave+l+l+++a
  KKY17400.1 607 SDHPNLDVQERAVEFLELFRLA 628
                 9999***************987 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.3e-07   0.00056      15     142 ..     128     254 ..     115     270 .. 0.82
   2 ?    2.9   0.0     0.023     1e+02      34     102 ..     308     370 ..     293     414 .. 0.59
   3 ?   -3.2   0.0       1.7   7.4e+03     117     146 ..     455     485 ..     432     491 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.3e-07
        Cnd1  15 vpnlveylvepLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselakll..eDenprVvanalaalteiseksenaiynllpdiisklsdaln 109
                  ++l   l+++L  rL+ ++p VRk +++++ +L  + +++ ++     ++++ l  eDe+++V a ++++ +e+  + +  ++ l p ++  l+   +
  KKY17400.1 128 TSSLALSLLTDLLPRLSHSHPAVRKKTVVTLYRLalVYPETLRVAW--PKIKDKLmdEDEHSSVTAAVINVVCELGWRRPHDFLPLAPRLFDLLV---E 221
                 55666678899999********************999999988876..4555444359999*********************************9...4 PP

        Cnd1 110 ecsewgqitilefLlsyipkdkqeaeslveklc 142
                   ++w  i+i+++ ++ +p + +  ++l+  l+
  KKY17400.1 222 GGNNWMAIKIIKLFATLTPLEPRLVKKLLRPLM 254
                 799*************99999886666655555 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.023
        Cnd1  34 dpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiis 102
                 dp  +  a++++ k++l   v +  + + +  +l+D++ +++  al + + + + +      +l+ i++
  KKY17400.1 308 DPNLKYVALVAFNKVVLSHPVLVAVQQDVIMGCLDDHDISIRLQALELVSGMVSSD------NLQPIVN 370
                 55566667777777766666666666777777777777777766666665555554......2222222 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.7
        Cnd1 117 itilefLlsyipkdkq.eaeslveklcprlq 146
                 i+il  L++y+p++   e ++l+ ++  +l+
  KKY17400.1 455 IEILLDLVRYVPQTVTaEEFDLASRIGYQLR 485
                 6788889999999876578888888877776 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0016       7.2       5      29 ..     139     163 ..     135     165 .. 0.87
   2 !    6.0   0.0    0.0038        17       4      29 ..     336     361 ..     334     362 .. 0.88
   3 ?   -1.7   0.0       1.1     5e+03      16      29 ..     524     537 ..     523     539 .. 0.83
   4 ?    0.8   0.0      0.18   7.9e+02       4      24 ..     602     622 ..     600     624 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0016
                 HHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgalae 29 
                 ll  ls+++p VR+ ++ +L +la 
  KKY17400.1 139 LLPRLSHSHPAVRKKTVVTLYRLAL 163
                 7889*****************9985 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0038
                 HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgalae 29 
                 +++ +l D + ++R  A++ +  +++
  KKY17400.1 336 VIMGCLDDHDISIRLQALELVSGMVS 361
                 6899**************99887765 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHH CS
        HEAT  16 VReaAakaLgalae 29 
                 V eaAa+ +g+ a+
  KKY17400.1 524 VLEAAAWIVGEYAS 537
                 779******99887 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.18
                 HHHHHHT-SSHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaL 24 
                 +l +l  +p+ +V e A++ L
  KKY17400.1 602 FLERLSDHPNLDVQERAVEFL 622
                 44554466********99865 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.1   0.00044         2      33      55 .]     139     161 ..     130     161 .. 0.89
   2 ?    3.4   0.1     0.026   1.2e+02      19      49 ..     327     353 ..     315     357 .. 0.85
   3 ?   -2.2   0.0       1.4   6.4e+03      21      34 ..     364     377 ..     361     380 .. 0.75
   4 ?    1.0   0.0      0.14   6.3e+02       3      14 ..     524     539 ..     523     556 .. 0.58
   5 ?    0.0   0.0      0.29   1.3e+03      30      52 ..     600     622 ..     585     625 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00044
     HEAT_EZ  33 LlalLnddsdeVRaaAagaLgnl 55 
                 Ll++L++++++VR++++ +L +l
  KKY17400.1 139 LLPRLSHSHPAVRKKTVVTLYRL 161
                 89******************986 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.026
     HEAT_EZ  19 pellqplvpeilpaLlalLnddsd.eVRaaAa 49 
                 p l++ ++++i+ +L      d+d ++R +A+
  KKY17400.1 327 PVLVAVQQDVIMGCLD-----DHDiSIRLQAL 353
                 67788899********.....***9*9*9997 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.4
     HEAT_EZ  21 llqplvpeilpaLl 34 
                  lqp v +++++L 
  KKY17400.1 364 NLQPIVNRLMRQLR 377
                 57888888888887 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.14
     HEAT_EZ   3 vRraAawaLGr....l 14 
                 v +aAaw +G+    l
  KKY17400.1 524 VLEAAAWIVGEyasdL 539
                 6689999998732222 PP

  == domain 5  score: 0.0 bits;  conditional E-value: 0.29
     HEAT_EZ  30 lpaLlalLnddsdeVRaaAagaL 52 
                 + +L +l  +++ +V++ A+  L
  KKY17400.1 600 VNFLERLSDHPNLDVQERAVEFL 622
                 5567788888999****999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1058 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.51
# Mc/sec: 6258.24
//
Query:       KKY17401.1  [L=312]
Description: putative tetratricopeptide repeat domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-09   36.6   1.0      0.079   13.8   0.1    5.2  5  TPR_14    Tetratricopeptide repeat
      2e-07   31.4   0.0    0.00052   20.5   0.0    4.1  4  TPR_19    Tetratricopeptide repeat
    3.9e-06   26.6   0.0     0.0025   17.8   0.0    4.3  5  TPR_2     Tetratricopeptide repeat
      2e-05   24.2   0.0    0.00026   20.7   0.0    2.8  4  TPR_1     Tetratricopeptide repeat
    9.9e-05   22.5   0.3       0.01   16.1   0.0    3.2  4  TPR_17    Tetratricopeptide repeat
     0.0013   18.8   0.1       0.28   11.4   0.0    2.5  2  TPR_9     Tetratricopeptide repeat
      0.008   16.4   0.8        6.6    7.1   0.1    4.0  4  TPR_12    Tetratricopeptide repeat
     0.0091   16.1   0.0      0.066   13.4   0.0    2.4  2  TPR_8     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.021   15.5   0.1        1.4    9.6   0.0    3.2  3  TPR_16    Tetratricopeptide repeat
      0.096   13.0   0.1         29    5.1   0.0    3.2  2  TPR_20    Tetratricopeptide repeat
       0.13   11.9   0.0         11    5.8   0.3    3.5  5  TPR_11    TPR repeat
       0.27   11.3   1.0         16    5.8   0.0    3.9  5  TPR_7     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.025        38       4      32 ..      56      84 ..      53      97 .. 0.82
   2 ?    1.6   0.0      0.45   6.7e+02      12      35 ..     103     126 ..      97     135 .. 0.78
   3 !   13.7   0.0     6e-05     0.089       5      43 ..     130     168 ..     126     169 .. 0.90
   4 !   13.8   0.1   5.3e-05     0.079       2      44 .]     161     203 ..     160     203 .. 0.95
   5 ?    2.8   0.0      0.18   2.7e+02      17      39 ..     214     236 ..     206     243 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.025
      TPR_14  4 llalaeallalGdpdeAiallrralalaP 32
                + +l +a+l+ Gd + A  +l+r+ a++ 
  KKY17401.1 56 YEQLFSACLRTGDDKSAHLCLERLTARFG 84
                56899*******************99875 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.45
      TPR_14  12 lalGdpdeAiallrralalaPdda 35 
                  ++ d++  ++ ++++la +P + 
  KKY17401.1 103 QNQSDLESILKEYNAILAENPVNV 126
                 467799999*********999555 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 6e-05
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 ++++ +l   +++ +Ai+   ++l+++P+d e w +la 
  KKY17401.1 130 KRRVTLLQSMQRYTDAITSMVDYLEHFPTDVEGWVHLAN 168
                 6778889999***************************96 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 5.3e-05
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 e +  la ++  +G   +A+  l++al  aP+ + ++ +l++l
  KKY17401.1 161 EGWVHLANLYQSQGMSPQALFSLEEALLIAPNAWNLHARLGEL 203
                 77999***********************************986 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.18
      TPR_14  17 pdeAiallrralalaPddaeawl 39 
                  d+A+ ll +al+++  ++e+  
  KKY17401.1 214 SDDARGLLVDALRRFSRSLELCE 236
                 57888888888888877777654 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.24   3.5e+02      31      61 ..      59      90 ..      46      95 .. 0.83
   2 !   11.1   0.0   0.00029      0.44       4      57 ..     105     158 ..     100     159 .. 0.92
   3 !   20.5   0.0   3.5e-07   0.00052       4      68 .]     139     200 ..     136     200 .. 0.93
   4 ?    0.7   0.0       0.5   7.5e+02       4      31 ..     218     245 ..     214     246 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.24
      TPR_19 31 LAeallalgqldeAealLdalpeedpdd.ary 61
                L  a+l +g+ + A  +L++l + +  + +r+
  KKY17401.1 59 LFSACLRTGDDKSAHLCLERLTARFGATnERV 90
                56799****************99888754666 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00029
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 + d+++ l+ + ++l+e+p n  +r + + +l ++ ++++A+  + +++e++p 
  KKY17401.1 105 QSDLESILKEYNAILAENPVNVPIRKRRVTLLQSMQRYTDAITSMVDYLEHFPT 158
                 5699999***********************************999998888875 PP

  == domain 3  score: 20.5 bits;  conditional E-value: 3.5e-07
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlAkl 68 
                 +++y++A+  +   l++ p + e +  LA+++ ++g   +A   L+++++ +p+   +++L A+l
  KKY17401.1 139 MQRYTDAITSMVDYLEHFPTDVEGWVHLANLYQSQGMSPQALFSLEEALLIAPN---AWNLHARL 200
                 799**************************************************9...77777765 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.5
      TPR_19   4 egdyaeAlalleqalqedpknaearllL 31 
                 +g + +Al+++++ l+   ++++ +++L
  KKY17401.1 218 RGLLVDALRRFSRSLELCEGYLRGLYGL 245
                 5667899999999999888888777766 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.66   9.9e+02      10      27 ..      62      79 ..      61      83 .. 0.87
   2 ?   -3.2   0.0       8.9   1.3e+04      24      31 ..      97     104 ..      96     106 .. 0.68
   3 ?    1.0   0.0       0.4   5.9e+02      12      34 .]     137     159 ..     135     159 .. 0.86
   4 !   17.8   0.0   1.7e-06    0.0025       2      33 ..     161     192 ..     160     193 .. 0.95
   5 ?    0.1   0.0      0.78   1.2e+03      19      32 ..     223     236 ..     217     238 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.66
       TPR_2 10 ayyklgdyeeAleafekA 27
                a+++ gd + A+ ++e+ 
  KKY17401.1 62 ACLRTGDDKSAHLCLERL 79
                68999**********997 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.9
       TPR_2  24 fekAleld 31 
                 +++A++ +
  KKY17401.1  97 YQEAVAQN 104
                 77777665 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.4
       TPR_2  12 yklgdyeeAleafekAleldPnn 34 
                   +++y +A+  +   le+ P++
  KKY17401.1 137 QSMQRYTDAITSMVDYLEHFPTD 159
                 5689*******999999999986 PP

  == domain 4  score: 17.8 bits;  conditional E-value: 1.7e-06
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 e++  l+++y  +g   +Al  +e+Al ++Pn
  KKY17401.1 161 EGWVHLANLYQSQGMSPQALFSLEEALLIAPN 192
                 89*****************************9 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.78
       TPR_2  19 eAleafekAleldP 32 
                 +Al+ f ++lel++
  KKY17401.1 223 DALRRFSRSLELCE 236
                 79999999999986 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.6   6.8e+03      24      33 ..      97     106 ..      97     107 .. 0.73
   2 ?   -0.7   0.0      0.96   1.4e+03      10      21 ..     135     146 ..     134     148 .. 0.85
   3 !   20.7   0.0   1.8e-07   0.00026       2      33 ..     161     192 ..     160     193 .. 0.96
   4 ?   -3.3   0.0       6.4   9.5e+03      24      31 ..     228     235 ..     219     237 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.6
                 HHHHHHHSTT CS
       TPR_1  24 yekALelnPn 33 
                 y++A+  n +
  KKY17401.1  97 YQEAVAQNQS 106
                 8888887765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.96
                 HHHHTT-HHHHH CS
       TPR_1  10 ayfklgkydeAl 21 
                 +++++++y +A+
  KKY17401.1 135 LLQSMQRYTDAI 146
                 5789*******9 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 1.8e-07
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                 + +  l+n+y+++g+  +Al   e+AL + Pn
  KKY17401.1 161 EGWVHLANLYQSQGMSPQALFSLEEALLIAPN 192
                 7899***************************8 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 6.4
                 HHHHHHHS CS
       TPR_1  24 yekALeln 31 
                 +++ Lel+
  KKY17401.1 228 FSRSLELC 235
                 66777775 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         7   1.1e+04       2      12 ..      97     107 ..      96     110 .. 0.78
   2 ?   -1.6   0.0       3.2   4.8e+03       2      32 ..     115     145 ..     114     146 .. 0.73
   3 !   16.1   0.0     7e-06      0.01       6      33 ..     153     180 ..     151     181 .. 0.93
   4 ?    2.3   0.1      0.18   2.7e+02       3      23 ..     184     204 ..     183     218 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 7
      TPR_17   2 ylkaleldPnn 12 
                 y++a++++ ++
  KKY17401.1  97 YQEAVAQNQSD 107
                 89999998776 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.2
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 y   l+ +P n++    + +ll +  ++ +A
  KKY17401.1 115 YNAILAENPVNVPIRKRRVTLLQSMQRYTDA 145
                 7778888999998877777777776666666 PP

  == domain 3  score: 16.1 bits;  conditional E-value: 7e-06
      TPR_17   6 leldPnnadaynnLAelllknGdlmtAr 33 
                 le+ P++++ +  LA+l+ ++G + +A+
  KKY17401.1 153 LEHFPTDVEGWVHLANLYQSQGMSPQAL 180
                 89********************999986 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.18
      TPR_17   3 lkaleldPnnadaynnLAell 23 
                 ++al + Pn ++++  L+el 
  KKY17401.1 184 EEALLIAPNAWNLHARLGELS 204
                 8999**************985 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0026       3.9       3      62 ..     100     159 ..      98     161 .. 0.95
   2 !   11.4   0.0   0.00018      0.28      25      62 ..     156     193 ..     153     200 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0026
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapda 62 
                 a+a+++ d e  l+ ++ +l+ +P  +  r  R  ll+ + ++  A+  +  yl++ p +
  KKY17401.1 100 AVAQNQSDLESILKEYNAILAENPVNVPIRKRRVTLLQSMQRYTDAITSMVDYLEHFPTD 159
                 7899***************************************************98876 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00018
       TPR_9  25 aPddpeerrdRGlllaqlGclsaAladLeaylalapda 62 
                 +P d+e +   + l++ +G   +Al+ Le +l +ap+a
  KKY17401.1 156 FPTDVEGWVHLANLYQSQGMSPQALFSLEEALLIAPNA 193
                 799*******************************9976 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.67     1e+03      54      74 ..      62      82 ..      58      83 .. 0.86
   2 ?   -0.5   0.0         1   1.5e+03      11      24 ..     134     147 ..     129     154 .. 0.81
   3 !    7.1   0.1    0.0044       6.6      51      72 ..     166     187 ..     161     200 .. 0.71
   4 ?    3.2   0.0     0.074   1.1e+02      17      36 ..     219     238 ..     215     248 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.67
      TPR_12 54 lyralgryeeAlelleealai 74
                +++++g+ + A+  le+ +a+
  KKY17401.1 62 ACLRTGDDKSAHLCLERLTAR 82
                5789************98775 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1
      TPR_12  11 avlrrlgrydeAle 24 
                 ++l+ ++ry++A++
  KKY17401.1 134 TLLQSMQRYTDAIT 147
                 56888999999986 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0044
      TPR_12  51 LgrlyralgryeeAlelleeal 72 
                 L+ ly+ +g   +Al  leeal
  KKY17401.1 166 LANLYQSQGMSPQALFSLEEAL 187
                 6677777777777777777776 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.074
      TPR_12  17 grydeAlellekaleiarrl 36 
                 g + +Al+ + ++le+++ +
  KKY17401.1 219 GLLVDALRRFSRSLELCEGY 238
                 66668999999999998766 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.3   3.4e+03      10      25 ..     135     150 ..     133     154 .. 0.79
   2 !   13.4   0.0   4.5e-05     0.066       2      33 ..     161     192 ..     160     193 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.3
                 HHHHTT-HHHHHHHHH CS
       TPR_8  10 iylklgdyeeAkeyye 25 
                 +++++++y  A+ ++ 
  KKY17401.1 135 LLQSMQRYTDAITSMV 150
                 578999***9999875 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4.5e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 e +++l+++y+++g   +A  ++e+al ++p+
  KKY17401.1 161 EGWVHLANLYQSQGMSPQALFSLEEALLIAPN 192
                 78****************************97 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.6   3.9e+03      25      28 ..     102     105 ..      94     126 .. 0.48
   2 ?    9.6   0.0   0.00097       1.4       5      61 ..     134     188 ..     131     195 .. 0.86
   3 ?    1.5   0.1      0.33   4.9e+02      13      30 ..     214     231 ..     206     236 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.6
      TPR_16  25 krdp 28 
                 +++ 
  KKY17401.1 102 AQNQ 105
                 3332 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00097
      TPR_16   5 raalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyraal 61 
                 +++   ++y+dA+     +l+ +   P ++e + +l++++  qg  + A+  l +a+l
  KKY17401.1 134 TLLQSMQRYTDAITSMVDYLEHF---PTDVEGWVHLANLYQSQGMSPQALfSLEEALL 188
                 5678899****************...**************999999988888888877 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.33
      TPR_16  13 yddAaaaleaalkrdpss 30 
                  ddA+ +l  al+r+++s
  KKY17401.1 214 SDDARGLLVDALRRFSRS 231
                 689999999999999655 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0      0.02        29       9      50 ..     113     154 ..     102     156 .. 0.89
   2 ?    4.9   0.0     0.023        34      16      55 ..     154     193 ..     149     245 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.02
      TPR_20   9 aeleaalaanpddldarldlAlallaagryeeAleqLleilk 50 
                 +e  a la+np ++ +r    ++l + +ry +A++ +++ l+
  KKY17401.1 113 KEYNAILAENPVNVPIRKRRVTLLQSMQRYTDAITSMVDYLE 154
                 66778899****************************999886 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.023
      TPR_20  16 aanpddldarldlAlallaagryeeAleqLleilkrdrkw 55 
                 +  p+d++  + lA+++ ++g   +Al  L e l    ++
  KKY17401.1 154 EHFPTDVEGWVHLANLYQSQGMSPQALFSLEEALLIAPNA 193
                 6679999999999999999999999999998877666665 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.36   5.4e+02      16      27 ..      96     107 ..      95     110 .. 0.84
   2 ?   -2.4   0.0       2.6   3.9e+03       8      15 ..     140     147 ..     138     148 .. 0.80
   3 ?    2.9   0.0      0.06        90      25      42 .]     157     174 ..     153     174 .. 0.94
   4 ?    5.8   0.3    0.0076        11       2      37 ..     168     203 ..     167     205 .. 0.92
   5 ?   -2.8   0.0       3.6   5.4e+03      12      32 ..     223     243 ..     218     245 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.36
      TPR_11  16 aYkkAlkldPdn 27 
                 +Y++A++ ++++
  KKY17401.1  96 VYQEAVAQNQSD 107
                 59***9999887 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.6
      TPR_11   8 GkyeeAie 15 
                 ++y++Ai+
  KKY17401.1 140 QRYTDAIT 147
                 799***98 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.06
      TPR_11  25 PdnaeayynLGlayykqG 42 
                 P+++e + +L+++y+ qG
  KKY17401.1 157 PTDVEGWVHLANLYQSQG 174
                 8999************99 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.0076
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGla 37 
                 ++y +qG  ++A+ ++++Al + P+  +++  LG++
  KKY17401.1 168 NLYQSQGMSPQALFSLEEALLIAPNAWNLHARLGEL 203
                 7888999999***********************975 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 3.6
      TPR_11  12 eAieaYkkAlkldPdnaeayy 32 
                 +A+ ++++ l+l++ + + +y
  KKY17401.1 223 DALRRFSRSLELCEGYLRGLY 243
                 688899999999876655555 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.3   3.4e+03       7      24 ..      61      78 ..      56      82 .. 0.76
   2 ?   -2.6   0.0       5.1   7.6e+03      14      23 ..      96     105 ..      94     112 .. 0.63
   3 ?   -0.1   0.0      0.83   1.2e+03       9      20 ..     136     147 ..     134     148 .. 0.86
   4 ?    5.8   0.0     0.011        16       3      26 ..     164     187 ..     163     193 .. 0.81
   5 ?   -1.0   0.0       1.6   2.5e+03      12      24 ..     225     237 ..     219     250 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.3
       TPR_7  7 rlysrlGdyeeAielyeq 24
                +++ r Gd + A  ++e+
  KKY17401.1 61 SACLRTGDDKSAHLCLER 78
                578899999888666666 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.1
       TPR_7  14 dyeeAielye 23 
                  y+eA+  ++
  KKY17401.1  96 VYQEAVAQNQ 105
                 5777776544 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.83
       TPR_7   9 ysrlGdyeeAie 20 
                  +++++y +Ai+
  KKY17401.1 136 LQSMQRYTDAIT 147
                 6899******97 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.011
       TPR_7   3 lnLarlysrlGdyeeAielyeqsL 26 
                 + La+ly+++G   +A+  +e++L
  KKY17401.1 164 VHLANLYQSQGMSPQALFSLEEAL 187
                 68*********9999987777754 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 1.6
       TPR_7  12 lGdyeeAielyeq 24 
                 l+++++ +el+e 
  KKY17401.1 225 LRRFSRSLELCEG 237
                 6777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      603  (0.0336327); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2124.55
//
Query:       KKY17402.1  [L=354]
Description: putative tpr repeat protein oca3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.076   12.3   2.0       0.11   11.8   2.0    1.1  1  Csa1           CRISPR-associated exonuclease Csa1
          3    6.2  27.6        4.2    5.8  27.6    1.1  1  Borrelia_P83   Borrelia P83/100 protein
        5.5    5.6   7.9        7.2    5.2   7.9    1.1  1  Ndc1_Nup       Nucleoporin protein Ndc1-Nup
        5.9    6.7  19.2        9.2    6.0  19.2    1.2  1  MAT1           CDK-activating kinase assembly factor MAT1
        8.1    6.2  12.6         24    4.7  12.6    1.8  1  NACHT_N        N-terminal domain of NWD NACHT-NTPase
        9.2    6.0  13.9         14    5.5  13.9    1.2  1  PIN_8          PIN like domain


Domain annotation for each model (and alignments):
>> Csa1  CRISPR-associated exonuclease Csa1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.0   3.8e-05      0.11      57     165 ..      37     149 ..      14     155 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.8e-05
        Csa1  57 tkRdvYLkrvlgvrgeeekklllGaaiHeavakaleelkkliysgekldsslerllvadeivalledviekakelykylasrvsaelsevr....skfe 151
                 t+ +  Lk++++   ++++++++ +   ea +ka+e++kk +++++ ld++l++   a + ++  ++++e+a++ +k l +   a  + ++    ++ +
  KKY17402.1  37 TSHEDTLKMMKELFEKQQQQIEERDKAKEAERKAIEDAKKAAEERAALDKKLQEEAAAAAKAEGDKKLAEAAEKAAKELQEAKDAAEKALKdakeAAEK 135
                 555556999***************************************999998888777776666666666666666655555554444422224445 PP

        Csa1 152 katedsvaarviPv 165
                 +  e+ +aa+v+P 
  KKY17402.1 136 ETAEKVAAAKVVPA 149
                 55666677778885 PP

>> Borrelia_P83  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  27.6    0.0014       4.2     214     317 ..      44     145 ..      35     182 .. 0.61

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0014
  Borrelia_P83 214 raqvlkeeldkkqkdadkakkkadtaednadkqrkevreklqeaknlpepadv.sskkedkkvaeekkreiekaqkeikkkdeeakkakdakaedlk 309
                   +    ke  +k+q+++++ +k  +  +++++  +k ++e+   +k+l+e+a+   +++ dkk+ae   + +    +e+k ++e+a+k   ++ae+  
    KKY17402.1  44 KMM--KELFEKQQQQIEERDKAKEAERKAIEDAKKAAEERAALDKKLQEEAAAaAKAEGDKKLAEAAEKAAKE-LQEAKDAAEKALKDAKEAAEKET 137
                   333..55556666666666666666666777777777777776888776665505666799999665554444.56666666666665555555544 PP

  Borrelia_P83 310 keskaeek 317
                    e  a  k
    KKY17402.1 138 AEKVAAAK 145
                   44333333 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   7.9    0.0024       7.2     356     466 ..      30     141 ..       9     197 .. 0.44

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0024
    Ndc1_Nup 356 papkaaps.........kapknkasapvkelprlsksplkkkddeifgnsltaeaspkssssskegvekalsslakspgqspsptarlsprarklleka 445
                 pap+a+++         k++ +k++++++e+ + ++++ k           +a++++    +  +++++  +++ak+ g++    a+++++a+k+l++a
  KKY17402.1  30 PAPSAPSTshedtlkmmKELFEKQQQQIEERDKAKEAERKAI-----E---DAKKAAEERAALDKKLQEEAAAAAKAEGDK--KLAEAAEKAAKELQEA 118
                 112222213333333333333333333333333332221111.....1...111111112223333333333334444333..2333334555555555 PP

    Ndc1_Nup 446 ksrlls..keqkealsestikkk 466
                 k+++ +  k +kea++++t++k 
  KKY17402.1 119 KDAAEKalKDAKEAAEKETAEKV 141
                 55444433233333333333333 PP

>> MAT1  CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  19.2    0.0031       9.2      64     182 ..      40     162 ..      36     181 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0031
        MAT1  64 eeTekkleqYekenkelIlknkeklkqeeeeleeleelekeekeekrkeekqe....eeeekekkekakeelideLatsskdaeeiiekvkkkakkkks 158
                 e+T k +++  ++ +++I+++ + +++e++++e+++++ +e  +  +k+++++    ++e  +k ++a e+  +eL++++  ae+ ++  k+ a+k+++
  KKY17402.1  40 EDTLKMMKELFEKQQQQIEERDKAKEAERKAIEDAKKAAEERAALDKKLQEEAaaaaKAEGDKKLAEAAEKAAKELQEAKDAAEKALKDAKEAAEKETA 138
                 78999999999999******************999988777666555544443011133444455667889999******************9999988 PP

        MAT1 159 sekekleelnkelkkkatkfssgi 182
                 ++  +++ +  + kk + kf+ +i
  KKY17402.1 139 EKVAAAKVVPAVEKKAPIKFKDAI 162
                 888888888888888777777665 PP

>> NACHT_N  N-terminal domain of NWD NACHT-NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  12.6    0.0079        24      17     103 ..      48     133 ..      22     135 .. 0.63

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0079
     NACHT_N  17 elvkeYekilseeeekesskkeeeseekeeeseeekrqeqlkrlvek...glkrvekkkkakegiaeaaevvlavkdlideavkaspeaa 103
                 el ++ ++ +    e+++++ke+e ++ e+++++ ++++ l++  ++   + +++e +kk+ e++++aa+ ++++kd  ++a+k + eaa
  KKY17402.1  48 ELFEKQQQQI----EERDKAKEAERKAIEDAKKAAEERAALDKKLQEeaaAAAKAEGDKKLAEAAEKAAKELQEAKDAAEKALKDAKEAA 133
                 2222222222....222223333333333334444444455544443111445777888***************************9998 PP

>> PIN_8  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  13.9    0.0047        14      40     147 ..      45     151 ..      42     167 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0047
       PIN_8  40 valEfqrnresviskekkayedlekeleklkkaaekkleealkkwakkkald.teelrkelkkqleelkeelkaeleelkksskadkeedpilkkleel 137
                 +++E  ++++++i+++ ka+e  +k++e++kkaae+ +++++kk ++++a + + e  k+l ++ e++ +el++ +++++k+ k+ ke    +++ e++
  KKY17402.1  45 MMKELFEKQQQQIEERDKAKEAERKAIEDAKKAAEE-RAALDKKLQEEAAAAaKAEGDKKLAEAAEKAAKELQEAKDAAEKALKDAKE-AAEKETAEKV 141
                 688988999999999999999999999999999995.333444333333333577778888888888888888888888888877763.3333334444 PP

       PIN_8 138 legkigeals 147
                    k+ +a++
  KKY17402.1 142 AAAKVVPAVE 151
                 5555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3062  (0.170785); expected 358.6 (0.02)
Passed bias filter:                      986  (0.0549947); expected 358.6 (0.02)
Passed Vit filter:                       236  (0.013163); expected 17.9 (0.001)
Passed Fwd filter:                        50  (0.00278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.49
# Mc/sec: 2172.99
//
Query:       KKY17403.1  [L=1258]
Description: putative synaptojanin 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-67  226.1   0.0    1.2e-66  225.3   0.0    1.4  1  Syja_N    SacI homology domain


Domain annotation for each model (and alignments):
>> Syja_N  SacI homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.3   0.0   6.4e-71   1.2e-66       1     320 []      22     345 ..      22     345 .. 0.81

  Alignments for each domain:
  == domain 1  score: 225.3 bits;  conditional E-value: 6.4e-71
      Syja_N   1 ygilGlirllsgsyllvitkreevgtlkgkkeiykitevellplsseeeaekalkslkaktekkkeekeleekllklleklfessgsfYFsydlDltrs 99 
                 +g lGli+l+++ +++v+t++ +   +    + y   e + +p ss ++++       +     ++ ++ +e+  + l k + s+g fY+s d+Dlt++
  KKY17403.1  22 HGTLGLITLNNDVFICVVTDCLNRPDY---DNMYYGREPNPYPGSSFSTDD------VDYGGGYDQGDSAAEHPFAAL-KKLLSNGFFYYSVDFDLTSR 110
                 688889998888999999988777666...367777788877754442221......122223333333344445566.445589************** PP

      Syja_N 100 lqrqlekssesskslplweraderFvWNrhllkpli.........ea...eldswllpviqGfveqsklkls..ksqkekekkevtltlisRrsrkraG 184
                 lq++++++  +++    +   de  +WN+++++pl+         e+   +++++l++vi+Gfv++++++ +  +  +++++   +lt+isR s +raG
  KKY17403.1 111 LQHRANDD-AKFD----IGSLDEGLLWNSYMIEPLLqfrsrlvdhERdalDQSQILTSVIRGFVKTITVPPAsaPLRRQVSNLPSSLTVISRLSARRAG 204
                 ****9974.3333....3468*************886666666551177899************9877765555334447777889************* PP

      Syja_N 185 tRylrRGiddeGnvANfvEtEqilevessekeskilSfvqiRGSiPlfWsqeptlky.kpkirierseeenleafkkHfekllkrYgkvvvvnLl.ekk 281
                 tR+++RGidd+GnvANfvEtE+i+++    + + ++S+vqiRGS+P+fW+++++l   ++ki+i+r  e++++af+kHfe l   Yg v+vvnLl e+k
  KKY17403.1 205 TRFNSRGIDDDGNVANFVETETIFWS----PAGVCFSYVQIRGSVPIFWESSSSLIPgQQKIQITRPAEATQPAFDKHFEMLELAYGGVHVVNLLtEEK 299
                 *************************4....6789*******************87768*************************************9999 PP

      Syja_N 282 grEkkLgeayekavkklnkle........kekkklkyveFDfhkeck 320
                 + Ek+L+++++ ++++++  +        +e++ ++ + +Dfh e++
  KKY17403.1 300 PGEKELSDRFHYHIDRSSL-QrhgekgheSEHDLIRETRYDFHVETR 345
                 **************99985.33699***989999*********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.56
# Mc/sec: 6766.08
//
Query:       KKY17404.1  [L=377]
Description: putative isocitrate dehydrogenase subunit 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-85  286.3   0.0    4.1e-85  286.0   0.0    1.0  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase
  ------ inclusion threshold ------
       0.13   11.7   0.0       0.22   11.0   0.0    1.3  1  Copine    Copine


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.0   0.0   4.6e-89   4.1e-85       1     348 []      42     369 ..      42     372 .. 0.93

  Alignments for each domain:
  == domain 1  score: 286.0 bits;  conditional E-value: 4.6e-89
                 EEEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE---TH.HHHHHHSSSS-HHHHHHHHHSSEEEEEE---CS.SSSSSHHHHHHHHHHHTTEEEE CS
      Iso_dh   1 kiallegdgiGpevveaalkvlkaakekaglelefeevdvGg.aaidetgeplpeetleaikeadvvllgavgtpk.ekevrpengLlaLrkeldlfan 97 
                 +++l++gdgiG ev e+++ ++ka +      +e+e+vdv+g  + d++ e l  e+++++k+++  l+g + tp  ++++++ n  +aLr+eld++a 
  KKY17404.1  42 TVTLIPGDGIGAEVAESVKTIFKADN--V--PIEWEQVDVSGvDSGDKHSEDLFRESISSLKRNKLGLKGILHTPIeRSGHQSFN--VALRQELDIYAS 134
                 589********************988..5..59******96626889****************************98899*****..************ PP

                 EEEEE-BCCTTCCSSBTHHHHCT-EEEEEEE-SSCGGCSSEEEEETTG.GGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTTHHHH.H CS
      Iso_dh  98 lrpvkvfeklkvksplkrevveevdlvivReltggiYfgeekekkgsifteevavdtklyseeeieriaraafelAlkrgkkkvtlvdKanvlksse.l 195
                 +  +k ++  ++++       ++vdl+i+Re+t+g Y+g e++  +      v+ ++k ++++ +eria++af  Al++++kkvt+++Kan++k ++ l
  KKY17404.1 135 IVLIKNIP--GYQTR-----HNNVDLCIIRENTEGEYSGLEHQSVNG-----VVESLKIITRAKSERIAKFAFSFALANNRKKVTCIHKANIMKLADgL 221
                 98888883..33333.....357*******************99997.....899******************************************99 PP

                 HHHHHHHHHCCTTTTSEEEEEEHHHHHHHHHHSGGGGSEEEE-HHHHHHHHHHHHHHTTSGCC-EEEEEETSS-EEEEE.SS---CCCTTSS-S-THHH CS
      Iso_dh 196 wrkiveevaeeeypdielehqlvDsaamqlvkspkqfdVivtkNlfGDilSDeaaalvGslGllpSaslgekkvaifEa.vHGsapdiagkdkaNpiav 293
                 +r+++++v e +yp i +++++vD+a mq+v +p+qfdV+v++Nl+G ilS   aalvG+ G++p+a++g + va+fE+ +     di gkd+aNp+a+
  KKY17404.1 222 FRNTCKKVSE-DYPSIDYNDMIVDNASMQAVSRPQQFDVMVMPNLYGGILSNIGAALVGGPGIVPGANMG-RDVAVFEPgCRHVGLDIKGKDQANPTAM 318
                 9999999999.***********************************************************.68*****95455667************* PP

                 HHHHHHHHHHTTT-HHHHHHHHHHHHHHHHH.TSCCHHHCTTSTCCCHHHHHHHHH CS
      Iso_dh 294 ilSaalmLryslgleeaAdkiekAvekvlea.givTkDlageaakevstsefgdav 348
                 ilS +++Lr+ lgl+++A++i kAv +v+ + +++T+D++g+a    +t+ef+ av
  KKY17404.1 319 ILSGSMLLRH-LGLDDHANRISKAVYDVIGDgKVRTRDMGGNA----TTHEFTRAV 369
                 **********.*******************9899*********....888888765 PP

>> Copine  Copine
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.4e-05      0.22      94     138 ..      27      70 ..       5      91 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.4e-05
      Copine  94 kvakiaeasakeasqYfvLliitDGvvtdmketidaivaAsklpl 138
                   ++i +  +k  ++Y v li  DG+ ++ +e++++i +A + p+
  KKY17404.1  27 VQSDIFK-PTKYGGKYTVTLIPGDGIGAEVAESVKTIFKADNVPI 70 
                 2333333.478899***************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.53
# Mc/sec: 2121.76
//
Query:       KKY17405.1  [L=242]
Description: putativedimethyl-8-ribityllumazine synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-56  188.6   0.2    2.6e-55  186.1   0.2    1.8  1  DMRL_synthase  6,7-dimethyl-8-ribityllumazine synthase


Domain annotation for each model (and alignments):
>> DMRL_synthase  6,7-dimethyl-8-ribityllumazine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.1   0.2   1.4e-59   2.6e-55       1     139 [.      37     233 ..      37     235 .. 0.96

  Alignments for each domain:
  == domain 1  score: 186.1 bits;  conditional E-value: 1.4e-59
                    TEEEEEEEESTTHHHHHHHHHHHHHHHHHCTTSSCCEEEEEESSCCCHHHHHHHHCTS...................................... CS
  DMRL_synthase   1 glriaiVvarfneeitdkllegaldelkeagvaeenidvvtVPGafElplaakklaes...................................... 58 
                    glri+iV+ar+n++++d+l++ga+++l eagv+eeni++ +VPG++Elp+a+++++++                                      
     KKY17405.1  37 GLRIGIVHARWNDTMIDALVTGAKKKLLEAGVKEENIVLESVPGSYELPFAVQRFYSAsqtqsttsvisgaagsllsgtadllgasastenlqaqa 132
                    68*******************************************************7789999******************************** PP

                    ..............TT-..SEEEEEEEEE--SSCHHHHHHHHHHHHHHHHHHHCTS-EEEEEEEESSHHCCHHCCT.STC.....CCHHHHHHHHH CS
  DMRL_synthase  59 ..............sky.ldavialGvvirGetphfeyvaeavskglmrvsldtgvPvifgvltvdteeqalerag.gka.....gnkGeeaaeaa 133
                                  +   +da+ia+Gv+i+Get+hfey+a+avs+glmrv+ldtgvPv+fg+ltv +eeq l rag gk+     +n+Ge++++aa
     KKY17405.1 133 qpgskpaessstalK-TpFDAIIAIGVLIKGETMHFEYIADAVSHGLMRVQLDTGVPVVFGLLTVLNEEQGLMRAGiGKGekgagHNHGEDWGSAA 227
                    ***********9854.458********************************************************96555899************* PP

                    HHHHHH CS
  DMRL_synthase 134 lemanl 139
                    +e+a+ 
     KKY17405.1 228 VELASK 233
                    ***986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.50
# Mc/sec: 1459.53
//
Query:       KKY17406.1  [L=291]
Description: putative proteasome subunit alpha type [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-47  160.8   0.3    4.6e-33  114.3   0.0    2.4  3  Proteasome      Proteasome subunit
      3e-12   46.0   0.0    6.2e-12   45.0   0.0    1.6  1  Proteasome_A_N  Proteasome subunit A N-terminal signature
  ------ inclusion threshold ------
        1.3    9.0   9.3       0.16   11.8   3.7    2.3  2  DUF5633         Family of unknown function (DUF5633)


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   0.0   7.7e-37   4.6e-33       1     116 [.      31     144 ..      31     149 .. 0.98
   2 !   44.4   0.0     2e-15   1.2e-11     115     190 .]     169     245 ..     163     245 .. 0.95
   3 ?   -3.9   0.1       1.4   8.1e+03     160     173 ..     264     277 ..     262     288 .. 0.70

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 7.7e-37
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHC CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrs 99 
                 v++G+t+vGi++kdgvvla++k +t  skll++   +Ki+ +d+++g++ +Gl++D++ +v+rar ea+++r +y++pip+  l++r+ +++qayt++s
  KKY17406.1  31 VENGGTAVGIRCKDGVVLAVEKIIT--SKLLKPGANKKISTVDRNVGIVSSGLVPDGKHFVSRARDEASSWRRTYKTPIPTASLAQRMGSYAQAYTLYS 127
                 689**********************..************************************************************************ PP

                 TTTTTSEEEEEEEEETT CS
  Proteasome 100 grrpfgvslliagvdee 116
                 ++rpfg+  +i+g+d e
  KKY17406.1 128 SVRPFGITSIIGGWDSE 144
                 ***************76 PP

  == domain 2  score: 44.4 bits;  conditional E-value: 2e-15
                 TTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHH..STTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEEE CS
  Proteasome 115 eeggpeLyqidpsGsyieekdavaiGsgseaaktalekey..kedltleeavelavkalkealerdklsgknievavi 190
                 ++ggp+Ly+i+psG y+++ + +a+G+g++aak+ lek+     +l+l+++v  a ++++ a+e+ k +  ++ev++i
  KKY17406.1 169 KTGGPFLYMIEPSGLYWGY-YGAATGKGRQAAKAELEKLDlpAGNLSLKQGVMEAARIIYIAHEDSKDKDFELEVTWI 245
                 799****************.8*******************9999********************99999999999986 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHH CS
  Proteasome 160 leeavelavkalke 173
                 leea+  a+kal+ 
  KKY17406.1 264 LEEAEAAAKKALEG 277
                 57888888888864 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0     1e-15   6.2e-12       1      23 []       8      30 ..       8      30 .. 0.99

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 1e-15
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YD+s ++FSPdGR fQVEYA kA
      KKY17406.1  8 YDLSNSVFSPDGRNFQVEYAVKA 30
                    **********************9 PP

>> DUF5633  Family of unknown function (DUF5633)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3      0.37   2.2e+03      11      19 ..     197     205 ..     194     208 .. 0.80
   2 ?   11.8   3.7   2.7e-05      0.16       7      20 ..     265     278 ..     263     280 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.37
     DUF5633  11 kAAkkALen 19 
                  AAk  Le+
  KKY17406.1 197 QAAKAELEK 205
                 79***9998 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.7e-05
     DUF5633   7 eeAekAAkkALend 20 
                 eeAe+AAkkALe d
  KKY17406.1 265 EEAEAAAKKALEGD 278
                 9**********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 1805.01
//
Query:       KKY17407.1  [L=453]
Description: hypothetical protein UCRPC4_g05651 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.4e-22   77.5   0.6    1.5e-21   76.6   0.6    1.4  1  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.6   8.6e-26   1.5e-21       2     380 ..      31     447 ..      30     451 .. 0.80

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 8.6e-26
  Fungal_trans_2   2 lldyyldnvapllspvpes.......snpfrkvllplalsnkallhallalsafhlqskgpkdslereakrykslalkelqealaelsstlsrne 89 
                     lld++ ++v p l   ++        s p  +++  +a   ++++hal+a++a+ l+++++ +  + +a+++++++   lq +++  +  +s   
      KKY17407.1  31 LLDHFRRRVWPQLAQLDSVsgtsdrsSYPSEDIIERTASVFRPCYHALMAVAATCLAHQNGVQ--RLDALQHYQQVPIALQMEIRSAEDVSS--- 120
                     789999999995544444444467767777777777888888**************9999999..89*************************... PP

  Fungal_trans_2  90 kykdiLaaiLllcsieissgdvsd...wrvhLeaatsliksrggskasssslsskarfllrifayldilssttlg..........rgpsfpseey 171
                       +  + +  ll ++ei+s +++    w +hL++  ++   r+ +        ++ +f+  +   +d+ + ++ +          ++   p  +y
      KKY17407.1 121 --DGAFLTHYLLLVYEIVSAEMGGanlWSQHLNQLNKFTLLRQDT-----LGGERFPFITWWTFQIDLYALLSGSgpgdyvenmlKNDIVPLPSY 208
                     ..9999999************999999****************99.....888999***************999978888888876666666666 PP

  Fungal_trans_2 172 ekllenkkeesdsgldp......lmGcsnslilliseisrLarekrsarkd.......seleplsil.eeaseleqrll.swkprssdlepdlde 251
                          +++  s ++ ++      l+ ++ +++ l ++++ La+e+r  ++          + +++i+ +++ e++++l+  w  ++  + +++++
      KKY17407.1 209 HLAPLGPDGMSLIYPEEadtlplLLQLNYEVVMLAARLGLLAKELRIGTSIttfagpsALRVDTCIRnRRIFEIQEALRrMWTAPNILH-IQQSA 302
                     666666556666664444446669************************9999*****95555555541455677777775566664444.44444 PP

  Fungal_trans_2 252 terassls..kdltelfrlaaliylyrlv.lglpps.....spevqelvkkllellellpsspv.aiasLlWplFiaGceavdeddRdfvrrrle 337
                     +  + +++  + ++++   a++iy +++  +g+  +     + e+  +v+++l++ e + ss++   + +++plF+aG++  +++++++ ++++ 
      KKY17407.1 303 DLLPPRPKrlLEHANALFRACIIYSHTSMwPGQRIDtgqqyDTEIAISVQEILQIAEAIVSSGRlELRFIIFPLFMAGIATGSGPEKMMALDLMM 397
                     4444444447788999889*****885555555555778899******************99999****************************** PP

  Fungal_trans_2 338 eleqsrl.gnvrrarqvleevWrrrdd......geekidWrdvmekkgwe 380
                     ++e+ ++  n + +rq+l+++ +r+ +      ++  + W dvm +++  
      KKY17407.1 398 TMEKESIgTNTTATRQLLQTIYERQNQrfmsvgHSLDVCWKDVMLENDVQ 447
                     ***555589*****************4444443555888*****776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3647.23
//
Query:       KKY17408.1  [L=466]
Description: putative protein rds1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-17   61.6   0.4    1.5e-16   60.9   0.4    1.3  1  Ferritin_2  Ferritin-like domain
  ------ inclusion threshold ------
       0.21   11.5   2.1       0.57   10.1   2.1    1.7  1  DUF2574     Protein of unknown function (DUF2574)
        1.9    8.9   5.6       0.86   10.0   2.9    1.8  2  CYYR1       Cysteine and tyrosine-rich protein 1


Domain annotation for each model (and alignments):
>> Ferritin_2  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.4   2.4e-20   1.5e-16       2     133 ..     122     251 ..     120     254 .. 0.96

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 2.4e-20
  Ferritin_2   2 dvdiLnfAlnlEyleaafYtaalegasldd..kalldaevrevaeeiakheeaHveflkaaleGaaavakptfdfafdpfadeksflalaavlEdvgvs 98 
                 d + L  Al  Ey+e + ++ +l+++s +d  +a+l+ae+r +++ +a++e++H++++++ l Ga+a  ++t+++   p ++ ++++++++ l + g s
  KKY17408.1 122 DYESLALALYQEYIELDLFHWGLATFSVEDfeAAGLNAEDRYLLQFMAEQEVGHATLISNIL-GAEAPVQCTYNY---PATNVREYIDFSQKLTRFGES 216
                 66789999999***************************************************.9999999*****...********************* PP

  Ferritin_2  99 AYlgaapllsnkelltaaasIlsvEArHaavirtl 133
                 +  g  ++l+ +e+ ++ ++  s+EAr++ ++r+ 
  KKY17408.1 217 GVYGFLNHLNAREVGQLLLQSISTEARQQMIFRQF 251
                 *******************************9987 PP

>> DUF2574  Protein of unknown function (DUF2574)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.1   9.6e-05      0.57      10      53 ..      14      57 ..       6      76 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 9.6e-05
     DUF2574 10 ivlayGlsspvfasdtatltisGkvtaptcsaevvnaqlqqrcG 53
                ++ +  l+ p  +s t+t++ + +vtap  s+++ +a      G
  KKY17408.1 14 VFATKSLAIPFVSSATTTVSSAASVTAPVVSTQITEATHGPYTG 57
                6677889**************************99987665555 PP

>> CYYR1  Cysteine and tyrosine-rich protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.9   0.00014      0.86      87     140 ..      60     113 ..      50     119 .. 0.85
   2 ?   -2.5   0.0       1.1   6.5e+03     126     146 ..     341     362 ..     331     363 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00014
       CYYR1  87 trvgvlraayintvsqsypgapppysydyemefaadlpppytptpprsaqyspp 140
                 t  g ++++ +++   + p  p  y y  + + + d p pytp+    ++ s+p
  KKY17408.1  60 TTTGAISTSILAASVPALPPGPDAYKYPSDGQLHGDEPTPYTPSGGLGTNGSAP 113
                 567889999888877789999999*******************98887776665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.1
       CYYR1 126 pytpt.pprsaqysppppypgn 146
                 p + + p  + ++s p  ypg 
  KKY17408.1 341 PLSDCnPAITQNRSIPLSYPGR 362
                 4444404456788999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3365.58
//
Query:       KKY17409.1  [L=798]
Description: putative mfs transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-33  116.1  20.4    4.5e-32  111.4  14.3    2.1  2  MFS_1     Major Facilitator Superfamily
    1.5e-07   30.7   0.4    1.5e-07   30.7   0.4    3.2  3  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4  14.3     5e-36   4.5e-32       4     346 ..     307     729 ..     304     735 .. 0.74
   2 !    8.8   1.7   7.6e-05      0.68     212     277 ..     721     785 ..     712     796 .. 0.77

  Alignments for each domain:
  == domain 1  score: 111.4 bits;  conditional E-value: 5e-36
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgaga 101
                  ++++++a+++++++l   +++d g++   ++  ++  +l+++++ l++ +l+  +G r+v+l++ll++ + ++++ + + +   +++  +lqG++++ 
  KKY17409.1 307 YTLMVGIASAAIYSVLE-PISDDTGLTLNDLNSGTGYMFLFFGWGCLIWQPLALQYGKRPVYLFSLLATTAIMVWAPY-TKSNgQWIANKILQGFFGAP 403
                 56788889999999998.89***************************************************9444446.666669************** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll.............peepperkrkspkee 187
                 + +++ + ++d++   erg ++++++++ + +  ++p+++g++++s gW++v y +ai++ ++f++ ++++              e             
  KKY17409.1 404 IESLCEISVTDIYFTHERGHYMAIYALFLAGSNFFAPIISGFISDSQGWQWVLYWCAIFCGIGFIFCYFFMeetnyhrdtitglEE------------- 489
                 *****************************************************************866666666666666665533............. PP

       MFS_1 188 e.........................................................kgtgpaplvp...........awkallkdpvlwillialll 218
                 +                                                         +                    + +++l++  + + + ++++
  KKY17409.1 490 SqpdsdqpsptekganttdtekdpgddqspaqtepstpeegisgavasykkktyaqklA--------LfqpgtftrpnrLGGMMLRPLIF-MSFPVIFY 579
                 34444444444445888888999999999988888888888888888776554333330........13233333344324444444433.57777777 PP

       MFS_1 219 fffgfsglltllpl........ylqevlglsglllaglllallalvgailallagrlsdr............lgrrrrlllallllllaalglallavt 297
                 ++f + + l+++ +        +  + ++++ + ++gl +  + +++++++  +g + dr            + ++ rl+l+ ++lll+  gl+l++v 
  KKY17409.1 580 AGFSYGSNLVWFNVlnatasliLGGKPYNFA-ASMVGLSYISPLIGVIVGSAYTGPFGDRfvikmarwnkgiMEPEHRLWLFSASLLLIPGGLLLWGVG 677
                 7777777555555522222223367778888.57777666666666666699********999999988888888************************ PP

       MFS_1 298 ssavllllvlvl....iGfglgfv...fpsllalasdlappeeagtasglfntags 346
                   + +++++lv+    i ++   +   ++s+ ++++++   + +g a+  + ++++
  KKY17409.1 678 AAQEVHWFGLVFamgvIALTN--TigiQVSISYCVDSYR--DLSGEAMITVIIVRN 729
                 666666665555424444422..2333555555555555..777766655555554 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 7.6e-05
       MFS_1 212 llialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrl 277
                 +++++++  ++ +++ + ++ + ++++g+ + ++++++ +l++++++ +++ +g+ +++ + +r++
  KKY17409.1 721 MITVIIVRNTMSFAIGYGITPW-VSDMGYQNTFITAAFAGLAQVLTFLIFVKWGKKMRKASVHRYW 785
                 4444444444445555555555.9******77999************************8887776 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.4   1.6e-11   1.5e-07      61     195 ..     349     478 ..     295     521 .. 0.88
   2 !    2.0   0.5    0.0084        76      44      73 ..     610     639 ..     560     644 .. 0.77
   3 ?    0.7   2.3     0.021   1.9e+02     332     374 ..     704     744 ..     680     785 .. 0.60

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.6e-11
                 HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  61 iGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifgl 159
                  G+l+  +l+  +G+++++l++ +   + ++++++a+ ++s  + i+ ++l G++   +  l+ + +  i  ++ Rg  + +y l+++   ++a i+  
  KKY17409.1 349 WGCLIWQPLALQYGKRPVYLFSLL---ATTAIMVWAPYTKSNGQWIANKILQGFFGAPIESLCEISVTDIYFTHERGHYMAIYALFLAGSNFFAPIISG 444
                 5999999*************9976...5678999999999**********************************************************9 PP

                 HHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS---H CS
    Sugar_tr 160 glnktsnadgwrillglqlvpallllill.lflPESP 195
                 +++++++   w++ l+ ++++  + +i+  +f++E+ 
  KKY17409.1 445 FISDSQG---WQWVLYWCAIFCGIGFIFCyFFMEETN 478
                 9999999...999999999998888887736677773 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.0084
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHT CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrf 73 
                 +++ +gl+  + l+G i+Gs ++g++gdrf
  KKY17409.1 610 AASMVGLSYISPLIGVIVGSAYTGPFGDRF 639
                 6678899999******************98 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.021
                 HHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHH CS
    Sugar_tr 332 vilgivalllvakskaasivaivfialfialfalgwgpvpwvl 374
                 v ++++++ +++ s   + +++v i+  ++ fa+g g +pwv 
  KKY17409.1 704 VSISYCVDSYRDLS--GEAMITVIIVRNTMSFAIGYGITPWVS 744
                 33445555555553..333333444445667777777777763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.54
# Mc/sec: 4482.61
//
Query:       KKY17410.1  [L=371]
Description: putative fre ferric reductase-like transmembrane component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-18   65.9   0.0    1.9e-17   63.8   0.0    1.8  2  NAD_binding_6  Ferric reductase NAD binding domain
    7.6e-15   54.9   0.0    1.8e-13   50.5   0.0    2.4  2  FAD_binding_8  FAD-binding domain
  ------ inclusion threshold ------
        0.6    9.7   2.8        1.3    8.7   2.8    1.5  1  DUF4131        Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.22   1.3e+03     116     144 ..     134     162 ..     105     164 .. 0.81
   2 !   63.8   0.0   3.1e-21   1.9e-17       2     152 ..     175     339 ..     174     342 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.22
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 116 fgRPnlkevlkdiaskhknssvgvfvCGp 144
                     +R      l+++ ++h+n+s+gv+  Gp
     KKY17410.1 134 RARGGYTARLQQYTEAHPNASLGVLLDGP 162
                    5566777889999999********98776 PP

  == domain 2  score: 63.8 bits;  conditional E-value: 3.1e-21
                    xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   2 envllvagGiGitpfisilkdllkksk...kealktkkikliwvvressslewfkdvLneleeekse.....gnieihiYlTseyeaedasdqlis 89 
                    + +l+++gG+G+ ++++++ ++l  s     ++   k+++ ++v+r+s    wf+++Ln l ++ +      +++ei+i+lT++++ ++ ++++ s
     KKY17410.1 175 NRLLIITGGSGAGFALPLIEHFLILSTasqRHHEMPKSMTVVIVTRHSRTKIWFEESLNDLISQYPAlssstNKLEISIHLTNDNDFDAGTNSSSS 270
                    679******************99877744455666789********************988877655566799************98555554444 PP

                    x..xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6  90 s..iegenseslkqgvdavsgtr..nvkihfgRPnlkevlkdi.....askhknssvgvfvCGppklvkevk 152
                        e++++ ++++ +    + +    +   gRPnl+++++++      ++++ +s+g+fvCGpp++ ++ +
     KKY17410.1 271 PstLESKEVLETSNPIP---PGKgiHLSPSLGRPNLSDLINKEistpsTVTEQHQSLGIFVCGPPGMQQDAR 339
                    40044444444443322...222333777789**********99**9999999***************9987 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   3.1e-17   1.8e-13       7     106 ..      69     164 ..      64     167 .. 0.86
   2 ?    1.7   0.0     0.043   2.6e+02      60     107 ..     247     334 ..     239     336 .. 0.70

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 3.1e-17
  FAD_binding_8   7 akvalleedliklkvskpkkslkykaGqyvyini..pslsklfwqsHPFtiasape......ddklslvikvksgltkklakkllssskkelenkk 94 
                    a+++l+++d ik++++ +   +++k+Gq+++i +  + l   ++  HPFti s p         ++  +i++++g t +l+++        +   +
     KKY17410.1  69 ARLSLMPNDFIKVTIRGN---FMWKPGQHIFIRFlgHGLH--SLTTHPFTICSLPTlsnedgLREMAFYIRARGGYTARLQQYTEAH----P---N 152
                    7899**********9754...78***********877888..67**********99988633357899*************998886....4...7 PP

  FAD_binding_8  95 aklkvlidGPYG 106
                    a+l vl+dGPYG
     KKY17410.1 153 ASLGVLLDGPYG 164
                    899********9 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.043
  FAD_binding_8  60 eddklslvikvksgltkklakkllsssk........................................kelenkkaklkvlidGPYGa 107
                    +  ++s+++++ +++    ++  + s+                                          +++++ ++l +++ GP+G 
     KKY17410.1 247 NKLEISIHLTNDNDFDAGTNSSSSPSTLeskevletsnpippgkgihlspslgrpnlsdlinkeistpSTVTEQHQSLGIFVCGPPGM 334
                    4556777777777777777666666644677777777777777777777777777777777777777766778889999999999986 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.8   0.00021       1.3      13      51 ..      18      59 ..      11      70 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00021
     DUF4131 13 llllllllllllrr...rprrrvllllllllllallgfalra 51
                +++++++l+++++      ++ ++++++++++l++l+ ++r 
  KKY17410.1 18 VAAFIFALFFFWHCdfrLSSWDYFIAAGIIYALCFLYSQIRM 59
                5666677777666689999*******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2432.35
//
Query:       KKY17411.1  [L=212]
Description: putative dna polymerase delta subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-29  102.3   4.3    2.5e-29  102.3   4.3    2.7  3  DNA_pol_delta_4  DNA polymerase delta, subunit 4


Domain annotation for each model (and alignments):
>> DNA_pol_delta_4  DNA polymerase delta, subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.4     0.043   7.6e+02      10      48 ..      29      66 ..      18      80 .. 0.52
   2 !  102.3   4.3   1.4e-33   2.5e-29       9     130 ..      74     189 ..      66     191 .. 0.82
   3 ?   -2.5   0.1      0.34     6e+03      99     103 ..     194     198 ..     193     203 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.043
  DNA_pol_delta_4 10 kesevdkekkvssaekeevaetkepekleeelkaekele 48
                     ++s+v+k+++  s++ + ++++k+  +le+e +a +e++
       KKY17411.1 29 ASSQVTKSSS-TSTTPAGKDTAKKIISLEQEPRASNEPD 66
                     3334444333.2233333334444455555555555444 PP

  == domain 2  score: 102.3 bits;  conditional E-value: 1.4e-33
  DNA_pol_delta_4   9 ekesevdkekkvssa.ekeevaet..kepekleeelkaekelekqidkewkkieeerkappvHaeelskvekvLreFDvsskYGPciGltRleR 99 
                      +ke+e+ ++++v+    ++ev++   k +ek++ e +aek++++++  +wkk ee r+ap+         ek+Lr+FD+ss+YGPciG+ Rl+R
       KKY17411.1  74 SKEIEDVETEDVEVRgIQAEVITLptKPEEKTKREQEAEKISDAAVRRYWKKEEESRIAPR---------EKILRHFDLSSQYGPCIGISRLKR 158
                      555566666665543145555544656668889999999******************8886.........9*********************** PP

  DNA_pol_delta_4 100 WkRAeklgLnPPeevkavLlkeeaeeekkke 130
                      WkRAe lgL PP+ev+avL+kee+ + ++k+
       KKY17411.1 159 WKRAESLGLSPPVEVLAVLMKEEEADTERKK 189
                      **********************998877665 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.34
  DNA_pol_delta_4  99 RWkRA 103
                      RWkRA
       KKY17411.1 194 RWKRA 198
                      9***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1199  (0.0668749); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1433.40
//
Query:       KKY17412.1  [L=775]
Description: putative flavodoxin and radical sam domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-26   91.4   0.0    7.1e-26   90.4   0.0    1.6  1  Wyosine_form  Wyosine base formation
    6.7e-21   75.4   0.1      2e-20   73.8   0.1    1.8  1  Radical_SAM   Radical SAM superfamily
    1.6e-08   34.9   0.0    9.1e-08   32.4   0.0    2.2  1  Flavodoxin_1  Flavodoxin
  ------ inclusion threshold ------
       0.14   11.8   0.2       0.25   11.0   0.2    1.3  1  DUF4712       Domain of unknown function (DUF4712)


Domain annotation for each model (and alignments):
>> Wyosine_form  Wyosine base formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   0.0   1.6e-29   7.1e-26       1      62 [.     625     693 ..     625     694 .. 0.94

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 1.6e-29
                   HHT-SEEEEEE--------...----------HHHHHHHHH....HHHTSSS.EEEEEEETTTTEEEEE CS
  Wyosine_form   1 kaepdFvEvKaytyvGssr...srLtmknvPwheevadfak....rlegsaedYellaehrhSrvvlla 62 
                   k+ p+FvE+K++ty+G+s+   + Ltm+nvPw+eev++f++     l++++++Y+++aeh+hS++vlla
    KKY17412.1 625 KGLPCFVEIKGVTYCGTSTsagAGLTMANVPWYEEVVEFVEalnaSLAKRGLEYGIAAEHAHSCCVLLA 693
                   689****************9999******************88888888888****************9 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.1   4.5e-24     2e-20       3     159 ..     440     614 ..     438     623 .. 0.89

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 4.5e-24
                  EESEESS--TTTSCCTT..HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE.....................SSTGGGSTTHHHHHHHHHHTCCCT CS
                  xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   3 vtrgCnlrCsfCarpet..vrregrgrslsveeileevkelkaekgvkevilg.....................ggepllypdfvellerlaklavpg 77 
                  ++  C+++C+fC+r+ t  v++++r+++  +e i   +ke++ +k +k +  +                      gep++yp++ ++l+ l+ +    
   KKY17412.1 440 PSLSCSNKCVFCWRHGTnpVSTTWRWQVDEPELIFTGAKEGH-YKKIKMMRGVpgvraerfeeamrirhcalslVGEPIFYPHINKFLDLLHGE---R 533
                  6678*************************************7.3335555555999999999999999999999*******************8...9 PP

                  EEEEEEECSSCHGHHHHHHHHHTT-SEEEEEEBSSSHH...HHHHHHTCTSHHHHHHHHHHHHHHTTSET.EEEEEEEBTTTSHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
  Radical_SAM  78 iritvetngtlpdeeklerllelgvdrvslgleaadde...kvlklmnrghtfeevlealeklreagikr.vvdrivglpGendee 159
                  i+ ++++n+ +p  ++le+l +  v++++++++a + +   k+ +++  ++ +e++ ++l++lre+++   +v+r+++++G+n +e
   KKY17412.1 534 ISSFLVCNAQHP--DQLEALTR--VTQLYVSIDASNRDslkKIDRPL-HRDFWERFQKCLDILREKRFVQrTVFRLTLVKGFNIDE 614
                  ***********6..66666666..9*************999999999.66*****************9999************765 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0     2e-11   9.1e-08       1     143 []     130     292 ..     130     292 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 2e-11
                   EEEETSSSHHHHHH.......HHHHHHHHHTTTEEEEEEEEGTTSC.........GGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHH.. CS
  Flavodoxin_1   1 ilYgSetGnteklA.......kqlaeelgehgfnadvvslsdydes.........lseieeealllvvtsTfgnGdppengesffqdllelkgde.. 79 
                   i++ S tG+teklA       ++ ae +ge+ ++++++++s ++ +          +++e+ + ++ + ++ ++ d   n      + le+ +++  
    KKY17412.1 130 IFFCSLTGTTEKLAgevqgslERFAERVGERILKPQLHDISYVEFDdyfingppkQKSFENIKHVYCILIPSYDIDTILNTF---ISNLEEIHHDfr 223
                   89************3333333344677777778889998887777678999999989999999999999999****999966...444444434445 PP

                   .GCCSTTTTEEEEEEEEECTTSSS.....TTHHHHHHHHHHHH.TTCEEESSSEEEETTSTHGHHHHHHHH CS
  Flavodoxin_1  80 .ledgdlsgvrfavfglGdsayen.....Fcaagkkldeklee.lGaerllkllegdednqegqeeafrkW 143
                    ++++  + + + vfg Gd+++++     Fc  + ++d+++ +  G +r+ ++++gd +    + e++++W
    KKY17412.1 224 iNTAPLSTLLGYTVFGIGDKEGWPteaqgFCSKAIEVDKWMAKlTGRKRFYPVGTGDVKG--PLMESLSEW 292
                   45655556689********************************66889999******987..566666666 PP

>> DUF4712  Domain of unknown function (DUF4712)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   5.5e-05      0.25      13      69 ..      66     123 ..      64     136 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.5e-05
     DUF4712  13 aaaidRafedvsksqecsgqqkleadasPssaakavsrLlcrRtP.laasssaaplas 69 
                 +aaid+ + +++  +  s +q+++a+++P+++  +  ++++ R+P  ++s+ ++  +s
  KKY17412.1  66 TAAIDKVLPEIADLNRDSVRQSIPASQAPKQSVAKGPKVITGRKPvRTSSPESQKHTS 123
                 8********************************************6556666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.52
# Mc/sec: 4502.09
//
Query:       KKY17413.1  [L=610]
Description: putative gamma-tubulin complex component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-17   63.7   0.0    5.1e-17   62.3   0.0    1.7  1  GCP_C_terminal  Gamma tubulin complex component C-terminal
    1.6e-12   47.7   0.0    2.5e-12   47.1   0.0    1.3  1  GCP_N_terminal  Gamma tubulin complex component N-terminal


Domain annotation for each model (and alignments):
>> GCP_C_terminal  Gamma tubulin complex component C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   5.7e-21   5.1e-17       5     287 ..     165     550 ..     162     598 .. 0.69

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 5.7e-21
  GCP_C_terminal   5 LkllkrylLlgqgdFisrLldalfdel.................wkpasselrlaLtslLeeairssnaqq....sdelkddlsfaldlpevlee 78 
                      ++l r+lLl+qg+F + L++ + ++                  ++ a  e +  +t++L++a    +  +     d+++++l++a d+ ++   
      KKY17413.1 165 VRVLNRFLLLQQGEFPVTLINRVDARIhektqesyqqvrkagllDNLAIREGE--VTAVLNHAWADLA--SlrdgDDDHDEELELARDMIQLSIA 255
                     6899*******************999866666666665555555444444444..6666666666443..1345556666666666655554444 PP

  GCP_C_terminal  79 ldakldpds..........legldfltLeYkvpwplslvitpealekYqriFrfLlrvkrvefalsslwkrrkatgarsvl.............. 149
                      + k +p++          l       L++++++pl+l ++   +e+Y  i ++Ll ++r+e ++sslw +r++ ++ +++              
      KKY17413.1 256 SKGKENPKKstplvvpfddLLFPTPTVLSFRIEPPLDLFLSDPDIEQYSAISSLLLGIRRAEIHISSLW-KRTSIRRCQPTppgppfstsahglk 349
                     444444444667666654433445557999***************************************.4444444434455666888889988 PP

  GCP_C_terminal 150 ...............lkrarllrqemlhfvsqlqyYvldeviessWreleekl.kke.................................at... 192
                                    l+  +++ + ml +v+++ +Y++  v++ + +++ ++l +                                   ++   
      KKY17413.1 350 qlqarrgmerqreinLRAYWATASAMLYLVTEVGSYLQGFVVHNHSSTFSSWLdS-FdtkgkptsfraspilaedgdehavpssptiggsEScrp 443
                     9888888888777777777**********************************43.358899999999999988888888877777766611556 PP

  GCP_C_terminal 193 ....dldelieaHeafLdsilkkclLrskkkllklleeilelileFakvldgly..lsvselt.................aeeaeeeeleeklee 264
                         d+ +l +aH+ +L+s++++++L+s  ++++ ++e+l +  +F+ ++++l   +     +                 +        e+++  
      KKY17413.1 444 nailDPATLVAAHQIYLHSLVEALFLTSA-AIMQPFHELLVISEHFTALFHRLAgiHMNL--DlevegvdigdptrsysaE--------EKEVLV 527
                     66679************************.****************99888877543333..2458899888765543321........222334 PP

  GCP_C_terminal 265 rleelekeFrkkvslllkvlral 287
                     +++e + + +  ++ + ++++a 
      KKY17413.1 528 EMKETRIKINGIMQRFAEAVKAW 550
                     45555555555555555555444 PP

>> GCP_N_terminal  Gamma tubulin complex component N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   2.8e-16   2.5e-12     144     301 ..       2     153 ..       1     157 [. 0.78

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 2.8e-16
  GCP_N_terminal 144 sllheaaqhgdpkvrkllsellervsrpflemlekWileGels.DpynEfFveenesvakeklkeddseklweekYtlrkemlPsflseelaekI 237
                     ++l +++ +g   +++++ ell+ +   +l+ l++W+l+G+l     ++ F + +++++             +++++++ +mlPsf+s+e a+ +
      KKY17413.1   2 DFLKQESYTGYRDLENIALELLQIAEITWLRLLSNWLLYGRLPtVGAQDLFLRAQDETRA------------NQSFIVDDKMLPSFISPETAQSV 84 
                     677888999999******************************6255699***99888853............579******************** PP

  GCP_N_terminal 238 letGkslnflrescgdsew.iektes......eekeleyiddleelssslslsleelidsayklaskrlle 301
                     l +G+sl+ +r+     +w + ++++      ++ ++++++dl+  s +  + +++++++++   s+  l 
      KKY17413.1  85 LIIGRSLHQIRSRKVPHTWsVGNSSAdpvsalSSIHVQFLEDLK--SPFAASDVSSTVSAIRLSLSQNALA 153
                     ************85557887444444444433333345566666..6666777777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 3660.24
//
Query:       KKY17414.1  [L=403]
Description: hypothetical protein UCRPC4_g05556 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2602.36
//
Query:       KKY17415.1  [L=751]
Description: putative oligopeptide transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     2e-154  515.6  24.3   2.3e-154  515.4  24.3    1.0  1  OPT       OPT oligopeptide transporter protein
  ------ inclusion threshold ------
        1.2    9.5   4.0        8.1    6.9   0.1    3.5  3  DUF4212   Domain of unknown function (DUF4212)


Domain annotation for each model (and alignments):
>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  515.4  24.3  2.6e-158  2.3e-154       2     613 ..      80     741 ..      79     744 .. 0.91

  Alignments for each domain:
  == domain 1  score: 515.4 bits;  conditional E-value: 2.6e-158
         OPT   2 lTlRavvlGillgvlgsavnmyfglrtglvsissipaallafplgkalarilpklslnpgpftikEnvliqtmasaaatlalatglivvipalel.ygq 99 
                 +T+R v++G l+g++++++n+yfgl+tg+vs +++pa+l++f+++k  +r+l+       pft+ Envl+qt+a a++  +l++g+++v pal++  +q
  KKY17415.1  80 FTFRGVLVGSLIGIVICFSNTYFGLQTGWVSGMAMPASLIGFAVFKSISRFLKV------PFTPVENVLVQTVAGAVGMEPLGCGFVGVMPALQFlLKQ 172
                 8***************************************************77......***********************************9666 PP

         OPT 100 sag......fgylillslsvqllGvgfagplRkflvypeklifPsglataellkalhkpegee.................................... 156
                 + g      +g+l+++ + ++l+Gv+fa+plR+ ++++ekl fPsg+ata ++ +lh+ ++++                                    
  KKY17415.1 173 EEGapldmgIGKLLAWGTGISLFGVVFAVPLRREVIIREKLKFPSGTATALMIGVLHGVQEKKevedvaqveteetetllrprnlsddstvegqgddar 271
                 666666788*************************************************9988899*********************************9 PP

         OPT 157 ...ksrlkfflivflgsfvwglfplylfpalssfswltwiapknvvlanlfglgllp.ltfdwnviaayiGsglivplwvavnmliGavlswgiliPll 251
                    k r++++ i+f  s+++  + +y +p+l+++ ++              gl l++ + +++n+++ay+G+g+i+++ ++++ml+Ga+++wgil+Pl 
  KKY17415.1 272 dewKGRIRLLSIAFTVSAIYT-LVQYFIPQLRNIPIF--------------GLTLANvWQWTLNPSPAYMGQGIIMGPATTIHMLLGAIIGWGILSPL- 354
                 999999999999888888887.345556677777766..............***********************************************. PP

         OPT 252 yysngwypaylpydvteildedgvldyekyigyglmllaalvallylvqfaaitllivhtilkhgkdikaalksa......................rs 328
                 ++++gw++++++       +e+g++++++++++++ml++a+ +l++l+  + +     + + +       ++k++                      ++
  KKY17415.1 355 AKKKGWASGSVD------DWEEGSKGWIVWVSLAIMLADAVLNLGWLFLRPLLHHGPEWYLQFERAIHTGSWKDFsfvrdhirysaietdsapgtplST 447
                 8***********......77****************************999999999999999999999999999999988887766666555444322 PP

         OPT 329 prteeddrhrrlmrkykd..............vpmwwylallvlslvigiivvealf.tqlpvwglllalllafllaivsaiiaGltglnpvsgigklt 412
                 pr++++                          +p w+ l++l +++v+++++v++ f   +pv  +++a++l++ l+i++++++G+t+lnpvsgi+klt
  KKY17415.1 448 PRKTTK-----------NafndtpddapahhlIPTWVTLIMLPATMVLCVVCVHVSFgDYIPVSLTIFAIILSIPLSIMGVRALGETDLNPVSGISKLT 535
                 333333...........133334445566899******************************************************************* PP

         OPT 413 qlifgallpg....rpvanlvfgavvyaaaaqagdfmqDLKtGhllkasPraqfvaqliGtlvgavvniavlkllvkaygdictadasnaftaPqakvf 507
                 ql+f++++p+    ++v+nl++ga+++a+a qagd++qDLK Ghll asPraqf++q+iG+++ga+ +++v+kl+v++y ++     s++f++P+ +v+
  KKY17415.1 536 QLVFALVTPSnspnAIVINLIAGAISEAGALQAGDMLQDLKAGHLLNASPRAQFYGQMIGSIIGAFAATFVYKLYVNVYNIP-----SDMFQVPTGYVW 629
                 **********87777*****************************************************************98.....99********** PP

         OPT 508 aavavllvggkkglpwafl...lgavapfilllllkkfpkkstarkl.......plplafavgfylppslsialligglianlwlkrrdaewakkynyv 596
                 +++a+ lv+gk glp +++   l ++++f+l + l+ + + s   kl       p ++a+avg+y+ ps+++a+ iggli+ +w k   +++ ++ ++v
  KKY17415.1 630 IFTAR-LVTGK-GLPPMAWqfsLAFGILFLLTTSLRIYLSLSSSPKLkslhpyiPGGIAVAVGMYNTPSFTLARTIGGLISLYWVK--GKNRSETVVIV 724
                 *****.99999.777777755588888888888877766666666667888889********************************..99999****** PP

         OPT 597 laaGLiaGealmgviia 613
                 la+GLi+Ge++m+++ +
  KKY17415.1 725 LASGLILGEGVMSILGL 741
                 **************866 PP

>> DUF4212  Domain of unknown function (DUF4212)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.2   1.1e+04      16      42 ..     185     210 ..     182     225 .. 0.66
   2 ?    6.9   0.1    0.0009       8.1       5      45 ..     274     311 ..     270     312 .. 0.80
   3 ?    1.6   0.2      0.04   3.6e+02      46      70 ..     588     612 ..     570     629 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.2
     DUF4212  16 LviWfvvsfglgillaeelntirtflg 42 
                 L++W     ++g+++a +l +   ++ 
  KKY17415.1 185 LLAWGTGISLFGVVFAVPLRRE-VIIR 210
                 5566665555688898888665.3554 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0009
     DUF4212   5 wrenlrlililLviWfvvsfglgillaeelntirtflgfpl 45 
                 w+ ++rl+ i +++ ++ + +  ++++++l +i  ++g+ l
  KKY17415.1 274 WKGRIRLLSIAFTVSAIYTLV--QYFIPQLRNI-PIFGLTL 311
                 777788888888888777777..9*********.5999876 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.04
     DUF4212  46 gFwfaaqgsilvfvvlifvYalrmd 70 
                  F+    gsi+ + +  fvY l+++
  KKY17415.1 588 QFYGQMIGSIIGAFAATFVYKLYVN 612
                 5788888999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.35s 00:00:01.03 Elapsed: 00:00:00.53
# Mc/sec: 4265.10
//
Query:       KKY17416.1  [L=266]
Description: hypothetical protein UCRPC4_g05558 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.55
# Mc/sec: 1443.54
//
Query:       KKY17417.1  [L=389]
Description: putative amino acid permease 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-27   96.3  32.4    2.2e-27   95.9  20.0    2.1  2  AA_permease_2  Amino acid permease
    1.3e-14   53.7  23.1    4.1e-14   52.0  16.5    2.1  2  AA_permease    Amino acid permease
  ------ inclusion threshold ------
      0.067   12.8   3.3      0.062   12.9   1.5    1.8  2  DUF3483        Domain of unknown function (DUF3483)
        4.9    7.5   5.1       0.71   10.2   0.2    2.1  2  MLANA          Protein melan-A


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   5.6   0.00095       4.2       2      80 ..      40     125 ..      39     130 .. 0.64
   2 !   95.9  20.0     5e-31   2.2e-27     210     424 ..     129     351 ..     124     358 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00095
  AA_permease_2   2 sllsafalvigsvigsgifvkn...laasggpalilwvwiavligslavllvyaEl.ssalprsg....Giyvytkaafgkkvafls 80 
                    ++l+++++v+  ++   ++ ++   ++  gg a ++w +i+++++  + ++ + El s   p+ g    G+y++++++ ++k   + 
     KKY17417.1  40 GFLATLGFVSIYMATWEFVLVSlsaGFIDGGFAGLFWTFIGTVLCYSTIVASLSELeSM-APTAGvnapGQYHWVSEFAPEKYQRFL 125
                    66666666666664444433333335566999988888877766655677778888665.565555555*********987766444 PP

  == domain 2  score: 95.9 bits;  conditional E-value: 5e-31
  AA_permease_2 210 vseevkk.k.dvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvilialsllgaintavigssrvleala 303
                     +eev+     vp+a+ ++ +  ++ ++l+ i++l++++  e a +++ + ++ lf+++ g++ va ++ i++ + ++ + +t ++++sr ++a++
     KKY17417.1 129 AAEEVEDaSlVVPRAMWWSYVANVIAGILILITMLFGIGNLEDAINADAP-YLNLFLNT-GSTGVALFLTIFLLFLIFAGNITTLATVSREIWAFS 222
                    56778874358*****************************8877777755.67777777.999********************************* PP

  AA_permease_2 304 rdgvlP..rffakvn.kfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrphlkr.......pgkilvai 389
                    rd+++P  r+++++n k+ +p++++ lt +++  +l+l+ l+s+ a+n+++s+s l+l++ y++ i ++l+ r+k  +l+        +g  +v++
     KKY17417.1 223 RDRGFPfsRWISRMNkKYDIPFNSVYLTSVLTA-ILCLINLGSNLAFNIIVSLSLLALLSTYMISIGCVLYRRIKGYQLPHarwslgrWG-LPVNA 316
                    *******************************95.5577888889**************************99999888844345633243.69*** PP

  AA_permease_2 390 igalfllfllvalffppkgpatqssliytiiltva 424
                    ++++++ f++v+ +fp  +p+ +s  +++ +++++
     KKY17417.1 317 FAFFYSGFVIVFSCFPVSTPVGTSDANWAPAVWAG 351
                    ****************9999988887777555443 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.5    0.0009         4      15      69 ..      58     116 ..      52     121 .. 0.89
   2 !   52.0  16.5   9.2e-18   4.1e-14     220     458 ..     128     358 ..     124     369 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0009
  AA_permease  15 lfvglgvvlsqaGplgallayllagvviflvmlslgeiatngp....ksggfytyasrf 69 
                  ++v+l+     +G +g++  ++ +++++  ++ sl+e+ ++ p    ++ g y+++s+f
   KKY17417.1  58 VLVSLSAGFIDGGFAGLFWTFIGTVLCYSTIVASLSELESMAPtagvNAPGQYHWVSEF 116
                  68999999***********************************7666666999999987 PP

  == domain 2  score: 52.0 bits;  conditional E-value: 9.2e-18
  AA_permease 220 iiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplinaviltaalssansslysasRvlys 317
                   +a+Ev+d +  +P+a+    +  +i+ +l+l+++ ++++    + +n  a+a  p+ + + ++g+ ++a ++++++l  ++   +  l++ sR +++
   KKY17417.1 128 SAAEEVEDASLVVPRAMWWSYVANVIAGILILITMLFGIGNLE-DAIN--ADA--PYLNLFLNTGSTGVALFLTIFLLFLIFAGNITTLATVSREIWA 220
                  589********************************99997544.4444..344..99***************************************** PP

  AA_permease 318 lakdglaP..kvlkkvs.krgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfRkalkyqgrsieelgfkaallp 412
                  +++d+ +P  ++ ++++ k+  P ++++l++++ +++ l++  +     +fn+++++s l+ l++++++i + l +R+ + yq  ++ + +   ++lp
   KKY17417.1 221 FSRDRGFPfsRWISRMNkKYDIPFNSVYLTSVLTAILCLINLGSNL---AFNIIVSLSLLALLSTYMISIGCVL-YRRIKGYQLPHA-RWSLGRWGLP 313
                  **********666666516789***********9999977655554...9***********************9.888877776644.7777777766 PP

  AA_permease 413 lgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivll 458
                      ++++   +++++  +  +++v++++++w +a+ a +++  ++
   KKY17417.1 314 V-NAFAFFYSGFVIVFSCFPVSTPVGTSDANWAPAVWAGVIIVSIV 358
                  4.45666677778888888889**************9999887655 PP

>> DUF3483  Domain of unknown function (DUF3483)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.1   4.8e+03       4      47 ..     199     240 ..     194     241 .. 0.59
   2 ?   12.9   1.5   1.4e-05     0.062      73     148 ..     252     331 ..     249     368 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.1
     DUF3483   4 ltlllwlalallalglvrraalWraGraakvdllagLlalPkRY 47 
                 l  l+++  +++++++ r  ++W   r   + + +++  + k+Y
  KKY17417.1 199 LLFLIFAGNITTLATVSR--EIWAFSRDRGFPFSRWISRMNKKY 240
                 333444444444444444..678888888888888888887777 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.4e-05
     DUF3483  73 vaalaLvllayglalasasldwlllaaal.vmlvGallvakRRr...akp.arLSkGrwqrLpksLlafalglllvallaa 148
                 v++++L l+++g +la ++++ l l+a l + ++   +v  RR    + p ar S Grw  Lp+   af  + ++++    
  KKY17417.1 252 VLTAILCLINLGSNLAFNIIVSLSLLALLsTYMISIGCVLYRRIkgyQLPhARWSLGRWG-LPVNAFAFFYSGFVIVFSCF 331
                 6788999999999999988887766666657777777788888756644449*******5.88887777776666554332 PP

>> MLANA  Protein melan-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   0.8         4   1.8e+04      26      41 ..     189     204 ..     187     206 .. 0.75
   2 ?   10.2   0.2   0.00016      0.71      26      53 ..     272     299 ..     264     306 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.4 bits;  conditional E-value: 4
       MLANA  26 aGigllvvvLaillll 41 
                  G++l++ +  + l++
  KKY17417.1 189 TGVALFLTIFLLFLIF 204
                 6889988888777776 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00016
       MLANA  26 aGigllvvvLaillllgCwyykrrsGYk 53 
                 + ++ll+++ + ++ +gC  y+r +GY+
  KKY17417.1 272 VSLSLLALLSTYMISIGCVLYRRIKGYQ 299
                 567899999999***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.53
# Mc/sec: 2189.33
//
Query:       KKY17418.1  [L=986]
Description: putative transcription factor spt20 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-43  148.1   0.6      3e-43  148.1   0.6    7.0  2  Spt20     Spt20 family


Domain annotation for each model (and alignments):
>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.1   0.6   1.7e-47     3e-43       3     230 ..     179     451 ..     177     453 .. 0.87
   2 ? -137.8 162.0         1   1.8e+04     111     168 ..     757     836 ..     526     986 .] 0.80

  Alignments for each domain:
  == domain 1  score: 148.1 bits;  conditional E-value: 1.7e-47
       Spt20   3 ekllkkyeeklpslelhlypnhfrfslklnlqsqekkkensseslrlpynselkelleyvdretiPealmelLrdanikfYeGclIvqvrDhrnsvaqs 101
                 e++lkk++ ++psl++hl++++frf               +++++++ y+se++ ++e+++++t+P++++e+L++++++fY+G lIv+v+Dh++s +++
  KKY17418.1 179 EYILKKFKGHPPSLIVHLHQTYFRF---------------DQQDGSFGYQSEMRFFIEHLQKRTVPHDILEELKQSDVQFYDGWLIVRVVDHKSSATNT 262
                 79***********************...............**********************************************************9 PP

       Spt20 102 qktq...dqkqsq.......qnqqqqqqqqqqqqqqqq....qqeqqqqqnekdsttteekekksksknnssksktttkkpkvyrtLLrptpqslladl 186
                 + ++   +++  q       + +++++++ ++++ + q     ++ +++++++ ++++++  +  k k ++ + k  ++ pkvy++ Lrpt +s + d+
  KKY17418.1 263 DSSSsspKDE--QtpcsihnYTPYITPSPWAPYPSKDQpktsPKQRSTSTKQEPESSSNQAVESGKGKLKQTDGKGAASEPKVYHVALRPTALSQHLDI 359
                 8777754223..2458**********************87632333333333333333333444455555556677899******************** PP

       Spt20 187 qllast................................................srlsdedylelEselllataepLclepspnvykqrqll 230
                  + ++t                                                ++++++d+   E+ +++ ta+pL le+ + +++   ll
  KKY17418.1 360 VIDSMTpdlkalnkkqppnanrttgsstgapptplsavpptptldrghpakrqkMKVEPKDLMDYEARIVNSTAPPLWLETVDCMEEADHLL 451
                 *9999999*************************************************************************98887777666 PP

  == domain 2  score: -137.8 bits;  conditional E-value: 1
       Spt20 111 q..qnqqqqqqqqqqqqqqqq........................................................qqeqqqqqnekdsttteekekk 151
                 q  q+q +qqqqqq q q  q                                                        +                     
  KKY17418.1 757 QqrQQQMIQQQQQQMQAQGHQlsnadmthlqtqqharqqqflaqqqmmqaaaqgqhgspvpngnpnqqqynaqlaqmM--------------------- 834
                 112222223333222222222555566555555554444342222222233333333333333333333333333331..................... PP

       Spt20 152 sksknnssksktttkkp 168
                                ++
  KKY17418.1 835 ---------------RQ 836
                 ...............33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (986 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3671  (0.204752); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                       150  (0.00836633); expected 17.9 (0.001)
Passed Fwd filter:                        52  (0.00290033); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.84u 0.39s 00:00:02.23 Elapsed: 00:00:00.64
# Mc/sec: 4626.53
//
Query:       KKY17419.1  [L=494]
Description: putativebeta-glucanosyltransferase gel2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.1e-118  394.6   3.3   3.8e-118  394.3   3.3    1.1  1  Glyco_hydro_72  Glucanosyltransferase
      0.003   17.0   0.0        2.5    7.4   0.0    2.3  2  Cellulase       Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Glyco_hydro_72  Glucanosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.3   3.3  4.2e-122  3.8e-118       4     314 ..      15     329 ..      12     330 .. 0.97

  Alignments for each domain:
  == domain 1  score: 394.3 bits;  conditional E-value: 4.2e-122
                     XSSTTS--EEEETTEEEETTT-BBE-EEEEE--BE------SSB-GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEE CS
  Glyco_hydro_72   4 aaeeaveaieikgnkffdsksgeqfyikGvdyqpggseevsslvdpladaeaCkrdikllkelgvntvrvyavdnskdhdeCmkalsdagiyvil 98 
                     ++ +av+ i++ g +f++++s+e+f i Gvdyqpggs+  +s++dpl+d+ +C rd+ l+++lgvnt+rvy++d+++dhdeC +++++agiy+il
      KKY17419.1  15 SLVSAVQYITVDGANFVTNTSDERFSIIGVDYQPGGSSGFTSTADPLSDSTTCLRDAILMQDLGVNTIRVYNLDADLDHDECASIFNAAGIYMIL 109
                     56788999******************************99******************************************************* PP

                     ES-BT..TBS--TTS-..---HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----EEEEE---TTTH CS
  Glyco_hydro_72  99 dlnep..kesinradpassynedllervfkvidafkeyknvlgffaGnevvndksntaasayvkavvrdvkeyikkkkerkiPvGysaaddaelr 191
                     d+n+    + i+r+dpas+y+  +l+++f +i+af+ y+n+lgffaGne++n+ s ++a+ay++avvrd+keyi  +  r++ vGysaad++++ 
      KKY17419.1 110 DVNSGlsGTYIDRSDPASTYTLSYLKHIFGIIEAFARYPNTLGFFAGNEIINEDSVYEAPAYIRAVVRDMKEYIAYNIPRSVGVGYSAADVEDML 204
                     ****877899************************************************************************************* PP

                     HHHHHHTTBTT-.....--S-EEEEE----SS--HHHHSHHHHHHHHTT-SS-EEEEEE---SSSS---THHHHHTSHHHHTTEEEEEES-SB-- CS
  Glyco_hydro_72 192 velaeylaCgded...dkadffglnmyeWCgkssfktsGydertkefenysiPlflseyGCnkvtprkftevealyseemtsvfsGGlvyeysee 283
                      ++ +yl C+ e+   +k+dffgln+yeWCg ss++ sGyde ++ fe+ +iP+f+seyGCn+v+pr+ft+v  ly+++mt v sGGlvye+++e
      KKY17419.1 205 SDTWNYLGCELENstySKIDFFGLNDYEWCGDSSYTESGYDELVDLFEDTAIPVFFSEYGCNDVKPRTFTNVPVLYGSQMT-VLSGGLVYEWTQE 298
                     *********98875667***************************************************************7.99*********** PP

                     SSS--SEEE-TTS-EEE-THHHHHHHHHHH- CS
  Glyco_hydro_72 284 annyGlvkiddddvkkllkdfenlkseykki 314
                     +n+yGlv i++++v++l++df+ l++ey+ki
      KKY17419.1 299 DNDYGLVVINSTNVVTLTEDFNYLQEEYNKI 329
                     *****************************98 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00028       2.5      56     143 ..      85     171 ..      61     192 .. 0.67
   2 !    7.2   0.0   0.00033       2.9     201     250 ..     220     269 ..     218     288 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00028
                 CTHHHHHHHHHHHHHHHHTT-EEEEEEESS.TTTCSSSSTTTTHHH.HHHHHHHHHHHHHHHHTTTTTTEEEESSSS--STTCTCCTCHH CS
   Cellulase  56 vdenslerveevvkyakenglyvildiHse.egwltkadgnssedt.aeeffkklwtqiAerykkndevvifelmNEPhgnntgaewtse 143
                 ++ ++  + +e    + ++g+y ild+ s  +   t+ d+++  +t + +++k+ +  i e ++ +++ ++f   NE   +++ +e ++ 
  KKY17419.1  85 YNLDADLDHDECASIFNAAGIYMILDVNSGlS--GTYIDRSDPASTyTLSYLKH-IFGIIEAFARYPNTLGFFAGNEIINEDSVYEAPAY 171
                 55666666778888899************542..33333333333313455666.9999*****************99886665444444 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00033
                 ETTTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTS CS
   Cellulase 201 YgpsdfaqtefgkdltdktnlaqrledaakylvekgipviigEfGgsnad 250
                 Y+  df + +  + ++d++ +++ ++++ + + +  ipv+ +E+G ++ +
  KKY17419.1 220 YSKIDFFGLNDYEWCGDSSYTESGYDELVDLFEDTAIPVFFSEYGCNDVK 269
                 888889888888999******************************87654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3202.15
//
Query:       KKY17420.1  [L=582]
Description: putative 4-coumarateligase 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-88  297.3   0.1    1.9e-88  296.9   0.1    1.1  1  AMP-binding    AMP-binding enzyme
      7e-11   42.9   0.0    1.9e-10   41.6   0.0    1.8  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.9   0.1   2.1e-92   1.9e-88      19     422 ..      46     448 ..      34     449 .. 0.86

  Alignments for each domain:
  == domain 1  score: 296.9 bits;  conditional E-value: 2.1e-92
                  STEEEEHHHHHHHHHHHHHHHH.HTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCCC.HHHHHHHH CS
  AMP-binding  19 egqtlTYreldervnrlAagLr.slGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvdsel.leklleaa 114
                  +g++l++++++++++ l+ +L  + G+k+g++Va+++pn++ + va++ai +aG+v +  +p++ta+e+ay+l+ s+ak+l+ tv     ++++++++
   KKY17420.1  46 TGERLSWADVKRHTTHLSTALVeRYGLKPGETVALFSPNTVWYPVAVFAIHRAGGVMSGASPAYTADEMAYALKVSQAKFLM-TVPGSMeVAAVAAEQ 142
                  4799******************999*********************************************************.444455455554444 PP

                  SCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS........-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHH.HHHCSCCTTT- CS
  AMP-binding 115 akleavklvivldadellkeeelkeeeeseekae........kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslk.letrfklkedd 203
                  a     k+ i l ++e++ +++ k+  ++ e+ +        +  ++ e++ d +a++ ++SGTTG PK+Vm+ h n++++v +++ ++ r    e  
   KKY17420.1 143 AG--LAKENIFLLEGEMSGYTNIKQLISAGEECGetgqippfRI-PAGETNRDVVAFLSFSSGTTGLPKAVMIAHSNMISQVVQVAqIT-RP---EYR 233
                  43..3444555555677777666555544444425678888633.4557899********************************86422.22...245 PP

                  EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EBHHHHH CS
  AMP-binding 204 vvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggeplspellr 301
                  + l++lpl+hi+gl+  l l+++   +v+++p  +    +++l++i+k ++  +++vP ++ +++++++    ++++d+s ++ v++g++pls+e+l+
   KKY17420.1 234 KALAVLPLFHITGLVHLLHLPIYLNIEVYMMPFYN---LETMLNVISKNRIKDLCLVPPIIIQMTRAPKS--LRNKYDCSFMENVMSGAAPLSAEILQ 326
                  78****************************99444...45789*********************997433..356679******************** PP

                  HHHHHHTC.EEEEEEEEGGGSSECEE.CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEETCCEEE CS
  AMP-binding 302 ffralfge.evlegYGlTEttgvvtv.lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafdsegrwlr 397
                   f+++f++ ++ +gYG+TE + ++t  +p+ +  +++  +G +++ + vkivD+  g+ ++ +eeGe++ rgp++ +gYl+++ at+e+fd ++++l+
   KKY17420.1 327 VFQERFPQsTFKQGYGMTESCSCITLtFPQFQGYAYAHYAGNIVASTLVKIVDPTSGKDCGYEEEGEIWARGPQIVMGYLNNETATRETFD-KDGYLH 423
                  ********99**************6665555555778889**************************************************9.767*** PP

                  EEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 398 TGDlgrldedGyleivgRkkdlikl 422
                  TGD+g++d +G l +++R+k++ik+
   KKY17420.1 424 TGDIGKIDNRGLLLVTDRLKEMIKV 448
                  ********9***************8 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   2.1e-14   1.9e-10       1      76 []     457     539 ..     457     539 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 2.1e-14
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE---..---......HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg..sea......leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    e+E  l+ h+ V+++aV G++d++ Ge+++a++vl++     +        ++L+++v+++    +   ++++ de+pk +sGK
     KKY17420.1 457 ELEDLLLGHELVEDCAVLGIKDDLAGERPKAYIVLRASaaA-DeqrlenSCQALMQYVKDKKNRNKWIVEFEVADEIPKSASGK 539
                    89*********************************754331.13466779999*****9988888889999999*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 3687.13
//
Query:       KKY17421.1  [L=71]
Description: putative glucose-repressible protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-31  105.8  13.2    1.1e-30  105.6  13.2    1.0  1  Grg1      Glucose-repressible protein Grg1


Domain annotation for each model (and alignments):
>> Grg1  Glucose-repressible protein Grg1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6  13.2   6.1e-35   1.1e-30       1      67 []       1      67 [.       1      67 [. 0.99

  Alignments for each domain:
  == domain 1  score: 105.6 bits;  conditional E-value: 6.1e-35
        Grg1  1 MdtiknaanyVsekvqgataeaskeanKevaKdsnasigdRasAakdavsDKidekkhdakAeanKe 67
                MdtiknaanyVse+vqga++easkeanK vaKd+na + +Ra+Aakda++DK++e+k d+kA+++Ke
  KKY17421.1  1 MDTIKNAANYVSESVQGAGHEASKEANKSVAKDNNAALDTRATAAKDALGDKFNEHKSDTKADVHKE 67
                9*****************************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       811  (0.045234); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 491.20
//
Query:       KKY17422.1  [L=447]
Description: putative cation diffusion facilitator 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.3e-16   58.2   6.1    1.2e-15   57.8   6.1    1.2  1  Cation_efflux  Cation efflux family
    2.1e-09   37.4   0.2    2.1e-09   37.4   0.2    2.1  2  ZT_dimer       Dimerisation domain of Zinc Transporter
  ------ inclusion threshold ------
      0.051   13.5   0.0       0.23   11.4   0.0    2.1  2  SLATT_1        SMODS and SLOG-associating 2TM effector domain
       0.07   12.3   0.0       0.14   11.2   0.0    1.5  1  AdoHcyase      S-adenosyl-L-homocysteine hydrolase


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   6.1   2.7e-19   1.2e-15       4     198 ..     161     351 ..     158     352 .. 0.84

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 2.7e-19
  Cation_efflux   4 sllanlilalvelivglltnSlalladafhslsdlvsllllllalklsrkppderfpfGygrlevlgalvsgllllglavfllleaiqkli.kege 98 
                    s++an++la+ +l +++ ++Sl+l+     +l+d +s+l lll+ k+ +k   ++fp G  r+e+ g +v   ++  + + l+  ++  l+  +ge
     KKY17422.1 161 SFIANVFLAILQLYGAISSGSLSLFTTMADALFDPASNLTLLLSNKAVKKVDARKFPAGKARIETAGNIVFCFIMTSVSLILIAFSVRELVeGHGE 256
                    799****************************************************************************************63344 PP

  Cation_efflux  99 reihaglalvvalvslvvnlalllilrragrklrsaalkaaalhvlgDal.tslgvlvsalvillfnlksgplaDpvaslligliilysalkllke 193
                    ++   +l  v+a vs ++   l l+l+  + +   + ++  + ++++D+l +  g+l s+ +++l       ++Dp++++l++++i + +lk++ +
     KKY17422.1 257 ETKKFHLPSVIA-VSCAFATKLGLFLYCWALRNVYSQIRILWEDHRNDLLiNGFGILTSVGGSKLR-----WWIDPMGAILLSVLISCLWLKTAYT 346
                    444444444444.3444444444444444556688899**********995678999999999994.....4*********************999 PP

  Cation_efflux 194 slseL 198
                     ++ L
     KKY17422.1 347 EFQLL 351
                    88877 PP

>> ZT_dimer  Dimerisation domain of Zinc Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2      0.66     3e+03      45      61 ..      29      45 ..      23      54 .. 0.83
   2 !   37.4   0.2   4.7e-13   2.1e-09       3      77 ..     358     432 ..     356     433 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.66
                TS-HHHHHHHHHHHHHH CS
    ZT_dimer 45 dlsvkeaHeiadevekr 61
                ++++ +aH+ + +ve +
  KKY17422.1 29 ETQLLRAHAHSSAVETE 45
                56789999999999975 PP

  == domain 2  score: 37.4 bits;  conditional E-value: 4.7e-13
                 ..HHHHHHHHHT.T-SS-EEEEEEEEE-S----EEEEEEEE-TTS-HHHHHHHHHHHHHHHHHH-TT--EEEEEEE CS
    ZT_dimer   3 eeeeeeireiik.svpgvkgvhdlrtrksGskifvdlhievdgdlsvkeaHeiadevekrikeefpgvadvliHve 77 
                  e+++ i+ i + + p +k  + +r+ +sG+++ v++++++d+d +++  H++a+e++ ++ e++p+v++ ++Hv+
  KKY17422.1 358 TEMLQLITYISMtHSPAIKALDTVRSWHSGPRLTVEVDVVMDPDETLRATHDVAEELQIKL-ENLPDVERAYVHVD 432
                 5677778888852699*********************************************.599*********97 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.1e-05      0.23       4      65 ..     130     192 ..     129     194 .. 0.87
   2 ?   -3.5   0.0       2.1   9.6e+03      78      96 ..     368     386 ..     361     397 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.1e-05
     SLATT_1   4 eRveeqldwYrkkaeeneraakrwrlllillella.lllaalrafgelsvdlvgvlaavaaal 65 
                 +R+ +  d +r++a+e ++a++ ++ + +  +++a ++la+l+ +g++s   + +++++a al
  KKY17422.1 130 HRLLKPVDEHRRQARETNQANHLTFSIAVYGSFIAnVFLAILQLYGAISSGSLSLFTTMADAL 192
                 6999999**********99999999888888888836678888*******9999999999887 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.1
     SLATT_1  78 aaaYslaaeeLeiiraale 96 
                 + ++s a++ L+++r++ +
  KKY17422.1 368 SMTHSPAIKALDTVRSWHS 386
                 5678888889999998866 PP

>> AdoHcyase  S-adenosyl-L-homocysteine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.2e-05      0.14     171     298 ..     109     442 ..      72     443 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.2e-05
                 THHCCCHCC--EEEE-SHHHHHHHHHHHHTT---SEEEESTTSHHHCTTH................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................. RF
   AdoHcyase 171 kkytellkkikGvseetttGvhrLyelakkgkLlvpainvndsvtkskfD................................................. 220
                  + ++ ++k++G  ee    +hrL + +++ + +    n  + +t s                                                    
  KKY17422.1 109 ITIPTKASKLRGFYEEQNEQIHRLLKPVDEHRRQARETNQANHLTFSIAVygsfianvflailqlygaissgslslfttmadalfdpasnltlllsnka 207
                 556677788888888888888888888888888888888877777766557788888888888888888888888888888888888888888888888 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
   AdoHcyase 221 ................................................................................................... 220
                                                                                                                    
  KKY17422.1 208 vkkvdarkfpagkarietagnivfcfimtsvsliliafsvrelveghgeetkkfhlpsviavscafatklglflycwalrnvysqirilwedhrndlli 306
                 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 PP

                 .........................................................S-HHHHHHHHHHHHHHHHHHHHTTSSS-SSEEE--CHHHHHH CS
                 .........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   AdoHcyase 221 .........................................................hpsfvmsasftnqvlaqielfkkekkyekkvyvlpkklDekv 262
                                                                             + m++s + ++l  ++ +++  + + +v v+    De++
  KKY17422.1 307 ngfgiltsvggsklrwwidpmgaillsvlisclwlktaytefqlligktadtemlqlITYISMTHSPAIKALDTVRSWHSGPRLTVEVDVVM-DPDETL 404
                 88888888888888899999999999999999999999999999999999999998777777999999999999999998777777777764.458887 PP

                 HHHC..CCCCT-------HHHHHCCTSXTTSXXSXTTX CS
                 xxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   AdoHcyase 263 arlh..leklgaklteltkeqaeyigveveGPfkpdhY 298
                  ++h   e+l++kl++l +   +y++v+ e  +kp+hY
  KKY17422.1 405 RATHdvAEELQIKLENLPDVERAYVHVDYETTHKPEHY 442
                 666643589****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3101.59
//
Query:       KKY17423.1  [L=186]
Description: putative 60s ribosomal protein l17 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-42  141.8   0.0    1.1e-41  141.3   0.0    1.2  1  Ribosomal_L22  Ribosomal protein L22p/L17e
  ------ inclusion threshold ------
      0.027   14.0   0.1          1    8.9   0.0    2.2  2  DUF1609        Protein of unknown function (DUF1609)


Domain annotation for each model (and alignments):
>> Ribosomal_L22  Ribosomal protein L22p/L17e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.3   0.0   1.2e-45   1.1e-41       2     103 .]      18     151 ..      17     151 .. 0.97

  Alignments for each domain:
  == domain 1  score: 141.3 bits;  conditional E-value: 1.2e-45
                    EEEEESS-HHHHHHHHHHHTTSBHHHHHHHHHT.-SST...............................THHHHHHHHHHHHHHHH..HT-GGGEE CS
  Ribosomal_L22   2 kgsnlrvsfkklrevarlIrgmkveeAlkyLkf.skkk...............................aakfvlklLknaeanaelkgldvdslv 65 
                    +gs+lrvsfk++re+a++I+g k+e+A+kyL++ ++kk                               +a+f+l lLknaeana++kgld  +l+
     KKY17423.1  18 RGSYLRVSFKNTRETAQAIKGLKLERAVKYLENvQEKKevvpfrryaggigrsaqgkqfgvsrarfpakSAEFLLGLLKNAEANADTKGLDTGNLF 113
                    799******************************855556********************************************************* PP

                    EEEEEEEEEEEEEEEEEESTTEEEEEEEEEEEEEEEEE CS
  Ribosomal_L22  66 IeeiqvnkgpklkrrtyrArGrinpirkspchievvlk 103
                    +++iqvn++pk++rrtyrA+Grinp++++pchie+vl+
     KKY17423.1 114 VKTIQVNQAPKQRRRTYRAHGRINPYMSNPCHIELVLT 151
                    ************************************96 PP

>> DUF1609  Protein of unknown function (DUF1609)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0    0.0061        55     200     223 ..      20      43 ..       9      47 .. 0.82
   2 ?    8.9   0.0   0.00011         1      20      68 ..     115     163 ..      96     170 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.0061
     DUF1609 200 defrivwrnpkdtsevlrsltvlr 223
                 + +r+ ++n ++t++ ++ l + r
  KKY17423.1  20 SYLRVSFKNTRETAQAIKGLKLER 43 
                 5679**************998765 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00011
     DUF1609  20 kkkkkkkkskgerkrykihkrvlrWrksaekikkeldkGseerWkgksl 68 
                 k  + ++  k  r++y+ h r+  ++ ++ +i   l +G+ee  k k +
  KKY17423.1 115 KTIQVNQAPKQRRRTYRAHGRINPYMSNPCHIELVLTEGDEEVAKTKEV 163
                 55566777889999****************************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1323.48
//
Query:       KKY17424.1  [L=293]
Description: putative hydroxyisocaproate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-54  182.6   0.0    5.7e-54  182.2   0.0    1.2  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    3.2e-15   56.0   0.0    3.9e-15   55.7   0.0    1.0  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    0.00016   21.9   0.2     0.0004   20.6   0.2    1.6  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
     0.0096   15.5   0.1      0.018   14.6   0.1    1.5  1  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind
  ------ inclusion threshold ------
      0.026   14.6   0.0      0.073   13.1   0.0    1.7  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
      0.048   14.3   0.3       0.13   12.9   0.3    1.9  1  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
      0.049   12.8   0.1      0.073   12.2   0.1    1.2  1  CoA_transf_3   CoA-transferase family III


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.2   0.0   2.2e-57   5.7e-54       3     178 .]      82     252 ..      80     252 .. 0.93

  Alignments for each domain:
  == domain 1  score: 182.2 bits;  conditional E-value: 2.2e-57
                   HHHHHHTTH.HHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE- CS
  2-Hacid_dh_C   3 lllallrrl.aeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslh 98 
                   l+l +lr l   + + + eg w   ++  g++ +gk +Gi+G+G IG+a+akr++afgmk+i+++r++ + +   e  +e+v++++ll+++D++sl+
    KKY17424.1  82 LMLGALRSLfVPLGKLMGEGGW---ERPIGHDPKGKALGILGMGGIGRAMAKRARAFGMKIIYHNRNRLSPD--LEGDAEYVNFDDLLSKADVLSLN 173
                   6777777753677788899***...999***************************************99766..444679***************** PP

                   S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  99 lpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   l l+++t+h+i+a+el+kmk+g++++NtaRG+l+de aL++aL+s+k+a ++lDvfe+ep p+  +ll+++++++ PHi+
    KKY17424.1 174 LALNEKTKHIIGAAELEKMKDGVVIVNTARGALIDESALVKALDSKKVASVGLDVFEQEPNPNP-ELLRHKHCVFLPHIG 252
                   **************************************************************77.*************98 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   1.5e-18   3.9e-15      50     133 ..      27     283 ..      16     284 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 1.5e-18
                 -BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH.............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................. RF
  2-Hacid_dh  50 kvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt.............................................. 102
                  ++  +++a    k+i++ g+G++++D +a++erGi+++n+p++  +++A+                                                
  KKY17424.1  27 TLKVSIIQADLTAKYICHNGAGYNTIDAQACNERGIIISNTPTAVDDATADIGillmlgalrslfvplgklmgeggwerpighdpkgkalgilgmggig 125
                 4666778888889************************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  KKY17424.1 126 ramakrarafgmkiiyhnrnrlspdlegdaeyvnfddllskadvlslnlalnektkhiigaaelekmkdgvvivntargalidesalvkaldskkvasv 224
                 *************************************************************************************************** PP

                 ............................T-BHHHHHHHHHHHHHHHHHHHTTCCGTTBC CS
                 ............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ............................aaTeeaqeniaeeaaenlvaflkgespanav 133
                                              +T e+q+++   +++n++++l+++++ +++
  KKY17424.1 225 gldvfeqepnpnpellrhkhcvflphigTNTWETQKQMELLVLKNIESALDTGKVITCI 283
                 ****************************************************9998876 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.2   1.5e-07    0.0004       2     114 ..     116     226 ..     115     229 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.5e-07
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HHH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstssped 96 
                    +g++G+G +G+ ma++  + g+k++ +nr++ + +  ++  a+ + +  +l++++dv  + +  +++++++i    le++k g ++++++  +  d
     KKY17424.1 116 LGILGMGGIGRAMAKRARAFGMKIIYHNRNRLSPD--LEGDAE-YVNFDDLLSKADVLSLNLALNEKTKHIIGAaELEKMKDGVVIVNTARGALID 208
                    799*************************9965554..444454.4567899*********************997789****************** PP

                    HHHHHHHHHHTT-EEEEE CS
  NAD_binding_2  97 trelakelkekglkflda 114
                       l k+l +k++  ++ 
     KKY17424.1 209 ESALVKALDSKKVASVGL 226
                    ***********9998876 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   7.1e-06     0.018       3      96 ..     112     204 ..     111     225 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.1e-06
                 HTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE.-S-HHHHHHHHHHHTGGG--TT-EEE.ESSS CS
        IlvN   3 kgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmi.liPDelqkevyeeeiepnlkegkala.fahG 96 
                 kgk + ++G+G  G+a a+  r  g+++++ +r+     +   e   e ++ +++ +kadv+ + l+ +e  k+++ ++  +++k+g +++  a G
  KKY17424.1 112 KGKALGILGMGGIGRAMAKRARAFGMKIIYHNRNRL---SPDLEGDAEYVNFDDLLSKADVLSLnLALNEKTKHIIGAAELEKMKDGVVIVnTARG 204
                 68999************************9988776...34445556788999*******996526778888889888888889988865414555 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.8e-05     0.073      23     111 ..     113     203 ..     108     229 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.8e-05
                    TSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT.-EE--HHHCTTT-SEEEE....-SSSSSSB-HHHHCCS-TTEEEEE-SS CS
  AdoHcyase_NAD  23 GkvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaameG.fevvtleevvkkadivvt....ttGnkdiitlehlkkmkddaivcniGh 111
                    Gk   + G G +G+  a+  +++G ++i  +    + l   +eG  e v+++++++kad++         +k ii + +l+kmkd +++ n   
     KKY17424.1 113 GKALGILGMGGIGRAMAKRARAFGMKIIYHN---RNRLSPDLEGdAEYVNFDDLLSKADVLSLnlalNEKTKHIIGAAELEKMKDGVVIVNTAR 203
                    89999*********************99876...5778889999457899*********98541111445789****************99754 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   5.1e-05      0.13       2      63 ..     116     168 ..     115     204 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.1e-05
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-S CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeead 63 
                    +gi+G+G +g+a+a+++ a g    +i+   +rn      l  +l+ +++ v+  +++++ad
     KKY17424.1 116 LGILGMGGIGRAMAKRARAFG---MKII-YHNRN-----RLSPDLEGDAEYVNFDDLLSKAD 168
                    79*******************...8888.42443.....33444444455555555555555 PP

>> CoA_transf_3  CoA-transferase family III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.8e-05     0.073      57     119 ..     138     200 ..     122     208 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.8e-05
  CoA_transf_3  57 lavnrnKrsvalDlkseegrellkrLvakADVvieNfrpgvlerlglgyeelrainPrLiyas 119
                   + + +n+  ++ Dl+ ++    +++L+ kADV+  N+      +  +g++el++ +  +++++
    KKY17424.1 138 KIIYHNRNRLSPDLEGDAEYVNFDDLLSKADVLSLNLALNEKTKHIIGAAELEKMKDGVVIVN 200
                   455567777888999999999***************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 1921.69
//
Query:       KKY17425.1  [L=406]
Description: putative zinc-dependent alcohol [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-22   78.9   0.2    6.1e-22   77.6   0.1    1.8  2  ADH_N            Alcohol dehydrogenase GroES-like domain
    1.4e-12   47.7   0.0    2.4e-12   47.0   0.0    1.3  1  ADH_zinc_N       Zinc-binding dehydrogenase
    2.1e-12   47.0   0.6    9.2e-08   31.8   0.2    2.4  2  Glu_dehyd_C      Glucose dehydrogenase C-terminus
    0.00012   21.5   0.0    0.00023   20.6   0.0    1.4  1  ThiF             ThiF family
     0.0036   17.3   0.0     0.0072   16.4   0.0    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.032   13.8   0.0      0.051   13.1   0.0    1.3  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
      0.045   14.0   0.0      0.069   13.4   0.0    1.4  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
       0.28   10.4   0.7        0.4    9.9   0.7    1.2  1  FAD_binding_3    FAD binding domain


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.1   2.7e-25   6.1e-22       1     107 [.      32     157 ..      32     159 .. 0.92
   2 ?   -3.8   0.0       5.4   1.2e+04      31      51 ..     197     217 ..     187     220 .. 0.73

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 2.7e-25
                 TTEEEEEEEEEEE-HHHHHHHTTS..TTTTSSSSEE---EEEEEEEEESTT-CS............--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBE CS
       ADH_N   1 pgevlikvkaagiCgsDlhilkgg..kelevklplilGHEivGeveevgpevkk............lkvGdrVvvepliscgeCaaCkegeenlCeeak 85 
                 p+ev + +ka+g+CgsDlh++++g   ++  + plilGHE +G+v +v +   +            + +G+rV++e+  +c +C+ C++g++nlC++ k
  KKY17425.1  32 PHEVQVSIKATGLCGSDLHYYNHGrnGNFVLQSPLILGHESSGIVTAVPSTAINgststtdpstptVPIGTRVALEVGLPCRTCHLCTTGRYNLCPSLK 130
                 689*******************997788899****************98777667888999**********************************9999 PP

                 ETTTS.....S-SSSBSEEEECGGGEE CS
       ADH_N  86 llgvs.....ldGgfaeyvvvpekklv 107
                 + +       ++G++++ +  p+++++
  KKY17425.1 131 FRSSAktfphTHGTLTQTLNHPASMCH 157
                 999888999999***999999998876 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5.4
                 SSEE---EEEEEEEEESTT-C CS
       ADH_N  31 lplilGHEivGeveevgpevk 51 
                   l+lG  +vG+  ++  +v+
  KKY17425.1 197 SALVLGAGAVGILTAAALSVQ 217
                 567899999998887766665 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   1.1e-15   2.4e-12       1     129 [.     205     357 ..     205     358 .. 0.89

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 1.1e-15
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEET..........TTC.HHHHHHHHHT...............TTSSEEEEEESSCSHHHH CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadeviny..........kea.dlverikelt...............ggegvdvvfecvGsgatl 72 
                 +vG+++ +++   G+  ++ +d+++++le+a +l  +  +++          +   +++e++  +t               ++ g+  vfec+G+++++
  KKY17425.1 205 AVGILTAAALSVQGVtSITIADIDKSRLEIASSLSPTIKLHThlipktprptS-StSIEEKLSTATslasslqssspdpfiQTHGYTRVFECTGIESCV 302
                 69*************99999**************7666666667777999953.448999999999999************899*************** PP

                 HHHHHCEEEEEEEEECSC.TSSEEEEEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  73 eaalkllkpgGrlvvvGg.gkgeeefdlrnlllkeksilGsllgslreefkealdlla 129
                 ++a+ ++ pgG + +vG+ +  ++ ++l+  +l+e+ i+G++++   +++++a++l+a
  KKY17425.1 303 QTAIYAASPGGAVLLVGMgVPVQT-LPLGAAALREVDIIGVFRYA--NAYPAAIALFA 357
                 *****************9544444.********************..******99987 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.2   4.1e-11   9.2e-08       3      64 ..     167     226 ..     165     243 .. 0.84
   2 !   13.2   0.0   2.1e-05     0.047      99     201 ..     287     384 ..     239     400 .. 0.69

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 4.1e-11
  Glu_dehyd_C   3 vgvLvEPisiveKaielaeasrsafewepesalvlGaGslGLLalalleaeerglervyvlg 64 
                   g LvEP++++  ai+  ++s  + + + +salvlGaG++G+L++a+l++  +g++ +++ +
   KKY17425.1 167 QGALVEPLAVSLHAINRSMRSLPSQSLSGTSALVLGAGAVGILTAAALSV--QGVTSITIAD 226
                  589*********************************************98..5776665544 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.1e-05
  Glu_dehyd_C  99 eemdlvvEaTGsakhafeaiealapnGvaaLlGvpedsevevdggelhrelvleNkalvGsvNanrrhfeaavdtLaalpes.lldelvtkvvdldel 195
                  +    v+E+TG    +  ai a +p G + L+G+  + +    g +  re       ++G     ++++ aa++ +a+ + + + +++ t++  l e 
   KKY17425.1 287 HGYTRVFECTGIESCVQTAIYAASPGGAVLLVGMGVPVQTLPLGAAALRE-----VDIIGV-FRYANAYPAAIALFASGKLDgVAEKVCTHRFALGEG 378
                  445679***************************99887433333333333.....457774.456778888888887766542577888888888888 PP

  Glu_dehyd_C 196 eeAfed 201
                  +eAfe 
   KKY17425.1 379 KEAFEV 384
                  888874 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0     1e-07   0.00023      14      52 ..     191     229 ..     177     233 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1e-07
                 HHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  14 ekLrdskvllvGaGglGsellknLalsGvgkltlvDnDk 52 
                 + L+ ++ l++GaG++G   + +L   Gv ++t++D Dk
  KKY17425.1 191 QSLSGTSALVLGAGAVGILTAAALSVQGVTSITIADIDK 229
                 6789999******************************97 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.2e-06    0.0072       8      48 ..     191     231 ..     185     252 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.2e-06
                   S..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHH CS
  Shikimate_DH   8 eslkekkvlliGaGemaelvakhLlakgvkkvvvaNRtler 48 
                   +sl++  +l++GaG ++ l+a +L+ +gv+++++a  + +r
    KKY17425.1 191 QSLSGTSALVLGAGAVGILTAAALSVQGVTSITIADIDKSR 231
                   478999****************************9866655 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.3e-05     0.051       5      38 ..     200     234 ..     197     269 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.3e-05
                     EE--STTHHHHHHHHHHCT.SEEEEE-S-HHHHHH CS
  UDPG_MGDP_dh_N   5 viGlGYvGlvtaavlaeig.hevigvDideekvdk 38 
                     v+G+G vG+ taa+l+ +g   +++ Did+++ + 
      KKY17425.1 200 VLGAGAVGILTAAALSVQGvTSITIADIDKSRLEI 234
                     89*****************7789999****99864 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.1e-05     0.069       2      41 ..     199     236 ..     198     305 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.1e-05
                      EEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHH CS
  Sacchrp_dh_NADP   2 liiGaGsvGqavaellarhfdvdaeitvadrskekleala 41 
                      l++GaG+vG  +a  l+ ++     it+ad +k++le + 
       KKY17425.1 199 LVLGAGAVGILTAAALSVQGVT--SITIADIDKSRLEIAS 236
                      89******************98..9**********76544 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.7   0.00018       0.4       2      30 ..     196     224 ..     195     237 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00018
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEE CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlv 30 
                    t+ l+ GaG +G+++a  Ls +Gv ++ +
     KKY17425.1 196 TSALVLGAGAVGILTAAALSVQGVTSITI 224
                    6789********************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3015.06
//
Query:       KKY17426.1  [L=955]
Description: putative c6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-42  145.5   0.1    2.7e-42  144.9   0.1    1.2  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    3.1e-42  144.3   0.0    4.9e-42  143.6   0.0    1.3  1  adh_short       short chain dehydrogenase
    1.4e-08   34.1   0.2    1.5e-07   30.8   0.2    2.1  1  Fungal_trans    Fungal specific transcription factor domain
    2.1e-08   34.3   0.3    7.8e-08   32.4   0.1    1.9  2  KR              KR domain
    1.5e-05   25.0   7.4    2.8e-05   24.1   7.4    1.4  1  Zn_clus         Fungal Zn(2)-Cys(6) binuclear cluster domain
     0.0041   16.6   0.0      0.015   14.8   0.0    1.9  1  Epimerase       NAD dependent epimerase/dehydratase family
     0.0056   16.1   0.0     0.0091   15.4   0.0    1.3  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
  ------ inclusion threshold ------
       0.02   14.8   0.0      0.093   12.6   0.0    1.9  1  NAD_binding_10  NAD(P)H-binding


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   0.1   1.2e-45   2.7e-42       1     233 [.     712     954 ..     712     955 .] 0.93

  Alignments for each domain:
  == domain 1  score: 144.9 bits;  conditional E-value: 1.2e-45
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSEE........EE--TTSHHHHHHHHHHHHHHH.SSEEEEEE-----EGCSS- CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgaev........lecDVtdeeqvealveevvekf.gklDilvnnagiapklkgp 86 
                   Ga  gIG+a+A++la++G++++lt+ ++++  ++ + el+++l+++v         ++D ++ +++e+l+  +++ + +  Dil+ nag+ ++   +
    KKY17426.1 712 GASGGIGAACARKLASQGCHLALTYSSNKDavDDLISELTASLDSTVsatqkfssHKADMSSATNLEDLFPSITSIHsKVPDILISNAGHGRR-IPE 807
                   8999*********************9999878899999999999774456777999*******************994556************.99* PP

                   GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--B.HCTGGG CS
  adh_short_C2  87 fletsreefdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpi.kTlaas 180
                   +++++ +ef++++ vnl++ fll+++++p+m+++  g+i+ +ss++a  +  n  +y+a+K++l+++ r+l  +l+++gi+vN v+p +i +T +  
    KKY17426.1 808 IEDITLAEFEHTIRVNLTASFLLTQQCVPHMRSQhwGRIIFISSIAAYGGGINGCHYAASKGGLISMGRNLSTHLAKDGITVNDVAPAMIgETGMIP 904
                   *****************************9999889******************************************************5566666 PP

                   GSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 181 gikgfdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   ++k f e      + +p+grlgt++evaea+ +++ +   yitGq l + gGl
    KKY17426.1 905 DAK-FLEGTPGDVKGIPVGRLGTTKEVAEAVSMFIKNG--YITGQSLLMSGGL 954
                   665.89999999***********************965..************7 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.6   0.0   2.2e-45   4.9e-42       2     186 ..     707     902 ..     706     907 .. 0.94

  Alignments for each domain:
  == domain 1  score: 143.6 bits;  conditional E-value: 2.2e-45
                 EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT.......TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSE.SEEEE---S.S-- CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee.......gakalaiqvDvtdreevealvekavkklgkl.dvLvnNAGi.tgs 90 
                  +l+tGas+GIG a+a++la++G+++++ ++++++++  +++el +         +k+   ++D+++++++e+l+  + + + k+ d+L+ NAG   + 
  KKY17426.1 707 LALITGASGGIGAACARKLASQGCHLALtYSSNKDAVDDLISELTASldstvsaTQKFSSHKADMSSATNLEDLFPSITSIHSKVpDILISNAGHgRRI 805
                 59**************************9999***********9998776666566789999********************9999*********7778 PP

                 SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS.SHH CS
   adh_short  91 gpfselseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvd.Tdm 186
                  ++++++ +e+e +i vNlt+ fllt++++p+m +q++GrI+++sS+a+  + ++++ Y+AsK++++++ r+l+  la++gi+vn vaP+++  T+m
  KKY17426.1 806 PEIEDITLAEFEHTIRVNLTASFLLTQQCVPHMRSQHWGRIIFISSIAAYGGGINGCHYAASKGGLISMGRNLSTHLAKDGITVNDVAPAMIGeTGM 902
                 899*****************************************************************************************88988 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.2   6.6e-11   1.5e-07      87     175 ..     269     365 ..     221     423 .. 0.69

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 6.6e-11
  Fungal_trans  87 pssslwilqsLlll.elyektssdralher...........hhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlww.aaFylDktialkl 170
                    +++++++++Llll e++  ++  +++h             h+g+a+r  + lgL r ++++++     l e++a sr+Rl+w ++++ D++i+   
    KKY17426.1 269 TDCDVEAVEALLLLaEWVPHGLR-KSGHAVgrgeedrtawmHVGIALRTGYYLGLDRTSFRSED-----LEEAKAISRKRLAWtCCYISDRLISCRI 359
                   46779999977555156655555.34444344555555555**********************5.....************99678*********99 PP

  Fungal_trans 171 Grpp.l 175
                   G  +  
    KKY17426.1 360 GKAFwS 365
                   987743 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.1   3.5e-11   7.8e-08       4     152 ..     709     867 ..     707     871 .. 0.82
   2 ?   -2.2   0.0       1.5   3.3e+03       7      24 ..     869     886 ..     868     889 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 3.5e-11
                 EEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS..--HHHHHHHHHHHHTT-...EEEE----TT-HHHHHHHHHHHHHHSS---EE.EE-------.-- CS
          KR   4 litGGlGgLGlelarwlaekg.arhlvllsRsaaadedskaliaelealga...evevvaaDvsdkdavealleeikaeeppikGv.ihaAgvlrd.kl 96 
                 litG+ Gg+G + ar la++g    l + s + a+d+  ++l+a+l ++     + +  +aD s+++++e l+ +i++ ++++  + i  Ag+ r    
  KKY17426.1 709 LITGASGGIGAACARKLASQGcHLALTYSSNKDAVDDLISELTASLDSTVSatqKFSSHKADMSSATNLEDLFPSITSIHSKVPDIlISNAGHGRRiPE 807
                 9********************455555555555555555566666655422345788899****************99999998874678999885167 PP

                 TTT--HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHH CS
          KR  97 leemtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaa 152
                 +e+ t +++e+ ++  ++++  L + + +    ++   ++++SSia+  g    ++Yaa 
  KKY17426.1 808 IEDITLAEFEHTIRVNLTASFLLTQQCVPhmrsQHWGRIIFISSIAAYGGGINGCHYAAS 867
                 ***********************9987666766888899******************995 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.5
                 TTTSHHHHHHHHHHHHHH CS
          KR   7 GGlGgLGlelarwlaekg 24 
                 GGl ++G+ l+++la++g
  KKY17426.1 869 GGLISMGRNLSTHLAKDG 886
                 9999***********998 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   7.4   1.3e-08   2.8e-05       1      31 [.       6      40 ..       6      46 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.3e-08
                SS-HHHHHCT---ST....SSSS-HHHHHCTHHHC CS
     Zn_clus  1 haCdnCrkkKvKCda....kkPaCsnCkklnleCt 31
                +aC  Cr++K+KCd     + P C++C k   +C+
  KKY17426.1  6 RACLFCRQRKSKCDLdvsgGAPPCGRCLKDKRDCV 40
                59*************99998888***********8 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.6e-06     0.015       1     120 [.     708     856 ..     708     863 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.6e-06
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..............EEEE--TT-HHHHHHHH......HHHT-SEEEE--S.---HH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl..............elveldltdrsalerlf......keeqpdavihlAa.vggva 78 
                 +l+tGa+G iG+a +++l+++g ++    + +++    ++ +l              + +++d+  +++le+lf      +++ pd+ i  A+    ++
  KKY17426.1 708 ALITGASGGIGAACARKLASQGCHLALTYSSNKDAVDDLISELtasldstvsatqkfSSHKADMSSATNLEDLFpsitsiHSKVPDILISNAGhGRRIP 806
                 59********************8866555554444444444447999999*****99999999999999999882222223345666666666444444 PP

                 H....HHHSHHHHHHHHTHHHHHHHHHHH....HHTCTEEEEEEEGGGGT CS
   Epimerase  79 a....ssedpadfieknlqgtlnlleaar....kagvkrllflsSsevYG 120
                 +    +  + + +i+ nl  +  l + +      ++  r++f+sS + YG
  KKY17426.1 807 EiediTLAEFEHTIRVNLTASFLLTQQCVphmrSQHWGRIIFISSIAAYG 856
                 31111223334455555554444444444333233444888888888887 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.1e-06    0.0091       1      73 [.     709     783 ..     709     787 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.1e-06
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT.....TTGCCEEEEE--TT-HHHHHHHHHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakd..pkeeleenlklhkgDltDssslerllae 73 
                    LiTG +G iG+  a++L ++g +   +   ++    + i++l+ +    ++++++++ hk+D++ +++le+l+ +
     KKY17426.1 709 LITGASGGIGAACARKLASQGCHLALTYSSNKDAVDDLISELTASldSTVSATQKFSSHKADMSSATNLEDLFPS 783
                    9*********************999998888887777777776541144556679****************9966 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.2e-05     0.093       1     102 [.     712     855 ..     712     863 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.2e-05
                     TTTSHHHHHHHHHHHHC-T-EEEE.EETTHHHCH............HHHCTTTCEEEE--TT-CCHHHHHHT........T-SEEEES---TCC. CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevta.lvRnpekla............eleaeeglevvegdvtdvedlaealk........gadaVvsalggggk. 73 
                     GA+G++G + +++l+++g  ++ + +  n++ ++             ++a+++ +  ++d++++  l++ +           d+ +s++g+g++ 
      KKY17426.1 712 GASGGIGAACARKLASQG-CHLALtYSSNKDAVDdliseltasldsTVSATQKFSSHKADMSSATNLEDLFPsitsihskVPDILISNAGHGRRi 805
                     9****************8.4444415677888883334333333333334445555566666666666555433333332335566666766665 PP

                     ....HHHH...................HHHHHHHHHHCT--EEEEEEETTTT CS
  NAD_binding_10  74 ....deeg...................aknivdaakeagvkRfvlvsaigvg 102
                         d  +                   ++++v  ++ ++  R++++s+i ++
      KKY17426.1 806 peieD--ItlaefehtirvnltasfllTQQCVPHMRSQHWGRIIFISSIAAY 855
                     55441..16677777789999999999*********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (955 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.46
# Mc/sec: 6240.10
//
Query:       KKY17427.1  [L=1188]
Description: putative tubulin-specific chaperone [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-24   85.0   1.7    1.5e-23   83.6   0.1    2.6  4  TFCD_C         Tubulin folding cofactor D C terminal
    0.00049   20.1   9.6       0.27   11.6   0.0    6.4  6  HEAT           HEAT repeat
     0.0053   17.1   6.9      0.028   14.8   0.2    4.8  5  HEAT_2         HEAT repeats
  ------ inclusion threshold ------
      0.038   13.1   2.5       0.05   12.7   0.5    2.1  2  IFRD           Interferon-related developmental regulator (IF
       0.16   12.6   0.2        2.3    8.9   0.0    2.9  3  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region


Domain annotation for each model (and alignments):
>> TFCD_C  Tubulin folding cofactor D C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.98   3.5e+03     145     181 ..     276     311 ..     230     320 .. 0.58
   2 ?   -2.0   0.0      0.75   2.7e+03     105     105 ..     339     339 ..     253     411 .. 0.62
   3 ?   -3.8   0.0       2.6   9.4e+03      77     100 ..     740     763 ..     714     766 .. 0.67
   4 !   83.6   0.1   4.3e-27   1.5e-23       2     189 .]     956    1148 ..     955    1148 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.98
      TFCD_C 145 PllktldlLlesgvleelaeees.sflekllkllqkel 181
                  ll tl++L  sg++++  +++  +f++ +++++ +++
  KKY17427.1 276 HLLGTLSVL--SGLFKSGSDDDMaPFAQSCFDICYQAA 311
                 444444444..577777777776778888888887765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.75
      TFCD_C 105 a 105
                 a
  KKY17427.1 339 A 339
                 1 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 2.6
      TFCD_C  77 peyresvleGlvvSvGglteslvk 100
                 ++++++  + lv+Sv +  + l k
  KKY17427.1 740 SDLMYEACSALVTSVCSAKDVLSK 763
                 678888999999999888877766 PP

  == domain 4  score: 83.6 bits;  conditional E-value: 4.3e-27
      TFCD_C    2 kiigallkqavEKiDrvRavAgkvlqrllhndpakipsiphreelekifpeeeeedlnwnspse..vfprlvqLLqlpeyresvleGlvvSvGglte 96  
                  +ii  l+k+a+EK+D+vR +A+++l+  ++ +      ++  e   +++p +  + ++++++s   +f +l+ LL++p+   ++l+Gl++S  ++te
  KKY17427.1  956 RIIPLLAKLAAEKLDKVRYQAWTCLEIWWQYN------LESNESSFTLLPIS-HQIHHVAETSFptYFLQLLNLLSHPDIHLPLLQGLTSSTCAGTE 1045
                  79999*******************87776664......33344444444444.111222322223267778888899******************** PP

      TFCD_C   97 slvkassqaLleylkeles....kadeeeleslleeliklleenkkddRvvvPllktldlLlesgvleelaeees......sflekllkllqkelkk 183 
                   ++++s++aL++yl +++       ++++  +ll++l ++l++ + ddR+++P+l+ + +Ll + +     + +s      + +++l+ l+qk ++k
  KKY17427.1 1046 LIIRSSRSALVTYLLSIRFsstpFMSSSFEHHLLSSLTQILNTTLLDDRYALPTLSLIGFLLTQTLTGLDPTVPSlptsttQTYKTLFLLVQKSHFK 1142
                  **************66655556777888999*******************************999887666666678888888************** PP

      TFCD_C  184 sknvqk 189 
                  ++++++
  KKY17427.1 1143 TSSIPR 1148
                  ***986 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.1   7.6e+03       2      11 ..      74      83 ..      74      85 .. 0.91
   2 !   11.6   0.0   7.7e-05      0.27       3      28 ..     367     392 ..     365     395 .. 0.90
   3 ?    0.3   0.0      0.33   1.2e+03      16      29 ..     499     512 ..     498     514 .. 0.86
   4 ?   -2.7   0.1       2.9     1e+04       7      27 ..     553     573 ..     538     574 .. 0.72
   5 ?    4.5   0.0     0.015        53      10      29 ..     632     651 ..     625     653 .. 0.85
   6 ?    3.6   0.0     0.027        98       1      24 [.     957     980 ..     957     985 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.1
                HHHHHHHHT- CS
        HEAT  2 lPlllkllsD 11
                lP +++ll+D
  KKY17427.1 74 LPSFISLLND 83
                79*******9 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 7.7e-05
                 HHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgala 28 
                 ++ll+ l D++  +R aA kaL  + 
  KKY17427.1 367 DCLLQSLGDKDTPIRFAASKALSMIT 392
                 799*******************9885 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.33
                 HHHHHHHHHHHHHH CS
        HEAT  16 VReaAakaLgalae 29 
                 VR+aA+  + al++
  KKY17427.1 499 VRDAACFGIWALSR 512
                 9******9998876 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 2.9
                 HHHT-SSHHHHHHHHHHHHHH CS
        HEAT   7 kllsDpspeVReaAakaLgal 27 
                 +++ D+s ++R+ +  aL +l
  KKY17427.1 553 SACLDSSGNIRRGSSAALQEL 573
                 456678888888777777766 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.015
                 T-SSHHHHHHHHHHHHHHHH CS
        HEAT  10 sDpspeVReaAakaLgalae 29 
                 ++ ++e R+ Aa+a+g++++
  KKY17427.1 632 KSADSESRRVAALAIGRFCR 651
                 6778888***********96 PP

  == domain 6  score: 3.6 bits;  conditional E-value: 0.027
                 HHHHHHHHHT-SSHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaL 24 
                 ++Pll kl   +  +VR+ A  +L
  KKY17427.1 957 IIPLLAKLAAEKLDKVRYQAWTCL 980
                 79*****99999999********9 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   7.8e-06     0.028      20      60 ..     354     393 ..     334     412 .. 0.74
   2 ?   -2.0   0.0       1.4   4.9e+03      41      65 ..     556     582 ..     536     605 .. 0.58
   3 ?    0.3   0.0      0.25   9.1e+02      10      29 ..     632     651 ..     608     669 .. 0.65
   4 ?   -1.9   0.0       1.3   4.5e+03      13      27 ..     865     879 ..     855     894 .. 0.76
   5 ?    0.4   0.0      0.25     9e+02      29      55 ..     954     980 ..     930     992 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.8e-06
      HEAT_2  20 airaLgrignpealpaLvellededpavRraaaeaLgaigd 60 
                   ++L+r+ + +a+++L++ l d+d+ +R aa +aL+ i +
  KKY17427.1 354 NSDQLARLLE-DAVDCLLQSLGDKDTPIRFAASKALSMITL 393
                 4555665555.7************************98863 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
      HEAT_2  41 ededpavRraaaeaLgai.g.dpealp 65 
                  d++ ++Rr    aL ++ g +p++++
  KKY17427.1 556 LDSSGNIRRGSSAALQELiGrHPDTIQ 582
                 455556666666666554331355554 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.25
      HEAT_2  10 ndpdpevrraairaLgrign 29 
                 +++d e rr a+ a+gr+  
  KKY17427.1 632 KSADSESRRVAALAIGRFCR 651
                 45566666666666665433 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.3
      HEAT_2  13 dpevrraairaLgri 27 
                  +ev+++air+L++ 
  KKY17427.1 865 PTEVKIMAIRTLADA 879
                 568899999999853 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.25
      HEAT_2  29 npealpaLvellededpavRraaaeaL 55 
                 n++++p+L +l+  +   vR++a + L
  KKY17427.1 954 NERIIPLLAKLAAEKLDKVRYQAWTCL 980
                 467888888888888888888887776 PP

>> IFRD  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5   1.4e-05      0.05     178     249 ..     314     391 ..     195     405 .. 0.70
   2 ?   -1.4   0.1      0.27   9.6e+02      45      72 ..     823     850 ..     785     858 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.4e-05
        IFRD 178 dgqsieaadsaska.........lvtaalsawglLltllpssklnkkleedl....eealealvelLdssdvevriAAGeaiALl 249
                 d +s                   l   +l+a +l   l++s++ +k+++++l    e+a++ l + L ++d+ +r+AA++a+ ++
  KKY17427.1 314 DSTSSH-------GlnssansrkLFIKILRAIALKSILMESKDQRKMNSDQLarllEDAVDCLLQSLGDKDTPIRFAASKALSMI 391
                 222222.......1233455567***********9999999999999999999999999999999999*************9887 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.27
        IFRD  45 delteksaktReaaLesllellsshyle 72 
                 ++l   s+k+R++aL + ++ll+  ++ 
  KKY17427.1 823 KKLRVFSSKGRISALGAVVNLLNAALAS 850
                 44556799**********9999887765 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         4   1.4e+04      48      66 ..     112     130 ..     111     132 .. 0.86
   2 ?    8.9   0.0   0.00063       2.3      20      58 ..     357     395 ..     335     411 .. 0.78
   3 ?   -1.1   0.0      0.84     3e+03      24      49 ..     953     978 ..     943     987 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4
  Vac14_Fab1_bd  48 cEslyniakvakgevlkll 66 
                    c  ly  +kv  ++v+  +
     KKY17427.1 112 CKLLYTFCKVRGQKVIVRF 130
                    8899******999999876 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00063
  Vac14_Fab1_bd  20 kikeyleeivkpvlkcfsDkdsrvRyyacEslyniakva 58 
                    ++++ le+ v+ +l+++ Dkd+ +R+ a+ +l  i+ ++
     KKY17427.1 357 QLARLLEDAVDCLLQSLGDKDTPIRFAASKALSMITLKL 395
                    3889999***********************998876554 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.84
  Vac14_Fab1_bd  24 yleeivkpvlkcfsDkdsrvRyyacE 49 
                    + e+i++ + k   +k ++vRy a  
     KKY17427.1 953 FNERIIPLLAKLAAEKLDKVRYQAWT 978
                    66788988889999999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.44
# Mc/sec: 8062.66
//
Query:       KKY17428.1  [L=518]
Description: hypothetical protein UCRPC4_g05570 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
        0.1   11.9   0.1       0.17   11.2   0.1    1.2  1  30K_MP_C_Ter  C-Terminal of 30K viral movement proteins


Domain annotation for each model (and alignments):
>> 30K_MP_C_Ter  C-Terminal of 30K viral movement proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   9.2e-06      0.17      36      87 ..      88     143 ..      75     156 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.2e-06
  30K_MP_C_Ter  36 lrrreg.kgvkietetrsssssdgetllee...arksvslniskfladqrrapppp 87 
                    +r+ g     ++ e    s  dg tlle    a  + s  isk   d++r pppp
    KKY17428.1  88 KKRKTGqDEAYVDEEGDLDSELDGSTLLETpqaAAGARSTPISKATKDRKRMPPPP 143
                   344444145678889999999*******9722245567999**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3666.80
//
Query:       KKY17429.1  [L=1076]
Description: putative dna polymerase delta catalytic subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.1e-147  492.5   3.4   1.6e-147  492.0   3.4    1.3  1  DNA_pol_B       DNA polymerase family B
    1.9e-70  237.7   0.0      4e-68  230.0   0.0    2.7  2  DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
    1.6e-18   66.9   5.9    3.4e-18   65.9   5.9    1.6  1  zf-C4pol        C4-type zinc-finger of DNA polymerase delta
    0.00095   19.2   0.2     0.0091   16.0   0.2    2.6  1  RNase_H_2       RNase_H superfamily
     0.0014   17.6   0.4       0.12   11.3   0.0    2.4  2  DNA_pol_B_2     DNA polymerase type B, organellar and viral
  ------ inclusion threshold ------
      0.038   13.7   0.0      0.079   12.6   0.0    1.4  1  DNA_pol_B_exo2  Predicted 3'-5' exonuclease related to the ex
      0.046   13.5   0.0       0.11   12.3   0.0    1.6  1  ETC_C1_NDUFA5   ETC complex I subunit conserved region
       0.27   11.1   9.5        0.1   12.5   0.8    2.6  2  C1_1            Phorbol esters/diacylglycerol binding domain 


Domain annotation for each model (and alignments):
>> DNA_pol_B  DNA polymerase family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  492.0   3.4  7.1e-151  1.6e-147       1     459 []     509     940 ..     509     940 .. 0.97

  Alignments for each domain:
  == domain 1  score: 492.0 bits;  conditional E-value: 7.1e-151
                 S-HHHHHHS-HHHHHHHHHHHHHHHTTBE-B-----.--SS.-S----BE----EEESS-EEEEEETTHHHHHHHHTT-STTTCE-HCCHCC.T--BTT CS
   DNA_pol_B   1 iplsrvledgqqirveslLlrlakeegfilpdrtekkgkeeegYqGatVlePkkglydkpvlvlDFaSLYPsiiqahNlcyttlvaseeeak.eleaed 98 
                 +p++++l++gqq++  s+L+r+a e+++++p+ +++ ++ee +Y+GatV+eP++g+yd pv++lDFaSLYPsiiqahNlcyttl+++++ +k +l+++ 
  KKY17429.1 509 VPFNYLLSRGQQVKFISQLFRKALEQQLVIPNLANE-ASEE-QYEGATVIEPTRGYYDVPVATLDFASLYPSIIQAHNLCYTTLLNKASIEKlNLKKD- 604
                 578999*************************87777.4444.6*******************************************999988777765. PP

                 ...TEEE-TCC-EEE-TTS---HHHHHHHHHHHHHHHHHHHHHCS--HHHHHHHHHHHHHHHHHHHHHHHHHTSTTSTT--HHHHHHHHHHHHHHHHHH CS
   DNA_pol_B  99 eyleveveprlvefvkksvregllpklLkdllakRkaikkelkeekdefekalldkqQlalKvtaNsvYGftGvansrlpclalAasvTtiGRemLekt 197
                   +++ v+p+++ f++ +vr+gll ++L++ll +Rk++kkel+ e+d+f+ka+l+ +QlalK++aNsvYG+tG++ ++lpcla+A+s T++GR+m+ekt
  KKY17429.1 605 --EDFIVTPNGDMFCTIKVRKGLLTQILEELLGARKRAKKELAVETDPFKKAVLNGRQLALKISANSVYGITGATVGKLPCLAIASSTTSYGRQMIEKT 701
                 ..5************************************************************************************************ PP

                 HHHHHHT...SSGGGT-SS.....T-EEEEEBSSEEEEE-S-SSHHHHHHHHHHHHHHHHT.TSTTT--EEEEEEEEEEEEEETTEEEEEEEEESSTTS CS
   DNA_pol_B 198 kelvekkaellskllalpeeaeeeklkviYGDTDSvfielkvkdveellkigkelaeevseklfkkplklefekvykkllLisKKkYaglkvektskan 296
                 k+ ve+k   ++  +++++     +++viYGDTDSv+++++ k++++++++g+e+a +vs+ +f kp+klefekvy+++lLi+KK+Yagl++++++k++
  KKY17429.1 702 KDEVEAK---YTIANGYSH-----DAQVIYGDTDSVMVKFGEKELAKTMELGQEAADYVSS-KFIKPIKLEFEKVYFPYLLINKKRYAGLYWTNSNKYD 791
                 *****99...778888998.....*************************************.9************************************ PP

                 EEEEESSGGGSTTS-HHHHHHHHHHHHHHSSS....S-HHHHHHHHHHHHHHHHHHHHTT-S-GGGG-EEEEESS.CCCSSGCCSHHHHHHHHHHHHC. CS
   DNA_pol_B 297 klliKGvdlvRrdncklvkevikkvlelllkdeteersleeglealksilkdvleeleenkvplekfvlskelskepenyksknlphlevakrlkkrn. 394
                 k+++KG+++vRrdnc+lv++vi++vl+++l d    r+l+ +  ++k+++    ++l +n+v+++k+v++k+lsk  ++y++k+ +h+e+a+r+kkr+ 
  KKY17429.1 792 KMDSKGIETVRRDNCRLVQTVIETVLRKILID----RDLDGAQSYVKDTI----SDLLQNRVDMSKLVITKALSK--SDYTAKQ-AHVELAERMKKRDa 879
                 ********************************....****9999999999....9********************..7***999.*************9 PP

                 SS---TTCEEEEEEBETSS.....SS-GGGTEEEHHHHHHCCSEB-HHHHHH.TTHHHHHHHHTTS CS
   DNA_pol_B 395 eeapevgdrisYvivekkkevkkknllaseraedpeyvleknlpidieyYls.qllkevarlleai 459
                 ++ap +gdr++Yv+v+ +      +++++er edp +vle+n+pid++yYl+ ql++++ r++e+i
  KKY17429.1 880 GSAPALGDRVAYVMVKGAA-----GSKNYERSEDPIFVLENNIPIDTKYYLEnQLANPLGRIFEPI 940
                 9****************97.....9**************************************986 PP

>> DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.0   0.0   1.8e-71     4e-68       2     337 .]     130     445 ..     129     445 .. 0.91
   2 ?   -3.5   0.0       1.9   4.2e+03     106     141 ..     817     852 ..     814     866 .. 0.71

  Alignments for each domain:
  == domain 1  score: 230.0 bits;  conditional E-value: 1.8e-71
                     ECTTSEEEEEEEE---EEEEEESSCGGHHHHHHHHHHHCCTTCCCEE.EEEEEECCCCEECCTSSCCHHC.EEEEEESSTCHHHHHHHHHHH... CS
  DNA_pol_B_exo1   2 teegksvcvnvfgfkpyfYceapdgkeleevkeelkelyeelskkvt.kivkvelvlkkslygyekkpvp.ylkvsvsnpnelkkirkelsp... 91 
                     te g+sv+ +v++f +y+Y++ap ++ +++++ + + l+ +l +  + +i +v+ v++++lyg++ ++++ ylkv+v++p++++++r+++++   
      KKY17429.1 130 TETGHSVLLHVTDFLHYLYVAAPVSFAPSDCQGYKAFLETQLAQH-QpAIHSVQMVMRENLYGFQGNQKSpYLKVTVTDPRHINRLRTTIEKgga 223
                     899********************9999877766655555555444.26*******************9999*******************99999 PP

                     ........CCCCCCCCSSS--HHHHHHHHCTS-TTCEEEEETEEEEGCC--C-.SEEEEEETTTSCEETTTCC....S-EEEEEEEEEETEETTS CS
  DNA_pol_B_exo1  92 ........leeivdvyeydvdylerflidnkivgfgwysvkkylvraegkisncdveidcdvddliakpkese....pplrvlsFDIeckskkgk 174
                              e ++ +++ +++y  rf+id +i+                          c+++dlia+ +++e    +plrvlsFDIec+++kg 
      KKY17429.1 224 nykglwktVEGGILTFD-SIQYVLRFMIDTGIEA------------------------YCHYRDLIAHANDGEwakmAPLRVLSFDIECAGRKGV 293
                     99999999888999999.9999999999999865........................5777888888888888888****************** PP

                     EETTTT..--EEEEEEEECCTC.SS.SEEEEEEECCCTSS----EE--SSTCSTTEEEEEESSHHHHHHHHHHHHHHH--SEEEESSTTTTHHHH CS
  DNA_pol_B_exo1 175 fpdaensedpiiqIscvldglgekepearklftlrecaseeeedfeltpkpeypgvkvlefdsEkelLqaflefikqydPdvitgYNidnFDlpY 269
                     fp+a++  dp+iqI+ v+  +ge++p+ r++f+l++c+             +  ++++lef++E ++L+a+ +f+ ++dPdvi+gYNi nFD+pY
      KKY17429.1 294 FPEANQ--DPVIQIANVVTRYGESKPFIRNVFVLDTCS------------LI-VNTQILEFAEEDKMLMAWRDFLEKVDPDVIIGYNIANFDFPY 373
                     ******..******************************............55.999*************************************** PP

                     HHHHHHHCCTCCHCG.SCCSCTCEECCCCESEE.....EEEECEEEETTSEEEEHHHHHHHHSSSSG-SHHHH CS
  DNA_pol_B_exo1 270 ilnRakelykvklsklgrlnkggrskvseigfs.....kqarekvkisgrihlDlyrvvkrklklpsYkLnav 337
                     +l+Rak+l+  k++  +rl +  +s  ++++fs     ++ +++ +++gri+lDl+++++r+ +l+sY+Ln+v
      KKY17429.1 374 LLDRAKHLKCTKFPYWTRL-RSVVSSHKDTNFSskqmgNRDTKSTNTNGRIQLDLLQLIQRDHHLRSYTLNSV 445
                     *******************.777777777777777789*********************************98 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.9
                     HHHHHHHCTS-TTCEEEEETEEEEGCC--C-.SEEE CS
  DNA_pol_B_exo1 106 lerflidnkivgfgwysvkkylvraegkisncdvei 141
                     l+++lid+++ g++ y  +  +   +++++ +++ i
      KKY17429.1 817 LRKILIDRDLDGAQSYVKDTISDLLQNRVDMSKLVI 852
                     788999***999999977655555566665555544 PP

>> zf-C4pol  C4-type zinc-finger of DNA polymerase delta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   5.9   1.5e-21   3.4e-18       1      70 []     978    1052 ..     978    1052 .. 0.87

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 1.5e-21
    zf-C4pol    1 ClvCk....eklk..kalCkkCrsdkqes.llkllsrlkelekklneletvCqsCaqgsleeevkCdsrdCpvfYeR 70  
                  C++Ck     kl+   a+C++Cr  +  + ++k+l+++++le ++ +l+t+Cq+C qgs++ ev C+srdCp+fY+R
  KKY17429.1  978 CMGCKkplvGKLEaaGAVCENCR-PRLGElYTKTLNKVSDLEVRFGRLWTQCQRC-QGSMHCEVICSSRDCPIFYMR 1052
                  *****55552333679******8.555555*************************.9*******************9 PP

>> RNase_H_2  RNase_H superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2     4e-06    0.0091      47     162 ..     348     491 ..     321     495 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4e-06
   RNase_H_2  47 ilelflellekkkalvtfngksFDvpflkrlfkkyklde..................................eefrhiDLlkelrk.kklesysLksv 110
                 +++ fle   + + ++ +n ++FD+p+l +++k  k+ +                                  + + ++DLl+ +++ ++l+sy L sv
  KKY17429.1 348 AWRDFLE-KVDPDVIIGYNIANFDFPYLLDRAKHLKCTKfpywtrlrsvvsshkdtnfsskqmgnrdtkstntNGRIQLDLLQLIQRdHHLRSYTLNSV 445
                 3344433.3455789*****************7777777788999**********9999999999999888777779******99553888*******9 PP

   RNase_H_2 111 ekelgierreedlsGsqavklyqeylrtgdeellekilaYNedDvralatly 162
                  +e+  e++ ed+   ++ +l++     g +++ ++++ Y+ +D    ++l+
  KKY17429.1 446 CAEFLGEQK-EDVHHTMITELFN-----GTPDSRRRLAVYCLKDAYLPQRLM 491
                 999888888.6888887777764.....555555666666666655555555 PP

>> DNA_pol_B_2  DNA polymerase type B, organellar and viral
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   5.2e-05      0.12     208     318 ..     545     656 ..     448     675 .. 0.68
   2 !    3.9   0.2    0.0087        19      78     109 ..     761     792 ..     750     807 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.2e-05
  DNA_pol_B_2 208 yiRkayrGGrc.ypsvlgiyeeniyvyDvnSlYPsamthypmPygkp...pfeeakavkeleeklee.....kfgffdakikppilkedalpplpirl 296
                  +  + y G  + +p+  g+y+ ++   D+ SlYPs+     + y++           +++l+ k +e     + g + ++ik  +       +l++ l
   KKY17429.1 545 ASEEQYEGATViEPT-RGYYDVPVATLDFASLYPSIIQAHNLCYTTLlnkA-----SIEKLNLKKDEdfivtPNGDMFCTIKVRKGLL--TQILEELL 634
                  345789999997777.*********************99999999973332.....33333333333345558888889998875444..48888888 PP

  DNA_pol_B_2 297 dicsrkggrliwpngelegewy 318
                    ++r +++l   + +++++++
   KKY17429.1 635 GARKRAKKELAVETDPFKKAVL 656
                  8888888888888887777665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0087
  DNA_pol_B_2  78 nleikKgkfpykavnelhliysyeqksdgfpv 109
                  +le++K +fpy  +n+ +  + y+++s+++ +
   KKY17429.1 761 KLEFEKVYFPYLLINKKRYAGLYWTNSNKYDK 792
                  5799***********************99965 PP

>> DNA_pol_B_exo2  Predicted 3'-5' exonuclease related to the exonuclease domain of PolB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.5e-05     0.079      35     163 ..     340     484 ..     302     487 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.5e-05
  DNA_pol_B_exo2  35 ssekelikkffegvekkkpq.lVsfngrgfDlpvleyralkhgvsapkyfdegded.........rekkwn...nylsr...ystr.hlDLmdll 112
                     ++e++++    +++ek  p  ++++n  +fD+p l  ra   + +   y+ + ++           +   +   n+ ++    + r  lDL++l+
      KKY17429.1 340 AEEDKMLMAWRDFLEKVDPDvIIGYNIANFDFPYLLDRAKHLKCTKFPYWTRLRSVvsshkdtnfSS---KqmgNRDTKstnTNGRiQLDLLQLI 431
                     45889999999999**9997368****************9999999999987664444443333322...1222333321112234589999999 PP

  DNA_pol_B_exo2 113 seygaranakLdelakllglPGKlgvdGskVaelyqe..gklkeireYcetDv 163
                      + +  ++  L+++++ +    K +v+   ++el++   ++ ++++ Yc  D+
      KKY17429.1 432 QRDHHLRSYTLNSVCAEFLGEQKEDVHHTMITELFNGtpDSRRRLAVYCLKDA 484
                     98888889999999988777889999999999999752256778888887775 PP

>> ETC_C1_NDUFA5  ETC complex I subunit conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.1e-05      0.11       3      24 ..     994    1015 ..     993    1017 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.1e-05
  ETC_C1_NDUFA5    3 avhpnPreaLialytktLkkLk 24  
                     av++n r++L +lytktL+k++
     KKY17429.1  994 AVCENCRPRLGELYTKTLNKVS 1015
                     79******************97 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.8   4.5e-05       0.1       7      35 ..     971    1000 ..     968    1003 .. 0.91
   2 ?    2.0   2.3     0.084   1.9e+02      25      44 ..    1022    1043 ..    1015    1048 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.5e-05
                  --SS--B-TTT-SB--S.SSS-EEEETTT- CS
        C1_1    7 nfkqptfCkhCgeflwg.kekqglkCswCk 35  
                  ++k++++C  C+++l g +e  g  C++C+
  KKY17429.1  971 FTKKTQTCMGCKKPLVGkLEAAGAVCENCR 1000
                  56899************************6 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.084
                  SS-EEEETTT--EE-CC..CCT CS
        C1_1   25 ekqglkCswCkllvHkk..Che 44  
                  ++ + +C+ C+ ++H +  C +
  KKY17429.1 1022 GRLWTQCQRCQGSMHCEviCSS 1043
                  566889*********8877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1076 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      622  (0.0346924); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.51
# Mc/sec: 6350.85
//
Query:       KKY17430.1  [L=189]
Description: hypothetical protein UCRPC4_g05572 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.48
# Mc/sec: 1183.61
//
Query:       KKY17431.1  [L=258]
Description: putative catechol dioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-39  134.7   0.0    2.9e-39  134.4   0.0    1.1  1  Dioxygenase_C    Dioxygenase
    8.8e-07   28.7   0.0    1.4e-06   28.1   0.0    1.3  1  Dioxygenase_N    Catechol dioxygenase N terminus
  ------ inclusion threshold ------
      0.011   15.9   0.0      0.055   13.7   0.0    2.0  1  CarboxypepD_reg  Carboxypeptidase regulatory-like domain
      0.054   13.8   0.1          6    7.2   0.1    2.6  2  MetallophosN     N terminal of Calcineurin-like phosphoestera
       0.11   13.3   0.0        0.2   12.4   0.0    1.4  1  TTR-52           Transthyretin-like family


Domain annotation for each model (and alignments):
>> Dioxygenase_C  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   0.0     8e-43   2.9e-39       2     180 ..      40     221 ..      39     223 .. 0.91

  Alignments for each domain:
  == domain 1  score: 134.4 bits;  conditional E-value: 8e-43
                    --S--EET--EEESEEE---S--TT--EEEEEEEEE-TTSSB-TT-EEEEE---TTS--TTS-TTS-SSTTTTEEEEE--TTSEEEEEEE----EE CS
  Dioxygenase_C   2 egPlyveeapededlarledkgeeegerlvlsGrvldeaGkplagalvelWhanaeGrYshkkeeheapelnlrgriltdeeGryrirtikPapYp 97 
                     gP+++ ea+ +++  ++++  +++g++l++  ++ d++G+p++g  v++W+++++G Y+ ++e++    ++ r  + +de+G + ++ i P +Yp
     KKY17431.1  40 LGPFHTLEAELKTNGESMSH--DPNGKPLLVLCNIKDTNGQPIEGVNVDIWETDSSGKYDVQHEDYG--GPDGRCVMKSDEKGVFWFKGIVPVSYP 131
                    58888888888888888877..9**************************************999954..5566777779***************** PP

                    --TTSHHHHHHHHTT---EE-SEEEEEEE-TTB--EEEEEEETT-TTTTS-TT----TTTEE--EEE-SH.......S-.EEEEE--EE- CS
  Dioxygenase_C  98 ipndGptgklldalgrhawRPaHiHfsvsapghrklvTqlyfegdkyladdivsaakeeLiaeleesede.......eekalelefdlvL 180
                    ip dGp+gk+l++  rh++RPaH+Hf+   +g+ +l+T ly++gd+y ++d v+++k++Li+++   ++e        e+ + l++d+v+
     KKY17431.1 132 IPYDGPVGKFLKQVYRHPYRPAHMHFMFQKEGYDHLITALYLRGDPYETSDAVFGVKNSLIVDMPPVDKEtaekygvAEDYAILKYDFVM 221
                    ***************************************************************988877767788877778888888886 PP

>> Dioxygenase_N  Catechol dioxygenase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   3.9e-10   1.4e-06      44      74 ..       4      34 ..       1      35 [. 0.90

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 3.9e-10
                   ...TT-HHHHHHHTTHHHHHHHHHHHHHHHT CS
  Dioxygenase_N 44 ddkrqEfiLlsdvLGlehlvdaindakeaga 74
                   +d r+EfiLlsdv+Gl+ lvd+i+++k+ ++
     KKY17431.1  4 SDLRKEFILLSDVFGLSLLVDSIDHPKPPQS 34
                   789***********************98765 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.5e-05     0.055       6      50 ..      72     130 ..      69     134 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
  CarboxypepD_reg   6 VtdasgapiagatVtvtnadtg..............tvastttdadGafrlrglppgty 50 
                      ++d++g+pi+g++V +  +d++               +  +++d++G f+++g+ p +y
       KKY17431.1  72 IKDTNGQPIEGVNVDIWETDSSgkydvqhedyggpdGRCVMKSDEKGVFWFKGIVPVSY 130
                      689*************98876657777777777766678889**********9999887 PP

>> MetallophosN  N terminal of Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0017         6       4      34 ..      73     100 ..      71     104 .. 0.84
   2 ?    3.9   0.0     0.018        64      17      33 ..     107     123 ..     106     155 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0017
  MetallophosN   4 t.skgkgvagVvVsDGvnvtkTdakGrYeLks 34 
                   + ++g++++gV V    ++ +Td++G+Y  ++
    KKY17431.1  73 KdTNGQPIEGVNV----DIWETDSSGKYDVQH 100
                   55899******98....7**********9875 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.018
  MetallophosN  17 DGvnvtkTdakGrYeLk 33 
                   DG  v+k+d+kG++ +k
    KKY17431.1 107 DGRCVMKSDEKGVFWFK 123
                   9999**********986 PP

>> TTR-52  Transthyretin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.6e-05       0.2       7      50 ..      76     119 ..      74     133 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.6e-05
                 TT-GGSS-EEEEEEHHHHTS--EEEEEE--TTSEEEEEEEE--- CS
      TTR-52   7 ggkpaknvkVkLwekdtldpddlldetkTdedGnFelsgsenel 50 
                 +g+p+++v+V++we d+  + d+  e++   dG+  ++++e+ +
  KKY17431.1  76 NGQPIEGVNVDIWETDSSGKYDVQHEDYGGPDGRCVMKSDEKGV 119
                 79***************999999999997777777777666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1854.66
//
Query:       KKY17432.1  [L=715]
Description: putative copper radical oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-33  113.1  30.6    6.3e-18   64.7  12.9    2.5  2  WSC             WSC domain
    1.1e-23   83.7   0.0    3.8e-23   81.9   0.0    1.8  2  Glyoxal_oxid_N  Glyoxal oxidase N-terminus
  ------ inclusion threshold ------
      0.025   14.9   0.0      0.067   13.5   0.0    1.7  1  DUF1929         Domain of unknown function (DUF1929)
      0.084   12.9   4.6          2    8.5   0.0    4.1  4  Kelch_2         Kelch motif
        2.4    8.6   0.0        2.4    8.6   0.0    4.5  5  Kelch_6         Kelch motif


Domain annotation for each model (and alignments):
>> WSC  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7  12.9   1.8e-21   6.3e-18       1      81 [.      57     136 ..      57     137 .. 0.98
   2 !   54.0   9.6   4.1e-18   1.5e-14       1      82 []     168     251 ..     168     251 .. 0.90

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 1.8e-21
         WSC   1 ylGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCG 81 
                 y+GCy d+  + r++  +++++s++t+e+C++ C a gy++ag+e++s+C+C + + ++a+ as+s+Cn++CsGdss +CG
  KKY17432.1  57 YQGCYVDN-ANGRAMAYQQTDSSSLTVESCITECVALGYTVAGMEYSSQCFCDDYVRNGATLASESECNMACSGDSSGICG 136
                 99******.89999999***************************************************************9 PP

  == domain 2  score: 54.0 bits;  conditional E-value: 4.1e-18
         WSC   1 ylGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgns...lpaaavkassssCnasCsGdssqtCGg 82 
                 y+GC+ d+   +r+++ +   ++++t  +C ++C+++gy+  g+e+g+eCyCg+    ++++a+ +++s+Cn++CsG++s +CGg
  KKY17432.1 168 YQGCLLDG-AVNRTFFWQLILTDNNTATNCLTQCAEYGYNAGGMEYGDECYCGDVqnvVDQGATLQPESDCNVACSGNASYICGG 251
                 99*****9.8999***************************************975111567777778888**************8 PP

>> Glyoxal_oxid_N  Glyoxal oxidase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   1.1e-26   3.8e-23      56     240 .]     330     529 ..     317     529 .. 0.88
   2 ?   -2.3   0.0      0.56     2e+03     111     133 ..     617     639 ..     591     647 .. 0.62

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 1.1e-26
  Glyoxal_oxid_N  56 navrplkvltdtwcssgallad..GtlvqtGGfk.dgerkvrllspc......eecdwvelke..elaekRwyatnqiLpdgrvivvGGrrafsy 139
                     +a+r l+v+td +cs++ +l+d  G+ ++ GG++ d++  +r++ p       ++ dw+e+ e  +l++ Rwy +  +L++g+++vvGG +  + 
      KKY17432.1 330 TAFRELHVETDIFCSASIVLPDkvGRQINVGGWSgDATYGIRIYWPDgslgvpGTNDWQENYEelSLQQGRWYPSAMVLANGSILVVGGEEGSNG 424
                     579****************998889*******97367789****997778899899****98867889***********************9999 PP

  Glyoxal_oxid_N 140 efvpkee..kseekavelpfLketedkeennLYPfvhllpdgnlfifankrsilldykknkvvrefpklpgg.....e.rnyPssgssvlLplkl 226
                       vp+ e   +   +ve ++L++t+       YPf+ +lp g +fi   +++ +l  ++ + ++e+p++pg+     + r+yP  g+ +l+p   
      KKY17432.1 425 APVPTLEllPRVGGVVECDYLARTDP---YSTYPFLAVLPSGGVFIGYYNEARVLSSDTFATIKELPNIPGQvndflAgRTYPFEGTMMLMPQY- 515
                     999998854566789*******9985...567**************9999999*****************9533343279***********987. PP

  Glyoxal_oxid_N 227 keeaseaevlvCGG 240
                     +       +l+CGG
      KKY17432.1 516 APYDEPLTILICGG 529
                     5778899******9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.56
  Glyoxal_oxid_N 111 laekRwyatnqiLpdgrvivvGG 133
                      + +R y +++iL  +  i+v G
      KKY17432.1 617 TTIDRLYHSEAILMMDGSILVSG 639
                     44566777777766555555544 PP

>> DUF1929  Domain of unknown function (DUF1929)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.9e-05     0.067       1      43 [.     667     708 ..     667     713 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.9e-05
     DUF1929   1 RPkissvptevkygetftvtvsvekeaeevkvslvrpgfvTHs 43 
                 RP +s  +t+++yget+++t+++ +++++++vsl+++  +TH 
  KKY17432.1 667 RPAFSIDNTDWAYGETVSFTLTA-QTSTDIRVSLIAAMGSTHD 708
                 7776665777********99885.45899*************6 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.2       3.6   1.3e+04       6      19 ..     238     251 ..     236     253 .. 0.78
   2 ?   -0.6   0.1      0.42   1.5e+03      12      36 ..     354     376 ..     343     378 .. 0.83
   3 ?    8.5   0.0   0.00055         2       1      26 [.     400     425 ..     400     429 .. 0.85
   4 ?    3.1   0.0      0.03   1.1e+02      14      43 ..     524     554 ..     523     558 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.6
     Kelch_2   6 sssvpggkiyvvGG 19 
                  ++++g+  y++GG
  KKY17432.1 238 NVACSGNASYICGG 251
                 56778888899998 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.42
     Kelch_2  12 gkiyvvGGahtdnpnlsssdvhvld 36 
                 g+ + vGG+  +++  + +++++ d
  KKY17432.1 354 GRQINVGGW--SGDATYGIRIYWPD 376
                 677889***..99999999999988 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00055
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnpn 26 
                 r+++++++  +g i+vvGG +++n+ 
  KKY17432.1 400 RWYPSAMVLANGSILVVGGEEGSNGA 425
                 699****************9666665 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.03
     Kelch_2  14 iyvvGGa....htdnpnlsssdvhvldlekhvWe 43 
                 i+++GG+     ++ +n++s+     d ++ +W+
  KKY17432.1 524 ILICGGSnpgpAYGVDNCVSIQP---DSDDPTWT 554
                 89*****9999999999999999...99999997 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.3       1.7     6e+03      15      22 ..     247     254 ..     239     260 .. 0.76
   2 ?   -1.4   0.4      0.93   3.3e+03      17      42 ..     359     389 ..     357     390 .. 0.87
   3 ?    8.6   0.0   0.00066       2.4       2      24 ..     401     424 ..     400     433 .. 0.78
   4 ?    0.3   0.0      0.26   9.4e+02      10      23 ..     518     533 ..     513     562 .. 0.75
   5 ?   -2.4   0.0       1.9     7e+03       8      22 ..     568     584 ..     565     600 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.7
     Kelch_6  15 YifGGytd 22 
                 Yi+GG + 
  KKY17432.1 247 YICGGGNR 254
                 99999986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.93
     Kelch_6  17 fGGytdsspylnkvwvyd.....petksWeq 42 
                 +GG++++ +y  ++++ d     p t+ W++
  KKY17432.1 359 VGGWSGDATYGIRIYWPDgslgvPGTNDWQE 389
                 5899888999999999999999999999986 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00066
     Kelch_6   2 raghslvsvggkiYifGGytds.s 24 
                 +++ ++v+++g+i ++GG  +s +
  KKY17432.1 401 WYPSAMVLANGSILVVGGEEGSnG 424
                 456777************998754 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.26
     Kelch_6  10 vgg..kiYifGGytds 23 
                 +++  +i i+GG++ +
  KKY17432.1 518 YDEplTILICGGSNPG 533
                 55555899****9984 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 1.9
     Kelch_6   8 vs.vgg.kiYifGGytd 22 
                 vs ++g ++ + GG ++
  KKY17432.1 568 VSlPDGtYLILNGGENG 584
                 55466668999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:00.57
# Mc/sec: 3757.34
//
Query:       KKY17433.1  [L=906]
Description: hypothetical protein UCRPC4_g05575 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-50  170.7   2.2    1.1e-49  169.1   2.2    1.9  1  Glyco_trans_2_3  Glycosyl transferase family group 2
     0.0074   16.1   0.0       0.02   14.7   0.0    1.7  1  Glycos_transf_2  Glycosyl transferase family 2
  ------ inclusion threshold ------
       0.13   11.8   0.0       0.24   10.9   0.0    1.3  1  DHBP_synthase    3,4-dihydroxy-2-butanone 4-phosphate synthas
        4.4    7.7  11.7       0.19   12.1   4.6    2.2  2  QueT             QueT transporter


Domain annotation for each model (and alignments):
>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.1   2.2   2.4e-53   1.1e-49       1     182 [.     532     761 ..     532     869 .. 0.87

  Alignments for each domain:
  == domain 1  score: 169.1 bits;  conditional E-value: 2.4e-53
  Glyco_trans_2_3   1 iilllDaDtvlppdclreiaaela.spevaivqgpvlvm.nvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalqevg.... 88 
                      i+l++D+Dt++p+dcl + a e++ speva++q+ +++   v+n++e+ +++f++  ++  i +++++g+++p+vG+++flr++alq+++    
       KKY17433.1 532 IVLIIDSDTRVPEDCLVYGALEMHeSPEVALIQHASGILqVVNNVFENGITYFTN-LIYTQIQFAVGSGDCAPFVGHNTFLRWKALQSIAfeqe 624
                      79**********************77***********964789********9997.677889999**********************6666666 PP

  Glyco_trans_2_3  89 ....gwdgdessvsEDfdmglrlqrkGyrvrfvpes..lvkekspltlraalrQrkRwayGc.....el..eklil.................. 151
                          +w+  e++vsEDfd +lrlq++ ++vr+++++  ++ke+++lt++++l++++++ayGc     ++   + i+                  
       KKY17433.1 625 gqvkFWS--EEHVSEDFDVSLRLQMNDFIVRLATYHegGFKEGVSLTVYDELARWEKYAYGCnelvfNPilKWPIRgpftrlflrflfskikvt 716
                      6777***..****************************99***********************85444114533333677777888888888888 PP

  Glyco_trans_2_3 152 .lvrllgylgsl..lwsalplhlallllfslla...........l 182
                       +v  +gy++++  ++sa+pl l+++l+ ++ a            
       KKY17433.1 717 sKVTIIGYIFTYyaIASAVPLVLCNYLIIGWMAssvdqfyltswK 761
                      877788998888335688999999999999988778876553330 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.5e-06      0.02      80     168 ..     530     618 ..     509     620 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.5e-06
                      SSEEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHH CS
  Glycos_transf_2  80 gdyilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrrealee 168
                      g+++l++D+D+ +++d+l   + ++++ ++ + +++   i +  ++   n  +++ + +y++++     g+ + ++g+++ lr +al++
       KKY17433.1 530 GEIVLIIDSDTRVPEDCLVYGALEMHESPEVALIQHASGILQVVNNVFENGITYFTNLIYTQIQFAVGSGDCAPFVGHNTFLRWKALQS 618
                      78**************9999999999977777777777777777777777777******************************999976 PP

>> DHBP_synthase  3,4-dihydroxy-2-butanone 4-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.4e-05      0.24       6      52 ..     526     572 ..     522     576 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.4e-05
                    HHHTT--EEEESSTTTT-BEEEEEEGGG--HHHHHHHHHHB-S--EE CS
  DHBP_synthase   6 alkaGkfvivvDdedrenegdLiiaAekvtpekvafmirhasGlicv 52 
                    +++ G++v+++D++ r  e  L++ A  + ++    +i+hasG+++v
     KKY17433.1 526 EVRIGEIVLIIDSDTRVPEDCLVYGALEMHESPEVALIQHASGILQV 572
                    6889****************************9999********987 PP

>> QueT  QueT transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.6      0.79   3.5e+03      91     121 ..     285     334 ..     272     355 .. 0.46
   2 ?   12.1   4.6   4.2e-05      0.19      69     137 ..     716     781 ..     703     783 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.79
        QueT  91 alppvlvnalivgav.................l..lelpflltvltvglg 121
                 +++ ++v + +v+ +                    +  +f l+++ v++g
  KKY17433.1 285 IILAIVVEMACVAKLvkearldgkylrfamiaTipAFGAFSLFFCVVIMG 334
                 33333333333332233334333332222221012222333333333333 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 4.2e-05
        QueT  69 Gslatliaalltyllkkkrllaalppvlvnalivgavl.lelpflltvltvglgelivlyvlGlpllkal 137
                  s +t+i+ ++ty+     + +a+p vl+n li+g+++    +f lt   +++g ++v  vl  + + +l
  KKY17433.1 716 TSKVTIIGYIFTYYA----IASAVPLVLCNYLIIGWMAsSVDQFYLTSWKIFVGMAVVFNVLSPLAFAML 781
                 566788999999988....7788************9965456899999***********99988777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (906 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.50
# Mc/sec: 5415.19
//
Query:       KKY17434.1  [L=541]
Description: putative phosphatidylserine decarboxylase proenzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-78  260.6   0.0    7.2e-56  188.9   0.0    2.1  2  PS_Dcarbxylase  Phosphatidylserine decarboxylase


Domain annotation for each model (and alignments):
>> PS_Dcarbxylase  Phosphatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   1.2e-23   2.1e-19       1      66 [.     178     243 ..     178     260 .. 0.93
   2 !  188.9   0.0     4e-60   7.2e-56      38     199 ..     271     535 ..     257     536 .. 0.95

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 1.2e-23
  PS_Dcarbxylase   1 lneffvrklkdgaRpidddpgaivsPaDgrilqigeieegsviqvKgityslrdLlgeasessads 66 
                     l++ff+r lk+g+Rp+d++p+ai+sPaDgr+l++g ie+g+v+qvKg+tysl++Llg+a ++++++
      KKY17434.1 178 LAAFFYRTLKPGVRPLDPNPNAILSPADGRVLSFGMIERGEVEQVKGMTYSLDALLGKAAPTTPNP 243
                     689********************************************************9977554 PP

  == domain 2  score: 188.9 bits;  conditional E-value: 4e-60
  PS_Dcarbxylase  38 eegsviqvKgityslrdLlgeasess..........................................adsfkngyfvviyLspgdyHryhaPvs 90 
                     ++++  +v gi+ysl dL+ ++ses+                                            + +++y++v+yL+pgdyHr+h+P+s
      KKY17434.1 271 SDEEFAKVNGISYSLPDLFSGQSESKskakptmdastksqprseaevradfalgpttkpwwdfgfssaTPQKTALYYLVVYLAPGDYHRFHSPIS 365
                     5678899*****************99*****************************************8778889********************* PP

  PS_Dcarbxylase  91 gkveerrhipGellsvnpsalkelrglftlneRvvlview.kGkvavvpvGatnvgsivln.................................. 150
                     + v +rrh++Gel+sv+p+ +++l+glftlneRvvl+++w  G+++++pvGatnvgsi++n                                  
      KKY17434.1 366 WIVSSRRHFAGELYSVSPYLQRTLPGLFTLNERVVLLGRWrWGFFSFIPVGATNVGSIKINfdkelrtnslttdtaadraaaaaaergesyagfs 460
                     ***************************************645***************************************************** PP

  PS_Dcarbxylase 151 .........vlkgdelkkGeelGyFqfGStvvlvfeag.....kfi.............eslvekgqkvkmGeklg 199
                              vl g+ l++Gee+G+Fq+GS++vlvfea+     + +             ++++ekgqkvk+G++lg
      KKY17434.1 461 eatyehaskVLRGHALRRGEEMGGFQLGSSIVLVFEAPrgrrpT-FdegfqgekvkggwKWNIEKGQKVKVGQALG 535
                     *********99*************************99776652.15788899999*****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 3376.43
//
Query:       KKY17435.1  [L=1147]
Description: putative at dna binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.87u 0.35s 00:00:01.22 Elapsed: 00:00:00.58
# Mc/sec: 5952.78
//
Query:       KKY17436.1  [L=254]
Description: putative udp-galactose transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-48  165.9   6.7    1.4e-48  165.7   6.7    1.0  1  Nuc_sug_transp  Nucleotide-sugar transporter
  ------ inclusion threshold ------
        3.5    7.8  11.9        6.6    6.9  11.9    1.5  1  EamA            EamA-like transporter family


Domain annotation for each model (and alignments):
>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.7   6.7   1.6e-52   1.4e-48     171     315 .]      33     180 ..       9     180 .. 0.92

  Alignments for each domain:
  == domain 1  score: 165.7 bits;  conditional E-value: 1.6e-52
  Nuc_sug_transp 171 keensvlGliavlaacllsgfaGvYfekiLkds..nvslWirniqlallsiilal.ltvllkdgskisekGffkGydlvvwvvvllqavGGlvva 262
                        n  +Gliav+  c+ sg+ GvYfek+Lk++  ++slW+rn+qla++s++ al ++v++ dg++++++Gff Gy++vv+v++  qa+GG+v a
      KKY17436.1  33 PRMNAAVGLIAVIGLCIASGLGGVYFEKVLKEApeKTSLWVRNVQLAIYSLFPALfIGVMFLDGETVAKNGFFDGYNWVVFVTIGFQAFGGIVAA 127
                     567999*************************984456***************996268999********************************** PP

  Nuc_sug_transp 263 vvvkyaDnilkgfatslaiilstvasvllldlkitllFllGallviaavflYs 315
                      ++ yaDni k+fats+++++s++as++++d++ t  Fl G++lv++a++lY+
      KKY17436.1 128 FCIFYADNISKNFATSISMVISSLASFFFFDFEATGNFLAGTSLVLFATWLYN 180
                     ****************************************************6 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  11.9   0.00074       6.6       3     135 ..      40     179 ..      38     181 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00074
        EamA   3 gillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegkl.........aklslkdwllllllgl..lgtvlafllffyalkkts 90 
                 g++ ++  ++ +++++v+  ++l++ +  t + vr +  +i  l+ al+ +  +           ++  +w  ++ +g+  +g+++a +++fya + + 
  KKY17436.1  40 GLIAVIGLCIASGLGGVYFEKVLKEAPEKTSLWVRNVQLAIYSLFPALFIGVMFldgetvaknGFFDGYNWVVFVTIGFqaFGGIVAAFCIFYADNIS- 137
                 8999**********************999999999995555444444443333336544455545555558887777778799999999999985554. PP

        EamA  91 asnaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                   +   +ts++ v++ + s++++    t   l+g+ l+l++++l 
  KKY17436.1 138 KNF---ATSISMVISSLASFFFFDFEATGNFLAGTSLVLFATWLY 179
                 444...456788999999********************9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.34s 00:00:00.88 Elapsed: 00:00:00.51
# Mc/sec: 1500.19
//
Query:       KKY17437.1  [L=1295]
Description: putative dead deah box dna helicase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-34  117.4   0.0    1.5e-33  116.1   0.0    1.6  2  Sec63            Sec63 Brl domain
      2e-24   86.3   0.0      1e-23   84.0   0.0    2.0  2  DEAD             DEAD/DEAH box helicase
    1.4e-11   44.7   0.0    2.9e-11   43.7   0.0    1.5  1  ResIII           Type III restriction enzyme, res subunit
    5.3e-09   36.4   0.0    2.5e-08   34.2   0.0    2.2  1  Helicase_C       Helicase conserved C-terminal domain
    0.00056   20.5   0.1     0.0019   18.8   0.1    1.8  1  HHH_5            Helix-hairpin-helix domain
     0.0019   18.5   0.0      0.005   17.1   0.0    1.7  1  AAA_22           AAA domain
     0.0049   17.2   0.1      0.058   13.7   0.0    2.3  2  AAA_19           AAA domain
     0.0092   15.7   0.0       0.02   14.6   0.0    1.6  1  AAA_30           AAA domain
  ------ inclusion threshold ------
      0.044   13.6   0.0       0.11   12.3   0.0    1.7  1  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda


Domain annotation for each model (and alignments):
>> Sec63  Sec63 Brl domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.1   2.2e+03      87     140 ..     110     164 ..     108     417 .. 0.67
   2 !  116.1   0.0   7.4e-37   1.5e-33       2     249 ..     521     830 ..     520     837 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.1
                 HTT---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHH...HHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx RF
       Sec63  87 isrlklegsdlvsDlkyilqnairilralveillskgwlsla...lslleLskmveq 140
                 ++rl+l+  +l+ D++ i  +  ++ +a + i++ ++w s++   +   +L++m++ 
  KKY17437.1 110 FGRLDLKCAELTGDTQHI--QLRNVQSASIIITTPEKWDSVTrkwKDHARLMQMIKL 164
                 677777777788887777..4556667777777777774444111345667777654 PP

  == domain 2  score: 116.1 bits;  conditional E-value: 7.4e-37
                 CHHHHHHHHHT--HHHHHHHHHHS-TT--HHHHHHHHHTSGGGGGS---TTHHHHHHHHHHT..SSS--SSSTTSHHHHHHHHHHHHHTT---SS.... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.... RF
       Sec63   2 telGriaShYyisyetiklfneslkpnttlkdlLeilssasEFeeipvReeEkkelkkLlek..vpikvkediespeaKvniLlqayisrlkleg.... 94 
                 t  G  +++Yy++++t+++f+  l p+ + ++lL  +s++ EF+e+++R  Ek+ +k++++   +++++k di  p  Kv++L+q+ ++ +++++    
  KKY17437.1 521 TVFGDAMARYYVKFDTMRIFMA-LPPKAKISELLFSISQSVEFQELRLRSGEKSLYKEINKDnnIKYPIKVDIALPAHKVSLLIQSELGGMDFPDgeqf 618
                 667999**************77.9************************************55479999999**************************** PP

                 ....HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS-TT............................................ CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................ RF
       Sec63  95 ....sdlvsDlkyilqnairilralveillskgwlslalslleLskmveqrlwds............................................ 145
                     + ++ D  +++qn++r++r++++  l+ ++++++ ++leL++++  r+wd+                                            
  KKY17437.1 619 gkhrHTFTIDKMFVFQNVSRLIRCIIDCQLELRDSTATRHALELARSLGARVWDNsplqlkqldgignaavrklanagirsiealeatethrietamnr 717
                 *****************************************************888******************************************* PP

                 ..............S--EEEEEEECEBTTSEEE.EEEEEEESSS..S-S.CTSSS-CHTSBEEEEEEEEETTTTEEEEEEEEEESSTTTTTEEEEEEEE CS
                 ..............xxxxxxxxxxxxxxxxxxx.xxxxxxxxxx..xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63 146 ..............lPkleieaevqpitrsklr.vevtiereee..esk.pdfpwdkkgksekfwlvvedsendellaikrvtlekkklastqevklef 226
                               +Pkl ++a++  + rs+   v+v+++ e    ++k p f ++k      f+ ++ + ++  l+ ++r+  +  k+++    ++ +
  KKY17437.1 718 hppfgmkllgqlerFPKLRVSAKMMGKERSSPDgVRVHVKAEIGflQDKpPLFFQKK----PVFVCFLAELNDGGLVEFRRMNSN--KIQD--GLDILI 808
                 ************************555555554577777744557655546666666....7888889999999*******5553..3444..455555 PP

                 EEE-.SSCCEEEEEEEEESSSSS CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63 227 tvplsepgpkqltvrlisdswlg 249
                 +v l+++  + + +++++d+  g
  KKY17437.1 809 SVSLTSH-LQWINCYVMCDEIAG 830
                 5655455.689999****98665 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.0   5.2e-27     1e-23       2     171 ..      41     206 ..      40     210 .. 0.87
   2 ?   -1.0   0.0      0.63   1.3e+03      42      89 ..     266     315 ..     254     340 .. 0.72

  Alignments for each domain:
  == domain 1  score: 84.0 bits;  conditional E-value: 5.2e-27
                 HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCS CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplil.gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvd 99 
                 +iQ++++  +  ++++++++a+TGsGKT ++ +++++ + +  ++   k+++ +Pt++L+ + ++++++ +  +dl++   ++g++++ ql+++ +++ 
  KKY17437.1  41 AIQSRTFSVAFgSNDNLVLSAPTGSGKTVIMELAICRLM-HVLKQGDFKIVYQAPTKSLCSERYRDWSQKFGRLDLKCA-ELTGDTQHIQLRNV-QSAS 136
                 799999999995556999******************655.55889999*************************999986.7788999*******.9*** PP

                 EEEEEHHHHHHHH..HCTSSH.CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSH CS
                 xxxxxxxxxxxxx..xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 100 ivvgtpgrlddll..stgkln.lsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpk 171
                 i+++tp+++d+++  ++ + + ++ ++++ +DE++ l d  ++ +++++++++++   d +    +i lSAT+p+
  KKY17437.1 137 IIITTPEKWDSVTrkWKDHARlMQMIKLFLIDEVHILRDT-RGATLEAVVSRMKSVDGDVR----FITLSATVPN 206
                 ***********997633444447777*************9.************76665544....********93 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.63
                 S..TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHH CS
                 x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  42 t..kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaard 89 
                    k++++  ++i + tr+ +eqt+++l +    ++ ++ l+ g ++ r 
  KKY17437.1 266 ViaKHSKRRPIMIFCSTRKSCEQTARHLVETWTSTNPTMRLWKGASNLRM 315
                 2446677778899999*********9998888777766666666555554 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   1.4e-14   2.9e-11      24     169 ..      54     204 ..      37     206 .. 0.80

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 1.4e-14
                 TSEEEEEESTTSTHHHHH.HHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH.. CS
      ResIII  24 dkrglikmaTGtGKTlva.aklierllk.kgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadsee 120
                 + ++++ ++TG+GKT+++ +++++ ++  k++  k++  +p+ksl++  ++++++ +   +  ++ +++gd+++++ ++ ++++i++tt ++ d+    
  KKY17437.1  54 NDNLVLSAPTGSGKTVIMeLAICRLMHVlKQGDFKIVYQAPTKSLCSERYRDWSQKFGRLDL-KCAELTGDTQHIQLRNVQSASIIITTPEKWDSVT-- 149
                 567889************5555555543134444*******************999998765.9***********9******************999.. PP

                 ......HHHTTT-SEEEEETGGGTTS...TTTHHHHHT---....SEEEEEESS- CS
      ResIII 121 eeeeseellrdrfdviiiDEaHrlgak..kswreilekfke....avllglTATp 169
                 ++ +++  l + +++++iDE+H l++   ++ ++++  +k+       + l+AT 
  KKY17437.1 150 RKWKDHARLMQMIKLFLIDEVHILRDTrgATLEAVVSRMKSvdgdVRFITLSATV 204
                 45666777777788*********99975447777755555555557888888886 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   1.3e-11   2.5e-08       5     109 ..     262     402 ..     259     404 .. 0.76

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 1.3e-11
                 HHHHHHHHTTTTSEEEEEESSHHHHHH.HHHH..........................HHHT.TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGG CS
  Helicase_C   5 allellkleeeggkilifvntidrlek.vkll..........................lekk.gikvavlhgelpqnereeileqfnkgesdvLiatdv 75 
                 +l+e + ++++++ i+if+ t++++e+ ++ l                          l++  +  va++h+ l  ++r+++ ++f +g+  ++ +t+ 
  KKY17437.1 262 KLYEVIAKHSKRRPIMIFCSTRKSCEQtARHLvetwtstnptmrlwkgasnlrmadtlLHQTvSSGVAYHHAGLDVDDRLQVEQAFLNGNLSIICCTST 360
                 678888889999***********99777333345555555656656666555555554333379*********************************** PP

                 GTSSSTSTTESEEEESSSSSSH........HHHHHHHTTSSS CS
  Helicase_C  76 aerGidipkvnlVinfdlprnv........tsyiqriGRtgR 109
                 ++ G+++p+  ++i     ++          ++ q+ GR+gR
  KKY17437.1 361 LAIGVNLPCYLVIIKGTSSYTDhgmheypeLEMTQMLGRAGR 402
                 ********7777775555522134455556999********9 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   9.3e-07    0.0019       3      38 ..     677     712 ..     676     716 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 9.3e-07
                 HHHTSTT--HHHHHHHHTTT--SHHHHHHS-HHHHH CS
       HHH_5   3 eLlsvsGiGpktAlallsaGiesvedlaaadveeLa 38 
                 +L +++GiG + +++l++aGi+s+e+l a +++++ 
  KKY17437.1 677 QLKQLDGIGNAAVRKLANAGIRSIEALEATETHRIE 712
                 58899***********************99999886 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.5e-06     0.005       7     118 ..      56     190 ..      52     203 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.5e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst...sskdllrellralglelka.....................erlsseellea 81 
                  lv+ +++G+GKT+ ++    +l  + k+   ++  + +++p ++   ++   +++ +  l+l++ +                      + + + + ++
  KKY17437.1  56 NLVLSAPTGSGKTVIMELAICRLMHVLKQ---GDFKIVYQAPTKSlcsERYRDWSQKFGRLDLKCAEltgdtqhiqlrnvqsasiiitTPEKWDSVTRK 151
                 5899*************999999655554...7777777777777654444446666677777777788888888888999999998777788888888 PP

      AAA_22  82 leqalraravielliiDEaqhlr..seealeeLrsllnl 118
                   +++r  ++i+l++iDE++ lr  + + le ++s+++ 
  KKY17437.1 152 WKDHARLMQMIKLFLIDEVHILRdtRGATLEAVVSRMKS 190
                 88888888889***********88669999999888774 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.9e-05     0.058      10     126 ..      54     185 ..      48     196 .. 0.64
   2 ?    0.4   0.0      0.37   7.4e+02      34      91 ..     266     348 ..     257     374 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.9e-05
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae............atTiH.rlalldfddlltealelle... 92 
                 +++l++ a+ G+GKT +++ ++  l ++ ++   +i+  a+t+  ++e         ++             +T H +l +++  +++           
  KKY17437.1  54 NDNLVLSAPTGSGKTVIMELAICRLMHVLKQGDFKIVYQAPTKSLCSERYRDW---SQKfgrldlkcaeltGDTQHiQLRNVQSASIII------Ttpe 143
                 67899*************998888888877778*********98665543333...222333566676777777775554433333332......1122 PP

      AAA_19  93 .......eaeeekklqeee.llivDEfqdvdelqyrLlkall 126
                        + +++  l +   l+++DE+  + ++  + l+a++
  KKY17437.1 144 kwdsvtrKWKDHARLMQMIkLFLIDEVHILRDTRGATLEAVV 185
                 333555533344444444459999999888877777777776 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.37
      AAA_19  34 lvelggvkpeeillvaftgrAakelrerlaalgae..................atTiHrlal.................ldfddlltealell 91 
                 +++ +  k ++i++ + t++++++ +  l +                      a                         ld+dd+l+ + ++l
  KKY17437.1 266 VIAKH-SKRRPIMIFCSTRKSCEQTARHLVET--WtstnptmrlwkgasnlrmA-------DtllhqtvssgvayhhagLDVDDRLQVEQAFL 348
                 44444.345999*********99988887222..22244444444444444442.......02222223444445555566666666666665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   9.9e-06      0.02       3     121 ..      40     197 ..      38     199 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 9.9e-06
      AAA_30   3 naeQaaavealltsgdrvavltGpAGtGKttalkal....reaweaaggrviglAptgkaAkv.La...........eelgieastiakllkrlk.... 81 
                 na Q++ +  + +s+d   vl +p G+GKt +++ +     +++++  ++++  Apt+    +  +           + ++++++t +  l++ +    
  KKY17437.1  40 NAIQSRTFSVAFGSND-NLVLSAPTGSGKTVIMELAicrlMHVLKQGDFKIVYQAPTKSLCSErYRdwsqkfgrldlKCAELTGDTQHIQLRNVQsasi 137
                 6779999999999998.899*************976532134555556*********998766355444444444331222355555555544446666 PP

      AAA_30  82 ................grarlepg.tllivDEagmv.dtk..qlaallkaaekagakvil 121
                                 ++arl +  +l+++DE+  + dt+  +l+a+++++++ +  v++
  KKY17437.1 138 iittpekwdsvtrkwkDHARLMQMiKLFLIDEVHILrDTRgaTLEAVVSRMKSVDGDVRF 197
                 677777777777788866788888899999999988644322567777777776666665 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.6e-05      0.11       8      31 ..     683     709 ..     677     726 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.6e-05
  DNA_pol_lambd_f   8 GVGpktAkkwyakGirtledlra...k 31 
                      G+G ++ +k+ ++Gir++e l a   +
       KKY17437.1 683 GIGNAAVRKLANAGIRSIEALEAtetH 709
                      9********************996442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.52
# Mc/sec: 7463.44
//
Query:       KKY17438.1  [L=369]
Description: putative transporter protein smf2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-51  174.5   9.6    1.2e-50  172.6   7.4    2.5  2  Nramp       Natural resistance-associated macrophage protein
  ------ inclusion threshold ------
       0.12   13.0   1.3       0.51   11.0   0.0    2.4  2  Renin_r     Renin receptor-like protein
        2.1    8.3   5.6         12    6.0   1.3    2.6  2  Holin_BlyA  holin, BlyA family


Domain annotation for each model (and alignments):
>> Nramp  Natural resistance-associated macrophage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.6   7.4   1.9e-54   1.2e-50     112     352 ..       3     271 ..       1     274 [. 0.92
   2 ?    0.5   0.0     0.039   2.3e+02     182     225 ..     315     358 ..     311     365 .. 0.71

  Alignments for each domain:
  == domain 1  score: 172.6 bits;  conditional E-value: 1.9e-54
       Nramp 112 gyrklEaliialvlvialsFiaelflvk.pdwgevlkglvvPslpg..keslllavgilGatvmphnlflhsslvqerkitidr............... 192
                   r +E +++alvl + ++F ++l  +k  ++gevl+g + Ps      + ++l  gilGatvmph lfl s +vq r ++ d                
  KKY17438.1   3 RLRLFEYFVMALVLGVIICFCIQLSYIKdTSIGEVLRGYL-PSSAVvnGNGIYLSCGILGATVMPHSLFLGSGIVQPRLRQFDIdngnvssdsgtadds 100
                 5799********************87763899******99.998888899**************************99877655789******999988 PP

       Nramp 193 ..........seke....ealkyeriDtiial.ivaflinlailivaAavlysggkdvesledaaeaLepllGskaasvlFaigLlaaGlsStitgtla 276
                           s         l y+  + + +l ++a+++n+ailiva a+ly+ + d  sl++++++L+  l+ +aa ++Fa++Ll +G s+ i++t+a
  KKY17438.1 101 dpsslpkyrpS--IhairACLAYSITELTTSLfTFALFVNSAILIVAGAALYPSTSDSGSLFSIHALLSSTLS-PAAGTIFALALLLSGTSAGIVCTMA 196
                 88777766552..1446667999999******99******************999999***************.7************************ PP

       Nramp 277 gqyvmegflglrislwlrrlitralafvpalivilligaelelvkllvlsqvllslllPfaliplllltsskklMG 352
                 gq+v eg++++  ++w rrl+tr++++vp + +++ +g+++   ++l +sqv+ls++lPf+ +pll++t +++ MG
  KKY17438.1 197 GQIVSEGMIQWTFRPWIRRLVTRLITVVPSVCIAAGVGKDGL-DTALTVSQVILSVILPFVSAPLLYFTCRSQFMG 271
                 ************************************999999.9*******************************9 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.039
       Nramp 182 lvqerkitidrsekeealkyeriDtiialivaflinlailivaA 225
                 ++qer++t++++e+ + l+++   ++   i+a +i l+i+++  
  KKY17438.1 315 TTQERNNTTPDTETPTRLRVNMKNSLPVSILAVMIWLVIVVMNI 358
                 57788866655444477888888888888888888888888754 PP

>> Renin_r  Renin receptor-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.4      0.37   2.2e+03      54      72 ..      11      29 ..       7      32 .. 0.70
   2 ?   11.0   0.0   8.5e-05      0.51      11      74 ..     303     364 ..     293     368 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.37
     Renin_r 54 iFniiLwlvvvlvlaliai 72
                + +++L++++++++ l +i
  KKY17438.1 11 VMALVLGVIICFCIQLSYI 29
                4467777777777777776 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 8.5e-05
     Renin_r  11 ltvkaeekikkrkkrsileakeakdkkekklnlakkyssdYpa.iFniiLwlvvvlvlaliaivv 74 
                 +t++++++ ++   ++++e+++++  +e+++ l ++++++ p+ i ++++wlv+v++   +++ v
  KKY17438.1 303 TTTTSSTQPSN---ETTQERNNTTPDTETPTRLRVNMKNSLPVsILAVMIWLVIVVMNIALLVLV 364
                 44443332222...22223333333333599999999999997699*****99876655555555 PP

>> Holin_BlyA  holin, BlyA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2     0.011        63      22      39 ..       8      25 ..       3      39 .. 0.79
   2 ?    6.0   1.3    0.0019        12      17      36 ..     343     362 ..     325     365 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.011
  Holin_BlyA 22 giFvvllvlgvllllKPl 39
                  Fv+ lvlgv++    +
  KKY17438.1  8 EYFVMALVLGVIICFCIQ 25
                579*********987655 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0019
  Holin_BlyA  17 KLiilgiFvvllvlgvllll 36 
                  +++++i++v++v+ + ll+
  KKY17438.1 343 SILAVMIWLVIVVMNIALLV 362
                 5789**********998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       870  (0.0485247); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2505.82
//
Query:       KKY17439.1  [L=240]
Description: putative magnesium dependent phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-50  170.8   0.0    4.7e-50  169.7   0.0    1.6  1  Acid_PPase  Acid Phosphatase


Domain annotation for each model (and alignments):
>> Acid_PPase  Acid Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.7   0.0   2.6e-54   4.7e-50       6     169 .]       1     223 [.       1     223 [. 0.96

  Alignments for each domain:
  == domain 1  score: 169.7 bits;  conditional E-value: 2.6e-54
                 EEE-STTTSSSS-TTTSS-S-EEE-TTS...................-EEETT--EE---TTHHHHHHHHHHTT--EEEEE--S-HHHHHHHHHHTT-G CS
  Acid_PPase   6 ivFDLDyTLWpfevdtlvsaplkkeskks..................evvDrrgeelklypdveeileelkskevklavaSrtdepdlarelLkllein 86 
                 +vFDLDyTLWpf++dt++++p+k+ +++                   ++vDr+ge++ +y +v++il++ k++++ l vaSrt++pd+ar+lL+ l+i 
  KKY17439.1   1 MVFDLDYTLWPFWCDTHLTPPVKPIKDSVstkkasdlntkgppfvanKMVDRWGEHFGFYSEVPAILSAAKDRGIILGVASRTHTPDIARDLLRGLNIP 99 
                 59*********************999988888999999999999999999************************************************* PP

                 ..................................GGESE..EEESSS-HHHHHHHHHH...............HH---GGGEEEEES-HHHHHHHHTTT CS
  Acid_PPase  87 ........................dakekekklldvfdd..veiykgsktkhfeklkk...............ktgieyedmlfFDdesrnievesrlg 144
                                         +++ + ++++d+f     +i++gskt+hf+++++               +  ++yedmlfFDde+rn++ve++lg
  KKY17439.1 100 iypsstsvaadgttsassktsnkpSSNIQITRAIDLFPPalQQIFPGSKTTHFRAIQQattspktqssipglkNEAVAYEDMLFFDDEARNRNVETELG 198
                 ******************99998878888899*****665699*****************************9999*********************** PP

                 -EEEE-SSS--HHHHHHHHHHHHHH CS
  Acid_PPase 145 vtfvlvpdGltreefekglkewrkk 169
                 vtf+lv+dG++++e++kg++ewrk+
  KKY17439.1 199 VTFWLVRDGVSKDEIDKGVWEWRKR 223
                 **********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1640.31
//
Query:       KKY17440.1  [L=347]
Description: putative 3 exoribonuclease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-12   45.9   0.0    1.6e-11   44.9   0.0    1.6  1  RNase_PH  3' exoribonuclease family, domain 1


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   8.8e-16   1.6e-11       1     132 []      38     192 ..      38     192 .. 0.74

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 8.8e-16
                 EEEEEEEEESSSSTTSEEEEEEECC.EEEEEEEEEEEEEE-TCCG.--CC.EEEECCCCECCCCEC-C..............S...HHHH..HHHHHHH CS
    RNase_PH   1 elRslsietgvlsqanGSaylelGd.tkvlasvtgpieerpseer.ddae.galdveveyapfasger...........rregrpsdeei..elsrlle 83 
                 ++R+l++etgvl++ nGSa + ++d  + l+++++++e+++  ++ ++++ +   v++  ap  ++ +            ++ r +d  +   ls++l 
  KKY17440.1  38 QFRPLTAETGVLPAVNGSAHVGFEDgSEALVGIKAEVEKTKYSFStSSNDsDSGHVNMGDAPNGKNMKgqqdwvslsldISGTRDDDP-TlaFLSEMLR 135
                 69************************************94443322222222234444444444333355566666664333334444.34799****9 PP

                 HHHCCTC-C......CGCCTCEEEEEEEEEECCC..S-CHHHCHHHHHHHHHCTCEE CS
    RNase_PH  84 ralrpsill......ekkpkstididitvlssdg..gslldalinaaslALadagip 132
                 +al +  +l      + + ++++++di +ls+    + +l +l++++++AL+++++p
  KKY17440.1 136 EALVAGNVLpdrlviNSRWHWKLYVDILLLSQFSrsSLPLPLLSLTTHVALLSTRLP 192
                 99999999888888855557***********96655799****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2339.94
//
Query:       KKY17441.1  [L=492]
Description: putative ncs family nucleoside [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-18   66.2  10.1    2.4e-18   66.2  10.1    2.3  2  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami
  ------ inclusion threshold ------
       0.03   14.3   0.0      0.087   12.8   0.0    1.8  1  Caveolin        Caveolin


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2  10.1   2.6e-22   2.4e-18       2     156 ..      92     244 ..      91     253 .. 0.89
   2 !    2.6   0.9     0.005        45     324     379 ..     354     411 ..     278     467 .. 0.74

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 2.6e-22
  Transp_cyt_pur   2 vpeeeRt.wktlnlfsiWlganlnintwvigalglalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvv 95 
                     +pe +R+  + ln+++iW++  +    + +g lg+++gL++  s++  i+++++g +f a+++ +++++Gl++ ++sR+ fGi g+ l +ll ++
      KKY17441.1  92 IPEDKRVpPSRLNMIFIWFSNLMTPGGIPVGILGPEFGLSLSTSLILTIFATILGSAFPAFTATFSSATGLRQIAVSRYAFGIQGAKLCGLLNII 186
                     677666624678********************************************************************************888 PP

  Transp_cyt_pur  96 iaivwfgvqawiGsealllmlgkifgkwleiggailgtsltelvtffifwvvslvivllgv 156
                     + i++  v+ ++ ++ l  + g   +  leig  ++++ l  ++++f+f ++++++ ++++
      KKY17441.1 187 VNIGFGVVNSIVSGQLLRAVSGDTLP--LEIG-IVIIAVLGTVISVFGFRIIHTYERYAWI 244
                     88887777777777766677777776..****.8888889999*************99997 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.005
  Transp_cyt_pur 324 gsliaavialvivpwkllsssskl..ftaflsllavflspvagviiadyfvvrrgylk 379
                     + +++ v+++++ ++ l + +       +flsll++   + ++++  + f  r+  lk
      KKY17441.1 354 RFIWCTVLGVIMLVLGLSGRNVLEtiLSNFLSLLGYWTIAYTVIMFEEHFLFRKLVLK 411
                     5689999999999999999887666788999999999999999999888888876554 PP

>> Caveolin  Caveolin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.7e-06     0.087      70     120 ..     434     484 ..     430     491 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.7e-06
    Caveolin  70 alilgilfallsalhiwlvvPlvklllielkliqkvwsllvdalvdPlfes 120
                 ali+g+ +a++ + + w v P++k +      +   +s++v+ ++ P+f+ 
  KKY17441.1 434 ALIAGFGVAFVGMNQTWYVGPVAKKIGAYGGDVGDYFSFVVSLVMYPVFRW 484
                 89**********************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3559.29
//
Query:       KKY17442.1  [L=318]
Description: putative monooxygenase fad-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-13   49.4   0.3    1.1e-12   48.0   0.3    1.6  1  FAD_binding_3  FAD binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.3   5.9e-17   1.1e-12     126     319 ..      40     250 ..      35     283 .. 0.71

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 5.9e-17
                    EEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEEEEEEEEC-SCCCTTC....CEEEEECCTTEE... CS
  FAD_binding_3 126 tevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvldvlfdadlsdivep....lvlilsaesrgv... 214
                    ++++ +e d+++v+a++ d ++ +      + l+Ga+G++S+vr+ +  + e++ +++   v++v++++ l+   ++     + +++++  ++   
     KKY17442.1  40 KRLTHVESDGQSVQAQFDDGSSAT-----GNLLIGAEGAHSKVREFIVGKEEATLEKV-PLVASVTMAK-LP---ADaatlFTKLHHRNTVSFhpn 125
                    67888999*********9997555.....599*************9875533333332.2333333333.22...333323333333333333677 PP

                    ..........EEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEE......EEEEEEEEEEE..EEEES..SSEETTEEE-G CS
  FAD_binding_3 215 ..........mviPlentlerfyvqvearaekeersekfteeevkarlreivgektldv......eieevsawtva..qrvae..kyrkgrvflaG 290
                              ++  ++ ++  f+++ ++ +++  ++   t e++ ++++e  + ++ +        +++++ w+++  + + +  + r+g v l+G
     KKY17442.1 126 gyftwlgvhdAFEGTKPGDWTFMIIQSWIPKQPYDPSSLTGEDILKDMKERAKHYAEPFnsifqsIPKDTRCWHNQlsHWLPRpwDNRNGTVTLVG 221
                    77899*99997777777777999999999999999999999999999998887766554200100334455565541122333115699******* PP

                    GGTEEE-STTSHHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 291 DAaHihpPtgGqGlNtaiqDavnLawkLa 319
                    DAaH ++   GqGlN ai Da  La kL 
     KKY17442.1 222 DAAHPMTFHRGQGLNNAIHDAASLAQKLK 250
                    ***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2313.72
//
Query:       KKY17443.1  [L=338]
Description: putative umta [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-21   76.5   0.0      3e-21   76.0   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    2.6e-10   40.9   0.0    6.1e-10   39.7   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
    8.9e-10   39.2   0.0    2.9e-09   37.5   0.0    1.9  1  Methyltransf_12  Methyltransferase domain
    4.2e-08   33.1   0.0    8.7e-07   28.8   0.0    2.5  2  Methyltransf_31  Methyltransferase domain
    5.3e-08   33.4   0.0    1.2e-07   32.3   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
     0.0012   18.2   0.0      0.027   13.8   0.0    2.4  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
      0.063   12.8   0.0       0.14   11.7   0.0    1.5  2  MTS              Methyltransferase small domain
       0.12   11.8   0.0       0.22   11.0   0.0    1.4  1  Methyltransf_4   Putative methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0   1.3e-24     3e-21      23     164 ..     104     255 ..      73     256 .. 0.82

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 1.3e-24
  Methyltransf_23  23 ggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatllkpgGy 114
                      ++ +Ld+G+GtGi+    ++++    v g+Dlsp++ ++  ++++a+++  d + ++ +++++dlI++re+l++vpd+ el r++++ lkpgG+
       KKY17443.1 104 PQDILDLGTGTGIWVMDVADQQPqaAVRGIDLSPIQPSW--TPPNARFEIDDYNADWIDADRYDLIHARELLGSVPDWVELYRKAYRALKPGGW 195
                      6799********9866666665434788***********..69999999999999999************************************ PP

  Methyltransf_23 115 lllseplasl.........kedrllldw.lylvpag..rhisffsarslkelleeaGlevve 164
                      +   ep  sl         +ed+ + +w + + +ag    ++f   +++ke+leeaG+ +v+
       KKY17443.1 196 FDQAEP--SLffvsdhiklSEDHPYPQWgKRMKEAGekAGMRFDIGQHIKEWLEEAGFINVQ 255
                      766665..2233555676689999999954556666444559****************9987 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   2.7e-13   6.1e-10       1      97 []     107     194 ..     107     194 .. 0.90

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 2.7e-13
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      +LdlG+GtG +++++a++ ++a v g+D+s+ +   +  +a       +f+  d ++   +++++Dl++++  l  ++  d+ +++++++r+Lk
       KKY17443.1 107 ILDLGTGTGIWVMDVADQQPQAAVRGIDLSPIQPSWTPPNA-------RFEIDDYNADWIDADRYDLIHARELLGSVP--DWVELYRKAYRALK 191
                      8*****************879**********9988765555.......899999988888889*******87788765..9************* PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      pgG
       KKY17443.1 192 PGG 194
                      **9 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   1.3e-12   2.9e-09       1      99 []     108     196 ..     108     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1.3e-12
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+GtG  ++ ++++ p++ + g+D+sp +        +      n+++e+++ +++  d  + +Dl++a ++l  ++d+ e+ ++++++Lk
       KKY17443.1 108 LDLGTGTGIWVMDVADQQPQAAVRGIDLSPIQP-------SWTP--PNARFEIDDYNADWIDA-DRYDLIHARELLGSVPDWVELYRKAYRALK 191
                      8******************************99.......2222..23333333333322222.39**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       KKY17443.1 192 PGGWF 196
                      ***86 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.8     4e+03      96     127 ..      49      82 ..      31      93 .. 0.71
   2 !   28.8   0.0   3.9e-10   8.7e-07       6     152 .]     106     250 ..     103     250 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.8
  Methyltransf_31  96 eiervlkpggilliedprllaelp..akveeesk 127
                      +i r+ +++g+   ++ +++ + p  + ++++++
       KKY17443.1  49 SILRYKEENGRTYHAYGSTEHWGPndERAQDQQD 82 
                      6788888888888888884444444377777766 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 3.9e-10
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee..leklledekfDlilsnevlnaladpdkileei 97 
                       +lDlG+GtG  +   a    p+a v GiD s+  i+ + +        n++Fe+ d ++  +      +++Dli+++e+l  ++d  + ++++
       KKY17443.1 106 DILDLGTGTGIWVMDVA-DQQPQAAVRGIDLSP--IQPSWT------PPNARFEIDDYNAdwI----DADRYDLIHARELLGSVPDWVELYRKA 186
                      59***************.55799*********9..777777......57999*9999988422....2389*********************** PP

  Methyltransf_31  98 ervlkpggilliedpr.........llaelp.akveeeskayevvegak........igt..qkdelyelleeag 152
                       r+lkpgg +  ++p+         l ++ p  ++ +                    +     +++++e+leeag
       KKY17443.1 187 YRALKPGGWFDQAEPSlffvsdhikLSEDHPyPQWGKR----------MkeagekagM-RfdIGQHIKEWLEEAG 250
                      ********999999984433333332222222222222..........1222233321.1347777777777765 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   5.4e-11   1.2e-07       1      94 [.     108     196 ..     108     196 .. 0.83

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 5.4e-11
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgG 92 
                      Ld+G+GtG+ + ++a++   a v g+Dls+ +  +   +a+ e         d     +  + +Dl+ ++e l  v+d+ ++ ++++R LkpgG
       KKY17443.1 108 LDLGTGTGIWVMDVADQQpqAAVRGIDLSPIQPSWTPPNARFEI-------DDYNADWIDADRYDLIHARELLGSVPDWVELYRKAYRALKPGG 194
                      8**************77779************988754444443.......333321244579******************************* PP

                      EE CS
  Methyltransf_11  93 ll 94 
                      ++
       KKY17443.1 195 WF 196
                      86 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.2e-05     0.027      43     180 ..      99     224 ..      83     267 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.2e-05
                      --S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHH.HHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHH CS
  Ubie_methyltran  43 vavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklk.eegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklka 135
                        v +++++lD+ +Gtg + ++++d+ + +  v ++D+++   + +   ++ e   +n +++ a         d +D++     l  v+D  + 
       KKY17443.1  99 APVVNPQDILDLGTGTGIWVMDVADQ-QPQAAVRGIDLSPIQPSWTPPNARfEIDDYNADWIDA---------DRYDLIHARELLGSVPDWVEL 182
                      44678999**************9997.677899*****99887777666552444557777665.........556666666668899****** PP

                      HHHHHHHEEEEEEEEEEEE----SHHHHHHHHHHHH.HHHHHHHH CS
  Ubie_methyltran 136 LkeayrvlkpGGrlvvlefskvelpllsqayelyskevlPvlGkl 180
                       ++ayr lkpGG +   e s   l+ +s   +l   +  P+ Gk 
       KKY17443.1 183 YRKAYRALKPGGWFDQAEPS---LFFVSDHIKLSEDHPYPQWGKR 224
                      ************98766644...3333333344444444444444 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.3e-05      0.14      33      64 ..     105     136 ..      93     142 .. 0.89
   2 ?   -3.5   0.0         3   6.7e+03     120     133 ..     181     194 ..     179     196 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.3e-05
                 SEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  33 gkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +++lDlG+G+G+  + +a+++p+a+v  +d +
  KKY17443.1 105 QDILDLGTGTGIWVMDVADQQPQAAVRGIDLS 136
                 67************************999875 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3
                 HHHHHHHHHEEEEE CS
         MTS 120 eliaeAkeaLkegG 133
                 el ++A +aLk+gG
  KKY17443.1 181 ELYRKAYRALKPGG 194
                 68899*******99 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   9.7e-05      0.22       5      33 ..     107     135 ..     103     139 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.7e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     +l++G+G G ++++ A ++P+  + Gi++
      KKY17443.1 107 ILDLGTGTGIWVMDVADQQPQAAVRGIDL 135
                     79*********************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2266.91
//
Query:       KKY17444.1  [L=972]
Description: hypothetical protein UCRPC4_g05586 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (972 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       943  (0.0525964); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 6425.16
//
Query:       KKY17445.1  [L=351]
Description: putative fructose-bisphosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-68  229.7   0.0    2.5e-68  229.3   0.0    1.1  1  FBPase    Fructose-1-6-bisphosphatase, N-terminal domain


Domain annotation for each model (and alignments):
>> FBPase  Fructose-1-6-bisphosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.3   0.0   1.4e-72   2.5e-68       2     189 .]      24     215 ..      23     215 .. 0.97

  Alignments for each domain:
  == domain 1  score: 229.3 bits;  conditional E-value: 1.4e-72
      FBPase   2 tltrfiveeqkeeanatgeltallsalklalkiisskvrkaelvnllGlagaeNvtGdeqkklDvladeiliealkaseevkvlvSEEeeelivlerek 100
                 tltrf+ eeq+++++atg++t l  al++++k i+  +r+a l+nl+Glag++N+tGd+qkklDv++++++i+a++ s+++ +lvSEEee++i+++++ 
  KKY17445.1  24 TLTRFLTEEQAKHKEATGDFTLLCHALQFSFKSIAYYIRRATLINLTGLAGSSNTTGDDQKKLDVIGNDLFIAAMRGSGKCRMLVSEEEEHAIFFDESP 122
                 9************************************************************************************************** PP

      FBPase 101 egkyvvafDPlDGSSnidtnvsvGtifsiyrkks...edeettidvlqpGkeqvAAgyvvYGsstmlVltlgaG.vngFtlDpslgefiltke 189
                 +++y+v++DP+DGSSn+d++vsvGtif++++ +     ++++ +d+l pG e++A g+++YG+s++lV+tl+ G vngFtlD++lgefilt++
  KKY17445.1 123 NARYAVVCDPIDGSSNLDAGVSVGTIFGVFKLPEsviGKKPSAEDILLPGTELLASGFTMYGASAQLVITLKGGtVNGFTLDNALGEFILTHP 215
                 *******************************8777778899999***************************99758***************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2435.41
//
Query:       KKY17446.1  [L=322]
Description: putative mfs sugar [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-20   73.9   3.6    1.5e-20   73.5   3.6    1.1  1  Sugar_tr  Sugar (and other) transporter
    2.6e-05   23.3   5.6    3.5e-05   22.9   5.6    1.1  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   3.6   1.7e-24   1.5e-20       3     152 ..     176     322 .]     174     322 .] 0.93

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 1.7e-24
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHH.HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTS CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvG.aiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkn 100
                  + +l+  ++g d  v +++++l+ +  n ++++  s+++ ++  +gl+v++ ++  a++G+ ++ +l  +f R+ ++ i+++++ +++v  ++a+   
  KKY17446.1 176 SMCSLAAAVQGMDETVNNGAQALYLKELNITVERFGSTEK-TNNITGLVVGAPYLAsAVLGCWLTEPLNAIFARRGTIFITCLVAAVASVWEGVAD--- 270
                 577889999***********************99999777.5889999999876651567************************************... PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHH CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGil 152
                 s+  l+++R+++G+g+G  s +vP++++E Ap+ +Rgalv+ +q +++fGi+
  KKY17446.1 271 SWVNLFLARFVLGLGIGSKSSTVPIFTAECAPAPIRGALVMQWQIWTAFGII 322
                 **************************************************96 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   5.6   3.9e-09   3.5e-05       2     134 ..     179     321 ..     178     322 .] 0.76

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 3.9e-09
       MFS_1   2 llaaflsalarsilgpalplalaedlgispse..........igllltlyalgaavaslpl.GrlsdrfGrrrvlllglllfalglllllfasslw.ll 88 
                 +laa++ +++ ++ + a   ++ ++l+i++             gl++++ +l++av+   l  +l   f rr +++++ l+ a+++++  + + +w  l
  KKY17446.1 179 SLAAAVQGMDETVNNGAQA-LYLKELNITVERfgstektnniTGLVVGAPYLASAVLGCWLtEPLNAIFARRGTIFITCLVAAVASVWEGV-ADSWvNL 275
                 5788999999999999999.555788866666333334455566688888888888887777888889*7777555555555555344444.889988* PP

       MFS_1  89 lvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGa 134
                 +++r++ Glg g+  +++ +++a+ +p + rg  +  +++ +++G+
  KKY17446.1 276 FLARFVLGLGIGSKSSTVPIFTAECAPAPIRGALVMQWQIWTAFGI 321
                 ********************************99988888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2174.35
//
Query:       KKY17447.1  [L=417]
Description: putative arginine-trna-protein transferase 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-48  162.7   1.8    1.2e-47  161.9   1.8    1.4  1  ATE_C     Arginine-tRNA-protein transferase, C terminus
    1.8e-05   25.0   4.4    3.2e-05   24.2   2.1    2.5  2  ATE_N     Arginine-tRNA-protein transferase, N terminus


Domain annotation for each model (and alignments):
>> ATE_C  Arginine-tRNA-protein transferase, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.9   1.8   1.4e-51   1.2e-47       2     133 ..     153     285 ..     152     286 .. 0.95

  Alignments for each domain:
  == domain 1  score: 161.9 bits;  conditional E-value: 1.4e-51
       ATE_C   2 kfeLykkYqkavhgdkeeksseesfarflvdsplseeei.sakekklgsyhqeyrldgkLvavgvvDvlpeglSsvYffydpdyaklslGklsiLreie 99 
                 k +L+++Yq+a+h+++++k ++++f+rfl++   +++e+    +k+lgsyh++yrldg+L+a+gv+D+lp+++SsvY++ydp+++++ +Gkls+Lrei+
  KKY17447.1 153 KWSLFQNYQMAIHKEPKSKNTKRTFERFLCSGLRRSTETdGGVSKRLGSYHMCYRLDGELIAIGVLDLLPHAVSSVYLIYDPKFDAFRFGKLSALREIA 251
                 578*****************************8666555367899****************************************************** PP

       ATE_C 100 larelglkyyylGYyiescpkmrYKaeykpsell 133
                 ++ e+++kyyy+GYyi+sc kmrYKa+y+p+++l
  KKY17447.1 252 FTLEQSYKYYYMGYYIHSCVKMRYKADYRPQQIL 285
                 ********************************98 PP

>> ATE_N  Arginine-tRNA-protein transferase, N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   2.1   3.5e-09   3.2e-05       2      49 ..      23      61 ..      22      71 .. 0.82
   2 ?   -2.7   0.0       0.9     8e+03      32      48 ..     173     189 ..     155     191 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 3.5e-09
       ATE_N  2 sCgYckgkkerkavssekesatvgvsaesltvedyqelldrGfRRsGk 49
                +CgYck k+++          +++++++++t+ +yqel+drG+RR   
  KKY17447.1 23 NCGYCKRKHTSP---------SYYATSTRVTPGHYQELMDRGWRRLLA 61
                7*******9977.........567778899***************755 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.9
       ATE_N  32 tvedyqelldrGfRRsG 48 
                 t ++ +++l  G RRs 
  KKY17447.1 173 TKRTFERFLCSGLRRST 189
                 55667788888899985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2716.17
//
Query:       KKY17448.1  [L=153]
Description: putative nudix family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-15   57.3   0.6      2e-15   57.0   0.6    1.1  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.6   1.1e-19     2e-15       3     123 ..      18     137 ..      16     145 .. 0.77

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 1.1e-19
                 EEEEEEEEEETTSE.EEEEEESSSSTTTEESSEEECBTTS.HHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE.EEECSGCSS CS
       NUDIX   3 rravgvvllnekge.vLlvrrskkpfpgWelPgGkvepgE.tpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfl.eevegelep 98 
                 r  +gvv l ++++ vLl++++  +  gW lP+G+ e +E t++eAA RE++EE+G+++   + +g + +++++++  +      y f+ + v++e   
  KKY17448.1  18 RLVAGVVPLSKDKKcVLLIQSA--RRGGWVLPKGGWELDEaTAAEAACREAWEEAGVICTVEREIGFIIDKRSPTQLSKHAPKAAYQFFeAIVTEEKSA 114
                 67899**777777879999988..7777****************************9997778888888888888888886666666664666666666 PP

                 TSTTTEEEEEEEEHHHHHHHHTHCT CS
       NUDIX  99 ndenevsevrwvpleellkeklaae 123
                   e   ++ +w+ ++e+  +++ a+
  KKY17448.1 115 WPEMKKRGRKWMAYKEA--ADALAP 137
                 6566667779*******..333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.51
# Mc/sec: 899.97
//
Query:       KKY17449.1  [L=395]
Description: hypothetical protein UCRPC4_g05591 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00088   19.1   0.0     0.0018   18.1   0.0    1.5  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   9.9e-08    0.0018       6      70 .]     136     203 ..     134     203 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 9.9e-08
                 ETTTSSHHHHHHHHHT..TSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   6 LppdvteeeLkelFsk..fGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 ++p +t  ++++      fG  ++   ++   t++++ +a V F++++ Ae+ +e+lng+k +gr+l+
  KKY17449.1 136 FAPGTTAADIEAAIYSmpFGASEENLQSCRiITNSPTVIAEVVFTDRSIAEQLIESLNGQKADGRVLH 203
                 5555555555555444345555333333333567*******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2818.81
//
Query:       KKY17450.1  [L=597]
Description: hypothetical protein UCRPC4_g05592 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        6.1    7.0  14.3         10    6.3   0.3    4.1  5  MAGI_u5   Unstructured region on MAGI


Domain annotation for each model (and alignments):
>> MAGI_u5  Unstructured region on MAGI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.26   4.7e+03      88      99 ..      15      26 ..       9      49 .. 0.54
   2 ?    1.5   3.6     0.017   3.1e+02       7      42 ..      53      89 ..      48     137 .. 0.72
   3 ?    6.3   0.3   0.00058        10      27      75 ..     137     186 ..     132     190 .. 0.81
   4 ?   -2.7   0.0      0.34   6.2e+03      13      56 ..     292     335 ..     286     351 .. 0.71
   5 ?    4.2   0.0    0.0025        45      45      90 ..     467     515 ..     452     528 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.26
     MAGI_u5 88 rsmyesrllvlk 99
                rs+ esr+++ +
  KKY17450.1 15 RSLSESRQKSKS 26
                888888873332 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.017
     MAGI_u5  7 kksPklkqLerkDsqnssqhsvsshrslhtd..sPshs 42
                + sP++ qL+rk  +  s+hsv   + +  d  sP+  
  KKY17450.1 53 QSSPQS-QLSRKSVRFRSRHSVLETQKVAIDhsSPVDI 89
                567776.9*************97655443331155443 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.00058
     MAGI_u5  27 svsshrslhtdsPshsslalplsesvappppsqplps.lpiqdpadgtiq 75 
                 s ss      dsP+ s  + +++ + ++p p   lp   p +d +++t  
  KKY17450.1 137 SLSSVEHFLSDSPAKSLFSNTTNSALPTPMPGTNLPLeDPFEDAGQNTEA 186
                 7888899999*********9999999999999999851466677777755 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 0.34
     MAGI_u5  13 kqLerkDsqnssqhsvsshrslhtdsPshsslalplsesvappp 56 
                 ++L+ + s ++  + vs ++ + t++     la   +esv+ p 
  KKY17450.1 292 RDLSCRGSTQTVAEDVSHNHEADTETSLGIDLANGGKESVTKPG 335
                 56666777777777888888888888888888888888888776 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.0025
     MAGI_u5  45 alplsesvappppsqplpslpiqdpadg...tiqkkPDPfkiWaqsrsm 90 
                 ++ l+ +      sqp p++   ++a       ++kP   ++W+ srs 
  KKY17450.1 467 SVELESGFVGNEHSQPSPPIGYAEKATQiplHPKHKPGSVRVWSGSRST 515
                 55555555556688999988888877776656789************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 3806.78
//
Query:       KKY17451.1  [L=408]
Description: hypothetical protein UCRPC4_g05593 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2148  (0.119806); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 2587.87
//
Query:       KKY17452.1  [L=357]
Description: hypothetical protein UCRPC4_g05594 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1223  (0.0682135); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 2216.20
//
Query:       KKY17453.1  [L=357]
Description: putative rna polymerase ii subunit 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-31  109.2   0.0    2.1e-31  108.6   0.0    1.2  1  RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
      7e-18   63.8   0.0    1.1e-17   63.2   0.0    1.3  1  RNA_pol_L      RNA polymerase Rpb3/Rpb11 dimerisation domain


Domain annotation for each model (and alignments):
>> RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6   0.0   2.3e-35   2.1e-31       1     111 [.      60     184 ..      60     185 .. 0.98

  Alignments for each domain:
  == domain 1  score: 108.6 bits;  conditional E-value: 2.3e-35
                    EEEEECTSSS.HHHHHCHHHCSTCBSSCHHHHHHHHCTT-ETSSSSTTCSEEEEEEEEESSEC......EEGGGCBESSSSCEES..........S CS
  RNA_pol_A_bac   1 VeieentsvlqDEvvaHrlgliplvsedvleillnlkelveeeeegeeeksvelkLnvkgpge......vtagdlkledadveiv..........n 80 
                    V+i +n+svl DE++aHrlglipl+s d ++ +l+++++  ++e +++++svel+L++k+++       v+a+dl +  ++ ++           +
     KKY17453.1  60 VNIHTNNSVLPDEYIAHRLGLIPLNSRDCHKDMLFSRDC--DCEGNCDRCSVELELHAKCSTSatetmqVYARDLIVIGNRPNPWvgspvfkegdD 153
                    89*************************************..9************************************99999999999******* PP

                    TTSEEEEEETT-EEEEEEEEEEESSEECTTT CS
  RNA_pol_A_bac  81 pdilIakLrkgqeleleakvkkGiGkehakf 111
                    ++ lIakLr gqe++l++++kkGi+kehak+
     KKY17453.1 154 KGPLIAKLRRGQEINLQCIAKKGIAKEHAKW 184
                    ******************************9 PP

>> RNA_pol_L  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.0   1.2e-21   1.1e-17       2      69 .]      31     284 ..      30     284 .. 0.82

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 1.2e-21
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................................................... RF
   RNA_pol_L   2 fllrgvdhtlgNaLRrillsevpgvaiea...................................................................... 30 
                 f+l+ vd++l+N+LRr++l+e+p+v i+                                                                       
  KKY17453.1  31 FVLSSVDLALANSLRRVMLAEIPTVSIDLvnihtnnsvlpdeyiahrlgliplnsrdchkdmlfsrdcdcegncdrcsvelelhakcstsatetmqvya 129
                 899**************************************************************************9999999999999999999999 PP

                 ......................................................................................xx........... RF
   RNA_pol_L  31 ......................................................................................pv........... 32 
                                                                                                       p+           
  KKY17453.1 130 rdlivignrpnpwvgspvfkegddkgpliaklrrgqeinlqciakkgiakehakwapsaaigfeydplnklrhtsywyeedpknewPInernaawetee 228
                 999999999999999988888888887777777777777777777777777777777777777777666666666666666555551155555555555 PP

                 ...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   RNA_pol_L  33 ...................vkvntdkdklilevetdgslkPeealkeAlkiLkekl 69 
                                    ++  ++++ +++++e++g l+P++++++++++L+ekl
  KKY17453.1 229 gvnggmnadlpvgaggeagFDPDAKPQTFFFDIESVGILEPDQIVQQGITVLQEKL 284
                 55555555555466666666666*******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.36s 00:00:00.98 Elapsed: 00:00:00.58
# Mc/sec: 1861.29
//
Query:       KKY17454.1  [L=216]
Description: putative mitochondrial co-chaperone [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-44  151.8   2.7    1.5e-44  151.6   2.7    1.0  1  GrpE      GrpE
  ------ inclusion threshold ------
      0.019   14.7   2.4      0.028   14.2   2.1    1.4  1  DUF4201   Domain of unknown function (DUF4201)
      0.056   13.7   1.4      0.081   13.2   1.4    1.2  1  Med21     Subunit 21 of Mediator complex


Domain annotation for each model (and alignments):
>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.6   2.7   2.5e-48   1.5e-44       4     166 .]      41     212 ..      31     212 .. 0.94

  Alignments for each domain:
  == domain 1  score: 151.6 bits;  conditional E-value: 2.5e-48
                 ...CTTTHHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC.........HHH-HHHHHHHH CS
        GrpE   4 eeeeeeeedeeeeleeeleelekevkelkekllrllaefenlrkrtekekeeakkfaiekfakdLLpvlDnleralksak.......eneeekslleGv 95 
                 e ++e+ ++e + l++e+e+ +ke+ +lk+++lr+ a+f nl++rt+++ ++a++fai+kfa+dL++ +Dnl+ral +++       +n+e++ l+ G+
  KKY17454.1  41 ETSSEAPKEEANPLQKEVEAKNKEIIDLKDRYLRSVADFRNLQERTKRDVDNARNFAIQKFATDLIESIDNLDRALGAVPtdalqseANKELQTLHSGL 139
                 5667888999999*****************************************************************999988665556666****** PP

                 HHHHHHHHHHHHHTT-EE---T..TSB--TTTEEEEEEECSSC...TBEEEEEE--EEETTEEEE-EEEEEEE CS
        GrpE  96 emtlkqllkiLekhgvekiepk..gepFDpnlheavstveddekeegtvvevvqkGYklkdrvlRpAmVkVsk 166
                 +mt+  l+++L+khg+e+++p   g +FDp++ eav++ +++eke+g +++  +kG+ l++rvlR+A+V+V++
  KKY17454.1 140 KMTETILMNTLKKHGLERFDPIeqGRKFDPKVDEAVFMSPHPEKENGDIMHTQSKGFLLNGRVLRAAKVGVVQ 212
                 *********************889***********************************************85 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   2.1   4.7e-06     0.028      46      88 ..      46      90 ..      30     143 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.7e-06
     DUF4201 46 qlqienqalnkkIeernkeLkrlkkkttktvhalthlkeklh..m 88
                  + e + l+k++e +nke+  lk+++ ++v    +l+e+++   
  KKY17454.1 46 APKEEANPLQKEVEAKNKEIIDLKDRYLRSVADFRNLQERTKrdV 90
                56889999***************************9999877443 PP

>> Med21  Subunit 21 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.4   1.4e-05     0.081      25     126 ..      25     151 ..      23     157 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.4e-05
       Med21  25 ylntshdpsplseqdpsspsaapalakip..........................qeekeepepdspeefaatqrelardlilkeqqIeyLIssLPgig 97 
                 +++t+++ ++l e+ ++++s+ap+++++p                           + +e ++ d +++ + +++++a+dli    +++    + P+  
  KKY17454.1  25 WVSTDAEEKTLGENGKETSSEAPKEEANPlqkeveaknkeiidlkdrylrsvadfRNLQERTKRDVDNARNFAIQKFATDLIESIDNLDRALGAVPTD- 122
                 7999*******************9999999************************9666677777777777788***************9999999985. PP

       Med21  98 sseeeqeerikeLeeelreveeereekvk 126
                   + e  ++++ L++ l+  e+ + +++k
  KKY17454.1 123 ALQSEANKELQTLHSGLKMTETILMNTLK 151
                 55666778899999999888877766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.55
# Mc/sec: 1176.03
//
Query:       KKY17455.1  [L=660]
Description: hypothetical protein UCRPC4_g05597 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-31  107.9   3.1      4e-31  107.9   3.1    1.8  2  Uds1      Up-regulated During Septation


Domain annotation for each model (and alignments):
>> Uds1  Up-regulated During Septation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3      0.31   5.6e+03      56      70 ..     395     411 ..     388     438 .. 0.44
   2 !  107.9   3.1   2.2e-35     4e-31       3     129 ..     475     592 ..     473     593 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.31
        Uds1  56 sLsrlyssskksak.....s 70 
                 +L+r     ++s++     s
  KKY17455.1 395 NLQRTR---SNSSSttqnfS 411
                 233333...22211111111 PP

  == domain 2  score: 107.9 bits;  conditional E-value: 2.2e-35
        Uds1   3 lLvetAlvdsqefeiLsleeVeelkkelkaLeerlealrkkLaletklrdaarsLsrlyssskksakssaarsnskssreslakaeeelaeserkvdel 101
                  L e+A++++ +f  L  +eV++l++el++L+er+e+lrk+   +++lrd++r+L++++++++ks       + +k+s +s++k+e +l e++++vde+
  KKY17455.1 475 ALREQAVGQAGKFALLPRKEVKQLSRELRSLDERCEYLRKT---HNSLRDGRRELHARMITYLKS------PRLAKFSVDSMLKQEVALGELDKSVDEW 564
                 79***************************************...*********************......699999********************** PP

        Uds1 102 aselekleeraaevrrrLLeHtAavLql 129
                   +le +e+r+a+vr++LLeH+Aa+L l
  KKY17455.1 565 IVKLEYAENRRARVRQKLLEHVAAALTL 592
                 *************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.54
# Mc/sec: 3702.93
//
Query:       KKY17456.1  [L=210]
Description: putative glutathione s-transferase iii [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-08   34.7   0.0      3e-08   33.9   0.0    1.4  1  GST_N          Glutathione S-transferase, N-terminal domain
    2.4e-07   31.1   0.0    4.4e-07   30.2   0.0    1.4  1  GST_N_3        Glutathione S-transferase, N-terminal domain
      5e-07   29.9   0.0    7.6e-07   29.3   0.0    1.4  1  GST_C          Glutathione S-transferase, C-terminal domain
    1.3e-05   25.1   0.0      3e-05   24.0   0.0    1.6  2  GST_C_2        Glutathione S-transferase, C-terminal domain
    9.8e-05   22.6   0.0     0.0002   21.6   0.0    1.5  1  GST_N_2        Glutathione S-transferase, N-terminal domain
    0.00093   19.4   0.0     0.0017   18.5   0.0    1.5  1  GST_C_3        Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.046   12.4   0.0      0.059   12.0   0.0    1.1  1  Peptidase_S37  PS-10 peptidase S37


Domain annotation for each model (and alignments):
>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   1.2e-11     3e-08       8      73 ..      11      78 ..       5      79 .. 0.91

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 1.2e-11
                SSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTT..S-SSEEEETTEEEESHHHHHHH CS
       GST_N  8 irgsprahrirlllaakgveyevvpldfeageekspellklnpl..gkvPaLedngkkltESraIleY 73
                ++g +ra ri +ll++++++y+ v   ++    ++p+++ + p    k+P+  d++ ++ ES aI+eY
  KKY17456.1 11 FLGASRAIRIAWLLEELKLPYNLVSSPRGPDNLAPPKFKEKVPAplSKSPTIKDGDIVIQESAAIAEY 78
                44558*********************998888888*******9999*********************9 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.7e-10   4.4e-07      10      66 ..      17      78 ..      10      79 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1.7e-10
                HHHHHHHHHHHT--EEEE---TTTT...HHHHHHH-..TT--SSEEETTS-EEESHHHHHHH CS
     GST_N_3 10 arrvrlaLnekglpvevvevtpgeh...deellakn..plgkvPvLeddgealtdSlaIidy 66
                a r++++L+e++lp+++v+ + g     ++ +++k   pl k P+++d++ ++++S+aI++y
  KKY17456.1 17 AIRIAWLLEELKLPYNLVSSPRGPDnlaPPKFKEKVpaPLSKSPTIKDGDIVIQESAAIAEY 78
                679***************9995553357*******9999*********************99 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   2.9e-10   7.6e-07       8      90 ..     112     204 ..      91     207 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 2.9e-10
                 HHHHHHSTTH.....HHHHHHHHHHHHHHHHHHHHHHHHHH..TSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTT...TTTSHHHHHHHHHHH CS
       GST_C   8 illlfyvkae.....ekkeelvdealekvaevlsaleeelk..kqdylvGdkltlADialvpilnwlqrlglafg...qekfpnlkawlerim 90 
                 il++++ ++e     ++  +l +++++ v++ l+  e+el+  + +ylvG  lt ADi++v+ l++ + ++l++g   + k++   +wl r+ 
  KKY17456.1 112 ILYARLHMPEsgeqnGTLTKLEEALSKNVHNDLNWMETELErnGTVYLVGVCLTAADIVVVFSLQFIFARRLGVGdkdERKWKIFRDWLRRME 204
                 5555555555565555556677889999*************9999********************999999999999*************996 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         3   7.6e+03      48      60 ..      98     110 ..      89     119 .. 0.61
   2 !   24.0   0.0   1.2e-08     3e-05       9      69 .]     138     202 ..     120     202 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3
                 HHHHHS----TT- CS
     GST_C_2  48 raagpgfdireay 60 
                 +aa +g+ +++a+
  KKY17456.1  98 MAAAEGTFLMHAL 110
                 3444455555555 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 1.2e-08
                 HHCCHCHHHCTTT---SS...CTTCS--HHHHHHHHHHHHHHHH..HHS----TT-HHHHHHHHH CS
     GST_C_2   9 eqldaaldaleahLadsp..flfGdqptlaDialapflvrlraa..gpgfdireaypnlraWler 69 
                 ++++++l ++e++L+     +l G  +t+aDi++   l++  a+  g g   + +++ +r+Wl+r
  KKY17456.1 138 KNVHNDLNWMETELERNGtvYLVGVCLTAADIVVVFSLQFIFARrlGVGDKDERKWKIFRDWLRR 202
                 689************99999***************99998888733555466679********98 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   7.9e-08    0.0002       5      66 ..      17      78 ..      15      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 7.9e-08
                HHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHC..TTTSSSEEE-CTTEEEESHHHHHHH CS
     GST_N_2  5 ahRvlialalkglediisvvvlepkgfekseefprln..prgtVPvLwdkdgqvineSseIlry 66
                a R+ ++l++++l++ +  ++ +p+   + + f++    p+ + P++ d +  vi eS++I++y
  KKY17456.1 17 AIRIAWLLEELKLPYNLVSSPRGPDNLAP-PKFKEKVpaPLSKSPTIKD-GDIVIQESAAIAEY 78
                5699*************999999888875.799998844578******8.556*********99 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   6.8e-07    0.0017      18      66 ..     125     177 ..     106     205 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 6.8e-07
                 H....HHHHHHHHHHHHCHHHHHHHHHHCHGTS.SSSTTS--HHHHHHHHHHHH CS
     GST_C_3  18 a....ekkkefleerlpkflkyfekvlkkkggg.ylvgdklTyADlalfqvldg 66 
                 +     k +e l + + + l+++e+ l+  +g+ ylvg  lT AD++++  l+ 
  KKY17456.1 125 QngtlTKLEEALSKNVHNDLNWMETELER-NGTvYLVGVCLTAADIVVVFSLQF 177
                 2466788999999***************5.5555************99877665 PP

>> Peptidase_S37  PS-10 peptidase S37
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.3e-05     0.059      75     148 ..      57     130 ..      51     147 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.3e-05
  Peptidase_S37  75 stnpsrreptqivdgnqvsmeyryftpsrpapadwskldiwqaasdqhrifkalkplysknwistggskggmta 148
                    s  p+ ++   +++      ey+ f ps  +p+  +k+  + aa++   +++al  ly++  +   g + g  +
     KKY17456.1  57 SKSPTIKDGDIVIQESAAIAEYHKFMPSPSSPSPRAKVREYMAAAEGTFLMHALAILYARLHMPESGEQNGTLT 130
                    55666677777777778889****************************************99998888777443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.52
# Mc/sec: 1212.30
//
Query:       KKY17457.1  [L=241]
Description: putative calcineurin binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-26   91.0   1.7    3.1e-25   89.0   1.7    1.9  1  Calcipressin  Calcipressin


Domain annotation for each model (and alignments):
>> Calcipressin  Calcipressin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   1.7   1.8e-29   3.1e-25      63     186 .]      25     237 ..       3     237 .. 0.75

  Alignments for each domain:
  == domain 1  score: 89.0 bits;  conditional E-value: 1.8e-29
  Calcipressin  63 k..........................lrlYfaqpttidrdaakkhLalPeaeklFlISPPaSPPegweqkaedaPnrtvlaeDlqealakLel... 130
                   +                           r+Yf++pt+i  d+ k++L  P+a+klF+ISPP+SPP+gwe++ e  Pn++ +a Dlq al+kL+    
    KKY17457.1  25 NspvsptgdeaqehanlplsaedhevrARIYFGEPTPI--DNSKHYLDKPDAGKLFFISPPPSPPVGWESTREGPPNTQTHATDLQSALEKLGSkir 119
                   4445555555555555555555555559**********..7789***************************************************** PP

  Calcipressin 131 ..............................................................eekaqlsagk.dktpsvdltlvkvev....gesea 160
                                                                                 +      ++  ++++   l+ v ve+    ge+e 
    KKY17457.1 120 dsgsnfgkagqeedskpelevqvndaavsgstvtapteprsatsatsrsgtrtrsssttmiyD------PEAhATGKRKGLPSVMVEDttysGEEES 210
                   ****************************************************99876555422......3333455555555555554000044444 PP

  Calcipressin 161 deeead.evsdtprtkpkivkTarPpv 186
                   ++++++  + +    k +i++T rPpv
    KKY17457.1 211 EAKDNEgAGPQLDDGKRIIAHTTRPPV 237
                   44443333444556788999*****95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.53
# Mc/sec: 1371.11
//
Query:       KKY17458.1  [L=564]
Description: putative phenylalanyl-trna synthetase alpha subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-45  154.0   0.3    4.9e-26   91.7   0.0    2.2  2  tRNA-synt_2d  tRNA synthetases class II core domain (F)
    2.3e-23   82.4   0.0    3.1e-22   78.8   0.0    2.5  1  FDX-ACB       Ferredoxin-fold anticodon binding domain
  ------ inclusion threshold ------
       0.12   12.6   0.1       0.31   11.2   0.1    1.7  1  KapB          Kinase associated protein B
        0.2   11.3   0.0       0.32   10.6   0.0    1.2  1  DUF2229       CoA enzyme activase uncharacterised domain (DUF


Domain annotation for each model (and alignments):
>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.1   4.4e-20     2e-16      10     129 ..     122     243 ..     116     248 .. 0.83
   2 !   91.7   0.0   1.1e-29   4.9e-26     154     245 .]     332     419 ..     324     419 .. 0.95

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 4.4e-20
                   CTSHSB-SHHHHHHHHHHHHHHCTTCEESS.TTSEEEHHHHTSTTTSTTTSHHHCHTTSEBTCTSSS-ECESEEE-SSTHHHHHHHH........TT CS
  tRNA-synt_2d  10 rieagklhpltkvleeikeiflelgfeeve.gpevesefynfdaLnvpqdhpaRdmqdtFylkkpekaveekllLRthttavqirtl........ek 97 
                   +++ ++ hpl  ++  ++++f e  ++     + v +   nfd L +p+dhp R+ +dt+y+       +++ +LRtht+a +  +          +
    KKY17458.1 122 KLYLSEDHPLCITKTLVESVFQEPTYKNYFhVNPVVTTALNFDLLGFPKDHPGRSKTDTYYV-------NKDHVLRTHTSAHEDESFrkigladqGN 211
                   55667889999999***********9987656667799************************.......5689********8644444449997433 PP

                   S-SSEEEEEEEEEEBSST-SSSB-SEEEEEEE CS
  tRNA-synt_2d  98 kkppikiisigrvfRrdavDathlaeFhqveg 129
                    ++   +  +  vfRrd+vD++h ++Fhq+eg
    KKY17458.1 212 GEAHDGFTLVADVFRRDSVDRSHYPVFHQMEG 243
                   444445667899*******************9 PP

  == domain 2  score: 91.7 bits;  conditional E-value: 1.1e-29
                   TSTEEEEEEECEETTEEEEEEEEEEECCSSSSEEEEEEEEEE-HHHHHHTT-.TTSEEEEEEEEHHHHHHHHHT-SSGHHHHTT.HHHHGGG CS
  tRNA-synt_2d 154 gaevkvrfrpsyfpftePsaevdvylvekkkkwlEllgaGmvrpevleavgideevsgfafGlGveRlamlkygieDiRelvendlrflrqf 245
                   ++ +k r+ ++yfpft Ps e++v++   k++wlEllg+G+ ++++l+ +gi  +  g a+G+G+eRlaml +gi+DiR ++++d rfl qf
    KKY17458.1 332 EEPIKARWVEAYFPFTAPSYELEVWW---KGEWLELLGCGVSKQSILDTAGI-PNRIGWAWGIGLERLAMLLFGIPDIRLFWSEDSRFLGQF 419
                   556899********************...9**********************.7788********************************987 PP

>> FDX-ACB  Ferredoxin-fold anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   6.8e-26   3.1e-22       1      94 []     431     564 .]     431     564 .] 0.99

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 6.8e-26
                 -SS--EEEEEEEEEES...........................................SS-HHHHHHHHHHHH-TTEEEEEEEEEEESTTS-SSEEEE CS
     FDX-ACB   1 SkfPaverDlalvvde...........................................kveaaelleavreaagellesvqlfDvYrgkklaegkkSl 56 
                 Sk+P + +D+a+++d                                            ++++++l+e+vr+ ag+l+e+v+l+D ++++k  +g++Sl
  KKY17458.1 431 SKYPTCFKDVAFWIDPkppcsavspanksapinsgpaaaaaaggyptvpqsdapppssdTFHENDLMEIVRDIAGSLVEDVRLVDSFQHPK--TGRRSL 527
                 9*********************************************************999******************************..9***** PP

                 EEEEEE--SSS---HHHHHHHHHHHHHHHHTT.T-BES CS
     FDX-ACB  57 alrltlqskertLtdeevnaaiekvvealekklgaelR 94 
                 ++r++++s ertLt+ee+n++++ v+e+l ++l++elR
  KKY17458.1 528 CYRINYRSLERTLTNEETNELHKLVLEKL-SQLDVELR 564
                 *****************************.99999998 PP

>> KapB  Kinase associated protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   6.9e-05      0.31      22      53 ..     278     310 ..     269     322 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.9e-05
        KapB  22 vlaV.lkhPtqGDLHnpkeadvvfFheRkALsy 53 
                 v++  ++ P+q D+Hnp+e+d v  h ++ L +
  KKY17458.1 278 VESFtKTNPMQDDVHNPEEIDLVAQHLKRSLEH 310
                 44441457*******************999976 PP

>> DUF2229  CoA enzyme activase uncharacterised domain (DUF2229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   7.2e-05      0.32     134     194 ..      54     111 ..      14     123 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.2e-05
     DUF2229 134 lgiskkeikkAvekAleaqkafkeelrkkgeelleeleeegkkgivllGrpYhildpeinh 194
                 ++++k +i++A+   +++++a+++++ + + +  + ++e +k+giv+ G pY  +d+e+n 
  KKY17458.1  54 YEAQKGTINAALFD-VRRYSAWQRRILELN-QPKKIVTEGDKRGIVVSGQPYE-IDDEANL 111
                 35555555555444.344455555544433.2222344579999*********.8888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 3435.23
//
Query:       KKY17459.1  [L=243]
Description: putative mitochondrial dicarboxylate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-45  151.5   0.6    9.4e-17   60.7   0.0    3.0  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.2   5.4e-12   9.7e-08      49      93 ..       2      46 ..       1      50 [. 0.93
   2 !   56.3   0.0   1.3e-19   2.3e-15       5      95 ..      52     144 ..      48     146 .. 0.87
   3 !   60.7   0.0   5.3e-21   9.4e-17       4      93 ..     151     237 ..     149     240 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 5.4e-12
                HHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr 49 ldvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93
                + ++ ++ k++G+ gly Gl+++llr+  +s ++f++ye lk  +
  KKY17459.1  2 FGTFVHVAKTQGIFGLYNGLSAALLRQLTYSTVRFGVYEELKSAY 46
                678999***********************************9876 PP

  == domain 2  score: 56.3 bits;  conditional E-value: 1.3e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS..STTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkks..skksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 + + +++++++g++++++ +P dv+ +r+q++  +  s+ ++++++ld l ++ +eeG+ +l++G++pn  r +  ++ ++++y+ +krl  +
  KKY17459.1  52 LPALIAMSSASGLLGGIAGNPGDVLNVRMQSDFAKpvSQRRNYKHALDGLIRMAREEGIVSLFKGVVPNSARAILMTSSQLASYDAFKRLCID 144
                 56677899***********************65551156666666********************************************9765 PP

  == domain 3  score: 60.7 bits;  conditional E-value: 5.3e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 +++ +l++++ ag vat+v+ P+dv+Ktr+++++  +   +   +   lk+iy +eGl+ ++rG++p+++r  p +  +f++ e+ k+++
  KKY17459.1 151 NPTTHLVSSLSAGFVATTVCSPVDVIKTRVMSASAAEGGHG---LPVLLKNIYAKEGLTWMFRGWVPSFIRLGPHTIFTFLFLEQHKHVY 237
                 57889*******************************99866...7779**************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1752.88
//
Query:       KKY17460.1  [L=349]
Description: putative ob-fold nucleic acid binding domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-10   40.3   0.1    6.8e-05   22.0   0.0    2.2  2  Stn1      Telomere regulation protein Stn1
  ------ inclusion threshold ------
        3.1    7.4  16.3        6.7    6.4  16.3    1.5  1  Casc1_N   Cancer susceptibility candidate 1 N-terminus


Domain annotation for each model (and alignments):
>> Stn1  Telomere regulation protein Stn1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   7.6e-09   6.8e-05      57     103 ..      78     121 ..      72     125 .. 0.92
   2 !   16.1   0.1   4.6e-07    0.0041     119     190 ..     169     244 ..     153     273 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 7.6e-09
                 -EEETTEEE-EEEEEEEEEEEEEE....TTEEEEEEE-SSS-EEEEE CS
        Stn1  57 ilfylnrpirrikvvGlvvgvkwklikgedkavlkiDDcsdkllkck 103
                  ++y n+pi+ + v G+vv v+ +   +  + +l +DD+s+++++++
  KKY17460.1  78 LFHYINHPIQYVSVAGVVVEVNEY---NPKYYILILDDSSGETIEIV 121
                 578*******************99...9*************998875 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 4.6e-07
                 -.TT-EEEEEEEEE..SSS-EEEEEEEEEE-STTHHHHHHHHHHHHHHH.HHHHHHHH-XXX.............. CS
        Stn1 119 l.iGstvavfGkln..reeveleveflelvkglesEiefWrkamllrke.Lakpweldpeklnelyegedeveeee 190
                 + +G t++v G +   +++ ++  + +  +++ ++E  fW++  +++ + L  pw+ ++e + e + + ++ + ++
  KKY17460.1 169 VdVGATLKVKGHIStfHDYRQIRLDRVSSISDTNEEARFWSSMREFHDNvLSRPWKPKDEDIAEAKAEARKNARKQ 244
                 349***********8889999999******************999987659*********9977666555544433 PP

>> Casc1_N  Cancer susceptibility candidate 1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  16.3   0.00074       6.7       2      58 ..     248     304 ..     247     309 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00074
     Casc1_N   2 elreeEeeRlraeeeererleeerrekeereqlaaeqarrkeeleelkplleerkea 58 
                 ++r++E+ Rlrae ee+ rl+ err ++e+++ a e+++  e  ee+++l+++rke+
  KKY17460.1 248 AARRRERVRLRAEIEEKGRLKLERRWEKEESRRAREAEKAREDGEEVRKLIRSRKEK 304
                 6899********************9888888779999999999999**999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       964  (0.0537676); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2529.62
//
Query:       KKY17461.1  [L=135]
Description: putative 60s ribosomal protein l27-a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-38  129.0   3.2    9.7e-38  128.4   3.2    1.3  1  Ribosomal_L27e  Ribosomal L27e protein family
  ------ inclusion threshold ------
      0.013   15.5   2.0      0.027   14.4   0.9    2.1  2  KOW             KOW motif


Domain annotation for each model (and alignments):
>> Ribosomal_L27e  Ribosomal L27e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.4   3.2   1.1e-41   9.7e-38       1      85 []      51     135 .]      51     135 .] 1.00

  Alignments for each domain:
  == domain 1  score: 128.4 bits;  conditional E-value: 1.1e-41
  Ribosomal_L27e   1 kVtkkmskkkiakrskikpFvKvvnynhlmpTRYtvdvedlkelvkkealkdpakrkeakkevkkkfeeryksgknkwffkkLrF 85 
                     kVt++m++k+++krsk+kpF+K+vnynhlmpTRYt+++e lk +v+++++k+++ r++akk+vkk++eery sgkn+wff++LrF
      KKY17461.1  51 KVTRRMGEKRVQKRSKVKPFIKTVNYNHLMPTRYTLELEGLKGVVSNDTFKEVSAREDAKKTVKKTLEERYLSGKNRWFFTPLRF 135
                     9***********************************************************************************9 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.9   3.1e-06     0.027       1      20 [.       6      25 ..       6      29 .. 0.92
   2 ?   -2.0   0.0      0.44     4e+03      13      19 ..      89      95 ..      88      97 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.1e-06
                TTSEEEESSSTTTTCEEEEE CS
         KOW  1 pGdhVkVvsGphkGktGkVv 20
                +G++ ++++G+++Gk+ ++ 
  KKY17461.1  6 VGRVAIITRGRYAGKKVVII 25
                799*************9997 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.44
                TTCEEEE CS
         KOW 13 kGktGkV 19
                +G +G+V
  KKY17461.1 89 EGLKGVV 95
                7999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 961.58
//
Query:       KKY17462.1  [L=1926]
Description: hypothetical protein UCRPC4_g05604 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.82    9.6   2.8        1.6    8.6   0.2    2.9  3  SCO1-SenC        SCO1/SenC
        0.9    9.4  12.2         32    4.4   0.1    6.2  7  DASH_Dam1        DASH complex subunit Dam1
        1.9    8.7  14.1        9.6    6.4   0.2    6.6  7  UBA_2            Ubiquitin associated domain (UBA)
        3.9    8.1   8.2       0.43   11.2   0.9    3.4  3  Scaffolding_pro  Phi29 scaffolding protein


Domain annotation for each model (and alignments):
>> SCO1-SenC  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.2   0.00036       1.6      66     111 ..     597     642 ..     569     647 .. 0.91
   2 ?   -1.6   0.0      0.52   2.3e+03      70      99 ..     805     834 ..     765     837 .. 0.82
   3 ?   -3.8   0.1       2.5   1.1e+04      49      81 ..    1240    1272 ..    1231    1293 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00036
   SCO1-SenC  66 DPerDtpevlkeyleafdpriigltGskeeiakaakefrvyvekve 111
                 D  +D  e+l++ +e++ +r + +tG+ e i+++ ++fr+ +  +e
  KKY17462.1 597 DAMKDGLEDLRADIESYVDRASDVTGKDEIIETVKEAFRALQDDME 642
                 8889***********************************9876655 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.52
   SCO1-SenC  70 DtpevlkeyleafdpriigltGskeeiaka 99 
                 D  +++ke l+++ ++i++l ++++++a++
  KKY17462.1 805 DILDDIKENLQNVRSEIEKLHDNQQQLAEV 834
                 778889999999999999999999999887 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 2.5
   SCO1-SenC   49 dalgeeaekvqplfiTvDPerDtpevlkeylea 81  
                  ++ +  +++ + +f  vD ++  +e+l+e l  
  KKY17462.1 1240 ETCERMGDDAKTVFNRVDETHGKVEELREELRT 1272
                  444455556666666666666666666655554 PP

>> DASH_Dam1  DASH complex subunit Dam1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         3   1.3e+04      15      30 ..      37      52 ..      33      60 .. 0.54
   2 ?   -3.9   0.0       2.9   1.3e+04      25      40 ..     718     733 ..     716     733 .. 0.76
   3 ?    4.4   0.1    0.0072        32       3      31 ..     788     816 ..     786     821 .. 0.90
   4 ?    1.0   0.1     0.086   3.9e+02       2      25 ..     811     834 ..     810     836 .. 0.79
   5 ?   -2.2   0.1      0.83   3.7e+03       5      19 ..    1050    1064 ..    1047    1070 .. 0.72
   6 ?    4.2   0.0    0.0085        38      11      39 ..    1103    1131 ..    1094    1132 .. 0.87
   7 ?    3.7   0.1     0.012        55      17      32 ..    1387    1402 ..    1372    1415 .. 0.74

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3
   DASH_Dam1 15 LdknledLqqihesLs 30
                L+++l  L +i  +L+
  KKY17462.1 37 LSSQLLSLTSICTNLQ 52
                4555555555555554 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.9
   DASH_Dam1  25 ihesLsdfNeSFasfL 40 
                 ++e+L+++ e +as+L
  KKY17462.1 718 VKEELEHLRETLASML 733
                 5678888888888876 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0072
   DASH_Dam1   3 pafaeLaDsletLdknledLqqihesLsd 31 
                   +++LaD   ++++ ++ L++i+e+L++
  KKY17462.1 788 ADMQKLADRPVDMSSGFDILDDIKENLQN 816
                 6799***********************98 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.086
   DASH_Dam1   2 epafaeLaDsletLdknledLqqi 25 
                 ++++++   ++e+L++n ++L ++
  KKY17462.1 811 KENLQNVRSEIEKLHDNQQQLAEV 834
                 567888888999999999999876 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 0.83
   DASH_Dam1    5 faeLaDsletLdknl 19  
                  +++L+D+l+ L++++
  KKY17462.1 1050 IESLHDKLKGLQEQI 1064
                  677788888777765 PP

  == domain 6  score: 4.2 bits;  conditional E-value: 0.0085
   DASH_Dam1   11 sletLdknledLqqihesLsdfNeSFasf 39  
                   +++Ld   e + ++ ++L++ Ne F+ f
  KKY17462.1 1103 LMKKLDGSEEGIVELAKTLESHNETFGTF 1131
                  378999999******************98 PP

  == domain 7  score: 3.7 bits;  conditional E-value: 0.012
   DASH_Dam1   17 knledLqqihesLsdf 32  
                  +n+++L++i+esLs++
  KKY17462.1 1387 SNMTKLDEIKESLSNM 1402
                  6777777777777764 PP

>> UBA_2  Ubiquitin associated domain (UBA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       3.3   1.5e+04      14      26 ..     334     346 ..     334     350 .. 0.79
   2 ?    6.4   0.2    0.0021       9.6      14      31 ..     428     456 ..     425     466 .. 0.74
   3 ?   -2.3   0.0       1.1     5e+03      16      30 ..     515     529 ..     506     538 .. 0.77
   4 ?   -2.1   0.0         1   4.5e+03      17      26 ..     623     632 ..     622     636 .. 0.82
   5 ?    2.0   0.1     0.052   2.3e+02       5      39 ..     660     694 ..     658     700 .. 0.82
   6 ?    3.5   0.0     0.017        75      16      40 ..     741     779 ..     738     780 .. 0.90
   7 ?   -0.8   0.1      0.39   1.8e+03      16      39 ..    1281    1309 ..    1279    1311 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3.3
       UBA_2  14 GYdkdeIieaLek 26 
                 G d++eI    e+
  KKY17462.1 334 GLDREEITQIVET 346
                 789****987765 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0021
       UBA_2  14 GYdkdeIieaLekaeks...........k 31 
                 G +++eIi+++++  +s            
  KKY17462.1 428 GIEREEIIDCIKQGMQSyqaqshareagA 456
                 99***********9999766555555555 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.1
       UBA_2  16 dkdeIieaLekaeks 30 
                  +d++ ea ++   +
  KKY17462.1 515 TRDDVFEAVKDGLAT 529
                 69******9987655 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 1
       UBA_2  17 kdeIieaLek 26 
                 kdeIie  ++
  KKY17462.1 623 KDEIIETVKE 632
                 9*****9876 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.052
       UBA_2   5 vvsaLsktMGYdkdeIieaLekaekskssneIkDA 39 
                 + +a++k  +Y ++ I   + ++   + + eI+DA
  KKY17462.1 660 LLDAMEKEFNYLRETITKTMVQSASPNDKAEILDA 694
                 67889999999999999887666666699999998 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.017
       UBA_2  16 dkdeIieaLekaeks..............kssneIkDAY 40 
                 +++eI+ea ++a +               ++++e +DA+
  KKY17462.1 741 EREEIQEAVREAMDAhhvsrkmdgsesmlSNTSELLDAF 779
                 79*********9999899999999999999999999998 PP

  == domain 7  score: -0.8 bits;  conditional E-value: 0.39
       UBA_2   16 dkdeIieaLekaeks.....kssneIkDA 39  
                   +deI   + +ae+      + + +++DA
  KKY17462.1 1281 TRDEIAKTISAAERLeaqlnEHHPAVLDA 1309
                  79******999998876666666777776 PP

>> Scaffolding_pro  Phi29 scaffolding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.5   1.6e+04      22      53 ..     597     628 ..     590     636 .. 0.73
   2 ?   -2.2   0.3       1.5   6.5e+03      29      57 ..    1186    1214 ..    1143    1226 .. 0.71
   3 ?   11.2   0.9   9.7e-05      0.43       2      78 ..    1429    1505 ..    1428    1523 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.5
                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Scaffolding_pro  22 eertealqtlrvdyvevvveysdltksieklk 53 
                      +   + l  lr d  ++v   sd t + e ++
       KKY17462.1 597 DAMKDGLEDLRADIESYVDRASDVTGKDEIIE 628
                      55567788999999999999999887776655 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.5
                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Scaffolding_pro   29 qtlrvdyvevvveysdltksieklkvekd 57  
                        +l ++++e++++y+d  +  e+ + e  
       KKY17462.1 1186 DKLEEKFTELMIKYDDAQQASEASRSENT 1214
                       45667777777777777777777776665 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 9.7e-05
                       --HHHHHHHHHHHTSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...CHH CS
  Scaffolding_pro    2 lkPeehedilndlldPelaieertealqtlrvdyvevvveysdltksieklkvekddlivsnsklfrkiGldggtek 78  
                       l  e+h++   +  +  +a e+rt +  ++  d v +  e ++ + s+ +l+ +++dl     +l r++G+   + +
       KKY17462.1 1429 LMAEHHDSKAQEAAEAAIALEKRTAQKENVEADIVRLSLEREEIAASVAALRRDQADLSGQTKRLTREVGVLETALN 1505
                       56788888899999999*****************************************************9444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1926 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1865  (0.104021); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.57u 0.34s 00:00:01.91 Elapsed: 00:00:00.58
# Mc/sec: 10069.94
//
Query:       KKY17463.1  [L=170]
Description: putative ribose 5-phosphate isomerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-44  150.7   0.1    2.8e-44  150.5   0.1    1.0  1  LacAB_rpiB      Ribose/Galactose Isomerase
  ------ inclusion threshold ------
      0.087   12.8   0.1       0.13   12.3   0.1    1.3  1  Gly_rich_SFCGS  Glycine-rich SFCGS


Domain annotation for each model (and alignments):
>> LacAB_rpiB  Ribose/Galactose Isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   0.1   3.1e-48   2.8e-44       1     139 []      17     158 ..      17     158 .. 0.95

  Alignments for each domain:
  == domain 1  score: 150.5 bits;  conditional E-value: 3.1e-48
                 EEEEE-GCGHHHHHHHHHHHHH..TTTEEEEECESS.SS---HHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHHHHTSTT--EEE-SSHHHHHHHHHT CS
  LacAB_rpiB   1 iaigsDhagfelkekikeyLke..kghevidvgtes.eesvdYpdfakkvaeavasgeadlgiliCgtGiGmsiaaNkvkgiraalchdeesAklareh 96 
                 i++gsD+ag ++k++ik++L++  +   v+dvg+++ ++   Yp++a ++a+ va+gead+++liCgtG G++i+aNkv+gira+++hd++s+++a ++
  KKY17463.1  17 IVVGSDNAGHDYKDTIKKQLESdaRVSRVFDVGVQDaDDPQAYPHIAVDAAQMVAKGEADRALLICGTGLGVAISANKVPGIRAVTAHDSYSVERAIKS 115
                 89******************66323569*****999999************************************************************ PP

                 T--SEEEEETTTS-HHHHHHHHHHHHHS---.HTHHHHHHHHH CS
  LacAB_rpiB  97 nnanvlalGarvigeelakeivkaFletefeeggrharrvdki 139
                 n+a+vl++G+rv+g+elak++v ++l+++f++++++a++v+ i
  KKY17463.1 116 NDAQVLCFGQRVLGIELAKQLVGQWLDHRFDTSSASAEKVKAI 158
                 ******************************9999*****9976 PP

>> Gly_rich_SFCGS  Glycine-rich SFCGS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.4e-05      0.13      40     111 ..      68     140 ..      43     143 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.4e-05
  Gly_rich_SFCGS  40 dvmkkeeadlgisfcgsggagaltaqtkygyka..kyglrsveegvtaikegkkvlgfgf.ldkeelgkrlveay 111
                     +++ k ead  + +cg+g   a+ a++  g +a   ++  sve  + +  + ++vl fg  +   el k+lv ++
      KKY17463.1  68 QMVAKGEADRALLICGTGLGVAISANKVPGIRAvtAHDSYSVERAIKS--NDAQVLCFGQrVLGIELAKQLVGQW 140
                     5678899********************99*986225777888887764..6788999996234567888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1222.86
//
Query:       KKY17464.1  [L=283]
Description: putative u-box domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-23   81.4   0.0    7.4e-23   80.5   0.0    1.5  1  U-box        U-box domain
    9.5e-15   54.7   1.2    4.5e-09   36.5   0.0    3.0  3  TPR_12       Tetratricopeptide repeat
    2.1e-12   46.3   0.6    1.2e-05   24.9   0.1    4.2  5  TPR_1        Tetratricopeptide repeat
    2.6e-11   42.7   2.0    6.3e-05   22.8   0.1    3.9  3  TPR_2        Tetratricopeptide repeat
    2.8e-09   37.4   1.0    8.9e-07   29.5   0.1    2.8  2  TPR_16       Tetratricopeptide repeat
    2.8e-06   27.0   7.5      0.064   13.1   0.3    4.1  4  TPR_10       Tetratricopeptide repeat
    3.2e-06   27.1   0.3       0.11   12.9   0.0    3.6  3  TPR_17       Tetratricopeptide repeat
    1.1e-05   25.9   3.3     0.0066   16.9   0.1    3.1  3  TPR_19       Tetratricopeptide repeat
    1.3e-05   24.7   0.8    0.00021   20.9   0.1    2.5  2  TPR_11       TPR repeat
    0.00023   21.0   1.0      0.039   14.0   0.1    3.7  3  TPR_7        Tetratricopeptide repeat
    0.00046   20.8   4.1      0.069   14.0   0.0    4.1  4  TPR_14       Tetratricopeptide repeat
    0.00074   19.5   7.4       0.26   11.6   0.5    3.2  3  TPR_8        Tetratricopeptide repeat
     0.0022   18.1   0.0     0.0044   17.1   0.0    1.5  1  zf-NOSIP     Zinc-finger of nitric oxide synthase-interacting
     0.0027   17.9   0.1       0.98    9.7   0.0    2.5  2  ANAPC3       Anaphase-promoting complex, cyclosome, subunit 3
     0.0041   17.6   0.0        9.9    7.1   0.0    3.6  3  TPR_4        Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.035   14.9   5.6      0.035   14.9   5.6    1.8  1  CHIP_TPR_N   CHIP N-terminal tetratricopeptide repeat domain
      0.064   13.2   0.6       0.17   11.8   0.1    2.0  2  SCAB-ABD     Actin-binding domain of plant-specific actin-bin
       0.13   12.2   0.0       0.28   11.1   0.0    1.5  1  T3SS_NleG    Effector protein NleG
       0.13   12.3   2.8        2.5    8.2   1.0    3.0  2  MCC-bdg_PDZ  PDZ domain of MCC-2 bdg protein for Usher syndro
       0.29   11.9   3.1         34    5.4   0.2    3.5  3  TPR_6        Tetratricopeptide repeat
        5.4    7.6   5.4         15    6.2   0.8    2.7  2  Pet100       Pet100


Domain annotation for each model (and alignments):
>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0   8.7e-26   7.4e-23       1      73 []     208     279 ..     208     279 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 8.7e-26
                 SSGGGB-TTT-SB-SSEEEETTTEEEEHHHHHHHHTT.SSB-TTT-SB--GGGSEE-HHHHHHHHHHHHHCTC CS
       U-box   1 iPdefldpitlelmkdPvilpsgvvvdrstiekhllsrdktdPftrepltqdqlipnlelKekIdefleekre 73 
                 +P++++d++t+e+m dPvi+psg +++r+++ k+l+  +++dP+tr plt++q+ipn++l+e  ++fl ++ +
  KKY17464.1 208 VPEYLIDSMTFEIMHDPVITPSGASYERASLLKYLKD-HPHDPLTRDPLTESQIIPNRALRECCEAFLDQNGW 279
                 8************************************.*******************************9975 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.8e-05     0.015      47      74 ..       3      30 ..       2      33 .. 0.91
   2 !   36.5   0.0   5.3e-12   4.5e-09       5      76 ..      37     104 ..      34     105 .. 0.95
   3 ?   -0.8   0.1       2.2   1.9e+03      39      70 ..     153     183 ..     133     184 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.8e-05
      TPR_12 47 tlrnLgrlyralgryeeAlelleealai 74
                +lr Lg  ++++g+y+eA++l+++a++ 
  KKY17464.1  3 SLRELGNEQFKAGNYKEAEALYTQAIQH 30
                6899*********************986 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 5.3e-12
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +l+n+a++ ++l+++  A++  ++a+e++    Gpd+     +++nL++++  l+r++eAle+ ++++++a 
  KKY17464.1  37 LLSNRAMTRLKLQDWPGAESDSQEAVERI----GPDNNKSMKSYYNLAQALIGLKRPAEALEMGKKSYQMAL 104
                 789**********************9999....9***********************************985 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 2.2
      TPR_12  39 pdhpltattlrnLgrlyralgryeeAlellee 70 
                 ++++ +++++++ g +  + g+ eeA ++ ee
  KKY17464.1 153 ENSLRELQSQFDQGLV-GQVGKDEEAAAIKEE 183
                 6788888899999999.789999999887665 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   1.4e-08   1.2e-05       6      33 ..       6      33 ..       3      34 .. 0.92
   2 ?    3.3   0.0     0.095        81       2      28 ..      36      62 ..      35      64 .. 0.82
   3 !   12.6   0.1   0.00011     0.094       2      22 ..      74      94 ..      74      95 .. 0.94
   4 ?   -1.1   0.0       2.3     2e+03      22      29 ..      98     105 ..      96     107 .. 0.79
   5 ?   -2.6   0.0       6.9   5.9e+03       5      17 ..     233     245 ..     231     246 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.4e-08
                HHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  6 nlGnayfklgkydeAleyyekALelnPn 33
                 lGn  fk g+y+eA++ y +A++++ +
  KKY17464.1  6 ELGNEQFKAGNYKEAEALYTQAIQHDSS 33
                69***********************987 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.095
                HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1  2 kalynlGnayfklgkydeAleyyekAL 28
                + l n++++ +kl+++  A+ + ++A+
  KKY17464.1 36 RLLSNRAMTRLKLQDWPGAESDSQEAV 62
                6799************99987766665 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 0.00011
                HHHHHHHHHHHHTT-HHHHHH CS
       TPR_1  2 kalynlGnayfklgkydeAle 22
                k++ynl++a+  l+++ eAle
  KKY17464.1 74 KSYYNLAQALIGLKRPAEALE 94
                68*****************98 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 2.3
                 HHHHHHHH CS
       TPR_1  22 eyyekALe 29 
                 + y+ ALe
  KKY17464.1  98 KSYQMALE 105
                 67899987 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 6.9
                 HHHHHHHHHTT-H CS
       TPR_1   5 ynlGnayfklgky 17 
                 y ++ ++ +l+++
  KKY17464.1 233 YERASLLKYLKDH 245
                 6778888888775 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   7.4e-08   6.3e-05       4      32 ..       4      32 ..       2      34 .. 0.92
   2 ?    4.2   0.0     0.067        57       2      28 ..      36      62 ..      35      64 .. 0.84
   3 !   12.9   0.2   0.00011     0.095       3      27 ..      75      99 ..      73     104 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 7.4e-08
       TPR_2  4 lynlGlayyklgdyeeAleafekAleldP 32
                l +lG+  +k+g+y+eA++++ +A+++d 
  KKY17464.1  4 LRELGNEQFKAGNYKEAEALYTQAIQHDS 32
                679***********************986 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.067
       TPR_2  2 ealynlGlayyklgdyeeAleafekAl 28
                ++l n+++  +kl+d+  A+ + ++A+
  KKY17464.1 36 RLLSNRAMTRLKLQDWPGAESDSQEAV 62
                6899**************998766665 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 0.00011
       TPR_2  3 alynlGlayyklgdyeeAleafekA 27
                 +ynl++a++ l++++eAle  +k+
  KKY17464.1 75 SYYNLAQALIGLKRPAEALEMGKKS 99
                79*****************966665 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.1     1e-09   8.9e-07       3      67 ..       7      69 ..       5      70 .. 0.91
   2 ?    5.9   0.0     0.024        20      36      55 ..      75      94 ..      71     103 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1e-09
      TPR_16  3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyraalraapda 67
                l+++ ++ag+y +A+a++++a+  d+    +++ l +++  +l+++++++A+ +  +a  r +pd+
  KKY17464.1  7 LGNEQFKAGNYKEAEALYTQAIQHDS---SDPRLLSNRAMTRLKLQDWPGAEsDSQEAVERIGPDN 69
                899**********************5...5555*******************99999988999997 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.024
      TPR_16 36 AllllgdaalrqgrlaeAaa 55
                ++++l++a+  ++r aeA++
  KKY17464.1 75 SYYNLAQALIGLKRPAEALE 94
                68999999999999999986 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.3   7.5e-05     0.064       4      30 ..       3      29 ..       3      29 .. 0.93
   2 ?    3.4   0.0     0.086        74       5      31 ..      38      64 ..      36      65 .. 0.91
   3 !   12.2   0.1   0.00015      0.12       4      32 ..      75     103 ..      73     106 .. 0.91
   4 ?   -1.8   0.1       3.8   3.3e+03      14      24 ..     170     180 ..     169     183 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.5e-05
      TPR_10  4 slnNLanalrqrgrydeAealleeala 30
                sl  L+n  ++ g+y+eAeal+ +a++
  KKY17464.1  3 SLRELGNEQFKAGNYKEAEALYTQAIQ 29
                6789*********************96 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.086
      TPR_10  5 lnNLanalrqrgrydeAealleealai 31
                l+N a++  +++++ +Ae + +ea+++
  KKY17464.1 38 LSNRAMTRLKLQDWPGAESDSQEAVER 64
                789999999***************986 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 0.00015
      TPR_10   4 slnNLanalrqrgrydeAealleealair 32 
                 s+ NLa al  ++r +eA+++ ++++++ 
  KKY17464.1  75 SYYNLAQALIGLKRPAEALEMGKKSYQMA 103
                 899********************999985 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 3.8
      TPR_10  14 qrgrydeAeal 24 
                 q+g+ +eA a+
  KKY17464.1 170 QVGKDEEAAAI 180
                 67888888776 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.78   6.7e+02      15      33 ..       3      21 ..       2      22 .. 0.83
   2 !   12.9   0.0   0.00013      0.11       1      33 [.      23      55 ..      23      56 .. 0.92
   3 !    8.8   0.0    0.0028       2.4      12      34 .]      72      94 ..      58      94 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.78
      TPR_17 15 aynnLAelllknGdlmtAr 33
                ++ +L++ + k+G++++A+
  KKY17464.1  3 SLRELGNEQFKAGNYKEAE 21
                56788888899*******8 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00013
      TPR_17  1 lylkaleldPnnadaynnLAelllknGdlmtAr 33
                ly++a+++d +++ ++ n+A + lk+ d+  A+
  KKY17464.1 23 LYTQAIQHDSSDPRLLSNRAMTRLKLQDWPGAE 55
                7***********************999987765 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0028
      TPR_17 12 nadaynnLAelllknGdlmtArq 34
                + ++y+nLA++l  ++++++A++
  KKY17464.1 72 SMKSYYNLAQALIGLKRPAEALE 94
                4789********99999999975 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   7.7e-06    0.0066       2      45 ..      12      55 ..      11      56 .. 0.93
   2 !    8.6   0.2    0.0031       2.6      20      47 ..      68      95 ..      54      98 .. 0.79
   3 ?   -2.3   0.0       7.9   6.7e+03       7      24 ..     137     154 ..     135     156 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 7.7e-06
      TPR_19  2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAe 45
                +++g+y eA al++qa+q+d  +++++ + A   l+l ++  Ae
  KKY17464.1 12 FKAGNYKEAEALYTQAIQHDSSDPRLLSNRAMTRLKLQDWPGAE 55
                689****************************9999999998886 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0031
      TPR_19 20 edpknaearllLAeallalgqldeAeal 47
                +++k+    ++LA+al+ l++++eA ++
  KKY17464.1 68 DNNKSMKSYYNLAQALIGLKRPAEALEM 95
                5777778899***************985 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 7.9
      TPR_19   7 yaeAlalleqalqedpkn 24 
                 +++ l+l e++l+e  +n
  KKY17464.1 137 LDSTLRLVEEMLDERKEN 154
                 567789999999998877 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   2.5e-07   0.00021       1      37 [.       8      44 ..       8      49 .. 0.91
   2 ?    1.6   0.1      0.27   2.3e+02      29      38 ..      74      83 ..      69      86 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.5e-07
      TPR_11  1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGla 37
                G++ ++ G+y+eA + Y +A++ d++++++++n++ +
  KKY17464.1  8 GNEQFKAGNYKEAEALYTQAIQHDSSDPRLLSNRAMT 44
                8999*****************************9865 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.27
      TPR_11 29 eayynLGlay 38
                  yynL++a+
  KKY17464.1 74 KSYYNLAQAL 83
                57*****996 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   4.6e-05     0.039       4      34 ..       6      34 ..       3      36 .. 0.76
   2 ?    0.5   0.0      0.92   7.9e+02       2      19 ..      38      55 ..      37      63 .. 0.87
   3 ?    2.4   0.1      0.23     2e+02       1      25 [.      75      99 ..      75     113 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.6e-05
       TPR_7  4 nLarlysrlGdyeeAielyeqsLaltkdped 34
                 L++ +++ G+y+eA+ ly+q  a+  d +d
  KKY17464.1  6 ELGNEQFKAGNYKEAEALYTQ--AIQHDSSD 34
                566667899************..77666555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.92
       TPR_7  2 LlnLarlysrlGdyeeAi 19
                L+n a ++ +l+d+  A+
  KKY17464.1 38 LSNRAMTRLKLQDWPGAE 55
                7899999999***98886 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.23
       TPR_7  1 aLlnLarlysrlGdyeeAielyeqs 25
                +++nLa++   l + +eA+e  ++s
  KKY17464.1 75 SYYNLAQALIGLKRPAEALEMGKKS 99
                699*****99999999999876664 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0     8e-05     0.069       5      38 ..       5      38 ..       2      46 .. 0.85
   2 ?    4.5   0.1     0.093        80       4      23 ..      76      95 ..      73     110 .. 0.88
   3 ?   -0.6   0.1       3.9   3.3e+03      13      34 ..     133     154 ..     131     159 .. 0.83
   4 ?   -0.7   0.0       4.3   3.7e+03      22      37 ..     236     251 ..     235     254 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8e-05
      TPR_14  5 lalaeallalGdpdeAiallrralalaPddaeaw 38
                ++l+   + +G+++eA+al+ +a++++ +d++++
  KKY17464.1  5 RELGNEQFKAGNYKEAEALYTQAIQHDSSDPRLL 38
                678888899******************9999987 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.093
      TPR_14  4 llalaeallalGdpdeAial 23
                ++ la+al  l +p+eA+++
  KKY17464.1 76 YYNLAQALIGLKRPAEALEM 95
                7889*************987 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 3.9
      TPR_14  13 alGdpdeAiallrralalaPdd 34 
                 +l+++d  ++l +++l+   ++
  KKY17464.1 133 RLRELDSTLRLVEEMLDERKEN 154
                 7899999999999999876655 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 4.3
      TPR_14  22 allrralalaPddaea 37 
                 a l ++l+++P d+ +
  KKY17464.1 236 ASLLKYLKDHPHDPLT 251
                 56788999***99876 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.2   0.00059       0.5       7      29 ..       7      29 ..       6      34 .. 0.90
   2 !   11.6   0.5    0.0003      0.26       2      23 ..      74      95 ..      74     105 .. 0.85
   3 ?   -1.9   0.1       6.2   5.3e+03       5      16 ..     233     244 ..     230     245 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00059
                HHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8  7 lgsiylklgdyeeAkeyyekale 29
                lg+  +k g+y+eA++ y +a++
  KKY17464.1  7 LGNEQFKAGNYKEAEALYTQAIQ 29
                789999***************96 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.0003
                CHHHHHHHHHHHTT-HHHHHHH CS
       TPR_8  2 eayynlgsiylklgdyeeAkey 23
                ++yynl+++++ l++  eA e 
  KKY17464.1 74 KSYYNLAQALIGLKRPAEALEM 95
                58*****************986 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 6.2
                 HHHHHHHHHTT- CS
       TPR_8   5 ynlgsiylklgd 16 
                 y  +s+++ l+d
  KKY17464.1 233 YERASLLKYLKD 244
                 667788887777 PP

>> zf-NOSIP  Zinc-finger of nitric oxide synthase-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   5.1e-06    0.0044       3      71 ..     173     242 ..     171     245 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5.1e-06
    zf-NOSIP   3 knctagavytyhekkkdtaasgyg.tqsvrlikdavkdfdccslslqacrdpvltedgylyekeaileyi 71 
                 k+  a a+   h+ + +   + +  t + +     v ++   s++++  +dpv+t+ g  ye+ ++l+y+
  KKY17464.1 173 KDEEAAAIKEEHKMRTEQVRAAFAdTSKPETQERVVPEYLIDSMTFEIMHDPVITPSGASYERASLLKYL 242
                 555566666666666555544443144445555567778888999999*********************7 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.019        16      33      72 ..      11      51 ..       5      56 .. 0.75
   2 !    9.7   0.0    0.0011      0.98      41      77 ..      60      94 ..      54      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.019
                HHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-H CS
      ANAPC3 33 lylngqykrAyellrka.klnskslgcrylfAqcllkLkky 72
                 +++g+yk+A  l+ +a + +s++++ +   A + lkL+ +
  KKY17464.1 11 QFKAGNYKEAEALYTQAiQHDSSDPRLLSNRAMTRLKLQDW 51
                58999999999999999777777776666666666666666 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0011
                HHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHH CS
      ANAPC3 41 rAyellrkaklnskslgcrylfAqcllkLkkyeeAia 77
                +A e + +   n+ks+++ y +Aq+l+ Lk+  eA+ 
  KKY17464.1 60 EAVERIGPD--NNKSMKSYYNLAQALIGLKRPAEALE 94
                555556666..99**********************86 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.23     2e+02       7      23 ..       7      23 ..       2      24 .. 0.81
   2 ?    2.8   0.0      0.28   2.4e+02       1      21 [.      35      55 ..      35      56 .. 0.93
   3 ?    7.1   0.0     0.012       9.9       4      23 ..      76      95 ..      74      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.23
       TPR_4  7 LArallalGdldeAral 23
                L+  ++ +G++ eA+al
  KKY17464.1  7 LGNEQFKAGNYKEAEAL 23
                66668889*******98 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.28
       TPR_4  1 arallaLArallalGdldeAr 21
                +r+l+++A++ l l d++ A+
  KKY17464.1 35 PRLLSNRAMTRLKLQDWPGAE 55
                7899**************997 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.012
       TPR_4  4 llaLArallalGdldeAral 23
                +++LA+al  l +++eA+++
  KKY17464.1 76 YYNLAQALIGLKRPAEALEM 95
                68***************985 PP

>> CHIP_TPR_N  CHIP N-terminal tetratricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   5.6   4.1e-05     0.035       1      75 [.     121     197 ..     121     201 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.1e-05
                 HHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCTTCCHGTTTSXCHH..HCHHHHHHHHHHHHHHHHHHHHHHH CS
  CHIP_TPR_N   1 AkkkrfrkeEekRikqEieLqsyLnkLideDkerkleeleeeeekeedek..leeeeeeieeeaderlaeLnelFaq 75 
                 Akk++++++E +R+++  +  + +++++de ke++l+el+++ ++    +  ++ee+++i+ee++ r++++ + Fa 
  KKY17464.1 121 AKKEIWQEKETRRLRELDSTLRLVEEMLDERKENSLRELQSQFDQGLVGQvgKDEEAAAIKEEHKMRTEQVRAAFAD 197
                 9*************998888888999************966655544444458899999************999985 PP

>> SCAB-ABD  Actin-binding domain of plant-specific actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1         5   4.2e+03       6      13 ..     128     135 ..     123     138 .. 0.77
   2 ?   11.8   0.1    0.0002      0.17      11      34 ..     146     178 ..     144     185 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5
    SCAB-ABD   6 akEtadLv 13 
                 +kEt +L 
  KKY17464.1 128 EKETRRLR 135
                 79999986 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.0002
    SCAB-ABD  11 dLvdqhkRLSVRDLasKFekgl.........aA 34 
                 +++d +k  S R+L s F++gl         aA
  KKY17464.1 146 EMLDERKENSLRELQSQFDQGLvgqvgkdeeAA 178
                 678999999*************77777775333 PP

>> T3SS_NleG  Effector protein NleG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00032      0.28      68      97 ..     233     262 ..     230     276 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00032
   T3SS_NleG  68 yDkealselvkegathPlsRepltasmivs 97 
                 y++++l + +k++ + Pl+R+plt+s i+ 
  KKY17464.1 233 YERASLLKYLKDHPHDPLTRDPLTESQIIP 262
                 88999*********************9995 PP

>> MCC-bdg_PDZ  PDZ domain of MCC-2 bdg protein for Usher syndrome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.24     2e+02      44      60 ..     100     116 ..      92     119 .. 0.86
   2 ?    8.2   1.0    0.0029       2.5       4      27 ..     132     155 ..     130     196 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.24
  MCC-bdg_PDZ  44 LvlALeyserlkeayev 60 
                  +++ALe+ +r  e+ ++
   KKY17464.1 100 YQMALETRDRSTEIMSQ 116
                  79***********9988 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0029
  MCC-bdg_PDZ   4 srIeeLkaqnelLsltleerkqqs 27 
                  +r+ eL ++++l++ +l+erk++s
   KKY17464.1 132 RRLRELDSTLRLVEEMLDERKENS 155
                  899*******************98 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.052        44       7      28 ..       8      29 ..       3      32 .. 0.85
   2 ?   -1.2   0.0       4.9   4.2e+03       6      19 ..      41      54 ..      38      64 .. 0.69
   3 ?    5.4   0.2      0.04        34       2      21 ..      75      94 ..      74     110 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.052
                HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  7 alsyrklgdtdkAlealerlik 28
                +  ++k+g++ +A +++ + i+
  KKY17464.1  8 GNEQFKAGNYKEAEALYTQAIQ 29
                55588999***********997 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 4.9
                HHHHHHHHHHHHHH CS
       TPR_6  6 lalsyrklgdtdkA 19
                +a+ ++kl+d+  A
  KKY17464.1 41 RAMTRLKLQDWPGA 54
                68888996577666 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.04
                HHHHHHHHHHHHHHHHHHHH CS
       TPR_6  2 AlyklalsyrklgdtdkAle 21
                ++y+la++++ l+++++Ale
  KKY17464.1 75 SYYNLAQALIGLKRPAEALE 94
                69*********99*****98 PP

>> Pet100  Pet100
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.21   1.8e+02      27      60 ..      34      68 ..      27      78 .. 0.81
   2 ?    6.2   0.8     0.017        15      29      68 ..     112     154 ..     110     162 .. 0.62

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.21
      Pet100 27 qpeyfee.fvvktkreffppeekelreeleelkee 60
                +p ++ +  ++  k + +p +e++ +e++e++  +
  KKY17464.1 34 DPRLLSNrAMTRLKLQDWPGAESDSQEAVERIGPD 68
                677888878999*******9999999999998655 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.017
      Pet100  29 eyfeefvvktkreffppeekelreele...elkeerlakrekk 68 
                 e+  +f+++ k+e+++ +e+   +el+   +l ee+l++r+++
  KKY17464.1 112 EIMSQFILQAKKEIWQEKETRRLRELDstlRLVEEMLDERKEN 154
                 67789***********777775555552223334444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       934  (0.0520944); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 1797.07
//
Query:       KKY17465.1  [L=93]
Description: putative acyl binding family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-20   73.0   0.7    1.9e-20   72.9   0.7    1.0  1  ACBP      Acyl CoA binding protein


Domain annotation for each model (and alignments):
>> ACBP  Acyl CoA binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.7   1.1e-24   1.9e-20       3      84 ..       5      86 ..       3      87 .. 0.89

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 1.1e-24
                HHHHHHHHH.H...HSTS---HHHHHHHHHHHHHHHTSS-.-S-.---TTSHHHHHHHHHHHH..TTT--HHHHHHHHHHHHHHHH CS
        ACBP  3 eFekavaavkklekklkkkpsneeklelYglyKqateGdv.nts.rPsaldfkgkaKwdaWka..lkglskeeAkkkYiellkelv 84
                +F++av++  +   klk kp+n+e+lelY+l+Kqa + +  ++s  P+ +d+kgkaK +aW++   +g+++++A+ kY++l+++l+
  KKY17465.1  5 AFKAAVEQS-R---KLKAKPTNDELLELYALFKQAEQDPPiEKSeTPGTFDLKGKAKRKAWQKivDEGVTPADAETKYVALVESLK 86
                799999999.5...57889*****************966535566******************6669****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.46
# Mc/sec: 604.69
//
Query:       KKY17466.1  [L=807]
Description: putative calcineurin-like phosphoesterase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.8e-119  398.0   4.6    3.6e-62  210.6   0.1    2.2  2  Tyr-DNA_phospho  Tyrosyl-DNA phosphodiesterase
    2.2e-08   34.8   0.6    8.3e-08   33.0   0.6    2.0  1  Metallophos      Calcineurin-like phosphoesterase
    5.4e-05   23.4   0.9     0.0007   19.8   0.4    2.8  2  Metallophos_2    Calcineurin-like phosphoesterase superfamily
    0.00077   19.3   0.2       0.37   10.7   0.0    3.1  3  PLDc_2           PLD-like domain


Domain annotation for each model (and alignments):
>> Tyr-DNA_phospho  Tyrosyl-DNA phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.3   1.8   2.4e-59   1.1e-55       1     144 [.     394     535 ..     394     542 .. 0.96
   2 !  210.6   0.1   8.1e-66   3.6e-62     227     424 .]     537     780 ..     529     780 .. 0.87

  Alignments for each domain:
  == domain 1  score: 189.3 bits;  conditional E-value: 2.4e-59
                      EEE--TTTT----------EE-HHHHH--TTEEEEEEE-S-EEHHHHHTTS.-T-...-EEEEEE..............ETTSEE-TEEEEEE- CS
  Tyr-DNA_phospho   1 plkltkirdlpeesernkdtitlkdilgdplleeavqfnFlfdlefllsqldedvrrkvkvvivhgakkeedeererleekakrypnvelieak 94 
                      p++lt+i+dlp+++  n+dt++l+dilgdpl++e++qfn+lfd+++l++++d+dvr+ v+v+ivhg++k+e ++r++++++++r pnv++i+a+
       KKY17466.1 394 PFQLTHIQDLPADY--NADTVKLNDILGDPLIKECWQFNYLFDIDWLMTHFDSDVRDIVQVKIVHGSWKKEASNRIAIDDACQRRPNVKAITAY 485
                      79*********888..89**************************************************************************** PP

                      --.TT--B---EEEEEETTSEEEEEEESS-BSHHHHHSSB-EEEE---EE CS
  Tyr-DNA_phospho  95 mpepfgthHsKmmilfyeddslrvvihtaNlieaDwgnmtqgvwrspllp 144
                      +p+pfgthHsKmmil+++dd ++vviht+N+i++Dw+nm+q+v ++   +
       KKY17466.1 486 LPDPFGTHHSKMMILIRHDDFVQVVIHTSNMIPQDWTNMSQAVPCQQVAS 535
                      ******************************************98877655 PP

  == domain 2  score: 210.6 bits;  conditional E-value: 8.1e-66
                      T----EEEEEEE-SBB---S-.SSS---HHHHTHHHHHTTSS---HHH..HHTEEEE..EE--BSGGGTTSTTGGGGGGG-B---...SGGHHH CS
  Tyr-DNA_phospho 227 eekskeleivaqvSSigslgstekwlknefleslspalqgkdkskeee..ekkskpkfkiifPtveevrrsldgyasggsihfkiqsaqqqkql 318
                      ++++ + ++v+qvSSi++lg+++++lk++++++ls++++   +    +   ++++ kf+iifP +e++r+sldgy+sg+sih+k qs+ +q+ql
       KKY17466.1 537 TKRTARPHVVVQVSSIATLGKNDTYLKDTIFKALSTTAAVPAAL---SgaGTAQDAKFSIIFPDAETIRASLDGYTSGSSIHMKVQSWIHQQQL 627
                      3344489******************************9444322...133667889999*********************************** PP

                      HHHHTS--EEEE-TT.............TTTTT--B--EEEEEE.--STTSEESEEEEES--BSHHHH--S.....SS--SSBEEEEEEEGG.. CS
  Tyr-DNA_phospho 319 eelkpylckwkqdse...........eeagRkraapHiKtyirf.ssktlkkidWalltSaNLSkqAWGelekakeelrirsyElGVlvlpk.. 398
                      +++++ lc+w+  +            ++a R+raapHiKtyirf +s+++++idWa++tSaNLS+qAWG+++++++e+r++syE+GV+v+p+  
       KKY17466.1 628 QYMRRHLCHWAPPRGngyppstsaaqRSALRQRAAPHIKTYIRFtDSEKMDEIDWAMITSANLSTQAWGTAVTSNGEVRVQSYEIGVVVWPDlf 721
                      ************8779**********99****************99999*******************************************99 PP

                      ...........................................------SEEESS-SSEEE-- CS
  Tyr-DNA_phospho 399 .....................kdlpee................eektevgvrvPydlplepYs 424
                                                +                +e+  vg+r+Pydlpl++Ys
       KKY17466.1 722 qheqddtgptspaqvsqtgtkV----KmiptfgtdypmqtncdNEESIVGLRMPYDLPLVKYS 780
                      9988877777776666555550....15555555666668899999****************6 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.6   1.8e-11   8.3e-08       5     203 ..      58     239 ..      54     240 .. 0.56

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 1.8e-11
                  EEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHH.TSEEEEEC-TTS..................CHHHHHHH CS
  Metallophos   5 vigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaalvky.pipvylllGNHe..................gfeeelln 83 
                  +i+D+H               +++++ +  dl+++aGDl + g +++ + +++++l ++ +++++++ GNH+                    ++ + +
   KKY17466.1  58 CISDTH---------------SKTASIPSGDLLIHAGDLANAGTVSE-ITKQIDWLSSLpHTHKIFICGNHDgafdprarcivdrnsttdLAHYASAR 139
                  555555...............223333578*************9999.9999999999866777********75554444433333322211112222 PP

                  HHHHHHHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESECEEETHHHHHHHHHHHSCHHHHCC...........HHHHHHHHHHTTCSEEEEEESSE CS
  Metallophos  84 kygylgifsepwrsdaevfnnlplaslgsgslkvlllhGgspellvsldklgslnleleapepg...........dewlkdlekrekadwvivlgHsp 170
                  +  yl + s +++                               ++s  +l+ +  ++ ++ +g           d w        ++d++++++H p
   KKY17466.1 140 SIHYLQHSSVTIKFA-----------------------------SHSDRQLKIYGAPQIPACGGadmafqyprgsDAWTG----TVPRDTDVLITHTP 204
                  222222221111111.............................222222222222222222223333332223255555....5************* PP

                  SS..CSSSCSCCHHHHHHHHHHTTESEEEEESSSS CS
  Metallophos 171 ly..rgsgylfgdealedllkkygvdlvisGHtHv 203
                  +      ++ +gde l     + ++ l ++GH+H 
   KKY17466.1 205 PKwhHDLSHGMGDEFLLQEVWRVKPLLHVFGHVHA 239
                  **997777777777777333344567789*****5 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.4   1.6e-07    0.0007       2     129 ..      55     239 ..      54     252 .. 0.57
   2 ?   -0.6   0.0      0.31   1.4e+03      45      76 ..     443     479 ..     417     546 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.6e-07
  Metallophos_2   2 klaiiSDlHsnldaleavlealkevgvdaiihaGDl.eeeep....evleellela..pvlaVrGNnD............................ 62 
                    k++ iSD+Hs    ++ ++    +   d++ihaGDl ++++     + +++l +l     + ++GN+D                            
     KKY17466.1  55 KVICISDTHS---KTASIP----SG--DLLIHAGDLaNAGTVseitKQIDWLSSLPhtHKIFICGNHDgafdprarcivdrnsttdlahyasarsi 141
                    8999*****4...444444....45..9*******953333322222444444444988899******9999999999977665555555544433 PP

  Metallophos_2  63 .....eevveedvlreaaelgtdl...................................peeaelel..agekvlliHgdplgvkdalaellke.. 114
                         +                                                      ++a+     ++++vl++H  p +++++l++ + +  
     KKY17466.1 142 hylqhS-----------------SvtikfashsdrqlkiygapqipacggadmafqyprGSDAWTGTvpRDTDVLITHTPP-KWHHDLSHGMGDef 219
                    333320.................1333333333333444555555554444444444332222222134555588888875.55555555444444 PP

  Metallophos_2 115 ....aeegsd.vvvcGHtHv 129
                         + ++  + v+GH H 
     KKY17466.1 220 llqeVWRVKPlLHVFGHVHA 239
                    44434455557889999996 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.31
  Metallophos_2  45 leellelapvlaVrGNnD....eev..veedvlreaae 76 
                      +++++ +v++V+G +     +    ++++++r+++ 
     KKY17466.1 443 DSDVRDIVQVKIVHGSWKkeasN-RiaIDDACQRRPNV 479
                    55677778999999999966642.13456666665543 PP

>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       0.2   8.9e+02      39      76 ..     120     155 ..     117     164 .. 0.80
   2 !    4.3   0.1    0.0076        34      19     100 ..     433     515 ..     424     527 .. 0.65
   3 !   10.7   0.0   8.2e-05      0.37      82     108 ..     663     708 ..     586     726 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.2
      PLDc_2  39 vrilldskkddagavdeaslkelkellleagvevrvfe 76 
                  r ++d+ +++ ++  +as++ ++ l +++ v +++  
  KKY17466.1 120 ARCIVDR-NSTTDLAHYASARSIHYL-QHSSVTIKFAS 155
                 5789998.556788899*********.****9999754 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0076
      PLDc_2  19 fvsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfetllgslHaKlylidgk....tvivGSsN 100
                 f   ++++ ++  + +  v+v+i+ +s+k+  ++++ a    +++ +  + +  ++ ++ +g+ H+K+++  ++     v++ +sN
  KKY17466.1 433 F-DIDWLMTHFDSDVRDIVQVKIVHGSWKK-EASNRIAIDDACQRRPNVKAITAYLPDP-FGTHHSKMMILIRHddfvQVVIHTSN 515
                 5.55556666666777789*******9876.4666778888888886666666555444.4778****998433345534444455 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 8.2e-05
      PLDc_2  82 lHaKlyli..dgk.......tvivGSsNltkrgl...........dl 108
                  H K+y+   d +       +++++S+Nl+++++            +
  KKY17466.1 663 PHIKTYIRftD-SekmdeidWAMITSANLSTQAWgtavtsngevrVQ 708
                 48888887433.24777888**************9888444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (807 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 5484.11
//
Query:       KKY17467.1  [L=625]
Description: putative serine protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-42  145.9   0.2    1.1e-22   80.7   0.1    2.3  2  Pkinase         Protein kinase domain
    8.9e-15   54.7   0.3    5.8e-10   38.9   0.1    2.4  2  Pkinase_Tyr     Protein tyrosine kinase
     0.0069   15.2   0.0      0.017   13.9   0.0    1.7  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.1   1.8e-26   1.1e-22       1     132 [.     131     273 ..     131     284 .. 0.86
   2 !   63.1   0.0   4.3e-21   2.6e-17     136     264 .]     429     593 ..     420     593 .. 0.87

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 1.8e-26
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.....CT...TB--EEEEEEE....SSEEEEEEE--TTEBHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.....hp...nivrlyevfee....kdelylvleyveggelad 87 
                 y++++klG G f++V   +++++gk+vA+K+++         ++++ Eik+l+k+      hp   ++v l+++fe+      ++++v+e++ ++ l  
  KKY17467.1 131 YVVVRKLGWGHFSTVWLSRDTTNGKHVALKVVRSAAHYT---ETAIDEIKLLQKIVqakpdHPgrkHVVSLLDSFEHkgpnGLHVCMVFEVLGEN-LLG 225
                 67899***************************9987776...568*******998555566533339*********988777899******9966.777 PP

                 HHH..HHSS--HHHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEE CS
     Pkinase  88 lle..rkgslseeeakkiakqilegleylH.skgiiHrDlKpeNiLid 132
                 l++  +++ +++e +k+i+kq+l gl+ylH + giiH DlKpeN+Li+
  KKY17467.1 226 LIKrwNHRGIPMELVKQITKQVLLGLDYLHrECGIIHTDLKPENVLIE 273
                 777688889*********************6667*************8 PP

  == domain 2  score: 63.1 bits;  conditional E-value: 4.3e-21
                 E...EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT....SHH... CS
     Pkinase 136 e...lKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg....etkekl 227
                 +   +Ki+D+G a+ ++++  +t+ + t++Y++PEv+ + + ++++DvWs++++++el+tg  +f  ++g++ + k+ d++ +i+++lg       ++ 
  KKY17467.1 429 QiisVKIADLGNACWVNHH--FTNDIQTRQYRSPEVILGAKWGASTDVWSMACMVFELITGDYLFDPQSGTK-YGKDDDHIAQIIELLGafpkSLCLSG 524
                 24449*********99995..799******************************************666665.88888888999999998875333444 PP

                 HHHTTS................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 228 peasei................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 ++ +ei                                 +++ d+l+ +l+  p+kR  a  + +h ++
  KKY17467.1 525 KWSQEIfnrkgelrnihrlrhwalpdvlrekyhfnvedAKKISDFLSPMLELLPEKRANAGGMSNHAFM 593
                 4455558888999************************************************99999986 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.1   9.6e-14   5.8e-10       4     144 ..     134     280 ..     131     303 .. 0.82
   2 !   13.6   0.0   5.1e-06      0.03     142     202 ..     433     487 ..     405     501 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 9.6e-14
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-....B...TTB--EEEEEESSSS....EEEEEE--TTEBHH CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.k....h...pnivkllgvctkeep....llivteyvkgGdLl 89 
                   +klG G+f++V+  + +    ++  +Va+K++++ a+ +  e  ++e+k+++k+ +    h   +++v+ll    +++p    +++v+e + + +Ll
   KKY17467.1 134 VRKLGWGHFSTVWLSRDT----TNGKHVALKVVRSAAHYT--ETAIDEIKLLQKIvQakpdHpgrKHVVSLLDSFEHKGPnglhVCMVFEVLGE-NLL 224
                  689**********99887....88999******7776666..7889999999987653333333369*********888888779999998765.788 PP

                  HHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT.EEEST-SGGGEEEEETTEEEE CS
  Pkinase_Tyr  90 kfLrkkekekltlkdllsfalqvAkGmeyLeskk.lvHrdlaarNvLlsenkvvki 144
                    +++ +++ + ++ + +++ qv  G++yL+++  ++H dl   NvL++ ++v +i
   KKY17467.1 225 GLIKRWNHRGIPMELVKQITKQVLLGLDYLHRECgIIHTDLKPENVLIEIGDVEQI 280
                  88888889**********************987549************98665554 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 5.1e-06
                  EEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTS CS
  Pkinase_Tyr 142 vkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlg 202
                  vki+D G a  +      ++ ++     ++ +pE++   k   ++DvWs + +++E++t g
   KKY17467.1 433 VKIADLGNACWV-----NHHFTNDIQTRQYRSPEVILGAKWGASTDVWSMACMVFELIT-G 487
                  788888888777.....33334455566899**************************99.5 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.9e-06     0.017     281     342 ..      92     287 ..       5     308 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.9e-06
  Pkinase_fungal 281 r.............................................................................................. 281
                     +                                                                                              
      KKY17467.1  92 Sssldepgaeptgdeedsedyckggyhpvqvgetynngkyvvvrklgwghfstvwlsrdttngkhvalkvvrsaahytetaideikllqkivqak 186
                     02223334444555555667777777777777777777788888888888888888888888888888888888888888888888888888888 PP

  Pkinase_fungal 282 ...................lenrvhrrlvispvGkpi.......ekaespkelleal.rDaIkghrsLflkagiLHrDiSenNilit........ 341
                                          n +h+++v++  G+ +       ++ + p el++ + ++++ g+  L++++gi+H D   +N+li         
      KKY17467.1 187 pdhpgrkhvvslldsfehkGPNGLHVCMVFEVLGENLlglikrwNHRGIPMELVKQItKQVLLGLDYLHRECGIIHTDLKPENVLIEigdveqiv 281
                     888888889999999888844889999999999988644443334566678888876257899***********************977777777 PP

  Pkinase_fungal 342 .....d 342
                          +
      KKY17467.1 282 ktfvkE 287
                     777762 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1059  (0.0590663); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.50
# Mc/sec: 3769.47
//
Query:       KKY17468.1  [L=758]
Description: putative plasma membrane channel protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.3e-117  391.4   2.2   6.7e-117  391.1   2.2    1.1  1  Anoctamin      Calcium-activated chloride channel
  ------ inclusion threshold ------
       0.19   11.6   0.0       0.39   10.6   0.0    1.4  1  DAHP_snth_FXD  DAHP synthase ferredoxin-like domain


Domain annotation for each model (and alignments):
>> Anoctamin  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  391.1   2.2  7.4e-121  6.7e-117       2     445 ..     192     660 ..     191     664 .. 0.90

  Alignments for each domain:
  == domain 1  score: 391.1 bits;  conditional E-value: 7.4e-121
   Anoctamin   2 rdyFGekiAlYFawlgfytsallppavlGlllflyglatitlfdneltvvfalfmviWatlflelWkrreaelaykWgtsdfeeeeeprpefrgelkre 100
                 rd  Gek+A+YFa+l+ y+ +ll+pa++Gl+ +        l   +++ v+++++++W+++f+e+Wkr+e++la++Wg++++++   +r+ef +e++ +
  KKY17468.1 192 RDRLGEKVAYYFAFLQSYFAFLLFPAAFGLCSWAL------LG--HYSAVYGIVNSLWCVVFVEWWKRQERDLALRWGVRNVSQYSSKRKEFSHEKEVN 282
                 8999*****************************95......22..499***********************************9999********9988 PP

   Anoctamin 101 spvtgeeefyyppwkrrlfrllvslplvllliclavvgvlilrclalqelvssvke..lls....flptvlnlvlililnevykklaiwltdlEnhrtq 193
                 +p+tg++  ++p +k rl r+++++p++  ++++  +g li +c+ +++++s+v++  l +    f+pt l+ v+++ ++ + +++a++l+d+En++t 
  KKY17468.1 283 DPITGQTLRMFPAKK-RLLRQVLQIPFT--ILAVGALGALIAACFGIEIFISEVYDgpL-KsvlvFIPTGLLTVFVPTISTILTNVATKLNDYENYETR 377
                 8************99.8888999***99..7788999999999*************961.34566********************************** PP

   Anoctamin 194 seyekslilKvflfqfvnsylslfyiaFvkgkflkypgkylr...............rseecdeegcleelkeqLaiilvtkqllnnilevllPylkek 277
                 ++ye +++ K+f+++f++syl++f++aFv+++f++++ +yl+                    + e+++ +l++q+++++vt q++n+++e+++P+lk+k
  KKY17468.1 378 ESYEMAMTQKIFVLNFITSYLPIFLTAFVYVPFAGHIVPYLDifsltvkpfathekqMAPPKEFEINPARLRKQVIYFTVTAQVVNFAMETIVPLLKQK 476
                 *****************************************************98765556788999***************************99776 PP

   Anoctamin 278 lkk.....kkk..........esekdekeeeeskkltqaekeyelkkyedlfddYlemviqfGyvtlFsaafPlapllallnniieirldafklvtelr 361
                  ++     + +           s+++ +  ee+++lt+++ ++el++y+ ++ d  em++qfGy++lFs+++Pl+p+ +l+nn+ie+r+dafk+  e++
  KKY17468.1 477 GTTkfkqmQ-SeraakhggaaPSASSTDPAEEKTFLTRVRAQAELDPYD-VTADLREMCVQFGYLSLFSVVWPLVPVSFLINNWIELRSDAFKIALEHQ 573
                 655444441.145666788886666666668999**************7.89*********************************************** PP

   Anoctamin 362 RpvperaesiGiWqkilealgvlavitnallialtsd..pek..dteqylsvlaarlafvvvlehvvlllkyliavlipdi.pkwvkee 445
                 Rp+p ra+siG+W++ l +l++l+ it a+l+ ++s+    +   t   ++ +a +l++++  eh++l++++ +a +i++i + +++++
  KKY17468.1 574 RPTPARADSIGPWLDTLGFLSWLGSITSAALVYMFSNdgL-GpdGTPSAIKGWALLLTIFF-SEHIYLVVRVAVALIISKIdSPDMQKD 660
                 ********************************99986441.14667778999*******99.******************964445554 PP

>> DAHP_snth_FXD  DAHP synthase ferredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.3e-05      0.39      11      39 ..      51      79 ..      44      82 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.3e-05
  DAHP_snth_FXD 11 eeqieevierieelGlkvhvskGeertVi 39
                    +q e++i+ + e Gl+++v +Ge++t +
     KKY17468.1 51 TAQFEKLIQSLAEVGLQTEVRNGENHTLL 79
                   5799**********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.51
# Mc/sec: 4440.43
//
Query:       KKY17469.1  [L=2042]
Description: putative dead deah box [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.3e-129  429.2   0.0    9.4e-82  274.0   0.0    2.3  2  Sec63         Sec63 Brl domain
    2.1e-51  174.2   0.4    1.4e-26   93.3   0.6    2.8  3  DEAD          DEAD/DEAH box helicase
      2e-21   76.7   0.0    1.9e-10   41.0   0.0    2.4  2  ResIII        Type III restriction enzyme, res subunit
    9.7e-15   54.9   0.0    1.1e-06   29.0   0.0    3.7  2  Helicase_C    Helicase conserved C-terminal domain
    9.2e-08   32.5   0.8     0.0027   18.0   0.0    3.5  2  AAA_22        AAA domain
    4.9e-06   26.4   0.1      0.038   13.7   0.1    2.4  2  AAA_30        AAA domain
    1.1e-05   25.9   1.5     0.0014   19.0   0.6    3.0  3  AAA_19        AAA domain
    7.9e-05   22.8   0.0    0.00021   21.4   0.0    1.7  1  Helicase_PWI  N-terminal helicase PWI domain
  ------ inclusion threshold ------
      0.056   13.2   0.0         17    5.1   0.0    3.3  3  IstB_IS21     IstB-like ATP binding protein
        0.1   12.0   1.2         14    5.0   0.1    3.7  4  TniB          Bacterial TniB protein


Domain annotation for each model (and alignments):
>> Sec63  Sec63 Brl domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.0   0.0   5.3e-85   9.4e-82       2     256 ..     788    1092 ..     787    1093 .. 0.98
   2 !  152.9   0.0   4.8e-48   8.5e-45       1     253 [.    1633    1990 ..    1633    1992 .. 0.86

  Alignments for each domain:
  == domain 1  score: 274.0 bits;  conditional E-value: 5.3e-85
                  CHHHHHHHHHT--HHHHHHHHHHS-TT--HHHHHHHHHTSGGGGGS---TTHHHHHHHHH.HTSSS--SSSTTSHHHHHHHHHHHHHTT---SSHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63    2 telGriaShYyisyetiklfneslkpnttlkdlLeilssasEFeeipvReeEkkelkkLl.ekvpikvkediespeaKvniLlqayisrlklegsdl 97  
                  +++GriaS+Yy+  ++i++fn++++p+ t++d+L+++s++ EF++i+ Re+E kel +L+ e v+++v+++ ++p+aK+niLlq+yisr +le+++l
  KKY17469.1  788 KDVGRIASQYYVLQTSIEIFNTMMRPRATEADVLKMISMSGEFDNIQSRENEAKELGRLKdEVVKCEVEGEKDTPHAKTNILLQSYISRARLEDFAL 884 
                  689*********************************************************6669********************************* PP

                  HHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS-TT................................................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................. RF
       Sec63   98 vsDlkyilqnairilralveillskgwlslalslleLskmveqrlwds................................................. 145 
                  vsD +y++qna ri+ral+ i+l++gw   +l ll+++k +e+++w++                                                 
  KKY17469.1  885 VSDSAYVAQNAARICRALFMIALNRGWGYQCLVLLSMCKAIEKQIWPFehpfhqfdlpqpvlrnldskypassveglrdmepaemgslvhnnrmgtt 981 
                  **********************************************999************************************************ PP

                  .......S--EEEEEEECEBTTSEEEEEEEEEESSSS-SCTSSS-CH..TSBEEEEEEEEETTTTEEEEEEEEEESSTTTTTEEEEEEEEEEE-.SS CS
                  .......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63  146 .......lPkleieaevqpitrsklrvevtiereeeeskpdfpwdkk..gksekfwlvvedsendellaikrvtlekkklastqevkleftvplsep 233 
                         +P+l++eae+ p+ r++lr+++ +        p+f w+++  g se+ w++ve+se++e++++++++l+kkk++  ++++l+ft+pls+p
  KKY17469.1  982 lsklldnFPTLSVEAEIAPLNRDVLRMKLYLY-------PEFSWNDRhhGISESYWIWVENSETSEIYHHEYFILSKKKIN--DNHELNFTIPLSDP 1069
                  ********************************.......************************************998777..5999********** PP

                  CCEEEEEEEEESSSSS-EEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63  234 gpkqltvrlisdswlgldqevti 256 
                  +p+q++vr++sd+wlg+++ +++
  KKY17469.1 1070 LPSQIYVRAVSDRWLGAETVFPV 1092
                  ******************99887 PP

  == domain 2  score: 152.9 bits;  conditional E-value: 4.8e-48
                  ECHHHHHHHHHT--HHHHHHHHHHS-..TT--HHHHHHHHHTSGGGGGS---TTHHHHHHHHHHTSSS--.........S.SSTTSHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........x.xxxxxxxxxxxxxxxx RF
       Sec63    1 ptelGriaShYyisyetiklfneslk..pnttlkdlLeilssasEFeeipvReeEkkelkkLlekvpikv.........k.ediespeaKvniLlqa 85  
                  pt  G+i+S+Yy+s+ ti+l+ ++++  p+ t k++L  +s asEF+e+pvR++E+  +++L++++pi++         +   + +p++K+++Llqa
  KKY17469.1 1633 PTPFGKIMSYYYLSHLTIRLLLSKVSstPQPTFKEILAWVSLASEFDELPVRHNEDLVNAELAKNLPIHLdtasdadllDgLPMWDPHVKAFLLLQA 1729
                  7999*******************99844666***************************************999999887358899************ PP

                  HHTT---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS-TT..................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................... RF
       Sec63   86 yisrlklegsdlvsDlkyilqnairilralveillskgwlslalslleLskmveqrlwds..................................... 145 
                  ++sr++l+ sd+v D +++l++ iri++a ++++++ g+l++++++l+L ++v++++w+                                      
  KKY17469.1 1730 HFSRIDLPISDYVGDSNSVLDQSIRIIQAGIDVMAELGNLTALQHMLKLLQSVKSARWPEdhpisilpgidpeahiprsqpqdlisltnipppqlss 1826
                  **********************************************************888************************************ PP

                  .......................S--EEEEEEECEBTTSEEE.EEEEEEESSS...S-S.......CTSSS-CHTSBEEEEEEEE........ETTT CS
                  .......................xxxxxxxxxxxxxxxxxxx.xxxxxxxxxx...xxx.......xxxxxxxxxxxxxxxxxxx........xxxx RF
       Sec63  146 .......................lPkleieaevqpitrsklr.vevtiereee...esk.......pdfpwdkkgksekfwlvve........dsen 200 
                                         lPkl    ++qp t+s++  ++  ++r ++   + +       p++p+ +   +e+f+++          +s n
  KKY17469.1 1827 flsstlpntqnqtskslreailtLPKLGF-SDLQPSTNSSSAsLTFILSRLNRpstS-NpeihiyaPRYPKPQ---TEGFFVLATtittttssSSAN 1918
                  **************************999.788888887665489999988887641.257899*********...888887765555666668999 PP

                  TEEEEEEEEEESSTTTTTEEEEE.........EEEEEE-.SS..........CCEEEEEEEEESSSSS-EEE CS
                  xxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxx RF
       Sec63  201 dellaikrvtlekkklastqevk.........leftvplsep..........gpkqltvrlisdswlgldqe 253 
                  +ella+krv    k ++s  +++         +++++p++ +              ++v+lisds+ g++ +
  KKY17469.1 1919 EELLALKRVNWPSKPTSSHPSHSssqssistkITLNIPPPPSppatttnttdITLRIKVQLISDSYPGMQWT 1990
                  ********8885544444222225566777774444443322346666555578889999******999865 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.6   7.8e-30   1.4e-26       3     172 ..     277     461 ..     275     465 .. 0.88
   2 ?   -4.2   0.0       6.9   1.2e+04     154     169 ..     608     621 ..     600     622 .. 0.67
   3 !   77.4   0.0     6e-25   1.1e-21       2     169 ..    1138    1303 ..    1137    1309 .. 0.85

  Alignments for each domain:
  == domain 1  score: 93.3 bits;  conditional E-value: 7.8e-30
                 HHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHS...............TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTS CS
                 xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplil.gggdvlvaaeTGsGKTlaflipvlqivyet...............kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggv 85 
                 +Q+  +p ++ + +++l++a+TG+GKT a+++ +l++++++                + +  k+++v+P+++La ++ ++l k+++ ++++v  + g+ 
  KKY17469.1 277 MQSLLYPVAYrTTENMLICAPTGAGKTDAAMLTILHTISKNivpdpideleatefaVNLNDFKIVYVAPMKALAAEVTEKLGKRLQWLGIQVRELSGDM 375
                 67777888885668************************999***99999999988878999**************************999998665644 PP

                 SHHHHHHHHHTTCSEEEEEHHHHHHHH..HCTSSH.CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  86 aardqlskldngvdivvgtpgrlddll..stgkln.lsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkd 172
                 +    ++++ + ++i+v+tp+++d ++  stg  + +++vr+l++DE+++l d+ ++  +++++++++++ +++++  +++ lSATlp+ 
  KKY17469.1 376 Q--LTKKEI-SATQIIVTTPEKWDVVTrkSTGDTElVQKVRLLIIDEIHMLHDE-RGAVLESLVARTERQVESTQSLIRIVGLSATLPNY 461
                 3..456666.779***********9888877777779****************9.************999999987789********954 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 6.9
                 TTSTTTSEEEEEESSB CS
                 xxxxxxxxxxxxxxxx RF
        DEAD 154 cdgklqrqvivlSATl 169
                 ++g l  +v++++ATl
  KKY17469.1 608 SEGAL--RVLCCTATL 621
                 44444..49******8 PP

  == domain 3  score: 77.4 bits;  conditional E-value: 6e-25
                  HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHHHT CS
                  xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD    2 diQaeaiplil.gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskldn 96  
                  ++Q +++++++ + ++vl+  +TGsGKT a+ + +  ++   ++++g k+++++P+++L+++ +++++ ++   ++l+++ ++g +++  + +++ +
  KKY17469.1 1138 PMQTQIFHTMYhTSENVLLGSPTGSGKTIAAELSMWWAF---RERPGSKVVYIAPMKALVRERVQDWRARLTRqMGLKLVELTG-DNT-PDTRTI-R 1228
                  789999999996668*********************888...68************************9999768899885555.555.466777.7 PP

                  TCSEEEEEHHHHHHHH....HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSE.EEEEESSB CS
                  xxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
        DEAD   97 gvdivvgtpgrlddll....stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrq.vivlSATl 169 
                  ++di+++tp+++d +     ++g+  ++qv+++++DE++ l  + +++ ++ i+++++ i ++ +++ + v + +A +
  KKY17469.1 1229 DADIIITTPEKWDGISrswqTRGY--VRQVSLVIIDEIHLLGGD-RGPILEIIVSRMNYIASQSENSVRlVGMSTACA 1303
                  9*************9977543444..*****************8.***************999998888344445544 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   2.8e-11     5e-08      22     170 ..     287     459 ..     261     460 .. 0.82
   2 !   41.0   0.0   1.1e-13   1.9e-10      22     156 ..    1149    1288 ..    1118    1303 .. 0.79

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 2.8e-11
                 .TTSEEEEEESTTSTHHHHHHHHHHHH-S.......................-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--...... CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierllkkgkee..................kflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdst 102
                 +  +++li ++TG+GKT  a+ +i +  +k+                     k++ ++p k+l     e++ k l+     +  ++sgd +   +k+++
  KKY17469.1 287 RTTENMLICAPTGAGKTDAAMLTILHTISKNIVPdpideleatefavnlndfKIVYVAPMKALAAEVTEKLGKRLQWLG-IQVRELSGDMQLT-KKEIS 383
                 5567899***************9999999987779******************************99999988887653.4788899999999.9999* PP

                 .-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS......T.....TTHHHHHT---SEEEEEESS-S CS
      ResIII 103 nkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak.....k.....swreilekfkeavllglTATpe 170
                  ++i+vtt ++ d     ++++ ++ l ++  ++iiDE H l+++     +     + r++    +   ++gl+AT++
  KKY17469.1 384 ATQIIVTTPEKWDVVT--RKSTGDTELVQKVRLLIIDEIHMLHDErgavlEslvarTERQVESTQSLIRIVGLSATLP 459
                 *************999..44556666777788************86555515566466667777677999******86 PP

  == domain 2  score: 41.0 bits;  conditional E-value: 1.1e-13
                  .TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH CS
      ResIII   22 krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldads 118 
                  +  +++l+  +TG+GKT+ a   ++  +++++ +k++ ++p k+l+    ++++  l  +   +  +++gd+     + + +++i++tt ++ d +s
  KKY17469.1 1149 HTSENVLLGSPTGSGKTIAAELSMWWAFRERPGSKVVYIAPMKALVRERVQDWRARLTRQMGLKLVELTGDNTPD-TRTIRDADIIITTPEKWDGIS 1244
                  677899**************77777777778999*******************9999998655777789999888.9999***************** PP

                  ........HHHTTT-SEEEEETGGGTTS..........TTTHHHHHT CS
      ResIII  119 eeeeeeseellrdrfdviiiDEaHrlgak.........kswreilek 156 
                     ++++++    +  ++iiDE H lg++         + ++ i+ +
  KKY17469.1 1245 ---RSWQTRGYVRQVSLVIIDEIHLLGGDrgpileiivSRMNYIASQ 1288
                  ...8899999999999********99997544443333355555444 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.6e-07   0.00028      14     109 ..     521     664 ..     511     666 .. 0.63
   2 !   29.0   0.0     6e-10   1.1e-06      33     109 ..    1418    1504 ..    1356    1506 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.6e-07
                 TTTSEEEEEESSHH....HH..............HHHHHH..................HHHT........TSTEEEESTTSTHHHHHHHHHHHHTTSSS CS
  Helicase_C  14 eeggkilifvntid....rl..............ekvkll..................lekk........gikvavlhgelpqnereeileqfnkgesd 68 
                 e+g+++++fv++++    ++                   +                  +  +           + ++++ +  ++r+ i + f +g  +
  KKY17469.1 521 ERGHQVMVFVHSRKdtvlTArmilqmaadqqcedL----FvpdpqspayktamadlknT--RgrelrdliPRGIGTHNAGMARSDRNLIERLFSEGALR 613
                 66777777777777543311333333333333220....23333333333333333220..1333444555677889999******************* PP

                 EEEESGGGTSSSTSTTESEEE....ESSSSSSH........HHHHHHHTTSSS CS
  Helicase_C  69 vLiatdvaerGidipkvnlVi....nfdlprnv........tsyiqriGRtgR 109
                 vL +t  ++ G+++p + +Vi     ++++            ++ q  GR+gR
  KKY17469.1 614 VLCCTATLAWGVNLPAAAVVIkgtqLYSAQ--EgkfvdlgiLDVLQIFGRAGR 664
                 *********************555444444..033445555999*******99 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 6e-10
                  HHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEE....ESSSS......SSHHHHHHHHTTSSS CS
  Helicase_C   33 klllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVi....nfdlp......rnvtsyiqriGRtgR 109 
                  + l+e  ++ +  +h+ l  ++r+ + + f ++++++L+at+ ++ G+++p   +V+    +fd++       ++t++ q+ GR+gR
  KKY17469.1 1418 SALREALNFGIGLHHAGLVESDRQLAEQLFANNKIQILVATSTLAWGVNLPAHLVVVkgtqFFDAKiegykdMDLTDVLQMLGRAGR 1504
                  233444499999***************************************666666666666666777655557************ PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   1.3   0.00091       1.6       7     117 ..     291     439 ..     286     452 .. 0.60
   2 !   18.0   0.0   1.5e-06    0.0027      13     130 ..    1159    1298 ..    1149    1303 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00091
      AAA_22   7 ilvvtGesGtGKT.tllrrlleqldeeakaee.......................erpevvfvtlpsst..sskdl.lrellralglelkaerlsseel 78 
                  +++++++G+GKT   + ++l++  + + ++                        +++  ++vt + ++   +  +  rel  +++l +k+  +++  +
  KKY17469.1 291 NMLICAPTGAGKTdAAMLTILHTISKNIVPDPideleatefavnlndfkivyvapMKALAAEVTEKLGKrlQWLGIqVRELSGDMQLTKKEISATQIIV 389
                 678999999999943445555555444444438887766666666554444443333333344444444455555555555555555444444444444 PP

      AAA_22  79 l.ealeqalrarav........ielliiDEaqhlr..seealeeLrslln 117
                      ++ + ++++        ++lliiDE++ l   + ++le L+ + +
  KKY17469.1 390 TtPEKWDVVTRKSTgdtelvqkVRLLIIDEIHMLHdeRGAVLESLVARTE 439
                 446666666666667778888889**********6655999998876654 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1.5e-06
      AAA_22   13 esGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst...sskdllrellralglelka....................erlsseellealeqal 86  
                  ++G+GKT  ++  + ++    + e+++++vv++ + +       +d + +l r++gl+l +                     + + + + +  +   
  KKY17469.1 1159 PTGSGKTIAAELSMWWA----FRERPGSKVVYIAPMKALvreRVQDWRARLTRQMGLKLVEltgdntpdtrtirdadiiitTPEKWDGISRSWQTRG 1251
                  89*****9998888886....77778888885555554455499999**************999999999999888888865555555556666666 PP

      AAA_22   87 raravielliiDEaqhlr..seealeeLrsllnl..srkgvqliLvGt 130 
                    r+v +l+iiDE++ l   +  +le ++s++n   s++  ++ LvG+
  KKY17469.1 1252 YVRQV-SLVIIDEIHLLGgdRGPILEIIVSRMNYiaSQSENSVRLVGM 1298
                  66666.9**********7766*************99888888888887 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   2.1e-05     0.038      20     112 ..     291     435 ..     273     453 .. 0.69
   2 !   10.2   0.0   0.00025      0.45       3     101 ..    1137    1268 ..    1136    1297 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.1e-05
      AAA_30  20 vavltGpAGtGKtta.lkalreaweaag...................grviglAptgkaAkvLaeelg.......ieastiakllkrlk.......... 81 
                  +++ +p G+GKt a + ++ +++ ++                    ++++ +Ap ++ A++++e+lg       i+ + +   +   +          
  KKY17469.1 291 NMLICAPTGAGKTDAaMLTILHTISKNIvpdpideleatefavnlndFKIVYVAPMKALAAEVTEKLGkrlqwlgIQVRELSGDM---Qltkkeisatq 386
                 578999*******651334444444442579999******************************977733333223333333332...14446777777 PP

      AAA_30  82 ..................grarlepg.tllivDEagmvdtkqlaallkaa 112
                                   + ++l ++ +lli+DE+ m+  +  a l + +
  KKY17469.1 387 iivttpekwdvvtrkstgD-TELVQKvRLLIIDEIHMLHDERGAVLESLV 435
                 99999999999*99***64.5566666**********9665544444443 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00025
      AAA_30    3 naeQaaavealltsgdrvavltGpAGtGKttalkal.reaweaa.ggrviglAptgkaAkv.La...............eelgieastiakllkrlk 81  
                  n+ Q +++ ++ ++++  ++l  p G+GKt a +     a++++ g +v+ +Ap ++  ++ ++               e   +            +
  KKY17469.1 1137 NPMQTQIFHTMYHTSE-NVLLGSPTGSGKTIAAELSmWWAFRERpGSKVVYIAPMKALVRErVQdwrarltrqmglklvE---L------------T 1217
                  6789999998888886.67788899*****9987664555666669*********9998875774444444333332221...1............0 PP

      AAA_30   82 ...............................grarlepgtllivDEagmvd 101 
                                                  r  +++ +l+i+DE+ +++
  KKY17469.1 1218 gdntpdtrtirdadiiittpekwdgisrswqTRGYVRQVSLVIIDEIHLLG 1268
                  2222222333334444456677778888985333455559*****998775 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.6   7.9e-07    0.0014       9     129 ..     288     438 ..     283     453 .. 0.73
   2 ?   -3.4   0.0         6   1.1e+04      65      84 ..     763     782 ..     755     840 .. 0.72
   3 ?    4.3   0.0     0.026        46       7     111 ..    1148    1264 ..    1140    1285 .. 0.57

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 7.9e-07
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelggvkp................eeillvaftgrAakelrerlaalgae...............atTiHrla 76 
                 + +++l+ a+ G GKT   +  + + ++ + v+                  +i+ va+ +  a e++e+l   g++                       
  KKY17469.1 288 TTENMLICAPTGAGKTDAAMLTILHTISKNIVPDpideleatefavnlndFKIVYVAPMKALAAEVTEKL---GKRlqwlgiqvrelsgdmQ------- 376
                 6789*************9999999999988776589999*********9999******999999999988...4444456544444444442....... PP

      AAA_19  77 lldfddlltealelle............eaeeekklqeee.llivDEfqdvdelqyrLlkallgek 129
                    +++++  a +++             ++ +++ + ++  lli+DE+ ++ +   ++l+ l+ ++
  KKY17469.1 377 ---LTKKEISATQIIVttpekwdvvtrkSTGDTELV-QKVrLLIIDEIHMLHDERGAVLESLVART 438
                 ...444443344443355555556666444445555.5555***********99999999988665 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6
      AAA_19  65 lgaeatTiHrlalldfddll 84 
                 +  +a+T+H+  ++ f++++
  KKY17469.1 763 IVNAARTLHASQMIIFNEKT 782
                 46679999999886555554 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.026
      AAA_19    7 alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae...................atTiHrlalldfddll 84  
                  +++++++l+  + G+GKT   +  + ++ +++  +  +++ +a+ +  ++   er++   a+                   ++Ti    ++ +++++
  KKY17469.1 1148 YHTSENVLLGSPTGSGKTIAAELSMWWAFRER--PGSKVVYIAPMKALVR---ERVQDWRARltrqmglklveltgdntpdTRTIRDADIIITTPEK 1239
                  7788999999999****977666666666655..6688999888765433...23322222211224444555555555555555544332222222 PP

      AAA_19   85 tealelleeaeeekklqeeellivDEf 111 
                    + ++ ++ +++  +++  l+i+DE+
  KKY17469.1 1240 --WDGISRSWQTRGYVRQVSLVIIDEI 1264
                  ..3333224445555634447777776 PP

>> Helicase_PWI  N-terminal helicase PWI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.2e-07   0.00021      14      77 ..      88     152 ..      82     180 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.2e-07
  Helicase_PWI  14 WLqrelkkiyk..DaeeaqelaeevleiLkseadelrelEnkLvelldydkfdliklllknrekiv 77 
                   WL  +++++++     +a+e ++++l +L+ + d+  el+ +L ++++++ +d++  l+k+r++iv
    KKY17469.1  88 WLAAKCRDFVQgrPGVDANEFQQQILAVLAAS-DSDDELQMSLADIIGFEDLDFVIDLIKHRKTIV 152
                   899999999886555689999***********.6669***************************98 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0094        17      45      65 ..     287     307 ..     265     318 .. 0.80
   2 ?   -0.5   0.0      0.48   8.5e+02     106     121 ..     409     424 ..     400     446 .. 0.71
   3 ?    3.2   0.0     0.037        67      45      82 ..    1149    1188 ..    1137    1213 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0094
   IstB_IS21  45 ekkenivllGpsGvGKshlai 65 
                 ++ en++++ p+G+GK+  a+
  KKY17469.1 287 RTTENMLICAPTGAGKTDAAM 307
                 689*************97665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.48
   IstB_IS21 106 llkvdllilDdlgllp 121
                 ++kv+lli+D++ +l+
  KKY17469.1 409 VQKVRLLIIDEIHMLH 424
                 6799*******97764 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.037
   IstB_IS21   45 ekkenivllGpsGvGKshlaialgveavr..aglsvlfvr 82  
                  +++en++l  p+G GK+  a      a r   g +v+++ 
  KKY17469.1 1149 HTSENVLLGSPTGSGKTIAAELSMWWAFRerPGSKVVYIA 1188
                  5789*************76654334455433577777765 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.048        87      18      50 ..     272     304 ..     265     314 .. 0.85
   2 ?    5.0   0.1     0.008        14     119     132 ..     411     424 ..     385     435 .. 0.86
   3 ?   -0.4   0.0      0.37   6.7e+02     119     132 ..    1255    1268 ..    1252    1304 .. 0.61
   4 ?   -4.0   0.0       4.7   8.4e+03     152     163 ..    1995    2006 ..    1995    2007 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.048
        TniB  18 eilerLeeLleypkrkrmpnlllvGdsnnGKtm 50 
                 + l+r+++Ll       ++n+l++ ++  GKt 
  KKY17469.1 272 KSLNRMQSLLYPVAYRTTENMLICAPTGAGKTD 304
                 568899999977777777*************96 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.008
        TniB 119 kvrvLiiDEihnll 132
                 kvr+LiiDEih l 
  KKY17469.1 411 KVRLLIIDEIHMLH 424
                 79*********875 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.37
        TniB  119 kvrvLiiDEihnll 132 
                  +v ++iiDEih l 
  KKY17469.1 1255 QVSLVIIDEIHLLG 1268
                  7899******9654 PP

  == domain 4  score: -4.0 bits;  conditional E-value: 4.7
        TniB  152 elkipivlvGte 163 
                  +l+ipi++vG +
  KKY17469.1 1995 DLDIPIIGVGDN 2006
                  589*******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2042 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.44
# Mc/sec: 13969.71
//
Query:       KKY17470.1  [L=389]
Description: putative 26s protease regulatory subunit 8 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-44  149.9   0.0    8.3e-44  149.2   0.0    1.3  1  AAA              ATPase family associated with various cellul
    5.1e-14   51.8   0.0      1e-13   50.9   0.0    1.5  1  AAA_lid_3        AAA+ lid domain
    1.5e-07   31.7   0.0    2.7e-07   30.8   0.0    1.4  1  AAA_2            AAA domain (Cdc48 subfamily)
    4.6e-07   29.9   0.0    1.2e-06   28.6   0.0    1.7  1  AAA_5            AAA domain (dynein-related subfamily)
    6.7e-07   29.8   0.0    3.9e-05   24.1   0.0    2.8  3  AAA_16           AAA ATPase domain
    1.6e-05   25.2   0.1     0.0063   16.8   0.0    2.4  2  AAA_22           AAA domain
    2.4e-05   24.2   2.2    6.4e-05   22.8   2.2    1.8  1  Prot_ATP_ID_OB   Proteasomal ATPase OB C-terminal domain
    6.7e-05   22.7   0.0    0.00013   21.8   0.0    1.4  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.001   18.8   0.0     0.0018   18.0   0.0    1.3  1  IstB_IS21        IstB-like ATP binding protein
     0.0011   19.5   0.0      0.029   14.9   0.0    2.7  2  AAA_18           AAA domain
     0.0011   18.2   0.0     0.0023   17.2   0.0    1.5  1  TIP49            TIP49 P-loop domain
     0.0019   18.4   0.0      0.004   17.3   0.0    1.6  1  AAA_33           AAA domain
     0.0055   16.6   0.0      0.015   15.1   0.0    1.8  2  AAA_3            ATPase family associated with various cellul
     0.0071   15.7   0.0      0.019   14.3   0.0    1.7  1  ATPase           KaiC
     0.0076   15.6   0.1      0.017   14.5   0.1    1.5  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
  ------ inclusion threshold ------
      0.011   15.8   0.0       0.02   14.9   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.012   15.9   0.0       0.02   15.1   0.0    1.4  1  AAA_28           AAA domain
       0.02   14.1   0.0      0.035   13.3   0.0    1.3  1  DUF815           Protein of unknown function (DUF815)
      0.022   14.5   0.0      0.092   12.4   0.0    2.0  2  Sigma54_activat  Sigma-54 interaction domain
      0.026   14.0   0.0        0.1   12.1   0.0    1.9  2  PhoH             PhoH-like protein
      0.029   13.9   0.0      0.047   13.2   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
      0.039   13.7   0.0        0.1   12.3   0.0    1.7  2  AAA_24           AAA domain
       0.04   14.3   0.0      0.069   13.5   0.0    1.4  1  RNA_helicase     RNA helicase
      0.041   13.9   0.0      0.068   13.2   0.0    1.4  1  AAA_14           AAA domain
      0.073   12.6   0.2       0.21   11.2   0.0    1.8  1  AAA_25           AAA domain
      0.085   12.5   0.1       0.31   10.7   0.1    2.0  1  Prot_ATP_OB_N    Proteasomal ATPase OB N-terminal domain
      0.089   11.9   0.0       0.15   11.1   0.0    1.2  1  Parvo_NS1        Parvovirus non-structural protein NS1
       0.15   12.1   2.6       0.46   10.6   2.6    1.8  1  HR1              Hr1 repeat
       0.16   11.2   0.0       0.28   10.4   0.0    1.4  1  Zeta_toxin       Zeta toxin
       0.19   12.0   0.1       0.35   11.1   0.1    1.4  1  DUF2072          Zn-ribbon containing protein


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.2   0.0   1.4e-46   8.3e-44       1     131 [.     169     301 ..     169     302 .. 0.97

  Alignments for each domain:
  == domain 1  score: 149.2 bits;  conditional E-value: 1.4e-46
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 vllyGppGtGKTlla+ava++++ +f+++sgsel++ky+ge+++ +relf  a+e+a psi+f+DEid++++sr   s++ ++e +r++ +Ll++ldg+
  KKY17470.1 169 VLLYGPPGTGKTLLARAVAHHADCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSSRvegSSGGDSEVQRTMLELLNQLDGF 266
                 79******************************************************9.*****************98888999999************* PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 +  ++ + vi+atnr d ldpallr gR+drkie++
  KKY17470.1 267 EPTKN-IKVIMATNRLDILDPALLRpGRIDRKIEFP 301
                 **755.***************************997 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   1.7e-16     1e-13       2      44 ..     325     367 ..     324     368 .. 0.96

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 1.7e-16
   AAA_lid_3   2 vdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedfe 44 
                 ++l ++Ae+++G+SGA+l+ +c eA++ Alr+ + ++t+edf+
  KKY17470.1 325 INLTKIAEKMNGCSGAELKGVCTEAGMYALRERRVHVTQEDFD 367
                 7999*************************************95 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   4.6e-10   2.7e-07       6     105 ..     169     262 ..     165     283 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 4.6e-10
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG-------------HHHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqi 102
                 +ll gp g+Gkt+la+a+a + ++    k+ir+  sel +    + + +     ++  v a e+   i+++DEid i +++ +g+     +Vqr +L +
  KKY17470.1 169 VLLYGPPGTGKTLLARAVAHHADC----KFIRVSGSELVQ----KYIGEGSRMVRELFVMAREHApsIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLEL 259
                 5789*******************8....************....88888889999999999999999************866666677789*******9 PP

                 HH- CS
       AAA_2 103 leg 105
                 l +
  KKY17470.1 260 LNQ 262
                 964 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0     2e-09   1.2e-06       1     135 [.     168     289 ..     168     291 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 2e-09
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.G-SEEEEESGGG--.HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.egeilvlDEverae.sevlnsLlslleerrllle 97 
                 +vlL GppGtgK+ la+ +a+   +++  v +++      l++++   +++ ++v   +v a +  ++i+++DE++ +  s v +s     e +r +le
  KKY17470.1 168 GVLLYGPPGTGKTLLARAVAHHADCKFIRVSGSE------LVQKYI--GEGSRMVRELFVMAREhAPSIIFMDEIDSIGsSRVEGSSGGDSEVQRTMLE 258
                 59*************************9998875......999999..4555555555553333699***********978888888889999999999 PP

                 -SSSEEE---......-EEEEEESS--.-TT-TTHHHH CS
       AAA_5  98 eggelvkaknddllerfrviatanpldrslnelspalr 135
                  +++l +++++   +++ vi+++n+ld     l+pal+
  KKY17470.1 259 LLNQLDGFEPT---KNIKVIMATNRLD----ILDPALL 289
                 99999999994...67999****9999....6666665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   6.6e-08   3.9e-05      15      51 ..     157     193 ..     153     210 .. 0.82
   2 ?    0.9   0.0      0.91   5.4e+02     125     149 ..     216     239 ..     209     275 .. 0.66
   3 ?    0.6   0.0       1.1   6.6e+02     117     150 ..     340     372 ..     287     377 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 6.6e-08
      AAA_16  15 alervrsgrpelvllsGesGvGKsslvrellralekd 51 
                 ++e++   +p  vll+G++G+GK+ l+r++++++  +
  KKY17470.1 157 LFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHADCK 193
                 5677777899*********************987644 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.91
      AAA_16 125 rllallsrderplvlvlDdlqwade 149
                 +l++ +++ + p ++++D+++ + +
  KKY17470.1 216 ELFVMARE-HAPSIIFMDEIDSIGS 239
                 45566666.778********95443 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 1.1
      AAA_16 117 srllellkrllallsrderplvlvlDdlqwadea 150
                   l  +++++ +++ r er + ++ +d++ a + 
  KKY17470.1 340 AELKGVCTEAGMYALR-ERRVHVTQEDFDLATAK 372
                 6777888888899999.77799*******99876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.1e-05    0.0063       8      39 ..     169     191 ..     164     205 .. 0.84
   2 ?    6.1   0.0     0.021        13      78     128 ..     213     277 ..     201     285 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.1e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeer 39 
                 ++++G++GtGKT+l+r +++ +         +
  KKY17470.1 169 VLLYGPPGTGKTLLARAVAHHA---------D 191
                 689***************9988.........3 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.021
      AAA_22  78 llealeqalraravielliiDEaqhlr....s..........eealeeLrsllnl.srkgvqliLv 128
                 +++ l   +r++a  +++  DE++ +     +           ++le L +l  +  +k++++i++
  KKY17470.1 213 MVRELFVMAREHAP-SIIFMDEIDSIGssrvEgssggdsevqRTMLELLNQLDGFePTKNIKVIMA 277
                 44444455566666.9**********87655056788888989999999888888999***99986 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   2.2   1.1e-07   6.4e-05       1      50 [.      56     104 ..      56     111 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.1e-07
                     EEEEEEE-TTSSEEEEE-TTS-EEEEEE-GGGSSST--TTEEEEEETTTT CS
  Prot_ATP_ID_OB   1 VatVsEvlddteraiVktssdeevvvslagavpremLrpgDlVavdkdtg 50 
                     V++V++v++  ++++Vk +   ++vv +++ v+ ++L +g +V++ +d++
      KKY17470.1  56 VGEVVKVMGT-KKVLVKVHPEGKYVVDISEGVDITKLTVGKRVSLLSDSY 104
                     89*******9.*************************************99 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   2.1e-07   0.00013      35      96 ..     168     237 ..     143     244 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.1e-07
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkitsgPvleka..gdlaalltnl......eekdvlfideihrl 96 
                  vllyGpPG Gkt la+ +a+  + k+   sg  l ++  g+ + ++ +l      ++  ++f+dei  +
  KKY17470.1 168 GVLLYGPPGTGKTLLARAVAHHADCKFIRVSGSELVQKyiGEGSRMVRELfvmareHAPSIIFMDEIDSI 237
                 59***********************988888876544323333333322211111134468899998766 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.1e-06    0.0018      44      71 ..     163     190 ..     145     214 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3.1e-06
   IstB_IS21  44 iekkenivllGpsGvGKshlaialgvea 71 
                 i++ ++++l Gp+G+GK+ la a++++a
  KKY17470.1 163 IAQPKGVLLYGPPGTGKTLLARAVAHHA 190
                 6677899******************988 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.8e-05     0.029       1      25 [.     169     200 ..     169     240 .. 0.78
   2 ?    1.3   0.0      0.78   4.7e+02      15      69 ..     328     379 ..     325     386 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.8e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.......g 25 
                 +ll G+pG+GKt la++++ +  +       +
  KKY17470.1 169 VLLYGPPGTGKTLLARAVAHHADCkfirvsgS 200
                 799***************99977776755542 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.78
      AAA_18  15 akeLskrlgf.gvnlrdvakenglllevdpealdeskrldedkldklldaleenss 69 
                 +k  +k++g+ g +l+ v++e g++  ++       ++ +ed++ +  + l+++++
  KKY17470.1 328 TKIAEKMNGCsGAELKGVCTEAGMYALRERR----VHVTQEDFDLATAKVLNKHDD 379
                 55566666999**************999888....777777777776666666654 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.8e-06    0.0023      51      91 ..     167     205 ..     156     218 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.8e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevysl 91 
                 ++vLl Gp+gtGkt la a++++  +d +f+ +sgse+ + 
  KKY17470.1 167 KGVLLYGPPGTGKTLLARAVAHH--ADCKFIRVSGSELVQK 205
                 89*******************97..5799********8765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   6.7e-06     0.004       2      40 ..     169     209 ..     169     237 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 6.7e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgt 40 
                 vll G+pG+GK+ la+ ++ + +  ++++s  +l +++ g+
  KKY17470.1 169 VLLYGPPGTGKTLLARAVAHHADckFIRVSGSELVQKYIGE 209
                 7899*************986666779999999988877665 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.6e-05     0.015       2      31 ..     169     198 ..     168     220 .. 0.93
   2 ?   -2.7   0.0       8.5   5.1e+03      83     101 ..     351     369 ..     316     374 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.6e-05
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriq 31 
                 vll g PG++ktll++a+a++ d++f r+ 
  KKY17470.1 169 VLLYGPPGTGKTLLARAVAHHADCKFIRVS 198
                 7999***********************995 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 8.5
       AAA_3  83 leameerqvtvegethklp 101
                 + a++er+v v++e ++l 
  KKY17470.1 351 MYALRERRVHVTQEDFDLA 369
                 4567777777777777665 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.2e-05     0.019       5      37 ..     134     184 ..     131     190 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.2e-05
      ATPase   5 IeglDeilk..................gGipegrvvlitGepGtGKtifal 37 
                 I glD+ +k                   Gi + + vl++G pGtGKt++a 
  KKY17470.1 134 IGGLDQQIKeikevielglqhpelfesLGIAQPKGVLLYGPPGTGKTLLAR 184
                 6677777755777777777777777778********************985 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   2.9e-05     0.017      24      42 ..     168     186 ..     155     190 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.9e-05
  Mg_chelatase  24 nlllvGppGsGKtmlakrl 42 
                    +ll+GppG+GKt+la+++
    KKY17470.1 168 GVLLYGPPGTGKTLLARAV 186
                   68**************987 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   3.3e-05      0.02      19      59 ..     166     206 ..     140     220 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.3e-05
                 TEEEEEEESTTSSHHHHHHHHHHHTT------TTTTSEEEE CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgveevkSPTFtlveeY 59 
                  + +lL+G+ G+GKT l+r++a++ +++ ++     lv++Y
  KKY17470.1 166 PKGVLLYGPPGTGKTLLARAVAHHADCKFIRVSGSELVQKY 206
                 4459********************99995655556777777 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   3.3e-05      0.02       2      38 ..     169     210 ..     168     230 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.3e-05
      AAA_28   2 ivitGgestGKTtlleaLaar....gypvv.pEaareileek 38 
                 + + G+++tGKT l++a a +     ++v   E + +++ e+
  KKY17470.1 169 VLLYGPPGTGKTLLARAVAHHadckFIRVSgSELVQKYIGEG 210
                 6799***************99855444455566666555544 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.9e-05     0.035      19     115 ..     123     233 ..     115     237 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.9e-05
      DUF815  19 veevdevklddLvgidkqkealventeqfleg.........lpannvLLwGarGtGKSslvkallneyaeegLrli..evekedlkelpklvellr... 103
                 ve+v   + d + g+d+q ++++e +e  l++         ++ + vLL+G  GtGK  l +a+ +++  + +r+   e+ ++ + e +++v++l    
  KKY17470.1 123 VEKVPDSTYDMIGGLDQQIKEIKEVIELGLQHpelfeslgiAQPKGVLLYGPPGTGKTLLARAVAHHADCKFIRVSgsELVQKYIGEGSRMVRELFvma 221
                 5555555666666666666666555443222211111111134578*********************99999988433777888888888777654222 PP

      DUF815 104 erperfilfvDD 115
                 +++   i+f+D 
  KKY17470.1 222 REHAPSIIFMDE 233
                 555567888876 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00015     0.092      21      46 ..     165     190 ..     153     210 .. 0.78
   2 ?   -2.2   0.0       4.8   2.9e+03      95     105 ..     227     237 ..     220     241 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00015
                      SSS-EEEECSTTSSHHHHHHHHHHHS CS
  Sigma54_activat  21 tdlsvlitGesGtGKellaraiheas 46 
                      ++  vl+ G  GtGK+llara+ ++ 
       KKY17470.1 165 QPKGVLLYGPPGTGKTLLARAVAHHA 190
                      56789***************986543 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.8
                      SEEEEETGGGS CS
  Sigma54_activat  95 GtlfLDeigel 105
                      +++f+Dei ++
       KKY17470.1 227 SIIFMDEIDSI 237
                      689*****986 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00017       0.1      20      42 ..     167     189 ..     156     196 .. 0.84
   2 ?   -1.8   0.0         3   1.8e+03      76     114 ..     252     290 ..     244     296 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00017
                 SEEEEE--TTSSTTHHHHHHHHH CS
        PhoH  20 divfaiGpaGtGKtylavalave 42 
                 + v   Gp GtGKt+la a+a +
  KKY17470.1 167 KGVLLYGPPGTGKTLLARAVAHH 189
                 567899************99976 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3
                 --TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGT CS
        PhoH  76 vdpylrplydaLkdllgaekvekllekgkievaplaymR 114
                 v+  +  l ++L+ +  +++++ ++ ++++ +++ a +R
  KKY17470.1 252 VQRTMLELLNQLDGFEPTKNIKVIMATNRLDILDPALLR 290
                 556677788888889999999999999999999999988 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   7.8e-05     0.047      30      58 ..     163     191 ..     155     236 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.8e-05
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkkld 58 
                 +++ k vll+Gp GtGKt++++ + ++ d
  KKY17470.1 163 IAQPKGVLLYGPPGTGKTLLARAVAHHAD 191
                 678899***************99988877 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00017       0.1       4      22 ..     168     186 ..     165     205 .. 0.87
   2 ?   -3.1   0.0       8.7   5.2e+03     105     123 ..     250     268 ..     214     279 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00017
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                  +l+yGp+g+GKT la+  
  KKY17470.1 168 GVLLYGPPGTGKTLLARAV 186
                 589***********99865 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8.7
      AAA_24 105 gelaeefrrllkklqelrk 123
                 +e+++ + +ll++l+ +  
  KKY17470.1 250 SEVQRTMLELLNQLDGFEP 268
                 5666666666666665554 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   0.00012     0.069       1      57 [.     169     216 ..     169     243 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00012
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidD 57 
                   ++lyGp+g+GK++la+ +a++             ++r + ++ +++Y g+   ++ +
    KKY17470.1 169 VLLYGPPGTGKTLLARAVAHHAD---------CKFIRVSGSELVQKYIGEGSRMVRE 216
                   689**************554433.........3334555555555555555555555 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   0.00011     0.068       3      76 ..     167     237 ..     165     283 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      AAA_14   3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76 
                 k +++ G+  +GKT l++ ++++      +++ ++  +  +k + + +++ ++++ +++e+  +++f+DEi  +
  KKY17470.1 167 KGVLLYGPPGTGKTLLARAVAHHAD---CKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSI 237
                 568999**************97777...8999999998777666655434433333334468899******987 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00035      0.21      36      56 ..     169     189 ..     163     193 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00035
      AAA_25  36 allaGapgtGKttlaldlala 56 
                 +ll+G+pgtGKt la  +a++
  KKY17470.1 169 VLLYGPPGTGKTLLARAVAHH 189
                 69*************988876 PP

>> Prot_ATP_OB_N  Proteasomal ATPase OB N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00052      0.31      18      45 ..      72      99 ..      55     104 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00052
  Prot_ATP_OB_N 18 lvggrrmrVavsPlvdaeeLrpGqeVlL 45
                   ++   +++V +s  vd+++L++G +V L
     KKY17470.1 72 VHPEGKYVVDISEGVDITKLTVGKRVSL 99
                   555679********************77 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00025      0.15     117     137 ..     169     189 ..     165     193 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00025
   Parvo_NS1 117 vwfyGpantGktnlaeaIaka 137
                 v++yGp+ tGkt la+a a+ 
  KKY17470.1 169 VLLYGPPGTGKTLLARAVAHH 189
                 899***************996 PP

>> HR1  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.6   0.00077      0.46      34      63 ..      22      51 ..       9      53 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00077
         HR1 34 kkvrqeaeselsesnskielLreqLeelqa 63
                + v+++ e++ ++ ns+++lLre+L  lq+
  KKY17470.1 22 QAVLRRLEAQRNDYNSRVRLLREELGLLQQ 51
                679*********************987776 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00047      0.28      14      51 ..     164     199 ..     156     224 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00047
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdelerqgnvvrldp 51 
                  +Pk +ll G pG GK+ la++++     + +++r+++
  KKY17470.1 164 AQPKGVLLYGPPGTGKTLLARAVAHHA--DCKFIRVSG 199
                 58********************99887..677777765 PP

>> DUF2072  Zn-ribbon containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00059      0.35      95     129 ..      50      84 ..      10      87 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00059
     DUF2072  95 lepGsYelNlekLlerdelvmalkeegkYvvdlps 129
                  +pGsY   + k++ ++ ++++++ egkYvvd+++
  KKY17470.1  50 QQPGSYVGEVVKVMGTKKVLVKVHPEGKYVVDISE 84 
                 589*****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 2472.27
//
Query:       KKY17471.1  [L=978]
Description: putative calcium permease family membrane transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-19   69.8  31.6    3.7e-14   52.9  10.7    4.0  4  Na_Ca_ex  Sodium/calcium exchanger protein
      7e-17   61.9   9.6      7e-17   61.9   9.6    2.9  2  YccF      Inner membrane component domain
  ------ inclusion threshold ------
       0.76   10.4   2.1        9.3    6.9   0.0    3.4  3  Renin_r   Renin receptor-like protein


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   3.9      0.18     1e+03     109     149 ..     221     261 ..     196     263 .. 0.64
   2 ?   -1.4   0.5      0.34     2e+03     100     126 ..     340     367 ..     321     376 .. 0.65
   3 !   31.9  12.9   1.9e-11   1.1e-07       3     123 ..     379     494 ..     377     566 .. 0.81
   4 !   52.9  10.7   6.2e-18   3.7e-14       2     150 ..     782     935 ..     781     936 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHTCHHHHH..HTEEHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 109 vallllllvlllllplfv..pgrltvleglvllllYalylvls 149
                 +a+++l+++l+++l+     p  +++   l+ l++Y+ly + +
  KKY17471.1 221 LAVIALAAALVCFLF--SfdPSAIEYGRVLASLSWYLLYPFGQ 261
                 223333333333333..246*****************996655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.34
                 CHHH.HHHHHHHHHHHHHHHHTCHHHHH CS
    Na_Ca_ex 100 kldl.gllllvallllllvlllllplfv 126
                 ++d  +++l+ +l+l+l+++l +++l+v
  KKY17471.1 340 TVDGtNIFLINLLVLVLFTILDYFVLDV 367
                 5566577777777777777776655544 PP

  == domain 3  score: 31.9 bits;  conditional E-value: 1.9e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCH CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslkl 101
                 +++f l+l+ +++la f+ +++++i+     s   +G +++A+++++ E+++  +a+  g+++l+ g+++Gs+++ +ll  Gl++++g+  +++ +  +
  KKY17471.1 379 ALIFPLALFSVIPLAYFIGQAVASIS---AQSSMGVGAVVNAFFSTVVEVFLYCVALNDGKAQLVEGSIIGSIFAGILLLPGLSMCFGA-LKRKTQ-RF 472
                 578889999*****************...889999****************************************************99.555545.78 PP

                 HH.HHHHHHHHHHHHHHHHTCHH CS
    Na_Ca_ex 102 dl.gllllvallllllvlllllp 123
                 ++ ++ ++ ++ll+++v+++  p
  KKY17471.1 473 NVkSAGVTSTMLLFAVVAAFG-P 494
                 888899999999998888865.4 PP

  == domain 4  score: 52.9 bits;  conditional E-value: 6.2e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHH........B CS
    Na_Ca_ex   2 lfvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigs........l 92 
                 +++++++++++ +++a++lv++++++ +  +i +++lGltl+Al+ + +E++ +i++a++g++ l++    + +++++ll i+  +++++        +
  KKY17471.1 782 STIILLVATVAYAIIAEILVDTVDVVLEGSDIDQKFLGLTLFALVPNTTEFLNAISFAMNGNIALSMEIGSAYALQVCLLQIPALVFFSAvhgryidpE 880
                 6899***********************999**********************************************************99888444443 PP

                 TTSSCECCHHHHHHHHHHHHHHHHHHHTCHHHHH.HTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  93 kvdseslkldlgllllvallllllvlllllplfv.pgrltvleglvllllYalylvlsl 150
                    s+++ l ++ + +++++l++l+l  l    + +g+ ++++g +l ++Y++ ++ ++
  KKY17471.1 881 DLASHTFYLIFPQWDMILVILSVLLLSNL----LgEGKSNYFKGSILTFTYFVAILGFW 935
                 44444455555555555555555444444....247*****************998765 PP

>> YccF  Inner membrane component domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   9.6   1.2e-20     7e-17       1      51 []     208     261 ..     208     261 .. 0.98
   2 ?   -3.5   0.4         3   1.8e+04      14      28 ..     346     360 ..     343     363 .. 0.71

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 1.2e-20
        YccF   1 lgNilWlllfGwwlaliyllaglllfitii...gipygrvlfklakyllwPFGk 51 
                 ++Ni+W+llfGwwla+i l a+l++f++ +   +i+ygrvl  l++yll+PFG+
  KKY17471.1 208 IFNIVWTLLFGWWLAVIALAAALVCFLFSFdpsAIEYGRVLASLSWYLLYPFGQ 261
                 79**************************99***********************6 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3
        YccF  14 laliyllaglllfit 28 
                 ++li ll+ +l++i+
  KKY17471.1 346 IFLINLLVLVLFTIL 360
                 677778877777765 PP

>> Renin_r  Renin receptor-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0016       9.3      48      77 ..     202     231 ..     171     241 .. 0.73
   2 ?    0.4   0.0      0.17     1e+03      45      72 ..     337     364 ..     302     373 .. 0.62
   3 ?   -1.5   0.1      0.67     4e+03      57      80 ..     553     576 ..     542     579 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0016
     Renin_r  48 ssdYpaiFniiLwlvvvlvlaliaivvala 77 
                  s++ aiFni+  l    +la+ia++ al+
  KKY17471.1 202 VSNWLAIFNIVWTLLFGWWLAVIALAAALV 231
                 36899***********99999999887765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.17
     Renin_r  45 kkyssdYpaiFniiLwlvvvlvlaliai 72 
                  ky+ d + iF i L + v++++  +++
  KKY17471.1 337 WKYTVDGTNIFLINLLVLVLFTILDYFV 364
                 4788888999999999888887754444 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.67
     Renin_r  57 iiLwlvvvlvlaliaivvalasmd 80 
                 ++L  ++ l+++l + + +++s d
  KKY17471.1 553 LFLAYMIGLWFTLRTHAAVIWSTD 576
                 68889999****999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (978 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       930  (0.0518713); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.50
# Mc/sec: 5917.15
//
Query:       KKY17472.1  [L=578]
Description: putative riboflavin-specific deaminase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-25   87.8   0.0    1.6e-24   86.9   0.0    1.5  1  RibD_C    RibD C-terminal domain


Domain annotation for each model (and alignments):
>> RibD_C  RibD C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.0   8.9e-29   1.6e-24       1     183 [.     286     502 ..     286     533 .. 0.81

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 8.9e-29
                 -EEEEEEEEETTSBSSCTTSSGCTSS-HHHHHHHHHHHHTSSEEEEEHHHHHHHT--SS--SSCHSCHHHTT.GSS-EEEEEETTS-S-TTSH...... CS
      RibD_C   1 pyvilklavSlDGklaaaggeskwitgeearadvhelraeadailvGrgtvladnpsltvrwvkkreaeadaearqpvrvVvdstlrvpldak...... 93 
                 p+++l++a+SlD +++ a+  ++ ++g+e +a++h lr+++d+il+G+gt  adnp l++r+ +       +   qp+ +++d   r+p + +      
  KKY17472.1 286 PFITLTYATSLDSRVSIAQSVRTVLSGPESKAMTHFLRSKHDGILIGVGTAMADNPGLNCRLEGVGGYGSPGLRGQPRPIIIDPYGRLPVTPNmeilkl 384
                 89*************************************************************99743244444*************999988998886 PP

                 .HHHSS.S-EEEEESSCSCHHHHHHCC.........E..............SE-HHHHHHHHHHTT--EEEEEETHHHHHHHHHTT...T-SEEEEEEE CS
      RibD_C  94 .vltdd.aptlvatteeadkekveklk.........v..............rvdlkelleeLkergirsllveGGatLagsllrag...lvDelrlyia 164
                     ++ ap +++ + +  +e ++k+          +               + + +++  L+++g++s++veGG++++++llr+    +v ++++++a
  KKY17472.1 385 sRAGRGhAPWIIVAEGTKLNESFKKVLrqsggaylqIrrqyshgpnqrgqpIISWYDIFTVLAREGLQSVMVEGGGMVLSELLRNEyrsIVASVIVTVA 483
                 53444545555555555556777776678887766616667778889999999*******************************754449********* PP

                 SCE--TTSBCSSSSST-SS CS
      RibD_C 165 PkllGgagktlfdgegfka 183
                 P++lG+ g+t+ +++ +++
  KKY17472.1 484 PTFLGNIGTTVAPDTRIPT 502
                 ******7788777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.52
# Mc/sec: 3338.31
//
Query:       KKY17473.1  [L=304]
Description: hypothetical protein UCRPC4_g05534 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.079   12.6   0.9       0.11   12.1   0.2    1.5  2  CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like


Domain annotation for each model (and alignments):
>> CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.27   4.8e+03      41      68 ..     124     150 ..     113     164 .. 0.68
   2 ?   12.1   0.2   6.2e-06      0.11      88     153 ..     221     290 ..     198     303 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.27
   CPP1-like  41 LreRqegkikvperirfaekkeeespps 68 
                 L+ R+ +k +v e+ r   +++++s+++
  KKY17473.1 124 LQLRRPTK-QVYEAFRSDFNNSHQSQSK 150
                 67777788.8888887555555555443 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 6.2e-06
   CPP1-like  88 ldtPssedlliraavflvlavltlvapaes....vpalllalglgasiyflnrKekklgravlltlvgLv 153
                 +  +s + +l +a++f+++  l +v ++++    + a ++a+++++ ++   r+++ +g +++++ v+ v
  KKY17473.1 221 ICVASINIILAAAMLFGAIYNLYYVDNDKTklglIAAYTVAFAFCVGVLTNARRSEMFGACAAYSAVLVV 290
                 56678899**********************6665556666666666666667999999999998866544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       934  (0.0520944); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 1852.39
//
Query:       KKY17474.1  [L=472]
Description: hypothetical protein UCRPC4_g05535 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-06   28.5   0.0       0.02   15.4   0.0    2.9  3  gag-asp_proteas  gag-polyprotein putative aspartyl protease
    4.5e-06   27.2   0.0      0.026   15.2   0.0    2.9  3  Asp_protease_2   Aspartyl protease


Domain annotation for each model (and alignments):
>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00012       1.1       5      91 ..     144     240 ..     140     241 .. 0.80
   2 !   15.4   0.0   2.2e-06      0.02       7      50 ..     285     330 ..     279     353 .. 0.78
   3 ?   -2.4   0.1      0.81   7.3e+03       6      19 ..     422     436 ..     420     438 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00012
                      ETTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB....TT--EE-TTSTT-EEEEEE.EEEE......EETTEEEEEEEEEESS..SSEEEEHH CS
  gag-asp_proteas   5 ingkpvkflvDTGAsstiiseelaerlglsrkedk..gkvevktangeveakrvrld.svki.....ggielrnvsavvlegel..ddlLLGld 88 
                      + g p++ + D+G +  +is    ++l+l+ +      + +v+ an +  a+  +++ +++i       i ++  +++v+ + +   ++++G+ 
       KKY17474.1 144 LSGLPLDSVPDSGSELNAISLIALKKLKLKAEAVWgsDDDQVQMANHSLDAALCQIRlNIQIpsprsRPIDAQTWTFHVFAKLAdgVKVIMGQK 237
                      6788999999*********************997522479*******999887776655666434337789999999**9977534778***** PP

                      HHH CS
  gag-asp_proteas  89 fLk 91 
                      fL+
       KKY17474.1 238 FLE 240
                      *97 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2.2e-06
                      TEEEEEEEETT-SS-EEEHHHHHHTTGGGGE..B..TT--EE-TTS CS
  gag-asp_proteas   7 gkpvkflvDTGAsstiiseelaerlglsrke..dkgkvevktange 50 
                       + v +l DTG +  ++s+++a+rl+l+ ++  +++++ v+ ang+
       KKY17474.1 285 QNLVLALADTGSDINLVSRTCARRLRLQISPllQEENSCVQFANGT 330
                      5567799****************99887766114556777777776 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.81
                      TTEEEEEE.EETT-S CS
  gag-asp_proteas   6 ngkpvkfl.vDTGAs 19 
                      n ++  f+ vDT A+
       KKY17474.1 422 NRHTSAFVtVDTAAT 436
                      6776666669**998 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.3   1.1e+04      21      42 ..      37      58 ..      34      61 .. 0.82
   2 !    8.9   0.0   0.00025       2.3       2      65 ..     141     207 ..     140     238 .. 0.70
   3 !   15.2   0.0   2.9e-06     0.026       6      49 ..     284     329 ..     277     345 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.3
  Asp_protease_2 21 tlispelaeklglkvreseltv 42
                    t i+++  ek+ +++r+s++++
      KKY17474.1 37 TSIDTQIDEKITINPRDSRGPQ 58
                    7899999999999999988776 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00025
  Asp_protease_2   2 pvtinGkpvrfllDTGasttlispelaeklglkvres..eltvrvsgaggevkarlvrld.slklgg 65 
                     p+ + G p++ + D+G+  + is  + +kl+lk ++   + + +v+ a+ +  a+l +++ ++++ +
      KKY17474.1 141 PLYLSGLPLDSVPDSGSELNAISLIALKKLKLKAEAVwgSDDDQVQMANHSLDAALCQIRlNIQIPS 207
                     667899**************************98764112357778888887777777776666655 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 2.9e-06
  Asp_protease_2   6 nGkpvrfllDTGasttlispelaeklglkvreseltvrv..sgagg 49 
                     +   v +l DTG++ +l+s++ a++l+l+ +++  +  +  + a+g
      KKY17474.1 284 DQNLVLALADTGSDINLVSRTCARRLRLQISPLLQEENScvQFANG 329
                     5557889*********************999874332222266666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3139.73
//
Query:       KKY17475.1  [L=262]
Description: gpi anchored protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00075   19.6   2.4     0.0011   19.0   2.4    1.3  1  Podoplanin      Podoplanin
     0.0014   19.2   2.0     0.0048   17.5   2.0    1.9  1  DUF4690         Small Novel Rich in Cartilage
      0.003   17.5   0.1     0.0091   15.9   0.0    1.7  2  TMEM154         TMEM154 protein family
  ------ inclusion threshold ------
      0.011   15.9   0.0       0.02   15.1   0.0    1.4  1  Glycophorin_A   Glycophorin A
      0.019   13.8   0.2      0.028   13.2   0.2    1.2  1  Amnionless      Amnionless
      0.029   14.8   0.1      0.051   14.0   0.1    1.3  1  PhoR            Phosphate regulon sensor protein PhoR
       0.21   12.1   0.0       0.36   11.3   0.0    1.3  1  TraL            TraL protein
       0.27    9.3   8.1       0.37    8.8   8.1    1.2  1  Sporozoite_P67  Sporozoite P67 surface antigen
       0.46   11.2   9.8        1.2    9.9   9.8    1.7  1  MAGE_N          Melanoma associated antigen family N terminal
        1.7    6.8   7.8        2.3    6.4   7.8    1.1  1  RAP1            Rhoptry-associated protein 1 (RAP-1)
        9.1    4.8   5.5         30    3.1   3.4    2.2  2  MSP1_C          Merozoite surface protein 1 (MSP1) C-terminus


Domain annotation for each model (and alignments):
>> Podoplanin  Podoplanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   2.4   7.1e-07    0.0011      65     145 ..     142     217 ..     109     226 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 7.1e-07
                 XXXXXXXXXX-----GGG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Podoplanin  65 ttlvptstesvtdlrledlptaestvkakeesqstttlnvvtshstekvgeetettvekdGLatvtLvgiivGvllaigfi 145
                    v+t+  +vt   +    ta st      s +ttt+   ts++     +  +++ +++GL+  ++ g++vG + + +++
  KKY17475.1 142 CFNVSTEDTEVTTSSVGASGTASSTSSSTAASATTTTT--GTSSA---NSNASQKSRHNGGLSGGAIAGVVVGSVAGAALL 217
                 44455555555555555555555553333333333322..22222...335689999****************88776665 PP

>> DUF4690  Small Novel Rich in Cartilage
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   2.0   2.9e-06    0.0048      20      92 ..     159     226 ..     143     229 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.9e-06
     DUF4690  20 GegplesttkeresdltdlpastselepeDtthlerldeeegslGPGaiaaiviaalLgasvllaLvvitLrk 92 
                  +g+ +st+++ + ++t   + ts+++ + +       +++g l  Gaia +v+ ++ ga+ llaL  + L +
  KKY17475.1 159 ASGTASSTSSSTAASATTTTTGTSSANSNASQ----KSRHNGGLSGGAIAGVVVGSVAGAA-LLALAAVYLWR 226
                 23445566665555555544444444444333....3477799*************99886.78988887766 PP

>> TMEM154  TMEM154 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.5   2.4e+03       5      48 ..      22      65 ..      18      74 .. 0.64
   2 !   15.9   0.0   5.6e-06    0.0091       2      91 ..     148     235 ..     143     243 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.5
     TMEM154  5 eksgdtaletatleeesadatsaasteseslkqeeakeslssae 48
                +  g+ a+ t+++e + ++ ++  + ++es++ ++a++ ++ + 
  KKY17475.1 22 PPCGSQAGVTNRTEFPLTNGAVSLVIQDESYNVNLAIAYINDPT 65
                55677777777777777777777777788888666666555543 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 5.6e-06
     TMEM154   2 eeseksgdtaletatleeesadatsaasteseslkqeeakeslssaelsnesdqlelvlmiiiPlvllillllvviiliqkkkrkrsKdd 91 
                 e++e  +++ + + t++++s  +++aas+++ +  ++ a+ ++s+   +n   +   +  +++ +v+ + ll + ++   ++++k+   d
  KKY17475.1 148 EDTEVTTSSVGASGTASSTS--SSTAASATTTTTGTSSANSNASQKSRHNGGLSGGAIAGVVVGSVAGAALLALAAVYLWRYRQKKVQRD 235
                 34444444433333333222..22233333344446667888888888888888888**********99999999999989999998766 PP

>> Glycophorin_A  Glycophorin A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   1.2e-05      0.02       9      92 ..     152     235 ..     144     258 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.2e-05
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXSSSSSSS-TTHHHHHHHHHHHHHHHHHHHHHHHHTHSXXXXXX CS
  Glycophorin_A   9 sttgdkskasvtastpsahevseltirtevaaeqeetgereqlvhdFselvitliifgvmAgvigtillisYlirRliKKssvd 92 
                     tt+ +  + +  st+s + +s +t+ t ++ ++ +  +++  +   s   i+++++g +Ag  +  l   Yl r  +KK + d
     KKY17475.1 152 VTTSSVGASGTASSTSSSTAASATTTTTGTSSANSNASQKSRHNGGLSGGAIAGVVVGSVAGAALLALAAVYLWRYRQKKVQRD 235
                    4445555556666777777888888888888888888999999999***************************99999998876 PP

>> Amnionless  Amnionless
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   1.7e-05     0.028     309     387 ..     168     249 ..     145     261 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
  Amnionless 309 lladiaehgealgilsaeletsgasssdssaagapgesaglvlgivfglvlllllllillllllrrkgv.......lrlpqllksp 387
                  ++ + +   ++g  sa++++s++s +++  +g  g  ag+v+g v+g++  ll l+ ++l  +r+k v       lr+  +++  
  KKY17475.1 168 SSTAASATTTTTGTSSANSNASQKSRHNGGLSG--GAIAGVVVGSVAGAA--LLALAAVYLWRYRQKKVqrdrvvaLRMGDWTNPA 249
                 222333444556666777777777666666544..566666666666662..2222333333444444445666544666654433 PP

>> PhoR  Phosphate regulon sensor protein PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   3.1e-05     0.051      15      45 ..     200     230 ..     193     235 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.1e-05
        PhoR  15 aallvgllvgalaallllalllllawhlyql 45 
                   +++g++vg +a + llal+++ +w+++q 
  KKY17475.1 200 GGAIAGVVVGSVAGAALLALAAVYLWRYRQK 230
                 45699***********************995 PP

>> TraL  TraL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00022      0.36      28      84 ..     202     260 ..     198     262 .] 0.70

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00022
        TraL  28 lvvgillgqfviglv..lglllvlllrklkkgrgdgfllhllYWylpasllkfkktPds 84 
                 ++ g+++g++    +  l+++ ++ +r+ k +r + ++l +  W  pa+ +  ++tP+ 
  KKY17475.1 202 AIAGVVVGSVAGAALlaLAAVYLWRYRQKKVQRDRVVALRMGDWTNPAKRTASQETPSE 260
                 4455666655444441156666777777888888999999*******998889999976 PP

>> Sporozoite_P67  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   8.1   0.00023      0.37     254     302 ..     148     191 ..     112     216 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00023
  Sporozoite_P67 254 eenksiepgvGvpGvrvgaatssssttspssstttttpassgpsaqgsh 302
                     e+++++   vG +G     ++ss+s+++++s+ttttt +ss+ s+   +
      KKY17475.1 148 EDTEVTTSSVGASG-----TASSTSSSTAASATTTTTGTSSANSNASQK 191
                     55666666666666.....777777777777777777888876664432 PP

>> MAGE_N  Melanoma associated antigen family N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   9.8   0.00072       1.2      38      87 ..     146     194 ..     134     199 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00072
      MAGE_N  38 ssplsedtpesspaagtpsapqspqgapssttaaaavsrtrsdegsesqd 87 
                 s+ + e t++s+ a+gt+s++  +  a+s+tt+++++s+  s+ + +s+ 
  KKY17475.1 146 STEDTEVTTSSVGASGTASSTS-SSTAASATTTTTGTSSANSNASQKSRH 194
                 6889999*********888766.678888888999999999998888875 PP

>> RAP1  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.8    0.0014       2.3     132     190 ..     152     210 ..     126     222 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0014
        RAP1 132 skpkststeslksssdskskasaksnvksaskyGesssseesatdsskasasvagiv.Ga 190
                  + +s  +++ +ss+ s++ asa +   +++   +s+ s++s  + + +  ++ag+v G+
  KKY17475.1 152 VTTSSVGASGTASSTSSSTAASATTT-TTGTSSANSNASQKSRHNGGLSGGAIAGVVvGS 210
                 23455566677777766666666655.556667899*******99999999999975154 PP

>> MSP1_C  Merozoite surface protein 1 (MSP1) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.062     1e+02     295     353 ..      15      76 ..       9      83 .. 0.78
   2 ?    3.1   3.4     0.019        30     262     309 ..     169     215 ..     142     250 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.062
      MSP1_C 295 Gavkeetpepvagsvasglte...lqvvvklqdydeeedkvvalslvddnedddeidqvatG 353
                 Ga++++tp+  +++  +  te    + +v l   de ++  +a + ++d   +de + +++ 
  KKY17475.1  15 GAAQDNTPPCGSQAGVTNRTEfplTNGAVSLVIQDESYNVNLAIAYINDPTSNDEFETIVSS 76 
                 88888888877766545566633346788888889********************9999885 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.019
      MSP1_C 262 stseaavttavtadaavpdatPeglsvrgagvsGavkeetpepvagsv 309
                 st ++a+tt++ +  a+ +a  +++  +g  + Ga+++ +  +vag+ 
  KKY17475.1 169 STAASATTTTTGTSSANSNASQKSR-HNGGLSGGAIAGVVVGSVAGAA 215
                 4444455555555555566666665.5555667888888888888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1458  (0.0813208); expected 358.6 (0.02)
Passed bias filter:                      753  (0.041999); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.51
# Mc/sec: 1559.42
//
Query:       KKY17476.1  [L=243]
Description: hypothetical protein UCRPC4_g05537 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.72    9.2   2.4       0.85    9.0   2.4    1.1  1  Plasmodium_Vir  Plasmodium vivax Vir protein
        2.9    7.0  19.3        3.9    6.6  19.3    1.2  1  SOG2            RAM signalling pathway protein


Domain annotation for each model (and alignments):
>> Plasmodium_Vir  Plasmodium vivax Vir protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.4   9.5e-05      0.85     194     317 ..      85     235 ..      56     243 .] 0.48

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 9.5e-05
  Plasmodium_Vir 194 kynpkkllskl.sCknk.........spkeaeeklk....qekaaeapellnkekaeqgksekslgseslssekpearkgve............. 261
                     +y  +++ ++   C++          +        +    + +aa+   ++++ +a++   ++s +++++ss+   a++ v+             
      KKY17476.1  85 QYYGDSVSEAAeACGDDatpsastatT------GASsttaASSAATTAAAVTTTSASSVVATSSAAAAASSSAATVASSSVAtaassyaataaas 173
                     344444444455555557664444332......22222222222222222222222222222222223333333444444446777777777777 PP

  Plasmodium_Vir 262 ........eqlvhaltsassgtgndaspesiansssslesvseelssnfirniimaaailgtgi 317
                             +  v+a+t  s   ++++++ s+a+s++s+es++   s  + ++ +  +ai gt +
      KKY17476.1 174 svatsattSSAVTASTGFSTSVSSSNATVSAASSTPSYESYTGGASTLSGSKAM--VAIVGTLA 235
                     777777776677777777777777777777777777777777765555555544..34444444 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  19.3   0.00044       3.9     231     344 ..     104     208 ..      70     232 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00044
        SOG2 231 plrsdqipfnlsrsrrssssgnsaspaangaqsetsersasssg.vqssasstPlgegstspp.galsrqslsttgststltsssksrsssrsntnasa 327
                 p+         s++ + +ss++ as+aa++a   t+ +++s+ + ++s a     ++++ +++ +a++++s+++t + s++ +s+  +s+ +++t  s+
  KKY17476.1 104 PSA--------STATTGASSTTAASSAATTAAAVTTTSASSV-VaTSSAAAAASSSAATVASSsVATAASSYAATAAASSVATSATTSSAVTASTGFST 193
                 222........2223333444444444444433333322222.21222222222222222223467777777777777777777777777777777778 PP

        SOG2 328 stprslattpappasae 344
                 s ++s+at++a  as++
  KKY17476.1 194 SVSSSNATVSA--ASST 208
                 88888887777..2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2000  (0.111551); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                       121  (0.00674884); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.35s 00:00:01.17 Elapsed: 00:00:00.49
# Mc/sec: 1497.39
//
Query:       KKY17477.1  [L=317]
Description: putative ribonuclease t2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-37  129.5   0.0    2.3e-37  129.0   0.0    1.1  1  Ribonuclease_T2  Ribonuclease T2 family
  ------ inclusion threshold ------
      0.066   11.6   0.1      0.091   11.2   0.1    1.1  1  FMO-like         Flavin-binding monooxygenase-like


Domain annotation for each model (and alignments):
>> Ribonuclease_T2  Ribonuclease T2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   0.0   2.5e-41   2.3e-37       2     174 ..      89     309 ..      88     315 .. 0.78

  Alignments for each domain:
  == domain 1  score: 129.0 bits;  conditional E-value: 2.5e-41
                      SEEEEEEE-HHHHSS..SSS----.-T.S--SS-EEEEEEEE-TTS-.--S--TTS---.............................GGGG.. CS
  Ribonuclease_T2   2 dlllltqqWpgsfCeektkkecekvpd.kpaedftihGLwpdnsgksypenCnssekfd.............................ekei.. 63 
                      +lll tq+W   +       e e   +  p++++t+hGLwpd  ++sy+++C+ s+++d                             e     
       KKY17477.1  89 GLLLATQFWSTYTGL-----ESEG--QlLPPDSWTLHGLWPDFCNGSYTQYCDLSRQYDpdpspntttgtssgtpvppyegppistfiE--Afg 173
                      578999***333332.....2212..225688***********8889************************************966642..045 PP

                      .GGGHHHHHHHS----SH...HHHHHHHHHTGGGGTT...T....S...-SH.HHHHHHHHHHHTT--HHHHHHHTT--S.SS-EEEHHHHHHH CS
  Ribonuclease_T2  64 .sdllaelnkyWpslikk...slwkhEwekHGtCaas.lpa....l...kse.hkYFqkalelrkkldlkkvLakagIvPsktksyslseikda 144
                        dll+ +nkyW++   +   +lw+hE++kH+tC+++ +      +   +s   +YF++a+++  +l+++++L++agI+Ps+t+ y++++i++ 
       KKY17477.1 174 lYDLLDWMNKYWINQG-DpnwHLWAHEFSKHATCFSTfDLPcygpKyvnHSDvIEYFETAIKFELRLPTWDWLSAAGITPSNTTRYTYADIEST 266
                      7*************94.5689**************995433455514533337***************************************** PP

                      HHHHHSS--EEEEEE..--.............EEEEEEEEEEE CS
  Ribonuclease_T2 145 lkkaigvkpkieCskdske.............qalsevelcld 174
                      l+k++g++p+i C+ ++ +             + l+ev+ + d
       KKY17477.1 267 LTKKFGATPYIGCTGPRFNsttagagtndrgyTILDEVWSKAD 309
                      *************653221122233333444477777776665 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1     1e-05     0.091      61      94 ..     200     232 ..     195     239 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1e-05
    FMO-like  61 sskemscfsdfplpedypnflhnsklleylklfa 94 
                  sk  +cfs f lp   p ++++s ++ey+++ a
  KKY17477.1 200 FSKHATCFSTFDLPCYGPKYVNHSDVIEYFET-A 232
                 58999*************************86.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2184.86
//
Query:       KKY17478.1  [L=379]
Description: putative arginase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-87  291.2   0.2      1e-86  290.9   0.2    1.0  1  Arginase  Arginase family


Domain annotation for each model (and alignments):
>> Arginase  Arginase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.9   0.2   5.8e-91     1e-86       2     279 ..      82     369 ..      81     370 .. 0.94

  Alignments for each domain:
  == domain 1  score: 290.9 bits;  conditional E-value: 5.8e-91
                 EEEEEEEE--TTTSSSGGGGGHHHHHHHHHHTSBTHCHEETTTTE...SCCSEEEEEEEEE--SSCHHHHHHHHHHHHHHHHHT.........TCEEEE CS
    Arginase   2 dvallGvPfdaagsgrpGarfGPraireasarleealeynlelgv...leelkivdlgdvavtpvdneevleqieeavaeilka.........gklpiv 88 
                 d+a+lG+Pfd+++s+rpGarfGP  ir++s+r++   ++n++ ++   ++++k+vd+gd+++t+vdn+ +l+q+ +a + i  +           ++++
  KKY17478.1  82 DIAVLGAPFDTGTSYRPGARFGPHGIRDGSRRIRGPHSWNIYSRNnpfTQWAKVVDCGDAPLTFVDNTVALKQLGKAHKIISGRlanndtiskTPRILM 180
                 89********************************534567766667889******************999****99999888878888888778888** PP

                 EESSGGGHHHHHHHHHHHHSTTEEEEEESSS----SSCTTTBSSSTTSHHHHHHHHTSECGCEEEEEEE-STCSH...HHHHHHHTTSEEEEHHHHHHH CS
    Arginase  89 lGGDHsialgilralaekygkplgvihfDAHaDlrtpetegsgnshGtpfrraaeegllkpkklvqiGirsvdne...eyelakelgirvitmreidel 184
                 lGGDH+i+l++lr+  e++g  + vihfD+H+D+++p+  g++++hGt+++ a+eegl+++ +++++Gir++  +   + + + ++g+ +it+r+id++
  KKY17478.1 181 LGGDHTITLAALRSTFERWG-IVNVIHFDSHIDTWNPNVLGDSINHGTFLHIAHEEGLISNHSSIHAGIRAPLGTrdrDIQNDVQCGFDIITARDIDDI 278
                 *******************9.5**************************************************9999777777799************** PP

                 HHHHHHHHHHHHHTCTTSEEEEEEEGGGBBTTTSTSSSS-BSS-B-HHHHHHHHHHHHCHSEEEEEEEE-B-GGGSSTTTHHHHHHHHHHHHHHH CS
    Arginase 185 glkavveeilervgaeedpvylSfDiDvlDpavaPGtGtpepgGltlrellallrelaeklnlvgaDvvEvnPaldteaeqtarlaarlvrelll 279
                 g+k ++++i+ervg  +++vy+S+DiDvlDpa+aP+tGt epgG+++rell+++++l + l++vgaDvvEv+Pa+d+++e+t ++a +++r+l l
  KKY17478.1 279 GVKGIIKQIKERVG--NGKVYISVDIDVLDPAFAPATGTAEPGGWSTRELLSIIDGLTG-LKVVGADVVEVAPAYDNTGETTCIAAGEVARSL-L 369
                 *************8..68*****************************************.******************************994.5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2561.46
//
Query:       KKY17479.1  [L=349]
Description: hypothetical protein UCRPC4_g05540 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-21   75.7   0.9    6.8e-21   75.0   0.9    1.2  1  GCIP      Grap2 and cyclin-D-interacting
  ------ inclusion threshold ------
       0.17   10.4   0.9       0.26    9.8   0.9    1.3  1  RRN3      RNA polymerase I specific transcription initiation 


Domain annotation for each model (and alignments):
>> GCIP  Grap2 and cyclin-D-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.9   7.6e-25   6.8e-21       4     237 ..      45     286 ..      43     302 .. 0.77

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 7.6e-25
                 HHHHHHHHHHHHHHHHTT.SSS---..HHHHHHHHHHHHHHHHHHHHHHTTS-GGG-HHHHHHHHHHHHHHHHHHHHHHHHHH--.....--------- CS
        GCIP   4 klaklvskeaTklsllls.kpelPs..veelqellesifkalsgllliyhglpkgaGatLrkevrsavkevvdsvaqLleeivsse....psqskeeet 95 
                  +a+++++++Tklsll   +p +Ps     l    es++ +l +  l   + p++ +++ ++e  +  k  ++  + L+e++           ++e+++
  KKY17479.1  45 ASASALKAQTTKLSLLAInTPFTPSaiGNVLAAVNESVLPSLVTGTL--LTVPDKFAKSVSSEASTLSKATLRDFKFLVEAVDTRSrlqgDIPDDEKKS 141
                 6899***********99889999993223444445555555444423..34699**************************9999888874444555555 PP

                 ---.--HHHHHHHTTTTS-S.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....S-------------....-----TTS--HHHHHHHHHHHHHHHH CS
        GCIP  96 lis.tGvVWeaCdalkklpk.dNktAilraieevlglvkDaleEmkelleeedeeedededdldddede....ergnqdrklseeekevikavlkllka 188
                 ++  +G +W+ Cd+l  l   +  ++++++  ++  l++Da++E++e+++e +++ d ++d  +dde++     ++++ ++l+++  + +k  + + + 
  KKY17479.1 142 ITEaVGRIWDGCDNLIALGNgGIAGLLVKKALQYQALIQDAINELEEWEPE-RKDDDLFSDAGSDDEQDadgdLDEEEAAELKAQKEQSLKVFRRVPQS 239
                 555*****************99999**************************.67778888887777777344444445555555555555555555555 PP

                 HHHHHHHHHHHHHHH--TT...-HHHHHHHHHHHHHHHHHHHHHHHHHS CS
        GCIP 189 tvallkklsrsiteegkkdskeqvaqldklldlskeiseqvDdLaaslY 237
                 + +++++     ++   + + +q++ ld+l++  ++ se++D+ a +lY
  KKY17479.1 240 IHVIIRSR--LQKRFPPEPTTKQIQNLDRLVSSLETASEAIDEAAGALY 286
                 55555533..233366788889***********************9999 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.9   2.8e-05      0.26     198     272 ..     164     230 ..     155     284 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 2.8e-05
        RRN3 198 ileliverlikiDVeiqveledlddeedeeleeeleededdedddeddeesdlddlssdeeaeedeekdeeeesl 272
                 i  l+v+++++  + iq  +++l++ e e+++++l +d   ++dde+   + + dl+++e ae +   +++e+sl
  KKY17479.1 164 IAGLLVKKALQYQALIQDAINELEEWEPERKDDDLFSD--AGSDDEQ---DADGDLDEEEAAELK---AQKEQSL 230
                 66789999999999999777777777766666555442..2222222...222222222222111...2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2295.28
//
Query:       KKY17480.1  [L=743]
Description: putative dna repair protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-69  232.2   5.0    6.1e-69  231.8   5.0    1.2  1  SMC_Nse1      Nse1 non-SMC component of SMC5-6 complex
    1.6e-44  152.5  18.5    9.3e-43  146.7   9.9    2.1  2  SLAC1         Voltage-dependent anion channel
    6.5e-11   42.4   7.1    1.1e-10   41.6   7.1    1.4  1  zf-RING-like  RING-like domain
     0.0037   17.4   0.0     0.0085   16.2   0.0    1.6  1  AbiEi_4       Transcriptional regulator, AbiEi antitoxin
  ------ inclusion threshold ------
      0.055   13.6   0.0        2.8    8.1   0.0    2.6  2  CtsR_C        CtsR C-terminal dimerization domain
        4.7    7.6   6.9        8.1    6.9   6.9    1.4  1  zf-RING_2     Ring finger domain


Domain annotation for each model (and alignments):
>> SMC_Nse1  Nse1 non-SMC component of SMC5-6 complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.8   5.0     2e-72   6.1e-69       1     194 []     425     613 ..     425     613 .. 0.93

  Alignments for each domain:
  == domain 1  score: 231.8 bits;  conditional E-value: 2e-72
    SMC_Nse1   1 nralLQallargilteeelkkvlaailsae..eevspeditqedleeyiakinealspldyeirsvrhqlgkervyyalVNttsdeetklATtfsaeei 97 
                 nra+LQa+larg+lt+ee++++laai+s +  +evsp+ditq+dl++yi+++n+a+s ld+eirs ++q++++r+ yalVNttsd+ t+lATt+sa+ei
  KKY17480.1 425 NRAFLQAFLARGTLTFEEAQPILAAIFSIQddKEVSPADITQADLSSYISAANTAISTLDLEIRSQTNQSTRQRI-YALVNTTSDSLTQLATTYSADEI 522
                 7***************************9999999************************************8888.*********************** PP

    SMC_Nse1  98 afiKrlldamfetsntrrlevmaitesqavvlelarilaaaraerrstelsqeeaaadkgLtaseaeklLkrLveegWleksreGfysLdlRallEL 194
                 a++Krlld mfet+ntrr e+m+it++qa  ++la+  +a+ ++rr+++ +   a+ +++Lt  +ae++L+rLv+egWleks +Gfy+L+lRal+EL
  KKY17480.1 523 AYVKRLLDFMFETNNTRRTEAMCITSMQA--VQLAKANSAE-SQRRESTGT---AGLSQNLTLRDAESMLERLVDEGWLEKSTKGFYTLSLRALIEL 613
                 *****************************..9999943433.333333333...57889*************************************8 PP

>> SLAC1  Voltage-dependent anion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   1.5     4e-05      0.12       1      21 [.      93     113 ..      93     121 .. 0.88
   2 !  146.7   9.9   3.1e-46   9.3e-43     152     324 .]     118     344 ..     113     344 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4e-05
       SLAC1   1 hftpawFaivMGtgilalllk 21 
                 h+t+a+F+ +M+tg++a++l+
  KKY17480.1  93 HLTWAFFTFTMATGGIANVLY 113
                 89*****************93 PP

  == domain 2  score: 146.7 bits;  conditional E-value: 3.1e-46
       SLAC1 152 gallaesqnpslqllgilvvslllwglGlllalvlfvlylyrlithklppaelrptlfiplGplgqgalallllgkaapk..............aaevl 236
                 +++l    ++ ++l +i++ +++++g+G+l++l++++ ++yrl+t+klp ++lrp++f+ +Gp g+++++ ++++k+a++              +a+++
  KKY17480.1 118 SGQL----SSGRAL-PIIIGGFTIQGVGFLVSLMVYSAFIYRLMTQKLPRESLRPGMFVSVGPSGFTVAGTVNMAKNAKNimpalfmgdtdpqlTATII 211
                 4444....333344.6**************************************************************99******************* PP

       SLAC1 237 kvlalllalflwglglfwllvavlsvls........................................lpv......rlkfslswWaftFPlgalalat 289
                 kv+a +++l+lwgl++++++v+vl++l+                                          +      +++fs+++++f+FP++al++at
  KKY17480.1 212 KVCANWMSLWLWGLAIWFFFVSVLAHLTafiqgtgsddgdlpviksaifgptansqdspnttsdssrsP-RrrwkkpQMSFSMTFFSFVFPNTALVTAT 309
                 *****************************999*999999999888888887777777777766666650.156667799******************** PP

       SLAC1 290 ielgkaleseafkvlgtillvllvlvwllvlvgtl 324
                 +++g a++++a++v+g+++++ll+l+wl+v+vg++
  KKY17480.1 310 FAIGGAFKVPAINVIGCVMTCLLILTWLFVVVGMI 344
                 ********************************986 PP

>> zf-RING-like  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   7.1   3.6e-14   1.1e-10       1      43 []     641     683 ..     641     683 .. 1.00

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 3.6e-14
  zf-RING-like   1 CeaCkeivtqGvrCsnesCnvrlHvdCfqhyirthsskkCpkC 43 
                   C+aC +i+t+G rC++++C vrlH+ C  +++r ++s +Cp+C
    KKY17480.1 641 CKACGDIITMGERCAQRECPVRLHDFCKPNFFRVQQSINCPAC 683
                   ******************************************* PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.8e-06    0.0085      26      48 ..     582     605 ..     579     606 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.8e-06
     AbiEi_4  26 p.salrrLvrkGwLvrlrrGvYal 48 
                 + s+l rLv++GwL++  +G+Y+l
  KKY17480.1 582 AeSMLERLVDEGWLEKSTKGFYTL 605
                 4388******************97 PP

>> CtsR_C  CtsR C-terminal dimerization domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.06   1.8e+02      23      47 ..     426     450 ..     422     466 .. 0.90
   2 ?    8.1   0.0   0.00095       2.8      16      38 ..     576     598 ..     573     602 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.06
      CtsR_C  23 eaiiqrLleegliterEakLmkaal 47 
                 +a++q +l +g +t  Ea+ ++aa+
  KKY17480.1 426 RAFLQAFLARGTLTFEEAQPILAAI 450
                 6899******************998 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00095
      CtsR_C  16 siseqdaeaiiqrLleegliter 38 
                 +++ +dae++++rL++eg + + 
  KKY17480.1 576 NLTLRDAESMLERLVDEGWLEKS 598
                 6899**************99875 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   6.9    0.0027       8.1       2      43 ..     640     683 ..     639     684 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0027
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerw..lrssstCPlC 43 
                 +C  C + ++ ++++ + +C    h  C  ++  +++s++CP+C
  KKY17480.1 640 MCKACGDIITMGERCAQRECPVRLHDFCKPNFfrVQQSINCPAC 683
                 8****99999999999888*86677777666622666666**** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       932  (0.0519828); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.51
# Mc/sec: 4390.55
//
Query:       KKY17481.1  [L=1065]
Description: putative acid trehalase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-36  126.2   0.1    2.6e-36  125.4   0.1    1.4  1  Glyco_hydro_65N  Glycosyl hydrolase family 65, N-terminal dom
    6.4e-28   97.7   2.0    7.2e-24   84.3   0.4    2.3  2  Glyco_hydro_65m  Glycosyl hydrolase family 65 central catalyt
  ------ inclusion threshold ------
      0.013   15.6   0.4      0.086   13.0   0.1    2.6  2  F5_F8_type_C     F5/8 type C domain
      0.021   14.7   0.1      0.063   13.2   0.1    1.8  1  Glyco_hydro_65C  Glycosyl hydrolase family 65, C-terminal dom
      0.036   12.7   0.1      0.057   12.0   0.1    1.2  1  Carn_acyltransf  Choline/Carnitine o-acyltransferase


Domain annotation for each model (and alignments):
>> Glyco_hydro_65N  Glycosyl hydrolase family 65, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   0.1   7.2e-40   2.6e-36       5     227 ..      50     314 ..      46     315 .. 0.78

  Alignments for each domain:
  == domain 1  score: 125.4 bits;  conditional E-value: 7.2e-40
                      ...S--HHHHHHT-EE-SSEEE----TT...TT.--.................-EEETT-EE-T........TSSS-E.....E----EEEEEE CS
  Glyco_hydro_65N   5 fdpeeeglrEslftlGNGylGtRgafee...ey.sd..p..............gtyiaGvYdreiseeanGypeenee.....lvnlpdwlglr 73 
                      +   ++g+++s+ +++NGy+G+++a+ +   ey ++  +              ++++ G++d+++++++ ++p  n+      +  +p+w+g+ 
       KKY17481.1  50 L---DQGHYQSRVSIANGYIGINVAALGpffEYdTPvdGdditewpiftrrqtFATVGGFWDSQPTTNGTNFPWLNQYggesiISGIPHWSGIL 140
                      4...49**********************7665533365166777889999999***********8765555554333211122668******** PP

                      EEETTEE--GGGS..EEEEEEEEEETTTTEEEEEEEEE-TTS.-EEEEEEEEEE-SSSTTEEEEEEEEEESS--EEEEEEEEEETT--B..... CS
  Glyco_hydro_65N  74 lrvdgeeldldeg..eildyereLdlreGvltrsltwrspag.kevrveserfvsladrhlaairlevtplnfsgevevesgldgdvan.ekh. 162
                      l v++  l+ ++   ei++++++Ld+++G++++s++w++++   ++ v++e fv++ ++++a +++++ +   +++v++ ++ldgd+a+ +++ 
       KKY17481.1 141 LQVGDAILNTSTDasEITNFSSTLDVKRGLMNWSFVWTPSGSsASFGVTYELFVHKLHVNQAFVQMSIVAS-SAANVTIFNVLDGDCAVrTDFv 233
                      *****9977744445**********************8766689*************************96.688**************63334 PP

                      ..........EEEEETTSS-EEEEEEEEEEEETTEE--SEE..............SEEEEEEEEEE-TT-EEEEEEEEEEEET CS
  Glyco_hydro_65N 163 .kdprka...levrtresgitvavaartrveasgeklevee..............ekiaqtlsvelkagetvtleKyvavats 227
                       k++  +   ++++++++gi+ ++a  +   +s+ ++++++              ++iaq+++v l+ag++v+++K+v++a++
       KKY17481.1 234 eKGE--DsgmIYSAVSPNGIENVTAFIYAGLQSTVDQNASAariidssetigkneSSIAQSFEVLLSAGKEVNVTKFVGIAST 314
                      3333..1469999999999554444443333333322222255566778888889*************************997 PP

>> Glyco_hydro_65m  Glycosyl hydrolase family 65 central catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.4     2e-27   7.2e-24      18     243 ..     407     619 ..     394     626 .. 0.82
   2 !   13.1   0.0     9e-06     0.032     273     333 ..     619     682 ..     615     697 .. 0.72

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 2e-27
  Glyco_hydro_65m  18 ldvgakGltGegYrGhvfWDtElfvlPlylltepevarnlLeyRynrleaArekAkek..........glkGAlyPwesasdGeEesqelhlni 101
                       +++  Gl  + Y+G +fWD+El++ P + ++ pe+ar + +yR +r+ +Are+ k +              A++ w s++ G  ++       
       KKY17481.1 407 HSISVGGLGSDDYGGMIFWDAELWMQPGLVASFPEAARGIANYRLERFGQARENTKTAyqsskndttfSDDSAVFSWTSGRFG-NCT------- 492
                      358888***********************************************987541111111111234688888888877.555....... PP

  Glyco_hydro_65m 102 rsgewepdaseeeiHvnaaiayavvqYveatgDeefleeeglellvetarfWasraeldkdkgryeidgviGPdEYeenvdnNaytnliaawnl 195
                        g  +    + e+H+n++ia  + +Y+ a+gD++  ee  + +   +a f+ ++ + +    ++ +++v+ PdEY ++vdn ayt  ++  +l
       KKY17481.1 493 --GTGP--CFDYEYHINGDIAQSLANYWVASGDTDRFEEDYFPIYDGIASFYSQLLTKNG--SQWSLTNVTDPDEYANHVDNAAYTMALVSDTL 580
                      ..4444..5589*****************************************9998887..89**********************99999999 PP

  Glyco_hydro_65m 196 elalealeeleeeaeklevkeeelekwekvleklylpideelgviaqk 243
                        a +  + +  e         e   w++ ++++ +  +ee g+  ++
       KKY17481.1 581 ANANKFRSMFAME---------ENSTWSSQSQNVIISRNEEVGITLEY 619
                      9876666555555.........44568888888888888888887765 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 9e-06
  Glyco_hydro_65m 273 gdkvlesqviKQaDvllllyllke..efseeqikanldfYeprt.vhdSslSalvhaivaaelg 333
                      ++ ++ s  +KQaDv+l +y l++  ++++e     ld+Y  +  + +  +  ++++iva e+ 
       KKY17481.1 619 YTGMNGSIDVKQADVVLNTYPLRYetNYTSEDSLNDLDYYAGKQsSSGPGMTYAIFSIVANEVS 682
                      5556667779**********976511677888999*****976514566777788888877765 PP

>> F5_F8_type_C  F5/8 type C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   2.4e-05     0.086       5      56 ..     855     907 ..     851     918 .. 0.79
   2 ?   -2.6   0.0       1.6   5.7e+03      77     103 ..     962     998 ..     951    1003 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.4e-05
                   SSCSSTTTGGGGGGSSSTTSSEEESSSSTTEEEEEEEEEE.EEEEEEEEEECS CS
  F5_F8_type_C   5 sseesgewpaaaaldGnkntaWsssssddkqwlqvdLgkp.kkidgvvtqgrq 56 
                   s++ ++++ +  a+dG ++t+W +ss+++++ l+v+ g++  +i++v +++ +
    KKY17481.1 855 SNTFEPGQFPISAVDGASSTKWQPSSANENASLTVKVGATgERIRAVYFDWGN 907
                   333566667889***********9999999*******8874678888888874 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.6
                   EEEEEE........ECE...EESSSSSSSEEEEEEEEE CS
  F5_F8_type_C  77 Wttvkd........ekv...pgnsdnstpvtntfdppv 103
                   W +v +          +    gn+ ++t+++++f++++
    KKY17481.1 962 WFNVESddlyasdyA-TlmvRGNQAYGTKDEQRFNSSA 998
                   444444444444331.1234999999999999998654 PP

>> Glyco_hydro_65C  Glycosyl hydrolase family 65, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.7e-05     0.063       1      36 [.     757     793 ..     757     805 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
                      ----TT-SEEEEE.EEETTEEEEEEEESSEEEEEEES CS
  Glyco_hydro_65C   1 PrLPeeWdglsFr.lryRGrrLrVrvtpeevtvtles 36 
                      P LP+++  +++r ++++G+ +    + +++t+t +s
       KKY17481.1 757 PSLPPQIPQIRYRtFYWHGWPISAFSNSTHTTLTRLS 793
                      99*******************************9996 PP

>> Carn_acyltransf  Choline/Carnitine o-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.6e-05     0.057     246     329 ..     561     641 ..     548     666 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.6e-05
                      HHHHHHHCSS-EEEE----SS---HCCHHHHHHCTTCGC--TTBSEEEEE-TTS-EEEEE-STT--HHHHHHHHHHHHHCCHCT CS
  Carn_acyltransf 246 eslelIesalfvvcLDdespededeeelakqllhgsgtnRWfDKslqlivtknGkaglnfEHswaDgtvvlrlvedvltdsilk 329
                      e  + +++a+ +++L +++ ++ +   + ++++  + ++ W   s ++i+++n ++g++ E +++ g + ++ ++ vl++  l+
       KKY17481.1 561 EYANHVDNAAYTMALVSDTLANAN---KFRSMFAMEENSTWSSQSQNVIISRNEEVGITLEYTGMNGSIDVKQADVVLNTYPLR 641
                      55678999*******999974444...589999877779******************************999999998876444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1065 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.48
# Mc/sec: 6713.23
//
Query:       KKY17482.1  [L=454]
Description: putative fad dependent oxidoreductase superfamily [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.9e-44  150.9   0.0    8.5e-44  150.6   0.0    1.1  1  DAO             FAD dependent oxidoreductase
    0.00084   19.9   0.0     0.0056   17.2   0.0    2.1  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0082   16.3   0.2      0.018   15.3   0.2    1.6  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.028   13.6   0.1      0.082   12.1   0.1    1.7  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
       0.03   13.2   0.0       0.29    9.9   0.1    2.0  2  Trp_halogenase  Tryptophan halogenase
      0.056   13.4   0.0       0.14   12.2   0.0    1.7  1  NAD_binding_9   FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.6   0.0   2.9e-47   8.5e-44       3     352 .]       4     435 ..       2     435 .. 0.73

  Alignments for each domain:
  == domain 1  score: 150.6 bits;  conditional E-value: 2.9e-47
                 EEECTSHHHHHHHHHHHHT...T..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHH.HHHHHHHSSTTSEEEEEEEEEESSH.. CS
         DAO   3 viiGGGiiGlstAyeLarr...g..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeel.releeelgididyrrtGllslaade.. 93 
                 vi+GGGiiG+stA++L++    +  + ++e+++ +  gaSg ++g+l+  +  +p+ s l  ls+++++el +++++ ++  ++y +++ lsl+ de  
  KKY17482.1   4 VIVGGGIIGCSTAFYLSELvsdPssIHIVESSPTLFAGASGWAGGFLAKDWF-APSVSSLGSLSFALHKELsDKYNGVRN--WGYLPSTALSLGIDEdv 99 
                 9***************987654389*******99888**************8.88777999*******999999998765..***********965434 PP

                 .....HHHHHHHHHHHHHHHTTTTE.EEEEHHHHHHHSTTST.TTSEEEE.ETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEE...TCEEE CS
         DAO  94 .....eelealdkllallleaglda.elldaeevrelepalp.gllgalf.ypdtgqvdpakltaalaraaealGveilegtevtgleeed...gkvwg 181
                      +  e++  l+++ +++ ++   +l+++   ++  + + g+l  +    d++qvdpa+l+++l+++ +++Gv++++ +++t++   +    ++  
  KKY17482.1 100 gvggrQRGEDW-LLQGASRANAAERtDFLNPDGSPAWLTQQKgGTLEVISgKNDCAQVDPAQLCRFLLAESQRRGVQLHQPATATSIAS-NlttQQIES 196
                 44333233444.2333334455544379999878888865334555444438889*******************************933.322233333 PP

                 EEEECT.EEEE.........EEEEEEE--GGGHHHH.HTT.CTT..TSEEEEEEEEEEEE.EECCTHSTGSGCSEEEEE..EEETTTTEEEEEE..... CS
         DAO 182 verttp.gend.........aadavVnaaGawsdll.gll.kel..dlpispvrgqvlvl.kplseklvspaailpvpe..tdddgrgvyvtpr..... 258
                 + + tp  +n+          +++++++aG+w+ ++  +l +    +lpis + g++l l +pl++++  + +  p      +  ++ +++ p+     
  KKY17482.1 197 I-TITPaQINEpsssspitlPVKHLILTAGPWTPKVfSTLfPSSryRLPISSLAGHSLLLrSPLHQPPFDA-PSQPSTNstYIPTSHAIFCAPSpsssi 293
                 3.4444444434566777887789**********55444444444589************77777754443.333333345444455555555555555 PP

                 .........TTSEEEEEESSE.....EETTCSSTSCSHHHHHHHHHHHHHHSGG........G...........CG..EEEEEEEEEE.ETTSSEEEEE CS
         DAO 259 .........kdgrvlvGgtad.....eesgdddpevdeedidellealrklfPq........l...........gd..vlrkwaGlrp.lpdglplige 321
                          + g++++ g  +     +e +++  ++dee ++ l +a+++l+ +        l            d  +++   + rp + +g p+i +
  KKY17482.1 294 lfapelftrATGEIYIAGVNStskplPELATEK-DIDEESVETLKQAAQTLMAAgsqfqsssLsttssppppssTDleIVKVGLCWRPvTSNGTPIISR 391
                 555556666778899866555799998888888.9*****************665666555515555555555544225555558***669******** PP

                 EE.............TEEEEEEEEECTTTHHHHHHHHHHHHHHH CS
         DAO 322 tp.............gvkglylatGhsghGltlapatGkllael 352
                  p             +   +++a+Gh+ +G++l+++tGk++ae+
  KKY17482.1 392 IPdgklggiktggssEGGCVFVAAGHGPWGISLSLGTGKVMAEM 435
                 8899********99855579**********************97 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.9e-06    0.0056       2      35 ..       3      39 ..       2      45 .. 0.88
   2 ?   -0.3   0.0      0.56   1.7e+03      42      69 ..     161     188 ..     144     201 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.9e-06
                EEEECSSHHHHHHHHHHHHTT...SEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelg...kkVtvversdkll 35
                 v+vGgG ig+  A +l+el    +++++ve s++l 
  KKY17482.1  3 TVIVGGGIIGCSTAFYLSELVsdpSSIHIVESSPTLF 39
                59******************96777999999999886 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.56
                 HHHHHHHHHHHTTEEEECSEEEEEEEEE CS
   Pyr_redox  42 askilqeklekngievllntkveeiegs 69 
                 + + l  + +++g++++  +++++i  +
  KKY17482.1 161 LCRFLLAESQRRGVQLHQPATATSIASN 188
                 556667777888*****99999999855 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2   5.9e-06     0.018       1      31 [.       5      38 ..       5      48 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.9e-06
                   EE--SHHHHHHHHHHHCC...TEEEEEE-SSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka...gfdvlllekrdrl 31
                   IvG+G+ G+++A +L++      +++++e+++ l
     KKY17482.1  5 IVGGGIIGCSTAFYLSELvsdPSSIHIVESSPTL 38
                   9***************954447799999998765 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   2.7e-05     0.082     145     178 ..       3      39 ..       1      49 [. 0.86
   2 ?   -2.2   0.0      0.62   1.9e+03     183     214 ..     159     190 ..     136     225 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.7e-05
                  EEEES-SHHHHHHHHHHHHHT-...EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx RF
  Pyr_redox_2 145 ivvvGgGyiGvElAaalaklgk...evtlveardrll 178
                  +v+vGgG iG+ +A +l++l +    +++ve  ++l 
   KKY17482.1   3 TVIVGGGIIGCSTAFYLSELVSdpsSIHIVESSPTLF 39 
                  69*****************977676699999988875 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.62
                  HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 183 kelsaaleealekeGvevklgtsvkeidgnge 214
                   +l ++l ++ +++Gv+++  ++++ i +n +
   KKY17482.1 159 AQLCRFLLAESQRRGVQLHQPATATSIASNLT 190
                  55666777777888888888888877776654 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   9.7e-05      0.29       3      34 ..       4      35 ..       2      43 .. 0.91
   2 ?    0.9   0.0     0.053   1.6e+02     150     176 ..     155     181 ..     136     203 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 9.7e-05
                    EEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S CS
  Trp_halogenase  3 vivGGGtaGwlaAaalakalkgklevtlvese 34
                    vivGGG+ G  +A +l++ +++  ++ +ves+
      KKY17482.1  4 VIVGGGIIGCSTAFYLSELVSDPSSIHIVESS 35
                    9*******************888*******96 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.053
                     EE-HHHHHHHHHHHHHHCT-EEEE--E CS
  Trp_halogenase 150 hldaalyakfLrrvaearGvtrvegkv 176
                     ++d a++ +fL + +++rGv+  +   
      KKY17482.1 155 QVDPAQLCRFLLAESQRRGVQLHQPAT 181
                     8999****************9876544 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.6e-05      0.14       1      36 [.       4      37 ..       4      46 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.6e-05
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsep 36
                   +ivG+G+ G +++  L +    ++p +i++++ s++
     KKY17482.1  4 VIVGGGIIGCSTAFYLSELV--SDPSSIHIVESSPT 37
                   7******************8..**********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 2921.07
//
Query:       KKY17483.1  [L=214]
Description: putative short-chain dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.5e-32  110.6   0.0    7.5e-32  110.4   0.0    1.0  1  adh_short     short chain dehydrogenase
    3.7e-26   92.1   0.0    4.3e-26   91.9   0.0    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    8.9e-09   35.5   0.0    1.1e-08   35.2   0.0    1.1  1  KR            KR domain
  ------ inclusion threshold ------
       0.19   11.1   0.0       0.23   10.8   0.0    1.1  1  DUF1776       Fungal family of unknown function (DUF1776)


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.0   1.7e-35   7.5e-32      26     193 ..       3     165 ..       1     167 [. 0.94

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 1.7e-35
                 EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHH CS
   adh_short  26 kvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfselseeewervievNltgvflltravlpam 123
                 +vv+v+r  ++le+++++  +   ++ ++++D++d +  +++ve a++ +g+ld L+ N ++  ++++++e + e+w+  ++vN+++++ +++a+lp+ 
  KKY17483.1   3 NVVLVSRDGAALEKIKSKYPS---QVQVVPGDLSDFTLPSKAVEVAKSSFGGLDGLIVNHAVlGQVAKIAEADPEKWRGAFDVNVFSAIACVQAALPE- 97 
                 688999999999999999997...5*******************************8887776999********************************. PP

                 HHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTH CS
   adh_short 124 lkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelrek 193
                 l++s+G I  +sS a+ ++ +++ +Y+AsKa +++l+ +l+ e    +i+ +a+ PG vdT+m++++rek
  KKY17483.1  98 LRKSKGCILLTSSGAAVKGTPSWGSYGASKACLNHLALTLQAEEP--NITTMAIRPGQVDTEMQRDIREK 165
                 67***********************************99998865..6******************9987 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.0   9.5e-30   4.3e-26      21     216 ..       4     202 ..       2     213 .. 0.83

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 9.5e-30
                   EEEEESSGGHHHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHH CS
  adh_short_C2  21 vvltdlneeakkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslfllakaalp 115
                   vvl+ ++ +a   +e+++++++++v  ++ D +d +   ++ve ++++fg+lD+l+ n ++  +  ++++e++ e+++ a+dvn+ s++++++aalp
    KKY17483.1   4 VVLVSRDGAA---LEKIKSKYPSQVqvVPGDLSDFTLPSKAVEVAKSSFGGLDGLIVNHAVLGQ-VAKIAEADPEKWRGAFDVNVFSAIACVQAALP 96 
                   6777777776...999*****999555*************************************.9******************************* PP

                   .HCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT..HHHHHHHHH....HHSTTSS-B-HH CS
  adh_short_C2 116 .lmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg..fdelleele....araplgrlgtpe 205
                    l k++g i+ +ss +a +++p+   yga+Ka l++l+ +l  +  + +i+  a+ pg ++T+++++i++   de+ +++     + +  g+l +p+
    KKY17483.1  97 eLRKSKGCILLTSSGAAVKGTPSWGSYGASKACLNHLALTL--QAEEPNITTMAIRPGQVDTEMQRDIREkhRDEMDHKVWstyfNAHKEGKLLRPD 191
                   888888*******************************7665..666779*******************97544444444331111344455566777 PP

                   HHHHHHHHHCS CS
  adh_short_C2 206 evaeaalfLas 216
                   + +++++ L+ 
    KKY17483.1 192 QPGNVMARLVL 202
                   77777766665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   2.5e-12   1.1e-08      27     175 ..       3     149 ..       1     154 [. 0.85

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 2.5e-12
                 EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---E.EEE---------TTT--HHHHHHHHTTTTHHH.HHHHHH CS
          KR  27 hlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikG.vihaAgvlrdklleemtaedleqvlapKvkGa.wnLhel 122
                 ++vl+sR++       a +++++++   +v+vv+ D+sd +  ++++e +k++++ + G +++ A++ + ++++e + e+++ ++   v  a   ++ +
  KKY17483.1   3 NVVLVSRDG-------AALEKIKSKyPSQVQVVPGDLSDFTLPSKAVEVAKSSFGGLDGlIVNHAVLGQVAKIAEADPEKWRGAFDVNVFSAiACVQAA 94 
                 678888884.......345566665489*******************************55688999999******************96651566777 PP

                 TTT..S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE CS
          KR 123 led..esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinw 175
                 l++  +s   ++l+SS a++ g++  ++Y a  a+l+ la + ++++ + +++++
  KKY17483.1  95 LPElrKSKGCILLTSSGAAVKGTPSWGSYGASKACLNHLALTLQAEEPNITTMAI 149
                 7779889999******************************999988777666554 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     5e-05      0.23      80     212 ..      40     166 ..      15     184 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5e-05
     DUF1776  80 valpgakphvlrLkgvilvPslsyptgpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalf 178
                  a+  ak+    L g+i+      ++  i++  +++w+ ++  +++s i+ +qa lp l++    +   i+++ s  +    p  +        l++l+
  KKY17483.1  40 KAVEVAKSSFGGLDGLIVNHAVLGQVAKIAEADPEKWRGAFDVNVFSAIACVQAALPELRK----SKGCILLTSSGAAVKGTPSWGSYGASKACLNHLA 134
                 556666666666777666666666888999999***************************6....5566666666666666777777777888999999 PP

     DUF1776 179 evLkrelrphnidvtqikLGnldlangsqsnski 212
                  +L++e    ni ++ i+ G +d   +   ++k+
  KKY17483.1 135 LTLQAEEP--NITTMAIRPGQVDTEMQRDIREKH 166
                 99999988..999999999998876554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.34s 00:00:00.95 Elapsed: 00:00:00.57
# Mc/sec: 1130.96
//
Query:       KKY17484.1  [L=220]
Description: putative cbf nf-y family transcription [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-18   66.4   0.3      4e-18   65.4   0.3    1.6  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
    8.1e-06   26.2   1.7    1.1e-05   25.8   0.0    2.0  3  Histone        Core histone H2A/H2B/H3/H4


Domain annotation for each model (and alignments):
>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.3   4.5e-22     4e-18       2      65 .]      87     153 ..      86     153 .. 0.93

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 4.5e-22
                    XXXHHHHHHHHHCC.TTXS-..B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF   2 eLPiarvkkImksd.pdark..iakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65 
                    +LP+a+v+kI+ +  p      +akdA++l+ ec++efi+ ++seA++i +ke +Kti+ ehi++A+
     KKY17484.1  87 SLPKATVQKIITEIlPPSSGlsFAKDARDLLIECCVEFITLISSEANDISEKEAKKTIAVEHIEKAL 153
                    7*************965554489******************************************97 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       1.6   1.5e+04      59      76 ..      10      26 ..       5      28 .. 0.68
   2 !   25.8   0.0   1.2e-09   1.1e-05      57     128 ..      83     153 ..      71     154 .. 0.94
   3 ?   -1.5   0.2      0.34   3.1e+03      79      80 ..     183     184 ..     168     211 .. 0.51

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.6
                SXXSXHHHHHHHHHHHH. CS
     Histone 59 dlliqklpfaRvvreivk 76
                d++i+   f+Rv +++ k
  KKY17484.1 10 DFEIP-EIFRRVNKDVEK 26
                55555.348888888865 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 1.2e-09
                 XXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHH CS
     Histone  57 stdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlAr 128
                 + dl  +k+ ++++++ei +  +++l++ ++a ++l e +  +++ + +eAn ++++  ++Ti  ++i+ A+
  KKY17484.1  83 NDDLSLPKATVQKIITEILP-PSSGLSFAKDARDLLIECCVEFITLISSEANDISEKEAKKTIAVEHIEKAL 153
                 789999*************9.************************************************996 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.34
                 SS CS
     Histone  79 ke 80 
                 ++
  KKY17484.1 183 QN 184
                 11 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1245  (0.0694406); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.52
# Mc/sec: 1274.07
//
Query:       KKY17485.1  [L=781]
Description: putative ibr domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-10   40.8  32.0    4.7e-06   26.7   3.9    3.3  3  IBR        IBR domain, a half RING-finger domain
  ------ inclusion threshold ------
      0.022   15.1   6.2      0.022   15.1   6.2    3.9  3  zf-RING_2  Ring finger domain


Domain annotation for each model (and alignments):
>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   1.4      0.19   1.7e+03      43      52 ..     223     232 ..     199     236 .. 0.85
   2 !   26.7   3.9   5.2e-10   4.7e-06      15      58 ..     284     333 ..     271     338 .. 0.70
   3 !   25.4  11.5   1.4e-09   1.2e-05      14      62 .]     352     396 ..     340     396 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.19
         IBR  43 kCgfefCfnC 52 
                 +C++ +C  C
  KKY17485.1 223 DCSHHYCKTC 232
                 5889999999 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 5.2e-10
         IBR  15 dpnlkwCprpdCeaiiekseg....cks...vtCskCgfefCfnCkkewHe 58 
                   ++ +Cp+p C+++i  +      + s    +C+ C++++C  C+ ++H+
  KKY17485.1 284 AGERWYCPSPTCSRFIPRKGFgsglN-SsfqRKCPYCNTKICALCRGAAHA 333
                 45688***********4433334442.234467*****************7 PP

  == domain 3  score: 25.4 bits;  conditional E-value: 1.4e-09
         IBR  14 sdpnlkwCprpdCeaiieksegcksvtCskCgfefCfnCkkewHeglsC 62 
                 +++ ++ C   +C+a++e + gc ++tC+ C+ efC+ C++ w   ++C
  KKY17485.1 352 EQEGWRRCI--KCNAMVELTVGCRHMTCT-CKAEFCYTCGAVWKT-CRC 396
                 24559****..******************.***********9985.555 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   6.2   2.5e-06     0.022       1      36 [.     205     239 ..     205     253 .. 0.82
   2 ?   -4.4   6.6         2   1.8e+04      39      44 .]     315     320 ..     289     342 .. 0.70
   3 ?   -5.3  13.1         2   1.8e+04       9      35 ..     367     393 ..     357     397 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.5e-06
   zf-RING_2   1 deCpICleelssadsvlllpCgHvfhreClerwlrs 36 
                 deC  C+++l   ++++ll+C+H+++++C+ +++++
  KKY17485.1 205 DECISCFDDLPL-NELVLLDCSHHYCKTCFVQLVTT 239
                 69********55.6677777**********997655 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 2
   zf-RING_2  39 tCPlCr 44 
                 +CP+C+
  KKY17485.1 315 KCPYCN 320
                 355553 PP

  == domain 3  score: -5.3 bits;  conditional E-value: 2
   zf-RING_2   9 elssadsvlllpCgHvfhreClerwlr 35 
                 el+ + + +++ C+  f+++C + w +
  KKY17485.1 367 ELTVGCRHMTCTCKAEFCYTCGAVWKT 393
                 4444444445569888*****999853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (781 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2023  (0.112834); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.52
# Mc/sec: 4484.83
//
Query:       KKY17486.1  [L=1417]
Description: putative dead helicase superfamily protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.6e-292  970.9   0.2   5.5e-292  970.6   0.2    1.1  1  Aquarius_N       Intron-binding protein aquarius N-terminus
    3.6e-25   88.7   0.0    7.2e-25   87.8   0.0    1.5  1  AAA_12           AAA domain
      2e-22   80.3   0.0    5.6e-22   78.8   0.0    1.8  1  AAA_11           AAA domain
    2.6e-08   33.8   0.0    3.1e-05   23.8   0.0    2.5  2  AAA_30           AAA domain
      8e-08   32.7   0.0    2.5e-07   31.1   0.0    2.0  1  AAA_19           AAA domain
    3.5e-07   30.4   0.0    1.3e-06   28.5   0.0    1.9  2  ResIII           Type III restriction enzyme, res subunit
     0.0018   17.9   0.0     0.0045   16.6   0.0    1.7  1  UvrD-helicase    UvrD/REP helicase N-terminal domain
     0.0032   17.9   0.0     0.0095   16.4   0.0    1.8  1  AAA              ATPase family associated with various cellul
     0.0059   16.6   0.0      0.056   13.4   0.0    2.3  2  AAA_5            AAA domain (dynein-related subfamily)
     0.0097   15.7   0.1       0.67    9.6   0.0    3.1  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
  ------ inclusion threshold ------
      0.014   15.8   0.2        0.1   13.0   0.0    2.6  2  AAA_16           AAA ATPase domain
      0.057   13.7   0.0       0.21   11.8   0.0    2.0  1  AAA_22           AAA domain
      0.065   13.1   0.2       0.17   11.7   0.2    1.7  1  UvrD_C_2         UvrD-like helicase C-terminal domain
      0.078   13.1   0.5         62    3.8   0.0    4.0  4  PYRIN            PAAD/DAPIN/Pyrin domain
      0.095   12.5   0.0       0.33   10.7   0.0    2.0  1  DEAD             DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> Aquarius_N  Intron-binding protein aquarius N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  970.6   0.2  4.6e-295  5.5e-292       3     797 .]      18     800 ..      16     800 .. 0.97

  Alignments for each domain:
  == domain 1  score: 970.6 bits;  conditional E-value: 4.6e-295
  Aquarius_N   3 edelaklAkkhWlkkkkskkkkvkpevvkkilkeelekekfslkslllLevlqyLEkyLwpnytedasnahvllivlmvnekfrerleawelfedrpee 101
                  d++++lA+k Wl     ++kk +++ +k +l++ l +++fs + l +Le+lq+LEkyLwp+ytedasn hv+li+ +v++k+r +l++welf dr+++
  KKY17486.1  18 GDKWSALADKLWLG----SAKKPTAKDLKPKLWDILDADGFSSRALATLETLQILEKYLWPTYTEDASNFHVILIAAVVSVKQRVHLPIWELFLDRTND 112
                 5899********99....3444555567889******************************************************************** PP

  Aquarius_N 102 fsslfrrvlslsldeslslkertallvFlinaFqSleselvrkevaklvslsiWhnL.seekreeelekspklkkawralkkkydkadeatkaklrfer 199
                 fsslfrrvls++ld sl  ++r  ll+F++ a+qSle+ ++rke+a+lvs+siWh+L s e+re+ le++++++kawra++k+yd+a+e+tka++rfer
  KKY17486.1 113 FSSLFRRVLSMTLDPSLPANSRLFLLSFVTGAYQSLETGIIRKECAPLVSISIWHHLhSVEARERVLENNQSFRKAWRAAAKRYDAAEEETKARIRFER 211
                 *********************************************************999*************************************** PP

  Aquarius_N 200 sflyklildflevleeaeeegeleeekvlyceRflelliDLesqLptRRyvntllkdlhllvairlsklvkdeegklfrqlldlLkfYtkFeiddqtge 298
                 s+ly++ildf+++l++ e+    + e +ly eR+lell+DL+sqLptRRy++ llkdl+ll+ +rls  +++ +++lfr+l++lL+++ +F++d++ ++
  KKY17486.1 212 SWLYSMILDFIRQLSRLEDP---SAEDLLYFERLLELLVDLNSQLPTRRYTHLLLKDLNLLPLLRLSGAYQQPKNGLFRDLVALLDHFLNFPLDEHGSS 307
                 ****************9765...7778************************************************************************ PP

  Aquarius_N 299 qlseeevteahyaklakLqrvalkkfkekLkelaLsnvgsidkreeLekhleaLsdeeleelaallklrtskkpesekleadrkfllevlvskfekrks 397
                 ++++e+++++h+a+l +Lqr+alk+fk kL++laLsn++sid+r+eLe++l+ L+deel++l++ll++rts  p++ +++ dr+++lev++s+fe+ ++
  KKY17486.1 308 EHTSETIRQRHCASLGELQRAALKHFKAKLTVLALSNYSSIDQRSELESQLSVLEDEELVQLCQLLGIRTS-FPKQVEVVPDRRYYLEVIISRFERPAT 405
                 *********************************************************************99.9************************** PP

  Aquarius_N 398 qqeainelpllPtekvlfdenlvrsesydgerpLalpKLnLQfLtlgDyLlRnfnLfrlEstYeirkdiedavkrlkpklkee.getsfeGfsrmalpi 495
                 +q+++ +l++lP e +l+d++l+r+e+ydg+rp+a+pKLnLQ+L+lgD+L+R+++L+r+E+++eirkd+e+avkr++p+++++   ++feGfs+m lpi
  KKY17486.1 406 FQDTVAQLSVLPAEGSLYDPALLRNENYDGSRPVAIPKLNLQYLSLGDFLWRSLVLHRAEAFFEIRKDLESAVKRMRPRMNRDgAVMTFEGFSKMGLPI 504
                 ***********************************************************************************77789*********** PP

  Aquarius_N 496 skfaivevakpkvGekkPsaVraevtldlsrlkeevrreWesLrkhDvvFLlavrpkke.lgekekkkkgekssfaeklglkavRgaevievldeegrv 593
                 +++ai+eva+pkv  +kP+ Vrae++ld+s+l+e++r eWe+Lr++ vvFLl+v  + + +++ +     ++++ + +  +++vR+aev++v de+gr 
  KKY17486.1 505 ARPAIIEVAPPKVSTSKPAFVRAEIMLDMSKLSESIRFEWEQLRPDEVVFLLSVGVNPQsIANGS-----KDRNDTVDWMIQQVRSAEVVQVQDENGRG 598
                 ******************************************************77764233322.....3446788999******************* PP

  Aquarius_N 594 leeaek..kegeekrpkgekrtlrvkLDaaqYkaDlekaakgkedvYetlNvlvRRkakeNnFkavLetirdLmnsdvvvpdWLhdvfLGYGdPaaAtY 690
                 l+++++  ++g+++rp+  +r+l v+LD+++Y  D+eka++ ke vY+++N+lvRR+++eNnFk vLet+++L+ ++  +p+WL++vfLGYGdP++A++
  KKY17486.1 599 LRTQQNghSNGYTTRPR--QRRLLVNLDSTAYDVDAEKAQQAKEIVYSSMNILVRRRGRENNFKQVLETMQRLTAAEARLPHWLQEVFLGYGDPTSAKW 695
                 ***99999999******..******************************************************************************** PP

  Aquarius_N 691 kklpnrlktvdfrDTFldwqHliesfpgkkvepeeevkssfepPyvlefvekkeeaakakkskkrrrdkeeaeekekeeetlkvstykppnrgPYpvda 789
                 ++l+n++  +dfrDTFldw Hl+esfp++ ve+e ++++  +pP+ l++ e ++++ + ++ kkrrrd++e ++ +  ++++kv+ty+ppn+gPYp+da
  KKY17486.1 696 TQLDNKVPAMDFRDTFLDWAHLKESFPERGVEVEGTQTNPLSPPFILHLIEASSSSMTLNPPKKRRRDQAEVTAPT--SSSIKVTTYRPPNTGPYPMDA 792
                 **************************************************999999999**********9887666..889****************** PP

  Aquarius_N 790 pkkNsvrF 797
                 pk+N+vr+
  KKY17486.1 793 PKLNTVRY 800
                 ******97 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.0     6e-28   7.2e-25       1     198 [.    1113    1305 ..    1113    1306 .. 0.86

  Alignments for each domain:
  == domain 1  score: 87.8 bits;  conditional E-value: 6e-28
      AAA_12    1 lerSlferllkkekekvvlLdtqYRmhpeIsr.fpsklfYkgkLkdaesvkkreleaqealeepleplvfidvekseeekekke..ksyiNeeEael 94  
                  le+Slf rl++ +  ++++Ld q R++p+I++ f  ++ + g+L     v+++ ++  +a       + fidv + +   e++   + + N  Eae 
  KKY17486.1 1113 LEQSLFLRLVRLG-VPIITLDRQGRCRPSIAElFTWRYPFLGNLP---AVQEKAEF-LSANAGFCYDYQFIDVPDYQGIGEREPspHFIQNLGEAEY 1204
                  589**********.*****************94455666666665...55555555.555777788899999987776666544559999******* PP

      AAA_12   95 vvklvekllkkgseeerkkigvitpYraqvellkkklkekeeekseke..ievntvdgfQGrekdviilslVRsnekkeigflkderrlNValTRAk 189 
                   v +++++   g+ +  ++i ++++Y+ q+ l+++ l+++ + ++       v tvd++QG+++d+iilsl R+   +++g l+d rrl+Val+RA+
  KKY17486.1 1205 AVAIYQYMRLLGYPA--DNISILATYAGQKALIQDVLQHRCKGNRLFGlpKIVTTVDKYQGEQNDYIILSLTRT---RTVGYLRDVRRLTVALSRAR 1296
                  ********9999999..9********************988887655576679********************9...68****************** PP

      AAA_12  190 skliivGnk 198 
                    l+i+G +
  KKY17486.1 1297 LGLYILGRR 1305
                  *******86 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   4.7e-25   5.6e-22       4     259 ..     802    1103 ..     799    1105 .. 0.72

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 4.7e-25
      AAA_11    4 dsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgneeeri 100 
                   sq eai s  +   +++i GPPGtgKT + +++++ l        ++ +++riL+ a+SN A ++l +++               ++R+g++ee+ 
  KKY17486.1  802 PSQVEAIMSGTQPG-LSVIVGPPGTGKTDVATQIINLL-------YHNFPEERILLVAHSNQALNQLFQKITA------LDIDARHLLRLGHGEEDL 884 
                  57778887776655.6**********************.......2589************************......8889999********655 PP

      AAA_11  101 seavksvsleekvekrlekee...........................kaqlakeiskeleklakelrafeeeeek..................... 149 
                  +++v+ +s   +ve+ le++                            +                                                
  KKY17486.1  885 ETNVS-YSKHGRVESFLENRAgylaevnrmaaslgvqgahgnscetadY--------------------------Fnqvyvqpawakywdivhadat 954 
                  55555.4548888888888767666666444444333333333333330..........................1334444666666777777777 PP

      AAA_11  150 ...........................eklkkskekskskleqerrklkkerkels..keleeaeesleeevldeaeivltTlsgagsklleklak. 216 
                                                k+    +++  ++  + + +e ++++  + l++ +++++  +++ea+i++ T + a+ ++ e ++  
  KKY17486.1  955 tkgqviesfpfhgyfanaphplfddtsS--KEDLIATAAGCQHHISRIFSELEDIRpfEILRQPRDKANYLLIKEARIIAMTSTHAAMRRQEIADLg 1049
                  7777888888888888887777776441..333333333333333333333333332267888888888**********999888876655555444 PP

      AAA_11  217 .kfdvviIDEAaqavEpstliPlrlga..........kkvvLvGDpkQLpatvi 259 
                    +d+v+  EAaq +E++++iP   +           k+vvL GD+ Q  ++v 
  KKY17486.1 1050 fHYDTVVMEEAAQITEIESFIPCAMQRphqitgelplKRVVLCGDHLQNSPIVQ 1103
                  489*******************966666799*****************999986 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   2.6e-08   3.1e-05       2      76 ..     800     877 ..     799     899 .. 0.78
   2 !    7.4   0.0    0.0028       3.3     117     143 ..    1087    1113 ..    1016    1124 .. 0.67

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 2.6e-08
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaa..ggrviglAptgkaAkvLae...elgieastiakl 76 
                 ++++Q +a+ + ++ g  ++v++Gp+GtGKt + +++ +++ ++  ++r++++A++++a ++L +   +l+i+a+ + +l
  KKY17486.1 800 YTPSQVEAIMSGTQPG--LSVIVGPPGTGKTDVATQIINLLYHNfpEERILLVAHSNQALNQLFQkitALDIDARHLLRL 877
                 6788999997666555..9*****************98877777666**************9986222444666666555 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0028
      AAA_30  117 akvilvGDerQlasVeaGgvlrdlvea 143 
                   +v+l+GD+ Q +++ +  ++r+ ++ 
  KKY17486.1 1087 KRVVLCGDHLQNSPIVQNMAFRQYANL 1113
                  79********************99653 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   2.1e-10   2.5e-07       1      78 [.     804     890 ..     804    1097 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 2.1e-10
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal..........l 78 
                 q ea+   ++ ++ +++++pGtGKT v ++i++ll ++   + e+illva  ++A ++l ++++al+ +a+ + rl+            
  KKY17486.1 804 QVEAIMsGTQPGLSVIVGPPGTGKTDVATQIINLLYHNF--PEERILLVAHSNQALNQLFQKITALDIDARHLLRLGHgeedletnvsY 890
                 667886689999***********************9999..559*******************99999988887886544444444440 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.3   6.3e+03      96     118 ..     642     673 ..     624     697 .. 0.72
   2 !   28.5   0.0   1.1e-09   1.3e-06      26      83 ..     816     873 ..     760     919 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.3
                 -................-SEEEEEHHHHHHTH CS
      ResIII  96 a.........kekdstnkkilvttiqsldads 118
                           ++++++n k +++t q+l+a++
  KKY17486.1 642 VyssmnilvrRRGRENNFKQVLETMQRLTAAE 673
                 13333335667888899999999999998876 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 1.1e-09
                 EEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG... CS
      ResIII  26 rglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayk 83 
                   +i+ + GtGKT va+++i  l+++++ee++l+++++++ l+q+ ++++ +  +a++
  KKY17486.1 816 LSVIVGPPGTGKTDVATQIINLLYHNFPEERILLVAHSNQALNQLFQKITALDIDARH 873
                 456999****************************************999887766654 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.7e-06    0.0045       2      68 ..     801     874 ..     800     916 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.7e-06
                    SHHHHHHHHS-SSE..EEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH.......H CS
  UvrD-helicase   2 npeqreaiaslggp..ilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRiee.......a 68 
                    +p+q eai s ++p   +++  +G+GKT v +  i++l+ ++    +ril+v   n+A + l ++i++       +
     KKY17486.1 801 TPSQVEAIMSGTQPglSVIVGPPGTGKTDVAT-QIINLLYHN-FPEERILLVAHSNQALNQLFQKITAldidarhL 874
                    78899999994444226688889******966.589999999.9*********************99865554440 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   7.9e-06    0.0095       3      55 ..     819     866 ..     817     879 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7.9e-06
                 EESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeake 55 
                 ++GppGtGKT +a ++++ l  +f e      l  +v +s++ +++lf+++ +
  KKY17486.1 819 IVGPPGTGKTDVATQIINLLYHNFPEERI---L--LVAHSNQALNQLFQKITA 866
                 79*****************9877665444...4..556888999999988765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.68   8.1e+02      92     134 ..     315     358 ..     312     360 .. 0.82
   2 !   13.4   0.0   4.7e-05     0.056       3      45 ..     818     864 ..     817     915 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.68
                 SEEE..-SSSEEE---......-EEEEEESS--..-TT-TTHHH CS
       AAA_5  92 rrllleeggelvkaknddllerfrviatanpld.rslnelspal 134
                 r+++ +++gel++a+ + +  +++v+a++n  +  +++el ++l
  KKY17486.1 315 RQRHCASLGELQRAALKHFKAKLTVLALSNYSSiDQRSELESQL 358
                 678888999999999987777799***99998887777777665 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4.7e-05
                 EEE--SSSSHHHHHHHGGGGB....S--EEEEE--TT--HHHHH--B CS
       AAA_5   3 lLvGppGtgKselaerlaaal....nreveyvqltrdtteedlkgrr 45 
                 ++vGppGtgK+ +a ++  +l      e      +++   ++l++++
  KKY17486.1 818 VIVGPPGTGKTDVATQIINLLyhnfPEERILLVAHSNQALNQLFQKI 864
                 689******************99555555555556666666776665 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.25     3e+02       2      22 ..     818     838 ..     817     866 .. 0.79
   2 ?    0.2   0.0      0.42     5e+02      86     107 ..    1084    1105 ..    1077    1128 .. 0.78
   3 !    9.6   0.0   0.00056      0.67     184     233 ..    1254    1302 ..    1225    1303 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.25
  Viral_helicase1   2 vvhGvpGcGKStlirkllrts 22 
                      v+ G pG GK+ +  ++++  
       KKY17486.1 818 VIVGPPGTGKTDVATQIINLL 838
                      78899*******999999883 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.42
  Viral_helicase1   86 skaklvilfGDplQipfhsrna 107 
                         +k v+l GD+lQ + + +n 
       KKY17486.1 1084 LPLKRVVLCGDHLQNSPIVQNM 1105
                       56789*********99886555 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00056
  Viral_helicase1  184 evttvhevqGltfdkVtlvllketdlelisesrenllvAlTRhrkslvil 233 
                        vttv   qG++ d  +l l+++ +   + ++   l vAl+R+r +l+il
       KKY17486.1 1254 IVTTVDKYQGEQNDYIILSLTRTRTVG-YLRDVRRLTVALSRARLGLYIL 1302
                       489*********999999999666666.5566999*********999987 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       2.2   2.6e+03     106     132 ..     198     255 ..     139     304 .. 0.53
   2 ?   13.0   0.0   8.6e-05       0.1      21      76 ..     810     864 ..     803     923 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.2
      AAA_16 106 a...........................avpelagaea......srllellkrllallsr 132
                 a                           +  e+++  a      +rllell +l ++l++
  KKY17486.1 198 AaeeetkarirferswlysmildfirqlSRLEDPS--AedllyfERLLELLVDLNSQLPT 255
                 23333333344444444444444444222222222..22244444444444444444444 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 8.6e-05
      AAA_16  21 sgrp.elvllsGesGvGKsslvrellralekd....ggiflrgkcdqlesaipysalaqal 76 
                 sg+  +l +++G++G+GK+ +++++ + l  +    ++++++  ++ l       +l q +
  KKY17486.1 810 SGTQpGLSVIVGPPGTGKTDVATQIINLLYHNfpeeRILLVAHSNQAL------NQLFQKI 864
                 444448899*************98886444433331333333333333......2222222 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00018      0.21       5      33 ..     814     841 ..     810     889 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00018
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeea 33 
                  g+ v++G++GtGKT ++ ++ + l  ++
  KKY17486.1 814 PGLSVIVGPPGTGKTDVATQIINLLY-HN 841
                 6889**************99999882.22 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00014      0.17       4      51 ..    1255    1301 ..    1254    1302 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
    UvrD_C_2    4 altihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTRAreklil 51  
                  ++t+ k QG + +++i+     +   ++    r L +a++RAr  l++
  KKY17486.1 1255 VTTVDKYQGEQNDYIILSLTR-TRTVGYLRDVRRLTVALSRARLGLYI 1301
                  79***************4444.33333444899999*******99997 PP

>> PYRIN  PAAD/DAPIN/Pyrin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.3     0.088   1.1e+02       5      38 ..     321     356 ..     319     369 .. 0.80
   2 ?   -0.2   0.1      0.97   1.2e+03       6      23 ..     358     377 ..     352     404 .. 0.74
   3 ?    3.8   0.0     0.052        62      39      60 ..     570     591 ..     560     592 .. 0.88
   4 ?   -0.3   0.0         1   1.2e+03      41      61 ..     831     851 ..     822     859 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.088
                 CCCCC-HHHHHHHHHHHHH..--SSSHTT.HCCHCT CS
       PYRIN   5 yLeeLseeelkkFKslLkee.eeglksip.rgelek 38 
                  L eL    lk FK +L     ++++si+ r+ele+
  KKY17486.1 321 SLGELQRAALKHFKAKLTVLaLSNYSSIDqRSELES 356
                 5889*************4335667889998888886 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.97
                 CCCC-HHHHHHHHHHH..HH CS
       PYRIN   6 LeeLseeelkkFKslL..ke 23 
                 L  L++eel ++ +lL  ++
  KKY17486.1 358 LSVLEDEELVQLCQLLgiRT 377
                 899*************4432 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.052
                 -SHHHHHHHHHHHHTCCCCHHH CS
       PYRIN  39 adrvdladlLvehygedaavev 60 
                 +dr d++d+++++ ++ ++v+v
  KKY17486.1 570 KDRNDTVDWMIQQVRSAEVVQV 591
                 79**************999987 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1
                 HHHHHHHHHHHHTCCCCHHHH CS
       PYRIN  41 rvdladlLvehygedaavevt 61 
                 ++++ +lL+++++e++++ v+
  KKY17486.1 831 ATQIINLLYHNFPEERILLVA 851
                 6899***********988776 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00028      0.33       1      83 [.     801     878 ..     801     911 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00028
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliig 83 
                 t+ Q eai    + g  ++ ++ G+GKT ++   +++ +y+  + ++ ++l+v+ + +  +q +++++ +    d r ll +g
  KKY17486.1 801 TPSQVEAIMSGTQPGLSVIVGPPGTGKTDVA-TQIINLLYH--NFPEERILLVAHSNQALNQLFQKITALDI--DARHLLRLG 878
                 6889999999999999999***********6.567779997..99999**************9999987765..455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.53
# Mc/sec: 8121.13
//
Query:       KKY17487.1  [L=586]
Description: putative nuclear matrix protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.5e-137  456.9   2.4   9.5e-137  456.6   2.4    1.0  1  efThoc1   THO complex subunit 1 transcription elongation fact
  ------ inclusion threshold ------
       0.02   15.3   0.0      0.061   13.7   0.0    1.7  1  BES1_N    BES1/BZR1 plant transcription factor, N-terminal


Domain annotation for each model (and alignments):
>> efThoc1  THO complex subunit 1 transcription elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  456.6   2.4  1.1e-140  9.5e-137       1     471 [.      93     576 ..      93     581 .. 0.93

  Alignments for each domain:
  == domain 1  score: 456.6 bits;  conditional E-value: 1.1e-140
     efThoc1   1 laalLdlcvhlsenelleatlpfeLledlldlltvdgcrkffdYlesriewfkekgfsykapklelLrscNelLrrlsrpedtvfcgriliFLSklfPl 99 
                 +++lLd+++ +s+nel+e++l+f+L+e+lld++t+dgc  +fdYlesr+e++++k+f  k+++l +LrscNelLrrlsr+edtvfcgr++iFL+++fPl
  KKY17487.1  93 MWNLLDIVSMISDNELCEPGLVFWLIEELLDSQTIDGCGIVFDYLESRRERITAKHF--KQKNLIILRSCNELLRRLSRAEDTVFCGRVFIFLFQSFPL 189
                 69*******************************************************..**************************************** PP

     efThoc1 100 sekSglNlrgefnlenvtefeees.......................eeekeeeeak...............kkkiddnlYkkfWslqkffrnPlqlln 160
                 ++kS++Nlrgef++envt f+e +                       e        k               + ++ d+lY+ fW lq+ f++P++l++
  KKY17487.1 190 GDKSSVNLRGEFHTENVTAFDEHPrqsgpvgamevdvsnvetdkdkqE-------IKsekdandnsstghaaSDVDLDKLYPIFWRLQSSFSAPTRLFD 281
                 **************************************9965444441.......334566666889999999************************** PP

     efThoc1 161 spkfktfekslesvldaflsleeefyreskikkkkkkrralkeklnknskaieekkqeswkefsessfnakyltspkllelqlsDsnFRrqvLlQllil 259
                 s +++ f+++l+++ld+f ++     ++  ik+ ++++  +k+k++         ++e      +s fn+kylts++l+el+++D +FRr+vL+Q+li+
  KKY17487.1 282 STNLQVFKNGLQATLDSFRKIPVSVGSS--IKHGEEASIGQKRKRSP-------GQAE-----FASMFNPKYLTSRDLFELEIHDIAFRRHVLVQALII 366
                 *************************999..99999999999999877.......5555.....589********************************* PP

     efThoc1 260 fqfllslteskeiknf.akvkkksetqvLsdedakwiketekkvyellkefyppkgkkFseivehllsreenwvkwKnegcpefekpavseeelseape 357
                 ++fllslt+s + k +  ++k+  ++++L d++akw+ +t+  v+e+l++ + ++gk+++++v+++lsr++nwv+wK+e+cpe+++ +vs ++ ++a++
  KKY17487.1 367 LEFLLSLTPSAKQKLVnLTNKSVLYSFTLPDDEAKWTASTKLAVAEYLQQ-STSNGKFYYRMVDTVLSRDKNWVRWKAENCPEIQRAPVSIQQQLTAEA 464
                 **********6666667777777777************************.999********************************************* PP

     efThoc1 358 kaekfkkkrlrgfikmGnkeltrlwkietglealkkkerntlpslesylekikleekdeeaekeee.eeaeekkivkqWraLRllrrqslfeFdkvdek 455
                 + ek  +++   + +mG  +  +l k ++gle lk ++   +ps es++++i++++ d e+ ++ee + a+e+++ k W+aLR+++++    ++k+d +
  KKY17487.1 465 SVEKYCQTTDLPR-PMGALNFGFLTK-DSGLEGLKDTDHFRIPSSESFYQGIMADDLDAEMGTDEEmQLAKERREAKIWKALRASSNR-FELCEKIDNN 560
                 9999999555555.************.8*******************************************************76665.59999***** PP

     efThoc1 456 tglkglfdeleseekk 471
                  +lk l+ ++ ++   
  KKY17487.1 561 RNLKALAAQSSDVVTS 576
                 ******9888877655 PP

>> BES1_N  BES1/BZR1 plant transcription factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.8e-06     0.061      25      63 ..     537     576 ..     525     583 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.8e-06
      BES1_N  25 aakilaGlrayGn.ykLpkhcDnNeVlkALcreAGWvVee 63 
                  aki+  lra  n ++L ++ DnN  lkAL+ +   vV +
  KKY17487.1 537 EAKIWKALRASSNrFELCEKIDNNRNLKALAAQSSDVVTS 576
                 48********9998*****************998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3685.30
//
Query:       KKY17488.1  [L=243]
Description: putative sulfonate biosynthesis enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-81  272.5   0.0    3.2e-81  272.4   0.0    1.0  1  ComA      (2R)-phospho-3-sulfolactate synthase (ComA)


Domain annotation for each model (and alignments):
>> ComA  (2R)-phospho-3-sulfolactate synthase (ComA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.4   0.0   1.8e-85   3.2e-81      20     242 ..       1     229 [.       1     230 [. 0.97

  Alignments for each domain:
  == domain 1  score: 272.4 bits;  conditional E-value: 1.8e-85
                 --HHHHHHHHHHHGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT....-HHHHHHHHHHCT-SEEEE--SSS---HHHHH CS
        ComA  20 lglreledlletageyiDglKlgggtsallpeeilrekielahehgvyvstGgtlfEaalaqg....kvdeyleeckelgfdviEvsdgtlelpeeekl 114
                 +g+r+l+d+let+g+++DglK++gg+++l+pe+ lr +i++ahehgvyvstGg ++E++l++      +d+yl +ck+lgfdviE+s+g+l ++e+++l
  KKY17488.1   1 MGKRYLSDVLETMGSHVDGLKFAGGSFSLFPEQPLRGLIDTAHEHGVYVSTGG-WAEHLLTHPdpesVMDRYLSKCKDLGFDVIELSSGFLAFQEDDWL 98 
                 89***************************************************.********9999999****************************** PP

                 HHHHHHCCTTSEEEEEES-SSH........HHHTT.....--CCHHHHHHHHHHHHTECEEEE--TTT--SSTTB-TTS-B-HHHHHHHHTTS-GGGEE CS
        ComA 115 rliekakkeglkvlpevgkkdg........elese.....sdveklieeakrdleaGaekviiEaresGitegvydekgevrtdvvekiierlglekli 200
                 rl++++++ glk++pe+g+++g        +         sd+ kli++a+r+++aG+e+++iE++  Gite+v    +++rtdv+++i+++l++ekl+
  KKY17488.1  99 RLVDRVHSFGLKAKPELGIQFGaggdtaaeD---LdavgtSDPGKLINMAHRFIDAGVERMMIESE--GITENV----KTWRTDVISQIMKALPPEKLM 188
                 **********************999876653...134578**************************..******....********************* PP

                 EE--SHHHHHHHHHHH-TT--EEEEEGGGHHHHHHHHCT-SG CS
        ComA 201 fEApekkqqewfikefGpnVnLgnvdpsevlaLealRlglrg 242
                 fEA+++k+++w+i+efG +VnL +vd+s++++L +lR+g++g
  KKY17488.1 189 FEAADPKVFNWYIREFGIDVNL-FVDHSQIVQLTCLRKGIWG 229
                 **********************.******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1828.06
//
Query:       KKY17489.1  [L=456]
Description: putative xaa-pro dipeptidase app [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-48  165.7   0.0    1.6e-48  165.2   0.0    1.3  1  Peptidase_M24  Metallopeptidase family M24
    1.1e-36  125.3   0.0    1.9e-36  124.5   0.0    1.4  1  AMP_N          Aminopeptidase P, N-terminal domain


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.2   0.0   1.8e-52   1.6e-48       2     208 ..     208     433 ..     207     434 .. 0.91

  Alignments for each domain:
  == domain 1  score: 165.2 bits;  conditional E-value: 1.8e-52
                    HHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTTTCEESSSSEEEEGGGGGSTTTBCSSSB--TTEEEEEEEEEEETTEEEEEEEEE. CS
  Peptidase_M24   2 lirkaariasaaleavleaikpgvterelaaeieattlkrhgarglafppivasgenaavlhytpndrvlkegdlvlidagaeydgyasDitrTv. 96 
                    ++r+a+r + +a+++++++     te+ l+a +e+  ++ +g+ g++f+p+vasg+na  +hy+ nd+vl++++lvl+d g+ y gy+sDitr + 
     KKY17489.1 208 NMRAAGRYSGRAFTEAMRHTPSLQTEAALDAYLEYQ-FRVQGCSGPSFEPVVASGVNALSIHYVRNDDVLHPEKLVLVDGGGSYGGYISDITRAYp 302
                    69***************98778889*********66.8999******************************************************9 PP

                    ECSSGSHHHHHHHHHHHHHHHHHHHC-ST..TSBHHHHHHHHHHHHHHT....TB........CCGBSSCSEEEESSSSSEEEEEESSSTTCSSB- CS
  Peptidase_M24  97 lvGkftpeqrelyeavleaqeaaikavkp..Gvtlseidaaarevlesa....gl........akffphglGHgvGlevhdegpsvsresndgrkl 178
                    + Gkf+ +q++lyea l +q+ +++++++   v+l++++++a++ l+++    g+         + fph+lGH +Gl+vhd     s    ++  l
     KKY17489.1 303 ASGKFSTAQKDLYEAILSVQRSCVSMCREsaKVSLDKLHDIAEAGLKENlkslGFdvsgrdtmSALFPHHLGHYIGLDVHDC-AGFS----RRNNL 393
                    9**************************9545899*************9777777799999999999***************9.6555....3668* PP

                    -TTBEEEEEEEEEEETTT..........E.EEEEBEEEEEE CS
  Peptidase_M24 179 eeGmvftiEpgiyfapge..........g.gvriedtvlvt 208
                     +++++tiEpgiy +p e          g g+ried v v 
     KKY17489.1 394 IANQCVTIEPGIY-VPTEdddrfpvhfrGmGIRIEDSVAVG 433
                    *************.5533456677788877********996 PP

>> AMP_N  Aminopeptidase P, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.5   0.0   2.1e-40   1.9e-36       1     122 [.      30     150 ..      30     151 .. 0.95

  Alignments for each domain:
  == domain 1  score: 124.5 bits;  conditional E-value: 2.1e-40
                 HHHHHHHHHHHS-SSEEEEEE-----EEETTEE------HHHHHHH----SS-EEEEEESSEEEE...EEEE----HHHHHHH----HHHHHHHHHT-S CS
       AMP_N   1 yaerRkrllealpensvvilaagkekyrsgdveypFrqnsdFlYltGfnepdavlvlekeedkkehkstLfvprkdpekelWdGarlgleeakelfgvd 99 
                 ya+rR+rl+++lp+n ++++aa++ + rsg v+y+F+q+ dF+YltGfnep+a +v+ k+ ++++h ++L+v++kdp++e+WdGar+g  +a+++f++d
  KKY17489.1  30 YAQRRSRLAAKLPNNAIAVVAASDIQFRSGGVFYEFHQDPDFFYLTGFNEPEALAVIAKSPHEDDHIFHLYVREKDPKAEIWDGARSGTIAARDVFNAD 128
                 89*******************************************************99666699********************************** PP

                 EEEEGGGHHHHHHHHHTT-SE.E CS
       AMP_N 100 eaepidelesalakllkgsdktv 122
                 e+ ++++l+++l+ ++ + ++ v
  KKY17489.1 129 ETGDVARLKDVLPAVVGEVSQ-V 150
                 ************999987665.5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3126.16
//
Query:       KKY17490.1  [L=263]
Description: putative flavin-nucleotide-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-31  109.6   0.0    1.6e-31  109.2   0.0    1.2  1  Pyridox_ox_2  Pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> Pyridox_ox_2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2   0.0   9.1e-36   1.6e-31       3     141 .]      27     191 ..      25     191 .. 0.93

  Alignments for each domain:
  == domain 1  score: 109.2 bits;  conditional E-value: 9.1e-36
                   HHHHHHHHC-SEEEEEEEETTE...EEEEEEEEEEE.........TTE...EEEEEETTSHCCHCCC.........T--ECEEEEEEEEEEE-SE.G CS
  Pyridox_ox_2   3 eeilalLdegevgrlafvddge...pvilPvnyvvd.........gds...lyfhgakgsrlaaalr.........gapvcvvvtevdglvlars.f 74 
                   ++i+ +++++ v+ ++f + +e   p+ilP++ ++          + +   ly++g+++sr+++ +r         g p++v++t+vdglvl+ + +
    KKY17490.1  27 ATIHGIVNSSAVLNVSFITSPEdtfPAILPMIGQLGsfeypsaglE-EpldLYLQGYVSSRIMNTARsptksggieGFPMTVAATKVDGLVLSLTpN 122
                   789****************555556***********8887776553.0578**********************998889****************** PP

                   G.EEEEEEEEEEEEEEEE--HHHHHHHCCCHHHHHSTTTGGCSB.---CCCCCTEEEEEEEEEEEEEEE CS
  Pyridox_ox_2  75 n.slnyrSVvvrGraeevtdeeekaealellvekivpgrwenlr.pptrkelkatsvlrlkieevsgrr 141
                   + ++nyrS++++G+a++vtd ee+  a++l+++k++p rwen+r pp+ +e+++ts+l+++i + sg++
    KKY17490.1 123 ThDYNYRSAILQGYATVVTDVEERLYAMKLITNKVLPDRWENTRtPPDSAEMSSTSILKMRIVAGSGKI 191
                   *******************************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1822.89
//
Query:       KKY17491.1  [L=220]
Description: putative nicotinamide mononucleotide adenylyl transferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-19   69.6   0.0    3.9e-19   69.2   0.0    1.2  1  CTP_transf_like  Cytidylyltransferase-like
  ------ inclusion threshold ------
       0.14   12.1   0.1       0.31   10.9   0.1    1.5  2  CdiI_3           CDI immunity proteins


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   4.4e-23   3.9e-19      25     141 ..      12     173 ..       1     175 [. 0.87

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 4.4e-23
                      SES.EEEEEESSTHCSST-.SCSSTHHHHHHHHHHH.TTCTTEEEEEEESEHH..........................HHHHHTTTT.EEEEE CS
  CTP_transf_like  25 eed.livgvpsdeppkkkk.kplasaeeRlemlela.kevdevisvdpweltr..........................evlkklkpd.klylv 88 
                      +++  ivg + +++++ +k  +lasae+R++m++la  + +++++vdpwe ++                          e   k+  +  ++l+
       KKY17491.1  12 STEfEIVGGYLSPVSDAYKkAGLASAEHRVAMCQLAiDRASNWLMVDPWEAEQkeyqptavvldhfdheinqvrggietEDGSKK--KvRIALL 103
                      33368899988888888855********************************************999998888886633333333..367**** PP

                      EEHHHHHHHHCHH.....HHHHHHHHHHHEEEEEE............HTTCEEEEEEECCTTTCSHHHHH CS
  CTP_transf_like  89 igadvledfsewk.....eleeilgnvklvvvsrp............ekqanvllkaekrtngiSstkir 141
                      +gad+++++s++      +l++ilg+++  +v+r+            + + n++++++ + n++Sstkir
       KKY17491.1 104 AGADLIQTMSTPGvwapkDLDHILGKFGTFIVERSgtdidealaslqQWKDNIHVIRQLIQNDVSSTKIR 173
                      ********9888899999****************************99999999***************9 PP

>> CdiI_3  CDI immunity proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         1   9.3e+03      48      63 ..      45      60 ..      43      63 .. 0.78
   2 ?   10.9   0.1   3.5e-05      0.31      16      64 ..     151     200 ..     137     203 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1
      CdiI_3 48 ellvplAlevLkedpL 63
                +l++++A + L  dp 
  KKY17491.1 45 QLAIDRASNWLMVDPW 60
                6789999999999886 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 3.5e-05
      CdiI_3  16 rlvekveelrkkpleeltveDlrllirQeiglellvpl.AlevLkedpLa 64 
                 + + +++ +r+   ++ + + +rl +r ++++++l+p  ++e+++++ L 
  KKY17491.1 151 QWKDNIHVIRQLIQNDVSSTKIRLFLRRHMSVQYLIPApVIEYIEQNHLY 200
                 55667888999999999********************7589******994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.49
# Mc/sec: 1361.88
//
Query:       KKY17492.1  [L=1751]
Description: putative ubiquitin-protein ligase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-77  261.0   0.1    5.8e-77  259.2   0.0    1.8  2  HECT       HECT-domain (ubiquitin-transferase)
  ------ inclusion threshold ------
      0.026   14.6   2.6        6.4    7.0   0.0    4.4  4  Arm        Armadillo/beta-catenin-like repeat
        1.8    6.7   7.7        4.2    5.5   7.7    1.5  1  RAP1       Rhoptry-associated protein 1 (RAP-1)
        6.6    5.2   6.4        1.4    7.4   0.1    2.7  4  Adaptin_N  Adaptin N terminal region


Domain annotation for each model (and alignments):
>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.29   1.3e+03     125     158 ..    1250    1283 ..    1205    1286 .. 0.88
   2 !  259.2   0.0   1.3e-80   5.8e-77       3     307 .]    1405    1751 .]    1403    1751 .] 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.29
                  SSTTGGGSB--TTTHHHHHHHHHHHHHTGGGHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT  125 LipnGanipVtnenkkeYiklyvnyllkksvekq 158 
                   +++ +++ V +e+++++i+    ++l++++e++
  KKY17492.1 1250 VVDSDRKVHVVSESVSQFINTKLTAKLNRQLEEP 1283
                  567789999*******************999986 PP

  == domain 2  score: 259.2 bits;  conditional E-value: 1.3e-80
                  HHHHHT-GGGSSE........EESSTTSSSEEE-TTHHHHS.....................HHHHHHHHHHHHHTT--BSS-B-HHHHHHHTT.-. CS
                  xxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
        HECT    3 lskelldpklglf........eeesedsgtlypkpssseee.................llklfeflGkvlGkaiyeeilldlpfsraflkfllg.ee 73  
                  +ske+ ++kl+l+        +         y   +                       l+lf++lGk++++++++++++d++f+++f+++  + + 
  KKY17492.1 1405 VSKEFSKKKLKLWrendssdrD--------EYAFGKLG--LfpapmsddqatqesgkrSLHLFKMLGKFVARSMLDSRIIDVSFNPIFFRLANEkSL 1491
                  7899999999999443333321........22222211..1334555556799999997799***************************99887533 PP

                  ---TCHHHHH-HHHHHHHHHHH..HS-GGG............................GT-BSEEEEETTEEEEEESSTTGGGSB--TTTHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT   74 kitledleeidpelakslkellslesntee.........................vedlaLtFtipenagasatieLipnGanipVtnenkkeYikl 145 
                  k +l  +++id++la+sl ++ ++ + + +                         +edl L+Ft+p   g+   ieLipnG+ni Vt +n+++Y+++
  KKY17492.1 1492 KASLTLVKSIDHDLANSLSQVNQFAKAKASiehdvhlsaiekvqalhaitvhgahIEDLMLDFTLP---GYP-AIELIPNGSNIVVTIDNVDKYVER 1584
                  667788****************99888877999*********************************...9*9.9*********************** PP

                  HHHHHHTGGGHHHHHHHHHHHHTTS-HHHHTTS-HHHHHHHHBCSSS.--HHHHHHTEEEETT--TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT  146 yvnyllkksvekqleaflkGfsevipskalklfdaeelellisGedelidvedlrrnteykggynaesetiewlweilkefspeekrlfLqFvTgss 242 
                  + + +l  +v+kq++af++Gfs v++ ++l++f+++el +l+   +e++++e+l + +++++g+n +s+ +++l+++++e++++++r+fLqFvTgs+
  KKY17492.1 1585 VLDLTLGSGVQKQIKAFQEGFSLVFSYDSLRAFTPSELVMLFGRVEEDWSMETLTDSIKADHGFNMDSKSVKNLLQAMSELDRAQRRDFLQFVTGSP 1681
                  ****************************************9966666************************************************** PP

                  S--TTCGGG-B--EEEEE-S......-TTS--EEEGGGTEEEE---SSHHHHHHHHHHHHHHH.H--XXX CS
                  xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
        HECT  243 rlPlgGfaelhpkftierksk....edetrLPtahTCfnlLklpdYsskeilkekLltAieet.egFels 307 
                  +lP+gGf++l+p ft+++k +    +++++LP+++TC+n+LklpdY++ eil+++L tAi+e+   F+ls
  KKY17492.1 1682 KLPIGGFKSLTPMFTVVCKPSeapyTSDDYLPSVMTCVNYLKLPDYTNLEILRQRLYTAIREGqGAFHLS 1751
                  ******************99999999*************************************5559986 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.36   1.6e+03      15      39 ..     176     206 ..     175     208 .. 0.80
   2 ?    7.0   0.0    0.0014       6.4       5      41 .]     254     290 ..     250     290 .. 0.91
   3 ?    3.8   0.1     0.015        65      13      31 ..     303     321 ..     298     324 .. 0.88
   4 ?   -2.2   0.0       1.1     5e+03       8      24 ..     390     408 ..     388     411 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.36
                 HHHHHHTT......TSSHHHHHHHHHHHHHH CS
         Arm  15 ppLvrLLs......sedeevqeeAawALsNL 39 
                 + Lv+L++       e++e+   A+++++NL
  KKY17492.1 176 KELVALMQpneitgEENPEIMLLACRCIANL 206
                 668888888888788888888889******9 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0014
                 HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   5 kdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                    +++ G++ + +++L+   +++q+ A+++ +N ++
  KKY17492.1 254 PASIVREGGLTACLQFLDFFATGTQRTAVTTAANCCR 290
                 56799*****************************997 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.015
                 HHHHHHHHTTTSSHHHHHH CS
         Arm  13 avppLvrLLssedeevqee 31 
                 ++p+L++ Lss d++v+e+
  KKY17492.1 303 VMPILLNVLSSHDQKVVEQ 321
                 79**************996 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1.1
                 HHHTTHHHHHHHHTT..TS CS
         Arm   8 vieaGavppLvrLLs..se 24 
                 + ++++v+ L + L+  s+
  KKY17492.1 390 LLKMNVVDTLYQILTgvSP 408
                 67899*****999986554 PP

>> RAP1  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   7.7   0.00094       4.2      96     182 ..     935    1027 ..     923    1064 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.00094
        RAP1   96 GsGksrvrsasaaaileeddskddlefkasqsvvktskpksts...teslksssdskskasaksnvks...askyGesssseesatdsskasa 182 
                   + +  + +  aaa  ++  + +dl f  s+  + +++p+st+   + s+ +s ds+ +as+k+   s   +s+ Ge+ss+   a  s++   
  KKY17492.1  935 ARRREALLARMAAARYQDMAAAGDLSFYGSDPRATPTTPSSTRkptSTSKPTSRDSNQSASSKTTRNStrkSSRPGEASSASAPAEPSTEEEG 1027
                  344444556678888999999*******************99733123444577888888887655441114666777777666666655444 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2       0.1   4.5e+02     191     274 ..     128     228 ..     108     260 .. 0.66
   2 ?    6.3   0.0   0.00067         3     357     407 ..     278     332 ..     187     345 .. 0.84
   3 ?    7.4   0.1   0.00031       1.4     132     227 ..     279     387 ..     238     453 .. 0.60
   4 ?   -1.1   0.3      0.12   5.4e+02     109     168 ..     499     565 ..     489     577 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.1
                 HHHHCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH.......HHHHHHHCGGCG......CSSCHHHHHHHHHCCHCCCCST......HHHCCHHCH CS
   Adaptin_N 191 pklvrrLcnllteldpwlqvkiiklltrlarqepeersk.....kellesllnllq......ssnnaVlletvnlivelapkne......livlavnaL 272
                 + l ++L+nl +  +p +q+  ++ +++l     e++ +     + ++++l +l+q        n+ ++l ++++i +l+++        ++  av++L
  KKY17492.1 128 SRLREILNNLRQKDNPNMQLLALEEFSNLLLISNEDNLSgqfspDPYVKELVALMQpneitgEENPEIMLLACRCIANLMEALRgsvanvVYGGAVSVL 226
                 445556666668888888888888888654433333322347778888888888888888888888888888888888887777666666555666666 PP

                 HH CS
   Adaptin_N 273 vr 274
                 ++
  KKY17492.1 227 CQ 228
                 54 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.00067
                 HHHHHHHHHHHHHHS....CCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHH CS
   Adaptin_N 357 ksklvkaIgrlaekf....atdaewvldvllellslsgesvkdeivevirdliqk 407
                  + +v++ ++++ ++     +++++v+++ll++ls+++++v+++ +  + ++i  
  KKY17492.1 278 QRTAVTTAANCCRNIphdsFPVIRDVMPILLNVLSSHDQKVVEQGCLCVTRVIGS 332
                 5778999999**99977777889******************98887777777755 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.00031
                 HHHHHHHHHCCCC....CHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH....HCCCCCCC.HHHHHHHCCHHHHH.....HCS-HHHHHHHHHHH CS
   Adaptin_N 132 kkAalailklykk....dpdllrkqlveeikellsdkdpgvvlaAvalleei....kkndrlll.kllpklvrrLcnll.....teldpwlqvkiikll 216
                 ++A+++++ + ++    +   +r+ +++ + + ls++d++vv       +++    k+ d+ l   + p+l r + +ll     ++    ++++++++l
  KKY17492.1 279 RTAVTTAANCCRNiphdSFPVIRD-VMPILLNVLSSHDQKVVEQGCLCVTRVigsfKHRDDKLEeLVSPDLLRAILRLLlpgttNMIGANIHTEFLRVL 376
                 445555555554432222223344.35566666666666666555555555555555555554444455566655555556555555555555555555 PP

                 CC---SSHHHH CS
   Adaptin_N 217 trlarqepeer 227
                  ++ar  p ++
  KKY17492.1 377 AIVARASPTLS 387
                 55555555555 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.12
                 CCCHHHHHHHHHHHHT-SSH.HHHHHHHHHHHHCCCC.....CHHCCCCC.HHHHHHHCTT-SSHHH CS
   Adaptin_N 109 pelaedlapaikkllkdrsp.yvrkkAalailklykk.....dpdllrkq.lveeikellsdkdpgv 168
                 ++ a +l+p+++++ +++ + +vr+k ++a lk++++       ++lr+  +++ + ++ls++d++ 
  KKY17492.1 499 RRFAMILLPTLTDAYSSTVNlSVRQKVLTAQLKMLSNldtavIGEALRPVpYASFLASILSQQDHSS 565
                 5678899999999999999999*************99777775566688888888888887766543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1751 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1098  (0.0612416); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.08u 0.29s 00:00:01.37 Elapsed: 00:00:00.51
# Mc/sec: 10424.38
//
Query:       KKY17493.1  [L=513]
Description: putative ph domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.024   15.1   0.0      0.045   14.3   0.0    1.5  1  PH        PH domain


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.5e-06     0.045       2     102 ..     298     399 ..     297     402 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.5e-06
                 EEEEEEEEETSSSSC..SEEEEEEEEE.TTEEEEESST.TCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEE.....EESTSSSTEEEEEEESSHH CS
          PH   2 vkeGwLlkkgsgkkk..swkkrwfvLk.dsellyyknd.ksekdkepkgsislsncevvevvatedpkrkfcfel.....riverngsrtyllqassee 91 
                  +eG L +k+ g ++  ++   ++ ++  + l  yk+  +  ++ +p  s+ l +c++  v +     +kf+++      +i   +gs+++ ++a +++
  KKY17493.1 298 LIEGSLERKSRGLGSlkGYSAAYYAVSpAGYLHQYKDNdDFRHEPTPEISLYLPDCTIGAVSD-----TKFTIKGkdvssKI---GGSHEFQFKAHTPS 388
                 5899999999999988877775555552777******98888888889999999999998754.....33333332211122...3369********** PP

                 HHHHHHHHHHH CS
          PH  92 erkeWikaiqs 102
                 ++k+W   i++
  KKY17493.1 389 DAKTWHDIISQ 399
                 *****988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       968  (0.0539907); expected 358.6 (0.02)
Passed bias filter:                      596  (0.0332422); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 3136.93
//
Query:       KKY17494.1  [L=363]
Description: putative carbon catabolite repression protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-20   74.2   0.0      2e-20   73.6   0.0    1.3  1  Arrestin_C  Arrestin (or S-antigen), C-terminal domain
      4e-10   39.9   0.0    6.8e-10   39.2   0.0    1.4  1  Arrestin_N  Arrestin (or S-antigen), N-terminal domain
  ------ inclusion threshold ------
       0.12   12.0   0.0       0.23   11.2   0.0    1.4  1  LDB19       Arrestin_N terminal like


Domain annotation for each model (and alignments):
>> Arrestin_C  Arrestin (or S-antigen), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.0   3.3e-24     2e-20       1     133 [.     180     330 ..     180     331 .. 0.90

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 3.3e-24
                 ----EEEEEEES-SEEETT--EEEEEEEE.E-SSSEEEEEEEEEEEEEEEESS........SEEEEEEEEEEEEE---.......B-TTEE.EEEEEEE CS
  Arrestin_C   1 wdgkvsleaslpkkgyvpGetipvtvkid.ndskkkvkkikvslvqhvdvcafnr......snkkeknvvaksdsvkv.......tsaakdkletevel 85 
                 w++k+++++s+p+k++v+G +++v + +   ++++++  i+ ++++ +d++   +      +n + ++vva++++v           ++ + ++++ +l
  KKY17494.1 180 WPNKIEYSISTPSKAVVFGTSVRVDFRLIpLLKGLRIGTISSQVIESHDFTLDPDvvqsysNNYRHTKVVATDEYVMDesadpqiLDEEAEGYQLTRQL 278
                 99***************************77**********************99*****988899999999888777889999955555568888*** PP

                 .----B--...---S---EEEEEEEEEEEEEEE...SSEEEEEEEEEEEEEB-- CS
  Arrestin_C  86 qiPeeltp...ssarnvelikvsYklkvkltls...gsggelslelPivlgsvp 133
                 ++P+ l +   ++  ++++ikv++klk++++l    g+ +el+++lPi l+ +p
  KKY17494.1 279 ELPKTLNKclqDT--DTRGIKVRHKLKFNVQLHnpdGHTSELRATLPIALFVSP 330
                 ***8888886455..9*****************9876889**********9887 PP

>> Arrestin_N  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   1.1e-13   6.8e-10       1     144 [.      16     164 ..      16     166 .. 0.91

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 1.1e-13
                 EEEEES-SEEEEETT......--EEEEEEE-CCCCTT.CEEEEEEEEEEEESSSSTTTTCCCEEEEEEEEEEEEESTSSSSS.SSSSHHHHHHHH-TTE CS
  Arrestin_N   1 vtieldkrdevyhpg......etvdGkvlleteelkkarkvkielsgkartgweesevagktfrkdltlkkkqeyleteksllkskkdsqekLpkGeha 93 
                 ++i+ld++  v++ g        ++G+v+   +e+++++  +++l+g  r+gw  + +a++    ++t k++ +++e++ s + + k+ +e L+  +++
  KKY17494.1  16 FDIRLDSPYVVFRGGeseaasAHLKGSVVCCVTEPLTVKHFRLTLNGISRVGWY-LPSANSVGGLRKTWKER-TFFEHTWSFVDPGKGKTEHLKPDNYE 112
                 689999999999999776655679*****************************9.77777777777777765.9************************* PP

                 EEEEE---TTS--SECSGE.EEEEEEEEEEEECCCE--C.CCEEEEEEEEEE CS
  Arrestin_N  94 fpFsfelPknlpsSfeGka.ggvrYevkvtldrpwkidkkkkkvftVirkld 144
                 fpF + l   lp S+eG +   v Y +k+++ r++  d   +k + +ir+ld
  KKY17494.1 113 FPFDIVLEGTLPESVEGLHdTWVIYRFKAEIGRKYSKDIVVRKPLRIIRTLD 164
                 *****************88366***************************998 PP

>> LDB19  Arrestin_N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.8e-05      0.23      43      88 ..     102     145 ..      83     189 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.8e-05
       LDB19  43 ntkdlkvGsysyPfsylipGslpassslgsnaetkvkyeliavvvy 88 
                 +t++lk+ +y++Pf +++ G+lp s++      t v y + a +  
  KKY17494.1 102 KTEHLKPDNYEFPFDIVLEGTLPESVE--GLHDTWVIYRFKAEIGR 145
                 799*********************999..55677788888776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2410.34
//
Query:       KKY17495.1  [L=395]
Description: putative catabolite repression protein crec [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2602.10
//
Query:       KKY17496.1  [L=2486]
Description: putative ubiquitin c-terminal hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-56  189.5   0.0    1.6e-55  188.4   0.0    1.6  1  DUF3517   Domain of unknown function (DUF3517)
    1.8e-36  126.0   0.1    3.1e-36  125.2   0.1    1.4  1  UCH       Ubiquitin carboxyl-terminal hydrolase
    6.9e-20   71.9   1.3    4.3e-19   69.3   1.3    2.3  1  UCH_1     Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> DUF3517  Domain of unknown function (DUF3517)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.4   0.0   2.7e-59   1.6e-55       1     306 [.    2096    2391 ..    2096    2406 .. 0.93

  Alignments for each domain:
  == domain 1  score: 188.4 bits;  conditional E-value: 2.7e-59
     DUF3517    1 yFglllslaklGreevaalLeegfLlklleiiaaDtedek..lksqYarmlrlverrlsnRppsyekiieLldvLLerldlelelgeepveeaeerl 95  
                  yFgll+++++l + +++++L+++fL+++l  +++D  +++  ++ +Y ++lr  e++   Rp+sy+++++Ll++LL+ +dl+++     v++++e +
  KKY17496.1 2096 YFGLLCKITTLDSVKAGVVLDHDFLERCLSLVWLDIPEDPgdIRASYPTLLRWKEKG---RPFSYQAMMDLLANLLQCIDLTAP-----VNDEHE-V 2183
                  9**********************************877777****************...*******************99988.....555444.4 PP

     DUF3517   96 elsegkfpltseEvdllr.lerereqelifveklleidqnpeatrsIikrLlklspeleekilktLeegirgepatlavdPfLraalvFcersesee 191 
                   +  +k++l ++E++llr   +e++ +l ++++ ++   n  a  ++i+ L+  ++e  ++ + t+++g++ ep+ la  PfLra+lvFc+ s++++
  KKY17496.1 2184 YD--RKYSLVKSEMNLLRdPVDENTLVLPWLNRCISKGYNWSANSRLIEILAL-EDEWSRCAYATIADGLEEEPSYLAR-PFLRATLVFCQCSPEQQ 2276
                  44..47************77777778**********************99876.9999*******************99.***************** PP

     DUF3517  192 rvqsLirhvakqvrslqnseGrefLeFfkellelnerssgeeeedflslvlenipdWaPtLLgypdeavrseteefLqekLfsk.eeseeaedeaea 287 
                   v +L +++++ v+++ +  Gre ++F++ l +l + ++g ++e f  ++++++ +WaP LL+y+++a+r+e++++L+e ++++ +++ee  +e + 
  KKY17496.1 2277 LVVRLAQKALDAVETIGDYAGRENVNFIRCLSDLDNLACGFSQEHFRKVITNRVTKWAPALLMYKERAIRAEAVQLLDEYVLDHlTTDEEITEEVAD 2373
                  **********************************9999**********************************************8888888888888 PP

     DUF3517  288 rlkeiareLgiacleylre 306 
                   +  +ar++++a  ++ +e
  KKY17496.1 2374 -FMALARAIAVAICDKFNE 2391
                  .888999999997776655 PP

>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.2   0.1   5.2e-40   3.1e-36       2     257 .]    1573    1886 ..    1572    1886 .. 0.83

  Alignments for each domain:
  == domain 1  score: 125.2 bits;  conditional E-value: 5.2e-40
                  EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHHSH-CCEE--HHHHHHHHHHSGG.GTSSST CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
         UCH    2 GlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkellkskskavsPkklkktlsklaks.fsgykq 97  
                  Gl+Nl ntCy+ns+   L++  ++r+++l+l     +s++              +l+ +lk+lf+ ++ s ++++ P  ++++++++ +  + +  q
  KKY17496.1 1573 GLRNLSNTCYLNSLFTHLYMNLHFREFILNL-----DSQE--------------RLLIELKKLFAFMQSSYNRCIDPIGVVECIQTYDNVaIDITIQ 1650
                  9*****************************3.....3333..............499***********99****************9887799**** PP

                  CEHHHHHHHHHHHHHHHHCC...................HCCCHHHHHHCCCTTSHHHHHH-EEEEE.............................. CS
                  xxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................. RF
         UCH   98 qDaqEflaflLdqlhedlnr...................evaeekwkkhlkrndslitdlfegqlks.............................. 145 
                   D+ Ef + l+d+l+ ++                     +                          s                              
  KKY17496.1 1651 MDVDEFYNLLFDRLEAKMPTpelkasfrsiyggqlvqqiK--------------------------Skecehvserlepfsaiqcdirgkldleesl 1721
                  ******************9955555555544444444331..........................1333335555555555556666666669999 PP

                  ............................EEEEEEB-SEEEEEEESEEETEE...EEE--SEEB--SEEE-GGGBSS-BTTS..-TCS-BEEEEEEEE CS
                  ............................xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
         UCH  146 ............................klklkrlPeiLiihlkRfsynss...ksKlntkvefpeeldlssylaeekkkk..teekkkYeLiavvv 209 
                                              +  lk +P+ Li+hlkRf ++ +   ++K+n+++ fp ++d+++y+ + ++ k   ++   +eL++v++
  KKY17496.1 1722 rayvegevmqgdnkyscsrcnqhvdavkRACLKDVPDHLIFHLKRFDFDINtmtRRKINDEFAFPNSIDMAPYTLDTVAVKggSTSPDMFELVGVLI 1818
                  9999999999*****************9********************888889*******************9987655411566677******** PP

                  EESCTTSEEEEEEEE.....CTTTTEEEEEETTEEEEE-HH...........CCCTT.....CEEEEEE CS
                  xxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxx...........xxxxx.....xxxxxxx RF
         UCH  210 HsGslssGHYvayik.....nekngkWykydDetvkevkee...........eevls.....sayiLfY 257 
                  HsG+++ GHY+++i+     ++++++W++++D  v   ++e           +++ +     say+LfY
  KKY17496.1 1819 HSGTAETGHYYSLIRerpssSDAKNSWLQFNDADVLLFEHErlrefcfggfdTTL-NtpkvwSAYMLFY 1886
                  ************99966665555666************98888888888885333.35889******** PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   1.3   7.1e-23   4.3e-19       1     320 []    1572    1853 ..    1572    1853 .. 0.80

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 7.1e-23
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1    1 sGLEnhivnsYlNslLQvlyfipplrnlalshlakeckkehcLlcElgflfdmldkakglncqasnFlralssipeasalglileeeeetekssais 97  
                  +GL n  +++YlNsl   ly+  ++r+++l+       ++++Ll El  lf  ++ + ++ +     ++++++   + a+ +  +            
  KKY17496.1 1572 AGLRNLSNTCYLNSLFTHLYMNLHFREFILNLD-----SQERLLIELKKLFAFMQSSYNRCIDPIGVVECIQTYD-NVAIDITIQM----------- 1651
                  7**************************999855.....7789*************99987777777777777776.6666665443........... PP

                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   98 lssliqsfnrflldqlekelketkknsseeesaieqllgtkaettirclkCgseksrksstlvldlkyPkpsnekkeakvtfasilksslerekttr 194 
                      +++f + l+d+le +  + +    e ++++ +++g +++++i++++C++ ++r + +  ++         k + + ++  +++  + +  +++
  KKY17496.1 1652 ---DVDEFYNLLFDRLEAKMPT-P----ELKASFRSIYGGQLVQQIKSKECEHVSERLEPFSAIQCDI----RGKLDLEESLRAYVEGEVMQ-GDNK 1735
                  ...3457**********99655.3....477889***********************99999986633....22344556677777777777.999* PP

                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  195 awCekCkryqpteqrktvknlPpvLalnakle.ee...eelelwktknwlpleiklsldedknleeklkeerekakaekeikvYeLqsvvvhigdsk 287 
                  + C++C++     +r  +k++P+ L++++k++  +    +++  +++  +p++i++  +  +        + + +  +++  ++eL++v +h g+++
  KKY17496.1 1736 YSCSRCNQHVDAVKRACLKDVPDHLIFHLKRFdFDintMTRRKINDEFAFPNSIDMAPYTLD--------TVAVKGGSTSPDMFELVGVLIHSGTAE 1824
                  ******************************98666543344555557889999999444322........222244567789************666 PP

                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  288 esghLvslvkvaekelerdppesqWylFNDflV 320 
                    gh++sl++  ++    ++++++W+ FND +V
  KKY17496.1 1825 -TGHYYSLIRERPSS---SDAKNSWLQFNDADV 1853
                  .9********77765...46899*******887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.20u 0.33s 00:00:01.53 Elapsed: 00:00:00.55
# Mc/sec: 13492.94
//
Query:       KKY17497.1  [L=696]
Description: putative mfs phospholipid transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-62  209.5   0.6    6.7e-62  208.9   0.6    1.3  1  PEX11     Peroxisomal biogenesis factor 11 (PEX11)
    1.9e-37  129.2  23.9    2.7e-20   72.7   7.4    2.1  2  Sugar_tr  Sugar (and other) transporter
    6.9e-17   61.4  36.2    6.5e-09   35.2  20.6    2.3  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.11   13.0   3.7       0.14   12.6   0.4    2.9  3  PEMT      Phospholipid methyltransferase


Domain annotation for each model (and alignments):
>> PEX11  Peroxisomal biogenesis factor 11 (PEX11)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.9   0.6   1.5e-65   6.7e-62       8     223 .]     473     692 ..     472     692 .. 0.97

  Alignments for each domain:
  == domain 1  score: 208.9 bits;  conditional E-value: 1.5e-65
       PEX11   8 laqtqgrDKllRalqYasrllayllerkgsskelvkklkklesqfslsRKllRlgkflehlqaaaklldnkle........dpvlrllavlrnlgyalY 98 
                 +++++grDKllR+lqY++r++a++l r+++ ++++++++++++qf+l+RK++R gkf+eh++aaa l+d  ++        +++l++l+vlr+lgy++Y
  KKY17497.1 473 TNTMVGRDKLLRTLQYFARFYAWYLLRTNRPSTSIAPWSTIKTQFGLTRKIMRAGKFVEHFKAAATLYDAPPNtktltlssENILKYLGVLRQLGYGFY 571
                 5899****************************************************************944444589999******************* PP

       PEX11  99 lllDhvlwlkklgllkvknakklsrlssrfwlfglvlslvrdlyelrllqekekklkkekkekeereeeklaavlkkrpallldlvknllDllialnel 197
                 l++D +++ ++lg+ k ++ak ++++++++w++gl+++ v+ +y+l+ll+++e++l+k   e+e+  e+k  +++++r a+ l+l+++++Dl+++ ++l
  KKY17497.1 572 LTFDFLTLPDALGVKKWSKAKEMQQRAYKAWFIGLAANAVAGAYTLWLLRAREAALNK--HEGESVVEAK--KIERQRAAAQLQLLSDACDLTVPSSAL 666
                 *******************************************************998..8999999999..*************************** PP

       PEX11 198 gilklsdgvvGlaGliSSllgllqlw 223
                 g+ +l+dg+vGl+G++SSl+g++ +w
  KKY17497.1 667 GYTNLDDGIVGLSGTVSSLIGVWATW 692
                 ***********************999 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   7.4     6e-24   2.7e-20       4     193 ..      37     232 ..      34     240 .. 0.89
   2 !   64.0   7.3   2.7e-21   1.2e-17     244     449 ..     245     459 ..     233     462 .. 0.86

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 6e-24
                 HHHHHH.HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT.. CS
    Sugar_tr   4 vaalgg.llfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk.. 99 
                 +a+ +g +  gY  gvig++ t+l++++   ++ + + k         i si+++G ++G l++g l+d+++Rk+sl+i++ ++++ a+l+a + g+  
  KKY17497.1  37 IACGAGlFSDGYINGVIGSVNTILEAIYGDRFKDAPQRK--------NINSIAFAGTVVGMLVFGVLSDYWSRKWSLMISTCILIVFAALSAGSFGAgg 127
                 5666677899***************99999999888755........59**********************************************9999 PP

                 ...SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHH....HHHHHHHHHHHHHHHHHHHHHHH.HTSS-...TTHHHHHHHCCHHHHHHHHHH CS
    Sugar_tr 100 ...nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRga....lvslyqlaitfGilvaaifglgl.nktsn...adgwrillglqlvpallllil 187
                     ++ +l++ R+l+Gig+G+++   ++ ++E + + +Rg     +v+++++ i +G+l ++ + ++l   +++   +  wri lgl ++p+l l++l
  KKY17497.1 128 sfgGMLAALTAYRFLIGIGIGGEYPAGSVAAAESTGELKRGHrnrwFVMFTNFQIDLGFLASTLVPMILvLICTDkhlRAAWRIALGLGVIPPLSLFYL 226
                 999999999999***********************777777533337889999999******999999955555589999******************* PP

                 GGGS-- CS
    Sugar_tr 188 llflPE 193
                 +l l E
  KKY17497.1 227 RLKLNE 232
                 **9988 PP

  == domain 2  score: 64.0 bits;  conditional E-value: 2.7e-21
                 THHHHSH....HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH....HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH.. CS
    Sugar_tr 244 ellsskt.vrqrlligvvlqifqqltGinaimyysptifenlglsks....llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgiv 337
                 +++  ++ + +rl+++ +++++  ++++ + +y s  +   lg s +    l ++ +v++       +++f++d fG R++l  G++++ ++ +i++  
  KKY17497.1 245 PYWLIIKfYWWRLFVVSLIWFIYDFSTYSFSIYSSAWLKTILGDSYPlwvsLGWSTLVYAFYLPGATIGAFTSDWFGPRYCLAGGVFVQGVVGFIMT-G 342
                 5666677799*****************8777777777777777777755555566666666666667788**************************9.8 PP

                 HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH......T-HHHHHHHHHHHHHH CS
    Sugar_tr 338 alllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaig......ggyvflvfaglavlfi 430
                 ++ + ++      +++v++ +f+al ++g+g  + +++s ++ ++vR+  + ia+a+  +  f+ ++lfp i+ea g      g   f+v  +l+++++
  KKY17497.1 343 CYKYLNTP-DNVAGFVVLYGIFLALGEIGPGDNIGLIASKTSATAVRGQYYGIAAAMGKVGAFVGTYLFPLIVEAAGddevkaGQDPFYVSSSLCIFSA 440
                 88888886.566677777788999*********************************************************999999************ PP

                 HHHHHHS--STT--CCCCG CS
    Sugar_tr 431 ifvfffvpetkgrtleeie 449
                 +  +f +p+    t+ee +
  KKY17497.1 441 FLALFLLPHIGQDTIEEED 459
                 *********9999999865 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2  20.6   1.5e-12   6.5e-09      37     241 ..      77     289 ..      41     297 .. 0.68
   2 !   29.6  10.2     7e-11   3.1e-07      34     189 ..     296     469 ..     279     530 .. 0.72

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.5e-12
       MFS_1  37 lltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllll.fa.....sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraiglls 127
                 + ++ ++g++v++l++G+lsd ++r++ l+++  +++++ +l +  f+      ++  +l + r+l G+g g+ +pag +++a+ + + +rg  + ++ 
  KKY17497.1  77 INSIAFAGTVVGMLVFGVLSDYWSRKWSLMISTCILIVFaALSAGsFGaggsfGGMLaALTAYRFLIGIGIGGEYPAGSVAAAESTGELKRGHRNRWFV 175
                 5688899********************777777777777244444884454565566689***********************************9999 PP

       MFS_1 128 agfslGailgpllgg.......llasslgWravfyilaivsllafv.lfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwillialll 218
                 +++++ + lg l++        l+++    ra++ i+ +++++  + lf+l l  ++pe+ +    ++          p w +++     w l++++l+
  KKY17497.1 176 MFTNFQIDLGFLASTlvpmilvLICTDKHLRAAWRIALGLGVIPPLsLFYLRLKLNEPEEYNRQRMTK---------YPYWLIIKFYW--WRLFVVSLI 263
                 97776666665444433333325555555666666666666666555555666666666666555555.........35666666555..666666666 PP

       MFS_1 219 fffgfsg....lltllplylqevlgls 241
                 +f ++ +    +++++  +l++ lg s
  KKY17497.1 264 WF-IYDFstysFSIYSSAWLKTILGDS 289
                 65.444435557777666777777755 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 7e-11
       MFS_1  34 igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..f..a...sslw.lllvlrvlqGlga.galfpagaaliadwfpkeergrai 123
                 +g+  tl++++++ ++ ++++ sd fG+r +l  g+++ ++ +++++  +       ++  ++++  ++ +lg+ g +  +g+++    ++   rg+++
  KKY17497.1 296 LGW-STLVYAFYLPGATIGAFTSDWFGPRYCLAGGVFVQGVVGFIMTgcYkyLntpDNVAgFVVLYGIFLALGEiGPGDNIGLIASKTSATA-VRGQYY 392
                 566.6778888*******************************88888674442457889989999999999999777777777777777776.****** PP

       MFS_1 124 gllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee.....k 189
                 g+++a+  +Ga +g  l +l+++++g       + +fy+   ++++++ l+l+llp    +   +++++ +     +
  KKY17497.1 393 GIAAAMGKVGAFVGTYLFPLIVEAAGddevkaGQDPFYVSSSLCIFSAFLALFLLPHIGQDTIEEEDIKFRaylerN 469
                 **************************9**9998999***********997666664333333333333333333331 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.8     8e+03      66      86 ..     246     267 ..     231     274 .. 0.61
   2 ?   12.6   0.4   3.1e-05      0.14      41      72 ..     337     368 ..     299     371 .. 0.83
   3 ?   -1.7   0.0      0.87   3.9e+03      22      65 ..     396     439 ..     391     444 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.8
        PEMT  66 laLitgsaag.lllallvllvy 86 
                 + Li +++++ l+++ l++++y
  KKY17497.1 246 YWLIIKFYWWrLFVVSLIWFIY 267
                 5677777776544444444443 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.1e-05
        PEMT  41 klvtsGiYrylnnPeyvgstlgflGlaLitgs 72 
                   + +G Y+yln P+ v+++++++G+ L+ g 
  KKY17497.1 337 GFIMTGCYKYLNTPDNVAGFVVLYGIFLALGE 368
                 67889***********************9876 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.87
        PEMT  22 ealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstlgflG 65 
                  a+g+ g f+g++ ++l  +   +   +  ++P yv s l+++ 
  KKY17497.1 396 AAMGKVGAFVGTYLFPLIVEAAGDDEVKAGQDPFYVSSSLCIFS 439
                 56666666666666554433333333333445666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.50
# Mc/sec: 4191.06
//
Query:       KKY17498.1  [L=600]
Description: putative phosphoenolpyruvate carboxykinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-216  719.9   0.0   1.4e-216  719.7   0.0    1.0  1  PEPCK_ATP  Phosphoenolpyruvate carboxykinase
     0.0086   16.5   0.0      0.016   15.6   0.0    1.4  1  AAA_16     AAA ATPase domain
  ------ inclusion threshold ------
        0.2   11.8   0.1       0.39   10.9   0.1    1.5  1  AAA_33     AAA domain


Domain annotation for each model (and alignments):
>> PEPCK_ATP  Phosphoenolpyruvate carboxykinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  719.7   0.0  2.3e-220  1.4e-216       3     464 ..      87     552 ..      85     553 .. 0.99

  Alignments for each domain:
  == domain 1  score: 719.7 bits;  conditional E-value: 2.3e-220
                 EEES--HHHHHHHHHHTTS.-EE-TTS-EEE--TT--S--GGGEEEE--TTTTTTS-BTTTBEEE-HHHHHHHHHHHHHHHHTS.-EEEEEEEE-SSTT CS
   PEPCK_ATP   3 virnlsvaeLveealkree.gkltstgalvvetgkktgRspkdkfiVedeetedkiwWgkvnkpiseekfealkekvleylkek.elyvvdafagadpk 99 
                 ++ n+sv++L+e+al  e+ + +ts+gal++++g+ktgRsp+dk++V+++++e+++wWg vnkp+s+e ++ ++e++++yl+++ ++yv+d+fag+d++
  KKY17498.1  87 IVANPSVSALYEDALVYETgSAITSSGALTAYSGAKTGRSPSDKRVVQEPSSEKDVWWGPVNKPMSPEVWKINRERAVDYLNTRnRIYVIDGFAGWDER 185
                 789**************99899**************************************************************9************** PP

                 T-EEEEEEES-HHHHHHHHHHSBGGS-S-TTT---SEEEEEETT----HHHH--SSS-EEEEETTTTEEEEES---THHHHHHHHHHHHHHHH.HTT-E CS
   PEPCK_ATP 100 yrlkvrviterawqalfvknllirpteeeleefepdftilnapefkadpekdglnsetvvalnlekklvlilgteYaGEikKsifsvmnyllp.kkgvl 197
                 yr++vrv++ ra++alf++n+lirp+++ele+f+pd++i+na++f a++ ++g++s+t+va+n+++k+++ilgteYaGE+kK++f+v+ y +p k++vl
  KKY17498.1 186 YRISVRVVCARAYHALFMRNMLIRPSRKELEHFHPDYVIYNAGSFPANRFTTGMTSSTSVAINFAEKEMVILGTEYAGEMKKGVFTVLFYEMPvKHNVL 284
                 *********************************************************************************************99**** PP

                 EEEEEEEE-T.TS-EEEEEE-TTSSHHHHH-BTTB-EEESSEEEE-SS-EEES-SEEEEE-TT--TTTSHHHHHHHSTT-EEES-EE-TTT--EETT-- CS
   PEPCK_ATP 198 smhcsanvgekkgdvalfFGLSGtGKTtLsadperkligdDehgwsdegvfniegGcYaKtidLskekepeiynairfgavlENvvldeetrevdfddt 296
                 ++h+san g ++gdv++fFGLSGtGKTtLsadp+r+ligdDeh+wsd+gvfniegGcYaK+i+Ls+ekep+i+nai+fg+vlENvv+++etrevd+dd+
  KKY17498.1 285 TLHSSANQG-ETGDVTVFFGLSGTGKTTLSADPKRALIGDDEHCWSDKGVFNIEGGCYAKCIGLSAEKEPDIFNAIKFGSVLENVVFSPETREVDYDDA 382
                 *********.677************************************************************************************** PP

                 SS-S--EEEEEGGGSSSB-TTSEE.--EEEEEEEE--TTS-S-SEEEE-HHHHHHHHHH-EEEE-----------EEEE-GGG-GGG-SS-HHHHHHHH CS
   PEPCK_ATP 297 slteNtrvaypiehienakeesva.ghpkniifLtadafgvlPpvskLtkeqamyhFlsGytakvaGtergvtepeatFsacfgapFlplhpteyaelL 394
                 +lteNtr+aypie+i nak ++++ +hp+nii+Lt+da gvlPp+skL+++q+m+hF+sGyt+k+aGte gvtep+atFs+cf++pFl+lhp++ya++L
  KKY17498.1 383 TLTENTRCAYPIEYIGNAKIPCISdKHPSNIILLTCDARGVLPPISKLDTAQTMFHFISGYTSKMAGTEDGVTEPQATFSSCFAQPFLALHPMRYAKML 481
                 ***********************99************************************************************************** PP

                 HHHHHHH--EEEEEE-SEESSSTTT.SEE--HHHHHHHHHHHHTTCCCTS-EEE-TTT--EEES-BTTC-G CS
   PEPCK_ATP 395 aeklekhnakvyLvNtGwtggaygv.gkrislkatraiikaildgeleavefekdpvfglevptevpgvps 464
                 aek+++hna+++L+NtGw+g    + gkr++lk+trai++ai++gel++ve+e+ ++f+l++p+++pgvp+
  KKY17498.1 482 AEKISQHNANAWLLNTGWVGAGATTgGKRCPLKYTRAILDAIHSGELAKVEYETYDTFNLKIPKTCPGVPD 552
                 ********************8776669******************************************97 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.7e-06     0.016      14     107 ..     285     411 ..     281     450 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.7e-06
      AAA_16  14 salervrsgrp.elvllsGesGvGKsslvrellralekd.......ggif.lrgkcdql..esaipysa.laqalareellrqlldeaesaeleawrek 100
                 ++ +++++g++  ++++ G sG+GK++l    +ral +d       +g+f ++g c     + +++  + + +a+++ ++l+ +   +e++e+++++++
  KKY17498.1 285 TLHSSANQGETgDVTVFFGLSGTGKTTLSADPKRALIGDdehcwsdKGVFnIEGGCYAKciGLSAEKEPdIFNAIKFGSVLENVVFSPETREVDYDDAT 383
                 5666889999999999*******************99999*9**9868888777777664533344467799999999999999999999999999999 PP

      AAA_16 101 leeala.....................a 107
                 l+e+++                     +
  KKY17498.1 384 LTENTRcaypieyignakipcisdkhpS 411
                 9998887776666666655555554440 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   6.5e-05      0.39       1      17 [.     298     314 ..     298     321 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.5e-05
      AAA_33   1 lvllvGlpGsGKstlae 17 
                 ++++ Gl+G+GK+tl+ 
  KKY17498.1 298 VTVFFGLSGTGKTTLSA 314
                 6899**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.53
# Mc/sec: 3394.65
//
Query:       KKY17499.1  [L=576]
Description: putative choline sulfatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-56  190.0   0.1    8.9e-56  189.5   0.1    1.1  1  Sulfatase       Sulfatase
      1e-16   60.4   0.2    6.4e-16   57.9   0.1    2.4  2  Choline_sulf_C  Choline sulfatase enzyme C terminal
      8e-07   29.0   0.0      0.008   15.8   0.0    2.3  2  Phosphodiest    Type I phosphodiesterase / nucleotide pyropho
    0.00098   19.9   0.0     0.0024   18.6   0.0    1.7  1  Sulfatase_C     C-terminal region of aryl-sulfatase
     0.0014   17.4   0.0     0.0018   16.9   0.0    1.1  1  DUF229          Protein of unknown function (DUF229)
  ------ inclusion threshold ------
      0.035   14.0   1.5       0.27   11.2   0.1    2.8  3  DUF4994         Domain of unknown function


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.5   0.1     3e-59   8.9e-56       1     308 [.       7     350 ..       7     351 .. 0.88

  Alignments for each domain:
  == domain 1  score: 189.5 bits;  conditional E-value: 3e-59
                 EEEEEEEESSE-TTGSGGGTTTSCS.SHHHHHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTTHHCTTTS-HHHHHHHHTT-EEEE CS
   Sulfatase   1 pnvvliladdlgagdlglyggktat.tpnldrlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgggglpqteatLpellkeaGYntaa 98 
                 pn+++i+ad++ a+ l + + k    +pnl +la+e ++f ++y+ +plc+psr++l tg+ ph  g ++n      +l  + +t + +l++ GY+ta+
  KKY17499.1   7 PNILYIMADQMCAPLLPFHDPKSVIkMPNLMKLAQESVVFDSAYCNSPLCAPSRFSLVTGQLPHKIGGYDNA----AQLSSEIPTYAHYLRREGYHTAL 101
                 9*************999999988777*******************************************999....9********************** PP

                 EEES-SCCSGGGSHHC........CTTTSEEEETSSSC.HHTCCCCCCCCCECTCCC........TTTTCSHHHHHHHHHHHHH...HCCC.TSSEEEE CS
   Sulfatase  99 igkwhlgwssrqsvyk........nrgfdrflgfptgs.aalkdpekseyngevlrv........ppeggysddrlldealefl...larn.dkpffly 176
                 +gk h    ++ ++++         ++f + +++ + +   +++++ s        +        ++++  +d+++l + +++l    +r+ ++pf l+
  KKY17499.1 102 AGKMHFIGPDQLHGFEqrltsdiyPGDFGWTVNWDEPEvMLDWYHNMS--------SvvdagpviRTNQIDYDEEVLYKSQQYLydhVRRRrNQPFALT 192
                 *****8766666555555555555334444444333321222333333........1455555669*********************55555******* PP

                 EEE-TTSSSTCTCGGHTCCGSTTTTCCCCCCH..............................HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEE CS
   Sulfatase 177 latlapHappeapdeyakkyatffddgseaar..............................qlleaylnsveyvDdligrvlaaLeenglldntlvvf 245
                  ++ +pH p++++ ey + y++ + +++++++                               +++ay+ + +yvDd++g++l++L++ g +dnt++vf
  KKY17499.1 193 ASFTHPHDPYNSQHEYWDLYEGVDIPLPKTPAmpqdkldphsqritkivdlwgkefteeqilAARRAYFSACTYVDDQVGKLLKTLKDCGFADNTIIVF 291
                 ******************************88899999999999******************************************************* PP

                 EESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHCEEECSEEEGGGHHHHHHHHTT CS
   Sulfatase 246 tSDhgasleesngplrggkganayeggtrvPllvwwpgekaprvseelvshiDlfptildlag 308
                  +Dhg++l+e      ++k  n+ eg+ rvPllv++p+++ap+ ++e vs +Dl+pt+ d +g
  KKY17499.1 292 SGDHGDMLGE---KGLWYKM-NWFEGSARVPLLVHYPQKFAPKHVKESVSTMDLLPTFVDFVG 350
                 ********77...999***9.*************************************99876 PP

>> Choline_sulf_C  Choline sulfatase enzyme C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.56   1.7e+03      19      29 ..     502     512 ..     495     514 .. 0.69
   2 !   57.9   0.1   2.1e-19   6.4e-16       2      53 .]     516     571 ..     515     571 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.56
  Choline_sulf_C  19 kGkitsWDyqp 29 
                     + + + WD++ 
      KKY17499.1 502 TETAQRWDFER 512
                     557789***85 PP

  == domain 2  score: 57.9 bits;  conditional E-value: 2.1e-19
  Choline_sulf_C   2 qVlasQrrRrlvysalkkGkitsWDyqplddasekYiRnhid....LddlErraRf 53 
                     +V++sQr Rr+v+ al kG++t WDy+ + d+s+ Y+Rn ++    L+d+E  +R+
      KKY17499.1 516 DVIRSQRYRRMVHGALIKGEHTVWDYTVPSDGSKTYVRNMGRgheaLEDFEVTSRW 571
                     8**************************************9988888*********8 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   7.2e-05      0.21       4      66 ..      12      77 ..       9      91 .. 0.85
   2 !   15.8   0.0   2.7e-06     0.008     197     233 ..     260     296 ..     150     305 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.2e-05
                  EEETT-BTTHHHHHG.S...TSHHHHHHHHHSEEESEEE-SSS-SHHHHHHHHHHSS-HHHHS--SS CS
  Phosphodiest  4 islDGlradlldrla.e...llpnlaaLakegvsapnlrpvfPtlTfpnhaslvTGlyPgeHGivgN 66
                  i  D++ a ll  +  +   ++pnl +La+e+v ++  ++  P l +p+  slvTG+ P + G ++N
    KKY17499.1 12 IMADQMCAPLLPFHDpKsviKMPNLMKLAQESVVFDSAYCNSP-LCAPSRFSLVTGQLPHKIGGYDN 77
                  666777777777776667789***************8888777.679*************9998888 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.7e-06
                   HHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES-- CS
  Phosphodiest 197 vedalrrvDkaigdLlealderglsaetniilvSDHG 233
                    + a  +vD+ +g+Ll+ l++ g++++t i+ ++DHG
    KKY17499.1 260 YFSACTYVDDQVGKLLKTLKDCGFADNTIIVFSGDHG 296
                   5677889*****************************9 PP

>> Sulfatase_C  C-terminal region of aryl-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0     8e-07    0.0024      51      97 ..     407     450 ..     392     474 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 8e-07
                  ECCEEEEETTT-TT--S-TTSTTCCHHHHHHHHHHHHHHHCCC---- CS
  Sulfatase_C  51 hdpPllFdlerDpsEkyplsaespeykevlkeikkaveehkktlkpv 97 
                   dpP l+d+e+Dp+E+ +l+a+   y++ l +++ +  ++k++ +p 
   KKY17499.1 407 IDPPQLYDVESDPQENVNLAAN---YSNSLPSVTGINTAAKDSTNPF 450
                  59******************65...5555444444444444444444 PP

>> DUF229  Protein of unknown function (DUF229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   6.2e-07    0.0018     306     348 ..     259     301 ..     232     376 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.2e-07
      DUF229 306 dkfnllealDedllkylkklekkgllentlvlllsDHGlrfgk 348
                  +f+  + +D+++ k+lk+l++ g+ +nt++++ +DHG   g+
  KKY17499.1 259 AYFSACTYVDDQVGKLLKTLKDCGFADNTIIVFSGDHGDMLGE 301
                 356666667*****************************76665 PP

>> DUF4994  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.27   8.2e+02      34      47 ..     391     404 ..     377     409 .. 0.79
   2 ?   11.2   0.1   9.1e-05      0.27      68      90 ..     410     432 ..     404     439 .. 0.87
   3 ?   -1.2   0.0      0.67     2e+03      42      55 ..     538     551 ..     531     561 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.27
     DUF4994  34 ktlsvrkkkWkyie 47 
                   + +r++kWk+i 
  KKY17499.1 391 PVIMIRRGKWKWIY 404
                 56789*******95 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 9.1e-05
     DUF4994  68 pqLydlkkdegekenvaekhpek 90 
                 pqLyd+++d++e+ n+a+++ + 
  KKY17499.1 410 PQLYDVESDPQENVNLAANYSNS 432
                 9*****************99876 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.67
     DUF4994  42 kWkyiePskgpali 55 
                  W y  Ps+g+++ 
  KKY17499.1 538 VWDYTVPSDGSKTY 551
                 6*********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 3659.69
//
Query:       KKY17500.1  [L=442]
Description: putative transcription factor tfiie complex alpha [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-15   55.0   0.1    1.1e-14   54.1   0.1    1.5  1  TFIIE_alpha      TFIIE alpha subunit
     0.0058   17.1   2.4      0.012   16.0   2.4    1.5  1  Dmrt1            Double-sex mab3 related transcription factor
  ------ inclusion threshold ------
      0.044   14.1   0.2       0.13   12.6   0.2    1.8  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
        0.2   11.8   0.5       0.45   10.7   0.5    1.6  1  Zn-ribbon_8      Zinc ribbon domain
       0.22   11.9   4.3       0.49   10.8   4.3    1.6  1  DUF4379          Probable Zinc-ribbon domain
       0.43   11.1   3.0        2.5    8.6   3.0    2.3  2  Cytochrom_c3_2   Cytochrome c3
       0.44   10.5   2.1        1.2    9.1   2.1    1.7  1  OrfB_Zn_ribbon   Putative transposase DNA-binding domain
       0.61   10.1   3.0        3.8    7.6   3.1    2.3  2  Cytochrome_C7    Cytochrome c7 and related cytochrome c
       0.83   10.1  12.0       0.28   11.6   5.0    2.8  2  PBP1_TM          Transmembrane domain of transglycosylase PBP
        1.2    9.5  20.7       0.32   11.4   9.3    2.6  2  CENP-B_dimeris   Centromere protein B dimerisation domain
        5.9    6.6  25.7      0.063   13.0  10.2    2.7  3  Cwf_Cwc_15       Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.1     7e-18   1.1e-14       2     100 ..       7     109 ..       6     114 .. 0.91

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 7e-18
                  HHHHHHHHCS-HHHHHHHHHHHCTTSEBHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEEEEEE....TTTEEEEEEEEEECCCHCCCHHHHHHHHHHH CS
  TFIIE_alpha   2 llkevvrkfygeeavlvldvLlekgevteedlakelkidlnelrklLnrLyearlvkykrrrd....eekswykyywrinyeklvdvvkrkleevvkk 95 
                  l++  vr f+  ++ l++d+L++++++t +d   +l+ + + +rklL  L++arl + + r++     +k   + y++i  ++++d++k+k+ ++  k
   KKY17500.1   7 LIRMTVRSFFTVKHSLIIDALIIHSVLTTDDFTFLLGQQTKDVRKLLHPLKQARLLSTQSRQEsrdgYQKAYSREYYYIPLHPAIDAIKYKVWKLQNK 104
                  788899****************************************************99999886767888999*****************999999 PP

                  HHHHH CS
  TFIIE_alpha  96 Leekl 100
                  ++e  
   KKY17500.1 105 VQELY 109
                  88755 PP

>> Dmrt1  Double-sex mab3 related transcription factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   2.4   7.5e-06     0.012       3      64 ..     366     422 ..     365     432 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.5e-06
       Dmrt1   3 GIshPipLpsaaellVKreangdsclfsessssaqptspssatssaategrsvisdiPsvtS 64 
                 GI +P p + +a   VKre   ++ l s ss  ++++     ++ + +++r+ +++   ++S
  KKY17500.1 366 GIGTPLPSSQGATNGVKRERDTGQGLESGSSTTVNTP-----AADTPNAKRVKMQSTTTSSS 422
                 9********************9977655555555444.....44445555555544443333 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   8.1e-05      0.13      14      63 ..     143     199 ..     139     201 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.1e-05
  Cytochrome_CBB3  14 CasCHg..kggag.....pslagrdwepdalvdiiknGkgaMpafgg.qlsdeelwal 63 
                      C  CHg  + +a+     + +ag++  ++ l++ i + ++ M+ + + ++++ +++ +
       KKY17500.1 143 CHKCHGplDRAANaqgdaNTMAGHEK-QALLQKQIARLVKLMQQIDSqEIPENDFESA 199
                      ******76333332223344444442.489999*************999999998765 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.5   0.00028      0.45       5      38 ..     117     152 ..     115     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00028
  Zn-ribbon_8   5 eYrCeeCghefevlqsis.daplta.CPeCgsevrr 38 
                  e +C++Cg+e ++l   +   p    C +C++++ r
   KKY17500.1 117 EWKCNRCGSEWTELEVLDsVGPHGFeCHKCHGPLDR 152
                  669*******9977766666677777******9987 PP

>> DUF4379  Probable Zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.3    0.0003      0.49      16      47 ..     104     136 ..      96     146 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0003
     DUF4379  16 kpeevtpgskkkvwWkCakCgheWea.svsnrt 47 
                 k +e+ +  +++  WkC++Cg eW + +v + +
  KKY17500.1 104 KVQELYKPNEERKEWKCNRCGSEWTElEVLDSV 136
                 5677777788899***********752455555 PP

>> Cytochrom_c3_2  Cytochrome c3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.37     6e+02      51      67 ..     110     126 ..      95     133 .. 0.60
   2 ?    8.6   3.0    0.0015       2.5       5      55 ..     116     169 ..     112     194 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.37
                     TTSSCTSSS-GGGTS-T CS
  Cytochrom_c3_2  51 phkshekeleCteCHke 67 
                     + ++  ke +C++C +e
      KKY17500.1 110 KPNEERKEWKCNRCGSE 126
                     33444567777777655 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0015
                     CT.TGGGTSSSST...-SSTTHHHHHHHHHHH--HHHCHTTSST.TSSBTTSSC CS
  Cytochrom_c3_2   5 egvkCadCHtkek...pkkdkaveeekClsCHgkleelakktkeakeanphksh 55 
                     ++ kC++C ++ +   + ++   +  +C +CHg l+++a+++ +a++++ h+++
      KKY17500.1 116 KEWKCNRCGSEWTeleVLDSVGPHGFECHKCHGPLDRAANAQGDANTMAGHEKQ 169
                     677888887744321122333556667999999999988888876555555543 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.1   0.00076       1.2      30      62 ..     119     156 ..      93     158 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00076
  OrfB_Zn_ribbon  30 tCseCgsknke.....alsgrtfkCpnCgfeadrDvnA 62 
                     +C++Cgs+ +e     ++ +  f+C +C   +dr  nA
      KKY17500.1 119 KCNRCGSEWTElevldSVGPHGFECHKCHGPLDRAANA 156
                     79*****99999999999999********999998887 PP

>> Cytochrome_C7  Cytochrome c7 and related cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.5   2.4e+03      46      53 ..     115     123 ..      93     130 .. 0.59
   2 ?    7.6   3.1    0.0023       3.8      12      43 ..     139     174 ..     102     181 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.5
  Cytochrome_C7  46 es.ltCgaC 53 
                    ++  +C  C
     KKY17500.1 115 RKeWKCNRC 123
                    222334444 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0023
  Cytochrome_C7  12 tgykCtdCHskl.feskak..kk.maemekgkskka 43 
                    +g +C +CH++l  +++a+  ++ ma +ek+ + ++
     KKY17500.1 139 HGFECHKCHGPLdRAANAQgdANtMAGHEKQALLQK 174
                    5789*******9433332332225666666665554 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   5.0   0.00017      0.28      20      60 ..     329     367 ..     322     383 .. 0.60
   2 ?    1.5   0.6      0.24   3.9e+02      30      46 ..     426     438 ..     402     442 .] 0.49

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
     PBP1_TM  20 parkkasrrrrrdddyddeyddeedDdddddeeeevprkgk 60 
                 + +++a+r     +d +d+ dd  +Ddddd++ e+vp  g 
  KKY17500.1 329 ERQRNAERAAMAAQDAEDDEDD--EDDDDDEDFEDVPSTGI 367
                 3334444555556666664444..45556666677776655 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.24
     PBP1_TM  30 rrdddyddeyddeedDd 46 
                  +++d d+    +e+D+
  KKY17500.1 426 EKEEDSDE----DEEDF 438
                 22333333....22232 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   9.3   0.00019      0.32      20      47 ..     341     368 ..     325     374 .. 0.78
   2 ?    3.3   3.5     0.068   1.1e+02      11      31 ..     419     439 ..     411     442 .] 0.60

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
  CENP-B_dimeris  20 eeeeeedeededeeddedddevpvpsfg 47 
                      ++ e+de+ded++dded ++vp   +g
      KKY17500.1 341 AQDAEDDEDDEDDDDDEDFEDVPSTGIG 368
                     4567788888899999999999987776 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.068
  CENP-B_dimeris  11 dsesesdeeeeeeeedeeded 31 
                      s s + e+ee+ +edeed +
      KKY17500.1 419 TSSSAAVEKEEDSDEDEEDFE 439
                     455666666666666666643 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       3.7   6.1e+03     155     155 ..     178     178 ..     147     216 .. 0.44
   2 ?   13.0  10.2   3.8e-05     0.063      56     144 ..     250     358 ..     225     362 .. 0.44
   3 ?    3.1   3.0     0.042        68     110     143 ..     403     437 ..     371     442 .] 0.41

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.7
                 - CS
  Cwf_Cwc_15 155 k 155
                 +
  KKY17500.1 178 R 178
                 1 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 3.8e-05
                 HHHHHHHHHHHHHHH-----------..................--------------------------..-----------------.......... CS
  Cwf_Cwc_15  56 aeLeeaeaeakakkrkkaeleaeeee..................ekekkeeeeeeeeeeakrrkeelleeareidaddedseeeeeeee.......... 126
                 +eL+e e++++++k+++  ++++                     e++++   +++  ++++         + +id+ d++  +  +e e          
  KKY17500.1 250 EELNETERREAEQKKATLLAQNQ--LpiwhresaigmggnsepgESTTNGFIKADPVSAEE---------KPKIDSMDDEMAAVYAEMErerqrnaera 337
                 47777777777777654333333..256777777666655555422222222222222222.........22333322222221111112233333334 PP

                 ...------------------ CS
  Cwf_Cwc_15 127 ...eesdddsdsdsddddded 144
                    +++ +d+++d+ddddded
  KKY17500.1 338 amaAQDAEDDEDDEDDDDDED 358
                 432222222323333333333 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.042
                 ----------------------..------------ CS
  Cwf_Cwc_15 110 eidaddedseeeeeeeeeesdd..dsdsdsddddde 143
                 ++d  + ++ + +++ +++s+   ++++dsd+d+++
  KKY17500.1 403 AADTPNAKRVKMQST-TTSSSAavEKEEDSDEDEED 437
                 333333333222222.22222222333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1382  (0.0770818); expected 358.6 (0.02)
Passed bias filter:                      606  (0.0338); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.52
# Mc/sec: 2560.73
//
Query:       KKY17501.1  [L=644]
Description: putative mitochondrial gtpase (miro-2) [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-33  113.0   0.0    1.1e-32  111.8   0.0    1.7  1  EF_assoc_2       EF hand associated
    6.2e-27   94.2   0.0    1.2e-14   54.2   0.0    2.2  2  Ras              Ras family
    3.9e-21   74.4   0.1    7.2e-21   73.6   0.1    1.4  1  EF_assoc_1       EF hand associated
      2e-15   57.1   0.0      2e-08   34.5   0.0    2.5  2  Roc              Ras of Complex, Roc, domain of DAPkinase
    2.4e-11   43.7   0.0    7.6e-05   22.8   0.0    2.5  2  MMR_HSR1         50S ribosome-binding GTPase
      9e-07   29.1   0.1      0.056   13.5   0.0    2.6  2  Dynamin_N        Dynamin family
    2.7e-06   26.9   0.5      0.079   12.9   0.3    2.7  2  EF-hand_6        EF-hand domain
    4.2e-06   25.9   0.5        0.1   12.2   0.2    2.7  2  EF-hand_1        EF hand
      6e-06   26.6   0.0      0.029   14.7   0.0    2.4  2  AAA_22           AAA domain
    1.9e-05   25.1   0.0      0.032   14.6   0.0    2.6  2  AAA_16           AAA ATPase domain
    2.1e-05   24.9   0.2     0.0041   17.6   0.3    2.6  2  EF-hand_7        EF-hand domain pair
    2.4e-05   23.9   0.1     0.0017   17.8   0.0    2.4  2  SRPRB            Signal recognition particle receptor beta su
     0.0001   22.1   0.1       0.32   10.7   0.1    2.3  2  AAA_24           AAA domain
    0.00012   22.0   0.0        1.4    8.8   0.0    3.3  3  RsgA_GTPase      RsgA GTPase
    0.00015   22.0   0.0       0.16   12.2   0.0    2.7  2  AAA_28           AAA domain
    0.00028   20.6   0.2       0.16   11.7   0.0    2.4  2  AAA_29           P-loop containing region of AAA domain
    0.00029   20.2   1.9       0.51    9.9   0.2    2.7  2  EF-hand_5        EF hand
    0.00044   20.8   0.0        1.2    9.7   0.0    2.7  2  AAA_18           AAA domain
    0.00045   19.7   0.3      0.015   14.7   0.0    2.3  2  FtsK_SpoIIIE     FtsK/SpoIIIE family
    0.00045   20.7   0.0       0.93   10.0   0.0    2.9  3  ABC_tran         ABC transporter
    0.00076   19.0   0.0      0.066   12.7   0.0    3.1  2  Arf              ADP-ribosylation factor family
    0.00092   18.6   0.0       0.18   11.1   0.0    2.2  2  Septin           Septin
     0.0016   18.4   0.1       0.88    9.5   0.0    2.6  2  NACHT            NACHT domain
     0.0017   17.9   0.1        1.5    8.3   0.0    2.2  2  AAA_7            P-loop containing dynein motor region
     0.0021   18.5   0.1        2.4    8.6   0.0    2.6  2  AAA              ATPase family associated with various cellul
     0.0035   17.7   0.0       0.84   10.1   0.0    2.5  2  RNA_helicase     RNA helicase
     0.0064   16.3   0.1       0.29   10.8   0.0    2.3  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0065   16.6   0.0        2.8    8.1   0.0    2.5  2  AAA_33           AAA domain
     0.0093   15.1   0.1        3.1    6.8   0.0    2.3  2  MCM              MCM P-loop domain
     0.0095   15.9   0.0        1.9    8.5   0.0    2.5  2  AAA_5            AAA domain (dynein-related subfamily)
     0.0097   15.5   0.6        4.2    6.8   0.1    3.0  3  GTP_EFTU         Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
      0.011   15.3   0.5        0.3   10.6   0.0    2.9  3  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.013   15.3   0.2         17    5.1   0.0    3.8  4  ATP_bind_1       Conserved hypothetical ATP binding protein
      0.014   14.8   0.0      0.063   12.6   0.0    1.9  2  Gtr1_RagA        Gtr1/RagA G protein conserved region
      0.018   14.2   0.0          2    7.5   0.0    2.3  2  DUF815           Protein of unknown function (DUF815)
      0.033   13.1   0.0       0.25   10.2   0.0    2.0  2  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
      0.048   14.2   1.3        1.3    9.4   0.1    2.3  2  AAA_23           AAA domain
      0.048   14.0   0.6        1.3    9.4   0.0    2.3  2  AAA_19           AAA domain
      0.073   12.8   0.0        4.1    7.0   0.0    2.2  2  AAA_15           AAA ATPase domain
      0.083   12.5   0.1         18    4.8   0.0    2.7  2  AAA_25           AAA domain
      0.098   12.1   0.0        2.5    7.5   0.0    2.1  2  SMC_N            RecF/RecN/SMC N terminal domain
        0.1   11.9   0.2       0.86    8.9   0.1    2.1  2  AIG1             AIG1 family
       0.13   12.1   0.9       0.36   10.7   0.2    2.0  2  EF-hand_10       EF hand
       0.14   11.5   0.0        2.5    7.3   0.0    2.2  2  Zeta_toxin       Zeta toxin
       0.24   10.9   0.5         11    5.6   0.1    3.2  3  FeoB_N           Ferrous iron transport protein B
       0.24   10.4   0.2        2.1    7.3   0.0    2.2  2  IIGP             Interferon-inducible GTPase (IIGP)


Domain annotation for each model (and alignments):
>> EF_assoc_2  EF hand associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.0   2.9e-35   1.1e-32       1      87 []     220     306 ..     220     306 .. 0.99

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 2.9e-35
  EF_assoc_2   1 kpLseeeledikevvskklpegveeegltlkGFlllnklfiekGrhettWtvLrkFgYddsLsLkeeflhPkldvpedssveLspkG 87 
                 kpLs+++ ++ik+++++ ++e+v++eg+++ GFlllnkl+++kGrhet+W +Lr+F+Y+d+LsL+e+f+hPk++vp+ +s+eLsp+G
  KKY17501.1 220 KPLSDQDRKNIKDTLERVSSEAVTDEGISVGGFLLLNKLYAQKGRHETIWVILRHFHYTDNLSLEESFVHPKFEVPAFASTELSPSG 306
                 79***********************************************************************************97 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   3.2e-17   1.2e-14       2     160 ..       6     167 ..       5     169 .. 0.82
   2 !   38.0   0.0     3e-12   1.2e-09       3     118 ..     427     543 ..     425     574 .. 0.85

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 3.2e-17
                 EEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHH.HHHHHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvk.kwveeikr 99 
                 + + Gd+++GK+sl+++ vkd+F +++++ +  + ++  +    ++v+ ++ DT    + ++     +r++++illvy+  ++ s+e+++  w+ +++ 
  KKY17501.1   6 ICVCGDEGTGKSSLITSLVKDTFITNKIQPVLPQITIPPTLGTPENVTTTVIDTSALPQERANLAREIRKSNVILLVYS--DHYSYERIAlFWMPHLRG 102
                 7799**********************9999956666666666799*********97555555555668**********7..99*******778888877 PP

                 HSTTTSEEEEEEETTTGGG...G-SS-HHHHHHHHHHHT..SEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDlee...kravsteegeelakelg..lkfletSAktnenveeafeellrei 160
                     nvp+vL++nK+Dl++     +v +ee   l  e++     + tSA++++nv+eaf  + +++
  KKY17501.1 103 LGV-NVPVVLCANKSDLATdgtGPQVMEEEMLPLMAEFKeiDSCIRTSAREHYNVNEAFFLCQKAV 167
                 777.7*************978755666666666555555444689**************9877765 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 3e-12
                 EEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHH...HHHHTTESEEEEEEETTBHHHHHTHHHHHHHHH CS
         Ras   3 vlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslr...elyyrdaegillvyditsresfenvkkwveeik 98 
                 +++G  + GKtsll+ f +++F+  +++Ti+ +  ++++e+ g +    i+   Gq   +++    ++++++++ il vyd ++ +sf+ +  + e+  
  KKY17501.1 427 LIIGAPGSGKTSLLNAFLSKEFSPLHHPTIHSATAINTVELPGGRQIYLILTEPGQVSASAVLenlDKVLQTVDSILYVYDSSDPDSFSYIPAIREKYA 525
                 69***************************************966655667777899988877512256899***********************99999 PP

                 HHSTTTSEEEEEEETTTGGG CS
         Ras  99 rvaeenvpivLvGnKvDlee 118
                 + a   +p v v+ K+Dl++
  KKY17501.1 526 HLAC--LPSVYVALKADLDR 543
                 9888..8***********97 PP

>> EF_assoc_1  EF hand associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.1   1.8e-23   7.2e-21       1      72 [.     344     413 ..     344     416 .. 0.90

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 1.8e-23
  EF_assoc_1   1 WaeaefpsstvtneegavtlqGwLaqWsltTlldvkttleyLaYlGypssslseeett.sAlkvtrprkldrk 72 
                 W +++fp  t tn++g+vtlqGwLaqWs      +  ++eyLaYlGy+++s    ++t sAlkvt+p k++++
  KKY17501.1 344 WISTNFPACTLTNDAGYVTLQGWLAQWSFFVRESPASAIEYLAYLGYSNTS---PPNTvSALKVTKPLKRSKR 413
                 99*********************************************8544...34555********998887 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   5.2e-11     2e-08       1     119 [.       5     117 ..       5     118 .. 0.79
   2 !   20.0   0.0   1.6e-06   0.00061       3      40 ..     427     464 ..     426     475 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 5.2e-11
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGH.HHHCHH.H CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsr.ssenlk.e 97 
                 +++++Gd+g+GK+sl++++v+d+f +++ + +  +++        ++ +    ++v+  + Dt+   + r+     +r++++++lvy ++ s+e++   
  KKY17501.1   5 RICVCGDEGTGKSSLITSLVKDTFITNKIQPVLPQITIP-----PTLGTP---ENVTTTVIDTSALPQERANLAREIRKSNVILLVYSDHySYERIAlF 95 
                 689*********************988877665555332.....223233...468899*****97777777777789********9755266776438 PP

                 HHHHHHHHCSSS-EEEEEE-TT CS
         Roc  98 WlkelkkvagkspvilvgnkiD 119
                 W+ +l+  + + pv+l++nk D
  KKY17501.1  96 WMPHLRGLGVNVPVVLCANKSD 117
                 ********************99 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 1.6e-06
                 EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEE CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekstigvdfltke 40 
                 +++G  g+GKtsll+ f++++fs+ +++ti   ++ ++
  KKY17501.1 427 LIIGAPGSGKTSLLNAFLSKEFSPLHHPTIHSATAINT 464
                 68***************************987776555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0     2e-07   7.6e-05       1      96 [.       5      93 ..       5     115 .. 0.67
   2 !   18.6   0.0   3.9e-06    0.0015       3      87 ..     427     512 ..     425     538 .. 0.65

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2e-07
                EEEEEESTTSSHHHHHHHHHTSTEEESSST....TSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHH CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltgekaivsdkp....gtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldee 96
                ++++ G   +GKS+Li +l++++ i+++++    + T+ ++ g+ +  +   +++Dt  l +   e+ +l+++++   ++++illv +    +++ ++  
  KKY17501.1  5 RICVCGDEGTGKSSLITSLVKDTFITNKIQpvlpQITIPPTLGTPE--NVTTTVIDTSALPQ---ERANLAREIR---KSNVILLVYS-D--HYSYERIA 93
                689******************977776664444499*******988..8899*******665...3335555554...6888888886.3..24334333 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 3.9e-06
                 EEEESTTSSHHHHHHHHHTSTEEESSST..TSSSSEEEEEEEETTEEEEEEEC.GGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETT..T CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgekaivsdkp..gtTrdinegrvklkgkeielvDt.pGliegaseekglgkaflalee.adlillvvdas..e 87 
                 +i+G p +GK++L+na + ++    ++p     + in+ ++  +g++i+l+ t pG ++       + +++ ++ + +d il+v d+s  +
  KKY17501.1 427 LIIGAPGSGKTSLLNAFLSKEFSPLHHPtiHSATAINTVELP-GGRQIYLILTePGQVS----ASAVLENLDKVLQtVDSILYVYDSSdpD 512
                 69****************985544444411555555555554.5588887766699554....3344444444445389******966441 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0    0.0002      0.08       1      31 [.       6      36 ..       6      86 .. 0.84
   2 !   13.5   0.0   0.00014     0.056       3      34 ..     428     460 ..     427     515 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.0002
                EEEEEBTTTTHHHHHHHHHTS--S---SSS- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnpt 31
                i+v+G+   GKSS++ +L+++ +  ++ +p+
  KKY17501.1  6 ICVCGDEGTGKSSLITSLVKDTFITNKIQPV 36
                89********************998887776 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 0.00014
                 EEEBTTTTHHHHHHHHHTS--S-.--SSS---S CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlgedilp.rgpnptTrr 34 
                 ++G+  sGK+S+lna l +++ p  +p++ +++
  KKY17501.1 428 IIGAPGSGKTSLLNAFLSKEFSPlHHPTIHSAT 460
                 79999*****************95555555554 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.3    0.0002     0.079       2      23 ..     190     211 ..     189     216 .. 0.91
   2 !   11.2   0.0   0.00071      0.28       2      26 ..     310     334 ..     309     338 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.0002
   EF-hand_6   2 lreaFklfDkdgdGkidaeElr 23 
                 lr++F l Dk++dG+++ +El 
  KKY17501.1 190 LRRVFYLCDKNRDGFLNDKELD 211
                 89***************99985 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00071
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 l ++F l Dkd+dG ++  El +a+
  KKY17501.1 310 LVDLFLLSDKDNDGGLSSTELASAF 334
                 6799*****************9987 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.2   0.00026       0.1       2      23 ..     190     211 ..     189     214 .. 0.90
   2 !   11.2   0.0   0.00056      0.22       4      26 ..     312     334 ..     309     336 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00026
                 HHHHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfk 23 
                 l+++F + Dk++dG+++ +E+ 
  KKY17501.1 190 LRRVFYLCDKNRDGFLNDKELD 211
                 789999*************996 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00056
                 HHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkell 26 
                 ++F + DkD+dG ++  E+ +++
  KKY17501.1 312 DLFLLSDKDNDGGLSSTELASAF 334
                 789999*************9987 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0029       1.1       8      29 ..       6      27 ..       5      76 .. 0.73
   2 !   14.7   0.0   7.4e-05     0.029       7      51 ..     425     471 ..     420     503 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0029
      AAA_22  8 lvvtGesGtGKTtllrrlleql 29
                ++v+G  GtGK+ l+  l++  
  KKY17501.1  6 ICVCGDEGTGKSSLITSLVKDT 27
                68*************9998765 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 7.4e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee.erpevv.fvtlpsst 51 
                 + +++G +G+GKT ll+ +l++     ++ + ++++ + +v+lp++ 
  KKY17501.1 425 HSLIIGAPGSGKTSLLNAFLSKEFSPLHHPTiHSATAInTVELPGGR 471
                 679*****************997444444447666665666666554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0     0.011       4.1      27      46 ..       6      25 ..       3      42 .. 0.85
   2 !   14.6   0.0   8.1e-05     0.032      26      46 ..     425     445 ..     412     527 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.011
      AAA_16 27 vllsGesGvGKsslvrellr 46
                + + G+ G+GKssl+++l +
  KKY17501.1  6 ICVCGDEGTGKSSLITSLVK 25
                5689***********88764 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 8.1e-05
      AAA_16  26 lvllsGesGvGKsslvrellr 46 
                   l++G++G+GK+sl++++l 
  KKY17501.1 425 HSLIIGAPGSGKTSLLNAFLS 445
                 559***************995 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.3     1e-05    0.0041       3      45 ..     189     226 ..     187     245 .. 0.79
   2 ?    4.2   0.0      0.16        62       7      28 ..     313     334 ..     303     341 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1e-05
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdee 45 
                 +l+++F + D+++dg+l+  el ++  +     + g++lsd+ 
  KKY17501.1 189 ALRRVFYLCDKNRDGFLNDKELDEFQIQ-----CFGKPLSDQD 226
                 799********************98888.....7777777755 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.16
   EF-hand_7   7 aFkelDtdgdgyldkeellrll 28 
                  F + D+d+dg l+ +el +++
  KKY17501.1 313 LFLLSDKDNDGGLSSTELASAF 334
                 5666788888888888887765 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.11        43       5      69 ..       5      72 ..       2      84 .. 0.65
   2 !   17.8   0.0   4.4e-06    0.0017       7      86 ..     427     509 ..     421     513 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.11
                EEEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG.....GGTT-SEEEETT-GCCSHHHHHH CS
       SRPRB  5 avllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv..ksekgskltliDfPGheklrqkllek 69
                ++ + G   +GK sl+t L +d++ +  +    ++++      + ++ ++t+iD     + r +l  +
  KKY17501.1  5 RICVCGDEGTGKSSLITSLVKDTFITNKIQPvLPQITIPPtlGTPENVTTTVIDTSALPQERANLARE 72
                57788999**************7765544333555544332256677777777776666666666666 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 4.4e-06
                 EEE-STTSSHHHHHHHHHHS....S---B---SS-EEETTG...GGTT-SEE.EETT-GCCSHHHHHHHHHHGGEEEEEEEEETT CS
       SRPRB   7 llvGlsdsGKTslftrLttd....svkktvtSqessaalkvksekgskltli.DfPGheklrqklleklkaksslkglvfvvDSt 86 
                 l++G   sGKTsl++  +++      ++t  S  +  + ++    g ++ li   PG+++    l +  k  +++ ++++v DS+
  KKY17501.1 427 LIIGAPGSGKTSLLNAFLSKefspLHHPTIHSATAINTVEL--PGGRQIYLIlTEPGQVSASAVLENLDKVLQTVDSILYVYDSS 509
                 89**************9999555556677777777777777..455555554256*****99999998899999*********97 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   0.00082      0.32       3      28 ..       4      29 ..       3      32 .. 0.85
   2 !    8.9   0.0    0.0028       1.1       6      39 ..     427     463 ..     424     523 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00082
      AAA_24  3 lkiliyGpsgiGKTtlakelgpkplf 28
                ++i++ G++g+GK++l+++l +++++
  KKY17501.1  4 VRICVCGDEGTGKSSLITSLVKDTFI 29
                69****************99666655 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0028
      AAA_24   6 liyGpsgiGKTtlakel...gpkplfidtekGlksld 39 
                 li+G +g+GKT+l++ +   + +pl   t +++ +++
  KKY17501.1 427 LIIGAPGSGKTSLLNAFlskEFSPLHHPTIHSATAIN 463
                 79************99976655666666666555555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0037       1.4     103     125 ..       7      28 ..       3      39 .. 0.80
   2 ?    0.6   0.0       1.2   4.7e+02      46      64 ..     106     128 ..     100     167 .. 0.74
   3 !    8.0   0.0    0.0065       2.5     102     122 ..     426     446 ..     405     468 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0037
                  EEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpelel 125
                  +++G  G GKS+Li +l+ + + 
   KKY17501.1   7 CVCGDEGTGKSSLITSLVKD-TF 28 
                  789**************987.44 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.2
                  T-EEEEEEE-GGG--HHH....H CS
  RsgA_GTPase  46 giepvivlnKiDlleeee....e 64 
                  ++++v++ nK Dl+++ +     
   KKY17501.1 106 NVPVVLCANKSDLATDGTgpqvM 128
                  6899**********998744330 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0065
                  EEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe 122
                  s+++G  G GK++L+na+l++
   KKY17501.1 426 SLIIGAPGSGKTSLLNAFLSK 446
                  789**************9886 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.017       6.5       1      21 [.       5      25 ..       5      38 .. 0.87
   2 !   12.2   0.0   0.00042      0.16       4      22 ..     428     446 ..     426     528 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.017
      AAA_28  1 kivitGgestGKTtlleaLaa 21
                +i++ G e+tGK++l+  L +
  KKY17501.1  5 RICVCGDEGTGKSSLITSLVK 25
                79**************99965 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00042
      AAA_28   4 itGgestGKTtlleaLaar 22 
                 i+G++++GKT+ll+a+ ++
  KKY17501.1 428 IIGAPGSGKTSLLNAFLSK 446
                 9************997655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1     0.022       8.4      27      39 ..       8      20 ..       3      26 .. 0.86
   2 !   11.7   0.0   0.00042      0.16      25      42 ..     426     443 ..     416     445 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.022
      AAA_29 27 ltGpsGsGKSTll 39
                + G+ G+GKS+l+
  KKY17501.1  8 VCGDEGTGKSSLI 20
                78**********9 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00042
      AAA_29  25 tlltGpsGsGKSTllDAi 42 
                  l++G+ GsGK++ll A+
  KKY17501.1 426 SLIIGAPGSGKTSLLNAF 443
                 69*************996 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.2    0.0013      0.51       2      24 ..     191     213 ..     190     214 .. 0.84
   2 !    9.2   0.1    0.0023       0.9       1      22 [.     310     331 ..     310     335 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0013
                 HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktl 24 
                 + +F   D+N+DG+++  EL ++
  KKY17501.1 191 RRVFYLCDKNRDGFLNDKELDEF 213
                 5678888************9775 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0023
                 HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELk 22 
                 l+d+F   D+++DG +s  EL 
  KKY17501.1 310 LVDLFLLSDKDNDGGLSSTELA 331
                 57788888************96 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0     0.003       1.2       1      21 [.       6      26 ..       6     117 .. 0.88
   2 !    8.5   0.0    0.0073       2.8       2      18 ..     427     443 ..     427     509 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.003
      AAA_18  1 IlltGtpGvGKttlakeLskr 21
                I+++G  G+GK++l   L k 
  KKY17501.1  6 ICVCGDEGTGKSSLITSLVKD 26
                9**************999886 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0073
      AAA_18   2 lltGtpGvGKttlakeL 18 
                 l+ G+pG+GKt+l ++ 
  KKY17501.1 427 LIIGAPGSGKTSLLNAF 443
                 699**********9875 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1       0.2        78      42      60 ..       6      24 ..       3      32 .. 0.88
   2 !   14.7   0.0   3.8e-05     0.015      40      60 ..     424     444 ..     396     447 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.2
                  EEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE 42 llvaGatgsGKStalntLi 60
                  + v+G  g+GKS  + +L+
    KKY17501.1  6 ICVCGDEGTGKSSLITSLV 24
                  579*********9999886 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 3.8e-05
                   .SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  40 shllvaGatgsGKStalntLi 60 
                    h l++Ga+gsGK+  ln+++
    KKY17501.1 424 LHSLIIGAPGSGKTSLLNAFL 444
                   599***************986 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0      0.02       7.7      14      35 ..       6      27 ..       3     101 .. 0.83
   2 ?   -1.1   0.0       6.6   2.6e+03      41      80 ..     214     260 ..     205     288 .. 0.73
   3 !   10.0   0.0    0.0024      0.93      16      34 ..     428     446 ..     424     504 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.02
                EEEEESTTSSHHHHHHHHTTSS CS
                xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagll 35
                + + G+ G+GKS+L+  l + +
  KKY17501.1  6 ICVCGDEGTGKSSLITSLVKDT 27
                6789***********9998764 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 6.6
                 EEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.......H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......x RF
    ABC_tran  41 eilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.......e 80 
                 +i++ gk+l++q+++  +  ++ ++ e+  +++++v+         +
  KKY17501.1 214 QIQCFGKPLSDQDRKNIKDTLERVSSEAVTDEGISVGGFlllnklyA 260
                 78888999999999999999999999988888887766555555541 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.0024
                 EEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxx RF
    ABC_tran  16 ivGenGaGKStLlkllagl 34 
                 i+G  G+GK++Ll++++ +
  KKY17501.1 428 IIGAPGSGKTSLLNAFLSK 446
                 9*************98654 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1       0.3   1.2e+02      16      44 ..       5      35 ..       2     161 .. 0.52
   2 !   12.7   0.0   0.00017     0.066      15      97 ..     424     514 ..     414     528 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.3
                EEEEEESTTSSHHHHHHHHHHSSCEE..CSS CS
         Arf 16 rilllGLDnaGKtTilkklkleelvt..tvP 44
                ri + G +++GK+ +++ l ++ + t  ++P
  KKY17501.1  5 RICVCGDEGTGKSSLITSLVKDTFITnkIQP 35
                5566666666666666666665554422223 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00017
                 EEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEE..EEEEEE...TTEEEEEEEE-SSGGGGGG...GGGGCTTESEEEEEEETT-CTTH CS
         Arf  15 lrilllGLDnaGKtTilkklkleelvt.tvPTigfn..veelei...knlkftvwDvGGqeklRpl...WknYfektdavifvvDsadreRl 97 
                 l+ l++G  ++GKt +l+ + ++e++  + PTi++   ++++e    +++ + + +  Gq ++  +    ++ ++++d++++v Ds+d + +
  KKY17501.1 424 LHSLIIGAPGSGKTSLLNAFLSKEFSPlHHPTIHSAtaINTVELpggRQIYLILTE-PGQVSASAVlenLDKVLQTVDSILYVYDSSDPDSF 514
                 6789********************998699***97522677777654555554444.56666555511145568888999999999887765 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00046      0.18       4      34 ..       3      33 ..       1      65 [. 0.86
   2 ?    5.3   0.0     0.026        10       8      33 ..     427     452 ..     422     474 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00046
                EEEEEEEEBTTSSCCCCCCTTSSSS------ CS
      Septin  4 eftlmvvGesglGkttlintlfetdlieeek 34
                ++ + v+G++g+Gk++li +l++++ i+++ 
  KKY17501.1  3 TVRICVCGDEGTGKSSLITSLVKDTFITNKI 33
                56789******************99988764 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.026
                 EEEEBTTSSCCCCCCTTSSSS----- CS
      Septin   8 mvvGesglGkttlintlfetdlieee 33 
                 +++G+ g Gkt+l+n++++++  + +
  KKY17501.1 427 LIIGAPGSGKTSLLNAFLSKEFSPLH 452
                 899***************99887664 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.025       9.6       3      22 ..       6      25 ..       4      28 .. 0.90
   2 !    9.5   0.0    0.0023      0.88       3      22 ..     426     445 ..     424     449 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.025
                EEEEC-TTTCHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklal 22
                +++ G+ G GK+ L+ +l+ 
  KKY17501.1  6 ICVCGDEGTGKSSLITSLVK 25
                899************99986 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0023
                 EEEEC-TTTCHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklal 22 
                 +++ G++GsGKT Ll  + +
  KKY17501.1 426 SLIIGAPGSGKTSLLNAFLS 445
                 6899***********98765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0038       1.5      35      56 ..       5      26 ..       2      43 .. 0.79
   2 !    7.3   0.0     0.008       3.1      33      56 ..     423     446 ..     416     464 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0038
       AAA_7 35 pvllvGptGtGKtviikdllkk 56
                 ++++G++GtGK+++i++l+k 
  KKY17501.1  5 RICVCGDEGTGKSSLITSLVKD 26
                5789*************97654 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.008
       AAA_7  33 kkpvllvGptGtGKtviikdllkk 56 
                   + l++G  G+GKt++++ +l+k
  KKY17501.1 423 VLHSLIIGAPGSGKTSLLNAFLSK 446
                 56889***************7654 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.014       5.5       1      22 [.       6      27 ..       6      82 .. 0.73
   2 !    8.6   0.0    0.0061       2.4       2      21 ..     427     446 ..     426     498 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.014
                EEEESSTTSSHHHHHHHHHHHH CS
         AAA  1 vllyGppGtGKTllakavakel 22
                ++++G  GtGK++l+ +++k++
  KKY17501.1  6 ICVCGDEGTGKSSLITSLVKDT 27
                6899**************9985 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0061
                 EEESSTTSSHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavake 21 
                 l++G pG GKT+l +a  ++
  KKY17501.1 427 LIIGAPGSGKTSLLNAFLSK 446
                 799**********9998766 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0022      0.84       1      22 [.       6      27 ..       6      46 .. 0.87
   2 ?    5.0   0.0      0.08        31       3      21 ..     428     446 ..     426     466 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0022
  RNA_helicase  1 iwlyGpsgeGKStlakeLakal 22
                  i+++G++g+GKS+l+++L+k+ 
    KKY17501.1  6 ICVCGDEGTGKSSLITSLVKDT 27
                  79***************99985 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.08
  RNA_helicase   3 lyGpsgeGKStlakeLaka 21 
                   + G++g GK++l + + ++
    KKY17501.1 428 IIGAPGSGKTSLLNAFLSK 446
                   89***********995443 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.16        63       8      26 ..      13      31 ..       6      65 .. 0.76
   2 !   10.8   0.0   0.00074      0.29       2      23 ..     427     451 ..     426     471 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.16
  Viral_helicase1  8 GcGKStlirkllrtslilt 26
                     G GKS+li +l+++  i +
       KKY17501.1 13 GTGKSSLITSLVKDTFITN 31
                     99**********9963333 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00074
  Viral_helicase1   2 vvhGvpGcGKStlirkllrts...l 23 
                      ++ G+pG+GK++l+  +l+++   l
       KKY17501.1 427 LIIGAPGSGKTSLLNAFLSKEfspL 451
                      678***************9966442 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.033        13       3      22 ..       7      26 ..       6      40 .. 0.88
   2 !    8.1   0.0    0.0073       2.8       3      22 ..     427     446 ..     426     492 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.033
      AAA_33  3 llvGlpGsGKstlaerllkk 22
                 ++G  G+GKs l+++l+k 
  KKY17501.1  7 CVCGDEGTGKSSLITSLVKD 26
                68***************975 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0073
      AAA_33   3 llvGlpGsGKstlaerllkk 22 
                 l++G+pGsGK+ l+   l k
  KKY17501.1 427 LIIGAPGSGKTSLLNAFLSK 446
                 579**********9988754 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.015         6      58      78 ..       4      24 ..       2      34 .. 0.84
   2 !    6.8   0.0    0.0081       3.1      48      77 ..     414     443 ..     399     464 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.015
                -EEEEEESSTSTHHHHHHHHH CS
         MCM 58 invllvgdpgtaKsqlLkyve 78
                + ++++gd gt+Ks l+ ++ 
  KKY17501.1  4 VRICVCGDEGTGKSSLITSLV 24
                689*************98765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0081
                 BSSSSBBCSS-EEEEEESSTSTHHHHHHHH CS
         MCM  48 ledktklrgdinvllvgdpgtaKsqlLkyv 77 
                  +++  +r+  + l++g pg +K+ lL++ 
  KKY17501.1 414 PSNQPVVRTVLHSLIIGAPGSGKTSLLNAF 443
                 34445699*******************875 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.061        24       2      21 ..       6      25 ..       5      40 .. 0.81
   2 !    8.5   0.0     0.005       1.9       2      22 ..     426     446 ..     425     504 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.061
                EEEE--SSSSHHHHHHHGGG CS
       AAA_5  2 vlLvGppGtgKselaerlaa 21
                +++ G+ GtgKs+l+ +l +
  KKY17501.1  6 ICVCGDEGTGKSSLITSLVK 25
                6899**********999876 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.005
                 EEEE--SSSSHHHHHHHGGGG CS
       AAA_5   2 vlLvGppGtgKselaerlaaa 22 
                  l++G+pG+gK++l   +++ 
  KKY17501.1 426 SLIIGAPGSGKTSLLNAFLSK 446
                 699***********9988765 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1     0.011       4.2       4      33 ..       4      33 ..       2      68 .. 0.86
   2 ?    4.5   0.0     0.059        23     121     150 ..     105     135 ..      48     191 .. 0.66
   3 ?    0.4   0.0       1.1   4.1e+02       5      25 ..     425     445 ..     421     461 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.011
                EEEEEEESTTSSHHHHHHHHHHHTTSSCHH CS
    GTP_EFTU  4 rnigiighvDhGKtTLtdrLlyktgaiskk 33
                + i+++g+  +GK++L+ +L+++t +++k 
  KKY17501.1  4 VRICVCGDEGTGKSSLITSLVKDTFITNKI 33
                689******************999887775 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.059
                 TTTEEEEEEESCGST..HHHHHHHHHHHHHHH CS
    GTP_EFTU 121 egvpiivfiNKmDrl..kaelkeiveevkqkl 150
                 ++vp++++ NK D +  ++  + + ee+   l
  KKY17501.1 105 VNVPVVLCANKSDLAtdGTGPQVMEEEML-PL 135
                 4666***********87444444444443.33 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 1.1
                 EEEEEESTTSSHHHHHHHHHH CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLly 25 
                    iig   +GKt+L+ + l 
  KKY17501.1 425 HSLIIGAPGSGKTSLLNAFLS 445
                 5679***********999876 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.63   2.5e+02       4      23 ..       7      26 ..       4      34 .. 0.84
   2 ?   -2.6   0.0       9.1   3.6e+03     114     153 ..      52      87 ..      48      93 .. 0.69
   3 ?   10.6   0.0   0.00078       0.3       4      23 ..     427     446 ..     424     452 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.63
                EEEESTTCCHHHHHHHHHCT CS
        cobW  4 vltGflGsGKTtLlnhllen 23
                 ++G  G+GK++L+++l+++
  KKY17501.1  7 CVCGDEGTGKSSLITSLVKD 26
                688999*********99854 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 9.1
                 EEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHH CS
        cobW 114 avvavvDaknleaeeekieekaedqlaaadllvlnKtDll 153
                 ++ +v+D ++l     +++ ++ +++ ++++++l   D  
  KKY17501.1  52 VTTTVIDTSAL----PQERANLAREIRKSNVILLVYSDHY 87 
                 56788998554....5666677778888888888766665 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00078
                 EEEESTTCCHHHHHHHHHCT CS
        cobW   4 vltGflGsGKTtLlnhllen 23 
                 ++ G +GsGKT+Lln+ l++
  KKY17501.1 427 LIIGAPGSGKTSLLNAFLSK 446
                 689************99965 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       1.2   4.7e+02       1      18 [.       8      25 ..       8      35 .. 0.87
   2 ?    1.5   0.0      0.54   2.1e+02     155     194 ..     105     150 ..      69     183 .. 0.73
   3 ?    5.1   0.0     0.044        17       1      16 [.     428     443 ..     428     452 .. 0.89
   4 ?    2.5   0.0      0.27     1e+02      91     170 ..     472     542 ..     459     570 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 1.2
  ATP_bind_1  1 vvGpaGsGKttfvgalse 18
                v+G  G GK++++ +l++
  KKY17501.1  8 VCGDEGTGKSSLITSLVK 25
                8999*********99875 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.54
  ATP_bind_1 155 lelPhvvvlnkfDllkek......lekeleffedvealslllekee 194
                 +++P v + nk Dl+ +       +e+ l  + ++++++  + +  
  KKY17501.1 105 VNVPVVLCANKSDLATDGtgpqvmEEEMLPLMAEFKEIDSCIRTSA 150
                 689***********77546555544455555555555555444443 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.044
  ATP_bind_1   1 vvGpaGsGKttfvgal 16 
                 ++G +GsGKt++ +a+
  KKY17501.1 428 IIGAPGSGKTSLLNAF 443
                 79**********9987 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.27
  ATP_bind_1  91 ddyllfDtPGQielfthseslakiveeLesefalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDllk 170
                 + yl++  PGQ+    ++e l k++++  s     ++y+ Ds   ++  ++i +  +  +    + lP v v  k+Dl +
  KKY17501.1 472 QIYLILTEPGQVSASAVLENLDKVLQTVDS-----ILYVYDSSDPDS-FSYIPA--IREKYAHLACLPSVYVALKADL-D 542
                 56999999*************999988886.....889999988766.778877..6666666677888888888888.3 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.3   8.8e+02       2      24 ..       6      29 ..       5      59 .. 0.76
   2 ?   12.6   0.0   0.00016     0.063       3      89 ..     427     511 ..     425     536 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.3
   Gtr1_RagA  2 vLLmGksgsGKtsm.rsiiFdnyl 24
                +  +G +g GK+s+  s + d ++
  KKY17501.1  6 ICVCGDEGTGKSSLiTSLVKDTFI 29
                5679********961455555555 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00016
   Gtr1_RagA   3 LLmGksgsGKtsmrsi.iFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesr 89 
                 L++G  gsGKts+ +  + +++++ +  ++ +++ ++  e+   ++++l l + +Gq +  +    ++ ++++++v++++yV D+++ 
  KKY17501.1 427 LIIGAPGSGKTSLLNAfLSKEFSPLHHPTIHSATAINTVELPGGRQIYLILTE-PGQVSASAV--LENLDKVLQTVDSILYVYDSSDP 511
                 789*********8766155679*******************999999998877.999877666..58999**************9855 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0052         2      56      76 ..       6      26 ..       2      37 .. 0.86
   2 ?    4.2   0.0     0.054        21      55      76 ..     425     446 ..     420     451 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0052
      DUF815 56 vLLwGarGtGKSslvkallne 76
                + + G+ GtGKSsl+ +l+++
  KKY17501.1  6 ICVCGDEGTGKSSLITSLVKD 26
                5678************99876 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.054
      DUF815  55 nvLLwGarGtGKSslvkallne 76 
                 + L++Ga G+GK sl+ a l++
  KKY17501.1 425 HSLIIGAPGSGKTSLLNAFLSK 446
                 789**************98865 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.77     3e+02      17      37 ..       5      25 ..       2      28 .. 0.87
   2 ?   10.2   0.0   0.00063      0.25      14      37 ..     422     445 ..     417     447 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.77
  TrwB_AAD_bind 17 hilivGttGsGKtqalekllr 37
                    i + G  G+GK+  +++l++
     KKY17501.1  5 RICVCGDEGTGKSSLITSLVK 25
                   67899************9987 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00063
  TrwB_AAD_bind  14 etqhilivGttGsGKtqalekllr 37 
                     + h li+G+ GsGKt  l+++l 
     KKY17501.1 422 TVLHSLIIGAPGSGKTSLLNAFLS 445
                    678*****************9986 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1      0.26     1e+02      23      38 ..       7      22 ..       6      24 .. 0.87
   2 ?    9.4   0.1    0.0034       1.3      23      39 ..     427     443 ..     425     445 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.26
      AAA_23 23 lItGpNGaGKTTildA 38
                +++G+ G+GK++++  
  KKY17501.1  7 CVCGDEGTGKSSLITS 22
                789**********975 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0034
      AAA_23  23 lItGpNGaGKTTildAi 39 
                 lI+G  G+GKT++l+A+
  KKY17501.1 427 LIIGAPGSGKTSLLNAF 443
                 8**************97 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.48   1.9e+02      13      38 ..       6      31 ..       2      60 .. 0.80
   2 ?    9.4   0.0    0.0032       1.3      13      31 ..     426     444 ..     419     465 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.48
      AAA_19 13 llvtaGpGtGKTrvlkhivallvelg 38
                ++v +  GtGK+ +++  v+    ++
  KKY17501.1  6 ICVCGDEGTGKSSLITSLVKDTFITN 31
                6799999*********9998665554 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0032
      AAA_19  13 llvtaGpGtGKTrvlkhiv 31 
                  l+++ pG+GKT +l++ +
  KKY17501.1 426 SLIIGAPGSGKTSLLNAFL 444
                 69***********998765 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.14        54      27      49 ..       7      31 ..       5      81 .. 0.82
   2 ?    7.0   0.0     0.011       4.1      26      43 ..     426     443 ..     417     498 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.14
      AAA_15 27 vliGkNnsGKSsileal..dlFlnn 49
                +++G  ++GKSs++  l  d F++n
  KKY17501.1  7 CVCGDEGTGKSSLITSLvkDTFITN 31
                89************99933345555 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.011
      AAA_15  26 tvliGkNnsGKSsileal 43 
                 +++iG+ +sGK+s+l+a+
  KKY17501.1 426 SLIIGAPGSGKTSLLNAF 443
                 68**************98 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.046        18      36      54 ..       6      24 ..       3      36 .. 0.87
   2 ?    4.4   0.0     0.061        24      36      50 ..     426     440 ..     396     447 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.046
      AAA_25 36 allaGapgtGKttlaldla 54
                + ++G++gtGK+ l ++l+
  KKY17501.1  6 ICVCGDEGTGKSSLITSLV 24
                5689***********9997 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.061
      AAA_25  36 allaGapgtGKttla 50 
                 +l++Gapg+GKt l+
  KKY17501.1 426 SLIIGAPGSGKTSLL 440
                 7899********997 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.28   1.1e+02      28      44 ..       7      23 ..       3      25 .. 0.89
   2 ?    7.5   0.0    0.0065       2.5      26      44 ..     425     443 ..     412     451 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.28
                EEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxx RF
       SMC_N 28 aivGpNGSGKsnlldAi 44
                ++ G  G GKs+l+ ++
  KKY17501.1  7 CVCGDEGTGKSSLITSL 23
                699**********9987 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0065
                 EEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAi 44 
                 ++ i+G+ GSGK++ll+A 
  KKY17501.1 425 HSLIIGAPGSGKTSLLNAF 443
                 578*************996 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1    0.0022      0.86       2      61 ..       5      64 ..       4      85 .. 0.76
   2 ?    0.5   0.0      0.81   3.1e+02       4      63 ..     427     486 ..     424     503 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0022
                EEEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEE..EETTEEEEEEE--SCCC CS
        AIG1  2 tivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksr..twdgkkinViDTPglfd 61
                +i + G  g+GkS+ + s+++++  + k+  q+v  + +   +  t+++ +  ViDT  l +
  KKY17501.1  5 RICVCGDEGTGKSSLITSLVKDTFITNKI--QPVLPQITIPPTlgTPENVTTTVIDTSALPQ 64
                8999**************99887666665..7887777766555599**********88744 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.81
                 EEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEE.EETTEEEEEEE-.-SCCCTT CS
        AIG1   4 vlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksr.twdgkkinViDT.Pglfdls 63 
                 +++G  g+Gk +  N+ l k+   s l++ ++ ++   ++   + g++i  i T Pg ++ s
  KKY17501.1 427 LIIGAPGSGKTSLLNAFLSKEF--SPLHHPTIHSATAINTVeLPGGRQIYLILTePGQVSAS 486
                 689**************98764..34445555554444444466666666665546655555 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00094      0.36      25      46 ..     192     213 ..     190     216 .. 0.92
   2 ?   -1.8   0.0       7.3   2.9e+03      26      43 ..     313     330 ..     311     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00094
  EF-hand_10  25 kLFkkcDkSksgrLegeEieeF 46 
                  +F  cDk ++g+L+++E+ eF
  KKY17501.1 192 RVFYLCDKNRDGFLNDKELDEF 213
                 68999****************9 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 7.3
  EF-hand_10  26 LFkkcDkSksgrLegeEi 43 
                 LF   Dk ++g L   E+
  KKY17501.1 313 LFLLSDKDNDGGLSSTEL 330
                 88899********99986 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0       0.4   1.6e+02      19      40 ..       6      27 ..       4      34 .. 0.82
   2 ?    7.3   0.0    0.0065       2.5      20      38 ..     427     445 ..     407     452 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.4
  Zeta_toxin 19 illgGqpGAGKselaellkdel 40
                i + G  G GKs+l++ l +++
  KKY17501.1  6 ICVCGDEGTGKSSLITSLVKDT 27
                6789**********99887765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0065
  Zeta_toxin  20 llgGqpGAGKselaellkd 38 
                 l+ G+pG+GK++l++++  
  KKY17501.1 427 LIIGAPGSGKTSLLNAFLS 445
                 788***********99875 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.56   2.2e+02       2      22 ..       5      25 ..       4      31 .. 0.87
   2 ?   -0.9   0.0       2.7   1.1e+03     103     120 ..     104     121 ..      69     159 .. 0.66
   3 ?    5.6   0.1     0.027        11       4      21 ..     427     444 ..     424     503 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.56
                EEEEEESTTSSHHHHHHHHHT CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltg 22
                +++++G+  +Gk++l+ +l +
  KKY17501.1  5 RICVCGDEGTGKSSLITSLVK 25
                6899************99975 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.7
                 HTTSSEEEEEETHHHHHH CS
      FeoB_N 103 elgvpvvlalnmideaek 120
                  ++vpvvl+ n++d a++
  KKY17501.1 104 GVNVPVVLCANKSDLATD 121
                 467889999999998865 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.027
                 EEEESTTSSHHHHHHHHH CS
      FeoB_N   4 alvGnpnvGkttlfnalt 21 
                  ++G p +Gkt+l+na  
  KKY17501.1 427 LIIGAPGSGKTSLLNAFL 444
                 589************975 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0055       2.1      35      55 ..       3      23 ..       1      25 [. 0.90
   2 ?    0.3   0.0      0.75   2.9e+02      33      55 ..     421     443 ..     415     445 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0055
                -EEEEEEESTTSSHHHHHHHH CS
        IIGP 35 klkiavtGdsGnGkssFinaL 55
                +++i v Gd G+Gkss i +L
  KKY17501.1  3 TVRICVCGDEGTGKSSLITSL 23
                689***************887 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.75
                 T--EEEEEEESTTSSHHHHHHHH CS
        IIGP  33 saklkiavtGdsGnGkssFinaL 55 
                 +++l+  ++G  G+Gk s +na 
  KKY17501.1 421 RTVLHSLIIGAPGSGKTSLLNAF 443
                 6788999**************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        46  (0.00256568); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              46  [number of targets reported over threshold]
# CPU time: 0.83u 0.35s 00:00:01.18 Elapsed: 00:00:00.54
# Mc/sec: 3564.80
//
Query:       KKY17502.1  [L=394]
Description: hypothetical protein UCRPC4_g05517 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-41  140.4   0.3    5.4e-41  139.3   0.2    1.6  2  Ysc84     Las17-binding protein actin regulator
    4.6e-14   51.8   0.1    1.4e-13   50.2   0.0    1.8  2  SH3_1     SH3 domain
    4.1e-12   45.6   0.1    1.5e-11   43.8   0.0    1.9  2  SH3_2     Variant SH3 domain
    1.4e-09   37.6   0.0    2.6e-09   36.8   0.0    1.5  1  SH3_9     Variant SH3 domain
  ------ inclusion threshold ------
      0.033   14.0   0.1       0.06   13.2   0.1    1.4  1  DUF4741   Domain of unknown function (DUF4741)


Domain annotation for each model (and alignments):
>> Ysc84  Las17-binding protein actin regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.3   0.2   1.5e-44   5.4e-41       2     127 ..      91     215 ..      90     216 .. 0.97
   2 ?   -3.2   0.0       1.8   6.4e+03      33      56 ..     330     353 ..     326     366 .. 0.63

  Alignments for each domain:
  == domain 1  score: 139.3 bits;  conditional E-value: 1.5e-44
       Ysc84   2 gvgaGfqiGvdiydcvlvlntkealeaftkktrvslGgdlsvaaGpvgaggeaeaaaaaklkapvysysksrGlyaGvsldgtviterkdaNaafYgek 100
                 g+g+G qiG + +d+v++ln+ +a++af+++++v+lGg++s+aaGpvg+++ea+ aa+ k+ a v+sysk++Gl+aGvsl+g+v+ er+daN+++Y+ k
  KKY17502.1  91 GGGFGGQIGFELTDFVFILNDAAAVQAFSQQASVTLGGNVSIAAGPVGRNAEAAGAASLKGLAGVFSYSKTKGLFAGVSLEGSVLFERRDANEKLYNGK 189
                 78****************************************************999999*************************************77 PP

       Ysc84 101 gvsveqILrgevpwpaaakeLlevlka 127
                  ++++q+L+g v++p+a+++L++vl++
  KKY17502.1 190 -ITARQLLEGAVRPPPASEPLMRVLNS 215
                 .***********************985 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.8
       Ysc84  33 trvslGgdlsvaaGpvgaggeaea 56 
                 +  +lG+d +va+  + a+  ++ 
  KKY17502.1 330 KTGTLGKDQAVALFTFDADQPGDL 353
                 466888888888866666555554 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.82   2.9e+03      14      27 ..      98     111 ..      96     114 .. 0.83
   2 !   50.2   0.0   3.9e-17   1.4e-13       1      48 []     340     387 ..     340     387 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.82
                 XEBSTTEEEEEEEE CS
       SH3_1  14 LsfkkGDviivlek 27 
                 + f+  D +++l++
  KKY17502.1  98 IGFELTDFVFILND 111
                 578999******97 PP

  == domain 2  score: 50.2 bits;  conditional E-value: 3.9e-17
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSS..SEEEEEETTSTEEEEEEG CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksed..gWwkgrlkgtgkeGliPs 48 
                 +Al+ ++a ++++L fkkG+vi++++++e+  +Ww+gr  +  +eG++Ps
  KKY17502.1 340 VALFTFDADQPGDLGFKKGEVITIIKRTENstDWWTGRIGD--REGIFPS 387
                 79**************************************7..7*****8 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.85   3.1e+03      26      44 ..     234     250 ..     231     255 .. 0.70
   2 !   43.8   0.0   4.1e-15   1.5e-11       2      55 ..     339     391 ..     338     392 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.85
                 EE..EEEECTTE.EEEEECC CS
       SH3_2  26 vlslgskdsdgw.wegevgG 44 
                 v+   + + d+  weg++g 
  KKY17502.1 234 VY---DDRHDNMvWEGRTGQ 250
                 55...55556778***9954 PP

  == domain 2  score: 43.8 bits;  conditional E-value: 4.1e-15
                 EEESS-B-SCGCCB--B-TTEEEEEE..EEEECT.TEEEEEECCCEEEEEGCGEE CS
       SH3_2   2 vraiedyvgedkseLsfkkGdvikvlslgskdsd.gwwegevgGrvGlfPsslve 55 
                 ++a++++++  ++ L fkkG+vi ++  +++++  +ww g+ g r G+fPs++ve
  KKY17502.1 339 AVALFTFDADQPGDLGFKKGEVITII--KRTENStDWWTGRIGDREGIFPSNYVE 391
                 589***********************..6665556*******9999********7 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   7.2e-13   2.6e-09       1      49 []     341     391 ..     341     391 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 7.2e-13
       SH3_9   1 AlypyepreddeLsLqrGDvitvieese..dgWlegsltGrtGlvPanyve 49 
                 Al+ ++++++  L + +G+vit+i+++e   +W+ g+ + r G +P+nyve
  KKY17502.1 341 ALFTFDADQPGDLGFKKGEVITIIKRTEnsTDWWTGRIGDREGIFPSNYVE 391
                 89**********************7754359*******************7 PP

>> DUF4741  Domain of unknown function (DUF4741)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.7e-05      0.06     108     135 ..     279     306 ..     238     316 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
     DUF4741 108 adnqresstwanevedrrpqctpalnlt 135
                  dn r++ twa++v dr p + +a+  t
  KKY17502.1 279 RDNPRRANTWADDVYDRSPSSPSAMGRT 306
                 59*******************9999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2974.69
//
Query:       KKY17503.1  [L=783]
Description: putative telomere silencing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-28   96.4   1.6    9.4e-28   95.7   1.6    1.3  1  Zds_C     Activator of mitotic machinery Cdc14 phosphatase ac


Domain annotation for each model (and alignments):
>> Zds_C  Activator of mitotic machinery Cdc14 phosphatase activation C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   1.6   5.2e-32   9.4e-28       1      52 []     607     658 ..     607     658 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.7 bits;  conditional E-value: 5.2e-32
       Zds_C   1 vpdvvmydtRfpihvERaiYRlsHlKLanprRpLreQVLlSNfMYsYLnlvn 52 
                 +pd+++++tRf +  ERaiYR++H+KLanprR+L++QVLlSNfMYsYL++v+
  KKY17503.1 607 KPDIDYNWTRFSLLEERAIYRMAHMKLANPRRALYSQVLLSNFMYSYLAKVQ 658
                 599***********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (783 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2720  (0.15171); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.49
# Mc/sec: 4776.02
//
Query:       KKY17504.1  [L=312]
Description: putative 5methylthioadenosine phosphorylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-39  135.6   0.0      2e-39  135.2   0.0    1.1  1  PNP_UDP_1  Phosphorylase superfamily


Domain annotation for each model (and alignments):
>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.2   0.0   1.1e-43     2e-39       2     233 ..      14     263 ..      13     264 .. 0.84

  Alignments for each domain:
  == domain 1  score: 135.2 bits;  conditional E-value: 1.1e-43
                 EEEEESSH....HHHHHHHHHEEEEEEEEEE.TTEEEEEEEE.....TTEEE...EEEE--....SSHHHHHHHHHHHHHHHC--SEEEEEEEEEESST CS
   PNP_UDP_1   2 iaiivgsp....gevellaespleetpfgregrgfkfvtGtl.....kgkpv...vivstG....iGkpnaavvaeirllkefgvkaiiriGtaGglnp 84 
                 ia+i+g++    + +  +a+    +tp+g++  +  +++ ++     +  pv   ++ ++G    i ++ ++ +a+i++l + gv++ii+++++G+l++
  KKY17504.1  14 IAVIGGTGlqdlPHFTKVASL-TISTPWGEP--SSPITILSHpsptpGSPPVpiaFLSRHGlgheIAPHEVNSRANIAALRSIGVRTIIAFSAVGSLQE 109
                 788888888555555555555.888888888..5555555555677533333334789999999999999999************************** PP

                 TT-TT-EEEEEEEEE.SSSCCGCCTHHCCTCCCCTTSSEE--HHHHHHHHH...CHHTTTTTEEE.EEEEEESESS-CHHHHHHHHHHTC-CEEESSHH CS
   PNP_UDP_1  85 dlkvGDvvipddain.fdgrsplygpkeegqyfpdsydapadpelrallke...aaealgikvhr.GvvatadgfyaeteaelrllrrlgadaveMEta 178
                 ++k+ D+vipd++i+   g +p ++++++++++++++d+ +d+ l +++++   ++e  g+ +h  G++++++g++++t+ae+r++r++g ++++M++ 
  KKY17504.1 110 HIKPRDFVIPDQIIDrSKGIRPFTYFESGFVGHVMFADP-FDEGLARIVRQcghSLEGDGVVLHDrGTIICMEGPQFSTRAESRMYRSWGGSVINMSAL 207
                 ***************766667777777779*********.***********999999999998888********************************* PP

                 HHHHHHHHTT--EEEEEEEEETTTBETTCTCH...HCCCHHHHHHHHHHHHHHHHHH CS
   PNP_UDP_1 179 avaqlArelgipfaairvvsdlaaggadaeath..eeveefaqeaaknaaalllall 233
                 ++a lAre++i +  i++ +d ++ + + e+ +  e v+  +++++ na +++ a+l
  KKY17504.1 208 PEAKLAREAEIAYQMICMSTD-YDCWRESEEVVtvELVMGHMKANSANARRFVGAVL 263
                 *********************.88877666655669999999999999999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 1954.70
//
Query:       KKY17505.1  [L=326]
Description: putative short-chain dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-19   70.3   0.0    2.8e-19   69.4   0.0    1.4  2  adh_short     short chain dehydrogenase
    3.6e-09   36.5   0.0    7.2e-09   35.5   0.0    1.5  2  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    0.00034   20.6   0.0    0.00047   20.1   0.0    1.2  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   4.6e-23   2.8e-19       2     124 ..       4     128 ..       3     149 .. 0.90
   2 ?   -3.6   0.0       1.1   6.5e+03     146     160 ..     180     194 ..     174     200 .. 0.74

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 4.6e-23
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT....TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGC CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee....gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfsel 96 
                 v++vtG+ sGIG++++  l++++a+v++++rs+ k++ +++++k++    + +++++++D++d + ++ +v +  +   +ld+L+nNAG+   ++  + 
  KKY17505.1   4 VIIVTGGYSGIGYELSSILYAANATVYIAGRSSTKAASAISSIKSAhptsSGTLTFLSIDLSDLRTIKPFVTTFLSSSSRLDILYNNAGLM--HEPPSQ 100
                 89******************************************999888888*************************************4..444456 PP

                 SHHHHHHHHHHHTHHHHHHHHHHHHHHH CS
   adh_short  97 seeewervievNltgvflltravlpaml 124
                 + +  e v+++N+ g+fll+++++p + 
  KKY17505.1 101 TPQGQETVYSTNILGPFLLAKLLTPILE 128
                 777789******************9976 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.1
                 BHHHHHHHHHHHHHH CS
   adh_short 146 vaaYsAsKaavaglt 160
                 +  Y  sKaa+  ++
  KKY17505.1 180 YFNYNNSKAAIYYIS 194
                 567999999986655 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   1.2e-12   7.2e-09       4     119 ..      12     129 ..       7     142 .. 0.90
   2 ?   -2.5   0.0       0.5     3e+03     124     148 ..     162     190 ..     135     199 .. 0.65

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 1.2e-12
                   TSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE...E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae...v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94 
                   sgIG+++   l ++ a+v ++ ++  + ++++ +++++++++   +  l +D +d  +++ +v +  ++  +lDil nnag +++      + + ++
    KKY17505.1  12 SGIGYELSSILYAANATVYIAGRSSTKaASAISSIKSAHPTSsgtLtfLSIDLSDLRTIKPFVTTFLSSSSRLDILYNNAGLMHE--P--PSQTPQG 104
                   8************************99999999999999855454267************************************9..3..4778999 PP

                   HHHHHHHHTHHHHHHHHHHHHHCTS CS
  adh_short_C2  95 fdraldvnlyslfllakaalplmke 119
                    +++ ++n+ + fllak + p++++
    KKY17505.1 105 QETVYSTNILGPFLLAKLLTPILES 129
                   9*******************98876 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.5
                   EEEEEGGGTSB....STTTTHHHHHHHHH CS
  adh_short_C2 124 vnlssvgaerv....vpnynaygaaKaal 148
                   v  +s +ae +     + y  y+ +Kaa+
    KKY17505.1 162 VQFTSDSAESSsltiSNRYFNYNNSKAAI 190
                   55555544433211145555899999997 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   7.9e-08   0.00047       2      96 ..       4      98 ..       3     128 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 7.9e-08
                EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------- CS
          KR  2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkl 96
                + ++tGG+ g+G el+  l++  ++++ + +Rs+++ +++ + i++ + +   + +++++D+sd   ++  ++++ ++ +++   ++ Ag++++ +
  KKY17505.1  4 VIIVTGGYSGIGYELSSILYAA-NATVYIAGRSSTKAASAISSIKSAHPTsSGTLTFLSIDLSDLRTIKPFVTTFLSSSSRLDILYNNAGLMHEPP 98
                789*************999876.56899*****777777777777777663559*********************999999999999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2224.18
//
Query:       KKY17506.1  [L=206]
Description: hypothetical protein UCRPC4_g05521 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 1294.38
//
Query:       KKY17507.1  [L=712]
Description: putative wd repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-11   43.4   2.0    4.4e-11   42.4   2.0    1.5  1  NUC153       NUC153 domain
     0.0031   18.3   0.0    1.3e+02    3.7   0.0    4.8  4  WD40         WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.057   13.7   0.0       0.47   10.8   0.0    2.5  2  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> NUC153  NUC153 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   2.0   7.3e-15   4.4e-11       1      29 []     542     570 ..     542     570 .. 0.97

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 7.3e-15
      NUC153   1 DpRFkalFedhdFaIDptspeFkktnpmk 29 
                 D+RF++lF+d+dF++D+ts+eF+  np++
  KKY17507.1 542 DSRFAKLFQDEDFEVDETSHEFRSINPST 570
                 9**************************96 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.025   1.5e+02      15      34 ..      57      77 ..      33      78 .. 0.79
   2 ?    3.7   0.0     0.021   1.3e+02      12      38 .]     252     278 ..     240     278 .. 0.81
   3 ?    2.7   0.0     0.044   2.7e+02      25      38 .]     317     329 ..     297     329 .. 0.84
   4 ?    1.4   0.0      0.12     7e+02      12      28 ..     344     360 ..     337     367 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.025
                EEEEETTSSEEE.EEETTSEE CS
        WD40 15 slafspdgawla.sGsdDgtv 34
                +++ s+dg+w + +G++++ +
  KKY17507.1 57 CIRISDDGQWAMsTGTYKPQI 77
                899*******65367666655 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.021
                 SEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriWd 38 
                 +vt+l+f+++g   a G+ +g ++++d
  KKY17507.1 252 GVTALDFHRSGMTTAVGTSNGLIYLYD 278
                 39***********888966***99998 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.044
                 EEEEETTSEEEEEE CS
        WD40  25 lasGsdDgtvriWd 38 
                 ++s++ ++ ++iW+
  KKY17507.1 317 ILSAD-KRIIKIWN 329
                 56666.*******8 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.12
                 SEEEEEEETTSSEEEEE CS
        WD40  12 svtslafspdgawlasG 28 
                 +++++a+++d  +++++
  KKY17507.1 344 DINCVAWCKDTGMILTA 360
                 49******999888876 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.9e-05      0.47       5      69 ..     212     281 ..     208     302 .. 0.80
   2 ?   -1.3   0.0      0.45   2.7e+03      61      91 ..     324     352 ..     317     362 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.9e-05
  ANAPC4_WD40   5 ptmDLiAlatedgellvfRl.ngqrvwtl....eedkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  ++ +L+A++t+ g ++     +  rv tl    ++ +    v++L ++ +g   av++s+g + l+d  s
   KKY17507.1 212 ESHNLMAFGTSLGTVEYWDSrSRDRVATLqpptDQFEGTIGVTALDFHRSGMTTAVGTSNGLIYLYDLRS 281
                  567788888888888765443778999997765555666789************************9876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.45
  ANAPC4_WD40  61 evrlldaesgkvvhslsvksekavtclgWge 91 
                   +++ +  +g    s++ + +  ++c+ W++
   KKY17507.1 324 IIKIWNERDGSPWTSVEPAVD--INCVAWCK 352
                  566677777777777777666..88888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.54
# Mc/sec: 3947.74
//
Query:       KKY17508.1  [L=977]
Description: hypothetical protein UCRPC4_g05523 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-14   53.7   0.8    3.9e-14   52.8   0.8    1.5  1  Med13_N      Mediator complex subunit 13 N-terminal
    7.8e-12   45.5   0.3    1.5e-10   41.3   0.1    2.6  2  MID_MedPIWI  MID domain of medPIWI


Domain annotation for each model (and alignments):
>> Med13_N  Mediator complex subunit 13 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.8   4.3e-18   3.9e-14     123     311 ..      28     222 ..      13     223 .. 0.86

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 4.3e-18
     Med13_N 123 alFlkAvrkrislnlsrsrgviplgnrtl.....sseedaeesegsesllrlrpqltesgdlllslstikqpgllrltsslplssslallsgtpvyLaP 216
                 + Fl ++ + + ++ +r + ++ l+ rt+     + +   + s ++ s++rl++qlt s +l+ls +  ++ +l +++s + +    +l++  + +LaP
  KKY17508.1  28 RNFLYSLLAKLDDSMNRTSHMTLLNARTVvirslNGDVGELASHECLSIARLDLQLTDS-KLVLSVKELRNENLKSVDSLIKSKAIDSLQPQSDALLAP 125
                 679****************************9998899999999999*********987.677799*************6666665559********** PP

     Med13_N 217 sGirArllst.sgptsklteqsesslltlpaensw.elllewlkeshgidl.edeaWvevepk.lahlngqtssiasndqgedkgkrilWPaeLcflqd 311
                 +G + r+ +  ++ +  ++e  es   ++ ++ sw +++l+wl +  gi +  deaWv++e+      + +  ++   +      + ilWP++L+f+++
  KKY17508.1 126 CGKVVRYKGIrHP-HEDNVERAESLHRAPFHQSSWqSSVLSWLQNY-GIEPdADEAWVDIEVIiPWETDVKADQEGGKERDLHMLQSILWPSSLIFSRS 222
                 **********555.4444444466666777777779**********.****9999****9999867777777777778888889999*********986 PP

>> MID_MedPIWI  MID domain of medPIWI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.1   1.7e-14   1.5e-10       1      40 [.     774     813 ..     774     844 .. 0.82
   2 ?    1.3   0.0     0.027   2.4e+02     233     245 ..     853     865 ..     839     866 .. 0.84

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 1.7e-14
  MID_MedPIWI   1 kdvayvvvcPdneallsaaksFfrdLsavYEsCrLGqHrp 40 
                  +dv  +++cP+ne+++++ +sF+++Ls vY+ C LG+H+ 
   KKY17508.1 774 RDVLSLCLCPENESIVECSQSFMSQLSHVYQGCSLGEHSA 813
                  9*************************************87 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.027
  MID_MedPIWI 233 lkslAfsVYsqcr 245
                    +lA++VY++c+
   KKY17508.1 853 FFRLALEVYDRCP 865
                  568*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (977 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 6187.52
//
Query:       KKY17510.1  [L=528]
Description: hypothetical protein UCRPC4_g05483 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        1.9    7.8   7.4        4.9    6.4   7.4    1.6  1  NOA36           NOA36 protein


Domain annotation for each model (and alignments):
>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.4   0.00027       4.9     229     297 ..     109     182 ..     100     190 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00027
       NOA36 229 strslkfgrqkqadgs...ddddddeed.sdydaylkalasg.ddeddegdedddddddeedddeeeddedeee 297
                 +tr + fg ++ +++    +  d+ e++ s ++ y +  + + d+++ ++++d ++dd+ e d++eed+e+e++
  KKY17510.1 109 TTRIKDFGSEDLQSAYyiwEGGDQFEDEpSIFKIYPTGESPSsDKKHSKAASDGEEDDESEYDNSEEDEENEDD 182
                 56666666655443321113333333331344555444333314555555566555555555555555444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1326  (0.0739584); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.52
# Mc/sec: 3067.67
//
Query:       KKY17511.1  [L=877]
Description: putative wd repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-25   89.6   0.0      2e-21   76.7   0.0    2.7  3  Peptidase_M20  Peptidase family M20/M25/M40
    3.8e-13   49.7   8.9      0.011   16.6   0.0    6.3  6  WD40           WD domain, G-beta repeat
    2.3e-06   27.8   0.1       0.22   11.8   0.0    4.4  4  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
     0.0015   18.4   0.0     0.0042   17.0   0.0    1.7  1  M20_dimer      Peptidase dimerisation domain
      0.002   17.5   0.1       0.29   10.4   0.0    2.4  2  WD40_like      WD40-like domain
      0.005   16.6   0.0      0.016   14.9   0.0    1.9  2  Peptidase_M28  Peptidase family M28
  ------ inclusion threshold ------
      0.043   12.8   0.0      0.076   12.0   0.0    1.3  1  Peptidase_M42  M42 glutamyl aminopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         1   2.6e+03     156     194 ..     360     407 ..     330     410 .. 0.72
   2 !   76.7   0.0   7.6e-25     2e-21       1     170 [.     471     801 ..     471     814 .. 0.87
   3 !    9.7   0.0   0.00025      0.64     168     205 ..     825     863 ..     815     865 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1
                    ES.SSBHTHHHH.TTT.EEE.EE.EE.SSG..GCTTSTTTEEE.HHHH CS
                    xx.xxxxxxxxx.xxx.xxx.xx.xx.xxx..xxxxxxxxxxx.xxxx RF
  Peptidase_M20 156 sg.pggtdarff.agi.ptv.mi.fg.pgs..glaHspnEyvd.ledl 194
                    s  +g+ d +f+  g+  t+ ++  g +g     +H+++E ++ l+dl
     KKY17511.1 360 STaSGSPDLAFIsGGTdNTIsFWdAGrTGTrrTSIHGNDEMLRsLRDL 407
                    345689999999756655675568775553569999999998766665 PP

  == domain 2  score: 76.7 bits;  conditional E-value: 7.6e-25
                    EEEEES-BSS..TTCGGG...SSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHHHHH.TTT CS
                    xxxxxxxxxx..xxxxxx...xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
  Peptidase_M20   1 llgsHlDvVp..eeetdg...wtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakallegle.ere 89 
                    l+++H+DvV   ++++ +   w+t pf+lt  +G+lyGrG++d+kg ++aa++a+++l ++  +++ ++v+l+++ EE+g+ G +  + + +    
     KKY17511.1 471 LFYGHYDVVDadTNQS-RakkWNTdPFKLTPLNGYLYGRGVSDDKGPIVAAIYAVAELLQRE-ELNCDVVFLLEGQEETGSQGFEDAVRHNKpIIG 564
                    79********753333.2456***************************************96.78*************655555444443222234 PP

                    CESEEEEEEEESSSBTCHSTETEEEE...................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxx...................................................................... RF
  Peptidase_M20  90 kvdavfelhieepgileagklaigvv...................................................................... 115
                    ++d+   +++   +++++++ ++ ++                                                                      
     KKY17511.1 565 EIDH---VLVA-NSYWHDDR-VPCLTygmrgvihatiriesnmpdrhsgmdgraaeheplkdltallgmlvgpdathvmipgfyediaapapeeqr 655
                    5555...4477.88888555.5555579999999999999******************************************************** PP

                    ...........................................................................................EEEEE CS
                    ...........................................................................................xxxxx RF
  Peptidase_M20 116 ...........................................................................................kveve 120
                                                                                                               + +v+
     KKY17511.1 656 ryktitdalmpfhpeissseayskslqqkwsmpnltyhqietpepksavtiarsaeapisirvvpgqcaatiadslrsyleerfaqiggsnRLTVQ 751
                    ******************************************************************************************846666 PP

                    EEEEESHEEEC.CHHHHHHHHHHHHHHHTSCEEEEEES.SSBHTHHHHTTTE CS
                    xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Peptidase_M20 121 lleggapvtln.dsplvkalaeaaeelfgekvelivsg.pggtdarffagip 170
                      +++ ++  + +++++ +l++a+++++    +l+ ++ +g+ d++++ ++p
     KKY17511.1 752 VSSASDAWLGDpHNEIFSTLSAAISRIWR--SRLSSKSdIGSDDSGYITHLP 801
                    559***********************996..456655578999999997776 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00025
                    TTEEEEE.EESSGGCTTSTTTEEEHHHHHHHHHHHHHHH CS
                    xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 168 giptvmi.fgpgsglaHspnEyvdledlekgikvlarll 205
                    g p++m+ +g +s++aH  nE++++e+l+ + +v+ ++ 
     KKY17511.1 825 GAPAAMFpCGQSSDNAHLDNERIRVENLYVAREVFREVF 863
                    6699999999777*********************99875 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.1e-06     0.011       2      38 .]      76     113 ..      75     113 .. 0.93
   2 ?    3.5   0.1     0.058   1.5e+02       6      29 ..     123     148 ..     118     155 .. 0.76
   3 !   15.9   0.0   6.8e-06     0.017       8      38 .]     218     256 ..     212     256 .. 0.88
   4 ?   -0.9   0.0       1.4   3.6e+03       6      37 ..     270     300 ..     260     301 .. 0.64
   5 ?    0.8   0.0      0.43   1.1e+03      13      35 ..     324     338 ..     308     341 .. 0.65
   6 !   11.8   0.2   0.00013      0.35      17      38 .]     356     383 ..     343     383 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.1e-06
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++l++  +H +sv sl  s d+++l+sG+ D +v +W+
  KKY17511.1  76 ELLHSAPAHeNSVLSLHLSEDKQLLFSGGADSSVGVWS 113
                 5788889******************************5 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.058
                 EEESS..SSEEEEEEETTSSEEEEEE CS
        WD40   6 tltGH..ssvtslafspdgawlasGs 29 
                 +++ H  +++ +la+s+  ++l++G+
  KKY17511.1 123 IISHHdvGDIFCLAYSSRMQLLLCGT 148
                 445667667********999999997 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 6.8e-06
                 ESS.SSEEEEE.......EETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtsla.......fspdgawlasGsdDgtvriWd 38 
                 ++H s vt+l         +p++  l+sG+ Dg +++Wd
  KKY17511.1 218 SAHdSYVTALLlidglhpANPNQEVLVSGGADGAIKFWD 256
                 6896669999999999999999999*************9 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.4
                 EEESSSS....EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   6 tltGHss....vtslafspdgawlasGsdDgtvriW 37 
                 +++   s    v +l    + ++l +G+  g +r++
  KKY17511.1 270 KFK---SpalgVQCL--AYSEPFLYAGMTRGQIRVY 300
                 333...144558899..4466668888778888886 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.43
                 EEEEEEETTSSEEEEEETTSEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvr 35 
                 + ++        +++G+ Dg v+
  KKY17511.1 324 IQGV--------IFCGTADGQVK 338
                 4555........889*99**998 PP

  == domain 6  score: 11.8 bits;  conditional E-value: 0.00013
                 E.......EETTSSEEEEEETTSEEEEEE CS
        WD40  17 a.......fspdgawlasGsdDgtvriWd 38 
                 +        spd a++ sG+ D+t+ +Wd
  KKY17511.1 356 KilastasGSPDLAFI-SGGTDNTISFWD 383
                 4555555589*****8.7988*******9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   8.6e-05      0.22      32      90 ..      72     138 ..      43     140 .. 0.80
   2 ?    2.1   0.0     0.093   2.4e+02      28      77 ..     119     168 ..     116     174 .. 0.78
   3 ?    4.2   0.0     0.021        53      47      90 ..     237     284 ..     229     286 .. 0.78
   4 !    7.2   0.0    0.0023         6      41      87 ..     278     321 ..     266     325 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.6e-05
  ANAPC4_WD40  32 l.......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek.avtclgWg 90 
                  l       ++++++++v sL+ ++d +lL  + +d++v + +a+s k ++++  +++   + cl ++
   KKY17511.1  72 LdtfellhSAPAHENSVLSLHLSEDKQLLFSGGADSSVGVWSAKSLKRISTIISHHDVgDIFCLAYS 138
                  23333344578999***********************************999888775578888876 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.093
  ANAPC4_WD40  28 rvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsls 77 
                  r+ t+ ++++ + + +La++   +lL  +++  +++ ++ e+++  +s +
   KKY17511.1 119 RISTIISHHDVGDIFCLAYSSRMQLLLCGTQSQSLQWYHLEEAESSESRK 168
                  55555556667788999999999999999999999999999988776655 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.021
  ANAPC4_WD40  47 kpdgklLavaysdgevrlldae.....sgkvvhslsvksekavtclgWg 90 
                  +p+ ++L+ + +dg++++ d++     + +++h+++  +   v+cl ++
   KKY17511.1 237 NPNQEVLVSGGADGAIKFWDISrighsTPQIIHKFKSPAL-GVQCLAYS 284
                  6899**************9985222225688888887777.58888876 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0023
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                  v++La++  + +L  ++  g++r++++es k v+++ + s++ vt++
   KKY17511.1 278 VQCLAYS--EPFLYAGMTRGQIRVYSMESRKFVQKIFICSSD-VTTI 321
                  6666664..679**********************98776664.7666 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.6e-06    0.0042       2     106 ..     587     740 ..     586     742 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.6e-06
                 EB-EEEEEEEE..EE-B-EEGG-TTTTB-..HHHHHHHHHHCSCTTEEC................................................TC CS
   M20_dimer   2 ghkGlaggkit..vkgkagHsgapgagaN..Aieklarllaeledeegdia...........................................eersl 53 
                 g +G++ ++i+   +  + Hsg+ g++a   +++ l  ll  l   +                                               +++ +
  KKY17511.1 587 GMRGVIHATIRieSNMPDRHSGMDGRAAEhePLKDLTALLGMLVGPDATHVmipgfyediaapapeeqrryktitdalmpfhpeissseaysksLQQKW 685
                 56666666666446666778885555544478888888888887664443378888888888888888888888899999999999999999999999* PP

                 CTCCCCCEECCE-C..CCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSCCS CS
   M20_dimer  54 prttlnvtgiegGs..aknvipdeaeakidiRllpgedpeevleeieeilekeap 106
                 + ++l+  +ie     ++ +i+++aea i+iR++pg+ ++++ + ++++le++ +
  KKY17511.1 686 SMPNLTYHQIETPEpkSAVTIARSAEAPISIRVVPGQCAATIADSLRSYLEERFA 740
                 ************9899999********************************9865 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0     0.007        18       3      78 ..      88     166 ..      86     173 .. 0.80
   2 !   10.4   0.0   0.00011      0.29      58     110 ..     290     343 ..     236     358 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.007
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfed.Svifvkllddd..lilvvtlDGtillslleneeeven 78 
                 + s+ +s++ +l+  Gg d  + v + +sl+ +s + s +d   if+   +    l+l++t    +  + le+ e+ e+
  KKY17511.1  88 VLSLHLSEDKQLLFSGGADSSVGVWSAKSLKRISTIISHHDvGDIFCLAYSSRmqLLLCGTQSQSLQWYHLEEAESSES 166
                 678999*************************998877777624689988877655888888888888888877775554 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00011
   WD40_like  58 vvtlDGtillslleneeeveneki.eedistvkviddklliGtnkGsiyvfskd 110
                  +   G+i  + +e  + v++  i   d++t+++i++ +  Gt  G++  f+ +
  KKY17511.1 290 AGMTRGQIRVYSMESRKFVQKIFIcSSDVTTIQIIQGVIFCGTADGQVKRFNTQ 343
                 344569999999999998877655378*********************999987 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.2   5.6e+03      75     109 ..     209     242 ..     206     259 .. 0.76
   2 !   14.9   0.0   6.3e-06     0.016       8      83 ..     463     557 ..     454     575 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.2
                    SHHHHHHHHHHCCCTTEEEEEEECS-SSSS--EEE CS
  Peptidase_M28  75 llGSkafakakpelkkiaavlnlDmvgsggkellf 109
                    l+G +  + ++ + + + a+l++D +   +++  +
     KKY17511.1 209 LFGTRDIV-NSAHDSYVTALLLIDGLHPANPNQEV 242
                    78889999.77788889999999999988887665 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 6.3e-06
                    TTCESEEEEEEEE--B-TTT...................TCC.T---T.TTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHHHH CS
  Peptidase_M28   8 gkatdevlllgAHyDsvgvg...................rgp.ifvGA.dDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEagllGSkafa 82 
                    g ++ +++l+ +HyD v  +                   +g     G+ dD +  vaa+  +a++l++  ++++ +v+fl+ + EE g +G +  +
     KKY17511.1 463 GAQPRKRVLFYGHYDVVDADtnqsrakkwntdpfkltplNGYlYGRGVsDDKGPIVAAIYAVAELLQR--EELNCDVVFLLEGQEETGSQGFEDAV 556
                    333378************999****9999988888777644454456625668888999999999998..479*************9999977777 PP

                    H CS
  Peptidase_M28  83 k 83 
                    +
     KKY17511.1 557 R 557
                    4 PP

>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     3e-05     0.076     134     182 ..     512     561 ..     499     593 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3e-05
                    HHHHH.HHHHHHHHHHHCTSS-SSEEEEEEESTCTTTSHHHHHHHHHH-- CS
  Peptidase_M42 134 Ddrag.vavllellkelkeeeleatvylvatvqEEvGlrGaktsaekikp 182
                    Dd+   va+++++++ l++eel+++v+++   qEE G +G + ++++ kp
     KKY17511.1 512 DDKGPiVAAIYAVAELLQREELNCDVVFLLEGQEETGSQGFEDAVRHNKP 561
                    66665256677888899***********************9888777555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (877 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.49
# Mc/sec: 5399.37
//
Query:       KKY17512.1  [L=393]
Description: putative wd repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-33  114.2  15.8    7.8e-09   36.0   0.1    6.8  6  WD40         WD domain, G-beta repeat
    2.9e-14   53.1   0.0     0.0031   17.8   0.0    4.5  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    3.6e-06   25.9   0.4      0.047   12.3   0.1    2.7  3  Nup160       Nucleoporin Nup120/160
    0.00018   21.5   0.0    0.00035   20.5   0.0    1.5  1  eIF2A        Eukaryotic translation initiation factor eIF2A
     0.0017   17.7   0.0     0.0034   16.7   0.0    1.6  2  WD40_like    WD40-like domain
  ------ inclusion threshold ------
      0.029   12.7   0.0      0.074   11.4   0.0    1.5  2  Frtz         WD repeat-containing and planar cell polarity ef
      0.029   13.3   0.0       0.37    9.7   0.0    2.2  2  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
       0.11   11.8   0.1        7.3    5.8   0.0    2.3  2  Nbas_N       Neuroblastoma-amplified sequence, N terminal
       0.15   12.2   9.9       0.19   11.8   9.9    1.2  1  YL1          YL1 nuclear protein
       0.16   10.8   0.3        1.6    7.5   0.1    2.6  3  PALB2_WD40   Partner and localizer of BRCA2 WD40 domain
       0.17   11.2  10.4       0.23   10.8  10.4    1.2  1  BUD22        BUD22
       0.29   11.3   1.9        1.4    9.0   2.8    1.7  2  CPSF100_C    Cleavage and polyadenylation factor 2 C-terminal
       0.39    8.9  14.1       0.49    8.5  14.1    1.1  1  Nop14        Nop14-like family
        1.9    7.8  18.4        2.6    7.4  18.4    1.1  1  SDA1         SDA1
        3.4    6.1   8.8        4.3    5.8   8.8    1.1  1  RRN3         RNA polymerase I specific transcription initiati
        4.7    6.7   8.5          6    6.3   8.5    1.1  1  Lin-8        Ras-mediated vulval-induction antagonist


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   0.00019      0.21      25      37 ..       2      14 ..       1      14 [. 0.94
   2 !   26.4   0.1   7.6e-09   8.5e-06       7      38 .]      26      58 ..      22      58 .. 0.94
   3 !   36.0   0.1   6.9e-12   7.8e-09       3      38 .]      64     100 ..      62     100 .. 0.92
   4 !   19.7   0.0     1e-06    0.0011       1      38 []     104     143 ..     104     143 .. 0.88
   5 !   15.9   1.3   1.6e-05     0.017       1      38 []     147     199 ..     147     199 .. 0.81
   6 !    8.9   0.0    0.0026         3      22      37 ..     235     251 ..     213     252 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00019
                EEEEETTSEEEEE CS
        WD40 25 lasGsdDgtvriW 37
                la+GsdD+t+r+W
  KKY17512.1  2 LATGSDDKTIRLW 14
                89*********** PP

  == domain 2  score: 26.4 bits;  conditional E-value: 7.6e-09
                EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38
                l GH + ++sl+fsp g+ l+sGs D  v++Wd
  KKY17512.1 26 LIGHhNYIYSLSFSPKGNILVSGSFDEAVYLWD 58
                6799899*************************9 PP

  == domain 3  score: 36.0 bits;  conditional E-value: 6.9e-12
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +rtl +H ++v++++f++dg++l+s+s Dg +riWd
  KKY17512.1  64 IMRTLPAHsDPVRGVDFNRDGTLLVSCSSDGLIRIWD 100
                 5799****666****************88*******9 PP

  == domain 4  score: 19.7 bits;  conditional E-value: 1e-06
                 TEEEEEEESSSS...EEEEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40   1 gqclrtltGHss...vtslafspdgawlasG.sdDgtvriWd 38 
                 gqclrtl  H +   v+s++fsp++++++ + + D  +r+Wd
  KKY17512.1 104 GQCLRTL-VHEDrrqVSSVRFSPNSRYIV-AwTLDERIRLWD 143
                 79*****.5944589************98.7777*******9 PP

  == domain 5  score: 15.9 bits;  conditional E-value: 1.6e-05
                 TEEEEEEESS.SS...EEEEE..............EETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ss...vtsla..............fspdgawlasGsdDgtvriWd 38 
                 g+c++t+ GH +                          d+a+l+sGs+Dg++  Wd
  KKY17512.1 147 GKCVKTYQGHsNKsysL---TgtvaayepsassgpSGTDHAFLLSGSEDGSIWAWD 199
                 79********7334664...3333588899999999999999**********9998 PP

  == domain 6  score: 8.9 bits;  conditional E-value: 0.0026
                 SSEE.EEEETTSEEEEE CS
        WD40  22 gawl.asGsdDgtvriW 37 
                 g+ l +s+++D+++r+W
  KKY17512.1 235 GNILmISAGEDRKIRLW 251
                 4554268899******* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.2e-06    0.0091      36      81 ..      28      73 ..       1      74 [. 0.85
   2 !   17.8   0.0   2.7e-06    0.0031      38      81 ..      72     115 ..      70     119 .. 0.88
   3 !   11.2   0.0    0.0003      0.34      37      82 ..     114     159 ..     111     168 .. 0.90
   4 ?    4.6   0.0     0.037        41      49      90 ..     182     227 ..     180     230 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.2e-06
  ANAPC4_WD40 36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81
                 ++ + + sL+++p+g++L+ +  d +v l d+ s++++++l+++s+
   KKY17512.1 28 GHHNYIYSLSFSPKGNILVSGSFDEAVYLWDVRSARIMRTLPAHSD 73
                 5677899**********************************99986 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 2.7e-06
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +  vr++ ++ dg+lL+   sdg +r+ d  +g+++++l  ++ 
   KKY17512.1  72 SDPVRGVDFNRDGTLLVSCSSDGLIRIWDTMTGQCLRTLVHEDR 115
                  5689********************************99866655 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.0003
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek 82 
                  + ++v+s++++p+ + ++  + d ++rl d   gk+v++++ +s+k
   KKY17512.1 114 DRRQVSSVRFSPNSRYIVAWTLDERIRLWDYGLGKCVKTYQGHSNK 159
                  6789************************************999876 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.037
  ANAPC4_WD40  49 dgklLavaysdgevrlldaesgkvvhslsvksek....avtclgWg 90 
                  d  +L  + +dg++   d+es++++ ++ ++ ++    +v  + W+
   KKY17512.1 182 DHAFLLSGSEDGSIWAWDVESKDILWTSGAGVHTgpifEVEVMRWN 227
                  567999*******************999888877788888888887 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.2   1.4e+03     231     255 ..      43      67 ..      35      82 .. 0.85
   2 !   12.3   0.1   4.2e-05     0.047     229     258 ..      83     112 ..      58     125 .. 0.79
   3 !   11.6   0.0     7e-05     0.078     228     313 ..     123     204 ..     113     206 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.2
                 TEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 231 tylfalsrdgkLrvWnlltgkclat 255
                 ++l++ s d  + +W+++++++++t
  KKY17512.1  43 NILVSGSFDEAVYLWDVRSARIMRT 67 
                 7788889999999******999988 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 4.2e-05
                 TTTEEEEEETT-EEEEEETTTTEEEEEEE- CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclatidl 258
                 + t+l++ s+dg +r+W++ tg+cl+t   
  KKY17512.1  83 DGTLLVSCSSDGLIRIWDTMTGQCLRTLVH 112
                 77999*********************9443 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 7e-05
                 ...TTTEEEEEETT-EEEEEETTTTEEEEEEE--.-SSSTTS--SSEESEEESSSSEEEE..........E--GGG-EEEEEEEEEEE CS
      Nup160 228 i..gqtylfalsrdgkLrvWnlltgkclatidllrdeeaqdessskstldpaesslirvsdggqsylvvtyspssggefkvwkvkked 313
                    ++ y++a ++d ++r+W++  gkc+ t +      + ++ s   t++ +e s ++  +g +  + +  s s++g++  w+v+++d
  KKY17512.1 123 FspNSRYIVAWTLDERIRLWDYGLGKCVKTYQGH----SNKSYSLTGTVAAYEPSASSGPSGTDHAFLL--SGSEDGSIWAWDVESKD 204
                 234899************************5555....3334444435555555555555788888888..88999999999988765 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.1e-07   0.00035      59     168 ..      30     140 ..      17     161 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.1e-07
                 SS.EEEEEE-TTSS-EEEEESSSSCEEEEEECS...CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-T...T--EEEE CS
       eIF2A  59 egpihdvaWspkskefaviyGkmpakvslfdlk...vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaa...natlvew 151
                 ++ i+ ++ spk++  +++ G  ++ v+l+d++   +  +   ++++   + f+  g+l++ +    l   + iwd+ + +++ ++ ++   + ++v +
  KKY17512.1  30 HNYIYSLSFSPKGN--ILVSGSFDEAVYLWDVRsarIMRTLPAHSDPVRGVDFNRDGTLLVSCSSDGL---IRIWDTMTGQCLRTLVHEdrrQVSSVRF 123
                 55688888888887..689*************84223333344566788899**********987665...*******887777766542227899*** PP

                 -TTSSEEEEEE-TTT-S CS
       eIF2A 152 spdgryvlTattaprlr 168
                 sp++ry++  t   r+r
  KKY17512.1 124 SPNSRYIVAWTLDERIR 140
                 ********999877766 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.1e-06    0.0034       3      74 ..      33     105 ..      31     152 .. 0.87
   2 ?   -3.6   0.0       4.8   5.3e+03     268     296 ..     183     211 ..     181     214 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.1e-06
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilv.vtlDGtillsllenee 74 
                 iYs+ +s+kg++++ G+ d+ + + +++s  ++  +   +d v  v +  d  +lv ++ DG i   +   ++
  KKY17512.1  33 IYSLSFSPKGNILVSGSFDEAVYLWDVRSARIMRTLPAHSDPVRGVDFNRDGTLLVsCSSDGLIRIWDTMTGQ 105
                 9***********************************************99997666599*****776665555 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.8
   WD40_like 268 etfkllesgvGviydmkfenntiyvgGea 296
                 ++f l  s+ G+i+   +e+  i+++  a
  KKY17512.1 183 HAFLLSGSEDGSIWAWDVESKDILWTSGA 211
                 45666666667777666666666665555 PP

>> Frtz  WD repeat-containing and planar cell polarity effector protein Fritz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.6e-05     0.074     261     349 ..      32     122 ..      23     137 .. 0.83
   2 ?   -1.3   0.0      0.46   5.1e+02     240     291 ..     152     203 ..     120     210 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.6e-05
        Frtz 261 qvislafnpdedkLllGceDssviLydee.rkitklvkaevvP.sliswhpdsaillvasergelqifDlaLspiriqllsedvePksvld 349
                  + sl+f+p+ + L+ G+ D++v L+d    +i +   a+  P   + +  d+++l+ +s+ g ++i+D         l+ ed +  s + 
  KKY17512.1  32 YIYSLSFSPKGNILVSGSFDEAVYLWDVRsARIMRTLPAHSDPvRGVDFNRDGTLLVSCSSDGLIRIWDTMTGQCLRTLVHEDRRQVSSVR 122
                 588999*********************752567777778888834699*********************9888888889999887666655 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.46
        Frtz 240 iyelvknklqrvavtsiPlraqvislafnpdedkLllGceDssviLydeerk 291
                  y+ + nk    + t    +  + s    +d+  Ll G+eD+s+  +d e k
  KKY17512.1 152 TYQGHSNKSYSLTGTVAAYEPSASSGPSGTDHAFLLSGSEDGSIWAWDVESK 203
                 4777778877777777777777788888889999999*******99997755 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.16   1.8e+02     184     216 ..      27      59 ..      24      63 .. 0.89
   2 ?    9.7   0.0   0.00033      0.37     190     248 ..      75     128 ..      61     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.16
    Ge1_WD40 184 ieehsliveaafspdGtalatasedGevkffqv 216
                 i +h  i + +fsp G  l   s d  v ++ v
  KKY17512.1  27 IGHHNYIYSLSFSPKGNILVSGSFDEAVYLWDV 59 
                 5678899999******************99987 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00033
    Ge1_WD40 190 iveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGkslssllfldnhk 248
                 +    f  dGt l  +s+dG+++ +        + +CL      d +++ss+ f  n +
  KKY17512.1  75 VRGVDFNRDGTLLVSCSSDGLIRIWDT-----MTGQCLRTLVHEDRRQVSSVRFSPNSR 128
                 66677999***************9964.....566788888888999999998877655 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0065       7.3     230     263 ..      31      64 ..      26      74 .. 0.87
   2 ?    3.8   0.0     0.027        30      46      75 ..      75     104 ..      66     113 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0065
      Nbas_N 230 dgvfkmslspdgtllavihfsgklsiwdipslkq 263
                 + ++ +s+sp g +l    f   + +wd+ s + 
  KKY17512.1  31 NYIYSLSFSPKGNILVSGSFDEAVYLWDVRSARI 64 
                 56899************************99876 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.027
      Nbas_N  46 wrrvawshdctllayaestgtvrvfdlvgs 75 
                  r v +  d tll  + s g +r++d +  
  KKY17512.1  75 VRGVDFNRDGTLLVSCSSDGLIRIWDTMTG 104
                 47899999******************9865 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   9.9   0.00017      0.19      45     115 ..     296     369 ..     251     391 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00017
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x RF
         YL1  45 eeensDsdfdsdeedeesdeeedeeegekelerqerkkrkkekkkrkaqkkkskkkkkkqkkkkkkkidp....q 115
                 e++++D d d++++deesdeeed ++ e+  +++e  + ++ + ++++q   ++ +++++ +++ + + +     
  KKY17512.1 296 ENDDDDDDDDESDDDEESDEEEDSSD-EEPNQEPEGPNTQTVPHRSANQTDRPQVENEDEPQDQDQPMLDvtteP 369
                 22223333344444555454444443.333455555555677778887877777777777777666555554321 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0015       1.6     300     344 ..      92     136 ..      58     143 .. 0.82
   2 ?    0.9   0.0      0.15   1.7e+02     303     329 ..     138     164 ..     126     199 .. 0.77
   3 ?   -1.2   0.0      0.68   7.7e+02      39      78 ..     221     264 ..     188     266 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0015
  PALB2_WD40 300 tsGaiavWdlllghctalllpesdesWslvrWsgtdsqllaGqkd 344
                 + G i +Wd + g+c   l+ e  ++ s vr+s  +  ++a   d
  KKY17512.1  92 SDGLIRIWDTMTGQCLRTLVHEDRRQVSSVRFSPNSRYIVAWTLD 136
                 568899999999999999999999999999999888877776655 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.15
  PALB2_WD40 303 aiavWdlllghctalllpesdesWslv 329
                  i +Wd  lg+c      +s++s+sl 
  KKY17512.1 138 RIRLWDYGLGKCVKTYQGHSNKSYSLT 164
                 578999999999999999999999985 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.68
  PALB2_WD40  39 vssvwWevaglke...lcivtaces.avslWksldakqWekvyt 78 
                 v  + W+ +   e   + +++a e+  + lW+ + +k+ +k+++
  KKY17512.1 221 VEVMRWNHDDPDEhgnILMISAGEDrKIRLWRGKVEKDKRKTHS 264
                 55566666554431114467777753799999999999999886 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  10.4    0.0002      0.23     220     277 ..     287     343 ..     231     388 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
       BUD22 220 dglla.....sddededeyneetdeesseesdssdssesasesesessek....kkkkkkkkkkkak 277
                 dg+ +     +dd+d+d++++++dees+ee+dssd++   +++++ ++++    +        ++ +
  KKY17512.1 287 DGVNGlkdteNDDDDDDDDESDDDEESDEEEDSSDEEP--NQEPEGPNTQtvphR--------SANQ 343
                 44433444432222222111222222222222222221..122222222212210........1111 PP

>> CPSF100_C  Cleavage and polyadenylation factor 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.7   4.1e+03     124     136 ..      76      89 ..      45     106 .. 0.70
   2 ?    9.0   2.8    0.0013       1.4      36      93 ..     302     369 ..     243     380 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.7
   CPSF100_C 124 k.AEFrgeGtLvid 136
                 + ++F+ +GtL++ 
  KKY17512.1  76 RgVDFNRDGTLLVS 89 
                 35799999999986 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0013
   CPSF100_C  36 eaeeeekeeeeeeeeeeeeeeeaskkqkl..............aeksekeaseeeseekkeslptldvlpan 93 
                 ++++e+++ ee++eee++++ee++    +              a++++ ++ e+e+e +++ +p+ldv+ + 
  KKY17512.1 302 DDDDESDDDEESDEEEDSSDEEPN----QepegpntqtvphrsANQTDRPQVENEDEPQDQDQPMLDVTTEP 369
                 222222222222222222222222....12234666778888777777788888888888889999988765 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  14.1   0.00044      0.49     349     434 ..     294     354 ..     245     387 .. 0.47

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00044
       Nop14 349 eededdfeedddlveseseeeeeeeeedeeeeedeeeeeeeeededdlsdleseeeeeedeleeelleeekkaaeekkekkkkkkk 434
                 + ++dd+++ddd++++++e++e ee++++                        ee ++e e  +++++ +++a+++++ + +++ +
  KKY17512.1 294 DTENDDDDDDDDESDDDEESDE-EEDSSD------------------------EEPNQEPEGPNTQTVPHRSANQTDRPQVENEDE 354
                 2222222112211111111111.111111........................122222222222222222222211111111111 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  18.4    0.0023       2.6      63     150 ..     276     359 ..     252     391 .. 0.50

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0023
        SDA1  63 eeevaegieGleLlekwkeeekkekreeeeedsddeddeedwevesddds.eedsegg.widvesdeeeieesdesedeeeeeeeeeeke 150
                 ee+ + g++G++ ++  k++e+++++  +++d++d+d+e+d+e++s+d++ +++ eg    +v + ++  ++ d+ + e+e+e +++  +
  KKY17512.1 276 EETIVGGLTGIDGVNGLKDTENDDDD--DDDDESDDDEESDEEEDSSDEEpNQEPEGPnTQTVPHRSA--NQTDRPQVENEDEPQDQ--D 359
                 55555566666666666666666655..4444444444444444444444433333332556666555..33333333332222222..2 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   8.8    0.0038       4.3     215     264 ..     297     329 ..     259     383 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0038
        RRN3 215 veledlddeedeeleeeleededdedddeddeesdlddlssdeeaeedee 264
                 ++                  d+dd+d+++ddeesd +++ssdee +++ e
  KKY17512.1 297 NDD-----------------DDDDDDESDDDEESDEEEDSSDEEPNQEPE 329
                 111.................111222222222233333333333333222 PP

>> Lin-8  Ras-mediated vulval-induction antagonist
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   8.5    0.0053         6     151     237 ..     294     375 ..     252     392 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0053
       Lin-8 151 eaeegedteeeekveveeeaeeqgsmdlketeaeevkeeqmeqsfeeeeeakleeptvniveeeaaaravdqsfgsaeqqlessssr 237
                 ++e+++d +++++ + +ee+ e+++ +  ++e ++++e +++q++ ++  +++++p+   ve+e + +++dq++ + + + e+ + +
  KKY17512.1 294 DTENDDDDDDDDESDDDEESDEEEDSS--DEEPNQEPEGPNTQTVPHRSANQTDRPQ---VENEDEPQDQDQPMLDVTTEPEPGPEP 375
                 333333333333322222222222222..4444455555555555533333333333...333333333333333333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       958  (0.053433); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                       145  (0.00808746); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.52
# Mc/sec: 2276.28
//
Query:       KKY17513.1  [L=503]
Description: putative polyadenylation factor subunit 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-28   97.7  21.1    4.5e-06   27.3   3.9    6.3  6  WD40         WD domain, G-beta repeat
    2.2e-09   37.5   0.1       0.67   10.3   0.0    4.5  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00025       2.2      11      37 ..       7      33 ..       3      34 .. 0.89
   2 !   20.5   0.0     7e-08   0.00063       2      38 .]      38      75 ..      37      75 .. 0.93
   3 !   27.3   3.9     5e-10   4.5e-06       2      38 .]      80     117 ..      79     117 .. 0.93
   4 !    7.8   0.0   0.00072       6.5       1      38 []     121     160 ..     121     160 .. 0.76
   5 !   18.4   0.3   3.3e-07     0.003       5      34 ..     168     199 ..     165     202 .. 0.85
   6 !   21.1   1.8   4.6e-08   0.00041       8      38 .]     242     273 ..     236     273 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00025
                SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40 11 ssvtslafspdgawlasGsdDgtvriW 37
                ss+++  +s ++ wl+s++d g v+ W
  KKY17513.1  7 SSIRAAEWSYSKEWLLSADDEGVVKYW 33
                6799999******************99 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 7e-08
                EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38
                ++++tl +H  +v++laf p+ + ++++sdD t++i+d
  KKY17513.1 38 NNVQTLQAHsMPVRDLAFAPSDRKFVTASDDATLKIFD 75
                6899*****666************************98 PP

  == domain 3  score: 27.3 bits;  conditional E-value: 5e-10
                 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 +c  tl+GH++   s++++p++ +++sGs+D++v++Wd
  KKY17513.1  80 NCDLTLSGHNWdAKSVDWHPSKGLIVSGSKDHSVKLWD 117
                 68889****6679************************9 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.00072
                 TEEEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                 g++l+tl GH +  t+  fs+  +  la++ +D+  ri+d
  KKY17513.1 121 GRNLTTLHGHkNALTATVFSRLRDQlLATAARDNLARIFD 160
                 57899*****7777766666666662578899*****998 PP

  == domain 5  score: 18.4 bits;  conditional E-value: 3.3e-07
                 EEEESS.SSEEEEEEETTSSEE.EEEETTSEE CS
        WD40   5 rtltGH.ssvtslafspdgawl.asGsdDgtv 34 
                  +l+GH +++t++a++p ++ l a+G+dDg +
  KKY17513.1 168 CVLRGHeKGITAIAWHPIHSSLiATGGDDGAL 199
                 5799**********999999973699***977 PP

  == domain 6  score: 21.1 bits;  conditional E-value: 4.6e-08
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +H ss++sl+++p g+ lasGs D+  r+W+
  KKY17513.1 242 YAHeSSIWSLDWHPLGHILASGSNDHFTRFWS 273
                 48*999*************************5 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   7.5e-05      0.67       3      72 ..      14      81 ..      12      90 .. 0.82
   2 !    6.6   0.0    0.0011       9.5      39      81 ..      90     132 ..      82     141 .. 0.84
   3 !    7.5   0.1   0.00055         5       2      90 ..      96     183 ..      95     185 .. 0.73
   4 !    4.9   0.0    0.0035        32      22      62 ..     151     199 ..     143     206 .. 0.56
   5 !    9.7   0.0   0.00012         1      36      63 ..     243     270 ..     232     281 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7.5e-05
  ANAPC4_WD40  3 wcptmDLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkv 72
                 w+ +++ +  a ++g +     n ++v tl  ++++  vr+La+ p+++ ++ a +d +++++d  ++++
   KKY17513.1 14 WSYSKEWLLSADDEGVVKYWQPNLNNVQTL--QAHSMPVRDLAFAPSDRKFVTASDDATLKIFDFTTTNC 81
                 555566666666667777777788899999..8999****************************988765 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0011
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                     +s+ W+p+  l++ + +d +v+l d   g+ + +l+ +++
   KKY17513.1  90 WDAKSVDWHPSKGLIVSGSKDHSVKLWDPRVGRNLTTLHGHKN 132
                  567899**********************999988888776655 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.00055
  ANAPC4_WD40   2 swcptmDLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                   w p++ Li  +++d ++ +      r  t+ + +++     +  +  ++lLa a  d+  r++d    + v  l+ +++  +t + W 
   KKY17513.1  96 DWHPSKGLIVSGSKDHSVKLWDPRVGRNLTTLHGHKNALTATVFSRLRDQLLATAARDNLARIFDLRMMRDVCVLRGHEK-GITAIAWH 183
                  58888888888888888888765544444443444444444555578999999999999999999999999999988888.59999995 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.0035
  ANAPC4_WD40  22 fRlngqrvwtl.......eedkedsevrsLaWkp.dgklLavaysdgev 62 
                   R n  r+++l          ++++ ++++aW+p   +l+a + +dg++
   KKY17513.1 151 ARDNLARIFDLrmmrdvcVLRGHEKGITAIAWHPiHSSLIATGGDDGAL 199
                  3444444444444444443456677777778877334566667777765 PP

  == domain 5  score: 9.7 bits;  conditional E-value: 0.00012
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevr 63 
                  +++s++ sL W+p g++La + +d   r
   KKY17513.1 243 AHESSIWSLDWHPLGHILASGSNDHFTR 270
                  57899****************9986555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3244.87
//
Query:       KKY17514.1  [L=353]
Description: hypothetical protein UCRPC4_g05487 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-33  115.8   0.0    1.7e-33  115.4   0.0    1.2  1  NT-C2     N-terminal C2 in EEIG1 and EHBP1 proteins


Domain annotation for each model (and alignments):
>> NT-C2  N-terminal C2 in EEIG1 and EHBP1 proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.4   0.0   9.7e-38   1.7e-33       1     146 []      17     164 ..      17     164 .. 0.94

  Alignments for each domain:
  == domain 1  score: 115.4 bits;  conditional E-value: 9.7e-38
       NT-C2   1 kkkrpkflldlkihelsnipqssgelyvkwrrkdskgtsssgttekakvqngraewneelkipvtlflnkkgkkfeeKllelsvysvlskskkk..kel 97 
                 k+++pkf+l+l+i +l+n+p++ g+  vkw +++s++ +++g t ka +++++a w+++ + +v+l ++ +g+ +++ +++++v +++  s ++   +l
  KKY17514.1  17 KNRKPKFDLTLRIIALNNVPLVAGTSCVKWYIPSSPSAEHRGRTDKAVIKEHKATWDYQKTTQVRLTIDRNGN-LQDTEIHFDVLQEY--SAHSrgIQL 112
                 689*********************************999*****************************76666.*************6..555548*** PP

       NT-C2  98 Gkvelnlaeyvned....eepttsrfllkkskkvnsilslsiqlkllrgdydd 146
                 G v+lnlaeyvn+d       +t+r+l+++s k ns+l + i++k+l gd+++
  KKY17514.1 113 GFVKLNLAEYVNKDddedGLGITRRYLMQQS-KINSTLRVGISMKQLDGDKNF 164
                 *************998888899*********.******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2374.34
//
Query:       KKY17515.1  [L=84]
Description: putative splicing factor 3b subunit 10 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-34  117.6   0.0    2.1e-34  117.5   0.0    1.0  1  SF3b10    Splicing factor 3B subunit 10 (SF3b10)


Domain annotation for each model (and alignments):
>> SF3b10  Splicing factor 3B subunit 10 (SF3b10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.5   0.0   1.2e-38   2.1e-34       1      78 []       3      80 ..       3      80 .. 0.99

  Alignments for each domain:
  == domain 1  score: 117.5 bits;  conditional E-value: 1.2e-38
                XXXXXXXXXXXXXXXXXXXXXXXX--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHT--HHHHHHHHHHCTSSTT---- CS
      SF3b10  1 DklreqqqlehlkskYvGtGhadttkeEWltnihRDtyaSlvgHsalleYfaiaeneskarvrlellekmlqpcgppp 78
                Dklr+ qqlehl++k+vGtGhadtt++EW++ni RD+yaS++gH++ll+Y+a++++e+k+ vr +++e m++ +g pp
  KKY17515.1  3 DKLRTLQQLEHLQAKFVGTGHADTTRHEWTNNIIRDSYASYIGHPQLLSYMALGMGENKEVVRAKMIEAMVKGAGSPP 80
                9**************************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 601.90
//
Query:       KKY17516.1  [L=730]
Description: putative reticulocyte-binding protein 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-59  201.3   0.0    1.3e-59  201.3   0.0    1.9  2  DUF3074       Protein of unknown function (DUF3074)
     0.0066   15.9   0.0      0.068   12.6   0.0    2.2  2  START         START domain
  ------ inclusion threshold ------
       0.17   12.0   1.7       0.22   11.6   0.0    2.1  2  Acyltransf_C  Acyltransferase C-terminus


Domain annotation for each model (and alignments):
>> DUF3074  Protein of unknown function (DUF3074)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.3   0.0   2.2e-63   1.3e-59       1     184 []     122     376 ..     122     376 .. 0.96
   2 ?   -2.8   1.5      0.91   5.5e+03      29      40 ..     574     584 ..     513     634 .. 0.60

  Alignments for each domain:
  == domain 1  score: 201.3 bits;  conditional E-value: 2.2e-63
     DUF3074   1 WfaRrSvheseggasfeefkkgLkkehaesekey.......vrsigaerrveewvevkgsgklevvelsakfpgpltpRdFvvllltasseaeeeesea 92 
                 WfaRrSvhe   g+sf ++kk++++e+ es+++        +r+ig e+rvee ++++g+g+lev++lsa+fpgp+tpRdF++ll+t+s++ +++++++
  KKY17516.1 122 WFARRSVHE---GLSFGRWKKAFEQEFPESLAAGdkpgegnIRGIGGEKRVEE-KHIEGKGNLEVYQLSAQFPGPTTPRDFITLLVTSSNALKDSGKDR 216
                 ********7...9********************66677777************.89************************************9988665 PP

     DUF3074  93 sekerefvvvslpidehpeaaerkglvrgqYeSvErirelpk......................................................... 134
                    +r+++++s+p+  h e+++r++++rgqYeSvE+ire+p+                                                         
  KKY17516.1 217 L-GPRHYMIISKPC-IHDECPPRNNYIRGQYESVEFIREIPRqkrslssssneinekdmlrssdrksqtfplhhenhssdeiakhrhghlvpegseepq 313
                 4.799*********.99************************9********************************************************* PP

     DUF3074 135 .............eseesdeeenkveWimatrSdagGsiPrflqekgtpgsiakDvekfldwa 184
                               s e+++e+n+veWim+trSd+gGs+Prf++e+gtp si+ D+ kfldwa
  KKY17516.1 314 attrsrsktvnapPSAEDESESNPVEWIMITRSDPGGSVPRFMVERGTPASICGDAVKFLDWA 376
                 *************6777899******************************************6 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.91
     DUF3074  29 esekeyvrsiga 40 
                 +  k+ v +i a
  KKY17516.1 574 R-HKKEVAKIEA 584
                 1.1112222222 PP

>> START  START domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   1.1e-05     0.068      87     149 ..     173     244 ..     169     251 .. 0.91
   2 ?    0.2   0.0     0.069   4.1e+02     159     182 ..     332     355 ..     328     366 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.1e-05
                 EECTTEEEEEEEE--TT..-SS-EEEEEEEEEEE...........TTS-EEEEEEEEE-TTS--.-TTSEE-E CS
       START  87 vissggalqlyvaelvalsplspRdfvflRsire..........lgdgsyvivdrSvtseqnppesssvvRae 149
                 +i+  g l++y+ + ++++p+ pRdf +l  + +          lg   y+i +   +++ +pp   +++R++
  KKY17516.1 173 HIEGKGNLEVYQLSAQFPGPTTPRDFITLLVTSSnalkdsgkdrLGPRHYMIISKPCIHDECPP-RNNYIRGQ 244
                 7888899********************99988888999999999999999**************.899*9985 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.069
                 EECTCEEEEEEEEXEEXXSSXXHH CS
       START 159 plgnghskvtwvehvdlkgwlpkw 182
                 +++ ++ +++++ + d++g++p+ 
  KKY17516.1 332 ESESNPVEWIMITRSDPGGSVPRF 355
                 56667789**************64 PP

>> Acyltransf_C  Acyltransferase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.8e-05      0.22      20      39 ..      17      36 ..      15      38 .. 0.93
   2 ?   -5.1   1.6         3   1.8e+04      40      52 ..     586     598 ..     584     615 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.8e-05
  Acyltransf_C 20 eevPedeeelaeWlhelfee 39
                  +++P++e++la+Wl +lfe+
    KKY17516.1 17 SDIPTSEDGLAQWLTDLFEK 36
                  79****************85 PP

  == domain 2  score: -5.1 bits;  conditional E-value: 3
  Acyltransf_C  40 KDklleeFyktgt 52 
                   K+k  +++ ++++
    KKY17516.1 586 KEKETKKYEQRKK 598
                   5666666665333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3256  (0.181605); expected 358.6 (0.02)
Passed bias filter:                      723  (0.0403257); expected 358.6 (0.02)
Passed Vit filter:                       232  (0.0129399); expected 17.9 (0.001)
Passed Fwd filter:                        54  (0.00301188); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.35u 0.39s 00:00:01.74 Elapsed: 00:00:00.58
# Mc/sec: 3770.63
//
Query:       KKY17517.1  [L=803]
Description: putative fungal specific transcription factor domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-11   43.8   0.3    2.7e-11   43.0   0.3    1.4  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.3   1.5e-15   2.7e-11      36     192 ..     216     365 ..     200     462 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 1.5e-15
  Fungal_trans  36 spllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektssd.ralherhhgvavrlarslgLhr 131
                    ++l++ail  Ga +++++  +s++   +++   ++f ++ e++++   +  ++++++lq+L+++ +  +++++  ++h  +++ a+rla  +gLhr
    KKY17517.1 216 LQALVFAILFSGAVSMQEDVCISTFGVPNKA-LVVKFQQATEMFLSKANFLRTTRVETLQALVIY-IIPMCRGElSRAHSALFSAAMRLAECMGLHR 310
                   57899********************999998.9999*********88888888889999988887.455666666888999**************** PP

  Fungal_trans 132 npsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddl 192
                   +p  +g      l++ +   rr lw+   +lD +++  +G  pl++ ++ ++++P + +++
    KKY17517.1 311 DPTLYG------LSPVDVHVRRLLWYQLCVLDFRTCEAYGPRPLIRSDEYDTAFPLNVNEV 365
                   ******......99999**************************************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.52
# Mc/sec: 4623.35
//
Query:       KKY17518.1  [L=501]
Description: putative fk506-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-32  112.4   4.6    1.4e-32  112.4   4.6    2.3  2  NPL          Nucleoplasmin-like domain
    1.3e-30  105.5   0.0    4.1e-30  104.0   0.0    1.9  2  FKBP_C       FKBP-type peptidyl-prolyl cis-trans isomerase
  ------ inclusion threshold ------
        1.5    8.6   8.7       0.11   12.3   0.6    2.1  2  AAA_11       AAA domain
        5.8    5.4  70.4       0.11   11.0  31.6    2.2  2  TFIIF_alpha  Transcription initiation factor IIF, alpha subun


Domain annotation for each model (and alignments):
>> NPL  Nucleoplasmin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   4.6     3e-36   1.4e-32       1     105 []       9     220 ..       9     220 .. 0.82
   2 ?   -6.6   4.9         4   1.8e+04      39      39 ..     335     335 ..     250     394 .. 0.63

  Alignments for each domain:
  == domain 1  score: 112.4 bits;  conditional E-value: 3e-36
                 EEEEEE-STTEEEE-...TTSSEEEEEEEE-TT.................................................................. CS
         NPL   1 fyGlevppgkpvtla...vpadlritmaaldpsa................................................................. 31 
                 +y+l+vppg+ +++a   + a +r++maa+dpsa                                                                 
  KKY17518.1   9 VYALKVPPGEILIPAvpdFAAMFRVSMAAIDPSAapdfddvedttrpkatlkivrfpddlidesdseddyawsdeddeeddgessdeeenggpsdkskr 107
                 7*********777662225566***************************************************99999999999999999999998888 PP

                 ..........................................-BT-EEEEEEEEGGGT................................EEEEEEEEE CS
         NPL  32 .......................................ekekekgrvtlkvkvekkkekeke......................eeeeleefvlctLd 69 
                                                        +                                             e+ e+ee+v+ctLd
  KKY17518.1 108 pskkdimkalakaeamededdeadseseddeaaarailsK----------------------IkkgkakstgsededsdedddddESIEVEEIVVCTLD 184
                 8888888888877777777777777766666666665542......................03333333333444444444555************** PP

                 BTTBSEE---EEEESS-EEEEEEES---EEEEEEEE CS
         NPL  70 peknyqqpldltfsegeevffkvtGthtVhLtGnyv 105
                 pek+yqqpld++++e+e++ffkvtGthtVhLtGnyv
  KKY17518.1 185 PEKHYQQPLDIVVGERERIFFKVTGTHTVHLTGNYV 220
                 ***********************************7 PP

  == domain 2  score: -6.6 bits;  conditional E-value: 4
                 E CS
         NPL  39 r 39 
                  
  KKY17518.1 335 G 335
                 0 PP

>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         2   9.1e+03      32      42 ..     190     200 ..     172     228 .. 0.63
   2 !  104.0   0.0     9e-34   4.1e-30       3      94 .]     410     498 ..     408     498 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2
                 TSEEEEETTSS CS
      FKBP_C  32 akplefkvGsg 42 
                 ++pl ++vG++
  KKY17518.1 190 QQPLDIVVGER 200
                 34444444443 PP

  == domain 2  score: 104.0 bits;  conditional E-value: 9e-34
                 CBB-TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEEE CS
      FKBP_C   3 eeakegdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveLl 94 
                   ak+g++V + y gkle+gkvfds+ +++kp++fk+G+g+vikG++ ++ g+ vG++r++tip +l+Yg++g+ ++ ippn++L+F+v++l
  KKY17518.1 410 A-AKKGNKVGMRYIGKLENGKVFDSN-KKGKPFQFKLGAGEVIKGWDIGIAGLAVGGERRITIPAHLGYGSRGA-PPDIPPNSKLIFDVKML 498
                 5.9***********************.***********************************************.889***********985 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6   2.4e-05      0.11     126     204 ..     110     184 ..      34     190 .. 0.69
   2 ?    0.3   2.1      0.11     5e+02     121     150 ..     317     367 ..     256     401 .. 0.44

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.4e-05
      AAA_11 126 akeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelskeleeaeesleeevldeaeivltTls 204
                 +k+i k+l+k +++ ++++    ++ ++ ++++ ++++  ++ k  k++++ s++ +++e+   +e ++  eiv++Tl 
  KKY17518.1 110 KKDIMKALAKAEAMEDEDD----EADSESEDDEAAARAILSKIKKGKAKSTGSEDEDSDEDDDDDESIEVEEIVVCTLD 184
                 2333333333333333222....24456666777777778888888889999999999999999*************95 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.11
      AAA_11 121 e...kaqlakeiskeleklakelrafeeeeek......................e 150
                     k q++k +++++++ ++ +++ +    k                       
  KKY17518.1 317 GklsKSQQKKLKKQKTNDGEAVTSEAA----KpaangekkvqfaknleqgptpsP 367
                 222211121222222222222222222....122223333444433333444330 PP

>> TFIIF_alpha  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0  31.6   2.5e-05      0.11     265     364 ..      66     172 ..      56     199 .. 0.70
   2 ?    0.2  30.7      0.05   2.2e+02     263     439 ..     233     378 ..     220     419 .. 0.47

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.5e-05
                  XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXX..XXX CS
  TFIIF_alpha 265 dddadeydsddGddegrEldyisDdsasendpe....eredkkseEeeekkeieqdedeeekeeekkeeegklskkkkkakk...lkkkkkekdkkdS 355
                  dd  de ds+d   +  E d  +D ++s+++++    ++ + +s+ ++ k   + +  e+e++e ++e+e+++   +  + k    k k  +++++dS
   KKY17518.1  66 DDLIDESDSEDDYAWSDEDDEEDDGESSDEEENggpsDKSKRPSKKDIMKALAKAEAMEDEDDEADSESEDDEAAARAILSKikkGKAKSTGSEDEDS 163
                  45567788999999999999999999988887788889999999999999999998888888888888888888776555540004444444444444 PP

                  XXXXXXXXX CS
  TFIIF_alpha 356 ddeedsdds 364
                  d+++d+d+s
   KKY17518.1 164 DEDDDDDES 172
                  333222222 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.05
                  XXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXX CS
  TFIIF_alpha 263 gsdddadeydsddGddegrEldyisDdsasendpe...eredkkseEeeekkeieqded.eeekeeekkeeegklskkkkkakklkkkkkekdkkdSd 356
                  ++d+d+d+yd + G+de  El   +D++++e d        ++ s+ ee++k ++   + ++++  +++ee+ +l     ka +  +k +++++k+ +
   KKY17518.1 233 DDDEDEDDYDLSPGEDELDELE--DDEESDELDDVddpRVMEVDSDKEEAPKLVKSGSKgKNKRPADDSEEDANLDDLIAKAGEGNGKLSKSQQKKLK 328
                  4555666666666666544432..22222221111122223333333333333333222023334445555555555555555555555555555555 PP

                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXX...XXXXXXXXXX CS
  TFIIF_alpha 357 deedsddsDideedsvslvkakKkkekkkeekvdsnessagnsrparpspeqkdskskrkaaseeskspvsvpaKklktenap 439
                  +++++d + + +e++ ++   +Kk + +k+ + +  +s a                                  K  k + + 
   KKY17518.1 329 KQKTNDGEAVTSEAAKPAANGEKKVQFAKNLEQGPTPSPA---------------------------------PKETKKDDKK 378
                  5555555555555555555555544444433333333322.................................1222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1439  (0.080261); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        45  (0.0025099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.02u 0.36s 00:00:01.38 Elapsed: 00:00:00.54
# Mc/sec: 2779.47
//
Query:       KKY17519.1  [L=497]
Description: putative proline iminopeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-10   38.9   0.0    1.6e-09   37.8   0.0    1.5  1  Abhydrolase_1  alpha/beta hydrolase fold
      3e-06   26.7   0.0    5.2e-06   25.9   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
    0.00018   22.2   0.0    0.00046   20.8   0.0    1.8  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
       0.04   13.5   0.0      0.064   12.8   0.0    1.3  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
       0.16   11.4   0.0       0.82    9.1   0.0    1.9  2  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   4.5e-13   1.6e-09       1     137 [.      79     243 ..      79     250 .. 0.82

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 4.5e-13
                    SEEEEE-STTT......CGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB...............CHHSHHHHHHHHHHHHHHCTTS... CS
  Abhydrolase_1   1 pvlvilhGlpg......ssdvwaerglapaLakdgfdvillDlrGvgySspapacin..............ddygtasvaddldrildalgdd... 73 
                    p+++ l G+pg      ss+ w+       L ++g++v+llD+rG g S+p   + +              + ++ ++  +d ++i+  l +d   
     KKY17519.1  79 PWICWLEGGPGygsgvpSSYPWIS-----FLLDRGYQVLLLDQRGMGLSTPVTVE-TialrgdsaaqaeylKFFRQDHCVKDCEAIRKCLTQDwdv 168
                    6788899****9776666666666.....66777***************999875.2488888888866665569999***********9875555 PP

                    .....SEEEEEETHHHHHHHHHHHHHGGGEEEEEEESE......CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHH CS
  Abhydrolase_1  74 .....kltlvGhSmGGmialayaaeyperVkalvllga......idpaaslieaqrqqaksfpdffdgyaadcar 137
                         k+ ++G+S+GG+++l y++ +pe  +    +g+      ++p   + ++  ++ k+ + + +++ +d  r
     KKY17519.1 169 peeqrKWSIIGQSYGGFVSLSYLSFAPEGLRESFITGGlapisqSNPDEIYQRCFARSKKRNQAYYNKFPQDSVR 243
                    55553555******************************9988888888888888888888888888888888766 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.4e-09   5.2e-06      25     106 ..     102     203 ..      89     251 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.4e-09
  Hydrolase_4  25 eaLaaqGfavyalDhrGhGrse................gkrghvpsfddyvdDlaafvekvkeehpel....plfllGhSmGGliallyllrypdkva 102
                    L ++G++v+ lD+rG G s                  +  ++ + d++v+D++a+ + + +++       +  ++G+S GG+++l+yl   p+ ++
   KKY17519.1 102 SFLLDRGYQVLLLDQRGMGLSTpvtvetialrgdsaaqAEYLKFFRQDHCVKDCEAIRKCLTQDWDVPeeqrKWSIIGQSYGGFVSLSYLSFAPEGLR 199
                  56899***************************99998878888889999*****999766666553323345******************98888777 PP

  Hydrolase_4 103 glil 106
                     +
   KKY17519.1 200 ESFI 203
                  4444 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.3e-07   0.00046       6      95 ..      89     205 ..      86     450 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.3e-07
                    -GC........GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHH..C....HHHHHHHCCTT......................TTSE...EE CS
  Abhydrolase_6   6 Gagss...assWlvapLaallaagvhvlapDlpGhGrsdpppldled..l....adlaalldelaa....................gggpv...vl 69 
                    G gs+   ++ W    +  ll +g++vl +D +G+G   + p ++e   l    a++a++l  +++                       +     +
     KKY17519.1  89 GYGSGvpsSYPW----ISFLLDRGYQVLLLDQRGMG--LSTPVTVETiaLrgdsAAQAEYLKFFRQdhcvkdceairkcltqdwdvP-EEQrkwSI 177
                    555556234444....34478899999*********..4455444442212222222333333333444555555555666688852.444479** PP

                    EEETCHHHHHHHHHHCC.....EEEEES- CS
  Abhydrolase_6  70 vGHSlGGalalaaapla...lvvgvlldp 95 
                    +G S+GG+++l +++ a   l +  ++ +
     KKY17519.1 178 IGQSYGGFVSLSYLSFApegL-RESFITG 205
                    ***********9666666642.2233333 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.8e-05     0.064      52     127 ..      53     199 ..       3     219 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.8e-05
                    H..................................................HHHTT-EEEEEE-TTSTTS-S---TT..TTTHHHHHHHHHHHHHH CS
  Peptidase_S15  52 v..................................................fvarGYavVvqdvrGtggSeGeftvg..dsdeaedgadvidWlak 95 
                    +                                                  +++rGY v++ d rG g S+ +++ +   + + ++ a+ ++  ++
     KKY17519.1  53 FargvrkadtsivpstaedakkksqlpwicwleggpgygsgvpssypwisfLLDRGYQVLLLDQRGMGLSTPVTVETiaLRGDSAAQAEYLKFFRQ 148
                    0555555555555555555556667777788888888888888888888889*******************9987767788888999999999999 PP

                    ...................CTTEEEEEEEEEECHHHHHHHHHCTT--TTEE CS
  Peptidase_S15  96 ...................qpwsnGkVgmtGiSYlGttqllaaatgvpalk 127
                                        p+ + k   +G SY+G+++l  ++ ++++l+
     KKY17519.1 149 dhcvkdceairkcltqdwdVPEEQRKWSIIGQSYGGFVSLSYLSFAPEGLR 199
                    99999999999999999955999******************9999999987 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.24   8.6e+02       6      26 ..     101     120 ..      96     124 .. 0.80
   2 ?    9.1   0.0   0.00023      0.82      41      87 ..     148     196 ..     125     199 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.24
                   HHHHHHCCT-EEEEE--TTSS CS
  Peptidase_S9   6 elqlladrGyvvvvanirGsg 26 
                     ++l drGy v+  + rG g
    KKY17519.1 101 I-SFLLDRGYQVLLLDQRGMG 120
                   3.4555************965 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00023
                   GHHHHHHHHHHHHHHHHTT.S-.-GGGEEEEEETHHHHHHHHHHHH-GG CS
  Peptidase_S9  41 gqnefdDfiaaaealakeg.yv.dserlaitGgSyGGyltgaalnqrpd 87 
                    +++++D+ a+ + l++   +  ++++  i G SyGG++++  l  +p+
    KKY17519.1 148 QDHCVKDCEAIRKCLTQDWdVPeEQRKWSIIGQSYGGFVSLSYLSFAPE 196
                   67899999999999988875431566799***********999887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.51
# Mc/sec: 2909.49
//
Query:       KKY17520.1  [L=482]
Description: putative tyrosine [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-17   62.9   0.0    5.3e-08   32.0   0.0    2.8  2  Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved do
  ------ inclusion threshold ------
      0.029   13.1   0.0       0.09   11.4   0.0    1.7  2  SepSecS        O-phosphoseryl-tRNA(Sec) selenium transferase,


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   2.1e-10   1.9e-06      39     238 ..      31     247 ..      16     252 .. 0.76
   2 !   32.0   0.0   5.9e-12   5.3e-08     253     352 ..     289     396 ..     283     418 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 2.1e-10
                    STTBHCSSH....HHHHHHHHHHHHHT-BT.SSTTTSHHHHHHHHHHHHHHHHHTT--GGGTCCT-EEEEESSHHHHHHHHHHHHHHHHHHHHHHH CS
  Pyridoxal_deC  39 spefhkllpagnslisllgdlLadainkng.ftweesPaltelevvvldwlaellglpeeflekegggvlqvgssestllallAartkvikemkek 133
                    +p+ + ++  g    +l++d+L++   +n+ +   e    t++e   l+ + ++l l ++        ++++g++ s++l+l   r+  ++ + + 
     KKY17520.1  31 NPRYYGFVTGGVTPAALAADFLTSIYDQNVsVHLSEESIATKIEYEALNLVLDMLRLERNVF---PSKIFTTGATASNILGLALGREWLVQTYGKL 123
                    5777888888888899*******999887548899999*******************94443...468************9876776666666544 PP

                    T.....T.....TS.HHHHHCCE..EEEEETTS-HHHHHHHHHHT-E....EEEE--BTTTBB-HHHHHHHHHHHHCTT.EEEEEE...EEBS-TT CS
  Pyridoxal_deC 134 g.....k.....elkeaeildkl..vlytsdqahssvekaalvlgvk....lrvipldengklrgaalekaieedkekGlipffvv...atlGttv 210
                    +     +      l ea+ ++k   +   s   hss+ kaa v+g++    + +   ++  +l ++ale  i  +     ++++     ++ G   
     KKY17520.1 124 HgvsplPsvgdlGLLEACSQAKIskIEIVSTMPHSSIAKAASVVGLGrssiVDLFDPHDPITLNMDALETYIGTRAPTTATILVLSigeVNTGFFA 219
                    322222111111233444444441123567779*************9766555555666688999********99999888855432226778888 PP

                    T-BB--HHHHHHHHHHCT-EEEEE-TTG CS
  Pyridoxal_deC 211 lgaFddlkelgdicekydlwlHvDAAya 238
                    + + +++++l  +c   ++w+H D A++
     KKY17520.1 220 TSSLEQMQQLRTLCTTNNIWIHADGAFG 247
                    8899**********************97 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 5.9e-12
                    TGGGESEEEEECCCCTS--SS-EEEEESSCCGCHHH.H.-EEECCCT.TT...TTTSEECC...CGSSSSSGHHTHHHHHHHHHHHHHHHHHHHHH CS
  Pyridoxal_deC 253 gieradSitvnphKlllvlldcsalivkdkealqqa.l.qleaeYLehed...sdvaadlg...tkaiplsrrvrilklwfvlralGveglqnqir 340
                    g+e++dSit   hK+l v+ dc+ ++ +    l +  + + +a YL+ +    s  ++ ++   +  ++ srr+r+l ++  l + G++g+ + ++
     KKY17520.1 289 GLELVDSITGDAHKFLNVPYDCGIFFSRHPPSLLESvFqNGNAAYLRASPhntSTTSPPIPsplNIGLENSRRFRALPVYATLLSHGRKGYLEILQ 384
                    9***************************987766541424589***965545566666555222688999*********************99999 PP

                    HHHHHHHHHHHH CS
  Pyridoxal_deC 341 ksvelakylekl 352
                    +++ l +++   
     KKY17520.1 385 RQILLCRKIITY 396
                    888887765544 PP

>> SepSecS  O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     1e-05      0.09      97     196 ..     143     248 ..     134     255 .. 0.82
   2 ?   -1.9   0.0      0.11     1e+03     262     281 ..     368     387 ..     361     402 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1e-05
                 HHCC--CCEEEEEETCHHHHHHHCTT-E.EEEE-EEECTTEEEEHHHHHHHHH.HCCTCCCEEEEEEC....SSTTTTB----HHHHHHHHHCCT--EE CS
     SepSecS  97 krskakkviwvridekSslkavelaGle.ialvekvlegDelitdvedveeii.ekkreevilavlst....lsffaprspDdvkeiakiCaeydvPhl 189
                 + + +k  i   + + S  ka++ +Gl    +v+  +  D +  ++++ e+ i ++    +++ vls     + ffa  s ++++++  +C   ++   
  KKY17520.1 143 QAKISKIEIVSTMPHSSIAKAASVVGLGrSSIVDLFDPHDPITLNMDALETYIgTRAPTTATILVLSIgevnTGFFATSSLEQMQQLRTLCTTNNIWIH 241
                 4556788899999**************62689*********************888777777788875333266788889999*********9999999 PP

                 EEGCCCC CS
     SepSecS 190 vNgAYai 196
                   gA+++
  KKY17520.1 242 ADGAFGL 248
                 9999988 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.11
                 CCCHHHCCHHHCCHHHHHHH CS
     SepSecS 262 lisllllGskaykkllkeqk 281
                   +ll+ G k+y+++l++q 
  KKY17520.1 368 YATLLSHGRKGYLEILQRQI 387
                 5799************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 3190.99
//
Query:       KKY17521.1  [L=166]
Description: hypothetical protein UCRPC4_g05494 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.51
# Mc/sec: 987.91
//
Query:       KKY17522.1  [L=484]
Description: putative kh domain rna binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-42  143.4   3.4    8.1e-18   64.0   0.2    3.3  3  KH_1      KH domain
    3.1e-11   42.9   0.9      0.009   15.8   0.1    3.3  3  KH_2      KH domain
    2.1e-05   24.5   7.3       0.24   11.5   0.2    3.3  3  KH_5      NusA-like KH domain
    8.8e-05   22.3   0.5       0.97    9.4   0.0    3.3  3  KH_4      KH domain
    0.00025   21.0   0.0      0.046   13.7   0.0    2.5  2  MOEP19    KH-like RNA-binding domain


Domain annotation for each model (and alignments):
>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.3   1.1e-12   3.8e-09      11      64 ..     139     191 ..     130     193 .. 0.86
   2 !   42.4   0.0   1.3e-14   4.5e-11       3      63 ..     214     274 ..     212     276 .. 0.91
   3 !   64.0   0.2   2.3e-21   8.1e-18       1      65 [.     411     474 ..     411     475 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.1e-12
                 HHHHHTGGGHHHHHHHHHHT-EEEEES.STT...T.-EEEEEESHHHHHHHHHHH CS
        KH_1  11 vgriIGkgGsnIkeIreetgakIkvpk.sedegsderevtisGspeavekAkeli 64 
                 +   IGkgG+n+ +Ir+ +gak +v + s+     er++t+sG ++av+kA  li
  KKY17522.1 139 AATCIGKGGENVSQIRQLSGAKCTVSDySRG--AVERILTVSGAQDAVAKAFGLI 191
                 5567*************9******9965555..6*****************8887 PP

  == domain 2  score: 42.4 bits;  conditional E-value: 1.3e-14
                 EEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT.....T.-EEEEEESHHHHHHHHHH CS
        KH_1   3 rilvPsslvgriIGkgGsnIkeIreetgakIkvpksedeg..sderevtisGspeavekAkel 63 
                 r+l+P+ l+g+iIGk G +I+eI+e +ga+ +   s+++   s+er +++ G ++av+ A + 
  KKY17522.1 214 RLLIPHILIGSIIGKSGVRIREIQEASGARLN-A-SDSCLplSTERSLVVLGVADAVHIATYY 274
                 89***********************99***99.5.777778******************9876 PP

  == domain 3  score: 64.0 bits;  conditional E-value: 2.3e-21
                 EEEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT....T.-EEEEEESHHHHHHHHHHHH CS
        KH_1   1 tlrilvPsslvgriIGkgGsnIkeIreetgakIkvpksedeg.sderevtisGspeavekAkelie 65 
                 t++i +P+++vg+iIGkgG++I+eIr  +g  Ik+ +  +++ s+er vti+G++e+ + A+++++
  KKY17522.1 411 TQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINE--PQDnSNERLVTITGTQECNQMALYMLY 474
                 689************************9******764..33349******************9986 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.1e-05     0.077      27      57 ..     130     160 ..     122     168 .. 0.87
   2 !   10.9   0.0   8.7e-05      0.31      37      59 ..     223     245 ..     221     271 .. 0.90
   3 !   15.8   0.1   2.5e-06     0.009      32      59 ..     417     444 ..     408     457 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.1e-05
                 EEEEEEESCHHHHHTGGGHHHHHHHHHHHHH CS
        KH_2  27 viiviresqpgivIGkgGsnikkigkelrkd 57 
                 ++ vi +++ +  IGkgG+n+ +i++  + +
  KKY17522.1 130 IRAVISSAEAATCIGKGGENVSQIRQLSGAK 160
                 6789999*******************98876 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 8.7e-05
                 HHHHTGGGHHHHHHHHHHHHHHH CS
        KH_2  37 givIGkgGsnikkigkelrkdie 59 
                 g +IGk G +i++i+++ + ++ 
  KKY17522.1 223 GSIIGKSGVRIREIQEASGARLN 245
                 88***************999884 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 2.5e-06
                 EESCHHHHHTGGGHHHHHHHHHHHHHHH CS
        KH_2  32 resqpgivIGkgGsnikkigkelrkdie 59 
                  +   g +IGkgG++i++i++  +  i+
  KKY17522.1 417 PNDMVGAIIGKGGAKINEIRHLSGSVIK 444
                 556689**************99988774 PP

>> KH_5  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1   0.00058       2.1      18      48 ..     138     167 ..     130     176 .. 0.78
   2 !    6.9   0.5    0.0019       6.7      19      35 ..     222     238 ..     220     243 .. 0.92
   3 !   11.5   0.2   6.6e-05      0.24      17      46 ..     419     447 ..     416     458 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00058
        KH_5  18 pvGaivgkkGsrikavsseLkgekidvvews 48 
                 ++++++gk+G++++++ + L+g k  v ++s
  KKY17522.1 138 EAATCIGKGGENVSQIRQ-LSGAKCTVSDYS 167
                 489************975.668777776666 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0019
        KH_5  19 vGaivgkkGsrikavss 35 
                 +G+i+gk+G ri+++ +
  KKY17522.1 222 IGSIIGKSGVRIREIQE 238
                 8*************976 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 6.6e-05
        KH_5  17 dpvGaivgkkGsrikavsseLkgekidvve 46 
                 d vGai+gk+G++i+++  +L+g  i++ e
  KKY17522.1 419 DMVGAIIGKGGAKINEIR-HLSGSVIKINE 447
                 89**************85.67777777755 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0015       5.3      25      58 ..     122     157 ..     112     168 .. 0.79
   2 ?    2.2   0.0     0.047   1.7e+02      31      55 ..     213     237 ..     200     246 .. 0.76
   3 !    9.4   0.0   0.00027      0.97      33      61 ..     414     442 ..     408     451 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0015
        KH_4  25 eeeeveielnv..egedlGrvIGkrGrtldAlqylv 58 
                 ++e+++i++++  ++ + +  IGk G++++ +++l 
  KKY17522.1 122 QDESQWIHIRAviSSAEAATCIGKGGENVSQIRQLS 157
                 45566666654449999****************996 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.047
        KH_4  31 ielnvegedlGrvIGkrGrtldAlq 55 
                 ++l +    +G +IGk G  ++ +q
  KKY17522.1 213 LRLLIPHILIGSIIGKSGVRIREIQ 237
                 5555666668********8776555 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00027
        KH_4  33 lnvegedlGrvIGkrGrtldAlqylvsaa 61 
                 + +  + +G +IGk G  ++ +++l   +
  KKY17522.1 414 IFIPNDMVGAIIGKGGAKINEIRHLSGSV 442
                 66778889****************97766 PP

>> MOEP19  KH-like RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0099        36      14      43 ..     212     241 ..     205     249 .. 0.86
   2 !   13.7   0.0   1.3e-05     0.046      20      77 ..     417     475 ..     409     483 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0099
      MOEP19  14 PlvfyleawlleaiFGpdgeripeiEqvsq 43 
                 Pl + +   l+ +i G++g ri+ei+  s 
  KKY17522.1 212 PLRLLIPHILIGSIIGKSGVRIREIQEASG 241
                 88889999999**************98875 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.3e-05
      MOEP19  20 eawlleaiFGpdgeripeiEqvsqtllevkalds.eglaeilifGrprykkrvkkmlls 77 
                  ++++ ai G+ g++i ei   s  +++++  +  +++  ++i G ++  + +  ml s
  KKY17522.1 417 PNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDnSNERLVTITGTQECNQMALYMLYS 475
                 6778999***********************9987699999**********999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.51
# Mc/sec: 2861.97
//
Query:       KKY17523.1  [L=703]
Description: putative acylsynthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-78  262.5   0.0    6.9e-78  262.1   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    1.2e-15   57.2   0.3      6e-15   54.9   0.1    2.3  2  ACAS_N         Acetyl-coenzyme A synthetase N-terminus
    1.4e-12   48.4   0.0    3.5e-12   47.1   0.0    1.7  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.1   0.0   1.1e-81   6.9e-78       8     422 ..      80     545 ..      74     546 .. 0.85

  Alignments for each domain:
  == domain 1  score: 262.1 bits;  conditional E-value: 1.1e-81
                  STTSEEEEE....CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE.. CS
  AMP-binding   8 tpdkvalvd....sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli.. 99 
                  + d va+ +    +g+ q+lTYr+l ++v+ lA +Lr+ Gvkkgd+V++++p+ p  ++a+lai+ +Ga+++ +  ++ a+ la+ +e++++++++  
   KKY17523.1  80 HGDNVAICWespvTGQSQKLTYRQLLDEVEVLAGVLREQGVKKGDVVLLYMPMIPAALIAALAIVHLGAIHAAVFGGFAAASLAQRIEAAKPRAIMta 177
                  6799999889999999*********************99**********************************************************9 PP

                  ...........ETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS..........-TSCCCS-BTTSEEEEEEE--SSSS-EE CS
  AMP-binding 100 ...........atvdselleklleaaakleavklvivldadellkeeelkeeeeseekae..........kpeeeeelkpddlayiiYTSGTTGkPKG 176
                             a   + l+e++  ++++  ++  v+v ++d+l+ + +l+++++++++++          k  +++++k++d +yiiYTSGTTG PKG
   KKY17523.1 178 scgiegskgplA--YRSLVEEA--VQKSSFKPGRVMVWQRDQLRWN-PLDQQSGQRDWRQlveqarrdgvKA-DPVPVKSNDGLYIIYTSGTTGLPKG 269
                  999988654431..23333333..3344467788888888888776.6666666776663567889999645.6779********************* PP

                  EEEEHHHHHHHHHHHHHHHCSC.CTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGC.CH.HHHHHHHHHHHT-SEEEEEHHHHHHHHHCC CS
  AMP-binding 177 Vmlshrnlvanvaslkletrfk.lkeddvvlsilplahifglilelllallsGatvvllpkdaa.ld.pklllelieklkvtviagvPrvleallesg 271
                  V+ + +  +  ++  +++  f+  +++dv+++  ++ +++g+++ l+++ll+Gat v++++++  ++ ++ +++++ek+kv++++++P++l+a+ +++
   KKY17523.1 270 VVREAGGHAVGLSL-SIQYLFGiHGPRDVMFCASDIGWVVGHSYILYGPLLVGATTVMYEGKPVgTPdAGEFWRVVEKHKVNTLFTAPTALRAICNQD 366
                  *****666555333.44544664667************************************99977788899*********************9955 PP

                  CHH.C...HHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTC......EEEEEEEEGGGSSEC...EE..............CHCTTTCTSTTS-BEE CS
  AMP-binding 272 alk.a...akkakdlsslrlvllggeplspellrffralfge......evlegYGlTEttgvv...tv..............lpleedkkklgsvGkp 342
                  +++ +   a k+   +slr ++l+ge+ +p+++++f++l++       +v++ ++ +E +  +   +               +  + +  k+gs+Gkp
   KKY17523.1 367 PRNrFfeaAGKRGGVKSLRGLFLAGERSEPSIVDRFQDLLKSyaspgaTVIDNWWSSESGSPIsglALncaaatadlhgratP--PLP-IKPGSAGKP 461
                  55535566666668889999999*****************99*****99**********999966511567889999998533..444.469****** PP

                  -TTEEEEEE-TTTSCBEETTSEEEEEEEET...TS-SEBTT-HHHHHHHEEET.CC.EEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 343 lpgvevkivDeetgepvpdgeeGellvrgp...gvmkgYlkkpeataeafdse.gr.wlrTGDlgrldedGyleivgRkkdlikl 422
                  +pg +v+ivD++ g++  +g+ G +++  p   + +   ++++e+  + + +  ++ wl TGD g +d dGy++++ R++d+i++
   KKY17523.1 462 MPGFDVRIVDDD-GNEADTGTMGNIVMAMPlapTAFTTLFNDDERFYKGYLKRfDGkWLDTGDAGMIDSDGYIHVMSRSDDIINV 545
                  ***********9.99999**********987778***********999988635455**************************97 PP

>> ACAS_N  Acetyl-coenzyme A synthetase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.1     1e-18     6e-15       4      55 .]       9      70 ..       6      70 .. 0.86
   2 ?   -1.0   0.0      0.29   1.7e+03      11      45 ..     336     373 ..     334     375 .. 0.69

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 1e-18
                HHHHHHH-HHHHHHHHHCCS--SB--S-SECST..........TTCT-EESTT-EE-HHHHH CS
      ACAS_N  4 lykeSiedpeaFWaeqakeldWekpfdkvldgs..........kgpfikWFeGGklNicyNc 55
                +++ S+++p++FW+  a++l+W+k +++vl+ +           +++++WF++G+l+++yNc
  KKY17523.1  9 VHDLSLRNPDSFWGFHAEKLHWHKRPSRVLQRTtktlrssggiSHEHWAWFPDGELSTTYNC 70
                6788***********************9997665556666666688**************** PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.29
                 -HHHHHHHHHCC..S--SB--S-SECS.TTTCT-EEST CS
      ACAS_N  11 dpeaFWaeqake..ldWekpfdkvldg.skgpfikWFe 45 
                 d  +FW+ + k+   + ++ ++      +++p  ++Fe
  KKY17523.1 336 DAGEFWRVVEKHkvNTLFTAPTALRAIcNQDPRNRFFE 373
                 56799999998775557888887776414455788776 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   5.9e-16   3.5e-12       2      76 .]     555     642 ..     554     642 .. 0.85

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 5.9e-16
                    HHHHHHSSTTEEEEEEE-----TTS---EEEEEE---...---..........HHHHHHHHHHHHT-TTTS-SEEEE-.S---B-TTS- CS
  AMP-binding_C   2 vEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg...sea..........leeeLkahvrkelgpyavpkkvvfv.delpktrsGK 76 
                    +E+a+++hp + ea VvG+pd +kG+ + af+ ++++   s +          l +++++ vr ++g++a    ++   + +pktrsGK
     KKY17523.1 555 IEQAILQHPSIGEANVVGIPDSLKGHLPFAFIRPHSEsssS-SspipatppslLFDAVNELVRNNIGAIASLGGMIQGqSIIPKTRSGK 642
                    9*********************************7543431.13466677899*****************99977755267*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4799.44
//
Query:       KKY17524.1  [L=1500]
Description: putative nuclear pore complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-06   27.5   0.0    4.1e-06   26.3   0.0    1.6  1  NUP214       Nucleoporin or Nuclear pore complex subunit NUP2
     0.0019   18.1   1.0      0.005   16.7   1.0    1.7  1  Co_AT_N      Cob(I)alamin adenosyltransferase N terminal
      0.007   16.7   0.0       0.27   11.6   0.0    2.4  2  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
        0.6   10.4   8.6       0.11   12.7   0.5    2.6  2  NEXCaM_BD    Regulatory region of Na+/H+ exchanger NHE binds 


Domain annotation for each model (and alignments):
>> NUP214  Nucleoporin or Nuclear pore complex subunit NUP214=Nup159
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   9.2e-10   4.1e-06     193     353 ..     262     437 ..     239     440 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 9.2e-10
                 EEEEEEESSSSEEEEEEES---SS-SS----EEEEEEEEETTE..EEEEEESSS------S-----EEEEE.EETSSSTT-EEEEEEETT-SB-EEE-S CS
      NUP214 193 eplsikvLskqeylvvfGnkvseteedvsyDhklyivkkkdee..vsfqesfDitPafgsvlryPtvynii.lkglieedknvnilasacsseitiwds 288
                 +  si+ L+++ +++++    s+ ++  + D  +yi++++++   ++fq s  +  afg + r P +  i+ l++   + + + ++as+ s+++ i  +
  KKY17524.1 262 HVSSISWLENDIFFMIYSP--SSVDDGSMVDSDFYILSRQKGTtnFTFQRSPPVCSAFG-LDRQPASQMITrLRNFPPHIQYLLVVASTNSTDLGIVTK 357
                 5668999999999999975..566777888999****9988764489999999999999.67999998885378888888999***********99653 PP

                 .......SSEEEE......SSGGGS-B--B-TTTSSB--ECEEEEE-S---------------....----EEEEEETTSEE CS
      NUP214 289 .......kevveP......sqDseravlPisketdnDtnPiGvalDvvtsGviaePCsGvDki....dklpLiyiLnneGkL 353
                        ++vv          Ds+ra lP+  +++ Dt+PiG++lD++ +  + +P  G  +i      lp + +Lnn G L
  KKY17524.1 358 saqalstENVVGEftfttlADDSRRAELPM--VAGLDTSPIGLSLDLSSREKVDNPILGDSEIlqsdTPLPDLLLLNNAGVL 437
                 222222267875322222368********8..5789*********************9987773322347778888998877 PP

>> Co_AT_N  Cob(I)alamin adenosyltransferase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.0   1.1e-06     0.005       4      23 ..    1467    1486 ..    1460    1486 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.1e-06
     Co_AT_N    4 tdeqeRHrqrMQRrKevqDa 23  
                  ++e+eR +q+ +R+Kevq+a
  KKY17524.1 1467 PEEAERWQQKARRKKEVQEA 1486
                  79****************97 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.046   2.1e+02       8      60 ..      86     141 ..      84     166 .. 0.72
   2 !   11.6   0.0     6e-05      0.27      10      89 ..     185     268 ..     180     271 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.046
  ANAPC4_WD40   8 DLiAlatedgellvfRlngqrvwtleedkedsevr...sLaWkpdgklLavaysdg 60 
                  D + la +d   ++fR +g    ++ e++ + +v    ++a++ d+++L+v+  dg
   KKY17524.1  86 DVLVLAGTDAVREAFRAEGSAALKTFEPQLKITVPklsHVAFSADENVLVVSAIDG 141
                  66667777777777888887777775555554443222789**********99998 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 6e-05
  ANAPC4_WD40  10 iAlatedgellvfRlngqrvwtl.eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek....avtclgW 89 
                  +A++t++g+ll+  l+  ++ ++ + +   s v++++W+++gk ++ + +dg+   l+  +g++  +++         +v++++W
   KKY17524.1 185 FAVVTTEGDLLLANLKRGQLESGsNGPVMRSGVSCISWSNKGKQIVAGLADGSAVQLK-PTGEIAAEIPRPPALganmHVSSISW 268
                  6999999999999999988888867788999*********************654333.45566555554444344445555555 PP

>> NEXCaM_BD  Regulatory region of Na+/H+ exchanger NHE binds to calmodulin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5   2.5e-05      0.11      25      90 ..    1254    1319 ..    1246    1332 .. 0.80
   2 ?    0.5   2.1      0.16     7e+02      48      88 ..    1457    1497 ..    1449    1500 .] 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.5e-05
   NEXCaM_BD   25 keeveeirdiLskNlykiRqRtlsYnrhtLvadtsekqakeilirrqkslreslrkgsslsrerka 90  
                  +++v++ r++Lsk +++ R ++ s  +   +++  +  + + l   q+s+++ lrk+s+l +++ a
  KKY17524.1 1254 AGKVQKCRNLLSKDMFQLRSKLISLRKALHAKENPNASVINNLSSEQASIQHDLRKSSTLLQSKLA 1319
                  678999******************977655555555666777899***********8888755544 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.16
   NEXCaM_BD   48 sYnrhtLvadtsekqakeilirrqkslreslrkgsslsrer 88  
                  s n  tL+  ++e +  +   rr+k ++e l++  +  r++
  KKY17524.1 1457 SINEDTLTVSPEEAERWQQKARRKKEVQEALKEALKTRRTK 1497
                  77999********9999999************966555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1107  (0.0617435); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.91u 0.28s 00:00:01.19 Elapsed: 00:00:00.47
# Mc/sec: 9512.00
//
Query:       KKY17525.1  [L=278]
Description: putative proteasome component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-47  160.3   0.1    4.6e-47  160.0   0.1    1.1  1  Proteasome  Proteasome subunit
    1.5e-12   46.7   0.4    1.5e-12   46.7   0.4    1.7  2  Pr_beta_C   Proteasome beta subunits C terminal


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0   0.1   5.1e-51   4.6e-47       2     190 .]      27     207 ..      26     207 .. 0.97

  Alignments for each domain:
  == domain 1  score: 160.0 bits;  conditional E-value: 5.1e-51
                 HHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHCT CS
  Proteasome   2 kkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrsg 100
                 ++Gtt+vG  +++gvv+aad+rat+g ++++k+ +eK++ i+++i++a aG+aaD++  +  ++++++l++l++gr+++v      ++ +++++ + ++
  KKY17525.1  27 STGTTIVGCIFDNGVVIAADTRATSGPIVADKN-CEKLHYISPQIWCAGAGTAADTEFTTALISSNLELHSLSTGRKPRVA-----TCMTMLKQHLFRY 119
                 68***************************7777.***********************************************.....9999999999999 PP

                 TTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEEE CS
  Proteasome 101 rrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievavi 190
                 ++++g+ l++agvd +g  +L+++  +Gs  +  ++v++Gsgs aa++++e  +++++++eeav++  +a+++++ +d  sg+n++v++i
  KKY17525.1 120 QGHIGAYLVVAGVDPTG-VSLFTVHAHGSTDKL-PYVTMGSGSLAAMSMFETMWEPNMNKEEAVKVCSEAIQAGIFNDLGSGSNVDVCII 207
                 ****************9.8**************.6*****************************************************97 PP

>> Pr_beta_C  Proteasome beta subunits C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   1.4       1.3   1.2e+04      16      20 ..      29      33 ..      28      33 .. 0.84
   2 !   46.7   0.4   1.7e-16   1.5e-12       1      35 [.     222     256 ..     222     257 .. 0.96

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 1.3
                TSS-E CS
   Pr_beta_C 16 GTTaV 20
                GTT V
  KKY17525.1 29 GTTIV 33
                9**88 PP

  == domain 2  score: 46.7 bits;  conditional E-value: 1.7e-16
                 TTS-S--SS-----TTSS-EEEEEEE-SSSS---X CS
   Pr_beta_C   1 PNekgeRqgsYkfkrGTTaVLkekVplklevveet 35 
                 PNe+++++++Ykf++GTT +L+e++++k+++ ++ 
  KKY17525.1 222 PNERVKKEKDYKFAKGTTNWLNERIITKEDIGRYI 256
                 9******************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.50
# Mc/sec: 1676.57
//
Query:       KKY17526.1  [L=399]
Description: putative aspartic endopeptidase pep1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-70  238.3   9.5    1.6e-70  238.0   9.5    1.0  1  Asp             Eukaryotic aspartyl protease
    1.4e-05   25.4   7.5    0.00046   20.5   1.8    2.5  3  TAXi_N          Xylanase inhibitor N-terminal
    6.8e-05   23.4   2.0     0.0026   18.4   0.1    2.8  2  Asp_protease_2  Aspartyl protease


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.0   9.5   2.7e-74   1.6e-70       1     314 [.      88     397 ..      88     398 .. 0.94

  Alignments for each domain:
  == domain 1  score: 238.0 bits;  conditional E-value: 2.7e-74
                 EEEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-EEEEEEEEEECTTS.EEEEEEEEEEEEETTEEEEEEEEEEEEEESS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   1 eYfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstykkngkslsisYGdg.svsGflsqdtvkvggltvknqefgeatkepg 98 
                 eY  +++iG  +q+f+++fDTGSsdlWV  s+ +  s+ + h+ y+ps+S+t+ ++g+++sisYGdg s+sG+++ dtv++gg tv++q++++a+k+++
  KKY17526.1  88 EYTCPVTIG--DQTFELDFDTGSSDLWVLGSSLS--SKGNGHTYYTPSSSATR-ESGETWSISYGDGsSASGTVYSDTVTIGGTTVTGQAVESASKASS 181
                 69999***9..58*****************9996..78999999999988776.89******************************************* PP

                 HHHTTSSSSEEEE-S-GGGSCGG...SCCHHHHHHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGEEEEEEEEEESS.TSSTEEEEEEEEETTEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
         Asp  99 stflaakfdGiLGlgfkeisvee...atpvfdnlvsqglikepvfsvylnreeeeggeivfGgvDeskykGsltyvpvts.kgywqielesvtvggktv 193
                 +++++++ dG++Gl+f++i++ +   ++++f n ++qgl  e +f+  l   ++e g+++fG +D+s+y+G++ty++v+  +g+w+++  ++ vg+ ++
  KKY17526.1 182 EFTASSPEDGLVGLAFDSINTASpnqVSTFFTNAIDQGL-PEALFTALLK--HNEAGKYTFGELDSSQYSGDITYTDVDDsDGFWTFSPSGYAVGSGST 277
                 ********************9987767778******985.899******5..99************************98799**************** PP

                 EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEETTCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSEEEESEEECCTSSSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 194 lcssgcqailDtGTsllalptsivekiakaigakksesegeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesqCilglvseeegdlwiLG 292
                  +ss    i+DtGT+l+ l+ts++++++ ++++++ ++ +++++dCd+  slpd++++i+g +  vp + + + ++   +++C+ g++++ +    i G
  KKY17526.1 278 KSSSALTGIADTGTTLMLLDTSVASAYWGQVSSASYTD-ETWIFDCDDADSLPDFTLVIEGYEAVVPGEYMNYAPNG--DGTCYGGIQPDTSIGFAIYG 373
                 9********************************99999.9*******************************999985..479***************** PP

                 HHHHTTEEEEEE..TTTTEEEEEE CS
                 xxxxxxxxxxxx..xxxxxxxxxx RF
         Asp 293 dvFlrsayvvfd..ldnnrvglAe 314
                 dvFl+s +vvfd    + r+g+A+
  KKY17526.1 374 DVFLKSQFVVFDktQSTPRLGFAA 397
                 ************433456888885 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00021       1.3       1      50 [.      89     135 ..      89     140 .. 0.71
   2 !   20.5   1.8   7.7e-08   0.00046      71     153 ..     132     210 ..     116     241 .. 0.69
   3 ?   -3.7   0.1         2   1.2e+04      14      29 ..     283     298 ..     276     315 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00021
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksst 50 
                 Y+  + iG   q++ l++DtGs+ +Wv  +  + ++ + +++++ps+s t
  KKY17526.1  89 YTCPVTIGD--QTFELDFDTGSSDLWVLGSSLS-SKGNGHTYYTPSSSAT 135
                 777788887..69**************985555.3444445555555554 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 7.7e-08
      TAXi_N  71 ksgsssstceyeisygadgssssGvlatdtltlsstdgksvkvp.nlvfGCgk.snlgglaagadGilGLGrgklSlvsqlaskg 153
                 +s++++s  + +isyg dgss+sG++ +dt+t+  t     +v+ + v + +k s++ +  +  dG++GL++ ++  +s  + ++
  KKY17526.1 132 SSATRESGETWSISYG-DGSSASGTVYSDTVTIGGT-----TVTgQAVESASKaSSEFTASSPEDGLVGLAFDSINTASPNQVST 210
                 5555666677899**8.****************444.....44423333444434455555568********9988776555444 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 2
      TAXi_N  14 lklvvDtGsdltWvqC 29 
                 l+ ++DtG  l+ ++ 
  KKY17526.1 283 LTGIADTGTTLMLLDT 298
                 5567888888887765 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   4.3e-07    0.0026       2      89 ..      92     196 ..      91     197 .. 0.74
   2 ?    3.6   0.2     0.018   1.1e+02      11      30 ..     284     303 ..     277     315 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.3e-07
  Asp_protease_2   2 pvtinGkpvrfllDTGastt.lispelaekl.........glkvreseltvrvsgaggevkarlvrldslklggltlknvpalvld.......lg 79 
                     pvti+++++++ +DTG+s + ++ ++l  k             +res  t ++s  +g++ + +v  d++++gg t++++++  +          
      KKY17526.1  92 PVTIGDQTFELDFDTGSSDLwVLGSSLSSKGnghtyytpsSSATRESGETWSISYGDGSSASGTVYSDTVTIGGTTVTGQAVESASkasseftAS 186
                     89****************75499999997766666444442222333334555668999999*****************9988777666666555 PP

  Asp_protease_2  80 eeidglLGmd 89 
                     +++dgl G+ 
      KKY17526.1 187 SPEDGLVGLA 196
                     6778888875 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.018
  Asp_protease_2  11 rfllDTGasttlispelaek 30 
                     + + DTG + +l+++++a +
      KKY17526.1 284 TGIADTGTTLMLLDTSVASA 303
                     5689*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.52
# Mc/sec: 2312.81
//
Query:       KKY17527.1  [L=473]
Description: putative chromatin remodeling and histone acetyltransferase complexes subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     1e-138  462.4   0.0   1.1e-138  462.2   0.0    1.0  1  Actin     Actin
    1.9e-05   23.7   0.1       0.51    9.1   0.0    3.1  3  MreB_Mbl  MreB/Mbl protein


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  462.2   0.0  1.3e-142  1.1e-138       1     407 []      17     473 .]      17     473 .] 0.95

  Alignments for each domain:
  == domain 1  score: 462.2 bits;  conditional E-value: 1.3e-142
       Actin   1 gdevsavVlDnGssttraGyagedaPkavipslvgkprgrkveaklyvgdealt.krpelevrspv.edGvvedwdaveelwehvlkeelkvdp..... 92 
                 gdevsa+VlD Gsst+r+G+aged+Pk+++p+ +g+ +g+       +gd+ ++ ++p+le+++p+ +dG+vedwd++e+lw++++ ++l+ ++     
  KKY17527.1  17 GDEVSALVLDAGSSTVRVGFAGEDTPKSIVPTSYGELEGK-----QIFGDHVIDlPKPNLEIKNPMnKDGLVEDWDVAERLWRYSFASKLTGQRpnral 110
                 599************************************7.....589***99999***********************************99889999 PP

       Actin  93 ...........................eehpllltepplnppkqrekalEivfEkfkvpalylaksavlsafasgkstglvvDsGasvtsvvpVldGyv 164
                                            e+hpl +te+++n++k + ka+Ei++E++++pa+y++k+ v++afasgk+t+l++D+Ga+vtsv+pV+dG++
  KKY17527.1 111 qdwlndpsqvpnltqamkdavetekalEDHPLFMTEASWNTSKGKDKAIEIAMENWGTPAFYMGKTGVMAAFASGKATALIIDIGAKVTSVTPVHDGLI 209
                 *************************************************************************************************** PP

       Actin 165 LkkairrsdlgGkaLteqlkellss..knvevtprylikkkkvveaessae...keelekltesyktleeeevleeiKesvcevsedpeg......... 249
                 Lkk+++rs+l+G++L++q++++l +  +++++tp+y++k+k++v+  ++a+   ++   + + s++ ++ee++++e+Ke+v++v+   +          
  KKY17527.1 210 LKKGVTRSSLAGNFLSSQIRAMLATrtNPITITPHYMVKSKTPVDLDQPANfiaRTFDVAPQPSFRRYQEERTIQEFKECVVQVWPGGQPlmqqvngnq 308
                 **********************9987789*********************99988999999************************99887666666544 PP

       Actin 250 .deekss...sspeksYeLPDgseiklgeeRfkvpEiLFdpsligsesaleee.....kskllgiselivaainacdvdlrpeLlanivvtGGnsllpg 339
                  +e   +     p++++e+PDg +  +++eR++v+E+LFd  ++ +   +e++     +++ ++++ li++a++++dvdlrp+Ll+n+vvtGG+sl++g
  KKY17527.1 309 tQE---DllkGLPGRPFEFPDGFNSAFTSERYRVAEALFDTRAYIEPADPEDKqnfpaPTTSQTLPALIKTALQNIDVDLRPHLLSNVVVTGGTSLVHG 404
                 333...1555999999************************9888776655555799999**************************************** PP

       Actin 340 lteRlekelaqlaskgvkvkiiapee..erkysaWiGGSiLAslgtfqqlwvskqEYeEqGssvverkck 407
                 l++Rl++el + +++++++k ++p++  erk+++WiGGSi+Aslgtf+q+w+sk+EYeE+G+ +ve++ck
  KKY17527.1 405 LNDRLNAELVK-MYPSSRIKLHSPGNlaERKFGSWIGGSIMASLGTFHQMWISKKEYEEHGPGIVEKRCK 473
                 ***********.*********************************************************7 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0014        12      56     107 ..      70     123 ..      61     138 .. 0.72
   2 !    6.1   0.3   0.00048       4.3     109     186 ..     156     230 ..     125     248 .. 0.79
   3 !    9.1   0.0   5.7e-05      0.51     255     296 ..     372     412 ..     363     418 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0014
                 TEEEE-SE.ETTEESSHHHHHHHHHH.HHHHHHTSS-SS--EEEEEE-SS--HH CS
    MreB_Mbl  56 nikavrPl.kdGviadlevaeellky.fikkvkkkkslskprvvicvPsgitev 107
                 n+++  P+ kdG ++d +vae+l +y f +k++ ++  +  +  +  Ps++ ++
  KKY17527.1  70 NLEIKNPMnKDGLVEDWDVAERLWRYsFASKLTGQRPNRALQDWLNDPSQVPNL 123
                 78889999779*************983455666666556666666666665555 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.00048
                 HHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEEEEEES..-SHHHHHHHHHH CS
    MreB_Mbl 109 rrAvkeaakkaGarevllieeplaAAiGaglpveepsgnmvvdiGggttevavislggivtsksvr..vaGdeldeaiik 186
                  +A++ a+++ G+   ++ ++ ++AA  +g      +  +++diG+  t+v+ +  g i ++   r  +aG+ l ++i  
  KKY17527.1 156 DKAIEIAMENWGTPAFYMGKTGVMAAFASGK-----ATALIIDIGAKVTSVTPVHDGLILKKGVTRssLAGNFLSSQIRA 230
                 6899999999999999999999999999884.....5679***********98887777665433322688888777765 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 5.7e-05
                 HHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHH CS
    MreB_Mbl 255 eavkevLektppeLaadivdrgivltGGgallkgldkllsee 296
                   +k++L+++  +L   ++ + +v+tGG++l++gl++ l+ e
  KKY17527.1 372 ALIKTALQNIDVDLRPHLLSN-VVVTGGTSLVHGLNDRLNAE 412
                 578999999999999999987.7889**********999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3246.57
//
Query:       KKY17528.1  [L=234]
Description: hypothetical protein UCRPC4_g05501 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-10   41.6   0.7    1.7e-10   41.6   0.7    2.1  2  Hep_59    Hepatocellular carcinoma-associated antigen 59


Domain annotation for each model (and alignments):
>> Hep_59  Hepatocellular carcinoma-associated antigen 59
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.7   9.4e-15   1.7e-10      17     105 ..      23      94 ..      14      95 .. 0.69
   2 ?   -0.2   0.2     0.096   1.7e+03      34      60 ..     151     174 ..     124     204 .. 0.51

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 9.4e-15
      Hep_59  17 kYIeeeLakrkgkskqeqeeeeekeseassksedaedelyevpehlkvsskkeeeealsnqmlggIpEVdLgieaklkNieetekakrk 105
                 ++Ie+eLa+r+++       +++ ++ +s+++ +++++   +p +    +  e++ a     lg+++E+dLg++a l+N e+te+a r+
  KKY17528.1  23 AFIESELARRNNE------HSQSLDTRQSKRETQSQQN---LPGS----KLPERQAA----SLGKLQEIDLGQDATLRNLERTEAAVRR 94 
                 7********7522......2222333333333333333...3432....22466777....9************************986 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.096
      Hep_59  34 qeeeeekeseassksedaedelyevpe 60 
                 +  ++ ++ ea++ + da+++l    e
  KKY17528.1 151 DAVNTRNQPEAEAGDGDADERLA---E 174
                 22233333333333333333322...2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1847.14
//
Query:       KKY17529.1  [L=514]
Description: putative nitrate transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-30  103.8  19.2    1.3e-29  103.2  19.2    1.2  1  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.42   10.8   0.0       0.42   10.8   0.0    2.7  2  ESSS      ESSS subunit of NADH:ubiquinone oxidoreductase (com
        8.8    6.4  14.9      0.092   12.8   0.9    3.2  4  DUF2784   Protein of Unknown function (DUF2784)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2  19.2   2.2e-33   1.3e-29       2     352 ..      41     471 ..      40     472 .. 0.83

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 2.2e-33
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlga 99 
                 ++++++++++++++ p+l+l++++dl+++++++     +  +++++  l++G+  drfG+r v+ ++ll+ a+  +l+++ a +   l+++r++ G+  
  KKY17529.1  41 WFGFMIAFWSWYAFPPLLSLTIKKDLHLTETQVLNSNIIALVATLLVRLVAGPACDRFGPRYVFAACLLIGAIPtALAGA-AYTASQLMAVRFFVGIL- 137
                 799*****************************99999999999*******************************333333.444447**********9. PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslg.........Wravfyilaivsllafvlfllllpeepperkrkspkeee 188
                 g++f  ++++ +  f k+  g  +++ +++ ++G  +++ l +++  s+++         Wr++f++  i   ++++  +l+ p++p+ ++ +++    
  KKY17529.1 138 GGSFVPCQVWSTGFFDKNVVGTSNAITAGFGNAGGGITYFLMPAIFdSLVSrqhltphvaWRVSFIVPFICITVVAISLVLFCPDTPTGKWSERHLHAQ 236
                 899999***************************************955555*****************9999999996678889999999999999999 PP

       MFS_1 189 ..................................................................kgtgpaplvp......awkallkdpvlwillia 215
                                                                                   +               a k   +++     l++
  KKY17529.1 237 qnlashgitanivdapqdsvlskysvdgnpgtngadeklnydakpanygdheaqlppqtlldtargEVI------VkptlkeAAKVTISPQ----TLVT 325
                 ***********************************************9999866666665554444222......0233333455666666....5555 PP

       MFS_1 216 lllfffgfsg...lltllplylqevlglsglllaglllallalvgailallagrlsdr.....lgr.rrrlllallllllaalglallavtssavllll 305
                 + + f+ f +   + + l +y+ + ++  g   +g   a+++l+++++++++g ++d        + ++  ++  +l +l+ ++l++++v+ +++  + 
  KKY17529.1 326 AGCYFCTFGAelaINSILGSYFLKNFKSLGQTGSGRWAAMFGLLNVVFRPIGGLVADYlyqrtN-SiWPKKIWLHALSVLLGIFLVVIGVC-DPHDKAT 422
                 5555444444666999999997888777777899999999999999999999998888755543.36888999999999999999999999.4444444 PP

       MFS_1 306 vlvl...iGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 ++ l   + f+l  ++++  al+ + +p  ++g +sg+++ ag+lgg+++
  KKY17529.1 423 MMGLhagMAFFLEAANGANYALVPHIHP-FANGIVSGVTGAAGNLGGIVF 471
                 4444422555555569999999999997.******************997 PP

>> ESSS  ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   2.7       2.1   1.2e+04      53      76 ..      35      58 ..      28      61 .. 0.85
   2 ?   10.8   0.0     7e-05      0.42      49      84 ..     196     231 ..     188     242 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.1
        ESSS 53 avfffgvsivlVlgsvfvaYlpdt 76
                 vfff+  + ++++  ++a+ p  
  KKY17529.1 35 RVFFFSWFGFMIAFWSWYAFPPLL 58
                589***999999999999999865 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 7e-05
        ESSS  49 enmeavfffgvsivlVlgsvfvaYlpdtsiqeWArr 84 
                  +++++f++ ++ + V++   v + pdt   +W+ r
  KKY17529.1 196 VAWRVSFIVPFICITVVAISLVLFCPDTPTGKWSER 231
                 58********************************98 PP

>> DUF2784  Protein of Unknown function (DUF2784)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.9       1.8   1.1e+04      16      28 ..      38      51 ..      29      60 .. 0.53
   2 ?    3.4   0.0     0.013        76      33      69 ..     198     237 ..     172     256 .. 0.73
   3 ?   12.8   0.9   1.5e-05     0.092      10      50 ..     366     414 ..     361     418 .. 0.91
   4 ?   -3.3   0.1       1.5   8.8e+03      93     109 ..     483     499 ..     470     502 .. 0.56

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.8
     DUF2784 16 lFvvlGglli.wrw 28
                 F  +G +++ w+w
  KKY17529.1 38 FFSWFGFMIAfWSW 51
                34444533334444 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.013
     DUF2784  33 w...lHlaaialvaasellglaCplTdlenqlreaageaa 69 
                 w   + ++ i+++++   l l Cp T+  ++  +++  ++
  KKY17529.1 198 WrvsFIVPFICITVVAISLVLFCPDTPTGKWSERHLHAQQ 237
                 3333556777777777778899****99988877765554 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 1.5e-05
     DUF2784  10 lHllfvlFvvlGglli........wrwvrtlwlHlaaialvaasellgl 50 
                 + ll v+F  +Ggl++          w++ +wlH ++++l+++ +++g+
  KKY17529.1 366 FGLLNVVFRPIGGLVAdylyqrtnSIWPKKIWLHALSVLLGIFLVVIGV 414
                 557889******************9********************9997 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 1.5
     DUF2784  93 tavqlllallvlllwvl 109
                 ++ +++++++++ ++++
  KKY17529.1 483 AKTYWVIGIMIIGINLC 499
                 44566666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.51
# Mc/sec: 3061.57
//
Query:       KKY17530.1  [L=382]
Description: putative tam domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-19   70.8   0.0    1.8e-19   70.1   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    1.5e-09   38.4   0.0    6.8e-09   36.3   0.0    2.1  1  Methyltransf_25  Methyltransferase domain
    8.6e-08   32.8   0.0    4.5e-07   30.5   0.0    2.1  1  Methyltransf_12  Methyltransferase domain
    3.3e-06   27.6   0.0    1.4e-05   25.7   0.0    2.0  1  Methyltransf_11  Methyltransferase domain
    7.2e-06   25.9   0.0    0.00027   20.7   0.0    2.4  1  Methyltransf_31  Methyltransferase domain
    0.00096   18.7   0.0       0.11   12.0   0.0    2.3  2  Methyltransf_4   Putative methyltransferase
  ------ inclusion threshold ------
      0.019   14.5   0.0      0.034   13.7   0.0    1.3  1  MTS              Methyltransferase small domain
      0.052   13.7   2.1       0.11   12.7   2.1    1.5  1  DUF4633          Domain of unknown function (DUF4633)
      0.072   12.4   0.0       0.11   11.8   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain
       0.16   11.2   0.0       0.53    9.5   0.0    1.8  2  CMAS             Mycolic acid cyclopropane synthetase
        0.2   11.4   0.0       0.32   10.7   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   1.1e-22   1.8e-19       8     164 ..      83     254 ..      74     255 .. 0.84

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 1.1e-22
  Methyltransf_23   8 elsdklerllpklraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdpp 99 
                       ls+ ++ ++p+l++   +Ld+G+GtG+++ ++ e+    +vtg Dlsp +  +++   + + d + e+++a + g+fdlI+++++l++++++ 
       KKY17530.1  83 LLSEGRLHFSPTLFPT-AILDVGTGTGTWAIEMGERYPdaTVTGTDLSPCQPFEVPPNVCFEIDDASEDDWARDLGSFDLIHSSMMLGSFESFR 175
                      5556666666655544.59**************77655569************999888888888889999*********************** PP

  Methyltransf_23 100 ellrqiatllkpg.Gylllse..plasl.....kedrllldwlylvpag..rhi....sffsarslkelleeaGlevve 164
                      + +r+ +++lkp+ G+l++ e  p+a++      +d+ +++w+ l ++   +++        a+ +   +++aG+ +ve
       KKY17530.1 176 KFVRTSYKYLKPDnGWLECWEldPTARCddntvRSDSPFQEWEDLLHEAaeEKLdpprPIRYAHRISSYMRNAGFVDVE 254
                      ***********999*****9955566669999889999****888777767666666678889999999*****99997 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   4.2e-12   6.8e-09       1      96 [.     100     188 ..     100     188 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 4.2e-12
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC..CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda..edlpfedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      +Ld+G+GtG++++++ +r+++a+vtg+D+s+ +  ++        +nv f+  da  +d+  + gsfDl++ss++l  ++    +k+++  ++ 
       KKY17530.1 100 ILDVGTGTGTWAIEMGERYPDATVTGTDLSPCQPFEVP-------PNVCFEIDDAseDDWARDLGSFDLIHSSMMLGSFE--SFRKFVRTSYKY 184
                      8******************99**********9876654.......46678888885466999**********98888887..799********* PP

                      EEEE CS
  Methyltransf_25  93 Lkpg 96 
                      Lkp+
       KKY17530.1 185 LKPD 188
                      **96 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   2.7e-10   4.5e-07       1      98 [.     101     191 ..     101     192 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 2.7e-10
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+GtG+ + ++ e+ pd+++tg+D+sp +       +    +n + +++   +d+  +d  +sfDl+++s  l  ++  r++++  +k Lk
       KKY17530.1 101 LDVGTGTGTWAIEMGERYPDATVTGTDLSPCQP------FEV-PPNVCFEIDDASEDDWARDL-GSFDLIHSSMMLGSFESFRKFVRTSYKYLK 186
                      8*****************************999......333.33344444444444455555.5***************************** PP

  Methyltransf_12  95 p.gGr 98 
                      p +G+
       KKY17530.1 187 PdNGW 191
                      *6665 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   8.5e-09   1.4e-05       1      91 [.     101     188 ..     101     193 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 8.5e-09
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTS.S-T.T-EEEEEEES-CCC-CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaeklp.fed.nsfDlvvssevlhhvedpekalkeiaRvLkp 90 
                      LdvG+GtG  a ++ +r+  a+v+g+Dls+ +        ++++  v f   da++    +d +sfDl+ ss++l  +e  +k+++  ++ Lkp
       KKY17530.1 101 LDVGTGTGTWAIEMGERYpdATVTGTDLSPCQP-----FEVPPN--VCFEIDDASEDDwARDlGSFDLIHSSMMLGSFESFRKFVRTSYKYLKP 187
                      8**************9999**********9887.....344444..666666666543134458****************************** PP

                      E CS
  Methyltransf_11  91 g 91 
                      +
       KKY17530.1 188 D 188
                      7 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.7e-07   0.00027       6     113 ..      99     195 ..      97     231 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.7e-07
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld...nveFeqgdieeleklled..ekfDlilsnevlnaladpdkil 94 
                       +lD+G+GtG+ ++e+  e +p+a+v+G D s+           ++ ++   nv Fe+ d+ e +  +++   +fDli+s   l  + +  k+ 
       KKY17530.1  99 AILDVGTGTGTWAIEMG-ERYPDATVTGTDLSP-----------CQPFEvppNVCFEIDDASEDD--WARdlGSFDLIHSSMMLGSFESFRKFV 178
                      69***************.889**********99...........334444479999999999977..777789999999999999999999999 PP

  Methyltransf_31  95 eeiervlkpggilliedpr 113
                      +   ++lkp+   l  +++
       KKY17530.1 179 RTSYKYLKPDNGWL--ECW 195
                      99999999987666..565 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   6.6e-05      0.11       5      32 ..     100     127 ..      97     131 .. 0.90
   2 ?    4.2   0.0     0.016        26      31      56 ..     306     331 ..     303     337 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.6e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEE CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiE 32 
                     +l++G+G G++ +++ ++ Pd ++ G +
      KKY17530.1 100 ILDVGTGTGTWAIEMGERYPDATVTGTD 127
                     79********************998876 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.016
                     EES-HHHHHHHHHHHHHCTTSSEEEE CS
  Methyltransf_4  31 iEirvkvvakvlkkiealelkNlril 56 
                     iE+r  +v+k +k  +++ ++Nl+++
      KKY17530.1 306 IEVRLALVRKSMKDRNQHAYQNLHVV 331
                     8***********************97 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.1e-05     0.034      33      64 ..      98     129 ..      89     131 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.1e-05
                 SEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  33 gkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                   +lD+G+G+G  ++++ +++p+a+vt +d +
  KKY17530.1  98 TAILDVGTGTGTWAIEMGERYPDATVTGTDLS 129
                 569************************99976 PP

>> DUF4633  Domain of unknown function (DUF4633)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.1   6.7e-05      0.11      13      67 ..     321     379 ..     311     381 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.7e-05
     DUF4633  13 PrpsYgkLqepwgrpl....egrlrRalslrqgreksRsrdlesgpegldvpgqeilpg 67 
                  + +Y++L+  wgr      e+r+rR l  ++++ ++R r l s    +d++++  +++
  KKY17530.1 321 NQHAYQNLHVVWGRRPsteqEPRIRRQLEQKKREREARRRTLASLGAAVDSSAHTGPAS 379
                 5789*********8544777**********************99989999999876665 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.8e-05      0.11      64      95 ..      98     129 ..      37     132 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.8e-05
                     SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  64 kslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     + ++DvG GtG  a ++ + yP  +v+  Dl+
      KKY17530.1  98 TAILDVGTGTGTWAIEMGERYPDATVTGTDLS 129
                     5799**********************999985 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00032      0.53      65     156 ..      99     185 ..      88     194 .. 0.68
   2 ?   -2.3   0.0       1.3   2.2e+03      65      85 ..     270     290 ..     259     295 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00032
                 EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHH.HHHHHTS-SSS-EEEEES-GGG-----SEEEEES-GGGTSGGGHHHHHHHHHHHS CS
        CMAS  65 tlLdiGcGWGslvrravery.dvkvvglTlSkeqakla.kkrvdeldlerkvevklldyedldekvdrvvsvgafehvgkenydtffkklkkll 156
                  +Ld+G+G G+ ++++ ery d+ v g  lS  q   +  +++ e+d     + +  d+    + +d + s  ++  +  e++ +f+++ +k l
  KKY17530.1  99 AILDVGTGTGTWAIEMGERYpDATVTGTDLSPCQPFEVpPNVCFEID-----DASEDDWARDLGSFDLIHSSMMLGSF--ESFRKFVRTSYKYL 185
                 68******************99*********8875443034444444.....33445555444556666665555543..45555555555555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.3
                 EEEEES-TTSHHHHHHHHHH- CS
        CMAS  65 tlLdiGcGWGslvrraveryd 85 
                 +l ++G  WG+++ + ++ + 
  KKY17530.1 270 KLKELGRRWGEMMLEGMSGFT 290
                 57789999*****98877665 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0002      0.32      47      83 ..      97     133 ..      80     154 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0002
  Methyltransf_16  47 klsvlELGsGtGlvGlavaellpeakviltDleelle 83 
                      ++ +l++G GtG   + + e +p+a v+ tDl+  ++
       KKY17530.1  97 PTAILDVGTGTGTWAIEMGERYPDATVTGTDLSPCQP 133
                      5689****************************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2798.23
//
Query:       KKY17531.1  [L=267]
Description: putative major facilitator superfamily protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-09   37.3  48.9    1.5e-07   30.7  27.1    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7  27.1   8.1e-12   1.5e-07     121     327 ..       1     189 [.       1     191 [. 0.81
   2 !   19.8  13.8   1.7e-08   0.00031      55     169 ..     132     252 ..     130     263 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 8.1e-12
       MFS_1 121 raigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwillialllf 219
                 +aig++++g+slG i+ p++   l++++ + ++  ++++++l  ++ + l+ +  ++++++ +   +            w+++   p++  ++i+++++
  KKY17531.1   1 MAIGIAASGSSLGGIIYPIVFYRLLDQIDFGWSVRVVGFIALATLL-VPLFCMKMRVKPPKARALVD------------WTLFTDGPFMV-FVIGSIVG 85 
                 69***************************************99855.67777777777777766666............88888888775.9******* PP

       MFS_1 220 ffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvf 318
                 f+g++ +l+++  +     g+ +  l+ +++++l + +++++ +   ++d++g+   l+++ +++l++ ++++ +   +++  ++++ +l+Gf++g+++
  KKY17531.1  86 FIGLYVVLFYISAF-AYEEGILNSSLSFYIIPILNASSMFGRTIPNIVADKIGP---LNVITPGALVCGVLIFGMIGVHNTGGIVVIALLFGFFSGVFV 180
                 *************8.7777777447777788888888888899999999**997...6666666666666666666665668888888999**999998 PP

       MFS_1 319 psllalasd 327
                 ++  +++++
  KKY17531.1 181 ALPPVCLVS 189
                 877777665 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 1.7e-08
       MFS_1  55 lsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlgagalfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslg.. 149
                 ++d++G+  v+  g+l+ ++  ++++++ ++   ++v  +l G+++g+++++  + ++ ++++ ++ g  ig++ + +++G++ g + gg l++ ++  
  KKY17531.1 132 VADKIGPLNVITPGALVCGVL-IFGMIGvHNTGGIVVIALLFGFFSGVFVALPPVCLVSLTKDkTKIGTRIGMAFGIIGFGTLAGGPGGGDLLQRYSnn 229
                 79*******************.444433488889*****************************99********************************** PP

       MFS_1 150 ...Wravfyilaivsllafvlfl 169
                    W+++++  +++ ++a+v+fl
  KKY17531.1 230 vpdWTYLWIYGGVADIVACVIFL 252
                 ******99999999999988543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.50
# Mc/sec: 1605.14
//
Query:       KKY17532.1  [L=1425]
Description: putative glycosyl transferase family 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-53  179.5   3.0    2.5e-52  177.7   3.0    2.0  1  Glyco_trans_2_3  Glycosyl transferase family group 2
    6.8e-05   22.7   0.0     0.0019   18.1   0.0    2.6  2  Glycos_transf_2  Glycosyl transferase family 2
  ------ inclusion threshold ------
      0.029   13.8   0.5      0.067   12.7   0.0    1.9  2  Glyco_transf_21  Glycosyl transferase family 21


Domain annotation for each model (and alignments):
>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.7   3.0   4.1e-56   2.5e-52       1     195 [.     532     745 ..     532     751 .. 0.80

  Alignments for each domain:
  == domain 1  score: 177.7 bits;  conditional E-value: 4.1e-56
  Glyco_trans_2_3   1 iilllDaDtvlppdclreiaaela.spevaivqgpvlvmnv.anwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalqevg.... 88 
                      +ill+D+Dt++p dc++++++e++ sp vai+q+ ++vmnv  +++e+ ++ ff++ ++ +i +++a+g+v+p+vG++aflr+sa+q+++    
       KKY17532.1 532 YILLIDSDTRVPVDCFLDAVSEMEtSPQVAIIQHSSGVMNVtTSFFEKGIT-FFTNLVYTMITFAVANGDVAPFVGHNAFLRWSAVQDIAytcp 624
                      79**********************67*************883555566665.66678999********************************** PP

  Glyco_trans_2_3  89 ......gwdgdessvsEDfdmglrlqrkGyrvrfvpes..lvkekspltlraalrQrkRwayGc.el..eklillvrll...gylgsllwsalp 168
                            +w+  es+vsEDfdm+lrlq+ Gy++r+++++  ++ke+++lt++++l++++++ayGc el  ++l++++ +     ++++++ s++p
       KKY17532.1 625 idgtekYWS--ESTVSEDFDMALRLQTSGYILRLASYAngGFKEGVSLTVYDELARWEKYAYGCnELvfHPLRYWLFRGpftPLFRRFMGSNMP 716
                      *********..****************************99***********************744765555554444333444555555555 PP

  Glyco_trans_2_3 169 ..lhlallllfsllalalvlllllllaal 195
                          ++++   + ++ ++++++++ll ++
       KKY17532.1 717 lpSKFTIMAYVGTYYAIASAWVFVLLNYF 745
                      22444555445555533443444443333 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.032   1.9e+02       5      52 ..     383     439 ..     379     479 .. 0.83
   2 !   18.1   0.0   3.1e-07    0.0019      80     168 ..     530     618 ..     527     620 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.032
                      EESS-..TTTHHHHHHHHHHH.....GGCCEEEEEEEEES-SSCHHHHHGGGCH..C CS
  Glycos_transf_2   5 ptyNe..ektlletlesllaq.....dpypdfeiivvDDgStDetveileelak..e 52 
                      p+y e  ++ +  t+ s++a             i++ DDg +  ++e ++e ++  e
       KKY17532.1 383 PVYKEglWSVIHPTVQSVKAAistyeMQGGTANIFINDDGMQLISPEEAQERREyyE 439
                      99*******************999876777777788888878888888887776543 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 3.1e-07
                      SSEEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS.EEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHH CS
  Glycos_transf_2  80 gdyilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrv.generlyfkerkrslkgnlsfeigsaallrrealee 168
                      gdyil++D+D+ ++ d++ + v ++e   ++v++ q+    ++ ++    k++ ++ + +y+ ++    +g+++ ++g++a lr +a+++
       KKY17532.1 530 GDYILLIDSDTRVPVDCFLDAVSEMET-SPQVAIIQHSSGVMNVTTSFFEKGItFFTNLVYTMITFAVANGDVAPFVGHNAFLRWSAVQD 618
                      9**************************.777888888888777777777777779*****************************999876 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.1e-05     0.067      32     147 ..     531     658 ..     522     681 .. 0.66
   2 ?   -3.1   0.2       0.8   4.8e+03     140     171 ..    1030    1058 ..    1027    1059 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.1e-05
  Glyco_transf_21  32 dllvisDsdvrvkpdyLeellaaled.pkvglVtslpvgsdakg.laaaleaaflntlagvlqa..klsglgfavGksmalrreaLeaiGGfea 121
                      d++++ Dsd+rv+ d + + + ++e+ p+v+++++ + +++  + +  +    f n ++ +++   + + +   vG    lr +a+++i    +
       KKY17532.1 531 DYILLIDSDTRVPVDCFLDAVSEMETsPQVAIIQHSSGVMNVTTsFFEKGITFFTNLVYTMITFavANGDVAPFVGHNAFLRWSAVQDIAYTCP 624
                      89***********99655555555544***********99998625555555555555444444222468899999999999999998864433 PP

  Glyco_transf_21 122 l........adeLAeDyalgkllraaGlkvvlsp 147
                      +          ++ eD+ ++ +l+  G+ ++l++
       KKY17532.1 625 IdgtekywsESTVSEDFDMALRLQTSGYILRLAS 658
                      3111111122345666666666666666665555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.8
  Glyco_transf_21  140 GlkvvlspapiaqtsvprrsslrallaRqlrW 171 
                       G+++ +s   ++q+ +   + +++ ++R++ W
       KKY17532.1 1030 GWSFNCSVLCFRQKPG---NIYEKRWERWCAW 1058
                       8889999998888664...4678889999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.54
# Mc/sec: 7987.98
//
Query:       KKY17533.1  [L=224]
Description: putative snf7 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-36  123.8  19.0    5.5e-36  123.8  19.0    2.0  2  Snf7       Snf7
  ------ inclusion threshold ------
       0.93    8.0  12.5       0.98    8.0  11.3    1.5  1  DUF3138    Protein of unknown function (DUF3138)
        5.3    7.5   6.4         17    5.9   6.4    1.9  1  BNIP2      Bcl2-/adenovirus E1B nineteen kDa-interacting prot


Domain annotation for each model (and alignments):
>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.8  19.0   9.2e-40   5.5e-36       2     172 ..      20     196 ..      19     197 .. 0.94
   2 ?    2.2   0.8     0.019   1.2e+02     137     154 ..     206     223 ..     199     224 .] 0.83

  Alignments for each domain:
  == domain 1  score: 123.8 bits;  conditional E-value: 9.2e-40
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        Snf7   2 airsLrkaerkldkkqeslekkikkleaelkklakkgnkdralllLKqkkryekqldqldnqlanleqvslaienlksnkevlnamkqgakamkamnkk 100
                 ai++Lr++ ++l+k++++le+  ++ +  +++++  +nk +a+ +L++kk +ek l+q+ +q  ++eq+ ++ie ++ n+e+lnamk++ +amk+++  
  KKY17533.1  20 AILALRQQLDMLQKREKHLENLMAE-QDAIARKNINTNKNAAKAALRRKKVHEKSLEQTTAQATQIEQQIYSIEAANINQETLNAMKNAGAAMKQIHGG 117
                 7899********************9.888888899999************************************************************* PP

                 TCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTT-GGTTHHHHHHHHHHHHHHHHHCSH.........HHHHHHHTXXXST CS
        Snf7 101 vdidkidklmdeiedqmekaeeisEalsrslddadeedEeeleaeLdaLeqelgdeell........desvklpevPsee 172
                 + idk+d +mde+++q +  eei  a+ ++  +++ +dE el+aeLd+Leqe  de +         de + lp++ ++e
  KKY17533.1 118 LTIDKVDATMDELREQHALGEEIASAITNAP-IGEPIDETELDAELDELEQEAMDERMIktgsvpvnDELNRLPAAANGE 196
                 ***************************9988.569**********************99999998888888888877665 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.019
                 TTHHHHHHHHHHHHHHHH CS
        Snf7 137 edEeeleaeLdaLeqelg 154
                 ++E++ e+eL +L++e++
  KKY17533.1 206 QEEDDEEEELRKLQAEMA 223
                 6799999*******9985 PP

>> DUF3138  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  11.3   0.00016      0.98      18      93 ..       9      91 ..       3     120 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00016
     DUF3138 18 aaaaat...adrikalkaqltalqrqvkelraalaaakaaaGgkissqkaaaaaaaa....aeaaaalteddvaqlkeqiana 93
                aa + +    + i al+ ql+ lq++ k+l++ +a + a a  +i++ k aa aa       e +   t  + +q+ +qi   
  KKY17533.1  9 AAQKRKdapKNAILALRQQLDMLQKREKHLENLMAEQDAIARKNINTNKNAAKAALRrkkvHEKSLEQTTAQATQIEQQIYSI 91
                4443334447899**********************************999998886645555667777888888888887543 PP

>> BNIP2  Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   6.4    0.0028        17      19     102 ..     137     217 ..      27     222 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0028
       BNIP2  19 sdsdlsqflasvtpddissledsldinvDdletpsdedslevpetlkdleweddlpakeaeaasesaeslpqysaedeardsrr 102
                  ++++s+++ +   + i+++  +ld ++D+le++  ++ +  +++ + ++  + lpa+++++ +++a+ +pq ++++ +++ r+
  KKY17533.1 137 GEEIASAITNAPIGEPIDET--ELDAELDELEQEAMDERMIKTGSVPVNDELNRLPAAANGELKGKARVTPQEEDDE-EEELRK 217
                 44444544444444777775..79***********999999999999666666677777777777776666654444.334454 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2314  (0.129065); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.53
# Mc/sec: 1277.78
//
Query:       KKY17534.1  [L=1160]
Description: putative forkhead domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-17   63.5   0.0    2.9e-17   62.7   0.0    1.4  1  Forkhead  Forkhead domain
    1.5e-08   34.9   0.0    3.6e-08   33.6   0.0    1.6  1  FHA       FHA domain
  ------ inclusion threshold ------
      0.034   14.4   0.0      0.091   13.0   0.0    1.7  1  FHA_2     FHA domain


Domain annotation for each model (and alignments):
>> Forkhead  Forkhead domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   4.9e-21   2.9e-17       2      82 ..     688     766 ..     687     771 .. 0.88

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 4.9e-21
                 -----HHHHHHHHHHT-TTT-B-HHHHHHHHHCC-HHHHC.C.-CCHHHHHHHHHHHHC-.-EEETT.-TTSS--EEE--TTH CS
    Forkhead   2 kPpysYaaLIaqAiksspekkltLseIyefieenfpyyrt.aakkgWqnSirhnLslnkc.Fekvpreeeegkgslwtidpes 82 
                 kPpy+Y+ LI++A+++sp k ltL++Iy+ ++ ++py+ +   ++gWq+S+rhnL   +  Fe  +r   +gkg+ w++ p +
  KKY17534.1 688 KPPYNYTVLIFEALQESP-KPLTLRNIYRALKLKYPYFVYrCPTDGWQSSVRHNLNGDRNlFEHAER---DGKGWSWRVVPGA 766
                 9***************96.68****************98863589***********98544****99...49*******9854 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0     6e-12   3.6e-08      15      69 .]     420     473 ..     397     473 .. 0.92

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 6e-12
                 STTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEET CS
         FHA  15 dpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigkgepveLksgdvielG 69 
                 ++siSr+H +i ++ +++ ++l+ lg +nG f+Ng+   +g   +L +g +i++G
  KKY17534.1 420 HKSISRRHVRIAWNFQQNYFELIILG-RNGAFLNGRWHAQGVALPLDHGAQIQIG 473
                 9************************9.**************************98 PP

>> FHA_2  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.5e-05     0.091      33      85 ..     420     472 ..     410     482 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.5e-05
       FHA_2  33 dkkcSrnqvelkadlekklvkvkqlGanpssvngkklkknesvelkegqtlel 85 
                  k++Sr++v++  ++++++ ++  lG+n + +ng    ++  + l +g ++++
  KKY17534.1 420 HKSISRRHVRIAWNFQQNYFELIILGRNGAFLNGRWHAQGVALPLDHGAQIQI 472
                 6789***********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1049  (0.0585086); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.31s 00:00:01.23 Elapsed: 00:00:00.51
# Mc/sec: 6823.08
//
Query:       KKY17535.1  [L=432]
Description: hypothetical protein UCRPC4_g05480 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-22   78.9   1.5    4.6e-22   78.0   1.5    1.3  1  AMPK1_CBM  Glycogen recognition site of AMP-activated protein
     0.0023   18.3   0.1     0.0044   17.3   0.1    1.4  1  CBM_48     Carbohydrate-binding module 48 (Isoamylase N-termi
  ------ inclusion threshold ------
      0.013   15.8   2.3      0.027   14.8   2.3    1.5  1  RGS12_us1  Unstructured region of RGS12
       0.02   15.5   0.5      0.049   14.2   0.5    1.7  1  CBM53      Starch/carbohydrate-binding module (family 53)


Domain annotation for each model (and alignments):
>> AMPK1_CBM  Glycogen recognition site of AMP-activated protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   1.5     1e-25   4.6e-22       3      80 ..       4      82 ..       3      86 .. 0.95

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 1e-25
   AMPK1_CBM  3 tvikWkggGkkVyvtGsfnnWkkkipLkksekdfsvilkLpeGthq.ykFiVDgewrvdpdlptatdeeGnlnNvievk 80
                 v+kW++ +++V+vtG+f++W k+++L+k +++f+  ++Lp+     ykF+VDg+w++d+++pt+td++Gn+nNv++ +
  KKY17535.1  4 FVFKWPHAASEVFVTGTFDDWGKTVQLEKVGDVFEKDVQLPSTDKVfYKFVVDGNWTTDSEAPTETDSSGNVNNVVTTE 82
                68***************************************998766****************************9876 PP

>> CBM_48  Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   9.9e-07    0.0044      18      73 ..       8      59 ..       2      72 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 9.9e-07
                E-TTSSEEEEEECGTTTEEECCB-EEECGGCEEEEEEETTSTTTT.EEEEEEEETT CS
      CBM_48 18 wapnAekVslvldfnnwdaeeiplkrrrtggvWelflpgdlphgslrYkyrvkgps 73
                w  +A +V +++ f++w +++++l++   g+v+e  ++   + ++++Yk+ v+g++
  KKY17535.1  8 WPHAASEVFVTGTFDDW-GKTVQLEK--VGDVFEKDVQLPST-DKVFYKFVVDGNW 59
                8899*************.*******6..8*****99997666.579********98 PP

>> RGS12_us1  Unstructured region of RGS12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   2.3   6.1e-06     0.027      10      64 ..     372     425 ..     364     430 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.1e-06
   RGS12_us1  10 qqvpssPaskhsvs.sdrssvstPkklskksksGrslneesgeedsekkkkGaffs 64 
                    ps P+    v  + +++vstPkk++    s  s  +  +e++ +k++   ff 
  KKY17535.1 372 AAAPSEPTVTTGVDtTTTETVSTPKKEDTPASSAASTPDGAKEDKKKKRR--SFFQ 425
                 5679999999999867889******************9999988877666..6775 PP

>> CBM53  Starch/carbohydrate-binding module (family 53)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.5   1.1e-05     0.049      10      69 ..      12      59 ..       4      76 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
       CBM53 10 akevtlhygfngWkssqdvamtksassgdseedwfeatvtvpkease.ldfvfdsegeenW 69
                a ev++ ++f++W ++  v+++k+       +d+fe +v++p++ ++  +fv+d    +nW
  KKY17535.1 12 ASEVFVTGTFDDWGKT--VQLEKV-------GDVFEKDVQLPSTDKVfYKFVVD----GNW 59
                567**********999..889***.......9***********9999999*993....344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       870  (0.0485247); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.49
# Mc/sec: 2648.56
//
Query:       KKY17536.1  [L=539]
Description: putative isocitrate lyase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.3e-295  978.6   3.5   7.1e-295  978.4   3.5    1.0  1  ICL         Isocitrate lyase family
      4e-12   46.1   0.2    1.4e-11   44.3   0.1    1.8  2  PEP_mutase  Phosphoenolpyruvate phosphomutase


Domain annotation for each model (and alignments):
>> ICL  Isocitrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  978.4   3.5  7.9e-299  7.1e-295       1     526 []      14     536 ..      14     536 .. 0.99

  Alignments for each domain:
  == domain 1  score: 978.4 bits;  conditional E-value: 7.9e-299
                 HHHXHHHHHTSGGGGG---SS-HHHHHHH--SS----THHHHHHHHHHHHHHHHHHT--EEEEB--SHHHHHHHHHH-S-EEE-HHHHHHH--TT---- CS
         ICL   1 evaevkkwwsdsrwrktkrvysaedivskrGnlkieyasseqakklfklleeheaektasktfGaldpvqvtqmakyldtiyvsGwqssstastsneps 99 
                 +va+vkkww+dsrwr tkr+y+ae+iv+krGnl+iey+s++qakkl+ ++e+++++k+as t+G+l+p+++tqmakyldt+yvsGwqssstas+++eps
  KKY17536.1  14 DVAAVKKWWTDSRWRFTKRTYTAEQIVQKRGNLRIEYPSNVQAKKLWDIVEQRFRDKEASATYGCLEPTMLTQMAKYLDTVYVSGWQSSSTASSTDEPS 112
                 699************************************************************************************************ PP

                 SS-S-S-TTHHHHHHHHHHHHHHHHHHHHHHHHHSS-HHHHTTS--------EEEE-TT-SSSHHHHHHHHHHHHHTT-SEEEE-SB-TT--------- CS
         ICL 100 pdladypmdtvpnkvehlflaqlfhdrkqkeerlkvkkeereklanvdylrpiiadadtGhGGltavvkltklfierGaaGihiedqasgtkkcGhmaG 198
                 pdladypm+tvpnkv hlf+aqlfhdrkq+eerl+++k++r+k+an d+lrpiiadadtGhGGltav+kltklfie+GaaGihiedqa+gtkkcGhmaG
  KKY17536.1 113 PDLADYPMNTVPNKVRHLFMAQLFHDRKQREERLTTPKDQRSKVANTDFLRPIIADADTGHGGLTAVMKLTKLFIEQGAAGIHIEDQAPGTKKCGHMAG 211
                 *************************************************************************************************** PP

                 EEE--HHHHHHHHHHHHHHHHHTT---EEEEE--GGGEEEES-TT-GGGGGGEEEE--TTS--HHHHHHHHHHS---SHHHHHHHHHHHHHS-EE-SHH CS
         ICL 199 kvlvpiqehinrlvairaqadilgsdllvvartdseaatlitstidtrdhafilGatnpdleeladllveaeaeGksGaelqaiedewlkkaglklfee 297
                 kvlvpi+ehinrlvairaqadi+g+dll+vartdseaatlitstid+rdhafilGatnp l++ladl+v+ae++GksG+ lqaiedew+ +aglklf++
  KKY17536.1 212 KVLVPISEHINRLVAIRAQADIMGTDLLAVARTDSEAATLITSTIDHRDHAFILGATNPSLQPLADLMVAAEQAGKSGETLQAIEDEWIGQAGLKLFDD 310
                 *************************************************************************************************** PP

                 HHHHHHHTSS-S-HHHHHHHHHHHHTT--HH...HHHHHHHHHHSS----BTTSS--TT--EEE--SHHHHHHHHHHHTTS-SEEE---SS--HHHHHH CS
         ICL 298 avvdeieksklsnkkelikkftkkvkplselsnkearklakellgkdiffdwelprvreGyyrykGgtqcsvvravafapyadliwmesklpdyaqake 396
                 +v+d+i+++ + nk +li +++k+v  +   sn ear++ak ++g di++dw++pr+reGyyry+Gg++c+++ra+a+apyad+iwmesklpdy+qa++
  KKY17536.1 311 TVIDTIKAGVHVNKDALITQYKKAVAGK---SNGEARAIAKGITGVDIHWDWDSPRTREGYYRYQGGCNCAINRAIAYAPYADMIWMESKLPDYKQAED 406
                 *************************966...567***************************************************************** PP

                 HHHHHHTT-TT-EEEEE--SSS-GGGTS-HHHHHSHHHHHHHTTEEEEEETTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTHHHHHHHT-GGGSHHHHH CS
         ICL 397 faeGvkakvpeqklaynlspsfnwkkamsadeqetyikrlaklGyvwqfitlaGlhtnalisdkfakdyakrGmkaygeevqeeeidnGvdvvkhqkws 495
                 fa+Gv+a++peqkl+ynlspsfnwk+amsa +q+tyi rl++lGy+wqfitlaGlh++alisd+fa++yak+Gm+ayge +qe+e++  +dvv+hqkws
  KKY17536.1 407 FANGVHAVYPEQKLSYNLSPSFNWKAAMSASDQRTYIARLGRLGYCWQFITLAGLHSTALISDQFARAYAKDGMRAYGELIQEPEMESKCDVVTHQKWS 505
                 *************************************************************************************************** PP

                 THHHHHHHHHHHH--XXXXXXXXXXXXXXXX CS
         ICL 496 GaeyidellklvtGGvsstaamGkGvtedqf 526
                 Ga+y+d+llk+vtGGvsst+amGkGvtedqf
  KKY17536.1 506 GANYVDNLLKMVTGGVSSTSAMGKGVTEDQF 536
                 ******************************9 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.1   1.6e-15   1.4e-11      31     146 ..      97     246 ..      83     268 .. 0.82
   2 ?   -1.5   0.0      0.15   1.4e+03     153     188 ..     373     408 ..     364     426 .. 0.73

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 1.6e-15
  PEP_mutase  31 kalatsSlavaaslGvpDgeelpleellaavraiaevvs...........................lPlivDledGygespeevaetvrrliaaGvvgv 102
                 ++  +sS a ++    pD  + p++++ + vr+++ ++                             P+i+D+++G+g     v +  + +i+ G++g+
  KKY17536.1  97 SGWQSSSTASSTDEPSPDLADYPMNTVPNKVRHLFMAQLfhdrkqreerlttpkdqrskvantdflRPIIADADTGHGG-LTAVMKLTKLFIEQGAAGI 194
                 5556777777777788888888888888888888887767788888888888888888888999999**********99.999**************** PP

  PEP_mutase 103 niEDk.....kknd.aerqlldieefaekiaaaraaaeeag..fvinARtda 146
                 +iED+     k++  a++ l++i e+ +++ a+ra+a+  g  ++ +ARtd+
  KKY17536.1 195 HIEDQapgtkKCGHmAGKVLVPISEHINRLVAIRAQADIMGtdLLAVARTDS 246
                 *****9987544455888899*****************99999********9 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.15
  PEP_mutase 153 agleeaieRaraYaeAGAdgvfvpglqkdae.iaelv 188
                 +g++ ai+Ra aYa   Ad++ + ++  d +  ++++
  KKY17536.1 373 GGCNCAINRAIAYAPY-ADMIWMESKLPDYKqAEDFA 408
                 567889*******976.78877777755533355555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.39s 00:00:01.10 Elapsed: 00:00:00.57
# Mc/sec: 2828.32
//
Query:       KKY17557.1  [L=183]
Description: hypothetical protein UCRPC4_g05458 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.54
# Mc/sec: 1016.02
//
Query:       KKY17558.1  [L=566]
Description: putative glucan endo-alpha-glucosidase agn1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   8.3e-135  449.4   7.0   8.3e-135  449.4   7.0    1.6  2  Glyco_hydro_71  Glycosyl hydrolase family 71


Domain annotation for each model (and alignments):
>> Glyco_hydro_71  Glycosyl hydrolase family 71
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  449.4   7.0  4.6e-139  8.3e-135       7     374 ..      26     402 ..      24     403 .. 0.96
   2 ?   -1.3   0.0     0.042   7.5e+02     143     163 ..     411     431 ..     406     447 .. 0.76

  Alignments for each domain:
  == domain 1  score: 449.4 bits;  conditional E-value: 4.6e-139
  Glyco_hydro_71   7 vgntenytasdwekDiklAkaagiDgFaLNigskdswtaeqladayeaAeavgfkLflSfDmava.gawpksevislikkyashpaqlkvngkpl 100
                     +gnt++++ +dwe+Di lA++a+iD+FaLNi++ d+ +a ++a+a++aA++ gfkLf+SfD+a + g+wp+++v sl+++yas++a+ +  ++pl
      KKY17558.1  26 MGNTAYFSRDDWENDIGLAQEAHIDAFALNIAYGDPDNAGSIANAFAAANSRGFKLFFSFDYA-GnGSWPQADVLSLLNEYASNSAYWHRVDQPL 119
                     79*************************************************************.55***************************** PP

  Glyco_hydro_71 101 vSTFeGeknaedwasiksalteeiffvPdfsslgaaaaaekaldvvDGlfsWeaWpkgatnmstetDeaylsalkgkpYmmpvSpwffthlgkes 195
                     vSTFeG+++++dw++ik++ t ++ff+P++sslga+ a+ek  +v+DGlfsW aWp+g+++m t+tD++y + l++kpYmmpv+pwfft++  ++
      KKY17558.1 120 VSTFEGPDSSDDWSDIKTQ-T-NCFFIPSWSSLGAKMAMEK--GVADGLFSWGAWPEGPNDMFTNTDASYEEFLNQKPYMMPVAPWFFTNM--RG 208
                     *******************.5.9***********9999995..*******************************99***************..78 PP

  Glyco_hydro_71 196 ynknwvwrgddlwakRweqvlelqpdfveiitWNDygEShYigplkek........kaqdgsskyvegmpHdgwrdllkyyiaayKtgskkpait 282
                     y+knw+wrgddlw++Rw++vl  qp+fveiitWNDygEShYigpl+++        k+++   +y+ +mpHdgwr +l+y+i++yK +   ++++
      KKY17558.1 209 YRKNWLWRGDDLWFDRWNHVLFHQPEFVEIITWNDYGESHYIGPLHDTqyevfsvgKSPY---NYALNMPHDGWRLFLPYLIDTYKYN--ISSFD 298
                     ***********************************************9999996655555...*************************..68*** PP

  Glyco_hydro_71 283 edklvlwyRphpkkakcssgdttgnpana........elleDkvfvvallkspatvtvsvggkeset.fsvk.....aGvnklsvpfngetGkvk 363
                     ++ lv wyRp+p++a c +g+ttgn+a++        e+++Dkvf++a+l+s+a+v v++g+++++  ++ +      G++++sv+fng++G+v+
      KKY17558.1 299 HEGLVSWYRPQPASA-CATGGTTGNTASQlqtvyppsEIVQDKVFFSAMLASSAEVVVTIGDSSQTAtWE-NvpdggIGIYHGSVSFNGNVGSVT 391
                     ***************.99*******************************************988844454.2468889***************** PP

  Glyco_hydro_71 364 vsvvrngktva 374
                     v+++r+g+t+a
      KKY17558.1 392 VTLSRSGTTIA 402
                     ********997 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.042
  Glyco_hydro_71 143 ldvvDGlfsWeaWpkgatnms 163
                     +++  G+ +W+aW  +a++ +
      KKY17558.1 411 TNCTKGIENWNAWVGSASASN 431
                     5778899******87775543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.35s 00:00:01.00 Elapsed: 00:00:00.55
# Mc/sec: 3106.03
//
Query:       KKY17559.1  [L=457]
Description: hypothetical protein UCRPC4_g05460 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.51
# Mc/sec: 2704.08
//
Query:       KKY17560.1  [L=480]
Description: putative tlc domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-47  159.6  22.8    7.8e-47  159.6  22.8    1.6  2  TRAM_LAG1_CLN8  TLC domain
    2.4e-19   68.7   0.3    2.4e-19   68.7   0.3    2.3  2  TRAM1           TRAM1-like protein


Domain annotation for each model (and alignments):
>> TRAM_LAG1_CLN8  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.3      0.31   2.8e+03      98     143 ..      63     116 ..      51     126 .. 0.47
   2 !  159.6  22.8   8.8e-51   7.8e-47       1     198 []     149     378 ..     149     378 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.31
  TRAM_LAG1_CLN8  98 vglvvlllhelsdpflnlrkilsylkkk........skssklvlfn..gllfllsF 143
                     +g++v+ll  l+ + l++    +  +k            + ++++    llf++++
      KKY17560.1  63 IGIAVTLLSSLVAIHLSFPNARHHTSKFyrisyynpV--TGKFAIGwdDLLFVFFW 116
                     5555555555555555544444444222333332221..22222222234444444 PP

  == domain 2  score: 159.6 bits;  conditional E-value: 8.8e-51
  TRAM_LAG1_CLN8   1 kfdervvslvqyllstvfglivlsssp......elwegyperilgathfllkayyllalgYfiydllvlllyekkrkdfvemliHhiitlvllvl 89 
                     +f+e+++ +++y +++++g++v+++s+      +lw+++p r++++   l k+yyl++ ++++++++v+++ e++rkd+++m++Hhiit++l++ 
      KKY17560.1 149 RFTEQAWITMYYGFIWMMGMYVVYNSEywldlrALWRNWPTREIDG---LTKWYYLVGFSFYLQQIVVVNI-EERRKDHWQMFTHHIITCTLIFS 239
                     69******************************************99...**********************.667779***************** PP

  TRAM_LAG1_CLN8  90 syvrnlgrvglvvlllhelsdpflnlrkilsylkkkskssklvlfngllfllsFfvcRlvllpylillsildvaklslstap............. 171
                     sy ++ ++vg+++++l+++ d+f++++kil+yl    + +++++f   +f++ +f+cR+v++ +++++si+++ +++++ ++             
      KKY17560.1 240 SYGYHQTKVGSLIMCLMDFGDIFFSVAKILKYL-HF-QRACDIMF--GVFMIAWFICRHVIY-MTVCWSIWKHIPEEIQYGCysgsdtdlqgpvp 329
                     *********************************.88.889*****..***************.6699999999999999999************* PP

  TRAM_LAG1_CLN8 172 ......................lwlpliflilllvLqllnlyWfylivk 198
                                            +++++fl++ll Lq++ l+Wf++i++
      KKY17560.1 330 vpddwshliepfhdpvglvcwnSNIQWTFLGMLLSLQAVLLMWFVMILR 378
                     ********************9999***********************97 PP

>> TRAM1  TRAM1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.3   2.7e-23   2.4e-19       1      64 []      87     145 ..      87     145 .. 0.98
   2 ?   -2.1   1.7      0.34     3e+03      28      50 ..     279     301 ..     278     307 .. 0.59

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 2.7e-23
       TRAM1   1 tskFifLsynvplsansetglYgkGlkDlafvffyvivftflRaflmeyvlrPlarrlgikkkk 64 
                 tskF  +sy     +n+ tg++++G++Dl+fvff++iv+++ R ++m+y+l+Pla  lgi+kkk
  KKY17560.1  87 TSKFYRISY-----YNPVTGKFAIGWDDLLFVFFWIIVLSGARCATMDYILDPLAFNLGIRKKK 145
                 79*******.....************************************************98 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.34
       TRAM1  28 DlafvffyvivftflRaflmeyv 50 
                 D+ f +f++  f+  + + m  +
  KKY17560.1 279 DIMFGVFMIAWFICRHVIYMTVC 301
                 56666666555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 3143.08
//
Query:       KKY17561.1  [L=219]
Description: putative longevity-assurance protein 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-31  109.6  16.8    1.9e-31  109.4  16.8    1.0  1  TRAM_LAG1_CLN8  TLC domain


Domain annotation for each model (and alignments):
>> TRAM_LAG1_CLN8  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4  16.8   1.1e-35   1.9e-31      30     196 ..       2     169 ..       1     171 [. 0.93

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 1.1e-35
  TRAM_LAG1_CLN8  30 wegyperilgathfllkayyllalgYfiyd.llvlllyekkrkdfvemliHhiitlvllvlsyvrnlgrvglvvlllhelsdpflnlrkilsylk 123
                     +egyp+r+++a   ++kayyll+++Y+ ++ ++++ll ek rkdf+e+++Hhi+tl+l+ lsy +++  +g++++++h++sd+fl+++k+l+yl 
      KKY17561.1   2 FEGYPHRTHEA---MFKAYYLLQASYWAQQaIVLILLLEKPRKDFKELVTHHIVTLALIALSYRFHFAYMGIAIYVTHDISDFFLATSKTLNYL- 92 
                     68899999998...****************88888899********************************************************. PP

  TRAM_LAG1_CLN8 124 kkskssklvlfngllfllsFfvcRlvllpylillsildvaklslstap.........lwlpliflilllvLqllnlyWfyli 196
                     +    ++  +f   +++ +++++R++l  ++il++il++++   + +          + +++i ++ll++Lq +nl+W++ +
      KKY17561.1  93 DS--VIVGPFF--TTLICVWVYLRHYLN-LQILWAILTEFRTVGPFELdwemqqykcWISQIITFALLACLQGINLIWLTYL 169
                     54..5677899..9**************.88*********9777665599****************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.52
# Mc/sec: 1277.09
//
Query:       KKY17562.1  [L=432]
Description: putative lipase esterase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-27   96.0   1.6    2.1e-27   96.0   1.6    1.8  2  CDH-cyt       Cytochrome domain of cellobiose dehydrogenase
    0.00044   20.0   5.1     0.0019   17.9   5.1    2.1  1  DUF2427       Domain of unknown function (DUF2427)
     0.0033   17.6   0.2     0.0033   17.6   0.2    1.8  2  DOMON         DOMON domain
  ------ inclusion threshold ------
       0.29   10.3  13.3       0.37    9.9  13.3    1.1  1  SOG2          RAM signalling pathway protein
        2.6    6.8   8.0        3.5    6.4   8.0    1.1  1  Apt1          Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> CDH-cyt  Cytochrome domain of cellobiose dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   1.6     6e-31   2.1e-27       9     176 ..      24     187 ..      19     193 .. 0.90
   2 ?   -3.4   2.4       1.8   6.5e+03      79     150 ..     206     229 ..     195     252 .. 0.42

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 6e-31
                 EEEEETT-SS-EEEEEEB-CCC..TS--SEEEEEEEEE-GCS--EEEEESSSSSCTSEEEEEEEE.TTEEEEEEEEBSSSSS-EE--SS-EEEEEE.EE CS
     CDH-cyt   9 tFqtytdeaggftfgialPeda..ttdatefigqlvaplsakagWaGislggsMtnnlLlvaWpn.gnevvtSfrlatgyasPevytgdakltqlsgts 104
                 tF+   +  +++++ +++P+++  + +   +i + ++p++ ++ W+G++ g++M+++ ++++++  + ++++S+rl tg+++P    +da++t+l+g+ 
  KKY17562.1  24 TFTPSGSDFSDIEYKVNIPTSTadSGSGPIYISM-QCPSD-SVEWCGLGQGSQMSGANIFIMYAAsSSNITISPRLGTGHTMPMFN-SDAQITVLEGSG 119
                 455554557899*******9999999999****9.****8.8*********************99999***************888.9*********** PP

                 E-SSEEEEEEEEET-SEEEETTEEEE--TTTEEEEEEEEESS--BSTTSCCCB-----SEEEEEEEE--CCB CS
     CDH-cyt 105 vnathftltfrCqgClsweqggtsgsastssnlvlgwAqskkaptnpaspdstlsqHdngfgqfgadlsaak 176
                 +++  +t +frC  C+sw+ gg+ +   tss++ + +A+++  + +++++++++s Hd  +g  ++dl++a+
  KKY17562.1 120 ISNGIMTGNFRCDSCSSWS-GGSMDL--TSSSSDWIYAVKNGDAITSTDQSESISEHDG-HGSATLDLTEAT 187
                 ******************5.443333..358888***********************98.********9986 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.8
                 EEEBSSSSS-EE--SS-EEEEEE.EEE-SSEEEEEEEEET-SEEEETTEEEE--TTTEEEEEEEEESS--BS CS
     CDH-cyt  79 frlatgyasPevytgdakltqlsgtsvnathftltfrCqgClsweqggtsgsastssnlvlgwAqskkaptn 150
                 ++ +++++sP+ +++++                                                s+  +t+
  KKY17562.1 206 STSTSSSTSPSSISSTS------------------------------------------------SSGGVTS 229
                 33333333333332222................................................2222221 PP

>> DUF2427  Domain of unknown function (DUF2427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   5.1   5.3e-07    0.0019       9     102 ..     232     332 ..     227     335 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.3e-07
     DUF2427   9 ttdephksalwvHiilmtlalvvvyPvalvLsla........ksrwylpvqivnlvlavlglllghiykgstPelypnniyaklswill.illavqvvl 98 
                  ++++ +++ ++H+++mtla++v +P++  L+ +           ++ p+qi++l+l++ gl lg+   +++ +      ++ ++ +++  ++++q v+
  KKY17562.1 232 SSSTSTTQLKTAHAAVMTLAFLVFFPLGATLAWIpipflsnkIIYLHAPIQIISLLLVISGLGLGIKLAKNINDI--DGYHQIIGYVVVaSMVLIQPVF 328
                 455566777789****************99876522222110345789************************888..77899998776515678999** PP

     DUF2427  99 avll 102
                 ++l+
  KKY17562.1 329 GILQ 332
                 *986 PP

>> DOMON  DOMON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   9.3e-07    0.0033      18      98 ..      53     130 ..      43     155 .. 0.85
   2 ?   -2.8   0.5         2   7.1e+03      62      94 ..     199     229 ..     185     242 .. 0.51

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 9.3e-07
       DOMON  18 iefelsgkvntngyvaiGfsddgkMsnadvvvgwvd.ngrvyvqdyystggkgapriddtgsqditllsgs.eengvttlkfr 98 
                 i+++++++++  +++++G ++  +Ms+a++ +++   + ++++  +   +g+++p+ ++     it+l+gs ++ng++t  fr
  KKY17562.1  53 IYISMQCPSDSVEWCGLGQGS--QMSGANIFIMYAAsSSNITISPRL-GTGHTMPMFNSD--AQITVLEGSgISNGIMTGNFR 130
                 899999999999******998..5************66*********.999**9****77..888888866489999988876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2
       DOMON  62 yystggkgapriddtgsqditllsgseengvtt 94 
                 + +++++++ ++ +t  +  + +s+s+++gvt+
  KKY17562.1 199 SSTSNSSSTSTSSST--SPSSISSTSSSGGVTS 229
                 442333332222222..3333344445555554 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  13.3    0.0001      0.37     218     346 ..      92     237 ..      34     254 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0001
        SOG2 218 fsaqdveqGaaltplrsd.qipfnl...........................srsrrssssgnsaspaangaqsetsersasssgvqssasstPlgegs 288
                   ++++  G  +++++sd qi++ l                           + +++ss +   +++   + ++++se+ ++++g              
  KKY17562.1  92 TISPRLGTGHTMPMFNSDaQITV-LegsgisngimtgnfrcdscsswsggsmDLTSSSSDWIYAVKNGDAITSTDQSESISEHDG-------------- 175
                 44467788999999999999987.4599999999998877777666666533233333333333333333333333333223222.............. PP

        SOG2 289 tsppgalsrqslsttgststltsssksrsssrsntnasastprslattpa......ppasaesf 346
                     +a+   + +t gs+s+++ ss+s+s+s+s++ +s++ p+s+++t++      +++s++s+
  KKY17562.1 176 -HG-SATLDLTEATGGSSSNPFISSSSTSNSSSTSTSSSTSPSSISSTSSsggvtsQSSSSTST 237
                 .21.222222233333333333333333333333223333333333333211111111111111 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   8.0   0.00099       3.5     314     386 ..     163     235 ..     137     262 .. 0.39

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00099
        Apt1 314 seeddesdeesessssss.........ssssssassssssssrssslelrlkptsstssssssessssssskkrsseessle 386
                 s +++es +e++  +s +         s      ss+   ss+s+s++++   ts++ss+s+s+ ss+sss   +s++ss +
  KKY17562.1 163 STDQSESISEHDGHGSATldlteatggS------SSNPFISSSSTSNSSS---TSTSSSTSPSSISSTSSSGGVTSQSSSST 235
                 2223333333333222224543332221......2222222222222222...12222222222222222111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1165  (0.0649785); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 2820.21
//
Query:       KKY17563.1  [L=326]
Description: putative sister chromatid cohesion protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-06   28.0   0.1    1.8e-06   27.5   0.1    1.2  1  Dcc1      Sister chromatid cohesion protein Dcc1


Domain annotation for each model (and alignments):
>> Dcc1  Sister chromatid cohesion protein Dcc1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.1     1e-10   1.8e-06      68     281 ..      10     248 ..       2     286 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1e-10
                 ..XXSXXEEEEEEEEEEEEE.EEEEE--S-.--TT-...-EE-S-SSTHHHHH...TSS-S-SHHHHHHTSSS-HHHHHHHHHHCTEE.EETTEEEEE- CS
        Dcc1  68 eeeksaqkkslvvsataseylElkeiaprldklkelLrepeYdgeeeeeeedaksaeekekytleeLlenvqaSeaElkkaLkelgal.eidGrlrlls 165
                 +  ++ +++sl++ a++ ++lEl+ +  + +++ + L  p+++ +   ++  +k        t +e l +++  ++ l++a  +l a+ +  +++ ++ 
  KKY17563.1  10 KGPENVTSSSLTAIAQVDSILELHAVSYSAEEILAKLL-PVWSVDTTASSVVSK-------QTRKEVLAEIPLPDRQLDTACLNLLAFdNQSDDAAIVR 100
                 33334479999***************987775554443.899999988775543.......699************************87788888888 PP

                 HHHHH..HHHHHHHHHHHHTT--TB-H..HHHHHHHHTTST.........--HHHHHHHHHHHEE......ES---...........EEE-HHHHHHHH CS
        Dcc1 166 psyls..elLelvlallveesldldavpeeelvealaedge.........vpeevieqvlkvygkkesskekeeea...........lkldekkvcral 242
                 p+  s  ++ + ++++++e+s+dl+++   +++ ++   ++              +++ +  y +    + +   +           + l+++k +r+ 
  KKY17563.1 101 PDAKSalKAWSDIVTIAIESSIDLSSFFYPSTLLNIPGPQQphphsaaliN----LRSAILQYLTYVPPSDA---SdsllpinldekVWLQKDKLLRWT 192
                 876542278899************888888888888777767554432221....22222233333322222...12357889999999********** PP

                 HHHHHHHHSS.................S-EEHHHHHHHHHHTS-TTSS----GGGG CS
        Dcc1 243 aeqlLkktka.................ekieleeFlekWkssvPegleseldlelL 281
                 ++ lL + ++                   i++++F  +W +++Pe ++++++l+lL
  KKY17563.1 193 GITLLASLRSrkdyepeenltfgdiknDLIAIDDFTTQWLDLLPEAWRQDVQLSLL 248
                 ********99999999999999999999999*****************99***999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 2101.10
//
Query:       KKY17564.1  [L=511]
Description: putative actin family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-94  317.0   0.0    1.3e-93  313.8   0.0    1.9  1  Actin     Actin
  ------ inclusion threshold ------
      0.014   14.2   0.0       0.03   13.2   0.0    1.5  1  MreB_Mbl  MreB/Mbl protein


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.8   0.0   1.5e-97   1.3e-93       4     406 ..      16     507 ..      14     508 .. 0.93

  Alignments for each domain:
  == domain 1  score: 313.8 bits;  conditional E-value: 1.5e-97
       Actin   4 vsavVlDnGssttraGyagedaPk........avipslvgkprgrkveaklyvgde..altkrpelevrspvedGvvedwdaveelwehvlkeelkvdp 92 
                 ++++++DnG+++++aG+++++a +        +vip++++++r+r    + y++++  ++++++   +r+pve+G ++ w+a++++w+h++++e+++ +
  KKY17564.1  16 SNTLIIDNGAYLLKAGFSSDTANTdadlltncHVIPNALARTRDR----RTYIASQleNISDWTDAIFRRPVEKGQIVSWEAQKAVWDHTFFDEKTAAK 110
                 689*******************999*******************9....8999999888889********************************99995 PP

       Actin  93 .......eehpllltepplnppkqrekalEivfEkfkvpalylaksavlsafasgks..................tglvvDsGasvtsvvpVldGyvLk 166
                         +++l+ltepp++ p+ +++a+Ei++E++++ a++++  + l+a++++                    + lvvDsG+s+t+++p+++G +++
  KKY17564.1 111 dlfvkdaGDTTLVLTEPPNTLPSLQKNADEIIMEEWGFGAYSRVIGPSLNAYNDIHPsmgdpvsgtpppdsgpveCLLVVDSGYSHTTITPIYKGRPIQ 209
                 56666669******************************************************************************************* PP

       Actin 167 kairrsdlgGkaLteqlkellssknvevtprylikkkkvveaessaekeelekltesyktleeeevleeiKesvcevsedpeg.........deekss. 255
                 +airr+d+gGk+Lt+ lke++s++                                +y+  ++++++++iKe++c+vs++++          +    s 
  KKY17564.1 210 RAIRRLDFGGKHLTNMLKEIVSTR--------------------------------HYDLHQDTHLVNDIKERTCFVSQNFNSdleatwkgnS----Sr 272
                 ***********************8................................9************************998886665551....04 PP

       Actin 256 ...........................................sspeksYeLPDg........................................seik 271
                                                            +s   +Y+LPDg                                        + ++
  KKY17564.1 273 skksrnptrlptppetstdstdndamhmdpptntpelpsssspTSLFIDYVLPDGlhikqgftrphdpsqqatstnpkkrphspsptpstthhpeTFMT 371
                 5556778899999999999999999***9999999888874444444459*******************************************98899* PP

       Actin 272 lgeeRfkvpEiLFdpsligsesaleeekskllgiselivaainacdvdlrpeLlanivvtGGnsllpglteRlekelaqlaskgvkvkiiapeeerkys 370
                 l++eRf+vpEiLF+ps++g +++   +++ l gi+eli++++  +++ +++++l+ni+v+GGn+ +pg+ +Rl++e++ l++++ +v++++   ++  +
  KKY17564.1 372 LSNERFTVPEILFTPSDLGLTPS---TPTPLAGIPELIHQSLTTLPPAIQATMLSNILVVGGNANIPGFVSRLKTEVRSLSHSSWNVRVAKMD-DPLKA 466
                 ********************988...56899*************************************************************9.***** PP

       Actin 371 aWiGGSiLAslg.....tfqqlwvskqEYeEqGssvverkc 406
                 +W+GG+ +A+ +      f+ql+v+k+EY E G+ +v rk+
  KKY17564.1 467 TWLGGARMACSMrknktAFKQLVVTKEEYAEFGAGWVARKF 507
                 *********7643333479*********************8 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.3e-06      0.03     248     324 ..     397     480 ..     391     483 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.3e-06
                 HHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH........SS-EEE-SSTTTHHHHHHHHTTC-HHH CS
    MreB_Mbl 248 epvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseet........glpvkvaedpltcvakGtgkvleklkk 324
                 +p++ i e +++ L + pp + a ++ + i+++GG a + g+ + l+ e+        +++v   +dpl++   G ++++ +++k
  KKY17564.1 397 TPLAGIPELIHQSLTTLPPAIQATMLSN-ILVVGGNANIPGFVSRLKTEVrslshsswNVRVAKMDDPLKATWLGGARMACSMRK 480
                 5788999****************99887.7777*********9999988733333322467777789999999998888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.52
# Mc/sec: 2967.50
//
Query:       KKY17565.1  [L=481]
Description: hypothetical protein UCRPC4_g05466 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.011   15.7   0.8      0.011   15.7   0.8    2.4  3  APC_N_CC       Coiled-coil N-terminus of APC, dimerisation do
       0.12   11.6   3.4       0.24   10.6   3.4    1.4  1  MPS2           Monopolar spindle protein 2
        1.1    9.6   4.4        2.6    8.4   0.6    3.1  3  TSC22          TSC-22/dip/bun family
        6.1    7.0  12.0       0.98    9.6   4.6    3.0  2  bZIP_1         bZIP transcription factor


Domain annotation for each model (and alignments):
>> APC_N_CC  Coiled-coil N-terminus of APC, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2      0.62   2.8e+03       8      18 ..     105     115 ..     101     119 .. 0.82
   2 ?   15.7   0.8   2.6e-06     0.011       4      38 ..     171     205 ..     169     206 .. 0.93
   3 ?   -4.4   0.4         4   1.8e+04      25      30 ..     369     374 ..     369     379 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.62
    APC_N_CC   8 rQvEaLkkent 18 
                 r vE L++en 
  KKY17565.1 105 REVEVLQAENR 115
                 679*****995 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 2.6e-06
    APC_N_CC   4 dQLvrQvEaLkkenthlrrELedNSshLskLEtet 38 
                 dQL    E L+ en+ l+r +++N  h++ L   t
  KKY17565.1 171 DQLQDRTEILQEENSLLKRRIRENREHMTMLKAQT 205
                 9***************************9997665 PP

  == domain 3  score: -4.4 bits;  conditional E-value: 4
    APC_N_CC  25 edNSsh 30 
                 +dNSs 
  KKY17565.1 369 KDNSSD 374
                 699996 PP

>> MPS2  Monopolar spindle protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.4   5.4e-05      0.24      87     220 ..      57     196 ..      47     214 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.4e-05
        MPS2  87 fkevvekifedvDgieaekisslelkeevkrl...vvlssknsekdslstprkkilldll..k..kqesPeklr..rsnrklkaLevrveslkdELeak 176
                 ++++v++ ++   ++ +  is+ + k +   l      s+++ + + ++t r++++l+        +++P++ +  + +     L +r  +l+ EL   
  KKY17565.1  57 LRSMVKELMG---AVREARISAAHFKLQHSLLameSYESAQRAQIEHQMTKREVEVLQAEnrSrqSSSQPQRAPvaSPQSAPEPLLTRCRELELELGIL 152
                 5555555544...45667777777777766554433445566666777777777776543112002334544431133445567888999999999999 PP

        MPS2 177 devlrekeRelleLkkrlseykekYellqrefslykarrveksq 220
                 d+ lr   R + + + r ++++++ e+lq+e sl k r  e+++
  KKY17565.1 153 DRRLRRAKRLIEDERDRGDQLQDRTEILQEENSLLKRRIRENRE 196
                 99999999988889999999999999999999988766544443 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.18   8.2e+02      19      34 ..      57      72 ..      55      94 .. 0.72
   2 ?   -2.3   0.0       1.3   5.6e+03      15      36 ..     106     113 ..     100     124 .. 0.65
   3 ?    8.4   0.6   0.00057       2.6      24      46 ..     171     193 ..     163     205 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.18
       TSC22 19 LkekIkeLeernsele 34
                L++ +keL+  ++e +
  KKY17565.1 57 LRSMVKELMGAVREAR 72
                7788888887777665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.3
       TSC22  15 eVevLkekIkeLeernseleeE 36 
                 eVevL              + E
  KKY17565.1 106 EVEVL--------------QAE 113
                 55555..............444 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00057
       TSC22  24 keLeernseleeENslLkalasp 46 
                   L++r + l+eENslLk+ + +
  KKY17565.1 171 DQLQDRTEILQEENSLLKRRIRE 193
                 5799**************98854 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.4      0.14   6.4e+02      25      44 ..      97     116 ..      91     122 .. 0.74
   2 ?    9.6   4.6   0.00022      0.98      28      62 ..     170     204 ..     153     205 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  25 qaeieeLerrvkaLekeNks 44 
                 q e +  +r+v++L++eN s
  KKY17565.1  97 QIEHQMTKREVEVLQAENRS 116
                 5555555789*******985 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00022
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  28 ieeLerrvkaLekeNksLkseleelkkevekLksk 62 
                  ++L++r + L++eN+ Lk ++ e ++++  Lk +
  KKY17565.1 170 GDQLQDRTEILQEENSLLKRRIRENREHMTMLKAQ 204
                 579**************************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1518  (0.0846673); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.50
# Mc/sec: 2918.41
//
Query:       KKY17566.1  [L=460]
Description: putative acyltransferase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-20   71.7  28.6    1.3e-19   70.5  27.4    2.1  2  Acyl_transf_3  Acyltransferase family


Domain annotation for each model (and alignments):
>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5  27.4     7e-24   1.3e-19       2     338 ..      11     403 ..      10     406 .. 0.78
   2 ?    0.9   1.2      0.01   1.8e+02      75     112 ..     378     417 ..     363     424 .. 0.64

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 7e-24
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3   2 aylDllRgiAillVvflHaliayspdagrgspiqasqssqi.......aflggfgvplFFllSGffla..........amlyrrrglsklikrRil 80 
                    +++D+lRg+A + Vv+ H++ a++++ +      ++            +f g +gv +F ll+G+++           + ++  ++ sk  +rR++
     KKY17566.1  11 KWIDGLRGFASFTVVCTHISRAFDYGLFLPRNNPDTPARIAqwpfiriIFQGKVGVAIFALLTGYVCGlkplklaragRHREALQTISKSAFRRVP 106
                    7********************99999998776666655444669*********************************999999************* PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3  81 rlliplliwllliillialvaghiqanasanvtlfdet................kglmfllfefpatghlWfLwalfvlylllplllrllrkvrks 160
                    rl++p  + +l+ +l+++++a+   + ++  +  +++                 +++ ++ +   ++ h W L   + + +++++  +++     +
     KKY17566.1 107 RLILPATLAMLISWLMCQFGAYTAASRSDSEWYRYASPvpeptwwlelkrlyfnFWTVWTNGVMEYDDHQWALLPFLKGAMIVFIVSAAMIYSQFK 202
                    ***********************************999***************9999999999********************9999888888888 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......... RF
  Acyl_transf_3 161 hlllllilllllslvfirhelfgpatsvgllplpsvlallfflfGalladaddrd.rnlsrglkislllsllllalillalfgqtdg......... 246
                    ++++++++   l++++ + +     t  +            ++fG++l+d++ +   ++ ++    ++  +   ++il ++f+++           
     KKY17566.1 203 YRMIVYAGY--LAYWWQNPHP---DTETFG---------QQMIFGLFLSDLSQHPpYQKFLANHQKAATRCSIPVIILGFYFVSYPDaspewssws 284
                    888777654..4455555443...333332.........356788888887777523555555555555555555555555555544667788888 PP

                    ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xx RF
  Acyl_transf_3 247 ........gglvasvliqsaslllvslgimllllllfalpsrsafkllrylgkiSygiYliHlpllmllqkllrdw..................gl 316
                            + + a +++  ++ +l +  +++ + ++  l+ + +++ + +lg++S+++YliH+ ll ++  ++                     ++
     KKY17566.1 285 nnlynlsqYIFPADTHTAKRFTALGIDVAAFGIQACHPLKELLSNRFFLWLGRNSFAVYLIHGTLLRTVLAWMLYGitgtpwnpetnpetgeviYH 380
                    88888877555555555665555555555555555556666665666***************9999999999999877777666665555555533 PP

                    x.xxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 317 n.lgevlllvlllvvsvivsvvl 338
                    +    +  + ++lv++v++++v 
     KKY17566.1 381 WlPRRAHGIPFFLVLAVWFCIVY 403
                    35466677778888888888775 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.01
                    xxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3  75 ikrRilrll..iplliwllliillialvaghiqanasanv 112
                    i++ ++r +  ip++++l +++ ++++ a++ +  +++++
     KKY17566.1 378 IYHWLPRRAhgIPFFLVLAVWFCIVYFLAHFWTTYVDHWC 417
                    5555555555566666666666666666666555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 2889.29
//
Query:       KKY17567.1  [L=190]
Description: hypothetical protein UCRPC4_g05468 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.13   12.8   0.1       0.46   11.0   0.1    2.0  1  Cu_amine_oxidN1  Copper amine oxidase N-terminal domain


Domain annotation for each model (and alignments):
>> Cu_amine_oxidN1  Copper amine oxidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   2.6e-05      0.46       7      49 ..      19      61 ..      15     104 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.6e-05
  Cu_amine_oxidN1  7 vPlraiaealGakvewdeetktVtikkgdktiklkigsneatv 49
                     vP++a+    Ga+v+ d+e + Vt+ +  k++   ++++++++
       KKY17567.1 19 VPVEAVLGDTGAEVTQDPEARAVTVADLHKEVPRLPADRSLVL 61
                     9************************998887766555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1511.96
//
Query:       KKY17568.1  [L=612]
Description: putative protein tyrosine phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-59  200.8   0.1    2.6e-30  105.7   0.0    2.3  2  Y_phosphatase   Protein-tyrosine phosphatase
    2.3e-13   50.6   0.0    1.1e-12   48.4   0.0    2.1  2  Rhodanese       Rhodanese-like domain
     0.0015   18.3   0.0     0.0038   17.1   0.0    1.6  1  DSPc            Dual specificity phosphatase, catalytic domai
  ------ inclusion threshold ------
       0.01   15.8   0.0       0.02   14.9   0.0    1.5  1  Y_phosphatase3  Tyrosine phosphatase family


Domain annotation for each model (and alignments):
>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7   0.0   5.8e-34   2.6e-30       3     109 ..     266     367 ..     264     379 .. 0.91
   2 !   92.9   0.0     5e-30   2.2e-26     113     235 .]     417     577 ..     394     577 .. 0.86

  Alignments for each domain:
  == domain 1  score: 105.7 bits;  conditional E-value: 5.8e-34
                    GGSSSTTS-B-CTTEEEB.TTTTTTTTEEEEEEEEECTEEEEEEEEE---GGGHHHHHHHHHHTT--EEEEESBSEETTEESS---S-SSTSSEEE CS
  Y_phosphatase   3 eknRykdilpydksrVkl.kssegpsdYInAnyikgykkekkyIatQgPlkstvedFWrmvwqekvkvivmLtsleekgrekcaqYwpeeeeesle 97 
                    +knRy++i py +srV+l + s+g++dY+nA+++k + ++k+y+atQ+P++ t+ dFWr+vw+++v+vi+mLt + e g+ k ++Yw+     s  
     KKY17568.1 266 NKNRYNNIFPYSHSRVRLqNVSPGDCDYVNASHVKASLTNKHYVATQAPIPATFTDFWRVVWEQDVRVIMMLTAESEGGQVKSHPYWD-----SGD 356
                    79****************667889999*******99989*************************************************.....778 PP

                    ETTEEEEEE.EE CS
  Y_phosphatase  98 ygkikvtlkeke 109
                    yg +k+++  +e
     KKY17568.1 357 YGPLKLKCL-SE 367
                    888888887.33 PP

  == domain 2  score: 92.9 bits;  conditional E-value: 5e-30
                    ESSEEEEEEEEEETTTTE.EEEEEEEEEESSS-SSSSGSCCHHHHHHHHHHHHHH................STTSS-EEEECSSSSHHHHHHHHHH CS
  Y_phosphatase 113 ekeyvlrelevkkkkees.eerevkqlqytnWpdhgvpesaksllklirkveksk................eaksgpvvVhCsaGvgRtgtfvald 191
                       +++r+l++++++      re++q+qyt+Wpd g+p+s+k+ll+li+ + k                   +++ pv+VhCsaG+gRtgtf+++d
     KKY17568.1 417 PPFIIVRHLTLSHSAYPFqPMREITQIQYTSWPDFGAPASPKHLLSLITHADKFVrksiksgdilspsqpmPENQRPVLVHCSAGCGRTGTFCTVD 512
                    456788999999888776446899*************************9999999999***********9899********************** PP

                    HHHHHHHHHSE...EEHHH.....................HHHHHHTTSTTSS-SHHHHHHHHHHHHH CS
  Y_phosphatase 192 illqqleaeee...vdvlq.....................ivkelrkqRpgmvqtleqyiflyevile 235
                     ++++l+++++   +   +                      v+  r+qR +mvq+l q++ +ye +le
     KKY17568.1 513 SVIDMLKRQRKengL---SetnagesddwvqrddidliakSVEDFRSQRLSMVQSLRQFVLCYESVLE 577
                    ********7774441...2344566778888888888888************************9985 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   2.5e-16   1.1e-12       3     106 ..       5     121 ..       3     122 .. 0.91
   2 ?   -1.4   0.0      0.74   3.3e+03      64      78 ..     489     503 ..     468     512 .. 0.78

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 2.5e-16
   Rhodanese   3 kelkellekgkvallDvRppeeYekghIpgAvnv..skdtlsrakkseapllelpeellel....gidnkktvvvycdgggr.aaaa..aallkk...l 89 
                 +e+++ll++++v llD R ++++++++I+gA+n+  + + l+r++++ ++ll++++ ++e+     +++ ++++vy++++++ ++a   ++ lkk    
  KKY17568.1   5 EEVAQLLQRENVLLLDLRVFPQFSASRIRGALNLciPTTLLKRPSFNIQKLLDTFTTDEERkefsRWREASHIIVYDASSSQlKEAIapTHVLKKfvnE 103
                 89************************************************************9*99****************65555776677767779 PP

   Rhodanese  90 Gykn.vsvldGGfkawke 106
                 G++   ++++GGf ++++
  KKY17568.1 104 GWNGhAHIIKGGFLDFSR 121
                 99999********99876 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.74
   Rhodanese  64 dnkktvvvycdgggr 78 
                  n+++v v+c+ g +
  KKY17568.1 489 ENQRPVLVHCSAGCG 503
                 48999*****99876 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   8.4e-07    0.0038      71      92 ..     489     510 ..     483     511 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 8.4e-07
                 HTT-EEEEEESSSSSHHHHHHH CS
        DSPc  71 qkgkkvlVHCqaGisRSatlii 92 
                 ++++ vlVHC aG  R++t+++
  KKY17568.1 489 ENQRPVLVHCSAGCGRTGTFCT 510
                 68999**************996 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   4.4e-06      0.02     121     139 ..     491     510 ..     459     580 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.4e-06
  Y_phosphatase3 121 e.pvlfHCtaGKDRTGvlaa 139
                     + pvl+HC+aG  RTG ++ 
      KKY17568.1 491 QrPVLVHCSAGCGRTGTFCT 510
                     36**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.53
# Mc/sec: 3505.48
//
Query:       KKY17569.1  [L=272]
Description: hypothetical protein UCRPC4_g05470 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.032   14.3   0.6      0.057   13.5   0.6    1.4  1  UPF0370       Uncharacterised protein family (UPF0370)
       0.11   12.5   0.8       0.18   11.8   0.8    1.3  1  phage_tail_N  Prophage tail fibre N-terminal
       0.16   11.9   0.9       0.76    9.7   1.2    1.8  2  PUD1_2        Up-Regulated in long-lived daf-2


Domain annotation for each model (and alignments):
>> UPF0370  Uncharacterised protein family (UPF0370)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.6   9.5e-06     0.057       3      16 ..     250     263 ..     248     269 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.5e-06
     UPF0370   3 WLadYWWvillllv 16 
                 +L++YWW+ill+ v
  KKY17569.1 250 FLQKYWWIILLISV 263
                 799*******9976 PP

>> phage_tail_N  Prophage tail fibre N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.8     3e-05      0.18      92     131 ..     139     178 ..     116     182 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3e-05
  phage_tail_N  92 amteddvrPevlrrleemveevarsasaaarnaadaaqda 131
                   + t  d +P+   rle    e+ar+a aaa++a+ +a++a
    KKY17569.1 139 SKTTPDGKPKSKARLEREAREAAREAKAAAQAASRSAKKA 178
                   5677899************************998776654 PP

>> PUD1_2  Up-Regulated in long-lived daf-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.35   2.1e+03      40      65 ..      36      61 ..      30      65 .. 0.82
   2 ?    9.7   1.2   0.00013      0.76      71     137 ..     133     199 ..     123     202 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.35
                -TT-EEEEEEEEEEEESTT----EEE CS
      PUD1_2 40 kpgekktelmkVeYntGlfttGrDwW 65
                +  ++ ++l +++Y++  ftt    W
  KKY17569.1 36 SDSSNPQPLATISYDPARFTTDLQSW 61
                55667788999*********998888 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00013
                 ....EEEEEEEE-TTS-BS..SE-..EEEEEE.........................EEEETTTTT. CS
      PUD1_2  71 edlkklyetdpenkrgikdalekvasaliegalialatgsallkaaaaavalakvttdalfnsesta 137
                 +++kk+ +t+p+ k + k  le+ a++++ +a++a+++ s ++k+aa ++a+  vtt +++ s sta
  KKY17569.1 133 PGTKKISKTTPDGKPKSKARLEREAREAAREAKAAAQAASRSAKKAASTAAMQPVTTTTVITSTSTA 199
                 788999**************************99998889999999999999999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1139  (0.0635284); expected 358.6 (0.02)
Passed bias filter:                      657  (0.0366445); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.51
# Mc/sec: 1605.82
//
Query:       KKY17570.1  [L=627]
Description: putative arylsulfatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.7e-45  153.4   1.0    7.7e-44  150.3   1.0    2.0  1  Sulfatase     Sulfatase
    1.8e-05   24.5   1.8    0.00026   20.7   1.9    2.2  1  Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosp
  ------ inclusion threshold ------
      0.061   13.6   0.0       0.17   12.2   0.0    1.7  1  DUF4976       Domain of unknown function (DUF4976)
      0.082   11.5   0.0        1.9    7.0   0.0    2.1  2  DUF229        Protein of unknown function (DUF229)


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.3   1.0   1.7e-47   7.7e-44       1     309 []      25     371 ..      25     371 .. 0.79

  Alignments for each domain:
  == domain 1  score: 150.3 bits;  conditional E-value: 1.7e-47
                 EEEEEEEESSE-TTGSGGGTTTSCSSHHH.HHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTT.....HHCTTTS-HHHHHHHHTT CS
   Sulfatase   1 pnvvliladdlgagdlglyggktattpnl.drlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgg.....gglpqteatLpellkeaG 93 
                 p++v+il+dd+   d+   +    ++++l + l++eg+ + ++y+ ++lc+p+r ++ltg+ +hn+ v+++++++g        + + ++Lp +l+eaG
  KKY17570.1  25 PDIVFILTDDQ---DMRMHSLD--HMQKLqSLLMDEGTSYIRHYAPTALCCPARVSILTGLHAHNHLVTDVSGPNGgwhqvLAGGFNDNYLPIWLQEAG 118
                 79*********...66666653..3788845556**************************************99999998766678999********** PP

                 -EEEEEEES-SCCSGGGSHHCCTTTSEEEETSSSCHHTCCCCCCCCCECTCCC............TTTTCSHHHHHHHHHHHHHHCCCTSSEEEEEEE- CS
   Sulfatase  94 Yntaaigkwhlgwssrqsvyknrgfdrflgfptgsaalkdpekseyngevlrv............ppeggysddrlldealefllarndkpfflylatl 180
                 Y+t++ gk  +g++    v k         ++t ++ l +++ ++yng+ +++               ++y +d+++++  ++l+++       +  + 
  KKY17570.1 119 YRTYYTGKLYNGMHTD-LVEK-----MTARGWTKADLLVGQNVYQYNGPPFQNiegdwtnpnkvhVFHNEYTTDKVANYSYGYLRDA-------INQVG 204
                 ********99998822.2333.....2444455555566666666666555556666666666665557899999999999998332.......23333 PP

                 TTSSSTCTCGGHTCCGSTTTTCCCCCCH...........................................HHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
   Sulfatase 181 apHappeapdeyakkyatffddgseaar...........................................qlleaylnsveyvDdligrvlaaLeeng 236
                  + +pp   ++y ++  + + +  +  +                                           ++++++  ++ +vDd++++v+  L+++g
  KKY17570.1 205 KNTGPPIPAKKYKGTRPDAKIPRAD--NfnpshsdlnnhfqrtwlkfkqrsgvnivwtleklrdnqvekldHHYQCRTEALLSVDDMVEEVVSILDKAG 301
                 3333333344444443333333333..133445555567777888888899999999999999999999*9**************************** PP

                 TGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHCEEECSEEEGGGHHHHHHHHTTE CS
   Sulfatase 237 lldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekaprvseelvshiDlfptildlagi 309
                  l+nt++++tSD+g +l  + ++l +gk+  a e++++vPl++++pg  + r+ + ++ h+Dl+ptil+ agi
  KKY17570.1 302 RLNNTYIIYTSDNGFHL--GHHRLGAGKR-YAFEEDINVPLIIRGPGVPKGRTTDIVSAHVDLAPTILHMAGI 371
                 *****************..88********.*****************************************97 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   1.9   5.9e-08   0.00026      20     235 ..      44     317 ..      33     339 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 5.9e-08
                   TSHHHHH.HHHHSEEESEEE-SSS-SHHHHHHHHHHSS-HHHHS--SSSEEETTTTEEEEEETTTTGG............................. CS
  Phosphodiest  20 llpnlaa.LakegvsapnlrpvfPtlTfpnhaslvTGlyPgeHGivgNtfydrktgeyvvfvtededa............................. 86 
                   ++  l++ L++eg+s+   +    +l +p+ +s++TGl+  +H +++  +  + +g   v   +   +                             
    KKY17570.1  44 HMQKLQSlLMDEGTSYI-RHYAPTALCCPARVSILTGLHAHNHLVTD--VSGPNGGWHQVLAGGF--Ndnylpiwlqeagyrtyytgklyngmhtdl 135
                   45555442578***999.555556789********************..7777777643333333..134774444444444444433333333333 PP

                   ......GGGCTT....S-HHHHHHHTH................TTCEEEESETTTTSEBTTCT.SC........TBHHSBTCT.CSTTS........ CS
  Phosphodiest  87 ......prwwqg....epiwdtaakar................glkaaalfwpgsevdystyyylvs.......etppryleddfnakv........ 142
                         +    g    + ++  ++ ++                 +++    +++ +v+  +y+yl         +t p+ ++++++ ++        
    KKY17570.1 136 vekmtaR----GwtkaDLLVGQNVYQYngppfqniegdwtnpnKVHVFHNEYTTDKVANYSYGYLRDainqvgkNTGPPIPAKKYKGTRpdakipra 228
                   3333321....02222334444444444444444444444432222222233555555555665555888888888888888888888899999999 PP

                   ....CHHHHHHHHHHHHHHHCHTHSHHHHHCT...SSESEEEEEECCCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES- CS
  Phosphodiest 143 ....pledkvdkavlqtwldaafakvvlekel...ekpdlllvyleetDtvgHkfGpdspevedalrrvDkaigdLlealderglsaetniilvSDH 232
                       p ++++++ +++twl+   +       +     + l  +  +++ +  H++       ++al +vD+++++ ++ ld+ g  ++t ii +SD 
    KKY17570.1 229 dnfnPSHSDLNNHFQRTWLKFKQR-------SgvnIVWTLEKLRDNQVEKLDHHY----QCRTEALLSVDDMVEEVVSILDKAGRLNNTYIIYTSDN 314
                   999877777777799999884443.......223367788888889999999999....46889*******************9999********** PP

                   --E CS
  Phosphodiest 233 Gma 235
                   G+ 
    KKY17570.1 315 GFH 317
                   *96 PP

>> DUF4976  Domain of unknown function (DUF4976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.8e-05      0.17      49      78 ..     433     463 ..     410     470 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.8e-05
     DUF4976  49 ryklihfyk.didewelyDlkkDpkelknly 78 
                  y ++  ++ + +++elyD+ kDp +++nl 
  KKY17570.1 433 SYDIMYSVQcQYNSHELYDMSKDPVQMRNLH 463
                 555554333267899**************96 PP

>> DUF229  Protein of unknown function (DUF229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.014        62     121     221 ..      19     123 ..      10     129 .. 0.83
   2 ?    7.0   0.0   0.00042       1.9     287     350 ..     233     322 ..     225     344 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.014
      DUF229 121 ekekkkysV.lilglDSlSrmnfaRslprtveflkklghielqgynkVgdnsfpNlvalLtGk......ifdekeleadwtdtekkvslDklnfiWkeF 212
                 +k+ k +++ +il+ D   rm+   +++++ + l + g  ++  y   +    p+ v +LtG       + d +  +  w++    ++ D++  iW   
  KKY17570.1  19 QKDNKPPDIvFILTDDQDMRMHSLDHMQKLQSLLMDEGTSYIRHYAPTAL-CCPARVSILTGLhahnhlVTDVSGPNGGWHQVLAGGFNDNYLPIW--L 114
                 5677888861455556667999999***********9*******999987.78999******999999755555566789999999**********..6 PP

      DUF229 213 kkkGYeTlf 221
                 +++GY+T +
  KKY17570.1 115 QEAGYRTYY 123
                 899***998 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00042
      DUF229 287 erysnsr.lfgffwsnslshdkfnlleal.........................DedllkylkklekkgllentlvlllsDHGlrfgklr 350
                 + +s+ + +f+ +w +  + + +n++++l                         D+ + ++ + l+k g l+nt ++  sD G   g++r
  KKY17570.1 233 PSHSDLNnHFQRTWLKFKQRSGVNIVWTLeklrdnqvekldhhyqcrteallsvDDMVEEVVSILDKAGRLNNTYIIYTSDNGFHLGHHR 322
                 555555558888888888888888888888888888888888888888888999*****************************8888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 4101.19
//
Query:       KKY17571.1  [L=583]
Description: putative fggy-family carbohydrate kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-50  169.9   0.1    9.2e-50  169.1   0.1    1.4  1  FGGY_C          FGGY family of carbohydrate kinases, C-termin
    5.4e-24   85.1   0.2    6.9e-23   81.5   0.2    2.4  1  FGGY_N          FGGY family of carbohydrate kinases, N-termin
     0.0096   15.4   0.1      0.051   13.1   0.0    2.0  2  BcrAD_BadFG     BadF/BadG/BcrA/BcrD ATPase family
  ------ inclusion threshold ------
      0.082   12.8   0.4        1.8    8.4   0.1    2.3  2  DEDD_Tnp_IS110  Transposase


Domain annotation for each model (and alignments):
>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.1   0.1     2e-53   9.2e-50       2     197 ..     305     515 ..     304     516 .. 0.88

  Alignments for each domain:
  == domain 1  score: 169.1 bits;  conditional E-value: 2e-53
      FGGY_C   2 kvslGTssflllvgtkpvisehglltpvagedgkpeyalegsiavagslvawlldnl.....glreeirdagev............eeslaelaaaeav 83 
                 ++++GTs+++l+++++pv +++g+++p+++++ ++++++eg+++++g+l+++ l+++     +    ++ a+              +++  + +a + +
  KKY17571.1 305 AAVAGTSTCHLVMSPEPV-FVNGVWGPYRDSIIPGFWMAEGGQSATGELLKHTLETHpaynsA----MSMAESYnaniydylnehlRDLQVRDNAPSIS 398
                 689***************.**************************************855331....33333334477667765554444444555555 PP

      FGGY_C  84 adaggvvfvpafsglrapywdpdargtitglssstt...lahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVer 179
                    ++++f+ ++ g+r+p++dp++ g+++gl+s+++   la  ++A++e++alq+r+i+ +++++ g+++++++++G++++n++lm+l+A ++ +pV +
  KKY17571.1 399 YLGRHFFFYGDLFGNRSPIADPSMTGSVIGLNSDKSvdgLAIYYYATMEFIALQTRQIITTMNES-GHKISSIFMSGSQCQNKVLMHLIATACDMPVLI 496
                 555***********************************************************999.********************************* PP

      FGGY_C 180 pkt.aeatalGaAilAava 197
                 p++ ++a+++GaA+l+a a
  KKY17571.1 497 PRYvHAAVVHGAAMLGAKA 515
                 ****************988 PP

>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.2   1.6e-26   6.9e-23       2     245 .]       4     275 ..       3     275 .. 0.86

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 1.6e-26
                 EEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTTEES........ CS
      FGGY_N   2 ilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDkndkpL........ 92 
                 ++g+D+Gt s +a +++ kg++v+ a++++ l +p++g+ eq+   iw +++++++ +++q++i+++ i++Ig+ +    +v+    d+p+        
  KKY17571.1   4 YIGIDVGTGSARACIINSKGDIVGLASENIGLWQPEQGYYEQSTTDIWRCICQSVQRAISQHNIDPNTIRGIGFDATCSLAVFTHDTDEPVsvtgpkfg 102
                 89***************************************************************************99999999999*9955555444 PP

                 ....SEEE-TT--TTHHHHHHHHHTTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT.--EEEHHHHCTTTSE....E CS
      FGGY_N  93 ....ynailwkdrrtaeiveklkeegnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtg.qfvtdvtnasesmlf....n 182
                      n++lw d+r  e+ +k++    +++l    g ++s    + k+ Wlk+n p+ +    kf    d L++  tg ++ +  + + + +++    +
  KKY17571.1 103 dfndHNVVLWLDHRPVEETKKIND--TKHNLLRYVGGTMSIEMEIPKVLWLKNNMPKELFDRCKFYDLADALTHLATGnEKRSFCSVVCKQGYVpvgvD 199
                 444449****************99..89999999***********************99999999999**********855555566666666511115 PP

                 TTTTEE-HHHHHHTT--GG...GS-EE..........E-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 183 ikklewdeellailgipee...lLPkl..........vesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                  + + w+e  l+ +g++      + ++          ++++e +g+l +++a +lGl +g+ v +g  D  a+ +G
  KKY17571.1 200 GSVKGWQEDFLKEIGLEDLtkdNFARMggvdgvngdyLSAGELVGTLSEKAASELGLPAGIAVGSGVIDAYAGWIG 275
                 67789*******999875445566555333444444479******************************9999887 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.1e-05     0.051       1      65 [.       5      75 ..       5      92 .. 0.85
   2 ?   -0.3   0.0      0.14   6.1e+02     202     266 ..     449     511 ..     444     512 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.1e-05
                 EEEEE-SSEEEEEEEETTTEEEEEEEE--......TTS-HHH.........HHHHHHHHHHT--GGGECEE CS
  BcrAD_BadFG  1 vGiDgGsTttkavlmdekgevlgrgitns......anlesvrfeaaekvleealtealerageeeadieet 65
                 +GiD+G+++ +a++++ kg+++g +  n       + + +  +++ ++ + + ++ a+++   ++++i+ +
   KKY17571.1  5 IGIDVGTGSARACIINSKGDIVGLASENIglwqpeQGYYEQSTTDIWRCICQSVQRAISQHNIDPNTIRGI 75
                 7*********************9998887788888556667788899999999999999999998888876 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.14
                  HHHHHHHHHHTT---SS....EEEESGGGG-HHHHHHH.....HHHH-S-EE--GGGGGHHHHHHHHH CS
  BcrAD_BadFG 202 ialrvialisrsggvtde...vtltGGvakneaavkelrklvkenygevkininpdsiytgalGAalf 266
                  ial+  ++i + ++ + +   +++ G+  +n+ ++      +     ++++ i+++   + + GAa++
   KKY17571.1 449 IALQTRQIITTMNESGHKissIFMSGSQCQNKVLMHL----I-ATACDMPVLIPRYVHAAVVHGAAML 511
                  6677777777777666666779*********555444....4.5556668999999999999999987 PP

>> DEDD_Tnp_IS110  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1   0.00041       1.8       1      22 [.       5      26 ..       5      34 .. 0.90
   2 ?    2.0   0.0     0.038   1.7e+02      35      70 ..     350     385 ..     342     394 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00041
  DEDD_Tnp_IS110  1 vGiDvakdkhdacvidaegkvl 22
                    +GiDv+ ++  ac+i+++g+++
      KKY17571.1  5 IGIDVGTGSARACIINSKGDIV 26
                    7******************987 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.038
  DEDD_Tnp_IS110  35 ealleklaakagevlvvveatghygallvaflleag 70 
                      +ll++ ++++   + ++ + ++y a+++ +l e+ 
      KKY17571.1 350 GELLKHTLETHPAYNSAMSMAESYNANIYDYLNEHL 385
                     5788888999999*******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3935.45
//
Query:       KKY17572.1  [L=187]
Description: putative nadh-ubiquinone oxidoreductase 21 kda subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-26   91.9   0.1    2.7e-26   91.4   0.1    1.2  1  NADH_u_ox_C      C-terminal of NADH-ubiquinone oxidoreductase
    1.5e-22   80.0   0.2    2.6e-22   79.3   0.2    1.4  1  NADH-u_ox-rdase  NADH-ubiquinone oxidoreductase complex I, 21


Domain annotation for each model (and alignments):
>> NADH_u_ox_C  C-terminal of NADH-ubiquinone oxidoreductase 21 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.1     3e-30   2.7e-26       1      79 [.     110     186 ..     110     187 .] 0.97

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 3e-30
  NADH_u_ox_C   1 ryeikkllsqgklpYkenesvLddrlkdvanRnsqysalllailPWFnlayhpyhgvdlkkYYenregeeewgfklkpl 79 
                  ++e+  ++++g+++Y  ++s L +++++va+Rns+ysa++ +i+PW n+++h++hgvd++kYY+++e e e ++++k+l
   KKY17572.1 110 MKEMVAKVKKGEPLY--GHSRLSPYMQGVAARNSRYSATFAHIIPWMNFVNHNQHGVDTAKYYQQAERELEAERTGKAL 186
                  57999**********..**********************************************************9987 PP

>> NADH-u_ox-rdase  NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.2   2.9e-26   2.6e-22       2      82 .]      16     101 ..      15     101 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 2.9e-26
  NADH-u_ox-rdase   2 paYpvIdsdPsfsrvlrnfrpsDYvkaaaitaafplallaleklsPsvagka.....mtlagligflggfllayqnssqRLkGfrE 82 
                      ++Yp+Id+dP+  r+ r++r++DY+ka+ + a++p++++++ek+sPs agk+     ++l+++ g + g++++ q+ss R++G+ E
       KKY17572.1  16 TDYPIIDTDPHAFRCYRYARKEDYAKAVSLGAIAPVGMYTMEKYSPSFAGKGgfppiFRLSCAAGAIFGAIYVWQKSSLRFYGWEE 101
                      79**********************************************9999********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.31s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1274.19
//
Query:       KKY17573.1  [L=468]
Description: putative replication fork protection component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-30  103.1   0.2    1.1e-29  102.3   0.2    1.4  1  Swi3      Replication Fork Protection Component Swi3
  ------ inclusion threshold ------
        1.3    9.4   2.7        3.6    7.9   1.4    2.2  2  NifQ      NifQ


Domain annotation for each model (and alignments):
>> Swi3  Replication Fork Protection Component Swi3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.2   1.2e-33   1.1e-29       1      82 [.      77     161 ..      77     162 .. 0.94

  Alignments for each domain:
  == domain 1  score: 102.3 bits;  conditional E-value: 1.2e-33
        Swi3   1 kldeerLlsekGlpaLrknf.kkl..kfkgkgheaedlkkllqfyqlWahrLfPkakfkdflekveklgkkkevktyrkelreee 82 
                 klde+rLls+ Glp+L+ +f  kl  k+kgkghe++d +kllqfyqlW++ L+P+akf d l+++ek+g++k+++ +rk +++e 
  KKY17573.1  77 KLDEARLLSQAGLPKLKASFrSKLapKLKGKGHEFSDAAKLLQFYQLWLDALYPRAKFADGLAMIEKVGHSKRMQVMRKAWIDEG 161
                 8*******************9555236799****************************************************986 PP

>> NifQ  NifQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1     0.093   8.4e+02      44      77 ..     252     285 ..     231     295 .. 0.68
   2 ?    7.9   1.4    0.0004       3.6      23      78 ..     296     356 ..     273     368 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.093
        NifQ  44 aaalaeeleeeraeeeedlralLlehaseeaeee 77 
                 ++ + ++ ++ ++e e+dl alL+e+ +++++++
  KKY17573.1 252 SKPSVRQPANDDSEGEDDLDALLAEEDARRKKSQ 285
                 344555666677788999****999988877664 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0004
        NifQ  23 saaelaeLlerlfpgaeaal.....eaaalaeeleeeraeeeedlralLlehaseeaeeer 78 
                 +++++ +Ll+++ ++ ++++     +++++a++ ++e+++e +dl alL+eh +++++ ++
  KKY17573.1 296 DEDDVDALLAEHDARRKETApitppTVTKKAATPPAEEEDELDDLDALLAEHDAAQSQDNT 356
                 46789999999998888776888887888888899999999***********999988755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 2872.66
//
Query:       KKY17574.1  [L=553]
Description: putative ran exchange factor prp20 pim1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-56  189.3  15.7    5.8e-10   39.6   0.1    8.0  8  RCC1             Regulator of chromosome condensation (RCC1) 
    2.4e-36  122.8  32.8      8e-08   31.9   1.1    6.8  7  RCC1_2           Regulator of chromosome condensation (RCC1) 
     0.0072   16.1   0.0        7.5    6.2   0.0    4.5  5  Hira             TUP1-like enhancer of split
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.28   11.0   0.0    1.5  1  Exo_endo_phos_2  Endonuclease-reverse transcriptase


Domain annotation for each model (and alignments):
>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.85   3.8e+03      24      47 ..      20      43 ..      11      45 .. 0.81
   2 !   27.1   0.0   1.1e-09   4.8e-06       3      50 .]     123     175 ..     123     175 .. 0.88
   3 !   27.9   0.0   5.8e-10   2.6e-06       1      50 []     178     255 ..     178     255 .. 0.74
   4 !   36.1   0.1   1.7e-12   7.6e-09       1      50 []     258     308 ..     258     308 .. 0.90
   5 !   39.6   0.1   1.3e-13   5.8e-10       1      50 []     311     362 ..     311     362 .. 0.86
   6 !   27.7   0.0   7.2e-10   3.2e-06       1      50 []     365     419 ..     365     419 .. 0.87
   7 !   19.6   0.1   2.3e-07     0.001       2      50 .]     423     483 ..     422     483 .. 0.73
   8 !   15.7   0.2   3.8e-06     0.017       1      49 [.     486     536 ..     486     537 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.85
                EEEEE-GGGTTS-EEEEEEETTEE CS
        RCC1 24 lvPtkveglsgnrvvkvacGddht 47
                ++P  v+ ++++++  ++ G  ht
  KKY17574.1 20 SKPAAVKKSTSRKAEPITNGVAHT 43
                569999999999999999999998 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 1.1e-09
                 EEEEEE--GGGTTSSSS-...--EEEEEE-GGGTTS..-EEEEEEETTEEEEE CS
        RCC1   3 rVysWGrndyGqLGlgtt...esvlvPtkveglsgn..rvvkvacGddhtval 50 
                 +Vy +G++++  LGlg+     +v  P++ + l+++   vv  acG+ ht+al
  KKY17574.1 123 DVYVFGQGENAELGLGQGsgvSEVKRPRLNPKLKADevGVVELACGGMHTAAL 175
                 59*************88867533355********99***************97 PP

  == domain 3  score: 27.9 bits;  conditional E-value: 5.8e-10
                 TTEEEEEE--GGGTTSS...............SS---E..............EEEEE-...GGGTTS-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWGrndyGqLGl...............gttesv..............lvPtkv...eglsgnrvvkvacGddhtval 50 
                 d ++y+WG nd+G LG+                                    +Pt +   ++++g+ +++ a+Gd+ t+al
  KKY17574.1 178 DNKIYTWGVNDQGALGRdtawegglkdiddneS----DsseddpgndlnpyeATPTAIpssSFPEGTIFTHLAAGDSTTFAL 255
                 5689*************8888887766654430....133445555555455559999776777777*************97 PP

  == domain 4  score: 36.1 bits;  conditional E-value: 1.7e-12
                 TTEEEEEE..--GGGTTSSSS-..--EEEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWG..rndyGqLGlgtt..esvlvPtkveglsgnrvvkvacGddhtval 50 
                 dG Vy+WG  r+++G +G   +  + + +P +++ l+  ++vkv+cGd+h+val
  KKY17574.1 258 DGLVYGWGtfRGNEGIMGFTGEslV-QKTPALISELK--NIVKVVCGDNHVVAL 308
                 8******************666443.458*******9..*************97 PP

  == domain 5  score: 39.6 bits;  conditional E-value: 1.3e-13
                 TTEEEEEE--GGGTTSSSS---E....EEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgttesv....lvPtkveglsgnrvvkvacGddhtval 50 
                 +G Vy+WG+++++qLG+   e+     lvP++  +++   v  +++G++h++a+
  KKY17574.1 311 NGIVYAWGSGQQNQLGRRIVERTksngLVPRQFGLPK--TVANIFAGNNHSFAI 362
                 589**************6663333447******9999..9*************8 PP

  == domain 6  score: 27.7 bits;  conditional E-value: 7.2e-10
                 TTEEEEEE--GGGTTSSSS-..--E...EEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgtt..esv...lvPtkveglsgnrvvkvacGddhtval 50 
                 +G V++WG n++G  G+  +  e++   l+P+ ++ l++++++ +a G++h+va+
  KKY17574.1 365 SGLVFAWGLNSFGETGISINagEDEaaiLHPVTIAALRDKKITCMAGGSHHSVAV 419
                 599**************5555544445799***********************96 PP

  == domain 7  score: 19.6 bits;  conditional E-value: 2.3e-07
                 TEEEEEE--GGGTTSSSS-....--E.....EE......EEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   2 GrVysWGrndyGqLGlgtt....esv.....lv......PtkveglsgnrvvkvacGddhtval 50 
                 G+ y WGr d  q+Gl+ +    ++v      +      Pt+++g    ++  +a+G+dh++++
  KKY17574.1 423 GECYVWGRLDGFQCGLKLDslpqDNVivdsrGHprilirPTQIPGI---DAAYAAAGSDHCIVV 483
                 899*************555455322233333224446689999998...7**********9875 PP

  == domain 8  score: 15.7 bits;  conditional E-value: 3.8e-06
                 TTEEEEEE--GGGTTSSSS---EEEEEE-..GGGTTS-EEEEEEETTEEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgttesvlvPtkv..eglsgnrvvkvacGddhtva 49 
                 dG+ ysWG++  +q Glgtt++v v t +  +  +g++ v + +G++++v+
  KKY17574.1 486 DGKAYSWGFSAGYQTGLGTTDDVEVATHIdnTAVRGKKLVWAGAGGQFSVL 536
                 8*******************9987777773344444499999999999985 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.9   8.6e+03      19      26 ..     123     130 ..     123     132 .. 0.79
   2 !   21.5   0.2   3.2e-08   0.00014       1      29 [.     162     190 ..     162     191 .. 0.93
   3 !   21.2   0.2     4e-08   0.00018       3      24 ..     244     265 ..     242     272 .. 0.90
   4 !   31.9   1.1   1.8e-11     8e-08       1      28 [.     295     322 ..     295     326 .. 0.90
   5 !   31.8   0.3   1.9e-11   8.7e-08       1      29 [.     349     377 ..     349     378 .. 0.93
   6 !   17.1   1.6     8e-07    0.0036       5      25 ..     410     430 ..     405     437 .. 0.84
   7 !   19.3   0.3   1.5e-07   0.00069       5      24 ..     474     493 ..     471     499 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.9
      RCC1_2  19 eVlcWGsN 26 
                 +V+ +G+ 
  KKY17574.1 123 DVYVFGQG 130
                 699***96 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 3.2e-08
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNsdG 29 
                 V+ +++G+ H+ aLt d+++++WG N+ G
  KKY17574.1 162 VVELACGGMHTAALTYDNKIYTWGVNDQG 190
                 6789*********************9877 PP

  == domain 3  score: 21.2 bits;  conditional E-value: 4e-08
      RCC1_2   3 svsaGdyHscaLtedGeVlcWG 24 
                 +++aGd+ ++aLt+dG V++WG
  KKY17574.1 244 HLAAGDSTTFALTDDGLVYGWG 265
                 689******************* PP

  == domain 4  score: 31.9 bits;  conditional E-value: 1.8e-11
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNsd 28 
                 +++v +Gd+H +aL+++G+V++WGs   
  KKY17574.1 295 IVKVVCGDNHVVALDTNGIVYAWGSGQQ 322
                 799*********************9654 PP

  == domain 5  score: 31.8 bits;  conditional E-value: 1.9e-11
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNsdG 29 
                 V+ + aG++Hs+a+t++G V++WG Ns+G
  KKY17574.1 349 VANIFAGNNHSFAITRSGLVFAWGLNSFG 377
                 56688***********************9 PP

  == domain 6  score: 17.1 bits;  conditional E-value: 8e-07
      RCC1_2   5 saGdyHscaLtedGeVlcWGs 25 
                 + G+ Hs+a+te Ge + WG+
  KKY17574.1 410 AGGSHHSVAVTEGGECYVWGR 430
                 679999**************6 PP

  == domain 7  score: 19.3 bits;  conditional E-value: 1.5e-07
      RCC1_2   5 saGdyHscaLtedGeVlcWG 24 
                 +aG++H +++t dG+ ++WG
  KKY17574.1 474 AAGSDHCIVVTKDGKAYSWG 493
                 89*****************9 PP

>> Hira  TUP1-like enhancer of split
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.048   2.1e+02      15      49 ..     163     197 ..     150     257 .. 0.64
   2 ?   -1.4   0.0      0.35   1.6e+03      15      37 ..     243     265 ..     239     271 .. 0.85
   3 ?    0.9   0.0      0.07   3.1e+02      13      38 ..     294     319 ..     285     328 .. 0.82
   4 ?   -0.8   0.0      0.23     1e+03      20      38 ..     355     373 ..     345     377 .. 0.80
   5 !    6.2   0.0    0.0017       7.5      13      93 ..     405     491 ..     399     498 .. 0.60

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.048
        Hira  15 sfLessgsyLlavtsvgllyvWnvkkkkvllppvs 49 
                 + L++ g + +a+t +  +y W v+ + +l + + 
  KKY17574.1 163 VELACGGMHTAALTYDNKIYTWGVNDQGALGRDTA 197
                 668999999999**********9988877665544 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.35
        Hira  15 sfLessgsyLlavtsvgllyvWn 37 
                 ++L++ +s  +a+t +gl+y W 
  KKY17574.1 243 THLAAGDSTTFALTDDGLVYGWG 265
                 57888889999**********96 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.07
        Hira  13 pasfLessgsyLlavtsvgllyvWnv 38 
                 +++ + + +++++a+ ++g +y W  
  KKY17574.1 294 NIVKVVCGDNHVVALDTNGIVYAWGS 319
                 567788999***************65 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.23
        Hira  20 sgsyLlavtsvgllyvWnv 38 
                  +++ +a+t++gl++ W +
  KKY17574.1 355 GNNHSFAITRSGLVFAWGL 373
                 567889***********87 PP

  == domain 5  score: 6.2 bits;  conditional E-value: 0.0017
        Hira  13 pasfLessgsyLlavtsvgllyvW.nvkkkkvllppvslap...llssssrsseke...ltrapavtsasltsn.Gvpivtlsngdgyl 93 
                 +++ ++  +++ +avt+ g++yvW  ++  ++ l+  sl +   +++  sr +       t+ p ++ a   +   + iv+ ++g++y+
  KKY17574.1 405 KITCMAGGSHHSVAVTEGGECYVWgRLDGFQCGLKLDSLPQdnvIVD--SRGHPRIlirPTQIPGIDAAYAAAGsDHCIVVTKDGKAYS 491
                 566666777999************33566777775555532111222..2222222555566666665554444466666666666665 PP

>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.2e-05      0.28      15      70 ..     286     339 ..     278     354 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.2e-05
  Exo_endo_phos_2  15 enlestlekllselkspkiiilGDfNakhplWgsedtdssargeeLiefleehsls 70 
                        l s+l+++++ ++  +++++ D N   ++Wgs +++  + g+ ++e +++++l 
       KKY17574.1 286 PALISELKNIVKVVCGDNHVVALDTNGIVYAWGSGQQN--QLGRRIVERTKSNGLV 339
                      568899*********99*****************7777..99*9999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.50
# Mc/sec: 3326.10
//
Query:       KKY17575.1  [L=601]
Description: putative rna polymerase ii mediator complex component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-81  272.6   0.0    7.3e-81  272.2   0.0    1.1  1  Med17     Subunit 17 of Mediator complex


Domain annotation for each model (and alignments):
>> Med17  Subunit 17 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.2   0.0   4.1e-85   7.3e-81      87     459 ..      11     374 ..       2     377 .. 0.92

  Alignments for each domain:
  == domain 1  score: 272.2 bits;  conditional E-value: 4.1e-85
                 TCHHHHHHHHH..GGG...SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHCCCCHCCSSHHHCCCTHCCHCCCCCHHHHHHHHSHHCCHHHHH CS
       Med17  87 eeeeeekkeDa..edklltqeefaklrkemiekinlAknesslaLdfisLLlSkvressaassmSpfLkkvvppgSLnadkvpkpkktkkeklelevln 183
                 ++++ e  +D   +d++   e++ k r+e++++i+ A+n +  aLdf+sLLl k ++++a +smSpfLk+++p+g+L+ +k  +  ++ +ek++ e+++
  KKY17575.1  11 QDVDGEGAMDEspDDREKRLENLYKGREEILRQIDTARNDAYSALDFVSLLLTKHNSRQAEASMSPFLKQNIPLGTLEPQKGRFAGPSAAEKRKIELVS 109
                 344444444444455567789****************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTCCCCCCCEEEEECCCCCCCEEEECCCCCHCC-..SEEEEEEEECTTTCCEEEC-SSSSSSE CS
       Med17 184 kGwklksLneardllkkaaakLkkevekEhkyWkeiqnisnkdvgwklrdkstgerslgvkygyedsgstfkdrgiAeLrrndegsklllvpllgskek 282
                  Gwk++sL ++++ l  aa++L+ke  +E+kyW+++   +++ +gw++ + ++++++lgv++g+ +++  f+++g+A+Lr++d+g+  l+ +  +sk++
  KKY17575.1 110 AGWKVESLGSSAEHLLGAASRLQKEAARESKYWEQV--SRIRAKGWAVSRVPQERHTLGVRFGFPEASLSFRNKGFAALRSKDDGDLYLDRGAYTSKHR 206
                 ************************************..9999********************************************************* PP

                 EEEEEEEEC.TTTSSEEEEEE----SS----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTEEECCCCEEEEC.SSCCCEEEEECCCCEGGGTS CS
       Med17 283 flrVriftkieseddyilsgessldeslkesdsdirkqieeakktiFekELfyelkkEaqqLisygVeiennkiviel.pnekleielvslddsslvnh 380
                 +++V+i       +++  +g ss++ +++ +++ i+++i +a++++Fe+ELf+e ++Ea +  s +  +  n i++ l + ++++i lv+l+++ ++ +
  KKY17575.1 207 SVKVTI------LENGREIGASSVPADTSVKSEAIEDEILQARNSLFEEELFHEANREATSSASLEFVTDRNLISFALkGGTEVQIRLVKLTQDVVEPA 299
                 ******......6778899******99*************************************9999888*******999*************88877 PP

                 TTTTTTTTHHHHHHCHHHHHHHHHHHHHHHHHHCCTCCCHCTSSSSSCHHCTTTCHHHHHHHHHHHHHHHHHHHHHCCC CS
       Med17 381 eqdapksndkranlilitlrllLvvifkknlrkrlasskttakasrslpkdillLrPilgklrhenyvdllrkilkklv 459
                 +q    + +  a+ i+++lr+lL+++++kn+ +r  ++    +++r++p +++lLrP+ + l+h+++v+ l k++++  
  KKY17575.1 300 TQ---WPSNDLAEGIALSLRILLSHAHRKNHERRTRPPPPLTTKQRPVP-EYPLLRPVFAFLQHRENVQDLDKWITEQL 374
                 66...788899********************999666655578888888.6***********************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.54
# Mc/sec: 3364.30
//
Query:       KKY17639.1  [L=1489]
Description: putative mediator of rna polymerase ii transcription subunit 12 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-26   91.6   0.1    7.5e-26   90.2   0.1    1.8  1  Med12         Transcription mediator complex subunit Med12
  ------ inclusion threshold ------
      0.094   12.7   0.0       0.22   11.5   0.0    1.5  1  Clathrin_bdg  Clathrin-binding box of Aftiphilin, vesicle tra


Domain annotation for each model (and alignments):
>> Med12  Transcription mediator complex subunit Med12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.1   8.3e-30   7.5e-26       1      63 []     258     320 ..     258     320 .. 0.99

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 8.3e-30
       Med12   1 fkpPsrvtlndakrenwlkdLadpsvpLtrLsrsvPhgfrgekLlemllrksVpisRAvWfir 63 
                 fkpP+rvtl++akr++wl+dL+dp+vpL++Lsr++P+g+rg++Ll+++l + +p+ RAvWf +
  KKY17639.1 258 FKPPPRVTLTEAKRKAWLNDLSDPNVPLRKLSRTIPQGIRGQQLLDQCLLNAIPLGRAVWFAK 320
                 89***********************************************************87 PP

>> Clathrin_bdg  Clathrin-binding box of Aftiphilin, vesicle trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.5e-05      0.22      22      48 ..    1192    1218 ..    1184    1240 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.5e-05
  Clathrin_bdg   22 seShcqenlLlvLGIDaaqkllsgskg 48  
                    +eS +   lL vLGIDaa+k+ ++ ++
    KKY17639.1 1192 EESGSWTALLTVLGIDAARKVRQQAED 1218
                    5899999*************9888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.55
# Mc/sec: 8157.24
//
Query:       KKY17640.1  [L=317]
Description: hypothetical protein UCRPC4_g05444 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-41  140.5   0.0    7.9e-41  140.0   0.0    1.2  1  FTA2      Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.0   0.0   4.4e-45   7.9e-41       5     215 .]      47     255 ..      44     255 .. 0.90

  Alignments for each domain:
  == domain 1  score: 140.0 bits;  conditional E-value: 4.4e-45
        FTA2   5 lpeidgPkLkpFdfsaekdiefleyL...gkglhsiVlkvkirgkeYALKlFrfleaeele........eaeedlkiprealkelasysdpfasECRAf 92 
                 lp+++gPkL pF ++ + +i+++ey+   ++  +s+V++v i gk YALK+F+f+e+e  +        + +++++ip   +    +++dpf sECRA+
  KKY17640.1  47 LPQCPGPKLGPFLPKPT-NIQYVEYIsdpEESGDSCVFEVLIHGKRYALKVFKFQEKEFYDydnwlhtgPGYHPERIPADETLP-MAHLDPFFSECRAY 143
                 8**************99.********776669999********************88887799999987777777777666554.5799********** PP

        FTA2  93 gRLkeag.redlAvkcyGYllLskeqekklsrkfdaqelevqnsfaketedrsralgeedgkkrpiraIVKelellkeqeelevsqlpkllrdlkklhk 190
                 g + ++g ++ ++  cyGYl+Ls+++e+ l ++      ++           +r l e ++   p+ra+VKe  l+ +  +++++q++ +l+dlk lh+
  KKY17640.1 144 GAIIDHGlNGIITPPCYGYLMLSEADEEHLLDEYGLNADDW-----------NRDLLEPADAGLPLRALVKE--LMPDGPQFTPDQVHPMLKDLKTLHR 229
                 *****************************999988665444...........4566788999**********..9999********************* PP

        FTA2 191 lgIvvrD.lkeenyidgkLvDlsaai 215
                  gI++ D l ++ny+ gkL D+s+a+
  KKY17640.1 230 IGIFLGDeLADRNYRFGKLFDFSRAM 255
                 ****988799*************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1931.27
//
Query:       KKY17641.1  [L=207]
Description: putative 2og-fe oxygenase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.9e-12   46.1   0.0    1.1e-11   45.4   0.0    1.3  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.077   13.5   1.9       0.59   10.7   1.9    2.3  1  2OG-FeII_Oxy    2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   1.2e-15   1.1e-11       2      95 ..      42     201 ..      41     202 .. 0.80

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 1.2e-15
                     EEEEE...-TT-EEEEE-SS--..............--TT.-.EEEEEEEEE....ET-B--.............................EEE. CS
  2OG-FeII_Oxy_3   2 qvlry...gegqeykpHvDnfe..............keegsgqrrltvllyLnekeseeGGe.............................lely 50 
                     q++ry    + q+y++H+D f+              +e +  +r++++++yL+ +e+ eGG                              +   
      KKY17641.1  42 QLVRYfshPTPQYYHAHYDHFDyllpdpttksfwhgGEGRLYNRVASFFVYLKASEDIEGGGtnfplidfdpknldprtvdslnrlisngdI--- 133
                     7888888644699**********************98888899*********8877766666599988888888777777777666666662... PP

                     .............................---TT-EEEEE-..B-T.........EEE--B.-SS-EEEEEEEE CS
  2OG-FeII_Oxy_3  51 ekdk....................eavkikpkkgrlvlFesdellp.........HevlpvtkggeRlsltgwi 95 
                                             +  ++ pk+g++v++ +  l+p         H++lpvtkg e++ +++w+
      KKY17641.1 134 ---IvkppkpadtpesqsasegplSGLTFNPKAGSAVFWVN--LHPsglgddrtlHAGLPVTKG-EKVGMNLWV 201
                     ...044444566666666777777777779***********..98999*************886.********8 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.9   6.6e-05      0.59      56      99 ..     155     201 ..      38     203 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.6e-05
                   -TTEEEEEE-HHHHHHTTS.....-S----EEE----GTGSEEEEEEEE CS
  2OG-FeII_Oxy  56 vdnslivniGdallflsng.....ryksvlHrVlpvnegerRvsiayfi 99 
                   + +++ +++G+a  f+ n       + ++lH++lpv++ge +v +++++
    KKY17641.1 155 SGLTFNPKAGSA-VFWVNLhpsglGDDRTLHAGLPVTKGE-KVGMNLWV 201
                   558899999996.888888899999999************.****9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.31s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1378.85
//
Query:       KKY17642.1  [L=411]
Description: hypothetical protein UCRPC4_g05446 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1255  (0.0699983); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2914.49
//
Query:       KKY17643.1  [L=429]
Description: putative ubx domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-06   28.4   0.0    3.6e-06   27.1   0.0    1.7  1  UBX       UBX domain


Domain annotation for each model (and alignments):
>> UBX  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0     2e-10   3.6e-06       6      72 ..     208     283 ..     204     287 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 2e-10
                 EEEEEEEETTSTEEEEEEESSSBH.HHHHHHHHHHCCCCCTS.......EEEEET.TTTEEGGCCC.CSBCCCCTTT CS
         UBX   6 atrlqiRlpdGsrlvrrFkksdtl.esvyeyVdsklfekeep.......FqLlts.fPrreltksd.kktLsdlgll 72 
                 ++rl++Rl +G++++ +F+k +tl ++++ +++s+l e  ++       F+L+    P+r+++ s+ ++tL++l l 
  KKY17643.1 208 DIRLAVRLLSGQSIRSTFPKASTLsKTIRPWISSHLQETGSReihtpysFKLILApKPNRTISISEeEMTLEEL-LS 283
                 689****************87777268************9888999999**97544*****************9.54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       978  (0.0545485); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.51
# Mc/sec: 2552.60
//
Query:       KKY17644.1  [L=135]
Description: hypothetical protein UCRPC4_g05448 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-37  128.0   1.6    4.2e-37  127.8   1.6    1.0  1  CMS1      U3-containing 90S pre-ribosomal complex subunit
    0.00056   19.7   0.2    0.00066   19.5   0.2    1.1  1  DEAD      DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.8   1.6   4.7e-41   4.2e-37     139     251 ..      20     134 ..       5     135 .] 0.90

  Alignments for each domain:
  == domain 1  score: 127.8 bits;  conditional E-value: 4.7e-41
        CMS1 139 aaDlaralkklqtkdskvakLFakhikleesvtylkksrigiavGtpgRildLleeeslsvdeLkrivlDasfvDkknrgildiretrkeviklLgake 237
                 +  + ral+++qtkd  vakLFakhikl+e +++++ksrigi++Gtp Ri dLl +++l+  +L riv+D s+vD+k+r+i+d+++  ++++++L ++e
  KKY17644.1  20 VNTVNRALREFQTKDAMVAKLFAKHIKLDEAIKTVQKSRIGIGIGTPARIKDLLSKDALKTGNLSRIVIDGSHVDQKKRTIFDMKDLFDPLLDILRRPE 118
                 45689********************************************************************************************** PP

        CMS1 238 vkerle..ekkvkvvf 251
                 + er+     k ++++
  KKY17644.1 119 LFERYGtdTSKIEIIV 134
                 ****984345566665 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.2   7.3e-08   0.00066      52     132 ..      15      93 ..       2     114 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 7.3e-08
                 EEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT.CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  52 ivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng.vdivvgtpgrlddllstgklnlsqvrflVlDEadr 132
                 i+  t   ++  l+++++      + ++l+ +  + ++ +++++++ + i +gtp r+ dlls+  l++ +++ +V+D  + 
  KKY17644.1  15 ILLSTVNTVNRALREFQTKDA---MVAKLFAKHIKLDEAIKTVQKSrIGIGIGTPARIKDLLSKDALKTGNLSRIVIDGSHV 93 
                 555555555555555544444...33345666666777777775445*******************************8875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.48
# Mc/sec: 848.30
//
Query:       KKY17645.1  [L=360]
Description: hypothetical protein UCRPC4_g05449 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-33  114.1   0.1    3.2e-33  114.1   0.1    1.6  2  CENP-T_C  Centromere kinetochore component CENP-T histone fol
    6.9e-06   26.3   0.0    1.3e-05   25.5   0.0    1.4  1  CENP-S    CENP-S protein
    0.00067   20.0   0.2     0.0016   18.8   0.2    1.6  1  Histone   Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
      0.042   13.9   0.0      0.073   13.1   0.0    1.3  1  Bromo_TP  Bromodomain associated


Domain annotation for each model (and alignments):
>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.3   5.9e+03       5      31 ..     225     252 ..     222     253 .. 0.69
   2 !  114.1   0.1   7.2e-37   3.2e-33       1     103 [.     254     358 ..     254     360 .] 0.96

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.3
    CENP-T_C   5 vpslPaavvkklakrfakasg.skakle 31 
                  ps P+ +v++  + +  +   +k+k++
  KKY17645.1 225 EPSSPEPAVSHQNQALPAKVHrKKQKIS 252
                 6778888888888877665555777776 PP

  == domain 2  score: 114.1 bits;  conditional E-value: 7.2e-37
    CENP-T_C   1 rgievpslPaavvkklakrfakasg.skaklekealkalekasdkffeqvgeDLeayakHagR.KtidesDvilLmkrqrkvtskttlfslaqryLPrE 97 
                 +gi+vp+lP++++k+l+ ++  + g +k ++ +++lkale+a+++ffeq+geDLe+ya+HagR ++i e+Dv++Lmkrqr+v+s    +sla+++LP++
  KKY17645.1 254 HGIKVPTLPSSLIKRLGMDALVSMGrRKSRIGRDSLKALEQATEWFFEQIGEDLEVYAEHAGRqRRIVENDVVALMKRQRRVSSRDARHSLAKEHLPKD 352
                 799**********************9***********************************99457********************************* PP

    CENP-T_C  98 llqelr 103
                 +l+el 
  KKY17645.1 353 VLRELD 358
                 ***996 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   2.8e-09   1.3e-05      41      74 ..     299     333 ..     278     335 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 2.8e-09
      CENP-S  41 qlenlakDLeaFakHAkRst.ittdDvlLlaRrne 74 
                   e++++DLe++a+HA+R+  i  +Dv+ l++r++
  KKY17645.1 299 FFEQIGEDLEVYAEHAGRQRrIVENDVVALMKRQR 333
                 46789*************9889999*999999875 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.2   3.6e-07    0.0016      16     126 ..     211     327 ..     199     332 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.6e-07
                 XXXXXXXXXXHT.TS-SSSSB--TTT-XTTHHHHHHHHHHHHXXSXXSXHHHHHHHHH....HHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHH CS
     Histone  16 apekkvsakker.kasskskkkkkrryrpgtvalkeirkyqkstdlliqklpfaRvvr....eivksekedlrisaeavlalqealEallvelfeeAnl 109
                 +p ++   ++e+ +++s+++++++++ +   ++ + ++++ ++   + + lp + + r     +v+  + + ri ++++ al +a+E +++++ e+ + 
  KKY17645.1 211 SPTQASGWESEPeTEPSSPEPAVSHQNQALPAKVHRKKQKISKHGIKVPTLPSSLIKRlgmdALVSMGRRKSRIGRDSLKALEQATEWFFEQIGEDLEV 309
                 4455555555556777777777777777777777777777777777888888665444444556669999***************************** PP

                 HHHHTTXS.EEXHHHHHH CS
     Histone 110 lakhaKRv.TitpkDiql 126
                 +a+ha R+ +i   D+ +
  KKY17645.1 310 YAEHAGRQrRIVENDVVA 327
                 *****9962577777665 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.6e-05     0.073      28      65 ..     288     326 ..     282     331 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHTTSS-SS--.HHHHH CS
    Bromo_TP  28 aLEtLteiaqkYirelgeqaksfaehagRsept.lkDvv 65 
                  L +L + ++ + +++ge+ + +aehagR       Dvv
  KKY17645.1 288 SLKALEQATEWFFEQIGEDLEVYAEHAGRQRRIvENDVV 326
                 68899999*********************9888344555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 2400.99
//
Query:       KKY17646.1  [L=163]
Description: hypothetical protein UCRPC4_g05450 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.48
# Mc/sec: 1023.49
//
Query:       KKY17647.1  [L=339]
Description: putative chitin deacetylase 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-11   43.8   0.0    3.6e-11   43.0   0.0    1.4  1  Polysacc_deac_1  Polysaccharide deacetylase


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0     2e-15   3.6e-11      14     121 ..      89     198 ..      79     201 .. 0.90

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 2e-15
                      EESSCSCHHHHHHHHHHCT--EEEEE-HHHHCH-HHHHHHHHHTTEEEEE--SS--EGGGSHHHHHHHHHHHHHHHHHHHHS----EEE-GGGE CS
  Polysacc_deac_1  14 DdgprdntteilpvLkkykvkatffvigglvedypdevremaasGveignHtinhsnlkrlseeevrreierakdalrkalgreprlfryPygs 107
                      + g+r ++ +++ +++ky+ k t++ +g+ +e +p+   e +++G+++++H + + ++ ++ ++++++ ++++ + lr  +g +p+ + y  +s
       KKY17647.1  89 EYGSRAGVWRLFRLFNKYGYKYTLYAVGKAIECNPEVGIESVKNGHDVASHAYRWIDYHDMPADQEKDLVKKCIESLRVTCGVTPKGWYYGRLS 182
                      5688999*********************************************************************************999888 PP

                      ..E-HHHHHHHHHTT. CS
  Polysacc_deac_1 108 ..asatvlevarelgf 121
                         +a v ev++e+g+
       KKY17647.1 183 prSKALVHEVYEEMGL 198
                      4333444677777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2368.47
//
Query:       KKY17648.1  [L=406]
Description: putative 12-oxophytodienoate reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-67  227.0   0.0    6.1e-67  226.3   0.0    1.3  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil
  ------ inclusion threshold ------
       0.19   11.5   0.0       0.32   10.8   0.0    1.3  1  ORMDL         ORMDL family


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.3   0.0   6.8e-71   6.1e-67       2     341 ..      12     378 ..      11     379 .. 0.82

  Alignments for each domain:
  == domain 1  score: 226.3 bits;  conditional E-value: 6.8e-71
                   CCS-EEETT..EEESSSEEE----S-TTTTTCS.............HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHH CS
  Oxidored_FMN   2 LFkPikign..mtLknRivmapmtrlraldkgn............vledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrk 84 
                   +F+P+kign   tLk+R+v ap+tr r+++ ++            v +dl +eyysqra  +++lii+e++ ++ +s+gf++    +  +q+++w+k
    KKY17648.1  12 IFTPLKIGNgkITLKHRVVLAPLTRNRGTPLNGstiptkyseniwVHDDLGVEYYSQRAT-EGGLIISEGIPPSLESNGFPGGK-AYGIQQVKSWKK 106
                   8*******9889*************99876321111111112222445899********9.9*******************986.5999******** PP

                   HHHHHHHTT-EEEEEEE--GGGS..SCSTCEC.....SS.ESSSSSTTT-.......S...CS..-E...E--HHHHHHHHHHHHHHHHHHHHTT-S CS
  Oxidored_FMN  85 lteavhengskvvvqlwhlGreakseyladqe...vdspsdpvaldaqee......esaeevy..kk...eltkeeikqliqefveAAkraieAgfD 167
                   +++avh++g+ +  qlw +Gr+  +e+        +  p    a d +e       e++e+ +  ++    ltk++ik+ i   ++ Ak+a+eAgfD
    KKY17648.1 107 VVDAVHAKGGVIYAQLWFAGRATIDEMTGSRPlssS--PT---AWDTDEYyagpswETGEKIMykDRppiGLTKDQIKEQIGVCAHFAKLAMEAGFD 198
                   ***********************9998888886442..32...2222222234446333333212222228************************** PP

                   EEEEEE-CTSHHHHHH-TTT----STTSSSHHHHHHHHHHHHHHHHHHH-SSSEEEEEECE--STTS--HHHHHHHHHHHCHCCEEEEEEETT-SSS CS
  Oxidored_FMN 168 gVeihganGYLlnqFlspksnkrtDeygGslenRarFllevvdaVkeavgeervgyRlSpedvvekgldfaetaqkivllkelekrlkdgkklalvh 264
                   gVe hg nGY+++qFls + nkrtDeygGs+e   rF++e++ a  +a+g+e +++RlSp+++++   ++  +     l  el++ l+   +l++vh
    KKY17648.1 199 GVEAHGGNGYIIEQFLSSNINKRTDEYGGSVEGYTRFPIELMTAMADAIGQENLAIRLSPFGLYNRARGEKRVEIWGHLCRELKRLLP---NLSYVH 292
                   *****************************************************************98888777446667777777777...9***** PP

                   SSTTS-TTTTHHHCCTT.HHH........HHHCC.CHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCTCG CS
  Oxidored_FMN 265 aaeprkrgagsvrteqe.knt........efvke.vwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkglpl 341
                     epr  +  s + +q+  ++        ++ ++     p++t+g+++d +    + + g+ d  a+gR+f+++pdl+++lk++lpl
    KKY17648.1 293 FLEPRYEQIHSYEEKQKfLDAwglsdvdlSMFRHiFHGTPFLTAGGWNDTN-VWGQIEAGKYDAFAIGRYFISNPDLPRRLKEKLPL 378
                   ***998877777777655554777777775555515678***********9.7778889999**********************997 PP

>> ORMDL  ORMDL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.6e-05      0.32      53      83 ..     324     352 ..     298     376 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.6e-05
       ORMDL  53 llHwikGtPfetadqgeydeltlWEQidege 83 
                 + H+ +GtPf t  +g +++ ++W Qi+ g+
  KKY17648.1 324 FRHIFHGTPFLT--AGGWNDTNVWGQIEAGK 352
                 449*******87..9************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2733.31
//
Query:       KKY17649.1  [L=181]
Description: putative chch domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-09   37.8  16.5    2.7e-09   37.5  16.5    1.1  1  DUF2076         Uncharacterized protein conserved in bacteria
    9.2e-06   25.7   1.8    1.4e-05   25.0   1.8    1.3  1  CHCH            CHCH domain
     0.0068   16.4   0.4      0.014   15.4   0.4    1.5  1  CX9C            CHCH-CHCH-like Cx9C, IMS import disulfide rel
  ------ inclusion threshold ------
        3.2    8.6  14.7    2.3e+02    2.7  14.6    2.3  1  Nucleoporin_FG  Nucleoporin FG repeat region


Domain annotation for each model (and alignments):
>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5  16.5   6.1e-13   2.7e-09     102     212 ..      16     133 ..       4     161 .. 0.64

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 6.1e-13
     DUF2076 102 rpqpspqarpaapagqalgqeeqyaaqpgyaq..qqaqpqygqpaaapqpggGggFLggAlqtAAGVaGGvllangleslfsgksgeegaasasqsaee 198
                 r++++pqa pa+pa+++++q+ ++a+  +y++  q ++p +g ++a+pq+++G g +g  ++tAAGVa G+ ++ ++ s+f g  g++ ++ a+q++++
  KKY17649.1  16 RAPTRPQAVPARPAAPQQQQT-RPASTAAYPPpaQVGHPPAGAQQAPPQASQGPGLFGQMASTAAGVAVGSSIGHAVGSMFTGWGGSS-SEPAAQQQQQ 112
                 455666666666665533333.33333444445556777777777777789999*****************************76554.4445777778 PP

     DUF2076 199 eeiinnyy.......ssssla 212
                 ++ ++ y+       +++ ++
  KKY17649.1 113 QQSVDAYAkpmdanlYGNATQ 133
                 888887774433333222222 PP

>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   1.8   3.2e-09   1.4e-05       1      34 [.     143     176 ..     143     177 .. 0.96

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 3.2e-09
                 THHHHHHHHHHHHHCTSSTTTTHHHHHHHHHHHC CS
        CHCH   1 CgeefkeylkClkdnsdefskCrkefeafkeCvk 34 
                 C+   k + +C+ ++  ++s C+++++++k+C +
  KKY17649.1 143 CAADIKSFNTCMTEHQGNMSICGWYLDQLKACTQ 176
                 99999***************************87 PP

>> CX9C  CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.4   3.2e-06     0.014       8      42 ..     143     177 ..     141     178 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.2e-06
        CX9C   8 CpkefeaYhkCvssnqswpekCkeqkkeLakCiks 42 
                 C  + +++  C++ +q + + C  + ++L  C+++
  KKY17649.1 143 CAADIKSFNTCMTEHQGNMSICGWYLDQLKACTQA 177
                 9999****************************985 PP

>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7  14.6     0.052   2.3e+02       7      29 ..      63      95 ..      17     146 .. 0.46

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.052
  Nucleoporin_FG  7 atstsgglFGststt..........atstgglF 29
                    ++s++ glFG+ ++t            + g++F
      KKY17649.1 63 QASQGPGLFGQMASTaagvavgssiGHAVGSMF 95
                    222222333333333333222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1343.97
//
Query:       KKY17650.1  [L=601]
Description: putative branchpoint-bridging protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-44  150.8   1.7    3.9e-44  149.6   1.7    1.7  1  SF1-HH     Splicing factor 1 helix-hairpin domain
      7e-12   44.9  11.1    1.4e-05   24.9   0.8    2.4  2  zf-CCHC    Zinc knuckle
    3.7e-08   33.1   0.1      7e-08   32.2   0.1    1.5  1  KH_1       KH domain
    1.2e-06   28.4   5.9     0.0015   18.5   2.9    2.6  2  zf-CCHC_3  Zinc knuckle
     0.0016   18.1   5.0       0.45   10.3   0.4    2.4  2  zf-CCHC_4  Zinc knuckle
  ------ inclusion threshold ------
      0.015   15.1   0.5      0.015   15.1   0.5    2.4  2  zf-CCHC_2  Zinc knuckle
      0.032   14.1  15.5       0.35   10.8   0.5    3.9  3  zf-CCHC_6  Zinc knuckle


Domain annotation for each model (and alignments):
>> SF1-HH  Splicing factor 1 helix-hairpin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.6   1.7   1.5e-47   3.9e-44       2     113 .]     108     217 ..     107     217 .. 0.94

  Alignments for each domain:
  == domain 1  score: 149.6 bits;  conditional E-value: 1.5e-47
      SF1-HH   2 ksrWgeeeekekkakieglptaipgnltqeqleayllqlrieeitrkLrtgdlvppeeeeRspSPpPvYdanGkRtntrevrvrkkLekerhelieeav 100
                 ++rWg+++ ++k a  +glpt+i +n+t eqleay l+lrieei++kLr++d+vp++  +RspSPpP+Yd+ G+R+ntre+r+rk+Le+erh+lie+a+
  KKY17650.1 108 RNRWGDAQ-ENKAAGLMGLPTMIMSNMTTEQLEAYTLHLRIEEISQKLRINDVVPAD-GDRSPSPPPQYDNFGRRVNTREYRYRKRLEDERHKLIEKAM 204
                 79***975.5566668************************************88877.***************************************** PP

      SF1-HH 101 kiipsfkpPadYk 113
                 k+ip+++pP+dY+
  KKY17650.1 205 KMIPNYHPPSDYR 217
                 ************7 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   3.6   8.2e-09   2.1e-05       2      18 .]     350     366 ..     349     366 .. 0.94
   2 !   24.9   0.8   5.5e-09   1.4e-05       2      17 ..     375     390 ..     374     391 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 8.2e-09
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                 +C nCG++GH++ dCp+
  KKY17650.1 350 ACQNCGQIGHRKYDCPE 366
                 7***************6 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 5.5e-09
                 CTSSSSSSSSTTTTST CS
     zf-CCHC   2 kCynCGepGHiardCp 17 
                  C+ CG+ GH+ardCp
  KKY17650.1 375 ICRVCGNAGHMARDCP 390
                 6**************9 PP

>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.1   2.7e-11     7e-08      10      65 ..     242     312 ..     223     313 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 2.7e-11
                 HHHHHHTGGGHHHHHHHHHHT-EEEEES.STT................T.-EEEEEE.SHHHHHHHHHHHH CS
        KH_1  10 lvgriIGkgGsnIkeIreetgakIkvpk.sedeg.............sderevtisG.speavekAkelie 65 
                 +vg++IG++G+++k+++ e+gakI + + ++  +             +++  + i   ++e+v+kAk+li+
  KKY17650.1 242 KVGLLIGPRGNTLKKMETESGAKIAIRGkGSVKEgkgrsdaahtsnqEEDLHCLIMAeTEEKVNKAKQLIH 312
                 5************************98433333368999******9888888888999***********97 PP

>> zf-CCHC_3  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   2.9   5.8e-07    0.0015       3      25 ..     347     367 ..     345     372 .. 0.84
   2 !   10.6   0.0   0.00017      0.43       2      22 ..     371     391 ..     370     405 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 5.8e-07
   zf-CCHC_3   3 asaaCQkClkkGHwtYECknage 25 
                 +++aCQ+C++ GH  Y C+  ++
  KKY17650.1 347 ENQACQNCGQIGHRKYDCP--EQ 367
                 689***************9..33 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00017
   zf-CCHC_3   2 nasaaCQkClkkGHwtYECkn 22 
                 +a++ C  C+  GH++  C+ 
  KKY17650.1 371 TANIICRVCGNAGHMARDCPD 391
                 5899***************95 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.4   0.00018      0.45      33      48 ..     350     365 ..     348     366 .. 0.90
   2 !    9.6   0.5   0.00029      0.73      32      48 ..     374     390 ..     372     391 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
   zf-CCHC_4  33 fCyiCgvlGHsdkrCd 48 
                 +C +Cg +GH   +C+
  KKY17650.1 350 ACQNCGQIGHRKYDCP 365
                 7**********99997 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00029
   zf-CCHC_4  32 sfCyiCgvlGHsdkrCd 48 
                 ++C +Cg  GH +++C+
  KKY17650.1 374 IICRVCGNAGHMARDCP 390
                 79**************7 PP

>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   2.9      0.12     3e+02       6      21 .]     351     366 ..     350     366 .. 0.91
   2 ?   15.1   0.5   5.9e-06     0.015       5      20 ..     375     390 ..     375     391 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.12
   zf-CCHC_2   6 ChiCgkkGHyIqdCPt 21 
                 C  Cg+ GH   dCP+
  KKY17650.1 351 CQNCGQIGHRKYDCPE 366
                 999******9999996 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 5.9e-06
   zf-CCHC_2   5 vChiCgkkGHyIqdCP 20 
                 +C++Cg+ GH  +dCP
  KKY17650.1 375 ICRVCGNAGHMARDCP 390
                 8*************** PP

>> zf-CCHC_6  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.7   0.00024      0.63       4      20 ..     351     365 ..     350     372 .. 0.85
   2 ?   10.8   0.5   0.00014      0.35       4      23 ..     376     393 ..     373     400 .. 0.89
   3 ?    0.7   2.0      0.19   4.9e+02      20      32 ..     561     573 ..     560     576 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00024
   zf-CCHC_6   4 CknCGAFGHtarSkrCP 20 
                 C+nCG +GH+     CP
  KKY17650.1 351 CQNCGQIGHRK--YDCP 365
                 *********98..7787 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00014
   zf-CCHC_6   4 CknCGAFGHtarSkrCPmkc 23 
                 C+ CG  GH+a  + CP ++
  KKY17650.1 376 CRVCGNAGHMA--RDCPDRQ 393
                 ***********..8999876 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.19
   zf-CCHC_6  20 Pmkcwngalvpqp 32 
                 Pm++++ga++p p
  KKY17650.1 561 PMYQQYGAPPPPP 573
                 9*********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 4776.10
//
Query:       KKY17651.1  [L=210]
Description: hypothetical protein UCRPC4_g05455 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-05   22.5   0.0    0.00046   19.3   0.0    2.0  1  MBA1      MBA1-like protein


Domain annotation for each model (and alignments):
>> MBA1  MBA1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.6e-08   0.00046     139     213 ..     121     194 ..      28     205 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.6e-08
        MBA1 139 lmip.gkplelvqlvyrfdtkQklikvdkksskvekldrdvvdyiaflldattn....ellLvGsvfeskvdaklPkkte 213
                 + +p g+  ++ q+v+r+  kQ+l    +k  kv+  d + +++i+++          ++  +G+++es+ d+   +  +
  KKY17651.1 121 VALPiGQNSGMRQVVVRISSKQRL----EKDGKVK--DWEGTEHIVIQKTKHFGkeddKWKVWGTIPESNWDEIADELAK 194
                 444425667799************....4444444..4448889999887765445669**********99877555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.34s 00:00:00.85 Elapsed: 00:00:00.50
# Mc/sec: 1251.67
//
Query:       KKY17652.1  [L=804]
Description: putative rho gtpase activator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-46  158.5   0.0    2.3e-46  157.4   0.0    1.6  1  RhoGAP      RhoGAP domain
    2.2e-12   47.1   1.8    1.1e-11   44.8   0.1    2.4  2  FCH         Fes/CIP4, and EFC/F-BAR homology domain
  ------ inclusion threshold ------
       0.22   11.6   1.9         11    6.0   0.2    2.6  2  Laminin_II  Laminin Domain II
       0.23   10.8   9.7       0.23   10.8   8.8    1.4  1  DUF4407     Domain of unknown function (DUF4407)
       0.38   11.1   4.8        1.1    9.6   4.8    1.8  1  OmpH        Outer membrane protein (OmpH-like)
        1.6    9.7   5.3         20    6.2   0.2    2.5  2  SMAP        Small acidic protein family
        7.9    6.7   7.6        2.7    8.2   2.5    2.2  2  Cor1        Cor1/Xlr/Xmr conserved region


Domain annotation for each model (and alignments):
>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.4   0.0   9.1e-50   2.3e-46       1     146 [.     613     762 ..     613     765 .. 0.98

  Alignments for each domain:
  == domain 1  score: 157.4 bits;  conditional E-value: 9.1e-50
                 BHHHHHHHHHHHHHTTTSTTTTTS-S-HHHHHHHHHHHHHTGGGCT....TTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHHHHTSSSHHHHHHH CS
      RhoGAP   1 PiivekcvefiekrgldtegiyRvsgskarvkelreafdkgkavds....dleeedvhavaslLKrfLrelpepLltkelyeelieaaksedeeerlea 95 
                 P+iv++c+++++  gl++egiyR sgs+ ++ e+++ fd+++++ +    ++ ++d+ +va+l+K+f+r+lp+pLlt  +y+e+i+aa++ d+  r ++
  KKY17652.1 613 PMIVYQCIQAVDMFGLEVEGIYRTSGSNPHIMEMKQMFDHDSSSLDfrdpSTFSHDISSVAGLIKLFFRSLPNPLLTSAHYSEFISAAQIPDDVLRRDS 711
                 9******************************************9879999999********************************************** PP

                 HHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHH---HHHHHHHHHHHHHT- CS
      RhoGAP  96 lkellekLPkenrdtLryLlehLkrvaenskenkMtaknLaivfaPtLlrp 146
                 l+++++ LP++n++tLr L+ hL+rv++++++n+Mta+nLaiv++PtL+++
  KKY17652.1 712 LHAIINALPDPNYATLRILMLHLNRVQQRHAVNRMTAQNLAIVWGPTLMSN 762
                 ************************************************976 PP

>> FCH  Fes/CIP4, and EFC/F-BAR homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.1   4.5e-15   1.1e-11       1      72 [.     112     184 ..     112     189 .. 0.92
   2 ?    0.9   0.3      0.22   5.5e+02      27      64 ..     269     315 ..     266     327 .. 0.64

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 4.5e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT----TT.-.....HHHHHHHHHHHHHHHHHH CS
         FCH   1 gfkvlqkrleqgialledlqeflkeRaeiEkeYakkLqkLakkylkrr.kkkseestlvtawtvlleetekla 72 
                 g+ +l+ rl+q+ia+  d+++flk+R+ iE+e+a  L+kL++ ++++  + ++++++   a++++++  + ++
  KKY17652.1 112 GLTALLGRLKQSIASARDFAAFLKKRSIIEQEHAEDLKKLSRATHDSIrRPEHRQGSYAGAYEEIVKIQDGMS 184
                 7899*******************************************999999**********9998766666 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
                 HHHHHHHHHHHHHHCT----TT.-.............HHHHHHHHHH CS
         FCH  27 aeiEkeYakkLqkLakkylkrr.kkks........eestlvtawtvl 64 
                 a+ E++  kkLq+    yl++    ks         +  + ++++ l
  KKY17652.1 269 AQQEEDLLKKLQAADADYLSKVqAAKSqrqelistLRPQFTKSLQDL 315
                 66788888888888888888765555556664444444455555555 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.2    0.0045        11      67     108 ..      95     133 ..      91     152 .. 0.88
   2 ?    4.2   0.1     0.016        41      14      68 ..     196     247 ..     188     253 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0045
                 TTTTTGGGHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHT CS
  Laminin_II  67 lapqLldklkelkqleeassslsdniseikelIaqARkaAnk 108
                 + +qL ++l+++    ++   l + + ++k+ Ia AR+ A+ 
  KKY17652.1  95 NDEQLKAQLEKVTLSDVG---LTALLGRLKQSIASARDFAAF 133
                 557888999999888888...99****************985 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.016
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TT CS
  Laminin_II  14 evleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLekla 68 
                 +  ++l++l +n+e+ ++  +++ ++    ++ v da +a++ A+++   L ++ 
  KKY17652.1 196 QMSDDLQDLGANVERGRKHWKQVGTN---AEKRVLDAENAMDKAKSKYDSLAEQY 247
                 45567788888888888888888777...55667777777777777777776664 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   8.8   8.9e-05      0.23     121     222 ..     205     304 ..     137     320 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.9e-05
     DUF4407 121 kelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalrael 219
                  ++ e+ ++++++  +++e+++ ++++++d+a++++d l +++++  +g++++g  g +G   aa++ ++ l+++qa+ a++ +k   +a+ +++++ +
  KKY17652.1 205 GANVERGRKHWKQVGTNAEKRVLDAENAMDKAKSKYDSLAEQYDRARTGDRQSGRFGLKGPKSAAQQEEDLLKKLQAADADYLSK--VQAAKSQRQELI 301
                 4455555555666666677777799******************************************999999999998888888..444444444444 PP

     DUF4407 220 ael 222
                 ++l
  KKY17652.1 302 STL 304
                 443 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.8   0.00042       1.1      17     104 ..     215     314 ..     172     326 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00042
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS............-HHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  17 gkaaqeqlekkfkklqaeleakekelqklqeelqkkakkl.e..........keekeqe..lqkkeqelqqkqqqkaqelqkkqqellkpildkinkai 102
                 +k++ ++ ek   + ++++++ + ++++l+e+++++     +          + +++qe  l kk q+  +++  k q  ++++qel+  +  + +k +
  KKY17652.1 215 WKQVGTNAEKRVLDAENAMDKAKSKYDSLAEQYDRARTGDrQsgrfglkgpkS-AAQQEedLLKKLQAADADYLSKVQAAKSQRQELISTLRPQFTKSL 312
                 6788888888888999999999999999999998666555449*******963.333334688888888887777778889999998887777777666 PP

                 HH CS
        OmpH 103 ke 104
                 ++
  KKY17652.1 313 QD 314
                 65 PP

>> SMAP  Small acidic protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.6     0.013        32      40      74 ..     228     262 ..     201     264 .. 0.73
   2 ?    6.2   0.2    0.0077        20      32      64 ..     272     313 ..     260     320 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.013
        SMAP  40 nvaadvqkrqrlfsnLeqqYeaAraathtmrgvGL 74 
                  +++  +k+++   +L +qY++Ar   +++ + GL
  KKY17652.1 228 DAENAMDKAKSKYDSLAEQYDRARTGDRQSGRFGL 262
                 344556677777899**********7788888887 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0077
        SMAP  32 e.......gaggga......anvaadvqkrqrlfsnLeqqYeaAra 64 
                 e       +    a      ++v+a +++rq+l s L  q+ + ++
  KKY17652.1 272 EedllkklQ----AadadylSKVQAAKSQRQELISTLRPQFTKSLQ 313
                 234554331....123456789*******************99876 PP

>> Cor1  Cor1/Xlr/Xmr conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.2      0.21   5.5e+02      37     102 ..     180     245 ..     142     252 .. 0.79
   2 ?    8.2   2.5    0.0011       2.7      61     113 ..     269     321 ..     266     332 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.21
        Cor1  37 qklkeeysqqfltlfqqwetdvqkvkeqeeklsnlfqqqqkllqqarvvqeqrlkeikqlydqFlk 102
                 q   +e+  qf   ++q+  d+q++  + e+  +  +q     ++     e+ ++++k+ yd   +
  KKY17652.1 180 QDGMSEHGLQFALSLHQMSDDLQDLGANVERGRKHWKQVGTNAEKRVLDAENAMDKAKSKYDSLAE 245
                 455578889999999999999999999999999999999888888888888899999999987665 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0011
        Cor1  61 vkeqeeklsnlfqqqqkllqqarvvqeqrlkeikqlydqFlksledLekehek 113
                 ++++e+ l +l       l++++ +++qr + i +l+ qF+ksl+dL  e+++
  KKY17652.1 269 AQQEEDLLKKLQAADADYLSKVQAAKSQRQELISTLRPQFTKSLQDLIFECDS 321
                 456666677777788999****************************9777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.49
# Mc/sec: 4966.25
//
Query:       KKY17653.1  [L=340]
Description: putative golgi reassembly stacking protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-38  132.0   0.0    2.3e-38  131.6   0.0    1.1  1  GRASP55_65  GRASP55/65 PDZ-like domain


Domain annotation for each model (and alignments):
>> GRASP55_65  GRASP55/65 PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.0   1.3e-42   2.3e-38      24     137 ..      52     165 ..      34     166 .. 0.92

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 1.3e-42
                 SSSSSSEEEEEEE-TTTTTS-EEEEEEB.TTSHHHHHT--TTTEEEEEEE.SSSSSTSCSHHHHTTTSSS-EEEEEEETTTTEEEEEEE---TTSSSST CS
  GRASP55_65  24 gqgllGlslrlaslekaaeevwhvldvl.egsPaakagLvpksDYiiGldkgllkgeedlselveaheekelkLlvYnsesdevrevtvkpsrewGgeg 121
                 + + lG+s +++ l+ +++++wh+l+v  + sPa++agL+p+sDYi+G ++g+l+ge++l el+e+h +++l+L+vYnse d+vrev + p+r wGgeg
  KKY17653.1  52 SSQSLGVSFQFSPLS-TTQHIWHILNVPsPLSPAHQAGLLPHSDYILGSPSGTLRGESALGELIEDHINRNLVLWVYNSEFDVVREVKLIPRRGWGGEG 149
                 4589***********.***********9789******************************************************************** PP

                 TTSEEEE-SGGGS--- CS
  GRASP55_65 122 alGcdvgyGlLhriPe 137
                 alG ++gyG+Lhr+P 
  KKY17653.1 150 ALGAELGYGALHRLPI 165
                 ***************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2281.72
//
Query:       KKY17666.1  [L=593]
Description: hypothetical protein UCRPC4_g05441 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       928  (0.0517597); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.50
# Mc/sec: 3560.76
//
Query:       KKY17679.1  [L=739]
Description: hypothetical protein UCRPC4_g05312 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 4825.08
//
Query:       KKY17680.1  [L=271]
Description: hypothetical protein UCRPC4_g05313 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-05   24.5   0.0    0.00013   22.2   0.0    2.0  2  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   7.3e-09   0.00013      14      75 ..      53     114 ..      52     123 .. 0.82
   2 ?   -1.1   0.0      0.12   2.2e+03      20      35 ..     210     225 ..     188     240 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 7.3e-09
                 EEEETT.TEEEEE-HHHHHHH-HHHHHHHTSTTTTTCCCEEEEETTSGHHHHHHHHHHHHHSE CS
         BTB  14 tlvvgd.gkefkahkavLaarSpyFkalftskeieessvseielddvepeafealLefiYtge 75 
                 +lvvg  ++ f ah  vL+  Sp+F + ++++ + +++ ++++l+d epe+f  +Le++Y g 
  KKY17680.1  53 ALVVGRdQRLFAAHEDVLS-LSPFFVEALKDQFFVDANGKKVDLPDEEPEVFSCVLEYLYKGD 114
                 6788885667777888876.599999999999566777778*******************986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.12
                 TEEEEE-HHHHHHH-H CS
         BTB  20 gkefkahkavLaarSp 35 
                 +++++ah + L  rS 
  KKY17680.1 210 ESRLRAHYLALIIRSR 225
                 5788999999999884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.32s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1755.57
//
Query:       KKY17681.1  [L=329]
Description: hypothetical protein UCRPC4_g05314 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0012   19.2   2.4     0.0029   18.0   0.7    2.3  2  Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
  ------ inclusion threshold ------
      0.021   15.2   1.1       0.05   13.9   1.1    1.6  1  YccJ            YccJ-like protein
      0.026   13.6   0.9      0.059   12.4   0.1    1.6  1  DUF2252         Uncharacterized protein conserved in bacteria
      0.031   14.1   0.2      0.047   13.5   0.2    1.3  1  GspL_C          GspL periplasmic domain
      0.035   13.4   0.1      0.052   12.8   0.1    1.2  1  DUF1394         Protein of unknown function (DUF1394)


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.45   1.6e+03      38      65 ..     165     193 ..     144     199 .. 0.72
   2 !   18.0   0.7   8.1e-07    0.0029       3      64 ..     209     270 ..     207     272 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.45
                     HHHHHHHHHHC-.---HHHHHHHHHHHHH CS
  Myb_DNA-bind_4  38 eevaeamaergy.krspeqCkeKienLkk 65 
                     +++ae++a++g  +  p+ + +++  +k+
      KKY17681.1 165 KDIAERLAAEGRtSYMPKTIGTRWARIKR 193
                     67888888887525788888888877765 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 8.1e-07
                     SS-HHHHHHHHHHHHH..HHHHHHH..SS--HHHHHHHHHHHHHHC-..---HHHHHHHHHHHH CS
  Myb_DNA-bind_4   3 kWteeetklLieawgerilelrfqergkkrnkklWeevaeamaergy..krspeqCkeKienLk 64 
                      W e+  ++L++a+ +   +  +++ +++ ++k+W+ v+++m++ +   + s+  C+ +++ L+
      KKY17681.1 209 DWHEGDDEVLMQAIAK--ADRDIEKAKEQAESKKWKIVSDQMKTIKPvvNFSQNACQARFHALE 270
                     699***********99..566677755666666**********88643389*********9986 PP

>> YccJ  YccJ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.1   1.4e-05      0.05      34      54 ..     207     229 ..     197     240 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
        YccJ  34 i..WeeGsDevLklafaktdkdk 54 
                 +  W+eG+DevL  a ak d+d 
  KKY17681.1 207 MsdWHEGDDEVLMQAIAKADRDI 229
                 333*****************996 PP

>> DUF2252  Uncharacterized protein conserved in bacteria (DUF2252)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.7e-05     0.059     248     302 ..     148     204 ..     143     211 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.7e-05
     DUF2252 248 sdddpllLqiKeAr...psvlerlvsasepesseveheGeRvvegqrllqaasdifLg 302
                 ++dd+l++q+K+Ar   +  +erl+ a+ ++s+  ++ G R + + r+lq  +d +L 
  KKY17681.1 148 DSDDELIVQMKQARyleKDIAERLA-AEGRTSYMPKTIGTRWARIKRVLQDRQDDLLD 204
                 4569*********933223455555.777789999*******************9995 PP

>> GspL_C  GspL periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   1.3e-05     0.047     103     146 ..     209     253 ..     155     259 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.3e-05
                 EEETTTTCEEEEEEESSCHHHHHHHHHHHCT.EEEEEEEEEEETT CS
      GspL_C 103 dYdgkrgelrlqleakdfaafeqlrakaatk.fqveqgqlasegd 146
                 d++ +++e+ +q+ ak++ ++e+++++a++k +++  +q+++ + 
  KKY17681.1 209 DWHEGDDEVLMQAIAKADRDIEKAKEQAESKkWKIVSDQMKTIKP 253
                 8999***********************************998665 PP

>> DUF1394  Protein of unknown function (DUF1394)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.5e-05     0.052      19      90 ..     188     268 ..     184     289 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.5e-05
     DUF1394  19 yeeveevl.keaeeile.elksY.kgaeeeireaisnpsd......eeaqekawkavlplvaklkefyefssklekvvpkl 90 
                 + ++++vl ++++++l+ e++ + +g +e + +ai++  +      e+a++k wk+v+ +++++k + +fs++  ++  + 
  KKY17681.1 188 WARIKRVLqDRQDDLLDeEMSDWhEGDDEVLMQAIAKADRdiekakEQAESKKWKIVSDQMKTIKPVVNFSQNACQARFHA 268
                 889999**54566787526888845666667899998766677776899999*******************9876655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1147  (0.0639746); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2098.07
//
Query:       KKY17682.1  [L=428]
Description: hypothetical protein UCRPC4_g05315 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.068   13.2   0.3      0.068   13.2   0.3    2.4  2  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C
       0.19   12.1   1.1       0.49   10.7   1.1    1.7  1  DUF2175       Uncharacterized protein conserved in archaea (D


Domain annotation for each model (and alignments):
>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   2.2      0.17   1.5e+03      64      91 ..     155     183 ..     121     202 .. 0.45
   2 ?   13.2   0.3   7.6e-06     0.068      33      89 ..     190     246 ..     173     249 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.17
  Baculo_PEP_C  64 rldtlltnLtdalnalq.dtlrneLtnln 91 
                   + ++  + +t al +l+  +++n+  ++ 
    KKY17682.1 155 EAKQEEEDMTIALERLNlAAINNRVFSIS 183
                   33344444444444444444444444433 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 7.6e-06
  Baculo_PEP_C  33 laqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtn 89 
                   l + +  ++++ + + +  +dl++ll++ d++l+++++ L + l++l ++l n+Lt+
    KKY17682.1 190 LQKFNLVFKDLINGVPTAYDDLEKLLTNSDRQLQSTFKSLPSFLQRLIESLPNKLTS 246
                   5555556677778889999************************************96 PP

>> DUF2175  Uncharacterized protein conserved in archaea (DUF2175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.1   5.5e-05      0.49      16      88 ..      97     170 ..      90     181 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.5e-05
     DUF2175  16 ekFTftkkgvvHyeClvekarkklkes..edaaaLleleevlneeivklkelervaedeevkkvleqkrkelEka 88 
                 ek T+ +k+   ++ ++++ r+  +++  + a  L++++e ++++ v+ +++e+v +  e+k+  e++ + lE+ 
  KKY17682.1  97 EKSTIQSKAKTYWSWMRRDSRDSKRKDrdAAADNLTKIAEKVEDTKVQEENVEQVDD-AEAKQEEEDMTIALERL 170
                 67799999999******99999888885566778********************987.89999999999999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2179  (0.121535); expected 358.6 (0.02)
Passed bias filter:                      888  (0.0495287); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 2919.51
//
Query:       KKY17683.1  [L=562]
Description: hypothetical protein UCRPC4_g05316 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       682  (0.0380389); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.47
# Mc/sec: 3589.60
//
Query:       KKY17684.1  [L=310]
Description: putative alanyl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-06   28.3   0.9    2.5e-06   27.5   0.9    1.4  1  tRNA_SAD      Threonyl and Alanyl tRNA synthetase second addi
     0.0012   17.5   0.0     0.0021   16.6   0.0    1.4  2  tRNA-synt_2c  tRNA synthetases class II (A)


Domain annotation for each model (and alignments):
>> tRNA_SAD  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.9   2.8e-10   2.5e-06       1      35 [.     262     296 ..     262     302 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 2.8e-10
                 EEEEEETT.EEEEESS---SBGGGC-SEEEECCEC CS
    tRNA_SAD   1 vrvvsiGdisvelCgGtHvpnTgeIgafkilsees 35 
                 +rvv+i+ + v +CgGtHv+ T ++g+  + + ++
  KKY17684.1 262 LRVVKIEGTEVYPCGGTHVDTTDQCGKTTVRKISR 296
                 69****667****************9988776555 PP

>> tRNA-synt_2c  tRNA synthetases class II (A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.4e-07    0.0021     486     534 ..      82     134 ..      45     156 .. 0.78
   2 ?   -3.4   0.0      0.27   2.5e+03     472     472 ..     250     250 ..     214     290 .. 0.48

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.4e-07
                   EEEESEEXXXXSSSSCSXXXEEEEESS.EEEEESEEE...EETTEEEEEXSS. CS
  tRNA-synt_2c 486 gvvLdrTpfYaesGGqigDeGliekeg.aefrvkdvq...kakgvvlhkgkle 534
                    + + +T f +++GGq +D G+i++ +  +f+v  v+     +++vlh g++ 
    KKY17684.1  82 IITVPETIFHPQGGGQPSDVGTISSASgPTFTVLSVRtstTHDNLVLHLGHFD 134
                   355689***************99987755666655541104559999998875 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.27
                   X CS
  tRNA-synt_2c 472 d 472
                   +
    KKY17684.1 250 K 250
                   1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2378.40
//
Query:       KKY17685.1  [L=1039]
Description: putative f-box and wd domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0045   16.8  15.0     0.0065   16.3   0.4    3.6  3  UIM       Ubiquitin interaction motif


Domain annotation for each model (and alignments):
>> UIM  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2   0.9    0.0056     1e+02       1      13 [.     796     808 ..     796     811 .. 0.89
   2 !    5.3   1.7    0.0012        21       3      14 ..     866     877 ..     866     880 .. 0.94
   3 !   16.3   0.4   3.6e-07    0.0065       1      16 [.     956     971 ..     956     971 .. 0.97

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.0056
         UIM   1 dEdedLqrAlalS 13 
                 +E+e +++A  lS
  KKY17685.1 796 SEEELIAYATMLS 808
                 7*********999 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0012
         UIM   3 dedLqrAlalSl 14 
                 d+dL+ A++lSl
  KKY17685.1 866 DADLAEAIRLSL 877
                 89*********8 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 3.6e-07
         UIM   1 dEdedLqrAlalSlqE 16 
                 dEdedL  A++lSl+E
  KKY17685.1 956 DEDEDLNFAIRLSLAE 971
                 8*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1039 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 7096.93
//
Query:       KKY17686.1  [L=217]
Description: putative cytidine deoxycytidylate deaminase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-10   39.1   0.0    9.9e-10   38.2   0.0    1.4  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    1.4e-05   24.9   0.0      2e-05   24.4   0.0    1.2  1  MafB19-deam      MafB19-like deaminase


Domain annotation for each model (and alignments):
>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   1.1e-13   9.9e-10      22     100 ..      37     117 ..      21     118 .. 0.78

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 1.1e-13
                      TSCSEEEEEEETTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHH.T..SSCETTEEEEEEE--BHHHHHHHHHHT-SEEEEE CS
  dCMP_cyt_deam_1  22 snfkVGavivkngeiistgyngepaggsktiHAEvnAilkaakn.g..gsklegatlyvtlePCsmCakaiiqsgikkvvvg 100
                      s+   +av++k++  ++ + n+++ +gs++ H E+  i  + ++ +  + +++++ +++t+ePCs C  ai +sg +++v++
       KKY17686.1  37 SKLFGAAVLLKSDLSVVIADNNQE-SGSPIWHGETWTIKRFFEIpKdqRPDVKDCLFLTTHEPCSLCLSAITWSGFDNFVYL 117
                      444446777786677777777775.5666*************9985578899**************************9996 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   2.2e-09     2e-05      34     105 ..      52     122 ..      22     145 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2.2e-09
  MafB19-deam  34 kviargsnekelnakataHaEiaalqqAakklkskrl..ddatlyvtlepCdmCagaivqaglkklvygagnpk 105
                   via +++      ++  H+E   +++  +  k++r+  +d+   +t+epC+ C+ ai  +g  + vy   +++
   KKY17686.1  52 VVIADNNQ---ESGSPIWHGETWTIKRFFEIPKDQRPdvKDCLFLTTHEPCSLCLSAITWSGFDNFVYLYTYEE 122
                  33444433...3678999*************999997336**********************999998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1488.46
//
Query:       KKY17687.1  [L=631]
Description: putative mitochondrial pyruvate dehydrogenase kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.5e-42  142.7   0.1    1.2e-41  142.3   0.1    1.2  1  BCDHK_Adom3  Mitochondrial branched-chain alpha-ketoacid dehy
    3.5e-11   43.6   0.0    1.5e-10   41.5   0.0    2.1  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    1.2e-08   35.0   0.0      2e-08   34.2   0.0    1.4  1  DJ-1_PfpI    DJ-1/PfpI family
  ------ inclusion threshold ------
       0.08   12.6   0.0       0.18   11.5   0.0    1.5  2  ThiJ_like    ThiJ/PfpI family-like


Domain annotation for each model (and alignments):
>> BCDHK_Adom3  Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.3   0.1   2.7e-45   1.2e-41      17     162 .]       7     158 ..       1     158 [. 0.93

  Alignments for each domain:
  == domain 1  score: 142.3 bits;  conditional E-value: 2.7e-45
  BCDHK_Adom3  17 gtllksaqflreelpirlAhrvkelenlPdglvenpsvkkvkdwYaqsfeellelpkpe...leenekftelLekikkrHddvvttlaqGvlelkekr 111
                  + l+ sa+f+++ lp rlA r++ l+nlP+++v+np+++k++++Y++s+++ll ++k +   + e  +fte++++++++H+++++tla+G++e+++  
   KKY17687.1   7 EALIASANFTLSLLPARLAYRIQCLRNLPFIVVSNPHISKIYSNYLHSLSTLLPYQKRHiksIAEVAEFTEVMDDLVRTHSNTIPTLARGFMECRKY- 103
                  569****************************************************99844678889*****************************88. PP

  BCDHK_Adom3 112 krkqidseiqsFLdrfymsRIgiRmLieqhiaLteqsks.......kkepsdyvGiId 162
                        +e+++FL++++++RIg+R+++eqhiaL+++s         ++++s+y+G+Id
   KKY17687.1 104 ---ISPAEVTNFLEEHLRARIGTRLIAEQHIALHMESLPdsepgekDRNDSHYIGVID 158
                  ...67899****************************998999999878889******7 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   3.4e-14   1.5e-10       3     109 ..     202     387 ..     200     390 .. 0.73

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 3.4e-14
                 HHHHHHHHHHHHHHHHHH....HSTTTEEEE.................................................EEEEEE......TEEEEEE CS
   HATPase_c   3 ekrLrqiisnlvdNavkf....atkageiev.................................................eikase......ddlvisv 42 
                 + +L+ i+ +l++Na ++    +++ + iev                                                 +i   e        ++i++
  KKY17687.1 202 PVHLEYILTELLKNAFRAtiesENQREPIEVtiaaasdasqkglgelkqimldqatarhlmknneeldsakcdngvgrvdTI---EpaapaaPSITIRI 297
                 568999***********97765446677788556666666666666666666666666666666666555555555533333...134555679***** PP

                 EESSSSSTTHHHTGTCS.TTCH......................HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEEEEEEE CS
   HATPase_c  43 eDnGiGipkedlkklfe.kfsq......................ddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttftftlp 109
                 +D G Gi+++ l+++   +f++                       ++++++  g G+Gl ++++++e +gG i+v+s  g Gt++++tl+
  KKY17687.1 298 RDRGGGISPDVLPNIWSySFTTfgdkeaasvdagasdgmstlsrGSGNQSSLAGLGYGLPLSRAYAEYFGGGISVQSLFGWGTDVYLTLQ 387
                 *************5555555555556666666666666667886666666679**********************************997 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   4.6e-12     2e-08      58     164 ..     490     627 ..     457     628 .. 0.78

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 4.6e-12
                 TCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT-EEEEETTTHHHHHHTTT......TTTSEE--SGGGH.HHH...............HHTTSE CS
   DJ-1_PfpI  58 kaaeyDalvlpGGragperlrenekvvelvkefaekgklvaaICagpqlLaaagv......lkgrrvTsypavk.dkl...............ekagak 134
                 k++e+  +  pGG+    +l+ ++  +el+++f+e+gk+v a+C+gp  L++ ++      + g+ vT++ +v+ d++               +++g k
  KKY17687.1 490 KTGEFAGIYYPGGHGPMFDLASDPTSIELARDFYESGKVVSAVCHGPAALVNVKLsdgsylIAGQPVTGFSNVEeDQVglssampflletdlqKNSGGK 588
                 5678999999*****889*********************************988622222255677888888885555777777777777777666666 PP

                 E-SS......SEEEETT...EEEESSGGGHHHHHHHHHH CS
   DJ-1_PfpI 135 yvdk......rvvvdgn...lvTsrgpgaaiefalelle 164
                 ++        +vvv+g+   l+T ++p +a  +++++++
  KKY17687.1 589 FEKAdepwgvKVVVSGKggkLLTGQNPASAGPLGEAIVK 627
                 655567888878877766668888888877777776665 PP

>> ThiJ_like  ThiJ/PfpI family-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.6   7.2e+03     102     153 ..      39      91 ..      37     104 .. 0.65
   2 ?   11.5   0.0     4e-05      0.18      70     141 ..     479     542 ..     442     562 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.6
   ThiJ_like 102 leserlhsllveylklvkrek.epskvlgaicqgvlalafakpeldlktttlP 153
                 + ++ +++  ++yl++ ++    +++++ +i+  +      ++ +  ++ t+P
  KKY17687.1  39 VSNPHISKIYSNYLHSLSTLLpYQKRHIKSIAEVAEFTEVMDDLVRTHSNTIP 91 
                 56666777777777776665556667777776666655555555666666666 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 4e-05
   ThiJ_like  70 keplslssesFsleeydlvllpGGsdkavrelleserlhsllveylklvkrekepskvlgaicqgvlalafa 141
                 k+  +ls+ + +  e+  ++ pGG++++  +l  ++   +l +++        e  kv++a+c+g +al + 
  KKY17687.1 479 KKTEKLSDFKGKTGEFAGIYYPGGHGPMF-DLASDPTSIELARDFY-------ESGKVVSAVCHGPAALVNV 542
                 444455555557778899**********9.******99999*****.......789*********9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 3854.53
//
Query:       KKY17688.1  [L=452]
Description: putative mfs multidrug transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-24   84.2  28.1    2.1e-21   76.3  29.9    2.9  2  MFS_1      Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3  29.9   1.2e-25   2.1e-21     107     352 ..       3     297 ..       1     298 [. 0.91
   2 !    2.5   0.0    0.0032        57     149     184 ..     355     388 ..     347     428 .. 0.67

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 1.2e-25
       MFS_1 107 aaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee................. 188
                 + +++d+++ ++rg++ gll+a +++G+++gp  ++ +++s+ Wra f+ + +++++++v++++llp  +++ + k++ ++                  
  KKY17688.1   3 MMVLSDVVSLQDRGKYQGLLGANVGFGSVIGPFMAAGFIESATWRAHFWTVSPLAAVCGVVIIFLLPKGKVSAGAKEKLKLIdywgvffstaatmllli 101
                 67899*******************************************************9999999999999999999999***************** PP

       MFS_1 189 ..................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllall 253
                                                    + +  p+ p   +l++++ + ++l+a +lf++++++ ++++ply q v+g + ++++++l   l
  KKY17688.1 102 plsgggsyfawgssmvismmvlggiclvifmiieWKFATLPMMP--LHLFRNRAVASMLVANILFGAVYFSEVYFIPLYCQLVRGNT-AIESAALTIPL 197
                 *******************************9988899999999..555555555578888899999********************.56666666666 PP

       MFS_1 254 alvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggal 351
                 +++   +++++g+++ + g  +  l+++++l ++algl +l  +++++++++v++li   g+g++f + l++++ ++++  ++ ++++ n ++++gga 
  KKY17688.1 198 SVGLSSASIVSGYIISHRGQYIDVLWFGFSLWTIALGLQILFDPKTNAAVIVVVLLIQGwGVGCIFQPTLVALQAHCSKADRAVVIAVRNYLRQFGGAA 296
                 66666669*******999999999999999999999999999998999999977777777*************************************98 PP

       MFS_1 352 g 352
                 g
  KKY17688.1 297 G 297
                 7 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.0032
       MFS_1 149 gWravfyilaivsllafv.lfllllpeepperkrksp 184
                 g r +f+i+ +++ ++++ +  l++  +    + +++
  KKY17688.1 355 GMRICFIIFVPILGICLLsC--LFI-KDTGLQRAEEK 388
                 78999***********7733..444.33333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 2728.88
//
Query:       KKY17689.1  [L=502]
Description: putative allantoate permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-32  112.0  29.5    2.8e-32  112.0  29.5    1.9  2  MFS_1          Major Facilitator Superfamily
     0.0027   17.7   0.1      0.028   14.5   0.0    2.5  2  PspB           Phage shock protein B
  ------ inclusion threshold ------
      0.018   14.6   3.8      0.095   12.2   0.0    2.8  2  DUF3169        Protein of unknown function (DUF3169)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0  29.5   4.6e-36   2.8e-32       1     353 []      59     425 ..      59     425 .. 0.79
   2 !    4.8   0.6    0.0019        11     128     187 ..     411     477 ..     409     497 .. 0.72

  Alignments for each domain:
  == domain 1  score: 112.0 bits;  conditional E-value: 4.6e-36
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllll..fasslwlllvlrvlqG 96 
                 l+++++l +++ ++lg a+   l++d ++ +++++++ +l++lg++v  +p+  l +r+ +   ++  ++ ++++  l+++  +   +  l++lr++ G
  KKY17689.1  59 LCITYALQSIDKTTLGYAAVFGLSDDTHLVGTQYSWASALFYLGYLVWEYPTNLLLQRL-PINlFMAGTVMIWGAI-LMCSgsV-EDFSGLAALRFFLG 154
                 68999******************************************************.6663666666666666.5555322.55558********* PP

       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpeepperkrkspkeee... 188
                 +++++++p+ + +++ +++++e+++ +g++ ++++lG+++  +++  + +  +    Wr++f+i ++++  ++ + l+ lp +p + k  ++ e+    
  KKY17689.1 155 MFEASINPGTMLIFSMYYKRSEQPLRMGIWIGSAGLGYVISGIASYGIGHIHSslasWRLLFIIWGAITTAWGCILLFTLPGSPLTTKFLKEHERVlvv 253
                 **********************************************88866667888***************887445554444444444444443555 PP

       MFS_1 189 ..kgtgpaplvpawkallkdpvl........willialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr.lgrrrr 276
                     +++   v   k+++kd+++        w+l++ +++    + gl+++  l + + lg+s  l+++l+ + ++ + +i++++a +++ r  ++r +
  KKY17689.1 254 drI-KENGTGV-ENKHFKKDQFFeamldiktWLLFLFAVTSNSPNGGLTSFQSL-IIKGLGFS-TLQTTLIQMPSGGIQLIACPIACFFASRyRNARLA 348
                 432.2333333.369999999888887777784444444444455557777777.5*******.8*************************883455666 PP

       MFS_1 277 lllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeag.tasglfntagslggalgp 353
                 ++l++l+ +la ++ +++ +  s + + lv++ i+f++  ++++++++a+ ++  +    t +++  + ++lg ++gp
  KKY17689.1 349 IMLICLIPFLAGVIGLWTVPE-SRPYGRLVCLWISFTYTATWTLSMSVATANTAGHTKKiTTNAFLLIGYCLGNFIGP 425
                 666666666666666666666.8999999*******9999999999999999965555536666666999*******8 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0019
       MFS_1 128 agfslGailgpllggllasslg......Wravfyilaivsllafv.lfllllpeepperkrkspkee 187
                 a+  +G+ lg  +g+++  +          ++++++ ++ +++++ l++l+ ++++++r+  s+k+e
  KKY17689.1 411 AFLLIGYCLGNFIGPFFFKASQsptydlGVGMMFFCIGIQVICLIsLWVLFWYRNKKRRQETSGKTE 477
                 6778888888888888884444577777566677777777777777888888888888877777776 PP

>> PspB  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.24   1.4e+03      18      36 ..     378     396 ..     376     406 .. 0.82
   2 !   14.5   0.0   4.6e-06     0.028       4      56 ..     442     496 ..     440     497 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.24
        PspB  18 piWLiLHYrskkkrskgls 36 
                  +W+ + Y   +  s ++ 
  KKY17689.1 378 CLWISFTYTATWTLSMSVA 396
                 68********999877665 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 4.6e-06
        PspB   4 flavpliifvlfVapiWLiLHYrskkkrskgl..saedekrLeellekAekleeR 56 
                 +++  + i v+ ++ +W++++Yr+kk+r+++   +++dek  e+   ++  l++R
  KKY17689.1 442 MMFFCIGIQVICLISLWVLFWYRNKKRRQETSgkTEDDEKFYEASFADSTDLQNR 496
                 56778889999999**********9888765411455665555555666666655 PP

>> DUF3169  Protein of unknown function (DUF3169)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.3     0.016        96      11     125 ..     184     293 ..     177     322 .. 0.66
   2 ?   12.2   0.0   1.6e-05     0.095       9      91 ..     411     484 ..     404     493 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.016
     DUF3169  11 mliggliGgiiGfllgafeaekgleelsaalkelllligskilpllliiavlvviis.vvflrkakkllkkwdeeddeeseeey.eqiekklsiglils 107
                  + ++ +G++i+++ ++  +    + l+++   ++++ g+ ++ +    ++l++ +   ++++k  k ++++     + ++e+    ++k++++ +++ 
  KKY17689.1 184 WIGSAGLGYVISGIASYGIGHIHSS-LASWRLLFIIW-GAITTAW---GCILLFTLPgSPLTTKFLKEHERVLVV--DRIKENGtGVENKHFKKDQFFE 275
                 4556777888888876665553222.33333333333.3334444...666666666899999999999999888..4444556577777888888888 PP

     DUF3169 108 svslilsfllilasyslk 125
                  ++ i   ll+l+ ++ +
  KKY17689.1 276 AMLDIKTWLLFLFAVTSN 293
                 888888888888887765 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 1.6e-05
     DUF3169   9 llmliggliGgiiGfllgafeaekgleelsaalkelllligskilpllli..iavlvviisvvflrkakkllkkwdeeddeesee 91 
                 +++lig ++G +iG ++  f+a       ++ + +l +    +++  + i  i++++  +++++ +k +++  + ++edde+++e
  KKY17689.1 411 AFLLIGYCLGNFIGPFF--FKAS------QSPTYDLGVG---MMFFCIGIqvICLISLWVLFWYRNKKRRQETSGKTEDDEKFYE 484
                 56677777777777776..4444......4455555555...2333333344788888888888888888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3172.68
//
Query:       KKY17690.1  [L=358]
Description: putative membrane dipeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-96  322.2   0.0    3.9e-96  322.0   0.0    1.0  1  Peptidase_M19  Membrane dipeptidase (Peptidase family M19)


Domain annotation for each model (and alignments):
>> Peptidase_M19  Membrane dipeptidase (Peptidase family M19)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.0   0.0  2.2e-100   3.9e-96      37     318 ..       2     293 ..       1     294 [. 0.98

  Alignments for each domain:
  == domain 1  score: 322.0 bits;  conditional E-value: 2.2e-100
                    S-HHHHHHHTEEEEEEEEE--C........CCCCCCHHHHHHHHHHHHHHHHHHGTTTEEE-SSHHHHHHHHHTT-EEEEEEEESCGGGTT-HHHH CS
  Peptidase_M19  37 tdlerlraggvsavlfaifvpe........dasyeeavkatleqidlirrlvrknpeqlklvrtaddierakkegkiavllgiegaealgddlall 124
                    td++rlr+g v+++++++ vp+        + +y++  ++++eqidl  rlv+++p++++lv ++d++ +  + gkia+ +gieg+++ g+++  +
     KKY17690.1   2 TDIPRLRDGAVGGQFWSVCVPClrsaenfsTPEYSDMARDAIEQIDLTLRLVESYPDTFQLVSEPDEVPEVYASGKIACSIGIEGLHMAGNSIGII 97 
                    79****************************999*************************************************************** PP

                    HHHHHTTEEEEES-SSS-BSSB-BCCGTT..SSSSB-HHHHHHHHHHHHHT-EEE-TTB-HHHHHHHHHH-SSE.EECCEEBTTTS--TTSB-HHH CS
  Peptidase_M19 125 rafyalGvrvlgltynrnnkfAdgaleek.dedgGLsefGkelVrelNrlgiliDlShlsektfldvlelSkaPvvaSHSnaralcdhpRNltDeq 219
                    raf++lGvr+ +lt+ +nn fAd+++++    ++GLs++G+ +V e+Nrlg+++D+Sh+se+ +++vl+lS+aP+++SHSn++++++ pRN++D++
     KKY17690.1  98 RAFHRLGVRYCTLTHVCNNAFADSSTSKIgPVHNGLSKLGRSAVTEMNRLGMIVDISHVSEDCARQVLRLSRAPIMFSHSNSKSMFNCPRNVPDDV 193
                    ***************************9899***************************************************************** PP

                    HHHHHHTT-EEEE-SSHHHCTTT.S--BHHHHHHHHHHHHHHT-GGGEEE---TTTTSS-BBTBSSGGGHHHHHHHHHHTTS-HHHHHHHHTHHHH CS
  Peptidase_M19 220 lkaiaesgGvvgvtfvpaflkek.aeatledvvdhidyivelaGidhVGlGsDfdgggelpegledvsklpnltaeLlrrgyseadiekilggNfl 314
                    l+ +  +gG+v+vtfvp+++     +at+e v+dh+ yi++++G+dhVGlGsDfdg+  ++ gledv+ +p l++++l+rg se++++k++g+N+l
     KKY17690.1 194 LDMVPVNGGIVMVTFVPEHVAVRrTDATMEMVLDHLFYIANRIGWDHVGLGSDFDGIASVIPGLEDVKCYPTLLQAILDRGASEDQLSKVAGENIL 289
                    *******************654449*********************************************************************** PP

                    HHHH CS
  Peptidase_M19 315 rvle 318
                    rv++
     KKY17690.1 290 RVWK 293
                    ***7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 2407.18
//
Query:       KKY17691.1  [L=333]
Description: putative fungal specific transcription factor domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-15   55.8   0.0    5.2e-15   55.2   0.0    1.2  1  Fungal_trans  Fungal specific transcription factor domain
  ------ inclusion threshold ------
       0.14   12.6   0.0         31    5.1   0.0    2.6  2  CSTF2_hinge   Hinge domain of cleavage stimulation factor sub


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   5.8e-19   5.2e-15     118     265 ..       9     137 ..       6     139 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 5.8e-19
  Fungal_trans 118 gvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlwesddaseetlvetklsneeks 214
                     av l++slgL+r+p ++        + +++  r R+ww++ + D++++l +G ppl++d+q ++p+P  ++ +  +d a++++  e         
    KKY17691.1   9 ASAVALSQSLGLNRDPTHWD------IPDADKALRIRIWWCVVCHDRWCSLAHGTPPLIHDNQHDVPIPTLEQLVRPHDLATNIFAAE--------- 90 
                   57999***************......66666*******************************************************99......... PP

  Fungal_trans 215 rkiasfllaLkkilskiagsllsiekqlqqrdlqseklswveeleraldnW 265
                      ++ l +L ++l++ ++s++ i   +   + +  +  ++++le +l +W
    KKY17691.1  91 --VFQTLCSLTRLLAQCLSSIYHIPAVSPADNID--SGTKLRRLELRLAQW 137
                   ..78***************999997766666666..777777777777777 PP

>> CSTF2_hinge  Hinge domain of cleavage stimulation factor subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0035        31      12      32 ..     202     222 ..     194     224 .. 0.88
   2 ?    4.6   0.0     0.005        45      28      52 ..     287     312 ..     281     325 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0035
  CSTF2_hinge  12 lsapdaIsktLsslppeqlle 32 
                  ++a++ Is+ +++l p+ql +
   KKY17691.1 202 QKAAEDISHFVQNLHPTQLAD 222
                  799***************987 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.005
  CSTF2_hinge  28 eqllellsqlKalaqqnp.sqarelL 52 
                  +q  e+++ lK++  ++p + +++l 
   KKY17691.1 287 AQCGEVMESLKSFTGNDPgAHLEQLV 312
                  6889**************88888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2190.37
//
Query:       KKY17692.1  [L=444]
Description: putativedialkylglycine decarboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-92  308.6   0.0    6.3e-92  308.3   0.0    1.0  1  Aminotran_3    Aminotransferase class-III
  ------ inclusion threshold ------
       0.03   13.5   0.0      0.048   12.8   0.0    1.3  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.3   0.0     7e-96   6.3e-92      10     405 ..      26     429 ..      17     430 .. 0.92

  Alignments for each domain:
  == domain 1  score: 308.3 bits;  conditional E-value: 7e-96
                  CEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHH CS
  Aminotran_3  10 llvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKla 107
                  +++itka+G++l+d d++++lD++s+  + +lGh+hP++v++v++ + +l h+   ++ ++p+++lae l++l+p  l+k f+ n+Gse++e+A+K+a
   KKY17692.1  26 PVIITKAQGTRLYDGDNRQILDFTSGQMSSLLGHSHPEIVAIVRKYVGELDHLL-SNMITQPVIDLAERLARLLPAPLEKSFFLNTGSESTEAAIKMA 122
                  489***************************************************.888899************************************* PP

                  HHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HH.....HHHHHHHHHHHHHHCHTCCCEEEEEE-S CS
  Aminotran_3 108 rkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkene.....eeeaalleelealekkkkdevaAvivEp 200
                  +       +t + +i+af++++HG t+g+ ++t s    +++ gp++p++  +++p+ ++  +++     ++e+ +    + + +++   +aA+i+Ep
   KKY17692.1 123 KL------YTGRFEIVAFSASYHGLTQGSGAATYS--AGRKNGGPSMPGQLAFPAPYAYRSYFRKpdnsyDWEREMDFGWSMIDRQSVGSLAAFIMEP 212
                  **......9**************************..6777789999999999999999998888644444444444444555599999********* PP

                  CETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTS..B--TTTT-HH CS
  Aminotran_3 201 iqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgs..hgsTfgGnpl 296
                  i + gG+  +++++l+++ + c+k ++lli+DE qtG+GrTG++fA +h+++ pD+++l+K l+ Glpl+ v +tae+ +  +  +    +T   +pl
   KKY17692.1 213 ILSTGGILDPPKGYLKRISAECRKRGMLLIMDEAQTGVGRTGQMFAFQHDDIVPDIVALSKTLGCGLPLASVSTTAEIERGCKAAGflWLTTHLNDPL 310
                  **********************************************************************************99999889******** PP

                  HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC......HHHHHHHHHCTEE-EEE...TT.TEEEE CS
  Aminotran_3 297 acavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke......keilkkakekGvlilsa...Gd.nvirl 384
                   +av ++vlei+e+++ +++a e g++l++gL++lq+ky  i+++Rg+Gl+ +ie+ +++++k       +++ ++a + G+ +  +   G+  v rl
   KKY17692.1 311 TAAVGNKVLEIVERDNICQRATERGDQLRKGLSKLQEKYWCIGDIRGRGLLQGIEIISDSKTKApgselgQAVSDRAMARGLSCNIVnlpGMgGVFRL 408
                  *************************************************************8889*****99999******9765441124469**** PP

                  ---TT--HHHHHHHHHHHHHH CS
  Aminotran_3 385 lppliitdeeidelleilkka 405
                  +pp ++++eei+e+l+il +a
   KKY17692.1 409 APPVTVSAEEIEEGLQILDEA 429
                  *****************9887 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.3e-06     0.048     164     296 ..     221     348 ..     216     424 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.3e-06
                    B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHH CS
  Aminotran_1_2 164 vatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaa 259
                    ++++  l+ + + ++k+++ll+ Dea  g   + + +    ++ ++ + +++   lsK +G+ G+ ++ ++ +a++ +  + ++ +++ +++l   
     KKY17692.1 221 DPPKGYLKRISAECRKRGMLLIMDEAQTGVGRTGQMF---AFQHDDIVPDIV--ALSKTLGC-GLPLASVSTTAEIERGCK-AAGFLWLTTHLNDP 309
                    567778999*****************88888886655...455555555565..58999997.888899999999999986.57788889999999 PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS..T CS
  Aminotran_1_2 260 vaaalsdallkqseleemrqrlqkrrkelrdeLael..g 296
                    ++aa+ ++ l++ e ++  qr  +r ++lr++L +l   
     KKY17692.1 310 LTAAVGNKVLEIVERDNICQRATERGDQLRKGLSKLqeK 348
                    9999998888888********************998552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3032.87
//
Query:       KKY17693.1  [L=1053]
Description: putative dna mismatch repair protein pms1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-20   72.6   0.0    8.9e-20   71.0   0.0    1.9  1  MutL_C          MutL C terminal dimerisation domain
    3.7e-20   71.8   0.1    1.8e-19   69.6   0.0    2.2  3  DNA_mis_repair  DNA mismatch repair protein, C-terminal domai


Domain annotation for each model (and alignments):
>> MutL_C  MutL C terminal dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   9.9e-24   8.9e-20       6     147 .]     813     979 ..     810     979 .. 0.89

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 9.9e-24
                 EEEETTTEEEEEE..............TTEEEEEEHHHHHHHHHHHHHHHHCCHSSB-EEEEEEEEEEE--HHHHHHHHHCHHHHHHCT-EEEE..... CS
      MutL_C   6 lgqvhgtyilaen..............edglvlvDqhaAherilyeklkeqlkeeelksQpLliPlvlelspeeaalleehkeeLaklGfelee..... 85 
                 +gq++ ++ila +              +d+l+++Dqha +e++++e+l++++       Q+L++P  lel++ e++++ e+   L+k+Gf +       
  KKY17693.1 813 IGQFNLGFILAVRpsvlpcddnftkrrNDELFIIDQHASDEKYNFERLQQETVV---GNQRLVLPKPLELTAVEEEIIIENVPVLEKNGFLVDIdisgd 908
                 677777777776666666666666666899*******************99997...79*********************************9888888 PP

                 .-STTEEEEEEEECCCTTTSHHHHHHHHHHHHCCCSS.......-H.-HCCHHHHHHHHCTTSSSSSS--- CS
      MutL_C  86 .fgpnslivravPallrqqnleelirelleelaekgk.......es.leekleellatmachssvkagrrl 147
                  + ++++++ + P+ ++  + +++++el++ l+e +        +   ++k+++++a++ac+ss+++g++l
  KKY17693.1 909 ePIGQRCKLISLPLSKEVVFDTRDLEELIHLLSETPPttttpinKIpRPSKVRKMFAMRACRSSIMIGKTL 979
                 88899*****************************999999999633689******************9876 PP

>> DNA_mis_repair  DNA mismatch repair protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.73   6.6e+03      50      68 ..     105     123 ..     105     132 .. 0.84
   2 !   69.6   0.0     2e-23   1.8e-19      10     117 ..     192     302 ..     184     304 .. 0.85
   3 ?   -2.9   0.0      0.57   5.1e+03      21      56 ..     842     877 ..     835     906 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.73
                     EE--HHHHHHHHHHHHCCS CS
  DNA_mis_repair  50 lvkskelkkaireaYkell 68 
                     +v++kel+k i++ Y +++
      KKY17693.1 105 PVRRKELAKNIKREYGKVI 123
                     799**********999765 PP

  == domain 2  score: 69.6 bits;  conditional E-value: 2e-23
                     HCCEEEEEEEETT..EEEEEEEE-CC..G-BTTGGEEEEEETTEEE--HHHHHHHHHHHHCCSSSSSB-EEEEEEEESSGGEE-TSSTT----EE CS
  DNA_mis_repair  10 aenlleiekeeeq..lkieGfiskpe..lsrskrdkqflfvNgRlvkskelkkaireaYkellpkgrypvvvLnleidpeevDvNvhPtKreVrf 100
                     ++++ + +++  +  +  +G is+p     r+++d+q++fvN+R+   ++++kai+e+Yk  ++ ++ p+v++ l++d+++ DvNv P+Kr + +
      KKY17693.1 192 SQKMASTDEDGTTskIIARGHISRPIfgEGRQTPDRQMFFVNSRPCGLPQITKAINEVYK-SFNVSQSPFVFVDLRMDTKAYDVNVSPDKRTILL 285
                     4555555533333449999******62257889***************************.89999***************************** PP

                     TTHHCHHHHHHHHHHHH CS
  DNA_mis_repair 101 qdeeevieaieealkea 117
                     +d+ ++ie+++++l e+
      KKY17693.1 286 HDSANLIESLKSSLVEL 302
                     ***********999776 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.57
                     TTEEEEEEEE-CCG-BTTGGEEEEEETTEEE--HHH CS
  DNA_mis_repair  21 eqlkieGfiskpelsrskrdkqflfvNgRlvkskel 56 
                     e + i+   s+++++ ++ ++++++ N+Rlv  k l
      KKY17693.1 842 ELFIIDQHASDEKYNFERLQQETVVGNQRLVLPKPL 877
                     447777788888888888888888889999987755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1053 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1040  (0.0580066); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.43
# Mc/sec: 7342.39
//
Query:       KKY17694.1  [L=349]
Description: hypothetical protein UCRPC4_g05327 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1390  (0.077528); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2492.07
//
Query:       KKY17695.1  [L=1127]
Description: putative pre-mrna-processing atp-dependent rna helicase prp5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-49  165.7   0.0    1.8e-48  164.6   0.0    1.6  1  DEAD        DEAD/DEAH box helicase
    7.5e-28   97.1   0.0    2.4e-27   95.5   0.0    1.9  1  Helicase_C  Helicase conserved C-terminal domain
     0.0024   17.0   2.4     0.0049   16.0   2.4    1.4  1  PDCD7       Programmed cell death protein 7
     0.0066   16.5   0.0      0.019   15.0   0.0    1.7  2  ResIII      Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
       0.33   10.3   0.0       0.33   10.3   0.0    2.0  2  CMS1        U3-containing 90S pre-ribosomal complex subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.6   0.0   5.1e-52   1.8e-48       1     175 [.     521     694 ..     521     695 .. 0.94

  Alignments for each domain:
  == domain 1  score: 164.6 bits;  conditional E-value: 5.1e-52
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS...TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet...kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldn 96 
                 t+iQ +a+p+i++g+dv++ a+TGsGKT afl+p+++++ ++   +  +gp  li++PtreLa q+++++k f+k ++lr+++ +gg + +dq+++l++
  KKY17695.1 521 TSIQCQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQkplEALDGPIGLIMTPTRELATQIHRECKPFLKALNLRAVCAYGGAPIKDQIAELKR 619
                 78*************************************88899999**************************************************99 PP

                 TCSEEEEEHHHHHHHH..HCTS.SHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxx..xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  97 gvdivvgtpgrlddll..stgk.lnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 g++ivv tpgr++dll  ++g+  nl++v+++VlDEadr+ d+gf++++ +il ++       + +rq++++SAT+p++++ 
  KKY17695.1 620 GAEIVVCTPGRIIDLLaaNSGRvTNLRRVTYIVLDEADRMFDMGFEPQVMKILGNI-------RPDRQTVLFSATFPRQMEA 694
                 9*************99884455377*******************************.......35678*********88775 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.0   6.6e-31   2.4e-27       2     111 .]     730     844 ..     729     844 .. 0.91

  Alignments for each domain:
  == domain 1  score: 95.5 bits;  conditional E-value: 6.6e-31
                 HHHHHHHHH.....HHTTTTSEEEEEESSHHHHHHHHHH..HHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSS CS
  Helicase_C   2 kleallell.....kleeeggkilifvntidrlekvkll..lekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdl 93 
                 k+++llell     + ++e++++lifv ++d+++   ll  l +kg+ +  +hg   q +r+ ++++f++g + vLiat+va+rG+d+++++lV+n+d+
  KKY17695.1 730 KFHRLLELLgnlyaEDKNEDDRALIFVDRQDSAD--GLLrdLMQKGYPCMSIHGGKDQIDRDSTIDDFKNGVFPVLIATSVAARGLDVKQLKLVVNYDA 826
                 6677777777778999*****************9..4443334789***************************************************** PP

                 SSSHHHHHHHHTTSSSTT CS
  Helicase_C  94 prnvtsyiqriGRtgRag 111
                 p  +++y++r+GRtgRag
  KKY17695.1 827 PNHLEDYVHRAGRTGRAG 844
                 ****************97 PP

>> PDCD7  Programmed cell death protein 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   2.4   1.4e-06    0.0049      95     140 ..      94     139 ..      90     146 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.4e-06
       PDCD7  95 keerraereakidkWrrkqiqeveekkkeqelkeaadavLseVrkk 140
                 +e+++a r a+i++W++kq +e e+k+ke     +a ++L+e+ kk
  KKY17695.1  94 EEQQKAARLARIQAWKEKQAAEREKKQKELDAAGSARSILAEIDKK 139
                 56777999***********************************999 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.2e-06     0.019      30     170 ..     540     689 ..     520     690 .. 0.75
   2 ?   -3.7   0.0       2.9     1e+04      51      76 ..     746     771 ..     738     792 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.2e-06
                 EESTTSTHHHHHHHHHHHH-S...........-EEEEESSHHHHHHHHHHGGGGTGG.....GEEEESSS-B--.......-SEEEEEHHHHHHTH... CS
      ResIII  30 kmaTGtGKTlvaaklierllk.kgkee.....kflflvprkslleqtleefkkflseayke.igkkvsgdkkkakekdstnkkilvttiqsldadseee 121
                 ++ TG+GKT+  +  + r  k +++ e       l++ p+++l  q  +e k fl+  + + ++       k++ ++ +  ++i+v t  ++   +   
  KKY17695.1 540 VAKTGSGKTIAFLLPMFRHIKdQKPLEaldgpIGLIMTPTRELATQIHRECKPFLKALNLRaVCAYGGAPIKDQIAELKRGAEIVVCTPGRIIDLL--- 635
                 678*********6666665550444449999999**********************99888744443333333345568889********999999... PP

                 .....HHHTTT-S.EEEEETGGGTTS....TTTHHHHHT---.SEEEEEESS-S CS
      ResIII 122 eeeseellrdrfd.viiiDEaHrlgak...kswreilekfke.avllglTATpe 170
                   +s +  + r   +i+ DEa r+ ++    ++ +il ++++    + ++AT++
  KKY17695.1 636 AANSGRVTNLRRVtYIVLDEADRMFDMgfePQVMKILGNIRPdRQTVLFSATFP 689
                 333333333333359***********966558888888886647778899*987 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.9
                 .....-EEEEESSHHHHHHHHHHGGG CS
      ResIII  51 kgkeekflflvprkslleqtleefkk 76 
                 k++ +++l++v+r++  + +l+++++
  KKY17695.1 746 KNEDDRALIFVDRQDSADGLLRDLMQ 771
                 44455999999999888888777665 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   1.9       2.1   7.4e+03      12      31 ..     103     122 ..      93     141 .. 0.67
   2 ?   10.3   0.0   9.1e-05      0.33     166     208 ..     610     654 ..     606     673 .. 0.80

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2.1
        CMS1  12 nkekgkkkksekkRskkker 31 
                    ++ k+k+  +R+kk+++
  KKY17695.1 103 ARIQAWKEKQAAEREKKQKE 122
                 45566777777777777665 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 9.1e-05
        CMS1 166 leesvtylkksrigiavGtpgRildLleeeslsvdeLk...rivlD 208
                 ++++++ lk+    i v tpgRi+dLl  +s +v +L+   +ivlD
  KKY17695.1 610 IKDQIAELKRG-AEIVVCTPGRIIDLLAANSGRVTNLRrvtYIVLD 654
                 57888888876.57899**********9999888888611156777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.49
# Mc/sec: 6935.12
//
Query:       KKY17696.1  [L=497]
Description: putative aldehyde dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     5e-182  605.5   0.3   5.7e-182  605.4   0.3    1.0  1  Aldedh    Aldehyde dehydrogenase family
     0.0066   15.5   0.0      0.013   14.6   0.0    1.4  1  LuxC      Acyl-CoA reductase (LuxC)
  ------ inclusion threshold ------
       0.14   11.6   0.0       0.27   10.6   0.0    1.4  1  DUF1487   Protein of unknown function (DUF1487)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  605.4   0.3  9.5e-186  5.7e-182       2     462 .]      28     488 ..      27     488 .. 0.98

  Alignments for each domain:
  == domain 1  score: 605.4 bits;  conditional E-value: 9.5e-186
                 ET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH.HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHH CS
      Aldedh   2 veses.etievinPatgeviakvpaataedvdaavaaAkeafk.awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvl 97 
                 v++++ +t+e+inPat+++i++v++ata+dvd av+aA++af+ +w k +  +R +++ k+adl+e+++e+la+le+l++Gk +a ar  +v+ + d++
  KKY17696.1  28 VKGAEgKTFETINPATEKPICSVHEATAADVDIAVSAARKAFEgGWDKETGLNRNKLMVKLADLMERDQENLAQLESLDNGKAIAVARVaDVPMSYDCI 126
                 66666578***********************************89****************************************************** PP

                 HHHHHHHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCH CS
      Aldedh  98 ryyaelaeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsev 196
                 ryy ++a+k++g+v+  ++++l+++r eP+Gvvg+I+PWNfPll++awk+ pa+aaGN+vv+K ae+tpl+al++a+l++eag+P+gv+nv++g g+++
  KKY17696.1 127 RYYGGYADKIHGKVIDPDPDHLCYTRMEPMGVVGQIIPWNFPLLMWAWKIGPAIAAGNCVVIKSAEQTPLTALYMAKLIKEAGFPPGVINVLSGFGKTA 225
                 *************************************************************************************************** PP

                 HHHHHH-TTESEEEEES-HHHHHHHHHHHH.CTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHH CS
      Aldedh 197 gealvehpevdkvsftGstevgrkiakaaa.knlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaak 294
                 g+a+++h ++dk++ftGst vgr+i+ aaa +nlk+vtlElGGk+p+iv++daD+++a++++ +g+f+n GQ+C+a+sr++vqe+iydefv++++++a+
  KKY17696.1 226 GAAIAAHMDIDKIAFTGSTLVGRQIMVAAArSNLKKVTLELGGKSPNIVFKDADIESAISWVNFGIFFNHGQTCSAGSRVFVQEDIYDEFVKRFTKRAQ 324
                 ****************************6659******************************************************************* PP

                 T--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSS CS
      Aldedh 295 klkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdt 393
                 +  vg+p +++t  GP++s+ q+++v++y++ +k++gak+ +Gg   e++ + gyf++Pt+++nv++dm+i++eEiFGPV s+ +fkde+++i++aN+t
  KKY17696.1 325 ENVVGEPHKPETFQGPQVSQVQFDRVMGYIDAGKKDGAKVETGG---ERHGDVGYFIKPTIFSNVHEDMKIIKEEIFGPVCSIASFKDEDDVIAKANKT 420
                 ********************************************...7899************************************************ PP

                 SEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 394 eyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 eyGLaag++t + +++ +v++ l+aG+v++N++++ +++  pfgG+k+Sg+G+e g+++l +y++ kt+
  KKY17696.1 421 EYGLAAGIHTYNSNTIAKVSSGLKAGTVWVNTYNNLHHQL-PFGGYKHSGIGKELGEAALANYMNSKTI 488
                 *********************************9999999.**************************96 PP

>> LuxC  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.1e-06     0.013      83     262 ..     149     321 ..     141     360 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.1e-06
        LuxC  83 syekaqprglvlhvlsgNvpllp.vmsilqglLvknvnllkvSssdpflaaallksladvdenhtladslsvvyfksgdtkleeeivqnaDvvvawGge 180
                  y ++ p g+v ++++ N pll   + i  ++ ++n+ ++k+  + p +a  ++k +++      + + ls    k    +++  +  + D++   G+ 
  KKY17696.1 149 CYTRMEPMGVVGQIIPWNFPLLMwAWKIGPAIAAGNCVVIKSAEQTPLTALYMAKLIKEAGFPPGVINVLSGF-GKTAGAAIAAHM--DIDKIAFTGST 244
                 6999****************9873699********************************99987787777755.366667777777..99999999999 PP

        LuxC 181 eaikaise.klkpgkq..likfGakvSfavvdkealeeealdkaaeraAkDiivfdQqAClspqvvfvekddkieidefaeaLaa 262
                    + i    ++ + +   ++ G k S  +v k+a    ++++a+  +   i +   q C++   vfv++d    +def+++  +
  KKY17696.1 245 LVGRQIMVaAARSNLKkvTLELGGK-SPNIVFKDA----DIESAISWVNFGIFFNHGQTCSAGSRVFVQED---IYDEFVKRFTK 321
                 8887777755555555115567777.666676778....8*************999*************77...78999888754 PP

>> DUF1487  Protein of unknown function (DUF1487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.5e-05      0.27       9      56 ..     273     322 ..     269     336 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.5e-05
     DUF1487   9 vifedgDlnsalealves..lkePfaegavatvlveesirdefvervrsk 56 
                 ++f+d+D++sa+  +     +++   + a   v+v+e i defv+r  ++
  KKY17696.1 273 IVFKDADIESAISWVNFGifFNHGQTCSAGSRVFVQEDIYDEFVKRFTKR 322
                 89**********98865411578888899999*************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 3113.56
//
Query:       KKY17697.1  [L=453]
Description: putative pyoverdine dityrosine biosynthesis [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-67  228.1   0.0    1.9e-67  227.6   0.0    1.2  1  DIT1_PvcA  Pyoverdine/dityrosine biosynthesis protein


Domain annotation for each model (and alignments):
>> DIT1_PvcA  Pyoverdine/dityrosine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.6   0.0   1.1e-71   1.9e-67       1     218 [.     159     372 ..     159     376 .. 0.95

  Alignments for each domain:
  == domain 1  score: 227.6 bits;  conditional E-value: 1.1e-71
                 HHHHHHCT--EEEEE-------S-T.TTSS-SS--HHHHHHHHHHHHHHHHHHHHSTT-EEEEEE--HHHHGGGTT--HHHHHHHHHHHHHHHHHCT-T CS
   DIT1_PvcA   1 veefvsrkepielvLPAFPcKSpnk.eKvlgklPDkgEelaLerLnklceeieevYepGakltiisDghvfsDligvddeevdaYgeeLrelakekgle 98 
                 v+++v+++ p+ lvLPAFP+KS nk eKvlg+lPD+gE l+L rLn+lce+i+++Y+pGa++ti+sDg+v++Dl+g++deev++Yg++Lr++  e+g++
  KKY17697.1 159 VRKAVDAGIPVPLVLPAFPWKSVNKqEKVLGALPDLGEVLGLGRLNNLCEDIQQIYPPGARVTITSDGLVYNDLLGISDEEVFNYGAALRRIPGEQGYQ 257
                 68899********************************************************************************************** PP

                 TEEEE-GGG-GGGGGG..............TT-HHHHHHHHHHHH---HHHHHHHHTTSHHHHHHHHHHHHHHHHHH..--TT--S.-HHHHHHHHHHH CS
   DIT1_PvcA  99 diefvrlkdlleseeeaeeeseellseeeyleeaeklrkeLlksfgedeeelrkeikededtlalYrgfskflleDlaslpeakkl.skkklkkevkkv 196
                 +i+f+r+++ll      + ++++++++eeyle++ ++r+ L+++f ++++ ++++i+ed+d++++Y+g+ kfl +Dl++ p ++ +  k+++++ vk+v
  KKY17697.1 258 NIDFIRIMNLL------GLTDQATMTKEEYLETVGSTRDTLVEKFLDPTFIATDAIEEDRDINLTYCGYLKFLAKDLRHSPVTAGIvGKNEYRRVVKRV 350
                 ***********......566778899***************************************************7666666642899********* PP

                 HHHHHHHHHHHHHHHHHHSTTS CS
   DIT1_PvcA 197 akemikRnkaysnlvelkfpdh 218
                 a+ mi+R+ka+++++e ++pdh
  KKY17697.1 351 AQDMITRGKAFAAAIEYALPDH 372
                 ********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3104.32
//
Query:       KKY17698.1  [L=1098]
Description: putative mfs monocarboxylate transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-18   65.7  58.9    4.1e-17   62.2  51.5    2.4  2  MFS_1            Major Facilitator Superfamily
    6.2e-13   48.9   0.0    1.1e-12   48.1   0.0    1.3  1  DJ-1_PfpI        DJ-1/PfpI family
    0.00014   22.3   1.2       0.54   10.9   0.0    2.9  2  HMG_box_2        HMG-box domain
  ------ inclusion threshold ------
      0.021   15.2   2.7        5.9    7.4   0.0    2.7  2  HMG_box          HMG (high mobility group) box


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2  51.5     9e-21   4.1e-17       5     353 .]      82     415 ..      79     415 .. 0.85
   2 !   11.0   9.3   3.1e-05      0.14     209     324 ..     366     486 ..     365     497 .. 0.74

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 9e-21
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllll.fasslw.lllvlrvlqGlgag 100
                 ++++++++   + ++ +++ +++  s s+++++ ++  ++ ++   + Gr  d  G+ r ++  g l+ ++g ++l+ +a ++  l++   +l G+g g
  KKY17698.1  82 VIFNTFGYIGSWGFFESYYVDSFDTSFSAVSWVGSIQIFLVFFIGTFSGRALDA-GHLRlTVASGCLFQIAG-IFLTsLAKNYGfLFFTQGILVGVGDG 178
                 57888999999999999999*********************************9.88886777777777777.55554889999999************ PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpa 199
                 ++f  +++li+ +++++ r++a+++++ag++ G i+ p+++ +++ s+g  ++  +++ v++    +++ ll ++ ++r+              plv+ 
  KKY17698.1 179 LAFCPMISLISTYYTDRTRALAVSFAAAGAATGGIVFPAIAKYMLGSIGIVWTLRVMGCVFVATSAIAVSLLHVRVKPRESG------------PLVE- 264
                 *****************************************************99999999999887777775555554444............6788. PP

       MFS_1 200 wkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavts 298
                 w+a+   p++++++ ++l  + g++++++++ ++ ++  + +   ++ +l++++  +g++++++ ++l++r +    l+++++++++a ++++++ + +
  KKY17698.1 265 WEAFEEMPYVLFCVGTFLALW-GLYFAYYYVSIFGKTIIHVP-SDQGFYLIMAINGIGIFGRIIPAWLVTRCSD--VLTVFIPVTFMAGVMMYFWMFVT 359
                 999999**8875666666665.9999999*************.5777777888888889************776..77777777777777777777777 PP

       MFS_1 299 savllllvlvliGfglgfvfpsllalasdla.ppeeagtasglfntagslggalgp 353
                 ++++l++ ++l+Gf++  v++++   + +l+  ++++g  +g + t+ s++++ gp
  KKY17698.1 360 TKSALVVWVLLYGFFANAVQSLFVGGVGSLTkDKQKMGVRIGMVFTIISFACLTGP 415
                 88888888999999777777777777777775889***************999987 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 3.1e-05
       MFS_1 209 lwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllll.. 305
                 +w+ll++++ ++ + s+++  + +++++  +++  + +g+++ +++++++ + ++ag+l+dr    +    +++++++++ ++al++++s + +++   
  KKY17698.1 366 VWVLLYGFFANA-VQSLFVGGVGSLTKDKQKMG--VRIGMVFTIISFACLTGPPIAGALIDRRDGDFLYAQIFGGTVMVSGSVALIGAASAKNVVIDva 461
                 687888888885.77779999999999999999..89998899999999999*************9**********************96666666666 PP

       MFS_1 306 ........vlvliGf.glgfvfpsllal 324
                         +   + + glg++++++  +
  KKY17698.1 462 kravytgiA---CQClGLGIYMSCAPQV 486
                 764442113...3333444444443333 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   2.4e-16   1.1e-12       6     165 .]     511     686 ..     507     686 .. 0.83

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 2.4e-16
                 EEETTBEHHHHHHHHHHHHH....TTEEEEEEESS........TSEEEETTS..EEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHH CS
   DJ-1_PfpI   6 lladgvedvElivpvdvlkr....agikvdvvsvd........keevkgsrG..lkvtvdaslddvkaaeyDalvlpGGragperlrenekvvelvkef 90 
                 l+  g++ ++++ p+d+l++     +++++++s d         + v+ s     +v ++++l   +a   D+l++pGG  + + +++   +v++++e 
  KKY17698.1 511 LIYAGFQAMDIFGPLDALNSlsrsHTMTLSLISADlgpvmtlnPDAVTASPAftQSVLPTHTLV--EAPVVDILIVPGGLGNRDPIAMA-PYVDFIRER 606
                 77889**************655568999999999966666666556666665556666666666..57788**********99999986.899999988 PP

                 H..HTT-EEEEETTTHHHHHHTTTTTTSEE--SGGGHHHH..HHTTSEE-SS.SEEEETTEEEESSGGGHHHHHHHHHHH CS
   DJ-1_PfpI  91 a..ekgklvaaICagpqlLaaagvlkgrrvTsypavkdkl..ekagakyvdk.rvvvdgnlvTsrgpgaaiefalellee 165
                     + + v ++C+g+ l a++g ++g r+T++++v + +  + +  ++v   r v dg++ +s+g  a  +++l ++e+
  KKY17698.1 607 WadPELRHVLSVCTGAALVARTGCVDGMRATTNKKVFKWVrgQRKEVDWVGHaRWVEDGKWWSSSGISAGTDMMLGYIEQ 686
                 73345578*****************************9997677777888889*********************999885 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.2   0.00044         2      33      65 ..     945     977 ..     935     984 .. 0.87
   2 !   10.9   0.0   0.00012      0.54       9      52 ..    1032    1072 ..    1027    1074 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00044
                 HHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHH CS
   HMG_box_2  33 aevsklcsekWkalseeeKekYeekAkedkkry 65 
                  e ++++ +k ++ls +e+e Y+  A++ k++ 
  KKY17698.1 945 VEGVRAARQKYQNLSLSEREHYNHIANQNKQET 977
                 566788999*********************985 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00012
                  -HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHH CS
   HMG_box_2    9 nAYalfvqemipelkrkGnpviglaevsklcsekWkalseeeKe 52  
                  n Y l+ q + +    +    + +ae  kl+s++Wk+l+e++K+
  KKY17698.1 1032 NQYSLYTQARNASGDLN---GMTIAERAKLISSEWKSLRESDKK 1072
                  56666666555544333...57899*****************97 PP

>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   1.2    0.0027        12      36      68 ..     952     984 ..     948     985 .. 0.89
   2 ?    7.4   0.0    0.0013       5.9       3      48 ..    1029    1072 ..    1027    1073 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0027
                 HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box  36 gekWkalseeeKkkYeekaekekaryekekpey 68 
                  +k+++ls +e+++Y   a++ k++   +++++
  KKY17698.1 952 RQKYQNLSLSEREHYNHIANQNKQETALAYQKW 984
                 589*********************998888876 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0013
                  SS--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHSHHHHHH CS
     HMG_box    3 RplsafflfskeqraklkaenPelknaeiskklgekWkalseeeKk 48  
                   pl+++ l+ ++  a+      ++++ae +k ++ +Wk+l e++Kk
  KKY17698.1 1029 QPLNQYSLYTQARNAS--GDLNGMTIAERAKLISSEWKSLRESDKK 1072
                  5889999998775554..5667999********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1098 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1931  (0.107703); expected 358.6 (0.02)
Passed bias filter:                      603  (0.0336327); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.89u 0.27s 00:00:01.16 Elapsed: 00:00:00.47
# Mc/sec: 7078.05
//
Query:       KKY17699.1  [L=1195]
Description: putative fungal specific transcription factor domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-19   67.8   1.2    9.4e-19   67.5   0.1    1.7  2  Fungal_trans  Fungal specific transcription factor domain
    1.2e-07   31.3   0.2    2.5e-07   30.3   0.2    1.5  1  CorA          CorA-like Mg2+ transporter protein
  ------ inclusion threshold ------
      0.051   13.6   0.7      0.096   12.7   0.7    1.3  1  HisKA_7TM     N-terminal 7TM region of histidine kinase


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.1   1.6e-22   9.4e-19       2     171 ..      59     223 ..      58     247 .. 0.94
   2 ?   -3.1   0.1      0.52   3.1e+03     212     231 ..    1074    1134 ..    1049    1156 .. 0.44

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 1.6e-22
  Fungal_trans   2 drffsnfhpqfpilhkpsflpkt..ssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqs 96 
                   ++f +n++p++ ilh p+  +    +s++  k a+ +++ll+ i+ ++ +++++ + +s + +t++++   ++   +++li ++f s++  + ilq+
    KKY17699.1  59 QTFVENVNPLIKILHAPTMQKRLldYSTSLDKVAKDEEALLFGIYLTAVQSMSDFECQSLFGQTKSRSIRKYYNATKNALIRAEFMSCPG-IVILQA 154
                   6899******************9999***************************************9977778888999999888888888.****** PP

  Fungal_trans  97 LlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklG 171
                   + l+ l    +++    +++ gvavrl ++lgLhr+    g      l ++e e+rrRlwwa F +D+t a  +G
    KKY17699.1 155 FSLYLLTMRHYTEPGCLWMLTGVAVRLGQRLGLHRDGLELG------LLPFETEMRRRLWWALFGMDTTAAEFFG 223
                   *****************************************......66666*****************998887 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.52
  Fungal_trans  212 eksrkiasfllaLkkilsk.........................................i 231 
                      +++++   + L+ ++s+                                         +
    KKY17699.1 1074 DLHPDFSELQSQLSDLISQtdkilsfaigivsieesrkgieqnsnvarltyialvfvplsF 1134
                    3333333333333333333333444333333333335555555555555554445555553 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.2   4.2e-11   2.5e-07     189     287 ..    1074    1167 ..     993    1172 .. 0.75

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 4.2e-11
        CorA  189 edkeylrdlldelerllemlealrerleslqdtyssllserlNrvmkvLTvltaiflPlTlitGiyGmNfkglPelewsygypfvlllglmallail 285 
                  + ++ +++l+++l+ l+ +++ + + +  + ++  s+   ++N ++ +LT ++ +f+Pl+++++++ m ++ l ++++ ++ +f+    +++ +++l
  KKY17699.1 1074 DLHPDFSELQSQLSDLISQTDKILSFAIGIVSIEESRKGIEQNSNVARLTYIALVFVPLSFLASLFSMTTN-LSQMKQTFWVYFA----VAIPTSLL 1165
                  23345666777777777777777777777777777777777***************************999.9988888855554....33333333 PP

        CorA  286 ll 287 
                  ll
  KKY17699.1 1166 LL 1167
                  32 PP

>> HisKA_7TM  N-terminal 7TM region of histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.7   1.6e-05     0.096      56     107 ..    1118    1170 ..    1097    1181 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.6e-05
   HisKA_7TM   56 lwaklqylgivfipvlwllfaleytgkrrwltrrrlallll.vpvltlilvlt 107 
                    a+l+y+++vf+p+++l+  +  t + + ++++ ++++++ +p  +l+lvl 
  KKY17699.1 1118 NVARLTYIALVFVPLSFLASLFSMTTNLSQMKQTFWVYFAVaIPTSLLLLVLA 1170
                  56899*********************8788999999999999**999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.51
# Mc/sec: 7035.21
//
Query:       KKY17700.1  [L=448]
Description: putative mfs multidrug [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-05   23.2  14.6      2e-05   23.2  14.6    1.7  1  TRI12            Fungal trichothecene efflux pump (TRI12)
     0.0076   15.2  39.2      0.029   13.3  34.8    3.0  2  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.042   14.2   1.2       0.18   12.2   1.2    2.1  1  Phage_holin_5_1  Bacteriophage A118-like holin, Hol118
        4.7    6.8   8.8        2.9    7.5   3.3    2.7  3  DUF4131          Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2  14.6   4.4e-09     2e-05     199     473 ..      54     320 ..      43     327 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 4.4e-09
       TRI12 199 fyiyiitsaiavllivvwyyppsfaqlhgkkvrkreelakldwigiilvivgvslfllgvswggkpnspwnsakviglissglgslvvfalyevygkpv 297
                 +y+ + + a++ +l++  y+p  +a+   k +   e++a+ld +g i+ ++g+  +ll + wgg     w+ a++i l+    g l+v  l+    +p 
  KKY17700.1  54 LYVNLPIGAVSFVLVIFAYHPQPIAK---KEMPITEKIARLDPVGTIFFMAGTICLLLALQWGGST-YAWKNARIIVLFIL-TGILLVAWLFVESRNPG 147
                 566777889999999999**987764...78889999***************************86.57999999988764.678888889988999** PP

       TRI12 298 rpivppalfkdtrgfvcillissimgamnlslviiypqqvvnifgss.lknweetawmsatasfgtgagvvvlgslfhlvrhirwqilvgalwltaflg 395
                   ivpp +    r ++  ++ s  +g   ++l+   p     i g+  lk       m+ +  +      vv  + +++  +    i  g++  +   g
  KKY17700.1 148 TAIVPPRISL-QRTVLSAMINSFFIGGSFMTLIYYLPIWFQSIKGANpLKS----GVMTIAMIVPQVIASVVGAKTVQVTGYYNPWIYAGSILTSIGSG 241
                 ******9864.68899999999999*9999999999988888888642555....44555444444445555555666666666667888876666666 PP

       TRI12 396 amssvn.rdnknaaialsvlsgfvvawaqditmllvqfittdedlgvafavvaaarpfagsiftaafislysnrypkel 473
                  + +      +   i   v+ g+ ++   +   l vq   +  d+ + ++++  +  + gsif +   +l+sn   + l
  KKY17700.1 242 LFITFTpTTAHPKWIGYQVIYGLGLGCGFQQGTLAVQNTLSGPDVNIGVSIIILSLTLSGSIFVSVGQTLFSNTLAHHL 320
                 5555441445567799999999999888888889999988888888888999999999999999888888888766554 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3  34.8   6.4e-06     0.029     142     330 ..      41     282 ..      34     307 .. 0.67
   2 ?   -0.4   1.0     0.097   4.4e+02     100     130 ..     329     359 ..     293     384 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.4e-06
       MFS_1 142 glla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeee................................................... 188
                 gl++  ++ +  + y++ ++++++fvl+++ +   p ++k  + +e+                                                    
  KKY17700.1  41 GLISvYLAAFIISLYVNLPIGAVSFVLVIFAYHPQPIAKKEMPITEKIarldpvgtiffmagticlllalqwggstyawknariivlfiltgillvawl 139
                 444433334666778888888888887666664444444444444444777888888888888888888888888887777777777777777777777 PP

       MFS_1 189 ...kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrlsdrlgrrrrllla 280
                    ++  ++++vp  ++ l + vl +++i +++++  f++l ++lp+++q+  g +    g+++++  + ++++++   ++++++ ++ +g  ++++ a
  KKY17700.1 140 fveSRNPGTAIVP-PRISLQRTVL-SAMINSFFIGGSFMTLIYYLPIWFQSIKGANplksGVMTIA--MIVPQVIA---SVVGAKTVQVTGYYNPWIYA 231
                 7777777777777.3334444444.567777777779999****************7777777777..77777777...8888888899***9999999 PP

       MFS_1 281 llllllaalglallavtssavllll.vlvliGfglgfvfpsllalasdlap 330
                 +++l+ +  gl+++ ++++a+  ++   v++G+glg+ f   + ++++ ++
  KKY17700.1 232 GSILTSIGSGLFITFTPTTAHPKWIgYQVIYGLGLGCGFQQGTLAVQNTLS 282
                 999999999999988887777766655666666666665555555555543 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.097
       MFS_1 100 galfpagaaliadwfpkeergraigllsagf 130
                  a++ aga++i+d++p ++ + ++  ++ag+
  KKY17700.1 329 EAIVNAGATAIRDIVPASKLSEVLVAYNAGI 359
                 4566677777777777777777777777765 PP

>> Phage_holin_5_1  Bacteriophage A118-like holin, Hol118
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.2   4.1e-05      0.18      11      83 ..     176     248 ..     163     254 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.1e-05
  Phage_holin_5_1  11 mtflvvvtpvfvqaikktelvpskwlptvsilvgailgal..atsldgsgslatmiwagalagaggtglfeqftn 83 
                      mt l+   p++ q+ik ++ + s  + t++++v  ++ ++  a +++ +g     i+ag++  + g+glf  ft 
       KKY17700.1 176 MT-LIYYLPIWFQSIKGANPLKSGVM-TIAMIVPQVIASVvgAKTVQVTGYYNPWIYAGSILTSIGSGLFITFTP 248
                      44.55678***********9999876.5555555444443234567888999*********************96 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.055   2.4e+02      11      52 ..      40      76 ..      31      86 .. 0.64
   2 ?    7.5   3.3   0.00065       2.9       8      69 ..      95     161 ..      91     172 .. 0.74
   3 ?   -2.1   0.0      0.58   2.6e+03      38      44 ..     261     267 ..     222     321 .. 0.55

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.055
     DUF4131 11 alllllllllllllrrrprrrvllllllllllallgfalrap 52
                a l+ ++l++++      +  v l ++++ +++++++++++p
  KKY17700.1 40 AGLISVYLAAFI-----ISLYVNLPIGAVSFVLVIFAYHPQP 76
                333333333333.....4677788888888888888888776 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00065
     DUF4131   8 vllalllllllllllllrr.....rprrrvllllllllllallgfalrapqpnandlsqllesgqev 69 
                  ++++++ +++lll+l++       ++ r+++l++l  +l+++++++++++p++   ++ ++++++v
  KKY17700.1  95 GTIFFMAGTICLLLALQWGgstyaWKNARIIVLFILTGILLVAWLFVESRNPGTAIVPPRISLQRTV 161
                 4566666666677676666788988888889999999999999999999999988777777754444 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.58
     DUF4131  38 lllllal 44 
                 ++ l ++
  KKY17700.1 261 IYGLGLG 267
                 2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.51
# Mc/sec: 2664.97
//
Query:       KKY17701.1  [L=1120]
Description: putative ubiquitin conjugating [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-23   82.0   0.0    5.5e-23   81.2   0.0    1.4  1  UQ_con    Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
      0.042   14.2   0.0        1.7    9.0   0.0    3.3  2  SH3_15    Mind bomb SH3 repeat domain
       0.13   12.5   0.2       0.47   10.8   0.2    2.0  1  RWD       RWD domain
       0.17   11.8   0.0       0.44   10.4   0.0    1.6  1  UEV       UEV domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   1.2e-26   5.5e-23       1     119 [.     844     975 ..     844     995 .. 0.81

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 1.2e-26
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESS.....T-SCTTBETTSBB-CGGGSTTT.... CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvt.....kifHPnvdksGevcldiLkeek.... 90 
                 r++ke k l ++ p+++++ + +  +l+ +++li+gpedtpYe + F +++ +p++YP  pP+ +f +       ++Pn++++G++cl++L +++    
  KKY17701.1 844 RIRKEHKILLSSLPPNVYVRTYEG-RLDLLRCLIIGPEDTPYEYAPFVVDIALPSNYPAAPPRAHFHSwtygiGRVNPNLYEEGKICLSLLGTWHgnke 941
                 789999977777777777777775.9*****************************************98999999*****************5555555 PP

                 ..--TTSHHHHHHHHHHHHH..HS-.-TTS-SSH CS
      UQ_con  91 ..WspaltlesvllsiqsLl..aep.npesplnk 119
                   Ws   t+ ++l+si+ L+  ++p  +e +++ 
  KKY17701.1 942 eqWSEKATILQILVSILGLVlvKNPfFNEAGFES 975
                 55**************987744777555555554 PP

>> SH3_15  Mind bomb SH3 repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1       0.2   9.2e+02      12      51 ..     185     236 ..      99     242 .. 0.55
   2 ?    9.0   0.0   0.00037       1.7       2      47 ..     385     520 ..     385     530 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.2
      SH3_15  12 dvekvkklqeghg....gWsgam........tlgsvGtVlkvdadgdlrVkf 51 
                 ++++ +++ eg+     +W g+              G+V+ vd+ ++l + +
  KKY17701.1 185 ELKRADDFEEGDFivyqNWLGEVvetnlevvIRLDDGSVVVVDSSNELEIVV 236
                 5555555555555666666665555555555555567788888887777755 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00037
      SH3_15   2 evGDwVrvkd......................................................................................... 11 
                 +vGD Vr++d                                                                                         
  KKY17701.1 385 QVGDHVRFRDpmsasskykdifgphgcfnrlhrdeisgfdmnefrivamtkhvtvrwqdqtvtqdlstslvpymvpdnelcpgeivalreetqqissan 483
                 589999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

      SH3_15  12 ...dvekvkklqeghggWsgamtlgsvGtVlkvdadgdl 47 
                    +  ++++lq  +gg+ +   l++vG+V ++da  +l
  KKY17701.1 484 hvtKDTTFNELQFLQGGY-DLR-LSKVGVVQSIDASERL 520
                 887777899999999999.556.9**********98874 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2    0.0001      0.47      46      78 ..     797     912 ..     720     954 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0001
                 ......................................................................................TT-CEEEEEEEEE CS
                 x...................................................................................xxxxxxxxxxxxxxx RF
         RWD  46 e...................................................................................feekkkpslkleikl 61 
                 e                                                                                   ++  +  +++++i l
  KKY17701.1 797 EnsthitqifkvsptirhappqfdilegsvpsdhafssdshstaslsrirkehkillsslppnvyvrtyegrldllrcliigpeDTPYEYAPFVVDIAL 895
                 3555556666666666666666666666666666666666666666777777777777777777778888888888888888877778889******** PP

                 -SSTTSS--EEEEEECC CS
                 xxxxxxxxxxxxxxxxx RF
         RWD  62 peeYPeeaPiislsste 78 
                 p++YP  +P  +++s  
  KKY17701.1 896 PSNYPAAPPRAHFHSWT 912
                 *********98887766 PP

>> UEV  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   9.8e-05      0.44      52     103 ..     891     942 ..     864     964 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 9.8e-05
                 EEEE--TTTTTS--EEEE-GCC--TSGGGGGB-TTSBB--HHHHS--TTT-- CS
         UEV  52 iliwvlesyPveaPivyvkptksmvikknenvdaqGlvylpyLeeWkreksn 103
                 + i ++++yP ++P    ++ +    ++n n+ ++G++ l +L  W+ +k +
  KKY17701.1 891 VDIALPSNYPAAPPRAHFHSWTYGIGRVNPNLYEEGKICLSLLGTWHGNKEE 942
                 67899*************999987777778*****************96544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.54
# Mc/sec: 6288.77
//
Query:       KKY17702.1  [L=540]
Description: putative t-complex protein 1 subunit gamma [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     2e-171  571.0   2.3   2.2e-171  570.8   2.3    1.0  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  570.8   2.3  1.2e-175  2.2e-171       1     490 [.      32     525 ..      32     526 .. 0.99

  Alignments for each domain:
  == domain 1  score: 570.8 bits;  conditional E-value: 1.2e-175
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekale 99 
                 +adi++++lGPk m+Kml +++g +v+TnDG++il+e+e+ hPaak+++e++++qdeevGDGTttv+iLage+l +a   +++++hp++ii+++++al+
  KKY17702.1  32 VADIIRSCLGPKAMLKMLLDPMGGIVLTNDGHAILREIEVAHPAAKSMIELSRTQDEEVGDGTTTVIILAGEILAQALPQLERNIHPVVIISAFKRALA 130
                 699************************************************************************************************ PP

                 HHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCS....EECSCCC.EECCCCEECECTTSEEESEEEESS--SST CS
  Cpn60_TCP1 100 kaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAvklieene....keldlgr.ikvvkieggsledselveGlvldkgvlsp 193
                 +al++++ei  +++++++d++e+++++++s+++k +s+ ++ +++l+++Av+++  ++    ke+d++r  +v+ki gg++eds++++G++l+k+++++
  KKY17702.1 131 DALKIIDEI--SLPVNTNDDKEMVDLIESSIGTKTISRYSDLMCSLALKAVRTVSWDAggskKEIDIKRyARVEKIPGGEIEDSKVLDGVMLNKDITHA 227
                 *********..9999999*********************************77777778**********9***************************** PP

                 TSSCEEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S--HHHHHHHHHH CS
  Cpn60_TCP1 194 dmpkklenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrvkkkdlerlaka 292
                  m +++en++v+lld++Le++k e++t+++++++e+++k++  ee+q++++++++ +++ ++v+++kg++dla+h+++k+++ alrrv+k+d +r+a+a
  KKY17702.1 228 AMRRRIENPRVILLDCPLEYKKGESQTNIEITKEEDWNKILHIEEEQVKRMCDAVLALKPDLVITEKGVSDLAQHYFVKQNVTALRRVRKTDNNRIARA 326
                 *************************************************************************************************** PP

                 HT--EBSCGGGGGCGC-EEEEEE.EECCETTCCEEEEECESSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCC CS
  Cpn60_TCP1 293 tGatavssledltpeelGtakkv.eeekigsekttiieevksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkey 390
                 tGat+v++++dl+++++Gt + + e ekig+e++t+++++k++k++tillrg+++++l+e+er+++dA++v++n++ ++++ pGGGate++++ +l++ 
  KKY17702.1 327 TGATIVNRVDDLQESDVGTHCGLfEIEKIGDEYFTFLTKCKDPKACTILLRGPSKDILNEVERNLQDAMSVARNVMFHPRLAPGGGATEMAVSVRLSQL 425
                 ******************999999*************************************************************************** PP

                 CCTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHHHTTXTTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEEEEXX CS
  Cpn60_TCP1 391 aksvsgeeqlaieafakALevipktLaeNaGldpievlaklraahnkgekelgidvesgeiidlveagvvDplkvkrqalksAteaastiLrideiika 489
                 aksv+g  q+ ++a+a+A+evip+tL++NaG +pi vl+klra+h++g  ++gid ++g+i+d+++ +v++p +vk q++k+A e+a+++Lr+d+i+ a
  KKY17702.1 426 AKSVEGVAQWPYKAVAEAMEVIPRTLIQNAGGSPIRVLTKLRAKHAEGSSTWGIDGDKGDIVDMKDYRVWEPEAVKLQSIKTAIESACLLLRVDDICGA 524
                 ************************************************************************************************987 PP

                 X CS
  Cpn60_TCP1 490 k 490
                 k
  KKY17702.1 525 K 525
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.49
# Mc/sec: 3307.30
//
Query:       KKY17703.1  [L=730]
Description: hypothetical protein UCRPC4_g05336 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-45  153.7  14.9    1.5e-24   86.3   1.0    3.2  3  DUF3433       Protein of unknown function (DUF3433)
  ------ inclusion threshold ------
       0.32   10.8   5.6       0.41   10.4   0.2    2.7  2  Cytochrome_B  Cytochrome b/b6/petB


Domain annotation for each model (and alignments):
>> DUF3433  Protein of unknown function (DUF3433)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   1.0   1.6e-28   1.5e-24       1      82 [.     241     323 ..     241     329 .. 0.94
   2 !   76.3   0.9   2.2e-25   1.9e-21       6      89 ..     500     583 ..     497     585 .. 0.97
   3 ?   -2.0   0.6      0.57   5.1e+03       7      30 ..     614     636 ..     608     638 .. 0.45

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 1.6e-28
     DUF3433   1 flvsflpalvavlisllwaaldaavrrlaPFaaLa.hrgataersllldyratlpflallralrnrhwlvalvslvtllsell 82 
                 f++++lp+l++v ++++w+++d++vrrl+PF++L+   g+tae+sl +dy +++ fl++l+a r r+w+v+++s+ tll++ l
  KKY17703.1 241 FCWKYLPTLIFVTYGVFWQIMDFDVRRLEPFYQLSlPDGSTAEQSLHMDYLSMMGFLVPLKAYRYRQWAVLFSSIGTLLAASL 323
                 89*********************************66******************************************7655 PP

  == domain 2  score: 76.3 bits;  conditional E-value: 2.2e-25
     DUF3433   6 lpalvavlisllwaaldaavrrlaPFaaLahrgataersllldyratlpflallralrnrhwlvalvslvtllsellpvlasgl 89 
                 lp l+a++i + w++ld++vr+++PF  L++++a+++++l+ldyr t+    +l+a+ nrh+lvalvs+ ++l+ +l+v++s++
  KKY17703.1 500 LPILIATIIKMTWSTLDFDVRMMEPFFILSRGNAPPQETLTLDYRGTPYGILPLKAFMNRHFLVALVSFGSILTDILTVIVSSF 583
                 8******************************************************************************99975 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.57
     DUF3433   7 palvavlisllwaaldaavrrlaP 30 
                 +++++v   l ++a+    rr +P
  KKY17703.1 614 LSILIVT-ILIFSAILVYWRRGHP 636
                 3333333.3444455555555555 PP

>> Cytochrome_B  Cytochrome b/b6/petB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   1.0     0.027   2.4e+02     117     166 ..     479     528 ..     462     530 .. 0.84
   2 ?   10.4   0.2   4.6e-05      0.41     123     173 ..     606     662 ..     601     673 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.027
  Cytochrome_B 117 vLpwdqmsyWavtvitnllsaiPviGstlvellwgsvsvddatLtrffsl 166
                    +    + +  ++vi n +  +P++  t++++ w++   d   ++ ff l
    KKY17703.1 479 LIIIPIINFTPARVIPNAAPWLPILIATIIKMTWSTLDFDVRMMEPFFIL 528
                   4556678899999**********************999999888888876 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 4.6e-05
  Cytochrome_B 123 msyWavtvitnllsaiPviGstlvellwgsvsvdd......atLtrffslhfllPfl 173
                    s+W++++++ l+ +i ++  +lv++ +g  ++        + L  +f+ h+l+ f+
    KKY17703.1 606 NSFWGSVILSILIVTILIFSAILVYWRRGHPFLPRqpntiaSVLAYIFASHMLFDFI 662
                   59***************************9877531211224566777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.48
# Mc/sec: 4602.54
//
Query:       KKY17704.1  [L=116]
Description: hypothetical protein UCRPC4_g05337 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 769.07
//
Query:       KKY17705.1  [L=371]
Description: hypothetical protein UCRPC4_g05338 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00027   20.1   6.1    0.00027   20.1   6.1    2.2  2  Acyl_transf_3  Acyltransferase family
  ------ inclusion threshold ------
      0.089   12.4   0.0       0.81    9.3   0.0    2.0  2  Wzy_C          O-Antigen ligase


Domain annotation for each model (and alignments):
>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   6.1     3e-08   0.00027     238     313 ..      70     149 ..      37     169 .. 0.71
   2 ?    1.0   0.2      0.02   1.8e+02     259     282 ..     259     282 ..     249     296 .. 0.55

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3e-08
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 238 lalfgqtdggglvasvliqsaslllvslgimllllllfalpsrsafk....llrylgkiSygiYliHlpllmllqkllrd 313
                    +++ +++  +g   ++   +  +++  lg+ ll  + + +p +++++    ++ +lg+ S+giYl+H+pl+  +  +l  
     KKY17705.1  70 WFPVLNWNEYGQPYYTPSIDLGRAYPGLGAQLLCACILFSPGLRRVFetgpWMTWLGSVSMGIYLLHGPLMRSVLAYLVF 149
                    33333332244444555555555666677777777788888888888************************987777665 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.02
                    xxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 259 slllvslgimllllllfalpsrsa 282
                    +l+l++l+i+l +++l++l ++++
     KKY17705.1 259 TLFLILLAIALYVVILLVLVQYWN 282
                    344444444444444444444443 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.039   3.5e+02      26      58 ..     101     140 ..      92     208 .. 0.71
   2 ?    9.3   0.0     9e-05      0.81      39      92 ..     260     334 ..     248     340 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.039
       Wzy_C  26 livlliifykrri......pfllllg.ilvgvilliilfv 58 
                 l+ + i+f   ++      p++ +lg + +g+ ll  +++
  KKY17705.1 101 LLCACILFSPGLRrvfetgPWMTWLGsVSMGIYLLHGPLM 140
                 4444444444444578899999999988888888766666 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 9e-05
       Wzy_C  39 pfllllg.ilvgvilliilfvlstnletlknitkafgkldkk.......................kgkdksgssRlyi 92 
                 +fl+ll+ +l +vill+++ +++++ e l ++  a   ++ k                       k kd+  + R++i
  KKY17705.1 260 LFLILLAiALYVVILLVLVQYWNKRVEPLFAKATA---WTEKaclpkqpqndgakglglrldgvgKRKDDDDGTRGEI 334
                 45666665999999***************986544...4444588999999999999999999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2601.86
//
Query:       KKY17706.1  [L=451]
Description: putative ribosome biogenesis protein ssf2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-50  171.1   0.1    3.8e-50  170.7   0.1    1.2  1  Brix             Brix domain
     0.0034   17.7  14.0     0.0034   17.7  14.0    2.5  3  DBINO            DNA-binding domain
  ------ inclusion threshold ------
        7.7    5.9   9.0         15    4.9   9.0    1.4  1  PBP_sp32         Proacrosin binding protein sp32


Domain annotation for each model (and alignments):
>> Brix  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.7   0.1   6.4e-54   3.8e-50       4     193 .]      42     341 ..      39     341 .. 0.95

  Alignments for each domain:
  == domain 1  score: 170.7 bits;  conditional E-value: 6.4e-54
                 --HHHHHHHHHHHHHCTTSEEEEEE.ECT-TTTHHHHHHH...-HHHHHHHH..HCTCSEEEEEE..SSTTEEEEEEEEECECTGGGSTTTS......T CS
        Brix   4 tssrlrqllkdlrslmkphtasflk.rnsnklkdlvelag...vthlellse..kndcslfvfelskkrPngptlefkvenyslmkdlkkak......k 90 
                 ++s ++ql+kd+rs+m+p+tas+lk r+snklkd++ +ag   vthl+l+s+  +++++++++ +    P+gptl f+ve+ysl+kd+ k++      +
  KKY17706.1  42 GPS-VSQLVKDVRSMMEPDTASRLKeRKSNKLKDYLVMAGplgVTHLILFSRseSGNVNMRIALA----PRGPTLNFRVEKYSLIKDIAKSQkhprggG 135
                 556.9********************9999***********************999999*******....********************999******* PP

                 S-TT---EEEEES.HHH..................HHHHHHHHHHH..SEEEG..-B-GG-SEEEEEEES.CCTTT.ECEEEEEEEEEE.......... CS
        Brix  91 tefgsrPllvfngkenf..................kllksllqdlFrvpkislkspklsglrrvvlftaaenqetd.ktisfRhYaikl.......... 160
                 +e+ + Pllv+n   nf                  +l+++++q++F  p+is+++++ls +rr++l++ +e ++++  ++++RhYai +          
  KKY17706.1 136 KEYHHAPLLVMN---NFttpepadgksdpirkqleSLTTTIFQSMF--PPISPQNTPLSTIRRIMLVN-REPSRDGsWVLNVRHYAIITkrtgasrrvr 228
                 ************...999999999999******9************..********************.7767766678********98999******* PP

                 ..........E..STTTTECT........................................................................T..EEE CS
        Brix 161 ..........kksgkklpnleke......................................................................kkerve 179
                           +k+gk++pnl+k+                                                                      +k++v+
  KKY17706.1 229 rldpkeqrqrEKKGKAIPNLGKLddaadylldpsaagytsaseteldtdnevevletatrrvlskkemqrqkekatgdgaerpvithtttshtEKRAVK 327
                 ****9999999999999999999****************************************************************99887549**** PP

                 EEEESEEEEEEEEE CS
        Brix 180 LeEiGPrfdLklrk 193
                 L+E+GPr++L+++k
  KKY17706.1 328 LVELGPRLRLRMYK 341
                 ***********986 PP

>> DBINO  DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.5       1.6   9.3e+03      86      98 ..     228     240 ..     214     244 .. 0.47
   2 ?   -1.4   0.8      0.46   2.7e+03      97     112 ..     287     302 ..     270     310 .. 0.64
   3 !   17.7  14.0   5.7e-07    0.0034      57     107 ..     353     402 ..     314     405 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.6
       DBINO  86 rkkaekealekak 98 
                 r+   ke+ +++k
  KKY17706.1 228 RRLDPKEQRQREK 240
                 3333333333222 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.46
       DBINO  97 akkeeeereakRqqrk 112
                  ++   ++e +Rq+ k
  KKY17706.1 287 TRRVLSKKEMQRQKEK 302
                 3444556666666655 PP

  == domain 3  score: 17.7 bits;  conditional E-value: 5.7e-07
       DBINO  57 tkdlqlrakrlvremllfwkknekeereerkkaekealekakkeeeereak 107
                  +d+++++k+  +e+ + w k  k e+eer+ka+ke++e++kke+ee+ +k
  KKY17706.1 353 WHDFVTKSKKEKKELDAVWEKRRK-EKEERRKAQKENVERKKKEKEEQRKK 402
                 5799***************99865.6788999***********99987655 PP

>> PBP_sp32  Proacrosin binding protein sp32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   9.0    0.0025        15     133     240 ..     294     405 ..     281     410 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0025
    PBP_sp32 133 dtlkevevsaevsslsaetPivteatstekeafqpwperllnnvee.......llksslslg.gkekape...akpkeeqllekkqeqleehkteekkk 220
                 + ++++  +a  +   ae P++t++t++  e       r  + ve        ++k ++ +  g+    +   + +ke++ l+   e+ ++ k e++k 
  KKY17706.1 294 KEMQRQKEKA--TGDGAERPVITHTTTSHTE------KRAVKLVELgprlrlrMYKVEEGVCdGRIMWHDfvtKSKKEKKELDAVWEKRRKEKEERRKA 384
                 3444433333..3456899*****9988777......55555555555566669999998852443333233245667777888888888889999999 PP

    PBP_sp32 221 qeeqeeee.keeeakqeegeG 240
                 q+e  e + ke+e ++ +++G
  KKY17706.1 385 QKENVERKkKEKEEQRKKSKG 405
                 998888773334444445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2166  (0.12081); expected 358.6 (0.02)
Passed bias filter:                      709  (0.0395449); expected 358.6 (0.02)
Passed Vit filter:                       160  (0.00892409); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.83u 0.36s 00:00:01.19 Elapsed: 00:00:00.54
# Mc/sec: 2492.59
//
Query:       KKY17707.1  [L=474]
Description: putative atp-dependent rrna helicase rrp3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-48  164.8   0.0    2.5e-48  164.1   0.0    1.3  1  DEAD           DEAD/DEAH box helicase
    8.2e-31  106.6   0.5    3.2e-30  104.7   0.0    2.2  3  Helicase_C     Helicase conserved C-terminal domain
    4.9e-07   29.9   0.0      9e-07   29.1   0.0    1.4  1  ResIII         Type III restriction enzyme, res subunit
    0.00052   19.3   0.0     0.0013   18.0   0.0    1.6  2  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.1   0.0   5.6e-52   2.5e-48       1     175 [.      74     240 ..      74     241 .. 0.96

  Alignments for each domain:
  == domain 1  score: 164.1 bits;  conditional E-value: 5.6e-52
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvd 99 
                 t+iQae+ipl+l+g+d+++ aeTGsGKT+af++p+lq++++  + ++   l+++PtreLa q+ + ++ +++ i++r+ +++gg +   q   l ++++
  KKY17707.1  74 TPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQTLMD--KPQAFYGLVLAPTRELAYQISQAFEALGSLISVRCTVLVGGMDMIPQSISLGKKPH 170
                 89*************************************97..9999***********************************************999** PP

                 EEEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 100 ivvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 ivv+tpgrl+d+l +t+ ++l+++++lV+DEadrlld++f++ +++il+ l       +++r+++++SAT++++v+ 
  KKY17707.1 171 IVVATPGRLLDHLeNTKGFSLRSLKYLVMDEADRLLDMDFGPILDKILKIL-------PKERRTMLFSATMSNKVES 240
                 *************77888*********************************.......67889*********98876 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.8   7.9e+03       6      29 ..     217     238 ..     213     254 .. 0.62
   2 !  104.7   0.0   7.2e-34   3.2e-30       2     111 .]     277     385 ..     276     385 .. 0.95
   3 ?   -1.7   0.0      0.83   3.7e+03      18      60 ..     389     440 ..     386     447 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.8
                 HHHHHHHTTTTSEEEEEESSHH.HH CS
  Helicase_C   6 llellkleeeggkilifvntid.rl 29 
                 +l++l    +++++++f+ t + ++
  KKY17707.1 217 ILKIL---PKERRTMLFSATMSnKV 238
                 44444...67778888887777544 PP

  == domain 2  score: 104.7 bits;  conditional E-value: 7.2e-34
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsy 100
                 k ++l++ l + + g++++if++t+++ +++ +ll+  g+++++lhg+l+qn r+ +l++f+++++ +L+atdva+rG+dip+v+lV+n+dlp + ++y
  KKY17707.1 277 KDLYLINTL-NDHAGQTTIIFTRTVNETQRIAILLRLLGFSAIPLHGQLSQNARLGALNKFRSKSRSILVATDVAARGLDIPSVDLVVNLDLPPDSKTY 374
                 678899999.899*************998889998888*************************9999******************************** PP

                 HHHHTTSSSTT CS
  Helicase_C 101 iqriGRtgRag 111
                 i+r+GRt+Rag
  KKY17707.1 375 IHRVGRTARAG 385
                 *********97 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.83
                 EEEEEESSHH.....HHHH..HHHHHHHT..TSTEEEESTTSTHHHHHHHHH CS
  Helicase_C  18 kilifvntid.....rlek..vklllekk..gikvavlhgelpqnereeile 60 
                 +++ fv++ d     r+e    k l+e +  + +v v+  ++   +r++++e
  KKY17707.1 389 NAISFVTQYDvelwlRIETalGKKLKEYEtvKEEVMVMAERIGEAQRQAVME 440
                 6667777777666555544444555555566777888888888888888776 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0     2e-10     9e-07      31     169 ..      94     234 ..      72     236 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 2e-10
                 ESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.........-SEEEEEHHHHHHTH........ CS
      ResIII  31 maTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka..kekdstnkkilvttiqsldadseeeeeese 126
                 ++TG+GKT    + + + l+ k +    l+l+p+++l  q  ++f+ + s      ++++ g  +++  + +  ++ +i+v+t  +l  ++    e+++
  KKY17707.1  94 AETGSGKTAAFaLPILQTLMDKPQAFYGLVLAPTRELAYQISQAFEALGSLISV-RCTVLVGGMDMIpqSISLGKKPHIVVATPGRLLDHL----ENTK 187
                 57*******9967788888999998899*******************9998754.77777776666655555567889*************....7888 PP

                 HHHTTT-SEEEEETGGGTTS.T...TTHHHHHT-.--SEEEEEESS- CS
      ResIII 127 ellrdrfdviiiDEaHrlgakk...swreilekf.keavllglTATp 169
                  ++  + +++++DEa rl +++      +il+ + ke   + ++AT+
  KKY17707.1 188 GFSLRSLKYLVMDEADRLLDMDfgpILDKILKILpKERRTMLFSATM 234
                 88888899************844445566666655567888899997 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.89     4e+03     163     178 ..     118     133 ..     112     136 .. 0.84
   2 !   18.0   0.0   2.8e-07    0.0013      39     156 ..     269     389 ..     256     398 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.89
  ERCC3_RAD25_C 163 ffYsLvskDtkemays 178
                     fY Lv   t+e+ay 
     KKY17707.1 118 AFYGLVLAPTRELAYQ 133
                    49**********9996 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 2.8e-07
  ERCC3_RAD25_C  39 yvmnpnkfracefLiky.hekrgDkiivfsDnvfaLkeyakklk.....kpyiyGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvl 128
                    y+  p+k + + +Li++  ++ g   i+f+  v   +++a  l+        ++G+ s++ rl  l+kf+++++ + ++   v+   +D+P+   +
     KKY17707.1 269 YIFCPHKHKDL-YLINTlNDHAGQTTIIFTRTVNETQRIAILLRllgfsAIPLHGQLSQNARLGALNKFRSKSR-SILVATDVAARGLDIPSVDLV 362
                    56678887776.67765155779999**************98862222145689****************8754.6677789************** PP

  ERCC3_RAD25_C 129 iqisshfgsrrqeaqrlGriLrakkksn 156
                    + ++    s+     r+Gr  ra k+ n
     KKY17707.1 363 VNLDLPPDSKT-YIHRVGRTARAGKSGN 389
                    ***99999875.6899999999977654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3258.98
//
Query:       KKY17708.1  [L=905]
Description: putative glycoside hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-80  272.0   6.0    1.8e-80  271.3   6.0    1.3  1  Glyco_hydro_31  Glycosyl hydrolases family 31
     0.0013   19.0   0.0     0.0029   17.9   0.0    1.5  1  DUF4968         Domain of unknown function (DUF4968)


Domain annotation for each model (and alignments):
>> Glyco_hydro_31  Glycosyl hydrolases family 31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.3   6.0     2e-84   1.8e-80       3     440 .]     179     625 ..     176     625 .. 0.81

  Alignments for each domain:
  == domain 1  score: 271.3 bits;  conditional E-value: 2e-84
                     EE-SSHHHHHHHHHHHH-------GGGGSEEEE-TT.--SHHHHHHHHHHHHHTT--EEEEEESCGGSBTTC................CTB-.TT CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxx RF
  Glyco_hydro_31   3 flGptpkevvkqyteltGrpalpPrwalGfhqsryg.ykdeeeveevvdkfreagiPldvivlDidymdkrk................dftwdke 80 
                      +G +++ ++k y++++G ++ +Prw+lG + sr++ y +++ +++++d+f e++iP++v v+D+d+    +                ++tw+k+
      KKY17708.1 179 AYGVDYRAAIKAYYAVSGPQPSLPRWSLGNWWSRFYaY-TADSYMALMDNFAEEKIPMSVGVIDMDW----HlvkepevlesgstgwtGYTWNKK 268
                     34877*****************************9966.****************************....22224445555555555******* PP

                     TSS-HHHHHHHHHHT.T-EEEEEE-S..EE.E.-TTSHHHHHHHHTTSBECCCCCSTCECTSSEEEEB-TTSHHHHHHHHHHHHHHHCTCT--EE CS
                     xxxxxxxxxxxxxxx.xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31  81 rFpdpkemvdelhek.gvklvvivdp..aiskqeeeyeafdegkekgvflknkdgsykgkwpgstafpDftnpearewwkkelkkflldlgvdgl 172
                      Fpdp++++++lhek ++k++++ +p  +i++ e++y+ + ++  ++              +g    ++ t+p+  + + + l++ l + gvd++
      KKY17708.1 269 LFPDPPKFLKTLHEKyKLKVTLNDHPadGIYSYEDSYKDMAKALGHDT------------THGLPIQFEPTSPKFMKQYFQLLHRRLEEQGVDFW 351
                     ************998788888877787789877755554444333333............234455556666666554444667777778***** PP

                     EE-STTTB.SCCCCHHHHCCCTSCETTCC..HHHHCCCHHHHHHHHHH.HHHHHHTTTST-EEEESSEETTGGGCTEEE--S-BSSHHHHHHHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 173 wiDmnepsnfeegsdseekeaketkaags..hydvhnlygllmakaty.eglkekkpkkrpfiltRstfaGsqryaahWsGdnassWeslresip 264
                     wiD +       +s  +                 + n + +  +k       ++    +rp+i++R++++Gs+ry+  +sGd   +Wesl ++++
      KKY17708.1 352 WIDWQQG----PYSRVP-----------GvdPLWLLNHFHFIDNKLFPpPTCPSA--ASRPVIFSRYGGPGSHRYPLGFSGDSIVTWESLDFQPY 429
                     ***5441....122111...........112356778888777776556455555..69***********************999********** PP

                     HHHHHHTTT--SEEEECT-SG..HCHHHHHHHHHHHHTTSSSEEE--ST.TSS--SHHHHCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH-.. CS
                     xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
  Glyco_hydro_31 265 allsfslsGvpfwgaDigGFe..ntteelyaRWvqlGafsPffrnHssk.dakrqepwafgeeveeaarkaielRyrLlPylYtlfyeahetg.. 354
                      +l++s  G+ +w++DigG+     + el++RW+qlG++sP++r+Hss+  ++ +epw+++  ++ea+  ++++R+rLlPyl ++++   ++g  
      KKY17708.1 430 FTLTASNIGYGWWSHDIGGHMlgYRDDELVTRWIQLGCMSPILRLHSSDsPWMGKEPWNYDPIAREAMGLWLRFRHRLLPYLASISFAMEQEGge 524
                     55555555************6544588*********************99**********************************98888888744 PP

                     .--SEE-HHHH-TT-CCCCC--S-EEETTT.EEE----STT.....-SEEEEEE-SS........EEEETTT--EEESSEEEEEE--TTSS-EEE CS
                     .xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.....xxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 355 .lpvvrplflefpedektfdiddqfmfGds.LLvaPvleee.....atsvevyLPgg........kWydfwtgekyeggqtveltapldeiplfv 434
                       p+v+p+++++p+  ++++ ++qf+fG+s L+vaP++++e       +v++++P          kW+d++t + y  +++++l+ +l ++p+++
      KKY17708.1 525 sWPLVQPMYWDYPTIDAAYECKNQFFFGSSnLIVAPITSPEspntkLAKVKAWIPPPinedeasaKWVDIFTSTIYISKKEIDLHRSLYQYPVLA 619
                     469**********9889999********988*******9988889855999***9544789*****************999888877767***** PP

                     ETTEEE CS
                     xxxxxx RF
  Glyco_hydro_31 435 raGaIi 440
                     ++G+Ii
      KKY17708.1 620 KEGTII 625
                     *****8 PP

>> DUF4968  Domain of unknown function (DUF4968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.2e-07    0.0029      15      72 ..      23      80 ..      18      89 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.2e-07
     DUF4968 15 lritvltddiiRvryapdgefeedesyavvkkadektefeveekedevvikTekltvk 72
                +r t+l d ++R   a dg+fe+++s   v+++ +  +f+v+e+++ ++i T++l+++
  KKY17708.1 23 YRFTLLFDGLVRYEWASDGHFEDRPSLFAVNRKFPVPDFKVHETDEVLEIDTQRLHLV 80
                56788889999999999*********99999999*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (905 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.50
# Mc/sec: 5480.84
//
Query:       KKY17709.1  [L=468]
Description: hypothetical protein UCRPC4_g05342 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-17   62.3   0.1    4.4e-17   62.3   0.1    1.8  2  EAF       RNA polymerase II transcription elongation factor


Domain annotation for each model (and alignments):
>> EAF  RNA polymerase II transcription elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.1   2.5e-21   4.4e-17       1      98 [.      33     147 ..      33     149 .. 0.89
   2 ?   -2.4   0.2      0.36   6.5e+03      28      54 ..     248     274 ..     223     301 .. 0.57

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 2.5e-21
         EAF   1 Ypiklgssllnal....kssksefvairYnfkPasvdqskegtlkqsssenkevsvelsfsd..t........FeGseqpa......kekdcvLvfdee 79 
                 Yp++lg++l+++l    +ss++++++irYn+kP+ +++ +++ l + + ++k  +++ls++d  +        + G+ +p+      +e+++ Lvfd++
  KKY17709.1  33 YPVVLGDELARKLslnaESSSTRYYGIRYNYKPKHSSTRQKTVLRR-GRSRK--TFDLSIEDgaDghdplsfkYYGTLDPKsaasadQESTFALVFDQD 128
                 9*********9989*9999**************************9.55454..8999995555145678888****99999*****99********** PP

         EAF  80 tkeftLerldstvrlnltr 98 
                 +++ftLe++++ +++nlt+
  KKY17709.1 129 RQQFTLEPISAELNFNLTS 147
                 ****************997 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.36
         EAF  28 kPasvdqskegtlkqsssenkevsvel 54 
                 kP+   ++++++ + s+ ++k v+ + 
  KKY17709.1 248 KPKAKPSTSTAKSSASRASTKAVTAKS 274
                 444333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1056  (0.058899); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 2965.75
//
Query:       KKY17710.1  [L=479]
Description: putative dor1-like family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-56  189.2   0.6    3.3e-41  141.1   2.2    2.1  2  Dor1        Dor1-like family
  ------ inclusion threshold ------
      0.011   15.7   0.2      0.029   14.5   0.2    1.7  1  Vps51       Vps51/Vps67
      0.073   12.9   0.1       0.21   11.4   0.1    1.8  1  Folliculin  Vesicle coat protein involved in Golgi to plasma 


Domain annotation for each model (and alignments):
>> Dor1  Dor1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.1   2.2   5.5e-45   3.3e-41       2     190 ..      36     246 ..      35     301 .. 0.93
   2 !   44.6   0.0   1.3e-15   7.6e-12     217     318 ..     331     432 ..     326     448 .. 0.89

  Alignments for each domain:
  == domain 1  score: 141.1 bits;  conditional E-value: 5.5e-45
        Dor1   2 selsskpleelek.epelLaeeaeeilaqiqdLarknyktlidaaealeairqelediraqledLvlklpkLteectrfskkaeeisek.....rkenk 94 
                 + l++  +++l++ ep++La+ a+ +  ++q+La  + + +i+aa+  +++ ++l+ + ++ e+L++ +pkL+ee++rfs+ +++  ++     rk++ 
  KKY17710.1  36 TRLTTLSIDALHTtEPQSLAQSAHSVNLSLQALANRSNRSIITAADSFSTLKTSLPIVIQESEQLRDAVPKLDEEAVRFSTTYSKAGQNaildrRKQAL 134
                 6799999*****************************************************************************9998889998***** PP

        Dor1  95 llldkheqllellelPqlmd............rcirng.yydealeLeayvsrLkqristnpviqsiaaeveetvqelleqLiqkLrsp..lqLaeclr 178
                 ll++++ +l+++lelP l++               + g  y++al+L a+++rL+++++t+ +++ + +e+ee++ e++++Li++Lrs   + La+ +r
  KKY17710.1 135 LLSRNVDRLSDILELPTLLStaissvsaagpgSGTNSGvSYSSALDLFAHIKRLQTLYPTSTIVKGVLDEAEEAMNEMTSNLIASLRSQqnIRLAAAIR 233
                 ********************9999999988884444446***********************************************98555******** PP

        Dor1 179 vigYlrrv.avlt 190
                 +ig+lrrv ++l+
  KKY17710.1 234 TIGWLRRVaPDLS 246
                 ********77776 PP

  == domain 2  score: 44.6 bits;  conditional E-value: 1.3e-15
        Dor1 217 nasellkrlieivrvnlfdvllqYraifpdegstlrdlaseekaagdaifswvlskissflqtlermlkrg.ievslekvldqlmyfaksfgrvgaDfr 314
                 + + +lkr+iei r ++f+++  Y++ifpdeg++  d  + +   + a+  ++l+ +    +tl+++ + +  ++ +e++l+q+ y a s+gr gaDf 
  KKY17710.1 331 QSERYLKRYIEIFREQSFSTISMYKNIFPDEGEGGSDTSGGLLPLPAALHTFPLHLVELLTETLKTYMPNIkDGSARESLLTQVLYTAGSLGRLGADF- 428
                 5689******************************88888877777788888*****************99989999**********************. PP

        Dor1 315 allp 318
                 +l+ 
  KKY17710.1 429 GLII 432
                 5544 PP

>> Vps51  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.2   4.8e-06     0.029       6      86 ..      29     109 ..      24     110 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.8e-06
       Vps51   6 fdaeayvrellakstlkellkve.asllseiraldselkalVydnYskLisasdtIrkmksemdkldqklselkqaiskiae 86 
                   a++y++ +l++ +++ l+ +e +sl ++++  + +l+al  ++ +  i+a+d  +++k+++  + q+ ++l++a+ k++e
  KKY17710.1  29 PAASKYLT-RLTTLSIDALHTTEpQSLAQSAHSVNLSLQALANRSNRSIITAADSFSTLKTSLPIVIQESEQLRDAVPKLDE 109
                 56889999.8999*******99867899***********************************9999999999999998876 PP

>> Folliculin  Vesicle coat protein involved in Golgi to plasma membrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   3.6e-05      0.21      96     171 ..     286     358 ..     266     360 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.6e-05
  Folliculin  96 aaeiqalaeaelereskeeeassaassssalkadgsglsrregssfslskekylrrsksklkarsLaelvgdediF 171
                  a +++la++e er+++ +    ++ s ++ k+++sglsr+ ++  ++++e+yl+r  + ++++s   +   ++iF
  KKY17710.1 286 LAPLRDLADQETERRKQTQ---VESMSGQEGKTSKSGLSRTRSDFYGQQSERYLKRYIEIFREQSFSTISMYKNIF 358
                 4468889999999988844...4455566788999999999999999**************************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 3090.45
//
Query:       KKY17711.1  [L=491]
Description: putative phosphoglycerate mutase family domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-28  100.1   0.0    2.2e-28   99.3   0.0    1.4  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)
     0.0015   17.9   0.0      0.003   17.0   0.0    1.4  1  His_Phos_2  Histidine phosphatase superfamily (branch 2)
  ------ inclusion threshold ------
        0.1   12.4   0.3       0.36   10.7   0.3    1.9  1  MGTL        MgtA leader peptide


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.0   3.7e-32   2.2e-28       1     187 [.       7     214 ..       7     220 .. 0.88

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 3.7e-32
                 EEEEE---BTTB--.....T..T----B-HHHHHHHHHHHHHHTT..S---EE..EE-SSHHHHHHHHHHHHCTT.............--EEE-GGGS- CS
  His_Phos_1   1 lyLvRHGetewnaegr.lqg..rtdvpLteeGreqAealaerlag..epidai..ysSplkRarqTaeliaealg.............lpveldegLrE 79 
                 ++L+RH+++e n+++   q    + v+Lt+eG++qA +++++l++  +p d++  ++Sp++R+r+T e i++ l              ++v ++++LrE
  KKY17711.1   7 IILIRHAQSEGNKNRDiHQSipDHRVKLTPEGHKQALEAGRKLRQllRPDDTLhfFTSPYRRTRETTEGILKSLTsddpspspfprrtIKVYEEPRLRE 105
                 79*********9998765552245577******************9555555599*******************999********************** PP

                 ---GGGTT-B.HHHHHH..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSE....EEEEE-HHHHHHHHHHHHT--GGGGGGB--.-T CS
  His_Phos_1  80 idfGdweglttaeiaeeypeeleawlrdpadvrppggEsledvaaRvaaaleelaarheget....vlvVsHggvirallarllglpleelrrlel.dn 173
                  dfG+++   +ae+++    + e+ + +   +r+p+gEs +d ++Rv+++ + l +r ++++     ++V+Hg + r++l++++++++e +++l+  ++
  KKY17711.1 106 QDFGNFQPC-SAEMERM---WQERADYGHFFYRIPNGESAADAYDRVSNFNDSLWRRFGEDDfasvCVLVTHGLMTRVFLMKWFHFSVEYFEDLRNiNH 200
                 *******88.7777777...6666666777789********************************99*************************9988799 PP

                 T-EEEEEE-SS-EE CS
  His_Phos_1 174 aslsvlefdeggwr 187
                 ++ +v++ + ++ +
  KKY17711.1 201 CEFVVMKRNMDNGK 214
                 99999887776655 PP

>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.9e-07     0.003      74     131 ..      33      82 ..      19     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.9e-07
                 .B-HHHHHHHHHHHHHHHHHCHTCCHTTSS--TTEEEEEESSHHHHHHHHHHHHHHCH CS
  His_Phos_2  74 elthaGrkqaeelGrqfrqrYplgLlrlhltykdlkirassegRviaSAaafakGllg 131
                 +lt++G+kqa e Gr++rq  +    ++    ++l +++s ++R++++ +  +k l +
  KKY17711.1  33 KLTPEGHKQALEAGRKLRQLLR----PD----DTLHFFTSPYRRTRETTEGILKSLTS 82 
                 69****************8776....55....89**************9988888775 PP

>> MGTL  MgtA leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3   6.1e-05      0.36       2      15 ..      84      97 ..      83      98 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.1e-05
        MGTL  2 dPdPTPLPRrRlkL 15
                dP P P PRr +k 
  KKY17711.1 84 DPSPSPFPRRTIKV 97
                9*********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3205.29
//
Query:       KKY17712.1  [L=207]
Description: hypothetical protein UCRPC4_g05345 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-36  123.9  17.0    5.5e-36  123.4  17.0    1.2  1  DUF1168          Protein of unknown function (DUF1168)
  ------ inclusion threshold ------
       0.55    9.4  11.2       0.67    9.1  11.2    1.1  1  DUF1682          Protein of unknown function (DUF1682)
        1.1    9.3   6.5        1.8    8.6   6.5    1.4  1  Peptidase_S49_N  Peptidase family S49 N-terminal
        2.2    8.6  15.0        3.4    8.0  15.0    1.2  1  Vfa1             AAA-ATPase Vps4-associated protein 1
        6.6    5.5  12.5         60    2.4  13.3    1.8  2  NARP1            NMDA receptor-regulated protein 1


Domain annotation for each model (and alignments):
>> DUF1168  Protein of unknown function (DUF1168)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.4  17.0   1.5e-39   5.5e-36       5     133 ..      55     187 ..      45     190 .. 0.77

  Alignments for each domain:
  == domain 1  score: 123.4 bits;  conditional E-value: 1.5e-39
     DUF1168   5 vkipekkkekksrappefvrnVmGSSAGAGSgeFhvYrhlRrrEyeRlklieekskkeeedeefqqkleenkeeaeektaKkrakRekkkqkakkkkka 103
                 ++i +++   + +++pe+v+nV+GSSAGAGSgeFhvY+++RrrEy+R+k +ee+++ke++d+e+++k+e +++e eek aK+rakR+kkk k kk  ++
  KKY17712.1  55 AEIAARQAAIAASSVPEIVTNVQGSSAGAGSGEFHVYKASRRREYDRVKKMEEEVEKEKADAEWEKKQEARRREVEEKRAKNRAKRDKKKGKGKKGPQQ 153
                 45666666666799****************************************************************************555554444 PP

     DUF1168 104 kkkkkkekekeeks.....edseekseeeeeeeee 133
                 +++++ +++  +       +++++k +ee++e++e
  KKY17712.1 154 QQQANGATNGPK-IitgliSREDSKGDEESDEQSE 187
                 444433333332.2567765555555555555443 PP

>> DUF1682  Protein of unknown function (DUF1682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  11.2   0.00019      0.67     263     317 ..      92     145 ..      50     153 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00019
     DUF1682 263 kktReevekklkkeaeeekaEeaqekkeeekkkereeklaklspeeqrKyeeker 317
                 k+ R ++ +++kk +ee ++E+a  +  e+k+++r++++++  ++++ K ++k+ 
  KKY17712.1  92 KASRRREYDRVKKMEEEVEKEKAD-AEWEKKQEARRREVEEKRAKNRAKRDKKKG 145
                 667778888888888877776666.445555555566666666666666666654 PP

>> Peptidase_S49_N  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   6.5    0.0005       1.8      36      95 ..      83     144 ..      57     165 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0005
  Peptidase_S49_N  36 kekgelevtkLneeyk.elkeeleealldeeelkaaekkekkeeke.ekkaekkkakeeeek 95 
                      + +ge++v k +++ + ++ +++ee++ +e++  ++ekk++ +++e e+k++k++ak++++k
       KKY17712.1  83 AGSGEFHVYKASRRREyDRVKKMEEEVEKEKADAEWEKKQEARRREvEEKRAKNRAKRDKKK 144
                      55666666555543221233445555555555555555443333331333334444443222 PP

>> Vfa1  AAA-ATPase Vps4-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  15.0   0.00093       3.4      61     118 ..     100     173 ..      87     196 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00093
        Vfa1  61 aakkkkeleeeiekvkkeyeekqkkkkekekkkkekdkkdkdkkkekekdkkkekek................e 118
                 ++ kk e e e ek  +e+e+kq++++++ ++k+ k++ + dkkk k k+  +++++                +
  KKY17712.1 100 DRVKKMEEEVEKEKADAEWEKKQEARRREVEEKRAKNRAKRDKKKGKGKKGPQQQQQangatngpkiitglisR 173
                 22334444455566777888888888877777766665555555555555544444445667777776554431 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0     0.087   3.1e+02     140     168 ..      32      60 ..      18      73 .. 0.80
   2 ?    2.4  13.3     0.017        60     401     459 ..     104     161 ..      89     171 .. 0.51

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.087
                 THHHHHGGGGGGSCHHHHHHHHHHHHHTT CS
       NARP1 140 slfanlksLYedkeKvkileelvegyvks 168
                 +l a++ sL++d+eK  il  +  +++++
  KKY17712.1  32 PLAADVTSLFADSEKEVILPPTSAEIAAR 60 
                 6889***********99998777766655 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.017
                 HHT-S-HHHHHHHHH.HHHHHHHHHHHHHHHHHHHH--.......-------------S- CS
       NARP1 401 ksaelseaerkklrk.kakkaekkaekeeaekaekekekkaaekkakkedeeakkededp 459
                 k++e  e e++k+     kk+e+++++ e+++a++++++++++ k kk  +++++++   
  KKY17712.1 104 KMEE--EVEKEKADAeWEKKQEARRREVEEKRAKNRAKRDKKKGKGKKGPQQQQQANGAT 161
                 2222..333344433134444555555555555555555566666666666666555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2423  (0.135144); expected 358.6 (0.02)
Passed bias filter:                      832  (0.0464053); expected 358.6 (0.02)
Passed Vit filter:                       135  (0.0075297); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 1255.61
//
Query:       KKY17713.1  [L=373]
Description: putative cystathionine gamma-synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-22   80.3   0.0    1.3e-22   79.9   0.0    1.0  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
     0.0049   16.1   0.0     0.0064   15.7   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
      0.084   13.1   0.7         18    5.6   1.0    2.4  2  H_lectin         H-type lectin domain


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   2.1e-26   1.3e-22     135     381 ..      65     321 ..      41     322 .. 0.86

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 2.1e-26
                      CTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS-GGGGT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHH.HHH CS
  Cys_Met_Meta_PP 135 kentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfaspllqrplklgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelk.flq 227
                        ++ +v++E p+npll   D++++ +la ++g l++vD t+ s +++  l   aDivv S TK  +G  dv++G +v + + +   +l+  +q
       KKY17713.1  65 GRRVPAVWTEFPSNPLLVSSDLHRLRALANEHGFLLIVDDTVGSFCNIDVLPV-ADIVVTSLTKSFSGYADVLGGSAVLNPNSRHYPTLQgLFQ 157
                      34889******************************************999987.9********************9998877666666652699 PP

                      HHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTS......TTEEEEE-TTST.TSTTHHHHHHHSS......SG-SEEEEEESSH CS
  Cys_Met_Meta_PP 228 nalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekh......pkvekvyYpglp.shpqhelakkqlk......gaggvlsFelkse 308
                      ++  + l p da +ll        R    ++nA+ + + L+++        ++++yYp+lp +++++ ++ + ++      g+g ++s e +s 
       KKY17713.1 158 RHYHNDLHPLDATVLLNNSDDYLKRSAILNRNAQSLISLLHTNfttsstTPIKSLYYPSLPpTSQNYTTFLRPATpdfpspGYGCLFSIEFTSL 251
                      *********************999*****************9977766658*********73678899998876533333355669****9999 PP

                      HHHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHHHHHH CS
  Cys_Met_Meta_PP 309 eekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRlsvGiEdvdDliaDlkqal 381
                        +  +f+dnl++      lG+  +l+ +p+++ + + + +e e++gv+++++R+s G+Ed  +l   +  al
       KKY17713.1 252 -PALIAFLDNLHVH-QGPHLGAHRTLA-MPYVKAIFNDKMDEYEKYGVNERMLRISAGLEDDAELHRAFTFAL 321
                      .579*******986.5789****9985.89999999999999*******************999998887776 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.1e-06    0.0064     132     227 ..      51     133 ..      26     204 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.1e-06
                    HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGG CS
  Aminotran_1_2 132 lealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaG 227
                    +++l++ l +  ++  ++  +++e p+NP  +  +l  l++l   a+++++ll+vD++ + f+  +      ++ v++    ++v+sl K+f+ + 
     KKY17713.1  51 IDELDTHLISERSQGRRVPAVWTEFPSNPLLVSSDLHRLRAL---ANEHGFLLIVDDTVGSFCNID------VLPVAD----IVVTSLTKSFSGYA 133
                    6777777777677777899***********999999999999...************988888862......444444....99999999997665 PP

>> H_lectin  H-type lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   1.0     0.003        18       2      17 ..      20      35 ..      19      38 .. 0.90
   2 ?    4.6   0.0    0.0063        37       6      31 ..     244     269 ..     242     275 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.003
                EEEE-SS--SS--EEE CS
    H_lectin  2 vtvtFskpFssiPkVf 17
                ++v F  pF+s+P+Vf
  KKY17713.1 20 KPVLFGFPFQSTPDVF 35
                7899***********8 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0063
                 -SS--SS--EEEEEEEEEEEBTT.EE CS
    H_lectin   6 FskpFssiPkVflslnkidmdkgqnl 31 
                 Fs +F+s P  + +l+++++++g +l
  KKY17713.1 244 FSIEFTSLPALIAFLDNLHVHQGPHL 269
                 9******************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2627.65
//
Query:       KKY17714.1  [L=841]
Description: putative clathrin-coated vesiclec protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.3e-154  514.2   0.0     3e-154  513.8   0.0    1.2  1  ChAPs            ChAPs (Chs5p-Arf1p-binding proteins)
    2.5e-34  117.9   0.0    1.1e-22   80.2   0.0    2.5  2  UQ_con           Ubiquitin-conjugating enzyme
    0.00041   20.8   0.1        1.7    9.2   0.1    3.0  2  TPR_19           Tetratricopeptide repeat
     0.0013   19.4   7.3        4.4    8.4   0.0    5.0  4  TPR_14           Tetratricopeptide repeat
     0.0019   18.2   0.8       0.13   12.5   0.1    3.7  5  TPR_2            Tetratricopeptide repeat
     0.0024   18.0   0.0     0.0075   16.4   0.0    1.8  1  PEP-utilisers_N  PEP-utilising enzyme, N-terminal
  ------ inclusion threshold ------
      0.016   15.0   0.0        3.4    7.7   0.0    3.2  3  TPR_1            Tetratricopeptide repeat
      0.082   13.2   0.0        2.5    8.6   0.0    3.3  4  TPR_8            Tetratricopeptide repeat
       0.17   12.3   0.0       0.55   10.7   0.0    1.9  1  YejG             YejG-like protein


Domain annotation for each model (and alignments):
>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  513.8   0.0  1.5e-157    3e-154       2     395 .]      50     425 ..      49     425 .. 0.99

  Alignments for each domain:
  == domain 1  score: 513.8 bits;  conditional E-value: 1.5e-157
                 XXXEEEEEEEXXXXSXHHHHHHHHHHHHCCSSSSXXXTTSXXXXXECCEEEEEEEETTTTEEEEEEEESSXXEEEEEEETTSXBEEXHHHHHHHHHHHH CS
       ChAPs   2 keiGtyfyvtGvdtSssasiavylkqlteslseksqlwFgkkktfkvskisyctyNaFskvDvrvevkiPGsvesyvvdergekeeatdelWaEtflsg 100
                 k++G+y++vtGvd+Sssas+a+y+++lt+s           +k++kv ++ yc+yNaFs++D+rvevkiPG+vesy++derg+k+  +d+lW+Etfl++
  KKY17714.1  50 KQTGVYHHVTGVDASSSASLAAYVNTLTQSP---------VDKSHKVVSGLYCCYNAFSHLDMRVEVKIPGGVESYCIDERGDKRVDSDALWLETFLCA 139
                 799***************************9.........67889****************************************************** PP

                 HHHHHHHHHTTTTTTS----TTEEE--GGG--SSS-HHHHHHHTHHHHTTCGGGG---TT-SS--SSSSHHHHHHHHHHHHHT-HHHHHHHHHHHHTT- CS
       ChAPs 101 vlRsllladdnadddevqklvetrklnPltsgelekkaelFlkafeklfekgvklgadsevqvptlvnNyLvetllklvrltkrydralellekLkeee 199
                 +lR++ +add ++ d+++k+v++r++nP+t++e+e+k   Fl+a+eklf++g +lg+d+e+qvp++v+N+L++++lk++++t ry ++++l+ekL++++
  KKY17714.1 140 ILRAYSYADD-GSGDTIKKIVGVRRFNPITNTETEHK---FLDAAEKLFFNGRQLGSDPEIQVPNIVSNHLTSGILKYIKTTGRYASGINLFEKLRTRD 234
                 **********.999***********************...*********************************************************** PP

                 GGGHHHHHHHHHHTT-HHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHSS--HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHT----S CS
       ChAPs 200 pevvillarvllladeEvdavkllneeleeeekdaelLllqaefllskkkeelAlevakravksaPsefktWalLvkvYikledienALltLNscPmft 298
                  ev++lla+vl++ deEv+av+ll+++l+e ++d++lL++q++f+lsk + e+Ale+akr+v++aPsef tWa+L++vY++le+++ ALltLNscPmf+
  KKY17714.1 235 IEVSSLLAEVLIAGDEEVQAVRLLHDALQEIPMDYALLDCQSKFCLSKGEGEMALECAKRGVTAAPSEFGTWARLAEVYVTLEQWDLALLTLNSCPMFS 333
                 *************************************************************************************************** PP

                 S--------SS-------EB---TTSS--TT--------SS---S---HHHHT-TTTT--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHB-XXXXXX CS
       ChAPs 299 ykekdvlrriapakseddlhlPlpldvvldevselnssevteeqkevdpsLlrlkaanlkstfakaYelLteivkkiGWeeLLkvRskvFvmeeEYr 395
                 y++kd  r+++p +    + lP+ +d+++de++e ++++  e  + v+psL +l+aa +++tf kaY+lLtei++kiGW++LLk+Rs+vFvmeeEYr
  KKY17714.1 334 YQDKDSPRMPEPSR----VLLPVLADTMMDEIDEGQPKQ-GEPYDIVHPSLRKLQAATYQGTFLKAYSLLTEIASKIGWDQLLKIRSQVFVMEEEYR 425
                 **************....*******************99.999*****************************************************8 PP

>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   5.5e-26   1.1e-22       4      77 ..     656     729 ..     654     743 .. 0.97
   2 !   35.0   0.0     5e-12     1e-08      77     139 ..     770     832 ..     767     833 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 5.5e-26
                 HHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBET CS
      UQ_con   4 kelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdk 77 
                 kel+el++++p+gis++l+d+++l+ wk+ i+gpe+tpY+ g+F+l l++p++YP+kpP+++f tki+HPnv++
  KKY17714.1 656 KELQELTTTPPDGISVSLIDESDLYAWKASIQGPEGTPYAAGTFHLLLTLPQSYPFKPPTLSFLTKIYHPNVSN 729
                 89**********************************************************************96 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 5e-12
                 TTSBB-CGGGSTTT--TTSHHHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
      UQ_con  77 ksGevcldiLkeekWspaltlesvllsiqsLlaepnpesplnkeaakllkkdreeykkkvkey 139
                 ++G  cl  L+ + W+p+++++ +l    +Ll+epn ++++++++a+++k+dr++++k++key
  KKY17714.1 770 TTGLMCLGPLRPDAWKPSTKISAILEFARQLLREPNADDAVETRIADEYKNDRKAWEKEAKEY 832
                 58999*******************************************************987 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1   0.00085       1.7       5      57 ..     218     267 ..     217     273 .. 0.90
   2 !    8.2   0.0    0.0018       3.6      10      52 ..     288     330 ..     280     339 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00085
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 g+ya+ ++l+e++      + e+  lLAe+l+a  +  +A +lL ++++e p 
  KKY17714.1 218 GRYASGINLFEKL---RTRDIEVSSLLAEVLIAGDEEVQAVRLLHDALQEIPM 267
                 8999999*****9...788*************************999998876 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0018
      TPR_19  10 AlalleqalqedpknaearllLAeallalgqldeAealLdalp 52 
                 Al+  ++  +++p     +++LAe+++ l q+d A  +L+  p
  KKY17714.1 288 ALECAKRGVTAAPSEFGTWARLAEVYVTLEQWDLALLTLNSCP 330
                 555666666777888888999*****************99755 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.3     0.043        86       6      30 ..     240     264 ..     236     272 .. 0.89
   2 !    8.4   0.0    0.0022       4.4       4      43 ..     272     311 ..     268     312 .. 0.91
   3 ?    6.2   0.1     0.011        23       3      30 ..     569     596 ..     567     610 .. 0.83
   4 ?   -0.1   0.2       1.2   2.4e+03       5      22 ..     794     811 ..     791     829 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.043
      TPR_14   6 alaeallalGdpdeAiallrralal 30 
                 +lae+l a ++  +A++ll++al+ 
  KKY17714.1 240 LLAEVLIAGDEEVQAVRLLHDALQE 264
                 699********************96 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0022
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 l +  +++l  G+ + A+++++r + +aP++  +w +la+
  KKY17714.1 272 LDCQSKFCLSKGEGEMALECAKRGVTAAPSEFGTWARLAE 311
                 56778899999***************************97 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.011
      TPR_14   3 allalaeallalGdpdeAiallrralal 30 
                  +  l+++ ++l   d Ai++++++l+ 
  KKY17714.1 569 EWEILGDLAERLHHVDHAIEAYQQCLSV 596
                 5778999*****************9983 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 1.2
      TPR_14   5 lalaeallalGdpdeAia 22 
                 l+ a+ ll+  + d+A++
  KKY17714.1 794 LEFARQLLREPNADDAVE 811
                 667999999999999987 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.2     1e+04      15      27 ..     218     230 ..     217     232 .. 0.88
   2 ?   -3.4   0.0       7.6   1.5e+04       7      30 ..     241     264 ..     239     266 .. 0.74
   3 ?   -2.1   0.0         3     6e+03      11      32 ..     279     300 ..     271     301 .. 0.76
   4 ?    1.1   0.0      0.28   5.6e+02       4      21 ..     306     323 ..     304     327 .. 0.90
   5 !   12.5   0.1   6.3e-05      0.13       2      29 ..     568     595 ..     567     597 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.2
       TPR_2  15 gdyeeAleafekA 27 
                 g+y+  +++fek 
  KKY17714.1 218 GRYASGINLFEKL 230
                 999999****995 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.6
       TPR_2   7 lGlayyklgdyeeAleafekAlel 30 
                 l++++++ ++  +A++++  Al+ 
  KKY17714.1 241 LAEVLIAGDEEVQAVRLLHDALQE 264
                 666677777777899999999986 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3
       TPR_2  11 yyklgdyeeAleafekAleldP 32 
                 ++ +g+ e Ale+ ++ +  +P
  KKY17714.1 279 CLSKGEGEMALECAKRGVTAAP 300
                 566788899****999877666 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.28
       TPR_2   4 lynlGlayyklgdyeeAl 21 
                 + +l+++y  l +++ Al
  KKY17714.1 306 WARLAEVYVTLEQWDLAL 323
                 99*************997 PP

  == domain 5  score: 12.5 bits;  conditional E-value: 6.3e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAle 29 
                   +  lG+++++l + + A+ea++++l+
  KKY17714.1 568 AEWEILGDLAERLHHVDHAIEAYQQCLS 595
                 67999********************996 PP

>> PEP-utilisers_N  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.8e-06    0.0075      60     106 ..     791     837 ..     743     839 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.8e-06
                      HHHHHHHHHHHT-HHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHH CS
  PEP-utilisers_N  60 aaifeahlmlleDpelleeveerIregglnaeaAveevveefaaqfe 106
                      +ai+e  ++ll+ p+  ++ve+rI+++  n  +A+e+ ++e+ ++f+
       KKY17714.1 791 SAILEFARQLLREPNADDAVETRIADEYKNDRKAWEKEAKEYTKRFA 837
                      78*******************************************97 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.53   1.1e+03      12      32 ..     280     300 ..     279     301 .. 0.78
   2 ?    2.5   0.0     0.074   1.5e+02       3      21 ..     305     323 ..     305     327 .. 0.93
   3 ?    7.7   0.0    0.0017       3.4       7      30 ..     573     596 ..     567     597 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.53
                 HHTT-HHHHHHHHHHHHHHST CS
       TPR_1  12 fklgkydeAleyyekALelnP 32 
                 +++g+ + Ale+ ++ ++  P
  KKY17714.1 280 LSKGEGEMALECAKRGVTAAP 300
                 5678889*****999876655 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.074
                 HHHHHHHHHHHTT-HHHHH CS
       TPR_1   3 alynlGnayfklgkydeAl 21 
                 ++ +l+ +y  l+++d Al
  KKY17714.1 305 TWARLAEVYVTLEQWDLAL 323
                 599**************98 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0017
                 HHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekALel 30 
                 lG +  +l   d A+e+y+++L++
  KKY17714.1 573 LGDLAERLHHVDHAIEAYQQCLSV 596
                 78888899999**********986 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.6   7.1e+03      12      26 ..     215     229 ..     213     230 .. 0.87
   2 ?   -1.9   0.0       2.7   5.4e+03      12      33 ..     280     301 ..     277     302 .. 0.84
   3 ?   -1.0   0.0       1.4   2.8e+03       3      17 ..     305     319 ..     304     329 .. 0.79
   4 ?    8.6   0.0    0.0012       2.5       6      30 ..     572     596 ..     570     599 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.6
                 HHTT-HHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyek 26 
                 +++g+y + +  +ek
  KKY17714.1 215 KTTGRYASGINLFEK 229
                 578**********99 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.7
                 HHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyekaleldpd 33 
                 l++g+ e+A e+ ++ ++++p+
  KKY17714.1 280 LSKGEGEMALECAKRGVTAAPS 301
                 56788899*******9999985 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHTT-H CS
       TPR_8   3 ayynlgsiylklgdy 17 
                  + +l+ +y +l++ 
  KKY17714.1 305 TWARLAEVYVTLEQW 319
                 599******999875 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0012
                 HHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekalel 30 
                  lg++ + l   + A+e+y+++l+ 
  KKY17714.1 572 ILGDLAERLHHVDHAIEAYQQCLSV 596
                 6999999****************97 PP

>> YejG  YejG-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00028      0.55      47      98 ..     247     297 ..     214     303 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00028
        YejG  47 dgesawevlrelkqsladiqvesaivelegePCLflereDesaalCrlknlG 98 
                  g++ ++++r l+++l++i ++ a+++++++ CL  + e e+a  C+ + + 
  KKY17714.1 247 AGDEEVQAVRLLHDALQEIPMDYALLDCQSKFCLS-KGEGEMALECAKRGVT 297
                 3556678999***********************95.7788999999866554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (841 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1031  (0.0575046); expected 358.6 (0.02)
Passed bias filter:                      633  (0.0353059); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.49
# Mc/sec: 5162.95
//
Query:       KKY17715.1  [L=2072]
Description: putative transcriptional histone corepressor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   11.9   0.1       0.76    9.9   0.0    2.0  2  DUF220    Domain of unknown function DUF220
        0.2   11.4   1.3       0.75    9.5   1.3    2.0  1  TPR_11    TPR repeat
        2.7    8.0   4.9        5.7    6.9   0.2    3.5  4  TPR_1     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> DUF220  Domain of unknown function DUF220
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00013      0.76      13      73 .]    1159    1221 ..    1150    1221 .. 0.89
   2 ?   -2.2   0.0      0.78   4.6e+03       7      20 ..    1547    1560 ..    1545    1579 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00013
      DUF220   13 nrkdltvkykkekvmfmkvfeGsykveplyvDserlckk..rkpksreeYkkCsgGkGriask 73  
                  n kdl+ +  k++++ m++  Gsyk  p    ++r+ ++  r+p + +e  kC +G G i +k
  KKY17715.1 1159 NIKDLMRSDLKSTLEKMQQVMGSYKTSPPLSFNKRVINQylRSPINPTELYKCLKGTGDIPTK 1221
                  8899999999*****************9888889988764579***************99776 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.78
      DUF220    7 hlivdenrkdltvk 20  
                  h+i d+n+kdl + 
  KKY17715.1 1547 HVIYDDNEKDLAAA 1560
                  899*******9885 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.3   0.00013      0.75       9      38 ..      26      55 ..      26      56 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00013
      TPR_11  9 kyeeAieaYkkAlkldPdnaeayynLGlay 38
                ++eeA++ Y++Alkl ++ ++   + ++ay
  KKY17715.1 26 QIEEALKLYQNALKLHSQGPSYATEAAEAY 55
                79*************999887665555555 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.2   0.00096       5.7      16      31 ..      26      41 ..      26      43 .. 0.89
   2 ?   -2.3   0.0      0.81   4.8e+03      20      32 ..     154     166 ..     153     168 .. 0.76
   3 ?    1.1   0.0     0.068   4.1e+02       2      12 ..    1280    1290 ..    1279    1292 .. 0.86
   4 ?   -2.0   0.0      0.63   3.8e+03      19      28 ..    1317    1326 ..    1316    1327 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00096
                -HHHHHHHHHHHHHHS CS
       TPR_1 16 kydeAleyyekALeln 31
                + +eAl+ y+ AL+l 
  KKY17715.1 26 QIEEALKLYQNALKLH 41
                579***********96 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.81
                 HHHHHHHHHHHST CS
       TPR_1  20 AleyyekALelnP 32 
                 Al+ + +ALe + 
  KKY17715.1 154 ALQQFAQALERDD 166
                 8888889998875 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.068
                  HHHHHHHHHHH CS
       TPR_1    2 kalynlGnayf 12  
                  +++y+l+++y 
  KKY17715.1 1280 ETWYRLAQVYD 1290
                  79*******96 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 0.63
                  HHHHHHHHHH CS
       TPR_1   19 eAleyyekAL 28  
                   A+ +y  A+
  KKY17715.1 1317 NAIHCYTMAV 1326
                  69****9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2072 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       986  (0.0549947); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.42u 0.37s 00:00:01.79 Elapsed: 00:00:00.56
# Mc/sec: 11119.95
//
Query:       KKY17716.1  [L=621]
Description: putative hec ndc80p family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-55  186.2   0.0    5.6e-55  185.2   0.0    1.6  1  Ndc80_HEC       HEC/Ndc80p family
  ------ inclusion threshold ------
      0.011   16.2   9.2      0.011   16.2   9.2    4.5  5  DUF16           Protein of unknown function DUF16
      0.015   15.6   1.8      0.015   15.6   1.8    6.2  5  HalX            HalX domain
      0.079   13.4   0.7      0.079   13.4   0.7    5.7  6  FlaC_arch       Flagella accessory protein C (FlaC)
       0.26   10.8  50.0      0.073   12.6   2.3    3.8  3  Filament        Intermediate filament protein
       0.49   10.5  12.9      0.048   13.7   2.9    3.9  4  DUF1192         Protein of unknown function (DUF1192)
        0.5   10.8   4.0       0.54   10.7   1.4    2.4  2  Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
        1.4    9.0  29.4      0.044   13.8   4.7    4.6  4  DUF1664         Protein of unknown function (DUF1664)
        1.6    9.2  20.1         17    6.0   0.5    4.8  3  NPV_P10         Nucleopolyhedrovirus P10 protein
        3.1    7.7  16.2        1.3    8.9   0.1    6.0  7  HSBP1           Heat shock factor binding protein 1
        3.3    7.7  16.0       0.16   11.9   3.3    3.7  3  Sugarporin_N    Maltoporin periplasmic N-terminal extension
        7.6    7.1  10.8        2.7    8.6   0.8    3.8  3  MerR-DNA-bind   MerR, DNA binding


Domain annotation for each model (and alignments):
>> Ndc80_HEC  HEC/Ndc80p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.2   0.0   3.7e-58   5.6e-55      11     152 ..       2     146 ..       1     147 [. 0.98

  Alignments for each domain:
  == domain 1  score: 185.2 bits;  conditional E-value: 3.7e-58
   Ndc80_HEC  11 skasffsesekaasverDprplrdksfqseliqellefLkennfe....hsisaktlksPsqkdfssifkfLykrldpsyefqkkieeevvkilkelrY 105
                 +++sff++++ aa v+rDprpl+d+ fq+++ qell++L++nnfe    +s+s+ +lksP+qkdf+++f++Ly+rldp+y+f k i+ ev++ilk+lrY
  KKY17716.1   2 AHQSFFTQAPAAAGVPRDPRPLKDRGFQMRIGQELLDYLTHNNFEmemkYSLSRDVLKSPTQKDFNYMFQWLYRRLDPGYRFMKGIDAEVPPILKQLRY 100
                 589************************************************************************************************ PP

   Ndc80_HEC 106 PfaesisKsqlaAvgtphtwptllaaLhWlvelaklleelsesktde 152
                 Pf++si+Ksq++Avg+++ w  +l++LhW+++la++ ++++  ++de
  KKY17716.1 101 PFEKSITKSQITAVGGNN-WYIFLGVLHWMMQLAQMQDRFNAGAYDE 146
                 ****************88.**********************999987 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2       1.6   2.4e+03      49      69 ..     208     228 ..     187     247 .. 0.44
   2 ?   16.2   9.2   7.6e-06     0.011      22      84 ..     247     330 ..     245     350 .. 0.77
   3 ?    0.5   0.3      0.55   8.3e+02      25      45 ..     334     354 ..     309     366 .. 0.59
   4 ?    6.1   6.8      0.01        15      22      96 ..     437     515 ..     435     525 .. 0.62
   5 ?   -0.5   1.2       1.1   1.7e+03      41      79 ..     538     576 ..     521     599 .. 0.56

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHHHHHHHHH CS
       DUF16  49 qinkleqkvekqgekikelkv 69 
                 +++ le + +++ ++++el++
  KKY17716.1 208 EMQMLEAENKNLSDQLEELEK 228
                 222222222222222222222 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 7.6e-06
                 HHHHHHB-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH............................H CS
       DUF16  22 rkqlnefkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeeln.....................kvdet 84 
                 +++++e+ ++ + ++ k e++++ l+ +i+k e + +k +e+ + l++ +++qg +++                     ++det
  KKY17716.1 247 KRKFEEYNHNVQGKIDKYENRIKLLEDEIAKAEAELSKAEEERMSLQQSVDKQGLNIQdidrmnterdrltravddtanNLDET 330
                 689***************************************************999988855555554444444444444444 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.55
                 HHHB-..BHHHHHHHHHHHH. CS
       DUF16  25 lnefkdsnkqrLkkieakvdk 45 
                   +    + qrL+++ea+++k
  KKY17716.1 334 VLDAEAATAQRLEELEAQIKK 354
                 222223355666666666554 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.01
                 HHHHHH.B-........BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHH.HHHHHH.......HHHHHHHHHHHHH CS
       DUF16  22 rkqlne.fkds......nkqrLkkieakvdklgeqinkleqkvekqgekikelkve.qkaqgeelnkvdetleliletLqkin 96 
                 rk+ ne  k+       n + L  i + ++ +++++++l++ v++  e+ ++lk++ q aq        + +e + + L+++ 
  KKY17716.1 437 RKEVNErRKQAqesdlnNREFLDSIHEALQEKNVEVDALTHRVRTASEEYEKLKETtQTAQMT----SSSHIEKLEKRLAQMR 515
                 566666323334445536666778888888888999999999999888888888761334443....3334444444444444 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 1.1
                 HHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH... CS
       DUF16  41 akvdklgeqinkleqkvekqgekikelkveqkaqgeeln 79 
                   v+  ge  ++l+ k+e+  +++ + kv++++  e+++
  KKY17716.1 538 RLVQRVGEVREELHTKIENMLNEVIKFKVHIQKGLEDFE 576
                 344444444455555555544444455554444444443 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.6     0.067     1e+02      24      60 ..     196     232 ..     188     241 .. 0.80
   2 ?   -0.6   7.3       1.1   1.7e+03      38      61 ..     307     331 ..     264     338 .. 0.80
   3 ?    0.6   0.4      0.47   7.1e+02      28      46 ..     336     354 ..     331     356 .. 0.71
   4 ?    6.7   3.3    0.0061       9.2      19      55 ..     486     522 ..     471     526 .. 0.89
   5 ?   15.6   1.8   9.8e-06     0.015      20      60 ..     521     559 ..     520     565 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.067
        HalX  24 aekseaeLadseeYqeLearleelraqldetldeldd 60 
                 +e   ++ +  ee q Lea+   l +ql+e+  + +d
  KKY17716.1 196 TEFERSNARYIEEMQMLEAENKNLSDQLEELEKNAPD 232
                 6666777777799999*************99999766 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.1
        HalX  38 qeLearleelraqldetldeldd.a 61 
                 +++ ++ ++l + +d+t+++ld+  
  KKY17716.1 307 DRMNTERDRLTRAVDDTANNLDEtN 331
                 6777899*************99943 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.47
        HalX  28 eaeLadseeYqeLearlee 46 
                 +ae a  ++ +eLea++  
  KKY17716.1 336 DAEAATAQRLEELEAQIKK 354
                 5677777888888888765 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0061
        HalX  19 ravLeaekseaeLadseeYqeLearleelraqldetl 55 
                 + +L+     a++ +s   + Le rl+++ra lde +
  KKY17716.1 486 YEKLKETTQTAQMTSSSHIEKLEKRLAQMRAGLDEDV 522
                 6789999999************************976 PP

  == domain 5  score: 15.6 bits;  conditional E-value: 9.8e-06
        HalX  20 avLeaekseaeLadseeYqeLearleelraqldetldeldd 60 
                 +vLe+e  ++e++ + eY++L +r+ e+r++l + ++++ +
  KKY17716.1 521 DVLETE--QREMQTNLEYERLVQRVGEVREELHTKIENMLN 559
                 789886..779**************************9755 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.7   5.3e-05     0.079       7      42 ..     196     235 ..     190     236 .. 0.76
   2 ?    9.3   2.4   0.00098       1.5       1      38 [.     267     304 ..     260     309 .. 0.71
   3 ?   -2.2   0.0       3.9   5.9e+03       1      12 [.     344     355 ..     344     371 .. 0.83
   4 ?    1.1   0.4      0.35   5.2e+02       3      36 ..     459     492 ..     449     499 .. 0.73
   5 ?   -0.9   1.7       1.5   2.3e+03       2      31 ..     504     535 ..     503     564 .. 0.64
   6 ?   -0.9   0.1       1.5   2.2e+03       2      35 ..     543     577 ..     542     581 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.3e-05
   FlaC_arch   7 nklsklst....eletvkkeneelsksveelkenVkdlls 42 
                 +++++       e++++++en++ls+++eel++n  d+ +
  KKY17716.1 196 TEFERSNAryieEMQMLEAENKNLSDQLEELEKNAPDVAK 235
                 5555555555569********************9887765 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00098
   FlaC_arch   1 ridelEnklsklsteletvkkeneelsksveelkenVk 38 
                 ri+ lE ++ k + el+ +++e  +l++sv++   n++
  KKY17716.1 267 RIKLLEDEIAKAEAELSKAEEERMSLQQSVDKQGLNIQ 304
                 67777777777777777777777777777777555555 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.9
   FlaC_arch   1 ridelEnklskl 12 
                 r++elE +++k 
  KKY17716.1 344 RLEELEAQIKKY 355
                 788899888775 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.35
   FlaC_arch   3 delEnklsklsteletvkkeneelsksveelken 36 
                 d++ + l++  +e++ +       s++ e+lke+
  KKY17716.1 459 DSIHEALQEKNVEVDALTHRVRTASEEYEKLKET 492
                 5566667777777777777777777777777776 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 1.5
   FlaC_arch   2 idelEnklsklstelet..vkkeneelsksve 31 
                 i++lE++l ++   l+   +++e+ e+++++e
  KKY17716.1 504 IEKLEKRLAQMRAGLDEdvLETEQREMQTNLE 535
                 66777777777775532225666666655553 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 1.5
   FlaC_arch   2 idelEnkls.klsteletvkkeneelsksveelke 35 
                 ++e+ ++l  k++ +l+ v k   +++k +e+ +e
  KKY17716.1 543 VGEVREELHtKIENMLNEVIKFKVHIQKGLEDFEE 577
                 55555555325666666666666666666666555 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.3   4.9e-05     0.073      14      66 ..     203     253 ..     198     260 .. 0.85
   2 ?   11.6  15.2    0.0001      0.15     169     288 ..     241     358 ..     232     361 .. 0.88
   3 ?    0.4  16.2      0.26   3.9e+02     196     288 ..     443     539 ..     432     554 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX CS
    Filament  14 AsYidkVraLEqenkeLeakieeleekksaevsklkelyekeleelrkqldel 66 
                 A Yi+  ++LE+enk+L  ++eele++  + v+kl+++++  le+ +++ +e 
  KKY17716.1 203 ARYIEEMQMLEAENKNLSDQLEELEKN-APDVAKLDRHFQ-ILEDDKRKFEEY 253
                 89**********************998.899998888775.677777776665 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.0001
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 169 eilkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklsel 267
                 +il++ ++++ee  ++ + ++ + y+++++ l+++++k +++l++a+ee + l++++++   +++++  ++    +  + + +  +++l+++++++ + 
  KKY17716.1 241 QILEDDKRKFEEYNHNVQGKI-DKYENRIKLLEDEIAKAEAELSKAEEERMSLQQSVDKQGLNIQDIDRMNTERDRLTRAV-DDTANNLDETNRQVLDA 337
                 799999*****9866655555.57********************************************9998876655555.5567889999999**** PP

                 HHHHHHHHHHHHHHHHHHHHH CS
    Filament 268 eeelaeireemarqlreYqeL 288
                 e++ a+  ee+++q++ Y+ L
  KKY17716.1 338 EAATAQRLEELEAQIKKYNLL 358
                 ******************876 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.26
                 XXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHHH CS
    Filament 196 kleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklse....leeelaeireemarqlreYqeL 288
                 + +++qe+  +n e l s +e ++e + ++++l++ +    ++ ++l+++ + ++ + ++ +ekl++ l++    l+e++ e+ ++  + + eY++L
  KKY17716.1 443 RRKQAQESDLNNREFLDSIHEALQEKNVEVDALTHRVRTASEEYEKLKETTQTAQMTSSSHIEKLEKRLAQmragLDEDVLETEQREMQTNLEYERL 539
                 4556666666677777777777777777777777777777777777777777777777777776666665522224556666666555566677776 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.9   3.2e-05     0.048      26      50 ..     265     289 ..     261     291 .. 0.90
   2 ?   -2.2   0.1         3   4.5e+03      22      47 ..     472     497 ..     470     503 .. 0.81
   3 ?   -2.2   0.2       3.1   4.6e+03      22      34 ..     504     516 ..     484     517 .. 0.76
   4 ?    1.1   0.1      0.28   4.2e+02      23      45 ..     548     570 ..     547     573 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.2e-05
     DUF1192  26 eerIalLeaEIaRleaaiakkkasr 50 
                 e+rI+lLe+EIa++ea+++k+++ r
  KKY17716.1 265 ENRIKLLEDEIAKAEAELSKAEEER 289
                 79******************99877 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3
     DUF1192  22 veELeerIalLeaEIaRleaaiakkk 47 
                 v+ L+ r+ +  +E ++l++++++++
  KKY17716.1 472 VDALTHRVRTASEEYEKLKETTQTAQ 497
                 67789999999999999999888766 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.1
     DUF1192  22 veELeerIalLea 34 
                 +e Le+r a+++a
  KKY17716.1 504 IEKLEKRLAQMRA 516
                 6778888888875 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.28
     DUF1192  23 eELeerIalLeaEIaRleaaiak 45 
                 eEL++ I+ +  E+ + + +i+k
  KKY17716.1 548 EELHTKIENMLNEVIKFKVHIQK 570
                 7*************999888875 PP

>> Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.4   0.00036      0.54      12      88 ..     433     508 ..     430     510 .. 0.80
   2 ?   -2.4   0.1       4.3   6.4e+03      54      72 ..     548     566 ..     528     584 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00036
                     HHHHHHH..HHHHHHH....SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSSSS---.-S---TT-XX CS
  Myb_DNA-bind_4  12 Lieawgerilelrfqe..rgkkrnkklWeevaeamaergykrspeqCkeKienLkkrYkkekerekgsg.sswpffeeld 88 
                     Li++++e  +++r+++  ++ + n++  +++ ea++e+++    + + +++++ + +Y+k+ke+ +  + +s  + e+l+
      KKY17716.1 433 LISLRKE--VNERRKQaqESDLNNREFLDSIHEALQEKNV--EVDALTHRVRTASEEYEKLKETTQTAQmTSSSHIEKLE 508
                     9999999..444444456699999999***********99..556799***************86555437888888886 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.3
                     HHHHHHHHHHHHHHHCSSS CS
  Myb_DNA-bind_4  54 eqCkeKienLkkrYkkeke 72 
                     e++++Kien+ ++  k k 
      KKY17716.1 548 EELHTKIENMLNEVIKFKV 566
                     5677888888766555554 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   4.7     3e-05     0.044      31     121 ..     211     307 ..     206     310 .. 0.85
   2 ?    6.5   0.9    0.0055       8.2      31      79 ..     308     356 ..     298     364 .. 0.81
   3 ?    1.4   2.1      0.21   3.2e+02      68     107 ..     458     497 ..     427     517 .. 0.49
   4 ?    0.4   6.4      0.43   6.5e+02      51     120 ..     487     557 ..     473     594 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3e-05
     DUF1664  31 lmfvTkrslsdavesvskq......leqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerie 121
                 ++ + +++lsd +e++ k+      l++  + l++ kr++++  ++v+ k+d+ ++ +k +++e+++++ +ls+ +e+  s+++ v + + ++++i+
  KKY17716.1 211 MLEAENKNLSDQLEELEKNapdvakLDRHFQILEDDKRKFEEYNHNVQGKIDKYENRIKLLEDEIAKAEAELSKAEEERMSLQQSVDKQGLNIQDID 307
                 55567889999998888752222226666699******************************************************99999888886 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0055
     DUF1664  31 lmfvTkrslsdavesvskqleqvseslaatkrhLssridrvdkkldeqk 79 
                  m   +  l+ av++ +++l++   ++ ++    ++r++++++++++ +
  KKY17716.1 308 RMNTERDRLTRAVDDTANNLDETNRQVLDAEAATAQRLEELEAQIKKYN 356
                 3666777899*******************************99998866 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.21
     DUF1664  68 idrvdkkldeqkeiskeikeevtevredlseigedvesvk 107
                 +d++ + l+e +    ++++ v +++e+ ++++e  ++ +
  KKY17716.1 458 LDSIHEALQEKNVEVDALTHRVRTASEEYEKLKETTQTAQ 497
                 3333444444444444444444444444444444333322 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.43
     DUF1664  51 eqvseslaatkrhLssridrvdkkldeqkeiske..ikeevtevredlseigedvesvkeavegleskleri 120
                 e+++e+ ++++   ss+i++++k+l ++ +   e  ++ e  e++ +l+  ++ v+ v e+ e+l +k+e++
  KKY17716.1 487 EKLKETTQTAQMTSSSHIEKLEKRLAQMRAGLDEdvLETEQREMQTNLE-YERLVQRVGEVREELHTKIENM 557
                 5555555555555555555555555544432211112222222222222.2223333333334444444433 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.5     0.011        17      21      48 ..     217     244 ..     207     287 .. 0.81
   2 ?    5.6   4.8     0.014        21      22      60 ..     291     329 ..     255     365 .. 0.75
   3 ?    3.1   2.1     0.086   1.3e+02       6      58 ..     458     511 ..     453     570 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.011
     NPV_P10  21 dalqqqvddvqenlpdvtelnekLdaqs 48 
                 + l++q++++++n pdv +l  +++ + 
  KKY17716.1 217 KNLSDQLEELEKNAPDVAKLDRHFQILE 244
                 56899***********997776655444 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.014
     NPV_P10  22 alqqqvddvqenlpdvtelnekLdaqsaqLaeletkven 60 
                 +lqq+vd+   n++d++ +n++ d+++ ++++  +++++
  KKY17716.1 291 SLQQSVDKQGLNIQDIDRMNTERDRLTRAVDDTANNLDE 329
                 566666666666666666666666666666666655554 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.086
     NPV_P10   6 LlvIradikavddkVdalqqqvddvqenlpdvtelnekLdaq.saqLaeletkv 58 
                 L  I ++ ++ +  Vdal ++v   +e+ ++++e ++  +   s  +++le+ +
  KKY17716.1 458 LDSIHEALQEKNVEVDALTHRVRTASEEYEKLKETTQTAQMTsSSHIEKLEKRL 511
                 667889999999999999999988888888777665544433133445555544 PP

>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.5       0.1   1.5e+02      11      19 ..     132     140 ..     130     141 .. 0.89
   2 ?   -0.7   0.0      0.91   1.4e+03      32      42 ..     219     229 ..     217     235 .. 0.80
   3 ?    8.9   0.1   0.00088       1.3      12      45 ..     244     277 ..     241     281 .. 0.88
   4 ?   -1.2   0.1       1.3   1.9e+03      17      42 ..     308     333 ..     304     342 .. 0.65
   5 ?    1.2   0.2      0.22   3.3e+02      34      45 ..     343     354 ..     314     356 .. 0.87
   6 ?   -0.6   0.0      0.84   1.3e+03      33      46 ..     501     514 ..     497     517 .. 0.84
   7 ?   -1.2   0.0       1.2   1.9e+03       2      13 ..     549     560 ..     539     564 .. 0.62

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.1
       HSBP1  11 LqqlqdkFq 19 
                 L q+qd+F+
  KKY17716.1 132 LAQMQDRFN 140
                 89******7 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.91
       HSBP1  32 MssriDdLEks 42 
                 +s  +++LEk+
  KKY17716.1 219 LSDQLEELEKN 229
                 78899*****9 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00088
       HSBP1  12 qqlqdkFqtmsdqilsriDdMssriDdLEksiad 45 
                 ++ + kF++  +++ ++iD  ++ri  LE  ia+
  KKY17716.1 244 EDDKRKFEEYNHNVQGKIDKYENRIKLLEDEIAK 277
                 55578*************************9986 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 1.3
       HSBP1  17 kFqtmsdqilsriDdMssriDdLEks 42 
                 +++t  d ++  +Dd  + +D+  ++
  KKY17716.1 308 RMNTERDRLTRAVDDTANNLDETNRQ 333
                 55555566666777777777765555 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.22
       HSBP1  34 sriDdLEksiad 45 
                 +r+++LE++i++
  KKY17716.1 343 QRLEELEAQIKK 354
                 799999999975 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 0.84
       HSBP1  33 ssriDdLEksiadl 46 
                 ss i+ LEk +a++
  KKY17716.1 501 SSHIEKLEKRLAQM 514
                 68899****99875 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 1.2
       HSBP1   2 eLtavVenlLqq 13 
                 eL + +en+L++
  KKY17716.1 549 ELHTKIENMLNE 560
                 444444555544 PP

>> Sugarporin_N  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   3.3   0.00011      0.16      29      52 ..     265     288 ..     264     291 .. 0.95
   2 ?   -0.5   0.9       0.8   1.2e+03      30      38 ..     343     351 ..     335     354 .. 0.81
   3 ?    2.6   0.2     0.088   1.3e+02      32      41 ..     504     513 ..     489     528 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
  Sugarporin_N  29 EaRLaaLEkrLqeAeqraqaAear 52 
                   E R+ +LE + ++Ae+++++Ae++
    KKY17716.1 265 ENRIKLLEDEIAKAEAELSKAEEE 288
                   99********************87 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.8
  Sugarporin_N  30 aRLaaLEkr 38 
                   +RL+ LE+ 
    KKY17716.1 343 QRLEELEAQ 351
                   899999986 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.088
  Sugarporin_N  32 LaaLEkrLqe 41 
                   +++LEkrL++
    KKY17716.1 504 IEKLEKRLAQ 513
                   6789999987 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       6.7     1e+04      42      56 ..     213     227 ..     201     239 .. 0.58
   2 ?    8.6   0.8    0.0018       2.7      29      61 ..     329     361 ..     303     364 .. 0.86
   3 ?    3.2   0.7     0.089   1.3e+02      31      57 ..     490     516 ..     458     520 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 6.7
                    HHHHHHHHHHHHHHH CS
  MerR-DNA-bind  42 arklaeleeriaeLq 56 
                    ++  + l  +++eL+
     KKY17716.1 213 EAENKNLSDQLEELE 227
                    333334444444443 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0018
                    STTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind  29 drappcqdvrallarklaeleeriaeLqalrae 61 
                    + +++  d++a +a++l+ele++i++   l ++
     KKY17716.1 329 ETNRQVLDAEAATAQRLEELEAQIKKYNLLCYQ 361
                    4667777999**************988777665 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.089
                    TTBHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind  31 appcqdvrallarklaeleeriaeLqa 57 
                    + + q ++  +  ++++le+r+a+++a
     KKY17716.1 490 KETTQTAQMTSSSHIEKLEKRLAQMRA 516
                    566677777788888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2374  (0.132411); expected 358.6 (0.02)
Passed bias filter:                      697  (0.0388756); expected 358.6 (0.02)
Passed Vit filter:                       118  (0.00658152); expected 17.9 (0.001)
Passed Fwd filter:                        73  (0.00407162); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.44u 0.45s 00:00:01.89 Elapsed: 00:00:00.66
# Mc/sec: 2852.48
//
Query:       KKY17717.1  [L=850]
Description: putative kinesin family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-58  196.2   0.0    9.9e-58  195.6   0.0    1.3  1  Kinesin         Kinesin motor domain
    1.2e-11   44.8   0.0    2.8e-09   37.1   0.0    2.5  2  Microtub_bd     Microtubule binding
     0.0013   18.8   1.2     0.0035   17.4   1.2    1.8  1  bZIP_2          Basic region leucine zipper
     0.0016   18.3   7.4     0.0016   18.3   7.4    1.7  1  KASH_CCD        Coiled-coil region of CCDC155 or KASH
     0.0092   16.1   0.6      0.043   13.9   0.1    2.4  2  bZIP_1          bZIP transcription factor
  ------ inclusion threshold ------
      0.095   12.8   8.2        1.3    9.1   1.8    2.5  2  DUF87           Helicase HerA, central domain
      0.096   12.8   1.9        0.3   11.2   1.9    1.9  1  PspB            Phage shock protein B
       0.14   11.7   7.6      0.078   12.6   5.2    1.7  2  CENP-F_N        Cenp-F N-terminal domain
       0.32   11.2   3.4       0.55   10.5   0.4    2.3  2  KLRAQ           Predicted coiled-coil domain-containing prote
       0.69    9.7   5.6       0.13   12.1   0.6    2.2  2  DivIC           Septum formation initiator
        2.4    8.2  13.0      0.072   13.1   0.4    2.5  2  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.6   0.0   6.1e-61   9.9e-58      24     333 .]      50     567 ..      15     567 .. 0.89

  Alignments for each domain:
  == domain 1  score: 195.6 bits;  conditional E-value: 6.1e-61
                 CTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHH.HHHHHHHHHT.TSEEEEEEEESTTSSHHHHHTBCTTTSBSHHHHHHHHHHHHHHHCTTT CS
     Kinesin  24 kkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeet.akplvesvle.GynatifaYGqtgsGKTyTmegkeeeeeGiipraleelFesikkekee 120
                  ++ + +  +++++++ ++f F kvf+e+a+q +++e + + +++esvl+ G  +++ + G+tgsGK++T+ g+ ++++G+++++l+ +++s+ ++ ++
  KKY17717.1  50 PTHITLQPPNDSRKRAVERFGFTKVFQENASQLDLFEGAgTVEILESVLKkGRDGLVATLGVTGSGKSHTILGS-KTQRGLTQMSLDMIYKSLGSKIRR 147
                 455566667788899999*******************8745799****9549*********************8.999***************997766 PP

                 H.................................................................................................. CS
     Kinesin 121 k.................................................................................................. 121
                                                                                                                    
  KKY17717.1 148 Vdhpelpnnnnllaalqasdhseatlssassflesiygdaergrasraqtpmpggfsraqtpmtvrnpilqlpgsfpsaadddhsrvpypdlypshfsp 246
                 699************************************************************************************************ PP

                 ................................................................................EEEEEEEEEEEEEETTEEE CS
     Kinesin 122 ................................................................................ekefsvkvsylEiYneeiy 140
                                                                                                 e+e+ v vs++E+Yn++i+
  KKY17717.1 247 smhiprgdgignsplspksrfllpsqrpfwnrnsfvhkkhsankyllketygstrrpplprssmlpqspcvshhaveldsESEYAVVVSMYEVYNDRIF 345
                 ********************************************************************************9****************** PP

                 ETTSTTT...................TSTSS..EBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEE CS
     Kinesin 141 DLLeskk...................skkkk..klkiredskkgevyvkgltevevksaeevlellekgeknrkvaetklneeSSRSHavftitleqkn 218
                 DLL+ +                    +  ++    k +e s   + +v+gl++v + s+ee++ +le+g ++r+va t  n+ SSRSH  f i+++++ 
  KKY17717.1 346 DLLSLSMlpngpasntrqgtqlqkdlR--RRplLFKSTELSPD-RKVVAGLRKVICGSYEEAMMVLETGLTERRVAGTGSNSVSSRSHGFFCIEVKKNL 441
                 ****99999****99999987754321..22112233333332.579************************************************9988 PP

                 TTTTTC.EEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHT..CCTSTSCGGGSHHHHHT..........GGGHSSSSEE CS
     Kinesin 219 lkeete.ekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaek..kkskhipYRdSkLTrlL..........qdsLgGnskt 304
                 + ++ +  + + ++l++vDLAGsEra++++ ++g++l Ea++iN+SL+ Lg++++  ++    k +++pYR++kLT+lL          q+s    +k 
  KKY17717.1 442 SPRTWDgGNWTGGTLSIVDLAGSERARSAK-TTGSTLAEAGKINESLMYLGQCLQLQSNFhsDKPTVVPYRQCKLTELLfsnsfptsssQSSYRTPQKA 539
                 76666666699**************99999.57999*****************9865554778999***********9976666666666667778899 PP

                 EEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 305 lmivtvspssenleetlstlkfaerakei 333
                 +mivt +p+  +++ t + l++++ a+e+
  KKY17717.1 540 TMIVTADPQ-GDFNATSQILRYSALAREV 567
                 ********5.89***********999986 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   1.7e-12   2.8e-09      43     123 ..      51     143 ..      10     151 .. 0.78
   2 ?    5.0   0.0     0.013        22     126     149 .]     325     348 ..     313     348 .. 0.87

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 1.7e-12
                  T............TTTEEEE-SEEEECTTHCCCCCCCCH..HHHHHHH.TT--EEEEEEES................ST-HCHHHHHHHHHHC CS
  Microtub_bd  43 e.........eekkkkkefsFdrvfeseseqeevfeeis..qlvqsal.dgynvcifaygqTGsGKtyTmegeeeeagmipraveeifetise 123
                  +         + k+  ++f F++vf+++++q ++fe      +++s+l +g +  + ++g TGsGK++T+ g+++++g ++ ++++i++ + +
   KKY17717.1  51 ThitlqppndSRKRAVERFGFTKVFQENASQLDLFEGAGtvEILESVLkKGRDGLVATLGVTGSGKSHTILGSKTQRGLTQMSLDMIYKSLGS 143
                  13333345567788999******************976511689****999**********************************99998765 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.013
                  SCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd 126 ekgwkyeielqfveiynekvqDlL 149
                  + + +y++ +++ e+yn+++ DlL
   KKY17717.1 325 DSESEYAVVVSMYEVYNDRIFDLL 348
                  46789******************8 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.2   2.2e-06    0.0035      32      54 .]     708     730 ..     703     730 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.2e-06
                 HHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  32 ervkeLeeeNaqLrqkveqLeke 54 
                 +rv++Le+eN+ Lr+++e+Le+e
  KKY17717.1 708 QRVEQLERENDSLRARIEALERE 730
                 8********************98 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   7.4     1e-06    0.0016      35     140 ..     656     759 ..     637     778 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1e-06
    KASH_CCD  35 eetnakLteeieeLkkklkstQqalqkaklleeEleel.kalvkeleEkrarlkaqnkqlekenqsLiakiesLqeenikllaekdelkkklkeLlkek 132
                 +e  a++  e e+L+ +    Q  l+ ++ l+  ++ l +  +   e++ a   ++ +qle+en+sL+a+ie+L+ e+ + ++ +    + + +Llk  
  KKY17717.1 656 NEMEARI--EEEKLRYRQAWEQEKLKGEEFLDGKIDILeRGGIAIAEDSTATSDQRVEQLERENDSLRARIEALEREI-QTRSPTKRTTRSSTQLLKAA 751
                 3444444..445799999999**************9994556888888899999999*****************8885.67778888888899999999 PP

    KASH_CCD 133 aeLkkqlh 140
                 +eL kq  
  KKY17717.1 752 NELNKQFI 759
                 9***9975 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       3.8   6.2e+03      34      34 ..     607     607 ..     584     624 .. 0.46
   2 !   13.9   0.1   2.6e-05     0.043      33      57 ..     708     732 ..     703     737 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.8
                 H CS
      bZIP_1  34 r 34 
                 +
  KKY17717.1 607 E 607
                 2 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  33 rrvkaLekeNksLkseleelkkeve 57 
                 +rv++Le eN sL+ ++e l+ e++
  KKY17717.1 708 QRVEQLERENDSLRARIEALEREIQ 732
                 8*********************998 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.5    0.0038       6.2      27      40 ..     107     120 ..     105     121 .. 0.89
   2 ?    9.1   1.8   0.00077       1.3      55     202 ..     542     756 ..     529     764 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0038
       DUF87  27 AilgsTGsGKSntv 40 
                 A lg TGsGKS+t+
  KKY17717.1 107 ATLGVTGSGKSHTI 120
                 789*********95 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00077
       DUF87  55 ililDpHGEYgkal...............................ekllsekvkvitpspsa...........................kdkelkinpw 95 
                 i+  Dp+G++ + +                                               a                           ++ ++++   
  KKY17717.1 542 IVTADPQGDFNATSqilrysalarevtvprvpsttsqilssttnkS---------------AasdgrstpyseelelavneiarlseetDNLTIRLAEE 625
                 4445777777777777776666666666554444433333333330...............13333344444444444444445555447777777778 PP

       DUF87  96 sldpeelldlleeddkpaaavqrsvleealdqakakeekeklssdepveklleelk............................kekeelrklknqaia 166
                 ++++ e+   l   +++a +++ +v ee++++++a+ e+ekl +++  e  +e+lk                            +    + ++ ++   
  KKY17717.1 626 EIKVTEISISLRAAEDKALSIEAEVREECWNEMEARIEEEKLRYRQAWE--QEKLKgeefldgkidilerggiaiaedstatsdQ----RVEQLEREND 718
                 899999988888877788899**************99999999999999..7888888999999999999999999999865433....3334444444 PP

       DUF87 167 rlldkledllrkggsf..snsstdliallleklekegk 202
                 +l +++e l r+ +++  ++ +t+  ++ll+ +++ +k
  KKY17717.1 719 SLRARIEALEREIQTRspTKRTTRSSTQLLKAANELNK 756
                 44444444444444443334666666666666666665 PP

>> PspB  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.9   0.00018       0.3      37      72 ..     704     739 ..     697     740 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00018
        PspB  37 aedekrLeellekAekleeRietLEriLdaespnwR 72 
                 a+  +r+e+l ++ + l++Rie+LEr +  +sp+ R
  KKY17717.1 704 ATSDQRVEQLERENDSLRARIEALEREIQTRSPTKR 739
                 667899************************999977 PP

>> CENP-F_N  Cenp-F N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.3   2.2e+03     134     154 ..     525     545 ..     517     568 .. 0.70
   2 ?   12.6   5.2   4.8e-05     0.078     135     304 ..     565     734 ..     550     736 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.3
    CENP-F_N 134 ssdvslsplstPqksfatplt 154
                 ++++s+s++ tPqk+ +  ++
  KKY17717.1 525 PTSSSQSSYRTPQKATMIVTA 545
                 5677899999**997655444 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.8e-05
    CENP-F_N 135 sdvslsplstPqksfatpltpsqkksdskleelqekynkeveerkrleaelkvlqvkkasqalaqstvshrdiarhqasssvfsWqqektpsrqssdaq 233
                 ++v++  + + ++++  ++t  +  sd +     e+ +  v+e  rl +e   l ++ a++ ++ + +s    a++  + s+ +  +e+  + + +  +
  KKY17717.1 565 REVTVPRVPSTTSQILSSTTNKSAASDGRSTPYSEELELAVNEIARLSEETDNLTIRLAEEEIKVTEISISLRAAEDKALSIEAEVREECWNEMEARIE 663
                 555555555556666777777788899999999999**********************99998888888777788888888888888888888888888 PP

    CENP-F_N 234 etplkrsfassqllweqeetpskrsvrsekkgsasslsedssssqlldqlkaqnqeLkskvkelelrLqaq 304
                 e +l+ + a  q     ee    +    e+ g a +  + ++s q ++ql   n  L+++++ le+++q++
  KKY17717.1 664 EEKLRYRQAWEQEKLKGEEFLDGKIDILERGGIAIAEDSTATSDQRVEQLERENDSLRARIEALEREIQTR 734
                 8888877777666666666666666666666777777777888899**********************986 PP

>> KLRAQ  Predicted coiled-coil domain-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.47   7.7e+02      33      76 ..     599     642 ..     592     667 .. 0.71
   2 ?   10.5   0.4   0.00034      0.55      39      83 ..     700     745 ..     690     759 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.47
       KLRAQ  33 eelkekeqslrkseqEvdsLtFrNkqLekrvellqeeleveekk 76 
                 eel    +++ + ++E+d Lt r    e +v+ +   l+ +e k
  KKY17717.1 599 EELELAVNEIARLSEETDNLTIRLAEEEIKVTEISISLRAAEDK 642
                 66777777889999999999999888888888877777776644 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00034
       KLRAQ  39 eqslrkseqEvdsLtFrNkqLekrvellqeelevee..kkvkskskn 83 
                 e s  +s+q v+ L+  N+ L  r+e+l  e+++++  k+ +++s+ 
  KKY17717.1 700 EDSTATSDQRVEQLERENDSLRARIEALEREIQTRSptKR-TTRSST 745
                 66777899999*********************99886444.455543 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.5       1.4   2.3e+03      25      44 ..     600     619 ..     598     626 .. 0.74
   2 ?   12.1   0.6   7.9e-05      0.13      23      48 ..     707     732 ..     703     736 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHHHHH CS
       DivIC  25 eiaalqaelaklkaeneeLe 44 
                 e++   +e+a+l++e ++L+
  KKY17717.1 600 ELELAVNEIARLSEETDNLT 619
                 56666788888888888886 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 7.9e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHC CS
       DivIC  23 kqeiaalqaelaklkaeneeLeaevk 48 
                 +q +++l++e+++l+a++e+Le+e++
  KKY17717.1 707 DQRVEQLERENDSLRARIEALEREIQ 732
                 6889********************96 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   6.2       1.3   2.1e+03      71     129 ..     604     663 ..     595     676 .. 0.72
   2 ?   13.1   0.4   4.4e-05     0.072      13      38 ..     711     736 ..     700     761 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.3
  CENP-F_leu_zip  71 leldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqe.kvqmkeeskaave 129
                        +++ l++e ++L+  l ++  +v e   +    e      E+e + +  +e++a++e
      KKY17717.1 604 AVNEIARLSEETDNLTIRLAEEEIKVTEISISLRAAEDKALSIEAEvREECWNEMEARIE 663
                     446788999*******************99887777665555555544555555555555 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.4e-05
  CENP-F_leu_zip  13 KeserkadsLkdkvenLerelemsee 38 
                      + er++dsL+ ++e+Lere+++   
      KKY17717.1 711 EQLERENDSLRARIEALEREIQTRSP 736
                     56799****************98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1108  (0.0617993); expected 358.6 (0.02)
Passed bias filter:                      631  (0.0351944); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.50
# Mc/sec: 5157.57
//
Query:       KKY17718.1  [L=533]
Description: putative mitochondrial chaperone bcs1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-49  168.0   0.1    3.2e-49  167.5   0.1    1.2  1  BCS1_N        BCS1 N terminal
    2.2e-18   67.0   0.0      4e-18   66.1   0.0    1.5  1  AAA           ATPase family associated with various cellular 
    3.1e-05   24.4   0.1    0.00011   22.6   0.0    2.0  2  AAA_16        AAA ATPase domain
    4.5e-05   22.8   0.0    8.2e-05   21.9   0.0    1.4  1  DUF815        Protein of unknown function (DUF815)
      0.004   17.1   0.0     0.0092   16.0   0.0    1.8  1  AAA_5         AAA domain (dynein-related subfamily)
     0.0051   16.3   0.0     0.0093   15.5   0.0    1.4  1  AAA_7         P-loop containing dynein motor region
     0.0062   16.4   0.0      0.013   15.4   0.0    1.5  1  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0064   16.2   0.0       0.06   13.1   0.0    2.2  2  AAA_24        AAA domain
     0.0065   16.1   0.0      0.016   14.8   0.0    1.7  1  AAA_25        AAA domain
     0.0097   16.5   0.0       0.02   15.4   0.0    1.6  1  AAA_18        AAA domain
  ------ inclusion threshold ------
      0.019   15.3   0.0      0.042   14.2   0.0    1.6  1  RNA_helicase  RNA helicase
      0.033   14.7   0.0       0.07   13.7   0.0    1.6  1  ABC_tran      ABC transporter
      0.033   13.9   0.0      0.079   12.7   0.0    1.6  1  AAA_29        P-loop containing region of AAA domain
      0.038   12.8   0.0       0.06   12.2   0.0    1.2  1  PPV_E1_C      Papillomavirus helicase
      0.074   12.4   0.0       0.14   11.5   0.0    1.4  1  ATPase        KaiC
       0.11   12.8   0.0       0.25   11.6   0.0    1.6  1  AAA_22        AAA domain
       0.11   12.6   0.0       0.23   11.6   0.0    1.6  1  AAA_33        AAA domain
       0.14   12.4   0.0        0.4   10.9   0.0    1.7  1  AAA_28        AAA domain
       0.15   12.2   0.0       0.32   11.1   0.0    1.6  1  MMR_HSR1      50S ribosome-binding GTPase
        0.2   11.4   0.0       0.33   10.7   0.0    1.3  1  AAA_11        AAA domain


Domain annotation for each model (and alignments):
>> BCS1_N  BCS1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.5   0.1   3.6e-52   3.2e-49       1     187 []      54     254 ..      54     254 .. 0.97

  Alignments for each domain:
  == domain 1  score: 167.5 bits;  conditional E-value: 3.6e-52
      BCS1_N   1 lgallaaarrllselaslirrrflvsveissdDeaydwvlaWlsaq................................pasrrsrelsvetrtksrssd 67 
                 lg+l+++ +r+l+++asl+r+r+lv+vei+ +De+y+w+l+W++++                                ++++r+r+ls++t++  +s+ 
  KKY17718.1  54 LGTLATFGQRGLRKGASLLRQRMLVDVEINVKDESYPWFLEWMTQHqrsqlarspinrgpavhgkpiakpgafesllqKFTPRMRHLSIQTEKVVHSNG 152
                 68999****************************************99***********************************************99732 PP

      BCS1_N  68 ssaeedededeeedgkkkkplrylPavgtthlfrykgrllavtRereekssdsetgapeetltltclgrsreilkeLleearelalkkqegktviyraa 166
                 +               ++ ++ +lP++g +h++ry+g++++v+R+re ks d++tg+p+et+tlt+l+ +++++++L+ ea++la+k+ egktviy+a+
  KKY17718.1 153 A--------------IHT-RFALLPGPG-KHILRYNGAFILVNRTREAKSRDLQTGTPWETITLTTLYGHKHVFEDLFTEAHALAEKNYEGKTVIYNAW 235
                 2..............446.*********.6*******************************************************************99 PP

      BCS1_N 167 agsggeWrrvas.RpkRplstV 187
                    ++eW+++++ R+kRpl++V
  KKY17718.1 236 ---STEWKPFGQpRRKRPLESV 254
                 ...9*****************9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   4.4e-21     4e-18       2     130 ..     290     414 ..     289     416 .. 0.86

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 4.4e-21
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH....TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr....sgseseeeervvnqLlteldgv 96 
                 llyGppGtGK+++++a+a +l+ ++  +++se        + +++++l++ + +    +i++++++da +++r    + +  + ++ + + Ll++ldgv
  KKY17718.1 290 LLYGPPGTGKSSFIQALAGHLDYDIAILNLSERG-----LTDDRLNHLLTVVPKR---TIVLLEDVDAAFSNRrqqtDADGYRGANVTFSGLLNALDGV 380
                 9********************9888888887765.....779*******987654...7**************765444455667889999******** PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEET CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkiei 130
                  + e+  i+ ++tn++++ld+al+r gR+d+ +++
  KKY17718.1 381 ASAEE-RILFLTTNHVERLDEALVRpGRVDMTVRL 414
                 **866.89999*******************98876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       6.6   5.9e+03      72     127 ..     200     272 ..     179     278 .. 0.47
   2 !   22.6   0.0   1.3e-07   0.00011      24     150 ..     284     401 ..     261     405 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 6.6
      AAA_16  72 laqalareellrqlldeaesaeleawrekleeala................avpelagaea.......srllellkrll 127
                 l+++   ++++++l +ea + ++e   e  +  ++                +  +             +r+ + +++++
  KKY17718.1 200 LTTLYGHKHVFEDLFTEAHA-LAEKNYEGKTVIYNawstewkpfgqprrkrPLES-----VvldegvkERIVADIQDFI 272
                 45555555666666666333.3333333333333345555555544333332222.....1222335566666666666 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 1.3e-07
      AAA_16  24 p..elvllsGesGvGKsslvrellralekdggif.lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaeasrl 119
                 p  +  ll+G++G+GKss +++l+ +l  d +i+ l+++        ++ +l+++  + + +  l+d +++   ++ +++  + ++        +a+  
  KKY17718.1 284 PyrRGYLLYGPPGTGKSSFIQALAGHLDYDIAILnLSERGLTD---DRLNHLLTVVPK-RTIVLLEDVDAA-FSNRRQQTDADGYR--------GANVT 369
                 344889************************4444533333333...233458888866.777777777444.55555554445455........66999 PP

      AAA_16 120 lellkrll.allsrderplvlvlDdlqwadea 150
                 +  l ++l   +s +er l l+  +++++dea
  KKY17718.1 370 FSGLLNALdGVASAEERILFLTTNHVERLDEA 401
                 99999999888888777788888888888886 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   9.2e-08   8.2e-05      56     199 ..     289     442 ..     261     463 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 9.2e-08
      DUF815  56 vLLwGarGtGKSslvkallneyaeegLrlievekedlkelpklvellrerperfilfvDDL..sFeeeeeey............ksLksvLeGsleakp 140
                  LL+G  GtGKSs ++al  ++    +++++++++ l++ ++l +ll  +p+r i+++ D+  +F ++ ++               L  +L+G    ++
  KKY17718.1 289 YLLYGPPGTGKSSFIQALAGHLD-YDIAILNLSERGLTD-DRLNHLLTVVPKRTIVLLEDVdaAFSNRRQQTdadgyrganvtfSGLLNALDGVA--SA 383
                 69***************999875.5699*********98.8999999***********9875578765443323333333333334555555543..34 PP

      DUF815 141 envliyaTsNrRhLlpeklsdneeleeeeihaseaveekls.LsdRFGlwlgFykldqee 199
                 e+ +++ T+N+ + l e l    + ++ +++ +ea+  ++s L dRF   l   +  + e
  KKY17718.1 384 EERILFLTTNHVERLDEALVRPGR-VDMTVRLGEATRYQISkLWDRFYGDLDASEKYKAE 442
                 555667788888888888877655.88889999999888887888886555555555555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     1e-05    0.0092       3      39 ..     290     327 ..     288     402 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1e-05
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--T.T--HH CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqltr.dttee 39 
                 lL GppGtgKs++++ la  l   + + +l++ ++t +
  KKY17718.1 290 LLYGPPGTGKSSFIQALAGHLDYDIAILNLSErGLTDD 327
                 9********************99988888764145555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     1e-05    0.0093      23      72 ..     276     322 ..     262     341 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1e-05
       AAA_7  23 syllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaq 72 
                 s+  +  +  ++  ll+Gp GtGK++ i+ l  +ld   y ++++n+s +
  KKY17718.1 276 SWYYDRGIPYRRGYLLYGPPGTGKSSFIQALAGHLD---YDIAILNLSER 322
                 56667777889999*********************9...88888888765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.4e-05     0.013       3      69 ..     290     360 ..     289     369 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
      AAA_21   3 vliGpNgsGKSnLLdaldllarl....drdvegltdelsggggirkipslldlydpeipfefeieeflsqg 69 
                 +l+Gp g+GKS++++al +  ++    ++ +e++ ++++ +  ++++p++     ++ +++f+ +  +++ 
  KKY17718.1 290 LLYGPPGTGKSSFIQALAGHLDYdiaiLNLSERGLTDDRLNHLLTVVPKRTIVLLEDVDAAFSNRRQQTDA 360
                 79******************999999988888888888888888888888888888888888777555555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   6.7e-05      0.06       5      31 ..     289     319 ..     286     350 .. 0.82
   2 ?    0.5   0.0      0.48   4.3e+02      86     127 ..     345     389 ..     327     427 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.7e-05
      AAA_24   5 iliyGpsgiGKTtlakel....gpkplfidt 31 
                 +l+yGp+g+GK++++  l     ++++++++
  KKY17718.1 289 YLLYGPPGTGKSSFIQALaghlDYDIAILNL 319
                 689************9997777677777665 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.48
      AAA_24  86 irqnekaeskedkgdgkGygelaeefrrllkklqelrk...nvif 127
                  + + +++++  + d+ Gy  ++  f+ ll++l+ +      + f
  KKY17718.1 345 EDVDAAFSNRRQQTDADGYRGANVTFSGLLNALDGVASaeeRILF 389
                 56667777888889999**************99887665555555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.8e-05     0.016      12      56 ..     265     309 ..     259     404 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-05
      AAA_25  12 vadlaapppprrwlvkgllpagelallaGapgtGKttlaldlala 56 
                 vad++  + + +w++++ +p     ll+G+pgtGK+ +   la +
  KKY17718.1 265 VADIQDFINSASWYYDRGIPYRRGYLLYGPPGTGKSSFIQALAGH 309
                 567888899999****999*******************9999966 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.3e-05      0.02       2      44 ..     290     331 ..     290     415 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.3e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgf.............gvnlrdvakenglllevdpe 44 
                 ll G+pG+GK+++ ++L+ +l +                            ++ ++
  KKY17718.1 290 LLYGPPGTGKSSFIQALAGHLDYdiailnlsergltD--------------DRLNH 331
                 589**************99976544444444444441..............43333 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.7e-05     0.042       2      26 ..     290     314 ..     289     370 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.7e-05
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl 26 
                   +lyGp+g+GKS++++ La +l  ++
    KKY17718.1 290 LLYGPPGTGKSSFIQALAGHLDYDI 314
                   69**************999988666 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   7.8e-05      0.07      14      51 ..     289     326 ..     282     424 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.8e-05
                 EEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllkpteGeilldgkdlke 51 
                 + + G+ G+GKS+++++lag+l+ +   ++l ++ l++
  KKY17718.1 289 YLLYGPPGTGKSSFIQALAGHLDYDIAILNLSERGLTD 326
                 6799*****************99987777777777777 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.9e-05     0.079      18      43 ..     284     307 ..     272     310 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.9e-05
      AAA_29  18 eidlkgatlltGpsGsGKSTllDAiq 43 
                 + + +g +ll Gp G+GKS+++ A++
  KKY17718.1 284 PYR-RG-YLLYGPPGTGKSSFIQALA 307
                 444.66.9**************9975 PP

>> PPV_E1_C  Papillomavirus helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.7e-05      0.06     255     287 ..     279     311 ..     264     321 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.7e-05
    PPV_E1_C 255 fLkgvPkknclvllGppntGkslfamslikfLk 287
                 + +g+P +   +l+Gpp tGks f ++l   L+
  KKY17718.1 279 YDRGIPYRRGYLLYGPPGTGKSSFIQALAGHLD 311
                 5589*********************99987665 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00016      0.14      13      36 ..     280     303 ..     256     308 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
      ATPase  13 kgGipegrvvlitGepGtGKtifa 36 
                 ++Gip +r +l++G pGtGK+ f 
  KKY17718.1 280 DRGIPYRRGYLLYGPPGTGKSSFI 303
                 48*******************885 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00027      0.25       8      31 ..     289     312 ..     284     357 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00027
      AAA_22   8 lvvtGesGtGKTtllrrlleqlde 31 
                  +++G++GtGK+  ++ l+  ld 
  KKY17718.1 289 YLLYGPPGTGKSSFIQALAGHLDY 312
                 689**************9988854 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00025      0.23       3      25 ..     290     314 ..     289     407 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00025
      AAA_33   3 llvGlpGsGKstlaerllkklg..a 25 
                 ll G+pG+GKs +++ l+ +l+   
  KKY17718.1 290 LLYGPPGTGKSSFIQALAGHLDydI 314
                 578***************9988542 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00044       0.4       3      24 ..     290     312 ..     289     364 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00044
      AAA_28   3 vitGgestGKTtlleaLaar.gy 24 
                  + G+++tGK++ ++aLa + +y
  KKY17718.1 290 LLYGPPGTGKSSFIQALAGHlDY 312
                 589***************88644 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00036      0.32       4      22 ..     291     309 ..     289     403 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00036
                 EEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   4 ivGrpNvGKStLinaltge 22 
                 ++G p +GKS++i+al g 
  KKY17718.1 291 LYGPPGTGKSSFIQALAGH 309
                 79**************995 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00037      0.33      20      41 ..     289     310 ..     274     360 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00037
      AAA_11  20 tliqGPPGtgKTktivellsql 41 
                  l+ GPPGtgK+++i +l  +l
  KKY17718.1 289 YLLYGPPGTGKSSFIQALAGHL 310
                 5899***********9999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.50
# Mc/sec: 3182.99
//
Query:       KKY17719.1  [L=864]
Description: putative extracellular serine-threonine rich protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-05   24.1   3.3    2.9e-05   24.1   3.3    3.0  2  CFEM        CFEM domain
  ------ inclusion threshold ------
       0.19   11.2   4.0        7.7    5.9   0.2    2.7  2  Headcase    Headcase protein


Domain annotation for each model (and alignments):
>> CFEM  CFEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.2       1.5   1.3e+04      26      33 ..     524     532 ..     514     541 .. 0.57
   2 !   24.1   3.3   3.2e-09   2.9e-05       6      66 .]     583     645 ..     579     645 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.5
                 T-HHHH.HH CS
        CFEM  26 ddtaCi.Ct 33 
                 + taC+ Ct
  KKY17719.1 524 TSTACHkCT 532
                 344444333 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 3.2e-09
                 -GGGTCGGG---TTSS..S-.TT-HHHHHH-HHHHHHHHHHHHHH--.THHHHHHHHHHHHHHH CS
        CFEM   6 PkCaqdClaeavkkss.gCa.kddtaCiCtnaklqseitdCvtaaCt.aeealaavnaasslCa 66 
                 P+ + +Cl++ +++    C  ++d++C+C ++++++ + +Cv+a+   +ee ++a+++++ +Ca
  KKY17719.1 583 PEVLPSCLNTWLDS-LpDCTsNSDVSCFCPSSNFTNLVYSCVEAHGAdTEEIQSALSYFAGICA 645
                 788889****9975.4479999*********************9988688889**********6 PP

>> Headcase  Headcase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.2   0.00086       7.7     143     190 ..     351     395 ..     331     401 .. 0.85
   2 ?    5.4   0.5    0.0013        11     148     190 ..     492     534 ..     472     540 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.00086
    Headcase 143 ydifaavpCCeerlkCkkCkkllldaekrlkffseysrsvaCphCsak 190
                 y+   ++  C+  l+ ++ + ++++ + ++++f+  s+s+ C +C+a+
  KKY17719.1 351 YE---TTSVCPVTLTSTSGSSTIIQETSTTSTFTVTSTSTVCTKCTAT 395
                 43...56789999********************************976 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0013
    Headcase 148 avpCCeerlkCkkCkkllldaekrlkffseysrsvaCphCsak 190
                 ++  C+  l+ ++ + ++++++ ++++f+  s+s+aC +C+++
  KKY17719.1 492 TTSVCPLTLTSTSGSSTFVQTTSTISTFTVTSTSTACHKCTET 534
                 567899999*******************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1348  (0.0751855); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.46u 0.37s 00:00:01.83 Elapsed: 00:00:00.56
# Mc/sec: 4628.55
//
Query:       KKY17720.1  [L=451]
Description: putative zn-dependent hydrolase oxidoreductase family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-27   95.3   0.0    4.4e-17   62.3   0.0    2.6  2  Lactamase_B_2  Beta-lactamase superfamily domain
    1.7e-09   37.8   0.0    2.9e-09   37.0   0.0    1.4  1  Lactamase_B_3  Beta-lactamase superfamily domain
  ------ inclusion threshold ------
        0.1   12.6   4.3          1    9.3   2.6    2.8  2  Lactamase_B    Metallo-beta-lactamase superfamily


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   7.3e-21   4.4e-17       2     145 ..     114     291 ..     113     298 .. 0.79
   2 !   30.0   0.0   5.4e-11   3.3e-07     149     201 .]     329     380 ..     320     380 .. 0.94

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 7.3e-21
                    EEEES--TT.......HHHHHTCGGS--S.SS--..SEEEEE-SS--HHHH..GGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEE CS
  Lactamase_B_2   2 riLiDagpd.......lrqqalralqPve.lrdelppidaVllthaHyDHl..aglltlrelrpkklplyapkgvlavleanfvylaleeepavnv 87 
                    r+L+D++++       ++++ +r+  P++   +++p idaV+++h+HyDHl      ++++ +p ++++++p+g  +   ++++         +nv
     KKY17720.1 114 RVLFDPVFEdrcspisFLGP-KRYT-PKPcDISDIPFIDAVVISHNHYDHLsyPTTQDIKKHHP-NAHFFVPLGNKKWFLDSGI---------TNV 197
                    8*******************.9997.77778********************4444455555555.5899999999887777754.........455 PP

                    EEE-TTSEEEE..............................CSTTEEEEEEEE-EE--C.TCCE-TTTSEEEEEE.....CTTEEEEEESS-S- CS
  Lactamase_B_2  88 heldwgesfel..............................gdggleitatparhksgr.rldrnagdtlGlrie.....gggkrvyyigDtgy 145
                    +eldw+++++l                               +   +i + p +h+s+r  +drn+++++++ +      ++  ++y++gDtgy
     KKY17720.1 198 TELDWWDETDLtlspspssspsekrssitsststtpshsspSNITARISCLPSQHFSARsLFDRNNTLWASWSVCsgppsSQPSSIYFAGDTGY 291
                    555555555555555555555555555566666666*9999667789***************************98777666777*******98 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 5.4e-11
                    HHHHHHCT-SEEEEE-S-SSTTHHHHHHT---STSHHHHCTTSSSSEEEEESB CS
  Lactamase_B_2 149 eigerlggadllllditayeddemirhmgHltpeeaveaaadlgakrlvliHi 201
                    +ig + g++dl l++i+ay+++e + +++H++p++av+++ d++ +r+v +H+
     KKY17720.1 329 KIGSLRGPFDLGLIPIGAYSPRELM-SPIHCNPQDAVRIFLDTRCRRAVGMHW 380
                    68888899*****************.8*************************9 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   4.9e-13   2.9e-09       3      59 ..      98     174 ..      96     226 .. 0.76

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 4.9e-13
  Lactamase_B_3   3 twlghnsfllet.agarilvDPf..........kanlgyeppa..............eeaDlvlisqaledHahletlkql...a 59 
                    twlgh++f +e  +g r+l DP+                                  + +D+v+is+++ dH   +t + +    
     KKY17720.1  98 TWLGHACFYVEFpGGLRVLFDPVfedrcspisfL--------GpkrytpkpcdisdiPFIDAVVISHNHYDHLSYPTTQDIkkhH 174
                    9***********457********66666555542........033444556999999****************999998875552 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.6   0.00017         1      45      58 ..     149     162 ..      97     164 .. 0.83
   2 ?    1.0   0.0     0.059   3.5e+02     144     169 ..     282     309 ..     276     327 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00017
                  EEEEE-SBSSHHHH CS
  Lactamase_B  45 vdavilTHlHlDHi 58 
                  +dav+++H H+DH 
   KKY17720.1 149 IDAVVISHNHYDHL 162
                  8************7 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.059
                  CEEEECTTTSSHHCCCCCC...TTCEEE CS
  Lactamase_B 144 kvlftGDallagetgridl..tlrgaev 169
                  ++ f+GD++++  ++  d+  ++  + +
   KKY17720.1 282 SIYFAGDTGYRSVIPPSDPklPPETSST 309
                  578*******999999999554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.50
# Mc/sec: 2708.35
//
Query:       KKY17721.1  [L=327]
Description: putative zf-parp-type zinc finger protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-19   68.1   0.5    4.1e-18   66.0   0.5    2.2  1  zf-PARP    Poly(ADP-ribose) polymerase and DNA-Ligase Zn-fing


Domain annotation for each model (and alignments):
>> zf-PARP  Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.5   2.3e-22   4.1e-18       1      81 [.       7      93 ..       7      94 .. 0.94

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 2.3e-22
                EE-S-S--B-SS..S-...-B--SSSEEEEE-...------EEEEHHHHHTSSS--S-GGG........EETTTTS-HHHHHHHHHH CS
     zf-PARP  1 EyAksgrakCkk..Ck...kkIakgelRlgkkveieeseskrWyHvgCftekqiknkketkeieee.eeiegfeeLekedqekvrda 81
                E+Aks+r+ C +  Ck    +I+kg+lR+g  v+i++++s+rW+H++C+t+ q  + ++  e     + ++g++e ++  +e+++++
  KKY17721.1  7 ELAKSKRSICTNkgCKdarINIDKGDLRFGVLVTINDHDSWRWKHWNCVTPDQWGHINKYLEEAGGiDYLDGYDEVDDLSRERIQKC 93
                89********9999**9999*********************************99999998765559*****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1721  (0.0959897); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.96u 0.33s 00:00:01.29 Elapsed: 00:00:00.52
# Mc/sec: 1900.02
//
Query:       KKY17722.1  [L=433]
Description: hypothetical protein UCRPC4_g05355 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.50
# Mc/sec: 2619.16
//
Query:       KKY17723.1  [L=294]
Description: putative pre-rna splicing factor srp2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-21   73.9   0.1    9.5e-10   38.2   0.0    2.4  2  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
  ------ inclusion threshold ------
      0.051   13.4   0.0         12    5.8   0.0    2.2  2  RRM_occluded  Occluded RNA-recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   3.1e-12   2.8e-08      10      69 ..       7      61 ..       5      62 .. 0.93
   2 !   38.2   0.0   1.1e-13   9.5e-10       3      69 ..      96     159 ..      95     160 .. 0.85

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 3.1e-12
                SSHHHHHHHHHT..TSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1 10 vteeeLkelFsk..fGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69
                +t++e++++F+    G+i++ikl++       gf+f+e+e++ dA++ + a++g+++++ +l
  KKY17723.1  7 ATKQEVEDHFNThgTGKITEIKLMN-------GFGFIEYEDHLDARDVVPACHGTNFKNERL 61
                79*********966789********.......9*************************9987 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 1.1e-13
                 EESETTTSSHHHHHHHHHT.TSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   3 VgnLppdvteeeLkelFsk.fGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +++Lp d+++++Lk++ ++   +++  +  rd     +g +fVeFe+ +d ++A+e+l+gk+++g ++
  KKY17723.1  96 ITGLPVDTSWQDLKDFARQsQLDVVYSETGRD----RDGRGFVEFETADDLRSAVEKLDGKEFKGAVV 159
                 789************99885555555555554....99**************************9877 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0014        12       9      69 ..       3      62 ..       1      65 [. 0.88
   2 ?    5.6   0.0    0.0016        14      42      71 ..     133     162 ..     109     166 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0014
  RRM_occluded  9 lsDtvnkariralveek.egeikkivLvpdheGAivefkdekiagkasLaLdgsefegkklr 69
                  + D  +k++++++++++ +g+i++i L+   +  ++e++d+ +a  ++ a +g++f++++l 
    KKY17723.1  3 VVDYATKQEVEDHFNTHgTGKITEIKLMNGFG--FIEYEDHLDARDVVPACHGTNFKNERLT 62
                  66888999*********88********97665..9**********99999999999999886 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0016
  RRM_occluded  42 ivefkdekiagkasLaLdgsefegkklrcG 71 
                   +vef+ + +   a+ +Ldg+ef+g +++c 
    KKY17723.1 133 FVEFETADDLRSAVEKLDGKEFKGAVVHCV 162
                   6888888888899999************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 1938.90
//
Query:       KKY17724.1  [L=767]
Description: putative conserved proline-rich protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.51
# Mc/sec: 4566.18
//
Query:       KKY17725.1  [L=566]
Description: putative alcohol oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-54  185.2   0.0    2.3e-54  184.8   0.0    1.2  1  GMC_oxred_N  GMC oxidoreductase
    1.6e-35  122.7   0.2    3.3e-34  118.5   0.2    2.3  1  GMC_oxred_C  GMC oxidoreductase


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.8   0.0   2.6e-58   2.3e-54      90     295 ..       1     210 [.       1     211 [. 0.96

  Alignments for each domain:
  == domain 1  score: 184.8 bits;  conditional E-value: 2.6e-58
  GMC_oxred_N  90 ayiRtpaadldeWeeeaglegwssdevlpafkkvetaqale..sdlhgvdgrlgvtekgkeesplnkallkaaeelGlpvprdlngk..hqcGvcllg 183
                  +y+R++a+d+d+W+++    gw+++e+ p++kk et+q+ +   d+hg++g+++v + g++++p ++++l+aae++G+pv++dl++    + + ++l+
   KKY17725.1   1 MYTRASASDYDDWQAK----GWKTEELVPLMKKHETYQRSClnPDIHGFEGPIKV-SFGNYTYPVMQDFLRAAESQGFPVTDDLQDLktGHGAEHWLK 93 
                  8***************....9*******************9999***********.*****************************987567889**** PP

  GMC_oxred_N 184 v.tcrtgarqstarawLrpal.erpnleiltgakaekiilegrkkravGVeasdkkgt....vkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLk 275
                  + +++tg+r+++a+a+++ +  +  nl++  ++ka+kii++  ++ravGV++  +k        ++++a+k+++v++G+l+sP +LqrSG+G+ e+Lk
   KKY17725.1  94 WiNRDTGRRSDAAHAYVHATRaKYTNLHLKCNTKADKIIIK--DGRAVGVQCVPTKPVggkvEPTIFTARKQIIVSGGTLSSPLILQRSGIGDPEKLK 189
                  ********************95668****************..***********999988888999******************************** PP

  GMC_oxred_N 276 evgvdvvvdlp.vGknLqdHp 295
                  +vgv+++vdlp vG n+qdH+
   KKY17725.1 190 KVGVEPIVDLPgVGLNFQDHY 210
                  ********************7 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.5   0.2   3.7e-38   3.3e-34       1     143 [.     328     531 ..     328     532 .. 0.93

  Alignments for each domain:
  == domain 1  score: 118.5 bits;  conditional E-value: 3.7e-38
                  ----EEEEESTT-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGG................................................ CS
  GMC_oxred_C   1 PesrGrvtlsssdptgaplidpnylsdprdlaalvealkaarkilaaaal................................................ 50 
                  P+srG+ +++s+dp++ap++d ++++d+rd+a +v+++ + r++++++++                                                
   KKY17725.1 328 PFSRGFTHITSPDPYDAPDFDAGFMNDKRDMAPMVWGYIQSRETARRMSAyagevtsmhphfsfdsparardmdlmttnayagsnhitagiqhgswas 425
                  89**********************************************667777788888889999999999999999**************999999 PP

                  ........TTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B-STCGC.....BSB-TTSBBTT-CSEEE-SGGGSSS--SS-THH CS
  GMC_oxred_C  51 ........dvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMGadpkd.....sVVDsdlrvhgvdnLrVvDaSvfPsapganptl 135
                          +++  + +  ++ e+ + ++e+ + +ek v+++++t++H lGtc+M++++ +     +V+D++l+vhgv++L+V+D S++P+++g+n+ +
   KKY17725.1 426 pvdsgkppKLNLLNSNQHNFREPLEYTKEDIAHIEKWVQRHCETTWHSLGTCSMAPREGNsivkhGVLDERLNVHGVKGLKVADLSICPDNVGCNTFS 523
                  99999888778888888888888888888888**************************9999999********************************* PP

                  HHHHHHHH CS
  GMC_oxred_C 136 tilalAek 143
                  t+l+++ek
   KKY17725.1 524 TALLIGEK 531
                  *******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3745.46
//
Query:       KKY17726.1  [L=1072]
Description: putative abc transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-45  153.0   0.0    3.4e-23   82.7   0.0    3.4  3  ABC_tran         ABC transporter
    9.1e-10   38.3   5.0      8e-05   22.2   0.3    4.2  2  SMC_N            RecF/RecN/SMC N terminal domain
    1.1e-08   35.1   6.2    1.1e-08   35.1   6.2    3.9  4  ABC_membrane     ABC transporter transmembrane region
    5.2e-06   27.0   0.2      0.013   15.8   0.0    3.0  2  AAA_16           AAA ATPase domain
    6.9e-06   25.3   1.3       0.01   14.9   0.1    2.4  2  T2SSE            Type II/IV secretion system protein
    0.00028   21.4   0.3       0.75   10.3   0.1    2.5  2  AAA_18           AAA domain
    0.00036   20.8   0.8       0.46   10.7   0.4    2.8  2  AAA_22           AAA domain
    0.00039   20.3   1.1          3    7.6   0.0    4.0  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    0.00073   19.5   0.9       0.63    9.9   0.0    2.7  2  RsgA_GTPase      RsgA GTPase
     0.0013   18.4   5.6       0.32   10.8   0.2    3.0  2  AAA_29           P-loop containing region of AAA domain
     0.0026   17.8   0.3       0.64   10.1   0.0    2.8  2  MMR_HSR1         50S ribosome-binding GTPase
     0.0027   17.5   0.3         13    5.5   0.0    3.3  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0032   17.2   0.4        1.3    8.7   0.0    3.3  3  AAA_24           AAA domain
     0.0037   17.7   0.2      0.067   13.6   0.1    2.9  3  AAA              ATPase family associated with various cellul
     0.0037   17.5   1.9       0.65   10.3   0.0    3.7  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
     0.0044   17.0   0.8       0.04   13.9   0.2    2.3  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0085   15.3   0.3       0.04   13.1   0.1    2.1  2  PIF1             PIF1-like helicase
     0.0086   15.6   0.9        2.1    7.8   0.2    2.5  2  AAA_7            P-loop containing dynein motor region
     0.0099   15.8   0.3        2.6    8.0   0.2    2.6  2  NACHT            NACHT domain
  ------ inclusion threshold ------
      0.014   14.6   2.4        1.3    8.2   0.1    2.9  3  NB-ARC           NB-ARC domain
      0.015   14.2   0.0        3.2    6.6   0.1    2.4  2  AFG1_ATPase      AFG1-like ATPase
      0.017   15.0   1.9       0.83    9.5   0.7    2.6  2  NTPase_1         NTPase
       0.02   14.6   0.6        1.3    8.7   0.8    2.7  2  AAA_30           AAA domain
      0.034   14.2   0.5        8.2    6.4   0.0    2.5  2  Dynamin_N        Dynamin family
      0.034   14.0   0.0        7.5    6.4   0.0    2.4  2  ATPase_2         ATPase domain predominantly from Archaea
      0.038   14.2   0.4       0.89    9.7   0.0    2.6  2  AAA_33           AAA domain
      0.041   13.5   0.6        3.5    7.2   0.0    2.5  2  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
      0.042   13.5   4.7        1.2    8.7   0.8    2.7  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.055   13.6   2.8       0.33   11.0   0.1    2.4  2  DUF87            Helicase HerA, central domain
       0.08   13.3   0.4         25    5.3   0.0    3.3  2  RNA_helicase     RNA helicase
      0.083   11.8   1.2        8.2    5.2   0.0    2.4  2  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
      0.096   12.0   1.0          6    6.1   0.2    2.5  2  FtsK_SpoIIIE     FtsK/SpoIIIE family
       0.14   11.3   0.1        9.6    5.3   0.0    2.3  2  DUF815           Protein of unknown function (DUF815)
       0.14   11.4   0.2        4.5    6.5   0.1    2.3  2  Zeta_toxin       Zeta toxin
       0.15   11.3   0.2          5    6.3   0.2    2.3  2  DUF2075          Uncharacterized conserved protein (DUF2075)
       0.36   11.3   6.9        1.7    9.1   0.1    2.4  2  AAA_23           AAA domain
       0.93    9.8   4.9        2.7    8.3   0.9    3.2  3  AAA_19           AAA domain
        1.5    7.7   6.1        5.7    5.8   0.3    2.6  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       5.3   2.5e+03     101     126 ..      69      94 ..      49      98 .. 0.78
   2 !   66.0   0.0     1e-20   4.8e-18       1     134 [.     268     403 ..     268     406 .. 0.83
   3 !   82.7   0.0   7.2e-26   3.4e-23       1     137 []     796    1001 ..     796    1001 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 5.3
                 GESTTSGGS-HHHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 101 vvksspssLSgGqkqrvalarallkk 126
                 +++ +++  S   +qr+++ +a+l  
  KKY17726.1  69 NITAKQKAWSMATQQRISITKAILDS 94 
                 4456668899999******9999865 PP

  == domain 2  score: 66.0 bits;  conditional E-value: 1e-20
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................esd 82 
                 l++++ +   g +v + G  G+GK+tL+k+++g l  ++G+i+++            +k+ig+++q p l +++ v++                   + 
  KKY17726.1 268 LNDITTTAATGGLVFVSGTVGTGKTTLVKAILGDLPLDSGTITIR------------SKRIGYCSQMPWLMNGT-VKQIicgpqegvideqwygrvVYA 353
                 7899999***********************************555............66677777776666666.666566666665444444444666 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDE 134
                  ++e+ l+++ + +   tvv+s++ +LSgGq+qr+alara++ + +ll+lD+
  KKY17726.1 354 CDLEEDLEQMPNGD--GTVVGSRGITLSGGQRQRLALARAIFARMDLLILDD 403
                 66999999999888..***********************************8 PP

  == domain 3  score: 82.7 bits;  conditional E-value: 7.2e-26
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxx RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsk 91  
                  lkn++l++++g+kv+i G++G+GKS+Ll  +++l + ++G+i +d+ d++++ + ++r++i ++pq+p l  + t+ren        d++i ++l+k
  KKY17726.1  796 LKNITLSISPGQKVGICGRTGSGKSSLLLSILRLIEIESGSIYIDDVDISTILRDIVRSRIITVPQDPMLVMTDTIRENldptgtIPDKKIIDVLKK 892 
                  79***********************************************************************************666666666666 PP

                  STTGG........................................................TTCBGESTTS...GGS-HHHHHHHHHHHHHHHTS.. CS
                  xxxxx........................................................xxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx.. RF
    ABC_tran   92 lglke........................................................lkdtvvkssp...ssLSgGqkqrvalarallkkp.. 127 
                  ++l                                                             ++++s p   + LS Gq+q  ++ara+l +   
  KKY17726.1  893 VKLWTviqsrgtsaqaaaaesdaidtamgaagiststpspgsgtstspttttttdpkpsstSSSNPLSS-PmktYPLSRGQQQLFSIARAILMREyp 988 
                  6666666666666666666666666777777777799**************999998888733333333.246699**************9965433 PP

                  ...SEEEEESTTT CS
                  ...xxxxxxxxxx RF
    ABC_tran  128 ...kllllDEpta 137 
                     k++llDE+t+
  KKY17726.1  989 trgKIVLLDEATS 1001
                  3349*******96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00062      0.29     135     181 ..     122     418 ..      60     430 .. 0.66
   2 !   22.2   0.3   1.7e-07     8e-05      18     210 ..     799    1042 ..     792    1049 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00062
                 T.................................................................................................. CS
                 x.................................................................................................. RF
       SMC_N 135 e.................................................................................................. 135
                                                                                                                    
  KKY17726.1 122 Gdafrwlivafnltanvlaifapvitlviyaiqaklrgsqsldtntaftsiaiismvtgpanmilvlvpqfaaclaaldriqkyllspsredgrletkd 220
                 255555555555555555555555555555666666666666666666666666666666666666666666666666666666666666666666666 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  KKY17726.1 221 spagqngqrhivenghaqdspkviaaspnavdidratirpastaepvlnditttaatgglvfvsgtvgtgkttlvkailgdlpldsgtitirskrigyc 319
                 666666666666666666666666666666666677777777777777777777777777777777777777777777777777777777777777777 PP

                 .........................................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHH CS
                 .........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 .........................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvk 177
                                                                          +LSgG+++ +ala       + +  l +lD++ +aLD+k  +
  KKY17726.1 320 sqmpwlmngtvkqiicgpqegvideqwygrvvyacdleedleqmpngdgtvvgsrgiTLSGGQRQRLALA----RAIFARMDLLILDDVLSALDAKTER 414
                 7777777777777777777777777788888888888888888888888888888889******966554....344667889***********98776 PP

                 HHHH CS
                 xxxx RF
       SMC_N 178 kvae 181
                  + +
  KKY17726.1 415 HIID 418
                 6654 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 1.7e-07
                  EEEETTSSEEE.EEESTTSSHHHHHHHHHHHCTT.T..........TTTTTCHCCCCCC--BTTCSSTTEEEEEEEE....EETTEESSSSSSCEEE CS
                  xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx RF
       SMC_N   18 vilpfsksfta.ivGpNGSGKsnlldAilFvLGers..........akklrseklsdlihkskekasvkkaeveitf....dnedkklkiekeevsi 99  
                  ++l +s++ ++ i G+ GSGKs+ll +il ++  +s          ++ lr    s++i+  ++   v+  ++   +    + +dkk+    ++v++
  KKY17726.1  799 ITLSISPGQKVgICGRTGSGKSSLLLSILRLIEIESgsiyiddvdiSTILRDIVRSRIITVPQDPMLVMTDTIRENLdptgTIPDKKIIDVLKKVKL 895 
                  5556666554338999999999999999877766551111111111334555555555555555566666666666622222233333333344444 PP

                  EEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT......................................CS-HHHHHHHHHHHHHHHHCCS. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................xxxxxxxxxxxxxxxxxxxxxx. RF
       SMC_N  100 srrvkrkgeseykingkevtkkevsellesagiske......................................lLSgGektLvalaLlfAiqkvk. 157 
                   + +++ g+     +   +++  +   +  agis +                                       LS+G+++L ++a  + ++++  
  KKY17726.1  896 WTVIQSRGT---SAQAAAAESDAIDTAMGAAGISTStpspgsgtstspttttttdpkpsstsssnplsspmktyPLSRGQQQLFSIARAILMREYPt 989 
                  444444444...3455667778899999999999999999******************************99999***********98888888751 PP

                  --SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  158 paplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvg 210 
                  +  ++llDe  ++ D +  +++ ++++e+     ++ +++r e++ +ad+++ 
  KKY17726.1  990 RGKIVLLDEATSNVDGETDQQIQKVIREEFLGYTIVTVAHRLETIMDADEILV 1042
                  5579********************************************99875 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.4      0.26   1.2e+02     100     141 ..      27      68 ..      22      72 .. 0.85
   2 ?    4.7   4.2     0.042        20     158     273 ..      63     181 ..      55     182 .. 0.86
   3 ?   -0.6   1.2       1.7   8.2e+02      13      64 ..     523     567 ..     512     572 .. 0.63
   4 !   35.1   6.2   2.2e-11   1.1e-08     104     264 ..     571     719 ..     566     732 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.26
                   HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSH CS
  ABC_membrane 100 llsrltndvsklrdglgeklglffqslltfvgglivmfylgw 141
                    +++++ndv+ ++ +  +++ l+ q l++++++   + y+  
    KKY17726.1  27 AVTLISNDVDFISFLSDFFHELWAQCLQLVLVTSQASKYVTA 68 
                   5899***************************98777766665 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.042
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 158 saviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfekale...eakkagikkaianglligitqllgllsyalalwfGttlvi 251
                   s++++  ++  +k  + a+ ++ s++  +l  ++ +k +g  +++++k    ++   e+  a ++ ++a +l+  ++ +++ +++++++ + + l  
    KKY17726.1  63 SKYVTANITAKQKAWSMATQQRISITKAILDSMKNIKMMGLGSQMERKVRSVRKheiEMGDAFRWLIVAFNLTANVLAIFAPVITLVIYAIQAKLRG 159
                   567777778888888889999*************************99876555111777889********************************** PP

                   TTSSTHHHHHHHHHHHHHHHHH CS
  ABC_membrane 252 sgelsvgdlvvflslfailfga 273
                   s+ l+ +++++ ++++++++g+
    KKY17726.1 160 SQSLDTNTAFTSIAIISMVTGP 181
                   ********99999999988876 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.7
                   HHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  13 vlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyl 64 
                   +l+ +f  + +++l++ ++    +        +++++++++ +i+a+l++y 
    KKY17726.1 523 ALYSFFLAFAQYWLKWWTEAEGKHP-------WYYTSVYFILSIAAFLSFYG 567
                   5666666777777777777533333.......67777777777777777664 PP

  == domain 4  score: 35.1 bits;  conditional E-value: 2.2e-11
                   HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHH CS
  ABC_membrane 104 ltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgree 200
                   ++ d++ ++  l+  l+++  +++ ++++++++f ++ ++t+ l +++++++ +++++ +++++l+  + ++++         l+g  t++afg+e+
    KKY17726.1 571 FSQDMQMIDRRLPIALLQVGNNVFKLLAACVLLFSVQRYMTITLPFTAVIVYAIQKLYLHTSRQLRFMDLESRS--------LLEGASTIRAFGWEQ 659
                   899***********************************************************************........99************* PP

                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHH CS
  ABC_membrane 201 yflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvfl 264
                    f+   +k+++  +   +    ++++l+ +++ll++++ +++  +G +  ++g+ s g++   +
    KKY17726.1 660 SFIADNKKKVNISQVPFYLLMCIQRWLNLVLDLLISVLAVMV--VGLAVGLKGTTSGGQV--GI 719
                   *********************************987666555..5655555566665553..22 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.8e-05     0.013      20      59 ..     276     314 ..     266     343 .. 0.78
   2 ?    7.5   0.0      0.01       4.8      29      83 ..     811     857 ..     795     999 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.8e-05
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekd.ggiflrgk 59 
                 +  +++lv++sG  G+GK++lv+++l  l  d g i++r k
  KKY17726.1 276 A--TGGLVFVSGTVGTGKTTLVKAILGDLPLDsGTITIRSK 314
                 3..3489*****************99877776335555555 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.01
      AAA_16  29 lsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellr 83 
                 + G  G+GKssl+ ++lr +e +    ++ + ++       s++++ + r + + 
  KKY17726.1 811 ICGRTGSGKSSLLLSILRLIEIE-SGSIYIDDVDI------STILRDIVR-SRII 857
                 6799*************988877.44455555555......445555534.4444 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   2.2e-05      0.01     112     157 ..     262     306 ..     236     312 .. 0.72
   2 !    8.8   0.1    0.0015      0.73     102     159 ..     779     836 ..     772     858 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.2e-05
       T2SSE 112 ealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksd 157
                  + ++ ++++  +a ++ gl+ vsG+ g+GKttl+ a+l  ++ ++
  KKY17726.1 262 STAEPVLNDITTTA-ATGGLVFVSGTVGTGKTTLVKAILGDLPLDS 306
                 44444455555555.8899********************9998764 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0015
       T2SSE 102 eltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksder 159
                 +++++dl+a  +++    + +  +++  + + + G TgsGK+ ll ++l  i+ ++  
  KKY17726.1 779 SIEFRDLSAGYSTSTLALKNITLSISPGQKVGICGRTGSGKSSLLLSILRLIEIESGS 836
                 67788888888888888999999999999999*****************999877544 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1    0.0016      0.75       1      18 [.     281     298 ..     281     327 .. 0.89
   2 !    8.7   0.0    0.0053       2.5       1      45 [.     809     867 ..     809     904 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0016
      AAA_18   1 IlltGtpGvGKttlakeL 18 
                 ++++Gt G+GKttl k++
  KKY17726.1 281 VFVSGTVGTGKTTLVKAI 298
                 79************9987 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0053
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf............gvnlrdvakenglllevdpe..a 45 
                 ++++G  G+GK++l   + ++ ++            +++lrd+++ + +  ++dp   +
  KKY17726.1 809 VGICGRTGSGKSSLLLSILRLIEIesgsiyiddvdiSTILRDIVRSRIITVPQDPMlvM 867
                 78************99998886778899999******************9999998662 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.4   0.00098      0.46       4      29 ..     277     302 ..     274     319 .. 0.84
   2 ?    7.0   0.0     0.014       6.6      10      31 ..     811     832 ..     806     860 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00098
      AAA_22   4 tagilvvtGesGtGKTtllrrlleql 29 
                 t g+++v G +GtGKTtl++ +l  l
  KKY17726.1 277 TGGLVFVSGTVGTGKTTLVKAILGDL 302
                 67899***************988766 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.014
      AAA_22  10 vtGesGtGKTtllrrlleqlde 31 
                 ++G +G+GK+ ll  +l+  ++
  KKY17726.1 811 ICGRTGSGKSSLLLSILRLIEI 832
                 8***********9998887655 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2      0.23   1.1e+02       6      20 ..     285     299 ..     280     320 .. 0.73
   2 ?    4.8   0.0     0.045        21     220     280 ..     359     418 ..     336     425 .. 0.85
   3 !    7.6   0.0    0.0063         3       3      34 ..     810     841 ..     809     865 .. 0.71
   4 ?   -0.2   0.0       1.4   6.8e+02     237     265 ..     968     998 ..     958    1004 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.23
      AAA_21   6 GpNgsGKSnLLdald 20 
                 G  g+GK++L +a+ 
  KKY17726.1 285 GTVGTGKTTLVKAIL 299
                 6779**********3 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.045
      AAA_21 220 gvvflengdgqelparel..SdGtkrllalltallralkkgsllliDEpEngLHPkllrrlle 280
                 ++ ++ ngdg  + +r +  S G+++ lal+ a++++    +ll++D++ + L+ k  r++++
  KKY17726.1 359 DLEQMPNGDGTVVGSRGItlSGGQRQRLALARAIFARM---DLLILDDVLSALDAKTERHIID 418
                 77889999999999999999****************99...9*************99999984 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0063
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltd 34 
                 ++ G+ gsGKS+LL  +  l  + + ++   d
  KKY17726.1 810 GICGRTGSGKSSLLLSILRLIEIESGSIYIDD 841
                 689***********999988655444333333 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 1.4
      AAA_21 237 lSdGtkrllalltallralkkg..sllliDE 265
                 lS G+++l+ ++ a+l +  ++  +++l+DE
  KKY17726.1 968 LSRGQQQLFSIARAILMREYPTrgKIVLLDE 998
                 799******777777777776677******9 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0013      0.63      91     135 ..     269     314 ..     242     317 .. 0.78
   2 ?    7.1   0.2      0.01       4.7      97     126 ..     803     833 ..     785     841 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0013
                  HHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S------- CS
  RsgA_GTPase  91 eelkellkd.ktsvlvGqSGvGKStLinallpelelktgevseklg 135
                  +++++  +   ++++ G  G GK+tL++a+l++l l  g +  +++
   KKY17726.1 269 NDITTTAATgGLVFVSGTVGTGKTTLVKAILGDLPLDSGTITIRSK 314
                  5555555543788899****************99988888876655 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.01
                  CTT.SEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  97 lkd.ktsvlvGqSGvGKStLinallpelelk 126
                  ++  + + ++G +G GKS+L+ ++l   e++
   KKY17726.1 803 ISPgQKVGICGRTGSGKSSLLLSILRLIEIE 833
                  444477789***********98887666555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   1.2    0.0041       1.9      20      42 ..     276     298 ..     268     300 .. 0.81
   2 !   10.8   0.2   0.00067      0.32      16      40 ..     800     824 ..     795     831 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0041
      AAA_29  20 dlkgatlltGpsGsGKSTllDAi 42 
                  + g ++++G+ G+GK+Tl+ Ai
  KKY17726.1 276 ATGGLVFVSGTVGTGKTTLVKAI 298
                 4456899*************987 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00067
      AAA_29  16 tieidlkgatlltGpsGsGKSTllD 40 
                 t++i++ + + + G++GsGKS+ll 
  KKY17726.1 800 TLSISPGQKVGICGRTGSGKSSLLL 824
                 56777777889************95 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.064        30       2      22 ..     281     301 ..     280     319 .. 0.83
   2 !   10.1   0.0    0.0014      0.64       1      21 [.     808     828 ..     808     871 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.064
                 EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge 22 
                 v + G   +GK+tL++a++g+
  KKY17726.1 281 VFVSGTVGTGKTTLVKAILGD 301
                 668899************986 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0014
                 EEEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg 21 
                 +v+i Gr+ +GKS+L+ ++++
  KKY17726.1 808 KVGICGRTGSGKSSLLLSILR 828
                 69**************99986 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.027        13       2      52 ..     282     332 ..     281     346 .. 0.72
   2 ?    3.0   0.0      0.15        69       5      21 ..     813     829 ..     811     842 .. 0.85
   3 ?    4.9   0.0      0.04        19       7      79 ..     932    1007 ..     931    1018 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.027
  Viral_helicase1   2 vvhGvpGcGKStlirkllrtsliltvnrptaelltegk...pklpnlsvrtvds 52 
                       v+G  G GK+tl++ +l +   l  ++ t+ +++++    ++ p l + tv++
       KKY17726.1 282 FVSGTVGTGKTTLVKAILGD---LPLDSGTITIRSKRIgycSQMPWLMNGTVKQ 332
                      699999************99...4456666677766665566666666666655 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.15
  Viral_helicase1   5 GvpGcGKStlirkllrt 21 
                      G  G+GKS+l+ ++lr 
       KKY17726.1 813 GRTGSGKSSLLLSILRL 829
                      668************97 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.04
  Viral_helicase1    7 pGcGKStlirkllrts.liltvnrptaelltegk....pklpnlsvrtvdsflmalvkstkgkililDEylllhaGyi 79  
                       pG+G St+  +   t+    +++++ + l ++ k    ++ +++  + ++++lm   + t+gki++lDE+++   G+ 
       KKY17726.1  932 PGSGTSTSPTTTTTTDpKPSSTSSS-NPLSSPMKtyplSRGQQQLFSIARAILMREYP-TRGKIVLLDEATSNVDGET 1007
                       8999999999999999855444444.66666666666688888889999999999888.59*********98766665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.86     4e+02      75     128 ..      46     101 ..      26     149 .. 0.73
   2 ?    3.7   0.0     0.096        45       6      38 ..     282     311 ..     280     413 .. 0.80
   3 !    8.7   0.0    0.0028       1.3       3      46 ..     807     847 ..     805     915 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.86
      AAA_24  75 deleelclaev..irqnekaeskedkgdgkGygelaeefrrllkklqelrknvifi 128
                  el+ +cl+ v    q++k  + +   ++k++++++++ +++ k++ +  kn+ + 
  KKY17726.1  46 HELWAQCLQLVlvTSQASKYVTANITAKQKAWSMATQQRISITKAILDSMKNIKMM 101
                 5667777766633445555444455778899**************88887766443 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.096
      AAA_24   6 liyGpsgiGKTtlakel.gpkplfidtekGlksl 38 
                 ++ G  g+GKTtl+k + g     + ++ G+  +
  KKY17726.1 282 FVSGTVGTGKTTLVKAIlG----DLPLDSGTITI 311
                 678999********99832....24445555555 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0028
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdi 46 
                 +k+ i G  g+GK++l++++     +i +e G+  +d+ ++ +i
  KKY17726.1 807 QKVGICGRTGSGKSSLLLSI---LRLIEIESGSIYIDDVDISTI 847
                 7999****************...999999****99999999877 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   0.00014     0.067       2      34 ..     282     316 ..     281     340 .. 0.72
   2 ?   -0.4   0.0       3.1   1.5e+03       3      23 ..     811     831 ..     809     859 .. 0.75
   3 ?   -1.3   0.0       5.8   2.7e+03      50      83 ..     976    1009 ..     969    1030 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00014
                 EEESSTTSSHHHHHHHHHHHH..THEEEEEETTTC CS
         AAA   2 llyGppGtGKTllakavakel..gvefleisgsel 34 
                  ++G+ GtGKT+l+ka+  +l  ++  ++i  +++
  KKY17726.1 282 FVSGTVGTGKTTLVKAILGDLplDSGTITIRSKRI 316
                 689***************99733344555555544 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 3.1
                 EESSTTSSHHHHHHHHHHHHT CS
         AAA   3 lyGppGtGKTllakavakelg 23 
                 ++G  G GK++l  ++ + ++
  KKY17726.1 811 ICGRTGSGKSSLLLSILRLIE 831
                 68999*******999988764 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 5.8
                  HHHHHHTS......TSEEEEEETGGGHHHHHTTCCCHHHH CS
         AAA   50 fkeakeka......kpsilfiDEidalaksrsgseseeee 83  
                  f+ a++        + +i+++DE+ + +  +       ++
  KKY17726.1  976 FSIARAILmreyptRGKIVLLDEATSNVDGE------TDQ 1009
                  5555444444555334899999988877666......333 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.6      0.21        97      32      86 ..     377     418 ..     352     421 .. 0.62
   2 !   10.3   0.0    0.0014      0.65      42      88 ..     976    1015 ..     958    1017 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.21
     SbcCD_C  32 tlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatlle 86 
                 tlSGG++q la   la     ++        +++l++LD+  s lD+++ + +++
  KKY17726.1 377 TLSGGQRQRLA---LA----RAI------FARMDLLILDDVLSALDAKTERHIID 418
                 66666664332...22....222......22467788888888888888777665 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0014
     SbcCD_C   42 aylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88  
                  +++a a     l+++    +++ ++v+LDEA s++D+e+ +++ +++
  KKY17726.1  976 FSIARA----ILMRE---YPTRGKIVLLDEATSNVDGETDQQIQKVI 1015
                  444433....33333...488899*************9988876665 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   8.6e-05      0.04      19      45 ..     278     304 ..     259     314 .. 0.74
   2 ?    0.6   0.0       1.1   5.1e+02      19      46 ..     806     833 ..     789     838 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.6e-05
                 TEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgv 45 
                 g +++ +G +G+GKTtlv++++  l +
  KKY17726.1 278 GGLVFVSGTVGTGKTTLVKAILGDLPL 304
                 56799****************988744 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.1
                 TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgve 46 
                 g+ + + G  G+GK+ l  ++++ +++e
  KKY17726.1 806 GQKVGICGRTGSGKSSLLLSILRLIEIE 833
                 6678899***********9999988765 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   8.6e-05      0.04       9      48 ..     267     304 ..     262     319 .. 0.81
   2 ?   -1.3   0.0         2   9.6e+02      21      48 ..     805     832 ..     795     838 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.6e-05
                 HHHHH......HCTS-EEEEESTTSSCHHHHHHHHHHCHC CS
        PIF1   9 vfdaiieavlnekgklfFvtGsgGtgKtflwkallkklrs 48 
                 v++ i  ++++  g+l+Fv+G  GtgKt l ka+l  l  
  KKY17726.1 267 VLNDI--TTTAATGGLVFVSGTVGTGKTTLVKAILGDLPL 304
                 55555..556789*********************988765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2
                 CTS-EEEEESTTSSCHHHHHHHHHHCHC CS
        PIF1  21 kgklfFvtGsgGtgKtflwkallkklrs 48 
                  g+ + ++G  G+gK+ l+  +l  ++ 
  KKY17726.1 805 PGQKVGICGRTGSGKSSLLLSILRLIEI 832
                 57777899***********999988865 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.2    0.0044       2.1      35      59 ..     280     304 ..     270     315 .. 0.81
   2 ?    5.6   0.0     0.022        10      28      58 ..     801     831 ..     791     846 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0044
       AAA_7  35 pvllvGptGtGKtviikdllkkldk 59 
                  v++ G++GtGKt+++k +l  l+ 
  KKY17726.1 280 LVFVSGTVGTGKTTLVKAILGDLPL 304
                 58899*************9999884 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.022
       AAA_7  28 lllknkkpvllvGptGtGKtviikdllkkld 58 
                 l ++ +++v ++G tG+GK++++ ++l+ ++
  KKY17726.1 801 LSISPGQKVGICGRTGSGKSSLLLSILRLIE 831
                 5677889999************999887655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.2    0.0054       2.6       2      21 ..     280     299 ..     279     306 .. 0.89
   2 ?    5.2   0.0     0.038        18       5      24 ..     811     830 ..     807     900 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0054
                 CEEEEC-TTTCHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqkla 21 
                 lv++ G  G GKTtL++ + 
  KKY17726.1 280 LVFVSGTVGTGKTTLVKAIL 299
                 689**************997 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.038
                 EEC-TTTCHHHHHHHHHHHH CS
       NACHT   5 lqGeaGsGKTtLlqklalaw 24 
                 + G+ GsGK+ Ll ++ +++
  KKY17726.1 811 ICGRTGSGKSSLLLSILRLI 830
                 78***********9998865 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1    0.0027       1.3      22      43 ..     280     301 ..     263     308 .. 0.85
   2 ?   -1.6   0.0       2.7   1.3e+03      95     114 ..     387     406 ..     377     413 .. 0.80
   3 ?    4.9   0.0     0.028        13      22      43 ..     808     829 ..     796     840 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0027
                 EEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  22 vvalvGmgGvGKttlakqilnk 43 
                 +v+++G  G GKttl+k il +
  KKY17726.1 280 LVFVSGTVGTGKTTLVKAILGD 301
                 79****************9877 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.7
                 HHHHHCCCTTEEEEEEEE-S CS
      NB-ARC  95 klvrlLltkrfllvlDDVwe 114
                  l r++  +  ll+lDDV  
  KKY17726.1 387 ALARAIFARMDLLILDDVLS 406
                 57778888889*******86 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.028
                 EEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  22 vvalvGmgGvGKttlakqilnk 43 
                  v++ G+ G+GK+ l+ +il+ 
  KKY17726.1 808 KVGICGRTGSGKSSLLLSILRL 829
                 499************9999875 PP

>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.022        10      59      90 ..     274     306 ..     234     321 .. 0.77
   2 ?    6.6   0.1    0.0067       3.2     242     311 ..     572     640 ..     561     643 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.022
  AFG1_ATPase  59 vepvrg.lYlwGgvGrGKtylmdlffeslpvek 90 
                  + ++ g +++ G vG GKt l+      lp++ 
   KKY17726.1 274 TAATGGlVFVSGTVGTGKTTLVKAILGDLPLDS 306
                  33444426899************9999999865 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0067
  AFG1_ATPase 242 estlevkaRklrvraaagdlvrfsfaelceaarsqsdYlalaerfhtvlledVpvltkakedaarRfiaL 311
                  ++++++  R+l +   + +   f+ + +c    s+++Y++++  f++v++  +++l  ++ + + Rf+ L
   KKY17726.1 572 SQDMQMIDRRLPIALLQVGNNVFKLLAACVLLFSVQRYMTITLPFTAVIVYAIQKLY-LHTSRQLRFMDL 640
                  5677777888888888888889999*******************************9.999999999876 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.7    0.0018      0.83       2      23 ..     281     302 ..     280     311 .. 0.89
   2 ?    3.9   0.0     0.096        45       2      24 ..     809     831 ..     808     842 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0018
                 EEEE--TTSSHHHHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlell 23 
                 vf++G  G+GKtTlvk +l  l
  KKY17726.1 281 VFVSGTVGTGKTTLVKAILGDL 302
                 89**************998766 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.096
                 EEEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellk 24 
                 v i G+ G+GK+ l+  +l+l++
  KKY17726.1 809 VGICGRTGSGKSSLLLSILRLIE 831
                 789***************99885 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.8    0.0028       1.3      13      38 ..     275     298 ..     269     307 .. 0.82
   2 ?    2.4   0.0      0.24   1.1e+02      20      46 ..     808     834 ..     799     843 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0028
      AAA_30  13 lltsgdrvavltGpAGtGKttalkal 38 
                 ++t+g  ++++ G  GtGKtt++ka+
  KKY17726.1 275 AATGG--LVFVSGTVGTGKTTLVKAI 298
                 33444..99**************997 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.24
      AAA_30  20 vavltGpAGtGKttalkalreaweaag 46 
                  + + G+ G+GK+ +l ++ +++e + 
  KKY17726.1 808 KVGICGRTGSGKSSLLLSILRLIEIES 834
                 56688***********99999988774 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.017       8.2       1      33 [.     281     311 ..     281     353 .. 0.84
   2 ?    5.4   0.2     0.036        17       1      19 [.     809     827 ..     809     831 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.017
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS--- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTr 33 
                 + v G++  GK++++ a+lg+   p +++ +T 
  KKY17726.1 281 VFVSGTVGTGKTTLVKAILGDL--PLDSGTITI 311
                 5789****************86..666666665 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.036
                 EEEEEBTTTTHHHHHHHHH CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLl 19 
                 + ++G + sGKSS+l ++l
  KKY17726.1 809 VGICGRTGSGKSSLLLSIL 827
                 679***********98887 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0      0.04        19      20      44 ..     278     302 ..     265     312 .. 0.78
   2 ?    6.4   0.0     0.016       7.5      24      58 ..     810     843 ..     795     893 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.04
    ATPase_2  20 neiyfiYGpegsGKtaLlkeiienl 44 
                    +f+ G  g GKt+L+k i+  l
  KKY17726.1 278 GGLVFVSGTVGTGKTTLVKAILGDL 302
                 5679***************998665 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.016
    ATPase_2  24 fiYGpegsGKtaLlkeiienledkdkyviyyialr 58 
                  i G+ gsGK++Ll  i+    + +   iy++++ 
  KKY17726.1 810 GICGRTGSGKSSLLLSILRLI-EIESGSIYIDDVD 843
                 588************998777.6788899999875 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0019      0.89       1      29 [.     280     312 ..     280     352 .. 0.88
   2 ?    1.6   0.0      0.58   2.7e+02       4      18 ..     811     825 ..     809     834 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0019
      AAA_33   1 lvllvGlpGsGKstlaerllkklg....avlls 29 
                 lv++ G  G+GK+tl++ +l  l+    +++++
  KKY17726.1 280 LVFVSGTVGTGKTTLVKAILGDLPldsgTITIR 312
                 799***************999988776666665 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.58
      AAA_33   4 lvGlpGsGKstlaer 18 
                 ++G  GsGKs l+ +
  KKY17726.1 811 ICGRTGSGKSSLLLS 825
                 79********99755 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.073        34       6      35 ..     270     299 ..     267     335 .. 0.91
   2 ?    7.2   0.0    0.0075       3.5       9      47 ..     801     839 ..     796    1036 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.073
                  HHHS-EBTT-EEEEEESTTSSHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   6 DalfpivqGqrtlipgafgvGktvisqsls 35 
                  D  ++ + G+ + + g  g+Gkt+++++++
   KKY17726.1 270 DITTTAATGGLVFVSGTVGTGKTTLVKAIL 299
                  67789999*****************99986 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0075
                  S-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   9 fpivqGqrtlipgafgvGktvisqslskqsnsddaiiyv 47 
                  ++i  Gq+++i g  g Gk+ ++ s+++  + ++ +iy+
   KKY17726.1 801 LSISPGQKVGICGRTGSGKSSLLLSILRLIEIESGSIYI 839
                  67889******************9999987766666665 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.8    0.0024       1.2       4      21 ..     282     299 ..     280     310 .. 0.87
   2 ?    5.5   0.0     0.025        12       3      23 ..     809     829 ..     807     858 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0024
                 EEEESTTCCHHHHHHHHH CS
        cobW   4 vltGflGsGKTtLlnhll 21 
                  ++G +G+GKTtL++++l
  KKY17726.1 282 FVSGTVGTGKTTLVKAIL 299
                 699************998 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.025
                 EEEEESTTCCHHHHHHHHHCT CS
        cobW   3 tvltGflGsGKTtLlnhllen 23 
                 ++++G  GsGK++Ll ++l+ 
  KKY17726.1 809 VGICGRTGSGKSSLLLSILRL 829
                 5799************99964 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.6      0.37   1.8e+02      29      47 ..     284     302 ..     281     311 .. 0.80
   2 ?   11.0   0.1   0.00071      0.33      24      47 ..     807     830 ..     797     843 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.37
       DUF87  29 lgsTGsGKSntvavLleel 47 
                  g+ G+GK+++v+ +l  l
  KKY17726.1 284 SGTVGTGKTTLVKAILGDL 302
                 5888***********9776 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00071
       DUF87  24 rHlAilgsTGsGKSntvavLleel 47 
                 + ++i g+TGsGKS +  ++l+ +
  KKY17726.1 807 QKVGICGRTGSGKSSLLLSILRLI 830
                 5689************99999865 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.052        25       1      22 [.     281     302 ..     281     323 .. 0.77
   2 ?    4.1   0.0      0.13        61       3      23 ..     811     831 ..     809     854 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.052
  RNA_helicase   1 iwlyGpsgeGKStlakeLakal 22 
                   ++++G  g+GK+tl+k +  +l
    KKY17726.1 281 VFVSGTVGTGKTTLVKAILGDL 302
                   6899************976665 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.13
  RNA_helicase   3 lyGpsgeGKStlakeLakall 23 
                   ++G++g GKS+l  ++ + ++
    KKY17726.1 811 ICGRTGSGKSSLLLSILRLIE 831
                   89**********999666555 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.3     0.027        13      18      36 ..     281     299 ..     276     306 .. 0.89
   2 ?    5.2   0.0     0.017       8.2      16      43 ..     807     834 ..     795     847 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.027
  TrwB_AAD_bind  18 ilivGttGsGKtqalekll 36 
                    +++ Gt+G+GKt+ ++++l
     KKY17726.1 281 VFVSGTVGTGKTTLVKAIL 299
                    5789**********99988 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.017
  TrwB_AAD_bind  16 qhilivGttGsGKtqalekllrairarg 43 
                    q++ i G tGsGK+  l ++lr i+   
     KKY17726.1 807 QKVGICGRTGSGKSSLLLSILRLIEIES 834
                    6789*****************9987655 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.067        32      29      60 ..     265     299 ..     248     302 .. 0.81
   2 ?    6.1   0.2     0.013         6      42      58 ..     809     825 ..     796     829 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.067
                   -EEEEEGGGS-....SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  29 nplvldlkkma...shllvaGatgsGKStalntLi 60 
                   +p+  d+ + a   + + v G+ g+GK+t +++++
    KKY17726.1 265 EPVLNDITTTAatgGLVFVSGTVGTGKTTLVKAIL 299
                   6667777777777777899************9986 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.013
                   EEEE--TTSSHHHHHHH CS
  FtsK_SpoIIIE  42 llvaGatgsGKStalnt 58 
                   + ++G+tgsGKS  l +
    KKY17726.1 809 VGICGRTGSGKSSLLLS 825
                   569*********98865 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0      0.02       9.6      56      76 ..     281     301 ..     269     325 .. 0.87
   2 ?    3.4   0.0     0.075        36      51      76 ..     804     829 ..     778     865 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.02
      DUF815  56 vLLwGarGtGKSslvkallne 76 
                 v++ G+ GtGK +lvka+l +
  KKY17726.1 281 VFVSGTVGTGKTTLVKAILGD 301
                 6788*************9976 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.075
      DUF815  51 lpannvLLwGarGtGKSslvkallne 76 
                  p ++v + G  G+GKSsl+ ++l+ 
  KKY17726.1 804 SPGQKVGICGRTGSGKSSLLLSILRL 829
                 566778899**********9877643 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0096       4.5      17      49 ..     279     311 ..     267     316 .. 0.81
   2 ?    2.3   0.0      0.19        89      21      50 ..     811     840 ..     798     851 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0096
  Zeta_toxin  17 klillgGqpGAGKselaellkdelerqgnvvrl 49 
                  l++++G  G GK++l +++  +l  +++ +++
  KKY17726.1 279 GLVFVSGTVGTGKTTLVKAILGDLPLDSGTITI 311
                 589****************99998766666665 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.19
  Zeta_toxin  21 lgGqpGAGKselaellkdelerqgnvvrld 50 
                 + G +G+GKs+l+  + + +e +++ + +d
  KKY17726.1 811 ICGRTGSGKSSLLLSILRLIEIESGSIYID 840
                 6799********999988877666666666 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.2     0.011         5       3      25 ..     280     302 ..     278     328 .. 0.85
   2 ?    2.5   0.0      0.15        71       6      25 ..     811     830 ..     808     895 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.011
     DUF2075   3 vvlVtGvaGtGKtvvllnllael 25 
                 +v+V+G  GtGKt +  ++l +l
  KKY17726.1 280 LVFVSGTVGTGKTTLVKAILGDL 302
                 79*************99999887 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.15
     DUF2075   6 VtGvaGtGKtvvllnllael 25 
                 + G++G+GK+ +ll++l  +
  KKY17726.1 811 ICGRTGSGKSSLLLSILRLI 830
                 679*************9877 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   2.5      0.14        65      20      39 ..     279     298 ..     270     300 .. 0.91
   2 ?    9.1   0.1    0.0037       1.7      22      36 ..     809     823 ..     794     828 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.14
      AAA_23  20 gltlItGpNGaGKTTildAi 39 
                 gl+ ++G  G+GKTT++ Ai
  KKY17726.1 279 GLVFVSGTVGTGKTTLVKAI 298
                 899999*************9 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0037
      AAA_23  22 tlItGpNGaGKTTil 36 
                 + I+G +G+GK+++l
  KKY17726.1 809 VGICGRTGSGKSSLL 823
                 47************9 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.9    0.0058       2.7       7      31 ..     275     299 ..     269     308 .. 0.85
   2 ?   -0.5   0.1         3   1.4e+03     102     137 ..     395     432 ..     378     439 .. 0.80
   3 ?    0.2   0.0       1.9   8.9e+02       9      35 ..     805     831 ..     798     847 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0058
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhiv 31 
                 a++ ++++v +  GtGKT+++k+i+
  KKY17726.1 275 AATGGLVFVSGTVGTGKTTLVKAIL 299
                 778999***************9987 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 3
      AAA_19 102 eeellivDEf.qdvd.elqyrLlkallgekkklllvGD 137
                 + +lli D + + +d +++ ++++ l g++  ll++G 
  KKY17726.1 395 RMDLLILDDVlSALDaKTERHIIDHLIGRTGMLLIIGE 432
                 445777777549999999*********99955999996 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.9
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallv 35 
                 + + + + +  G+GK+ +l  i++l++
  KKY17726.1 805 PGQKVGICGRTGSGKSSLLLSILRLIE 831
                 5667889999*********99998765 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.3     0.012       5.7      13      50 ..     262     299 ..     253     309 .. 0.88
   2 ?    4.6   0.0     0.028        13      14      48 ..     791     825 ..     785     843 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.012
                 HHHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHH CS
        MeaB  13 peakellerllakaGraqvvGltGvPGaGkstlvealg 50 
                 ++a+ +l+ ++++a     v + G+ G+Gk tlv+a+ 
  KKY17726.1 262 STAEPVLNDITTTAATGGLVFVSGTVGTGKTTLVKAIL 299
                 47899*****************************9986 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.028
                 HHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHH CS
        MeaB  14 eakellerllakaGraqvvGltGvPGaGkstlvea 48 
                 +++  l++++ +    q+vG+ G  G+Gks l+  
  KKY17726.1 791 TSTLALKNITLSISPGQKVGICGRTGSGKSSLLLS 825
                 56666788888888899*************98754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1072 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1138  (0.0634726); expected 358.6 (0.02)
Passed bias filter:                      660  (0.0368119); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              38  [number of targets reported over threshold]
# CPU time: 0.86u 0.27s 00:00:01.12 Elapsed: 00:00:00.43
# Mc/sec: 7573.26
//
Query:       KKY17727.1  [L=592]
Description: putative serine threonine protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-64  217.8   0.0    2.1e-64  217.5   0.0    1.1  1  Pkinase         Protein kinase domain
    2.4e-28   99.2   0.0    3.3e-28   98.7   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
     0.0061   15.4   0.0     0.0087   14.9   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.039   13.6   0.1          1    8.9   0.0    2.2  2  FTA2            Kinetochore Sim4 complex subunit FTA2
      0.071   12.0   0.0      0.099   11.6   0.0    1.2  1  Haspin_kinase   Haspin like kinase domain
       0.09   12.1   0.0       0.25   10.6   0.0    1.8  2  Kinase-like     Kinase-like
       0.12   11.8   0.0          3    7.3   0.0    2.5  2  TERF2_RBM       Telomeric repeat-binding factor 2 Rap1-bindin
       0.13   13.0   0.4       0.13   13.0   0.4    2.3  2  Pkinase_C       Protein kinase C terminal domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.5   0.0   9.3e-68   2.1e-64       2     256 ..     245     499 ..     244     513 .. 0.93

  Alignments for each domain:
  == domain 1  score: 217.5 bits;  conditional E-value: 9.3e-68
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--H CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke..kkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslse 97 
                 ++l+ lG+G++G+V+ +++++tg+ +A K++kk + +  k+  +++ +E +il++++ hp+iv+ly++f+++++lyl+ley++ggel+++l  ++ ++e
  KKY17727.1 245 TTLKCLGKGTYGTVLLVKQNSTGRLYAQKQFKKASLTVHKKlvEQTKTERSILESVNrHPFIVNLYYAFQDHEKLYLILEYASGGELFHHLAMEKFFTE 343
                 67889******************************99999999******************************************************** PP

                 HHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.......BCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHH CS
     Pkinase  98 eeakkiakqilegleylH.skgiiHrDlKpeNiLidekgelKitDFGlakelesssk.......ltsfvgtseYlAPEvl..keneyskkvDvWslGvi 186
                 e a  ++++++ +l++lH + g+i+rDlKpeN L+d++g+l +tDFGl+k    +          ++ +gt eY+APEv+  ++++y+k++D+WslG +
  KKY17727.1 344 EVAAYYMAEMVLALDHLHhDVGVIYRDLKPENCLLDSEGHLLLTDFGLSKVSVDEPGspgssrcNSQGIGTIEYMAPEVIrgDHTGYGKACDWWSLGAL 442
                 *****************96678****************************998877789999*9999*************888899************* PP

                 HHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHH CS
     Pkinase 187 lyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltae 256
                    lltg+ppf g++ ++ +e++l++             kl  ++ +s++akdll++ll+k+p+kRl+a+
  KKY17727.1 443 GHDLLTGSPPFGGNNYTKIQENILKK-------------KLTLPYYLSPDAKDLLTRLLRKEPNKRLGAK 499
                 ************77766655555555.............78899***********************975 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0   1.5e-31   3.3e-28       3     250 ..     246     496 ..     244     499 .. 0.89

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 1.5e-31
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekek 99 
                  + k lG+G++G+V   + + ++ +   +   K+ + + +++  e+  +e +i++++ +hp iv+l+ +  ++e+l++++ey++gG+L ++L  +  + 
   KKY17727.1 246 TLKCLGKGTYGTVLLVKQN-STGRLYAQKQFKKASLTVHKKLVEQTKTERSILESVnRHPFIVNLYYAFQDHEKLYLILEYASGGELFHHLAME--KF 340
                  5688***********9999.5555566666777777788888999999********************************************98..88 PP

                  SBHHHHHHHHHHHHHHHHHHHHT.TEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE....EETTSSTSGGGGS-HHHHHHSE..EEHHHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLesk.klvHrdlaarNvLlsenkvvkisDfGLardiekddey....vkkeeaklpvkWmapEslkekk..ftsksDvWs 190
                  +t +    +++++  ++++L++   ++ rdl   N+Ll+++ +  ++DfGL++   ++       + ++++   +++mapE+++  +  + ++ D Ws
   KKY17727.1 341 FTEEVAAYYMAEMVLALDHLHHDvGVIYRDLKPENCLLDSEGHLLLTDFGLSKVSVDEPGSpgssRCNSQGIGTIEYMAPEVIRGDHtgYGKACDWWS 438
                  999999999***********87527****************************99666554555588899999**********988878********* PP

                  HHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS- CS
  Pkinase_Tyr 191 fGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRp 250
                   G l + ++t g+ p+ g + +++ e++ + k+l+ p + +++ ++l+++ ++++p++R 
   KKY17727.1 439 LGALGHDLLT-GSPPFGGNNYTKIQENILK-KKLTLPYYLSPDAKDLLTRLLRKEPNKRL 496
                  **********.*****99999998888864.6799999********************95 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.9e-06    0.0087     312     392 ..     350     428 ..     189     446 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.9e-06
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesga....rertGTleFmaievlkgeeHs 392
                     +++ + ++  L+++ g++ rD   +N l+      +e + lL D+ l k   d+  + g+     + +GT+e+ma ev++ ++H+
      KKY17727.1 350 MAEMVLALDHLHHDVGVIYRDLKPENCLLD-----SEGHLLLTDFGLSKVSVDEPGSPGSsrcnSQGIGTIEYMAPEVIR-GDHT 428
                     6788999**********************9.....78899*******99777666666555676899*************.6787 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00046         1      22      80 ..     242     302 ..     223     307 .. 0.83
   2 ?    2.2   0.0     0.051   1.1e+02     172     204 ..     344     377 ..     341     392 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00046
        FTA2  22 kdiefleyLgkglhsiVlkvkir..gkeYALKlFrfleaeeleeaeedlkiprealkelas 80 
                  d+  l+ Lgkg+ + Vl vk +  g+ YA K F++ + +  ++  e++k++r+ l++++ 
  KKY17727.1 242 TDFTTLKCLGKGTYGTVLLVKQNstGRLYAQKQFKKASLTVHKKLVEQTKTERSILESVNR 302
                 68999**********999998762266**********998888999999999888887765 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.051
        FTA2 172 elevsqlpkllrdlkklh.klgIvvrDlkeenyi 204
                 e+   ++ +++  l+ lh   g++ rDlk+en++
  KKY17727.1 344 EVAAYYMAEMVLALDHLHhDVGVIYRDLKPENCL 377
                 556667889999999986268***********97 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.4e-05     0.099     100     257 ..     218     395 ..     124     404 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.4e-05
  Haspin_kinase 100 adlasllnd.seklssevyqtkekdkevvlKviplevledvtiskelsl........kelkslklvkgtypglllllqdkvlkek........... 175
                     d++s+++    +  s++y+  +  +   lK +  ++   v   k  s                  k +     l +++k++++            
     KKY17727.1 218 DDTESQVTLcQDQRASNIYRKMTATDFTTLKCLGKGTYGTVLLVKQNSTgrlyaqkqF--------KKA----SLTVHKKLVEQTktersilesvn 301
                    3333333333566677777777777777777777766666666665555333333221........111....11111111111112223344444 PP

  Haspin_kinase 176 .........pdfyseqqlflvlllkdkGtdLeevklksw.kqalsifw..qivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRle 257
                               f+++++l+l+l+   +G+   ++ ++++  +    ++  ++v  L           RdL+ +n L+d++++  l d+ ls+++
     KKY17727.1 302 rhpfivnlyYAFQDHEKLYLILEYASGGELFHHLAMEKFfTEEVAAYYmaEMVLALDHLHHDVGVIYRDLKPENCLLDSEGHLLLTDFGLSKVS 395
                    555666677788889**************99999887752334445551244555556677777889***********************9987 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.55   1.2e+03      24      61 ..     254     292 ..     243     334 .. 0.60
   2 ?   10.6   0.0   0.00011      0.25     140     191 ..     341     391 ..     284     495 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.55
  Kinase-like  24 drsvvfevkdqetgeplavkvfllps.easkkdlerlke 61 
                    + v++vk + tg   a k+f   s    kk +e+ k 
   KKY17727.1 254 TYGTVLLVKQNSTGRLYAQKQFKKASlTVHKKLVEQTKT 292
                  555555555555555555555554443333333343333 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00011
  Kinase-like 140 kletiarlllTlqlirlaanLqa.kglvhgkftvdnllldekgglmlggftaL 191
                    e++a  ++ ++++    +L++  g++  +++++n lld +g l l++f+ L
   KKY17727.1 341 FTEEVAAYYM-AEMVLALDHLHHdVGVIYRDLKPENCLLDSEGHLLLTDFG-L 391
                  4455555666.55666667887626************************97.3 PP

>> TERF2_RBM  Telomeric repeat-binding factor 2 Rap1-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0013         3       4      22 ..     145     163 ..     142     167 .. 0.90
   2 ?    1.6   0.0     0.084   1.9e+02      19      39 ..     225     245 ..     224     246 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0013
   TERF2_RBM   4 tpttyGisvLkeAFkiLSd 22 
                 +p++ Gis+Lk   ++LS+
  KKY17727.1 145 RPASPGISALKMQLETLSN 163
                 799**************97 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.084
   TERF2_RBM  19 iLSdsqDpdAlFtKLDetDlv 39 
                 +L++ q +  +++K+  tD++
  KKY17727.1 225 TLCQDQRASNIYRKMTATDFT 245
                 79*****************97 PP

>> Pkinase_C  Protein kinase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       2.4   5.5e+03      27      41 ..     114     137 ..      43     138 .. 0.59
   2 ?   13.0   0.4   5.8e-05      0.13       1      46 []     534     576 ..     534     576 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.4
   Pkinase_C  27 m.........pagspltssvqenF 41 
                           +++s+++s  +++F
  KKY17727.1 114 TpydsgaedsDSSSRMASPRPKQF 137
                 033333333355666666666555 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 5.8e-05
   Pkinase_C   1 vesdeDtsNFDpeFTeedprdtppddmpagspltssvq......enFrGFtY 46 
                 ++++e   NF  eFT+  +   p++         + ++      ++F GF++
  KKY17727.1 534 ITDPELAENFSAEFTNLALSAHPET---------EGKDgavnatDPFGGFSF 576
                 67889999*********96655555.........4444555556*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.52
# Mc/sec: 3404.64
//
Query:       KKY17728.1  [L=279]
Description: putative sam dependent [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-14   54.3   0.0    2.4e-14   53.5   0.0    1.5  2  Methyltransf_23  Methyltransferase domain
    1.1e-09   38.8   0.0    9.1e-09   35.9   0.0    2.4  2  Methyltransf_25  Methyltransferase domain
    3.8e-08   33.9   0.0    1.3e-07   32.1   0.0    1.9  2  Methyltransf_11  Methyltransferase domain
    2.7e-06   28.0   0.0    2.2e-05   25.1   0.0    2.2  1  Methyltransf_12  Methyltransferase domain
    0.00023   21.0   0.0      0.024   14.5   0.0    2.4  2  Methyltransf_31  Methyltransferase domain
    0.00023   20.5   0.0      0.018   14.3   0.0    2.7  2  Methyltransf_2   O-methyltransferase domain
     0.0014   18.0   0.0     0.0048   16.2   0.0    1.7  1  CMAS             Mycolic acid cyclopropane synthetase
     0.0016   18.2   0.0      0.003   17.3   0.0    1.4  1  Methyltransf_16  Lysine methyltransferase
  ------ inclusion threshold ------
      0.016   14.7   0.0      0.068   12.6   0.0    1.9  2  Methyltransf_4   Putative methyltransferase
      0.018   14.6   0.0      0.041   13.4   0.0    1.5  1  MTS              Methyltransferase small domain
      0.066   13.1   0.0       0.13   12.2   0.0    1.5  1  UBA_6            UBA-like domain
      0.097   12.8   0.1       0.19   11.8   0.1    1.6  1  FtsJ             FtsJ-like methyltransferase
       0.12   12.6   0.1        7.7    6.8   0.0    2.3  2  Sterile          Male sterility protein


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   1.7e-17   2.4e-14      13     163 ..      24     185 ..      12     215 .. 0.71
   2 ?   -3.5   0.0       6.1   8.3e+03      99     112 ..     238     251 ..     232     259 .. 0.73

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 1.7e-17
  Methyltransf_23  13 lerllpklraggrvLdiGcGtGillevlren..gfsvtgvDlspeaveiae.kakkaqkdqfdeqeaaepqg.....kfdlIvlrevlehvpdp 98 
                      ++ l+p     ++ LdiG+GtGi++  +++    ++v g Dlsp++ ++++ + +++++d         + +     + d+I++r  +  ++d+
       KKY17728.1  24 RLHLAPFPSDIQNALDIGTGTGIWAIDFADMypDCQVMGTDLSPIQPGWVPpNCQFMVDDAD-------SGDewdlpQMDYIHSRIITVGIKDW 110
                      5556666666679***************7762257**************8333333333333.......333467778**************** PP

  Methyltransf_23  99 pellrqiatllkpgGylllseplasl.......kedrllldwlylvpag...rhisffsarslkelleeaGlevv 163
                      p+++++  + lkpgG+++++e+  +        +ed  + +w  ++ +           a  +++ l++ G+ +v
       KKY17728.1 111 PRYFQRCMKTLKPGGWIEVQEYIIDIycadgtcPEDDPAFQWSKINSEAmnkNGTDPRAAARFGDYLRDVGFVNV 185
                      *********************643333355566444443444433333222123355555555666666666555 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 6.1
  Methyltransf_23  99 pellrqiatllkpg 112
                        ll++++t lk++
       KKY17728.1 238 DVLLSKLHTALKDD 251
                      56788888888887 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   6.6e-12   9.1e-09       2      97 .]      38     125 ..      37     125 .. 0.87
   2 ?   -1.2   0.0       2.4   3.4e+03      58      80 ..     230     251 ..     209     264 .. 0.60

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 6.6e-12
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSS.STTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpf.edgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      Ld+G+GtG +++++a+ +++++v+g+D+s+ +   +        +n++f++ da++ ++ +  ++D+++s+  +  +  +d++++++++ + Lk
       KKY17728.1  38 LDIGTGTGIWAIDFADMYPDCQVMGTDLSPIQPGWVP-------PNCQFMVDDADSGDEwDLPQMDYIHSR--IITVGIKDWPRYFQRCMKTLK 122
                      9*****************99**********9987654.......4679******7755425558******6..6678899************** PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      pgG
       KKY17728.1 123 PGG 125
                      **9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.4
                      BSSSTTTEEEEEEESTGGG.SSHH CS
  Methyltransf_25  58 lpfedgsfDlvvssgalhh.lsde 80 
                      l   ++++D+ +s   lh  l+d+
       KKY17728.1 230 LGWSKEEVDVLLSK--LHTaLKDD 251
                      44455566666663..34324444 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   9.7e-11   1.3e-07       1      94 [.      38     127 ..      38     129 .. 0.89
   2 ?   -2.1   0.0       4.5   6.1e+03      54      69 ..     229     244 ..     216     261 .. 0.65

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 9.7e-11
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaekl.pfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      Ld+G+GtG+ a ++a+ +  ++v+g+Dls+ +  ++      ++ +++f+v da +       ++D + s+     ++d+ ++++ +++ Lkpg
       KKY17728.1  38 LDIGTGTGIWAIDFADMYpdCQVMGTDLSPIQPGWV------PP-NCQFMVDDADSGdEWDLPQMDYIHSRIITVGIKDWPRYFQRCMKTLKPG 124
                      8*******************************9888......33.4889999999753455568****************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       KKY17728.1 125 GWI 127
                      *97 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.5
                      CTSS-TT-EEEEEEES CS
  Methyltransf_11  54 klpfednsfDlvvsse 69 
                      kl   ++ +D+ +s+ 
       KKY17728.1 229 KLGWSKEEVDVLLSKL 244
                      4666677777777664 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.6e-08   2.2e-05       1      99 []      38     127 ..      38     127 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.6e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L+iG+GtG  +  +++  pd+++ g+D+sp +          + + n++++  +a++ ++ d   + D++++      +kd+ ++++++ k Lk
       KKY17728.1  38 LDIGTGTGIWAIDFADMYPDCQVMGTDLSPIQP--------GWVPPNCQFMVDDADSGDEWDL-PQMDYIHSRIITVGIKDWPRYFQRCMKTLK 122
                      8*****************************999........6776565566555555554455.5***************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       KKY17728.1 123 PGGWI 127
                      ***86 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.7e-05     0.024       6      38 ..      36      67 ..      32      69 .. 0.93
   2 ?    4.0   0.0     0.029        40      55     111 ..      76     131 ..      74     167 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.7e-05
  Methyltransf_31  6 rvlDlGCGtGeltfelaeelgpkaevvGiDise 38
                     + lD+G+GtG  ++ +a  ++p+++v+G D s+
       KKY17728.1 36 NALDIGTGTGIWAIDFA-DMYPDCQVMGTDLSP 67
                     679**************.9***********987 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.029
  Methyltransf_31  55 nveFeqgdieeleklledekfDlilsnevlnaladpdkileeiervlkpggillied 111
                      n++F + d+ + ++ +   + D+i+s+ +   ++d + ++++  + lkpgg + +++
       KKY17728.1  76 NCQFMVDDADSGDE-WDLPQMDYIHSRIITVGIKDWPRYFQRCMKTLKPGGWIEVQE 131
                      88999999999554.77789******9999*********************887665 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.3e-05     0.018      62     169 ..      33     134 ..      20     183 .. 0.67
   2 ?    3.4   0.0      0.03        42     140     171 ..     232     263 ..     197     275 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.3e-05
                     G-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS-----TTEE.EEES-TTTS-----SEEEEESSGGGS-HHHHHHHHHHHHHH CS
  Methyltransf_2  62 glkslvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehlsageeerve.fvgGdffkdslPeaDaillkrvlhDwsdekcvklLkrvkka 155
                      +++ +D+G GtG  a   + +yP ++v+  Dl+ +    +  + ++ +  v+    Gd +   lP+ D i    +    +d    +  +r+ k+
      KKY17728.1  33 DIQNALDIGTGTGIWAIDFADMYPDCQVMGTDLSPIQ---PGWVPPNCQFMVDdADSGDEW--DLPQMDYIHSRIITVGIKD--WPRYFQRCMKT 120
                     577889***************************8763...333333334444313456666..6788876655444433333..34667777777 PP

                     --TT-EEEEEE--- CS
  Methyltransf_2 156 lpagGkvivveavl 169
                     l++gG + v e ++
      KKY17728.1 121 LKPGGWIEVQEYII 134
                     77777776666555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.03
                     S-HHHHHHHHHHHHHH--TT-EEEEEE----T CS
  Methyltransf_2 140 wsdekcvklLkrvkkalpagGkvivveavlga 171
                     ws e++  lL +++ al+++ +   v++++  
      KKY17728.1 232 WSKEEVDVLLSKLHTALKDDRRHHCVDMIVHY 263
                     ******************99888888888765 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.5e-06    0.0048      65     165 ..      36     130 ..      18     135 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.5e-06
                 EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHH....HHHHHTS-SSS-EEEEES-GGG-----SEEEEES-GGGTSGGGHHHHHHHHHHHS-T CS
        CMAS  65 tlLdiGcGWGslvrravery.dvkvvglTlSkeqakla....kkrvdeldlerkvevklldyedldekvdrvvsvgafehvgkenydtffkklkkllke 158
                 + LdiG+G G  ++  ++ y d +v+g  lS  q  ++    + +vd++d+ ++ ++  +dy        r+++      vg + ++++f+++ k+lk+
  KKY17728.1  36 NALDIGTGTGIWAIDFADMYpDCQVMGTDLSPIQPGWVppncQFMVDDADSGDEWDLPQMDY-----IHSRIIT------VGIKDWPRYFQRCMKTLKP 123
                 569****************999************9886111144555555555554444444.....4566766......56799************** PP

                 T-EEEEE CS
        CMAS 159 dGllllh 165
                 +G + ++
  KKY17728.1 124 GGWIEVQ 130
                 **98766 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.2e-06     0.003      47      82 ..      34      69 ..      13      78 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.2e-06
  Methyltransf_16 47 klsvlELGsGtGlvGlavaellpeakviltDleell 82
                      +++l++G GtG+  + +a ++p+++v+ tDl+ ++
       KKY17728.1 34 IQNALDIGTGTGIWAIDFADMYPDCQVMGTDLSPIQ 69
                     5799***************************98765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.9e-05     0.068       5      33 ..      37      65 ..      34      69 .. 0.91
   2 ?   -1.5   0.0       1.1   1.5e+03     100     116 ..     114     130 ..     110     136 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.9e-05
                    EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4  5 vleiGcGkGeflvalAkknPdknflGiEi 33
                     l+iG+G G + ++ A + Pd++++G ++
      KKY17728.1 37 ALDIGTGTGIWAIDFADMYPDCQVMGTDL 65
                    58***********************9876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.1
                     HHHHHHHEEEEEEEEEE CS
  Methyltransf_4 100 lkelarvLkkgGvlela 116
                      +  +++Lk+gG +e++
      KKY17728.1 114 FQRCMKTLKPGGWIEVQ 130
                     678899******99875 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     3e-05     0.041      27      64 ..      30      66 ..       7      68 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3e-05
                CHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS 27 lpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64
                +p+++ +++lD+G+G+G+ ++ +a+++p+ +v  +d +
  KKY17728.1 30 FPSDI-QNALDIGTGTGIWAIDFADMYPDCQVMGTDLS 66
                44434.57***********************9999865 PP

>> UBA_6  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.6e-05      0.13       8      27 ..     227     246 ..     225     252 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.6e-05
       UBA_6   8 flKLGYseeqvqavLekLGp 27 
                 ++KLG+s+e+v+  L+kL +
  KKY17728.1 227 TRKLGWSKEEVDVLLSKLHT 246
                 79***************965 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00014      0.19      21      72 ..      33      86 ..       2     161 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
                TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCC CS
        FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditd 72
                  ++++D+g ++G w+   +     +++v++ Dl p++p    p+++++  d  +
  KKY17728.1 33 DIQNALDIGTGTGIWAIDFADMYP-DCQVMGTDLSPIQPGwvpPNCQFMVDDADS 86
                4488***********999999865.5***********988788999999555443 PP

>> Sterile  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.064        88      74      86 ..     109     121 ..     103     123 .. 0.86
   2 ?    6.8   0.0    0.0056       7.7      27      70 ..     213     259 ..     203     266 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.064
     Sterile  74 dwedYfenyilGl 86 
                 dw+ Yf+++++ l
  KKY17728.1 109 DWPRYFQRCMKTL 121
                 9*********987 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0056
     Sterile  27 kkikklvelleyFtlnewkfdndnlekLldrlsee...drkiFnfdv 70 
                  +i+++++ ++ F++++  +++++++ Ll++l+ +   dr+   +d+
  KKY17728.1 213 YNITEATRSMNAFITRKLGWSKEEVDVLLSKLHTAlkdDRRHHCVDM 259
                 568999999***********************998887777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1866.63
//
Query:       KKY17729.1  [L=285]
Description: putative diphthine synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-24   87.1   0.3    2.5e-24   86.4   0.3    1.3  1  TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.3   1.4e-28   2.5e-24       1     212 [.       1     236 [.       1     237 [. 0.72

  Alignments for each domain:
  == domain 1  score: 86.4 bits;  conditional E-value: 1.4e-28
  TP_methylase   1 klylVGvGpGdpellTvrAlralktadvvlgddsraleilldllaeel.eleapmgkekepleeayeeiaealaealragkdVvllvsGDPlvygtg 96 
                   +lylVG+G+ d  ++Tv++l+++k+a+ v+ ++  +++ill  ++  + e+++     + ++e +  +  ++l  + +  kd+++lv GDP+ ++t+
    KKY17729.1   1 MLYLVGLGLADETDITVKGLEIVKKAERVYLEA--YTSILL--VDTTKlETFYGRPIIVADREMVESDSDAIL--HEAHVKDIAFLVVGDPFGATTH 91 
                   79***************************9999..777774..333334555555555455555555444444..3344456*************** PP

  TP_methylase  97 selvealrareagieveviPGvsslqaaaarlgiplteggevlsvl..lpglakeeereleallan....gdtlvll...............kaprk 172
                     l+  lrare  i+ve++P  s+l+a+ +  g+ l+++g+++s +  l+ ++  + + ++++ +n     +tlvll                   k
    KKY17729.1  92 TDLI--LRARELSIPVETVPNASILSAIGTT-GLQLYNFGQTVSMVffLDNWK--PSSFYDRIKENasigLHTLVLLdikvkeqslenmargR---K 180
                   ***9..88888***********988877665.555555555555555977666..7778888888888889******6666665555543330...1 PP

  TP_methylase 173 .........laelaelL.............kealyddttpvavveragtedervvrgtleel 212
                            +                    +e +y ++  ++ v+r+g +d+r+v+gtl+el
    KKY17729.1 181 iyepprymtV------AqcaaqmleteetrQEGVYHEDSLAVGVARVGARDQRIVVGTLKEL 236
                   3333334452......03334445666653555999999*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2013.25
//
Query:       KKY17730.1  [L=511]
Description: putative aflyd sugr sugar regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-09   35.6   0.0    8.7e-09   34.8   0.0    1.4  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   4.9e-13   8.7e-09      94     190 ..     178     264 ..      86     288 .. 0.71

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 4.9e-13
  Fungal_trans  94 lqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddd 190
                   l  ++l ++y k + +r++  +++  av+la+ lg+ r+ syvg      l++ ea  rr+++w  F++++ +++++G   ll+ s   + LP  dd
    KKY17730.1 178 LVPFFLHAYYTKKR-RRYSSTLYIREAVTLAQLLGMDREASYVG------LPPQEAHFRRKIFWLLFVTERGHSMQYGVAALLRPS---VDLPQADD 264
                   44455555555555.4799999**********************......****************************99975543...44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3309.35
//
Query:       KKY17731.1  [L=493]
Description: hypothetical protein UCRPC4_g05364 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.52
# Mc/sec: 2859.27
//
Query:       KKY17732.1  [L=447]
Description: putative ph-responsive protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   9.9e-100  333.8   0.1    1.5e-99  333.2   0.1    1.2  1  Glyco_hydro_72  Glucanosyltransferase
  ------ inclusion threshold ------
        7.3    6.6  23.5         14    5.7  23.5    1.4  1  Herpes_capsid   Gammaherpesvirus capsid protein


Domain annotation for each model (and alignments):
>> Glyco_hydro_72  Glucanosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.2   0.1  1.7e-103   1.5e-99       5     293 ..      18     297 ..      14     311 .. 0.96

  Alignments for each domain:
  == domain 1  score: 333.2 bits;  conditional E-value: 1.7e-103
                     SSTTS--EEEETTEEEETTT-BBE-EEEEE--BE------SSB-GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEE CS
  Glyco_hydro_72   5 aeeaveaieikgnkffdsksgeqfyikGvdyqpggseevsslvdpladaeaCkrdikllkelgvntvrvyavdnskdhdeCmkalsdagiyvild 99 
                       +a+ +i+ +g kff ++ g+q+y+kGv+yq  ++       dpl d+ +Ck d++l+++lg+n++rvy vd++ dhd Cm+a++dag+y++ld
      KKY17732.1  18 QVSAIATISAVGSKFF-TSDGDQWYVKGVAYQLTEK-------DPLVDTTQCKLDASLMEDLGANAIRVYHVDADSDHDGCMTAFADAGVYLFLD 104
                     5678899*********.667899*********9877.......9*************************************************** PP

                     S-BTTBS--TTS-..---HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----EEEEE---TTTHHHH CS
  Glyco_hydro_72 100 lnepkesinradpassynedllervfkvidafkeyknvlgffaGnevvndksntaasayvkavvrdvkeyikkkkerkiPvGysaaddaelrvel 194
                     l + +++i+ +dp  ++ne++l+ + +v+d+f+ y+n+ g f Gnev+ +  ++ a++yv a+ rdvk+y  kk++r+iPvGysaad+a+lr  l
      KKY17732.1 105 LDTFNTAISGTDP--HWNETQLSAFEAVLDTFSGYDNLAGVFVGNEVLTTPADSGAAPYVLAAARDVKAYRDKKNYRDIPVGYSAADIASLRPML 197
                     *************..******************************************************************************** PP

                     HHHTTBTT-...--S-EEEEE----SS--HHHHSHHHHHHHHTT-SS-EEEEEE---SSSS---THHHHHTSHHHHTTEEEEEES-SB--SSS-- CS
  Glyco_hydro_72 195 aeylaCgded.dkadffglnmyeWCgkssfktsGydertkefenysiPlflseyGCnkvtprkftevealyseemtsvfsGGlvyeyseeannyG 288
                      +y++C d++ ++ dff+ln yeWCg ss+++sGy++ +++ e+y +P+f+se GCn+v+pr+f++  a+++++m   +sG ++ye+ ee nnyG
      KKY17732.1 198 QNYFECRDNAsERLDFFSLNAYEWCGDSSYTVSGYSTLQSQAEGYPVPIFFSETGCNTVQPRTFDDQAAILGSDMDGTWSGAIIYEWIEEVNNYG 292
                     *******99846*********************************************************************************** PP

                     SEEE- CS
  Glyco_hydro_72 289 lvkid 293
                     lv++ 
      KKY17732.1 293 LVSYG 297
                     **975 PP

>> Herpes_capsid  Gammaherpesvirus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  23.5    0.0015        14      87     155 ..     338     412 ..     325     421 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0015
  Herpes_capsid  87 drgaglsafealsltvP...PetaegttgGgsds.sasGasGgsastlsSgp.sssaaasglssgas.Stsdtas 155
                      g+ lsa+   s+t+P     ta+g t  +s s  ++G +G+  ++++Sg  +s ++asg++sgas Sts +a+
     KKY17732.1 338 PTGTPLSAYTDSSSTLPacpATTASGWTVDASASlPTLGQTGSNTASATSGAaTSGSSASGTASGASaSTSSAAA 412
                    568889***********8834578889998998888899999987777776414556677766555415555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2947.19
//
Query:       KKY17733.1  [L=504]
Description: putative zinc metallopeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00079   18.8   0.0      0.001   18.5   0.0    1.1  1  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   5.6e-08     0.001       1     158 [.      59     247 ..      59     331 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 5.6e-08
                   EEEE-EEEEEEECETTECSSS.....GHHHHH...................STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH....HHHHHHHH CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrga.....tledwl...................vppetaaealesgiktalksGtttvadmgattst....gieallea 69 
                   i+lP+l   H+Hl   ++++       + d+                     +p+++++     +++ l +G+t+ +++ + +st    ++e  ++ 
    KKY17733.1  59 ILLPALCHPHIHLDKCFILSSsldpsSYSDLApksgtfpealqltsvaksrFTPSDLYQRGTWLLSESLAAGVTSLRAFVEIDSTvefkCLETAIQL 155
                   689999999****88877777787774444447777777777999999************************************9999955555555 PP

                   HHTSSSEEEEEEESSEGGS...........GCCCSHHHHHHHHHHHHHHHHHHCTTTCEE.EEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEE.. CS
  Amidohydro_1  70 aeelplglrilggkvsldr...........gsaetskasreklkagaaetikgkadgvvk.valapheapafsdeelkealkeakkrdlpvaiHa.. 152
                    +++       + k+++             ++++  + +  + ++   + i      +v  ++ + ++ +++s   +++a++ a k+dl++++H+  
    KKY17733.1 156 KHDY-------ADKCVIQIcafaqdpifsgENGHKNLSLLSQALDKYGDEI------RVLgTTPYVESSVETSHRNIDWAIQTALKYDLHLDFHLdy 239
                   5552.......3444443344444555333444444444444433334444......466699999*****************************95 PP

                   ..TSSCHH CS
  Amidohydro_1 153 ..letkge 158
                      etk+ 
    KKY17733.1 240 nlDETKAP 247
                   55444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 3050.23
//
Query:       KKY17734.1  [L=313]
Description: putative homocitrate synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-07   30.5   4.6    2.9e-07   30.5   4.6    3.8  3  Cir_N         N-terminal domain of CBF1 interacting co-repres
     0.0085   16.3   3.4       0.31   11.3   0.1    2.7  2  E7            E7 protein, Early protein


Domain annotation for each model (and alignments):
>> Cir_N  N-terminal domain of CBF1 interacting co-repressor CIR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   4.6   3.2e-11   2.9e-07       1      37 []      10      46 ..      10      46 .. 0.98
   2 ?   -2.9   6.4      0.91   8.1e+03      22      34 ..     144     156 ..     140     160 .. 0.47
   3 ?   -3.3   2.9       1.2   1.1e+04      34      34 ..     233     233 ..     224     243 .. 0.51

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 3.2e-11
                SS-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Cir_N  1 SWHPgllkNqerVWkaEqkaleEkkkieerkkeieeE 37
                SW++ + +N++rV+++E++a+ +++++e r++ei+ E
  KKY17734.1 10 SWNVYNTDNVARVRRDEAEAKLREEEEERRQQEIDSE 46
                9*********************************977 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.91
                 HHHHHHHHHHHHH CS
       Cir_N  22 eEkkkieerkkei 34 
                 e +k+ +++k+e+
  KKY17734.1 144 EAEKEAQKKKREY 156
                 3333344444444 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.2
                 H CS
       Cir_N  34 i 34 
                 +
  KKY17734.1 233 R 233
                 1 PP

>> E7  E7 protein, Early protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   1.0    0.0052        46      14      43 ..      16      45 ..       9      51 .. 0.74
   2 !   11.3   0.1   3.4e-05      0.31       5      51 ..     116     160 ..     113     181 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0052
                XXXXX--S------XXXXXXXXXXXXXXXX CS
          E7 14 qpevldllceeelesedeeeeeedeptlkd 43
                +++v+ +  +e+  ++ eeeee+++++ ++
  KKY17734.1 16 TDNVARVRRDEAEAKLREEEEERRQQEIDS 45
                567788889999999999999998554443 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 3.4e-05
                 XXXXXXXXXXXXXX--S------XXXXXXXXXXXXXXXXXXXXEE.E CS
          E7   5 tlkdlvLeeqpevldllceeelesedeeeeeedeptlkdktprrpgY 51 
                 +++d  L++q+ +++l+++e+   e+++e e++ +  k+k++ + +Y
  KKY17734.1 116 SITDTSLKDQKGNINLFADERGRVEKNDEAEKEAQ--KKKREYEDQY 160
                 578999***************99999999999844..3333333334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1445  (0.0805957); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 1996.89
//
Query:       KKY17735.1  [L=836]
Description: putative vesicle-fusing atpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-52  175.7   0.0    7.3e-39  133.2   0.0    2.3  2  AAA              ATPase family associated with various cellul
    2.4e-09   37.6   0.1    0.00011   22.5   0.0    3.8  2  AAA_22           AAA domain
    3.2e-09   36.4   0.1    1.3e-08   34.5   0.0    2.1  1  AAA_lid_3        AAA+ lid domain
    4.6e-09   36.3   0.0    1.1e-08   35.1   0.0    1.7  1  CDC48_N          Cell division protein 48 (CDC48), N-terminal
    1.3e-08   35.4   0.0     0.0012   19.2   0.0    3.5  3  AAA_16           AAA ATPase domain
    8.4e-08   32.5   0.0    4.9e-05   23.5   0.0    2.5  2  AAA_2            AAA domain (Cdc48 subfamily)
    1.2e-07   31.2   0.1      0.016   14.5   0.0    2.3  2  TIP49            TIP49 P-loop domain
    1.1e-06   28.7   0.0      0.029   14.4   0.0    2.5  2  AAA_14           AAA domain
    1.4e-06   27.9   0.0    2.4e-05   24.0   0.0    2.5  2  CDC48_2          Cell division protein 48 (CDC48), domain 2
    6.2e-06   26.1   0.0      0.012   15.4   0.0    2.6  2  AAA_24           AAA domain
    8.5e-06   25.3   0.0     0.0054   16.1   0.0    2.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      1e-05   25.4   0.1      0.043   13.6   0.1    2.8  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    1.8e-05   24.8   0.3      0.002   18.1   0.0    3.3  2  AAA_5            AAA domain (dynein-related subfamily)
    2.1e-05   24.8   0.0      0.047   14.1   0.0    2.6  2  RNA_helicase     RNA helicase
    5.6e-05   23.7   0.0      0.016   15.8   0.0    3.3  3  AAA_18           AAA domain
    0.00028   20.1   0.0       0.47    9.5   0.0    2.6  2  Parvo_NS1        Parvovirus non-structural protein NS1
    0.00031   20.7   0.3         14    5.5   0.0    4.0  4  ATPase_2         ATPase domain predominantly from Archaea
    0.00056   19.5   0.1      0.026   14.1   0.0    2.6  2  AAA_7            P-loop containing dynein motor region
    0.00058   20.0   0.0       0.13   12.4   0.0    2.6  2  AAA_33           AAA domain
     0.0008   19.4   0.5        6.6    6.6   0.0    3.6  3  NACHT            NACHT domain
    0.00094   19.5   0.0       0.29   11.4   0.0    2.3  2  AAA_28           AAA domain
     0.0013   18.7   0.0       0.19   11.8   0.0    2.4  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0028   17.4   0.0      0.099   12.4   0.0    2.5  2  IstB_IS21        IstB-like ATP binding protein
     0.0041   16.6   0.0          2    7.8   0.0    2.4  2  PhoH             PhoH-like protein
     0.0052   16.2   0.6      0.028   13.8   0.3    2.2  3  ATPase           KaiC
     0.0056   16.4   0.0       0.66    9.7   0.0    2.6  2  Sigma54_activat  Sigma-54 interaction domain
     0.0073   15.5   0.1        1.4    8.0   0.1    2.7  3  NB-ARC           NB-ARC domain
     0.0084   16.6   0.2      0.045   14.3   0.1    2.1  2  ABC_tran         ABC transporter
     0.0095   15.4   0.0        4.3    6.7   0.0    3.1  2  TniB             Bacterial TniB protein
  ------ inclusion threshold ------
      0.046   13.3   1.9        2.1    7.9   0.0    3.1  3  AAA_25           AAA domain
        0.1   13.0   0.0       0.67   10.3   0.0    2.3  2  AAA_19           AAA domain
        0.1   12.0   0.1        1.2    8.5   0.0    2.2  2  IPT              Isopentenyl transferase
       0.12   12.1   0.0       0.41   10.4   0.0    1.8  2  AAA_30           AAA domain
       0.14   11.9   0.0       0.56   10.0   0.0    1.9  2  AAA_11           AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2   0.0   1.4e-41   7.3e-39       1     131 [.     352     493 ..     352     494 .. 0.94
   2 !   40.4   0.0   6.7e-13   3.5e-10       1     124 [.     634     756 ..     634     764 .. 0.84

  Alignments for each domain:
  == domain 1  score: 133.2 bits;  conditional E-value: 1.4e-41
                 EEEESSTTSSHHHHHHHHHHHHT.HEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHHHH...TTCCCHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg.vefleisgsellskyvgesekkirelfkeakeka.......kpsilfiDEidalaksr...sgseseeeervvnq 88 
                 +llyGppGtGKTl+a+++ k l+ +e   i+g+e+l+kyvg+se++ir+lf++a+++        + +i+++DE+da++k+r    g+ ++++++vvnq
  KKY17735.1 352 ILLYGPPGTGKTLIARQIGKMLNaREPKVINGPEVLNKYVGQSEENIRKLFADAEKEYkekgdesGLHIIIFDELDAVCKQRgsgAGGGTGVGDSVVNQ 450
                 69********************95678***************************7766788899777****************888889********** PP

                 HHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  89 Llteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 Ll++ldgv++  +++++ig+tnr+d++d+allr gR+++++ei+
  KKY17735.1 451 LLSKLDGVDQL-NNILLIGMTNRMDMIDDALLRpGRLEVHLEIS 493
                 **********7.66**************************9987 PP

  == domain 2  score: 40.4 bits;  conditional E-value: 6.7e-13
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsell.skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkk 98 
                 vll+Gp   GKT+la  +a +++++f+++  +e +      ++ + +++ f +a +++  s++++D+i++++        +++++v+++L+  l ++  
  KKY17735.1 634 VLLWGPASSGKTALAARIAIDSEFPFVKLVSPEQMvGFNEAAKVQALSKAFMDAYKSE-MSVIVLDNIERIVDWV-PIGPRFSNTVLQTLMVLLRKQPP 730
                 79*******************************9933334445566777777777765.8***********9988.66899****************** PP

                 SSSTEEEEEEESSGGGSTHHHHSTTS CS
         AAA  99 keskvivigatnrpdkldpallrgRf 124
                 k ++++vi+++n+ + l++  +++ f
  KKY17735.1 731 KGRRLLVIATSNERNVLQQLDILNSF 756
                 *************8888776554555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0     2e-07   0.00011       8      70 ..     352     415 ..     347     479 .. 0.75
   2 !    7.8   0.0    0.0071       3.7      72     131 ..     674     741 ..     633     747 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2e-07
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee...erpevv.fvtlpsstsskdllrellralglelka 70 
                 ++++G++GtGKT+ +r++ + l++++       ++pev+ ++  +s+++ ++l+ +  +++++++++
  KKY17735.1 352 ILLYGPPGTGKTLIARQIGKMLNARE---PkviNGPEVLnKYVGQSEENIRKLFADAEKEYKEKGDE 415
                 799*******************7553...1456999999999999999**************99888 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0071
      AAA_22  72 rlsseellealeqalraravielliiDEaqhlr.........seealeeLrsllnl.srkgvqliLvGtp 131
                  ++ ++l +a+ +a ++ +   ++++D+++++          s+++l++L  ll     kg +l+++ t 
  KKY17735.1 674 AAKVQALSKAFMDAYKSEMS--VIVLDNIERIVdwvpigprfSNTVLQTLMVLLRKqPPKGRRLLVIATS 741
                 45677888999999999988..*********655887765444999999966666445566666666555 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   2.5e-11   1.3e-08       1      41 [.     520     560 ..     520     577 .. 0.86

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 2.5e-11
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitme 41 
                 dvdl+eLA +T+++SGA++  l++ A   A  r  k  tm+
  KKY17735.1 520 DVDLAELAHLTKNFSGAEINGLVKSATSFAFNRHVKVGTMA 560
                 9******************************9987766654 PP

>> CDC48_N  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   2.1e-11   1.1e-08       2      84 ..      99     179 ..      98     181 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 2.1e-11
                 EEEECCS.S-CSSTTEEEE-HHHHHHHTS-TTSEEEEECCCCEEEEEEEBSTTST.TTTEEEE-HHHHHHHT--TTEEEEEEEE- CS
     CDC48_N   2 LrVaeap.qedvgrgivridpedmeelglepgdvveiegkrkTvaivwpaepede.gkgiIrmdgvtRknagvsiGdkVtVrkae 84 
                 Lr a+ap ++ + r+iv+++p+d+   +  + dv+ +   +    +v +a+p d+  +g+I m++ +R+++g+ + d V+V++++
  KKY17735.1  99 LRPAKAPdNSYTFRNIVAVSPADIPYPKDGSQDVLLLLQGQ----YVASARPLDSfAPGSIGMSDAQRTWMGIALTDMVRVERYD 179
                 899***********************999999**9999888....8************************************986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.3e-06    0.0012      25      69 ..     350     390 ..     340     467 .. 0.72
   2 !    9.2   0.0    0.0028       1.5      25      44 ..     632     651 ..     614     656 .. 0.81
   3 ?    2.5   0.0      0.33   1.7e+02     120     169 ..     677     737 ..     652     738 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.3e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy 69 
                   +ll+G++G+GK+ ++r++ + l++++  +++g  + +     y
  KKY17735.1 350 KGILLYGPPGTGKTLIARQIGKMLNAREPKVINGPEVLN----KY 390
                 689*******************99999999999988888....33 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0028
      AAA_16  25 elvllsGesGvGKsslvrel 44 
                  +vll G++ +GK++l+ ++
  KKY17735.1 632 FSVLLWGPASSGKTALAARI 651
                 689*************9877 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.33
      AAA_16 120 lellkrllallsrderplvlvlDdlq..........wadeaslqllaaLlrlles.k.pllv 169
                  ++l+++++ + + e   v+vlD+++          ++  + lq l  Llr +   + +llv
  KKY17735.1 677 VQALSKAFMDAYKSEM-SVIVLDNIErivdwvpigpRFSNTVLQTLMVLLRKQPPkGrRLLV 737
                 5677888855655355.8********888877777777778888888888877765436666 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   9.4e-08   4.9e-05       5     105 ..     351     457 ..     347     463 .. 0.72
   2 ?    6.5   0.0     0.016       8.2       2      83 ..     630     706 ..     629     727 .. 0.68

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 9.4e-08
                 -EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTS......EEEEETGGG----...--------- CS
       AAA_2   5 silllgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegG......ivllDEidKihpk...essgadvSr 92 
                  ill gp g+Gkt++a+++ ++l++   ++  +++  e+l     ++e+ + +l    ++ ++++e+G      i+ +DE+d ++++   +  g    +
  KKY17735.1 351 GILLYGPPGTGKTLIARQIGKMLNA---REPKVINGPEVLNkyVGQSEENIRKLFA--DAEKEYKEKGdesglhIIIFDELDAVCKQrgsGAGGGTGVG 444
                 5899********************5...6666677777777453466666666654..44455566666667**************9765333333345 PP

                 HHHHHHHHHHHH- CS
       AAA_2  93 egVqrdLLqileg 105
                 + V++ LL  l+g
  KKY17735.1 445 DSVVNQLLSKLDG 457
                 6677777766665 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.016
                 ----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG---- CS
       AAA_2   2 piisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpk 83 
                 p+ s+ll gp  +Gkt la  +a   +     +++ +   e + + + +  v+ l  a  ++  + e  ++ lD+i++i   
  KKY17735.1 630 PLFSVLLWGPASSGKTALAARIAIDSEF----PFVKLVSPEQMVGFNEAAKVQALSKA-FMDAYKSEMSVIVLDNIERIVDW 706
                 6789999999999999988777765554....66666555555543336666666544.4455567888*********9875 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     3e-05     0.016      51      97 ..     350     395 ..     339     413 .. 0.84
   2 !   14.4   0.0   3.2e-05     0.017      52     104 ..     633     685 ..     611     695 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkkte 97 
                 +++Ll Gp+gtGkt +a  i k l++  p  +++g ev    v ++e
  KKY17735.1 350 KGILLYGPPGTGKTLIARQIGKMLNAREPK-VINGPEVLNKYVGQSE 395
                 89***********************99885.5899999988887776 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 3.2e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXX CS
       TIP49  52 avLlaGpsgtGktalaiaiskelgedvpfvalsgse..vyslevkktevltqalr 104
                 +vLl Gp+++Gktala  i+  + ++ pfv+l++ e  v  +e  k  +l +a+ 
  KKY17735.1 633 SVLLWGPASSGKTALAARIA--IDSEFPFVKLVSPEqmVGFNEAAKVQALSKAFM 685
                 69**************9997..7899******99873345689999999999886 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00042      0.22       5      76 ..     352     429 ..     349     465 .. 0.74
   2 !   14.4   0.0   5.5e-05     0.029       5      83 ..     634     710 ..     633     743 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00042
      AAA_14   5 lvitGaRrvGKTtllkqlikell......vkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76 
                 +++ G+  +GKT +++q+ k l       ++  ++l   + + ++  ++ +++ +++++ek  e++ +++++DE   v
  KKY17735.1 352 ILLYGPPGTGKTLIARQIGKMLNarepkvINGPEVLNKYVGQSEENIRKLFADAEKEYKEKGDESGLHIIIFDELDAV 429
                 7899**************988886555554444444333333333333345577888888844469999*****8765 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 5.5e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderd....kkladpekllelileklkeekktylflDEiqevpewekal 83 
                 +++ G+  +GKT l+ +++ ++     ++ +++l ++++     ++a+ + l +++++ +k+ ++++++lD i ++ +w  + 
  KKY17735.1 634 VLLWGPASSGKTALAARIAIDS-----EFPFVKLVSPEQmvgfNEAAKVQALSKAFMDAYKS-EMSVIVLDNIERIVDWVPIG 710
                 57889999*********98554.....47888888877755543333444677889998666.9************9998765 PP

>> CDC48_2  Cell division protein 48 (CDC48), domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   4.6e-08   2.4e-05       1      46 [.     208     260 ..     208     280 .. 0.84
   2 ?    0.9   0.0      0.78   4.1e+02       3      22 ..     320     339 ..     318     339 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 4.6e-08
                 ..SCCCCH.HHHCCCTTEEE-TTEEEEECCTCCCEEEEEEEECCCC......S CS
     CDC48_2   1 ridgdema.ylkrqFlgrpvtkGdlvvfefkgqeiklvVvstePkg......p 46 
                 ++d+d +a +l +  +++++++G++++ +  + ++ lvV+++++++       
  KKY17735.1 208 PYDQDYLAnELAKICENQVFAPGQRFMLDLASIPMLLVVKTVQVVDlsekasS 260
                 79******************************************996665442 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.78
                 SCCCCH.HHHCCCTTEEE-TT CS
     CDC48_2   3 dgdema.ylkrqFlgrpvtkG 22 
                 d+++    ++r+F +r++ +G
  KKY17735.1 320 DTEF-GtIFRRAFASRIFPPG 339
                 6664.449*********9776 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.2e-05     0.012       5      78 ..     352     430 ..     349     437 .. 0.68
   2 !    7.8   0.0    0.0045       2.4       4      78 ..     633     704 ..     632     708 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.2e-05
      AAA_24   5 iliyGpsgiGKTtlakel.....gpkplfidtekGlksldadkfpdie.swedfldevvelaaeladyktlviDtidele 78 
                 il+yGp+g+GKT +a+++       +p +i+  + l++  +   ++i+  ++d  +e++e + ++++++++++D +d ++
  KKY17735.1 352 ILLYGPPGTGKTLIARQIgkmlnAREPKVINGPEVLNKYVGQSEENIRkLFADAEKEYKE-KGDESGLHIIIFDELDAVC 430
                 89****************777776667777766655555555555554333333333333.5666777777777777765 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0045
      AAA_24   4 kiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel.......aaeladyktlviDtidele 78 
                 ++l++Gp+ +GKT la+++      id e       + k++++e++  f ++++         +a +++ +++v+D+i+ ++
  KKY17735.1 633 SVLLWGPASSGKTALAARI-----AIDSEF-----PFVKLVSPEQMVGFNEAAKVQalskafmDAYKSEMSVIVLDNIERIV 704
                 589***************9.....444444.....22222222222222222222233344456667777888888887766 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     1e-05    0.0054      25      49 ..     352     376 ..     344     397 .. 0.87
   2 !    6.5   0.0    0.0091       4.8      24      43 ..     633     652 ..     630     694 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsllppl 49 
                   +ll+GppG+GKt++a+++ ++l + 
    KKY17735.1 352 ILLYGPPGTGKTLIARQIGKMLNAR 376
                   89****************9999765 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0091
  Mg_chelatase  24 nlllvGppGsGKtmlakrlp 43 
                   ++ll Gp+ sGKt la+r++
    KKY17735.1 633 SVLLWGPASSGKTALAARIA 652
                   689**************985 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   8.1e-05     0.043      33      68 ..     349     385 ..     343     392 .. 0.80
   2 !    8.4   0.0    0.0032       1.7      18      67 ..     615     665 ..     608     707 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.1e-05
      RuvB_N  33 ldhvllyGpPGlGkttlakiiakelgvk.lkitsgPv 68 
                 +  +llyGpPG Gkt +a+ i k l+++  k+  gP 
  KKY17735.1 349 VKGILLYGPPGTGKTLIARQIGKMLNARePKVINGPE 385
                 4568*****************9999875146666765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0032
      RuvB_N  18 klkifieaakkre.ealdhvllyGpPGlGkttlakiiakelgvklkitsgP 67 
                 + ++f++  kk + ++l  vll Gp   Gkt+la+ ia + +  +    +P
  KKY17735.1 615 ESRLFVNQVKKPDsTPLFSVLLWGPASSGKTALAARIAIDSEFPFVKLVSP 665
                 5566776666654156889****************9998887765544444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.8e-06     0.002       2      26 ..     352     377 ..     351     390 .. 0.82
   2 ?    3.0   0.1      0.18        93       2      20 ..     634     652 ..     633     755 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3.8e-06
                 EEEE--SSSSHHHHHHHGGGGB.S-- CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nre 26 
                 +lL GppGtgK+ +a+++ ++l  re
  KKY17735.1 352 ILLYGPPGTGKTLIARQIGKMLnARE 377
                 89********************5444 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.18
                 EEEE--SSSSHHHHHHHGG CS
       AAA_5   2 vlLvGppGtgKselaerla 20 
                 vlL Gp  +gK+ la r+a
  KKY17735.1 634 VLLWGPASSGKTALAARIA 652
                 8999999999999999886 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0     9e-05     0.047       1      50 [.     352     393 ..     352     421 .. 0.68
   2 !    8.1   0.0    0.0063       3.3       1      61 [.     634     703 ..     634     742 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 9e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgq 50 
                   i+lyGp+g+GK+++a+++ k l       ++++v+      +++++Y gq
    KKY17735.1 352 ILLYGPPGTGKTLIARQIGKMLN-----AREPKVIN---GPEVLNKYVGQ 393
                   789**************777776.....33344433...45555555544 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0063
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl........klkkkdsvysrnpeddfwdgYt.gqevvvidDfgqv 61 
                   ++l+Gp+  GK+ la ++a + +  +            ++   +++ ++ f+d Y+ +  v+v d + ++
    KKY17735.1 634 VLLWGPASSGKTALAARIAIDSEFPFvklvspeqMVGFNEAAKVQALSKAFMDAYKsEMSVIVLDNIERI 703
                   679**************888887444677777774444445555889999******55566666666665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     3e-05     0.016       1      25 [.     352     391 ..     352     428 .. 0.73
   2 ?    1.0   0.0       1.1   5.9e+02       5      67 ..     439     510 ..     438     552 .. 0.69
   3 ?    2.5   0.0      0.38     2e+02       1      44 [.     634     675 ..     634     734 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf...............g 25 
                 Ill G+pG+GKt +a+ + k+l+                +
  KKY17735.1 352 ILLYGPPGTGKTLIARQIGKMLNArepkvingpevlnkyV 391
                 99*******************9656876555444443330 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 1.1
      AAA_18   5 GtpGvGKttlakeLskrlgf..........gvnlrdvakenglllevdpealdeskrldedkldklldaleen 67 
                 G  GvG + + + Lsk+ g+           +n +d++ +  l+ ++ +  + e    de+ ++++l+++ + 
  KKY17735.1 439 GGTGVGDSVVNQLLSKLDGVdqlnnilligMTNRMDMIDDALLRPGRLEV-HLEISLPDEHGRQQILKIHTQK 510
                 55799999999999998676777778999888888888888888888777.4444444444444444444443 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.38
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe 44 
                 +ll G++ +GKt la +++      +   ++++ ++++  ++++
  KKY17735.1 634 VLLWGPASSGKTALAARIAIDS--EFPFVKLVSPEQMVGFNEAA 675
                 6899***********9986554..55555555555555555444 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00089      0.47     117     137 ..     352     372 ..     343     376 .. 0.90
   2 !    7.5   0.0    0.0036       1.9     117     135 ..     634     652 ..     628     669 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00089
   Parvo_NS1 117 vwfyGpantGktnlaeaIaka 137
                 +++yGp+ tGkt +a++I k 
  KKY17735.1 352 ILLYGPPGTGKTLIARQIGKM 372
                 89***************9776 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0036
   Parvo_NS1 117 vwfyGpantGktnlaeaIa 135
                 v+++Gpa+ Gkt la+ Ia
  KKY17735.1 634 VLLWGPASSGKTALAARIA 652
                 89**************665 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.032        17      23      46 ..     352     375 ..     342     382 .. 0.82
   2 ?    3.3   0.1      0.12        64      93     131 ..     389     430 ..     375     439 .. 0.75
   3 ?    5.5   0.0     0.026        14      22      41 ..     633     652 ..     623     661 .. 0.83
   4 ?    0.8   0.0      0.72   3.8e+02     103     167 ..     677     743 ..     660     751 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.032
    ATPase_2  23 yfiYGpegsGKtaLlkeiienled 46 
                 +++YGp g GKt + ++i + l+ 
  KKY17735.1 352 ILLYGPPGTGKTLIARQIGKMLNA 375
                 689************999777655 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.12
    ATPase_2  93 eilkeksklvfkaielllekikkkgkk...iiiiiDelqkli 131
                 + + +  +++ k ++++ ++ k+kg +    iii+Del  + 
  KKY17735.1 389 KYVGQSEENIRKLFADAEKEYKEKGDEsglHIIIFDELDAVC 430
                 333466777777778888888888888**99******98765 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.026
    ATPase_2  22 iyfiYGpegsGKtaLlkeii 41 
                  ++++Gp +sGKtaL  +i+
  KKY17735.1 633 SVLLWGPASSGKTALAARIA 652
                 57899**********98876 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.72
    ATPase_2 103 fkaielllekikkkgkkiiiiiDelqklid...lglngaellvkeLlnliesltkekhlcvviclsSe 167
                  +a+++++++  k+    +i++D + +++d   +g + ++ +++ L+ l+ +++ + +  +vi++s e
  KKY17735.1 677 VQALSKAFMDAYKSEM-SVIVLDNIERIVDwvpIGPRFSNTVLQTLMVLLRKQPPKGRRLLVIATSNE 743
                 4677777777777644.68889******9844456677888999999999999989999999988876 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   4.9e-05     0.026      29      61 ..     345     377 ..     340     384 .. 0.84
   2 ?    2.2   0.0      0.21   1.1e+02      35      52 ..     633     650 ..     629     686 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.9e-05
       AAA_7  29 llknkkpvllvGptGtGKtviikdllkkldkek 61 
                  +++ k +ll+Gp GtGKt+i++++ k l+ ++
  KKY17735.1 345 GIQHVKGILLYGPPGTGKTLIARQIGKMLNARE 377
                 5789999*****************999888654 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.21
       AAA_7  35 pvllvGptGtGKtviikd 52 
                 +vll Gp+ +GKt+++ +
  KKY17735.1 633 SVLLWGPASSGKTALAAR 650
                 69************9887 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00024      0.13       2      48 ..     352     401 ..     352     425 .. 0.80
   2 ?    4.9   0.0      0.05        26       2      24 ..     634     656 ..     634     749 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00024
      AAA_33   2 vllvGlpGsGKstlaerllkklg...avllssdtlrrrlfgtdqqsktdy 48 
                 +ll G+pG+GK+  a+++ k l      +++ ++++++++g+ +++++++
  KKY17735.1 352 ILLYGPPGTGKTLIARQIGKMLNarePKVINGPEVLNKYVGQSEENIRKL 401
                 6789*************977777666999999999999998666665544 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.05
      AAA_33   2 vllvGlpGsGKstlaerllkklg 24 
                 vll G++ sGK+ la r++    
  KKY17735.1 634 VLLWGPASSGKTALAARIAIDSE 656
                 6889************9875554 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.013       6.6       3      27 ..     352     376 ..     350     384 .. 0.85
   2 ?    5.4   0.0      0.03        16       3      21 ..     634     652 ..     633     656 .. 0.89
   3 ?    3.1   0.0      0.15        78      84     139 ..     694     750 ..     670     772 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.013
                 EEEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaeg 27 
                 ++l G++G GKT  ++++   + ++
  KKY17735.1 352 ILLYGPPGTGKTLIARQIGKMLNAR 376
                 7899*************98777665 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.03
                 EEEEC-TTTCHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqkla 21 
                 v+l G+a sGKT+L++++a
  KKY17735.1 634 VLLWGPASSGKTALAARIA 652
                 6889**************8 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.15
                 EEEEE-STT-SS-TCH...........HHHHHCTTTTT--EEEEEEECCCHHHHCTTS CS
       NACHT  84 LlilDglDelvtdlgq..kekqpvrtlLselirkkllpeasllltvrpralrdleeql 139
                 +++lD ++++v+  +      + v + L  l+rk+ +++ +ll++++++ ++ l +ql
  KKY17735.1 694 VIVLDNIERIVDWVPIgpRFSNTVLQTLMVLLRKQPPKGRRLLVIATSNERNVL-QQL 750
                 4778888888875555554556677777799*************9999988444.444 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00055      0.29       2      38 ..     352     394 ..     351     413 .. 0.78
   2 ?    5.7   0.0     0.029        16       2      27 ..     634     660 ..     633     683 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00055
      AAA_28   2 ivitGgestGKTtlleaLa....argypvv..pEaareileek 38 
                 i + G+++tGKT +++++     ar+ +v+  pE+  +++ + 
  KKY17735.1 352 ILLYGPPGTGKTLIARQIGkmlnAREPKVIngPEVLNKYVGQS 394
                 7899***********8887444466999999999999998554 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.029
      AAA_28   2 ivitGgestGKTtlleaLaar.gypvv 27 
                 + + G+ s+GKT l++++a + ++p v
  KKY17735.1 634 VLLWGPASSGKTALAARIAIDsEFPFV 660
                 6789*************9944355544 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00035      0.19      16      47 ..     346     380 ..     329     400 .. 0.76
   2 ?    4.3   0.0      0.07        37      21      51 ..     629     665 ..     606     695 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00035
                 HCHTEEEEEEESTTSSHHHHHHHHHHHTT--...- CS
        TsaE  16 kalgdvilLeGdLGaGKTtlvrglakalgve...e 47 
                  +  + ilL+G+ G+GKT ++r++ k l+ +    
  KKY17735.1 346 IQHVKGILLYGPPGTGKTLIARQIGKMLNARepkV 380
                 322445********************998865533 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.07
                 E....EEEEESTTSSHHHHHHHHHHHTT--..----T CS
        TsaE  21 v....ilLeGdLGaGKTtlvrglakalgve..evkSP 51 
                 +    +lL G+  +GKT+l+  +a   ++   +  SP
  KKY17735.1 629 TplfsVLLWGPASSGKTALAARIAIDSEFPfvKLVSP 665
                 144559**************99987776655566666 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00019     0.099      44      73 ..     346     375 ..     332     382 .. 0.84
   2 ?    2.0   0.0      0.29   1.5e+02      50      70 ..     634     654 ..     632     702 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00019
   IstB_IS21  44 iekkenivllGpsGvGKshlaialgveavr 73 
                 i++ ++i+l Gp+G+GK+ +a  +g+   +
  KKY17735.1 346 IQHVKGILLYGPPGTGKTLIARQIGKMLNA 375
                 567789****************99987655 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.29
   IstB_IS21  50 ivllGpsGvGKshlaialgve 70 
                 ++l Gp+  GK+ la+ ++ +
  KKY17735.1 634 VLLWGPASSGKTALAARIAID 654
                 7899***********987654 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0039         2      21      40 ..     351     370 ..     341     386 .. 0.81
   2 ?    6.3   0.0     0.011       5.9      22      42 ..     634     654 ..     614     697 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0039
                 EEEEE--TTSSTTHHHHHHH CS
        PhoH  21 ivfaiGpaGtGKtylavala 40 
                  +   Gp GtGKt++a +++
  KKY17735.1 351 GILLYGPPGTGKTLIARQIG 370
                 56789***********9887 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.011
                 EEEE--TTSSTTHHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalave 42 
                 v   Gpa +GKt la  +a++
  KKY17735.1 634 VLLWGPASSGKTALAARIAID 654
                 6788**************997 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.3   5.4e-05     0.028       4      38 ..     315     368 ..     313     373 .. 0.82
   2 ?   -1.3   0.0       2.1   1.1e+03      22      41 ..     634     653 ..     632     659 .. 0.86
   3 ?   -3.4   0.0       9.1   4.8e+03      99     131 ..     672     703 ..     655     705 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.4e-05
      ATPase   4 gIeglDeilk...................gGipegrvvlitGepGtGKtifalq 38 
                 gI glD+ +                     Gi + + +l++G pGtGKt++a q
  KKY17735.1 315 GIGGLDTEFGtifrrafasrifppglvekLGIQHVKGILLYGPPGTGKTLIARQ 368
                 677777777557777777777777777778*********************987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.1
      ATPase  22 vlitGepGtGKtifalqFli 41 
                 vl+ G + +GKt +a++ +i
  KKY17735.1 634 VLLWGPASSGKTALAARIAI 653
                 8999**********998766 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 9.1
      ATPase  99 kdkedleelieelaeaikeikakrvviDsitgl 131
                 ++ +++++l++ +++a k+ + + +v+D+i+ +
  KKY17735.1 672 NEAAKVQALSKAFMDAYKS-EMSVIVLDNIERI 703
                 5567888888888888764.7789999999865 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0013      0.66      24      49 ..     351     376 ..     341     385 .. 0.80
   2 ?    3.7   0.0     0.082        43      12      46 ..     620     655 ..     610     689 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0013
                      -EEEECSTTSSHHHHHHHHHHHSTTT CS
  Sigma54_activat  24 svlitGesGtGKellaraiheaskrk 49 
                       +l+ G  GtGK+l+ar+i +  + +
       KKY17735.1 351 GILLYGPPGTGKTLIARQIGKMLNAR 376
                      69****************98766554 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.082
                      HHHHHHHCTSS.S-EEEECSTTSSHHHHHHHHHHHS CS
  Sigma54_activat  12 leqikkvaktd.lsvlitGesGtGKellaraiheas 46 
                      ++q+kk  +t+  svl+ G   +GK+ la  i   s
       KKY17735.1 620 VNQVKKPDSTPlFSVLLWGPASSGKTALAARIAIDS 655
                      56666666666689***************9986644 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1    0.0027       1.4      22      42 ..     351     371 ..     339     378 .. 0.79
   2 ?    4.1   0.0     0.044        23      16      43 ..     627     654 ..     618     663 .. 0.82
   3 ?   -1.9   0.0       2.8   1.5e+03      88     127 ..     676     715 ..     656     724 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0027
                 EEEEEESTTSSHHHHHHHHCC CS
      NB-ARC  22 vvalvGmgGvGKttlakqiln 42 
                  + l+G +G GKt +a+qi +
  KKY17735.1 351 GILLYGPPGTGKTLIARQIGK 371
                 4789**************976 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.044
                 TTSCSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  16 delqslvvalvGmgGvGKttlakqilnk 43 
                 d+  ++ v l G + +GKt la+ i  +
  KKY17735.1 627 DSTPLFSVLLWGPASSGKTALAARIAID 654
                 555678899**************99876 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.8
                 STTSHHHHHHHHCCCTTEEEEEEEE-SHHHH.....HHHH CS
      NB-ARC  88 eveslkrklvrlLltkrfllvlDDVweeedwdkigvvlpa 127
                 +v+ l +  + + ++  +++vlD +   +dw  ig  +++
  KKY17735.1 676 KVQALSKAFMDAYKSEMSVIVLDNIERIVDWVPIGPRFSN 715
                 4444666777777888999******999999777766665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   8.6e-05     0.045       7      98 ..     345     461 ..     343     477 .. 0.76
   2 ?   -1.5   0.0       6.1   3.2e+03      14      32 ..     634     652 ..     633     656 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.6e-05
                 EEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.......................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................... RF
    ABC_tran   7 klkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.......................... 79 
                  +++ + + + G+ G+GK+ +++ + ++l+  e ++ ++g ++ ++   +++++i+ l+ +++  ++ +  e+                          
  KKY17735.1 345 GIQHVKGILLYGPPGTGKTLIARQIGKMLNAREPKV-INGPEVLNKYVGQSEENIRKLFADAEKEYKEKGDESglhiiifdeldavckqrgsgagggtg 442
                 5667777899**************************.********9**************988777776655577777777666655555555555444 PP

                 HHHTCHHHHHHHSTTGGTT CS
                 xxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdeeiekalsklglkelk 98 
                   d+ ++++lskl+ ++  
  KKY17735.1 443 VGDSVVNQLLSKLDGVDQL 461
                 4444466666666666555 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 6.1
                 EEEEESTTSSHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlklla 32 
                 v + G+  +GK+ L++ +a
  KKY17735.1 634 VLLWGPASSGKTALAARIA 652
                 5689**********98775 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0082       4.3      28      60 ..     342     374 ..     338     435 .. 0.84
   2 ?    4.9   0.0     0.029        15      27      56 ..     623     652 ..     609     669 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0082
        TniB  28 eypkrkrmpnlllvGdsnnGKtmivekFarlhp 60 
                 e+   + ++ +ll+G++ +GKt i+++  ++ +
  KKY17735.1 342 EKLGIQHVKGILLYGPPGTGKTLIARQIGKMLN 374
                 5566678899**************998776655 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.029
        TniB  27 leypkrkrmpnlllvGdsnnGKtmivekFa 56 
                 +++p+++   ++ll+G+   GKt+++ + a
  KKY17735.1 623 VKKPDSTPLFSVLLWGPASSGKTALAARIA 652
                 6788888999**************998876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0039       2.1      36      52 ..     352     368 ..     340     419 .. 0.91
   2 ?    3.1   0.1      0.12        63      36      55 ..     634     653 ..     631     655 .. 0.89
   3 ?   -1.8   0.0       3.7   1.9e+03     134     154 ..     685     703 ..     650     705 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0039
      AAA_25  36 allaGapgtGKttlald 52 
                 +ll+G+pgtGKt +a +
  KKY17735.1 352 ILLYGPPGTGKTLIARQ 368
                 69***********9976 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.12
      AAA_25  36 allaGapgtGKttlaldlal 55 
                 +ll+G+  +GKt+la  +a+
  KKY17735.1 634 VLLWGPASSGKTALAARIAI 653
                 79*************98886 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 3.7
      AAA_25 134 eaaieevegvrlvviDplsra 154
                 ++a ++  +  ++v+D++ r+
  KKY17735.1 685 MDAYKS--EMSVIVLDNIERI 703
                 333333..399******9986 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0013      0.67      12      38 ..     351     377 ..     345     407 .. 0.86
   2 ?   -1.8   0.0       6.5   3.5e+03      18      53 ..     438     472 ..     434     544 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0013
      AAA_19  12 vllvtaGpGtGKTrvlkhivallvelg 38 
                  +l+ ++pGtGKT + ++i ++l++++
  KKY17735.1 351 GILLYGPPGTGKTLIARQIGKMLNARE 377
                 5899***********999999887765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 6.5
      AAA_19  18 GpGtGKTr.vlkhivallvelggvkpeeillvaftgr 53 
                 G GtG    v+++ ++ l  + +  +++ill+ +t+r
  KKY17735.1 438 GGGTGVGDsVVNQLLSKLDGVDQ--LNNILLIGMTNR 472
                 45555443034444444444443..478888888887 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.58     3e+02       5      23 ..     353     371 ..     349     376 .. 0.86
   2 ?    8.5   0.0    0.0022       1.2       5      32 ..     635     662 ..     633     664 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.58
         IPT   5 lifGatttGKtaeaiklak 23 
                 l++G+ +tGKt  a ++ k
  KKY17735.1 353 LLYGPPGTGKTLIARQIGK 371
                 89*********99988876 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0022
         IPT   5 lifGatttGKtaeaiklaketgapvivl 32 
                 l++G+ ++GKta a ++a +  +p + l
  KKY17735.1 635 LLWGPASSGKTALAARIAIDSEFPFVKL 662
                 89*****************999998865 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00077      0.41      22      50 ..     353     381 ..     341     427 .. 0.88
   2 ?   -2.5   0.0       6.7   3.5e+03      22      37 ..     635     650 ..     632     655 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00077
      AAA_30  22 vltGpAGtGKttalkalreaweaaggrvi 50 
                 +l Gp+GtGKt + +++ ++++a++ +vi
  KKY17735.1 353 LLYGPPGTGKTLIARQIGKMLNAREPKVI 381
                 688*****************999987876 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.7
      AAA_30  22 vltGpAGtGKttalka 37 
                 +l GpA +GKt + + 
  KKY17735.1 635 LLWGPASSGKTALAAR 650
                 678********98765 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0011      0.56      20      44 ..     352     376 ..     343     413 .. 0.72
   2 ?   -2.7   0.0       7.6     4e+03      32      64 ..     715     742 ..     706     744 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0011
      AAA_11  20 tliqGPPGtgKTktivellsqllsr 44 
                  l+ GPPGtgKT    ++ ++l+ r
  KKY17735.1 352 ILLYGPPGTGKTLIARQIGKMLNAR 376
                 5899********8888888888533 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 7.6
      AAA_11  32 ktivellsqllsrrkseeeksakpriLvCapSN 64 
                  t+++ l++l      +++  +++r+Lv a SN
  KKY17735.1 715 NTVLQTLMVL-----LRKQPPKGRRLLVIATSN 742
                 6778888888.....45678999*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (836 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.54
# Mc/sec: 4697.85
//
Query:       KKY17736.1  [L=1745]
Description: putative sensor histidine kinase response [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-21   77.2   0.3    8.1e-21   74.6   0.0    2.5  3  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    5.7e-21   74.8   0.2    2.1e-18   66.5   0.0    2.5  2  Response_reg  Response regulator receiver domain
    2.3e-17   62.7   0.0      6e-17   61.4   0.0    1.8  1  HisKA         His Kinase A (phospho-acceptor) domain
    3.1e-10   40.2   0.5      4e-05   23.8   0.0    4.2  4  PAS_3         PAS fold
    5.8e-05   23.3   0.0      0.001   19.3   0.0    2.6  2  PAS_4         PAS fold
    0.00018   21.5   0.0       0.34   10.9   0.0    3.4  3  PAS           PAS fold
  ------ inclusion threshold ------
       0.11   12.3   1.2        6.4    6.7   0.6    2.8  2  GLTT          GLTT repeat (6 copies)


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.2   5.5e+03      10      24 ..    1110    1123 ..    1106    1148 .. 0.63
   2 !   74.6   0.0   3.2e-24   8.1e-21       1     110 [.    1173    1290 ..    1173    1292 .. 0.89
   3 ?   -2.3   0.0       2.4   6.2e+03      45      82 ..    1576    1610 ..    1569    1633 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.2
                  HHHHHHHHHHHHSTT CS
   HATPase_c   10 isnlvdNavkfatka 24  
                  +++lvdN ++  tk 
  KKY17736.1 1110 LRELVDNILDV-TKV 1123
                  57888888887.333 PP

  == domain 2  score: 74.6 bits;  conditional E-value: 3.2e-24
                  EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEE........TEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHT CS
   HATPase_c    1 gdekrLrqiisnlvdNavkfatkageieveikase........ddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelm 88  
                  gd  r+rq+++nl++Navkf t++ge+  ++ +++          l   v+D+G+G +++dl++lf+ f q +++ +r+  g+GlGl ++k+lve++
  KKY17736.1 1173 GDAFRIRQVLINLIGNAVKF-TDEGEVYAHCYVKKsaevglyeTMLACDVRDTGKGFSEADLQRLFKQFGQiQGAHSRQEAGSGLGLFLSKQLVEMH 1268
                  67889***************.989988666666333345565589999************************************************* PP

                  TTEEEEEEETTTEEEEEEEEES CS
   HATPase_c   89 gGeiwvesepgrGttftftlpl 110 
                  gG ++ + ++g+G  ftf+++ 
  KKY17736.1 1269 GGFMEASGKEGEGALFTFCVKV 1290
                  ******************9985 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.4
                  SSSSSTTHHHTGTCSTTCHHCSTCHTS.TSSSHHHHHHH CS
   HATPase_c   45 nGiGipkedlkklfekfsqddstkrgg.ggtGlGlsivk 82  
                    + i++++ +  f++f q   + r++ gg+G+   +v+
  KKY17736.1 1576 RNRDISQAKTE-DFKNFAQ---YVRETiGGRGFRILVVE 1610
                  55566666666.6778888...66665599999888884 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0054        14      11     107 ..    1455    1560 ..    1445    1565 .. 0.69
   2 !   66.5   0.0   8.4e-22   2.1e-18       1     109 [.    1606    1721 ..    1606    1724 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0054
                    HHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEE.EESSCSSSEHHH.HHHHHHHCT..TTSEEEEEESSTS....HHHHHHHHHCT.ESE CS
  Response_reg   11 rellrqlleeegyeevaeaedgkealellkeekvdlil.lDinmpgmdGle.llkeireed..pelpviiltahse....eedavealkag.add 96  
                     + ++q++ +e   +v+++++ +e lel+k+ ++ +++ + +++p+ + ++ l+++i + +   +++ ii+t h +    +e+ +  l++g ++ 
    KKY17736.1 1455 KQHIEQVVPHEIAANVTTMASTEEWLELYKTPSPPVVThVILDLPDSNTINnLMQHISTMKthVTPELIIITDHYQkraiMEQQTSTLDYGlIVS 1549
                    4455555667888899*************99995554313345788777742677786666445789*****77762222334445678885579 PP

                    EEESSG-HHHH CS
  Response_reg   97 flsKpfdpeeL 107 
                    f+sKp++p+  
    KKY17736.1 1550 FISKPVKPSVF 1560
                    9****998765 PP

  == domain 2  score: 66.5 bits;  conditional E-value: 8.4e-22
                    EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH...ESEEEEESSCSSSEHHHHHHHHHHCT.....TTSEEEEEESSTSHHHHH CS
  Response_reg    1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek...vdlillDinmpgmdGlellkeireed.....pelpviiltahseeedav 87  
                    +l+v+D++++++++ ++l++ ++ e ++a +g e+ +++ ++    + li++Di+mp  +G+e+++e+r+ +     + +p+++l+a++  e++ 
    KKY17736.1 1606 ILVVEDSEVNQKVIMRYLQRVHL-EAETAMNGLECTQMVLSKGldyYSLIICDIQMPLKNGYEVCQELRKWEqesnrDPMPIMALSANAMPEEKA 1699
                    89*********************.***************666656899********************99985555445**************** PP

                    HHHHCTESEEEESSG-HHHHHH CS
  Response_reg   88 ealkagaddflsKpfdpeeLlk 109 
                     a ++g  d+l+Kp++ + L +
    KKY17736.1 1700 TAARVGFTDYLTKPVEYNSLGQ 1721
                    ***************9988866 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   2.4e-20     6e-17       2      67 .]    1062    1126 ..    1061    1126 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 2.4e-20
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA    2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrieag 67  
                  ++rf+a+++HE+rtPL++ilgn+  L+++ +l+ ++++ +++i+++++ l++lv+++Ld ++ eag
  KKY17736.1 1062 KTRFFANMSHEIRTPLNGILGNIPWLMDS-ELDNDQRRTIDVIQNSSNNLRELVDNILDVTKVEAG 1126
                  79************************996.9*******************************9987 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.3   3.2e+03      61      77 ..     741     757 ..     738     765 .. 0.83
   2 !   23.8   0.0   1.6e-08     4e-05      28      87 ..     769     830 ..     758     832 .. 0.85
   3 ?    3.5   0.0     0.033        85       2      39 ..     879     914 ..     878     928 .. 0.91
   4 !    7.6   0.0    0.0018       4.6      49      73 ..     992    1017 ..     981    1021 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.3
       PAS_3  61 kdGeyrwveararvird 77 
                 k Ge  w  +r +++r+
  KKY17736.1 741 KTGELLWTNSRFQAFRN 757
                 89************965 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 1.6e-08
       PAS_3  28 dlvhpeDrervrealqealkkgepyegeyRirr..kdGeyrwveararvirdengkpvrvig 87 
                   vhp Dre +++ + ++l++g +++ ++R++r   d +yrw+  ra+ + ++ g+++++ig
  KKY17736.1 769 RNVHPADREALEKGWSQVLNSGNQFTMHIRVKRfnNDADYRWFIFRASTLLSQTGQILYFIG 830
                 559********************998886665511799**********************99 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.033
       PAS_3   2 iyvserveeilGyspeellgkveswldlvhpeDrervr 39 
                 ++ ++++  + G s e+ l+    ++ +vh +D+ ++r
  KKY17736.1 879 VSTNDQWHVYSGQSIEDALDL--GFARHVHRDDLTKCR 914
                 67899****************..**********99876 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0018
       PAS_3   49 ge.pyegeyRirrkdGeyrwvearar 73  
                  g+ +y++e+R++ k+G+ rw+  r +
  KKY17736.1  992 GRpSYSIEIRLKSKSGDFRWFLVRLV 1017
                  5568****************988765 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   4.1e-07     0.001      13     109 ..     741     839 ..     728     840 .. 0.88
   2 ?    0.9   0.0      0.21   5.3e+02      65     109 ..     995    1042 ..     989    1043 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 4.1e-07
       PAS_4  13 pdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelll...pgeerhyelrllPlrdesGevigvlvisrDiTer 108
                 + g  l++N ++++   +   e +  +++ ++p+ d+++le  + +vl ++   ++++ +++   + + r++ +r++ l+   G+++ +++ + D+ e+
  KKY17736.1 741 KTGELLWTNSRFQAFRNHISGERVKDPWRNVHPA-DREALEKGWSQVLNSGNQFTMHIRVKRfnnDADYRWFIFRASTLLSQTGQILYFIGSFMDVHEQ 838
                 6788899999999977777777777788888888.*****************************99999***************************998 PP

       PAS_4 109 r 109
                 +
  KKY17736.1 839 H 839
                 7 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.21
       PAS_4   65 piefleelll.pgeerhyelrl..lPlrdesGevigvlvisrDiTerr 109 
                  +++ ++ l+  +g+ r++++rl  +  +  sG+   ++++++Di +r+
  KKY17736.1  995 SYSIEIRLKSkSGDFRWFLVRLvkVESLLLSGGRASWYGTCTDINDRK 1042
                  344444444499999*******553333468999**********9997 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00013      0.34      50     113 .]     771     835 ..     756     835 .. 0.79
   2 !    6.1   0.0    0.0043        11       2     101 ..     857     954 ..     856     961 .. 0.90
   3 ?   -1.1   0.0      0.72   1.8e+03      68      96 ..     991    1019 ..     986    1022 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00013
                 BSTTHHHHHHHHHHHHHHHTT-ECCCCEEEEC..TTSSEEEEEEEEEEEEETTEEEEEEEEEEEES CS
         PAS  50 iheeddaelaelleqlleqgeesrageisfkl..rdgrpihlevraspvrdaggeilgflgvlrdi 113
                 +h+ d++ l +  +q+l++g+++ ++ i++k+   d  ++++  ras++++  g+il+f+g ++d+
  KKY17736.1 771 VHPADREALEKGWSQVLNSGNQF-TMHIRVKRfnNDADYRWFIFRASTLLSQTGQILYFIGSFMDV 835
                 66666655555555555555555.556666667*******************************97 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0043
                 HHHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEECTTSSEEEEEEEEEEEEETT CS
         PAS   2 dlraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfklrdgrpihlevraspvrdag 100
                 ++ra+ +s+p   f   ++  i+ +N+ +    G s e++l   + + +h +d   ++ ++   + ++++  +++ ++ ++d++   +++ as  ++ +
  KKY17736.1 857 KYRALANSIPQILFEAVANQGIVSTNDQWHVYSGQSIEDALDLGFARHVHRDDL--TKCRIFLPAVTASHYAHQDFTLSFVDQSAHDADTSASESTSSS 953
                 79************************************************9998..9999999999999999999999999999999998888888776 PP

                 E CS
         PAS 101 g 101
                  
  KKY17736.1 954 A 954
                 5 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.72
                  HTT-ECCCCEEEECTTSSEEEEEEEEEEE CS
         PAS   68 qgeesrageisfklrdgrpihlevraspv 96  
                  +g++s + ei++k + g +++++vr ++v
  KKY17736.1  991 SGRPSYSIEIRLKSKSGDFRWFLVRLVKV 1019
                  677888999999*9**********99886 PP

>> GLTT  GLTT repeat (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.03        78       6      23 ..    1313    1330 ..    1312    1332 .. 0.89
   2 ?    6.7   0.6    0.0025       6.4       7      19 ..    1344    1356 ..    1344    1357 .. 0.46

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.03
        GLTT    6 GLvslGLvtmGLvtlGLv 23  
                  G+++++ +++G  t+G++
  KKY17736.1 1313 GISEISPPSPGFATPGIP 1330
                  8999999*********97 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0025
        GLTT    7 LvslGLvtmGLvt 19  
                  Lvs+GL+++GL +
  KKY17736.1 1344 LVSPGLSSPGLLS 1356
                  4555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1745 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1204  (0.0671538); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.21u 0.31s 00:00:01.52 Elapsed: 00:00:00.54
# Mc/sec: 9649.35
//
Query:       KKY17737.1  [L=184]
Description: hypothetical protein UCRPC4_g05370 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-25   86.8   0.8    1.1e-24   86.4   0.8    1.2  1  KxDL      Uncharacterized conserved protein
  ------ inclusion threshold ------
      0.036   14.4   1.2        1.1    9.7   0.1    2.3  2  DUF11     Domain of unknown function DUF11
       0.18   11.1   4.8       0.23   10.8   4.8    1.1  1  DUF4407   Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.8   1.9e-28   1.1e-24       1      86 []      90     175 ..      90     175 .. 0.99

  Alignments for each domain:
  == domain 1  score: 86.4 bits;  conditional E-value: 1.9e-28
        KxDL   1 rltsavdsedldeilalQaqtsgrlnkknreLlelnalsqerlaklrarfkqgtkllkevkkdLesifkkirslkaklakkyPeeY 86 
                 r++ a+d++++d+ la Qaq sg+ln+k+reLlel+a +q+r+++ r r++ g +++ke+++dL++i++++ + ka++++kyP++Y
  KKY17737.1  90 RMNRAFDPITMDKGLARQAQSSGQLNAKQRELLELQAAAQRRMKSSRVRYAAGLQAAKETRSDLDYIRSQVPATKAQAERKYPDAY 175
                 6999*********************************************************************************9 PP

>> DUF11  Domain of unknown function DUF11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.3    0.0033        20      40      71 ..      41      77 ..      17      80 .. 0.74
   2 ?    9.7   0.1   0.00018       1.1      27      85 ..      75     135 ..      73     141 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0033
       DUF11 40 Paglayvsvsas....qgtasaltsv......gsLeagesat 71
                P+g  y s++++           +s+      g+Le+++sa 
  KKY17737.1 41 PEGSDYASSRSGpsysA-----GSSTyagsssGDLEPSSSAS 77
                99999999999955442.....4444444557******9986 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00018
       DUF11  27 pasangvvvtDtlPaglayvsvsas..qgtasaltsvgsLeagesatlsftvrvtrtaasg 85 
                  as +gv v Dtl   ++      +  +g a+ ++s+g+L+a ++  l++++ ++r+ +s 
  KKY17737.1  75 SASYSGVDVLDTLSDRMNRAFDPITmdKGLARQAQSSGQLNAKQRELLELQAAAQRRMKSS 135
                 567789*******987775544444559999999999****************99988765 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.8   3.9e-05      0.23     134     220 ..      99     179 ..      82     183 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.9e-05
     DUF4407 134 elaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalraela 220
                 ++++  a++a+ +++++a++++l +l+a+aq+ ++    ++    a   +aake +++ld ++ ++ + ka+  a+ + +++ a++ 
  KKY17737.1  99 TMDKGLARQAQSSGQLNAKQRELLELQAAAQRRMKS---SRVR-YAAGLQAAKETRSDLDYIRSQVPATKAQ--AERKYPDAYAQAR 179
                 5677889999*********************99996...4433.3444699*********************..9999999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.54
# Mc/sec: 1028.11
//
Query:       KKY17738.1  [L=232]
Description: hypothetical protein UCRPC4_g05371 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.63   10.3  14.6      0.071   13.3   7.0    3.1  2  MPLKIP      M-phase-specific PLK1-interacting protein
        3.8    5.4  11.1        4.6    5.1  11.1    1.1  1  Dicty_REP   Dictyostelium (Slime Mold) REP protein
        3.9    6.1   7.4        4.6    5.9   7.4    1.2  1  Presenilin  Presenilin


Domain annotation for each model (and alignments):
>> MPLKIP  M-phase-specific PLK1-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.8      0.45   2.7e+03      41      54 ..      87     100 ..      79     106 .. 0.63
   2 ?   13.3   7.0   1.2e-05     0.071      16      45 ..     161     231 ..     141     232 .] 0.69

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.45
      MPLKIP  41 dkdqsssnsqtest 54 
                 ++d++  nsq++st
  KKY17738.1  87 TTDSNAHNSQNTST 100
                 34455555666655 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.2e-05
      MPLKIP  16 q........................................dvesYfkpSMLE.DPWagLepksvtdkdqs 45 
                                                              YfkpS+ + DPWa L +k  ++++++
  KKY17738.1 161 NnrrgnhrdnqynepwvapsgrvfspqelrdyaqgkiknekGDTVYFKPSFIDpDPWAALRQKKAEEENTT 231
                 044444455555666777777777777777777777777664456*******99**********9999875 PP

>> Dicty_REP  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  11.1   0.00076       4.6     235     339 ..      75     177 ..      56     204 .. 0.61

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.00076
   Dicty_REP 235 esiesentqrensqpskeknkttttttttttttsqartrkrkaidddklsenqakekkknskksdddpqsdfskkssrksgslkdvrvdnisdselddd 333
                  +  s+  +  ++ +s+ +n++ t+ttt+t t+++++    + ++ + +  +   + +   +++ ++   + +++ +r++++ ++ r+++   ++ d++
  KKY17738.1  75 SQAASTASTASSTTDSNAHNSQNTSTTTITSTVNHPTNINAH-TSANLIPASILSTSNTLPPRPPPQNHPQQQHNRNRNNNNRNNQRNNRRG-NHRDNQ 171
                 445566667777788888899999999999999888877766.4444444433333333344444444456667777778888888887777.555555 PP

   Dicty_REP 334 vnesis 339
                  ne   
  KKY17738.1 172 YNEPWV 177
                 555443 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   7.4   0.00077       4.6     217     302 ..      76     171 ..      36     208 .. 0.47

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.00077
  Presenilin 217 satvvvlaaeekkaevaeseeeeeaekkkeeasesskeeeseeesseksaqsse.......................................seeese 276
                 +a+ ++++a+++++++a+++++++                             +                                       +++ ++
  KKY17738.1  76 QAASTASTASSTTDSNAHNSQNTS-----------------------------TttitstvnhptninahtsanlipasilstsntlpprpppQNHPQQ 145
                 222222222211111111111111.............................0111122333344445555667777666555555555444333333 PP

  Presenilin 277 eesseaessaeesseekeseessess 302
                 +++++ +++++++++++++ ++++++
  KKY17738.1 146 QHNRNRNNNNRNNQRNNRRGNHRDNQ 171
                 33333333322222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1484  (0.0827709); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.53
# Mc/sec: 1309.74
//
Query:       KKY17739.1  [L=638]
Description: putative endosomal integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.1e-206  686.6   0.6   2.5e-206  686.4   0.6    1.0  1  EMP70     Endomembrane protein 70


Domain annotation for each model (and alignments):
>> EMP70  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  686.4   0.6  1.4e-210  2.5e-206       2     518 ..      67     607 ..      66     608 .. 0.94

  Alignments for each domain:
  == domain 1  score: 686.4 bits;  conditional E-value: 1.4e-210
       EMP70   2 ydYyd.llpfCkpeeekkkesesLgevLrGdrienspyelkfgkdeeckvlCt.kkltkeelkklkelIkngYvvnwlvDnLPva........tsfvsa 90 
                 ++Yy+  l+fC+p+   k+ +esLg++++Gdri++sp+el +gk+e+ck+lC+ kk++++++k+++++I ++Y +nwl+D+LP+a         + +s 
  KKY17739.1  67 FEYYHaALHFCRPAGGPKDVRESLGSIIFGDRIRTSPFELLMGKNETCKSLCEeKKFDQRSAKFVNRRIWENYNLNWLIDGLPAAqlnedpqtGELFSS 165
                 79**99*******855777888******************************88*******************************77777666333447 PP

       EMP70  91 aGfplGfvdkeeekekyylnnhldfviryhkakeee.kkrivgfevepksvkde.e.e...eeCpkea.e.leleeekkeeeteipftYsVkwresedv 181
                 +GfplG +++   ++++ lnnh+d++i+yh+a  +  ++r+vg+ v+p+s+k++ + +    eCp +  e l l+e   + et++++tYsV+wr s+ +
  KKY17739.1 166 PGFPLGRINE---NRQVELNNHYDIIIDYHAAGIRGdQYRVVGVLVQPQSYKNSkNmDdgkAECPGDGsEaLVLDE---NGETHVTWTYSVYWRPSK-T 257
                 9*******96...689**************987655789*************99445156789**55545577777...699**************8.* PP

       EMP70 182 ewasRwdlylesvedskihwfsiinslvivlllslivavillrtlrkdiarynee.............eeee.aqeesgWKlvhgdVfrpPknsllLsv 266
                  wa+Rwd+yl +v d+kihwfs+ins+++v++l+++v+ il+r+lrkdiaryn+                e+ +qe+sgWKlvhgdVfr+P+++llLs+
  KKY17739.1 258 AWATRWDKYL-HVFDPKIHWFSLINSTIFVVFLVGMVSAILIRALRKDIARYNRLdsinlddlsgtsaVVEDgVQEDSGWKLVHGDVFRAPRYPLLLSI 355
                 **********.899****************************************99**99999988774445699************************ PP

       EMP70 267 lvGsGvqlllmalvtlllallgflspsnrgslltvalllyvllgliaGYvsarlyktfggekwkkntlltalllpgllflvffllnlilwakessgalp 365
                 ++GsGvql++m+ +t+++al+gflspsnrg l+tv+llly+l+g+i+GYvs+r+ykt+gge+wk n+ lt++++pg++f +ff++nl++wak+ssga+p
  KKY17739.1 356 FLGSGVQLFVMTGITVAFALFGFLSPSNRGFLATVILLLYTLFGFIGGYVSSRTYKTLGGERWKLNMALTPVVVPGIVFGIFFFMNLFVWAKGSSGAVP 454
                 *************************************************************************************************** PP

       EMP70 366 fgtlvlllllwflisvPlvliGsllgfkkkaiehpvrtnqiprqipkqpwylkpllsvllgGilpFgaifielyfilsslwlekiYylfgfLflvflll 464
                 f+t+++++++wf+isvP ++ Gs++gfk++aie p++tnqiprqip+ ++ l+pl+s+ll+GilpFgaif+elyfi++slw +kiYy+fgfLf+++ l+
  KKY17739.1 455 FTTMLAIVVIWFIISVPTSVTGSWIGFKHPAIETPTKTNQIPRQIPPPAMSLRPLPSLLLTGILPFGAIFVELYFIMTSLWTSKIYYMFGFLFVCYGLM 553
                 *****************************999***************99************************************************** PP

       EMP70 465 iittaevtilltYfqLcaedyrWwWrSflvggssalYvflysiyYyftklkisg 518
                 iit+a++till+Yf LcaedyrW+Wr+f+ +g+++ Yvfl ++ +++t++++ g
  KKY17739.1 554 IITCACTTILLVYFLLCAEDYRWQWRAFIGAGMTGGYVFLNALGFWATRVSFGG 607
                 *************************************************99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       856  (0.0477439); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.53
# Mc/sec: 3634.21
//
Query:       KKY17740.1  [L=190]
Description: putative calcium sensor (ncs-1) [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-26   89.6  12.9    3.4e-08   32.5   0.1    5.0  5  EF-hand_1       EF hand
    9.1e-26   87.6   5.2    2.2e-06   27.1   0.1    5.2  5  EF-hand_6       EF-hand domain
    2.6e-24   85.5   8.0    9.4e-16   58.0   0.9    3.0  3  EF-hand_7       EF-hand domain pair
    5.3e-17   60.5  13.0    4.7e-05   22.7   0.1    4.6  5  EF-hand_5       EF hand
    7.8e-14   51.3  13.5    2.4e-05   24.1   0.6    4.1  4  EF-hand_8       EF-hand domain pair
    1.3e-08   34.7   6.3     0.0027   17.6   0.2    3.8  4  EF-hand_4       Cytoskeletal-regulatory complex EF hand
    0.00014   22.1   1.0     0.0077   16.5   0.1    3.1  3  EF-hand_9       EF-hand domain
     0.0011   19.2   3.1        1.3    9.4   0.7    3.1  2  SPARC_Ca_bdg    Secreted protein acidic and rich in cysteine 
  ------ inclusion threshold ------
      0.012   15.4   4.4       0.51   10.3   0.1    3.8  5  EF-hand_10      EF hand
      0.021   13.7   0.4        2.7    6.8   0.2    2.1  2  DUF1679         Protein of unknown function (DUF1679)
      0.065   13.7   0.0        2.7    8.5   0.0    2.6  1  Staphylokinase  Staphylokinase/Streptokinase family
      0.087   12.9   0.3          6    7.0   0.0    2.8  3  Phage_XkdX      Phage uncharacterised protein (Phage_XkdX)
       0.16   12.2   0.0         19    5.6   0.0    3.3  4  PMBR            Pseudomurein-binding repeat
       0.34   11.3   3.1         24    5.3   0.0    3.5  3  EF-hand_14      EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.49   6.3e+02      10      27 ..      15      32 ..      12      34 .. 0.81
   2 !    6.5   0.0    0.0051       6.6      14      27 ..      40      53 ..      40      55 .. 0.88
   3 !   27.4   0.2   1.1e-09   1.4e-06       3      27 ..      66      90 ..      64      92 .. 0.90
   4 !   32.5   0.1   2.6e-11   3.4e-08       2      27 ..     101     126 ..     100     128 .. 0.92
   5 !   28.0   0.7     7e-10     9e-07       2      25 ..     149     172 ..     148     175 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.49
                TTTSSSEEEHHHHHHHHH CS
   EF-hand_1 10 DkDgdGkIdfeEfkellk 27
                D  ++ + d++E++++ k
  KKY17740.1 15 DLQKSTHFDKKELQQWYK 32
                67788888999**99876 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0051
                SSEEEHHHHHHHHH CS
   EF-hand_1 14 dGkIdfeEfkellk 27
                +G++++eEf+++ +
  KKY17740.1 40 SGTLTKEEFQKIYR 53
                7*********9976 PP

  == domain 3  score: 27.4 bits;  conditional E-value: 1.1e-09
                HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkellk 27
                + +F++fD D++G+Idf Ef+ +l+
  KKY17740.1 66 DYVFKVFDADKSGTIDFREFICALS 90
                679*****************99885 PP

  == domain 4  score: 32.5 bits;  conditional E-value: 2.6e-11
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 l+++F+++D DgdGkI+++E++++++
  KKY17740.1 101 LDWAFQLYDIDGDGKISYDEMLAIVE 126
                 89********************9986 PP

  == domain 5  score: 28.0 bits;  conditional E-value: 7e-10
                 HHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkel 25 
                 +k+iFr++DkD +G +d+eEfke 
  KKY17740.1 149 VKKIFRMMDKDENGCLDKEEFKEG 172
                 79********************97 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.15   1.9e+02      10      27 ..      15      32 ..      12      35 .. 0.82
   2 !   11.4   0.0   0.00019      0.24      14      28 ..      40      54 ..      36      61 .. 0.88
   3 !   27.1   0.1   1.7e-09   2.2e-06       3      27 ..      66      90 ..      64      96 .. 0.92
   4 !   21.5   0.0   1.1e-07   0.00014       5      26 ..     104     125 ..     104     133 .. 0.91
   5 !   23.0   0.1   3.5e-08   4.5e-05       2      24 ..     149     171 ..     148     175 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.15
   EF-hand_6 10 DkdgdGkidaeElrkalr 27
                D  ++ + d++El+++++
  KKY17740.1 15 DLQKSTHFDKKELQQWYK 32
                556677789******997 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00019
   EF-hand_6 14 dGkidaeElrkalrk 28
                +G++++eE++k++r+
  KKY17740.1 40 SGTLTKEEFQKIYRQ 54
                9************96 PP

  == domain 3  score: 27.1 bits;  conditional E-value: 1.7e-09
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalr 27
                +++Fk fD d++G+id+ E++ al+
  KKY17740.1 66 DYVFKVFDADKSGTIDFREFICALS 90
                589********************98 PP

  == domain 4  score: 21.5 bits;  conditional E-value: 1.1e-07
   EF-hand_6   5 aFklfDkdgdGkidaeElrkal 26 
                 aF+l+D dgdGki+++E+ ++ 
  KKY17740.1 104 AFQLYDIDGDGKISYDEMLAIV 125
                 7*****************9986 PP

  == domain 5  score: 23.0 bits;  conditional E-value: 3.5e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrk 24 
                 ++++F+++Dkd +G++d+eE++ 
  KKY17740.1 149 VKKIFRMMDKDENGCLDKEEFKE 171
                 689******************85 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   0.00013      0.17      38      71 .]      19      53 ..       4      53 .. 0.82
   2 !   29.6   0.2   5.5e-10     7e-07      16      69 ..      40      88 ..      39      90 .. 0.85
   3 !   58.0   0.9   7.4e-19   9.4e-16       2      68 ..      99     171 ..      98     174 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00013
   EF-hand_7 38 gsklsdeelellfkefDtdk.dGvisfdEFlklyr 71
                  +++++el+++ k f +d+ +G+++ +EF+k+yr
  KKY17740.1 19 STHFDKKELQQWYKGFLKDCpSGTLTKEEFQKIYR 53
                45678899********999988***********97 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 5.5e-10
   EF-hand_7 16 dgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69
                +g l+kee+++++r++f     g+++s    +++fk fD dk+G+i+f EF  +
  KKY17740.1 40 SGTLTKEEFQKIYRQFF---PFGDPSS--FADYVFKVFDADKSGTIDFREFICA 88
                699*************9...5555533..466*******************876 PP

  == domain 3  score: 58.0 bits;  conditional E-value: 7.4e-19
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdee......lellfkefDtdkdGvisfdEFlk 68 
                 +kl +aF+++D dgdg+++++e+l ++++i+ + g ++kl+++e      ++++f+++D+d +G+++ +EF++
  KKY17740.1  99 DKLDWAFQLYDIDGDGKISYDEMLAIVEAIYKMVGSMVKLPEDEdtpekrVKKIFRMMDKDENGCLDKEEFKE 171
                 799*******************999******9997777777766666667*********************87 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.8   6.1e+03      17      23 ..      23      29 ..      23      29 .. 0.82
   2 !    6.6   0.0    0.0046       5.9      13      24 ..      40      51 ..      40      52 .. 0.89
   3 !   20.4   0.5     2e-07   0.00025       3      21 ..      66      85 ..      64      86 .. 0.91
   4 !   22.7   0.1   3.7e-08   4.7e-05       4      23 ..     104     123 ..     101     125 .. 0.87
   5 !   17.2   0.3     2e-06    0.0026       2      23 ..     150     171 ..     149     173 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.8
                -HHHHHH CS
   EF-hand_5 17 skeELkt 23
                +k EL++
  KKY17740.1 23 DKKELQQ 29
                7899986 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0046
                SSCE-HHHHHHH CS
   EF-hand_5 13 DGkIskeELktl 24
                +G+++keE++++
  KKY17740.1 40 SGTLTKEEFQKI 51
                7********985 PP

  == domain 3  score: 20.4 bits;  conditional E-value: 2e-07
                H.HHHHH-SS-SSCE-HHHH CS
   EF-hand_5  3 d.tFqaiDlNgDGkIskeEL 21
                d +F+ +D++++G+I++ E+
  KKY17740.1 66 DyVFKVFDADKSGTIDFREF 85
                669****************9 PP

  == domain 4  score: 22.7 bits;  conditional E-value: 3.7e-08
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +Fq  D +gDGkIs +E  +
  KKY17740.1 104 AFQLYDIDGDGKISYDEMLA 123
                 6****************866 PP

  == domain 5  score: 17.2 bits;  conditional E-value: 2e-06
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 k+ F+++D++  G ++keE+k+
  KKY17740.1 150 KKIFRMMDKDENGCLDKEEFKE 171
                 679*****************96 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.3   4.2e+03      21      31 ..       5      16 ..       1      27 [. 0.71
   2 !   24.1   0.6   1.9e-08   2.4e-05       1      49 [.      39      86 ..      39      92 .. 0.81
   3 !   18.7   0.2   8.8e-07    0.0011      25      50 ..      98     123 ..      95     128 .. 0.90
   4 !   15.8   0.5   7.2e-06    0.0092       8      50 ..     126     171 ..     125     175 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.3
   EF-hand_8 21 k.glseeevdil 31
                + +ls++++++l
  KKY17740.1  5 QsKLSPQQLEDL 16
                456888877765 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 1.9e-08
   EF-hand_8  1 ekgkItreelrrilril...glkkglseee.vdilfrefDtdgdGkisfeEFc 49
                ++g +t+ee+++i+r +   g      ++  +d +f+ fD d++G+i+f EF+
  KKY17740.1 39 PSGTLTKEEFQKIYRQFfpfG-----DPSSfADYVFKVFDADKSGTIDFREFI 86
                5899********995442333.....34445*********************7 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 8.8e-07
   EF-hand_8  25 eeevdilfrefDtdgdGkisfeEFcv 50 
                 e+++d+ f + D+dgdGkis++E ++
  KKY17740.1  98 EDKLDWAFQLYDIDGDGKISYDEMLA 123
                 6899*******************776 PP

  == domain 4  score: 15.8 bits;  conditional E-value: 7.2e-06
   EF-hand_8   8 eelrril.rilglkk..glseeevdilfrefDtdgdGkisfeEFcv 50 
                 e  ++++ ++++l++  ++ e+ v  +fr +D d++G +++eEF +
  KKY17740.1 126 EAIYKMVgSMVKLPEdeDTPEKRVKKIFRMMDKDENGCLDKEEFKE 171
                 66778888888888898899999*********************87 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.56   7.2e+02      23      66 ..       5      49 ..       2      62 .. 0.62
   2 !    8.6   0.1    0.0014       1.8      47      71 ..      67      91 ..      61      94 .. 0.86
   3 !   17.6   0.2   2.1e-06    0.0027      41      82 ..      97     137 ..      91     143 .. 0.85
   4 !    9.1   0.1   0.00094       1.2      41      65 ..     145     169 ..     140     174 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.56
   EF-hand_4 23 dnkltgdkvapvlknskleedklekiwd..ladidedgkldfeefc 66
                ++kl+ +++  + k++++++++l++ ++  l d    g+l  eef 
  KKY17740.1  5 QSKLSPQQLEDLQKSTHFDKKELQQWYKgfLKDCP-SGTLTKEEFQ 49
                55677777777777777777777765532244443.3566666665 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0014
   EF-hand_4 47 kiwdladidedgkldfeefciamrl 71
                 ++++ d d+ g++df ef+ a+ +
  KKY17740.1 67 YVFKVFDADKSGTIDFREFICALSV 91
                578899*************998865 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 2.1e-06
   EF-hand_4  41 eedklekiwdladidedgkldfeefciamrlifdlvngeikd 82 
                  edkl+  ++l did dgk+ ++e+  ++  i+ +v     +
  KKY17740.1  97 MEDKLDWAFQLYDIDGDGKISYDEMLAIVEAIYKMVGSM-VK 137
                 4799*******************************9654.34 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00094
   EF-hand_4  41 eedklekiwdladidedgkldfeef 65 
                 +e++++ki+ + d de+g+ld eef
  KKY17740.1 145 PEKRVKKIFRMMDKDENGCLDKEEF 169
                 578899******************9 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.63   8.1e+02      36      64 ..      26      54 ..      12      56 .. 0.73
   2 !   16.5   0.1   6.1e-06    0.0077       2      63 ..      67     126 ..      66     129 .. 0.89
   3 ?    6.0   0.1     0.012        15       3      59 ..     104     170 ..     102     172 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.63
   EF-hand_9 36 eLeelakelDPdgedasvdldtflrvmre 64
                eL++++k +  d   +++ ++ f+++ r+
  KKY17740.1 26 ELQQWYKGFLKDCPSGTLTKEEFQKIYRQ 54
                78999888766666677899999988776 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 6.1e-06
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmr 63 
                  vF+v+D +k G++   + i  L  +  +   e +L+   +++D dg  +++  d  l+++ 
  KKY17740.1  67 YVFKVFDADKSGTIDFREFICALSVTS-RGQMEDKLDWAFQLYDIDGD-GKISYDEMLAIVE 126
                 68*********************7655.5999**************99.9999999888875 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.012
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaq...........dpeeseLeelakelDPdgedasvdldtfl 59 
                  F+++D++  G++   +++++ +a  +            d++e ++ +  +++D d++ + +d++ f+
  KKY17740.1 104 AFQLYDIDGDGKISYDEMLAIVEAIYKMvgsmvklpedeDTPEKRVKKIFRMMDKDEN-GCLDKEEFK 170
                 6999999999999999888887764332222244444445666677777777776666.777777775 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.013        17      38     111 ..       9      86 ..       2      88 .. 0.69
   2 !    9.4   0.7   0.00099       1.3      51      86 ..      96     131 ..      90     171 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.013
  SPARC_Ca_bdg  38 eelekkeeeknlkeckepvawkFsklDtn.sdkvlsksELaplraplvkleh...CikpflescDadkdkkislkEwc 111
                   + ++ ++ +k+++  k++++  ++ + ++   ++l+k+E ++++ ++ ++       +  ++  Dadk ++i+ +E++
    KKY17740.1   9 SPQQLEDLQKSTHFDKKELQQWYKGFLKDcPSGTLTKEEFQKIYRQFFPFGDpssFADYVFKVFDADKSGTIDFREFI 86 
                   445555666666666665554454444554899999*******999998864111456789999***********996 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00099
  SPARC_Ca_bdg  51 eckepvawkFsklDtnsdkvlsksELaplraplvkl 86 
                   ++++++ w F+  D + d+ +s  E+ ++ + + k+
    KKY17740.1  96 QMEDKLDWAFQLYDIDGDGKISYDEMLAIVEAIYKM 131
                   678999*******************99998888776 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.3   4.2e+03      35      48 ..      19      32 ..      15      34 .. 0.74
   2 ?    1.3   0.0      0.24   3.1e+02      35      49 ..      40      54 ..      36      55 .. 0.88
   3 ?    2.8   0.0     0.085   1.1e+02      21      43 ..      63      85 ..      61      87 .. 0.88
   4 ?   -2.9   0.0       5.2   6.7e+03       1       7 [.     115     121 ..     115     127 .. 0.80
   5 ?   10.3   0.1   0.00039      0.51      24      45 ..     150     171 ..     145     175 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.3
  EF-hand_10 35 sgrLegeEieeFyk 48
                s   + +E+++ yk
  KKY17740.1 19 STHFDKKELQQWYK 32
                66678888888887 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.24
  EF-hand_10 35 sgrLegeEieeFykl 49
                sg+L  eE+++ y++
  KKY17740.1 40 SGTLTKEEFQKIYRQ 54
                89********99985 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.085
  EF-hand_10 21 eYAekLFkkcDkSksgrLegeEi 43
                ++A  +Fk  D  ksg+++  E+
  KKY17740.1 63 SFADYVFKVFDADKSGTIDFREF 85
                689999**********9998886 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 5.2
  EF-hand_10   1 kmsfkEv 7  
                 k+s++E+
  KKY17740.1 115 KISYDEM 121
                 7899998 PP

  == domain 5  score: 10.3 bits;  conditional E-value: 0.00039
  EF-hand_10  24 ekLFkkcDkSksgrLegeEiee 45 
                 +k+F+  Dk ++g L+ eE++e
  KKY17740.1 150 KKIFRMMDKDENGCLDKEEFKE 171
                 689****************987 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.2    0.0021       2.7     329     366 ..      25      59 ..      15      77 .. 0.89
   2 ?    5.3   0.0    0.0058       7.4     168     199 ..     115     146 ..     106     186 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0021
     DUF1679 329 elLeqyyetflkaledngeepytleqLkdsYklyfplm 366
                 + L+q+y+ flk +    +   t e+ ++ Y+ +fp +
  KKY17740.1  25 KELQQWYKGFLKDC---PSGTLTKEEFQKIYRQFFPFG 59 
                 669***********...46699**************86 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0058
     DUF1679 168 nikadelipvlkaiAtlqalslslseeekksa 199
                 +i+ de++++++ai ++    ++l+e+e +  
  KKY17740.1 115 KISYDEMLAIVEAIYKMVGSMVKLPEDEDTPE 146
                 6899*********************9987654 PP

>> Staphylokinase  Staphylokinase/Streptokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0021       2.7      35      82 ..      41      82 ..      20     122 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0021
  Staphylokinase 35 kigekltseeLlkaieeqLdardpaytiyqnddsfeivdfdsdakief 82
                        +lt+ee++k+ ++   + dp   ++     f++ d d +++i f
      KKY17740.1 41 G---TLTKEEFQKIYRQFFPFGDPSSFADY---VFKVFDADKSGTIDF 82
                    4...49*************99999888755...5*********99985 PP

>> Phage_XkdX  Phage uncharacterised protein (Phage_XkdX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0047         6      25      35 ..      41      51 ..      38      53 .. 0.90
   2 ?   -3.0   0.0       6.2   7.9e+03       6      22 ..     116     132 ..     115     135 .. 0.63
   3 ?    2.8   0.0     0.092   1.2e+02      24      34 ..     161     171 ..     154     171 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0047
  Phage_XkdX 25 gkITkeeYeeI 35
                g +Tkee+++I
  KKY17740.1 41 GTLTKEEFQKI 51
                789*******9 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.2
  Phage_XkdX   6 eyYdwglwtkeqvrdaV 22 
                   Yd+ l   e + + V
  KKY17740.1 116 ISYDEMLAIVEAIYKMV 132
                 56777776666666666 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.092
  Phage_XkdX  24 kgkITkeeYee 34 
                  g+++kee++e
  KKY17740.1 161 NGCLDKEEFKE 171
                 69*******98 PP

>> PMBR  Pseudomurein-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.16     2e+02       2      15 ..      40      53 ..      39      55 .. 0.84
   2 ?   -1.1   0.0         2   2.6e+03       2      11 ..      77      86 ..      76      90 .. 0.82
   3 ?    5.6   0.0     0.015        19       1      28 [.     112     139 ..     112     140 .. 0.78
   4 ?   -2.8   0.0       6.9   8.8e+03       6      16 ..     165     175 ..     164     175 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.16
        PMBR  2 sgkisyeeyldmas 15
                sg++++ee+ ++++
  KKY17740.1 40 SGTLTKEEFQKIYR 53
                89******988876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2
        PMBR  2 sgkisyeeyl 11
                sg+i ++e++
  KKY17740.1 77 SGTIDFREFI 86
                89****9997 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.015
        PMBR   1 gsgkisyeeyldmasrvlafiesngrlP 28 
                 g+gkisy+e l++   +++ + s  +lP
  KKY17740.1 112 GDGKISYDEMLAIVEAIYKMVGSMVKLP 139
                 579*******999988877666666666 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 6.9
        PMBR   6 syeeyldmasr 16 
                  +ee+++ ++r
  KKY17740.1 165 DKEEFKEGSKR 175
                 68999999887 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.63     8e+02      54      71 ..      34      51 ..       9      56 .. 0.59
   2 ?    5.3   0.0     0.019        24       2      27 ..      65      90 ..      64      99 .. 0.91
   3 ?    3.6   0.2     0.064        82      54      79 ..     155     180 ..     100     185 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.63
  EF-hand_14 54 eaeesetleldretFkkc 71
                  +++ + +l +e+F+k+
  KKY17740.1 34 FLKDCPSGTLTKEEFQKI 51
                344455589999999987 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.019
  EF-hand_14  2 edllfdlfkdeetdklsvakllkaLa 27
                +d +f++f+ ++++++ + +++ aL+
  KKY17740.1 65 ADYVFKVFDADKSGTIDFREFICALS 90
                79*******************99986 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.064
  EF-hand_14  54 eaeesetleldretFkkcveenivLi 79 
                  + + e+  ld+e+Fk+  + +  ++
  KKY17740.1 155 MMDKDENGCLDKEEFKEGSKRDETIV 180
                 34556778899999998776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      633  (0.0353059); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1384.32
//
Query:       KKY17741.1  [L=424]
Description: putative 26s proteasome non-atpase regulatory subunit 11 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-46  157.6   1.7    5.4e-46  155.8   0.1    2.7  3  RPN6_N        26S proteasome regulatory subunit RPN6 N-termin
    4.6e-21   75.3   0.8    2.3e-20   73.0   0.3    2.3  2  PCI           PCI domain
    5.4e-11   42.0   0.3    1.3e-10   40.8   0.3    1.7  1  RPN6_C_helix  26S proteasome subunit RPN6 C-terminal helix do
    7.5e-05   22.4   0.2    0.00018   21.2   0.2    1.7  1  DDRGK         DDRGK domain
    0.00073   19.5   0.2       0.31   11.0   0.0    2.8  2  HTH_Crp_2     Crp-like helix-turn-helix domain
     0.0019   17.6   4.3     0.0019   17.6   4.3    2.2  2  TPR_MalT      MalT-like TPR region
     0.0087   16.3  12.7        0.4   11.0   1.0    4.3  4  TPR_12        Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.038   14.0   1.7          7    6.9   0.2    3.6  3  TPR_7         Tetratricopeptide repeat
      0.038   14.2   0.1       0.12   12.6   0.0    1.8  1  HTH_17        Helix-turn-helix domain
      0.055   14.0   0.0       0.19   12.2   0.0    1.9  1  ParB          ParB family
      0.076   13.1   0.0       0.32   11.1   0.0    2.0  2  DprA_WH       DprA winged helix domain
      0.076   12.9   0.5        2.1    8.3   0.1    2.5  2  HTH_5         Bacterial regulatory protein, arsR family
      0.082   13.0   0.0        1.9    8.7   0.0    2.9  3  HTH_28        Helix-turn-helix domain
       0.12   13.2   3.2        3.4    8.8   0.0    4.6  4  TPR_14        Tetratricopeptide repeat
       0.26   11.2   1.6         12    5.9   0.1    3.6  4  TPR_1         Tetratricopeptide repeat
       0.27   11.9   5.8       0.49   11.0   0.3    2.8  2  DUF4398       Domain of unknown function (DUF4398)
       0.44   11.0   3.4        4.6    7.7   1.0    2.6  2  DUF3496       Domain of unknown function (DUF3496)


Domain annotation for each model (and alignments):
>> RPN6_N  26S proteasome regulatory subunit RPN6 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.8   0.1   5.1e-49   5.4e-46       1     117 []      14     130 ..      14     130 .. 0.99
   2 ?   -0.8   0.1       1.8   1.9e+03      75      95 ..     259     279 ..     232     286 .. 0.83
   3 ?   -2.2   0.1       4.9   5.2e+03      20      39 ..     289     308 ..     271     311 .. 0.57

  Alignments for each domain:
  == domain 1  score: 155.8 bits;  conditional E-value: 5.1e-49
      RPN6_N   1 AeelaksdpkeaeelykeilskkskedeealreqeqalleLgelyrdqkkaeeLaelikesrsflssiaKaKtaKlvrtLldlfskipnslelqievlk 99 
                 A+++a+++p+eae +yk+ilsk + ++++alr++e al+ Lgelyrd+k+ +eLael+k+srs+lss+aKaKtaKlvr+Lld+fs+ipnsle+qi v+k
  KKY17741.1  14 AKRVASKNPTEAEVIYKDILSKGPGSSDAALRDYEGALVGLGELYRDTKNISELAELLKTSRSTLSSFAKAKTAKLVRQLLDYFSAIPNSLETQIVVTK 112
                 7889999******************************************************************************************** PP

      RPN6_N 100 esiewakeekriFLrqsL 117
                 ++iewa +ekr+FLrq+L
  KKY17741.1 113 SCIEWAVSEKRSFLRQNL 130
                 ****************98 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.8
      RPN6_N  75 KlvrtLldlfskipnslelqi 95 
                 K++ +L+d ++++ ns++ q 
  KKY17741.1 259 KIMLNLVDDVTSLLNSKQAQK 279
                 888899999999999999885 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 4.9
      RPN6_N  20 lskkskedeealreqeqall 39 
                  + + ++ +++l+e+eqal 
  KKY17741.1 289 KAVARAHANRSLEEYEQALS 308
                 33333555577888888875 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.4   1.5e+03      25      42 ..      96     137 ..      60     160 .. 0.58
   2 !   73.0   0.3   2.2e-23   2.3e-20       2     103 ..     287     388 ..     286     390 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.4
                 H........................HHHHHHHTTHHHHHHHH CS
         PCI  25 l........................eeelladdglaqllesL 42 
                 +                        e++++ +++l++ l sL
  KKY17741.1  96 YfsaipnsletqivvtksciewavsEKRSFLRQNLETRLVSL 137
                 133333333444555555555555555555555555555555 PP

  == domain 2  score: 73.0 bits;  conditional E-value: 2.2e-23
                 HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSSEEEETTTTE CS
         PCI   2 sysdllkalrsgnlsgfseelkdleeelladdglaqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIrdgeirakidqesgi 100
                 +++++ +a  +++l++++++l  ++ el  d++++ +l +L++ + e++l++v++++s+++++++ak+++l++++vE+ l+++I d+ i + +dq +g+
  KKY17741.1 287 AMKAVARAHANRSLEEYEQALSNYRYELGSDVFIRNHLRRLYDAMLEQNLIKVIEPFSRVEIDHIAKMVGLDTQQVERKLSQMILDKVIVGVLDQGAGC 385
                 689999********************************************************************************************* PP

                 EEE CS
         PCI 101 vvf 103
                 +++
  KKY17741.1 386 LII 388
                 *97 PP

>> RPN6_C_helix  26S proteasome subunit RPN6 C-terminal helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.3   1.2e-13   1.3e-10       2      27 .]     395     420 ..     394     420 .. 0.95

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 1.2e-13
  RPN6_C_helix   2 DktYeaALeTIknmgkVVDsLYeKAa 27 
                   D +Y+aALeTI++++ VVD LY+++a
    KKY17741.1 395 DTGYDAALETIGKLSSVVDVLYTNQA 420
                   99*********************986 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.2   1.7e-07   0.00018      49     149 ..     277     381 ..     265     412 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.7e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....HHHHHHHHHHH-SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSS CS
       DDRGK  49 eeekekkkeeeerkkeeekerkeqeeyeklksefvveeegtekesaeeeek.....lleefinyikekKvvlleelavkfklktqevierikeLeeqgs 142
                  ++++  + e+++   + ++++  eeye+  s+   e   +   +++ + +     l +++i+ i+    v+++++a   +l+tq+v  ++ ++  ++ 
  KKY17741.1 277 AQKYAGTNLEAMKAVARAHANRSLEEYEQALSNYRYELGSDVFIRNHLR-RlydamLEQNLIKVIEPFSRVEIDHIAKMVGLDTQQVERKLSQMILDKV 374
                 5555666667777777788888888888888887776555444443332.2244558899*************************************** PP

                 S-EEE-T CS
       DDRGK 143 ltGvlDd 149
                 + GvlD 
  KKY17741.1 375 IVGVLDQ 381
                 *****96 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.018        19      26      40 ..      66      80 ..      63      92 .. 0.89
   2 !   11.0   0.0    0.0003      0.31      24      52 ..     348     376 ..     323     392 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.018
                HHHHHTTSSHHHHHH CS
   HTH_Crp_2 26 elAsmlGltretvsr 40
                elA++l ++r+t+s 
  KKY17741.1 66 ELAELLKTSRSTLSS 80
                9************96 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0003
                 HHHHHHHTTSSHHHHHHHHHHHHHTTSEE CS
   HTH_Crp_2  24 qeelAsmlGltretvsrilseLkreglis 52 
                  + +A m+Gl  ++v r ls++  +++i 
  KKY17741.1 348 IDHIAKMVGLDTQQVERKLSQMILDKVIV 376
                 5789******************9999997 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   4.3   1.8e-06    0.0019     186     311 ..      66     199 ..      54     223 .. 0.83
   2 ?   -0.0   0.3      0.42   4.4e+02     129     188 ..     216     276 ..     205     336 .. 0.48

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.8e-06
    TPR_MalT 186 kaeelaresnfhvdwlanaeevrvrlwlaqgdlaaaerwleaa........elpsdddnhflelelrn.larvllalgrydeAlellerLlkaaeelgr 275
                 ++ el+++s+ ++   a+a+ ++++  ++    +a+ + le++        e+ ++++ +fl+++l++ l+ +++    + + l+l+++Ll++ ++l  
  KKY17741.1  66 ELAELLKTSRSTLSSFAKAKTAKLV-RQLLDYFSAIPNSLETQivvtksciEWAVSEKRSFLRQNLETrLVSLYMQKQSWYDSLTLINSLLRELKRLDD 163
                 5667777777777777778888864.57777888888888888888888999**************88799999999999*****************99 PP

    TPR_MalT 276 vrslieiliLqalalqaqgreeeAlaaLeqALeLAe 311
                    l+e+++L +++++a+ ++++A aaL+ A + A+
  KKY17741.1 164 KLVLVEVQLLESQVYHALTNQPKARAALTSARTSAA 199
                 999**************************9977665 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.42
    TPR_MalT 129 adllyEwndLeeAeqhlqeGie.lleqlepeaald..ayvllarialaqGdleeAetllekae 188
                 + l+ E  d+ +A  +  e++e +  q e++ a+    y+ll++i    + +++ ++ll+  +
  KKY17741.1 216 GMLHAEDKDFNTAFSYFIEALEgYHSQDETAKATSalQYMLLCKIM--LNLVDDVTSLLNSKQ 276
                 5566666666666666655555332222333333301333333333..333334444433333 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.7   1.7e+03       5      21 ..      50      66 ..      44      84 .. 0.65
   2 !   11.0   1.0   0.00038       0.4       5      72 ..     130     195 ..     126     199 .. 0.93
   3 !    7.4   0.1    0.0049       5.2       9      40 ..     215     244 ..     208     258 .. 0.77
   4 ?    3.0   0.3      0.12   1.2e+02       8      26 ..     292     310 ..     275     317 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.7
      TPR_12  5 alnnlaavlrrlgryde 21
                al+ l++++r  ++  e
  KKY17741.1 50 ALVGLGELYRDTKNISE 66
                45556666666655544 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00038
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 + ++l +++++ + + ++l+l +  l+  +rl  +d++ +++++   +++y+al ++ +A+++l+ a 
  KKY17741.1 130 LETRLVSLYMQKQSWYDSLTLINSLLRELKRL--DDKLVLVEVQLLESQVYHALTNQPKARAALTSAR 195
                 5567999*************************..*****************************99886 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0049
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllGpd 40 
                  ++++++ +++  A++++ +ale + +   ++
  KKY17741.1 215 SGMLHAEDKDFNTAFSYFIEALEGYHSQ--DE 244
                 6889999****************99665..22 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.12
      TPR_12   8 nlaavlrrlgrydeAlell 26 
                  +a++ r l++y++Al+++
  KKY17741.1 292 ARAHANRSLEEYEQALSNY 310
                 4555666666666666655 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.08        84       1      24 [.      50      73 ..      50      80 .. 0.91
   2 ?   -0.0   0.0       1.1   1.2e+03       7      30 ..     217     240 ..     214     247 .. 0.77
   3 ?    6.9   0.2    0.0066         7       6      34 ..     292     320 ..     287     322 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.08
       TPR_7  1 aLlnLarlysrlGdyeeAielyeq 24
                aL+ L++ly++  + +e++el++ 
  KKY17741.1 50 ALVGLGELYRDTKNISELAELLKT 73
                7899***************99986 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.1
       TPR_7   7 rlysrlGdyeeAielyeqsLaltk 30 
                  l+ ++ d+ +A +++ ++L+   
  KKY17741.1 217 MLHAEDKDFNTAFSYFIEALEGYH 240
                 5788999999********886544 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0066
       TPR_7   6 arlysr..lGdyeeAielyeqsLaltkdped 34 
                 ar++ +  l +ye+A++ y+   +l +d ++
  KKY17741.1 292 ARAHANrsLEEYEQALSNYRY--ELGSDVFI 320
                 67777777************9..88888776 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00011      0.12       4      25 ..      64      85 ..      63      92 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00011
      HTH_17  4 veEaAelLgvsrstvyrlirrg 25
                ++E+AelL+ srst+  +++++
  KKY17741.1 64 ISELAELLKTSRSTLSSFAKAK 85
                79**************999877 PP

>> ParB  ParB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00018      0.19       2     110 ..      37     143 ..      37     148 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00018
        ParB   2 PvaseLtlaDYklLlkvaeklekkdvelseliekvkeeiekvqsdtelaedeqkseilklikkeskrlkkpkkkdkavvekLaefedkkqfarkktkkR 100
                 P  s+ +l DY+  l    +l    +++sel e +k++ ++++s  +++ +    ++l+ +++  ++l+++ + +k+ +e  +  ++k+ f r+  + R
  KKY17741.1  37 PGSSDAALRDYEGALVGLGELYRDTKNISELAELLKTSRSTLSSFAKAKTAKLVRQLLDYFSAIPNSLETQIVVTKSCIE--WAVSEKRSFLRQNLETR 133
                 6689999****9655545555555569**************9999999999999*****************999999887..999************** PP

        ParB 101 lvsYefsrls 110
                 lvs  ++++s
  KKY17741.1 134 LVSLYMQKQS 143
                 **98777765 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       7.6     8e+03      13      25 ..     173     185 ..     170     193 .. 0.76
   2 ?   11.1   0.0   0.00031      0.32      13      49 ..     332     369 ..     328     375 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 7.6
     DprA_WH  13 lerrvLaaLgpeP 25 
                 le +v  aL ++P
  KKY17741.1 173 LESQVYHALTNQP 185
                 5778888888887 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00031
     DprA_WH  13 lerrvLaaLgp.ePvhvDqLvrrtglpaaevsaaLleL 49 
                 le+ +   ++p + v +D +++ +gl++++v + L+++
  KKY17741.1 332 LEQNLIKVIEPfSRVEIDHIAKMVGLDTQQVERKLSQM 369
                 68888888887799*****************9998875 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1     0.002       2.1      16      33 ..      62      79 ..      56      80 .. 0.88
   2 ?    1.9   0.0      0.19     2e+02      32      42 ..     320     330 ..     319     332 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.002
                EEHHHHHHHHTS-HHHHH CS
       HTH_5 16 lcvcelaeelglsqstvS 33
                + ++elae l+ s+st+S
  KKY17741.1 62 KNISELAELLKTSRSTLS 79
                789**************9 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.19
                 HHHHHHHHHHT CS
       HTH_5  32 vShHLkkLrea 42 
                 ++ HL++L++a
  KKY17741.1 320 IRNHLRRLYDA 330
                 789******97 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0018       1.9       8      31 ..      57      80 ..      56      84 .. 0.88
   2 ?   -2.0   0.0         4   4.2e+03       8      20 ..     234     247 ..     233     248 .. 0.80
   3 ?    0.3   0.0      0.77   8.1e+02      15      31 ..     348     364 ..     339     368 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0018
      HTH_28  8 llaaGhsvreaArelgisrrtvyr 31
                l+ + ++++e+A++l +sr+t+++
  KKY17741.1 57 LYRDTKNISELAELLKTSRSTLSS 80
                678889***************986 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4
      HTH_28   8 llaaGh.svreaAr 20 
                 ++++G  s++e+A+
  KKY17741.1 234 EALEGYhSQDETAK 247
                 6789966****997 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.77
      HTH_28  15 vreaArelgisrrtvyr 31 
                 ++ +A+ +g++ ++v r
  KKY17741.1 348 IDHIAKMVGLDTQQVER 364
                 778***********976 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0032       3.4      13      39 ..      18      44 ..       9      47 .. 0.86
   2 ?    0.1   0.0       1.9     2e+03       3      30 ..      50      77 ..      48      91 .. 0.79
   3 ?   -1.6   0.0       6.9   7.3e+03       6      30 ..     133     157 ..     130     169 .. 0.78
   4 ?   -0.7   0.2       3.5   3.7e+03       6      21 ..     292     307 ..     285     311 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0032
      TPR_14 13 alGdpdeAiallrralalaPddaeawl 39
                a+ +p eA+ +++++l+++P++ +a l
  KKY17741.1 18 ASKNPTEAEVIYKDILSKGPGSSDAAL 44
                6889****************9877654 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.9
      TPR_14  3 allalaeallalGdpdeAiallrralal 30
                al  l+e+++   +  e ++ll+   ++
  KKY17741.1 50 ALVGLGELYRDTKNISELAELLKTSRST 77
                66779999***9**99999999987665 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 6.9
      TPR_14   6 alaeallalGdpdeAiallrralal 30 
                 +l++++++ + + ++++l + +l+ 
  KKY17741.1 133 RLVSLYMQKQSWYDSLTLINSLLRE 157
                 5888999999999999988888774 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 3.5
      TPR_14   6 alaeallalGdpdeAi 21 
                 a+a+a + l+++++A+
  KKY17741.1 292 ARAHANRSLEEYEQAL 307
                 4455555566666665 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       6.3   6.6e+03      19      25 ..      42      48 ..      41      51 .. 0.62
   2 ?   -1.0   0.0       1.7   1.8e+03       3      17 ..      50      64 ..      48      66 .. 0.83
   3 ?    1.5   0.0      0.29   3.1e+02       8      29 ..     216     237 ..     215     237 .. 0.92
   4 ?    5.9   0.1     0.011        12       7      25 ..     293     311 ..     292     311 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 6.3
                HHHHHHH CS
       TPR_1 19 eAleyye 25
                 Al +ye
  KKY17741.1 42 AALRDYE 48
                6777776 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.7
                HHHHHHHHHHHTT-H CS
       TPR_1  3 alynlGnayfklgky 17
                al +lG +y+  ++ 
  KKY17741.1 50 ALVGLGELYRDTKNI 64
                6789*****999886 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.29
                 HHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyekALe 29 
                 G+++ + ++++ A  y+ +ALe
  KKY17741.1 216 GMLHAEDKDFNTAFSYFIEALE 237
                 78888999************98 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.011
                 HHHHHHHTT-HHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyye 25 
                 +++a ++l++y++Al  y+
  KKY17741.1 293 RAHANRSLEEYEQALSNYR 311
                 79999**********9985 PP

>> DUF4398  Domain of unknown function (DUF4398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   0.00047      0.49       5      68 ..     186     248 ..     185     253 .. 0.83
   2 ?    2.0   0.9       0.3   3.2e+02      17      48 ..     276     306 ..     266     312 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00047
     DUF4398   5 dAraaleaAraagaeeyApaeleeAreaLaqAeaamaekdyeeAdhlaylAerdaelAearAka 68 
                  Araal++Ar++ a+ y p  l +A   ++ +   +++kd  +A  +  +A +     +++Aka
  KKY17741.1 186 KARAALTSARTSAASVYTPP-LLQAGLDMQSGMLHAEDKDFNTAFSYFIEALEGYHSQDETAKA 248
                 59*****************9.99***********999999999999999999854444444444 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.3
     DUF4398  17 gaeeyApaeleeAreaLaqAeaamaekdyeeA 48 
                 +a++yA   l eA +a+a+A a  + ++ye+A
  KKY17741.1 276 QAQKYAGTNL-EAMKAVARAHANRSLEEYEQA 306
                 4577777755.688888888887777777766 PP

>> DUF3496  Domain of unknown function (DUF3496)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   1.0    0.0043       4.6      30      90 ..     137     196 ..     119     203 .. 0.87
   2 ?    2.6   0.1      0.16   1.7e+02      13      36 ..     283     306 ..     274     330 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0043
     DUF3496  30 LEkykqlyleelkvrksLsnklnktnerLaevstkllvekeqnrsllstlttrpvlespcv 90 
                 L   kq +  +l + +sL  +l++ + +L  v+ +l +e +   +l +  ++r +l s ++
  KKY17741.1 137 LYMQKQSWYDSLTLINSLLRELKRLDDKLVLVEVQL-LESQVYHALTNQPKARAALTSART 196
                 556799*****************************9.677789999999999999987765 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.16
     DUF3496  13 selskmKtsqedsnkteLEkykql 36 
                  +l  mK++ +   +  LE+y+q+
  KKY17741.1 283 TNLEAMKAVARAHANRSLEEYEQA 306
                 678899**9999999*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1157  (0.0645323); expected 358.6 (0.02)
Passed bias filter:                      682  (0.0380389); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 2546.07
//
Query:       KKY17742.1  [L=446]
Description: putative small nucleolar ribonucleoprotein complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.1e-34  115.9  12.5    1.4e-33  115.0  12.5    1.5  1  Sof1          Sof1-like domain
    1.5e-27   95.3   7.8    8.9e-06   26.4   0.0    7.1  7  WD40          WD domain, G-beta repeat
    4.9e-09   36.4   0.1       0.14   12.5   0.0    4.5  4  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
     0.0017   18.3   0.2      0.031   14.2   0.0    2.5  2  eIF2A         Eukaryotic translation initiation factor eIF2A
     0.0041   16.1   0.0      0.071   12.1   0.0    2.6  3  Ge1_WD40      WD40 region of Ge1, enhancer of mRNA-decapping 
  ------ inclusion threshold ------
      0.038   12.5   0.1       0.29    9.6   0.1    2.3  2  Cytochrom_D1  Cytochrome D1 heme domain
       0.14   11.0   0.0        9.5    5.0   0.0    2.2  2  PALB2_WD40    Partner and localizer of BRCA2 WD40 domain


Domain annotation for each model (and alignments):
>> Sof1  Sof1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0  12.5   5.5e-37   1.4e-33       1      87 []     355     441 ..     355     441 .. 0.99

  Alignments for each domain:
  == domain 1  score: 115.0 bits;  conditional E-value: 5.5e-37
        Sof1   1 AkAseklgvlsaReraaleyreaLkekykhmpeikrIarhRhvPkaikkakkekremkeaekrKeenrrkhskkgsvprkserkkkv 87 
                 A+As++++++saR+r+aley++aL  +y+hmpei+rI+rhRh+Pk+ikka ++k+e++++ krKeen+rkhsk+g++pr+ser+k+v
  KKY17742.1 355 ANASSRSNIKSARQRQALEYDQALVSRYAHMPEIRRIKRHRHLPKTIKKAGEIKKEELASLKRKEENVRKHSKPGTMPRQSEREKMV 441
                 8************************************************************************************97 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.1e-06     0.018       8      38 .]      63      95 ..      58      95 .. 0.80
   2 !   15.5   0.1   9.4e-06     0.024       7      38 .]     105     136 ..     100     136 .. 0.81
   3 ?    2.4   0.2      0.13   3.3e+02       3      38 .]     146     179 ..     144     179 .. 0.81
   4 ?    5.5   0.0     0.013        34      12      38 .]     198     226 ..     188     226 .. 0.74
   5 ?    1.7   0.0      0.21   5.4e+02      14      38 .]     243     268 ..     239     268 .. 0.86
   6 !   25.2   0.0     8e-09   2.1e-05       4      38 .]     276     311 ..     274     311 .. 0.92
   7 !   26.4   0.0   3.5e-09   8.9e-06      12      37 ..     319     353 ..     314     354 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.1e-06
                ESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40  8 tGH.ssvtslafspdgaw.lasGsdDgtvriWd 38
                +GH ++v+ +a +p +   +asGs Dg v+iWd
  KKY17742.1 63 EGHvDGVYTMAKDPGSLQrFASGSGDGVVKIWD 95
                599888988876666666699**89*******9 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 9.4e-06
                 EESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   7 ltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                  ++H++ v + ++ pd ++++++  D+t++++d
  KKY17742.1 105 TKAHQNvVKGTCWTPDRKLISCAA-DKTIKVFD 136
                 47894437999********96555.******98 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.13
                 EEEEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGHssvtslafspdgawlasGsdDgtvriWd 38 
                 ++ t+ G s+ t+l+ +++++ +a +s   ++ i+d
  KKY17742.1 146 PISTYLGNSGFTGLSHHRNHPSIA-AS-STNISIYD 179
                 67888999889***********97.67.77777776 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.013
                 S.EEEEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40  12 s.vtslafspdgawlasG.sdDgtvriWd 38 
                 + +ts+af++  + ++++   D+ v ++d
  KKY17742.1 198 DtITSVAFNQTETSILAStALDRAVVLYD 226
                 25*****99999998766246****9998 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.21
                 EEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40  14 tslafspdgaw.lasGsdDgtvriWd 38 
                 ++++++p  a+ +a + +D++v+i+d
  KKY17742.1 243 NAVSWNPMEAFnFAVANEDHNVYIFD 268
                 578888888889888999******98 PP

  == domain 6  score: 25.2 bits;  conditional E-value: 8e-09
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 l +l+ H   v ++ fsp g  l+s+s+D+t+r+W+
  KKY17742.1 276 LNVLKDHvAAVMDVEFSPTGEELVSASYDRTIRLWN 311
                 567899*888*************************8 PP

  == domain 7  score: 26.4 bits;  conditional E-value: 3.5e-09
                 S.........EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  12 s.........vtslafspdgawlasGsdDgtvriW 37 
                 +         v s+++ pd+++++sGsdDg++r+W
  KKY17742.1 319 DiyhtkrmqrVFSVKYTPDSQYVLSGSDDGNIRLW 353
                 244444566799*********************** PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00014      0.35      26      71 ..      99     141 ..      80     148 .. 0.81
   2 ?    4.3   0.0      0.02        51      36      88 ..     195     246 ..     168     249 .. 0.81
   3 !   12.5   0.0   5.5e-05      0.14      10      89 ..     255     334 ..     245     335 .. 0.86
   4 !    7.0   0.0    0.0029       7.3      32      69 ..     323     357 ..     314     377 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
  ANAPC4_WD40  26 gqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                    +vw++  +++++ v++ +W pd kl+  a +d +++++d ++++
   KKY17742.1  99 RGEVWQT--KAHQNVVKGTCWTPDRKLISCA-ADKTIKVFDPYNTE 141
                  4578888..99*************9988765.68899999998876 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.02
  ANAPC4_WD40  36 kedsevrsLaWkpdg.klLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  ++  +++s+a+++ + ++La    d +v l+d  +   +++l+    +  + ++
   KKY17742.1 195 TSTDTITSVAFNQTEtSILASTALDRAVVLYDLRTSSPLSKLTLRLAS--NAVS 246
                  5677899****9876268999999***********9999999877553..5555 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 5.5e-05
  ANAPC4_WD40  10 iAlatedgellvfRl.ngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  +A+a+ed ++++f + ++ r  ++  +++   v +++++p g+ L+ a  d ++rl +   g+    +++k+ ++v ++++
   KKY17742.1 255 FAVANEDHNVYIFDMrKMDRALNV-LKDHVAAVMDVEFSPTGEELVSASYDRTIRLWNRDRGHSRDIYHTKRMQRVFSVKY 334
                  6999********988678999999.6888999*******************************999999999998888876 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0029
  ANAPC4_WD40  32 leedkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  +   k+ ++v s+++ pd +    + +dg++rl  a+ 
   KKY17742.1 323 T---KRMQRVFSVKYTPDSQYVLSGSDDGNIRLWRANA 357
                  3...778999***********************98764 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.14   3.6e+02     124     160 ..      88     126 ..      83     134 .. 0.76
   2 !   14.2   0.0   1.2e-05     0.031      49     160 ..     231     343 ..     187     354 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.14
                 S-EEEEEETTTTEEEEEEE-TT--E..EEE-TTSSEEEE CS
       eIF2A 124 aGeleiwdvkkkkkiakaeaanatl..vewspdgryvlT 160
                  G ++iwd +++ ++ +++a + ++    w pd +++  
  KKY17742.1  88 DGVVKIWDLTSRGEVWQTKAHQNVVkgTCWTPDRKLISC 126
                 68999*****99888888877766523569888887755 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.2e-05
                 --EEECCEESSS.EEEEEE-TTSS.-EEEEESSSSCEEEEEECS....CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETT...TTEEEE CS
       eIF2A  49 kksevvelkkegpihdvaWspksk.efaviyGkmpakvslfdlk....vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvk...kkkkia 139
                 ++ + ++l+ +    +v+W+p +  +fav   + + +v++fd++    +  + k + ++   + fsp+g+ ++ a +  +   + +w+++   +++ ++
  KKY17742.1 231 SPLSKLTLRLA--SNAVSWNPMEAfNFAV--ANEDHNVYIFDMRkmdrALNVLKDHVAAVMDVEFSPTGEELVSASYDRT---IRLWNRDrghSRDIYH 322
                 34444444444..4789999875424555..4678899999996644433333334445556789999999999999888...9999998775666677 PP

                 EEE-TT--EEEE-TTSSEEEE CS
       eIF2A 140 kaeaanatlvewspdgryvlT 160
                 + + +   +v++ pd++yvl 
  KKY17742.1 323 TKRMQRVFSVKYTPDSQYVLS 343
                 777777888999999999985 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.83   2.1e+03     205     221 ..      85     101 ..      81     143 .. 0.62
   2 !   12.1   0.0   2.8e-05     0.071     152     214 ..     247     310 ..     241     319 .. 0.92
   3 ?    0.5   0.0      0.09   2.3e+02     188     223 ..     327     362 ..     313     371 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.83
    Ge1_WD40 205 asedGevkffqvylede 221
                  s dG+vk + +   +e
  KKY17742.1  85 GSGDGVVKIWDLTSRGE 101
                 56666666666554433 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2.8e-05
    Ge1_WD40 152 gdkaeiwsvdmiaskygsgelsveeieegllkieehs.liveaafspdGtalatasedGevkff 214
                 ++ +e +++++ +++++    +  +++++l  +++h   +++  fsp G  l  as d +++++
  KKY17742.1 247 WNPMEAFNFAVANEDHNVYIFDMRKMDRALNVLKDHVaAVMDVEFSPTGEELVSASYDRTIRLW 310
                 667899**********************99999999559***********************98 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.09
    Ge1_WD40 188 sliveaafspdGtalatasedGevkffqvyledeee 223
                   + +  ++pd   +   s dG +++++ + + +++
  KKY17742.1 327 QRVFSVKYTPDSQYVLSGSDDGNIRLWRANASSRSN 362
                 4577788999999999***********988876655 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.12   3.1e+02     292     356 ..     172     238 ..     164     250 .. 0.77
   2 ?    9.6   0.1   0.00011      0.29     288     335 ..     257     304 ..     248     344 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.12
                   HT-EEEEETTBT.-EEE-HHHHHT--..EEEEEE-TTSSEEEEEEE--SSEEEEEETTTTEEEEEEE- CS
  Cytochrom_D1 292 ndsvaviDkktl.ekvltlaesaglk..vvhvEfnkdGdevwlSvwdgkdalvvyDdktlklkkvikl 356
                   + ++ ++D+    ++  ++ +++  +  ++ v fn+  + ++ S      a+v+yD +t   + +++l
    KKY17742.1 172 STNISIYDLSRPaTIPSQILHWPTSTdtITSVAFNQTETSILASTALDR-AVVLYDLRTSSPLSKLTL 238
                   5677888876654667788888887677999999999999999976544.999999999887777765 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00011
                   T-SSHT-EEEEETTBT-EEE-HHHHHT--EEEEEE-TTSSEEEEEEE- CS
  Cytochrom_D1 288 lnpdndsvaviDkktlekvltlaesaglkvvhvEfnkdGdevwlSvwd 335
                   +  ++ +v+++D +++  +l++ ++   +v+ vEf+  G+e+  + +d
    KKY17742.1 257 VANEDHNVYIFDMRKMDRALNVLKDHVAAVMDVEFSPTGEELVSASYD 304
                   4456789*************999999999***********98643333 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.009        23     153     218 ..     172     238 ..     151     248 .. 0.72
   2 ?    5.0   0.0    0.0037       9.5     303     349 ..     306     352 ..     296     354 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.009
  PALB2_WD40 153 dqqveilslseeGrskekqtlmpPe..etilafaeveGekdallgttvlnniviWnlktGqllkkiei 218
                   ++ i  ls    +  +q+l  P   +ti + a  + e   l +t+ +  +v+++l+t   l+k+ +
  KKY17742.1 172 STNISIYDLSRPA-TIPSQILHWPTstDTITSVAFNQTETSILASTALDRAVVLYDLRTSSPLSKLTL 238
                 4566666666554.4455666666422678888888999999999999999*********99999876 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0037
  PALB2_WD40 303 aiavWdlllghctalllpesdesWslvrWsgtdsqllaGqkdGsvlv 349
                 +i +W+  +gh + +  ++  ++   v+++  +  +l+G  dG++ +
  KKY17742.1 306 TIRLWNRDRGHSRDIYHTKRMQRVFSVKYTPDSQYVLSGSDDGNIRL 352
                 899*********************99******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 2962.97
//
Query:       KKY17743.1  [L=322]
Description: putative short-chain dehydrogenase reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-31  107.7   0.1    6.9e-31  107.2   0.1    1.1  1  adh_short      short chain dehydrogenase
    8.5e-25   87.7   0.0    1.1e-24   87.3   0.0    1.1  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
      2e-10   40.9   4.6    1.2e-09   38.3   4.6    2.0  1  KR             KR domain
    1.5e-07   31.2   0.1    3.7e-07   29.8   0.1    1.6  1  Epimerase      NAD dependent epimerase/dehydratase family
     0.0069   15.8   0.0      0.012   15.0   0.0    1.4  1  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
  ------ inclusion threshold ------
      0.013   14.6   0.1      0.021   14.0   0.1    1.3  1  RmlD_sub_bind  RmlD substrate binding domain
        0.1   12.0   0.0       0.16   11.3   0.0    1.2  1  DUF1776        Fungal family of unknown function (DUF1776)


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.2   0.1   2.7e-34   6.9e-31       2     186 ..      38     219 ..      37     226 .. 0.95

  Alignments for each domain:
  == domain 1  score: 107.2 bits;  conditional E-value: 2.7e-34
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGCSHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfselsee 99 
                 vvl+tG+++G+G  ia+ +  +G++v+v+d ++ +     ++++     + ++++D+ ++e+v+ + +k+ ++lg+  +++n+A+   +  +f +ls++
  KKY17743.1  38 VVLITGGAGGLGGLIAEVYGMRGVSVAVLDVKKPAG----EQIEG----VEYYECDIGNAEDVQHVKAKILNDLGQPSIVINCAAApIHGDTFLDLSAN 128
                 9*****************************997766....88887....99***********************************888899******* PP

                 HHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGT...EEEEEEEESSBSSHH CS
   adh_short 100 ewervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptg...irvnavaPGlvdTdm 186
                 ++ ++i+ N+ g++++ ra+lp ++ ++ +G+ v+vsSv ++   a+++ Y+AsKaa+ +l +sla+el++ g   ++   v PG + T +
  KKY17743.1 129 NFAKTINANFLGAVNILRAFLPGLIeSETGGTFVTVSSVLAHLCPANLSDYAASKAALSALHKSLAMELRQMGntnVKALLVEPGQLGTTL 219
                 ***********************9988899****************************************998888*********999876 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3   0.0   4.4e-28   1.1e-24       2     182 ..      44     223 ..      43     247 .. 0.88

  Alignments for each domain:
  == domain 1  score: 87.3 bits;  conditional E-value: 4.4e-28
                   TTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHH CS
  adh_short_C2   2 aasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdra 98 
                    a g+G  iA+ +  +G +v++ d+++ a +++e      g e++ecD+ + e+v+++ +++ +++g+  i++n+a+   +    fl++s ++f+++
    KKY17743.1  44 GAGGLGGLIAEVYGMRGVSVAVLDVKKPAGEQIE------GVEYYECDIGNAEDVQHVKAKILNDLGQPSIVINCAAAPIH-GDTFLDLSANNFAKT 133
                   57899***********************943333......5789*********************************9999.99************* PP

                   HHHHTHHHHHHHHHHHH.HCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGG...GTEEEEEEEE--BHCTGGGGS CS
  adh_short_C2  99 ldvnlyslfllakaalp.lmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgp...kgiRvNavspgpikTlaasgi 182
                   ++ n+ +++++++a+lp l++++  g  v++ssv a+   +n + y+a+Kaal al ++lA+el +    +++   v pg + T++   +
    KKY17743.1 134 INANFLGAVNILRAFLPgLIESEtgGTFVTVSSVLAHLCPANLSDYAASKAALSALHKSLAMELRQmgnTNVKALLVEPGQLGTTLFGWL 223
                   *****************97765557*************************************9866333678888888888888776555 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   4.6   4.8e-13   1.2e-09       2     162 ..      38     192 ..      37     206 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 4.8e-13
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE----.-----TTT CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgv.lrdkllee 99 
                 ++litGG+GgLG  +a+    +g +  vl  ++ +a e+    i+        ve++++D+ ++++v+++ ++i ++ ++ + vi++A + ++ +++ +
  KKY17743.1  38 VVLITGGAGGLGGLIAEVYGMRGVSVAVLDVKK-PAGEQ----IE-------GVEYYECDIGNAEDVQHVKAKILNDLGQPSIVINCAAApIHGDTFLD 124
                 579*******************99888887777.33333....33.......699***********************777888887665277899*** PP

                 --HHHHHHHHTTTTHHHHHHHHHTTT.....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHH CS
          KR 100 mtaedleqvlapKvkGawnLhelled.....esldffvlfSSiagllgsagqanYaaaNaflDalaey 162
                 ++a+++++ +++ + Ga n+ +++ +     e+   fv++SS+ + l  a  ++Yaa  a l al ++
  KKY17743.1 125 LSANNFAKTINANFLGAVNILRAFLPgliesETGGTFVTVSSVLAHLCPANLSDYAASKAALSALHKS 192
                 *******************9999988777778899*************************99998765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.1   1.5e-10   3.7e-07       1     115 [.      39     166 ..      39     207 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.5e-10
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHH....HHHHHH.T-SEEEE--S.---H....HHHHHSHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsale....rlfkee.qpdavihlAa.vggv....aassedpadfie 89 
                 +l+tG++G +G  +++    +g+ v +ld +  + + +++e +e +e+d+ ++++++    +++++  qp +vi++Aa   +     + s+++ a++i+
  KKY17743.1  39 VLITGGAGGLGGLIAEVYGMRGVSVAVLDVK--KPAGEQIEGVEYYECDIGNAEDVQhvkaKILNDLgQPSIVINCAAaPIHGdtflDLSANNFAKTIN 135
                 79*****************************..5555677788***********87622226677889********88555541122457888999*** PP

                 HHTHHHHHHHHHHH......HHTCTEEEEEEE CS
   Epimerase  90 knlqgtlnlleaar......kagvkrllflsS 115
                 +n+ g++n+l a        ++g   ++ +sS
  KKY17743.1 136 ANFLGAVNILRAFLpgliesETGG-TFVTVSS 166
                 ***********9874444322222.5666655 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.9e-06     0.012       1     113 [.      40     148 ..      40     166 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.9e-06
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH.....T-SEEEE--S-.....- CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev.....qpdevynLAAq.....s 86 
                    LiTG+aG  G  +ae    +g  v +++ ++ +   ++ie +            + +++D+ +++ ++++ a++     qp  v+n AA       
     KKY17743.1  40 LITGGAGGLGGLIAEVYGMRGVSVAVLDVKKPA--GEQIEGV------------EYYECDIGNAEDVQHVKAKIlndlgQPSIVINCAAApihgdT 121
                    8*********************99998766554..3455554............4578888888888877777666679********997544446 PP

                    -HHHHTTSHHHHHHHHTHHHHHHHHHH CS
  GDP_Man_Dehyd  87 hVdvsfekPeytaevnvlGtlrLLeai 113
                    + d s ++ ++t+++n+lG++++L a 
     KKY17743.1 122 FLDLSANNFAKTINANFLGAVNILRAF 148
                    7999********************996 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1     8e-06     0.021       3      60 ..      39     114 ..      37     144 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8e-06
                    EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT.............T--TTSHHHHHHHH.....HHH--SEEEE--- CS
  RmlD_sub_bind   3 ilvtGanGqlGseLakqlaeeglevlaltre.............eldltdaeavaell.....keakpdvvvnaAA 60 
                    +l+tG+ G lG  +a+    +g++v  l+ +             e+d+ +ae v+++      +  +p++v+n+AA
     KKY17743.1  39 VLITGGAGGLGGLIAEVYGMRGVSVAVLDVKkpageqiegveyyECDIGNAEDVQHVKakilnDLGQPSIVINCAA 114
                    79************************9998899****************99999887633333334899******9 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.2e-05      0.16     111     188 ..     125     200 ..     121     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.2e-05
     DUF1776 111 iplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrph 188
                 ++ +++a+++n ++l  + +l a+lp l +  ++   + v   s++++l +++ +  a    alsal ++L+ elr+ 
  KKY17743.1 125 LSANNFAKTINANFLGAVNILRAFLPGLIE--SETGGTFVTVSSVLAHLCPANLSDYAASKAALSALHKSLAMELRQM 200
                 67899*********************9997..57888889999*********************************54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.79s 00:00:01.37 Elapsed: 00:00:02.13
# Mc/sec: 458.06
//
Query:       KKY17744.1  [L=812]
Description: putative peptidase family m13 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-99  334.2   0.1    2.4e-99  333.6   0.1    1.3  1  Peptidase_M13_N  Peptidase family M13
    1.9e-59  200.7   0.2    3.6e-59  199.8   0.2    1.4  1  Peptidase_M13    Peptidase family M13


Domain annotation for each model (and alignments):
>> Peptidase_M13_N  Peptidase family M13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.6   0.1  2.6e-103   2.4e-99       1     382 []     122     545 ..     122     545 .. 0.90

  Alignments for each domain:
  == domain 1  score: 333.6 bits;  conditional E-value: 2.6e-103
  Peptidase_M13_N   1 PCdDFYeyaCGnWlkehpipadkssygtfeelqeelekqlreilee..........kpsskedakavkkaktlYksCmdedaieklglkplldl 84 
                      PCdDF +yaCG+W+++h++  d+ss++t   ++e+ + +lr+ile+          +  ++++++++ k+k+ Y++Cm++d +++ gl+pl  +
       KKY17744.1 122 PCDDFDQYACGGWQQRHDLRPDQSSVSTAMLMDESSRTVLRHILEDssflnnitdlE-YADASKENFHKLKASYDACMNVDLLKEIGLAPLAAF 214
                      9************************************99*****8899999888844.44446679**************************** PP

  Peptidase_M13_N  85 lkelgg....lds................nwkdkfdllellaklrrygidilfslgvdpdpkdpsknvlyldqpg.lglpdreyylkerdekee 157
                      lk++++      +                  + + +l++++ +l++ g+d+l+ ++v++d++dp++n+l++++p+  glp+ eyy      +++
       KKY17744.1 215 LKSIDQkfiaG-NgprlasaapelrqrllRSNINANLTDVVQSLSSTGVDALVTFYVSADDRDPDNNILTISPPSsPGLPSLEYY------DDD 301
                      *****867751.24567777888888986556699*************************************98747********......345 PP

  Peptidase_M13_N 158 eileaykeylakllkllge.............ea....aelaeevvefekklakitldseerrdpeklynpmtlaelqklapqidwkaylsall 234
                      +i++ y++++a++lk   +             ++    ++l++ +vefe+klak+t ++++++d++ +ynp +++e q+++pq+++ +++s+l 
       KKY17744.1 302 DIVSDYTKVIANVLKYFSNstsslftttygdgTDlqgfDALVNSLVEFERKLAKVTPTTQQQEDVTYYYNPRSIDEAQEMFPQLSFSDIISTLS 395
                      7**************753334444444444441155668999**************9999999***************999***********65 PP

  Peptidase_M13_N 235 ertsssekvivtepeylkklskllaettpkrtlanYllwrlvrelapylsdefrdakfefyktlsgreer...prwkrCvsqvnsllgmalgrl 325
                       ++s ++kviv +p+y+++ s++l+  t  ++++++l w+++++++  ++d  ++  ++f+k l+g++++   +rwk+C+++v+s lg++l+++
       KKY17744.1 396 LDKSVPQKVIVGSPSYMRNASRILED-THEEIVHAFLTWKVIQSYSGIVDDAAVKTLKQFNKRLRGQDPDaepERWKTCIGTVDSQLGWILSNY 488
                      5558********************76.666**************************************6666569******************* PP

  Peptidase_M13_N 326 yvkkyfpeeskkdveemvedikeafkerlkeldWmdeetkkkAleKldamklkigyP 382
                      +v+ +f+eeskk  e++++dik++f ++l++++Wm+++ +++A++K++a+ +k+gyP
       KKY17744.1 489 FVDATFSEESKKFGERIISDIKTSFVNTLNKTSWMSASVREQAINKVAAIDVKVGYP 545
                      ********************************************************9 PP

>> Peptidase_M13  Peptidase family M13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.8   0.2     4e-63   3.6e-59       1     196 [.     607     807 ..     607     810 .. 0.96

  Alignments for each domain:
  == domain 1  score: 199.8 bits;  conditional E-value: 4e-63
  Peptidase_M13   1 NAyYqpeensivfpaailqppffdl.eypeavNyggiGaviaHEltHgfddqgvqfdkegnlaswltdedaeefkekakclieqfsevtepektk. 94 
                    NAyY    +si fpa+i+q p f++ ++p++  yg+ G+v +HEl+H+fd +g ++d++gn ++w+++   ++f++ka+c i+q+s++t p +   
     KKY17744.1 607 NAYYDLPGQSINFPAGIMQSPVFHPpSVPQYLAYGSFGSVSGHELSHAFDSTGRHYDQNGNFTDWWDNSTVNQFQTKAQCFIDQYSNFTVPGNNGe 702
                    9**********************96379**************************************************************988778 PP

  Peptidase_M13  95 ..avngaltlgEniADlggleiAyraykk.lksakeerlpelenltkdqlfFisyAqiwcekqsdeellrqllvdvHspaelRvngvlsnlpaFae 187
                      ++ng ltlgEniAD gg+++++ a+k+   s  ++ lp+l+++tkdqlfF+syA +wc k+++e+++  +  d+H+p   R++g+++n  +F+e
     KKY17744.1 703 elNLNGRLTLGENIADAGGVAASFAAWKRhELSDPDQLLPGLGHFTKDQLFFVSYASFWCGKTRKEAQVEAIYRDPHAPRFARIKGTMANSREFKE 798
                    9***************************9667888999********************************************************** PP

  Peptidase_M13 188 aFnckegsk 196
                    aF ck+ ++
     KKY17744.1 799 AFGCKKKEE 807
                    *****9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.71s 00:00:01.49 Elapsed: 00:00:00.92
# Mc/sec: 2656.62
//
Query:       KKY17745.1  [L=429]
Description: putative dimethylaniline monooxygenase (n-oxide forming) [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.1e-12   45.0   0.0    1.2e-10   41.2   0.0    2.0  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    5.4e-10   38.3   0.0    7.8e-10   37.8   0.0    1.2  1  FMO-like       Flavin-binding monooxygenase-like
    4.4e-09   35.9   0.0    1.3e-07   31.1   0.0    2.1  2  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    2.5e-08   33.5   0.0    3.4e-07   29.8   0.0    2.0  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0017   18.9   0.1     0.0048   17.4   0.1    1.8  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.058   13.8   0.0       0.11   13.0   0.0    1.5  1  NAD_binding_7  Putative NAD(P)-binding
       0.15   12.1   0.0       0.58   10.2   0.0    1.8  2  Shikimate_DH   Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   4.5e-14   1.2e-10      68     199 ..       5     141 ..       2     149 .. 0.88
   2 ?    1.5   0.0     0.057   1.5e+02     249     280 ..     241     273 ..     196     281 .. 0.59

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 4.5e-14
  Pyr_redox_3  68 spafslkeeklsrkealeYlrevaksfelp..iklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeek...lvkhyskvkefh 160
                   p+++ +e +++++e++ + r++ ++++l+   + +++V++v ++++g  +  + +  + + +i A+G  +  +++  pG+ek   +v+h+s+ + + 
   KKY17745.1   5 HPSIKWSEGYPTKDEIVTQIRQLWERYRLQdkTEFNHRVQKVYRDKQGRWIIDNPSHGRFDGIIAAIGSCGDAKMPTLPGQEKfkgQVCHSSQLD-CV 101
                  58899999*********************73367799***********99*99999**************************8644566666665.55 PP

  Pyr_redox_3 161 kyagqkvvViGgknSavDaAlelvrkga.eVtvvtrgsei 199
                  + +g+k+vV+Gg+ Sav+a    v++ga +++++ r++++
   KKY17745.1 102 DGKGKKIVVVGGGASAVEAVEFAVKAGAeRISILSRSDKW 141
                  9******************999999997358888888876 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.057
  Pyr_redox_3 249 tedgkkvevkddvvlatGyk.pdlsflkkslfe 280
                   + ++k+ + d +v+atG+k p+lsfl ++ fe
   KKY17745.1 241 GPGKQKLVEGDIIVMATGFKrPSLSFLPDEFFE 273
                  4444555556667777***63778999877766 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   3.1e-13   7.8e-10     139     359 ..      64     289 ..      16     308 .. 0.78

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 3.1e-13
    FMO-like 139 fdavmvctGhhvnphlplesfpGiekfkGqyfhsrdykepevfkgkrvlviGlGnsggdiave..lsrtaeqvllstrsGswvlsrvsdsGypwdmllv 235
                 fd ++   G    +++p  ++pG ekfkGq+ hs +    ++ kgk+++v+G G s+ + ave  +   ae++ + +rs  w++ r       +d+ll+
  KKY17745.1  64 FDGIIAAIGSCGDAKMP--TLPGQEKFKGQVCHSSQLDCVDG-KGKKIVVVGGGASAVE-AVEfaVKAGAERISILSRSDKWIIPRNP----FIDILLA 154
                 78888888888888888..69****************99887.9**********99987.555114456899************9953....3577765 PP

    FMO-like 236 trfksllknilptalsnwlvekklnkrfnhenyglkpkkralakepvlndelparilaGavk.vkssvkeltetsaifedgtv...........eedid 322
                   f+ + +++l + + + ++ k + + ++    + +  ++  +  p++n ++ ++i  G+ + ++++++e+++  + f++ ++             + d
  KKY17745.1 155 --FNIFGQETLLSWIPESILRKFFYRDLKDIAPSEESGEGLFMSTPMVNSDILEQIRRGKAEwLRGDIEEVEKDGVQFNHRAQgvpkggpgkqkLVEGD 251
                 ..666666666666666666666666666666677777899999***************98648**************975431111111111133569 PP

    FMO-like 323 vvifatGytf.afpfleeslvkveknkvslykkvfpan 359
                 ++++atG+   +  fl +   +   +    y +vfp+ 
  KKY17745.1 252 IIVMATGFKRpSLSFLPDEFFEEPYQPPNWYIQVFPPS 289
                 99999999743788999988888888888889999875 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   5.2e-11   1.3e-07     104     226 ..      28     139 ..       3     146 .. 0.79
   2 ?    2.7   0.0     0.022        57     322     342 .]     241     261 ..     217     261 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 5.2e-11
  K_oxygenase 104 WvasqleeqvrfgeeveevepdeeeeeelltveskdaegeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGq 201
                  W   +l+++ +f+++v++v  d++    ++ +++  ++g+ + + a    +g  + +k+P++  + + k +v+Hss++        ++k+i+VvG+G 
   KKY17745.1  28 WERYRLQDKTEFNHRVQKVYRDKQG---RWIIDN-PSHGRFDGIIA---AIGSCGDAKMPTLPGQEKFKGQVCHSSQLDCVD---GKGKKIVVVGGGA 115
                  677799**************99975...577876.45665555554...455557777777776666679*******98876...89*********** PP

  K_oxygenase 202 Saaeifedllrrqkkvelklvtrse 226
                  Sa e +e +++  +   +++++rs+
   KKY17745.1 116 SAVEAVEFAVKAGA-ERISILSRSD 139
                  ******99988765.6888888876 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.022
  K_oxygenase 322 esgeeetlevdavvlATGYrr 342
                    g+++ +e d++v+ATG++r
   KKY17745.1 241 GPGKQKLVEGDIIVMATGFKR 261
                  45788999**********985 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.3e-10   3.4e-07      75     176 ..      36     140 ..       5     148 .. 0.72
   2 ?    1.5   0.0     0.056   1.4e+02      92     111 ..     235     261 ..     183     279 .. 0.61

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.3e-10
                  CEEEEESCEEEEETEEEC.....TCEEEEEESEEEE---E..EE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT CS
                  xxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  75 vvkidpgkkkvklekkke.....gdeekiaydklvlAtGs..sprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklg 165
                  ++++ +  +kv   k  +     ++  +  +d ++ A+Gs   ++ +++pG ++  g   + ++s +    + + k+ivvvGgG+ +vE   ++ k+g
   KKY17745.1  36 KTEFNHRVQKVYRDK--QgrwiiDNPSHGRFDGIIAAIGScgDAKMPTLPGQEKFKG---QVCHSSQLDCVDGKGKKIVVVGGGASAVEAVEFAVKAG 128
                  333333333333322..12344455567789********88899999*****55554...6699999999999999*********************9 PP

                  -E.EEEEESSSS CS
                  xx.xxxxxxxxx RF
  Pyr_redox_2 166 ke.vtlveardr 176
                  +e + ++ + d+
   KKY17745.1 129 AErISILSRSDK 140
                  997999888776 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.056
                  C.......TCEEEEEESEEEE---EEE CS
                  x.......xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  92 e.......gdeekiaydklvlAtGssp 111
                  +       g+++ ++ d +v+AtG++ 
   KKY17745.1 235 QgvpkggpGKQKLVEGDIIVMATGFKR 261
                  122333346666777788888888744 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.9e-06    0.0048       1      34 [.     107     141 ..     107     147 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.9e-06
                 EEEEECSSHHHHHHHHHHHHTT.SEEEEEESSSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelg.kkVtvversdkl 34 
                 k+vvvGgG +++E+ +++ + g  +++++ rsdk 
  KKY17745.1 107 KIVVVGGGASAVEAVEFAVKAGaERISILSRSDKW 141
                 79****************99994588*****9985 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.2e-05      0.11       4      40 ..     102     139 ..     100     226 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.2e-05
  NAD_binding_7   4 dlkgkkvlvvGgGevAarkvrklleagak.vtvvapev 40 
                    d kgkk++vvGgG  A + v+  ++aga+ + +++   
     KKY17745.1 102 DGKGKKIVVVGGGASAVEAVEFAVKAGAErISILSRSD 139
                    6689***********************74388888775 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00023      0.58      10      45 ..     103     138 ..      95     141 .. 0.91
   2 ?   -1.5   0.0      0.96   2.5e+03      72      88 ..     246     262 ..     244     265 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00023
                   .TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESS CS
  Shikimate_DH  10 lkekkvlliGaGemaelvakhLlakgvkkvvvaNRt 45 
                    k+kk++++G G  a ++++  +++g++++ ++ R+
    KKY17745.1 103 GKGKKIVVVGGGASAVEAVEFAVKAGAERISILSRS 138
                   5789******************************98 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.96
                   HHHT-SEEEE-SSSSS- CS
  Shikimate_DH  72 llaeadvvisataseep 88 
                    l e d++++at+ + p
    KKY17745.1 246 KLVEGDIIVMATGFKRP 262
                   67899*******98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.44s 00:00:01.07 Elapsed: 00:00:00.54
# Mc/sec: 2369.72
//
Query:       KKY17746.1  [L=598]
Description: putative pci domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.014   15.9   0.0        0.6   10.7   0.0    2.5  2  PCI       PCI domain


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.014   2.5e+02       5      57 ..     326     383 ..     322     411 .. 0.75
   2 ?   10.7   0.0   3.3e-05       0.6      74      98 ..     481     510 ..     462     513 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.014
                 HHHHHHHHTSHHHHHHHHHHH...HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH..C CS
         PCI   5 dllkalrsgnlsgfseelkdl...eeelladdglaqllesLekkvrerllrqvsk..i 57 
                  l + + +g++ gf+++l      ++ +l+ + l ql +++e  v++ l+r+v+    
  KKY17746.1 326 PLCRLISKGDIIGFRKFLDLDspqSSWFLKFRILLQLRDRCEVLVWRSLVRRVFVvaG 383
                 677778888888888888543565566677778888****************997663 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 3.3e-05
                 H.....HHHHHHHHHHHHTTSSSEEEETTT CS
         PCI  74 v.....devEkilvklIrdgeirakidqes 98 
                 +     +e+E+il++lI ++++++ i + +
  KKY17746.1 481 SqiptiSEIESILSSLIQQDLLNGFITHDN 510
                 0444589*******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.48s 00:00:01.10 Elapsed: 00:00:00.61
# Mc/sec: 2974.92
//
Query:       KKY17747.1  [L=720]
Description: putative sh3 domain containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-10   38.4   0.0    1.5e-09   37.6   0.0    1.4  1  SH3_9            Variant SH3 domain
    3.1e-08   33.1   0.0    5.3e-08   32.3   0.0    1.4  1  SH3_1            SH3 domain
    3.6e-05   23.4   0.0    6.4e-05   22.6   0.0    1.4  1  SH3_2            Variant SH3 domain
  ------ inclusion threshold ------
      0.081   12.9   0.3      0.081   12.9   0.3    2.4  2  Gram_pos_anchor  LPXTG cell wall anchor motif
       0.29   11.3   3.3       0.53   10.5   3.3    1.3  1  DUF3792          Protein of unknown function (DUF3792)


Domain annotation for each model (and alignments):
>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   4.1e-13   1.5e-09       4      48 ..     452     498 ..     449     499 .. 0.94

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 4.1e-13
       SH3_9   4 pyepreddeLsLqrGDvitvieesedgWlegsl..tGrtGlvPanyv 48 
                 +++p  +deL+L +G+v+++++e++dgW ++++   ++ G++P++++
  KKY17747.1 452 DFKPSMEDELELKAGQVVRILHEYDDGWSLCIRldRSQQGVCPRTCL 498
                 89******************************768**********97 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   1.5e-11   5.3e-08       2      47 ..     449     494 ..     448     495 .. 0.95

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 1.5e-11
                 ESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEE CS
       SH3_1   2 AlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliP 47 
                 +  D++++++dEL +k G v+ +l++ +dgW  + + ++ ++G  P
  KKY17747.1 449 VQLDFKPSMEDELELKAGQVVRILHEYDDGWSLCIRLDRSQQGVCP 494
                 678****************************************988 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.8e-08   6.4e-05       3      55 ..     448     499 ..     446     500 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.8e-08
                 EESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE..CCCEEEEEGCGEE CS
       SH3_2   3 raiedyvgedkseLsfkkGdvikvlslgskdsdgwwegev..gGrvGlfPsslve 55 
                 r+  d++++ ++eL++k+G+v+++l    + +dgw ++ +  + ++G+ P+++++
  KKY17747.1 448 RVQLDFKPSMEDELELKAGQVVRIL---HEYDDGWSLCIRldRSQQGVCPRTCLS 499
                 78889********************...66666999**88866667******986 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   2.2e-05     0.081      21      42 ..     234     255 ..     230     256 .. 0.74
   2 ?   -1.5   0.7       0.7   2.5e+03      21      32 ..     386     396 ..     382     400 .. 0.48

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.2e-05
                      XXXXXXXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor  21 taaGllallggllLlvkrRKke 42 
                      ++++++a+ g+l ++ k+++++
       KKY17747.1 234 LLVAAMAAGGALWFYAKKKREN 255
                      5677788888888888888887 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.7
                      XXXXXXXXXXXX CS
  Gram_pos_anchor  21 taaGllallggl 32 
                       +aG +a++g++
       KKY17747.1 386 AVAG-AAAAGAA 396
                      3334.4444443 PP

>> DUF3792  Protein of unknown function (DUF3792)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.3   0.00015      0.53      10      85 ..     167     240 ..     160     251 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00015
     DUF3792  10 lialvitlilllilalllyftslsekvlsililiililsvfigGflagkkakkkgllnGllvGllyflillllsll 85 
                  +a v+t   +l+ ++l   ts s+++ s+ +++    ++  ++  +  k+ +kgl +G+ vG+++ ++l + +++
  KKY17747.1 167 KAAAVATTSSTLVSSILSATTSASDYSSSTSASLAASSASSTASSDS-SKSVSKGLSSGAKVGIVIAVLL-VAAMA 240
                 5788999999********9**99999888887777777666666665.67789************88884.33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2082  (0.116125); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                       131  (0.0073066); expected 17.9 (0.001)
Passed Fwd filter:                        49  (0.002733); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.29u 0.48s 00:00:01.77 Elapsed: 00:00:00.65
# Mc/sec: 3353.84
//
Query:       KKY17748.1  [L=608]
Description: putative snornp assembly factor naf1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-45  153.4   0.7    7.4e-45  152.5   0.7    1.5  1  Gar1        Gar1/Naf1 RNA binding region
  ------ inclusion threshold ------
        0.5   10.2   2.1        1.5    8.7   0.0    2.2  2  CSRNP_N     Cysteine/serine-rich nuclear protein N-terminus
        2.4    7.8  17.1        1.1    9.0   7.8    2.2  2  Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
        3.2    6.4   4.0          5    5.8   4.0    1.2  1  API5        Apoptosis inhibitory protein 5 (API5)
        7.6    6.6  17.6        0.9    9.6   2.0    2.3  2  YL1         YL1 nuclear protein


Domain annotation for each model (and alignments):
>> Gar1  Gar1/Naf1 RNA binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.5   0.7   2.1e-48   7.4e-45       5     153 ..     194     341 ..     190     342 .. 0.96

  Alignments for each domain:
  == domain 1  score: 152.5 bits;  conditional E-value: 2.1e-48
                 S----TT----TTS-EEEEEEEEEEETTEEEEEE---S--B--BTT-EEEETT--EEEE--EEES-SSS-EEEEE--GGHHHHHHHT.TTTSEEEEE-X CS
        Gar1   5 ppvekedieigppeevleiGtvssivenevviksttsgekkvldfnsilflenktqiGkVdEifGpvnepyysVklnsseeikaksf.kvgdkvyiapd 102
                 + ++k+di ++p++ ++e+G+v+ +ve++v+ik + sge++vl+ +s+l+++++ ++G V E++G+v++p+y+V+++++e i+++++ ++g+ vy++ +
  KKY17748.1 194 EVIPKPDIVVTPEMVIEELGSVEAAVEGTVLIKGKVSGEYQVLESGSVLCTKDRIVLGVVAETLGRVEQPLYTVRFTNDEAIQEAGLaEKGTPVYYVQQ 292
                 567899******************************************************************************776489********* PP

                 ..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        Gar1 103 lplerfllteelkkkkgpdasnendeElpeeevefsdDekeaeakkkkkgk 153
                   +++f++t++lk  kg+dasn ndeE+ +ee efsdDe+eae+k++kk++
  KKY17748.1 293 --HSTFVFTQPLKGLKGSDASNVNDEEIGDEEREFSDDEAEAEWKRQKKEG 341
                 ..**********************************************986 PP

>> CSRNP_N  Cysteine/serine-rich nuclear protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00041       1.5      69     130 ..     110     169 ..      47     183 .. 0.71
   2 ?    0.5   0.5      0.13   4.7e+02      43     101 ..     323     384 ..     292     402 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00041
     CSRNP_N  69 eklealklklsssdlleeeeeealevddisdedldseaelddylflqplstkkrralLraaG 130
                 + +++ + + + +++  e+ +++++ dd+s++d d+++e  dy +l   ++ + r+l++ aG
  KKY17748.1 110 QDSQNGEAEWEVDSSPYESSSDSSSSDDSSSDDSDEDEEDLDYAMLD--PAEQARILMQDAG 169
                 33333444444444455555666678899999999555555555555..6789999999998 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.13
     CSRNP_N  43 kkftlaehaieqkrlrreklrerlkeeklealklk...lsssdlleeeeeealevddisded 101
                 ++f+ +e ++e kr+++e  ++r+  ++  + +++   ++ ++ +   ++++ + dd++ ++
  KKY17748.1 323 REFSDDEAEAEWKRQKKEGRQSRRDAKNGAENATRpkkMNFNGPSMYDDSTEINYDDVETKE 384
                 55555566666665555444443333322222222111334444444444444444443333 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   7.8    0.0003       1.1     100     147 ..     104     149 ..      66     163 .. 0.49
   2 ?    4.0   1.8    0.0098        35      53     120 ..     320     384 ..     287     413 .. 0.49

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0003
                 --------..-------------------------------------- CS
  Cwf_Cwc_15 100 rkeelleeareidaddedseeeeeeeeeesdddsdsdsdddddedeta 147
                  + el++++++ +a+ e +++  e+  ++++++sd++s+dd+dede++
  KKY17748.1 104 AEGELVQDSQNGEAEWEVDSSPYES--SSDSSSSDDSSSDDSDEDEED 149
                 2223444433333333333222222..223333333334444444433 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0098
                 -HHHHHHHHHHHHHHHHH---------------------------------......----..----------- CS
  Cwf_Cwc_15  53 dlraeLeeaeaeakakkrkkaeleaeeeeekekkeeeeeeeeeeakrrkee......lleeareidaddedsee 120
                 d  +e  + eaea+ k++kk++ ++        ++++++   e+a r k+       ++++++ei+ dd +++e
  KKY17748.1 320 DEEREFSDDEAEAEWKRQKKEGRQS--------RRDAKNG-AENATRPKKMnfngpsMYDDSTEINYDDVETKE 384
                 2222222222222222222211111........1111111.112222221111122244444555555555443 PP

>> API5  Apoptosis inhibitory protein 5 (API5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   4.0    0.0014         5     429     519 .]     329     431 ..     317     431 .. 0.61

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0014
        API5 429 kvnlSwkeakkksaaattaa....agakrkaaitfngs...esskaakkargekkqrqqyvppsgklsnkane......ssgkgrgsgsrgrgrg..gg 512
                 + +  wk +kk+  ++++ a    + a r+++++fng    ++s++ +    e k+ + y+p   + sn  +       +sg+++  ++ grg+g   g
  KKY17748.1 329 EAEAEWKRQKKEGRQSRRDAkngaENATRPKKMNFNGPsmyDDSTEINYDDVETKEDDGYTPLA-RPSNLHEMmsqpglASGGKQ--DHAGRGSGynRG 424
                 556679997777666665556777889999*****99889855555555566666666766543.33332222222434444444..455555543388 PP

        API5 513 grGrGrG 519
                 grGrGrG
  KKY17748.1 425 GRGRGRG 431
                 8999887 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   8.0     0.037   1.3e+02      29      68 ..     110     149 ..      92     187 .. 0.63
   2 ?    9.6   2.0   0.00025       0.9      54     109 ..     315     360 ..     268     469 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.037
                 xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  29 aEeedDe.efeseeeeeeeensDsdfdsdeedeesdeeede 68 
                 ++ ++ e e+e +++  e++ sDs  ++d++ ++sde+e++
  KKY17748.1 110 QDSQNGEaEWEVDSSPYESS-SDSSSSDDSSSDDSDEDEED 149
                 45455555888887776654.66444222222222233322 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00025
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  54 dsdeedeesdeeedeeegekelerqerkkrkkekkkrkaqkkkskkkkkkqkkkkk 109
                 d++ +d  ++ e  ++e e+e +rq+++ r++ ++ +k+ ++++       ++ kk
  KKY17748.1 315 DEEIGD--EEREFSDDEAEAEWKRQKKEGRQS-RRDAKNGAENA-------TRPKK 360
                 222222..334444556777777888888822.23333222222.......22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       891  (0.049696); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.51s 00:00:01.00 Elapsed: 00:00:00.68
# Mc/sec: 2713.07
//
Query:       KKY17749.1  [L=499]
Description: putative alpha-mannosyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-72  242.7  21.1    1.5e-37  129.8   8.3    2.0  2  Glyco_transf_22  Alg9-like mannosyltransferase family
  ------ inclusion threshold ------
       0.19   11.0   0.0       0.32   10.3   0.0    1.3  1  NHase_alpha      Nitrile hydratase, alpha chain


Domain annotation for each model (and alignments):
>> Glyco_transf_22  Alg9-like mannosyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3   5.0   2.6e-38   2.3e-34       2     146 ..      52     193 ..      51     212 .. 0.90
   2 !  129.8   8.3   1.7e-41   1.5e-37     208     417 .]     216     444 ..     192     444 .. 0.85

  Alignments for each domain:
  == domain 1  score: 119.3 bits;  conditional E-value: 2.6e-38
  Glyco_transf_22   2 ifllllalrlllalltqtsfdpDEffqslEvahklvfgkgtltWEyspkygiRSylfllllalpyrllaelvadskiavlyapRlllallsali 95 
                      +fl+++  +++ al   +  d+DE+f+++E++h+l+ g+g++tWEysp+ygiRS+l++ll+a+p +l a +  + k a +y++R++lal++a +
       KKY17749.1  52 AFLVCCLSHVVAALYAPIQ-DCDETFNYWEPTHYLTHGYGLQTWEYSPEYGIRSWLYVLLHAVPQKL-ASFAVKHKTAEFYLIRITLALVCAAS 143
                      6999999************.********************************************965.6678889999**************** PP

  Glyco_transf_22  96 dyylfravcrkygseiakialllslsswglfvfstrtfsnslemlltsial 146
                      + +l+++++r+++ +ia i+ ll  ++ g+f++s++ +++s++m+  +   
       KKY17749.1 144 EAKLVSVISRTLNPRIA-ILYLLVTFTPGMFYASVAYLPSSFAMICAIQGA 193
                      ***************76.5666677889****************9887655 PP

  == domain 2  score: 129.8 bits;  conditional E-value: 1.7e-41
  Glyco_transf_22 208 fliialvllvlllvlvlviliDslfYgkfvftplnflkyNvl...snlsslyGvhPwyfYllqnlpnilgvlllavllgllvllsr........ 290
                       ++++ +++  l+v++l ++i   fY+++v++ +n+++yNv+    ++++++Gv+Pw fYl +  +n+++ + la+l+++lv l+         
       KKY17749.1 216 CRRFLDGTVRSLIVVGLELAINAFFYHEIVIAAWNIVFYNVFsssDRGPNIFGVEPWDFYLKNLTLNFNIWFPLALLAAPLVFLLWcfrshapt 309
                      47888999999999****************************887789**********************************966677889998 PP

  Glyco_transf_22 291 ..kvsrlllllltilltLlvysllpHKElRFllpvlPlillsaavlltrls..............resakvskklsllvllllfnvvlalllgl 368
                         + r    +++++ +Ll++ ++pHKE+RF++p +P++ l+aa+++  +                 s+++ +  ++ v+ll ++++  ++lg+
       KKY17749.1 310 qqTLLRTTIFISPFFFWLLIFNFQPHKEERFMYPAYPFLALNAAIAMHVILsvlgsanprtllgkLPSWLKLQI-AFSVVLLSVAISSLRILGT 402
                      854444788999***********************************999989999988877765555555555.9999999999999****** PP

  Glyco_transf_22 369 vhqagvillvevmseleetkrknrkekketssvyvlkecyrtPsssylh 417
                      +  ++++l v    +le++ +     +k+ ++++++ke+yr+Pss +l+
       KKY17749.1 403 ITAYNAPLHV--YRALEAEGM-----AKSGDTICLGKEWYRFPSSYFLP 444
                      *******544..445555553.....46899**************9986 PP

>> NHase_alpha  Nitrile hydratase, alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   3.6e-05      0.32      88     114 ..     355     381 ..     346     412 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3.6e-05
  NHase_alpha  88 vhnlvvctLCscypravLGlpPeWyks 114
                    +++   L s+ pr++LG  P+W k 
   KKY17749.1 355 AMHVILSVLGSANPRTLLGKLPSWLKL 381
                  56899*******************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.53
# Mc/sec: 2808.46
//
Query:       KKY17750.1  [L=191]
Description: hypothetical protein UCRPC4_g05383 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.052   13.6   0.3      0.077   13.0   0.3    1.2  1  FmdE       FmdE, Molybdenum formylmethanofuran dehydrogenase 
       0.34   10.5   6.8       0.43   10.1   6.8    1.1  1  PPP4R2     PPP4R2
       0.35   10.8   5.1       0.53   10.2   5.1    1.2  1  FAM60A     Protein Family FAM60A
       0.69    7.8  10.6       0.87    7.5  10.6    1.1  1  Dicty_REP  Dictyostelium (Slime Mold) REP protein


Domain annotation for each model (and alignments):
>> FmdE  FmdE, Molybdenum formylmethanofuran dehydrogenase operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   1.7e-05     0.077      37     128 ..      64     162 ..      44     164 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.7e-05
                 EES-STCHHHHHHHHCS--TTTTSEEE--SS-SEEEEEET......TT-EEEEEEE-......CCTHHHHHHHCCT--.GGGS-HHHHHHHHHHHHHHH CS
        FmdE  37 ivetdsCldDAiqvltgctlGkgnlivmdygkkaltfkkr......ktgkavrlklk......eelpelreklakgka.keekeeeeleeeleeaikki 122
                 iv t+    D++ v tg++ G g+  v +      t+k        k   +             ++++++ k+ +g+  k++ +++++e + ++++++ 
  KKY17750.1  64 IVCTTVGGGDGVNVSTGASTGTGTAAVTHSSNGSGTVKVSrnkkanK---KTS---TttttttADTNKIHHKVQSGRItKRAIARRRMEGKDHQYGDNH 156
                 555556678*******************9665555555553333331...111...12223557899********999788888888888888888887 PP

                 HHS.HH CS
        FmdE 123 lnapee 128
                   +++e
  KKY17750.1 157 NHNEDE 162
                 777665 PP

>> PPP4R2  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   6.8   9.6e-05      0.43     197     280 ..     104     185 ..      73     189 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 9.6e-05
      PPP4R2 197 elspfikeidsimsvnlgfedeeekeeddneseesaseseeiteekdesvkvee..........................kdddeeddeedtdyveeee 269
                 +                            n++ +++++++++t+++d +++  +                          ++++e+++++d+d +  ++
  KKY17750.1 104 R----------------------------NKKANKKTSTTTTTTTADTNKIHHKvqsgritkraiarrrmegkdhqygdnHNHNEDENDNDNDEEGMQV 174
                 1............................2223333333333333333333333555555555666666666666666555677777777777777799 PP

      PPP4R2 270 ddesedddeee 280
                 ++e + dd+ee
  KKY17750.1 175 KKEYFGDDDEE 185
                 99999999986 PP

>> FAM60A  Protein Family FAM60A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   5.1   0.00012      0.53      76     156 ..      90     169 ..      84     188 .. 0.47

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00012
      FAM60A  76 vvdaragpglkslaklkkkekke..sskkieekfekklkkkkklkktkakasdasssereaspassdsasedsdesedeeekk 156
                 v  +  g g+ ++++ kk +kk+  +++++  +++k+++k +  ++tk++ +     ++e + ++   +++++++++d+++ +
  KKY17750.1  90 VTHSSNGSGTVKVSRNKKANKKTstTTTTTTADTNKIHHKVQSGRITKRAIARR---RMEGKDHQYGDNHNHNEDENDNDNDE 169
                 566778888888888777744442234444555556666655555544444333...22222222221122221111111111 PP

>> Dicty_REP  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  10.6   0.00019      0.87     239     318 ..      93     168 ..      75     185 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00019
   Dicty_REP 239 sentq.rensqpskeknkttttttttttttsqartrkrkaidddklsenqakekkknskksdddpqsdfskkssrksgslk 318
                 s+n +   +++ +k+ nk+t ttttttt +++++ +k ++    ++++    +  ++ ++ d++ +++++++ ++++++ +
  KKY17750.1  93 SSNGSgTVKVSRNKKANKKTSTTTTTTTADTNKIHHKVQSG---RITK--RAIARRRMEGKDHQYGDNHNHNEDENDNDND 168
                 44443145667788888888888888888888888777743...3444..3344444444455544444444333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1738  (0.0969379); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 1291.56
//
Query:       KKY17751.1  [L=2219]
Description: putative sensor histidine kinase response [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-32  111.7   0.7    9.3e-32  109.9   0.1    2.3  2  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    3.6e-21   75.4   0.1    1.3e-20   73.6   0.1    2.1  1  Response_reg  Response regulator receiver domain
    1.1e-17   63.9   0.8    1.2e-16   60.5   0.0    3.2  2  HisKA         His Kinase A (phospho-acceptor) domain
    4.3e-16   59.8   0.8      2e-15   57.6   0.0    2.6  2  AAA_16        AAA ATPase domain
    2.2e-10   41.0   0.0    5.9e-10   39.6   0.0    1.8  1  GAF_2         GAF domain
    5.6e-07   29.2   0.0    1.1e-06   28.2   0.0    1.5  1  Pkinase       Protein kinase domain
    8.2e-06   25.4   2.0      0.061   12.7   0.0    3.1  3  TPR_MalT      MalT-like TPR region
    1.6e-05   25.5   0.0    4.3e-05   24.2   0.0    1.8  1  GAF           GAF domain
    1.8e-05   24.6   0.1      4e-05   23.4   0.1    1.6  1  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik
    5.6e-05   22.6   0.0    0.00011   21.6   0.0    1.4  1  Pkinase_Tyr   Protein tyrosine kinase
  ------ inclusion threshold ------
      0.017   14.4   0.0      0.033   13.4   0.0    1.4  1  KAP_NTPase    KAP family P-loop domain
      0.086   12.8   0.0       0.36   10.7   0.0    2.1  2  NACHT         NACHT domain
       0.59    9.8   1.8        1.4    8.6   1.8    1.6  1  DUF2981       Protein of unknown function (DUF2981)


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       5.1     7e+03      48      94 ..    1513    1583 ..    1467    1594 .. 0.59
   2 !  109.9   0.1   6.7e-35   9.3e-32       1     110 [.    1777    1892 ..    1777    1894 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.1
                  SSTTHHHT.....................GTCS..TTCH..HCSTCHTSTSSSH.HHHHHHHHHH.HTTTEEEE CS
   HATPase_c   48 Gipkedlk.....................klfe..kfsq..ddstkrggggtGl.Glsivkklve.lmgGeiwv 94  
                  Gip  d++                     ++ +  +fs+  d++ +r+ +g+ + Gl i ++  + lmg  i+v
  KKY17751.1 1513 GIPFGDVDdlvaqqithyilrfketvfvhNVLDdeRFSSvsDAYIARNPSGRSIiGLPIIQA--DhLMG-VIHV 1583
                  44444444555555555555555555555444446788887777788876666449999873..42333.5555 PP

  == domain 2  score: 109.9 bits;  conditional E-value: 6.7e-35
                  EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE.....EETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHH.HTTT CS
   HATPase_c    1 gdekrLrqiisnlvdNavkfatkageieveika.....seddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklve.lmgG 90  
                  gd+ rL+q++ nl++N++kf t +g+i+   k+     ++ ++++sv+D+GiGi+ke+l +lf++fsq d+st+r++gg+GlGlsi+k+++e lmgG
  KKY17751.1 1777 GDPVRLHQVLMNLLSNSAKF-TAKGSITTAAKVlsqskDKIKVRVSVQDTGIGITKEQLSRLFQPFSQaDNSTQRSYGGSGLGLSICKAMIEdLMGG 1872
                  799*****************.999999998888866443389999********************************************6666**** PP

                  EEEEEEETTTEEEEEEEEES CS
   HATPase_c   91 eiwvesepgrGttftftlpl 110 
                  +i++esepg Gtt+ f l l
  KKY17751.1 1873 KISMESEPGVGTTVSFVLTL 1892
                  *************9998765 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.1   9.7e-24   1.3e-20       1     111 [.    1947    2065 ..    1947    2066 .. 0.94

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 9.7e-24
                    EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCSSSEHHHHHHHHHHCT....TTSEEEEEESSTSHHHH CS
  Response_reg    1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek.....vdlillDinmpgmdGlellkeireed....pelpviiltahseeeda 86  
                    v+i++D+p+++++  +++++ g+  +++++dgk+ale l++ +     ++l+l+D++mp mdG++++k ir+++    +++ +i++ta +   d+
    KKY17751.1 1947 VCIAEDNPINQKIAISFVKKMGL-YCEAFNDGKQALEALQKASkagspFHLVLMDCQMPVMDGYDATKAIRADQdenvRDVLIIAMTASAIRGDR 2040
                    79*********************.***************988889999**********************998877777799************* PP

                    HHHHHCTESEEEESSG-HHHHHHHH CS
  Response_reg   87 vealkagaddflsKpfdpeeLlkal 111 
                    +++l+ag++ +l+Kp++ + L ++l
    KKY17751.1 2041 EKCLEAGMNNYLAKPVRATVLNSML 2065
                    ****************999887765 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       1.1   1.4e+03      24      57 ..     782     812 ..     779     833 .. 0.74
   2 !   60.5   0.0   8.5e-20   1.2e-16       2      66 ..    1667    1730 ..    1666    1731 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.1
                 HHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHH CS
       HisKA  24 aeaLkregklteelkeyletiesearrldhlved 57 
                 a+aL+r   + ++ k+ + ++ +++r+ ++l++ 
  KKY17751.1 782 AQALMR---YGDMEKRDFYSLAQHIRQAQQLIKK 812
                 788888...6677777777777777777777764 PP

  == domain 2  score: 60.5 bits;  conditional E-value: 8.5e-20
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA    2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66  
                  ++ fla+v+HELrtPL++++g++e+Lk + +l+ e++ y ++i+ +a+ l+ +++d+Ld+s++ea
  KKY17751.1 1667 RSIFLANVSHELRTPLNGVIGMSELLKGT-PLDREQEGYADSIRLCADSLLVVINDILDYSKLEA 1730
                  677***********************996.99999999*************************98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.6   3.6e+03       3      21 ..     208     226 ..     206     232 .. 0.87
   2 !   57.6   0.0   1.5e-18     2e-15      22     161 ..     349     545 ..     341     552 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.6
      AAA_16   3 vGReeeleqLlsalervrs 21 
                 +GR +e++++++++er+++
  KKY17751.1 208 FGRHDERKKITNLVERAHR 226
                 8**************9876 PP

  == domain 2  score: 57.6 bits;  conditional E-value: 1.5e-18
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala.............. 106
                 gr+e++++sG++G+GK+ l+++++ ++ +++ +f+ +k+d+  +  p+ +l +a+   +llrq+ +e  ++ + +++e ++ +l+              
  KKY17751.1 349 GRCEVLVISGAQGSGKTHLIQSVQ-PIIRKHSYFTMTKFDRA-RPSPFEPLMRAI-S-SLLRQIFSE--KDVATPYHESIRNSLGpvwgilrvmlglpe 441
                 7889********************.677777**********9.999*********.6.9******99..55799999*9******************** PP

      AAA_16 107 ..............................................avpelagaea............srllellkrllallsrderplvlvlDdlqwa 147
                                                                                      r+ ++  + ++ ls+ ++ l ++lDd++ a
  KKY17751.1 442 nllarstedyssatkqlpskllkhdvltmesfssrsgtssaalglgR--------QdflkgsnpgkggIRFMNTYLDVIRILSS-GKLLCICLDDFHAA 531
                 ************99999999999999999999777777666666662........0444444446666***************9.666*********** PP

      AAA_16 148 deaslqllaaLlrl 161
                 de+sl+l ++++r+
  KKY17751.1 532 DEESLELVSNIVRA 545
                 ********999987 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   4.3e-13   5.9e-10       4     135 ..    1462    1607 ..    1459    1609 .. 0.80

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 4.3e-13
                  HHHHHHHHHHHHHH.S.S...EEEEEEE-TTS-.EEEE........EEEES-TTSTT-S-B---TTHHHHHHHHTS-EEES-GGG-S-HHHHH.... CS
       GAF_2    4 leelldlvldelve.l.g.aalgyillvdddgg.lrla........awgeaeeefgaaldrplgeglvgealrtgrpvilndleedpdkkglp.... 84  
                  ++ ll+++++ ++e + g a++  i++  +d+g   +a        ++++a++  ++ +d+ +++ ++ ++lr ++ v+++++ +d++ ++      
  KKY17751.1 1462 IDKLLSRMTSIILEsVgGqADFIAIVIESEDNGwC-VAasgdnergVRTYADGIPFGDVDDLVAQQITHYILRFKETVFVHNVLDDERFSSVSdayi 1557
                  7899********99888789988888877777742.332455555566677777777776667999****************877777776665777 PP

                  HHHHTT--EEEEEE-TTS---EEEEES......--HHHHHHHHHHHHHHHH CS
       GAF_2   85 aghaglrsflavPlisegrvvGvlnlyankppafdeedlelLeelaeqiai 135 
                  a+ +  rs++++P+i+ ++++Gv+++    p++f++++l +L++l +q++i
  KKY17751.1 1558 ARNPSGRSIIGLPIIQADHLMGVIHV-EGAPNSFTQRNLLVLKLLTNQVSI 1607
                  888888888*******889******8.789999****************98 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0     8e-10   1.1e-06     161     263 ..      77     172 ..      12     173 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 8e-10
                 GGGS-HHHHTTSCB..SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHH CS
     Pkinase 161 seYlAPEvlkeney..skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaee 257
                  +Y+APE  ++  +  ++ +D++slG++ly ++tgkp  +g++  e v+k l+   +i ++       ++++++ ++ + +++ k+ ++ + +R+    
  KKY17751.1  77 LQYMAPEQTGRLAVepDARSDIYSLGILLYHMFTGKPAVEGSTALEIVQKVLNG--RIPWV-------SNHREDAPKVVSRIIAKMTARAMDERYNSIT 166
                 58*******665544599**********************77777766666666..45555.......4667888999999999999999999999888 PP

                 HHTSGG CS
     Pkinase 258 llqhpy 263
                  ++h++
  KKY17751.1 167 GVKHDF 172
                 888887 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.31   4.3e+02      59     112 ..     799     853 ..     773     859 .. 0.79
   2 !   12.7   0.0   4.4e-05     0.061     224     307 ..     850     933 ..     842     935 .. 0.78
   3 !   10.2   0.0   0.00025      0.35      66     113 ..    1272    1319 ..    1244    1327 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.31
    TPR_MalT  59 Alqalqeaeklarqadslhvallallqqae.ilvaqGrLheAletyeqalqlate 112
                   q+ ++a++l+++    ++ +  +l+q+  ++v+ G    Al+ ++ a+ l +e
  KKY17751.1 799 LAQHIRQAQQLIKKTVPERARYREVLSQSArQAVENGARPTALQYFKTAFDLLQE 853
                 568899999999888888887888887766699**************99999987 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 4.4e-05
    TPR_MalT 224 wleaaelpsdddnhfle..lel.rnlarvllalgrydeAlellerLlkaaeelgrvrslieiliLqalalqaqgreeeAlaaLeqAL 307
                 +l++ ++++++++ f+   l+l +++a +   lg++  Al+ll ++ + a+  +  +   + +iLq+++l a+g+++++++aL+  L
  KKY17751.1 850 LLQEDPWDEKRSDCFYAetLQLyIQVAELSFILGNSTVALSLLSEIFAHARTPECKT---RPWILQSRILAARGDSQASVKALTTSL 933
                 566666665555544330122226678888888******************999996...99*********************9876 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00025
    TPR_MalT   66 aeklarqadslhvallallqqaeilvaqGrLheAletyeqalqlateq 113 
                   ++l+ +a  ++  ++a+l  ae+   qGr   A+ +ye+a+ + + +
  KKY17751.1 1272 SIELWAKASDVNYLMWAMLLDAEMNNVQGRYGTAAGLYEDAIDHSQVH 1319
                  4567888888999*****************************998866 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   3.1e-08   4.3e-05      22     133 .]    1484    1609 ..    1461    1609 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 3.1e-08
                  EEEEE.EEETTEEE....CEEEEECC.........EEEETTSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEEEEEETTEEEEE CS
         GAF   22 valyl.pdydGlhy....dipqasrw.........lfmkngrgicgqvlatgqplvipdstpdprfaqynrrdllenmgirsslvvPlvndgelwGl 104 
                   a+ + ++ +G ++    d + + r          + + + + i  ++l+ ++++ ++++ +d+rf+   +  +++n+  rs +++P+++ ++l+G+
  KKY17751.1 1484 IAIVIeSEDNGWCVaasgDNERGVRTyadgipfgdVDDLVAQQITHYILRFKETVFVHNVLDDERFSSVSDAYIARNPSGRSIIGLPIIQADHLMGV 1580
                  5554443333432223332233333344444334444444666777**************9*******8666788888888**************** PP

                  EEEEE.SSSCSHHHHHHHHHHHHHHHHHHH CS
         GAF  105 lvlhn.psppftreelellqvladqvaval 133 
                  + +   p  +ft+  l +l+ l +qv+++l
  KKY17751.1 1581 IHVEGaPN-SFTQRNLLVLKLLTNQVSISL 1609
                  *****554.6****************9976 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   2.9e-08     4e-05       3      82 ..    1782    1862 ..    1780    1916 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.9e-08
  HATPase_c_3    3 lekAlaelvdNsldAdaen.....vkievnknrgktgeivieDdGkGmseeelknalrlatsskeakrkstslGkkGiGlklAsl 82  
                   l+++l+ l+ Ns    a+       k+  + +++ + +++++D G G+++e+l + +++ +++ +  ++++s+G  G+Gl  +++
   KKY17751.1 1782 LHQVLMNLLSNSAKFTAKGsittaAKVLSQSKDKIKVRVSVQDTGIGITKEQLSRLFQPFSQADN--STQRSYGGSGLGL--SIC 1862
                   57899*******995555455556899999988889**********************9999988..59**********5..443 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   7.7e-08   0.00011     106     249 ..       5     161 ..       1     167 [. 0.69

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 7.7e-08
                  HHHHHHHHHHHHHHHH.TTEEEST-SGGGEEEEE.TTEEEE-STTTHEETTTSSEE.......EETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHH CS
  Pkinase_Tyr 106 lsfalqvAkGmeyLes.kklvHrdlaarNvLlse.nkvvkisDfGLardiekddey.......vkkeeaklpvkWmapEslkekk..ftsksDvWsfG 192
                  l+fa+  A+ +e L++  + vH +++a     s+ + +v++   G   +  ++          +++ ++k  +++mapE   +       +sD++s G
   KKY17751.1   5 LDFAIGAAETLELLHHgARAVHGEIRADSFHFSReTGCVRLVNCGNGPKAFENMLSsegwvmlNQDVGGKNKLQYMAPEQTGRLAvePDARSDIYSLG 102
                  566666666666665523466666666666555414466666666443332211111223344677889999********99887336789******* PP

                  HHHHHHHTTSSGTTTTSHHHHHHHHHHTTEE...S-BBTTSBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr 193 vllwEiftlgespypglkneevleklkegkr...lekpekcpeelyelmkkcweedpeeR 249
                  +ll+ +ft g+  ++g ++ e+++k+ +g+     ++ e++p+ + +++ k  ++ ++eR
   KKY17751.1 103 ILLYHMFT-GKPAVEGSTALEIVQKVLNGRIpwvSNHREDAPKVVSRIIAKMTARAMDER 161
                  ********.*****************8887644456777788888888888887777777 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.4e-05     0.033      22      92 ..     353     416 ..     347     538 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.4e-05
  KAP_NTPase  22 vvgLygkWGsGKssllnkledelkefakpvrflfaefnawsfkggddavaellaaLadaleeeygqlatkl 92 
                 v++++g+ GsGK++l+++++  ++++     f+ ++f+++ ++    +++ l++a+++ l + ++++++ +
  KKY17751.1 353 VLVISGAQGSGKTHLIQSVQPIIRKH---SYFTMTKFDRARPS----PFEPLMRAISSLLRQIFSEKDVAT 416
                 78999*********************...99**********96....688888888888888777776655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00026      0.36       2      29 ..     353     380 ..     352     411 .. 0.87
   2 ?   -3.1   0.0       4.6   6.4e+03     105     164 ..     535     596 ..     524     598 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00026
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-S CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegkl 29 
                 ++++ G++GsGKT+L+q++   +++  +
  KKY17751.1 353 VLVISGAQGSGKTHLIQSVQPIIRKHSY 380
                 789***************9877777665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.6
                 ....HHHHHCTTTTT--EEEEEEE.CCCHHHHCTTSSCE....EEEE--TCCHHHHHHHHCTT CS
       NACHT 105 vrtlLselirkkllpeasllltvr.pralrdleeqleea..ivlevegfsesrrkqlvrkyfs 164
                 + +l s+++r+kl+  + +l+  r  +a++++ + + +     + +  ++e+++ ++v ++++
  KKY17751.1 535 SLELVSNIVRAKLPI-VLMLAGRReEDASPKAMQIMDSDhtCKIDLSNLKEEDVFAYVGETLH 596
                 667777777775444.44444444044444444444333667789999999999999988887 PP

>> DUF2981  Protein of unknown function (DUF2981)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.8     0.001       1.4     127     215 ..    2074    2172 ..    2024    2195 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.001
     DUF2981  127 tdennlpd...........aklrvpqneespikqhvrsdvnspantaelatidaalrdlekakkliretatkvpvgaasskipkeatlPetkekevk 212 
                   ++ nl +           ++ r + +++ p+ ++++ ++++p+ + + +  +++l+d +++++ i +++tk ++g+a+    +  + P + e+e  
  KKY17751.1 2074 SNTTNLQNpfdelakstrqSDGRATLDQNRPVDGEIKPQLAKPKRQIKRIKRKSELSDIDTNRSSI-NSDTKDGSGNAEDPETTPKPKPAGSENENL 2169
                  334444333444443333345566688999************************************.899999999988777777777777666643 PP

     DUF2981  213 ass 215 
                   + 
  KKY17751.1 2170 HTR 2172
                  333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.22u 0.33s 00:00:01.55 Elapsed: 00:00:00.51
# Mc/sec: 12978.51
//
Query:       KKY17752.1  [L=327]
Description: putative lccl domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.24   10.8   2.5       0.42   10.0   2.5    1.5  1  GPI2      Phosphatidylinositol N-acetylglucosaminyltransferas


Domain annotation for each model (and alignments):
>> GPI2  Phosphatidylinositol N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.5   2.3e-05      0.42     186     259 ..     120     187 ..      32     195 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 2.3e-05
        GPI2 186 SRLpstlqVFslllfsievfglfPvfrrslrhrswrlhvvltvllvllagagvgiilklllavvlllllalimg 259
                  RLp+ l+ +sll +s+ +f+l+P ++ +++      h++l +ll+ ++++ +   l + +++++l+++ ++ +
  KKY17752.1 120 GRLPQYLKFYSLLAVSLVIFVLIPDLNLRIH------HYILALLLLPGTSLQTRPSLVYQGLLIGLFISGVARW 187
                 6**************************9999......7889999888888777766666666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 2121.43
//
Query:       KKY17753.1  [L=397]
Description: putative cell division protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-35  122.8   0.0    2.2e-35  122.3   0.0    1.2  1  Pkinase         Protein kinase domain
    3.6e-17   62.5   0.0    5.5e-17   61.9   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    4.7e-05   23.3   0.1    8.1e-05   22.5   0.1    1.4  1  KIX_2           KIX domain
      5e-05   22.8   0.0    0.00011   21.6   0.0    1.5  2  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.029   14.3   0.2       0.15   11.9   0.1    2.0  2  APH             Phosphotransferase enzyme family
      0.057   12.8   0.1       0.14   11.5   0.1    1.6  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
      0.092   11.5   0.0       0.19   10.5   0.0    1.4  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3   0.0   8.6e-39   2.2e-35      19     260 ..     122     393 ..     106     394 .. 0.84

  Alignments for each domain:
  == domain 1  score: 122.3 bits;  conditional E-value: 8.6e-39
                 EETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS..CTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHHHHSS.--HHHHHHHHHHHHHHHHH CS
     Pkinase  19 veketgkivAvKkikkekakkkkekkvlrEikilkklk..hpnivrlyevfee.kdelylvleyveggeladllerkgs.lseeeakkiakqilegley 113
                 +++    ivA+K+     ++  +  + +rE +il +     ++ + l+++++e   +l+lv+ +++ + l+ l +r+   ++ +   +i  +++++l++
  KKY17753.1 122 TKSGHTTIVALKVTTPLAMSPPH--NSAREARILMHATtkDSHTIPLIDALTEpGGHLILVFPFMHYD-LDFLQQRHPDsITADVKHQIELSLFSALAH 217
                 45667789999999998888865..577887776555444999******99985789*********88.6555554443499999999*********** PP

                 HHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCS.....BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHH..SS-STTTSSHH CS
     Pkinase 114 lHskgiiHrDlKpeNiLid.ekgelKitDFGlakelesssk.....ltsfvgtseYlAPEvl.keneyskkvDvWslGvilyellt..gkppfsgekgk 203
                 +H+ giiHrD+Kp+NiL+   +g + ++DFG+a   +   +     + + vgt  Y++PE+l ++++y+++ D+W++G++++el     k +f+     
  KKY17753.1 218 IHDLGIIHRDIKPSNILLRtLTGPIYLADFGIAWSPNDPDSepadqKITDVGTTCYRPPELLfGYTNYDQSLDMWAAGCVIAELEHpeHKALFN----A 312
                 *******************77888*********99999888899999999*********************************95411444555....5 PP

                 HHHHHHHHTHHHHHHHCT.SHH...HHHTTS.......................-HHHHHHHHHHT-SSGCCSTTHHHHHT CS
     Pkinase 204 ekvekeldqlekilkilg.etkeklpeasei.......................seeakdllkkllkkdpkkRltaeellq 260
                     +el  + +i++i+g + + ++p  +++                        e+a++l+++l+++++++Rlta+++l+
  KKY17753.1 313 GPLGSELALISSIFHIMGtPDETTWPSTTKLpdwgkmafnqypaqpwtkilngvTEKAIELVSRLVRYEMSERLTAKKALE 393
                 556677888889*****98667778888888999999****************************************9986 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   2.1e-20   5.5e-17       9     198 ..     106     301 ..     105     308 .. 0.87

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 2.1e-20
                  EESSEEEEEEEEET..TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS..-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHTCTTTSB CS
  Pkinase_Tyr   9 eGafGkVvegtlkg..ekekkevkVavKtlkeeateeekeelleeakimkkl..khpnivkllgvct.keepllivteyvkgGdLlkfLrkkekeklt 101
                  +G ++++++++++   +k+ +++ Va+K+ +  a++   ++  +ea+i+++   k  + + l+ + t  +++l++v+ ++++   l+fL++++ +++t
   KKY17753.1 106 NGLYSTIYKASASPlgTKSGHTTIVALKVTTPLAMSPP-HNSAREARILMHAttKDSHTIPLIDALTePGGHLILVFPFMHYD--LDFLQQRHPDSIT 200
                  58899********999999************9999995.5566777776665478999********9778889*******996..589*9999***** PP

                  HHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.TTEEEE-STTTHEETTTSSEE..EETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHHHHH CS
  Pkinase_Tyr 102 lkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.nkvvkisDfGLardiekddey..vkkeeaklpvkWmapEslkekk.ftsksDvWsfGvll 195
                   + + ++ l + ++++++++  ++Hrd+   N+Ll++ +  + ++DfG+a + ++ d+    +k +      + +pE l+  + + ++ D+W+ G ++
   KKY17753.1 201 ADVKHQIELSLFSALAHIHDLGIIHRDIKPSNILLRTlTGPIYLADFGIAWSPNDPDSEpaDQKITDVGTTCYRPPELLFGYTnYDQSLDMWAAGCVI 298
                  ***********************************985779*********9995554444355556667899******99877488888********9 PP

                  HHH CS
  Pkinase_Tyr 196 wEi 198
                   E+
   KKY17753.1 299 AEL 301
                  997 PP

>> KIX_2  KIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   3.2e-08   8.1e-05       2      66 ..       4      65 ..       3      75 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 3.2e-08
       KIX_2  2 sdwratlspeeRqkivnkiletLkkhlpvsgpeglnelkkiAvrFEekiFskAtskedYlrkisl 66
                 +w++++  ++R +++  i +tL+ h  ++++         A + E +++++Ats  dY r++s+
  KKY17753.1  4 TSWQSAVGFADRLSNIMAISTTLQTHDRSGKDY---NAASLARELEAQAYQEATSEVDYQRRCSS 65
                58************************5555554...5667899*******************985 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.8   4.5e+03     202     230 ..     135     163 ..     127     164 .. 0.82
   2 !   21.6   0.0   4.5e-08   0.00011     131     240 ..     188     298 ..     176     302 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.8
  Kinase-like 202 evekgfaPpEllgsrggytrknktkmthk 230
                  +++ + +Pp   ++ ++  ++++tk +h 
   KKY17753.1 135 TTPLAMSPPHNSAREARILMHATTKDSHT 163
                  56788999999999999999999998886 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 4.5e-08
  Kinase-like 131 lqkrset.hkkletiarlllTlqlirlaanLqakglvhgkftvdnlllde.kgglmlggftaLvrag..tkvvl.seve....kgfaPpEllgsrggy 219
                  l++ +++   +     ++++ l l    a+++++g++h ++++ n+ll    g+++l +f+  +     ++ ++  ++       + PpEll      
   KKY17753.1 188 LDFLQQRhPDSITADVKHQIELSLFSALAHIHDLGIIHRDIKPSNILLRTlTGPIYLADFGIAWSPNdpDSEPAdQKITdvgtTCYRPPELLFG---- 281
                  455555523445556789999999************************87489********999755114555433333777889*****9976.... PP

  Kinase-like 220 trknktkmthkldaWqlGlvi 240
                       t++  +ld W+ G vi
   KKY17753.1 282 ----YTNYDQSLDMWAAGCVI 298
                  ....35677799999999998 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.066   1.7e+02      32     108 ..     141     221 ..     122     222 .. 0.74
   2 ?   11.9   0.1     6e-05      0.15     136     194 ..     198     248 ..     180     251 .. 0.66

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.066
                 S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS...HHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  32 raaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr...klsaaqlpellealgeflaalhqv 108
                  ++   +re+++l +    +  ++P + a+ + ++++ l+f ++ y       r     +a+++ ++   l ++la++h++
  KKY17753.1 141 SPPHNSAREARILMHATTKDShTIPLIDALTEPGGHLILVFPFMHYDLDFLQQRhpdSITADVKHQIELSLFSALAHIHDL 221
                 56667789999999988887789999999999******9999997743322222446588888888888888888888876 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 6e-05
                 CCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 136 llaselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                 ++ ++++    ++e   l   +a+ +   + +++H+D++p N+l++   g++ ++ Df+
  KKY17753.1 198 SITADVKH---QIEL-SLFSALAHIH---DLGIIHRDIKPSNILLRTLTGPI-YLADFG 248
                 44444444...4444.2233455666...79***************766776.888887 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   5.3e-05      0.14     105     155 ..     188     239 ..     185     249 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.3e-05
         Kdo 105 Ledllakwae.laeelkrallkavgrliaklhragvnHadlyaknillqqee 155
                 L+ l +++ + +   +k+++   +  + a +h++g+ H+d+ + nill++  
  KKY17753.1 188 LDFLQQRHPDsITADVKHQIELSLFSALAHIHDLGIIHRDIKPSNILLRTLT 239
                 555556555566666777777777788999******************9865 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   7.4e-05      0.19     321     371 ..     217     262 ..     211     280 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.4e-05
  Pkinase_fungal 321 sLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesga 371
                       + + gi+HrDi   Nil+     + +    L+D+ +a + +d++se ++
      KKY17753.1 217 HIH-DLGIIHRDIKPSNILLR----TLTGPIYLADFGIAWSPNDPDSEPAD 262
                     556.99**************9....33556778888888877776666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 2505.50
//
Query:       KKY17754.1  [L=792]
Description: putative fes cip4 homology domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-77  258.3   0.0    1.2e-76  257.7   0.0    1.3  1  muHD        Muniscin C-terminal mu homology domain
    5.5e-08   33.0   0.0    4.1e-07   30.2   0.0    2.4  2  FCH         Fes/CIP4, and EFC/F-BAR homology domain
  ------ inclusion threshold ------
      0.077   13.0   1.1       0.33   11.0   0.0    2.5  3  Laminin_II  Laminin Domain II


Domain annotation for each model (and alignments):
>> muHD  Muniscin C-terminal mu homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.7   0.0     2e-80   1.2e-76       1     262 [.     519     792 .]     519     792 .] 0.93

  Alignments for each domain:
  == domain 1  score: 257.7 bits;  conditional E-value: 2e-80
                 -EEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEE--SSS-----SEEEEEEETGGGEEEEEE-TTTE......EEEET...TEEEE-TTTTBT-E.EEE CS
        muHD   1 pgLnasiiEtvnAwFkdgevtkskvvGelaLaynaspaasltlpdkltvrlenfeklekvapNpafvte....ekqkd...geykinlsalarktktva 92 
                 pgLnasi+Etvn wF dg+v+ks+ +Ge+aLay+++    +    ++t+rl+nf+ lekva+Npafv++    +   +   gey+i+l++++++t+tva
  KKY17754.1 519 PGLNASIVETVNTWFVDGAVSKSFATGEIALAYTSTGGGDS--QSDETIRLDNFQFLEKVAANPAFVSAnvseK---EehaGEYSIHLPSITKPTPTVA 612
                 7***********************************99986..789*********************9875433...333588**************** PP

                 EEEEEES......---SEEEEEEEEE-SSEEEEEEEEEE-TT...TT--E.EEEEEEEEEEEB-SS....-EEEEEESSS..--B-SSS-EEEEE-SSE CS
        muHD  93 lkYqvhadpskasascPlilkpvWkleehqasviltyslnps...laiasavtLenlvlvvnldgs....ratsvqskPq..atfskeksrvtWklpel 182
                 lkYq+h d+ + sa++P++l+p+W+++++qasvi+ yslnps    + ++++t +n++l+v+ld s    +a ++++ P+  a+f++++s+++Wklpel
  KKY17754.1 613 LKYQLHLDAGSPSAYSPMFLTPAWQIQDTQASVIIGYSLNPSfhlPEGTDSITFRNFALTVSLDISgdngKAVNAMMAPTegASFKRKHSAIVWKLPEL 711
                 *****************************************8655455556**************99*99***************************** PP

                 EEETT---EEEEEEEEESS----SS-EEEEEEE---S-SS----EEEEE.ESSS-T........T----EE-EEEEEEEEEEEE. CS
        muHD 183 eltsdsdegkllarfsteesaekpgkVevkFeveegatlsrlgislleq.kkeedPfa....aeegktwkevptkrklvaGkYls 262
                 ++ts    ++llarf+t++ ++k g++e+k+e++ g+++s+lg+s+++  +++ dPfa    a++ ktw+ +p++rklv+G+Y +
  KKY17754.1 712 VVTSTP--QRLLARFMTAA-PPKAGHIETKWELQ-GQSGSSLGVSVMSGaSTDIDPFAdetvATPTKTWASIPVTRKLVTGRYSA 792
                 ****99..8******9986.559***********.999*********88899******99999999*****************75 PP

>> FCH  Fes/CIP4, and EFC/F-BAR homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   6.9e-11   4.1e-07       2      77 .]      21      92 ..      20      92 .. 0.92
   2 ?   -0.7   0.0      0.29   1.7e+03      52      76 ..     397     426 ..     367     427 .. 0.70

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 6.9e-11
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT----TT.-.....HHHHHHHHHHHHHHHHHHHHHHH CS
         FCH  2 fkvlqkrleqgialledlqeflkeRaeiEkeYakkLqkLakkylkrr.kkkseestlvtawtvlleeteklaqshla 77
                ++vl +r++q  + + d++++l  R  +E+ Ya+ L++La+k l+ +  +    + ++t w+ ++ + e++aqsh++
  KKY17754.1 21 VNVLSDRVKQINKINIDIADWLA-RRRVEEVYAQGLRRLARKPLHDGgAL----GIFQTPWQRIVASAEDIAQSHEN 92
                6899******************9.5689*****************87665....99*******************85 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.29
                 ........HHHHHHHHHHHHHHHHHHHHHH CS
         FCH  52 s.....eestlvtawtvlleeteklaqshl 76 
                 +     +e+  ++a+++l ++++ +aq +l
  KKY17754.1 397 DqpiqeDEGEAKEALDSLASQLRLQAQTRL 426
                 044555788899999999999999999986 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.17     1e+03       4      41 ..      79     116 ..      77     120 .. 0.84
   2 ?   11.0   0.0   5.5e-05      0.33      18      84 ..     117     183 ..     106     195 .. 0.89
   3 ?   -3.3   0.1       1.4   8.2e+03      20      44 ..     398     422 ..     388     441 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.17
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II   4 laaeanetakevleqlaplsqnlentkeklseinrsve 41 
                 ++a+a+++a++ ++  a++++++e    +  + nr+++
  KKY17754.1  79 IVASAEDIAQSHENFAAKIDTDVESPLRQFASSNREMQ 116
                 68999999999999999999999998888888888765 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 5.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH CS
  Laminin_II  18 qlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleea 84 
                  +  ++ nl+ + +++ +++r++++  +k + a++a   ++++ ++ + +ap ++++l+  ++ + +
  KKY17754.1 117 SMSTIQGNLQGIAKEIDGAQRKADKARHKPDRATHANGTVEDATSQWDSQAPFVFEQLQAADETRLN 183
                 5678999***************************************************988877766 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.4
                 XXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II  20 aplsqnlentkeklseinrsveetn 44 
                 +p++++  + ke l +++++++   
  KKY17754.1 398 QPIQEDEGEAKEALDSLASQLRLQA 422
                 6777777788888888888776433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.34s 00:00:01.11 Elapsed: 00:00:00.50
# Mc/sec: 4769.15
//
Query:       KKY17755.1  [L=308]
Description: putative mannosyl transferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-80  268.9   0.0    4.3e-80  268.6   0.0    1.1  1  DUF3445   Protein of unknown function (DUF3445)


Domain annotation for each model (and alignments):
>> DUF3445  Protein of unknown function (DUF3445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.6   0.0   2.4e-84   4.3e-80       1     224 [.       2     245 ..       2     246 .. 0.92

  Alignments for each domain:
  == domain 1  score: 268.6 bits;  conditional E-value: 2.4e-84
     DUF3445   1 glrkldpsewieldktYkerieerrrlleehgekvlavlpeaeaavkElleelveyLparYPqlFelskkkt.lenkvtgetfel.......eplevla 91 
                 glr++++++wield++Y + ++ ++r+++e+g+k+++++pea + + Elleel +yLparYP+lF++  +++ ++n + ge+f++       +p++++a
  KKY17755.1   2 GLRTMNWDDWIELDNHYPRFHADKARRIAERGSKCCHTAPEAFDGAVELLEELSDYLPARYPTLFRR--TAVgIDNLWSGESFNIverplteDPMQMAA 98 
                 689**************************************************************88..4677**********9999998866****** PP

     DUF3445  92 rlvqeDllillen.dgeyyleAgvvcfpagwdlreklgkpLseiHep..VpgykekleksmerffarlepgkpvkRvnwsiqtddelfwase....... 180
                 rlvq+Dl+i+ e+ dg+yyl Ag+++++++w+l++klg+pLseiH++  Vp+ykeklek m +ff+rl+p++pv+R+n+++q+dd+l+w s        
  KKY17755.1  99 RLVQDDLAIMFEKpDGQYYLLAGAILLAGFWRLEDKLGMPLSEIHTSgdVPQYKEKLEKGMMNFFRRLRPEDPVNRNNYFLQVDDDLAW-SYsigseds 196
                 **********9998999************************************************************************.334677666 PP

     DUF3445 181 .....eeeeeeldieelflRvErQtLrRLpksgaivFtirtyltpleel 224
                      ++ e++  ie++++R+ErQ+LrRLp+sg++vFtirty++p++e+
  KKY17755.1 197 psiswNTAEKNRAIEHHYFRSERQSLRRLPRSGGVVFTIRTYFHPVTEI 245
                 6655322223355**********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.35s 00:00:00.91 Elapsed: 00:00:00.51
# Mc/sec: 1818.04
//
Query:       KKY17756.1  [L=416]
Description: putative exonuclease v [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-88  297.4   0.0    3.2e-88  296.7   0.0    1.3  1  Exo5      Exonuclease V - a 5' deoxyribonuclease
  ------ inclusion threshold ------
      0.086   12.7   0.0        2.2    8.1   0.0    2.2  2  PDDEXK_1  PD-(D/E)XK nuclease superfamily


Domain annotation for each model (and alignments):
>> Exo5  Exonuclease V - a 5' deoxyribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.7   0.0   3.6e-92   3.2e-88       1     232 [.     138     383 ..     138     400 .. 0.89

  Alignments for each domain:
  == domain 1  score: 296.7 bits;  conditional E-value: 3.6e-92
        Exo5   1 splerfrkkpkkklsVtdLvspaWCElqyeYtLtklgrkkrtkamkrGskvHkklEeevhttvevevttkedkwglriwnviqgLrtLretGltRElev 99 
                 splerfr +pkk+lsVtdL+spaWCElqy+YtL+k+g+kkrt+amk+G+k+Hk+lE+evhtt++v+v t+ed wglr+wnviq LrtL etG tRE+e+
  KKY17756.1 138 SPLERFRVPPKKALSVTDLISPAWCELQYFYTLSKHGKKKRTPAMKQGTKIHKQLENEVHTTYPVTVLTREDGWGLRLWNVIQSLRTLEETGRTREMEI 236
                 8************************************************************************************************** PP

        Exo5 100 wGlvdgelvnGvIDelslenpdeeleeellesrkkksadvekkkaalseeqesikdylesss............................kkkrkiyit 170
                 wGlv+ge+vnGv+Del ++npd++ e+++++               l+e+q++i++yl++++                            + ++ iy+t
  KKY17756.1 237 WGLVEGEFVNGVVDELGYQNPDPKGENAAAK--------------LLPEDQKTITEYLTKHAgghdittamnqdiadpkkspiaahssaiSCEKVIYLT 321
                 ***********************88888877..............44444445555544444444555555566677778889999999888889**** PP

        Exo5 171 DvKTrgskslpsssqvrptkiQlmlYrrlLselaadkldiesvferydldpdepfsdaflaq 232
                 D+KTr+s+s+p  ++  pt++Ql+lY++++++la +++ +++v++ry+ld+d++fsd+f+aq
  KKY17756.1 322 DIKTRASRSIPDTASTLPTQFQLFLYHHFIEQLALGRFPLQAVADRYELDVDATFSDEFIAQ 383
                 *************************************************************9 PP

>> PDDEXK_1  PD-(D/E)XK nuclease superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00024       2.2       2      47 ..     151     195 ..     150     284 .. 0.83
   2 ?    2.5   0.0     0.013   1.2e+02     144     180 ..     318     354 ..     313     379 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00024
    PDDEXK_1   2 lSvsrletfleCplrfflryllglreeeeleapdlGtlvHaaleef 47 
                 lSv+ l   + C l++f++ l +  +++++ a+  Gt +H+ le  
  KKY17756.1 151 LSVTDLISPAWCELQYFYT-LSKHGKKKRTPAMKQGTKIHKQLENE 195
                 89****************5.555545555555566********954 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.013
    PDDEXK_1 144 lriiDyKtgsappkskelaelkeglQlllYllalaeg 180
                 +++ D Kt +++  +   + l +++Ql+lY   +++ 
  KKY17756.1 318 IYLTDIKTRASRSIPDTASTLPTQFQLFLYHHFIEQL 354
                 6789***988887777777999999*****9888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.38s 00:00:00.98 Elapsed: 00:00:00.73
# Mc/sec: 1717.48
//
Query:       KKY17757.1  [L=136]
Description: putative histone H3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-52  176.0   2.5    4.5e-52  175.9   2.5    1.0  1  Histone        Core histone H2A/H2B/H3/H4
      6e-06   26.6   0.0      9e-06   26.0   0.0    1.2  1  CENP-S         CENP-S protein
      4e-05   24.2   1.2    4.7e-05   24.0   1.2    1.2  1  PAF            PCNA-associated factor histone like domain
    4.3e-05   23.6   0.4    7.4e-05   22.8   0.1    1.6  2  CENP-T_C       Centromere kinetochore component CENP-T histon
     0.0038   17.5   0.4     0.0065   16.7   0.0    1.5  2  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
  ------ inclusion threshold ------
      0.026   14.6   0.2      0.042   13.9   0.0    1.5  2  TFIID-31kDa    Transcription initiation factor IID, 31kD subu


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.9   2.5   1.5e-55   4.5e-52       1     131 []       1     132 [.       1     132 [. 0.99

  Alignments for each domain:
  == domain 1  score: 175.9 bits;  conditional E-value: 1.5e-55
                 XXEESXEEEXXXXEEXXXXXXXXXXHT.TS-SSSSB--TTT-XTTHHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHH CS
     Histone   1 marekekarkesektapekkvsakker.kasskskkkkkrryrpgtvalkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEa 98 
                 mar+k++ark+++++ap+k++++k +r +a+s+   kk++ry+pgtval+eir+yqkst+lli+klpf+R+vrei +++k+dlr++++a+ alqe +Ea
  KKY17757.1   1 MARTKQTARKSTGGKAPRKQLASKAARkSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEA 99 
                 9************************************************************************************************** PP

                 HHHHHHHHHHHHHHHTTXSEEXHHHHHHHHHHT CS
     Histone  99 llvelfeeAnllakhaKRvTitpkDiqlArrlr 131
                 +lv+lfe++nl+a+haKRvTi++kDiqlArrlr
  KKY17757.1 100 YLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLR 132
                 *******************************97 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0     3e-09     9e-06      13      71 ..      70     130 ..      65     133 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 3e-09
      CENP-S  13 kiveeeaa..ekeveatkqfiaaltelvykqlenlakDLeaFakHAkRstittdDvlLlaR 71 
                 ++v+e+a+  ++++++ +++i+al e v + l +l +D ++ a HAkR ti+ +D+ L  R
  KKY17757.1  70 RLVREIAQdfKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARR 130
                 4555544423677789999*************************************99766 PP

>> PAF  PCNA-associated factor histone like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   1.2   1.6e-08   4.7e-05       1      62 [.       1      58 [.       1      82 [. 0.90

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.6e-08
         PAF  1 mVRTkAdvssarkavaakAprkslgassssssssssspkkkkkkyvGGNpvcpRptPaWQKp 62
                m RTk ++   rk  ++kAprk+l+++   +s+ s++  kk + y +G  v  R++   QK 
  KKY17757.1  1 MARTKQTA---RKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPG-TVALREIRRYQKS 58
                99******...****************999999999988888888888.6888999999986 PP

>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.4   7.3e+03      14      25 ..      19      30 ..      14      39 .. 0.59
   2 !   22.8   0.1   2.5e-08   7.4e-05      11      76 ..      70     130 ..      58     135 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.4
    CENP-T_C 14 kklakrfakasg 25
                k+la+++a++s+
  KKY17757.1 19 KQLASKAARKSA 30
                445555555544 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 2.5e-08
    CENP-T_C  11 avvkklakrfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmkr 76 
                  +v+ +a++f     s  + + +a+ al+++ + ++  + eD +  a Ha+R ti+++D+ l  +r
  KKY17757.1  70 RLVREIAQDF----KSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQL-ARR 130
                 3455566666....5679*****************************************864.444 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       4.8   1.4e+04      39      46 ..      20      27 ..      19      29 .. 0.58
   2 !   16.7   0.0   2.2e-06    0.0065       2      64 ..      65     128 ..      64     128 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.8
                   HHHHHHHH CS
  CBFD_NFYB_HMF 39 elaseAae 46
                   +las+Aa+
     KKY17757.1 20 QLASKAAR 27
                   46666664 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.2e-06
                    XXXHHHHHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS
  CBFD_NFYB_HMF   2 eLPiarvkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklA 64 
                    +LP  r  + + +d +++ ++ ++A   ++e+ve ++ +l + ++  + ++kr ti+ ++i+lA
     KKY17757.1  65 KLPFQRLVREIAQDfKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLA 128
                    78999988878888899********************************************998 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.5   7.6e+03      73      90 ..      10      27 ..       4      31 .. 0.63
   2 ?   13.9   0.0   1.4e-05     0.042      23      67 ..      85     129 ..      68     136 .] 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.5
  TFIID-31kDa 73 kqfkepppkelLlelAae 90
                 k+  ++ p++ L + Aa+
   KKY17757.1 10 KSTGGKAPRKQLASKAAR 27
                 455556777777776654 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.4e-05
  TFIID-31kDa  23 yeerVvlqLldfayrytssvLedAkvlaehakkkevslddvrlAi 67 
                  +++  +  L + +  y +s++ed +++a hak+ +++ +d++lA 
   KKY17757.1  85 FQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLAR 129
                  67777888999999*****************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.61
# Mc/sec: 674.33
//
Query:       KKY17758.1  [L=103]
Description: putative histone h4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-09   35.6   0.1    9.7e-09   35.3   0.1    1.2  1  CENP-T_C         Centromere kinetochore component CENP-T hist
    2.4e-05   24.7   0.1    2.8e-05   24.5   0.1    1.2  1  Histone          Core histone H2A/H2B/H3/H4
    7.2e-05   22.9   0.1     0.0001   22.4   0.1    1.3  1  TAF              TATA box binding protein associated factor (
     0.0002   21.6   0.1    0.00035   20.8   0.0    1.5  1  CBFD_NFYB_HMF    Histone-like transcription factor (CBF/NF-Y)
     0.0004   20.7   0.1    0.00056   20.2   0.1    1.4  1  CENP-S           CENP-S protein
     0.0085   16.2   0.0       0.01   15.9   0.0    1.1  1  TFIID-31kDa      Transcription initiation factor IID, 31kD su
  ------ inclusion threshold ------
      0.031   14.3   0.0      0.037   14.0   0.0    1.3  1  Bromo_TP         Bromodomain associated
      0.052   13.3   0.2      0.064   13.0   0.2    1.0  1  UPF0137          Uncharacterised protein family (UPF0137)
       0.11   12.5   0.0       0.12   12.3   0.0    1.1  1  HIGH_NTase1_ass  Cytidyltransferase-related C-terminal region


Domain annotation for each model (and alignments):
>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   4.9e-12   9.7e-09      16      79 ..      33      96 ..      18      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 4.9e-12
    CENP-T_C 16 lakrfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmkrqrk 79
                 a r   ++g  +++++  ++    +++ f+e v +D  +y++Ha+RKt+ + Dv+  +krq++
  KKY17758.1 33 PAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96
                4444444456778999**********************************************86 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   1.4e-08   2.8e-05      77     129 ..      40      92 ..      16      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.4e-08
                 TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHH CS
     Histone  77 sekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArr 129
                 +++  +risa+  +    +l+ +l+ +  +A  +++haKR+T+t+ D+  A++
  KKY17758.1  40 RRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALK 92 
                 4677889999999999999*****************************99987 PP

>> TAF  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   5.3e-08    0.0001       5      66 .]      31      92 ..      27      92 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 5.3e-08
                -HHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH- CS
         TAF  5 pkesvkviAeslGitnLsdeaaalLaedveyrlkeivqeaakfmrhskRqkLtvaDvdsALr 66
                +k +++ +A   G++ +s+   ++    ++  l  ++++a+ +++h+kR++ t+ Dv +AL+
  KKY17758.1 31 TKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALK 92
                55666777777777777776666666667777889*************************98 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.7e-07   0.00035       8      65 .]      35      91 ..      28      91 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.7e-07
                   HHHHHHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF  8 vkkImksdpdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65
                   ++++ +   ++++i+    e    ++++f+e + + A+ +++++krKt++  ++  A+
     KKY17758.1 35 IRRLARRG-GVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYAL 91
                   77777777.88888888888888899***************************98876 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   2.8e-07   0.00056      42      73 ..      63      94 ..      24      97 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.8e-07
      CENP-S 42 lenlakDLeaFakHAkRstittdDvlLlaRrn 73
                le + +D  ++ +HAkR+t+t  Dv+  ++r+
  KKY17758.1 63 LEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94
                777889999****************9998885 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.1e-06      0.01      14      70 ..      38      94 ..      31     101 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.1e-06
  TFIID-31kDa 14 iLaslgvteyeerVvlqLldfayrytssvLedAkvlaehakkkevslddvrlAiqsr 70
                 + +  gv+ ++  +++    +   +   v++dA ++ ehak+k+v+  dv  A++ +
   KKY17758.1 38 LARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94
                 555667777777777777788889999***********************9998865 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.8e-05     0.037      33      70 ..      56      93 ..      27      97 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
                HHHHHHHHHHHHHHHHHHHTTSS-SS--HHHHHHHHHH CS
    Bromo_TP 33 teiaqkYirelgeqaksfaehagRseptlkDvvltLqe 70
                +++++++++ + ++a  + eha R ++t  Dvv +L++
  KKY17758.1 56 RGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKR 93
                678999999***************************97 PP

>> UPF0137  Uncharacterised protein family (UPF0137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   3.2e-05     0.064     141     212 ..      23      94 ..      18      99 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.2e-05
     UPF0137 141 lkseveslPrqavYtLasRegslekkeeiienynGetktelleiirktfPlldtdrRqknlsekllellakl 212
                 l+ +++ + + a+  La R g  +    i e+ +G  kt l  +ir  +  +++ +R++  s  ++  l++ 
  KKY17758.1  23 LRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 
                 788999******************************************************999999999776 PP

>> HIGH_NTase1_ass  Cytidyltransferase-related C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.1e-05      0.12      69     109 ..      25      65 ..      11      92 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.1e-05
  HIGH_NTase1_ass  69 erieGvsGtkireavvegnlekvkdmlPeetievlkeelen 109
                      + i+G++   ir+    g +++++ m+ eet  vlk +le 
       KKY17758.1  25 DNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEG 65 
                      679*********************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.36s 00:00:00.90 Elapsed: 00:00:00.69
# Mc/sec: 448.52
//
Query:       KKY17759.1  [L=243]
Description: putative cutinase precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-46  158.6   0.9    2.4e-46  157.9   0.4    1.5  2  Cutinase  Cutinase
    0.00076   19.1   0.1     0.0012   18.5   0.1    1.2  1  PE-PPE    PE-PPE domain
  ------ inclusion threshold ------
      0.058   13.3   0.0      0.093   12.6   0.0    1.2  1  VirJ      Bacterial virulence protein (VirJ)
      0.067   12.7   0.1       0.12   11.9   0.1    1.4  1  DUF2974   Protein of unknown function (DUF2974)
      0.095   12.6   0.0       0.15   11.9   0.0    1.3  1  ETF       Electron transfer flavoprotein domain


Domain annotation for each model (and alignments):
>> Cutinase  Cutinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.92   3.3e+03       6      20 ..      14      28 ..      13      39 .. 0.76
   2 !  157.9   0.4   6.7e-50   2.4e-46       1     177 [.      43     212 ..      43     213 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.92
                EEEEE--TT--TTTS CS
    Cutinase  6 evifArgttepgglg 20
                ++++Ar t+e+  l+
  KKY17759.1 14 IIVIARRTHESRSLS 28
                6899****9998874 PP

  == domain 2  score: 157.9 bits;  conditional E-value: 6.7e-50
                 ---SEEEEEE--TT--TTT.SSHHHHHHHHHHHH.TTT-EEEEE------CGGSTTSS-HHHHHHHHHHHHHHHHH-TT-EEEEEEETHHHHHHHHHHT CS
    Cutinase   1 sckdvevifArgttepggl.gsvGeavvsalesavgsksvavqgvnYpAdleqlyegseeagakeaaalvqslaskCPdtkivlgGYSqGaqvidnaie 98 
                 sc+ +++i+Argt +pg+l  svG+ +++al   vg++++ +qgv YpA+  ++ +g++  g++++a lv  +as+CP tkiv++GYSqG+q+i+na+ 
  KKY17759.1  43 SCAAITIIYARGTLDPGNLgESVGPPFFDALVDIVGESNLVIQGVPYPAQIWGFAHGGSPVGSQNMADLVALAASQCPYTKIVMSGYSQGGQLIHNAAD 141
                 6******************779***************************************************************************** PP

                 T.....S-HHHHHHEEEEEEES-TTCCCCTTS-TTS-GGGEEEE--TT-GGG.TS----GGGG-GGGG.HHHHHHHHHHH CS
    Cutinase  99 ggatatlpaavadkvaavvlfGdpsnvaglpevsklyaskikslCdagDpiC.gsgneleaHlsYvseyttqaakFvvsk 177
                 +     l+a+ +d++ +vv+fGdp+n+ ++++vs+   +k+ ++C++gD +C  +g  ++aHl+Y  + +++aa+Fv++k
  KKY17759.1 142 K-----LNASLTDDINSVVIFGDPYNGTAVGNVSA---DKVLTICHSGDDVCrHQGDITPAHLNYSGN-AAEAANFVAEK 212
                 *.....*************************9998...**************888888999******9.99******987 PP

>> PE-PPE  PE-PPE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   3.2e-07    0.0012       6      92 ..      85     163 ..      81     179 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.2e-07
      PE-PPE   6 elvsyPasflpvtglksltvdeSvaeGtenLea..airaelaagekvvvfGySqgalvasnekarlaalsepaapdqlsfvlvgnpnrp 92 
                 + v yPa+++ +   +s+       +G +n+ +  a+ a+++   k+v  GySqg+  + n+  +l a  + ++ d  s+v +g+p + 
  KKY17759.1  85 QGVPYPAQIWGFAHGGSP-------VGSQNMADlvALAASQCPYTKIVMSGYSQGGQLIHNAADKLNA--SLTD-DINSVVIFGDPYNG 163
                 568899999997665555.......333443331133444567889********************99..7788.8999*******775 PP

>> VirJ  Bacterial virulence protein (VirJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.6e-05     0.093      52     104 ..     106     158 ..      99     170 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.6e-05
        VirJ  52 aDldrlikkyakrwkkkkvvliGysfGaDvlPaaynkLkaatrdkvklvslla 104
                 ++++ l++ +a++   +k+v+ Gys+G  ++  a +kL+a+  d ++ v++++
  KKY17759.1 106 QNMADLVALAASQCPYTKIVMSGYSQGGQLIHNAADKLNASLTDDINSVVIFG 158
                 5678889999999999******************************9998865 PP

>> DUF2974  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   3.4e-05      0.12      84     120 ..     122     158 ..     101     174 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.4e-05
     DUF2974  84 gkiylgGhSkGGnlAvyaamnaeddlqeriskiysfD 120
                  ki+++G+S+GG l + aa +++ +l + i+ ++ f 
  KKY17759.1 122 TKIVMSGYSQGGQLIHNAADKLNASLTDDINSVVIFG 158
                 369***************************9999774 PP

>> ETF  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.3e-05      0.15      76     142 ..     107     175 ..     103     185 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.3e-05
                 HHHHHHHHHHHHC--SEEEEESSCCHHHHHHHHHHHCT-EEEEEESEEEEETCC..EEEEEECCCCTEE CS
         ETF  76 atakalaalikkedpdlvlagataigkqvaprlAalLgvplitdvteleveggk..ltvtRpieggngl 142
                 ++a+++a ++ +  ++ +++   ++g+q+    A +L+++l+ d+ ++ + g+    t++  + ++++l
  KKY17759.1 107 NMADLVALAASQCPYTKIVMSGYSQGGQLIHNAADKLNASLTDDINSVVIFGDPynGTAVGNVSADKVL 175
                 6789999999999**********************************9997554676776666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.34s 00:00:00.95 Elapsed: 00:00:00.54
# Mc/sec: 1360.38
//
Query:       KKY17760.1  [L=432]
Description: putative mfs dha1 multidrug resistance protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-16   58.8  27.9    4.1e-08   32.6   0.3    4.0  3  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.014   14.2   2.4      0.024   13.4   2.4    1.3  1  GPDPase_memb     Membrane domain of glycerophosphoryl diester
       0.18   11.7   0.5       0.39   10.6   0.5    1.5  1  Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.3   6.8e-12   4.1e-08       4      62 ..      93     151 ..      90     154 .. 0.88
   2 !   27.1   8.3   3.1e-10   1.8e-06     103     275 ..     158     325 ..     152     352 .. 0.67
   3 ?   -0.8   7.3     0.097   5.8e+02     107     171 ..     354     418 ..     347     431 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 6.8e-12
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrr 62 
                 + f++ la+s+++pa+ + + e ++ s++  ++++++y lg+a++ ++lG+ls+ +Grr
  KKY17760.1  93 MCFFAPLASSMFAPAIEQVMEEFHNTSATLSSFVVSVYVLGFAFGPPLLGPLSELYGRR 151
                 56999************6665555588888999*************************9 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 3.1e-10
       MFS_1 103 fpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee............. 188
                 + +++  + d+f++e+rg a++++sag  +G+++gp+   l+a                    +   l+ pe++ ++  + +++++             
  KKY17760.1 158 LNICGGTVGDLFKREDRGVAMSIVSAGPIIGPAVGPIGVNLIA-------------------TI---LFTPETYAPKILEWKTRRLrketgnldlhsrl 234
                 556677899***************9955555555555444444...................33...34444444444443333334444455555667 PP

       MFS_1 189 .......kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrlsdrlgrrr 275
                        +   ++ ++p  k+++ + v++++++ +++ +f++ +l+t++ ++ +e++g++    gl ++g  l+l+ +++    +++ + sdr+ r+r
  KKY17760.1 235 dsgipasELLTRSLIRP-VKMFFIPIVFFVCIVQAIVYGFMYLLLTTFSMVF-REQYGFGvgisGLTYLG--LGLGNIAA---LVFFMATSDRYLRKR 325
                 76777755555555555.8888888888888888888888999999999998.*******6555555555..55555555...667777777766555 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.097
       MFS_1 107 aaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv.lflll 171
                 +++i+d++   + ++a++ +++   lG ++ pl+g  ++ +lg  +   +l+++s+ ++   fll+
  KKY17760.1 354 LSYIVDVYGI-HAASALSAVAVLRCLGGAFLPLAGRPMYNALGIGWGNSLLGFISVGLMPlNFLLW 418
                 5678888888.8899999999999999999999999999999988888888888888866333344 PP

>> GPDPase_memb  Membrane domain of glycerophosphoryl diester phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.4     4e-06     0.024     206     280 ..     243     318 ..     237     358 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4e-06
  GPDPase_memb 206 ltkknflrlllklllliliivivltvilsllllllqllldkl.pkkvslilaiinltllqiisliilvlsivlitq 280
                   l  ++++r +   ++ i+ +v ++ +i+++ ++ll +++ ++  +++ + ++i  lt l + +  i++l++++ t+
    KKY17760.1 243 LLTRSLIRPVKMFFIPIVFFVCIVQAIVYGFMYLLLTTFSMVfREQYGFGVGISGLTYLGLGLGNIAALVFFMATS 318
                   55667788889999****************************99*************7766655555444444443 PP

>> Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.5   6.5e-05      0.39      17      34 ..     181     198 ..     177     202 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.5e-05
  Ribosomal_L11_N  17 AtpaPplGpaLGplGlni 34 
                      ++++P +Gpa+Gp G+n 
       KKY17760.1 181 VSAGPIIGPAVGPIGVNL 198
                      689**************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 2577.95
//
Query:       KKY17761.1  [L=340]
Description: hypothetical protein UCRPC4_g05394 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.50
# Mc/sec: 2063.34
//
Query:       KKY17762.1  [L=280]
Description: hypothetical protein UCRPC4_g05395 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.34s 00:00:00.90 Elapsed: 00:00:00.53
# Mc/sec: 1592.43
//
Query:       KKY17763.1  [L=524]
Description: hypothetical protein UCRPC4_g05396 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.019   15.5   0.0      0.044   14.3   0.0    1.7  1  T5orf172  T5orf172 domain


Domain annotation for each model (and alignments):
>> T5orf172  T5orf172 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.5e-06     0.044      70     102 ..     341     375 ..     296     376 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.5e-06
    T5orf172  70 ad.rryrvkcdcgk.ehrEwFevsleevdevvrri 102
                 a+ r++ + c+++  +h EwF+vs +e+ +v+  +
  KKY17763.1 341 AKaRHQIIICKKCMsTHLEWFKVSAQEAIQVISDW 375
                 551334444666659*****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       881  (0.0491383); expected 358.6 (0.02)
Passed bias filter:                      626  (0.0349155); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3999.77
//
Query:       KKY17764.1  [L=533]
Description: putative high-affinity glucose transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-99  333.2  22.7    2.9e-99  333.0  22.7    1.0  1  Sugar_tr  Sugar (and other) transporter
    1.9e-16   59.9  19.0    1.9e-16   59.9  19.0    2.3  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        0.1   11.0   9.5      0.015   13.7   4.9    1.7  2  TRI12     Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.0  22.7  4.8e-103   2.9e-99       3     452 .]      23     474 ..      21     474 .. 0.96

  Alignments for each domain:
  == domain 1  score: 333.0 bits;  conditional E-value: 4.8e-103
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH....HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTS CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskee.ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkn 100
                   a+lgg  +g+d  + ++ l +++f k+fg+ ++ ++  e  s+++++  ++ ++  ++G+l+agl+gd+fGR k+++ia+++++ig+++qa a    
  KKY17764.1  23 AYASLGGATYGWDANYWSGLLGMTQFCKDFGVFNQAADAWEiPSSWQSAGSGAPQAAIACGCLVAGLIGDKFGRIKTFMIASIIAIIGIIIQASAF--- 118
                 6799*****************************9999887789*****************************************************... PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHH CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylv 199
                 s+++++vgR++ G+++G++++ vP+y++E Ap+k+Rg lv  yq+++ +G  +a ++++ l +  +++ +r+ + lq+++++++li++++lPESPr+l+
  KKY17764.1 119 SYWQILVGRMVNGVSMGIICNAVPIYQAECAPAKIRGSLVNAYQFWLLVGGTMAVTVNYCLYTRVDQWAYRVVIILQFLIPIVMLIGVFVLPESPRWLI 217
                 *************************************************************666666******************************** PP

                 HTT-HHHHHHHHHHHHHC..HHHHHHHHHHHHHHHHHHH.......HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHH CS
    Sugar_tr 200 ekgkeeeakevlaklrge..edadrelaeekdsleaeqeee..kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvti 294
                 +kg++++a +vl+ lr    + + +e ++  ++ e eqe++    +w   ++  t+++r+ i+ ++q++qq  G+ +i++ys t+++++g+++s+ +  
  KKY17764.1 218 KKGRRDDAAKVLQLLRRGtpAAVIEEEVNLLAAAEDEQERNfhASTWLDCFRG-TNLRRTAIATGVQCLQQAQGNSFIINYSITFLQQIGITDSYKILC 315
                 *************9555436888999999999999998888988999999999.56******************************************* PP

                 HHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHH CS
    Sugar_tr 295 ivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiava 393
                 ++++vn +++ +a++++d++GRR+ll+ Ga+++ i ++ ++  +  + ++++    +a+++++l+ +  al+w++++w++ sE++++++R k+++ia++
  KKY17764.1 316 LLYFVNCLSSAFAFYFSDKIGRRPLLFGGALICGISMFSVA-GVTGYDEGNQQSLKGALAALFLWQFTQALTWASCVWIVTSEVSTLHLREKTITIATF 413
                 ****************************************9.7777888877778999***************************************** PP

                 HHHHHHHHHHHHHHHHHCHHH..T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 394 vnwlanflisllfpiiteaig..ggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 + + + +l++++ p++++a g  +g v++++a++ ++++ ++ f +pe kgr+lee++elf
  KKY17764.1 414 SGFCIGVLVTFINPFMQGAPGnlAGRVGFIYAAFSIAAAAWTAFMLPEMKGRSLEELDELF 474
                 *********************9999*********************************997 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9  19.0   3.2e-20   1.9e-16      40     322 ..      75     391 ..      25     400 .. 0.79
   2 !   13.8  17.0   3.3e-06      0.02       5     179 ..     283     464 ..     277     496 .. 0.72

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 3.2e-20
       MFS_1  40 lyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailg 137
                 +  ++ a + l++G ++d+fGr ++++++ ++ ++g +++  +  s+w +lv+r++ G+ +g++  a+ ++ a+ +p + rg+ +  ++    +G  ++
  KKY17764.1  75 APQAAIACGCLVAGLIGDKFGRIKTFMIASIIAIIG-IIIQASaFSYWQILVGRMVNGVSMGIICNAVPIYQAECAPAKIRGSLVNAYQFWLLVGGTMA 172
                 455677888899************************.55553247899*************************************************** PP

       MFS_1 138 pllggllasslg...Wravfyilaivsllafvlfllllpeepperkrkspkeee..............................kgtgpaplvpawkal 203
                   +   l++ +    +r+v ++  ++ +++++    +++ ++++r+  ++ ++                               ++  ++++++ w   
  KKY17764.1 173 VTVNYCLYTRVDqwaYRVVIILQFLIPIVMLI---GVFVLPESPRWLIKKGRRDdaakvlqllrrgtpaavieeevnllaaaedEQERNFHAST-WLDC 267
                 ********999977788888888888888877...777788888888877777788*******9999999888888888888877777777777.9999 PP

       MFS_1 204 lkdpvlw....illialllfffgfsglltllplylqevlgls.glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt 297
                 ++   l     +  + +l  + g+s++  ++ ++  ++ g++ ++ +    l ll++v++ ++ +a ++sd++grr+ l+ + l++ ++ +++a +  +
  KKY17764.1 268 FRGTNLRrtaiATGVQCLQQAQGNSFIINYSITF-LQQIGITdSYKI----LCLLYFVNCLSSAFAFYFSDKIGRRPLLFGGALICGISMFSVAGVTGY 361
                 9999994332222222222244555599999998.999999944333....6666666666677888999**999666666666666666666666666 PP

       MFS_1 298 .....ssavllllvlvliGfglgfvfpsll 322
                      +s   +l++l+l+ f+++++++s  
  KKY17764.1 362 degnqQSLKGALAALFLWQFTQALTWASCV 391
                 88886555566669999******9987765 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3.3e-06
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa......sslw.lllvlrvlq 95 
                 ++l  ++ + ++++++++  ++ gi+ s + +l+ ly++  +++s ++ ++sd++Grr++l+ g+l+ +++ + ++ ++      +++    l++ +l 
  KKY17764.1 283 QCLQQAQGNSFIINYSITFLQQIGITDS-YKILCLLYFV-NCLSSAFAFYFSDKIGRRPLLFGGALICGISmFSVAGVTgydegnQQSLkGALAALFLW 379
                 6788888888888888877788897777.5667999998.99*****************************44444443566667556669******** PP

       MFS_1  96 Glgagalfpagaaliadwfpk.eergraigllsa.gfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepper 179
                  +++++ +++++ +++  ++    r + i +++  gf +G++++  + +++  + g    r+ f+ +a+  + a++     ++ ++ + 
  KKY17764.1 380 QFTQALTWASCVWIVTSEVSTlHLREKTITIATFsGFCIGVLVT-FINPFMQGAPGnlaGRVGFIYAAFSIAAAAW---TAFMLPEMKG 464
                 ***********98777766666*******999986777777666.4444444333344477777777777777655...4444444333 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   4.9   2.5e-06     0.015      92     239 ..      81     228 ..      66     232 .. 0.74
   2 ?   -1.3   0.1     0.092   5.5e+02      71     117 ..     302     347 ..     277     426 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.5e-06
       TRI12  92 avsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpa.gasplfvgelmsnktkflgllivsipvvvtsglspylgqrl 189
                 a   lv g + d+fgr    +++ i+ ++g i+ ++a  +  +l    + gv+ g    a p++  e    k  + g l+ +     + g +  +    
  KKY17764.1  81 ACGCLVAGLIGDKFGRIKTFMIASIIAIIGIIIQASAFSYWQILVGRMVNGVSMGIIcNAVPIYQAECAPAK--IRGSLVNAYQFWLLVGGTMAVTVNY 177
                 67789***********98888899*******************************75268899999987665..5577766665554444444444444 PP

       TRI12 190 aiqg.swrwifyiyiitsai..avllivvwyyppsfaqlhgkkvrkreelakl 239
                 ++     +w + + ii+  +   v+li v+  p s + l  k   +r++ ak+
  KKY17764.1 178 CLYTrVDQWAYRVVIILQFLipIVMLIGVFVLPESPRWLIKK--GRRDDAAKV 228
                 443303467777777776542257788899999999888643..467777776 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.092
       TRI12  71 lqdvgqsensslfstlwttgqavsilvmgrltdrfgrrpfvilthil 117
                 lq++g ++   ++  l+ +   +s      ++d++grrp++    ++
  KKY17764.1 302 LQQIGITDSYKILCLLYFVNC-LSSAFAFYFSDKIGRRPLLFGGALI 347
                 677777777777777766544.4444455678888888877655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       854  (0.0476323); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.49
# Mc/sec: 3264.39
//
Query:       KKY17765.1  [L=435]
Description: putative alpha amylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-40  140.0   0.0    1.8e-40  139.5   0.0    1.2  1  Alpha-amylase  Alpha amylase, catalytic domain
    1.9e-11   44.1   0.0    5.9e-11   42.5   0.0    1.8  1  DUF1966        Domain of unknown function (DUF1966)


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.5   0.0     2e-44   1.8e-40      16     337 .]       1     294 [.       1     294 [. 0.87

  Alignments for each domain:
  == domain 1  score: 139.5 bits;  conditional E-value: 2e-44
                    CT-SCEEE-B-CE...........-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHSTTSGGGCCC- CS
  Alpha-amylase  16 LGvtaiwlsPifk...........spqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkkkgepkrdyyi 100
                    +G++aiw+sPi             s +a+hgY+++d  +++ +fGt++dl  L++++h++++ ++lD+V+NH +++ + ++ +++   +p +   +
     KKY17765.1   1 MGFDAIWISPIKIcsvqniegdtdSGYAYHGYWTNDPFELNSHFGTADDLLSLSDAVHARNMSIMLDVVINHFASNTDSSSVDYSAYPSPFNTASA 96 
                    8**********8899***********************************************************9999877777766666555555 PP

                    E......ESS-STTC-TTTTCSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCC.CCCCCCTTT-SEEEETTCCCTTTCCCCHCCHCCHHHHH CS
  Alpha-amylase 101 wkegkeekeppnnwkslfdgsaweydekaqeyylhlflkklpdLnteneevrkelkd.vvkfwlekgidGfRlDvvkhvskvealesngeflheft 195
                    ++      +pp     + ++++ +y++          + +lpd++te  ++ + + d vv+++   + dG+RlD+vk+++           l  f+
     KKY17765.1  97 FH------QPPCS-IDYSNQTSAQYCWLV-----VSPAPSLPDIDTEDTDTLNPIVDsVVTLVETYSFDGIRLDTVKQLPP--------AALSAFQ 172
                    44......34544.457788888888887.....569********************8888888888**************........999**** PP

                    HHHHHHTCCGTT-EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS-HHHHHHHHHHHHHHS-CCCTTCEEES--TTS-- CS
  Alpha-amylase 196 qalnetvasrkevmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlksisakklkellkkwlkaleeaaeeavtflgnHDqeR 291
                     a+         vm+ gE+++++ +  +v ++++ l++   +++p +    +a+++  l s  + ++++++++   + ++  +  +tfl+n Dq+R
     KKY17765.1 173 SAVG--------VMVTGENYDTSIS--YVASYQSSLDSL--VNYPLYWPLIDAFNSTSLGS--LTEVSSTISNEEYSFSD-INVLTTFLDNPDQPR 253
                    9999........89******97664..566666655555..99999999999885555555..99*************99.9999*********** PP

                    HHHHTTSSTTTTHHHHHHHHHCCCTSSSEEEEETTCCCT----STT CS
  Alpha-amylase 292 ilsrlgddsaeaekklklaaillltlrGvpviYyGeEigmtggkdp 337
                    ++s+ +d       ++++a +++++ +G+pv+YyG E+ +tg  dp
     KKY17765.1 254 FASVSNDIT-----RDQNAITFTFLHSGIPVVYYGFEQRLTGLSDP 294
                    ******999.....8**************************98876 PP

>> DUF1966  Domain of unknown function (DUF1966)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   6.6e-15   5.9e-11       4      68 ..     342     402 ..     339     419 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 6.6e-15
     DUF1966   4 sdkstlalrKgpegsqvvtvlsnkGssgssytlslkssgyaagtevvdvlsCksvtvdssgeltv 68 
                 ++++ lal++gp    v++v++n G+s++ +  ++++s++ +gt+v+d+++C++ tv+s+g  + 
  KKY17765.1 342 ANDNYLALQRGP----VLFVVTNIGASAEDTGYTVPNSQWDQGTQVLDLINCETATVGSEGGFES 402
                 57899*******....********************************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.34s 00:00:00.95 Elapsed: 00:00:00.53
# Mc/sec: 2456.83
//
Query:       KKY17766.1  [L=893]
Description: putative aspartyl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-76  255.5   0.2    5.6e-75  252.3   0.0    2.1  2  tRNA-synt_2      tRNA synthetases class II (D, K and N)
      8e-21   74.3   0.0    1.3e-20   73.6   0.0    1.3  1  DUF2156          Uncharacterised conserved protein (DUF2156)
      4e-06   26.7   0.0    9.3e-06   25.6   0.0    1.6  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
     0.0012   18.4   0.7       0.13   11.7   0.0    2.6  3  tRNA-synt_2d     tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1     0.041   1.9e+02     154     197 ..      27      76 ..      10     174 .. 0.80
   2 !  252.3   0.0   1.3e-78   5.6e-75       3     313 ..     222     545 ..     220     546 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.041
                  CHTTTTTSEE-SSS-EEEEHHHHHHHHHTS......-SS--HHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxx RF
  tRNA-synt_2 154 efvirrnskdlkkpfkrltykeaieklnei......gkdldkaderalvk 197
                  +++ +r++++l+++ +r++ +e +++   i      + d+d+++ r+  +
   KKY17766.1  27 QKHETRKQDELSRKVQRIEADEQLKEKAAIeyaearQSDSDEQQARYGPE 76 
                  33344445899999999998888888555577777788999999998776 PP

  == domain 2  score: 252.3 bits;  conditional E-value: 1.3e-78
                  CHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE....-E-S-SHHHHHHHHHCTHSEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   3 elrlknryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeff....aLtqspqlylellivagidrvfq 96 
                  ++r+ nr++dlrt+  ++++++ s + +++r+yl+++gfiei+tP L+ s+te+ga+ Fkv        +f    +L+qspql ++++i+a ++rv++
   KKY17766.1 222 KTRMANRIIDLRTPTSQAIFKINSGICNLFRTYLDSQGFIEIHTPKLQPSATESGAEVFKV-------GYFgrtaFLAQSPQLAKQMCISADFGRVYE 312
                  6899*********************************************************.......66667779********************** PP

                  EEEEE--S--BTTB-S-CEEEEEEEEET-SCHH.HHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTS...EE-SSS-EEEEHHHHHHHHHTS....... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx....... RF
  tRNA-synt_2  97 iaraFRaEdsrtdrhlaEFtqieaemsfieeed.imqvleelikslvkevlessakdiefvirrns...kdlkkpfkrltykeaieklnei....... 183
                  i+++FRaE+s+t rhl+E+t +++em+  ++ +  m++l++ +ks+++ v e+  kdie  ++r         ++ + +++k+ i++ln+        
   KKY17766.1 313 IGPVFRAENSNTHRHLTEYTGLDIEMALNKDYHeAMRTLDNTFKSIFRGVYERYGKDIEIIKERYPhddLVWLEETPVIPFKDGIKILNDSgwevdgr 410
                  ***************************9877666************************9999998875322234599***********9998887776 PP

                  ....-SS--HHHHHHHHH.........HS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHCCHHSSSGG CS
                  ....xxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 184 ....gkdldkaderalvk.........keknepvfvtdfPaelkpFyarkeeddkkltesyDllingvElvgGslRiedpeeleeklkskgldeeaee 268
                      +   +   +ra  +         k k++ + + +fPa+ +pFy+  +e+d+k t+s+D++++g E+++G +Ri+d   l++++ ++g+     +
   KKY17766.1 411 kqadD---EDLSTRA--EirlgqlikeKYKTDYYILDKFPASARPFYTMPDERDSKFTNSFDVFLRGQEITTGGQRIHDAAFLKKRMAAQGMA---TD 500
                  64442...2222233..14466677778999999999********************************************************...** PP

                  GGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 269 kfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                  ++ +y+ea+e+ apph+G g+Gl+R+vml+l++ ++r++++FP+ 
   KKY17766.1 501 SMTEYMEAFEWAAPPHAGAGVGLERIVMLMLNLGDVRNASLFPRD 545
                  *******************************************95 PP

>> DUF2156  Uncharacterised conserved protein (DUF2156)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.0   2.9e-24   1.3e-20      14     298 .]     592     872 ..     583     872 .. 0.88

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 2.9e-24
                 HHHHHCCHCCEEE.ECCTTEEEEEEEECTCEEEECS-EE.CCGHHHHHHHHHHHHHHCTSEEEEEEE-HHHHHHHHH.CTEEEECCCEEEEEEHHHHHT CS
     DUF2156  14 snlalwrdksyyf.spsgdalvayrvkggvalalgdPvGdpeawpeaieeflelaaehgwrpafygvseelaellae.lglsalrlgeeavvdledftL 110
                 sn   ++d + ++  +   a++ y    + a+ +g+P++d  ++p++i+ fl++ +++ +rp+++ v +e+ e+l e lg+++l   +e ++++ +   
  KKY17766.1 592 SNTSWLDDRYTVWrCNRTGAAIGYAADRDFAIIMGNPLCDSIQYPSVIACFLKYLRQQRLRPIWILVGQEVEEILGEkLGWRSLTCVAEERLSVGE--- 687
                 5555667777777799***********************************************************996778877777777766665... PP

                 TSGGGHHHHHHHHHHHHCTECEEEEEGGG.H-HHHHHHHHHHHHHHHHHTTCHHHHCCCHHHHCHHHH.TSEEEEEEE.TTEEEEEEEEEEECTTTEEE CS
     DUF2156 111 sGkkfrnvRnainraeraGytveverisd.lspellaelkeiseeWlkqkeatEkgfslglfdelddl.dlrglvvrdeegrivAftsfeplngkdgls 207
                      ++v ++ ++a++aG++v++  +s+ ++++  +++++  eeW +++  t k+  +  + +++d+ + r ++ +d++g + +++++ +l  k g+ 
  KKY17766.1 688 ----AQSVAKKERQAQNAGVQVSEIGVSEpVPEDFKKRVEQKVEEWKANR--TGKQVHITEVVPFQDEvHRRYIYGEDKDGNLCGLIIMAQLAPKYGFQ 780
                 ....5666666677777777755444433159999**************9..88888888888888887999999******************99**** PP

                 EEEEEE-TT.STTHHHHHHHHHHHHCHHTT-SEEEEEEE................HHHHHHHHHHHHHTTTCHHHHHHHCT--CEEEEEEEE CS
     DUF2156 208 ldlmRrdpdapnGlmefliaelaeelkeegveyvsLgfaplagl.geregagllerllrllleflerdygfegLrrfKlkyqPeweprYlay 298
                 + +    p apnG++e+lia++++ + ++g+e v +g+ + ++l  +r+ +++  + l+ ++++  + +g+    +f +k+     p Y++y
  KKY17766.1 781 VKFALEFPSAPNGTIELLIANALQSMAKSGIETVTFGAGAQSELkVARNLDKVRSKTLEKVYKTITEQLGLVAKSQFREKFGTFNDPLYICY 872
                 ********************************************8899999****************************************8 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   2.1e-09   9.3e-06       4      75 ..     104     187 ..     101     188 .. 0.92

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2.1e-09
                      EEEEEEEEEEEETTEEEEEEEETTEEEEEEEET......HHHHHHHTTS-TTSEEEEEEEEEECTTS.......SEEEEEEEEEE CS
  tRNA_anti-codon   4 aGrvtsisdrsggkvifidlrDgtgriqvvlfr......eeatklaenlkeGdvvrvtGrvkrrpgg.......elelkveeiel 75 
                        r+++ + r+++k++f++ r    +iq vl        e +  +ae+l+++++v v+G++++ ++         le+ ve++ +
       KKY17766.1 104 IVRIHNCR-RQSAKLAFFVFREQIHIIQGVLAFeenkisEHMIHWAEHLPRETLVHVRGTLQKPKDAvrdatieNLEILVESLHV 187
                      57999998.*******************999988******************************988888888889999998876 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0059        27     102     155 ..     308     365 ..     292     379 .. 0.74
   2 !   11.7   0.0   2.9e-05      0.13     191     233 ..     494     538 ..     491     549 .. 0.81
   3 ?   -2.8   0.0      0.79   3.5e+03     136     171 ..     833     867 ..     830     868 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0059
                   EEEEEEEEEEBSST.-SSSB-SEEEEEEE...EEEETT--HHHHHHHHHHHHHHHCTS CS
  tRNA-synt_2d 102 ikiisigrvfRrda.vDathlaeFhqveg...lvvdenvsladlkgvleellkklfga 155
                    ++  ig vfR ++    +hl e++ ++    l  d +  +++l  +++++++ ++++
    KKY17766.1 308 GRVYEIGPVFRAENsNTHRHLTEYTGLDIemaLNKDYHEAMRTLDNTFKSIFRGVYER 365
                   578889*******96778999***9887531233455668999999999999888765 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2.9e-05
                   EEEEE-HHHHHHTT-...TTSEEEEEEEEHHHHHHHHHT-SSGHH CS
  tRNA-synt_2d 191 gaGmvrpevleavgid..eevsgfafGlGveRlamlkygieDiRe 233
                     Gm  ++++e ++       + ++ G+G+eR+ ml++++ D+R+
    KKY17766.1 494 AQGMATDSMTEYMEAFewAAPPHAGAGVGLERIVMLMLNLGDVRN 538
                   56888888888886644667778899******************6 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.79
                   --HHHHHHHHHHHHHHHCTSTEEEEEEECEETTEEE CS
  tRNA-synt_2d 136 vsladlkgvleellkklfgaevkvrfrpsyfpfteP 171
                   v+ ++l +v +++ ++l g  +k +fr+++  f  P
    KKY17766.1 833 VRSKTLEKVYKTITEQL-GLVAKSQFREKFGTFNDP 867
                   56678899999999999.9999******99999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (893 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1079  (0.0601818); expected 358.6 (0.02)
Passed bias filter:                      606  (0.0338); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.37s 00:00:01.17 Elapsed: 00:00:00.53
# Mc/sec: 5085.19
//
Query:       KKY17767.1  [L=623]
Description: putative sphingomyelin phosphodiesterase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-14   53.7   0.1    6.3e-14   52.9   0.1    1.4  1  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.1   3.5e-18   6.3e-14       2     204 .]     127     392 ..     126     392 .. 0.64

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 3.5e-18
                  EEEEEESBTB..............................................TTCCTHHHHHHHHHHHHHHH.TTESEEEEESTSSSSS..... CS
  Metallophos   2 rilvigDlHl..............................................algggqlddllkllddllre.ekpdlvllaGDlvdrg..... 47 
                   +++i+D+H+                                              +l++  ++++++         +++ + +++GD+v++      
   KKY17767.1 127 QVVHISDIHIdrfyetgasynctkniccrpytaadapgntsypageygnvncdtpiSLEESMYNAIQT-------LvPNASFTIFTGDVVEGAvwlvn 217
                  69**********************99999999977777765555544443333333333333333333.......14789********6666555544 PP

                  ..HHHHHHHHHHHHHHHHTSEEEEEC-TTSCHHH.HHHHHHHHHHHHHHHHEHH...HCEEETSEEEEEETTE....EEEEEEESECEEE........ CS
  Metallophos  48 ..dlekellellaalvkypipvylllGNHegfee.ellnkygylgifsepwrsd...aevfnnlplaslgsgs....lkvlllhGgspel........ 127
                    ++  +l++ ++++ ++ + vy + GNH+     +++++ +  ++   +w +    + + +++ + +  +      + v    G+   l        
   KKY17767.1 218 etEVTDDLNDAFSRMTAL-NLVYGVVGNHD-AAPvNSFPPAAIDTTIDSQWVYStlsNAWEQWIGSTAAATEAnygaYSVKYPSGN---Lrlisfnsq 310
                  447777788888888886.568********.3333555554444444666666644433333333333222223222122222222...133334554 PP

                  THHHHHHHHHHHSCHHHHCC.HHHHHH..HHHHTTCSEEEEEESSESSCSSSCSCCHHHHHHHHHHTT..ESEEEEESSSSE CS
  Metallophos 128 lvsldklgslnleleapepg.dewlkd..lekrekadwvivlgHsplyrgsgylfgdealedllkkyg..vdlvisGHtHvy 204
                  l+  ++   +++  e++ +    wl    + +++ ++ v ++gH+p+  g   + g++ +  +  +y   + + ++GHtH++
   KKY17767.1 311 LYYKENFWLYEKTMETDPDSqFAWLVAelNAAESAGERVWLMGHMPMGAGDALHDGSNYFNQIVTRYSdtIAALFFGHTHKD 392
                  3333334444444333333379999999*********************************9988888899999******85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 3929.27
//
Query:       KKY17768.1  [L=276]
Description: putative aspergillopepsin-2 heavy chain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-78  261.7  16.3    4.9e-78  261.4  16.3    1.1  1  Peptidase_A4  Peptidase A4 family


Domain annotation for each model (and alignments):
>> Peptidase_A4  Peptidase A4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.4  16.3   2.7e-82   4.9e-78       1     209 []      72     274 ..      72     274 .. 0.98

  Alignments for each domain:
  == domain 1  score: 261.4 bits;  conditional E-value: 2.7e-82
  Peptidase_A4   1 snwaGavlespesgftsVtgtftvPklslpsggdesaeysasawVGiDGaadtcssallqaGvdftvdsnGeqsydawyewyPayavdfsglavsaG 97 
                   snwaGavl +  +g+t+Vt+++tvP++s+psgg+  +ey+asawVGiDG  dtc++a+lq+Gvdf+v+  +e+ ydawyewyP+ya+df+g+++saG
    KKY17768.1  72 SNWAGAVLIG--TGYTAVTAELTVPTPSIPSGGNDYTEYCASAWVGIDG--DTCDTAILQTGVDFCVE-GSETYYDAWYEWYPDYAYDFTGITISAG 163
                   7*********..*************************************..9****************.888************************* PP

  Peptidase_A4  98 DsvtvtvtatsatsgtvtieNlstgqsvtktlsapssklcgqsAeWivEdfesgg.lvplanFgtvtFtdasattsdgksvglsgatiidieqngtv 193
                   D+v+vtv+ats++sgt+ti +++t+ +v++t+s+++ +lc+ +AeWivEdf++++  vp+a+FgtvtF+ a+at+s+  +vg+++atiidieqn++v
    KKY17768.1 164 DVVKVTVNATSESSGTATIVDETTDTTVSHTFSGETDELCEYNAEWIVEDFYQNDsEVPFADFGTVTFSSATATQSGT-TVGPEDATIIDIEQNNEV 259
                   ****************************************************9999****************988887.****************** PP

  Peptidase_A4 194 ltsvevsgdsevtvsy 209
                   ltsv+v++d+ v v+y
    KKY17768.1 260 LTSVSVTDDE-VIVTY 274
                   ******8888.99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1877.39
//
Query:       KKY17769.1  [L=365]
Description: hypothetical protein UCRPC4_g05402 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-89  299.4   0.5    3.5e-89  299.1   0.5    1.0  1  Glyco_hydro_10  Glycosyl hydrolase family 10


Domain annotation for each model (and alignments):
>> Glyco_hydro_10  Glycosyl hydrolase family 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.1   0.5     2e-93   3.5e-89       8     313 ..      41     359 ..      35     361 .. 0.92

  Alignments for each domain:
  == domain 1  score: 299.1 bits;  conditional E-value: 2e-93
                     HTT..EEEEEESCHGHHCTTHHHHHHH..HH-SEEEESSTTSHHHHCSBTTBEE-HHHHHHHHHHHHTT-EEEEEEEEESSS--HHHHTSCCCHH CS
  Glyco_hydro_10   8 akf..kvgtavsaselegeskekellk..kefnsltaeNemKwealepsegnftfekadklvdfakennmkvrGHtLvWhsqlPdwvkkengska 98 
                     a++  ++gta+++ e +++ k+ ++l+  + +++ t+ N mKwe++ep+ g f+f+ +d+lv++a++n   +r H+LvWh+q+P+w+++ ++ ++
      KKY17769.1  41 ANGklYFGTATDNIEWNDT-KYDSVLNypRLWGQYTPANYMKWEYTEPEPGVFNFTGGDQLVSIANHNRALIRCHNLVWHNQIPTWLTNPSTPWT 134
                     444459********99998.77777665599***********************************************************99999 PP

                     HHHHHHHHHHHHHHHHHHTTTTESEEEEEES-B-TTSCSBE-SHHHHHHTTHHHHHHHHHHHHH-T.....TSEEEEEESSTTSTSHHHHHHHHH CS
  Glyco_hydro_10  99 eeallkrlenhiktvverykgkiyawDVVNEavddnggslresvwyqilGedyiekAFeaAreadp.....dakLyyNDYnieeanakrkavvel 188
                     +e+ll +l++hi+++v++++   yawD+ NE++dd+g ++res+wy+++G++yi  AF++A ea+       +kLyyNDYnie a+ k++a +el
      KKY17769.1 135 NETLLFALHRHITALVTHWAPSCYAWDIANEVLDDDG-TYRESIWYNVTGTSYIPLAFKWAAEAAVaaghpGIKLYYNDYNIEYAGPKSTAALEL 228
                     9***********************************7.9**********************999744444499********************** PP

                     HHHHHHTT----EEEE--EEETTSC..HHHHHHHHHHHHHTTTSEEEEEEEEEECETTSSH....HHHHHHHHHHHHHHHHHHHHCTTTEEEEEE CS
  Glyco_hydro_10 189 vkelkekgvpidgvGiQsHlsvdsp..siseieaalkklaalglevaitELDirvkkssse....eealeaqakrykelvkallevkekitgvtv 277
                     vk+l++++v+idgvG+QsH++v+s   s ++  +++++++alg++va+tELDir + +s+     ++a+e qa++y+++v a+++v+ ++ gvtv
      KKY17769.1 229 VKSLQSQNVKIDGVGLQSHFIVGSStpSRAAQVSNMETFTALGVDVAVTELDIRFTVKSEGyvtnSTAQEIQAQNYEDTVGACKDVQ-RCVGVTV 322
                     *********************99883344555579********************887766899899999*****************.******* PP

                     SSSBGGGSTTHHHSTTEC--SSB-TTS-B-H.HHHHH CS
  Glyco_hydro_10 278 WgvtDkysWlsglkkkeeapllfdsnyqpkp.ayeav 313
                     W++tDkysW+++++++e+a++++d++++ kp  ye++
      KKY17769.1 323 WDFTDKYSWIPQTFEGEGAACPWDEEINVKPhVYEGI 359
                     ******************************9345555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.52
# Mc/sec: 2119.04
//
Query:       KKY17770.1  [L=527]
Description: putative integral membrane [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.17   11.5   1.7       0.41   10.3   1.7    1.6  1  DUF4750   Domain of unknown function (DUF4750)


Domain annotation for each model (and alignments):
>> DUF4750  Domain of unknown function (DUF4750)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.7   2.3e-05      0.41       4      24 ..      70      90 ..      68      92 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 2.3e-05
     DUF4750  4 evllfvlrlllalliVlllil 24
                e++l v+r++la+++Vl+li+
  KKY17770.1 70 EIGLKVIRIFLAVTFVLVLIA 90
                68999**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3587.30
//
Query:       KKY17771.1  [L=536]
Description: putative jumonji domain containing 5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-37  129.3   0.1      3e-37  128.7   0.1    1.2  1  Cupin_8   Cupin-like domain
    1.8e-08   34.2   0.0    2.4e-05   24.0   0.0    2.4  2  Cupin_4   Cupin superfamily protein
      1e-05   25.9   0.0    3.3e-05   24.3   0.0    1.9  1  JmjC      JmjC domain, hydroxylase
  ------ inclusion threshold ------
      0.071   12.8   0.0       0.15   11.7   0.0    1.5  1  Cupin_2   Cupin domain


Domain annotation for each model (and alignments):
>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.7   0.1   6.7e-41     3e-37       3     248 ..     201     503 ..     199     509 .. 0.69

  Alignments for each domain:
  == domain 1  score: 128.7 bits;  conditional E-value: 6.7e-41
     Cupin_8   3 effreyvakskPviikgalkdwpalqkwtddeylleylkekaedvkvsvektpdgeadsfkeneelkfvkpeeeemtfkdfldelearrdtrsep.... 97 
                 +f++ +++k++P+ii++ ++ wpa+++w+++ y l++     + v v+v+++    +d+             ++ m+f+df+++   + +++  +    
  KKY17771.1 201 AFEEHIYSKETPLIITNTMDGWPAIRQWKTKSYWLSQTLGGRRLVPVEVGRSY---TDEG----------WGQKIMKFRDFFSQHILQHENEMLAqdqe 286
                 57799************************977766655555555555554333...2222..........23567777777666333333222222344 PP

     Cupin_8  98 ..yaylqnanlasefpelk...............edsdlpfateafgkkpe.....avnlWlGnsasvsslHkDhyeNlycvvrGrKkftLfpPsdapf 174
                   + yl++  l +++p l+                + d p+a++ f+  p        n+W+G++ ++s lH+D+y+Nl+++v G+K ++L+ P+++ +
  KKY17771.1 287 wqTGYLAQHTLFEQIPPLRrsiltpdyvyitpppPTPDSPVAKSTFTATPIepgtaLQNIWFGPPWTISPLHHDPYHNLLAQVFGKKYIRLYAPQYSSR 385
                 44889999***********6666666555555552244555555554333245554779**************************************** PP

     Cupin_8 175 lyeaslsptedgtv.........................................vssvdve.......epdlekfprlkdakkalevtlnaGevLylP 225
                 l ++s  +t+  ++                                         +s++d+        e  +e +p l+++  ++e+ l++Ge+Ly+P
  KKY17771.1 386 LFPRSATETAPDASlnneasipavnryaqtshpdrpddsvikpeapepktidmsnTSQIDFSqietspfEDWDEVYPGLSSV-PYVECVLEEGEMLYIP 483
                 *777433333333344455555555555556666666666677777777777777555555522222333334789999999.9*************** PP

     Cupin_8 226 alWfHeVkslaeeplhlavnywy 248
                  +W+H+V+s   + + ++v +w+
  KKY17771.1 484 IGWWHYVRSC--S-TGISVSFWW 503
                 ********88..5.48******9 PP

>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00048       2.2     130     168 ..     357     395 ..     344     411 .. 0.85
   2 !   24.0   0.0   5.3e-09   2.4e-05     174     207 ..     468     501 ..     455     508 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00048
                 SEE-SSEEEEEEEEC-EEEEEE-SCCCTTSSSEE--TTC CS
     Cupin_4 130 pHyDdyDVfllQleGrkrWrvykptvpelelkseeplki 168
                  H D+y  +l Q+ G+k+ r+y+p + +  + +++++++
  KKY17771.1 357 LHHDPYHNLLAQVFGKKYIRLYAPQYSSRLFPRSATETA 395
                 5**********************9888877777766655 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 5.3e-09
                 -SEEEEE-TT-EEEE-TT-EEEEEBBT-CCEEEE CS
     Cupin_4 174 pvedfvLepGDlLYlPrgviHqgvaedesltlSv 207
                 p+ + vLe G +LY+P g++H+ ++ ++++++S+
  KKY17771.1 468 PYVECVLEEGEMLYIPIGWWHYVRSCSTGISVSF 501
                 7889*********************999988886 PP

>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   7.4e-09   3.3e-05      77     112 ..     466     501 ..     425     503 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 7.4e-09
                 T---EEEEE-TT-EEEE-TT-EEEEEESSSEEEEEE CS
        JmjC  77 gipvyrfvqkpgefVfvfpgayHsvfnlgfniaeav 112
                  +p+ ++v ++ge+++++ g++H v ++ + i++++
  KKY17771.1 466 SVPYVECVLEEGEMLYIPIGWWHYVRSCSTGISVSF 501
                 59*******************************987 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.5e-05      0.15      38      63 ..     471     496 ..     466     504 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.5e-05
                 EEEEETTEEEEE-TT-EEEEEE-SSS CS
     Cupin_2  38 eveleaGdsvyfpagtpHrfrNtgde 63 
                 e++le+G+++y+p g +H++r  +++
  KKY17771.1 471 ECVLEEGEMLYIPIGWWHYVRSCSTG 496
                 689******************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.49
# Mc/sec: 3295.41
//
Query:       KKY17772.1  [L=722]
Description: putative dna replication initiation factor cdc45 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.1e-157  524.3  16.2    3.7e-87  293.1   0.0    4.0  2  CDC45            CDC45-like protein
  ------ inclusion threshold ------
      0.021   12.9   0.0      0.041   12.0   0.0    1.4  1  DUF2828          Domain of unknown function (DUF2828)
       0.59    9.4  36.0       0.44    9.8  19.6    2.1  2  BUD22            BUD22
        1.1    7.4  23.4       0.48    8.6  10.8    2.1  2  Nop14            Nop14-like family
          2    8.2  23.8        4.9    7.0   9.3    2.3  2  SPX              SPX domain
          3    8.0  10.8        3.1    7.9   4.2    2.6  3  CPSF100_C        Cleavage and polyadenylation factor 2 C-term
        5.2    6.5  13.6          2    7.9   5.5    2.2  2  Lin-8            Ras-mediated vulval-induction antagonist
        9.4    4.7  34.0        1.6    7.3  19.3    2.1  2  TFIIF_alpha      Transcription initiation factor IIF, alpha s


Domain annotation for each model (and alignments):
>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.1   0.0   1.6e-90   3.7e-87       7     288 ..       3     359 ..       1     371 [. 0.90
   2 !  216.5  24.3   2.6e-67   5.8e-64     377     635 ..     369     717 ..     364     718 .. 0.95

  Alignments for each domain:
  == domain 1  score: 293.1 bits;  conditional E-value: 1.6e-90
       CDC45   7 ldvDalCAariLtsLLkkdliphkivPVsGyedlekaleelvee.....geelrsvvllnlGalvdleellelee............gvevyViDshRP 88 
                 +++Da+CA+riLt+LLk+d+iphki+PV Gyedl++a+e l+++     g+++++vv+l++G+lvdl + l++++            gvev+V+D +RP
  KKY17772.1   3 VNPDAICATRILTALLKRDFIPHKIHPVGGYEDLTRAGEALIQPmkqsqGGSGGVVVCLGVGGLVDLGDALGFDSsegdeaaeidfsGVEVWVFDKRRP 101
                 689*********************************************99************************9************************ PP

       CDC45  89 wnleNlfgss......................eekerivvfDDgdieeeleeereayealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedee 165
                 wnl N+fg+                       ++k++i+vfDDgdieeel++e+ea++al +++e+d+    ++ +++     +++e+ d       e 
  KKY17772.1 102 WNLGNIFGGFppledgrpttgvqlgkigksyrSGKGGIIVFDDGDIEEELATEKEAFFALADMPEVDDAG--SDIDSET----SDDENAD-------E- 186
                 ********99**********************9*********************************7222..2222222....2111111.......1. PP

       CDC45 166 eskkkrk.sksdeeeesddddersrkrrrse................................psakklrrqlkkerrkyeavlekyysqgtsygesvs 231
                 ++++krk  ++d ++e++ ++er+r+rrrs+                                ps+ +lr++ +k+rrk++++l++yy++g sy+e+vs
  KKY17772.1 187 QQSRKRKsVSDDFDDEDSGNEERPRQRRRSNsgssiaspsrprqmnsvrvlespspgnpepeqPSSVQLRKRFLKLRRKHQETLRAYYNMGMSYSEPVS 285
                 12233332455666678888999999999999999999999999999****************9*********************************** PP

       CDC45 232 slmYsLaselgredndlLWlAIvGltslelserisae.................ryerlrallrdeVrrlnpss 288
                 sl+YsLas+lgredndlLWlA+vG++slels+++ ++                 r ++++++l+deV+rlnp+ 
  KKY17772.1 286 SLLYSLASDLGREDNDLLWLAVVGVSSLELSSHMPSDlhnpmvphshhtswqvtRHKQIQQVLMDEVHRLNPER 359
                 **********************************999***********************************73 PP

  == domain 2  score: 216.5 bits;  conditional E-value: 2.6e-67
       CDC45 377 eklekiapeygLddlvye.........sFvrsygyraelsAaDvvealtAlLevgkgveaksekeaeesekeseeeeeeeeeeeaeeeekeeeewvknF 466
                 ++l+++a  yg++++v++         +F++s+g++a+lsA+Dvv  ++A+L+vg +++ +    + +       e+ +++++++++ ++++++ ++nF
  KKY17772.1 369 TELSQYAGLYGIEGIVPPggrsgkegwGFIKSWGWKASLSAIDVVTLVGAILDVGPHHAIS----SVA-----GPETGASSQRSTASLADDQRNTTNNF 458
                 5799***************************************************944211....111.....134456677778888999******** PP

       CDC45 467 weAydaLdkknidlLkkglelaqslqraivrtgtsliekkqirtlrafrlavlkdgpdlelFth.paaLtkLalwllealresekekkkkkkkllPlVl 564
                 + AydaL++++ +lL ++++laq+l rai+rtgtsl++k+qir+lrafr+av+k+gpdl+lF+  ++aL kLa wl +alr+  k      k + PlV+
  KKY17772.1 459 FPAYDALAPTHPTLLVSAVPLAQHLSRAILRTGTSLLSKNQIRHLRAFRMAVVKEGPDLDLFAGsVGALIKLAGWLDQALRATGKGGY--GKDDVPLVV 555
                 **************************************************************9779*******************976..579****** PP

       CDC45 565 asldeergtylVvGvtgkaasggdve......................................................................... 590
                 a+ld ++g+y+V+G++++++s+ + e                                                                         
  KKY17772.1 556 AALDATEGSYVVIGLGAGTNSYLQEEagiseakrkekeekrkrkdeereqrrkereerketerraraldrdsdeedetesepsdsdsdsdsdassppts 654
                 *****************999999988************************************************************************* PP

       CDC45 591 ..................kNrFglaFqevaeetgarvridsFessvievrkeDlakFlekLsl 635
                                    NrFg+aFqev ++t+a+++ d+F+++v++v+ke+l+ Fle+Ls+
  KKY17772.1 655 pssslhgenavgsqrrrlGNRFGHAFQEVSASTNADIKVDHFDHCVVQVKKEELGTFLEALSM 717
                 *************************************************************98 PP

>> DUF2828  Domain of unknown function (DUF2828)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.8e-05     0.041      63     194 ..     455     625 ..     446     643 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.8e-05
     DUF2828  63 regfyraalWLaenHPrTllaNl...kalvrpviekkak.........................................kkdvkegvshGywKDllni 117
                  ++f+ a+  La +HP  l++ +   ++l+r+++++ ++                                         ++  + + + Gy KD + +
  KKY17772.1 455 TNNFFPAYDALAPTHPTLLVSAVplaQHLSRAILRTGTSllsknqirhlrafrmavvkegpdldlfagsvgaliklagwlDQALRATGKGGYGKDDVPL 553
                 567888888899999988887762224577777776666899999999999999999999999999999999999999998899999999****99999 PP

     DUF2828 118 lalavegel...vlkdpkkvlnvkkekkkeekkkkkkkkkkekkkerkkeekekkeeekeeakekrkekeaeraekllek 194
                 ++ a++ ++   v+      +     +++  +++   +++k+k+  +++++k+k+ee++++ ke++++ke+er++++l++
  KKY17772.1 554 VVAALDATEgsyVV------IGLGAGTNSYLQEEAGISEAKRKE--KEEKRKRKDEEREQRRKEREERKETERRARALDR 625
                 99988777632222......211111111111111111111111..1111222222222222222222222233333322 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   8.4    0.0047        11     183     257 ..     165     226 ..     136     262 .. 0.40
   2 ?    9.8  19.6    0.0002      0.44     182     257 ..     586     658 ..     569     677 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0047
       BUD22 183 keeseddeeeeeededdedaeedeedeeaeerelaqydgllasddededeyneetdeesseesdssdsses.ases 257
                 +e +++ ++ ++e +dde+      ++e+++r+ ++  +  + dded++      +ee  +++++s+s +s as+s
  KKY17772.1 165 PEVDDAGSDIDSETSDDEN------ADEQQSRKRKSVSD--DFDDEDSG------NEERPRQRRRSNSGSSiASPS 226
                 2222333333333333222......22333333333322..26666666......122222222222222201111 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0002
       BUD22 182 ekeeseddeeeeeededdedaeedeedeeaeerelaqydgllasddededeyneetdeesseesdssdssesases 257
                 e++++e++e+ + +de+ e+ +++ e+++++er+++++d+  +sd+ede  ++e +d++s+++sd s++  s s+s
  KKY17772.1 586 EAKRKEKEEKRKRKDEEREQRRKEREERKETERRARALDR--DSDEEDET-ESEPSDSDSDSDSDASSPPTSPSSS 658
                 2233333333333333333333345666777788888877..67777776.4444444444444444444444444 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   4.7    0.0033       7.3     371     410 ..     170     209 ..     128     272 .. 0.50
   2 ?    8.6  10.8   0.00021      0.48     342     399 ..     581     648 ..     553     693 .. 0.42

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0033
       Nop14 371 eeeeedeeeeedeeeeeeeeededdlsdleseeeeeedel 410
                 + ++ d+e ++de+++e+++ + ++ sd+ ++e++ ++e 
  KKY17772.1 170 AGSDIDSETSDDENADEQQSRKRKSVSDDFDDEDSGNEER 209
                 1111111111111111111111111111111111112221 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00021
       Nop14 342 a...........taeeeeeededdfeedddlveseseeeeeeeeedeeeeedeeeeeeeeededdlsdl 399
                 +           +++++ +++e+++  +++++ +e e      + d ++eede e+e +++d+d++sd 
  KKY17772.1 581 EagiseakrkekEEKRKRKDEEREQRRKEREERKETERRARALDRD-SDEEDETESEPSDSDSDSDSDA 648
                 0222212111111111111111111111111111111111111111.1111111111122222222222 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   6.5    0.0025       5.5      75     162 ..     175     261 ..     136     286 .. 0.57
   2 ?    7.0   9.3    0.0022       4.9      68     158 ..     585     673 ..     561     709 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0025
         SPX  75 sgnsaadasssepkdeae...slprrsplsrssrssssygglvssppsansssssddssesnpa......dssssssssesesssssspsllrrlfs 162
                 ++ +++d          e   ++++r++ s s++ + + +g + +p+++++s+s ++  +++++      +  +s s++++e++++ss +l +r+++
  KKY17772.1 175 DSETSDD----------EnadEQQSRKRKSVSDDFDDEDSGNEERPRQRRRSNSGSSIASPSRPrqmnsvRVLESPSPGNPEPEQPSSVQLRKRFLK 261
                 1111111..........11124444444455666666666666666666666666666666666333443444444455555555555555555544 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0022
         SPX  68 tsaaadesgnsaadasssepkdeaeslprrsplsrssrssssygglvssppsansssssddssesnpadssssssssesesssssspsllr 158
                 ++a+++e++ + + +++++++ + e+++r+++  r    ++  ++   +++++++s+s++ds+ s+p+  +s+sss + e++  s++ +l 
  KKY17772.1 585 SEAKRKEKEEKRKRKDEEREQRRKEREERKETERRARALDRDSDEEDETESEPSDSDSDSDSDASSPP--TSPSSSLHGENAVGSQRRRLG 673
                 33333333333333333333333335555555555555555555555555555555555555555522..333344444443333333333 PP

>> CPSF100_C  Cleavage and polyadenylation factor 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.7     0.052   1.2e+02      46      80 ..     177     209 ..     140     248 .. 0.47
   2 ?   -2.6   0.0       2.5   5.5e+03      49      78 ..     439     453 ..     403     481 .. 0.45
   3 ?    7.9   4.2    0.0014       3.1      36     104 ..     588     663 ..     547     670 .. 0.39

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.052
   CPSF100_C  46 eeeeeeeeeeeeaskkqkl.....aeksekeaseeeseek 80 
                 e++++e+++e++++k++       +       +++ +ee+
  KKY17772.1 177 ETSDDENADEQQSRKRKSVsddfdD-------EDSGNEER 209
                 2222222222222233322322221.......11111111 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.5
   CPSF100_C  49 eeeeeeeeeaskkqklaeksekeaseeese 78 
                 +++++               +++ ++++++
  KKY17772.1 439 SSQRS---------------TASLADDQRN 453
                 11111...............1112222222 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0014
   CPSF100_C  36 eaeeeekeeeeeeeeeeeeeeeaskkqkl...........aeksekeaseeeseekkeslptldvlpankasvrsaaqpl 104
                 ++ +e++e++++++ee+e+ +++++   +           +++s++e+++e++ ++++s +  d+ ++ +++  s + + 
  KKY17772.1 588 KR-KEKEEKRKRKDEEREQRRKERE---ErketerraralDRDSDEEDETESEPSDSDSDSDSDASSPPTSPSSSLHGEN 663
                 11.1111111111111111111111...1222345555553333333333333333333333343333333333455555 PP

>> Lin-8  Ras-mediated vulval-induction antagonist
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   1.0     0.022        49     165     220 ..     163     222 ..     132     301 .. 0.50
   2 ?    7.9   5.5   0.00091         2     174     253 ..     580     656 ..     560     682 .. 0.53

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.022
       Lin-8 165 eveeeaeeqgsmdlketeaeevkeeqmeqsfe......eeeeakleeptvniveeeaaarav 220
                 +++e++   +++d++++ +e+ +e+q  + ++       e++ ++e+p +   ++    ++ 
  KKY17772.1 163 DMPEVDDAGSDIDSETSDDENADEQQSRKRKSvsddfdDEDSGNEERPRQRRRSNSG--SSI 222
                 334444444444433333333333333333223333222222222222221111111..111 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00091
       Lin-8 174 gsmdlketeaeevkeeqmeqsfeeeeeakleeptvniveeeaaaravdqsfgsaeqqlessssrtssassssssaapsst 253
                 +++ ++e + +e +e+ +  ++ee+e+ ++e++  +  e+ a a + d++ +++++ ++s s +  +++s+ ss++ s++
  KKY17772.1 580 EEAGISEAKRKEKEEKRKR-KDEEREQRRKEREERKETERRARALDRDSDEEDETESEPSDSDS--DSDSDASSPPTSPS 656
                 4444444444444433333.33335555555555555555555555555555554444333333..33333333333322 PP

>> TFIIF_alpha  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   6.8     0.011        25     351     431 ..     166     256 ..     143     285 .. 0.73
   2 ?    7.3  19.3    0.0007       1.6     305     373 ..     585     651 ..     571     675 .. 0.61

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.011
                  ..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX.............XXXXXX...XX CS
  TFIIF_alpha 351 dkkdSddeedsddsDideedsvslvkakKkkekkkeekvdsnessagnsrparpspeqkdskskrkaa...........seeskspvsvpaK 431
                  + +d  ++ ds+ sD++++d +   k+k   +  ++e  ++ e  ++  r++++s  +++ +  r+++           + e ++p+sv  +
   KKY17772.1 166 EVDDAGSDIDSETSDDENADEQQSRKRKSVSDDFDDEDSGNEERPRQRRRSNSGSSIASP-SRPRQMNsvrvlespspgNPEPEQPSSVQLR 256
                  346777789999999999888887777777778888999999988888999999988887.6677777777777777776677777776544 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0007
                  XXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXX CS
  TFIIF_alpha 305 eEeeekke.ieqdedeeekeeekkeeegklskkkkkakklkkkkkekdkkdSddeedsddsDideedsvs 373
                   E + k++ ++++ ++ee+e+    +e ++ k+  +  + +++ +++ +++ ++e ++ dsD+d+++s++
   KKY17772.1 585 SEAKRKEKeEKRKRKDEEREQRR--KEREERKETERRARALDRDSDE-EDETESEPSDSDSDSDSDASSP 651
                  33333333033334444444444..4444666666666667777666.5666667777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1800  (0.100396); expected 358.6 (0.02)
Passed bias filter:                      804  (0.0448435); expected 358.6 (0.02)
Passed Vit filter:                       215  (0.0119917); expected 17.9 (0.001)
Passed Fwd filter:                        68  (0.00379274); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.21u 0.42s 00:00:01.63 Elapsed: 00:00:00.58
# Mc/sec: 3735.12
//
Query:       KKY17773.1  [L=360]
Description: hypothetical protein UCRPC4_g05406 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.53
# Mc/sec: 2035.66
//
Query:       KKY17774.1  [L=330]
Description: putative carnitine acyl carnitine carrier [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-58  192.7   3.8      4e-19   68.3   0.0    3.1  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.3   4.6e-23   8.3e-19       4      93 ..      31     119 ..      28     123 .. 0.90
   2 !   68.3   0.0   2.2e-23     4e-19       4      94 ..     135     229 ..     132     232 .. 0.90
   3 !   57.2   0.1   6.6e-20   1.2e-15       3      94 ..     241     326 ..     239     328 .. 0.94

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 4.6e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHG...GGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrg...lyrGllpnllrvapasalkfvlyetlkrll 93 
                 s +++l+aG+++g++a++v +P+d+vK+rlqt++k + +    +++dv++k++  eGl +   ly G+++ l++v+p  a+ f+ y++ k+l+
  KKY17774.1  31 SGVRSLAAGAVGGVCAVIVGHPFDLVKVRLQTAEKGAYS----GAMDVVRKTIAREGLQAlqgLYAGVSAPLVGVTPMFAVSFWGYDVGKTLV 119
                 56899*****************************99776....39************954444*************************99986 PP

  == domain 2  score: 68.3 bits;  conditional E-value: 2.2e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS....HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa....ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 s+++   aG ++++  tl+t+P+++vK+ lq+q++++ + + ++     ldv++++yke G+r+ +rG  ++l r  p sa++f++ye++kr+l 
  KKY17774.1 135 SIAQISSAGFFSAIPMTLITAPFERVKVLLQIQGQKQLAPGEKPkysgGLDVVRQLYKEGGVRSVFRGSAMTLARDGPGSAAYFAAYEYTKRWLS 229
                 56667789**************************99777666666777********************************************996 PP

  == domain 3  score: 57.2 bits;  conditional E-value: 6.6e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ls+ + ++aGg+ag++ ++ ++P+d+vK rlq+++++ +      i  +++ +yk  G+++++ G++p+l r +pa+a++f+  e  ++ ++
  KKY17774.1 241 LSLPAVIAAGGAAGIAMWIPVFPVDTVKSRLQSAEGRPT------IGGTVSGLYKAGGIKSFFPGFGPALARAVPANAATFLGVELAHKAMN 326
                 67778899*****************************87......899*************************************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.35s 00:00:01.01 Elapsed: 00:00:00.58
# Mc/sec: 1702.10
//
Query:       KKY17775.1  [L=273]
Description: putative general amidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-13   49.6   0.0    1.9e-12   46.9   0.0    1.9  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   1.1e-16   1.9e-12     211     450 ..      10     253 ..       1     254 [. 0.77

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 1.1e-16
                 -TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CC.GGGHHH.HHHHHHHHHHHHHTTT-SSSS CS
     Amidase 211 dpkdstssvipeesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelps.leeals.lyylilvaeassnlarylgvr 307
                 ++ d+  ++i  + +d  +el++  ++l++++v +dgv+ ++p+++ra+    +   + Gh+   ++  s + +a+  l++  ++a++++         
  KKY17775.1  10 WKVDPGLLPI--PWRDGLAELQEPTRKLKVAFVIDDGVVLPQPPITRAISYIRDLFDRFGHQTSTWSHAStHRSAYYdLWLPSVLADGGKR-------- 98 
                 4444445554..4677788889999*****************************************9554045555568888888888844........ PP

                 S---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCC..BSEEEEESSSSS--BCCCCCHHH..CSHHHH CS
     Amidase 308 yerlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafee..lDvllsPtaptpaprlgekdkti..dsytvl 402
                           ++l ++   ++l e + +  +  +++ +++        a+k+   ++ ++ k +e+  +D++++P++p    + +++ +      y+++
  KKY17775.1  99 ---------CADLCAQGGGQPLIEGMLVGQPSDEMNVAQR-----QAHAEKIY-DYQLQYLKQWEDsdIDAIIMPVMPWISYKPKQWVQSNqyVGYSSV 182
                 .........5677777777777777776666666666655.....23333333.68888888888888**********888888888766667899*** PP

                 HGCCTTT...HHHHHTT--EEEEECCCCT........................TECEEEEEEESTT-HHHH CS
     Amidase 403 ynlldftavvvpvnlaglpalsvpagksed.......................glPvGvqvigkafqeetl 450
                 +nl d+ a ++p   + +     p + +                         g+Pv vq+ig +f eet+
  KKY17775.1 183 WNLVDYAALAAPSGCVVEREKDDPTKVKHWaehekrnpsdeynwnqfdldlveGMPVPVQIIGGRFGEETC 253
                 *******99999998877666644444322346779*********************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 1740.27
//
Query:       KKY17776.1  [L=433]
Description: putative chorismate synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.6e-138  460.2   0.0     3e-138  460.0   0.0    1.0  1  Chorismate_synt  Chorismate synthase


Domain annotation for each model (and alignments):
>> Chorismate_synt  Chorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  460.0   0.0  1.7e-142    3e-138       1     327 []       8     381 ..       8     381 .. 0.93

  Alignments for each domain:
  == domain 1  score: 460.0 bits;  conditional E-value: 1.7e-142
                      SEEEEE-SCCSSEEEEEEE---BT-B--HHHHHHHHHHHTCTSSSSSSHHHCS-EEEEESSEETTEE-SS-EEEEEE-TTS-..SS..SSSTSB CS
  Chorismate_synt   1 lrvttfGeShgkalgavidgvpagleldeediqkeLdrRrpgqsklttqrkEkDeveilsGvfegktlGtpiallieNkdqrskdy..eeikev 92 
                      +rvtt+GeSh++++g+++dg+p+g++l e+diq +L+rRrpgqs+ltt+r+EkD+vei sG++ g+tlGtpi +l++N+dqr+kdy  ++++  
       KKY17776.1   8 FRVTTYGESHCRSVGCIVDGCPPGMPLVESDIQVQLTRRRPGQSALTTPRNEKDRVEIQSGTEFGVTLGTPIGMLVRNEDQRPKDYgnSTMDLF 101
                      89************************************************************77**********************54456679 PP

                      E-TTSTCHHHHHHC-S.STHCCCCCTHHCHHHHHHHHHHHHHHHHT.TTEEEEEEEEEETTE...........................CHHHH CS
  Chorismate_synt  93 pRpgHADltyalkYgirdlrgggrsSaReTaarvaaGavakklLke.lgieivayvssigei...........................ekeae 158
                      pRp+HAD+ty +kYg+++++gggrsSaReT++rvaaGa+a+k+Lk  +g+eiva+vss+g+                            e+  +
       KKY17776.1 102 PRPSHADFTYLEKYGVKASSGGGRSSARETIGRVAAGAIAEKYLKIaHGVEIVAFVSSVGSEhlfpptpehpspstnpeflklvssitrEEVDK 195
                      *********************************************868************5555666666667777777777888877533344 PP

                      H.TT-BS-CCCHHHHHHHHHHHHHTT--B-EEEEEEEES--TT-SBTTTB-HHHHHHHHHHTSTTEEEEEETTGGGGGGSBHHHHS--EE.... CS
  Chorismate_synt 159 n.pvrcpdeeaaeemeeaieeakkegdslGgvvevvvkgvpaGlGepvfdkldakLakalmsipAvkgveiGsGfeaaelkGseanDeiv.... 247
                      + pvrcp+++a+++m+++ie++++++ds+Gg+v++v++++p+GlGep+fdkl+a+La+a++sipA+kg+eiGsGf ++e++Gs +nD++v    
       KKY17776.1 196 HiPVRCPEAAASDRMTSVIEKFRDAKDSIGGTVTCVIRNCPVGLGEPCFDKLEASLAHAMLSIPATKGFEIGSGFGGCEVPGSIHNDPFVladp 289
                      45****************************************************************************************9999 PP

                      .............EESS-TTTTEETTEEBSS-EEEEEEE--SS--SSEEEEEBTTS-E-EEEE--S-S-S-THHHHHHHHHHHHHHHHHHHHH CS
  Chorismate_synt 248 .............lrktnnaGGieGGisnGepivvrvavKpipsiakeqktvdletkeevelevkgrhDpcvvpravvvveamvalvladall 327
                                   ++++nn+GGi+GGisnG+p+++rva+Kp ++i ++qkt ++  +e   le+kgrhDpcvvprav++veam+alv++dal+
       KKY17776.1 290 setpsapgtkqrlTTSSNNSGGIQGGISNGSPVYFRVAFKPPATIGQAQKTYSYGFEE-GVLEAKGRHDPCVVPRAVPIVEAMAALVVIDALM 381
                      999988887766544***************************************9999.*******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 2636.52
//
Query:       KKY17777.1  [L=446]
Description: putative methionine type [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-41  141.2   0.1    4.5e-41  140.8   0.1    1.2  1  Peptidase_M24   Metallopeptidase family M24
    5.2e-05   22.1   0.2    8.9e-05   21.3   0.2    1.3  1  Pectinesterase  Pectinesterase
  ------ inclusion threshold ------
      0.012   15.1   1.3      0.018   14.5   1.3    1.2  1  APC_basic       APC basic domain
      0.076   12.9   0.1       0.13   12.1   0.1    1.3  1  DUF3323         Protein of unknown function N-terminus (DUF33
        0.5   10.3   5.0       0.97    9.4   5.0    1.4  1  CENP-U          CENP-A nucleosome associated complex (NAC) su


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.8   0.1   1.3e-44   4.5e-41       2     208 ..     130     433 ..     129     434 .. 0.88

  Alignments for each domain:
  == domain 1  score: 140.8 bits;  conditional E-value: 1.3e-44
                    HHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTT..........TCEESSSSEEEEGGGGGSTTTBC...SSSB--TTEEEEEEEEEE CS
  Peptidase_M24   2 lirkaariasaaleavleaikpgvterelaaeieattlkrhg..........arglafppivasgenaavlhytp...ndrvlkegdlvlidagae 84 
                    ++r+ a+i++++++ + + ikpg t  e+a+ ie+ +++ +g          ++g++fp  +++++n++++hytp   n+ vl e d++++d+g++
     KKY17777.1 130 EYREGAEIHRQVRQWAQKSIKPGQTLTEIAEGIEDSVRALTGhpgleegdaiKGGMGFP--TGLSINHCAAHYTPnagNKWVLGEQDVMKVDFGVH 223
                    68********************************99787777888999999999*****..**************5544555************** PP

                    ETTEEEEEEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTB........CCGBSSCSEEEESS.SSSEE..EEEES CS
  Peptidase_M24  85 ydgyasDitrTvlvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesagl........akffphglGHgvGl.evhde..gpsvs 169
                    ++g + D+++Tv++   +p++++l++a+++a+++++k++  +v++s+++aa++e++es+++        +k ++++ GH + + ++h++  +p+v+
     KKY17777.1 224 VNGRIVDSAFTVAF---DPKYDNLLAAAKDATNTGVKEAGIDVRMSDVGAAIQETMESYEVeidgttypVKSIRNLNGHTINQySIHGGksVPIVK 316
                    **************...9****************************************965667778999999*********99***884455555 PP

                    SSTTCSSB--TTBEEEEEE......EEEEETTT............................................................... CS
  Peptidase_M24 170 resndgrkleeGmvftiEp......giyfapge............................................................... 196
                      ++d++k+eeG++++iE+      g++  +                                                                 
     KKY17777.1 317 --GGDQTKMEEGETYAIETfgstgkGYVRDD-Mevshyakradaanvalrvssarsllnvinknfgtlpfcrryldrlgqekyllglntlvsagiv 409
                    ..779**************988887666333.1356666667778888888889999999999999999999999999999999999999999999 PP

                    ............EEEEEBEEEEEE CS
  Peptidase_M24 197 ............ggvriedtvlvt 208
                                +++++e+t+l++
     KKY17777.1 410 eaypplcdikgsYTAQFEHTLLLR 433
                    99999999999679*****99976 PP

>> Pectinesterase  Pectinesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.2   2.5e-08   8.9e-05      47     120 ..     298     372 ..     262     378 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2.5e-08
                     TTS-SEEEEES-TTTEEEEE.---TTTT--SGGG-SEEE-STT-EEES-EEEE---GGG----SEEE--TTEEEE CS
  Pectinesterase  47 kkktnvvlvGdGkektvitg.sknvvdgkttfktatvavvgegfiarditfentaGpekhqavalrvdsDlsvfy 120
                      ++ n   +  Gk+  ++ g ++  +++ +t+   t+  +g+g++  d+ ++  a  +    valrv+s +s++ 
      KKY17777.1 298 GHTINQYSIHGGKSVPIVKGgDQTKMEEGETYAIETFGSTGKGYVRDDMEVSHYAKRADAANVALRVSSARSLLN 372
                     55566666778999999999677777778****************************************999875 PP

>> APC_basic  APC basic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   1.3   4.9e-06     0.018      80     157 ..      15      92 ..       4     123 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.9e-06
   APC_basic  80 sgsSrsStpsrqaqkkl....tsptqsakrlsksgarngssspnksspekkkkspaaastkkspskktqkSPvRipfmqkpa 157
                  g+ ++St+    +k       +p  s  + + ++ +     +++++++kkk+ p   ++kk++  ktq SP R p  q  +
  KKY17777.1  15 NGAAQKSTAEPDGTKTAekgdVNPEDSGDEEEEEAVE--GGEAPTATKKKKKNKPK--KKKKKGGAKTQSSPPRVPVSQLFS 92 
                 5677788875544444400004444444444444444..34455566666666666..6778989***********998655 PP

>> DUF3323  Protein of unknown function N-terminus (DUF3323)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   3.6e-05      0.13      58     123 ..     103     169 ..      88     172 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.6e-05
     DUF3323  58 ealfgeplltrkeeraaeaeawaavfaaleaeaaarpelreWld.klrgygllrrlykkdeeaarel 123
                 e l ++  +t +ee++a ++  +++++++++ a+ + ++r+W++ +++  ++l++++++ e+++r+l
  KKY17777.1 103 EYLNENAYRTTSEEKRALDRMNNDFLKEYREGAEIHRQVRQWAQkSIKPGQTLTEIAEGIEDSVRAL 169
                 55656677999*********************************9999************9999765 PP

>> CENP-U  CENP-A nucleosome associated complex (NAC) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.0   0.00027      0.97      32      91 ..      21      81 ..      12      91 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00027
      CENP-U 32 lseksaesetpkk.tvqksasssveketlaeatksqsktqkkkklskgkrkksrseakdsd 91
                   +++  +t++k +v+  +s ++e+e+++e  +++  t+kkkk  ++k+kk    +++s+
  KKY17777.1 21 STAEPDGTKTAEKgDVNPEDSGDEEEEEAVEGGEAPTATKKKKKNKPKKKKKKGGAKTQSS 81
                4456677777766256667777788888899999999999999877766555544444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       973  (0.0542696); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 2743.16
//
Query:       KKY17778.1  [L=362]
Description: putative outer mitochondrial membrane protein porin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-68  229.6   3.7    7.9e-55  186.2   2.7    2.0  2  Porin_3   Eukaryotic porin


Domain annotation for each model (and alignments):
>> Porin_3  Eukaryotic porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   3.1e-15   5.5e-11       2      68 ..      10      78 ..       9      89 .. 0.91
   2 !  186.2   2.7   4.4e-59   7.9e-55      60     270 .]     144     355 ..     140     355 .. 0.97

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 3.1e-15
                ---CCCCCHHHHHHHHCC.HTTTECEEEEEEEECCECCEEEEEEEETTTS-ECEEEEEEEEE..TCCCEE CS
     Porin_3  2 Pgtyedlgkeakdllpkd.YhfeglkldvtkktslgvaFqvshsfslgsgkvsysfeakykd..kgltlt 68
                P++++d+ k a+dll+kd Yh + + l+v++k+++gv+F+v++ +  ++g++s+s+e+ky+d  +g++l 
  KKY17778.1 10 PVAFSDIAKPANDLLNKDfYHSTAATLEVKSKAPNGVTFNVKGRQP-HDGSISGSIEGKYVDkpTGTSLR 78
                899****************************************988.799***********966665554 PP

  == domain 2  score: 186.2 bits;  conditional E-value: 4.4e-59
                 EEETCCCEEEEEECCCSCCEEEEEECCSSTTCEEEEEEEE-TTT--EEEEEEEEEEETTEEEEEEEECTCEEEEEEEEEEECTSTEEEEEEEEEECTTT CS
     Porin_3  60 ykdkgltltlkgntdndlsltarvneqlaeglklklsaqltpekgkksakleldykgddftaslklgnsktpvvvasllqsvtpglalGaeavydtasg 158
                 +   gltlt+ ++t+n+l +++++++++a+glk ++s+++ p ++   +k+++ +k+++f+a++ l+ +k+p+ +++++++++ g+++Gae++yd++++
  KKY17778.1 144 FP--GLTLTQSWSTSNSLDTKVELEDNIAKGLKAEISTNFLPATKAYGGKVNVFFKQPNFHARAFLDPFKGPTATIDAVVGHE-GFVVGAETGYDVQKA 239
                 55..99*****************************************************************************.*************** PP

                 CCEEEEEEEEEEECSEEEEEEEEETTTEEEEEEEEECCTTEEEEEEEEEETTEE.EEEEEEEEEEEECTCEEEEEEEECTTEEEEEEEEEECTTEEEEE CS
     Porin_3 159 kltkyaaalsyaardwiaslqllnnggaltasyyqkvsekvevgaeltlnassq.estttlGakydldksttvkakidsngkvgllleqkLrpgvtltl 256
                 ++tky++a +y+ +++ a++++ nn +++tasy++kv+++v +ga++t++++++ +   +++ ky++d+ ++ kaki++ g ++l+++ kL  gvtl+l
  KKY17778.1 240 AITKYSVAAGYSLPSYAAAITATNNLSVFTASYFHKVNPQVLAGAKATWDSKAGsNVGLEVASKYQIDPTSFAKAKINDRGLASLAYNVKLSTGVTLGL 338
                 ***************************************************999455678*************************************** PP

                 EEEEECCCT...EEEEE CS
     Porin_3 257 saelDhkkn...ahkfG 270
                 +a++D++++   ahk+G
  KKY17778.1 339 GASFDTQNLnqaAHKVG 355
                 ******999999***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 2212.86
//
Query:       KKY17779.1  [L=579]
Description: putative asparagine synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-92  310.5   0.1    4.5e-54  184.5   0.0    2.1  2  Asn_synthase  Asparagine synthase
    2.5e-35  121.1   0.0    4.1e-35  120.4   0.0    1.4  1  GATase_7      Glutamine amidotransferase domain
    2.2e-26   92.7   0.0    3.8e-26   91.9   0.0    1.3  1  GATase_6      Glutamine amidotransferase domain
    6.1e-06   25.8   0.0    1.2e-05   24.8   0.0    1.4  1  DUF3700       Aluminium induced protein
     0.0091   15.1   0.0      0.017   14.3   0.0    1.4  1  NAD_synthase  NAD synthase


Domain annotation for each model (and alignments):
>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.5   0.0   1.3e-57   4.5e-54       2     144 ..     213     394 ..     212     396 .. 0.98
   2 !  126.6   0.1   4.7e-40   1.7e-36     202     346 ..     392     558 ..     390     570 .. 0.94

  Alignments for each domain:
  == domain 1  score: 184.5 bits;  conditional E-value: 1.3e-57
  Asn_synthase   2 lrelLedaVkrrlradvpvGalLSGGlDSSliaalaarqsk.......................................splktFsigfeekgsde 59 
                   +r++Le++V +rl+a+vp+G+lLSGGlDSSl+a++a+r++                                        ++l++Fsig+  +gs++
    KKY17779.1 213 IRRTLEKSVLKRLMAEVPYGVLLSGGLDSSLVASIAQRETLrqkavlngtassdrghkasnsqglvgiddedelstvtflPQLHSFSIGL--PGSPD 307
                   89************************************9999************************************************..***** PP

  Asn_synthase  60 akyakevaehlgtehtelvlteeelldalpdviyhlee..pfadrsaiplyllsrlakrkgvkvvLsGeGaDElfgGYpyfykaals 144
                    k+a eva+ lgt+h+ + +t +e+ldal dviyhle+  ++++r+++p+yllsr++k++gvk+vLsGeG+DE+fgGY+yf+ a+ +
    KKY17779.1 308 EKAAIEVAKFLGTKHHAFTFTLDEGLDALSDVIYHLETydVTTIRASTPMYLLSRKIKAMGVKMVLSGEGSDEIFGGYLYFHAAPNK 394
                   ***********************************************************************************9955 PP

  == domain 2  score: 126.6 bits;  conditional E-value: 4.7e-40
  Asn_synthase 202 egedelhrelyldlktllpgdllrkDrasmahglEaRvPflDhrlvevalrlppelklrg..gieKyiLRealeg........ylPeeileRpKegf 288
                   ++++e+h+e+++++k+l+  d+lr+++++ a+g+EaRvPflD++++e++++++p++k+    +ieKyiLR+a++         ylPe+il+R+Ke+f
    KKY17779.1 392 PNKEEFHKETVRRVKNLHLADCLRANKSTSAWGVEARVPFLDKQFLELCMNIDPAEKMITgdRIEKYILRKAFDTsdepdvkpYLPENILWRQKEQF 488
                   6899******************************************************99889**********9888999999************** PP

  Asn_synthase 289 sapvgewklkgelrelaeellsds.............rlakeglldreaveelleeheagkrnesrqlwsl 346
                   s++vg+ +++ +l++ ae ++ d+             + +ke++++r++++++++ ++a +  ++++ ws 
    KKY17779.1 489 SDGVGYGWID-ALKDQAELQVTDEmmknpkpewgddiPDSKEAYWYRTMFDQHFPPYCASTVMRWTPTWSK 558
                   *********9.************************************************666666666654 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4   0.0   1.1e-38   4.1e-35       1     122 [.      47     167 ..      47     168 .. 0.96

  Alignments for each domain:
  == domain 1  score: 120.4 bits;  conditional E-value: 1.1e-38
    GATase_7   1 hrrlsiidseagaQPmvssedgrlvivfnGeiyNykelreeLeakghrfrtksDtevllalleaewgeealerlnGmfAfaiwdeeekrlllaRDrlGi 99 
                 h+rlsi+ +++gaQP++ +ed+++++ +nGeiyN++ lr++L++  ++f+t+sD+ev++ l+ + +  +a + l+Gmf+++++d++++r ++aRD++Gi
  KKY17779.1  47 HERLSIVGVDSGAQPLT-NEDESIALGVNGEIYNHRILRKQLKTP-YNFKTHSDCEVIIPLYLE-HDVDAPKYLDGMFSWVLYDKKQDRTIAARDPIGI 142
                 89***************.69**********************886.9***************97.999******************************* PP

    GATase_7 100 kPLyygedk..gdallfaSelkall 122
                 + +y+g+++   +a++faSelk+l+
  KKY17779.1 143 TTFYLGRSSqtPGAVYFASELKCLH 167
                 *******997745*********996 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.0   1.1e-29   3.8e-26       2     134 .]      33     162 ..      26     162 .. 0.95

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 1.1e-29
    GATase_6   2 dasglaslvedevalaHvRlaivglaeeegaqPfpsedgrlllvhNGeiynykelreelpalkglafrsrsDtevllalleelGeevlerlrGmfafai 100
                 d sg   ++ +++++aH Rl+ivg +  +gaqP+++ed+ ++l +NGeiyn++ lr++l+    ++f+++sD+ev++ l+ e++ ++ + l+Gmf+ ++
  KKY17779.1  33 DWSGN--FIAGNTIIAHERLSIVGVD--SGAQPLTNEDESIALGVNGEIYNHRILRKQLKT--PYNFKTHSDCEVIIPLYLEHDVDAPKYLDGMFSWVL 125
                 66666..788899************8..9*******************************9..89999******************************* PP

    GATase_6 101 wdkrentlilardrlgvkplyyavd...esglafase 134
                 +dk++++ i ard +g+ + y + +    ++++fase
  KKY17779.1 126 YDKKQDRTIAARDPIGITTFYLGRSsqtPGAVYFASE 162
                 **********************99988889999**98 PP

>> DUF3700  Aluminium induced protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   3.5e-09   1.2e-05     127     205 ..     115     195 ..     110     204 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 3.5e-09
     DUF3700 127 kdleGkfafvlydskaktvfvaldadgsvplyWGiaad..gsvvisddlelvkksCgksfapfPkGclftse.gGLksfehP 205
                 k l+G f++vlyd+k++ +++a+d  g   +y G +++  g v ++ +l+ ++  C   + +fP G ++ s+   L+ + +P
  KKY17779.1 115 KYLDGMFSWVLYDKKQDRTIAARDPIGITTFYLGRSSQtpGAVYFASELKCLHPVCDN-IISFPPGHIYDSKtDKLTRYFQP 195
                 5699******************************87643399**************86.568*******9984567766666 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.7e-06     0.017       4      42 ..     212     252 ..     209     278 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.7e-06
                   HHHHHHHHHHHHCTTSEEEEE..E-SSHHHHHHHHHHHHHH CS
  NAD_synthase   4 elvdflkeyvkkagakgvvlG..lSGGvDSslvaalavkal 42 
                   ++   l++ v k+ + +v +G  lSGG+DSslva +a++  
    KKY17779.1 212 AIRRTLEKSVLKRLMAEVPYGvlLSGGLDSSLVASIAQRET 252
                   677788899999999999999668*************9754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3760.10
//
Query:       KKY17780.1  [L=149]
Description: putative sumo conjugating enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-39  133.7   0.0    5.9e-39  132.9   0.0    1.4  1  UQ_con    Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9   0.0   3.3e-43   5.9e-39       1     139 [.       7     142 ..       7     143 .. 0.96

  Alignments for each domain:
  == domain 1  score: 132.9 bits;  conditional E-value: 3.3e-43
                 HHHHHHHHHHHSTTTTEEEEEEET....TEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT.--TT CS
      UQ_con   1 rlqkelkelakkkpsgisaklvdd....enlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeek.Wspa 94 
                 rlq+e k++++++p g+ ak++ +     +l++w++ i g+e+t++egg+Fkl+++f        P  kfv ++fHPnv++sG+vcl+iL+ee+ W+pa
  KKY17780.1   7 RLQEERKQWRRDHPFGFFAKPQRNaqgvLDLKRWECGIPGKEKTLWEGGLFKLDVTF--------PDGKFVPPLFHPNVYPSGTVCLSILNEEEgWKPA 97 
                 89*********************7678899***************************........678***********************8889**** PP

                 SHHHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
      UQ_con  95 ltlesvllsiqsLlaepnpesplnkeaakllkkdreeykkkvkey 139
                 +t++++ll iq Ll++pnpesp+++ea++l+kkdr++y+k+vk++
  KKY17780.1  98 ITIKQILLGIQDLLNDPNPESPAQAEAYNLFKKDRQAYEKRVKQV 142
                 ******************************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1038.69
//
Query:       KKY17781.1  [L=343]
Description: hypothetical protein UCRPC4_g05414 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.041   14.1   0.3       0.11   12.7   0.3    1.7  1  GTSE1_N   G-2 and S-phase expressed 1
       0.26   11.4   2.4       0.41   10.7   2.4    1.3  1  UPF0242   Uncharacterised protein family (UPF0242) N-terminus


Domain annotation for each model (and alignments):
>> GTSE1_N  G-2 and S-phase expressed 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   1.2e-05      0.11      37     103 ..     127     195 ..     119     217 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.2e-05
     GTSE1_N  37 kcvaasvelaeeee..keesleasesklswsPltgekfvevfkEAhllalqlessskseeakaasseed 103
                 ++v+ +v ++ +e+  +++s ++ +++  wsP    + +ev +EA++ a  l+++   +++k ++ +++
  KKY17781.1 127 RHVSFDVPMSPKEQdvAQQSRQGFSENGFWSPEHLKRSEEVLREAQERARLLQEEVLGHDKKRNRRRRA 195
                 66666665544444114555666778889***********************94433333333322222 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.4   4.5e-05      0.41      73     134 ..     138     211 ..     103     223 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.5e-05
     UPF0242  73 keaklteld............eglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfe 134
                 ke+ + +++            e+lk  ee l+e+qe+ + L+ee+   +++ +r+++ +++L+++  a + + e
  KKY17781.1 138 KEQDVAQQSrqgfsengfwspEHLKRSEEVLREAQERARLLQEEVLGHDKKRNRRRRAKESLKVRNTADSLETE 211
                 4444444445566666788889*****************************************99887665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.52
# Mc/sec: 1974.07
//
Query:       KKY17782.1  [L=375]
Description: putative c2h2 type zinc finger domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00019   21.7   0.6       0.85   10.2   0.2    2.5  2  zf-C2H2    Zinc finger, C2H2 type
  ------ inclusion threshold ------
      0.018   15.8   0.7        4.9    8.3   0.0    2.7  2  zf-C2H2_4  C2H2-type zinc finger
      0.079   13.4   0.0        9.3    6.9   0.0    2.6  2  zf-H2C2_2  Zinc-finger double domain
       0.34   10.8   1.0       0.92    9.5   0.5    1.9  2  zf-C2HC_2  zinc-finger of a C2HC-type


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.2   0.00019      0.85       5      23 .]     187     205 ..     186     205 .. 0.88
   2 !    9.5   0.0   0.00031       1.4       5      21 ..     224     240 ..     211     241 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00019
                 TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   5 dCgksFkrksnLkrHirtH 23 
                  Cgk F r+++ krH   H
  KKY17782.1 187 LCGKAFARQHDRKRHEGLH 205
                 6**************7665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00031
                 TTTEEESSHHHHHHHHH CS
     zf-C2H2   5 dCgksFkrksnLkrHir 21 
                 +Cg++F r + L rH r
  KKY17782.1 224 GCGRRFARADALGRHFR 240
                 7**************87 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2     0.011        51       4      23 ..     186     205 ..     186     206 .. 0.86
   2 ?    8.3   0.0    0.0011       4.9       6      22 ..     225     241 ..     223     242 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.011
   zf-C2H2_4   4 piCgksFsskkaLlrHlkth 23 
                 p+Cgk F ++++ +rH   h
  KKY17782.1 186 PLCGKAFARQHDRKRHEGLH 205
                 79*********988898766 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0011
   zf-C2H2_4   6 CgksFsskkaLlrHlkt 22 
                 Cg++F + +aL rH+++
  KKY17782.1 225 CGRRFARADALGRHFRS 241
                 **************986 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.02        89      16      25 ..     184     193 ..     171     194 .. 0.82
   2 ?    6.9   0.0    0.0021       9.3       3      17 ..     199     213 ..     197     222 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.02
   zf-H2C2_2  16 eCplCdkaFk 25 
                 + plC+kaF+
  KKY17782.1 184 QVPLCGKAFA 193
                 569******8 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0021
   zf-H2C2_2   3 rrHirkHtgekpyeC 17 
                 +rH   H gek++ C
  KKY17782.1 199 KRHEGLHSGEKKFIC 213
                 7**********9977 PP

>> zf-C2HC_2  zinc-finger of a C2HC-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.79   3.5e+03       6      13 ..     186     193 ..     186     193 .. 0.85
   2 ?    9.5   0.5   0.00021      0.92       7      22 ..     224     240 ..     224     247 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.79
   zf-C2HC_2   6 pkCgRsFn 13 
                 p Cg  F+
  KKY17782.1 186 PLCGKAFA 193
                 78**9996 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00021
   zf-C2HC_2   7 kCgRsF.npdrlekHep 22 
                 +CgR+F  +d+l +H +
  KKY17782.1 224 GCGRRFaRADALGRHFR 240
                 5**************65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 2288.27
//
Query:       KKY17783.1  [L=211]
Description: putative l-lactate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-36  126.1   0.0    1.8e-36  125.9   0.0    1.1  1  FMN_dh    FMN-dependent dehydrogenase


Domain annotation for each model (and alignments):
>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.9   0.0     1e-40   1.8e-36       1     146 [.      47     211 .]      47     211 .] 0.90

  Alignments for each domain:
  == domain 1  score: 125.9 bits;  conditional E-value: 1e-40
                 HHCCS-HHHHHHHH--STTSHHHHHHHHGGGGEEE---SSSS-SS-B--EEETTEEESSSEEE--BSTGGGTSTTHHHHHHHHHHHHTS-EEEETT-SS CS
      FMN_dh   1 ArkrlpkkafayvaggagdevtlrenraaferirlrprvlrdvskvdlsttllGqklslPvliaPvglaklahpdgelalaraaakagipfvlstvast 99 
                 A+++l++  + y ++ ag+  t+ +nr+af r r+ pr l+d++++d++ttl+G+k+s+P+++a++g++k++hp+gel +a+ a ++++p++lst+ st
  KKY17783.1  47 AEETLSRGGWYYDSSNAGKSLTHLANRQAFYRHRIIPRQLVDTNERDTATTLFGHKVSAPIGFAAIGINKIYHPKGELPVAKVAGELNLPYCLSTAGST 145
                 7899*********************************************************************************************** PP

                 -HHHHHH......H.......HTT.......-EEEEEE-CSSHHHHHHHHHHHHHCTESEEEEESST CS
      FMN_dh 100 sleevaa......a.......aeg.......plwfqlyvpkdrelteellkraeaagykalvltvDt 146
                 s+e+vaa      a       + +       p+++qly+p+d+elt +ll ra ++ ++  +lt+Dt
  KKY17783.1 146 SIEDVAAsndigaAlpsavnpS-DrpdtdgpPRFYQLYMPHDDELTISLLTRAYKSSLTIYILTTDT 211
                 *****99655544133333331.03344557***********************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1486.60
//
Query:       KKY17784.1  [L=1003]
Description: putative serine threonine protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-46  158.4   0.0      2e-30  106.1   0.0    2.3  2  Pkinase         Protein kinase domain
    1.7e-21   76.7   0.0    1.4e-20   73.7   0.0    2.4  1  Pkinase_Tyr     Protein tyrosine kinase
    1.9e-05   24.7   0.0    5.2e-05   23.3   0.0    1.7  1  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.011   14.6   0.0      0.025   13.4   0.0    1.6  1  Pkinase_fungal  Fungal protein kinase
      0.011   15.1   0.0      0.062   12.6   0.0    1.9  1  Kinase-like     Kinase-like
      0.021   14.5   0.8      0.041   13.5   0.8    1.5  1  NepR            Anti-sigma factor NepR


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.1   8.4e-17   2.5e-13       1      90 [.      54     151 ..      54     171 .. 0.87
   2 !  106.1   0.0   6.7e-34     2e-30      95     264 .]     294     519 ..     272     519 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 8.4e-17
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH......HHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke......kkvlrEikilkklkhpnivrlyevfee..kdelylvleyveggeladlle 90 
                 ye l +lG+G+ GkV  +++ +tg+ +A+K++ + ++  +        +kv +E++ilkk +hpn+v l+ev+ +   +++y+vle+ve+ge++ + +
  KKY17784.1  54 YEILDELGRGEHGKVKLGRDLNTGQYIAMKIVPRYSKLRRLGrlgapeEKVKKEVAILKKARHPNVVSLLEVIDDptRHKVYIVLEFVENGEIKWRKR 151
                 78899***************************99888776667889999*************************977789***********9765544 PP

  == domain 2  score: 106.1 bits;  conditional E-value: 6.7e-34
                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS...................BCTTTSCGGGS-HHHH..... CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk...................ltsfvgtseYlAPEvl..... 169
                 l+ +ea++ +  +l gle+lH +giiHrD+Kp+N+L+  ++++Ki+DFG++   +   +                   l   vgt+ + APE+      
  KKY17784.1 294 LTLNEARSAFIDTLLGLEFLHFQGIIHRDIKPANLLVTADNHVKISDFGVSYLGRPIADeeyerikeedaaelddpreLARTVGTPAFYAPELCytdvn 392
                 677899********************************************9887776666789999****************************99999 PP

                 ........TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT...SHH...HHHTTS........................ CS
     Pkinase 170 ........keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg...etkeklpeasei........................ 233
                         ++ +++ + D+W+lGv+ly +++g+ pf  +     + k++++ + i+   +    ++++                               
  KKY17784.1 393 mfegaadgTGPKITGALDIWALGVTLYGIVYGRLPFLMDGAMGIFDKIAEK-QPIFPRWRlkpAVSNADS----Kpssythihkaldseyrsddalvye 486
                 998887755678899**********************88888877777776.333332223342222222....13344678999************** PP

                 ..-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 ..seeakdllkkllkkdpkkRltaeellqhpyl 264
                   ++++ dll++ll kdp kR+t+ee+++h+++
  KKY17784.1 487 evPDSLVDLLRRLLIKDPAKRMTIEEAKAHEWV 519
                 ********************************6 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.0   4.7e-24   1.4e-20       3     206 ..      56     428 ..      54     516 .. 0.82

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 4.7e-24
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.......HHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.......keelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkf 91 
                  + ++lG+G+ GkV  g+      ++ + +a+K++ + ++ ++       +e++ +e++i+kk +hpn+v+ll v+    +++++iv+e+v++G+++  
   KKY17784.1  56 ILDELGRGEHGKVKLGRDL----NTGQYIAMKIVPRYSKLRRlgrlgapEEKVKKEVAILKKARHPNVVSLLEVIDdpTRHKVYIVLEFVENGEIKWR 149
                  6789************999....777888888886554443323334448999**********************9888888*************987 PP

                  HHHT.............................................................................................. CS
  Pkinase_Tyr  92 Lrkk.............................................................................................. 95 
                   r +                                                                                              
   KKY17784.1 150 KRGTreiliverrrmervqrgipetpetqeedrkwvarmhrareiaerrarslglrsvpawslehggesdaeseenedensnlsressyiagelddgl 247
                  666699******************************************************************************************** PP

                  ..........................................CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTH. CS
  Pkinase_Tyr  96 ..........................................ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLa. 150
                                                              ++ltl++  s  ++   G+e+L+ + ++Hrd+   N L++ +++vkisDfG++ 
   KKY17784.1 248 legsmygayapisrargmsiaesmishlssevnwdqedeettYVPTLTLNEARSAFIDTLLGLEFLHFQGIIHRDIKPANLLVTADNHVKISDFGVSy 345
                  **************************************99998999*************************************************763 PP

                  ..EETTTSSEE.............EETTSSTSGGGGS-HHHHHHSE.............EEHHHHHHHHHHHHHHHHTTSSGTT CS
  Pkinase_Tyr 151 ..rdiekddey.............vkkeeaklpvkWmapEslkekk.............ftsksDvWsfGvllwEiftlgespy 206
                    r i ++++              ++  ++     ++apE   + +             +t + D+W+ Gv+l+ i+  g+ p+
   KKY17784.1 346 lgRPIADEEYErikeedaaelddpRELARTVGTPAFYAPELCYTDVnmfegaadgtgpkITGALDIWALGVTLYGIVY-GRLPF 428
                  3366655555543222111221111112233456799999998888899999999999999999**********9998.88884 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.7e-08   5.2e-05      30     204 ..      97     352 ..      73     352 .. 0.58

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.7e-08
                 TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTE........................EEEEEE----EE-SSHHHHHHHHHHHHHHHHHHC CS
         APH  30 paraaeeirrevallrlLakagv.pvPevlagdtddeeigl........................lfalieyvpgrsllrklsaaqlpellealgefla 103
                  + ++e++ +eva+l+  +  +v +  ev++      ++ +                        + + +e+v   ++++++++++++++++++++++ 
  KKY17784.1  97 LGAPEEKVKKEVAILKKARHPNVvSLLEVID--DPTRHKVYivlefvengeikwrkrgtreilivERRRMERVQRGIPETPETQEEDRKWVARMHRARE 193
                 4467888888888888866555567777776..222222223222222222222233333333333333333333333333334444444444444433 PP

                 CHHCH.-STTTB-.................................................................SHHCHTCCHHHHHHCHHHCCC CS
         APH 104 alhqvdpaalpla.................................................................dflaqdlellrqlesatarll 137
                        a+++ +                                                                 +++++ + +l  ++++  ++ 
  KKY17784.1 194 ------IAERRARslglrsvpawslehggesdaeseenedensnlsressyiagelddgllegsmygayapisrargmSIAESMISHLSSEVNW--DQE 284
                 ......3333333555556666666666666666666666666666666666666667777777777777766666666666666666777777..444 PP

                 GCCTCC....HHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHH CS
         APH 138 aselld....lleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyD 204
                 ++e+       l e++++++++l+ l      ++++H+D++p Nllv++d++    + Df+ + lg p++D
  KKY17784.1 285 DEETTYvptlTLNEARSAFIDTLLGLEF-LHFQGIIHRDIKPANLLVTADNHVK--ISDFGVSYLGRPIAD 352
                 4444443335455666667777776666.69*****************665555..99***9999999988 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   8.4e-06     0.025     307     345 ..     298     335 ..     293     389 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.4e-06
  Pkinase_fungal 307 ellealrDaIkghrsLflkagiLHrDiSenNilitdskk 345
                     e+ +a++D + g++ L+  +gi+HrDi   N+l+t +++
      KKY17784.1 298 EARSAFIDTLLGLEFLH-FQGIIHRDIKPANLLVTADNH 335
                     56689************.99**************94422 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.1e-05     0.062     160     251 ..     313     429 ..     306     442 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.1e-05
  Kinase-like 160 Lqakglvhgkftvdnllldekgglmlggfta..Lvr...agtkvvlseve................kgfaPpEllgsrgg.ytrknk...tkmthkld 232
                  L+++g++h ++++ nll   +  +++ +f+   L r   + ++ ++ e                   +f  pEl+      ++  +     k+t +ld
   KKY17784.1 313 LHFQGIIHRDIKPANLLVTADNHVKISDFGVsyLGRpiaDEEYERIKEEDaaelddprelartvgtPAFYAPELCYTDVNmFEGAADgtgPKITGALD 410
                  99*************************986511544332445555533336889999999999988889999999887776765543111589***** PP

  Kinase-like 233 aWqlGlviyriwclklPlt 251
                   W+lG++ y i    lP+ 
   KKY17784.1 411 IWALGVTLYGIVYGRLPFL 429
                  ***********99999985 PP

>> NepR  Anti-sigma factor NepR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.8   1.4e-05     0.041      13      31 ..     481     499 ..     481     500 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.4e-05
        NepR  13 ddvvdEpvPDrFldLLeqL 31 
                 d++v E+vPD+++dLL++L
  KKY17784.1 481 DALVYEEVPDSLVDLLRRL 499
                 78899************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1003 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.51
# Mc/sec: 5943.09
//
Query:       KKY17785.1  [L=1118]
Description: hypothetical protein UCRPC4_g05418 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00021   21.5   2.5        7.8    6.9   0.1    4.2  3  Kelch_6   Kelch motif
    0.00025   20.9   0.2         10    6.2   0.2    4.0  3  Kelch_5   Kelch motif
  ------ inclusion threshold ------
      0.014   14.9   0.3      0.081   12.4   0.0    2.2  2  Rax2      Cortical protein marker for cell polarity
      0.018   15.0   3.7         25    5.0   0.7    4.6  4  Kelch_4   Galactose oxidase, central domain


Domain annotation for each model (and alignments):
>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0031        14       6      24 ..     161     192 ..     158     211 .. 0.73
   2 !    6.9   0.1    0.0017       7.8       1      27 [.     313     343 ..     313     363 .. 0.78
   3 !    5.2   0.2     0.006        27       4      40 ..     381     432 ..     380     434 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0031
     Kelch_6   6 slvsvggkiYifGGytds.............s 24 
                 s+ +++  +Y+fGG + +              
  KKY17785.1 161 SADAADTDLYVFGGMCPDngtsedvstwtssA 192
                 7789999*******999876655554444444 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0017
     Kelch_6   1 praghsl.vsvgg.kiYifGGytds..spyl 27 
                 pr gh++  s++g +i ++GG++++  +p++
  KKY17785.1 313 PRSGHTAlLSPDGdHIIVLGGWVGDinTPAT 343
                 57888885566655********998765554 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.006
     Kelch_6   4 ghslvsvggki.YifGGytds..............spylnkvwvydpetksW 40 
                 gh ++   g i  ++GGy+ s              +++ n +++++  +k+W
  KKY17785.1 381 GHGAAMLPGGImLVMGGYSISssssrvkgrrsdstDTTNNNMYLFNTTSKTW 432
                 5667776677746779999999999999999999999**************9 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0     0.007        31      12      25 ..     164     186 ..     158     205 .. 0.62
   2 !    5.0   0.0    0.0057        25       4      25 ..     313     336 ..     312     343 .. 0.83
   3 !    6.2   0.2    0.0023        10       5      41 ..     379     429 ..     378     430 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.007
     Kelch_5  12 tvsekiYvyGGkv.........g 25 
                 ++++ +Yv+GG+          +
  KKY17785.1 164 AADTDLYVFGGMCpdngtsedvS 186
                 67899******985555444441 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0057
     Kelch_5   4 pRaghcavtv..sekiYvyGGkvg 25 
                 pR+gh a     ++ i+v GG+vg
  KKY17785.1 313 PRSGHTALLSpdGDHIIVLGGWVG 336
                 899****999545**********7 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0023
     Kelch_5   5 Raghcavtvs.ekiYvyGGkv............g.rdgsvsddvyvLdlps 41 
                 ++gh a++++ + ++v+GG++            + +++  ++++y ++++s
  KKY17785.1 379 IYGHGAAMLPgGIMLVMGGYSisssssrvkgrrSdSTDTTNNNMYLFNTTS 429
                 799******5499********999988888666467777789999988876 PP

>> Rax2  Cortical protein marker for cell polarity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.21   9.5e+02      16      70 ..     246     298 ..     236     311 .. 0.73
   2 ?   12.4   0.0   1.8e-05     0.081     135     198 ..     431     495 ..     398     505 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.21
        Rax2  16 ganelpgpvtsftladsdisqlwvagkssngssfllkydgskWssid..dinlgest 70 
                 g+++++++ ++f+l++ ++++  +++     +  l+ + +++Ws i+  +++ +++t
  KKY17785.1 246 GSSDSSEEAQNFVLIGGHTAEAFINM----SQVALFALPEQSWSFISvdQPSADSQT 298
                 44667888999999998887775555....667799999999998884344444444 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 1.8e-05
        Rax2 135 sissifle..ksnsfssssdlkkkkkklsrgfVVlIgLAlALgtvallgllgiilayirkkregye 198
                 +  s +++  +sns +ss++  ++++ +s+   V+ g ++ALg+ al gl+ + l y r+ r++ e
  KKY17785.1 431 TWISSYTNpsNSNSSDSSKSG-SSSGSHSTSQKVGLGAGVALGCSALAGLFAVYLWYSRRLRRKRE 495
                 222333443344444444444.778888888899*********************99766555533 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.011        51      11      30 ..     165     184 ..     159     190 .. 0.80
   2 ?   -0.9   0.0      0.39   1.8e+03      13      42 ..     255     285 ..     248     295 .. 0.82
   3 ?    2.0   0.1     0.046   2.1e+02       1      20 [.     313     333 ..     313     337 .. 0.89
   4 ?    5.0   0.7    0.0056        25      26      41 ..     417     432 ..     409     446 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.011
     Kelch_4  11 pdgtiylfGGrgedgtllnd 30 
                  d ++y+fGG  +d++++ d
  KKY17785.1 165 ADTDLYVFGGMCPDNGTSED 184
                 4689******9999766665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.39
     Kelch_4  13 gtiylfGGrgedg.tllndlylldlstntWr 42 
                  +++l+GG ++++   ++ + l+ l+  +W+
  KKY17785.1 255 QNFVLIGGHTAEAfINMSQVALFALPEQSWS 285
                 5799****99998888888888888888875 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.046
     Kelch_4   1 pRaghsatsipd.gtiylfGG 20 
                 pR gh+a   pd + i++ GG
  KKY17785.1 313 PRSGHTALLSPDgDHIIVLGG 333
                 8*********88689999999 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.0056
     Kelch_4  26 tllndlylldlstntW 41 
                 t+ n++yl++++++tW
  KKY17785.1 417 TTNNNMYLFNTTSKTW 432
                 77799*********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.53
# Mc/sec: 6360.53
//
Query:       KKY17786.1  [L=884]
Description: putative rad52 dna repair protein radc [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.4e-59  197.9   2.5    8.8e-59  197.8   0.0    2.1  2  Rad52_Rad22  Rad52/22 family double-strand break repair prote
    5.6e-05   23.3   0.1    0.00015   21.9   0.1    1.8  1  UBX          UBX domain
     0.0003   20.6   0.3    0.00098   19.0   0.1    2.0  2  UBA          UBA/TS-N domain
  ------ inclusion threshold ------
      0.035   14.3   0.0       0.12   12.6   0.1    1.8  2  Crystallin   Alpha crystallin A chain, N terminal
       0.45   10.6   4.5       0.91    9.6   4.2    1.6  1  CpXC         CpXC protein
        2.3    6.4  13.7        3.8    5.7  13.7    1.4  1  CDC45        CDC45-like protein


Domain annotation for each model (and alignments):
>> Rad52_Rad22  Rad52/22 family double-strand break repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   2.5       2.2   6.7e+03     108     125 ..     155     172 ..     135     193 .. 0.70
   2 !  197.8   0.0   2.9e-62   8.8e-59       1     150 [.     357     506 ..     357     509 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.2
  Rad52_Rad22 108 ekakKeAvtdAlKrAllq 125
                    akKe + dA K+ + +
   KKY17786.1 155 DLAKKEQMKDAAKKRAEK 172
                  447777777777765544 PP

  == domain 2  score: 197.8 bits;  conditional E-value: 2.9e-62
  Rad52_Rad22   1 kietlqskLekklgpeyvsqregksgkkvaylegskviqlaNevFgfnGWsseiesievdeieeeqegqrysvkaealvrvtlkdGtyrediGfgtat 98 
                  +i+tlqs+L+k+lgpey+s r+g +gkk++yl ++kvi laNevFgfnGWss+i+++++d++ee+ +++r++++++++vrvtl+dGt +ediG+g+++
   KKY17786.1 357 EIATLQSRLDKQLGPEYISARPGAGGKKIHYLAAEKVIGLANEVFGFNGWSSSIQNVQIDFVEENPTTGRVRLGLSVIVRVTLRDGTHHEDIGYGQIE 454
                  689*********************************************************************************************** PP

  Rad52_Rad22  99 nvpskgeafekakKeAvtdAlKrAllqfgnvlGnclydleqekkvkklkked 150
                  n+p+k++afek+kKe++tdAlKrAl++fgnvlGnc+yd++  ++v+k+k+e+
   KKY17786.1 455 NCPGKAAAFEKCKKEGTTDALKRALRNFGNVLGNCIYDKDFLQRVTKIKTEP 506
                  **********************************************999876 PP

>> UBX  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   5.1e-08   0.00015       3      80 ..     232     307 ..     230     308 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 5.1e-08
                 TSSEEEEEEEETTSTEEEEEEESSSBHHHHHHHHHHHCCCCCTSEEEEETTTTEEGGCCC.CSBCCCCTTTSCEEEEEE CS
         UBX   3 aedatrlqiRlpdGsrlvrrFkksdtlesvyeyVdsklfekeepFqLltsfPrreltksd.kktLsdlgllpnstlvle 80 
                 a+++tr++  +p+G+   ++++ ++tl +v    + +l ++ +   ++++fPr++++++   +tL+dl+l+p+++l+++
  KKY17786.1 232 AYTETRIRFQTPNGNI-MKTYPVETTLFEVASELSKELGKEVQ--GFVQTFPRKTFDQEFyGETLKDLKLVPSASLIVQ 307
                 67899*********85.67999999999999999999999999..779*****************************97 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   3.3e-07   0.00098       6      37 .]       4      34 ..       2      34 .. 0.96
   2 ?   -1.7   0.0      0.96   2.9e+03      17      28 ..     473     484 ..     471     485 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.3e-07
                HHHHHHTTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA  6 iqrLveMGFdreevveALratgnNeErAveyL 37
                +++L++MGF++++++ A   +g N++ A+e+L
  KKY17786.1  4 LEQLLDMGFEKARAEIAAKKAG-NLQGALEWL 34
                89********************.********9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.96
                 HHHHHHHHHTTT CS
         UBA  17 eevveALratgn 28 
                 ++ ++ALr+ gn
  KKY17786.1 473 DALKRALRNFGN 484
                 67799***9986 PP

>> Crystallin  Alpha crystallin A chain, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1     4e-05      0.12      18      54 ..     278     314 ..     274     316 .. 0.84
   2 ?   -3.6   0.0       4.3   1.3e+04      22      39 ..     480     497 ..     478     501 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4e-05
  Crystallin  18 ffpsRiFDqrF.GehllesdlfptsssalspfYlrpsf 54 
                 +fp   FDq F Ge l +  l+p  +s +   Y r s+
  KKY17786.1 278 TFPRKTFDQEFyGETLKDLKLVPS-ASLIVQLYTRESI 314
                 67*******877***********5.5888888999775 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.3
  Crystallin  22 RiFDqrFGehllesdlfp 39 
                 R F+  +G+ + + d++ 
  KKY17786.1 480 RNFGNVLGNCIYDKDFLQ 497
                 678899999999999875 PP

>> CpXC  CpXC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.2    0.0003      0.91      26     100 ..      55     154 ..      40     168 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0003
        CpXC  26 lkeklldgslfeatCpkCgatakleapllyhdpe..kellillvpeserseee...................eieeaeek..........egytlRlvi 93 
                  + ++ d+  ++ +C++Cg++++ +a++ +h  +  +e + + v e    +ee                   +      +          e+++ +  +
  KKY17786.1  55 NVPQITDDAARSLVCDDCGKRFRGTAEVEFHASKtqHENFSQSVEEIAPLTEEekkaklealreklaakravQ------SeqdkadqkrnEEIRRKSTK 147
                 4679******************999999988654114455555555444444433334444444444333331......02223333444555555566 PP

        CpXC  94 dmaelaE 100
                 + ++l+E
  KKY17786.1 148 ESQDLKE 154
                 6666666 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  13.7    0.0013       3.8     119     215 ..     108     237 ..      26     269 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0013
       CDC45 119 ere.ayealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesddddersrkrrrsepsakklrrqlkkerrkyea.. 214
                 e++ + eal+e+  +++  ++e+++ d++ +ee ++++++e+++ +e+ +kk++++++ ++++++ +d +++kr + + +a+k +r+lk+er k e+  
  KKY17786.1 108 EKKaKLEALREKLAAKRAVQSEQDKADQKRNEEIRRKSTKESQDLKEDLAKKEQMKDAAKKRAEKLADIEAKKRIQAKIAADKEERRLKAERAKAEReg 206
                 222133444444443322223333333333344444444444444444444444444444444666666777777777777777777777777777644 PP

       CDC45 215 ..............................v 215
                                               +
  KKY17786.1 207 ratpptpaaaplptssgpstskpasaytetR 237
                 5555555555555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (884 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2128  (0.11869); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                       118  (0.00658152); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.09u 0.40s 00:00:01.49 Elapsed: 00:00:00.58
# Mc/sec: 4611.74
//
Query:       KKY17787.1  [L=277]
Description: putative integral er membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-27   93.7   0.5      2e-26   92.0   0.2    1.9  2  Motile_Sperm  MSP (Major sperm protein) domain
     0.0056   16.8   3.0     0.0056   16.8   3.0    1.8  2  ApoLp-III     Apolipophorin-III precursor (apoLp-III)
  ------ inclusion threshold ------
      0.023   13.4   0.3      0.031   12.9   0.3    1.1  1  DUF4455       Domain of unknown function (DUF4455)
      0.033   13.4   0.2      0.053   12.7   0.2    1.3  1  GLE1          GLE1-like protein
      0.036   13.9   0.6       0.06   13.1   0.6    1.3  1  Phage_GP20    Phage minor structural protein GP20
      0.051   13.8   1.0      0.089   13.1   1.0    1.3  1  ABC_tran_CTD  ABC transporter C-terminal domain
      0.051   13.8   0.0      0.092   13.0   0.0    1.4  1  FixG_C        IG-like fold at C-terminal of FixG, putative ox
      0.061   13.4   0.6       0.12   12.5   0.6    1.4  1  Med9          RNA polymerase II transcription mediator comple
      0.073   13.6   0.9       0.16   12.5   0.9    1.5  1  Spectrin      Spectrin repeat
      0.092   12.3   4.9       0.14   11.7   4.9    1.2  1  MscS_porin    Mechanosensitive ion channel porin domain
        0.1   12.3   0.4       0.23   11.1   0.4    1.5  1  UPF0181       Uncharacterised protein family (UPF0181)
       0.18   12.6   5.6       0.25   12.1   3.9    2.1  2  FIVAR         FIVAR domain


Domain annotation for each model (and alignments):
>> Motile_Sperm  MSP (Major sperm protein) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.2   1.3e-29     2e-26       2     108 ..       3     107 ..       2     110 .. 0.90
   2 ?    0.1   0.0      0.47   7.1e+02      72      99 ..     109     136 ..     102     145 .. 0.72

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 1.3e-29
                   SEEESSSEEEEESSTSSHEEEEEEEEE-SSSSEEEEEEES-TTTEEEESSEEEETTTCEEEEEEEEESSSSSTTSTC..CEEEEEEEEES-TT-STH CS
  Motile_Sperm   2 lkidPsdllvfaaelnkqgtsklklkNtskkrvaFkvkttapkkyrvrPnvGiikpgesveitvtlkpldeepsekk..kdkfviqylevpgdekde 96 
                   ++++Ps +l f+ ++n+++t+ lk++Nt +++vaFkvkttapk+y+vrPn+G++ p+ +ve++v l++ +e p+ +   +dkf++q++ +   ++d+
    KKY17787.1   3 VELQPS-ELGFKRPFNHEVTEVLKITNTNSNPVAFKVKTTAPKQYCVRPNSGLVPPNGNVEVQVLLQAMKEDPPLDAkcRDKFLVQSVLA---TDDA 95 
                   788998.7788888******************************************************99888644357***********...8888 PP

                   HHHHHHHHHHCC CS
  Motile_Sperm  97 keafkeawkkgk 108
                   ++ ++++w++++
    KKY17787.1  96 PSNVAAIWQTVE 107
                   888999999876 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.47
                   SSTTSTCCEEEEEEEEES-TT-STHHHH CS
  Motile_Sperm  72 eepsekkkdkfviqylevpgdekdekea 99 
                   + +s+ +++k+++ +l ++++ k++  a
    KKY17787.1 109 TGKSAIQEKKIRVNFLPADSGDKTNGVA 136
                   4566667999999999997777776555 PP

>> ApoLp-III  Apolipophorin-III precursor (apoLp-III)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.3   6.4e+03      21      39 ..      21      39 ..      13      43 .. 0.51
   2 !   16.8   3.0   3.7e-06    0.0056      38      98 ..     192     251 ..     188     255 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.3
   ApoLp-III 21 eevvetiKensenlvdqlk 39
                 ev++   +ns+ ++ ++k
  KKY17787.1 21 TEVLKITNTNSNPVAFKVK 39
                3444444455555554444 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 3.7e-06
   ApoLp-III  38 lkqvikslqeelkkksdeleealkevkkkieetadklseenPevkk.kaqelqekvQsgvqs 98 
                 + + ++ +++++ + s+el++ l ++k++i++ + +ls   P++ + k+q+ +ekvQ+ vq+
  KKY17787.1 192 IASAAAAVKDSVPTSSEELKQQLADAKAQISKLTGQLSD--PGLRQrKVQQANEKVQQVVQQ 251
                 56678899*****************************98..9986549**********9996 PP

>> DUF4455  Domain of unknown function (DUF4455)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   2.1e-05     0.031      19      80 ..     192     252 ..     190     255 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.1e-05
     DUF4455  19 lasiseeveplileageellkklsesdeeieklfkkleddedlekltiqelqelwdkVaees 80 
                 +as ++ v++++ + +eel+++l++  ++i kl+++l +d  l +++ q+ +e  ++V ++s
  KKY17787.1 192 IASAAAAVKDSVPTSSEELKQQLADAKAQISKLTGQL-SDPGLRQRKVQQANEKVQQVVQQS 252
                 6788899999***************************.*************99999888776 PP

>> GLE1  GLE1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   3.6e-05     0.053       9      61 ..     198     254 ..     191     273 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.6e-05
        GLE1   9 nlleqvke.dkelkkllgdlkrkInpkvgQltnss...eqlkkitkelkellesgkp 61 
                  ++++v + ++elk++l d+k +I++  gQl+       ++++  ++++++++++ +
  KKY17787.1 198 AVKDSVPTsSEELKQQLADAKAQISKLTGQLSDPGlrqRKVQQANEKVQQVVQQSGE 254
                 56666666699*********************9887889999999999999966644 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.6     4e-05      0.06      21      68 ..     201     248 ..     188     255 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4e-05
  Phage_GP20  21 deveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkka 68 
                 d+v +  ++lk+ql+d+  q+++L ++  d    q+++++ ++k+++ 
  KKY17787.1 201 DSVPTSSEELKQQLADAKAQISKLTGQLSDPGLRQRKVQQANEKVQQV 248
                 6788999*********************************99999886 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.0   5.9e-05     0.089      11      55 ..     208     250 ..     206     254 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.9e-05
  ABC_tran_CTD  11 eeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleelea 55 
                   eel ++++   ++i++l+ +l+dp+l  ++ k+++++++ +++ +
    KKY17787.1 208 EELKQQLADAKAQISKLTGQLSDPGL--RQRKVQQANEKVQQVVQ 250
                   899**********************5..56778888888887755 PP

>> FixG_C  IG-like fold at C-terminal of FixG, putative oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.2e-05     0.092      37      91 ..      24      75 ..      23     101 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.2e-05
                EEEEE-SSS-EEEEEEEES-SS-EE.E.S--EEEE-TT-EEEEEEEEEE-GGG-S CS
      FixG_C 37 lkilNktekprrytlsveglpglelagraekeitvapgekrkvpvfvrvpaealk 91
                lki+N+ ++p +++++ +  ++  +  r  ++  v+p+++++v v +++ +e+ +
  KKY17787.1 24 LKITNTNSNPVAFKVKTTAPKQYCV--R-PNSGLVPPNGNVEVQVLLQAMKEDPP 75
                8*****************6656666..4.46777***************999844 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.6   7.9e-05      0.12      23      66 ..     202     245 ..     189     252 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.9e-05
        Med9  23 dletktgelrhkLkkarelirelpg.......idrsveeqeaeieeleeql 66 
                  ++t+  el+++L  a+++i++l g               ++++++ +e++
  KKY17787.1 202 SVPTSSEELKQQLADAKAQISKLTGqlsdpglR-------QRKVQQANEKV 245
                 6899*********************55555443.......44444444433 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.9   0.00011      0.16      25      72 ..     206     254 ..     200     259 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
                 CCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHTTH CS
    Spectrin  25 ssedlgkdleevqallkkhkaleaelaaqqervkalnelaekl.ldegh 72 
                 sse+l ++l++++a++ k+++   ++  +q++v++ ne  +++ +++g+
  KKY17787.1 206 SSEELKQQLADAKAQISKLTGQLSDPGLRQRKVQQANEKVQQVvQQSGE 254
                 79999********************************999999677665 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   4.9   9.3e-05      0.14      70     123 ..     197     250 ..     190     255 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.3e-05
  MscS_porin  70 askeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlvelqtrperaqqqlt 123
                 a  ++   +s+eeL q+l+++++q ++l+ ql++   + ++ q++ e++qq   
  KKY17787.1 197 AAVKDSVPTSSEELKQQLADAKAQISKLTGQLSDPGLRQRKVQQANEKVQQVVQ 250
                 5556666789****************************************9765 PP

>> UPF0181  Uncharacterised protein family (UPF0181)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   0.00015      0.23      14      38 ..     239     263 ..     230     265 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00015
     UPF0181  14 QqAVEkIqeLmaqGmssgeAIalVA 38 
                 QqA Ek+q+ ++q+  sg   ++VA
  KKY17787.1 239 QQANEKVQQVVQQSGESGVPLQIVA 263
                 9******************999999 PP

>> FIVAR  FIVAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.5   3.8e+03      32      50 ..      16      34 ..      13      38 .. 0.75
   2 ?   12.1   3.9   0.00017      0.25      25      69 ..     207     251 ..     191     252 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.5
                HHHHHHHHHHHC...TSTT CS
       FIVAR 32 ynnalsaAnailnktnnpn 50
                +n  ++++ +i n ++np 
  KKY17787.1 16 FNHEVTEVLKITNTNSNPV 34
                6778888888887777775 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00017
                 -CCHHHHHHHHHHHHHHHC...TSTTTTCCCHHHHHHHHHHHHHH CS
       FIVAR  25 dqdkkdaynnalsaAnailnktnnpnatveqVnqalanlnqaina 69 
                 ++++k+++ +a++++ ++  + ++p + +  V+qa+++++q+ ++
  KKY17787.1 207 SEELKQQLADAKAQISKLTGQLSDPGLRQRKVQQANEKVQQVVQQ 251
                 57899*************9999********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1097  (0.0611858); expected 358.6 (0.02)
Passed bias filter:                      774  (0.0431703); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.67u 0.35s 00:00:01.02 Elapsed: 00:00:00.53
# Mc/sec: 1558.71
//
Query:       KKY17788.1  [L=383]
Description: putative dihydroceramide deltadesaturase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-26   91.6   8.4      7e-26   91.6   8.4    1.8  2  FA_desaturase  Fatty acid desaturase
    1.5e-16   59.6   0.5    3.4e-16   58.5   0.5    1.6  1  Lipid_DES      Sphingolipid Delta4-desaturase (DES)


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.2    0.0021        19     134     179 ..      67     122 ..      43     125 .. 0.70
   2 !   91.6   8.4   7.8e-30     7e-26       6     251 ..     108     341 ..     103     344 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0021
  FA_desaturase 134 k........wrllawlllllawlglwlalllllglall..lwlvplllllfllalv 179
                    +          ++ w +ll++ + +++a+ll +++ l+  + l ++++++++++ +
     KKY17788.1  67 PevlklcgpEAWTKWTVLLVVSIQILAAYLLRSAPILSprFLLTAYIVGATCNQNL 122
                    14444446677888888888779999999999999999********9999988766 PP

  == domain 2  score: 91.6 bits;  conditional E-value: 7.8e-30
  FA_desaturase   6 lllalllglf.llgitgslaHeaaHgalfkkrklnrwlndllgallglplgisys.awrisHlrHHaytngpdeDpdlaplalsrfeglfryllrl 99 
                    ll a+++g+   +++ +  +He +H+  f    ++++ln++l+ ++ lp+g++ys a+r  Hl+HH+ ++ ++ D+dl+    +  e++   +l  
     KKY17788.1 108 LLTAYIVGATcNQNL-FLAIHEISHNLAF----RTPILNRFLAIFANLPIGVPYSaAFRPYHLTHHKSLGVDGLDTDLP----TALEAV---FLDS 191
                    445588888855666.6*********999....7777777777779******88637********************98....555555...5557 PP

  FA_desaturase 100 llgllvlgwllalvlglwlrrlarrrapsksrrrkwrllawlllllaw..lglwlalllllglalllwlvplllllfllalvl.nyveHyg..... 187
                    llg  ++          + +++++  +p+ +++ + + + +l l++ +    +++ + + ++l   ++l+  +l+++l+ +   +++eHy      
     KKY17788.1 192 LLGKAFFC---------TFQIFFYALRPMMVYKDPFTKIHALNLFVELtfDTIIVKTMGINPLI--YFLLSSFLAGSLHPCAGhFIAEHYVfnapd 276
                    77777777.........66666666666666666555555555554322212222222333333..9**************99999999999**99 PP

  FA_desaturase 188 ......gdwgerqvetsasirsaswllnlltgnlnyHieHHlfPgvpwyrLpelhrrlrellpehglpyr 251
                          ++ ++ ++  ++s++    +lnllt+n ++H+eHH fP+vpw rL +l+++  e++ +  lpy+
     KKY17788.1 277 ttgktpEELKNIPIPETYSYY---GILNLLTYNVGLHNEHHDFPAVPWTRLTKLREIAHEFY-D-PLPYH 341
                    999877777777777777777...******************************98655554.4.46665 PP

>> Lipid_DES  Sphingolipid Delta4-desaturase (DES)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.5   3.7e-20   3.4e-16       3      36 ..      44      77 ..      42      78 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 3.7e-20
   Lipid_DES  3 sDFeWvytdePHasRRkeILkkhPeikkLmGpdp 36
                + F W+yt+ePH+sRR++I+k+hPe+ kL+Gp+ 
  KKY17788.1 44 DHFFWTYTEEPHRSRRHAIIKAHPEVLKLCGPEA 77
                56******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.51
# Mc/sec: 2256.23
//
Query:       KKY17789.1  [L=198]
Description: putative lipoyltransferase and lipoate-protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.069   13.1   0.4        2.9    7.9   0.0    2.4  2  Mistic    Membrane-integrating protein Mistic


Domain annotation for each model (and alignments):
>> Mistic  Membrane-integrating protein Mistic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1    0.0069   1.2e+02      11      27 ..      26      42 ..      24      46 .. 0.87
   2 ?    7.9   0.0   0.00016       2.9      49      66 ..     167     184 ..     152     190 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.0069
                TTTHHHHHHHHH--SSS CS
      Mistic 11 kmnegldafieLYNese 27
                ++ne  d ++++YN s+
  KKY17789.1 26 RVNERHDIVMDMYNASQ 42
                57999*********986 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00016
                 HTSSSS-HHHHHHHHHHH CS
      Mistic  49 kYGeevvnkKiNtivkev 66 
                 ++G+++v +KiNt +ke+
  KKY17789.1 167 AHGKNTVAEKINTGMKEL 184
                 79***********98885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1341.16
//
Query:       KKY17790.1  [L=325]
Description: putative short-chain dehydrogenase reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-19   69.3   0.0    1.6e-17   63.6   0.0    2.1  2  adh_short     short chain dehydrogenase
    7.2e-09   35.8   0.0      1e-08   35.3   0.0    1.2  1  KR            KR domain
    1.4e-08   34.6   0.0    3.7e-08   33.2   0.0    1.6  2  adh_short_C2  Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   2.7e-21   1.6e-17       1     125 [.      26     151 ..      26     155 .. 0.88
   2 !    3.5   0.0    0.0071        43     156     187 ..     210     240 ..     195     245 .. 0.83

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 2.7e-21
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT....TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGG CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee....gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfs 94 
                 k+++vtG   G+G++ a+++++  a++v+ + r+++k ++++k++++     ++ + ++++D+ ++++v+a+ +k+ ++l ++d+++ NAGi   +p +
  KKY17790.1  26 KTIIVTGSNTGLGLEAARHFVRLHASTVIlAVRNSSKGNAAKKSIEASenckQDIVEVWPLDLCSYDSVQAFAKKV-DELPRVDAIIENAGI---SP-K 119
                 79***********************99987889999******9999887664445999***************999.99*************...34.4 PP

                 GCSHHH.HHHHHHHHTHHHHHHHHHHHHHHHH CS
   adh_short  95 elseee.wervievNltgvflltravlpamlk 125
                 e++  e  e++i +N+ ++fll+ +vlp +++
  KKY17790.1 120 EFTVIEgHESTITTNVISTFLLALLVLPRLKE 151
                 44554549********************9885 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0071
                 HHHHHHHHHHHHGGGTEEEEEEEESSBSSHHH CS
   adh_short 156 vagltrslakelaptgirvnavaPGlvdTdma 187
                 v+ l++s+++ +a+  + +n+v+PGl+ +++ 
  KKY17790.1 210 VRELVDSIRDNHAYP-VVINCVNPGLCHSQIF 240
                 778888999888886.**********998875 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.7e-12     1e-08       2      94 ..      27     119 ..      26     146 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.7e-12
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrd 94 
                 t ++tG   gLGle ar+ ++ +a++++l  R++++ +++k+ i++ e+  +  vev ++D+ + d+v+a  ++++ e p++  +i  Ag++ +
  KKY17790.1  27 TIIVTGSNTGLGLEAARHFVRLHASTVILAVRNSSKGNAAKKSIEASENCkQDIVEVWPLDLCSYDSVQAFAKKVD-ELPRVDAIIENAGISPK 119
                 679******************************99999999999999887356799*******************8.889**********9765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   6.2e-12   3.7e-08       4     122 ..      35     154 ..      32     171 .. 0.78
   2 ?   -2.2   0.0      0.41   2.5e+03     140     176 ..     198     237 ..     186     248 .. 0.66

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 6.2e-12
                   TSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTT...SE.E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea.kkrveelaeelg...ae.v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsre 93 
                    g+G ++A+++ +  a+ v+  +++++  +++++  e+ +   ++ v   ++D  + ++v+a++++v +++ ++D ++ nagi+pk     + t  e
    KKY17790.1  35 TGLGLEAARHFVRLHASTVILAVRNSSkGNAAKKSIEASEnckQDiVevWPLDLCSYDSVQAFAKKV-DELPRVDAIIENAGISPK-----EFTVIE 125
                   79***********999866666655553444444333332232555366************998886.5689**************.....456679 PP

                   HHHHHHHHHTHHHHHHHHHHHHHCTSCCE CS
  adh_short_C2  94 efdraldvnlyslfllakaalplmkeggs 122
                   + + ++ +n+ s+flla  +lp +ke+++
    KKY17790.1 126 GHESTITTNVISTFLLALLVLPRLKETAR 154
                   999*******************9998765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.41
                   HHHHHHHHHHHHHHHHHHHHGG...GTEEEEEEEE--BHC CS
  adh_short_C2 140 aygaaKaalealtrylAvelgp...kgiRvNavspgpikT 176
                    y+++K   + ++r l  ++ +   + + +N+v pg+ + 
    KKY17790.1 198 RYNVSKLLQIFVVRELVDSIRDnhaYPVVINCVNPGLCHS 237
                   5666666666666666554444222567899999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2065.12
//
Query:       KKY17791.1  [L=346]
Description: hypothetical protein UCRPC4_g05424 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.064   13.8   1.0       0.44   11.1   0.1    2.5  2  Plug      TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   2.5e-05      0.44      32      71 ..      35      79 ..      16     102 .. 0.78
   2 ?    0.7   0.1     0.042   7.5e+02      61      85 ..     202     226 ..     106     239 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.5e-05
                STTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESC......C CS
        Plug 32 vpgvnvsssgggggassisiRGlgsnrvlvlvDGvpian......g 71
                 p v++  ++g+g +     RG +sn v++  DGv++++       
  KKY17791.1 35 NPKVTI-HGQGQGWQVHPRRRGPSSNTVRYSYDGVEQSSinssdfY 79
                799999.99999999999******************9985544431 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.042
                 EEETTEEESCCCCSCTCGCSSBGGG CS
        Plug  61 vlvDGvpianggsgagdlssidped 85 
                  ++D+ p +  ++++ + + ++pe+
  KKY17791.1 202 RFIDDHPSTIYNNSHAQGNLVNPEA 226
                 4566666666677777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.48
# Mc/sec: 2187.98
//
Query:       KKY17792.1  [L=166]
Description: extracellular protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-25   89.9   0.0    2.2e-25   89.2   0.0    1.3  1  Lipase_3       Lipase (class 3)
    0.00051   20.7   0.0    0.00055   20.6   0.0    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
    0.00058   19.2   0.0    0.00058   19.2   0.0    1.2  1  Hydrolase_4    Serine aminopeptidase, S33
     0.0017   18.5   0.0     0.0017   18.5   0.0    1.3  1  Thioesterase   Thioesterase domain
  ------ inclusion threshold ------
      0.015   14.9   0.0      0.017   14.8   0.0    1.2  1  Esterase       Putative esterase
      0.016   14.9   0.1      0.034   13.8   0.0    1.5  2  Abhydrolase_8  Alpha/beta hydrolase
      0.017   14.9   0.0      0.026   14.2   0.0    1.3  1  PGAP1          PGAP1-like protein
      0.023   14.4   0.0      0.032   14.0   0.0    1.2  1  Abhydrolase_5  Alpha/beta hydrolase family
      0.028   13.9   0.0       0.04   13.4   0.0    1.2  1  DUF676         Putative serine esterase (DUF676)
      0.045   13.4   0.0      0.063   12.9   0.0    1.3  1  Abhydrolase_1  alpha/beta hydrolase fold
       0.05   13.6   0.1      0.065   13.2   0.1    1.5  1  Cutinase       Cutinase


Domain annotation for each model (and alignments):
>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.0   1.3e-28   2.2e-25      37     139 ..       1      97 [.       1      99 [. 0.97

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 1.3e-28
                 HHHHHHHHS-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHHHHHHTT-SS---EEEEEES----B-HHHHHHHHT-TTEEEEEEEETT--GG CS
    Lipase_3  37 sgfleayeeslreqvlkelkrllekypeysivvtGHSLGgalAlLaaldlvengenekkkvtvvtfGqPrvgnkefaklvdsqlnkkvlrvvntnDivP 135
                 +gf++++   +r+ +l+ +k+  ++yp+y+ v++GHSLGga+A++aa +l+++g     +++++tfG+Prvgn + a+++++q  +  +rv++t+D+vP
  KKY17792.1   1 MGFWDSWL-EARDGILSAIKDASDSYPDYENVIVGHSLGGAIATIAAGQLRTEG----YPAGLFTFGSPRVGNPTTAEYISAQDGE-QYRVTHTDDLVP 93 
                 699****9.*********************************************....99*********************99888.9*********** PP

                 G-S- CS
    Lipase_3 136 rlpp 139
                 +lpp
  KKY17792.1  94 KLPP 97 
                 ***8 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   3.4e-07   0.00055      56     105 ..      18      76 ..       2     150 .. 0.56

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3.4e-07
                    HHCCTT..TTSE..EEEEETCHHHHHHHHHHCC......EE..EEES-..----TTT.....S CS
  Abhydrolase_6  56 lldelaagggpv..vlvGHSlGGalalaaapla....lvvg..vlldppptalpagl.....l 105
                    + d+ + ++++   v+vGHSlGGa+a+ aa ++      +g   + +p    ++ +       
     KKY17792.1  18 IKDASD-SYPDYenVIVGHSLGGAIATIAAGQLrtegYPAGlfTFGSP---RVGNPTtaeyiS 76 
                    222222.33333559*************77777777744555455555...222222123331 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   3.6e-07   0.00058      50      99 ..       2      53 ..       1     126 [. 0.83

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.6e-07
  Hydrolase_4 50 ghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyl..lrypd 99
                 g ++s+ +  d + ++++ + + +p+ + +++GhS+GG+ia+ ++  lr + 
   KKY17792.1  2 GFWDSWLEARDGILSAIKDASDSYPDYENVIVGHSLGGAIATIAAgqLRTEG 53
                 678999999999999***************************9986544444 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0     1e-06    0.0017      69     103 ..      31      64 ..      14     148 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1e-06
                   EEEEETHHHHHHHHHHHHHHHCT-SEEEEEEESCC CS
  Thioesterase  69 alfGhSlGgllAfevArqLesqGlavkslflidss 103
                   +++GhSlGg++A  +A qL+ +G  +++lf ++s+
    KKY17792.1  31 VIVGHSLGGAIATIAAGQLRTEGY-PAGLFTFGSP 64 
                   689*******************96.7889999965 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0     1e-05     0.017     102     134 ..      14      47 ..       4      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1e-05
                 HHHHHHHHCSEECCC.EEEEEETHHHHHHHHHHH CS
    Esterase 102 Llplldanfrtapdg.ravaGqSmGGlgALilal 134
                 +l+ +++  +++pd+ ++++G+S+GG +A i+a 
  KKY17792.1  14 ILSAIKDASDSYPDYeNVIVGHSLGGAIATIAAG 47 
                 677788888999999**************99985 PP

>> Abhydrolase_8  Alpha/beta hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.1e-05     0.034     105     174 ..      24      96 ..      12     100 .. 0.79
   2 ?   -1.9   0.0       1.4   2.3e+03      68      84 ..      99     115 ..      98     127 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.1e-05
  Abhydrolase_8 105 svpgqhlallgHSYGSlvaslAlddaaseV..sdvvlyGSPGleaesaa.kLgledarvfvmrgadDlienvp 174
                    s p+ +  ++gHS G  +a++A+ ++ +e   +    +GSP ++  ++a  +  +d++ +  + +dDl+ ++p
     KKY17792.1  24 SYPDYENVIVGHSLGGAIATIAAGQLRTEGypAGLFTFGSPRVGNPTTAeYISAQDGEQYRVTHTDDLVPKLP 96 
                    468888999****************5555411566778****98765551689999*************9986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.4
  Abhydrolase_8  68 WlgYeaPagaskevatd 84 
                    WlgYe  + + + + ++
     KKY17792.1  99 WLGYEHVSPEYWITSDT 115
                    99998765555554444 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.6e-05     0.026      91     137 ..      28      73 ..       9      93 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.6e-05
       PGAP1  91 tsviliGHSmGGivaraaltlknyikqsvntiltlasPhalpplsfd 137
                  + +++GHS+GG +a  a+   +  ++    ++t +sP +  p + +
  KKY17792.1  28 YENVIVGHSLGGAIATIAAGQLR-TEGYPAGLFTFGSPRVGNPTTAE 73 
                 445789*********77666555.57777889999999888887655 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.9e-05     0.032      46      76 ..      18      47 ..      14      80 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.9e-05
  Abhydrolase_5 46 aeeiikeapklekfvvgGhslGGvvasrfaa 76
                   ++++ +++p+ e  v+ GhslGG++a+  a 
     KKY17792.1 18 IKDASDSYPDYE-NVIVGHSLGGAIATIAAG 47
                   567889999988.6888*******9876554 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.5e-05      0.04      68     104 ..      15      53 ..      11      76 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.5e-05
      DUF676  68 levvkkkkdk..nkkiSfvghSlGgliaraaiaklkeke 104
                 l+ +k+++d+  +    +vghSlGg ia++a ++l+ + 
  KKY17792.1  15 LSAIKDASDSypDYENVIVGHSLGGAIATIAAGQLRTEG 53 
                 566666666666334458***************988543 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.8e-05     0.063      68      93 ..      23      48 ..      14      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.8e-05
                   HHCTTSSEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_1 68 dalgddkltlvGhSmGGmialayaae 93
                   d+++d + ++vGhS+GG+ia+ +a +
     KKY17792.1 23 DSYPDYENVIVGHSLGGAIATIAAGQ 48
                   666777778*************9976 PP

>> Cutinase  Cutinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1     4e-05     0.065      61     100 ..      10      49 ..       4     156 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4e-05
                 HHHHHHHHHHHHHHH-TT-EEEEEEETHHHHHHHHHHTT. CS
    Cutinase  61 gakeaaalvqslaskCPdtkivlgGYSqGaqvidnaiegg 100
                 + + + ++++++  + Pd + v++G S G+++++ a+ + 
  KKY17792.1  10 ARDGILSAIKDASDSYPDYENVIVGHSLGGAIATIAAGQL 49 
                 556778999*************************999882 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1249.01
//
Query:       KKY17793.1  [L=174]
Description: hypothetical protein UCRPC4_g05426 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1221.72
//
Query:       KKY17794.1  [L=733]
Description: putative dna mismatch repair protein msh5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-16   59.1   0.0    1.3e-15   58.2   0.0    1.4  1  MutS_III  MutS domain III
    6.8e-10   39.3   0.1    4.9e-09   36.5   0.1    2.3  1  MutS_V    MutS domain V


Domain annotation for each model (and alignments):
>> MutS_III  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   1.4e-19   1.3e-15      20     191 .]     177     472 ..     149     472 .. 0.78

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 1.4e-19
                 -HHHHH---SSHHHHHHHHHHHH--BS-HHHHHHHHHHHHHT..TT.HHHHH...HHHTT---HHHHHHHHHTT---HHH............HHH.... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxx............xxx.... RF
    MutS_III  20 sLlgvldrTvTamGaRlLrewllqPltdleeInaRldaVeeleneelreelr...ellrrlpDleRllsrislgkakard............lka.... 99 
                  L++ l   +T++G+  Lr+ +l+P+td + I aR+d V+ +++++ +++l    +++ +++++  ++ ++++g  + ++            l      
  KKY17794.1 177 GLFHHLA--RTPQGKTQLRQIFLRPSTDMNIIGARHDFVAIFSRPDNEASLKrmsKSFSKIKNVRPVMVQLHKGINTGTNklggfksgvwatL-Ldfaf 272
                 5666655..9******************************99877755555543355667779888888888875443322233222222221.02222 PP

                 ....HHHHHH......HHHTTTTT---SSTHHHHHHHHH...HHHHHHB-SS--SSGGGS--B-T.................................. CS
                 ....xxxxxx......xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx.................................. RF
    MutS_III 100 ....llealk......aleelvallekeklaeseeesla...elleeaideeplalekegedlra.................................. 151
                     ++e++       +l+   +++++ +++     +l+   +l+++ +d +++ +++++ ++                                    
  KKY17794.1 273 yaidIRESFGevsgagTLPIVSQAMQAVDAD-----QLRrigSLINDVVDIDQSIEQHRTIVKHGvqdkldsmkrtydgldnllcytakviqgtipagm 366
                 2233333333333333333333333222222.....2334449******************************************************** PP

                 ..................................................................HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH CS
                 ..................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III 152 ..................................................................iealeqelfqelleeveealerlrrlaealaeL 184
                                                                                   i +le e+ ++l ++v ++ + l ++++++ eL
  KKY17794.1 367 eiqvnvvyfpqlgfhitlplnpetgkpvynggnirwetifttqtqsffkddrmremdeeigdlwsmICELEIEISHDLAQRVLAHEKLLIQASDVCGEL 465
                 ******************************************************************9999999*********9999************* PP

                 HHHHHHH CS
                 xxxxxxx RF
    MutS_III 185 DvllSlA 191
                 D l++lA
  KKY17794.1 466 DSLVALA 472
                 *****99 PP

>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.1   5.5e-13   4.9e-09      93     182 ..     557     656 ..     530     661 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 5.5e-13
                 HHHHHHHHHHHHHHHHT.T--.EEEEEES-GGGGGHH..HHSTTEEEEEEEEE......EETTEEEEEEEEEES--SS--HHHHHHHTT--HHHHHHHH CS
      MutS_V  93 ydGlaialavaeyllek.ika.ktlfatHyheltkla..ekleevknlhlavk......eeeedivflykvkegaaeksyGikvaklaglPesvverAr 181
                 + G ++a  v+++ll+   ++ k++ atH+he+ +      +++++  h++v+        +e++++ly++++g +++s+G + a+l g+ + +++rA+
  KKY17794.1 557 THGAGLAVGVFQHLLSLgEECpKVIAATHFHEIFEQGflGPHSRLEMAHMEVRidkvkaAANEEVTYLYNLRTGPSSQSFGTNCAALNGISAPIIKRAN 655
                 5799**********9641455267889******98751145778888888887778887889***********************************97 PP

                 H CS
      MutS_V 182 e 182
                  
  KKY17794.1 656 L 656
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 4710.05
//
Query:       KKY17795.1  [L=797]
Description: putative eukaryotic ribosome biogenesis protein 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.3e-106  356.4  10.5   1.9e-106  355.8  10.5    1.3  1  BOP1NT       BOP1NT (NUC169) domain
    7.5e-18   64.6   8.7    4.2e-09   36.9   0.4    5.3  6  WD40         WD domain, G-beta repeat
    3.7e-05   23.9   0.0      0.093   13.0   0.0    3.5  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> BOP1NT  BOP1NT (NUC169) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  355.8  10.5  3.2e-110  1.9e-106       1     260 []     163     423 ..     163     423 .. 0.96

  Alignments for each domain:
  == domain 1  score: 355.8 bits;  conditional E-value: 3.2e-110
      BOP1NT   1 YddydhiGYdidgkkimkeakkdeldkllekiddpkawrtvkDkktgkevkLsdeelelikrlqkgelpdeeydpyedvvelftseeeihplseapepk 99 
                 Yd+y+hiGY+i+gkkim++ak+++ld+ll++id pk w+ ++D++tgk ++Ls+eel+l++++q++e++de+y+pye++ve+fts++ei+pl++apepk
  KKY17795.1 163 YDQYPHIGYNINGKKIMRPAKGQALDALLDSIDVPKGWTGLTDPNTGKPLQLSQEELQLLRKIQQNEFADETYNPYEPTVEYFTSKTEIMPLTAAPEPK 261
                 9************************************************************************************************** PP

      BOP1NT 100 rrfipskweakkvaklvrairkgrikl.....ekkekeee......ekvydlWedeeeeeeekrkkeehipapklklPgheeSYnPpeeyllteeekke 187
                 rrf+psk+e+k+++k+vrair+gri+      e      e       + yd+W+de+ + +    +  h+papkl++Pg eeSY+Pp+ey+++++e+k+
  KKY17795.1 262 RRFVPSKHEQKRIMKIVRAIREGRIQPykppeE------EkeedegIQKYDIWADEQPRPD----HIMHVPAPKLPPPGFEESYHPPPEYIPDKAERKA 350
                 **************************7665432......223345699*******999654....6778****************************** PP

      BOP1NT 188 weeadpedrkknfipqkfeslrkvpaYekfvkerFeRcLDLyLcpRvrkkrlnidpesLlPkLPspkdLkPFP 260
                 weead+edr+k+f+p++++slrkvp+Ye+fvke+FeRcLDLyL+pRvr+++lnidpesLlPkLP+p++LkPFP
  KKY17795.1 351 WEEADEEDREKDFLPTDHDSLRKVPGYERFVKEKFERCLDLYLAPRVRRSKLNIDPESLLPKLPDPEELKPFP 423
                 ************************************************************************9 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.4     7e-13   4.2e-09       4      37 ..     427     461 ..     424     462 .. 0.91
   2 ?    1.0   0.2      0.16   9.3e+02       9      27 ..     569     586 ..     562     593 .. 0.79
   3 ?   -2.3   0.0       1.7   9.9e+03      17      35 ..     618     644 ..     602     647 .. 0.57
   4 ?   -1.9   0.1       1.2   7.4e+03      20      33 ..     680     693 ..     658     695 .. 0.64
   5 !    7.0   0.0    0.0019        11       4      37 ..     706     740 ..     703     741 .. 0.86
   6 !   20.3   0.0   1.3e-07   0.00076       3      37 ..     756     796 ..     754     797 .] 0.87

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 7e-13
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  + ++GH + v+sl+ +p+g wla+G+dDg+vr+W
  KKY17795.1 427 ATLFRGHrGRVRSLSIDPSGVWLATGGDDGHVRVW 461
                 55699**888************************* PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.16
                 SSSSE.EEEEEETTSSEEEE CS
        WD40   9 GHssv.tslafspdgawlas 27 
                 +H  v + l+f+++g+++++
  KKY17795.1 569 AH--VpRTLSFHRHGNYFVT 586
                 67..8899*********987 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.7
                 E.........EETTSSEEEEEETTSEEE CS
        WD40  17 a.........fspdgawlasGsdDgtvr 35 
                 +         f+p+++ l+ +   + +r
  KKY17795.1 618 KgggpaqtaqFHPSKPILFVAN-QRVIR 644
                 3333334444899998887666.66666 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.2
                 TTSSEEEEEETTSE CS
        WD40  20 pdgawlasGsdDgt 33 
                  +g+ l+ +s+D++
  KKY17795.1 680 VSGDNLIVSSYDRK 693
                 35555555666886 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.0019
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  +tl+ H + ++s +++p  +++a +sdDgt+ i+
  KKY17795.1 706 YKTLRYHsKAIRSARYHPRLPLFADASDDGTIQIF 740
                 578889*888*************96688****986 PP

  == domain 6  score: 20.3 bits;  conditional E-value: 1.3e-07
                 EEEEEESS...SS...EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH...ss...vtslafspdgawlasGsdDgtvriW 37 
                 +l++l+GH   +    v  ++++p  aw +s + Dgt r+W
  KKY17795.1 756 PLKVLKGHridKQglgVMEVDWHPREAWCVSVGADGTARLW 796
                 799*****8753389*************987777******* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.6e-05     0.093      37      89 ..     433     489 ..     427     493 .. 0.88
   2 ?    3.9   0.0     0.011        68      38      68 ..     713     743 ..     706     755 .. 0.88
   3 !    4.5   0.0    0.0074        44       4      64 ..     722     795 ..     720     797 .] 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek....avtclgW 89 
                  + ++vrsL+  p+g  La + +dg+vr+ +  +g+ + s++ +++     av+ + W
   KKY17795.1 433 HRGRVRSLSIDPSGVWLATGGDDGHVRVWELLTGRQLWSVDLNTSAsaleAVNVVRW 489
                  6789*********************************99999887666777777777 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.011
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldae 68 
                  ++ +rs +++p   l+a a +dg++++++ae
   KKY17795.1 713 SKAIRSARYHPRLPLFADASDDGTIQIFHAE 743
                  67899999*********************98 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.0074
  ANAPC4_WD40   4 cptmDLiAlatedgellvfRlng............qrvwtl.eedkedsevrsLaWkpdgklLavaysdgevrl 64 
                   p   L+A a++dg +++f  +              +v ++   dk++  v ++ W+p +   + + +dg+ rl
   KKY17795.1 722 HPRLPLFADASDDGTIQIFHAEVssdamsnvrivpLKVLKGhRIDKQGLGVMEVDWHPREAWCVSVGADGTARL 795
                  56666667777777777776666555555544444455555666899999999999999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (797 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.36s 00:00:01.12 Elapsed: 00:00:00.51
# Mc/sec: 4660.45
//
Query:       KKY17796.1  [L=411]
Description: putative c6 finger domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.54
# Mc/sec: 2298.76
//
Query:       KKY17797.1  [L=281]
Description: putative protein kinase activator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-47  159.7   0.4    5.4e-46  156.7   0.4    2.0  1  Mob1_phocein  Mob1/phocein family
  ------ inclusion threshold ------
       0.15   12.2   0.3       0.43   10.7   0.0    1.8  2  KIP1          KIP1-like protein


Domain annotation for each model (and alignments):
>> Mob1_phocein  Mob1/phocein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.7   0.4   6.1e-50   5.4e-46       5     169 .]      39     258 ..      35     258 .. 0.93

  Alignments for each domain:
  == domain 1  score: 156.7 bits;  conditional E-value: 6.1e-50
                   xxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Mob1_phocein   5 gsgdlkeavklPkgedlneWlavhvvd..........ffneinllygtisefcteqscptmsagpkyeYlwadeevkkpvklsApeYidllmdwies 91 
                    +g++ ++ + Pk+++l eWla+++v+          +++e+ + +g+   +c+e++cptmsag +++Y+w + + ++p+k++Ap Yi ++ +wi  
    KKY17797.1  39 VKGNFLTLAAQPKNVELGEWLAHQLVEmnrlltgmlqVIQEVDTNTGM--PICNEHTCPTMSAG-RLTYTWLE-N-GRPAKIPAPSYIIRVQKWIVG 130
                   5779***********************777766666666666665555..78***********9.8*******.4.8******************** PP

                   xxxx.................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
  Mob1_phocein  92 qlnd.................................................lfpskagspfpknflkvvkkilkrlfrvyaHiYihHfee.iael 138
                   +++d                                                   +  + s fp+nf +++k+i+k++fr+yaH+Y++Hf++ + ++
    KKY17797.1 131 KIQDprifptdpptaiaqtayasgdgsqpgsstplampptnlnnsvtslsganDQWIGKPSGFPRNFHQDCKSIIKQMFRCYAHLYHNHFDNpFWHI 227
                   ************************************************9998877777779*******************************9**** PP

                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Mob1_phocein 139 eleahlntcfkhfvlfvkeFkLidkkelepl 169
                   + +  ln+cf hfv+++ +F+L++kk++epl
    KKY17797.1 228 NRHLELNSCFVHFVTVAMYFDLLAKKDMEPL 258
                   *****************************97 PP

>> KIP1  KIP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.8e-05      0.43      13      38 ..      56      81 ..      48      87 .. 0.85
   2 ?   -2.3   0.1      0.55   4.9e+03      58      72 ..     204     218 ..     200     219 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.8e-05
        KIP1 13 skwLqetlseldekvkemlklieeda 38
                 +wL ++l e+++ +  ml++i+e +
  KKY17797.1 56 GEWLAHQLVEMNRLLTGMLQVIQEVD 81
                68********************8754 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.55
        KIP1  58 lveefyrsyrsLaer 72 
                 ++++++r y  L++ 
  KKY17797.1 204 IIKQMFRCYAHLYHN 218
                 789999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 1718.98
//
Query:       KKY17798.1  [L=499]
Description: putative rna polymerase-associated protein leo1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-32  112.1   0.0    4.7e-32  111.1   0.0    1.5  1  Leo1            Leo1-like protein
  ------ inclusion threshold ------
       0.31   11.5   0.1       0.31   11.5   0.1    6.8  7  EF-1_beta_acid  Eukaryotic elongation factor 1 beta central a


Domain annotation for each model (and alignments):
>> Leo1  Leo1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   0.0   5.2e-36   4.7e-32       1     165 []     112     307 ..     112     307 .. 0.96

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 5.2e-36
        Leo1   1 ylvklPnflsiepkpfdpetfeeeadeeaeeaeeserarkklkaentiRwRykedkgteikeSNArivrWsDGSlsLqlGse...vfdvtrkal..... 91 
                 ylv lP fl+ie+++fdp+t+ +  + ++ +   + +++ ++ a++ + wR+++ +++++ +S Ari+rWsDGSl+Lql+s    +f+v+ ++l     
  KKY17798.1 112 YLVNLPSFLGIESENFDPSTYIPPSQGHTGQVPTDTKFSPFTAASSSLFWRHDP-ADSSKLQSSARIIRWSDGSLTLQLASSpkeQFKVSATTLrqvqp 209
                 6899*******************88888888889********************.889**********************86666************** PP

        Leo1  92 .......................adsntyLvvsheaeevleaqgvitekltfrPa.sleseahrrltravakrhkkkakktklivteeDpekekeeae 165
                                        +d++ yL+++h +++++++++++t++l++ P+ + +++a+ +l++++ak++ +++   ++ + +eDpe++k++ae
  KKY17798.1 210 npkkplpihaqnkaplsshydpnKDAHVYLAAAHTEDSMYRIVAPVTASLKILPTgEQNDHAMMKLQSSLAKAAPTEDPVSSIREIKEDPELAKKRAE 307
                 *******************************************************88899*************9999999***************986 PP

>> EF-1_beta_acid  Eukaryotic elongation factor 1 beta central acidic region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   1.9         2   1.8e+04       4      10 ..      32      37 ..      32      38 .. 0.58
   2 ?   11.5   0.1   3.5e-05      0.31       1      11 [.      40      50 ..      40      56 .. 0.82
   3 ?    1.0   0.3     0.067     6e+02       9      19 ..     297     307 ..     296     308 .. 0.90
   4 ?   -0.3   8.3      0.17   1.5e+03      11      28 .]     309     326 ..     307     326 .. 0.87
   5 ?   -1.0   1.9      0.29   2.6e+03       5      10 ..     380     385 ..     380     394 .. 0.83
   6 ?  -11.5  12.6         2   1.8e+04       3       9 ..     405     411 ..     405     430 .. 0.61
   7 ?   -3.0   1.6       1.2   1.1e+04       4       8 ..     493     497 ..     493     498 .. 0.80

  Alignments for each domain:
  == domain 1  score: -4.7 bits;  conditional E-value: 2
  EF-1_beta_acid  4 SDDEEED 10
                    +DDE  D
      KKY17798.1 32 DDDEG-D 37
                    46665.6 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 3.5e-05
  EF-1_beta_acid  1 LFGSDDEEEDe 11
                    LFGSDDE  De
      KKY17798.1 40 LFGSDDEAGDE 50
                    9******9875 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.067
  EF-1_beta_acid   9 EDeEaerlree 19 
                     ED+E ++ r+e
      KKY17798.1 297 EDPELAKKRAE 307
                     5********98 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.17
  EF-1_beta_acid  11 eEaerlreeRLaaYaaKK 28 
                     +E+e+lr++R  + ++ K
      KKY17798.1 309 AEKEKLRAQRRRENQEQK 326
                     8*********99987776 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.29
  EF-1_beta_acid   5 DDEEED 10 
                     DDE+ED
      KKY17798.1 380 DDEDED 385
                     899988 PP

  == domain 6  score: -11.5 bits;  conditional E-value: 2
  EF-1_beta_acid   3 GSDDEEE 9  
                     GSD+E E
      KKY17798.1 405 GSDEEPE 411
                     6777754 PP

  == domain 7  score: -3.0 bits;  conditional E-value: 1.2
  EF-1_beta_acid   4 SDDEE 8  
                     SD+EE
      KKY17798.1 493 SDEEE 497
                     88888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       980  (0.05466); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3447.20
//
Query:       KKY17799.1  [L=477]
Description: putative sun domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-73  244.6   3.5    1.3e-72  244.2   3.5    1.1  1  SUN       Beta-glucosidase (SUN family)
  ------ inclusion threshold ------
      0.062   12.6   0.0       0.22   10.9   0.0    1.8  2  IN_DBD_C  Integrase DNA binding domain
        5.6    6.4   4.5        1.9    8.0   0.0    1.9  2  LYRIC     Lysine-rich CEACAM1 co-isolated protein family


Domain annotation for each model (and alignments):
>> SUN  Beta-glucosidase (SUN family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.2   3.5   2.1e-76   1.3e-72       6     244 ..      71     319 ..      66     320 .. 0.92

  Alignments for each domain:
  == domain 1  score: 244.2 bits;  conditional E-value: 2.1e-76
         SUN   6 Csefpsdeglvavdalgl.gGwagiqdvkgesqeCkegsyCsyaCppGylktqw.psa..qgatgssvGGLyCnkdGklektnkdskklCekgagkvkv 100
                 C  fp+d+glvav++ +l +Gwa+++d       C++g++C++aCppG++ +qw p+   + ++gs+ GG+yC++dG++++++++ ++ C++g+g+ ++
  KKY17799.1  71 CV-FPDDAGLVAVTPGELnAGWAQSPD-----MPCEPGKWCPFACPPGQVSMQWnPDVtsYIYPGSMEGGMYCEEDGTMSLPFPH-RPHCQDGEGTFHA 162
                 88.**************99********.....79********************987778*************************.9************ PP

         SUN 101 knklsksvavCrTdyPGtEamlipteveagssaelavpdedtyykwkgkktsaqYYvNkaGvsvedaCvWgseskpvGNwaplvlGagkdedgktylsi 199
                  n++s+sva+C+T++PG E+mlipt v+++s++ lavp++++   w+   +++++Y+N++Gvs+edaC+Wg++++p+GNwa++v+Ga+ d  g+ty +i
  KKY17799.1 163 INRCSESVAFCQTVLPGYEDMLIPTPVDSSSRHVLAVPGSSY---WA--GSASHFYINPPGVSTEDACTWGTKENPWGNWAAYVAGANVDVLGTTYTKI 256
                 ******************************************...**..899*********************************************** PP

         SUN 200 fqNp........tskeklnfnvkieaeegdsvsgkCkye...........sgklskg.ggadgCt 244
                 ++Np         ++e+++f++k+++ +gd+++++C+++             ++s g gga++C+
  KKY17799.1 257 GWNPikledatpSRDESPTFGIKLSC-DGDCNGLPCEIDpsvngvnemtgP-DISIGaGGATFCV 319
                 **********99999*********88.599*********888777666532.3333335677776 PP

>> IN_DBD_C  Integrase DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.7e-05      0.22      18      43 ..      59      84 ..      56      87 .. 0.88
   2 ?   -2.2   0.0      0.45   2.7e+03      16      32 ..     304     320 ..     301     328 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.7e-05
                EEEEEEEETTEEEE..E-SS-EEEEE CS
    IN_DBD_C 18 PdpvLikgrGavcvFPqdasdikwvP 43
                P++ L+k rG +cvFP da  + + P
  KKY17799.1 59 PAEELKKKRGEICVFPDDAGLVAVTP 84
                8999**************98777766 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.45
                 EEEEEEEEEETTEEEE. CS
    IN_DBD_C  16 kGPdpvLikgrGavcvF 32 
                  GPd ++ +g    cvF
  KKY17799.1 304 TGPDISIGAGGATFCVF 320
                 69999998888888997 PP

>> LYRIC  Lysine-rich CEACAM1 co-isolated protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00032       1.9      50     106 ..       7      66 ..       5      69 .. 0.88
   2 ?   -1.6   1.9      0.26   1.5e+03     377     394 ..     220     237 ..     205     246 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00032
       LYRIC  50 aaalgLlLllal...Waavcggllkkkkarsaadrgaeeksasekagaakpvkaeepkkk 106
                 +a +g lLll++    a +  g  +++ +  ++++++++++++++ ++++   aee kkk
  KKY17799.1   7 TASTGVLLLLTVfgdIAFAKHGHQHERLRSVHQKHHIAREANKSRSETGHLTPAEELKKK 66 
                 67788888877768889999*******************9999999***********999 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.26
       LYRIC 377 saDpssDwnapaeeWGNy 394
                 s++  + w   ++ WGN+
  KKY17799.1 220 STEDACTWGTKENPWGNW 237
                 788899************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.54
# Mc/sec: 2654.25
//
Query:       KKY17800.1  [L=388]
Description: putative leucine carboxyl methyltransferase superfamily [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-25   89.0   0.0    2.4e-24   86.3   0.0    2.2  2  LCM       Leucine carboxyl methyltransferase


Domain annotation for each model (and alignments):
>> LCM  Leucine carboxyl methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.0   1.3e-28   2.4e-24       5     186 ..      46     247 ..      42     249 .. 0.87
   2 ?   -1.1   0.0     0.084   1.5e+03     117     149 ..     293     324 ..     288     329 .. 0.84

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 1.3e-28
                 HHHHHHHHHHH..HHTSSHTCCCCCCCHHHHHHHHCHCCCHCHHCHGCHCCCCT--HHHHHHHHHHHHHHHHHHHHHH.HCTT.ESEEEEET-TT--HH CS
         LCM   5 aaaralesrra..adglidDplaeslvsaaglellerkadkelekekeeekkekkapelnrgiavRtrffddllkaal.saag.irqvViLGAGlDtra 99 
                 +  +a  sr +  + g++dDp+a  l    +                    + ++ p +nrg++vRt ++d l++ +  s++g ++q++ LGAG Dtr+
  KKY17800.1  46 TDLDASTSRLSavETGYLDDPFAVLLTTGGE--------------------ATRRLPLMNRGTYVRTTAIDRLVDGFCqSQEGqCKQIISLGAGSDTRF 124
                 5556666666336667777777766666663....................34689**********************877778*************** PP

                 HHHHHTT...TEEEEEEE-HHHHHHHHHHHHHSHHHHH..........................EECSEEE--TTS...HHHHHHHHHH....TT-TTS CS
         LCM 100 yRlpwla...glkvfEvDqpevlefKretlkelgaepk..........................aelryvpvDlrd...ddwpeaLaaa....gfdpek 162
                 +Rl++     +l++ E+D+p + + K+++++  + +++                           + +  p+Dlr+    ++ ++L +a     fd+e 
  KKY17800.1 125 FRLKQKYpdiNLVYHELDFPTNASAKIRRIRSGPVRNTinricgwtfdeafvsqvgedptglhaPDYHIHPIDLRSlpgGSLHRELGSAkvleAFDTEI 223
                 *****9999**********************9999999*********************9997657888******7766788888888888889***** PP

                 EEEEEEESSGGGS-HHHHHHHHHH CS
         LCM 163 ptawvaeGvlvYLtpeasdallea 186
                  t++++e++l+YL+p  ++++l+ 
  KKY17800.1 224 STLLISECCLIYLSPSDANSVLSY 247
                 ********************9975 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.084
                 HHHHHHHHHHHHSHHHHHEECSEEE--TTSHHH CS
         LCM 117 evlefKretlkelgaepkaelryvpvDlrdddw 149
                 ++le  +++l+++g  ++++    ++D +   w
  KKY17800.1 293 ATLEAQTRRLEQHGFGVNQDGGIGAADVE-YLW 324
                 789999**********9999999999988.555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 2329.09
//
Query:       KKY17801.1  [L=477]
Description: putative d-lactate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-60  202.2   0.1    1.4e-59  201.7   0.1    1.2  1  FAD-oxidase_C  FAD linked oxidases, C-terminal domain
    4.3e-37  127.0   0.0    8.4e-37  126.0   0.0    1.5  1  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.7   0.1   1.6e-63   1.4e-59       1     245 [.     215     457 ..     215     459 .. 0.98

  Alignments for each domain:
  == domain 1  score: 201.7 bits;  conditional E-value: 1.6e-63
                    --SEEEEEEEEESSHHHHHHHHHHHHHHT---SEEEEE-HHHHHHHHHTS-SS.TTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT-EEEEE CS
  FAD-oxidase_C   1 lpearavalvafpsfeaavkavreiaqagiipaalelmdkkaldlveatkgak.kglpdeeealllvefegddeeeaeeelealveaileatgaad 95 
                    +p++++va v+fp++ +a++a+++++++gi++ a+elmd++++++++++  a+ ++  ++e ++l+++f+g+  e ++ +++  v +i+ + ga +
     KKY17801.1 215 IPQDTSVAIVPFPTVHDAAAAASDLIRSGIQLGAMELMDDVQMQVINQHGSAAvRKRSWKETPTLFLKFSGTT-EGIKVDIK-RVREIVAKRGANN 308
                    599***********************************************9999999****************.99999999.************* PP

                    ..........ETGGGGGGGGHHHHHHHHHCTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHEEEEEEEEEETTEEEEEEEEEEE..--TT--THH CS
  FAD-oxidase_C  96 vlvaqdeaeaealwkaRkaalpylrdallkagvavlseDtsvPvsrladlvrdikalldkyglevvlfgHagdgnlhlyilfdladeaeeeraekl 191
                    +++a++++e   lw+aRk al+++ ++ +  g+  +s+D++vP+s+lad+++  k+   k gl ++++gH+gdgn+h  +++d++de++  ++ k 
     KKY17801.1 309 FVFAKNKQEETDLWAARKEALWTMLSV-RPDGTELWSTDVAVPISKLADIIAISKEESGKLGLFASVIGHVGDGNFHQAVMYDPKDEEQTSSVSKC 403
                    **********************99998.9******************************************************************* PP

                    HHHHHHHHHHTT-----------------------THHHHHHHHHHHH-TT--B CS
  FAD-oxidase_C 192 vdevvdlavelgGsisgEHGvGldkkaylerekgeeglalmrriKaalDPkgiL 245
                    v++++d+a+++ G++sgEHG+Gl kk+ l +e g+e++a m+ +K+a DPk +L
     KKY17801.1 404 VEKMMDRAIDMEGTVSGEHGIGLGKKHCLAKELGPETIAFMQTLKRAVDPKYVL 457
                    **************************************************9776 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.0   9.3e-41   8.4e-37       2     138 ..      43     178 ..      42     179 .. 0.96

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 9.3e-41
                    EEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTC.SCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTC CS
  FAD_binding_4   2 aavvrpeseeevaaalrlaneaglpvlvrGgGssllgqav.atggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgi 96 
                     avv+p+s+eev+ +++++++ ++p++++G+Gss+ g+     +g+ +d+s++n+i+ + e+++ ++v++Gv++ d++++++  gl+l+ +p+   
     KKY17801.1  43 VAVVYPTSTEEVSQIVKICDRFRVPIVPFGAGSSVEGNFFaPLSGISIDFSQMNKIVAFHEDDMDIVVQPGVNWVDMNNQIHGSGLFLPMDPSP-- 136
                    68**********************************999889***********************************************77765.. PP

                    GSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4  97 pgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrl 138
                    ++ +GG+i+tn +G+++ +yG+++d+vl+ ++vladG+++++
     KKY17801.1 137 TAQIGGMISTNCSGTNAMRYGTMKDWVLNITAVLADGSIIKT 178
                    789************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3209.00
//
Query:       KKY17802.1  [L=507]
Description: hypothetical protein UCRPC4_g05435 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-09   36.3   0.1    4.9e-09   36.3   0.1    2.2  2  MMR_HSR1         50S ribosome-binding GTPase
    2.1e-08   33.7   0.1    2.1e-08   33.7   0.1    2.1  2  AIG1             AIG1 family
     0.0027   17.6   0.8     0.0071   16.3   0.0    2.1  2  RsgA_GTPase      RsgA GTPase
     0.0081   15.6   4.9      0.062   12.7   0.0    2.6  2  SRPRB            Signal recognition particle receptor beta su
  ------ inclusion threshold ------
      0.018   15.1   0.0      0.018   15.1   0.0    4.1  3  Dynamin_N        Dynamin family
      0.048   13.4   0.1       0.12   12.1   0.1    1.7  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.088   12.4  11.7       0.14   11.7  11.7    1.3  1  Exonuc_VII_L     Exonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.1   1.9e-12   4.9e-09       2      88 ..      47     143 ..      46     178 .. 0.74
   2 ?   -1.9   1.0       1.3   3.4e+03      84      84 ..     293     293 ..     231     347 .. 0.57

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 1.9e-12
                 EEEEESTTSSHHHHHHHHHTS.TEEESSST.TSSSSEEEEEEEETTEEEEEEECGGC..........SSHHHHHHHHHHHHHHHHCTSEEEEEEETTTT CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkp.gtTrdinegrvklkgkeielvDtpGl..........iegaseekglgkaflaleeadlillvvdasee 88 
                 +++ G + +GKS++i++ ++  + iv++     T++ + +++++++k+i+lvDtpG+          +  ++  ++l  af+++ + + ++++ ++s++
  KKY17802.1  47 IVVTGVTGAGKSSFISKCCEGlNDIVGHSLwSHTQKCTLYTFTHNNKQIHLVDTPGFddskrsgtevL--KEIAEWLLYAFKQNVKLSGMIYLQSLSNS 143
                 799*****************9889998887799**********999**********544333332221..22333588888888888888888877733 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.3
                 E CS
    MMR_HSR1  84 d 84 
                 d
  KKY17802.1 293 D 293
                 3 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.1   8.4e-12   2.1e-08       3     133 ..      47     182 ..      45     238 .. 0.77
   2 ?   -4.9   5.6       5.6   1.4e+04     124     206 ..     281     361 ..     276     368 .. 0.76

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 8.4e-12
                 EEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTCCHHCHHHHHHHHHHHCTT-ESEEE....EE..EETTB CS
        AIG1   3 ivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkiskeivrclllseegihall....lv..lslgr 95 
                 iv+ G tg+GkS+ +    +        s  s t+kc+ ++ t ++k+i+ +DTPg  d++ s  ++ kei + ll++ +  ++ l    +   ls +r
  KKY17802.1  47 IVVTGVTGAGKSSFISKCCEGLNDIVGHSLWSHTQKCTLYTFTHNNKQIHLVDTPGFDDSKRSGTEVLKEIAEWLLYAFK-QNVKLsgmiYLqsLSNSR 144
                 899**********887764333333333334668***************************************9998866.33333332243236777* PP

                 -SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTCC CS
        AIG1  96 fteedekalktlkelFGekilkylivvftrkddledds 133
                 +t      l++ k++ G + ++ +++v t+ d+ +d +
  KKY17802.1 145 MTGSQMVNLNMFKKVTGIHNMDRVVFVTTHWDKTPDSD 182
                 **99999*************************999887 PP

  == domain 2  score: -4.9 bits;  conditional E-value: 5.6
                 EEGGGGTTCCHHHHHHHHH-HHHHHHHHHTTTSEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHCCH CS
        AIG1 124 trkddleddsledylsksspeaLkevlkecgnRvvlfnnktaskeekeeQvkellelveaivkenggkpytnelyekikeeae 206
                  +kd l +++l d  +k ++e ++++ ++ ++  v  +   +skee+ + ++e ++  ++    + +k +++++ ++ +e+++
  KKY17802.1 281 NEKDVLYAQQLMDIQTKLHNE-MERLARNQKDMQVRSDELIKSKEEEIKKAREEMAELRDQAA-ERDKKHSDDVARMREENRK 361
                 578888999999988888877.99999999999999999888888888888876665555433.4468889999888877765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.8e-06    0.0071      95     163 ..      40     105 ..      29     108 .. 0.73
   2 ?   -3.2   0.2       2.6   6.7e+03      65      99 ..     266     300 ..     245     309 .. 0.58

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.8e-06
                  HHCTTSEEEEECSTTSSHHHHHHHHCTT-----S------------..--SEEEEEETTTEEEESS-SSSS CS
  RsgA_GTPase  95 ellkdktsvlvGqSGvGKStLinallpelelktgevseklgrGkhT..TtavellelaegglliDtPGfre 163
                   + +d ++v+ G +G+GKS++i +  + l+  +g+         hT   t  ++ + +++  l+DtPGf  
   KKY17802.1  40 FNPDDAFIVVTGVTGAGKSSFISKCCEGLNDIVGHSLW-----SHTqkCTLYTFTHNNKQIHLVDTPGFDD 105
                  55567899******************997766665332.....3331134455666666889*******75 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.6
                  HHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  65 leelkeelealgyevllvsaktkegleelkellkd 99 
                   +e+ke  ++l+ ++   ++   ++l +++++l++
   KKY17802.1 266 RREMKEMETQLNEALNEKDVLYAQQLMDIQTKLHN 300
                  34444444444444444444455555555555555 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   2.4e-05     0.062       6      61 ..      47     105 ..      43     125 .. 0.82
   2 ?    1.4   3.6     0.071   1.8e+02     118     155 ..     279     316 ..     257     363 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.4e-05
                 EEEE-STTSSHHHHHHHHHHS...S---B---SS-EEETTG...GGTT-SEEEETT-GC CS
       SRPRB   6 vllvGlsdsGKTslftrLttd...svkktvtSqessaalkvksekgskltliDfPGhek 61 
                 +++ G++ +GK s++ +  ++    v ++  S  ++++l + ++++++++l+D PG + 
  KKY17802.1  47 IVVTGVTGAGKSSFISKCCEGlndIVGHSLWSHTQKCTLYTFTHNNKQIHLVDTPGFDD 105
                 7789*************98876668999*****6666666669*************875 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.071
                 EEE-TTSTT---HHHHHHHHHHHHHHHHHCHHHHHH-- CS
       SRPRB 118 ACnKqelflakspklikdaLEkElnkiierrskalkel 155
                 A n +++  a++   i+ +L +E++++ ++++      
  KKY17802.1 279 ALNEKDVLYAQQLMDIQTKLHNEMERLARNQKDMQVRS 316
                 7799999******************9987765544433 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   1.0    0.0031         8       1      15 [.      47      61 ..      47      85 .. 0.79
   2 ?   15.1   0.0   6.9e-06     0.018      91     126 ..      83     118 ..      62     132 .. 0.86
   3 ?   -5.1   9.3         7   1.8e+04      50      92 ..     309     354 ..     209     370 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0031
                EEEEEBTTTTHHHHH CS
   Dynamin_N  1 iavvGsqSsGKSSvl 15
                i+v G + +GKSS++
  KKY17802.1 47 IVVTGVTGAGKSSFI 61
                89************7 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 6.9e-06
                 EEEEEEETTS-SEEEEE---B-SSSGTTSHHHHHHH CS
   Dynamin_N  91 illkilsllvkgltlvDlPGldsvnkrdqelvkeyi 126
                  +l+ ++ ++k++ lvD+PG+d+++   +e++ke++
  KKY17802.1  83 CTLYTFTHNNKQIHLVDTPGFDDSKRSGTEVLKEIA 118
                 578999999********************9999876 PP

  == domain 3  score: -5.1 bits;  conditional E-value: 7
                 ...SSEEEE...T-EB--CHHHHHHHHHHHHHHHTSSSS--SS-EE CS
   Dynamin_N  50 avkeelkek...ekkledfsevreeieketekiagankgiskkvil 92 
                 + + +++++   ++k+e++++ ree+ + ++++a++ k+ s++v  
  KKY17802.1 309 QKDMQVRSDeliKSKEEEIKKAREEMAELRDQAAERDKKHSDDVAR 354
                 2222333335567777777777777777777777777776666554 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   4.7e-05      0.12       1      42 [.      47      93 ..      47     111 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.7e-05
  Viral_helicase1  1 ivvhGvpGcGKStlirkllrts.....liltvnrptaelltegkpkl 42
                     ivv Gv G+GKS+ i k ++       ++l ++++ + l+t  ++++
       KKY17802.1 47 IVVTGVTGAGKSSFISKCCEGLndivgHSLWSHTQKCTLYTFTHNNK 93
                     79**************9986657778888888888888888877444 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  11.7   5.3e-05      0.14     119     241 ..     220     369 ..     217     428 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.3e-05
  Exonuc_VII_L 119 iaDfvAdlrapTPtaaAelvvpdkael....................eeqleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldel 195
                   i+D v+      P+   e++v d ++l                    +++++e+e +l++a++++    +q+l  ++++l++  e+l+r+++ ++  
    KKY17802.1 220 IVDKVSSNAHFMPSLQKEMAV-DDKQLdetdagrvlnaeineakeksRREMKEMETQLNEALNEKDVLYAQQLMDIQTKLHNEMERLARNQKDMQVR 315
                   556666666666666666666.333334555566665555555555577778888888888877777778888899999998888999999999999 PP

  Exonuc_VII_L 196 eerleralkkqlkkkrerleelkerlkekleekkerlkklkerle........l 241
                   +++l ++ ++++kk+re++ el+++  e+ +++++++++++e+ +        +
    KKY17802.1 316 SDELIKSKEEEIKKAREEMAELRDQAAERDKKHSDDVARMREENRkgeatmkaE 369
                   999999999999999999999998885455555555555544444333333221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2815  (0.157008); expected 358.6 (0.02)
Passed bias filter:                      653  (0.0364214); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.53
# Mc/sec: 2874.75
//
Query:       KKY17803.1  [L=597]
Description: putative ap-2 adaptor complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-49  168.2   1.1    3.1e-49  166.6   1.1    1.8  1  Clat_adaptor_s  Clathrin adaptor complex small chain
    7.4e-09   35.7   0.0    7.4e-09   35.7   0.0    2.1  2  MMR_HSR1        50S ribosome-binding GTPase
    6.6e-05   22.3   0.2    6.6e-05   22.3   0.2    2.3  1  AIG1            AIG1 family
    0.00068   19.6   0.3    0.00068   19.6   0.3    2.3  2  RsgA_GTPase     RsgA GTPase
     0.0017   18.1   0.1     0.0055   16.5   0.1    1.6  1  AAA_15          AAA ATPase domain
     0.0097   16.4   0.0     0.0097   16.4   0.0    3.0  1  ABC_tran        ABC transporter
       0.01   15.4   0.3       0.01   15.4   0.3    1.9  2  FeoB_N          Ferrous iron transport protein B
  ------ inclusion threshold ------
      0.044   11.7  13.6      0.058   11.3  13.6    1.1  1  V_ATPase_I      V-type ATPase 116kDa subunit family
      0.072   12.8   0.1       0.17   11.7   0.1    1.5  1  AAA_29          P-loop containing region of AAA domain
      0.095   12.0   0.1      0.095   12.0   0.1    2.1  1  Gtr1_RagA       Gtr1/RagA G protein conserved region
          1    8.9  25.1       0.22   11.1  21.6    1.7  2  Exonuc_VII_L    Exonuclease VII, large subunit
        1.8    8.6   0.0       0.39   10.7   1.1    4.0  2  Dynamin_N       Dynamin family
        3.8    5.6  23.0        5.4    5.2  23.0    1.1  1  PAT1            Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.6   1.1   2.2e-52   3.1e-49      12     141 ..     465     596 ..     460     597 .] 0.97

  Alignments for each domain:
  == domain 1  score: 166.6 bits;  conditional E-value: 2.2e-52
                     S-EEEEEESSSS-CHHHHHHHHHHHHHHHTT-SSS.-SEEEETT.EEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTS-SHHHHH CS
  Clat_adaptor_s  12 gkvrlakfytavddkkkqklieevyelvsaRdskl.sniveled.lkviYkryasLYFvvivdeqeneliilelihlfvesLdkyfgnVceldlv 104
                     gk+rlak+y +++d++k kl  ev++l++ Rd+k+ sn+ve++  +k++Y+rya+L+F+v+vd ++nel++le+ih fve+Ld++fgnVceldlv
      KKY17803.1 465 GKTRLAKWYAPYNDEEKVKLKGEVHRLIAPRDQKYqSNFVEFRRsTKIVYRRYAGLFFCVCVDANDNELAYLEAIHFFVEVLDQFFGNVCELDLV 559
                     99*******************************988******998************************************************** PP

                     HCHHHHHHHHHCCEETTEES---HHHHHHCHHHHHHH CS
  Clat_adaptor_s 105 fnfekvylildEivsgGeiletskkevlkrvelldkl 141
                     fnf+kvy+ildE++ +Gei etsk+ vl r+e ldkl
      KKY17803.1 560 FNFYKVYAILDEVFLAGEIEETSKQVVLTRLEHLDKL 596
                     **********************************987 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   5.4e-12   7.4e-09       2      63 ..      69     132 ..      68     192 .. 0.78
   2 ?   -2.4   0.7       3.7   5.1e+03     103     103 ..     268     268 ..     217     341 .. 0.64

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 5.4e-12
                 EEEEESTTSSHHHHHHHHHTS.TEEESSST.TSSSSEEEEEEEETTEEEEEEECGGCSS..HHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkp.gtTrdinegrvklkgkeielvDtpGlie..gasee 63 
                 va++G++ +GKS++i+a tg+ ++ v+++    T  +  ++ k++g +++lvDtpG+ +  +  +e
  KKY17803.1  69 VALMGMTGSGKSSFIKAVTGNgNVVVGNTLeSETAVVSSFTCKIQGISFVLVDTPGFNDtyR--SE 132
                 89******************98999998875889999*******************532221..11 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.7
                 H CS
    MMR_HSR1 103 e 103
                 e
  KKY17803.1 268 E 268
                 0 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.2   4.8e-08   6.6e-05       3      80 ..      69     146 ..      67     160 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 4.8e-08
                 EEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTCCHHCHHHHHHHHHHHC CS
        AIG1   3 ivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkiskeivrcllls 80 
                 + l+G tg+GkS+ + ++ g+       + +s t  +++ + + +g + + +DTPg  d+  s+ +i +ei+  l+++
  KKY17803.1  69 VALMGMTGSGKSSFIKAVTGNGNVVVGNTLESETAVVSSFTCKIQGISFVLVDTPGFNDTYRSEREILNEITTWLSMT 146
                 569**********99999999988888888888999999999*****************************9887776 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.3   4.9e-07   0.00068      98     163 ..      65     127 ..      49     129 .. 0.76
   2 ?   -2.9   1.4       3.9   5.4e+03      58      99 ..     291     329 ..     279     337 .. 0.55

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.9e-07
                  TTSEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETT...TEEEESS-SSSS CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelae...gglliDtPGfre 163
                  +d +++l+G +G GKS++i+a++++ ++ +g++ e+      T   v+ + ++    + +l+DtPGf+ 
   KKY17803.1  65 DDVVVALMGMTGSGKSSFIKAVTGNGNVVVGNTLESE-----TA-VVSSFTCKIqgiSFVLVDTPGFND 127
                  457899*******************9****9998863.....33.3333333331123579******96 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.9
                  G--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  58 lleeeeeleelkeelealgyevllvsaktkegleelkellkd 99 
                  l+e+++   ++k++ e+l+ e   + +++k + e+l+++l++
   KKY17803.1 291 LTEKMR---QQKAAQEKLEREQRQLFEEQKLQQEKLQKALQQ 329
                  444444...444444444444444444445555666665554 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1     4e-06    0.0055      25     251 ..      68     362 ..      60     379 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4e-06
      AAA_15  25 ltvliGkNnsGKSsilealdlFlnnkekkn.................................kkvikiekedleifeniseskdikIdvef....... 83 
                 +  l G  +sGKSs+++a      n    n                                 +      ++ ++ +++i ++++ ++ +++       
  KKY17803.1  68 VVALMGMTGSGKSSFIKAV---TGN---GNvvvgntlesetavvssftckiqgisfvlvdtpgF------NDTYRSEREILNEITTWLSMTYtegrlln 154
                 5567788889999999998...222...246677777778888888889998875544444442......45666777888888888888889999999 PP

      AAA_15  84 ........................................................aekekakeyektlkskekkkadlllkkkesdlkktikdkklkl 126
                                                                                   +  ++   + +++ll+  ++ ++ +  +k+l +
  KKY17803.1 155 gvvylhpishcrvegssflslrmlmklldrrigqareqelcksselwgymrskgaqV---------VQIHNYVVQAKEILLEIAQKGTVVLDIQKELVD 244
                 999999999999999999999998888888888776666665554444432222210.........222222222222333333333333333333333 PP

      AAA_15 127 kknelsdekisvekkks.kkelpkekeeklekekeelkidkedlkklikkleeslkkeeelknvlksaiiklllisakRnvsdedsekkssllgklkek 224
                 +k+e++d +         k  ++++ +  +e e+e      + ++kl +k  e ++k        ++++ + +l  ++R+  +e++ ++++l  +l+++
  KKY17803.1 245 EKKEVKDTN-------VgKLADYELAKVQREAEQEAQHARRKAARKLAQKEAELTEKMR------QQKAAQEKLEREQRQLFEEQKLQQEKLQKALQQE 330
                 333333333.......2455555555666666666666666666666665444444444......7777778888888888888888888888888888 PP

      AAA_15 225 ileealqekl............eeelteklkeiqeklke 251
                  ++ al+e++                     +  e+ k+
  KKY17803.1 331 AKRRALEEQQkkdrleaqmrehL-------HRQMEEKKQ 362
                 88888777777666643333332.......333333222 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     7e-06    0.0097      13      41 ..      68      96 ..      64     165 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7e-06
                EEEEEESTTSSHHHHHHHHTTSS--SEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkpteGe 41
                +va++G +G+GKS+++k+++g+ +   G+
  KKY17803.1 68 VVALMGMTGSGKSSFIKAVTGNGNVVVGN 96
                79******************997776665 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   7.2e-06      0.01       2      59 ..      68     127 ..      67     142 .. 0.81
   2 ?   -3.0   0.2       3.2   4.5e+03     101     146 ..     225     270 ..     221     278 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.2e-06
                 EEEEEESTTSSHHHHHHHHHTT.SEEEEE.STTSSSEEEEEEEEETTEEEEEEE----SS CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltga.kqkvgN.wpGvtvekkegklklkgkeveivDlPGiYs 59 
                  val+G   +Gk++++ a+tg  +  vgN     t   ++ ++k++g ++ +vD PG  +
  KKY17803.1  68 VVALMGMTGSGKSSFIKAVTGNgNVVVGNtLESETAVVSSFTCKIQGISFVLVDTPGFND 127
                 699*****************98356789934567777888888999***********754 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.2
                 HHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTT CS
      FeoB_N 101 llelgvpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkk 146
                 lle+ ++  ++l++  e+ +++ e+  +++ +  + +  k++ + +
  KKY17803.1 225 LLEIAQKGTVVLDIQKELVDEKKEVKDTNVGKLADYELAKVQREAE 270
                 6788888899999999998888888888877777776666655555 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  13.6   4.2e-05     0.058      59     155 ..     260     366 ..     224     435 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.2e-05
  V_ATPase_I  59 a.........eesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavl.ekakefleeeeeeeeeeeseeeeeekeeeeeeeseeee 147
                 +         e++ +++++k   +l ++  +l+e+++++++ +ekl++e+++l e++++  ek ++ l++e+++++ ee++++++ +++ +e+ +++ e
  KKY17803.1 260 YelakvqreaEQEAQHARRKAARKLAQKEAELTEKMRQQKAAQEKLEREQRQLFEEQKLQqEKLQKALQQEAKRRALEEQQKKDRLEAQMREHLHRQME 358
                 033444444477888888999999******************************999997356788888774444433333333333333322223333 PP

  V_ATPase_I 148 eeelleee 155
                 e+++leee
  KKY17803.1 359 EKKQLEEE 366
                 33333322 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00012      0.17      23      43 ..      66      87 ..      53      97 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
      AAA_29 23 g.atlltGpsGsGKSTllDAiq 43
                + ++ l+G +GsGKS+++ A++
  KKY17803.1 66 DvVVALMGMTGSGKSSFIKAVT 87
                257899************9975 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   6.9e-05     0.095       2      63 ..      69     130 ..      68     141 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.9e-05
   Gtr1_RagA   2 vLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafve 63 
                 v LmG  gsGK+s  + +  n       +l++ + v  s  +  + + + l+D +G ++   
  KKY17803.1  69 VALMGMTGSGKSSFIKAVTGNGNVVVGNTLESETAVVSSFTCKIQGISFVLVDTPGFNDTYR 130
                 569*****************999999999999999999999999************887665 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       3.5   4.9e+03      55      77 ..      47      69 ..      46      71 .. 0.87
   2 ?   11.1  21.6   0.00016      0.22     133     256 ..     279     388 ..     199     420 .. 0.55

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.5
  Exonuc_VII_L 55 eaaaeiikalekanalkeaDvli 77
                  +a++ i++ +++a +++ +Dv++
    KKY17803.1 47 NAQNGIANRISAAPKNNGDDVVV 69
                  79999*****9999999999998 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00016
  Exonuc_VII_L 133 aaAelvvpdkaeleeqleelerrlekaikrlleekkqrleklasrlk.speellerkrqrldeleerleralkkqlkkkrerleelkerlkekleek 228
                   +aA+++++++ael+e+++                   + ++++++l+ ++++l+e+++ + ++l++ l+++ k+++ +++++ ++l+++++e+l+++
    KKY17803.1 279 KAARKLAQKEAELTEKMR-------------------QQKAAQEKLErEQRQLFEEQKLQQEKLQKALQQEAKRRALEEQQKKDRLEAQMREHLHRQ 356
                   233344434433322222...................222223333323444444445555555555555555555555555555555553222222 PP

  Exonuc_VII_L 229 kerlkklkerle....lleekkerleeleekl 256
                    e+ k+l+e+ +    +l+ +++rl++  ++ 
    KKY17803.1 357 MEEKKQLEEENRrrerQLRLEEDRLRRSNNRA 388
                   22222222221112232222222222222222 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.1   0.00029      0.39       1      30 [.      69      98 ..      69     107 .. 0.82
   2 ?    8.6   0.0    0.0013       1.8      96     125 ..     110     139 ..      95     149 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00029
                EEEEEBTTTTHHHHHHHHHTS--S---SSS CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnp 30
                +a++G++ sGKSS++ a++g    ++g+++
  KKY17803.1 69 VALMGMTGSGKSSFIKAVTGNGNVVVGNTL 98
                7999***************99877777665 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0013
                 EETTS-SEEEEE---B-SSSGTTSHHHHHH CS
   Dynamin_N  96 lsllvkgltlvDlPGldsvnkrdqelvkey 125
                 ++++    +lvD+PG++++   + e+++e+
  KKY17803.1 110 CKIQGISFVLVDTPGFNDTYRSEREILNEI 139
                 556666789**********99998777664 PP

>> PAT1  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  23.0    0.0039       5.4     155     370 ..     192     405 ..     186     418 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0039
        PAT1 155 pdlqvdaslWgvaekkaaasaaapevaaaaasla.sasrkvlsleEvEaamraqakkkaaqaaaaaaasqqPaaeqaeqaeaaaqaaka.eqaqqapes 251
                 ++l  +++lWg + +k a+  + ++   +a+++  + ++k   + ++ +++  ++k+ + ++  + a  +  + ++++++ea++ ++ka ++  q++  
  KKY17803.1 192 QELCKSSELWGYMRSKGAQVVQIHNYVVQAKEILlEIAQKGTVVLDIQKELVDEKKEVKDTNVGKLADYELAKVQREAEQEAQHARRKAaRKLAQKE-A 289
                 67888999***99888888877755444444443488899988999999998888888877776666554444333333333332322212222222.2 PP

        PAT1 252 akeqqqeqeqaaqaqqkkeqgk..pvtilqrpqskqakpaepsasseaqeakqqappakvqptqilqnpnrlaarlelsqkeqaaaqaapeqeakrqqs 348
                 + +++++q++aaq++ ++eq++  + + lq+++ ++a ++e+  + +a e++q++   ++q ++ l++    +++l   ++e+ +++ + + e++r ++
  KKY17803.1 290 ELTEKMRQQKAAQEKLEREQRQlfEEQKLQQEKLQKALQQEA--KRRALEEQQKKDRLEAQMREHLHRQMEEKKQL---EEENRRRERQLRLEEDRLRR 383
                 223333333333333333333312444444444433332222..22222233344444445555555544443333...44444455555666778888 PP

        PAT1 349 sagkqaqiithpqqlaqlseee 370
                 s ++++++i  p+ql++l   +
  KKY17803.1 384 SNNRARRLILLPTQLSTLERAQ 405
                 8889999999999999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3519  (0.196274); expected 358.6 (0.02)
Passed bias filter:                      779  (0.0434492); expected 358.6 (0.02)
Passed Vit filter:                       238  (0.0132746); expected 17.9 (0.001)
Passed Fwd filter:                        47  (0.00262145); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.20u 0.44s 00:00:01.64 Elapsed: 00:00:00.61
# Mc/sec: 2970.64
//
Query:       KKY17804.1  [L=1473]
Description: putative ring zinc finger protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-51  173.0   3.2    8.8e-51  172.1   3.2    1.5  1  Ist1      Regulator of Vps4 activity in the MVB pathway
  ------ inclusion threshold ------
        2.7    8.2   6.2        8.3    6.6   0.3    2.9  2  COG5      Golgi transport complex subunit 5


Domain annotation for each model (and alignments):
>> Ist1  Regulator of Vps4 activity in the MVB pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.1   3.2   9.8e-55   8.8e-51       1     164 []    1145    1322 ..    1145    1322 .. 0.98

  Alignments for each domain:
  == domain 1  score: 172.1 bits;  conditional E-value: 9.8e-55
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT--S.............SSSS CS
        Ist1    1 KtqlklaiqrlkllqkkkealakqarrdiaqlLengkeekArirveqliredillelleilelycelllarlsllekqke.............ldee 84  
                  K+ql+l+i+rl+ +qkk++al  +arr +a+lL++++e +Arirve++i+ di +e++eilely elllar +ll+ +++             +d++
  KKY17804.1 1145 KSQLRLVIERLRNAQKKDNALSVAARRGMATLLTENREASARIRVESIIQTDICVEVMEILELYAELLLARAGLLDMREKeaknhkdgeeavhIDSG 1241
                  89**************************************************************************8555699************** PP

                  HHHHHHHHHHHHHH-.TTTTTHHHHHHHHHTTS-HHHHHHHHTT-T.T--HHHHHHHS-----HHHHHHHHHHHHHHHT-S CS
        Ist1   85 lkEAvssliyAaprv.selkELkelrdllaekyGkefakaavenkdngVnekvvkklsvktpskelvekylkeIAkeynve 164 
                  l+EA++++iyAapr+  e++EL+++r+llaek+Gkefa++a+en+d +V+ekvvkkl+v++p + lve yl+eIA++y+v+
  KKY17804.1 1242 LEEAAAAMIYAAPRLqREIRELSMVRNLLAEKWGKEFAARANENRDGIVPEKVVKKLKVEPPGDRLVELYLTEIARTYGVD 1322
                  ***************99*************************************************************996 PP

>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   1.2     0.013   1.1e+02      74     123 ..     278     328 ..     251     330 .. 0.80
   2 ?    6.6   0.3   0.00092       8.3      26      80 ..     436     490 ..     425     493 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.013
                 XXXXXXXX.XXXXXXXXXXX-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        COG5  74 lselkssl.esLsasyerlkskvlepyeeaeklqsalkrlhqtldLlrral 123
                   +l +++ e+L++s +  +s +    ++++k ++   ++h+ +dLlr++l
  KKY17804.1 278 ARTLAQQMqENLQKSGSATQSSIEIARQQISKANEDSLSIHTVVDLLRDTL 328
                 44555555357999999999****************************975 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.00092
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5  26 dteldlstplkrlnydiqeldkrlrqlitsnhleLlehlskskslssvlselkss 80 
                 +++ld+ t+    + d+q++++++ +li++ h  L + + ++ks +++ ++ ++s
  KKY17804.1 436 NEKLDVRTSNTAWSMDTQDVEEEMSRLISEGHHLLSNLIIRQKSSEALKHTFDTS 490
                 5799***************************999988888888888888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.52
# Mc/sec: 8476.84
//
Query:       KKY17805.1  [L=820]
Description: putative dna repair helicase rad3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-56  190.3   0.2    3.9e-56  189.5   0.2    1.4  1  DEAD_2        DEAD_2
    1.3e-46  158.7   1.4    5.1e-42  143.7   0.2    2.5  2  HBB           Helical and beta-bridge domain
    1.6e-43  148.8   0.0    4.7e-43  147.3   0.0    1.8  2  Helicase_C_2  Helicase C-terminal domain
    0.00011   22.2   0.0      0.007   16.4   0.0    2.3  2  ResIII        Type III restriction enzyme, res subunit
    0.00049   19.9   0.0      0.076   12.8   0.0    2.5  2  DEAD          DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.045   12.5   0.0       0.87    8.2   0.0    2.1  1  SNF2_N        SNF2 family N-terminal domain
      0.081   12.2   0.0        7.1    5.8   0.0    2.2  2  DUF2075       Uncharacterized conserved protein (DUF2075)
        2.2    8.2   6.7       0.72    9.8   1.2    2.4  2  Remorin_C     Remorin, C-terminal region


Domain annotation for each model (and alignments):
>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.5   0.2   1.7e-59   3.9e-56       1     176 []      71     255 ..      71     255 .. 0.96

  Alignments for each domain:
  == domain 1  score: 189.5 bits;  conditional E-value: 1.7e-59
                 EEESSHHHHHHHHHHHHHHHHHCHH....HS---EEEE--CCCC-SCHHCCCHHCCCCHHHHHHHHHCCHHCCH......TTTTTT-SCCCCHHHHHHH CS
      DEAD_2   1 ycsRThsqleqvvkelkklesykkk....kekvkvviLgSRknlCineevkkekkekavneaCkelkkkkaeek......eekCsffenleelkklkkl 89 
                 ycsRT+s++e++++elk+l++y+++     e+++ ++L+SRknlC++++vk+ek+++ v+++C++l++  ++ek      +  C +++nl +l + ++l
  KKY17805.1  71 YCSRTMSEIEKALAELKNLMKYRAEqlgyVEDFRGLGLTSRKNLCLHPSVKREKSGAVVDARCRSLTAGFVKEKkergedVDLCIYHDNL-DLLEPHNL 168
                 9**********************98788889**************************************99998899999899*****99.777789** PP

                 HHHC---CHHHHHHHHHCT--HHHHHHHHHCCTSEEEEEHHHHTSCCCHHHHHT..GCGCEEEECTCCCHHHHHHHCC-EEEECHHH CS
      DEAD_2  90 lleevvdiedlvelgeklklCPYylsrelledadiiilpYqyLldekireslkgislknsivilDEAhNiedvceeaasveiseesl 176
                 ++ +v++++ l ++ge++k CPY+++r++++++++ii++Y+yLld+ki+e++++  +k++iv++DEAhNi++vc+e++s++++e+sl
  KKY17805.1 169 VPPGVFTLDGLIKYGEQHKQCPYFSARRMMSFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNIDNVCIESLSIDLTEDSL 255
                 *****************************************************7779**************************9886 PP

>> HBB  Helical and beta-bridge domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.7   0.2   2.3e-45   5.1e-42       2     190 .]     269     412 ..     268     412 .. 0.98
   2 !   13.7   0.1   1.7e-05     0.038     118     169 ..     429     482 ..     424     488 .. 0.82

  Alignments for each domain:
  == domain 1  score: 143.7 bits;  conditional E-value: 2.3e-45
                 CHCHCCCCHHCCCCCCCHHHHHHHHHCCCCHHHHSTTTECCHCHHHHHCHCHHHCHHHHHHHHHHHHHHHHHHHCCHHCCCTCC-SHHHHHHHHHHHHH CS
         HBB   2 ikeaketdepklqdeysrLvegLreaeeereeeyvleeepilpdeileeavpglirsaehflsllkrlveygkarreekieksesPrsflsrlaeflla 100
                 i+e+k++d++klq+ey++LvegLr a e+r+e+ ++++ p lpd++l+eavpg+ir+aehf ++lkr++ey+k+r+++  +++e+P sfls+l+     
  KKY17805.1 269 IEEMKASDSEKLQNEYQKLVEGLRGADEARAEDAFMSN-PALPDDLLKEAVPGNIRRAEHFMAFLKRFIEYLKTRMKVLYVIQETPPSFLSHLK----- 361
                 89************************************.*******************************************************..... PP

                 HHTS.TTTEEEEEE.STT.EECCCCS-TCCHHHHHHHCHCCCCCCTS-SSHHHHHHHHT....EEE.S..S.GGHCCCCCCCCCSHTCCC CS
         HBB 101 wlssdeedYvrlvskeegesLeavcldPskalrflkerlssllmsgtltpleeysdiiGleaklkkfpspfpkEnlivlfatdVsTkyke 190
                                      e+++++ +k+lrf++erl+sl+++++lt++e+y+++                 +++++fat+ +T++++
  KKY17805.1 362 ---------------------ELTFIE-RKPLRFCAERLTSLVRTLELTNIEDYQPL-----------------QEVATFATLAATYDTG 412
                 .....................******.*****************************.................************9875 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.7e-05
                 T.EECCCCS-TCCHHHHHHHCHCC.CCCCTS-SSHHHHHHHHT.....EEE.S. CS
         HBB 118 gesLeavcldPskalrflkerlss.llmsgtltpleeysdiiGle.aklkkfps 169
                 ++ L+ +cld s a++++ er ss +++sgt++pl+ y +++ +     + +p 
  KKY17805.1 429 NPILHFTCLDASIAIKPVFERFSSvIITSGTISPLDMYPKMLNFStVLQESYPM 482
                 78999*****9999**9999876527899***********98888445566775 PP

>> Helicase_C_2  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.5   7.8e+03      39      58 ..     267     286 ..     214     295 .. 0.54
   2 !  147.3   0.0   2.1e-46   4.7e-43       1     170 [.     523     696 ..     523     697 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.5
  Helicase_C_2  39 eifveekeesrekvleeyke 58 
                   + ++e k++++ek+ +ey++
    KKY17805.1 267 RKIEEMKASDSEKLQNEYQK 286
                   23333366667777666665 PP

  == domain 2  score: 147.3 bits;  conditional E-value: 2.1e-46
  Helicase_C_2   1 llellevvpggvlvffpSyklleevverlkeeleskki....eifvee.keesrekvleeykek..kkkgaillavcrGklsEGidfsddllravii 90 
                   ll++++++p+g++vffpSy ++e++++ ++  +  ++i     i+ve+ ++++++  le+y+++  +++gaill+v+rGk+sEGidf  +++r vi+
    KKY17805.1 523 LLDFSRITPDGIVVFFPSYLYMESIISMWQGAGILDQIwnykLILVETpDAQETSLALETYRTAccNGRGAILLCVARGKVSEGIDFDHHYGRTVIC 619
                   578999*************************98544444444777777688899999******667******************************* PP

  Helicase_C_2  91 vglPfpnpkdpeveakreyldekgkknsgkewylpealravnQaiGRliRhkdDygaivllDeRfakeeireklpkwlre 170
                   +g Pf+ +++  ++a+ e+l+e+ +  +  ++   +a+r   Q++GR+iR kdDyg++vl D+Rf++++  ++lp+w++e
    KKY17805.1 620 MGAPFQYTESRILKARLEFLRENYR-IKETDFLSFDAMRHAAQCLGRVIRGKDDYGIMVLADKRFQRKR--NQLPRWISE 696
                   *************************.99***************************************98..88****986 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.1e-06     0.007      23      79 ..      34      91 ..      16     153 .. 0.79
   2 ?    3.5   0.0     0.029        65     106     145 ..     203     239 ..     175     272 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.1e-06
                TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSH.HHHHHHHHHGGGGTG CS
      ResIII 23 rdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprk.slleqtleefkkfls 79
                   + +++m+ GtGKT+ +++li ++++ ++e + l+ + r+ s +e++l e+k++++
  KKY17805.1 34 AGGHCVLEMPSGTGKTVSLLSLIVAYQQFYPEHRKLIYCSRTmSEIEKALAELKNLMK 91
                455889************************9997777666654677777777777665 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.029
                 EEEEEHHHHHHTH........HHHTTT-S..EEEEETGGGTT CS
      ResIII 106 ilvttiqsldadseeeeeeseellrdrfd..viiiDEaHrlg 145
                 +++ +++ l  ++       e+ +++ ++  ++++DEaH++ 
  KKY17805.1 203 VIIYSYHYLLDPK-----IAERVSKELSKdcIVVFDEAHNID 239
                 5555555555555.....2333333333234999*****975 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   3.4e-05     0.076      11      74 ..      32      93 ..      22     132 .. 0.81
   2 ?    4.4   0.0     0.013        28      98     135 ..     201     240 ..     179     267 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.4e-05
                HHTTCEEEEEESTTSSHHHH..HHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTS CS
                xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 11 ilgggdvlvaaeTGsGKTla..flipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyi 74
                +  gg+++++++ G+GKT     li ++q++y     ++ k ++ + t + +e+ l +lk+++ky 
  KKY17805.1 32 LEAGGHCVLEMPSGTGKTVSllSLIVAYQQFY----PEHRKLIYCSRTMSEIEKALAELKNLMKYR 93
                44789*************98223455556665....78899***********************83 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.013
                 CSEEEEEHHHHHHHH..HCTSSHCTTEEEEEEETHHHHHH CS
                 xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddll..stgklnlsqvrflVlDEadrlld 135
                 +++++     l+d    ++ + +ls+  ++V+DEa+++ +
  KKY17805.1 201 CNVIIYSYHYLLDPKiaERVSKELSKDCIVVFDEAHNIDN 240
                 6667777777777333455556699999********9876 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00039      0.87     127     191 ..     154     240 ..      33     260 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00039
                 --SSHHHH........................-----------------EEEE-HHHHHHHT......TTS-S-S-SE.EEES-GGGT-- CS
                 xxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
      SNF2_N 127 lvyggqkk........................mkkkntkvapklladydvvittYdvlsreaelqkkrsvlkqvewkr.vvlDEghtlkn 191
                 ++y+++                           k+   + a++++   +v+i +Y++l   +       v k+++ ++ vv DE+h++ n
  KKY17805.1 154 CIYHDNLDllephnlvppgvftldglikygeqHKQCPYFSARRMMSFCNVIIYSYHYLLDPK---IAERVSKELSKDCiVVFDEAHNIDN 240
                 44444433556666666666666666666554555666788899999999999999999666...33334444555551567****9987 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0032       7.1      10      53 ..      44      88 ..      38     105 .. 0.69
   2 ?    4.0   0.0     0.011        24      83     119 ..     221     268 ..     194     285 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0032
     DUF2075 10 aGtGKtvvllnllael.eddeeertavylsvNhplvlvlrealak 53
                +GtGKtv ll+l++++ +   e+r+ +y s+  +++++   +l++
  KKY17805.1 44 SGTGKTVSLLSLIVAYqQFYPEHRKLIYCSRTMSEIEKALAELKN 88
                6***********999944555666666666666666555555543 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.011
     DUF2075  83 kkeepkedvvivDEAhrllt...........ksdqaekqseenqlkel 119
                 +ke  k ++v++DEAh + +           + + ++ +++ n+l++ 
  KKY17805.1 221 SKELSKDCIVVFDEAHNIDNvcieslsidltEDSLRKATRGANNLERK 268
                 566778899*******99887777777777655556666666666655 PP

>> Remorin_C  Remorin, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.2   0.00032      0.72      38      69 ..     256     287 ..     252     303 .. 0.80
   2 ?    0.4   0.4      0.26   5.9e+02       8      27 ..     737     756 ..     730     767 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00032
   Remorin_C  38 akaeaelrkleeklEkkrakaleklknklari 69 
                 +ka++  ++le+k+E+++a+  ekl+n+ ++ 
  KKY17805.1 256 RKATRGANNLERKIEEMKASDSEKLQNEYQKL 287
                 58888999*******************99875 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.26
   Remorin_C   8 daWeeaekakikkrykreea 27 
                 d+W   e++k+++ ++r++ 
  KKY17805.1 737 DSWSFRELEKHQEEVRRMKR 756
                 55555555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (820 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       821  (0.0457917); expected 358.6 (0.02)
Passed bias filter:                      689  (0.0384294); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 5303.83
//
Query:       KKY17806.1  [L=1599]
Description: putative dna-directed rna polymerase i subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-88  295.6   0.3      7e-88  294.5   0.3    1.6  1  RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
      7e-66  221.5   0.3    1.3e-65  220.6   0.3    1.5  1  RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
    5.7e-34  117.3   0.0    3.9e-33  114.6   0.0    2.4  2  RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
    7.2e-17   61.3   2.4    7.1e-16   58.1   0.0    3.3  3  RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4
  ------ inclusion threshold ------
      0.019   14.3   6.7      0.069   12.5   5.3    2.5  2  RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.5   0.3     2e-91     7e-88       1     264 [.     896    1541 ..     896    1544 .. 0.97

  Alignments for each domain:
  == domain 1  score: 294.5 bits;  conditional E-value: 2e-91
                      B--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEETTSEEEE.TTS-EEESSGGGTS.......................... CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.......................... RF
  RNA_pol_Rpb1_5    1 GLkvkefffhtmggReGLiDtAvkTaesGYlqRrlvkaledvvvkyddtvrn.sggeivqflygedg.......................... 66  
                      G+++ke++fh+m+gReGLiDtAvkTa+sGYlqR+++k le+v  +yd+tvr+ s+g+++qflygedg                          
      KKY17806.1  896 GINPKEYYFHAMAGREGLIDTAVKTAKSGYLQRCIIKGLEGVRSEYDNTVREtSTGSVIQFLYGEDGvdvvkskhltnfsflaqnqmsvmadl 988 
                      9**************************************************73678************************************* PP

                      ............................................................................................. CS
                      ............................................................................................. RF
  RNA_pol_Rpb1_5   67 ............................................................................................. 66  
                                                                                                                   
      KKY17806.1  989 nvatdyktvakdqprewqkkamkavrktgrvdimdpvlaqyppgnnlgstsetfakalehyveenpdklikdkksvgvegtvskktfrsimdl 1081
                      ********************************************************************************************* PP

                      .....B--TT-BHHHHHHHHHHHHHHCCCSSTTSSTCSSTSSSSSSHHHHHHHHTT.-SS-SS-EEEEEB-SSSSSCHHHCHHHHHHHSE... CS
                      .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx... RF
  RNA_pol_Rpb1_5   67 .....lvepGeavGiiaaQSiGePgTQltlnTFHfaGvasknvtlGvprlkeilnv.skniksksltvllvdeeakelekakkvkkaiek... 150 
                           lvepGeavG++aaQS+GeP+TQ+tlnTFH+aG+a+knvtlG+prl+ei+++ s++i+++++t++l++e   + ++ ++++k i++   
      KKY17806.1 1082 kymrsLVEPGEAVGVVAAQSVGEPSTQMTLNTFHLAGHAAKNVTLGIPRLREIVMTaSAKISTPMMTLKLNEEL--SESDGQTFAKGISRlsl 1172
                      *****************************************************99989*************999..44455678877777889 PP

                      ............................................................................................. CS
                      ............................................................................................. RF
  RNA_pol_Rpb1_5  151 ............................................................................................. 150 
                                                                                                                   
      KKY17806.1 1173 aevideitvkerigsnegyskakiydvtvdfyppedytseyairiedvdrtlrkefipkleklisvefrkkarestlsavtasvpeigvsvgq 1265
                      999****************************************************************************************** PP

                      ............................................................................................. CS
                      ............................................................................................. RF
  RNA_pol_Rpb1_5  151 ............................................................................................. 150 
                                                                                                                   
      KKY17806.1 1266 ieevragranaaadgegdevdedddadpdaakqqrerqaeayddpededaavadssdedsadssdetqrkvkksksrkppqnqreenpddsgd 1358
                      ********************************************************************************************* PP

                      .................................................................CBTTEEEEEEEEEEEEEEET....EEEE CS
                      .................................................................xxxxxxxxxxxxxxxxxxxx....xxxx RF
  RNA_pol_Rpb1_5  151 .................................................................gikkikrilvkeaekgkeee....kelv 174 
                                                                                       +i++ + ++ + +++ ++ +    +e v
      KKY17806.1 1359 esnsvdseaedanqttisqsqhvtsfkfsnkhgnkcrftltydisiskllllpllektardsiiqSIPGLTACISTIEKTRNNVTgkegEECV 1451
                      *****************************************************************9999999998855544444456779*** PP

                      EEECS--HHHHTTSTTTBETTTEEESSHHHHHHHHCHHHHHHHHHHHHHHHHHHTTS---HHHHHHHHHHHTTTSS---SSTTCHCCSSS CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5  175 letegvnlsevlkveevvdageilsndiaeileilgieaarkallkeiqevykvqgvsvndrHlelivdqmtkkgeivavnrsGinkael 264 
                      ++t+gvnl ++ +++++++ + i++n+i+++l+ +g+eaar++++ke+++v++ + +sv+ rHl li+d mt++g + a+nr+Gi k + 
      KKY17806.1 1452 ITTSGVNLLAMRDYQHIIQPHSIYTNSIHDMLTHYGVEAARATIVKEMDSVFSGHSISVDFRHLGLIADAMTQTGGYRAFNRMGIVKDQA 1541
                      *************************************************************************************99876 PP

>> RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.6   0.3   3.7e-69   1.3e-65       1     165 [.     379     558 ..     379     559 .. 0.95

  Alignments for each domain:
  == domain 1  score: 220.6 bits;  conditional E-value: 3.7e-69
                     SEEESSEEEEEEEEESSS-TTEEEEEHHHHTTSEEEEE-STTTHHHHHHHHHHTTTSSSSEEEEESTTSSEEETTTT-SCHHCCTTTTS...... CS
  RNA_pol_Rpb1_2   1 GkrvdysaRsvispdpnlkldevgvPisvakkltvpeivtelnikklrklvengpevyPgasyvkredgsekklkakkrklakelekgd...... 89 
                     Gkrv+++aRsvispdpn++++e+gvP ++akklt+pe+vt++n+ +++++v+ng ++yPgas +++e g++ +lk+k+   + +l+ +       
      KKY17806.1 379 GKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTSHNFYEMKDAVINGVDKYPGASAIENELGQVLSLKQKTPDERIALANQLltpsvs 473
                     9**************************************************************************997654444444447777** PP

                     ........EEEEE--TTSEEEEE-SSTTSGGGEEEEEEEEESS.SSEEEEGGGHCCCT--SSS-EEEEE--SSHHHHHHHHHCSB CS
  RNA_pol_Rpb1_2  90 ........iverhvkdgdvvllNRqPsLhklsimahrvkvlek.ktlrlnlsvttayNaDFDGDemnlhlpqseearaEaeelll 165
                             +v+rh++ gdvvl+NRqP+Lhk sim+h ++vl + kt+r++++++++yNaDFDGDemn+h+pq+e araEa ++++
      KKY17806.1 474 gikgnmnkKVYRHLRSGDVVLMNRQPTLHKPSIMGHIARVLRNeKTIRMHYANCNTYNADFDGDEMNMHFPQNEIARAEAMQIAN 558
                     *****************************************999*************************************9987 PP

>> RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   0.0   1.1e-36   3.9e-33       1     157 []     562     739 ..     562     739 .. 0.90
   2 ?   -1.4   0.0      0.57     2e+03     102     130 ..     939     966 ..     886     984 .. 0.65

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 1.1e-36
                     CSEETTTTEESSS--THHHHHHHHHSSTTEEEEHHHHHHHHHHSSSCCS......SSSSSSSSBESSSEBEEHHHHHHCCCHC.......CCCEE CS
  RNA_pol_Rpb1_3   1 nilspqsgkPvigivQDsllGvyllTkedvfidreeaqqllykgvgsds......ktvtlrpailkpkelwtgkqtfsrilpn.......einye 82 
                     ++ls   gkP+ g++QD+++  + +T +d+f++re++ qlly++  +++      ++++l+pai+kp++ wtgkq++s +l n        in+ 
      KKY17806.1 562 QYLSSTAGKPLRGLIQDHISMGVQFTGRDTFFNREDYHQLLYSCLRPEThgtvseRIQLLPPAIIKPRPMWTGKQVISTVLMNivppnrvGINLI 656
                     6899****************************************99995666777889************************7444444444444 PP

                     EESSSS..............STSEEECSSEEEES--SHHHHSSSSTTSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCEB-TGGGG CS
  RNA_pol_Rpb1_3  83 rkneek..............dgkvlikngelikGvidkkvvgkksqgslihvlakeygiketvrfldslqrlgfkyllqsgftigigDt 157
                          +              +++v++++g l++G++dk+++g  s g+ ih +++ yg k + ++l+ l rl +k+l ++  ++g++D+
      KKY17806.1 657 -----SksstpgerwaknseEQQVIFQDGFLLCGILDKAQLG-PSAGGFIHSIHELYGAKVAGKLLSILGRLLTKFLNMRAWSCGMDDL 739
                     .....2344567888889999*********************.9********************************************6 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.57
                     S--SHHHHSSSSTTSHHHHHHHHCHHHHH CS
  RNA_pol_Rpb1_3 102 Gvidkkvvgkksqgslihvlakeygiket 130
                        d++v  ++s gs+i+ l+ e g++ +
      KKY17806.1 939 SEYDNTVR-ETSTGSVIQFLYGEDGVDVV 966
                     33344444.59999999999999877665 PP

>> RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.11   3.8e+02      47      65 ..     456     481 ..     423     484 .. 0.68
   2 !   58.1   0.0     2e-19   7.1e-16      18     108 .]     799     889 ..     777     889 .. 0.81
   3 ?   -3.0   0.5         2     7e+03      23      46 ..    1354    1380 ..    1330    1395 .. 0.61

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.11
                     T.......TSHHHHHHHCTSSS-HHH CS
  RNA_pol_Rpb1_4  47 a.......sNsiliMvksGaKGsiin 65 
                     +        N++l+ + sG KG++ +
      KKY17806.1 456 TpderialANQLLTPSVSGIKGNMNK 481
                     122333446**************975 PP

  == domain 2  score: 58.1 bits;  conditional E-value: 2e-19
                     HHHHHHHHHHHHHHHHHHHHHHHHHHCSTT.......TSHHHHHHHCTSSS-HHHHHHHHTB-EEEEBTTBSS--SSTSCSSTTSSSSESSTTTS CS
  RNA_pol_Rpb1_4  18 leelfeakinkilnkardkagkiaskslaa.......sNsiliMvksGaKGsiinisqiagclGqqnvegkripkgfsgrtlphfkkidespesr 105
                     l+++++a+++ ++++++++       +l++       +N+++ M+ sGaKGs +n   i++ lGqq +eg+r+p ++sg+tlp++++++++p + 
      KKY17806.1 799 LDQVYNARTSMLSSEITKA-------CLPSglekpfpRNQMQAMTISGAKGSGVNANLISCNLGQQVLEGRRVPVMISGKTLPSYQPFETDPAAG 886
                     4555555555555555544.......444224456678********************************************************* PP

                     SEE CS
  RNA_pol_Rpb1_4 106 GFv 108
                     G+v
      KKY17806.1 887 GYV 889
                     *97 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2
                      H...HHHHHHHHHHHHHHHHHHHHCST CS
  RNA_pol_Rpb1_4   23 e...akinkilnkardkagkiasksla 46  
                      +   +++n++ ++a+d+ ++++s+s++
      KKY17806.1 1354 DdsgDESNSVDSEAEDANQTTISQSQH 1380
                      334456777777777777777777766 PP

>> RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   5.3   1.9e-05     0.069     136     312 .]     108     377 ..      61     377 .. 0.56
   2 ?   -3.1   0.0         1   3.7e+03     175     206 ..     476     507 ..     441     511 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.9e-05
                     HCCS-BE-SSSSB-EEE..........................................................................EEET CS
                     xxxxxxxxxxxxxxxxx..........................................................................xxxx RF
  RNA_pol_Rpb1_1 136 ckkinlcekCgavqpkl..........................................................................eeeg 156
                     ++k ++c++Cg  +p +                                                                           ee+
      KKY17806.1 108 MSKQKKCSTCGGFSPAYrkdrnskifrrplpeklksqmiqaglkpanpllylhslnaeklkskpitngdlnrvgdvrevdtddddsqedhgAEEQ 202
                     44555566666666666555555555555555444444444444444444444444444444444444444444444444444444444443333 PP

                     TEEEEEESSSST.................SCEEEE-HHHHHHHHHCSTHHHHHHTTSBTTTB-GGGCCECCEEE--GGGS-BEESSSSSEEBECC CS
                     xxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 157 eklkaalkkske.................eekeklsaekvkkllkriededvevlgfkssgsrPewliltvlPVpPpeiRPsvqldggrrsedDl 234
                       l++a  ++++                 e+  kl  ++ ++ll+ +   + +    ++ +  Pe + +++++VpP++ RP+ + +g+   e   
      KKY17806.1 203 LALNNAAANEEDsksmgdhtqqyvtsievEAAMKLLFQRNQELLDLMY--NSRPRRKDDPHVTPEMFFIRNVLVPPNRYRPASK-EGQDVLEAQQ 294
                     334333333333666666554333333333344444444444444443..3333344455678******************955.666999**** PP

                     CCHHHHHHHHHHHHHHHHHS........SSSSTCHHHHHH...HHHHHHHHCC-TTSSSSSEEBSTTSSS--THHHHHTSSSSCCCCCT CS
                     xxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 235 teklrdiikrNnrLkkaeee........gapeliieeeke...lLQehvatlfdneisglkpatqkskrplkslsqrLkGKeGrfRgnL 312
                     +  +++iik N+ L ++++e        g     i+   +    LQe v++l+d   +       + +    +++q L  KeG fR+n+
      KKY17806.1 295 NGIFTRIIKSNEVLIQIKREmgltpiedGLRRRGISHYLAaavQLQEVVNSLIDQTANP------ARGIRENGIKQTLEKKEGLFRKNM 377
                     ************99887755111111114444444444332225888899998877644......2333345899************95 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1
                     -HHHHHHHHHCSTHHHHHHTTSBTTTB-GGGC CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 175 saekvkkllkriededvevlgfkssgsrPewl 206
                     + +  kk+++++++ dv++++ ++   +P+ +
      KKY17806.1 476 KGNMNKKVYRHLRSGDVVLMNRQPTLHKPSIM 507
                     56677999*************99999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1282  (0.0715043); expected 358.6 (0.02)
Passed bias filter:                      666  (0.0371465); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.19u 0.34s 00:00:01.53 Elapsed: 00:00:00.50
# Mc/sec: 9571.22
//
Query:       KKY17807.1  [L=588]
Description: putative u4 u6 small nuclear ribonucleoprotein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-74  247.9   5.9    1.9e-73  246.9   5.9    1.6  1  PRP3      pre-mRNA processing factor 3 (PRP3)
    5.2e-47  159.6   1.4    5.2e-47  159.6   1.4    1.9  2  DUF1115   Protein of unknown function (DUF1115)
  ------ inclusion threshold ------
      0.064   13.4   2.6       0.51   10.4   0.2    2.8  3  HD_6      HD domain
       0.46   10.1   4.0        1.5    8.4   4.0    1.9  1  GET2      GET complex subunit GET2


Domain annotation for each model (and alignments):
>> PRP3  pre-mRNA processing factor 3 (PRP3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.9   5.9   4.3e-77   1.9e-73       1     223 []     201     414 ..     201     414 .. 0.93

  Alignments for each domain:
  == domain 1  score: 246.9 bits;  conditional E-value: 4.3e-77
        PRP3   1 npyldprlk.akvkkrkkralkfvekGkfikqaeqlrekaqleelkkeiaeeakkaglesdlklaekapkkeedevpndvEWWDavllkkkekkealke 98 
                 npy+d++l  a++k r++r+l f++kGk+i+qa++lr++aqlee+kk+ia++a++ag+++dl+++ ka+      +p+ +EWWD+ l+  +++++ +  
  KKY17807.1 201 NPYFDQNLGpATTKGRHSRQLIFNQKGKYIQQAAALRRQAQLEEMKKRIAARARQAGIDEDLDVE-KAFLV---PAPPAIEWWDEGLVIGDDYSAID-- 293
                 89*******66888899*********************************************966.77777...7888**********988766655.. PP

        PRP3  99 eekkkekeeeeesklkkitnyveHPvplkppkektkpaakplyLTkkErKklRrqrRkekekekqdkirlGLepppepKvklsNLmrvlgdeavqdPtk 197
                  + k+ k ++e+s    it+y++HPv l+pp+ek  p+akp+yLT+kE+ klRrqrR ++ ke+q+k rlGLep+p+pKvk sNLmrvlg+eav+dPt+
  KKY17807.1 294 -DPKNLKIDTEDS---IITQYIQHPVLLEPPQEKIVPPAKPMYLTPKEQAKLRRQRRLADLKEQQAKWRLGLEPAPPPKVKKSNLMRVLGEEAVKDPTA 388
                 .444556677775...9********************************************************************************** PP

        PRP3 198 vEaeVreqmaeRekkHeerNeeRklt 223
                 vEa+V++++aeR+ +He++NeeRklt
  KKY17807.1 389 VEARVNREIAERKTQHEQMNEERKLT 414
                 ************************98 PP

>> DUF1115  Protein of unknown function (DUF1115)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.4      0.54   2.4e+03      74      86 ..     403     413 ..     354     432 .. 0.56
   2 !  159.6   1.4   1.2e-50   5.2e-47       2     146 .]     438     580 ..     437     580 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.54
     DUF1115  74 ekeaakekkeeee 86 
                 ++e+++e++  + 
  KKY17807.1 403 QHEQMNEER--KL 413
                 111111111..11 PP

  == domain 2  score: 159.6 bits;  conditional E-value: 1.2e-50
     DUF1115   2 vfriksLsnpkhrfkvdknAkqlsltGvvllgpkfnlvvveGgekaikkYkklmlrrikWteee.redeeeeeekeaakekkeeeekd.edekeeekdl 98 
                 v+r++sL+n++hrfk++knA+q +l+G+++++pkfnl++veGg+++i++Ykklm++ri+Wte++ ++  + +e ++   e+  ++ ++ +++++e+kdl
  KKY17807.1 438 VYRVDSLANGRHRFKISKNAEQAALSGICIMHPKFNLIIVEGGHHSIRFYKKLMMQRIDWTENAgPS--SVREGNK---EALAKWLEAeDENTGEQKDL 531
                 9**************************************************************9432..2233333...44455555514555899*** PP

     DUF1115  99 snnkcelvweGevkkrnFkkw.kfkeceteeearevLekkgvehywdla 146
                 s n+c+lv+eGe k+++F+kw  +++cet+++a+++L+++++e++w+la
  KKY17807.1 532 SFNQCQLVFEGEEKEKRFRKWlGARVCETDAQAKDALSRAKMENMWTLA 580
                 ********************999***********************986 PP

>> HD_6  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.29   1.3e+03     139     190 ..      30      92 ..      12      96 .. 0.56
   2 ?    1.1   0.0     0.083   3.7e+02     139     184 ..     237     285 ..     212     291 .. 0.61
   3 ?   10.4   0.2   0.00011      0.51      92     181 ..     411     542 ..     384     554 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.29
                 T..........HHHHHHHHHHHHHHHHCT-TTS-S........---HHHHHHHHHHHHHHHHHC CS
        HD_6 139 e..........dweeaqkelleaaaeflgaaaalllelael..elskaasvllaGlvvlADWig 190
                 +          + +   +++l++a++ ++a++a+l+  + +  + + +as+  ++ ++ AD i+
  KKY17807.1  30 GsplpagasagA-KPDVQRMLAEARAKAEAVRARLQGAKASpsPSPGPASTTSSAGISAADRIA 92 
                 144455555532.222334444444555555555544433346788888888888899999997 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.083
                 T...HHHHHHHHHHHHHHHHCT-TTS-S.......---HHHHHHHHHHHH CS
        HD_6 139 e...dweeaqkelleaaaeflgaaaalllelael.elskaasvllaGlvv 184
                 +   ++ee++k+++++a+++  +++ ++++   l ++++a++++  Glv+
  KKY17807.1 237 RrqaQLEEMKKRIAARARQAGIDEDLDVEKAF-LvPAPPAIEWWDEGLVI 285
                 02334555555555555554444444444444.35*************98 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00011
                 T...----HHHHHHHHHH........................................HHHHHHHHHHHTTTS.---HHHHHTSS-HHHHTTHHHHHHH CS
        HD_6  92 l...ekarHdslgaalle........................................evarslaaavggHHG.kppkeeeekaekkssaaedweeaqk 146
                 +   ++ rH++l     +                                        + + +l+ + ggHH  ++ k+ + ++ + +++a  ++++++
  KKY17807.1 411 RkltKEQRHEKLVTQQEKdvakgifvtvyrvdslangrhrfkisknaeqaalsgicimHPKFNLIIVEGGHHSiRFYKKLMMQRIDWTENA-GPSSVRE 508
                 134578888888877733333444444444444444444444444443344444444444559999*******888887777766666655.799**** PP

                 HHHHHHHHHCT-TTS-S......---HHHHHHHHH CS
        HD_6 147 elleaaaeflgaaaalllelaelelskaasvllaG 181
                  + ea+a++l+a+++   e+++    +++++++ G
  KKY17807.1 509 GNKEALAKWLEAEDENTGEQKD-LSFNQCQLVFEG 542
                 *************999999876.556666666655 PP

>> GET2  GET complex subunit GET2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   4.0   0.00033       1.5       2      85 ..     333     417 ..     332     436 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00033
        GET2   2 LSeaEKrrlLRERRqaKmakGgAssRLnkItgqgssvksst.tsvLdepaaekttpasttasssssas..ehddpeiediseiavkp 85 
                 L+ +E+++l+R RR a +++ +A+ RL        +vk+s+   vL e+a ++ t+ +++ + + ++   +h+  ++e   +++ ++
  KKY17807.1 333 LTPKEQAKLRRQRRLADLKEQQAKWRLGLEPAPPPKVKKSNlMRVLGEEAVKDPTAVEARVNREIAERktQHEQMNEER--KLTKEQ 417
                 7899************************999999999999998999844444333333333333322212233221111..121111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1381  (0.077026); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.49
# Mc/sec: 3615.61
//
Query:       KKY17834.1  [L=994]
Description: putative transmembrane gtpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-19   70.7   1.2    3.3e-19   69.6   0.0    2.0  2  Dynamin_N       Dynamin family
    1.2e-10   41.4   0.0    8.8e-10   38.7   0.0    2.5  2  MMR_HSR1        50S ribosome-binding GTPase
    2.3e-07   30.5   0.4    8.4e-06   25.5   0.6    2.4  1  GTP_EFTU        Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
       0.01   16.4   0.0       0.05   14.1   0.0    2.3  1  AAA_18          AAA domain
      0.034   14.1   0.0      0.077   13.0   0.0    1.5  1  TsaE            Threonylcarbamoyl adenosine biosynthesis prot
      0.047   12.7   0.0      0.097   11.7   0.0    1.4  1  IIGP            Interferon-inducible GTPase (IIGP)
      0.079   13.2   5.4      0.093   12.9   0.9    2.6  3  Jnk-SapK_ap_N   JNK_SAPK-associated protein-1
       0.24   12.0   1.4        8.5    7.0   0.2    3.0  3  PACT_coil_coil  Pericentrin-AKAP-450 domain of centrosomal ta


Domain annotation for each model (and alignments):
>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   1.5e-22   3.3e-19       1     165 [.     301     471 ..     301     474 .. 0.85
   2 ?   -1.1   0.2      0.75   1.7e+03      59      90 ..     627     654 ..     611     680 .. 0.50

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 1.5e-22
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---C.......CS...SSEEEE....T-EB--CHHHHHHHHHHHHHHHTSSSS--S CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeas.......eravkeelkek....ekkledfsevreeieketekiagankgisk 88 
                 ++v G+ ++GKS++ naLl++++lp +++p+T  ++e+   +e+          +++v +    +    + + ++++e+++ + + +   + +    ++
  KKY17834.1 301 VLVTGDLNAGKSTFCNALLRRKVLPEDQQPCTSIFCEVLNAQENGNLeevhavhKDQVYN----RhdesTYDAYKLDELEKIVVDNEHYTQCKIYIKDS 395
                 78************************************9977666434553433333333....24445888899999999999999999988888889 PP

                 S-EEEEEEETTS-SEEEEE---B-SSSGTTSHHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEE CS
   Dynamin_N  89 kvillkilsllvkgltlvDlPGldsvnkrdqelvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvl 165
                 + i  + l   v ++tl+D PGl+   ++    v+   ++ d++++v+sa + ++ s ++f+ +++ +k   ++vv+
  KKY17834.1 396 RSIDQSLLHNGVVDITLIDAPGLNADSVKT-TAVFARQEEIDVVVFVVSAANHFTLSAKEFIWQAAHEKAYMFMVVN 471
                 9************************99999.5566666999*********99*************999999999887 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.75
                 T-EB--CHHHHHHHHHHHHHHHTSSSS--SS- CS
   Dynamin_N  59 ekkledfsevreeieketekiagankgiskkv 90 
                 e+  +++se++ e+e+++++ +    ++s++v
  KKY17834.1 627 ERVSKELSEIEPEYEERKKQRS----SVSEQV 654
                 3334444444444444444443....333332 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   3.9e-13   8.8e-10       1     113 [.     300     471 ..     300     472 .. 0.81
   2 ?   -1.7   0.0       1.3     3e+03      41      60 ..     766     785 ..     737     798 .. 0.69

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 3.9e-13
                 EEEEEESTTSSHHHHHHHHHTSTEEE.SSSTTSSSSEEEEEEEETTEE................................................... CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaiv.sdkpgtTrdinegrvklkgke................................................... 47 
                 +v++ G  N+GKSt+ nal+++k+    ++p t +  +  + +++g +                                                   
  KKY17834.1 300 KVLVTGDLNAGKSTFCNALLRRKVLPeDQQPCTSIFCEVLNAQENG-Nleevhavhkdqvynrhdestydaykldelekivvdnehytqckiyikdsrs 397
                 5899******************886615555666666777777544.24678888888899999999999***************************** PP

                 ............EEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEE CS
    MMR_HSR1  48 ............ielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldeeleelleeakkplilvln 113
                             i+l+D pG ++   ++ + +  f++ ee d++++vv+a+++ ++   +e+     ++k  +++v+n
  KKY17834.1 398 idqsllhngvvdITLIDAPG-LN--ADSVKTTAVFARQEEIDVVVFVVSAANH-FTLSAKEFIWQAAHEKAYMFMVVN 471
                 ********************.65..234478999999999*********8844.666666666665556777888877 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.3
                 EEETTEEEEEEECGGCSSHH CS
    MMR_HSR1  41 vklkgkeielvDtpGliega 60 
                 v+++ + + + D++Gl e++
  KKY17834.1 766 VDTEVEIWDFFDLAGLWERQ 785
                 33333558999****77622 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.6   3.7e-09   8.4e-06       5     150 ..     300     493 ..     296     520 .. 0.69

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 3.7e-09
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHST................................HCHSHHHHHHTSCSSCEEEEEE....... CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeerv................................lDtlkeErergiTiksaaisle....... 64 
                 ++ + g++++GK+T++ +Ll ++   ++++  +  + +                                 D  k ++   i ++ ++ +         
  KKY17834.1 300 KVLVTGDLNAGKSTFCNALLRRKVLPEDQQPCT--S-IfcevlnaqengnleevhavhkdqvynrhdestYDAYKLDELEKIVVDNEHYTQCkiyikds 395
                 578999999999999999996655544433222..1.12344455566777888888888888888888866666555555555544433224777788 PP

                 .......TTCSSEEEEEEEESSSG.GGHHHHHHH..HHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST..HHHHHHHHHHHHHHH CS
    GTP_EFTU  65 .......ketkkylinliDtPGHv.dFskevirg..lrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrl..kaelkeiveevkqkl 150
                         +     i+liD+PG   d +k++      + +D++v+vv+a++  +   +e + +a  e+  +++++N  D++  k+++++++ e  qkl
  KKY17834.1 396 rsidqslLHNGVVDITLIDAPGLNaDSVKTTAVFarQEEIDVVVFVVSAANHFTLSAKEFIWQAAHEKAYMFMVVNGFDNIrdKERCQRLILEQIQKL 493
                 88877544788899********651555554444235569*****************************************98667666554444455 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.2e-05      0.05       1      60 [.     301     386 ..     301     414 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.2e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf...........................gvnlrdvakenglllevdpealdeskrldedkldkl 60 
                 +l+tG   +GK+t++++L +r ++                           + +++d +++++ + ++d+++lde ++++ d+ ++ 
  KKY17834.1 301 VLVTGDLNAGKSTFCNALLRR-KVlpedqqpctsifcevlnaqengnleevHAVHKDQVYNRHDESTYDAYKLDELEKIVVDNEHYT 386
                 79****************777.34456666666667777777777777888888888888888888888888888887777776655 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.4e-05     0.077      13      87 ..     293     374 ..     278     401 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.4e-05
                 HHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT--.----TTTTSEEEEEE..SS......EEEEE.-TT-SSTHHHHHCTTCC CS
        TsaE  13 klakalgdvilLeGdLGaGKTtlvrglakalgve.evkSPTFtlveeYelekeg......lyHfD.lYRledeeeleelglee 87 
                 ++ + +++ +l +GdL aGK+t++ +l++   +  + +  T   +e  +++++g       +H D +Y  +de+  ++ +l+e
  KKY17834.1 293 RIED-TSSKVLVTGDLNAGKSTFCNALLRRKVLPeDQQPCTSIFCEVLNAQENGnleevhAVHKDqVYNRHDESTYDAYKLDE 374
                 3333.245599*****************9876653333333333344433333355577766776456665655555555555 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.3e-05     0.097      13      55 ..     276     318 ..     266     330 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.3e-05
                 HHT-HHHHHHHHHHHHHHHHT--EEEEEEESTTSSHHHHHHHH CS
        IIGP  13 kegnlqkvvsiikeaikeiesaklkiavtGdsGnGkssFinaL 55 
                  +g++++ +  +      ie +  k+ vtGd  +Gks+F naL
  KKY17834.1 276 LDGKISQSIRHLLALRDRIEDTSSKVLVTGDLNAGKSTFCNAL 318
                 5677777777777777788999999*****************8 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.16   3.7e+02      84     133 ..     115     166 ..     106     177 .. 0.67
   2 ?   12.9   0.9   4.2e-05     0.093      32      88 ..     605     662 ..     594     676 .. 0.88
   3 ?   -4.0   0.1       6.7   1.5e+04      56      74 ..     930     948 ..     924     960 .. 0.58

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.16
  Jnk-SapK_ap_N  84 edqweeerkelqekveqleeenrele.lka.knaadqlsrleekeaelkkey 133
                      + e+e+k l ++v+ql  +++++  +ka   + d l++l++ +a++   y
     KKY17834.1 115 NAASENEKKILASHVHQLYYNQNRVAlAKAiGRTIDALKELQKMNAQWPAHY 166
                    567899***********99555555413431345566666666666666555 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4.2e-05
  Jnk-SapK_ap_N  32 VkvLElLeslasrnee.eeaeleelreeleqLeteyerekelrkraeeeleeiedqwe 88 
                     +vL  L +la+ n+   +aele++++el+++e eye++k++r    e++e+  dq+ 
     KKY17834.1 605 LNVLGDLNALATVNRDvASAELERVSKELSEIEPEYEERKKQRSSVSEQVERDNDQII 662
                    689999999999887626799*****************************99999975 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 6.7
  Jnk-SapK_ap_N  56 reeleqLeteyerekelrk 74 
                     +e+eqL  ++e+  + ++
     KKY17834.1 930 AQEVEQLGRRKEDVSKVKR 948
                    4445555554444444333 PP

>> PACT_coil_coil  Pericentrin-AKAP-450 domain of centrosomal targeting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         8   1.8e+04      34      63 ..     152     180 ..     148     187 .. 0.63
   2 ?    2.5   0.0     0.095   2.1e+02      11      33 ..     458     480 ..     452     518 .. 0.75
   3 ?    7.0   0.2    0.0038       8.5       5      45 ..     590     634 ..     586     656 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 8
  PACT_coil_coil  34 lrllarigvelkkkkkskeeekrrkprrkl 63 
                     l+ l++++++  + + +  + ++r+ r+ l
      KKY17834.1 152 LKELQKMNAQW-PAHYPTVQGSTREGRPAL 180
                     78899999988.444444555555555555 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.095
  PACT_coil_coil  11 dlayqKrYLllqlevfqacnkad 33 
                     ++a++K Y+ + +++f++  +++
      KKY17834.1 458 QAAHEKAYMFMVVNGFDNIRDKE 480
                     689***********998765443 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0038
  PACT_coil_coil   5 eeslRkdlayqKrYLllqlevfqacn....kadlrllarigvelk 45 
                     e++ R+ la +K YLl  l++ +a      +   + l+r+ +el+
      KKY17834.1 590 EKRARSKLAPAKTYLLNVLGDLNALAtvnrDVASAELERVSKELS 634
                     6789****************9998651111334456777777774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (994 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       911  (0.0508115); expected 358.6 (0.02)
Passed bias filter:                      636  (0.0354733); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.93u 0.43s 00:00:01.36 Elapsed: 00:00:00.59
# Mc/sec: 5050.55
//
Query:       KKY17835.1  [L=247]
Description: putative snf7 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-37  129.2  16.8    1.6e-37  128.7  16.8    1.2  1  Snf7           Snf7
  ------ inclusion threshold ------
       0.13   12.2   6.8       0.23   11.4   6.8    1.5  1  Ist1           Regulator of Vps4 activity in the MVB pathway
       0.41   10.2   9.1       0.52    9.8   9.1    1.3  1  Exonuc_VII_L   Exonuclease VII, large subunit
       0.86   10.0  20.6        9.9    6.5   7.5    2.2  2  YlqD           YlqD protein
        1.3    9.0   9.4        1.7    8.6   8.5    1.7  1  Remorin_C      Remorin, C-terminal region
        1.5    7.5   4.1        1.9    7.2   4.1    1.1  1  O-antigen_lig  O-antigen ligase like membrane protein


Domain annotation for each model (and alignments):
>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.7  16.8   5.5e-41   1.6e-37       3     170 ..      47     211 ..      45     213 .. 0.97

  Alignments for each domain:
  == domain 1  score: 128.7 bits;  conditional E-value: 5.5e-41
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
        Snf7   3 irsLrkaerkldkkqeslekkikkleaelkklakkgnkdralllLKqkkryekqldqldnqlanleqvslaienlksnkevlnamkqgakamkamnkkv 101
                 +r+L k++r+ld+++ +le+++kkl +++kk ak+g+  +a++ +K+++r++++++++++++ +l+++sl i++  sn +++++mk+++k + +mn+++
  KKY17835.1  47 QRALEKTQRELDRERVKLENQEKKLVQDIKKSAKSGQIGAAKIQAKDLVRTRRYIQKFYQMRTQLQAISLRIQTVRSNEQMVQSMKGATKLLGSMNRQM 145
                 789************************************************************************************************ PP

                 CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTT-.GGTTHHHHHHHHHHHHHHHHHCSH.HHHHHHHTXXX CS
        Snf7 102 didkidklmdeiedqmekaeeisEalsrsldda.deedEeeleaeLdaLeqelgdeelldesvklpevPs 170
                 +++ ++++ +e+e++++++++ +E++++++dda   edEee e++++++++e+g +     +++l e Ps
  KKY17835.1 146 NLPALQRIAMEFERENDIMDQRQEMMDDAIDDAtGLEDEEEGEEVVNQVLDEIGVDL----GQSLGETPS 211
                 *********************************999******************999....888888887 PP

>> Ist1  Regulator of Vps4 activity in the MVB pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   6.8   7.6e-05      0.23       9     108 ..      55     153 ..      47     201 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.6e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT--SSSSSHHHHHHHHHHHHHH-TTTTTHHH CS
        Ist1   9 qrlkllqkkkealakqarrdiaqlLengkeekArirveqliredillelleilelycelllarlsllekqkeldeelkEAvssliyAaprvselkELke 107
                 + l+  + k e++ k+  +di +  ++g+   A+i++++l+r  ++++ + ++ + ++ +  r++++++++++ +++k A + l  + +r  +l+ L+ 
  KKY17835.1  55 RELDRERVKLENQEKKLVQDIKKSAKSGQIGAAKIQAKDLVRTRRYIQKFYQMRTQLQAISLRIQTVRSNEQMVQSMKGATKLLG-SMNRQMNLPALQR 152
                 556667889999*************************************************************999999876443.3333336666655 PP

                 H CS
        Ist1 108 l 108
                 +
  KKY17835.1 153 I 153
                 5 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   9.1   0.00018      0.52     144     260 ..      17     139 ..       4     185 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00018
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelk.erl.k.....ekleekkerlk 233
                   + ++ l + ++ +e a+ ++++  ++rl+k +++l++ ++ l+r+r +l++ e++l + +kk++k+ +    +++ + l +     +k+ +++++l+
    KKY17835.1  17 TTKNLLTHKMNVIEWAFGKRMT-PAERLRKHQRALEKTQRELDRERVKLENQEKKLVQDIKKSAKSGQIGAAKIQaKDLvRtrryiQKFYQMRTQLQ 112
                   4444444444444455555554.55788888888888888888888888888888888888774444433333331112224445577888888888 PP

  Exonuc_VII_L 234 klkerlelleekkerleeleekleals 260
                   +++ r+++++++++++++++   ++l+
    KKY17835.1 113 AISLRIQTVRSNEQMVQSMKGATKLLG 139
                   888888888888888888777666664 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  12.1    0.0081        24      20      86 ..      45     114 ..      35     131 .. 0.70
   2 ?    6.5   7.5    0.0033       9.9      30     102 ..     105     197 ..      95     225 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0081
        YlqD  20 elqqqlqaqieqldkelqqLefqakrlikeikkqsaq.qieeiqeqvek..ekserlekkkqllqqleqv 86 
                 + q+ l++  ++ld+e  +Le q+k+l+++ikk  ++ qi +++ q++   + ++  +k  q++ ql+ +
  KKY17835.1  45 KHQRALEKTQRELDRERVKLENQEKKLVQDIKKSAKSgQIGAAKIQAKDlvRTRRYIQKFYQMRTQLQAI 114
                 56889999***********************997777855555555554114445556666666666655 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0033
        YlqD  30 eqldkelqqLefqakrlikeikk.qsaq................qieeiqeqvekekserlekkkqllqqleqvqkLelgs...evkqgqves 102
                  q+ ++lq +++  + + ++ +  qs++                + ++i +++e+e + + ++++ +++ +++   Le ++   ev+++ +++
  KKY17835.1 105 YQMRTQLQAISLRIQTVRSNEQMvQSMKgatkllgsmnrqmnlpALQRIAMEFERENDIMDQRQEMMDDAIDDATGLEDEEegeEVVNQVLDE 197
                 45555555554444444333322023335556677777777788*************999999999999999999998665110555555554 PP

>> Remorin_C  Remorin, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   8.5   0.00055       1.7      38     100 ..      44     106 ..      16     113 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00055
   Remorin_C  38 akaeaelrkleeklEkkrakaleklknklariekkAeekRasaeakrreeelktkekankirs 100
                 +k +++l+k++++l+++r k +++ k+ ++ i+k A+  ++ a + ++++  +t + ++k+ +
  KKY17835.1  44 RKHQRALEKTQRELDRERVKLENQEKKLVQDIKKSAKSGQIGAAKIQAKDLVRTRRYIQKFYQ 106
                 588999**************************************9999999999999888765 PP

>> O-antigen_lig  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.1   0.00063       1.9     287     380 ..      57     159 ..      17     167 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00063
  O-antigen_lig 287 k.........eeeeikneikenykseglkeavleqyeyandkqfsqellkeeveslllsnRdlqlkvlkqvyknadisekLfGigYsrrtniknke 373
                              +e+++ ++ik+  ks ++  a ++  +     ++ q++++ +++  ++s R + ++ ++q+++  +  +kL+G    +++  + ++
     KKY17835.1  57 LdrervklenQEKKLVQDIKKSAKSGQIGAAKIQAKDLVRTRRYIQKFYQMRTQLQAISLRIQTVRSNEQMVQSMKGATKLLGSMNRQMNLPALQR 152
                    122223444466667777999999999999999999999999999**************************************9988887777777 PP

  O-antigen_lig 374 dekllEr 380
                     ++ +Er
     KKY17835.1 153 IAMEFER 159
                    7776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1952  (0.108874); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.53
# Mc/sec: 1409.46
//
Query:       KKY17836.1  [L=886]
Description: putative arrestin domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-21   75.1   0.0    1.7e-20   73.8   0.0    1.7  2  Arrestin_C       Arrestin (or S-antigen), C-terminal domain
      4e-07   30.0   0.0    7.3e-07   29.2   0.0    1.4  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.7e-05   25.1   0.0    3.1e-05   24.3   0.0    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    3.8e-05   23.9   0.0     0.0001   22.5   0.0    1.7  1  Acetyltransf_1   Acetyltransferase (GNAT) family
     0.0003   20.9   0.0    0.00071   19.6   0.0    1.6  1  Arrestin_N       Arrestin (or S-antigen), N-terminal domain
  ------ inclusion threshold ------
      0.012   15.6   0.0      0.026   14.5   0.0    1.5  1  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> Arrestin_C  Arrestin (or S-antigen), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       4.8   1.4e+04      85     113 ..     142     170 ..      97     178 .. 0.70
   2 !   73.8   0.0   5.7e-24   1.7e-20       1     132 [.     208     407 ..     208     409 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.8
                 E.--..--B-----S---EEEEEEEEEEEEE CS
  Arrestin_C  85 lqiP..eeltpssarnvelikvsYklkvklt 113
                 +++P    l+++   +v+l +v+Y+l+ +++
  KKY17836.1 142 FELPidSRLPETI--DVDLGNVKYELEASVE 170
                 3344334455555..6777777777776665 PP

  == domain 2  score: 73.8 bits;  conditional E-value: 5.7e-24
                 ----EEEEEEES-SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEEESS..............................SEEEEEEEEEEEEE--- CS
  Arrestin_C   1 wdgkvsleaslpkkgyvpGetipvtvkidndskkkvkkikvslvqhvdvcafnr............................snkkeknvvaksdsvkv 71 
                 w++++++++++++k+++ G ++p+ +k++++ k+++++ikv ++++++++ +n+                            s                
  KKY17836.1 208 WEDQLHYDIVISGKSFPLGAQVPIAFKLTPLAKVQCHRIKVFVTENIQYFTNNKrvhrleptrkvllfekradgrststypgS---------------S 291
                 99******************************************************999777777775544444444443330...............2 PP

                 .....................................B-TTEE.EEEEEEE.--......--B--...---S---EEEEEEEEEEEEEEE........S CS
  Arrestin_C  72 .....................................tsaakdkletevelqiP......eeltp...ssarnvelikvsYklkvkltls........g 116
                                                      +sa+ ++ e+e+++q+P      ++l++   + +++++ i+v++++k++++ls        +
  KKY17836.1 292 mrvvagggvswddraraaagdedvrrdennllgnlesDSASIGPTEMEFNVQLPschamkDKLKSeriTFDTTSQTIQVNHWIKIVMRLSkpddndpgK 390
                 5556666666666667777777777777777788888899**************988887556656666668*************************85 PP

                 .SEEEEEEEEEEEEEB- CS
  Arrestin_C 117 .sggelslelPivlgsv 132
                  +++e+s+++P++++s+
  KKY17836.1 391 rRHFEISIDSPFHILSC 407
                 7*************998 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   2.4e-10   7.3e-07      57     119 ..     810     872 ..     802     880 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 2.4e-10
  Acetyltransf_10  57 lfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnaspyavpfYeklGFkavgeeqeenGir 119
                      + V p  +g+Gig+ L+e+v ++a+ + +    l+   ++  v++Ye lGF++ g+ ++e+G  
       KKY17836.1 810 VTVLPGEQGKGIGRLLFEDVTRKADVE-GTRcYLESSRDKPNVQIYEALGFEVKGKLKVEDGDD 872
                      5799999*****************555.554477777777*********************965 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0     1e-08   3.1e-05      16      75 ..     803     860 ..     780     861 .. 0.59

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1e-08
                     EEEEEEEESTCTEE.EEE-GGGTTSSHHHHHHH.H.TT...SE..EEEEEEEE...THHHHHHHHHHTTEE CS
  Acetyltransf_7  16 Gfialslldaeitr.laVdpeyrgkGiGraLle.a.ae...kg..iileqlel...naekaikfYeklGFe 75 
                     G        ++ ++ + V+p  +gkGiGr L e + ++   +g  +     +l   +++++++ Ye lGFe
      KKY17836.1 803 G--------YWFCNiVTVLPGEQGKGIGRLLFEdVtRKadvEGtrC-----YLessRDKPNVQIYEALGFE 860
                     2........22233578***************96442235555223.....553222238899*******9 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   3.3e-08    0.0001      42     117 .]     732     859 ..     694     859 .. 0.66

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 3.3e-08
                     TEEEEEE...........................................EEEEEET...............TSTTEEEEEEEEESGGGTTSSHH CS
  Acetyltransf_1  42 geliGfi...........................................sllkipd...............ekggvayieslaVspeyrgkGlG 78 
                     +++iG +                                           +    ++                ++g+++ + + V p  +gkG+G
      KKY17836.1 732 NRVIGVAmwlppspasapqtwtawyhdyllwfrqglqnirymgrgglitkR----YWiwkeeqakiqkelwtDERGYWFCNIVTVLPGEQGKGIG 822
                     666666655555555555555555555555555555555555555533332....22333355555556666667888888999*********** PP

                     HHHHHHHHHHHHHTTESEEEEEEETT.EHHHHHHHHHTTE CS
  Acetyltransf_1  79 saLlealeerareegikkivlaveed.ndaairlYeklGF 117
                     ++L e++ ++a  eg +  +l+   + +++ +  Ye lGF
      KKY17836.1 823 RLLFEDVTRKADVEGTRC-YLES--SrDKPNVQIYEALGF 859
                     *********777776655.8844..336788****99**9 PP

>> Arrestin_N  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.4e-07   0.00071      54     140 ..      98     188 ..      78     191 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.4e-07
                 CCCEEEEEEEEEEEEESTSSSSS.SSSSHHHHHHHH...-TTEEEEEE---TTS--SECSGEEEEEEEEEEEEECCCE--C...CCEEEEEE CS
  Arrestin_N  54 gktfrkdltlkkkqeyleteksllkskkdsqekLpk...GehafpFsfelPknlpsSfeGkaggvrYevkvtldrpwkidkk..kkkvftVi 140
                 ++ +r +l+++++ ++ + e++  ++ + +q+ ++    G+++++F + + + lp ++  + g+v+Ye+++ ++r+ ++ ++   +k++t i
  KKY17836.1  98 REAKRLSLQVNQSRSFGKGETPSGGP-TVAQKGFKVfhpGDYIYNFELPIDSRLPETIDVDLGNVKYELEASVERSGAFRANlvGSKEVTFI 188
                 55556666777777788888887666.777777544445************************************99665543356666655 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   8.8e-06     0.026      26      79 ..     809     861 ..     786     866 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.8e-06
                 EEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EE CS
        FR47  26 alqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfek 79 
                  + vlp  +++G g++l + ++++   +g    l     ++p  ++ye+lGfe+
  KKY17836.1 809 IVTVLPGEQGKGIGRLLFEDVTRKADVEGTRCYLE-SSRDKPNVQIYEALGFEV 861
                 6899********************99999887765.6789************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (886 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.50
# Mc/sec: 5282.35
//
Query:       KKY17837.1  [L=601]
Description: putative acetylglutamate synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-52  175.0   0.0    4.8e-51  172.8   0.0    2.1  3  NAT       NAT, N-acetyltransferase, of N-acetylglutamate synt


Domain annotation for each model (and alignments):
>> NAT  NAT, N-acetyltransferase, of N-acetylglutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1      0.23   4.1e+03      44      61 ..      10      27 ..       6      29 .. 0.77
   2 ?   -2.6   0.0      0.21   3.9e+03      32      66 ..     146     181 ..     132     185 .. 0.59
   3 !  172.8   0.0   2.7e-55   4.8e-51      12     153 ..     391     558 ..     384     578 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.23
                STTTSSXHHHHHHHHHTS CS
         NAT 44 sfkrkldvkdYldrlkgk 61
                s ++k d+k Y++rlk++
  KKY17837.1 10 SAATKRDAKAYISRLKST 27
                45689999******9875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.21
                 SXCCHHHHHHTTSTTTSSXHHHHHHHH.HTSXEEEE CS
         NAT  32 idlekLksliedsfkrkldvkdYldrl.kgkiakiy 66 
                  ++++L ++ie+ +  + ++ d + +l  ++i k++
  KKY17837.1 146 RQANRLVDAIEKFRGSRASKVDSVMSLsDNNICKVF 181
                 477899999998885444444444444155555555 PP

  == domain 3  score: 172.8 bits;  conditional E-value: 2.7e-55
                 SSEEEE---XEEEESSCCCS...............SXCCHHHHHHTTSTTTSSXHHHHHHHHHTSXEEEEEETTXSEEEEE.....EXSS......SSX CS
         NAT  12 agtlirrGlkvitvkslkel...............idlekLksliedsfkrkldvkdYldrlkgkiakiyiaedyeglAivtwedpkeek......eva 89 
                   t++++G+++++ +++++                idl++L +liedsf+r+ld+++Yl+r++++ia+ +ia++yeg Ai+twe+p   +      +v+
  KKY17837.1 391 TSTFVKKGMPLTMLPDPRTTpwtphgprinlhdprIDLPRLVHLIEDSFNRTLDLEHYLNRVNNRIAGLIIAGNYEGGAILTWETPPGVSptdlsrQVP 489
                 56***********************************************************************************99988999999*** PP

                 EEEEEEEXHHHHHT.THHHHHHHHH.HHHXSS.EEEEEETTXTTHHHHHHCXSEEEE..ETTEEEEEES CS
         NAT  90 yLdkFavlkssqgs.gvsdvvfkal.kkdfpk.LvWrsrednpvnkWyfersdGslk..ksqwvlfWyG 153
                 yLdkFavlk+sqg  gv+d+vf+a+ +  fp+ ++Wrsr++npvnkWyfer+ G++k  +++w++fW++
  KKY17837.1 490 YLDKFAVLKRSQGAgGVADIVFNAMvRGCFPNgVCWRSRRTNPVNKWYFERARGTWKipETEWTMFWTT 558
                 *************************8899***************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3850.54
//
Query:       KKY17838.1  [L=275]
Description: putative phosphotransferase enzyme family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-09   36.1   0.0    2.1e-08   34.4   0.0    1.8  1  APH             Phosphotransferase enzyme family
    0.00038   20.1   0.0      0.002   17.8   0.0    1.9  2  Choline_kinase  Choline/ethanolamine kinase
  ------ inclusion threshold ------
      0.057   12.3   0.0      0.093   11.6   0.0    1.4  1  DUF1679         Protein of unknown function (DUF1679)


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   3.5e-12   2.1e-08      34     223 ..      24     254 ..       4     266 .. 0.68

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 3.5e-12
                 HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS...HHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-............. CS
         APH  34 aeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr...klsaaqlpellealgeflaalhqvdpaalpla............. 116
                  ee+++e  l+   +++ +pvPev+a    d+e+g+ + ++ey+pg++ll+   +ls+ q+ ++ + l  + a++ ++ pa++ l              
  KKY17838.1  24 VEELEAETMLFVK-RATSIPVPEVYA-AYRDDENGMFYIIMEYIPGTTLLEawpTLSDGQKSNITRVLKNYSAQIRNL-PAQDYLGgvgkrhmpngifw 119
                 4666666666666.56778******9.5678889999*****************999999999999999999999999.44333332233333333333 PP

                 ..SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHH................HHHHHHHH--SSS-EEEE-SS-SGGGEEEC................ CS
         APH 117 ..dflaqdlellrqlesatarllaselldlleeleeq................vlaalaallpgelptvllHgDlhpgNllvd................ 181
                   +       ++++  +   +++  +  +  e+l+                  +++++++ +++  p v++H D+   N++v+                
  KKY17838.1 120 sgG-------EDAKDIRI--NGPFDNEAQFNEALALKsdliadannygsykgpFYRRMLPKVLTGHPSVFTHADFQRKNIVVRrlsggepslneesnet 209
                 331.......22222222..223322222111111113344444578888999888888888889********************99999999999977 PP

                 .....TTEEEEE---TT-EEEECCHHHHCCHHH.CSCHCCCHCHHH CS
         APH 182 ...pddgrvtGviDfedaglgpplyDlavllrs.wtseldpeflaa 223
                    ++  +v  +iD+e a + p  ++   + ++   ++ ++e+ ++
  KKY17838.1 210 ngkETSFEV-ILIDWEKAAWYPSYWEYCAASWAfRFEDDWDEWIEQ 254
                 776444444.599999999999999996666553444555555544 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.1   6.1e+02      41      57 ..      51      70 ..      19      85 .. 0.81
   2 !   17.8   0.0   3.3e-07     0.002     141     176 ..     174     228 ..     144     242 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.1
                    EEETTEEEE...E--TCEE- CS
  Choline_kinase 41 gifenGrie...efiesrtl 57
                      +enG+++   e+i+++tl
      KKY17838.1 51 RDDENGMFYiimEYIPGTTL 70
                    44789998888899999998 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 3.3e-07
                     HGG-EEEE-S--SGGGEEE....................-CTTEEEE--GTT-EE CS
  Choline_kinase 141 lespvvfcHnDlqegNill...................nkeekklvlIDFEYagy 176
                     + +p vf H D q +Ni++                   +++  +++lID+E a+ 
      KKY17838.1 174 TGHPSVFTHADFQRKNIVVrrlsggepslneesnetngKETSFEVILIDWEKAAW 228
                     56789*******************************9999999********8765 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.6e-05     0.093     122     204 ..      32     112 ..      17     203 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.6e-05
     DUF1679 122 ileklnheeilltkvyflkkfdeenklkgyiimeyvedihtlsmyenikadelipvlkaiAtlqalslslseeekksasgadf 204
                 +l   ++ +i++++vy+     ++++   yiimey+++ + l++  ++++ +  ++ + + + +a+  +l++++     g+  
  KKY17838.1  32 MLFVKRATSIPVPEVYAAY--RDDENGMFYIIMEYIPGTTLLEAWPTLSDGQKSNITRVLKNYSAQIRNLPAQDYLGGVGKRH 112
                 444444679*******975..45555668*********************999999999999999999999888665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1758.98
//
Query:       KKY17839.1  [L=285]
Description: putative 6-phosphogluconate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-20   71.7   3.5    1.7e-19   70.5   3.1    1.8  2  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    8.2e-10   39.0   0.1    1.8e-09   37.9   0.1    1.6  1  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut
    0.00076   19.1   0.4     0.0039   16.8   0.4    2.1  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
     0.0025   18.0   0.0     0.0063   16.7   0.0    1.6  1  UDPG_MGDP_dh    UDP-glucose/GDP-mannose dehydrogenase family,
     0.0041   17.7   6.5       0.01   16.4   3.8    2.5  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
     0.0089   15.1   0.9      0.013   14.5   0.9    1.2  1  PDH             Prephenate dehydrogenase
  ------ inclusion threshold ------
      0.023   14.3   0.1      0.098   12.2   0.1    1.9  2  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
      0.068   13.2   0.1       0.16   12.1   0.1    1.6  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       0.7   1.6e+03       2      10 ..       9      17 ..       8      20 .. 0.86
   2 !   70.5   3.1   7.7e-23   1.7e-19      34     145 ..      19     132 ..      13     146 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.7
                   EEEE--SHH CS
  NAD_binding_2  2 igfiGlGvM 10
                   ++fiG+G+M
     KKY17839.1  9 LAFIGVGTM 17
                   79******9 PP

  == domain 2  score: 70.5 bits;  conditional E-value: 7.7e-23
                    HHHHHHHTT..EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT-EEEE-S---HHHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT- CS
  NAD_binding_2  34 kveelvaeg..akaaesieelvasldvvitmvkagkavdeviegllealkkgdilidgstsspedtrelakelkekglkfldaPVSGGeegAekGt 127
                    k+e+ +++   aka+++++e+vas+d++++++  ++av+++ie+ +++  kg++++d+st++p++t+ ++k ++++g +f+ +PV G  + A++G+
     KKY17839.1  19 KAEDHASAIgnAKAVTDVSEAVASADIIFMCLGVDAAVQSTIESAVKSDVKGKLFVDCSTIHPDTTTMISKVIEAQGGHFVACPVFGAPAMAQSGQ 114
                    4444444423599*********************************************************************************** PP

                    EEEEEEE-HHHHHHHHHH CS
  NAD_binding_2 128 LsimvGGseeafervkpv 145
                    L ++v+G++++ +rv p+
     KKY17839.1 115 LVCVVAGPADQTKRVFPF 132
                    ************999875 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.1   8.1e-13   1.8e-09       3     119 ..     152     269 ..     150     271 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 8.1e-13
  NAD_binding_11   3 GqavKlvnnlllainlaaasEalvlaekaGldpekvlevinassgrsnalenklpqrvlsrdf....dpgFaldlmlKDlglalelareagaplp 93 
                     ++ +K++ n+ +   +  ++E+ v+aek Gl +e++ + ++a   + ++    + +r+l++d+     p F +dl +KD g a  la+eag ++ 
      KKY17839.1 152 ATLMKIIGNTFILSMVSTLAEGHVMAEKTGLGVEELHKFVEAMFPGPFTA---YSKRMLEGDYylrdSPLFGVDLARKDAGHAAHLAKEAGTSMK 243
                     5789*************************************999887553...45689999985555689************************* PP

  NAD_binding_11  94 llalaeqlyaaaaaegggdaDhsaiv 119
                     ++++a   ++++++++g++ D + i+
      KKY17839.1 244 IAEVADGYLKMVKEHMGEKGDIAGIY 269
                     *********************99886 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.4   1.7e-06    0.0039      59     156 ..      25     110 ..       9     122 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.7e-06
                     CHTTTEEEES-HHHHHHC-SEEEE-----B-TTTTCB-THHHHHHHHHHHHHHHCEEEEEE-S---TTHHHHCHHHHHHHHCSS-TTCEEEEE-- CS
  UDPG_MGDP_dh_N  59 vesgrlsfttdvekaveeadvifiaVgTPskkkgkaaDlkyvesaarsiaealkkgkvvvvkSTvpvgtaeelvkkileeaskkkgvdfdvvsnP 153
                      + g+ ++ tdv++av++ad+if++ g  +          +v+s+++s  +   kgk+ v  ST+ + t+  +++k++e +   + v   v   P
      KKY17839.1  25 SAIGNAKAVTDVSEAVASADIIFMCLGVDA----------AVQSTIESAVKSDVKGKLFVDCSTIHPDTTT-MISKVIEAQGG-HFVACPVFGAP 107
                     4458999******************99533..........3667777777777889**************9.99999987765.34555555555 PP

                     --- CS
  UDPG_MGDP_dh_N 154 Efl 156
                        
      KKY17839.1 108 AMA 110
                     555 PP

>> UDPG_MGDP_dh  UDP-glucose/GDP-mannose dehydrogenase family, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.8e-06    0.0063       2      87 ..     151     247 ..     150     250 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.8e-06
  UDPG_MGDP_dh   2 tAEliKlaaNaflatkIsfiNelanlcealgidveeVieavgldprigp............kflkpglGvGGsclpkDvkaLvalaeelgleaelle 86 
                   +A l+K++ N+f   ++s   e + ++e++g+ vee+ + v++     p             +l+ ++ +G     kD    ++la+e+g+++++ e
    KKY17839.1 151 KATLMKIIGNTFILSMVSTLAEGHVMAEKTGLGVEELHKFVEAMFPG-PftayskrmlegdYYLRDSPLFGVDLARKDAGHAAHLAKEAGTSMKIAE 246
                   6899*************************************998764.447789999999899*****************************99987 PP

  UDPG_MGDP_dh  87 a 87 
                    
    KKY17839.1 247 V 247
                   6 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   3.8   4.5e-06      0.01      33      95 ..      14      77 ..       9      78 .. 0.84
   2 ?   -3.3   0.0       6.4   1.4e+04      36      52 ..     228     244 ..     224     250 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.5e-06
                   ESSCCCHHHHHHHHC.-EEECECHHHHHHH-SEEEE-S-HH.HHHHHHHHCGHHHHTTSEEEEES CS
  F420_oxidored 33 srnpekaeelaeelg.vkvtavdneeaaeeadvvvlavkpe.dveevlselakdalkgklvisvl 95
                     +  kae  a+++g +k+ + d +ea+++ad+++ ++    +v+++++++ k++ kgkl+++++
     KKY17839.1 14 VGTMAKAEDHASAIGnAKAVT-DVSEAVASADIIFMCLGVDaAVQSTIESAVKSDVKGKLFVDCS 77
                   556778888888888577777.9***************9972578999999************85 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6.4
                    CCCHHHHHHHHC-EEEC CS
  F420_oxidored  36 pekaeelaeelgvkvta 52 
                       a++la+e+g +++ 
     KKY17839.1 228 AGHAAHLAKEAGTSMKI 244
                    56678888888744443 PP

>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.9   5.7e-06     0.013      15     108 ..      12     106 ..       4     128 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.7e-06
                 EEE-SSHHHHHHHHHTTSSSEEES-GGGGCCGSEEEE-S-GGG.HHHHHHHHHHHS-TT-EEEE--S--CHHHHHHHHHCC..GCEEEEEES--- CS
         PDH  15 igydideekaeaalelglvdeatddieavkeadivvlavPvev.ilevlkelaphlkedalitDvgsvKekvvreleellkegksfvgghPmaGt 108
                 ig+   +++ ++a ++g   ++td  eav  adi++++  v++ ++ +++   +   ++ l +D + +       ++++++ +     + P++G 
  KKY17839.1  12 IGVGTMAKAEDHASAIGNAKAVTDVSEAVASADIIFMCLGVDAaVQSTIESAVKSDVKGKLFVDCSTIHPDTTTMISKVIEAQGGHFVACPVFGA 106
                 677777788888999999999999899**************96367788887777778999*******************9777666688***98 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   4.4e-05     0.098      32      91 ..      14      74 ..      10      87 .. 0.82
   2 ?   -2.0   0.0         1   2.3e+03      23      56 ..     213     246 ..     211     252 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.4e-05
                EEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE.-S-HHHHHHHHHHHTGGG--TT-EE CS
        IlvN 32 vglregsksvkkAkeegfevltvaeavkkadvvmi.liPDelqkevyeeeiepnlkegkal 91
                vg  ++++  ++A  ++  v++v+eav++ad++++ l  D + ++ +e++++  +k +  +
  KKY17839.1 14 VGTMAKAEDHASAIGNAKAVTDVSEAVASADIIFMcLGVDAAVQSTIESAVKSDVKGKLFV 74
                667777778889999999**************97615579999999999999998877655 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1
                 HHHTT-.-EEEEE-TT-HHHHHHHHTT-EEEEHHH CS
        IlvN  23 lrdsgl.dvvvglregsksvkkAkeegfevltvae 56 
                 lrds l  v ++ ++ ++ ++ Ake+g + +++ae
  KKY17839.1 213 LRDSPLfGVDLARKDAGHAAHLAKEAGTS-MKIAE 246
                 67777657778888888888888888864.34444 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1     7e-05      0.16      45     112 ..      16      77 ..       4      93 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7e-05
                   SHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSSSS-SB-HHHHHCCHHH.S..EEEEE-- CS
  Shikimate_DH  45 tlerakelaeelkgeeiealkleelkellaeadvvisataseepilekeeveealkkrkkplllvDia 112
                   t+++a++ a+ + g+   a+++++++e++a+ad+++++ +   ++  ++ +e+a+k+  k +l+vD +
    KKY17839.1  16 TMAKAEDHASAI-GN---AKAVTDVSEAVASADIIFMCLGVDAAV--QSTIESAVKSDVKGKLFVDCS 77 
                   677888888888.44...799*******************99987..678999998866999***987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 1869.58
//
Query:       KKY17840.1  [L=696]
Description: putative checkpoint protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-47  162.6   0.0    1.6e-47  162.1   0.0    1.1  1  Pkinase         Protein kinase domain
    6.8e-19   68.2   0.0      1e-18   67.6   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    0.00027   20.9   0.1       0.19   11.6   0.1    2.3  2  APH             Phosphotransferase enzyme family
     0.0027   17.1   0.0     0.0045   16.3   0.0    1.3  1  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.017   14.8   0.0      0.031   13.9   0.0    1.4  1  RIO1            RIO1 family
      0.027   13.8   0.0      0.044   13.1   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
      0.062   12.1   0.0       0.29    9.9   0.0    1.9  2  Pkinase_fungal  Fungal protein kinase
        0.2   11.9   0.0        0.6   10.4   0.0    1.8  1  Annexin_like    Annexin-like domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.1   0.0   7.1e-51   1.6e-47       2     261 ..     351     628 ..     350     630 .. 0.83

  Alignments for each domain:
  == domain 1  score: 162.1 bits;  conditional E-value: 7.1e-51
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEE..EEESSEEEEEEE--TTEBHHHHHH.....HH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyev..feekdelylvleyveggeladlle.....rk 92 
                 ++l  +G+G++++Vy+++ +e+ ki+A+K++  e+a+  +   +  Ei +l+kl+ ++++vrly++   eek++l +++e+ e + l+++l+     ++
  KKY17840.1 351 TRLDCIGRGGTSRVYRVM-AENYKIFALKRVGLEDADPASIAGFKGEIDLLRKLEnSDRVVRLYDYevNEEKQTLSVLMEVGESD-LFRVLNqriktED 447
                 56778*************.8***********************************9*******9761156699999*****9966.8888874444444 PP

                 SS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHH..............TTSCB CS
     Pkinase  93 gslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk...ltsfvgtseYlAPEvl..............keney 174
                  +l+ + +++++k++le ++ +H+  i+H DlKp+N+L+  +g lK++DFG+a+ +  ++     ++++gt++Y++PE l              +  + 
  KKY17840.1 448 AKLDLAFTRFYWKEMLECVQAVHQYDIVHSDLKPANFLLV-QGRLKLIDFGIANAIADNTVnvhREQQIGTPNYMSPEALidtnavgglpssagRLLKL 545
                 456666999*******************************.***************9988789899**************9999988888665444788 PP

                 SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS......-HHHHHHHHHHT-SSGCCSTTHHHHHTS CS
     Pkinase 175 skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei......seeakdllkkllkkdpkkRltaeellqh 261
                 +k++DvWslG+ily++++g+ppf++ +         +q+e+i+ i ++ k+ ++ +s+       ++ +++ l+++l++d++ R+++eell++
  KKY17840.1 546 GKPSDVWSLGCILYQMVYGQPPFAHIQ---------KQFERIMSIPNP-KVIIEYPSTGvggvpvPPALIRTLRRCLQRDQTLRPSIEELLSD 628
                 ************************333.........333344444432.2222222222445566************************9975 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.0   4.6e-22     1e-18       6     257 ..     355     627 ..     350     628 .. 0.85

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 4.6e-22
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHT...C CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtl.keeateeekeelleeakimkkl.khpnivkllgvct..keepllivteyvkgGdLlkfLrkk...e 96 
                   +G+G  ++V++  ++     +    a+K +  e+a+  + + +  e+++++kl + +++v+l+   +  ++++l +++e   + dL   L+++   e
   KKY17840.1 355 CIGRGGTSRVYRVMAE-----NYKIFALKRVgLEDADPASIAGFKGEIDLLRKLeNSDRVVRLYDYEVneEKQTLSVLMEV-GESDLFRVLNQRiktE 446
                  5889999999998888.....66778999996789999999*************999*******99885344446666665.5567777777776666 PP

                  TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE............. CS
  Pkinase_Tyr  97 kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk............. 181
                  ++kl+l  +  +  ++ + ++ +++ ++vH dl   N Ll  +   k+ DfG+a++i ++   v++e++    ++m+pE+l +++             
   KKY17840.1 447 DAKLDLAFTRFYWKEMLECVQAVHQYDIVHSDLKPANFLLV-QGRLKLIDFGIANAIADNTVNVHREQQIGTPNYMSPEALIDTNavgglpssagrll 543
                  89999999999999**************************9.7789***********8888889999999***********999999**********9 PP

                  .EEHHHHHHHHHHHHHHHHTTSSGTTTTS.HHHHHHHHH.HTTEES-BBTT......SBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 182 .ftsksDvWsfGvllwEiftlgespypgl.kneevlekl.kegkrlekpek......cpeelyelmkkcweedpeeRptfselve 257
                   + + sDvWs G +l+ ++  g+ p++++ k+ e +  + + +  +e p++      +p++l + +++c+++d++ Rp+++el++
   KKY17840.1 544 kLGKPSDVWSLGCILYQMVY-GQPPFAHIqKQFERIMSIpNPKVIIEYPSTgvggvpVPPALIRTLRRCLQRDQTLRPSIEELLS 627
                  9999*************998.******997666666666466666777775444444799********************99975 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0017       3.9       8      76 ..     359     430 ..     356     446 .. 0.79
   2 !   11.6   0.1   8.5e-05      0.19     140     196 ..     446     499 ..     432     502 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0017
                 .SSCEEEEEEETT.--EEEEEE-TT.S-HHHHHHHHHHHHHHHHTT-..B--B-CTTBS-EEETTEEEEEEE- CS
         APH   8 gasnrtylvttpa.gryvlrrnppa.raaeeirrevallrlLakagv..pvPevlagdtddeeigllfaliey 76 
                 g  +r+y+v  ++ + ++l+r+  +   +++i+++  + +lL+k++   +v +++++ + +ee+ +l++l+e 
  KKY17840.1 359 GGTSRVYRVMAENyKIFALKRVGLEdADPASIAGFKGEIDLLRKLENsdRVVRLYDY-EVNEEKQTLSVLMEV 430
                 55567********99******9999888999999999999999888888899****7.566666667777775 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 8.5e-05
                 CTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 140 elldlleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                 e  +l +++++  + ++++ +++  +  ++H Dl+p N+l+   +gr+  +iDf+ a
  KKY17840.1 446 EDAKLDLAFTRFYWKEMLECVQAVHQYDIVHSDLKPANFLLV--QGRL-KLIDFGIA 499
                 4444455677779999999999999999**************..8898.89***976 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     2e-06    0.0045     127     259 ..     435     577 ..     422     631 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2e-06
  Kinase-like 127 lnkvlqkrset.hkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve......kgfaPpEllgsrg 217
                  l+ vl++r +t ++kl  +       +++  ++  +++ +vh ++++ n+ll  +g+l+l +f+      ++ v             +  pE l   +
   KKY17840.1 435 LFRVLNQRIKTeDAKLDLAFTRFYWKEMLECVQAVHQYDIVHSDLKPANFLLV-QGRLKLIDFGIANAIADNTVN-VHReqqigtPNYMSPEALIDTN 530
                  5666776666656666655555555789999*******************997.5********977666555552.2212346665566666554333 PP

  Kinase-like 218 g.....ytrknktkmthkldaWqlGlviyriwclklPltlateeake 259
                            + +k   + d+W lG   y +   + P+  ++++++ 
   KKY17840.1 531 AvgglpSSAGRLLKLGKPSDVWSLGCILYQMVYGQPPFAHIQKQFER 577
                  324566667789999*****************999999999887765 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.4e-05     0.031     104     150 ..     451     497 ..     421     507 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETTEEEE--GT CS
        RIO1 104 eeeaeelyeevleemrklykeaglvHaDLSeyNvlvdedkvviIDvs 150
                 +   ++ y++ + e  +++++  +vH DL   N l+ ++++ +ID++
  KKY17840.1 451 DLAFTRFYWKEMLECVQAVHQYDIVHSDLKPANFLLVQGRLKLIDFG 497
                 55566777777777899999*************************97 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     2e-05     0.044     113     167 ..     447     497 ..     387     511 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2e-05
         Kdo 113 ae.laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 +  l+ + +r  +k+    ++  h+ ++ H dl + n+ll q+      + liD+ 
  KKY17840.1 447 DAkLDLAFTRFYWKEMLECVQAVHQYDIVHSDLKPANFLLVQGR-----LKLIDFG 497
                 335888899999****************************9996.....9999996 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.29   6.6e+02     132     210 ..     334     417 ..     317     429 .. 0.57
   2 ?    9.9   0.0   0.00013      0.29     323     386 ..     470     526 ..     460     530 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.29
  Pkinase_fungal 132 aeeeketekleleeplarqraivgRgTt..cwrarkegergkeyvvKdsWr.......daerksEaelLkkaeergvegvarlvahed 210
                     a+++k+ + + ++  l+++ + +gRg t  ++r+  e+ +   + +K +          a+ k E +lL+k   ++   v+rl+ +e+
      KKY17840.1 334 AHSKKKRNYISINGKLFTRLDCIGRGGTsrVYRVMAENYK--IFALKRVGLedadpasIAGFKGEIDLLRKL--ENSDRVVRLYDYEV 417
                     4555666667777666666666677643238888776655..345554432111101012234577777777..66777777776664 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00013
  Pkinase_fungal 323 flkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievl 386
                     + +  i+H D    N l++      + +  LiD+ +a  ++d++ + ++++++GT+++m+ e l
      KKY17840.1 470 H-QYDIVHSDLKPANFLLV------QGRLKLIDFGIANAIADNTVNVHREQQIGTPNYMSPEAL 526
                     5.889**************......88999***********98888888**********98776 PP

>> Annexin_like  Annexin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00027       0.6       8      61 ..     401     452 ..     396     468 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
  Annexin_like   8 kaeeiadkiynlynGytsGkeqqtayntlmelgalllyrvlthynqayekfgel 61 
                   +  e +d++  ly+ y    e+qt   +lme+g + l+rvl++  ++ ++  +l
    KKY17840.1 401 RKLENSDRVVRLYD-YEVNEEKQT-LSVLMEVGESDLFRVLNQRIKTEDAKLDL 452
                   55688999****97.888888886.689************99865555543333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 4276.20
//
Query:       KKY17841.1  [L=121]
Description: putative aconitate hydratase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00037   20.7   1.6    0.00093   19.4   1.6    1.7  1  Ribosomal_L21p  Ribosomal prokaryotic L21 protein
     0.0048   16.7   0.3     0.0077   16.1   0.3    1.2  1  CutA1           CutA1 divalent ion tolerance protein
  ------ inclusion threshold ------
      0.023   14.7   0.0      0.026   14.5   0.0    1.2  1  PGC7_Stella     PGC7/Stella/Dppa3 domain


Domain annotation for each model (and alignments):
>> Ribosomal_L21p  Ribosomal prokaryotic L21 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   1.6   1.5e-07   0.00093      50     100 ..      47      99 ..       2     100 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.5e-07
                     TSSSESS..TCEEEEEEEEEE---EEEEEEETTTTEEEEEEE--EEEEEEEEE CS
  Ribosomal_L21p  50 Gaplveg..akVeaevvehgkgkkiivfkkkrrknyrrkqghRqkytklrItk 100
                      +p++++    ++a+v+    g+++i  k krr++  ++ + ++kyt+l+I +
      KKY17841.1  47 ENPYLDErlFVCRARVIGVDTGPMMIKEKTKRRQRRVKTVKSKHKYTVLKIME 99 
                     4667765333699**************************************87 PP

>> CutA1  CutA1 divalent ion tolerance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.3   1.3e-06    0.0077      53      88 ..      70     105 ..      66     110 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.3e-06
                 EEEEEEGGGHHHHHHHHHHHSSSSS-EEEEEEESEE CS
       CutA1  53 lliktreekveelekrvkelhpyevpeiialpieag 88 
                 ++ik ++++ ++ +k+vk+ h+y+v +i+++++++ 
  KKY17841.1  70 MMIKEKTKRRQRRVKTVKSKHKYTVLKIMEVKVKSL 105
                 89*****************************99865 PP

>> PGC7_Stella  PGC7/Stella/Dppa3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.4e-06     0.026      65      95 ..      70     100 ..      18     108 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.4e-06
  PGC7_Stella  65 qyreektlqerrweRtllsqrKkaflkhirr 95 
                   +  ekt++++r+++t+ s+ K+++lk+++ 
   KKY17841.1  70 MMIKEKTKRRQRRVKTVKSKHKYTVLKIMEV 100
                  56679***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       907  (0.0505884); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 752.98
//
Query:       KKY17842.1  [L=261]
Description: putative ribosome biogenesis protein nsa2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-48  163.9   0.2    4.4e-48  162.9   0.2    1.4  1  Ribosomal_S8e  Ribosomal protein S8e
  ------ inclusion threshold ------
        0.1   11.5   2.0       0.14   11.1   2.0    1.2  1  PA26           PA26 p53-induced protein (sestrin)
        2.8    6.1   9.8        3.3    5.9   9.8    1.0  1  Red1           Rec10 / Red1
        3.3    8.3   7.1          5    7.7   7.1    1.2  1  SPATA3         Spermatogenesis-associated protein 3 family
        5.4    6.0   6.1        7.2    5.6   6.1    1.1  1  Pannexin_like  Pannexin-like TM region of LRRC8


Domain annotation for each model (and alignments):
>> Ribosomal_S8e  Ribosomal protein S8e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.9   0.2   1.2e-51   4.4e-48       3     137 .]      32     260 ..      30     260 .. 0.96

  Alignments for each domain:
  == domain 1  score: 162.9 bits;  conditional E-value: 1.2e-51
                    XBXXCCCSEESSTEEXXXSSXXX..................................................CCSBXXXXXXXEE.......... CS
  Ribosomal_S8e   3 isrdskhkrkltGgkakllrkkr..................................................kielgrkekatkl.......... 38 
                     ++ s+++++l+G++akl++kkr                                                  +i+++r+eka+k+          
     KKY17842.1  32 GHKASESAQNLRGLRAKLHQKKRhaekiqmkkqikaqeernvksaapnepsstplpnylldrsqatnakalssAIKNKRAEKAAKFavplpkvkgi 127
                    6899**********************************************************************************9999999876 PP

                    .SSHEEEEEEETTCEEEE...............................EEESESEEEEEETTTTEEEEEEEEEEECSSSTCHHHHTTC--TTEEE CS
  Ribosomal_S8e  39 .gaervkvvrvrgGkrkk...............................ralrlkkanvthpeekvtkklkIlgVkknpsnneyvrlgvltKgaii 102
                     ++e++kvv  ++Gk+                                 ++lr+kkanvthpe++vt++l+I++Vkknp+n++y++lgvltKg+++
     KKY17842.1 128 sEEEMFKVV--KTGKKTAkkswkrmitkptfvgpdftrrpvkyerfirpMGLRYKKANVTHPELGVTVQLPIISVKKNPQNPMYTQLGVLTKGTVL 221
                    55*******..666554456**************************************************************************** PP

                    EEESHHHHHHHHTTEEE....EEEESEHHHHSSEEEEEE CS
  Ribosomal_S8e 103 evdvseLgevtqsgkvv....AqvtsrPgqdGcvnavlL 137
                    ev+vseLg+vt++gkvv    Aq+t++P++dGcvnavlL
     KKY17842.1 222 EVNVSELGLVTAGGKVVwgkfAQITNNPENDGCVNAVLL 260
                    **************************************8 PP

>> PA26  PA26 p53-induced protein (sestrin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.0   3.8e-05      0.14     176     293 ..      46     167 ..      16     174 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.8e-05
        PA26 176 epeldlesskklksasasanekedsseeeeeelerkaaaeaeaevealmermkklqeeedeee.easeeelserf.......ekeeseslllaaadaee 266
                 + +l+++++++ k ++++   + +++ee++ +++  +  +++   ++l++r ++++ ++ +++ + +++e++++f       +  ++e+++ ++ ++ +
  KKY17842.1  46 RAKLHQKKRHAEKIQMKK---QIKAQEERNVKSAAPNEPSSTPLPNYLLDRSQATNAKALSSAiKNKRAEKAAKFavplpkvKGISEEEMFKVV-KTGK 140
                 344444444333333332...2333333333333333334445559999999999999988775566777788889999876444444444443.4678 PP

        PA26 267 aavasdlsryvedpefgyqdFarrgee 293
                 ++++++ +r +++p+f   dF+rr+ +
  KKY17842.1 141 KTAKKSWKRMITKPTFVGPDFTRRPVK 167
                 88889*******************877 PP

>> Red1  Rec10 / Red1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   9.8   0.00091       3.3     471     613 ..      12     156 ..       7     202 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.00091
        Red1 471 kktkkklksskqkklknlkpvkevkssdvknkksk...pktpsckvknkqlkvplkseekegekqtekdse....eltigeekekkqeeklaeetnetk 562
                 k+ +k+l++  + +++  ++  ++ +s ++  +++   +++++   k++ +k   ++ee++ + +++++ +    ++   +  ++++++ l + +++++
  KKY17842.1  12 KQHGKRLDHDERVRKREAREGHKASESAQNLRGLRaklHQKKRHAEKIQMKKQIKAQEERNVKSAAPNEPSstplPNYLLDRSQATNAKALSSAIKNKR 110
                 34789**************************99996664444455555556666666677777776665445555555566677777888888888888 PP

        Red1 563 aeinkkvkkkpetakkvldtshkakrslkksiwkellkekswkeellepqp 613
                 ae+ +k  ++  + k++++++  ++ ++ k+++k++     wk+  ++p  
  KKY17842.1 111 AEKAAKFAVPLPKVKGISEEEMFKVVKTGKKTAKKS-----WKRMITKPTF 156
                 888888888888888888888888888888888877.....7777766653 PP

>> SPATA3  Spermatogenesis-associated protein 3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   7.1    0.0014         5       4     106 ..      15     124 ..      12     129 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0014
      SPATA3   4 vkkkksear.rrrdstsqqassestsqqpssesapqqpesestpsktssestsqqasp..estpqqpasqalpa....pekrassrslvsqdtetkaas 95 
                 +k+   + r r+r++   + +ses+++     ++ +q + ++   + + ++++q+ +    ++p++p+s +lp+      + +++++l s  ++ +a  
  KKY17842.1  15 GKRLDHDERvRKREAREGHKASESAQNLRGLRAKLHQKKRHAEKIQMKKQIKAQEERNvkSAAPNEPSSTPLPNylldRSQATNAKALSSAIKNKRA-E 112
                 56654444438999************99988888777777777666666666665554225566777777766521114555566667665555555.5 PP

      SPATA3  96 rsrk.agpltra 106
                 ++ k a+pl ++
  KKY17842.1 113 KAAKfAVPLPKV 124
                 555549998765 PP

>> Pannexin_like  Pannexin-like TM region of LRRC8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   6.1     0.002       7.2     196     262 ..      36     111 ..      10     118 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.002
  Pannexin_like 196 a.........skslssesssseesseeesallkkkssvkskaekkvvekkssvsvLdkkegeqAkalfekvrkfra 262
                    +         +++l ++++++e+ + +++ + +++ +vks+a ++ + ++    +Ld++++ +Akal   +++ ra
     KKY17842.1  36 SesaqnlrglRAKLHQKKRHAEKIQMKKQIKAQEERNVKSAAPNEPSSTPLPNYLLDRSQATNAKALSSAIKNKRA 111
                    1222233443445555555666666677777777777888777777777888899************999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1804  (0.100619); expected 358.6 (0.02)
Passed bias filter:                      715  (0.0398795); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.33s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 1573.39
//
Query:       KKY17843.1  [L=816]
Description: putative xylulose-5-phosphate phosphoketolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.1e-170  565.5   0.0   5.2e-170  565.1   0.0    1.1  1  XFP_N     XFP N-terminal domain
    2.3e-82  275.3   0.0    3.7e-82  274.7   0.0    1.3  1  XFP_C     XFP C-terminal domain
    1.9e-80  268.7   0.0    2.9e-80  268.1   0.0    1.3  1  XFP       D-xylulose 5-phosphate/D-fructose 6-phosphate phosp


Domain annotation for each model (and alignments):
>> XFP_N  XFP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  565.1   0.0  8.7e-174  5.2e-170       3     363 ..      35     395 ..      33     396 .. 0.99

  Alignments for each domain:
  == domain 1  score: 565.1 bits;  conditional E-value: 8.7e-174
       XFP_N   3 seeelkkldkywraanylavgliylkdnpllreplkeedvkarllGhwGtvpGlsflyahlnriikkydqnmlyvvGPGhGgpalvaasylegsysely 101
                 + ee++  ++y++a+ yl++g++yl++npll+e l + ++k r lGhwG+ +G+ f y h nr+ikkyd++ ++++GPGhG+pa+++++yleg+yse+y
  KKY17843.1  35 TAEEIRLYNEYFQASLYLCLGMLYLQKNPLLKEKLDPSHIKPRSLGHWGSDAGQIFTYMHFNRLIKKYDLDAIFISGPGHGAPAVLSQAYLEGTYSEVY 133
                 678899999****************************************************************************************** PP

       XFP_N 102 peiskdeeGlkklfkqfsfPGGipshvaaetPGsiheGGelGyalshayGavldnPdlivacvvGdGeaetGPlatswhsnkflnPaedGavlPileln 200
                 p+ s+d eGl+++fkqfsfPGG++sh+++etPGs+heGGelGy++sha+G+v dnPdli +++vGdGe+etGPla+swhs+kflnP++dGavlP+l+ln
  KKY17843.1 134 PDKSEDSEGLQRFFKQFSFPGGVGSHATPETPGSLHEGGELGYSISHAFGTVYDNPDLISVTMVGDGESETGPLAASWHSTKFLNPITDGAVLPVLHLN 232
                 *************************************************************************************************** PP

       XFP_N 201 GykisnptilarisdeelkklfeGlGyepafvededteslhkllaevldkaveeihdiqkearsneeasrPkwPmiilrtPkGwtgPkyvdGkkvegsf 299
                 Gyki+npt+laris+eel++lf G+G++p+fve++d es+h+++a++++k+v ei+++qk+ar++++a rP+wPmiilr+PkGwtgP+ vd + +eg++
  KKY17843.1 233 GYKINNPTVLARISHEELEALFVGYGWTPYFVEGSDVESMHQAMAATFEKCVTEIKAVQKKARESKKAFRPRWPMIILRSPKGWTGPRKVDSHYLEGFW 331
                 *************************************************************************************************** PP

       XFP_N 300 rahqvPlalarentaklellkewlksykpeelfdedgslkeelkelaPkgekrlaanpeanggl 363
                 r+hq+Pl+ ar+n+++l +l++w+ksy+pe +fd+ g+lk+elk+l+P+g+kr++anp+angg+
  KKY17843.1 332 RSHQIPLPDARTNPEHLLVLESWMKSYQPEIVFDATGKLKPELKALTPEGNKRMSANPVANGGI 395
                 **************************************************************97 PP

>> XFP_C  XFP C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.7   0.0   6.2e-86   3.7e-82       1     202 []     613     814 ..     613     814 .. 1.00

  Alignments for each domain:
  == domain 1  score: 274.7 bits;  conditional E-value: 6.2e-86
       XFP_C   1 KqpepqylsldeAeehckkGasiwewastdegeepdvvlagiGdeptlEvlaAvellreelpelkvrvvnvvdLmklqeesehphglsdeefdelFtkd 99 
                 Kq++ qyl++++A ehc+kGa+iw+was+d+g epdvv+a++Gd+pt+E+laA++llre +p++k+r+vnvvdL+kl +e+eh+hglsd e+++lFt d
  KKY17843.1 613 KQNHLQYLDMEAAVEHCTKGAGIWKWASNDDGFEPDVVMASCGDVPTHESLAATALLREYVPDIKIRFVNVVDLFKLIAEKEHSHGLSDVEYSALFTYD 711
                 9************************************************************************************************** PP

       XFP_C 100 kpvifnfHgYptlikrLlykrknherlhvrgYkeeGtttTpfdmlvlnevdRfhlaidaikrveklkkkaaelaeklkekleehkkyireegeDlpeve 198
                 kpvifnfH+Yp+li+rL+y+rk ++++ v+gY+e+G+++Tp++++++n++dRf+lai+ai+rv++l+++a++++e++ +++ ++++++ e g D ++ +
  KKY17843.1 712 KPVIFNFHSYPWLIHRLTYQRKGQSNMYVTGYREKGNINTPLELAIRNGTDRFSLAIAAIDRVPRLHNTASAVRESFLNEQIAARNHAWEFGIDDKKYT 810
                 *************************************************************************************************** PP

       XFP_C 199 dwkw 202
                 +wkw
  KKY17843.1 811 EWKW 814
                 **99 PP

>> XFP  D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.1   0.0   4.8e-84   2.9e-80       2     176 .]     425     602 ..     424     602 .. 0.96

  Alignments for each domain:
  == domain 1  score: 268.1 bits;  conditional E-value: 4.8e-84
         XFP   2 algkylrdvlkknpenfrifgPDetaSnrLnavfevtkrqwqeeieee...deelaaeGrvievlsEhlcegllegYlltGrhglfasyEaflrivdsm 97 
                 +lgk++rd++k+np+nfr fgPDet+Sn+L a++e+ k+ w  ++  e     +la  Grv+e+lsEh++eg+legYll+Grhg+++syE f++i+dsm
  KKY17843.1 425 QLGKFFRDIIKSNPTNFRAFGPDETESNKLGAMYEAGKKVWLGDYFAEdedGGNLAFAGRVMEILSEHTVEGWLEGYLLSGRHGFLNSYEPFIHIIDSM 523
                 79*****************************************99866132346777****************************************** PP

         XFP  98 vnqhakflkkakelewrkdvaslnllltstvwrqdhNgfsHqdpglidavlnkkaevvrvylPpDaNtllsvldhclrs 176
                 vnqh+k+++k++e+ewr ++asln+llt+tvwrqdhNgf+Hqdpg++d+v+nk++evvr+ylPpD N+lls++dhclrs
  KKY17843.1 524 VNQHCKWIEKCNEVEWRVKIASLNILLTATVWRQDHNGFTHQDPGFLDVVANKSPEVVRIYLPPDGNCLLSTADHCLRS 602
                 *****************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (816 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.50
# Mc/sec: 4921.38
//
Query:       KKY17844.1  [L=209]
Description: putative metallo-beta-lactamase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0056   16.2   0.0     0.0084   15.6   0.0    1.3  1  Lactamase_B_5  Metallo-beta-lactamase superfamily


Domain annotation for each model (and alignments):
>> Lactamase_B_5  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.7e-07    0.0084      26     134 ..      70     184 ..      57     203 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.7e-07
  Lactamase_B_5  26 lawirpdgnilidpvalsnh.dwnhleslggvawivltnsdhlraakeiaelty.....akiagpaaek.etfpiacdrwlsdgdelvsglkvlel 114
                    +    p+gnil d ++l ++   ++++slgg a +v++  ++  +  + ++        a+  +   e+ +t  ++ + + ++ +e+v+g++ +  
     KKY17844.1  70 ILLQTPHGNILWDLITLLDQeTVDKINSLGGLAAMVISHPHYYTTYADWSRTFScpvyiAQADSQWLERtDTPGLNLQLFNEQHKEIVPGVTAII- 164
                    55567**********98765168*************99887766655554433211001222233334314444666667777778888877764. PP

  Lactamase_B_5 115 kgsktpgelallleettlit 134
                     g +  g + l  e t +i+
     KKY17844.1 165 CGGHFDGSIVLHWERTLFIA 184
                    45556666666665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1507.80
//
Query:       KKY17845.1  [L=459]
Description: putative pol ii transcription elongation factor subunit cdc73 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-55  187.0   0.0    2.7e-55  186.4   0.0    1.3  1  CDC73_C   RNA pol II accessory factor, Cdc73 family, C-termin


Domain annotation for each model (and alignments):
>> CDC73_C  RNA pol II accessory factor, Cdc73 family, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.4   0.0   1.5e-59   2.7e-55       2     156 ..     274     448 ..     273     449 .. 0.98

  Alignments for each domain:
  == domain 1  score: 186.4 bits;  conditional E-value: 1.5e-59
     CDC73_C   2 kkkPiIlvpssasslltlsnvksfledgkyvppdekkkeaskaenevsisrklkkiad.......skkvrflvvdspekltkedWerVvAVfvtgqewq 93 
                 + +Pi+l+++sassll+lsn+ksfl +g++vppd+++ ++++++n ++i+r+l+++++        +++rf++vdspe +++++W+rVvAVf+tgq+wq
  KKY17845.1 274 RSDPIVLLSPSASSLLRLSNIKSFLDTGHFVPPDHPNLASHSGTNLLHITRQLRSLDSmlppgttPRPYRFIIVDSPEMFKPDYWSRVVAVFTTGQTWQ 372
                 789************************************************9999988******99**************99***************** PP

     CDC73_C  94 fksykwsepaelFkkvkgvyvkyeeeevpeevkgwn..Vkslqlsr...........skRhrDravveefwealee 156
                 fksykw++p++lFk+v+g++v++++eevp+ v+gw+  V  +q++r           +kR+rDr+vve++w a+e 
  KKY17845.1 373 FKSYKWRDPPDLFKNVLGIFVGWRGEEVPAVVRGWGrgVACFQVERwdekshgdgraEKRWRDREVVEGIWGAIEG 448
                 **************************************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2918.12
//
Query:       KKY17846.1  [L=502]
Description: putative developmental regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.4e-34  116.2   0.2    3.3e-33  114.5   0.0    2.0  2  RGS           Regulator of G protein signaling domain
    4.8e-24   84.2   0.0    7.4e-19   67.6   0.1    3.4  3  DEP           Domain found in Dishevelled, Egl-10, and Plecks
  ------ inclusion threshold ------
       0.16   12.0   0.0        5.2    7.1   0.0    2.4  2  Replic_Relax  Replication-relaxation


Domain annotation for each model (and alignments):
>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.66     4e+03      65     100 ..     249     286 ..     234     289 .. 0.60
   2 !  114.5   0.0   5.4e-37   3.3e-33       1     116 [.     327     466 ..     327     468 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.66
                 SSTS-HHHHHHHHH...HHCSSSTTTTTTHHHHHHHHHH CS
         RGS  65 elnidkklreelek...rlekeqpsrklfeeaqeevfel 100
                 e++i++ l+  + +   ++++ +p++ +f+  +++++ l
  KKY17846.1 249 EMFIKHGLMWAVVEdkvYMHQ-NPKEIVFQPTKNAIYAL 286
                 444445444333221113333.78888888888888865 PP

  == domain 2  score: 114.5 bits;  conditional E-value: 5.4e-37
                 -HHHHHTSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTS.............SHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCSS... CS
         RGS   1 sleslledqpgrslFreFlesefseenlsFwlaveefkka.............keqeelkkkakeIyneylapsspkelnidkklreelekrleke... 83 
                 +l+ +l+d+++r lFreFl+ + +eenlsF+l+++ef ++             ++ ++++++a+ Iyn++lap+sp+elnid++lr++l++r++ +   
  KKY17846.1 327 RLNTILQDPALRLLFREFLRFSLCEENLSFYLEIKEFTSNyhaadkakaftrpDSVRDTLAAAYGIYNAFLAPGSPCELNIDHSLRNSLASRMTRAvgd 425
                 5899***********************************************99999999999************************************* PP

                 ........STTTTTTHHHHHHHHHHHHHHHHHHHHTSHHHH CS
         RGS  84 ........qpsrklfeeaqeevfellekdsypkFlkselyl 116
                         ++  +lfe aq++vf+l+++ds+pkF+k++ y 
  KKY17846.1 426 edsmlsslREVVELFEIAQNSVFKLMSSDSVPKFVKDPRYI 466
                 **************************************995 PP

>> DEP  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0048        29       2      25 ..      23      46 ..      22      50 .. 0.90
   2 !    7.7   0.0    0.0006       3.6      36      58 ..      81     103 ..      69     109 .. 0.86
   3 !   67.6   0.1   1.2e-22   7.4e-19       1      71 [.     205     285 ..     205     286 .. 0.96

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0048
                S-SCEEECTTEEESSE-HHHHHHH CS
         DEP  2 vklkdrrkhlktypncftGseavd 25
                ++l+ +r++++++ ++f+ +eav 
  KKY17846.1 23 LPLSPHRVRFSKVDHTFSSEEAVN 46
                68899*****************96 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0006
                 HHHHHHHHHHHHHCTSCECSSSS CS
         DEP  36 reeAvalgqlLldqgliehvedk 58 
                  e A +++q++++ ++ie++++k
  KKY17846.1  81 KEMARSVCQRFMEARFIEPADGK 103
                 5899***************9876 PP

  == domain 3  score: 67.6 bits;  conditional E-value: 1.2e-22
                 SS-SCEEECT.TEEESSE-HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHCTSCECSSSSHCC.........--SSSSS-EE CS
         DEP   1 gvklkdrrkh.lktypncftGseavdWLldnldiedreeAvalgqlLldqgliehvedkhqe.........FrdskqafYq 71 
                 gvk++++rk   +++ n+ftG++a+dWL+d+++++dr+e+ +++++++++gl++ v +++ +         F+++k+a+Y 
  KKY17846.1 205 GVKMAKERKIfDRVVTNSFTGKAATDWLMDCCTTIDRRETNEMAEMFIKHGLMWAVVEDKVYmhqnpkeivFQPTKNAIYA 285
                 799999999889********************************************9999999999**************6 PP

>> Replic_Relax  Replication-relaxation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.021   1.2e+02      55      73 ..     111     126 ..      67     175 .. 0.70
   2 ?    7.1   0.0   0.00088       5.2      55      93 ..     280     317 ..     264     383 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.021
  Replic_Relax  55 epyvYaLtpkGarllaaqr 73 
                   ++++++Lt kG  +l   +
    KKY17846.1 111 KGAIWQLTAKGVHVL---H 126
                   689*********999...2 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00088
  Replic_Relax  55 epyvYaLtpkGarllaaqra...epeprskrdrrereassrf 93 
                   ++++YaLt kG+rl     +   +++ + ++++re+++ +r+
    KKY17846.1 280 KNAIYALTDKGQRLC----GwitREKSAGSSETREARPENRN 317
                   689************....44433333455555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 3181.84
//
Query:       KKY17917.1  [L=804]
Description: putative dna methyltransferase 1-associated protein dmap1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-29   99.4   4.6    2.9e-28   97.9   4.6    1.8  1  SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
    4.6e-07   29.9   1.0    4.6e-07   29.9   1.0    2.2  2  DMAP1            DNA methyltransferase 1-associated protein 1
     0.0017   18.6   0.6      0.007   16.6   0.6    2.1  1  Myb_DNA-bind_6   Myb-like DNA-binding domain
     0.0065   16.6   0.3       0.11   12.7   0.1    2.6  2  Myb_DNA-binding  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   4.6   6.6e-32   2.9e-28       3      79 ..     149     258 ..     147     259 .. 0.97

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 6.6e-32
  SANT_DAMP1_like   3 FakfnkkvevpeytdeeYeellkeedWtkeetdyLfdlckeydlrfvviaDryelek.................................kkkr 63 
                       +kfn+kv +p+ytde+Y++++k++ WtkeetdyL++lc++ydlr++viaDr+++++                                  ++r
       KKY17917.1 149 MEKFNVKVPIPKYTDEQYNQHMKSDAWTKEETDYLIQLCRDYDLRWFVIADRWNFNPekdmkaaeeiaihddemapesttsstepkkprwPQSR 242
                      58*****************************************************99*********************************99** PP

  SANT_DAMP1_like  64 sledlkeryYsvarkl 79 
                      s+e+lk+ryY+va+++
       KKY17917.1 243 SIEQLKSRYYAVAAAM 258
                      *************988 PP

>> DMAP1  DNA methyltransferase 1-associated protein 1 (DMAP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.4      0.78   3.5e+03       1      12 [.     307     318 ..     307     322 .. 0.90
   2 !   29.9   1.0     1e-10   4.6e-07      46     153 ..     420     528 ..     393     533 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.78
       DMAP1   1 EEemLlaElrki 12 
                 EE  LlaEl++i
  KKY17917.1 307 EERLLLAELKRI 318
                 8999******99 PP

  == domain 2  score: 29.9 bits;  conditional E-value: 1e-10
       DMAP1  46 skkkkleqkkekeksvesetaesagikFpdfkssGvslRsqr.mklPasvgqkKlKaieqlleelkvdln.pvpteeivqafNelrsdlvllyelksal 142
                  ++kk ++  + + + +++++++ g+   d  +sGvs+R ++ +kl ++ +q ++ +++++l+el++  +  +pte+++++f  l + + ll ++++ +
  KKY17917.1 420 PPQKKGQAATNVR-KLTQAEEAKFGVTHHDRLTSGVSFRHEKvIKLTQAKSQAQTLKLQSALTELQIPPRlVMPTEKVCREFERLIASVNLLLDVRKLH 517
                 2566665554444.455566779****************98846***********************987369************************** PP

       DMAP1 143 atcefelqslr 153
                 ++++ e++ l 
  KKY17917.1 518 EKTKSEVEVLE 528
                 *9999999885 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.6   1.6e-06     0.007       1      28 [.     175     202 ..     175     215 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.6e-06
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealn 28 
                     Wt+eE++ L++l+++y   W  Ia+  n
      KKY17917.1 175 WTKEETDYLIQLCRDYDLRWFVIADRWN 202
                     *********************9998755 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   2.5e-05      0.11       3      29 ..     174     200 ..     172     210 .. 0.92
   2 ?    0.9   0.0      0.12   5.5e+02      32      43 ..     241     252 ..     236     254 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.5e-05
                      SSBHHHHHHHHHHHHHHTTCHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhGnrWkkIaer 29 
                      +Wt+eE + L+++++ +  rW  Ia+r
       KKY17917.1 174 AWTKEETDYLIQLCRDYDLRWFVIADR 200
                      8***********************987 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.12
                      SS-HHHHHHHHH CS
  Myb_DNA-binding  32 gRtekqcrsrwr 43 
                      +R+ +q +sr++
       KKY17917.1 241 SRSIEQLKSRYY 252
                      8*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1508  (0.0841095); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                       132  (0.00736237); expected 17.9 (0.001)
Passed Fwd filter:                        61  (0.00340231); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.68u 0.43s 00:00:02.11 Elapsed: 00:00:00.62
# Mc/sec: 3893.75
//
Query:       KKY17918.1  [L=195]
Description: putative endosomal cargo receptor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-35  122.2   0.0    2.7e-35  122.0   0.0    1.0  1  EMP24_GP25L  emp24/gp25L/p24 family/GOLD


Domain annotation for each model (and alignments):
>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0   0.0   1.5e-39   2.7e-35      35     181 ..      23     189 ..       3     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: 122.0 bits;  conditional E-value: 1.5e-39
  EMP24_GP25L  35 aaldvdlsvkdpdgngerlvkkkdreseg........dfsftakesgeykvCfdnsfstkss..............kkvsfdievgseasdykdsakk 110
                   +l++  +v+++++n++r+v++  + +++        +f+f a++sg +++Cf+ +   +++              +++++di vg+ +  + +s +k
   KKY17918.1  23 TELGIITTVEETFDNDHRIVSQAASYDSSksadswysKFTFAAADSGSHRICFTATGPASQTsgwfssgnggypggVRLTVDIVVGETS--KIESEDK 118
                  56888999**************666555366778888*******************9988779**********************9875..5688999 PP

  EMP24_GP25L 111 ekletleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavlqvyyLkrfF 181
                   k++++ +++k l+ +l++i+req ++rere+++rd++e tn rvv+w+++ql+vl +++++q+ +L+ fF
   KKY17918.1 119 GKIDEMATKVKDLNGRLTDIRREQVFQREREAEFRDQSEATNARVVRWTLIQLGVLGITCAWQLSHLRAFF 189
                  **********************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       739  (0.0412181); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1426.26
//
Query:       KKY17919.1  [L=522]
Description: putative l-ascorbate oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-27   94.9   0.1    9.4e-27   94.1   0.1    1.4  1  Cu-oxidase    Multicopper oxidase
    6.6e-23   81.0   3.6      2e-22   79.4   0.4    2.8  2  Cu-oxidase_2  Multicopper oxidase
    7.6e-15   55.0   0.1    7.6e-15   55.0   0.1    2.5  3  Cu-oxidase_3  Multicopper oxidase


Domain annotation for each model (and alignments):
>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.1   1.6e-30   9.4e-27       3     156 ..      85     241 ..      83     243 .. 0.88

  Alignments for each domain:
  == domain 1  score: 94.1 bits;  conditional E-value: 1.6e-30
                 EEEEEEEETCBCTTSCBC.HSSCHCHHHHHTT--SEEEETTBSS.......C..TTTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB.-EEEEEET CS
  Cu-oxidase   3 yvitlsDwyhkdakelekellasgkapadtppvpdavlingkggfnatladk..dgaslatltvepgktyrlriinvsaddslnfsIeGH.kltVvevD 98 
                  +i l+D+y+k+++++e+ lla+   p  + ++ +a+++ngk+g +a + ++   ++++a+++v+pg  yr+r i  +a + +++ Ie+H ++t++e+D
  KKY17919.1  85 KIIQLTDYYNKTDTTIEEGLLAN---PFVWSGETNALVLNGKSGTKAYNETTvdSTCAPAIIKVKPGLAYRFRWIGSTAISLITLGIEDHpNMTIIEAD 180
                 6899***********99966665...999************998776554434588******************************************* PP

                 CETTSEEEESCEEE-TTEEEEEEEEE-S.S......SEEEEEEEEGSSSCHHHHTTSEEEEEEEE CS
  Cu-oxidase  99 gvyvepvevdsldIavGqrysvlvtanq.a......pgnYwivasgrsnlieafengtaaailry 156
                 g++++p+e d l++a+Gqr+s l++a+  +      + +Yw+++    +++e++ n+t++a+l y
  KKY17919.1 181 GHFTQPFESDHLQVASGQRFSTLFQAKSlSeirstnKTTYWLQM----ENRERPANVTGYALLIY 241
                 **************************7654566777899*****....66888899999999987 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.2     0.057   3.4e+02     108     120 ..      47      59 ..       7      67 .. 0.80
   2 !   79.4   0.4   3.4e-26     2e-22      19     129 ..     346     475 ..     329     479 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.057
                   .S-EEEEEEESSH CS
  Cu-oxidase_2 108 dnpGvwllHCHil 120
                    ++G +++H+H+ 
    KKY17919.1  47 GDAGSYFYHSHVG 59 
                   37899*****985 PP

  == domain 2  score: 79.4 bits;  conditional E-value: 3.4e-26
                   EEEEE..ETC.CTTTSSEEEEEETTEEEEEEEEE-SSS.....-EEEEESS-EEEEEEEEECC.CCCCTCCSSGCCGSSCBSEEEE-T......... CS
  Cu-oxidase_2  19 aseit..nge.efsentnvitlpkgevveiviqnntkl.....pHPfHlHGhdfqvlgrgpgn.dpeedpksynlenpvrrdtvqvpp......... 97 
                   +++ +  n+   ++++t v+ +  +e+++iv  n++        HPfH HG + + lg+g+g+ dp  +++++++ +pv rdt++++          
    KKY17919.1 346 NYTAAllNPLgAWDPTTLVFPALLNETLDIVWLNSNGPsggwdIHPFHAHGGHYFDLGSGNGTyDPVSNEERFKTYTPVLRDTTMLYRyaasgspnt 442
                   333336788889*******************9998777677778*******************9**********************87777777788 PP

                   .TEEEEEEEES.S-EEEEEEESSHHHHHTT-EE CS
  Cu-oxidase_2  98 .ggwvairfkadnpGvwllHCHilwHldqGmal 129
                     gw a r+++dnpGvw++HCHil H+++Gm++
    KKY17919.1 443 tAGWRAWRVQVDNPGVWMMHCHILAHMTMGMST 475
                   89*****************************86 PP

>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.1   1.3e-18   7.6e-15      47     115 ..       4      72 ..       1      76 [. 0.92
   2 ?   -2.0   0.1      0.57   3.4e+03      54     102 ..     395     438 ..     389     452 .. 0.65
   3 ?   -1.7   0.1      0.48   2.9e+03      83     112 ..     449     477 ..     439     480 .. 0.82

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 1.3e-18
                   S-B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S.-SEEEEEEE--TTHHHTT-EEEEEEE CS
  Cu-oxidase_3  47 entsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkq.qagtlwYhshlslqqaaGlaGaiiie 115
                    n+++hwhGl q++ +++DG p+v+q pi+p + f+y+++ +   ag+++Yhsh+ +q a + +Ga+i++
    KKY17919.1   4 LNLTVHWHGLTQKTAPFSDGSPQVSQWPIPPLHFFDYEIRPDIgDAGSYFYHSHVGFQ-AITATGALIVD 72 
                   589************************************998668************9.88999999997 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.57
                   ET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEEEEEE--TT CS
  Cu-oxidase_3  54 hGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtlwYhshlsl 102
                   hG +  +     G   +t +p++ +e+f+   +v +   t++Y   +s+
    KKY17919.1 395 HGGHYFDL----GSGNGTYDPVSNEERFKTYTPVLR-DTTMLYRYAASG 438
                   44444444....777778888888888877777777.777777655554 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.48
                   EEEE--S-SEEEEEEE--TTHHHTT-EEEE CS
  Cu-oxidase_3  83 yrftvkqqagtlwYhshlslqqaaGlaGai 112
                   +r++v++  g  + h h+ ++ ++G+ +++
    KKY17919.1 449 WRVQVDN-PGVWMMHCHILAHMTMGMSTIW 477
                   6788888.8999999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 4040.38
//
Query:       KKY17920.1  [L=247]
Description: putative mitochondrial cation [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-85  286.7   0.8    2.1e-85  286.5   0.8    1.0  1  Mtc       Tricarboxylate carrier


Domain annotation for each model (and alignments):
>> Mtc  Tricarboxylate carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.5   0.8   1.2e-89   2.1e-85      78     312 .]       1     247 []       1     247 [] 0.98

  Alignments for each domain:
  == domain 1  score: 286.5 bits;  conditional E-value: 1.2e-89
         Mtc  78 msafvpvnllitggmltpykttpavifwqwanqsfnaavnytNrnasspistsqlltsyvaAttaavgtalglnsllkrlkk.skatksllgrlvPfaa 175
                 ms+fv++nl++t+gmltp  +t+++++wq++nqs+n+a+n +N+n+s+p+sts++++sy++A++a++++algln+l++rlk+ s+atk +lgrlvPfaa
  KKY17920.1   1 MSCFVLSNLVVTAGMLTPGLGTTGTLLWQITNQSLNVAINNANANKSTPLSTSTMVKSYFVAVSASCSVALGLNALVPRLKRvSPATKIVLGRLVPFAA 99 
                 9*******************************************************************************999**************** PP

         Mtc 176 vaaancvNiplmRqkelqkGIeVtdeegn..............elgkSkkaAkkAisqvalsRvlmaapamvlpplimnalekkkflkkrprlaalpiq 260
                 va+a+++N++lmR +e+++GI+V+ + ++              +lgkSkkaA+ A++++a+sRvl+a+p+mvlppli+ +l+k  +lk+rprl+  p++
  KKY17920.1 100 VASAGALNVFLMRGEEIRQGIDVYPKLSEeekkkrestgeeipSLGKSKKAATLAVGETAVSRVLNATPIMVLPPLILVRLQKMDWLKSRPRLVL-PTN 197
                 *************************99888899*************************************************************6.*** PP

         Mtc 261 lllvglvllfalPlalalFpqrssisvskLepelqekikkkkiekvyfNKGL 312
                 l+l++++++falP+al++Fpqr+++s+++Le+++++k  +   + v+fN+G+
  KKY17920.1 198 LGLILTTSIFALPIALGVFPQRQAVSAKSLEEKFWSKGGE--NDLVEFNRGI 247
                 *************************************544..69*******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.50
# Mc/sec: 1495.14
//
Query:       KKY17921.1  [L=174]
Description: putative tctp family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-57  192.6   2.6    6.5e-57  192.5   2.6    1.0  1  TCTP        Translationally controlled tumour protein
  ------ inclusion threshold ------
      0.011   15.0   0.0      0.013   14.8   0.0    1.1  1  TraH        Conjugative relaxosome accessory transposon prote
      0.049   13.2   0.6      0.058   12.9   0.6    1.1  1  MscS_porin  Mechanosensitive ion channel porin domain


Domain annotation for each model (and alignments):
>> TCTP  Translationally controlled tumour protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.5   2.6   1.1e-60   6.5e-57       1     166 []       1     170 [.       1     170 [. 0.96

  Alignments for each domain:
  == domain 1  score: 192.5 bits;  conditional E-value: 1.1e-60
                 -EEEEETTTTTTSEECTT-EEEE.TTTEEEEE--EEEEETTBST.TSSS--SSSSS.SS.SCCCECCEEHHHHCCTEEEE..CCHHHHHHHHHHHHHHH CS
        TCTP   1 MiiYkdiitgdElfSDsykikevkdgvvyevegkmvtkkegnvdliganasaeege.eegvddevekvndivdnfrLqet..sfdkksykaylkdYmkk 96 
                 MiiYkd+i+gdE++SD++k+ e +d  ++ev+++m+tk+++n+ l gan+sae+++ +eg + e+++v di d+frL+++  + +kk+y+  +k+++kk
  KKY17921.1   1 MIIYKDVISGDEIISDTFKLIEASD-GLWEVDCRMITKGADNFVLEGANPSAEGEDaDEGGEGEAQRVLDIEDQFRLNKIegKPSKKAYQGEVKKFLKK 98 
                 9*********************965.68****************66*******99999999******************96566*************** PP

                 HHHHHHHC..SCCHHHHHHHHHHHHHHHHCTCCTTCEEEEECCCCTTS-EEEEEEECCCCEEEEEEECCCEE CS
        TCTP  97 vkkkleek..kpeevkeFkkgaqeavkkilanfkdyqfytgesmdpdgmvvlldyredgvtPyfvffkdGLk 166
                   +kl+ek    e++++F+k a++avkkilan+++y++y+gesm++d m+vl+dyredgvtPy++ffk +L+
  KKY17921.1  99 TLEKLKEKgaPAEKIEQFQKTAPAAVKKILANYENYDMYMGESMEEDSMYVLVDYREDGVTPYATFFKYALE 170
                 ********9999*********************************************************996 PP

>> TraH  Conjugative relaxosome accessory transposon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.3e-06     0.013     282     339 ..      82     139 ..      58     153 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.3e-06
        TraH 282 idttkglksrvrellesivekiandtaltaeekaflestplpvykllkalaaletgaa 339
                 + ++k+ + +v++ l++ +ek+++++a +++ ++f +++p++v k+l++   ++  + 
  KKY17921.1  82 KPSKKAYQGEVKKFLKKTLEKLKEKGAPAEKIEQFQKTAPAAVKKILANYENYDMYMG 139
                 5788999*****************************************9999844443 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.6   9.7e-06     0.058       2      56 ..      76     130 ..      75     146 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.7e-06
  MscS_porin   2 LdelekakldeaeqkallqdLeqalnlLdkidkskkkaeelqkaiddaPkelrel 56 
                 L+++e + ++ a q ++++ L+++l+ L+++ + ++k+e++qk+   a k++ + 
  KKY17921.1  76 LNKIEGKPSKKAYQGEVKKFLKKTLEKLKEKGAPAEKIEQFQKTAPAAVKKILAN 130
                 78888888999*******************************9766666655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       869  (0.048469); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1155.06
//
Query:       KKY17922.1  [L=423]
Description: putative sphinganine hydroxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-23   82.4  11.5    5.8e-23   81.7  11.5    1.4  1  FA_hydroxylase  Fatty acid hydroxylase superfamily


Domain annotation for each model (and alignments):
>> FA_hydroxylase  Fatty acid hydroxylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7  11.5   3.2e-27   5.8e-23       1     133 []     159     295 ..     159     295 .. 0.91

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 3.2e-27
  FA_hydroxylase   1 lllallledfveYwvHrllHrvkllwrrlHkvHHsseaptalaalrahpleallla.llllllllllg.plsalllvlvlaallelliHsglhvs 93 
                     +l+a+ + d+++Y++Hr++H +k+l+ +lH+ HH+   p a+ al++hple +ll+ l   l++l++g ++ + ++++v  ++ ++  H+g+ ++
      KKY17922.1 159 FLVAVTWIDTWQYILHRAMHMNKFLYTTLHSRHHRLYVPYAFGALYNHPLEGFLLDtLGSGLAYLVAGmTTRQGMILFVGSTFKTVDDHCGYALP 253
                     689999***************99*********************************777777888888888899999999***********6566 PP

  FA_hydroxylase  94 lgwllerllatpraHrlHHskne.egnfgv.llslwDrlfgT 133
                      +++ + +++ +++H++HH++   ++nf++ ++++wD ++gT
      KKY17922.1 254 WDPFQHITSNNAAYHDIHHQSWGiKTNFSQpFFTFWDAILGT 295
                     66666888************999788***977*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      597  (0.033298); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 2635.72
//
Query:       KKY17923.1  [L=96]
Description: hypothetical protein UCRPC4_g05295 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       152  (0.00847788); expected 358.6 (0.02)
Passed bias filter:                      129  (0.00719505); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 721.72
//
Query:       KKY17924.1  [L=792]
Description: hypothetical protein UCRPC4_g05296 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0033   18.1   0.0     0.0096   16.5   0.0    1.8  1  Abhydrolase_6  Alpha/beta hydrolase family
     0.0075   15.5   0.0      0.017   14.3   0.0    1.5  1  LCAT           Lecithin:cholesterol acyltransferase
  ------ inclusion threshold ------
      0.062   12.8   0.1       0.15   11.5   0.0    1.6  2  Peptidase_S9   Prolyl oligopeptidase family
       0.08   12.7   0.0       0.28   10.9   0.0    1.8  2  PGAP1          PGAP1-like protein
       0.12   11.6   0.0       0.24   10.7   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
       0.16   11.5   0.0       0.28   10.7   0.0    1.3  1  DUF676         Putative serine esterase (DUF676)


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.2e-06    0.0096      62     141 ..     447     555 ..     411     626 .. 0.59

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.2e-06
                    .........TTSEEEEEETCHHHHHHHHHHCC....EEEEES-...........----TTT....S----TTHHHHHHTT-C.CCCHCCH...... CS
  Abhydrolase_6  62 a.......gggpvvlvGHSlGGalalaaapla..lvvgvlldppp.........talpagl....laaalelllallallrl.lawlsre...... 128
                              + +++++HSlGG+l+  a+ +   l +gvl+++ p         +    ++    l   + l ++++  lr+ +a++ +       
     KKY17924.1 447 CnqsstprHLRGAIVIAHSLGGLLVRSAVNQRpeLFAGVLYAGVPqhcvnilgpL----RNgddvLFSSRVLTAQVNFTLRTsFALMPESgicffn 538
                    1444555555778**********999977777988788*****777777644322....2222334444444445555444422333111223222 PP

                    .....S-HSCCCCHHHC..C CS
  Abhydrolase_6 129 .....plprlfladeda..d 141
                          ++ +f++   a  +
     KKY17924.1 539 ratkeRYDVDFFD---AktW 555
                    2233322223333...2222 PP

>> LCAT  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   5.5e-06     0.017      90     141 ..     423     477 ..     401     483 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.5e-06
        LCAT  90 apYDWRls....leerdkYfskLkelieealklsgkkvvliaHSmGnllvlyflkw 141
                   YDWRls     ++  +Y++ L      +   + +  ++iaHS+G+llv+   ++
  KKY17924.1 423 YGYDWRLSpkllVQKLIQYLETLECNQSSTP-RHLRGAIVIAHSLGGLLVRSAVNQ 477
                 57******76666666777776655433333.55566899**********987765 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.5   4.4e+03     181     196 ..     266     282 ..     264     286 .. 0.78
   2 ?   11.5   0.0   5.1e-05      0.15      71      93 ..     464     486 ..     455     495 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.5
                   ETTS-SSTTSSHHHH.H CS
  Peptidase_S9 181 fpdegHgvgkprakv.e 196
                    +++gHg++++r++  +
    KKY17924.1 266 RTESGHGAQMQRDQLsD 282
                   6899******9998744 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 5.1e-05
                   ETHHHHHHHHHHHH-GGG-SEEE CS
  Peptidase_S9  71 gSyGGyltgaalnqrpdlFkaav 93 
                   +S GG+l+  a+nqrp+lF++++
    KKY17924.1 464 HSLGGLLVRSAVNQRPELFAGVL 486
                   8******************9875 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       0.8   2.4e+03     135     179 ..     291     345 ..     283     348 .. 0.62
   2 ?   10.9   0.0   9.4e-05      0.28      72     110 ..     435     476 ..     430     486 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.8
       PGAP1 135 sfdkdilklyervnefwkkeleekek.........lenvl.lvsitggirdsmvp 179
                 s +  i++ y+ vn+ ++++ +++e+         l++ +  v + gg+r+s+++
  KKY17924.1 291 SSESAIQQSYSVVNQSMSTSKKPNENtsypslnqaLKDFSgDVVVLGGYRGSILR 345
                 3455667788888888888777776666667666655554246666777776665 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 9.4e-05
       PGAP1  72 lndaIkyIlsly...sssekeptsviliGHSmGGivaraalt 110
                 ++++I+y+  l    ss++++ +  i+i+HS+GG++ r+a+ 
  KKY17924.1 435 VQKLIQYLETLEcnqSSTPRHLRGAIVIAHSLGGLLVRSAVN 476
                 7788888766666655666677788*************9986 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.9e-05      0.24      76     106 ..     457     487 ..     432     497 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.9e-05
  Hydrolase_4  76 lplfllGhSmGGliallyllrypdkvaglil 106
                  +  ++++hS+GGl++ +++ ++p+ +ag+  
   KKY17924.1 457 RGAIVIAHSLGGLLVRSAVNQRPELFAGVLY 487
                  3679********************6666544 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.4e-05      0.28      83      99 ..     461     477 ..     432     492 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.4e-05
      DUF676  83 fvghSlGgliaraaiak 99 
                 +++hSlGgl +r+a+ +
  KKY17924.1 461 VIAHSLGGLLVRSAVNQ 477
                 79*************84 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.37s 00:00:01.16 Elapsed: 00:00:00.57
# Mc/sec: 4216.18
//
Query:       KKY17925.1  [L=382]
Description: hypothetical protein UCRPC4_g05297 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-83  278.4   0.8    5.6e-83  277.9   0.8    1.2  1  DUF3431       Protein of unknown function (DUF3431)
  ------ inclusion threshold ------
      0.029   14.6   0.1       0.29   11.4   0.1    2.3  2  PG_binding_3  Predicted Peptidoglycan domain
      0.034   13.8   0.0       0.05   13.3   0.0    1.3  1  DUF2229       CoA enzyme activase uncharacterised domain (DUF
        0.2   11.4   0.1        4.3    7.0   0.1    2.2  2  DUF4239       Protein of unknown function (DUF4239)


Domain annotation for each model (and alignments):
>> DUF3431  Protein of unknown function (DUF3431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.9   0.8   1.3e-86   5.6e-83       1     215 []      73     294 ..      73     294 .. 0.95

  Alignments for each domain:
  == domain 1  score: 277.9 bits;  conditional E-value: 1.3e-86
     DUF3431   1 lVvaklkeedtsWveeelpdlqtaiYvvddpsaeltvpankGreamaYltyiidnYdsLpdvvvFvhahraawhndal.dydnaallrrlrleavqeeG 98 
                 lV++k + +dtsWv+++  +++t+iY+vddp+ae+tvp+nkGream+Yltyiid+Yd+L+d+++F+h h   whn+ l   +na+ ++rl+ ++v +eG
  KKY17925.1  73 LVMGKFSFDDTSWVDSSDLNVNTTIYIVDDPNAEITVPQNKGREAMVYLTYIIDHYDNLSDTTFFFHPHLVGWHNNVLlAVNNAEQIKRLSDARVAREG 171
                 8***************999*********************************************************999******************** PP

     DUF3431  99 YvnlrckwepgCpaelkple.kee...eekkeee.alaeafaelf.eeeevpevvaapcCaqFavsrerirkrpreeYvrlrqwlletelddelsGrvl 191
                 Y+n rc+++pgCp++l+  +  +e    +k+eee +++++++el+ ++e++p+++++pcCaqFavsrerir++p+++Y+ lrqwl++t+ldd +sGrvl
  KKY17925.1 172 YMNARCHHDPGCPDWLHLDHvGNEyekWQKPEEEfFTSRVWRELYgDQEPLPKALSQPCCAQFAVSRERIRRHPKSKYEGLRQWLVSTDLDDLISGRVL 270
                 ***************9977743446664455555599999*****87889************************************************* PP

     DUF3431 192 eylWhilFgkeavaCpdeeecycd 215
                 ey W++lF++++++Cp+++ecycd
  KKY17925.1 271 EYNWQYLFTDQSEFCPSMHECYCD 294
                 ***********************7 PP

>> PG_binding_3  Predicted Peptidoglycan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.23     1e+03      53      75 ..     127     149 ..     116     150 .. 0.85
   2 ?   11.4   0.1   6.4e-05      0.29       6      55 ..     306     360 ..     302     371 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.23
                   HHHHHHHHHHSTHHHHHHHHHHH CS
  PG_binding_3  53 fyldlaerritnerflrGWvkrl 75 
                    y +l++    ++  l GW++++
    KKY17925.1 127 HYDNLSDTTFFFHPHLVGWHNNV 149
                   6888888888889999****986 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 6.4e-05
                   HHHHH....T.....S---S..---HHHHHHH...HHS-HHHHHHHHHHHHHHHHH CS
  PG_binding_3   6 lQriL....gklgydvkvDG..iiGpkTlaAvearasadedaLlkainlarrefyl 55 
                   lQ++L     k   d ++DG    G +T +Av + a+++ ++L + + + +++ y+
    KKY17925.1 306 LQEWLdilkQKEDADGQIDGlkEAGDETSKAV-QDAKEKSEELTNTLKDLQAKAYA 360
                   8****7777667778888884447********.66778888999999888887775 PP

>> DUF2229  CoA enzyme activase uncharacterised domain (DUF2229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.1e-05      0.05     109     186 ..     301     377 ..     249     382 .] 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
     DUF2229 109 eeikllspvldledkkelakqlleelgiskkeikkAvekAleaqkafkeelrkkgeelleeleeegkkgivllGrpYh 186
                 e+ k l++ ld+ ++ke a+  ++ l+   +e++kAv+ A e+ ++ +++l++ ++++ ++  ++ k+  + +GrpY 
  KKY17925.1 301 EGEKKLQEWLDILKQKEDADGQIDGLKEAGDETSKAVQDAKEKSEELTNTLKDLQAKAYAA-GQDPKQRALSAGRPYK 377
                 567778888888866665665666899999***********************99999884.66778899*******8 PP

>> DUF4239  Protein of unknown function (DUF4239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1   0.00096       4.3      10      34 ..      14      38 ..      12      44 .. 0.92
   2 ?    1.9   0.0     0.035   1.6e+02      83     138 ..     118     174 ..      78     180 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00096
     DUF4239 10 atlvsltlsvLynrqvevqeavnkE 34
                a+lvs+ +++Ly+rq  + ++v+ E
  KKY17925.1 14 ALLVSIFVVILYHRQASLLRKVSRE 38
                899*******************998 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.035
     DUF4239  83 elslk.asseltkLldllaevkgdassesaaveellseiaqltelRakRisdeaval 138
                 ++ l    +++++L+d    ++++ ++ ++ v  + ++  q++ l   R++ e    
  KKY17925.1 118 MVYLTyIIDHYDNLSDTTFFFHPHLVGWHNNVLLAVNNAEQIKRLSDARVAREGYMN 174
                 455556789******************988888777777777777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1040  (0.0580066); expected 358.6 (0.02)
Passed bias filter:                      808  (0.0450667); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.54
# Mc/sec: 2141.46
//
Query:       KKY17926.1  [L=968]
Description: putative exosome complex exonuclease exoribonuclease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.3e-96  321.0   0.2    1.3e-95  320.5   0.2    1.2  1  RNB            RNB domain
    4.3e-32  110.9   0.0    9.7e-32  109.7   0.0    1.6  1  Rrp44_CSD1     Rrp44-like cold shock domain
    3.3e-22   78.2   0.2    7.5e-22   77.1   0.2    1.6  1  Rrp44_S1       S1 domain
    3.7e-20   71.7   0.0    9.1e-20   70.5   0.0    1.7  1  OB_Dis3        Dis3-like cold-shock domain 2 (CSD2)
    8.2e-09   35.8   0.0    2.9e-08   34.0   0.0    2.0  1  PIN_4          PIN domain
     0.0005   20.2   0.0      0.014   15.6   0.0    2.6  2  CSD2           Cold shock domain
  ------ inclusion threshold ------
      0.046   14.1   0.1       0.19   12.1   0.1    2.1  1  Dis3l2_C_term  DIS3-like exonuclease 2 C terminal


Domain annotation for each model (and alignments):
>> RNB  RNB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.5   0.2   4.9e-99   1.3e-95       1     324 [.     450     783 ..     450     785 .. 0.94

  Alignments for each domain:
  == domain 1  score: 320.5 bits;  conditional E-value: 4.9e-99
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB   1 RkdlrdllvitIdpedakdlDdAisieklpngnyelgVhIADvshyvkegspldkearkratsvyLpekvvpMLPqelsedlcSLnpgedrlalsvlid 99 
                 Rkdlrd lv++Idp++++d+DdA++ ++lpngn+e+gVhIADvsh+vk+++++d ea  r+t+vyL +k + MLP  l +dlcSL+p+ +r+a+s l++
  KKY17926.1 450 RKDLRDILVCSIDPPGCQDIDDALHARPLPNGNFEVGVHIADVSHFVKPNNAMDLEASARGTTVYLVDKRIDMLPMLLGTDLCSLKPYVERYAFSTLWE 548
                 9************************************************************************************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
         RNB 100 vdekgevlsveiylsvIkskarltydevqdlleqkdekeekktaedLellyelakalrkkRlkkgalefdspeikllldedkg..nrielkveeetkah 196
                 + ++  + s ++++svI s++ ++y+++q  +++k++   ++ ++++++l  l+++lr+kR + gal++ spe++++ d+++     +++k++ +   +
  KKY17926.1 549 ITSDADIVSASFTKSVILSREAFSYEQAQLRIDDKTA--TDDLTNSMRTLLSLSQKLRQKRMDAGALNLASPEVRIETDAETSadPLTDVKTKAHLATN 645
                 ********************************88877..568*************************************966675666788888888** PP

                 xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx RF
         RNB 197 slveelmllANelvArfl.seleipailriheepsnekledliklak.klglklednsskknlqeslekleeee...aeqllselllrllkeakyssep 290
                 slvee+mllAN++vA+++ s ++++a+lr+h  p  +++ +l++ +k k g++  d ss k+l +sl+++ +      ++l++ l +r++++a+y+++ 
  KKY17926.1 646 SLVEEFMLLANTTVASKIhSSFPQTALLRRHATPPASNFSELAEQLKrKRGFD-LDVSSSKALADSLDRCIDPVhpfFNTLIRILATRCMTSAEYFCSG 743
                 ******************999**************999999998877466777.5566666**********9999999******************999 PP

                 ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 291 ......vgHfgLaleeYthfTSPirRYpDlvvhrllkall 324
                       ++H+gLa e+YthfTSPirRY+Dl+ hr+l  ++
  KKY17926.1 744 shaepeFRHYGLASEIYTHFTSPIRRYADLLAHRQLAYAI 783
                 99999*******************************8765 PP

>> Rrp44_CSD1  Rrp44-like cold shock domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.7   0.0   3.8e-35   9.7e-32       3     147 ..     184     321 ..     182     322 .. 0.89

  Alignments for each domain:
  == domain 1  score: 109.7 bits;  conditional E-value: 3.8e-35
                 -------HHHHHHHHHTTSEEEEEEEEESSBTTEEEEE-SSSSS-EEEESHHHHTS--TT-EEEEEE--GGG-B---SS-B-CCCSSTT--TT-B--SS CS
  Rrp44_CSD1   3 tfpeyystarvmgglkngvlyqgniqiseynflegsvslprfskpvlivgqknlnrafngdqvivellpqsewkapssivldsehfdvndnpdieagdd 101
                  +pey+s +r+  glk g l+qg  ++s yn+leg+vs+p f kp++i+g+ n nr++ gd v+ve+lp+ +wkaps+ +ld e+++       + g d
  KKY17926.1 184 FYPEYHSMSRLQTGLKAGTLHQGIFHVSPYNYLEGTVSVPSFDKPLIIMGRENSNRSISGDSVVVEVLPKDQWKAPSTKILDEEQVN--K----DEGAD 276
                 69*********************************************************************************9754..3....34677 PP

                 S--SSSSS-SS--SHHHHHHHHHHHHHHHHHSS..SB-BEEEEEEEE- CS
  Rrp44_CSD1 102 ddnnesssnttvisdkqrrllakdamiaqrskk..iqptakvvyiqrr 147
                 d+n+e     +++++++r+ l  +   aqr  +   qpta+vv + +r
  KKY17926.1 277 DENEEE---EAIVTERERKALYEEVRKAQRGSQtdAQPTARVVGVIKR 321
                 777765...46899****************764227*******87766 PP

>> Rrp44_S1  S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.2   2.9e-25   7.5e-22       1      79 [.     849     941 ..     849     950 .. 0.88

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 2.9e-25
                 SEEEEEEEEEESSEEEEEETTTTEEEEEEHHHCBS-GGG...............-EEETTTTEEEEBBTT.SSS-EEEETTSEEEEEEEEEE- CS
    Rrp44_S1   1 veeegyvikvfsNGvvvlvprfGiEglirledlaeeees.............keaefdeeeykleveekk.kekkvtvelFdkvkVkvksekd 79 
                 veeegyv+++f+NG  v++prfGiEgl+rled+  +++s             + +e ++e+y+l++ +k+ +++k++velF+kv+ +v+se+ 
  KKY17926.1 849 VEEEGYVMRIFENGAIVFIPRFGIEGLVRLEDFELSSSSsstsslvenvtvqRGSELNSETYTLKIWDKHvESEKIQVELFQKVRCRVSSEEK 941
                 589******************************888777899********99999***********998724556*************98754 PP

>> OB_Dis3  Dis3-like cold-shock domain 2 (CSD2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   3.6e-23   9.1e-20       2      76 ..     348     414 ..     347     415 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 3.6e-23
                 EEE--SSTTS--EEEETTSSTTTHHHHTTTTTT--EEEEE----TT-SS-EEEEEEE-HHHHHHHHHHHHHHHHT CS
     OB_Dis3   2 vlfkPldkrlPriliptkelpeeflenpeelegklfvvkidsWsetsryPlGeivksLGeagdieaeteaiLlen 76 
                 v++ P+dk++P+i+i+t+++        e+l gk+++++id+W+ + ryP G++v+sLG+ ++ eaetea+Lle 
  KKY17926.1 348 VFLLPMDKKIPKIRIRTRQA--------EDLIGKRILATIDTWDRDTRYPVGHYVRSLGQLETKEAETEALLLEW 414
                 899*****************........*********************************************95 PP

>> PIN_4  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   1.1e-11   2.9e-08       3     129 ..      26     149 ..      24     151 .. 0.78

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.1e-11
       PIN_4   3 lDTnvlLhdpealksfkeehdvviPitVleELdklKkgsserelarlarqanrlldellekesgrlkvqtsaeelpeeeseseknDnrIlavalelkee 101
                  DTn +L+ ++++++ +  +dv++ +tVleE+++      +r l+ l ++ +r+    +++   +  v++++ e  +   +  +nD+++ ++a +++e+
  KKY17926.1  26 PDTNAFLSAMDLFEQPSAFYDVIVLQTVLEEVRARSLPIYNRLLGLLKSEEKRFY-LFFNEFRLETYVRRDEGETIN---D--RNDRAVRRAAKWYQEH 118
                 5*******************************87777666566666655666655.556555555555555544443...4..9*************** PP

       PIN_4 102 kp...drkvvLvskDinlrikAkalgieaed 129
                 +p      +vL+++D+ +  k k  g+ a +
  KKY17926.1 119 IPrkkCPAIVLLTNDRANLDKCKRDGVTALT 149
                 **4444457*****************99865 PP

>> CSD2  Cold shock domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.13   3.2e+02      13      46 ..     230     263 ..     223     266 .. 0.73
   2 !   15.6   0.0   5.4e-06     0.014       1      71 [.     349     418 ..     349     422 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.13
        CSD2  13 ifipkeklkgakdGdkVvveiteypdkknpeGev 46 
                 i+  +e+ +   +Gd Vvve++  ++ k p  ++
  KKY17926.1 230 IIMGRENSNRSISGDSVVVEVLPKDQWKAPSTKI 263
                 4455778888999*******98765445576666 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 5.4e-06
        CSD2   1 FVvpddkrlkqdifipkeklkgakdGdkVvveiteyp.dkknpeGevievLGkkgdpgveilsilakhglpe 71 
                 F+ p dk++++ i i  ++++    G+ +++ i  ++ d + p+G+ +++LG+ +++++e ++ l + ++++
  KKY17926.1 349 FLLPMDKKIPK-IRIRTRQAE-DLIGKRILATIDTWDrDTRYPVGHYVRSLGQLETKEAETEALLLEWDVQY 418
                 8999******5.888866444.334***********845567**********************99988776 PP

>> Dis3l2_C_term  DIS3-like exonuclease 2 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   7.2e-05      0.19       3      76 ..     849     937 ..     848     944 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.2e-05
  Dis3l2_C_term   3 leekavVvnVldssfDVlileyGlekRVyldklplkefefdk......tkv...........LtLy.Wkkdvpeaevvqeeekfssvvkvvl 76 
                    +ee++ V+ + ++   V+i+++G+e  V l++ +l++ + ++      + +            tL  W+k+v+  +++ ++e f++v+ +v+
     KKY17926.1 849 VEEEGYVMRIFENGAIVFIPRFGIEGLVRLEDFELSSSSSSTsslvenV-TvqrgselnsetYTLKiWDKHVE--SEKIQVELFQKVRCRVS 937
                    79********************************997555322233221.02333343444434433766653..44555556666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (968 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 6307.38
//
Query:       KKY17959.1  [L=681]
Description: putative pps1 dual specificty phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-28   98.1   0.0      1e-18   67.4   0.0    2.3  2  DSPc             Dual specificity phosphatase, catalytic doma
    3.5e-05   23.5   0.0      0.035   13.7   0.0    2.2  2  Y_phosphatase    Protein-tyrosine phosphatase
  ------ inclusion threshold ------
      0.072   13.2   0.1         19    5.4   0.0    2.5  2  PTPlike_phytase  Inositol hexakisphosphate


Domain annotation for each model (and alignments):
>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.9e-10   1.2e-06      71     113 ..     356     398 ..     351     408 .. 0.89
   2 !   67.4   0.0   1.7e-22     1e-18       2     131 ..     466     601 ..     465     603 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.9e-10
                 HTT-EEEEEESSSSSHHHHHHHHHHHHHHTSCHHHHHHHHHHH CS
        DSPc  71 qkgkkvlVHCqaGisRSatliiaYlmktknlslneayeflker 113
                 +k++kvl+HC+ G++ + +l++aY+m+ +++ + ea+  l   
  KKY17959.1 356 TKHRKVLIHCADGYTETSMLVVAYYMYAEGVPVHEAWVQLHVA 398
                 799*********************************9887655 PP

  == domain 2  score: 67.4 bits;  conditional E-value: 1.7e-22
                 EEEECCHHC.HHHHHHHTCSEEEEESSSSSEC..ECCTTTTSEEEEEC.CESSTTSCCGGGHHHHHHHHHHHHHTT-EEEEEESSSSSHHHHHHHHHHH CS
        DSPc   2 ylgskstas.lallsklgitlvinvtkevpna..nalkkseieklrip.vedehetkiskyleeavefidkakqkgkkvlVHCqaGisRSatliiaYlm 96 
                 ylg+ ++a  + ll++lgi+ ++ + + v+++   ++   +++ l i  v+d+  + +++++ +  +fi + kq+g   lVHC+ G+sRSat++ia  m
  KKY17959.1 466 YLGNLTHANnPLLLKALGIKRILSIGEPVTWTqeEIRGWDSKDLLYIDrVQDNGIDPLTQEFGKCLDFIGQGKQDGFATLVHCRVGVSRSATICIAEVM 564
                 9********99999***************99987555566788888889************************************************** PP

                 HHHTSCHHHHHHHHHHHS..TT-SSTHHHHHHHHHHH CS
        DSPc  97 ktknlslneayeflkerr..paispnagfirqLleye 131
                 ++ +ls   ay f++ rr    i p   f+ +Ll++ 
  KKY17959.1 565 SSLGLSFPRAYCFVRARRlnVIIQPHLRFVYELLKWD 601
                 ******************8667889999999999986 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00045       2.7     166     195 ..     344     383 ..     309     402 .. 0.71
   2 !   13.7   0.0   5.8e-06     0.035     155     195 ..     530     566 ..     493     598 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00045
                    H..........STTSS-EEEECSSSSHHHHHHHHHHHHHH CS
  Y_phosphatase 166 k..........eaksgpvvVhCsaGvgRtgtfvaldillq 195
                                +k+  v++hC +G   t+++v++ +++ 
     KKY17959.1 344 DrdgdipmteiPTKHRKVLIHCADGYTETSMLVVAYYMYA 383
                    05555555555567899*****************999875 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 5.8e-06
                    HHHHHHHHHHHHSTTSS-EEEECSSSSHHHHHHHHHHHHHH CS
  Y_phosphatase 155 llklirkvekskeaksgpvvVhCsaGvgRtgtfvaldillq 195
                     l++i + ++    +   ++VhC  Gv+R++t++ ++++ +
     KKY17959.1 530 CLDFIGQGKQ----DGFATLVHCRVGVSRSATICIAEVMSS 566
                    3344444444....44789****************999865 PP

>> PTPlike_phytase  Inositol hexakisphosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0031        19     130     154 ..     342     381 ..     313     383 .. 0.70
   2 ?    5.1   0.0    0.0036        22     112     151 ..     521     561 ..     515     565 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0031
                      T...............T-EEEEE-SSSSHHHHHHHHHHHH CS
  PTPlike_phytase 130 e...............ktalvfnCqmGrgRTTtamviatL 154
                      +               +  ++++C +G + T++ +v++++
       KKY17959.1 342 SddrdgdipmteiptkHRKVLIHCADGYTETSMLVVAYYM 381
                      0555555555555556999*******************99 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0036
                      ---HHHHHHHHHHHHTS.-TT-EEEEE-SSSSHHHHHHHHH CS
  PTPlike_phytase 112 apeeedfdalvsilkea.pektalvfnCqmGrgRTTtamvi 151
                       p+ ++f + ++++ +  ++  a +++C++G+ R+ t  ++
       KKY17959.1 521 DPLTQEFGKCLDFIGQGkQDGFATLVHCRVGVSRSATICIA 561
                      58888999999999999777999************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 4094.98
//
Query:       KKY17960.1  [L=632]
Description: hypothetical protein UCRPC4_g05162 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 4205.26
//
Query:       KKY17961.1  [L=606]
Description: hypothetical protein UCRPC4_g05163 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 3851.68
//
Query:       KKY17962.1  [L=264]
Description: putativelike family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-13   49.8   0.0    6.1e-13   49.1   0.0    1.3  1  NAD_binding_10  NAD(P)H-binding
    2.3e-08   33.9   0.0    3.5e-08   33.3   0.0    1.5  1  NmrA            NmrA-like family
    0.00027   20.5   0.0     0.0028   17.1   0.0    2.2  2  Epimerase       NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.044   13.9   0.0       0.12   12.5   0.0    1.9  1  DapB_N          Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   1.4e-16   6.1e-13       1     107 [.      12     123 ..      12     143 .. 0.82

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 1.4e-16
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCH.HHH.CTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC...HHHHHHHHHHHHHHCT- CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpekla.ele.aeeglevvegdvtdvedlaealkgadaVvsalggggk...deegaknivdaakeagv 90 
                     G tG+ G l+++ ll+  ++ v+ ++R+pek++ +l+ ++++ ++++g++++ +d+++al+g+++V++a ++  +     ++ k +++a++++gv
      KKY17962.1  12 GVTGRLGNLIASYLLKFPNTIVHGFTRSPEKVPgSLSaDTDRFKLFTGSAEKLQDVRKALAGCETVICAYNTAVDnkfMVDAQKVLIEACDAEGV 106
                     78****************99************844443679*****************************8766534555559999********* PP

                     -EEEEEEETTTTSGCGC CS
  NAD_binding_10  91 kRfvlvsaigvgdevpg 107
                     +R+    + g + + + 
      KKY17962.1 107 SRYFASDYTGYYPRLEP 123
                     *****999999965433 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   7.8e-12   3.5e-08       1     149 [.       8     165 ..       8     238 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 7.8e-12
                 EEESSTTSHHHHHHHHHHHH.HT-EEEEEES-S-SH.HHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG...S-HHHHHHHHHHHHHHHS- CS
        NmrA   1 IlviGaTGrqGksvvrallk.aghkvralvRdtkse.lakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy...skeiedgkklvdAakeaGv 94 
                 I+v G TGr+G+ ++++llk  +  v   +R +++   + s  +   +l  g+++  + +++al g ++v+++ +++   +  ++ +k l++A  + Gv
  KKY17962.1   8 IAVAGVTGRLGNLIASYLLKfPNTIVHGFTRSPEKVpGSLSADTDRFKLFTGSAEKLQDVRKALAGCETVICAYNTAvdnKFMVDAQKVLIEACDAEGV 106
                 89******************999999*******66415666666777888*************************989888899*************** PP

                 SEEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHC......TS-EEEEEE-EEGGG-B CS
        NmrA  95 khfiySslgddndrsnaeepavphfdsKaeieeyvral......gipytfvyagffmenfl 149
                  +++ S ++    r   e  ++p+ d  ++i +y+r        ++    ++ag+f e fl
  KKY17962.1 107 SRYFASDYTGYYPRL--EPGDLPIKDPMIKIYKYIRDGnfsgtvRVKPVHILAGAFIEAFL 165
                 *******99888776..33357888888888888888733333333333455555555555 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   6.3e-07    0.0028       1     124 [.       8     123 ..       8     138 .. 0.78
   2 ?    0.7   0.0     0.065   2.9e+02     199     225 ..     173     199 ..     154     209 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6.3e-07
                 EEEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC...EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgye.vigldrlssasntarledl...elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgt 95 
                 i V+G+tG +G+ ++ +ll+   + v+g++r +++ + ++ +d+   +l ++   + ++++++++  ++++vi +        +    ++f+   +  +
  KKY17962.1   8 IAVAGVTGRLGNLIASYLLKFPNTiVHGFTRSPEKVPGSLSADTdrfKLFTGSAEKLQDVRKALA--GCETVICA-------YNTAVDNKFM---VDAQ 94 
                 68********************999*************999999999999999999999999999..99999988.......2222223444...4567 PP

                 HHHHHHHHHHTCTEEEEEEEGGGGTSCSS CS
   Epimerase  96 lnlleaarkagvkrllflsSsevYGkdae 124
                   l+ea+ + gv r+     +  Y++ ++
  KKY17962.1  95 KVLIEACDAEGVSRYFASDYTGYYPRLEP 123
                 77888888888855544444666666655 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.065
                 SEEEETTST-EEEEEEHHHHHHHHHHH CS
   Epimerase 199 evtllgdgtalRdflyveDvaeaillv 225
                 + +++g+g++ +df   e +a+   +v
  KKY17962.1 173 DAKYWGTGNETWDFSSYETIAKYTAHV 199
                 5689**********8877777665555 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.7e-05      0.12       2      41 ..       7      45 ..       6     111 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.7e-05
                EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTT CS
      DapB_N  2 kvavvGasGrmGkevvkaveeaedlelvaavdrkeseleg 41
                ++av+G++Gr+G+ +++ + + +++ +++   ++e ++ g
  KKY17962.1  7 HIAVAGVTGRLGNLIASYLLKFPNTIVHGFTRSPE-KVPG 45
                69*******************99987666555544.5544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 1633.18
//
Query:       KKY17963.1  [L=461]
Description: putative transcription factor aceii [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-06   27.6  10.4      6e-06   26.3  10.4    1.7  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3  10.4   3.4e-10     6e-06       2      36 ..      12      48 ..      11      51 .. 0.90

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 3.4e-10
                S-HHHHHCT---ST..SSSS-HHHHHCTHHHCCCCTC CS
     Zn_clus  2 aCdnCrkkKvKCda..kkPaCsnCkklnleCtfyses 36
                aC +Cr +K +C +   +++Cs+C+k ++ C+  + +
  KKY17963.1 12 ACSRCRTQKLRCPRatAQENCSRCVKAGARCVSVTPK 48
                9*************998899************66655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3199.19
//
Query:       KKY17964.1  [L=558]
Description: putative trna methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-10   40.7   0.0    1.9e-08   33.7   0.0    2.7  2  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
    5.8e-06   26.9   0.0    1.2e-05   25.9   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    7.2e-05   22.3   0.0    0.00012   21.6   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0011   18.8   0.0     0.0022   17.8   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
     0.0012   19.4   0.0     0.0027   18.3   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
     0.0027   17.3   0.0      0.007   15.9   0.0    1.7  2  Methyltransf_15  RNA cap guanine-N2 methyltransferase
     0.0086   15.8   0.0      0.016   15.0   0.0    1.3  1  Met_10           Met-10+ like-protein
  ------ inclusion threshold ------
       0.04   13.5   0.0      0.068   12.7   0.0    1.3  1  MTS              Methyltransferase small domain


Domain annotation for each model (and alignments):
>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.2   2.6e+03      86     122 ..     131     167 ..     124     185 .. 0.61
   2 !   33.7   0.0   8.3e-12   1.9e-08     204     327 ..     388     500 ..     333     506 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.2
  tRNA_U5-meth_tr  86 lkqdeklreklfqvdflstlsgellvsllyhkkldde 122
                       k +++ r+ l + +++ t sg  l  l y  +ld +
       KKY17964.1 131 SKPSQQRRDDLVGCKYFGTCSGCQLQMLPYEDQLDHK 167
                      5566666667777777777777777777777777654 PP

  == domain 2  score: 33.7 bits;  conditional E-value: 8.3e-12
  tRNA_U5-meth_tr 204 dllelycGnGnfslalarnfekvlateiakssveaaqyniaankidnvqiirlsaeeltealkkkrefrrlkgidlksyafetifvdPPraGld 297
                       ll+ ycG G f+++l+  f+  l  ++  +s+  a+ n  ank+    +i   a  l            +++i +   +   +++dPPr G  
       KKY17964.1 388 YLLDAYCGSGLFTITLSSLFTSSLGVDVDPASIRYARLNASANKVPRTGFIDADAAKL------------FADIPFPADQ-TVMVIDPPRKGCS 468
                      59********************************************999998766554............3466665433.45678******** PP

  tRNA_U5-meth_tr 298 ketvklvkky..erilyiscnPetlkenleel 327
                       + +k + ++  +ri+y+scn +t + ++  l
       KKY17964.1 469 ADFLKQLLAFgpKRIVYVSCNVNTQARDVGML 500
                      *****98888446**********998877665 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   5.3e-09   1.2e-05       2      65 ..     390     456 ..     389     462 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 5.3e-09
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBC....CGBSSSTTTE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgda....edlpfedgsf 65 
                      Ld+ cG+G +t+ l+  +   + +gvD++++ +++ar +a+++++ +  f+ +da     d+pf++++ 
       KKY17964.1 390 LDAYCGSGLFTITLSSLF--TSSLGVDVDPASIRYARLNASANKVpRTGFIDADAaklfADIPFPADQT 456
                      8999*************9..9*********************9999*********44444457876654 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   5.2e-08   0.00012     165     211 ..     389     434 ..     381     454 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 5.2e-08
        PrmA 165 vlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea 211
                 +lD  +GSG+ +i  + L + + ++vD+D+ +++ a+ Na+ Nkv +
  KKY17964.1 389 LLDAYCGSGLFTITLSSLFT-SSLGVDVDPASIRYARLNASANKVPR 434
                 78999************976.569********************987 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   9.8e-07    0.0022       6      66 ..     388     445 ..     386     460 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 9.8e-07
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieel 66 
                      ++lD+ CG+G +t+ l ++  +     G+D ++ +i++Ar na+ +++ +  F  +d+ +l
       KKY17964.1 388 YLLDAYCGSGLFTITLSSLFTS---SLGVDVDPASIRYARLNASANKVPRTGFIDADAAKL 445
                      689**************76554...79**********************999999999874 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.2e-06    0.0027       1      58 [.     390     452 ..     390     460 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.2e-06
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCC....TSS- CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl.kvefvvadaek....lpfe 58 
                      Ld+ cG+G+++  l + +++ +gvD++++ +++a+ +as +++ +  f+ ada k    +pf+
       KKY17964.1 390 LDAYCGSGLFTITLSSLFTSSLGVDVDPASIRYARLNASANKVpRTGFIDADAAKlfadIPFP 452
                      6778**************************************999999****99733335665 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.9   6.4e+03      48      79 ..      70     101 ..      65     116 .. 0.76
   2 !   15.9   0.0   3.1e-06     0.007       2      84 ..     387     467 ..     386     474 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.9
  Methyltransf_15  48 sdkitlvlgdvfellaklklekikvdlvflSp 79 
                      +d+++l+ + + ++  +l +++ + d+vf+ p
       KKY17964.1  70 QDELDLKAARLSSTGDSLAVSADYPDCVFVVP 101
                      56666666666677777778888899999755 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 3.1e-06
  Methyltransf_15   2 rvilDlfsGaGGnviqfalvfekviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklklekikvdlvflSpPwGGp 84 
                      +++lD+++G+G  +i++   f++  ++++++  +  a  Na +  v  +  ++ +d  +l+a + + +    ++++ pP  G 
       KKY17964.1 387 KYLLDAYCGSGLFTITLSSLFTSSLGVDVDPASIRYARLNASANKV-PRTGFIDADAAKLFADIPFPAD-QTVMVIDPPRKGC 467
                      789***************************************9977.5678999999999999999888.6677778887665 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     7e-06     0.016     104     175 ..     389     459 ..     383     486 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7e-06
                 EEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---..TT-EEEEEE- CS
      Met_10 104 VvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevir..eqladrvvmn 175
                  +d + G G f+i+++ +   +  l++d++P+s++y + n   Nkv ++   i +D++++    +  ad+ vm 
  KKY17964.1 389 LLDAYCGSGLFTITLSSLFTSS--LGVDVDPASIRYARLNASANKVPRTG-FIDADAAKLFAdiPFPADQTVMV 459
                 579999**********866555..9*********************9986.89999988877566778888885 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     3e-05     0.068      35     106 ..     389     463 ..     381     478 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3e-05
                 EEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC....EEEEE-STTTTST.TS-EEEEEE--- CS
         MTS  35 vlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle....vevvasdvleeve.ekkfdlivsNPP 106
                 +lD  cG G+ +++l +   +     vdvd ++++ a+ n++ank+     +++ a  ++++++ +++  ++v  PP
  KKY17964.1 389 LLDAYCGSGLFTITLSSLFTS--SLGVDVDPASIRYARLNASANKVPrtgfIDADAAKLFADIPfPADQTVMVIDPP 463
                 78999************9988..689********************9944444444444555554455566667777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 3654.94
//
Query:       KKY17965.1  [L=439]
Description: putative arp2 3 complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-87  292.3   0.0    9.1e-85  284.7   0.0    2.0  1  Actin            Actin
      0.006   15.4   0.0        0.3    9.9   0.0    2.3  2  MreB_Mbl         MreB/Mbl protein
  ------ inclusion threshold ------
        4.7    7.9   6.6        9.6    6.9   6.6    1.5  1  Nup_retrotrp_bd  Retro-transposon transporting motif


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.7   0.0   1.5e-88   9.1e-85       3     404 ..       4     429 ..       2     431 .. 0.91

  Alignments for each domain:
  == domain 1  score: 284.7 bits;  conditional E-value: 1.5e-88
       Actin   3 evsavVlDnGssttraGyagedaPkavipslvgkprgrkvea...................................klyvgdealt..krpelevrsp 64 
                 +++avV+DnG+++ ++G+ag+d+P  v+p++++ +     +                                    ++++gdeal+  + p++ +++p
  KKY17965.1   4 QTPAVVMDNGTGFSKLGFAGNDSPSFVFPTAIATKGAAGGSGgsgsgrpaisnkpsfltggagpgsqlsakrgtedlDFFIGDEALAaaNGPGYGIHYP 102
                 689******************************7777655557889999999********************************6665489******** PP

       Actin  65 vedGvvedwdaveelwehvlkeelkvdpeehpllltepplnppkqrekalEivfEkfkvpalylaksavlsafasgks........tglvvDsGasvts 155
                 +++G +e+wd++e+ w++++++ l+v+pe+h +lltepplnpp++re+++Ei+fE+f++++ly+a +avl++ as  s        tg v+DsG++vt+
  KKY17965.1 103 IRHGQIENWDHMERFWSNSIFKYLRVEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSskvtdrslTGTVIDSGDGVTH 201
                 **********************************************************************99888777888****************** PP

       Actin 156 vvpVldGyvLkkairrsdlgGkaLteqlkellssknvevtprylikkkkvveaessaekeelekltesyktleeeevleeiKesvcevsedpeg....d 250
                 v+pV +Gyv+  +i++ +++G+++t  +++ll+++                            + ++s       ++ e++Ke+ c+v  d+ +     
  KKY17965.1 202 VIPVAEGYVIGSSIKSIPIAGRDITYFVQSLLRER---------------------------GEADSS------LKTAEKVKEEYCYVCPDIVKefarF 267
                 **********************************7...........................122344......456789***********99855543 PP

       Actin 251 eeksssspeksYeLPDgs..eiklgeeRfkvpEiLFdpsligsesaleeekskllgiselivaainacdvdlrpeLlanivvtGGnsllpglteRleke 347
                  ++++   +++ + P+g+  +i++g eRf +pEi F+p+++ s+         l+ ++ ++   i+ +++d+r+ L++niv++GG++l++ +  Rl+++
  KKY17965.1 268 DREPDRFLKHTVTSPNGRsvQIDVGYERFLAPEIFFNPEIYSSDF--------LTPLPTVVDGVIQSSPIDVRRGLYKNIVLSGGSTLYKDFGRRLQRD 358
                 33444566667899***988999***************9988865........478******************************************* PP

       Actin 348 laql...............askgvkvkiiapeeerkysaWiGGSiLAslgtfqqlwvskqEYeEqGssvver 404
                 +++l                s g+ v++i+ + +++++ W+GGS+L+++++f++ + +k+EY+E G+s+v+r
  KKY17965.1 359 IKHLvdarirasearsggaRSGGLDVQVITHK-RQRHGPWFGGSLLGQTPEFRSYCHTKAEYDEIGPSIVRR 429
                 ****99998888877777666666*******9.9************************************87 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0     5e-05       0.3     147     214 ..     190     259 ..     149     267 .. 0.87
   2 !    3.1   0.0    0.0057        34     260     301 ..     323     363 ..     310     380 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 5e-05
                 EEEEEE-SS-EEEEEEETTEEEEE..EEES-SHHHHHHHHHHHHHHHHSEE--HHHHHHHHHHH-BSS-- CS
    MreB_Mbl 147 nmvvdiGggttevavislggivts..ksvrvaGdeldeaiikyirkkynlliGertaekikieigsavke 214
                   v+d G g t v  ++ g ++ s  ks+ +aG ++   + +++r++ +     +taek+k e  +++++
  KKY17965.1 190 GTVIDSGDGVTHVIPVAEGYVIGSsiKSIPIAGRDITYFVQSLLRERGEADSSLKTAEKVKEEYCYVCPD 259
                 4699*********999999998543389*********************************999888776 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.0057
                 HHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-E CS
    MreB_Mbl 260 vLektppeLaadivdrgivltGGgallkgldkllseetglpv 301
                 v+++ p +    ++ + ivl+GG++l k++ + l++ ++  v
  KKY17965.1 323 VIQSSPIDVRRGLY-KNIVLSGGSTLYKDFGRRLQRDIKHLV 363
                 55666666666655.569***************999887655 PP

>> Nup_retrotrp_bd  Retro-transposon transporting motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   6.6    0.0016       9.6      18      74 ..      17      75 ..       2      78 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0016
  Nup_retrotrp_bd 18 tnfsfaksaestpfgFgasqstp..qsanspsaitapalsqtPaifnvGss.gsqanivs 74
                         fa+ ++s  f F +  +t   + +  +s+++ pa+s+ P+++++G++ gsq  +++
       KKY17965.1 17 SKLGFAG-NDSPSFVFPTAIATKgaAGGSGGSGSGRPAISNKPSFLTGGAGpGSQLSAKR 75
                     3334433.46677888877666665777889******************98567766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3028.17
//
Query:       KKY17966.1  [L=407]
Description: putative asparaginase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-31  107.3   8.5    2.3e-17   63.0   0.3    2.1  2  Asparaginase_2  Asparaginase


Domain annotation for each model (and alignments):
>> Asparaginase_2  Asparaginase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.3   1.3e-21   2.3e-17       2      95 ..      15     105 ..      14     114 .. 0.89
   2 !   47.9   2.6   5.1e-17   9.2e-13     169     262 ..     215     326 ..     168     378 .. 0.72

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 1.3e-21
                     EEEEEEEEESE-G-HHHHHHHHHCHHHHHHHHHHHHHTT--HHHHHHHHHHHHHCTCCCSSSTTSS-BTTS---EEEEEEETTTTEEEEEEEES CS
  Asparaginase_2   2 vlvihGGAgsilktkereeavrkalkealeagykvLkeggsaldaVeaavrllEddplfnaGkGsvltedgeveldAsimdgktlraGaVagvk 95 
                     ++ +h GAg  +   ++e+   ++ ++a ++++ vLk+gg aldaVe a++++Ed   +n+G+Gs+l  dg+ve dA+i+d   + +GaV +v+
      KKY17966.1  15 AIFVHAGAGFHSY--SNEKVHLATCQDACKVAMTVLKNGGDALDAVELAIKVMEDREITNSGYGSNLSMDGTVECDATIVDHYGR-SGAVGAVS 105
                     5789*****8777..788888999*********************************************************5443.56655553 PP

  == domain 2  score: 47.9 bits;  conditional E-value: 5.1e-17
                     T......TT---EEEEEE-TTS-EEEEEEE--STTB-TTEE-STTSTTTSEEE........ETTTEEEEEEE-HHHHCCTTHH....HHHHHHHH CS
  Asparaginase_2 169 k......aklgTvGaValDsegnlAaaTSTgGltnklvGRvGDspiiGaGtYA........dnkvgAvsaTGkGeeiirella....adivalme 245
                     +      + + TvGa+a+D  gn+Aa+ S+gG+++k  GR G ++++G Gt +        + + +A  ++G+Ge++  +++a    +++ + ++
      KKY17966.1 215 DcvseedQIIDTVGAIAIDGFGNIAAGSSSGGIGMKHRGRTGPAALVGIGTAVipvdpedpNRTCVATVTSGTGEHMATTMAAstcsERVYSCVR 309
                     03333335566***************************************986556555435566789999****99876665111167777788 PP

                     TTT--HHHHHHHHHHCH CS
  Asparaginase_2 246 ykglsleeAaekvieek 262
                     ++g  +e A+e+  +++
      KKY17966.1 310 RRGGGIEYATEEEAMRT 326
                     89998888887655443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 3081.24
//
Query:       KKY17967.1  [L=389]
Description: putative 37s ribosomal protein s5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-14   51.2   0.0    1.9e-13   50.2   0.0    1.6  1  Ribosomal_S5    Ribosomal protein S5, N-terminal domain
    4.5e-12   45.3   0.1      2e-11   43.2   0.2    2.1  2  Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_S5  Ribosomal protein S5, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   2.1e-17   1.9e-13       2      64 ..     242     304 ..     241     305 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 2.1e-17
                   EEEEEEEEEEEEEETTEEEEEEEEEEEEEETTTEEEEEEEEESSHHHHHHHHHHHHHHTEEE- CS
  Ribosomal_S5   2 kekvlkikrvqkvtkgGrrtsfsalvvvGdgnGlvGlGvgkakevatAirkAiekAkknlvpv 64 
                   + k++  + v+++t+ G++++ + l+++G+gnGl+G+G+gk+ e ++A  ++  +A++ + p+
    KKY17967.1 242 RVKTIISHAVVNQTRLGKIRKQYFLTIAGNGNGLIGIGEGKSIESEEARLQSQYRAIRDMRPI 304
                   567888899***************************************************998 PP

>> Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.033     3e+02       2      17 ..     318     333 ..     317     333 .. 0.94
   2 !   43.2   0.2   2.3e-15     2e-11      34      72 .]     333     371 ..     330     371 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.033
                     EEETTEEEEEEE--TT CS
  Ribosomal_S5_C   2 gkfgavkvllkpaprG 17 
                     gk ga+++ l+ +p+G
      KKY17967.1 318 GKSGATELELYNRPPG 333
                     99************99 PP

  == domain 2  score: 43.2 bits;  conditional E-value: 2.3e-15
                     T--SEE---BS-SSHHHHHHHHHHHHHHTTTT-.-GGGG CS
  Ribosomal_S5_C  34 GikDvlakslgsrnpinvvkAtfeALkklrspeevaalR 72 
                     Gi+D+ ak+ + rnp+n+vkA+++AL+k+++peeva++R
      KKY17967.1 333 GIQDLAAKVTRARNPMNTVKAAVQALMKQKDPEEVARAR 371
                     9***********************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 2438.90
//
Query:       KKY17968.1  [L=617]
Description: putative protein methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-65  218.5   0.0    1.4e-64  217.1   0.0    1.7  1  PRMT5      PRMT5 arginine-N-methyltransferase
    7.6e-59  198.5   0.3    7.6e-59  198.5   0.3    1.5  2  PRMT5_C    PRMT5 oligomerisation domain
    5.5e-35  120.8   0.0    7.8e-35  120.3   0.0    1.2  1  PRMT5_TIM  PRMT5 TIM barrel domain


Domain annotation for each model (and alignments):
>> PRMT5  PRMT5 arginine-N-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.1   0.0   2.3e-68   1.4e-64       4     173 .]     162     384 ..     159     384 .. 0.97

  Alignments for each domain:
  == domain 1  score: 217.1 bits;  conditional E-value: 2.3e-68
                 HHHSCCGBT-EEEE--TTTS---HHHHHHHCC-CCHHHHHHHHHHHHHHHHCTCCGTCC...-EEEEEEES-TTSHHHHHHHHHHHHHCCCEEEEEEEE CS
       PRMT5   4 ekleseyedvlqapLqPlsdnLesatYevFEkdkvKYelYeeAiekalsdlkkekkkks..ekklvilvvGaGRGplvdralkaleetkvtkvkivavE 100
                 e++ ++y+d+lqapLqPl+ nLes+tYevFEkd++KYe+Ye+Ai+kal+d+ +++k +s  + ++v++vvGaGRGplv+ralka++e++  +++++a+E
  KKY17968.1 162 ERFGAGYQDYLQAPLQPLTVNLESITYEVFEKDPIKYEWYERAISKALRDWLEQRKPTSreDGRVVVAVVGAGRGPLVTRALKAADEAG-ISIDMWALE 259
                 78899**************************************************999877899*************************.99******* PP

                 S-HHHHHHHHHHHHHHTTCCGCEEEES-CCCCCHCC....................................................-ECEEEE---B CS
       PRMT5 101 KnpnavvtLqkkvneekWeekveviksdmrelkaee....................................................kvdllvsELLG 147
                 Knpna+v+L+++ ne+ W+++v++++sdmr++k +                                                      +d+l+sELLG
  KKY17968.1 260 KNPNAFVLLNRH-NETIWNNRVKLVQSDMRTWKGPWveedyrnkgmplpetsigqaissladvadsafavtatmprvdfaheptvkhyPIDILISELLG 357
                 *********999.99********************999*************************************************99********** PP

                 TTBCCCSHHHHHHCCGGGCECC.EEEE CS
       PRMT5 148 SfgdnELsPEcldgvqkflkee.gisi 173
                 Sf+dnELsPEcldgv+++l++  gisi
  KKY17968.1 358 SFADNELSPECLDGVTHLLNPVhGISI 384
                 ********************9989987 PP

>> PRMT5_C  PRMT5 oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.93   5.5e+03     142     157 ..     200     277 ..     184     292 .. 0.48
   2 !  198.5   0.3   1.3e-62   7.6e-59       1     177 []     387     617 .]     387     617 .] 0.97

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.93
                 EEEEEEEECSTTS-E............................................................... CS
     PRMT5_C 142 WYEWsvesfvylvls..............................................................h 157
                 WYE ++++     l+                                                              +
  KKY17968.1 200 WYERAISKALRDWLEqrkptsredgrvvvavvgagrgplvtralkaadeagisidmwaleknpnafvllnrhnetiwN 277
                 444444443332222444444444444444444444444444444444444444444444444444444444444444 PP

  == domain 2  score: 198.5 bits;  conditional E-value: 1.3e-62
                 EEEEEEEEEE-HHHHHHHHT.....-HHHCS-EEEB--S-EESSS...............................S-EEEEEEESS-TTSS....... CS
     PRMT5_C   1 sytsyiaPisapklyqklks.....ekaletpyvvklvkvdklse...............................kvkevweFehpneeke....... 56 
                 syt++++Pi apkl++++++     ++a+etpyvv++++vd+ls+                                v++vw+F+hpn+ ++       
  KKY17968.1 387 SYTAHLSPIGAPKLHADIMAqsisnPHAAETPYVVMFHAVDHLSTtvqsssvgnksptpnmdgadrtssmigppvpVVQTVWKFSHPNSVMQqmspdgp 485
                 7*****************99777766999************************************************************9999****** PP

                 .....-S-EEEEEEEEE-SSEEEEEEEEEEEEEEETTEEEE-SCCC...--TT-TS---EEEEEEEEEEE-TTEEEEEEEEEEEESSEEEEEEEEEECS CS
     PRMT5_C  57 ....eenersktlefkikekaeihGlagyFeavLYkdvelSilPetkeaktkdliSWfpiffPlkkpllvkddselevslwRktdekkvWYEWsvesfv 151
                     ++n+r+++++f+i++++++hG+agyFe+vLY  velS++P t+e+k+ ++iSWfp +fPlk+pl+v+d+s + +++wR+tde+kvWYEW+ve fv
  KKY17968.1 486 pvsnSHNSRHSVVSFRIRDRGVCHGIAGYFETVLYPGVELSTNPVTMEQKSAGMISWFPTYFPLKQPLYVPDNSVIVLHMWRQTDERKVWYEWIVEVFV 584
                 *************************************************************************************************** PP

                 TTS-E...............---BSGGGSS--E CS
     PRMT5_C 152 ylvls.......hvrvkvgvselhnvngraysi 177
                 +  +        ++++++g+selh++ ++a+++
  KKY17968.1 585 WDRVDaarakgpGKKLRIGMSELHSSIKEACLM 617
                 *7777899999999************9999876 PP

>> PRMT5_TIM  PRMT5 TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.0   1.3e-38   7.8e-35     144     256 .]       2     154 ..       1     154 [. 0.97

  Alignments for each domain:
  == domain 1  score: 120.3 bits;  conditional E-value: 1.3e-38
                 CCGHHHHHHHHHHHHTTT-TCEEEECC--CCGTSHHHHCCCCCTTEEEEEEECGG-EESTTT-EE--HHHHHHHHHHHHTT..-EEEEES......... CS
   PRMT5_TIM 144 dllstWelWntirtlcgyssrLsVaLeLpkelpskeelerWlaEPvkliilsasiFltnkkgypvLskahqallkeffkln..vkiiLsg......... 231
                 dl+ +W++Wn +r+lc+y+ rLs+aL+Lpk+lp    ++rW++EPvk++ l+  +F +n+kgypvLskahqal++++f+l+  ++++L+          
  KKY17968.1   2 DLFGSWDTWNVVRSLCKYHARLSIALRLPKHLPPVAIQSRWYSEPVKILSLDHGSFTKNAKGYPVLSKAHQALITRYFRLKtpPWFLLCHvdpipihtt 100
                 7899*********************************************************************************************** PP

                 .............................SSTTTTTCCCHCHHHHHHHHHHHHT CS
   PRMT5_TIM 232 .............................vekkaksskgdvkaylkyikyllkk 256
                                               +++a+ ++ d ++yl+y+++l+kk
  KKY17968.1 101 vdgptntnlssplasnppqsatdfptlaeAANQANGKHADGTPYLSYMRNLQKK 154
                 ***************************99888999999999*********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.56
# Mc/sec: 3315.16
//
Query:       KKY17969.1  [L=1207]
Description: putative glycerophosphocholine phosphodiesterase gde1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-71  239.0   0.0    1.3e-70  238.1   0.0    1.4  1  GDPD      Glycerophosphoryl diester phosphodiesterase family
    6.4e-27   94.0   0.1    2.7e-10   40.7   0.0    4.5  5  Ank_2     Ankyrin repeats (3 copies)
    1.2e-26   92.8   3.8    7.8e-12   45.5   0.1    5.7  5  Ank_4     Ankyrin repeats (many copies)
    1.1e-22   81.6  12.6    1.1e-11   45.3   0.4    3.8  4  SPX       SPX domain
    1.5e-18   64.9   3.4    0.00014   22.0   0.0    7.1  7  Ank_3     Ankyrin repeat
      2e-17   63.0   0.8    3.3e-08   33.6   0.0    5.8  6  Ank_5     Ankyrin repeats (many copies)
    4.1e-15   55.5   4.5     0.0004   20.7   0.0    6.4  6  Ank       Ankyrin repeat
  ------ inclusion threshold ------
      0.059   12.4   0.0       0.39    9.7   0.0    2.0  2  IMPDH     IMP dehydrogenase / GMP reductase domain
        1.1    9.5   3.6    1.5e+02    2.6   0.0    3.9  4  DUF4142   Domain of unknown function (DUF4142)
        2.1    8.5   4.9        1.6    8.8   0.1    3.1  3  DUF4351   Domain of unknown function (DUF4351)
        3.7    7.9   5.1        6.4    7.2   0.1    3.0  3  DUF1844   Domain of unknown function (DUF1844)


Domain annotation for each model (and alignments):
>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.1   0.0   7.8e-74   1.3e-70       1     258 [.     810    1133 ..     810    1134 .. 0.97

  Alignments for each domain:
  == domain 1  score: 238.1 bits;  conditional E-value: 7.8e-74
                  TTTTTTTSS........TTSHHHHHHHHHTT-SEEEEEEEE-TTS-EEE-SSSBSTTTCSCCCH.BGGGS-HHHHHTST.................. CS
        GDPD    1 HRGasgnlp........EnTlesfakAaelGadyiEfDvqlTkDgvpVvlHDfnldrttdvagrldvkdltleelkrld.................. 71  
                  HRG+++n+         EnT++sf++Aa lGa+y+EfD+qlTkD vpV++HDf + +t+ +a+   v+ ltle++ + +                  
  KKY17969.1  810 HRGLGKNIAgrsslqlgENTIQSFIAAANLGASYVEFDIQLTKDHVPVIYHDFLVSETGIDAP---VHTLTLEQFLHVNetsrtpresrpnspmpms 903 
                  ***************************************************************...******************************* PP

                  ...................................ECCTTCCCCSCCCSSGCC......B...BHHHHHHH.HHHCCSEEEEEEECCCCCCCHHHHH CS
        GDPD   72 ...................................kiakenkaqlsenrvrle......fpfptleevlkk.pqnvglnieikipmlseakeeeelq 126 
                                                     k+  ++++ ++++ ++++       pf tl+e++ k p++vg+n+e k+pml+e++eee + 
  KKY17969.1  904 fdprvndikamekrrlrslsvggpgseysewdmaeKM--KHTRDFKKKGFKGNsrgtiqAPFATLQEMFTKiPKDVGFNMEMKYPMLHESEEEEMDT 998 
                  *******************************997644..555688888888888888999************************************* PP

                  HTCHHHCCCCCSCHHTT..STTCSCEEEESTHHHHHHHHHTCTCTEEEEEEHHHHHHC-E....EECHCCCCCCCTCCCCHHCCCHCCCEB.CHHHH CS
        GDPD  127 ivkeilksvdeilkkvlkkadkrkvifssfnpdilkllrekqpklpllflteggteaead...ssleraakfakadallgevsavaeglgdpdlVkr 220 
                  +++e++ +vd++l+ v + a +rk+ifssfnpd + ll+ kqp++p+lflt+ gt+   d   ssl++a++fa+ ++llg+vsa+++++  p+lV+ 
  KKY17969.1  999 YAVELNSFVDTVLETVYDLAEGRKLIFSSFNPDVCLLLSFKQPSIPVLFLTDAGTSPVGDvraSSLQEAIRFASRWNLLGVVSAAEPLVISPRLVRV 1095
                  ********************************************************99999************************************ PP

                  HHHTT-EEEEBSB-THSHHHHHHHHCCC-SEEEES-HH CS
        GDPD  221 aksrglvvhvytvnnedeeemkrlleagvdgvitDfpd 258 
                  +k++glv++ y+  n+d  ++ ++++ g+d+vi+D++ 
  KKY17969.1 1096 VKESGLVCVSYGTLNNDPTKVELQVKEGIDAVIVDSVL 1133
                  ***********************************986 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.6   7.5e+03      43      72 ..     143     174 ..     136     182 .. 0.60
   2 ?   -2.5   0.0         5   8.2e+03      34      57 ..     253     283 ..     234     292 .. 0.59
   3 !   19.1   0.0   9.2e-07    0.0015      20      74 ..     366     436 ..     343     447 .. 0.79
   4 !   40.7   0.0   1.7e-13   2.7e-10      28      75 ..     457     510 ..     441     520 .. 0.81
   5 !   27.7   0.0   1.9e-09     3e-06      20      74 ..     516     580 ..     512     587 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.6
       Ank_2  43 klLlehad...ndgrtpLhyAarsghleivklL 72 
                 ++L +++d    ++ tpL +A ++   + +++L
  KKY17969.1 143 RYLASKVDpapFSNATPLLNALKK-INDYLEFL 174
                 555555443334456788887754.22555555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5
       Ank_2  34 akngnleivklLleh......ad.ndgrtpL 57 
                 ++++ + ++++Ll+       +d  + r+++
  KKY17969.1 253 ISAQARSCISALLDRiatlddLDdINKRNAI 283
                 4444446666666644342232233344444 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 9.2e-07
       Ank_2  20 adpnkngktaLhyAakngnleivklLleh..................adndgrtpLhyAarsghleivklLle 74 
                 +d+   g+t+Lh+ a++g + ++++++eh                  +d+dg+ pLh+++  gh+ + k Ll+
  KKY17969.1 366 KDM--SGRTPLHFGAHYGFRVVCEIIIEHlqswglfdvehgidgpnwQDYDGWAPLHLSVIGGHPLTTKALLD 436
                 344..69***********98889*****88888888877787776666699**************99999995 PP

  == domain 4  score: 40.7 bits;  conditional E-value: 1.7e-13
       Ank_2  28 taLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlek 75 
                  +L +A+k++ ++ivklL+++      +d++g+t+Lh+Aar+gh e+++lLle 
  KKY17969.1 457 HVLALAVKENFIDIVKLLVDAgvdinyQDEQGETALHVAARFGHVECARLLLEG 510
                 578999999999999****96656555669999*******99999***999964 PP

  == domain 5  score: 27.7 bits;  conditional E-value: 1.9e-09
       Ank_2  20 adpn...k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLle 74 
                 adp+   k  g+t+L++A+  gnl++v+ L+e+      +d +g+ +  +Aa  gh+ei++ L +
  KKY17969.1 516 ADPElgeKtYGWTPLFIACVDGNLNVVEVLIEYkvdldrLDLSGWAAKEHAALRGHIEIAQRLAD 580
                 5665554369**********************88775555588****9888889*******9974 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.43   7.1e+02      19      49 ..     259     294 ..     245     297 .. 0.75
   2 ?    4.8   0.0     0.027        44      27      46 ..     363     381 ..     342     390 .. 0.68
   3 !    8.5   0.0    0.0019       3.1      22      54 ..     402     434 ..     398     435 .. 0.81
   4 !   45.5   0.1   4.8e-15   7.8e-12       8      55 .]     462     508 ..     456     508 .. 0.90
   5 !   28.6   0.0   9.5e-10   1.6e-06       2      54 ..     527     578 ..     526     579 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.43
       Ank_4  19 lLlekgad....inaqdnrsGetalhi.Aakrgnve 49 
                 ++++   d    ++  d+++ ++a+h+ ++++g+ +
  KKY17969.1 259 SCISALLDriatLDDLDDINKRNAIHRlVIMIGRTR 294
                 45555555655678889999*******777988865 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.027
       Ank_4  27 inaqdnrsGetalhiAakrg 46 
                 + a  + sG+t+lh++a  g
  KKY17969.1 363 LLAK-DMSGRTPLHFGAHYG 381
                 5555.789*******99877 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0019
       Ank_4  22 ekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 e+g+d   + + +G+ +lh  + +g++  +k L
  KKY17969.1 402 EHGIDGPNWQDYDGWAPLHLSVIGGHPLTTKAL 434
                 89***66666***************97555555 PP

  == domain 4  score: 45.5 bits;  conditional E-value: 4.8e-15
       Ank_4   8 aaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 a++++ +++v+lL++ g+din+q +++Getalh Aa++g+ve+++lLl
  KKY17969.1 462 AVKENFIDIVKLLVDAGVDINYQ-DEQGETALHVAARFGHVECARLLL 508
                 555666899**************.***********************8 PP

  == domain 5  score: 28.6 bits;  conditional E-value: 9.5e-10
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 +t+L+ a+ +g+l +v+ L+e+++d+++  + sG+ a  +Aa+rg++ei++ L
  KKY17969.1 527 WTPLFIACVDGNLNVVEVLIEYKVDLDRL-DLSGWAAKEHAALRGHIEIAQRL 578
                 79**************************9.*******************9976 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.4   6.6e-15   1.1e-11       1      41 [.       1      40 [.       1      46 [. 0.86
   2 !   13.5   0.2   3.1e-05      0.05     185     217 ..      46      78 ..      43      89 .. 0.93
   3 !   30.1   0.2   2.8e-10   4.5e-07     330     383 ..      94     147 ..      84     148 .. 0.92
   4 ?   -2.6   0.1       2.5   4.1e+03     254     269 ..     586     607 ..     553     647 .. 0.51

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 6.6e-15
         SPX  1 MKFakeLeenlvpEWrdaYldYkqLKKlIkkvqreleslgl 41
                MKF++ L +n vpEW   Y+ Yk+LKKlIk  +  ++  g+
  KKY17969.1  1 MKFGHNLSRNQVPEWEGNYIKYKALKKLIKSAAENEK-DGQ 40
                ******************************9998444.344 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3.1e-05
         SPX 185 eFferLdseLnkvetFykakeeefterlesLrk 217
                  Ff  Ld  L+ v +Fy++k  eft+rl+ L++
  KKY17969.1  46 SFFWSLDRNLEDVGQFYSKKYSEFTRRLKLLED 78 
                 6****************************9986 PP

  == domain 3  score: 30.1 bits;  conditional E-value: 2.8e-10
         SPX 330 kkakkklkkafvelYrgLelLKsYqeLNrtAFrKIlKKfDKvtal.taskrymke 383
                 ++a++ l  a++el  + ++L+ Y e+Nr +F+KI+KK DK +a  +a+kry+ +
  KKY17969.1  94 QEAED-LMAALLELRGQFRKLQWYGEVNRRGFTKITKKLDKKVAVaHAQKRYLAS 147
                 67888.99***********************************988******975 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 2.5
         SPX 254 fessreldrgelse......ea 269
                  es  e+d +++s+      +a
  KKY17969.1 586 AESGGESDTSSSSStsppltSA 607
                 3333333332222222222222 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       6.3     1e+04       3      21 ..     157     174 ..     156     182 .. 0.75
   2 !    8.4   0.0    0.0023       3.8       2      24 ..     370     392 ..     369     395 .. 0.91
   3 ?    3.0   0.0      0.13   2.1e+02       1      23 [.     414     436 ..     414     442 .. 0.88
   4 !    7.9   0.1    0.0034       5.6       6      30 ..     459     482 ..     456     482 .. 0.92
   5 !   16.9   0.0   4.1e-06    0.0066       2      23 ..     488     509 ..     487     514 .. 0.91
   6 !   22.0   0.0   8.5e-08   0.00014       1      30 [.     525     553 ..     525     554 .. 0.96
   7 ?   -2.6   0.0       8.7   1.4e+04       8      21 ..     565     578 ..     565     581 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 6.3
       Ank_3   3 etpLhlAarsgnleivkfL 21 
                  tpL  A++ +n  +++fL
  KKY17969.1 157 ATPLLNALKKIND-YLEFL 174
                 699*999999886.67776 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0023
       Ank_3   2 GetpLhlAarsgnleivkfLlen 24 
                 G+tpLh+ a++g   +++ ++e+
  KKY17969.1 370 GRTPLHFGAHYGFRVVCEIIIEH 392
                 9*************999999996 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.13
       Ank_3   1 nGetpLhlAarsgnleivkfLle 23 
                 +G+ pLhl +  g++   k+Ll+
  KKY17969.1 414 DGWAPLHLSVIGGHPLTTKALLD 436
                 6999***********77999998 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0034
       Ank_3   6 LhlAarsgnleivkfLlenkgadvn 30 
                 L lA++ + ++ivk+L++  g+d+n
  KKY17969.1 459 LALAVKENFIDIVKLLVD-AGVDIN 482
                 67999*************.9****8 PP

  == domain 5  score: 16.9 bits;  conditional E-value: 4.1e-06
       Ank_3   2 GetpLhlAarsgnleivkfLle 23 
                 Get+Lh+Aar+g++e +++Lle
  KKY17969.1 488 GETALHVAARFGHVECARLLLE 509
                 9**************9****99 PP

  == domain 6  score: 22.0 bits;  conditional E-value: 8.5e-08
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G+tpL++A+  gnl++v+ L+e + +d++
  KKY17969.1 525 YGWTPLFIACVDGNLNVVEVLIE-YKVDLD 553
                 7**********************.9**986 PP

  == domain 7  score: -2.6 bits;  conditional E-value: 8.7
       Ank_3   8 lAarsgnleivkfL 21 
                 +Aa+ g++ei++ L
  KKY17969.1 565 HAALRGHIEIAQRL 578
                 69*******99887 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0087        14       9      46 ..     363     400 ..     355     403 .. 0.84
   2 ?    1.6   0.0      0.23   3.8e+02       9      29 ..     408     428 ..     401     439 .. 0.85
   3 !   23.5   0.0   3.1e-08   5.1e-05      11      53 ..     450     492 ..     447     492 .. 0.93
   4 !   33.6   0.0     2e-11   3.3e-08       1      53 [.     474     530 ..     474     530 .. 0.90
   5 !   13.7   0.0   3.7e-05      0.06      13      52 ..     525     562 ..     513     566 .. 0.83
   6 ?   -1.6   0.0       2.3   3.7e+03      22      36 ..     565     579 ..     564     582 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0087
       Ank_5   9 vnrldgggntpLhvAakygaadvvrlLlargadlnltd 46 
                 + ++d  g tpLh+ a+yg   v+++++++ ++++l d
  KKY17969.1 363 LLAKDMSGRTPLHFGAHYGFRVVCEIIIEHLQSWGLFD 400
                 556666788*******************9999999887 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.23
       Ank_5   9 vnrldgggntpLhvAakygaa 29 
                 +n++d +g  pLh+++ +g++
  KKY17969.1 408 PNWQDYDGWAPLHLSVIGGHP 428
                 799999999********9986 PP

  == domain 3  score: 23.5 bits;  conditional E-value: 3.1e-08
       Ank_5  11 rldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 r+  ++ ++L +A+k +  d+v+lL++ g+d+n +d++G+tal
  KKY17969.1 450 RQTSKSSHVLALAVKENFIDIVKLLVDAGVDINYQDEQGETAL 492
                 56677889*********************************98 PP

  == domain 4  score: 33.6 bits;  conditional E-value: 2e-11
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLl....argadlnltdsrG.ltal 53 
                 L+++g +d+n++d+ g+t+LhvAa+ g+ +++rlLl      +ad+ l ++ + +t+l
  KKY17969.1 474 LVDAG-VDINYQDEQGETALHVAARFGHVECARLLLegsaLQRADPELGEKTYgWTPL 530
                 89999.******************************8888788888888888878886 PP

  == domain 5  score: 13.7 bits;  conditional E-value: 3.7e-05
       Ank_5  13 dgggntpLhvAakygaadvvrlLlargadlnltdsrGlta 52 
                  g+  tpL +A+  g+++vv++L+++ +dl+  d +G+ a
  KKY17969.1 525 YGW--TPLFIACVDGNLNVVEVLIEYKVDLDRLDLSGWAA 562
                 333..**************************999999887 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 2.3
       Ank_5  22 vAakygaadvvrlLl 36 
                 +Aa +g+ +++++L 
  KKY17969.1 565 HAALRGHIEIAQRLA 579
                 699*********985 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       2.4     4e+03      16      31 ..     259     275 ..     247     276 .. 0.80
   2 ?    2.4   0.0      0.15   2.5e+02       2      13 ..     370     381 ..     369     404 .. 0.81
   3 !    7.5   0.0    0.0038       6.2       1      22 [.     414     435 ..     414     441 .. 0.89
   4 !    7.1   0.0     0.005       8.2       8      31 ..     461     485 ..     457     486 .. 0.76
   5 !   20.7   0.0   2.5e-07    0.0004       2      25 ..     488     512 ..     487     520 .. 0.81
   6 !   13.1   0.0   6.1e-05       0.1       1      31 [.     525     556 ..     525     557 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.4
                 HHHHHHHTT.TSTTCBT CS
         Ank  16 riiklLLhG.Anlnald 31 
                 ++i++LL++ A l+ ld
  KKY17969.1 259 SCISALLDRiATLDDLD 275
                 39*****8888887666 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.15
                 SBBHHHHHHHHT CS
         Ank   2 GnTPLHlAatng 13 
                 G+TPLH  a++g
  KKY17969.1 370 GRTPLHFGAHYG 381
                 9*****877655 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0038
                 TSBBHHHHHHHHTTHHHHHHHH CS
         Ank   1 dGnTPLHlAatngkkriiklLL 22 
                 dG+ PLHl + +g++  +k+LL
  KKY17969.1 414 DGWAPLHLSVIGGHPLTTKALL 435
                 89******999999*******9 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.005
                 HHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   8 lAatngkkriiklLL.hGAnlnald 31 
                 lA+ ++  +i+klL+  G ++n +d
  KKY17969.1 461 LAVKENFIDIVKLLVdAGVDINYQD 485
                 677444467******66*****998 PP

  == domain 5  score: 20.7 bits;  conditional E-value: 2.5e-07
                 SBBHHHHHHHHTTHHHHHHHHTT.T CS
         Ank   2 GnTPLHlAatngkkriiklLLhG.A 25 
                 G T+LH+Aa++g++++++lLL G A
  KKY17969.1 488 GETALHVAARFGHVECARLLLEGsA 512
                 99******************96633 PP

  == domain 6  score: 13.1 bits;  conditional E-value: 6.1e-05
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 +G+TPL +A+  g++++++ L+ +  +l+ ld
  KKY17969.1 525 YGWTPLFIACVDGNLNVVEVLIeYKVDLDRLD 556
                 6*********879999******7778988776 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.19     3e+02      86     120 ..     448     482 ..     225     495 .. 0.78
   2 ?    9.7   0.0   0.00024      0.39      82     157 ..    1023    1162 ..     909    1176 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.19
                 XBXTTSXB-EEEEE-SSTTHHHHHHHHHHTT-SEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  86 akdekgrllvgaavgvkedalervkalveagvdvl 120
                  + ++ +     a+ vke+ ++ vk lv+agvd+ 
  KKY17969.1 448 IRRQTSKSSHVLALAVKENFIDIVKLLVDAGVDIN 482
                 44455555555677888999*************85 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00024
                  S..................................................................TTSXBXTTSXB-EEEEE-SSTTHHHHHHHH CS
                  x..................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH   82 s..................................................................pnaakdekgrllvgaavgvkedalervkal 112 
                                                                                     p+ ++  k+  lv+ + g+ +++ ++v+  
  KKY17969.1 1023 LifssfnpdvclllsfkqpsipvlfltdagtspvgdvrasslqeairfasrwnllgvvsaaeplvisPRLVRVVKESGLVCVSYGTLNNDPTKVELQ 1119
                  055555555555555555555555555555555555555555555666666666666666666666666666667778899999************* PP

                  HHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  113 veagvdvlvvdsahghsekvleavkeikkkveeveviaGnvatae 157 
                  v++g+d+++vds  +  ++ ++a+ +  ++++  + + G++  a+
  KKY17969.1 1120 VKEGIDAVIVDSVLAIRKGLTKAIGKHVQQHQ--QQVKGDISVAK 1162
                  *************9999999999977666664..56778776544 PP

>> DUF4142  Domain of unknown function (DUF4142)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.6       5.3   8.7e+03      45      78 ..     216     248 ..     208     252 .. 0.59
   2 ?    2.2   0.0      0.12     2e+02      98     139 .]     537     578 ..     533     578 .. 0.86
   3 ?    2.6   0.0     0.089   1.5e+02      24      63 ..     620     659 ..     615     677 .. 0.77
   4 ?    2.6   0.1     0.091   1.5e+02     101     131 ..    1166    1196 ..    1140    1204 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.3
     DUF4142  45 tkaneeLkalaskkgvtlpdsteldaeaqakldk 78 
                 t ++++L ++ +k++ tl+d t+ +a +q + d 
  KKY17969.1 216 TDNADQLLEALDKNAGTLSD-TKESAVQQLMKDL 248
                 55667888888888888886.4444444444443 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.12
     DUF4142  98 ahqkavellekaaasgkdaelkafaektlptlqaHleeaeal 139
                 +  ++ve+l ++  + +  +l  +a+k + +l+ H e a++l
  KKY17969.1 537 GNLNVVEVLIEYKVDLDRLDLSGWAAKEHAALRGHIEIAQRL 578
                 55667888888888999999*******************987 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.089
     DUF4142  24 AlqkaknpevkaFAqqmvadhtkaneeLkalaskkgvtlp 63 
                 + ++ +++ vk+F+++ ++d +++  +L ++  +kg+ + 
  KKY17969.1 620 GSSTKTTEPVKSFGHRYLTDDSMVLVSLGTMDMRKGMPAV 659
                 556667788***************9999999998888665 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.091
     DUF4142  101 kavellekaaasgkdaelkafaektlptlqa 131 
                  +++e+l +  asg+d  +k++aek+ p l+a
  KKY17969.1 1166 RQLEALAEGRASGDDGPNKTAAEKMEPLLEA 1196
                  567888888999***************9987 PP

>> DUF4351  Domain of unknown function (DUF4351)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00099       1.6      13      49 ..      73     106 ..      70     109 .. 0.95
   2 ?   -0.8   0.1         1   1.6e+03      10      37 ..     220     247 ..     211     275 .. 0.77
   3 ?   -1.3   0.2       1.4   2.3e+03      16      44 ..    1139    1173 ..    1132    1174 .. 0.51

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00099
     DUF4351  13 lrlLtrrfGelspeleeqIksLsleqLEdLgealLDF 49 
                 l+lL+ r G +sp     +++L +++ EdL  alL++
  KKY17969.1  73 LKLLEDRYGGVSPV---AVRGLDAQEAEDLMAALLEL 106
                 789***********...9*****************87 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1
     DUF4351  10 sLilrlLtrrfGelspeleeqIksLsle 37 
                 + +l  L +  G+ls++ e+ +++L  +
  KKY17969.1 220 DQLLEALDKNAGTLSDTKESAVQQLMKD 247
                 5677788899999999977999998654 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.4
     DUF4351   16 LtrrfGelspeleeqIks.L.....sleqLEdLge 44  
                  Lt+ +G+  ++ ++q+k+       ++ qLE+L+e
  KKY17969.1 1139 LTKAIGKHVQQHQQQVKGdIsvaknEIRQLEALAE 1173
                  66666666666666665312000003456666665 PP

>> DUF1844  Domain of unknown function (DUF1844)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.17   2.7e+02      53      73 .]      90     110 ..      87     110 .. 0.90
   2 ?   -3.0   0.4         6   9.7e+03      48      69 ..     227     248 ..     221     249 .. 0.82
   3 ?    7.2   0.1    0.0039       6.4      17      48 ..    1142    1173 ..    1132    1177 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.17
     DUF1844  53 nLdeeEerlLeealyeLrlry 73 
                  Ld++E++ L +al eLr ++
  KKY17969.1  90 GLDAQEAEDLMAALLELRGQF 110
                 59****************776 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6
     DUF1844  48 eKtkgnLdeeEerlLeealyeL 69 
                 +K +g L+++ e+ +++++ +L
  KKY17969.1 227 DKNAGTLSDTKESAVQQLMKDL 248
                 6899999999999999998887 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0039
     DUF1844   17 aLGelpdpetgkkekdlelAkqsIdlLamLke 48  
                  a G++ ++ +++ + d+ +Ak+ I  L+ L+e
  KKY17969.1 1142 AIGKHVQQHQQQVKGDISVAKNEIRQLEALAE 1173
                  689999999*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.54
# Mc/sec: 6740.25
//
Query:       KKY17970.1  [L=643]
Description: hypothetical protein UCRPC4_g05172 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-16   60.2   0.4    1.7e-16   60.2   0.4    2.9  3  Clr5      Clr5 domain
    7.1e-16   58.3   3.3    0.00063   20.0   0.0    5.1  5  TPR_12    Tetratricopeptide repeat
    3.7e-05   23.4   1.8        3.3    7.7   0.1    5.3  5  TPR_10    Tetratricopeptide repeat
     0.0011   18.7   0.4      0.019   14.8   0.0    3.1  3  TPR_1     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   15.7   8.5       0.07   13.3   0.1    4.5  5  TPR_2     Tetratricopeptide repeat
      0.012   15.0   6.2       0.12   11.7   0.1    2.7  3  TPR_MalT  MalT-like TPR region
       0.11   12.1   0.3       0.85    9.1   0.1    2.3  2  ERAP1_C   ERAP1-like C-terminal domain
       0.34   11.8   1.7    1.3e+02    3.8   0.1    3.9  3  TPR_14    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Clr5  Clr5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.4   7.6e-20   1.7e-16       2      54 .]      11      63 ..      10      63 .. 0.98
   2 ?   -2.4   0.1       2.6   5.7e+03      34      47 ..     343     356 ..     342     357 .. 0.88
   3 ?   -0.9   0.1      0.92   2.1e+03      22      33 ..     600     611 ..     595     623 .. 0.79

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 7.6e-20
        Clr5  2 eedWeahkatIrrLYleenrsLkdvmeiMeeehgFkatkrqyktrfkkWgfrk 54
                +edW + ++ Ir+LY+  +r+Lkdv +i+ee+h+F at r+yk+r++ W+f+k
  KKY17970.1 11 PEDWLRVQPHIRQLYVVDQRPLKDVSRILEEQHNFFATQRMYKSRIQAWKFDK 63
                69*************************************************98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.6
        Clr5  34 hgFkatkrqyktrf 47 
                 h F+a+   y++r+
  KKY17970.1 343 HLFQASIFHYQKRL 356
                 789********997 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.92
        Clr5  22 sLkdvmeiMeee 33 
                 +L+++ ++M+++
  KKY17970.1 600 TLEQLSDVMKKR 611
                 799999999986 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.7   0.00016      0.37       9      76 ..     346     413 ..     338     414 .. 0.88
   2 !    7.4   0.0    0.0024       5.5      18      46 ..     397     425 ..     395     429 .. 0.91
   3 ?    0.7   0.1       0.3   6.7e+02      17      56 ..     444     476 ..     440     483 .. 0.71
   4 !   20.0   0.0   2.8e-07   0.00063      18      68 ..     487     537 ..     470     544 .. 0.90
   5 !   19.8   0.1   3.1e-07   0.00069       7      67 ..     560     620 ..     547     623 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
      TPR_12   9 laavlrrlgrydeAlellekaleia.rrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                  a++ ++++r+d A+++ ++a ei+ + ++ ++++l+       g++     +y+ A ++l+++ +ia+
  KKY17970.1 346 QASIFHYQKRLDLAERNQNAAAEIFcTMIQSHNKYLLPGLAVLTGIMT-SHHEYKLAASFLQQCCQIAQ 413
                 7999*****************************988888888888886.555************99986 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0024
      TPR_12  18 rydeAlellekaleiarrllGpdhpltat 46 
                 +y  A ++l+++ +ia+  lGp+hplt++
  KKY17970.1 397 EYKLAASFLQQCCQIAQGCLGPEHPLTIA 425
                 6889999*******************987 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.3
      TPR_12  17 grydeAlellekaleiarrllGpdhpltattlrnLgrlyr 56 
                  r+d A++++e a   +      dhp+t+   +  ++ ++
  KKY17970.1 444 DRLDRAIRHFELA---W----SADHPNTIMLKHLRAWELL 476
                 5677777777777...6....3788888888888887765 PP

  == domain 4  score: 20.0 bits;  conditional E-value: 2.8e-07
      TPR_12  18 rydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlell 68 
                 +  eA+++ ++ l ia+r+ Gp+++ t + lr L+r++ +++++ +A++l 
  KKY17970.1 487 KVIEAEKIIREQLPIAERVMGPNNYVTTWMLRSLSRACKEQKKLGDAINLM 537
                 5689********************************************986 PP

  == domain 5  score: 19.8 bits;  conditional E-value: 3.1e-07
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlel 67 
                 ++l+++++  g+++ A++++++al  + + lG  h lt  tl  L+++  ++gr +e  +l
  KKY17970.1 560 RRLGEMYQLSGNLEMAEQHFDEALWGQIKMLGVRHGLTMYTLEQLSDVMKKRGRMKEEAQL 620
                 479********************99999999*****************9999999987766 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.041        93      18      41 ..     398     421 ..     395     422 .. 0.89
   2 ?   -4.0   0.0       6.9   1.6e+04      16      28 ..     444     456 ..     441     458 .. 0.75
   3 ?    3.0   0.0     0.045     1e+02      18      39 ..     488     509 ..     486     510 .. 0.91
   4 ?    3.8   0.0     0.025        55       5      42 .]     517     554 ..     513     554 .. 0.88
   5 !    7.7   0.1    0.0015       3.3       8      29 ..     562     583 ..     560     594 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.041
      TPR_10  18 ydeAealleealairrrllGpdHP 41 
                 y+ A  +l+++ +i +  lGp+HP
  KKY17970.1 398 YKLAASFLQQCCQIAQGCLGPEHP 421
                 56688899***************9 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 6.9
      TPR_10  16 grydeAealleea 28 
                  r+d+A +++e a
  KKY17970.1 444 DRLDRAIRHFELA 456
                 5788898888866 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.045
      TPR_10  18 ydeAealleealairrrllGpd 39 
                   eAe++ +e l i +r+ Gp+
  KKY17970.1 488 VIEAEKIIREQLPIAERVMGPN 509
                 679*****************98 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.025
      TPR_10   5 lnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 l  L++a  +++++ +A +l+  a++++  +lGp HPd
  KKY17970.1 517 LRSLSRACKEQKKLGDAINLMSLAIDRQMWTLGPYHPD 554
                 678999***************99999998899999987 PP

  == domain 5  score: 7.7 bits;  conditional E-value: 0.0015
      TPR_10   8 LanalrqrgrydeAealleeal 29 
                 L+ +++  g+++ Ae++++eal
  KKY17970.1 562 LGEMYQLSGNLEMAEQHFDEAL 583
                 9********************9 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0         1   2.3e+03       8      21 ..     347     360 ..     343     362 .. 0.74
   2 ?   -0.6   0.0      0.62   1.4e+03      15      27 ..     444     456 ..     439     456 .. 0.82
   3 !   14.8   0.0   8.4e-06     0.019       6      28 ..     561     583 ..     558     584 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1
                 HHHHHHTT-HHHHH CS
       TPR_1   8 GnayfklgkydeAl 21 
                 + ++++++++d A+
  KKY17970.1 347 ASIFHYQKRLDLAE 360
                 56778888888886 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.62
                 T-HHHHHHHHHHH CS
       TPR_1  15 gkydeAleyyekA 27 
                  ++d A+ ++e A
  KKY17970.1 444 DRLDRAIRHFELA 456
                 6899******965 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 8.4e-06
                 HHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekAL 28 
                 +lG +y+  g+++ A++++++AL
  KKY17970.1 561 RLGEMYQLSGNLEMAEQHFDEAL 583
                 79********************9 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.71   1.6e+03       6      30 ..     345     369 ..     340     371 .. 0.78
   2 ?   -1.9   0.0       2.2     5e+03      16      31 ..     397     412 ..     394     414 .. 0.84
   3 ?    2.7   0.0     0.074   1.7e+02      11      27 ..     440     456 ..     438     456 .. 0.86
   4 ?    0.6   0.0      0.35   7.7e+02       6      28 ..     519     541 ..     517     544 .. 0.85
   5 ?   13.3   0.1   3.1e-05      0.07       5      28 ..     560     583 ..     557     583 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.71
       TPR_2   6 nlGlayyklgdyeeAleafekAlel 30 
                  ++ +  ++++++ A++  ++A e+
  KKY17970.1 345 FQASIFHYQKRLDLAERNQNAAAEI 369
                 5677888999999999888888776 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.2
       TPR_2  16 dyeeAleafekAleld 31 
                 +y+ A+ +++++ +++
  KKY17970.1 397 EYKLAASFLQQCCQIA 412
                 7999999999999886 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.074
       TPR_2  11 yyklgdyeeAleafekA 27 
                 +++++++++A+++fe A
  KKY17970.1 440 HIEADRLDRAIRHFELA 456
                 67889*********966 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.35
       TPR_2   6 nlGlayyklgdyeeAleafekAl 28 
                  l +a+ +++++ +A++++  A+
  KKY17970.1 519 SLSRACKEQKKLGDAINLMSLAI 541
                 588999**********9998877 PP

  == domain 5  score: 13.3 bits;  conditional E-value: 3.1e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAl 28 
                  +lG+ y  +g++e A+++f++Al
  KKY17970.1 560 RRLGEMYQLSGNLEMAEQHFDEAL 583
                 69*********************8 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   1.4     0.008        18      32     119 ..     332     421 ..     324     462 .. 0.61
   2 ?   -0.8   0.0      0.35   7.9e+02      74     145 ..     460     537 ..     437     544 .. 0.58
   3 ?   11.7   0.1   5.6e-05      0.12      46     113 ..     562     631 ..     551     639 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.008
    TPR_MalT  32 peddllariaatavlGeasllqGdleaAlqalqeaekl....arqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlp 119
                 +ed+l+ar++ +++++ ++++q +l+ A++  ++a ++    +++++++   l+ l  ++ i +   + + A+   +q  q a+   +++ p
  KKY17970.1 332 QEDALPARWLSHLFQASIFHYQKRLDLAERNQNAAAEIfctmIQSHNKYL--LPGLAVLTGIMTSHHEYKLAASFLQQCCQIAQGCLGPEHP 421
                 57888899999999999999999888888877766654222255555555..4444444555555556666666666666666655555444 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.35
    TPR_MalT  74 dslhvallallqqaeilvaq......GrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqhl 145
                 d++++ +l  l+ +e+l+a        +  eA+++ ++ l  a++  +++  +  ++l++l++   E+ +L  A +  
  KKY17970.1 460 DHPNTIMLKHLRAWELLRASadsrhpEKVIEAEKIIREQLPIAERVMGPNNYVTTWMLRSLSRACKEQKKLGDAINLM 537
                 444444444444444444431111113455677777777777777777777777777777777777776666665554 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 5.6e-05
    TPR_MalT  46 lGeasllqGdleaAlqalqeae.klarqadslhv.allallqqaeilvaqGrLheAletyeqalqlateq 113
                 lGe ++l G+le A+q++ ea    +++ +  h  ++++l q++++  ++Gr++e ++++e +  l +e+
  KKY17970.1 562 LGEMYQLSGNLEMAEQHFDEALwGQIKMLGVRHGlTMYTLEQLSDVMKKRGRMKEEAQLQELIDNLLEES 631
                 8********************944789999999879******************9999998776666665 PP

>> ERAP1_C  ERAP1-like C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00038      0.85     178     220 ..      66     108 ..      51     122 .. 0.89
   2 ?   -0.3   0.0      0.28   6.3e+02     113     154 ..     454     498 ..     436     526 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00038
                 -HHHHHHHHHHHHC-SSHHHHHHHHHHHCC-S-HHHHHHHHHH CS
     ERAP1_C 178 geaewdallerykdtsapsekeaalralaatpdpellerllnf 220
                  e+ew ++++++k+  + ++ke + + ++ t +++ ++++l++
  KKY17970.1  66 KEDEWRQIIAMWKRRRDVEGKESIFKIRGRTINAAKIRKFLKR 108
                 689*********888777*********************9975 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.28
                 HHHH.T.T.TS-HHHHHH.HHHHHHHHHTT-HHHHHHHHHHHHHH CS
     ERAP1_C 113 klgw.epg.eshldaqlr.slllsaacaagdpevveearklfkaw 154
                 +l+w ++  ++ + + lr  +ll+a +++ +pe v ea k+ ++ 
  KKY17970.1 454 ELAWsADHpNTIMLKHLRaWELLRASADSRHPEKVIEAEKIIREQ 498
                 578853334566778888899999999999***999999998876 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2     0.069   1.5e+02      12      35 ..     441     465 ..     438     480 .. 0.70
   2 ?    0.2   0.0      0.84   1.9e+03       3      30 ..     516     543 ..     514     550 .. 0.83
   3 ?    3.8   0.1     0.057   1.3e+02       5      28 ..     560     583 ..     556     583 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.069
      TPR_14  12 lalGdpdeAiallrra.lalaPdda 35 
                  +++++d+Ai++++ a  a++P+  
  KKY17970.1 441 IEADRLDRAIRHFELAwSADHPNTI 465
                 67899*********98355678543 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.84
      TPR_14   3 allalaeallalGdpdeAiallrralal 30 
                 +l+ l +a+ ++ ++ +Ai+l   a+++
  KKY17970.1 516 MLRSLSRACKEQKKLGDAINLMSLAIDR 543
                 567789999**********998888776 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.057
      TPR_14   5 lalaeallalGdpdeAiallrral 28 
                 ++l+e +  +G+++ A++++++al
  KKY17970.1 560 RRLGEMYQLSGNLEMAEQHFDEAL 583
                 789999***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.50
# Mc/sec: 3906.34
//
Query:       KKY17971.1  [L=304]
Description: putative biotin synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.7e-24   83.9   0.2    1.9e-23   82.4   0.1    1.8  2  BATS         Biotin and Thiamin Synthesis associated domain
    3.8e-15   56.7   0.1    2.4e-14   54.0   0.1    1.9  2  Radical_SAM  Radical SAM superfamily


Domain annotation for each model (and alignments):
>> BATS  Biotin and Thiamin Synthesis associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.47   4.2e+03      70      85 ..      71      86 ..      52      87 .. 0.80
   2 !   82.4   0.1   2.1e-27   1.9e-23       1      85 [.     181     271 ..     181     272 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.47
                T-TCCCCHHHHHHTT- CS
        BATS 70 grsleedvkmleelGl 85
                 r+++e+v+ +++lGl
  KKY17971.1 71 LRDIKEMVQGVRALGL 86
                4778888888888887 PP

  == domain 2  score: 82.4 bits;  conditional E-value: 2.1e-27
                 E--B----TCCCC...........HHHHHHHHHHSTTSE.CCCTCHH-HHHHHH.HHHCCT--EEE-C---TTTGGGSESSTT-TCCCCHHHHHHTT- CS
        BATS   1 siprlrpikdtpl...........lkiiaalRlllPkag.illsgResaefrdq.lllklGansisagsktevggyaflttdgrsleedvkmleelGl 85 
                 +++ l+pik+tpl           l++ia++R+++Pk+  ++++gR  +++++q l++++Gan+i++g+k       +ltt+++ +eed +m+e++Gl
  KKY17971.1 181 PVNTLVPIKGTPLfkstrikfdavLRTIATARMVMPKSIiRIAAGRIDMSEEKQiLCFMAGANAIFTGEK-------MLTTNCNGWEEDKAMFERWGL 271
                 89*******************************************************************9.......********************8 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.1   2.7e-18   2.4e-14       4     159 ..       9     163 ..       6     168 .. 0.83
   2 ?    0.4   0.0     0.083   7.4e+02      32      73 ..     202     243 ..     180     289 .. 0.62

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 2.7e-18
                  ESEESS--TTTSCCTT.HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE.......SSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHH CS
                  xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   4 trgCnlrCsfCarpet.vrregrgrslsveeileevkelkaekgvkevilg.......ggepllypdfvellerlaklavpgiritvetngtlpdeek 93 
                  t gC+ +Cs+Ca+++      + +++++v+++l  +k + + +g   + +g       g   +l +d+ e +   ++l   g++++v+   +   +++
   KKY17971.1   9 TGGCSEDCSYCAQSSRyNTGLKASKIVTVDSVLTAAKNA-KANGSTRFCMGaawrdmrGRKSNL-RDIKEMVQGVRAL---GLETCVTLGMID--DKQ 99 
                  78************999999999****************.577899999994555554443333.6677777777777...777777666666..9** PP

                  HHHHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  94 lerllelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendee 159
                  +++l+e g++ +++++++  +  + + +  + +++e+l++l   r+agik+++ +i+gl    +++
   KKY17971.1 100 AKELKESGLTAYNHNVDTSREH-YPNVI-TTRSYDERLATLGHVRDAGIKVCTGGILGLNEKPEDH 163
                  **********************.*****.99*******************8888888887666665 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.083
                  HHHHHHHHHHH.HHTTSEEEEEESSTGGGSTTHHHHHHHHHHT CS
                  xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  32 eeileevkelk.aekgvkevilgggepllypdfvellerlakl 73 
                  + +l+ +  ++ + + +  + +  g  ++  +++ l +++ ++
   KKY17971.1 202 DAVLRTIATARmVMP-KSIIRIAAGRIDMSEEKQILCFMAGAN 243
                  344444444442222.555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.31s 00:00:00.82 Elapsed: 00:00:00.49
# Mc/sec: 1856.90
//
Query:       KKY17972.1  [L=1179]
Description: putative oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-51  175.5   0.1      2e-51  174.8   0.1    1.3  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    1.5e-44  151.8   0.1    2.3e-44  151.2   0.1    1.3  1  adh_short      short chain dehydrogenase
    4.1e-11   43.1   0.2    7.7e-11   42.2   0.2    1.4  1  KR             KR domain
  ------ inclusion threshold ------
      0.049   13.0   0.0      0.084   12.3   0.0    1.3  1  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
       0.12   11.9   0.1        0.3   10.5   0.1    1.7  1  Epimerase      NAD dependent epimerase/dehydratase family
       0.13   12.8   0.0       0.28   11.8   0.0    1.5  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
       0.15   12.8   1.1       0.59   10.9   1.1    2.1  1  Ldt_C          L,D-transpeptidase C-terminal domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.8   0.1   7.7e-55     2e-51       4     234 .]      79     319 ..      75     319 .. 0.92

  Alignments for each domain:
  == domain 1  score: 174.8 bits;  conditional E-value: 7.7e-55
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE......EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev......lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94 
                   +g+G  +A+al ++Ga v + d+ ++  ++  ++++e+ +e+        +D t++++++++++e++++  +lD+++ +a+i +   +p+le +r++
    KKY17972.1  79 RGLGLTMAQALYQAGAIVHCLDRMDRPYEEFCKVQRETHRELggelhyHCIDLTETAAMQEMIAEIARERSRLDGCIAAAAIQQV--TPALEYERND 173
                   8***********************999666666666555442223364667**********************************..********** PP

                   HHHHHHHHTHHHHHHHHHHHHHCTSC...CEEEEEEEGGGTSBSTTTT..HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG.GGGSTTH CS
  adh_short_C2  95 fdraldvnlyslfllakaalplmkeg...gsivnlssvgaervvpnyn..aygaaKaalealtrylAvelgpkgiRvNavspgpikTla.asgikgf 185
                   ++++ld+n +++f++a+a++++m e    gsi+ ++s++a ++ ++    +y+ +Kaa+++l+r+lA+e+g++giRvNa +pg i T++  ++++++
    KKY17972.1 174 VNKMLDINYTAVFMTAQAVAKAMYEYqtpGSILLVASMSAFVANKGLRspVYNSSKAAVVQLARNLAMEWGHDGIRVNALCPGNILTPMvKKNFDDE 270
                   *********************87766689**************9999889***************************************66678889 PP

                   HHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 186 delleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                   + l+e ++++ +l+r+  pee   aa+f +sd++s++tG+  vvDgG+t
    KKY17972.1 271 PGLEELWKQNNMLNRISHPEEYRGAAIFALSDASSFMTGASWVVDGGYT 319
                   99**********************************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.2   0.1   9.2e-48   2.3e-44       1     194 [.      70     270 ..      70     271 .. 0.94

  Alignments for each domain:
  == domain 1  score: 151.2 bits;  conditional E-value: 9.2e-48
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT....TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGG CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee....gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfse 95 
                 kvv++tG+++G+G+ +a++l+++Ga v ++dr +++ ee +k  +e+    g ++++  +D+t+ +++++++++++ +  +ld  ++ A+i++++p+ e
  KKY17972.1  70 KVVVITGGGRGLGLTMAQALYQAGAIVHCLDRMDRPYEEFCKVQREThrelGGELHYHCIDLTETAAMQEMIAEIARERSRLDGCIAAAAIQQVTPALE 168
                 89********************************99998877666555558999********************************************* PP

                 CSHHHHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TT..BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHC CS
   adh_short  96 lseeewervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvag..vaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelr 191
                 ++ +++++++++N+t+vf++++av++am   q  G+I  v+S+ ++v+++g   ++Y +sKaav++l+r+la+e+  +girvna++PG + T+m+k+  
  KKY17972.1 169 YERNDVNKMLDINYTAVFMTAQAVAKAMYeYQTPGSILLVASMSAFVANKGlrSPVYNSSKAAVVQLARNLAMEWGHDGIRVNALCPGNILTPMVKKNF 267
                 *****************************8899************9887762269*****************************************998 PP

                 THH CS
   adh_short 192 eke 194
                 ++e
  KKY17972.1 268 DDE 270
                 875 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.2     3e-14   7.7e-11       3     145 ..      72     219 ..      70     241 .. 0.82

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 3e-14
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHH.HHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedska.liaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 ++itGG  gLGl++a+ l++ ga  + +l R  ++ e+  + + ++ ++lg e ++  +D+++ +a++++++ei +e +++ G+i aA + + ++  e 
  KKY17972.1  72 VVITGGGRGLGLTMAQALYQAGAI-VHCLDRMDRPYEEFCKvQRETHRELGGELHYHCIDLTETAAMQEMIAEIARERSRLDGCIAAAAIQQVTPALEY 169
                 79********************85.4556666555555444144455667************************************************* PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT.....S--SEEEEEEEHHHHH--TT CS
          KR 101 taedleqvlapKvkGawnLhelled.....esldffvlfSSiagllgsag 145
                 + +d++++l    +++    +++++     ++   ++l++S+++++ ++g
  KKY17972.1 170 ERNDVNKMLDINYTAVFMTAQAVAKamyeyQTPGSILLVASMSAFVANKG 219
                 ********998888887777777775554566677889999999888877 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.3e-05     0.084       2      75 ..      74     145 ..      73     167 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.3e-05
                    EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT CS
  GDP_Man_Dehyd   2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevq 75 
                    iTG+    G  +a+ L + g  vh ++r +  +  ++  +++++ + el ++l+ h  Dlt+++++++++ae+ 
     KKY17972.1  74 ITGGGRGLGLTMAQALYQAGAIVHCLDRMDRPY--EEFCKVQRETHRELGGELHYHCIDLTETAAMQEMIAEIA 145
                    7887777899*****************999874..5777888899999**********************9984 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00012       0.3       1      99 [.      72     185 ..      72     272 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..........EEEE--TT-HHHHHHHHHH....H.T-SEEEE--S---HHHHHHSH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl..........elveldltdrsalerlfke....e.qpdavihlAavggvaassedp 84 
                 +++tG+   +G  +++al ++g  v++ldr  +  ++ ++ +           + + +dlt+ +a++++++e      + d  i +Aa++ v    e+ 
  KKY17972.1  72 VVITGGGRGLGLTMAQALYQAGAIVHCLDRMDRPYEEFCKVQRethrelggelHYHCIDLTETAAMQEMIAEiareRsRLDGCIAAAAIQQVTPALEYE 170
                 689**************************998877777766667899******99*********99999875333223788899999877776666666 PP

                 HHHHHHHTHHHHHHH CS
   Epimerase  85 adfieknlqgtlnll 99 
                    ++k l ++++ +
  KKY17972.1 171 RNDVNKMLDINYTAV 185
                 655555555555444 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00011      0.28       2      60 ..      72     127 ..      70     129 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
                 EEEECSS.HHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECS CS
   Pyr_redox   2 vvvvGgG.yiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievlln 60 
                 vv+ GgG  +gl +A+al + g+ V++++r+d++     ee+ k+ +e ++++g e++++
  KKY17972.1  72 VVITGGGrGLGLTMAQALYQAGAIVHCLDRMDRPY----EEFCKVQRETHRELGGELHYH 127
                 6777888469*************************....**************9999986 PP

>> Ldt_C  L,D-transpeptidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.1   0.00023      0.59       9      66 ..     531     588 ..     527     589 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00023
       Ldt_C   9 dgsryvEvHqPLSrseeddpqtvpltlskelkkfledaevdkakvkaalerrsGmPve 66 
                  g + v vH+P S +   ++++++    + +++ +++++ + +  ++a +++sGmPv+
  KKY17972.1 531 QGDVSVDVHRPYSFQVPPETEEMSTIDANGIRETVHAQQYNMTSPHEATSHHSGMPVH 588
                 57889**********999999999999999**************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.51
# Mc/sec: 6997.99
//
Query:       KKY17973.1  [L=589]
Description: putative siderochrome-iron [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-11   43.9  66.7    1.3e-09   37.5  64.1    2.3  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5  64.1   7.2e-14   1.3e-09       5     352 ..      69     493 ..      66     494 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 7.2e-14
       MFS_1   5 aflsalarsilgpalpl.alaedlg.......ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvl 94 
                 ++ +a+ + ++++++ +  ++++l+       +s+ +i ++  l ++  +++ lp++ + + +Gr   +l+ + +++lg+++l+ + ++    +++  l
  KKY17973.1  69 YCTYAWIWVCFFMLALQqGMTTQLNakayasfSSAPQITTASILASIIGGILKLPIAKVLNLWGRAEGFLVFICVYLLGMIVLA-ScTGPSGYAAGYTL 166
                 67777788887777777788888888888777799999999999999********************************55555.3455446******* PP

       MFS_1  95 qGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv...lfllll..........peepperk 180
                   +g+ a++ +  +++ad +  ++r+ a+g++s+ f + a  +pl++  ++  +gWr+++ ++ iv++++f+   +++ ++                  
  KKY17973.1 167 YWIGYYAIYFILDVFVADTSGLRNRAWAFGFVSTPFICTAFTAPLAATSFINTAGWRWAYGAFVIVMFVVFMplvVVFKFYqlkaqkmglyI------- 258
                 **********************************************************************9885344444445544444443....... PP

       MFS_1 181 rkspkeee.....................................................kgtgpaplvp........awkallkdpvl..w...... 210
                     k+ +                                                                       +w+ ++++ ++  w      
  KKY17973.1 259 ---RKPSGrttvqsimhyihefdiigafilmaafvlfllpftlaswgkaeyqsakfiamvvI--------GillfpafaVWERFFARAHFikWelfkqr 346
                 ...4444455556666669************************8877777776666666663........04444444466666666666564555564 PP

       MFS_1 211 .....illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgr..rrrlllallllllaalglallavtssavl 302
                      ++l+a l+f   f++  ++  +++  v++l+   ++g+++ ++ +++++ ++++g +++ + +     l+++l+l++l+a +++ +   ++ + 
  KKY17973.1 347 tvlgaCCLAATLYF--SFYAWDVYYYSFVLVVYNLN-TSMGGYMSQIYNVGSCFWSVVFGIWVRQTRHfkYACLFFGLPLMMLGAGLMIHFRSNDHGIG 442
                 32224444444444..66666666666669******.799999999999999999********8755444889999999999999999999999***** PP

       MFS_1 303 lllvlvl.iGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 +l+++ + i f +g+ ++    +++  a ++   ++++l ++ +s+gg++g
  KKY17973.1 443 YLVMCQIfIAFSGGTLVIGEDMAVMAAADRDGVPMMLALLGLSSSIGGSIG 493
                 ***8888688899999************999999***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       980  (0.05466); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.53
# Mc/sec: 3359.74
//
Query:       KKY17974.1  [L=507]
Description: putative allantoate permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-30  105.3  22.0      3e-30  105.3  22.0    1.5  1  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.43   10.4   1.8        1.4    8.8   0.0    2.9  3  LapA_dom  Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.3  22.0   3.4e-34     3e-30       2     342 ..      59     416 ..      58     428 .. 0.79

  Alignments for each domain:
  == domain 1  score: 105.3 bits;  conditional E-value: 3.4e-34
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 +l+++l++l+r++++ a    l+++l+++  ++++ l ++++g++ ++lp  +l+ ++ +  ++ +   ++++ +l  +f+ +++ l+v+r++ Gl +g
  KKY17974.1  59 VLLFLLNILDRNNIANAKIVGLTDTLNLTNNQYNTCLMIFYVGYVMTQLPSNVLIAKVRPSIYIGCVTSAWGVVSLSQAFTKNFTGLVVSRFILGLVEG 157
                 6889999*****99999988*************************************9444455566666666644444867777************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.......Wravfyilaivsllafvlfllll..peepperkrkspkeee.. 188
                  ++p++  l++ w++++e +  i++l++++ l++++g l+++ ++s+         W+++f+i + ++++ ++l++ +l  + ++++r++ +p  ++  
  KKY17974.1 158 PFLPGVFLLMSCWYKQSELPPRIAFLYGANMLASAFGGLIAAGITSQMEgvagrasWEWLFIIEGSITVVIALLVIPFLpdYPTKTKRWWLRPDHQLlv 256
                 ******************************************99988888999********************99999944444455566666666588 PP

       MFS_1 189 ...kgtgpaplvp........awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrr 276
                     + ++a++v+        + k+ l dp l+ ++i+l +  +  +++  ++p++ + +lg++   +++ll a ++++++  +l +++ + r  ++ r
  KKY17974.1 257 ewrLRNENAGIVDedpesliwGVKQALVDPKLY-MFIVLQMSLLTAQSFNNFFPSI-VGTLGYN-STITLLLTAPPYFFAFLCSLAISFHAAR--KKER 350
                 888666666666688888888899999999996.55555555557788*******7.*******.5677767777777776666677777744..4556 PP

       MFS_1 277 lllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfn 342
                  + + + l++a+lg +++ +t   +  +++++l++ g+   +++  +++s+ +p+ +a +a++l+ 
  KKY17974.1 351 GFHIAIPLSFALLGNLMAMFTPALSSRYFSMFLMTAGSYSPYCLCVSWLSSTMPRPRAKRAASLAI 416
                 66666666666666666666655577777889999988888************8877777777654 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       1.6   1.4e+04      53      62 ..      36      45 ..      29      45 .. 0.68
   2 ?   -2.8   0.2      0.65   5.8e+03      23      38 ..     188     203 ..     187     211 .. 0.78
   3 ?    8.8   0.0   0.00015       1.4      34      61 ..     451     478 ..     443     480 .. 0.86

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1.6
    LapA_dom 53 kkkikkleke 62
                + +++klek+
  KKY17974.1 36 NDELRKLEKD 45
                6788888885 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.65
    LapA_dom  23 llvafgiGallgwlls 38 
                 +l++++ G+++++++s
  KKY17974.1 188 MLASAFGGLIAAGITS 203
                 5778888889988877 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00015
    LapA_dom  34 gwllslwsylrlrrelrrlkkkikklek 61 
                 ++l+++ + +  ++ l+r +++i++ e+
  KKY17974.1 451 ACLVCAGMAMGIKWHLKRENQQIEQMEN 478
                 6788888889***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 3029.74
//
Query:       KKY17975.1  [L=548]
Description: hypothetical protein UCRPC4_g05178 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-05   24.9   0.0    4.8e-05   23.2   0.0    2.0  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.7e-09   4.8e-05       1      47 [.      63     136 ..      63     137 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.7e-09
  F-box-like   1 isrLPdEiLlqIF.............................syLpps.dLlrlalVCrrWrrvaldtplLWrrlvl 47 
                 i++LP+EiL +I+                             ++ p +  L+ +alV+r Wr+ +    +++r++ l
  KKY17975.1  63 ILDLPPEILGTILdhllghmapvsaihssttpqlskgiasvmRH-PRRkALSDIALVSRAWRQPV--QERIYRHIKL 136
                 679**********9999999999888888888887777755433.44446888***********9..459****977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 3334.79
//
Query:       KKY17976.1  [L=500]
Description: hypothetical protein UCRPC4_g05179 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-78  261.2   6.8    5.7e-78  261.2   6.8    3.8  4  DnaJ-X    X-domain of DnaJ-containing
    1.5e-24   85.9   0.4    5.8e-24   84.0   0.4    2.1  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ-X  X-domain of DnaJ-containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   5.3      0.29   2.6e+03     102     139 ..     122     160 ..      61     176 .. 0.66
   2 ?   -3.1   3.0      0.48   4.3e+03     107     134 ..     228     254 ..     190     261 .. 0.51
   3 !  261.2   6.8   6.3e-82   5.7e-78       1     211 []     263     467 ..     263     467 .. 0.99
   4 ?   -3.3   4.6      0.54   4.8e+03     111     127 ..     471     490 ..     464     500 .] 0.32

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.29
      DnaJ-X 102 daqstmee.lakeqekkkeeekeeeeeteeelaemekkl 139
                 d+  tm   +++++e++  ++ e++ +  ee++++  ++
  KKY17976.1 122 DLTHTMDItMEQMEEEELAQSAEDKLHIHEEKEKEATQA 160
                 444444444444555443333444444444444443333 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.48
      DnaJ-X 107 meelakeqekkkeeekeeeeeteeelae 134
                   e +ke  kk++++   ++e+ e+l+ 
  KKY17976.1 228 TAE-EKELRKKEKKKGGLTKEQREKLDA 254
                 222.222222222233334444444444 PP

  == domain 3  score: 261.2 bits;  conditional E-value: 6.3e-82
      DnaJ-X   1 qeereeeLakkLrekLspyveadkke.etesFkkkleeeaesLkmesFGleilhtIGkiYknkAksflkskqkflglgglfssvkekgrvvkdtfktvs 98 
                 +eer+++LakkL +++s ++e+dk + +t++F++k + e+e+Lk esFGleilh++G +Y +kA+sflks qkflg++g+fs++k+kg+ +k+t++t+s
  KKY17976.1 263 REERVDTLAKKLLDRISVWTETDKGKdVTKAFEEKTRLEVENLKIESFGLEILHAVGTTYIQKATSFLKS-QKFLGISGFFSRLKDKGTLAKETWNTIS 360
                 689********************9777*******************************************.**************************** PP

      DnaJ-X  99 saldaqstmeelakeqekkkeeekeeeeeteeelaemekkllgkvLaaawkgskfeIestlrevcdkvLkDksvdketrlkRAeaLkilGeifqkakrt 197
                 +a+daq tmee+ak++ek+       e++t+e++ae+e+k++gk+Laaaw+gskfeI+s+lr+vcdk+L+Dk+v++e+r++RA+aL i+G ifqka+r+
  KKY17976.1 361 TAIDAQLTMEEMAKAEEKG------GEDWTDEKKAEYERKVTGKILAAAWRGSKFEIQSVLRDVCDKLLNDKTVKLEKRVERAHALVIVGGIFQKAERD 453
                 *******************......************************************************************************** PP

      DnaJ-X 198 ekeeeearvfeelv 211
                 ++ee +  +fe+l+
  KKY17976.1 454 PDEEGDYMAFEQLM 467
                 ****99999**997 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 0.54
      DnaJ-X 111 akeqekk...keeekeeeee 127
                 ak++ k+   ke++ke++++
  KKY17976.1 471 AKKKDKEdkkKEKNKEKDKH 490
                 22222221111222222222 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.4   6.5e-28   5.8e-24       2      63 .]      20      81 ..      19      81 .. 0.99

  Alignments for each domain:
  == domain 1  score: 84.0 bits;  conditional E-value: 6.5e-28
                HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                yY+ Lgv+++ase eIkkaYrkla+  HPDknp+d++a+ +F+ i eAy+vLs+++ R++YD
  KKY17976.1 20 YYDALGVPTTASELEIKKAYRKLAITTHPDKNPNDETAHARFQAIGEAYQVLSNKDLRAAYD 81
                9************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2351  (0.131128); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.36s 00:00:01.14 Elapsed: 00:00:00.57
# Mc/sec: 2628.28
//
Query:       KKY17977.1  [L=480]
Description: putative squalene synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-36  126.7   0.0    1.4e-36  126.4   0.0    1.1  1  SQS_PSY          Squalene/phytoene synthase
  ------ inclusion threshold ------
       0.13   12.7   0.0       0.51   10.7   0.0    2.0  2  Phage_int_SAM_5  Phage integrase SAM-like domain


Domain annotation for each model (and alignments):
>> SQS_PSY  Squalene/phytoene synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4   0.0   1.5e-40   1.4e-36       4     261 ..      52     328 ..      49     330 .. 0.87

  Alignments for each domain:
  == domain 1  score: 126.4 bits;  conditional E-value: 1.5e-40
                 H-HHHHHHHTTS-HHHHHHHHHHHHHHHHHT-.-----.........------------.....---------THHHHHHHHHHHT........--HHH CS
     SQS_PSY   4 asksfylaslllppelRdalgalYafcreaddlvDdvseplqara.rldwwrdavdavya...edklkpprepvlralaqlirtyk........lpkel 90 
                  s+sf  +++ l+pel  +++++Y++ r +d+++Dd+s pl+ ++  l+++ +++d+  +    ++ +++++ +l++++  +++yk        + k++
  KKY17977.1  52 TSRSFSTVIQELHPELLMPIALFYLVLRGLDTVEDDPSIPLEIKEpLLREFDQHLDEDGWcftGNRPEEKDRELLIQFKYIVEEYKkikpeyreVVKDI 150
                 69************************************88888887**********9998887345677788888888888888888888888****** PP

                 HHHHHHHTS--SS-.......--SHHHHHHHHHHHHHHHHHHHHHHH-S....S-H.HHHHHHHHHHHHHHHHHHHHT---SHHHHTT..S-HHHHHHH CS
     SQS_PSY  91 lleliegmeadlef...tr..yetlddLeeYcyrvagvVgelclrllgar...rsd.ralaeaarrlGkalQltnilRdvpeDaergrvyLPadvlkef 180
                 ++++ +gm+  +     ++  + + +d++ Yc++vag Vge ++r++  +   +++  + a + +++G++lQ tni+Rd++eD + +r ++P++++ ++
  KKY17977.1 151 CRKMGNGMADYVKDaefNEvgVNSVKDYDLYCHYVAGLVGEGLTRMFVISgfgNPRlLDRAALHNSMGLFLQKTNIIRDIREDFDDSRRFWPKEIWSQH 249
                 ********766665222446577************************9986642222223445589********************************* PP

                 T--HHHHHHT-.-SHH.HHHHHHHHHHHHHHHHHHHHHTGGGS.-HHHHHHHHHHHHHHHHHHHHHHHTTT-TTT------H CS
     SQS_PSY 181 gvseedllrkgvrsae.lrallrrlaerArelldearellkqlpdrrarpalllavalyrailerieaadydvlsrrvklsl 261
                  ++ edl++ +  ++e + ++  +++ +A e+ de+  +l+ l+++ +  +++++  ++ a+++   ++ +  ++r +k+++
  KKY17977.1 250 VDKFEDLFKPE--NKElALNCSSHMILNALEHADECLFYLAGLKEQSVFNFCAIPQTMAIATMDLCFRNYAM-FQRNIKITK 328
                 ********888..888899********************************************988877764.667777776 PP

>> Phage_int_SAM_5  Phage integrase SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.98   8.8e+03      45      61 ..      93     108 ..      91     115 .. 0.81
   2 ?   10.7   0.0   5.7e-05      0.51       3      68 ..     126     192 ..     124     199 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.98
                      T--HHHHHHHHHHHHHT CS
  Phage_int_SAM_5  45 eidkefleeFedYLkkk 61 
                      ei + +l+eF+++L ++
       KKY17977.1  93 EIKEPLLREFDQHL-DE 108
                      68888999999999.44 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 5.7e-05
                      HHHHHHHTHHHHTTS-HHHHHHHHHHHHHTTTS-....S---TTT--HHHHHHHHHHHHHTS---HHH CS
  Phage_int_SAM_5   3 ldyfkeyiekkkkkgskgtlrnykstlkhlkkFlkk..kditfeeidkefleeFedYLkkkkglsent 68 
                      l  fk+++e++kk + + + +++k  ++++ + + +  kd +f+e+ ++ +++++ Y++   gl  ++
       KKY17977.1 126 LIQFKYIVEEYKKIK-PEYREVVKDICRKMGNGMADyvKDAEFNEVGVNSVKDYDLYCHYVAGLVGEG 192
                      567899999999776.88888888888887766633349******************96666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3144.47
//
Query:       KKY17978.1  [L=573]
Description: putative dna damage response protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-28   96.9   0.0    2.3e-27   95.7   0.0    1.7  1  NIBRIN_BRCT_II  Second BRCT domain on Nijmegen syndrome break
     0.0056   16.5   0.2      0.015   15.1   0.0    1.8  2  RTT107_BRCT_5   Regulator of Ty1 transposition protein 107 BR
  ------ inclusion threshold ------
      0.026   14.9   0.7        0.1   13.0   0.0    2.2  2  BRCT            BRCA1 C Terminus (BRCT) domain


Domain annotation for each model (and alignments):
>> NIBRIN_BRCT_II  Second BRCT domain on Nijmegen syndrome breakage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   0.0   3.8e-31   2.3e-27       2     119 .]     192     315 ..     191     315 .. 0.94

  Alignments for each domain:
  == domain 1  score: 95.7 bits;  conditional E-value: 3.8e-31
  NIBRIN_BRCT_II   2 eRkelFegktFvfldkkqyeklspvitnGgGkall...eeeettaedlvryvkkvage...edgselleskgvvvvrvrpkkssteewiaevene 90 
                     eR+++Fe  tFvf++k+q+e+l pv+tnG+Gkal    e ++tta++l +y++++ag+     ++++ +++gv++vr+  k +++++w++++ + 
      KKY17978.1 192 ERRTMFEEFTFVFCSKEQFENLLPVVTNGHGKALQyplEIGRTTADELEQYMHNAAGRkglGGTATQSVRGGVILVRPVLK-GDMQKWADDLADA 285
                     8*********************************9998999*****************999555566789*********99.5************ PP

  NIBRIN_BRCT_II  91 lakk.gqrvIeesEildAilacsasklcnP 119
                     ++ + +qr+I++ ++l+ il+ +   l++P
      KKY17978.1 286 VSVRvNQRPIDQGDFLKIILNQDRYLLRRP 315
                     ************************999998 PP

>> RTT107_BRCT_5  Regulator of Ty1 transposition protein 107 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.6e-06     0.015      33      88 ..      81     137 ..      60     151 .. 0.79
   2 ?   -3.0   0.0       1.2     7e+03      31      46 ..     502     517 ..     471     522 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.6e-06
                    HHHHHHHHHTTEEE-S..GCCT-SEEE-SS---SHHHHHHCCCTTEEE-CHHHHHHHH CS
  RTT107_BRCT_5  33 dsdkkkLrklGikivq..eakkcntliApkilRTeKFLksLskapkilspdfiedvLk 88 
                    +++++ L++l+ik +      ++++++++k   T+K L++L  +++i++ ++i++++ 
     KKY17978.1  81 AAKRERLEHLDIKTIIeyVVGETTHVVTNKR-NTAKGLQALINGKHIVNNSYIDALVY 137
                    678999******9777344556888888775.7*********************9987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.2
                    SSHHHHHHHHHTTEEE CS
  RTT107_BRCT_5  31 kedsdkkkLrklGiki 46 
                      ++d++ L + G+ +
     KKY17978.1 502 AIRQDREALAHAGVDV 517
                    5567888888888776 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.7e-05       0.1      39      78 ..      98     135 ..      67     136 .. 0.89
   2 ?   -0.6   0.2       0.3   1.8e+03       4      21 ..     195     211 ..     192     213 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.7e-05
                 SCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEETHHHHHH CS
        BRCT  39 evskktthlvvgepesrslkylealklnipivheewlldc 78 
                 +v  +tth+v+ +    + k l+al ++++iv+ +++ ++
  KKY17978.1  98 YVVGETTHVVTNKR--NTAKGLQALINGKHIVNNSYIDAL 135
                 66789******999..9*******************9876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.3
                 TTTTTEEEEEEESTSSHH CS
        BRCT   4 llfhgckfvitgvldnft 21 
                 + f+ ++fv+ +++++f+
  KKY17978.1 195 TMFEEFTFVF-CSKEQFE 211
                 6799******.7777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3922.37
//
Query:       KKY17979.1  [L=140]
Description: putative rpel repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-23   79.3  27.4    3.6e-10   39.2   1.6    4.0  4  RPEL        RPEL repeat
    0.00039   20.9   1.2      0.011   16.3   0.3    2.1  2  Rotamase_3  PPIC-type PPIASE domain
  ------ inclusion threshold ------
       0.41   10.9   7.1       0.57   10.4   7.1    1.2  1  DUF2992     Protein of unknown function (DUF2992)


Domain annotation for each model (and alignments):
>> RPEL  RPEL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   1.8   1.3e-12     8e-09       1      24 []      32      55 ..      32      55 .. 0.96
   2 ?   -3.1   0.4       1.3   7.5e+03      13      18 ..      66      71 ..      65      71 .. 0.74
   3 !   21.6   2.9   2.1e-08   0.00013       1      18 [.      76      93 ..      76      94 .. 0.97
   4 !   39.2   1.6     6e-14   3.6e-10       1      24 []     111     134 ..     111     134 .. 0.97

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 1.3e-12
        RPEL  1 sLerKLshRPtreELvernILped 24
                sLe++L+ RP++++L++r+IL ++
  KKY17979.1 32 SLEKHLQTRPEPQDLKDRHILLDT 55
                8********************986 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.3
        RPEL 13 eELver 18
                +EL+++
  KKY17979.1 66 QELERQ 71
                799875 PP

  == domain 3  score: 21.6 bits;  conditional E-value: 2.1e-08
        RPEL  1 sLerKLshRPtreELver 18
                sL++ L+ RP+r+ELver
  KKY17979.1 76 SLKKQLEKRPDRDELVER 93
                8****************9 PP

  == domain 4  score: 39.2 bits;  conditional E-value: 6e-14
        RPEL   1 sLerKLshRPtreELvernILped 24 
                 sLe+KL++RP +eELv+ +IL++d
  KKY17979.1 111 SLEHKLQNRPKPEELVKEGILEPD 134
                 8********************997 PP

>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.3   1.8e-06     0.011       3      58 ..      33      92 ..      31     102 .. 0.88
   2 !    4.3   0.1    0.0094        56      30      58 ..      99     127 ..      89     129 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.8e-06
  Rotamase_3  3 lsklvdkksakdsvkvshIlistkg....kesrseeeakakadsllaalkegadFaalAk 58
                l k ++++ +++ +k +hIl++t+     ++ ++e e+++  dsl ++l+++ d  +l++
  KKY17979.1 33 LEKHLQTRPEPQDLKDRHILLDTNAapalQAAQQELERQKATDSLKKQLEKRPDRDELVE 92
                77899999999***********988***9999******************9888777765 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0094
  Rotamase_3  30 srseeeakakadsllaalkegadFaalAk 58 
                  ++e e   +adsl ++l+++ + ++l+k
  KKY17979.1  99 YEKELEKHMRADSLEHKLQNRPKPEELVK 127
                 4566777899*********9988888877 PP

>> DUF2992  Protein of unknown function (DUF2992)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   7.1   9.6e-05      0.57      71     129 ..      48     106 ..      21     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 9.6e-05
     DUF2992  71 qReikkelkkkgvgtkAqqalklqleqrkkerkkkskekreaekerkfelkqeKrkekh 129
                  R+i   ++ +   + Aqq l++q  +   +++ +++  r++  er+   + eK+ ekh
  KKY17979.1  48 DRHILLDTNAAPALQAAQQELERQKATDSLKKQLEKRPDRDELVERQASHRYEKELEKH 106
                 577777788888899*******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1338  (0.0746277); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.50
# Mc/sec: 835.33
//
Query:       KKY17980.1  [L=237]
Description: putative translin-associated factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-64  215.5   0.2    8.5e-64  215.3   0.2    1.0  1  Translin  Translin family
  ------ inclusion threshold ------
      0.043   14.3   0.2       0.13   12.8   0.2    1.7  1  NPV_P10   Nucleopolyhedrovirus P10 protein
      0.079   13.3   0.0        1.9    8.9   0.0    2.4  2  CCDC-167  Coiled-coil domain-containing protein 167


Domain annotation for each model (and alignments):
>> Translin  Translin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.3   0.2   1.4e-67   8.5e-64       1     205 []      14     214 ..      14     214 .. 0.97

  Alignments for each domain:
  == domain 1  score: 215.3 bits;  conditional E-value: 1.4e-67
                 HHHHHHHHHHHHHHHHHHHHHHHHHTTGSSTTTHHHHHHH.HHHHHHHHHHHTTSS..........GHHHHGGGTH.HHHHHHHHHHHHHHHHHSS--- CS
    Translin   1 drreriikasrditaaskkiifllhrvrsekteaqdkkakikkeakeklkeiakllasvaeelqgsnayrYqrqisgglqeliealsfahYletqtLit 99 
                 drreriik+srd+ta+skkiif+l+rvr   + +++ +++i++++++k+++++kll+s++ +lqg+n+yrY rqis+glqe++e+++f hYl+tq+Lit
  KKY17980.1  14 DRRERIIKVSRDVTATSKKIIFALQRVR---QLQKPLPSSIESDIASKFDNVNKLLSSIRDDLQGINRYRYYRQISPGLQEWMESVAFRHYLQTQSLIT 109
                 9***************************...66799*************************************************************** PP

                 HHHHHHHTT.---SSSSSS---HHHHHHHHHHHHHHHHHHHHHHHCTT--S.....HHHHHHHHHHHHHHHHHTS----HH.....HHHHHTTHHHHHH CS
    Translin 100 leevqkilealkeneedafhltpedYllGlfdLtgELmRfainsvalgdke....ekplqilkflrelragfellnlknds..akdlrkKldvlkqsvk 192
                 ++e+ + l++       ++ + ++dYllG+fd+tgELmRfai+ +a+ ++      ++++il++++ lr+++e+l+       ++d++ K+++++ sv+
  KKY17980.1 110 FDEAMALLPE-------GIYILEDDYLLGVFDMTGELMRFAITIIATAGQVpvaeGSKSTILADMQRLRTMLEGLEIHSGLplNRDWEMKMKTMRISVE 201
                 ********94.......9******************************9889999999*******************95449999************** PP

                 HHHHHHHHHHHHT CS
    Translin 193 KvEdvvYdlsvRg 205
                 KvE+ vY++ vRg
  KKY17980.1 202 KVENSVYEVIVRG 214
                 ************8 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   2.1e-05      0.13       9      62 ..      22      77 ..      19      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.1e-05
     NPV_P10  9 IradikavddkVdalqqqvddvqenlpdv..telnekLdaqsaqLaeletkvenIq 62
                +  d++a+++k+    q+v ++q+ lp    +++ +k+d+ ++ L ++ + ++ I+
  KKY17980.1 22 VSRDVTATSKKIIFALQRVRQLQKPLPSSieSDIASKFDNVNKLLSSIRDDLQGIN 77
                5689********998999*********8523579****************999996 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00031       1.9       2      40 ..      55      93 ..      54     108 .. 0.88
   2 ?    1.7   0.0     0.054   3.2e+02       9      36 ..     189     216 ..     187     220 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00031
    CCDC-167  2 vaseIdkleeklascrerLeaverrlrkeelseeeResl 40
                +as+ d++++ l+s+r++L+ ++r  + +++s+   e +
  KKY17980.1 55 IASKFDNVNKLLSSIRDDLQGINRYRYYRQISPGLQEWM 93
                78999***************************9765555 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.054
    CCDC-167   9 leeklascrerLeaverrlrkeelseee 36 
                  e k++ +r ++e+ve++++++ +  +e
  KKY17980.1 189 WEMKMKTMRISVEKVENSVYEVIVRGKE 216
                 68899999*********99987666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1560.06
//
Query:       KKY17981.1  [L=480]
Description: putative gpi mannosyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-77  260.0  15.3    3.1e-77  260.0  15.3    1.8  2  Mannosyl_trans  Mannosyltransferase (PIG-M)
    3.2e-08   33.0  23.8    7.8e-08   31.8  23.6    1.7  1  PIG-U           GPI transamidase subunit PIG-U
  ------ inclusion threshold ------
      0.047   13.9   1.2        5.9    7.2   0.0    3.4  3  Chordopox_A13L  Chordopoxvirus A13L protein


Domain annotation for each model (and alignments):
>> Mannosyl_trans  Mannosyltransferase (PIG-M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.33     2e+03      22      50 ..      15      43 ..       4      59 .. 0.83
   2 !  260.0  15.3   5.1e-81   3.1e-77       1     258 [.     147     411 ..     147     412 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.33
  Mannosyl_trans 22 lekrkiasaalvlGlavhlkiYPliyala 50
                    ++k+ ++sa+ ++  a+ l++  l+y l 
      KKY17981.1 15 ITKSLLTSASSLFAAAISLRVVLLVYGLY 43
                    77899999999999999999999999875 PP

  == domain 2  score: 260.0 bits;  conditional E-value: 5.1e-81
  Mannosyl_trans   1 istrGnadsivailvlltlyllekrkiasaalvlGlavhlkiYPliyalalalslskkkeq....svaakllrllkiavlvlvlvalisllaltl 91 
                     istrG+++ +++++v++ l+  +  ++  a+++lG+ vh+kiYP+iy  +++  ls++ +     s+ +k l+ l+ + ++lv +al++++ l+l
      KKY17981.1 147 ISTRGSSEGLLCVIVVALLWAASEGNVPLAGMLLGFGVHFKIYPFIYGPSILWTLSSEGSMglkaSFIEKSLHFLNPRRVLLVFSALFTFTFLNL 241
                     8******************************************************9998874555777777799********************* PP

  Mannosyl_trans  92 llyklYGqefleeaylYhlvrkDhrhnfslyflllYleeaskvaassilkllaflPqlvllllv.slkf.rrnlafalfvqtfvfvtfnkvctsq 184
                     ++y lYG +f+ ++yl+hlvr Dhrhnfs+y+ llYl++a  +  +s+ + laflPql+l +++ +l + ++nla ++++qt++fvtfnkvctsq
      KKY17981.1 242 VMYFLYGDSFILHTYLHHLVRIDHRHNFSPYNTLLYLSSAGYTS-QSSFESLAFLPQLLLSVVAiPLILaKKNLAACMLAQTIAFVTFNKVCTSQ 335
                     *****************************************977.6669********99955443888889************************ PP

  Mannosyl_trans 185 YfvWylvlLplllskvkllsw.kkalvllllWlatqalWllaayllefegkntfll.lflasllfllanvviLkql 258
                     Yf+Wyl++Lpl+l++++l+   + +++ lllW+a+qalWl ++y+lef g + f++ l+lasl f+ +nv+iL  +
      KKY17981.1 336 YFLWYLIFLPLYLPNSRLIREpRVGFTALLLWIASQALWLQQGYKLEFLGDSAFVPgLWLASLSFFGINVWILGVI 411
                     ******************8652669*******************************9****************877 PP

>> PIG-U  GPI transamidase subunit PIG-U
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8  23.6   1.3e-11   7.8e-08      37     365 ..      60     375 ..      28     379 .. 0.71

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1.3e-11
       PIG-U  37 lqEgvallksgispYsggvvhqpPLllallslllssintkslqvlasllflliDllialllykiknkslaksekkreksktkkslsplliaavYlfNPl 135
                 + +++++l +g spY   +++  PLl  +l  +      +   +  ++lf++ D+++++l++ +    +++  ++         ++ l+ + ++l+NP+
  KKY17981.1  60 FTDAARYLSRGQSPYMRATYRYTPLLAWMLLPT---TWGNAWFHSGKALFAISDIVAGYLILYM---LRKRGFQE---------RQALVYSSIWLLNPM 143
                 478889999999**************9999888...344555566789*************999...23333222.........5689*********** PP

       PIG-U 136 tilscvslStsvlsnlllllslylalkgkallsalslalatylslypllllapllllllkllkaskskkpsksnklskllr.....llllfllyllvLl 229
                 +   +  +S++ l  ++++++l++a++g++ l+ ++l++ +++++yp++  + +l  l+++ +    ++  +++ +    +     l++ +l+++  L 
  KKY17981.1 144 VATISTRGSSEGLLCVIVVALLWAASEGNVPLAGMLLGFGVHFKIYPFIYGPSILWTLSSEGSMGLKASFIEKSLHFL--NprrvlLVFSALFTFTFLN 240
                 *9999999999999999888888888*****************************99888444444333333333322..2234323333444555566 PP

       PIG-U 230 laSfllggswsflratygniltv....sdltPnlGlfWYfFtemFdrFrsfFlfvFqllpflyvlPLtirLrkqpllllvlllalilifkpyptvgdla 324
                 l+ ++l g  sf+  ty ++l      ++ +P+  l  Y+ +  + +  sf    F   ++l v+ + + L k+ l++++l + +++++ +  + +++ 
  KKY17981.1 241 LVMYFLYG-DSFILHTYLHHLVRidhrHNFSPYNTLL-YLSSAGYTSQSSFESLAFLPQLLLSVVAIPLILAKKNLAACMLAQTIAFVTFNKVCTSQYF 337
                 66666555.6899999999988856666666877766.8888888776666556665555555555555689999999999999999888888887765 PP

       PIG-U 325 l.llsLlplfkellkrmkysfiillillvtllLspvfyhlWi 365
                 l +l++lpl+    +  + +     + + +llL  + + lW+
  KKY17981.1 338 LwYLIFLPLYLPNSRLIREP----RVGFTALLLWIASQALWL 375
                 4399****994443333333....444445555555555555 PP

>> Chordopox_A13L  Chordopoxvirus A13L protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.023   1.4e+02      15      25 ..      35      45 ..      26      80 .. 0.87
   2 ?   -1.0   1.1      0.37   2.2e+03      10      18 ..     157     165 ..     156     167 .. 0.85
   3 ?    7.2   0.0   0.00099       5.9       3      44 ..     396     437 ..     394     442 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.023
  Chordopox_A13L 15 vglivYgiYnr 25
                    v+l+vYg+Y+ 
      KKY17981.1 35 VVLLVYGLYQD 45
                    89*******85 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.37
  Chordopox_A13L  10 iCvaivgli 18 
                     +Cv++v+l+
      KKY17981.1 157 LCVIVVALL 165
                     7*****996 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.00099
  Chordopox_A13L   3 adlllliiCvaivglivYgiYnrkketqttnpstveeyeeed 44 
                     a l ++ i v i g+iv  + n  ++  +t++st+e++++++
      KKY17981.1 396 ASLSFFGINVWILGVIVQDVRNSSSDDEVTKQSTQEPLKSKE 437
                     678899****************************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       811  (0.045234); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.34s 00:00:00.95 Elapsed: 00:00:00.51
# Mc/sec: 2847.34
//
Query:       KKY17982.1  [L=418]
Description: hypothetical protein UCRPC4_g05185 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00074   19.8   0.1      0.011   16.0   0.1    2.3  1  PIN_4     PIN domain


Domain annotation for each model (and alignments):
>> PIN_4  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   6.3e-07     0.011       4      75 ..      12      87 ..       9     251 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.3e-07
       PIN_4  4 DTnvlLhdpealksf..keehdvviPitVleELdklKkgsserelarlarqanrlldelleke....sgrlkvqtsae 75
                D   l  +++ +k+   ++ + +viP+ +l+ L  lK++ss  +++ +ar+a+++ld +++ +    + +++vq  +e
  KKY17982.1 12 DDTALVANISEIKKWvaQGALTLVIPVYTLDRLHLLKRDSS--QIGINAREATKFLDRVTSGKdnlpEDSVHVQGPTE 87
                5556666666666667788999******************9..**************997666556655556665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 2699.73
//
Query:       KKY17983.1  [L=653]
Description: putative dna-directed polymerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-42  143.4   0.1    9.1e-42  142.6   0.1    1.4  1  IMS       impB/mucB/samB family
    3.4e-16   60.0   0.1    7.7e-16   58.9   0.1    1.5  1  IMS_C     impB/mucB/samB family C-terminal domain
    0.00082   19.6   0.0     0.0022   18.2   0.0    1.8  1  IMS_HHH   IMS family HHH motif
  ------ inclusion threshold ------
        0.8    9.5   2.5          1    9.2   1.0    1.9  2  zf-MIZ    MIZ/SP-RING zinc finger


Domain annotation for each model (and alignments):
>> IMS  impB/mucB/samB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.6   0.1     2e-45   9.1e-42       1     150 []     133     276 ..     133     276 .. 0.98

  Alignments for each domain:
  == domain 1  score: 142.6 bits;  conditional E-value: 2e-45
                 EEETTHHHHHHHHHT.T-TTS-EEEEET....TEEEEE-HHHHTTT--TTSBHHHHHTTHTT-EEEEEE-HHHHHHHHHHHHHHHHH-S..EEEEETTE CS
         IMS   1 iDmdaFyasverardpeLkgkPvvvaqgsekrgiviavsyeArayGvkrgmrikeakklcpdlivvkvdlekyrraskkileilkrfispkvekasiDE 99 
                 iD+daFya+ve++++peL++ P++v++g     ++++++y Ar++G ++gm+ + a+klcp+li+++ +++ky    k++ +il+++ +p+ e+asiDE
  KKY17983.1 133 IDCDAFYAAVEELDRPELRDVPFAVGKG-----VLTTCNYHARKFGCRSGMAGFVALKLCPQLICLPMNFDKYTAKAKEVRAILSQY-DPRFESASIDE 225
                 8*************************97.....******************************************************.99********* PP

                 EEEE-HHHHHHHH-SHHHHHHHHHHHHHHHH---EEEEEESSHHHHHHHHH CS
         IMS 100 ayldltgleelaesegaalakelrkaikeelgltvsiGiasnkllAKlase 150
                 ayl++t++ + ++ e ++ +++lr ++ e++++t+s+Gia+n  +AK+ s+
  KKY17983.1 226 AYLNITEYCKMHDMEPEDAVAQLRGEMQEKCKITISAGIAPNAKIAKISSN 276
                 *******999999999********************************985 PP

>> IMS_C  impB/mucB/samB family C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.1   1.7e-19   7.7e-16       7     111 ..     365     471 ..     361     476 .. 0.90

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 1.7e-19
       IMS_C   7 epksissektfpepydesklkkelreLaeelarrLrdkglvartitlklrysdfh.asrsatLprptsdtreileaalkLlrrlide.pglpirligvs 103
                  +ks+++e tf    ++ +l++ lr+ +eel  +Lr+ g+ +rt++lk++ + ++  +r+++ p +  ++++i++ al +l +l++e p++++rl+g++
  KKY17983.1 365 DRKSVGTESTFHDMSNKTELREKLRHTSEELEGDLRRTGFKGRTLVLKIKLHTYEvYTRQVAPPKAVATADDIYKYALPMLAKLEKEiPNMKLRLMGLR 463
                 79**********63334349*****************************9776668******************************************* PP

       IMS_C 104 asnlveka 111
                 +++lv+ +
  KKY17983.1 464 CTHLVSTE 471
                 *****443 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   4.9e-07    0.0022       2      32 .]     291     321 ..     290     321 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 4.9e-07
     IMS_HHH   2 ddvkefLwplpitkipGiGgklgekLeklGi 32 
                 ++v++f+++lp +k+ G+G++ + +L++ G+
  KKY17983.1 291 AAVMAFMENLPTRKVNGVGRVFERELDAVGV 321
                 689***********************99886 PP

>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.3   5.8e+03      13      24 ..     456     467 ..     454     468 .. 0.74
   2 ?    9.2   1.0   0.00022         1      38      49 ..     562     573 ..     558     574 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.3
                 SSEEEETT--SS CS
      zf-MIZ  13 kiPvrgekCkHl 24 
                 k+   g +C+Hl
  KKY17983.1 456 KLRLMGLRCTHL 467
                 55666899***7 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00022
                 HS---B-TTT-- CS
      zf-MIZ  38 rtetWnCPvCsk 49 
                 ++e+W+CP+C k
  KKY17983.1 562 QNEAWKCPICGK 573
                 7899******76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      624  (0.0348039); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.51
# Mc/sec: 3852.50
//
Query:       KKY17984.1  [L=275]
Description: hypothetical protein UCRPC4_g05187 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.1   0.0        0.2   11.3   0.0    1.3  1  TPMT      Thiopurine S-methyltransferase (TPMT)


Domain annotation for each model (and alignments):
>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.1e-05       0.2      48     103 ..      41      99 ..      40     106 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.1e-05
                 T-HHHHHH-BTTEEEEEE-S-HHHHHHHHHHHTT..SGGGGGEEEE--........... CS
        TPMT  48 kaldlvwlAeqgrevvGvelselAvekffeeanl..epkvkelsgvke.ysageiellc 103
                 ka +l++ A ++r+v+ +e+s++ + + +++ +   + ++ el+ +++ ++ag+++l++
  KKY17984.1  41 KANELAANARRERKVLDLEISNSSLLAINRTLERemRKQSAELRRFRRlSRAGRLSLVA 99 
                 789999****************9877766644433367788888888879999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.51
# Mc/sec: 1614.82
//
Query:       KKY17985.1  [L=234]
Description: putative thiosulfate sulfurtransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-15   56.5   0.0    5.8e-11   42.9   0.0    2.2  2  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   1.5e-05      0.28      53      98 ..       6      55 ..       1      62 [. 0.79
   2 !   42.9   0.0   3.2e-15   5.8e-11      12     105 ..     109     217 ..     101     219 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.5e-05
   Rhodanese 53 elpeellel.gidnkktvvvycdgggr.aaaa...aallkklGyknvsvld 98
                e ++e++++ gi++++ +vvy+ +  +   +a   a++l+  G+++v++l+
  KKY17985.1  6 EGFAEAMKElGIRKDDDLVVYDTEELGiF-SAprvAWTLRVFGHPKVHLLN 55
                5566666667*************999943.44477889999**988*9998 PP

  == domain 2  score: 42.9 bits;  conditional E-value: 3.2e-15
   Rhodanese  12 gkvallDvRppeeY...........ekghIpgAvnv.skdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGy..kn.vs 95 
                 ++v++lD+R++ ++           ++gh pg++++   + l  ++k+  p  el + ++++g+d+kk++++ c +g  aa  +a+l  + +   +  +
  KKY17985.1 109 EEVQILDARSKGRWegtepeprpglSAGHMPGSISLpFQELLDPGTKTLLPPEELRKTFEAKGLDQKKPIITTCGTGVTAAIIEAALHHAAFgpADdRR 207
                 5677*****999988888888888899*********9999999999*********************************888888777655555666** PP

   Rhodanese  96 vldGGfkawk 105
                 v+dG++++w+
  KKY17985.1 208 VYDGSWTEWA 217
                 *********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1679.17
//
Query:       KKY17986.1  [L=276]
Description: putative cdk-activating kinase assembly factor mat1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-21   74.6   5.3    1.2e-20   74.2   5.3    1.1  1  MAT1        CDK-activating kinase assembly factor MAT1
    8.5e-14   51.2   0.4    1.3e-13   50.5   0.4    1.2  1  zf-C3HC4_5  Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> MAT1  CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   5.3   1.4e-24   1.2e-20      28     156 ..      38     166 ..      36     190 .. 0.93

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 1.4e-24
        MAT1  28 kifNkkeeDFesLkeYndYLeeveeivfnLtngidveeTekkleqYekenkelIlknkeklkqeeeeleeleelekeekeekrkeekqeeeeekekkek 126
                 +i N++e++Fe+ ++++d+Le+ eei+ nL+   +v eTek+l++Y ++n+++I++n++ +++e++ + +++ +e +  + +r+  k+++ +e++ +  
  KKY17986.1  38 RILNRREDEFETKRDWDDFLEQREEIITNLVSRTNVAETEKQLQEYAASNESSIKANSRLEREESDSFRRRQVEEDQLAKTRREASKRAQGDERQARLD 136
                 578************************************************************************************************ PP

        MAT1 127 akeelideLatsskdaeeiiekvkkkakkk 156
                 ++ +++d++a+ + d ++  +  kk++++ 
  KKY17986.1 137 ERAKILDQMAAGQYDPDRYKAAAKKQVTRP 166
                 **************9998888888877665 PP

>> zf-C3HC4_5  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.4   1.5e-17   1.3e-13       1      29 [.      11      39 ..      11      45 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 1.5e-17
  zf-C3HC4_5  1 deiCPvCkssrYlnpdleflinpeCYhkm 29
                +e+CPvCk+s Yln+ ++flinpeCYh++
  KKY17986.1 11 EEVCPVCKTSSYLNKGIRFLINPECYHRI 39
                69*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1365  (0.0761336); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 1851.68
//
Query:       KKY17987.1  [L=582]
Description: putative udp-galactose transporter like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-27   96.7  19.6    9.5e-26   90.5   0.4    5.1  5  DUF3835      Domain of unknown function (DUF3835)
    2.8e-24   85.0   3.0    3.3e-24   84.8   0.6    2.5  2  Prefoldin_3  Prefoldin subunit
  ------ inclusion threshold ------
          2    8.7   5.4       0.93    9.8   1.9    2.4  3  YlbD_coat    Putative coat protein


Domain annotation for each model (and alignments):
>> DUF3835  Domain of unknown function (DUF3835)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.29   1.8e+03      26      64 ..     108     149 ..      92     156 .. 0.69
   2 ?   -1.8   0.0      0.98   5.9e+03      26      47 ..     292     302 ..     273     323 .. 0.63
   3 !    5.0   1.8    0.0074        44      16      63 ..     333     382 ..     311     390 .. 0.77
   4 !   10.8   0.3   0.00011      0.67      56      78 .]     450     475 ..     416     475 .. 0.71
   5 !   90.5   0.4   1.6e-29   9.5e-26       1      78 []     503     581 ..     503     581 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.29
     DUF3835  26 llqrevaeeYhrlRnkliqrqggfvkseeeeeiepide....d 64 
                 ++q++ ae+  r Rn+l+  +   ++++  + +++i e    +
  KKY17987.1 108 IVQKQLAEA-ERRRNSLLLAEHDDTREDAGLPMVEITEelddE 149
                 555555443.678888888877777778888888888854333 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.98
     DUF3835  26 llqrevaeeYhrlRnkliqrqg 47 
                             lR+++i  q+
  KKY17987.1 292 T-----------LRKEMIDYQS 302
                 3...........4555555544 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0074
     DUF3835  16 ppdpdeldeellqrevaeeYhrlRnkliqrqggfvks..eeeeeiepide 63 
                  +d+del +e  ++e ++eY r +++ i ++ + + +  e +++++ i++
  KKY17987.1 333 MDDDDELFDETESEESEDEYGRSKKSPITDTYRQQMMslERKLNVKDIQN 382
                 46789999******************999855443323456665555555 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.00011
     DUF3835  56 eeiepidedgnp...kkvSRFKAaRl 78 
                     p  ++g+p    k+SRFK++R+
  KKY17987.1 450 APTDPKVNFGKPqenSKMSRFKQRRM 475
                 3344444577777779*********7 PP

  == domain 5  score: 90.5 bits;  conditional E-value: 1.6e-29
     DUF3835   1 ladevvErdikeaaappdpdeldeellqrevaeeYhrlRnkliqrqggfvks.eeeeeiepidedgnpkkvSRFKAaRl 78 
                 lad vvEr+i +aa++p+ d++d+ ++ +e+a+eY+ lRn++i+rqggfv++ e+e+e +p+ ed + kk+SRFKAaRl
  KKY17987.1 503 LADVVVERPIGSAAQAPSFDDIDDRMHAQEIASEYRALRNRMIHRQGGFVEErEQEQEKVPLPEDMGGKKMSRFKAARL 581
                 799*******8888889********************************99989999999******************7 PP

>> Prefoldin_3  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.6   5.6e-28   3.3e-24       2      97 ..      25     119 ..      24     121 .. 0.93
   2 ?   -2.1   0.1      0.68     4e+03      13      30 ..     321     338 ..     309     378 .. 0.68

  Alignments for each domain:
  == domain 1  score: 84.8 bits;  conditional E-value: 5.6e-28
  Prefoldin_3   2 kslyklreweaeydglkeeisalkeeddateedllriardfegslvtekEveeilGekq.gvtrskqQvvdlisrRiDYVkqniktlekrleaaenk 97 
                  k l+++++we ey+glkeei   ++  +++++dll  a+df+++lv+++E++ +lG ++ +  rs+qQ+ d+isrRi YV +n + ++k+l+ ae++
   KKY17987.1  25 KALRHWQTWEIEYEGLKEEILLRPA--TSSSKDLLDAAKDFKAELVDDDEINSLLGLNTgRPPRSQQQIADVISRRIEYVSRNSEIVQKQLAEAERR 119
                  7899****************99966..9****************************9773557********************************87 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.68
  Prefoldin_3  13 eydglkeeisalkeedda 30 
                  eyd+  +++++l ++dd 
   KKY17987.1 321 EYDSYADDLDDLMDDDDE 338
                  677777777777664432 PP

>> YlbD_coat  Putative coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.1   1.3e+04      83      99 ..      15      31 ..      10      42 .. 0.69
   2 ?   -3.0   0.0       1.4   8.5e+03      82      97 ..     298     313 ..     271     318 .. 0.56
   3 ?    9.8   1.9   0.00015      0.93      34      86 ..     333     382 ..     317     386 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.1
   YlbD_coat 83 klqehlnqlskalasvq 99
                +lq+++++l kal + q
  KKY17987.1 15 ELQDQVTKLRKALRHWQ 31
                46777777777766554 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.4
   YlbD_coat  82 dklqehlnqlskalas 97 
                  + q++ln++ +++a+
  KKY17987.1 298 IDYQSGLNEVGQIVAE 313
                 2344555555555544 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00015
   YlbD_coat  34 lGeddeiweeykekeeekkesksekkkkeekkkdllsqllnllkkldvdklqe 86 
                 + +dde ++e   +e+e++e++  ++kk+  ++   +q+++l +kl+v+++q+
  KKY17987.1 333 MDDDDELFDE---TESEESEDEYGRSKKSPITDTYRQQMMSLERKLNVKDIQN 382
                 4567888888...55666666677777899999999***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       857  (0.0477997); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3849.82
//
Query:       KKY17988.1  [L=330]
Description: hypothetical protein UCRPC4_g05191 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-27   94.7   0.3    6.3e-27   93.5   0.3    1.7  1  DUF1769   Protein of unknown function (DUF1769)
     0.0021   18.5   0.0     0.0034   17.8   0.0    1.3  1  ZapA      Cell division protein ZapA


Domain annotation for each model (and alignments):
>> DUF1769  Protein of unknown function (DUF1769)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.3   7.1e-31   6.3e-27       1      55 []     105     160 ..     105     160 .. 0.99

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 7.1e-31
     DUF1769   1 GddllfGndfdrpirdrlPpgfsaalkfak.fiDpglegDlyadkPylyspllssm 55 
                 Gddll+GndfdrpirdrlPpgf +a+k+ak ++Dpgle+D+ adkP++++p+lss+
  KKY17988.1 105 GDDLLWGNDFDRPIRDRLPPGFDYAFKLAKwWVDPGLEHDARADKPWIFGPALSSW 160
                 8******************************************************8 PP

>> ZapA  Cell division protein ZapA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.8e-07    0.0034      24      73 ..     255     306 ..     243     323 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.8e-07
        ZapA  24 eaaklvdekikeireaggnlseerll..vmaaLnladellklkkraeeleae 73 
                 +a k+vd+k  e+r   +n  + ++l  v+ aL + del ++++++++  a+
  KKY17988.1 255 NAIKYVDSKTHELRHTLKNKRTGEVLvvVLFALLFGDELKEAEDEEQAKNAD 306
                 799***************955555553377**********998887444432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 2082.42
//
Query:       KKY17989.1  [L=363]
Description: putative isocitrate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-99  331.4   0.0      1e-98  330.7   0.0    1.2  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.7   0.0  5.6e-103     1e-98       2     348 .]       8     359 ..       7     360 .. 0.93

  Alignments for each domain:
  == domain 1  score: 330.7 bits;  conditional E-value: 5.6e-103
                 EEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE---THHHHHHHSSSS-HHHHHHHHHS.SEEEEEE---CSSSSSSHHH.HHHHHHHHTTEEEEE CS
      Iso_dh   2 iallegdgiGpevveaalkvlkaakekaglelefeevdvGgaaidetgeplpeetleaikea.dvvllgavgtpkekevrpen.gLlaLrkeldlfanl 98 
                 i l++gdgiG ev++a  +vl+++ +  gl+++f + d+G   ++++g++lp++t+e ++++ d +l+gav +p  ++v  ++ +++aLrk+ldl+an+
  KKY17989.1   8 IGLIPGDGIGREVIPAGRRVLESLPSSLGLKFSFVDLDAGFDCFKAQGSALPAKTVETLQKEcDGALFGAVSSPS-TKVAGYTsPIVALRKKLDLYANV 105
                 889*******************************************************99887************.66666666*************** PP

                 EEEE-BCCTTCCSSBTHHHHCT-EEEEEEE-SSCGGCSSEEEEETTG.GGGEEEEEEEEEHHHHHHHHHHHHHHHHHT...........TTSEEEEEES CS
      Iso_dh  99 rpvkvfeklkvksplkrevveevdlvivReltggiYfgeekekkgsifteevavdtklyseeeieriaraafelAlkr...........gkkkvtlvdK 186
                 rp+k +++ + + p     ++ +dlvivRe+t+++Y++eek+++    +++ a  +k++s+++++ria++a e+Al+r           +++ vt+++K
  KKY17989.1 106 RPCKTVPTKAFPVPT----PHPIDLVIVRENTEDLYVKEEKTYDAPSGEGQIAEAIKRISTKASSRIAKIAGEIALRRqkmrasessaeKQAMVTITHK 200
                 ******655544444....467*********************9988999*************************988777777777666788****** PP

                 TTTTHHHH.HHHHHHHHHHCC.TTTTSEEEEEEHHHHHHHHHHSGGGGSEEEE-HHHHHHHHHHHHHHTTSGCC-EEEEEETSS-EEEEESS---CCCT CS
      Iso_dh 187 anvlksse.lwrkiveevaee.eypdielehqlvDsaamqlvkspkqfdVivtkNlfGDilSDeaaalvGslGllpSaslgekkvaifEavHGsapdia 283
                 +nvl++++ l+r ++ ev+++ +++ +++e+q+vDs++++l+ +p+ +dViv++Nl+GD+lSD aaalvGslGl+pSa++g ++++i E++HGsapdi 
  KKY17989.1 201 SNVLSQTDgLFRSTAREVLSNqQFSSVKIEEQIVDSMVYKLFLQPHYYDVIVAPNLYGDLLSDGAAALVGSLGLVPSANVG-SNIVIGEPCHGSAPDIE 298
                 ******************98769**********************************************************.67*************** PP

                 TSS-S-THHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHH.TSCCHHHCTTSTCCCHHHHHHHHH CS
      Iso_dh 284 gkdkaNpiavilSaalmLryslgleeaAdkiekAvekvlea.givTkDlageaakevstsefgdav 348
                 gk++aNpia+i S+  mL++ lg+eeaA+ki++Av+++l + + v  Dl+g+a    +t+e+++++
  KKY17989.1 299 GKGIANPIATIRSVGAMLEF-LGQEEAAKKIYDAVDANLIEgRFVSPDLGGTA----KTDEITNDI 359
                 ********************.***************99888689*********....888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.51
# Mc/sec: 2155.76
//
Query:       KKY17990.1  [L=415]
Description: putative restriction of telomere capping protein 5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 3048.16
//
Query:       KKY17991.1  [L=336]
Description: putative retinol dehydrogenase 12 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-24   85.7   1.6    1.8e-22   79.8   1.6    2.1  1  adh_short      short chain dehydrogenase
    8.7e-19   68.0   0.8      6e-17   62.0   0.8    2.1  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    0.00038   20.4   0.1    0.00083   19.3   0.1    1.5  1  KR             KR domain
  ------ inclusion threshold ------
      0.031   13.7   0.1        0.1   12.0   0.1    1.7  1  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
       0.17   12.4   0.0       0.43   11.1   0.0    1.6  1  MCCD1          Mitochondrial coiled-coil domain protein 1


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   1.6     5e-26   1.8e-22       1     189 [.      35     248 ..      35     253 .. 0.82

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 5e-26
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT.....TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee.....gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93 
                 kv++ tG ++GIG+ + ++l+k++++ v  ++ see   ++++ + e+     ++k+  +q+D++d+++v ++ +k++k + ++d+L nNAG     ++
  KKY17991.1  35 KVMVGTGLTEGIGYGVMYTLLKNNISKVHaISTSEEVKDAAINDIAENlgepaAQKVQWYQCDLSDWAKVAKIASKIAKSTSRIDILFNNAGR--GIMT 131
                 68888*******************98877588877766666666666665558899*************************************..5778 PP

                 GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH....HCTTEEEEEEEEGGGTSB-TTB...............HHHHHHHHHHHHHHHHHHHHHGGGT.. CS
   adh_short  94 selseeewervievNltgvflltravlpaml....kqssGrIvnvsSvagkvpvagv...............aaYsAsKaavagltrslakelaptg.. 171
                  +l++  ++r ++vN  + + lt ++lp m+    +++  rIvn sS+a + +   v                 Y+ sK av   +r la+ l++t   
  KKY17991.1 132 YQLTDLGVDRHMAVNHIAHVILTSHLLPVMKktasEGHTVRIVNQSSNAHQASPSTVefssvdelnqdlgpnGQYGRSKLAVLLHARYLARHLSSTHpn 230
                 8899999************************9888788889999999987544332211111111112222257********************99888 PP

                 EEEEEEEESSBSSHHHHH CS
   adh_short 172 irvnavaPGlvdTdmake 189
                 i  na +PG+v+T m ++
  KKY17991.1 231 ILANATHPGFVATTMSTR 248
                 *************99875 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.8   1.7e-20     6e-17       1     183 [.      41     251 ..      41     283 .. 0.80

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 1.7e-20
                   TTTTSHHHHHHHHHHHTT-E.EEEEESSGGH.HHHHHHHHHHTTSE.E.....EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGG CS
  adh_short_C2   1 GaasgIGraiAkalaeeGae.vvltdlneea.kkrveelaeelgae.v.....lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfle 89 
                   G  +gIG+++  +l ++  + v +   +ee  +++++++ae+lg+  +     ++cD +d ++v+++++++++++ ++Dil+nnag        + +
    KKY17991.1  41 GLTEGIGYGVMYTLLKNNISkVHAISTSEEVkDAAINDIAENLGEPaAqkvqwYQCDLSDWAKVAKIASKIAKSTSRIDILFNNAGRGIM----TYQ 133
                   67789****99999888875387788888888999*********553244499**********************************999....889 PP

                   H-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC......CEEEEEEEGGGTSBSTTT.........T.......HHHHHHHHHHHHHHHHHHHHGG..G CS
  adh_short_C2  90 tsreefdraldvnlyslfllakaalplmkeg......gsivnlssvgaervvpny.........n.......aygaaKaalealtrylAvelgp..k 162
                   +++ ++dr ++vn  + + l+ ++lp+mk++       +ivn ss + + + p++         n        yg +K a+   +rylA++l +   
    KKY17991.1 134 LTDLGVDRHMAVNHIAHVILTSHLLPVMKKTaseghtVRIVNQSSNAHQ-ASPSTvefssvdelNqdlgpngQYGRSKLAVLLHARYLARHLSSthP 229
                   9999************************998777566558888887544.33321111111111111222368*******************98557 PP

                   TEEEEEEEE--BHCTG.GGGST CS
  adh_short_C2 163 giRvNavspgpikTla.asgik 183
                   +i  Na +pg+++T++ +++i+
    KKY17991.1 230 NILANATHPGFVATTMsTRDIH 251
                   9**************9555565 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   2.3e-07   0.00083       6      90 ..      40     126 ..      35     147 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.3e-07
                 ETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHH.HHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--- CS
          KR   6 tGGlGgLGlelarwlaekgarhlvllsRsaaadedskalia.eleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAg 90 
                 tG + g+G  ++ +l+++  +++  +s s+++++++ + ia +l +    +v+++++D+sd ++v+++ ++i +++++i   ++ Ag
  KKY17991.1  40 TGLTEGIGYGVMYTLLKNNISKVHAISTSEEVKDAAINDIAeNLGEPaAQKVQWYQCDLSDWAKVAKIASKIAKSTSRIDILFNNAG 126
                 78899**********************997766666655541565553559************************999999998887 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.8e-05       0.1       4     160 ..      41     213 ..      40     251 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.8e-05
                    TTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH.....T-SEEEE--S---HHHHTTS CS
  GDP_Man_Dehyd   4 GiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev.....qpdevynLAAqshVdvsfek 94 
                    G +  iG  ++  Ll+++   +  +  s++++ + i+ +a++  e + ++++++++Dl+D +++ ++ +++     ++d  +n A+     +++++
     KKY17991.1  41 GLTEGIGYGVMYTLLKNNISKVHAISTSEEVKDAAINDIAENLGEPAAQKVQWYQCDLSDWAKVAKIASKIakstsRIDILFNNAGRGIMTYQLTD 136
                    5555577777778888876555556778888889999999999999999******************99876666689999999998888777764 PP

                    ..HHHHHHHHTHH....HHHHHHHHHHCT...TTSEEEEEEEGGGG-S-SSSSB-...T.TS-----SHHHHHHHHH CS
  GDP_Man_Dehyd  95 ..PeytaevnvlG....tlrLLeairalgle.kkvrfyqaStsEvYGkvqevpqt...E.ttpfyPrsPYaaaKlya 160
                       ++ + vn ++    t +LL +++++  e ++vr++  S+     +++ v ++   E ++ + P+  Y+ +Kl+ 
     KKY17991.1 137 lgVDRHMAVNHIAhvilTSHLLPVMKKTASEgHTVRIVNQSSNAHQASPSTVEFSsvdElNQDLGPNGQYGRSKLAV 213
                    22344555554442222778899999886653678888888888888888777641214346678999999999876 PP

>> MCCD1  Mitochondrial coiled-coil domain protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012      0.43      20      59 ..     286     323 ..     275     327 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
       MCCD1  20 seesgkmlspsrepgtkrtaelaqaeelleqqlelyqall 59 
                 + ++g  + p++ p+    +el+q e l eq +el+++l+
  KKY17991.1 286 TVNTGEYICPPAVPE--SGTELSQDEGLAEQLMELTRSLI 323
                 567888889999998..89*****************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 2068.20
//
Query:       KKY17992.1  [L=338]
Description: putative calcium homeostasis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-70  235.0   0.2    1.2e-69  234.6   0.2    1.2  1  SGL       SMP-30/Gluconolactonase/LRE-like region


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.6   0.2   6.9e-74   1.2e-69       1     245 [.      46     297 ..      46     298 .. 0.96

  Alignments for each domain:
  == domain 1  score: 234.6 bits;  conditional E-value: 6.9e-74
         SGL   1 lgEGpvwdeeegaLlwvDilgqrihrldpatgketv..ldtpesvGaiaprkd..grlvvasksglalldlasgeletladeee.....dekpllrfND 90 
                 lgEGp+++ e+++L +vDi++++++ +d+++g+++   +dt ++ G++a+ ++   ++v+++k+g +++dl++g+ e+la+ ++     d+++ +r+ND
  KKY17992.1  46 LGEGPLYISERNELRFVDIWNEKLYVVDLEKGPSSLreYDTGKPFGVTADIEGsdTEIVAGAKDGYVRFDLTTGKQEYLAKLWDqddnpDNTRIMRMND 144
                 79********************************997788888999999966666***************************777778888899***** PP

         SGL  91 gvvdpdGrlwfGtmgdeeakgeev.galyrldpdgklervlddltipNGlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkgegepDG 188
                 g++d  Gr+w+G+ +d ++ +    g l+rldpdg+l+r+ +++tipNG+ w++ ++t+Y+aD +t++iw+ ++d ++ ++++rrvf++ +k++g +DG
  KKY17992.1 145 GACDTSGRFWVGSCSDPKVIDFTDhGILFRLDPDGSLHRMWEKITIPNGIQWNAKDDTMYMADGPTERIWQWSIDPNTANIKDRRVFFHQNKYPGHLDG 243
                 ****************999876557************************************************************************** PP

         SGL 189 lavDaeGnvwvAvwgggkvvrfdpdGklieeiklpakrvtscaFgGpdlrtLyitsa 245
                 +a D+eG++w+A++g+g+v+r++pdG++++ei lp++++t+++F+G+    Lyit+a
  KKY17992.1 244 SAFDEEGYLWSALYGAGRVIRISPDGEVVGEILLPTRNITCPTFAGTV---LYITTA 297
                 ***********************************99*******9998...*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2151.58
//
Query:       KKY17993.1  [L=565]
Description: putative at dna binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-47  160.5   0.1    5.6e-47  159.4   0.1    1.6  1  EVE       EVE domain
      1e-16   61.0   0.0    1.7e-07   31.3   0.0    2.9  3  Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal do
  ------ inclusion threshold ------
       0.02   14.7   2.2       0.02   14.7   2.2    2.7  2  AT_hook   AT hook motif


Domain annotation for each model (and alignments):
>> EVE  EVE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4   0.1   9.4e-51   5.6e-47       1     144 [.     393     551 ..     393     552 .. 0.96

  Alignments for each domain:
  == domain 1  score: 159.4 bits;  conditional E-value: 9.4e-51
                 -EEEEEEBHHT.........SHHHHH.CHHHCEEE-EE-GHHHHHHHCC--TT-EEEEEETSSSS-EEEEEEEEECEEEE-GGGG-TTSTT--TTTBTT CS
         EVE   1 ayWllksepde.........fsiddl.krkkeegWdgvrnyqarnllramkkGDlvlfYhsgeklqaivgiaeVvseaypdetqfdpkskyydpkskke 89 
                 +yWl+k+ep++         fsiddl + ++ e Wdgvrn  arn++ramk+GDl++fYhs++k+++ivg++++v+e+  de++fd++++yydpks+++
  KKY17993.1 393 QYWLMKAEPESriekgkdvkFSIDDLrNCSEPEAWDGVRNPVARNNMRAMKQGDLAFFYHSNCKNPGIVGLMKIVQEHSVDESAFDKSHPYYDPKSSPD 491
                 7*********99999***********99*********************************************************************** PP

                 S-.-EEEEEEEEEEEEEEEEHHHHTT..HG..TCTTSHHHHCCT-SEEEE-HHHHHHHHH CS
         EVE  90 kp.wlrvdvkpvkklkrplslkelka..ep..elegmkllrkgrlsvrpvteedwelile 144
                 kp w +v+v++v+k++++++l+ lk+  +p   l++m++l ++rlsv+ v++++w++i+ 
  KKY17993.1 492 KPkWDVVHVEFVRKFPEQIDLSRLKSfaQPggVLAKMQMLIQSRLSVSAVRPKEWNFIMG 551
                 **************************65336689************************86 PP

>> Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       0.4   2.4e+03      29      53 ..      41      67 ..      26      94 .. 0.67
   2 !   26.0   0.0   1.3e-09   7.9e-06       4      59 ..     127     183 ..     125     198 .. 0.85
   3 !   31.3   0.0   2.9e-11   1.7e-07      58     100 ..     243     288 ..     229     290 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.4
                HSSSSEEEEEEEETT..TEEEEEEEET CS
    Sod_Fe_C 29 avfgsGwawLvldkk..kkLeivttkn 53
                + +g  + wL ++++  ++L+ +t++ 
  KKY17993.1 41 SPQGYKFSWLQYQDTllQNLNRLTVDT 67
                456888999999987554554444443 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 1.3e-09
                 HHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEETT.TEEEEEEEETTTBGGG CS
    Sod_Fe_C   4 elaeaieedfgslekfkkefkaaalavfgsGwawLvldkk.kkLeivttknqdnplv 59 
                 +l+++i ++f s++++++e+ ++a a+fg G++w+v++++ + +++++t  + +pl 
  KKY17993.1 127 DLHADIANSFSSFQNLREEMLKTANAMFGPGFVWVVKEEEgGLMKVLSTYLAGSPLP 183
                 7999*********************************99945678888887777776 PP

  == domain 3  score: 31.3 bits;  conditional E-value: 2.9e-11
                 GGGTTCEEEEEE-SGGGTHHHH...TT-HHHHHHHHGGGBBHHHHH CS
    Sod_Fe_C  58 lvkeakplLalDvwehAYyldy...qnkradYieafwnvvnWkeve 100
                 l+k+  p+L++ vweh +  dy     ++a Y+e++w+ ++W++v+
  KKY17993.1 243 LTKTLRPVLCVKVWEHGWLYDYglgPRSKALYLERWWEAIDWEHVH 288
                 556667****************55557899*************996 PP

>> AT_hook  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   2.2   3.3e-06      0.02       1      12 [.     319     330 ..     319     331 .. 0.90
   2 ?    3.4   2.1     0.016        93       5      12 ..     342     349 ..     342     350 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.3e-06
     AT_hook   1 kRkRGRPrKaat 12 
                 +R+RGRPrK++t
  KKY17993.1 319 TRGRGRPRKSST 330
                 7********986 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.016
     AT_hook   5 GRPrKaat 12 
                 GRPrK +t
  KKY17993.1 342 GRPRKRST 349
                 9****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.52
# Mc/sec: 3278.38
//
Query:       KKY17994.1  [L=500]
Description: putative aldehyde dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.2e-184  614.2   0.4   1.4e-184  614.0   0.4    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  614.0   0.4  7.5e-189  1.4e-184       1     462 []      26     492 ..      26     492 .. 0.99

  Alignments for each domain:
  == domain 1  score: 614.0 bits;  conditional E-value: 7.5e-189
                 EET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH..HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHH CS
      Aldedh   1 wveses.etievinPatgeviakvpaataedvdaavaaAkeafk..awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaid 95 
                 +v+++s eti +i+P+t+++ia+v aa+++dvd av+aA++a +  +w++l++++R+++L+k+a+l e+++e la+let+++Gkp++ a a ++ e+i+
  KKY17994.1  26 FVKAKSgETITSIDPSTEKEIATVDAAGPDDVDIAVQAARKALNspEWRDLDVSDRSALLYKLAELAEQEREVLATLETWDNGKPYSVALAeDLGEVIN 124
                 577778688********************************998789********************************************9******* PP

                 HHHHHHHHHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTC CS
      Aldedh  96 vlryyaelaeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgs 194
                 v+ryya++a+kl g+++p+ ++k+a++ r+P+Gv+g+I+PWN+Pl+++awkl pala+GNt+vlKPae+tp+sal++a lfe+ag+P+gv+n+++g+g+
  KKY17994.1 125 VFRYYAGWADKLFGQTIPVGPKKFAYTLRQPVGVCGQIIPWNYPLAMLAWKLGPALACGNTIVLKPAEQTPISALYFATLFEKAGFPPGVVNILNGYGK 223
                 *******************99****************************************************************************** PP

                 CHHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHH CS
      Aldedh 195 evgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaa 293
                 ++g+a+++h ++dk++ftGst +g++i+k+aa n+k++tlE+GGk+pl+v++da++++a++++  g+++n+GQvC+a+sr++vqe +y+ f+ek+++ +
  KKY17994.1 224 SAGQAIASHLDIDKIAFTGSTVTGKQIQKTAAVNMKNITLETGGKSPLVVFDDANIEQAAKWAHIGIMYNQGQVCCATSRIFVQEAVYESFIEKFKAVT 322
                 *************************************************************************************************** PP

                 HT-.-BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT.E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHH CS
      Aldedh 294 kkl.kvgdpldedtdvGPliseaqlekvekyveeakeegaklllGge.reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieia 390
                 k+   vgdp+de+t  GP+++++q+e+v +y+e++k+egakl  Gg   ++ag+ kgyf+ePt++++v+p+m+i+qeEiFGP +svi+fk+eeea+++a
  KKY17994.1 323 KETsIVGDPFDEKTFQGPQVTKQQYERVLSYIESGKSEGAKLAFGGVpDTKAGNGKGYFIEPTIFTDVQPSMKIYQEEIFGPFASVISFKTEEEALAKA 421
                 888689*****************************************9999************************************************ PP

                 HSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 391 NdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 Ndt yGL+a+vft++le+a+rva+rle G+v+iN+s+++++   pfgGvkqSg+Gre g+++l  yt++k+v
  KKY17994.1 422 NDTTYGLGAAVFTTNLEKAHRVAARLESGMVWINSSNDSDHRV-PFGGVKQSGIGRELGEAALASYTQTKAV 492
                 *****************************************99.**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3452.52
//
Query:       KKY17995.1  [L=247]
Description: hypothetical protein UCRPC4_g05198 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-75  251.2   0.0    8.6e-75  251.0   0.0    1.0  1  Methyltransf_PK  AdoMet dependent proline di-methyltransferas
      6e-05   22.9   0.0    8.1e-05   22.5   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    0.00042   21.0   0.0     0.0007   20.3   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.058   14.1   0.0       0.11   13.3   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
        0.2    9.8   0.0       0.27    9.5   0.0    1.1  1  Pox_VERT_large   Poxvirus early transcription factor (VETF), 


Domain annotation for each model (and alignments):
>> Methyltransf_PK  AdoMet dependent proline di-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.0   0.0   2.4e-78   8.6e-75       7     218 .]      25     245 ..      19     245 .. 0.92

  Alignments for each domain:
  == domain 1  score: 251.0 bits;  conditional E-value: 2.4e-78
  Methyltransf_PK   7 ekaiaYWesveadvdGvLGGygavskiDvkgsrkflkklkkeslp......gkrevkvaldcGaGiGrvtknlLlkllskvDlvepvekfleka 94 
                      + +i+YW+s+++dv+G+LGGy ++s+iD+ gs +f++kl++ s +       + +   a+dcGaGiGr+t+ +L+k +  vD+vepv+kf +k+
       KKY17995.1  25 DSSIKYWNSISPDVNGMLGGYPQISRIDLRGSANFIAKLRRLSSTsprsesRQARLPLAVDCGAGIGRITEGFLVKAFDTVDIVEPVAKFADKI 118
                      6789*********************************998765543344335667778************************************ PP

  Methyltransf_PK  95 keelaeekkkvgkvyvvglqeftPeegrYdliWiqWcvghLtDedlvaflkrckkalkpnGlivvkenvake..ekdelDkeDssvtrseaklk 186
                      ke+  ++ k+vg+++++gl+ + P  ++Y+liW+qWc+ghLtD ++v++++rc +al+++G i vken+++    +d++D+ Dssvtrs++k+ 
       KKY17995.1 119 KEKKENGLKEVGDIFITGLESWLPS-KKYNLIWNQWCLGHLTDIQVVDYMRRCSEALAEGGWIAVKENLSTDafAEDIYDEVDSSVTRSDKKFL 211
                      ************************7.69****************************************9976114699**************** PP

  Methyltransf_PK 187 klfkkagLklvaeelqkglPk..elypvkmyaLk 218
                       lf++a+Lklv+ e q+g+Pk   lypvkmyaL+
       KKY17995.1 212 DLFEEADLKLVRGEIQTGFPKalGLYPVKMYALR 245
                      *********************7779*******96 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   2.3e-08   8.1e-05      26     133 ..      83     199 ..      54     223 .. 0.66

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2.3e-08
  Methyltransf_23  26 vLdiGcGtGillevlrengf.svtgvDlspeaveiaekakkaqkdqfdeqeaae.................pqgkfdlIvlrevlehvpd..pp 99 
                       +d G+G G+ +e +  + f +v+ v++  +  +++         ++  +   +                 p++k++lI +  +l+h+ d  + 
       KKY17995.1  83 AVDCGAGIGRITEGFLVKAFdTVDIVEPVAKFADKI---------KEKKE---NglkevgdifitgleswlPSKKYNLIWNQWCLGHLTDiqVV 164
                      5799*****999988666665788888875433333.........22111...112223444444455555888***************97789 PP

  Methyltransf_23 100 ellrqiatllkpgGylllseplasl.....kedrllldw 133
                       ++r+  + l++gG++ + e l+ +          ++++
       KKY17995.1 165 DYMRRCSEALAEGGWIAVKENLSTDafaedI----YDEV 199
                      *******************987766333330....3333 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.9e-07    0.0007       2      97 .]      84     178 ..      83     178 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.9e-07
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      +d+G+G Gr+t+ ++ +    +v  v++ +++ ++++e+ e +gl    ++    +e++ +++++++l++ + +l hl+d ++ +++++++++L
       KKY17995.1  84 VDCGAGIGRITEGFLVKA-FDTVDIVEPVAKFADKIKEKKE-NGLkeVGDIFITGLESW-LPSKKYNLIWNQWCLGHLTDIQVVDYMRRCSEAL 174
                      69*********9987664.5899999999999999999884.55543333333334443.57889******999******************** PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       +gG
       KKY17995.1 175 AEGG 178
                      ***9 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     3e-05      0.11       2      99 .]      85     180 ..      84     180 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3e-05
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdir..evldnirklL 93 
                      + G+G G++++ +l k     +  vDi + + + a +   k+en   ++ +++ + l++  +++++ l++   +l hl di+  ++++++ ++L
       KKY17995.1  85 DCGAGIGRITEGFLVK----AFDTVDIVEPVAKFADKIKEKKENGLKEVGDIFITGLESWLPSKKYNLIWNQWCLGHLTDIQvvDYMRRCSEAL 174
                      88***********999....88888888888855555555555555556666666665556669**************88887799******** PP

  Methyltransf_12  94 kpgGrl 99 
                      + gG++
       KKY17995.1 175 AEGGWI 180
                      ****86 PP

>> Pox_VERT_large  Poxvirus early transcription factor (VETF), large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   7.4e-05      0.27     126     169 ..     178     221 ..     147     232 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 7.4e-05
  Pox_VERT_large 126 lviwvaraadtslaelGsyeevdanilkfeerllevfkeldlel 169
                       i v ++  t    + +y+evd+++ + ++++l+ f+e dl+l
      KKY17995.1 178 GWIAVKENLSTDAFAEDIYDEVDSSVTRSDKKFLDLFEEADLKL 221
                     5577888889999999*************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 1572.53
//
Query:       KKY17996.1  [L=557]
Description: putative regulatory protein ral2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.21   11.8   0.0        1.2    9.4   0.0    2.0  2  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.092   1.6e+03      15      44 ..     200     229 ..     192     250 .. 0.71
   2 ?    9.4   0.0   6.5e-05       1.2      60     109 ..     313     367 ..     303     369 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.092
                 EEETTTEEEEE-HHHHHHH.-HHHHHHHTST CS
         BTB  15 lvvgdgkefkahkavLaar.SpyFkalftsk 44 
                 l++g g++++++  +L+ r   yF +l+++ 
  KKY17996.1 200 LAMG-GERIPVNSHILSRRwGAYFIQLLKDS 229
                 4556.89*********987468898888887 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 6.5e-05
                 GHHHHHHHHHHHHHSEEEC-.....CGGGHHHHHHHHHHHT-HHHHHHHHHHHHH CS
         BTB  60 epeafealLefiYtgeleit.....seenleelLaaadllqiprlkkaceeflkq 109
                 ++++++ l++++Yt+ l+       + + l +lL++a+ +qi+ l +a  e l q
  KKY17996.1 313 NHQTIQLLIRYLYTSSLPPItsplcTCQILCSLLQLARPYQIDGLLEATVERLHQ 367
                 678899**********987778888778899**************9999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3462.73
//
Query:       KKY17997.1  [L=227]
Description: putative mitochondrial peroxiredoxin prx1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-31  106.5   0.0    1.2e-30  106.0   0.0    1.2  1  AhpC-TSA    AhpC/TSA family
    4.6e-15   55.6   0.0      7e-15   55.0   0.0    1.2  1  Redoxin     Redoxin
    1.6e-12   47.0   0.1    2.9e-12   46.2   0.1    1.4  1  1-cysPrx_C  C-terminal domain of 1-Cys peroxiredoxin


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0   0.0     2e-34   1.2e-30       2     123 ..      11     147 ..      10     148 .. 0.96

  Alignments for each domain:
  == domain 1  score: 106.0 bits;  conditional E-value: 2e-34
                 TSB----EEESTTCEEEECHHHTT.SEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.......SSEEEE-TTSH CS
    AhpC-TSA   2 gdkapdfelknadgetvslsdykg.kpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekes......lnfpllsDeegk 93 
                 g  ap+f++++++ ++++++++ g ++vvlf +p+d +pvCttel a+akl +ef++rgv++ig+s+++ +sh  +i++++      l+fp++ D++++
  KKY17997.1  11 GSVAPNFKAETTN-GPIDFHEFIGdNWVVLFSHPEDYTPVCTTELGAFAKLEPEFAKRGVKLIGLSANTIDSHSGWIKDINeisganLTFPIIGDKQRQ 108
                 789*******998.9*******555************************************************************************** PP

                 HHHHTT-EETT.........TTECSCEEEEE-TTSBEEE CS
    AhpC-TSA  94 vakaygvlkee.........kglalratfvidkegkiry 123
                 va ay++l+ +           +++r++fvid+ +kir 
  KKY17997.1 109 VALAYDMLDHQdatnvdskgIAFTIRSVFVIDPSKKIRT 147
                 ********999*******99999**************95 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   1.2e-18     7e-15       3     135 ..      11     153 ..       9     163 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 1.2e-18
                 TSBB---ECCEETTCEEEEEHHHHTTSE.EEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH......TT-TSEEEE-TT CS
     Redoxin   3 gdkaPdftlplaatdgnsvslsefkgkk.vvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgk......eglkfpvlsDgs 94 
                 g+ aP+f+   a t + +++ +ef g + vv+++ p   +P+C++e+ +++kl+++++++gv+ ++++a++ +  + ++++       +l+fp++ D +
  KKY17997.1  11 GSVAPNFK---AETTNGPIDFHEFIGDNwVVLFSHPEDYTPVCTTELGAFAKLEPEFAKRGVKLIGLSANTIDSHSGWIKDineisgANLTFPIIGDKQ 106
                 6779****...56999*******888777999******************************************************************* PP

                 SHHHHHTT-TTEEE.GGG......EEE-EEEEEEETTEEEEEEESSS CS
     Redoxin  95 aaftkalGlrleedaseg......lrtpryavidedgkvvylevepe 135
                  +++ a+++   +da++       + +++++vid  +k++ +   p 
  KKY17997.1 107 RQVALAYDMLDHQDATNVdskgiaFTIRSVFVIDPSKKIRTILSYPA 153
                 ********9988888888999******************98755555 PP

>> 1-cysPrx_C  C-terminal domain of 1-Cys peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.1   4.9e-16   2.9e-12       1      36 [.     168     203 ..     168     206 .. 0.91

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 4.9e-16
                 HHHHHHHHT-BB-TTT.TBT-EEE---SSHHHHHHH CS
  1-cysPrx_C   1 ALQladkhgvatPAnWkpGdkvivpPpateedavkr 36 
                 +LQ+ dkh++ tP nW+pGd+viv P++++e a++ 
  KKY17997.1 168 SLQTGDKHKITTPINWVPGDDVIVAPSVSNEKAKEL 203
                 79*****************************77764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1583.02
//
Query:       KKY17998.1  [L=311]
Description: putative f-box domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-56  187.8   0.0    1.4e-55  187.1   0.0    1.3  1  DUF3506   Domain of unknown function (DUF3506)


Domain annotation for each model (and alignments):
>> DUF3506  Domain of unknown function (DUF3506)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.1   0.0     8e-60   1.4e-55       1     139 []     114     283 ..     114     283 .. 0.79

  Alignments for each domain:
  == domain 1  score: 187.1 bits;  conditional E-value: 8e-60
     DUF3506   1 elstystldpelytptkekPfqgiyvgdysghgceflllkqkdk................ddeae...............lekeedeseeeae...krk 65 
                 e++ty+tl+p lytptk+kP+qgi+vgdy+ghgcefl++ qkd                 d                   l           +   +  
  KKY17998.1 114 EVTTYATLHPDLYTPTKKKPYQGIWVGDYAGHGCEFLVVIQKDAvdiqvpepsaaygdmmD---AetawnaperpenedsL-----------RvrvE-- 196
                 589***************************************9966666666655554431...03334333222222211...........11110.. PP

     DUF3506  66 ee..............rgrleAiKLtGDpnvPrGevtFvaedlgeeGlvrvaeeeefkGarvvkskghiAeegFrndkfvdsqLllis 139
                  +              +g+leAiKLtGDpnvPrGe+tFva+d+g++G++rvae+e fkGar+vks+gh+A++gF+nd+f++sqL+l+s
  KKY17998.1 197 -NvtnpsnpaaddglhSGSLEAIKLTGDPNVPRGEYTFVADDIGPKGFIRVAEDEWFKGARIVKSRGHVAARGFTNDEFLPSQLILMS 283
                 .133344445555677999******************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 1947.61
//
Query:       KKY17999.1  [L=77]
Description: hypothetical protein UCRPC4_g05202 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-36  124.2   0.1    1.6e-36  124.0   0.1    1.0  1  DUF1748   Fungal protein of unknown function (DUF1748)


Domain annotation for each model (and alignments):
>> DUF1748  Fungal protein of unknown function (DUF1748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.0   0.1     9e-41   1.6e-36       1      69 []       3      75 ..       3      75 .. 0.97

  Alignments for each domain:
  == domain 1  score: 124.0 bits;  conditional E-value: 9e-41
     DUF1748  1 lgrlthyafDavLvSvvlAgvkrttglt...lnsdkitd.kdikkwvdkYLgvGEwvmDqsvavmgsSswFer 69
                lgrlthyafDavL+S++lAgvkr+tglt   ++sdki++ k++kkwvd+YLg+GEwvmDqsvavmgsSs+Fer
  KKY17999.1  3 LGRLTHYAFDAVLISAFLAGVKRSTGLTpasVSSDKISEsKELKKWVDNYLGIGEWVMDQSVAVMGSSSYFER 75
                7***************************7777889*************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.31s 00:00:00.74 Elapsed: 00:00:00.48
# Mc/sec: 484.66
//
Query:       KKY18000.1  [L=632]
Description: putative pyruvate kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-169  562.6   5.1   3.4e-169  562.2   5.1    1.1  1  PK         Pyruvate kinase, barrel domain
      2e-37  128.0   0.0    5.5e-37  126.6   0.0    1.8  1  PK_C       Pyruvate kinase, alpha/beta domain
     0.0051   16.0   1.0       0.02   14.0   1.1    1.9  2  HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
  ------ inclusion threshold ------
      0.068   12.2   0.0       0.54    9.2   0.0    2.0  2  IMPDH      IMP dehydrogenase / GMP reductase domain


Domain annotation for each model (and alignments):
>> PK  Pyruvate kinase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  562.2   5.1  7.6e-173  3.4e-169       2     347 ..     135     480 ..     134     481 .. 0.99

  Alignments for each domain:
  == domain 1  score: 562.2 bits;  conditional E-value: 7.6e-173
                 --SEEEEEESCCCTSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHTTTTS.-EEEEE---S-EBB--BTTCSSSEEE-TTSEEEEE-SCT CS
          PK   2 rrtkivctlGPasesvekleklieaGlnvvrlnfshGsheehqerienvreaekklgkk.vaillDtkGpeirtgllkdgkkdielkegdklkvsldek 99 
                 rrt+i++t+GP+++s+ek++ l++ Glnvvr+nfshGs+e+hq++i+n+r++ek ++++ +ai+lDtkGpeirtg++ + ++di +k+g++l++++d++
  KKY18000.1 135 RRTSIIGTIGPKTNSAEKITTLRKVGLNVVRMNFSHGSYEYHQSVIDNARQSEKDYPGRpLAIALDTKGPEIRTGNTPG-DQDIPIKAGTELNITTDDQ 232
                 9*******************************************************9999****************988.89***************** PP

                 CTTTBBTTEEEBS-TTHHHHS-TTEEEEETTTTEEEEEEEEETTEEEEEEESS-EEE-SS-BEE-TTS---S-SS-HHHHHHHHHHHHCT-SEEEETTE CS
          PK 100 lkeegdeelialdyknivkdvevGktilvdDGllslkvlevdeekeleveventgvlgskkgvnlpgtkvdlpalsekDkadlrfgvkqgvdliaasfv 198
                 +++++d++++++dykni+k++++Gk ++vdDG+ls++v +v ++k+l+v++ n+g+++skkgvnlpgt+vdlpals kD adl+fgvk+ vd+i+asf+
  KKY18000.1 233 YATASDDKNLYVDYKNITKVIDAGKLVYVDDGILSFEVIKVVDDKTLRVKCLNNGQISSKKGVNLPGTDVDLPALSKKDIADLQFGVKNRVDMIFASFI 331
                 *************************************************************************************************** PP

                 -SHHHHHHHHHHHTCCCTTSEEEEEE-SCHHHHTHHHHHHHSSEEEEEHHHHHHHSTCCCHHHHHHHHHHHHHHHT--EEEESSTTGGGGTSSS--HHH CS
          PK 199 rkasDvkevrevleeegkeikiiakienqegvenldeileasDgimvarGDlGieipaekvllvqkklikkcnlagkpvitatqmlesmiknPrptrae 297
                 r+++D+k++revl+eegkei+ii+kienq+g++n+deile++Dg+mvarGDlGieipa++v+++qk++i+kcn++gkpvi+atqmlesm++nPrptrae
  KKY18000.1 332 RRGDDIKAIREVLGEEGKEIQIISKIENQQGMNNFDEILEQTDGVMVARGDLGIEIPASQVFIAQKMMIAKCNIKGKPVICATQMLESMTNNPRPTRAE 430
                 *************************************************************************************************** PP

                 HHHHHHHHHHT-SEEEESHHHHTSS-HHHHHHHHHHHHHHHHHTS-HHHH CS
          PK 298 vsDvanavlDGtDavmLsgetakGkyPveavkamaevaleaekalkelkl 347
                 vsDvanav+DG+D+vmLsgetakG+yP eav++m++++l ae a+++++ 
  KKY18000.1 431 VSDVANAVIDGADCVMLSGETAKGNYPKEAVTMMHDTCLLAEVAIPYVNA 480
                 *********************************************99886 PP

>> PK_C  Pyruvate kinase, alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.6   0.0   1.2e-40   5.5e-37       1     117 []     496     620 ..     496     620 .. 0.98

  Alignments for each domain:
  == domain 1  score: 126.6 bits;  conditional E-value: 1.2e-40
                 HHHHHHHHHHHHHHT-SEEEEE-SSSHHHHHHHHT-TSSEEEEEESHHHHHHHHHHCTTEEHHH.HHHHH............TTSHHHHHHHHHHHTTS CS
        PK_C   1 eaiakaaveaaeelgakaIvvltesGetArliskyrpkvpiiavtpneltarqlalyrGvypvlvekakt.........aestdellreavkvakeagl 90 
                 e+i+++av+++ el+a aI+vlt+sG+tArl+skyrp +pii+vt+n++++r ++lyrGv p+ +++ k          +e++d++l++++  a++ g+
  KKY18000.1 496 ESISMSAVATSLELNAGAILVLTTSGHTARLLSKYRPVCPIIMVTRNPRASRYSHLYRGVWPFVYPEPKPdfshpdvdwQEDVDARLKWGISNAIKLGV 594
                 78***************************************************************99888***************************** PP

                 S-STSEEEEEE-SSSS..SS--EEEEE CS
        PK_C  91 vkkgdevvvtaGtpkgesgttNtlrVv 117
                 ++kgd+vv+++G++ g +g+tNt+rVv
  KKY18000.1 595 LSKGDNVVCVQGWRGG-QGHTNTIRVV 620
                 **************99.*********7 PP

>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   1.1   4.5e-06      0.02      97     175 ..     335     404 ..     302     446 .. 0.68
   2 ?   -1.3   0.0      0.22   9.7e+02      15      33 ..     435     453 ..     424     462 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.5e-06
                 HHHHHHHHHTSHTTTS---HCCC-EEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHTT-TTSTTSHHHHHHHHH CS
   HpcH_HpaI  97 eealevvsalrepekgirganketrllaqiEsaegvknaeeIaavegldgvflGaeDlsadlgtkrspegtevldarer 175
                 ++++++ ++l e       + ke++++  iE ++g++n +eI+  e+ dgv+++  Dl  ++ +++    ++++ a+++
  KKY18000.1 335 DDIKAIREVLGE-------EGKEIQIISKIENQQGMNNFDEIL--EQTDGVMVARGDLGIEIPASQVFIAQKMMIAKCN 404
                 444444444444.......5599*******************8..5677888888888888877775555555555554 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.22
                 HHHCTC--SEEEEESSTSS CS
   HpcH_HpaI  15 ekaaiagaDsvliDlEdav 33 
                  +a i gaD v++ +E a 
  KKY18000.1 435 ANAVIDGADCVMLSGETAK 453
                 6788999******999875 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00012      0.54      91     143 ..     135     187 ..      16     192 .. 0.90
   2 ?    0.4   0.1     0.056   2.5e+02     219     237 ..     431     449 ..     428     464 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00012
                 SXB-EEEEE-SSTTHHHHHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  91 grllvgaavgvkedalervkalveagvdvlvvdsahghsekvleavkeikkkv 143
                 +r  +  ++g k+++ e++++l + g++v+ ++ +hg  e+  +++++ +++ 
  KKY18000.1 135 RRTSIIGTIGPKTNSAEKITTLRKVGLNVVRMNFSHGSYEYHQSVIDNARQSE 187
                 56667789*******************************99999999888765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.056
                 HHHHHHHHHTT-SEEEESC CS
                 xxxxxxxxxxxxxxxxxxx RF
       IMPDH 219 sgdivkAlaaGadavmlGs 237
                   d++ A+  Gad+vml  
  KKY18000.1 431 VSDVANAVIDGADCVMLSG 449
                 5799************954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.53
# Mc/sec: 3575.14
//
Query:       KKY18001.1  [L=374]
Description: putative 26s protease regulatory subunit s10b [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-42  144.5   0.0    4.2e-42  143.7   0.0    1.4  1  AAA              ATPase family associated with various cellul
    4.3e-12   45.8   0.1    3.2e-11   43.0   0.0    2.2  2  Prot_ATP_ID_OB   Proteasomal ATPase OB C-terminal domain
    2.6e-10   39.9   0.0    6.1e-10   38.7   0.0    1.6  1  AAA_lid_3        AAA+ lid domain
      1e-06   29.3   0.0    0.00039   20.9   0.1    2.6  2  AAA_16           AAA ATPase domain
    2.8e-06   27.4   0.2    7.6e-05   22.7   0.1    2.8  2  AAA_5            AAA domain (dynein-related subfamily)
    5.8e-06   26.5   0.0    2.3e-05   24.6   0.0    2.0  2  AAA_2            AAA domain (Cdc48 subfamily)
      1e-05   25.3   0.0    2.2e-05   24.3   0.0    1.5  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00033   20.9   0.1      0.011   16.0   0.1    2.4  2  AAA_22           AAA domain
    0.00063   19.0   0.0     0.0017   17.6   0.0    1.7  2  DUF815           Protein of unknown function (DUF815)
     0.0018   17.8   0.0     0.0037   16.8   0.0    1.5  1  AAA_7            P-loop containing dynein motor region
     0.0024   18.4   0.0     0.0074   16.8   0.0    1.9  1  AAA_18           AAA domain
     0.0028   17.7   0.0     0.0052   16.8   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0048   16.3   0.0       0.01   15.2   0.0    1.5  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0054   16.0   0.0       0.01   15.1   0.0    1.4  1  TIP49            TIP49 P-loop domain
     0.0056   16.3   0.0      0.016   14.8   0.0    1.7  1  Prot_ATP_OB_N    Proteasomal ATPase OB N-terminal domain
     0.0084   16.3   0.0      0.025   14.7   0.0    1.9  1  AAA_33           AAA domain
  ------ inclusion threshold ------
      0.011   16.1   0.0      0.022   15.2   0.0    1.5  1  RNA_helicase     RNA helicase
      0.011   15.4   0.0      0.023   14.5   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
      0.014   15.1   0.0       0.05   13.3   0.0    2.0  1  Sigma54_activat  Sigma-54 interaction domain
      0.016   15.3   0.0      0.034   14.2   0.0    1.6  1  AAA_14           AAA domain
      0.022   14.1   1.5       0.11   11.8   0.0    2.6  4  ATPase           KaiC
      0.028   14.1   0.0      0.071   12.8   0.0    1.7  1  AAA_24           AAA domain
      0.033   14.0   0.0      0.081   12.8   0.0    1.6  1  AAA_3            ATPase family associated with various cellul
      0.049   13.5   0.1       0.12   12.3   0.0    1.7  2  NACHT            NACHT domain
      0.052   13.3   0.0       0.12   12.1   0.0    1.6  1  AAA_30           AAA domain
      0.089   11.9   0.0       0.16   11.1   0.0    1.3  1  Parvo_NS1        Parvovirus non-structural protein NS1
        0.1   12.1   0.0       0.18   11.2   0.0    1.3  1  PhoH             PhoH-like protein
       0.13   12.5   0.0       0.23   11.7   0.0    1.4  1  AAA_28           AAA domain
       0.16   11.6   0.0       0.33   10.5   0.0    1.5  1  AAA_25           AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.7   0.0   6.7e-45   4.2e-42       1     132 []     155     288 ..     155     288 .. 0.96

  Alignments for each domain:
  == domain 1  score: 143.7 bits;  conditional E-value: 6.7e-45
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 vllyGppGtGKTlla+ava+ l+++fl++  s +++ky+ges++ ire+f  ake++ p+i+f+DEida++++r    +s+++e +r++ +Ll++ldg+
  KKY18001.1 155 VLLYGPPGTGKTLLARAVASGLETNFLKVVSSAIVDKYIGESARLIREMFGYAKEHE-PCIIFMDEIDAIGGRRfseGTSADREIQRTLMELLNQLDGF 252
                 79******************************************************8.****************986666888889************* PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETTS CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 +   +k+ +i+atnrpd+ldpallr gR+drkiei+l
  KKY18001.1 253 DYL-GKTKIIMATNRPDTLDPALLRaGRLDRKIEIPL 288
                 **6.77****************************985 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   5.2e-14   3.2e-11       1      57 []      42      97 ..      42      97 .. 0.97
   2 ?   -0.1   0.0       1.5   9.3e+02       6      38 ..     296     329 ..     295     330 .. 0.73

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 5.2e-14
                    EEEEEEE-TTSSEEEEE-TTS-EEEEEE-GGGSSST--TTEEEEEETTTTEEEEEE- CS
  Prot_ATP_ID_OB  1 VatVsEvlddteraiVktssdeevvvslagavpremLrpgDlVavdkdtgfifEkLP 57
                    +++V + ld+ er iVk ss+  +vv + ++v+r++L++g++Va+d +t  i+  LP
      KKY18001.1 42 IGEVLKQLDE-ERFIVKASSGPRYVVGCRSKVDRSKLKQGTRVALDMTTLTIMRMLP 97
                    7899999***.******************************************9999 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.5
                     EE-TTSSEEEEE-TT..S-EEEEEE-GGGSSST-- CS
  Prot_ATP_ID_OB   6 EvlddteraiVktss..deevvvslagavpremLr 38 
                     E+l + ++a V   +  d e+vv++++ ++ ++Lr
      KKY18001.1 296 EILKI-HSASVALDGeiDFESVVKMSDGLNGADLR 329
                     66777.77777663323779999999999999998 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   9.9e-13   6.1e-10       2      45 .]     311     354 ..     310     354 .. 0.97

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 9.9e-13
   AAA_lid_3   2 vdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedfee 45 
                 +d++ ++++++G  GADl +++ eA+l A+++ +++++++df++
  KKY18001.1 311 IDFESVVKMSDGLNGADLRNVVTEAGLFAIKDYRESVNQDDFNK 354
                 8*****************************************86 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   6.2e-07   0.00039      22      51 ..     150     179 ..     122     194 .. 0.78
   2 ?    5.5   0.0     0.032        20     121     163 ..     198     247 ..     194     255 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 6.2e-07
      AAA_16  22 grpelvllsGesGvGKsslvrellralekd 51 
                   p  vll+G++G+GK+ l+r+++  le++
  KKY18001.1 150 KPPKGVLLYGPPGTGKTLLARAVASGLETN 179
                 34599******************9877766 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.032
      AAA_16 121 ellkrllallsrderplvlvlDdlq........wadeaslqllaaLlrlle 163
                 +l+++++ ++++ ++p ++++D+++           +a++++ ++L++ll+
  KKY18001.1 198 RLIREMFGYAKE-HEPCIIFMDEIDaiggrrfsEGTSADREIQRTLMELLN 247
                 577888899999.888*********88887665333355555555555544 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       7.5   4.7e+03      26      47 ..      62      83 ..      40      94 .. 0.59
   2 !   22.7   0.1   1.2e-07   7.6e-05       1     135 [.     154     275 ..     154     277 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 7.5
                -EEEEE--TT--HHHHH--B-- CS
       AAA_5 26 eveyvqltrdtteedlkgrrei 47
                +  +v ++++  +++lk+++++
  KKY18001.1 62 PRYVVGCRSKVDRSKLKQGTRV 83
                3444555555666666666655 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 1.2e-07
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..- CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.egeilvlDEveraesevlnsLlslleerrlllee 98 
                 +vlL GppGtgK+ la+ +a+ l+++++ v  ++      ++ ++   ++ ++l    +  a + e++i+++DE++ +    +++  s   e ++ l+e
  KKY18001.1 154 GVLLYGPPGTGKTLLARAVASGLETNFLKVVSSA------IVDKYI--GESARLIREMFGYAKEhEPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 244
                 59************************99998776......666666..444455555665555579999999999999988888888888888888888 PP

                 SSSEEE---......-EEEEEESS--.-TT-TTHHHH CS
       AAA_5  99 ggelvkaknddllerfrviatanpldrslnelspalr 135
                 + ++ +   +  l ++ +i+++n++d     l+pal+
  KKY18001.1 245 LLNQLDGFDY--LGKTKIIMATNRPD----TLDPALL 275
                 8777766554..45588999999988....7777776 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   3.8e-08   2.3e-05       6     104 ..     155     247 ..     150     262 .. 0.83
   2 ?   -2.2   0.0       6.4     4e+03      34      60 ..     337     363 ..     317     369 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3.8e-08
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqile 104
                 +ll gp g+Gkt+la+a+a+ l+     ++  +  s++    +     +rli +  gy +  e  i+++DEid i  ++ s+      ++qr L+ +l 
  KKY18001.1 155 VLLYGPPGTGKTLLARAVASGLET----NFLKVVSSAIVD--KYIGESARLIREMFGYAKEHEPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 247
                 6899******************95....677766676666..33444579999999*********************755555555679***9999986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 6.4
                 -EEEEEGGG-------THHHHHHHHHT CS
       AAA_2  34 kliradaselleeeevehlvsrligap 60 
                  ++++d +e   +++ ++ v +   a+
  KKY18001.1 337 LFAIKDYRESVNQDDFNKAVRKVAEAK 363
                 577888889999999999988877665 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.6e-08   2.2e-05      35      94 ..     154     221 ..     146     228 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 3.6e-08
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvk.lkitsgPvleka.gdlaalltnl....eekd..vlfideih 94 
                  vllyGpPG Gkt la+ +a+ l+++ lk+ s+ +++k  g+ a l+ ++    +e++  ++f+dei 
  KKY18001.1 154 GVLLYGPPGTGKTLLARAVASGLETNfLKVVSSAIVDKYiGESARLIREMfgyaKEHEpcIIFMDEID 221
                 69**********************99458899999988536666666665343333334488888886 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.8e-05     0.011       8      30 ..     155     177 ..     150     183 .. 0.87
   2 ?    2.5   0.0      0.26   1.6e+02      70     117 ..     194     247 ..     175     265 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.8e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqld 30 
                 ++++G++GtGKT+l+r +++ l+
  KKY18001.1 155 VLLYGPPGTGKTLLARAVASGLE 177
                 689**************999875 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.26
      AAA_22  70 aerlsseellealeqalraravielliiDEaqhlr....s.........eealeeLrslln 117
                 +   +s +l++ +  +++++    ++  DE++ +     s         +   ++L +lln
  KKY18001.1 194 G---ESARLIREMFGYAKEHEP-CIIFMDEIDAIGgrrfSegtsadreiQ---RTLMELLN 247
                 4...778888888888888888.9*********97765515556664441...33333333 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.9   3.7e+03     118     131 ..      25      38 ..      24      74 .. 0.66
   2 !   17.6   0.0   2.7e-06    0.0017      42     116 ..     139     220 ..     106     238 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.9
      DUF815 118 FeeeeeeyksLksv 131
                 Fe++e++ k+L+sv
  KKY18001.1  25 FETSEDNIKALQSV 38 
                 77777777777776 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 2.7e-06
      DUF815  42 enteqfleg..lpannvLLwGarGtGKSslvkallneyaeegLrlie..vekedlkelpklvellr...erperfilfvDDL 116
                 +n e fl+   +p + vLL+G  GtGK  l +a+ + ++++ L+++   +  + + e  +l++++    +++e +i+f+D +
  KKY18001.1 139 KNPELFLRVgiKPPKGVLLYGPPGTGKTLLARAVASGLETNFLKVVSsaIVDKYIGESARLIREMFgyaKEHEPCIIFMDEI 220
                 5666666532368899******************************644777888888888888753437778899999975 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     6e-06    0.0037      25     109 ..     144     220 ..     140     244 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6e-06
       AAA_7  25 llelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekrrkgvygPpggkklvvFvDDl 109
                 +l+  +k  k vll+Gp GtGKt++++ + + l+         nf +  s++ + + i ++    r+    ++ ++ +++F+D++
  KKY18001.1 144 FLRVGIKPPKGVLLYGPPGTGKTLLARAVASGLE--------TNFLKVVSSAIVDKYIGESARLIREMFGYAKEHEPCIIFMDEI 220
                 56666777899*********************99........6677777777777777777766665555566677777777776 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.2e-05    0.0074       1      69 [.     155     251 ..     155     279 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.2e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf....................gvnlrdvakenglllevdpe.......aldeskrldedkldklldaleenss 69 
                 +ll G+pG+GKt la+++++ l  +                     ++   +ake+++++ + +e        ++e   +d++ +  l+++l++ + 
  KKY18001.1 155 VLLYGPPGTGKTLLARAVASGLeTNflkvvssaivdkyigesarlIREMFGYAKEHEPCIIFMDEidaiggrRFSEGTSADREIQRTLMELLNQLDG 251
                 799***************9988433688888777777777776666666666777777666666677777777777777777777777777777665 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   8.3e-06    0.0052      21      59 ..     154     192 ..     124     203 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 8.3e-06
                 EEEEEESTTSSHHHHHHHHHHHTT--..----TTTTSEEEE CS
        TsaE  21 vilLeGdLGaGKTtlvrglakalgve..evkSPTFtlveeY 59 
                  +lL+G+ G+GKT l+r++a++l+ +  +v S   ++v +Y
  KKY18001.1 154 GVLLYGPPGTGKTLLARAVASGLETNflKVVSS--AIVDKY 192
                 49*********************9997876665..566666 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.7e-05      0.01      24      44 ..     154     174 ..     140     189 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.7e-05
  Mg_chelatase  24 nlllvGppGsGKtmlakrlps 44 
                    +ll+GppG+GKt+la++++s
    KKY18001.1 154 GVLLYGPPGTGKTLLARAVAS 174
                   589*************99875 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.6e-05      0.01      51      92 ..     153     192 ..     146     204 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.6e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevysle 92 
                 ++vLl Gp+gtGkt la a++  l   + f ++++s +    
  KKY18001.1 153 KGVLLYGPPGTGKTLLARAVASGLE--TNFLKVVSSAIVDKY 192
                 89*******************9886..889999999886655 PP

>> Prot_ATP_OB_N  Proteasomal ATPase OB N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.6e-05     0.016      11      46 ..      51      86 ..      41      88 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.6e-05
  Prot_ATP_OB_N 11 qdgtadVlvggrrmrVavsPlvdaeeLrpGqeVlLn 46
                   +++ +   ++g r++V    +vd ++L+ G++V L+
     KKY18001.1 51 EERFIVKASSGPRYVVGCRSKVDRSKLKQGTRVALD 86
                   5666677899***********************996 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     4e-05     0.025       2      44 ..     155     210 ..     155     266 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg...avllssdt..........lrrrlfgtdqqs 44 
                 vll G+pG+GK+ la+ ++  l      ++ss +          l+r +fg  +++
  KKY18001.1 155 VLLYGPPGTGKTLLARAVASGLEtnfLKVVSSAIvdkyigesarLIREMFGYAKEH 210
                 7899**************98888554444444446666677777666666655554 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   3.5e-05     0.022       1      44 [.     155     189 ..     155     223 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.5e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfw 44 
                   ++lyGp+g+GK++la+ +a+ l++++          + +++ ++
    KKY18001.1 155 VLLYGPPGTGKTLLARAVASGLETNFL---------KVVSSAIV 189
                   689**************9988886652.........22334444 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.7e-05     0.023      48      71 ..     153     176 ..     145     192 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.7e-05
   IstB_IS21  48 enivllGpsGvGKshlaialgvea 71 
                 ++++l Gp+G+GK+ la a++   
  KKY18001.1 153 KGVLLYGPPGTGKTLLARAVASGL 176
                 6799**************998654 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     8e-05      0.05      23      75 ..     153     208 ..     145     266 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8e-05
                      S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS......-TTCHHHHHHEBSS CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheaskrkekpfvavncaai......peelleseLFGhek 75 
                        vl+ G  GtGK+llara+ +  +    +f++v  +ai      ++  l  e+FG++k
       KKY18001.1 153 KGVLLYGPPGTGKTLLARAVASGLET---NFLKVVSSAIvdkyigESARLIREMFGYAK 208
                      679****************9876664...444444444411123323345567788765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   5.6e-05     0.034       5      76 ..     155     223 ..     152     258 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.6e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76 
                 +++ G+  +GKT l++ +++ l     ++l +      dk + ++++l+++++  +ke++  ++f+DEi  +
  KKY18001.1 155 VLLYGPPGTGKTLLARAVASGLE---TNFLKVVSSAIVDKYIGESARLIREMFGYAKEHEPCIIFMDEIDAI 223
                 7899**************98888...8888888888888777766555555555555578889******987 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.76   4.7e+02      74     125 ..       4      56 ..       2      84 .. 0.74
   2 ?   11.8   0.0   0.00018      0.11      13      37 ..     142     170 ..     118     178 .. 0.74
   3 ?   -2.2   0.0       3.5   2.2e+03     125     154 ..     220     249 ..     187     262 .. 0.61
   4 ?   -3.7   0.0       9.7     6e+03      73     108 ..     327     366 ..     324     371 .. 0.53

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.76
      ATPase  74 lekleeegklaiidasesaeesaee.kdkedleelieelaeaikeikakrvvi 125
                 l+++e++ k + +d+   +++ +++ ++ ++l+++ + + e++k++ ++r ++
  KKY18001.1   4 LREYEAKVKAVRMDIKGLQKDFETSeDNIKALQSVGQIIGEVLKQLDEERFIV 56 
                 67788888888888776555433222556666666777888888887777766 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00018
      ATPase  13 k....gGipegrvvlitGepGtGKtifal 37 
                 +     Gi   + vl++G pGtGKt++a 
  KKY18001.1 142 ElflrVGIKPPKGVLLYGPPGTGKTLLAR 170
                 0555589999999*************985 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.5
      ATPase 125 iDsitglayeekeavaReilrqlvrvlkkl 154
                 iD i+g   +e ++  Rei r+l++ l++l
  KKY18001.1 220 IDAIGGRRFSEGTSADREIQRTLMELLNQL 249
                 333333334444555566666666666554 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 9.7
      ATPase  73 dlekl.eeegklaiidasesaeesaee...kdkedleeli 108
                 dl+++  e g++ai d  es +++  +   ++ +++++l 
  KKY18001.1 327 DLRNVvTEAGLFAIKDYRESVNQDDFNkavRKVAEAKKLE 366
                 5555414557777777777766544433444455555555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00011     0.071       5      22 ..     155     172 ..     152     230 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +l+yGp+g+GKT la+  
  KKY18001.1 155 VLLYGPPGTGKTLLARAV 172
                 89************9987 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00013     0.081       2      30 ..     155     183 ..     154     192 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
       AAA_3   2 vllegvPGlaktllvkalakaldlefkri 30 
                 vll g PG++ktll++a+a+ l+++f ++
  KKY18001.1 155 VLLYGPPGTGKTLLARAVASGLETNFLKV 183
                 7999*********************9887 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0    0.0002      0.12       3      27 ..     155     179 ..     153     189 .. 0.88
   2 ?   -2.5   0.0       6.7   4.1e+03      87      94 ..     249     256 ..     213     270 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0002
                 EEEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaeg 27 
                 v+l G++G GKT L++ +a+ + ++
  KKY18001.1 155 VLLYGPPGTGKTLLARAVASGLETN 179
                 799****************999875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.7
                 EE-STT-S CS
       NACHT  87 lDglDelv 94 
                 lDg+D+l 
  KKY18001.1 249 LDGFDYLG 256
                 56666554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0    0.0002      0.12      21      53 ..     155     187 ..     149     204 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglA 53 
                 ++l Gp+GtGKt + +a++  +e++  +v+  A
  KKY18001.1 155 VLLYGPPGTGKTLLARAVASGLETNFLKVVSSA 187
                 5789****************9999988887766 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00025      0.16     117     139 ..     155     177 ..     148     184 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00025
   Parvo_NS1 117 vwfyGpantGktnlaeaIakavp 139
                 v++yGp+ tGkt la+a a ++ 
  KKY18001.1 155 VLLYGPPGTGKTLLARAVASGLE 177
                 89***************998765 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00029      0.18      22      41 ..     155     174 ..     147     195 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00029
                 EEEE--TTSSTTHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalav 41 
                 v   Gp GtGKt+la a+a 
  KKY18001.1 155 VLLYGPPGTGKTLLARAVAS 174
                 6789**********988874 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00037      0.23       2      21 ..     155     177 ..     154     223 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00037
      AAA_28   2 ivitGgestGKTtlleaLa...a 21 
                 + + G+++tGKT l++a a   +
  KKY18001.1 155 VLLYGPPGTGKTLLARAVAsglE 177
                 6799*************994442 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00054      0.33      36      54 ..     155     173 ..     140     184 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00054
      AAA_25  36 allaGapgtGKttlaldla 54 
                 +ll+G+pgtGKt la  +a
  KKY18001.1 155 VLLYGPPGTGKTLLARAVA 173
                 69***********986665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 2257.69
//
Query:       KKY18002.1  [L=438]
Description: putative enolase allergen asp f 22 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-152  506.2   0.1   3.4e-152  505.8   0.1    1.1  1  Enolase_C  Enolase, C-terminal TIM barrel domain
    1.8e-56  189.9   0.2    3.4e-56  189.0   0.2    1.5  1  Enolase_N  Enolase, N-terminal domain
    0.00012   21.7   0.0    0.00023   20.8   0.0    1.4  1  MR_MLE_C   Enolase C-terminal domain-like
  ------ inclusion threshold ------
      0.053   12.7   0.2        2.3    7.3   0.1    2.6  3  MAAL_C     Methylaspartate ammonia-lyase C-terminus


Domain annotation for each model (and alignments):
>> Enolase_C  Enolase, C-terminal TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  505.8   0.1  7.6e-156  3.4e-152       2     294 ..     144     434 ..     143     436 .. 0.99

  Alignments for each domain:
  == domain 1  score: 505.8 bits;  conditional E-value: 7.6e-156
                 -EE-EE-EEEEE-GGGSSSS--SSEEEEE-TT-SSHHHHHHHHHHHHHHHHHHHHHCC.GGGG-B-TTS-B----SSHHHHHHHHHHHHHHCT-TCTBE CS
   Enolase_C   2 lvlPvPalnvinGGshagnklalqefmilPvgassfkealrlGaevyhklksvlkkkygksatnvGdeGGfaPnlqsnkealdliveaiekaGykgkvk 100
                 +vlPvP++nv+nGGshag++la+qefmi+P+ a+sf+ea+r+Gaevy+klks++kk+yg+sa+nvGdeGG+aP++q+++ealdli++ai+++Gy+g+++
  KKY18002.1 144 YVLPVPFMNVLNGGSHAGGRLAFQEFMIVPSKAPSFSEAMRQGAEVYQKLKSLAKKQYGQSAGNVGDEGGVAPDIQTAEEALDLITSAIKESGYEGQMN 242
                 79************************************************************************************************* PP

                 EEEE--GGGCEETCTTEEECTTTTTT..GGCEEEHHHHHHHHHHHHHHS-EEEEES-S-TT-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT CS
   Enolase_C 101 ialdvassefykekdkkydldfkeeesdkskkltseqladlykelvkkyPivsiedpldeddweawkklteelgdkvqivGddltvtnpkrlkeaiekk 199
                 ia+dvassefyke+ kkydldfk+++sd++k++t+eqladlyk+l+ kyPivsiedp++eddweaw++++++ +  +qivGddltvtnp r+k+aie k
  KKY18002.1 243 IAMDVASSEFYKEDAKKYDLDFKNPDSDPEKWITYEQLADLYKSLAAKYPIVSIEDPFAEDDWEAWSYFFKTSD--FQIVGDDLTVTNPLRIKKAIELK 339
                 **************************************************************************..*********************** PP

                 --SEEEE-HHHH-SHHHHHHHHHHHHHTT-EEEEE--SC--S--HHHHHHHHCT-SEEE---S-SHHHHHHHHHHHHHHHHHGCC-EE-GGGCTT CS
   Enolase_C 200 aanalllkvnqiGsltesleavklakeagygvvvshrsGetedttiadlavglsaGqiktGaparserlakynqllrieeelgekakyaGkkvrk 294
                 ++nalllkvnqiG+ltes++a+k++++ag+gv+vshrsGeted+tiad++vgl+aG iktGaparserlak+nq+lrieeelg++a+yaG+++r+
  KKY18002.1 340 SCNALLLKVNQIGTLTESIQAAKDSYAAGWGVMVSHRSGETEDVTIADIVVGLRAGEIKTGAPARSERLAKLNQILRIEEELGKNAIYAGESFRT 434
                 *******************************************************************************************9986 PP

>> Enolase_N  Enolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.0   0.2   7.7e-60   3.4e-56       2     131 .]       4     134 ..       3     134 .. 0.97

  Alignments for each domain:
  == domain 1  score: 189.0 bits;  conditional E-value: 7.7e-60
                 EEEEEEEEE-TTS-EEEEEEEEETTC-EEEEE--B-BSSSSSS-B----SSTTSGGGT--HHHHHHHHHTHHHHHT..TSBTT-HHHHHHHHHHHH-ST CS
   Enolase_N   2 kkvkareildSrGnpTvevevttedgalgraavpsGaStgekealelrDgdkkrylgkgvekavenvnekiapali..gldvtdqeeiDkllielDgte 98 
                  k++ar+++dSrGnpTvev+v+te+g l ra+vpsGaStg++ea+elrDgdk++++gkgv+kav+nvne+i pa+i  +ldv+dq+++D++li+lD+t+
  KKY18002.1   4 AKIHARQVYDSRGNPTVEVDVVTETG-LHRAIVPSGASTGQHEACELRDGDKTHWGGKGVLKAVKNVNEVIGPAIIkeNLDVKDQTKVDDFLIKLDNTT 101
                 79*********************988.67**********************************************966699****************** PP

                 T-TTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH CS
   Enolase_N  99 nksklGaNailavSlAvakaaAkakelplyryl 131
                 nk++lGaNail+vSlA+aka+A++k++ply ++
  KKY18002.1 102 NKTSLGANAILGVSLAIAKAGAAEKGVPLYAHV 134
                 ******************************996 PP

>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     5e-08   0.00023      57     156 ..     275     375 ..     193     394 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5e-08
                 SBHHHHHHHHHHHGG.GTESEEESSSSTTTHHHHHHHHHHHH.SSEEEESTTSSS.HHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EE CS
    MR_MLE_C  57 wdlatAirvarelee.ldllwlEEPvppeddleglaelrara.sipiaagEslys.radfrelleagavdivqpdvsrvgGitearkvaalaeafgvpv 152
                  + ++   + + l++ + +  +E+P+   dd+e+     + + + +i+++    + + ++++++e + + ++ ++v+++g +te+++ a+   a+g+ v
  KKY18002.1 275 ITYEQLADLYKSLAAkYPIVSIEDPFAE-DDWEAWSYFFK-TsDFQIVGDDLTVTnPLRIKKAIELKSCNALLLKVNQIGTLTESIQAAKDSYAAGWGV 371
                 377888888999977799*********9.78********5.559*****9965444*********************************9777777776 PP

                 EEBS CS
    MR_MLE_C 153 apHs 156
                 ++ +
  KKY18002.1 372 MVSH 375
                 6544 PP

>> MAAL_C  Methylaspartate ammonia-lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.26   1.2e+03     194     217 ..      96     119 ..      78     126 .. 0.76
   2 ?    2.0   0.0     0.021        96     100     142 ..     254     296 ..     246     306 .. 0.88
   3 ?    7.3   0.1   0.00051       2.3     138     214 ..     315     392 ..     311     400 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.26
      MAAL_C 194 ylGGscnetdvsarvsvhvalatr 217
                  l  ++n t  +a+++  v+la+ 
  KKY18002.1  96 KLDNTTNKTSLGANAILGVSLAIA 119
                 556788999999999999999875 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.021
      MAAL_C 100 eeaaapyklliegPldagskeeqierlaelreklkekgikvel 142
                 +e a+ y+l + +P   ++k+   e+la l ++l++k   v++
  KKY18002.1 254 KEDAKKYDLDFKNPDSDPEKWITYEQLADLYKSLAAKYPIVSI 296
                 578999****************************998776655 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.00051
      MAAL_C 138 ikvelvaDeWcntle.direfvdaeaadlvqiktPDlGginntieavlyckekgvgaylGGscnetdvsarvsvhval 214
                 ++ ++v D+ + t    i++ ++ ++++++ +k+  +G+++++i+a   +   g g+++   + et+  + + + v+l
  KKY18002.1 315 SDFQIVGDDLTVTNPlRIKKAIELKSCNALLLKVNQIGTLTESIQAAKDSYAAGWGVMVSHRSGETEDVTIADIVVGL 392
                 67889999987665438**************************************99999999999877666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2962.28
//
Query:       KKY18003.1  [L=552]
Description: putative geranylgeranyl transferase type i beta subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-67  226.5  23.5    4.5e-67  226.5  23.5    2.0  2  eIF3_subunit    Translation initiation factor eIF3 subunit
    2.2e-11   43.3   0.8    5.4e-05   22.8   0.5    2.6  2  Prenyltrans     Prenyltransferase and squalene oxidase repeat
  ------ inclusion threshold ------
       0.47    8.9   7.5       0.73    8.3   7.5    1.3  1  Rrn6            RNA polymerase I-specific transcription-initi


Domain annotation for each model (and alignments):
>> eIF3_subunit  Translation initiation factor eIF3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.5  23.5   7.5e-71   4.5e-67       2     241 ..       4     276 ..       1     277 [. 0.86
   2 ?   -1.9   2.8      0.44   2.6e+03      25      48 ..     363     386 ..     357     414 .. 0.60

  Alignments for each domain:
  == domain 1  score: 226.5 bits;  conditional E-value: 7.5e-71
  eIF3_subunit   2 sdWDdedfepssvakkpavaa......kWddEdededvkdswdaeeeeeeekekakkaaeakak..aakakkkkskkqkiaekeerrkaeeeeaeee 90 
                   s+WD+e++e ss ++++++++      k+ddE++ ++v+dswdae++eee+k++a +aa+ kak  a++a++kksk+q+i+e++e+++++++++e e
    KKY18003.1   4 SKWDEEEEETSSGSEASTAPVvtstrrKFDDEEDSDEVVDSWDAEDSEEERKKAA-TAAAIKAKaeAEAAANKKSKAQRIEEHREAARRRRAAEEVE 99 
                   59**99994444443333333446899******999*******999888755555.4444455557******************8888888889999 PP

  eIF3_subunit  91 eeleeedeaarkerlrkaeeesDlknaadlFGgv....................attketdlssldlfnpktkedFeelrkalaekltklekksphY 167
                   + +++edeaar++rlr++e+++Dl++a+dlFG+v                    +  ++ dls+ +lf+p tk +Fe+l++al+++lt+++ ++phY
    KKY18003.1 100 DGSDDEDEAARRARLRQTEQDADLQHASDLFGSVglgpktrkttkavivedtakPG-QSIDLSQYPLFKPATKTQFEALSAALIPLLTASS-SQPHY 194
                   ****************************************************9655.9*********************************.999** PP

  eIF3_subunit 168 ssfleelirdlakslssedikkvassltvlaneKqkeeKaaekggKkkkkakaktslk.........adteayddddddyDDF 241
                     ++++++++++++l+s dikk+as lt+l+neK+keeKa++kggKk+k+ak k++l+         adt+ayddd    DDF
    KKY18003.1 195 GIWVQDFVKKITAPLPSSDIKKAASGLTALSNEKMKEEKAQDKGGKKTKAAK-KATLSagrdisrgaADTTAYDDDGLGDDDF 276
                   ************************************************8766.555444666667779999999888445999 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.44
  eIF3_subunit  25 ddEdededvkdswdaeeeeeeeke 48 
                   +dEde ed  d+  ++ ++ + +e
    KKY18003.1 363 EDEDESEDEQDDLKEDPQSLQHQE 386
                   445544444444444444443333 PP

>> Prenyltrans  Prenyltransferase and squalene oxidase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.5     9e-09   5.4e-05      19      44 .]     430     455 ..     430     455 .. 0.97
   2 !   18.2   0.0   2.5e-07    0.0015       1      44 []     460     504 ..     460     504 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 9e-09
                  -BBSSTTSSBBHHHHHHHHHHHHHCT CS
  Prenyltrans  19 GwggrpgsesdtyytywalaaLallG 44 
                  G++gr+++ +dt+y++w++ aLa+l+
   KKY18003.1 430 GFCGRANKIADTCYCFWNTGALAMLH 455
                  9***********************95 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 2.5e-07
                  HHHHHHHHHHHHHSH.TTS-BBSSTTSSBBHHHHHHHHHHHHHCT CS
  Prenyltrans   1 idvekavefLlscQn.edGGwggrpgsesdtyytywalaaLallG 44 
                  idv  ++++Ll + +   GG+g   g  +d  ++y +laaL++ G
   KKY18003.1 460 IDVTAMRRYLLEKTQhIVGGFGKGVGATPDIMHAYLGLAALSIYG 504
                  57788999***99999***************************87 PP

>> Rrn6  RNA polymerase I-specific transcription-initiation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   7.5   0.00012      0.73     719     796 ..      34     110 ..       3     177 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00012
        Rrn6 719 s.rsvsniLshWelgsdpaeydwqrtesaleaeeqrqrarrkrekrrrrkeklklasraeas.ssssssqssssksssss 796
                 + ++  +++++W+ +++++e  +++t++a++a+ + ++a +k++k +r  e + +a+r++a+ + +++s++++   + ++
  KKY18003.1  34 DeEDSDEVVDSWDAEDSEEERKKAATAAAIKAKAEAEAAANKKSKAQRIEEHREAARRRRAAeEVEDGSDDED---EAAR 110
                 2366889********99***9**********666655555555555554444333333333303333333332...3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1610  (0.0897987); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.50
# Mc/sec: 3296.88
//
Query:       KKY18004.1  [L=182]
Description: hypothetical protein UCRPC4_g05207 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-19   69.6   2.5      2e-19   69.0   2.5    1.3  1  zf-CSL    CSL zinc finger
    7.6e-13   48.4   0.8    2.4e-12   46.8   0.8    1.8  1  DnaJ      DnaJ domain
  ------ inclusion threshold ------
      0.014   16.2   0.4      0.023   15.5   0.2    1.4  1  PIN_3     PIN domain


Domain annotation for each model (and alignments):
>> zf-CSL  CSL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   2.5   3.4e-23     2e-19       2      58 ..     111     169 ..     110     170 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 3.4e-23
                 EEEGGGSEEETTTTEEEEEETTSSE..EEEEHHHHHTT....--EEEETTSSEEEEEE- CS
      zf-CSL   2 eveledfefdeeeesyyypCRCgde..FelteedleegaegaevvvqCssCSLwikVkf 58 
                 +v+led+++d++++ + ++CRCgde  +e+te +le ++ ++e+ v+C++CSL+ikV+f
  KKY18004.1 111 TVDLEDMDYDDDQQFWRRQCRCGDEraYEVTETELEGEQSHGEIYVGCKGCSLFIKVVF 169
                 79************************************99*****************98 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.8   4.1e-16   2.4e-12       1      63 []      11      86 ..      11      86 .. 0.83

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 4.1e-16
                HHHHHHTSSTT..G-HHHHHHHHHHHHHHHSTTTS........CCHHHHHH.......HHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskd..asedeIkkaYrklalkyHPDkn........pkdpeaee.......kFkeineAyevLsdpekRkqYD 63
                d+Y++Lg++k+   + +++k+aY+k  l++HPDk         +     ++          +++ Ay+vLsdp+ +++YD
  KKY18004.1 11 DHYNVLGLNKHvaVTPQQLKSAYHKALLRHHPDKAprrdstlpQ----GKQvagpdtvSIDRLSLAYQVLSDPKLKEEYD 86
                89*********6459******************99554433321....33356667779********************9 PP

>> PIN_3  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.2   3.8e-06     0.023      30     105 ..      71     147 ..      62     151 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.8e-06
       PIN_3  30 gaitlvvsprlldElervlarelaypqfklraadkaallakvaler.kavapdaelrpllkcrDpdDqkvlelAlaa 105
                  a++++ +p+l +E+ r la   + ++ +l  + ++a  ++v le  +  ++++ +r  ++c D+   +v e+ l++
  KKY18004.1  71 LAYQVLSDPKLKEEYDRLLATTNFAERSTLLGKAHHAGVETVDLEDmDYDDDQQFWRRQCRCGDERAYEVTETELEG 147
                 6899**********************9999999999999999966669999999**********9998888876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1191.27
//
Query:       KKY18005.1  [L=252]
Description: hypothetical protein UCRPC4_g05208 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1821.26
//
Query:       KKY18006.1  [L=371]
Description: putative actin binding [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-14   53.4   0.0    2.7e-13   50.5   0.0    2.3  2  Methyltransf_12  Methyltransferase domain
    1.4e-13   51.0   0.0    2.4e-13   50.3   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    5.6e-13   49.4   0.0    1.9e-12   47.7   0.0    1.9  2  Methyltransf_25  Methyltransferase domain
    6.2e-10   39.6   0.0    3.6e-09   37.1   0.0    2.1  2  Methyltransf_11  Methyltransferase domain
    1.3e-06   28.3   0.0    2.1e-06   27.6   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    5.2e-05   22.7   0.0     0.0001   21.8   0.0    1.4  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0028   16.9   0.0      0.062   12.5   0.0    2.1  2  NNMT_PNMT_TEMT   NNMT/PNMT/TEMT family
  ------ inclusion threshold ------
      0.068   12.3   0.0       0.11   11.7   0.0    1.2  1  DUF3419          Protein of unknown function (DUF3419)
      0.097   12.2   0.0       0.15   11.6   0.0    1.3  1  MTS              Methyltransferase small domain
       0.12   11.7   0.0       0.22   10.8   0.0    1.4  1  CMAS             Mycolic acid cyclopropane synthetase
       0.15   12.2   0.6          5    7.4   0.0    2.5  2  Roc              Ras of Complex, Roc, domain of DAPkinase


Domain annotation for each model (and alignments):
>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   1.7e-16   2.7e-13       1      99 []     144     250 ..     144     250 .. 0.94
   2 ?   -0.1   0.0      0.97   1.6e+03      19      41 ..     321     343 ..     304     347 .. 0.76

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 1.7e-16
  Methyltransf_12   1 LeiGcGtGsllrallekl..pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg........ssfDlvvasnvlhhl..kdi 82 
                      Le+G+G G++++++l+++  +++ + ++D+s+ a+    + +++ e+++ + ++ e+ d+++++ g        +s D+vv+++ +++l   ++
       KKY18006.1 144 LEVGAGAGNTAFPILRNNdnEELIVFAYDFSKTAV----KTIREDEGYDEKYIRAEVWDVASEENGglppgiepESLDVVVMIFIFSALspSQW 233
                      8*****************77777788*********....9999999999999******999998889*************************** PP

  Methyltransf_12  83 revldnirklLkpgGrl 99 
                      +++++ni ++LkpgG++
       KKY18006.1 234 EKAVKNIFQVLKPGGQV 250
                      ***************85 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.97
  Methyltransf_12  19 pdieytgvDispsaiedakekla 41 
                       + e+  +D+++++i++++++++
       KKY18006.1 321 GGFEIANLDVDRRMIVNRQRRIK 343
                      56788899*******88888776 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   1.4e-16   2.4e-13      21     157 ..     138     298 ..     110     299 .. 0.80

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 1.4e-16
  Methyltransf_23  21 raggrvLdiGcGtG.illevlrengf...svtgvDlspeaveiaekakkaqkdqfdeqeaaepqg............kfdlIvlrevlehvpd. 97 
                        ++rvL++G+G G +  ++lr n      v ++D s  av+ ++++  +  +  +++ +++ ++            + d++v+++ +  + + 
       KKY18006.1 138 AGKKRVLEVGAGAGnTAFPILRNNDNeelIVFAYDFSKTAVKTIREDEGYDEKYIRAEVWDVASEengglppgiepeSLDVVVMIFIFSALSPs 231
                      3467**********556677766633333677**********99977777777776666666444455788888888**************944 PP

  Methyltransf_23  98 .ppellrqiatllkpgGylllseplasl......kedrllldwlylvpagrhisffsarslkellee 157
                       +++++++i++ lkpgG +l++++++ +      k+ r++ ++ y + +g+ ++ff+ ++lk+++++
       KKY18006.1 232 qWEKAVKNIFQVLKPGGQVLFRDYGRGDlaqvrfKAGRWMGENFYVRGDGTRVYFFDIDELKRIWRQ 298
                      6***********************99887888877888888899999999**************986 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   1.2e-15   1.9e-12       1      97 []     143     248 ..     143     248 .. 0.88
   2 ?   -1.9   0.0       3.6   5.9e+03      21      43 ..     322     344 ..     305     355 .. 0.71

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 1.2e-15
                      EEEET-TTSHHHHHHHCTS.T.SSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC..CG...BS..SSTTTEEEEEEESTGGGSSHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl.g.kakvtgvDiseemleaareraeeeglnvefvqgda..ed...lp..fedgsfDlvvssgalhhlsdedleka 85 
                      vL++G+G G++++ ++++  + +  v + D+s+++++++re    ++  ++ ++ d+  e+   lp   e +s D+vv+++ ++ ls++++eka
       KKY18006.1 143 VLEVGAGAGNTAFPILRNNdNeELIVFAYDFSKTAVKTIREDEGYDEKYIRAEVWDVasEEnggLPpgIEPESLDVVVMIFIFSALSPSQWEKA 236
                      9*****************8635888999************99988878888888888542246777555999********99************ PP

                      HHHHHHHEEEEE CS
  Methyltransf_25  86 lkeiarvLkpgG 97 
                      +k+i++vLkpgG
       KKY18006.1 237 VKNIFQVLKPGG 248
                      ***********9 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.6
                      SSEEEEEESSHHHHHHHHHHHHH CS
  Methyltransf_25  21 kakvtgvDiseemleaareraee 43 
                        ++  +D++ +m+ + ++r++ 
       KKY18006.1 322 GFEIANLDVDRRMIVNRQRRIKM 344
                      37788899999999888888864 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   2.2e-12   3.6e-09       1      96 []     144     252 ..     144     252 .. 0.85
   2 ?   -0.6   0.0       1.4   2.2e+03      18      60 ..     321     360 ..     303     367 .. 0.65

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 2.2e-12
                      EEET-TTSHHHHHHHHTT....SEEEEEES-HHHHHHHHHHCCHHT-.....EEEETTEECCC..TS..S-TT-EEEEEEES-CCC-..CCHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg....arvvgvDlskemlklakekaseegl.....kvefvvadaek..lp..fednsfDlvvssevlhhv..edpek 79 
                      L+vG+G+G  a ++ ++       v++ D+sk+++k+ +e    ++         + va+ e+  lp  +e +s D+vv+ + +  +   ++ek
       KKY18006.1 144 LEVGAGAGNTAFPILRNNdneeLIVFAYDFSKTAVKTIREDEGYDEKyiraeV--WDVASEENggLPpgIEPESLDVVVMIFIFSALspSQWEK 235
                      89*************666678899**************999999988675431..34444444668557999***************999**** PP

                      HHHHHHHHEEEEEEEEE CS
  Methyltransf_11  80 alkeiaRvLkpgGllvi 96 
                      a+k+i +vLkpgG +++
       KKY18006.1 236 AVKNIFQVLKPGGQVLF 252
                      *************9876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.4
                      T.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT CS
  Methyltransf_11  18 g.arvvgvDlskemlklakekaseeglkvefvvadaeklpfedn 60 
                      g  ++ ++D++ +m+   +++++  +    ++++++ k p+ ++
       KKY18006.1 321 GgFEIANLDVDRRMIVNRQRRIKMYRC---WIQGRFMK-PLSSG 360
                      358899999999999555555555443...46666665.55555 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.3e-09   2.1e-06       4     113 ..     140     256 ..     138     301 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.3e-09
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkae..vvGiDiseeaielArenaqklgld..nveFeqgdieelekl.led....ekfDlilsnevl..na 86 
                      ++rvl++G+G+G+ +f + +  +++ e  v+  D+s++a++  re   + g+d   ++ e+ d+ + e+  l +    e+ D+++   ++    
       KKY18006.1 140 KKRVLEVGAGAGNTAFPILR-NNDNEEliVFAYDFSKTAVKTIRE---DEGYDekYIRAEVWDVASEENGgLPPgiepESLDVVVMIFIFsaLS 229
                      689**************995.45555555***********99888...7999987899********999888889999*****77765555335 PP

  Methyltransf_31  87 ladpdkileeiervlkpggilliedpr 113
                       +  +k+ ++i++vlkpgg +l +d+ 
       KKY18006.1 230 PSQWEKAVKNIFQVLKPGGQVLFRDYG 256
                      566789****************99876 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   6.1e-08    0.0001      49     156 ..     138     257 ..     115     274 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 6.1e-08
                      T...EEEEES-TT-HHHHHHHHHHHHHH.EEEEEES-HHHHHHHHH.HHHHHTSSTEEEEE--TTT...-T..TS-T-EEEEEEES-GGG-S.. CS
  Ubie_methyltran  49 a...kvlDvagGtgDlafklsdsvgekg.kvvvlDinenmLkvgek.klkeegkinieflqanaee...Lp..feddsfDvvtvsfGlrnvt.. 130
                      a   +vl+v +G+g+ af ++++ +++   v   D++++ +k+ ++    +e +i+ e     +ee   Lp   e +s Dvv + f +  ++  
       KKY18006.1 138 AgkkRVLEVGAGAGNTAFPILRNNDNEElIVFAYDFSKTAVKTIREdEGYDEKYIRAEVWDVASEEnggLPpgIEPESLDVVVMIFIFSALSps 231
                      333489*************999887766266678****99997665155666666655433322221335533456******999988877522 PP

                      -HHHHHHHHHHHEEEEEEEEEEEE-- CS
  Ubie_methyltran 131 DklkaLkeayrvlkpGGrlvvlefsk 156
                        +ka+k++++vlkpGG+++  ++ +
       KKY18006.1 232 QWEKAVKNIFQVLKPGGQVLFRDYGR 257
                      678***************98776666 PP

>> NNMT_PNMT_TEMT  NNMT/PNMT/TEMT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.048        78      17      84 ..     100     169 ..      88     183 .. 0.69
   2 !   12.5   0.0   3.8e-05     0.062     140     196 ..     198     251 ..     170     260 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.048
                     -HHHHHHHHCSTTTTSTC.CCCHHHHHHHHHHHHHHTSSS-ECEEEEET-..TT--GGGTTGGGTECEEEE CS
  NNMT_PNMT_TEMT  17 epraYLekyykkasedaa.eeqvvlfaLknllqtlatgekkgdtllDiGa..GPTvyqllsarevakeitl 84 
                     +p+++ + +yk++++    +++ ++   ++l ++ + g    + +l++Ga  G T + +l   ++ + i+ 
      KKY18006.1 100 NPEKWWNLFYKQKQNTFFkDRKWLRQEFPVLGEITQRG-AGKKRVLEVGAgaGNTAFPILRNNDNEELIVF 169
                     699999****9999988845558888999988777744.44567777765116688877777776666655 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.8e-05
                     E--TTSSSTTTTSS-SS..EEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEE CS
  NNMT_PNMT_TEMT 140 kvdvhqspvvlagvqlpkkadvvvtifcleaacedleeylralrnlasllkpGGhlv 196
                     +v  +++  + +g   p+ +dvvv if + a ++  +++ +a++n+ ++lkpGG ++
      KKY18006.1 198 DVASEENGGLPPG-IEPESLDVVVMIFIFSALSP--SQWEKAVKNIFQVLKPGGQVL 251
                     4444555555554.336789*********99988..5899**************987 PP

>> DUF3419  Protein of unknown function (DUF3419)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.6e-05      0.11     292     362 ..     211     281 ..     204     293 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.6e-05
     DUF3419 292 lkkksltravllDhmDWledeeleeeiqelnralkpggrvllRsaaeepwyakrfeklgFkvkavaaresg 362
                 ++++sl+++v++ +++ l+ ++ e+ ++++ ++lkpgg+vl+R  ++    + rf++  +  ++  +r +g
  KKY18006.1 211 IEPESLDVVVMIFIFSALSPSQWEKAVKNIFQVLKPGGQVLFRDYGRGDLAQVRFKAGRWMGENFYVRGDG 281
                 57899*************99*************************99998888887777766666666555 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     9e-05      0.15      32      77 ..     140     187 ..     129     252 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9e-05
                 CSEEEEET-TTSHHHHHHHHHTTC.E..EEEEESBHHHHHHHHHHHHH CS
         MTS  32 sgkvlDlGcGaGvlgaalakespeae..vtlvdvdarAlesakenlea 77 
                 +++vl +G+GaG  +  +++++++ e  v ++d ++ A++  +e    
  KKY18006.1 140 KKRVLEVGAGAGNTAFPILRNNDNEEliVFAYDFSKTAVKTIREDEGY 187
                 678****************9999888657789********99876544 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00013      0.22      64     170 ..     141     258 ..     132     284 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
                 -EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG---............--SEEEEES-GGGTSGGGHHHHHH CS
        CMAS  64 mtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedlde............kvdrvvsvgafehvgkenydtffk 150
                 +++L++G+G G+++    ++ d +   + +  +  k+a k++ e +  +++ ++   +   +e             +d vv + +f ++  +++++ +k
  KKY18006.1 141 KRVLEVGAGAGNTAFPILRNNDNE-ELIVFAYDFSKTAVKTIREDEGYDEKYIRAEVWDVASEengglppgiepeSLDVVVMIFIFSALSPSQWEKAVK 238
                 479999999999999998885544.4567788888888888888888888888888887666566777777777789********************** PP

                 HHHHHS-TT-EEEEEEEEE- CS
        CMAS 151 klkkllkedGllllhtitsl 170
                 +++++lk++G +l +   + 
  KKY18006.1 239 NIFQVLKPGGQVLFRDYGRG 258
                 ************98766655 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2      0.11   1.8e+02      55     107 ..      58     113 ..      40     117 .. 0.72
   2 ?    7.4   0.0    0.0031         5      28      68 ..     165     204 ..     157     207 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
                 CEEEEEEEE-S.GGCTTT.T-HHHHCTSCEEEEEEEGHHH.HCHHHHHHHHHHHCS CS
         Roc  55 kvklniWDtaG.qerfrs.lhplylreaalailvydsrss.enlkeWlkelkkvag 107
                  + +n WD     e+ ++  +  y  ++a  +  +d++++ +n ++W + + k+ +
  KKY18006.1  58 PFAFNAWDHVQpDEEHEKyCEVQYAMQRASPVSDFDRKRFnDNPEKWWNLFYKQKQ 113
                 5789999976524555543667888999999999*977762677999998777665 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0031
                 EETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGC CS
         Roc  28 ekstigvdfltkevtkikgvendkkvkkvklniWDtaGqer 68 
                 e   +++df+++ v++i++ ++  + k ++ ++WD+a +e+
  KKY18006.1 165 ELIVFAYDFSKTAVKTIRE-DEGYDEKYIRAEVWDVASEEN 204
                 4556788998888877776.44455688*********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 2424.70
//
Query:       KKY18007.1  [L=238]
Description: hypothetical protein UCRPC4_g05210 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-24   86.4  10.1    2.2e-24   86.4  10.1    1.4  2  FmiP_Thoc5     Fms-interacting protein/Thoc5
  ------ inclusion threshold ------
       0.85   10.1   4.3       0.32   11.5   0.3    2.1  2  PhoU           PhoU domain
        4.9    7.2  16.4      0.051   13.6   6.4    2.3  2  SPATA1_C       Spermatogenesis-associated C-terminus
        5.3    7.5  15.7       0.17   12.4   0.9    2.9  3  DUF4140        N-terminal domain of unknown function (DUF4140
        6.7    6.9  16.4      0.049   13.8   2.8    2.4  2  Phage_lysis    Bacteriophage Rz lysis protein


Domain annotation for each model (and alignments):
>> FmiP_Thoc5  Fms-interacting protein/Thoc5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2      0.82   2.9e+03     203     229 ..      34      59 ..      22      70 .. 0.59
   2 !   86.4  10.1   6.1e-28   2.2e-24       2     154 ..      76     233 ..      75     238 .] 0.95

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.82
  FmiP_Thoc5 203 akafnkssnsaeekkaeaessdsdses 229
                 a+++n++ +sae++ +  e++++ds++
  KKY18007.1  34 AQTLNQTEASAEND-EILEAQTTDSQT 59 
                 55555544444444.444445555544 PP

  == domain 2  score: 86.4 bits;  conditional E-value: 6.1e-28
  FmiP_Thoc5   2 LkklnrltklrikkardktaeakqkvDskhlqlqNllyEkshlekEikkcldFk.............skdeeieLvpeeeFyeeapeeiskpedtkkea 87 
                 L+  nr++ l++++++ +taea+q+vD++hlqlqNllyE  hle Ei +c+d++               + ++ L+pe eF+   pe+         + 
  KKY18007.1  76 LRGQNRAAILDVRATKSQTAEARQEVDRLHLQLQNLLYEQRHLEGEIAACEDYEiltnlfsylyensHAYAHLPLLPESEFLTLFPEHS--------DL 166
                 7889*************************************************************9888999***********999988........34 PP

  FmiP_Thoc5  88 dehelmlaRLewEleqRkelaeqlkeleekkkkleqeieekkkfLssLppkLkslkkatkplqealg 154
                  e elm  R+++E+ +R++l++q +el ++k +l +e+  +k+ L++L +++++ ++ +k + e l+
  KKY18007.1 167 PETELMPLRIQHEKSEREKLETQRQELLKQKAELVAENGRRKDDLKKLDERMEKFLEGAKGIMEVLE 233
                 7889**************************************************9999999988886 PP

>> PhoU  PhoU domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   8.8e-05      0.32       7      69 ..      64     135 ..      59     142 .. 0.80
   2 ?   -0.8   0.4      0.61   2.2e+03      21      47 ..     195     221 ..     187     234 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.8e-05
                 HHHHHHHHHHHHHHCT-HHHHHHHHHH.......HHHHHHHHHHHHHHHHHHHHHHGG-SH..HHHHHHHHH CS
        PhoU   7 iveemlddalealeekdtelarevier.......ddeidrlekeiersllealakrqplae..dlrellsll 69 
                 +++++l+  l++l+ +++ ++ +v++        ++e+drl+ ++++ l+e  + + + a+  d+++l++l 
  KKY18007.1  64 LAQKQLHSHLSILRGQNRAAILDVRATksqtaeaRQEVDRLHLQLQNLLYEQRHLEGEIAAceDYEILTNLF 135
                 6788888888888888887778887666677777****************9998888888888888877665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.61
                 CT-HHHHHHHHHHHHHHHHHHHHHHHH CS
        PhoU  21 ekdtelarevierddeidrlekeiers 47 
                 ++  el+ e  +r d++ +l +++e+ 
  KKY18007.1 195 KQKAELVAENGRRKDDLKKLDERMEKF 221
                 455688888888999999998888765 PP

>> SPATA1_C  Spermatogenesis-associated C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   2.4      0.51   1.8e+03     103     117 ..      91     105 ..      16     124 .. 0.53
   2 ?   13.6   6.4   1.4e-05     0.051       4      53 ..     177     226 ..     175     237 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.51
    SPATA1_C 103 iiqiiaaqheidelk 117
                   q ++a++e+d l+
  KKY18007.1  91 KSQTAEARQEVDRLH 105
                 223333333444333 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.4e-05
    SPATA1_C   4 krlkeerkelEerreellrkakelleqnkqkree.nqakeiWkkkyleeKk 53 
                 ++ k er++lE +r+ell+++ el+++n  ++++ +++ e    k+le  k
  KKY18007.1 177 QHEKSEREKLETQRQELLKQKAELVAENGRRKDDlKKLDER-MEKFLEGAK 226
                 56689***********************9999885555554.556787554 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.5      0.32   1.2e+03      56      88 ..      38      73 ..      16      79 .. 0.55
   2 ?   12.4   0.9   4.6e-05      0.17      42      93 ..      77     127 ..      73     130 .. 0.90
   3 ?    4.1   1.8     0.018        63      54      92 ..     178     208 ..     162     221 .. 0.52

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.32
     DUF4140 56 rvpnreaeee.....elkalraeleeledelaaledel 88
                ++++ +a  e     e ++++++ ++l  ++++l + l
  KKY18007.1 38 NQTEASA--EndeilEAQTTDSQTRSLLLAQKQLHSHL 73
                2222222..23355556666666666666666665555 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 4.6e-05
     DUF4140  42 egagaatildvqvervpnreaeeeelkalraeleeledelaaledelaaaea 93 
                 +g+++a ildv+ ++++  ea +e +++l  +l++l  e+++le e+aa e+
  KKY18007.1  77 RGQNRAAILDVRATKSQTAEARQE-VDRLHLQLQNLLYEQRHLEGEIAACED 127
                 47888**********888888886.**********************99875 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.018
     DUF4140  54 vervpnreaeeeelkalraeleeledelaaledelaaae 92 
                  e++        e ++l+ + +el +++a+l +e  + +
  KKY18007.1 178 HEKS--------EREKLETQRQELLKQKAELVAENGRRK 208
                 2222........344555555555555555544444333 PP

>> Phage_lysis  Bacteriophage Rz lysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   5.8      0.72   2.6e+03       9      56 ..      55     106 ..      31     110 .. 0.58
   2 ?   13.8   2.8   1.4e-05     0.049       4      59 ..     181     237 ..     178     238 .] 0.89

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.72
  Phage_lysis   9 vekdnaelraakaeieelqtrqr............avaeldakhtk.eLadaksendrlra 56 
                  ++ + + l +a++         +              a ld++ tk + a+a++e drl+ 
   KKY18007.1  55 TDSQTRSLLLAQK---------QlhshlsilrgqnRAAILDVRATKsQTAEARQEVDRLHL 106
                  2222222222222.........133333333344467999999887578999999999975 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.4e-05
  Phage_lysis   4 ekkrqvekdnaelraakaeieelqtrqr.avaeldakhtkeLadaksendrlradva 59 
                   +++++e++++el ++kae+   + r++ ++ +ld +  k L+ ak   ++l+++v 
   KKY18007.1 181 SEREKLETQRQELLKQKAELVAENGRRKdDLKKLDERMEKFLEGAKGIMEVLEREVH 237
                  6789999************99888877769**********************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1564  (0.087233); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 1461.42
//
Query:       KKY18008.1  [L=588]
Description: putative glutamyl-trna amidotransferase subunit a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-76  258.3   0.0    6.3e-75  252.8   0.0    2.0  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.8   0.0   3.5e-79   6.3e-75       1     450 [.      90     546 ..      90     547 .. 0.86

  Alignments for each domain:
  == domain 1  score: 252.8 bits;  conditional E-value: 3.5e-79
                 HHHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--T.TSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEE CS
     Amidase   1 elveaflkrieavneklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvk.gvpttaGskalenypaekDatvverLkkaGavilgk 98 
                 +lv+a++ ri +vn++l+ +vt ++++ala+Aa ld +r++g+ +g LhG+Pi++KDni++   ++ taGs al +   ++D+t+ ++L+k+Ga+ilgk
  KKY18008.1  90 DLVNAYVVRITEVNSRLH-AVTELNPDALAIAAMLDGERRNGNIRGLLHGIPILLKDNIATMdHMNNTAGSYALVGAKVPEDSTIASKLRKSGAIILGK 187
                 689***************.******************************************95699********************************* PP

                 E--SGGG-SSSSTT-TT.....---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEE CS
     Amidase  99 Tnmdefamgsstensvf.....gptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGp 192
                 +n++++a++ s ++s       g++   ++++  p GSS+Gs++a + gl+++ +G++t+GSi  P+  ++lvG+KPt+g+ Sr+ vv+++  +d++Gp
  KKY18008.1 188 ANLSQWAYWRSNNTSSGwsaygGQVSGAYYPDQDPSGSSSGSGVASSLGLALATLGSETAGSIIAPSERNNLVGIKPTVGLTSRYLVVPISERQDTIGP 286
                 *********9999887778889***************************************************************************** PP

                 EESSHHHHHHHHHHHBS--TT-TTS----.HHHHHHHHC.TT---TT-EEEEEGGGC.SS---CCHHHHHHHHHHHHHCTT-EEEE.EE-CCGGGHHH. CS
     Amidase 193 larsvedlalllrvilgedpkdstssvip.eesedlaee.lkkslkglriGvvkedg.vasldpevqravekalkaLeeaGhevve.velpsleeals. 286
                 +ar+v+d+a++l++i+g dpkd  +s ip  e +d+ e+ + ++l+g+r Gv+++    ++   +v +a+++al+ L++aG++v+e  ++  ++++ s 
  KKY18008.1 287 MARTVKDAAYMLQEIAGVDPKDNYTSAIPfTELPDYVEAcKFSALRGKRLGVPRNAIqIFNTASPVIKAFDAALDILRAAGATVIEnTNFTVIPSLRSg 385
                 ******************************66666666516699***********99899*********************877762446666665555 PP

                 .HHHHHHHHHHHHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCC.HHHHHHHHHHHHHHHHHHCCC.....BSEEE CS
     Amidase 287 .lyylilvaeassnlarylgvryerlsetkvlsellpksraellgeevkrrielgnyalsaeassky.ylkaqkvrrllrrefakafee.....lDvll 378
                  l  +il+a++ snl  yl++  ++++   +l+ +   +++++l+ + +r++  +   ls +  ++    +    ++l +   +++f +     lD+l+
  KKY18008.1 386 eLDHTILCADFTSNLPAYLSKLSYNPNSITDLQSVRNFTISHPLEAYPDRNVAIWDTSLSLGFNNSSpEFWPIYQEALRMAGPDGLFGAlqnhsLDALV 484
                 48899***************99999999*****************************999886655542222222233444455555556669999999 PP

                 EESSSSS--BCCCCCHHHCSHHHHHGCCTTT...HHHHHTT--EEEEECCCCT.TECEEEEEEESTT-HHHH CS
     Amidase 379 sPtaptpaprlgekdktidsytvlynlldftavvvpvnlaglpalsvpagksedglPvGvqvigkafqeetl 450
                 +Pt     ++                ++ ++ ++ p+++  ++  +  + +++ ++P G+ +ig++f+ee l
  KKY18008.1 485 LPTNFASVVPAIVG----------APVISVPLGAYPADTPVTKNKRGDLVDTAPNVPFGLSFIGDRFSEELL 546
                 99887777663322..........22333333334444444455556666777799**********999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 3923.97
//
Query:       KKY18009.1  [L=507]
Description: putative gpi transamidase component pig [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.4e-128  430.0   0.1   1.8e-128  429.6   0.1    1.0  1  PIG-S     Phosphatidylinositol-glycan biosynthesis class S pr


Domain annotation for each model (and alignments):
>> PIG-S  Phosphatidylinositol-glycan biosynthesis class S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  429.6   0.1    1e-132  1.8e-128      78     510 ..      50     500 ..      40     501 .. 0.92

  Alignments for each domain:
  == domain 1  score: 429.6 bits;  conditional E-value: 1e-132
       PIG-S  78 efsletrwslrlklseseeqee.........seseeeedgaltvrllpeedlstssaelskeskaldvvyppnsv...ssssdklsafvaeelvelfle 164
                 efs    ++lrl+l + ++ ++         +e++ + + altv+l p+e +++++++l++ s +  ++y+p+++   sss ++lsa++a+ l++lf+e
  KKY18009.1  50 EFS---PHHLRLRLISAKDVDSgsgnrgcglEETDAQAEPALTVKLDPRE-GHQPDLRLDNFSLDGNLLYTPSQLpsqSSSMSQLSAYLANKLHTLFIE 144
                 344...59******999988889*******98889999************.9999********************87444******************* PP

       PIG-S 165 eeeealisasksellsts........................krttrsikysptyhLsfsllnedpepssWdieaaleeylsplldaLspianftvetq 239
                 e  +a+i+ +    +  +                        +r trs++ys+t+hL+fsl++++++pssWdi +ale++++p ++aLs+i++ft+ +q
  KKY18009.1 145 E--QASIAYKFASQSAGQatrsngnpsaftrslpkglyekisSRDTRSFPYSNTFHLTFSLFSAGATPSSWDIADALETHIQPWVEALSSISEFTINSQ 241
                 *..888886655444444899********************9888****************************************************** PP

       PIG-S 240 vqyyaplslkpef...eev.aavvlskddLssfvnaaEwslsssi.sssptlnFvvyvPsksespllikdstgeqsktnsfliPqWGgvvilnppaeek 333
                 +q+y+++s   +      + ++  + + dLs+f+naaEw+ls+si s +pt+nFv+y+Ps  +spl i d++g++     +liPqWGgv i+np  + +
  KKY18009.1 242 IQLYSQFSPSVRLiedG-AtNSTRVAQADLSAFINAAEWPLSPSIgSAGPTINFVLYIPSIAQSPLTIADTNGAT----EWLIPQWGGVAIYNPMVTHD 335
                 ******99554446532.2467778********************999************************999....***************99873 PP

       PIG-S 334 kseg.sssaelseeelkevmevFssqLrsLLGlpseekleessspaslpllreweldtlkrrrtlelllsassTLgSLarLveslpnivIpdeVaedVe 431
                      + +++++++++++++++F +qL+ LLGlp      + + p  lpl    ++++l+r +t+ l lsassTLgSLarL++slp+i+Ip +V ++Ve
  KKY18009.1 336 G--ArTVPHHVDTKAVAAAFTTFRAQLLALLGLPG-----DHEVP--LPL----RIQSLRRLQTTALFLSASSTLGSLARLTQSLPSIPIPLSVSRSVE 421
                 3..2477***************************5.....44444..777....********************************************* PP

       PIG-S 432 salellesaldaleegrleealasareaealaerAFFdpsmlgqlYFPdEhkvAVYlPLlgPvlvplllgllkelkelk 510
                 s++++l ++++al  g++++al +areae++ae+AFF++sm+gq+YFPdEhkvAVYlPLlgP++ pl+lgl+ke+k+++
  KKY18009.1 422 STINHLAKTCSALALGHFDDALRQAREAEKEAEKAFFEKSMVGQVYFPDEHKVAVYLPLLGPISFPLILGLVKEIKRFI 500
                 *************88*************************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3389.61
//
Query:       KKY18010.1  [L=766]
Description: putative feruloyl esterase b precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-86  289.8   0.9    6.2e-86  289.2   0.9    1.3  1  Tannase   Tannase and feruloyl esterase


Domain annotation for each model (and alignments):
>> Tannase  Tannase and feruloyl esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.2   0.9   3.4e-90   6.2e-86      18     469 .]      67     522 ..      58     522 .. 0.89

  Alignments for each domain:
  == domain 1  score: 289.2 bits;  conditional E-value: 3.4e-90
     Tannase  18 kfevelPsewngrflqvGgggfagniqtttskaevlskalarGfatagtdaGhdasdadasfa.knpealldfayralkkvtdvakaLvkafygksper 115
                  f + lP ewn+r + +G+ gf g i+        ++   ++G + ++td+Ghd++++ a +a +np  + +++yra+++ +++ak +v+++y  +  +
  KKY18010.1  67 FFGLFLPDEWNNRLVGTGNTGFGGGINWPY-----MGVLSHYGVVAFSTDTGHDSNPNSAGWAlNNPVGITNWGYRAMHESLVMAKSVVHKYYSDKISY 160
                 57788**********************999.....677789**********************99999******************************* PP

     Tannase 116 sYfeGcSdGGRegltaaqRypddydGiiagapalnfvqlalygafsaraeatddldaiisaaelkviakavlaaCDalDgvaDglvqdpelCklafeve 214
                 sY++ cS GGR+gl  aq yp+d+dG   gap   + +l+ ++a    ++ ++d++  is   l  + k +++ CD+ Dgv+D +vq p +C ++++  
  KKY18010.1 161 SYYTACSGGGRQGLKEAQEYPEDFDGYAVGAPPWLLTHLHPWTAYVGIVNLEADDEVHISDDVLGNLTKPMIEICDPQDGVTDNIVQTPWSCDFNSS-- 257
                 *************************************************************************************************.. PP

     Tannase 215 sllCeagtgsngdscltaaqvavvaaiyeglknv.lssGerlylglevaseetdaagelasstakwelgstvkaesaaeealrnvvakfardlnldlss 312
                 sllC+ +t   +++clt +q     ++++++ +    +G  + +++   +  ++  g+   + a  ++g+          +++n++    + + ++ ++
  KKY18010.1 258 SLLCQNDT---QTNCLTPEQQPLFDTMWSDWVDStSTNGSIIAPTFMLGG-SMSGLGSTDADGAPSQFGT---------YYVENFII---NSTTWNWTT 340
                 ****9888...9******************98877889999999998555.5555666555555555555.........56777777...555555555 PP

     Tannase 313 lklealkerkttslvelsslidatepdlskfrsrgGklilyhgtaDpvvspadsikyyesveaklgad..leeleeFarlylvpGvaHcgggsgtsai. 408
                 +  e + e    + +    + +a++ dls+f +rgGk+++yhg aDp ++p  s++yy++v+++  +    +++ +F+r+y vpG++Hc g  +++++ 
  KKY18010.1 341 VSPEYTTE---LGDSFDPGSANADNFDLSPFYKRGGKMLHYHGLADPLIPPGWSVAYYDRVKSHFSQFspSANISDFYRFYPVPGLYHCHGSGTAPNFf 436
                 55532333...34445556778999**************************************9865577899****************8887788888 PP

     Tannase 409 ........................dlLealvdWVEngkaPerlvatkakkek.ksagrtrplcryPkiakykgkgsvekassftcv 469
                                         d++ a++dWVEng  P+ +  + ++++    + r  plc +P++a+ k +g++  a++++cv
  KKY18010.1 437 agggqtvdndtwthsvpgymdsshDIILAIMDWVENGTEPSLIATKWHNNQPgDGVYRQMPLCAWPQVARLKDHGDYRVADDWSCV 522
                 ****************************************98866554444335799****************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1219  (0.0679904); expected 358.6 (0.02)
Passed bias filter:                      623  (0.0347482); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.35s 00:00:01.16 Elapsed: 00:00:00.52
# Mc/sec: 4421.83
//
Query:       KKY18011.1  [L=763]
Description: putative hexose transporter protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-92  309.0  23.6    7.5e-92  308.5  23.6    1.2  1  Sugar_tr  Sugar (and other) transporter
      7e-30  104.1  17.6      3e-28   98.8  11.8    2.1  2  MFS_1     Major Facilitator Superfamily
    1.1e-20   73.7   0.3    3.3e-20   72.1   0.3    1.9  1  Mnd1      Mnd1 HTH domain
  ------ inclusion threshold ------
        6.7    6.5  12.5       0.78    9.6   0.1    3.6  4  DUF2182   Predicted metal-binding integral membrane protein (


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.5  23.6   1.7e-95   7.5e-92       4     452 .]      33     478 ..      30     478 .. 0.94

  Alignments for each domain:
  == domain 1  score: 308.5 bits;  conditional E-value: 1.7e-95
                 HHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS- CS
    Sugar_tr   4 vaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsv 102
                 +++l++  +gYd  ++++ +tl+  ++ f   + k+      +l+gl+ +i++vG+++   f+ +++d +GR+ +++i+++++  g vlq ++    ++
  KKY18011.1  33 FVVLTSATNGYDGSMMNGLQTLPHWQSYF--HNPKG------SLLGLLNCIMSVGGLCAIPFVPYAADLLGRRVGIAIGCLIMAMGVVLQSISA---NL 120
                 578999******************44333..33333......2689************************************************...9* PP

                 TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHT CS
    Sugar_tr 103 evlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvek 201
                  ++i++R+++G+gv +a + +P++i E+ ++++R +++++y++ + +G +vaa++++g+n+++n+++wr +   q++p+ l+li+++f+PESPr+++++
  KKY18011.1 121 SMFIAARFFIGFGVSIAHGSSPLLITELVHPQHRAIFTTIYNTTWYLGSIVAAWLTYGTNYIDNNWQWRAPTIAQIFPSALQLIFVWFVPESPRWYISR 219
                 *************************************************************************************************** PP

                 T-HHHHHHHHHH..HHHC...HHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HHH CS
    Sugar_tr 202 gkeeeakevlak..lrge...edadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks...llv 292
                 gk e+a +vla+   +g+   e+++ el+e+ d+++ eqe e++sw el+++k++r rl+i v   +f q +G+  + yy  ti++++g+++s    l+
  KKY18011.1 220 GKIEKAHKVLANchANGNlddELVQLELQEIRDTIKLEQEFESNSWLELFKTKGNRHRLIILVSAGFFSQWSGNGLVSYYIHTILNEIGYTNSltqNLI 318
                 ************76566688999**********************************************************************666666 PP

                 HHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS....CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHH CS
    Sugar_tr 293 tiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvaks.kaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalai 390
                 ++++ + nf++ +   f+vd++GRR+l+l+++agm+++f+i +i+ + ++ ++  aa+ +++ +i+++ ++++l w +++  +  E+ p ++R+k++++
  KKY18011.1 319 NGVLQIFNFITAVTMCFFVDKIGRRKLFLMSTAGMLCAFIIWTICSARYSISEnRAAAKAVVGMIYIYYFFYNLAWSGLLVGYTVEILPFNIRAKGMTV 417
                 7777777888888889***************************9999998888788888999999********************************** PP

                 HHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 391 avavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                  + +  +a f+ +++ p+++++ig +++++++ + + + +++v+ff++et + +leei + f
  KKY18011.1 418 MFLCVDIALFFNQYVNPVALDNIG-WKYYIFYCVWLGFELVVVWFFYIETRNTPLEEIAKHF 478
                 ************************.*********************************8765 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8  11.8   6.7e-32     3e-28       6     317 ..      39     393 ..      29     400 .. 0.80
   2 !    8.0   1.1   0.00027       1.2     108     182 ..     400     472 ..     388     496 .. 0.81

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 6.7e-32
       MFS_1   6 flsalarsilgpalpl.alaedlg.ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlgaga 101
                 + ++++ s+ + + +l + ++ ++   +s +gll  + ++g + a++++ + +d +Grr  + +g l++a g ++l  ++++l +++++r++ G+g ++
  KKY18011.1  39 ATNGYDGSMMNGLQTLpHWQSYFHnPKGSLLGLLNCIMSVGGLCAIPFVPYAADLLGRRVGIAIGCLIMAMG-VVLQsISANLSMFIAARFFIGFGVSI 136
                 555555555555555557777777466777******************************************.66664668988*************** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllgg...llasslgWravfyilaivsllafvlfllllpeepperkrkspkeee......... 188
                 +  ++  li++++++++r+  + ++++++ lG+i+++ l     ++  ++ Wra+ ++  + s+l ++ f++++pe+p+      ++e+          
  KKY18011.1 137 AHGSSPLLITELVHPQHRAIFTTIYNTTWYLGSIVAAWLTYgtnYIDNNWQWRAPTIAQIFPSALQLI-FVWFVPESPRWYISRGKIEKAhkvlancha 234
                 ***************************************998889999999**************977.456666666666666555555999****** PP

       MFS_1 189 .......................kgtgpaplvpawkallkdpvlwillialllfffgfsg...lltllplylqevlgls.glllaglllallalvgail 260
                                        +  +  ++++++k   ++  l  +++++++ff  +sg   +++++ ++     g++ +l +++ + ++l+++++i 
  KKY18011.1 235 ngnlddelvqlelqeirdtikleQEFESNSWLELFKTKGNRHRL--IILVSAGFFSQWSGnglVSYYIHTI-LNEIGYTnSLTQNL-INGVLQIFNFIT 329
                 99999999999888888888776555666666644444444455..8888888877777788799999997.9999***7655555.999********* PP

       MFS_1 261 allagrlsdrlgrrrrlllallllllaalglallavt.........ssavllll..vlvliGfglgfv 317
                 a+   +++d++grr+  l++ +++l+a++++ ++++              +  +  +++++ f++ ++
  KKY18011.1 330 AVTMCFFVDKIGRRKLFLMSTAGMLCAFIIWTICSARysisenraaA--KA--VvgMIYIYYFFYNLA 393
                 *********************************99996666543221..11..123444444444444 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00027
       MFS_1 108 aliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrk 182
                  +++++ p + r++++ ++ +++ ++  +   + ++ ++++gW +  + +  +++ ++v+  ++++ e ++ + +
  KKY18011.1 400 GYTVEILPFNIRAKGMTVMFLCVDIALFFNQYVNPVALDNIGWKYYIFYCVWLGFELVVV--WFFYIETRNTPLE 472
                 688999999***********************************9888888888888776..5554444444433 PP

>> Mnd1  Mnd1 HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.3   7.4e-24   3.3e-20       1      60 []     558     617 ..     558     617 .. 0.97

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 7.4e-24
        Mnd1   1 ileifqeskefytlKeleklapkekgivsqsVkdvlqsLvdDglveveKiGssnvyWsFp 60 
                 i +++++s++++tlK+lek++p  ++i+s  Vkd ++ L+dDg+++veKiG+ n+yWsF+
  KKY18011.1 558 IQKWIRTSRTCHTLKDLEKILPQIASINSILVKDFIKDLTDDGKLKVEKIGTGNWYWSFE 617
                 6799*******************************************************5 PP

>> DUF2182  Predicted metal-binding integral membrane protein (DUF2182)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.8     0.014        62      36      81 ..     153     198 ..     143     210 .. 0.79
   2 ?    9.6   0.1   0.00017      0.78      28      74 ..     270     316 ..     262     332 .. 0.81
   3 ?    0.1   0.1      0.14   6.4e+02     147     183 ..     320     357 ..     314     364 .. 0.77
   4 ?   -3.7   0.3       2.1   9.5e+03      44      58 ..     447     461 ..     442     477 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.014
     DUF2182  36 alvlfvagYllvWlafglvatllqlllealallspllasassllag 81 
                 + ++f++ Y ++W + ++va++l+++++ +   +++ a + + +  
  KKY18011.1 153 HRAIFTTIYNTTWYLGSIVAAWLTYGTNYIDNNWQWRAPTIAQIFP 198
                 5679999********************9999999888766444444 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00017
     DUF2182  28 rrrgkaaaalvlfvagYllvWlafglvatllqlllealallspllas 74 
                 +++g++ ++++l+ ag++  W   glv + ++ +l++++++++l ++
  KKY18011.1 270 KTKGNRHRLIILVSAGFFSQWSGNGLVSYYIHTILNEIGYTNSLTQN 316
                 5666777799****************************999887654 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.14
     DUF2182 147 Gvmnll.wmallalvvllEkllpagerlaravgvvllv 183
                 Gv +++ ++++++++ +++k+ +++  l++++g+++++
  KKY18011.1 320 GVLQIFnFITAVTMCFFVDKIGRRKLFLMSTAGMLCAF 357
                 55555426899************999999999987654 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 2.1
     DUF2182  44 YllvWlafglvatll 58 
                 + +vWl f lv++++
  KKY18011.1 447 FYCVWLGFELVVVWF 461
                 568999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (763 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       959  (0.0534888); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.46
# Mc/sec: 4972.88
//
Query:       KKY18012.1  [L=200]
Description: putative membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00067   19.9   0.0      0.001   19.3   0.0    1.3  1  UAF_Rrn10  UAF complex subunit Rrn10


Domain annotation for each model (and alignments):
>> UAF_Rrn10  UAF complex subunit Rrn10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   5.9e-08     0.001      63     110 ..      86     138 ..      66     145 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 5.9e-08
   UAF_Rrn10  63 iPdld.lrvvqdyatelllakykkl....iealdesslltlGllvekwvkdyl 110
                 +Pd d l++++++++++  +ky +     + +lde++l+++G+l+e+ + + l
  KKY18012.1  86 LPDSDlLKAIHQFSSDFFSKKYGRRaradYRSLDETALIAIGILLEETIAETL 138
                 67766369************997652222678**************9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1621.43
//
Query:       KKY18013.1  [L=223]
Description: putative secretory component protein shr3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-74  248.5   0.0    2.8e-74  248.2   0.0    1.0  1  SHR3_chaperone  ER membrane protein SH3


Domain annotation for each model (and alignments):
>> SHR3_chaperone  ER membrane protein SH3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.2   0.0   1.6e-78   2.8e-74       4     173 ..       5     197 ..       3     209 .. 0.97

  Alignments for each domain:
  == domain 1  score: 248.2 bits;  conditional E-value: 1.6e-78
  SHR3_chaperone   4 svataliigstsFflGvlfanfpyDynlLwssestee.afdaalehykflhaspplikrilhiviglgliglliklykpsednllFdgaSLvLyv 97 
                     s+at+li+++tsFflG+ f  +pyDy++Lwss +t++ ++d+ ++h+k+l++sppl++rilhi+i+lgligl++klykpse+n lFdg+SLvLy+
      KKY18013.1   5 SFATFLIVCPTSFFLGMAFCLLPYDYPVLWSSIPTPSsHYDQVEAHLKLLYNSPPLVERILHIIIFLGLIGLVWKLYKPSESNYLFDGGSLVLYM 99 
                     89********************************9999********************************************************* PP

  SHR3_chaperone  98 vgvvvyitnivkglrtvtegawge......................vdredslkvlaasntilalvLvGVlvLQaGqwYaerkeqeeleefeeee 170
                     +gvvvyi+ni kglr+v  g +ge                      ++red+lkvlaasntilalvLvGVlvLQaGqwYaer ++ e ++++e+e
      KKY18013.1 100 CGVVVYIANIIKGLRIVDDGTYGEglnspaaeeadmggytpegndvLGREDNLKVLAASNTILALVLVGVLVLQAGQWYAERADESEQRKIREKE 194
                     ******************************************************************************************99999 PP

  SHR3_chaperone 171 aee 173
                     + +
      KKY18013.1 195 SLQ 197
                     755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1443.73
//
Query:       KKY18014.1  [L=407]
Description: putative pantetheine-phosphate adenylyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-09   36.5   0.0    7.7e-09   35.9   0.0    1.3  1  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   4.3e-13   7.7e-09       2     143 .]     218     402 ..     217     402 .. 0.92

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 4.3e-13
                      EEE--TT--HHHHHHHHHHHHHSSES....EEEEEESSTHCSST-..SCSSTHHHHHHHHHHHTTCTTEEEEEEESEHH............... CS
  CTP_transf_like   2 agGtFDpiHlGHlrlleqakklleed....livgvpsdeppkkkk..kplasaeeRlemlelakevdevisvdpweltr............... 74 
                      +gGtFD +H+GH  ll  a+    ++    + +g++ de  k+kk  + + s ++R + + +++e+  ++s++  ++                 
       KKY18014.1 218 VGGTFDHLHIGHKLLLFGAALATTTKgerqITIGITGDELLKNKKfaEVIESWDTRQQRVAEFIESLLIFSPSGAVPRIergsepvangmfvkh 311
                      69**********99998887777666778899**********99999999999********************99998899************* PP

                      ..................HHHHHTTTTEEEEEEEHHHHHHHHCHHHHHHHHHHHHHEEEEEE......HTTCEEEEEEECCTTTCSHHHHHHH CS
  CTP_transf_like  75 ..................evlkklkpdklylvigadvledfsewkeleeilgnvklvvvsrp......ekqanvllkaekrtngiSstkirer 143
                                         ++++ ++   +lvi+a++ +     ++ +e  g+++l + +++       ++a   l +e   n+iSst ir+r
       KKY18014.1 312 yfpsgltidyvqisdpfgPTITDEEIT--ALVISAETRAGGAAVNQKREEKGWKPLEILEISvldtqaAQNASKNLNPEDFQNKISSTAIRQR 402
                      ***********9999999999999999..***********999**********************988666666699**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2592.51
//
Query:       KKY18015.1  [L=400]
Description: putative wd repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.5e-15   55.3   7.3    2.5e-06   28.1   0.0    5.4  5  WD40         WD domain, G-beta repeat
     0.0025   18.1   0.2        2.9    8.2   0.0    3.8  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.027   2.4e+02      10      37 ..      85     117 ..      77     118 .. 0.65
   2 !   13.3   0.4   1.3e-05      0.12       9      38 .]     158     189 ..     151     189 .. 0.77
   3 !   10.6   0.0   9.3e-05      0.83       7      38 .]     199     232 ..     194     232 .. 0.65
   4 ?   -2.3   0.0       1.1   9.8e+03      19      34 ..     279     295 ..     273     296 .. 0.60
   5 !   28.1   0.0   2.7e-10   2.5e-06       2      38 .]     306     344 ..     305     344 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.027
                 SSS.EEEEEEETTSSE.....EEEEETTSEEEEE CS
        WD40  10 Hss.vtslafspdgaw.....lasGsdDgtvriW 37 
                 Hs  vt + + p ++      l++ s   ++r+W
  KKY18015.1  85 HSYpVTRILWEPPSSNkqstdLLATS-GDHLRLW 117
                 62248888755555556667744467.8888888 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.3e-05
                 SS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                  H  ++tsl+++  ++  ++++s D t+ iWd
  KKY18015.1 158 EHtAPITSLDWNFVSPSlIITSSIDTTCTIWD 189
                 58778****7666666644699*********9 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 9.3e-05
                 EESSSS.EEEEEEETTSSE.......EEEEETTSEEEEEE CS
        WD40   7 ltGHss.vtslafspdgaw.......lasGsdDgtvriWd 38 
                 l +H+  v+++      ++       ++s++ Dg+vr++d
  KKY18015.1 199 LIAHDReVYDV------RFcaqsvdvFVSCGADGSVRMFD 232
                 55782257777......443333344678888******98 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.1
                 ETTSSEEEEE.ETTSEE CS
        WD40  19 spdgawlasG.sdDgtv 34 
                 sp+ a l++  s D +v
  KKY18015.1 279 SPHDAHLLATfSQDSSV 295
                 55555555444778776 PP

  == domain 5  score: 28.1 bits;  conditional E-value: 2.7e-10
                 EEEEEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 
                 q l +l+GH   v+++ +s++++ l asG dD+ v++Wd
  KKY18015.1 306 QALLELKGHnAAVNCIEWSQNHRGLlASGADDCMVMVWD 344
                 67889****555****999999997268899*******9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.0    0.0095        85      33      81 ..     155     204 ..     140     214 .. 0.74
   2 ?   -0.6   0.0      0.18   1.6e+03      38      69 ..     203     235 ..     186     246 .. 0.68
   3 !    8.2   0.0   0.00033       2.9       9      62 ..     285     340 ..     280     349 .. 0.57
   4 ?    0.5   0.0     0.084   7.5e+02      38      56 ..     372     390 ..     364     397 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0095
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgk.lLavaysdgevrlldaesgkvvhslsvkse 81 
                  +++++   ++sL W+     l+  +  d+++ + d+ + +   +l +++ 
   KKY18015.1 155 KSPEHTAPITSLDWNFVSPsLIITSSIDTTCTIWDIPTLTAKTQLIAHDR 204
                  56788999*******87650555566799999999988777777776666 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.18
  ANAPC4_WD40  38 dsevrsLaWkpdg.klLavaysdgevrlldaes 69 
                  d+ev ++++  +   +++   +dg+vr++d  s
   KKY18015.1 203 DREVYDVRFCAQSvDVFVSCGADGSVRMFDLRS 235
                  555555555443314666667889998888765 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.00033
  ANAPC4_WD40   9 LiAlatedgellv...fRlngqrvwtleedkedsevrsLaWkpdgk.lLavaysdgev 62 
                  L+A  ++d++++     R  gq + +l  ++++  v++++W+++ + lLa + +d  v
   KKY18015.1 285 LLATFSQDSSVVRvldVRQPGQALLEL--KGHNAAVNCIEWSQNHRgLLASGADDCMV 340
                  444444444432111146666777777..67777777777777766355555555555 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.084
  ANAPC4_WD40  38 dsevrsLaWkpdgklLava 56 
                  d ev++L+W p ++ L v+
   KKY18015.1 372 DYEVNNLSWAPGDNGLGVV 390
                  679********99999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2656.71
//
Query:       KKY18016.1  [L=461]
Description: putative autophagy-related protein atg28 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-05   22.6   4.6     0.0092   16.1   1.0    2.7  2  RasGAP_C        RasGAP C-terminus
     0.0076   16.3   3.5      0.027   14.5   0.7    2.5  2  PilJ            Type IV pili methyl-accepting chemotaxis tran
  ------ inclusion threshold ------
       0.21   12.0   8.3       0.73   10.2   5.8    2.8  2  V-SNARE         Vesicle transport v-SNARE protein N-terminus
       0.89   10.0   5.6       0.52   10.7   1.5    2.8  2  CLZ             C-terminal leucine zipper domain of cyclic nu
        2.7    8.6  10.3        3.7    8.2   4.6    3.5  2  Syntaxin-6_N    Syntaxin 6, N-terminal
        3.3    6.9  14.7      0.091   12.1   4.9    2.4  2  DUF3450         Protein of unknown function (DUF3450)
          5    7.3  12.6       0.45   10.7   1.1    3.1  3  Fib_alpha       Fibrinogen alpha/beta chain family
        5.2    7.5   6.6        4.4    7.8   1.5    3.1  4  FlaC_arch       Flagella accessory protein C (FlaC)


Domain annotation for each model (and alignments):
>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   1.0   4.1e-06    0.0092      37      90 ..      89     142 ..      44     171 .. 0.90
   2 !    7.2   0.1    0.0023       5.2      71      94 ..     234     261 ..     208     288 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.1e-06
    RasGAP_C  37 dirnkgrlrekrkeElesleetlktLseknnylesqlesYkayienvleqlkkk 90 
                  ++++++  +++++E++ le+tl +L+ k + l sq +++++ i   l+  +++
  KKY18016.1  89 KMAELKSSAQEVEAEIHELETTLYELRAKHRHLTSQAKHLENSIAAKLSSYQAS 142
                 567888999***********************************9988888766 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0023
    RasGAP_C  71 sqlesYkayienvleqlkkkkgk....l 94 
                 ++++s+++y++ +++ql+k++++     
  KKY18016.1 234 KEIDSFEKYLHDSMKQLQKQHQEplisD 261
                 67999************99975544331 PP

>> PilJ  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.7   1.2e-05     0.027      22      93 ..      86     155 ..      85     175 .. 0.60
   2 ?    1.6   0.1      0.12   2.6e+02      38      82 ..     234     278 ..     215     298 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.2e-05
        PilJ  22 qsqRlakeallaaagaydaaearaqlretiaqfdrtlaalrlgdpapgllvpae...........avraqleaveqlWqelkk 93 
                 qsq++a           +  ++ +++++ i+++++tl++lr +    + ++  +           + +a+l+ ve++ q++++
  KKY18016.1  86 QSQKMA-----------ELKSSAQEVEAEIHELETTLYELRAKHRHLTSQA--KhlensiaaklsSYQASLQIVEKDVQRFLR 155
                 89****...........2355555555555555555555555543322222..223453333377777777777777777765 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.12
        PilJ  38 ydaaearaqlretiaqfdrtlaalrlgdpapgllvpaeavraqle 82 
                  ++++  + l ++++q++++++++  +d++ ++   ++  ++ ++
  KKY18016.1 234 KEIDSFEKYLHDSMKQLQKQHQEPLISDEESPQNLKTDIAHSLIQ 278
                 456777778899999999999999888777666665534444444 PP

>> V-SNARE  Vesicle transport v-SNARE protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   5.8   0.00033      0.73      15      79 .]      85     152 ..      66     152 .. 0.79
   2 ?    0.7   0.0      0.32   7.2e+02      36      54 ..     272     290 ..     268     297 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00033
     V-SNARE  15 lsslageerkaalreiekkldeaeelldqMelEvrnlps...serasykaklreykselkklkkelkr 79 
                  +s+  +e k+  +e+e+++ e+e+ l ++    r l s      +s+ akl +y++ l+ ++k+++r
  KKY18016.1  85 DQSQKMAELKSSAQEVEAEIHELETTLYELRAKHRHLTSqakHLENSIAAKLSSYQASLQIVEKDVQR 152
                 334433788999999999999999999999999999944366899******************99985 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.32
     V-SNARE  36 eaeelldqMelEvrnlpss 54 
                  a +l+++M l + +l s+
  KKY18016.1 272 IAHSLIQRMTLTITSLESN 290
                 5899*******99999764 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.5   0.00023      0.52      18      65 ..      87     136 ..      78     153 .. 0.86
   2 ?   -0.9   0.1      0.96   2.1e+03      36      63 ..     243     270 ..     233     290 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00023
         CLZ  18 e..aakagaeqkeleekverLessLeaLqtrlarLlaeyessqrkLkqRi 65 
                 +  +a+ ++ ++e+e  +++Le++L  L  + + L ++ ++ ++ + +++
  KKY18016.1  87 SqkMAELKSSAQEVEAEIHELETTLYELRAKHRHLTSQAKHLENSIAAKL 136
                 4346777799**************************99998888777665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.96
         CLZ  36 LessLeaLqtrlarLlaeyessqrkLkq 63 
                 L  s+++Lq++ +  l   e+s + Lk 
  KKY18016.1 243 LHDSMKQLQKQHQEPLISDEESPQNLKT 270
                 6666777776666555555555555554 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.6    0.0016       3.7      22      66 ..      88     145 ..      27     157 .. 0.62
   2 ?    1.0   0.3      0.28   6.4e+02      10      50 ..     232     276 ..     226     297 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0016
  Syntaxin-6_N  22 rrwerlledtss..stseeldetrteLrkalrsiewdledLeetv...........ri 66 
                   +++ +l++++++  ++ +el+ t  eLr++ r +  + + Le+++           +i
    KKY18016.1  88 QKMAELKSSAQEveAEIHELETTLYELRAKHRHLTSQAKHLENSIaaklssyqaslQI 145
                   2223333333332224566666666666666666666666666663333333333333 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.28
  Syntaxin-6_N  10 Vqkslnkaes.lyrrwerlledtsss...tseeldetrteLrkal 50 
                   V k++++ e+ l++++++l+++ +++    +e+ ++++t++  +l
    KKY18016.1 232 VIKEIDSFEKyLHDSMKQLQKQHQEPlisDEESPQNLKTDIAHSL 276
                   666777776624555578888877733435566666666665544 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   4.9     4e-05     0.091      20     102 ..      73     154 ..      57     156 .. 0.78
   2 ?   -0.2   2.2      0.22   4.9e+02      25      80 ..     198     256 ..     186     290 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4e-05
     DUF3450  20 qalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeia.sleeqieeieeierelvpll 102
                  +++e +k++ +++  ++k+ +l+  +qe++ae+++l++ l +l+++ ++l+++ +++e++ia +l   +++++ +e++++ +l
  KKY18016.1  73 GLEDEISKINFEDQ--SQKMAELKSSAQEVEAEIHELETTLYELRAKHRHLTSQAKHLENSIAaKLSSYQASLQIVEKDVQRFL 154
                 55555555554443..57899****************************************97256666778888888877766 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.22
     DUF3450  25 aekavaaaaqsqkkidklddekqellaeyr...alkeeleslevyneqlerlvasqeqe 80 
                 +e+++++a   +++ +++ +e+q  l+  +   ++ +e++s e+y     +++++q+qe
  KKY18016.1 198 EEQWTEEAIILSRRRESVVREQQAFLQGSEmwsSVIKEIDSFEKYLHDSMKQLQKQHQE 256
                 56666666666666666666666666544311155566666677766666666666665 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   1.0    0.0014       3.2      61     128 ..      49     114 ..      26     117 .. 0.74
   2 ?   10.7   1.1    0.0002      0.45      26      80 ..      93     148 ..      90     157 .. 0.81
   3 ?    2.4   1.1     0.075   1.7e+02      48      91 ..     230     273 ..     207     297 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0014
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  61 ikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqk 128
                 i d  +++ +s+ ++ +++ + ++ le+ei++++    +q +++ +L++  ++ e +i++Le+   ++
  KKY18016.1  49 ILDNETNRRASALESVRAFASKKSGLEDEISKIN--FEDQSQKMAELKSSAQEVEAEIHELETTLYEL 114
                 3444444555555567888888999998888775..68999*********************987665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0002
                 CCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHH CS
   Fib_alpha  26 llkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdn.dnvik 80 
                 l++  ++v+ ++++le +l e++ ++++  +  k++++s+++k +s++ + + v k
  KKY18016.1  93 LKSSAQEVEAEIHELETTLYELRAKHRHLTSQAKHLENSIAAKLSSYQASlQIVEK 148
                 667789999********************************999999976333333 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.075
                 CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC CS
   Fib_alpha  48 snstkeaeelvkeikdslrekqkskkdndnvikksskeleeeil 91 
                 s+  ke+++  k+++ds+++ qk++++     ++s ++l+++i+
  KKY18016.1 230 SSVIKEIDSFEKYLHDSMKQLQKQHQEPLISDEESPQNLKTDIA 273
                 55567778888888888888888888644444444555553332 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.7   3.8e+03       7      33 ..      52      81 ..      48      84 .. 0.50
   2 ?    7.8   1.5     0.002       4.4       5      38 ..      74     112 ..      70     117 .. 0.83
   3 ?   -0.1   0.0      0.56   1.3e+03      11      31 ..     131     151 ..     124     154 .. 0.68
   4 ?   -3.7   0.0       7.8   1.7e+04      14      25 ..     282     293 ..     277     296 .. 0.54

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.7
   FlaC_arch  7 nklsklsteletvkk...eneelsksveel 33
                n+ ++  + le+v++   + + l++++ ++
  KKY18016.1 52 NETNRRASALESVRAfasKKSGLEDEISKI 81
                555666666666664111334455555554 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.002
   FlaC_arch   5 lEnklsklst.....eletvkkeneelsksveelkenVk 38 
                 lE ++sk+       +++ +k++ +e++ +++el+ +  
  KKY18016.1  74 LEDEISKINFedqsqKMAELKSSAQEVEAEIHELETTLY 112
                 788888887777777999999999999999999998875 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.56
   FlaC_arch  11 klsteletvkkeneelsksve 31 
                 ++  +l++ +++++ ++k+v+
  KKY18016.1 131 SIAAKLSSYQASLQIVEKDVQ 151
                 445577777777777777775 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 7.8
   FlaC_arch  14 teletvkkenee 25 
                  ++++++++++e
  KKY18016.1 282 LTITSLESNFNE 293
                 455555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1911  (0.106587); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 2966.03
//
Query:       KKY18017.1  [L=498]
Description: putative mucin-desulfating sulfatase (n-acetylglucosamine-6-sulfatase) [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-58  198.7   0.0    1.8e-58  198.4   0.0    1.1  1  Sulfatase     Sulfatase
    2.4e-20   72.7   4.9    1.4e-19   70.3   4.9    2.1  1  DUF4976       Domain of unknown function (DUF4976)
    7.9e-08   32.3   1.8    1.3e-06   28.2   1.8    2.5  1  Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosp
     0.0095   16.7   0.0      0.019   15.7   0.0    1.5  1  Sulfatase_C   C-terminal region of aryl-sulfatase


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.4   0.0     4e-62   1.8e-58       7     308 ..       1     373 [.       1     374 [. 0.89

  Alignments for each domain:
  == domain 1  score: 198.4 bits;  conditional E-value: 4e-62
                 EESSE-TTGSGGGTTTSCSSHHHHHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTTHHCTTTS-HHHHHHHHTT-EEEEEEES-SC CS
   Sulfatase   7 laddlgagdlglyggktattpnldrlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgggglpqteatLpellkeaGYntaaigkwhlg 105
                 +add  ++++++yg  +++tpnldr+a+ g++f+  y++ + c+psraa+ltg  +h +gv +      +++++  +++++ l+  GY+ta++gkwhlg
  KKY18017.1   1 MADDHASKSISCYGAGINHTPNLDRIAQDGMKFNHCYVTNSICTPSRAAILTGTHNHINGVMTLD----SKINKYLPNVAKHLRTGGYQTAMVGKWHLG 95 
                 799**9******************************************************88887....9***************************** PP

                 CSGGGSHHCCTTTSEEEETSSSCHHTCCCCCCCCCECTCCCTTTTCSHHHHHHHHHHHHHHCCC.TSSEEEEEEE-TTSS..............STCTC CS
   Sulfatase 106 wssrqsvyknrgfdrflgfptgsaalkdpekseyngevlrvppeggysddrlldealefllarn.dkpfflylatlapHa..............ppeap 189
                   +        gfd ++++ +g+  + dp++ e+ g    ++ e gy +d+++++ l++++ar+ ++pffl+ +  apH               p   p
  KKY18017.1  96 EGPAHE---PTGFD-YWSVVPGQGSYHDPDFIEPSG----WKVESGYATDIITNKSLDWIKARDkQRPFFLMCHHKAPHRswecdekhkhfykdPIRLP 186
                 998887...68***.677788899999999766654....35799***************99999**************96666665544333333333 PP

                 GGHTCCGSTTTTCCCCCCH................................................................................ CS
   Sulfatase 190 deyakkyatffddgseaar................................................................................ 208
                 d + + y++         r                                                                                
  KKY18017.1 187 DTFTDDYKN---------Rakaakvakmrvaedltygdlglaqpdggssvgrklfespriserkipapddvskmklidkddgtvftfqskielaefkfq 276
                 333333333.........034555677789999999999************************************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHC.EEECSEEEGGGHHHHHHHH CS
   Sulfatase 209 qlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekap.rvseelvshiDlfptildl 306
                 ++++ yl+++ ++Dd++g +l+ L+++gl+++t+v++tSD g  l+e    + +  +   ye++++ P+l+++p+e++p  v + ++ ++D++pt+ld 
  KKY18017.1 277 RYMQRYLRTIQSIDDNVGILLDFLDQEGLSEDTIVIYTSDQGFFLGE----HGWFDKRFLYEESFQMPFLIRYPKEIKPsSVCDDIICNVDFAPTFLDF 371
                 *********************************************66....6777777*********************99*****************9 PP

                 TT CS
   Sulfatase 307 ag 308
                 a+
  KKY18017.1 372 AN 373
                 86 PP

>> DUF4976  Domain of unknown function (DUF4976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   4.9     3e-23   1.4e-19       1     101 [.     376     489 ..     376     491 .. 0.86

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 3e-23
     DUF4976   1 ipadmqGksllpllkgkkkkewrkalyYhyyeyPa.ehavkrhygvrteryklihfykd............idewelyDlkkDpkelknlyddpeyeev 86 
                 ip+ mqG s+++ll+g ++++w++ +y +y+ +    h++  hyg+r+ rykli +y++            ++ewel+D ++Dp el n y+dp+y++v
  KKY18017.1 376 IPNYMQGVSFRKLLQGSTPEDWQQVAYHRYWMHRDpIHEAYAHYGIRDLRYKLIYWYNEdfgldgtrpggqEKEWELFDCEEDPLELFNCYQDPKYKDV 474
                 699***************************9875527********************85333333333333689************************* PP

     DUF4976  87 vkelkkkleelrkky 101
                 v+++++ le++ +++
  KKY18017.1 475 VARMTRLLEDKMADI 489
                 ******999887765 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   1.8     3e-10   1.3e-06      19     234 ..      18     319 ..      13     340 .. 0.71

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 3e-10
                   STSHHHHHHHHHSEEESEEE-SSS-SHHHHHHHHHHSS-HHHHS--SSSEEETTTTEEEEEETTTTGG........GGGCTT.....S-........ CS
  Phosphodiest  19 ellpnlaaLakegvsapnlrpvfPtlTfpnhaslvTGlyPgeHGivgNtfydrktgeyvvfvtededa........prwwqg.....ep........ 94 
                   +++pnl+++a+ g ++  +  v +++  p+ a+++TG++   +G+     +d+k ++y++ v ++ ++             +     +p        
    KKY18017.1  18 NHTPNLDRIAQDGMKFN-HCYVTNSICTPSRAAILTGTHNHINGVMT---LDSKINKYLPNVAKHLRTggyqtamvG----KwhlgeGPaheptgfd 106
                   69***************.999**************************...********9999999997888755552....1333344422224444 PP

                   HHHHHHHTH.................TTCEEEESETTTTSEBTTCT.SC.....................TBHHSBTCT.CSTTSCHHH.HHHHHHH CS
  Phosphodiest  95 iwdtaakar.................glkaaalfwpgsevdystyyylvs....................etppryleddfnakvpled.kvdkavl 153
                    w+++  +                  g++++                                        ++ + +++ ++ ++++ +  +d  +l
    KKY18017.1 107 YWSVVPGQGsyhdpdfiepsgwkvesGYATD------------------IitnksldwikardkqrpfflMCHHKAPHRSWECDEKHKHfYKDPIRL 185
                   4444444423333333333322222233333..................233333344444444456677666666666777777777755556677 PP

                   HHHHHCHTHSHHHHHCT......SSE...SEEEEEECCCHHHHHHH-TTSHH............................................. CS
  Phosphodiest 154 qtwldaafakvvlekel......ekp...dlllvyleetDtvgHkfGpdspe............................................. 196
                   ++ ++++ ++++ +++       e+    dl l   ++  +vg k+  +sp                                              
    KKY18017.1 186 PDTFTDDYKNRAKAAKVakmrvaEDLtygDLGLAQPDGGSSVGRKL-FESPRiserkipapddvskmklidkddgtvftfqskielaefkfqrymqr 281
                   7777766665444433366655533323455555555555677777.5666677777777888888888888889********************** PP

                   HHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES--- CS
  Phosphodiest 197 vedalrrvDkaigdLlealderglsaetniilvSDHGm 234
                    + +++++D+++g Ll+ ld++gls++t +i +SD G+
    KKY18017.1 282 YLRTIQSIDDNVGILLDFLDQEGLSEDTIVIYTSDQGF 319
                   *************************************8 PP

>> Sulfatase_C  C-terminal region of aryl-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.2e-06     0.019      17      98 ..     421     493 ..     403     498 .] 0.83

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.2e-06
                  EEETTEEEECEE--GCGTT-GGGTTTSSSTT-EEECCEEEEETTT-TT--S-TTSTTCCHHHHHHHHHHHHHHHCCC----- CS
  Sulfatase_C  17 vRlgkyKahfvtpsfdpegaegcygsecvekvtehdpPllFdlerDpsEkyplsaespeykevlkeikkaveehkktlkpvp 98 
                  +R  +yK+ ++      +++ g +g++   +  + ++  lFd e+Dp E ++  + +p+yk+v++++++++e+  +++  vp
   KKY18017.1 421 IRDLRYKLIYWY-----NEDFGLDGTR---PGGQEKEWELFDCEEDPLELFNCYQ-DPKYKDVVARMTRLLEDKMADIGDVP 493
                  566679999999.....5567777777...677778889**************95.7***************9999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3199.50
//
Query:       KKY18018.1  [L=840]
Description: hypothetical protein UCRPC4_g05221 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
        4.8    7.4  19.9        5.4    7.2   0.8    4.0  3  COG5         Golgi transport complex subunit 5


Domain annotation for each model (and alignments):
>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   3.3    0.0016        29      47     113 ..     500     569 ..     492     583 .. 0.79
   2 ?    4.2   2.0    0.0025        45      37      94 ..     589     646 ..     574     663 .. 0.84
   3 ?    7.2   0.8    0.0003       5.4      45     100 ..     668     723 ..     664     734 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0016
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXX-TTHHHHHHHHHHHHHHHHHH CS
        COG5  47 krlrqlitsnhleLlehlskskslssvlselksslesLsas...yerlkskvlepyeeaeklqsalkrlh 113
                 ++ r+l  +    Ll+ ++ +++ +++ ++++s++e+L +s   ++ l+++v+e+ e  + l++al + +
  KKY18018.1 500 EQHRSLKGNFDHALLSLADANQKIRDLEETVDSNVEELLESrmrVQELEREVVEKEETSKYLREALDKYR 569
                 555555555667899***********************8872225557899****999999999998866 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0025
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-T CS
        COG5  37 rlnydiqeldkrlrqlitsnhleLlehlskskslssvlselksslesLsasyerlksk 94 
                 +++ + +++++ +++ + +  +eL+++ +++ s++++  + k +l++L+ s++ ++++
  KKY18018.1 589 KIQAAQEHVQNAMEEATGDLRNELTAEEQRRHSAEELSAQRKARLDELQHSFDLVSQH 646
                 6777788899999999999999999999999999999999999999999999988876 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0003
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TTHHHHH CS
        COG5  45 ldkrlrqlitsnhleLlehlskskslssvlselksslesLsasyerlkskvlepye 100
                 l+kr+++   +++ +L +  +k++ ls  ls  + ++++L+as ++l+s ++    
  KKY18018.1 668 LRKRIHESGEQHQVHLGSLNTKIADLSTALSAARDEVDRLKASKDKLESRLVAELG 723
                 789**********************************************9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2273  (0.126778); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        43  (0.00239835); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.41u 0.43s 00:00:01.84 Elapsed: 00:00:00.66
# Mc/sec: 3818.87
//
Query:       KKY18019.1  [L=237]
Description: putative short chain dehydrogenase reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-38  130.4   0.0    7.5e-38  129.9   0.0    1.1  1  adh_short        short chain dehydrogenase
    6.7e-30  104.4   0.0    8.2e-30  104.1   0.0    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    7.5e-11   42.3   0.0    8.9e-11   42.0   0.0    1.1  1  KR               KR domain
      0.003   17.0   0.0     0.0041   16.6   0.0    1.1  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
  ------ inclusion threshold ------
      0.011   15.3   0.0      0.015   14.8   0.0    1.5  1  Epimerase        NAD dependent epimerase/dehydratase family
      0.024   14.4   0.2      0.053   13.3   0.2    1.5  1  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 
       0.03   13.4   0.0       0.04   13.0   0.0    1.1  1  RmlD_sub_bind    RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.9   0.0   2.9e-41   7.5e-38       1     187 [.      30     226 ..      30     232 .. 0.89

  Alignments for each domain:
  == domain 1  score: 129.9 bits;  conditional E-value: 2.9e-41
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCH.....HHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHH.SSESEEEE---SS--S CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrse.....ekleevakelkee.gakalaiqvDvtdreevealvekavkkl.gkldvLvnNAGitgsg 91 
                 k+v++tGas+GIG a+a  +ak+Ga+++   +rs+     + l+ +a + ++  + +++++q+Dvtd+++ve++ ++  ++   +ld+LvnNAG    +
  KKY18019.1  30 KTVFITGASKGIGSALALSYAKAGASTIGlGARSPltefpRILRSAAMHAGRSiEPRVFVYQMDVTDASSVENAAKRFTQDAeTHLDILVNNAGYLSWN 128
                 79**************************94444432111133566677777778999********************9999989***********99** PP

                 SGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTE..EEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHH CS
   adh_short  92 pfselseeewervievNltgvflltravlpamlkqssG..rIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdma 187
                 ++ + + ++w   +evN++gv+l+t+ +lp ml + +   ++vnvsSv +++  ag++ Y +sK av  lt+ +  e+a++g+   +v+PG v T+m 
  KKY18019.1 129 TITDSDPADWWMNYEVNVKGVYLCTKYFLPIMLHHPNSlkTVVNVSSVGAHNIAAGGSGYQSSKLAVCRLTEFIGVEYAEQGVLAYSVHPGSVPTQMG 226
                 *********************************55554338*******************************************************96 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.0   3.2e-33   8.2e-30       1     183 [.      36     230 ..      36     237 .] 0.87

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 3.2e-33
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH...HHHHHHHHHHTTSE....E..EE--TTSHHHHHHHHHHHHHHH.SSEEEEEE-----EGCSS-G CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea...kkrveelaeelgae....v..lecDVtdeeqvealveevvekf.gklDilvnnagiapklkgpf 87 
                   Ga +gIG a+A ++a++Ga+ +   ++  +    + ++++a   g++    v  +++DVtd ++ve+++++ +++   +lDilvnnag+     + +
    KKY18019.1  36 GASKGIGSALALSYAKAGASTIGLGARSPLtefPRILRSAAMHAGRSieprVfvYQMDVTDASSVENAAKRFTQDAeTHLDILVNNAGYLSW--NTI 130
                   899*****************9988888777432233444444444332223367******************9999899*************..*** PP

                   GGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC....CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGG CS
  adh_short_C2  88 letsreefdraldvnlyslfllakaalplmkeg....gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaas 180
                   ++ + +++    +vn+++++l++k++lp+m ++      +vn+ssvga+ + ++ + y+ +K a+  lt  + ve++++g+   +v+pg + T++ s
    KKY18019.1 131 TDSDPADWWMNYEVNVKGVYLCTKYFLPIMLHHpnslKTVVNVSSVGAHNIAAGGSGYQSSKLAVCRLTEFIGVEYAEQGVLAYSVHPGSVPTQMGS 227
                   ****************************77666678999********************************************************88 PP

                   GST CS
  adh_short_C2 181 gik 183
                    ++
    KKY18019.1 228 ILT 230
                   665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   3.5e-14   8.9e-11       2     151 ..      31     190 ..      30     216 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 3.5e-14
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS.....--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS.S---EEEE--------- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsa...aadedskaliaelealgaevevvaaDvsdkdavealleeikaee.ppikGvihaAgvlrdkl 96 
                 t++itG+  g+G +la   a+ ga+++ l +Rs+    ++   +a +++ ++ + +v v+++Dv+d+++ve++ +++++++   +   ++ Ag l  ++
  KKY18019.1  31 TVFITGASKGIGSALALSYAKAGASTIGLGARSPlteFPRILRSAAMHAGRSIEPRVFVYQMDVTDASSVENAAKRFTQDAeTHLDILVNNAGYLSWNT 129
                 679******************************64442233334566666677779**********************99999**************** PP

                 TTT--HHHHHHHHTTTTHHHHHHHHHTTT......S--SEEEEEEEHHHHH--TT-HHHHH CS
          KR  97 leemtaedleqvlapKvkGawnLhelled......esldffvlfSSiagllgsagqanYaa 151
                 +++ + +d+   ++  vkG+    +++ +      +sl+ +v +SS+++   +ag + Y++
  KKY18019.1 130 ITDSDPADWWMNYEVNVKGVYLCTKYFLPimlhhpNSLKTVVNVSSVGAHNIAAGGSGYQS 190
                 **********************999998888888899**********99887777777765 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.6e-06    0.0041       1      82 [.      33     115 ..      33     119 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.6e-06
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHH.HCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE- CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgrie.hlakdpkeeleenlklhkgDltDssslerllaevqpdevynL 82 
                    +iTG +  iGs la    + g   +g+  rs ++++ ri  + a +   ++e++++++++D+tD+ss+e++ ++   d+  +L
     KKY18019.1  33 FITGASKGIGSALALSYAKAGASTIGLGARSPLTEFPRILrSAAMHAGRSIEPRVFVYQMDVTDASSVENAAKRFTQDAETHL 115
                    59999999***************************999861555667788999*****************9999888876666 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   5.9e-06     0.015       1      71 [.      32     115 ..      32     217 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.9e-06
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.............EEEE--TT-HHHHHHHHHHHT-SEEEE- CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.............elveldltdrsalerlfkeeqpdavihl 71 
                 +++tGa+  iGsal+   +++g   igl  +s   ++ r+ +               ++++d+td+s++e++ k++  da  hl
  KKY18019.1  32 VFITGASKGIGSALALSYAKAGASTIGLGARSPLTEFPRILRSaamhagrsieprvFVYQMDVTDASSVENAAKRFTQDAETHL 115
                 68*****************************888888777766899*********999*********99998887766665554 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   2.1e-05     0.053      39      71 ..      28      59 ..       8      66 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.1e-05
                     .-SEEEEESTSSHHHHHHHHHHHHSS--EEEEE CS
  Eno-Rase_NADH_b 39 gpkkvLviGaStGYGLAsriaaafgagadtigV 71
                     + k+v + GaS G G A  ++ a + ga+tig 
       KKY18019.1 28 TGKTVFITGASKGIGSALALSYAKA-GASTIGL 59
                     4699*********998877777766.*****96 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.5e-05      0.04       2      81 ..      31     148 ..      30     155 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.5e-05
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT............................T--TTSHHHHHHHH......HHH--SEEEE------ CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre............................eldltdaeavaell......keakpdvvvnaAAyta 63 
                    ++ +tGa+  +Gs+La + a++g+++++l+ +                            ++d+tda++v+++       +e++ d++vn A y  
     KKY18019.1  31 TVFITGASKGIGSALALSYAKAGASTIGLGARspltefprilrsaamhagrsieprvfvyQMDVTDASSVENAAkrftqdAETHLDILVNNAGYLS 126
                    589**************************7777**************************************9997777666777889*******99 PP

                    HHHHHHSHHH....HHHHHTHH CS
  RmlD_sub_bind  64 vDkaEseeea....ayavnaea 81 
                    +    +   a    +y+vn+++
     KKY18019.1 127 WNTITDSDPAdwwmNYEVNVKG 148
                    8876554332012245666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.51
# Mc/sec: 1406.69
//
Query:       KKY18020.1  [L=285]
Description: putative gpr fun34 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-89  296.7  16.5    9.8e-89  296.4  16.5    1.1  1  Gpr1_Fun34_YaaH  GPR1/FUN34/yaaH family


Domain annotation for each model (and alignments):
>> Gpr1_Fun34_YaaH  GPR1/FUN34/yaaH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.4  16.5   5.5e-93   9.8e-89       1     207 []      55     270 ..      55     270 .. 0.98

  Alignments for each domain:
  == domain 1  score: 296.4 bits;  conditional E-value: 5.5e-93
  Gpr1_Fun34_YaaH   1 fggtlnpg.lapvpkrkfaNPaPlgllafalttfvlslvnlgargitepnvvvglalfyGGlvqllaGiwefavgntFgatalssYGgFwlsya 93 
                      fgg+++pg ++pv  rk++NPaPlgl+afalttfvlsl+n+gar++t+p++v+++a++yGGlvqllaG+we+avgntFgatalssYGgFwls+a
       KKY18020.1  55 FGGEFQPGlYKPVAARKLGNPAPLGLSAFALTTFVLSLINVGARDLTSPSLVIAIAYGYGGLVQLLAGMWEMAVGNTFGATALSSYGGFWLSFA 148
                      89******************************************************************************************** PP

  Gpr1_Fun34_YaaH  94 ailip.gfgilaaY.eedeeelnnalglyllgwfiftfllllatlrstvalfllfffldltflllaigeltgsak......vlkAggvfgiiaa 179
                      +il+p gf+i ++  ++ ++ +++ +glyl+gwfiftf+ll++tlrstva+fllfffldl+flll+ig+l ++a       ++kAgg+fg++aa
       KKY18020.1 149 IILTPgGFEIESTLtADGTSPFYDSFGLYLMGWFIFTFILLVCTLRSTVAFFLLFFFLDLAFLLLGIGYLHRDAAgspnppIIKAGGYFGLFAA 242
                      *****99*******7777889*************************************************88888899999************* PP

  Gpr1_Fun34_YaaH 180 flawYnalaglatkensyftlpviplpk 207
                      f+awYnalag+a+++ns+f++pv+++p+
       KKY18020.1 243 FMAWYNALAGIADNSNSFFIIPVAHFPW 270
                      ***************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1987.66
//
Query:       KKY18021.1  [L=459]
Description: putative threonine biosynthetic [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-60  204.6   0.5    2.1e-60  204.6   0.5    1.5  2  PALP            Pyridoxal-phosphate dependent enzyme
    1.3e-37  127.5   0.0    6.3e-21   74.0   0.0    2.4  2  Thr_dehydrat_C  C-terminal regulatory domain of Threonine deh
  ------ inclusion threshold ------
       0.27   11.7   0.7       0.68   10.5   0.1    2.0  2  CPSase_C        Carbamoyl phosphate synthetase C-terminal dom


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.6   0.5   3.5e-64   2.1e-60      55     278 ..      10     234 ..       1     251 [. 0.95
   2 ?   -2.8   0.0      0.55   3.3e+03     208     247 ..     313     358 ..     297     362 .. 0.59

  Alignments for each domain:
  == domain 1  score: 204.6 bits;  conditional E-value: 3.5e-64
                 TSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHH CS
        PALP  55 aktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGaevvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileq 153
                  k+v+++s+GNh++++A+ a++l++++tiv+p+++++ k +   +lG  vv+ g d+d+a++ +++l++  +g +++++fd+p+vi+g+gtig+Ei++q
  KKY18021.1  10 WKGVIACSAGNHAQGVAFSARHLKIPATIVMPSGTPAIKHQNVSRLGGAVVLHGADFDAAKEECHRLEKL-HGLTNIPPFDDPYVIAGQGTIGMEIMRQ 107
                 589*******************************************************************.**************************99 PP

                 TT.TTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTCCS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHH CS
        PALP 154 lg.gkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalarslragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealea 251
                    ++++a+++++GgGgliaGi+ ++k   p+v++igve++ ++a+a+sl++g+rv +p+   +adg av+ ++e++f+l+ + vde++tvs++e+++a
  KKY18021.1 108 ASiQNLEAIFCCIGGGGLIAGIGVYVKRIAPHVKIIGVEATDASAMAQSLQKGSRVLLPEVGLFADGAAVKFVGEENFRLCSEVVDEVITVSTDEICAA 206
                 9999*********************************************************************************************** PP

                 HHHHHHHHSB-B-HHHHHHHHHH.HHHH CS
        PALP 252 mrllarregivvepssaaalaal.klre 278
                 ++ + ++++ +vep++a +la+l k ++
  KKY18021.1 207 IKDVFEDTRSIVEPAGALSLAGLkKYVN 234
                 ***********************65554 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.55
                 SS..B.SSS.CCSTCSCGTTCCHHHH......SEEEEEEEEEEHHH CS
        PALP 208 vtvpvsdtiadglavgspselafell......drlvdeivtvsdee 247
                 +++p++ +i+ g++v s+s++  el       ++   +++ +sd+e
  KKY18021.1 313 QNTPTTAHIIMGIGVASASTREAELSslfnrlEANSMRAIDISDDE 358
                 4566668888889888555554444422322233333666666666 PP

>> Thr_dehydrat_C  C-terminal regulatory domain of Threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   1.2e-17   7.1e-14       1      91 []     264     364 ..     264     364 .. 0.86
   2 !   74.0   0.0     1e-24   6.3e-21       2      91 .]     369     457 ..     368     457 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 1.2e-17
                     HHHTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX......XXX.XXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXX CS
  Thr_dehydrat_C   1 eraevgegleallavefpeqpGaLkkFlellggrndiTlfeYrk......age.kngkvLvgvevsqae....eldelierleklgykvedlskn 84 
                     era +ge +ealla e+pe++G++ + ++ ++++  +T+f+Yr       +++  ++++++g+ v +a+    el +l +rle++ ++  d s++
      KKY18021.1 264 ERAGLGERKEALLALEIPERAGSFAQLIDSVLPQS-VTEFSYRHastsgsQNTpTTAHIIMGIGVASAStreaELSSLFNRLEANSMRAIDISDD 357
                     899********************************.*******7222222456779*********8765211157899***************** PP

                     XXXXXXX CS
  Thr_dehydrat_C  85 ellkehl 91 
                     el+k+h+
      KKY18021.1 358 ELAKTHI 364
                     ****997 PP

  == domain 2  score: 74.0 bits;  conditional E-value: 1e-24
                     HHTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Thr_dehydrat_C   2 raevgegleallavefpeqpGaLkkFlellggrndiTlfeYrkagekngkvLvgvevsqaeeldelierleklgykvedlsknellkehl 91 
                     ++ ++ + e+l+++efpe+pGaL kFl+ + + ++i+lf+Yr+ g + g++L+g+e +++++  el+  l++l y +++ ++n+++k++l
      KKY18021.1 369 GGRSNVSSERLYMFEFPERPGALAKFLSVMRPDQNISLFHYRNYGGDVGRILAGIECPDEKK-SELEGFLRELRYPFKECTDNTMYKTFL 457
                     5678899***************************************************8888.************************997 PP

>> CPSase_C  Carbamoyl phosphate synthetase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1         3   1.8e+04       7      11 ..     302     306 ..     298     308 .. 0.74
   2 ?   10.5   0.1   0.00011      0.68       5      12 ..     405     412 ..     402     414 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3
    CPSase_C   7 FHYRq 11 
                 F YR 
  KKY18021.1 302 FSYRH 306
                 89996 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00011
    CPSase_C   5 sLFHYRqY 12 
                 sLFHYR Y
  KKY18021.1 405 SLFHYRNY 412
                 9******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.51
# Mc/sec: 2722.55
//
Query:       KKY18022.1  [L=902]
Description: hypothetical protein UCRPC4_g05225 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (902 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.48
# Mc/sec: 5699.90
//
Query:       KKY18023.1  [L=490]
Description: putative c6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00058   19.9   2.9    0.00058   19.9   2.9    1.7  2  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   2.9   3.2e-08   0.00058       9      37 ..       2      32 ..       1      35 [. 0.84
   2 ?   -2.2   0.2      0.26   4.7e+03       9      14 ..     351     356 ..     350     358 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.2e-08
                CT---ST.SSSS..-HHHHHCTHHHCCCCTCC CS
     Zn_clus  9 kKvKCda.kkPa..CsnCkklnleCtfysess 37
                kK +Cd  + P   Cs+C++lnl+C+ +++  
  KKY18023.1  2 KKLRCDVvQDPFttCSRCRRLNLDCK-IENNF 32
                8******9888788***********9.66554 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.26
                 CT---S CS
     Zn_clus   9 kKvKCd 14 
                  KvKC 
  KKY18023.1 351 LKVKCR 356
                 699996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      597  (0.033298); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.52
# Mc/sec: 2827.95
//
Query:       KKY18024.1  [L=503]
Description: hypothetical protein UCRPC4_g05227 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0022   17.9   0.6     0.0055   16.6   0.6    1.6  1  TMEM52    Transmembrane 52
  ------ inclusion threshold ------
      0.045   13.7   0.2      0.078   12.9   0.2    1.3  1  DsbD_2    Cytochrome C biogenesis protein transmembrane regio


Domain annotation for each model (and alignments):
>> TMEM52  Transmembrane 52
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.6   6.1e-07    0.0055      20      58 ..     152     195 ..     141     204 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6.1e-07
      TMEM52  20 yvwLilvivll..lLlCglt...asCvrfCclrkqqkaeeespp 58 
                 ++ L ++i+ l  +LlCgl+     C+r+C  r++++++ +++ 
  KKY18024.1 152 FLTLAVLIGGLcgFLLCGLLyalIACIRCCRTRRRARKQRKLEE 195
                 67899999998778****9632257***9999999999987766 PP

>> DsbD_2  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   8.7e-06     0.078     102     141 ..     138     176 ..     120     179 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.7e-06
      DsbD_2 102 kllsrllkklakklkslasalllGllnGllpCglvysall 141
                 + +s+++  l ++ + l  a+l+G l G+l Cgl+y+ ++
  KKY18024.1 138 ANMSSRFDDLRNR-QFLTLAVLIGGLCGFLLCGLLYALIA 176
                 4567777777776.788889****************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       980  (0.05466); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.48
# Mc/sec: 3152.66
//
Query:       KKY18025.1  [L=327]
Description: hypothetical protein UCRPC4_g05228 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-05   22.8   0.0    0.00046   20.4   0.1    2.1  2  SesA            N-terminal domain on NACHT_NTPase and P-loop 
  ------ inclusion threshold ------
       0.14   12.0   0.1         14    5.7   0.1    3.1  3  L_biotic_typeA  Type-A lantibiotic


Domain annotation for each model (and alignments):
>> SesA  N-terminal domain on NACHT_NTPase and P-loop NTPases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   5.1e-08   0.00046      26     114 ..      53     144 ..      24     159 .. 0.79
   2 ?   -0.2   0.0      0.12   1.1e+03      39      80 ..     264     299 ..     254     326 .. 0.60

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 5.1e-08
        SesA  26 eaFrevgkrLplvqetLedaksqlesskldedtesa..ikpvlesckekatkleeifekvapapadsrl.eryrkavrslgkgskVEtLmkg 114
                  ++++++k + l++ +L+++ ++l+s ++  ++e+   ++++  +c+   ++++e+++kv+  + d +   ++++ ++   k+++V  L  +
  KKY18025.1  53 VEIHTISKGVTLFSLMLKQVGQHLQSPQSVHSSEAIetAQTITHECQLVFDEISEMLDKVQTRKRDGTPsPTIQQRFKWCFKKHRVTYLLAQ 144
                 5789**********************999888777677**********************88777755556666666666667777666554 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.12
        SesA  39 qetLedaksqlesskldedtesaikpvlesckekatkleeif 80 
                  +tL+++k++ ++  + +      ++v++   +++t++ +i+
  KKY18025.1 264 DQTLNRIKDSPRDMIQVS------ESVIDPLLQRWTRCYDIL 299
                 455666665555554444......345555555555555555 PP

>> L_biotic_typeA  Type-A lantibiotic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.11     1e+03      31      43 ..      54      66 ..      42      70 .. 0.70
   2 ?    5.7   0.1    0.0015        14      33      41 ..      92     100 ..      88     102 .. 0.87
   3 ?    1.7   0.0     0.026   2.3e+02       7      23 ..     250     266 ..     246     267 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.11
  L_biotic_typeA 31 vikTiSheCrmnS 43
                     i+TiS+ + + S
      KKY18025.1 54 EIHTISKGVTLFS 66
                    399***9887766 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0015
  L_biotic_typeA  33 kTiSheCrm 41 
                     +Ti+heC++
      KKY18025.1  92 QTITHECQL 100
                     8******86 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.026
  L_biotic_typeA   7 ealnslqevseeELdqi 23 
                      al+ l +vs+ ELdq 
      KKY18025.1 250 SALIRLPTVSLGELDQT 266
                     5788899********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       958  (0.053433); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 2043.79
//
Query:       KKY18026.1  [L=385]
Description: putative para-nitrobenzyl esterase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-24   84.8   0.0    1.8e-17   63.4   0.0    2.0  2  COesterase  Carboxylesterase family


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0     1e-21   1.8e-17      13     122 ..      15     125 ..       7     136 .. 0.85
   2 !   19.6   0.0   1.9e-08   0.00034     280     468 ..     143     324 ..     125     340 .. 0.68

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 1e-21
                 EEEEEEESTCSEEEEEEEEESSB---GGGTTS--BE..----SSEEECBS---BESEECSSSSSCGHHCHHH........BES---EEEEEEESSSSST CS
  COesterase  13 rGkrvklksekevdaFlGiPYAepPvgelRFkkPep..aepwtgvrdAtkfspaCpqnaeksekeekeleaw........vsEDCLyLnvytPkekkea 101
                 rG   +      v+ + Gi+YA+    e++F +P p   ++  +v+dAtk +p+ pq    ++ e+   +++         + DCL Lnv+tP++ +  
  KKY18026.1  15 RGVVDD-----GVTRYFGIKYATL---EHKFDAPHPvdRSTTADVIDATKAGPQAPQPPIGIDIEFGFIQQKldkppleiSETDCLHLNVFTPSDIPGI 105
                 444444.....89*********99...9********64445556***************9999999877777899****7778**********998877 PP

                 TSSEEEEEEE--STTTS-BGC CS
  COesterase 102 kkklPVlVwihGggfqtgsas 122
                  +  PVlVwihGgg+ +g+  
  KKY18026.1 106 GNL-PVLVWIHGGGYAIGQRA 125
                 777.************99865 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 1.9e-08
                 C-SSS-B--SSSSSS.-HHHHHHCGC....CSEEEEEEETTTTHHHHCCHSTTTSSSSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSTTTSSTC CS
  COesterase 280 lvsfaPvvdgdflpe.kPeellkseg....kvplliGvnkdegllflaylldkeksvkkkeeklsesllkdelyleaekkeelseaikeeytdeadrdd 373
                 +v++  v d+d++pe    + l s+       +lliG  + +g+++ ++ l + ++          +++   +     +k e+++ai+  y  ++++  
  KKY18026.1 143 NVPMLAVQDNDLIPEvLEFSKLPSAVsgswCLELLIGDCSLDGMILGEMALGSRSKG--I-----GKAFAASVRSSFTQKPEVADAILRSYDIDDSSPV 234
                 566666667777664333333333224455778888888888888888777763221..1.....22222222222233789*********96666666 PP

                 HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTT-SEEEEEEE--STTSSSTTTGSSBTTTTHHHHTTGGGTSGCSS-HHHHHHHHHHHHHHHHHHH CS
  COesterase 374 aeksrkallelltdvlfkapvlrtaklhasrgspvYlYsfdyrnssskkpkwmgvvhgdeleyvfglpllekeeftkedeklsrkmmtywtnFak 468
                 ++k   ++ ++++++ f+a + + a+ +   + pvY Y f+ +n    +p   + + ++ l  vf l+ ++++  ++e+++ +++m + + +Fa+
  KKY18026.1 235 DDKDWVSICKFASEIAFEATSTAWAETW-LGHGPVYRYFFNEQN---PWPGKYQGHATHILDAVFFLQNFNEF-LNEEQKTTAKRMASDFISFAN 324
                 666667889*******************.9**********9988...55544444444444444444444444.556688899**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.51
# Mc/sec: 2271.55
//
Query:       KKY18027.1  [L=429]
Description: putative deoxyribodipyrimidine photo-lyase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-38  132.7   0.0    1.8e-38  132.1   0.0    1.2  1  DNA_photolyase  DNA photolyase


Domain annotation for each model (and alignments):
>> DNA_photolyase  DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.1   0.0     1e-42   1.8e-38       1     157 [.      93     257 ..      93     272 .. 0.89

  Alignments for each domain:
  == domain 1  score: 132.1 bits;  conditional E-value: 1e-42
                     EEEEESS---STT-HHHH....HHHCTTSEEEEEEEE-HH..HHTCGS-CHHHHHHHHHHHHHHHHHHHHTT--EEEEESSHHHHHH....HHHH CS
  DNA_photolyase   1 vlvWfrrDlRlhDNpALa....aAaasgepvipvfvldpe..kahklrvgaarvdfllesLadLdeeLrelgirLvvrrgdpadvlp....elak 85 
                     v++Wf+ DlR++DN+AL+    +A++ + p+i+++ ++p+  +ah   ++a rvdf+l+sL+ L+++L++l+i+L+v +++ ++ lp    +l+k
      KKY18027.1  93 VVHWFKCDLRTRDNTALHmaseRAIRDSVPLICIYLISPQdfEAHL--TSAVRVDFILRSLRVLQADLAQLNIPLYVESVQRRKNLPgrliQLCK 185
                     79****************6555568889************555555..5*******************************95555555555**** PP

                     HCTECEEEEE---SHHHHHHHHHHHHHHHHCTSEEEEE--SSSS-HHHHHTTTSSSHSSHHHHHHCHHHHHC CS
  DNA_photolyase  86 elgasavvanreyepdererdeavkealrkagievesfddhtlvepgevktkkgkpykvFtpfrkrwlkelk 157
                     +++as++++n eye+de +r++ + + +  +g++++ ++d+++v+p ++ + +g  y++++p++++wl+ l+
      KKY18027.1 186 TWNASHLFTNVEYEVDELRREASLFRECLGSGVSFNACEDTCVVAPYTLSSLSGSQYSIYSPWYRAWLRYLN 257
                     ********************************************************************9766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3027.01
//
Query:       KKY18028.1  [L=273]
Description: putative mannosylphosphorylation protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-14   53.9   6.7    3.7e-05   24.0   0.6    3.1  3  LicD         LicD family
  ------ inclusion threshold ------
          1    9.2   3.3        2.5    8.0   3.3    1.6  1  Prion_bPrPp  Major prion protein bPrPp - N terminal


Domain annotation for each model (and alignments):
>> LicD  LicD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1   5.5e-05      0.49       7      22 ..      92     107 ..      87     109 .. 0.88
   2 !   24.0   0.6   4.1e-09   3.7e-05      24     101 ..     127     206 ..     124     218 .. 0.83
   3 !   22.3   0.0   1.3e-08   0.00012     188     227 .]     221     262 ..     204     262 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.5e-05
        LicD   7 eywLsgGTllGavRhg 22 
                 e+w+++GTllG+ +++
  KKY18028.1  92 ETWIMHGTLLGWWWNQ 107
                 79************98 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 4.1e-09
        LicD  24 fIPWDDDiDlqmprkdyerLaevfnq.lilkkedlreaekdknylenfaklldkntsiterkngngkn.........dsglyiDIfpl 101
                 ++PWD D+D+q   + +  La++ n  ++  +++l      ++  +  ++l++ n  + + +++++ n         dsgl+iDI  +
  KKY18028.1 127 ILPWDSDLDVQVSEPTMYFLAKYYNMtEF--HYEL------EGVDGGRTYLMEINPHFVNGSTKDHLNmidarwidtDSGLFIDISTV 206
                 68********************9999333..3666......3566666999999999999888888888999999**********876 PP

  == domain 3  score: 22.3 bits;  conditional E-value: 1.3e-08
        LicD 188 l..rnkeilpleelsplkkvkFegvevpipnnydkyLtelYg 227
                 l  ++++ ++ +el+pl++  Feg+ v+ip +y  +L+e+Yg
  KKY18028.1 221 LmvKDRHHYRGKELFPLRDSFFEGIHVKIPFDYSWLLEEEYG 262
                 135689***********************************8 PP

>> Prion_bPrPp  Major prion protein bPrPp - N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.3   0.00027       2.5       1      17 [.       1      17 [.       1      19 [. 0.82

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00027
  Prion_bPrPp  1 MaklqlgcWLLvLfvat 17
                 M+ ++  cWLL+L+v +
   KKY18028.1  1 MVVIRSLCWLLALLVCI 17
                 6667778********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.34s 00:00:00.87 Elapsed: 00:00:00.51
# Mc/sec: 1621.16
//
Query:       KKY18029.1  [L=366]
Description: putative c6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2607.94
//
Query:       KKY18030.1  [L=1176]
Description: putative glutamate carboxypeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-30  103.3   0.0    1.5e-29  102.5   0.0    1.4  1  TFR_dimer       Transferrin receptor-like dimerisation domain
    1.7e-29  102.8   2.0    3.3e-29  101.9   2.0    1.4  1  CDH-cyt         Cytochrome domain of cellobiose dehydrogenase
    6.9e-18   65.1   0.0    3.6e-17   62.7   0.0    2.0  2  Peptidase_M28   Peptidase family M28
    1.2e-08   35.1  10.2    1.2e-08   35.1  10.2    2.0  2  Cytochrom_B561  Eukaryotic cytochrome b561
    1.7e-07   31.1   0.0    1.4e-06   28.3   0.0    2.5  2  PA              PA domain
      3e-05   23.8   2.1    0.00011   21.9   2.1    2.0  1  DUF2427         Domain of unknown function (DUF2427)
     0.0054   16.2   0.0      0.017   14.6   0.0    1.8  2  Nicastrin       Nicastrin
  ------ inclusion threshold ------
        0.1   12.5   0.3        3.5    7.6   0.1    2.6  2  Big_2           Bacterial Ig-like domain (group 2)
       0.21   11.7   3.6        4.1    7.6   2.1    3.0  2  DUF4079         Protein of unknown function (DUF4079)
        2.7    7.9   9.8         17    5.3   9.3    2.4  2  DUF1275         Protein of unknown function (DUF1275)


Domain annotation for each model (and alignments):
>> TFR_dimer  Transferrin receptor-like dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   8.5e-33   1.5e-29       2     120 ..    1050    1175 ..    1049    1176 .] 0.91

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 8.5e-33
   TFR_dimer    2 sldpLeeaikkfkkaaeefdkwadkwed........vggaessllavrkrrkiNdklmrferafldpeglpgrpwykHvvfgpslwtgyagatFPgi 90  
                  s+++L++a+++++ +++ fd+ a+++ +        ++ +++ +l   ++rk+Nd+++++er++l+pegl+gr+++kHvvf+p++wtgyagatFPg+
  KKY18030.1 1050 SFKHLDHALDHLEAISKSFDAHAESLASqlsdslpwWKWWQKVKLLY-QIRKVNDQYKYLERQMLYPEGLDGRTFFKHVVFAPGRWTGYAGATFPGL 1145
                  89*************************98888777524455555555.455********************************************** PP

   TFR_dimer   91 rdaieegdweeaqeqisivakaiesaaelL 120 
                   ++ e+g+ ++a+++ +i+ + ++ a elL
  KKY18030.1 1146 IESFEDGNSTNAERWGNIILERLKGAIELL 1175
                  **************************9998 PP

>> CDH-cyt  Cytochrome domain of cellobiose dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9   2.0   1.9e-32   3.3e-29      14     176 ..      36     192 ..      24     194 .. 0.88

  Alignments for each domain:
  == domain 1  score: 101.9 bits;  conditional E-value: 1.9e-32
                 TT-SS-EEEEEEB-CCCTS--SEEEEEEEEE-GCS--EEEEESSSSSCTSEEEEEEEE..TTEEEEEEEEBSSSSS-EE--SS-EEEEEE.EEE-SSEE CS
     CDH-cyt  14 tdeaggftfgialPedattdatefigqlvaplsakagWaGislggsMtnnlLlvaWpn..gnevvtSfrlatgyasPevytgdakltqlsgtsvnathf 110
                 t++++++t+++++P++a  +++++  +++ap+   +gW+++++g++M+++l++va+ +  g++v++S+rl +g+++Pe y +++++++l+g+ ++++ +
  KKY18030.1  36 TETSENLTISVNVPATA--SSDDLFFYMSAPSV--QGWIAFGIGSEMKGSLIFVAYSSedGTNVTVSPRLGKGHVMPEHY-SNTTVEVLAGSGITNDTY 129
                 566899********998..899999999****8..*********************998899******************.999******99999999* PP

                 EEEEEEET-SEEEETTEEEE--TTTEEEEEEEEESS-.-BSTTSCCCB-----SEEEEEEEE--CCB CS
     CDH-cyt 111 tltfrCqgClsweqggtsgsastssnlvlgwAqskka.ptnpaspdstlsqHdngfgqfgadlsaak 176
                  + ++C++C sw+ gg+ +++s  +++++ +A+ ++  + +++s+++t++qH + +g+f+++++aa+
  KKY18030.1 130 IVQAKCSNCRSWD-GGSLDATS--TSQSMIFALGSEDnVVKSDSESATIQQHYT-YGHFTLNMKAAT 192
                 ************6.55554444..77889***955553889999999*******.********9986 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0     2e-20   3.6e-17       1     180 [.     800     986 ..     800    1002 .. 0.80
   2 ?   -0.9   0.0      0.61   1.1e+03      31      54 ..    1019    1042 ..    1010    1053 .. 0.80

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 2e-20
                    EEEEEESTTCESEEEEEEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHH...GGCCSSEEEEEEEESSCSGSSHHHHHHHH..HHCCCTTE CS
  Peptidase_M28   1 NviatlegkatdevlllgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaa...sgsrpkrgvrflffdaEEagllGSkafak..akpelkki 91 
                    Nvi+ ++g+ +de +++g H D +         GA D  sg aal e +r + +    g +p r+++f+ +d+EE+ l+GS+ +++   ++  k  
     KKY18030.1 800 NVIGIINGTIPDEAVVIGNHRDAWIA---G---GAGDPNSGSAALNEAIRSFGKaveAGYKPLRTIVFASWDGEEYNLIGSTEWVEdyLTWLDKGS 889
                    9************************5...7...9*******************999888899***********************75334456667 PP

                    EEEEEECS-SSSS.--EEEHHHHHHCHHHHHHHHHHHHHTT-TTSC.CEEEEES.STT-STTHHHH.TTT--EEEE....CTSSS-TTTTSTTSSG CS
  Peptidase_M28  92 aavlnlDmvgsgg.kellfesgdkssselekelkalakpvgraaae.dpfders.grgrsDhspfl.kagvpvldl....aetgfpevyHtprDtl 179
                     a++nlD +  ++ ++  +    k  +e++k + + +++v+ ++       ++s + + sD+++f+  ag+p l++     +t+  ++yH+  D +
     KKY18030.1 890 IAYINLDDLSGTHfSASASPLLVKALHEVTKAIPSPNQTVAGQSVYdLWGGYTStIGSGSDFTAFQdFAGIPSLSFtfgrTSTDPVYHYHSIYDSF 985
                    79999987655440444446666777777777777777776665553444455545666*******4477******99888888899999999987 PP

                    G CS
  Peptidase_M28 180 d 180
                     
     KKY18030.1 986 Y 986
                    5 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.61
                     T---TTTTHHHHHHHHHHHHHCHH CS
  Peptidase_M28   31 ifvGAdDnAsgvaalLelarvlaa 54  
                     i   A+D A+g  + Le a+++a 
     KKY18030.1 1019 INFNATDYAAGLKVYLERAKQVAI 1042
                     55569***************9985 PP

>> Cytochrom_B561  Eukaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1  10.2   6.8e-12   1.2e-08       1     130 [.     223     344 ..     223     348 .. 0.88
   2 ?   -1.4   0.0       1.3   2.4e+03      40      68 ..     357     384 ..     351     388 .. 0.64

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 6.8e-12
                     HHHHHHHHHHTHHHHHHHTHHHHS-S...-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHT--SS-SHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cytochrom_B561   1 lHpvlmviGfvllmgeaiLvyrvsstrklskktkkllHlilqllalilavvgllavfksk.nekeianlyslHswlGlvtvilfllqlvlGfvlf 94 
                     +H++lmv +fv  +  ++L++r+  +       k  +H+++q +a + +++g +  ++   +  ++++l+s H  +Gl+  il+++ql lGf+  
      KKY18030.1 223 VHAILMVGSFVGGYPMGVLLFRI--F------GKVWMHWLVQSIATLAVILGAASGIYLSvKYDKHPKLNSAHQGIGLALTILVIAQLTLGFMHH 309
                     6*********************9..6......7899**************9998866655055678***************************98 PP

                     TSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cytochrom_B561  95 llpklskklralllplHvllGlvifvlaivtallGl 130
                      +  +++k  +++ ++H++lG  + +++iv+ ++G+
      KKY18030.1 310 RIF-TKTKSPTIMGKIHRILGPSVILFGIVNGAIGF 344
                     854.444577888899***************99998 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.3
                     HHHHHHHHHHHHHHHHHHHHHHHHT--SS CS
  Cytochrom_B561  40 ilqllalilavvgllavfksknekeianl 68 
                     i+ ++a++l+++g+l++ k+k++k +  +
      KKY18030.1 357 IVLVTAVALGALGILFMKKRKQRK-KDAM 384
                     566778888888888866666653.4444 PP

>> PA  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.8   3.3e+03      41      58 ..     361     379 ..     347     399 .. 0.65
   2 !   28.3   0.0   7.6e-10   1.4e-06       1      71 [.     612     688 ..     612     701 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.8
          PA  41 nAqaaGAagviivndge.l 58 
                 +A a GA g+++  + +  
  KKY18030.1 361 TAVALGALGILFMKKRKqR 379
                 68999******99433322 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 7.6e-10
          PA   1 vtgplVyscfagygisadfe.....gvdvkGkivLvqr...tfaeKarnAqaaGAagviivndge.lgaatgasgnegep 71 
                 vt+p V   +++ g+ +dfe     +v+++Gki++ +     ++ K++ Aq+ G +g+++++d++ +g+ t+ +g+ ++p
  KKY18030.1 612 VTAPYV---YVNFGTFEDFEdliraNVTLEGKIAIAKYgkcFRGLKTKRAQELGMIGIVLYTDPQeDGEITEVNGYGTYP 688
                 799***...***************************7567777******************8888666666666666665 PP

>> DUF2427  Domain of unknown function (DUF2427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   2.1   6.4e-08   0.00011      19     101 ..     222     307 ..     204     310 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 6.4e-08
     DUF2427  19 wvHiilmtlalvvvyPvalvLslak..srwylpvqivnlvlavlglllghi....ykgstPelypnniyaklswillillavqvvlavl 101
                  vH+ilm+ ++v  yP+++ L  +     ++ +vq ++++ ++lg+++g+     y +  P l  n++++ ++  l+il+++q+ l+++
  KKY18030.1 222 AVHAILMVGSFVGGYPMGVLLFRIFgkVWMHWLVQSIATLAVILGAASGIYlsvkYDKH-PKL--NSAHQGIGLALTILVIAQLTLGFM 307
                 58****************9986654225568999***9999999998876511123333.566..9******************99986 PP

>> Nicastrin  Nicastrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   9.7e-06     0.017      19      74 ..     825     880 ..     822     897 .. 0.91
   2 ?   -3.2   0.0       2.6   4.7e+03     178     206 ..    1044    1072 ..    1036    1084 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 9.7e-06
   Nicastrin  19 slGaessvsslvallaaaealskllkdisnlkrnvlFvffnGEsydYiGSqrfvyd 74 
                 + Ga ++ s+ +al  a++++ k+ ++  +  r ++F+ ++GE y+ iGS   v d
  KKY18030.1 825 AGGAGDPNSGSAALNEAIRSFGKAVEAGYKPLRTIVFASWDGEEYNLIGSTEWVED 880
                 56999999*******************************************99987 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.6
   Nicastrin  178 dfdtefenrfyhSilDdaenvnvtyants 206 
                    +++f+ ++ +  lD+ e +   +  + 
  KKY18030.1 1044 TNSSSFSFKHLDHALDHLEAISKSFDAHA 1072
                  55566666666666666666665554443 PP

>> Big_2  Bacterial Ig-like domain (group 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0019       3.5      36      71 ..      85     123 ..      83     131 .. 0.90
   2 ?    2.0   0.0      0.11   1.9e+02      53      74 ..     359     380 ..     355     384 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0019
                 EEEEECC-SSEEEE...TCCEECCCSSEEEEEEEEETTT CS
       Big_2  36 vtwtssngsvAtVs...atGlVtavaaGkatitatskdg 71 
                 v ++s++g+ +tVs   ++G V      ++t++++++ g
  KKY18030.1  85 VAYSSEDGTNVTVSprlGKGHVMPEHYSNTTVEVLAGSG 123
                 789********************9**********99985 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.11
                 EECCCSSEEEEEEEEETTTSSE CS
       Big_2  53 lVtavaaGkatitatskdgndk 74 
                 lVtava G++ i +++k+ + k
  KKY18030.1 359 LVTAVALGALGILFMKKRKQRK 380
                 8***************994444 PP

>> DUF4079  Protein of unknown function (DUF4079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.1    0.0023       4.1      50     134 ..     252     305 ..     160     347 .. 0.54
   2 ?    1.9   0.0      0.13   2.3e+02      12      36 ..     357     394 ..     352     481 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0023
     DUF4079  50 Hvklgslllllvvlgaigglvlly.lrrgklfpssHlyaGlavvvLlalsaalvpeiqkgkstaRtlHialnvlalllfawqaitG 134
                 H+ + s+ +l v+lga+ g+ l + + ++  + s H  +Gla+++L++ ++                                + G
  KKY18030.1 252 HWLVQSIATLAVILGAASGIYLSVkYDKHPKLNSAHQGIGLALTILVIAQL--------------------------------TLG 305
                 222222223333333333332222233334566666666666666666555................................444 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.13
     DUF4079  12 lvfpllgavaylGwqtrqrrlqsk.............a 36 
                 +v++++ a + lG+ + ++r q+k             +
  KKY18030.1 357 IVLVTAVALGALGILFMKKRKQRKkdamnsvaaqnmrR 394
                 44444445577898888888888844455555554440 PP

>> DUF1275  Protein of unknown function (DUF1275)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   9.3    0.0094        17      19     108 ..     193     300 ..     186     373 .. 0.62
   2 ?   -2.5   0.0       2.3   4.2e+03      49      92 ..     956    1014 ..     940    1045 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0094
     DUF1275  19 aaggvfvsaqTGNtvllglal.aegnakaalaalvsllaFvlGaalagllarrg....grrrrlvllleallllaaallvpagsvsp............ 100
                 ++ggv v + +GN +    ++  +g+ + a++a++++++Fv G  ++ ll r +     ++    +++ a++l aa+ +  + +               
  KKY18030.1 193 GTGGVPVPNNSGNSTVTQSSAtNDGSISRAVHAILMVGSFVGGYPMGVLLFRIFgkvwMHWLVQSIATLAVILGAASGIYLSVK--Ydkhpklnsahqg 289
                 689999*******99998887244666999999999999998777777665554222234443333333555555554433222..1346777777777 PP

     DUF1275 101 ...lalallaf 108
                    ++++l+ +
  KKY18030.1 290 iglALTILVIA 300
                 55433333333 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.3
     DUF1275   49 a.alvsllaFvlGaalagllarrg..............grrrrlvllleallllaaall 92  
                    a+++ l+F +G   +  + +++              ++++  v ++ ++ ll++al+
  KKY18030.1  956 DfAGIPSLSFTFGRTSTDPVYHYHsiydsfywmdkfgdPSWHYHVAAAKVINLLTVALV 1014
                  34678888888888888855555445666777777767778888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.45
# Mc/sec: 7839.93
//
Query:       KKY18031.1  [L=1432]
Description: putative acetamidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-85  288.4   0.0    1.8e-85  287.6   0.0    1.4  1  Amidase       Amidase
  ------ inclusion threshold ------
       0.12   11.4   0.0       0.24   10.4   0.0    1.4  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.6   0.0     2e-89   1.8e-85       2     451 .]     930    1408 ..     929    1408 .. 0.86

  Alignments for each domain:
  == domain 1  score: 287.6 bits;  conditional E-value: 2e-89
                  HHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEE CS
     Amidase    2 lveaflkrieavneklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgk 98  
                  +++++ k + +++ek+n++ +++i+ea+++A+           +gpL+G+P+s+KD+i vkg+++t G++  +++p ++D ++v+ Lk+aGa++++k
  KKY18031.1  930 ILRTYGKVAVKAHEKTNCVTEFMIPEAEKWAEHEVNF------DGPLAGIPVSLKDSIVVKGFDATVGYSRNAGKPYTEDGVMVKILKDAGAIPYVK 1020
                  77888888999********************987755......69**************************************************** PP

                  E--SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB-....-SSTTT-EEE CS
     Amidase   99 TnmdefamgsstensvfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvv....alessldvvG 191 
                  T ++ ++++ +++n++ g ++NP +++++pGGS GG++A++A g+  ++iG+D++GS+R PA++ g++ l+ ++gr ++ g+     ++e + +v  
  KKY18031.1 1021 TALPITLLSFESSNPLWGIAKNPHNPKYSPGGSTGGEGALLALGG-RIGIGSDVAGSVRAPAAWSGTYSLRCSTGRWPKTGMStsmpGQEGIPSVFS 1116
                  ******************************************997.79************************************************* PP

                  EEESSHHHHHHHHHHHBS--TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CC...GGGHH CS
     Amidase  192 plarsvedlalllrvilgedpkdstssvipeesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelps...leeal 285 
                  p++r+++dl ++ + ++g+ p+ ++ sv p + ++ + ++  ++  lriG++++dgv++++p+++ra++  + aL++aGh+v+++++p    ++ al
  KKY18031.1 1117 PMTRTLDDLTYFTKSLIGMKPWTYDYSVHPIPWRESDYTTTVTNPSLRIGLMTTDGVVQPSPAIERALNLSATALRAAGHTVIPITTPPtasPALAL 1213
                  ***************************9994555555555556669***************************************977511144566 PP

                  HHHHHHHHHHHHHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCC.HHHHHHHHH.HHHHHHHHHCCC....... CS
     Amidase  286 slyylilvaeassnlarylgvryerlsetkvlsellpksraellgeevkrrielgnyalsaeassky.ylkaqkvrr.llrrefakafee....... 373 
                  +l  l+l +++ ++++++     + + ++ +l  +++ +r+ +++ ++ +r ++     ++  ++      a++    + r++f+  + +       
  KKY18031.1 1214 RLASLLLNSDGTKTYRSFFRTLERTDPGAAQLTFYMSLPRPIKYLWYLYVRYIRRDGLWASLLRDFHpKTAAEQWSLvAQRETFKSTWFAwwdqpan 1310
                  6888888888888877776664455555555555555566666666666666666655555543333233333333334444555555556666*** PP

                  .BSEEEEESSSSS--BCCCCCHHH..CSHHHHHGCCTTT...HHHHHTT--EEEEECCCCT..................TECEEEEEEESTT-HHHH CS
     Amidase  374 .lDvllsPtaptpaprlgekdkti..dsytvlynlldftavvvpvnlaglpalsvpagksed.................glPvGvqvigkafqeetl 450 
                   +D++l+P+ +tpa ++g +++++    yt+l+nlld+ta+vvpv+ ++ + +++  g + +                 glP +vqv+g+++ ee++
  KKY18031.1 1311 aFDFILCPVNATPALPHGCMSHAVssCGYTFLWNLLDYTAGVVPVTKVDAKLDALETGWKPTngveegayrdydavrmqGLPCAVQVVGRRLTEEKV 1407
                  **********************999999********************************888********************************99 PP

                  H CS
     Amidase  451 L 451 
                  L
  KKY18031.1 1408 L 1408
                  8 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   2.7e-05      0.24      34     176 ..     305     446 ..     294     454 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 2.7e-05
  Fungal_trans  34 yaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektssdralher..hhgvavrlarslg 128
                   +++p+l+lai+  +++  + + +     +t  +         a+ +    +    +s++ +q+Ll   ++    ++ +      ++ +a  +a +lg
    KKY18031.1 305 KSKPILFLAIVTAACNVIRPDLRAGLVVETMRA--------YADRVV---C-RGEKSMELVQALLVSTTWYAPPERYEELNFnqLIHMAAVMAIDLG 389
                   566777777777777777777777666666544........445455...3.445569****99999999999998555555689999989****** PP

  Fungal_trans 129 Lhrnpsyvgkks..........lwklweeeaesrrRlwwaaFylDktialklGrppll 176
                   ++++ +  +                 +++   + rR+w++++++    ++ l+rp l+
    KKY18031.1 390 MGKRTKPGYMGAynyylekrafARIPDPD-NPETRRTWLGCYFMCANASMSLRRPLLI 446
                   **998876655589*******76666666.8899**********99999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.02u 0.40s 00:00:01.42 Elapsed: 00:00:00.56
# Mc/sec: 7721.32
//
Query:       KKY18032.1  [L=158]
Description: putative thioesterase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-14   52.8   0.0    5.7e-14   52.2   0.0    1.3  1  4HBT      Thioesterase superfamily
    0.00031   21.1   0.0    0.00046   20.5   0.0    1.2  1  4HBT_3    Thioesterase-like superfamily
  ------ inclusion threshold ------
      0.043   14.3   0.0      0.051   14.1   0.0    1.3  1  4HBT_2    Thioesterase-like superfamily


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   9.5e-18   5.7e-14       2      78 ..      62     141 ..      61     142 .. 0.96

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 9.5e-18
                 SSB-HHHHHHHHHHHHHHHHHHTTST...TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCEE CS
        4HBT   2 GvvhgGvylallDeaagaalrslggr...gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgrlv 78 
                 G +hgG+  +++D + ++alr+++++   ++l v++ l+++flrp+ lg el++e++v++ gr+ a+++ ++ + +++++
  KKY18032.1  62 GSMHGGAASTFMDCITSYALRTIAKEgfwDYLGVTRTLTLTFLRPMPLGTELRLEGEVVQYGRKLASLSGKISRVSDGQP 141
                 99********************************************************************9999888765 PP

>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   7.6e-08   0.00046      12      80 ..      72     146 ..      53     151 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 7.6e-08
                 -HHHHHHHHHHHHHHT..-S.SS...EEEEEEE-S---SE.EEEEEEEEEE--SS-EEEEEEEEE..TTEEEEEEE CS
      4HBT_3  12 yGGyvlAlalraaqrt.vpdprl...hslhvyFlrpgdag.pviyhvervrdGrsfstrtvelsq..ggrpiftat 80 
                 +  ++++ alr + +  + d+ l   ++l+++Flrp + g +++++ e+v  Gr+ + ++ ++s+  +g+p++t++
  KKY18032.1  72 FMDCITSYALRTIAKEgFWDY-LgvtRTLTLTFLRPMPLGtELRLEGEVVQYGRKLASLSGKISRvsDGQPCVTCV 146
                 333455555555555534444.35589************************************88779*****986 PP

>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   8.5e-06     0.051      35     108 ..      80     156 ..      28     158 .] 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 8.5e-06
      4HBT_2  35 ksrsiarrgiglilssa...hvryrrplkfpdrltvefrvididaktliiehrflsnadgkkaarveerivvmdygk 108
                   r+ia++g+ ++l+ +   ++++ rp+ ++++l+ e  v+++ +k   +  ++ + +dg+ + +++ + v++d ++
  KKY18032.1  80 ALRTIAKEGFWDYLGVTrtlTLTFLRPMPLGTELRLEGEVVQYGRKLASLSGKISRVSDGQPCVTCVHDKVMVDFKE 156
                 45788888886666555555**************************9*****9999889999*********999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.31s 00:00:00.81 Elapsed: 00:00:00.50
# Mc/sec: 949.08
//
Query:       KKY18033.1  [L=874]
Description: putative integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-33  116.0  21.0    4.7e-32  111.3  16.4    2.1  2  TRP       Transient receptor potential (TRP) ion channel


Domain annotation for each model (and alignments):
>> TRP  Transient receptor potential (TRP) ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1   0.00011       1.9      51      81 ..      10      40 ..       7      44 .. 0.91
   2 !  111.3  16.4   2.6e-36   4.7e-32     131     401 ..      58     323 ..      41     329 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00011
         TRP 51 igmlsvnyPpvlaawtqnfaWsmglirvsfm 81
                +g l ++yP+ +++ +++  Ws+++++ sf+
  KKY18033.1 10 LGSLTLDYPGYYQPVISQASWSALMFNQSFV 40
                68899*********************99887 PP

  == domain 2  score: 111.3 bits;  conditional E-value: 2.6e-36
         TRP 131 r..GikrvaekagiestnafmtgllffliliallvvlvllfKlllellark.klikedrlkefrknwlgilkgallrlilifffqllvlclfeftqrds 226
                 +  G+ r+ +++g+ s ++++ g++++l++i++++v+++ + ++l+++ r+ ++++e++l+   kn+  +++ ++  ++  f  +++ l++f+++    
  KKY18033.1  58 GtyGLDRTSQYVGMTSVKDIWAGMMIWLLVILAAAVAMAQVGFFLRWVLRTvSHVQEEDLRA--KNMPFTVGNVIRIVFNFFLLPIISLSMFQLVIAPQ 154
                 255**********************9999999999999999999987766635555677765..8999999999999999999************6665 PP

         TRP 227 ..aavvvlAvillalflgvllffafrvlitarkskrlhknpaylLysdkkvlnkyGflyeqyrasrywffvpllvylfvkalfialaqgsGkvQviall 323
                   a +v++Av++l++++   lf  + +l++ar   r        L++d  ++  yG ly+ y  ++  f ++ l++ f++++ +++ q sG++Q+i+l 
  KKY18033.1 155 gpAYTVAIAVVVLVTLF---LFSGWVMLLFARTPRRS------YLFDDLPTVLLYGPLYNTYSDDAATFALIPLFVNFLRGIAVGAVQPSGIAQIILLA 244
                 11555566666665555...67788888888886666......6******************************************************* PP

         TRP 324 iiEllylvlliwlrPyed.krtnvlniiisvvkvlnvilllaFseefglseivktvvGvvlivinavlalvlliliivn 401
                 + E++    l  +rP+ +  + n+ + i+++++++++il++aF+ ++gl e++k+ +G+ ++++++++ ++ ++l +++
  KKY18033.1 245 VSEVILALTLNAFRPFPSpTSMNIYQTILAIIRLVTIILSIAFVPSLGLTEAPKGWIGYAILLMHGAVLIFGFLLNALS 323
                 ****************98467899999**************************************99988766555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 5926.09
//
Query:       KKY18034.1  [L=714]
Description: putative l-ascorbate oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-44  151.0   0.7    4.2e-44  149.4   0.7    1.9  1  Cu-oxidase_3  Multicopper oxidase
      3e-34  117.7   8.0    1.2e-29  102.8   0.1    3.8  3  Cu-oxidase_2  Multicopper oxidase
    3.4e-33  115.0   0.0    1.9e-31  109.3   0.0    2.4  2  Cu-oxidase    Multicopper oxidase


Domain annotation for each model (and alignments):
>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.4   0.7   7.1e-48   4.2e-44       4     118 ..     120     233 ..     117     234 .. 0.95

  Alignments for each domain:
  == domain 1  score: 149.4 bits;  conditional E-value: 7.1e-48
                   EEEEECTTEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-SSS-B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEEEEEE-- CS
  Cu-oxidase_3   4 ektvsplggterevitvNgqfpgptievregdtvvvnvtNkldentsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtlwYhshl 100
                   ++ ++p+g   r+++++N+qfpgp iev+egdt+vvnv+Nk+++ tsihwhG+  ++++wmDG  gvt+cpi+pg++f+y+f+v+ qagt+wYh+h 
    KKY18034.1 120 DEVANPDGVY-RPMLLINKQFPGPLIEVNEGDTIVVNVHNKAKNATSIHWHGIFNKGSNWMDGTVGVTNCPIAPGSEFRYEFKVDGQAGTYWYHAHH 215
                   5566777777.************************************************************************************** PP

                   TTHHHTT-EEEEEEE-HH CS
  Cu-oxidase_3 101 slqqaaGlaGaiiiedke 118
                     q  +Gl G++ii++k+
    KKY18034.1 216 GVQTSDGLLGPLIIHSKQ 233
                   ***************987 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.4   2.2e-06     0.013      29     134 ..     140     230 ..     110     233 .. 0.80
   2 ?   -1.9   0.0      0.42   2.5e+03      59      96 ..     333     369 ..     284     388 .. 0.59
   3 !  102.8   0.1     2e-33   1.2e-29      36     133 ..     554     661 ..     515     665 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.2e-06
                   TTSSEEEEEETTEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES..S-EEEEEEESSHHHHH CS
  Cu-oxidase_2  29 sentnvitlpkgevveiviqnntklpHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfkad.npGvwllHCHilwHld 124
                   +   + i++++g+++ + ++n++k   ++H+HG      ++g++           ++  v      + pg++++++fk+d ++G + +H H    ++
    KKY18034.1 140 P--GPLIEVNEGDTIVVNVHNKAKNATSIHWHGI----FNKGSNW----------MDGTVGVTNCPIAPGSEFRYEFKVDgQAGTYWYHAHHGVQTS 220
                   4..7899**************************9....3333333..........22233334567899**********99************9999 PP

                   TT-EEEEEEE CS
  Cu-oxidase_2 125 qGmalqfvvr 134
                    G+ + +++ 
    KKY18034.1 221 DGLLGPLIIH 230
                   9999988876 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.42
                   ESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE- CS
  Cu-oxidase_2  59 lHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvp 96 
                    + h+f++ + ++ +  ++  +++n  np +r  + v+
    KKY18034.1 333 VDEHQFAITEVDGTDILPTYFHRLNI-NPAQRYSIVVN 369
                   45566666666666633333333333.33333333333 PP

  == domain 3  score: 102.8 bits;  conditional E-value: 2e-33
                   EEETTEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECC..........CCCCTCCSSGC........CGSSCBSEEEE-TTEEEEEEEES.S-EEEE CS
  Cu-oxidase_2  36 tlpkgevveiviqnntklpHPfHlHGhdfqvlgrgpgn..........dpeedpksynl........enpvrrdtvqvppggwvairfkadnpGvwl 114
                   t+   ++++++++n +++ HP+HlHGh+f++lg+g++                p             +np rrdt+++++ gw+ ir+  dnpGvwl
    KKY18034.1 554 TISPASTIDLIFTNFDDGSHPLHLHGHKFFILGQGHAYpppdilspetV----P----HnpdvnsllQNPLRRDTATIESYGWLHIRVILDNPGVWL 642
                   4555899******************************988777755322....2....122335567****************************** PP

                   EEESSHHHHHTT-EEEEEE CS
  Cu-oxidase_2 115 lHCHilwHldqGmalqfvv 133
                   lHCHi wH ++Gm +++ v
    KKY18034.1 643 LHCHISWHFEAGMGMVLGV 661
                   ***************9866 PP

>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.014        86     105     141 ..     183     217 ..     144     232 .. 0.83
   2 !  109.3   0.0   3.3e-35   1.9e-31       2     158 ..     245     408 ..     244     409 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.014
                 EEESCEEE-TTEEEEEEEEE-SSSEEEEEEEEGSSSC CS
  Cu-oxidase 105 vevdsldIavGqrysvlvtanqapgnYwivasgrsnl 141
                 v v++  Ia+G+ +   ++ + + g+Yw++a  +++ 
  KKY18034.1 183 VGVTNCPIAPGSEFRYEFKVDGQAGTYWYHA--HHGV 217
                 567778899999999999998889*******..4333 PP

  == domain 2  score: 109.3 bits;  conditional E-value: 3.3e-35
                 EEEEEEEEETCBCTTSCBC.HSSCHCHHHHHTT--SEEEETTBSS.......C.....TTTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEE CS
  Cu-oxidase   2 eyvitlsDwyhkdakelekellasgkapadtppvpdavlingkggfnatladk.....dgaslatltvepgktyrlriinvsaddslnfsIeGHkltVv 95 
                 + v++++D+yh+ +++l  ++l+++++  +++pvpd  ling++  n+t  +      ++a+l+++++ep k +rlr+inv+   +++++++ H++ + 
  KKY18034.1 245 DRVVMVQDYYHDLSDGLLLKYLEPDRE--NIEPVPDGALINGQNVRNCTSLPNrkcnaKNAALPIFNLEPDKNHRLRFINVGSFAQFQIQVDEHQFAIT 341
                 5799***************9**99765..88***********999999988845666699*************************************** PP

                 EETCETTSEEEESCEEE-TTEEEEEEEEE-S.SSEEEEEEEE....GSSSCHHHHTTSEEEEEEEEST CS
  Cu-oxidase  96 evDgvyvepvevdsldIavGqrysvlvtanq.apgnYwivas....grsnlieafengtaaailryse 158
                 evDg+ + p+   +l+I ++qrys++v+an+ +++ Ywi+a+    + ++ ++    +  +ai++y++
  KKY18034.1 342 EVDGTDILPTYFHRLNINPAQRYSIVVNANNtDRDSYWIRARmvthCFGE-KNPELEPEVRAIINYQQ 408
                 *****************************9956*********98754444.55557888899999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.48
# Mc/sec: 4513.75
//
Query:       KKY18035.1  [L=427]
Description: putative acid phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-33  117.1   6.1    3.2e-33  115.4   4.2    2.4  2  Phosphoesterase  Phosphoesterase family
    0.00071   19.1   0.2     0.0012   18.4   0.2    1.4  1  Sulfatase        Sulfatase


Domain annotation for each model (and alignments):
>> Phosphoesterase  Phosphoesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.069   6.1e+02       2      17 ..      72      87 ..      71      92 .. 0.86
   2 !  115.4   4.2   3.6e-37   3.2e-33     109     355 ..      93     317 ..      84     318 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.069
  Phosphoesterase  2 khvViivqENrsfdhl 17
                     +++V+i  EN+++d +
       KKY18035.1 72 DRFVVIWLENTDYDMA 87
                     689**********975 PP

  == domain 2  score: 115.4 bits;  conditional E-value: 3.6e-37
  Phosphoesterase 109 vlwelaqeftlcDryFssvlggtepNrlflisgtsdpsGteggpsladpkktvlkgftqktigerLsekgvswaiYqealdnlakskva..... 197
                      + w   +++tl + yF ++++++epN+ + isg +     +g ++    ++ +  + + +t+ + L++ g+sw+ Yqe++ ++++++       
       KKY18035.1  93 LAWLATKGITLSN-YF-GTTHPSEPNYAAAISGDN-----FGMDN----DNFNQFPANISTVIDLLEARGISWGEYQEDM-PYSGFEGFsfvnq 174
                      5566777777765.55.9*****************.....99977....78888999***********************.6666555555566 PP

  Phosphoesterase 198 ..pfnyyvrklkklearrkalkqlglaakq..lekfkkdvkngkLPqvsfikpngandeHpgadvaagdklikevlealtsspq.waktllivt 286
                        ++n+yvrk++++  ++ +  + +  +++  l  f +d+kn++LPq  fi+pn+++d+H++ +v+ +  ++ ++l+ l ++++ +++tl++vt
       KKY18035.1 175 ktGANDYVRKHNPAILYNANADSSQRLSQMknLTMFYEDLKNDQLPQWMFITPNMTSDGHDT-SVTVAGTWTRNFLSPLLANKNfMKNTLVLVT 267
                      77************999999887776555558******************************.9****************************** PP

  Phosphoesterase 287 yDEngGfyDhVappvapvsdpdglkGdpyglgvrvPllviSpyakkgtvdhelfdhtSvlrfiekrfgl 355
                      +DEn+++     +    ++++ g+      lg  +P+ +      +gt d+++++h+S ++++e++++l
       KKY18035.1 268 FDENETY-----TI---QNRILGI-----LLGDSIPTHL------HGTTDSNFYSHYSEISTVEANWDL 317
                      ******9.....22...2233444.....6777777765......68********************98 PP

>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.2   1.3e-07    0.0012      27     143 ..      91     193 ..      74     269 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.3e-07
                 HHHHHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTTHHCTTTS-HHHHHHHHTT-EEEEEEES-SCCSGGGSHHC.CTTTSEEEET CS
   Sulfatase  27 pnldrlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgggglpqteatLpellkeaGYntaaigkwhlgwssrqsvyk.nrgfdrflgf 124
                 pnl+ la++g++++n++++   + ps+++     + +n+g+ +n ++  ++ p + +t+++ll ++G           g + ++ +y+   gf+ f++ 
  KKY18035.1  91 PNLAWLATKGITLSNYFGT---THPSEPNYAAAISGDNFGM-DNDNF--NQFPANISTVIDLLEARGISW--------GEYQEDMPYSgFEGFS-FVNQ 174
                 99***************88...7888888888888888995.34434..8*****************998........6666666555434555.7777 PP

                 SSSCHHTCCCCCCCCCECT CS
   Sulfatase 125 ptgsaalkdpekseyngev 143
                  tg++++ ++ +     ++
  KKY18035.1 175 KTGANDYVRKHNPAILYNA 193
                 7777777777666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 2695.49
//
Query:       KKY18036.1  [L=552]
Description: putative inosine-5monophosphate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.7e-128  427.8   2.2   3.2e-128  427.6   2.2    1.0  1  IMPDH         IMP dehydrogenase / GMP reductase domain
    9.5e-18   64.4   0.0    3.4e-09   37.0   0.0    2.5  2  CBS           CBS domain
    1.6e-07   30.7   0.9    3.1e-07   29.8   0.4    1.7  2  FMN_dh        FMN-dependent dehydrogenase
    3.4e-06   26.7   1.9     0.0078   15.6   2.4    2.4  2  NMO           Nitronate monooxygenase
     0.0028   17.2   2.3        0.1   12.1   0.2    2.3  2  His_biosynth  Histidine biosynthesis protein
     0.0078   16.2   0.0      0.015   15.3   0.0    1.4  1  YpsA          YspA SLOG family


Domain annotation for each model (and alignments):
>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  427.6   2.2  1.1e-131  3.2e-128       1     345 []      55     541 ..      55     541 .. 0.97

  Alignments for each domain:
  == domain 1  score: 427.6 bits;  conditional E-value: 1.1e-131
                 E--GGGEEEE---B-S-GGGSB--EESSTTEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SSS-HHHHHHHHHHHHTS................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
       IMPDH   1 gltfddvllvpaksevlpkevdlktkltkkiklniPlvsaamdtvtesemAialareGgigvihknlsieeqaeevkkvkrs................. 82 
                 +lt++d+l++p+++ ++++ev+l++ +tk+i+l++Pl+s++mdtvte++mAi++a  Gg+g+ih+n+s+eeqa++v+kvkr+                 
  KKY18036.1  55 ALTYNDFLVLPGYIGFAAAEVQLDSPITKRISLKTPLLSSPMDTVTEHNMAIHMALLGGLGIIHHNCSAEEQADMVRKVKRYengfildpivlspsttv 153
                 69************************************************************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       IMPDH  83 ................................................................................................... 82 
                                                                                                                    
  KKY18036.1 154 geakelkekwgfggfpvtengtlrskllgmittrdiqfhrdendsvtkvmstdlvtapagttlleanevlrssrkgklpivdekgnlisllsrsdltkn 252
                 *************************************************************************************************** PP

                 ...TTSXBX.TTSXB-EEEEE-SSTTHHHHHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SS-S CS
                 ...xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  83 ...pnaakd.ekgrllvgaavgvkedalervkalveagvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvGiGpG 177
                    p a+k  ++++l+ +aa+g++ d+++r+++lveag+d++++ds++g+s  ++e++k+ik++++++evi+Gnv+t+e+a++Li+ag+d++++G+G+G
  KKY18036.1 253 lhyPLASKLpDSKQLIAAAAIGTRPDDKKRLAKLVEAGLDIVILDSSQGNSIFQIEMIKWIKENYPQLEVIGGNVVTREQAASLIAAGVDGLRIGMGSG 351
                 ***88888448999************************************************************************************* PP

                 TTBHHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTBTTSSSEEEEET.TEEEEEEEETTSHHHHHH.... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.... RF
       IMPDH 178 siCttrvvagvGvpqltAvaevaeaakkagvpviaDGGikysgdivkAlaaGadavmlGsllagteEspgevilie.grkyKeyrGmgslgamkk.... 271
                 s C+t++v++vG+pq+ Av++v+++a+++gvp+iaDGGi++ g++vk la+Ga++vm+G llagt+Espge+++ + g+ +K+yrGmgs++am++    
  KKY18036.1 352 SACITQEVMAVGRPQAAAVFQVSSFAARFGVPCIADGGIQNVGHMVKGLALGASTVMMGGLLAGTTESPGEYFVNReGKLVKAYRGMGSIAAMEDkkag 450
                 ************************************************************************98767****************444689 PP

                 ...........-SS-TTS-...--SS-SBEEEEEE--B-HHHHHHHHHHHHHHHHHHHT-SSHHHHHH.....H-EEEEE-HHHHHHHS-- CS
                 ...........xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxx RF
       IMPDH 272 ...........gskdryfqk.keklvpeGvegrvpykgsvkevveqlvgglrsgmgylGaktieelke.....kakfvritaaglkeshvH 345
                              + ryf++ ++ lv++Gv g+v ++gsv+++v +l++gl+++++++G+k++ el+e     k +f+ +t ++++e++vH
  KKY18036.1 451 agtgknarasnAGTARYFSEgDRVLVAQGVAGSVVDRGSVTKFVPYLLAGLQHSLQDIGVKSLVELREgvsegKIRFELRTVSAQAEGNVH 541
                 99987776543356699986467************************************************99*****************9 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0     7e-09   2.1e-05       8      51 ..     143     189 ..     128     194 .. 0.89
   2 !   37.0   0.0   1.2e-12   3.4e-09       1      56 [.     199     254 ..     199     255 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 7e-09
                 SCEEEETTSBHHHHHHHHHHHTSSEEEEEETTT....BEEEEEEHHHH CS
         CBS   8 dvvtvppdttleealelmrekgvsrlPVVdedg....klvGivtlrDl 51 
                 d+++++p+tt++ea el ++ g++++PV+ e+g    kl+G++t rD+
  KKY18036.1 143 DPIVLSPSTTVGEAKELKEKWGFGGFPVT-ENGtlrsKLLGMITTRDI 189
                 799**************86666*******.89988777*********9 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 1.2e-12
                 HHHHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHHHHH CS
         CBS   1 VgdimtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllrall 56 
                 V+ +m++d+vt+p  ttl ea e +r+++ + lP+Vde g+l+ +++++Dl + l+
  KKY18036.1 199 VTKVMSTDLVTAPAGTTLLEANEVLRSSRKGKLPIVDEKGNLISLLSRSDLTKNLH 254
                 6789*********************987789********************98776 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.4     1e-10   3.1e-07     196     303 ..     298     413 ..     245     427 .. 0.74
   2 ?   -2.7   0.0      0.79   2.4e+03     312     343 ..     487     518 ..     474     521 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1e-10
                 CCHB-TC--HHHHHHHHHHHS.SEEEEEEE-SHHHHHHHHHTTESEEEE--GGG......TSSTT---HHHCHHHH...HHHH..SS-EEEESS--SHH CS
      FMN_dh 196 gkqldpsltwddikwlreqtk.lplvvKGvltaedakraveaGvdgivvSNHGG......RqldgapatidvLpei...veavggrievlvDgGirrGs 284
                 ++q ++ ++ + ikw++e+ + l+++   v+t e a  +++aGvdg+ +    G        +    +   +  ++   +++    ++ ++DgGi++  
  KKY18036.1 298 SSQGNSIFQIEMIKWIKENYPqLEVIGGNVVTREQAASLIAAGVDGLRIGMGSGsacitqEVMAVGRPQAAAVFQVssfAARF--GVPCIADGGIQNVG 394
                 455566779999******99847777777********************9999977777633333333333333331114444..4************* PP

                 HHHHHHHTT-SEEEESHHH CS
      FMN_dh 285 DvlkAlalGAdavllGRpf 303
                 +++k lalGA+ v++G  +
  KKY18036.1 395 HMVKGLALGASTVMMGGLL 413
                 ****************865 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.79
                 HHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHC CS
      FMN_dh 312 eeGvervleilraelertmallGvksvaeldr 343
                 +  v++ +  l a l+++++ +Gvks+ el++
  KKY18036.1 487 RGSVTKFVPYLLAGLQHSLQDIGVKSLVELRE 518
                 55688999999999************999976 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0005       1.5       3      59 ..      80     135 ..      78     163 .. 0.86
   2 !   15.6   2.4   2.6e-06    0.0078     193     238 ..     372     426 ..     321     436 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0005
         NMO   3 lltellkikppvvqpgmggiskarLaaavsnaGgLGvlasgyltaDrlakeirkvka 59 
                 ++t+ +  k p+  ++m  +++ ++a   +  GgLG++     +a + a+ +rkvk+
  KKY18036.1  80 PITKRISLKTPLLSSPMDTVTEHNMAIHMALLGGLGIIH-HNCSAEEQADMVRKVKR 135
                 567778899*****************************9.55666677788888876 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 2.6e-06
         NMO 193 d.........iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesdakdahk 238
                 +         +P iA GGi +   +   LalGAs v +g  + +t es+ +  ++
  KKY18036.1 372 QvssfaarfgVPCIADGGIQNVGHMVKGLALGASTVMMGGLLAGTTESPGEYFVN 426
                 1223444677**************************************9876665 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.1    0.0061        18      48     102 ..     293     347 ..     281     354 .. 0.80
   2 !   12.1   0.2   3.4e-05       0.1     165     223 ..     355     413 ..     350     417 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0061
                   EEEHHHHCTTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEES CS
  His_biosynth  48 vvDldaakegreanldlveeiaeevfipvqvGGGIrsledveelleagadkviig 102
                   +v ld ++ ++  ++++++ i e+      +GG + + e++++l+ ag+d + ig
    KKY18036.1 293 IVILDSSQGNSIFQIEMIKWIKENYPQLEVIGGNVVTREQAASLIAAGVDGLRIG 347
                   566888888888999*******996555556666***************965554 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.4e-05
                   EEEETTTTTTSS---HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTCSEEEESHHH CS
  His_biosynth 165 lltdidrdGtlsGpdleltkelaeavkipviasGGvgsledlkelksegvdavivgsal 223
                   + +++ ++G  +   + +++++a+++ +p ia GG++++ ++ +  + g++ v++g +l
    KKY18036.1 355 ITQEVMAVGRPQAAAVFQVSSFAARFGVPCIADGGIQNVGHMVKGLALGASTVMMGGLL 413
                   66777777888888888888999999999999999999999999999999999988765 PP

>> YpsA  YspA SLOG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   5.1e-06     0.015      29      71 ..     280     322 ..     279     324 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.1e-06
                 HHHHHHHHTTT--EEEE---TTHHHHHHHHHHTTTTT-TT-EE CS
        YpsA  29 kkklkelleeglewviisgqlGvelwaaevvleLkeeypelkl 71 
                 kk+l +l+e gl+ vi+  ++G  ++ +e+++ +ke+yp+l++
  KKY18036.1 280 KKRLAKLVEAGLDIVILDSSQGNSIFQIEMIKWIKENYPQLEV 322
                 689************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3603.97
//
Query:       KKY18037.1  [L=1487]
Description: putative ras gtpase activating protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-55  186.1   1.8    7.1e-55  185.9   0.0    2.1  2  RasGAP     GTPase-activator protein for Ras-like GTPase
    6.4e-51  172.1   3.6      2e-50  170.5   3.6    2.0  1  RasGAP_C   RasGAP C-terminus
    6.3e-15   53.5  52.3      0.034   13.9   0.0   14.4 14  IQ         IQ calmodulin-binding motif
    5.6e-12   45.8   0.0      2e-11   44.0   0.0    2.0  2  CH         Calponin homology (CH) domain
  ------ inclusion threshold ------
      0.079   12.6   5.0       0.48   10.1   1.2    2.5  2  ALC        Phage ALC protein
      0.083   12.0   0.0       0.19   10.8   0.0    1.6  1  DUF4708    Domain of unknown function (DUF4708)
      0.086   12.7   0.0       0.27   11.1   0.0    1.8  1  CAMSAP_CH  CAMSAP CH domain


Domain annotation for each model (and alignments):
>> RasGAP  GTPase-activator protein for Ras-like GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.9   0.0   2.8e-58   7.1e-55       4     208 .]     862    1067 ..     859    1067 .. 0.98
   2 ?   -3.5   0.5       2.8   7.1e+03       5      80 ..    1279    1358 ..    1276    1384 .. 0.58

  Alignments for each domain:
  == domain 1  score: 185.9 bits;  conditional E-value: 2.8e-58
      RasGAP    4 eliklElessenpndllrsnsvvsklleeytkrpegqeyLkkilkpllqkil.ekedlnlelDPrkiyeelkkkkesktgkksessgkksekeasel 99  
                  + ik+E+e +++++d+lr n+++ kl+  y k+p+ ++yL++il+ l+++ + ++++l+le+DP++iy ++++++e +tg++s++++++ ++ea+++
  KKY18037.1  862 RSIKEEVEGARSLQDYLRTNTFWNKLFGAYIKSPKDRKYLRDILGHLVKENIiDNPQLDLESDPMQIYLSAINNEELRTGQRSRRNPNVPREEAIRD 958 
                  689***********************************************988******************************************** PP

      RasGAP  100 ekvsqmleknldkLkelvneildsIfksleqlPvgiRiickqirekvkekfpdaseeeilnligsflflrfliPaivnPklfglvdkqiseeqrrnL 196 
                  ++++ ++++++++L++++++++  +  +l+++P+g+R++++q++e ++ +f+d+++++il+l+g++l+ +fl Pa+++P+ fg+vd+ +++eq+rnL
  KKY18037.1  959 PETRATFIHHMQDLRDIADQFFAILEDTLHKMPFGVRYVVQQMYEFLHTRFQDEDPNSILQLVGQWLWKNFLQPALTEPEKFGVVDRGMTQEQKRNL 1055
                  ************************************************************************************************* PP

      RasGAP  197 tliaKllqnlan 208 
                  ++iaK+l ++a+
  KKY18037.1 1056 GEIAKVLGQIAS 1067
                  *********995 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.8
      RasGAP    5 liklEl....essenpndllrsnsvvsklleeytkrpegqeyLkkilkpl...lqkilekedlnlelDPrkiyeelkkkkesk 80  
                  +++lE     ++ +n++dll  n +  ++ ++  +r + q+ L+++ ++l     + +   +++l++   +i++ ++  + +k
  KKY18037.1 1279 ILQLESigriTRRNNYQDLL--NDIAVDIRTKHRRRIQRQRELDNVRTTLarlNEQAV-YLEQQLKTYNDYIEQAMVTLQNKK 1358
                  55655555557788888888..888888888888887778887776544422122222.333333444444555555544444 PP

>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.5   3.6   7.8e-54     2e-50       1     136 [.    1268    1407 ..    1268    1408 .. 0.98

  Alignments for each domain:
  == domain 1  score: 170.5 bits;  conditional E-value: 7.8e-54
    RasGAP_C    1 lvelkkkalenlkeLeelgvisrennyqellneIakdirnkgrlrekrkeElesleetlktLseknnylesqlesYkayienvleqlkkkkgk.... 93  
                  ++elk+ alen+++Le+ g+i+r+nnyq+lln+Ia dir+k+r+r +r++El+ +++tl++L+e+  yle+ql++Y++yie+++ +l++kkgk    
  KKY18037.1 1268 YAELKSIALENILQLESIGRITRRNNYQDLLNDIAVDIRTKHRRRIQRQRELDNVRTTLARLNEQAVYLEQQLKTYNDYIEQAMVTLQNKKGKkrfl 1364
                  89*****************************************************************************************777*** PP

    RasGAP_C   94 lpfskqyfkkrelkksgklpkfgsykysakqLeekgVLleieg 136 
                  +pfskq+ ++rel++sg++ kfgsykysa+ L++kgVL+++ g
  KKY18037.1 1365 MPFSKQWEHERELQRSGRSFKFGSYKYSARTLADKGVLVHWRG 1407
                  ***************************************9976 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.031        80       7      19 ..     316     328 ..     311     330 .. 0.90
   2 ?   -0.7   0.5      0.68   1.7e+03       7      18 ..     346     357 ..     346     359 .. 0.84
   3 !   13.2   0.7   2.3e-05     0.059       4      20 ..     369     385 ..     366     386 .. 0.87
   4 !    8.2   0.0   0.00092       2.4       4      19 ..     399     414 ..     396     416 .. 0.88
   5 !    8.2   0.7   0.00096       2.4       7      19 ..     432     444 ..     429     445 .. 0.92
   6 !    8.9   0.4   0.00054       1.4       5      19 ..     460     474 ..     457     475 .. 0.88
   7 ?    1.0   0.0      0.19   4.8e+02       7      19 ..     492     504 ..     491     505 .. 0.88
   8 ?    2.2   0.1     0.076     2e+02       2      17 ..     517     532 ..     516     535 .. 0.84
   9 !    7.0   0.0    0.0022       5.6       2      19 ..     547     564 ..     546     565 .. 0.91
  10 ?    0.3   0.0      0.33   8.4e+02       4      19 ..     579     594 ..     576     595 .. 0.85
  11 !    5.9   0.2    0.0051        13       1      18 [.     606     623 ..     606     625 .. 0.91
  12 !   13.9   0.0   1.3e-05     0.034       3      20 ..     638     655 ..     636     656 .. 0.92
  13 ?    4.5   0.3     0.014        36       3      21 .]     668     686 ..     666     686 .. 0.85
  14 ?    2.6   0.4     0.059   1.5e+02      10      18 ..    1404    1412 ..    1404    1413 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.031
                 HHHHHHHHHHHHH CS
          IQ   7 IQaawRGylaRkr 19 
                 +Qa++RG l+R r
  KKY18037.1 316 LQAQIRGALTRAR 328
                 7*********976 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.68
                 HHHHHHHHHHHH CS
          IQ   7 IQaawRGylaRk 18 
                 +Qa++RG +aR+
  KKY18037.1 346 LQARIRGDWARQ 357
                 7******77776 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 2.3e-05
                 HHHHHHHHHHHHHHHHH CS
          IQ   4 aikIQaawRGylaRkry 20 
                  +k+Q+a RG++aR++ 
  KKY18037.1 369 SVKLQSAARGFVARRKI 385
                 58*************85 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.00092
                 HHHHHHHHHHHHHHHH CS
          IQ   4 aikIQaawRGylaRkr 19 
                 ++k+Q+ +R+ +aR +
  KKY18037.1 399 IVKLQSLFRARRARVE 414
                 89************87 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.00096
                 HHHHHHHHHHHHH CS
          IQ   7 IQaawRGylaRkr 19 
                 +Qaa+RG laR+r
  KKY18037.1 432 LQAAIRGTLARQR 444
                 8**********97 PP

  == domain 6  score: 8.9 bits;  conditional E-value: 0.00054
                 HHHHHHHHHHHHHHH CS
          IQ   5 ikIQaawRGylaRkr 19 
                  + Q+a R+ylaR r
  KKY18037.1 460 STVQSAARAYLARSR 474
                 689**********87 PP

  == domain 7  score: 1.0 bits;  conditional E-value: 0.19
                 HHHHHHHHHHHHH CS
          IQ   7 IQaawRGylaRkr 19 
                 +Qaa RG  aR +
  KKY18037.1 492 LQAAARGLSARTK 504
                 8******999975 PP

  == domain 8  score: 2.2 bits;  conditional E-value: 0.076
                 HHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaR 17 
                 ++++ +Qa +R+  +R
  KKY18037.1 517 SSITQLQALIRAGTVR 532
                 589********97776 PP

  == domain 9  score: 7.0 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkr 19 
                 +a++++Q   R+ylaR r
  KKY18037.1 547 SAVTILQGDMRAYLARHR 564
                 79**************86 PP

  == domain 10  score: 0.3 bits;  conditional E-value: 0.33
                 HHHHHHHHHHHHHHHH CS
          IQ   4 aikIQaawRGylaRkr 19 
                 ++ +Qa  R+ ++R++
  KKY18037.1 579 IVELQALSRAAVVRRE 594
                 7789**********97 PP

  == domain 11  score: 5.9 bits;  conditional E-value: 0.0051
                 HHHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaRk 18 
                 ++a+i +Qa  R+ l+R 
  KKY18037.1 606 TDAIIQLQALSRAILCRN 623
                 58**************96 PP

  == domain 12  score: 13.9 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHHHHHHH CS
          IQ   3 aaikIQaawRGylaRkry 20 
                 ++i IQ+a+RG l+R ++
  KKY18037.1 638 SIIEIQSAIRGKLVRSKF 655
                 7999***********998 PP

  == domain 13  score: 4.5 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHHHHHHH CS
          IQ   3 aaikIQaawRGylaRkryk 21 
                  ++kIQ+  R+  + ++yk
  KKY18037.1 668 KVVKIQSIARAKIQGQAYK 686
                 689********99888776 PP

  == domain 14  score: 2.6 bits;  conditional E-value: 0.059
                  HHHHHHHHH CS
          IQ   10 awRGylaRk 18  
                  +wRG+l R+
  KKY18037.1 1404 HWRGFLERQ 1412
                  8******98 PP

>> CH  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   7.8e-15     2e-11       6     105 ..     137     236 ..     133     240 .. 0.89
   2 ?   -3.7   0.0       5.3   1.4e+04      39      70 ..    1296    1327 ..    1294    1332 .. 0.76

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 7.8e-15
                 HHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTT.HHHHHHHHHHHHHHHHHHTTCHTTSS.-HHHHHTTSHH.HHHHHHH CS
          CH   6 ellrWinshleeagpkvkvedfeedlrDGvlLckLlnklapglvdkkklnks.efkkleNinlaldvaekklgvpkvli.eaedlvegknk.svltlla 101
                 e+ +Wi++ +++ +p   + ++ee+lrDGv L++++++l+p++      n++ +f++ +Ni+ ++ ++e ++ +p++   e +dl+e+kn  +v+ +++
  KKY18037.1 137 EAKEWIEDIIHKPIP--PIVQLEEALRDGVTLAEIVQALYPHKPLRIFRNPKlQFRHSDNIAVFFRFLE-DVELPDLFRfELVDLYEKKNIpKVIYCIH 232
                 5789******99655..458*********************994444445559****************.***************************** PP

                 HHHH CS
          CH 102 qLfr 105
                 +L++
  KKY18037.1 233 ALSW 236
                 *987 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5.3
                  HHHHHHSTTTSSGGGSTTTHHHHHHHHHHHHH CS
          CH   39 kLlnklapglvdkkklnksefkkleNinlald 70  
                  +Lln +a +   k +   ++++ l+N+++ l 
  KKY18037.1 1296 DLLNDIAVDIRTKHRRRIQRQRELDNVRTTLA 1327
                  67888888887777777779999999998775 PP

>> ALC  Phage ALC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.021        54      31      96 ..     737     814 ..     725     838 .. 0.80
   2 ?   10.1   1.2   0.00019      0.48      30      91 ..    1290    1348 ..    1281    1360 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.021
         ALC  31 vgyltdlkkdlakavkrkkaikvraearlk...qarellaelveeskvfleirlak.........ydlevyvtatlPd 96 
                  +y+t+l  ++a  vk+k +  +  + + +      +ll+++   sk+ ++ +  +         y+   +v +t+P 
  KKY18037.1 737 DQYITQLDIKIALLVKNKITLDEVVKHQKHfggHVGNLLSNADISSKDPFDLKALNktsrrklehYQELFFVLQTQPH 814
                 57******************99988877765567889***99999999888665444667888866666788999996 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00019
         ALC   30 rvgyltdlkkdlakavkrkkaikvraearlkqarellaelveeskvfleirlakydlevyvt 91  
                  r++   dl +d+a  +++k+ ++ +++++l++ r  la l  e  v+le +l  y+   y++
  KKY18037.1 1290 RRNNYQDLLNDIAVDIRTKHRRRIQRQRELDNVRTTLARLN-EQAVYLEQQLKTYN--DYIE 1348
                  5555689*******************************985.788******99874..4555 PP

>> DUF4708  Domain of unknown function (DUF4708)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.5e-05      0.19     204     272 ..     861     929 ..     856     930 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.5e-05
     DUF4708 204 visiskeipsdspfksyedlqkhWknlyGYkLPedeeeeiycsvyfkligerlftYPlscirsqPvqil 272
                 v si+ e++    +++y    ++W++l+G  + + ++++    +  +l++e++   P+  ++s P+qi+
  KKY18037.1 861 VRSIKEEVEGARSLQDYLRTNTFWNKLFGAYIKSPKDRKYLRDILGHLVKENIIDNPQLDLESDPMQIY 929
                 679999***********************99999999999999************************85 PP

>> CAMSAP_CH  CAMSAP CH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0001      0.27       9      81 ..     149     218 ..     144     221 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
   CAMSAP_CH   9 lippvedllrdlsdGvaLaalihfYcPql.iklediclkesmsladslyNiqllqefcer.kLgnsvfhltleDl 81 
                  ipp+  l + l+dGv La++++ ++P+  +++    +++   ++   +Ni  ++ f e+ +L  + f ++l Dl
  KKY18037.1 149 PIPPIVQLEEALRDGVTLAEIVQALYPHKpLRI----FRNPKLQFRHSDNIAVFFRFLEDvEL-PDLFRFELVDL 218
                 689999999******************972443....56666667777888888888876344.66666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       980  (0.05466); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.50
# Mc/sec: 8903.15
//
Query:       KKY18038.1  [L=776]
Description: hypothetical protein UCRPC4_g05241 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.085   12.3   0.0       0.13   11.7   0.0    1.2  1  PTPA      Phosphotyrosyl phosphate activator (PTPA) protein
        3.5    8.1  11.1        8.9    6.8   2.3    2.7  2  DUF3245   Protein of unknown function (DUF3245)
        5.5    6.4  10.8       0.28   10.6   3.5    2.2  2  DUF3552   Domain of unknown function (DUF3552)


Domain annotation for each model (and alignments):
>> PTPA  Phosphotyrosyl phosphate activator (PTPA) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.2e-05      0.13      30      99 ..      60     133 ..      42     163 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.2e-05
                 HHHHHT............T-SS-HHHHHHHHHHHHHCCCTS---SS--SSS-THHHHHHHHHHHHHHHHHHHHS CS
        PTPA  30 lneavkgkklee....eeeasesvekllklLdeleelideippeeqpsRfGnkafrtwhdrleeraeelleell 99 
                 + ++v++k++++       ++ ++e+llk+L+++++++ + +pe++ +R   +af++w + l ++++ + +e  
  KKY18038.1  60 ILKKVSPKQINDlrtlLRGCKVNMEELLKFLTQCQRIAVDSTPETRGRRSIVRAFKDWGKLLWTKIQFVWKEKQ 133
                 445555555533333344557789**************************************999998887744 PP

>> DUF3245  Protein of unknown function (DUF3245)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   2.3    0.0015       8.9     103     135 ..     337     369 ..     327     383 .. 0.67
   2 ?    5.4   1.7    0.0039        24      87     138 ..     725     771 ..     695     775 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0015
     DUF3245 103 askrkaakvkkeakekakeakdddddddedesR 135
                 + +r  ++ + + + +  + +ddddddd d++R
  KKY18038.1 337 PGRRRENQDNYHYHPQDDDDDDDDDDDDVDTGR 369
                 455555665666666666666666666666888 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0039
     DUF3245  87 kvmaekekaeakkpvnaskrkaakvkkeakekakeakdddddddedesRska 138
                  ++ ++++++ ++p    +r++   +++ ++      d++dddd+d +R  +
  KKY18038.1 725 SIHEDHHEIRRRTPN---RRSRRMRADHYDTYDR--YDNNDDDDDDSGRYHE 771
                 566666666666663...3333333445555444..7888888888888655 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.7      0.17     1e+03     157     184 ..     379     406 ..     374     412 .. 0.77
   2 ?   10.6   3.5   4.7e-05      0.28      89     124 ..     539     574 ..     520     578 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.17
     DUF3552 157 eeveeelkheaAkmikeieeeakeeAdk 184
                 e++++e+k e+   i+e ee ++++ d+
  KKY18038.1 379 ETARREIKAERKAAIRELEEGVRASQDR 406
                 5677888888888899988888888777 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 4.7e-05
     DUF3552  89 qkeetLdrkeeslekkeesleekekelkqkeqslee 124
                 ++e +L ++e sl+++e+sl+++e+ l+++e++ +e
  KKY18038.1 539 EREHSLREREVSLREREASLRDREQALRERERNFRE 574
                 455555555555555555555555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       852  (0.0475208); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 4861.07
//
Query:       KKY18039.1  [L=526]
Description: putative nudix family hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-07   30.9   2.9    8.3e-07   29.1   0.0    3.1  3  NUDIX            NUDIX domain
  ------ inclusion threshold ------
      0.013   15.8   9.5      0.031   14.6   9.5    1.6  1  RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc3


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   9.2e-11   8.3e-07       3      66 ..      33     115 ..      31     144 .. 0.80
   2 ?   -1.3   1.0      0.24   2.1e+03      73      85 ..     447     459 ..     413     493 .. 0.52
   3 ?   -1.4   0.8      0.26   2.3e+03      49      73 ..     461     482 ..     449     514 .. 0.53

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 9.2e-11
                 EEEEEEEEEETTSEEEEEEES..SSSTTT.EESSEEECBT...............TS.HHHHHHHHHHHHHHSEEEEEEEEEE CS
       NUDIX   3 rravgvvllnekgevLlvrrs..kkpfpg.WelPgGkvep...............gE.tpeeAArREleEEtGleaellellg 66 
                   +++++l+ +k+evLlv+r    ++ p+   +PgG  e                +  +++ +A+REl+EEtG+     +++g
  KKY18039.1  33 ESSASIILISPKNEVLLVHRVknASTYPSaHVFPGGSHENgqdgrvqkqdmkryrDCkEYRRTAIRELFEETGILLARDQVTG 115
                 6789*****************98566666467*******9999***********9555999************7333334443 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.24
                 EEEEEEEEEEEEE CS
       NUDIX  73 pydgpygdeheil 85 
                  ++g + de +  
  KKY18039.1 447 DGNGDNNDEAWTE 459
                 3333333333333 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.26
                 HHHHHHHSEEEEEEEEEEEEEEEEE CS
       NUDIX  49 REleEEtGleaellellgrlhylap 73 
                 REl+E + +++++l l +   + + 
  KKY18039.1 461 RELREHLAIQKRELGLSD---ESLE 482
                 777777777664443322...2222 PP

>> RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   9.5   3.4e-06     0.031     147     219 ..     396     513 ..     369     516 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.4e-06
  RNA_pol_3_Rpc31 147 kkeikgkskkkk................eadeedeegkelleklkelaeeeddee...............................ekkekede 193
                        +++++++kkk                e  e + +++++++kl+++ +++d +                                e+  ke+e
       KKY18039.1 396 GAANTNSKRKKKspddmrarilrkavlrELHEMEVQAANMKKKLSRKGNKGDGNGdnndeawteyrelrehlaiqkrelglsdeslENVGKEKE 489
                      2333444444446999999999999999888999999999999996555555544666788999999999999999999999865533333222 PP

  RNA_pol_3_Rpc31 194 eeeeeeeeddefdddded.ggDYNaek 219
                      ee  eeee + f+dd  d + D +ae+
       KKY18039.1 490 EE--EEEEAKGFEDDV-DvDVDFDAEN 513
                      22..356667777444.6578888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       863  (0.0481343); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.53
# Mc/sec: 2991.46
//
Query:       KKY18040.1  [L=550]
Description: putative major facilitator superfamily transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-15   56.5  12.6    2.1e-15   56.5  12.6    2.3  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5  12.6   1.2e-19   2.1e-15      30     347 ..      86     463 ..      37     469 .. 0.70
   2 !    4.1   7.5     0.001        18     204     294 ..     411     504 ..     403     512 .. 0.58

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 1.2e-19
       MFS_1  30 spseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigll 126
                 ++  ++l++t+ a+++ v +lp+G + dr+G+r   ++g +l a+g+l+++fa  +++ ++l + ++ +lg g ++ ++   ++  fp+ + g+ ++ll
  KKY18040.1  86 QEIRLNLMFTAAAVATNVCALPVGTVLDRYGPRVSGIIGSILIAIGALFFSFAmkAPFDAWLPGYIFLALG-GPFTYISSFQLSNCFPQ-HSGLILALL 182
                 4445899***************************************7777798866655************.7999999999*******.********* PP

       MFS_1 127 sagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpeepperkrkspkeee................................. 188
                 +++f  +++l  ++  l+++  +     + +f++  +v +  fv+ ++++p++  +   +  ke                                   
  KKY18040.1 183 TGAFDSSSALFLIF-RLIYEKTSgqfdTQKLFLVYLVVPIYIFVVQVFVMPRDSYKTVGEIIKEADeeinaptpddssdlpesererlheqqryrrqsi 280
                 **********9555.778866666888888899999999988885556664444444444444444566666666677777777777999999999999 PP

       MFS_1 189 .................kgtgpaplvp.....awkallkdpvl......willialllfffgfsg.....lltllplylqevlgls.........glll 245
                                  ++ +     +     +w+ l+    l      w++li+++++     +     +++++    qe++ l+          ++ 
  KKY18040.1 281 msevdtllespankkrvQREES----KnkksgVWGVLHGYSALeqirtpWFWLITFFTVIQ---MtrinyFVATIRP--QETYLLGsaskakmvnDFFD 370
                 9999999988877655422222....14555766666666666665555567777777732...2241324444444..44444446677778888888 PP

       MFS_1 246 aglllallalvgailallagrlsdrlgr.rrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfnt 343
                 a+  l+l+++++    +++g ++d+l+      ll +++ +++alg++++ ++  a+  ++++    +   f+++++  +a+++++ +  g+++gl+  
  KKY18040.1 371 AA--LPLGGVLS---IPFIGIILDHLSTpSALGLLVVIASIIGALGCLPFTWA--AITNICLF---VVYRPFYYTAVSDYAAKVFGFQTFGKVYGLIIC 459
                 88..88888888...77799999997762334444444444444444444444..33344433...348999999999999999999999999999987 PP

       MFS_1 344 agsl 347
                 + +l
  KKY18040.1 460 LAGL 463
                 7666 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.001
       MFS_1 204 lkdpvlwillialllfffgfsglltllplylqevlgls..glllaglllallalvgailallagrlsdr...lgrrrrlllallllllaalglall 294
                    p+ w++++ ++lf +   +++t +  y+ +v+g+   g ++++  +  la ++ +++  + ++ ++    ++ + +l+ l++++++  +l+l+
  KKY18040.1 411 GCLPFTWAAITNICLFVVYRPFYYTAVSDYAAKVFGFQtfGKVYGL--IICLAGLFNFVQSPLDAMTHKvfhNNPIPVNLILLFVAFIIGGSLVLF 504
                 555666766666666644444455555559********77634444..555555555778899999999433333444444444455555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 3549.65
//
Query:       KKY18041.1  [L=189]
Description: hypothetical protein UCRPC4_g05244 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-08   34.2   4.1    3.6e-08   33.5   4.1    1.3  1  MARVEL    Membrane-associating domain
    0.00026   20.7   3.7      0.012   15.3   0.2    2.1  2  DUF5058   Domain of unknown function (DUF5058)
  ------ inclusion threshold ------
       0.11   12.0   4.6        0.2   11.1   4.6    1.4  1  DUF1129   Protein of unknown function (DUF1129)


Domain annotation for each model (and alignments):
>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   4.1   6.1e-12   3.6e-08       8     137 ..      15     172 ..      10     177 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 6.1e-12
      MARVEL   8 ilrilqlvfaiiilgliasliakldqllgspssalnfavfvavfsflyalfllvlylfknsaftsilwplidlivdalaallwlvafialaaglrdisc 106
                 i rilq++  i ++g++a+++++  +  ++p+s l  ++ va++++ly++++ +l      ++++il+ +i  ++d+l+ +  +v ++++ + l+  +c
  KKY18041.1  15 IARILQIISLITVIGMTANFVSEIVSDNDHPPSVLIGTLSVACVAVLYCVITSIL------YIDNILPFIINTALDGLILVGLVVVAVVVGKPLSYLNC 107
                 67*****************************************************......88************************************ PP

      MARVEL 107 a................................fe..snqysasltvrcgqaqaavafgflavll 137
                                                  f   s+ +    ++ +g ++a +++ +++ ++
  KKY18041.1 108 QtigkvtgddssalaftsaldsslddenidyedFIgtSKATCLEMKSIWGLSIALCILFAFSAIC 172
                 *9999999999999999999999998887765511567778888888888888888888888887 PP

>> DUF5058  Domain of unknown function (DUF5058)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.5   0.00092       5.5     151     201 ..      17      65 ..      10      83 .. 0.78
   2 !   15.3   0.2   2.1e-06     0.012      59     124 ..      87     152 ..      86     177 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00092
     DUF5058 151 kllaiistaafiGlfsaliaseilksgtkgvvsliavvvsalvmvllllla 201
                 ++l+iis  ++iG+ + ++++ +  +  ++ +s+++  +s++++++l  ++
  KKY18041.1  17 RILQIISLITVIGMTANFVSEIVSDN--DHPPSVLIGTLSVACVAVLYCVI 65 
                 68999*************99999444..57778888788888887775444 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.1e-06
     DUF5058  59 ilivviaLiavlGgplpwlRLsviGsaayEltaAelaaealgvelgaesltaqafatavwvmtlgi 124
                 il++++  ++v+G+pl+ l    iG ++ + ++A + ++al+ +l +e+++ + f     + +l +
  KKY18041.1  87 ILVGLVVVAVVVGKPLSYLNCQTIGKVTGDDSSALAFTSALDSSLDDENIDYEDFIGTSKATCLEM 152
                 8999**************************************************976665555543 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   4.6   3.3e-05       0.2     113     193 ..      18      98 ..       9     104 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.3e-05
     DUF1129 113 litlllvalvgGlamvlvyrlltrekkkkkrpplwkrllilllllvvwlvlftlval...lpaviNpvLpplvliiigviafvv 193
                 ++ ++++  v G+   +v ++++   ++++ p+++  +l ++ + v++ v+++++ +   lp  iN  L+ l+l+ + v+a+vv
  KKY18041.1  18 ILQIISLITVIGMTANFVSEIVS---DNDHPPSVLIGTLSVACVAVLYCVITSILYIdniLPFIINTALDGLILVGLVVVAVVV 98 
                 77888888899999999999997...57777777777777777777776666655433339**************999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1334.96
//
Query:       KKY18042.1  [L=350]
Description: putative sam dependent [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-17   63.6   0.0    3.2e-17   62.9   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
      8e-08   32.9   0.1    3.2e-07   31.0   0.1    2.0  1  Methyltransf_25  Methyltransferase domain
    1.5e-07   31.3   0.0    1.2e-06   28.4   0.0    2.0  1  Methyltransf_31  Methyltransferase domain
    1.5e-06   28.9   0.0    6.8e-06   26.8   0.0    2.0  1  Methyltransf_12  Methyltransferase domain
      1e-05   26.1   0.0    2.3e-05   24.9   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.023   14.0   0.1        1.2    8.4   0.0    2.7  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
       0.11   12.2   0.0       0.19   11.5   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0   1.3e-20   3.2e-17       4     163 ..      76     243 ..      73     245 .. 0.80

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 1.3e-20
  Methyltransf_23   4 qre.eelsdklerllpklraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevleh 94 
                      +++ + + dkl+ l+p  + ++++ d+G+GtG ++  +++ +   +v gvDlsp+      + ++ ++d  d   ++   ++fd+I++r ++++
       KKY18042.1  76 HLFlKVMNDKLH-LAP-VKDPKSIADLGTGTGLWAMDIADVFDdaDVLGVDLSPVPYT---TQPNVEFDVDDITAEWTHGRQFDFIHMRSLFGS 164
                      555456778888.555.7999*****************99986669********8555...7899999999999******************** PP

  Methyltransf_23  95 vpdppellrqiatllkpgGylllseplasl.........kedrllldw.lylvpag..rhisffsarslkelleeaGlevv 163
                      ++d+p l rq +++l+ gGy++  e+  s          ++d l+  w ++    +  +   +f a+++k l+e+aG+ +v
       KKY18042.1 165 IEDWPGLYRQCFENLESGGYIEQVEF--SIvpyhsngspASDTLMYRWvELGTAYHkaTGKTLFIAETMKGLMEDAGFVDV 243
                      **********************9995..2233445666645555444534333333337779****************876 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.1   1.2e-10   3.2e-07       1      97 []      97     183 ..      97     183 .. 0.91

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1.2e-10
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      + dlG+GtG +++++a+ + +a+v+gvD+s+    +        ++nvef + d+++   + ++fD+++++  +  ++  d++ +++++++ L+
       KKY18042.1  97 IADLGTGTGLWAMDIADVFDDADVLGVDLSPVPYTT--------QPNVEFDVDDITAEWTHGRQFDFIHMRSLFGSIE--DWPGLYRQCFENLE 180
                      78*****************99**********98653........479********99999999*******76677765..9************* PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                       gG
       KKY18042.1 181 SGG 183
                      999 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   4.8e-10   1.2e-06       5     108 ..      95     186 ..      92     239 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 4.8e-10
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeie 98 
                      +++ DlG+GtG  +  +a  ++++a+v G+D s+  + + ++        nveF + di++  ++   ++fD+i+ ++++  + d +  +++ +
       KKY18042.1  95 KSIADLGTGTGLWAMDIA-DVFDDADVLGVDLSP--VPYTTQ-------PNVEFDVDDITAEWTH--GRQFDFIHMRSLFGSIEDWPGLYRQCF 176
                      7899**************.99************9..788899.......49**********6644..599************************ PP

  Methyltransf_31  99 rvlkpggill 108
                      ++l++gg++ 
       KKY18042.1 177 ENLESGGYIE 186
                      *******985 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   2.7e-09   6.8e-06       2      99 .]      99     185 ..      98     185 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2.7e-09
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLkp 95 
                      ++G+GtG  ++ +++ + d++++gvD+sp               + n +++++++ ++ ++g  +fD +++ +++  ++d+  + +++ + L  
       KKY18042.1  99 DLGTGTGLWAMDIADVFDDADVLGVDLSPVPY----------TTQPNVEFDVDDITAEWTHG-RQFDFIHMRSLFGSIEDWPGLYRQCFENLES 181
                      89*****************************9..........33334445555555444444.5****************************** PP

  Methyltransf_12  96 gGrl 99 
                      gG++
       KKY18042.1 182 GGYI 185
                      **85 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   9.1e-09   2.3e-05       2      94 ..      99     185 ..      98     186 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 9.1e-09
                      EET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGl 93 
                      d+G+GtG+ a ++a+ +  a+v+gvDls+           +++ +vef v d++       +fD++ +++ +  +ed+  + +++   L+ gG+
       KKY18042.1  99 DLGTGTGLWAMDIADVFddADVLGVDLSPVPY-------TTQP-NVEFDVDDITAEWTHGRQFDFIHMRSLFGSIEDWPGLYRQCFENLESGGY 184
                      9*************9999************99.......3333.38888888887545667********************************9 PP

                      E CS
  Methyltransf_11  94 l 94 
                      +
       KKY18042.1 185 I 185
                      7 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00049       1.2      41      82 ..      87     127 ..      63     198 .. 0.82
   2 ?    2.7   0.0     0.026        67     201     216 ..     228     243 ..     214     251 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00049
                      HH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-H CS
  Ubie_methyltran  41 klvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDine 82 
                      +l  vk ++++ D+ +Gtg +a++++d  +   +v ++D+++
       KKY18042.1  87 HLAPVKDPKSIADLGTGTGLWAMDIADVFD-DADVLGVDLSP 127
                      355689999****************99765.46788888875 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.026
                      HHHHHHHHHHTTEEEE CS
  Ubie_methyltran 201 qetlkeliedaGfksv 216
                      +et+k l+edaGf  v
       KKY18042.1 228 AETMKGLMEDAGFVDV 243
                      69***********987 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.4e-05      0.19      43      92 ..      90     139 ..      69     155 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.4e-05
  Methyltransf_16  43 nelsklsvlELGsGtGlvGlavaellpeakviltDleellellkknieln 92 
                          ++s+ +LG GtGl  + +a    +a+v+  Dl+ +    + n+e +
       KKY18042.1  90 PVKDPKSIADLGTGTGLWAMDIADVFDDADVLGVDLSPVPYTTQPNVEFD 139
                      44567999*******************************99999999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2307.60
//
Query:       KKY18043.1  [L=118]
Description: hypothetical protein UCRPC4_g05246 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-09   37.7   0.4    2.9e-08   33.9   0.0    2.5  3  GFA       Glutathione-dependent formaldehyde-activating enzym


Domain annotation for each model (and alignments):
>> GFA  Glutathione-dependent formaldehyde-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2      0.22   3.9e+03       2       6 ..       7      11 ..       6      17 .. 0.81
   2 !   33.9   0.0   1.6e-12   2.9e-08       2      43 ..      26      67 ..      25      70 .. 0.94
   3 ?    1.3   0.0     0.025   4.5e+02      67      92 ..      72      98 ..      68      99 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.22
         GFA  2 lChCs 6 
                +ChC 
  KKY18043.1  7 RCHCG 11
                69996 PP

  == domain 2  score: 33.9 bits;  conditional E-value: 1.6e-12
         GFA  2 lChCsdCrkasgsaftanavvkaealellegelkeykktads 43
                lChC +C+   g+ +t+n ++++e+l++++gel +y++++ds
  KKY18043.1 26 LCHCGACKVLGGGEYTLNQIIPKENLKITKGELGKYTYKGDS 67
                7************************************98876 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.025
         GFA 67 pevvivrvGtlddp.eklkpeaeiftk 92
                p+ +++r+ +l+ + +  kp+aei+ k
  KKY18043.1 72 PDKIVIRTSLLAGSeKWGKPAAEIYGK 98
                68899*******994555899999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 871.43
//
Query:       KKY18044.1  [L=579]
Description: hypothetical protein UCRPC4_g05247 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-38  129.1   0.0    1.9e-37  127.6   0.0    1.9  1  CTNNBL    Catenin-beta-like, Arm-motif containing nuclear
    0.00057   20.2   1.8      0.028   14.8   0.1    3.1  2  HEAT_2    HEAT repeats
     0.0022   18.0   0.0       0.83    9.8   0.0    3.0  2  Arm       Armadillo/beta-catenin-like repeat
  ------ inclusion threshold ------
       0.01   15.0   0.6       0.59    9.2   0.1    2.2  2  MMS19_C   RNAPII transcription regulator C-terminal


Domain annotation for each model (and alignments):
>> CTNNBL  Catenin-beta-like, Arm-motif containing nuclear
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.6   0.0   4.2e-41   1.9e-37       3     104 .]      82     188 ..      80     188 .. 0.90

  Alignments for each domain:
  == domain 1  score: 127.6 bits;  conditional E-value: 4.2e-41
      CTNNBL   3 ilelld.....eeeeeeeeekldeaalkklllklekkvkknqelRikyeddpekfmeSEadLdeeikelsvlaeapelYpelvelgavesLvgLlsHeN 96 
                 +l+++d     ++e++e  e +d+a+lkk+++ +e+k++kn+e+R+++e+dp+kfm SEadLd++ik+ls+l+e+pelY e+++lg+v sL++LlsHeN
  KKY18044.1  82 VLDFIDsrgvgKDEDDEGVEIIDSAWLKKMAIGFERKINKNAEMRSRWENDPAKFMTSEADLDSDIKALSILSEHPELYDEFAKLGCVGSLISLLSHEN 180
                 6666664444344555559******************************************************************************** PP

      CTNNBL  97 tDiaiavv 104
                 tDiaia++
  KKY18044.1 181 TDIAIAAI 188
                 *****987 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   6.2e-06     0.028      27      75 ..     163     217 ..     135     228 .. 0.75
   2 ?    3.4   0.1     0.023     1e+02       4      42 ..     273     321 ..     267     326 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.2e-06
      HEAT_2  27 ignpealpaLvellededpavRraaaeaLgai......gdpealpaLkelldddd 75 
                 ++   ++  L++ll++e++++  aa+e +g++      +++  +++L e+++d d
  KKY18044.1 163 FAKLGCVGSLISLLSHENTDIAIAAIEVIGELidedvdAEDNQWSVLVEAMLDAD 217
                 4455668889********************9955433224558999999998754 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.023
      HEAT_2   4 LlqalendpdpevrraairaLg...........rignpealpaLvelled 42 
                  +q++ ++p  + r+ a+++L+           r+ + + +++L++ll+ 
  KKY18044.1 273 RIQQA-ESPVGQNRQYAAEVLAillqasaqnrsRYIDADGVDTLLQLLSA 321
                 34555.4555689*********999887666555556699******9975 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00018      0.83       8      39 ..     163     194 ..     156     196 .. 0.82
   2 !    5.1   0.0    0.0057        26       9      23 ..     307     331 ..     299     345 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00018
                 HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm   8 vieaGavppLvrLLssedeevqeeAawALsNL 39 
                   ++G+v  L++LLs+e++++  +A   ++ L
  KKY18044.1 163 FAKLGCVGSLISLLSHENTDIAIAAIEVIGEL 194
                 5689*****************99988777765 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0057
                 HHTTHHHHHHHHTT..........T CS
         Arm   9 ieaGavppLvrLLs..........s 23 
                 i+a +v+ L++LLs          s
  KKY18044.1 307 IDADGVDTLLQLLSayrkrdppkdS 331
                 99***********966655544444 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1    0.0047        21     379     421 ..     172     214 ..     169     216 .. 0.91
   2 ?    9.2   0.1   0.00013      0.59       7      79 ..     226     306 ..     221     344 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0047
     MMS19_C 379 LlqaLdlpdaevkastLetlksileespslvsehlssLvprLL 421
                 L+  L+ +++++  +++e++ ++++e+ ++ + + s Lv+ +L
  KKY18044.1 172 LISLLSHENTDIAIAAIEVIGELIDEDVDAEDNQWSVLVEAML 214
                 556689**********************************999 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00013
     MMS19_C   7 Lpdsaseasasa..yervLeaLaelssekqlfetlvi..rllnkldlvlksnes....saayahailstllkllekkqtdl 79 
                 L  ++++ +a++  + +vL++++ lss++ + e + +   +++ l++ ++++es    + +ya  +l  ll++ +++ +  
  KKY18044.1 226 LARFDEKDEADRngVYHVLSVIENLSSQSTIAEKTGRnsSIISWLSARIQQAESpvgqNRQYAAEVLAILLQASAQNRSRY 306
                 5555555544445699*******************9988899999888888888899999***********9999988333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.50
# Mc/sec: 3466.76
//
Query:       KKY18045.1  [L=1268]
Description: putative dna-directed rna polymerase ii 138 kda polypeptide [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   9.5e-122  406.8   0.2   1.8e-121  405.9   0.2    1.5  1  RNA_pol_Rpb2_6  RNA polymerase Rpb2, domain 6
    5.7e-56  189.3   0.0    1.3e-55  188.0   0.0    1.6  1  RNA_pol_Rpb2_1  RNA polymerase beta subunit
    6.8e-38  130.2   0.0    1.2e-37  129.5   0.0    1.4  1  RNA_pol_Rpb2_2  RNA polymerase Rpb2, domain 2
    1.9e-33  114.7   0.0    3.9e-33  113.7   0.0    1.6  1  RNA_pol_Rpb2_7  RNA polymerase Rpb2, domain 7
    1.8e-25   88.9   0.0    4.2e-25   87.7   0.0    1.7  1  RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3
    1.6e-21   76.6   0.6    5.1e-21   75.0   0.6    2.0  1  RNA_pol_Rpb2_5  RNA polymerase Rpb2, domain 5
    1.5e-19   70.1   0.1    4.2e-19   68.6   0.1    1.9  1  RNA_pol_Rpb2_4  RNA polymerase Rpb2, domain 4
  ------ inclusion threshold ------
      0.065   13.1   0.9       0.16   11.9   0.9    1.7  1  RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
      0.074   13.8   0.2       0.16   12.7   0.2    1.5  1  MRNIP           MRN-interacting protein


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb2_6  RNA polymerase Rpb2, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  405.9   0.2  9.1e-125  1.8e-121       1     390 []     791    1164 ..     791    1164 .. 0.93

  Alignments for each domain:
  == domain 1  score: 405.9 bits;  conditional E-value: 9.1e-125
                      HHHT-SS-TTB-HHHHHHHHHHGGGB-S---TTTTT---SSEEEESS----SSB-S.TTTTTS........GGGS-SEEEEEBBBS--TTTTT CS
  RNA_pol_Rpb2_6    1 vaklapvvehvqspriiiqaamekqalgiyslnkfkrsnqktyllcinqkPlvktgdkveagqvldgpatekgelalGqnavVAvmsyeGYni 93  
                      +a+++p+++h+qspr+++q+am+kqa+gi  +n  +r+++  ++l+++qkPl +t  ++e+++        + el++Gqna+VA+++y+GYn+
      KKY18045.1  791 CASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFDQRMETMANILYYPQKPLATTA-SMEYLK--------FRELPAGQNAIVAIACYSGYNQ 874 
                      6999****************************************************.******........********************** PP

                      TT-EEEBCHHHHTTTT-EEEEEE..EEE--SSSS---.-S--..-......-SS-GGGS-TTSB--SS-EEETT-EEE---..B-----...- CS
  RNA_pol_Rpb2_6   94 EDaiilnerlvdrdvftsihikeyeveardtklgeeeitrdipnv......seealkkLdedGivrvgaevkegdilvgkvtkgeteltpeek 180 
                      ED++i+n++++dr++f+s+++++y+ + +   ++  e+++++++       +++ ++k+dedGiv +g +v+ +di++gk+   +  + p+ +
      KKY18045.1  875 EDSVIMNQSSIDRGLFRSLFYRTYQDQEKMVGHSLVETFERPSRAdtlrikNNSTYDKIDEDGIVAPGVRVSGDDIIMGKT--AP--MAPDAE 963 
                      ***********************55555444444466666666667888888899*************************8..44..444444 PP

                      ----------..-B---EE--TT-EEEEEEEEE.......EE-TT--EEEEEEEEEEE---TT-BEEETTS---BBEEEB-TTTSEEETTS-- CS
  RNA_pol_Rpb2_6  181 llraifgekarevkdtslrvksgeegvVdkvkvfsrekgdelkagvnklvkvyvaqkRklqvGDKfasrhGqKGvvslilpqeDmPfledGiv 273 
                      +l + +  k++ ++d s+ ++s+e+g+Vd+v +       +++ ++ ++ kv+v++++ +qvGDKfasrhGqKG+++++++qeDmPf+++G+v
      KKY18045.1  964 ELGQRT--KQHVKRDVSTPLRSTENGIVDQVLL-------TTTGEGLRFSKVRVRTTKIPQVGDKFASRHGQKGTIGVTYRQEDMPFTREGVV 1047
                      454433..33336899*****************.......899999*********************************************** PP

                      -SEEE-GGGCHHH-BTTHHHHHHHHHCCCSSSS--B--TT-...-HHHHHHHHHTTS-TT-EE-EEETTTS-B-SS-EEB-EEEEEEBS--CC CS
  RNA_pol_Rpb2_6  274 vDivlNPlgvPSRmtigqllEtllgkaaalegkkvdatvFdgakeeeikelLeeagleasGkevlydGrtGekleaeifvGviYylkLkhlve 366 
                      +D+++NP+++PSRmti++l+E+ l+k+a l+g++ dat+F++ + ++i+++L+  g++++G ev+y+G tG+kl a++f+G++Yy++L+h+v+
      KKY18045.1 1048 PDLIVNPHAIPSRMTIAHLIECQLSKVATLRGFEGDATPFSQVTVTNISKTLRGLGYHSRGFEVMYNGHTGRKLMAQVFFGPTYYQRLRHMVD 1140
                      *****************************************9999************************************************ PP

                      CS----SS--B-TTT--B-SCGGG CS
  RNA_pol_Rpb2_6  367 dKihaRstGpyslltqQPlgGkaq 390 
                      dKih+R++Gp++ lt+QP++G+a+
      KKY18045.1 1141 DKIHSRARGPTQILTRQPVEGRAR 1164
                      **********************96 PP

>> RNA_pol_Rpb2_1  RNA polymerase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.0   0.0   6.7e-59   1.3e-55       1     202 [.      45     481 ..      45     482 .. 0.97

  Alignments for each domain:
  == domain 1  score: 188.0 bits;  conditional E-value: 6.7e-59
                     CTTHHHHHHHHHHHHTHHHHHCTTSSECCHCSSSHCSSSC........EEEEEEEEEEESCSSECTTSCEEES.HHHHHHCTSBXEEEEEEEEEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1   1 gLvsqqldSFnkfveqdlekiikeeaaieseeeiqssgee........lelkfvsirlgkPvvdesdasereiyPkearlrnltYsaplyvklkl 87 
                     gLvsqq++SFn+f+++++++ ++e+  +++++    +  +         e+kf++i+l++P+++e d+++++++P+earlrnltYs+++y++++ 
      KKY18045.1  45 GLVSQQIESFNNFMRTTMQELVDEHGGVTLDQAVPVNDMDpnpvvikrHEVKFGKISLANPSITEGDGTTTDLMPNEARLRNLTYSSAIYLSMQR 139
                     69***************************9998765555578999999*********************************************98 PP

                     EECCCC..........................TCCEEEEEEEEEEEEEXBTTSTTSSSTT....S.HHHHHHTTS.TTS..SSEEETTCEEEEXE CS
                     xxxxxx..........................xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1  88 vvyekd..........................nkeeikeeevyiGelPlMlrskacvlse....aseeelvelkEcpldqGGyFiinGtekviva 152
                     ++  +                            +ee +++++++G++P+Ml+s++c+l      +s+++l + +Ecp+d GGyFiinG+ekv++a
      KKY18045.1 140 KMHVARerpevgaeetgvvdahgnelywtqedLGEEGQPQDIFLGKVPVMLKSSTCHLVSgdrfQSDKDLFAWGECPYDSGGYFIINGSEKVLIA 234
                     87655569*********************9998999**********************763444689**************************** PP

                     EEE............................................................................................ CS
                     xxx............................................................................................ RF
  RNA_pol_Rpb2_1 153 qek............................................................................................ 155
                     qe+                                                                                            
      KKY18045.1 235 QERsagnivqvfkkampspirylaeirssietgsrmlsqcsvklfgsgeggshsriqnpiriqlpyirqdipmaivfralgvvpdaeiiekicfd 329
                     *********************************************************************************************** PP

                     ............................................................................................... CS
                     ............................................................................................... RF
  RNA_pol_Rpb2_1 156 ............................................................................................... 155
                                                                                                                    
      KKY18045.1 330 hndremmdmlmgslqeasliqemdlaldyigrrgqnpnlrgqerrqhaldilqkellphigqgavegnelrkayflgyminrmlkcalgrtepdd 424
                     *********************************************************************************************** PP

                     ..........XHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSSSHHHHSCSHHHH CS
                     ..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1 156 ..........laGeLlaslfrvllkklerdvkerlqksleklddlmlqllvnakpit 202
                               laG+L+a+lfrv+++k+++d+ +++q+++e+ +d+ l++ ++++ it
      KKY18045.1 425 rdhmgkkrldLAGPLMANLFRVQFQKVTKDLFRYMQRQVESDRDIVLKVGLKSNIIT 481
                     *******************************************************98 PP

>> RNA_pol_Rpb2_2  RNA polymerase Rpb2, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.5   0.0   5.8e-41   1.2e-37       3     190 .]     241     434 ..     239     434 .. 0.80

  Alignments for each domain:
  == domain 1  score: 129.5 bits;  conditional E-value: 5.8e-41
                     SCEEEEE-SSSSSE..................SSSCCEECCCEEEEECCCCSTSCEEEEECTTSSSEEEHHHHHHHTT--STTHHHHHHTSSSTT CS
  RNA_pol_Rpb2_2   3 ngiyvekekdknki..................satvtsslisqrgsvlklekdgktliwtriskkrkipivivlkAlglvsdreIlericydsed 79 
                     n+++v+k++ ++ i                  +    s++  ++g      + ++ +++ +++++++ip++iv++Alg+v d eI e+ic d +d
      KKY18045.1 241 NIVQVFKKAMPSPIrylaeirssietgsrmlsQC---SVKLFGSGEGGSHSRIQNPIRIQLPYIRQDIPMAIVFRALGVVPDAEIIEKICFDHND 332
                     6777777777777777777777766663332111...122222333333344467788999********************************** PP

                     HHHHHHHHHHHHHHCTSSSCHHHHHHHHHCSSTTSSSCCCCCHHHHHHHCHHHHHHHTTTTSSTTTTTSSSTCHH...HHHHHHHHHHHHHHHHT CS
  RNA_pol_Rpb2_2  80 sqlleelleeleekeeiqtqeealdyigkvvalrrgeearlqsareilqkrydlgeigreklnkhlglseslenkr.lkaqdilymidrLlslkl 173
                      +++++l+ +l+e++ iq+ + aldyig+     rg++++l+ +++    + +l+++++e l+ h+g+    e +   ka++++ymi+r+l+++l
      KKY18045.1 333 REMMDMLMGSLQEASLIQEMDLALDYIGR-----RGQNPNLRGQERR---QHALDILQKELLP-HIGQGAV-EGNElRKAYFLGYMINRMLKCAL 417
                     ****************************6.....6666666666643...4678*********.*****99.666669***************** PP

                     TSSSS--TTSGGGEEEE CS
  RNA_pol_Rpb2_2 174 grrevDDiDhlgnkRvr 190
                     gr e+DD+Dh+g+kR++
      KKY18045.1 418 GRTEPDDRDHMGKKRLD 434
                     ***************96 PP

>> RNA_pol_Rpb2_7  RNA polymerase Rpb2, domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.7   0.0     2e-36   3.9e-33       1      86 [.    1166    1258 ..    1166    1259 .. 0.97

  Alignments for each domain:
  == domain 1  score: 113.7 bits;  conditional E-value: 2e-36
                      BBEEEEHHHHHHHHHHTBHHHHHHHHTTTTTEEEEEEESSSSSCCCEE.......EBTTTTCSSSEEEEEEEHHHHHHHHHHHHTTBEEEEES CS
  RNA_pol_Rpb2_7    1 GGlrfGEMErdaliayGaaalLkerltikSDavevdvcgrckllaaan.......eCkivkseekiekveipeafklLlqeLqslgialklll 86  
                      GGlrfGEMErd++ia+Ga+++Lkerl++ SD ++v+vc+ c+l++ ++       eC+ +++++ki++v+ip+a+klL+qeL s++ia ++++
      KKY18045.1 1166 GGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHVCDICGLMTPVAklkkntfECRACQNKNKISQVHIPYAAKLLFQELASMNIAARMFT 1258
                      9*******************************************9988899*************************************99976 PP

>> RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   2.1e-28   4.2e-25       1      68 []     508     572 ..     508     572 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 2.1e-28
  RNA_pol_Rpb2_3   1 qvldrlnplselshlrrvsslrgglskerkttevRdlhpshwGriCpveTPEGencGlvksLallarv 68 
                     qvl r+++ s+lshlrr +++   + ++ k +++R+lh++hwG+iCp+eTPEG+ cGlvk+Lal++ v
      KKY18045.1 508 QVLSRYTFASTLSHLRRTNAP---IGRDGKIAKPRQLHNTHWGYICPAETPEGQACGLVKNLALMSTV 572
                     89*******************...*****************************************976 PP

>> RNA_pol_Rpb2_5  RNA polymerase Rpb2, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.6   2.6e-24   5.1e-21       1      58 []     715     784 ..     715     784 .. 0.93

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 2.6e-24
                     HHHHHHTTSEEEEEHHHHTT--EESSTTTCSST-SSTTTSS-............-TTSSSST-SEEES-G CS
  RNA_pol_Rpb2_5   1 wddLlregvvEylDaeEEetamIamtpedleksreekealee............kenskshtyTHcEIhP 58 
                     w++Ll+eg+vEylDaeEEetamIamtp dl++s e ++++                n++sh +THcEIhP
      KKY18045.1 715 WQQLLEEGIVEYLDAEEEETAMIAMTPMDLQTSLEVRQGWVIepsddplhrvepLLNPSSHSFTHCEIHP 784
                     *********************************6666666668**********999999**********9 PP

>> RNA_pol_Rpb2_4  RNA polymerase Rpb2, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.1   2.1e-22   4.2e-19       1      62 []     607     669 ..     607     669 .. 0.95

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 2.1e-22
                     EECTT-BEEE-S.-HCCHHHHHHHHCCTTSS-TT-EEEE-TTT--EEEE-SSEEB-EEEEE-S CS
  RNA_pol_Rpb2_4   1 VfvNGrllGvtr.dpkklvetlRelRRkgkiseevsivlnekqkevkiatDgGRvcRPliiVe 62 
                     +f+NG++++v+r dpk+lv+t+++lRR+g i+ ++s v+++++ke +i+ D+GR++RPl+iV+
      KKY18045.1 607 IFLNGVWFAVVReDPKSLVDTFKRLRRRGMIDWQMSLVWDIRDKEFRINMDAGRIIRPLFIVN 669
                     7********975278**********************************************95 PP

>> RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.9   7.9e-05      0.16      11      34 ..    1208    1232 ..    1203    1234 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.9e-05
                      EEEEECSCCCE.EEESSSS-EEESS CS
  RNA_POL_M_15KD   11 Llpkedkegkn.feCrqCgYeepad 34  
                      L  +++k++kn feCr C+ +  ++
      KKY18045.1 1208 LMTPVAKLKKNtFECRACQNKNKIS 1232
                      667899************9876665 PP

>> MRNIP  MRN-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   7.9e-05      0.16       4      53 ..    1203    1252 ..    1200    1263 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.9e-05
       MRNIP    4 CysCetfqvkqvkKskkwkCkvCnekqslkkvygsgsgkdcrqlVqklnl 53  
                  C  C ++    + K+++++C+ C++k ++ +v+  +++k + q   ++n+
  KKY18045.1 1203 CDICGLMTPVAKLKKNTFECRACQNKNKISQVHIPYAAKLLFQELASMNI 1252
                  666777776677889*****************999999877777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.49
# Mc/sec: 7778.14
//
Query:       KKY18046.1  [L=995]
Description: putative mitochondrial exoribonuclease cyt [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-46  157.1   0.0    4.8e-45  154.3   0.0    2.1  1  RNB       RNB domain


Domain annotation for each model (and alignments):
>> RNB  RNB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.3   0.0   2.7e-49   4.8e-45       1     325 [.     499     846 ..     499     847 .. 0.82

  Alignments for each domain:
  == domain 1  score: 154.3 bits;  conditional E-value: 2.7e-49
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB   1 RkdlrdllvitIdpedakdlDdAisieklpng..nyelgVhIADvshyvkegspldkearkratsvyLpekvvpMLPqelsedlcSLnpgedrlalsvl 97 
                 Rkdl dl+v++Id+++++++Dd++sie+  +     +l++hIAD+s ++ +++ ++++a++  +++y  e +  M+P     d cSL p+++ l++s+l
  KKY18046.1 499 RKDLGDLPVFCIDSASTTEVDDGFSIEPHLESpeLKWLHIHIADPSAFISPYDTVARHAERALSTTYTVEYNARMMPAPALIDKCSLSPNRPALTISAL 597
                 9*************************96553344899****************************************9988889*************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............................................xxxxxx.. RF
         RNB  98 idvdekgevlsveiylsvIkskarltydevqdlleqkdekeekk...............................................taedLe.. 147
                 + +d  g++++v++++++++++ +lt+d++q+ +  + e++  +                                                       
  KKY18046.1 598 LGMD--GSLKDVKVQPTIVQNVVKLTPDQLQREIWIPVESK--ElftvgdyspamsseedaswktyigdikavldvaaahlqckrdhpdylP----Asn 688
                 ****..99*************************96555433..2579******************888888888886666666666555552....033 PP

                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 148 ..llyelakalrkkRlkkgalefdspeikllldedkg........nrielkveeetk.ahslveelmllANelvArflseleipailriheepsnekle 235
                    l++++ ++++ R+  +al+f+ ++ + ++d+  +         +   + + ++  +  lv+e+m +A e+vA +++++  p+++ + +e    +++
  KKY18046.1 689 dfPLQTVSAVVQNARY--EALDFS-KSHHNRVDPAIRlisrrlacDPP-KQYSPHNVaSSNLVAEVMQIAGEAVALWCKKRDLPIVFSGTKESGDWSVQ 783
                 3367788888888884..457773.33333333322233323333322.344445555999************************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 236 dliklakklglklednsskknlqeslekleeeeaeqllselllrllkeakyssepvgHfgLaleeYthfTSPirRYpDlvvhrllkalla 325
                  ++++ +                 s +  ++           ++  + a+ ss+pv+H  +++++Y+++TSP+rRY Dl+ h++++a l+
  KKY18046.1 784 RIQEYHR-----------------SSQGARD----------ARQNWPTAICSSSPVPHHYIGVDQYARVTSPLRRYGDLISHWQINAQLR 846
                 *****99.................1222222..........35789***************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (995 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.53
# Mc/sec: 5691.96
//
Query:       KKY18047.1  [L=741]
Description: putative zn 2cys6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.51   10.0   2.7          1    9.0   2.7    1.5  1  RecR      RecR protein


Domain annotation for each model (and alignments):
>> RecR  RecR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.7   5.8e-05         1      11      32 ..      27      48 ..      26      49 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 5.8e-05
                HHHHH-EE-TTT--EESSSS-C CS
        RecR 11 eakekvrhCsrCgnlteedlCa 32
                +++++v +C++C n  +++lC+
  KKY18047.1 27 KVCDRVIPCKNCVNRKTSELCS 48
                689******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.55
# Mc/sec: 4067.40
//
Query:       KKY18048.1  [L=1214]
Description: putative histidine kinase hhk5p [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-26   91.8   0.5    5.7e-26   90.9   0.5    1.5  1  Response_reg  Response regulator receiver domain
    3.9e-23   82.1   0.2    6.6e-18   65.3   0.0    2.5  2  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    6.9e-13   48.4   0.0    1.9e-12   47.0   0.0    1.8  1  HisKA         His Kinase A (phospho-acceptor) domain
    5.9e-05   23.0   1.5    0.00013   21.8   1.5    1.6  1  dCache_1      Cache domain
    6.7e-05   23.2   0.0       0.15   12.5   0.0    2.7  2  HAMP          HAMP domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.5   1.6e-29   5.7e-26       1     111 [.    1018    1133 ..    1018    1134 .. 0.93

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 1.6e-29
                    EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHH.....HHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHH CS
  Response_reg    1 vlivdDdplvrellrqlleeegyeevaeaedgkealell.....keekvdlillDinmpgmdGlellkeireedpelpviiltahseeedaveal 90  
                    vl+++D++++++++ ++l+ e++ +v +a+dg+eal+++     + +k+dli++Di+mp++dG++ +k+ire     p+++lta see+++ e+l
    KKY18048.1 1018 VLVAEDNKVNQQVVLRMLKLEEIYDVIVAKDGQEALDIVrdsmsNGQKFDLIFMDIQMPNLDGIQSTKRIREMGFRAPIVALTAFSEESNVRECL 1112
                    89*****************65555***************766555566*********************************************** PP

                    HCTESEEEESSG-HHHHHHHH CS
  Response_reg   91 kagaddflsKpfdpeeLlkal 111 
                    + g+ddf+ Kp+++ +L++ +
    KKY18048.1 1113 SSGMDDFMPKPIKRPQLKAVI 1133
                    *****************9987 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   1.1e-05     0.041       1      55 [.     695     746 ..     695     780 .. 0.68
   2 !   65.3   0.0   1.8e-21   6.6e-18      36     110 ..     824     899 ..     782     900 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.1e-05
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEE.SSSSSTTHHHT CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikaseddlvisveD.nGiGipkedlk 55 
                 gd+ r+ q+++nl +N++kf++  g i+++++     + ++ve  +  G  k  l+
  KKY18048.1 695 GDKNRILQVLINLTSNSLKFTPAHGVIDIRVR----CVGLEVESqSKNGSRKGSLQ 746
                 7999****************889999999999....55555555333344444444 PP

  == domain 2  score: 65.3 bits;  conditional E-value: 1.8e-21
                 TEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEEEEEEES CS
   HATPase_c  36 ddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttftftlpl 110
                   ++++v+D+G+Gip+++++++fe+f+q d + + ++ggtGlGlsi+ +l+ lmgG+i+++s+ g G+tf +++pl
  KKY18048.1 824 LAFEFEVQDTGPGIPESQQQRVFEPFVQgDLGLSKKYGGTGLGLSICAQLAGLMGGTISLKSTVGLGSTFCMRIPL 899
                 56789***********************98899999************************************9997 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   5.3e-16   1.9e-12       1      64 [.     558     620 ..     558     623 .. 0.92

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 5.3e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHH.HHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCH CS
       HisKA   1 slgrflagvaHELrtPLsailgnaea.LkregklteelkeyletiesearrldhlvedlLdlsri 64 
                 s++ f+a+++HEL+tPL++ilg++ + ++++     + +  l +i ++++ l+hl+ dlL++s+ 
  KKY18048.1 558 SKTLFIANISHELKTPLNGILGMCAVsMQDT--DLKRIRHSLGVIYKSGDLLLHLLTDLLTFSKN 620
                 6899**********************67884..6689999***********************95 PP

>> dCache_1  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   1.5   3.7e-08   0.00013       9     247 ..      42     372 ..      39     374 .. 0.65

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 3.7e-08
    dCache_1   9 eqllglaeqlanniedvldslenlaetlasnpslqdlleepnra...neasreslqallksilksn................................. 71 
                  +l  +a ++a+++ ++l   ++++e +++ + +q++l+ +n+    + ++ +++q+ l+s l+s                                  
  KKY18048.1  42 SNLALTASLKAAQVAAYLLLFKTSTEGISTRILIQNALQRYNNVgnnTDENWSRAQSDLESALSSGenspvllqamilprddsgpggsyglvnvtadgv 140
                 578899************99999********************99994444556666666666555555566665555554444544444444333211 PP

    dCache_1  72 pdisgvylvdadGqviassdpssppnleg..........................tddpadrdwykealaggg......gkpvisdpyvdqtggkpvit 138
                  +  ++ +++++G                                              a+  +y       +        +++  p+  ++ + + ++
  KKY18048.1 141 YGTVELPWLYPSGS--------------HvilgdaglgyppnlypnltyhdvavnSTYNASHAYY-------EgfeisqDAVLVLGPWATNA-SFSLMS 217
                 11124555555555..............3333333343444444577754444431222222233.......13344446888888997777.889999 PP

    dCache_1 139 iavpiyd..dsg.kfiGvlaadldldnlqdllsni.klgetgyvfivd..sdGniiahpd....kdl.............lgknlrdelkaq....... 207
                 +++ + +    +  ++G++++ l+ d + +++++   l+etg+v++v+  +++n++a       +d               +++l++ ++a+       
  KKY18048.1 218 LTMSMNNntS-RsDILGYITVVLNVDLIVSIVKSPeGLDETGEVLMVGpdRNNNLFAQEPrigdPDSvqdqevrfvlpppSNSTLGNRHTARaydggns 315
                 9999998633.3489******************555**********98524556666522343333366668888888887777777777778888888 PP

    dCache_1 208 ................ealekalakiesgvssvklngeeylva.yapip..tglgWylv 247
                                 ++ +ka+++    +s+   ++++   + ya+i+     +W lv
  KKY18048.1 316 slpflasqfpavvdalTKNNKAINNAGAIISTHNEQKKRVS-TgYAKINtnI-VDWVLV 372
                 88999999999997766666666665665665555556664.4599999766.788877 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0012       4.2       2      19 ..     409     426 ..     409     443 .. 0.91
   2 !   12.5   0.0   4.1e-05      0.15      34      52 ..     510     528 ..     504     529 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0012
                 HHHTTHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarr 19 
                 +a++ +rP+r+L++a+++
  KKY18048.1 409 IAHYGVRPIRQLREATKK 426
                 6899***********987 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 4.1e-05
                 SSHHHHHHHHHHHHHHHHH CS
        HAMP  34 rDEiGeLarafNaMldrLr 52 
                 +DE+ +L  +fN+M+d+L+
  KKY18048.1 510 KDELTDLTGTFNEMSDELV 528
                 7****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1101  (0.0614089); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.53
# Mc/sec: 6872.21
//
Query:       KKY18049.1  [L=1341]
Description: putative two-component osmosensing histidine kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-41  138.7  16.5    3.2e-08   33.8   0.2    7.7  6  HAMP             HAMP domain
    2.4e-31  108.5   0.4    1.1e-30  106.4   0.1    2.4  1  HATPase_c        Histidine kinase-, DNA gyrase B-, and HSP90-
    4.3e-26   91.3   2.6    2.7e-25   88.7   1.4    2.8  2  Response_reg     Response regulator receiver domain
    1.8e-16   59.9   2.9      5e-16   58.5   0.1    3.4  3  HisKA            His Kinase A (phospho-acceptor) domain
     0.0025   18.0   0.0         27    5.0   0.0    5.3  5  DUF4279          Domain of unknown function (DUF4279)
      0.003   18.0  12.0         13    6.4   0.0    6.2  5  DUF1843          Domain of unknown function (DUF1843)
     0.0098   15.9   1.8          2    8.5   0.0    4.3  5  CMD              Carboxymuconolactone decarboxylase family
  ------ inclusion threshold ------
      0.017   15.4  46.2        1.1    9.6   0.4    9.2  7  DUF948           Bacterial protein of unknown function (DUF94
      0.027   14.7  31.7      0.062   13.5   0.2    7.5  7  Fib_alpha        Fibrinogen alpha/beta chain family
       0.12   12.6   0.5         32    4.9   0.0    4.8  4  NAAA-beta        beta subunit of N-acylethanolamine-hydrolyzi
       0.21   11.4   4.0       0.34   10.7   0.0    3.1  3  AdHead_fibreRBD  C-terminal head domain of the fowl adenoviru
        0.8    8.9   9.3          1    8.5   0.2    4.5  5  GLE1             GLE1-like protein
       0.87    8.4   2.7        2.2    7.1   2.7    1.7  1  LMBR1            LMBR1-like membrane protein
        0.9    9.0  14.4       0.48    9.8   0.2    5.0  5  DUF3829          Protein of unknown function (DUF3829)
        1.2    8.2   9.9       0.91    8.5   6.3    2.4  2  Atg14            Vacuolar sorting 38 and autophagy-related su
        1.3    9.1  13.0         34    4.5   0.0    6.6  7  PilJ             Type IV pili methyl-accepting chemotaxis tra
        2.3    8.5  19.1         12    6.1   0.0    6.5  7  BORCS6           BLOC-1-related complex sub-unit 6
        2.5    6.0  22.3     0.0057   14.7   0.9    3.9  3  Prominin         Prominin
        3.3    8.2  15.0        5.4    7.6   7.4    3.9  3  APG6_N           Apg6 coiled-coil region
          4    6.2   9.6       0.46    9.3   5.0    1.7  2  Fmp27_WPPW       RNA pol II promoter Fmp27 protein domain
        4.3    6.5   9.6        1.7    7.9   2.6    3.0  3  TMPIT            TMPIT-like protein


Domain annotation for each model (and alignments):
>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.023        19      10      52 ..     222     267 ..     219     267 .. 0.78
   2 !   33.8   0.2   3.8e-11   3.2e-08       2      52 ..     309     359 ..     302     360 .. 0.95
   3 !   27.1   0.0   4.8e-09   4.1e-06       2      53 .]     401     452 ..     400     452 .. 0.97
   4 !   27.8   0.1   2.8e-09   2.4e-06       2      52 ..     493     543 ..     492     544 .. 0.96
   5 !   33.7   0.1     4e-11   3.5e-08       2      51 ..     585     634 ..     584     636 .. 0.95
   6 !   16.1   0.1   1.3e-05     0.011      10      53 .]     685     728 ..     676     728 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.023
                 HHHHHHHHHHHTTTBTSST..CCT.TSSSHHHHHHHHHHHHHHHHH CS
        HAMP  10 LrrLaraarriaaGdldtr..lpv.sgrDEiGeLarafNaMldrLr 52 
                 Lr++   + ++a+Gdl+ r  +   + + Ei++  r++N+M+d+L+
  KKY18049.1 222 LREIGGIITQVANGDLSMRvqVHSsEMDPEIATFKRTINTMMDQLE 267
                 7777778899*********444444467999999999999999985 PP

  == domain 2  score: 33.8 bits;  conditional E-value: 3.8e-11
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 +a +++  +r++++++r++a+Gdl++ ++++ + Ei +L + +N+M+d+Lr
  KKY18049.1 309 MATNLTDQVREISTVTRAVAQGDLSQKVTTRAKGEIYDLQQIINTMVDQLR 359
                 57788899******************************************8 PP

  == domain 3  score: 27.1 bits;  conditional E-value: 4.8e-09
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLre 53 
                 +a++++  +r +a+++ ++a+Gdl++ ++ + + Ei eL  ++N+M+ +L++
  KKY18049.1 401 MANNLTTQVRDIATVTTAVARGDLTQKVTAECKGEILELKNTINDMVGQLQQ 452
                 78999*********************************************96 PP

  == domain 4  score: 27.8 bits;  conditional E-value: 2.8e-09
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 +a++++  +r++a+++ ++a+Gdl++ ++ + + Ei +L  ++N M+d+L+
  KKY18049.1 493 MANNLTTQVREIAAVTTAVANGDLSKKVTADVKGEILDLKLTINKMVDKLN 543
                 68999*******************************************996 PP

  == domain 5  score: 33.7 bits;  conditional E-value: 4e-11
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrL 51 
                 +a +++  +r ++ ++++iaaGdl++ ++v+ + Ei  L  ++N+M+drL
  KKY18049.1 585 MAQNLTSQVRGISNVTQAIAAGDLSKKIEVHAQGEILLLKVTINNMVDRL 634
                 57789999*****************************************9 PP

  == domain 6  score: 16.1 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHHH CS
        HAMP  10 LrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLre 53 
                 +r   + +++  +Gd+++ ++vs   E++eL r +N M+ +Lr+
  KKY18049.1 685 VRAFGEITDAATDGDFTKLITVSAAGEMDELKRKINKMVSNLRD 728
                 4444455566667*****************************96 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.1   1.3e-33   1.1e-30       1     108 [.     859     976 ..     859     980 .. 0.91

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 1.3e-33
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE..........EETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHT CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveika..........seddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelm 88 
                 gd+ rLrqii nlv+Na+kf t+ ge++v ik+          +e  +++ v+D+GiGi  ++l+++f+ f+q d+st+r+ ggtGlGlsi+k+lv+lm
  KKY18049.1 859 GDPFRLRQIILNLVGNAIKF-TERGEVKVFIKKspellqrcgvDEFAFEFIVSDTGIGIQADKLELIFDTFQQaDGSTTRRFGGTGLGLSISKRLVNLM 956
                 6889****************.***********8655554444334999999************************************************ PP

                 TTEEEEEEETTTEEEEEEEE CS
   HATPase_c  89 gGeiwvesepgrGttftftl 108
                 gG++wv+s+ g+G++f+ft 
  KKY18049.1 957 GGRVWVTSDYGHGSDFHFTC 976
                 ****************9975 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.2     1e+03      44     104 ..    1051    1105 ..    1009    1110 .. 0.73
   2 !   88.7   1.4   3.2e-28   2.7e-25       1     111 [.    1133    1247 ..    1133    1248 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.2
                    ESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEESSTSHHHHHHHHHCTESEEEESSG-H CS
  Response_reg   44 vdlillDinmpgmdGlellkeireed..pelpviiltahseeedavealkagaddflsKpfdp 104 
                    +d+i++D        le+++++r+ d  + +pv++l+   +   ++ al++g+  +++ p++ 
    KKY18049.1 1051 YDVIIVDS-------LETARKLRAMDefKYIPVVLLSPIVS-ISLKFALDLGIISYMTTPCKA 1105
                    55555553.......67888888877777788998885554.567788888888888877765 PP

  == domain 2  score: 88.7 bits;  conditional E-value: 3.2e-28
                    EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT.....TTSEEEEEESSTSHHHHHHHH CS
  Response_reg    1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed.....pelpviiltahseeedaveal 90  
                    +l+++D++++++l  ++le+ +  +v+++++g+eale + ++k+d++l+D++mp m G+e++ +ir+ +     + +p+i+ltah+   d+++++
    KKY18049.1 1133 ILLAEDNEVNQKLAVKILEKYKH-HVTVVNNGAEALEAVMKKKFDVVLMDVQMPIMGGFEATGKIRQYEketgaQRIPIIALTAHAMLGDREKCI 1226
                    89*********************.******************************************9996666666******************* PP

                    HCTESEEEESSG-HHHHHHHH CS
  Response_reg   91 kagaddflsKpfdpeeLlkal 111 
                    +a +d++lsKp++++++++ +
    KKY18049.1 1227 QAQMDEYLSKPLKQSQMIQTI 1247
                    *****************9986 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       5.5   4.7e+03      41      60 ..     337     356 ..     311     360 .. 0.73
   2 !   58.5   0.1   5.8e-19     5e-16       2      66 ..     747     811 ..     746     812 .. 0.96
   3 ?   -1.8   0.1         4   3.4e+03      20      56 ..    1211    1249 ..    1209    1257 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.5
                 HHHHHHHHHHHHHHHHHHHH CS
       HisKA  41 letiesearrldhlvedlLd 60 
                   +++ e+  l+++++++ d
  KKY18049.1 337 TTRAKGEIYDLQQIINTMVD 356
                 45566666688888888855 PP

  == domain 2  score: 58.5 bits;  conditional E-value: 5.8e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66 
                 +++fla+++HE+rtP+++i+g++++  ++++l +  +e+l+++++ a+ l+ +++d+Ld+s+iea
  KKY18049.1 747 KSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYPREMLNVVHNLANSLLTIIDDILDISKIEA 811
                 89***********************98888999******************************98 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 4
                  HHHHHHHH.HC.....T-HSSCHHHHHHHHHHHHHHHHHHH CS
       HisKA   20 ilgnaeaL.kre...gklteelkeyletiesearrldhlve 56  
                  i ++a+a+  ++   ++   +  eyl +  ++++ ++ +++
  KKY18049.1 1211 IALTAHAMlGDRekcIQ--AQMDEYLSKPLKQSQMIQTIIK 1249
                  55677886433333433..4555599999999999999986 PP

>> DUF4279  Domain of unknown function (DUF4279)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.96   8.2e+02      50      83 ..     253     286 ..     241     294 .. 0.85
   2 ?    0.4   0.0      0.87   7.4e+02      49      82 ..     344     377 ..     300     405 .. 0.85
   3 ?    5.0   0.0     0.032        27      49      84 ..     436     471 ..     426     502 .. 0.79
   4 ?   -0.4   0.0       1.5   1.3e+03      50      84 ..     529     563 ..     521     590 .. 0.83
   5 ?    2.9   0.0      0.15   1.3e+02      52      81 ..     623     652 ..     612     697 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.96
     DUF4279  50 ldleeqldklldrlepkaekikelakkygleiyl 83 
                  +++  ++++ d+le + +++ ++a++ g e +l
  KKY18049.1 253 ATFKRTINTMMDQLEVFGSEVSRVAREVGTEGVL 286
                 578899*******************998887766 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.87
     DUF4279  49 sldleeqldklldrlepkaekikelakkygleiy 82 
                  +dl+  +++++d+l  +a ++ ++a++ g e  
  KKY18049.1 344 IYDLQQIINTMVDQLRTFAFEVTRVARDVGTEGK 377
                 5799999***************999998777655 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.032
     DUF4279  49 sldleeqldklldrlepkaekikelakkygleiylq 84 
                  l+l++ +++++ +l+++a+++ ++ak+ g + +l+
  KKY18049.1 436 ILELKNTINDMVGQLQQFAQEVTKIAKEVGTDGVLG 471
                 578999*********************999888776 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 1.5
     DUF4279  50 ldleeqldklldrlepkaekikelakkygleiylq 84 
                 ldl+  ++k++d+l+ +a ++ ++a++ g + +l+
  KKY18049.1 529 LDLKLTINKMVDKLNMFAFEVSKVAREVGTDGVLG 563
                 5777889*****************99998887765 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.15
     DUF4279  52 leeqldklldrlepkaekikelakkyglei 81 
                 l+  ++ ++drl ++a ++k++a++ g++ 
  KKY18049.1 623 LKVTINNMVDRLANFARELKRVARDVGVDG 652
                 567899*****************9877654 PP

>> DUF1843  Domain of unknown function (DUF1843)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.015        13       6      44 ..     322     359 ..     321     365 .. 0.89
   2 ?    2.9   0.1      0.19   1.6e+02       6      43 ..     414     450 ..     412     460 .. 0.63
   3 ?    3.8   0.0     0.094        80       5      44 ..     505     543 ..     504     552 .. 0.73
   4 ?    5.3   0.1     0.033        28       8      29 ..     600     621 ..     597     635 .. 0.85
   5 ?    2.4   0.0      0.26   2.2e+02       7      41 ..     691     724 ..     689     732 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.015
     DUF1843   6 aiqqAiasGDLakMKalaaqaeqqLaeygdiasaleqLk 44 
                 + ++A+a+GDL++  ++ a+ e + + ++ i ++++qL+
  KKY18049.1 322 TVTRAVAQGDLSQKVTTRAKGEIY-DLQQIINTMVDQLR 359
                 5789*********99999999999.99999999999997 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.19
     DUF1843   6 aiqqAiasGDLakMKalaaqaeqqLaeygdiasaleqL 43 
                 + + A+a+GDL + K +a    + L+ +  i  ++ qL
  KKY18049.1 414 TVTTAVARGDLTQ-KVTAECKGEILELKNTINDMVGQL 450
                 7889*******98.444444445555555555555544 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.094
     DUF1843   5 vaiqqAiasGDLakMKalaaqaeqqLaeygdiasaleqLk 44 
                 +a + A+a GDL+k K +a    + L+ +  i +++++L+
  KKY18049.1 505 AAVTTAVANGDLSK-KVTADVKGEILDLKLTINKMVDKLN 543
                 68999*******97.5556666666777777777777765 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.033
     DUF1843   8 qqAiasGDLakMKalaaqaeqq 29 
                 +qAia GDL+k  +++aq e  
  KKY18049.1 600 TQAIAAGDLSKKIEVHAQGEIL 621
                 79*********99999998865 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.26
     DUF1843   7 iqqAiasGDLakMKalaaqaeqqLaeygdiasale 41 
                 i++A+ +GD  k+ ++ a+ e   + + +i ++++
  KKY18049.1 691 ITDAATDGDFTKLITVSAAGEMD-ELKRKINKMVS 724
                 89************999998865.55555555555 PP

>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       6.9   5.9e+03      18      43 ..     215     239 ..     206     246 .. 0.69
   2 ?   -0.5   0.0       1.5   1.3e+03      18      48 ..     310     339 ..     298     363 .. 0.82
   3 ?    2.2   0.0      0.22   1.9e+02      18      41 ..     402     425 ..     386     452 .. 0.80
   4 !    8.5   0.0    0.0023         2       3      39 ..     479     515 ..     477     522 .. 0.81
   5 ?   -0.9   0.0         2   1.7e+03      28      73 ..    1210    1256 ..    1197    1264 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.9
                 SSTS-HHHHHHHHHHHHHHTT-HHHH CS
         CMD  18 eggLdpkereLialavsaangceyCv 43 
                 +++  +++re+  + + +ang    +
  KKY18049.1 215 NEAFQKALREIGGIITQVANGDLS-M 239
                 556678888888888888888766.4 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.5
                 SSTS-HHHHHHHHHHHHHHTT-HHHHHHHHH CS
         CMD  18 eggLdpkereLialavsaangceyCvdaHtr 48 
                   +L+ + re+ +++ ++a+g    +++ tr
  KKY18049.1 310 ATNLTDQVREISTVTRAVAQGDLS-QKVTTR 339
                 3569999************99887.666665 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.22
                 SSTS-HHHHHHHHHHHHHHTT-HH CS
         CMD  18 eggLdpkereLialavsaangcey 41 
                  ++L+ + r ++++++++a+g   
  KKY18049.1 402 ANNLTTQVRDIATVTTAVARGDLT 425
                 355*****************9765 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0023
                 HHHHHHHHHHHHCC.GSSTS-HHHHHHHHHHHHHHTT- CS
         CMD   3 llraltalrealla.reggLdpkereLialavsaangc 39 
                 ++ ++ +l e++     ++L+ + re++a+++++ang 
  KKY18049.1 479 VQGTWKDLTENVNGmA-NNLTTQVREIAAVTTAVANGD 515
                 5667777777777744.56*****************97 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 2
                  HHHHHHHHHTT.-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHSH CS
         CMD   28 Lialavsaang.ceyCvdaHtraAleaGvteeeiaevlaqaaayagw 73  
                  +ial++ a++g +e C++a + + l + + + +  +++   +a+a+ 
  KKY18049.1 1210 IIALTAHAMLGdREKCIQAQMDEYLSKPLKQSQMIQTIIKVVAMAQL 1256
                  689999999998999***99999998888886655555555555443 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.4         3   2.6e+03      29      56 ..     169     196 ..     152     234 .. 0.51
   2 ?    6.6   2.1     0.011       9.2      40      79 ..     290     329 ..     241     338 .. 0.76
   3 ?    4.3   2.2     0.056        48      42      79 ..     384     421 ..     346     430 .. 0.78
   4 ?    6.0   6.6     0.017        14      23      79 ..     449     513 ..     425     522 .. 0.65
   5 ?    9.6   0.4    0.0013       1.1      39      78 ..     557     604 ..     526     614 .. 0.73
   6 ?    7.4   0.2    0.0062       5.3      25      78 ..     628     696 ..     620     698 .. 0.69
   7 ?   -0.9   0.1       2.4   2.1e+03      48      67 ..     711     730 ..     703     748 .. 0.54

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 3
      DUF948  29 deaaatieelekqvdpilkevedllakv 56 
                 ++ ++ +e++ +++++  + ++++l kv
  KKY18049.1 169 KSQKQVLEKVSEELHAQDQRTRNALVKV 196
                 2333333333333333333333333333 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.011
      DUF948  40 kqvdpilkevedllakvnelledvneklekvdplteavad 79 
                  q++++    ++l+++vn ++ ++++++ ++ ++t ava+
  KKY18049.1 290 AQITGVHGIWKELTENVNIMATNLTDQVREISTVTRAVAQ 329
                 6777777777899999999******************985 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.056
      DUF948  42 vdpilkevedllakvnelledvneklekvdplteavad 79 
                 +d++    ++l+  vn+++++++ ++ ++ ++t+ava 
  KKY18049.1 384 IDGVQGTWNELTISVNAMANNLTTQVRDIATVTTAVAR 421
                 667777788999999999999999***********984 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.017
      DUF948  23 klkktldeaaatieele........kqvdpilkevedllakvnelledvneklekvdplteavad 79 
                 +l++ ++e+++  +e++          v+ +    +dl+++vn ++++++ ++ ++ ++t+ava+
  KKY18049.1 449 QLQQFAQEVTKIAKEVGtdgvlggqATVHDVQGTWKDLTENVNGMANNLTTQVREIAAVTTAVAN 513
                 34444555555555555666666666666666666666677777777777788888888888764 PP

  == domain 5  score: 9.6 bits;  conditional E-value: 0.0013
      DUF948  39 e........kqvdpilkevedllakvnelledvneklekvdplteava 78 
                 +         +vd +    +dl+++vn++++++++++  + ++t+a+a
  KKY18049.1 557 GtdgvlggqAKVDDVEGRWKDLTDNVNTMAQNLTSQVRGISNVTQAIA 604
                 3455555557888889999999***********************976 PP

  == domain 6  score: 7.4 bits;  conditional E-value: 0.0062
      DUF948  25 kktldeaaatieele...............kqvdpilkevedllakvnelledvneklekvdplteava 78 
                 ++++d++a++ +el+                +v  ++   +++++ vn+++e+++ ++ +  ++t+a+ 
  KKY18049.1 628 NNMVDRLANFARELKrvardvgvdgkmggqANVADVSGRWKEITEDVNTMAENLTAQVRAFGEITDAAT 696
                 445555555555555555666688888887888888888888888888888888888888888888876 PP

  == domain 7  score: -0.9 bits;  conditional E-value: 2.4
      DUF948  48 evedllakvnelledvnekl 67 
                 e+++l +k+n++++++++ +
  KKY18049.1 711 EMDELKRKINKMVSNLRDSI 730
                 33333333333333333333 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   2.4      0.15   1.3e+02      83     119 ..     150     183 ..     102     195 .. 0.61
   2 ?   13.5   0.2   7.2e-05     0.062      34     113 ..     198     275 ..     190     281 .. 0.88
   3 ?    0.8   0.2      0.61   5.2e+02      56     104 ..     312     358 ..     291     369 .. 0.48
   4 ?    7.7   0.4    0.0043       3.7      52     116 ..     400     462 ..     392     466 .. 0.85
   5 ?    4.1   0.1     0.057        49      48     106 ..     488     544 ..     473     556 .. 0.77
   6 ?   -0.3   0.1       1.3   1.1e+03      50      82 ..     582     612 ..     565     648 .. 0.43
   7 ?    1.6   0.1      0.33   2.8e+02      24      60 ..     710     745 ..     705     797 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.15
                 HHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  83 skeleeeilrlketidaqesnirvLqnvlesneqkiq 119
                 s+   ++i+++++ +++q ++i+  ++vle+ +++++
  KKY18049.1 150 SE---DDISYIRDHLNRQAEQIKSQKQVLEKVSEELH 183
                 32...34555666666666666555555555555544 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 7.2e-05
                 CHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHH CS
   Fib_alpha  34 kkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvles 113
                 ++d++ le+el+++++ ++  ++  +ei  ++++  + +   +  ++  s+e++ ei+++k+ti++ + +++v  + +++
  KKY18049.1 198 NEDVSLLERELRKHQQANEAFQKALREIGGIITQVANGDL--SMRVQVHSSEMDPEIATFKRTINTMMDQLEVFGSEVSR 275
                 579999*************************987766665..899*************************9998777665 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.61
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHH CS
   Fib_alpha  56 elvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesni 104
                 +l+ +++++ + + + ++    + +k++++ + ei +l++ i++ + ++
  KKY18049.1 312 NLTDQVREISTVTRAVAQ--GDLSQKVTTRAKGEIYDLQQIINTMVDQL 358
                 333333333333333333..34444444444444444444444444444 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0043
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH CS
   Fib_alpha  52 keaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneq 116
                   a++l+++++d+ + + + ++    +++k++ e++ eil+lk+ti++ + ++++  + + +  +
  KKY18049.1 400 AMANNLTTQVRDIATVTTAVAR--GDLTQKVTAECKGEILELKNTINDMVGQLQQFAQEVTKIAK 462
                 5678999999999999999888..69************************999998777776655 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.057
                 CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHH CS
   Fib_alpha  48 snstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirv 106
                 +n +  a++l+++++++ + + + ++    + kk++ +++ eil+lk ti++ + +++ 
  KKY18049.1 488 ENVNGMANNLTTQVREIAAVTTAVAN--GDLSKKVTADVKGEILDLKLTINKMVDKLNM 544
                 45566678888888888887777776..7999******************999988775 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  50 stkeaeelvkeikdslrekqkskkdndnvikks 82 
                  ++ a++l+++++ + + +q+ ++    + kk+
  KKY18049.1 582 VNTMAQNLTSQVRGISNVTQAIAA--GDLSKKI 612
                 222223333333333333333333..2333333 PP

  == domain 7  score: 1.6 bits;  conditional E-value: 0.33
                 HCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHH CS
   Fib_alpha  24 dlllkyekdvkkdlekleneleeisnstkeaeelvke 60 
                 + +++ +++++k +++l++++++++   + ae l ++
  KKY18049.1 710 GEMDELKRKINKMVSNLRDSIQRNTAAREAAE-LANR 745
                 66888888888888888888888776655444.3333 PP

>> NAAA-beta  beta subunit of N-acylethanolamine-hydrolyzing acid amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.4   1.2e+03      24      57 ..     247     278 ..     244     281 .. 0.81
   2 ?    4.9   0.0     0.037        32      20      58 ..     427     463 ..     426     466 .. 0.85
   3 ?   -0.7   0.0       2.2   1.8e+03      17      37 ..     666     686 ..     664     708 .. 0.78
   4 ?   -0.8   0.0       2.2   1.9e+03      29      54 ..     782     802 ..     776     806 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.4
   NAAA-beta  24 dykpelksliqvlkdllkslvpgklvdlvdklaa 57 
                 +++pe++ ++++++ ++++l  + + + v ++a+
  KKY18049.1 247 EMDPEIATFKRTINTMMDQL--EVFGSEVSRVAR 278
                 789**************988..777777777766 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.037
   NAAA-beta  20 qvakdykpelksliqvlkdllkslvpgklvdlvdklaad 58 
                 +v +++k e+ +l+++++d++++l  + + + v k+a++
  KKY18049.1 427 KVTAECKGEILELKNTINDMVGQL--QQFAQEVTKIAKE 463
                 688899***************988..7788888887775 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.2
   NAAA-beta  17 RWtqvakdykpelksliqvlk 37 
                 RW+++  d  +   +l+  ++
  KKY18049.1 666 RWKEITEDVNTMAENLTAQVR 686
                 9***99998886666666555 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 2.2
   NAAA-beta  29 lksliqvlkdllkslvpgklvdlvdk 54 
                  +++ +v+++l++sl     ++++d+
  KKY18049.1 782 PREMLNVVHNLANSL-----LTIIDD 802
                 578999999999865.....445554 PP

>> AdHead_fibreRBD  C-terminal head domain of the fowl adenovirus type 1 long fibre
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.79   6.7e+02      28      68 ..     272     313 ..     251     335 .. 0.75
   2 ?   -2.9   0.1       5.8   4.9e+03      27      67 ..     455     496 ..     443     507 .. 0.77
   3 ?   10.7   0.0    0.0004      0.34      23      79 ..     543     599 ..     524     610 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.79
                      EEEEEEEEEEETTEEEEEEEEECCCCGS-S.SSHHHHC-EEE CS
  AdHead_fibreRBD  28 kvaaylrliaagGvlsttvkvdstagrtrk.vGasvedaikf 68 
                      +v+   r + + Gvl +  +++   g +++ + +++  a   
       KKY18049.1 272 EVSRVAREVGTEGVLGGQAQITGVHGIWKElTENVNIMATNL 313
                      68888999******************9997345666666555 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.8
                      EEEEEEEEEEEETTEEEEEEEEECCCCGS-S.SSHHHHC-EE CS
  AdHead_fibreRBD  27 akvaaylrliaagGvlsttvkvdstagrtrk.vGasvedaik 67 
                       +v+   + + + Gvl +   v    g ++  + +++  a  
       KKY18049.1 455 QEVTKIAKEVGTDGVLGGQATVHDVQGTWKDlTENVNGMANN 496
                      5677778899999*****999999999998724456555555 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.0004
                      TTEEEEEEEEEEEEEETTEEEEEEEEECCCCGS-S.SSHHHHC-EEEEEEE-GGGCCT CS
  AdHead_fibreRBD  23 stnaakvaaylrliaagGvlsttvkvdstagrtrk.vGasvedaikfavvvsppmdkd 79 
                      +  a++v+   r + + Gvl +  kvd   gr++  + ++++ a+  +  v   ++  
       KKY18049.1 543 NMFAFEVSKVAREVGTDGVLGGQAKVDDVEGRWKDlTDNVNTMAQNLTSQVR-GISNV 599
                      66799****************************9746899999999988776.55555 PP

>> GLE1  GLE1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.4      0.53   4.5e+02      27      61 ..     157     191 ..     147     221 .. 0.82
   2 ?    0.3   0.0      0.38   3.3e+02      17      97 ..     245     327 ..     231     330 .. 0.71
   3 ?    0.5   0.0      0.32   2.8e+02      17      98 ..     337     420 ..     328     424 .. 0.71
   4 ?    8.5   0.2    0.0012         1      12      93 ..     426     507 ..     416     531 .. 0.71
   5 ?   -1.0   0.0      0.94   8.1e+02      24      59 ..     712     746 ..     707     763 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.53
        GLE1  27 lkrkInpkvgQltnsseqlkkitkelkellesgkp 61 
                 ++   n++  Q+ ++++ l+k+++el++  +++++
  KKY18049.1 157 IRDHLNRQAEQIKSQKQVLEKVSEELHAQDQRTRN 191
                 5667899999****************987655555 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.38
        GLE1  17 dkelkkllgdlkrkInpkvgQltnsseqlkkitkel..kellesgkpvkvadk...pelaykyllnflAkalvsqaetevsakpea 97 
                 ++e+   + + kr In+ + Ql    ++++++++e+  + +l  + +++        ++ ++  +n++A +l +q+ +  +++ + 
  KKY18049.1 245 SSEMDPEIATFKRTINTMMDQLEVFGSEVSRVAREVgtEGVLGGQAQITG--VhgiWKE-LTENVNIMATNLTDQVREISTVTRAV 327
                 66777778899************9999****9999833456644444433..3335344.47778888888888888777776655 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.32
        GLE1  17 dkelkkllgdlkrkInpkvgQltnsseqlkkitkelkellesgkpvkvadk.....pelaykyllnflAkalvsqaetevsakpeaA 98 
                    +k  + dl++ In+ v Ql++ + +++++++++    + g +  + d      +e  +++ +n +A++l  q+   ++++++ A
  KKY18049.1 337 TTRAKGEIYDLQQIINTMVDQLRTFAFEVTRVARDVGTEGKLGGQA-IIDGvqgtwNE--LTISVNAMANNLTTQVRDIATVTTAVA 420
                 4567888899999999999999999999999999876554333332.23334565334..588888888888888888777776665 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0012
        GLE1  12 eqvkedkelkkllgdlkrkInpkvgQltnsseqlkkitkel..kellesgkpvkvadk....pelaykyllnflAkalvsqaetevsa 93 
                 +  k  +e k  + +lk  In  vgQl++ +++++ki+ke+  + +l  +   +v+d     +   ++  +n +A++l  q+ + +++
  KKY18049.1 426 Q--KVTAECKGEILELKNTINDMVGQLQQFAQEVTKIAKEVgtDGVLGGQA--TVHDVqgtwK-D-LTENVNGMANNLTTQVREIAAV 507
                 4..33789999****************************983234552222..3444433322.2.4555666666666666665555 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.94
        GLE1  24 lgdlkrkInpkvgQltnsseqlkkitkelkellesg 59 
                 + +lkrkIn+ v+ l+ s  q ++ ++e  el +++
  KKY18049.1 712 MDELKRKINKMVSNLRDSI-QRNTAAREAAELANRT 746
                 6689999999999999988.4445555555555444 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   2.7    0.0026       2.2     216     314 ..     142     235 ..      14     269 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0026
       LMBR1 216 keeaereledllkevkklrksisesdplrkyleeilkkvPeeiaeklksnenkteeslaklekqlikalqkrertekqwkrllekal.elediiknkss 313
                 +ee+ r ++   ++++++r+ ++++++  k  +++l+kv ee++ +    ++ t ++l+k e++  + l+++ r+++q +++ +kal e+  ii + ++
  KKY18049.1 142 EEETLRTVS--EDDISYIRDHLNRQAEQIKSQKQVLEKVSEELHAQ----DQRTRNALVKVENEDVSLLERELRKHQQANEAFQKALrEIGGIITQVAN 234
                 222222222..34555666666655555555566677776665555....8889999999999999999999999999999999993133334444443 PP

       LMBR1 314 k 314
                  
  KKY18049.1 235 G 235
                 3 PP

>> DUF3829  Protein of unknown function (DUF3829)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   1.1      0.61   5.2e+02     199     272 ..     158     226 ..     128     267 .. 0.59
   2 ?    3.7   0.1     0.043        37     215     278 ..     295     358 ..     256     360 .. 0.84
   3 ?    9.8   0.2   0.00057      0.48     190     279 ..     438     543 ..     424     544 .. 0.75
   4 ?   -2.4   0.0       3.1   2.6e+03     216     276 ..     572     632 ..     565     636 .. 0.68
   5 ?   -0.2   0.1      0.67   5.7e+02     214     277 ..     659     725 ..     624     728 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.61
     DUF3829 199 ekaleklekaskeekrkkpalesfkssakeflaaarkiirrirdkepysdsdkellksadsvegspeallrkyn 272
                 + +l++  +++k +k+   +le++ +++++  +  r+ + ++++ +  s  ++e l++ ++++++ ++ lr++ 
  KKY18049.1 158 RDHLNRQAEQIKSQKQ---VLEKVSEELHAQDQRTRNALVKVENEDV-SLLERE-LRKHQQANEAFQKALREIG 226
                 4455555555555554...5555555555555555555555555443.222212.2244444444444444444 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.043
     DUF3829 215 kkpalesfkssakeflaaarkiirrirdkepysdsdkellksadsvegspeallrkynelidey 278
                  +  + +++++++ + +++++ +r+i + + +  + +  +k   +++g   +l++ +n ++d+ 
  KKY18049.1 295 VHGIWKELTENVNIMATNLTDQVREISTVTRAVAQGDLSQKVTTRAKGEIYDLQQIINTMVDQL 358
                 677899**********************887666665444488899***************986 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00057
     DUF3829 190 klkkklddlekaleklekaskeekr................kkpalesfkssakeflaaarkiirrirdkepysdsdkellksadsvegspeallrkyn 272
                 +lk  ++d+  +l+++ +  ++ ++                 +  + +++++++++  ++++ +r+i+  +++  + +  +k   +v+g   +l   +n
  KKY18049.1 438 ELKNTINDMVGQLQQFAQEVTKIAKevgtdgvlggqatvhdVQGTWKDLTENVNGMANNLTTQVREIAAVTTAVANGDLSKKVTADVKGEILDLKLTIN 536
                 5555555555555555443333333355566677777799999**************************99888877666666777************* PP

     DUF3829 273 elideyN 279
                 +++d+ N
  KKY18049.1 537 KMVDKLN 543
                 *****99 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 3.1
     DUF3829 216 kpalesfkssakeflaaarkiirrirdkepysdsdkellksadsvegspeallrkynelid 276
                 +  + +++++++++ +++++ +r i + + +    +  +k+   ++g    l   +n+++d
  KKY18049.1 572 EGRWKDLTDNVNTMAQNLTSQVRGISNVTQAIAAGDLSKKIEVHAQGEILLLKVTINNMVD 632
                 5678999999999999999999999886655544433333555566666666666666666 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.67
     DUF3829 214 r...kkpalesfkssakeflaaarkiirrird.kepysdsdkellksadsvegspeallrkynelide 277
                 +    +  + +++++++++ ++++  +r   +  ++++d+d ++l +  s++g   +l rk+n++++ 
  KKY18049.1 659 NvadVSGRWKEITEDVNTMAENLTAQVRAFGEiTDAATDGDFTKL-ITVSAAGEMDELKRKINKMVSN 725
                 344466778888888888888888877755331334445554455.5566899999999999999976 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   6.3    0.0011      0.91      63     152 ..     134     220 ..      57     243 .. 0.83
   2 ?   -0.3   0.1      0.52   4.4e+02      39      74 ..     713     748 ..     703     779 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0011
       Atg14  63 knkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqiaklqdaikrieqklsslss 152
                   + ak  e  +l+  +++ ++ ++d+l ++ ++i+ +k+ l+k s++l    +    ++n l + +++ ++ l +++++++q ++++++
  KKY18049.1 134 AAREAKNGEEETLRTVSEDDISYIRDHLNRQAEQIKSQKQVLEKVSEELHAQDQ---RTRNALVKVENEDVSLLERELRKHQQANEAFQK 220
                 45555566667788888999*****************************74444...588999999999999999999999999888876 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.52
       Atg14  39 eslkkkiekalegkeeaeqledkiknkkakleelks 74 
                 ++lk+ki+k++++ +++ q++++++  ++ ++++ks
  KKY18049.1 713 DELKRKINKMVSNLRDSIQRNTAAREAAELANRTKS 748
                 455555555555555444444444444444433333 PP

>> PilJ  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.34   2.9e+02      39      75 ..      52      88 ..      43      99 .. 0.85
   2 ?    4.5   0.0      0.04        34      38     101 ..     209     272 ..     198     283 .. 0.85
   3 ?    2.0   0.0      0.23     2e+02      45      95 ..     311     362 ..     288     379 .. 0.78
   4 ?   -0.7   0.0       1.7   1.4e+03      45      95 ..     403     454 ..     394     470 .. 0.61
   5 ?   -0.1   0.1         1     9e+02      57     103 ..     449     497 ..     423     523 .. 0.58
   6 ?   -0.0   0.1         1   8.7e+02      78      96 ..     565     583 ..     494     605 .. 0.76
   7 ?    1.4   0.1      0.37   3.2e+02      41     103 ..     675     738 ..     653     748 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.34
        PilJ 39 daaearaqlretiaqfdrtlaalrlgdpapgllvpae 75
                +++ ++a+l+  +a+++r+++ l+ ++++ ++  p++
  KKY18049.1 52 EDSDEKAALETELAALARRIQYLEAKSDSVNQTLPDT 88
                577899*******************999988888865 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.04
        PilJ  38 ydaaearaqlretiaqfdrtlaalrlgdpapgllvpaeavraqleaveqlWqelkkpaeaalaq 101
                 +++++a ++ +++++++   +++ ++gd++++++v ++++ ++++   +  + +++++e   ++
  KKY18049.1 209 RKHQQANEAFQKALREIGGIITQVANGDLSMRVQVHSSEMDPEIATFKRTINTMMDQLEVFGSE 272
                 67899999*****************************9*****************999665555 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.23
        PilJ  45 aqlretiaqfdrtlaalrlgdpapgllvpae.avraqleaveqlWqelkkpa 95 
                 ++l+++++++ +  +a ++gd+++ + + a+ ++ +  + +++  ++l+  a
  KKY18049.1 311 TNLTDQVREISTVTRAVAQGDLSQKVTTRAKgEIYDLQQIINTMVDQLRTFA 362
                 5789999999999999999999988877777777777777777777777766 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 1.7
        PilJ  45 aqlretiaqfdrtlaalrlgdpapgllvpae....avraqleaveqlWqelkkpa 95 
                 ++l+ +++++++  +a ++gd+++ + +  +    +     + +++   +l++ a
  KKY18049.1 403 NNLTTQVRDIATVTTAVARGDLTQKVTAECKgeilE---LKNTINDMVGQLQQFA 454
                 678999999999999999999996444433363443...3333333333333333 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 1
        PilJ  57 tlaalrlgdpapgllvpae...avraqleaveqlWqelkkpaeaalaqqd 103
                 +l++ ++  ++    v ++     +a +++v+  W+ l +++ + +a+  
  KKY18049.1 449 QLQQFAQEVTKIAKEVGTDgvlGGQATVHDVQGTWKDLTENV-NGMANNL 497
                 333333333333222222234455777777777787777777.3333333 PP

  == domain 6  score: -0.0 bits;  conditional E-value: 1
        PilJ  78 raqleaveqlWqelkkpae 96 
                 +a++++ve +W+ l ++++
  KKY18049.1 565 QAKVDDVEGRWKDLTDNVN 583
                 6778888888888888873 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.37
        PilJ  41 aearaqlretiaqfdrtlaalrlgdpapgllvpae.avraqleaveqlWqelkkpaeaalaqqd 103
                 ++  ++l++++++f +  +a ++gd +    v a  ++ +   ++++  ++l++++++ +a+++
  KKY18049.1 675 NTMAENLTAQVRAFGEITDAATDGDFTKLITVSAAgEMDELKRKINKMVSNLRDSIQRNTAARE 738
                 5566889999999999999999999995555544455555555555555555555544333333 PP

>> BORCS6  BLOC-1-related complex sub-unit 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   1.3      0.58   4.9e+02      20      85 ..     108     184 ..     101     197 .. 0.67
   2 ?    0.2   0.1      0.91   7.8e+02      66      91 ..     300     325 ..     292     344 .. 0.79
   3 ?    2.0   0.9      0.26   2.2e+02       8      90 ..     309     416 ..     303     422 .. 0.55
   4 ?    4.7   1.2     0.037        32      56      91 ..     474     509 ..     398     524 .. 0.75
   5 ?    6.1   0.0     0.014        12      58      90 ..     568     600 ..     562     614 .. 0.92
   6 ?   -0.6   0.0       1.6   1.4e+03      58      90 ..     660     692 ..     656     697 .. 0.82
   7 ?   -3.0   0.0         9   7.7e+03      65      88 ..     712     735 ..     680     744 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.58
      BORCS6  20 ssvskkeessslsesstpsaslskqllaaq...........ipeidpnvlsd.lereaqkvaasvdnllenlssklhs 85 
                 s+ ++++ + + s+sst s +ls+ l a++           + e d + ++d l+r+a+++ +   ++le++s +lh 
  KKY18049.1 108 SRRQQRSPTRQGSSSSTRSLRLSNLLAAREakngeeetlrtVSEDDISYIRDhLNRQAEQIKS-QKQVLEKVSEELHA 184
                 443444446888888888888884444444444445555558888888887658899999854.46777777777775 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.91
      BORCS6  66 qkvaasvdnllenlssklhsisaltv 91 
                 ++++++v+ + +nl+ ++++is++t 
  KKY18049.1 300 KELTENVNIMATNLTDQVREISTVTR 325
                 56788888888888888888888874 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.26
      BORCS6   8 vaedLeekiklsssvskkeessslsesstpsasls.....................kqllaaq.........ipeidpnvlsdlereaqkvaasvdnll 76 
                 +a +L  +++  s+v++  ++ +ls++ t+ a+                                        +   + +++ ++   ++++ sv+++ 
  KKY18049.1 309 MATNLTDQVREISTVTRAVAQGDLSQKVTTRAKGEiydlqqiintmvdqlrtfafeV-----TrvardvgteGKLGGQAIIDGVQGTWNELTISVNAMA 402
                 677777777777776666665555554444433333455444444444444433321.....0222233331222234566667777788888888888 PP

      BORCS6  77 enlssklhsisalt 90 
                 +nl++++++i+++t
  KKY18049.1 403 NNLTTQVRDIATVT 416
                 88888888888777 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.037
      BORCS6  56 nvlsdlereaqkvaasvdnllenlssklhsisaltv 91 
                   ++d++   ++++++v+ + +nl++++++i+a+t 
  KKY18049.1 474 ATVHDVQGTWKDLTENVNGMANNLTTQVREIAAVTT 509
                 5688999999***********************996 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.014
      BORCS6  58 lsdlereaqkvaasvdnllenlssklhsisalt 90 
                 ++d+e + ++++++v+++ +nl+s+++ is +t
  KKY18049.1 568 VDDVEGRWKDLTDNVNTMAQNLTSQVRGISNVT 600
                 6899999***********************998 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 1.6
      BORCS6  58 lsdlereaqkvaasvdnllenlssklhsisalt 90 
                 ++d+  + +++++ v+++ enl+++++    +t
  KKY18049.1 660 VADVSGRWKEITEDVNTMAENLTAQVRAFGEIT 692
                 567778889999**********99998776665 PP

  == domain 7  score: -3.0 bits;  conditional E-value: 9
      BORCS6  65 aqkvaasvdnllenlssklhsisa 88 
                  +++ ++++++++nl+ ++++ +a
  KKY18049.1 712 MDELKRKINKMVSNLRDSIQRNTA 735
                 456667777778888777777765 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   7.7      0.46   3.9e+02     215     343 ..     154     321 ..     129     375 .. 0.34
   2 ?   14.7   0.9   6.7e-06    0.0057     257     411 ..     386     542 ..     378     553 .. 0.89
   3 ?   -0.7   0.7       0.3   2.6e+02     321     321 ..     686     686 ..     576     790 .. 0.52

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.46
    Prominin 215 LddagkhlgldladtlesnvlpaLael.erllenlkeakeqLeqvnk.....lekeL.................................rksgsqLrd 274
                 ++ + +hl  + a++++s+  ++L+++ e+l  + ++++++L +v++     le eL                                 +  +s++ +
  KKY18049.1 154 ISYIRDHLNRQ-AEQIKSQ-KQVLEKVsEELHAQDQRTRNALVKVENedvslLERELrkhqqaneafqkalreiggiitqvangdlsmrvQVHSSEMDP 250
                 44444443333.2233333.3444444223333344444444444331111122333000000000000000000000000000000000333344444 PP

    Prominin 275 glrgvkrdlnqalsn.lCqseeCskilssleie.kldtskcldqlpnvdevlealeevletnlssivkegl 343
                  +   kr +n+++ + +   +e s + +++ +e  l  ++++  ++ + ++l++  ++++tnl+ +v+e  
  KKY18049.1 251 EIATFKRTINTMMDQlEVFGSEVSRVAREVGTEgVLGGQAQITGVHGIWKELTENVNIMATNLTDQVREIS 321
                 44444444444444433322333333333322212333333333333333333333333333333333322 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 6.7e-06
    Prominin 257 qvnklekeLrksgsqLrdglrgvkrdlnqalsnlCqseeCskilssleiekldtskcl.dqlpnvdevlealeevletnlssivkeglarlneipekvk 354
                  v+ + +eL  s + + ++l+ + rd+ ++ + + +   ++k+  + + e+l++++++ d + +++++ ++++++ ++  +  v  g a++++++ + k
  KKY18049.1 386 GVQGTWNELTISVNAMANNLTTQVRDIATVTTAVARGDLTQKVTAECKGEILELKNTInDMVGQLQQFAQEVTKIAKEVGTDGVLGGQATVHDVQGTWK 484
                 6777889999******************99999777799*******************9999**********************************998 PP

    Prominin 355 nqtaevvpdlkkalakgreqikklakkip.realdavisdle.nterssktfddvveky 411
                 + t e v+ + ++l+++  +i  +++++   +  ++v+ d++ ++ +   t ++ v+k+
  KKY18049.1 485 DLT-ENVNGMANNLTTQVREIAAVTTAVAnGDLSKKVTADVKgEILDLKLTINKMVDKL 542
                 765.5678999999999999*****9999889999999999988887777777777765 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.3
    Prominin 321 d 321
                  
  KKY18049.1 686 R 686
                 1 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2      0.58     5e+02      55      81 ..      56      82 ..      45      91 .. 0.58
   2 ?    7.6   7.4    0.0063       5.4      12     113 ..     159     223 ..     128     233 .. 0.61
   3 ?    1.1   0.0      0.64   5.4e+02      46      84 ..     426     464 ..     396     467 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.58
      APG6_N 55 eleklekeeeelleeLkelekereele 81
                e ++le e ++l + ++ le++ ++++
  KKY18049.1 56 EKAALETELAALARRIQYLEAKSDSVN 82
                334444444444444444444444444 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0063
      APG6_N  12 eeldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreyne.lq 109
                 + l++q                                       e+++++++ l++  +el +++++ +++l + e+e   l e e r+ ++ ne +q
  KKY18049.1 159 DHLNRQ--------------------------------------AEQIKSQKQVLEKVSEELHAQDQRTRNALVKVENEDVSLLERELRKHQQANEaFQ 219
                 444455......................................5555555555555555555555555555555555555555555555555555444 PP

      APG6_N 110 lell 113
                   l 
  KKY18049.1 220 KALR 223
                 4433 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.64
      APG6_N  46 deeleeleeeleklekeeeelleeLkelekereeleael 84 
                 ++ ++e + e+ +l+++ ++++ +L++  +e  ++++e+
  KKY18049.1 426 QKVTAECKGEILELKNTINDMVGQLQQFAQEVTKIAKEV 464
                 446678888999999999999999999999999999986 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   5.0   0.00054      0.46     147     274 ..      87     214 ..      60     234 .. 0.73
   2 ?   -3.5   0.1       3.9   3.4e+03     220     244 ..     713     734 ..     666     761 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00054
  Fmp27_WPPW 147 k.......rispFgnektHdCilgkendpervqkelleeRleeleeqiekleekleelelksekedeelkeeieelekeikelkeklefletlledlke 238
                 +       ++spFg+e+      +++ +p + q +  + R  +l++ ++  e k +e e+ +  ++++++   ++l+++++++k+++++le++ e+l++
  KKY18049.1  87 DtpneyppPTSPFGKEENLTASRRQQRSP-TRQGSSSSTRSLRLSNLLAAREAKNGEEETLRTVSEDDISYIRDHLNRQAEQIKSQKQVLEKVSEELHA 184
                 22334444778************997766.77999999**********9999999999998888899999999************************99 PP

  Fmp27_WPPW 239 seesse.........eeeskskelsaastsesfseldelassees 274
                 ++++++         +                +   +el +++++
  KKY18049.1 185 QDQRTRnalvkveneD---------------VSLLERELRKHQQA 214
                 9985445554333320...............22222222333333 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.9
  Fmp27_WPPW 220 kelkeklefletlledlkeseesse 244
                 +elk+k+   ++++++l+ s ++++
  KKY18049.1 713 DELKRKI---NKMVSNLRDSIQRNT 734
                 3333332...222222222222111 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.6    0.0019       1.7      24     113 ..     153     246 ..     135     270 .. 0.75
   2 ?    1.6   0.1      0.15   1.3e+02      30      92 ..     427     500 ..     390     552 .. 0.54
   3 ?   -2.1   0.0       2.1   1.8e+03      38      52 ..     711     725 ..     626     764 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0019
       TMPIT  24 kleelsklqskcskeikkqkkrlkelksslkklkksvk....eeeeeeveelkeelkerkkvlkevesllpkknglylklvlGnvnvsllnkqd 113
                 ++  +  + ++ +++ik+qk+ l++++++l+  +++++    + e+e v+ l++el++ ++  +  ++ l +  g+  ++  G++++++  +++
  KKY18049.1 153 DISYIRDHLNRQAEQIKSQKQVLEKVSEELHAQDQRTRnalvKVENEDVSLLERELRKHQQANEAFQKALREIGGIITQVANGDLSMRVQVHSS 246
                 44555666677777788888888888887777666644556699999**********************9999********9999998765554 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.15
       TMPIT  30 klqskcskeikkqkkrlkelksslkklkksvk...........eeeeeeveelkeelkerkkvlkevesllpkk 92 
                 k   +c+ ei + k+ ++++  +l+++ ++v+              + +v++++ + k+ +++++ +++ l+ +
  KKY18049.1 427 KVTAECKGEILELKNTINDMVGQLQQFAQEVTkiakevgtdgvLGGQATVHDVQGTWKDLTENVNGMANNLTTQ 500
                 44444555555555555555555544444433333333344442333334444444444444444444443333 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.1
       TMPIT  38 eikkqkkrlkelkss 52 
                 e+++ k++++++ s+
  KKY18049.1 711 EMDELKRKINKMVSN 725
                 222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1846  (0.102962); expected 358.6 (0.02)
Passed bias filter:                      788  (0.0439511); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 1.20u 0.34s 00:00:01.54 Elapsed: 00:00:00.53
# Mc/sec: 7556.63
//
Query:       KKY18050.1  [L=471]
Description: putative extracellular developmental signal biosynthesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-49  167.0   0.0    8.3e-49  166.4   0.0    1.3  1  Gln-synt_C  Glutamine synthetase, catalytic domain
  ------ inclusion threshold ------
      0.014   15.8   0.3      0.036   14.5   0.3    1.7  1  BMFP        Membrane fusogenic activity


Domain annotation for each model (and alignments):
>> Gln-synt_C  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4   0.0   9.3e-53   8.3e-49       2     343 ..     143     464 ..     142     466 .. 0.89

  Alignments for each domain:
  == domain 1  score: 166.4 bits;  conditional E-value: 9.3e-53
                 T-HHHHHHHHHHHH.HHTTCEEEEEEEEEEEEESEECCCESSEEEEEEE.TB...B.TSS-TTBHC.CCCCTCCHHHHHHHHHHHTT--EECCEEECCC CS
  Gln-synt_C   2 rdPRsvlkralarl.aeeGltvvvgpElEFflfdkeedkeasksllevdseekgrpaekggyfsva.pvdeaedlrreivealealgieveashhEvat 98 
                  dPRs lkr +a++ +  Gl+++vg E+EF++++ ++ ++          e ++  ++ +g+  ++   ++ ++++ ei+++l+++g+ev++ h+E a+
  KKY18050.1 143 LDPRSALKRKVAEVrERAGLEFLVGYEIEFIILEIKNPQT---------GE-EQPLETGSGIWTTDtYRNKSAPVLGEILDILNDAGVEVRQYHSEGAN 231
                 69***********9556799**************887754.........22.222333444444440557899************************** PP

                 TEEEEEE--EECHHHHHHHHHHHHHHHHHHHHTT-EEE-SSSSSTTS---BEEEEEEEEECTTEESSB-TTSGGGB-HHHHHHHHHHHHHHHHHHHHHS CS
  Gln-synt_C  99 gQvEinlkfadalkaaDnvvtfKrvvkevArkhgltatFmpKplegdnGsgmHvhlSlwdkdgknlfadeddeyalselarhfigGllkhakaltalta 197
                 g +Ei++++  +l+a+D++++ ++v+k v  khgl+ t++ +p eg +  g+H+h+S++        +d++      ++a +f  G+l+ ++ l a+  
  KKY18050.1 232 GMFEISTEPLPPLQAVDELYFAQEVIKGVCYKHGLRGTLHVQPTEGGPHVGCHTHISIV-------GCDSE------KVAGSFTQGVLNSMPGLIAIGM 317
                 ***********************************************************.......35555......7999****************** PP

                 -SCCHHHHCSSSTTSSSBEEEESS-TTCSEEEE-TSGGCSTEEEECEBTTS-HHHHHHHHHHHHHHHHHTT---..-----S-SSSS-TTTH..TSS-B CS
  Gln-synt_C 198 ptvnSYkRlvpgyeaPvalawgarNRsallRipaskekakrvElRlpdasaNPYLalAallaAgldGienklep..gepvekdlyelspeer..kgiee 292
                 p+  SY R       + +++w+++ + + +R +    +  ++ElR pd  aN YL l+all  +   +e+++e+  ++ +++ l +++ eer  +gi++
  KKY18050.1 318 PSWVSYVRAS---FLGGWVMWANDFKGCPFRRVN-PMNDFHWELRWPDFLANHYLFLTALLGVAAAAVEQEVELemKPRTKNTLTKIETEEReeTGIKR 412
                 ******9976...8899**************988.78899****************************9987652155666667778888778899998 PP

                 .--SSHHHHHHHHHCSHHHCCSS-HHHHHHHHHHHHHCHHHHHCT--HHHHH CS
  Gln-synt_C 293 .lPasleeAlealeedellkevlgeevieaylalkraEleeleeevsdwele 343
                  lP+++++ l+ale+de++k+ +g++++e++l+ k+aE e+++  +++ e++
  KKY18050.1 413 aLPSTMRQGLDALEQDEIIKKEMGSHLFERFLQNKNAEEEAFKNIPTEAERR 464
                 8*********************************************999975 PP

>> BMFP  Membrane fusogenic activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.3     4e-06     0.036      16      70 ..     372     427 ..     360     428 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4e-06
        BMFP  16 dalpaaag.vreeieknvravlqealsklDLVtREEFdvqrevlartrekleaLea 70 
                   l+ aa+ v++e+e  ++ + +++l+k++   REE  + r++ + +r+ l+aLe+
  KKY18050.1 372 ALLGVAAAaVEQEVELEMKPRTKNTLTKIETEEREETGIKRALPSTMRQGLDALEQ 427
                 5566666669********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3125.43
//
Query:       KKY18051.1  [L=839]
Description: putative cell polarity [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-25   87.0   8.3    6.8e-14   51.2   0.2    2.7  2  GIT_SHD        Spa2 homology domain (SHD) of GIT
  ------ inclusion threshold ------
      0.011   15.9   0.2      0.011   15.9   0.2    3.2  3  GIT1_C         G protein-coupled receptor kinase-interacting 
       0.33   11.3  13.9        5.6    7.3   0.1    4.3  4  BLOC1_2        Biogenesis of lysosome-related organelles comp
          3    8.0  33.1       0.15   12.3  10.1    3.4  3  Tropomyosin_1  Tropomyosin like
        3.4    5.7  21.1        1.9    6.6  14.8    2.4  2  EzrA           Septation ring formation regulator, EzrA


Domain annotation for each model (and alignments):
>> GIT_SHD  Spa2 homology domain (SHD) of GIT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.2   1.9e-17   6.8e-14       1      28 [.      30      57 ..      30      58 .. 0.98
   2 !   38.0   3.0   2.5e-13   9.1e-10       1      27 [.      93     119 ..      93     119 .. 0.99

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 1.9e-17
     GIT_SHD  1 ARqKLarLsnkqFeeLvtDVydEldRRe 28
                AR+KL++Ls+ qF+eL+tDVydEl+RR+
  KKY18051.1 30 ARDKLLKLSPIQFHELSTDVYDELQRRQ 57
                9**************************9 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 2.5e-13
     GIT_SHD   1 ARqKLarLsnkqFeeLvtDVydEldRR 27 
                 ARqKL++L +++F +L+tDV++El+RR
  KKY18051.1  93 ARQKLSTLQQQRFRDLATDVFCELERR 119
                 9*************************9 PP

>> GIT1_C  G protein-coupled receptor kinase-interacting protein 1 C term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.3      0.94   3.4e+03      42      81 ..     413     449 ..     379     468 .. 0.47
   2 ?    1.7   0.4     0.072   2.6e+02      18      89 ..     504     549 ..     494     577 .. 0.53
   3 ?   15.9   0.2   2.9e-06     0.011      12     115 ..     713     823 ..     709     825 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.94
      GIT1_C  42 qsaVqdlvalfpenlseetlrtaLkqLtssaerLqeeCee 81 
                  + + ++ a+  ++ ++ ++++   +L ++++rL+ee +e
  KKY18051.1 413 STFLSEMRAMAESSGASWEREE---KLARENHRLEEEVKE 449
                 2333333333332222222222...455555555555444 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.072
      GIT1_C  18 riqeLlqaaqeekkesfvpcaerIqsaVqdlvalfpenlseetlrtaLkqLtssaerLqeeCeelqe.aeses 89 
                  i eLlq a++++ +++ ++ + +  aV+ + + +                            +++  ++++s
  KKY18051.1 504 AIDELLQIARSDEPSAVLNHLKTVVLAVRHITQDVD---------------------------AASDkKDEDS 549
                 456666666666666666666666666666655444...........................2222222222 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 2.9e-06
      GIT1_C  12 teqitkriqeLlqaaqeekkesfvp.caerIqsaVqdlvalfpenlseetlrta........LkqLtssaerLqeeCeelqeaeseskedikketqqvi 101
                 t  +++ iq+L+++ ++e   ++++   + I ++V  +v+     ++e++ +          +++L +  +rL    +e+++   +++ ++k++t+++ 
  KKY18051.1 713 TSILVQSIQSLVNSIRAEDDMKIIRgYMNAIANVVGKVVSSTEAGMREPNASPLlrekaepvIRSLADCEARLLDASTESET--LQNPMQMKEFTNRLP 809
                 7778899999999999766666554277889999999999998666666655532234456688888888888877777777..78999********** PP

      GIT1_C 102 qcAydiAkaaKqLv 115
                   A++iA+ +K+Lv
  KKY18051.1 810 PLAFEIARETKELV 823
                 *************9 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0016       5.6      43      85 ..     267     309 ..     258     319 .. 0.67
   2 ?    2.9   2.4     0.038   1.4e+02      32      71 ..     335     374 ..     316     394 .. 0.82
   3 ?    6.5   0.4    0.0029        10       6      68 ..     403     465 ..     399     469 .. 0.93
   4 ?   -3.6   0.0       3.9   1.4e+04      53      70 ..     815     829 ..     793     831 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0016
     BLOC1_2  43 aaslekkleklnekyeelqpylqqidqiekqvteLeeavseLD 85 
                 ++ +++++   n+  ++l +  +qi  +++q+ +Le+ v + D
  KKY18051.1 267 TSTTSRSAASSNRDGKALTEAQTQIAGLKDQIGDLEASVRQKD 309
                 5555666666666667777777777777777777777777655 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.038
     BLOC1_2  32 asekykklkdvaaslekkleklnekyeelqpylqqidqie 71 
                 ++ek ++ ++  ++l+++le+ln ++e+++++l+  ++i 
  KKY18051.1 335 MEEKLESAERLNQDLREQLERLNIEQENMRSQLDLAKNIG 374
                 5678888888899999999999999999999988766665 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0029
     BLOC1_2   6 kvskyleaeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqid 68 
                 kv++ +++e +   ++++ + +   a+ e+ +kl+++   le+++++ +++y+  + +l+q+ 
  KKY18051.1 403 KVTEEVRQEASTFLSEMRAMAESSGASWEREEKLARENHRLEEEVKEWKSRYARTKTQLRQVR 465
                 788889999999999*********************************************996 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 3.9
     BLOC1_2  53 lnekyeelqpylqqidqi 70 
                 + ++ +   +++q++d i
  KKY18051.1 815 IARETK---ELVQRLDTI 829
                 444333...333333333 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0  14.4      0.12   4.2e+02      30     140 ..     284     393 ..     264     396 .. 0.75
   2 ?   12.3  10.1   4.1e-05      0.15      38     108 ..     396     466 ..     385     472 .. 0.88
   3 ?   -2.7   0.1       1.6   5.9e+03      85     118 ..     767     800 ..     765     807 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.12
  Tropomyosin_1  30 nlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEeeleesdkkLkettekLretdvkaeelERkv...kaLeq 122
                     +e   +i+ L+ ++  le+ v + + ++   +   e +e+++ n+e l+ k + +Ee le++++  ++  e+L+  +++ e++  +    k++ +
     KKY18051.1 284 LTEAQTQIAGLKDQIGDLEASVRQKDMEIVRLQ---EFEESNAENKEWLSVKAD-MEEKLESAERLNQDLREQLERLNIEQENMRSQLdlaKNIGD 375
                    567777888888888888888887776665554...455566778899999975.79999999988888888888888888888777522256667 PP

  Tropomyosin_1 123 erdewekkyeeleekyke 140
                       ew  k+e l++++++
     KKY18051.1 376 DGGEWKMKFETLDNEHQN 393
                    777899999999988875 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 4.1e-05
  Tropomyosin_1  38 ksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEeeleesdkkLkettekLretdv 108
                     +L+++ +++ee   ++++ l+e+++ ae+s       e+l r ++ LEee+ e  ++ + t ++Lr++ +
     KKY18051.1 396 LELQEQRKVTEEVRQEASTFLSEMRAMAESSGASWEREEKLARENHRLEEEVKEWKSRYARTKTQLRQVRA 466
                    4789999999999999****************************************************866 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.6
  Tropomyosin_1  85 LEeeleesdkkLkettekLretdvkaeelERkvk 118
                    L e +e   ++L++   +L +++ ++e+l   ++
     KKY18051.1 767 LREKAEPVIRSLADCEARLLDASTESETLQNPMQ 800
                    5566666667777777777777777777665544 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.6      0.01        38      92     138 ..     280     326 ..     273     332 .. 0.84
   2 ?    6.6  14.8   0.00052       1.9     301     432 ..     332     463 ..     325     466 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.01
                 -SHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTHHHH CS
        EzrA  92 dkykfkkakkklaeleeeldeveekikkileelkelteseeknreei 138
                 d++ + +a++++a l++++ ++e+++++   e+  l+e ee n e  
  KKY18051.1 280 DGKALTEAQTQIAGLKDQIGDLEASVRQKDMEIVRLQEFEESNAENK 326
                 67788899999999999999999999999999999999999998765 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.00052
                 HHHHTTTSSSSSHHHHT--HHHHTTGGG-TTTS-GGGSSTTTSTTHHHHHHHHHHHHHHHHHHHHHHS-SS---STTGGGTHHHHHHHHHHHHHHHHHH CS
        EzrA 301 kkeveknlkelkeklehlekqnkelkeeldrlkqsYeLseeeleklrelekelkelekdyeeleekleekkvaYSelqeeleeleekleeieekqeeil 399
                 k ++e++l++ ++  + l++q++ l+ e ++++ + +L+++  +   e++ ++++l +++++l+ +l+e+  +  e+++e  ++ +++ ++ e+    +
  KKY18051.1 332 KADMEEKLESAERLNQDLREQLERLNIEQENMRSQLDLAKNIGDDGGEWKMKFETLDNEHQNLHLELQEQRKVTEEVRQEASTFLSEMRAMAESSGASW 430
                 678999999999999************************************************************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS CS
        EzrA 400 eslkslrkdEkrAreqldeikkelkeikrkiek 432
                 e  ++l ++++r +e+++e+k++   +k ++++
  KKY18051.1 431 EREEKLARENHRLEEEVKEWKSRYARTKTQLRQ 463
                 ****************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1882  (0.10497); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.50
# Mc/sec: 5075.76
//
Query:       KKY18052.1  [L=181]
Description: putative peptidyl-prolyl cis-trans isomerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-42  143.5   0.3    7.5e-42  143.3   0.3    1.1  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.3   0.3   4.2e-46   7.5e-42       9     144 ..      30     164 ..      23     180 .. 0.84

  Alignments for each domain:
  == domain 1  score: 143.3 bits;  conditional E-value: 4.2e-46
  Pro_isomerase   9 kGrivieLfadkaPktvenFlklvkeg....fYdgttFhRvikgfmvqgGdptgktsageqe.kkggesiraipdEitsklkh.krGalamartgk 98 
                     Gri+++L+++++PktvenF++l+ +g     Y+g++FhR+i++fm+qgGd+t ++  g++  +  g   +++pdE+ +k kh k+G+l+ma++g 
     KKY18052.1  30 TGRINFNLYDQEVPKTVENFRALC-TGekgfGYKGSKFHRIIPQFMLQGGDFTRGN--GTGGkSIYG---EKFPDEN-FKFKHtKPGLLSMANAG- 117
                    59**********************.5668899*******************99984..443323333...69*****.78888899*******98. PP

  Pro_isomerase  99 epnsagsqFfItlkeaphldgkytvFGkVv..eGmdvvekiekvetde 144
                     pn++gsqFfIt+  +++ldgk++vFG+V    ++++v+++e++ + +
     KKY18052.1 118 -PNTNGSQFFITTVVTSWLDGKHVVFGEVAdeASLKIVKELEATGSGS 164
                    .8****************************8889********965444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.33s 00:00:00.81 Elapsed: 00:00:00.50
# Mc/sec: 1095.65
//
Query:       KKY18053.1  [L=538]
Description: putative peroxisome biosynthesis protein (peroxin-2) [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-35  120.5  11.0    1.1e-34  120.0  11.0    1.2  1  Pex2_Pex12  Pex2 / Pex12 amino terminal region
     0.0074   16.4   5.3      0.016   15.3   5.3    1.5  1  zf-C3HC4_4  zinc finger of C3HC4-type, RING


Domain annotation for each model (and alignments):
>> Pex2_Pex12  Pex2 / Pex12 amino terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.0  11.0   1.2e-38   1.1e-34       1     221 [.      74     284 ..      74     291 .. 0.88

  Alignments for each domain:
  == domain 1  score: 120.0 bits;  conditional E-value: 1.2e-38
  Pex2_Pex12   1 deelesllkpalryilrllagqrfpilnyfdEikllldlllelltlksgngTfgeefygLkrvssselkkr....rllskrqrllsllllvlipYlkek 95 
                 deel +llk+++ ++l+++ +++    +y +Ei + l+++l+ l+++ +n+T+g  ++gL ++   + + +     +++++q++ + ll+v++ Y++ek
  KKY18053.1  74 DEELLTLLKDQVGDALKYY-SSSLR-EDYASEILFSLRAVLFKLSIWDHNATYGATLQGLNYT---DARSSsivpPPPTRWQKASYGLLTVFGRYAWEK 167
                 89***************76.66666.7************************************...4444445669*********************** PP

  Pex2_Pex12  96 ldelysarerysaealsd....earnsreslkkrlkrlllklypfiealyellnlvlqllYL.sgkyysllkrllgiryvrlnpadqrrnarrpsyeyl 189
                 +++++    ++s+    d      +++++s+++ l  +l +l ++ ++ + l++++ +l +L +g+y +l++rll++r+v+++ + +    r +s+eyl
  KKY18053.1 168 WEAYL--VSESSE----DysyyTTPSTSSSSRTELISRLSRLTSLTSTTHSLASIISFLIFLvNGRYRTLTDRLLRLRLVPASSQIS----REVSFEYL 256
                 *****..222222....2234599999*******************************************************88888....******** PP

  Pex2_Pex12 190 nrqllwnalkellgllllllllsvfllkllew 221
                 nrql+w+a++e+l +ll+    +v++ + ++w
  KKY18053.1 257 NRQLVWHAFTEFLLFLLP----LVGIGRWRRW 284
                 ******************....5555555555 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   5.3   1.8e-06     0.016      13      42 .]     375     404 ..     370     404 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.8e-06
  zf-C3HC4_4  13 sleCGhsfClsCisslqkepdgeqllCplC 42 
                 +++C +++C+ Ci    + ++ge+++C  C
  KKY18053.1 375 TIPCKCIYCFVCIATKIEAEEGEGWTCLRC 404
                 79*************************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       917  (0.0511462); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3537.57
//
Query:       KKY18054.1  [L=1075]
Description: putative importin 11 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-16   57.5   2.2    2.8e-15   56.0   0.3    2.9  3  IBN_N     Importin-beta N-terminal domain
  ------ inclusion threshold ------
      0.028   14.5   1.3       0.31   11.1   0.0    3.4  3  Xpo1      Exportin 1-like protein
      0.083   12.1   0.1       0.19   10.9   0.1    1.5  1  GBP       Guanylate-binding protein, N-terminal domain


Domain annotation for each model (and alignments):
>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.3   4.6e-19   2.8e-15       2      71 ..      39     107 ..      38     110 .. 0.94
   2 ?   -1.6   0.0      0.45   2.7e+03      24      43 ..     570     589 ..     563     590 .. 0.84
   3 ?   -3.5   0.0       1.8   1.1e+04      58      72 ..     659     673 ..     658     674 .. 0.84

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 4.6e-19
                 HHHHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHCGSXHHHHHHHHHHHHHH CS
       IBN_N   2 ekqLkqlekqpgflsallqilanseselevRqlAalyLknlitkhWsdeeekqslpseekeqIrnnllnl 71 
                 ++qL+++ek pgf s+l+ i+ + +++ e+R+l++++Lkn i+k+W++++++ +++++ek  Ir+ +l++
  KKY18054.1  39 TQQLQNWEKAPGFYSTLQDIFIDHSLPDEIRYLSIIQLKNGIDKYWRKTAQN-AISKDEKLRIRTRALQA 107
                 69*********************************************66666.*************9986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.45
                 CTTSHHHHHHHHHHHHHHHH CS
       IBN_N  24 nseselevRqlAalyLknli 43 
                 +s++++ vR  A+ +L++ +
  KKY18054.1 570 DSSNDQVVRITAGRQLRQVL 589
                 678888*********99876 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHHHH CS
       IBN_N  58 seekeqIrnnllnll 72 
                 see  ++++++l+l+
  KKY18054.1 659 SEEEHLFKQQILTLV 673
                 6889999****9976 PP

>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.2e-05      0.31      10      67 ..     122     189 ..     117     238 .. 0.77
   2 ?   -1.3   0.1      0.35   2.1e+03      88      88 ..     711     711 ..     632     787 .. 0.58
   3 ?   -1.1   0.0      0.29   1.7e+03      65      96 ..     820     856 ..     792     882 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.2e-05
                 HHHHHHHHHHTTTTSTTHHHHHHHHHCT...........HHHHHHHHHHHHHHHHHHHTSHTTTSCHH CS
        Xpo1  10 ealaelflqeypnnWpsffddllsllsss..........psglelllriLkvlpeEiadfsrskleqe 67 
                 ++la++++ e+p++Wp+++++l+  l+            +s+l  ll+i+k l+    +  r++l+q 
  KKY18054.1 122 LLLAKIARIEFPQDWPDLITNLIGHLREAttptvksrylKSALYTLLQIIKELSTARLQRTRTSLQQV 189
                 589********************999887677888777766677777777777666655555555443 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.35
                 H CS
        Xpo1  88 l 88 
                 +
  KKY18054.1 711 E 711
                 2 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.29
                 CHHHHHHHHHHHHHH.....HHHHHHHHHHHHHHHHH CS
        Xpo1  65 eqerrndlkdllrsn.....vqkilelllqileqsqs 96 
                  +e+ n l++ll+++     ++++l+ l ++  ++  
  KKY18054.1 820 HEEKSNLLRRLLTVSissglLPQMLTALHECFVYHAA 856
                 3466777888888777666777777777777766655 PP

>> GBP  Guanylate-binding protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   3.3e-05      0.19     198     249 ..     364     415 ..     353     426 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.3e-05
                 HHHHHHHHHESEEEEEEEE-SSHHHHCSTCGCSCBGGGS-HHHHHHHHHHHH CS
         GBP 198 llRkcirkfFpkrkcFvldrPglkkalnakleelkedeldeeFkkqlkelvs 249
                 l+R +++  ++ ++ F  ++P +k + +  ++++k+d l+e+F++q+ elv 
  KKY18054.1 364 LVRAFVKMAYNPTHTFKYQHPQDKEERKEAVDTVKNDILTESFVTQMMELVV 415
                 68999******************************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1075 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.49
# Mc/sec: 6550.01
//
Query:       KKY18055.1  [L=620]
Description: putative alkaline phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.7e-108  361.3   0.0   8.2e-108  361.0   0.0    1.1  1  Alk_phosphatase  Alkaline phosphatase
    9.8e-07   28.4   0.9    1.9e-06   27.4   0.9    1.4  1  Metalloenzyme    Metalloenzyme superfamily


Domain annotation for each model (and alignments):
>> Alk_phosphatase  Alkaline phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.0   0.0  9.2e-112  8.2e-108       1     415 [.      93     541 ..      93     542 .. 0.87

  Alignments for each domain:
  == domain 1  score: 361.0 bits;  conditional E-value: 9.2e-112
                      -SEEEEEEETT-SHHHHHHHHHHHCHCTCSSSTTS.TTGGG-SEEEEEESSECSTTSSGHHHHHHHHHHSSBTBTT-BSB-TTST-B---HHHH CS
  Alk_phosphatase   1 aknvilligDGmgvstvtaaRslkeqakdklgeetllamdrfplvglsktyavdkqvtDSaataTAyacgvktyngaigvdaaagkevksvlea 94 
                      ++n+i++++DGmg+++++ +Rs ++ +++ + +++l  ++++  +g+s+t+++ + vtDSaa+aTA++cg+k+yngai+v ++ ++++ +vlea
       KKY18055.1  93 KRNMIFMVSDGMGPASLSLTRSWRQYESGLPLDDILVLDQHL--IGSSRTRSSSSLVTDSAAGATAFSCGLKSYNGAISVLPD-HSPCGTVLEA 183
                      69*****************************99998887776..***************************************.********** PP

                      HHHTT-EEEEEEEEETTSHHHHTTTTTBSSTTSSSHHHSTCCCHHTTS-SHHHHHHHCST-SEEEEESCGGGSBCSBCTSSTCCT.SBHHHHHC CS
  Alk_phosphatase  95 AkkaGkstGlVtTtritdAtPaalvahvesRkwkedaavpaealeegkkdiaeqlikakkidvllGGGrkeffpaeyatdGerkdGrnlieeak 188
                      Ak+aG+ tGlV+TtritdAtPa + +h + R  +ed+         +++++  +++ + ++d+l+GGGr +f+p++++    rkd ++++e ak
       KKY18055.1 184 AKRAGYMTGLVVTTRITDATPACFASHANRR-EYEDLI--------AEQEVGYYPLGR-QVDLLMGGGRCHFLPNTTSGS-CRKDDKDIVEMAK 266
                      ***************************9888.677777........799*********.*************88776655.46666******** PP

                      CTTCEEE-SHHHHHHHCT...STSSCEEEESSSSSCS-CCCSCTC..CE--HHHHHHHHHHHH....TTSTT-EEEEEEETCHHHHHHTTTHHH CS
  Alk_phosphatase 189 kkgyqyvsdrkeLlkake...envkplLGLFadgdlkveldrdea..tdPsLkemtevAiklL....sknekGFFLlVEGsrIDhaaHendavg 273
                      kkg++y+++rk+L   ++   +   plL LFa++d+++e+dr +a  t+Ps +em ++A+++L       +kGFFL++EGsrIDha+H+nd++ 
       KKY18055.1 267 KKGFNYIDTRKDLDDLTDlgkAIELPLLALFAEHDIPYEIDRIHAadTYPSEAEMAKAALDALkaatVDSDKGFFLMIEGSRIDHAGHDNDPAA 360
                      ************6655542104599*****************7651267**************77744456*********************** PP

                      HHHHHHHHHHHHHHHHHHCHH.CTTEEEEEEESSEESEEEESTTST.......T..TTSEECCEET.TTSSEE...................CE CS
  Alk_phosphatase 274 alsEvvefdeAvkaalefakk.eketlvvvTaDHshvfsfggyttr.......gesvlglepllaa.dkkpvl...................ll 339
                      +++Ev++ deA++a+l+f +k e+e ++v+T+DH++    gg++t        +++ +++++l +a  +++++                     
       KKY18055.1 361 QVREVMAHDEAFAAVLDFLEKdETEGVLVSTSDHET----GGLSTAkqlhqeyPHYRWYPSVLSNAtRSMQYVaadwaawstgdgakanrlqKR 450
                      ********************98899***********....8888777888999**********9995666666*****************9955 PP

                      EECCSTT...BTTB.....HHHHTSTT..................EEE..SSHTEE-SSEEEEEESTTGGG.GSCEEECCHHHHHHHHHCT CS
  Alk_phosphatase 340 lYgngeetkelkgvredvtakeskead..............yrkraavpltseeHtgedvavfAygpkael.vrGvqeqteiakvlaaale 415
                      +Y + + + +  g++++ ++++++  d              +++ra++++++++H+++dv+++A  pk++l + G++e+te+++++   le
       KKY18055.1 451 TYVKVNIADKWLGIKDATDEEADAIIDaepiwppmylfgemVSRRAQIGWSTHGHSAVDVNIYASNPKHALpLVGNHENTEVGQFISDYLE 541
                      565555544444444444444444444445577778877889*************************986549************998776 PP

>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.9   2.1e-10   1.9e-06     115     187 ..     317     396 ..     297     408 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 2.1e-10
                    -HHHHHHHHHHHH.CC.-S.....EEEEEE-HHHHHHHTT-HHHHHHHHHHHHHHHHHHHTTS-TTT..EEEEEE-SSB- CS
                    xxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx RF
  Metalloenzyme 115 kavevaekaldailsgkfd.....lvvvniknaDmvGHtgdleatiaaieaaDeavkeildaieqvd..gilvvtADHgn 187
                    ++ e+a++alda++  + d     ++++     D +GH++d++a+++ + a Dea + +ld +e+++  g+lv t+DH +
     KKY18055.1 317 SEAEMAKAALDALKAATVDsdkgfFLMIEGSRIDHAGHDNDPAAQVREVMAHDEAFAAVLDFLEKDEteGVLVSTSDHET 396
                    4568899999999988888889889999***********************************98752279999****76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.47
# Mc/sec: 3934.99
//
Query:       KKY18056.1  [L=356]
Description: putative zinc-binding alcohol [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.5e-25   87.1   2.8    1.1e-24   86.4   2.8    1.4  1  ADH_N         Alcohol dehydrogenase GroES-like domain
    2.8e-19   69.4   0.0    4.5e-19   68.7   0.0    1.3  1  ADH_zinc_N    Zinc-binding dehydrogenase
    2.2e-05   25.5   0.0    3.8e-05   24.7   0.0    1.4  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.015   14.6   0.1      0.026   13.9   0.1    1.3  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
      0.034   13.4   0.0      0.065   12.5   0.0    1.4  1  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain
        0.2   11.5   0.0        7.5    6.4   0.0    2.1  2  DUF268        Caenorhabditis protein of unknown function, DUF


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   2.8   3.6e-28   1.1e-24       2     109 .]      36     153 ..      35     153 .. 0.94

  Alignments for each domain:
  == domain 1  score: 86.4 bits;  conditional E-value: 3.6e-28
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE.-SS..SHHHHTT-GGG-TTBEETTTS....... CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvveplis.cge..CaaCkegeenlCeeakllgvs....... 90 
                  +v ik++ +giCgsDlh+l+   + +  +p+++GHEivGe + vg +v+++kvGdrV v +++  c +  C++C++g e++C++a++++++       
  KKY18056.1  36 SDVDIKISHCGICGSDLHTLRS-GWGPSDYPVVVGHEIVGEAVRVGTDVQGIKVGDRVGVGAQSGsCLRpdCDECSNGVEQHCQNASTTTYNskwpngg 133
                 5899*****************9.69***********************************98887696666****************999999999999 PP

                 .S-SSSBSEEEECGGGEEEE CS
       ADH_N  91 .ldGgfaeyvvvpekklvkl 109
                    Gg+a+y   ++++++++
  KKY18056.1 134 kAYGGYATYWRGHNHFVIPI 153
                 9***********99999975 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.0   1.5e-22   4.5e-19       1     129 [.     194     320 ..     194     321 .. 0.93

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 1.5e-22
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHH.HHHHHHCEEEEEEEEECSCTSSEEE. CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgat.leaalkllkpgGrlvvvGggkgeee. 96 
                 g+G+++v +AkalGa +v+a+++++ek+  a+k+Gad++i +   d +e ++    ++ +d+++ +v s++  l ++l+l++ +G++  vG+++++ + 
  KKY18056.1 194 GLGHFGVLWAKALGAdKVVAISRKSEKASDAMKMGADQFIAT---DEEENWAGRY-KNTLDLIVCTVSSPKLpLMDYLSLIDVNGTFIQVGAPEEPFPp 288
                 89****************************************...6688888888.789999999999877548899***************9999999 PP

                 EEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  97 fdlrnlllkeksilGsllgslreefkealdlla 129
                 f+++ l++k ++i Gs+ gs ++e+ke+l+l+a
  KKY18056.1 289 FSAFALIAKGVKIGGSMIGS-PSEIKEMLALAA 320
                 ********************.9******99975 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.3e-08   3.8e-05       1     128 [.     227     349 ..     227     354 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.3e-08
                   TT-SEEEETT.STTHHHHH-TT-EEEEEES-H...HHHH.HHHHHHEEEEEEEEE----..S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHH CS
  ADH_zinc_N_2   1 lGAdevidyr.tedfeaatggegvDvvldtvg...gealleaslkvlpggGrlvsiggpp.lsaallkpakkrkgrsvkyeflfsmkasaqadilee 92 
                   +GAd++i  + +e+++    ++  D++++tv     +  l + l++++ +G+++++g+p   +   ++ a+ +kg ++  +++     s + + ++e
    KKY18056.1 227 MGADQFIATDeEENWAGRY-KNTLDLIVCTVSspkLP--LMDYLSLIDVNGTFIQVGAPEePFPPFSAFALIAKGVKIGGSMIG----S-PSE-IKE 314
                   59*****666699999555.577*********64222..24666777999*******765555556666666666666666666....4.778.*** PP

                   HHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--S CS
  ADH_zinc_N_2  93 laalieeGklrpvvdrvfpleeaaeAhrylesgrar 128
                   ++al + +k +  v+ v p+++ ++A+ ++ +g ar
    KKY18056.1 315 MLALAATKKTKAWVE-VRPMKDGNQAIIDMDQGNAR 349
                   **************8.9****************987 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   8.8e-06     0.026      36      80 ..     184     229 ..     181     238 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.8e-06
                   TSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHHCHHHHTC CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgm.kviaydrskkkeeeeeelgv 80 
                   gk+vGi+G+G +G+     +ka+g+ kv+a++r+ +k +++ ++g+
    KKY18056.1 184 GKRVGIVGIGGLGHFGVLWAKALGAdKVVAISRKSEKASDAMKMGA 229
                   89***********************99******9887765555554 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.2e-05     0.065      30     102 ..     186     259 ..     168     264 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.2e-05
                  EEEEESTSHHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEEE---BT CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglga.kVtvlDvrparleqleslgakfvevlksqeellaeavkeadvvigtvlip 102
                  +v ++G G  G   +  ak+lga kV+++  +++++    ++ga  + +  ++e+   +  ++ d++++tv  p
   KKY18056.1 186 RVGIVGIGGLGHFGVLWAKALGAdKVVAISRKSEKASDAMKMGADQFIATDEEENWAGRYKNTLDLIVCTVSSP 259
                  688*******************955999999999999999999996666666666666777789******9877 PP

>> DUF268  Caenorhabditis protein of unknown function, DUF268
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0025       7.5      20      89 ..     205     275 ..     188     280 .. 0.89
   2 ?    2.9   0.0     0.029        88      10      31 ..     324     345 ..     317     351 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0025
      DUF268  20 knGakkiltveynkleieeefkdrlssilpvefaknwk.kyaekfdfaasfssieksglgrygdpldpiGd 89 
                   Ga+k++++ +++ + ++ +k    +   ++  +nw  +y++++d++++  s  k  l  y   +d  G 
  KKY18056.1 205 ALGADKVVAISRKSEKASDAMKMGADQFIATDEEENWAgRYKNTLDLIVCTVSSPKLPLMDYLSLIDVNGT 275
                 569**********************************658*********9999999999999999998875 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.029
      DUF268  10 mqPwvevmalknGakkiltvey 31 
                 ++ wvev  +k+G + i+ +++
  KKY18056.1 324 TKAWVEVRPMKDGNQAIIDMDQ 345
                 678**************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2373.93
//
Query:       KKY18057.1  [L=565]
Description: putative mfs monocarboxylate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-32  111.2  72.7    1.2e-26   93.5  47.4    2.1  2  MFS_1     Major Facilitator Superfamily
    1.7e-07   30.5  32.2    1.6e-05   23.9  11.7    2.3  2  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5  47.4   1.3e-30   1.2e-26      11     325 ..     173     486 ..     166     491 .. 0.82
   2 !   31.9  17.3     7e-12   6.3e-08      53     170 ..     427     551 ..     427     563 .. 0.88

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 1.3e-30
       MFS_1  11 arsilgpalplalaedlg.............ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslw.lllvlrvl 94 
                 ++s l++al  + +++ g             +s+ +i +++++ya+++++  + +G+l d +G+r ++++g +++ ++ lll+   s +w ++l + v+
  KKY18057.1 173 SFSGLTAALG-I-MNTIGtyqaylsthqlrdSSEGSIAWIFGVYAFLSFFCGIQIGPLFDAYGPRLLIFIGSVFLMAAQLLLA-QcSVYWhFMLCFGVV 268
                 4555555554.2.23333344444455566799999******************************66666666666646666.3499*********** PP

       MFS_1  95 qGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgp 193
                  G+g++++f+ ++++i + f + +rg+ +gl+s+g ++G ++ pl   +l+  +g+ ++  ++a++ l+++ l+ l+++ + p+++ k + +       
  KKY18057.1 269 GGIGTSLIFTPAISAIGHFFLR-RRGQFVGLASTGGAVGGVIFPLTLQALIPRIGFAWSVRLIALLNLILLTLANLFIRSRLPPPSSKISLRS------ 360
                 *********************9.***********************************************99888888777777777766666...... PP

       MFS_1 194 aplvpawkallkdpvl.willialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalgl 291
                   ++p    +++d  + +  ++++++ + ++++ l+++p+y   ++g s   l++ l+a+l +++ +++ + g ++d++gr + ++++++l++++algl
  KKY18057.1 361 --ILP-DVTIFRDLSFtFTTMAVFFTEW-ALFIPLSYVPSY-CLTHGVS-TTLSYQLIAVLNAGSSFGRYIPGLVADKIGRFNSIIITIFLCAVFALGL 453
                 ..666.4556666666134555555555.8888********.*******.8999********************************************* PP

       MFS_1 292 allavtssavllllvlvliGfglgfvfpsllala 325
                  l a+  +  +++++l l+Gf++g   +++ +++
  KKY18057.1 454 WLPANG-NLGIIIAFLCLFGFASGSGIGLAPVCI 486
                 ******.777777788889999998877777766 PP

  == domain 2  score: 31.9 bits;  conditional E-value: 7e-12
       MFS_1  53 GrlsdrfGrrrvlllglllfalglllllfa.sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg 149
                 G ++d++Gr   ++++++l a+++l l+++ ++   +++++ +l G+++g+++ ++ + i ++ + e+ gr+++  ++ +s++++ g +++g ++ss+g
  KKY18057.1 427 GLVADKIGRFNSIIITIFLCAVFALGLWLPaNGNLgIIIAFLCLFGFASGSGIGLAPVCIGQLCKTENLGRYYATCYTVASFATLTGLPIAGNILSSGG 525
                 789********9999999999996777764455666***************************************************888888887888 PP

       MFS_1 150 .....Wravfyilaivsllafvlfll 170
                      W+++ ++ + ++l a+ +f +
  KKY18057.1 526 gekgnWSGMILFTGCAYLGALACFTA 551
                 8****************999887655 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2  12.6   6.9e-06     0.061      16     161 ..     181     314 ..     169     347 .. 0.70
   2 !   23.9  11.7   1.8e-09   1.6e-05      44     149 ..     404     508 ..     371     551 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.9e-06
                 HHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHH CS
    Sugar_tr  16 tgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGi 114
                 +g+++++ t +++++ ++l  s++          +i++++ + +++ ++ +g+l d +G +  + i++v+++++++l a +  ++++ +l++g v+ Gi
  KKY18057.1 181 LGIMNTIGTYQAYLSTHQLRDSSEGSI------AWIFGVYAFLSFFCGIQIGPLFDAYGPRLLIFIGSVFLMAAQLLLAQCSVYWHF-MLCFG-VVGGI 271
                 578888888888888888888887665......6************************************************66444.33333.66666 PP

                 HHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 115 gvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl 161
                 g     +++P  is i +  lR + + +  la t G + + if l l
  KKY18057.1 272 GT--SLIFTPA-ISAIGHFFLRRR-GQFVGLASTGGAVGGVIFPLTL 314
                 54..4444443.555555555533.4444455555555555555555 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 1.8e-09
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                 s++ls  + +++++G+ +G ++ gl++d++GR +s++i+++l+ + a+   +  ++ ++ ++i+   l G++ G   +l+P+ i+ +++++  g+    
  KKY18057.1 404 STTLSYQLIAVLNAGSSFGRYIPGLVADKIGRFNSIIITIFLCAVFALGLWLPANG-NLGIIIAFLCLFGFASGSGIGLAPVCIGQLCKTENLGRYYAT 501
                 6777888999***************************************9999955.*******************************88876654333 PP

                 HHHHHHH CS
    Sugar_tr 143 yqlaitf 149
                   +  +f
  KKY18057.1 502 CYTVASF 508
                 3333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 3414.76
//
Query:       KKY18058.1  [L=1091]
Description: putative dna excision repair protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-47  160.1   0.0    9.8e-47  159.3   0.0    1.2  1  SNF2_N         SNF2 family N-terminal domain
    2.6e-22   78.7   1.0    2.3e-21   75.7   1.0    2.7  1  VIGSSK         Helicase-associated putative binding domain, C
    1.1e-19   70.8   0.0    1.4e-18   67.3   0.0    2.6  3  Helicase_C     Helicase conserved C-terminal domain
    9.6e-08   31.5   0.0    2.1e-07   30.4   0.0    1.5  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
    1.3e-07   31.8   0.3    2.7e-06   27.5   0.0    2.7  3  ResIII         Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.3   0.0   2.7e-50   9.8e-47      55     313 ..     244     512 ..     229     520 .. 0.85

  Alignments for each domain:
  == domain 1  score: 159.3 bits;  conditional E-value: 2.7e-50
                 T--EEE---TTS--HHHHHHHHH...HHTTTS---...............S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH----------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  55 vrGGiLaDemGLGKTvqvlalilaqrakeekdkek........krkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapk 145
                 ++GGiL DemG GKT+qv+a+++a   k  +++          k+    +  tLi++P sl+ +W++e+ ++     ++ ++++      +k+  + ++
  KKY18058.1 244 QKGGILGDEMGTGKTIQVIAFLTAAYGKTGDERDDkrmrkirrKDDSGWYPRTLIICPGSLIANWQSELSKWGWWH-VEKFHGSA----AEKQAALEAA 337
                 57*********************76633322222233455544444455566*******************96544.55555555....45667999** PP

                 ------EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 146 lladydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkl 244
                  +   +++ittY +++ ++      s ++ + w++vv DE+h +k   s++++ ++++++  r+ ltGT iqn+ e+l++Ll+  +++ +g  ++++  
  KKY18058.1 338 SAGRIEIMITTYTTYRINK------SRINVIPWDCVVADECHIIKERRSEITQSLNEINALCRIGLTGTAIQNKYEELWTLLNWTNPGRLGPITVWKAS 430
                 ****************777......9************************************************************************* PP

                 THHHHH............HHHHHHHHHHH.TT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH............ CS
                 xxxxxx............xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 245 lqrpie............aqaekgrsrLl.qllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkala 313
                 +++p +            ++a+k +++L+ +ll ++ lrr+k+ +  +lP+k+ +++ +++++ +  +Y++ l++ + +a++
  KKY18058.1 431 ISEPLKigqshnatvyqlSKARKVARQLVdNLLPQFFLRRMKSLIANELPKKSDRVVCCPMTSAQIDAYENFLNSDIVQAIK 512
                 *****************988888888777257889***********************************766665555544 PP

>> VIGSSK  Helicase-associated putative binding domain, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   1.0   6.4e-25   2.3e-21      21      62 .]     884     931 ..     853     931 .. 0.81

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 6.4e-25
      VIGSSK  21 s......tkkksDaiqAILasaGVeYTHenseViGsSkvEeqLsrrAe 62 
                 s      ++kk+D++qAIL +aGV+YTHenseViG+SkvE ++s++A+
  KKY18058.1 884 ShdlqppKQKKHDPVQAILLAAGVQYTHENSEVIGTSKVESRISKQAQ 931
                 123445799*************************************97 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.39   1.4e+03      42      74 ..     319     349 ..     295     362 .. 0.84
   2 !   67.3   0.0   3.9e-22   1.4e-18       3     111 .]     614     725 ..     612     725 .. 0.88
   3 ?   -2.8   0.0       2.3   8.1e+03      49      63 ..    1008    1022 ..     997    1032 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.39
                 TEEEESTTSTHHHHHHHHHHHHTTSSSEEEESG CS
  Helicase_C  42 kvavlhgelpqnereeileqfnkgesdvLiatd 74 
                 +v ++hg  ++ e++++le+  +g++ ++i+t 
  KKY18058.1 319 HVEKFHG--SAAEKQAALEAASAGRIEIMITTY 349
                 5667788..89999****************995 PP

  == domain 2  score: 67.3 bits;  conditional E-value: 3.9e-22
                 HHHHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHH CS
  Helicase_C   3 leallell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn..kgesdvLiatdvaerGidipkvnlVinfdlprnvt 98 
                 ++ l++ll   ++ g+k+l+f+++++ l+++++l ++ +++v +l+g+++ ++r +++++fn  ++++ +Li+t++++ G++i+++n V+ +d+ +n++
  KKY18058.1 614 WRVLKRLLkFWHAAGDKVLVFSHSVRLLKMLQMLFTHTSYNVSYLDGSMSLEDRAKVVDEFNsdENQFVFLISTKAGGVGLNITSANKVVVVDPNWNPA 712
                 556666664457899***********9977788877779***********************65455669***************************** PP

                 HHHHHHTTSSSTT CS
  Helicase_C  99 syiqriGRtgRag 111
                    q+ +R++R+g
  KKY18058.1 713 WDLQAQDRAYRIG 725
                 ***********97 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.3
                  TSTHHHHHHHHHHHH CS
  Helicase_C   49 elpqnereeileqfn 63  
                  + +q+er+  le+f 
  KKY18058.1 1008 SWTQEERRNCLERFY 1022
                  5799*********95 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   5.8e-11   2.1e-07      34     132 ..     599     706 ..     582     728 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 5.8e-11
  ERCC3_RAD25_C  34 kkkllyvmnpn...kfracefLikyhekrgDkiivfsDnvfaLkeyakkl.....kkpyiyGetseaerlkilqkfkknpkvntifls.kvgDtsi 120
                    + +++   np+   k+r+++ L+k+ ++ gDk++vfs +v  Lk + + +     +  y+ G++s ++r k++++f+++++  + ++s k g   +
     KKY18058.1 599 RDNIIHFSNPTfcgKWRVLKRLLKFWHAAGDKVLVFSHSVRLLKMLQMLFthtsyNVSYLDGSMSLEDRAKVVDEFNSDENQFVFLIStKAGGVGL 694
                    455666778755559*************************999987655411111678******************998776666665499***** PP

  ERCC3_RAD25_C 121 DlPeanvliqis 132
                    ++ +an ++ ++
     KKY18058.1 695 NITSANKVVVVD 706
                    *****9988776 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.3       2.7   9.8e+03      72      96 ..      77     107 ..      72     137 .. 0.46
   2 !   27.5   0.0   7.5e-10   2.7e-06       4     169 ..     226     401 ..     224     403 .. 0.82
   3 ?    1.2   0.0     0.089   3.2e+02      22      84 ..     598     658 ..     542     701 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.7
                 HHGGGGTGG..........GEEEESSS-B-- CS
      ResIII  72 eefkkflseayke......igkkvsgdkkka 96 
                 ++fk  +sea+k+      + k + +d+ ++
  KKY18058.1  77 KQFKARKSEARKRavrstkKAKAIAKDRSQR 107
                 5566666666555444332222222222222 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 7.5e-10
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S.......................-EEEEESSHHHHHHHHHHGGGGTGG... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkee..................kflflvprkslleqtleefkkflseayk 83 
                 lr+yQ e +  l e +    +k g++  + GtGKT+   a l++++ k g+e+                  ++l+++p+ sl+  +++e++k+   +++
  KKY18058.1 226 LRDYQVEGVAFLHELF--VYQKGGILGDEMGTGKTIQViAFLTAAYGKTGDERddkrmrkirrkddsgwypRTLIICPG-SLIANWQSELSKWGWWHVE 321
                 7999999999998888..59****************88456666666666655*************************9.6778899999999988876 PP

                 ..GEEEESSS-B--.......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS..TTTHHHHHT---SEEEEEESS- CS
      ResIII  84 e.igkkvsgdkkkakekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak.kswreilekfkeavllglTATp 169
                 + +g   +++    ++ ++  ++i++tt+ +   ++        +      d+++ DE+H +++  +++++ l+ +++ +++glT+T 
  KKY18058.1 322 KfHGSAAEKQAAL-EAASAGRIEIMITTYTTYRINK-------SRINVIPWDCVVADECHIIKERrSEITQSLNEINALCRIGLTGTA 401
                 6333333333333.578999*********9887777.......677777888***********9755788879999**********95 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.089
                 .TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.... CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke 84 
                 +rd+ + +  +T +GK +v+ +l +  + +g+  k+l++ ++  ll+ ++  f++++ +    
  KKY18058.1 598 ERDNIIHFSNPTFCGKWRVLKRLLKFWHAAGD--KVLVFSHSVRLLKMLQMLFTHTSYNVSYL 658
                 66777778899999999998888887777766..9************9999998887776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1091 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 7262.31
//
Query:       KKY18059.1  [L=262]
Description: putative exosome complex exonuclease rrp41 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-30  104.6   0.2    1.6e-29  103.1   0.1    1.7  2  RNase_PH  3' exoribonuclease family, domain 1


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.1   8.9e-34   1.6e-29       1     132 []      22     150 ..      22     150 .. 0.95
   2 ?   -0.8   0.0      0.12   2.1e+03      30      76 ..     156     209 ..     153     235 .. 0.57

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 8.9e-34
                 EEEEEEEEESSSSTTSEEEEEEECCEEEEEEEEEEEEEE-TCCG--CCEEEECCCCECCCCEC-C...S...HHHHHHHHHHHHHHCCTC-CCGCCTCE CS
    RNase_PH   1 elRslsietgvlsqanGSaylelGdtkvlasvtgpieerpseerddaegaldveveyapfasgerrregrpsdeeielsrlleralrpsillekkpkst 99 
                 elR+++ ++ ++++a+GS+++ +G+t v+  v gp e +++++  +a+  +dve+++apfa+ +rrr+ + +++ +el+ ++ +a++  + ++ +p+st
  KKY18059.1  22 ELRRVNGSISTQPAADGSSLFCIGNTVVVGRVAGPGEGKGQRD--NANAIVDVEITIAPFAQADRRRRTKGDKRVQELQAIIASAFQTHLFTHLYPRST 118
                 79**********************************9965555..55567***************999******************************* PP

                 EEEEEEEEECCCS-CHHHCHHHHHHHHHCTCEE CS
    RNase_PH 100 ididitvlssdggslldalinaaslALadagip 132
                 + i++++ls dg sll+a+ na++lAL+dag+p
  KKY18059.1 119 VSINLHILSLDG-SLLAACLNACTLALIDAGVP 150
                 ************.******************99 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.12
                 EEEEEEEEEE-TCCG.--CC.......EEEECCCCECCCCEC-C...S...HHHH CS
    RNase_PH  30 asvtgpieerpseer.ddae.......galdveveyapfasgerrregrpsdeei 76 
                 a+vt +i ++++e+  ++a+       g+ ++e+ +  +a+++   +g+ ++ +i
  KKY18059.1 156 AAVTSGIIPSNAESGkSTANepvldlsGQEELEIPFLTIATVTG-TNGQEDKVSI 209
                 66777776633333223333455555566666666666666555.3355555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1852.12
//
Query:       KKY18060.1  [L=1170]
Description: putative hmgreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   9.4e-139  462.5   6.1   1.5e-138  461.8   6.1    1.3  1  HMG-CoA_red     Hydroxymethylglutaryl-coenzyme A reductase
    1.9e-48  164.2   0.1    3.1e-48  163.6   0.1    1.3  1  HPIH            N-terminal domain with HPIH motif
    4.6e-11   42.8   5.1    9.8e-06   25.5   0.2    2.6  2  Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activ
    0.00046   18.4   1.0    0.00046   18.4   1.0    1.6  2  Patched         Patched family


Domain annotation for each model (and alignments):
>> HMG-CoA_red  Hydroxymethylglutaryl-coenzyme A reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  461.8   6.1  3.4e-142  1.5e-138       2     367 .]     743    1126 ..     742    1126 .. 0.95

  Alignments for each domain:
  == domain 1  score: 461.8 bits;  conditional E-value: 3.4e-142
                   HHHHHHHHHH..S-HHHHHHH.....TT----.HHHHHHHSSS---------EEEEEEEETTEEEEEEE---STTHHHHHHHHHHHHHHTT-B.EE CS
  HMG-CoA_red    2 veeRrkllee..lteeeleel.....keesld.eevadkmiEnviGyvqlPlGvagpllingkeylvPmAteEgslvAsasrgakainesgGvktt 89  
                   v+ Rr+++++   t+e ++ l     ++ +++ e v+++++EnviGy++lPlGvagpl+i+g++y++PmAt+Eg lvAs+srg+kain++gG+ t+
   KKY18060.1  743 VKVRRAMVSRtpATQEITSLLesskaPYRGYNyELVHGACCENVIGYLPLPLGVAGPLVIDGQSYFLPMATTEGVLVASTSRGCKAINAGGGAVTV 838 
                   7889999977653333222222223377888899************************************************************** PP

                   EE----EEEEEEEE.--S-HHHHHHHHHTHHHHHHHHHHCSHHCCT-EEEEEEEEE-SSEEEEEEEEE-TTC--HHHHHHHHHHHHHHHHHH..HT CS
  HMG-CoA_red   90 vlkdgmtraqvvllesvedaaelkkwiekkeeleelanaaestsrggglkdievvlagrlvvlrlkvdtgDAmGaNmvnkateaaaelieee..fg 183 
                   v+ dgmtr++++ ++++++a ++k w++++e  + ++ a++stsr+++l+++++++ag+++++r+k++tgDAmG+Nm++k++e+a++++++e  f+
   KKY18060.1  839 VTGDGMTRGPCIAFPNLTRAGAAKIWLDSEEGQRVMKTAFDSTSRFARLQHMKTAMAGTNLYIRFKTTTGDAMGMNMISKGVEKALDVMSKEsgFD 934 
                   *****************************************************************************************9886788 PP

                   SEEEEEEE-S--GGGEEEEEEEEEHHHH..-SSTTHHHHHHHHHHHHHHHHHH-HHHH....HHHHHHH........HHHHHHHHHHTT--HHHHH CS
  HMG-CoA_red  184 eeellsilsNlctdkkasainaiegrgksvvaeatigeevvekilkasaealvdlnra.n.igtankGi.ggfnahaaNgiaAvflAtGqDlaave 276 
                   +++++s+++N+c dkk++ain+i+grgk +vaea i+ +vv+++lk ++ alv+ln++ n ig+a++G+ ggfnahaaN++aA+flAtGqD+a+v+
   KKY18060.1  935 DMNIISVSGNYCIDKKPAAINWIDGRGKAIVAEALIPGDVVRSVLKSDVNALVELNVSkNfIGSAMAGSiGGFNAHAANIVAAMFLATGQDPAQVV 1030
                   9*********************************************************************************************** PP

                   HHHHHHTTSEEETTTEEEEEEEEE.----SBSHHHHH-HHHHHHHHTT---HH.........HHHHHHHHHHHHHHHHHHHHHT-----HHHHHHH CS
  HMG-CoA_red  277 esshaiaaleevedgdlygsvtlPsleVGtvGGgtklppqaellkllgvkgak......nakeLaeiiaavgLAqelsalrALaaeglqkgHmklh 366 
                   es+++i+++++v +gdl +sv++Ps+eVGt+GGgt l++q+++l++lgv+ga+      na++La+ii a+ LA+els+++ALaa++l+k+Hm+++
   KKY18060.1 1031 ESANCITIMKNV-NGDLQISVSMPSIEVGTIGGGTILEAQSAMLEMLGVRGAHptkpgdNARQLARIIGAATLAGELSLCSALAAGHLVKAHMAHN 1125
                   ************.888*******************************************************************************9 PP

                   H CS
  HMG-CoA_red  367 r 367 
                   r
   KKY18060.1 1126 R 1126
                   7 PP

>> HPIH  N-terminal domain with HPIH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.6   0.1   6.8e-52   3.1e-48       1     156 []      29     181 ..      29     181 .. 0.94

  Alignments for each domain:
  == domain 1  score: 163.6 bits;  conditional E-value: 6.8e-52
        HPIH   1 kvtkllaslskfaakhPIhtIvvvallasttYlsvleeslfdwkldsksissagkvdvdsLlegsrhlrlgeetawkWqvldseea.aslsak.daqhl 97 
                 kvt++l ++s++a+ hPIhtIv++a+last+Y+++le+slf+  + ++s+ + g+vd+ sLlegsr+l+lg+etawkWq +++ ++  +   + + qhl
  KKY18060.1  29 KVTNFLLTVSRRACLHPIHTIVFIAILASTSYVGLLEGSLFE--IANRSKHERGHVDAASLLEGSRTLHLGKETAWKWQEEEEVRTgVK---EgAFQHL 122
                 699***************************************..77999999****************************999755333...3367*** PP

        HPIH  98 aLltLvFpdsnstssataPelenvplpsnlsaylLpstpnllselssdsslafrlpydq 156
                 aL t+vFpds++++s+ aP +e++p+p+nl+ + Lp+tpn+ s++s+ds laf++p+dq
  KKY18060.1 123 ALSTFVFPDSHTATSQLAPLAEAIPFPDNLTLTELPTTPNIISSISQDSVLAFTVPFDQ 181
                 **********998888****************************************987 PP

>> Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.0   3.4e-07    0.0015       3      68 ..     271     337 ..     269     344 .. 0.90
   2 !   25.5   0.2   2.2e-09   9.8e-06      68     141 ..     365     439 ..     356     449 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.4e-07
                     HHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHH.HHHHHHHHHHHCHHCCHHCHHHHHHHHTTT CS
  Sterol-sensing   3 kskfgLglagviivllsvasslgllaylgltltlii.levlPflvlavgvdnifvlvkavqrtsrsl 68 
                      s f+L+++ ++  l+s +  l + + +g+++++i  +e lPflv+ +g + + +l++av + s ++
      KKY18060.1 271 GSNFWLAFSVLLGGLFSFLFGLIVTTKMGVPVNMILlSEGLPFLVVTIGFEKSILLTRAVLSASVDS 337
                     589******************************9862699********************9887665 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 2.2e-09
                     TCHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHCCHH.HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH CS
  Sterol-sensing  68 ldeseriaealgevgpsilltsltellalllgaltdvp.avqeFclfaavavlvdFllqitfFvavLsldirree 141
                      + ++ i  a+++ g  i+  ++ e+ +l++ga++ v+ ++++Fc+ aa  +++d ++  +f++++L ++++ ++
      KKY18060.1 365 PSIQDAIEAAVKDKGFEIVRDYAIEIGILAVGAASGVQgGLRQFCFLAAWILFFDCIMLFVFYSTILCIKLEITR 439
                     55688999***************************99846***************************99987664 PP

>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.0     1e-07   0.00046     239     451 ..     259     506 ..     233     523 .. 0.73
   2 ?   -2.5   0.2      0.21   9.5e+02     674     701 ..    1035    1062 ..    1032    1065 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1e-07
     Patched 239 vlssdalkidwvrskpilailgvlspvlAivsslGlllwlGfrfnsivtv..tPFLvLaiGvDdmflmvaawkrteakls................... 316
                 ++ s  ++   + s ++la   +l  + + + +l +   +G++ n i++    PFLv+ iG   + l+  a+   +   +                   
  KKY18060.1 259 TFISLFVSMRRLGSNFWLAFSVLLGGLFSFLFGLIVTTKMGVPVNMILLSegLPFLVVTIGFEKSILLTRAVLSASVDSRravstngapagspvgeksa 357
                 333333444567789999999999999999988888889********976337******************9999988888999*************** PP

     Patched 317 .........vkkrigealseagvaitiTslTdvlsFgiGaittlp.aiqlFciytavailfdfiYqitffaavlaiaakaeaegrhsllli.iekeesp 404
                          ++  i+ a+ + g  i+     ++   ++Ga + +  ++  Fc  +a  ++fd i  ++f++ +l i  +  + +rh+ l   +e++  +
  KKY18060.1 358 lagassppsIQDAIEAAVKDKGFEIVRDYAIEIGILAVGAASGVQgGLRQFCFLAAWILFFDCIMLFVFYSTILCIKLEITRIKRHVELRKaLEETGID 456
                 *********9*******************************9986369*************************************99887733333333 PP

     Patched 405 sklqeiesessekdddkskeaee...lkskffreiyapfllnksvrlvvl 451
                  ++ e   ++  ++ ++s+ +e+     +k+  +++  f l  ++ +v+l
  KKY18060.1 457 RRVAENVATNNDRQASASSPSESksvFGRKVRASSVPRFKLWMVTGFVAL 506
                 32222222222222223332222110222333333333433333333333 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.21
     Patched  674 allfipelitvlvitlsivsidigviGf 701 
                  ++ ++ +++  l i +s+ si++g+iG 
  KKY18060.1 1035 CITIMKNVNGDLQISVSMPSIEVGTIGG 1062
                  88899999******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.35s 00:00:01.16 Elapsed: 00:00:00.50
# Mc/sec: 7011.32
//
Query:       KKY18061.1  [L=371]
Description: putative translation factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-31  108.7   0.2    4.5e-31  107.5   0.2    1.7  1  eRF1_1    eRF1 domain 1
    4.8e-19   68.9   0.0    1.1e-18   67.7   0.0    1.7  1  eRF1_3    eRF1 domain 3
    6.4e-16   58.9   0.0    9.4e-16   58.3   0.0    1.3  1  eRF1_2    eRF1 domain 2
  ------ inclusion threshold ------
       0.18   11.9   0.0       0.31   11.2   0.0    1.3  1  DUF695    Family of unknown function (DUF695)


Domain annotation for each model (and alignments):
>> eRF1_1  eRF1 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   0.2     1e-34   4.5e-31      37     128 ..       2      95 ..       1      96 [. 0.96

  Alignments for each domain:
  == domain 1  score: 107.5 bits;  conditional E-value: 1e-34
                 HEEEEEEEECHHH.......--CEEEEEEEEEEEEEEECTTSSEEEEEEEEEEGGGG--TTSEEEEEE-TTSEEEEEE..CEESHHHHHHHHHH CS
      eRF1_1  37 dsvrastvrkvqresstgsreservklkLtikvekvdfdkdagvlrisGkvieenehvklgafhtldlelkrpftiik..eewdsfalerLkea 128
                 d ++as++r+v++esstgs++s+rv++ Lti+v+++dfd +ag+l++sG++ e+n++v +ga+htldlel+r+ft++k  ++wds+a ++L+ea
  KKY18061.1   2 DALKASAIRRVTTESSTGSTSSQRVHTYLTIRVKSLDFDGQAGQLHVSGQILEQNRYVTMGAHHTLDLELQRNFTLSKeiDGWDSIARKQLEEA 95 
                 7899**************************************************************************6556***********8 PP

>> eRF1_3  eRF1 domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   2.5e-22   1.1e-18       1     112 [.     246     349 ..     246     350 .. 0.92

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 2.5e-22
                 HHHHHHHHHHHHHHHHCTCSSEEESHHHHHHHHHTT-EE....EEEEEHCHHTSSSH.HHHHS-HHH-HHHHHHHHHHHHHHHHHT.T-EEEEE-TTSH CS
      eRF1_3   1 liqekklleefleelakdtgkavYGveevlkalemgAve....tLLvseelersrdt.lkekvketgeelelvelieelvenvees.gakveiissese 93 
                 +++e++l++ fl+ l+kd+g+a+YG +ev++a+e gAv      LL+s+el+rs d+ ++++             + ++v+ v+++ g++v ++sse+e
  KKY18061.1 246 YARETRLMTSFLDLLRKDDGRAWYGHREVERAVEKGAVGrgggVLLISNELFRSMDIsVRRR-------------WVRMVDRVRDVeGGEVRVLSSEHE 331
                 589***********************************733336**********99988888.............99999999987489********** PP

                 HHHHHHHHTTTEEEEESS- CS
      eRF1_3  94 eGeqlvkafgGiaaiLRyk 112
                 +G++l + +gG+aaiL ++
  KKY18061.1 332 SGKRL-EDLGGVAAILTFP 349
                 *****.***********97 PP

>> eRF1_2  eRF1 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0   2.1e-19   9.4e-16       4     133 .]     106     243 ..     103     243 .. 0.82

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 2.1e-19
                 EEEEETTEEEEEEEESSCEEEEEEEE------BSTTBSCCCCHHHHHHHHHHHHHHHHHHHHHHHH...H..HCHTTTESEEEEEESSTHHHHHHHHHH CS
      eRF1_2   4 livldegeAtigllkgsrtevlkkievsvPkKhkrGgqsarrfeRlreekleeflkkvaeaankaf...l..lvdkdklkgiilagpgfvkeefldkdl 97 
                 ++ ++eg A+i++++ ++t ++++ievs+P+K+ +G +  +      ++ le+f++ v +++ +++   l  + d    + i++a+pgf + +fl+   
  KKY18061.1 106 ALMMQEGMANIAFITATQTILKQRIEVSIPRKR-AGRTVDH------DKGLEKFFNTVLDSLLQQMegiLptSSDLTATRPILVASPGFLAANFLTFVS 197
                 679******************************.5999999......8999999999999998885332233456677788***********9987443 PP

                 HHHHHHT........CCEEEEE-S-TSCHHHHHHHHC..CHHHHCC CS
      eRF1_2  98 ldaelkk........kviklvdvsyggesglnevlek..aaevlkd 133
                   a  ++        + + +v++s+g+ ++l e+l    + ++l+d
  KKY18061.1 198 KLATTQSnktllalhQSMITVHSSTGHLHSLPEILSSptVTSQLSD 243
                 33333333479*9998999****************98878777775 PP

>> DUF695  Family of unknown function (DUF695)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.9e-05      0.31      64     131 ..      90     154 ..      85     157 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.9e-05
      DUF695  64 dallealkakpnalyvGritsngtrdlyfytkdteeleevleealrefpeyeieveikeDpewdtYfd 131
                 ++l+ea+++ +++  v++++++g++++ f t  ++ l++++e ++   p  +   ++++D+  + +f+
  KKY18061.1  90 KQLEEAIDTRKGTEAVALMMQEGMANIAFITATQTILKQRIEVSI---PRKRAGRTVDHDKGLEKFFN 154
                 679999*9*********************************9987...77777777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2453.52
//
Query:       KKY18062.1  [L=542]
Description: hypothetical protein UCRPC4_g05266 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1736  (0.0968264); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.50
# Mc/sec: 3247.21
//
Query:       KKY18063.1  [L=148]
Description: putative 40s ribosomal protein s19 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-57  193.0   0.1    1.8e-57  192.8   0.1    1.0  1  Ribosomal_S19e  Ribosomal protein S19e


Domain annotation for each model (and alignments):
>> Ribosomal_S19e  Ribosomal protein S19e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.8   0.1     1e-61   1.8e-57       1     135 [.       5     142 ..       5     144 .. 0.95

  Alignments for each domain:
  == domain 1  score: 192.8 bits;  conditional E-value: 1e-61
                     TSSSHHHHHHHHHS--S---S-SSS-SSSS-SS-S-SS-SSTTTHHHHHHHHHHHTS--TTSGGGGS----SS-SSS-------THHHHHHHHHT CS
  Ribosomal_S19e   1 tvkdVpaeelikalaeeLkksgklevPewadlvKtgsakelapededWfyvRaAsilRkvylrgpvGverlrkvYGgkkrrgvrpshfvkasgsv 95 
                     tv+dV+a+++ika++++Lk++gkle+P w+d+vKt++++el+p+d dW+yvRaA+++R++ylr++vGv+rlrkv+G++k+rg+rp+h+v+asgsv
      KKY18063.1   5 TVRDVDAQKFIKAYSDFLKRQGKLEIPGWVDTVKTSHSNELPPQDADWYYVRAAAVARHIYLRKSVGVGRLRKVHGSTKNRGSRPCHHVDASGSV 99 
                     79********************************************************************************************* PP

                     TSSS--SSS---SS.-..HHHHHTHHHHH--SS--S--XXXXX CS
  Ribosomal_S19e  96 irkilqqLeklglv.k..kekkkgrrltkkGqrlldriaeeva 135
                      rk++q+Leklg++ +  +++k+grr+t++G+r+ldria  ++
      KKY18063.1 100 DRKVMQSLEKLGVLeQdeESAKGGRRITQSGMRDLDRIAMGTV 142
                     **************633355679****************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.32s 00:00:00.80 Elapsed: 00:00:00.49
# Mc/sec: 912.11
//
Query:       KKY18064.1  [L=295]
Description: hypothetical protein UCRPC4_g05268 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   11.7   3.0        3.7    7.2   1.0    2.2  2  DUF3394   Domain of unknown function (DUF3394)


Domain annotation for each model (and alignments):
>> DUF3394  Domain of unknown function (DUF3394)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0   0.00021       3.7      82     161 ..      47     129 ..      24     146 .. 0.55
   2 ?    4.4   0.0    0.0015        27      62     151 ..     166     254 ..     157     267 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00021
     DUF3394  82 egenlegeeie.ktvalplgeeatgeerLeaaGl.tlleedgkvlvdevefgspaek.agldfdfeivevevpadrppkelvy 161
                 ++ +++++ ++    ++++++++t +   e++ +   +++d++ +++e e++s+a   ++ ++d +++++ v+ ++  +e+++
  KKY18064.1  47 QEVDISDNAVSiSSSEVDISNGQTTAISQEETEIfNSVSSDQDSQISETEINSQALTiTDSQTDISVTDLTVDVQSNGQEILF 129
                 55555555555455555555555555555555555555555555555555555553313444555555555555555555444 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0015
     DUF3394  62 selvevveelpkgselrlkvegenlegeeiektvalplgeeatgeerLeaaGltlleedgkvlvdevefgspaekagldfdfeivevevp 151
                  ++v+++ ++++++++r  +++    ++   +tv+ ++ +++t     +++Gl +    + v   +v + s a++        i++ ++p
  KKY18064.1 166 IQVVQTIIDVSQDNSIRYAMSNIL-ADNGFLQTVTCQMTDAQTLTVGADDCGLNTAIATNAVASASVGSASAASAGAAAAATGIANAAAP 254
                 68999999999*****99998765.777788999*******************8888888888888888888877666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1294  (0.0721736); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2104.51
//
Query:       KKY18065.1  [L=647]
Description: putative glycerol-3-phosphate o [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-05   24.7   0.0    0.00017   21.2   0.0    2.2  2  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.016     3e+02      34      76 ..       3      44 ..       1     102 [. 0.78
   2 !   21.2   0.0   9.6e-09   0.00017      87     134 ..     147     199 ..     105     200 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.016
  Acyltransferase 34 llyksngprnvvi.iakkellsipllgflmrllgfifidRksna 76
                     +l+k   +r+v + ia+k+  + p +g+++  +g+ +++R  + 
       KKY18065.1  3 ILKKYA-NRRVSFlIAGKS-MREPYIGTIAGYMGALPVERAMDN 44
                     555555.555555055566.556*****************4333 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 9.6e-09
  Acyltransferase  87 elleegklvviFPEGtrsregellpfkkGlvrlaakak.....kgvpivPvai 134
                      + l+ g  ++iFPEG+    +ellp k+G++ +a+ a       g+ i+P+++
       KKY18065.1 147 RELSDGGCIGIFPEGGSHDRTELLPLKAGAAIMALGALaqnpeCGLSIIPCGM 199
                      589999****************************9999999988999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 4317.59
//
Query:       KKY18066.1  [L=649]
Description: hypothetical protein UCRPC4_g05270 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.2   11.7   0.3       0.52   10.4   0.1    1.8  2  Phage_XkdX  Phage uncharacterised protein (Phage_XkdX)


Domain annotation for each model (and alignments):
>> Phage_XkdX  Phage uncharacterised protein (Phage_XkdX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   2.9e-05      0.52       1      23 [.     246     268 ..     246     273 .. 0.93
   2 ?   -2.8   0.0      0.39   6.9e+03      20      28 ..     330     338 ..     329     339 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 2.9e-05
  Phage_XkdX   1 FediKeyYdwglwtkeqvrdaVg 23 
                 ++++K+yY ++  + +q+++ V 
  KKY18066.1 246 YSKVKRYYFEKDAQVQQLQNIVA 268
                 89******************996 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.39
  Phage_XkdX  20 daVgkgkIT 28 
                 +aVg  +IT
  KKY18066.1 330 TAVGRACIT 338
                 89**99**9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.35s 00:00:01.06 Elapsed: 00:00:00.55
# Mc/sec: 3541.65
//
Query:       KKY18067.1  [L=757]
Description: putative cyclic nucleotide-binding domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.4e-35  120.6  12.0    8.4e-35  120.6  12.0    1.9  2  cNMPbd_u2     Unstructured region on cNMP-binding protein
    3.5e-34  116.7   0.0    2.2e-20   72.5   0.0    2.5  2  cNMP_binding  Cyclic nucleotide-binding domain
    0.00029   21.2   4.9        1.9    9.0   0.1    4.9  5  LRR_4         Leucine Rich repeats (2 copies)
    0.00044   20.1   0.8     0.0038   17.1   0.1    2.7  2  F-box-like    F-box-like
     0.0015   18.3   6.0     0.0069   16.2   0.1    3.9  4  F-box         F-box domain
  ------ inclusion threshold ------
      0.017   15.3   0.2        4.4    7.6   0.1    3.5  3  SAM_Ste50p    Ste50p, sterile alpha motif
        8.4    7.4   9.5         20    6.3   0.0    5.4  5  LRR_1         Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> cNMPbd_u2  Unstructured region on cNMP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.6  12.0   3.3e-38   8.4e-35       1     152 [.     307     454 ..     307     462 .. 0.83
   2 ?   -4.8   1.6         7   1.8e+04     116     122 ..     628     640 ..     614     651 .. 0.33

  Alignments for each domain:
  == domain 1  score: 120.6 bits;  conditional E-value: 3.3e-38
   cNMPbd_u2   1 irsqVEetAreRlktasdeDvemadaesstptssieelaiadlkktsarrkslpevtftepskldspk...seddeevlePsDPDPFLsvdldnlRsrs 96 
                 +++qVEetAr+Rl++asd+Dv m+d+ ++tp  +i+elai + + ++ rr+  p+vtf++  +l+ p+    +dd+ +l  sDPDPFLsv+l+++++rs
  KKY18067.1 307 VKRQVEETARTRLQSASDNDVIMQDQGETTP--AIDELAIGEKASATPRRQGTPKVTFNDF-ELSAPQrpaRNDDSAILDVSDPDPFLSVGLEKVKQRS 402
                 79***********************999999..**************************97.666666666999************************* PP

   cNMPbd_u2  97 RRgSlAPptpessressptskeessssssetssP.klkskhsltppeesearakrar 152
                 RRgSlAPp+p+++ ++  +++ ++  ++++t+ P +lk   s++     +a  kr+r
  KKY18067.1 403 RRGSLAPPPPDERPSEMRKKSASPPGTRPTTPAPgRLKRLLSSS-----SAVPKRTR 454
                 ************55555555667778889999995443332222.....22335555 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 7
   cNMPbd_u2 116 s......keesss 122
                 +      +++++s
  KKY18067.1 628 NphaaraQQQQES 640
                 2222211111112 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   8.5e-24   2.2e-20       5      87 ..       3      82 ..       2      84 .. 0.96
   2 !   41.7   0.0   3.4e-14   8.7e-11       2      88 ..     202     302 ..     201     303 .. 0.82

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 8.5e-24
                  -TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHH CS
  cNMP_binding  5 kagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellq 87
                  +a+++i+++Gd a+ +y +++G v+v  +s+dg++ + a+l++G++fGe+++l + prtat+vA+t++ l++l+++d++++l 
    KKY18067.1  3 QANDYILTEGDDAKAMYWLVRGAVAV--TSRDGES-TYAELKAGAFFGEIGILMERPRTATIVARTRCLLVSLKKEDLQKILP 82
                  689***********************..9****88.*****************99*************************985 PP

  == domain 2  score: 41.7 bits;  conditional E-value: 3.4e-14
                   EEE-TT-EEE-TTSB-SEEEEEEES-EEEE............EEETTS.....E.EEEEEE-TTEEESHHHHH.HTS--SSEEEESSTEEEEEEEHH CS
  cNMP_binding   2 rsfkagevifrqGdpadslyivlsGevrvy............rlsedg....ke.vvlavlgpGdlfGelall.tgeprtatvvAltdsellalprd 80 
                   rs+++   i++qG  ++++y+++ Gev+v             +         k  +v a+l++G++fGe+  l    +rtatv+++t +e+l+++ +
    KKY18067.1 202 RSYPPFKDIIKQGSMGQEVYFLVHGEVEVIdeyydfsnssgcS----NglssKPaNVKARLKEGQYFGEVVSLsLAPRRTATVRSVTAVECLMISGE 294
                   8999*************************99999966666652....033333313666**********777745566******************* PP

                   HHHHHHHH CS
  cNMP_binding  81 dflellqq 88 
                    + e++++
    KKY18067.1 295 VLSEFWER 302
                   *9999875 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.38   9.7e+02       3      15 ..     507     521 ..     507     553 .. 0.78
   2 ?    5.4   0.4     0.011        27      23      36 ..     587     600 ..     573     606 .. 0.66
   3 ?    3.4   0.0     0.044   1.1e+02      21      38 ..     653     670 ..     644     688 .. 0.82
   4 ?    1.5   0.0      0.18   4.5e+02       1      17 [.     655     672 ..     655     699 .. 0.60
   5 !    9.0   0.1   0.00074       1.9       1      33 [.     709     745 ..     709     755 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.38
                 --EEE--.SS.---E CS
       LRR_4   3 LevLdLs.nN.qltd 15 
                 L++LdL   N +ltd
  KKY18067.1 507 LRHLDLTpYNrKLTD 521
                 788999887756776 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.011
                 TT--EEE-.-S--- CS
       LRR_4  23 pnLkeLdLsgNnli 36 
                 +nL+e++Ls++ ++
  KKY18067.1 587 KNLEEINLSNCRKV 600
                 67777777666444 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.044
                 H-TT--EEE-.-S----- CS
       LRR_4  21 klpnLkeLdLsgNnlitd 38 
                 ++p+Lk ++Ls +  itd
  KKY18067.1 653 GCPKLKNISLSYCKHITD 670
                 699999999998866654 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.18
                 SS--EEE--SS.---E-S CS
       LRR_4   1 pnLevLdLsnN.qltdip 17 
                 p+L++++Ls + ++td +
  KKY18067.1 655 PKLKNISLSYCkHITDRS 672
                 678888888664688744 PP

  == domain 5  score: 9.0 bits;  conditional E-value: 0.00074
                 SS--EEE--SS-.--E-S-..HHH.-TT--EEE-.-S CS
       LRR_4   1 pnLevLdLsnNq.ltdipl..lek.lpnLkeLdLsgN 33 
                 ++L++L+L+++  ltd     l +  + L+eLdL ++
  KKY18067.1 709 TKLRKLCLADCTyLTDNAIvyLTNaAKELQELDLVSF 745
                 79*******9845***888665565777******665 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.28   7.2e+02       2       9 ..     185     192 ..     184     194 .. 0.85
   2 !   17.1   0.1   1.5e-06    0.0038       3      46 ..     468     511 ..     466     513 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.28
  F-box-like   2 srLPdEiL 9  
                 s LP+EiL
  KKY18067.1 185 SELPPEIL 192
                 78*****9 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 1.5e-06
  F-box-like   3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlv 46 
                  LPd +L   F++ +  dL   +lV++rW  +  + p + r+l 
  KKY18067.1 468 ALPDRVLHSLFQFFDIHDLMKFRLVSKRWMGLLTTSPHILRHLD 511
                 6****************************999877777766665 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.3      0.18   4.6e+02       2      12 ..     183     193 ..     182     194 .. 0.87
   2 !   16.2   0.1   2.7e-06    0.0069       6      34 ..     469     497 ..     467     504 .. 0.93
   3 ?   -1.4   0.0      0.92   2.4e+03      13      21 ..     505     513 ..     503     515 .. 0.89
   4 ?    0.7   0.0       0.2   5.1e+02      17      33 ..     588     604 ..     587     608 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.18
                 HHHHS-HHHHH CS
       F-box   2 tlsrLPsevlr 12 
                  +s+LP+e+l+
  KKY18067.1 183 LFSELPPEILH 193
                 69*******96 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.7e-06
                 S-HHHHHHHHHTS-HHHHHHHCTT-HHHH CS
       F-box   6 LPsevlrhILerLplsdllalrrVSkgwr 34 
                 LP+ vl+  +++ +  dl  +r+VSk+w 
  KKY18067.1 469 LPDRVLHSLFQFFDIHDLMKFRLVSKRWM 497
                 9***************************6 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.92
                 HHHHTS-HH CS
       F-box  13 hILerLpls 21 
                 hIL++L+l+
  KKY18067.1 505 HILRHLDLT 513
                 9*****986 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.2
                 TS-HHHHHHHCTT-HHH CS
       F-box  17 rLplsdllalrrVSkgw 33 
                 +L+ + l ++r+VS ++
  KKY18067.1 588 NLEEINLSNCRKVSDTL 604
                 7899999******9665 PP

>> SAM_Ste50p  Ste50p, sterile alpha motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.24     6e+02      40      58 ..     588     606 ..     576     611 .. 0.84
   2 ?    1.8   0.0      0.12     3e+02      40      58 ..     656     674 ..     651     685 .. 0.85
   3 ?    7.6   0.1    0.0017       4.4      41      57 ..     711     727 ..     705     734 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.24
                 CHHHHHHHHHHHCTTS-HH CS
  SAM_Ste50p  40 vLseltLqDCkeLcdddlk 58 
                  L+e+ L +C+ ++d  l 
  KKY18067.1 588 NLEEINLSNCRKVSDTLLA 606
                 699*********9997665 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.12
                 CHHHHHHHHHHHCTTS-HH CS
  SAM_Ste50p  40 vLseltLqDCkeLcdddlk 58 
                  L++++L  Ck ++d +++
  KKY18067.1 656 KLKNISLSYCKHITDRSMH 674
                 5899***********9997 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHHCTTS-H CS
  SAM_Ste50p  41 LseltLqDCkeLcdddl 57 
                 L  l+L+DC  L+d+ +
  KKY18067.1 711 LRKLCLADCTYLTDNAI 727
                 889***********987 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.2      0.33   8.6e+02       4      11 ..     538     545 ..     507     555 .. 0.50
   2 ?    6.3   0.0    0.0076        20       1      11 [.     588     598 ..     588     619 .. 0.83
   3 ?    0.5   0.0      0.58   1.5e+03       1      19 [.     656     672 ..     656     676 .. 0.78
   4 ?   -1.3   0.0       2.3   5.9e+03       1      10 [.     710     719 ..     710     727 .. 0.85
   5 ?   -3.7   0.1         7   1.8e+04       2       7 ..     737     742 ..     737     744 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.33
       LRR_1   4 hLdLsnnp 11 
                   ++sn++
  KKY18067.1 538 FVNISNCF 545
                 23445555 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0076
       LRR_1   1 nLrhLdLsnnp 11 
                 nL++++Lsn++
  KKY18067.1 588 NLEEINLSNCR 598
                 8*********8 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.58
       LRR_1   1 nLrhLdLsnnpllglppns 19 
                 +L+ + Ls++   +++++s
  KKY18067.1 656 KLKNISLSYCK--HITDRS 672
                 7999******9..566665 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 2.3
       LRR_1   1 nLrhLdLsnn 10 
                 +Lr+L L ++
  KKY18067.1 710 KLRKLCLADC 719
                 79***99988 PP

  == domain 5  score: -3.7 bits;  conditional E-value: 7
       LRR_1   2 LrhLdL 7  
                 L++LdL
  KKY18067.1 737 LQELDL 742
                 89***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 4845.61
//
Query:       KKY18068.1  [L=232]
Description: hypothetical protein UCRPC4_g05272 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.026   14.0   0.0    1.5  1  PIH1      PIH1 N-terminal domain


Domain annotation for each model (and alignments):
>> PIH1  PIH1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.5e-06     0.026      82     147 ..      43     109 ..      34     121 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-06
        PIH1  82 lgqaredkdkkgkkckvyDvvfhpdtlklaekdkefrklvistaleaieqkfevkLdrkelkvl.kl 147
                  + +r  +dk++k  + +D ++h + l +++ +  +  l+ +  + a++q +  +L+ +++k++ ++
  KKY18068.1  43 FTTPRLRADKSSKVRQSLDNAMHQTLLLRCSTQTVLISLLPTAPISAMKQDLLAALSSRNVKEIaSM 109
                 578999********************************************************98666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.32s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1522.91
//
Query:       KKY18069.1  [L=609]
Description: putative nima interactive protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-35  122.4   9.9    1.7e-35  122.4   9.9    2.0  2  ADIP         Afadin- and alpha -actinin-Binding
    3.4e-05   23.5   6.6    3.4e-05   23.5   6.6    1.9  2  Golgin_A5    Golgin subfamily A member 5
  ------ inclusion threshold ------
      0.026   14.4   0.4      0.026   14.4   0.4    2.4  3  DUF1635      Protein of unknown function (DUF1635)
      0.045   12.4   2.0      0.087   11.5   2.0    1.4  1  AAA_13       AAA domain
      0.093   12.5   2.8        0.3   10.8   2.8    1.9  1  Phage_Nu1    Phage DNA packaging protein Nu1
       0.11   12.9  11.5       0.25   11.7   4.4    3.1  3  DUF641       Plant protein of unknown function (DUF641)
       0.16   11.2   6.6        0.4    9.9   6.6    1.7  1  DUF3450      Protein of unknown function (DUF3450)
       0.23   11.6   6.8        1.1    9.5   2.2    2.7  2  RasGAP_C     RasGAP C-terminus
       0.43   10.7   4.6        1.3    9.3   4.6    1.8  1  Fib_alpha    Fibrinogen alpha/beta chain family
        1.1    8.4   4.0        2.1    7.5   4.0    1.4  1  TMPIT        TMPIT-like protein
        1.7    6.5   3.5        2.6    5.9   3.5    1.2  1  Prominin     Prominin
        4.6    7.6  19.2      0.091   13.2   9.6    2.7  3  Fez1         Fez1
        6.7    7.0  17.2        4.3    7.6   0.1    4.5  4  K-box        K-box region
          8    6.7  24.5          1    9.6   0.2    4.6  5  TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
        8.8    6.8   9.5        2.5    8.5   3.7    2.9  2  CCDC-167     Coiled-coil domain-containing protein 167


Domain annotation for each model (and alignments):
>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   9.9   1.4e-38   1.7e-35       1     150 [.       7     161 ..       7     163 .. 0.99
   2 ?   -3.2   0.4       6.6   7.9e+03      91     105 ..     560     574 ..     529     584 .. 0.59

  Alignments for each domain:
  == domain 1  score: 122.4 bits;  conditional E-value: 1.4e-38
        ADIP   1 enaikyINstLlsrGylrskllfdta.....tekveeniaaiinviysLlqardrdleqreslnetirkleaeierlqskierlktqleqlerelalvq 94 
                 ++a++y+N+ Ll+rG+lr+++ +d+a      +++  ++a++in++++L+ +rdr++eq e+l+ tir+l+   ++  ++i+r++ +  +++r l++++
  KKY18069.1   7 QTASAYLNNLLLARGLLRNGKSIDFArpdkaSGGTDATMAKVINLVHDLVLRRDREAEQHELLAGTIRTLRINESQHAAEIDRMQSKCDEFRRNLTAAE 105
                 589***************************99******************************************************************* PP

        ADIP  95 akerqlekklktleqklknekeelqrlknalqqiktqyahelkkkdreiekLkekl 150
                 a++r+l+++ +++e+ +k++++++qr+k++l+q++ +++ +++k+d+e+ekLk +l
  KKY18069.1 106 AQQRSLKASARKAESGAKELRDQMQRMKSTLDQVRSKCQSDVRKRDIELEKLKTHL 161
                 *****************************************************998 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6.6
        ADIP  91 alvqakerqlekklk 105
                 a+++ake+++e++l 
  KKY18069.1 560 AAAEAKEAETEAELM 574
                 344444444444433 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   6.6   2.9e-08   3.4e-05      50     158 ..      53     164 ..      25     174 .. 0.71
   2 ?   -3.3   0.1       4.1     5e+03     185     212 ..     217     244 ..     201     262 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.9e-08
   Golgin_A5  50 delkqerdllreelqklnqqieqlrte.lqdle..aqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsrikdre 145
                  +l  +rd   e+ + l ++i++lr +  q+    +++q+  +++r +l+ +e q+++ +++ +++e+  ++l+++++++++ l ++++++qs +++r+
  KKY18069.1  53 HDLVLRRDREAEQHELLAGTIRTLRINeSQHAAeiDRMQSKCDEFRRNLTAAEAQQRSLKASARKAESGAKELRDQMQRMKSTLDQVRSKCQSDVRKRD 151
                 4445567777777777888888888660222221123444555555556666666666666677888889999************************** PP

   Golgin_A5 146 keieklrnqlttk 158
                  e+ekl+  l + 
  KKY18069.1 152 IELEKLKTHLVNL 164
                 *******999775 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.1
   Golgin_A5 185 vlEalsteknslvlQLeRleqqikevqs 212
                  lEa s+e++ l++ ++R  q+++e+ +
  KKY18069.1 217 DLEATSSEHKWLLYLIKRSMQELEEMMG 244
                 4677777777777777777776666655 PP

>> DUF1635  Protein of unknown function (DUF1635)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2       6.6   7.8e+03      71      89 ..      81      98 ..      44     115 .. 0.47
   2 ?   14.4   0.4   2.2e-05     0.026       4      52 ..     123     171 ..     120     183 .. 0.91
   3 ?   -1.5   0.3       1.5   1.8e+03      75     133 ..     522     578 ..     509     584 .. 0.50

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6.6
     DUF1635 71 qqneesaslsgassiede.r 89
                 q  ++a +  ++s  de r
  KKY18069.1 81 SQ--HAAEIDRMQSKCDEfR 98
                22..3444555555444432 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.2e-05
     DUF1635   4 eelrqsLlyttleLettklkaqeelrkrdeeviqLkdlLkktikErdeA 52 
                  elr++++     L++++ k q ++rkrd e+ +Lk+ L + ++ + +A
  KKY18069.1 123 KELRDQMQRMKSTLDQVRSKCQSDVRKRDIELEKLKTHLVNLQRGKRDA 171
                 79**********************************9999998887777 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.5
     DUF1635  75 esaslsgassiederrasnnsfsssdleesivssevidptpqqqekppelldelvkdKp 133
                 +  sls  +   +e  a+  s sss     ++ ++ +  ++  ++k +e+ +el+++K 
  KKY18069.1 522 ADDSLSFEQILAEE-AAKVASSSSSAHAPRLTITQ-KLAIAAAEAKEAETEAELMANKK 578
                 45556644444444.33444444444444444444.33333333444566777777665 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.0   7.3e-05     0.087      90     172 ..      79     159 ..      51     228 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.3e-05
      AAA_13  90 esiekqekieklkkeikkleekleaaeaqlqkaekekkklekeledeawkkivkkknsalsealkglkyeekfkerllkelkk 172
                 +++  +++i++ +++ ++++++l+aaeaq++++++  +k+e+ +++    ++ ++ +s+l++  ++++++ ++ +  l++lk+
  KKY18069.1  79 NESQHAAEIDRMQSKCDEFRRNLTAAEAQQRSLKASARKAESGAKELR-DQM-QRMKSTLDQVRSKCQSDVRKRDIELEKLKT 159
                 445555666666666666666666666666666666555555443333.334.444555555544455444444444444444 PP

>> Phage_Nu1  Phage DNA packaging protein Nu1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.8   0.00025       0.3      65     115 ..      77     127 ..      52     168 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00025
   Phage_Nu1  65 eveelraaaeadldpgtieyerrrlikaqadaqelknaeakkevvelelvt 115
                  ++e + aae d      ++ rr l++a+a+++ lk + +k+e    el +
  KKY18069.1  77 RINESQHAAEIDRMQSKCDEFRRNLTAAEAQQRSLKASARKAESGAKELRD 127
                 5788899*****999*********************999998866555433 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   4.0     0.013        16      70     120 ..      84     134 ..      59     138 .. 0.85
   2 ?   11.7   4.4   0.00021      0.25      73     123 ..     119     169 ..     107     172 .. 0.72
   3 ?   -1.9   0.0       3.4   4.1e+03      99     116 ..     302     319 ..     272     327 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.013
      DUF641  70 eaeeseleaeiqeqrsllktyeitvkkleaelkakdseieeLkekLeeaek 120
                 +ae  +++++ +e r+ l + e+  ++l+a  ++ +s  +eL+++++++++
  KKY18069.1  84 AAEIDRMQSKCDEFRRNLTAAEAQQRSLKASARKAESGAKELRDQMQRMKS 134
                 26788999999***********************************99876 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00021
      DUF641  73 eseleaeiqeqrsllktyeitvkkleaelkakdseieeLkekLeeaeksnk 123
                 es  +   ++ +++  t++ + +k++++++++d e+e+Lk +L ++++ ++
  KKY18069.1 119 ESGAKELRDQMQRMKSTLDQVRSKCQSDVRKRDIELEKLKTHLVNLQRGKR 169
                 22222233346777889999***********************99998765 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3.4
      DUF641  99 aelkakdseieeLkekLe 116
                 +e++ +++ei +L+e  e
  KKY18069.1 302 EEVEIRENEIVKLREGWE 319
                 478889999999998655 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   6.6   0.00034       0.4      17     135 ..      44     161 ..      36     167 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00034
     DUF3450  17 tldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelvpllekmidrLeqfvel 115
                 t++++++     v  + +  ++ + l+   ++l  +  +  +e+++++ + ++ +r ++++e++  sl+ +  ++e  ++el   +++m ++L+q v++
  KKY18069.1  44 TMAKVINLVHDLVLRRDREAEQHELLAGTIRTLRINESQHAAEIDRMQSKCDEFRRNLTAAEAQQRSLKASARKAESGAKELRDQMQRMKSTLDQ-VRS 141
                 555555555555555555566666666666666666678889999************************************************99.567 PP

     DUF3450 116 dlPflleeRqarlakLkelm 135
                        +R+ +l+kLk+ +
  KKY18069.1 142 KCQSDVRKRDIELEKLKTHL 161
                 77777777777777777765 PP

>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.7     0.019        23      44     101 ..      58     110 ..      46     122 .. 0.74
   2 ?    9.5   2.2   0.00088       1.1      51     113 ..     107     171 ..     104     185 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.019
    RasGAP_C  44 lrekrkeElesleetlktLseknnylesqlesYkayienvleqlkkkkgklpfskqyf 101
                 +r++  e+ e l  t++tL+ +++++  +++ +++  ++ + +l++++      +q +
  KKY18069.1  58 RRDREAEQHELLAGTIRTLRINESQHAAEIDRMQSKCDEFRRNLTAAE-----AQQRS 110
                 566667778889999999999999999999999999999999998885.....22222 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00088
    RasGAP_C  51 ElesleetlktLseknnylesqlesYkayienvleqlkkkkgk..lpfskqyfkkrelkksgklp 113
                 + +sl++  ++ ++  + l++q++ +k+ +++v++++++  +k  +   k + + ++l++ ++  
  KKY18069.1 107 QQRSLKASARKAESGAKELRDQMQRMKSTLDQVRSKCQSDVRKrdIELEKLKTHLVNLQRGKRDA 171
                 5678888888889999*********************9996446766666668888887776655 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.6     0.001       1.3      29     114 ..      79     164 ..      72     168 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.001
                 CCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHH CS
   Fib_alpha  29 yekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesn 114
                  e++   ++++++++ +e++++ + ae   +++k s r++++ +k+    +++++++l++  ++ +  + +   ++++L++ l ++
  KKY18069.1  79 NESQHAAEIDRMQSKCDEFRRNLTAAEAQQRSLKASARKAESGAKELRDQMQRMKSTLDQVRSKCQSDVRKRDIELEKLKTHLVNL 164
                 67778899*************************************99************************999999999877665 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.0    0.0018       2.1       9      71 ..      85     147 ..      64     177 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0018
       TMPIT   9 kefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveel 71 
                  e+++++++ +e++++l   +++q +++ +++k +  +kel+++++++k+++++ +++  +++
  KKY18069.1  85 AEIDRMQSKCDEFRRNLTAAEAQQRSLKASARKAESGAKELRDQMQRMKSTLDQVRSKCQSDV 147
                 455666666666666666666666666666666666666666666666666553332222222 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   3.5    0.0022       2.6     235     311 ..      81     158 ..      63     183 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0022
    Prominin 235 lpaLaelerllenlkeakeqLeqvnklekeLrksgsqLrdglrgvkrdlnqalsnlCq.seeCskilssleiekldts 311
                  +  ae++r+  +  e +++L + ++ + +L+ s+++ ++g ++ +++++++ s l q +++C++  ++ +ie  +++
  KKY18069.1  81 SQHAAEIDRMQSKCDEFRRNLTAAEAQQRSLKASARKAESGAKELRDQMQRMKSTLDQvRSKCQSDVRKRDIELEKLK 158
                 456789999999999999999999999999999999999999999999888877755534889887777766444444 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   9.6   7.6e-05     0.091      22     115 ..      76     189 ..      67     245 .. 0.74
   2 ?   -0.4   0.1       1.1   1.4e+03      25      54 ..     303     332 ..     299     350 .. 0.75
   3 ?   -1.6   0.3       2.7   3.2e+03      70      87 ..     559     576 ..     507     599 .. 0.51

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.6e-05
        Fez1  22 sqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrek....vekleeelkelreelselsleeeeaa.. 114
                  + + +q + ei  +++++ e r +l++ e++ ++l++s+++ +   +++ +++qr+ks+ + +r k    v+k + el++l+++l +l++ +++a+  
  KKY18069.1  76 LRINESQHAAEIDRMQSKCDEFRRNLTAAEAQQRSLKASARKAESGAKELRDQMQRMKSTLDQVRSKcqsdVRKRDIELEKLKTHLVNLQRGKRDATgm 174
                 566778999************************************************999888887722225678889999999999987766665555 PP

        Fez1 115 ..............l 115
                                
  KKY18069.1 175 nlisiapqlrdvrpP 189
                 555555554444440 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.1
        Fez1  25 evtqklseivalkaqlrelrakleekeeei 54 
                 ev  + +eiv+l+     +  +l+e    +
  KKY18069.1 303 EVEIRENEIVKLREGWEKMAGRLKEALMMM 332
                 788899999999988888888877765555 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.7
        Fez1  70 vcenelqrkkseaellre 87 
                    +e +++++eael+ +
  KKY18069.1 559 IAAAEAKEAETEAELMAN 576
                 222222222222222222 PP

>> K-box  K-box region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   3.8     0.017        20       6      62 ..      85     142 ..      77     150 .. 0.86
   2 ?    7.6   0.1    0.0036       4.3      11      40 ..     150     179 ..     142     183 .. 0.83
   3 ?   -1.1   0.1       1.8   2.2e+03      11      45 ..     318     351 ..     308     353 .. 0.72
   4 ?    0.6   0.2      0.53   6.3e+02      13      48 ..     562     605 ..     554     607 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.017
       K-box   6 deeeelkqEvskLkkeieklqrsqRkllGedl.eslslkeLqqLEqqLekslkkiRsr 62 
                  e +++++  ++ ++++   +++qR l      ++   keL++  q+++++l ++Rs+
  KKY18069.1  85 AEIDRMQSKCDEFRRNLTAAEAQQRSLKASARkAESGAKELRDQMQRMKSTLDQVRSK 142
                 35678999999999**************975438899*******************98 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0036
       K-box  11 lkqEvskLkkeieklqrsqRkllGedlesl 40 
                    E++kLk ++ +lqr +R  +G +l s+
  KKY18069.1 150 RDIELEKLKTHLVNLQRGKRDATGMNLISI 179
                 5679********************998765 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.8
       K-box  11 lkqEvskLkkeieklqrsqRkllGedleslslkeL 45 
                 +++ + +Lk+ +  + ++ R+++ e  e+++l+eL
  KKY18069.1 318 WEKMAGRLKEALMMM-DTWRRRMIEGGETVNLEEL 351
                 666666777666554.5667778899999999998 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.53
       K-box  13 qEvskLkkeieklqrsqRkllG........edleslslkeLqqL 48 
                 +E+++ + e e + +++Rk++G           ++l+ +eL++L
  KKY18069.1 562 AEAKEAETEAELMANKKRKRTGksgigkrgRRRSTLNPEELEEL 605
                 67788888999999999999995555444445667777777776 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   5.9     0.021        26      15      85 ..      67     137 ..      59     142 .. 0.90
   2 ?    9.6   0.2   0.00086         1      13      45 ..     139     171 ..     136     180 .. 0.89
   3 ?    0.2   0.2      0.73   8.7e+02      55      97 ..     200     242 ..     196     244 .. 0.81
   4 ?    3.5   0.0     0.069        82      10      85 ..     271     330 ..     264     339 .. 0.54
   5 ?   -2.4   0.3       4.4   5.3e+03      51      78 ..     552     578 ..     530     590 .. 0.46

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.021
  TMF_TATA_bd  15 erlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlLe 85 
                  e l  +ir l +  ++   e+ r++++ de r+ + +  ++  +lk+++++ e+  kel++  +r +++L 
   KKY18069.1  67 ELLAGTIRTLRINESQHAAEIDRMQSKCDEFRRNLTAAEAQQRSLKASARKAESGAKELRDQMQRMKSTLD 137
                  5678899********************************99999999999999999999999999999985 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00086
  TMF_TATA_bd  13 lverlsseirrlEgElaslkeelerleaerdea 45 
                  + ++ +s +r++++El++lk+ l +l++ +++a
   KKY18069.1 139 VRSKCQSDVRKRDIELEKLKTHLVNLQRGKRDA 171
                  66789**********************998877 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.73
  TMF_TATA_bd  55 eneelkelkkeleelekeleelqeryetlLellGeksEeveEL 97 
                  e e+++ l++ +++l++ le+ +++++ lL l++    e eE+
   KKY18069.1 200 EQETNAFLASFVKSLNADLEATSSEHKWLLYLIKRSMQELEEM 242
                  5667777778889999999999999999999999988888885 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.069
  TMF_TATA_bd  10 svqlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlLe 85 
                  s+q+ e l +e+ rl   + s++++ + ++ e                 ++  ++e+ +l++  e++  r++++L 
   KKY18069.1 271 STQTYEDLATELNRLLEHCGSIMTNPSYVSIEE----------------VEIRENEIVKLREGWEKMAGRLKEALM 330
                  555555555555555555555555555555444................444444444444444444444444444 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 4.4
  TMF_TATA_bd  51 klmkeneelkelkkeleelekeleelqe 78 
                  +++++    ++++ke +e+e+el + ++
   KKY18069.1 552 TITQKLAIAAAEAKE-AETEAELMANKK 578
                  444333333333332.233333333333 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.7    0.0021       2.5       4      62 ..      85     140 ..      84     163 .. 0.73
   2 ?   -0.6   0.3       1.5   1.8e+03       4      33 ..     302     331 ..     300     350 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0021
    CCDC-167   4 seIdkleeklascrerLeaverrlrkeelseeeResleeEeaslkeqleenekeLksLr 62 
                  eId+++ k  ++r++L a e + r+ + s  +   +e   ++l+ q+++  + L + r
  KKY18069.1  85 AEIDRMQSKCDEFRRNLTAAEAQQRSLKASARK---AESGAKELRDQMQRMKSTLDQVR 140
                 79*********************9999988875...44444555555555555555555 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.5
    CCDC-167   4 seIdkleeklascrerLeaverrlrkeels 33 
                 +e++  e+++ ++re  e++  rl+++ + 
  KKY18069.1 302 EEVEIRENEIVKLREGWEKMAGRLKEALMM 331
                 577888888888888888888888876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1512  (0.0843326); expected 358.6 (0.02)
Passed bias filter:                      729  (0.0406604); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.49
# Mc/sec: 3740.98
//
Query:       KKY18070.1  [L=534]
Description: putative indoleaminedioxygenase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-28   99.3   0.0    2.9e-28   98.8   0.0    1.2  1  IDO       Indoleamine 2,3-dioxygenase


Domain annotation for each model (and alignments):
>> IDO  Indoleamine 2,3-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.0   1.6e-32   2.9e-28       4     381 ..      30     455 ..      27     512 .. 0.76

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 1.6e-32
                 SST-BTTTBTS.-SS--SS--G.GGHHHHHHHHTH........HHHHHTTHHHHHHHT...S----..STT--SHH......HHHHHHHHHHHHHHHHH CS
         IDO   4 dfdvsektGFlpeeaPlerLpdeyyepWeellenl........relieserlRekvrk...lpvls..tdeLksee......elrrAhlvLaflahaYv 83 
                  f v+++tGFlp++ P  +Lpd +++p  +l+e++        + l+++ +l +++++   lp l+  +d L ++e       +  A+   +fla aY 
  KKY18070.1  30 PFTVTTTTGFLPTHRPRVTLPD-VFKPLTTLVEDMpivrrdgtPGLLATYQLGDHIDNkgvLPDLTlmIDGLITDEgqrdlsAVTAAFRDYSFLASAYL 127
                 699******************9.6*******************77788888888888634445333114566554420000455667777899*****8 PP

                 HTT.....SS---S...........EE-HHHHHHHHHHHHHHTS-SS--HHH.HTTSSEEESSTTS-...SSG...GGEEES--SSTT....SSHHHHH CS
         IDO  84 wse.....gkkpse...........vlPasiavPllevsekLelpPvltYad.lvLwNfkkldeeeel..sklleldnlrilttftgt....edeewFy 159
                  +      +    +            lPa+ia P+++ ++ L++pP l Ya+   L+N++  de+++    ++ + ++l++++ f +      +e  F 
  KKY18070.1 128 LEPcwkhyN----DnpddgyglgrdELPACIAGPMVKCADILDIPPFLAYAAsYALYNYTISDENASSspINP-TYESLSLIRAFERGldpkSSEAGFV 221
                 664321133....24556********************************86368****77777665443333.57999*9*999986333367999** PP

                 HHHHHHHHHHHHHHTTHHHHHHHH.........HT....T-HHHHHHHHHHHHHHHHHHHHHHTTHHHHS-HHHHHHTHHHHH--SSSBGG..GTT-BE CS
         IDO 160 lvsvaiEargaealklmlsaldea.........re....adearvtsaLerlaevideltklLervrekcdpevFYhkiRpflaGskndaeaglpegvl 245
                 l+ + +  +   +++  +s ld++          +     d + + ++L+++ ++++ +++ ++r+ ++  p+  Y ++R f+ G +++  +  p+gv 
  KKY18070.1 222 LTHIDMVGHTPGLISGTVSLLDHLtthfnnhgpAAatiaPDPTPLVNSLKQIDSSLTAIESSMSRMWKNSLPS-HYLHFRTFIFGITSQ--TMFPHGVR 317
                 ***************9999998776555432220022334466666*********************999886.6899*******5554..458***** PP

                 ET..TT................E...SSEB-B---GGGG-HHHHHHHHHTT--TT.............S.SSHHHHHHHHHGGGS-HHHHHHHHHHHT. CS
         IDO 246 ye..gv................eegkeevrqlsGgSagQSsliqalDvfLgvehertgekaaeakkesekkkaeesFleemrkYmPgphrrFLehles. 325
                 y+   +                +++  +  +++G S +  s+i +lD +L++   ++                 ++ l+  r+Y P phr FL+h+++ 
  KKY18070.1 318 YHlpSClttptpenptplrnldASEFASHVNFRGESGANDSIIPLLDSLLQIPFPSN---------------PLTKILHAFRAYRPLPHRTFLSHIRTi 401
                 *9543399***********99866667889**********************99941...............236789******************995 PP

                 S--H.HHHHHHTT-HH...HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH..... CS
         IDO 326 aasi.relvlsaeseeeeelreaYnaaveaLkelRdkHikivtlYivlparkakkee 381
                  a++  + vl+ +s    e r    + ++ ++++R +H + +  Yi+  ++ + ++ 
  KKY18070.1 402 SAELcVPNVLAYTSF---ETRYLLMKILDHVRSFRYRHWTFAREYIIRRSKYSVATG 455
                 443314455444443...466777899*********************999866554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 3530.04
//
Query:       KKY18071.1  [L=415]
Description: hypothetical protein UCRPC4_g05275 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2883.66
//
Query:       KKY18072.1  [L=772]
Description: putative nuclear pore complex subunit nup85 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-24   86.5   0.7    2.9e-22   79.0   0.3    2.9  2  Nucleopor_Nup85  Nup85 Nucleoporin
  ------ inclusion threshold ------
       0.05   13.9   0.0       0.12   12.8   0.0    1.5  1  TetR_C_26        Tetracyclin repressor-like, C-terminal domai


Domain annotation for each model (and alignments):
>> Nucleopor_Nup85  Nup85 Nucleoporin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.3   3.3e-26   2.9e-22     107     526 ..      11     568 ..       1     571 [. 0.81
   2 ?   -0.0   0.0     0.028   2.5e+02     536     565 ..     593     623 ..     592     626 .. 0.87

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 3.3e-26
                      HHHHHHHHHHHHHTTS--..SHHHHHTTCCSS-CSSSSSGSHHHHHHHHHHHHTT-HHHHHHHHTTTTTTTHHH.............HS-HHHH CS
  Nucleopor_Nup85 107 rstllesLleWvnrsdgefppseelieevleskeeeeveehpdfWklvnqlllrGlfdqavalLelsgllelee.............fecevsn 187
                        ++++ Ll+W++    +   s + + +v++s  e + + h+ fW+++  ll+rG +++ ++l ++      +              ++ ++ +
       KKY18072.1  11 PVSMPQVLLDWLEK---HH-ISVDGALNVVRS-AEPNCTAHELFWETILGLLIRGKLKEIIQLFNQADFRHADTalddgeeepgyhgAQLQSIQ 99 
                      5678899*******...63.445555555544.5799***************************975433322200001111111114567889 PP

                      HHHHHHHHHHTT--SS............................................-HHHHHHHHHHHHHHHHHHHTS---S-HHHHHHH CS
  Nucleopor_Nup85 188 nlvedlielLkkmPvysveeglslse..................................fekkwreWksevlellqngsfseqkisgelrdnl 247
                      ++v+ + ++L++ P ++  ++ ++++                                  f+ +    ++ +++l ++   +++++   + +nl
       KKY18072.1 100 GVVSRARQILETSPAMRH-GNWQVNDsdwsmfrkkveseleyladaaegpghdeedssssFQAENFGIRDTARSLSESARRAQSNVPWTVYENL 192
                      9***************75.555555568****************************66654444445689999999999999999999****** PP

                      HHHHHHHHT-HHHHHHT-SSHHHHHHHHHHHT---T....HH.HHHHHHHHHS..............................---TTSTTHHH CS
  Nucleopor_Nup85 248 edllkilsGneskileysetWyellvglllYyiPtl....kkleylqlsakkcl.............................pedetneleql 308
                      +  +++l+G+  +i+++s++W e+  +l+ + + t          l+ s ++                               ++++ +  e +
       KKY18072.1 193 KIFYRVLLGSSAEIIAQSQDWLEATLALAVWWDGTQdeniASWS-LSVSRQSVRptgvpedpylsrlsaaflsvtdpevadsfQINTLSPTEVA 285
                      **********************************7765533333.77777777688888888888888888899999999999999999***** PP

                      HHHHHTS--GGGHHHHHHH..HHHHHHHHHHHHHHTTSS.....-----.................S---SSSTTHHHHHHHHHHHT....... CS
  Nucleopor_Nup85 309 clailegdilsvlkelesllddswfaahladLleakgll.....eeass.................eledlflreyllleyasells....... 373
                      + ++l+g ++ v+  l+s+  ++ +a+ +a++   +g +         +                 ++ + ++++  l++y+ el++       
       KKY18072.1 286 LASVLQGCVEGVIGILKSW--SLVIASAVAEIGAISGWVsptlkS---NaapsglddqdlmvlsygQDLKGISKDDILRKYSEELFEkeemidh 374
                      *******************..******************665541...24455666666777777744455566699999******98888875 PP

                      ..-TTTHHHHHHHHHS-S..HHHHHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHH.HHHHHHHHHHXXXXXXXHHH CS
  Nucleopor_Nup85 374 ..hkslWqvaigylslcp..segraaleelLprvpletnddiekllsiCaklkLpevaksickilgqrllkeg.rlgeAltwfskagdielvkr 462
                         k+ W++ai + +  +  +  ++++++lL  ++l+++d+++kl+ +C +l+L+++a+s+ +  + +l+++   +g A+ +f++a++ + +++
       KKY18072.1 375 geLKEGWELAIIVATRLNdrDLAKQTISHLLDELHLDSQDRMDKLVILCTDLGLEDQARSVSERFADHLVSTTtLYGPAMICFARAHSTNKLRT 468
                      555677*******999999999************************************************98746899**************** PP

                      HHHHHHHHHHHHHHXX....XXXXHHHH.......................HHHHHHHHHHHHHHHXXX...............XXHHHHHHHH CS
  Nucleopor_Nup85 463 iawqlfeasllegeplsedlddnlgsai.......................llsqrLsflakyreFykl...............yeeeefkeAa 518
                      +   l  +++l ++     ld++l +++                       ll+  L+ +a +r++y+l               ++  + + Aa
       KKY18072.1 469 LISLLV-SYSLVSSVA-YPLDSELDPSLsallhnpkailsniaeidpeaasLLQFHLTGYAALRKYYSLrdaqylpqssrpstlRQLARTRLAA 560
                      ***999.555555544.477777777777778******************99999**************6666666666666665556666666 PP

                      HHHHHHHH CS
  Nucleopor_Nup85 519 elLisLle 526
                      + Li+ ++
       KKY18072.1 561 KYLIAVIN 568
                      66666555 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.028
                      HHHHHHHHHHHXXXXX..XXXXHHHHHHHHH CS
  Nucleopor_Nup85 536 llLladllpllelkkd.pllseeetlellea 565
                      l+Ll ++ +ll  ++  p+++++++++ll+a
       KKY18072.1 593 LTLLGEATSLLAHNNGkPIFDKSQIFDLLRA 623
                      79**********777689**********987 PP

>> TetR_C_26  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.3e-05      0.12      48      95 ..     539     588 ..     526     598 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHTTSB-TT--HHHHHHHHHHHHHHHHHHHH..T.S---SS-HH CS
   TetR_C_26  48 elleeakkkeeireeieveataklligliEsaaEqly..lydeeeeeeve 95 
                 + l ++++ +++r+  +++ +ak+li++i+saa+ +y  lyd ++e++++
  KKY18072.1 539 QYLPQSSRPSTLRQLARTRLAAKYLIAVINSAADSIYggLYDPQRESAIQ 588
                 578889999999*************************9999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.54
# Mc/sec: 4318.40
//
Query:       KKY18073.1  [L=196]
Description: putative cytochrome c subunit vb [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-53  179.5   0.1    2.6e-53  179.1   0.1    1.1  1  COX5B     Cytochrome c oxidase subunit Vb


Domain annotation for each model (and alignments):
>> COX5B  Cytochrome c oxidase subunit Vb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.1   0.1   1.4e-57   2.6e-53       7     129 .]      51     174 ..      46     177 .. 0.95

  Alignments for each domain:
  == domain 1  score: 179.1 bits;  conditional E-value: 1.4e-57
       COX5B   7 takklaevkgeesligpgakegtvPtdleqatGleRlellgkleGidvfdmkPldasrkGtledPilvesydderyvGctGspadshkviWlkvekek. 104
                 t+  ++evk+e++l+gpgak+gtvPtdleqatGleRle+lgk++G+d+fdmkPl + rkGt edPi+v+s  de   GctGspadsh+v W+ v++++ 
  KKY18073.1  51 TMIPFEEVKSEHDLLGPGAKPGTVPTDLEQATGLERLEILGKMQGVDIFDMKPLPSDRKGTFEDPIVVKSAGDELQCGCTGSPADSHHVRWVVVSRKRp 149
                 667899********************************************************************************************9 PP

       COX5B 105 vaRcaecGsvyklkllgeeedehhh 129
                  +Rc+ecGs+yk++++g++ed h h
  KKY18073.1 150 FERCDECGSIYKMEYIGVPEDPHDH 174
                 9*****************9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1334.28
//
Query:       KKY18074.1  [L=204]
Description: putative myb dna-binding domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-16   58.1   0.2    1.5e-07   31.4   0.0    2.1  2  Myb_DNA-binding  Myb-like DNA-binding domain
    3.1e-06   27.3   0.2      0.093   13.0   0.1    2.3  2  Myb_DNA-bind_6   Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.018   14.9   0.4      0.037   13.9   0.3    1.6  1  Myb_DNA-bind_7   Myb DNA-binding like
      0.074   11.6   0.0      0.089   11.3   0.0    1.1  1  Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   3.4e-11   1.5e-07       3      44 ..     111     151 ..     109     151 .. 0.96
   2 !   24.8   0.1   4.2e-09   1.9e-05       5      45 ..     159     199 ..     157     200 .. 0.91

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 3.4e-11
                      SSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrn 44 
                      +Wt+ E++lL ++  k G +W +Iae +++Rte +++ ++++
       KKY18074.1 111 PWTAVEEQLLKDLRDK-GMSWGAIAESFPTRTEGSVKKHFYK 151
                      8***************.***********************86 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 4.2e-09
                      BHHHHHHHHHHHHHHT.TCHHHHHHHHTSS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 teeEdelLleavkkhG.nrWkkIaerlggRtekqcrsrwrny 45 
                        +E e L ea+k++  n+Wk I ++l g+ +k+c ++ r +
       KKY18074.1 159 GDDEAEALKEAIKEYEtNKWKVIGQKL-GKPAKACENYAREH 199
                      6799***********************.6********99876 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   3.4e-05      0.15       1      41 [.     112     151 ..     112     157 .. 0.87
   2 !   13.0   0.1   2.1e-05     0.093       3      37 ..     160     194 ..     158     203 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.4e-05
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwkn 41 
                     Wt+ E+++L +l  + g  W  Iae ++ Rt  +++ ++ +
      KKY18074.1 112 WTAVEEQLLKDLR-DKGMSWGAIAESFPTRTEGSVKKHFYK 151
                     9999999888775.6689*********99*******99987 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.1e-05
  Myb_DNA-bind_6   3 eeEdeiLlklvekyg.ndWknIaealnrRtpkqcfd 37 
                     ++E e+L +  ++y+ n+Wk I + l+ + +k+c +
      KKY18074.1 160 DDEAEALKEAIKEYEtNKWKVIGQKLG-KPAKACEN 194
                     789***********769**********.99999976 PP

>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3   8.3e-06     0.037       4      51 ..     105     151 ..     102     183 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.3e-06
  Myb_DNA-bind_7   4 krkktkkWskeetekFYkaLsqfGtDFsliaklfpkrtrrqlKlKFkk 51 
                     +++++++W+  e +   k L+  G+ +  ia+ fp rt   +K+ F k
      KKY18074.1 105 RQRTNTPWTAVEEQ-LLKDLRDKGMSWGAIAESFPTRTEGSVKKHFYK 151
                     4447789*999865.5799**************************987 PP

>> Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     2e-05     0.089     389     447 ..      79     137 ..      70     178 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2e-05
                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 389 laPTgsiSliagtssgiePifalvykksvtvgeflevnpvfeeeLkklglwseellkki 447
                      + P+ ++S + +   ++eP  +  +k++ t+   + v+++++++L+++g++  ++ +  
       KKY18074.1  79 IDPSMTSSTMGESLPSMEPPGSPSSKRQRTNTPWTAVEEQLLKDLRDKGMSWGAIAESF 137
                      5699*********************************************9988877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.32s 00:00:00.84 Elapsed: 00:00:00.50
# Mc/sec: 1217.85
//
Query:       KKY18075.1  [L=278]
Description: putative amino acid transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-30  106.3  27.5    1.9e-30  106.0  27.5    1.0  1  AA_permease_2  Amino acid permease
    1.2e-07   30.8  16.8    1.5e-07   30.4  16.8    1.1  1  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0  27.5   2.2e-34   1.9e-30       1     240 [.      19     271 ..      19     274 .. 0.83

  Alignments for each domain:
  == domain 1  score: 106.0 bits;  conditional E-value: 2.2e-34
  AA_permease_2   1 lsllsafalvigsv....igsgifvknlaasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkva....flsawfnwfay 88 
                    +s +s +al ++++    + s+++++ ++ sgg+  +++  i+++ig ++ ++ +aEl+s +p+ gG+y++++++ ++ ++    +l++w++  ++
     KKY18075.1  19 FSIVSIVALQLSLMatweAVSAVIAT-ALISGGAPCLFYNYIIAFIGTICIAASLAELASIWPTAGGQYHWVAHLAPENHKlfisWLTGWISIGGQ 113
                    67889999999999888855555555.4779********************************************965555223377777776666 PP

  AA_permease_2  89 vpvlasilsv...aasyllnalgp.dlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetd 180
                    ++ +as + +    +++l+++ +p ++ +++w+ +l++++++++ a+ini g k +   +n  g+l+i ++++++i++g+ + +++ +      t+
     KKY18075.1 114 LVLTASAAFAgglQFQALITLNYPdSYIPTRWQGMLFYWLVILYAAVINIWGSKALPHSNNAAGVLHIAGFVALVIVFGVMAPKHSASY---VFTE 206
                    66666655441114455555555689999******************************************************998887...4577 PP

  AA_permease_2 181 tffpngwp.gv..llgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvnia 240
                     ++++gw+ gv  l+gll +++ f G+++a++ see  ++ ++vp+a++ +++i ++++l++ ++
     KKY18075.1 207 FSNTSGWTdGVswLVGLLSTVYPFLGYDAACHLSEElpDPARNVPLAMVGSVVINGIMGLVYVLL 271
                    899999997656699*********************555559************99999987655 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4  16.8   1.7e-11   1.5e-07      20     253 ..      43     271 ..      27     277 .. 0.67

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 1.7e-11
  AA_permease  20 gvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyas....rflgpelGfviGln.......ylfswitvlaleltaasiliqfwel 106
                  + +l ++G   ++  y++a++ +++++ sl+e+a++ p +gg y++++    ++++   ++ +G++       +  s +++ +l+ + a i++++  +
   KKY18075.1  43 ATALISGGAPCLFYNYIIAFIGTICIAASLAELASIWPTAGGQYHWVAhlapENHKLFISWLTGWIsiggqlvLTASAAFAGGLQ-FQALITLNYPDS 139
                  456667777788999*****************************98761111577788999999996666655555555555555.444555555532 PP

  AA_permease 107 .vtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeegafknfis 203
                   ++  ++   +  +++++  +in+ g k+       + ++ i  ++a++iv+   ++  k ++ + f+ +++ ++      ++g          ++++
   KKY18075.1 140 yIPTRWQGMLFYWLVILYAAVINIWGSKALPHSNNAAGVLHIAGFVALVIVFG--VMAPKHSASYVFTEFSNTSG-----WTDG---------VSWLV 221
                  23333322222444444444566666666666666666666666666666662..23333333334555555555.....4555.........57889 PP

  AA_permease 204 vfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlslll 253
                  ++   v  f G+ + + +++E+ dP++++P a+   v++ +i+ +  +ll
   KKY18075.1 222 GLLSTVYPFLGYDAACHLSEELPDPARNVPLAMVGSVVINGIMGLVYVLL 271
                  99999999*****************************9877665444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1832.13
//
Query:       KKY18076.1  [L=1303]
Description: putative copper amine [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.5e-163  544.5   0.0     2e-163  544.1   0.0    1.2  1  Cu_amine_oxid    Copper amine oxidase, enzyme domain
    9.8e-11   41.2   0.7      2e-10   40.2   0.1    1.8  2  Fungal_trans     Fungal specific transcription factor domain
    1.2e-06   28.8   0.0    2.8e-06   27.7   0.0    1.6  1  Cu_amine_oxidN3  Copper amine oxidase, N3 domain
    0.00049   20.3   0.0     0.0011   19.2   0.0    1.6  1  Cu_amine_oxidN2  Copper amine oxidase, N2 domain


Domain annotation for each model (and alignments):
>> Cu_amine_oxid  Copper amine oxidase, enzyme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  544.1   0.0  4.6e-167    2e-163       1     409 [.     247     651 ..     247     652 .. 0.98

  Alignments for each domain:
  == domain 1  score: 544.1 bits;  conditional E-value: 4.6e-167
                    .----TT---SEEETTTEEEETTEEEEEEEETTTEEEEEEEEETTEEEEEEEEEEEEEEEE--SSHHHHH-EEEGGGT.-SGGG-----TTTSS-T CS
  Cu_amine_oxid   1 levvqpeGpsfkvdegnlvewqkWsfrvgfnrreGlvlhdvrykgrrilyrlslsemvvpYgdprppasrkaafDlgeyglGklansLelgcDClg 96 
                    l+v+qp+Gpsf+v++++lvewqkW+frv+fn+reG++lhd++y+gr++l+rls+sem+vpY+dprpp++rk+afD+g+ g+G++an+L+lgcDClg
     KKY18076.1 247 LNVIQPDGPSFNVKDDSLVEWQKWRFRVAFNPREGATLHDIHYDGRSVLHRLSISEMTVPYADPRPPFQRKQAFDFGDGGAGNCANNLSLGCDCLG 342
                    589**********99********************************************************************************* PP

                    T-EEEEEEEEE..TEEEEEEEEEEEEEEE-S-SEEEE-S....EEEE--EEEEEEEEEEETTEEEEEEEEE-TTS-EEEEEEEEE----EE-T... CS
  Cu_amine_oxid  97 eityldavladssgepvtiknaiCifEedagilwkHtdfrtgraevtrnreLvvrtiatvgNYdYifdyiFkqdGsievevratGilstaalaeee 192
                     i+y+d+v++  +g+p+  +n+iC++E+d+gi wkHt++rtgra+vtr+reLvv++i+t++NY+Yif+y+++q+G i+ve+ratGi+s+  +++++
     KKY18076.1 343 VIKYFDGVIIGPEGKPKISPNVICLHEQDNGIGWKHTNWRTGRAVVTRSRELVVQFIITLANYEYIFAYKLDQAGGITVETRATGIVSVVNIDPGK 438
                    ***********************************************************************************************9 PP

                    ..GG--EEETTEE---EEEEEEEEEEE-T.SSEEEEEEEEE-T..TT.T-...-EEEEEEEEEE--BGGG-EE--.-GG-EEEEEEEEEEE-.TTS CS
  Cu_amine_oxid 193 eskygtrvapgvlasiHqHlfslrvDldidgeknsvveeelvpeepelgeenpagnafkvektvletekeaaldldpeknrvlkivnenkkn.klg 287
                    +s+yg++v+ g+la++HqH+f++r+D++idg++n+v+ ee++++ p  +++np+gn ++v+++v+e++  +++d++p++nr +k+vn++kkn ++g
     KKY18076.1 439 TSEYGNVVSSGTLAQNHQHVFCIRIDPAIDGAENTVIIEESHRV-PMNKDTNPKGNFYQVQQSVVEKS--CWIDAAPQHNRIIKMVNRSKKNpVSG 531
                    99*****************************99********984.555679*****************..*******99***************** PP

                    -EEEEEEE-S----..---SS-TTTTTTTGGGG-SEEEEE--TT---S--TTGG-TTS.-.--GGGG-.S--B-SSEEEEEEEEEEEEE---GGGS CS
  Cu_amine_oxid 288 epvgYklvpssaasqlllakesslvakraefakhhlwvtkykdselyaageynnqskgep.vglakwvednesieneDlVvWvtlGltHvpraeDf 382
                    +pv+Yk++p  ++sqllla+++s++ kra fa+hh+wvtkykd+elya g+++ qs++ + +g+a+ ++++e +e+ D+VvW  +GltH+pr+eD+
     KKY18076.1 532 KPVAYKFTP--SPSQLLLADPESVQSKRALFAHHHVWVTKYKDDELYAGGRFTLQSQK-EiDGVADAAAREEAVEDGDVVVWNVFGLTHNPRVEDW 624
                    *********..56899*************************************99999.559********************************** PP

                    S-TTTSEEEEEEEEES-SSS-GGGG-S CS
  Cu_amine_oxid 383 PvmpvetvsflLkPvnFfdenpaldvp 409
                    Pvmpve ++++++P++Ff++npa+dvp
     KKY18076.1 625 PVMPVEIHQLMIRPADFFTANPAIDVP 651
                    *************************98 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.1   4.4e-14     2e-10     102     188 ..     851     936 ..     844     944 .. 0.88
   2 ?   -2.8   0.0      0.57   2.6e+03     208     247 ..    1114    1153 ..    1060    1165 .. 0.73

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 4.4e-14
  Fungal_trans 102 lyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcd 188
                   l+++  ++  l++r++g++ r + ++gLhr++ + ++++++   ++ + +  ++ww++++lD+++++ +G p  l+d +i+  LP  
    KKY18076.1 851 LFSFSVGNEVLAWRYIGLTARGCLEMGLHRRKTWDETSENFPGEID-RSWALKMWWSIYVLDRRWSFATGLPLALRDADIDGDLPLP 936
                   5677888999**************************9998888888.888889********************88999998666644 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.57
  Fungal_trans  208 lsneeksrkiasfllaLkkilskiagsllsiekqlqqrdl 247 
                    l+++ +s+ +++   +L + ++ ++++++  + ++  +++
    KKY18076.1 1114 LKSNDSSKFMSLRTRKLVQAIHRVSSKVYPSRATTAVSNS 1153
                    6777788888888888888888888888888887766655 PP

>> Cu_amine_oxidN3  Copper amine oxidase, N3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   6.2e-10   2.8e-06       3      91 ..     109     201 ..     107     205 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 6.2e-10
                      --HHHHHHHHHHHHTGGGGHHHHHHHHTTT.T---EEEE--SS-SSST.T--EEEEEEEE--SSS.....-GCGSEEE.EEEEEE--SSSGGG- CS
  Cu_amine_oxidN3   3 vlleelaeieevikelpqfkealkkrgienldkvvltpltvgyrgeksegkRllkalvyyrtesa.....nlyahPiegLellvDleakkviei 91 
                      ++++e++ + +v+ ++  fk al + ++ +  +vv+ p+  g  +e +e++R  + l++ ++++      n+ya P+  L +++D  +k+vi  
       KKY18076.1 109 LTMREFDVLVDVVSKSDLFKGALSELSLPEGFEVVIEPWPYGGPDEDEENRRYFQGLCFAQDTQTknpdsNFYAYPLP-LIPVMDAHKKEVIRV 201
                      789************************555699*******998888888***********9988777899********.************975 PP

>> Cu_amine_oxidN2  Copper amine oxidase, N2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.5e-07    0.0011       1      61 [.       4      70 ..       4     100 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.5e-07
                     HHHHHHHHHHHHHCCCCCCCCTCT-TTSEEEEEEEEE---HHHHHHH........HHCH---S-EEEEE CS
  Cu_amine_oxidN2  1 hpLdaltaaeinkvesilkssaletskknsffeveLeePdKkavlqf........lekgeppppRkAsv 61
                     hpL+al++ae++k++  + + +    + + f e+ L+eP K   l+f        l+ + p p+R A+ 
       KKY18076.1  4 HPLQALSVAETKKARDVILQLH--PGAIIDFREIYLREPSKVDLLNFlelehagkLSVDAPRPQRLARC 70
                     9*************98766666..58999******************5544444333444447777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.90u 0.36s 00:00:01.26 Elapsed: 00:00:00.54
# Mc/sec: 7274.53
//
Query:       KKY18077.1  [L=936]
Description: putative hydantoinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.9e-123  410.7   0.3   6.6e-123  410.0   0.3    1.4  1  DUF917          Protein of unknown function (DUF917)
    4.5e-33  114.8   0.5    7.4e-29  100.9   0.0    2.4  2  Hydantoinase_A  Hydantoinase/oxoprolinase
    1.2e-17   64.2   0.2    1.6e-14   54.0   0.0    3.1  4  Hydant_A_N      Hydantoinase/oxoprolinase N-terminal region
    0.00034   19.3   0.1     0.0024   16.5   0.0    2.1  2  MutL            MutL protein
  ------ inclusion threshold ------
      0.039   13.2   0.1       0.85    8.8   0.0    2.7  3  StbA            StbA protein


Domain annotation for each model (and alignments):
>> DUF917  Protein of unknown function (DUF917)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  410.0   0.3  1.8e-126  6.6e-123       1     350 []     550     919 ..     550     919 .. 0.95

  Alignments for each domain:
  == domain 1  score: 410.0 bits;  conditional E-value: 1.8e-126
                 GGHHHHHHHHHHTTTT-SS-HHHHHHHHTT-SBTT--EEEE-GGG--SEE..EEEEEEE-HHHHTT-SS-HH....HHHHHHHHHT--EEEEE-SSSSC CS
      DUF917   1 edlealatGaavLGtGGGGspysgylllrqaleegksvrvvsldelpddalvvvvgamGsptvieeklpsgdelleavealekllgrkidavislEiGG 99 
                 +dl++++tG+++LGtGGGGspy+++l+lr++l++g+ vr++s+ +l+dd++v+++g  Gsp+v++ek   g+e+le+ ++l ++++ + +avislEiGG
  KKY18077.1 550 TDLQWITTGCYILGTGGGGSPYQHMLRLREMLRAGAVVRIISPWDLQDDDVVACGGGKGSPQVSIEKP-YGNEILESQRELYEFMKVNPTAVISLEIGG 647
                 69*********************************89******************************8.99**************************** PP

                 CHHHHHHH..HHHHHT-EEESB-SSSS--SSGGGSHHHHT..T----SEEEE-SSS-EEEEEE.---HHHHHHHHHHCTTTTTEEEEEEEEE-HHHHHH CS
      DUF917 100 lNglvall..aaaklglpvvDaDgmGRAfPelqqttfava..gisltPlaladekgnvvllkkaqsdkavErllRaalvemgsfagvaaypmtgaelkr 194
                 +Ngl++l+  a ++++lp+vD+D+mGRA+P  +qtt++v+  + s+ P++++d++g+ + ++ka+++  vEr++Raal++mgs++g+a+ p++g+++k+
  KKY18077.1 648 GNGLQGLIlgATTNMNLPTVDGDWMGRAYPISHQTTPVVFqkKASMIPSCISDGNGRIMFMTKAHTELDVERAFRAALSQMGSHVGCAKGPVSGRNTKA 746
                 ********8888899*************************9999*******************999999****************************** PP

                 --SBSHHHHHHHHHHHHHTT--.....-SHHHHHHHHHH..-EEEEEEEEE--------------EEEET............EEEEEEESSSEEEEE.. CS
      DUF917 195 aavpgtlslalriGravaearea.k..dvveailealgg..gakvlfkGkivdverrteggfdvgevtiegldede.....grelkiefqNEnllaeed 283
                 ++v++t+sl++riGrava  r + +  +v+e+i++++gg  +ak+lfkGkiv+ver t++g+++gev+ie   ++       ++lki+f+NEn++a++ 
  KKY18077.1 747 WVVENTISLSWRIGRAVALSRCSnQidTVAESIVREVGGheSAKILFKGKIVGVERITKMGHAYGEVIIETSMSSGekstrRETLKIPFKNENIFAKKT 845
                 *******************99775376889***********999*************************63333224666699**************55 PP

                 ET.....-SEETTSEEEEEHHB-SSSSB-TTTT.TS-EEEEEE---GGGS...SHHHH-S-....-.....--- CS
      DUF917 284 ge.....vlatvPDlIsvldaetgepigteelryGlrVtVlalpasekwr.teeglelvgPkaFGy.dleykpl 350
                  +     +latvPDlI+v+da++ge++gt+e+ryGl V+Vl+++asekw+ t++g+e++gPk FG+ dley pl
  KKY18077.1 846 STegeeqILATVPDLICVIDAQNGEALGTQEYRYGLLVVVLGITASEKWTsTPRGIEIGGPKGFGIgDLEYIPL 919
                 4467788**********************************************************99****996 PP

>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.0     2e-32   7.4e-29       1     170 [.     151     322 ..     151     325 .. 0.93
   2 !   11.7   0.1   3.1e-05      0.11     225     289 ..     352     413 ..     340     415 .. 0.78

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 2e-32
  Hydantoinase_A   1 rtetavvnAylspilreylesvekslekrgakarlmvmqsdGglvsadearkkpvetilSGPaaGvvgaaatsklagekkvItfDmGGTstDvsl 95 
                     r ++av+nA + p   +++ s+++++   + +++l+v q dG +++ad a + p++t  SGP  +  gaa +++++ ++ + ++D+GGT+tDv l
      KKY18077.1 151 RENAAVLNASILPFACRTILSFQDAISRLKLHCPLFVTQNDGTILPADSAARLPIRTFSSGPTNSMRGAAFLTQENHDEAMMVVDIGGTTTDVGL 245
                     7899*****************************************************************************************98 PP

  Hydantoinase_A  96 i.kdgevevsle.teiagvkvrlpaldirtvgagGgsilvvdeggklrvgpesagadpgpacyrkGgteltvTDanl 170
                     + ++g ++ + + +ei+gv++++   d+r++g+gGgsi+ +d++g+l++gpes+g      +   Gg+ +t TD  +
      KKY18077.1 246 LlENGFPRQAAAySEISGVRTNFSYPDVRSIGLGGGSIIGRDKAGALSIGPESVGNGIQQKSLVFGGNVPTATDYTV 322
                     7155555544442578**********************************************************766 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.1e-05
  Hydantoinase_A 225 manavrklsvergldpkeltlvvfGGaGaqhaaalaeelgvkkvivppyagvlsalGmalAdvre 289
                     +++ ++  + + +  p++  +v +G +Ga++a+ +    g +kvi p+++g+++a+G+a+A+v++
      KKY18077.1 352 VKSMLEMFIDSMKTSPNNIPVVLVG-GGAIIAPDV--LAGASKVIKPNWCGIANAIGAATARVSA 413
                     5555555566666667766666665.588999998..789*********************9975 PP

>> Hydant_A_N  Hydantoinase/oxoprolinase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   4.5e-18   1.6e-14      49     177 ..       4     131 ..       1     132 [. 0.90
   2 !    6.7   0.0    0.0015       5.4       2      19 ..     232     249 ..     231     270 .. 0.77
   3 ?   -2.6   0.1       1.1   3.8e+03     127     158 ..     427     456 ..     407     459 .. 0.62
   4 ?   -3.4   0.0       1.9   6.7e+03      17      50 ..     700     732 ..     696     739 .. 0.74

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 4.5e-18
  Hydant_A_N  49 esiprtskidvvrmGTTvatNallerkg...ervaLittkg.frdlleigrqnrpdlfelrikkplvlyeevvevderveadgevlkpldeeevrealk 143
                 +s+++++ +++v +GTT+++Na++e ++   +rva+i   g f  ++ +g ++ p+l         ++   +  v++++e+dg+ + +++e+evr++ +
  KKY18077.1   4 QSGIDPQHVSSVTIGTTHFVNAVVEMDKsrlARVAVIRLCGpFSADIPVGVDWPPKL-------RNIICAHRGLVSGGLEIDGSLIAEVEEDEVRQQCE 95 
                 677889********************999999*****9998799*************.......4456667778************************* PP

  Hydant_A_N 144 alkaagvesiavvllhSyln..pehElrvaeiarei 177
                  +k++g++s++v  ++S++     +E++va+++r++
  KKY18077.1  96 IIKSKGIKSVVVLGIFSPIDvhYRQEEQVADMIRKL 131
                 *****************97511579*****999985 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0015
  Hydant_A_N   2 igIDvGGTfTDavaldek 19 
                 + +D+GGT TD+ +l e+
  KKY18077.1 232 MVVDIGGTTTDVGLLLEN 249
                 689********9888776 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.1
  Hydant_A_N 127 gevlkpldeeevrealkalkaagvesiavvll 158
                  +++++l e +v++a+++  ++  es+ ++ +
  KKY18077.1 427 FQIMEKLCERAVEKAVENGARR--ESVTIAEM 456
                 4566677777777777665554..66666666 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 1.9
  Hydant_A_N  17 dekeeevavlKllstpdavaegirealeevlees 50 
                 d++ + +  +K+ ++  +v++++r al+++ ++ 
  KKY18077.1 700 DGNGRIMFMTKAHTE-LDVERAFRAALSQMGSHV 732
                 555566777888888.999999999999876665 PP

>> MutL  MutL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   6.8e-07    0.0024     227     265 ..     211     247 ..     200     264 .. 0.82
   2 ?   -0.2   0.0     0.079   2.8e+02     254     357 ..     404     444 ..     383     464 .. 0.59

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.8e-07
        MutL 227 TPaAvlkavellaeeeekglgdllvvDvGGaTTdvhsva 265
                  P   ++++ +l +e+++  + ++vvD+GG+TTdv   +
  KKY18077.1 211 GPTNSMRGAAFLTQENHD--EAMMVVDIGGTTTDVGLLL 247
                 5778899999**996555..69*************7764 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.079
        MutL 254 vGGaTTdvhsvaegspekekvllklpeprakrtVegdLGmrvsaknvleeageeelareliseeelrerlenlmerpktiPkteee..laldealarea 350
                 +G+aT  v ++                                                                  +ti +t+ +  +++ e l++ a
  KKY18077.1 404 IGAATARVSAA-----------------------------------------------------------------LDTIESTDSKtmFQIMEKLCERA 437
                 45555555544.................................................................44444333321134445555555 PP

        MutL 351 velaver 357
                 ve ave 
  KKY18077.1 438 VEKAVEN 444
                 5555554 PP

>> StbA  StbA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.46   1.7e+03      86     120 ..       3      36 ..       2      37 .. 0.84
   2 ?    8.8   0.0   0.00024      0.85     160     180 ..     226     246 ..     212     263 .. 0.85
   3 ?    0.5   0.0     0.079   2.8e+02     252     287 ..     349     384 ..     327     397 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.46
        StbA  86 lksGlkpqdvdvvvtLPlseyydannqpneenier 120
                  +sG+ pq+v   vt+  +++ +a  + ++ ++ r
  KKY18077.1   3 RQSGIDPQHVS-SVTIGTTHFVNAVVEMDKSRLAR 36 
                 58********8.58999999999998888887766 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00024
        StbA 160 deleslLiiDlGGttLDvakv 180
                 ++ e ++++D+GGtt Dv+ +
  KKY18077.1 226 NHDEAMMVVDIGGTTTDVGLL 246
                 67899*************875 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.079
        StbA 252 nekvkkLkerviravsefsgythvmvvGGGaeliae 287
                 + kvk++ e  i+++++  +   v++vGGGa +  +
  KKY18077.1 349 KAKVKSMLEMFIDSMKTSPNNIPVVLVGGGAIIAPD 384
                 345555666666666666666679******976544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (936 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.36s 00:00:01.14 Elapsed: 00:00:00.51
# Mc/sec: 5481.05
//
Query:       KKY18078.1  [L=177]
Description: putative c6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1350.31
//
Query:       KKY18079.1  [L=296]
Description: putative fumarylacetoacetate hydrolase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-61  205.7   0.0    8.9e-61  205.3   0.0    1.1  1  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.3   0.0     5e-65   8.9e-61       4     217 ..      84     293 ..      82     294 .. 0.94

  Alignments for each domain:
  == domain 1  score: 205.3 bits;  conditional E-value: 5e-65
                    EEEEE--SHHHHHTTT.-SS-EEEEEEGGGE.EETTE..EE-TTSSSS-EE........EEEEEEEESS-B--T--HHHHHTTEEEEEEEEEEE-S CS
  FAA_hydrolase   4 cdglnyaehvreagkaaeeppdrhiplepvfflkrasslvgpgdpirrPagsek..ldyEvELavvigkplrevlsveeAedaiaGytllnDvsaR 97 
                    c+glnya+h+++a++  ++pp+   p    +f+k ++++  +g+++ +P++++    dyE+EL ++ig+++++v s+e+A  ++a+yt++nD+s R
     KKY18079.1  84 CVGLNYAKHIQQAKR--QPPPF---PF---IFIKANTTILDHGKDVIVPKIAQDdqADYEGELTLIIGADAKDV-SIEDALSYVAAYTVGNDISSR 170
                    99**********983..47777...55...*********************55444******************.99******************* PP

                    BGGG---..HH...HHHHTGGGEEEEEE-B--B-.STT---SS-EEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHH-B-TT-EEEEEES..... CS
  FAA_hydrolase  98 dlqaeek.apl...gwflgksfdtftpiGpwivtpdeledpedlelrlrvngeevqdsntkdmifspaeliahlsagltLepGdliltGTpsgvga 189
                    +lq++ + a     +w  +k+fdtf+p+Gp++v+ + ++dp++l+l+++vnge++qd++++d++f+ a+li++ls+g+tL+ G++i+tGTp gvg 
     KKY18079.1 171 KLQRNPDlA-GrvpQWGFSKGFDTFAPLGPCLVSSKLIGDPKELWLKTTVNGEVRQDESVSDLLFDCAYLISYLSQGTTLQKGSVIMTGTPGGVGG 265
                    ****99943.25899999*****************************************************************************9 PP

                    ..S--EE--TT-EEEEEETTTEEEEEEE CS
  FAA_hydrolase 190 eeeslkflkdgDeveveieglGelrnrV 217
                    + +++++l++g ++ev+i+++G+lrn V
     KKY18079.1 266 DMNPPQWLRPGTQMEVSITKIGTLRNGV 293
                    9*************************88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2124.09
//
Query:       KKY18080.1  [L=333]
Description: putative mfs transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-27   96.5  12.9    1.8e-27   96.2  12.9    1.1  1  MFS_1     Major Facilitator Superfamily
    2.6e-14   53.0   6.9    3.4e-14   52.6   6.9    1.2  1  Sugar_tr  Sugar (and other) transporter
      3e-06   26.0   0.5    3.9e-06   25.6   0.5    1.1  1  TRI12     Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
      0.011   14.4  11.0      0.018   13.6  11.0    1.4  1  MFS_2     MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2  12.9   3.9e-31   1.8e-27       3     226 ..      56     320 ..      52     333 .] 0.76

  Alignments for each domain:
  == domain 1  score: 96.2 bits;  conditional E-value: 3.9e-31
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslw.lllvlrvlqGlga 99 
                 l+ f + +a s +++a   +l+++++ ++s+++ llt+ +l+ ++++l++ ++s++fG r+++l++++++++  l+++ a ++ +  ll++r+l+G+++
  KKY18080.1  56 LSNFTANFAGSGFSVAEQ-ILMQQFQKNHSQVNSLLTFNFLLLGIGNLFWVPMSTKFGKRPIMLISMAMLFAI-LIWT-AkAQTFnSLLAARCLSGFAS 151
                 556666666666667766.9*****************************************999999999999.5666.4455566************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg..Wravfyilaivsllafvlfllllpeepperkrkspkeee........ 188
                 +a+ +++  +++d+f   er+ +++++ + ++ ++++gpl+g++++s+    Wr   +++a+++ + ++l+++l+pe+  +r+++++   +        
  KKY18080.1 152 SAGESIVPGIVSDMFFIHERATMLSIYVVLTAGASAVGPLVGAFVVSYSPgtWRDFSWVCAALAGFNLLLMFFLYPESSFKRPNSAHGAHStqdrtiek 250
                 **********************************************443369***************99999999999999999999888899999999 PP

       MFS_1 189 .........................kgtgpaplvpawkallkdp...........vlw..illialllfffgfsgl 226
                                                + v+ w++++++              +  +++++++ + + ++++
  KKY18080.1 251 ldkeddrpsfeyneqsdvevggvqsF---ANAEVK-WTKIWTSFikydtsiglpvA-FlrAIILVACPN-VLWTIF 320
                 99999999999888888877664441...333333.44444444222232222211.122222222222.222222 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   6.9   7.6e-18   3.4e-14      10     248 ..      55     289 ..      46     333 .] 0.72

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 7.6e-18
                 HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGG CS
    Sugar_tr  10 llfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivg 108
                  l ++   + g+  ++ +++ +++++k++s+ +     s l+++++l+G  iG lf  +++++fG+++++li+ +++++  + +a a+   ++  l+++
  KKY18080.1  55 SLSNFTANFAGSGFSVAEQILMQQFQKNHSQVN-----SLLTFNFLLLG--IGNLFWVPMSTKFGKRPIMLISMAMLFAILIWTAKAQ---TFNSLLAA 143
                 555555566666666666666777777776565.....699*******9..8********************9888876555555555...9******* PP

                 HHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS.---..HHHHHHTT-H CS
    Sugar_tr 109 RvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllfl.PES..Prylvekgke 204
                 R l+G++  +   +vP  +s +   + R ++ s+y + ++    v+  +g+++  +s   +wr + ++++++a + l+l++fl PES  +r    +g +
  KKY18080.1 144 RCLSGFASSAGESIVPGIVSDMFFIHERATMLSIYVVLTAGASAVGPLVGAFVVSYSP-GTWRDFSWVCAALAGFNLLLMFFLyPESsfKRPNSAHGAH 241
                 *****************************************************99999.9********************8766***332344677888 PP

                 HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.........HTTHHHH CS
    Sugar_tr 205 eeakevlaklrgeedadrelaeekdsleaeqeee....kaswkellss 248
                 +  +++++kl++e+d+     +e++  e +  ++    +++w ++++s
  KKY18080.1 242 STQDRTIEKLDKEDDRPSFEYNEQSDVEVGGVQSfanaEVKWTKIWTS 289
                 888888888888844322222222222222222234443444444433 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.5   8.7e-10   3.9e-06      46     240 ..      51     252 ..      31     255 .. 0.66

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 8.7e-10
       TRI12  46 faafslnvvatyfvlqasasalpnilqdvgqsensslfstlwt...tgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtll 141
                 + a+sl   ++ f      s   +il +  q + s + s l t   +   +  l    ++ +fg+rp+++++  + +   i  + a+ fn+llaa  l 
  KKY18080.1  51 LVAVSLSNFTANFAGSGF-SVAEQILMQQFQKNHSQVNS-LLTfnfLLLGIGNLFWVPMSTKFGKRPIMLISMAMLFAILIWTAKAQTFNSLLAARCLS 147
                 444555555455544333.33334444444433333333.323000233455677778899*******999988888888889999************* PP

       TRI12 142 gvaagpagas..plfvgelmsnktkflgllivsipvvvtsglspylgqrlai..qgswrwifyiyiitsaiavllivvwyyppsfaq...lhgkkvrkr 233
                 g a+  ag s  p +v +++  + +   l i  + +   s+++p +g  +     g+wr   ++   ++   +ll+   y   sf++    hg + ++ 
  KKY18080.1 148 GFASS-AGESivPGIVSDMFFIHERATMLSIYVVLTAGASAVGPLVGAFVVSysPGTWRDFSWVCAALAGFNLLLMFFLYPESSFKRpnsAHGAHSTQD 245
                 *9876.4444238899998776666666666666677788899****9775412599999999999999999999888888889975333677777666 PP

       TRI12 234 eelakld 240
                   + kld
  KKY18080.1 246 RTIEKLD 252
                 6666665 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6  11.0     4e-06     0.018     251     385 ..      76     202 ..      44     228 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4e-06
       MFS_2 251 ltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpwsmladvvDygelk 349
                 ++ + +n s+++ +l++ +++  +g ++w p+ +++gk+ ++l++++++  + +l++ ++++    +l++  ++gf+     ++ +s+++ +v +  + 
  KKY18080.1  76 MQQFQKNHSQVNSLLTFNFLLLGIGNLFWVPMSTKFGKRPIMLISMAML--FAILIWTAKAQTFNSLLAARCLSGFA----SSAGESIVPGIVSDMFFI 168
                 66777788888888888899999*****************999887665..55666777667777777777788887....555555555555555543 PP

       MFS_2 350 tGkrregvffavlsfisklatgiglgvsgllLsaf.g 385
                     ++ ++ ++++ ++  a+++g +v ++++s++ g
  KKY18080.1 169 ---HERATMLSIYVVLTAGASAVGPLVGAFVVSYSpG 202
                 ...358999*******************999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 2104.33
//
Query:       KKY18081.1  [L=334]
Description: putative gentisatedioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-22   79.0   0.3    2.5e-15   55.9   0.2    2.9  4  Cupin_2       Cupin domain
    1.3e-05   25.2   0.1      0.012   15.6   0.2    2.8  2  AraC_binding  AraC-like ligand binding domain
    0.00081   19.5   0.0     0.0033   17.6   0.0    1.8  2  CENP-C_C      Mif2/CENP-C like
     0.0028   17.3   0.0        2.5    7.8   0.0    2.8  3  Cupin_3       Protein of unknown function (DUF861)
     0.0083   15.8   0.1      0.017   14.8   0.1    1.5  1  DMSP_lyase    Dimethlysulfonioproprionate lyase
  ------ inclusion threshold ------
      0.057   13.6   0.2       0.17   12.0   0.0    1.8  2  ARD           ARD/ARD' family
        0.1   12.2   0.0         17    5.0   0.0    2.2  2  Cupin_1       Cupin


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.8   4.5e+03      38      48 ..      62      72 ..      58      78 .. 0.81
   2 ?   -3.9   0.0       4.5   1.2e+04       2      12 ..      81      91 ..      80      93 .. 0.79
   3 !   55.9   0.2   9.8e-19   2.5e-15       2      69 ..     101     168 ..     100     170 .. 0.97
   4 !   19.9   0.0   1.8e-07   0.00045       5      58 ..     245     297 ..     242     307 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.8
                EEEEETTEEEE CS
     Cupin_2 38 eveleaGdsvy 48
                ++ l+aGd++ 
  KKY18081.1 62 PYLLRAGDLIT 72
                68899***986 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 4.5
                EEEEETTEEEE CS
     Cupin_2  2 lvelppGesap 12
                l+ + pG++ap
  KKY18081.1 81 LMLVNPGREAP 91
                78899999877 PP

  == domain 3  score: 55.9 bits;  conditional E-value: 9.8e-19
                 EEEEETTEEEEEECSSSEEEEEEEEESEEEEE.ECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEE CS
     Cupin_2   2 lvelppGesapshrHpgedeffyVleGegelt.vdgeeveleaGdsvyfpagtpHrfrNtgdeparllv 69 
                 l+ + p+e+ap+hrH+   ++++++eG g +t v g++v++++Gd++++p++  H+++ +g++p+ +l+
  KKY18081.1 101 LQLVMPNETAPAHRHTAF-AMRFIIEGNGGFTaVHGRRVKMNRGDVILTPTWNYHDHGKDGSGPMIWLD 168
                 7899*************8.************************************************97 PP

  == domain 4  score: 19.9 bits;  conditional E-value: 1.8e-07
                 EETTEEEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEE CS
     Cupin_2   5 lppGesapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfr 58 
                 l  G+s+p+   + +  +++V++G g  +++ge+++ +a d++ +pa+   ++ 
  KKY18081.1 245 LNAGRSSPAVQETAS-SVYHVVKGSGYTEINGEKFKWKANDTFCIPAWNKYQHF 297
                 667888888888888.9*******************************988875 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2   4.5e-06     0.012      15      65 ..     109     160 ..     104     258 .. 0.82
   2 !    6.6   0.0    0.0027         7      26      54 ..     261     289 ..     252     302 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.5e-06
                   SEEEETT-SEEEEEEEEE-EEE.EETTEEEEE-TT-EEEE-TTS-EEEEE-T CS
  AraC_binding  15 sfpphvhdeyvihyvteGtgrl.rlngrtydlgpGdlfLlppgepHdyesds 65 
                     p h+h  +    ++eG+g +  + gr++ ++ Gd++L p    Hd   d+
    KKY18081.1 109 TAPAHRHTAFAMRFIIEGNGGFtAVHGRRVKMNRGDVILTPTWNYHDHGKDG 160
                   4477************************************987777766665 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0027
                   EEEEEEE-EEEEETTEEEEE-TT-EEEE- CS
  AraC_binding  26 ihyvteGtgrlrlngrtydlgpGdlfLlp 54 
                   +  v++G+g+ ++ng+ +  +++d f +p
    KKY18081.1 261 VYHVVKGSGYTEINGEKFKWKANDTFCIP 289
                   5789**********************998 PP

>> CENP-C_C  Mif2/CENP-C like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.95   2.4e+03      28      68 ..     112     153 ..      99     156 .. 0.70
   2 !   17.6   0.0   1.3e-06    0.0033      32      70 ..     257     295 ..     245     307 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.95
                 EE--SEEEEEEEEESEEE.EEETTEEEEEETT-EEEE-TT-E CS
    CENP-C_C  28 knskkatlvFyViqGrve.vtvsktsfvigkgsvFqvPagne 68 
                  + + a+ + ++i+G+   + v++ +  + +g+v + P  n+
  KKY18081.1 112 AHRHTAFAMRFIIEGNGGfTAVHGRRVKMNRGDVILTPTWNY 153
                 555666666677777754145889999999999999998886 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.3e-06
                 SEEEEEEEEESEEEEEETTEEEEEETT-EEEE-TT-EEE CS
    CENP-C_C  32 katlvFyViqGrvevtvsktsfvigkgsvFqvPagneys 70 
                  a+ v++V++G   +++++++f     ++F +Pa n+y+
  KKY18081.1 257 TASSVYHVVKGSGYTEINGEKFKWKANDTFCIPAWNKYQ 295
                 56779*********************************7 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.4   3.5e+03      44      55 ..      61      72 ..      57      77 .. 0.79
   2 !    7.8   0.0   0.00099       2.5      29      59 ..     121     151 ..     108     158 .. 0.88
   3 !    6.1   0.0    0.0035         9      24      60 ..     253     292 ..     246     299 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.4
                EEEEEETTEEEE CS
     Cupin_3 44 etvelraGDlvv 55
                +++ lraGDl++
  KKY18081.1 61 KPYLLRAGDLIT 72
                56779****986 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00099
                 EEEEECEEEEEETTTEEEEEETTEEEEE-TT CS
     Cupin_3  29 cyileGevkvtpeggetvelraGDlvvlpkg 59 
                  +i+eG+  +t+ +g +v++  GD++  p +
  KKY18081.1 121 RFIIEGNGGFTAVHGRRVKMNRGDVILTPTW 151
                 39***********************999976 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0035
                 SSEEEE....EEEECEEEEEETTTEEEEEETTEEEEE-TTE CS
     Cupin_3  24 eedEfc....yileGevkvtpeggetvelraGDlvvlpkgl 60 
                   +E++    ++++G    +  +ge+++ +a D + +p++ 
  KKY18081.1 253 AVQETAssvyHVVKGSGYTEI-NGEKFKWKANDTFCIPAWN 292
                 4567777777*****987777.*****************96 PP

>> DMSP_lyase  Dimethlysulfonioproprionate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   6.6e-06     0.017      85     153 ..      87     155 ..      80     165 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.6e-06
  DMSP_lyase  85 GprglekrddvalGlvllaPkvrYPdHhhaa.eelYlvlsggaefrqgeaewlsrgiGevifnepgikha 153
                 G +++   d+v +Gl l  P+ + P H+h+a +  +++  +g  f +  +  ++++ G+vi  + ++ h 
  KKY18081.1  87 GREAPYTTDTVYAGLQLVMPNETAPAHRHTAfAMRFIIEGNG-GFTAVHGRRVKMNRGDVILTPTWNYHD 155
                 556788999**********************66666666666.7888888889***********999985 PP

>> ARD  ARD/ARD' family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.8e-05      0.17      88     133 ..     113     154 ..     108     159 .. 0.87
   2 ?   -2.1   0.0       1.6     4e+03      95     114 ..     261     280 ..     256     309 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.8e-05
         ARD  88 hlhedeeirliveGtgyFd.vrskdeawirvlvekGDLivlPagiyh 133
                 h h+ + +r+i+eG+g F  v+ +     rv +++GD i+ P   yh
  KKY18081.1 113 HRHTAFAMRFIIEGNGGFTaVHGR-----RVKMNRGDVILTPTWNYH 154
                 99***************9636665.....89**********987777 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.6
         ARD  95 irliveGtgyFdvrskdeaw 114
                 +  +v+G+gy  ++ +  +w
  KKY18081.1 261 VYHVVKGSGYTEINGEKFKW 280
                 56789999999988877777 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0067        17      45      93 ..     109     150 ..      93     154 .. 0.74
   2 ?    5.0   0.0    0.0066        17      29      69 ..     236     273 ..     228     304 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0067
                 EEEEEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-T CS
     Cupin_1  45 lllPhyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPa 93 
                   + h h  a+ + ++++G g   ++v g     ++ k+++Gdv+  P 
  KKY18081.1 109 TAPAHRH-TAFAMRFIIEGNGG-FTAVHG-----RRVKMNRGDVILTPT 150
                 5677778.88888888888887.444444.....3566*******9995 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0066
                 HSSTEEEEEEEE.TTEEEEEEEESSS-EEEEEEESEEEEEE CS
     Cupin_1  29 ntlgisaarvdlepgglllPhyhpnateiayvlqGegrvgf 69 
                 +tlg+sa r++    g ++P +   a+++  v++G+g++++
  KKY18081.1 236 KTLGGSAERLNA---GRSSPAVQETASSVYHVVKGSGYTEI 273
                 677777777777...8899*******************776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.51
# Mc/sec: 1971.26
//
Query:       KKY18082.1  [L=691]
Description: putative aldehyde dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-112  376.4   0.1     2e-112  376.0   0.1    1.0  1  Aldedh    Aldehyde dehydrogenase family
     0.0066   15.9   0.4      0.013   15.0   0.1    1.6  2  DUF1487   Protein of unknown function (DUF1487)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  376.0   0.1  2.3e-116    2e-112      22     462 .]     248     682 ..     237     682 .. 0.95

  Alignments for each domain:
  == domain 1  score: 376.0 bits;  conditional E-value: 2.3e-116
                 EEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH..HSEEEEEE.CTT CS
      Aldedh  22 kvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelaek..legevlps.seg 117
                 +++ a+a+   +a+++A++af  w+++p+++R+ ++ k+a++++e++  + ++   e+      ++ +v+ ai v++ +a++++   ++g++ ps  +g
  KKY18082.1 248 SFQGADAKLTLEAIESAERAFGVWSQTPLPHRRLLFFKMAQIIRENEAAIRKMVKEEIHCGDDWTDIQVHGAIGVIEETAAAMSSetMNGQIPPSiVTG 346
                 67889999999**********************************************9999999999**********99998655459999988877** PP

                 EEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTC...CHHHHHHH-TTESEEEEES CS
      Aldedh 118 klalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgs...evgealvehpevdkvsftG 213
                 +  +v++eP+Gv++  +PWN Pl+l  +++++ la+GNtv++K +e +p + l +a+l++ +g+P+g++n++ g+ +   e+ ++ ++hp + kv+ftG
  KKY18082.1 347 AYPMVFNEPYGVILGMAPWNAPLILGFRSICAPLATGNTVIFKGSEFSPRTHLFIANLIRTVGFPPGACNFILGRPQdavEIFNTCISHPAIGKVNFTG 445
                 ************************************************************************887551115566779************ PP

                 -HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-TTSTT-SB---S CS
      Aldedh 214 stevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgdpldedtdvGPli 312
                 st+vgr ia++aak+lk v+lElGGkn  ivledaDl+ka+++ +++a++n+GQvC+a+  +lv+es+++ f++ + + ++++        +t+ G +i
  KKY18082.1 446 STAVGRSIATTAAKHLKGVLLELGGKNISIVLEDADLEKAARKSIEAATINNGQVCMATDTILVHESVAKSFTSVVHQVFASM--------KTQQGHVI 536
                 *****************************************************************************999888........578899** PP

                 SHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEEEEE-SBHHHHHH CS
      Aldedh 313 seaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaagvftkdleraer 411
                 s+++++++ +++e+a++ gak+        +  ++g++v  t+++n+++d++ +  E+FGPV+++ ++++++++++ + +t yGL++++f+++ +ra++
  KKY18082.1 537 SSKSRSNISQVLEDAVKTGAKVTQPP----STSSHGNLVPFTLIENLPHDSSYHAIETFGPVFAIHPIDTDDDIVKFVKATGYGLSSSIFSRNHNRAMK 631
                 **********************9954....7789***************************************************************** PP

                 HHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 412 vaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 +a+rl++G v+iN  +++++++lp+gGv +Sg+Gr+gg ++l+e+t++kt+
  KKY18082.1 632 LARRLNVGAVHINGGSVHDESNLPHGGVANSGYGRFGGVWALREFTRTKTI 682
                 *************************************************96 PP

>> DUF1487  Protein of unknown function (DUF1487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.72   6.4e+03      94     121 ..     128     155 ..      96     165 .. 0.62
   2 !   15.0   0.1   1.4e-06     0.013       8      77 ..     474     544 ..     470     649 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.72
     DUF1487  94 akasPilVldvthsflgdkptgvvTlht 121
                    sP+  ++ + +++ +  + ++T+ t
  KKY18082.1 128 FAISPVTLYNSSTTYVDEMLALIITVLT 155
                 3445666666666666665555555554 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.4e-06
     DUF1487   8 mvifedgDlnsalealves..lkePfaegavatvlveesirdefvervrsklkplseevaeHpsylkaleki 77 
                  +++ed+Dl++a+++ +e+  +++   + a  t+lv+es++ +f   v++ +  ++++ + H    k+ ++i
  KKY18082.1 474 SIVLEDADLEKAARKSIEAatINNGQVCMATDTILVHESVAKSFTSVVHQVFASMKTQ-QGHVISSKSRSNI 544
                 589**********99998622566666777779*******************999987.4444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.55
# Mc/sec: 3808.84
//
Query:       KKY18103.1  [L=514]
Description: putative transcriptional regulatory protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-13   51.5   6.6    1.3e-13   51.5   6.6    2.6  2  Sds3      Sds3-like


Domain annotation for each model (and alignments):
>> Sds3  Sds3-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   1.2     0.038   6.7e+02     156     204 ..     108     156 ..      16     203 .. 0.55
   2 !   51.5   6.6   7.1e-18   1.3e-13       2     132 ..     324     460 ..     323     500 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.038
        Sds3 156 nsdsdflqelsd......leeLqallfggepgkenkekkkrkastrestksapgl 204
                  ++ + ++++sd      l         +ep +++ +++++ a+++es+++a++l
  KKY18103.1 108 DNENEADDQFSDsemsspL------ASLEEPLDNEVDHQESDAEQSESDEEATEL 156
                 3444555666663332221......222333333344444444444443333332 PP

  == domain 2  score: 51.5 bits;  conditional E-value: 7.1e-18
        Sds3   2 leklskiessFaelRDklYrerLteLqteltllq..qGthpellrklrdleeerDaeLkrlrlreeyqlkriekefkadiekakqeheklvkllkekly 98 
                 ++ l ++e++Fa lRDklY+er+ ++ ++l +l+  q t++e+l+kl+ + + rD++    ++    ++++++++  a++ ++++ +++ v++++ek +
  KKY18103.1 324 MDSLVELEKQFAILRDKLYNERIGDINKQLLQLNgpQPTNSEYLEKLQYVIRHRDEKQDYEHKLLAFKIQSLKTKSVAERSQIHTAYYQTVRDIREKYL 422
                 68899****************************977889************************************************************ PP

        Sds3  99 eelekkikrLkeeklllDlanansl....kktrshta.g 132
                 +  + + +++++++ + D  ++ s+    +++rs++  +
  KKY18103.1 423 DLANDQFYKIQRDRFKPDE-SMPSYsipfPERRSQQItQ 460
                 ******************8.6666688886666666541 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1549  (0.0863963); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.10u 0.38s 00:00:01.48 Elapsed: 00:00:00.57
# Mc/sec: 2738.51
//
Query:       KKY18104.1  [L=509]
Description: putative nucleolar protein 12 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-14   51.4   1.3    4.3e-10   39.3   0.0    3.1  3  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
  ------ inclusion threshold ------
       0.15   12.2   0.0        4.4    7.5   0.0    2.6  2  RRM_7     RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   7.7e-05      0.69      42      69 ..     265     292 ..     251     293 .. 0.88
   2 ?   -3.3   0.1      0.92   8.2e+03       1       7 [.     309     315 ..     309     318 .. 0.85
   3 !   39.3   0.0   4.8e-14   4.3e-10      12      64 ..     342     394 ..     341     396 .. 0.96

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 7.7e-05
                 EEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  42 afVeFeskedAekAlealngkklggrel 69 
                 a+V + ++ +A+kA + lng+ + +r l
  KKY18104.1 265 AYVVYSTEIAARKAARLLNGTVVLQRHL 292
                 9********************9999876 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.92
                 EEEESET CS
       RRM_1   1 lfVgnLp 7  
                 +fVgnL 
  KKY18104.1 309 VFVGNLG 315
                 79***95 PP

  == domain 3  score: 39.3 bits;  conditional E-value: 4.8e-14
                 HHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEE CS
       RRM_1  12 eeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkkl 64 
                 ee L + F+k G ++s+++vrd  t+  kgfa+V+F+++ + e+Al  +n+kk+
  KKY18104.1 342 EEGLWQTFGKAGLVESVRVVRDkVTRVGKGFAYVQFKDENSVEAALL-YNEKKF 394
                 788*******************************************9.999987 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.034     3e+02      23      63 ..     235     275 ..     188     290 .. 0.78
   2 ?    7.5   0.0   0.00049       4.4      44      67 ..     364     387 ..     340     412 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.034
       RRM_7  23 kefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksv 63 
                 ++ + +    Pkka ++kk+ ++ +++++ +++v+++e + 
  KKY18104.1 235 RSTAYADAGLPKKAAYAKKELMEATTKSTNAYVVYSTEIAA 275
                 44455556678888777777777888888999999888665 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00049
       RRM_7  44 enskaakgyvflvfedeksvkaLl 67 
                 +++++ kg++++ f+de+sv+a l
  KKY18104.1 364 KVTRVGKGFAYVQFKDENSVEAAL 387
                 3456779*************9755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       853  (0.0475766); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.50
# Mc/sec: 3048.60
//
Query:       KKY18105.1  [L=733]
Description: putative exonuclease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.48
# Mc/sec: 4547.18
//
Query:       KKY18106.1  [L=1028]
Description: putative dolichyl-phosphate-mannose-protein mannosyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-79  267.2  14.3    2.3e-79  266.5  14.3    1.4  1  PMT       Dolichyl-phosphate-mannose-protein mannosyltransfer
    9.9e-69  230.9   8.2    1.8e-68  230.1   1.2    3.1  3  PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltra
    5.5e-19   68.7   0.1    1.8e-18   67.0   0.1    1.8  2  MIR       MIR domain
    4.7e-05   23.7   6.1    4.7e-05   23.7   6.1    3.8  4  PMT_2     Dolichyl-phosphate-mannose-protein mannosyltransfer
  ------ inclusion threshold ------
       0.27    9.7   0.7        1.2    7.6   0.1    2.1  2  DUF5357   Family of unknown function (DUF5357)


Domain annotation for each model (and alignments):
>> PMT  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.5  14.3   6.4e-83   2.3e-79       2     244 ..     297     551 ..     296     552 .. 0.96

  Alignments for each domain:
  == domain 1  score: 266.5 bits;  conditional E-value: 6.4e-83
         PMT   2 iltllallirlwrlslpnsvvfdevhfgk......fasdYlehsffmdvhpplgkmllalggyLagkdgnftfesigaeyypenvpyvslRlfsallgs 94 
                 ++t l++++r+w +s pn+vvfdevhfgk      fas+Yl++++f+dvhpp+gk+l+al g+L g+dg+f f++ig++y +++vpyv++R+++al+gs
  KKY18106.1 297 VITTLSFITRFWGISHPNEVVFDEVHFGKvnacchFASYYLQRTYFFDVHPPFGKLLFALMGWLVGYDGHFHFDNIGDSYITNQVPYVAFRALPALMGS 395
                 6899************************87777778*************************************************************** PP

         PMT  95 livplvyltllelgfskltallaallvllenslitlsryilldspLlfftllsmyclvkfe..rkapfsrswwlwllltgvalglavsvKwvglftvll 191
                 l+vp v+l++ e+g+s  +a+ aa lvl++n++i ++r+illd++L+ff+ ls++ +++f+  r++p+ r+ww+wllltgv++++++s+K+vg+ft++ 
  KKY18106.1 396 LTVPTVFLIMWESGYSLPAAITAAGLVLFDNAHIGQTRLILLDATLVFFMSLSVLGYIRFYkqRHEPLGRKWWKWLLLTGVSMSCVISTKYVGAFTFFT 494
                 *************************************************************************************************** PP

         PMT 192 vgllliwelwqllg..dkslllksi..vkhllaralaliviPvtlylavftvhfwll 244
                 +g  ++++lw ll   +k ++l      kh+ ar++ li++P+++yl++f vhf +l
  KKY18106.1 495 IGCAVLIDLWDLLDvdRKNGPLTLTdfGKHFGARVVGLIIVPFFFYLFWFQVHFAIL 551
                 *************988666666544779**************************987 PP

>> PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.1   4.1e+03      23      40 ..     461     477 ..     455     482 .. 0.71
   2 !    3.9   0.1    0.0095        34     124     178 ..     485     547 ..     478     560 .. 0.74
   3 !  230.1   1.2   4.9e-72   1.8e-68       1     196 [.     790    1020 ..     790    1022 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.1
    PMT_4TMC  23 hpyaSepyeWplllrgis 40 
                 +p+  ++++W+ll+ g+s
  KKY18106.1 461 EPLGRKWWKWLLLT-GVS 477
                 566679****8764.555 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0095
    PMT_4TMC 124 hYlpAllfailllaalldfllkslkkslkkk..........klvklivvvvllvlviavFiffsp 178
                  Y++A+ f ++ +a+l+d +   l+  +k +          +  +++v ++++ + ++ F+f   
  KKY18106.1 485 KYVGAFTFFTIGCAVLIDLWD-LLDVDRK-NgpltltdfgkHFGARVVGLIIVPFFFYLFWFQVH 547
                 6******************94.4444443.35899*99986666666666666677777777554 PP

  == domain 3  score: 230.1 bits;  conditional E-value: 4.9e-72
    PMT_4TMC    1 FlkkflelqkamltsnnalteshpyaSepyeWplllrgisywtkneekkqiyllGNpvlwwlstiallvfvllllalllrrqrgvkdleeeetr..l 95  
                  Flkk++elq+am+ +nnalt shpyaS+p++Wp+llrg+s+wt+n++++qiy+lGNp+++w+++++l+vf+++++a++l+ +rgv++l +++tr  l
  KKY18106.1  790 FLKKYFELQRAMFYHNNALTASHPYASQPFQWPFLLRGVSFWTQNDTRQQIYFLGNPIGYWIASSLLAVFAGVIAADQLSLRRGVDAL-DRRTRthL 885 
                  9***************************************************************************************.4444446* PP

    PMT_4TMC   96 lnsglflllgwalhylPfflmgRvlflhhYlpAllfailllaalldfllkslkkslkkk..................................klvk 158 
                  +ns++f++l+wa+hylPf+lmgR+lflhhYlpA+l+++l+++al++f++ +++  l+                                     l +
  KKY18106.1  886 YNSTGFFFLCWAAHYLPFYLMGRQLFLHHYLPAHLASCLVTGALIEFIF-NVDPVLDDLdadsiakkegikkkvpekarrafsnardrlkgqsLLGT 981 
                  ************************************************9.666666444799*****************************988899 PP

    PMT_4TMC  159 livvvvllvlviavFiffspltyGlpgts.eevkklkwl 196 
                  +++++v+l+++++ ++ff+pltyG pg+s +ev ++kwl
  KKY18106.1  982 WAATGVILAAALWGWFFFLPLTYGRPGLSvDEVLRRKWL 1020
                  **************************************8 PP

>> MIR  MIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0005       1.8      62      93 ..     577     607 ..     567     613 .. 0.81
   2 !   67.0   0.1   5.2e-22   1.8e-18      12     172 ..     598     751 ..     588     763 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0005
         MIR  62 rgglikwgkvyRlkHlaTgryLaseeekkspl 93 
                 +  +i++ + + l+H  T+ yL+s+ + + pl
  KKY18106.1 577 NAVTINYYDSITLRHKETKVYLHSHPD-RYPL 607
                 5667889999***************99.6666 PP

  == domain 2  score: 67.0 bits;  conditional E-value: 5.2e-22
         MIR  12 fHshqdeyltiseqqqkqevflritlypsadaanssraLWeievvqkd...awrgglikwgkvyRlkHlaTgryLaseeekksplseseddqkevsayg 107
                  Hsh d+y+    + + +++ +++t yp  d +n+    W i + qk    +     +++g+v+ l+Hl T+ yL s++   sp + ++++ ++v  + 
  KKY18106.1 598 LHSHPDRYPLRYDDGRISSQGQQVTGYPFNDTNNH----WQILPMQKFppgEELNHPVRNGDVVQLRHLVTDTYLLSHDV-ASPYYPTNQEFTTVAEDL 691
                 4********9999999999999*************....********655444556789*********************.*******99988888888 PP

         MIR 108 legfegdnDkveifekksttgmksaklvprdsyvrlqHvvtgcwLhstsvklkkekfekvqqkvi 172
                 + g +++    + fe k ++g++++++++ +  +rl H  t+ ++++++++l+++ f+  q ++ 
  KKY18106.1 692 ALGERQN---DTFFEIKIEQGKAKQEFKSLSGQFRLVHFPTKVAMWTHTTPLPDWAFK--QAEIN 751
                 8888665...8999999****************************************9..77764 PP

>> PMT_2  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   3.8       0.1   3.7e+02      81     152 ..      54     131 ..      43     138 .. 0.81
   2 ?   -2.4   0.0       1.3   4.8e+03      95     118 ..     286     309 ..     281     313 .. 0.79
   3 !   23.7   6.1   1.3e-08   4.7e-05      22     132 ..     384     502 ..     376     543 .. 0.83
   4 ?   -3.1   0.1       2.2   7.9e+03      29      48 ..     893     912 ..     887     933 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.1
       PMT_2  81 lwalalylllraleknklkywllagvlfGlgflsKytaallliaall....yllis.arrilkekkpyl.alllalll 152
                 l++++++++l  l +  l+y+l + +  G+gf s   ++l ++++ +     ll s  + +++ + p +   +l+l++
  KKY18106.1  54 LYCFSALFFLLNLVSTALSYFLPLILEGGMGFSSNQAILLSAPPYYYaaipVLLSSfLGDHFRLRAPVIiFNALCLIA 131
                 578889999999999999*************************97777677788888777777777777556666655 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.3
       PMT_2  95 knklkywllagvlfGlgflsKyta 118
                 k ++ y l+++v+ +l+f ++++ 
  KKY18106.1 286 KSEWDYKLALAVITTLSFITRFWG 309
                 455888899999999999999876 PP

  == domain 3  score: 23.7 bits;  conditional E-value: 1.3e-08
       PMT_2  22 lairlvsalagvltilllyllarrlfg.kraallaalllavvplfvalsalftpdaplvllwalalylllrale.......knk.lkywllagvlfGlg 111
                 +a+r ++al+g+lt+  ++l++ ++     aa++aa l+ +    +  ++l+ +da+lv++++l+++ ++r+ +       + k +k++ll+gv++   
  KKY18106.1 384 VAFRALPALMGSLTVPTVFLIMWESGYsLPAAITAAGLVLFDNAHIGQTRLILLDATLVFFMSLSVLGYIRFYKqrheplgR-KwWKWLLLTGVSMSCV 481
                 688999***************999866467777777777777766777779999********************88777644.459999********** PP

       PMT_2 112 flsKytaallliaallyllis 132
                 + +Ky  a+  +++  ++li+
  KKY18106.1 482 ISTKYVGAFTFFTIGCAVLID 502
                 ************888899887 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 2.2
       PMT_2  29 alagvltilllyllarrlfg 48 
                 +l+ +  +l +yl+ r+lf 
  KKY18106.1 893 FLCWAAHYLPFYLMGRQLFL 912
                 56666666677777777764 PP

>> DUF5357  Family of unknown function (DUF5357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       0.1   3.6e+02      51     120 ..     121     187 ..      98     206 .. 0.73
   2 ?    7.6   0.1   0.00033       1.2      54     101 ..     819     867 ..     815     874 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.1
     DUF5357  51 ialvgWlFliagtawyttddplrvpgtflpvga.litgflvsvfafgeeedeitprtivlwptisavitai 120
                 + ++  l liag+a++    +++v      vg+ + tg+ vs +a  +  +  + +     +t++a +ta 
  KKY18106.1 121 VIIFNALCLIAGIAMLGFPSQVTVR----YVGTyFATGAYVSNWAALNAYQANNITGQWKRATVAAAVTAC 187
                 5566778899999999888888887....566524688889999888776666555566677777777775 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00033
     DUF5357  54 vgWlFliagtawyttdd.plrvpgtflpvgalitgflvsvfafgeeede 101
                 + W Fl+ g+++ t++d   ++   + p+g +i + l++vfa +   d+
  KKY18106.1 819 FQWPFLLRGVSFWTQNDtRQQIYFLGNPIGYWIASSLLAVFAGVIAADQ 867
                 57********98876651456667778**************97766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1028 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 6727.64
//
Query:       KKY18107.1  [L=376]
Description: hypothetical protein UCRPC4_g05144 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.33s 00:00:00.92 Elapsed: 00:00:00.52
# Mc/sec: 2185.49
//
Query:       KKY18108.1  [L=749]
Description: putative oligosaccharyl transferase subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.7e-142  474.7  36.2     7e-138  460.6  34.4    2.1  2  STT3      Oligosaccharyl transferase STT3 subunit
  ------ inclusion threshold ------
       0.19   11.6   0.0       0.41   10.6   0.0    1.4  1  DUF2498   Protein of unknown function (DUF2498)


Domain annotation for each model (and alignments):
>> STT3  Oligosaccharyl transferase STT3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  460.6  34.4  7.8e-142    7e-138       2     488 .]      22     505 ..      21     505 .. 0.94
   2 !   13.8   0.0   2.3e-06      0.02     448     485 ..     526     564 ..     513     566 .. 0.93

  Alignments for each domain:
  == domain 1  score: 460.6 bits;  conditional E-value: 7.8e-142
                 HHHHHHHHHCCCCCHCC.CCCCCCT--S--SSCHHHHHHHCCCHHHT-C.....CCHHSSEETTSSTTT-EEESTTCCHCCC.CHHHHHHCCHHC.... CS
        STT3   2 lilvifalialvavasrdlFtdedglsylsefDpYYnyRltenllnnGfpGdvvikkknwfdhsqyyPpGsrvdygplivlLamlasaiinhsld.... 96 
                 l ++i++ ia +av+sr lF++++++s+++efDp++n+R+t++l+++Gf     + +  wfd++++yP+G rv++g+l+++L m++s++i+h+l+    
  KKY18108.1  22 LRIIILVTIAAAAVSSR-LFSVIRFESIIHEFDPWFNFRATKYLVKHGF-----YSFWDWFDDRTWYPLG-RVTGGTLYPGL-MVTSGVIYHILRllti 112
                 67899************.*******************************.....****************.***********.**************** PP

                 .HHHHHHHHCCHHHHHHHHCHHHHHHHHHH.S-CCCHHHHHHHCCC-CCCCCTTSTT--STCCCCHHHHHHHHHHHHHHHHCCSTTCHHHHHHHHHHHH CS
        STT3  97 .vsirevclwlpallgsLlaIpiyflvrel.ksdiaGllAAlllaiaPgYlsrtvaGfyDtdmfeivlllfvlffflkaiktksnkislaviaaliifl 193
                  v+ir++c++l++ +++L+a  +y+l++e+ +s+ aGllAA++++i PgY+sr+vaG+yD+++++i+ll+f++++++ka+k++s  i++ ++aal++ +
  KKY18108.1 113 pVDIRNICVLLAPGFSGLTAFSMYLLTNEMsTSPSAGLLAAAFMGITPGYISRSVAGSYDNEAIAIFLLVFAFYLWIKAVKNGS--IMWGSLAALFYGY 209
                 ***************************776379***************************************************..************* PP

                 HHTTSCCGGHHHHCCHHHHHHHHHCTTTS-CCHHHHHHHHHHHHHHH..CCCCCCCTTCHHHSTTTCHHCCCCHHHHHHHHCCCHHC..CCCCCHHCCC CS
        STT3 194 ivlaWggyailiyallllfilalLiigrfelklkiavtfsviiaflviaiivllflgfqvvavseiigalgifgllqlvafgsvvvlvaelkfyqfisl 292
                 +v+aWggy ++i++l++l+ ++l+ +gr++++l+ia+t+++++++l+  +++++f+gf +v++s++++a+gifgl+qlv  +++ +   +l  +qf++l
  KKY18108.1 210 MVSAWGGY-VFITNLIPLHAFVLICMGRYTSRLYIAYTTWYALGTLA--SMQIPFVGFLPVRSSDHMAAMGIFGLIQLVGAVQFLRQ--QLPGKQFQTL 303
                 ********.**************************************..**************************************..********** PP

                 HHTT.HHHHTT--GGGHHHHHHHHHHHHCCCCCCTS-----TTHHHHHHHHHS---S--CCHHHCCSSSTTTTCCCHHHCHHCCHHCTCHHHHHHHHHH CS
        STT3 293 fqpgilsevlgligevvtalavlglialwlgilyslldleyaklkikiiilvsvwlpvgllaltkglrfliftvPlgiifvgllleflavfvkiysvsq 391
                 + +  +  v g++   + +l+v g+ia+w+g++ysl+d+ yak++i+ii++vs+++p+ + a++++l +li+++P+g++ ++  l++++vfv iy+v++
  KKY18108.1 304 LVGL-VLAVFGIAFLGLVLLTVSGVIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTAWPAFFFDLNLLIWLFPAGVYMCFRQLRDEHVFVVIYAVMA 401
                 *999.8888888899************************************************************************************ PP

                 HHHCCC-SCHCCCCCHHHHHHHCCCHHHHHHHHCCHHHHHHHHH.HHHHH...HHHHCT.TTTTHHH....TTHHHCHHHHHHHHHHHHHHHHHHHHHH CS
        STT3 392 ilfsgvvvillmltllpvlallaavkiskifstykdekeakikv.aakav...aptksnglkeslew....kantnrdsvvitwwdyghilaveadrpV 482
                  +f+gv+v+ lmltl+p ++  aa+++s+i++ty  +k+       ++ +    +  +++  +s+ +    +++   +s v++ +  +++l+v + ++V
  KKY18108.1 402 SYFAGVMVR-LMLTLTPIVCAAAAMALSYILDTYLVAKSPTPPLsQNGTAdapTKQSKQESLRSMRNplvgIYSLVAKSAVTSLTIGYLLLFVLHCTWV 499
                 *********.************************9998876665333333533333333333444432224789999********************** PP

                 HHHCCS CS
        STT3 483 tfdggs 488
                 t++++s
  KKY18108.1 500 TSNAYS 505
                 ****98 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.3e-06
                 TTTTHHH.TTHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
        STT3 448 lkeslew.kantnrdsvvitwwdyghilaveadrpVtfd 485
                   e+ +w ++nt+ d+ +++wwdyg+ +  +adrp+++d
  KKY18108.1 526 YREAYYWlRQNTKPDAKIMSWWDYGYQIGGMADRPTLVD 564
                 57899********************************99 PP

>> DUF2498  Protein of unknown function (DUF2498)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.6e-05      0.41      26      64 ..     625     662 ..     622     670 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.6e-05
     DUF2498  26 eGmeatdveqkedvLvFkGeyfldeqglPtekttavFnm 64 
                 eG+  ++v+++ d    +Gey +de+  Pt k   ++ m
  KKY18108.1 625 EGIWPDEVKER-DFFTSRGEYRIDEEATPTMKNSLMYKM 662
                 67778888876.67899***************9998888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.48
# Mc/sec: 4718.16
//
Query:       KKY18109.1  [L=92]
Description: putative atpase f0 complex subunit e mitochondrial [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-26   92.6   0.5    1.6e-26   92.5   0.5    1.0  1  ATP-synt_E  ATP synthase E chain


Domain annotation for each model (and alignments):
>> ATP-synt_E  ATP synthase E chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.5   8.7e-31   1.6e-26       2      95 ..       2      91 ..       1      92 [] 0.91

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 8.7e-31
  ATP-synt_E  2 spvavsPlinvlRysaLalGvvyGakrqrslkseekkeekereleaqekliekakaayakkkqakseakslaegssakiddedp....dilvavesak 95
                s+   s  +nvlR+saLa+Gv+yG+++q++++++ k+ee++r+++++e+li+kak++y kk ++++     a++  +++d+e+p    +++ ++++ak
  KKY18109.1  2 ST---SQGVNVLRWSALAVGVFYGFYHQSNITAKGKAEEAQRQYHHKESLIKKAKEEYLKKTNPQQ-----AQAGGVISDPENPnfdlEAFLKAQEAK 91
                55...889**********************************************************.....666677899999988888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1096  (0.06113); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 665.52
//
Query:       KKY18110.1  [L=587]
Description: putative cytoplasmic dynein intermediate chain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-05   23.2   8.8       0.63   11.0   0.0    5.3  5  WD40        WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.021   14.7   0.7      0.056   13.4   0.7    1.7  1  Dynein_IC2  Cytoplasmic dynein 1 intermediate chain 2
       0.35   11.3   1.9       0.32   11.4   0.2    1.7  2  PBP1_TM     Transmembrane domain of transglycosylase PBP1 at 


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.1   6.4e+03      12      25 ..     191     205 ..     182     213 .. 0.71
   2 !   11.0   0.0   0.00011      0.63       3      38 .]     235     271 ..     233     271 .. 0.88
   3 !    7.0   1.2    0.0019        12       9      38 .]     293     325 ..     285     325 .. 0.80
   4 ?    4.4   0.7     0.013        79      12      37 ..     407     431 ..     390     432 .. 0.58
   5 ?   -0.6   0.0      0.48   2.9e+03      21      38 .]     538     555 ..     527     555 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.1
                 S.EEEEEEETTSSEE CS
        WD40  12 s.vtslafspdgawl 25 
                   +++l+fsp  + l
  KKY18110.1 191 RqISDLQFSPQYQEL 205
                 269999999988765 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00011
                 EEEEEESSSSEEEEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40   3 clrtltGHssvtslafspdgawlasG.sdDgtvriWd 38 
                 + +t+t+ s+v s +fsp ++ l+ G s+ g v +Wd
  KKY18110.1 235 PEYTFTATSDVLSARFSPFHPQLVIGgSYSGQVLLWD 271
                 5678999999************9977579*******9 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0019
                 SS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtsla..fspdgawlasGsdDgtvriWd 38 
                 GH  +v+s++    p+ + +++ s Dg v  W+
  KKY18110.1 293 GHtHPVYSISiiGTPNAHNIITTSTDGVVCSWS 325
                 7844699999999999999888888****9995 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.013
                 S.....EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  12 s.....vtslafspdgawlasGsdDgtvriW 37 
                 +     v +l     +++++s+s D ++++W
  KKY18110.1 407 HpargpV-DL-----SDLMLSSSIDWSLKLW 431
                 1223333.33.....4448899********* PP

  == domain 5  score: -0.6 bits;  conditional E-value: 0.48
                 TSSEEEEEETTSEEEEEE CS
        WD40  21 dgawlasGsdDgtvriWd 38 
                 +g+ +a G+ Dg v ++d
  KKY18110.1 538 EGKKIAVGGLDGVVTVFD 555
                 4555899*99***99887 PP

>> Dynein_IC2  Cytoplasmic dynein 1 intermediate chain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.7   9.3e-06     0.056      19      30 ..      28      39 ..      16      40 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.3e-06
  Dynein_IC2 19 KEtVtYsKeTQT 30
                KE+VtYsK  QT
  KKY18110.1 28 KEVVTYSKAVQT 39
                7*********** PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.4   8.4e+03      17      32 ..      65      80 ..      56      92 .. 0.56
   2 ?   11.4   0.2   5.3e-05      0.32      22      63 ..     131     174 ..     127     183 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.4
     PBP1_TM 17 kakparkkasrrrrrd 32
                ka+ +r++a r++ r 
  KKY18110.1 65 KAQRERDEAIRESLRK 80
                3344455555555443 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 5.3e-05
     PBP1_TM  22 rkkasrrrrrdddydd..eyddeedDdddddeeeevprkgkkkk 63 
                 r+ +  +r  dd+yd   +y  ++ D d+dd++++ +r ++k+ 
  KKY18110.1 131 RSSKVIERALDDEYDIlaDYTLSKLDADNDDDDSPYARTSRKAL 174
                 6666778899*****88899999************999877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.50
# Mc/sec: 3555.42
//
Query:       KKY18111.1  [L=211]
Description: putative 4-carboxymuconolactone decarboxylase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-05   23.5   0.0    0.00017   21.6   0.0    1.8  2  CMD       Carboxymuconolactone decarboxylase family


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   9.2e-09   0.00017       1      56 [.      46     100 ..      46     108 .. 0.93
   2 ?   -1.3   0.0      0.13   2.4e+03      57      78 ..     169     190 ..     164     196 .. 0.64

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 9.2e-09
                 HHHHHHHHHHHHHHCCGSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-- CS
         CMD   1 pellraltalreallareggLdpkereLialavsaangceyCvdaHtraAleaGvt 56 
                 p +++ ++a+ +al   +   ++ + eL++ +++++n  +y++d H+++A++ G  
  KKY18111.1  46 PPVADGYNAFVGALRT-KTIFPASLLELAICRIAVLNSAVYEWDIHAAIAVKEGIP 100
                 77899999999***99.999********************************9975 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHSHHHHHH CS
         CMD  57 eeeiaevlaqaaayagwpaara 78 
                 e ei e+ +  a y  + +++ 
  KKY18111.1 169 EREIVELTTTIAGYNCVSRILV 190
                 5566666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 1328.30
//
Query:       KKY18112.1  [L=307]
Description: putative catecholdioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-48  162.3   0.0    1.1e-47  161.9   0.0    1.1  1  Dioxygenase_C    Dioxygenase
    4.4e-27   93.7   0.1    7.2e-27   93.1   0.1    1.3  1  Dioxygenase_N    Catechol dioxygenase N terminus
    0.00014   22.1   0.8      0.011   15.9   0.4    2.7  2  CarboxypepD_reg  Carboxypeptidase regulatory-like domain


Domain annotation for each model (and alignments):
>> Dioxygenase_C  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.9   0.0   1.8e-51   1.1e-47       1     181 [.     114     292 ..     114     293 .. 0.95

  Alignments for each domain:
  == domain 1  score: 161.9 bits;  conditional E-value: 1.8e-51
                    ---S--EET--EEESEEE---S--TT--EEEEEEEEE-T.TSSB-TT-EEEEE---TTS--TTS-TTS-SSTTTTEEEEE--TTSEEEEEEE---- CS
  Dioxygenase_C   1 iegPlyveeapededlarledkgeeegerlvlsGrvlde.aGkplagalvelWhanaeGrYshkkeeheapelnlrgriltdeeGryrirtikPap 95 
                    i gP+++ +ap  +   +  + ++++g+  +++G+v+d   Gkp+++a v++W+a a+G Y+ +++e  +++ nlrg++ tde+G+y+    +P++
     KKY18112.1 114 ILGPFWSPHAPFRNLGDSIIQDPTPNGQITLMHGTVTDVvTGKPIVNAIVDIWQASANGKYDFQDDE--QSDNNLRGKFRTDENGNYHYYCYHPTA 207
                    57999999999988888887878***************648************************99..9************************** PP

                    EE--TTSHHHHHHHHTT---EE-SEEEEEEE-TTB--EEEEEEETT-TTTTS-TT----TTTEE--EEE-SHS-.EEEEE--EE-- CS
  Dioxygenase_C  96 YpipndGptgklldalgrhawRPaHiHfsvsapghrklvTqlyfegdkyladdivsaakeeLiaeleesedeeekalelefdlvLd 181
                    Y +p+dGp+g ll+ l+rh++RPaHiH++vsa+g++ ++Tqly + d+y+a+d v+a+k++L+++++ s+d  + +l+le+++ L+
     KKY18112.1 208 YSLPTDGPAGVLLKLLDRHPMRPAHIHLMVSAEGYKPVTTQLYPRDDPYVATDTVFAVKDDLLLDFKPSTDP-KAKLDLEYNVTLA 292
                    ***********************************************************************9.6699*****9996 PP

>> Dioxygenase_N  Catechol dioxygenase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   0.1   1.2e-30   7.2e-27       2      69 ..      33     100 ..      32     104 .. 0.97

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 1.2e-30
                    HHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH.....TT-HHHHHHHTTHHHHHHHHHHH CS
  Dioxygenase_N   2 pRlkeiverlvrhlhdfirevdlteeEwwaavdfLtrvGqisddkrqEfiLlsdvLGlehlvdainda 69 
                    +R++ ++++l++hlhdf+re++lt+eEw+ +v+f++++Gqisd+kr+E + ++dvLG+e+lvd+++++
     KKY18112.1  33 DRARFVMSSLIQHLHDFVRETELTPEEWMMGVQFVNSIGQISDSKRNEGQRICDVLGIESLVDEVANK 100
                    599**************************************************************986 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.4   1.9e-06     0.011       3      52 ..     146     210 ..     145     214 .. 0.83
   2 ?    3.4   0.0     0.016        93      47      65 ..     230     248 ..     226     263 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.9e-06
  CarboxypepD_reg   3 sGrVtda.sgapiagatVtvtnadtg..............tvastttdadGafrlrglppgtysv 52 
                      +G+Vtd  +g+pi +a V + +a+ +               +   +td++G++   +  p+ ys+
       KKY18112.1 146 HGTVTDVvTGKPIVNAIVDIWQASANgkydfqddeqsdnnLRGKFRTDENGNYHYYCYHPTAYSL 210
                      7*****77***********9876544477777777777767999*********988888888876 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.016
  CarboxypepD_reg  47 pgtysvtvsapGyatatre 65 
                      p  + + vsa+Gy+++t +
       KKY18112.1 230 PAHIHLMVSAEGYKPVTTQ 248
                      667889**********964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1899.15
//
Query:       KKY18113.1  [L=360]
Description: putative carboxy-muconate cyclase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-19   69.6   0.0    3.8e-19   69.1   0.0    1.3  1  Lactonase  Lactonase, 7-bladed beta-propeller
  ------ inclusion threshold ------
      0.016   14.8   0.0        1.7    8.1   0.1    2.9  3  SGL        SMP-30/Gluconolactonase/LRE-like region
       0.16   12.1   0.0       0.46   10.7   0.0    1.7  1  DUF1244    Protein of unknown function (DUF1244)


Domain annotation for each model (and alignments):
>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   6.4e-23   3.8e-19       2     281 ..       5     291 ..       4     336 .. 0.80

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 6.4e-23
                 EEEEEGGSSS.TEEEEEEEETTTS-EEEEEE.EEESS--.-SEEE-TTSSEEEEEET.STTTEEEEEEEETTTTEEEEEEEEE.SSS-EEEEEE-TTSS CS
   Lactonase   2 lyvGtytkgeskgiytlkldtetgkltplel.vaelenP.syLalspdgktlYavnetgeeggvsafaidkdsgeltllnkvssegaspchlsvdedgk 98 
                 l++Gt t    ++i t+++d+e + l+ ++  ++  ++P s+++++ ++k +Y ++ +    + s+ a+++  gelt   + +  g++p   s d + +
  KKY18113.1   5 LMIGTWTP--PGAIFTVEFDDEAYTLKLVKRtAIPEDEPiSWMTFDHARKNIYGASMK----KWSSHAVKAP-GELTHEVSHP-MGGHPLAPSADTKTR 95 
                 78999996..9*******************97667777769************99775....5555555554.5665544444.555555555555555 PP

                 EEEEEETT..............TTEEEEEEB.TTSEBESECEEEE.....SSTTT-SSTTEEEEEE-TTSSEEEEEETTTTEEEEEEE.-TTS-EEEEE CS
   Lactonase  99 llavAnYs..............ggsvsvfpldadgslkeasqvlkhegsgpnperqesphaHsvvldpdgkfllvpDLGtDrvrvykldkatgkltepa 183
                  ++v   +              +g  +vf++d++g+l++  q ++           +++ +H +v+dp++ +l++ D  +D++ + k d ++ klt + 
  KKY18113.1  96 AIFVLAAKkppycvygnpfydyAGYGNVFSVDKNGKLDQNIQNYE---------YCDKSAIHGMVFDPSETYLYSADMWADKIWTHKKDSEG-KLTLVG 184
                 5444222223333555666678999999********999988774.........57899*****************************8887.7***** PP

                 EE.E-STT--EEEEEE-TTSSEEEEEETTTTEEEEEEEE-TTT..EEEEEEEEESS-TSS-S--..-EEEEE.E-TTSSEEEEEETS.....STEEEEE CS
   Lactonase 184 sv.klppgsGPRHlaFhpdgkiaYvvnELsstvsvfsydeatg..aleelqtvstlpegftgkn..saaeIr.lspdgkflyvSnRg.....adsiavf 271
                 s+ + ++g+ PR +  hp+g+++Yv+ E  +++ v+ +de+t    ++++ t++ +p+g+++ +    ++++  s++g +l++  R+     +  i+ +
  KKY18113.1 185 SIdAPTAGDHPRWVEIHPSGHYLYVLMEAGNRLGVYVIDEETHmpVFTHI-TYPLVPPGVRDMKkmYRSDVVfCSQSGDYLFATARSnshsvTGYISAY 282
                 **56679********************************88886555655.6788888655553236777652799***********988888889999 PP

                 EE-TTT--EE CS
   Lactonase 272 avdeadgtlt 281
                 ++ ++ g+++
  KKY18113.1 283 KLGPQ-GQVE 291
                 98555.6665 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.022   1.3e+02     153     231 ..      11      89 ..       2     103 .. 0.73
   2 ?    8.1   0.1   0.00029       1.7     115     168 ..     121     179 ..     110     195 .. 0.74
   3 ?    0.8   0.0     0.049   2.9e+02      57     130 ..     214     294 ..     200     304 .. 0.66

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.022
         SGL 153 sltrkiwaydvdaeggklsnrrvfadlkkgegepDGlavDa.eGnvwvAvwgggkvvrfdpdGklieeiklpak.rvtsca 231
                 ++ + i+ +++d+e  +l+  +  a  ++++  +  ++ D   +n++ A ++++  + ++  G+l++e++ p+  ++ ++ 
  KKY18113.1  11 TPPGAIFTVEFDDEAYTLKLVKRTAIPEDEP--ISWMTFDHaRKNIYGASMKKWSSHAVKAPGELTHEVSHPMGgHPLAPS 89 
                 6677777777777777777777666666665..55688898899**************************99655776665 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00029
         SGL 115 galyrldpdgklervlddlt.....ipNGlawspdgktlYlaDsltrkiwaydvdaegg 168
                 g+++ +d++gkl + +++          G+ ++p ++ lY aD +++kiw  + d+eg+
  KKY18113.1 121 GNVFSVDKNGKLDQNIQNYEycdksAIHGMVFDPSETYLYSADMWADKIWTHKKDSEGK 179
                 77777777777666555543111113469*********************999988776 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.049
         SGL  57 asksglalldlasgeletladeee........dekpllrfNDgvvdpdGrlwfGtmgdeeakgeevgalyrldpdgklervl 130
                 +++ g++++d ++  + ++++ +         d k+  r+  + +++ G + f t + ++++ + + + y+l p+g++er++
  KKY18113.1 214 GNRLGVYVIDEET-HMPVFTHITYplvppgvrDMKKMYRSDVVFCSQSGDYLFATARSNSHSVTGYISAYKLGPQGQVERQI 294
                 5566666665333.22222222112223345466556666666688889988888888888887678889999999998876 PP

>> DUF1244  Protein of unknown function (DUF1244)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.8e-05      0.46      32      52 ..      45      65 ..      34      76 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.8e-05
                --HHHHHHHHHSS-HHHHCHC CS
     DUF1244 32 lskdearelvYgmpyeeWkak 52
                ++ d+ar+ +Yg ++++W ++
  KKY18113.1 45 MTFDHARKNIYGASMKKWSSH 65
                7889**************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 2297.38
//
Query:       KKY18114.1  [L=557]
Description: putative alpha beta hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-09   36.5   0.0    1.3e-08   35.7   0.0    1.4  1  Abhydrolase_6  Alpha/beta hydrolase family
      3e-08   33.6   0.0    1.2e-07   31.6   0.0    1.9  1  Abhydrolase_1  alpha/beta hydrolase fold
     0.0052   16.5   0.1     0.0091   15.7   0.1    1.3  1  Esterase       Putative esterase
  ------ inclusion threshold ------
      0.024   13.9   0.0      0.049   12.9   0.0    1.5  2  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   2.9e-12   1.3e-08      13     219 ..     295     547 ..     283     548 .. 0.51

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 2.9e-12
                    .G..CHHHHHHHHCCT.CEEEEE--TTS....TS-GGCS--HHHCHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC.......EE.EEES- CS
  Abhydrolase_6  13 sW..lvapLaallaag.vhvlapDlpGh....GrsdpppldledladlaalldelaagggpvvlvGHSlGGalalaaapla.....lvvg.vlldp 95 
                    +W  + +++   ++ + ++vl +  +G     G ++p   +l    d+ +ll+ l+  + +++l+G SlGGa ala    a     ++ + +  d+
     KKY18114.1 295 IWdsFISHFFSHAPNRkYRVLRYLSRGRssntGATTPVTVNLLS-SDIIHLLNTLR-IPTAACLIGVSLGGATALA---TAlthpsRIQSfISCDT 385
                    46433566666666677888999999995444533444444433.88899999996.55555*********98888...44434456666566666 PP

                    ........----TTT.................S----TTHHHHHHTT-C....CCCHCCH...S-HSCCCCHHH.CCCCHCHCCCGHH........ CS
  Abhydrolase_6  96 ......pptalpagl.................laaalelllallallrl....lawlsre...plprlfladed.adaawrarlarla........ 152
                                  +                 ++ + ++ ++ +++ +           e   +  r+++a+++ +d+a +  +ar+         
     KKY18114.1 386 sakspaG-------NseawgsriavaekqgstANLISPFGDQSPSAPAEpivgT-----ElaeMTVRRWFAPTSyEDPALTSEFARVKhmvttnsl 469
                    4443220.......1222233333333333322222222222222222222211.....1222344466666662123333333333311122222 PP

                    .HHCCHHCHTTCCHHTT-TTGC.....EEECTT-CHHHHCHHCCCH......STTEEET.CE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 153 .allaglgllpaaawadlpvpl.....lvlggeDplvprllerlla......qagarlp.vvlpgaGHlphleepdevae 219
                      + +g+++l   ++++l++ +     +++g++D ++p  +e+l        + ++  + +++ +aGHlp+ e+p  va+
     KKY18114.1 470 pGFKKGVEALFDYDYKPLLPGYtgkgaFLVGAKDGVLPKAMEALSKelgtsnSVKV--GfQIVDDAGHLPMCEKPGVVAD 547
                    13333333333445555555557778855599999888555544444434444444..36*********99999999886 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   2.7e-11   1.2e-07      12     252 ..     295     537 ..     281     542 .. 0.64

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 2.7e-11
                    CGGGGTTGHHHHHHHHT....TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEE.EEEETHHHHHHHHHHHHHGGGEEEEE CS
  Abhydrolase_1  12 ssdvwaerglapaLakd....gfdvillDlrGvgySspapacinddygtasvaddldrildalgddklt.lvGhSmGGmialayaaeyperVkalv 102
                     +d+++      ++  +    +++v+ + +rG  + + a ++  ++ ++  +  d+  +l+ l +   + l+G S+GG++ala a+ +p+r+++++
     KKY18114.1 295 IWDSFIS-----HFFSHapnrKYRVLRYLSRGRSSNTGATTP--VTVNL--LSSDIIHLLNTLRIPTAAcLIGVSLGGATALATALTHPSRIQSFI 381
                    3444444.....333333333999999999999999999998..66777..89999999************************************* PP

                    EESE.CSSCCHHHHHHHHHHH..HHHCHHCHHHHHHH....HHHHHHHHHCCSCHHHHHHHHHHHHHH...HCHHHCCHHHHHHHCHHHHHHHHHH CS
  Abhydrolase_1 103 llga.idpaaslieaqrqqak..sfpdffdgyaadca....rnpagplladelaaleqrhrlvdalkf...pdkskrfpssgsdnasslatgalks 188
                    ++++   ++a  +ea+   ++    ++   + + ++       pa p+++ ela  ++r  +     +   p  ++ f + + +  +++  g +k 
     KKY18114.1 382 SCDTsAKSPAGNSEAWGSRIAvaEKQGSTANLISPFGdqspSAPAEPIVGTELAEMTVRRWFAPT--SyedPALTSEFARVKHMVTTNSLPGFKKG 475
                    ****7555666666655443300333333333333321111234444555555555444332222..13357777777777777777777777777 PP

                    HHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHC.HTS...EEEEEEETCSSSH CS
  Abhydrolase_1 189 ieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaql.lpk...krlvvisdagHla 252
                    +e   ++d+ +ll  + +      +  ++ g++D++ p  +   +++l +++   +   +++dagHl 
     KKY18114.1 476 VEALFDYDYKPLLPGYTG------KGAFLVGAKDGVLPKAMEALSKELgTSNsvkVGFQIVDDAGHLP 537
                    777777777777777777......66666677777777555555555563334556667777777765 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1     2e-06    0.0091     117     145 ..     354     382 ..     341     417 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2e-06
                 EEEEEETHHHHHHHHHHHCSTTTCCEEEE CS
    Esterase 117 ravaGqSmGGlgALilalkhpdrFgsvss 145
                   ++G S+GG +AL +al+hp r +s +s
  KKY18114.1 354 ACLIGVSLGGATALATALTHPSRIQSFIS 382
                 6799*****************98766544 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.1e-05     0.049      58     113 ..     337     389 ..     299     429 .. 0.76
   2 ?   -3.6   0.0       1.2   5.2e+03     196     237 ..     497     540 ..     496     541 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.1e-05
  Hydrolase_4  58 yvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalki 113
                  +  D+  ++++++     +   l+G S+GG++al+ +l++p++++ +i + +  k 
   KKY18114.1 337 LSSDIIHLLNTLR---IPTAACLIGVSLGGATALATALTHPSRIQSFISCDTSAKS 389
                  5556666655555...3345789***********************9988666555 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.2
  Hydrolase_4 196 llhGeaDkvvdpeasrelyerlgsk...dktlklypglyHellnE 237
                  +l G++D v +++  ++l ++lg +   ++ +++ + + H  + E
   KKY18114.1 497 FLVGAKDGVLPKA-MEALSKELGTSnsvKVGFQIVDDAGHLPMCE 540
                  5789999998854.4455555554433367788888888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 3413.09
//
Query:       KKY18115.1  [L=1350]
Description: putative abc multidrug transporter mdr1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-99  333.3  37.8    6.4e-51  173.6   9.7    2.2  2  ABC_membrane  ABC transporter transmembrane region
    1.3e-66  223.3   0.0    3.6e-33  115.0   0.0    2.6  2  ABC_tran      ABC transporter
    4.9e-13   49.0   0.0    0.00037   20.0   0.0    3.5  3  SMC_N         RecF/RecN/SMC N terminal domain
    1.9e-06   27.5   1.5      0.005   16.6   0.3    2.7  2  AAA_29        P-loop containing region of AAA domain
    2.4e-05   23.3   2.3      0.064   12.0   0.0    2.9  3  ABC_ATPase    Predicted ATPase of the ABC class
    2.5e-05   24.7   4.4       0.15   12.4   0.4    3.4  2  AAA_16        AAA ATPase domain
    3.5e-05   23.4   0.4      0.045   13.3   0.0    2.9  2  AAA_25        AAA domain
    7.7e-05   22.7   0.0       0.32   10.9   0.0    2.5  2  RsgA_GTPase   RsgA GTPase
    0.00011   22.5   1.3       0.13   12.5   0.0    3.5  2  AAA_22        AAA domain
    0.00011   22.1   0.2       0.49   10.1   0.0    2.8  3  AAA_15        AAA ATPase domain
    0.00019   21.2   1.2        0.7    9.6   0.1    3.7  4  AAA_30        AAA domain
    0.00079   18.8   0.0        1.4    8.2   0.0    2.8  2  Zeta_toxin    Zeta toxin
     0.0011   18.8   2.2        1.7    8.3   0.0    3.7  4  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0019   17.4   0.0        1.7    7.7   0.0    2.4  2  G-alpha       G-protein alpha subunit
     0.0027   18.0   1.0       0.45   10.8   0.0    3.2  3  AAA_28        AAA domain
     0.0028   17.8   0.2        4.4    7.3   0.1    2.8  2  DUF87         Helicase HerA, central domain
      0.008   15.7   0.0        4.3    6.8   0.0    2.6  2  AAA_7         P-loop containing dynein motor region
     0.0082   16.4   2.9          4    7.8   0.3    3.7  2  SbcCD_C       Putative exonuclease SbcCD, C subunit
     0.0087   16.6   0.0        5.1    7.6   0.0    2.8  2  AAA_18        AAA domain
  ------ inclusion threshold ------
      0.013   15.7   0.0          9    6.5   0.0    2.7  2  AAA_33        AAA domain
      0.017   14.8   0.1        1.8    8.1   0.0    2.7  2  SRP54         SRP54-type protein, GTPase domain
       0.02   14.9   0.2         11    6.1   0.0    2.9  2  AAA_5         AAA domain (dynein-related subfamily)
       0.05   12.8   0.0        4.8    6.3   0.0    2.5  2  DUF815        Protein of unknown function (DUF815)
      0.055   13.2   0.0        3.2    7.4   0.0    2.5  2  PRK           Phosphoribulokinase / Uridine kinase family
       0.06   13.4   0.0        2.5    8.2   0.0    3.1  2  AAA_14        AAA domain
      0.084   12.8   0.1        1.4    8.8   0.1    2.6  2  APS_kinase    Adenylylsulphate kinase
      0.099   12.4   0.1        5.7    6.6   0.0    2.4  2  AAA_24        AAA domain
       0.11   12.4   0.1       0.52   10.2   0.0    2.0  2  Rad17         Rad17 P-loop domain
       0.13   12.7   0.1         15    6.0   0.0    3.3  3  RNA_helicase  RNA helicase
        2.3    8.7   5.6        7.5    7.0   0.5    2.8  2  AAA_23        AAA domain


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.6  20.1     3e-51   1.8e-48       1     273 [.     115     391 ..     115     392 .. 0.96
   2 !  173.6   9.7   1.1e-53   6.4e-51       1     273 [.     778    1053 ..     778    1054 .. 0.98

  Alignments for each domain:
  == domain 1  score: 165.6 bits;  conditional E-value: 3e-51
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS....TCCHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTH CS
  ABC_membrane   1 liliillailagvlsplfplvlgrildtlldk....gdpet....ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpm 89 
                   l+l+ l++i++g+l pl+ +++g++   +++        +     +++ ++ l++++l++++ +++++++  +++tge+   ++r +++ +ilrq++
    KKY18115.1 115 LFLSALSSIISGALLPLMTVIFGQLSGQFTGLflgtV--DPshfeHQVEKFTLYFVYLAIGEYAFTYISTLGFIYTGEHNAAKIREQYLAAILRQNI 209
                   68999*******************9999999877433..3356999*************************************************** PP

                   HHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  90 sffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEs 186
                   ++fd+  +Ge+++r+t d++ ++dgl++k+ l +++++tf+++++++f++ wkltl++ ++++ i+lv+   + ++ +++kk  +a+a  ++v+eE+
    KKY18115.1 210 AYFDRLGSGEITTRITADTNLVQDGLSQKVCLTLTAVATFIAAFVIGFVTFWKLTLICSSTVVAIVLVMGSGSFFIVTYSKKSLQAYASGGTVVEEV 306
                   ************************************************************************************************* PP

                   HHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHH CS
  ABC_membrane 187 lsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfga 273
                   +s ir   afg +++  +++++ le a+  g k  ++ g+++g ++++++l y la+w+G+ +v +ge ++ +  v++ ++a+++ga
    KKY18115.1 307 FSSIRNAVAFGTQDRLARQYDEFLEVAQLFGTKQKTVLGFMFGSMMCIVFLNYGLAFWMGSRFVVDGETNLAN--VLTIILAVMIGA 391
                   *************************************************************************..888888888876 PP

  == domain 2  score: 173.6 bits;  conditional E-value: 1.1e-53
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHH CS
  ABC_membrane    1 liliillailagvlsplfplvlgrildtlldkgdpet...ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsff 92  
                    +i+++++++l+g+  p + +++++ + ++++ +++ +   +++n+++l++l+lgl+q+++  ++  +++v++erl++r r ++f+ ++rq++sff
    KKY18115.1  778 MIVGLIFSALSGGGHPTQGILFSKTIVSMSKPASQYSelrSEVNFWCLMYLMLGLVQLLTLAISHGIFSVCSERLIRRARDRAFRTLMRQDVSFF 872 
                    6899*************************997777779999****************************************************** PP

                    HH..SCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane   93 dt..nsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeE 185 
                    d+  ns+G l+s l++++ +l ++ +++lg+++ sl+t+++ +i+++ +gwkl+lv++++lp+++ + +++  i+ +++++++k+++ + ++a E
    KKY18115.1  873 DKdeNSTGALTSFLSTETTSLANISASTLGTILSSLTTLLACCIISLAIGWKLALVCISTLPVLLGCGFIRFWIIARFENTQKKNYEGSAAYACE 967 
                    *********************************************************************************************** PP

                    HHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHH CS
  ABC_membrane  186 slsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfga 273 
                      ++irtV +++re  + ++++  l    ++++ +   ++ l +++q+l+ll+ al +w+G++lv +ge+++ +  +f+++  ++fga
    KKY18115.1  968 NTNAIRTVASLTRELDVWDNYHGLLVVQGRNSLISFAKSSHLYAASQSLILLCSALGFWYGGQLVGRGEYTLFQ--FFVCFTEVIFGA 1053
                    **************************************************************************..*****9999986 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.0   4.2e-33   2.5e-30       2     137 .]     460     617 ..     459     617 .. 0.90
   2 !  115.0   0.0     6e-36   3.6e-33       1     137 []    1121    1274 ..    1121    1274 .. 0.95

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 4.2e-33
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................esdee 84 
                 + v+l + +g+++a+vG +G+GKSt++ l+ + ++p  G+++ldg+d+ + +l++lr++++ ++qep lf e+ +++n                +++e+
  KKY18115.1 460 DGVDLFIPAGKTTALVGASGSGKSTIVGLVERFYNPVGGQVTLDGHDIATLNLRWLRQQVALVQQEPVLFGET-IYNNikhgligsrfehepeeKQRER 557
                 679999******************************************************************9.99999************99855555 PP

                 HHHHHHHSTTGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 i++a++k + ++         +t v++++  LSgGqkqr+a+ ra++++pk+lllDE+t+
  KKY18115.1 558 IYDAAKKANAHDfitslpeGYNTDVGERGFLLSGGQKQRIAISRAIVSDPKILLLDEATS 617
                 66666666666655555555588889999*****************************96 PP

  == domain 2  score: 115.0 bits;  conditional E-value: 6e-36
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................. 79  
                  l+ ++l++++g+ +a+vG +G+GKSt ++ll + ++p +G+il+d++d++  +l+ +r++i+ ++qep+l +++ +r+n                  
  KKY18115.1 1121 LRGLNLTVRPGQYIALVGASGCGKSTTIALLERFYDPLAGSILVDNEDISALNLNDYRSHIALVSQEPTLYQGS-IRDNillglanhaddvpdslie 1216
                  5789**********************************************************************.***********99999988887 PP

                  ..HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   80 ..esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                     +d++i++++ +l       t+v+s++s LSgGqkqr+a+arall++pk+lllDE+t+
  KKY18115.1 1217 kaCRDANIYDFIMSLPEGF--STIVGSKGSLLSGGQKQRIAIARALLRDPKILLLDEATS 1274
                  6666666999999999888..9************************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.3     0.021        12      25      41 ..     470     486 ..     462     493 .. 0.88
   2 !   19.0   0.1   1.3e-06   0.00075     136     213 ..     588     661 ..     498     667 .. 0.78
   3 !   20.0   0.0   6.3e-07   0.00037      93     209 ..     727    1314 ..     705    1322 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.021
                 SEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnll 41 
                 + ta+vG+ GSGKs ++
  KKY18115.1 470 KTTALVGASGSGKSTIV 486
                 589***********997 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1.3e-06
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvtk 213
                 lLSgG+k+ +a++   Ai  v+   + llDe  +aLD k    v   l+++ +    ivi++r  ++++a+++v +++
  KKY18115.1 588 LLSGGQKQRIAISR--AI--VSDPKILLLDEATSALDTKSEGVVQAALDAAAQGRTTIVIAHRLSTIKHAHNIVVMQQ 661
                 79*****9887764..34..44556889******************************************99987665 PP

  == domain 3  score: 20.0 bits;  conditional E-value: 6.3e-07
                  SSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT...................................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................................... RF
       SMC_N   93 ekeevsisrrvkrkgeseykingkevtkkevsellesagiske...................................................... 135 
                  e+e++ + r+  +k  s++ + +k+   k+  +ll   g+  +                                                      
  KKY18115.1  727 EDEKLRLGRTNTSKSVSSMVLSKKQSGAKNQYSLLYLIGFIAKfnqkemflmivglifsalsggghptqgilfsktivsmskpasqyselrsevnfw 823 
                  4566777788777777888888777777777777777777777788888888888888888888888888888888888888888888888888888 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY18115.1  824 clmylmlglvqlltlaishgifsvcserlirrardrafrtlmrqdvsffdkdenstgaltsflstettslanisastlgtilsslttllacciisla 920 
                  8888888888888888888888888888888888888888888888888888888888888888888888899999999999999999999999999 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY18115.1  921 igwklalvcistlpvllgcgfirfwiiarfentqkknyegsaayacentnairtvasltreldvwdnyhgllvvqgrnslisfaksshlyaasqsli 1017
                  9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY18115.1 1018 llcsalgfwyggqlvgrgeytlfqffvcftevifgaqsagtvfsfagdmgkarnaaaalaalfdhqpaidtwstdgrkietvtgeiefrdvhfrypt 1114
                  9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY18115.1 1115 rpeqpvlrglnltvrpgqyialvgasgcgksttiallerfydplagsilvdnedisalnlndyrshialvsqeptlyqgsirdnillglanhaddvp 1211
                  9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                  .................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSH CS
                  .................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 .................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislre 199 
                                                   lLSgG+k+ +a+a        +   + llDe  +aLD +  k v   l+++ k    + +++r 
  KKY18115.1 1212 dsliekacrdaniydfimslpegfstivgskgsLLSGGQKQRIAIARA----LLRDPKILLLDEATSALDSESEKVVQAALDAAAKGRTTVAVAHRL 1304
                  999999999999999999999999999999999********9888754....355666899************************************ PP

                  HHCCC-SCEE CS
                  xxxxxxxxxx RF
       SMC_N  200 emlekadklv 209 
                   +++kad ++
  KKY18115.1 1305 STIQKADVIY 1314
                  ******9987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.3   8.4e-06     0.005      19      39 ..     466     486 ..     457     489 .. 0.80
   2 !    9.0   0.0    0.0019       1.1      18      39 ..    1127    1148 ..    1121    1152 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 8.4e-06
      AAA_29  19 idlkg.atlltGpsGsGKSTll 39 
                 i  +g +t l+G+sGsGKST++
  KKY18115.1 466 IP-AGkTTALVGASGSGKSTIV 486
                 43.5669*************97 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0019
      AAA_29   18 eidlkgatlltGpsGsGKSTll 39  
                  ++++ + + l+G+sG GKST +
  KKY18115.1 1127 TVRPGQYIALVGASGCGKSTTI 1148
                  556566899***********87 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       2.6   1.5e+03     242     262 ..     466     487 ..     462     498 .. 0.81
   2 !    9.9   0.1   0.00049      0.29     298     353 ..     563     619 ..     560     659 .. 0.90
   3 !   12.0   0.0   0.00011     0.064     298     352 ..    1220    1275 ..    1216    1284 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.6
                 E-SS.EEEEEE-TTSSHHHHHH CS
  ABC_ATPase 242 ipkG.vtlIvGggfhGKsTLLe 262
                 ip G  t++vG    GKsT++ 
  KKY18115.1 466 IPAGkTTALVGASGSGKSTIVG 487
                 88898999***********875 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00049
                 EEE--TTTB---CCC--ST.TEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-H CS
  ABC_ATPase 298 kgvDispFinnLPegkdtt.kfstedASGStsqAanimealeagakllLiDEDtsAt 353
                 k+++   Fi++LPeg +t         SG   q  +i +a+  + k+lL+DE tsA 
  KKY18115.1 563 KKANAHDFITSLPEGYNTDvGERGFLLSGGQKQRIAISRAIVSDPKILLLDEATSAL 619
                 5678899**********9944445568****************************95 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00011
                  EEE--TTTB---CCC--ST.TEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS- CS
  ABC_ATPase  298 kgvDispFinnLPegkdtt.kfstedASGStsqAanimealeagakllLiDEDtsA 352 
                  + ++i  Fi +LPeg +t   +  +  SG   q  +i++al ++ k+lL+DE tsA
  KKY18115.1 1220 RDANIYDFIMSLPEGFSTIvGSKGSLLSGGQKQRIAIARALLRDPKILLLDEATSA 1275
                  568999************944555668****************************9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.3   0.00034       0.2      25      61 ..     470     506 ..     463     659 .. 0.62
   2 !   12.4   0.4   0.00025      0.15      24      63 ..    1130    1169 ..    1120    1301 .. 0.42

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00034
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcd 61 
                   + l+G+sG+GKs++v  + r ++  gg ++    d
  KKY18115.1 470 KTTALVGASGSGKSTIVGLVERFYNPVGGQVTLDGHD 506
                 66889************88887766665555333333 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00025
      AAA_16   24 p.elvllsGesGvGKsslvrellr...alekdggiflrgkcdql 63  
                  p +++ l+G+sG+GKs+ +  l r   +l ++    +  ++++ 
  KKY18115.1 1130 PgQYIALVGASGCGKSTTIALLERfydPLAGS----ILVDNEDI 1169
                  33799************996665411144444....33333333 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   7.6e-05     0.045      26      50 ..     462     486 ..     442     488 .. 0.84
   2 !    7.0   0.0    0.0067         4      24      49 ..    1119    1147 ..    1101    1152 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.6e-05
      AAA_25  26 vkgllpagelallaGapgtGKttla 50 
                 v+ ++pag++++l+Ga+g+GK+t++
  KKY18115.1 462 VDLFIPAGKTTALVGASGSGKSTIV 486
                 3459*******************85 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0067
      AAA_25   24 wlvkg...llpagelallaGapgtGKttl 49  
                   +++g    ++ g  ++l+Ga+g+GK+t 
  KKY18115.1 1119 PVLRGlnlTVRPGQYIALVGASGCGKSTT 1147
                  344443333456999************96 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00054      0.32      98     117 ..     468     487 ..     422     496 .. 0.83
   2 !    8.9   0.0    0.0022       1.3      99     120 ..    1130    1152 ..    1092    1162 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00054
                  TTSEEEEECSTTSSHHHHHH CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLin 117
                  ++kt++lvG SG GKSt++ 
   KKY18115.1 468 AGKTTALVGASGSGKSTIVG 487
                  469**************985 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0022
                   T.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase   99 d.ktsvlvGqSGvGKStLinall 120 
                     + ++lvG SG GKSt i  l 
   KKY18115.1 1130 PgQYIALVGASGCGKSTTIALLE 1152
                   44899************998775 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.3     0.014       8.5       8      30 ..     472     494 ..     468     644 .. 0.80
   2 !   12.5   0.0   0.00022      0.13       6      31 ..    1132    1157 ..    1128    1297 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.014
      AAA_22   8 lvvtGesGtGKTtllrrlleqld 30 
                 ++++G sG+GK+t +  + + ++
  KKY18115.1 472 TALVGASGSGKSTIVGLVERFYN 494
                 789**********9988887774 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00022
      AAA_22    6 gilvvtGesGtGKTtllrrlleqlde 31  
                  + ++++G sG+GK+t+++ l + +d 
  KKY18115.1 1132 QYIALVGASGCGKSTTIALLERFYDP 1157
                  6799****************999964 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0022       1.3      20      48 ..     467     494 ..     463     574 .. 0.86
   2 ?   -1.7   0.2       3.1   1.9e+03     186     235 ..     670     727 ..     642     774 .. 0.69
   3 !   10.1   0.0   0.00081      0.49      26      73 ..    1134    1177 ..    1125    1228 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0022
      AAA_15  20 dlseeltvliGkNnsGKSsilealdlFln 48 
                 +  + +t l+G+ +sGKS+i+ + + F n
  KKY18115.1 467 PAGK-TTALVGASGSGKSTIVGLVERFYN 494
                 5567.9***************99999988 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.1
      AAA_15 186 lknvlksaiiklllisakRnvsdedsekkssllgklkekileealqekl.........e 235
                  + +l +++ ++ l +a+R   d+++ +  +   +++e++le + q+k          e
  KKY18115.1 670 HNDLLDKQAAYFNLVQAQRIGGDQTEAEDGTETPEAMEEKLERS-QSKTsdglpsedpE 727
                 45677788899999999999999888887777777777777764.33333555554430 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00081
      AAA_15   26 tvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifenise 73  
                    l+G+ ++GKS+ + +l+ F +         i +++ed++  + ++ 
  KKY18115.1 1134 IALVGASGCGKSTTIALLERFYDPL----AGSILVDNEDISALNLNDY 1177
                  689********************88....7788888888887765554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1    0.0012       0.7      19      50 ..     470     501 ..     462     508 .. 0.87
   2 ?   -2.4   0.0       5.6   3.4e+03      87     117 ..     605     635 ..     580     643 .. 0.71
   3 !    6.8   0.0    0.0083       4.9      17      45 ..    1130    1158 ..    1124    1172 .. 0.83
   4 ?    0.2   0.0      0.87   5.2e+02      84     118 ..    1259    1293 ..    1223    1310 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
      AAA_30  19 rvavltGpAGtGKttalkalreaweaaggrvi 50 
                 ++++l+G+ G+GK+t+++ +++ ++  gg+v 
  KKY18115.1 470 KTTALVGASGSGKSTIVGLVERFYNPVGGQVT 501
                 4789*******************999988886 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.6
      AAA_30  87 epgtllivDEagmvdtkqlaallkaaekaga 117
                 ++ ++l+ DEa  +  ++ + +++aa +a a
  KKY18115.1 605 SDPKILLLDEATSALDTKSEGVVQAALDAAA 635
                 4458899999988866666666666655544 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0083
      AAA_30   17 gdrvavltGpAGtGKttalkalreaweaa 45  
                  + ++ +l+G+ G GK+t+++ l++ ++  
  KKY18115.1 1130 PGQYIALVGASGCGKSTTIALLERFYDPL 1158
                  567889***************99988755 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.87
      AAA_30   84 arlepgtllivDEagmvdtkqlaallkaaekagak 118 
                  a l++ ++l+ DEa  +  ++ +++++aa +a ak
  KKY18115.1 1259 ALLRDPKILLLDEATSALDSESEKVVQAALDAAAK 1293
                  44556688888888888777777777777666554 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0045       2.7      20      54 ..     473     507 ..     468     517 .. 0.89
   2 !    8.2   0.0    0.0023       1.4      19      54 ..    1134    1169 ..    1127    1189 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0045
  Zeta_toxin  20 llgGqpGAGKselaellkdelerqgnvvrldpDdl 54 
                  l+G++G+GKs++  l+++  ++ g+ v+ld+ d+
  KKY18115.1 473 ALVGASGSGKSTIVGLVERFYNPVGGQVTLDGHDI 507
                 589****************9999999999998776 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0023
  Zeta_toxin   19 illgGqpGAGKselaellkdelerqgnvvrldpDdl 54  
                  i l+G++G+GKs++++ll++  ++  + + +d  d+
  KKY18115.1 1134 IALVGASGCGKSTTIALLERFYDPLAGSILVDNEDI 1169
                  7799**************999887777777776665 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1     0.013       7.7       2      16 ..     472     486 ..     471     508 .. 0.88
   2 ?   -2.0   0.0         4   2.4e+03     235     270 ..     587     619 ..     541     622 .. 0.77
   3 !    8.3   0.0    0.0029       1.7       3      60 ..    1135    1199 ..    1133    1214 .. 0.77
   4 ?    1.2   0.0      0.45   2.7e+02     236     269 ..    1245    1275 ..    1241    1280 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.013
      AAA_21   2 nvliGpNgsGKSnLL 16 
                 ++l+G+ gsGKS++ 
  KKY18115.1 472 TALVGASGSGKSTIV 486
                 89***********96 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngL 270
                 + lS G+k+ +a+  a+ +++   ++ll+DE  + L
  KKY18115.1 587 FLLSGGQKQRIAISRAIVSDP---KILLLDEATSAL 619
                 567999999999999999999...99***9966555 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0029
      AAA_21    3 vliGpNgsGKSnLLdaldllarl.......drdvegltdelsggggirkipslldlydpeipfef 60  
                  +l+G+ g+GKS+ + +l+ + +        d++ ++  + ++ +++i+ ++ +++ly+ +i++++
  KKY18115.1 1135 ALVGASGCGKSTTIALLERFYDPlagsilvDNEDISALNLNDYRSHIALVSQEPTLYQGSIRDNI 1199
                  79***************999888777777777777777777777777777777777776666665 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.45
      AAA_21  236 elSdGtkrllalltallralkkgsllliDEpEng 269 
                   lS G+k+ +a++ allr++   ++ll+DE  + 
  KKY18115.1 1245 LLSGGQKQRIAIARALLRDP---KILLLDEATSA 1275
                  5799***999********99...9******5555 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0047       2.8      28      50 ..     474     496 ..     468     610 .. 0.77
   2 !    7.7   0.0    0.0028       1.7      26      50 ..    1134    1158 ..    1125    1202 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0047
                 EEESTTSSHHHHHHHHHHHCS-- CS
     G-alpha  28 llGqseSGKsTilkqlkllykkg 50 
                 l+G+s+SGKsTi+  ++++y++ 
  KKY18115.1 474 LVGASGSGKSTIVGLVERFYNPV 496
                 89************999999875 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0028
                  EEEEESTTSSHHHHHHHHHHHCS-- CS
     G-alpha   26 llllGqseSGKsTilkqlkllykkg 50  
                  + l+G+s++GKsT++  l+++y++ 
  KKY18115.1 1134 IALVGASGCGKSTTIALLERFYDPL 1158
                  789*****************99775 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       5.7   3.4e+03      18      63 ..     292     340 ..     287     343 .. 0.80
   2 ?    4.0   0.1     0.087        52       3      18 ..     473     488 ..     471     508 .. 0.85
   3 !   10.8   0.0   0.00075      0.45       2      21 ..    1134    1153 ..    1133    1166 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 5.7
      AAA_28  18 aLaar..gypvvpEaareileeklakgedalpwv.edllafaervleeq 63 
                  L+a   g +vv+E++  i +  ++ ++d l+ + +++l++a+++  +q
  KKY18115.1 292 SLQAYasGGTVVEEVFSSIRNAVAFGTQDRLARQyDEFLEVAQLFGTKQ 340
                 567655688999*******999999999999988899999998876655 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.087
      AAA_28   3 vitGgestGKTtllea 18 
                 +++G++++GK+t++  
  KKY18115.1 473 ALVGASGSGKSTIVGL 488
                 799*********9865 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00075
      AAA_28    2 ivitGgestGKTtlleaLaa 21  
                  i+++G++++GK+t+++ L++
  KKY18115.1 1134 IALVGASGCGKSTTIALLER 1153
                  89*************99985 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1    0.0073       4.4      26      59 ..     472     503 ..     462     506 .. 0.77
   2 !    7.2   0.0    0.0081       4.9      26      51 ..    1134    1157 ..    1131    1168 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0073
       DUF87  26 lAilgsTGsGKSntvavLleellekkgatililD 59 
                 +A +g +GsGKS+ v+ L+e+ +  + +  + lD
  KKY18115.1 472 TALVGASGSGKSTIVG-LVERFY-NPVGGQVTLD 503
                 799************9.567777.5555555555 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0081
       DUF87   26 lAilgsTGsGKSntvavLleellekk 51  
                  +A +g +G GKS+t+a+L e+ + ++
  KKY18115.1 1134 IALVGASGCGKSTTIALL-ERFY-DP 1157
                  799************965.6666.44 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0073       4.3      26      50 ..     462     486 ..     448     494 .. 0.88
   2 ?    5.8   0.0     0.014       8.5      27      51 ..    1125    1149 ..    1117    1160 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0073
       AAA_7  26 lelllknkkpvllvGptGtGKtvii 50 
                 ++l++ ++k + lvG +G+GK++i+
  KKY18115.1 462 VDLFIPAGKTTALVGASGSGKSTIV 486
                 6889999****************98 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.014
       AAA_7   27 elllknkkpvllvGptGtGKtviik 51  
                  +l ++ ++ + lvG +G+GK+++i 
  KKY18115.1 1125 NLTVRPGQYIALVGASGCGKSTTIA 1149
                  6778889999************997 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.016       9.8      62      84 ..     605     627 ..     575     633 .. 0.81
   2 !    7.8   0.3    0.0066         4      62      86 ..    1262    1286 ..    1225    1290 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.016
     SbcCD_C  62 palrlvfLDEAFsklDeesiatl 84 
                 +++++++LDEA s lD +s   +
  KKY18115.1 605 SDPKILLLDEATSALDTKSEGVV 627
                 4689************9986655 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0066
     SbcCD_C   62 palrlvfLDEAFsklDeesiatlle 86  
                  +++++++LDEA s lD+es + + +
  KKY18115.1 1262 RDPKILLLDEATSALDSESEKVVQA 1286
                  3489*************99776655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0      0.03        18       3      20 ..     474     491 ..     473     582 .. 0.70
   2 !    7.6   0.0    0.0086       5.1       1      20 [.    1134    1153 ..    1134    1185 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.03
      AAA_18   3 ltGtpGvGKttlakeLsk 20 
                 l G++G+GK+t+   +++
  KKY18115.1 474 LVGASGSGKSTIVGLVER 491
                 89**********988743 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0086
      AAA_18    1 IlltGtpGvGKttlakeLsk 20  
                  I+l G++G+GK+t    L++
  KKY18115.1 1134 IALVGASGCGKSTTIALLER 1153
                  89************999954 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.015         9       4      16 ..     474     486 ..     472     568 .. 0.85
   2 ?    6.2   0.0     0.018        11       3      19 ..    1135    1151 ..    1134    1210 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.015
      AAA_33   4 lvGlpGsGKstla 16 
                 lvG++GsGKst +
  KKY18115.1 474 LVGASGSGKSTIV 486
                 79*********76 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.018
      AAA_33    3 llvGlpGsGKstlaerl 19  
                   lvG++G+GKst +  l
  KKY18115.1 1135 ALVGASGCGKSTTIALL 1151
                  68**********87655 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.079        47       4      38 ..     472     506 ..     470     511 .. 0.81
   2 ?    8.1   0.0    0.0031       1.8       3      26 ..    1133    1156 ..    1131    1169 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.079
                 EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEES CS
       SRP54   4 illvGlqGaGKTttlaKLaallkkegkkvllvaaD 38 
                 ++lvG  G+GK t ++ + + ++  g +v l   D
  KKY18115.1 472 TALVGASGSGKSTIVGLVERFYNPVGGQVTLDGHD 506
                 689************98888888777777766555 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0031
                  EEEEEESTTSSHHHHHHHHHHHHH CS
       SRP54    3 villvGlqGaGKTttlaKLaallk 26  
                  +i+lvG  G GK tt+a L + + 
  KKY18115.1 1133 YIALVGASGCGKSTTIALLERFYD 1156
                  799**************9988775 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.018        11       4      24 ..     474     494 ..     472     503 .. 0.87
   2 ?    5.3   0.0      0.03        18       4      23 ..    1136    1155 ..    1134    1173 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.018
                 EE--SSSSHHHHHHHGGGGBS CS
       AAA_5   4 LvGppGtgKselaerlaaaln 24 
                 LvG++G+gKs+++  + +++n
  KKY18115.1 474 LVGASGSGKSTIVGLVERFYN 494
                 9************99998874 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.03
                  EE--SSSSHHHHHHHGGGGB CS
       AAA_5    4 LvGppGtgKselaerlaaal 23  
                  LvG++G+gKs+ +  l +++
  KKY18115.1 1136 LVGASGCGKSTTIALLERFY 1155
                  9**********999998765 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.05        30      56      81 ..     472     497 ..     440     530 .. 0.72
   2 ?    6.3   0.0    0.0081       4.8      52      95 ..    1130    1172 ..    1125    1187 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.05
      DUF815  56 vLLwGarGtGKSslvkallneyaeeg 81 
                   L+Ga G+GKS++v  + + y+  g
  KKY18115.1 472 TALVGASGSGKSTIVGLVERFYNPVG 497
                 5699*********9977766666554 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0081
      DUF815   52 pannvLLwGarGtGKSslvkallneyaeegLrlievekedlkel 95  
                  p + + L+Ga G+GKS+++ all+++ +     i v++ed++ l
  KKY18115.1 1130 PGQYIALVGASGCGKSTTI-ALLERFYDPLAGSILVDNEDISAL 1172
                  667788***********99.677777777766777777777665 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.14        83       3      24 ..     473     494 ..     472     521 .. 0.78
   2 ?    7.4   0.0    0.0053       3.2       2      22 ..    1134    1154 ..    1133    1183 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.14
         PRK   3 gvagsSGaGkttvarklekifg 24 
                 ++ g+SG+Gk+t+   +e   +
  KKY18115.1 473 ALVGASGSGKSTIVGLVERFYN 494
                 578*********9877666555 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0053
         PRK    2 IgvagsSGaGkttvarkleki 22  
                  I++ g+SG+Gk+t+ + le  
  KKY18115.1 1134 IALVGASGCGKSTTIALLERF 1154
                  999**********99888765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.69   4.2e+02       3      20 ..     470     487 ..     468     534 .. 0.79
   2 ?    8.2   0.0    0.0041       2.5       4      44 ..    1133    1180 ..    1131    1203 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.69
      AAA_14   3 kilvitGaRrvGKTtllk 20 
                 k  +++Ga  +GK+t++ 
  KKY18115.1 470 KTTALVGASGSGKSTIVG 487
                 678899*********984 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0041
      AAA_14    4 ilvitGaRrvGKTtllkqlikell........vkkesilyinldderdk 44  
                   ++++Ga  +GK+t +  l +  +        v++e+i  +nl+d r  
  KKY18115.1 1133 YIALVGASGCGKSTTIALLERF-YdplagsilVDNEDISALNLNDYRSH 1180
                  6899**********87655322.23557999999999999999998774 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1    0.0023       1.4       3      41 ..     470     507 ..     468     519 .. 0.85
   2 ?    0.6   0.0      0.75   4.5e+02       4      24 ..    1133    1153 ..    1130    1165 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0023
                 EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH CS
  APS_kinase   3 vvvwltGlsgsGKstianalekkLvekgisvylLdGdnv 41 
                  +  l G sgsGKsti   +e+  +  g +v +LdG  +
  KKY18115.1 470 KTTALVGASGSGKSTIVGLVERFYNPVGGQV-TLDGHDI 507
                 567799***************9999999886.5899877 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.75
                  EEEEESSTTSSHHHHHHHHHH CS
  APS_kinase    4 vvwltGlsgsGKstianalek 24  
                   + l G sg GKst    le+
  KKY18115.1 1133 YIALVGASGCGKSTTIALLER 1153
                  67899********98777775 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1       0.1        61       3      19 ..     470     486 ..     468     496 .. 0.83
   2 ?    6.6   0.0    0.0096       5.7       5      23 ..    1134    1154 ..    1131    1286 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.1
      AAA_24   3 lkiliyGpsgiGKTtla 19 
                 +  +++G sg+GK+t++
  KKY18115.1 470 KTTALVGASGSGKSTIV 486
                 67899**********86 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0096
      AAA_24    5 iliyGpsgiGKTtlakel..g 23  
                  i+++G sg GK+t+++ l   
  KKY18115.1 1134 IALVGASGCGKSTTIALLerF 1154
                  89*************999551 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       4.3   2.6e+03      50      63 ..     474     487 ..     469     494 .. 0.84
   2 ?   10.2   0.0   0.00087      0.52      39      67 ..    1125    1153 ..    1118    1159 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 4.3
       Rad17  50 isGPsGCgkstvvk 63 
                 + G sG gkst+v 
  KKY18115.1 474 LVGASGSGKSTIVG 487
                 689********986 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00087
       Rad17   39 vLesrkkriLLisGPsGCgkstvvkvLsk 67  
                   L  r+ + + + G sGCgkst++  L +
  KKY18115.1 1125 NLTVRPGQYIALVGASGCGKSTTIALLER 1153
                  5677788888999***********99865 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.36   2.2e+02       3      16 ..     474     487 ..     472     500 .. 0.86
   2 ?   -1.5   0.0       5.3   3.2e+03      33      53 ..     974     994 ..     962     995 .. 0.78
   3 ?    6.0   0.0     0.026        15       1      18 [.    1134    1151 ..    1134    1178 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.36
  RNA_helicase   3 lyGpsgeGKStlak 16 
                   l+G+sg GKSt++ 
    KKY18115.1 474 LVGASGSGKSTIVG 487
                   79*********975 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 5.3
  RNA_helicase  33 svysrnpeddfwdgYtgqevv 53 
                   +v s + e d+wd+Y+g  vv
    KKY18115.1 974 TVASLTRELDVWDNYHGLLVV 994
                   556678899*******98776 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.026
  RNA_helicase    1 iwlyGpsgeGKStlakeL 18  
                    i l+G+sg+GKSt++  L
    KKY18115.1 1134 IALVGASGCGKSTTIALL 1151
                    5689*********98764 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.5     0.013       7.5      20      36 ..     470     486 ..     461     488 .. 0.89
   2 ?    3.2   0.0      0.18   1.1e+02      23      37 ..    1135    1149 ..    1121    1152 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.013
      AAA_23  20 gltlItGpNGaGKTTil 36 
                 + t+++G  G+GK+Ti+
  KKY18115.1 470 KTTALVGASGSGKSTIV 486
                 5799***********96 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.18
      AAA_23   23 lItGpNGaGKTTild 37  
                  +++G  G+GK+T + 
  KKY18115.1 1135 ALVGASGCGKSTTIA 1149
                  789*********886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1108  (0.0617993); expected 358.6 (0.02)
Passed bias filter:                      675  (0.0376485); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 1.10u 0.32s 00:00:01.42 Elapsed: 00:00:00.49
# Mc/sec: 8228.28
//
Query:       KKY18116.1  [L=344]
Description: putative mfs monosaccharide [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-31  107.6   2.4    2.4e-28   99.2   2.4    2.0  1  Sugar_tr  Sugar (and other) transporter
     0.0039   16.2  13.9        1.1    8.1  12.7    3.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   2.4   2.7e-32   2.4e-28     155     450 ..      24     314 ..      20     316 .. 0.83

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 2.7e-32
                 HHHHHHHHTSS-.TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHC...HHHHHHHHHHHHHHHHHHH......HTTHHHH CS
    Sugar_tr 155 aifglglnktsn.adgwrillglqlvpallllilllflPESPrylvekgkeeeakevlaklrge...edadrelaeekdsleaeqeee.kaswkellss 248
                 +++ ++  kt++ +  wr++lg+q+v+ l++++l+ f PES r l + g+ eea  +l++ r        d+e++e++++++ e ++   ++ +++l+ 
  KKY18116.1  24 YWMEYACTKTQSlSFAWRFPLGFQIVLLLAIIVLVNFYPESSRRLEKTGRFEEAHDFLERCRVRpdtVMLDQEFEEIINATRLEHRAAsITFADMILKD 122
                 8999999999999999********************************************555522356799999999999999777755666666666 PP

                 SH.....HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHH...HHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH.....HH CS
    Sugar_tr 249 kt..vrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnf...vatfvaiflvdrfGRRtllllGaagmaicfvilg...ival 339
                  +   r+r+ +g+++q++q ltGi +i   +p++f+ +g+s +  +ti+ g   f   ++   ai+l d++GRR+l+l G+++  i++ + g     ++
  KKY18116.1 123 DEpkTRKRVPLGCGMQVTQKLTGIDFISTNAPEMFSLAGFSGD-KATILAGDNFFgytASLALAIWLADKVGRRKLMLAGCTILGIVLKVGGvlsHETI 220
                 55899**************************************.777777755441114556789*******************999999887665555 PP

                 HHTTSS.....CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 340 llvaks..kaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfff 436
                  + +++  ka +++a v+ +l +    +g  +v w++ s+++                 +a  +++ + p++ +a+g  y  ++fa+++ +++i +++f
  KKY18116.1 221 RTANNEegKAQQYGAGVAAVLSVYSAVCGSLTVAWIYRSDFS-----------------IAGGVVNEIVPYLISAVG--YWIFIFAIVNFAMLIPIYLF 300
                 555555578888888887777776666777778888866654.................6788999999*******9..666789************** PP

                 S--STT--CCCCGG CS
    Sugar_tr 437 vpetkgrtleeiee 450
                 ++et +r le+++ 
  KKY18116.1 301 YIETTNRRLEDLDI 314
                 **********9875 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5   0.0    0.0064        58     147     187 ..      37      75 ..      33     118 .. 0.67
   2 !    8.1  12.7   0.00012       1.1      11      75 ..     145     208 ..     139     312 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.0064
       MFS_1 147 slgWravfyilaivsllafvlfllllpeepperkrkspkee 187
                 s+ Wr +  +  +++l  +vl + ++pe+ ++ ++ +++ e
  KKY18116.1  37 SFAWRFPLGFQIVLLLAIIVL-VNFYPESSRRLEK-TGRFE 75 
                 456888877777777777665.2455444444444.44333 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00012
       MFS_1  11 arsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg 75 
                 +++++++++p  + +  g+s++ + +l++  ++g+ ++  ++ +l+d++Grr+++l+g +++++ 
  KKY18116.1 145 GIDFISTNAP-EMFSLAGFSGDKATILAGDNFFGYTASLALAIWLADKVGRRKLMLAGCTILGIV 208
                 6678899999.5666669999999999999***********************999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.33s 00:00:00.90 Elapsed: 00:00:00.54
# Mc/sec: 1926.50
//
Query:       KKY18117.1  [L=665]
Description: hypothetical protein UCRPC4_g05154 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0076   16.5   1.1      0.019   15.2   1.1    1.7  1  Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centrom
  ------ inclusion threshold ------
      0.038   14.1   1.6       0.15   12.1   0.1    2.5  2  bZIP_1        bZIP transcription factor
      0.056   13.8   0.4         19    5.7   0.0    2.6  2  DASH_Hsk3     DASH complex subunit Hsk3 like
      0.085   13.3   0.7        5.7    7.4   0.0    2.8  2  FlaC_arch     Flagella accessory protein C (FlaC)
       0.56   10.0   2.5         28    4.6   0.2    3.0  3  DivIC         Septum formation initiator
       0.99   10.1   6.6        2.3    8.9   0.4    3.3  3  SlyX          SlyX


Domain annotation for each model (and alignments):
>> Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.1   6.2e-06     0.019       3      99 ..      52     157 ..      50     162 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.2e-06
                   EEETTTS-EEEECCCEEE.........EECCCEEEES---CCCEEEECEEEETTSTT.....EEEEEEEETTT--EEEEEEEECSCC.CCCCCTCEE CS
  Yippee-Mis18   3 fqCkkCktilgdslqlvs.........egralnivvlkkvtrnvvvgkelvtdeegk.....ctystlsCkgCnsvlGwkYksteee.lkykrglfi 84 
                   ++C +C ++lg   + +          +++ + + +  + ++nv+ +         k     c +s+ +C++C++v+G +  +  ++  + ++g  +
    KKY18117.1  52 VCCLNCDSQLGIYENRWLrltstyivtKKKGTHFGTTFAQEENVIPSGPE------KklvggCRVSEARCRKCDKVIGQMCIAPGSAeSESLVGSIF 142
                   69********9877666624333333222223333333334444433333......135556*****************998887776777777777 PP

                   EEGGGEEEEESSSSX CS
  Yippee-Mis18  85 letkaitsyslgeke 99 
                     + +i+ +++ + e
    KKY18117.1 143 YRSLRIHLMHVTSRE 157
                   777777766666655 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.33   9.9e+02      22      55 ..     258     292 ..     252     307 .. 0.74
   2 ?   12.1   0.1   5.1e-05      0.15      33      58 ..     317     342 ..     316     346 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.33
                 HHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH CS
      bZIP_1  22 qRKqaeieeLerrvkaLekeNksLk.seleelkke 55 
                 qR  ++ + L+++++a+++  ++++ s++   +ke
  KKY18117.1 258 QRISESLDSLQTQMEAFTGLVEDMRdSKARPSAKE 292
                 56677888999999999999999983344445555 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 5.1e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  33 rrvkaLekeNksLkseleelkkevek 58 
                  + + Le+eN +Lk++le+l++ +++
  KKY18117.1 317 GKIASLESENDQLKKRLETLADLMSS 342
                 58899****************98875 PP

>> DASH_Hsk3  DASH complex subunit Hsk3 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0063        19       1      26 [.     254     279 ..     254     281 .. 0.92
   2 ?    5.6   0.2    0.0069        21       4      26 ..     319     341 ..     318     343 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0063
   DASH_Hsk3   1 qRqyshLasqLaqLqaNLadteelle 26 
                 +R +++ ++ L +Lq +++ ++ l+e
  KKY18117.1 254 SRDIQRISESLDSLQTQMEAFTGLVE 279
                 6999******************9997 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0069
   DASH_Hsk3   4 yshLasqLaqLqaNLadteelle 26 
                 ++ L s++ qL ++L+++ +l+ 
  KKY18117.1 319 IASLESENDQLKKRLETLADLMS 341
                 799****************9985 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.042   1.3e+02       8      35 ..     256     283 ..     250     284 .. 0.85
   2 ?    7.4   0.0    0.0019       5.7      14      35 ..     316     338 ..     296     344 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.042
   FlaC_arch   8 klsklsteletvkkeneelsksveelke 35 
                 +++++s +l+++++++e     ve++ +
  KKY18117.1 256 DIQRISESLDSLQTQMEAFTGLVEDMRD 283
                 6899999999999999999888888866 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0019
   FlaC_arch  14 t.eletvkkeneelsksveelke 35 
                 t +++++++en++l+k +e+l +
  KKY18117.1 316 TgKIASLESENDQLKKRLETLAD 338
                 1699***************9975 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.2    0.0094        28      18      55 ..     249     286 ..     246     293 .. 0.90
   2 ?    4.0   0.0     0.014        43      32      50 ..     318     336 ..     316     347 .. 0.62
   3 ?   -2.8   0.0       1.8   5.5e+03      39      57 ..     542     559 ..     538     561 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0094
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXX CS
       DivIC  18 aykqlkqeiaalqaelaklkaeneeLeaevkdLksded 55 
                 ++ q+ ++i+++ + l++l+ + e+ +  v+d++++++
  KKY18117.1 249 TLTQQSRDIQRISESLDSLQTQMEAFTGLVEDMRDSKA 286
                 788999***************************98765 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHHHHCC- CS
       DivIC  32 elaklkaeneeLeaevkdL 50 
                 ++a+l  en++L+++++ L
  KKY18117.1 318 KIASLESENDQLKKRLETL 336
                 4555555555555555555 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.8
                 HHHHHHHHHCC-XXXXXXX CS
       DivIC  39 eneeLeaevkdLksdedyi 57 
                 ++++  a  ++L+ ++d i
  KKY18117.1 542 TRASVSASAENLH-SDDEI 559
                 6778889999996.55555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2         3   9.1e+03      40      65 ..      22      42 ..       8      42 .. 0.52
   2 ?    8.9   0.4   0.00077       2.3      24      53 ..     248     277 ..     245     294 .. 0.52
   3 ?    3.3   0.0     0.042   1.3e+02      32      56 ..     318     342 ..     315     355 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3
                HHHHHHT-XXXXXXXXXXXXXXXXXX CS
        SlyX 40 lrllaerlkeleessgaseaeeepPP 65
                      ++ + ++s +a  a   pPP
  KKY18117.1 22 T-----KMLSSRQSLPAPSASSRPPP 42
                3.....34444445555444666666 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00077
                 HHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX  24 dvvaeqqqqidrlqrqlrllaerlkelees 53 
                 +++++q ++i+r+ + l+ l+ ++++    
  KKY18117.1 248 QTLTQQSRDIQRISESLDSLQTQMEAFTGL 277
                 556666666666666666666666443322 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.042
                 HHHHHHHHHHHHHHT-XXXXXXXXX CS
        SlyX  32 qidrlqrqlrllaerlkeleessga 56 
                 +i+ l+ + ++l++rl++l++ +++
  KKY18117.1 318 KIASLESENDQLKKRLETLADLMSS 342
                 5777888888888888777665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1402  (0.0781973); expected 358.6 (0.02)
Passed bias filter:                      670  (0.0373696); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.78u 0.36s 00:00:01.14 Elapsed: 00:00:00.54
# Mc/sec: 3722.18
//
Query:       KKY18118.1  [L=1360]
Description: putative nucleoporin nup157 170 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-90  301.9   0.7      1e-89  301.3   0.7    1.3  1  Nucleoporin_N  Nup133 N terminal like
    4.5e-45  154.5   4.9    7.2e-44  150.5   3.7    2.4  2  Nucleoporin_C  Non-repetitive/WGA-negative nucleoporin C-term


Domain annotation for each model (and alignments):
>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.3   0.7   1.1e-93     1e-89       3     434 .]     117     571 ..     115     571 .. 0.94

  Alignments for each domain:
  == domain 1  score: 301.3 bits;  conditional E-value: 1.1e-93
                    -SCEEEEEEE--HCHHHTTS--SS-EEEEEECTTTEEEEEETTEEEEEETTSSSS...EEEEEE----S---EEEEEE---SSSS-SSSCEEEEEC CS
  Nucleoporin_N   3 tdfykvsklalPdelleelnhtesstkgglfpeigrawitvdnklflWnYnstasspstdtipydgeehtilavglLvkpkpgtfveevgllLvva 98 
                     +f k++ ++lPd+++e++n ++ st++glf+e++ aw+++dn+l++W+Y+s+     ++ + +++++++i+av+ L  p+pg+f + +++++v+ 
     KKY18118.1 117 APFQKTKMYNLPDQIFEQYNRAQVSTSMGLFAELNHAWFAIDNALYMWDYTSPS----PQLLGFESQPNNITAVS-LAIPRPGVFLPTISHVIVIG 207
                    578888888********************************************9....9****************.******************** PP

                    TTSEEEEECECCS--------EEEEEEEE--EETT.TTEEEEEEETTTC-EEEEETTS.SEEEEEEC-SSS-CEEEEEEEEE-SSSS-....--SS CS
  Nucleoporin_N  99 ttgeivyweviysaasllstnelslfntdlsvssdgeivtqvinseptgriflagstg.rlyeltyrdssgwpslkckkicltkgglssll.silp 192
                    tt e+ +++  ++ ++    + +sl++t++svs + +ivt++ +s++tgrif++g ++ +++el y+++++w+s++c k+++t  gl  l+   lp
     KKY18118.1 208 TTKEVLLLGMGSETGQG-GVKTFSLYQTGMSVSLKNLIVTTIATSDRTGRIFFGGDGDnDVHELVYQQEERWFSSRCAKVNHTAAGLANLGlPELP 302
                    *********99999997.7799************************************9*****************************66556677 PP

                    S--G----GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHHHHHH.HHSCHTTTCGCTTT-EEEEEEES-TTTSSCEEEEE CS
  Nucleoporin_N 193 gvlsgasereeivqlridssrrilytlsskgvirvydlsasngesslksdidirqilleaitesliasaplaskslkildispvsaeessllhlva 288
                     + +  ++ e++ ql++d+sr++lytlss + irv++++ s g  +l  + +  +i+++   +++i++++  + +++i++ispv+ +e+s+ hlva
     KKY18118.1 303 FFGQ--KQTETVQQLVCDDSRNLLYTLSSASAIRVFHIN-SDGALNLAITRTAAEIFSNI--GHVISHNDTLNPRIRIVSISPVPISEASKYHLVA 393
                    7766..*********************************.7789**************99..********************************** PP

                    EECSSSEEEEEEEEE.....EEECTTT-EEEEEEEEE..............EEEECCCCCSSSSSSSBECC-CC...SSETTCEEEEEEES-...- CS
  Nucleoporin_N 289 itsngvrlylllsss.....ssdspsalslvsvrfpp..............krlntysskllenkkksklllps...kiispgiflfvvfdk...s 359
                     t++g r+yl++ ss     s + ps++  ++v+ pp              +++ ++ ++  +n  +++ l  +   +++spg f++ v +    +
     KKY18118.1 394 TTATGYRIYLSVLSSsgwvqSTSVPSNMLAQHVKTPPvdpvrssatgqtssTPGVSFQTTNSANG-PIRTLTVTrtaQRFSPGYFFCFVDKDgqqN 488
                    ***************9***99999999999***********999888877766666666666666.9999999999*********9998888999* PP

                    SEEEEEEEEE-TTTTSSS.......ESEEEECCS--SE-EEE...EE--T--T--CCCCCCSSTTCTTTTS---.EEEETTTEEEE CS
  Nucleoporin_N 360 savvlvslpdtgilkksq.......lvedasflpldgkwedi...islrksfdatilpsgyenesatqykePar.valltntGvvi 434
                    ++++++s+pd+g+l   +         e a++l+l ++ edi   i+       t++p  ++ne+a q+ +P++ +a+ltntGv+i
     KKY18118.1 489 TDTLFISTPDSGRLARPPepgqpirTAETATWLQLGSRAEDIgvsIPY---SPPTSTPGAFSNELAVQFDKPSPeIAILTNTGVHI 571
                    **************9999999*********************655555...5599**************999999*********97 PP

>> Nucleoporin_C  Non-repetitive/WGA-negative nucleoporin C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.3   0.0    0.0059        53       6      46 ..     717     768 ..     713     777 .. 0.92
   2 !  150.5   3.7     8e-48   7.2e-44     180     595 ..     808    1239 ..     802    1240 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.0059
                    XXXXXXXXXXXXXXXXXXXXXXXXXX...........XXXXXXXXXXXXXX. CS
  Nucleoporin_C   6 qnleyrlssLeiLaeflksngeslsr...........dtrwellwqAEkiaa 46 
                    q+l++    L+ L +f+ +n++ +++           ++++e+++q E+ a+
     KKY18118.1 717 QKLQDVQRELSSLQTFFTTNKSFIDGlsgpealtratTKQEEVALQGEHRAV 768
                    678888999***************************************9885 PP

  == domain 2  score: 150.5 bits;  conditional E-value: 8e-48
                     XXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHH......HHHHHHHHHHXXXXXXX CS
  Nucleoporin_C  180 Ltklllkdlfapn.........lssiinrnisrgesieleatllqeicgslcsltdvllfraiErlrwake......qkdkklqnaikllekay 258 
                     +++l++++lf+           + +i+nrni++g++ e+ a++l+++cgs+cs+ dv+lf+a E l++a+e        ++ l+++  l+++  
     KKY18118.1  808 FLQLTFEALFSSIkgyeiakdlVKAIVNRNIAKGSNVETVAEALRRRCGSFCSAEDVVLFKAQELLKRASEagtnteYGRNLLNESLVLFQQVA 901 
                     5566777777766777888888899************************************************9988788899*********** PP

                     XX.........XXXHHHHHHHHHHHHTSXHHHHHHHHHHHHH..HHHXS.......SSSXHHHH......HHHHHHH................. CS
  Nucleoporin_C  259 dearkeqilkLlsigkleeaielaekledfralvellleianklasdkg.......ederkelyekaeelekriely................. 328 
                     d+         l ++ l++a++   + +++ + + l l  a+  + dk        +d +   + ++ + e+r++ y                 
     KKY18118.1  902 DS---------LPMDYLQSAVKQYVSMQFYAGSILLALRVAK--EGDKAdealswmTDGKPDSDGRQAKFEARTQCYnfvhdiinamedaaqsn 984 
                     **.........******************************9..5555556789998888888888889999***99***************** PP

                     .....................SSSXXHHHHHHHHHHHHHTTXGGGGGGX..XXTTHHHHHHHTX....XHHHHHHTHHHHXXSHHHHHHHHHHH CS
  Nucleoporin_C  329 .....................fekfgkaFayalYdwlisqgqqekLLdlkedtsfilpFLrekp....elakllWiydvkekdfeeAAeiLysL 397 
                                           ++ ++ F ++lYdw++sqg   +LL+   d+ fi  +L+ k+    + a+ll  y+++ +++++AA++ + L
     KKY18118.1  985 gyldgqpslletrrreaydviSKSTDEVFLTNLYDWYLSQGWDHRLLET--DSFFIVTYLERKAsdniSHADLLCRYYSRANRYYDAAHVQLML 1076
                     ********************88999************************..***************9999************************ PP

                     HSSSSXXXHHHHHH.HHHHX---HHH................HGGGHHHHHHHHHHHHHHHH.......................H-TT..S-H CS
  Nucleoporin_C  398 alskeqlvlskrie.LSlakLaqLaeleesekekkglekklekieellevaaiQddllalilpsiegaidekaeveLamekfgkklderpalrq 490 
                     a s++ql l++rie LS+ak a  ++ ++  + +++ ++ l+ i + l+va+iQdd+ +  +                       +d+r  l+ 
     KKY18118.1 1077 AKSNFQLPLERRIEyLSRAK-ANAST-NTPGTGRQSRQRLLNEITDCLDVANIQDDIFQRLK-----------------------ADKR--LQG 1143
                     ********************.55555.5777777799*************************.......................****..*** PP

                     HHHHHHHHHHHHS---HHHHHHHTT.........TTTT-HHHHHHHHHHTT---HHH............HHHHHHHHHHHHHHH-......... CS
  Nucleoporin_C  491 llkdelkklLkhkildasdLidlltLidtkeeeedplgefelALkvlkvsdlrneeeealekliWRRcvIrddWeelnetkkked......... 575 
                     + + e+ k + ++ l     +d ++         d+ g++ l+L +++v+d+rn  +            I++ W+ l+++ +            
     KKY18118.1 1144 EKRAEVLKDVGGRLLV----MDEYA---------DSAGYYDLCLLIFQVADHRNASD------------IKNTWQLLLQKIHDGMsksqdsqpw 1212
                     *************996....689**.........***********************............***********9888789999**** PP

                     .......HHHHHHHTT-TTTS-HHHHH CS
  Nucleoporin_C  576 .......akvekklsstalvftlsell 595 
                            ++++++l+ +++ f+++ ll
     KKY18118.1 1213 eaiaeqvRDLGARLRLSETTFPINLLL 1239
                     *****9999*************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:00.55
# Mc/sec: 7441.67
//
Query:       KKY18119.1  [L=201]
Description: hypothetical protein UCRPC4_g05156 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-16   59.3   7.5    1.1e-13   51.5   3.6    2.1  2  YqeY      Yqey-like protein
  ------ inclusion threshold ------
       0.16   12.4   1.8       0.29   11.6   1.7    1.4  1  PIN_12    PIN domain


Domain annotation for each model (and alignments):
>> YqeY  Yqey-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   6.2e-05      0.56       2      31 ..      35      64 ..      34      67 .. 0.82
   2 !   51.5   3.6   1.2e-17   1.1e-13      15     139 ..      65     191 ..      62     196 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.2e-05
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
        YqeY  2 eklkedlkeamkakdkerlstlrllkaaik 31
                 k+++dlk+am+akd++r   + l   ai 
  KKY18119.1 35 AKIRSDLKTAMRAKDTTRFVFMALFCLAIS 64
                589*************99887777666665 PP

  == domain 2  score: 51.5 bits;  conditional E-value: 1.2e-17
                 T-HHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHGGGS--..---HHHHHHHHHHHHHHTT-.- CS
        YqeY  15 kdkerlstlrllkaaikqeevderkelsdeevlkvlakevkqRresieefekagRedlaekekaEievleeYlPe..qlseeeiealvkeaiaevga.e 110
                 +  +rl++lr + +++ ++  +++   +d +vl++l+k++   r++ ++f++a+R+dl eke+a  +v+eeY+ e   +see+ie++vk++i+ ++  +
  KKY18119.1  65 QTVNRLNVLRSVITEVSNASKTSSPIKTDLQVLALLRKKAAMSRDASKQFAEAKRDDLKEKEDAQTNVVEEYIGEvaVMSEEDIEKIVKDTIEGMKSpA 163
                 55689**************999999999*********************************************973369**************996515 PP

                 BGGGHHHHHHHHHHHHTTTS-HHHHHHHH CS
        YqeY 111 smkdmGkvmkalkpkvkGkaDgkkvsalv 139
                 s  + G+v+++l +  +G  Dgk v++ +
  KKY18119.1 164 SDLKPGQVLQKLFE-PNGVLDGKPVEKKI 191
                 67788****99976.57888888887655 PP

>> PIN_12  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.7   3.3e-05      0.29      52     131 ..      76     159 ..      69     167 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.3e-05
      PIN_12  52 kiees...kklekalks...lsklksakkklnekkkllslkeikkkieekveeslkkllekleaikvipetndevkkilerafkkk 131
                 +i e    +k+++ +k+   +  l ++k+++++  +++  +++ ++++ek e+ +++++e+++  +v   ++++++ki+++ +++ 
  KKY18119.1  76 VITEVsnaSKTSSPIKTdlqVLALLRKKAAMSRDASKQFAEAKRDDLKEK-EDAQTNVVEEYIG-EVAVMSEEDIEKIVKDTIEGM 159
                 44444333455566666778999999999999999999999999999999.666**********.999999999******999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1478  (0.0824363); expected 358.6 (0.02)
Passed bias filter:                      807  (0.0450109); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.52
# Mc/sec: 1160.26
//
Query:       KKY18120.1  [L=545]
Description: putative peroxin 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-155  518.9   0.2   1.7e-155  518.6   0.2    1.0  1  Peroxin-3  Peroxin-3


Domain annotation for each model (and alignments):
>> Peroxin-3  Peroxin-3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  518.6   0.2  9.3e-160  1.7e-155       1     469 [.       7     482 ..       7     483 .. 0.92

  Alignments for each domain:
  == domain 1  score: 518.6 bits;  conditional E-value: 9.3e-160
   Peroxin-3   1 rflrrnrrklaitagvvgagYlakqYvlkkleearerlsseriakenLrrRFeqnqeDctfTvlaLLPtlteqilealdvEeitqeLqqkkaeraarss 99 
                 r+lrrnr+++ai+agvvga+Yla+qYvl+k++earer++ ++ akenLrrRFeqnq DctfTvlaLLPtlte++++al+vE++t+eLqqkkaer+a+  
  KKY18120.1   7 RWLRRNRNRIAIGAGVVGAAYLAGQYVLNKISEARERMQLDQRAKENLRRRFEQNQRDCTFTVLALLPTLTENVVDALPVEQLTHELQQKKAERLAKLG 105
                 7**********************************************************************************************9977 PP

   Peroxin-3 100 eakseeekssaspsvededdskslseeesssssstvsasseassseesaseeseksekeseessskprksKaeLWnelkiksitRtltliYtlslLtLl 198
                 ++ s +e    + s+++++d++++++ +s++sss+v+as++ +s++++             +    prksKa+LWnelki+sitR+ltl+Yt+slLtLl
  KKY18120.1 106 QEGSPSE----PNSMSTTTDGADVASLSSMQSSSFVHASQMGESKSQD-------------SFGGPPRKSKAQLWNELKISSITRALTLLYTVSLLTLL 187
                 6655554....66677777888888888************99996543.............346789******************************** PP

   Peroxin-3 199 triQLnlLgRrsYLssvvslakeeeteeeeeeesllseatislennddeeeeqeegedeeterkYLtfSWWLLnrGWkdvaerVeaaVeevfgslslkd 297
                 triQLnlLgRr+YLssv+s+a+++++           + +isl+nn+d +  ++ g+d++t+r+YLtfSWWLLnrG++++ ++V++aV+evfg++++ +
  KKY18120.1 188 TRIQLNLLGRRNYLSSVASIASPAAS----------YSGRISLQNNEDGNDMNTFGNDFDTNRRYLTFSWWLLNRGYQEILTKVRSAVQEVFGPIPPTE 276
                 ************************94..........5789*********************************************************** PP

   Peroxin-3 298 elsleelsellkevrkkveketeeeekrsdflsillPpreeeeevLresgil.......sleeleeesssLrkLldETsdliespdfslvleslldegf 389
                  +  ++ls+l+ +vr+kve++te+e++ +++l++llPp++ee  vL esg+        +  +++ + s+Lr+LldET+dl++sp+f++++++ll+++f
  KKY18120.1 277 PIAPSRLSSLILQVRQKVEGATETERQDKRWLPFLLPPQDEEATVLLESGVItppsersASFSPSPPPSQLRRLLDETADLVDSPHFNRIHTLLLNTLF 375
                 ***************************************************999*9998556788999******************************* PP

   Peroxin-3 390 stllesleaevafkkkesasssekaeee.......eeeeeekkvkLAkllpvlsrqahailng...................vpneyleales.vreLe 461
                 + l++  + ++af++++ +++   +++           + e+++kLA++l++l++qah+i++                    ++n y++a+++ v+e+e
  KKY18120.1 376 TQLIDVQVFTQAFSETPLTQQGALRNDPsstvtvvPVTPPEPRTKLANILAILTKQAHVIGQTttsttstaaagltpsgdlsMGNAYVDAMSReVNEVE 474
                 *****99999999887755544443333789999988889***********************766666666665555555557*******999***** PP

   Peroxin-3 462 afsAvvYs 469
                 af+Av+Y+
  KKY18120.1 475 AFAAVIYA 482
                 *******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3583.79
//
Query:       KKY18121.1  [L=169]
Description: putative membrane biogenesis protein yop1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-28   97.0   8.4    4.3e-28   97.0   8.4    1.5  2  TB2_DP1_HVA22  TB2/DP1, HVA22 family


Domain annotation for each model (and alignments):
>> TB2_DP1_HVA22  TB2/DP1, HVA22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2      0.46   8.3e+03      36      37 ..      46      47 ..      36      63 .. 0.55
   2 !   97.0   8.4   2.4e-32   4.3e-28       1      77 []      68     143 ..      68     143 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.46
  TB2_DP1_HVA22 36 la 37
                   ++
     KKY18121.1 46 YF 47
                   22 PP

  == domain 2  score: 97.0 bits;  conditional E-value: 2.4e-32
  TB2_DP1_HVA22   1 PayaslkaleskeksdetkwltYWvvfafltvvesladvllswiPfYylfKllfllwlvlpqtqgatyvYekflrpl 77 
                    P y+sl+al s +k d+t+wltYWvv+af+tv+esl++ + +w+PfYy+fK++++lw++lpqt+ga++++++f++p+
     KKY18121.1  68 PGYYSLEALFSANKVDDTQWLTYWVVYAFFTVIESLINAV-YWFPFYYVFKFVLILWMALPQTGGAQIIFRSFVQPV 143
                    99**********9999*********************655.5*********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1120.76
//
Query:       KKY18122.1  [L=837]
Description: putative dna damage and replication checkpoint protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-26   92.2   0.0    4.4e-26   91.3   0.0    1.5  1  RFX_DNA_binding  RFX DNA-binding domain
  ------ inclusion threshold ------
       0.55    8.5   8.2       0.96    7.7   8.2    1.3  1  CDC45            CDC45-like protein
       0.67    9.0   7.6       0.33   10.0   2.4    2.3  2  FAM199X          Protein family FAM199X


Domain annotation for each model (and alignments):
>> RFX_DNA_binding  RFX DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.0   7.4e-30   4.4e-26       1      77 [.     106     181 ..     106     183 .. 0.96

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 7.4e-30
  RFX_DNA_binding   1 qkfalqwlnanfeeaedvsvprqevYaeYlsicsklklkplnaasFgKlirsvFpnvktrRLgtrgqskYhyvGirl 77 
                      q+fa+ wl++n+++++  sv+r++v++ Y++ c ++++ +ln+asFgKl+r++F++vktrRLg+rg+skYhyv+++l
       KKY18122.1 106 QVFAMLWLQENCQKSS-GSVRRDKVFSCYAKRCGNEAVPTLNPASFGKLVRIIFSDVKTRRLGVRGESKYHYVDLSL 181
                      689**********998.89******************************************************9975 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   8.2   0.00016      0.96     145     244 ..     657     758 ..     639     762 .. 0.47

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00016
       CDC45 145 ddeeeeeeeeedeedeeedeeeskkkrk....sksdeeeesddddersrkrrrsepsakklrrq....lkkerrkyeavlekyysqgtsygesvs..sl 233
                 +d  e+e+++edee+ ++ e+ + kk +    ++++++++++++d+r  kr+r++             + ++++++ + ++++ +q +s +++++   +
  KKY18122.1 657 QDRIEHEKKNEDEERVKAWEDYRAKKAEwnayHEQHRQRQRETQDQRGTKRKRDD--------AdtggTTRQQKRNVSPISTNGTQSASTSRPTTgnAT 747
                 1111111111111111111111111111111122222223455555555555555........023345555555666677788888888888873357 PP

       CDC45 234 mYsLaselgre 244
                  Y+Las lg+ 
  KKY18122.1 748 TYHLASPLGEL 758
                 89999999875 PP

>> FAM199X  Protein family FAM199X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.2     0.025   1.5e+02     259     295 ..      51      87 ..      26      94 .. 0.81
   2 ?   10.0   2.4   5.5e-05      0.33     181     266 ..     686     770 ..     642     777 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.025
     FAM199X 259 erirdskkrskqrklqqkalrkrqlkeqrqarkerls 295
                   i d kk+      qq+ +  ++l eq q r+ r  
  KKY18122.1  51 SEIMDGKKKRPSASTQQNEIELKRLLEQYQGRRLRDV 87 
                 46899999999999******************98755 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 5.5e-05
     FAM199X 181 rnyikehsprqrasstreswkrssyssastsgvsaasssnasmvssassstasvgssaansaanisrahsdsnlssaaerirdskk 266
                  +y ++h  rqr ++ + + kr   + a t+g + +   n s +s+  + +as++  +++ a+    a   ++l +++ ++++ k+
  KKY18122.1 686 NAYHEQHRQRQRETQDQRGTKRKR-DDADTGGTTRQQKRNVSPISTNGTQSASTSRPTTGNATTYHLASPLGELNASTSQMKNQKR 770
                 579999999999888888888865.6789***************************999999999999999999988888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1505  (0.0839422); expected 358.6 (0.02)
Passed bias filter:                      663  (0.0369792); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.50
# Mc/sec: 5045.31
//
Query:       KKY18123.1  [L=397]
Description: hypothetical protein UCRPC4_g05160 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 3335.82
//
Query:       KKY18124.1  [L=389]
Description: hypothetical protein UCRPC4_g05122 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-05   23.9   1.1    5.8e-05   23.0   1.1    1.5  1  zf-CCHC       Zinc knuckle
  ------ inclusion threshold ------
      0.013   15.4   0.6      0.035   13.9   0.6    1.7  1  zf-CCHC_6     Zinc knuckle
      0.014   15.0   3.4      0.027   14.0   3.4    1.5  1  ASD2          Apx/Shroom domain ASD2
      0.024   14.5   1.6      0.039   13.8   1.6    1.3  1  zf-CCHC_2     Zinc knuckle
      0.027   14.3   0.7      0.045   13.6   0.7    1.3  1  VirB8         VirB8 protein
      0.034   13.9   4.7      0.072   12.8   4.7    1.5  1  zf-CCHC_5     GAG-polyprotein viral zinc-finger
       0.15   12.4   0.1        2.1    8.7   0.0    2.3  2  Ribosomal_S6  Ribosomal protein S6
        1.2    9.2   3.8        1.6    8.8   1.2    2.3  2  YqzH          YqzH-like protein


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   1.1   2.6e-08   5.8e-05       2      18 .]     358     374 ..     357     374 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.6e-08
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                 kC +CGe+GH+a+ Cpk
  KKY18124.1 358 KCLRCGEIGHWAKACPK 374
                 899*************7 PP

>> zf-CCHC_6  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.6   1.6e-05     0.035       3      27 ..     358     380 ..     357     387 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.6e-05
   zf-CCHC_6   3 KCknCGAFGHtarSkrCPmkcwnga 27 
                 KC  CG +GH a  k CP ++ + +
  KKY18124.1 358 KCLRCGEIGHWA--KACPKRRYQSV 380
                 9***********..9***9987765 PP

>> ASD2  Apx/Shroom domain ASD2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   3.4   1.2e-05     0.027      47     158 ..       6     119 ..       1     131 [. 0.71

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.2e-05
        ASD2  47 eeaekkkkeeeekkeeeekseasslesssayystsaakaelltklkdeteleekdeeeek.seeeedldlkek.keeLieslskklevLkeeqeallee 143
                 ++++++++++++++e+ e+s+++s +++++   t +++++ +t  +d +++ + ++++++ + e+ + ++++k k+e +e l+++l  L    +  ++ 
  KKY18124.1   6 RNHTESTNNQNNNDERPESSSSDSEDEQPERPRTLSPESRRRTPSDDLESVGHDSQTDSDqEFEQLKREVAKKrKKEELEDLKRELAGLPPLERPWATG 104
                 44444555666666677788889999999999999999999985444444433333333323344445665442677789******************* PP

        ASD2 144 ikanealgeevealv 158
                 +ka+++ g+++ea +
  KKY18124.1 105 QKAHKRAGSTLEADL 119
                 ***********9975 PP

>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.6   1.8e-05     0.039       5      21 .]     358     374 ..     358     374 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.8e-05
   zf-CCHC_2   5 vChiCgkkGHyIqdCPt 21 
                 +C +Cg  GH+ + CP+
  KKY18124.1 358 KCLRCGEIGHWAKACPK 374
                 7***************6 PP

>> VirB8  VirB8 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.7     2e-05     0.045     103     196 ..     171     256 ..     146     261 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2e-05
                 HHHHHHTB-HHHHHHHHHHHSTT-TTSHHHHTTTSEEE.EEEEEEEEEEETTEEEEEEEEEE.E.ETTS--EEEEEEEEEEEE...E-S---HHH CS
       VirB8 103 ydkvyllstgsaakelneyarsnnensPfaqlgketelveveiksvvlaspntaqvrfkett.rredgtlaktkrwtatltfryevkqaptteee 196
                 ++ + + + ++a++++ ++++ +    P + ++  +++ + +i sv+ + ++ aqv  k ++ r++ g+     + +a lt+ ++ +q ++ e  
  KKY18124.1 171 IKYAASRMEDKARDAWHAHIQTH---TPPKSWQEFKQVLRYSIYSVIDPANRIAQVTMKLKEaRKRPGQ-----DAQAALTYLRT-IQRDMPELS 256
                 677888899**********8866...8999999988888*********************994444444.....68999999544.577776655 PP

>> zf-CCHC_5  GAG-polyprotein viral zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   4.7   3.2e-05     0.072       2      18 ..     356     372 ..     355     376 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.2e-05
                 --B-TTT-SSBS-TTT- CS
   zf-CCHC_5   2 pglCpRCkkgkHwardC 18 
                 p+ C+RC+   Hwa+ C
  KKY18124.1 356 PNKCLRCGEIGHWAKAC 372
                 89*************** PP

>> Ribosomal_S6  Ribosomal protein S6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.25   5.7e+02      51      79 ..     179     208 ..     165     214 .. 0.82
   2 ?    8.7   0.0   0.00095       2.1      42      81 ..     295     334 ..     283     336 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.25
                   TTE.EEEEEEEEEEEESCCHHHHHHHHHHC CS
  Ribosomal_S6  51 kkk.teGyyvlmnfdaspevikelertlrl 79 
                   ++k +++ +  ++ +++p+  +e+++ lr 
    KKY18124.1 179 EDKaRDAWHAHIQTHTPPKSWQEFKQVLRY 208
                   44448999999999**********999986 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00095
                   EEEEEEEEETTEEEEEEEEEEEEESCCHHHHHHHHHHCST CS
  Ribosomal_S6  42 GkrkLaypikkkteGyyvlmnfdaspevikelertlrlde 81 
                     r+L y+ik k++G   + + ++++++ ++l+r  ++ +
    KKY18124.1 295 EVRRLEYQIKAKNRGRAGVARTTTNSSTRENLRRPTKKRP 334
                   579******************************9988876 PP

>> YqzH  YqzH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.2   0.00073       1.6      18      50 ..      57      87 ..      51      90 .. 0.83
   2 ?   -0.8   0.1      0.75   1.7e+03      14      50 ..     149     185 ..     146     191 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00073
        YqzH 18 grdtelmplseeeqkeLveriqekkkeqedeDl 50
                g+d ++   s++e+++L++++++k+k++e eDl
  KKY18124.1 57 GHDSQT--DSDQEFEQLKREVAKKRKKEELEDL 87
                666444..499******************9998 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.75
        YqzH  14 lrqYgrdtelmplseeeqkeLveriqekkkeqedeDl 50 
                 l q+ +  e+  +s++   eL  + ++ + e++  D 
  KKY18124.1 149 LDQFTKAWEIWQISHQASDELLIKYAASRMEDKARDA 185
                 7899999999999999999998888888888888774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1446  (0.0806515); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 2560.29
//
Query:       KKY18125.1  [L=437]
Description: hypothetical protein UCRPC4_g05123 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-07   30.9   0.3     0.0011   19.9   0.1    2.3  2  AltA1     Alternaria alternata allergen 1


Domain annotation for each model (and alignments):
>> AltA1  Alternaria alternata allergen 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   5.9e-08    0.0011       1      99 [.      36     129 ..      36     144 .. 0.79
   2 !    9.1   0.0   0.00013       2.3       1      67 [.     225     286 ..     225     341 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 5.9e-08
       AltA1   1 itdFdyhafttpah.nsigsvsFnlsntaledttlsCsasssqlsdffygd.tdvykCkegeskfrFslnresgelainqelacsdekgftgegsv..l 95 
                 i++F +  ft +a+ + ++s+sF   n+++  +t+ C+ + ++ s   + d +++y C++++ ++++      g lai+   + +d+   t  g+v  +
  KKY18125.1  36 ISGFRA--FTATAGvDGVSSISFAFPNSTT--STTPCTRKLTNGSGRSVADvENFYPCEDSSVSYKW----GGGWLAITTVSS-HDGLMSTKFGNVtlP 125
                 778855..********************85..58******99999966666588****888888888....889999987666.555566666666657 PP

       AltA1  96 tkCk 99 
                 ++C 
  KKY18125.1 126 QQCY 129
                 7885 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00013
       AltA1   1 itdFdyhafttpahnsigsvsFnlsntaledttlsCsasssqlsdffygdtdvykCkegeskfrFsl 67 
                 it+F +h+f+  ah +++ +sF++s   l   t++Csas +  +     +  +  C+ ++++f+++ 
  KKY18125.1 225 ITNFISHNFNPIAH-ATSDISFDMSVLGL---TTHCSASRALGQGS-AATGGSHPCDFSDASFEWTD 286
                 89998888999997.7899*****99977...79****88554543.33334589**9999**9933 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 2657.55
//
Query:       KKY18126.1  [L=456]
Description: hypothetical protein UCRPC4_g05124 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.056   13.4   5.4      0.094   12.6   5.4    1.3  1  FAM217          FAM217 family
       0.15   11.6   0.0       0.28   10.6   0.0    1.4  1  LuxQ-periplasm  LuxQ, periplasmic
        1.1    8.0   5.3        1.6    7.4   5.3    1.2  1  Presenilin      Presenilin
        5.9    6.7   8.7         23    4.9   0.1    4.4  4  LRR_8           Leucine rich repeat


Domain annotation for each model (and alignments):
>> FAM217  FAM217 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   5.4   2.1e-05     0.094     120     221 ..     281     380 ..     258     392 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.1e-05
      FAM217 120 pgtlaalksPgsskllqsalpskklssqeglsksqvsrkknleceeahpscyayetssrlsellessrlckqkqsssesrvrseekkkkssksqklksq 218
                 ++ + +l++Pgss   + +   ++  ++++++   ++r++ l++eea +     +++ r + l+  +++  ++q+ +e +++++e+++++s+ + +k +
  KKY18126.1 281 VSHTERLSRPGSSNSEADQT--APQRKSARIPIVAAQRMETLRQEEAIAAAEEEKAHLRRQALAAAKKVAVERQKEEEREAKAKERRQRHSRASTMKAE 377
                 344689******99877555..3345777777888889999*99999999999999*9*99999999*************************9999776 PP

      FAM217 219 ssd 221
                 + +
  KKY18126.1 378 EDE 380
                 654 PP

>> LuxQ-periplasm  LuxQ, periplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   6.3e-05      0.28      45      81 ..     167     202 ..     159     224 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.3e-05
                     HHHHHTT-CCCHHHHHHHHHHCCCCCS-SEEEEEETT CS
  LuxQ-periplasm  45 aealssgdeealdafflsvdqkepsntpdlrfissqe 81 
                      ++l+s d ea+d ff+s++++ p n pdlrf+s + 
      KKY18126.1 167 LNQLRSWDMEAADGFFQSLEDAAP-NLPDLRFLSLKA 202
                     5789999************99887.89******9765 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   5.3   0.00036       1.6     207     310 ..     273     377 ..     263     409 .. 0.42

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00036
  Presenilin 207 neeifpaLiYsatvvvlaaeek..kaevaeseeeeeaekkkeeasesskeeeseeesseksaqsse.......seeeseeesseaessaeesseekese 296
                   +ifp L+  ++      +++  ++++a+++++++    +++  e+ ++ee+   ++e++a+ ++       +         ++e+++ee++e k++e
  KKY18126.1 273 TTPIFPGLVSHTERLSRPGSSNseADQTAPQRKSARIPIVAAQRMETLRQEEAIAAAEEEKAHLRRqalaaakK--------VAVERQKEEEREAKAKE 363
                 57999999999888887655443222222222222222222222222222222222222222221112222210........11121111111111111 PP

  Presenilin 297 essesseeeeeeee 310
                 +++++s++++ ++e
  KKY18126.1 364 RRQRHSRASTMKAE 377
                 11111111111111 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1    0.0051        23      18      33 ..       7      22 ..       6      25 .. 0.80
   2 ?    3.0   0.0     0.019        87      20      50 ..      42      70 ..      36      81 .. 0.69
   3 ?    0.6   0.2      0.11   4.8e+02       7      33 ..      77     103 ..      70     126 .. 0.69
   4 ?   -1.1   0.0      0.36   1.6e+03      43      56 ..     187     200 ..     182     202 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0051
                TTSSTT-TT--EEE-- CS
       LRR_8 18 deaFkglsnLkvLdLs 33
                 +aF++l++L+ L+L 
  KKY18126.1  7 RQAFQRLESLMLLNLA 22
                5789999999999985 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.019
                SSTT-TT--EEE--SS---GGGGGGGTT--S CS
       LRR_8 20 aFkglsnLkvLdLsnNllttlspgafsgLps 50
                a ++l+n + L+  n  +t+++++ f++Lp+
  KKY18126.1 42 AISKLPNIRRLSFQN--CTVVNERLFAHLPQ 70
                556666666666654..68888888888885 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.11
                 E-TTS--SEE-TTSSTT-TT--EEE-- CS
       LRR_8   7 dLsnNrltslddeaFkglsnLkvLdLs 33 
                 ++++ +lts++ +aF + +++  ++L+
  KKY18126.1  77 VVDCVSLTSMELSAFLRDKGMSLINLR 103
                 345556888888888886666666654 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.36
                 GGGTT--S-.EEE- CS
       LRR_8  43 gafsgLpsLrsLdL 56 
                 +a  +Lp Lr+L L
  KKY18126.1 187 DAAPNLPDLRFLSL 200
                 45556777888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1636  (0.0912488); expected 358.6 (0.02)
Passed bias filter:                      624  (0.0348039); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.37s 00:00:01.06 Elapsed: 00:00:00.51
# Mc/sec: 2703.42
//
Query:       KKY18127.1  [L=682]
Description: putative ars binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-73  244.2   0.0    1.2e-72  243.6   0.0    1.3  1  Abp2      ARS binding protein 2
  ------ inclusion threshold ------
      0.019   15.7   0.0      0.052   14.2   0.0    1.7  1  ARID      ARID/BRIGHT DNA binding domain


Domain annotation for each model (and alignments):
>> Abp2  ARS binding protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.6   0.0   1.3e-76   1.2e-72       1     169 [.      13     179 ..      13     181 .. 0.98

  Alignments for each domain:
  == domain 1  score: 243.6 bits;  conditional E-value: 1.3e-76
        Abp2   1 lPsrdvtdetiedayvafilycnpavpldtdtselrkafrapPksdgksfsiftlfelikkleekeiktWaelalelGveppdaekeqstqkvqqyavr 99 
                 lPsr+v+ ++i dayvafily+np++p +t+tselrk+f  pP+ dgk+f++f+l+eli+++++ e+ktW++la+elGv+pp+   eqs+qk+qqyavr
  KKY18127.1  13 LPSRSVSRDSIVDAYVAFILYANPSIPISTNTSELRKIFGLPPRNDGKTFDTFKLWELIQRMDKGELKTWVNLATELGVDPPS--TEQSSQKIQQYAVR 109
                 8********************************************************************************98..689*********** PP

        Abp2 100 lkrWmramhvdaffeylldkpheyyteipeeseelaeevrdgvaleedlalrallPeikPkrGrkkaede 169
                 lkrWm+amh+daff+yll+k+h y+++ip+ ++e + e rd v+ eedla+rallP++kPkrGrkka+ +
  KKY18127.1 110 LKRWMHAMHIDAFFKYLLGKDHIYFNRIPSITNEGTYEPRDDVPPEEDLAIRALLPTWKPKRGRKKASGK 179
                 ******************************************************************9766 PP

>> ARID  ARID/BRIGHT DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   5.8e-06     0.052      20      80 ..      52     105 ..      40     113 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.8e-06
                 SS----SSSS-STTHHHHHHTTT.SSHHHHTT.CHHHHHHHHHTS-..-.......HHHHHH CS
        ARID  20 kkiPviggkevdlykLyraVikr.GGfrkvtqknkWeevaqklglpredpeasesvaqalks 80 
                 + +P  +gk++d +kL+++++++  G       + W ++a++lg+++ +   +e+ +q++++
  KKY18127.1  52 GLPPRNDGKTFDTFKLWELIQRMdKGE-----LKTWVNLATELGVDPPS---TEQSSQKIQQ 105
                 4468889**************753343.....345*********98765...3344555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 4335.94
//
Query:       KKY18128.1  [L=707]
Description: putative amino-acid n-acetyltransferase subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.7e-20   70.3   0.3    2.5e-19   69.0   0.3    1.7  1  ATP-synt_Eps  Mitochondrial ATP synthase epsilon chain
    3.7e-19   68.8   0.3    4.1e-16   58.9   0.1    2.5  2  Mak10         Mak10 subunit, NatC N(alpha)-terminal acetyltra


Domain annotation for each model (and alignments):
>> ATP-synt_Eps  Mitochondrial ATP synthase epsilon chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.3   2.8e-23   2.5e-19       3      47 ..       5      49 ..       3      50 .. 0.98

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 2.8e-23
                  TTTTS--HHHHHHHHHHHCCHSS-TTT--CCCCCS----EEEE-- CS
  ATP-synt_Eps  3 WRaaglsYnkYsniaAravRraLKeelraaAekreetelkytkwe 47
                  W+aagl+Yn+Y+++a+ravRr+LKe  r +Ae+r+e++l+++kwe
    KKY18128.1  5 WKAAGLTYNRYLAVASRAVRRSLKEGPRLQAERRGEMDLRFAKWE 49
                  ********************************************8 PP

>> Mak10  Mak10 subunit, NatC N(alpha)-terminal acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.1   4.6e-20   4.1e-16       1      52 [.      65     115 ..      65     115 .. 0.96
   2 !    9.4   0.0   7.7e-05      0.69     144     166 ..     115     137 ..     113     139 .. 0.91

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 4.6e-20
       Mak10   1 egqlvkdesFtLfeavsAleimdpkmDsgliapeleeeeedfdvsapllpee 52 
                 +gql+kde+FtLfeav+Alei+d+kmDsg+++p+ e++++++d+ ++llpee
  KKY18128.1  65 TGQLIKDEYFTLFEAVGALEIGDAKMDSGYLEPG-ETMDDEYDILRELLPEE 115
                 69********************************.889***********997 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 7.7e-05
       Mak10 144 eeEDfvtnkyglslleeieveev 166
                 eeEDf++++y++ ll+++ ++e+
  KKY18128.1 115 EEEDFSSQNYNRPLLHKFATSEL 137
                 9****************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.49
# Mc/sec: 4377.45
//
Query:       KKY18129.1  [L=708]
Description: putative transposase-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-16   58.5   0.0    9.4e-16   57.4   0.0    1.6  1  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
  ------ inclusion threshold ------
      0.014   15.4   1.0      0.036   14.1   1.0    1.8  1  zf-BED         BED zinc finger


Domain annotation for each model (and alignments):
>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0     1e-19   9.4e-16       1      85 [.     609     692 ..     609     693 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 1e-19
                    HHHHHHT------TT....--HHHHHHHTTTTSHHHHHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HHHHHHHHHHHHH CS
  Dimer_Tnp_hAT   1 eldkyleelpvlrrkeksefdvlewwkensskyPnlsklardvLsipvssaasErsFstlgkvllesrnsleplnveallcieqw 85 
                    e d+yl+elp l+     +f+v++wwk+n +++P+ls  a dvLs+p++  ++Er   ++g+ + +  +  ++++vea+ c+++w
     KKY18129.1 609 EFDSYLSELPELSTP-GATFNVIQWWKTNATRFPTLSAYAFDVLSVPAMGRECERLLKGSGRAIEQGCVMNDDHIVEACECLRNW 692
                    689*********976.499*****************************************************************9 PP

>> zf-BED  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.0   4.1e-06     0.036      12      44 .]      79     113 ..      65     113 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.1e-06
                 GGSS--EETTT..TEE----SSTHHHHHHHHHS-H CS
      zf-BED  12 lkeqkavCryC..gkilsrgggttnLkrHLrrkHp 44 
                   ++ ++C  C  + i+s  ++t+  ++HL+rkH+
  KKY18129.1  79 SNRKHWKCGLCktMTIISIQTTTHPAIQHLQRKHR 113
                 56899******444677887**************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 4547.54
//
Query:       KKY18130.1  [L=334]
Description: putative ribosome biogenesis protein brx1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-31  110.6   0.0    1.3e-31  110.2   0.0    1.1  1  Brix      Brix domain


Domain annotation for each model (and alignments):
>> Brix  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.0   7.2e-36   1.3e-31       1     192 [.      59     262 ..      59     263 .. 0.79

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 7.2e-36
                 BTT--HHHHHHHHHHHHHCTTSEEEEEE...ECT-TTTHHHHHHH-HHHHHHHHHCTC.SEEEEEE..S..........STTEEEEEEEEECECTGGGS CS
        Brix   1 grktssrlrqllkdlrslmkphtasflk...rnsnklkdlvelagvthlellsekndc.slfvfelskk..........rPngptlefkvenyslmkdl 85 
                 +r++s+r+r+ll+dl +l+ p+t + +k   + sn           + l  l+e ++c ++f++e++k+           Pngpt++f+v+n+++m +l
  KKY18130.1  59 SRGVSHRHRHLLNDLSALL-PNTYKDTKldtKSSNNYN--------SALNGLAELHSCnYVFFLEARKHgqdlylwlakAPNGPTIKFSVNNVHTMGEL 148
                 6899***************.889998886532333333........3455588888887788888877788888888888******************* PP

                 TTTSTS-TT---EEEEES.......HHH.......HHHHHHHHHHH..SEEEG..-B-GG-SEEEEEEES.CCTTTECEEEEEEEEEEE..STTTTECT CS
        Brix  86 kkakktefgsrPllvfng......kenf.......kllksllqdlFrvpkislkspklsglrrvvlftaaenqetdktisfRhYaiklkksgkklpnle 171
                    +++++g r ++ f++                  l+k++l  +F vp+  ++ +k+ +++r++ +   +    + +i++R+Y+i+   ++k+++  e
  KKY18130.1 149 GFGGNCLKGGRGIVAFDKsfeqgsA--GgvgheyrGLVKEMLSGVFCVPAKGVRGMKP-FIDRIIGVFELD----N-KIWIRVYEIRETDKDKATQVAE 239
                 9999*************76665550..045555568**********************.*******99443....4.8********8533333333222 PP

                 ..T....EEEEEEESEEEEEEEE CS
        Brix 172 kek..kerveLeEiGPrfdLklr 192
                 + +   + ++L+EiGPrf+L+++
  KKY18130.1 240 DFEkgATDISLVEIGPRFVLTPI 262
                 2224699*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.50
# Mc/sec: 1993.05
//
Query:       KKY18131.1  [L=603]
Description: putative capsular associated protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-09   35.7   3.0    1.2e-05   24.4   0.0    3.6  3  Glyco_transf_90  Glycosyl transferase family 90
  ------ inclusion threshold ------
       0.19   11.4   0.1       0.92    9.2   0.0    2.1  3  CENP-P           CENP-A-nucleosome distal (CAD) centromere su


Domain annotation for each model (and alignments):
>> Glyco_transf_90  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.0    0.0023        20       8      95 ..      71     154 ..      68     167 .. 0.72
   2 !    5.4   0.2   0.00079       7.1     151     171 ..     325     345 ..     313     393 .. 0.86
   3 !   24.4   0.0   1.3e-09   1.2e-05     204     322 ..     458     586 ..     437     592 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0023
  Glyco_transf_90   8 dyfrvieeDLkpwretgitreaverakrkalfrlviingrvyvekykksvqtrdvftiwgilqLlrkypgklpDlelmfncdDrPvvk 95 
                      ++f +i +DL+p+         + ++ ++    ++i +g+   +   +  ++   + + +  ++++++ + lpD++l + ++D P v 
       KKY18131.1  71 SFFDQIYDDLEPFWG--ANPHDLREFAKQWPYVISIRHGKPILRIQTEQPNFG-NYWLFIWRDMIQEM-PPLPDVDLSMWIGDEPRVM 154
                      588889999999875..556666667677788888888885444434444444.34455557899999.67**************996 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.00079
  Glyco_transf_90 151 kkvkweerepyaywkGnpsva 171
                      +  +w+++++ a w+G+ +  
       KKY18131.1 325 TTIPWKNKKAAAVWRGSATGG 345
                      5789************98755 PP

  == domain 3  score: 24.4 bits;  conditional E-value: 1.3e-09
  Glyco_transf_90 204 gvkessledqckhkYkiyieGvaasvsekyilacdslvllvkpeyydffsreLkplehYvPikskdk..lrdlkeavdw.........gnahde 286
                       v + ++++ ++hkY   ++G++ s +++  l   s  ++  + + ++    L+p++h++P++++ +     +++ v +         ++ hd+
       KKY18131.1 458 IVPKLNMSEILHHKYLPDVDGQSSSGRFRGFLESLSAPIK-ATIFTEWHDARLVPWKHFIPMSNEFQewWGLMEYFVGYkgnstnettVKGHDA 550
                      566789999***********************99998765.689*******************9644445556777777433333222456888 PP

  Glyco_transf_90 287 kaqeiaeegseFireeLkmddvydYmfhLlteYakl 322
                        + i++ gse+ ++  + +d++ Y+ +++ eYa++
       KKY18131.1 551 VGEMIGRDGSEWTHRVERKEDMMLYFYRVILEYARI 586
                      8899***********99*****************86 PP

>> CENP-P  CENP-A-nucleosome distal (CAD) centromere subunit, CENP-P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.41   3.7e+03      62      80 ..     154     172 ..     140     187 .. 0.65
   2 ?   -2.9   0.0      0.52   4.7e+03      70      85 ..     500     515 ..     497     518 .. 0.90
   3 ?    9.2   0.0    0.0001      0.92      47      80 ..     558     592 ..     550     598 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.41
      CENP-P  62 llffrslrsfaewcedrrr 80 
                 +l f+ +  +  + e++rr
  KKY18131.1 154 MLAFQHVTEYMTRAEQQRR 172
                 5555555555555555443 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.52
      CENP-P  70 sfaewcedrrrtfkhf 85 
                  f+ew + r   +khf
  KKY18131.1 500 IFTEWHDARLVPWKHF 515
                 79*************9 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0001
      CENP-P  47 elskfvsraeekkdlll.ffrslrsfaewcedrrr 80 
                 + s++  r+e k+d++l f+r +  +a  c drr 
  KKY18131.1 558 DGSEWTHRVERKEDMMLyFYRVILEYARICADRRV 592
                 5689999******98772668999*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 3646.81
//
Query:       KKY18132.1  [L=176]
Description: putative reverse [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1272.75
//
Query:       KKY18133.1  [L=601]
Description: putative benomyl methotrexate resistance protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-27   95.2  37.0    3.7e-27   95.2  37.0    1.8  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2  37.0   2.1e-31   3.7e-27       3     340 ..     159     536 ..     157     549 .. 0.76
   2 ?    0.3   0.9     0.015   2.7e+02     221     273 ..     544     594 ..     525     599 .. 0.70

  Alignments for each domain:
  == domain 1  score: 95.2 bits;  conditional E-value: 2.1e-31
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdr..fGrrrvlllglllfalglllll.fasslwlllvlrvlqGlg 98 
                 l ++ ++++++i++p+    ++e++g+s ++++l l+ly lg++ + l++++ls+   +Gr   +l+++++f++  ++++ ++ ++  llvlr+lqG++
  KKY18133.1 159 LYTLAVYMGSAIYTPSEA-GVMEAFGVSTTVAHLGLALYVLGYGTGPLLWSPLSEIpaIGRNIPYLFSFAIFVIL-CVPTaLVDNIAGLLVLRFLQGFF 255
                 667899************.9***********************************6669****************.555536699999*********** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee......... 188
                 ++  +++g+a + d+++  + +  +  +++++ +G+ lgpl++g+ + + +Wr++ + +  +s  +f+ +++llpe+  ++   + +++          
  KKY18133.1 256 GSPCLATGGASLGDITSLIKLSYFLTGWAGFATAGPSLGPLISGFSVPAKNWRWSLWEMLWLSGPVFISMFFLLPETSGPNILLRRAQRIrkltgnpnf 354
                 *******************************************************99999999999997778898888888888888888988888777 PP

       MFS_1 189 .......kgtgpaplvp.......awkallkdpvl..w..illialllfffgfsg.......lltllplylqevlgls.glllaglllallalvgail. 260
                        +                a++al+++  l  +  ++l++ +++++++ +       ++  +p+  q+ +g++ g  +++++l ++ +v++ + 
  KKY18133.1 355 kaqseidQ--------RnlsaksiAYEALVRPWILnaLdpAILFTTVYVMIVYGYleqiyysFFEVFPIVYQQGYGMTiG-EMGLVFLVIFVAVAISIp 444
                 77765432........0222244557777777766442554444444444455556777666888888867*******75.444444444444444444 PP

       MFS_1 261 .......allagrlsdr.......lgrrrrlllallllllaalglallavtssavllllvlvl.iGf.glgfv..fpsllalasdlappeeagtasgl 340
                              +            ++r l+ al++++l  +gl+++++t  ++++++v  + iG+ ++g++    sl+ ++   +p ++a+++++ 
  KKY18133.1 445 tyflylhY-----VFEPsvmkkglSDPERLLVPALVSCALPPIGLFMFGWTGRPTIHWIVPTVgIGIyTVGVFvlLQSLFIYIPLIYP-QYAASLFAG 536
                 45333332.....33225544476666************************9999999944444555444443335555555665555.555555555 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.015
       MFS_1 221 fgfsglltllplylqevlgls..glllaglllallalvgailallagrlsdrlgr 273
                 f+  ++l+  pl+  + lg +  + ll+g  la++++ g+++  + g  +++ +r
  KKY18133.1 544 FAAGAILYADPLF--KNLGVGkgSSLLGG--LAAGCMTGVFILYFYGEALRKRSR 594
                 4555577777776..44444454338899..999999999999999988888554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.48
# Mc/sec: 3751.50
//
Query:       KKY18134.1  [L=786]
Description: putative mfs monosaccharide [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-99  333.4  14.5    2.9e-99  333.0  14.5    1.1  1  Sugar_tr  Sugar (and other) transporter
    1.6e-28   99.6  54.6    5.7e-26   91.3  24.6    2.3  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.0  14.5  3.2e-103   2.9e-99       3     452 .]     164     603 ..     162     603 .. 0.94

  Alignments for each domain:
  == domain 1  score: 333.0 bits;  conditional E-value: 3.2e-103
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkns 101
                 ++++lg +lfgYd gv+++++t + f   f++    +        +g +v+i+ vGa+i sl +g +gd++GR+ ++l ++++f+ g++lq +a+    
  KKY18134.1 164 IFVSLGVFLFGYDQGVMSGIITGPYFKDYFNQPGVGE--------IGTMVAILEVGAFIASLCVGRIGDVIGRRRTILYGSIIFFFGGALQSFAN---G 251
                 6789999******************777766665553........699***********************************************...9 PP

                 -TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHH CS
    Sugar_tr 102 vevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylve 200
                 + ++++gR+++G+gvG  s++vP+++sEi+p++ Rg ++ l  ++ ++G   + + +++ ++++++  wr++l lq+v+  ll ++ l + ESPr+l+ 
  KKY18134.1 252 MPMMMIGRIIAGLGVGSLSTIVPVFQSEISPPHNRGLMGCLEFTGNIAGYAASVWADYFCSYIKSDYSWRLPLLLQCVMGGLLGLGSLIICESPRWLLD 350
                 9************************************************************************************************** PP

                 TT-HHHHHHHHHHHHHC.HHHHHHHHHHHHHHHHHHH.........HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HHH CS
    Sugar_tr 201 kgkeeeakevlaklrge.edadrelaeekdsleaeqeee....kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks..llv 292
                 ++++ee   v+a+l g+ +  ++++ +e++++++++  +    + s++e++++  + +r++i++  q++ ql+Gin+i yy+p +fe++g      +l+
  KKY18134.1 351 NDHDEEGIIVIANLYGKgDIHNDKARQEYREIKMNVLLQrqegERSYSEMFKR--YYKRVFIAMSAQALAQLNGINVISYYAPLVFESAGWVGRdaILM 447
                 *************8887677778888888888888776666779999999999..99*********************************998889*** PP

                 HHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH...HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHH CS
    Sugar_tr 293 tiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg.ivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalai 390
                 t+i  ++  ++t+  ++lvdr+GRR++ll Ga+ m + + +++  +++ ++        ++++f++++ a f+++wgp+pw++ +E+ p+s+R+k++++
  KKY18134.1 448 TGINAFTYLASTVPPWWLVDRWGRRPILLSGAIAMVVSLSLISyFIFIDIKY----TPTLVVIFVMIYNASFGASWGPIPWLYPPEILPLSIRAKGASL 542
                 ******************************************9545555555....589**************************************** PP

                 HHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 391 avavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 ++a+nw +n l++ ++pi+++aig +  +l+ a++++++++ v+f +pet+++ le++++lf
  KKY18134.1 543 STASNWAFNWLVGEMTPILQKAIG-WRLYLLHAFFCAVSFVLVYFLYPETANVRLEDMNALF 603
                 ************************.*********************************9987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3  24.6   6.4e-30   5.7e-26       2     332 ..     167     534 ..     166     555 .. 0.81
   2 !   23.1  22.0   3.4e-09     3e-05      11     176 ..     422     592 ..     409     598 .. 0.80

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 6.4e-30
       MFS_1   2 llaaflsalarsilgpalpl.alaedlg.ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlg 98 
                 +l++fl +++ ++ + +++  + ++ ++   + eig+++++  +ga++asl +Gr++d +Grrr++l g ++f++g++l +fa+++++++++r+++Glg
  KKY18134.1 167 SLGVFLFGYDQGVMSGIITGpYFKDYFNqPGVGEIGTMVAILEVGAFIASLCVGRIGDVIGRRRTILYGSIIFFFGGALQSFANGMPMMMIGRIIAGLG 265
                 7899***********999999*******777888******************************************6666699**************** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpeepperkrkspkeee..... 188
                  g+l +++ ++ ++++p+ +rg+ +g+l  + +++   + + + +++s++     Wr++ ++ ++++ l+++  + l+ +e p+   +++ +ee     
  KKY18134.1 266 VGSLSTIVPVFQSEISPPHNRGL-MGCLEFTGNIAGYAASVWADYFCSYIKsdysWRLPLLLQCVMGGLLGL--GSLIICESPRWLLDNDHDEEgiivi 361
                 ******************77775.6788888888888888888999988888999***************99..2555555555555555555579999 PP

       MFS_1 189 ............................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgai 259
                                              + g+++ ++ +k   k+ ++  + + +l    g++ ++++ pl   e  g+ g   a l+ ++ a+  ++
  KKY18134.1 362 anlygkgdihndkarqeyreikmnvllqRQEGERSYSEMFKRYYKRVFIA-MSAQALAQLNGINVISYYAPLV-FESAGWVG-RDAILMTGINAFTYLA 457
                 999**999999999999999999999888888888888999999999774.44444444557888*******7.*******7.8888888888888888 PP

       MFS_1 260 lallagrlsdrlgrrrrlllallllllaalglallavt...ssavllllvlvliGfglgfv.fpsllalasdlappe 332
                 + +   +l+dr+grr++ll + +++++++ ++ ++ ++    +++l++++++++   +g    p+ + +  + +p +
  KKY18134.1 458 STVPPWWLVDRWGRRPILLSGAIAMVVSLSLISYFIFIdikYTPTLVVIFVMIYNASFGASwGPIPWLYPPEILPLS 534
                 899999999*****999999999999999999999999775455555555555666555552555555555555555 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 3.4e-09
       MFS_1  11 arsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa......sslwlllvlrvlqGlgagal 102
                 ++++++  +p ++ e+ g+ +  + l++++ a++++++++p  +l+dr+Grr++ll g+++++++l l++ f+      ++  +++++ +  + ++++ 
  KKY18134.1 422 GINVISYYAP-LVFESAGWVGRDAILMTGINAFTYLASTVPPWWLVDRWGRRPILLSGAIAMVVSLSLISyFIfidikyTPTLVVIFVMIYNASFGASW 519
                 3445555566.8889999***********************************************4444456444766433334555555555555777 PP

       MFS_1 103 fpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeep 176
                  p+   +  ++ p + r+++ +l +a++ +   l     ++l  ++gWr +++++a++++++fvl+++l+pe++
  KKY18134.1 520 GPIPWLYPPEILPLSIRAKGASLSTASNWAFNWLVGEMTPILQKAIGWR-LYLLHAFFCAVSFVLVYFLYPETA 592
                 78888999******************888888888888899999999**.89*************999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.52
# Mc/sec: 4512.67
//
Query:       KKY18135.1  [L=1256]
Description: putative tpr domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.2e-147  476.4   6.5    7.2e-13   48.0   0.0   12.7 12  TPR_10       Tetratricopeptide repeat
   1.8e-132  431.9  21.3    3.9e-16   59.1   0.0   10.4 11  TPR_12       Tetratricopeptide repeat
    6.5e-55  179.2  16.2    3.3e-05   23.6   0.0   13.3 12  TPR_7        Tetratricopeptide repeat
    6.7e-29   98.5   4.7     0.0084   15.9   0.0   12.5 12  TPR_1        Tetratricopeptide repeat
    1.9e-27   93.1  15.5      0.012   15.6   0.0   12.7 12  TPR_2        Tetratricopeptide repeat
    3.3e-24   85.2   0.0       0.04   14.4   0.0   10.9 11  TPR_19       Tetratricopeptide repeat
    3.4e-24   85.2   2.4      0.018   15.7   0.0   11.4 11  TPR_16       Tetratricopeptide repeat
    1.1e-23   84.2  29.1    2.7e-09   36.9   3.1    3.9  4  TPR_MalT     MalT-like TPR region
    1.3e-23   81.1   1.4        1.8    9.4   0.0   11.7 11  TPR_4        Tetratricopeptide repeat
    3.7e-18   64.1   4.3       0.25   11.6   0.0   11.6 12  TPR_8        Tetratricopeptide repeat
    1.1e-17   63.2  10.1        4.5    8.3   0.0   12.5 12  TPR_14       Tetratricopeptide repeat
    1.2e-15   57.8   0.0    6.1e-15   55.6   0.0    2.2  2  SIR2_2       SIR2-like domain
    1.6e-10   40.6   0.0    3.9e-10   39.3   0.0    1.6  1  NB-ARC       NB-ARC domain
    7.6e-09   35.4   0.0         29    4.8   0.0    9.7 10  TPR_3        Tetratricopeptide repeat
    8.4e-08   32.1  12.7        9.5    6.1   0.0    7.9  8  PaRep2a      PaRep2a protein
    8.7e-08   32.4   0.3         24    5.3   0.0    8.0 10  TetR_C_20    Tetracyclin repressor-like, C-terminal domain
    9.4e-08   32.0  11.9       0.61   10.2   0.1    6.8  6  Trans_reg_C  Transcriptional regulatory protein, C terminal
      3e-07   30.2   5.6        8.4    6.9   0.0    9.7 10  PPR          PPR repeat
    9.1e-07   29.4   0.3    1.9e-05   25.1   0.2    3.2  1  AAA_16       AAA ATPase domain
      8e-06   25.9  11.9        6.9    7.3   0.0    8.7 10  TPR_17       Tetratricopeptide repeat
      1e-05   25.7   1.3         21    5.4   0.0    6.9  6  ANAPC3       Anaphase-promoting complex, cyclosome, subunit 3
    4.4e-05   23.8  12.9       0.73   10.6   0.1    8.5  6  TPR_6        Tetratricopeptide repeat
    0.00083   19.3   0.0      0.003   17.5   0.0    2.0  1  NACHT        NACHT domain
     0.0026   17.7   0.0      0.035   14.0   0.0    2.8  2  ATPase_2     ATPase domain predominantly from Archaea
  ------ inclusion threshold ------
      0.013   15.8   0.0      0.047   14.0   0.0    2.0  1  AAA_22       AAA domain
        1.1    9.8  21.9         58    4.3   0.0    8.0  7  PepSY_like   Putative beta-lactamase-inhibitor-like, PepSY-li
        1.2    8.9   6.3         50    3.7   0.9    5.6  5  TPR_11       TPR repeat
        1.7    9.0  17.9         52    4.3   0.1    7.7  8  kleA_kleC    Uncharacterized KorC regulated protein A


Domain annotation for each model (and alignments):
>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.5    0.0016         1       8      42 .]     755     789 ..     750     789 .. 0.95
   2 !   32.9   0.0   6.2e-11     4e-08       1      42 []     790     831 ..     790     831 .. 0.95
   3 !   48.0   0.0   1.1e-15   7.2e-13       1      42 []     832     873 ..     832     873 .. 0.99
   4 !   41.6   0.0   1.1e-13   7.2e-11       1      42 []     874     915 ..     874     915 .. 0.98
   5 !   43.8   0.0   2.2e-14   1.4e-11       1      42 []     916     957 ..     916     957 .. 0.98
   6 !   42.3   0.1   6.8e-14   4.4e-11       1      41 [.     958     998 ..     958     999 .. 0.98
   7 !   42.8   0.0   4.6e-14   2.9e-11       1      42 []    1000    1041 ..    1000    1041 .. 0.99
   8 !   39.1   0.0     7e-13   4.5e-10       1      42 []    1042    1083 ..    1042    1083 .. 0.99
   9 !   43.0   0.0   4.2e-14   2.7e-11       1      42 []    1084    1125 ..    1084    1125 .. 0.98
  10 !   40.1   0.0   3.4e-13   2.2e-10       1      42 []    1126    1167 ..    1126    1167 .. 0.97
  11 !   39.4   0.0   5.4e-13   3.4e-10       1      42 []    1168    1209 ..    1168    1209 .. 0.99
  12 !   42.6   0.0   5.6e-14   3.6e-11       1      42 []    1210    1251 ..    1210    1251 .. 0.99

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0016
      TPR_10   8 LanalrqrgrydeAealleealairrrllGpdHPd 42 
                 ++ ++r++g+y++A +  + al+ + + lG++H d
  KKY18135.1 755 IGQLYRAQGEYKKAQENVHLALEECIKNLGQEHQD 789
                 799******************************87 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 6.2e-11
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t+  +  L++++ q+g y++Ae+l+ +++++r+r+lG++HPd
  KKY18135.1 790 TLGFMDGLGVIHIQQGFYHGAEELFVQVVETRKRVLGQEHPD 831
                 5677889**********************************9 PP

  == domain 3  score: 48.0 bits;  conditional E-value: 1.1e-15
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t++s+ NLa + +++gr++eAe+l++++++ir+r+lG++HPd
  KKY18135.1 832 TLTSQANLASTFWNQGRWKEAEELFIQVMEIRKRVLGQEHPD 873
                 89***************************************9 PP

  == domain 4  score: 41.6 bits;  conditional E-value: 1.1e-13
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t++s+ NLa + +++gr++eAe+l+ ++++i +r+lG++HP+
  KKY18135.1 874 TLTSQANLASTFWNQGRWKEAEELFVQVIEIGKRVLGQEHPN 915
                 89***************************************5 PP

  == domain 5  score: 43.8 bits;  conditional E-value: 2.2e-14
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t++s+ NLa ++r++gr++eAe+l+ +++++r r+lG++HP+
  KKY18135.1 916 TLTSQANLASIYRNQGRWKEAEELFVQVIEMRMRVLGQEHPH 957
                 89***************************************6 PP

  == domain 6  score: 42.3 bits;  conditional E-value: 6.8e-14
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 t++s+ NLa ++r++gr++eAe+l  +++++r+r+lG++HP
  KKY18135.1 958 TLTSQANLASTYRNQGRWEEAEELRVQVMDTRKRVLGEEHP 998
                 89*************************************** PP

  == domain 7  score: 42.8 bits;  conditional E-value: 4.6e-14
      TPR_10    1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42  
                  t++s  NLa + +++gr++eAe+l  ++++ir+r+lG++HPd
  KKY18135.1 1000 TLASIDNLASIFWDQGRWKEAEQLDVQVMEIRKRVLGQEHPD 1041
                  899**************************************9 PP

  == domain 8  score: 39.1 bits;  conditional E-value: 7e-13
      TPR_10    1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42  
                  t++s+ NLa + +++gr++eAe++  ++++i +r+lG++HPd
  KKY18135.1 1042 TLTSQANLASTFWNQGRWKEAEEFEVQVMEIGKRVLGQEHPD 1083
                  89***************************************9 PP

  == domain 9  score: 43.0 bits;  conditional E-value: 4.2e-14
      TPR_10    1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42  
                  t++s+ NLa + +++gr++eAe+l  ++++ir+r+lG++HP+
  KKY18135.1 1084 TLTSQANLASTFWNQGRWKEAEELEVQVMEIRKRVLGQEHPH 1125
                  89***************************************6 PP

  == domain 10  score: 40.1 bits;  conditional E-value: 3.4e-13
      TPR_10    1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42  
                  t+ s+ NLa + +++gr++eAe+l  ++ +ir+r+lG++HPd
  KKY18135.1 1126 TLISQANLASTFWNQGRWKEAEELEVQVAEIRKRVLGQEHPD 1167
                  67799************************************9 PP

  == domain 11  score: 39.4 bits;  conditional E-value: 5.4e-13
      TPR_10    1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42  
                  t++s+  La ++r++gr++eAe+l  +++++  r+lG++HPd
  KKY18135.1 1168 TLTSQASLASTYRNQGRWKEAEELEVQVMEMSLRVLGQEHPD 1209
                  89***************************************9 PP

  == domain 12  score: 42.6 bits;  conditional E-value: 5.6e-14
      TPR_10    1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42  
                  t++s+ NLa + +++gr++eAe+l  ++ ++r+r+lG++HPd
  KKY18135.1 1210 TLTSQANLASTFWNQGRWKEAEELEVQVAEMRKRVLGQEHPD 1251
                  89***************************************9 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.5   8.2e-10   5.2e-07       6      72 ..     753     818 ..     748     819 .. 0.94
   2 !   50.5   0.0     3e-16   1.9e-13       8      76 ..     796     864 ..     793     865 .. 0.97
   3 !   58.9   0.0   7.3e-19   4.7e-16       7      74 ..     837     904 ..     834     906 .. 0.96
   4 !   59.1   0.0   6.1e-19   3.9e-16       2      75 ..     874     947 ..     873     949 .. 0.96
   5 !   52.8   0.3   5.6e-17   3.6e-14       3      67 ..     917     981 ..     915     981 .. 0.95
   6 !   55.5   0.0   7.8e-18     5e-15       3      76 ..     959    1032 ..     957    1032 .. 0.95
   7 !   51.8   0.0   1.1e-16   7.3e-14       3      74 ..    1002    1072 ..    1001    1074 .. 0.95
   8 !   29.0   0.0   1.6e-09   9.9e-07      28      76 ..    1068    1116 ..    1067    1117 .. 0.96
   9 !   46.2   0.1   6.4e-15   4.1e-12       2      76 ..    1084    1158 ..    1083    1159 .. 0.95
  10 !   46.4   0.2   5.8e-15   3.7e-12       4      74 ..    1128    1198 ..    1125    1201 .. 0.94
  11 !   46.1   0.1   6.9e-15   4.4e-12       2      76 ..    1168    1242 ..    1167    1243 .. 0.94

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 8.2e-10
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 + ++++++r++g+y +A+e+ + ale + + lG +h +t+  + +Lg ++ ++g y  A+el+ +++
  KKY18135.1 753 Y-HIGQLYRAQGEYKKAQENVHLALEECIKNLGQEHQDTLGFMDGLGVIHIQQGFYHGAEELFVQVV 818
                 4.89**********************************************************98765 PP

  == domain 2  score: 50.5 bits;  conditional E-value: 3e-16
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                  l++++ ++g y+ A+el+ +++e ++r+lG +hp+t+t++ nL+ +++ +gr++eA+el+ ++++i++
  KKY18135.1 796 GLGVIHIQQGFYHGAEELFVQVVETRKRVLGQEHPDTLTSQANLASTFWNQGRWKEAEELFIQVMEIRK 864
                 69*****************************************************************98 PP

  == domain 3  score: 58.9 bits;  conditional E-value: 7.3e-19
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                  nla++ + +gr+ eA+el+ +++ei++r+lG +hp+t+t++ nL+ +++ +gr++eA+el+ ++++i
  KKY18135.1 837 ANLASTFWNQGRWKEAEELFIQVMEIRKRVLGQEHPDTLTSQANLASTFWNQGRWKEAEELFVQVIEI 904
                 48************************************************************999997 PP

  == domain 4  score: 59.1 bits;  conditional E-value: 6.1e-19
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 ++t++ nla++ + +gr+ eA+el+ +++ei +r+lG +hp+t+t++ nL+ +yr +gr++eA+el+ ++++++
  KKY18135.1 874 TLTSQANLASTFWNQGRWKEAEELFVQVIEIGKRVLGQEHPNTLTSQANLASIYRNQGRWKEAEELFVQVIEMR 947
                 6778889****************************************************************997 PP

  == domain 5  score: 52.8 bits;  conditional E-value: 5.6e-17
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlel 67 
                 +t++ nla+++r +gr+ eA+el+ +++e++ r+lG +hp t+t++ nL+ +yr +gr+eeA+el
  KKY18135.1 917 LTSQANLASIYRNQGRWKEAEELFVQVIEMRMRVLGQEHPHTLTSQANLASTYRNQGRWEEAEEL 981
                 566779********************************************************986 PP

  == domain 6  score: 55.5 bits;  conditional E-value: 7.8e-18
      TPR_12    3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76  
                  +t++ nla+++r +gr++eA+el  ++++ ++r+lG++hp+t+++  nL+ +++ +gr++eA++l  ++++i++
  KKY18135.1  959 LTSQANLASTYRNQGRWEEAEELRVQVMDTRKRVLGEEHPYTLASIDNLASIFWDQGRWKEAEQLDVQVMEIRK 1032
                  566779***********************************************************999999985 PP

  == domain 7  score: 51.8 bits;  conditional E-value: 1.1e-16
      TPR_12    3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74  
                  a++  nla++ + +gr+ eA++l  +++ei++r+lG +hp+t+t++ nL+ +++ +gr++eA+e+  ++++i
  KKY18135.1 1002 ASID-NLASIFWDQGRWKEAEQLDVQVMEIRKRVLGQEHPDTLTSQANLASTFWNQGRWKEAEEFEVQVMEI 1072
                  6677.***********************************************************99998887 PP

  == domain 8  score: 29.0 bits;  conditional E-value: 1.6e-09
      TPR_12   28 kaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76  
                  +++ei +r+lG +hp+t+t++ nL+ +++ +gr++eA+el  ++++i++
  KKY18135.1 1068 QVMEIGKRVLGQEHPDTLTSQANLASTFWNQGRWKEAEELEVQVMEIRK 1116
                  6899******************************************998 PP

  == domain 9  score: 46.2 bits;  conditional E-value: 6.4e-15
      TPR_12    2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76  
                  ++t++ nla++ + +gr+ eA+el  +++ei++r+lG +hp t++++ nL+ +++ +gr++eA+el  ++ +i++
  KKY18135.1 1084 TLTSQANLASTFWNQGRWKEAEELEVQVMEIRKRVLGQEHPHTLISQANLASTFWNQGRWKEAEELEVQVAEIRK 1158
                  6778889***********************************************************999999987 PP

  == domain 10  score: 46.4 bits;  conditional E-value: 5.8e-15
      TPR_12    4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74  
                  +++ nla++ + +gr+ eA+el  ++ ei++r+lG +hp+t+t++  L+ +yr +gr++eA+el  +++++
  KKY18135.1 1128 ISQANLASTFWNQGRWKEAEELEVQVAEIRKRVLGQEHPDTLTSQASLASTYRNQGRWKEAEELEVQVMEM 1198
                  55669***********************************************************9999988 PP

  == domain 11  score: 46.1 bits;  conditional E-value: 6.9e-15
      TPR_12    2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76  
                  ++t++  la+++r +gr+ eA+el  +++e+  r+lG +hp+t+t++ nL+ +++ +gr++eA+el  ++ ++++
  KKY18135.1 1168 TLTSQASLASTYRNQGRWKEAEELEVQVMEMSLRVLGQEHPDTLTSQANLASTFWNQGRWKEAEELEVQVAEMRK 1242
                  5666756***********************************************************999999987 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1    0.0045       2.9       4      19 ..     754     769 ..     751     777 .. 0.88
   2 ?    6.1   0.0      0.02        13       5      34 ..     797     826 ..     794     828 .. 0.87
   3 !   20.7   0.0   4.5e-07   0.00029       4      34 ..     838     868 ..     837     870 .. 0.92
   4 !   17.7   0.0     4e-06    0.0026       4      33 ..     880     909 ..     879     912 .. 0.86
   5 !   23.6   0.0   5.1e-08   3.3e-05       4      34 ..     922     952 ..     921     954 .. 0.89
   6 !   21.4   0.1   2.6e-07   0.00017       4      34 ..     964     994 ..     963     996 .. 0.87
   7 !   17.0   0.0   6.8e-06    0.0043       1      34 [.    1003    1036 ..    1003    1038 .. 0.90
   8 !   11.0   0.0   0.00054      0.35       4      21 ..    1048    1065 ..    1047    1079 .. 0.90
   9 !   12.5   0.0   0.00018      0.12       4      33 ..    1090    1119 ..    1089    1122 .. 0.82
  10 !   11.9   0.0   0.00027      0.17       4      30 ..    1132    1158 ..    1131    1164 .. 0.80
  11 !   13.0   0.0   0.00012     0.078       4      21 ..    1174    1191 ..    1173    1206 .. 0.83
  12 !   12.3   0.0   0.00021      0.13       4      32 ..    1216    1244 ..    1215    1248 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0045
       TPR_7   4 nLarlysrlGdyeeAi 19 
                  +++ly+++G+y++A 
  KKY18135.1 754 HIGQLYRAQGEYKKAQ 769
                 79************96 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.02
       TPR_7   5 LarlysrlGdyeeAielyeqsLaltkdped 34 
                 L++++ ++G y  A+el+ q+ +++k+ ++
  KKY18135.1 797 LGVIHIQQGFYHGAEELFVQVVETRKRVLG 826
                 9*******************8888887765 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 4.5e-07
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltkdped 34 
                 nLa+++ ++G+++eA+el+ q+++++k+ ++
  KKY18135.1 838 NLASTFWNQGRWKEAEELFIQVMEIRKRVLG 868
                 9********************9999998876 PP

  == domain 4  score: 17.7 bits;  conditional E-value: 4e-06
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltkdpe 33 
                 nLa+++ ++G+++eA+el+ q++++ k+ +
  KKY18135.1 880 NLASTFWNQGRWKEAEELFVQVIEIGKRVL 909
                 9********************888766655 PP

  == domain 5  score: 23.6 bits;  conditional E-value: 5.1e-08
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltkdped 34 
                 nLa++y+++G+++eA+el+ q+++++ + ++
  KKY18135.1 922 NLASIYRNQGRWKEAEELFVQVIEMRMRVLG 952
                 9********************9999877665 PP

  == domain 6  score: 21.4 bits;  conditional E-value: 2.6e-07
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltkdped 34 
                 nLa++y+++G++eeA+el  q++ ++k+ ++
  KKY18135.1 964 NLASTYRNQGRWEEAEELRVQVMDTRKRVLG 994
                 9********************8877777665 PP

  == domain 7  score: 17.0 bits;  conditional E-value: 6.8e-06
       TPR_7    1 aLlnLarlysrlGdyeeAielyeqsLaltkdped 34  
                  +++nLa+++ ++G+++eA++l  q+++++k+ ++
  KKY18135.1 1003 SIDNLASIFWDQGRWKEAEQLDVQVMEIRKRVLG 1036
                  578*********************9999998776 PP

  == domain 8  score: 11.0 bits;  conditional E-value: 0.00054
       TPR_7    4 nLarlysrlGdyeeAiel 21  
                  nLa+++ ++G+++eA+e+
  KKY18135.1 1048 NLASTFWNQGRWKEAEEF 1065
                  9**************997 PP

  == domain 9  score: 12.5 bits;  conditional E-value: 0.00018
       TPR_7    4 nLarlysrlGdyeeAielyeqsLaltkdpe 33  
                  nLa+++ ++G+++eA+el  q+++++k+ +
  KKY18135.1 1090 NLASTFWNQGRWKEAEELEVQVMEIRKRVL 1119
                  9****************9777777776655 PP

  == domain 10  score: 11.9 bits;  conditional E-value: 0.00027
       TPR_7    4 nLarlysrlGdyeeAielyeqsLaltk 30  
                  nLa+++ ++G+++eA+el  q+ +++k
  KKY18135.1 1132 NLASTFWNQGRWKEAEELEVQVAEIRK 1158
                  9***************98666666655 PP

  == domain 11  score: 13.0 bits;  conditional E-value: 0.00012
       TPR_7    4 nLarlysrlGdyeeAiel 21  
                   La++y+++G+++eA+el
  KKY18135.1 1174 SLASTYRNQGRWKEAEEL 1191
                  69**************98 PP

  == domain 12  score: 12.3 bits;  conditional E-value: 0.00021
       TPR_7    4 nLarlysrlGdyeeAielyeqsLaltkdp 32  
                  nLa+++ ++G+++eA+el  q+ +++k+ 
  KKY18135.1 1216 NLASTFWNQGRWKEAEELEVQVAEMRKRV 1244
                  9****************977777776665 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.7    0.0004      0.25       5      28 ..     753     776 ..     750     779 .. 0.83
   2 ?   -1.0   0.0         3   1.9e+03       7      29 ..     797     819 ..     796     821 .. 0.87
   3 !    8.9   0.0    0.0021       1.4       6      30 ..     838     862 ..     835     865 .. 0.90
   4 !   11.5   0.0   0.00031       0.2       6      30 ..     880     904 ..     877     905 .. 0.94
   5 !   15.9   0.0   1.3e-05    0.0084       5      30 ..     921     946 ..     919     947 .. 0.93
   6 !    9.5   0.0    0.0014      0.87       5      22 ..     963     980 ..     961     981 .. 0.92
   7 ?    3.0   0.0      0.15        98       6      22 ..    1006    1022 ..    1006    1023 .. 0.94
   8 ?    4.7   0.0     0.044        28       6      22 ..    1048    1064 ..    1045    1065 .. 0.91
   9 ?    4.2   0.0     0.064        41       6      22 ..    1090    1106 ..    1087    1107 .. 0.92
  10 ?    4.2   0.0     0.064        41       6      22 ..    1132    1148 ..    1129    1149 .. 0.92
  11 ?    5.5   0.0     0.025        16       6      22 ..    1174    1190 ..    1171    1191 .. 0.91
  12 ?    4.2   0.0     0.064        41       6      22 ..    1216    1232 ..    1213    1233 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0004
                 HHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekAL 28 
                 y +G++y+ +g+y++A e    AL
  KKY18135.1 753 YHIGQLYRAQGEYKKAQENVHLAL 776
                 99**************88766666 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 3
                 HHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekALe 29 
                 lG+++ ++g y  A+e + +++e
  KKY18135.1 797 LGVIHIQQGFYHGAEELFVQVVE 819
                 9********99999999988776 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0021
                 HHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALel 30 
                 nl+ ++ ++g+++eA+e + ++ e+
  KKY18135.1 838 NLASTFWNQGRWKEAEELFIQVMEI 862
                 9******************998887 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.00031
                 HHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALel 30 
                 nl+ ++ ++g+++eA+e + +++e+
  KKY18135.1 880 NLASTFWNQGRWKEAEELFVQVIEI 904
                 9**********************97 PP

  == domain 5  score: 15.9 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALel 30 
                  nl+ +y+++g+++eA+e + +++e 
  KKY18135.1 921 ANLASIYRNQGRWKEAEELFVQVIEM 946
                 59*********************996 PP

  == domain 6  score: 9.5 bits;  conditional E-value: 0.0014
                 HHHHHHHHHTT-HHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAle 22 
                  nl+ +y+++g+++eA+e
  KKY18135.1 963 ANLASTYRNQGRWEEAEE 980
                 59**************98 PP

  == domain 7  score: 3.0 bits;  conditional E-value: 0.15
                  HHHHHHHHTT-HHHHHH CS
       TPR_1    6 nlGnayfklgkydeAle 22  
                  nl+ ++  +g+++eA++
  KKY18135.1 1006 NLASIFWDQGRWKEAEQ 1022
                  99*************87 PP

  == domain 8  score: 4.7 bits;  conditional E-value: 0.044
                  HHHHHHHHTT-HHHHHH CS
       TPR_1    6 nlGnayfklgkydeAle 22  
                  nl+ ++ ++g+++eA+e
  KKY18135.1 1048 NLASTFWNQGRWKEAEE 1064
                  9**************98 PP

  == domain 9  score: 4.2 bits;  conditional E-value: 0.064
                  HHHHHHHHTT-HHHHHH CS
       TPR_1    6 nlGnayfklgkydeAle 22  
                  nl+ ++ ++g+++eA+e
  KKY18135.1 1090 NLASTFWNQGRWKEAEE 1106
                  9**************98 PP

  == domain 10  score: 4.2 bits;  conditional E-value: 0.064
                  HHHHHHHHTT-HHHHHH CS
       TPR_1    6 nlGnayfklgkydeAle 22  
                  nl+ ++ ++g+++eA+e
  KKY18135.1 1132 NLASTFWNQGRWKEAEE 1148
                  9**************98 PP

  == domain 11  score: 5.5 bits;  conditional E-value: 0.025
                  HHHHHHHHTT-HHHHHH CS
       TPR_1    6 nlGnayfklgkydeAle 22  
                   l+ +y+++g+++eA+e
  KKY18135.1 1174 SLASTYRNQGRWKEAEE 1190
                  5899***********98 PP

  == domain 12  score: 4.2 bits;  conditional E-value: 0.064
                  HHHHHHHHTT-HHHHHH CS
       TPR_1    6 nlGnayfklgkydeAle 22  
                  nl+ ++ ++g+++eA+e
  KKY18135.1 1216 NLASTFWNQGRWKEAEE 1232
                  9**************98 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.6    0.0002      0.13       3      31 ..     751     779 ..     750     782 .. 0.88
   2 ?    5.9   0.0     0.025        16       6      29 ..     796     819 ..     793     822 .. 0.90
   3 !    8.4   0.0    0.0039       2.5       6      30 ..     838     862 ..     835     865 .. 0.87
   4 !   11.3   0.0   0.00045      0.29       6      30 ..     880     904 ..     877     907 .. 0.92
   5 !   15.6   0.0   1.9e-05     0.012       6      29 ..     922     945 ..     919     948 .. 0.92
   6 !    9.0   0.1    0.0025       1.6       6      22 ..     964     980 ..     961     981 .. 0.91
   7 ?    3.3   0.0      0.18   1.1e+02       6      22 ..    1006    1022 ..    1003    1023 .. 0.90
   8 ?    4.0   0.0       0.1        65       6      22 ..    1048    1064 ..    1045    1065 .. 0.90
   9 ?    4.0   0.0       0.1        65       6      22 ..    1090    1106 ..    1087    1107 .. 0.90
  10 ?    4.1   0.0     0.092        59       6      22 ..    1132    1148 ..    1128    1149 .. 0.89
  11 ?    5.9   0.1     0.025        16       7      22 ..    1175    1190 ..    1172    1191 .. 0.90
  12 ?    4.0   0.0       0.1        65       6      22 ..    1216    1232 ..    1213    1233 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.0002
       TPR_2   3 alynlGlayyklgdyeeAleafekAleld 31 
                 a y +G++y+++g+y++A e    Ale +
  KKY18135.1 751 AVYHIGQLYRAQGEYKKAQENVHLALEEC 779
                 5699****************999999865 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.025
       TPR_2   6 nlGlayyklgdyeeAleafekAle 29 
                  lG +++++g y  A+e+f +++e
  KKY18135.1 796 GLGVIHIQQGFYHGAEELFVQVVE 819
                 69*****************99876 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0039
       TPR_2   6 nlGlayyklgdyeeAleafekAlel 30 
                 nl+   +++g+++eA+e+f ++ e+
  KKY18135.1 838 NLASTFWNQGRWKEAEELFIQVMEI 862
                 89999**************887776 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 0.00045
       TPR_2   6 nlGlayyklgdyeeAleafekAlel 30 
                 nl+   +++g+++eA+e+f +++e+
  KKY18135.1 880 NLASTFWNQGRWKEAEELFVQVIEI 904
                 89999****************9997 PP

  == domain 5  score: 15.6 bits;  conditional E-value: 1.9e-05
       TPR_2   6 nlGlayyklgdyeeAleafekAle 29 
                 nl+ +y+++g+++eA+e+f +++e
  KKY18135.1 922 NLASIYRNQGRWKEAEELFVQVIE 945
                 89******************9998 PP

  == domain 6  score: 9.0 bits;  conditional E-value: 0.0025
       TPR_2   6 nlGlayyklgdyeeAle 22 
                 nl+  y+++g++eeA+e
  KKY18135.1 964 NLASTYRNQGRWEEAEE 980
                 89*************98 PP

  == domain 7  score: 3.3 bits;  conditional E-value: 0.18
       TPR_2    6 nlGlayyklgdyeeAle 22  
                  nl+ + + +g+++eA++
  KKY18135.1 1006 NLASIFWDQGRWKEAEQ 1022
                  8999***********86 PP

  == domain 8  score: 4.0 bits;  conditional E-value: 0.1
       TPR_2    6 nlGlayyklgdyeeAle 22  
                  nl+   +++g+++eA+e
  KKY18135.1 1048 NLASTFWNQGRWKEAEE 1064
                  89999**********98 PP

  == domain 9  score: 4.0 bits;  conditional E-value: 0.1
       TPR_2    6 nlGlayyklgdyeeAle 22  
                  nl+   +++g+++eA+e
  KKY18135.1 1090 NLASTFWNQGRWKEAEE 1106
                  89999**********98 PP

  == domain 10  score: 4.1 bits;  conditional E-value: 0.092
       TPR_2    6 nlGlayyklgdyeeAle 22  
                  nl+   +++g+++eA+e
  KKY18135.1 1132 NLASTFWNQGRWKEAEE 1148
                  89999**********98 PP

  == domain 11  score: 5.9 bits;  conditional E-value: 0.025
       TPR_2    7 lGlayyklgdyeeAle 22  
                  l+  y+++g+++eA+e
  KKY18135.1 1175 LASTYRNQGRWKEAEE 1190
                  8999**********98 PP

  == domain 12  score: 4.0 bits;  conditional E-value: 0.1
       TPR_2    6 nlGlayyklgdyeeAle 22  
                  nl+   +++g+++eA+e
  KKY18135.1 1216 NLASTFWNQGRWKEAEE 1232
                  89999**********98 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1      0.21   1.4e+02      27      46 ..     751     770 ..     741     778 .. 0.84
   2 !   10.6   0.0   0.00095      0.61       3      53 ..     803     861 ..     801     866 .. 0.82
   3 ?    7.0   0.0     0.013       8.5      18      50 ..     868     900 ..     861     907 .. 0.86
   4 !   14.4   0.0   6.2e-05      0.04       4      50 ..     888     942 ..     888     947 .. 0.83
   5 !    9.1   0.0    0.0029       1.9      18      47 ..     952     981 ..     941     989 .. 0.90
   6 ?    0.2   0.0       1.8   1.1e+03      31      47 ..    1007    1023 ..     995    1029 .. 0.87
   7 ?    7.1   0.0     0.012       7.9       3      46 ..    1013    1064 ..    1011    1065 .. 0.77
   8 ?    6.0   0.0     0.027        17      16      47 ..    1075    1107 ..    1067    1116 .. 0.87
   9 ?    4.3   0.0     0.089        57      18      47 ..    1120    1149 ..    1109    1155 .. 0.87
  10 ?    6.1   0.0     0.025        16      18      47 ..    1162    1191 ..    1151    1198 .. 0.87
  11 ?    5.3   0.0     0.046        29      18      47 ..    1204    1233 ..    1194    1240 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.21
      TPR_19  27 arllLAeallalgqldeAea 46 
                 a +   +++ a+g++++A++
  KKY18135.1 751 AVYHIGQLYRAQGEYKKAQE 770
                 5667789***********98 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00095
      TPR_19   3 aegdyaeAlalleqal........qedpknaearllLAeallalgqldeAealLdalpe 53 
                 ++g y  A +l+ q+         qe p+ +  +++LA   +++g+++eAe+l  +++e
  KKY18135.1 803 QQGFYHGAEELFVQVVetrkrvlgQEHPDTLTSQANLASTFWNQGRWKEAEELFIQVME 861
                 67778888888888555555555599**************************9988876 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.013
      TPR_19  18 lqedpknaearllLAeallalgqldeAealLda 50 
                  qe p+ +  +++LA   +++g+++eAe+l  +
  KKY18135.1 868 GQEHPDTLTSQANLASTFWNQGRWKEAEELFVQ 900
                 489999999*******************99755 PP

  == domain 4  score: 14.4 bits;  conditional E-value: 6.2e-05
      TPR_19   4 egdyaeAlalleqal........qedpknaearllLAeallalgqldeAealLda 50 
                 +g+  eA +l+ q++        qe p+ +  +++LA ++ ++g+++eAe+l  +
  KKY18135.1 888 QGRWKEAEELFVQVIeigkrvlgQEHPNTLTSQANLASIYRNQGRWKEAEELFVQ 942
                 7888999888888665555555688**************************9765 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.0029
      TPR_19  18 lqedpknaearllLAeallalgqldeAeal 47 
                  qe p+ +  +++LA  + ++g+++eAe+l
  KKY18135.1 952 GQEHPHTLTSQANLASTYRNQGRWEEAEEL 981
                 5899************************96 PP

  == domain 6  score: 0.2 bits;  conditional E-value: 1.8
      TPR_19   31 LAeallalgqldeAeal 47  
                  LA + + +g+++eAe+l
  KKY18135.1 1007 LASIFWDQGRWKEAEQL 1023
                  8888999*******986 PP

  == domain 7  score: 7.1 bits;  conditional E-value: 0.012
      TPR_19    3 aegdyaeA.......lalleqal.qedpknaearllLAeallalgqldeAea 46  
                  ++g+  eA       +++ +++l qe p+ +  +++LA   +++g+++eAe+
  KKY18135.1 1013 DQGRWKEAeqldvqvMEIRKRVLgQEHPDTLTSQANLASTFWNQGRWKEAEE 1064
                  67777777444444455555553589************************98 PP

  == domain 8  score: 6.0 bits;  conditional E-value: 0.027
      TPR_19   16 qa.lqedpknaearllLAeallalgqldeAeal 47  
                  ++  qe p+ +  +++LA   +++g+++eAe+l
  KKY18135.1 1075 RVlGQEHPDTLTSQANLASTFWNQGRWKEAEEL 1107
                  5524899************************96 PP

  == domain 9  score: 4.3 bits;  conditional E-value: 0.089
      TPR_19   18 lqedpknaearllLAeallalgqldeAeal 47  
                   qe p+ +  +++LA   +++g+++eAe+l
  KKY18135.1 1120 GQEHPHTLISQANLASTFWNQGRWKEAEEL 1149
                  488999999999****************96 PP

  == domain 10  score: 6.1 bits;  conditional E-value: 0.025
      TPR_19   18 lqedpknaearllLAeallalgqldeAeal 47  
                   qe p+ +  ++ LA  + ++g+++eAe+l
  KKY18135.1 1162 GQEHPDTLTSQASLASTYRNQGRWKEAEEL 1191
                  4889999999999***************96 PP

  == domain 11  score: 5.3 bits;  conditional E-value: 0.046
      TPR_19   18 lqedpknaearllLAeallalgqldeAeal 47  
                   qe p+ +  +++LA   +++g+++eAe+l
  KKY18135.1 1204 GQEHPDTLTSQANLASTFWNQGRWKEAEEL 1233
                  4889999999******************96 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.3      0.26   1.6e+02      26      53 ..     741     768 ..     733     770 .. 0.80
   2 !   11.8   0.0   0.00047       0.3       4      57 ..     798     856 ..     796     860 .. 0.84
   3 !    9.0   0.0    0.0034       2.1      29      58 ..     870     899 ..     864     907 .. 0.81
   4 !   15.7   0.0   2.8e-05     0.018       2      58 ..     880     941 ..     879     949 .. 0.84
   5 !   11.9   0.1   0.00042      0.27       2      55 ..     922     980 ..     921     981 .. 0.84
   6 ?    3.1   0.0      0.23   1.5e+02      40      56 ..    1007    1023 ..    1006    1027 .. 0.75
   7 ?    6.1   0.0     0.028        18      29      56 ..    1038    1065 ..    1032    1068 .. 0.88
   8 ?    6.6   0.0      0.02        13      29      56 ..    1080    1107 ..    1075    1112 .. 0.88
   9 ?    5.0   0.0     0.061        39      30      56 ..    1123    1149 ..    1117    1158 .. 0.80
  10 ?    5.8   0.0     0.035        23      29      56 ..    1164    1191 ..    1132    1195 .. 0.71
  11 ?    7.2   0.0     0.013       8.2      29      56 ..    1206    1233 ..    1200    1241 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.26
      TPR_16  26 rdpssPdaaeAllllgdaalrqgrlaeA 53 
                 r+  + +   A ++ g+++ +qg++++A
  KKY18135.1 741 RYTYDAVLLKAVYHIGQLYRAQGEYKKA 768
                 555666777899*************998 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00047
      TPR_16   4 araalragdyddAaaaleaalkrdp.....ssPdaaeAllllgdaalrqgrlaeAaaly 57 
                 + +++++g y  A++++ ++++ ++     ++Pd+  ++ +l+  ++ qgr++eA++l+
  KKY18135.1 798 GVIHIQQGFYHGAEELFVQVVETRKrvlgqEHPDTLTSQANLASTFWNQGRWKEAEELF 856
                 6678999999999999999999876333336899**********************776 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0034
      TPR_16  29 ssPdaaeAllllgdaalrqgrlaeAaalyr 58 
                 ++Pd+  ++ +l+  ++ qgr++eA++l+ 
  KKY18135.1 870 EHPDTLTSQANLASTFWNQGRWKEAEELFV 899
                 479999999999999999999999997764 PP

  == domain 4  score: 15.7 bits;  conditional E-value: 2.8e-05
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPd........aaeAllllgdaalrqgrlaeAaalyr 58 
                 +la  ++++g++ +A++++ ++++ ++   +        +  ++ +l+ ++  qgr++eA++l+ 
  KKY18135.1 880 NLASTFWNQGRWKEAEELFVQVIEIGK---RvlgqehpnTLTSQANLASIYRNQGRWKEAEELFV 941
                 68999*******************996...223355555**********************8774 PP

  == domain 5  score: 11.9 bits;  conditional E-value: 0.00042
      TPR_16   2 alaraalragdyddAaaaleaalkrd.....pssPdaaeAllllgdaalrqgrlaeAaa 55 
                 +la +++++g++ +A++++ ++++++      ++P +  ++ +l+  +  qgr++eA++
  KKY18135.1 922 NLASIYRNQGRWKEAEELFVQVIEMRmrvlgQEHPHTLTSQANLASTYRNQGRWEEAEE 980
                 6899*******************9862222256777*********************97 PP

  == domain 6  score: 3.1 bits;  conditional E-value: 0.23
      TPR_16   40 lgdaalrqgrlaeAaal 56  
                  l+ +++ qgr++eA++l
  KKY18135.1 1007 LASIFWDQGRWKEAEQL 1023
                  67788888888888765 PP

  == domain 7  score: 6.1 bits;  conditional E-value: 0.028
      TPR_16   29 ssPdaaeAllllgdaalrqgrlaeAaal 56  
                  ++Pd+  ++ +l+  ++ qgr++eA+++
  KKY18135.1 1038 EHPDTLTSQANLASTFWNQGRWKEAEEF 1065
                  579999*******************976 PP

  == domain 8  score: 6.6 bits;  conditional E-value: 0.02
      TPR_16   29 ssPdaaeAllllgdaalrqgrlaeAaal 56  
                  ++Pd+  ++ +l+  ++ qgr++eA++l
  KKY18135.1 1080 EHPDTLTSQANLASTFWNQGRWKEAEEL 1107
                  5799999******************965 PP

  == domain 9  score: 5.0 bits;  conditional E-value: 0.061
      TPR_16   30 sPdaaeAllllgdaalrqgrlaeAaal 56  
                  +P +  ++ +l+  ++ qgr++eA++l
  KKY18135.1 1123 HPHTLISQANLASTFWNQGRWKEAEEL 1149
                  677778888999999********9955 PP

  == domain 10  score: 5.8 bits;  conditional E-value: 0.035
      TPR_16   29 ssPdaaeAllllgdaalrqgrlaeAaal 56  
                  ++Pd+  ++  l+  +  qgr++eA++l
  KKY18135.1 1164 EHPDTLTSQASLASTYRNQGRWKEAEEL 1191
                  4788999999999999999999999865 PP

  == domain 11  score: 7.2 bits;  conditional E-value: 0.013
      TPR_16   29 ssPdaaeAllllgdaalrqgrlaeAaal 56  
                  ++Pd+  ++ +l+  ++ qgr++eA++l
  KKY18135.1 1206 EHPDTLTSQANLASTFWNQGRWKEAEEL 1233
                  579999*******************965 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   3.2   6.7e-12   4.3e-09      42     187 ..     751     901 ..     733     907 .. 0.90
   2 !   36.9   3.1   4.2e-12   2.7e-09      36     183 ..     913    1065 ..     906    1075 .. 0.89
   3 !   28.3   2.7   1.7e-09   1.1e-06      38     183 ..     957    1107 ..     954    1111 .. 0.84
   4 !   21.7   7.4   1.7e-07   0.00011      40     187 ..    1085    1237 ..    1066    1244 .. 0.84

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 6.7e-12
    TPR_MalT  42 atavlGeasllqGdleaAlqalq.eaeklarqadslhv.allallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndL 138
                 a + +G  +  qG+ ++A++    ++e+ +++ ++ h+ +l  + +++ i+++qG+ h A+e++ q  +  ++  +q+ p     ++ la  ++ +++ 
  KKY18135.1 751 AVYHIGQLYRAQGEYKKAQENVHlALEECIKNLGQEHQdTLGFMDGLGVIHIQQGFYHGAEELFVQVVETRKRVLGQEHPDTLTSQANLASTFWNQGRW 849
                 55689*************988774778899*****99989*********************************************************** PP

    TPR_MalT 139 eeAeqhlqeGielleql..ep.eaaldayvllarialaqGdleeAetlleka 187
                 +eAe+   + +e+ +++  ++   +l +++ la   + qG+++eAe+l+ + 
  KKY18135.1 850 KEAEELFIQVMEIRKRVlgQEhPDTLTSQANLASTFWNQGRWKEAEELFVQV 901
                 ****************87544356889*********************9875 PP

  == domain 2  score: 36.9 bits;  conditional E-value: 4.2e-12
    TPR_MalT   36 llariaatavlGeasllqGdleaAlqalqeaekl...arqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlla 129 
                  ++  ++  a+l+ ++  qG+ ++A++ + +++++    ++++++h +l++   +a +++ qGr +eA+e+  q +   ++  +++ p        la
  KKY18135.1  913 HPNTLTSQANLASIYRNQGRWKEAEELFVQVIEMrmrVLGQEHPH-TLTSQANLASTYRNQGRWEEAEELRVQVMDTRKRVLGEEHPYTLASIDNLA 1008
                  5555667789999****************9998754457777777.99************************************************* PP

    TPR_MalT  130 dllyEwndLeeAeqhlqeGielleql..ep.eaaldayvllarialaqGdleeAetl 183 
                   +++++++ +eAeq   + +e+ +++  ++   +l +++ la   + qG+++eAe+ 
  KKY18135.1 1009 SIFWDQGRWKEAEQLDVQVMEIRKRVlgQEhPDTLTSQANLASTFWNQGRWKEAEEF 1065
                  *************************87544356889******************985 PP

  == domain 3  score: 28.3 bits;  conditional E-value: 1.7e-09
    TPR_MalT   38 ariaatavlGeasllqGdleaAlqalqeaekl.arqadslhv.allallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladll 132 
                  + ++  a+l+ ++  qG+ e+A++   ++ ++  r  +  h  +l ++  +a i   qGr +eA+++  q ++  ++  +q+ p     ++ la  +
  KKY18135.1  957 HTLTSQANLASTYRNQGRWEEAEELRVQVMDTrKRVLGEEHPyTLASIDNLASIFWDQGRWKEAEQLDVQVMEIRKRVLGQEHPDTLTSQANLASTF 1053
                  55566788999999999999999998888865246666665548999999999***********99999999999999999999999999999999* PP

    TPR_MalT  133 yEwndLeeAeqhlqeGielleql..ep.eaaldayvllarialaqGdleeAetl 183 
                  + +++ +eAe++  + +e+++++  ++   +l +++ la   + qG+++eAe+l
  KKY18135.1 1054 WNQGRWKEAEEFEVQVMEIGKRVlgQEhPDTLTSQANLASTFWNQGRWKEAEEL 1107
                  **********99999999999976544256889999999*********999987 PP

  == domain 4  score: 21.7 bits;  conditional E-value: 1.7e-07
    TPR_MalT   40 iaatavlGeasllqGdleaAlqalq...eaeklarqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladlly 133 
                  ++  a+l+ +++ qG+ ++A++      e++k  ++++++h +l +   +a +   qGr +eA+e+  q  +  ++  +q+ p     +++la  ++
  KKY18135.1 1085 LTSQANLASTFWNQGRWKEAEELEVqvmEIRKRVLGQEHPH-TLISQANLASTFWNQGRWKEAEELEVQVAEIRKRVLGQEHPDTLTSQASLASTYR 1180
                  4556788999**********996541226677789999999.8999999************************************************ PP

    TPR_MalT  134 EwndLeeAeqhlqeGielleql..ep.eaaldayvllarialaqGdleeAetlleka 187 
                   +++ +eAe+   + +e++ ++  ++   +l +++ la   + qG+++eAe+l  + 
  KKY18135.1 1181 NQGRWKEAEELEVQVMEMSLRVlgQEhPDTLTSQANLASTFWNQGRWKEAEELEVQV 1237
                  ***********999999999976544256889*******************997665 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       3.8   2.5e+03       8      21 ..     756     769 ..     756     770 .. 0.87
   2 ?    7.1   0.0     0.016        10       4      23 ..     836     855 ..     833     856 .. 0.90
   3 ?    7.5   0.0     0.012       7.5       4      24 ..     878     898 ..     875     900 .. 0.90
   4 ?    7.4   0.0     0.012       7.8       4      24 ..     920     940 ..     917     942 .. 0.90
   5 !    9.4   0.0    0.0028       1.8       4      23 ..     962     981 ..     959     983 .. 0.92
   6 ?    4.7   0.0     0.093        60       6      23 ..    1006    1023 ..    1006    1023 .. 0.88
   7 ?    5.5   0.0      0.05        32       4      22 ..    1046    1064 ..    1043    1065 .. 0.90
   8 ?    6.3   0.0     0.028        18       4      23 ..    1088    1107 ..    1085    1107 .. 0.91
   9 ?    6.0   0.0     0.035        22       4      23 ..    1130    1149 ..    1128    1149 .. 0.91
  10 ?    4.8   0.0     0.086        55       4      23 ..    1172    1191 ..    1169    1191 .. 0.89
  11 ?    6.3   0.0     0.028        18       4      23 ..    1214    1233 ..    1211    1233 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 3.8
       TPR_4   8 ArallalGdldeAr 21 
                 ++++ a+G++  A+
  KKY18135.1 756 GQLYRAQGEYKKAQ 769
                 6899******9997 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.016
       TPR_4   4 llaLArallalGdldeAral 23 
                 +++LA + + +G++ eA++l
  KKY18135.1 836 QANLASTFWNQGRWKEAEEL 855
                 789***************98 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.012
       TPR_4   4 llaLArallalGdldeArall 24 
                 +++LA + + +G++ eA++l+
  KKY18135.1 878 QANLASTFWNQGRWKEAEELF 898
                 789***************986 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.012
       TPR_4   4 llaLArallalGdldeArall 24 
                 +++LA  +  +G++ eA++l+
  KKY18135.1 920 QANLASIYRNQGRWKEAEELF 940
                 799***************986 PP

  == domain 5  score: 9.4 bits;  conditional E-value: 0.0028
       TPR_4   4 llaLArallalGdldeAral 23 
                 +++LA ++  +G+++eA++l
  KKY18135.1 962 QANLASTYRNQGRWEEAEEL 981
                 799***************87 PP

  == domain 6  score: 4.7 bits;  conditional E-value: 0.093
       TPR_4    6 aLArallalGdldeAral 23  
                  +LA   +++G++ eA++l
  KKY18135.1 1006 NLASIFWDQGRWKEAEQL 1023
                  678888*********986 PP

  == domain 7  score: 5.5 bits;  conditional E-value: 0.05
       TPR_4    4 llaLArallalGdldeAra 22  
                  +++LA + + +G++ eA++
  KKY18135.1 1046 QANLASTFWNQGRWKEAEE 1064
                  789**************97 PP

  == domain 8  score: 6.3 bits;  conditional E-value: 0.028
       TPR_4    4 llaLArallalGdldeAral 23  
                  +++LA + + +G++ eA++l
  KKY18135.1 1088 QANLASTFWNQGRWKEAEEL 1107
                  789**************986 PP

  == domain 9  score: 6.0 bits;  conditional E-value: 0.035
       TPR_4    4 llaLArallalGdldeAral 23  
                  +++LA + + +G++ eA++l
  KKY18135.1 1130 QANLASTFWNQGRWKEAEEL 1149
                  789**************986 PP

  == domain 10  score: 4.8 bits;  conditional E-value: 0.086
       TPR_4    4 llaLArallalGdldeAral 23  
                  ++ LA ++  +G++ eA++l
  KKY18135.1 1172 QASLASTYRNQGRWKEAEEL 1191
                  678999***********986 PP

  == domain 11  score: 6.3 bits;  conditional E-value: 0.028
       TPR_4    4 llaLArallalGdldeAral 23  
                  +++LA + + +G++ eA++l
  KKY18135.1 1214 QANLASTFWNQGRWKEAEEL 1233
                  789**************986 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.3    0.0014      0.92       2      22 ..     750     770 ..     749     778 .. 0.88
   2 ?   -0.3   0.0       2.7   1.7e+03       7      29 ..     797     819 ..     795     822 .. 0.90
   3 ?    7.3   0.0      0.01       6.4       4      32 ..     836     864 ..     833     865 .. 0.91
   4 ?    7.2   0.0      0.01       6.6       4      30 ..     878     904 ..     875     904 .. 0.92
   5 !   11.6   0.0   0.00039      0.25       4      30 ..     920     946 ..     917     947 .. 0.92
   6 ?    5.4   0.0     0.041        26       4      22 ..     962     980 ..     959     981 .. 0.89
   7 ?   -0.2   0.0       2.5   1.6e+03       6      22 ..    1006    1022 ..    1003    1023 .. 0.88
   8 ?    1.8   0.0      0.55   3.5e+02       4      23 ..    1046    1065 ..    1043    1070 .. 0.90
   9 ?    1.1   0.0      0.91   5.8e+02       4      22 ..    1088    1106 ..    1085    1115 .. 0.89
  10 ?    0.5   0.0       1.5   9.4e+02       5      22 ..    1131    1148 ..    1129    1155 .. 0.91
  11 ?    1.5   0.0      0.69   4.5e+02       5      22 ..    1173    1190 ..    1169    1191 .. 0.86
  12 ?    1.0   0.0         1   6.5e+02       4      22 ..    1214    1232 ..    1211    1233 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0014
                 CHHHHHHHHHHHTT-HHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAke 22 
                 +a y++g++y+ +g+y++A+e
  KKY18135.1 750 KAVYHIGQLYRAQGEYKKAQE 770
                 6789***************98 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 2.7
                 HHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekale 29 
                 lg i++++g y+ A+e + +++e
  KKY18135.1 797 LGVIHIQQGFYHGAEELFVQVVE 819
                 899**************999987 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.01
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldp 32 
                   nl+s+ +++g+ +eA+e + ++ e+++
  KKY18135.1 836 QANLASTFWNQGRWKEAEELFIQVMEIRK 864
                 689*********************99975 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.01
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekalel 30 
                   nl+s+ +++g+ +eA+e + +++e+
  KKY18135.1 878 QANLASTFWNQGRWKEAEELFVQVIEI 904
                 689*********************997 PP

  == domain 5  score: 11.6 bits;  conditional E-value: 0.00039
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekalel 30 
                   nl+siy+++g+ +eA+e + +++e+
  KKY18135.1 920 QANLASIYRNQGRWKEAEELFVQVIEM 946
                 689**********************98 PP

  == domain 6  score: 5.4 bits;  conditional E-value: 0.041
                 HHHHHHHHHHTT-HHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAke 22 
                   nl+s+y+++g+ eeA+e
  KKY18135.1 962 QANLASTYRNQGRWEEAEE 980
                 689**************97 PP

  == domain 7  score: -0.2 bits;  conditional E-value: 2.5
                  HHHHHHHHTT-HHHHHH CS
       TPR_8    6 nlgsiylklgdyeeAke 22  
                  nl+si +++g+ +eA++
  KKY18135.1 1006 NLASIFWDQGRWKEAEQ 1022
                  89********9999875 PP

  == domain 8  score: 1.8 bits;  conditional E-value: 0.55
                  HHHHHHHHHHTT-HHHHHHH CS
       TPR_8    4 yynlgsiylklgdyeeAkey 23  
                    nl+s+ +++g+ +eA+e+
  KKY18135.1 1046 QANLASTFWNQGRWKEAEEF 1065
                  689**********9999986 PP

  == domain 9  score: 1.1 bits;  conditional E-value: 0.91
                  HHHHHHHHHHTT-HHHHHH CS
       TPR_8    4 yynlgsiylklgdyeeAke 22  
                    nl+s+ +++g+ +eA+e
  KKY18135.1 1088 QANLASTFWNQGRWKEAEE 1106
                  689**********999987 PP

  == domain 10  score: 0.5 bits;  conditional E-value: 1.5
                  HHHHHHHHHTT-HHHHHH CS
       TPR_8    5 ynlgsiylklgdyeeAke 22  
                   nl+s+ +++g+ +eA+e
  KKY18135.1 1131 ANLASTFWNQGRWKEAEE 1148
                  79**********999987 PP

  == domain 11  score: 1.5 bits;  conditional E-value: 0.69
                  HHHHHHHHHTT-HHHHHH CS
       TPR_8    5 ynlgsiylklgdyeeAke 22  
                    l+s+y+++g+ +eA+e
  KKY18135.1 1173 ASLASTYRNQGRWKEAEE 1190
                  679*********999987 PP

  == domain 12  score: 1.0 bits;  conditional E-value: 1
                  HHHHHHHHHHTT-HHHHHH CS
       TPR_8    4 yynlgsiylklgdyeeAke 22  
                    nl+s+ +++g+ +eA+e
  KKY18135.1 1214 QANLASTFWNQGRWKEAEE 1232
                  689**********999987 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.19   1.2e+02       3      28 ..     751     776 ..     749     782 .. 0.81
   2 ?   -0.2   0.0       3.9   2.5e+03       7      30 ..     797     820 ..     795     826 .. 0.85
   3 ?    6.7   0.0     0.023        15       7      26 ..     839     858 ..     835     866 .. 0.87
   4 !    8.3   0.0    0.0071       4.5       7      30 ..     881     904 ..     877     910 .. 0.87
   5 ?    7.4   0.0     0.014       9.2       7      28 ..     923     944 ..     919     950 .. 0.87
   6 ?    4.0   0.1      0.17   1.1e+02       7      23 ..     965     981 ..     961     981 .. 0.89
   7 ?    3.1   0.0      0.34   2.2e+02       7      23 ..    1007    1023 ..    1003    1024 .. 0.92
   8 ?    3.1   0.0      0.33   2.1e+02       7      22 ..    1049    1064 ..    1045    1065 .. 0.89
   9 ?    3.9   0.0      0.19   1.2e+02       7      23 ..    1091    1107 ..    1087    1107 .. 0.89
  10 ?    3.9   0.0      0.19   1.2e+02       7      23 ..    1133    1149 ..    1129    1149 .. 0.89
  11 ?    4.1   0.0      0.16     1e+02       5      23 ..    1173    1191 ..    1170    1191 .. 0.89
  12 ?    3.9   0.0      0.19   1.2e+02       7      23 ..    1217    1233 ..    1213    1233 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.19
      TPR_14   3 allalaeallalGdpdeAiallrral 28 
                 a + ++++++a+G++++A +  + al
  KKY18135.1 751 AVYHIGQLYRAQGEYKKAQENVHLAL 776
                 78999************987665555 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 3.9
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l+ ++ ++G + +A++l+ +++++
  KKY18135.1 797 LGVIHIQQGFYHGAEELFVQVVET 820
                 667899***********9888876 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.023
      TPR_14   7 laeallalGdpdeAiallrr 26 
                 la+ ++++G+++eA++l+ +
  KKY18135.1 839 LASTFWNQGRWKEAEELFIQ 858
                 89**************9965 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.0071
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 la+ ++++G+++eA++l+ ++++ 
  KKY18135.1 881 LASTFWNQGRWKEAEELFVQVIEI 904
                 89****************988876 PP

  == domain 5  score: 7.4 bits;  conditional E-value: 0.014
      TPR_14   7 laeallalGdpdeAiallrral 28 
                 la++++++G+++eA++l+ +++
  KKY18135.1 923 LASIYRNQGRWKEAEELFVQVI 944
                 99***************97766 PP

  == domain 6  score: 4.0 bits;  conditional E-value: 0.17
      TPR_14   7 laeallalGdpdeAial 23 
                 la+ ++++G+++eA++l
  KKY18135.1 965 LASTYRNQGRWEEAEEL 981
                 99************986 PP

  == domain 7  score: 3.1 bits;  conditional E-value: 0.34
      TPR_14    7 laeallalGdpdeAial 23  
                  la++++ +G+++eA++l
  KKY18135.1 1007 LASIFWDQGRWKEAEQL 1023
                  89************986 PP

  == domain 8  score: 3.1 bits;  conditional E-value: 0.33
      TPR_14    7 laeallalGdpdeAia 22  
                  la+ ++++G+++eA++
  KKY18135.1 1049 LASTFWNQGRWKEAEE 1064
                  89************97 PP

  == domain 9  score: 3.9 bits;  conditional E-value: 0.19
      TPR_14    7 laeallalGdpdeAial 23  
                  la+ ++++G+++eA++l
  KKY18135.1 1091 LASTFWNQGRWKEAEEL 1107
                  89************986 PP

  == domain 10  score: 3.9 bits;  conditional E-value: 0.19
      TPR_14    7 laeallalGdpdeAial 23  
                  la+ ++++G+++eA++l
  KKY18135.1 1133 LASTFWNQGRWKEAEEL 1149
                  89************986 PP

  == domain 11  score: 4.1 bits;  conditional E-value: 0.16
      TPR_14    5 lalaeallalGdpdeAial 23  
                  + la+ ++++G+++eA++l
  KKY18135.1 1173 ASLASTYRNQGRWKEAEEL 1191
                  679*************986 PP

  == domain 12  score: 3.9 bits;  conditional E-value: 0.19
      TPR_14    7 laeallalGdpdeAial 23  
                  la+ ++++G+++eA++l
  KKY18135.1 1217 LASTFWNQGRWKEAEEL 1233
                  89************986 PP

>> SIR2_2  SIR2-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   9.5e-18   6.1e-15       3     127 ..     164     284 ..     162     302 .. 0.84
   2 ?   -2.6   0.0       8.7   5.6e+03      74     131 ..     342     401 ..     330     406 .. 0.64

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 9.5e-18
      SIR2_2   3 iiTTNYDdllekaleesgkpvsdaavskedlerelseaesgrtllyklhGslsrpesivltesdYeellarktpiptllkallrsk.slLfl..GySfs 98 
                 iiTTNYDdl+ + ++e+ + v+    +++ +       +++ + + ++hGs+++ +s+vl + dYe++  ++++i++ lk++++++  lLf+  G +++
  KKY18135.1 164 IITTNYDDLMDRHINEKPILVD---GTPAMQRF----FRKEMNGICHVHGSWWDSKSVVLDSMDYERVK-QNETIQQSLKNSMTGSeVLLFVgtGSGLR 254
                 9*************88777777...55555555....88**************************9988.7999******99976648889977778** PP

      SIR2_2  99 Dpnirelleellkesgn.arrhyaflpede 127
                 Dpn+ +ll  + k +++ a++h +++ + e
  KKY18135.1 255 DPNFGDLLAWAAKWNEGlAQTHCLLAHQQE 284
                 **************9999999977776665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 8.7
      SIR2_2  74 ktpiptllk.allrskslLflGyS.fsDpnirelleellkesgnarrhyaflpedekeee 131
                  ++++++l+ +  +s++ ++ G +  + +++   ++el ++++++++ +++ ++++++ e
  KKY18135.1 342 FKKLQQALDtNDATSRTAVLTGIGgCGKSQLALEFCELAESNETHHSILWIDASNPTATE 401
                 445555555455667777777776466778888888888888886666888887774444 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   6.1e-13   3.9e-10       2     171 ..     339     506 ..     338     529 .. 0.84

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 6.1e-13
                 HHHHHHHHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEEEEESXXHHHHHHHXXHHHHHCCCTTSSSS-STTSHHHHHHHHC CS
      NB-ARC   2 eksvekviekLlekdelqslvvalvGmgGvGKttlakqilnksdevegrFdsvawvvvsktdkseeiletilkeLslseddleekeeveslkrklvrlL 100
                 +++ +k+++ L+  ++  s    l G gG+GK+ la +  +  +e +++  s+ w+  s+    e+ + ti+ ++    ++    +   + ++ +  ++
  KKY18135.1 339 DEQFKKLQQALD-TNDATSRTAVLTGIGGCGKSQLALEFCEL-AESNETHHSILWIDASNPTATEQAFATIAGQIPGVPANVADIH---QTAEAVLDYI 432
                 567899******.7777779999***************9988.9999999*************************76655544444...4678999999 PP

                 CCT..TEEEEEEEE-SHHH..H.....HHHHCHTTSEEEEEESBCCCCCCS-S-EEEEEESS--HHHHHHHHHHC CS
      NB-ARC 101 ltk..rfllvlDDVweeed..wdkigvvlparenrlrvllTTRdeevanavsatsekievelLekdeawellenk 171
                  +   r ll++D   +  +   d i   +p +   +++l+T+R  + ++   + ++ i ++ ++kdea++l+++ 
  KKY18135.1 433 SRSnlRWLLIFDNFDDPSQfqGDGIRDFWPRKRGHCSILITSRLPSASELTPQ-QTGIDLTRMTKDEALDLFNQN 506
                 88889*******999998854578999***9999*************999888.9*****************864 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.046        29       7      24 ..     839     856 ..     838     864 .. 0.92
   2 ?    4.7   0.0      0.05        32       7      24 ..     881     898 ..     880     900 .. 0.93
   3 ?   -0.6   0.0       2.3   1.5e+03       7      24 ..     923     940 ..     922     942 .. 0.84
   4 ?   -0.4   0.0       1.9   1.2e+03       7      23 ..     965     981 ..     964     981 .. 0.91
   5 ?   -0.8   0.0       2.6   1.6e+03       7      23 ..    1007    1023 ..    1002    1025 .. 0.91
   6 ?    2.0   0.0      0.33   2.1e+02       7      23 ..    1049    1065 ..    1048    1065 .. 0.95
   7 ?    2.1   0.0      0.31     2e+02       7      23 ..    1091    1107 ..    1090    1107 .. 0.95
   8 ?    2.1   0.0      0.31     2e+02       7      23 ..    1133    1149 ..    1132    1149 .. 0.95
   9 ?   -0.4   0.0         2   1.3e+03       6      23 ..    1174    1191 ..    1174    1191 .. 0.94
  10 ?    2.1   0.0      0.31     2e+02       7      23 ..    1217    1233 ..    1216    1233 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.046
                 HHHHHHHTT-HHHHHHH. CS
       TPR_3   7 yAaefynkkkyqeArelf 24 
                 +A +f n+++  eA+elf
  KKY18135.1 839 LASTFWNQGRWKEAEELF 856
                 79***************5 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.05
                 HHHHHHHTT-HHHHHHH. CS
       TPR_3   7 yAaefynkkkyqeArelf 24 
                 +A +f n+++  eA+elf
  KKY18135.1 881 LASTFWNQGRWKEAEELF 898
                 79***************5 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 2.3
                 HHHHHHHTT-HHHHHHH. CS
       TPR_3   7 yAaefynkkkyqeArelf 24 
                 +A  + n+++  eA+elf
  KKY18135.1 923 LASIYRNQGRWKEAEELF 940
                 5677779**********5 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 1.9
                 HHHHHHHTT-HHHHHHH CS
       TPR_3   7 yAaefynkkkyqeArel 23 
                 +A ++ n+++ +eA+el
  KKY18135.1 965 LASTYRNQGRWEEAEEL 981
                 789999*********98 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 2.6
                  HHHHHHHTT-HHHHHHH CS
       TPR_3    7 yAaefynkkkyqeArel 23  
                  +A  f ++++  eA++l
  KKY18135.1 1007 LASIFWDQGRWKEAEQL 1023
                  7999***********99 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.33
                  HHHHHHHTT-HHHHHHH CS
       TPR_3    7 yAaefynkkkyqeArel 23  
                  +A +f n+++  eA+e+
  KKY18135.1 1049 LASTFWNQGRWKEAEEF 1065
                  79*************98 PP

  == domain 7  score: 2.1 bits;  conditional E-value: 0.31
                  HHHHHHHTT-HHHHHHH CS
       TPR_3    7 yAaefynkkkyqeArel 23  
                  +A +f n+++  eA+el
  KKY18135.1 1091 LASTFWNQGRWKEAEEL 1107
                  79*************98 PP

  == domain 8  score: 2.1 bits;  conditional E-value: 0.31
                  HHHHHHHTT-HHHHHHH CS
       TPR_3    7 yAaefynkkkyqeArel 23  
                  +A +f n+++  eA+el
  KKY18135.1 1133 LASTFWNQGRWKEAEEL 1149
                  79*************98 PP

  == domain 9  score: -0.4 bits;  conditional E-value: 2
                  HHHHHHHHTT-HHHHHHH CS
       TPR_3    6 syAaefynkkkyqeArel 23  
                  s+A ++ n+++  eA+el
  KKY18135.1 1174 SLASTYRNQGRWKEAEEL 1191
                  79999***********98 PP

  == domain 10  score: 2.1 bits;  conditional E-value: 0.31
                  HHHHHHHTT-HHHHHHH CS
       TPR_3    7 yAaefynkkkyqeArel 23  
                  +A +f n+++  eA+el
  KKY18135.1 1217 LASTFWNQGRWKEAEEL 1233
                  79*************98 PP

>> PaRep2a  PaRep2a protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.027        17      34      69 ..     815     851 ..     804     858 .. 0.86
   2 ?    6.1   0.0     0.015       9.5      34      70 ..     857     894 ..     850     904 .. 0.85
   3 ?    0.2   0.1      0.95   6.1e+02      35      69 ..     984    1019 ..     970    1023 .. 0.80
   4 ?    5.1   0.0      0.03        19      35      69 ..    1026    1061 ..    1021    1069 .. 0.88
   5 ?    4.8   0.0     0.037        24      35      69 ..    1068    1103 ..    1063    1111 .. 0.87
   6 ?    5.9   0.0     0.017        11      35      70 ..    1110    1146 ..    1106    1160 .. 0.85
   7 ?   -1.4   0.0       3.2     2e+03      35      69 ..    1152    1187 ..    1147    1196 .. 0.87
   8 ?    4.9   0.1     0.035        22      35      70 ..    1194    1230 ..    1184    1243 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.027
     PaRep2a  34 cqlakaikrelGgk.aellasefalrrafwweGewrG 69 
                  q+ ++ kr lG++  + l+s+  l  +fw +G w+ 
  KKY18135.1 815 VQVVETRKRVLGQEhPDTLTSQANLASTFWNQGRWKE 851
                 567778899999987899*****************86 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.015
     PaRep2a  34 cqlakaikrelGgk.aellasefalrrafwweGewrGk 70 
                  q++++ kr lG++  + l+s+  l  +fw +G w+ +
  KKY18135.1 857 IQVMEIRKRVLGQEhPDTLTSQANLASTFWNQGRWKEA 894
                 577888899999987899*****************865 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.95
     PaRep2a   35 qlakaikrelGgk.aellasefalrrafwweGewrG 69  
                  q++++ kr lG++    las   l   fw +G w+ 
  KKY18135.1  984 QVMDTRKRVLGEEhPYTLASIDNLASIFWDQGRWKE 1019
                  6677778888988556678888999*********86 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.03
     PaRep2a   35 qlakaikrelGgk.aellasefalrrafwweGewrG 69  
                  q++++ kr lG++  + l+s+  l  +fw +G w+ 
  KKY18135.1 1026 QVMEIRKRVLGQEhPDTLTSQANLASTFWNQGRWKE 1061
                  67778899999987899*****************86 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.037
     PaRep2a   35 qlakaikrelGgk.aellasefalrrafwweGewrG 69  
                  q++++ kr lG++  + l+s+  l  +fw +G w+ 
  KKY18135.1 1068 QVMEIGKRVLGQEhPDTLTSQANLASTFWNQGRWKE 1103
                  66778899999987899*****************86 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.017
     PaRep2a   35 qlakaikrelGgk.aellasefalrrafwweGewrGk 70  
                  q++++ kr lG++  + l+s+  l  +fw +G w+ +
  KKY18135.1 1110 QVMEIRKRVLGQEhPHTLISQANLASTFWNQGRWKEA 1146
                  66778899999987899*****************864 PP

  == domain 7  score: -1.4 bits;  conditional E-value: 3.2
     PaRep2a   35 qlakaikrelGgk.aellasefalrrafwweGewrG 69  
                  q+a++ kr lG++  + l+s+ +l  ++  +G w+ 
  KKY18135.1 1152 QVAEIRKRVLGQEhPDTLTSQASLASTYRNQGRWKE 1187
                  678888999999878999****************85 PP

  == domain 8  score: 4.9 bits;  conditional E-value: 0.035
     PaRep2a   35 qlakaikrelGgk.aellasefalrrafwweGewrGk 70  
                  q++++  r lG++  + l+s+  l  +fw +G w+ +
  KKY18135.1 1194 QVMEMSLRVLGQEhPDTLTSQANLASTFWNQGRWKEA 1230
                  67788889999987899*****************865 PP

>> TetR_C_20  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.67   4.3e+02      22      66 ..     829     874 ..     813     888 .. 0.80
   2 ?    2.0   0.0      0.38   2.4e+02      22      66 ..     871     916 ..     853     929 .. 0.82
   3 ?    0.0   0.0       1.6   1.1e+03      29      66 ..     921     958 ..     894     966 .. 0.77
   4 ?    0.4   0.0       1.2   7.7e+02      20      66 ..     953    1000 ..     934    1012 .. 0.73
   5 ?    3.6   0.0      0.13        81      32      66 ..    1008    1042 ..     996    1054 .. 0.85
   6 ?    4.3   0.0     0.075        48      25      66 ..    1043    1084 ..    1037    1096 .. 0.79
   7 ?    2.5   0.0      0.27   1.7e+02      25      66 ..    1085    1126 ..    1079    1138 .. 0.81
   8 ?    2.8   0.0      0.22   1.4e+02      31      66 ..    1133    1168 ..    1121    1178 .. 0.82
   9 ?    5.3   0.0     0.037        24      25      66 ..    1169    1210 ..    1163    1223 .. 0.80
  10 ?    3.3   0.0      0.15        97      25      66 ..    1211    1252 ..    1205    1255 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.67
                 SHH.HHHHHHHHHHH--TTT-GGGHHHHHHHHHHHHHHHT-SS--H CS
   TetR_C_20  22 ePa.LaeAmvrAlsaadasaaaevdrvaavvealllralgeeePte 66 
                 +P+ L++    A ++ + ++ +e++++  +v ++  r+lg+e+P+ 
  KKY18135.1 829 HPDtLTSQANLASTFWNQGRWKEAEELFIQVMEIRKRVLGQEHPDT 874
                 554245555568899999999**********************986 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.38
                 SHH.HHHHHHHHHHH--TTT-GGGHHHHHHHHHHHHHHHT-SS--H CS
   TetR_C_20  22 ePa.LaeAmvrAlsaadasaaaevdrvaavvealllralgeeePte 66 
                 +P+ L++    A ++ + ++ +e++++  +v +++ r+lg+e+P+ 
  KKY18135.1 871 HPDtLTSQANLASTFWNQGRWKEAEELFVQVIEIGKRVLGQEHPNT 916
                 554245555578899999999**********************975 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 1.6
                 HHHHHHH--TTT-GGGHHHHHHHHHHHHHHHT-SS--H CS
   TetR_C_20  29 mvrAlsaadasaaaevdrvaavvealllralgeeePte 66 
                    A +  + ++ +e++++  +v ++ +r+lg+e+P  
  KKY18135.1 921 ANLASIYRNQGRWKEAEELFVQVIEMRMRVLGQEHPHT 958
                 44566677778888999999999999999999999865 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 1.2
                  HTSHH.HHHHHHHHHHH--TTT-GGGHHHHHHHHHHHHHHHT-SS--H CS
   TetR_C_20   20 qrePa.LaeAmvrAlsaadasaaaevdrvaavvealllralgeeePte 66  
                  q++P+ L++    A +  + ++ +e+++++ +v +   r+lgee+P  
  KKY18135.1  953 QEHPHtLTSQANLASTYRNQGRWEEAEELRVQVMDTRKRVLGEEHPYT 1000
                  566762444445677788888999999999999999999999999854 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.13
                  HHHH--TTT-GGGHHHHHHHHHHHHHHHT-SS--H CS
   TetR_C_20   32 AlsaadasaaaevdrvaavvealllralgeeePte 66  
                  A ++ d ++ +e+++++ +v ++  r+lg+e+P+ 
  KKY18135.1 1008 ASIFWDQGRWKEAEQLDVQVMEIRKRVLGQEHPDT 1042
                  6778899999**********************986 PP

  == domain 6  score: 4.3 bits;  conditional E-value: 0.075
                  HHHHHHHHHHH--TTT-GGGHHHHHHHHHHHHHHHT-SS--H CS
   TetR_C_20   25 LaeAmvrAlsaadasaaaevdrvaavvealllralgeeePte 66  
                  L++    A ++ + ++ +e+++ + +v +++ r+lg+e+P+ 
  KKY18135.1 1043 LTSQANLASTFWNQGRWKEAEEFEVQVMEIGKRVLGQEHPDT 1084
                  44445568899999999**********************986 PP

  == domain 7  score: 2.5 bits;  conditional E-value: 0.27
                  HHHHHHHHHHH--TTT-GGGHHHHHHHHHHHHHHHT-SS--H CS
   TetR_C_20   25 LaeAmvrAlsaadasaaaevdrvaavvealllralgeeePte 66  
                  L++    A ++ + ++ +e+++++ +v ++  r+lg+e+P  
  KKY18135.1 1085 LTSQANLASTFWNQGRWKEAEELEVQVMEIRKRVLGQEHPHT 1126
                  44445568899999999**********************975 PP

  == domain 8  score: 2.8 bits;  conditional E-value: 0.22
                  HHHHH--TTT-GGGHHHHHHHHHHHHHHHT-SS--H CS
   TetR_C_20   31 rAlsaadasaaaevdrvaavvealllralgeeePte 66  
                   A ++ + ++ +e+++++ +v+++  r+lg+e+P+ 
  KKY18135.1 1133 LASTFWNQGRWKEAEELEVQVAEIRKRVLGQEHPDT 1168
                  47778888999**********************986 PP

  == domain 9  score: 5.3 bits;  conditional E-value: 0.037
                  HHHHHHHHHHH--TTT-GGGHHHHHHHHHHHHHHHT-SS--H CS
   TetR_C_20   25 LaeAmvrAlsaadasaaaevdrvaavvealllralgeeePte 66  
                  L++    A +  + ++ +e+++++ +v ++ lr+lg+e+P+ 
  KKY18135.1 1169 LTSQASLASTYRNQGRWKEAEELEVQVMEMSLRVLGQEHPDT 1210
                  55556778888999999**********************986 PP

  == domain 10  score: 3.3 bits;  conditional E-value: 0.15
                  HHHHHHHHHHH--TTT-GGGHHHHHHHHHHHHHHHT-SS--H CS
   TetR_C_20   25 LaeAmvrAlsaadasaaaevdrvaavvealllralgeeePte 66  
                  L++    A ++ + ++ +e+++++ +v+++  r+lg+e+P+ 
  KKY18135.1 1211 LTSQANLASTFWNQGRWKEAEELEVQVAEMRKRVLGQEHPDT 1252
                  44445568899999999**********************975 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.29   1.8e+02      19      59 ..     828     868 ..     827     889 .. 0.86
   2 ?    0.2   0.1       1.3   8.4e+02      19      59 ..     954     994 ..     947    1004 .. 0.83
   3 ?    5.4   0.1     0.029        19      20      60 ..     997    1037 ..     995    1057 .. 0.83
   4 !    8.0   0.1    0.0048         3      19      61 ..    1080    1122 ..    1079    1128 .. 0.87
   5 !   10.2   0.1   0.00095      0.61      19      59 ..    1122    1162 ..    1119    1174 .. 0.88
   6 !    8.8   0.1    0.0026       1.7      19      59 ..    1206    1246 ..    1189    1254 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.29
                  HTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHT CS
  Trans_reg_C  19 enpgrvvsreeLleevwgededvddrtvdvhisrLRkkLed 59 
                  e+p+   s+++L +  w++    +++ +  ++  +Rk +  
   KKY18135.1 828 EHPDTLTSQANLASTFWNQGRWKEAEELFIQVMEIRKRVLG 868
                  6889999*****************************98765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.3
                  HTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHT CS
  Trans_reg_C  19 enpgrvvsreeLleevwgededvddrtvdvhisrLRkkLed 59 
                  e+p+   s+++L +   ++    +++ ++v++  +Rk +  
   KKY18135.1 954 EHPHTLTSQANLASTYRNQGRWEEAEELRVQVMDTRKRVLG 994
                  577777888888888888888999************98755 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.029
                   TTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTT CS
  Trans_reg_C   20 npgrvvsreeLleevwgededvddrtvdvhisrLRkkLedd 60  
                   +p    s ++L +  w++    +++ +dv++  +Rk +  +
   KKY18135.1  997 HPYTLASIDNLASIFWDQGRWKEAEQLDVQVMEIRKRVLGQ 1037
                   566667889999999********************987653 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0048
                   HTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTT CS
  Trans_reg_C   19 enpgrvvsreeLleevwgededvddrtvdvhisrLRkkLedde 61  
                   e+p+   s+++L +  w++    +++ ++v++  +Rk +  +e
   KKY18135.1 1080 EHPDTLTSQANLASTFWNQGRWKEAEELEVQVMEIRKRVLGQE 1122
                   6899999*****************************9876644 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.00095
                   HTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHT CS
  Trans_reg_C   19 enpgrvvsreeLleevwgededvddrtvdvhisrLRkkLed 59  
                   e+p+  +s+++L +  w++    +++ ++v+++ +Rk +  
   KKY18135.1 1122 EHPHTLISQANLASTFWNQGRWKEAEELEVQVAEIRKRVLG 1162
                   699999******************************98765 PP

  == domain 6  score: 8.8 bits;  conditional E-value: 0.0026
                   HTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHT CS
  Trans_reg_C   19 enpgrvvsreeLleevwgededvddrtvdvhisrLRkkLed 59  
                   e+p+   s+++L +  w++    +++ ++v+++ +Rk +  
   KKY18135.1 1206 EHPDTLTSQANLASTFWNQGRWKEAEELEVQVAEMRKRVLG 1246
                   6888889999**************************98755 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       6.6   4.2e+03      13      26 ..     647     660 ..     645     662 .. 0.86
   2 ?   -1.0   0.0       4.4   2.8e+03      12      25 ..     803     816 ..     801     819 .. 0.83
   3 ?    4.0   0.0      0.11        71      12      25 ..     845     858 ..     839     862 .. 0.83
   4 ?    4.9   0.0     0.057        36      12      29 ..     887     904 ..     881     905 .. 0.83
   5 ?    6.9   0.0     0.013       8.4       8      29 ..     925     946 ..     922     948 .. 0.83
   6 ?    2.0   0.0      0.47     3e+02      10      22 ..     969     981 ..     964     985 .. 0.84
   7 ?   -1.1   0.0       4.6   2.9e+03      12      22 ..    1097    1107 ..    1091    1107 .. 0.85
   8 ?   -1.2   0.0       5.1   3.2e+03      13      22 ..    1140    1149 ..    1134    1149 .. 0.86
   9 ?    0.6   0.0       1.3   8.6e+02       8      22 ..    1177    1191 ..    1174    1195 .. 0.85
  10 ?   -1.1   0.0       4.6   2.9e+03      12      22 ..    1223    1233 ..    1217    1233 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 6.6
         PPR  13 nGkleeAlelfkeM 26 
                 + k+e++++ f++M
  KKY18135.1 647 KLKFEKVFQTFCRM 660
                 5689*********9 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 4.4
         PPR  12 knGkleeAlelfke 25 
                 + G ++ A+elf +
  KKY18135.1 803 QQGFYHGAEELFVQ 816
                 7899********76 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.11
         PPR  12 knGkleeAlelfke 25 
                   G+++eA+elf +
  KKY18135.1 845 NQGRWKEAEELFIQ 858
                 57**********76 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.057
         PPR  12 knGkleeAlelfkeMkek 29 
                   G+++eA+elf + +e 
  KKY18135.1 887 NQGRWKEAEELFVQVIEI 904
                 57**********988776 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.013
         PPR   8 sgycknGkleeAlelfkeMkek 29 
                 s y   G+++eA+elf + +e+
  KKY18135.1 925 SIYRNQGRWKEAEELFVQVIEM 946
                 779999**********887765 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.47
         PPR  10 ycknGkleeAlel 22 
                 y   G++eeA+el
  KKY18135.1 969 YRNQGRWEEAEEL 981
                 7789*******98 PP

  == domain 7  score: -1.1 bits;  conditional E-value: 4.6
         PPR   12 knGkleeAlel 22  
                    G+++eA+el
  KKY18135.1 1097 NQGRWKEAEEL 1107
                  57*******97 PP

  == domain 8  score: -1.2 bits;  conditional E-value: 5.1
         PPR   13 nGkleeAlel 22  
                   G+++eA+el
  KKY18135.1 1140 QGRWKEAEEL 1149
                  79******97 PP

  == domain 9  score: 0.6 bits;  conditional E-value: 1.3
         PPR    8 sgycknGkleeAlel 22  
                  s y   G+++eA+el
  KKY18135.1 1177 STYRNQGRWKEAEEL 1191
                  668889*******98 PP

  == domain 10  score: -1.1 bits;  conditional E-value: 4.6
         PPR   12 knGkleeAlel 22  
                    G+++eA+el
  KKY18135.1 1223 NQGRWKEAEEL 1233
                  57*******97 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.2   2.9e-08   1.9e-05       2      52 ..     335     387 ..     334     461 .. 0.69

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 2.9e-08
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekd...g 52 
                 +v R+e+ ++L++al++  +  ++  +l+G  G+GKs l+ e+ + +e +   +
  KKY18135.1 335 FVSRDEQFKKLQQALDTNDAT-SRTAVLTGIGGCGKSQLALEFCELAESNethH 387
                 899************955555.59999*****************7666553321 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2      0.15        94      17      34 .]     753     770 ..     750     770 .. 0.88
   2 ?   -1.0   0.0       4.8     3e+03      17      34 .]     837     854 ..     828     854 .. 0.72
   3 ?   -1.0   0.0       4.8     3e+03      17      34 .]     879     896 ..     870     896 .. 0.72
   4 ?    7.3   0.0     0.011       6.9      17      34 .]     921     938 ..     912     938 .. 0.88
   5 ?    7.3   0.1     0.011       6.9      17      34 .]     963     980 ..     960     980 .. 0.92
   6 ?   -1.0   0.0       4.8     3e+03      17      34 .]    1047    1064 ..    1038    1064 .. 0.72
   7 ?   -1.0   0.0       4.8     3e+03      17      34 .]    1089    1106 ..    1080    1106 .. 0.72
   8 ?   -1.8   0.0       8.6   5.5e+03      18      34 .]    1132    1148 ..    1129    1148 .. 0.84
   9 ?    4.6   0.0     0.077        49      18      34 .]    1174    1190 ..    1170    1190 .. 0.91
  10 ?   -1.0   0.0       4.8     3e+03      17      34 .]    1215    1232 ..    1206    1232 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.15
      TPR_17  17 nnLAelllknGdlmtArq 34 
                 +  ++l++ +G++++A++
  KKY18135.1 753 YHIGQLYRAQGEYKKAQE 770
                 6789************96 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 4.8
      TPR_17  17 nnLAelllknGdlmtArq 34 
                  nLA ++ ++G++++A++
  KKY18135.1 837 ANLASTFWNQGRWKEAEE 854
                 35666666*******986 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 4.8
      TPR_17  17 nnLAelllknGdlmtArq 34 
                  nLA ++ ++G++++A++
  KKY18135.1 879 ANLASTFWNQGRWKEAEE 896
                 35666666*******986 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.011
      TPR_17  17 nnLAelllknGdlmtArq 34 
                  nLA +++++G++++A++
  KKY18135.1 921 ANLASIYRNQGRWKEAEE 938
                 69**************96 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.011
      TPR_17  17 nnLAelllknGdlmtArq 34 
                  nLA +++++G++++A++
  KKY18135.1 963 ANLASTYRNQGRWEEAEE 980
                 59**************96 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 4.8
      TPR_17   17 nnLAelllknGdlmtArq 34  
                   nLA ++ ++G++++A++
  KKY18135.1 1047 ANLASTFWNQGRWKEAEE 1064
                  35666666*******986 PP

  == domain 7  score: -1.0 bits;  conditional E-value: 4.8
      TPR_17   17 nnLAelllknGdlmtArq 34  
                   nLA ++ ++G++++A++
  KKY18135.1 1089 ANLASTFWNQGRWKEAEE 1106
                  35666666*******986 PP

  == domain 8  score: -1.8 bits;  conditional E-value: 8.6
      TPR_17   18 nLAelllknGdlmtArq 34  
                  nLA ++ ++G++++A++
  KKY18135.1 1132 NLASTFWNQGRWKEAEE 1148
                  7888888*******986 PP

  == domain 9  score: 4.6 bits;  conditional E-value: 0.077
      TPR_17   18 nLAelllknGdlmtArq 34  
                   LA +++++G++++A++
  KKY18135.1 1174 SLASTYRNQGRWKEAEE 1190
                  69*************96 PP

  == domain 10  score: -1.0 bits;  conditional E-value: 4.8
      TPR_17   17 nnLAelllknGdlmtArq 34  
                   nLA ++ ++G++++A++
  KKY18135.1 1215 ANLASTFWNQGRWKEAEE 1232
                  35666666*******986 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.6     0.047        30      18      45 ..     744     771 ..     726     785 .. 0.71
   2 ?    0.7   0.0      0.96   6.1e+02      35      49 ..     845     859 ..     804     898 .. 0.61
   3 ?    5.4   0.0     0.033        21       3      48 ..     889     942 ..     887     981 .. 0.70
   4 ?    3.5   0.0      0.13        83       2      53 ..     930     990 ..     929    1023 .. 0.64
   5 ?   -1.5   0.0       4.8     3e+03      20      44 ..    1082    1106 ..    1055    1117 .. 0.67
   6 ?    3.5   0.0      0.13        86      17      45 ..    1163    1191 ..    1139    1233 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.047
                 HHH--HHHHHHHHHHHHHTT-HHHHHHH CS
      ANAPC3  18 aetespedayllAlclylngqykrAyel 45 
                 +++  ++++y  ++ +  +g+yk+A+e 
  KKY18135.1 744 YDAVLLKAVYHIGQLYRAQGEYKKAQEN 771
                 3444455677779************975 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.96
                 HTT-HHHHHHHHHCT CS
      ANAPC3  35 lngqykrAyellrka 49 
                 ++g++k+A el+ + 
  KKY18135.1 845 NQGRWKEAEELFIQV 859
                 555555555544333 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.033
                 T-HHHHHHHHHHHH.........HHH--HHHHHHHHHHHHHTT-HHHHHHHHHC CS
      ANAPC3   3 nnyknAiflaerll........aaetespedayllAlclylngqykrAyellrk 48 
                 +++k+A+ l+  +         + +++ + +   lA  + ++g++k+A el+ +
  KKY18135.1 889 GRWKEAEELFVQVIeigkrvlgQEHPNTLTSQANLASIYRNQGRWKEAEELFVQ 942
                 556666666666665554444446666667777789999999999999888755 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.13
                 TT-HHHHHHHHHHHH.........HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHH CS
      ANAPC3   2 qnnyknAiflaerll........aaetespedayllAlclylngqykrAyellrka.klns 53 
                 q+++k+A+ l+  +         + +++ + +   lA ++ ++g++++A el  +  ++++
  KKY18135.1 930 QGRWKEAEELFVQVIemrmrvlgQEHPHTLTSQANLASTYRNQGRWEEAEELRVQVmDTRK 990
                 566667777666666666555555778888888889*************988666545544 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 4.8
                  H--HHHHHHHHHHHHHTT-HHHHHH CS
      ANAPC3   20 tespedayllAlclylngqykrAye 44  
                  ++ + +   lA ++ ++g++k+A e
  KKY18135.1 1082 PDTLTSQANLASTFWNQGRWKEAEE 1106
                  4444455557888888888888866 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.13
                  .HHH--HHHHHHHHHHHHHTT-HHHHHHH CS
      ANAPC3   17 aaetespedayllAlclylngqykrAyel 45  
                  + +++ + +   lA ++ ++g++k+A el
  KKY18135.1 1163 QEHPDTLTSQASLASTYRNQGRWKEAEEL 1191
                  456777777778999*********99875 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1    0.0011      0.73       2      29 ..     751     782 ..     750     783 .. 0.90
   2 ?    0.3   0.0       2.3   1.4e+03       5      26 ..     838     859 ..     835     862 .. 0.84
   3 ?    2.4   0.0      0.47     3e+02       5      28 ..     880     903 ..     877     904 .. 0.89
   4 ?    6.2   0.0     0.028        18       5      28 ..     922     945 ..     919     946 .. 0.91
   5 ?    2.6   0.1       0.4   2.5e+02       5      21 ..     964     980 ..     961     981 .. 0.87
   6 ?    0.4   0.0       2.1   1.3e+03       6      21 ..    1175    1190 ..    1173    1210 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHHHHHHHHH....HHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAle....alerlike 29 
                 A y+++++yr++g++ kA e    ale++ik+
  KKY18135.1 751 AVYHIGQLYRAQGEYKKAQEnvhlALEECIKN 782
                 78*****************9888888888876 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerl 26 
                 +la  + ++g++ +A e++ ++
  KKY18135.1 838 NLASTFWNQGRWKEAEELFIQV 859
                 689999999******9999665 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.47
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlik 28 
                 +la  + ++g++ +A e++ ++i+
  KKY18135.1 880 NLASTFWNQGRWKEAEELFVQVIE 903
                 689999999**********99986 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.028
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlik 28 
                 +la  yr++g++ +A e++ ++i+
  KKY18135.1 922 NLASIYRNQGRWKEAEELFVQVIE 945
                 7999***************99986 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.4
                 HHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAle 21 
                 +la  yr++g++++A e
  KKY18135.1 964 NLASTYRNQGRWEEAEE 980
                 7999**********976 PP

  == domain 6  score: 0.4 bits;  conditional E-value: 2.1
                  HHHHHHHHHHHHHHHH CS
       TPR_6    6 lalsyrklgdtdkAle 21  
                  la  yr++g++ +A e
  KKY18135.1 1175 LASTYRNQGRWKEAEE 1190
                  6888999999999977 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.6e-06     0.003       1     128 [.     357     475 ..     357     505 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.6e-06
                 SCEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-C.......CHHHHCCSCCCEEEEEE-STT CS
       NACHT   1 rlvilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlpepaapvse.......vwavllelperlLlilDglDe 92 
                 r+ +l+G  G+GK+ L+ ++++++ +++  +     ++++  +  +  +       +++ q p   a+v         v  ++ +   r Lli+D +D+
  KKY18135.1 357 RTAVLTGIGGCGKSQLALEFCELAESNETHH----SILWIDASNPTATE---QAFATIAGQIPGVPANVADihqtaeaVLDYISRSNLRWLLIFDNFDD 448
                 6889*****************9988888655....46777776666665...458889999999999988877777888888888888888******** PP

                 -SS-TCH................HHHHHCTTTTT--EEEEEEE CS
       NACHT  93 lvtdlgq.......kekqpvrtlLselirkkllpeasllltvr 128
                  ++  g         +                   +s+l+t+r
  KKY18135.1 449 PSQFQGDgirdfwpRK----------------RGHCSILITSR 475
                 9987766444443322................33333444443 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   5.4e-05     0.035       1     126 [.     335     445 ..     335     458 .. 0.66
   2 ?   -0.9   0.0         2   1.3e+03     173     224 ..     475     525 ..     469     533 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.4e-05
    ATPase_2   1 FfdRekelkeleeilere..pneiyfiYGpegsGKtaLlkeiienledkdk..yviyyialreesiskldefieeeeekkklekalgiavpkaeleeil 95 
                 F+ R++  k+l++ l+++  +++  +++G  g+GK++L  e+ e  e+ +    +++++a +  +++++               +++ ++p + +    
  KKY18135.1 335 FVSRDEQFKKLQQALDTNdaTSRTAVLTGIGGCGKSQLALEFCELAESNEThhSILWIDASNPTATEQA-------------FATIAGQIPGVPA---- 416
                 899***********99873367899*******************9976555213333333332222222.............3334455555555.... PP

    ATPase_2  96 keksklvfkaielllekikkkgkkiiiiiDe 126
                   + +++ +  e++l+ i+++  +  +i+D 
  KKY18135.1 417 --NVADIHQTAEAVLDYISRSNLRWLLIFDN 445
                 ..34566666666666666666666666665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2
    ATPase_2 173 rvyneselegrhkyilvddldketalnflkegfkeleelskedfeeiyryvG 224
                 r+ + sel  ++++i+++ ++k++al+++++  ++  +++  + +++++ +G
  KKY18135.1 475 RLPSASELTPQQTGIDLTRMTKDEALDLFNQN-EDGTDQNHLENKQVVQRLG 525
                 566789999999****************9994.5557776666666666665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   7.4e-05     0.047       7     102 ..     358     448 ..     353     473 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.4e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqh 102
                   v+tG  G+GK+ l+ ++ e ++      e + +++ ++++++t  ++ +  ++ ++     +  ++ ++  ea+ +++++   + lli D+++ 
  KKY18135.1 358 TAVLTGIGGCGKSQLALEFCELAESN----ETHHSILWIDASNPTATEQAFATIAGQIPGVPAN-VADIHQTAEAVLDYISRSNLRWLLIFDNFDD 448
                 579*******************9644....3589999********7777777777777766666.69999999**********9999******996 PP

>> PepSY_like  Putative beta-lactamase-inhibitor-like, PepSY-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.79   5.1e+02      14      25 ..     842     853 ..     835     869 .. 0.76
   2 ?    0.7   0.4       1.3   8.2e+02      14      25 ..     884     895 ..     877     929 .. 0.85
   3 ?    2.9   0.0      0.26   1.7e+02      14      40 ..    1010    1034 ..    1000    1037 .. 0.82
   4 ?    2.5   0.1      0.34   2.2e+02      14      39 ..    1052    1075 ..    1044    1079 .. 0.78
   5 ?    3.1   0.1      0.22   1.4e+02      14      40 ..    1094    1118 ..    1086    1121 .. 0.81
   6 ?    4.3   0.0     0.091        58      14      41 ..    1136    1161 ..    1128    1165 .. 0.86
   7 ?    2.6   0.0      0.32     2e+02      14      39 ..    1220    1243 ..    1213    1247 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.79
                 EE-TTS-EEEEE CS
  PepSY_like  14 eFdkkGeWkeie 25 
                  F+++G Wke e
  KKY18135.1 842 TFWNQGRWKEAE 853
                 6*********98 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 1.3
                 EE-TTS-EEEEE CS
  PepSY_like  14 eFdkkGeWkeie 25 
                  F+++G Wke e
  KKY18135.1 884 TFWNQGRWKEAE 895
                 6*********98 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.26
                  EE-TTS-EEEEE-TTSEESGGGS-HHH CS
  PepSY_like   14 eFdkkGeWkeiegkkteiplsilpkav 40  
                   F+++G Wke e  + +++   + k v
  KKY18135.1 1010 IFWDQGRWKEAE--QLDVQVMEIRKRV 1034
                  6**********9..8888877777766 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.34
                  EE-TTS-EEEEE-TTSEESGGGS-HH CS
  PepSY_like   14 eFdkkGeWkeiegkkteiplsilpka 39  
                   F+++G Wke e  + e++   + k 
  KKY18135.1 1052 TFWNQGRWKEAE--EFEVQVMEIGKR 1075
                  6*********99..777776666555 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.22
                  EE-TTS-EEEEE-TTSEESGGGS-HHH CS
  PepSY_like   14 eFdkkGeWkeiegkkteiplsilpkav 40  
                   F+++G Wke e  + e++   + k v
  KKY18135.1 1094 TFWNQGRWKEAE--ELEVQVMEIRKRV 1118
                  6*********99..7777777777766 PP

  == domain 6  score: 4.3 bits;  conditional E-value: 0.091
                  EE-TTS-EEEEE-TTSEESGGGS-HHHH CS
  PepSY_like   14 eFdkkGeWkeiegkkteiplsilpkavl 41  
                   F+++G Wke e  + e++ + + k vl
  KKY18135.1 1136 TFWNQGRWKEAE--ELEVQVAEIRKRVL 1161
                  6***********..89999999988875 PP

  == domain 7  score: 2.6 bits;  conditional E-value: 0.32
                  EE-TTS-EEEEE-TTSEESGGGS-HH CS
  PepSY_like   14 eFdkkGeWkeiegkkteiplsilpka 39  
                   F+++G Wke e  + e++ + + k 
  KKY18135.1 1220 TFWNQGRWKEAE--ELEVQVAEMRKR 1243
                  6*********99..677766666555 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.9     0.078        50       1      13 [.     756     768 ..     756     771 .. 0.90
   2 ?   -2.5   0.0       6.5   4.2e+03       7      23 ..     888     904 ..     880     904 .. 0.78
   3 ?    1.4   0.0      0.41   2.6e+02       2      22 ..     925     945 ..     924     947 .. 0.81
   4 ?    0.5   0.1       0.8   5.1e+02       3      13 ..     968     978 ..     966     980 .. 0.90
   5 ?   -2.4   0.0       6.1   3.9e+03       4      13 ..    1179    1188 ..    1177    1188 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.078
      TPR_11   1 GdayyeqGkyeeA 13 
                 G++y++qG+y++A
  KKY18135.1 756 GQLYRAQGEYKKA 768
                 899********99 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.5
      TPR_11   7 qGkyeeAieaYkkAlkl 23 
                 qG+++eA e + + +++
  KKY18135.1 888 QGRWKEAEELFVQVIEI 904
                 89999998887777775 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.41
      TPR_11   2 dayyeqGkyeeAieaYkkAlk 22 
                  +y+ qG+++eA e + + ++
  KKY18135.1 925 SIYRNQGRWKEAEELFVQVIE 945
                 58**********777777665 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.8
      TPR_11   3 ayyeqGkyeeA 13 
                  y+ qG++eeA
  KKY18135.1 968 TYRNQGRWEEA 978
                 6999******9 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 6.1
      TPR_11    4 yyeqGkyeeA 13  
                  y+ qG+++eA
  KKY18135.1 1179 YRNQGRWKEA 1188
                  999******9 PP

>> kleA_kleC  Uncharacterized KorC regulated protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.96   6.1e+02      31      50 ..     850     869 ..     847     878 .. 0.89
   2 ?    1.2   0.0      0.76   4.9e+02      31      50 ..     934     953 ..     928     964 .. 0.87
   3 ?   -1.0   0.0       3.6   2.3e+03      31      48 ..     976     993 ..     969    1000 .. 0.72
   4 ?   -1.2   0.0       4.2   2.7e+03      31      49 ..    1018    1036 ..    1015    1040 .. 0.86
   5 ?    2.4   0.0       0.3   1.9e+02      31      50 ..    1102    1121 ..    1099    1131 .. 0.89
   6 ?    4.3   0.1     0.081        52      31      50 ..    1144    1163 ..    1141    1175 .. 0.89
   7 ?   -1.9   0.0       6.9   4.4e+03      31      47 ..    1186    1202 ..    1177    1207 .. 0.77
   8 ?    4.2   0.2     0.084        54      31      49 ..    1228    1246 ..    1225    1249 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.96
   kleA_kleC  31 aeAeeLvrqaeeLRakvyee 50 
                 +eAeeL  q+ e+R++v+ +
  KKY18135.1 850 KEAEELFIQVMEIRKRVLGQ 869
                 79*************99865 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.76
   kleA_kleC  31 aeAeeLvrqaeeLRakvyee 50 
                 +eAeeL  q+ e+R++v+ +
  KKY18135.1 934 KEAEELFVQVIEMRMRVLGQ 953
                 79*************99865 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 3.6
   kleA_kleC  31 aeAeeLvrqaeeLRakvy 48 
                 +eAeeL  q+ + R++v+
  KKY18135.1 976 EEAEELRVQVMDTRKRVL 993
                 567777777777776665 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 4.2
   kleA_kleC   31 aeAeeLvrqaeeLRakvye 49  
                  +eAe+L  q+ e+R++v+ 
  KKY18135.1 1018 KEAEQLDVQVMEIRKRVLG 1036
                  789***********99975 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.3
   kleA_kleC   31 aeAeeLvrqaeeLRakvyee 50  
                  +eAeeL+ q+ e+R++v+ +
  KKY18135.1 1102 KEAEELEVQVMEIRKRVLGQ 1121
                  79*************99865 PP

  == domain 6  score: 4.3 bits;  conditional E-value: 0.081
   kleA_kleC   31 aeAeeLvrqaeeLRakvyee 50  
                  +eAeeL+ q++e+R++v+ +
  KKY18135.1 1144 KEAEELEVQVAEIRKRVLGQ 1163
                  79*************99865 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 6.9
   kleA_kleC   31 aeAeeLvrqaeeLRakv 47  
                  +eAeeL+ q+ e+  +v
  KKY18135.1 1186 KEAEELEVQVMEMSLRV 1202
                  68999999988876665 PP

  == domain 8  score: 4.2 bits;  conditional E-value: 0.084
   kleA_kleC   31 aeAeeLvrqaeeLRakvye 49  
                  +eAeeL+ q++e+R++v+ 
  KKY18135.1 1228 KEAEELEVQVAEMRKRVLG 1246
                  79*************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 1.10u 0.33s 00:00:01.43 Elapsed: 00:00:00.62
# Mc/sec: 6115.09
//
Query:       KKY18136.1  [L=744]
Description: putative dolichyl-phosphate-mannose-protein mannosyltransferase 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-87  292.6  15.7    2.3e-87  292.6  15.7    2.2  2  PMT       Dolichyl-phosphate-mannose-protein mannosyltransfer
    2.7e-64  216.4  13.7    2.7e-64  216.4  13.7    2.4  2  PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltra
    7.4e-35  120.5   1.0    1.2e-34  119.8   1.0    1.2  1  MIR       MIR domain
  ------ inclusion threshold ------
      0.013   15.7  12.9      0.013   15.7  12.9    2.7  3  PMT_2     Dolichyl-phosphate-mannose-protein mannosyltransfer


Domain annotation for each model (and alignments):
>> PMT  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.6  15.7   5.2e-91   2.3e-87       2     244 ..      68     310 ..      67     311 .. 0.99
   2 ?   -0.9   0.7      0.22   9.8e+02     187     240 ..     613     670 ..     609     674 .. 0.70

  Alignments for each domain:
  == domain 1  score: 292.6 bits;  conditional E-value: 5.2e-91
         PMT   2 iltllallirlwrlslpnsvvfdevhfgkfasdYlehsffmdvhpplgkmllalggyLagkdgnftfesigaeyypenvpyvslRlfsallgslivplv 100
                 i+t+l++++r+w+++l   v++de+hfgkf+s Yl+++f++dvhpplgkml++l+gyLag++g+f+f+s   e+ype  +  ++R+f+a++g++++pl+
  KKY18136.1  68 IFTALSFFTRMWKIGLSDIVTWDEAHFGKFGSHYLKREFYFDVHPPLGKMLVGLSGYLAGYNGSFEFKSG--EKYPEDLDFTFMRVFNAFFGAVCTPLA 164
                 789*******************************************************************..9************************** PP

         PMT 101 yltllelgfskltallaallvllenslitlsryilldspLlfftllsmyclvkfe..rkapfsrswwlwllltgvalglavsvKwvglftvllvgllli 197
                 y+t++el+f++ t++l +l+vl+ens+ t+sr+illds+Ll ft ++++c+ +f+  ++++ s +w++wl+ltgv++g+++svKwvg+f ++lvg++++
  KKY18136.1 165 YYTARELNFRRATVWLVTLMVLFENSYATISRFILLDSMLLCFTCTTVLCWARFHrlQYKTWSVEWFAWLCLTGVSIGCVCSVKWVGAFCTALVGIYTA 263
                 ********************************************************99999************************************** PP

         PMT 198 welwqllgdkslllksivkhllaralaliviPvtlylavftvhfwll 244
                  +lw+++gd+ +++++   h+ ar++ liviP+++y++ f+vhf +l
  KKY18136.1 264 EDLWNKFGDLRMSKVELGAHVGARVFGLIVIPALVYMFSFWVHFLIL 310
                 ********************************************876 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.22
         PMT 187 ftvllvgllliwelwqllgdkslllksi....vkhllaralaliviPvtlylavftvh 240
                 ++++ +++++    wq+ +d++ +++        ++ +   +l  +P+   + v +vh
  KKY18136.1 613 LAFSGFLVVWYLIRWQRGYDELSSKDIDqihyAGIYPVIGWVLHYVPFIAMARVTYVH 670
                 5677788888888899999888888755544433444556677777877777777777 PP

>> PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   2.7      0.52   2.3e+03     154     179 ..     277     307 ..     177     321 .. 0.72
   2 !  216.4  13.7   6.1e-68   2.7e-64       1     199 []     543     740 ..     543     740 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.52
    PMT_4TMC 154 k.....klvklivvvvllvlviavFiffspl 179
                 k     ++ ++++ ++++ +++++F f+  +
  KKY18136.1 277 KvelgaHVGARVFGLIVIPALVYMFSFWVHF 307
                 2455656667777777888888888888765 PP

  == domain 2  score: 216.4 bits;  conditional E-value: 6.1e-68
    PMT_4TMC   1 Flkkflelqkamltsnnaltes....hpyaSepyeWplllrgisywtkneekkqiyllGNpvlwwlstiallvfvllllalllrrqrgvkdl.eeeetr 94 
                 F+++f++l++am+tsnnal+++    +++aS++++Wp+l+ g++++++++++ +++llGNp+++w st al++  +l++++l+r+qrg+++l +++ ++
  KKY18136.1 543 FFRDFIHLNVAMMTSNNALVPDpdkqDDLASQWWQWPILNVGLRMCSWDDNTVKYFLLGNPIVYWGSTTALAFSGFLVVWYLIRWQRGYDELsSKDIDQ 641
                 9********************559********************************************************************7677777 PP

    PMT_4TMC  95 llnsglflllgwalhylPfflmgRvlflhhYlpAllfailllaalldfllkslkkslkkkklvklivvvvllvlviavFiffspltyGlpgtseevkkl 193
                 ++++g+++++gw+lhy+Pf+ m+Rv+++hhY+pAl+fail +++++d+++++l++      +v++ + +vl++++i+ Fi+f+ +++G++g++ e+++l
  KKY18136.1 642 IHYAGIYPVIGWVLHYVPFIAMARVTYVHHYYPALYFAILSAGFVVDWTTQKLNN------KVRWGLHTVLYIAIIGLFIVFKDIVFGMEGSNLEWRYL 734
                 ************************************************9844443......569*********************************** PP

    PMT_4TMC 194 kwlssW 199
                 +w+++W
  KKY18136.1 735 RWFDKW 740
                 ****** PP

>> MIR  MIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.8   1.0   2.6e-38   1.2e-34      11     184 ..     358     519 ..     357     531 .. 0.94

  Alignments for each domain:
  == domain 1  score: 119.8 bits;  conditional E-value: 2.6e-38
         MIR  11 LfHshqdeyltiseqqqkqevflritlypsadaanssraLWeievvqkd.....awrgglikwgkvyRlkHlaTgryLaseeekksplseseddqkevs 104
                 L Hsh ++y+++s+qqq       it+y+++da+n+    W   + + +     +   +++++ +v+Rl H +Tgr+L+s+   ++p++   +++ evs
  KKY18136.1 358 LLHSHVQTYPEGSTQQQ-------ITCYHHKDANND----WFFYPNRNEpefdpEGPLKYVSDKSVIRLLHAQTGRNLHSHTV-SAPIT---KQDYEVS 441
                 78***************.......************....********9766555599*************************.****9...6799*** PP

         MIR 105 ayglegfegdnDkveifekksttgmksaklvprdsyvrlqHvvtgcwLhstsvklkkekfekvqqkvicakekedkeala 184
                 +yg++++ +++D+ ++   ++    +++k+++ ++ +rl+H+  gc+L++ +v+l++++f+  q + +c ke+++++ ++
  KKY18136.1 442 CYGNVTIGDEKDHWTVEVVNDAGSSDRSKIRTLTTAFRLRHTALGCYLRAGNVNLPQWGFK--QIETTCVKENNPRDVYT 519
                 *******999***666666899999************************************..************99987 PP

>> PMT_2  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.2   5.4e+03      99     117 ..      61      79 ..      55      83 .. 0.76
   2 ?   15.7  12.9   2.9e-06     0.013      22     131 ..     147     264 ..     142     299 .. 0.75
   3 ?   -3.1   1.5       1.8   8.1e+03     125     144 ..     675     701 ..     648     718 .. 0.40

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.2
       PMT_2  99 kywllagvlfGlgflsKyt 117
                 +y+++  ++ +l+f+++++
  KKY18136.1  61 EYLIAPLIFTALSFFTRMW 79 
                 5777788888999999887 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 2.9e-06
       PMT_2  22 lairlvsalagvltilllyllarrlfgkraallaalllav.vplfvalsalftpdaplvllwalalylllrale......knk.lkywllagvlfGlgf 112
                 + +r++ a +g++++ l y +ar+l  +ra ++ + l+ +    ++++s+ + +d++l+++++ ++++++r++       + + + ++ l+gv++G  +
  KKY18136.1 147 TFMRVFNAFFGAVCTPLAYYTARELNFRRATVWLVTLMVLfENSYATISRFILLDSMLLCFTCTTVLCWARFHRlqyktwSVEwFAWLCLTGVSIGCVC 245
                 67899*******************977888888877777614556667779999******************995443221221345589999999999 PP

       PMT_2 113 lsKytaallliaallylli 131
                  +K   a+ +  + +y   
  KKY18136.1 246 SVKWVGAFCTALVGIYTAE 264
                 9999988887755556544 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.8
       PMT_2 125 allyllis.......arrilkekkpyl 144
                 al+++++s       + ++l++k+ + 
  KKY18136.1 675 ALYFAILSagfvvdwTTQKLNNKVRWG 701
                 222222221111122233444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.49
# Mc/sec: 4610.86
//
Query:       KKY18137.1  [L=293]
Description: putative ww domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-09   37.8   4.0    2.5e-09   37.1   4.0    1.4  1  WW              WW domain
    0.00049   20.2  22.1    0.00049   20.2  22.1    2.7  2  DUF2076         Uncharacterized protein conserved in bacteria


Domain annotation for each model (and alignments):
>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   4.0   2.8e-13   2.5e-09       1      31 []      16      46 ..      16      46 .. 0.98

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 2.8e-13
                X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW  1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31
                +P+GW++q+  +++ ++Y+N  T+++qW+kP
  KKY18137.1 16 VPEGWKAQFNQQYNEWFYVNIYTKKSQWDKP 46
                5*****************************9 PP

>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.9  14.5         2   1.8e+04     101     148 ..     102     155 ..       5     161 .. 0.74
   2 !   20.2  22.1   5.5e-08   0.00049      76     178 ..     150     249 ..     137     265 .. 0.64

  Alignments for each domain:
  == domain 1  score: -8.9 bits;  conditional E-value: 2
     DUF2076 101 e....rpqpspqarpaapagqalgqeeqyaaqpgyaq...qqaqpqygqpaaapq 148
                 +    r q++  ar+ +  ++ +g+++ y++q+g+aq    ++ p  g ++++pq
  KKY18137.1 102 AqlaaRLQAEEDARARGSHSPMPGAATDYYGQQGSAQlgyGSQSPY-GAQTPEPQ 155
                 2455545556666666666667777777777777777664333333.33333333 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 5.5e-08
     DUF2076  76 qqaqeaqaqpssggFLsglFGggkkerpqpspqarpaapagqalgqeeqyaaqpgyaqqqaqpqygqpaaapq.....pggGggFLggAlqtAAGVaGG 169
                 q+++ + +++ s gFLs+l+G+gk++ ++  +  ++ +p+   ++   q ++q+gy+++q++   gq+++a++     ++gG    + Al    G +GG
  KKY18137.1 150 QTPEPQGTERGSKGFLSKLLGKGKQS-SSYGGGYQQGYPQHGYPQ---QGYSQQGYGHPQGYGYGGQYQQAQKkkhgmGAGG----AAALGVGGGLVGG 240
                 445556667779**************.444444555555544222...2344445554333333333333333323212444....79999******** PP

     DUF2076 170 vllangles 178
                 +lla++l +
  KKY18137.1 241 MLLADALDD 249
                 ******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2061.31
//
Query:       KKY18138.1  [L=715]
Description: putative rna binding protein nrd1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-10   39.4   0.0    1.7e-09   38.4   0.0    1.6  1  CTD_bind  RNA polymerase II-binding domain.
    7.8e-06   25.6   0.0    1.4e-05   24.8   0.0    1.5  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> CTD_bind  RNA polymerase II-binding domain.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   1.9e-13   1.7e-09       1      63 []      61     138 ..      61     138 .. 0.83

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 1.9e-13
    CTD_bind   1 kLnllYLaNdvlqns...krkq............kdefapaFapvlpeafadaykkapekikkklkrllniWeernvf 63 
                 kL +lY++++v++++   +rk                 +++  + lp +++d++++ape++k k+++ll+iWe  n+f
  KKY18138.1  61 KLGVLYVVDSVTRQWvdqARKAgqtlgsgasdgtFAAGVNRVTELLPVLLNDIIANAPEDQKAKIEKLLDIWERGNTF 138
                 89***********887765555689998877444444488888888888************************99987 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.6e-09   1.4e-05       2      67 ..     470     528 ..     469     531 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.6e-09
                 EEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTE CS
       RRM_1   2 fVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggr 67 
                 fVg+++  ++++ L+ +Fs+fG ++++ +  +     k++afV++ +++dAe+A + +  +k g  
  KKY18138.1 470 FVGGVT--TSDSHLRSIFSNFGIVQTCIVNLE-----KRHAFVKMMTRRDAESARDGMEQYKAGEM 528
                 555554..7899************99999997.....*******************9988876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.49
# Mc/sec: 4418.80
//
Query:       KKY18139.1  [L=474]
Description: putative citrate synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.1e-100  337.2   0.0   1.4e-100  336.8   0.0    1.1  1  Citrate_synt  Citrate synthase, C-terminal domain
  ------ inclusion threshold ------
       0.08   12.6   0.0       0.15   11.8   0.0    1.4  1  Eclosion      Eclosion hormone


Domain annotation for each model (and alignments):
>> Citrate_synt  Citrate synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.8   0.0  1.6e-104  1.4e-100       1     361 []      80     459 ..      80     459 .. 0.92

  Alignments for each domain:
  == domain 1  score: 336.8 bits;  conditional E-value: 1.6e-104
                   GGTTEEEEEESSEEEETTTTEEEETTEEHHHHH.........HHHS-HHHHHHHHHHSS---HHHHHHHHHHHHCTTS--HHHHHHHHCSSTTS-HH CS
  Citrate_synt   1 glrgvaaleteisevdgekgelrYRGydieeLa.........eekssfeevaylLltgelPtkeelkefkeelaearklpekvlealealpkdahpm 88 
                   g rg++al +e s +d e+  +r+RG +i+e +         +e+   e  ++lLltge+P++++++++++e+a+++ +p  v e +++ p+++hpm
    KKY18139.1  80 GARGIKALVWEGSVLDSEE-GIRFRGKTIPE-CqellpkapgGEEPLPEGLFWLLLTGEVPSEQQVRDLSAEWAARSDIPAFVEELIDRCPNTLHPM 174
                   6799***********9444.4**********.77*******7546667779999*****************************99999********* PP

                   HHHHHHHHHHHHHSTT......CTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS.--.---TTSSHHHHHHHHHHSS---HHHHHHHHHHHHH CS
  Citrate_synt  89 avlraavsalsaddee......seakeeseeaalrdalkliAklptiaaaiyrarlgrepl.epddklsyaenflymlrgkkpdeeeaklldlalvl 178
                   a+++ av al++++        + +k+++++++++d+++liAklptiaa iyr+ +++ ++   +++++++ n+++ l g   ++++++l++l+l++
    KKY18139.1 175 AQFSLAVVALEHESAFakayakGINKKDYWQYTYEDSMDLIAKLPTIAAKIYRNIFKDGKVaPIQKDKDFSYNLANQL-GFADNKDFVELMRLYLTI 270
                   *********7766655666666888888*****************************9888445588***********.547789************ PP

                   HS--SS.SHHHHHHHHHHTTT--HHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHSSGG........GHHHHHHHHHHTTTS--TTBC-SSSSS--HH CS
  Citrate_synt 179 haDHel.naSTfaarvvaStladlysaiaagigalkGplhgganeavlkmleeigsaev.......eveeylekvlakekerlpGfGHrvykksDpR 267
                   h DHe+ n+S++++++v+S+l+ +y ++aag+++l+Gplhg an++vl++l+++ ++ v        + +yl+++l+++ +++pG+GH+v++k+DpR
    KKY18139.1 271 HTDHEGgNVSAHTTHLVGSALSSPYLSLAAGLNGLAGPLHGLANQEVLNWLTKM-KSTVgsdlsdkSITDYLWSTLNAG-QVVPGYGHAVLRKTDPR 365
                   ******************************************************.55578999999***********86.***************** PP

                   HHHHHHHHHHHHTCHTHHHHHHHHHHHHHHHHHHHHCHH.GCT-EB-THHHHHHHHHHTT--GGG.HHHHHHHHHHHHHHHHHHHHH.HT------E CS
  Citrate_synt 268 akilkelaeelaeekgkdpllklaeeleevapevlkeke.eknlypNvDfysgvlyralgipeel.ftvlfaisRvaGwlAhileql.adnkiiRPr 361
                   ++ ++e+a ++     +dp++kl+++++++ap vl+e+  +kn++pNvD++sgvl++++g++e   +tvlf++sR++G+l +++  +     i+RP+
    KKY18139.1 366 YVSQREFALKHLP---DDPMFKLVSQVYKIAPGVLTEHGkTKNPFPNVDAHSGVLLQYYGLTEANyYTVLFGVSRALGVLPQLIIDRaLGAPIERPK 459
                   ********88876...9*******************9999*********************99745******************988555779*996 PP

>> Eclosion  Eclosion hormone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.6e-05      0.15      34      51 ..      96     113 ..      87     118 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.6e-05
    Eclosion  34 aeaClkfkGkliPdCedi 51 
                 +e  ++f+Gk+iP+C+++
  KKY18139.1  96 SEEGIRFRGKTIPECQEL 113
                 56789**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 3160.24
//
Query:       KKY18140.1  [L=311]
Description: putative mitochondrial dna replication protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-28   97.2   2.8    3.3e-11   43.0   0.0    3.2  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   1.2e-09   2.1e-05       7      84 ..      19      90 ..      14     102 .. 0.77
   2 !   28.7   0.4   5.1e-11   9.1e-07       7      91 ..     110     196 ..     104     202 .. 0.75
   3 !   43.0   0.0   1.8e-15   3.3e-11       7      93 ..     214     299 ..     208     302 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.2e-09
                HHHHHHHHHHHH.HHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHH CS
   Mito_carr  7 kellaGglagav.atlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfv 84
                ++ll G+   ++  t++ +Pl+v+Kt + +++k +       + +++ ki+   G++g+y+Gl+p     a+++++ ++
  KKY18140.1 19 SNLLLGAGLNMFeVTTLGQPLEVIKTTMAANRKDT-------FPSAMAKIWGRGGVLGFYQGLIPWAWIEASTKGAVLL 90
                455555555555257899***********999996.......66899*****************987777776665554 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 5.1e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS..HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   7 kellaGglagavatlvttPldvvKtrlqtqkksskksksaa..ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkr 91 
                   +  G+++ga+++ +t+ + +    + + k++ ++s+ ++  ++++++ iy++eG+rg  +G+++  +r++ +++ +f+l     +
  KKY18140.1 110 GGITGGMVGGAAQAYATMGFCTCMKTVEITKHKLAASGVKPpgTFETFRDIYRKEGIRGINKGVNAVAIRQVTNWGSRFGLSRLAEQ 196
                 5566677777777777777765544455555554555555567************************************98766555 PP

  == domain 3  score: 43.0 bits;  conditional E-value: 1.8e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   7 kellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 +++la++l+g ++    +P++v+++ lq++ +  k  k+  + +++k i++e+G++glyrG+ p++  +  ++ ++++l +  k+ +
  KKY18140.1 214 EKVLASALGGGLS-AWNQPIEVIRVELQSKTEDPKRPKNLTVGKAFKYILQENGVKGLYRGVAPRIGLSCWQTICMVALGDIAKEAV 299
                 6778888888885.568****************99999988***********************************99999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.49
# Mc/sec: 1907.64
//
Query:       KKY18141.1  [L=846]
Description: hypothetical protein UCRPC4_g05139 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0046   16.9  12.5     0.0046   16.9  12.5    2.3  2  eIF3_subunit     Translation initiation factor eIF3 subunit
  ------ inclusion threshold ------
       0.48   10.8   4.4        1.3    9.5   4.4    1.6  1  RXLR             RXLR phytopathogen effector protein, Avirule


Domain annotation for each model (and alignments):
>> eIF3_subunit  Translation initiation factor eIF3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   3.3      0.55   4.9e+03      26      45 ..     571     591 ..     553     611 .. 0.60
   2 !   16.9  12.5   5.1e-07    0.0046      29     110 ..     715     799 ..     693     809 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.55
  eIF3_subunit  26 dEd.ededvkdswdaeeeeee 45 
                   dEd +de  +++ ++eeee e
    KKY18141.1 571 DEDgDDERSLSEGEEEEEEIE 591
                   566455555544444444432 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 5.1e-07
  eIF3_subunit  29 ededvkdswdaeeeeeeekekakkaaeakak...aakakkkkskkqkiaekeerrkaeeeeaeeeeeleeedeaarkerlrkaee 110
                   + +dv d+ d+++++ +   + + aa+ +a    ++k+kkkk+  +  +ekee  ++++ ++e+++++++e+e++++  +r++e+
    KKY18141.1 715 DSDDVFDDNDDDDDDTDISSAVAVAATGNAVlkkNNKKKKKKNDFNFSKEKEEDLRRRRLKKEKSKDDDDEEEEEERIIERRKEK 799
                   4467999999999999866666666666655643333333333334456666444455555666667777777777777777776 PP

>> RXLR  RXLR phytopathogen effector protein, Avirulence activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   4.4   0.00014       1.3      11      69 ..     734     791 ..     732     818 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00014
        RXLR  11 vatlllasgsasaastkkdqktvavvskssgeaesrdaadkRfLRshk.ae.eddeeseer 69 
                 +a++++a+g+a+ ++   ++k+++  ++ + + e++++ ++R L ++k ++ +d+ee+eer
  KKY18141.1 734 SAVAVAATGNAVLKK---NNKKKKKKNDFNFSKEKEEDLRRRRLKKEKsKDdDDEEEEEER 791
                 688889999999555...4444444555556789999999*****9995222333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1729  (0.0964359); expected 358.6 (0.02)
Passed bias filter:                      631  (0.0351944); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.54
# Mc/sec: 4741.40
//
Query:       KKY18142.1  [L=186]
Description: hypothetical protein UCRPC4_g05092 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.089   12.5   0.1        6.9    6.3   0.1    2.1  2  LXG       LXG domain of WXG superfamily


Domain annotation for each model (and alignments):
>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1   0.00038       6.9      48      72 ..      21      45 ..      19      63 .. 0.80
   2 ?    4.2   0.0    0.0017        31      87     109 ..      97     119 ..      84     124 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00038
         LXG 48 aeaiknfyadlhlplltslqdlieq 72
                a aik +y+d h  +++++++   +
  KKY18142.1 21 AMAIKKQYSDFHHDTIQYIHMSGRD 45
                569****************986555 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0017
         LXG  87 vepssngfidedfLeqelenglk 109
                  e+ss g++d++ L q++++g  
  KKY18142.1  97 EEMSSGGYVDQEQLVQDVADGRA 119
                 58999*************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1180.75
//
Query:       KKY18143.1  [L=495]
Description: putative transcriptional regulator vib-1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-37  130.2   0.0    1.7e-37  129.4   0.0    1.4  1  NDT80_PhoG  NDT80 / PhoG like DNA-binding  family


Domain annotation for each model (and alignments):
>> NDT80_PhoG  NDT80 / PhoG like DNA-binding  family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.4   0.0   9.7e-42   1.7e-37       1     186 []      25     188 ..      25     188 .. 0.95

  Alignments for each domain:
  == domain 1  score: 129.4 bits;  conditional E-value: 9.7e-42
  NDT80_PhoG   1 ewvcyrRNyfqvvasfeleglslekfvkhsftilenelesgeklpikyfalkikatknseddseielvqhtakrdkgpqfaPeivalvpkelpkhqlir 99 
                 e++cyrRN+fq++++++l     ++ +++ +t      ++g+++pi   +l+i+at+++e ++++++++   k   g   a  + ++v+ke+p+++l+ 
  KKY18143.1  25 ELTCYRRNLFQITGTITL-----PRTLRYIMT------DQGDRIPILAQELTISATESVE-GNPVKIISVPWKTPAGGGTATAE-EKVEKEPPSIPLDT 110
                 68****************.....999***999......*********************7.********888888888887777.667999******** PP

  NDT80_PhoG 100 easnvrnesklkkfdeikkvarfeRlqFksatannkrrkq.qrffkLvvkllaivekeeskgteikiaelespplIVRGrsPsnyesr 186
                 +a+++ +       d++  +++++RlqF+ atann+rrk+ q++f++++k++ai     s+g +++iae++s ++IVRGrsP+n++sr
  KKY18143.1 111 MAGQDLDA------DYAAFPVTWKRLQFRIATANNGRRKElQQHFVIRLKVVAI----LSTGAKVSIAESQSGAIIVRGRSPRNFQSR 188
                 *******9......99************************************95....889************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3205.27
//
Query:       KKY18144.1  [L=899]
Description: putative beta-n-acetylglucosaminidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-59  200.5   0.0    5.8e-59  200.0   0.0    1.1  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
      2e-05   24.8   0.0     0.0015   18.8   0.0    2.6  2  Acetyltransf_1   Acetyltransferase (GNAT) family
     0.0012   18.8   0.0     0.0027   17.7   0.0    1.5  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai


Domain annotation for each model (and alignments):
>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.0   0.0   9.8e-63   5.8e-59      43     319 .]      18     304 ..       4     304 .. 0.92

  Alignments for each domain:
  == domain 1  score: 200.0 bits;  conditional E-value: 9.8e-63
                    SSHHHHHHHHHHHHHH-SS....S--EEEE---BTTB---SSS-...--S-HHHHHHHT-HHHHHHHHHHHHHHHHHHT--EE---B-----STTS CS
  Glyco_hydro_3  43 edtkqleelieaarqaseksrlgiPlllavDqegGlvqrlgegt...lfPsalalaatssldlikelgriiakelralgididfaPvvdvnrdprn 135
                    +  +++ +l+  +++  ++   ++Pl++avDqe+G v+ l ++t    fPsa++laat s++l +e++r +++el a+gi++ ++Pv+dv  + rn
     KKY18144.1  18 KAAEDATRLVLELQTIAHNAGHPVPLAIAVDQENGGVNSLYDETyirQFPSAMGLAATGSKKLTREVARSTGEELGAVGINWILGPVLDVLTNARN 113
                    556677788888899999999*****************99988633369******************************************99999 PP

                    S.SGGGSS-SSHHHHHHHHHHHHHHHHHTT-EEEEEEETTGTT-SSETT.TSEEB----HHHHHHTTHHHHHHHHHTT-SEEEE---B-TT..T-- CS
  Glyco_hydro_3 136 g.igvrsFsedpelvaalaaamvkGlqgagvaatvKHFpghGdgavdsh.kelptvdhseeelrevdlvpfqaaieagvdsVMtaHvqfpa..ldg 227
                       gvr+F++dp+ ++a++ + +kG+q+ag+a+++KHFp +G+ +  +  +++pt++ s e+l    +vpf++ai++g+ds M++ v +++  +d 
     KKY18144.1 114 QpLGVRAFGDDPQQASAYGVECMKGYQEAGLATCGKHFPSYGNLEFLGAlTDMPTITESVEQLSVSAMVPFRNAIAQGMDSMMVGGVSMTSesMDV 209
                    88*****************************************998876379*********************************99876422666 PP

                    -BGGG-HHHHIIIIIIIS---SEEEES-TTSHHHHCCS-HHHHHHHHHHHT-SBEES-S---SG...HHHHHHHHHTTSS-HHHHHHHHHHHHHH CS
  Glyco_hydro_3 228 tpatgskklltdvLRkelGFdGvvvsDalamkeiadrggkeeavvlaLkAGvDilLvpeertse...ikalkkavkeGeltearidesvrrvlrl 319
                      a +s+++++d+LR +l F Gvvvs  l m ++++  g  +  v+a kAG+Di+L++ +  ++   i +lk  +++G +    +++s++rvlrl
     KKY18144.1 210 MHACLSEQVVQDLLRRDLRFSGVVVSECLEMDALSKNIGVGQGTVMATKAGCDIILICRSFPVQqeaIGGLKLGLENGMIEPGLLQQSLQRVLRL 304
                    6***********************************************************988788899************************96 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.5e-07    0.0015      32      99 ..     606     674 ..     573     681 .. 0.78
   2 ?    2.9   0.0     0.021   1.2e+02      22      73 ..     767     832 ..     748     867 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.5e-07
                     TC.EEEE.EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEE CS
  Acetyltransf_1  32 ae.gllv.aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivl 99 
                     +e +++v  +    l Gf++ +  p    +++++  + V+p++r+  +G  L + +++ ++++ g+k+  l
      KKY18144.1 606 EEaHFVVrNSSTKDLYGFCTTYYFPS--MNTGVVGVILVDPSRRKLSIGHSLHNRAIRSLLQRkGVKRFTL 674
                     44244443333355999997777777..79*********************************88899776 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.021
                     HHHHHHHHSTTCEEEE...EEETTEEEEEEEEEEEET...........TSTTEEEEEEEEESGGGT CS
  Acetyltransf_1  22 eefeesfsleaegllv...aeedgeliGfisllkipd...........ekggvayieslaVspeyr 73 
                     e++++ ++++a+++++     +dg+++G++ ++k              ++g    i s+++s + r
      KKY18144.1 767 EIYKIALEDQASCGIIrakRPDDGTILGTVIMYKAHSklarfipalagTAGSSSGISSVVISATGR 832
                     33555577788888888777788*******999998877777777777777777777777765544 PP

>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   4.5e-07    0.0027     116     177 ..     491     549 ..     480     572 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.5e-07
                      EEEEEESSGG--TTTGTTTEEEEEE-S--GCCHHHHHHHHHTTSS---B--SS-EESSSGGG CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C 116 vvvlqsggpvavepwkeenvkAilaawlpGqegGtaiadvLfGdvnPsGkLpvtfpksledl 177
                       +v+  ++p++ +   e ++   + ++   + + +a+++vL+G+ nP+G Lp t++++   +
       KKY18144.1 491 FIVIAVSSPYDFAT--ESSIGTYICSYDFTETALRALVKVLYGEINPTGVLPGTIQQNQR-M 549
                      57788889998854..46999999999999999**********************99754.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (899 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 5705.04
//
Query:       KKY18145.1  [L=285]
Description: putative glucosamine-6-phosphate deaminase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-13   51.1   0.0    2.4e-13   50.5   0.0    1.2  1  Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phospho


Domain annotation for each model (and alignments):
>> Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   1.3e-17   2.4e-13      70     211 ..       7     153 ..       2     175 .. 0.79

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 1.3e-17
                      S-TTSTT-HHHHHHHHTGGGS---GGGEE-S-TTSSTHHHHHHHHHHHHHHHHCCSSSSSESEEEE---TTS-BTTB-TTCHHHH......... CS
  Glucosamine_iso  70 VpaddpdsNaklareallskvkipeanvhpikesaaeapeaaaaayeeelkellakelpvfDlvlLGmGpDGHtaSLFPgspele......... 154
                      +p d+++s +  + ++++s+v+++++n+  ++ +a  +++ + ++ye+++k++       + l l G+GpDGH+a   Pgs             
       KKY18145.1   7 LPRDHSESYHSFMYKHFFSHVDVDPKNINILNGNAP-DLKVECEEYERKIKAA-----GGIELFLGGIGPDGHIAFNEPGSSLASrtrvktlae 94 
                      699****************************97666.68************74.....3599*************8888888754566666665 PP

                      CSSSSEEEESSBS..TSSS-EEEE-HHHHTTCSEEEEEEESHHHHHHHHHHHTT..TTT CS
  Glucosamine_iso 155 etdrlvvavedsp..kpppeRitlTlpvlnsarevlflvaGeeKaealeevlsgedpee 211
                      +t r+     d+   k p   +t+ ++++ +arev+++++G++Ka al++ ++g  +++
       KKY18145.1  95 DTIRANSRFFDNDtsKVPRMALTVGIQTVLDAREVVIIITGAHKALALQKCIEGGVNHM 153
                      3334444444444226666666667899**********************999655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.49
# Mc/sec: 1757.00
//
Query:       KKY18146.1  [L=505]
Description: putative betaine aldehyde dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.7e-146  488.4   0.0   2.1e-146  488.1   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  488.1   0.0  1.1e-150  2.1e-146       7     461 ..      21     489 ..      15     490 .. 0.96

  Alignments for each domain:
  == domain 1  score: 488.1 bits;  conditional E-value: 1.1e-150
                 SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHHHHH CS
      Aldedh   7 etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryyaela 104
                   +++++P+tg+++a++++at ed+daa+a+A++afk+w+ +p+  R++iL ka ++l++r++e+a++et++tGk ++e+++ +v   +dvl+y+a+l+
  KKY18146.1  21 PVFQTVDPSTGSPLADIHSATHEDIDAAIASAHDAFKSWSLTPPIVRSRILLKAVQILRDRNDEIARVETQDTGKAFSETSTvDVVTGADVLEYFASLV 119
                 4599*********************************************************************************************97 PP

                 HH..HSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHH CS
      Aldedh 105 ek..legevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealv 201
                     l+ge+++ +e++  ++++e+lGv++ I +WN+P+ +a+wk ap+laaGNt+v+KP+e tpl   +la ++ +ag+P+gv+n+v+gsg +vg++lv
  KKY18146.1 120 AGggLNGETTQLREDAWVYTKKEALGVCAGIGAWNYPIQIALWKSAPCLAAGNTMVYKPSEFTPLHGQILADVYTAAGVPPGVFNIVNGSG-DVGSYLV 217
                 7668*****99999***************************************************************************87.7****** PP

                 H-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS- CS
      Aldedh 202 ehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgd 300
                 +hp+++kvsftG +++g+k+a++aa+ +k vt+ElGGk+p+i+l+daDl++av++++++ f+++GQvC++++r++v++++  ef + l+ +++ ++ gd
  KKY18146.1 218 SHPSIAKVSFTGQVSTGQKVASSAAHGMKYVTMELGGKSPCIILPDADLESAVDGAMMANFFSTGQVCTNGTRVFVPSNLKAEFEKLLLSKMSHIRPGD 316
                 *************************************************************************************************** PP

                 TTSTT-SB---SSHHHHHHHHHHHHHHHHT.TSEEEE-TT..........E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEES..SHHHH CS
      Aldedh 301 pldedtdvGPliseaqlekvekyveeakee.gaklllGge..........reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfk..deeea 386
                  + ++t++GPl+s+ ++ekv++y++++++   a+ll Gg            +++ +++gy++ Ptv++n+t++m i +eEiFGPVl+++++   d++ +
  KKY18146.1 317 LFSPSTNFGPLVSRPHYEKVRSYISHGINTdKATLLSGGLdfpstfascfPSSTPPSSGYWLPPTVFTNCTDSMLITREEIFGPVLCILEYPatDIDSV 415
                 ***************************98626888889978887777777678899********************************9987669**** PP

                 HHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEE CS
      Aldedh 387 ieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevkt 461
                 i+ aN+t+ GLaagvf+kdl+++++v+++l+aG  +iN++ ++ ae+  +gG+k+Sg+G e+g++g+e++++ k+
  KKY18146.1 416 ISRANATPLGLAAGVFGKDLNTCHKVIDKLQAGITWINTWGESPAEM-SVGGWKMSGVGVENGRKGIEAWVRSKS 489
                 ****************************************8888888.**********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 3103.26
//
Query:       KKY18147.1  [L=555]
Description: putative choline oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-49  167.8   0.0    4.7e-49  167.4   0.0    1.2  1  GMC_oxred_N     GMC oxidoreductase
    5.4e-34  117.8   0.0    8.4e-34  117.2   0.0    1.3  1  GMC_oxred_C     GMC oxidoreductase
    4.8e-05   22.6   0.0       0.25   10.4   0.0    2.3  2  FAD_binding_2   FAD binding domain
    0.00016   21.9   0.1     0.0014   18.8   0.0    2.3  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00019   20.6   0.0    0.00029   20.0   0.0    1.2  1  Lycopene_cycl   Lycopene cyclase protein
     0.0036   16.9   0.0      0.026   14.1   0.0    2.1  2  DAO             FAD dependent oxidoreductase
      0.004   16.4   0.0     0.0091   15.3   0.0    1.6  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.038   13.2   0.0        1.5    8.0   0.0    2.8  3  Thi4            Thi4 family
      0.039   14.5   0.1        2.8    8.5   0.0    2.4  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
       0.13   11.1   0.0       0.21   10.4   0.0    1.2  1  Trp_halogenase  Tryptophan halogenase


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.4   0.0   2.6e-52   4.7e-49       1     296 []      14     307 ..      14     307 .. 0.90

  Alignments for each domain:
  == domain 1  score: 167.4 bits;  conditional E-value: 2.6e-52
  GMC_oxred_N   1 vdelveggGsagsvvAaRLse.dpstsvlvleaggreknrl.imvlalalklidkklntayetepekalngrrlilpaGktlGGgsvvNwsayiRtpa 96 
                  +d+l++ggG+ag+v+A+RL+e  p++++l++eag+++   +    l++ l+l+ ++l+ +y t+ ++  n+ +    ++k+lGG s+ N  +++R+ +
   KKY18147.1  14 YDYLIIGGGTAGCVIASRLAEyLPHKKILMIEAGPSDFLDDrVLNLKDWLSLLGGELDYDYGTTEQPMGNSYIRHS-RAKVLGGCSSHNTLISFRPFE 110
                  79******************956**************999988899999999999999999999999988888888.********************* PP

  GMC_oxred_N  97 adldeWeeeaglegwssdevlpafkkvetaqalesdlhgvdgrlgvtekgkeesplnkallkaae.elGlpvprdlngk......hqcGvcllgv..t 185
                   d + We+  g++gws d + ++++++              ++++     + ++ l+k++++ +   + +pv  d+n++       ++Gv+++ v  +
   KKY18147.1 111 YDCQLWESM-GAKGWSFDMFMRVLDRLR-------------NTIQP-VHSRHRNQLCKDWVNSCStAMDIPVIHDFNKQiketgsLKEGVGFFSVsyN 193
                  ********9.******************.............55543.366899999*99999997257999888888877555664566666666659 PP

  GMC_oxred_N 186 crtgarqstarawLrpal....erpnleiltgakaekiilegrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkevgv 279
                   ++g+r+s++ a+++p l    erpnl+ilt+a +++i +e +++ ++GV+++ k+gt   + +a+ e++++aGa+ +P l+++SGlG+a++L+++ +
   KKY18147.1 194 PDDGRRSSASVAYIHPILrgdeERPNLKILTNAWVSRINVE-NNDTVTGVNITLKDGT-PLTLTAKTETILCAGAVDTPRLMLLSGLGPASQLQSLSI 289
                  99*************99866668***************887.8999************.999************************************ PP

  GMC_oxred_N 280 dvvvdlp.vGknLqdHpv 296
                   v+ d p vG+nL dHp+
   KKY18147.1 290 PVICDIPgVGENLLDHPE 307
                  ****************95 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2   0.0   4.7e-37   8.4e-34       1     144 []     396     537 ..     396     537 .. 0.97

  Alignments for each domain:
  == domain 1  score: 117.2 bits;  conditional E-value: 4.7e-37
                  ----EEEEESTT-TCCEEEEE--TT-SHH..HHHHHHHHHHHHHHHCTSGGG.TTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT- CS
  GMC_oxred_C   1 PesrGrvtlsssdptgaplidpnylsdpr..dlaalvealkaarkilaaaal.dvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcr 95 
                  P+srG+++l+ssdp ++p++d++y++d +  d a+ v +lkaarki+++a++ ++ ++e+ pg+       av+sd++l ++ ++ ++t++Hp Gt++
   KKY18147.1 396 PRSRGKLYLTSSDPAVKPALDFRYFTDSEgyDAATFVFGLKAARKIAQQAPFkNWIKREVAPGP-------AVQSDADLSEYARKVAHTVYHPAGTTK 486
                  99***********************998888*******************99999999999999.......9************************** PP

                  B-STCGC..BSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C  96 MGadpkd..sVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                  MG+ + d  +VVD++lr++g++ +r++Da vfP +++ np+lt+l ++e+a
   KKY18147.1 487 MGDVKTDkmAVVDEKLRIRGLKAVRIADAGVFPAMTTINPMLTVLGVGERA 537
                  **8887799****************************************97 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0002      0.37       1      32 [.      15      48 ..      15      50 .. 0.85
   2 !   10.4   0.0   0.00014      0.25     142     221 ..     205     289 ..     174     299 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0002
                   SEEEE--SHHHHHHHHHHHH..TTT-EEEEESSS CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaae..aGlkvavvekeq 32
                   D ++iG+G AG++ A ++ae    +k++++e ++
     KKY18147.1 15 DYLIIGGGTAGCVIASRLAEylPHKKILMIEAGP 48
                   789****************985556888888776 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00014
                    HHHHHHHHHHHTCT.EEEEESEEEEEEEECTT.EEEEEEEEETTTTCEEEEEES.EEEE-----GG.............GSSSBSS CS
  FAD_binding_2 142 allarlvesarkag.vdfqerteadeLivedg.rvtGavvenpesgrevrirak.avvlatgGfgr...allkellgaaaeaettn 221
                    a +++ +++ ++++ +++++++ + +++ve++  vtG+ ++ +++g+  +++ak  ++l +g++      ll  l +a + ++ + 
     KKY18147.1 205 AYIHPILRGDEERPnLKILTNAWVSRINVENNdTVTGVNIT-LKDGTPLTLTAKtETILCAGAVDTprlMLLSGLGPASQLQSLSI 289
                    5677777777788889*************98879***9999.9********************99877655555555544444444 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     8e-07    0.0014       1      29 [.      18      48 ..      18      49 .. 0.94
   2 ?    0.1   0.0      0.54   9.8e+02      29      65 ..      92     129 ..      89     132 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 8e-07
                   EE--SHHHHHHHHHHHCC..TEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka..gfdvlllekrd 29
                   I+G+G +G+v+A++La++  ++++l +e+++
     KKY18147.1 18 IIGGGTAGCVIASRLAEYlpHKKILMIEAGP 48
                   9****************99899******986 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.54
                    SSSSGGG-EECETT.CEECTS---EEETTHHHHCHHHH CS
  NAD_binding_8  29 drlGGraasyevpg.vrvdygahifhgsgyypnvrrll 65 
                      lGG+++ +++   ++++y  + + ++g     ++++
     KKY18147.1  92 KVLGGCSSHNTLISfRPFEYDCQLWESMGAKGWSFDMF 129
                    56899999999955599999999999998888888877 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.6e-07   0.00029       1      36 [.      15      50 ..      15      64 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.6e-07
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   D ++iG+G Ag+ +A rl+e  p  k+++iea+ps 
     KKY18147.1 15 DYLIIGGGTAGCVIASRLAEYLPHKKILMIEAGPSD 50
                   779******************************985 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.5e-05     0.026       1      30 [.      15      48 ..      15      51 .. 0.88
   2 ?   -0.0   0.0      0.29   5.1e+02     161     203 ..     220     267 ..     194     300 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.5e-05
                EEEEECTSHHHHHHHHHHHHT.T...EEEEESSS CS
         DAO  1 dvviiGGGiiGlstAyeLarr.g...Vtllekgd 30
                d +iiGGG +G+ +A  La+  +   ++ +e+g+
  KKY18147.1 15 DYLIIGGGTAGCVIASRLAEYlPhkkILMIEAGP 48
                789***************99764569*****984 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.29
                 -EEEESECEEEEEEEE.TCEEEEE....EECTEEE.E.EEEE.EEE--GGG CS
         DAO 161 veilegtevtgleeed.gkvwgve....rttpgen.d.aada.vVnaaGaw 203
                  +il+++ v +++ e+ + v+gv     +   g+  + +a++  +++aGa 
  KKY18147.1 220 LKILTNAWVSRINVENnDTVTGVNitlkD---GTPlTlTAKTeTILCAGAV 267
                 57888888888855444778888764433...3332244566899**9975 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   5.1e-06    0.0091       1      31 [.      14      52 ..      14      71 .. 0.79
   2 ?   -3.6   0.0       2.9   5.2e+03     199     225 ..     221     251 ..     215     283 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.1e-06
                 CSEEEE--SHHHHHHHHHHHHH..TS-EEEEE......T CS
                 xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx......x RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaqa..gakvtlve......l 31
                 +d+++iGgG AG+  a +la++    k++++e      l
   KKY18147.1 14 YDYLIIGGGTAGCVIASRLAEYlpHKKILMIEagpsdfL 52
                 6899*****************555999****85444443 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.9
                  EEEESCEEEEEEETTE....EEEEEETTSCE CS
                  xxxxxxxxxxxxxxxx....xxxxxxxxxxx RF
  Pyr_redox_2 199 evklgtsvkeidgnge....klevvledgee 225
                  ++ +++ v +i+ +++     +  +l+dg+ 
   KKY18147.1 221 KILTNAWVSRINVENNdtvtGVNITLKDGTP 251
                  5666666666665555433333355555543 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00082       1.5      16      49 ..      12      46 ..       2      49 .. 0.90
   2 ?    1.2   0.0     0.098   1.8e+02     102     137 ..     209     244 ..     187     250 .. 0.78
   3 ?   -1.3   0.0       0.6   1.1e+03      29      54 ..     434     458 ..     430     465 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00082
                TEEEEEEE--SHHHHHHHHHHHHC.TTS-EEEEES CS
        Thi4 16 aesDvvivGaGssGLtaayylakk.pdlkvailer 49
                 + D +i+G+G++G   a  la+  p  k++++e+
  KKY18147.1 12 NNYDYLIIGGGTAGCVIASRLAEYlPHKKILMIEA 46
                56799****************************96 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.098
                 HHHHHHHTSTTEEEEESEEEEEEEEETBTEEEEEEE CS
        Thi4 102 tllskvlqlanvkllnavaveDlivregegvaGvvi 137
                  +l    +++n+k+l+   v  + v ++++v+Gv i
  KKY18147.1 209 PILRGDEERPNLKILTNAWVSRINVENNDTVTGVNI 244
                 555555678******************9*****976 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.6
                 HHHHHHHHHHCTTS-EEEEESSSS-- CS
        Thi4  29 GLtaayylakkpdlkvailersvspG 54 
                 GL aa+ +a++  +k   + r+v+pG
  KKY18147.1 434 GLKAARKIAQQAPFKNW-IKREVAPG 458
                 9**********889865.57888888 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0016       2.8       3      31 ..      17      47 ..      15      57 .. 0.79
   2 ?    3.4   0.0     0.065   1.2e+02      54      79 ..     219     245 ..     209     249 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0016
                EEECSSHHHHHHHHHHHHTT..SEEEEEESS CS
   Pyr_redox  3 vvvGgGyiglElAgalaelg..kkVtvvers 31
                +++GgG+ g+  A+ lae+   kk+ ++e++
  KKY18147.1 17 LIIGGGTAGCVIASRLAEYLphKKILMIEAG 47
                79**************996545666666665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.065
                 TEEEECSEEEEEEEEETTS.EEEEEEE CS
   Pyr_redox  54 gievllntkveeiegsedg.vesvklk 79 
                 + ++l+n+ v +i+ +++  v++v ++
  KKY18147.1 219 NLKILTNAWVSRINVENNDtVTGVNIT 245
                 889***********888888**99875 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00012      0.21       3      33 ..      17      46 ..      15      48 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
                    EEE--SHHHHHHHHHHHHHTTTSSEEEEEE- CS
  Trp_halogenase  3 vivGGGtaGwlaAaalakalkgklevtlves 33
                    +i+GGGtaG + A+ la++l +  +++++e+
      KKY18147.1 17 LIIGGGTAGCVIASRLAEYLPH-KKILMIEA 46
                    7*******************55.89999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3882.04
//
Query:       KKY18148.1  [L=297]
Description: putative short-chain dehydrogenase reductase family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      7e-56  189.4   0.0    8.5e-56  189.1   0.0    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    4.4e-46  156.8   0.0    5.5e-46  156.5   0.0    1.1  1  adh_short     short chain dehydrogenase
    1.8e-13   50.8   0.0    2.5e-13   50.3   0.0    1.1  1  KR            KR domain
     0.0061   16.0   0.0     0.0078   15.6   0.0    1.2  1  DUF1776       Fungal family of unknown function (DUF1776)
  ------ inclusion threshold ------
       0.11   12.1   0.0       0.17   11.5   0.0    1.3  1  DUF572        Family of unknown function (DUF572)


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.1   0.0   2.4e-59   8.5e-56       4     233 ..      64     293 ..      59     294 .. 0.94

  Alignments for each domain:
  == domain 1  score: 189.1 bits;  conditional E-value: 2.4e-59
                   TSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                   sgIGraiA ++a eGae ++++l +e+  ++++++ +ee+g ++  l++D +++e+++++ve++ +k+g+++ilvnna++ +   ++++++s+e++ 
    KKY18148.1  64 SGIGRAIAILFAMEGAESLIAYLPQEEkdAQETKKKVEEHGGKIhlLQTDLRSQENCKKVVETALSKMGGINILVNNAAYQNM-IENIEQLSEEQWL 159
                   8*********************999986677888888888888667************************************9.9************ PP

                   HHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHH CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleele 193
                   +++++n++ +f+lak+ +p+mk+g  i+n +s+ a ++ p+   y+ +K+a++a+tr l +++  kgiRvNav+pgp+ T++  +    de ++e+ 
    KKY18148.1 160 HTFNTNIHPYFYLAKYSIPHMKAGDTIINNASINAYVGRPDLLDYTSTKGAIVAFTRGLSNQYVGKGIRVNAVCPGPVWTPLIPSTMT-DEAMKEF- 254
                   **********************************************************************************877764.4444444. PP

                   HHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 194 araplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                     ap+gr g+p+e+a   +fLas+++s i+Gq l+ +gG+
    KKY18148.1 255 -TAPIGRPGQPSEIATNFVFLASEDSSLISGQSLHPNGGV 293
                   .59************************************7 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5   0.0   1.5e-49   5.5e-46       1     189 [.      55     244 ..      55     250 .. 0.94

  Alignments for each domain:
  == domain 1  score: 156.5 bits;  conditional E-value: 1.5e-49
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE..EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGC CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv..vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfsel 96 
                 k +++tG++sGIGraia  +a eGa+ ++  + ++e++++e++k+++e+g k++ +q+D++++e+++++ve+a +k+g++++LvnNA+  +  +++++l
  KKY18148.1  55 KKAIITGGDSGIGRAIAILFAMEGAESLIayLPQEEKDAQETKKKVEEHGGKIHLLQTDLRSQENCKKVVETALSKMGGINILVNNAAYqNMIENIEQL 153
                 689**********************98887677888899**************************************************77779999** PP

                 SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short  97 seeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 see+w  ++++N++ +f l++  +p+m+   + +I+n +S+++ v+ + +  Y+++K+a++++tr l++++  +girvnav+PG+v T++  +
  KKY18148.1 154 SEEQWLHTFNTNIHPYFYLAKYSIPHMK--AGDTIINNASINAYVGRPDLLDYTSTKGAIVAFTRGLSNQYVGKGIRVNAVCPGPVWTPLIPS 244
                 **************************99..6678******************************************************98655 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   6.9e-17   2.5e-13       4     162 ..      58     217 ..      56     232 .. 0.91

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 6.9e-17
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---.------TTT-- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAg.vlrdklleemt 101
                 +itGG  g+G+++a   a +ga++l+    +  +++d++++ +++e++g ++++++ D+ ++++ ++++e++ ++++ i+  ++ A    + + +e+++
  KKY18148.1  58 IITGGDSGIGRAIAILFAMEGAESLIAYLPQ--EEKDAQETKKKVEEHGGKIHLLQTDLRSQENCKKVVETALSKMGGINILVNNAAyQNMIENIEQLS 154
                 8**************************9999..78999999***************************************9887665056689****** PP

                 HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHH CS
          KR 102 aedleqvlapKvkGawnLhelled..esldffvlfSSiagllgsagqanYaaaNaflDalaey 162
                 +e++ + ++  ++    L +++ +  +  d ++  +Si + +g +   +Y+++   + a+ + 
  KKY18148.1 155 EEQWLHTFNTNIHPYFYLAKYSIPhmKAGDTIINNASINAYVGRPDLLDYTSTKGAIVAFTRG 217
                 ********************99887899***********************998888777765 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.2e-06    0.0078      96     193 ..     136     230 ..      80     235 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.2e-06
     DUF1776  96 ilvPslsy..ptgpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidv 192
                 ilv +  y   +  ie++++++w  ++n+++  ++ + +  +p++++       +i+ n+si + +  p     + + +a+ a+++ L++++  ++i v
  KKY18148.1 136 ILVNNAAYqnMIENIEQLSEEQWLHTFNTNIHPYFYLAKYSIPHMKA-----GDTIINNASINAYVGRPDLLDYTSTKGAIVAFTRGLSNQYVGKGIRV 229
                 677777785556789999****************************8.....67999999999999999999999999999999999999888788877 PP

     DUF1776 193 t 193
                  
  KKY18148.1 230 N 230
                 5 PP

>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.8e-05      0.17      82     177 ..      25     156 ..      22     166 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.8e-05
      DUF572  82 itfkTDPkntdYvveeGatRnfkaek...................................leeeeakreekekeeeeaedamkklEkrtkdskkemea 145
                   +kT P+ +    e G+ +++ka                                     l++ee + +e +k+ ee++ +++ l  +   +++ +++
  KKY18148.1  25 SDMKTKPESSNLPTEDGGFKKYKAAGklggkkaiitggdsgigraiailfamegaesliayLPQEEKDAQETKKKVEEHGGKIHLLQTDLRSQENCKKV 123
                 579*******************99999**********************************88888888999999999************999999888 PP

      DUF572 146 le.sLeeLqelnqrqakvdfdanlelrkefree 177
                  e +L+++   n    +  +++++e+ ++  ee
  KKY18148.1 124 VEtALSKMGGINILVNNAAYQNMIENIEQLSEE 156
                 763699998888888888888888888877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      623  (0.0347482); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2535.20
//
Query:       KKY18149.1  [L=303]
Description: putative geranylgeranyl pyrophosphate synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-65  219.6   0.0    4.3e-65  219.3   0.0    1.1  1  polyprenyl_synt  Polyprenyl synthetase
  ------ inclusion threshold ------
      0.084   13.3   0.2       0.19   12.1   0.2    1.6  1  NBD94            Nucleotide-Binding Domain 94 of RH
      0.097   12.7   0.3        1.3    9.0   0.1    2.2  2  DUF489           Protein of unknown function (DUF489)


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.3   0.0   7.2e-69   4.3e-65       3     256 .]      15     256 ..      13     256 .. 0.95

  Alignments for each domain:
  == domain 1  score: 219.3 bits;  conditional E-value: 7.2e-69
                      HHHHHHHHHHHSSS--HHHHHHHHHHHHHSCGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEETTEE-HHHCTCHHHHHHHHHHHHHHHHH CS
  polyprenyl_synt   3 lleealeylveagGKrlRpllvllaaealkeeeeelekaavlawivellhaasLvhDDimDdsetRRGqpcahrlvGnklAindgdfllarafe 96 
                      ++  +++y+++++GK +R+ l+ +++ +l+++    +++av+ +++ +lh++sL++DD+ D+se+RRG p+ah+++G++++in+++++++ a++
       KKY18149.1  15 IILGPYDYMFSHPGKDIRAQLINAFNAVLHVPA---DSLAVITKVTGMLHTSSLLIDDVEDSSELRRGMPVAHNIFGTAQTINSANYVYFVALQ 105
                      566799************************666...899******************************************************* PP

                      HHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCC.SHHHHHHHHHHHTHHHCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH CS
  polyprenyl_synt  97 llaklfekslellelfsevllqtveGqlldleeekdddlskfsleeyleivkyKTaylfalpvalaallagasdeelealkdiglelGlaFQiq 190
                       ++kl +++  ++ +f+++ll++++Gq++dl+++  d+l+++++++yle+v++KT++lf+l+++l++  + +s    +++  +++ +Gl+FQi 
       KKY18149.1 106 EVQKL-KNKDTAIGVFATELLNLHRGQGMDLYWR--DTLTCPTEDDYLEMVQNKTGGLFRLAIKLMQGESYVS----KDCVPLVNVIGLIFQIC 192
                      *****.44489**********************9..9****************************99888873....579************** PP

                      HHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHHCT-HHHHHHHHHHTTSSHHHHHHHHHHHHHH CS
  polyprenyl_synt 191 DDylDlfgdpevlgKpagtDiqegkctlpilkalelaspeqrkvlkeilgkkaekeedvkealell 256
                      DDyl+l++++++ +K +++D++egk+++p+++ ++ a p++  +l +il++k+++ee +++al+++
       KKY18149.1 193 DDYLNLSSTSYTHNKGLCEDLTEGKFSFPVIHSIR-AAPDNL-QLINILKQKTKNEEVKRYALSYM 256
                      ***********************************.888866.9************9999999875 PP

>> NBD94  Nucleotide-Binding Domain 94 of RH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   3.2e-05      0.19      29      86 ..     236     295 ..     224     300 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.2e-05
       NBD94  29 eeiekektsleevknielsYgrsLik..llvqkIdeekkkaenlieeiekyienideikk 86 
                  +i k+kt  eevk   lsY    +   +    I+e kkkae+li++++    ++d i+ 
  KKY18149.1 236 INILKQKTKNEEVKRYALSYMEGTGSfqYTRGVIQELKKKAEELIQALDDGTVDVDGIRT 295
                 468899**************8877651155677****************99999999876 PP

>> DUF489  Protein of unknown function (DUF489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.035   2.1e+02      34     112 ..      56     131 ..      33     176 .. 0.75
   2 ?    9.0   0.1   0.00022       1.3      62     122 ..     235     293 ..     223     302 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.035
                 HHHHH--S-SSHHHHTTSGGGGHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHTTHHHH CS
      DUF489  34 lkslletdpestedvygglanlklGletlleqlekekkkkdaeltryalsllalerkLsknkealaklgerieqierql 112
                 +  +l+t++  ++dv +++++l+ G+   ++++++ ++  +     y ++l +  +kL+++++a+   ++++ +++r +
  KKY18149.1  56 VTGMLHTSSLLIDDV-EDSSELRRGMPVAHNIFGTAQT-INSANYVYFVALQE-VQKLKNKDTAIGVFATELLNLHRGQ 131
                 555666666666666.4578899999999999999888.44455556555544.4688888888888888887777655 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00022
                 HHHHHHT--SCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHTTHHHHTTS-TTSHHH CS
      DUF489  62 lleqlekekkkkdaeltryalsllalerkLsknkealaklgerieqierqlehfdllhenv 122
                 l+++l++++k  + e+ ryals ++ + +++ ++ ++++l+++ e++ ++l+  ++  + +
  KKY18149.1 235 LINILKQKTK--NEEVKRYALSYMEGTGSFQYTRGVIQELKKKAEELIQALDDGTVDVDGI 293
                 6667777665..99*******************************9998887665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      603  (0.0336327); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2090.25
//
Query:       KKY18150.1  [L=447]
Description: hypothetical protein UCRPC4_g05100 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3117.40
//
Query:       KKY18151.1  [L=447]
Description: putative glycosyltransferase family 4 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-23   83.0   0.0    4.3e-23   81.7   0.0    1.6  2  Glycos_transf_1  Glycosyl transferases group 1
      9e-19   68.2   0.0    1.3e-17   64.5   0.1    2.5  3  Glyco_trans_1_4  Glycosyl transferases group 1
    4.1e-12   46.4   0.1    9.7e-12   45.2   0.2    1.6  2  Glyco_transf_4   Glycosyltransferase Family 4
    8.9e-07   29.2   0.0    1.8e-06   28.2   0.0    1.6  1  Glyco_trans_1_2  Glycosyl transferases group 1
    3.6e-06   27.5   0.3    1.3e-05   25.6   0.2    2.0  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.7   6.3e+03     114     126 ..     114     126 ..     113     127 .. 0.88
   2 !   81.7   0.0   1.2e-26   4.3e-23      14     155 ..     189     325 ..     181     336 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.7
                      HTT--EEEETTTT CS
  Glycos_transf_1 114 aaglpviasnagg 126
                      a+++p++ +++g 
       KKY18151.1 114 ACKTPILWTDHGS 126
                      8*********986 PP

  == domain 2  score: 81.7 bits;  conditional E-value: 1.2e-26
                      T-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESS.BSS- CS
  Glycos_transf_1  14 kkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsis.EgfG 106
                         +i ++gr+ +eKgv  +++ +++       +v   i+   +   +++++++ l  + nv+f+ge++++++  +l+na ++++p  + E+fG
       KKY18151.1 189 SSTYIAFLGRIAPEKGVPAAVRIAEKAGYP--LKVAAKICT--TASRYYEEQIKPLFREYNVNFIGEINEKQKAPFLSNALALIFPICWmEPFG 278
                      567899*******************87654..666677887..7778888999999999999************************999***** PP

                      HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHH CS
  Glycos_transf_1 107 ivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairkl 155
                      +v +EAma+g+pv+a  +g ++ev+ dg+tG++v+++  ++++e ++k+
       KKY18151.1 279 LVMIEAMACGCPVVAFRNGSVPEVISDGVTGFVVDTE--DEAVEVLKKV 325
                      ************************************9..6666666665 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.41   1.5e+03      17      77 ..      25      85 ..      20      96 .. 0.67
   2 ?   -0.9   0.0      0.58   2.1e+03      61      97 ..     125     172 ..     102     172 .. 0.57
   3 !   64.5   0.1   3.7e-21   1.3e-17       3     128 ..     192     325 ..     190     330 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.41
                     HHHHHHHHHHHH.HHEEEEEES---..HHHHHHHT.T-T.TEEEE---TH.HHHHHHH-SEEE CS
  Glyco_trans_1_4 17 vdllleavpllrkkdvrlvivGdgprpeeleelaa.gleerveftGfved.laellaaadvfv 77
                     +++++e++ +l +  v+l+ +G+++ +++l e     +  + ++    e+ + +++++ d+++
       KKY18151.1 25 IHWMAEELVRLGHT-VTLYACGGSETSADLIECYPaSF-RELKIPHTAENyKLPYYKQLDLAI 85
                     67888888777744.99999995544446654332344.356666666445777888877776 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.58
                      ---.TH.HHHHHHH-SEEEE--.......-.--.SHHHHHHHHTT-EE CS
  Glyco_trans_1_4  61 Gfv.ed.laellaaadvfvaPs.......e.gf.glkllEamaaglpv 97 
                      G v +d ++e+l+a + + +P+       + ++ +l +l a  +glpv
       KKY18151.1 125 GSVhNDgKPEILQALTAMDIPMtsisdsqRnSLpQLEWLAAVQHGLPV 172
                      445433455555555555555544444331222467777777777776 PP

  == domain 3  score: 64.5 bits;  conditional E-value: 3.7e-21
                      EEEEES---GG.GTHHHHHHHHHHHH.H.HEEEEEES---..HHHHHHHT...T-T.TEEEE---..THHHHHHHH-SEEEE--...---SHHH CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllrkk.dvrlvivGdgprpeeleelaa...gleerveftGfv..edlaellaaadvfvaPs...egfglkl 87 
                       i f+Gr+ +++kgv   ++ +++     +v   i+      + +ee+++   + e +v f G++  +++a++l++a  +++P+   e fgl++
       KKY18151.1 192 YIAFLGRI-APEKGVPAAVRIAEKAGYPlKVAAKICTTA-S-RYYEEQIKplfR-EYNVNFIGEIneKQKAPFLSNALALIFPIcwmEPFGLVM 281
                      689*****.556*****9999977774434555555533.2.355555554321.356*******8556************************* PP

                      HHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-.HHHHHHHH CS
  Glyco_trans_1_4  88 lEamaaglpvVatdvggiaevv..gengllvppgd.pealaeai 128
                      +Eama+g+pvVa++ g ++ev+  g++g++v+ +d + +  +++
       KKY18151.1 282 IEAMACGCPVVAFRNGSVPEVIsdGVTGFVVDTEDeAVEVLKKV 325
                      ***************999*************9887566666655 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.2   2.7e-15   9.7e-12       1     108 [.      18     128 ..      18     162 .. 0.76
   2 ?   -3.1   0.0       1.8   6.6e+03      84     107 ..     277     299 ..     272     334 .. 0.75

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 2.7e-15
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgddgpleeev.elvvrvprvplpllkrllrslaflrrlrrllkre.kpDvvHahspaalgaallalrr 93 
                     +GG er+++ +a++L r+Gh Vt+++ g+++ +++    +  +++   +p+ + +++ + ++++l  ++    + D++H+h+  +++  ++  r+
      KKY18151.1  18 YGGTERVIHWMAEELVRLGHTVTLYACGGSETSADLIeCYPASFRELKIPHTAENYKLP-YYKQLDLAINGPiHHDIIHIHHGTFHWHPAVMQRL 111
                     7************************9999999988875444555555555555555555.45555555544359*******98888876666666 PP

  Glyco_transf_4  94 ..rlgiplVltvHglye 108
                       + + p+ +t Hg+ +
      KKY18151.1 112 tkACKTPILWTDHGSVH 128
                     66************995 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.8
  Glyco_transf_4  84 lgaallalrrrlgiplVltvHgly 107
                     +g++++ +++  g+p+V+   g+ 
      KKY18151.1 277 FGLVMIEAMA-CGCPVVAFRNGSV 299
                     5667777776.8899988776665 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0     5e-10   1.8e-06       9      68 ..     275     335 ..     254     369 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 5e-10
  Glyco_trans_1_2   9 espnlrlfEaaacGafaltddaegleelftpgkevilfedleelaekirylla.npeerra 68 
                      e + l++ Ea+acG+++++ +  +++e +++g +++++++++e++e ++++ + ++++ r+
       KKY18151.1 275 EPFGLVMIEAMACGCPVVAFRNGSVPEVISDGVTGFVVDTEDEAVEVLKKVGTlDRKRVRE 335
                      668899*********************************99***99999987756665555 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.2   3.8e-09   1.3e-05       1     114 [.      19     134 ..      19     208 .. 0.80
   2 ?   -0.7   0.0      0.48   1.7e+03      85      99 ..     158     172 ..     136     232 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 3.8e-09
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapgape.leedgvrvhrlpvprrpspladlaalralrrllrqrrerpdvvhahspt....aglaar 89 
                      gG +r+++ +a++L+++Gh Vt+++ ++ + + + +e   +  + l++p++ +  + l ++ +l  ++     + d++h+h+ t     +   r
       KKY18151.1  19 GGTERVIHWMAEELVRLGHTVTLYACGGSETSADlIECYPASFRELKIPHTAE-NYKLPYYKQLDLAI-NGPIHHDIIHIHHGTfhwhPAVMQR 110
                      89**********************97777766652444577788999998875.45677889999999.7899******999655563555556 PP

  Glyco_trans_4_4  90 larrrrgiplvvtlhglllrrgsga 114
                      l + + ++p++ t hg  +++g++ 
       KKY18151.1 111 LTK-ACKTPILWTDHGSVHNDGKPE 134
                      666.89*********8777776543 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.48
  Glyco_trans_4_4  85 glaarlarrrrgipl 99 
                      +++ +la++++g+p+
       KKY18151.1 158 PQLEWLAAVQHGLPV 172
                      566777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3029.64
//
Query:       KKY18152.1  [L=847]
Description: putative glycogen debranching enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00068   18.7   0.1       0.02   13.9   0.0    2.2  2  GDE_C     Amylo-alpha-1,6-glucosidase


Domain annotation for each model (and alignments):
>> GDE_C  Amylo-alpha-1,6-glucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5   0.0    0.0031        56      23      41 ..     335     354 ..     319     363 .. 0.85
   2 !   13.9   0.0   1.1e-06      0.02     258     351 ..     648     751 ..     484     769 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.0031
       GDE_C  23 sliAGlpwFsd.WGRDtfIa 41 
                 +++AG   F    GRDt+I+
  KKY18152.1 335 KVLAGAWKFLTyFGRDTMIS 354
                 689999999988*******8 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.1e-06
       GDE_C 258 eekakkvlekaeeeLltplGlktLdpedpeYkgnYdgsedsrdaaYHqGtvWvwllgsyveallkfgeklg.kskea............leevkalLeg 343
                 +  a+ +l+     L+tp+Gl     ++p++ +  + +++ ++aaYH   vW w l++  + l k+ +++  +s ++             +e+++ L++
  KKY18152.1 648 NTTAQSILRPFPAGLMTPIGLL---ISNPAFSSDPQLHQNFTNAAYHGTVVWGWQLAMMAKGLEKALKSCHvPSPKSeqeipssssyctSREIQQTLKS 743
                 4456677777777788888864...6789999999999999******************9988887776541222224467888888877788888888 PP

       GDE_C 344 lekhleea 351
                 +++hl++ 
  KKY18152.1 744 AYNHLWDI 751
                 88888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (847 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.47
# Mc/sec: 5393.41
//
Query:       KKY18153.1  [L=452]
Description: putative hexokinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-59  200.3   0.0    4.1e-59  199.9   0.0    1.1  1  Hexokinase_2  Hexokinase
    2.9e-44  151.4   0.0    3.8e-44  151.0   0.0    1.2  1  Hexokinase_1  Hexokinase


Domain annotation for each model (and alignments):
>> Hexokinase_2  Hexokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.9   0.0   4.6e-63   4.1e-59       2     240 .]     185     442 ..     184     442 .. 0.92

  Alignments for each domain:
  == domain 1  score: 199.9 bits;  conditional E-value: 4.6e-63
                   EEEEESSSEEEEEEEEGGG-GGGTTTS........-TTSEEEEE--GGGTTTT-SS-..--HHHHHHHHHSSSTTS-HHHHCCSHHHHHHHHHHHHH CS
  Hexokinase_2   2 iGlIlGtGtNacyleklsnieklegkk........eksgemviNtEwgafgdegklpllrtkyDkeldeespnpgeqlfEkmiSGmYLGelvrlvll 90 
                   ++lIlGtG+N+++++++s+i   ++k          ++++++ NtE+++fg    + l++t++D++l++++  p++q++E+m+ G+YLGe+vrl++ 
    KKY18153.1 185 MSLILGTGMNCAVHMPVSQIG--AQKFgerqpswhAQAEKVITNTELSMFGG---SILPKTRFDDQLNRSHALPDFQPLEYMTTGRYLGEIVRLIIF 276
                   89*****************99..45555678****9**************96...5566************************************** PP

                   HHHC.TSSSC.....CCCSTTSS-THHHHHHHC--BTT-HHHHHHHHHCCS---..-HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH-....... CS
  Hexokinase_2  91 dlieekllfkgk.seklktpysldteflseieedesedleevrevleellgles.vteedleivrevceavsrRaarlvAagiaallkklgk..... 180
                   +++e  +lf g   ++l+ py+ldt+fl+ +e+d++++l+++++ le+ + +++ ++ edl ++r ++e+vs+Raa+ +A+ i+al+  +g+     
    KKY18153.1 277 EATETAGLFGGViPSSLSMPYTLDTQFLAILESDTTPNLSRASSYLEKTHTFTNlPSLEDLLFLRSIAECVSTRAAAYIATSIHALWS-IGRdldda 372
                   ***988***666555*********************************99999967******************************99.56668888 PP

                   .......SSEEEEEESHHHHHSTTHHHHHHHHHHHHHT--S.......-SEEEEE---TTTHHHHHHHHH CS
  Hexokinase_2 181 ....eekekvtvgvdGslyekypkfrerlqealrellgeepe......kkvklklaedGsgvGAAliaav 240
                       +  ek t+++dGs+++kyp+fre++ +++ +++  e         +++l+++ d+ ++GAA+++av
    KKY18153.1 373 kspvTGAEKLTIACDGSVVNKYPGFREMCSSYIASMIAAEGRtrsstlPEIHLEPSCDAPIFGAAVAVAV 442
                   88885567889*************************855555889999*******************997 PP

>> Hexokinase_1  Hexokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.0   0.0   4.2e-48   3.8e-44      28     199 .]       6     178 ..       1     178 [. 0.88

  Alignments for each domain:
  == domain 1  score: 151.0 bits;  conditional E-value: 4.2e-48
                   HHHHS.S.STS--EE----S---S--EEEEEEEEESSSEEEEEEEEEESSS....-EEEEEEE.EE--GGGGGSBHHHHHHHHHHHHHHHHHHH... CS
  Hexokinase_1  28 ekgLakekeslkmlptyvtrlPtGkekGtylAlDlGgtnlRvllveLlges....kveitqek.ykipeelktgtaeeLFdfiakciaefleeegee 119
                   +++L ++     mlp+y + lP+G+e+Gt+lAlD+Gg+++Rv+lv L+g++     ++i   + ++i+e++++ ++ e+Fd++a +i++++++e   
    KKY18153.1   6 RNKLLTN--PYCMLPSYNHTLPSGNETGTFLALDVGGSTFRVALVSLTGRQhgqdGIKIVRVTsTAIDEKVRSLHGIEFFDWMATKIKHVVADEAGV 100
                   5555522..356************************************665555678877777679**************************99887 PP

                   .ST..T-S-EEEEEEE-SSEE-SBTT--EE-S--TT---.TT-TTSBHHHHHHHHHHHTT-SEEEEEEE-HHHHHHHHHHH CS
  Hexokinase_1 120 kkeekeeeelplGftFSFPveqtsldegtlirwtKgfai.kdvegkdvvqllqealerkglpvkvvalvNDTvgtllslaY 199
                   ++ +     +plG+++SFP+eqts++ g++++++Kgf++ k++ g+d++  l++a+ r+g++v++ a+vND+ +tlls aY
    KKY18153.1 101 QERN---GVIPLGLSWSFPIEQTSIRGGKIQNMGKGFNCsKGTLGQDLGVTLEAACSRQGVKVQIDAIVNDSSATLLSKAY 178
                   6444...68******************************45577************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.51
# Mc/sec: 2675.49
//
Query:       KKY18154.1  [L=466]
Description: putative n-acetylglucosamine-6-phosphate deacetylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-13   51.2   0.5    9.6e-09   35.2   0.0    2.6  3  Amidohydro_3  Amidohydrolase family
    8.6e-11   41.7   0.0    2.9e-10   40.0   0.0    1.9  1  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   4.2e-06     0.038       1      17 [.      57      73 ..      57      73 .. 0.95
   2 ?   -1.7   0.0      0.17   1.5e+03     274     296 ..     241     261 ..     238     278 .. 0.78
   3 !   35.2   0.0   1.1e-12   9.6e-09     379     473 .]     352     464 ..     305     464 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.2e-06
  Amidohydro_3  1 eviDakGrlvlPGFvDs 17
                  ++iD++G++v+PGF+D+
    KKY18154.1 57 QTIDLQGKIVAPGFIDV 73
                  79**************6 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.17
  Amidohydro_3 274 ergldvaihaigdaavddvldaf 296
                    +++d a+hai+++a++  ++++
    KKY18154.1 241 SATYDQALHAITQGATM--ITHL 261
                   57899999****99999..4444 PP

  == domain 3  score: 35.2 bits;  conditional E-value: 1.1e-12
  Amidohydro_3 379 gpfdpwprigaavmrktrrgg....................evlrpdeelsleealalyTrgpAkalgled..rkGtLevGadADlvvldadpldvd 453
                   g +d ++++  ++++++ +                      + +r+  ++ + ea+a +Tr+pA++lg+e   +kG+Le G+dADlvvl++  ++v+
    KKY18154.1 352 GLPDGLYPYPNNDTLRKSGIYltlerngriagsavsliqcvNNFRRWTRVGVAEAVACVTRTPARMLGAEIeaTKGRLEGGMDADLVVLSDSGIEVE 448
                   5555555555555555554445555555666666666666645555668899****************9875578********************** PP

  Amidohydro_3 454 ppelaearvrltvvdGrvvy 473
                   +      rv+ +++ Gr v+
    KKY18154.1 449 EG----LRVEGVWKFGREVF 464
                   85....89********9986 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   3.2e-14   2.9e-10       1     343 [.      65     462 ..      65     463 .. 0.81

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 3.2e-14
                   EEEE-EEEEEEECETTECSSS.GHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH..............HHHHHHHHHHTSSSEEEEEEE CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrga.tledwlvppetaaealesgiktalksGtttvadmgattst..............giealleaaeelplglrilgg 82 
                   iv PG+ID+++ +  ++++++ +     ++pe+ +++l+++ + ++++G+t+ + +     +              + +   + ae+l  g +++g+
    KKY18154.1  65 IVAPGFIDVQLNGAAGFNFSVpQ-----ETPEEFEAGLKKVNQHLIENGVTSYLPTVVSSLRevyhkvlphlgpsgASRNPSNGAESL--GAHVEGP 154
                   699*************9988866.....9*****************************888799999999998665555555677776..******* PP

                   SSEGGSGCCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHH..............HHHHHHHHHHHH.TTEEEEEETSSCHHHHHHHH CS
  Amidohydro_1  83 kvsldrgsaetskasreklkagaaetikgkadgvvkvalapheapafsde..............elkealkeakkr.dlpvaiHaletkgevedaea 164
                   ++s++ +++ +s+++ +  ++   +++   +++ ++++   ++ +a+++               el +++++  +    ++ +++++t++++ +a++
    KKY18154.1 155 FLSPS-KNGIHSLDVLRVARSL-SDVEEMYGKENLYPKASSKSTTATGPTtlsparirkitaapELGAMSDLIPDLtSQNLIFSIGHTSATYDQALH 249
                   ****9.8888888887777776.79999999999988888888888888877777888888888777777788888788899999************ PP

                   HHTTTEEEETTTTSTCC..........................................HHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEE... CS
  Amidohydro_1 165 afgetiehgthlevaes..........................................lglldeiklilahgvhltpteaellkerlkeagva... 216
                   a+  +++  thl +a+                                             ++++   ++a+g+hl+pt++ l +     +g     
    KKY18154.1 250 AITQGATMITHLFNAMLpfghrdpgifgllgnksqpssphsslpsspsprashssstpsPEIFRPFFGLIADGIHLHPTTLSLAHSS-HPTGTIlvt 345
                   ********************************************************9997777777777888888888866663333.333333222 PP

                   .HHHHHHHH..SEHHHHHH..HHHHHH.TSCEEEEEECTTSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT..-TTTSSS CS
  Amidohydro_1 217 .hcpfsnsi..lrsgreal..rkalde.GvkvglgtDgaasgnslnlleelrlalklqrgllyedeegglslkealrmaTingAkalg..lddkvGs 305
                              l +g+ +   ++ l++ G+  +l   g  +g++++l++++ +              + + ++ea++++T  +A+ lg  ++ ++G+
    KKY18154.1 346 dA----MPLsgLPDGLYPYpnNDTLRKsGIYLTLERNGRIAGSAVSLIQCVNNFRRW----------TRVGVAEAVACVTRTPARMLGaeIEATKGR 428
                   21....111234444433311455555588888888899********9999999933..........33899***************9666789*** PP

                   S-TTSB--EEEECCCTCGGGTTTCTSEEEEEEEETTEE CS
  Amidohydro_1 306 ievGkdADlvvvdldilaafvglkkdgnvkkvivkGkl 343
                   +e G dADlvv+      +  ++++   v +v++ G+ 
    KKY18154.1 429 LEGGMDADLVVL----SDSGIEVEEGLRVEGVWKFGRE 462
                   ************....7777777777888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.49
# Mc/sec: 2843.90
//
Query:       KKY18155.1  [L=502]
Description: hypothetical protein UCRPC4_g05105 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-13   50.1  36.2    1.8e-13   50.1  36.2    2.0  2  MFS_1     Major Facilitator Superfamily
    9.5e-09   35.2   4.0    9.5e-09   35.2   4.0    3.1  4  UNC-93    Ion channel regulatory protein UNC-93
  ------ inclusion threshold ------
      0.091   12.7   0.0       0.14   12.1   0.0    1.2  1  RuvC_III  RuvC endonuclease subdomain 3


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1  36.2   3.1e-17   1.8e-13      38     351 ..      96     436 ..      61     437 .. 0.65
   2 ?    0.3  13.1     0.044   2.6e+02      39     175 ..     311     475 ..     308     498 .. 0.72

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 3.1e-17
       MFS_1  38 ltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa..sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslG 133
                 +++ ++++a   +++G++++r+G r +l +g ++++l  + +l++   +++ +l+++ ++ Gl+ag+l++a +a++  +  ++++graig++ + f++G
  KKY18155.1  96 TVALYATFAGVGFFAGSIANRIGLRLTLSFGGFGYFLYlCSILSYNhnQNVGFLIFAGAVLGLCAGLLWTAQGAVMMSYPYEKDKGRAIGWFWMIFNMG 194
                 44555567777899************************44444454656677*********************************************** PP

       MFS_1 134 ailg..pllggllasslg..Wravfyilaivsllafvlfllllpeepperkrkspkeee...kgtgpaplvpawkallkdpvlwillialllfffgfsg 225
                 a+lg   +lg  l   +g    ++++++ i+++++f+l  ++ +++p +  r+ +       + t +++++ +++ +++d +++     l+ +ff+ + 
  KKY18155.1 195 AVLGslIPLGENLHKTAGavSDGTYIAFIILMAFGFLL--AWTLVDPEKVVRSDGSHVIlmkNPTWKSEILALLETFKTDTYIL----LLFPMFFASNW 287
                 ****5556666777666788888899999999999998..55555555555555544445554444445555899999999554....44444333332 PP

       MFS_1 226 lltllplylqevlgls..glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt........................s 298
                 ++t+ +        ++  +  l+g+l+ l+++vg   a ++g  +d   + rr+   ++l++l++l +++++                          s
  KKY18155.1 288 FYTYQFN-GINAAYFNtrTRALNGVLYYLMQIVG---AWIFGIGLDLKVAGRRTKARVVLVVLFVLTMVIWGGGyafektytrasvsaddfktkdfndS 382
                 2222222.23333344553366666777777777...66666666553333333333333333333333333333555555888888888888875543 PP

       MFS_1 299 savllllvlvliGfglgfvfpsllalasdla.ppeeagtasglfntagslggal 351
                  ++  +++++++Gf+ +  ++++  l+  ++   ++ +  +g++  ++s+g+a+
  KKY18155.1 383 GYIGPMFLYMFYGFFDAAWQTTVYWLMGAMTnNSRKLANFTGFYKGIQSAGAAI 436
                 333333344446665555444433333333322288889999999999999887 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.044
       MFS_1  39 tlyalgaavaslplGrlsdr.f.Grrr.vlllglllfalglllll....f......ass...............lwlllvlrvlqGlgagalfpagaal 109
                 +ly+l ++v++ ++G   d  + Grr    ++ ++lf+l+++++     f      a s               +   ++l ++ G++ +a  ++++ l
  KKY18155.1 311 VLYYLMQIVGAWIFGIGLDLkVaGRRTkARVVLVVLFVLTMVIWGggyaFektytrA-SvsaddfktkdfndsgYIGPMFLYMFYGFFDAAWQTTVYWL 408
                 689999999999999999964469999999999999999944444673334444331.14455555555555444447888889999999999999999 PP

       MFS_1 110 iadwfpk.eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpee 175
                 + ++++  ++ +  +g++ +  s+Ga++   l ++ + +l   a+ ++l++++l+++  ++++ +++
  KKY18155.1 409 MGAMTNNsRKLANFTGFYKGIQSAGAAIVWRLDAMAIPYLDEYASSWALCAAGLIFAAPVVWYKVRD 475
                 999999977888888**********************999955555555555555555333444444 PP

>> UNC-93  Ion channel regulatory protein UNC-93
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   4.0   1.6e-12   9.5e-09      42     144 ..      95     201 ..      82     210 .. 0.89
   2 ?   -3.7   1.5       1.5   8.9e+03      85     107 ..     283     302 ..     270     316 .. 0.55
   3 ?    0.0   0.1       0.1   6.1e+02      36      54 ..     380     398 ..     365     414 .. 0.79
   4 ?   -2.9   0.1      0.82   4.9e+03      62      78 ..     449     465 ..     433     471 .. 0.66

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.6e-12
      UNC-93  42 slaiiyavftvanlvapsvvdlltakwalvigallyaifqlgFlllnky....ylyissallGvgaallwtgqGsyLsenstretiernssilwallks 136
                 +   +ya+f+   ++a s+ + ++ +++l +g++ y ++  + l  n+     +l ++ a+lG+ a llwt+qG  +++   ++  +r  + +w ++++
  KKY18155.1  95 ATVALYATFAGVGFFAGSIANRIGLRLTLSFGGFGYFLYLCSILSYNHNqnvgFLIFAGAVLGLCAGLLWTAQGAVMMSYPYEKDKGRAIGWFWMIFNM 193
                 55678***********************************99998765333339********************************************* PP

      UNC-93 137 slliGgif 144
                   ++G+++
  KKY18155.1 194 GAVLGSLI 201
                 99999865 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.5
      UNC-93  85 lllnkyylyissallGvgaallw 107
                 +  n +y   +  ++G+ aa ++
  KKY18155.1 283 FASNWFY---TYQFNGINAAYFN 302
                 2222222...3345555555554 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.1
      UNC-93  36 kkaGYyslaiiyavftvan 54 
                 + +GY +  ++y+++ ++ 
  KKY18155.1 380 NDSGYIGPMFLYMFYGFFD 398
                 679**********998875 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 0.82
      UNC-93  62 dlltakwalvigallya 78 
                 d  ++ wal++++l++a
  KKY18155.1 449 DEYASSWALCAAGLIFA 465
                 44456677777777776 PP

>> RuvC_III  RuvC endonuclease subdomain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.3e-05      0.14       4      58 ..     372     427 ..     369     432 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.3e-05
    RuvC_III   4 eefieRqledtqyiakkakelLsnvvreee.knVvvtsGsiTaelRkdwgledvlk 58 
                 ++f+ ++ +d+ yi   +  + + ++++   ++V+   G++T++ Rk +++   +k
  KKY18155.1 372 DDFKTKDFNDSGYIGPMFLYMFYGFFDAAWqTTVYWLMGAMTNNSRKLANFTGFYK 427
                 89************************66658****************999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3403.81
//
Query:       KKY18156.1  [L=513]
Description: putative mfs transporter of unknown specificity [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-45  155.7  45.6    5.3e-44  150.6  48.3    1.8  2  MFS_1     Major Facilitator Superfamily
     0.0059   15.5   0.2     0.0059   15.5   0.2    2.3  2  PTR2      POT family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.6  48.3   5.9e-48   5.3e-44       9     352 ..      77     448 ..      69     449 .. 0.81
   2 ?    0.3   0.0     0.028   2.5e+02     149     178 ..     472     501 ..     467     513 .] 0.62

  Alignments for each domain:
  == domain 1  score: 150.6 bits;  conditional E-value: 5.9e-48
       MFS_1   9 alarsi......lgpalplalaedlg.ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslwlllvlrvlqGlg 98 
                 ++++++      ++++l  +++++++ ++p e+++l+++y+l+ + ++l++Grl+d fG +r+l++g+ +fa++++++ +a  s++ l++++rvlqG+g
  KKY18156.1  77 SAQFTTqaalgqTLAILH-IIGDSFHlSNPGELSWLIAGYSLTVGSFILVAGRLGDMFGYKRMLIIGYCWFAIWSIVAGLAvySNHVLFVFARVLQGIG 174
                 333333333332566666.8999999778999******************************************5555556679999************ PP

       MFS_1  99 agalfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........ 188
                  ++ +++g+al+ + +++ +++++++++++a++  G+i+g+++++l++  ++W+++f+ ++i+++  + + +++++ +pp++++++ k++         
  KKY18156.1 175 PSLTMTNGLALLGATYAPgRRKNMVFSFFGATAPGGSIVGAVFASLFS-MAWWPWAFWSFGIAMAGIAAV-AVVVVPDPPRKANVAMKTLHekiidldi 271
                 *************999999****************************9.889*************99774.4555566666666666665477776666 PP

       MFS_1 189 ..kgtgpaplvpawkallkdpvl..w.......illialllfffgfsg.....lltllplylqevlglsglllaglllallalvgailallagrlsdrl 271
                   + +g ++lv  +   +++ +l  w       +l++++ll+ ++f++        l+p+     ++ s ++l+ ++ + ++++ a +++++g+l+ +l
  KKY18156.1 272 pgAVVGITALVV-FNFAWNQAPLvgWqqpyvyvLLIVGILLVPLFFFIelrivPDPLIPFH-ALSRDVS-FVLGCIACGWGCFG-ALASVCTGWLLGHL 366
                 663333333333.666666666666566566667888888888888888898888888886.9999999.56666444444444.45589********* PP

       MFS_1 272 grrrrlllallllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggalg 352
                  + + +++al++++++a+++a +++ +s+++  +v+++i   g+ + fp++++++s+++ ++++g a++l+nt+ + +++l+
  KKY18156.1 367 RPSWVMTIALSCFTIGAILCATAPPGQSYWAQTFVCLVIMPwGMDMSFPAATVILSNSVERHHQGIAASLINTVVNYSISLA 448
                 **********************************77775555**********************************999987 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.028
       MFS_1 149 gWravfyilaivsllafvlfllllpeeppe 178
                 g+r++fy++ +++ l++ l l ++++  ++
  KKY18156.1 472 GYRGAFYMAIGLAGLGVCLSLSYVFVQFRD 501
                 789999998888888855544555444333 PP

>> PTR2  POT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   6.2      0.85   7.6e+03      71     116 ..     194     241 ..     139     248 .. 0.75
   2 !   15.5   0.2   6.6e-07    0.0059     102     156 ..     359     418 ..     340     488 .. 0.80

  Alignments for each domain:
  == domain 1  score: -4.6 bits;  conditional E-value: 0.85
                 CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHH...HHHHHHHHH CS
        PTR2  71 rersrfFsiFyfsiNvGSLlsliitpylqenvgyplg...Fgipavlmi 116
                 r+++ +Fs+F +    GS++  ++   l +++ +p++   Fgi++++++
  KKY18156.1 194 RRKNMVFSFFGATAPGGSIVGAVFAS-LFSMAWWPWAfwsFGIAMAGIA 241
                 66777999999999999998766554.5566677776222578877775 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 6.6e-07
                 T-HHHHHHHHHHHHHHHHHHHHCTTTS-EE------SHHHHCCCHSHHHHHCCC.....H CS
        PTR2 102 vgyplgFgipavlmiiallvFllGsrlykkkppkgnvltkvfkvllvaaknkvk.....k 156
                  g+ lg + p  +m ial  F +G  l  + pp+++  +++f +l+++ + + +     +
  KKY18156.1 359 TGWLLGHLRPSWVMTIALSCFTIGAILCATAPPGQSYWAQTFVCLVIMPWGMDMsfpaaT 418
                 79*******************************************998885544444431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.51
# Mc/sec: 3023.58
//
Query:       KKY18157.1  [L=508]
Description: putative lipase b precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.55
# Mc/sec: 2756.63
//
Query:       KKY18158.1  [L=297]
Description: putative phenazine biosynthesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-39  135.6   0.1    4.6e-39  134.6   0.1    1.5  1  PhzC-PhzF  Phenazine biosynthesis-like protein


Domain annotation for each model (and alignments):
>> PhzC-PhzF  Phenazine biosynthesis-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   0.1   2.5e-43   4.6e-39       1     283 []       8     293 ..       8     293 .. 0.84

  Alignments for each domain:
  == domain 1  score: 134.6 bits;  conditional E-value: 2.5e-43
                 EEET-SSTTSSEEEEEEESTT..CS-HHHHHHHHHHHTSSEEEEEE--SSTT...SSEEEEEE-SSSEES--HHHHHHHHHHHHHHCT-S-SCEEEEEE CS
   PhzC-PhzF   1 vdaFtespfkGNpaaVvldad..elddeelqsiAaelnlseTaFllkpsdek...arfrlRyFTPvaEvdlcGHatlasahalaekglvasaetvelet 94 
                 +d+Ft++ f+GNp+a+v      ++++ + q +A+e+nlseT+Fl +++d++   + fr+ +FT+ aEv+++GH+  ++a  l++ ++  ++++  l t
  KKY18158.1   8 LDVFTSKRFEGNPVAIVKVPTgtNISQLQKQHVAKEFNLSETVFLHEQTDKDlgeGAFRVDIFTAIAEVPFAGHPVTGTANYLLHYLK--DSKSKALIT 104
                 59**************987665799999999****************9966433389****************************997..799999*** PP

                 TTEEEEE..EEEEET.CEECCEEEEE-SEEEEEE-HHHHHHHHHHCCTSGG-TTS-BEEEESSSEEEEEEBSTCCHHHH----HHHHHHHCT-EEEEEE CS
   PhzC-PhzF  95 kaGilpvk.slkekd.dgeellielkfPvikteevssedlallakllklaaqkalpiavkstglekvivplsseeavaelspdlaeeikkcpkkgvivt 191
                 kaG++p + ++++ + + ++ +   ++P ++++   +  ++++++++   aq  +  ++ +  +++++ p +   + ++l+p  ++ i+   +++ +  
  KKY18158.1 105 KAGRIPFHvTDNGVQlQVAHNVHIHSQPFASQPFGHYPVVSIVKGMTFILAQLPTLEDLSHQ-TQNLLGPENTYTSHEALDPTWQAGIVTTFYYVDLGL 202
                 ******97422333313444555567999999999999999999877665444555555554.78999999999**********777777777766665 PP

                 E.ETTTSSCCEEEEEEEEGGGTEEEESS-HHHHHHHHHHHHHCC-S.SSEEEEEEEE-GGGT--EEEEEEEE..E-TTCEEEEEEEE-EEEEEEE CS
   PhzC-PhzF 192 a.aaeagskkdfhsRmFaPklGivEDpvtGsAsgaLaaylseklnl.eesakikieqgqalgrsgtleveve.vkvdkekervkvtGkAvtvmeg 283
                     +   ++ ++ RmF    G  EDp+tGsAs aL  yl    +   ++a+ +++qg +++r++++ +ev+ + +++  ++v ++G+Av vmeg
  KKY18158.1 203 SsEHSPTPTRLIRTRMF----GSREDPATGSASSALCCYLTLTQKPkANRATYHLTQGVEMNRESHIFIEVTlTDDGNGIKEVLLSGTAVKVMEG 293
                 50556778888999998....99*****************9877654899**********************999999***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2065.69
//
Query:       KKY18159.1  [L=376]
Description: putative zinc-regulated transporter 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-57  194.8   0.5    2.5e-57  194.6   0.5    1.0  1  Zip       ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.6   0.5   1.4e-61   2.5e-57       2     332 ..      42     372 ..      41     373 .. 0.94

  Alignments for each domain:
  == domain 1  score: 194.6 bits;  conditional E-value: 1.4e-61
         Zip   2 llkilaiiaililsllgllgpllvpkiskl.lsklllslllafavGvllgtaflhLlPealealeesqleeehth....plagllvllGflllllvekl 95 
                 +++i ai++ilils +++++p+  ++  kl  + +++ ++ +f++Gv++ taf+hLl +a+++++   + +  +h     ++  +vl + ++++l+++ 
  KKY18159.1  42 GARISAIFVILILSTVATFFPVAARRLPKLrIPTYVYLFARYFGAGVIVTTAFIHLLDPAYGEIGPDTCVGMTGHwadyAWCPAIVLTSVIVIFLLDFG 140
                 789***************************9***********************************9999985556*********************** PP

         Zip  96 ltmivekksshkektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseeedkeklaslkvraiilllgli 194
                 ++ +ve   + +  t +  ++  ++++ ++   +++++++e   +  +  ++  d   +++ +++e s +e++++       +++++ ++ +il++g+i
  KKY18159.1 141 AERYVEI--KYGAVTGPLVEDTVTTNGGSSIGVDSETKQKESRLQALTASAMYSDMYDTKQFDVEEVSFDEAAAER------SYKQQIAAFFILEFGVI 231
                 *******..9999999999999999999999999999999999999999999999988888888888888887765......99*************** PP

         Zip 195 lHsfidGLAlGvssssstgislfiAvllHelpeelglgaiLlkaglsrkkav..llnllfaltaplGiliGilvrs..isessgaeivsgillalsaGt 289
                 +Hs+++GL lG  +  +++ +l+ ++++H+ +e+lg+ga++    +++++ +  ll+ +++lt+p++i+iG+++r+  +++s +a++vsg+l+++saG+
  KKY18159.1 232 VHSVVIGLNLG--VVGDEFSTLYPVLVFHQSFEGLGIGARMSAIPFKKRSSLpwLLCAAYGLTTPIAIAIGLGLRTtyNPNSFTANVVSGVLDSMSAGI 328
                 ***********..99***********************************9999********************************************* PP

         Zip 290 flYvalvellphEllnek.gssslkqsllqllglllGfalmlll 332
                 ++Y++lvell++++  +  ++++ k     ++++llG++lm+ll
  KKY18159.1 329 LIYTGLVELLARDFIFNPvRTNNNKRLTFMIVCVLLGAGLMALL 372
                 ******************8777888888899***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2584.18
//
Query:       KKY18160.1  [L=455]
Description: putative glycoside hydrolase family 5 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-47  162.7   0.7    1.6e-47  162.3   0.7    1.2  1  Cellulase  Cellulase (glycosyl hydrolase family 5)
    2.4e-11   43.4  14.0    2.4e-11   43.4  14.0    3.2  5  CBM_1      Fungal cellulose binding domain
     0.0067   16.6   1.4      0.012   15.8   1.4    1.4  1  Toxin_7    Toxin 7


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.3   0.7   2.6e-51   1.6e-47       1     279 [.     159     423 ..     159     425 .. 0.90

  Alignments for each domain:
  == domain 1  score: 162.3 bits;  conditional E-value: 2.6e-51
                 ETTTSEEEEGEEECETTSCGG..SHHHHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESSTTTCSSSSTTTT CS
   Cellulase   1 vdasgkpvnlkglstswgnpy..ttkalidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildiHseegwltkadgnss 97 
                 vd+sg++++ ++++  +g+++  + ++ i+++  +gfn++Rlp+ ++++   +++  +d+++l+++++vv+y++eng  ++ld+H++      +++n+ 
  KKY18160.1 159 VDESGAEFG-TAIPGTYGTDFifPSTSSIETLIGQGFNIFRLPFLMERMAYGSITADFDSDYLANYTTVVNYITENGGWAVLDPHNY------GRYNGA 250
                 678888884.67777799999999999999********************999999******************************5......677*** PP

                 HHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTTS.SEEEEECHH......HHTBHHHHHCT..SG CS
   Cellulase  98 edtaeeffkklwtqiAerykkndevvifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgpn.rliivegns......wsgnldgavln..dP 187
                 + t+++ f  +wt++A+ + k+++ vif++ NE+h+++++          v +++++ai+ IR++g++ ++i+vegns      w++ +d+  ++  dP
  KKY18160.1 251 IITSTDDFGIFWTNMATAF-KSNSKVIFDTNNEYHDMDES---------LVLDLNQAAITSIRNAGATtQYIFVEGNSytgawtWNTTNDS-LQDltDP 338
                 *******************.****************8875.........489**************************5555444444443.2223366 PP

                 SSSSTTEEEEEEEETTTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTSSHHHHHHHHHHHHHHHHTTTEEEEEEESS CS
   Cellulase 188 ndsqdnliysvHfYgpsdfaqtefgkdltdktnlaqrledaakylvekgipviigEfGgsnadgdlakeeaekwldylkekgiswiyWslnp 279
                    qd l+y++H+Y + d ++t++  +++++t+ + r+  a+++l+e+g+  ++gEf+g+ +d   + ++ +  l+ l+++  +w++  ++ 
  KKY18160.1 339 ---QDLLVYEMHQYLDADGSGTSS--TCVSSTIGEARVVGATEWLKENGKLGVLGEFAGGANDV--CMQAVKGLLEHLNANADVWTGALWWG 423
                 ...89**************99999..*********************************98888..*********************99986 PP

>> CBM_1  Fungal cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4  14.0   3.9e-15   2.4e-11       1      29 []      22      50 ..      22      50 .. 0.98
   2 ?   -2.9   0.1       1.2   7.2e+03      15      20 ..      52      57 ..      51      58 .. 0.78
   3 ?   -3.4   0.2       1.7   9.9e+03      20      24 ..      67      71 ..      64      73 .. 0.71
   4 ?   -2.5   1.1      0.91   5.5e+03       7      15 ..     316     324 ..     316     324 .. 0.86
   5 ?   -3.3   0.4       1.6   9.5e+03      14      18 ..     359     363 ..     357     365 .. 0.56

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 3.9e-15
       CBM_1  1 lwgQCGGigWtGpTtCvsgatCtyqNeyY 29
                ++gQCGG++WtG+TtCvsg+ C++ N +Y
  KKY18160.1 22 AYGQCGGKNWTGATTCVSGYYCSSINSWY 50
                5**************************** PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.2
       CBM_1 15 tCvsga 20
                +Cv+g+
  KKY18160.1 52 QCVPGT 57
                799996 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.7
       CBM_1 20 atCty 24
                +tCt+
  KKY18160.1 67 STCTK 71
                68887 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 0.91
       CBM_1   7 GigWtGpTt 15 
                 G+++tG++t
  KKY18160.1 316 GNSYTGAWT 324
                 899***976 PP

  == domain 5  score: -3.3 bits;  conditional E-value: 1.6
       CBM_1  14 TtCvs 18 
                  tCvs
  KKY18160.1 359 STCVS 363
                 45665 PP

>> Toxin_7  Toxin 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.4   2.1e-06     0.012      16      34 .]      36      54 ..      29      54 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.1e-06
     Toxin_7 16 rCCsGlkCkelsipdsiCl 34
                 C sG++C+  + + s C+
  KKY18160.1 36 TCVSGYYCSSINSWYSQCV 54
                5*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1315  (0.0733449); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.49
# Mc/sec: 2774.04
//
Query:       KKY18161.1  [L=413]
Description: putative dipeptidase 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.2e-103  344.5   0.2   7.3e-103  344.1   0.2    1.1  1  Peptidase_M19  Membrane dipeptidase (Peptidase family M19)
  ------ inclusion threshold ------
      0.056   13.9   0.9       0.16   12.5   0.1    2.1  2  GDPD_2         Glycerophosphoryl diester phosphodiesterase fa
       0.17   11.2   0.0       0.21   11.0   0.0    1.2  1  OprB           Carbohydrate-selective porin, OprB family


Domain annotation for each model (and alignments):
>> Peptidase_M19  Membrane dipeptidase (Peptidase family M19)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.1   0.2  1.2e-106  7.3e-103       2     317 ..      82     411 ..      81     412 .. 0.97

  Alignments for each domain:
  == domain 1  score: 344.1 bits;  conditional E-value: 1.2e-106
                    HHCCS.EEEEEE-HHHHHHHCTTTTT......-TTTHCTSSS-HHHHHHHTEEEEEEEEE--C.....CCCCCCHHHHHHHHHHHHHHHHHHGTTT CS
  Peptidase_M19   2 llkkliviDghndlplklrqekkesl......llekdselqtdlerlraggvsavlfaifvpe.....dasyeeavkatleqidlirrlvrknpeq 86 
                    +lk++++iDghndlp+ lr e k++       +++++  ++tdl+r++ag+v+++++++fv++       + +++v++tleqid+++r+++++ + 
     KKY18161.1  82 ILKTTPLIDGHNDLPYLLRLELKNKIydtnkfTFREHLASHTDLKRMKAGRVGGQFWSVFVECpdivhLDDPNHNVRDTLEQIDVAKRFISEHDD- 176
                    57899**************999998899**999*******************************9999558899*******************98. PP

                    EEE-SSHHHHHHHHHTT-EEEEEEEESCGGGTT-HHHHHHHHHTTEEEEES-SSS-BSSB-BCCGTT...SSSSB-HHHHHHHHHHHHHT-EEE-T CS
  Peptidase_M19  87 lklvrtaddierakkegkiavllgiegaealgddlallrafyalGvrvlgltynrnnkfAdgaleek..dedgGLsefGkelVrelNrlgiliDlS 180
                    ++ ++t+  + +a+++gk+ ++lg eg+++ g+++a++r++ +lGvr++++t+n++n++A++a   +   +dgGL++fG +++re+Nrlg+++Dl+
     KKY18161.1 177 FHYCETSTCAVKAFRAGKVPSMLGAEGMHQTGSSIAVIRQLWDLGVRYITITHNCDNPYATAASTVTetGKDGGLTDFGAAAIREMNRLGMMVDLA 272
                    **************************************************************99988899************************** PP

                    TB-HHHHHHHHHH-SSE.EECCEEBTTTS--TTSB-HHHHHHHHHTT-EEEE-SSHHHCTTT..S--BHHHHHHHHHHHHHHT-GGGEEE---TTT CS
  Peptidase_M19 181 hlsektfldvlelSkaPvvaSHSnaralcdhpRNltDeqlkaiaesgGvvgvtfvpaflkek..aeatledvvdhidyivelaGidhVGlGsDfdg 274
                    h+s+++++d+l++++ Pv++SHS+++al ++ RN +D++l  ++ +gGv++v+fv+ fl+ +  + a+le++vdhi ++ve+aG+dhVG+G Dfdg
     KKY18161.1 273 HVSHRSMRDILDIARSPVIFSHSSCYALAQNYRNSPDDVLAMLKSNGGVIMVMFVKRFLNAEnpDAANLETAVDHIMHVVEVAGWDHVGIGADFDG 368
                    ***********************************************************9888899****************************** PP

                    TSS-BBTBSSGGGHHHHHHHHHHTTS-HHHHHHHHTHHHHHHH CS
  Peptidase_M19 275 ggelpegledvsklpnltaeLlrrgyseadiekilggNflrvl 317
                    + +l++g+++v+++p+l+++ +rrg ++++i+k++g+N+lr +
     KKY18161.1 369 TMTLANGINSVADYPKLIEAVMRRGATDEQIRKLAGENILRCV 411
                    *****************************************75 PP

>> GDPD_2  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.7e-05      0.16      11      25 ..     212     226 ..     210     226 .. 0.94
   2 ?   -2.4   0.1       1.3   7.7e+03      11      20 ..     257     266 ..     256     267 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.7e-05
      GDPD_2  11 avwrelvgaGVdgIn 25 
                 av+r+l+++GV++I+
  KKY18161.1 212 AVIRQLWDLGVRYIT 226
                 89************7 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.3
      GDPD_2  11 avwrelvgaG 20 
                 a++re+ ++G
  KKY18161.1 257 AAIREMNRLG 266
                 689***9998 PP

>> OprB  Carbohydrate-selective porin, OprB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.5e-05      0.21     239     312 ..     206     280 ..      93     304 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.5e-05
        OprB 239 kqgnslgveqaltradgsrgltlfaras..vadgnteiwtygvslGlpdlGpfdgRpgDtlGiaagvqplssgara 312
                 ++g s+ v ++l+  +  r +t+  +    +a+ + ++++ g + Gl+d+G  + R+ ++lG ++  +++s+++  
  KKY18161.1 206 QTGSSIAVIRQLWDLG-VRYITITHNCDnpYATAASTVTETGKDGGLTDFGAAAIREMNRLGMMVDLAHVSHRSMR 280
                 4555666666666644.566666666667788899999999******************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 2636.92
//
Query:       KKY18162.1  [L=406]
Description: putative secreted protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-62  209.3   0.1    1.2e-61  208.7   0.1    1.3  1  Arylsulfotran_2  Arylsulfotransferase (ASST)
    1.3e-18   67.0   0.2    3.8e-17   62.3   0.3    2.3  2  Arylsulfotrans   Arylsulfotransferase (ASST)


Domain annotation for each model (and alignments):
>> Arylsulfotran_2  Arylsulfotransferase (ASST)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.7   0.1   1.3e-65   1.2e-61      57     296 ..       1     251 [.       1     254 [. 0.94

  Alignments for each domain:
  == domain 1  score: 208.7 bits;  conditional E-value: 1.3e-65
  Arylsulfotran_2  57 idhHeseitedgtilvtavnvtqadltsvgge.kdgwvldsliyeidietnevlfrwSalehvdeipleesk.aplgdfgrdeskpedyfHlNs 148
                      +d He++i +++t l+++++ ++  lts gg  +++w++d  ++e+di+t++vlf+wS+l+ +d  +       ++ ++g ++s+++dyfH+Ns
       KKY18162.1   1 MDKHEFTIVDEKTGLIQIYHPVPWNLTSYGGSpEQQWIVDARFQELDIATGKVLFEWSSLDYIDPSEGYLPLnPGQAGSGFNSSDAWDYFHINS 94 
                      699*************************************************************98877544478888999************* PP

  Arylsulfotran_2 149 vekfedgdyLiSlrelsslflirpkegkvlWqlqGpkggdfel.dnstfsrQHdariveet..edkivislfnNentdt........nereptt 231
                      v+k +dg+yLiS+r  + +++i +++g v+Wql G+ +++f+l +++ f +QHdar+++ +   +k vis ++N+++ t        + +++++
       KKY18162.1  95 VDKDKDGNYLISARDANAILKIDGQSGDVIWQLGGK-SSNFTLgEEVFFGFQHDARFQARSedGTKEVISFYDNSAHGTengggkevHLAKTSS 187
                      ************************************.9*********************995556789******8888888888887889999* PP

  Arylsulfotran_2 232 glildvdlqnkevtllrklkdaedeissvsqGsyqllpnghvlveegsigrveeydangkivlea 296
                      g+i++vd++++ ++ +++++   d++ s+sqGs+q+lpng+vlv++gs+g v+e+  +g+ +++a
       KKY18162.1 188 GKIVEVDTKTWHAKIVKAFY-PPDDLLSKSQGSTQVLPNGNVLVNWGSEGAVTEFLPDGRPIFHA 251
                      ********************.**************************************999986 PP

>> Arylsulfotrans  Arylsulfotransferase (ASST)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.3   4.2e-21   3.8e-17     128     342 ..      44     236 ..      30     251 .. 0.89
   2 ?   -3.6   0.0      0.43   3.9e+03      16      40 ..     335     359 ..     326     374 .. 0.67

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 4.2e-21
  Arylsulfotrans 128 ievd.ktGkvvkewdlakiLdpyrdallkaakapfgdiagvgagrdWlHiNsveydekddsiivSsRhqsavvkidyrtkkvkWilgdkegweke 221
                      e+d  tGkv+ ew   + +dp++  +l  ++ + g+   + +++d +HiNsv+ d+ d++ ++S R  +a++kid ++++v W lg k+     
      KKY18162.1  44 QELDiATGKVLFEWSSLDYIDPSEG-YLPLNPGQAGSGFNSSDAWDYFHINSVDKDK-DGNYLISARDANAILKIDGQSGDVIWQLGGKSS---- 132
                     589*9******************77.7777889999999999************988.*****************************8763.... PP

  Arylsulfotrans 222 lqkklLtpvdskGkkidleegdfdwtwgqHtavlipngst..iiellvFDNgdgrskeqpallspkdnySraveYkideknmTveqvweygkerG 314
                          +t             g+  +++ qH a++ +++++  +  ++ +DN+   +++    +    ++S + + ++d+k+  ++ v  +  +  
      KKY18162.1 133 ----NFTL------------GEEVFFGFQHDARFQARSEDgtKEVISFYDNSAHGTENGGGKEVHLAKTSSGKIVEVDTKTWHAKIVKAFYPPD- 210
                     ....2555............77889999*******999667799999****99888887666666777************************96. PP

  Arylsulfotrans 315 aefYSsivssveylkdkgnilvdsgaag 342
                      +  S+  +s+++l++ gn+lv+ g+ g
      KKY18162.1 211 -DLLSKSQGSTQVLPN-GNVLVNWGSEG 236
                     .***************.******99865 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.43
  Arylsulfotrans  16 LylvnnlewdekknnlivDtkGevr 40 
                     ++l ++  + ++ +  +vD+kGev 
      KKY18162.1 335 FTLEKKPVKGNSVQAAAVDAKGEVL 359
                     5555554445555677888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2490.78
//
Query:       KKY18163.1  [L=515]
Description: putative mfs drug [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-24   85.3  58.9      3e-10   39.6  15.8    3.0  3  MFS_1     Major Facilitator Superfamily
    0.00039   20.3   4.9    0.00039   20.3   4.9    2.4  2  DctQ      Tripartite ATP-independent periplasmic transporters
  ------ inclusion threshold ------
       0.14   10.9   0.0        0.2   10.4   0.0    1.1  1  Tht1      Tht1-like nuclear fusion protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   8.9   1.7e-13     1e-09       1      80 [.      70     147 ..      70     181 .. 0.89
   2 !   36.2  18.2   5.4e-13   3.2e-09     195     352 ..     265     420 ..     168     421 .. 0.75
   3 !   39.6  15.8   5.1e-14     3e-10       3     148 ..     282     431 ..     280     514 .. 0.85

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.7e-13
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll 80 
                 ++  +fls+++ +i ++++   ++++++ ++ ++++l+t y +++ ++++++Gr+sd fGrr +++++  +f+lg+l + 
  KKY18163.1  70 IFSNVFLSGFDGTISASTYA-VIGSEFN-AANTVSWLTTSYLITSTAFQPLYGRFSDIFGRRACFFTATWTFLLGCLGCG 147
                 57789***************.*******.9999******************************************66554 PP

  == domain 2  score: 36.2 bits;  conditional E-value: 5.4e-13
       MFS_1 195 plvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgr.rrrlllallllllaalgla 292
                 p+ p  ++l+    + + +i+ ++++++ +++l++lpl++q vlg s   +ag+ l +++l++ +++l+ag ++ r+gr    l +++ l++l+ ++++
  KKY18163.1 265 PVMP-MQMLRGTLAI-SNIISNICTGMAAYAFLFMLPLFFQAVLGDS-SSEAGVRLVIPSLATPVGGLIAGIVMSRVGRlSELLRVGCTLMTLGNALIV 360
                 3333.4444444433.467777888899999****************.79*************999**********99955566677777777777777 PP

       MFS_1 293 llavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 ll + + ++ +++ l+ + fg+g+ +ps+l      +  ++++  ++ + +++slg++ g
  KKY18163.1 361 LLRFHDASWKYIVYLIPANFGQGISYPSMLFTFIAAFDHKQQAVSTSMVYLFRSLGTVWG 420
                 77777555555555555999*******999999999999999999999999999999876 PP

  == domain 3  score: 39.6 bits;  conditional E-value: 5.1e-14
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalg.lllll..fasslwlllvlrvlqGl 97 
                 ++ +++++a+++++++lpl+ +  lg s se+g  l++ +l++ v+ l++G ++ r+Gr + +l +g +l+ lg +l+ l  f+  +w  +v  + + +
  KKY18163.1 282 ISNICTGMAAYAFLFMLPLFFQAVLGDSSSEAGVRLVIPSLATPVGGLIAGIVMSRVGRLSeLLRVGCTLMTLGnALIVLlrFHDASWKYIVYLIPANF 380
                 678899999999999999999999999999999999999999999999999999999999999999999999997777776665445569999999999 PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllassl 148
                 g+g+++p+++  + + f +++++  +++++++ slG++ g ++++ +++++
  KKY18163.1 381 GQGISYPSMLFTFIAAFDHKQQAVSTSMVYLFRSLGTVWGVAASSTIIQNI 431
                 999999999999999999999999999999999999999999999888765 PP

>> DctQ  Tripartite ATP-independent periplasmic transporters, DctQ component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   4.9   6.6e-08   0.00039      15     121 ..     229     334 ..     215     347 .. 0.90
   2 ?   -1.9   0.1       0.5     3e+03      83      85 ..     387     389 ..     338     435 .. 0.54

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 6.6e-08
        DctQ  15 lnsslpwteelarylfvwlvflgaalalrrgshirvdllverlpprvrrlleliadllallfaavliwagwlevaaalfeettpvlglplwwvylvlpi 113
                  +++ pw++  +  ++v+ vfl ++ ++ + + +++ ++   + ++  ++ ++i+ +++ ++a  +++++   +++a  + +++  g+ l +++l+ p+
  KKY18163.1 229 GGNNYPWSDKRVISSLVVSVFLLVVFVIVELKTVAIPVMPMQMLRGTLAISNIISNICTGMAAYAFLFMLP-LFFQAVLGDSSSEAGVRLVIPSLATPV 326
                 467888*****************************************************************.*************************** PP

        DctQ 114 gaallalv 121
                 g++++ +v
  KKY18163.1 327 GGLIAGIV 334
                 *9766554 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.5
        DctQ  83 agw 85 
                  ++
  KKY18163.1 387 PSM 389
                 333 PP

>> Tht1  Tht1-like nuclear fusion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   3.3e-05       0.2     363     464 ..      41     145 ..       9     171 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.3e-05
        Tht1 363 llqwksdflsvlkdslkvlqqlrslid.ivekfknvllkelsaiiss..faligeelfa..tlsdlsekllkikkkpiivfgsldiieiriycfkitsw 456
                 llq +   ++v +d+    +  + ++  ++  f nv+l ++   is+  +a+ig e+ a  t+s l    l +      ++g +++i+ r  cf  ++w
  KKY18163.1  41 LLQSNGAANTVIQDKA--WKPPPGFTWiEIAIFSNVFLSGFDGTISAstYAVIGSEFNAanTVSWLTTSYLITSTAFQPLYGRFSDIFGRRACFFTATW 137
                 5665666666666655..44444444315789*********98887556****988764338898988888888777789******************* PP

        Tht1 457 vslvgkiv 464
                   l+g   
  KKY18163.1 138 TFLLGCLG 145
                 99987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3860.48
//
Query:       KKY18164.1  [L=3111]
Description: putative toxin subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.6e-122  406.1   0.1   1.3e-121  405.1   0.1    1.6  1  TcA_TcB_BD     Tc toxin complex TcA C-terminal TcB-binding do
    4.6e-35  120.8   0.9    1.3e-34  119.4   0.9    1.7  1  Neuraminidase  Neuraminidase-like domain
    4.9e-07   29.7   0.0    1.6e-06   28.0   0.0    1.8  1  PA14           PA14 domain
    1.9e-06   27.5   0.2    1.9e-06   27.5   0.2    2.8  3  VRP1           Salmonella virulence plasmid 28.1kDa A protein
  ------ inclusion threshold ------
       0.05   14.0   0.2       0.62   10.5   0.1    2.8  2  GLEYA          GLEYA domain
       0.62    9.6   5.0       0.61    9.6   0.6    2.6  2  CDC13_N        Cell division control protein 13 N-terminus


Domain annotation for each model (and alignments):
>> TcA_TcB_BD  Tc toxin complex TcA C-terminal TcB-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  405.1   0.1  4.5e-125  1.3e-121       1     287 []    2641    2928 ..    2641    2928 .. 0.99

  Alignments for each domain:
  == domain 1  score: 405.1 bits;  conditional E-value: 4.5e-125
  TcA_TcB_BD    1 kqieaaeirleiaekelenqekqienaeevedflrskftneeLYswlesqlsalyyqaYklalslakkaerafqfElgekatsfikegywdslrkgL 97  
                  kqi+aa+ir++ia+ke+enq+kq+++a+e+e++lr+k+tn++LYsw+++++++l+y++Y+ a++la ka ++f++E+ +++t++++ +ywds r+gL
  KKY18164.1 2641 KQILAARIRVDIAKKEIENQQKQLDQATEFEEYLRTKYTNADLYSWMQNTTKSLFYDIYNQAYDLAAKAVKTFKYERPNDRTDYLQPSYWDSGRDGL 2737
                  8************************************************************************************************ PP

  TcA_TcB_BD   98 lagekLlldLkrleaaylernkreleitktiSLrqldplallkLretgkcefelpEvlFdldypghylRriksVsltipcvvgpytsvnatLtllss 194 
                  l+gekL+++Lkrle+ay+e++  ++e++k+iSLr+++p all+Lretg+c+f++pE++Fdld+pghylRrik +s++ipc+vgpytsv+atL+l s+
  KKY18164.1 2738 LSGEKLWMALKRLETAYQENRGYDYELSKNISLRHINPVALLTLRETGSCTFDVPEAVFDLDFPGHYLRRIKCISVSIPCIVGPYTSVSATLRLDSH 2834
                  ************************************************************************************************* PP

  TcA_TcB_BD  195 kvrvkadikavkylek.eedderlvtdliaiqsialSsgqndsGlFelnfrderYlPfEgaGavSsWrlelpkevrqfdletisDvilhlrYTA 287 
                  k+r+++ ++++ y ek  ++d+r++t++++i+si +S++++d+G Fel+f+derY+PfEgaGa+S+W+l+lp+++rqf+++tisDv+lh+rYT+
  KKY18164.1 2835 KYRISSLVEGSGYPEKtGSEDPRFTTTNVPITSIGTSTAHDDAGQFELSFKDERYIPFEGAGAISTWTLDLPDQYRQFNYQTISDVVLHMRYTS 2928
                  **************998899*************************************************************************6 PP

>> Neuraminidase  Neuraminidase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   0.9   4.2e-38   1.3e-34       1     160 [.    1760    1927 ..    1760    1951 .. 0.86

  Alignments for each domain:
  == domain 1  score: 119.4 bits;  conditional E-value: 4.2e-38
  Neuraminidase    1 LevvsgyiekkdnakdtlhffGrtrtaPyrYYyRtldlegelsanaWspWekidldi........kegeyvrpvvangRlylfwpefe....ek 82  
                     Le v+++ie+  ++ +t+hff+rtrtaP +++yRtld+e     ++W pWek+d++i         +g y++pv+  +Rl++f+p+++      
     KKY18164.1 1760 LEPVTLFIEESGSKPKTFHFFARTRTAPFTFWYRTLDFE----TKYWAPWEKMDIEIpsyttrsgANGVYLIPVMLGQRLIVFIPQITvvtiT- 1848
                     6789999********************************....9*********************9**********************88742. PP

  Neuraminidase   83 akskektvddlgdqttgsseesk.weiklawselrdgkWspkqvskdsleleetseeeaekkeslkkvalqasallskd 160 
                      +s++ t ++ + ++ +++ ++k + ik++w+e+r+gkW+p+ v ++s + ++++++ ++k+ ++++++ + ++++++ 
     KKY18164.1 1849 MESSTVTLPSAAGTDYKVPYTPKqYDIKMSWTEYRNGKWTPRYVGSESFQCTQNFTKAEKKEGEQETEDIKVNSSFNDP 1927
                     344444555554444444444446*************************999999999999999999999888888765 PP

>> PA14  PA14 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   5.4e-10   1.6e-06      46     116 ..    1289    1359 ..    1261    1368 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 5.4e-10
                  CEEEEEEEEEBSSSEEEEEEET.TCCCEEEEETTCCCEETT..-TTS--TT----S-EEEEEEE-TT-EEEEEE CS
        PA14   46 fsarwtGylkppesGtYtFkva.sddgvrlsidgelvidnn..gqqekksnadasteesatlyltaGkkYpiri 116 
                   + rw+Gyl++p+++ Y+++v  +d ++ ++id+++  d +  g+  +   a++st++ + ++l+a++ Y +++
  KKY18164.1 1289 KQTRWDGYLLVPQTDDYVLHVNsADKPSGFFIDNKEY-DFEfvGS--GSGSATSSTDRAKPIRLYANQLYRLKL 1359
                  5679*****************999**********996.3331233..3477899****************9997 PP

>> VRP1  Salmonella virulence plasmid 28.1kDa A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.2   6.4e-10   1.9e-06      22     188 ..     213     394 ..     192     419 .. 0.72
   2 ?    2.5   0.1     0.027        80     193     218 ..     426     451 ..     408     460 .. 0.79
   3 ?   -4.3   0.5       3.1   9.4e+03     166     233 ..    2638    2703 ..    2637    2716 .. 0.69

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 6.4e-10
        VRP1  22 GYksiFDivrvsrqrFikrhnedlaqq.aekiyDkAvsyanqlvqk.frqnslrdydga...........rarylseatqrsna..selekklPdyssl 105
                  ++s   ++ +s + F+   ++ la+  a++i+  Avs    ++++ f   +  + +g            r  +  +++ ++++  + l +k  ++++l
  KKY18164.1 213 KFHSANSMATMSSESFLAATKDVLAEPvAQEIHAMAVSRNMAISNTlFSAIQASHGTGMqvldaeemtdnRMDFEGKTQVDVQKivKGLGEKQVNWEAL 311
                 577777888888888888888888875267889999988888765426665665555556777777766544443333222222114456677799999 PP

        VRP1 106 FnepWddfcqkdaiEaldsPvaYLldlYklaldiEkdgene..avklaeRRaDlpaLlldddalnkeipalsivndvLsksarai 188
                 F  + ++  ++++  +  sP+aYL+dl ++  ++ +  +++  + +l +RR+Dl++L l  ++    ip +++ n+v+++ +  +
  KKY18164.1 312 FGSNDEALVEDSS--TVYSPAAYLVDLLQYLRKVKSTKTETnaLGMLLHRRPDLADLQLSRENTEVPIPYIDLANEVMESFIADY 394
                 9988776666655..689*********99998887654333338899*******************************9855554 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.027
        VRP1 193 geaekpvnkvLaetRyPftLPYslpq 218
                  ++e ++   Lae  yP tLPY+ p 
  KKY18164.1 426 QNTEMKAYGFLAESVYPLTLPYHQPI 451
                 5566555569************9885 PP

  == domain 3  score: -4.3 bits;  conditional E-value: 3.1
        VRP1  166 alnkeipalsivndvLsksaraiidqtgeaekpvnkvLaetRyPftLPYslpqqqinkalaekklelg 233 
                  a+ k+i a  i  d+ +k ++  ++q  +a ++ ++ L  t+y +   Ys+ q+ ++  + +  ++  
  KKY18164.1 2638 AIDKQILAARIRVDIAKKEIENQQKQLDQA-TEFEEYL-RTKYTNADLYSWMQNTTKSLFYDIYNQAY 2703
                  788888888888888888888888888887.5666566.57888887788877776665555555555 PP

>> GLEYA  GLEYA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00021      0.62       4      38 ..    1292    1326 ..    1290    1363 .. 0.78
   2 ?   -1.1   0.0      0.87   2.6e+03      18      51 ..    2879    2912 ..    2872    2926 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00021
                  EEEEEE--SSSEEEEEEE.EEESEEEEEESBTTBB CS
       GLEYA    4 elrGYfyapktgtYtfslsnaDdiallwlGdkAfs 38  
                  ++ GY+++p+t +Y +++++aD    +++ +k ++
  KKY18164.1 1292 RWDGYLLVPQTDDYVLHVNSADKPSGFFIDNKEYD 1326
                  689*************************9999775 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
                  EEEE.EEESEEEEEESBTTBBTTBHHS-SEEEET CS
       GLEYA   18 tfslsnaDdiallwlGdkAfscwtranadleaty 51  
                  +f+ls  D+  + + G++A+s wt + +d + ++
  KKY18164.1 2879 QFELSFKDERYIPFEGAGAISTWTLDLPDQYRQF 2912
                  467777899999999999****998855555544 PP

>> CDC13_N  Cell division control protein 13 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.6   0.00021      0.61      70     141 ..     990    1064 ..     962    1105 .. 0.77
   2 ?    0.7   0.3       0.1   3.1e+02     153     185 ..    1987    2019 ..    1972    2035 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00021
                  HHHHHHHHHHHHTT-----ST---...-EEE--GGGT---EEEEEEEEEEETTEEEEEEEEEEE--HHHHHHHTH CS
     CDC13_N   70 larmtisllcqkfdldipeldses...tfiledihlekLCfvkckglyvsneeksslyledikpldlssaiklat 141 
                   +++++s+l+  +d+ +  l s     +f    + l++++f      yv++e  ssl ++dik l   ++i+ + 
  KKY18164.1  990 FLQIKVSQLLPLLDIFTTPLSSPTatlDFLKTCLRLRNMGFNIDEMRYVTTETSSSLSVNDIKVLVTCKQIQDEL 1064
                  578999999999999888888777788999*********************************997766665543 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.1
                  HHHHHHHHHHHHHSTTSS--GGGSTT--HHHHH CS
     CDC13_N  153 iskifdnLikldkdskseFkfvkLenydtelke 185 
                   +k+++n ik  ++ +++F f+k++  + ++ +
  KKY18164.1 1987 TRKLLENDIKSKQSANQQFYFNKVKTNEIKVFS 2019
                  5799*******************9987766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.38u 0.35s 00:00:01.73 Elapsed: 00:00:00.53
# Mc/sec: 17567.51
//
Query:       KKY18165.1  [L=2414]
Description: hypothetical protein UCRPC4_g05115 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.5e-100  333.5   1.0    8.6e-99  330.4   0.4    2.5  2  SpvB             Salmonella virulence plasmid 65kDa B protein
    3.4e-27   95.3   0.5    8.5e-27   94.0   0.5    1.7  1  TcdB_toxin_midC  Insecticide toxin TcdB middle/C-terminal reg
    8.9e-26   90.3  12.0    3.7e-24   85.1   0.0    4.8  5  TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal reg
    4.6e-08   33.5  18.4    0.00023   21.7   0.4    5.5  5  VCBS             Repeat domain in Vibrio, Colwellia, Bradyrhi
     0.0005   20.5  27.9       0.91   10.1   0.1   10.2 10  RHS_repeat       RHS Repeat
  ------ inclusion threshold ------
       0.88   10.1  10.9      0.052   14.0   2.8    2.4  2  ZapB             Cell division protein ZapB
        4.6    6.8   9.3         13    5.3   9.2    1.9  1  NRBF2            Nuclear receptor-binding factor 2, autophagy


Domain annotation for each model (and alignments):
>> SpvB  Salmonella virulence plasmid 65kDa B protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.4   0.4  3.4e-102   8.6e-99       1     289 [.      86     369 ..      86     370 .. 0.94
   2 ?    0.4   0.0      0.11   2.9e+02     211     284 ..    1002    1079 ..     963    1082 .. 0.82

  Alignments for each domain:
  == domain 1  score: 330.4 bits;  conditional E-value: 3.4e-102
        SpvB   1 npatGtaslsvplatsagrsgfapslsLsYdSgaGngpfGlGwslsvasisrktdkgvPrYedasDvfllsgaedlvpvlkkdgekeveeeeekleete 99 
                 np++Gt++l +p+++++grs+f+p+l+LsYdSg Gng+fG+Gw +s++si+r+t+k+vP+Y+d sD f++sgaedlv v+k+  ++             
  KKY18165.1  86 NPQNGTMTLVLPVQVTPGRSEFEPHLDLSYDSGCGNGTFGIGWGVSMDSIARRTSKEVPQYND-SDAFIISGAEDLVRVKKSGIQNIG----------- 172
                 689************************************************************.*************77555443322........... PP

        SpvB 100 leytvrrYrprvegkfarierwtkkadeeevfWrviskdnvttlyGkteesriadped..kkrvfsWlleesvddkGnailYeYkaedeagvde....a 192
                  +y vr+Y+prve +  +ie+w + +de++++Wr+i+ dn+tt+yG++++sri d ++  +kr+fsWl++e++d++Gn i Y+Ykae+++g+++    +
  KKY18165.1 173 -DYLVREYKPRVEVTALKIEQWLNVNDENDIYWRTINGDNMTTIYGRDDASRILDVDEhgRKRIFSWLISETFDSRGNIIRYTYKAENTEGAKHgnlsS 270
                 .3***************************************************99854459****************************9999977777 PP

        SpvB 193 easeanreeeertaqrylkrikYgnrtpeeelllak..elaeeewlfevvfDYGehdeeaptlkeekkWkvRkDpfSsyraGFevRtyrlCrrvLmFhh 289
                  a+e++r++ +r + ++lk+++Ygn+tp+++l  +k    ++ +++f+vv+DYG+hd+  pt+ke ++W++RkDpfS+y+ GFe+Rtyrl rr+LmFhh
  KKY18165.1 271 VAHEQHRTSLSRGRMKHLKSVQYGNKTPNRDLKEWKpsYSDDFQFMFSVVLDYGDHDKIIPTTKEVTPWDLRKDPFSTYKPGFELRTYRLVRRILMFHH 369
                 799*****99******************998888887688899*******************************************************9 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.11
        SpvB  211 krikYgnrtpeeelllakelaeeewlfevvfDYGeh.....deeaptlkeekkWkvRkDpfSsyraGFevRtyrlCrrv 284 
                   +i Ygn++++      +++++e+  f    DY +      +  +p +++e+++++   p S   aGFe+  +  C+ +
  KKY18165.1 1002 ATIAYGNEHSSLPEHEDQSKQKESIFFYTEKDYTNAvddgtSFCKPLIAAERQYRILDYPLSGL-AGFELIAKDSCQSI 1079
                  6799****99888888888999999999999999987776667788888899999998888875.79999999999876 PP

>> TcdB_toxin_midC  Insecticide toxin TcdB middle/C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.5   3.3e-30   8.5e-27       3     140 ..     915    1040 ..     913    1045 .. 0.92

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 3.3e-30
  TcdB_toxin_midC    3 yRaLkGsllrsevYgldateratvpYtvteqryqvRllqeagdereavalvlvlEslsyhYeriakDPqvqqsitLevDeYGeplksvsvaY 94  
                        RaLkG+ lr+e++++da+++a+ pY+v e ry+v ++q++++++  ++ v ++Esl+ hYer+ +DP+ ++ +tLev++YG + k++++aY
       KKY18165.1  915 FRALKGAELRTEIFSDDASKQADKPYSVVERRYTVLRIQASDETTPGIYRVNPMESLTSHYERNMEDPRQEHVLTLEVNSYGDVVKTATIAY 1006
                       6******************************************************************************************* PP

  TcdB_toxin_midC   95 pRrkkpeanPypdtlpeelwessvdeqQtklrltetessvtnlied 140 
                       +  +  +  P          e+ ++++Q+ + + +te+ +tn+++d
       KKY18165.1 1007 GNEH--SSLP----------EHEDQSKQKESIFFYTEKDYTNAVDD 1040
                       *886..3333..........35688999999999999999999965 PP

>> TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.028        73      26      52 ..     558     584 ..     545     597 .. 0.79
   2 ?    2.3   0.1     0.036        91      28      48 ..     618     638 ..     601     647 .. 0.75
   3 !    5.1   0.0    0.0052        13      22      52 ..     667     697 ..     651     710 .. 0.76
   4 !   85.1   0.0   1.4e-27   3.7e-24      32     178 .]     728     880 ..     719     880 .. 0.87
   5 ?   -6.2   3.1         7   1.8e+04     116     139 ..    2385    2407 ..    2379    2409 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.028
  TcdB_toxin_midN  26 vedtnlslaDldGdGladlvltipsag 52 
                      ++d  ++ +Dl G+Gl dl+++    +
       KKY18165.1 558 ISDPSVQRVDLTGNGLQDLLWATDDVN 584
                      67788899*************987766 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.036
  TcdB_toxin_midN  28 dtnlslaDldGdGladlvlti 48 
                      + +l l D++GdGl d+v  +
       KKY18165.1 618 QDKLYLHDMSGDGLTDVVHVS 638
                      5568899*********66544 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0052
  TcdB_toxin_midN  22 tstsvedtnlslaDldGdGladlvltipsag 52 
                      t  +     ++l+D+dG G+ dl+ +  + g
       KKY18165.1 667 TVNQFTHARVRLVDVDGSGTTDLIYLTAGGG 697
                      5555667789************998877766 PP

  == domain 4  score: 85.1 bits;  conditional E-value: 1.4e-27
  TcdB_toxin_midN  32 slaDldGdGladlvltipsag........tgavqkatsllgkpgLLkkidnelGgtteveYapssaekresrekgsvknsilPfavqvvsevta 117
                       ++Dl G+G+  l +t ps +        + +        +kp+LL+k  n++G + ++ Y+ps+   + +  +g  ++  l f+vq + ++  
       KKY18165.1 728 FAIDLLGNGTTCLCWTRPSHEaghseslfYIDL----MSGQKPHLLTKYSNGMGLSAAITYRPSTWFYLSDLYQGRTWKTKLSFPVQCIDRLHE 817
                      578***************999888866555554....55689**************************************************** PP

  TcdB_toxin_midN 118 ddgvsgktlvtqYrYedGyydkkereFlGFktvkqtdpeg..teeetevvitstyrktlvktg 178
                       d +   t +t+Y+Y+dG+yd kereF+GF++v+q d+e    +  t+++ +++ +k +++tg
       KKY18165.1 818 VDEIASTTRTTRYTYHDGFYDTKEREFRGFGMVEQWDAEDynASIVTPFTRPPIHTKMWFHTG 880
                      ************************************996411334466666677777777775 PP

  == domain 5  score: -6.2 bits;  conditional E-value: 7
  TcdB_toxin_midN  116 taddgvsgktlvtqYrYedGyydk 139 
                       +a+d v+ +t+v++ +Y++ yy+ 
       KKY18165.1 2385 SATD-VTNNTYVSNDTYNNYYYND 2407
                       4455.4889999999999999986 PP

>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   1.5   0.00048       1.2       1      60 [.     459     525 ..     459     536 .. 0.74
   2 !    9.1   1.2   0.00074       1.9       1      61 []     515     578 ..     515     578 .. 0.92
   3 ?    4.3   0.3     0.024        61       1      24 [.     567     590 ..     567     616 .. 0.71
   4 !   21.7   0.4   8.9e-08   0.00023       1      60 [.     625     690 ..     625     691 .. 0.78
   5 !   16.0   1.5   5.4e-06     0.014       1      56 [.     680     737 ..     680     738 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00048
        VCBS   1 DldgDGrlDlvvandgglrvyrnn......gdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60 
                 Dld+DG + l+v  dg+++  rn+      +d +f +++  + ++s+++    ++ DlD+ G lD++
  KKY18165.1 459 DLDQDGSPGLLVREDGAWHYQRNDlallhdKDESFGPIRILANHPSQTAGgDFYFEDLDHKGALDVI 525
                 9************777755544443333227999999987655554444425999999999999987 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00074
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslggsgggt..gvavgDlDgDGdlDllv 61 
                 Dld  G lD+++++ dg+l  y ++    ++d +k    +++++   +v  +Dl g+G  Dll+
  KKY18165.1 515 DLDHKGALDVIYLDkDGRLDGYQQRVHEEWEDYRKFNAVPNMNISdpSVQRVDLTGNGLQDLLW 578
                 99999********999**********99*******99999888885679999**********96 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.024
        VCBS   1 DldgDGrlDlvvandgglrvyrnn 24 
                 Dl g+G++Dl++a+d+ + + +++
  KKY18165.1 567 DLTGNGLQDLLWATDDVNGLTWQK 590
                 99***********97544444443 PP

  == domain 4  score: 21.7 bits;  conditional E-value: 8.9e-08
        VCBS   1 DldgDGrlDlvvandgglrvyrnngdGtftdvtktslgg........sgggtgvavgDlDgDGdlDll 60 
                 D+ gDG+ D+v +++g++  + n g G+f   +++++++         ++++ v+++D+Dg G +Dl+
  KKY18165.1 625 DMSGDGLTDVVHVSNGKISYWPNLGHGKFG--AEVIMSDcprldtvnQFTHARVRLVDVDGSGTTDLI 690
                 889*********************988876..344333344455454555556*************98 PP

  == domain 5  score: 16.0 bits;  conditional E-value: 5.4e-06
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtk.tslggsgggtgvavgDlDgDGd 56 
                 D+dg G  Dl++++  gg +vy n++ + +++ +  +s+++ ++  +v + Dl g+G 
  KKY18165.1 680 DVDGSGTTDLIYLTaGGGATVYYNQAGNGWSSGERlNSFPEINDLSSVFAIDLLGNGT 737
                 9************97899*******8666776644379***************99995 PP

>> RHS_repeat  RHS Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.59   1.5e+03      11      22 ..     244     255 ..     238     259 .. 0.70
   2 ?    3.1   0.5     0.055   1.4e+02       6      23 ..     814     834 ..     813     836 .. 0.63
   3 ?    2.8   0.0     0.069   1.8e+02       7      27 ..    1252    1272 ..    1250    1278 .. 0.84
   4 !    8.0   0.0    0.0016       4.2      19      34 ..    1527    1543 ..    1519    1546 .. 0.80
   5 ?   -2.3   0.0       2.7   6.9e+03       7      19 ..    1561    1572 ..    1554    1585 .. 0.49
   6 ?    2.4   0.1     0.094   2.4e+02      19      37 ..    1714    1733 ..    1708    1735 .. 0.75
   7 ?    2.4   1.5     0.093   2.4e+02      13      36 ..    1779    1804 ..    1772    1808 .. 0.69
   8 ?   -1.0   0.1       1.1   2.8e+03      18      30 ..    1844    1856 ..    1836    1862 .. 0.68
   9 !   10.1   0.1   0.00035      0.91      14      34 ..    1889    1914 ..    1883    1919 .. 0.70
  10 ?   -2.9   0.0       4.2   1.1e+04      23      30 ..    2052    2059 ..    2047    2070 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.59
  RHS_repeat  11 tdpsGrvttYtY 22 
                  d  G++ +YtY
  KKY18165.1 244 FDSRGNIIRYTY 255
                 466677777777 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.055
  RHS_repeat   6 rLtev..tdpsGrvttYtY.D 23 
                 rL ev   + ++r+t+YtY D
  KKY18165.1 814 RLHEVdeIASTTRTTRYTYhD 834
                 5666633345667799***55 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.069
  RHS_repeat    7 LtevtdpsGrvttYtYDaqGr 27  
                    +vtd +G++++   Da+G 
  KKY18165.1 1252 PKQVTDSNGNRVQTAFDALGT 1272
                  6789*******9999999995 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0016
  RHS_repeat   19 tYtYDaqGrl.ttlTdp 34  
                    +YDa+Gr+ +t+Td 
  KKY18165.1 1527 IVHYDALGRViLTITDS 1543
                  559*******7789996 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 2.7
  RHS_repeat    7 LtevtdpsGrvtt 19  
                  +te+ d+s r ++
  KKY18165.1 1561 VTEK-DASNRLVQ 1572
                  4444.55555544 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.094
  RHS_repeat   19 tYtY.DaqGrlttlTdpdGr 37  
                  t+t  Da++r  + Td+ G 
  KKY18165.1 1714 TFTRfDALHRAIESTDARGG 1733
                  67666888888888888874 PP

  == domain 7  score: 2.4 bits;  conditional E-value: 0.093
  RHS_repeat   13 psGrvttYtY.DaqGrl.ttlTdpdG 36  
                   +G++t+Y Y ++  rl +  T ++G
  KKY18165.1 1779 GNGVQTSYVYnNETRRLaQRSTHTAG 1804
                  58********5555666755444444 PP

  == domain 8  score: -1.0 bits;  conditional E-value: 1.1
  RHS_repeat   18 ttYtYDaqGrltt 30  
                  + Y YD+ G+l +
  KKY18165.1 1844 RDYVYDSIGQLIQ 1856
                  4588888888743 PP

  == domain 9  score: 10.1 bits;  conditional E-value: 0.00035
  RHS_repeat   14 sGrvt.....tYtYDaqGrlttlTdp 34  
                  +G++      tY+YD  G++t++  +
  KKY18165.1 1889 NGQSLrryieTYQYDRTGNITEMKHA 1914
                  67773234557**********96554 PP

  == domain 10  score: -2.9 bits;  conditional E-value: 4.2
  RHS_repeat   23 DaqGrltt 30  
                  D++G++++
  KKY18165.1 2052 DDLGNVVS 2059
                  66666654 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   1.1      0.49   1.3e+03      18      54 ..    2154    2191 ..    2147    2203 .. 0.68
   2 ?   14.0   2.8     2e-05     0.052      14      52 ..    2289    2327 ..    2278    2335 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.49
        ZapB   18 dtitlLqmeieeLkeen.eelkeenreleeeneqlkee 54  
                  d+i++ +  +++ ++   ++ ++e + le +n++  + 
  KKY18165.1 2154 DRIAKIKTANRDSQRGYnASHNQEENDLENQNQKIDNS 2191
                  67777777777777765155566777788888876654 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 2e-05
        ZapB   14 qkaidtitlLqmeieeLkeeneelkeenreleeeneqlk 52  
                  + + ++ t+L  e+ +L +en+ l +en +l++en+ lk
  KKY18165.1 2289 KRLTEENTKLNAENLRLNKENSRLGKENSRLNRENKDLK 2327
                  678899999**************************9998 PP

>> NRBF2  Nuclear receptor-binding factor 2, autophagy regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   9.2    0.0052        13      68     127 ..    2271    2325 ..    2185    2331 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0052
       NRBF2   68 ckgskapkDDktkleeqatkiadLkrlvelLlaenerLrkenkqLkaekaRLqkepleke 127 
                   +  k+ k+D  +l   + ++++       L aen rL ken +L  e++RL++e   k+
  KKY18165.1 2271 TNPLKTMKNDNLRLGGRNKRLTE---ENTKLNAENLRLNKENSRLGKENSRLNREN--KD 2325
                  44457788888888777655444...445788999999999999999999999887..44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.10u 0.31s 00:00:01.41 Elapsed: 00:00:00.49
# Mc/sec: 14741.57
//
Query:       KKY18166.1  [L=820]
Description: putative six-hairpin glycosidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   12.7   0.1       0.08   11.7   0.1    1.4  1  Trehalase  Trehalase


Domain annotation for each model (and alignments):
>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   4.5e-06      0.08     309     361 ..     179     231 ..     178     236 .. 0.97

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.5e-06
                 HHHHHHHHHHHHHHCCCHCC-CCHHHHHHHHHHHHHHHHHHHCEETTTTEE-- CS
   Trehalase 309 LNallyklekdiaefedklgdsetseefeekaekrkkaidkvLWneeagvylD 361
                  Na++++  + i+e+++ +gd++ +  +++ a+  +++++++L++++ ++++D
  KKY18166.1 179 FNAYMVAGARAISEVASLTGDTALAMSWNTTASSLYSKMEDMLYSNDINFWID 231
                 6**************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (820 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 5485.27
//
Query:       KKY18167.1  [L=339]
Description: hypothetical protein UCRPC4_g05117 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-31  109.0   0.1    3.2e-31  108.7   0.1    1.1  1  Glyco_hydro_43  Glycosyl hydrolases family 43


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7   0.1   1.8e-35   3.2e-31       4     215 ..      42     268 ..      39     329 .. 0.85

  Alignments for each domain:
  == domain 1  score: 108.7 bits;  conditional E-value: 1.8e-35
                     ESBCSSEESEEEEEETTCEEEEEEEBTEESEEEEEEESSSSSCEEEEECEESTTTCSTTTEECTEEEEEEEE.TTEEEEEEEEEETTCCCSEEEE CS
  Glyco_hydro_43   4 PvlsgfypDpsilrvgedyYlvtstfewfpglrifhSkdLvnWkqvgrvlerrsqlsmkgknasWAPeiskh.dgkyylyytatkkgeakqgifv 97 
                     P +s   pDp+ + v+ +yY +++++   +++++  S+d  +W + +     ++  s+++ ++ WAP++ +  dg + lyy+a  +++ +++++ 
      KKY18167.1  42 PTMSANFPDPTFIEVDATYYAFATNN-GEQNIPVAVSSDFNTWDLQDGYDALPDPGSWASGDV-WAPDVVQVdDGSFVLYYAAELADHSTHCVGA 134
                     8889999**************99997.689*****************9999999999999999.****9977369*******9999********* PP

                     EEESSTTS--EECEESSCS....TSSECEEEEEEETTSEEEEEEEEEHCC.............CSEEEEEEEEEETTTTEEEEEEEEEEECGCCT CS
  Glyco_hydro_43  98 vtadspeGpwsdpiklkts....gssgiDpslfedddGkkYlvwgqwdkr.............eghseiylaeldddtlklkgektklikagtel 175
                     +ta sp+Gp++ + +  +      +++iDps f d dG++Y++++   ++                  i++++   d+l+l+g++ ++i++++  
      KKY18167.1 135 ATASSPRGPYTPQSSPLICpsasVGGAIDPSGFLDTDGTRYILYKIDGNSvpggpncgntatnSYSTPILIQKVGSDGLTLEGTA-QQIMTQD-P 227
                     ***********99888766788999*******************9877778999***99887666778*****************.7777777.6 PP

                     CTTBBEEEEEEEEETTEEEEEEE.ESTSSTTEEEEEEEESS CS
  Glyco_hydro_43 176 kglkvtEGPhlykrdgyyYLlaa.eggtgseyavvvarsks 215
                     ++  ++E+P l   dg y+L+++  + t+s+y+v++a+s++
      KKY18167.1 228 STEPLVEAPSLAIVDGVYFLFFSsGCYTDSDYDVKYATSQN 268
                     888899**************99945689999******9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 2106.44
//
Query:       KKY18168.1  [L=543]
Description: hypothetical protein UCRPC4_g05118 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.7e-153  509.8   0.8   7.4e-140  467.0   0.2    2.2  2  DUF3405   Protein of unknown function (DUF3405)


Domain annotation for each model (and alignments):
>> DUF3405  Protein of unknown function (DUF3405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   1.6e-15   2.9e-11       1      64 [.      76     134 ..      76     137 .. 0.94
   2 !  467.0   0.2  4.1e-144  7.4e-140     110     517 .]     134     541 ..     133     541 .. 0.89

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 1.6e-15
     DUF3405   1 cfdRfgRygpYGlgeskkegglgvgeegekegsekvweektekvdwrkvdWgelqerCleaNke 64 
                 c+dR +R++pYGlg +++egglg+g eg++eg ++     te vdw+kv+  ++q+rC ++N++
  KKY18168.1  76 CYDRINRFAPYGLGRRTTEGGLGIGLEGDTEGVSA-----TEIVDWTKVNLTDAQDRCQKKNSH 134
                 9*****************************99765.....578*******************97 PP

  == domain 2  score: 467.0 bits;  conditional E-value: 4.1e-144
     DUF3405 110 kkkkRtAvvlRtwtgykyteedilnlRalisElsLksGGeYevhllvhvkdeelpiwadeetyqkvleeavpeEfrglatLwsekqmeslYpgleeesf 208
                 ++++RtA+v+Rtw++y+yt+ +++ lRa+isElsL+sGGe++vh+l+hv+d++lpiwa+ee+y++vl+e++p+Ef+g+ tLws +qm+++Yp  + +s+
  KKY18168.1 134 HHQRRTAFVIRTWHTYEYTAYHVMMLRAIISELSLASGGEFTVHFLIHVQDDNLPIWASEEVYNSVLSESLPPEFQGMGTLWSVAQMRLIYPPPFPDSI 232
                 5789*******************************************************************************************9999 PP

     DUF3405 209 tr..dlevhgvyrsaflplqlFaqqhpeydyfWnwEmDvRytGhyyelldklsefakkqpR.kglweRnerfYipsv.hGswedFtqavekqteekgek 303
                  +    +++g+yrs+++p+q+Fa +hpe+dyfW+wEmD+R tGhy ell+ ++++a++q    +lweR+++++i s+  Gs+++F +av+++t++    
  KKY18168.1 233 VNfsGGDIYGAYRSMHFPMQYFASKHPEFDYFWQWEMDMRVTGHYLELLEGITQWAESQKVdDYLWERSSKYFISSLfNGSYSEFAAAVREETSS---- 327
                 998889***************************************************9985268**********99636*************999.... PP

     DUF3405 304 tvwGpvrvkevkplgpkpptseeedkyewGvgEeADlitlnpifdpeettWvlrddvtgykneteakppRraaiitasrlSrrLLeamheetarkkhtm 402
                 ++  p+ +    +  p+p +++ +d++        D+i+lnp+fdpe+t W +++d+tg+ +++   pp raa+it+sr+SrrLL +mheet r+k+tm
  KKY18168.1 328 PIARPQLK---GENLPNPLQTDISDHV------ITDFISLNPMFDPEHTRWAFSNDITGFGDTR---PPTRAALITTSRMSRRLLLLMHEETYRNKRTM 414
                 77777766...2233556655555544......47*************************6655...******************************** PP

     DUF3405 403 fsEmvpatvALhhGlKavyaphpvyvdrkwplealekvfnagrkg....asggartsvfgker........ehnlkgltwyynsefaeelyrrwlglke 489
                 f+Em+pa++AL++GlKav +phpvy+dr+w +++ + +fn+++ +    a+g++r+  + +++        eh +kg+t+y n++fa+el+rrwlg+++
  KKY18168.1 415 FPEMFPASLALQYGLKAVSVPHPVYFDRDWAAKHADVIFNNAKLDdvskAIGMGRGGDYYHDEggsvfgpgEHVFKGSTYYSNAGFAGELWRRWLGIED 513
                 ****************************************6544333334555554444444445555555**************************** PP

     DUF3405 490 eneGgeeeeeeeegrmclpsmllhpvKe 517
                 e++  + e  e+ grmclp mllhp+Ke
  KKY18168.1 514 EQRDHALEIGEGGGRMCLPMMLLHPIKE 541
                 987666666689**************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3638.64
//
Query:       KKY18169.1  [L=557]
Description: putative major facilitator superfamily transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-31  108.6  29.6    1.3e-28   99.9  21.4    2.4  2  MFS_1      Major Facilitator Superfamily
    8.8e-12   44.6   0.6    8.8e-12   44.6   0.6    2.9  2  Sugar_tr   Sugar (and other) transporter
  ------ inclusion threshold ------
       0.13   12.3   0.0       0.36   10.8   0.0    1.7  1  TetR_C_14  MftR C-terminal domain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9  21.4   2.2e-32   1.3e-28      14     343 ..      36     479 ..      24     482 .. 0.74
   2 !   21.5  21.5   1.5e-08     9e-05       7     179 ..     337     529 ..     331     545 .. 0.81

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 2.2e-32
       MFS_1  14 ilgpalplalaedlg.....ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpaga 107
                 + ++a++  + +dl+      +   +gll++++a++ a +++++G++sd++Gr++v+l+gl + al++l++ +a+ +w+ l++r++ G+   + +++++
  KKY18169.1  36 CSILAYTYVMVQDLHngddtNASFYAGLLVSAFAVAEAMTAMIWGAVSDKYGRKPVVLMGLGGVALSSLIFGLAQKYWVALLARFIGGAL-NGNVAVMQ 133
                 33444444666776633332244449*****************************************7777788***************9.6999**** PP

       MFS_1 108 aliadwfpk.eergraigllsagfslGailgpllggllasslg................Wravfyilaivsllafvlfllllpeepperkrkspkeee. 188
                 +++a++++k e+ +ra+++    ++lG+i+g + gg+la+ +                 + ++ +++ +v +la+v +++ll e++p  ++k +k +  
  KKY18169.1 134 TMVAEMVKKpEQEPRAYAVQPFVWALGSIVGSAMGGFLAQPARfypslfpedglfgrypYLLPNLVAVAVIVLAIVQGIFLLEETNPLFHKKDDKSDQp 232
                 *********99****************************777799**********66555555666666666666666666655555555555555558 PP

       MFS_1 189 ..........................kgtgpaplvpawkallkdp.............................................vl....wil 212
                                           +   +a++++++++++k+p                                              +    w++
  KKY18169.1 233 nndsilhnetspllrvtsrrisdgnqSTMSRASIIDGLREIRKQPafleeslptsnnqtfdirrssfgtmysisngpahmdppqsdpspkTFnfavWMI 331
                 888899999999999999999888885555555555666666666444444444444444444444444444444444444444444444114456888 PP

       MFS_1 213 lialllfffgfsglltllply.............lqevlglsglllaglllallalvgail.allagrlsdrlgrrrrlllallllllaalglallavt 297
                   al+l++   +++ + +p+y             l   lg++ +  +g+++a+ +++++++ a+++ +++ ++g ++  ++ ++l  ++++++ +l++ 
  KKY18169.1 332 TGALVLVSYHQMAFAAIMPVYlldnpditghrldLIGGLGYT-VHDVGVFMAVNGVIALFIqAFVFPFYVEKIGVWKSFFWLIVLYPISYIIMPFLSML 429
                 8888888888888********777777777776777777777.9999999*******9999999**********9999999999999999999999999 PP

       MFS_1 298 ...ssavllllvlvliGfglgfvfpsllalasdla.ppeeagtasglfnt 343
                      +v ++++++l  f++ +v p++l l+ + + +p   g+++gl+++
  KKY18169.1 430 pinILPVGIYVSMALQNFFGIIVIPCALILLKNACpSPLVLGKVNGLAMS 479
                 77566666666777777777777777777777777334566777777765 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 1.5e-08
       MFS_1   7 lsalarsilgpalplalaed.............lgispseigllltlyalgaavaslpl.GrlsdrfGrrrvlllglllfalglllll.f.a...sslw 86 
                 l+++  +++++++p +l ++             lg++++ +g  +++ ++ a++ + ++  + ++++G  + +++ ++l+ ++ ++++ f +   +++ 
  KKY18169.1 337 LVSYHQMAFAAIMPVYLLDNpditghrldliggLGYTVHDVGVFMAVNGVIALFIQAFVfPFYVEKIGVWKSFFWLIVLYPIS-YIIMpFlSmlpINIL 434
                 55555566677777666555777777888888899************9999988888886999********************.666665335565544 PP

       MFS_1  87 ..lllvlrvlqGlgagalfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslgWravfyilaivsllafv.lfllllpeepper 179
                    ++v+ +lq +++ +++p +++l+    p     g+++gl++++   +  l p++ g+++ ++g    ++ ++i++++++v l  +++p+e+++r
  KKY18169.1 435 pvGIYVSMALQNFFGIIVIPCALILLKNACPSpLVLGKVNGLAMSSCCGARTLSPPVVGIIYGAGGSAIGWWSCGIFAIIGVVqL--FFVPREDVDR 529
                 344*****************************5688999999999888888*************9999999*********97755..7777776655 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.6   1.5e-15   8.8e-12      24     161 ..      37     171 ..      33     231 .. 0.86
   2 ?   -9.9  16.5         3   1.8e+04     300     433 ..     389     522 ..     374     524 .. 0.61

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 1.5e-15
                 HHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHH CS
    Sugar_tr  24 tllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvl 122
                 ++l++ +   ++ +++++ ++s + gl+vs+f v +++++++ g ++d++GRk++ l++   +  ++++ ++a+   +++v +++R++ G   G + v+
  KKY18169.1  37 SILAYTYVMVQDLHNGDDTNASFYAGLLVSAFAVAEAMTAMIWGAVSDKYGRKPVVLMGLGGVALSSLIFGLAQ---KYWVALLARFIGGALNGNVAVM 132
                 5566677777888888888899****************************************************...9********************* PP

                 HHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 123 vPmyisEiApkklRgalvslyqlaitfGilvaaifglgl 161
                  +m +  + +++   +   ++ + +++G +v++ +g +l
  KKY18169.1 133 QTMVAEMVKKPEQEPRAYAVQPFVWALGSIVGSAMGGFL 171
                 999888887888888888999999999999998877655 PP

  == domain 2  score: -9.9 bits;  conditional E-value: 3
                 HHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHT.....TTHHHHHHHHHH CS
    Sugar_tr 300 nfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpq.....svRskalaiava 393
                  f++ fv  f v+++G  + +++ ++ + i  +i+   +l +   +    +++ v +al   +f++ + p+  +l+    p+     +v ++a++ +  
  KKY18169.1 389 LFIQAFVFPFYVEKIGVWKSFFWLIVLYPISYIIMP--FLSMLPIN-ILPVGIYVSMALQ-NFFGIIVIPCALILLKNACPSplvlgKVNGLAMSSCCG 483
                 244444445677777777777777777777777774..33333332.2344444444443.56666777777777777666544444677777777777 PP

                 HHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHH CS
    Sugar_tr 394 vnwlanflisllfpiiteaigggyvflvfaglavlfiifv 433
                 +  l+  ++++++    +aig +++  +fa++ v+ ++fv
  KKY18169.1 484 ARTLSPPVVGIIYGAGGSAIG-WWSCGIFAIIGVVQLFFV 522
                 888888888888888888888.888888888877777776 PP

>> TetR_C_14  MftR C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.1e-05      0.36      44      95 ..     127     177 ..     122     185 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.1e-05
                 HHHHHHHHHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHHHHHHHHH-TTS- CS
   TetR_C_14  44 lryaawrevvAefvAeRtgtdaddlvprtvaaavlaaalaayeqwladedad 95 
                  ++a ++++vAe+v ++  +++++++++ + +a+ +++ +a+  +la++++ 
  KKY18169.1 127 GNVAVMQTMVAEMV-KKPEQEPRAYAVQPFVWALGSIVGSAMGGFLAQPARF 177
                 578999********.9999****************************99755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 3587.14
//
Query:       KKY18170.1  [L=173]
Description: hypothetical protein UCRPC4_g05120 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.024   14.9   0.1      0.033   14.4   0.1    1.3  1  RET_CLD4  RET Cadherin like domain 4


Domain annotation for each model (and alignments):
>> RET_CLD4  RET Cadherin like domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.9e-06     0.033      55      94 ..     100     139 ..      60     142 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.9e-06
    RET_CLD4  55 saedtsgtlyvndtealrrpecqelqytvvaqekqtkkqa 94 
                 + e+   +  v ++e ++++ c+elq tv  +e+q++++ 
  KKY18170.1 100 TVEEYPEVTAVVNSEGVQTQVCEELQLTVYPTEEQKRREM 139
                 5566666778999**********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1269.98
//
Query:       KKY18171.1  [L=418]
Description: putative paf-acetylhydrolase family member [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-34  119.7   0.0    1.4e-34  119.2   0.0    1.0  1  PAF-AH_p_II      Platelet-activating factor acetylhydrolase, 
    1.2e-06   27.6   0.0     0.0035   16.3   0.0    2.1  2  Chlorophyllase2  Chlorophyllase enzyme
    1.5e-06   27.6   0.1     0.0015   17.8   0.0    2.5  2  Hydrolase_4      Serine aminopeptidase, S33
    9.5e-05   23.1   0.0    0.00015   22.4   0.0    1.4  1  Abhydrolase_6    Alpha/beta hydrolase family
     0.0014   17.7   0.1     0.0061   15.6   0.0    2.0  3  Chlorophyllase   Chlorophyllase
     0.0014   18.5   0.0     0.0046   16.9   0.0    1.7  2  Abhydrolase_3    alpha/beta hydrolase fold
  ------ inclusion threshold ------
       0.13   12.3   0.0       0.41   10.7   0.0    1.7  2  Thioesterase     Thioesterase domain


Domain annotation for each model (and alignments):
>> PAF-AH_p_II  Platelet-activating factor acetylhydrolase, isoform II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   0.0   5.6e-38   1.4e-34      28     356 ..      18     367 ..      13     382 .. 0.82

  Alignments for each domain:
  == domain 1  score: 119.2 bits;  conditional E-value: 5.6e-38
                  STTSEEEEEEEEE..S.SSSS-EEESS-SH..HHHHHHHHHHTS-HHHHHHH.HHHH....TT-EEEEEET--B--S.....S-EEEEEEE--TT--T CS
  PAF-AH_p_II  28 klrgvflRlyypld.kadedredelWlPkk..eyaqGlsevlkasrlllnllfkllv....gslrlpvkknellktk.....ekyPlivFsHGLgafR 113
                  +l++v + l+yp++  a  ++ ++ W+ k      +G++ +++++++l + lf+ ++    g l++p++ + +l+         +P+ivFsHG++++R
   KKY18171.1  18 QLETVLFSLFYPAEkGAISSHPKHFWISKPisLVGEGFARFAHVNNFLFRNLFTFGLwalgGRLQIPAEVDVPLHGSaatiaPVFPMIVFSHGMASSR 115
                  57999********95567888999***7661145579***************997655555899**********98865554559************* PP

                  TTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT.......--EEEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----S CS
  PAF-AH_p_II 114 tlYsalcielAskGfvvaavEHrDesAaatyvlkdklaaeeeeevvesrekewiklrkvkeeeevklrneqvkqRaqEcskaLkllreinlGepvenv 211
                  + Y  +c elAs+G++vaa+EHrD s  a+ ++    ++++    v ++ +  ik ++    +  +l++ q+ +R+ E+ +++++lr+i+ G+     
   KKY18171.1 116 NDYTQYCAELASRGYIVAAIEHRDGSSPASVIFSAGGDEKV----VFNIRPDDIKSKTS--IDIDELKRIQLAFRQAEVEETVEALRSIQVGRGGALF 207
                  ********************************877664444....44445555665554..455678999********************87754332 PP

                  ....S--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHH....HH-TTS-EEEEES---TTS-GGGGGG--S-EEEEEETTT--HHHHHHHHT..... CS
  PAF-AH_p_II 212 ....ldsdfdlqqlKdnldtskvaviGHsFGgAtviksl....sedteFrcaialDaWmlPveeevyskvrqPllfinsekfqtaedikkmkk..... 296
                       ++   lq+  + l   +++v+GHs+G+  ++++l    s+d   r ai+lD+     +    + v  P+l+i s+++ + ++++  +      
   KKY18171.1 208 knnpRGEGATLQDWTGRLSFDNLVVAGHSYGATLALQTLrgvpSQDLPIRGAIILDPGKQ--SGRLNKDVSVPTLVIHSDSWSKRVSMFFGRPhfqvv 303
                  2224777888**************************998555568899********8654..34566899*************999988666667777 PP

                  ......T--TTS-EEEEEETT--GGGGSGGGGSS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHH CS
  PAF-AH_p_II 297 ......vvslkkeskvitvkGsvHqnfsDftfvlgkligkvlklkgeidpeealdiankaslaFLq 356
                        +  + k    +t  G+ H + +D +++ + l+    ++   id + +++  ++ s  FL+
   KKY18171.1 304 kelvegINRRGKAAWFLTSVGTSHPSVTDAPLIEPLLLS--WTTGSTIDVKDGIREYVQVSHDFLN 367
                  788888888999999*******************98876..5566788999999999999988886 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.4e-06    0.0035      15      52 ..     100     137 ..      89     192 .. 0.86
   2 !    9.3   0.0   0.00019      0.48      89     131 ..     227     269 ..     218     294 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.4e-06
  Chlorophyllase2  15 geYpvllflhGylllnslYsqlLkhiashgfivvapql 52 
                        +p+++f hG+    + Y+q  +++as g+iv a + 
       KKY18171.1 100 PVFPMIVFSHGMASSRNDYTQYCAELASRGYIVAAIEH 137
                      579******************************99854 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00019
  Chlorophyllase2  89 lsklalsgHSrGgktafalalgkaktslkfsaligvdPvagas 131
                      +++l+++gHS G+  a++   g  + +l +  +i +dP +   
       KKY18171.1 227 FDNLVVAGHSYGATLALQTLRGVPSQDLPIRGAIILDPGKQSG 269
                      789***********************************87643 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     6e-07    0.0015       6      40 ..     104     138 ..      99     145 .. 0.94
   2 !    6.9   0.0    0.0013       3.4      77     109 ..     229     264 ..     218     283 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 6e-07
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaqGfavyalDhr 40 
                   +v++HG+a++ + y + +++La +G+ v+a+ hr
   KKY18171.1 104 MIVFSHGMASSRNDYTQYCAELASRGYIVAAIEHR 138
                  69*******************************98 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0013
  Hydrolase_4  77 plfllGhSmGGliallyllrypd...kvaglilsaP 109
                  +l++ GhS G+++al+ l   p+    ++g+i+  P
   KKY18171.1 229 NLVVAGHSYGATLALQTLRGVPSqdlPIRGAIILDP 264
                  689***************666665567888888766 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   5.9e-08   0.00015       1     117 [.     105     308 ..     105     379 .. 0.56

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 5.9e-08
                    EEEE--GC.....GCHHHH.HHHHCCTCEEEEE--TTS..T...S-GGCS...................................--HHHCHHHHH CS
  Abhydrolase_6   1 vlllHGagssassWlvapL.aallaagvhvlapDlpGh..G...rsdppp...................................ldledladlaa 55 
                    +++ HG  ss+ ++   +  a+l+++g+   ++ +  h  G                                            l+++  a++++
     KKY18171.1 105 IVFSHGMASSRNDYT--QYcAELASRGY---IVAAIEHrdGsspA----SvifsaggdekvvfnirpddiksktsididelkriqLAFRQ-AEVEE 190
                    577777776666664..55455555555...34455554552220....12222233333333333333444444333333333333333.55555 PP

                    HHCCTT..............................TTSEEEEEETCHHHHHHHHHHCC.......EE.EEES-...................... CS
  Abhydrolase_6  56 lldelaa............................gggpvvlvGHSlGGalalaaapla.....lvvg.vlldp.............pp....... 97 
                    ++++l++                            + ++ v+ GHS+G++lal+++++      +++g ++ldp             p        
     KKY18171.1 191 TVEALRSiqvgrggalfknnprgegatlqdwtgrlSFDNLVVAGHSYGATLALQTLRGVpsqdlPIRGaIILDPgkqsgrlnkdvsvPTlvihsds 286
                    5555555666677777777777777778877777777778**************444447999988889*****6666666665554113233333 PP

                    ..----TTTS----TTHHHHHH CS
  Abhydrolase_6  98 ..talpagllaaalelllalla 117
                        + + ++++ +++++ l  
     KKY18171.1 287 wsKRVSMFFGRPHFQVVKELVE 308
                    3323333334444444443333 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.5   3.8e+03     172     191 ..      37      56 ..      34      64 .. 0.79
   2 !   15.6   0.0   2.4e-06    0.0061      41      78 ..      97     134 ..      84     145 .. 0.89
   3 ?   -1.9   0.0      0.51   1.3e+03     121     158 ..     229     267 ..     222     288 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.5
  Chlorophyllase 172 ykpnsfnleiPvtviGsGlG 191
                      +p+ f ++ P+ ++G G+ 
      KKY18171.1  37 SHPKHFWISKPISLVGEGFA 56 
                     469999999*******9987 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 2.4e-06
  Chlorophyllase  41 aeaGtypvvlflhGtllsnkfyskllnhiashGfivva 78 
                     + a ++p+++f hG+  s ++y++    +as G+iv a
      KKY18171.1  97 TIAPVFPMIVFSHGMASSRNDYTQYCAELASRGYIVAA 134
                     56779*******************************88 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.51
  Chlorophyllase 121 klalvGhsrGGktafalalgys.seltfsaliGvdPvaG 158
                     +l ++Ghs G   a+    g   ++l +   i +dP + 
      KKY18171.1 229 NLVVAGHSYGATLALQTLRGVPsQDLPIRGAIILDPGKQ 267
                     678999999998887655554338888888888888653 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         1   2.6e+03     168     201 ..     103     136 ..      88     140 .. 0.61
   2 !   16.9   0.0   1.8e-06    0.0046      49     112 ..     188     268 ..     184     295 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1
                    -EEEEEETT-TTHHHHHHHHHHHHHTT--EEEEE CS
  Abhydrolase_3 168 ptlvvvaefDplrdegeayaerlraagvevelie 201
                    p++v+  +    r++  +y+++l++ g  v  ie
     KKY18171.1 103 PMIVFSHGMASSRNDYTQYCAELASRGYIVAAIE 136
                    6666666666666666666666666666555555 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.8e-06
                    HHHHHHHHHHHHHTH..................HHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE-SST CS
  Abhydrolase_3  49 vedalaalrwlaeqa..................welgadpsrivlaGdSaGGnlaaavalrardegepkvagqvliyPvtdl 112
                    ve+ ++alr ++  +                  w+ ++ ++++v+aG S G++la+++++ + ++  ++++g +++ P+++ 
     KKY18171.1 188 VEETVEALRSIQVGRggalfknnprgegatlqdWTGRLSFDNLVVAGHSYGATLALQTLRGVPSQ-DLPIRGAIILDPGKQS 268
                    566666666666655666666667777777766888999********************999997.789*********8754 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.6   4.1e+03      89     133 ..     137     184 ..     120     198 .. 0.58
   2 ?   10.7   0.0   0.00016      0.41      68     101 ..     230     263 ..     225     276 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.6
                   HC.T-SEEEEEEESCCCCCCHHCHHCCCHTTHHT..HHHHHCCTTHH.H CS
  Thioesterase  89 sq.Glavkslflidssapseteaqeasrraedee..fveeltdlggt.e 133
                    + G+ ++s++++++    + + + +++  +++    ++el++++ +  
    KKY18171.1 137 HRdGSSPASVIFSAGGDEKV-VFNIRPDDIKSKTsiDIDELKRIQLAfR 184
                   33377777777776665555.5555555555555556677777766643 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00016
                   EEEEEETHHHHHHHHHHHHHHHCT-SEEEEEEES CS
  Thioesterase  68 yalfGhSlGgllAfevArqLesqGlavkslflid 101
                   ++++GhS+G++lA ++ r   sq l++++ ++ d
    KKY18171.1 230 LVVAGHSYGATLALQTLRGVPSQDLPIRGAIILD 263
                   689***********99999888888888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2900.87
//
Query:       KKY18172.1  [L=504]
Description: putative dna mismatch repair protein msh2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-10   40.6   0.0    1.1e-09   38.6   0.0    2.1  1  CDT1_C    DNA replication factor Cdt1 C-terminal domain


Domain annotation for each model (and alignments):
>> CDT1_C  DNA replication factor Cdt1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   6.1e-14   1.1e-09       2      92 ..     358     457 ..     357     461 .. 0.95

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 6.1e-14
      CDT1_C   2 llerIraKearqalaamtreeelerrsallgrlpdvarilrllf........vaekksalpmeevvkklkdSlrtpvskeeaekhlrlLa..elaPdWv 90 
                 ll+rI +K+  ++  + +++++l   +a  +rlp++++il+++         +a ++  +++ ++ + +kdS+r+p+ k+e+   l+lL   e+   Wv
  KKY18172.1 358 LLDRILEKQRLALSNPSPSSADLDLHRAK-HRLPELVEILSGIQqqrtrnqnLAISRFPFSFGQLSQMIKDSFRSPIGKDEIWLSLKLLGmeEVGRGWV 455
                 9****************************.8*******************99999**********************************8888888999 PP

      CDT1_C  91 ti 92 
                 +i
  KKY18172.1 456 RI 457
                 87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1211  (0.0675442); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 3037.95
//
Query:       KKY18173.1  [L=143]
Description: putative calcofluor white hypersensitive protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0012   18.8   4.7     0.0012   18.8   4.7    1.4  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
  ------ inclusion threshold ------
       0.13   12.0   9.4       0.16   11.7   9.4    1.1  1  SpoIIIAH        SpoIIIAH-like protein
       0.25   11.2   3.5       0.29   11.0   3.5    1.2  1  PIN_8           PIN like domain


Domain annotation for each model (and alignments):
>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   4.7     2e-07    0.0012       2      62 ..      72     132 ..      71     136 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2e-07
                     HHHCCCCHHHHHCCHHHCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH CS
  Apolipoprotein   2 leesldelkayaeeleeqlaplaqelrdrlskeleelrarlraeleevrarlepyrdevqe 62 
                     l+++ +e+ka+a+e e+  ++++++ +++++k ++e++a+l+a +++  + +e++++e++ 
      KKY18173.1  72 LDDTVAEAKAKAAEAEKAAEQYSKDGKAKFEKYSKEAKAELNATIDQFDKTVEQKTSEAKS 132
                     899*******************************************************986 PP

>> SpoIIIAH  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   9.4   2.8e-05      0.16      15     137 ..      16     128 ..       6     135 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.8e-05
                 XXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXX--HHHHHHHHHHHH CS
    SpoIIIAH  15 vagYlnftedsgkkaaetaeteqeesekaeigddkekdessaasaeaesssetesesseksdiassdedeadeltsetasaaasasdyfaeakleReqk 113
                  agY++++   + kaa++  +  +++++a+i+     +    +++++++ ++ +s+++++ d+++ ++      + ++a+a+++a++y ++ k + e+ 
  KKY18173.1  16 GAGYYLYNAGGDPKAAQKYAEADASKVTAKIKG----ELPGRGKEAEKRGEAFASQAGKTLDDTVAEA------KAKAAEAEKAAEQYSKDGKAKFEKY 104
                 599*****9876666666666666666666666....2222222222222233333333333333222......3334444556788888888888888 PP

                 HHHHHHHHHHHHT-TTS-HHHHHH CS
    SpoIIIAH 114 rsknketLqeiinnenlseeekqe 137
                   ++k +L+++i+  +++ e+k +
  KKY18173.1 105 SKEAKAELNATIDQFDKTVEQKTS 128
                 888888888888888888888764 PP

>> PIN_8  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.5   4.8e-05      0.29      57     120 ..      67     129 ..      29     138 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.8e-05
       PIN_8  57 kayedlekeleklkkaaekkleealkkwakkkaldteelrkelkkqleelkeelkaeleelkks 120
                 +a ++l ++++++k++a+ + e+a+++++k+ + ++e+++ke k++l++  +++ ++ e+++++
  KKY18173.1  67 QAGKTLDDTVAEAKAKAA-EAEKAAEQYSKDGKAKFEKYSKEAKAELNATIDQFDKTVEQKTSE 129
                 445556666655555555.466788888888888888888888777777777773333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2089  (0.116515); expected 358.6 (0.02)
Passed bias filter:                      858  (0.0478554); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.53
# Mc/sec: 810.74
//
Query:       KKY18174.1  [L=577]
Description: putative peroxin pex23-like-penicillium chrysogenum [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.50
# Mc/sec: 3497.79
//
Query:       KKY18175.1  [L=701]
Description: hypothetical protein UCRPC4_g05060 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.52
# Mc/sec: 4059.00
//
Query:       KKY18176.1  [L=473]
Description: putative mfs monocarboxylate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-18   64.8  65.9    2.8e-17   62.7  45.7    2.1  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        0.1   12.9   0.1        0.2   12.0   0.1    1.5  1  MORN_2    MORN repeat variant


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7  45.7   3.1e-21   2.8e-17       4     320 ..      86     389 ..      83     398 .. 0.74
   2 !   16.1  12.1   4.5e-07     0.004      54     171 ..     338     460 ..     335     470 .. 0.89

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 3.1e-21
       MFS_1   4 aaflsalarsilgpalplalaed......lgispseigllltlyalgaavaslplGrlsdr.fGrrrvlllglllfalglllllfasslw.lllvlrvl 94 
                 ++f+ +++ + l+ ++    ++       +  s s i+++ ++ ++  +   +++G++ dr +  + +l +g ++ ++g+++l+++ ++w  ll+  + 
  KKY18176.1  86 CGFMLFFNTWGLLNTFG-VFQTYyesgqlFSESSSNISWIGAIQTFCLLCVGFITGPVFDRgY-LKTLLGIGTFGVVFGFMMLSLSKTFWeCLLAQGFC 182
                 44444444444444443.333331123336688899*************************44.555************5555578************* PP

       MFS_1  95 qGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgp 193
                  G+g+g+lf  g+a++  +f + + g+aigl+++g+s G i+ p++   l+ ++g+ ++  +l++++l  ++l +  +   ++++ r +          
  KKY18176.1 183 VGIGCGCLFVPGVAILPTYFRR-KLGLAIGLAASGSSTGGIIYPIVFYRLVNQIGFGWSVRVLGFLALGTLLLPISCMK-MRVKPLRAR---------- 269
                 *********************9.**********************************************9774444442.222222222.......... PP

       MFS_1 194 aplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalgla 292
                  +l++  + +++d ++  ++i+ +++f+g++ +l+++  +     +++++ l+ +l+++l +++++++ l  +lsd++g+   l+l+++++l++ ++ +
  KKY18176.1 270 -ALID--QTVFTDWPFITFIIGTVIGFIGIYVMLFYISYF-GLEQKITNASLSFYLVPILNAASIFGRTLPNALSDKVGP---LNLIIPGALICGIINF 361
                 .2333..578888855445555555555666666666665.55555556689999999999999999**********886...7777777777777777 PP

       MFS_1 293 llavtssavllllvlvliGfglgfvfps 320
                  +   ++   ++++ + +Gf++g++ ++
  KKY18176.1 362 CMISVHDLGGIVVSALAFGFFSGVFIGL 389
                 7777766666666666688888877544 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 4.5e-07
       MFS_1  54 rlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlgagalfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslg. 149
                 +lsd++G+  +++ g+l+ ++  ++++++ + l  ++v+ +  G+++g+++ +  + +a ++++ ++ g  +g+  ++++ +++ g++ +g +++++  
  KKY18176.1 338 ALSDKVGPLNLIIPGALICGIInFCMISV-HDLGGIVVSALAFGFFSGVFIGLPPVCFAMLTKDkTKVGTRMGMGFSFIAGSVLAGAPGSGDILQNYTk 435
                 69********************5555554.7777999*********99999999999999999999*************************99999999 PP

       MFS_1 150 ...Wravfyilaivsllafvlflll 171
                    W+++++  +i  ++a+ +fl+l
  KKY18176.1 436 dlnWTGIWLYGGISNVVAAAVFLAL 460
                 999****999999999998855444 PP

>> MORN_2  MORN repeat variant
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.2e-05       0.2       3      18 ..     102     117 ..     102     120 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.2e-05
      MORN_2   3 GeekeYyenGklkeel 18 
                 G++++Yye+G+l +e 
  KKY18176.1 102 GVFQTYYESGQLFSES 117
                 899*********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 2856.16
//
Query:       KKY18177.1  [L=524]
Description: putative phosphoglycerate mutase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3530.50
//
Query:       KKY18178.1  [L=947]
Description: hypothetical protein UCRPC4_g05063 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (947 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.52
# Mc/sec: 5462.01
//
Query:       KKY18179.1  [L=206]
Description: putative nitroreductase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-18   66.4   0.0    3.7e-18   66.2   0.0    1.0  1  Nitroreductase  Nitroreductase family


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   2.1e-22   3.7e-18       1     170 []      11     181 ..      11     181 .. 0.93

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 2.1e-22
                     HHH--B---B-S--.--HHHHHHHHHHH.HTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGGHHHHHHHHHHHHSSEE CS
  Nitroreductase   1 irkRrSiRkFddep.vpkeelekileaa.rraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrkeelklkaqkalagapvl 93 
                     i++RrS+ ++++e  +++ee++kile+a   +Ps ++++ +r+v++  ke+ ykl+++a e ++    ++e++ + +     +++ +++++a   
      KKY18179.1  11 IKERRSVYTLSPETtISDEEIKKILETAlEECPSTFGSYTTRLVLL-VKEEHYKLWDIATEVIKGV-TPEEQWEKST-----KGRLAMFRNAYGS 98 
                     89**************************666***************.99*********99877766.6666788876.....**********999 PP

                     EEE......---TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S..SEEEEEEEEE- CS
  Nitroreductase  94 ivi......vatldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdeaaeevrkllglpdeeeivvliavGy 170
                     +++      ++ l+++    ++  +++a + +++    +++a + +Glg+  +++    +++v++  ++p ++++v+ +++G+
      KKY18179.1  99 VLYfedpenTRLLEDKYPFIKDNFAPWAEHASAMHQFVVWTAFANAGLGANLQHYSPLIDDKVKAAYNIPATWKLVAQMPFGK 181
                     9999****9999999999999999999999999999999******************99999*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 1260.71
//
Query:       KKY18180.1  [L=379]
Description: putative alcohol dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-20   72.9   0.2    3.3e-20   72.0   0.2    1.5  1  ADH_N            Alcohol dehydrogenase GroES-like domain
    8.6e-14   51.6   0.1      2e-13   50.4   0.1    1.6  1  ADH_zinc_N       Zinc-binding dehydrogenase
    8.1e-05   22.5   0.0    0.00012   21.9   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
     0.0011   20.0   0.0     0.0018   19.3   0.0    1.3  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.027   14.4   0.0      0.045   13.8   0.0    1.3  1  Methyltransf_32  Methyltransferase domain
      0.085   12.4   0.2        0.3   10.6   0.1    1.8  2  MTS              Methyltransferase small domain
       0.14   11.5   0.6       0.28   10.4   0.5    1.4  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
       0.19   11.6   0.2        0.3   10.9   0.2    1.3  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.2   1.5e-23   3.3e-20       2     109 .]      35     153 ..      34     153 .. 0.90

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 1.5e-23
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS...--TT-EEEE-SEEE..-SSSHHHHTT-......GGG-TTBEETTT CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkk...lkvGdrVvveplis..cgeCaaCkege......enlCeeakllgv 89 
                 +++li+v aa+ C++D  + +g+ + ++ lp +  HE +Ge++++gp+ ++   l+vG++V v+pl+   c +C +C++++      + +C++a++lg+
  KKY18180.1  35 HDLLIRVLAASYCHTDAVFSSGEMQHNQTLPRVGCHEYSGEIVAFGPSAENlygLTVGSKVGVPPLSYhpCTKCFECTRDDgdgsrySPHCPYAETLGL 133
                 689********************9**************************9999*********9987556*******98642222224789******** PP

                 SS-SSSBSEEEECGGGEEEE CS
       ADH_N  90 sldGgfaeyvvvpekklvkl 109
                 ++dGgf++y++v+++++v++
  KKY18180.1 134 TVDGGFQQYCLVDSRQIVPI 153
                 ****************9986 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.1     9e-17     2e-13       1     128 [.     195     337 ..     195     339 .. 0.82

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 9e-17
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHT.............TESEEEETTTCHHHHHHHHHT........TTSSEEEEEESSCSHHHHHHHHHC CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakkl.............Gadevinykeadlverikelt........ggegvdvvfecvGsgatleaalkl 78 
                 g+G++++q+A++lG ev avd s++ lel++               G  ++      ++++ + ++         g+ gvd+++  + s+a+++ a++l
  KKY18180.1 195 GLGHLGIQFAAHLGKEVLAVDASDKSLELLQNVikglgskgnqikvGDARTT-----KPEDLLVSIGehssdaapGELGVDAAILLADSQAAMDLATAL 288
                 89******************************88977666444444322222.....333333333344455557899********************* PP

                 EEEEEEEEECSCTSSEEEEEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHH CS
  ADH_zinc_N  79 lkpgGrlvvvGggkgeeefdlrnlllkeksilGsllgslreefkealdll 128
                 lk +G++vvv +++ +  +++  l++++++i+Gs++++ + +++e+++++
  KKY18180.1 289 LKNHGTIVVVSFPERGFNMSATALVFRDIRIVGSWVAK-HWQLREMMQFA 337
                 ************999999********************.78888898885 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   5.3e-08   0.00012       5     113 ..     187     301 ..     183     354 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 5.3e-08
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsn..............ev 83 
                      + ++ +G G G+l++++a  lg  +ev  +D s +++el ++  + lg++  + ++gd+ + +++       Dl++s               ++
       KKY18180.1 187 IAIVGAGGGLGHLGIQFAAHLG--KEVLAVDASDKSLELLQNVIKGLGSKGNQIKVGDARTtKPE-------DLLVSIgehssdaapgelgvDA 271
                      66777899**********8876..69***********************************6773.......8888887777777777666666 PP

  Methyltransf_31  84 lnaladpdkileeiervlkpggilliedpr 113
                        +lad+++++  ++ +lk++g +++ ++ 
       KKY18180.1 272 AILLADSQAAMDLATALLKNHGTIVVVSFP 301
                      689**********************99876 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   8.1e-07    0.0018      18     117 ..     264     356 ..     250     371 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 8.1e-07
                   H-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHHHH----EEEEEEGGG CS
  ADH_zinc_N_2  18 tggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaalieeGklrpvvdrvfplee 114
                    g+ gvD+++ +++++a+++ + ++l+++G++v+++ p   ++ ++ a     r ++++    + a+ + + l+e++++  + +++pvv  +f+l e
    KKY18180.1 264 PGELGVDAAILLADSQAAMDLATALLKNHGTIVVVSFP--ERGFNMSATALVFRDIRIVGSW-V-AK-HWQ-LREMMQFANQYNVKPVVK-TFSLPE 353
                   45568*********888878888888999****99964..7888888888888999998888.3.44.578.*****************7.9***99 PP

                   HHH CS
  ADH_zinc_N_2 115 aae 117
                   ++ 
    KKY18180.1 354 INA 356
                   863 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     2e-05     0.045      21      78 ..     181     235 ..     171     281 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2e-05
  Methyltransf_32  21 akesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkf 78 
                       k+ +++ +v +G G g+L+   a    +++ +v+++da+++  e  +++ + lg+k 
       KKY18180.1 181 IKNASKIAIVGAGGGLGHLGIQFAA---HLGKEVLAVDASDKSLELLQNVIKGLGSKG 235
                      45677899***************99...89***************9999999999665 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00013       0.3      28      89 ..     182     243 ..     175     255 .. 0.78
   2 ?   -1.4   0.0      0.64   1.4e+03     122     139 ..     282     299 ..     273     319 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
                 HCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-ST CS
         MTS  28 pkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdv 89 
                 +++ +  ++  G G G lg+++a++  + ev +vd++ ++le+ ++ ++  + +  ++   d+
  KKY18180.1 182 KNASKIAIVGAGGGLGHLGIQFAAHLGK-EVLAVDASDKSLELLQNVIKGLGSKgNQIKVGDA 243
                 55555567888999**********9999.8*************99988877777555555555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.64
                 HHHHHHHEEEEEEEEEEE CS
         MTS 122 iaeAkeaLkegGeLliVa 139
                 +  A + Lk++G++++V 
  KKY18180.1 282 MDLATALLKNHGTIVVVS 299
                 455788899999998886 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.5   0.00013      0.28      27      69 ..     183     226 ..     174     254 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00013
                  ---EEEEESTS.HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH CS
  AlaDh_PNT_C  27 epakvlviGgG.vaGlqAiatakglgakVtvlDvrparleqles 69 
                  +++k+ ++G+G   G   i+ a+ lg +V ++D + + le l++
   KKY18180.1 183 NASKIAIVGAGgGLGHLGIQFAAHLGKEVLAVDASDKSLELLQN 226
                  5789*****76268*********************999999887 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00014       0.3       1      58 [.     186     246 ..     186     272 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
                 EEEEE--.SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH..HHHCCTTTTSS-HH CS
     3HCDH_N   1 kvaviGa.GtmGagiaavfasagleVvlvdiseealekalekiek..sleklvekgklkee 58 
                 k+a++Ga G +G+   + +a+ g eV  vd s+++le  ++ i+   s  ++++ g + + 
  KKY18180.1 186 KIAIVGAgGGLGHLGIQFAAHLGKEVLAVDASDKSLELLQNVIKGlgSKGNQIKVGDARTT 246
                 69*****678999999999999**************9999988874333344444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.35s 00:00:00.92 Elapsed: 00:00:00.51
# Mc/sec: 2218.80
//
Query:       KKY18181.1  [L=1576]
Description: putative wd40 repeat-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-06   26.2   0.0    1.6e-05   24.9   0.0    1.7  1  NACHT          NACHT domain
      7e-05   22.7   0.0    0.00015   21.6   0.0    1.5  1  PGAP1          PGAP1-like protein
     0.0002   21.6   0.3       0.63   10.4   0.0    4.9  5  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
     0.0012   19.6   3.3       0.36   11.8   0.1    4.7  3  WD40           WD domain, G-beta repeat
     0.0015   18.1   0.0     0.0031   17.0   0.0    1.5  1  DUF676         Putative serine esterase (DUF676)
     0.0015   19.2   0.1     0.0035   18.0   0.1    1.6  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.058   13.3   0.0       0.15   12.0   0.0    1.6  1  DUF829         Eukaryotic protein of unknown function (DUF829


Domain annotation for each model (and alignments):
>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   6.3e-09   1.6e-05       1     137 [.     420     569 ..     420     592 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 6.3e-09
                 SCEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-.....-HCHHHCCCCTS--SSS-C......................CHHH CS
       NACHT   1 rlvilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna..rsladllfsqlpepaapvse......................vwav 75 
                 r+++  G +G GK++L+  ++  +      +   +++Ff +  + +rs  +   sla +++ + pe +++ +                        + +
  KKY18181.1 420 RILWYSGSPGGGKSVLASFIIKHLHGMGVGA---QFFFFRFDNQPKRSISTclKSLAWQIANDHPEFNRRLNDlseaglnlektdavslwqmvfeSILF 515
                 578999******************9999777...67777777777666555778888888888888888888899999999999977766664333333 PP

                 HCCSCCCEEEEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCT CS
       NACHT  76 llelperlLlilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdlee 137
                  +el++ l  ++DglDe +t  +q     +   + + i++ +l+  +ll+t+r +    ++ 
  KKY18181.1 516 QIELANPLYWVIDGLDESET--PQ-----LLLEIFRAIPR-SLTPIRLLITSRKTDTISMQV 569
                 445666666**********9..55.....23444455555.677789999999887744443 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   5.8e-08   0.00015      92     133 ..     194     241 ..     105     256 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 5.8e-08
       PGAP1  92 sviliGHSmGGivaraaltlkn......yikqsvntiltlasPhalpp 133
                  +i + HSmGG+va+ a+ l +       i +s++ ++ la+Ph  + 
  KKY18181.1 194 PIIFVVHSMGGLVAKKAILLGQndeeyqQIIRSISGVIFLATPHRGSG 241
                 58999************999888899888899************9875 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         7   1.8e+04       7      21 ..     844     858 ..     843     860 .. 0.84
   2 ?    0.2   0.0      0.37   9.4e+02      35      87 ..     981    1032 ..     968    1066 .. 0.60
   3 ?    3.0   0.0     0.051   1.3e+02      35      66 ..    1169    1200 ..    1135    1220 .. 0.80
   4 !   10.4   0.0   0.00025      0.63      12      78 ..    1294    1360 ..    1290    1369 .. 0.89
   5 ?    0.0   0.0      0.42   1.1e+03      14      50 ..    1382    1415 ..    1377    1456 .. 0.66

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 7
  ANAPC4_WD40   7 mDLiAlatedgellv 21 
                  +DL Al+t++ +l +
   KKY18181.1 844 KDLSALVTSRRKLDA 858
                  79******9998875 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.37
  ANAPC4_WD40   35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87  
                   +++++ +++++ + +g  La  y  ++ +  ++ sgk++ ++    + + ++l
   KKY18181.1  981 TSHGEPITAFCLNRKGDTLAT-YGLSTTKCWSIPSGKLLCTVANVPDVKAMTL 1032
                   566666777777777776664.3444445555555555555544444333333 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.051
  ANAPC4_WD40   35 dkedsevrsLaWkpdgklLavaysdgevrlld 66  
                   ++   +  ++a +pdgkl++ + sdg++ + +
   KKY18181.1 1169 SEAHARADEIAASPDGKLFVTSDSDGSITVWN 1200
                   5566677889999**************98865 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00025
  ANAPC4_WD40   12 latedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsv 78  
                   +++e+g + ++ ++  r w++++  + +++++L W+ d ++ + a   ge+ +  +  +k  ++++ 
   KKY18181.1 1294 IGSEEGVVTLHDTESGRSWEVTKFYNYHNISELIWSRDSSIVVAADLSGEIVITRVTMEKSKQTVTL 1360
                   678999999************99******************************99998887777665 PP

  == domain 5  score: 0.0 bits;  conditional E-value: 0.42
  ANAPC4_WD40   14 tedgellvfRlngqrvwtleedkedsevrsLaWkpdg 50  
                   ++ + ll+ R +  ++w+l   +e+++++ ++  + g
   KKY18181.1 1382 SDAKLLLLIRHDLSQLWSL---EENKTISTMSLAEAG 1415
                   4555678899999999*99...455555555444444 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.051   1.3e+02      18      35 ..    1034    1051 ..     969    1052 .. 0.66
   2 !   11.8   0.1   0.00014      0.36      16      38 .]    1178    1200 ..    1161    1200 .. 0.81
   3 ?   -0.8   0.0       1.3   3.4e+03      10      29 ..    1321    1339 ..    1312    1346 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.051
                  EETTSSEEEEEETTSEEE CS
        WD40   18 fspdgawlasGsdDgtvr 35  
                  fs   + l++G+dD+ +r
  KKY18181.1 1034 FSERDSNLITGGDDRIIR 1051
                  333333345799899887 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00014
                  EEEETTSSEEEEEETTSEEEEEE CS
        WD40   16 lafspdgawlasGsdDgtvriWd 38  
                  +a spdg+++++++ Dg++ +W+
  KKY18181.1 1178 IAASPDGKLFVTSDSDGSITVWN 1200
                  567*********966*******8 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.3
                  SSSEEEEEEETTSSEEEEEE CS
        WD40   10 HssvtslafspdgawlasGs 29  
                  H +++ l +s+d++ +++++
  KKY18181.1 1321 H-NISELIWSRDSSIVVAAD 1339
                  6.689999*******99765 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.2e-06    0.0031      78     129 ..     192     240 ..     106     251 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.2e-06
      DUF676  78 nkkiSfvghSlGgliaraaiaklkekemtlkeaikglepvtfitlasPhLGv 129
                 +  i fv hS+Ggl+a+ ai + ++ e+ ++++i+ +  v f  la+Ph G+
  KKY18181.1 192 KVPIIFVVHSMGGLVAKKAILLGQNDEE-YQQIIRSISGVIF--LATPHRGS 240
                 45688****************8887765.6889999999988..79***886 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   1.4e-06    0.0035       1     125 [.     106     261 ..     106     334 .. 0.56

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.4e-06
                    EEEE--GC................GCHHHH.....HHHHCCTCEEEEE--.....TTSTS-GGCS--HHH.C........HHH..HHHHCCTT..T CS
  Abhydrolase_6   1 vlllHGagss...........assWlvapL.....aallaagvhvlapDl.....pGhGrsdpppldled.l........adl..aalldelaagg 64 
                    ++++HG+g++           +  W  + L     a  ++a++  +++ +     pG+Grs     d++  l         d+  + ++ ++    
     KKY18181.1 106 IVFIHGLGGDrqktwsqnhdpQFFW--PGLwlpyeADIGSARI--FSFGYkaevrPGTGRSIANIGDFAKeLlfemkfgkTDDgqDYAIGKV---- 193
                    89****9966744444444442223..2224444666666666..54444555559999887777777443134444444222245577777.... PP

                    TSEEEEEETCHHHHHHHHHHCC................EE.EEES-..----TTTS----TTHHHHHHTT-CCCCH CS
  Abhydrolase_6  65 gpvvlvGHSlGGalalaaapla..............lvvg.vlldppptalpagllaaalelllallallrllawl 125
                     p++ v HS+GG++a     +                ++g ++l++p    + gl++ ++++l a ++ +++ a+l
     KKY18181.1 194 -PIIFVVHSMGGLVAKK---AIllgqndeeyqqiirSISGvIFLATPH--RGSGLADVLARILSASMQ-APR-AFL 261
                    .58**********8888...5555688999999776445589999943..333332222222222222.222.222 PP

>> DUF829  Eukaryotic protein of unknown function (DUF829)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.7e-05      0.15      66     130 ..     182     253 ..     143     295 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.7e-05
      DUF829  66 y..........wpilfhvfsngGpllylallaalqkaesfkkllpelkglvwDSaPgaghylksakafsavlpks 130
                             pi+f v s+gG ++  a+l   q++e+++++++ ++g+++  +P++g+    a++ + +l  s
  KKY18181.1 182 TddgqdyaigkVPIIFVVHSMGGLVAKKAIL-LGQNDEEYQQIIRSISGVIFLATPHRGSG--LADVLARILSAS 253
                 3444456777789***********9999999.7899999********************87..444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.05u 0.34s 00:00:01.39 Elapsed: 00:00:00.53
# Mc/sec: 8999.38
//
Query:       KKY18182.1  [L=374]
Description: putative vegetative incompatibility protein 4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-35  123.3   0.2    1.7e-35  122.6   0.2    1.3  1  Fructosamin_kin  Fructosamine kinase


Domain annotation for each model (and alignments):
>> Fructosamin_kin  Fructosamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   0.2   9.4e-40   1.7e-35      39     266 ..      64     312 ..      47     332 .. 0.87

  Alignments for each domain:
  == domain 1  score: 122.6 bits;  conditional E-value: 9.4e-40
  Fructosamin_kin  39 eeqrfFvklne.kealemFeaEaesLealaetqtirvPkvlavGelkdas....fLvleyLelklekkesaaelgqqLaklHr..aseqkefGf 125
                       + r+Fvk+++ ++ + m e+E +s+++l +  + +vPk++ +G+ k ++    f + eyL++  ++  +  +l +++a+lHr  +s   +fGf
       KKY18182.1  64 TQARYFVKTSTvATGRLMMEGEFNSMSELYKWMPNFVPKPHSWGKYKVTEpetyFFICEYLDMI-DRMPDPSDLCSKVAQLHRisTSPDGRFGF 156
                      5679*******899999***************************9987666677*********9.888999************7777889**** PP

  Fructosamin_kin 126 dvdntigktpqpNewqssWaeFfaeqRlgvqlelakekglefakieelvervaell..........skhqpkpsllHGdLWsgNaaltkd.gep 208
                      +v +  g+tpq   w++ W++ f++  l + +++  e ++ ++ +++l +++ + +           ++++kp+l+H dLW+gN+ +  d g+ 
       KKY18182.1 157 HVSTCQGQTPQAVGWEDTWTALFTK-LLHHVVDIDMETNGYWEGLDQLEKKIFSHVipllignlerDGRSVKPCLIHADLWEGNIGTLYDnGNL 249
                      ***********************85.6999***********9999999999998888999*****999*****************99888799* PP

  Fructosamin_kin 209 vifdPaayygdrEvdlamtelf.ggfps....efyegYqsivpldegyeeRkelYqLYhlLnh 266
                      vifd  ayy+++E++ +  + + + ++s    ++y+ Y +     e++e+R+++Y +Y+ + +
       KKY18182.1 250 VIFDAGAYYAHNEMETGDWRCYyNKIHSstygKVYKRYYRPSEPREEWEDRNRMYCVYYNVMY 312
                      ****************97765414555511114566666666666*************97654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.33s 00:00:00.92 Elapsed: 00:00:00.51
# Mc/sec: 2187.96
//
Query:       KKY18183.1  [L=512]
Description: putative major facilitator superfamily [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-44  152.9  17.5    1.1e-44  152.9  17.5    1.9  2  MFS_1            Major Facilitator Superfamily
    3.7e-17   62.3   2.3    3.7e-17   62.3   2.3    2.3  2  Sugar_tr         Sugar (and other) transporter
      3e-05   22.6   2.3    5.8e-05   21.7   2.3    1.4  1  TRI12            Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
      0.058   12.3  15.0        0.3    9.9   0.2    3.4  3  MFS_1_like       MFS_1 like family
        1.5    7.1   9.5      0.023   13.1   1.9    1.7  2  MFS_3            Transmembrane secretion effector
          3    7.4   5.1        7.6    6.1   0.5    2.6  2  Cytochrom_B558a  Cytochrome Cytochrome b558 alpha-subunit


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.9  17.5   3.6e-48   1.1e-44       2     350 ..      37     453 ..      36     457 .. 0.81
   2 ?   -1.1   0.6      0.24   7.1e+02      35      63 ..     469     497 ..     463     503 .. 0.83

  Alignments for each domain:
  == domain 1  score: 152.9 bits;  conditional E-value: 3.6e-48
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlga 99 
                  la++ s l+++i++p+l+ +l e+++ s + i+l +t+y +++a++  ++G+lsd +Grr+v+l++l ++++g + l++  +s+ +ll+lr+lq+lga
  KKY18183.1  37 GLATITSPLTATIYFPLLT-LLREHFHTSTQNINLSMTIYVIFQAISPAIFGPLSDTLGRRPVYLFTLSIYCAGNIGLALNkTSYSALLILRALQSLGA 134
                 6899***************.9*****************************************************444444445555************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeee......... 188
                 +a++++++ ++ad+  +++rgr +g +s++ +lGa +gp++ggl+a  s+++++vf+ l +v+ +++  ++lllpe++++   +   +e          
  KKY18183.1 135 SAAYSISYGVVADICVPSKRGRTMGQMSMALNLGACIGPVVGGLVAyKSGSYEWVFWSLVVVGGVLLAGIALLLPETARNIVGNGAYREAslweeawwk 233
                 **********************************************99******************775567777777777777666666999999888 PP

       MFS_1 189 .................kgtgpaplvp.........awkallkdpvl......w.....illialllfffgfsglltllplylqevlglsglllaglll 250
                                  + ++     p         ++k ++ +++l      +     + l++  +f ++ ++l + +p +  + +g++  l++gl++
  KKY18183.1 234 lgrrwlnekrvhkvqedSDPA-----PeemighrkgILKRFRINNPLaylrmlFyydtaLTLWIHGSFYLVDYSLIAAIPDIYEDIYGFN-ELQIGLAY 326
                 888888777777555443334.....245555888888888888888665554145666344444444447788999999977*******.89***999 PP

       MFS_1 251 allalvgailallagrlsdr.............................lgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfps 320
                    ++++++++ ++g+ +d                               +r  + ll l+ ++l+  g+a++    + ++++++ +l+Gf l +++++
  KKY18183.1 327 LPRGVGIIVGGYCLGKAMDYnycitaknigwkvdrvagddlsnfpieraRSRGSIPLLVLSTAALCGYGWAVAYQV-HFAVAIVIQFLAGFWLTCFYTI 424
                 9999999999***************999887777776666666554444444455555555555555555555555.77777778888*********** PP

       MFS_1 321 llalasdlappeeagtasglfntagslgga 350
                 + +l++d +p +   ta++++++++++ +a
  KKY18183.1 425 YSTLLVDIFP-DSPSTAAAAASIVRCALAA 453
                 *********8.9999999999999996554 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.24
       MFS_1  35 gllltlyalgaavaslplGrlsdrfGrrr 63 
                 g+ +t+ +l ++ +  ++  l+ r+G ++
  KKY18183.1 469 GWYFTALGLSSGTFGALAVLLIRRYGMKW 497
                 78888989989888888888888888665 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   2.3   1.2e-20   3.7e-17      37     208 ..      57     225 ..      31     270 .. 0.87
   2 ?    0.7   3.5      0.06   1.8e+02      96     410 ..     397     464 ..     376     489 .. 0.54

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 1.2e-20
                 SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCC CS
    Sugar_tr  37 sksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkkl 135
                  ++   +s+  + l++ i+++ ++i+  ++g+l+d++GR++++l++  ++++g++  a+ k  +s+ +l++ R l  +g+ +a+ ++   ++ i+ +++
  KKY18183.1  57 LREHFHTSTQNINLSMTIYVIFQAISPAIFGPLSDTLGRRPVYLFTLSIYCAGNIGLALNK--TSYSALLILRALQSLGASAAYSISYGVVADICVPSK 153
                 444455577889999********************************************99..79********************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS---HHHHHHTT-HHHHH CS
    Sugar_tr 136 RgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllill.lflPESPrylvekgkeeeak 208
                 Rg+ ++   +a+ +G  ++ ++g  +++ s+   + + +++ +v   +ll+++ l+lPE+ r  v +g + ea 
  KKY18183.1 154 RGRTMGQMSMALNLGACIGPVVGGLVAYKSG--SYEWVFWSLVVVGGVLLAGIaLLLPETARNIVGNGAYREAS 225
                 ***********************99988888..6888888777776666555549************9999885 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.06
                 TTTT.SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS-- CS
    Sugar_tr  96 akgk.nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPE 193
                 a ++  ++ v iv ++l+G+ +                                                                             
  KKY18183.1 397 AVAYqVHFAVAIVIQFLAGFWLT---------------------------------------------------------------------------- 419
                 33333334444444444444444............................................................................ PP

                 -HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHH CS
    Sugar_tr 194 SPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllv 292
                                                                                                                    
  KKY18183.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

                 HHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHH CS
    Sugar_tr 293 tiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaia 391
                                                                                          ++ ++   l+ ++fp s+ ++a+a +
  KKY18183.1 420 -------------------------------------------------------------------------CFYTIYSTLLVDIFPDSPSTAAAAAS 445
                 .........................................................................44455555666666666666666666 PP

                 HHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 392 vavnwlanflisllfpiit 410
                  +   la    s++ pi++
  KKY18183.1 446 IVRCALAAGGLSIVQPILD 464
                 6655555555555555555 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   2.3     2e-08   5.8e-05      77     214 ..      65     205 ..      53     233 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2e-08
       TRI12  77 sensslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgai.vgctatkfntlla..amtllgvaagpagasplfvgelm..snktkflglli 170
                 ++n +l  t++ + qa+s  ++g l+d +grrp+ + t  +   g i +    t + +ll   a+  lg +a  + +   +v ++   s++ + +g + 
  KKY18183.1  65 TQNINLSMTIYVIFQAISPAIFGPLSDTLGRRPVYLFTLSIYCAGNIgLALNKTSYSALLIlrALQSLGASAAYSISY-GVVADICvpSKRGRTMGQMS 162
                 56788999*************************999998888777763334455577776511555566555554444.45566542256666777665 PP

       TRI12 171 vsipvvvtsglspylgqrlaiq.gswrwifyiyiitsaiavlliv 214
                 +       ++++p +g  +a + gs+ w+f+  +++  + +  i 
  KKY18183.1 163 M--ALNLGACIGPVVGGLVAYKsGSYEWVFWSLVVVGGVLLAGIA 205
                 5..55556678******9997549*******99998876554443 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2    0.0001       0.3      20      65 ..      52      97 ..      45     114 .. 0.81
   2 ?    8.2   1.5   0.00032      0.95     307     382 ..     113     189 ..      98     192 .. 0.81
   3 ?    1.4   2.3     0.039   1.2e+02     301     351 ..     388     442 ..     379     458 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0001
  MFS_1_like 20 PYltiylkskglkaseigiitlilpltsilsppiwgvlaDrfgkrk 65
                P lt+  ++   + ++i + ++i  +++ +sp i+g+l+D +g+r 
  KKY18183.1 52 PLLTLLREHFHTSTQNINLSMTIYVIFQAISPAIFGPLSDTLGRRP 97
                6666666677778899999***********************9874 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00032
  MFS_1_like 307 yaii.enawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllw.dlksaifl 382
                 +a+  ++ + +l++ +L+++   + +++   +v++i  +s +++++g +s++   lG ++G ++GGl+  +  s  ++
  KKY18183.1 113 LALNkTSYSALLILRALQSLGASAAYSISYGVVADICVPSKRGRTMGQMSMA-LNLGACIGPVVGGLVAyKSGSYEWV 189
                 44446778889999*********************************99998.89***********975366555555 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.039
  MFS_1_like 301 ilrfllyaii....enawlvlpievLhgisfgllwaaaveyvskiapksleatgq 351
                 ++ +++y++       + ++++i++L g+ +  ++ +  +   +i+p+s  +   
  KKY18183.1 388 TAALCGYGWAvayqVHFAVAIVIQFLAGFWLTCFYTIYSTLLVDIFPDSPSTAAA 442
                 455666666666667889999**************************98766543 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.9   7.6e-06     0.023      58     168 ..      76     185 ..      59     215 .. 0.84
   2 ?   -3.1   1.0      0.64   1.9e+03     294     331 ..     389     427 ..     373     473 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.6e-06
       MFS_3  58 ifllsi...laGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRs 153
                 +++ +i   + G l+D++ rR v l + ++  ++ + l+    l+ +s ++ll+l  l ++Ga+        +v ++   ++    +   s+ +n+   
  KKY18183.1  76 VIFQAIspaIFGPLSDTLGRRPVYLFTLSIYCAGNIGLA----LNKTSYSALLILRALQSLGASAAYSISYGVVADICVPSKRGRTMGQMSMALNLGAC 170
                 5555553224699************99999999988876....5678999**************99999999*****99999999************** PP

       MFS_3 154 vGPAlgGvlvaavGa 168
                 +GP +gG++    G+
  KKY18183.1 171 IGPVVGGLVAYKSGS 185
                 ********9877775 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.64
       MFS_3 294 lAlvllslalasslwva.vlvlllgGaaWitalstlnva 331
                  Al+    a+a ++  a ++v+ ++ + W+t + t+ ++
  KKY18183.1 389 AALCGYGWAVAYQVHFAvAIVIQFLAGFWLTCFYTIYST 427
                 455556666665554431345556666677665554443 PP

>> Cytochrom_B558a  Cytochrome Cytochrome b558 alpha-subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.4     0.027        80      20      49 ..     173     202 ..     136     226 .. 0.82
   2 ?    6.1   0.5    0.0026       7.6      12      50 ..     449     485 ..     442     501 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.027
  Cytochrom_B558a  20 llaggivavagqfkkwefaayaiaagvfvc 49 
                       ++gg+va      +w f +  ++ gv+++
       KKY18183.1 173 PVVGGLVAYKSGSYEWVFWSLVVVGGVLLA 202
                      4899****9888889***********9975 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0026
  Cytochrom_B558a  12 qalasglillaggivavagqfkkwefaayaiaagvfvcl 50 
                       ala+g + ++  i+ vag+  +w+f+a ++++g f +l
       KKY18183.1 449 CALAAGGLSIVQPILDVAGR--GWYFTALGLSSGTFGAL 485
                      68999999999********5..9***********99654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 3287.62
//
Query:       KKY18184.1  [L=957]
Description: putative kinesin heavy chain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     1e-109  366.5   0.4     1e-109  366.5   0.4    1.9  2  Kinesin      Kinesin motor domain
    3.9e-25   88.5   0.0    1.3e-24   86.8   0.0    1.9  1  Microtub_bd  Microtubule binding
     0.0014   18.5   1.4     0.0014   18.5   1.4    5.8  5  CdvA         CdvA-like coiled-coil domain
  ------ inclusion threshold ------
        2.5    7.4   6.2        1.5    8.1   0.7    2.9  2  SLATT_5      SMODS and SLOG-associating 2TM effector domain f


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  366.5   0.4  2.3e-113    1e-109       1     333 []      19     335 ..      19     335 .. 0.96
   2 ?   -3.8   0.6         1   4.7e+03     142     265 ..     789     810 ..     758     833 .. 0.48

  Alignments for each domain:
  == domain 1  score: 366.5 bits;  conditional E-value: 2.3e-113
                 EE-SSSHHHHTTTTEBCEEEECTCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC..TT CS
     Kinesin   1 RvRplnekekeeeeeeeveveeekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk..ee 97 
                 R+Rp n+ e ++  + +ve +      ++++ + n+ e + +f+Fd+vfd ++ q ++++  +++ v++vl+Gyn+t+faYGqtg+GK+yTm+g+  ++
  KKY18184.1  19 RFRPQNKVELANGGQPIVEFQ------SEDTCSINSVEGSGSFTFDRVFDMASRQGDIFDFSIRSTVDDVLNGYNGTVFAYGQTGAGKSYTMMGDmtDD 111
                 889999999999999999764......77778888899999*****************************************************99989 PP

                 TSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTT CS
     Kinesin  98 eeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekgeknrkvae 196
                 +++Gi+pr++e+lF+ i +  ++   e++v+v y+EiY+e+i+DLL++     + +l ++e++++g vyvkgl e  v s++ev+e++++g+k r va+
  KKY18184.1 112 NSKGITPRIVEQLFSAIYAAPAH--VEYTVRVGYMEIYMERIRDLLNPV----NDNLPVHEEKNRG-VYVKGLIELYVASVDEVYEIMQRGQKARVVAS 203
                 99***************998877..9*********************99....456********98.******************************** PP

                 SSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTSTSCGGGSHHHHHTG CS
     Kinesin 197 tklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaekkkskhipYRdSkLTrlLq 295
                 t++n+eSSRSH++f +t++qk++ ++++   k+++l LvDLAGsE++ ktga +g++l+Ea++iNkSL+aLg vi++L++  ks+hipYRdSkLTr+Lq
  KKY18184.1 204 TNMNQESSRSHSIFVVTITQKDTVTGSQ---KSGTLYLVDLAGSEKVGKTGA-SGQTLEEAKKINKSLSALGMVINSLTDG-KSTHIPYRDSKLTRILQ 297
                 **********************998877...89******************5.7999************************.***************** PP

                 GGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 296 dsLgGnsktlmivtvspssenleetlstlkfaerakei 333
                 +sLgGns+t++i+++spss n +et+stl+f+ rak+i
  KKY18184.1 298 ESLGGNSRTTLIINCSPSSYNDAETVSTLRFGMRAKTI 335
                 ***********************************987 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1
                 TTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEEC CS
     Kinesin 142 LLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekgeknrkvaetklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGs 240
                  L+s++                                                                                             
  KKY18184.1 789 VLRSSN--------------------------------------------------------------------------------------------- 794
                 222222............................................................................................. PP

                 CCHHHHSSTCHHHHHHHHHHHHHHH CS
     Kinesin 241 ErasktgaaegerlkEaaniNkSLl 265
                          +++++k  a   + L 
  KKY18184.1 795 ---------NRQQQKKMAFLERNLE 810
                 .........1222222222222222 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0   2.9e-28   1.3e-24      21     149 .]      13     155 ..      11     155 .. 0.90

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 2.9e-28
                  B-EEEEEEECCCS-T......EEEETTT.........TTTEEEE-SEEEECTTHCCCCCC.CCHHHHHHHHTT--EEEEEEES............... CS
  Microtub_bd  21 niRvfarvrpelesek.....akikfpe......eekkkkkefsFdrvfeseseqeevfe.eisqlvqsaldgynvcifaygqTGsGKtyTmeg...e 103
                  +i v ar rp+++ e        ++f++      +  + + +f+Fdrvf+  s q ++f+  i+  v+ +l+gyn ++faygqTG+GK+yTm+g   +
   KKY18184.1  13 TIKVVARFRPQNKVELanggqPIVEFQSedtcsiNSVEGSGSFTFDRVFDMASRQGDIFDfSIRSTVDDVLNGYNGTVFAYGQTGAGKSYTMMGdmtD 110
                  5999******9999876777734444434578887788999******************8689*******************************9988 PP

                  ....ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd 104 eeeagmipraveeifetiselkekgwkyeielqfveiynekvqDlL 149
                  ++++g +pr+ve++f+ i      + +y++++ ++eiy e+++DlL
   KKY18184.1 111 DNSKGITPRIVEQLFSAIYAA-PAHVEYTVRVGYMEIYMERIRDLL 155
                  8999***************99.79*********************8 PP

>> CdvA  CdvA-like coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3       1.1   5.1e+03      50      65 ..     348     363 ..     331     372 .. 0.51
   2 ?   -0.5   6.9      0.23     1e+03       1      61 [.     455     515 ..     455     521 .. 0.84
   3 ?    1.2   6.7     0.068     3e+02      33      71 ..     517     556 ..     496     578 .. 0.68
   4 !   18.5   1.4   3.1e-07    0.0014      12      75 ..     673     736 ..     668     784 .. 0.90
   5 ?    0.1   0.2      0.15   6.9e+02      22      47 ..     853     878 ..     836     885 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.1
        CdvA  50 keledqikslekalan 65 
                 +el+ q+k+ ++ +++
  KKY18184.1 348 AELKRQLKAAQTQIMT 363
                 3444444444444443 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.23
        CdvA   1 krkkALeeLvsegdipkstyeeikekleealkklkekakelkeklkkrlkeledqikslek 61 
                 kr++ L++ ++e++ +  t+e i  + +e+lk+l+e+   ++   ++ +++l+    +l+k
  KKY18184.1 455 KRENDLQDQLAEKETQVTTAERILAETKEELKTLRENTVRVNRDNEAMTEKLNRAELELQK 515
                 7889999999****************************99988777777777766666665 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.068
        CdvA  33 klkekakel.keklkkrlkeledqikslekalanlkisya 71 
                   + +++++  + lk+  +ele +++s+++ l+++k+s +
  KKY18184.1 517 SFQSREDAItMDSLKEANRELETELDSVKQQLLDVKMSAK 556
                 4444454441478999999999999999999999999865 PP

  == domain 4  score: 18.5 bits;  conditional E-value: 3.1e-07
        CdvA  12 egdipkstyeeikekleealkklkekakelkeklkkrlkeledqikslekalanlkisyasGEi 75 
                 e +++ s++e++kekl +a+++ +++ + l + l+++l+   d++++l +++a+l+ + asG +
  KKY18184.1 673 ERNLNPSDVEDVKEKLAKAYSDRRDTTQSLVDDLRSELTHKTDELSRLRQSVADLQGRQASGGV 736
                 4577889*************************************************99999965 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.15
        CdvA  22 eikekleealkklkekakelkeklkk 47 
                 + +ekl+ a+ + +++ +++ke+l++
  KKY18184.1 853 DSQEKLTAANHRFEAQLSAVKERLEA 878
                 44566666666666666666666653 PP

>> SLATT_5  SMODS and SLOG-associating 2TM effector domain family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.7   0.00034       1.5      82     144 ..     627     683 ..     623     710 .. 0.77
   2 ?    0.4   0.6     0.075   3.3e+02     103     141 ..     764     798 ..     747     829 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00034
     SLATT_5  82 essknykerAekfhkcaleLselynelrllliseedlkekykeiskeYeeiLdkyeNHdeiDy 144
                  +s+++ ++Ae + +   eLsel++  r       +l++k+ +++  Yee+L+++ N +++  
  KKY18184.1 627 LESQGFVRQAELHLNDRGELSELQDTKRI------ELEQKLASVERDYEELLERNLNPSDVED 683
                 57899999***999999*******95555......88888899999*********99776533 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.075
     SLATT_5 103 elynelrllliseedlkekykeiskeYeeiLdkyeNHde 141
                 +l+n+ +++     +l+  ++e  ++Y+++L++++N+++
  KKY18184.1 764 DLQNRCERV----VELEISLDETREQYNNVLRSSNNRQQ 798
                 445555543....34444555666799999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (957 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2157  (0.120308); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.11u 0.31s 00:00:01.42 Elapsed: 00:00:00.53
# Mc/sec: 5426.66
//
Query:       KKY18185.1  [L=151]
Description: putative ubiquitin-conjugating enzyme e2 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-52  176.4   0.1    2.5e-52  176.2   0.1    1.0  1  UQ_con     Ubiquitin-conjugating enzyme
    0.00033   20.3   0.0    0.00038   20.2   0.0    1.1  1  Prok-E2_B  Prokaryotic E2 family B
  ------ inclusion threshold ------
      0.018   15.3   0.0      0.036   14.3   0.0    1.5  1  RWD        RWD domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.2   0.1   4.2e-56   2.5e-52       1     139 [.       8     144 ..       8     145 .. 0.98

  Alignments for each domain:
  == domain 1  score: 176.2 bits;  conditional E-value: 4.2e-56
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT--TTSHHHH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeekWspaltles 99 
                 rl++++k++++++p g+sa+++ d n+++w+++i+gp+dtp+e+g+F+l ++f+e+YP+kpPkvkf++++fHPnv+ +Ge+cldiL+ ++Wsp++++  
  KKY18185.1   8 RLMRDFKRMQTDPPAGVSASPIAD-NVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPKVKFISQMFHPNVYGTGELCLDILQ-NRWSPTYDVAA 104
                 899********************8.**************************************************************.55********* PP

                 HHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
      UQ_con 100 vllsiqsLlaepnpesplnkeaakllkkdreeykkkvkey 139
                 +l+siqsLl++pn++sp+n+ea +l+k++++ey k+v+e+
  KKY18185.1 105 ILTSIQSLLNDPNTSSPANVEASNLYKDNKKEYTKRVRET 144
                 *************************************986 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   6.3e-08   0.00038      34     127 ..      49     132 ..      10     141 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 6.3e-08
   Prok-E2_B  34 sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLClleeeldldewdpngsvadvleqlqqvLn.egisgdedaefagEfqsYwes 127
                 + gt++l + +++++p  pp+v           p +++ +g+LCl       + w p   va++l+++q +Ln  + s+        E++ +++ 
  KKY18185.1  49 EDGTFRLVMQFEEQYPNKPPKVKFISQM---FHPNVYG-TGELCL---DILQNRWSPTYDVAAILTSIQSLLNdPNTSSPA----NVEASNLYKD 132
                 679999****************998777...78999**.******...8999*********************98998888....3344444433 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   6.1e-06     0.036      54      96 ..      52     113 ..      46     150 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.1e-06
                 EEEEEEEE-SSTTSS--EEEEEECC...................SS-HHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxx RF
         RWD  54 slkleiklpeeYPeeaPiislsste...................nlpkeqvksleekleela 96 
                 +++l +++ e+YP+++P++++ s+                    + p ++v+ + + +++l+
  KKY18185.1  52 TFRLVMQFEEQYPNKPPKVKFISQMfhpnvygtgelcldilqnrWSPTYDVAAILTSIQSLL 113
                 68899*****************9998888888888888888888666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.50
# Mc/sec: 908.59
//
Query:       KKY18186.1  [L=383]
Description: putative acetylacetyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-86  289.0   0.1    3.8e-86  288.6   0.1    1.2  1  Thiolase_N     Thiolase, N-terminal domain
    9.3e-13   47.9   1.4    1.6e-12   47.1   0.2    2.0  2  Thiolase_C     Thiolase, C-terminal domain
    8.4e-06   25.5   0.3    1.6e-05   24.6   0.3    1.5  1  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
     0.0042   16.9   0.1        3.1    7.7   0.0    2.5  2  ACP_syn_III    3-Oxoacyl-[acyl-carrier-protein (ACP)] synthas


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.6   0.1   8.6e-90   3.8e-86       2     258 ..      49     305 ..      48     307 .. 0.98

  Alignments for each domain:
  == domain 1  score: 288.6 bits;  conditional E-value: 8.6e-90
                 EEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHH CS
  Thiolase_N   2 vivsaartpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsia 100
                 +i saartp gkf+g++++lsa +L+a a+ka+l+k  v+++++++v+ Gnvlqa+ gq +arqaa+ ag+  +v a+tvnkvc+Sglkav+laaq+i+
  KKY18186.1  49 YILSAARTPTGKFNGAFQSLSAPQLGAVAIKAALDKSHVPASKITDVYYGNVLQAAVGQSPARQAAIFAGLDPTVEAITVNKVCASGLKAVVLAAQNIQ 147
                 699************************************************************************************************ PP

                 TTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTTTBE- CS
  Thiolase_N 101 ageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkdeivP 199
                  g a++ vagG+Esms++p++ + +  +   +gd k++d l++dgl d++n  hmG +aen+akkyk++Re+qd++A++s ++a++a+ a+kF++ei P
  KKY18186.1 148 LGLAEAQVAGGMESMSRVPYYLP-RGTQLPPFGDVKLEDGLLKDGLIDVYNLFHMGNCAENTAKKYKVTREDQDAYAIRSFERAQEAWGAQKFREEIAP 245
                 **********************9.788999********************************************************************* PP

                 EEEEESSSEEEE-S-TTS-TT--HHHHHTS-BSSSTT..SS-BTTSB--BEEEEEEEEEEE CS
  Thiolase_N 200 vkvkgkkgkktvdkdeairsevtaekLaklkpaFkke..GtvtAgnasqisDGaaavllms 258
                 v+vkgkkg+++vd+de+ ++ ++ +k+++lkpaF  +  GtvtA+n+s+ +DGa+a++l +
  KKY18186.1 246 VTVKGKKGDTIVDRDEGYDN-LKRDKVSTLKPAFVRDgtGTVTAANSSTFNDGASAIVLGN 305
                 *****************998.*************999889******************966 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.37   1.7e+03      95     116 ..     117     138 ..      75     161 .. 0.64
   2 !   47.1   0.2   3.6e-16   1.6e-12       2      60 ..     317     375 ..     316     381 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.37
                 HHHHHCTTSEEEEEEEETTTEE CS
  Thiolase_C  95 selkkeggklgvaalCigggqg 116
                   l    + ++v  +C++g ++
  KKY18186.1 117 AGLDPTVEAITVNKVCASGLKA 138
                 3444445555555555554443 PP

  == domain 2  score: 47.1 bits;  conditional E-value: 3.6e-16
                 --SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHH CS
  Thiolase_C   2 kplakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavak 60 
                 ++laki+s a ++ dp ++ ++Pa a++ +l++agl+ edi ++E+nEAFaa++ a+++
  KKY18186.1 317 RVLAKIVSSADAAIDPVDFPVAPAKAVPIALERAGLKKEDIAIWEFNEAFAAVIKANER 375
                 579*************************************************9988876 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.3   3.5e-09   1.6e-05     147     205 ..     102     162 ..      32     169 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3.5e-09
                    HHHSTTHHHHHHHHH..HT--SSEEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE-- CS
  ketoacyl-synt 147 gavlanviagrisya..lglrGpsvtvdtACsSslvavhaavqslrsgeadvalaGGvell 205
                    +a++ +  a + +++  l+ +  ++tv   C+S+l+av +a q+++ g a++ +aGG+e +
     KKY18186.1 102 QAAVGQSPARQAAIFagLDPTVEAITVNKVCASGLKAVVLAAQNIQLGLAEAQVAGGMESM 162
                    5455555555566662233345689999******************************977 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0007       3.1       3      40 ..     128     165 ..     126     181 .. 0.83
   2 !    6.8   0.1    0.0014       6.1      49      65 ..     291     307 ..     281     322 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0007
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGC CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetlski 40 
                  +n++C++ + a+ +A++ i+ g a+  +  g e +s++
   KKY18186.1 128 VNKVCASGLKAVVLAAQNIQLGLAEAQVAGGMESMSRV 165
                  799*******************9999988888999986 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0014
                  HTTB-EEEEEEEEEEES CS
  ACP_syn_III  49 avlfGDGAgAvvlease 65 
                  + +f DGA A+vl+++e
   KKY18186.1 291 SSTFNDGASAIVLGNKE 307
                  568**********9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2631.15
//
Query:       KKY18187.1  [L=409]
Description: putative ubid family decarboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3021.89
//
Query:       KKY18188.1  [L=603]
Description: putative bleomycin hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.6e-155  517.5   0.1   3.3e-155  517.2   0.1    1.0  1  Peptidase_C1_2  Peptidase C1-like family
      3e-08   34.0   0.3     0.0011   19.1   0.2    2.4  2  Peptidase_C1    Papain family cysteine protease
  ------ inclusion threshold ------
       0.37   10.2   1.9        2.1    7.7   0.1    2.2  2  SEO_C           Sieve element occlusion C-terminus


Domain annotation for each model (and alignments):
>> Peptidase_C1_2  Peptidase C1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  517.2   0.1  5.5e-159  3.3e-155      34     438 .]     185     600 ..     160     600 .. 0.94

  Alignments for each domain:
  == domain 1  score: 517.2 bits;  conditional E-value: 5.5e-159
                     HHHB-HHHHHH-----SEE-SS-..S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHH CS
  Peptidase_C1_2  34 eallnkkvkkelervFstevetd..evtnqkqsGRCWlFaalnvlRlkllkklklkefelsqaylffwDklEkanyFleniietadepldsRlvk 126
                      ++ +k+++ +++++F+++++ +  ++tnq++sGRCWlFa++nv+R++++kk++l++felsqaylffwDklEk+nyFle+i++t+de+ldsRlv+
      KKY18188.1 185 AIIGQKSATLSDTQTFNVKIPFEgaPITNQRSSGRCWLFASTNVFRVAIMKKHNLESFELSQAYLFFWDKLEKSNYFLEQILDTVDEDLDSRLVQ 279
                     3445667778999*******99999********************************************************************** PP

                     HHHH-TT-S-B-HHHHHHHHHHH---BGGGS-S-CHHHBHHHHHHHHHHHHHHHHHHHHHHHHT.TTTCHHHHHHHHHHHHHHHHHHHHHC---S CS
  Peptidase_C1_2 127 fllatpqqDGGqwdmlvslvekyGvvPkkvypesfnseasrelnelLnkklrkdaleLRklvee.gkdkeeieakkeelleeifrllaialgePp 220
                      ll++p +DGGqwdm+++lv kyG+vP+++yp+s+n+++s+ + +l+++klr++al+LR+++++ + ++++++a+ke++++e++ +l+++lg Pp
      KKY18188.1 280 ELLSAPVNDGGQWDMVANLVAKYGLVPQTLYPDSYNASNSSVMGRLITTKLREFALILRSMASKkNMTRASVHATKEKMMQEVHLILTLMLGPPP 374
                     ***********************************************************887651667899*********************999 PP

                     ...SSEEEEEE-TTS-EEEEEEE-HHHHHHHCTT.........S-CCCEEEEE--T-TTS-TTEEEEETT--SSTT---EEEEE--HHHHHHHHH CS
  Peptidase_C1_2 221 ...ktFdfeyrdkdknyhkekdltpkeFyekyvk.........ldledkvslinaPtadkpynklytvellgnvvggrkvlylnvevevlkklvi 303
                        k+F +ey+dk+ +yhk+++ +p++F ++             d++   sl+n+P  ++pyn  +tv  lgnv ggr+v+y+nv++ v+k+++i
      KKY18188.1 375 npnKEFAWEYYDKNGKYHKVNK-SPLSFSRELSSpstirslsgSDVNSLFSLVNDP--RNPYNTHLTVSRLGNVYGGRPVTYVNVSMPVMKQAAI 466
                     8889****************99.9999998865444444444589***********..9************************************ PP

                     HHHHTT--EEEEE-TTTTEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTS----EEEEEEEEEE-TTSSEEEEEEE-SBTTTSTBTTEEEEE CS
  Peptidase_C1_2 304 aqlkdgeavwFGsdvgkemdrktGlldldlykleelldvdlklskAerldygeslmtHamvltgvdvdddgkvtkwkvEnsWGedsGekGyfvms 398
                     + l+ g  v+FGsdvgk +d+++G++d+ +++++ +++vdl++sk +rl++ges+mtHamvlt+v+v +dgk  +w+v nsWGe +GekG+fvm+
      KKY18188.1 467 RMLQGGLPVFFGSDVGKYSDSSSGIMDTAIFDYSLAFNVDLNMSKSQRLKTGESAMTHAMVLTAVQV-EDGKSVRWRVQNSWGEAAGEKGWFVMT 560
                     *******************************************************************.99************************* PP

                     HHHHHHHEEEEEEEGGGS-HHHHHHHHS--EEE-TTSCCC CS
  Peptidase_C1_2 399 dewfdeyvyevvvdkkylpeellealeeepivLeaWDplg 438
                     d+w+de++y+vvvd  ++++e+ ++l++ep+vL+ WDp+g
      KKY18188.1 561 DKWMDEFCYQVVVDPGFVSQEIRDVLDQEPTVLPLWDPMG 600
                     ***************************************8 PP

>> Peptidase_C1  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0     2e-05      0.12      15      55 ..     209     249 ..     198     258 .. 0.91
   2 !   19.1   0.2   1.9e-07    0.0011     159     202 ..     517     561 ..     492     570 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2e-05
                   G---B-TSSBTHHHHHHHHHHHHHHHHHHSSS---B-HHHH CS
  Peptidase_C1  15 tpvkdqgsCGsCWafsavgaledrlaiktkkklvslSeqel 55 
                    p+ +q s G CW f++++++  +++ k++ ++++lS+  l
    KKY18188.1 209 APITNQRSSGRCWLFASTNVFRVAIMKKHNLESFELSQAYL 249
                   5899*************************99999**98765 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 1.9e-07
                   CETSS-EEEEEEEEEEEETTEEE.EEEE-SBTTTSTBTTEEEEES CS
  Peptidase_C1 159 csktelnhavlivGygvengkky.WivkNsWgtdwgekGYiriar 202
                     +++++ha+++    ve+gk   W v+NsWg+  gekG++ +  
    KKY18188.1 517 TGESAMTHAMVLTAVQVEDGKSVrWRVQNSWGEAAGEKGWFVMTD 561
                   444678999999999999966544*****************9975 PP

>> SEO_C  Sieve element occlusion C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1   0.00036       2.1      86     147 ..     235     296 ..     226     302 .. 0.78
   2 ?    1.4   0.2     0.031   1.8e+02      98     135 ..     328     367 ..     315     370 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00036
       SEO_C  86 eeeklshvlkdltkiwfFWtRleSmlrsklqlgktaendkilqevvklLsydgsdeg.Wavls 147
                 ++ +l  +++  ++  fFW +le   +   q+  t+++d   + v++lLs   +d+g W +++
  KKY18188.1 235 KKHNLE-SFELSQAYLFFWDKLEKSNYFLEQILDTVDEDLDSRLVQELLSAPVNDGGqWDMVA 296
                 444443.343456778**********************************9877554388775 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.031
       SEO_C  98 tkiwfFWtRleSmlrskl..qlgktaendkilqevvklLs 135
                 tk++ F + l Sm   k   + + +a ++k++qev  +L+
  KKY18188.1 328 TKLREFALILRSMASKKNmtRASVHATKEKMMQEVHLILT 367
                 55666777899999888623444677889******99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 3876.18
//
Query:       KKY18189.1  [L=858]
Description: hypothetical protein UCRPC4_g05074 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-18   65.7   0.8    5.2e-18   64.9   0.8    1.4  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.8   2.9e-22   5.2e-18       1      63 []       9      72 ..       9      72 .. 0.99

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 2.9e-22
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHH.HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdp.eaeekFkeineAyevLsdpekRkqYD 63
                dyY+ L+++  as+de+kk++r+la+ yHPD+np+ + +   kF+ i++A evL+dpe++ +YD
  KKY18189.1  9 DYYADLELPYGASADEVKKQFRRLAKIYHPDRNPGREvDFISKFQAIQAANEVLTDPEQKLKYD 72
                89**********************************99*************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (858 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.48
# Mc/sec: 5419.59
//
Query:       KKY18190.1  [L=430]
Description: putative histidinol-phosphate aminotransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-65  220.5   0.0    4.4e-65  220.2   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
     0.0025   16.4   0.1     0.0083   14.7   0.0    1.7  2  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
  ------ inclusion threshold ------
       0.23   10.3   0.0       0.33    9.8   0.0    1.2  1  Alliinase_C      Allinase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.2   0.0   7.3e-69   4.4e-65       4     362 ..      37     398 ..      35     399 .. 0.93

  Alignments for each domain:
  == domain 1  score: 220.2 bits;  conditional E-value: 7.3e-69
                    EESSSSSTTSTTSSHHHHHHHHHHHH.HHHHHTSTTST-BTTHHHHHHHHHHHHHC..TCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EE CS
  Aminotran_1_2   4 inLgsneylgdsgkptlpevakaeke.galaggtlneygpidglpeleealakflg..rseklklkreaavvvgsGagaliealifllklnpgdei 96 
                    i L +ne+ ++ g    ++ a a+      ++ +ln+y++++ + el++  + + +  ++ +++l++e ++ vg G++++i+al ++++++ +d+i
     KKY18190.1  37 ILLDANENAYGPGLALNEHGALANSSkPEIDFLGLNRYPDPH-QIELKQLFCNLRStkTHTQKTLQPE-NLFVGVGSDEAIDALLRCFCVPGKDKI 130
                    5677888888877777777777776667889999********.*************98899*******.*************************** PP

                    EEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTT CS
  Aminotran_1_2  97 lvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYag 192
                    l + pty++y+  +  +++e+v +pl++e +f+l  ea+ e l+ ++     +k+++++sp NPtG+v+++++++k+l++ ++ n +++vDeaY +
     KKY18190.1 131 LTCPPTYGMYSVSADVNDVEIVHVPLDPERGFSLRPEAINERLSADS----TIKMVYICSPGNPTGKVIDKADIQKVLEHPTW-NGIVVVDEAYID 221
                    ********************************************965....68*****************************9.9*********** PP

                    CBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 193 fvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrrkel 288
                    f+ + +   ++  +v e pnl++ ++lsKafGlaG+R+G ++ ++++++ l++l++p+++ss+++a+++aals ++l    ++e +++++++r++l
     KKY18190.1 222 FAPDGS---SLAEWVTEWPNLVVIQTLSKAFGLAGIRLGVAFTSPEIARLLNSLKAPYNISSPTSALASAALSSTNLA--VMKEKKDKIISQRDRL 312
                    ***977...5589***************************************************************97..9*************** PP

                    HHHHHHS...TEEEECCSCSSEEEEEETHH..........CHHHHHHHHHHTCTEEE.EEGGGGTSTTEEEEECTTS-HHHHHHHHHH CS
  Aminotran_1_2 289 rdeLael...glkvlasqsgmflltdlsae..........takelskkLleevgvyv.tpgtsftvpgrlRitvAglteeeleelvea 362
                    +++L ++   g    + +s+++l+  l++           +a +++++L+e++gv+v ++g++ +++g+lRitv  +te e+++++  
     KKY18190.1 313 VEKLPKIagiGRFLGGFESNFLLVEILDKPreeggkpsnpAALAVYESLAEHKGVVVrFRGKELGCEGCLRITV--GTEREVDRFLGE 398
                    ********5555556677**********999*********************7776637***************..*******99865 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.4e-06    0.0083     135     175 ..     176     218 ..     114     221 .. 0.79
   2 ?   -1.5   0.0      0.11   6.8e+02     340     372 ..     361     393 ..     353     395 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-06
                      CTTEEEEEEESS-TTTT----HHHHHHHHHHTT..-EEEEEGT CS
  Cys_Met_Meta_PP 135 kentklvylEtptnpllkvvDiekiaklakkag..vlvvvDnt 175
                      ++  k+vy+ +p+np+ kv+D ++i k+  +     +vvvD +
       KKY18190.1 176 DSTIKMVYICSPGNPTGKVIDKADIQKVLEHPTwnGIVVVDEA 218
                      4478****************99999999877655578899976 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.11
                      TTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHH CS
  Cys_Met_Meta_PP 340 smthasipkeereaagvtddliRlsvGiEdvdD 372
                        +h+ +  + r +   +++ +R+ vG E   D
       KKY18190.1 361 LAEHKGVVVRFRGKELGCEGCLRITVGTEREVD 393
                      56677777777777777899*********8765 PP

>> Alliinase_C  Allinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   5.5e-05      0.33      71     208 ..     107     261 ..      97     303 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 5.5e-05
                  EECHHHHHHHHHHHHHHHH..SSSSSEEEEE-SS--THHHHHTTTT-BTTEEEEEEST.T-........--S..S-EEEEE..ESS-TTT----.... CS
  Alliinase_C  71 vGtGstqLlqalvyalspeasseskpvkvvaavPyysvykeqtslldsklykweGdaa.ayv.......kkknpeefielv..tsPnnPdgllr.... 154
                  vG+Gs + ++al+ ++         + k+++  P y +y   +++ d +  +   d +  +        ++ ++++ i +v   sP nP g++     
   KKY18190.1 107 VGVGSDEAIDALLRCFCVP-----GKDKILTCPPTYGMYSVSADVNDVEIVHVPLDPErGFSlrpeainERLSADSTIKMVyiCSPGNPTGKVIdkad 199
                  5556655555555555544.....445666666666666666666665555544443213333344443445566778876447*******8742122 PP

                  .----..-TT-EEEEEE-TT..-STTTS---S-B--...SEEEEEHHHHHS-GGG-EEEEEE CS
  Alliinase_C 155 .eavv..kgseakviyDlay..YWPhytpitskade...dimLftlskltGhaGsrlGWalv 208
                   ++v+   + +++v++D ay  + P+ + + + + e    +++ tlsk  G aG+rlG a+ 
   KKY18190.1 200 iQKVLehPTWNGIVVVDEAYidFAPDGSSLAEWVTEwpnLVVIQTLSKAFGLAGIRLGVAFT 261
                  2346654456899****999667899888877666533157889**************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2664.95
//
Query:       KKY18191.1  [L=217]
Description: putative c2h2 finger domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-08   34.8   0.7    2.5e-08   34.0   0.7    1.5  1  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
    5.4e-08   33.0   0.8    9.7e-08   32.2   0.8    1.4  1  zf-met       Zinc-finger of C2H2 type
     0.0012   18.9   0.4     0.0027   17.8   0.4    1.5  1  zf-DBF       DBF zinc finger
  ------ inclusion threshold ------
        2.7    8.4   6.7       0.33   11.4   1.1    1.9  2  Dsh_C        Segment polarity protein dishevelled (Dsh) C ter


Domain annotation for each model (and alignments):
>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.7   5.6e-12   2.5e-08       2      26 ..     103     127 ..     102     128 .. 0.97

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 5.6e-12
                  CBBTTTTBBBSSHHHHHCCTTSHHH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkSKkH 26 
                  fYC++Cd ++k+  ++ +Hl+SK+H
   KKY18191.1 103 FYCEACDLTYKDNVQYIEHLNSKQH 127
                  9************************ PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.8   2.2e-11   9.7e-08       1      25 []     103     127 ..     103     127 .. 0.99

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 2.2e-11
      zf-met   1 fyCelCnvtfnsesqlksHlqGKkH 25 
                 fyCe+C+ t+++ +q++ Hl++K+H
  KKY18191.1 103 FYCEACDLTYKDNVQYIEHLNSKQH 127
                 8************************ PP

>> zf-DBF  DBF zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.4   5.9e-07    0.0027       4      26 ..     103     128 ..     101     129 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 5.9e-07
      zf-DBF   4 GYCEnCrvkfed...leeHlksekHr 26 
                  YCE C+ +++d   + eHl+s++H 
  KKY18191.1 103 FYCEACDLTYKDnvqYIEHLNSKQHL 128
                 6*********9744355********5 PP

>> Dsh_C  Segment polarity protein dishevelled (Dsh) C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.1   7.3e-05      0.33      96     154 ..       4      62 ..       1      95 [. 0.64
   2 ?   -0.0   0.4      0.22   9.9e+02     107     121 ..     180     194 ..     148     212 .. 0.44

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.3e-05
       Dsh_C  96 ekerkaggsgsesesstrssvsrrerekaqserssaaaserskrssklrsks.slsshae 154
                 +k+++a gsg+ s++s r++  r+e  + + +++s++a e+sk++ + +    + ++h +
  KKY18191.1   4 DKKKSAYGSGAASDTSFRKTWDREE-YARKAKEESETAKEESKARYEAKLAGkKYHKHVD 62 
                 5666777************985554.4444555566667777777443332235555553 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.22
       Dsh_C 107 esesstrssvsrrer 121
                 e e  +r++ +r+++
  KKY18191.1 180 EEEAREREEKRRKRN 194
                 122122222111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1674  (0.0933683); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 1425.04
//
Query:       KKY18192.1  [L=705]
Description: putative chromosome segregation protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-46  154.5   5.0    7.8e-23   80.9   0.0    2.5  2  BIR       Inhibitor of Apoptosis domain


Domain annotation for each model (and alignments):
>> BIR  Inhibitor of Apoptosis domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.0   4.4e-27   7.8e-23       1      72 [.      13      98 ..      13      99 .. 0.88
   2 !   73.0   3.2   1.3e-24   2.3e-20       1      72 [.     120     192 ..     120     193 .. 0.94

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 4.4e-27
         BIR  1 RlatFkkn..................WpeskkeakpsaeeLaeaGFyytptseskdnvqCfyCklaldgweedDdpleeHkkhspkCefl 72
                Rl++F+                    Wp+++    ps++eLa+aGFyy+p+ +s+dn+ Cf+C+++ldgwee+Ddp+ eH+khs +C+++
  KKY18192.1 13 RLESFTVSipgskrrnsitkgikagsWPHKS----PSPTELANAGFYYKPSPTSPDNTICFMCERKLDGWEEEDDPIVEHLKHSGNCAWA 98
                77777444777777778888888888**765....9999*************************************************97 PP

  == domain 2  score: 73.0 bits;  conditional E-value: 1.3e-24
         BIR   1 RlatFkknWpeskkeakpsa.eeLaeaGFyytptseskdnvqCfyCklaldgweedDdpleeHkkhspkCefl 72 
                 R +tF+ +Wp++ k+ ++++ e++++aG+ y+pt es+d v+C  Ckl+ldgwe++D+p++eH+++sp+C+f+
  KKY18192.1 120 RRETFEGKWPHEGKRGWVCKvEKMVTAGWHYAPTPESDDFVTCADCKLCLDGWEPKDNPFDEHYRRSPDCRFF 192
                 899**99***9999998655399************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1414  (0.0788666); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.08u 0.35s 00:00:01.43 Elapsed: 00:00:00.51
# Mc/sec: 4138.83
//
Query:       KKY18193.1  [L=508]
Description: putative mmp37-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.5e-129  431.4   0.0     4e-129  430.7   0.0    1.3  1  Tam41_Mmp37  Phosphatidate cytidylyltransferase, mitochondria


Domain annotation for each model (and alignments):
>> Tam41_Mmp37  Phosphatidate cytidylyltransferase, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  430.7   0.0  2.2e-133    4e-129       1     323 []     112     479 ..     112     479 .. 0.98

  Alignments for each domain:
  == domain 1  score: 430.7 bits;  conditional E-value: 2.2e-133
  Tam41_Mmp37   1 lekilkkfpapiryafaYGSgvfkqkgy.................kkkkkkkkmiDlifavsdpeewHslNlkqnpsHYsllrrlgskliskvqeklg 81 
                  l+++l+kf+apiryafaYGSgvf+q g+                 k+++  +kmiD+if+vs++++wHslNl+q+++HYs+l ++gs ++skvq+++g
   KKY18193.1 112 LRQVLWKFRAPIRYAFAYGSGVFSQGGSiasagpnihpsapeavqKWQRGGQKMIDFIFGVSYTQHWHSLNLNQHRDHYSALGSMGSYVVSKVQDSWG 209
                  799*****************************************99**************************************************** PP

  Tam41_Mmp37  82 agvyfnplvevngkliKYGVvsledllkDLleWdtLYlaGRlqKPvkilrddarirlanqvNlksAlraaLlllpekfteeeLyetiasLSYlGDlRm 179
                  agvyfnp+v+vng+liKYGVv+l++l++DL++WdtLYlaGRlqKPvkilrd++++rlanqvNl sA+r+aLlll  +fte++Ly+tia++SYlGD+Rm
   KKY18193.1 210 AGVYFNPYVTVNGTLIKYGVVNLDTLCRDLSTWDTLYLAGRLQKPVKILRDNPSVRLANQVNLLSAVRTALLLLGPDFTEQQLYSTIAGISYLGDPRM 307
                  ************************************************************************************************** PP

  Tam41_Mmp37 180 klggEnknKvkniVekqleefrelYkplleelenvellekekekeee.......kkleqdlspearaellrkLPkklrskllskyekkl......... 261
                   +++E+++Kv+niV++ql++fr+lY+pl+e+l+nv++++ ++++++         kl qd++p +r +++r+LPk++r+kl+++y++k+         
   KKY18193.1 308 FVNAEDPKKVANIVNGQLANFRRLYAPLIENLPNVSFNDPRCSNHDWfsdestnAKLAQDMDPVKRGNMVRRLPKAFRQKLYHEYQSKFniprgefdk 405
                  ***************************************9997765589999889999**************************************** PP

  Tam41_Mmp37 262 ...........skkkkdeeeflkkiakdee.laeevkkaikkivaksslkqslkgvltaGvvksvkYaleKlkk 323
                             + k++++++f+++ia+d++ +++ev ++i+k+++++s++qs+k+++taG+++ ++Ya+eK+ k
   KKY18193.1 406 mlenaqdedatRIKRREGGAFEQRIARDTDgIQKEVGDVIRKTIWWPSTSQSIKSLFTAGLSRGWRYASEKRAK 479
                  *********9988999*************66****************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1368  (0.076301); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 3241.25
//
Query:       KKY18194.1  [L=651]
Description: putative dead box rna helicase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-47  159.8   0.0    9.2e-47  159.1   0.0    1.3  1  DEAD        DEAD/DEAH box helicase
    1.2e-20   73.9   0.1    1.8e-19   70.1   0.0    2.8  3  Helicase_C  Helicase conserved C-terminal domain
    7.4e-07   29.3   0.0    1.2e-06   28.6   0.0    1.3  1  ResIII      Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
        0.1   11.8   0.0       0.21   10.8   0.0    1.5  1  SecA_DEAD   SecA DEAD-like domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.1   0.0     2e-50   9.2e-47       1     173 [.     104     285 ..     104     288 .. 0.91

  Alignments for each domain:
  == domain 1  score: 159.1 bits;  conditional E-value: 2e-50
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS.........TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet.........kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardq 90 
                 td+Q+ +i+++l+g dv+++a+TG+GKTlafl+pv+q+++++         +     +ali++PtreLaeq++++++k+ + +d+rv+  +gg+ +r+ 
  KKY18194.1 104 TDVQRLTINETLDGTDVIAQAKTGTGKTLAFLMPVIQHILKDkrlgrrshgRAPVDIRALIISPTRELAEQIATEARKVVSSTDIRVQTAVGGTGKREA 202
                 79*************************************99988888777767777******************************************* PP

                 HHHHH.TTCSEEEEEHHHHHHHHHCTS..SHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHH CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  91 lskld.ngvdivvgtpgrlddllstgk..lnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdv 173
                 l++l+ +g+++++gtpgr++dl+s+++  ++l++++++VlDEadrlld gf ++i+ri + +p+ ++    +rq++++SAT+p++v
  KKY18194.1 203 LQRLKrEGCHLLIGTPGRVQDLISDEYsgVDLRHIETFVLDEADRLLDIGFAPDIERIQSFMPNREE---RDRQTLMFSATVPREV 285
                 ****8455***************65553478***************************999975544...5678*********776 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.59   2.7e+03      18      71 ..     161     215 ..     153     241 .. 0.60
   2 ?   -1.2   0.0      0.57   2.6e+03       6      29 ..     260     285 ..     256     314 .. 0.68
   3 !   70.1   0.0     4e-23   1.8e-19      39     111 .]     386     463 ..     341     463 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.59
                 EEEEEESSHHHHHH....HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEE CS
  Helicase_C  18 kilifvntidrlek....vklllekkgikvavlhgelpqnereeileqfnkgesdvLi 71 
                 ++li+++t++ +e+    ++ + ++ +i+v +  g + ++   e+l++ +++ +++Li
  KKY18194.1 161 RALIISPTRELAEQiateARKVVSSTDIRVQTAVGGTGKR---EALQRLKREGCHLLI 215
                 5677777777665333332222222356665555544444...444444444445555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.57
                 HHHHH.HHTTTTSEEEEEESSHH.HH CS
  Helicase_C   6 llell.kleeeggkilifvntid.rl 29 
                 +  ++ ++ee+++++l+f+ t+  ++
  KKY18194.1 260 IQSFMpNREERDRQTLMFSATVPrEV 285
                 5555567899999*****99987433 PP

  == domain 3  score: 70.1 bits;  conditional E-value: 4e-23
                 T.....TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  39 k.....gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRag 111
                 +       +++ +h++l+q +r +  + f+  +s +L ++dv +rG+d+p+v++Vi+++lprn ++yi+r GRtgRag
  KKY18194.1 386 FahplaPARIIEIHSRLTQAQRTRNAAMFKTSKSAILFSSDVTARGMDFPDVSHVIQLGLPRNDDDYIHRLGRTGRAG 463
                 23344468999*****************************************************************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   2.7e-10   1.2e-06      24     170 ..     117     282 ..      88     283 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 2.7e-10
                 TSEEEEEESTTSTHHHHH.HHHHHHH-S................-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.........-SEEE CS
      ResIII  24 dkrglikmaTGtGKTlva.aklierllkkgkee...........kflflvprkslleqtleefkkflseaykeigkkvsgdkkka..kekdstnkkilv 108
                  + ++ ++ TGtGKTl   + +i+++lk ++             ++l++ p+++l eq  +e +k+ s+++ ++++ v g +k++  ++ +++ +++l+
  KKY18194.1 117 GTDVIAQAKTGTGKTLAFlMPVIQHILKDKRLGrrshgrapvdiRALIISPTRELAEQIATEARKVVSSTDIRVQTAVGGTGKREalQRLKREGCHLLI 215
                 4578999*********99899999999976655899**********************************998999999999999899999******** PP

                 EEHHHHHHTH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.....SEEEEEESS-S CS
      ResIII 109 ttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak...kswreilekfke.....avllglTATpe 170
                  t  +++  +   + e    +  +++ ++ DEa rl +      +++i   +++        l ++AT +
  KKY18194.1 216 GTPGRVQDLI---SDEYSGVDLRHIETFVLDEADRLLDIgfaPDIERIQSFMPNreerdRQTLMFSATVP 282
                 ********99...8889999999999*********99964433666663333224445588899999976 PP

>> SecA_DEAD  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.7e-05      0.21      76     119 ..     101     146 ..      44     149 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.7e-05
                 xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD  76 mrhydvQliGglvlheg..kiaemkTGEGKtlvatlpaylnaltgk 119
                 ++  dvQ +      +g   ia+ kTG GKtl+  +p++ + l++k
  KKY18194.1 101 TTMTDVQRLTINETLDGtdVIAQAKTGTGKTLAFLMPVIQHILKDK 146
                 555566654444444441169******************9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4453.67
//
Query:       KKY18195.1  [L=305]
Description: putative class ii aldolase adducin domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-42  145.1   0.3    2.8e-42  144.8   0.3    1.1  1  Aldolase_II  Class II Aldolase and Adducin N-terminal domain


Domain annotation for each model (and alignments):
>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.8   0.3   1.6e-46   2.8e-42       2     186 .]      63     247 ..      62     247 .. 0.90

  Alignments for each domain:
  == domain 1  score: 144.8 bits;  conditional E-value: 1.6e-46
                  HHHHHHHHHHHTTSSCTTBCEEEEEET.STTEEEEEBTSS-GGGHTGGGEEEEETTSCEEEEC..ECSSSTB-.TTHHHHHHHHHH-TT-SEEEEE-- CS
  Aldolase_II   2 elaeasrllarrglvegtgGniSvrvp.eedsflitpsgvdfeeltaedlvvvdldsgevveg..kekggkps.setplHlaiykarpdaravvHtHs 95 
                  +l  a r+++++g++eg++G+i++r+p ++++f+++ +g++f  +  ++l+ v+ + g+v+ g  + kgg  + +++ +H+ai++arpd+ + +H+Hs
   KKY18195.1  63 RLTLALRIFGKHGFDEGVAGHITIRDPvDPTTFWVNEFGIPFTMIHSSNLIHVNHH-GKVIGGgrEGKGGLLNhAAFMIHSAIHAARPDVLCAAHSHS 159
                  678899*******************9899*************************77.****6688556666788************************ PP

                  HHHHHHHTCCSTSCHCCSSHHHHC.HSSSEEEEES-SSTTCHHH...HHHHHHHHHHS-SEEEETTTEEEEEESSHHHHHHHHHHHHHHHHHHH CS
  Aldolase_II  96 paavalsalagkeglppltqeaaklllgdevpvipyaapgteel...gealaealkedakavllrnHGlltvGetleeAvalaetleeaaeiql 186
                  +++ ++++l  +++++ +tq++++++ +d  +v++ ++ g +++   g+++a+al+ ++ka+ll+nHGlltvG+t+e Av+ + +le ++++ql
   KKY18195.1 160 KYGRTFTTL--GREIDITTQDSCMFW-ND-HAVYKQFK-GIVLAeeeGQNIAKALG-SKKAALLQNHGLLTVGDTVEGAVYGFLALEGCCQTQL 247
                  *******66..677**********87.55.56667888.766667779*******8.889********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2110.05
//
Query:       KKY18196.1  [L=526]
Description: putative nuclear segregation protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.021   15.1   1.9      0.021   15.1   1.9    7.0  7  ABC_tran_CTD    ABC transporter C-terminal domain
      0.078   12.8   2.6      0.094   12.5   0.1    2.4  3  DASH_Duo1       DASH complex subunit Duo1
      0.089   12.4   0.1       0.15   11.7   0.1    1.3  1  DUF585          Protein of unknown function (DUF585)
          1    7.5  38.0     0.0066   14.7  20.2    2.8  3  EzrA            Septation ring formation regulator, EzrA
        6.5    7.1   9.2        2.7    8.3   0.3    3.6  3  Osmo_CC         Osmosensory transporter coiled coil


Domain annotation for each model (and alignments):
>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.58   2.1e+03      14      51 ..      23      59 ..      15      65 .. 0.72
   2 ?    0.9   3.7      0.16   5.6e+02      19      62 ..      76     114 ..      69     119 .. 0.58
   3 ?    6.9   0.8    0.0021       7.4       8      46 ..     126     162 ..     125     169 .. 0.70
   4 ?   15.1   1.9   5.7e-06     0.021      10      62 ..     172     224 ..     164     231 .. 0.88
   5 ?   -2.4   1.9       1.7   6.1e+03       7      31 ..     258     282 ..     254     303 .. 0.45
   6 ?    0.2   1.1      0.25   9.1e+02       5      16 ..     442     453 ..     433     461 .. 0.67
   7 ?   -2.9   1.2       2.4   8.7e+03      34      53 ..     499     518 ..     496     523 .. 0.55

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.58
  ABC_tran_CTD 14 eaeIeaLEeeiaeleaeladpelysdpeklaelsaele 51
                   a++ a E+  a ++a++  +e+ +d+   +e+ a+l+
    KKY18196.1 23 KADLSAAEKAHAIVQAKFTCEEV-ADQGSKNEIRAKLD 59
                  56778888888999998888886.45555566666555 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.16
  ABC_tran_CTD  19 aLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeelye 62 
                   aL +e+ae+ ++ + +      +  a  +++l +l+a+L+ + +
    KKY18196.1  76 ALRAELAEIRQKQSGNK-----NSRASQQERLSQLDAQLKSKIA 114
                   34444444444444333.....4456667778888888877765 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0021
  ABC_tran_CTD   8 releeleaeIeaLEeeiaeleaeladpelysdpeklael 46 
                   + +ee+++eI +LE++ ++ + ++ d+  +   ++++el
    KKY18196.1 126 KNIEEIDREISRLEKQVESGTMKIVDEKKT--LNQVTEL 162
                   568999999999999999988888888733..3444443 PP

  == domain 4  score: 15.1 bits;  conditional E-value: 5.7e-06
  ABC_tran_CTD  10 leeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeelye 62 
                   +e   + I++  ++i+el +++ +pe  + +++ + +++el+e++++ +  y 
    KKY18196.1 172 FEDAQKSIDKTKADISELKKAMDNPEAKALSDRYNTIQNELNEIKSDQDDVYK 224
                   5677899*******************766669*************99998875 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 1.7
  ABC_tran_CTD   7 qreleeleaeIeaLEeeiaeleael 31 
                   +r ++e e++  +   e ++ e   
    KKY18196.1 258 RRAYKEYEDKVYQARRERQKAERDA 282
                   5555555555555444444444422 PP

  == domain 6  score: 0.2 bits;  conditional E-value: 0.25
  ABC_tran_CTD   5 keqreleeleae 16 
                   k qre+++le+e
    KKY18196.1 442 KAQREIDRLEKE 453
                   455666655553 PP

  == domain 7  score: -2.9 bits;  conditional E-value: 2.4
  ABC_tran_CTD  34 pelysdpeklaelsaeleel 53 
                   +el +  ++ a++ +el+++
    KKY18196.1 499 AELAQENDAAADVAEELKAA 518
                   33334445666666666655 PP

>> DASH_Duo1  DASH complex subunit Duo1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       3.4   1.2e+04      22      39 ..     127     144 ..     126     145 .. 0.68
   2 ?   12.5   0.1   2.6e-05     0.094       5      55 ..     161     213 ..     158     217 .. 0.90
   3 ?   -2.4   0.1       1.2   4.1e+03      14      31 ..     416     433 ..     413     445 .. 0.64

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3.4
   DASH_Duo1  22 sLkkaksniervketves 39 
                 +++++  +i+r++++ves
  KKY18196.1 127 NIEEIDREISRLEKQVES 144
                 566677777777777765 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 2.6e-05
   DASH_Duo1   5 EleqLrkinevienviesLkkaksniervketves..tntLLdkWirIlsqte 55 
                 El++L+k    +e+ ++s++k+k +i+++k+++++  +++L d +  I++  +
  KKY18196.1 161 ELRKLKKAFGGFEDAQKSIDKTKADISELKKAMDNpeAKALSDRYNTIQNELN 213
                 99999999999**********************9766899********98755 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.2
   DASH_Duo1  14 evienviesLkkaksnie 31 
                 +v+e+++++L + k+n e
  KKY18196.1 416 AVVEKLKAKLAHWKENQE 433
                 678888888888885544 PP

>> DUF585  Protein of unknown function (DUF585)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   4.2e-05      0.15     142     195 ..     176     229 ..     170     239 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.2e-05
      DUF585 142 klasdssnceieevrvtgdtpkeltlgdrymgideefqttntdyditlqimnpi 195
                 + + d ++++i e++ + d p+  +l dry  i++e++  ++d d   + +n +
  KKY18196.1 176 QKSIDKTKADISELKKAMDNPEAKALSDRYNTIQNELNEIKSDQDDVYKNLNSL 229
                 556789999**********************************99888888876 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   8.2    0.0033        12      75     189 ..      30     147 ..      15     153 .. 0.85
   2 ?   14.7  20.2   1.8e-06    0.0066      22     163 ..     130     272 ..     125     310 .. 0.91
   3 ?   -2.0   0.4      0.21   7.7e+02     134     150 ..     436     452 ..     411     460 .. 0.43

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0033
                 HHTHHHHHT-GGGT--S-SHHHHHTTHHHHHHH..HHHHHHHHHHHHHHHHHTHHHHTTTTTHHHHHHHHHHHHHHHHT--TTTTHHHHHHHHHH.HHH CS
        EzrA  75 kklpeieellfeaeelldkykfkkakkklaele..eeldeveekikkileelkelteseeknreeieklkekYrelrkkllanrfsygealeele.kql 170
                 +k  +i +  f +ee +d+ + +++++kl++++  ++ + v ek k++++el+e++++++ n++   + +e+  +l  +l+++ ++ ++a  ++  k++
  KKY18196.1  30 EKAHAIVQAKFTCEEVADQGSKNEIRAKLDSARpnNKDSPVAEKQKALRAELAEIRQKQSGNKNSRASQQERLSQLDAQLKSKIAEQKNARGKIPyKNI 128
                 556667777788999999999999999998886114455699****************************************************6589* PP

                 HHH---------------- CS
        EzrA 171 eniekefsefeeltengdy 189
                 e+i++e+s +e+  e+g  
  KKY18196.1 129 EEIDREISRLEKQVESGTM 147
                 *************999976 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.8e-06
                 -THHHHHHHHHHHHHHHHHHHHHT..TTSSS-S---TTTHHHHHHHHHHHHHHHHHHTHHHHHT-GGGT--S-SHHHHHTTHHHHHHHHHHHHHHHHHH CS
        EzrA  22 kikkeideLeerkneiknlpvqee..lskvkklnltgeseekfeewkkkwdeiktkklpeieellfeaeelldkykfkkakkklaeleeeldeveekik 118
                 +i++ei +Le++ ++     v+e+  l++v +l++ ++    fe+ +k+ d+ k  ++ e+++ + + e+ + + ++++++++l+e++++ d+v ++++
  KKY18196.1 130 EIDREISRLEKQVESGTMKIVDEKktLNQVTELRKLKKAFGGFEDAQKSIDKTKA-DISELKKAMDNPEAKALSDRYNTIQNELNEIKSDQDDVYKNLN 227
                 67899999*99999866665554334**************************999.******************************************* PP

                 HHHHHHTHHHHTTTTTHHHHHHHHHHHHHHHHT--TTTTHHHHHH CS
        EzrA 119 kileelkelteseeknreeieklkekYrelrkkllanrfsygeal 163
                 ++++e ++l + ++ + ++i ++k++Y + r+ +++++++  +a 
  KKY18196.1 228 SLRDEREKLYKEQQAKYTAIREVKDNYFKSRRAYKEYEDKVYQAR 272
                 ************************************999988775 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.21
                 THHHHHHHHHHHHHHHH CS
        EzrA 134 nreeieklkekYrelrk 150
                  +  +ek++ + ++l+k
  KKY18196.1 436 TKINVEKAQREIDRLEK 452
                 12222222222222222 PP

>> Osmo_CC  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.3   0.00076       2.7      19      34 ..     126     141 ..     125     156 .. 0.86
   2 ?    2.3   0.6     0.057     2e+02       2      26 ..     194     217 ..     193     239 .. 0.76
   3 ?   -1.7   0.1         1   3.7e+03      21      33 ..     440     452 ..     438     471 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00076
                 HHHHHHHHHHHHHHHH CS
     Osmo_CC  19 qkvedideeIaaLeek 34 
                 +++e+id eI +Le++
  KKY18196.1 126 KNIEEIDREISRLEKQ 141
                 579***********96 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.057
                 XXXXXXXXXXXXXTHHHHHHHHHHH CS
     Osmo_CC   2 dreEAkelLqehYdnIEqkvedide 26 
                 d  EAk+ L+++Y+ I +++++i  
  KKY18196.1 194 DNPEAKA-LSDRYNTIQNELNEIKS 217
                 5679998.69999999999988865 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1
                 HHHHHHHHHHHHH CS
     Osmo_CC  21 vedideeIaaLee 33 
                 ve    eI +Le+
  KKY18196.1 440 VEKAQREIDRLEK 452
                 7777889999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2951  (0.164594); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.22u 0.37s 00:00:01.59 Elapsed: 00:00:00.57
# Mc/sec: 2767.01
//
Query:       KKY18197.1  [L=229]
Description: putative rna polymerase subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-33  114.6   0.1    2.5e-33  113.8   0.1    1.5  1  RNA_pol_Rpb5_C  RNA polymerase Rpb5, C-terminal domain
    1.4e-13   51.2   0.0    2.5e-13   50.4   0.0    1.3  1  RNA_pol_Rpb5_N  RNA polymerase Rpb5, N-terminal domain
    0.00048   20.1   0.0     0.0011   19.0   0.0    1.7  1  Mrr_cat         Restriction endonuclease


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb5_C  RNA polymerase Rpb5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.1   4.2e-37   2.5e-33       1      73 []     156     228 ..     156     228 .. 0.99

  Alignments for each domain:
  == domain 1  score: 113.8 bits;  conditional E-value: 4.2e-37
                     ..-TSSSS--EEEEE-HHHHHHHHHHTT--TTCSS-EETTSHHHHCCT--TTSEEEEEEEETTTEEEEEEEEE CS
  RNA_pol_Rpb5_C   1 vnitkHelvPkhevlseeekkellkklkikeeqLPkisksDpvarylglkkGdvvkItrksetageavtYRlV 73 
                     vnit+HelvPkh++ls eek+ ll++++++e+qLP+i+++Dpvarylglk+G+vvkI+rksetag++ +YR V
      KKY18197.1 156 VNITRHELVPKHVLLSAEEKEVLLDRYRLRETQLPRIQATDPVARYLGLKRGNVVKIIRKSETAGRYASYRWV 228
                     7**********************************************************************98 PP

>> RNA_pol_Rpb5_N  RNA polymerase Rpb5, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   4.1e-17   2.5e-13      19      87 ..      23     110 ..      17     112 .. 0.86

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 4.1e-17
                     CCCCEE--CCCCT--CHHHHCCSB-.SSSSB-GCCT-EEEE...............SS.SS...--EEEEEE-SSTTE-TCCCHHHCH CS
  RNA_pol_Rpb5_N  19 kdRgYlvaeeelnisleeFkekygd.epkevdrekltisas...............kkddp...seqilVfFpeekkvgvktikkyae 87 
                     +d +Y v++eel+isl+eF++ky++ +++ +dr+k++ +a+                +++p    ++i+V+F++e++vgvk+++++a+
      KKY18197.1  23 RDMHYAVQQEELKISLAEFRQKYAEiGTQGPDRRKMRTQAApseqmiklhtpratkTNPNPvskAGTIWVEFSPEPTVGVKHLRQFAQ 110
                     7899********************975666889999999999999999998888663344466688********************98 PP

>> Mrr_cat  Restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.8e-07    0.0011      60      98 ..      99     137 ..      86     165 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.8e-07
                 -B-HHHHHHHHHHCTTS..SEEEEEESS-B-HHHHHHHH CS
     Mrr_cat  60 kvgvkeVqeligalkkrgadkgifvttsdftkaAreeae 98 
                 +vgvk+++++++ l+++++++gif+t + +t+aA+++ e
  KKY18197.1  99 TVGVKHLRQFAQYLDQNRFSTGIFITQGPVTAAAMRAFE 137
                 8*********************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.52
# Mc/sec: 1335.35
//
Query:       KKY18198.1  [L=886]
Description: putative methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-32  113.1   0.0    4.9e-25   88.3   0.0    3.2  2  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
     0.0039   17.3   0.0      0.007   16.5   0.0    1.3  1  FtsJ             FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.1e-07   0.00097       3      33 ..     159     191 ..     157     203 .. 0.78
   2 !   88.3   0.0   5.5e-29   4.9e-25      33     199 ..     217     451 ..     214     452 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.1e-07
                      HH---TT-EEEESS-TTSHHHHHHHHH..TTTT CS
  Methyltr_RsmB-F   3 lLapqeeetilDlcaaPGgKTthiael..mknk 33 
                      l++ +++ t+lDlcaaPG+K + ++e+    ++
       KKY18198.1 159 LMDIKPDMTVLDLCAAPGSKSAQLLEMvlAGQE 191
                      57788999******************9433444 PP

  == domain 2  score: 88.3 bits;  conditional E-value: 5.5e-29
                      TSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCCHHHHCC................EEEEEEEE--CCGGGTTT-TCHHHH--HHHHHH CS
  Methyltr_RsmB-F  33 kgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg..............elfDriLlDaPCsgtgvirrdpdvklrrkekdiaq 112
                      +g ++A+d++ +R++ +++ lkrL+  n+iv++ Da+ ++++                  +fDriL D+PCsg g+ r++ ++  + ++++   
       KKY18198.1 217 TGLLIANDVDYKRAHMLVHQLKRLSSANLIVTNHDATMFPSIKLPsdtsadgkpqpgkyLKFDRILADVPCSGDGTSRKNLEIWRTWTPQNALG 310
                      7889*********************************9997765556888999***99999**********************8889******* PP

                      HHHHHHHHHHHHCCCEEEEEEEEEEES--STTTTHHHHHHHHHH-...TTEEEESSBSTTSTTSSECEEC........................ CS
  Methyltr_RsmB-F 113 laklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkr...edvelvetelsepkglklgeea........................ 179
                      l+  q ++l  a+++lk gG +vYsTCs+++ E+e+v+ +a+ +    e+v+lv+ + + pk  ++                            
       KKY18198.1 311 LHVTQTRILVRALQMLKVGGRVVYSTCSMNPIEDEAVLVAAIDRCggpEKVRLVDCSNELPKLKRFPG-Lktwsvmdrtgelwhsyadveerkr 403
                      **************************************999998533378888888544444333322.1358899999999999999999999 PP

                      ............................TSEEE-TTTTSS-SEEEEEE CS
  Methyltr_RsmB-F 180 ............................gtlrllPhtenkdgffiakl 199
                                                   ++r++Ph++++ +ffia l
       KKY18198.1 404 ekddatvnklsetmfpptdpalrnlpleHAMRVYPHSQDTGAFFIAVL 451
                      999999999999999999999999999999999999999999999987 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   7.8e-07     0.007      19     133 ..     162     334 ..     155     351 .. 0.59

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7.8e-07
                 S-TT-EEEECT-TTSHHHHHHCCT.............................T.-SEEEEEESSSS.........HHHTTEEEE..CS-CCCSSHHHH CS
        FtsJ  19 fkpgktvvDlgaaPGgwsqvllqrl............................gakgkvvavDlqpm.........aplpgvtti..qgditdpetiek 78 
                 +kp++tv+Dl+aaPG+ s  ll+ +                              +g ++a D+            + l+  ++i  + d t+   i++
  KKY18198.1 162 IKPDMTVLDLCAAPGSKSAQLLEMVlagqeerieaaanayqvgqtdsgydddgRSTGLLIANDVDYKrahmlvhqlKRLSSANLIvtNHDATMFPSIKL 260
                 57999****************999988888777777766666655555544431147777777755544444433322222222244667777777776 PP

                 HCHCHHH........SSEEEEEE--S-..SS-CHHHHHHHHH........CCCCHHHHCC.HCCCCECCCEEEE CS
        FtsJ  79 ikealse........rkvdlvvsDgap..dvsgvhdldeylq........sqLllaalel.alkllkpggtfvl 133
                  +++  +         k+d +++D+    d + +++l+  ++        ++  +  + + al++lk gg +v 
  KKY18198.1 261 PSDTSADgkpqpgkyLKFDRILADVPCsgDGTSRKNLEIWRTwtpqnalgLHVTQTRILVrALQMLKVGGRVVY 334
                 66655557787777777888888875311222223333333355554422222222222234456666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (886 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.49
# Mc/sec: 5387.53
//
Query:       KKY18199.1  [L=219]
Description: putative adenine phosphoribosyltransferase 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-17   62.1   0.0    5.5e-17   61.7   0.0    1.1  1  Pribosyltran   Phosphoribosyl transferase domain
    0.00043   19.8   0.0    0.00055   19.4   0.0    1.2  1  UPRTase        Uracil phosphoribosyltransferase
  ------ inclusion threshold ------
      0.042   13.4   0.0      0.058   12.9   0.0    1.2  1  PRTase_2       Phosphoribosyl transferase
       0.15   11.7   0.0       0.26   11.0   0.0    1.3  1  MoCF_biosynth  Probable molybdopterin binding domain


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   1.2e-20   5.5e-17      23     125 ..      84     195 ..      65     217 .. 0.82

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 1.2e-20
                   EEE..--GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE...............EE----TTSEEEEE-SEESSSHHHHHHHHHH CS
  Pribosyltran  23 lee..yngkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdes.......rlledpagkkVliVDDildtGgTllaalelL 110
                   l++   ++kpd+++g + +G+ f++ la +L++ ++  rk+ + p+++ eaa   ++e        ++ + ++g+kV+iVDDi++tGgT  aa +l+
    KKY18199.1  84 LQTfgEENKPDLILGLEARGFLFGPSLALRLGAGFVAARKKGKLPGPTVEAAY--EKEYghdyfqmQADAVKEGQKVIIVDDIIATGGTAAAAGDLV 178
                   44455689*******************************************84..444578************************************ PP

                   HCC-BSEEEEEEEE..E CS
  Pribosyltran 111 kekgpeevriavlv..d 125
                   k  g ++++ + l+  +
    KKY18199.1 179 KQLGGKVLEYIFLMelE 195
                   ******99998888553 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.2e-07   0.00055     112     157 ..     144     191 ..     113     205 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.2e-07
     UPRTase 112 ynkLPkki..aertvlllDpviaTGgsaaaaiqlLkergvgeekIlvl 157
                 y +++++   + ++v+++D +iaTGg+aaaa +l+k+ g ++ + ++l
  KKY18199.1 144 YFQMQADAvkEGQKVIIVDDIIATGGTAAAAGDLVKQLGGKVLEYIFL 191
                 44555555567788**********************999887655554 PP

>> PRTase_2  Phosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.3e-05     0.058     110     143 ..     144     177 ..     134     204 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.3e-05
    PRTase_2 110 lyaedeellaaakelvLvDDEistGktalnlira 143
                  ++ +++++++ +++++vDD i+tG ta++  + 
  KKY18199.1 144 YFQMQADAVKEGQKVIIVDDIIATGGTAAAAGDL 177
                 557788999******************9876544 PP

>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.7e-05      0.26      57     106 ..     158     209 ..     137     217 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.7e-05
                    S...SEEEEESS-SSSTT--HHHHHHHHHSEE-HHHHHHHHHHHHHHCCTTSH CS
  MoCF_biosynth  57 a...dviittGGtGptpdDvtpealaklfekelegfeeafrrvslkpgkpvgv 106
                    +   d ii tGGt +++ D++++   k++e  + ++e  f + + k ++pv++
     KKY18199.1 158 ViivDDIIATGGTAAAAGDLVKQLGGKVLEY-IFLMELEFLHGRDKLEAPVYT 209
                    345588*****************99999996.888888888888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.48
# Mc/sec: 1382.10
//
Query:       KKY18200.1  [L=386]
Description: hypothetical protein UCRPC4_g05085 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1430  (0.079759); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.49
# Mc/sec: 2383.90
//
Query:       KKY18201.1  [L=425]
Description: putative mannitol 1-phosphate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-07   30.6   0.0      3e-07   30.0   0.0    1.3  1  FAD_binding_3  FAD binding domain
  ------ inclusion threshold ------
      0.013   14.7   0.2      0.076   12.2   0.1    1.9  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      0.016   15.4   0.1      0.036   14.3   0.1    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      0.057   13.0   0.0       0.17   11.4   0.0    1.9  1  Poty_coat      Potyvirus coat protein


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   6.7e-11     3e-07       4     175 ..      23     185 ..      20     241 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 6.7e-11
                    EEEE--SHHHHHHHHHHHHTTHHEEEE.ESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECC..CCEEEEEEECCCCCEEEEEHHCHHCS CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlv.ekrsttvvlpradglnqrtmellrqlGledrilaegapne..lmgealynelsdtpkaradlelessp 96 
                    ++I+G+G+ G+  a+     G +++ + e+  + ++ + +  ++    ++l+  Gl+d +l + ++n   +m+ ++y +     +   +++ e+++
     KKY18201.1  23 IAIIGGGLGGMAFANAAVHVGLNNIKLyEQAPDFTEVGAGVNITRNANRILDAYGLKDAMLWKSSRNPpcYMEYHNYRT----GEYVGHID-EFGA 113
                    68*********************8866155566666667778888899************9777665522666666666....78899999.9*** PP

                    T-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGG CS
  FAD_binding_3  97 ervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgie 175
                    ++   +    l+ +L+++  +++l +++k ++     + +g++ +++ + +g     +a+ +vG+DG +S vr+ +gi+
     KKY18201.1 114 PNSRQIHRAHLLDVLRQQIPKTALYTGKKLRLI----EYKGEEYVLTFE-DGSM--STADIVVGCDGIKSVVRQHMGIN 185
                    ******************777777777776666....666766777776.5555..37*******************97 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.7e-05     0.076     143     178 ..      21      57 ..       6      82 .. 0.62
   2 ?    0.1   0.0     0.086   3.9e+02     185     239 ..     120     176 ..      95     188 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.7e-05
                  SEEEEES-SHHHHHHHHHHHHHT-E.EEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2 143 krivvvGgGyiGvElAaalaklgke.vtlveardrll 178
                  +ri+++GgG+ G+ +A a+  +g + + l e+++ + 
   KKY18201.1  21 QRIAIIGGGLGGMAFANAAVHVGLNnIKLYEQAPDFT 57 
                  5555555555555555555555554455555555554 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.086
                  HHHHHHHHHHHT..TEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEE CS
                  xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 185 lsaaleealeke..GvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrp 239
                   +a l ++l+++  + ++++g++   i+ +ge++ ++ edg+   ad vv + G++ 
   KKY18201.1 120 HRAHLLDVLRQQipKTALYTGKKLRLIEYKGEEYVLTFEDGSMSTADIVVGCDGIKS 176
                  56666677777777788888999988888888778999************9999875 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   8.1e-06     0.036       1      31 [.      25      56 ..      25      82 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.1e-06
                   EE--SHHHHHHHHHHHCCTE.EEEEE-SSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagf.dvlllekrdrl 31
                   I+G+Gl+G+++A ++   g+ ++ l+e+++++
     KKY18201.1 25 IIGGGLGGMAFANAAVHVGLnNIKLYEQAPDF 56
                   9***************999967*****99986 PP

>> Poty_coat  Potyvirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.7e-05      0.17      33      86 ..     279     332 ..     263     394 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.7e-05
   Poty_coat  33 vperieklkkYvPdqqdientratqeqlekWye..avrrelekteeefmstilpgl 86 
                 v e ie l+kY Pd   +++t+  +e ++kW++  ++++++e +    ++til  +
  KKY18201.1 279 VQELIEGLRKYSPDGMMLKQTLYVREPVDKWFQcqGTCMAIESG--IALATILRNW 332
                 56889***************************722456666554..4468888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 2782.24
//
Query:       KKY18202.1  [L=1517]
Description: putative abc transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-50  169.6   0.0    8.4e-30  104.1   0.0    2.5  2  ABC_tran      ABC transporter
    1.8e-42  145.9  35.2      2e-29  103.1  14.0    2.8  2  ABC_membrane  ABC transporter transmembrane region
      5e-13   49.0   0.0    0.00023   20.7   0.0    4.1  4  SMC_N         RecF/RecN/SMC N terminal domain
      2e-06   28.4   0.2    0.00082   19.9   0.0    2.5  2  AAA_23        AAA domain
    5.2e-06   25.7   0.0     0.0014   17.8   0.0    2.3  2  T2SSE         Type II/IV secretion system protein
    2.8e-05   23.7   0.1      0.094   12.5   0.0    2.8  2  AAA_29        P-loop containing region of AAA domain
    5.8e-05   23.4   0.0       0.53   10.5   0.0    3.2  3  AAA_22        AAA domain
    7.6e-05   22.7   0.1      0.053   13.4   0.0    2.4  2  RsgA_GTPase   RsgA GTPase
     0.0001   22.3   7.1        2.8    7.7   0.1    4.1  4  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    0.00013   22.0   0.2       0.23   11.6   0.0    2.6  2  MMR_HSR1      50S ribosome-binding GTPase
    0.00095   19.6   0.2        1.5    9.2   0.0    3.1  2  AAA_16        AAA ATPase domain
     0.0051   16.0   0.2        1.8    7.7   0.0    3.0  2  NB-ARC        NB-ARC domain
  ------ inclusion threshold ------
      0.012   14.5   0.0        4.3    6.1   0.0    2.3  2  AAA_10        AAA-like domain
      0.015   15.0   0.1        3.7    7.2   0.0    3.0  3  IstB_IS21     IstB-like ATP binding protein
      0.018   14.1   0.1       0.04   12.9   0.1    1.5  1  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
      0.018   14.3   0.0        3.6    6.8   0.0    2.3  2  Zeta_toxin    Zeta toxin
      0.023   13.5   0.0      0.062   12.1   0.0    1.6  2  Adeno_IVa2    Adenovirus IVa2 protein
      0.034   13.9   0.0        6.1    6.5   0.0    3.0  3  AAA_30        AAA domain
      0.044   13.9   1.3       0.71    9.9   0.1    2.3  2  DUF87         Helicase HerA, central domain
       0.06   13.1   0.0       0.35   10.6   0.0    2.1  2  AAA_24        AAA domain
      0.063   13.7   0.0        8.7    6.8   0.0    3.2  3  AAA           ATPase family associated with various cellular 
      0.085   12.4   0.0          2    7.9   0.0    2.4  2  AAA_27        AAA domain
      0.099   12.7   0.6         12    5.9   0.1    2.4  2  Dynamin_N     Dynamin family
       0.11   12.4   0.1          3    7.7   0.0    2.7  2  NTPase_1      NTPase
       0.12   12.3   1.8        7.3    6.5   0.0    3.2  3  NACHT         NACHT domain
       0.12   12.6   0.0         50    4.2   0.1    3.4  3  SbcCD_C       Putative exonuclease SbcCD, C subunit
       0.15   11.2   0.2        1.9    7.6   0.0    2.1  2  DUF2075       Uncharacterized conserved protein (DUF2075)
       0.35   10.4   1.5        1.4    8.4   0.2    2.1  2  cobW          CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.0   5.5e-20   3.5e-17       1     135 [.     575     729 ..     575     731 .. 0.84
   2 !  104.1   0.0   1.3e-32   8.4e-30       1     137 []    1246    1427 ..    1246    1427 .. 0.87

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 5.5e-20
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG........B-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke........qeleslrkeigvlpqepqlfpeltvren.........esd 82 
                 l++++l++ ++ + +i G++G+GKS Ll++++g+++  +G i++ + +++             +    i++++q+p + + + +++n         e  
  KKY18202.1 575 LRDLNLQFPNNALSVISGPTGSGKSLLLNAILGEVDVLSGYINVPKSPSSAqrfddkatAVDWIIPTAIAFVSQTPWIENAT-IKNNiifglpfdaE-- 670
                 6899**************************************9998888888898887767788999********9998888.9999*****95551.. PP

                 TCHHHHHHHSTTGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 xxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEp 135
                  + +k+l+   l++        ++t v+ ++ sLSgGqk r+ lara+ +++ +l++D+ 
  KKY18202.1 671 -RYSKVLEACALVQdlslfedGDETEVGAQGISLSGGQKWRLTLARAMYSRAGILVMDDV 729
                 .444444444444444455556789999999***************************85 PP

  == domain 2  score: 104.1 bits;  conditional E-value: 1.3e-32
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxx RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsk 91  
                  lk ++++ ++++++++vG++GaGKStL  ++ + l+  +G+i++dg d+++++l+ lr++++++pq+p lf+++ +r+n       sd +i  al +
  KKY18202.1 1246 LKGLTFTAERNQRIGVVGRTGAGKSTLSLAIFRFLQIRSGSITIDGVDISKIRLHDLRSRLSIIPQDPVLFSGT-IRSNldpfdqFSDHQIRSALMR 1341
                  7899**********************************************************************.*********9566666666666 PP

                  STTGG........................................TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  xxxxx........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   92 lglke........................................lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                  + l+                                            +++ s++s+LS+Gqkq ++lara+l++pk+l+lDE+t+
  KKY18202.1 1342 VHLIPsetptplpeptnqssstsvtavepgisspsvspsnanvfhSLSHPIASGGSNLSQGQKQLLCLARAILSRPKILILDEATS 1427
                  6666666666667777777777777777777777777777777777888888999*****************************96 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   3.6   2.8e-18   1.8e-15      95     270 ..     336     509 ..     329     513 .. 0.93
   2 !  103.1  14.0   3.1e-32     2e-29       1     250 [.     873    1162 ..     873    1187 .. 0.90

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 2.8e-18
                   SCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH CS
  ABC_membrane  95 nsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgir 191
                   +s ++++++++ d++++  + +++   +  +   +v++  +++++gw+  l++l+ ++l++++++ +a +    +k  +k ++k++++++E+l+gir
    KKY18202.1 336 QSRSDIVNMFAVDANQIALFAAQNTEYVNFAGKFIVSVAFLLVLIGWQSLLAGLVGIFLLFPINKSLAARYGGKQKMLMKIRDKRTKLTTEALNGIR 432
                   7889************************9999999999999999***************************************************** PP

                   HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHH CS
  ABC_membrane 192 tVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfail 270
                    +k  + ee+  ek    +ee+++  +++a++n++ ++i+  l+ ++ ++   ++t+  i+g+l ++ +++ +slf ++
    KKY18202.1 433 QIKFSAIEEQWAEKLLVVREEELST-LWSARLNNIYMSIASELTPVVLTAL-SLATYSLIHGNLLPSVAFTSISLFLQI 509
                   *****************99999987.9999999999999999988776665.78999999********99999999876 PP

  == domain 2  score: 103.1 bits;  conditional E-value: 3.1e-32
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS...TCCHH........................................HHHHHHHHHHHHHHH CS
  ABC_membrane    1 liliillailagvlsplfplvlgrildtlldk...gdpet........................................ealnvysllllllgl 52  
                    +i++i+l ++a+ l +  +++ + + +++ ++                                                 +l +y+ ++ ++ +
    KKY18202.1  873 WIFLIILFLFAESLTVGKNYWVKIWASSFGKSqhlR---LsaylhqssdptryldtarfhydvanndsqllstaqidmhsKNLWFYLGVYCIISI 964 
                    578899999999999999999999999998753330...255666677777899999999999999999999999999999999*********** PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHH CS
  ABC_membrane   53 aqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvl 147 
                    +++++++ ++y ++  g r+s+r+ +++++++lr+p+++ dt+++G++l+r+t d  ++++gl++++  ff  ++ ++g+++ ++++++ + l  
    KKY18202.1  965 VSVVFSVCRVYNIYAGGLRASRRIFQDMLHSVLRAPLRWLDTTPTGRILNRFTGDFTNMDSGLAQSFYYFFGCVWEMLGIMGAAVFVSPFMILFA 1059
                    *******************************************************************************************9999 PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  148 lailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyala 242 
                    + +l  + l++  +    +++k+ e+++ +++ s++  sl g+ t++af +  +f+++  + ++++ ++++   +++++l++++ + ++l+ a++
    KKY18202.1 1060 ILLLGTCSLFARRYLAAARTVKRLESTSKSPVISHFAASLDGLSTIRAFSKTTEFQSRMYNLIDSWTTCNWHNSLFRNWLMIRIGITASLFSAAV 1154
                    999999*********************************************************************************99999999 PP

                    HHHHHHHH CS
  ABC_membrane  243 lwfGttlv 250 
                    + f +t+ 
    KKY18202.1 1155 ATFVVTTR 1162
                    87776654 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00078       0.5      24      49 ..     585     607 ..     573     613 .. 0.83
   2 !   10.4   0.0   0.00051      0.33     136     175 ..     702     737 ..     648     744 .. 0.79
   3 ?    2.7   0.0      0.11        72      27      46 ..    1259    1277 ..    1246    1287 .. 0.80
   4 !   20.7   0.0   3.6e-07   0.00023     111     210 ..    1287    1468 ..    1274    1474 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00078
                 SSEEEEEESTTSSHHHHHHHHHHHCT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAilFvLG 49 
                 + +++i Gp GSGKs ll+Ai   LG
  KKY18202.1 585 NALSVISGPTGSGKSLLLNAI---LG 607
                 56799****************...55 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00051
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDekn 175
                 +LSgG+k      L +A  ++++a + ++D++ +aLD++ 
  KKY18202.1 702 SLSGGQK----WRLTLARAMYSRAGILVMDDVFSALDAHV 737
                 79****9....58899999******************875 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.11
                  EEEEESTTSSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxx RF
       SMC_N   27 taivGpNGSGKsnlldAilF 46  
                    +vG+ G+GKs l  Ai F
  KKY18202.1 1259 IGVVGRTGAGKSTLSLAI-F 1277
                  569************999.4 PP

  == domain 4  score: 20.7 bits;  conditional E-value: 3.6e-07
                  EEETTEEE-HHHHHHHHHCTT-STT........................................................................ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx........................................................................ RF
       SMC_N  111 ykingkevtkkevsellesagiske........................................................................ 135 
                  ++i+g +++k  +++l ++  i ++                                                                        
  KKY18202.1 1287 ITIDGVDISKIRLHDLRSRLSIIPQdpvlfsgtirsnldpfdqfsdhqirsalmrvhlipsetptplpeptnqssstsvtavepgisspsvspsnan 1383
                  6777777777777777777777777777888888888888888888888888888888888899999999999999999999999999999999999 PP

                  ..............CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEE CS
                  ..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 ..............lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvg 210 
                                +LS G+k+L+ la   Ai   ++  + +lDe  +a D +  + + + ++e+ +++ ++v+++r  ++++ d+++ 
  KKY18202.1 1384 vfhslshpiasggsNLSQGQKQLLCLAR--AI--LSRPKILILDEATSAVDLETDQLIQRSIREEFSDTTLLVVAHRLSTVADFDRILV 1468
                  99999999999999*********87764..34..45556899**************************************999998865 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.3e-06   0.00082      11      39 ..     576     605 ..     571     615 .. 0.92
   2 ?    5.6   0.1     0.031        20      24      39 ..    1261    1276 ..    1248    1290 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.3e-06
      AAA_23  11 rdqeidF.skgltlItGpNGaGKTTildAi 39 
                 rd +++F ++ l +I+Gp+G+GK+ +l+Ai
  KKY18202.1 576 RDLNLQFpNNALSVISGPTGSGKSLLLNAI 605
                 8999999999*******************9 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.031
      AAA_23   24 ItGpNGaGKTTildAi 39  
                  ++G +GaGK+T+  Ai
  KKY18202.1 1261 VVGRTGAGKSTLSLAI 1276
                  69*********97777 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.1e-06    0.0014     129     154 ..     585     610 ..     565     617 .. 0.86
   2 ?    5.4   0.0     0.013       8.1     116     159 ..    1243    1286 ..    1199    1322 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.1e-06
       T2SSE 129 rglilvsGgTgsGKttllyallkein 154
                 + l ++sG+TgsGK+ ll+a+l e++
  KKY18202.1 585 NALSVISGPTGSGKSLLLNAILGEVD 610
                 55679*****************9986 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.013
       T2SSE  116 ekiaevlrkavrerglilvsGgTgsGKttllyallkeinksder 159 
                  + i + l    ++++ i v G Tg GK+tl  a+  +++ ++  
  KKY18202.1 1243 PSILKGLTFTAERNQRIGVVGRTGAGKSTLSLAIFRFLQIRSGS 1286
                  4555555555577888999************9999999877444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00015     0.094      18      42 ..     581     605 ..     571     607 .. 0.78
   2 !    7.9   0.0    0.0039       2.5      22      38 ..    1256    1272 ..    1246    1281 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00015
      AAA_29  18 eidlkgatlltGpsGsGKSTllDAi 42 
                 ++  +   +++Gp+GsGKS ll Ai
  KKY18202.1 581 QFPNNALSVISGPTGSGKSLLLNAI 605
                 454344789*************998 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0039
      AAA_29   22 kgatlltGpsGsGKSTl 38  
                  ++ + ++G++G+GKSTl
  KKY18202.1 1256 NQRIGVVGRTGAGKSTL 1272
                  4456789*********9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00083      0.53       8      53 ..     588     624 ..     584     636 .. 0.74
   2 !    8.2   0.0    0.0044       2.8      10      35 ..    1261    1286 ..    1253    1314 .. 0.75
   3 ?   -0.2   0.0       1.7   1.1e+03      82     103 ..    1409    1429 ..    1358    1458 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00083
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstss 53 
                  v+ G++G+GK++ll+ +l +          ++   ++++p+s ss
  KKY18202.1 588 SVISGPTGSGKSLLLNAILGEV---------DVLSGYINVPKSPSS 624
                 689*************999876.........333336666666644 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0044
      AAA_22   10 vtGesGtGKTtllrrlleqldeeaka 35  
                  v+G +G+GK+tl   +++ l++++  
  KKY18202.1 1261 VVGRTGAGKSTLSLAIFRFLQIRSGS 1286
                  89***************999876544 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.7
      AAA_22   82 leqalraravielliiDEaqh.l 103 
                  l++a+ +r  +++li+DEa   +
  KKY18202.1 1409 LARAILSR--PKILILDEATSaV 1429
                  33333444..569*****97744 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   8.2e-05     0.053      92     126 ..     577     612 ..     559     621 .. 0.81
   2 ?    6.6   0.0     0.011       6.9      99     128 ..    1256    1285 ..    1206    1290 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.2e-05
                  HHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  92 elkellkd.ktsvlvGqSGvGKStLinallpelelk 126
                  +l+ ++ +  +sv+ G++G GKS L+na+l+e ++ 
   KKY18202.1 577 DLNLQFPNnALSVISGPTGSGKSLLLNAILGEVDVL 612
                  55555555489*******************998765 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.011
                   TSEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase   99 dktsvlvGqSGvGKStLinallpelelktg 128 
                   ++ + +vG +G+GKStL  a+   l+++ g
   KKY18202.1 1256 NQRIGVVGRTGAGKSTLSLAIFRFLQIRSG 1285
                   4677799**********8777666666555 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.3    0.0045       2.9       2      48 ..     588     624 ..     587     640 .. 0.72
   2 ?   -0.1   0.0         1   6.5e+02     219     298 ..     673     762 ..     641     766 .. 0.71
   3 !    7.7   0.1    0.0044       2.8       3      41 ..    1260    1293 ..    1259    1324 .. 0.71
   4 !    7.3   0.1    0.0057       3.6     236     284 ..    1398    1447 ..    1388    1458 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0045
      AAA_21   2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipsl 48 
                  v+ Gp gsGKS LL a+           g+ d+lsg+ + +k ps+
  KKY18202.1 588 SVISGPTGSGKSLLLNAI----------LGEVDVLSGYINVPKSPSS 624
                 6899**************..........3455555555555555555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1
      AAA_21 219 r..........gvvflengdgqelparel..SdGtkrllalltallralkkgsllliDEpEngLHPkllrrll..ellkelsrngaQviltTHS 298
                 +          ++ ++e+gd  e+ a  +  S G+k  l l+ a+++++   ++l+ D++ + L+ ++ ++++  +l+ + ++ g   il+TH 
  KKY18202.1 673 SkvleacalvqDLSLFEDGDETEVGAQGIslSGGQKWRLTLARAMYSRA---GILVMDDVFSALDAHVGKHIYdhGLMGDIAE-GRTRILATHH 762
                 1444555555567777888888888887755666554478888888888...****************999999999966666.4555777775 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0044
      AAA_21    3 vliGpNgsGKSnLLdaldllarldrdvegltdelsgggg 41  
                  +++G+ g+GKS+L  a+  + ++     +++++  +g++
  KKY18202.1 1260 GVVGRTGAGKSTLSLAIFRFLQI-----RSGSITIDGVD 1293
                  68**************9777664.....33333333333 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0057
      AAA_21  236 elSdGtkrllalltallralkkgsllliDEpEngLHP....kllrrllellke 284 
                  +lS+G+k+ll+l+ a+l+++   ++l++DE  +  +      ++r++ e +++
  KKY18202.1 1398 NLSQGQKQLLCLARAILSRP---KILILDEATSAVDLetdqLIQRSIREEFSD 1447
                  68******************...9******88877777776666777666655 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0055       3.5       3      23 ..     589     609 ..     588     636 .. 0.83
   2 !   11.6   0.0   0.00036      0.23       1      21 [.    1258    1278 ..    1258    1303 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0055
                 EEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgek 23 
                 +i G + +GKS L+na++ge+
  KKY18202.1 589 VISGPTGSGKSLLLNAILGEV 609
                 688***************984 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00036
                  EEEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1    1 evaivGrpNvGKStLinaltg 21  
                  ++++vGr+ +GKStL  a+++
  KKY18202.1 1258 RIGVVGRTGAGKSTLSLAIFR 1278
                  699************998876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0023       1.5      16      45 ..     575     606 ..     565     630 .. 0.78
   2 ?    6.8   0.1     0.012       7.9      27     156 ..    1259    1438 ..    1246    1453 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0023
      AAA_16  16 lervrsgrp..elvllsGesGvGKsslvrell 45 
                 l++++ + p   l ++sG+ G+GKs l++++l
  KKY18202.1 575 LRDLNLQFPnnALSVISGPTGSGKSLLLNAIL 606
                 5555555555445579************9997 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.012
      AAA_16   27 vllsGesGvGKsslvrellralekd...........................ggiflrgkcdqlesaipysalaqalareellrqllde......ae 90  
                  + ++G  G GKs+l  +++r l+ +                                                               +      + 
  KKY18202.1 1259 IGVVGRTGAGKSTLSLAIFRFLQIRsgsitidgvdiskirlhdlrsrlsiipQ-----------------------------------DpvlfsgTI 1320
                  5599***************9888885444444444444444444444444440...................................333333322 PP

      AAA_16   91 saeleawrekleeala....................................avpelagaea..............srllellkrll.allsrderp 136 
                   ++l++++++ + +++                                    ++p+++++ a              s l +  k+ll    +  +rp
  KKY18202.1 1321 RSNLDPFDQFSDHQIRsalmrvhlipsetptplpeptnqssstsvtavepgiSSPSVSPSNAnvfhslshpiasggSNLSQGQKQLLcLARAILSRP 1417
                  2233333333333333333344444444444444444444444455566777677777777766666666666666555555555554333333557 PP

      AAA_16  137 lvlvlDdlq.wadeaslqlla 156 
                   +l+lD++   +d ++ ql++
  KKY18202.1 1418 KILILDEATsAVDLETDQLIQ 1438
                  888888877444445555555 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.038        24      25      49 ..     590     614 ..     580     742 .. 0.56
   2 !    7.7   0.0    0.0028       1.8      21      43 ..    1257    1279 ..    1243    1287 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.038
                 EEESTTSSHHHHHHHHCCSHCCCCC CS
      NB-ARC  25 lvGmgGvGKttlakqilnksdeveg 49 
                 ++G  G+GK+ l++ il + d + g
  KKY18202.1 590 ISGPTGSGKSLLLNAILGEVDVLSG 614
                 7888888888888888887655544 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0028
                  EEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC   21 lvvalvGmgGvGKttlakqilnk 43  
                    +++vG+ G GK+tl+  i++ 
  KKY18202.1 1257 QRIGVVGRTGAGKSTLSLAIFRF 1279
                  4699*************999975 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0084       5.4      20      46 ..     584     610 ..     571     638 .. 0.84
   2 ?    6.1   0.0    0.0068       4.3      18      52 ..    1253    1287 ..    1244    1327 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0084
      AAA_10  20 nasasliiGdlGnGKSvlakllvlyis 46 
                 n+  s+i+G++G GKS+l + +   + 
  KKY18202.1 584 NNALSVISGPTGSGKSLLLNAILGEVD 610
                 77779*************999876555 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0068
      AAA_10   18 ktnasasliiGdlGnGKSvlakllvlyisllggka 52  
                   +++    ++G +G+GKS l+  ++ +++++ g +
  KKY18202.1 1253 AERNQRIGVVGRTGAGKSTLSLAIFRFLQIRSGSI 1287
                  577888899******************99998765 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.067        43      48      67 ..     586     605 ..     550     615 .. 0.76
   2 ?    7.2   0.0    0.0058       3.7      38      68 ..    1246    1277 ..    1238    1313 .. 0.76
   3 ?   -1.2   0.1       2.3   1.5e+03     105     147 ..    1413    1454 ..    1398    1470 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.067
   IstB_IS21  48 enivllGpsGvGKshlaial 67 
                 +  v+ Gp+G GKs l  a+
  KKY18202.1 586 ALSVISGPTGSGKSLLLNAI 605
                 445899********998775 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0058
   IstB_IS21   38 Latlsfi.ekkenivllGpsGvGKshlaialg 68  
                  L +l f+ e+++ i ++G +G+GKs l+ a+ 
  KKY18202.1 1246 LKGLTFTaERNQRIGVVGRTGAGKSTLSLAIF 1277
                  566777625678999*************9984 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.3
   IstB_IS21  105 rllkvdllilDdlgllpldqaeaellfeviekryerrsiiits 147 
                   l ++++lilD+  +  +d +  +l+ + i + +  +++++ +
  KKY18202.1 1413 ILSRPKILILDEA-TSAVDLETDQLIQRSIREEFSDTTLLVVA 1454
                  46789******96.45677777777777777777666666555 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   6.3e-05      0.04      18      66 ..    1245    1293 ..    1237    1298 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.3e-05
                  HHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE- CS
        MeaB   18 llerllakaGraqvvGltGvPGaGkstlvealglelrrrGkrvavlavD 66  
                  +l+ l+ +a r q++G+ G  GaGkstl  a+   l+ r   +++  vD
  KKY18202.1 1245 ILKGLTFTAERNQRIGVVGRTGAGKSTLSLAIFRFLQIRSGSITIDGVD 1293
                  788899999*******************999988888777777766666 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0      0.02        13      17      44 ..     586     613 ..     574     620 .. 0.80
   2 ?    6.8   0.0    0.0056       3.6      17      51 ..    1257    1291 ..    1244    1297 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.02
  Zeta_toxin  17 klillgGqpGAGKselaellkdelerqg 44 
                 +l +++G +G+GKs l++++  e++  +
  KKY18202.1 586 ALSVISGPTGSGKSLLLNAILGEVDVLS 613
                 67899***************99987555 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0056
  Zeta_toxin   17 klillgGqpGAGKselaellkdelerqgnvvrldp 51  
                    i ++G +GAGKs+l+ ++ + l+ +++ +++d+
  KKY18202.1 1257 QRIGVVGRTGAGKSTLSLAIFRFLQIRSGSITIDG 1291
                  556789**************999999999999986 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.7e-05     0.062      74     108 ..     571     606 ..     552     613 .. 0.80
   2 ?   -3.0   0.0       3.8   2.5e+03      88     103 ..    1258    1272 ..    1252    1277 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.7e-05
  Adeno_IVa2  74 ddGelsslnygl.qPviGviyGPtGsGksqllrnli 108
                 +   l  ln++  +  + vi+GPtGsGks ll +++
  KKY18202.1 571 HRFTLRDLNLQFpNNALSVISGPTGSGKSLLLNAIL 606
                 555667788875467899**************9987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.8
  Adeno_IVa2   88 viGviyGPtGsGksql 103 
                   iGv+ G tG+Gks l
  KKY18202.1 1258 RIGVV-GRTGAGKSTL 1272
                  58876.9*******98 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0096       6.1      18      38 ..     585     605 ..     580     625 .. 0.87
   2 ?    2.7   0.0      0.15        93      15      40 ..    1253    1278 ..    1249    1294 .. 0.76
   3 ?   -0.1   0.0         1   6.5e+02      81     111 ..    1401    1439 ..    1376    1453 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0096
      AAA_30  18 drvavltGpAGtGKttalkal 38 
                 + ++v+ Gp G+GK+ +l+a+
  KKY18202.1 585 NALSVISGPTGSGKSLLLNAI 605
                 5699**************998 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.15
      AAA_30   15 tsgdrvavltGpAGtGKttalkalre 40  
                  +++++   ++G+ G+GK+t+  a+ +
  KKY18202.1 1253 AERNQRIGVVGRTGAGKSTLSLAIFR 1278
                  5556667899*********8766655 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1
      AAA_30   81 k........grarlepgtllivDEagmvdtkqlaallka 111 
                  +        +ra l++ ++li DEa  +   ++++l+++
  KKY18202.1 1401 QgqkqllclARAILSRPKILILDEATSAVDLETDQLIQR 1439
                  04455556655667777********99987777877765 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.22   1.4e+02      28      45 ..     590     607 ..     588     610 .. 0.84
   2 ?    9.9   0.1    0.0011      0.71      24      45 ..    1257    1278 ..    1255    1289 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.22
       DUF87  28 ilgsTGsGKSntvavLle 45 
                 i g TGsGKS +   +l 
  KKY18202.1 590 ISGPTGSGKSLLLNAILG 607
                 6689******99998885 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0011
       DUF87   24 rHlAilgsTGsGKSntvavLle 45  
                  ++++++g+TG+GKS++   +++
  KKY18202.1 1257 QRIGVVGRTGAGKSTLSLAIFR 1278
                  689************9877765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.8   1.2e+03       6      22 ..     589     605 ..     585     613 .. 0.83
   2 ?   10.6   0.0   0.00054      0.35       2      89 ..    1256    1440 ..    1255    1448 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.8
      AAA_24   6 liyGpsgiGKTtlakel 22 
                 +i Gp g+GK+ l++ +
  KKY18202.1 589 VISGPTGSGKSLLLNAI 605
                 799********998765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00054
      AAA_24    2 klkiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdie....................swedfldevvel................... 59  
                  +++i ++G  g+GK+tl + +   + f+++  G+  +d+ ++ +i+                    ++   ld ++++                   
  KKY18202.1 1256 NQRIGVVGRTGAGKSTLSLAI---FRFLQIRSGSITIDGVDISKIRlhdlrsrlsiipqdpvlfsgTIRSNLDPFDQFsdhqirsalmrvhlipset 1349
                  789****************99...9999*****************8777777777777766666665555555555547777777888888888888 PP

      AAA_24   60 .............................................................aaeladyktlviDtideleelclaevirqn 89  
                                                                               +a l++ k+l++D ++ +++l ++++i+++
  KKY18202.1 1350 ptplpeptnqssstsvtavepgisspsvspsnanvfhslshpiasggsnlsqgqkqllclaRAILSRPKILILDEATSAVDLETDQLIQRS 1440
                  8888888888888888888888888888888888888888888888888888888888888888888888888888888888888887765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.014       8.7       3      25 ..     590     612 ..     588     640 .. 0.81
   2 ?    2.0   0.0      0.41   2.7e+02       3      34 ..    1261    1294 ..    1259    1323 .. 0.72
   3 ?   -0.0   0.0       1.8   1.1e+03      52      74 ..    1409    1432 ..    1384    1465 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.014
                 EESSTTSSHHHHHHHHHHHHTHE CS
         AAA   3 lyGppGtGKTllakavakelgve 25 
                 ++Gp G GK+ll +a+  e++v 
  KKY18202.1 590 ISGPTGSGKSLLLNAILGEVDVL 612
                 79***************998643 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.41
                  EESSTTSSHHHHHHHHHHHHTHE..EEEEETTTC CS
         AAA    3 lyGppGtGKTllakavakelgve..fleisgsel 34  
                  ++G  G GK++l  a+ + l+++   ++i+g ++
  KKY18202.1 1261 VVGRTGAGKSTLSLAIFRFLQIRsgSITIDGVDI 1294
                  6899*************99864422344444333 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 1.8
                  HHHHTS.TSEEEEEETGGGHHHHH CS
         AAA   52 eakeka.kpsilfiDEidalaksr 74  
                   a++   +p+il++DE+ + +  +
  KKY18202.1 1409 LARAILsRPKILILDEATSAVDLE 1432
                  444444579*******99887766 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0032         2      14      47 ..     573     606 ..     571     612 .. 0.86
   2 ?    1.6   0.0      0.28   1.8e+02      19      50 ..    1249    1280 ..    1247    1281 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0032
      AAA_27  14 ftdrsldfsaeeadlhliyGpNEAGKstalrAis 47 
                 ft r l+++  ++ l +i Gp  +GKs +l+Ai 
  KKY18202.1 573 FTLRDLNLQFPNNALSVISGPTGSGKSLLLNAIL 606
                 666666666679********************85 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.28
      AAA_27   19 ldfsaeeadlhliyGpNEAGKstalrAisdll 50  
                  l+f ae+++   ++G   AGKst+  Ai ++l
  KKY18202.1 1249 LTFTAERNQRIGVVGRTGAGKSTLSLAIFRFL 1280
                  67877777777799**********99997765 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1     0.019        12       3      21 ..     590     608 ..     589     620 .. 0.88
   2 ?    4.6   0.0     0.047        30       1      32 [.    1259    1288 ..    1259    1337 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.019
                 EEEBTTTTHHHHHHHHHTS CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlge 21 
                 + G + sGKS +lna+lge
  KKY18202.1 590 ISGPTGSGKSLLLNAILGE 608
                 669999************8 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.047
                  EEEEEBTTTTHHHHHHHHHTS--S---SSS-- CS
   Dynamin_N    1 iavvGsqSsGKSSvlnaLlgedilprgpnptT 32  
                  i vvG + +GKS++  +L   ++l + ++ +T
  KKY18202.1 1259 IGVVGRTGAGKSTL--SLAIFRFLQIRSGSIT 1288
                  79***********9..5555566666666666 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.43   2.7e+02       3      23 ..     589     609 ..     588     616 .. 0.87
   2 ?    7.7   0.0    0.0047         3       2      48 ..    1259    1307 ..    1258    1311 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.43
                 EEE--TTSSHHHHHHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlell 23 
                 +i+Gp G+GK+ l++ +l ++
  KKY18202.1 589 VISGPTGSGKSLLLNAILGEV 609
                 699***********9998776 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0047
                  EEEE--TTSSHHHHHHHHHHHH.....GGGEEEEEEEEE-------EEE CS
    NTPase_1    2 vfiTGppGvGKtTlvkkvlellkss..gvkvgGfyteevreggrrigFk 48  
                  + + G+ G GK+Tl   + + l+ +   ++++G+  +++r ++ r+  +
  KKY18202.1 1259 IGVVGRTGAGKSTLSLAIFRFLQIRsgSITIDGVDISKIRLHDLRSRLS 1307
                  7899***************9886443379999*9999999887777655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.011       7.3       2      21 ..     587     606 ..     586     611 .. 0.88
   2 ?    0.7   0.0      0.66   4.2e+02       4      18 ..    1260    1274 ..    1257    1283 .. 0.81
   3 ?    2.1   0.1      0.25   1.6e+02      70     139 ..    1400    1467 ..    1375    1475 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.011
                 CEEEEC-TTTCHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqkla 21 
                 l+++ G+ GsGK+ Ll  + 
  KKY18202.1 587 LSVISGPTGSGKSLLLNAIL 606
                 579*************9986 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.66
                  EEEC-TTTCHHHHHH CS
       NACHT    4 ilqGeaGsGKTtLlq 18  
                   + G+ G GK+tL  
  KKY18202.1 1260 GVVGRTGAGKSTLSL 1274
                  589*********965 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.25
                  -CCHHHHCCSCCCEE.....EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCTTS CS
       NACHT   70 sevwavllelperlL.....lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdleeql 139 
                  s++ + ll l++ +L     lilD +  +v+ l+       ++l+++ ir++   ++ l+++ r +++ d  + l
  KKY18202.1 1400 SQGQKQLLCLARAILsrpkiLILDEATSAVD-LET------DQLIQRSIREEFSDTTLLVVAHRLSTVADFDRIL 1467
                  3333336666666669999999999888887.333......79********999999999999988887766655 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.079        50      19      79 ..     689     736 ..     680     743 .. 0.78
   2 ?   -2.4   0.0       9.3     6e+03      17      47 ..     849     880 ..     845     886 .. 0.68
   3 ?    4.0   0.0     0.091        58      62      79 ..    1415    1432 ..    1393    1442 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.079
     SbcCD_C  19 edgkekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDee 79 
                 edg e+e+ ++  +lSGG+k     l+la   +a+ys+a       +++++D+ Fs lD++
  KKY18202.1 689 EDGDETEVGAQGISLSGGQK---WRLTLA---RAMYSRA-------GILVMDDVFSALDAH 736
                 67888888888899999999...566666...5566664.......689999999999986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 9.3
     SbcCD_C  17 rdedgkeke.lsrssgtlSGGekqflaylala 47 
                 ++e+g+ k+ +++ + + SGG    ++ ++l+
  KKY18202.1 849 KREKGRVKTsVYTGYLKASGGWPFWIFLIILF 880
                 345555544599999******88666666665 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.091
     SbcCD_C   62 palrlvfLDEAFsklDee 79  
                  +++++++LDEA s +D e
  KKY18202.1 1415 SRPKILILDEATSAVDLE 1432
                  5799**********9976 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0     0.003       1.9       3      25 ..     587     609 ..     585     633 .. 0.82
   2 ?    1.2   0.1      0.27   1.7e+02       6      25 ..    1261    1280 ..    1257    1291 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.003
     DUF2075   3 vvlVtGvaGtGKtvvllnllael 25 
                 + +++G +G+GK+++l+++l e+
  KKY18202.1 587 LSVISGPTGSGKSLLLNAILGEV 609
                 679*****************998 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.27
     DUF2075    6 VtGvaGtGKtvvllnllael 25  
                  V G++G+GK+ + l+++  l
  KKY18202.1 1261 VVGRTGAGKSTLSLAIFRFL 1280
                  78************999755 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2    0.0022       1.4       3      21 ..     588     606 ..     586     614 .. 0.88
   2 ?    0.5   0.1       0.6   3.8e+02       3      17 ..    1259    1273 ..    1257    1285 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0022
                 EEEEESTTCCHHHHHHHHH CS
        cobW   3 tvltGflGsGKTtLlnhll 21 
                 +v++G+ GsGK+ Lln++l
  KKY18202.1 588 SVISGPTGSGKSLLLNAIL 606
                 79**************998 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.6
                  EEEEESTTCCHHHHH CS
        cobW    3 tvltGflGsGKTtLl 17  
                  ++++G  G+GK+tL 
  KKY18202.1 1259 IGVVGRTGAGKSTLS 1273
                  5799*********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 1.10u 0.37s 00:00:01.47 Elapsed: 00:00:00.57
# Mc/sec: 8032.78
//
Query:       KKY18203.1  [L=214]
Description: putative opsin related protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-30  106.4  16.1      2e-30  106.1  16.1    1.0  1  Bac_rhodopsin  Bacteriorhodopsin-like protein


Domain annotation for each model (and alignments):
>> Bac_rhodopsin  Bacteriorhodopsin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1  16.1   1.1e-34     2e-30      43     212 ..       5     175 ..       2     183 .. 0.92

  Alignments for each domain:
  == domain 1  score: 106.1 bits;  conditional E-value: 1.1e-34
                    HHHHHHHHHHTTTTEEEEEETTEE..EEEETHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH CS
  Bac_rhodopsin  43 iaavaYltmalglGltgveaefeh..rqvfyarYidWllttPllvlvlaelagadrrtllvlvladvvmivgglvgaliestyrwvyftisvaall 136
                    + av+Y++ a+ lG++ ve   ++  rqvfyarYi+W++t P+lvl l++l g + +t+++ ++  +++++  l++a + s y+w++f ++++a++
     KKY18203.1   5 VGAVTYYAQASDLGWSAVEQ-VNQfsRQVFYARYINWAVTFPALVLSLGLLSGISWTTIVLNIFCAWFWVLSYLAAAYTASDYKWGFFGFGTFAYI 99 
                    5689*************999.66679********************************************************************** PP

                    HHHHHHHTHHHHHHTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTSSCHHHHHHHHHHHHHHH..HHHHHHHH CS
  Bac_rhodopsin 137 vvlylllgelaraakslsserrslfntLrnlvvvlwilYpvawllgeeGngiqpdveavvygilDlvt..kvgfglil 212
                    ++++  ++e +++a+ l+      +++L   v +lw+lYpva +l+++Gn i ++ + +++g+lD +    v +g+++
     KKY18203.1 100 ILVMSTINESRESAEHLGIG--RDYLILAGWVNLLWLLYPVAFGLSDGGNIIGVTESFIFFGVLDALLlpVVSVGFLI 175
                    *******************9..889****************************************5441134444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.32s 00:00:00.82 Elapsed: 00:00:00.50
# Mc/sec: 1283.79
//
Query:       KKY18204.1  [L=349]
Description: putative glycoside hydrolase family 71 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-10   39.1   9.4    9.5e-10   38.4   9.4    1.4  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
       0.01   14.9   0.1      0.015   14.4   0.1    1.2  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   9.4   1.1e-13   9.5e-10       2      36 ..      20      54 ..      19      58 .. 0.89

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 1.1e-13
                S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTC CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfyses 36
                aC++C+ +K +Cd+++P+C+nC+ ++++C++   +
  KKY18204.1 20 ACIRCKARKKRCDGEIPKCANCVAHGADCQYAAIR 54
                9*****************************55544 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.7e-06     0.015      24     108 ..     214     297 ..     183     315 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-06
  Fungal_trans  24 t....ssenssksayasplll.lailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektss 108
                        +s++ +++++ s   + ++i+al+++ +  + +e   s  +++     f++ a +++ +++  +++sl ++q+Ll ++++ +   
    KKY18204.1 214 LeaqyASSPLGPADNPSRWAIvNSIIALAMRVKTAPGSEAALSDITHA-----FYQNAVKVT-PELILQDPSLLSIQALLAMAMFAQYIP 297
                   3443655555555555555555*****************966666633.....445666666.*********************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.51
# Mc/sec: 2071.40
//
Query:       KKY18205.1  [L=520]
Description: putative alternative sulfate transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-27   97.0  20.1      1e-27   97.0  20.1    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.14   12.3   0.0       0.63   10.2   0.0    2.1  2  DUF2371   Uncharacterised conserved protein (DUF2371)
       0.18   11.8   3.5        0.7    9.9   0.1    2.8  3  DUF5391   Family of unknown function (DUF5391)
        1.6    8.6   0.0        1.6    8.6   0.0    3.2  3  LapA_dom  Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0  20.1   2.3e-31     1e-27       2     353 .]      51     429 ..      50     429 .. 0.81
   2 ?    2.7   4.5     0.011        47     100     137 ..     390     428 ..     360     477 .. 0.82

  Alignments for each domain:
  == domain 1  score: 97.0 bits;  conditional E-value: 2.3e-31
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                  l++f+  l+r++++ a++  ++ed gi+  +++    + +lg +++ +p   +  r+G+ ++l l l+lf+  +++ +f ++++ ++++ r+l G+++
  KKY18205.1  51 TLGFFCLQLDRGNIANAITDNMMEDVGIDQNQFNVGQQMLSLGIVLFEIPSNMILYRVGPGKWLTLQLFLFGTVSTFQAF-QNSYgTFIATRFLLGMTE 148
                 699*****************999***************************************999999999999777778.88888************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee.... 188
                 ++++p+g+  ++ w++++e ++ + +++ g+++G +   ll+  +++  g      W ++f+i++ +++l++ +   +++ +  +++r++  ++     
  KKY18205.1 149 SGFIPGGLWTLSTWYTRKETAKRVMFFYFGNQFGQASSKLLAYGILHMRGvggkpgWFWLFVIMGSFTILSGFIL-GFFLPDSFKNPRSAFLPRVtvft 246
                 **************************************999999998888899999***************7754.56656666666666666667778 PP

       MFS_1 189 .................kgtgpaplvp.awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsd 269
                                  kg++++ +   a+k+ +++  lw+ +++ l++     ++ t++p++ +  +g++ +l++ ++ +++ ++ +++++ ++++sd
  KKY18205.1 247 erelhilqsrvllddpmKGKKKRRIGLsAFKKAFSRWRLWAHFVITLSNNGPQRAFDTYSPSI-VNSFGFP-ALTSNAMASVGLFLQIPVSFSFSYVSD 343
                 8889888888888888855555555556699999999777555555555557777*******7.*******.566666666666666777********* PP

       MFS_1 270 rlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfv....fpsllalasdlappeeagtasglfntagslggalgp 353
                 ++++r  +++a+l++ l+   +  + +  +   l ++ v+++ ++g++    ++++++la      ee++ a++ + +  +++g+ g+
  KKY18205.1 344 HFNKRGETVIAGLSMHLLGYVFNRIFTEINLRGLRYFGVVWTQTFGTFshplNIAWMSLACTDS--EERALAMAMVIMGANIAGIYGA 429
                 ****888877777775555555555555455555556666666555552233555555555555..******************9885 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.011
       MFS_1 100 galfpagaaliadwfpk.eergraigllsagfslGailg 137
                  ++ p+ +a+++   ++ eer++a++++ +g++++ i g
  KKY18205.1 390 TFSHPLNIAWMSLACTDsEERALAMAMVIMGANIAGIYG 428
                 5777888888888888889***************99877 PP

>> DUF2371  Uncharacterised conserved protein (DUF2371)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         1   4.7e+03      52      66 ..     353     367 ..     351     389 .. 0.83
   2 ?   10.2   0.0   0.00014      0.63      46      87 ..     446     488 ..     442     519 .. 0.57

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1
     DUF2371  52 lvGiamavlgywpkk 66 
                 + G++m +lgy  ++
  KKY18205.1 353 IAGLSMHLLGYVFNR 367
                 6799*******8765 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00014
     DUF2371  46 lGllvllvGiamavlgywpkk.......aklaseekssssstaess.sek 87 
                 +G+ vl+vG+ +av+ +   +       +       + ++++a+ + se+
  KKY18205.1 446 IGIGVLVVGLCLAVVRFVDDRlrrrrsaK-------QVQNESASDQnSEN 488
                 7999*************999965544331.......22222222210111 PP

>> DUF5391  Family of unknown function (DUF5391)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00016       0.7       4      69 ..      38     109 ..      35     131 .. 0.83
   2 ?    1.3   0.4     0.074   3.3e+02      47     113 ..     351     416 ..     320     433 .. 0.64
   3 ?   -1.6   0.0      0.57   2.6e+03      78      95 ..     443     460 ..     437     467 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00016
     DUF5391   4 kkkkssviivtllsavlfcsll....vvtsls..PladtgpnanqfnslgmwksiGiillfylvplllyilg 69 
                  k+k + ii+ ll+  +fc+ l    ++ +++   + d+g + nqfn  + + s+Gi+l+    +++ly +g
  KKY18205.1  38 AKRKLDFIIMPLLTLGFFCLQLdrgnIANAITdnMMEDVGIDQNQFNVGQQMLSLGIVLFEIPSNMILYRVG 109
                 578889999999999999998755544444432158899********************9999999999876 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.074
     DUF5391  47 gmwksiGiillfylvplllyilgikalrfvmai.lcgvGllidlvllavvflslllsdseassllgvi 113
                  ++  + + ll y+ + +   +++++lr+   +   + G +++   +a  ++sl ++dse   l   +
  KKY18205.1 351 TVIAGLSMHLLGYVFNRIFTEINLRGLRYFGVVwTQTFGTFSHPLNIA--WMSLACTDSEERALAMAM 416
                 345667788999999999999999999998554166789999876554..555555555544443332 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.57
     DUF5391  78 ailcgvGllidlvllavv 95 
                  +++g+G+l+    lavv
  KKY18205.1 443 GFSIGIGVLVVGLCLAVV 460
                 688999999999988887 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.54   2.4e+03      29      49 ..     149     169 ..     142     171 .. 0.69
   2 ?   -3.9   3.8       2.8   1.3e+04      25      37 ..     215     227 ..     206     227 .. 0.73
   3 ?    8.6   0.0   0.00036       1.6      25      58 ..     444     478 ..     443     485 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.54
    LapA_dom  29 iGallgwllslwsylrlrrel 49 
                  G++ g+l++l+++   +  +
  KKY18205.1 149 SGFIPGGLWTLSTWYTRKETA 169
                 699999999997766655555 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.8
    LapA_dom  25 vafgiGallgwll 37 
                 ++++ G++lg++l
  KKY18205.1 215 FTILSGFILGFFL 227
                 5678899999875 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00036
    LapA_dom  25 vafgiGa.llgwllslwsylrlrrelrrlkkkikk 58 
                 +++giG+ ++g+ l++++ +  r++ rr  k+++ 
  KKY18205.1 444 FSIGIGVlVVGLCLAVVRFVDDRLRRRRSAKQVQN 478
                 5899***7777777888888677777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       885  (0.0493614); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.49
# Mc/sec: 3179.64
//
Query:       KKY18206.1  [L=278]
Description: putative glycoside hydrolase family 18 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-48  163.6   0.0    1.1e-47  163.3   0.0    1.0  1  Glyco_hydro_18  Glycosyl hydrolases family 18
  ------ inclusion threshold ------
       0.12   12.3   1.0       0.32   11.0   0.5    2.0  2  NOGCT           NOGCT (NUC087) domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.3   0.0   1.2e-51   1.1e-47     105     312 .]      12     252 ..       6     252 .. 0.85

  Alignments for each domain:
  == domain 1  score: 163.3 bits;  conditional E-value: 1.2e-51
                     -SEEEEEES-TTTS............TCHHHHHHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSHHHHHHH..CHHHHHHHHTSEEEEETTTSSS CS
                     xxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 105 fDGiDidweypggn............pedkenytallkelrealdkakategkkllLsaavpasasdlskg..ydlpkiakylDyvnvmtYDfhg 185
                     + G+D+dweypggn            +e+ +ny++ll+++r+al+       +++++saavp+  +d+ ++  + +p+++++lD++nvmtYD+++
      KKY18206.1  12 IQGVDVDWEYPGGNgedykqipnsqkAEEIHNYPLLLSAIRQALG-------PNKIISAAVPGIHRDMLAFtpETVPQLSRTLDFLNVMTYDLMN 99 
                     78************999999999999889*************776.......789************433479********************** PP

                     TTSSBE--SS-SSBTCSSHHHHHHHHHHTT--GGGEEEEEESEEEEEEESSS.SSS......................TSTTTEEEHHHHHHHH. CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx......................xxxxxxxxxxxxxxxx. RF
  Glyco_hydro_18 186 swdnvtghhaplydaslnvdeavkeylkagvpakklvlGvpfygrawalvsg.adn......................tkeegvlsykelkell. 256
                     ++dnvt+hh+ +      + ea++ y ++g pa+k++lG++fy +++ ++ + + +                                       
      KKY18206.1 100 RRDNVTKHHTGV----QLSLEAIDLYERRGFPASKMNLGFAFYIKWFRTDPEfG-EqcsanpigcktvlmedpvtgadL--------------Gq 175
                     ************....99*****9999********************9988730.234444555555555555555552..............03 PP

                     ..................TEEEEEEEEETTTTEEEEEETT..EEEEE-SHHHHHHHH.HHHHHTTESEEEEETGGGS CS
                     ..................xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 257 ..................kkakakrkydskakapyvydge..efvsyDdpksikaka.dyvkakglgGvmiWsldqD 312
                                       +ka +++kyd + +++y++d+e   ++++D+p+++++k+ ++v+ k+lgGv++W l++D
      KKY18206.1 176 agafswhdpvpeelkgsyRKAMKHGKYDITGGGHYYWDSEehLWWTWDTPEAVSKKIpEIVRGKKLGGVFAWGLGED 252
                     333333344444446666********************************************************998 PP

>> NOGCT  NOGCT (NUC087) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.56     5e+03      34      43 ..     182     191 ..     179     193 .. 0.84
   2 ?   11.0   0.5   3.6e-05      0.32      12      44 ..     206     239 ..     194     241 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.56
       NOGCT  34 yDiiPEildG 43 
                 +D +PE l+G
  KKY18206.1 182 HDPVPEELKG 191
                 799**98887 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 3.6e-05
       NOGCT  12 ggagvYsvdlkkk..YllkndewkyDiiPEildGk 44 
                 gg g Y +d  ++  ++ + +e    +iPEi+ Gk
  KKY18206.1 206 GG-GHYYWDSEEHlwWTWDTPEAVSKKIPEIVRGK 239
                 44.9*****98876689*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 1826.75
//
Query:       KKY18207.1  [L=635]
Description: putative polysaccharide deacetylase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-36  125.4   0.1      4e-36  124.7   0.1    1.3  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    3.9e-28   98.3   0.0    6.6e-28   97.5   0.0    1.4  1  adh_short        short chain dehydrogenase
    5.8e-12   45.6   0.0    1.1e-11   44.7   0.0    1.4  1  Polysacc_deac_1  Polysaccharide deacetylase
    5.1e-05   23.0   0.0    0.00011   21.9   0.0    1.5  1  DUF2334          Uncharacterized protein conserved in bacteri
    0.00029   20.4   0.0    0.00073   19.1   0.0    1.7  2  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.011   15.6   0.9      0.094   12.6   0.9    2.2  1  KR               KR domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.7   0.1   1.3e-39     4e-36       1     233 [.      17     263 ..      17     264 .. 0.92

  Alignments for each domain:
  == domain 1  score: 124.7 bits;  conditional E-value: 1.3e-39
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.E.EE--TTSHHHHHHHHHHHHHHH.SSEEEEEE-----EG.CSS-GGGH-HH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.v.lecDVtdeeqvealveevvekf.gklDilvnnagiapk.lkgpfletsre 93 
                   Gaa gIG  ++k++ ++G+ v   d++        ++ ++++++ + +++D ++e++v++++++++++f +   il+ nagi+++  + p+ e++ +
    KKY18207.1  17 GAAGGIGTVAVKEFLSHGCLVTGLDIKPTP-----DIPASIPSNyFyVQADLRKEAEVAQAFRTATQHFnKPPQILIANAGITNEsAHPPIWEIDVD 108
                   9**************************998.....899999999547**********************7778************************ PP

                   HHHHHHHHHTHHHHHHHHHHHHHCTSC..........CEEEEEEEGGGTSBSTTTTHHHHHHHHHH.HHHHHHHHHHGG..GTEEEEEEEE--BHCT CS
  adh_short_C2  94 efdraldvnlyslfllakaalplmkeg..........gsivnlssvgaervvpnynaygaaKaale.altrylAvelgp..kgiRvNavspgpikTl 177
                    +d++ +vn++++fl++k++++ +k++           +iv + s  ++ + ++++ y+  Ka+l+ +l+  + +el +  ++ R+Nav+pg+++T+
    KKY18207.1 109 VWDNTAAVNVRGTFLTIKHFMRSVKQWqdenakevenLAIVVTGSETGKFGQEGHAEYASGKAGLQyGLVMGVKNELVRinDKARINAVAPGWVNTP 205
                   **********************66655566777777778**************************7689********98889*************** PP

                   GGGG.STTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT.--SEEEEESTTG CS
  adh_short_C2 178 aasg.ikgfdelleelearaplgrlgtpeevaeaalfLasdeasy.itGqtlvvDgGl 233
                   + +g +++ +e+ +e++a   l+++++pe+v +a++fLas++a++ i+Gq+l vDgG+
    KKY18207.1 206 LIDGrLDDPKEMWAEAQATVSLKKIAEPEDVSRAMAFLASHRAAGhISGQVLSVDGGM 263
                   *6662666889*****************************977655***********8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   2.2e-31   6.6e-28       2     187 ..      12     207 ..      11     215 .. 0.93

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 2.2e-31
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH.SSESEEEE---S...S--SSGGGC CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl.gkldvLvnNAGi...tgsgpfsel 96 
                 +vlvtGa++GIG   +ke+++ G+ v+ +d+++ +   + +++ ++   ++++q+D+++++ev +++++a +++ ++  +L++NAGi   +   p+ e+
  KKY18207.1  12 HVLVTGAAGGIGTVAVKEFLSHGCLVTGLDIKPTPD--IPASIPSN---YFYVQADLRKEAEVAQAFRTATQHFnKPPQILIANAGItneSAHPPIWEI 105
                 69*************************999997765..99999986...*************************8899*********888788899*** PP

                 SHHHHHHHHHHHTHHHHHHHHHHHHHHH........HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHH.HHHHHHHHHHGGGT..EEEEEEEESSBSS CS
   adh_short  97 seeewervievNltgvflltravlpaml........kqssGrIvnvsSvagkvpvagvaaYsAsKaava.gltrslakelaptg..irvnavaPGlvdT 184
                 + + w+++ +vN+ g+fl+++++++  +        + ++ +Iv ++S +gk + +g a Y++ Ka+++ gl++ +++el + +   r+navaPG v+T
  KKY18207.1 106 DVDVWDNTAAVNVRGTFLTIKHFMRSVKqwqdenakEVENLAIVVTGSETGKFGQEGHAEYASGKAGLQyGLVMGVKNELVRINdkARINAVAPGWVNT 204
                 **************************8899888776667789**************************879*********998888************* PP

                 HHH CS
   adh_short 185 dma 187
                 ++ 
  KKY18207.1 205 PLI 207
                 986 PP

>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   3.6e-15   1.1e-11      18     123 ..     346     455 ..     307     456 .. 0.85

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 3.6e-15
                      CSCHHHHHHHHHHCT-..-EEEEE-HHHHCH-HHHHHHHHHTTEEEEE--SS--EGGGSHHHHHHHHHHHHHHHHHHH..HS----EEE-GGGE CS
  Polysacc_deac_1  18 rdntteilpvLkkykv..katffvigglvedypdevremaasGveignHtinhsnlkrlseeevrreierakdalrka..lgreprlfryPygs 107
                      r +++++l++++ky++  ++t+f+ g+ +e+ p+e +++++sG ei+ H+++h+   ++ + ++r+ +e++ +   +    +r+p+ +r+P  +
       KKY18207.1 346 RVGVPRLLKLFRKYNIssNITWFLPGHSIESFPKETEAIVKSGAEIALHGYSHEGAYQMAPGQERDVLEKCIELATALhpEKRPPVGYRAPLYQ 439
                      7789************777*****************************************************998888433347777******* PP

                      E-HHHHHHHHHTT.EE CS
  Polysacc_deac_1 108 asatvlevarelgfay 123
                      + +t+++ +++++f y
       KKY18207.1 440 IRETTVALLKQHNFLY 455
                      ************9977 PP

>> DUF2334  Uncharacterized protein conserved in bacteria (DUF2334)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.7e-08   0.00011      63     165 ..     383     474 ..     372     502 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 3.7e-08
     DUF2334  63 ylqakGgeialHGYtHqygtvksevsgegfeflseseakeriekGieilkklg...ikpkgFeaPhyaaseetykalkkyfsiiyer.ykeykgqkegl 157
                  + + G+eialHGY+H+             ++    + ++ +ek ie++++l     +p+g+ aP y++ e+t   lk + +++y++ ++  +  ++  
  KKY18207.1 383 AIVKSGAEIALHGYSHEGAY----------QM-APGQERDVLEKCIELATALHpekRPPVGYRAPLYQIRETTVALLK-QHNFLYDSsMN-AH--DSLP 466
                 56789***********9983..........22.355556778888888888774436*************99999999.66778877433.33..4555 PP

     DUF2334 158 tyipenlg 165
                 +++pe+l+
  KKY18207.1 467 YFLPEPLD 474
                 67888776 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.4e-07   0.00073       1      62 [.      13      75 ..      13      86 .. 0.91
   2 ?   -4.1   0.0       2.9   8.7e+03     215     228 ..     275     288 ..     275     292 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.4e-07
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.EEEE--TT-HHHHHHHHHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.elveldltdrsalerlfke 62
                +lVtGa+G iG+  vk++l++g  v+gld +++ +  a+++     v++dl+++++++++f++
  KKY18207.1 13 VLVTGAAGGIGTVAVKEFLSHGCLVTGLDIKPTPDIPASIPSNyFYVQADLRKEAEVAQAFRT 75
                79*****************************9988888888778999************9985 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 2.9
                 HHHHHHHHHHHHHH CS
   Epimerase 215 veDvaeaillvleh 228
                 v+D a+ai++++++
  KKY18207.1 275 VKDQAKAIYAAIDK 288
                 79********9998 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.9   3.2e-05     0.094       3     153 ..      13     170 ..      12     175 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.2e-05
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS.S---EEEE--------...-T CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee.ppikGvihaAgvlrdk...ll 97 
                 +l+tG++Gg+G++ ++  +++g    ++++ + ++++d  a i        +  +v+aD+ ++++v+++++++++++ +p +  i  Ag+++++   ++
  KKY18207.1  13 VLVTGAAGGIGTVAVKEFLSHGC---LVTGLDIKPTPDIPASIP------SNYFYVQADLRKEAEVAQAFRTATQHFnKPPQILIANAGITNESahpPI 102
                 69*******************95...788888778888775555......68899********************999899999999**9986533379 PP

                 TT--HHHHHHHHTTTTHHHHH.HHHHTTT.........S--S..EEEEEEEHHHHH--TT-HHHHHHH CS
          KR  98 eemtaedleqvlapKvkGawn.Lhelled.........esld..ffvlfSSiagllgsagqanYaaaN 153
                  e + + +++  a  v+G+   +++++++         ++++   +v++ S  g +g+ g+a+Ya++ 
  KKY18207.1 103 WEIDVDVWDNTAAVNVRGTFLtIKHFMRSvkqwqdenaKEVEnlAIVVTGSETGKFGQEGHAEYASGK 170
                 9*****************96414444443555766666455522467888899999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 4017.78
//
Query:       KKY18208.1  [L=536]
Description: putative choline transport [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-51  175.9  53.7    1.5e-51  175.6  53.7    1.0  1  AA_permease_2   Amino acid permease
    6.2e-22   77.8  43.9    8.1e-22   77.4  43.9    1.0  1  AA_permease     Amino acid permease
  ------ inclusion threshold ------
       0.16   10.6   8.1        0.1   11.3   6.3    1.6  1  Ndc1_Nup        Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.6  53.7   2.4e-55   1.5e-51       3     424 ..      41     486 ..      39     488 .. 0.87

  Alignments for each domain:
  == domain 1  score: 175.6 bits;  conditional E-value: 2.4e-55
  AA_permease_2   3 llsaf..alvigsv...igsgifvknlaasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaa....fgkkvaflsawfnwfayv 89 
                    l++++  ++++gs+   +g  i+v+  +++ggp  +++ +i+v ++ ++v++++aEl+sa+p+sgG+y++++ +    +g++v+f+++++n++a++
     KKY18208.1  41 LWTLAgvGITVGSTwpaLGGSILVA--IYNGGPPGVIYELITVSLFYWIVAACIAELASAIPSSGGVYHWASVTpgkkWGRVVGFFAGYWNCLAWI 134
                    5555511456666688666777777..***********999999999**********999***********9996666677777************ PP

  AA_permease_2  90 pvlasilsvaasyllna...lgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl...stet 179
                    ++ as++s+++++++++   ++pd++++ w++++ +i+i+++ ++  ++  k + + ++ ++ + +++++i+++++++  + ++g + +    + +
     KKY18208.1 135 FGSASMSSIGGNMCVQMyaaMHPDFVPEAWHVFVAYIFITWIACATVCLFNKAMPYTNSLGVFFILTGVFITIVVVAVMPG-RDGRPGHasdAFVW 229
                    **************777333567*********************************9988888888777666665555555.55555444446777 PP

  AA_permease_2 180 dtffpn.gwp.g..vllgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavgg 269
                    + ++++ g p g  +++g+l  ++s++  +++++ +ee   + ++vp+ai + ++i +v  + + ia+l+ ++d     +s ++ +a+++ +a+g+
     KKY18208.1 230 KEWTADiGYPnGfvFVAGMLNGAYSVGVPDCVSHLAEEipFPSRNVPIAIALQMIIGFVTAFAYLIAVLYSINDYDALFSSAFP-IAEIYHQATGS 324
                    77888875554334589*********************44446**********************************9999976.*********** PP

  AA_permease_2 270 kvvaiivvilialsllgaintavigssrvlealardgvlP..rffakvn.kfgspiraiiltaivslillllfllassaaynfllsvsslgliisy 362
                    +++++ + +li++++++  ++ +i+s r+l+ lard++ P  + +++v+   + p++a+ + + +++il+ ++ + s++a+n+ +  +++++ +sy
     KKY18208.1 325 SAGTVGLLFLIFICIFLTTIGTYITSGRTLWTLARDRATPfpSTLNRVHpTLNMPLNATLVCCAIVTILGAIYVG-STTAFNAFVGSFVVMSSSSY 419
                    *************************************************99*****************9977765.69****************** PP

  AA_permease_2 363 llliigalilrkkrphlkrpgk.....ilvaiigalfllfllvalffppkgpatqssliytiiltva 424
                    +++i+  l+ r+k+ + + +++      l+++i++ + ++ +v+ +fp + p+  +s++y+ +++++
     KKY18208.1 420 TAAILPHLLTRRKNIIPGPFWMkgwigFLMNFIACAYMIVWIVIYCFPYALPTDAQSMNYASLIVGG 486
                    *************99998877656433489999999999999*******************777665 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4  43.9   1.4e-25   8.1e-22      18     468 ..      61     501 ..      47     507 .. 0.80

  Alignments for each domain:
  == domain 1  score: 77.4 bits;  conditional E-value: 1.4e-25
  AA_permease  18 glgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGln....ylfswitvlal.eltaasiliqfwel.vtd 109
                  ++ v++ ++Gp g++  ++ + +++++v+ +++e+a+++p+sgg y++as + g+++G v+G+      ++ wi++ a    ++ ++++q+     +d
   KKY18208.1  61 SILVAIYNGGPPGVIYELITVSLFYWIVAACIAELASAIPSSGGVYHWASVTPGKKWGRVVGFFagywNCLAWIFGSASmSSIGGNMCVQMYAAmHPD 158
                  67899*********************************************777777666666665522567788887651445556666665442455 PP

  AA_permease 110 lpkawvt......gavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfa.keeegafkn 200
                      +++      + +++++  +++l++  +    ++ +++i+   +i  ++v +++  +g+p ++ + +f+++++           + ++++ +   
   KKY18208.1 159 FV-PEAWhvfvayIFITWIACATVCLFNKAMPYTNSLGVFFILTGVFITIVVVAVMPGRDGRPGHA-SDAFVWKEW-----------TaDIGYPNGFV 243
                  44.555586888888888888888888888877778889999999999999999999999999999.444444444...........44456666689 PP

  AA_permease 201 fisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplinavilt 298
                  f++++   + +      v  +a+E+  P++++P+ai   +  i+ f + +++li +l + nd + l +sa +  + +i+ + +g+s+  + + ++i++
   KKY18208.1 244 FVAGMLNGAYSVGVPDCVSHLAEEIPFPSRNVPIAIALQM--IIGFVTAFAYLIAVLYSINDYDALFSSAFP--IAEIYHQATGSSAGTVGLLFLIFI 337
                  999999******************************6655..566778999999999999999999999977..************************ PP

  AA_permease 299 aalssansslysasRvlyslakdglaP...kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfRka 393
                   ++ + ++  +++ R+l++la+d++ P   +  +++   + Pl+a l++++i+ ++    +++++ +++fn ++ +  ++  + ++++il +l  R++
   KKY18208.1 338 CIFLTTIGTYITSGRTLWTLARDRATPfpsTLNRVHPTLNMPLNATLVCCAIVTILG---AIYVGSTTAFNAFVGSFVVMSSSSYTAAILPHLLTRRK 432
                  ***************************997777788899************999988...66777779*************************88887 PP

  AA_permease 394 lkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvkl 468
                      ++     +f + + + ++++ +a   +i+ i+ ++ + +++++ +++++as +    +vl+ l  ++g+ l
   KKY18208.1 433 ----NIIP--GPFWMKGWIGFLMNFIACAYMIVWIVIYCFPYALPTDAQSMNYASLIVGGFTVLVALWWFFGGPL 501
                  ....4444..45555555555555555555555555555556666999999999999999999988888887766 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   6.3   1.7e-05       0.1     139     265 ..     286     408 ..     281     435 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.7e-05
    Ndc1_Nup 139 glvlalvy..sllhllfdrdrlsfkssfpivqpskyllkrlpsilkkslilslvlllvspiiyylllrsfiwslalillrlfl.nlprsaapppldslp 234
                 g+v a++y  ++l+ ++d+d l f s+fpi + +++++ +   +++   +l+++++++++i  y+   +++w+la   + +f  +l+r   ++p+  +p
  KKY18208.1 286 GFVTAFAYliAVLYSINDYDAL-FSSAFPIAEIYHQATGSSAGTVGLL-FLIFICIFLTTIGTYITSGRTLWTLARDRATPFPsTLNR---VHPTLNMP 379
                 44444444449999********.**************99966666555.55666666777777999*******999999999655555...77766777 PP

    Ndc1_Nup 235 fnlsLllrtlllgflllllwelanllFdvyl 265
                 +n +L++      ++l  +   + ++F++++
  KKY18208.1 380 LNATLVCC--AIVTILGAIYVGSTTAFNAFV 408
                 77776643..344444444444455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1009  (0.0562775); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.50
# Mc/sec: 3225.61
//
Query:       KKY18209.1  [L=674]
Description: putative c6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-07   30.0   0.3    9.6e-06   24.8   0.0    2.3  2  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   5.3e-10   9.6e-06     122     193 ..      53     120 ..      52     126 .. 0.86
   2 !    2.7   0.2     0.003        53       7      66 ..     205     295 ..     201     352 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 5.3e-10
  Fungal_trans 122 rlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlw 193
                   +l+++++ +++++ v    + ++ ++ + +r  +++a+F+lD+ +++ +Grp++l+d +i++++P  +dd+ 
    KKY18209.1  53 QLRKEMRSGGDQEIVT---IEDRRAN-ERERIDTFYAVFFLDRVVSSGTGRPVTLRDKDIEISFPFRSDDES 120
                   699999********99...4555555.5555678*******************99**********9999875 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.003
  Fungal_trans   7 nfhpqfpilhkpsflpkt...............................ssenssksayaspllllailalGalfsesetkesnssltses 66 
                   +fh ++ +lh+p++++++                               +   + ks + +p+    i++ ++ f+ +++++s+s++++++
    KKY18209.1 205 WFHTLIVLLHQPTLFHSFggniqellqlfpdsrelsmssaktiadilafAELIDAKSFIGNPFTTQPIYIAACAFLAEIAHYSSSPSSRDV 295
                   6899999******999998888888888888877777555555555555555555555555555577777777777777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1039  (0.0579508); expected 358.6 (0.02)
Passed bias filter:                      668  (0.0372581); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.49
# Mc/sec: 4140.82
//
Query:       KKY18210.1  [L=478]
Description: putative carboxypeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.4e-101  340.9   7.4   1.7e-101  340.7   7.4    1.0  1  Peptidase_S10  Serine carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.7   7.4  9.6e-106  1.7e-101       5     418 ..      64     471 ..      60     472 .. 0.89

  Alignments for each domain:
  == domain 1  score: 340.7 bits;  conditional E-value: 9.6e-106
                    ST-SSEEEEEEEECSTTTTEEEEEEEEE-SSGTTTS-EEEEE--TTTB-THHHHHHTTSSEEEETTTTSEEEE-TT-GGGCSEEEEE--STTSTT- CS
  Peptidase_S10   5 etvnfkqysGYldveeeedkslFYwfveseknpeedplvlWLnGGPGCsSldGlleElGPfrvnkdstkkleenpysWnkvanvlfldqPvGvGFS 100
                    +t+ ++qysGYl+v   +d ++++wf+e++++p ++pl  W+nGGPGCsS++Gl++E+GP+++  d+++++ +n+ysWn  an+l++dqP+GvGFS
     KKY18210.1  64 TTPGVTQYSGYLSVG--TDMNMWFWFFEARNSPPTAPLATWFNGGPGCSSMIGLFQENGPCHFI-DGSSTPSLNEYSWNTYANMLYIDQPIGVGFS 156
                    56889**********..99*********************************************.778**************************** PP

                    EETTSSGS--SHHHHHHHHHHHHHHHHHHSTCGTTSEEEEEEETTHHHHHHHHHHHHHTHCCH--S.....STSEEEEEEEESE-SBHHHHHCCHH CS
  Peptidase_S10 101 ysntksdvktddeevaedlyefLkkffekfpeyksrdfyitGESYaGhyvPalakeilkknkkekk.....kkinLkGlligNglideaeqvnsyv 191
                    y +++ +   ++ ++a  ++++L+ f+++fpey++rdf i +ESY+Ghy P +a+ + ++n + k      ++inL +l i Ng+ d++ q+++y+
     KKY18210.1 157 YGTDDVT---STVTAAPYVWKLLQAFYTQFPEYENRDFGIFTESYGGHYGPEFASYFEQQNAAIKAgsasgENINLVALGINNGWFDPELQYQAYI 249
                    ***9877...9**************************************************9998899999************************* PP

                    HHHH...HTTSSHHHHHHHHHHHHEETHHHHHHHHHHHHHHHHHHHHHHHHHCHCEETTETTSEETTSSEEHHHCTTCCCCTTTTTCHHHHHHHHT CS
  Peptidase_S10 192 efay...ehgliseeeyeslkkacekkeeleqesekcanllekaskvavekenkglnvynileeccklkaelkksstdaqggedpydesyvekyln 284
                    e++y   +++li+e++y+s+ ++ +  +++e++ ekc +l  + s+++ + +++++n  +i  +    + +++ ++++  +++dp  ++ + +yl+
     KKY18210.1 250 EYSYnnsYEQLIDESDYNSYMSTYK--SKCEPALEKCTSLTGSNSACV-SAQTTCYN--DIEGPL-AESGDFNVYDVR-ASSNDPNPPETYATYLQ 338
                    *7772225789********998885..569999999999999999884.43333333..333333.334445555444.44577888888899*** PP

                    SHHHHHHTT--TTSSS--SB-HHH...HHHCTCCC-SBCHHHHHHHHHTT-EEEEEEETT-STT-HHHHHHHHHHTECTTECCSCCCEEEETTTCE CS
  Peptidase_S10 285 kkeVrkalhvnasvkkweecndsv...feqleddisksveeileellesglrvliynGdvDlicnvlgteawikklelsgkkefrpwevspkkeng 377
                    +++V +a++++    +++ec +     f+ ++dd+ +s+ + l+ +++sg++v++++Gd+D icnv g ea+ +++ +s ++ f+++  +p ++ng
     KKY18210.1 339 NSSVTTAIGAK---STYQECPNGPynkFSRTGDDS-RSLLSTLSSVVQSGIQVTLWAGDADWICNVDGVEAVANSVSYSESSTFQAQALQPYTVNG 430
                    *********74...79****996656566666666.9*********************************************************** PP

                    SEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHHHHHHT CS
  Peptidase_S10 378 qvaGyvkeyenltfltvkgaGHmvPedkpeealqllerfis 418
                    + +G +k+ +n+ +++v++aGH+vP+++pe alq++++++s
     KKY18210.1 431 KQGGTFKTAGNFGLVRVFEAGHEVPYYQPELALQVFTQTLS 471
                    *************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3401.19
//
Query:       KKY18211.1  [L=120]
Description: hypothetical protein UCRPC4_g05056 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-13   49.1  19.8      1e-12   48.7  19.8    1.2  1  RCR       Chitin synthesis regulation, resistance to Congo re


Domain annotation for each model (and alignments):
>> RCR  Chitin synthesis regulation, resistance to Congo red
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7  19.8   5.8e-17     1e-12      20     119 .]      14     112 ..      11     112 .. 0.75

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 5.8e-17
         RCR  20 lrvakrRrrrGlqplygtgWlvs...apppPsYgqsqqqynqaes.ltsatvptytpnaneedaGyydqeGkfhe...........lqqPqqayqrees 103
                 +++a+rRrr+Glqp++gtgW+++   ++ p +Y+++      +++ + +  +p+ytp+      Gyy+  G+ +            lqqP++ y+    
  KKY18211.1  14 CLSARRRRRSGLQPYRGTGWVGRtpfGHGPAQYNPN-----YNQQaQYNPPPPQYTPQ-----GGYYGGAGQNQGyfgggqqngveLQQPSNVYRG--- 99 
                 459******************554443444455544.....333334577889*****.....999996665555777788888889999999975... PP

         RCR 104 aeeseaeyqpPagppP 119
                     e+ y+pPagppP
  KKY18211.1 100 ---GEPVYEPPAGPPP 112
                 ...3899********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 782.01
//
Query:       KKY18318.1  [L=307]
Description: putative alanine racemase family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-17   63.4   0.0    3.6e-17   62.8   0.0    1.3  1  Ala_racemase_N  Alanine racemase, N-terminal domain


Domain annotation for each model (and alignments):
>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0     2e-21   3.6e-17      48     219 .]      91     300 ..      80     300 .. 0.77

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 2e-21
                     ESEEEESSHHHHHHHHHTTS.CSEEEEESCSTGGGHHHHHH....TTEEEEESSHHHHHHHHHHHHH..............TTS-EEEEEEBESS CS
  Ala_racemase_N  48 adgfgvatleEalelreagi.tapilvlegfspeelaalae....ydltvtvdsleqlealaaaare..............agkplrvhlkidtg 123
                     a +fg+++ +E+le  +    t ++  ++g ++++  ala+       +  vd+ +++  l++ + +              ++  l+v+++i+t+
      KKY18318.1  91 AVHFGENYQQELLEKSKILPrTIRWHFIGGLQSNKCVALARdvrgLWAVESVDTTKKASLLDKGKGDrkaklveansgdndEEDLLNVFVQINTS 185
                     67899999999997776666666777778855555555555565447888888999999998888779999*******9999999*********9 PP

                     SS..SSSBSC.HHH....HHHHHHHHH.TTTEEEEEEE-S-SSTTSTS..HHHHH.HHHHHHHHHHHHHHT......T.GGGSEEEEESHHHHHH CS
  Ala_racemase_N 124 mg..RlGftp.eel....eellealaa.lpglrleglmtHfasadepd..eetea.qlarfeealeeleka......g.lrppvvslanSaaill 200
                     ++  ++G+tp +e     +el+e + + +p+lrl+g+mt+ a a +++  +ete+ ++ ++++a+++le++      g  r   +s+++S+++ +
      KKY18318.1 186 GEesKSGVTPpSEEnreaKELCEFILHkCPNLRLRGVMTIGAIARSKAttPETENeDFLTLKKARDTLEEQlglkafGdSRRLELSMGMSSDFEA 280
                     999****9998655222244444333359***************988888666666***********9665222222445667************ PP

                     SGGG.TTEEEESGGGGT-SS CS
  Ala_racemase_N 201 aaah.fdmvRpGialyGlsp 219
                     a+ + +d+vR+G+ ++G++p
      KKY18318.1 281 AIRQgSDEVRVGTTIFGDRP 300
                     *8456*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 1900.99
//
Query:       KKY18319.1  [L=935]
Description: putative ap-2 adaptor complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.2e-126  423.4   6.0   1.6e-126  423.0   6.0    1.0  1  Adaptin_N        Adaptin N terminal region
    1.6e-38  131.3   0.0    3.9e-38  130.1   0.0    1.7  1  Alpha_adaptin_C  Alpha adaptin AP2, C-terminal domain
    6.7e-18   65.0   0.0    1.3e-17   64.1   0.0    1.5  1  Alpha_adaptinC2  Adaptin C-terminal domain
    6.2e-05   23.1   0.7     0.0016   18.5   0.0    2.7  2  Cnd1             non-SMC mitotic condensation complex subunit


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  423.0   6.0  3.5e-130  1.6e-126       1     520 [.      20     570 ..      20     573 .. 0.96

  Alignments for each domain:
  == domain 1  score: 423.0 bits;  conditional E-value: 3.5e-130
                 XHHHCCHHHHHHCCSSS....-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCCSSSHHH CS
   Adaptin_N   1 eekriqqelaeilnsnk....dddekkkeavkkliylialGedvsflffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlkdpnqli 95 
                 eekri++ela+i++++k    d+++kkk +v+kl+y++++G++v+f++ e v+l++ +++++K+++Yl+++l+++e+++l+ Lv+ns++kDl d n+l 
  KKY18319.1  20 EEKRINKELANIRQKFKggnlDGYQKKK-YVCKLLYIYIQGYNVDFGHLEAVNLISANKYSEKQIGYLAVTLFLHEQHELLHLVVNSIRKDLLDHNELN 117
                 689*****************88888888.********************************************************************** PP

                 HHHHHHHHCCC--CCCHHHHHHHHHHHHT-SSH..HHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH.HCCCCCCCHHHH CS
   Adaptin_N  96 rglALrvLssirvpelaedlapaikkllkdrsp..yvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleei.kkndrlllkllp 191
                  +lAL+++++++ +e+ e+l  ++ +ll ++++  +v+kkAal++l+ly+k+p +++++++e+i++l++d d+gv+l++++l   + + n+++++    
  KKY18319.1 118 NCLALHAVANVGGREMGEALSADVHRLLISPTSkaFVKKKAALTLLRLYRKYPAIVQQEWAERIISLMDDPDMGVTLSVTSLVMALaQDNPDAYKGSYI 216
                 *****************************999999*********************888***************************9999999998888 PP

                 HHHCCHHHHH............HCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCG.............CSSCHHHHHHHHHCCHCCCCSTHH CS
   Adaptin_N 192 klvrrLcnll............teldpwlqvkiiklltrlarqepeerskkellesllnllq.............ssnnaVlletvnlivelapkneli 265
                 k ++rL++++            +++ pw qvk++kll+ + ++e+     +e++++ l+ +              +++naVl+e++nl+++l+ + +l+
  KKY18319.1 217 KAAQRLKRIVvegdispdylyyKVPCPWVQVKFLKLLQYYRPSEDTHV--REIIRESLQAIMtiamempknvqqnNAQNAVLFEAINLLIHLDTEHNLM 313
                 9999**************************************998888..6777766666667999********************************* PP

                 HCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHX..XTTTT.TTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHHHHHHHH CS
   Adaptin_N 266 vlavnaLvrllsskdenlryvaLrtllkivkke..pkavq.hldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevadedfksklv 361
                 +++ ++L+++++s+++n+ry+ L+++ + + +    + ++ h++++i +l+ d+d+s+r+k ldll+ ++d +N+  iv+eL+ky+ ++ad  +++++v
  KKY18319.1 314 MQISSKLGKFIQSRETNVRYLGLEAMTHFAARAetLDPIKrHQNIIIGSLR-DRDISVRRKGLDLLYSMCDTTNAVPIVNELLKYL-QTADFAIREEMV 410
                 *****************************999866678899**********.**********************************.999999****** PP

                 HHHHHHHHHSCCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCG.XXSHHHHHHHHHHHHHTTTTXTT.....HHHHHH CS
   Adaptin_N 362 kaIgrlaekfatdaewvldvllellslsgesvkdeivevirdliqkvpelheeiiekLaellek.ieseearaaaiWllGeygelvsnte..sasdllr 457
                  ++++l+ek+atda+w++d+ l+ll  +g++v+de+++++ +++++++ l+ +++++++e+++   ++ ++++   ++lGe+g l+ ++   s+ +++ 
  KKY18319.1 411 LKVAILTEKYATDAQWYIDISLKLLAMAGDHVSDEVWQRVVQIVTNNEPLQTYAAQNILEYIKPdACHDTLVKIGGYILGEFGHLIADNPgcSPIEQFM 509
                 **************************************************************999**********************96557889**** PP

                 CTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THXHHHHHHHHHHHXXSHHHHHHHHHHHHHH CS
   Adaptin_N 458 slaekfvlesekvklqiltalvKlyltspdketqekliqlvlslatssdlevrdRaveylqll 520
                  l++k+ + se +++ il+++vK+ +++p  e++++l+q+++ +++s d e+++Ra+eyl+l 
  KKY18319.1 510 ALQSKMLSSSESTRALILSTFVKFVNLFP--EIKPQLLQVFQVYSHSPDSELQQRACEYLTLS 570
                 *****************************..7999*************************986 PP

>> Alpha_adaptin_C  Alpha adaptin AP2, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.1   0.0   8.6e-42   3.9e-38       1     113 []     815     924 ..     815     924 .. 0.97

  Alignments for each domain:
  == domain 1  score: 130.1 bits;  conditional E-value: 8.6e-42
  Alpha_adaptin_C   1 FleptelssedFfkrWkqlggapreaqkifklkaaekeideetvrkvleGfrlavlenvdpnpenivgagvlhtsesgkvgcLlrlepNkqakm 94 
                      ++ep+els+edFfkrW+q+gg   eaq++f++  ++ ++de+ ++k+++ f++++l+nvdpnp+n+vg++v++++ +gk+g+LlrlepN +++m
       KKY18319.1 815 YVEPSELSAEDFFKRWRQIGGGALEAQSTFAV--KNTRVDEPWTHKMITNFKWKILSNVDPNPKNFVGCAVYQVE-GGKMGILLRLEPNWEQRM 905
                      89*****************************5..699**************************************.****************** PP

  Alpha_adaptin_C  95 vrltiRatkeavpktllkl 113
                      +r tiRat+e++p +llk+
       KKY18319.1 906 FRATIRATQETIPGILLKM 924
                      **************99986 PP

>> Alpha_adaptinC2  Adaptin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   2.9e-21   1.3e-17       2     111 .]     705     809 ..     704     809 .. 0.94

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 2.9e-21
                      EEEEEEETTEEEEEEEEETTSTTEEEEEEEEEE-SSS-EEEEEEEEEEBTTCEEEEEEES-S-B-TTCEEEEEEEEEEESCTTS-EEEEEEEEE CS
  Alpha_adaptinC2   2 evvlyekddlqIgfkfekperpgqiritlsftNkssqpisnfsfqaavpkslklqlqppsstvlppnpggqitqvllienpskkplrmrlrisy 95 
                      e+vl+e+ ++q+g+++e+  r ++++i+l+ftNks+  i +f++++++++s  l++   s  + +  +  q +q++ +++ +++++++++risy
       KKY18319.1 705 EGVLFEDAQIQVGLRSEY--RAHMGVIKLYFTNKSPFSIGSFTTTLDNKSSSALKIDTKSLPESHIAAESQSQQTIVFTATGAFSESPTIRISY 796
                      79****************..*********************************************889************************** PP

                      ECTCEEEEEEEEEEE- CS
  Alpha_adaptinC2  96 kvgqaikeqidvlkfp 111
                      +   a++ q  +l +p
       KKY18319.1 797 L---AGALQAYTLRLP 809
                      *...777777766665 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.6e-07    0.0016      34     139 ..     151     269 ..     118     281 .. 0.79
   2 ?    1.9   0.3     0.046   2.1e+02      29     130 ..     362     475 ..     306     484 .. 0.61

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.6e-07
        Cnd1  34 dpyVRktaaivvakLilndmvkekg.flselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalne............csewgqiti 119
                 ++ V+k aa+++++L+++   ++++   +++ +l++D++  V  ++ ++ + +++ +++a   + ++ +++l+    e               w q++ 
  KKY18319.1 151 KAFVKKKAALTLLRLYRKYPAIVQQeWAERIISLMDDPDMGVTLSVTSLVMALAQDNPDAYKGSYIKAAQRLKRIVVEgdispdylyykvPCPWVQVKF 249
                 568************99996666655*******************************999999**********94444566666777777789****** PP

        Cnd1 120 lefLlsyipkdkqeaeslve 139
                 l++L  y p+++ +  +++ 
  KKY18319.1 250 LKLLQYYRPSEDTHVREIIR 269
                 ***********998888875 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.046
        Cnd1  29 rLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteisek.senaiynllpdiisklsd...............alnec 111
                 +L+D+d  VR+  + ++  + +  +     +++el+k l+  +  +++  ++    + ek +  +  +  +di  kl++               ++ + 
  KKY18319.1 362 SLRDRDISVRRKGLDLLYSMCD--TTNAVPIVNELLKYLQTADFAIREEMVLKVAILTEKyA--TDAQWYIDISLKLLAmagdhvsdevwqrvvQIVTN 456
                 6788888888877776666643..33334566777777777777777777666666666632..22233344444444322222222222222222224 PP

        Cnd1 112 sewgqitilefLlsyipkd 130
                 +e  q++  + +l+yi++d
  KKY18319.1 457 NEPLQTYAAQNILEYIKPD 475
                 4555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (935 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.48
# Mc/sec: 5901.78
//
Query:       KKY18320.1  [L=1157]
Description: putative dead deah box [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-28  100.1   0.0    2.2e-28   99.2   0.0    1.4  1  DEAD        DEAD/DEAH box helicase
    6.3e-21   74.9   0.9    1.8e-20   73.5   0.9    1.9  1  DUF1998     Domain of unknown function (DUF1998)
    2.2e-11   44.1   0.1    7.4e-11   42.4   0.0    1.9  2  Helicase_C  Helicase conserved C-terminal domain
    2.5e-07   30.9   0.0    4.5e-07   30.0   0.0    1.4  1  ResIII      Type III restriction enzyme, res subunit
    0.00014   22.2   0.0    0.00025   21.4   0.0    1.4  1  CDT1        DNA replication factor CDT1 like


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.0   6.2e-32   2.2e-28       2     170 ..     370     542 ..     369     548 .. 0.88

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 6.2e-32
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST.SEEE..EEETTSSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx..xxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid.lrvl..liiggvaardqlskldng 97 
                 + Qaeai+++ +g++v+v+  T sGK+l+++ip+l+++   +++++ + +++ Pt++La+++ + +k+++k++  l+ +   ++ g++  +++++++++
  KKY18320.1 370 SHQAEAINNLHDGHHVIVSTSTSSGKSLIYQIPMLHAL---EHDPESRGMYIFPTKALAQDQKRSMKEMLKFMAgLENViaETFDGDTPMQDRNVIREE 465
                 58*********************************999...58999*************************95534433123477***********999 PP

                 CSEEEEEHHHHHHHH....HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddll....stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlp 170
                 ++i++++p++l+  +    ++ +  l++++++V+DE + + +  f+ ++  i+++l++i++     + ++i +SAT+ 
  KKY18320.1 466 ARIILTNPDMLHLTIlpqeDSWRTFLKNLKYVVVDELHVYNSL-FGAHMAFIMRRLRRICAAVGnRKVKFISCSATVA 542
                 ************9666865333344*****************9.***************9998878888*******97 PP

>> DUF1998  Domain of unknown function (DUF1998)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.9   4.9e-24   1.8e-20       1      83 []     975    1064 ..     975    1064 .. 0.94

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 4.9e-24
     DUF1998    1 lehalinalplflqcdesdlgteckapedep......rkrpariliydavp..gGaGiaekaaelleellraalelieecdCeeaGCpaCl 83  
                  +ehal++++p+++ + ++d++teck++ +e+      rkrpar+++yda++  gG Gia+ka+e+++ ll++a+e++ +c+C  +GC +C+
  KKY18320.1  975 AEHALLSLMPTYVISMPGDVRTECKNALKEFakketqRKRPARLTFYDAKGgsGGCGIAAKAFEFVDILLQRAVERVGACHCV-EGCVECI 1064
                  69***********************777766778889*************9999****************************9.******7 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.1   1.5e+04      32      58 ..     436     462 ..     417     467 .. 0.65
   2 !   42.4   0.0   2.1e-14   7.4e-11       5     110 ..     599     710 ..     594     711 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.1
                 HHHHHHHTTSTEEEESTTSTHHHHHHH CS
  Helicase_C  32 vklllekkgikvavlhgelpqnereei 58 
                 +k++   +++ + +++g++p ++r+ i
  KKY18320.1 436 LKFMAGLENVIAETFDGDTPMQDRNVI 462
                 455544557888888888888888766 PP

  == domain 2  score: 42.4 bits;  conditional E-value: 2.1e-14
                 HHHHHHHHTTTTSEEEEEESSHHHHHH.....HHHH....HHHT....TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEE CS
  Helicase_C   5 allellkleeeggkilifvntidrlek.....vkll....lekk....gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVin 90 
                  +++l+    +g +++ f++ ++++e              l  +    +  v  + g  + ++r++i +++  g+   +iat+++e G+di +++ V+ 
  KKY18320.1 599 LICQLI---LRGVRVIAFCRVRKQCEVligsvR--TefnnL--ErpecAALVMGYRGGYSPQDRRQIEQDMFGGRLMGIIATTALELGVDIGSLDAVVT 690
                 456665...8999**********9975544431..033332..145666777778999*************999999********************** PP

                 SSSSSSHHHHHHHHTTSSST CS
  Helicase_C  91 fdlprnvtsyiqriGRtgRa 110
                 +++p++++++ q++GR+gR 
  KKY18320.1 691 MGFPYTIANLRQQSGRAGRR 710
                 *******************6 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   1.3e-10   4.5e-07       3     147 ..     367     508 ..     365     542 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.3e-10
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.......GEEEESSS-B--.. CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke...igkkvsgdkkka.k 97 
                 +l+++Q+eai+nl      ++ +++++   T +GK+l++   + + l++ +e++ + + p+k+l +  ++ +k++l+  +     i + ++gd+ ++ +
  KKY18320.1 367 QLYSHQAEAINNL------HDGHHVIVSTSTSSGKSLIYQIPMLHALEHDPESRGMYIFPTKALAQDQKRSMKEMLKFMAGLenvIAETFDGDTPMQdR 459
                 7899*********......5889****************99999999999*******************888888887654366788999999999988 PP

                 ......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS. CS
      ResIII  98 ekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak 147
                 +  +++++i++t+ ++l+  +   +e+s +   ++ +++++DE H +++ 
  KKY18320.1 460 NVIREEARIILTNPDMLHLTI-LPQEDSWRTFLKNLKYVVVDELHVYNSL 508
                 88899**************99.778888888888888********98874 PP

>> CDT1  DNA replication factor CDT1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   6.9e-08   0.00025       2      70 ..      87     156 ..      86     254 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 6.9e-08
        CDT1   2 PskYevLlelFkaldtivsmlenrke.titfakvkkaVermsrksfeekhLaqiktvyPeayklkqekql 70 
                 P  + +L+++ +al+ +  + ++rk+ ++tf+ +k aVe  +++    +++a+ik ++P+++++ +  +l
  KKY18320.1  87 PEDLTRLAQVHRALNLVYTFCCTRKHiATTFNTIKSAVETHIKRPLIIEDVARIKFLIPNSINFAYVDEL 156
                 778899***************9999935689*********************************976654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.87u 0.25s 00:00:01.12 Elapsed: 00:00:00.47
# Mc/sec: 7412.84
//
Query:       KKY18321.1  [L=401]
Description: hypothetical protein UCRPC4_g05032 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.025   13.9   1.8       0.13   11.6   1.9    2.0  1  Helo_like_N    Fungal N-terminal domain of STAND proteins
       0.19   11.4   0.0       0.35   10.5   0.0    1.4  1  CEP1-DNA_bind  CEP-1, DNA binding


Domain annotation for each model (and alignments):
>> Helo_like_N  Fungal N-terminal domain of STAND proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.9   1.4e-05      0.13       7     131 ..       3     127 ..       2     133 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.4e-05
  Helo_like_N   7 asgvlalvtfalqssksLyetvksfrsrdktvreLkeeleaLeevLesLeevavaeeeselalLklpllrCgkaCkefeqvikkcskkssksrtsfrD 104
                  +++v+ l+t a + s  L+++ +s + +  +v  + +e++ L++vL  L+e+ + + +   ++ ++ l++ ++  k   ++i ++++   +++ ++ D
   KKY18321.1   3 TATVVDLATRASDLSSKLHAIDESVKRSAADVESIANEIAILSAVLWRLHETMTFDPRRYTESFQQDLEEITSELKLVFEEIFDVVTE-LEKEDGLHD 99 
                  57899**********************************************7778999999999999999888877655556666555.468889999 PP

  Helo_like_N 105 wakleymg.gdindfketlagYKsTisi 131
                   +  + ++ g ++ +++ l + K+T+++
   KKY18321.1 100 GVVKRLLKkGKVRYLQKHLEALKTTLAV 127
                  7777777778888888888888888876 PP

>> CEP1-DNA_bind  CEP-1, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.9e-05      0.35      55     102 ..     120     167 ..      99     185 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.9e-05
                    --EEEEEEEEE-SSS-HHHHTT-TT-B----HHHHHT--SSSTT-SEE CS
  CEP1-DNA_bind  55 qlslkvrlvkydkkenveyairvprsdlakcrshrereektpresffy 102
                     l   + ++k   ++  ey+   pr d+ k   h+ ree+   +s+f 
     KKY18321.1 120 ALKTTLAVMKTVLQHGCEYSPDGPRQDIFKAPPHTLREEHAILDSIFL 167
                    45555667778888999****************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       905  (0.0504769); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2745.50
//
Query:       KKY18322.1  [L=191]
Description: putative golgi membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-76  254.9   3.8    3.6e-76  254.7   3.8    1.0  1  Rer1      Rer1 family


Domain annotation for each model (and alignments):
>> Rer1  Rer1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.7   3.8     2e-80   3.6e-76       3     171 .]      18     189 ..      16     189 .. 0.93

  Alignments for each domain:
  == domain 1  score: 254.7 bits;  conditional E-value: 2e-80
        Rer1   3 lkklkrkyqklldkltpytleRWiatlvllllfllriillqgfyivaYalgiylLnlllafltPkfdpsleeeaaeeeaeega.elpt.....kkdeef 95 
                 ++++ r+yq +ld++tpy+l+RW++t+vl+llf+lriil+qg+yivaY+lgiylLnl+lafl+Pkfdpsl++++    +e+g+ +lpt     k+d ef
  KKY18322.1  18 TSRFMRQYQFYLDQSTPYVLQRWTGTFVLFLLFFLRIILAQGWYIVAYCLGIYLLNLFLAFLQPKFDPSLTQDE---GLEDGEsSLPTresnaKDDGEF 113
                 678899***************************************************************99964...44444446887666668888** PP

        Rer1  96 rPfirrlpEfkfWlsatkailialvltffevfdvpVfwpiLlvyfivlfvltmrrqikhmikykyvpfdlgKkkyk 171
                 rPfirrlpEfkfW++at+ai+i++v++++++fd+pVfwp+L+vy+++lf ltmrrqi+hmiky+y+pf++gK++y+
  KKY18322.1 114 RPFIRRLPEFKFWHAATRAIAIGFVCSWLSIFDLPVFWPVLVVYWLILFSLTMRRQIQHMIKYRYIPFSIGKTRYG 189
                 **************************************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.49
# Mc/sec: 1184.03
//
Query:       KKY18323.1  [L=217]
Description: hypothetical protein UCRPC4_g05034 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1438.01
//
Query:       KKY18324.1  [L=2087]
Description: putative phosphatidylinositol 3and 4-kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-51  174.7   0.1    6.7e-51  173.5   0.1    1.6  1  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
      1e-43  149.9   0.2      1e-43  149.9   0.2    2.1  3  FAT             FAT domain
    5.4e-31  106.5   2.1    1.6e-30  105.0   0.1    3.0  4  UME             UME (NUC010) domain
    0.00024   21.6   0.1        1.5    9.4   0.0    3.1  2  TPR_19          Tetratricopeptide repeat
     0.0046   16.9   0.0      0.026   14.4   0.0    2.4  1  DUF3385         Domain of unknown function (DUF3385)
     0.0074   15.4   1.8      0.018   14.2   0.3    2.5  3  IFRD            Interferon-related developmental regulator (I
  ------ inclusion threshold ------
       0.16   12.4   0.1       0.16   12.4   0.1    3.2  3  BTAD            Bacterial transcriptional activator domain
        0.2   11.7   0.6        1.1    9.3   0.2    2.6  2  GvpK            Gas vesicle protein K
       0.67   10.6   5.0       0.94   10.2   0.2    2.7  1  TPR_16          Tetratricopeptide repeat
       0.85   10.0   4.4          2    8.8   0.5    3.4  3  TPR_12          Tetratricopeptide repeat
        4.7    8.3   7.3         16    6.7   0.1    4.6  4  TPR_14          Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.5   0.1   4.1e-54   6.7e-51       2     248 ..    1792    2035 ..    1791    2036 .. 0.91

  Alignments for each domain:
  == domain 1  score: 173.5 bits;  conditional E-value: 4.1e-54
                      EEEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHH...HHHH CS
  PI3_PI4_kinase    2 sagiykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasves...lrva 91  
                      ++++ k +ddlr+d++ +++ ++++  l+++     r+l ++ty+v+pl ++cg+ie+v++ +t++ +l + +++kg ++++ +e+   l   
      KKY18324.1 1792 YGLLAKPKDDLRKDQRLMEFNTMINRFLKRDVDASTRRLYIRTYAVVPLNEECGLIEWVDNLKTFRDILLKIYKEKGTAINY-MEIrtlL--- 1880
                      6788999******************************************************************986444443.3442332... PP

                      CHCHCCHHHHHCC.HHHHHHTSSTTHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCCTCS CS
  PI3_PI4_kinase   92 ldkkklkkekklk.fekrtalkpksgllqeFvkkspsaeewlearkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGlilpde 183 
                       d+       kl  f+kr ++ ++ + +++Fv+++ ++ +w++ar +++rs a++s+++++lg+gDRh +Nil ++++g   h+Df  +l d+
      KKY18324.1 1881 -DEACSGDPTKLDiFDKRVLKMFPPVFHEWFVETFMDPSAWFAARLRYTRSAAVMSMVGHVLGLGDRHGENILFEEDNGGTLHVDF-NCLFDK 1971
                      .22222233344469***********************************************************************.5666** PP

                      HCSSSS-.SSSSSS-THHHHHHTSTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCSS CS
  PI3_PI4_kinase  184 wkllpfpqekvPfrltrelvlaidpskdeglfresceealealrrdqnlltrllkkavkdglilw 248 
                      + +++ p e vPfrlt+++++a++p +  g fr++ce +l++lr +++ l+++l+ +++d+ +++
      KKY18324.1 1972 GLTFEKP-EMVPFRLTHNMIDAMGPYRYDGPFRRCCEITLQLLRANEEALMTILETFLHDPTTDF 2035
                      *******.****************************************************99875 PP

>> FAT  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.4   2.3e+03     245     295 ..     595     643 ..     592     647 .. 0.87
   2 ?   -3.8   0.2       3.5   5.8e+03      55      95 ..     681     720 ..     639     738 .. 0.54
   3 !  149.9   0.2   6.3e-47     1e-43       2     346 .]    1219    1551 ..    1218    1551 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.4
                 HHCCCTCCCCCCCCCCCT.S...-SSCCHHHHCCHHCTCCCHSTTCCCCHH CS
         FAT 245 arcylkkGewqealqkldwseekieeilqsysaateidpswykawhtwalf 295
                  rc++  Ge + +l+k ++ ++   +i ++ + a e+ + + +a+ +wa +
  KKY18324.1 595 RRCLAAMGE-LMKLGK-SRVNTALPQICAYLRSALEFVDLSDQAFVSWAEM 643
                 688899999.888999.6788889*************************87 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.5
                 CCCCCCCCCTS---SCCCCCHHHHHCCCCCHHHCHHCCHHC CS
         FAT  55 arqlldtelsalvgesynraygvlvrvQmlaEleeiiqykq 95 
                   + + ++ s+lv e+ ++ +++l ++Q +a++e  i   +
  KKY18324.1 681 LMSFILKNHSELVREIFQS-IPSLASIQVMAKFESEIRALK 720
                 3344455555555554444.456666666666665555554 PP

  == domain 3  score: 149.9 bits;  conditional E-value: 6.3e-47
                  CCTTCCCCTSSSGHHCCCCT......TSSSS--CCCHCCCCHH--CCHCHHCCCHCCCCCCCCCTS---SCCCCCHHHHHCCCCCHHHCHHCCHHCS CS
         FAT    2 plaaeaaWrlgqWdsmeeylsvlk..kdspdkaffeailalhrnqfdeakeliekarqlldtelsalvgesynraygvlvrvQmlaEleeiiqykqk 96  
                  p a+ea+W+ g+W+++ +yl++ +    +++ ++ +a+l+lhr++ +++++ ++  r  l ++l a +  s +++ ++l +++ l+E+e i+++   
  KKY18324.1 1219 PFAVEATWNTGKWQKLGDYLKSRNnkAGDFNIEIGSALLCLHRHDKESFEMKVKDLRRSLGESLNASNTSSLQSCHETLFKLHVLTEIETIANVQH- 1314
                  789*******************99445556666**********************************************************99988. PP

                  S----TTTTTTT----TTS-TTTGCCCTTTCCCCTCCCHCCCHCHCCS-STTCCCCCCCCHCHHHHCCSTTHHCCCCCHCTT.....TT.TSSCCCH CS
         FAT   97 lssseklksllktWrkRlpgcqdnvevwqdiltvRslvlspiedllkgvkaemwlkfanlarksgrlslAekaLkelleedpeewlprappevvyay 193 
                       ++++l+ t+ +Rl     +v+++q +l +R+ v++ +e  l   +a++wl  a+larksg+l++A +a + + +  +        +   +++
  KKY18324.1 1315 ----GDREQLFPTLDRRLDILGAYVSDKQYLLGIRRAVMELTEGFLPLDRASAWLTSAKLARKSGSLDQALNAVLHATHAGD--------SSASIEH 1399
                  ....69**************************************999999**********************9999966666........68899** PP

                  HHHHHHCCHHHHHSSCCHHHHCCTSSCCC..SS-SS---.............HH.HHCCCTCCCCCCCCCCCT.S...-SSCCHHHHCCHHCTCCCH CS
         FAT  194 lKylwssgeqkealqkLreftsellekke..elqsgleaq.keptnleeftkll.arcylkkGewqealqkldwseekieeilqsysaateidpswy 286 
                  +++lw++g+++ a+q L+  +++ + + +  ++ ++   +       +e ++++ ar++l++++w+   ++     ++++ i  sy++at ++++w 
  KKY18324.1 1400 ARLLWKEGRHRRAIQVLEGALDSGAFRSHnrTAAEDD--RvTLTADQQEEQNKItARAHLLLAKWLDLGGQ-----TQSDVIIRSYRKATDFHRRWD 1489
                  **********************888887634333333..3535555555555555***********99999.....459****************** PP

                  STTCCCCHHHHHCCHHHHHHSSSS..S-TCC.HHHHCCT..CCHHHHTTTSSTTTCHHHHHC CS
         FAT  287 kawhtwalfnfevvskeeeqkeeee.pedlq.eyvvpavkgflksislssenslqdtlRLLt 346 
                  k ++++++++++ +  e++++  +e  + l  e++  +++++l+++  +s+  +q ++++Lt
  KKY18324.1 1490 KGHYYLGKHYNKLIDSEKTKPIGKEaTTYLTgELAKIVIDNYLRAAMVGSKYVFQTLPKILT 1551
                  *****************999555554677779****************************98 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.4   5.5e+03      22      53 ..     325     357 ..     319     364 .. 0.76
   2 ?   -3.2   0.0       4.9     8e+03      25      75 ..     464     510 ..     448     513 .. 0.46
   3 !  105.0   0.1   9.9e-34   1.6e-30       1     102 []     566     667 ..     566     667 .. 1.00
   4 ?   -3.5   0.0       6.2     1e+04       9      19 ..     708     718 ..     679     757 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.4
         UME  22 gkkslaekkraikaleeliklagss.issalpq 53 
                  k+++ +++ +i +le++  + g++ ++++l +
  KKY18324.1 325 AKNDVPQQETCIFSLEQIALVSGEEeLNIVLVR 357
                 46689999********99888887766666655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.9
         UME  25 slaekkraikal.eeliklagssissalpqimacLqsaleidelrsaalsvW 75 
                 +l++++r++ a+   li+  +s       q+ + L     ++e+r+  lsvW
  KKY18324.1 464 KLCTQERNLAAIlAYLISQPSSD----TEQLATRLLA-EVSPEFRERELSVW 510
                 56666666666512233332222....2333333322.23356666667766 PP

  == domain 3  score: 105.0 bits;  conditional E-value: 9.9e-34
         UME   1 fLqqhilgiltrlseklndshgkkslaekkraikaleeliklagssissalpqimacLqsaleidelrsaalsvWatllsnlededleplleqtfaliv 99 
                 fL+qh+lgi+t+++++lnd +  ++l ek+r++ a++el+kl +s++++alpqi+a L+sale  +l ++a+  Wa+++++l+  d+epl++qt+a+iv
  KKY18324.1 566 FLEQHVLGITTNFASTLNDGQVIHPLIEKRRCLAAMGELMKLGKSRVNTALPQICAYLRSALEFVDLSDQAFVSWAEMIESLDAIDIEPLVDQTVAVIV 664
                 9************************************************************************************************** PP

         UME 100 qlw 102
                 q+w
  KKY18324.1 665 QHW 667
                 **9 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 6.2
         UME   9 iltrlseklnd 19 
                 +++++++++  
  KKY18324.1 708 VMAKFESEIRA 718
                 33333333333 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00093       1.5       3      42 ..    1160    1199 ..    1158    1199 .. 0.96
   2 !    8.6   0.1    0.0016       2.6       3      53 ..    1373    1421 ..    1363    1426 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00093
      TPR_19    3 aegdyaeAlalleqalqedpknaearllLAeallalgqld 42  
                  ++g+ ++A++ +e  l+e p++ +++ +L  +l ++gq+d
  KKY18324.1 1160 KAGRWTAAQRWYELQLDEHPHDCDVQVNLLTCLKESGQFD 1199
                  689***********************************98 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0016
      TPR_19    3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpe 53  
                  ++g +++Al++   a    ++++ a +  A++l++ g+   A+++L+ +++
  KKY18324.1 1373 KSGSLDQALNAVLHA--THAGDSSASIEHARLLWKEGRHRRAIQVLEGALD 1421
                  677888886666665..5899*************************98877 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.6e-05     0.026      26      55 ..     794     823 ..     778     874 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
     DUF3385  26 sirrevikllGilGALDPykhkqveeraed 55 
                  i  +++++lG++G LDP +h +v+e++e 
  KKY18324.1 794 AIATDAARCLGLIGCLDPNRHESVREKTEI 823
                 677899***************999887443 PP

>> IFRD  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.3   1.1e-05     0.018      48     161 ..     231     350 ..     219     361 .. 0.74
   2 ?   -2.9   0.1       1.7   2.8e+03     119     165 ..     773     818 ..     741     855 .. 0.61
   3 ?   -3.1   0.0       1.9   3.2e+03     126     181 ..    1812    1866 ..    1804    1872 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
        IFRD  48 t......eksaktReaaLesllellsshyleefveerlatlldalekslkkgkseEqalAlkalallcitlgagdeseeileelkpvLkriikdssv.. 138
                        + s k R aaL s++++l++    ++++ + + + + +++s+k++  e +++A++al++++i    g +  ei++e + +L   + +  +  
  KKY18324.1 231 LkiyplfQRSPKCRVAALLSIRKILMHSANTRYLKLSESPIGELCLQSMKSSLRELRIAAANALTAFLIR-RNGVP-LEIVRENRILLLDFLASMYAkn 327
                 444455599***********************************************************99.33333.3566665555555444333200 PP

        IFRD 139 slsakaaaieaLglltfvggade 161
                 ++    ++i +L  +++v+g++e
  KKY18324.1 328 DVPQQETCIFSLEQIALVSGEEE 350
                 45556667777777777777665 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.7
        IFRD 119 eeileelkpvLkriikdssvslsakaaaieaLglltfvggadeeeie 165
                  +i   ++ vL   +k +s  +++ + a+++Lgl+  ++ +  e++ 
  KKY18324.1 773 STITALTRAVLDCSVKFNS-VPAIATDAARCLGLIGCLDPNRHESVR 818
                 2333333444444444444.445555566666665555555544444 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.9
        IFRD  126 kpvLkriikdssvslsakaaaieaLglltfvggadeeeieelmeflleifssdgqs 181 
                   ++++r +k +  ++s++  +i++++++ +  + +  e ++ ++++ +i+ + +++
  KKY18324.1 1812 NTMINRFLKRDV-DASTRRLYIRTYAVVPLNEECGLIEWVDNLKTFRDILLKIYKE 1866
                  555666666666.9999999999999999999999999999999999998887775 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   9.6e-05      0.16      66     125 ..    1152    1211 ..    1144    1216 .. 0.91
   2 ?   -2.1   0.0       2.9   4.7e+03      67     144 ..    1220    1296 ..    1210    1297 .. 0.73
   3 ?   -0.2   0.3      0.76   1.2e+03      12      34 ..    1399    1421 ..    1391    1476 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.6e-05
                  HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
        BTAD   66 ealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerlrrl 125 
                  e+ + ++ + Gr+ +a++ +e +++ehP++ +    l+++l  sG+    L++Y++lr +
  KKY18324.1 1152 EQQILEHRKAGRWTAAQRWYELQLDEHPHDCDVQVNLLTCLKESGQFDVLLNQYDSLRTV 1211
                  6666678899**********************************************9976 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.9
                  HHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHH CS
        BTAD   67 alaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerlrrlLaeeLgvepgpelralhee 144 
                    +ea +  G+++++ ++l++  ++           +++l+r ++++  ++v ++lrr+L e L  +  + l++ he 
  KKY18324.1 1220 FAVEATWNTGKWQKLGDYLKSRNNKAGDFNIEIGSALLCLHRHDKESFEMKV-KDLRRSLGESLNASNTSSLQSCHET 1296
                  5677778888888888888777777766667777777788887777765555.8889999999999888888888875 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.76
                  HHHHHHHTT-HHHHHHHHHHHHT CS
        BTAD   12 agraalaagdpeeaaelleaAla 34  
                   +r + ++g++ +a++ le Al+
  KKY18324.1 1399 HARLLWKEGRHRRAIQVLEGALD 1421
                  46777788888888888888886 PP

>> GvpK  Gas vesicle protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.2   0.00069       1.1      30      77 ..    1103    1150 ..    1085    1155 .. 0.87
   2 ?   -2.4   0.0       3.2   5.2e+03      63      80 ..    1263    1280 ..    1251    1282 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00069
        GvpK   30 rqaiRRmeagdlsdeeierlgetLmkleeeleelkesfgleeedLnld 77  
                  +q iRR++a+  s+ee +++   L+++ +e++e  +  g++++ +  +
  KKY18324.1 1103 EQYIRRIDAEGQSQEERDEMLIRLQEIYTEIDEPDGIEGISAQLFAPN 1150
                  699******************************999999988755555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.2
        GvpK   63 lkesfgleeedLnldLgp 80  
                   kesf+++ +dL+  Lg+
  KKY18324.1 1263 DKESFEMKVKDLRRSLGE 1280
                  5799**********9997 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00058      0.94       2      38 ..    1398    1429 ..    1397    1433 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00058
      TPR_16    2 alaraalragdyddAaaaleaalkrdpssPdaaeAll 38  
                  ++ar++++ g+ ++A+ +le al+++     a ++++
  KKY18324.1 1398 EHARLLWKEGRHRRAIQVLEGALDSG-----AFRSHN 1429
                  69***********************9.....666665 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       0.6   9.8e+02      16      27 ..    1161    1172 ..    1157    1200 .. 0.54
   2 ?    8.8   0.5    0.0012         2      27      73 ..    1378    1421 ..    1362    1422 .. 0.87
   3 ?   -2.1   0.1       3.1     5e+03      39      62 ..    1447    1470 ..    1440    1487 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.6
      TPR_12   16 lgrydeAlelle 27  
                  +gr++ A++++e
  KKY18324.1 1161 AGRWTAAQRWYE 1172
                  445555554444 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0012
      TPR_12   27 ekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73  
                  ++al+++   l  +h++ +++ +  +rl+++ gr++ A++ le al+
  KKY18324.1 1378 DQALNAV---LHATHAGDSSASIEHARLLWKEGRHRRAIQVLEGALD 1421
                  4455555...557899***************************9986 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.1
      TPR_12   39 pdhpltattlrnLgrlyralgrye 62  
                  +++  ta++   L+ ++++ g+++
  KKY18324.1 1447 EQNKITARAHLLLAKWLDLGGQTQ 1470
                  6677899*******9998777765 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.49   7.9e+02      11      34 ..    1158    1181 ..    1153    1189 .. 0.87
   2 ?   -0.1   0.1       1.4   2.3e+03       3      24 ..    1363    1384 ..    1361    1395 .. 0.86
   3 ?    6.7   0.1    0.0096        16       8      29 ..    1400    1421 ..    1398    1439 .. 0.90
   4 ?   -2.6   0.1       9.4   1.5e+04       2      29 ..    1454    1483 ..    1453    1496 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.49
      TPR_14   11 llalGdpdeAiallrralalaPdd 34  
                  ++ +G++ +A + ++  l+ +P d
  KKY18324.1 1158 HRKAGRWTAAQRWYELQLDEHPHD 1181
                  5679******************76 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.4
      TPR_14    3 allalaeallalGdpdeAiall 24  
                  a+l  a++ + +G +d+A+++ 
  KKY18324.1 1363 AWLTSAKLARKSGSLDQALNAV 1384
                  89999*************9875 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0096
      TPR_14    8 aeallalGdpdeAiallrrala 29  
                  a++l+  G++++Ai++l+ al+
  KKY18324.1 1400 ARLLWKEGRHRRAIQVLEGALD 1421
                  899***************9986 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 9.4
      TPR_14    2 eallalaeallalGdpde..Aiallrrala 29  
                  +a+l+la+ l   G+++    i+ +r+a +
  KKY18324.1 1454 RAHLLLAKWLDLGGQTQSdvIIRSYRKATD 1483
                  688888888888887554448888888866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2087 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      640  (0.0356964); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.20u 0.34s 00:00:01.54 Elapsed: 00:00:00.53
# Mc/sec: 11906.65
//
Query:       KKY18325.1  [L=612]
Description: putative ubiquinone biosynthesis [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-21   76.0   0.0    2.2e-12   47.2   0.0    2.6  2  ABC1      ABC1 family
  ------ inclusion threshold ------
      0.027   14.4   0.2       0.18   11.7   0.1    2.3  2  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   9.6e-10   8.6e-06       5      33 ..     138     166 ..     136     171 .. 0.92
   2 !   47.2   0.0   2.5e-16   2.2e-12      36     117 ..     206     287 ..     199     289 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 9.6e-10
        ABC1   5 kkleeiFaefdeePiAaASiaqVhrAklk 33 
                 ++ ++iF+ef+e+P++++ iaqV++Aklk
  KKY18325.1 138 QPFDDIFEEFQEKPLGVGAIAQVYKAKLK 166
                 5789************************8 PP

  == domain 2  score: 47.2 bits;  conditional E-value: 2.5e-16
        ABC1  36 eeVavKvqrpgvkkriksDlellkllakllkkflkelrldleelvdefskslleEldferEAknaekfrenfaklkevkvPk 117
                 + Va+Kv +p+v++++++Dl+++ ++akl++ ++    l+l   v++f + ++ +ld++ E +n  kfr+nf++ ++  +P 
  KKY18325.1 206 SYVAIKVLHPHVERTVRRDLRIMGFFAKLINAIPTMHWLSLPDEVAQFGEMMRLQLDLRIECANLTKFRKNFQERTTAWFPY 287
                 57*****************************9999999***********************************988766665 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.053   4.7e+02      22      69 ..     206     253 ..     182     266 .. 0.80
   2 ?   11.7   0.1     2e-05      0.18     114     181 ..     275     353 ..     206     363 .. 0.62

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.053
                 -EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTE CS
         APH  22 ryvlrrnpparaaeeirrevallrlLakagv.pvPevlagdtddeeigl 69 
                 +yv   + +++ ++++rr ++++ ++ak+ +  +P ++++   de++ +
  KKY18325.1 206 SYVAIKVLHPHVERTVRRDLRIMGFFAKL-InAIPTMHWLSLPDEVAQF 253
                 677666666679*****************.7799999999888887765 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2e-05
                 TB-SHHCHTCCHHHHHHCHHHCCCGCCTCC..HHHHHHHH............HHHHHHHH--SSS-EEEE-SS-SGGGEEEC CS
         APH 114 pladflaqdlellrqlesatarllaselld..lleeleeq............vlaalaallpgelptvllHgDlhpgNllvd 181
                 + + ++ + ++++++ +  t++ l +e+ +  +le++ ++             l+a++  l   l   ++H DlhpgN++v+
  KKY18325.1 275 KNFQERTTAWFPYPYTDYTTRQVLVEEFAQgiPLEAFLQNgggvfqqaiageGLDAFLHML---LIDNFVHADLHPGNIMVR 353
                 4444444555555555555556666666667666666666777766666444444444444...45889***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.54
# Mc/sec: 3385.24
//
Query:       KKY18326.1  [L=224]
Description: putative cytochrome c1 heme lyase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.7e-103  343.8   1.2   1.1e-102  343.6   1.2    1.0  1  Cyto_heme_lyase  Cytochrome c/c1 heme lyase


Domain annotation for each model (and alignments):
>> Cyto_heme_lyase  Cytochrome c/c1 heme lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.6   1.2  6.1e-107  1.1e-102      99     292 .]       1     202 [.       1     202 [. 0.98

  Alignments for each domain:
  == domain 1  score: 343.6 bits;  conditional E-value: 6.1e-107
  Cyto_heme_lyase  99 vdLpteReissiPkgdeeglWeYPspqqmynAmlrKGyedipedavesmvavHnflnEgaWeeileWEkkfakglakgwkkckrgeekveeele 192
                      ++Lp+eReissiP+gd e++WeYPspqqmynAmlrKGy+d+p davesmvavHnflnEgaW+ei++WE+ f +gl++gwkkc+ gee++++ ++
       KKY18326.1   1 MSLPLEREISSIPRGDAESNWEYPSPQQMYNAMLRKGYTDTPIDAVESMVAVHNFLNEGAWQEIVGWERIFGRGLKEGWKKCSMGEENMAMAQA 94 
                      58***************************************************************************************99888 PP

  Cyto_heme_lyase 193 kee.........ePkLlrFqGrpkelsPkarllqllgklfPskfstelPFDRHDWlvlRkteeeekkevrYviDyYsgpdeetGepvfllDvRP 277
                      ++e         +PkLlrF+Grpke++Pka +lq++g+l+P+kf+te+PFDRHDW+++R+t+ +  +++rYviDyYsg++e+tGep+f+lD+RP
       KKY18326.1  95 RAEmrgivddtpQPKLLRFEGRPKEMTPKAVMLQVMGWLYPQKFGTEPPFDRHDWYIQRQTPAG-PRQIRYVIDYYSGEPEPTGEPIFYLDIRP 187
                      8889********************************************************9998.9**************************** PP

  Cyto_heme_lyase 278 aldsltaaadRlvrw 292
                      a+d++ta+a+R++rw
       KKY18326.1 188 AIDTPTAVAERVMRW 202
                      **************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1531.13
//
Query:       KKY18327.1  [L=626]
Description: putative zinc finger cchc domain containing [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-19   68.2   0.0    1.5e-18   66.7   0.0    1.8  1  PAP_assoc     Cid1 family poly A polymerase
    9.2e-05   22.7   0.0    0.00031   21.0   0.0    2.0  2  NTP_transf_2  Nucleotidyltransferase domain
  ------ inclusion threshold ------
      0.026   14.6   0.0      0.058   13.5   0.0    1.5  1  Polbeta       Polymerase beta, Nucleotidyltransferase


Domain annotation for each model (and alignments):
>> PAP_assoc  Cid1 family poly A polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   2.5e-22   1.5e-18       2      62 .]     292     360 ..     291     360 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 2.5e-22
                 HHHHHHHHHHHHHH..T--TTTEEEECSS.T-EEEHHHHCGCS-.....SSEECESSSSEBEETTCCCC CS
   PAP_assoc   2 LGeLLigFFeyYgr..eFdyenvvisirt.ggiltkkekgwesa.....eskernrfllaIeDPfeldn 62 
                 LG+LL+gFF yY+    F y+++v+sirt ggil k +kgw++a      ++ + r+ll+IeDPfe ++
  KKY18327.1 292 LGSLLRGFFGYYADprGFHYTQEVVSIRTqGGILRKASKGWTEAkragnDNSIKLRYLLCIEDPFEIEH 360
                 9************888*************9*************9*****8999*************987 PP

>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   5.3e-08   0.00031      14      74 ..      16      74 ..       2     109 .. 0.73
   2 ?   -2.9   0.0       1.5     9e+03      58      93 ..     170     211 ..     162     213 .. 0.64

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 5.3e-08
                  TSEEEEEHHHHCTTSCTTSSEEEEEEESTTCHHHHHHEHHHHHHHHCCCEEECTTEEEEEE CS
  NTP_transf_2 14 vakvvlfGSyarGtalkgSDiDllvvlpeevsrekkeegleklaeiikfleellglevdlv 74
                   +k+ ++GS a+G a +gSD+Dl + +p++    +   ++ +  ++ ++  +  g+ + l+
    KKY18327.1 16 HVKLKCYGSMANGFAVPGSDMDLMLMFPKDE--GPIGAIETECRRMLEKKILDAGYGARLL 74
                  68999*************************4..3555555555555555555555555555 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.5
                   HHCCCEEECTTEEEEEECEEECCC......CTEEEEEECEEE CS
  NTP_transf_2  58 eiikfleellglevdlvtrekled......pllvksileerp 93 
                   ++i f +++ +++  l+ ++ + d       l+vks+++ r+
    KKY18327.1 170 CDINFSNYVAVYNTQLLRCYCICDdrvrqlGLVVKSWVKARK 211
                   566666776666666665555555555566677777777776 PP

>> Polbeta  Polymerase beta, Nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   9.7e-06     0.058      19      44 ..      22      53 ..       4      83 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.7e-06
                EEEEE-S------EEEEEEEESS-......-- CS
     Polbeta 19 FGSrakgkareeSDiDlavllkek......ld 44
                +GS+a+g a + SD+Dl++++ ++       +
  KKY18327.1 22 YGSMANGFAVPGSDMDLMLMFPKDegpigaIE 53
                9********************99866554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3928.53
//
Query:       KKY18328.1  [L=732]
Description: putative transcription initiation factor iif subunit alpha [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.023   13.3  61.8       0.16   10.5  59.9    3.3  2  TFIIF_alpha  Transcription initiation factor IIF, alpha subun


Domain annotation for each model (and alignments):
>> TFIIF_alpha  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   3.0      0.17     3e+03     307     347 ..     162     188 ..     142     215 .. 0.49
   2 ?   10.5  59.9   8.9e-06      0.16      95     441 ..     235     622 ..     168     697 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.17
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  TFIIF_alpha 307 eeekkeieqdedeeekeeekkeeegklskkkkkakklkkkk 347
                   ee+                ++ + k+ +   k k++++k+
   KKY18328.1 162 AEEP--------------PPNDMDTKEREAYLKRKEERQKE 188
                  1111..............11112222222222222111111 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 8.9e-06
                  TTSXEEEEESSTTS..EEEEEEEXSSSSSS.EEEEEEEEETTSE..EEEEEEEEEEEEEEGGCSTXXSSTTTHHHHHHHXSSSXSHHHHHHXXXXXX. CS
  TFIIF_alpha  95 ddqPWiLevggkeggqkkfrGireGgvsen.asyyvltkapdga..feAypvneWynFnpvaryktLtleeAEeeferRkktlngfslmlkkalkkge 189
                  ++ PW Le   +   ++   G  +  +s + a+ ++   ++ g    + +pv++Wy+F p ++ ktLt+eeAE+e+++ +k  +      + a+k+ e
   KKY18328.1 235 EKLPWHLE---DFNDKHCLVGTNQPTMSHQyAALFLEDDSARGTpcARLIPVEKWYKFAPKKTVKTLTIEEAEREMKKLQKDPDWLLKTRMEAIKERE 329
                  55677777...333334577777766663224445544455554444669**********************************99999999998877 PP

                  ....XXXX....XXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...................XXXXXXXXX....X CS
  TFIIF_alpha 190 aavgdede....eeek......kkgggGrskdLkikdkegddeedsdesdkgdededeekkkkKk...................kkkaknkkkldddk 258
                  +++          + +      ++++ G + dL  +d    d+e+++  ++ ded++ ++++ K+                   +kk +  ++l+ + 
   KKY18328.1 330 NEMLARMSkglyTTSQgtsvaaQRAEDGAA-DLDFEDDF-ADDEEGNLFEEKDEDQKLAEQRIKQeqlsanffdnkderevdieEKKEQLMRSLQGKY 425
                  654332220111233344455566666766.99999995.5567899999999999998887787789999998888888877755566666777777 PP

                  XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXX..X CS
  TFIIF_alpha 259 kkkrgsdddadeydsddGddegrEldyisDdsasendpeeredkkseEeeekkeieqdedeeekeeekkeeegklskkkkkakk...lkkkkkekdkk 353
                   kk ++   + e + + G d + +  y sD+s+ +++ e   + k+eEe + ke++ ++++ e  +  +   g  + +++k+k      ++     k 
   KKY18328.1 426 SKKLNKALRKREGNYNLGSDSDEDNPYASDSSSTDSESE---QIKKEEEAKAKEEKAAQSSAEGGKSGTSTRGTNTPSGRKEKHggtGSDRDMAARKA 520
                  7777777888999999999***9*******999996655...33333333333334445555555554444444444444443310022333333223 PP

                  XX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX........................XXXXXX.. CS
  TFIIF_alpha 354 dS.ddeedsddsDideedsvslvkakKkkekkkeekvdsnessagnsrparpspeqkdskskrkaa......................seeskspvsv 428
                   S + + + + sD  + +  s   +kK k+    +    + s   +sr+++  p++++sk ++ +a                      s   +s   +
   KKY18328.1 521 GSvKRSGTPNLSDAGSGTDAS--VRKKDKH----KHLRTAASTVPGSRSSSLVPDASQSKKRKSLApgmggagsdsegggragaasplS---DSGNPS 609
                  331222334445544443333..3444333....456678889999999999999888554444559*************999986633...333334 PP

                  .XXXXXXXXXXXX CS
  TFIIF_alpha 429 paKklktenapks 441
                   +K+lk++    s
   KKY18328.1 610 SQKRLKLNPPTTS 622
                  6999998743322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1575  (0.0878465); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.35s 00:00:01.19 Elapsed: 00:00:00.55
# Mc/sec: 4022.66
//
Query:       KKY18329.1  [L=411]
Description: hypothetical protein UCRPC4_g05040 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-19   67.5   0.1    1.1e-18   66.7   0.1    1.4  1  zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal


Domain annotation for each model (and alignments):
>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.1   5.9e-23   1.1e-18       1      54 []     249     305 ..     249     305 .. 0.98

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 5.9e-23
  zinc_ribbon_10   1 wfDrvldvLvGddetsaknryalICskChshnGlap..keeleev.kyrCpkCgaln 54 
                     w+Dr+ dvL+G+det+ knr+ lICs+C+ +nG+ap  +++l+++ k+rC  Cga+n
      KKY18329.1 249 WYDRLFDVLLGEDETLPKNRLVLICSECRLVNGQAPpgVKSLDDFgKWRCGGCGAWN 305
                     9*************************************99999999**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1311  (0.0731218); expected 358.6 (0.02)
Passed bias filter:                      759  (0.0423336); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.52
# Mc/sec: 2371.83
//
Query:       KKY18330.1  [L=250]
Description: putative mfs multidrug [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-05   24.3   4.1    1.9e-05   23.8   4.1    1.3  1  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.028   13.7   0.1      0.044   13.1   0.1    1.2  1  CorA      CorA-like Mg2+ transporter protein
      0.054   13.3   0.0       0.06   13.1   0.0    1.1  1  M_domain  M domain of GW182
       0.18   10.6   2.2       0.23   10.3   2.2    1.1  1  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   4.1   4.2e-09   1.9e-05     237     352 ..      22     138 ..       1     139 [. 0.78

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 4.2e-09
       MFS_1 237 vlglsglllaglllallalvgailallagrlsdr.lgrrrrlllallllllaalglallavtssavllll...vlvliGf.glgfvfpsllalasdlap 330
                 v + s +l++g++l  +   +a++++++g l  +     + l++a  l ll+  +l  l++t++ +  l+   vl+ +G+ g+  ++p+++a+  ++a 
  KKY18330.1  22 VNNKS-VLTSGVYLLPFLGSMAFSMVIWGGLNGKkNRIGPCLIVAACLQLLGQGLLSTLPATEEVPKRLFgyeVLIAFGVgGYYAITPIVAAVECENA- 118
                 44455.788888888888888888********663344669*********************777777777568888888777777888888888888. PP

       MFS_1 331 peeagtasglfntagslggalg 352
                    +g a+g+++  + lgg++g
  KKY18330.1 119 --DRGIAQGIVSQSRFLGGSIG 138
                 ..8*****************98 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   9.9e-06     0.044     228     251 ..     190     213 ..     180     213 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.9e-06
        CorA 228 erlNrvmkvLTvltaiflPlTlit 251
                    N++m+v+T +ta+++Pl+++t
  KKY18330.1 190 DGFNDIMRVMTYITAAMVPLSILT 213
                 557******************987 PP

>> M_domain  M domain of GW182
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.3e-05      0.06      93     174 ..     112     196 ..      34     206 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.3e-05
    M_domain  93 plssslaslaaqqpsnqqlrvlaQqiQlAvksgflnhqi...LtqPlapqtltLLnQLlnaikrLqiaqqsLarrgvgGnvrqve 174
                 +++ + a    +q    q r l+  i lA+ +  ln+++   Lt  l+p +l LL+    ++k++  +qq+L r+  + + + + 
  KKY18330.1 112 AVECENADRGIAQGIVSQSRFLGGSIGLAIAALVLNNKVkdaLTGVLSPAQLRLLYDSPITLKQFPPEQQQLIRHVYSDGFNDIM 196
                 5555556666667777899*****************987666******************************9988887777655 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.2   5.2e-05      0.23      45     160 ..      26     145 ..       7     166 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5.2e-05
                 ..HHHHHHHTHHHHHH.HHHHHHHHHHHHTTHH.HHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGG.HHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHH CS
    Sugar_tr  45 svlsglivsiflvGai.iGslfagllgdrfGRk.kslliaavlfvigavlqaaakgknsvevlivg.RvlvGigvGlasvlvPmyisEiApkklRgalv 140
                 svl++ +  + ++G++ ++ ++ g l  +  R  ++l++aa l + g+ l  + +++++v   ++g  vl+ +gvG+ ++++P+ ++  +  + Rg+  
  KKY18330.1  26 SVLTSGVYLLPFLGSMaFSMVIWGGLNGKKNRIgPCLIVAACLQLLGQGLLSTLPATEEVPKRLFGyEVLIAFGVGGYYAITPIVAAVECENADRGIAQ 124
                 566666666677777623444444444444444368888999999**99999988886665555554*******************9888888887654 PP

                 HHH.HHHHHHHHHHHHHHHHH CS
    Sugar_tr 141 sly.qlaitfGilvaaifglg 160
                 ++  q+    G +  ai  l+
  KKY18330.1 125 GIVsQSRFLGGSIGLAIAALV 145
                 444044333333333444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.55
# Mc/sec: 1365.62
//
Query:       KKY18331.1  [L=811]
Description: putative aaa family atpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-59  198.1   0.0    1.3e-40  138.8   0.0    2.5  2  AAA           ATPase family associated with various cellular 
    5.9e-15   54.8   1.1    2.6e-06   27.1   0.4    2.8  2  AAA_lid_3     AAA+ lid domain
    2.4e-08   34.5   0.6      0.006   17.0   0.0    3.7  3  AAA_16        AAA ATPase domain
    2.9e-08   33.8   0.2      0.018   15.0   0.1    3.3  2  AAA_5         AAA domain (dynein-related subfamily)
    2.8e-07   30.9   0.2     0.0012   19.2   0.0    3.0  3  AAA_22        AAA domain
    6.5e-06   25.8   0.0     0.0079   15.7   0.0    2.6  2  AAA_7         P-loop containing dynein motor region
    3.5e-05   23.8   0.0     0.0029   17.6   0.0    2.4  2  Rad17         Rad17 P-loop domain
    3.6e-05   24.0   0.0    0.00056   20.1   0.0    2.4  2  AAA_2         AAA domain (Cdc48 subfamily)
    0.00014   22.2   0.0       0.91    9.9   0.0    2.8  2  RNA_helicase  RNA helicase
    0.00019   21.2   0.0       0.13   12.0   0.0    3.2  3  RuvB_N        Holliday junction DNA helicase RuvB P-loop doma
    0.00026   20.4   0.1       0.88    8.9   0.0    2.5  2  Mg_chelatase  Magnesium chelatase, subunit ChlI
    0.00036   20.4   0.0      0.028   14.2   0.0    2.7  2  Bac_DnaA      Bacterial dnaA  protein
      0.001   19.1   0.0       0.87    9.6   0.0    2.4  2  AAA_14        AAA domain
     0.0015   18.7   0.0     0.0039   17.3   0.0    1.6  1  CDC48_N       Cell division protein 48 (CDC48), N-terminal do
     0.0018   17.9   0.0      0.092   12.4   0.0    2.3  2  ATP-synt_ab   ATP synthase alpha/beta family, nucleotide-bind
     0.0029   17.8   0.0          2    8.5   0.0    2.4  2  AAA_33        AAA domain
     0.0073   16.2   0.0        4.9    7.0   0.0    2.9  3  ATPase_2      ATPase domain predominantly from Archaea
     0.0096   15.2   0.0       0.11   11.6   0.0    2.1  2  TIP49         TIP49 P-loop domain
  ------ inclusion threshold ------
       0.01   16.3   0.0        5.1    7.6   0.0    2.5  2  ABC_tran      ABC transporter
       0.01   16.1   0.0        4.7    7.4   0.0    2.6  2  AAA_28        AAA domain
      0.016   15.4   0.1       0.03   14.5   0.1    1.4  1  LIFR_D2       Leukemia inhibitory factor receptor D2 domain
      0.016   14.9   0.0        7.4    6.3   0.0    2.4  2  IstB_IS21     IstB-like ATP binding protein
      0.017   14.0   0.0       0.11   11.3   0.0    2.0  2  AFG1_ATPase   AFG1-like ATPase
      0.017   14.3   0.0        6.8    5.8   0.0    3.0  3  DUF815        Protein of unknown function (DUF815)
      0.029   14.1   0.0       0.32   10.8   0.0    2.4  2  AAA_29        P-loop containing region of AAA domain
      0.039   13.5   0.4        7.8    6.0   0.1    3.1  4  AAA_25        AAA domain
       0.13   12.0   0.0        2.9    7.6   0.0    2.6  2  AAA_24        AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   4.1e-18   2.7e-15       1     130 [.     264     392 ..     264     394 .. 0.91
   2 !  138.8   0.0     2e-43   1.3e-40       1     131 [.     568     699 ..     568     700 .. 0.96

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 4.1e-18
                 EEEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.TTCCCHHHHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel...gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.sgseseeeervvnqLlteldg 95 
                 +l+yGp+GtGK+ll+  + +++   +v ++ + gs  +    ++ + +i++ f+eak+++ ps +++  +d+la++r s+ + + ++++++ L   ++ 
  KKY18331.1 264 LLFYGPKGTGKSLLIDRLSQSCpwrKVVYIGFTGSGTR----EAISTSIQKAFEEAKKNQ-PSLVVVNQLDSLAPKRsSSYAYQASSSIASSLRGGFEA 357
                 69*******************96666778888888888....8899*************9.****************6666889999999999999999 PP

                 TTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEET CS
         AAA  96 vkkkeskvivigatnrpdkldpallr.gRfdrkiei 130
                 +  +  kv+v++ t +p+++d+ l++  Rf ++iei
  KKY18331.1 358 LGGE-TKVLVVAETRHPNDIDESLRSpTRFGIEIEI 392
                 9995.77*************************9998 PP

  == domain 2  score: 138.8 bits;  conditional E-value: 2e-43
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH..TTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr..sgseseeeervvnqLlteldgvk 97 
                 +llyGppG+ KTll+ka+a+e+g +f+ ++g+ells+yvgese+++re+f++a++ + psi+f+DE+da+a++r  s++  +++ +v+ +Ll+e+dg +
  KKY18331.1 568 LLLYGPPGCSKTLLVKALATESGLNFMAVKGAELLSMYVGESERSVREVFRKARAAS-PSIIFFDEVDAIASARgsSEGGGSSGINVLTTLLNEIDGIE 665
                 69*****************************************************99.****************987889999**************** PP

                 TSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  98 kkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 + ++ v+v++atn+p+++dpallr gR+d+ ++++
  KKY18331.1 666 ELKN-VLVVAATNTPQTIDPALLRpGRLDHLLYVG 699
                 *855.************************998875 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.4e-08   9.3e-06       6      33 ..     433     460 ..     428     470 .. 0.87
   2 !   27.1   0.4     4e-09   2.6e-06       4      36 ..     729     761 ..     726     799 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.4e-08
   AAA_lid_3   6 eLAerTeGySGADlaalcreAallAlrr 33 
                 eL e+T+Gy+GADl+al + A+ lA +r
  KKY18331.1 433 ELSEKTHGYTGADLVALMNLAVELAEDR 460
                 899******************9998655 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 4e-09
   AAA_lid_3   4 lkeLAerTeGySGADlaalcreAallAlrrgik 36 
                 ++e+A + +GySGA+++ +c  A+  A++r ++
  KKY18331.1 729 VEEVAYALDGYSGAEIVGICETAGSFAMDRFEE 761
                 789999***********************9654 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   9.1e-06     0.006      10      56 ..     234     293 ..     226     353 .. 0.66
   2 !   11.4   0.0   0.00048      0.32      25      47 ..     566     588 ..     556     602 .. 0.84
   3 ?    1.1   0.0      0.69   4.6e+02     124     149 ..     614     638 ..     607     673 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 9.1e-06
      AAA_16  10 eqLlsale...rvrsgrp..........elvllsGesGvGKsslvrellralekdggifl 56 
                 +q++++++   r+ s++           + +l++G++G+GKs l+++l ++   ++++++
  KKY18331.1 234 QQINRLIRrfgRAPSSSQitlpsyykptQGLLFYGPKGTGKSLLIDRLSQSCPWRKVVYI 293
                 555555544334444443566666666789*******************87666654442 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00048
      AAA_16  25 elvllsGesGvGKsslvrellra 47 
                   +ll+G++G+ K+ lv++l+++
  KKY18331.1 566 KGLLLYGPPGCSKTLLVKALATE 588
                 679****************9975 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.69
      AAA_16 124 krllallsrderplvlvlDdlqwade 149
                 ++ +++++  ++p ++++D+++ + +
  KKY18331.1 614 REVFRKARA-ASPSIIFFDEVDAIAS 638
                 566678888.899*********7766 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.3e-05     0.022       2      46 ..     264     309 ..     263     327 .. 0.82
   2 !   15.0   0.1   2.7e-05     0.018       2      79 ..     568     638 ..     567     688 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.3e-05
                 EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B- CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrre 46 
                 +l  Gp+GtgKs l++rl++    r+v+y+ +t + t+e +  +++
  KKY18331.1 264 LLFYGPKGTGKSLLIDRLSQSCpWRKVVYIGFTGSGTREAISTSIQ 309
                 7999******************888899999998888888877766 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2.7e-05
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--H CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraes 79 
                 +lL GppG+ K+ l++ la   + ++  v + +      l+  +    g+ +++  ++ r+ar  +++i+++DEv+ + s
  KKY18331.1 568 LLLYGPPGCSKTLLVKALATESGLNFMAVKGAE------LLSMYV---GESERSVREVFRKARaaSPSIIFFDEVDAIAS 638
                 89*****************99999999888876......554444...55555557777777778999999999997765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.7e-06    0.0012       8      71 ..     264     329 ..     259     371 .. 0.81
   2 !    8.2   0.0    0.0041       2.8       8      59 ..     568     619 ..     564     626 .. 0.74
   3 ?   -1.0   0.0       2.9   1.9e+03      80     105 ..     614     640 ..     599     665 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.7e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka..........e 71 
                 l+ +G++GtGK++l+ rl ++ +         ++vv++  ++s++++ + + + +a+++ +k+           
  KKY18331.1 264 LLFYGPKGTGKSLLIDRLSQSCP--------WRKVVYIGFTGSGTREAISTSIQKAFEEAKKNqpslvvvnqlD 329
                 6889*****************97........899************************9888844444444331 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0041
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee...erpevvfvtlpsst.sskdllre 59 
                 l+++G++G+ KT+l++ l+ +    +       +++e++++++ +s+ s ++++r+
  KKY18331.1 568 LLLYGPPGCSKTLLVKALATESG-LN---FmavKGAELLSMYVGESErSVREVFRK 619
                 89****************99863.22...134477777777777777677776665 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 2.9
      AAA_22  80 ealeqalraravielliiDEaqhlr..s 105
                 + + + +ra++  +++  DE++ +   +
  KKY18331.1 614 REVFRKARAASP-SIIFFDEVDAIAsaR 640
                 444445555555.9********986551 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.2e-05    0.0079      29      91 ..     257     317 ..     249     321 .. 0.76
   2 !    7.0   0.0    0.0055       3.7      27      56 ..     559     588 ..     554     599 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.2e-05
       AAA_7  29 llknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekrrk 91 
                 + k  + +l++Gp+GtGK+++i +l ++++ +k  ++ i f+ + + + + + i++ +e  +k
  KKY18331.1 257 YYKPTQGLLFYGPKGTGKSLLIDRLSQSCPWRK--VVYIGFTGSGTREAISTSIQKAFEEAKK 317
                 56667889**********************555..5566666667777777777777776665 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0055
       AAA_7  27 elllknkkpvllvGptGtGKtviikdllkk 56 
                 +l l  +k +ll+Gp G++Kt+++k l ++
  KKY18331.1 559 KLNLPPRKGLLLYGPPGCSKTLLVKALATE 588
                 5666778999**************997654 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.089        59      44      68 ..     260     284 ..     252     293 .. 0.86
   2 !   17.6   0.0   4.3e-06    0.0029      43      74 ..     563     594 ..     553     639 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.089
       Rad17  44 kkriLLisGPsGCgkstvvkvLske 68 
                 + + LL  GP G gks  +  Ls+ 
  KKY18331.1 260 PTQGLLFYGPKGTGKSLLIDRLSQS 284
                 56779**************999975 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 4.3e-06
       Rad17  43 rkkriLLisGPsGCgkstvvkvLskelgiklr 74 
                  +++ LL+ GP+GC+k+  vk L+ e g ++ 
  KKY18331.1 563 PPRKGLLLYGPPGCSKTLLVKALATESGLNFM 594
                 456789********************998775 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.53   3.5e+02       5      60 ..     263     311 ..     259     345 .. 0.65
   2 !   20.1   0.0   8.5e-07   0.00056       6     105 ..     568     663 ..     564     678 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.53
                 -EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHT CS
       AAA_2   5 silllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligap 60 
                  +l+ gp+g+Gk++l + l++       +k++ +  +   +    ++ +s  i+++
  KKY18331.1 263 GLLFYGPKGTGKSLLIDRLSQSCPW---RKVVYIGFTGSGT----REAISTSIQKA 311
                 5799**********99999988775...5555555555555....44444444444 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 8.5e-07
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---.----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----..---------HHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle.eeevehlvsrligappgyvgaeegGivllDEidKihpk..essgadvSregVqrdLLq 101
                 +ll gp g+ kt+l kala    +   + ++++ a  l     e+e++v +   ++    +a+   i+++DE+d i++   +s+g   S+ +V++ LL+
  KKY18331.1 568 LLLYGPPGCSKTLLVKALATESGL---NFMAVKGAELLSMyVGESERSVREVFRKA----RAASPSIIFFDEVDAIASArgSSEGGGSSGINVLTTLLN 659
                 57899***************9997...55555555544444456666666665554....345566************99999999************9 PP

                 HHH- CS
       AAA_2 102 ileg 105
                  ++g
  KKY18331.1 660 EIDG 663
                 8886 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0014      0.91       2      20 ..     265     283 ..     264     304 .. 0.86
   2 !    9.3   0.0    0.0021       1.4       2      23 ..     569     590 ..     568     637 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0014
  RNA_helicase   2 wlyGpsgeGKStlakeLak 20 
                   ++yGp+g+GKS+l+++L++
    KKY18331.1 265 LFYGPKGTGKSLLIDRLSQ 283
                   79*************9776 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0021
  RNA_helicase   2 wlyGpsgeGKStlakeLakall 23 
                   +lyGp+g+ K++l+k La++  
    KKY18331.1 569 LLYGPPGCSKTLLVKALATESG 590
                   79**************998754 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.7   1.1e+03      35      50 ..     263     278 ..     258     285 .. 0.80
   2 !   12.0   0.0   0.00019      0.13      32      67 ..     564     599 ..     537     639 .. 0.78
   3 ?    4.9   0.0     0.029        19      22      45 ..     681     704 ..     656     736 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.7
      RuvB_N  35 hvllyGpPGlGkttla 50 
                  +l+yGp G Gk+ l 
  KKY18331.1 263 GLLFYGPKGTGKSLLI 278
                 589*********8775 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00019
      RuvB_N  32 aldhvllyGpPGlGkttlakiiakelgvklkitsgP 67 
                 +   +llyGpPG  kt l k +a+e g ++ +  g 
  KKY18331.1 564 PRKGLLLYGPPGCSKTLLVKALATESGLNFMAVKGA 599
                 55668*********************9999877765 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.029
      RuvB_N  22 fieaakkreealdhvllyGpPGlG 45 
                 +i+ a  r   ldh+l +GpP l 
  KKY18331.1 681 TIDPALLRPGRLDHLLYVGPPDLE 704
                 4777889999***********985 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0013      0.88      25      44 ..     264     283 ..     260     290 .. 0.88
   2 !    8.7   0.1    0.0015         1      24      43 ..     567     586 ..     557     597 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0013
  Mg_chelatase  25 lllvGppGsGKtmlakrlps 44 
                   ll++Gp G+GK++l+ rl++
    KKY18331.1 264 LLFYGPKGTGKSLLIDRLSQ 283
                   89***************986 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0015
  Mg_chelatase  24 nlllvGppGsGKtmlakrlp 43 
                    lll+GppG+ Kt+l k+l+
    KKY18331.1 567 GLLLYGPPGCSKTLLVKALA 586
                   59**************9986 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   4.3e-05     0.028      37     176 ..     264     405 ..     252     412 .. 0.72
   2 ?    3.1   0.0      0.11        73      37      61 ..     568     592 ..     555     723 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.3e-05
                 EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEE.HHHHHHHHHHHHHTT-HHHHHHHHT.T-SEEEEE-GGGGTT-HH..........HHHHHHHHH CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlenapelrvvYlt.aeeFlnelvkalrdkkaeefkeklr.kvDvLliDDiqflagkek..........tqeelfhtf 123
                 l++yg+ G Gk  L++     + ++ p  +vvY+  + + ++e+++   ++ +++f e  + +  +++++ +  la k +          +   l   f
  KKY18331.1 264 LLFYGPKGTGKSLLIDR----LSQSCPWRKVVYIGfTGSGTREAIS---TSIQKAFEEAKKnQPSLVVVNQLDSLAPKRSssyayqasssIASSLRGGF 355
                 899********999875....56788999****9623344444444...3333444443331345666777777777754111111111156677788* PP

                 HHHHTTT-EEEEEESS-TTT-SS--HHHHHHHHSSEEEE-----HHHHHHHHH CS
    Bac_DnaA 124 nalleegkqvvlssDrsPkeleeledrlrsrfeaGlvvdieppdletrlailk 176
                 +al +e k +v++  r+P++   +++ lrs  + G+ ++i  p  + rl+ilk
  KKY18331.1 356 EALGGETKVLVVAETRHPND---IDESLRSPTRFGIEIEIAVPSANGRLEILK 405
                 ******************76...6899************************97 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
                 EEEE-SSSSSHHHHHHHHHHHHHHH CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlen 61 
                 l++yg+ G  kt L+ka++ e   n
  KKY18331.1 568 LLLYGPPGCSKTLLVKALATESGLN 592
                 89***************99775444 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0089       5.9       6      61 ..     265     317 ..     261     328 .. 0.73
   2 !    9.6   0.0    0.0013      0.87       3      78 ..     566     638 ..     564     668 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0089
      AAA_14   6 vitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklk 61 
                 +  G++ +GK+ l+ +l ++   + ++++yi +    ++++  ++++ +++ e  k
  KKY18331.1 265 LFYGPKGTGKSLLIDRLSQSC--PWRKVVYIGFTGSGTREAI-STSIQKAFEEAKK 317
                 678***********9998554..699*****99998876644.3356677766533 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0013
      AAA_14   3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe.kllelileklkeekktylflDEiqevpe 78 
                 k l++ G+  + KT l+k l+ e+     +++ ++  +       ++e ++ e++++  ++   +++f+DE+  + +
  KKY18331.1 566 KGLLLYGPPGCSKTLLVKALATESG---LNFMAVKGAELLSMYVGESErSVREVFRKA-RAASPSIIFFDEVDAIAS 638
                 568999***************9998...667776666655544444442455666665.345889*******98865 PP

>> CDC48_N  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   5.9e-06    0.0039      16      84 ..      25      98 ..      15      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 5.9e-06
                EEEE-HHHHHHHTS-TTSEEEE......ECCCCEEEEEEEBSTTSTTTTEEEE-HHHHHHHT--TTEEEEEEEE- CS
     CDC48_N 16 ivridpedmeelglepgdvvei......egkrkTvaivwpaepedegkgiIrmdgvtRknagvsiGdkVtVrkae 84
                +v  +p+++  l+l+pgd  +i       g+r++ ai+w+a+++  ++ +++ ++ + +  g+++GdkV V++++
  KKY18331.1 25 RVHFSPSALVLLKLKPGDLCQIctsdedDGRRSSTAIAWTAAEK-IQETVVQTSKTLQEIYGLRLGDKVDVEPYD 98
                677788889999999999998866655457888********988.55*************************985 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00014     0.092      17      90 ..     264     339 ..     259     353 .. 0.84
   2 ?    2.9   0.0      0.11        76      18      65 ..     569     622 ..     565     648 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00014
                  EEEEESTTSSHHHHHHHHHHHSSTSS..EEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  17 tlipgafgvGktvisqslskqsnsdd..aiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareasi 90 
                  +l  g +g+Gk+ +++ ls+ +  ++  +i + g G r+   +++ + f+e++  + + +v+n+ ++ + +r  s 
   KKY18331.1 264 LLFYGPKGTGKSLLIDRLSQSCPWRKvvYIGFTGSGTREAISTSIQKAFEEAKKNQPSLVVVNQLDSLAPKRSSSY 339
                  567899***************9888542333678899999999***********************9999998764 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.11
                  EEEESTTSSHHHHHHHHHHHSSTS......SEEEEEEESEEHHHHHHHHHHCHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  18 lipgafgvGktvisqslskqsnsd......daiiyvgiGergnevaevleefpe 65 
                  l+ g  g+ kt ++++l+ +s  +           + +Ge +++v+ev+++ + 
   KKY18331.1 569 LLYGPPGCSKTLLVKALATESGLNfmavkgAELLSMYVGESERSVREVFRKARA 622
                  678999**************9877777754356666799999999999887654 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0031         2       3      24 ..     265     286 ..     264     349 .. 0.90
   2 ?    6.8   0.0      0.01         7       3      39 ..     569     607 ..     568     639 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0031
      AAA_33   3 llvGlpGsGKstlaerllkklg 24 
                 l+ G++G+GKs l++rl +  +
  KKY18331.1 265 LFYGPKGTGKSLLIDRLSQSCP 286
                 799**************99877 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.01
      AAA_33   3 llvGlpGsGKstlaerllkklg..avllssdtlrrrlfg 39 
                 ll G+pG+ K+ l++ l+ + g  +  +   +l+++++g
  KKY18331.1 569 LLYGPPGCSKTLLVKALATESGlnFMAVKGAELLSMYVG 607
                 688***************999977655655555555555 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0074       4.9      23      70 ..     264     309 ..     257     367 .. 0.63
   2 ?    5.1   0.0     0.028        19      19      43 ..     564     588 ..     557     597 .. 0.83
   3 ?   -0.9   0.0         2   1.3e+03     115     132 ..     618     638 ..     593     696 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0074
    ATPase_2  23 yfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefie 70 
                 ++ YGp+g GK+ L+ ++ +       +v+y+    +   + ++++i+
  KKY18331.1 264 LLFYGPKGTGKSLLIDRLSQSCPW-R-KVVYIGFTGSGTREAISTSIQ 309
                 567************998887722.2.344443333333333333333 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.028
    ATPase_2  19 pneiyfiYGpegsGKtaLlkeiien 43 
                 p++ +++YGp g+ Kt L+k ++++
  KKY18331.1 564 PRKGLLLYGPPGCSKTLLVKALATE 588
                 5666899*************98876 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 2
    ATPase_2 115 kkgkk...iiiiiDelqklid 132
                 +k++     ii++De+  + +
  KKY18331.1 618 RKARAaspSIIFFDEVDAIAS 638
                 3333345579999**998873 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.33   2.2e+02      51      86 ..     262     298 ..     259     314 .. 0.80
   2 !   11.6   0.0   0.00017      0.11      51     106 ..     566     620 ..     556     623 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.33
                 XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelg.edvpfvalsgs 86 
                 +++L+ Gp+gtGk+ l   +s++   ++v ++ ++gs
  KKY18331.1 262 QGLLFYGPKGTGKSLLIDRLSQSCPwRKVVYIGFTGS 298
                 689***********99999999987778877777776 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00017
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkkte.vltqalrks 106
                 +++Ll Gp+g  kt l  a++ e g  + f+a++g+e+ s+ v  +e  + + +rk+
  KKY18331.1 566 KGLLLYGPPGCSKTLLVKALATESG--LNFMAVKGAELLSMYVGESErSVREVFRKA 620
                 89********************987..99**************99993477889987 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0076       5.1      12      70 ..     262     331 ..     256     378 .. 0.68
   2 ?    6.0   0.0     0.024        16       5      34 ..     559     588 ..     556     620 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0076
                 SEEEEEESTTSSHHHHHHHHTTSS--.........SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
    ABC_tran  12 ekvaivGenGaGKStLlkllagllkp.........teGeilldgkdlke..qeleslrkeigvlpqepql 70 
                 + + + G+ G+GKS L+  l++   +          +G+ +  ++++++  +e ++ + ++ v+ q ++l
  KKY18331.1 262 QGLLFYGPKGTGKSLLIDRLSQSCPWrkvvyigftGSGTREAISTSIQKafEEAKKNQPSLVVVNQLDSL 331
                 667789**************99988854444444322222333444444444455555555555555444 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.024
                 EEEEETTSEEEEEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   5 slklkegekvaivGenGaGKStLlkllagl 34 
                 +l+l + + + + G+ G+ K+ L+k+la +
  KKY18331.1 559 KLNLPPRKGLLLYGPPGCSKTLLVKALATE 588
                 67888899999****************987 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.022        15       4      22 ..     266     284 ..     264     323 .. 0.82
   2 ?    7.4   0.0     0.007       4.7       4      38 ..     570     609 ..     568     639 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.022
      AAA_28   4 itGgestGKTtlleaLaar 22 
                 + G+ +tGK+ l+ +L++ 
  KKY18331.1 266 FYGPKGTGKSLLIDRLSQS 284
                 78**************975 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.007
      AAA_28   4 itGgestGKTtlleaLaar...gypvv..pEaareileek 38 
                 + G++++ KT l++aLa +   ++  v  +E   +++ e 
  KKY18331.1 570 LYGPPGCSKTLLVKALATEsglNFMAVkgAELLSMYVGES 609
                 78***************77644444444555555555444 PP

>> LIFR_D2  Leukemia inhibitory factor receptor D2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   4.6e-05      0.03      30     106 ..      98     172 ..      91     178 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.6e-05
     LIFR_D2  30 kgsalpeklnviweikvlrkeklelvalvtynttlagkdtvlhWnWtsdlPlectshsvrirsyidevkfsGkkeWs 106
                 +gs +pe ++v  +i+  +k +  +  +    +  a +++  hW+W  dlPl  +      rs + + + +G+k+W 
  KKY18331.1  98 DGSKIPEATTVWLKIHASQKPSSSVSGTGGGASESADENEKTHWEWYLDLPLGRAEKL--ARSMVFDAELKGQKKWF 172
                 58999****************999999999999999****************988775..477888899*****995 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.014         9      41      68 ..     255     282 ..     240     296 .. 0.83
   2 ?    6.3   0.0     0.011       7.4      47      70 ..     565     588 ..     554     622 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.014
   IstB_IS21  41 lsfiekkenivllGpsGvGKshlaialg 68 
                  s+ +  +++++ Gp G+GKs l   l+
  KKY18331.1 255 PSYYKPTQGLLFYGPKGTGKSLLIDRLS 282
                 577888999************9976665 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.011
   IstB_IS21  47 kenivllGpsGvGKshlaialgve 70 
                 +++++l Gp+G  K+ l  al++e
  KKY18331.1 565 RKGLLLYGPPGCSKTLLVKALATE 588
                 56899****************987 PP

>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00017      0.11      59      96 ..     258     295 ..     231     317 .. 0.88
   2 ?   -0.2   0.0      0.54   3.6e+02      60      80 ..     563     583 ..     539     588 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
  AFG1_ATPase  59 vepvrglYlwGgvGrGKtylmdlffeslpvekkrrvhf 96 
                   +p++gl ++G+ G GK+ l+d   +s p +k   + f
   KKY18331.1 258 YKPTQGLLFYGPKGTGKSLLIDRLSQSCPWRKVVYIGF 295
                  5799*************************988766655 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.54
  AFG1_ATPase  60 epvrglYlwGgvGrGKtylmd 80 
                   p +gl l+G+ G  Kt l+ 
   KKY18331.1 563 PPRKGLLLYGPPGCSKTLLVK 583
                  4789*************9986 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0      0.01       6.8      51      76 ..     259     284 ..     227     324 .. 0.91
   2 ?   -0.4   0.0      0.81   5.4e+02     169     208 ..     369     408 ..     356     424 .. 0.79
   3 ?    4.4   0.0     0.027        18      54      83 ..     566     592 ..     539     633 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.01
      DUF815  51 lpannvLLwGarGtGKSslvkallne 76 
                 +p++ +L++G +GtGKS l+  l ++
  KKY18331.1 259 KPTQGLLFYGPKGTGKSLLIDRLSQS 284
                 577889************99877765 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.81
      DUF815 169 eihaseaveeklsLsdRFGlwlgFykldqeeYleivekla 208
                 e ++ + ++e l    RFG+ +    ++ +  lei++ + 
  KKY18331.1 369 ETRHPNDIDESLRSPTRFGIEIEIAVPSANGRLEILKVIR 408
                 555666789999999*********9999999999988765 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.027
      DUF815  54 nnvLLwGarGtGKSslvkallneyaeegLr 83 
                 + +LL+G  G+ K  lvkal +e    gL 
  KKY18331.1 566 KGLLLYGPPGCSKTLLVKALATES---GLN 592
                 568*****************9875...344 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00048      0.32      22      41 ..     262     280 ..     256     283 .. 0.84
   2 ?   -0.2   0.0       1.3   8.3e+02      21      43 ..     565     586 ..     556     587 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00048
      AAA_29  22 kgatlltGpsGsGKSTllDA 41 
                 +g  l+ Gp G+GKS l+D 
  KKY18331.1 262 QG-LLFYGPKGTGKSLLIDR 280
                 45.9***************5 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.3
      AAA_29  21 lkgatlltGpsGsGKSTllDAiq 43 
                 +kg  ll Gp G  K+ l+ A++
  KKY18331.1 565 RKG-LLLYGPPGCSKTLLVKALA 586
                 345.9**********99998876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.078        52      37      54 ..     265     282 ..     253     321 .. 0.87
   2 ?   -2.0   0.0       3.4   2.3e+03     127     157 ..     305     334 ..     287     353 .. 0.73
   3 ?    6.0   0.1     0.012       7.8      30      55 ..     562     587 ..     544     622 .. 0.82
   4 ?   -1.6   0.0       2.6   1.7e+03     128     174 ..     611     663 ..     588     675 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.078
      AAA_25  37 llaGapgtGKttlaldla 54 
                 l++G+ gtGK+ l   l+
  KKY18331.1 265 LFYGPKGTGKSLLIDRLS 282
                 789********9987665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.4
      AAA_25 127 tadvdaleaaieevegvrlvviDplsralgg 157
                    +++  +++++ +++ lvv+  l+++ + 
  KKY18331.1 305 STSIQKAFEEAKK-NQPSLVVVNQLDSLAPK 334
                 4556777788888.78999999988887776 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.012
      AAA_25  30 lpagelallaGapgtGKttlaldlal 55 
                 lp  +  ll+G+pg+ Kt l+  la 
  KKY18331.1 562 LPPRKGLLLYGPPGCSKTLLVKALAT 587
                 56677789***********9988775 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 2.6
      AAA_25 128 advdaleaaieevegvrlvviDplsralggdensnsd......v.galvealer 174
                 + v+++ +++++ + +  + +D ++++ ++   s+        v + l++ ++ 
  KKY18331.1 611 RSVREVFRKARA-ASPSIIFFDEVDAIASARGSSEGGgssginVlTTLLNEIDG 663
                 567888999999.77999999999998887544444422344423555555555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0044       2.9       5      44 ..     264     309 ..     261     366 .. 0.76
   2 ?    1.3   0.0      0.37   2.4e+02       5      22 ..     568     585 ..     565     639 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0044
      AAA_24   5 iliyGpsgiGKTtlakel.....gpkplfidtek.Glksldadkfp 44 
                 +l yGp g+GK+ l+ +l       k+++i + + G+++   + ++
  KKY18331.1 264 LLFYGPKGTGKSLLIDRLsqscpWRKVVYIGFTGsGTREAISTSIQ 309
                 578***************9998888888888877666555555444 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.37
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +l+yGp+g  KT l+k l
  KKY18331.1 568 LLLYGPPGCSKTLLVKAL 585
                 68************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.82u 0.36s 00:00:01.18 Elapsed: 00:00:00.50
# Mc/sec: 4835.43
//
Query:       KKY18332.1  [L=168]
Description: hypothetical protein UCRPC4_g05044 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00011   22.1   4.2    0.00011   22.1   4.2    1.6  1  PAN_1     PAN domain
  ------ inclusion threshold ------
      0.021   14.7   1.2      0.049   13.5   1.2    1.6  1  PAN_4     PAN domain
      0.052   13.4   1.7       0.15   11.9   1.7    1.8  1  PAN_3     PAN-like domain
       0.62    8.1   6.2       0.71    7.9   6.2    1.0  1  FSA_C     Fragile site-associated protein C-terminus


Domain annotation for each model (and alignments):
>> PAN_1  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   4.2   2.4e-08   0.00011      22      60 ..     104     140 ..      83     163 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.4e-08
                 SSHHHHHHHHHHSTTS--SEEEEETTTTEEEEEESSSSS CS
       PAN_1  22 dsaeeCaerCseekkfrCrsftfnnstkeCylksedkts 60 
                 +s  +C++ C++++   C++++f++st+ C  +  +  +
  KKY18332.1 104 SSFLDCQTYCFFDTP--CQAYSFDPSTQVCNTYITTIDV 140
                 46779*********9..*************988777666 PP

>> PAN_4  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.2   1.1e-05     0.049      16      39 ..     104     127 ..      91     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.1e-05
       PAN_4  16 dspeaCcaaCaadsnCnawvyvkp 39 
                 +s  +C+ +C  d+ C+a+++  +
  KKY18332.1 104 SSFLDCQTYCFFDTPCQAYSFDPS 127
                 67789****************986 PP

>> PAN_3  PAN-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.7   3.4e-05      0.15      17      48 ..     101     134 ..      89     146 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.4e-05
       PAN_3  17 ttseswddCvqkCledstCilaykn..senCtlf 48 
                 +t  s+ dC ++C+ d+ C + +++  +++C+ +
  KKY18332.1 101 KTESSFLDCQTYCFFDTPCQAYSFDpsTQVCNTY 134
                 5778999******************98889*998 PP

>> FSA_C  Fragile site-associated protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   6.2   0.00016      0.71     545     643 ..      23     127 ..      11     139 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00016
       FSA_C 545 msaakssles.lqgsqdsiaiattasa.velndatsstiasaatasslsstkstvtivv.....stndskdgaklgpdtatpsf.dlesfvrdwrhfec 635
                 ++a +ss++s l  + +    ++t+++ +++  +++st  + + +s+++st+  +++ v      +  s  +akl    + +sf d +++   +    c
  KKY18332.1  23 LAAPQSSVSSgLVVTATVYPPSQTGATtTTVTASSTSTALTNSVSSTVNSTDHAIKTLVdcnveGVASSSMAAKLRHAKTESSFlDCQTY--CFFDTPC 119
                 556666766524444444445555544044555555566677888888999888888873222222334455555544333333133333..3334457 PP

       FSA_C 636 ktwhlept 643
                 +++ ++p+
  KKY18332.1 120 QAYSFDPS 127
                 77776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1185  (0.066094); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1100.36
//
Query:       KKY18333.1  [L=352]
Description: putative pyruvate dehydrogenase e1 component subunit beta [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-46  158.9   0.0    1.5e-46  158.3   0.0    1.3  1  Transket_pyr     Transketolase, pyrimidine binding domain
    8.6e-35  119.3   0.2    2.9e-34  117.6   0.1    1.9  2  Transketolase_C  Transketolase, C-terminal domain
  ------ inclusion threshold ------
       0.02   14.5   0.2       0.56    9.9   0.1    2.4  2  GntR             Bacterial regulatory proteins, gntR family
       0.14   11.9   0.0       0.25   11.0   0.0    1.3  1  DUF460           Protein of unknown function (DUF460)
       0.17   12.3   0.0       0.44   11.0   0.0    1.7  2  FtsA             Cell division protein FtsA


Domain annotation for each model (and alignments):
>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.3   0.0   4.1e-50   1.5e-46       2     176 ..      25     200 ..      24     202 .. 0.98

  Alignments for each domain:
  == domain 1  score: 158.3 bits;  conditional E-value: 4.1e-50
                   EEEHHHHHHHHHHHHHCTTTTEEEEESSTH..HHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGG..HHGGHH CS
  Transket_pyr   2 kiawrkaeaealaellkedpevvligaDva..ggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagpllviveaqFgdFangA..qiyadq 94 
                   ++++r+a++ealae+l+++p+v+++g++va  +g ++v+kgll+ +g++r+ids+i+E++++g  vGaal+g l +++e++ ++Fa++A  qi++++
    KKY18333.1  25 EMTVRDALNEALAEELEANPKVFVLGEEVAqyNGAYKVTKGLLDRFGPKRIIDSPITESGFAGLTVGAALNG-LHPVCEFMTFNFAMQAidQIINSA 120
                   789***************************99****************************************.9*********************** PP

                   HHHCHHHHHT--EEEEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC CS
  Transket_pyr  95 airsgeakgklkvgvvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksllr 176
                   a+++++++g +++++++r p g+    ++++s+   a++ +ipglkvv+P +++++k+ll++air  d++Pv++++++ l+ 
    KKY18333.1 121 AKTHYMSGGIQPCNITFRGPNGFAAGVAAQHSQDYSAWYGSIPGLKVVTPWSAEDAKGLLKAAIR--DPNPVCVLENELLYG 200
                   *****************************************************************..99********99986 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.85   3.1e+03      73      97 ..      25      45 ..      17      63 .. 0.58
   2 !  117.6   0.1   8.1e-38   2.9e-34       1     124 []     219     342 ..     219     342 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.85
                     TTSHHHHHHHHHHHCCCTTCSSEEE CS
  Transketolase_C 73 rgGigsevaaalaeeafdgldapvk 97
                     ++ + +++++alae    +l+a  k
       KKY18333.1 25 EMTVRDALNEALAE----ELEANPK 45
                     44444455555555....5555544 PP

  == domain 2  score: 117.6 bits;  conditional E-value: 8.1e-38
                      TEEEEEETTSSEEEEEETTHHHHHHHHHHHHHTT.TTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCS CS
  Transketolase_C   1 gkaeilregkdvtlvayGsmveealeAaeeLeke.gisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdgld 93 
                      gka+i+r gkd+t+v+ ++ v ++l+AaeeL+++ g++aeV++lr++kp+D e i +s+kktgrl+vve + + +G+g+e++a+ +e afd+l+
       KKY18333.1 219 GKAKIERVGKDLTIVTLSRCVGQSLAAAEELKQKyGVDAEVLNLRSIKPMDVEAIVKSIKKTGRLLVVESGFPAFGVGAEILALSMEYAFDYLE 312
                      89*******************************9************************************************************ PP

                      SEEEEEEE-SSSSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C  94 apvkrvggpdviepgsaeelekafgldaeki 124
                      ap  r++g +v++p++ ++le++  ++++ i
       KKY18333.1 313 APGARITGAEVPTPYA-AKLEEMSFPQVDTI 342
                      ****************.88*******99977 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00016      0.56      25      52 ..      12      39 ..       8      41 .. 0.86
   2 ?    1.9   0.0     0.049   1.8e+02      21      41 ..     240     260 ..     231     281 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00016
                --HHHHHHHHTS-HHHHHHHHHHHHHTT CS
        GntR 25 PsereLaaefgVsrttvReALrrLeaeg 52
                P+ r+ a+  gV+ +tvR AL++  ae 
  KKY18333.1 12 PRIRSYATPSGVKEMTVRDALNEALAEE 39
                8888889999************987765 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.049
                 TSB---HHHHHHHHTS-HHHH CS
        GntR  21 GdkLPsereLaaefgVsrttv 41 
                 G+ L + +eL +++gV++ ++
  KKY18333.1 240 GQSLAAAEELKQKYGVDAEVL 260
                 78888899********99877 PP

>> DUF460  Protein of unknown function (DUF460)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.1e-05      0.25      49      80 ..     255     286 ..     253     292 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.1e-05
      DUF460  49 ldgevlalkssreldreevieliselGkpviv 80 
                 +d+evl+l+s + +d e +++ i+++G+ ++v
  KKY18333.1 255 VDAEVLNLRSIKPMDVEAIVKSIKKTGRLLVV 286
                 689*************************9998 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.4     5e+03      75      84 ..     110     119 ..      32     148 .. 0.63
   2 ?   11.0   0.0   0.00012      0.44      25      61 ..     215     267 ..     207     343 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.4
                 STTHHHHHHH CS
                 xxxxxxxxxx RF
        FtsA  75 lpnleelaer 84 
                 ++ +++++++
  KKY18333.1 110 MQAIDQIINS 119
                 3333333333 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00012
                 EES--HHHHHHH........HHHHHT--HHHHHHHHHHH--S--........E CS
                 xxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxx........x RF
        FtsA  25 vigvggngitkd........iakalrtaveeAerikikyGsala........e 61 
                 vi++g   i +         +++++++++++Ae++k kyG+  +        +
  KKY18333.1 215 VIPFGKAKIERVgkdltivtLSRCVGQSLAAAEELKQKYGVDAEvlnlrsikP 267
                 67886666666666699999********************9666555444441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.51
# Mc/sec: 2083.62
//
Query:       KKY18334.1  [L=346]
Description: hypothetical protein UCRPC4_g05046 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   11.9   0.3        1.7    8.9   0.1    2.8  2  LRR_6     Leucine Rich repeat
        1.3    9.6   8.5         56    4.3   0.7    4.5  5  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00018       1.7       1      17 [.     190     207 ..     190     209 .. 0.90
   2 ?   -1.7   0.0      0.48   4.3e+03       2      12 ..     220     230 ..     219     230 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00018
       LRR_6   1 snthLteLdLsgNd.IgD 17 
                 ++++L++L+L++N  ++D
  KKY18334.1 190 HSPTLESLSLTSNTtLSD 207
                 789**********98888 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.48
       LRR_6   2 nthLteLdLsg 12 
                 ++++ +LdL++
  KKY18334.1 220 SPSISTLDLAF 230
                 678899**985 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.065   5.8e+02       7      33 ..      76     101 ..      71     111 .. 0.70
   2 ?    4.3   0.1    0.0067        60      16      31 ..     110     125 ..      91     132 .. 0.76
   3 ?    4.3   0.7    0.0063        56       9      37 ..     179     206 ..     176     215 .. 0.70
   4 ?    3.5   1.3     0.011     1e+02       1      30 [.     192     228 ..     192     238 .. 0.64
   5 ?   -0.1   0.0      0.15   1.4e+03      21      32 ..     277     289 ..     268     310 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.065
                 E--..SS---E-S-HHH-TT--EEE-.-S CS
       LRR_4   7 dLs..nNqltdiplleklpnLkeLdLsgN 33 
                  L    + lt ++    +++L+ ++ sg+
  KKY18334.1  76 RLDieKCPLTFLSH---FKSLRCFHFSGF 101
                 44444788888777...888888777776 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0067
                 -S-HHH-TT--EEE-. CS
       LRR_4  16 iplleklpnLkeLdLs 31 
                 +  l++lp+L++L ++
  KKY18334.1 110 LRILNSLPQLQHLKIT 125
                 445778*******985 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.0063
                 -SS---E-S-HHH-TT--EEE-.-S---- CS
       LRR_4   9 snNqltdiplleklpnLkeLdLsgNnlit 37 
                 s+ +l+++ +    p L++L+L++N+ ++
  KKY18334.1 179 SSAMLQSLTSTH-SPTLESLSLTSNTTLS 206
                 555666666655.6889999998886553 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.011
                 SS--EEE--SS-.....--.E-S-.HHH-TT--EEE- CS
       LRR_4   1 pnLevLdLsnNq.....lt.dipl.leklpnLkeLdL 30 
                 p Le+L+L +N      +t  i+l l + p+  +LdL
  KKY18334.1 192 PTLESLSLTSNTtlsdpITyQINLlLTSSPSISTLDL 228
                 5688888886544555555444444446777888887 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.15
                 H.-TT--EEE-.- CS
       LRR_4  21 k.lpnLkeLdLsg 32 
                 + l +L+eL L++
  KKY18334.1 277 SeLCKLRELCLWR 289
                 3388899987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 2191.81
//
Query:       KKY18335.1  [L=168]
Description: putative c2h2 finger domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-06   28.9   4.5    1.8e-06   28.0   4.5    1.5  1  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
     0.0025   18.2   0.7     0.0042   17.4   0.7    1.4  1  zf-met       Zinc-finger of C2H2 type
  ------ inclusion threshold ------
      0.034   14.6   0.8      0.081   13.4   0.8    1.7  1  zf-C2H2      Zinc finger, C2H2 type
        0.1   13.5   0.3       0.24   12.3   0.3    1.7  1  zf-C2H2_4    C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   4.5   4.1e-10   1.8e-06       2      27 .]      23      50 ..      22      50 .. 0.97

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 4.1e-10
                 CBBTTTTBBBSSHHHHHCCTTS..HHHH CS
  zf-C2H2_jaz  2 fYCvlCdKyFksenaldnHlkS..KkHK 27
                 f+C lC+K ++ +n +++H++S  ++HK
   KKY18335.1 23 FFCTLCQKGYSRQNEFEAHESSydHQHK 50
                 9**************************9 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.7   9.5e-07    0.0042       1      22 [.      23      44 ..      23      44 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 9.5e-07
      zf-met  1 fyCelCnvtfnsesqlksHlqG 22
                f+C lC++ ++ ++ +++H  +
  KKY18335.1 23 FFCTLCQKGYSRQNEFEAHESS 44
                89*****************976 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.8   1.8e-05     0.081       1      22 [.      23      44 ..      23      47 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.8e-05
                EEETTTTEEESSHHHHHHHHHC CS
     zf-C2H2  1 ykCpdCgksFkrksnLkrHirt 22
                + C+ C k ++r+ ++++H ++
  KKY18335.1 23 FFCTLCQKGYSRQNEFEAHESS 44
                78*****************876 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   5.4e-05      0.24       1      21 [.      23      43 ..      23      46 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.4e-05
   zf-C2H2_4  1 fkCpiCgksFsskkaLlrHlk 21
                f C++C+k +s+++++  H  
  KKY18335.1 23 FFCTLCQKGYSRQNEFEAHES 43
                78*****************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1876  (0.104635); expected 358.6 (0.02)
Passed bias filter:                      955  (0.0532657); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 1035.75
//
Query:       KKY18336.1  [L=279]
Description: putative ubiquitin-conjugating enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-22   77.4   0.1    1.2e-21   76.9   0.1    1.2  1  UQ_con     Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
      0.078   12.7   0.0       0.11   12.2   0.0    1.4  1  Prok-E2_B  Prokaryotic E2 family B


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.1   1.3e-25   1.2e-21       1     114 [.       9     121 ..       9     141 .. 0.89

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 1.3e-25
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGG..GSTTT--TTSHH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldi..LkeekWspaltl 97 
                 rl++e+++++k++p+ i a+++++ n+ ew+ +++gp++tpYegg +  +l fp+dYP+ pP +++ t+      ++s ++cl+i  ++ ++W+pa+t+
  KKY18336.1   9 RLTREYQDIQKNPPPYIVAHPSEN-NILEWHYILTGPPNTPYEGGQYWGSLVFPSDYPFAPPAIRMHTPS--GRFQPSTRLCLSIsdFHPKQWNPAWTV 104
                 799********************7.****************************************99854..5677899****996677888******* PP

                 HHHHHHHHHHHHS--TT CS
      UQ_con  98 esvllsiqsLlaepnpe 114
                 +++l+ ++s++++ + +
  KKY18336.1 105 STALVGLLSFMTSEEIT 121
                 *********99776544 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.2e-05      0.11      34      98 ..      50     108 ..       8     146 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.2e-05
   Prok-E2_B  34 sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLClleeeldldewdpngsvadvl 98 
                 +gg++   lv+p ++p++ppa++   p+ +      ++ +  LCl      + +w+p+ +v  +l
  KKY18336.1  50 EGGQYWGSLVFPSDYPFAPPAIRMHTPSGR-----FQP-STRLCLSISDFHPKQWNPAWTVSTAL 108
                 67777778*******************944.....566.78999976699999999988776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 1719.32
//
Query:       KKY18337.1  [L=517]
Description: putative outer membrane omp85 family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-42  144.2   0.9    8.7e-42  143.8   0.9    1.2  1  Bac_surface_Ag  Surface antigen


Domain annotation for each model (and alignments):
>> Bac_surface_Ag  Surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.8   0.9   4.8e-46   8.7e-42       1     324 []     172     516 ..     172     516 .. 0.87

  Alignments for each domain:
  == domain 1  score: 143.8 bits;  conditional E-value: 4.8e-46
                     STSSSS-EEEEEEEESS.SEEEEEEEEEESTSSTTS-EEEEEEEEEEGGGTBS.S-EEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEES---BH CS
  Bac_surface_Ag   1 NllGtGqslslsaslgs.yeqslnlsftePyflgdrvslglslfaresdsdesdsyrtksvgfsvslgrpltenyslslglsvqknkilkdssse 94 
                     N++G ++sl+l+aslg+  +++++  f+ P + +++  + l +  + s +++++s+++   g+ +++ +  ++ +   +g++ +  +++    ++
      KKY18337.1 172 NVFGGAESLNLNASLGTrTRSAYQGVFSTPILSNPDFLFELGALQS-STTKSWASHEELLRGGWSKFRYLTSSGSIHEFGYNGYWRQLTGLAVNA 265
                     99**************988888999999998865555555544443.788888888888888888888888888888899999999999888888 PP

                     HHHHHHHSCS--EEEEEEEEEEEEEEEEEESSSSS-SSEEEEEEEEEEE-...TTSSS-EEEEEEEEEEEEESSTTSSSEEEEEEEEEEEEESS. CS
  Bac_surface_Ag  95 nnrnvssasklqtgksltsslslslsydtrddalfPtrGvllklrleftg.pllggdvsylkldakasyyvpltkekdlvlaarvalgyisgyg. 187
                     ++        +++g+s +ss+s+ ++ d rd++ +P++G+l+k+++e++g ++l gdv ++k++ + s+ +p+   + +  ++ +++  +++ g 
      KKY18337.1 266 SPTV-----RNEAGDSVKSSISHVWVQDRRDNPTLPSSGYLAKTTNEIAGwGPLKGDVAFWKSELESSTALPIPI-PGIKGPSGITFTTGFRAGl 354
                     7773.....689**************************************9*********************984.5555555555555555555 PP

                     ..........SS-.--GGG-B-BSSTTSSTEE-TT-BS-EEEEEEE--BSEEEEEEEEEEEE-SSS-GGTTEEEEEEEEEEEEE-TT--TTTTTT CS
  Bac_surface_Ag 188 ..........tkdelpfyerFyaGGsnsvRGfesgglgprdesgdalGGdsyavaslElrfplpflkkqnsvrlalFfDaGnvwdkegqspsssr 272
                               t +  ++++rF++GG + vRGf+  glgprd  +dalGGd ya +s+ l fplp +  ++ +rl++F++ G ++  ++ +++++ 
      KKY18337.1 355 lyplaldgkaTPESSRINDRFQLGGPTDVRGFRLSGLGPRDG-SDALGGDVYAAGSANLLFPLPRVGAERPLRLQAFVNGGRLLALKNVQKDKEG 448
                     566679999977779**************************8.************************8889***********9999999888888 PP

                     S--TT...............TS-EEEEEEEEEEEETTEEEEEEEEEEEE-STT--EE.SEEEEECEEE CS
  Bac_surface_Ag 273 sasst...............aeirasvGvgLrwqsPlGPlrfdyAiplkkedgdktq.rFqFgiGttF 324
                      ++s+                   +s+GvgL++++P++++++++  pl  ++g++ + ++q giG  F
      KKY18337.1 449 PTTSEdirnsviktinevgnGLPSMSAGVGLVYAHPVARFELNFSLPLVLRKGEEGRkGLQLGIGINF 516
                     7777799999*********9999*************************9999955555*******988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.53
# Mc/sec: 2936.03
//
Query:       KKY18338.1  [L=269]
Description: putative inositol monophosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-63  213.0   0.0    6.9e-63  212.7   0.0    1.0  1  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.7   0.0   3.9e-67   6.9e-63      37     270 ..       9     260 ..       2     262 .. 0.88

  Alignments for each domain:
  == domain 1  score: 212.7 bits;  conditional E-value: 3.9e-67
                 CHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCCCT.SSSSSEEEEEEEEETHHHHHHT-SG-EEEEEEEETTEEEEEEEEETTTTEEECEE CS
  Inositol_P  37 egeedlvtaadeaveelilealaekfpshkilgeetlakgekseltedgltwivDPiDGTknFvrgipqvaVsigllvegkpvlGviaqPllgqlysaa 135
                 + ++dlvt++d+ave+++ ++l  k+p+ ++lgeet+++g   +lt++ +t++vDPiDGT+nFv+++p+v +s+g++ +++pv+Gv+ +P+++qly+++
  KKY18338.1   9 DDAADLVTETDRAVEKMVSTTLMSKYPTFSFLGEETYKPGM--KLTSS-PTFVVDPIDGTTNFVHRYPYVSISLGFAINKEPVVGVVFNPFTQQLYTGV 104
                 5789*************************************..99999.************************************************** PP

                 TTTEEEETC......EEEEECTTS...EGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCH........EEEBESSHHHHHHHHHHTSTSEEEEEC.E CS
  Inositol_P 136 kgkGaflng......eklplsrap...piseallvtlfavssrkdtseasllekvesavsae........gvrsvgssalklaavaeGkadaylefgre 217
                 kg G++l++      + lpl++     ++ +++lv+ +++s+r+ ++  +  +    + + +        ++rs+gs+al+l+ava+G++d+y+e g +
  KKY18338.1 105 KGFGSTLKDlkfdteQNLPLKEPLeplTTLSESLVAMEWGSDRSGVNYDTKVKTFANLARSKedggamvhSLRSLGSAALNLCAVASGSIDIYWEGG-C 202
                 *********66666666666666698966666677889999999999977777777777766999****999*************************.* PP

                 BHHHHHHHHHHHHHTTEEEEESSSC.......SSSTTSSEEEEESCHHHHHHHHHHHCCH CS
  Inositol_P 218 kkWDhAAGeaileeaGGvvtdakge.......grlllargiiaanqkelaellaaavees 270
                 + WD++AG++il+eaGG+++d + +       gr +la +++ +   + ++ ++++++++
  KKY18338.1 203 WAWDVCAGWVILKEAGGIIVDGNPGqwdcavdGRKYLAVRGAPGG--KGQKEIVEELWSH 260
                 ************************988777776666666665555..7777788877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1974.76
//
Query:       KKY18339.1  [L=526]
Description: putative cytochrome p450 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-46  158.3   0.0      4e-46  157.7   0.0    1.2  1  p450      Cytochrome P450
  ------ inclusion threshold ------
       0.11   12.7   0.2        7.2    7.0   0.0    3.0  3  PaaX_C    PaaX-like protein C-terminal domain


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.7   0.0   4.5e-50     4e-46      88     438 ..     142     493 ..      95     508 .. 0.80

  Alignments for each domain:
  == domain 1  score: 157.7 bits;  conditional E-value: 4.5e-50
                 TTCGHHHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHH..H CS
        p450  88 lfangekwkklRrfltptltsfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelss..l 183
                 ++ +++ ++  R+ l+p + +  +  + e+l+ + +e+l++++   +++++ +         ++d+i+  ++g++++ l ++++   +++ e+++    
  KKY18339.1 142 ATVSHSLHRLRRSALNPYFSKR-AVaNTEPLIWDKVERLCQRFAAAVKTKEIIRFDAAYMALTMDIITHYAYGESYNYLAEDDF--KLEWKETVIGgsA 237
                 4445578899999*******99.777************************9777777788899**************7777776..3333333322112 PP

                 HHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC....SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHH CS
        p450 184 lskssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsa....kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTt 278
                    +  q+     +lk  p + l+ ++    +l    +++++ + +t+ ++    kk + +  +a+++++      ++ s + l+ +  +l +aG++Tt
  KKY18339.1 238 NGVFLRQFPWALGILKATPLSVLKVMNPEAAQLV-SWQHMVRRQVDTILRNnregKKATGTVFQAVIDSD--LPP-EEKSADRLQDEGQTLVGAGSETT 332
                 3333444444444666777777777775433333.34444444444444442444555556666666664..444.5899******************* PP

                 HHHHHHHHHHHHHSHHHHHHHHHHHHHHC.CTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTT CS
        p450 279 sstlswaLyeLaknPevqeklreEidevl.gdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpev 376
                 + tls++ ++L ++++  +klr E+  v    +       l+ lpyl+avi E LRl   v ++lpR++ +++  r+  ip +t v+ + y +h+dp++
  KKY18339.1 333 AKTLSIITFYLNQDKTKLQKLRAELADVPlTPDGGSLLTRLEPLPYLTAVITEGLRLMYGVTTRLPRVAHEPLIYREWQIPPNTPVSQSNYFVHMDPNI 431
                 ****************************888888999************************************************************** PP

                 SSSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEES CS
        p450 377 fpnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelq 438
                 +pnPeeF peR+ ++k++    + +++ F+ G R+C+G +lA+ el l l+ ++++Fe+e  
  KKY18339.1 432 YPNPEEFLPERWIEAKEKGIHLDRYMVSFSKGSRQCVGINLAYAELYLTLSAIVRRFEFENF 493
                 ****************97777889999********************************953 PP

>> PaaX_C  PaaX-like protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.043   3.9e+02       8      25 ..      58      75 ..      52      80 .. 0.90
   2 ?   -0.5   0.0      0.17   1.6e+03      38      59 ..     135     156 ..     111     188 .. 0.76
   3 ?    7.0   0.0    0.0008       7.2      57      80 ..     424     450 ..     417     466 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.043
      PaaX_C  8 lWdldelaakYeeflaey 25
                +W+++el++kY ++l ++
  KKY18339.1 58 IWKIQELHDKYGTYLTQF 75
                6************99987 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.17
      PaaX_C  38 lapeeaFlvrtlllheyrkllf 59 
                  ape++F++  + lh+ r+  +
  KKY18339.1 135 GAPESSFATVSHSLHRLRRSAL 156
                 5789999999999999998665 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0008
      PaaX_C  57 llfrDPgL...PeellpedWpGaaare 80 
                 +++ DP++   Pee+lpe+W  a+ + 
  KKY18339.1 424 FVHMDPNIypnPEEFLPERWIEAKEKG 450
                 8999***9999*********9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 3152.19
//
Query:       KKY18340.1  [L=235]
Description: putative phosphoethanolamine n [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-10   39.0   0.0    5.9e-08   32.7   0.0    2.2  2  Methyltransf_23  Methyltransferase domain
    2.2e-05   25.1   0.1    8.5e-05   23.2   0.0    2.1  2  Methyltransf_25  Methyltransferase domain
    0.00035   19.9   0.0      0.013   14.8   0.0    2.3  2  Methyltransf_2   O-methyltransferase domain
    0.00077   19.3   0.0      0.016   15.0   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
     0.0026   17.5   0.0     0.0039   16.9   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase
     0.0082   15.7   0.0      0.014   14.9   0.0    1.3  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.026   14.0   0.1      0.089   12.2   0.0    1.8  2  Methyltransf_4   Putative methyltransferase
      0.028   15.0   0.0       0.11   13.2   0.0    2.0  2  Methyltransf_11  Methyltransferase domain
      0.032   15.0   0.1       0.13   13.0   0.0    2.0  3  Methyltransf_12  Methyltransferase domain
      0.043   13.2   0.0      0.074   12.4   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
       0.12   11.7   0.0       0.36   10.1   0.0    1.7  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   3.6e-11   5.9e-08      15      80 ..      11      77 ..       2      80 .. 0.78
   2 ?    4.5   0.0     0.017        27     107     131 ..      79     117 ..      77     147 .. 0.71

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 3.6e-11
  Methyltransf_23 15 rllpklraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepq 80
                      + +kl +++++Ld+G+GtGi++ ++ ++    +v+g Dlsp++ ++++ + ++ ++d +  qe+++p+
       KKY18340.1 11 DIITKLVTPQKILDVGTGTGIWAIEMGDEYPsaEVIGTDLSPIQPGWVPpNVRFEIDDAT--QEWDYPE 77
                     444556689*****************6664336**************9887777777777..6666665 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.017
  Methyltransf_23 107 tllkpgGylllseplasl...............kedrlll 131
                      + lkpgG+++lse    +               k+ + + 
       KKY18340.1  79 SALKPGGHIELSECRT-HmecddgtypveswtyKWIEEFN 117
                      579**********733.33555566655555544555554 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   5.2e-08   8.5e-05       1      33 [.      22      54 ..      22      80 .. 0.84
   2 ?   -2.8   0.0       6.6   1.1e+04      33      46 ..     201     214 ..     178     226 .. 0.62

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 5.2e-08
                     EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHH CS
  Methyltransf_25  1 vLdlGcGtGrltlalakrlgkakvtgvDiseem 33
                     +Ld+G+GtG +++++ +++++a+v+g+D+s+ +
       KKY18340.1 22 ILDVGTGTGIWAIEMGDEYPSAEVIGTDLSPIQ 54
                     8******************99*********965 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.6
                      HHHHHHHHHHHTTT CS
  Methyltransf_25  33 mleaareraeeegl 46 
                      +l+++re+++++++
       KKY18340.1 201 LLAHVREEIRSNKM 214
                      34445555555444 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   8.2e-06     0.013      60      95 ..      16      51 ..       2      55 .. 0.85
   2 ?    2.6   0.0     0.042        69     137     159 ..     190     212 ..     159     229 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.2e-06
                    GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2 60 leglkslvDvGGGtGalakaivsayPtikvivfDlp 95
                    l + ++++DvG GtG  a ++   yP+ +vi  Dl+
      KKY18340.1 16 LVTPQKILDVGTGTGIWAIEMGDEYPSAEVIGTDLS 51
                    666789*************************99996 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.042
                     GGGS-HHHHHHHHHHHHHH--TT CS
  Methyltransf_2 137 lhDwsdekcvklLkrvkkalpag 159
                       Dw+ e+++ lL++v++ ++++
      KKY18340.1 190 FADWTPEEVQVLLAHVREEIRSN 212
                     46****************99976 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   9.9e-06     0.016       6      38 ..      21      52 ..      18      54 .. 0.91
   2 ?    1.6   0.0      0.13   2.1e+02      99     119 ..      79      99 ..      77     132 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.9e-06
  Methyltransf_31  6 rvlDlGCGtGeltfelaeelgpkaevvGiDise 38
                     ++lD+G+GtG  ++e+    +p aev+G D s+
       KKY18340.1 21 KILDVGTGTGIWAIEMG-DEYPSAEVIGTDLSP 52
                     79***************.5599********987 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.13
  Methyltransf_31  99 rvlkpggilliedprllaelp 119
                      ++lkpgg++ ++++r++ e +
       KKY18340.1  79 SALKPGGHIELSECRTHMECD 99 
                      789************666555 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.4e-06    0.0039      34      82 ..       6      54 ..       2      72 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.4e-06
  Methyltransf_16 34 kklakelganelsklsvlELGsGtGlvGlavaellpeakviltDleell 82
                     +++ ++  ++ ++++++l++G GtG+  + +   +p+a+vi tDl+ ++
       KKY18340.1  6 MHIVQDIITKLVTPQKILDVGTGTGIWAIEMGDEYPSAEVIGTDLSPIQ 54
                     555566666778999******************************9866 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   8.9e-06     0.014      31      64 ..      18      51 ..       4      53 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 8.9e-06
                TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS 31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64
                + +k+lD+G+G+G+ ++++ +e+p+aev  +d +
  KKY18340.1 18 TPQKILDVGTGTGIWAIEMGDEYPSAEVIGTDLS 51
                4578***********************9988865 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.5e-05     0.089       5      33 ..      22      50 ..      19      54 .. 0.91
   2 ?   -1.6   0.0      0.97   1.6e+03      68      91 ..     137     164 ..     108     215 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.5e-05
                    EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4  5 vleiGcGkGeflvalAkknPdknflGiEi 33
                    +l++G+G G + +++  + P+ +++G ++
      KKY18340.1 22 ILDVGTGTGIWAIEMGDEYPSAEVIGTDL 50
                    79************************876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.97
                     S-TTSEEEEEEE.S---...--SGGGGG CS
  Methyltransf_4  68 ledgslekifil.FPDP...wfKkrhhK 91 
                     l+ g++e++ ++  P P   w+K ++ K
      KKY18340.1 137 LRGGRFENVEVFeQPCPigvWPKDKKLK 164
                     5555555554432344455577776655 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.6e-05      0.11       1      30 [.      23      54 ..      23      80 .. 0.84
   2 ?   -2.0   0.0       3.6   5.8e+03      87      94 ..      80      87 ..      78      89 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.6e-05
                     EEET-TTSHHHHHHHHTT..SEEEEEES-HHH CS
  Methyltransf_11  1 LdvGcGtGrlaealakrg..arvvgvDlskem 30
                     LdvG+GtG+ a ++ + +  a+v+g+Dls+ +
       KKY18340.1 23 LDVGTGTGIWAIEMGDEYpsAEVIGTDLSPIQ 54
                     8**************9999**********976 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.6
                     HEEEEEEE CS
  Methyltransf_11 87 vLkpgGll 94
                      LkpgG++
       KKY18340.1 80 ALKPGGHI 87
                     59****97 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.9e-05      0.13       1      30 [.      23      52 ..      23      73 .. 0.96
   2 ?   -2.4   0.0       5.1   8.2e+03      92      99 .]      80      87 ..      77      87 .. 0.85
   3 ?   -2.8   0.0       6.8   1.1e+04      65      91 ..     180     207 ..     165     212 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.9e-05
  Methyltransf_12  1 LeiGcGtGsllralleklpdieytgvDisp 30
                     L++G+GtG  + ++ ++ p +e++g+D+sp
       KKY18340.1 23 LDVGTGTGIWAIEMGDEYPSAEVIGTDLSP 52
                     8****************************8 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.1
  Methyltransf_12 92 lLkpgGrl 99
                     +LkpgG++
       KKY18340.1 80 ALKPGGHI 87
                     79****86 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 6.8
  Methyltransf_12  65 ssfDlvvasnvlhhl.kdirevldnirk 91 
                      +sf l +   +  ++ ++++ +l+++r+
       KKY18340.1 180 DSFSLALFTRFADWTpEEVQVLLAHVRE 207
                      4666666666666776777777777765 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.5e-05     0.074     161     194 ..      18      52 ..       3      56 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.5e-05
        PrmA 161 egeevlDvGtGSGiLaiaa.akLgakkvvavDiDe 194
                 + +++lDvGtG+Gi ai        ++v+++D+ +
  KKY18340.1  18 TPQKILDVGTGTGIWAIEMgDEYPSAEVIGTDLSP 52 
                 4579*************762567888999999887 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00022      0.36      46      81 ..      17      51 ..       4      54 .. 0.78
   2 ?   -2.2   0.0       1.2     2e+03     143     172 ..      81     111 ..      79     119 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00022
                     --TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran 46 krgakvlDvagGtgDlafklsdsvgekgkvvvlDin 81
                      +++k+lDv +Gtg +a+++ d+   + +v++ D++
       KKY18340.1 17 VTPQKILDVGTGTGIWAIEMGDEY-PSAEVIGTDLS 51
                     4789****************9986.56678888876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.2
                      EEEEEEEEEEEE.----SHHHHHHHHHHHH. CS
  Ubie_methyltran 143 lkpGGrlvvlef.skvelpllsqayelyske 172
                      lkpGG++   e  +++e+   + + e ++++
       KKY18340.1  81 LKPGGHIELSECrTHMECDDGTYPVESWTYK 111
                      8999999887752456666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 1462.61
//
Query:       KKY18341.1  [L=469]
Description: putative glycoside hydrolase family 92 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.8e-128  428.7   3.1   3.5e-128  428.4   3.1    1.0  1  Glyco_hydro_92  Glycosyl hydrolase family 92


Domain annotation for each model (and alignments):
>> Glyco_hydro_92  Glycosyl hydrolase family 92
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  428.4   3.1  1.9e-132  3.5e-128      49     461 ..       7     438 ..       3     439 .. 0.92

  Alignments for each domain:
  == domain 1  score: 428.4 bits;  conditional E-value: 1.9e-132
                     HHHHHTTSSEE--EE-TT......E-TTTSSEEE.S--EESEEHHHHTTTHHHHHHHH-HHHHHHHHHHHHHHHHHHSS--SEESSS.B---S-S CS
                     xxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_92  49 alYhallapneysdvdge......YsglddkvhkegksYttfslWDtyRaqhplltlldperasdmvrslldiykeggwlpdwrlsnsetavmgG 137
                     ++Y+++++p++y++ +        Y+  d++       Y    lWD++R+q+p+lt++dp+++s+mvrsl+d+y+++gwlpd+r+s ++++++gG
      KKY18341.1   7 GIYRTFVNPQNYTGENPLwqssepYF--DSF-------YC---LWDSFRSQLPFLTVVDPSSVSQMVRSLIDTYRHEGWLPDCRMSLCKGYTQGG 89 
                     58************666644444444..444.......65...9*******************************88****************** PP

                     -THHHHHHHHHHTT--.-S-HHHHHHHHHHHHHB-S-TT.TBTTT.HHHHHHHSS--T........TT.TTHHHHHHHHHHHHHHHHHHHHHTT- CS
                     xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx......xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_92 138 snadvvladayvkgir.dfdvekayealvkdaeeepeaadkerrg.lesylklgYvpa......kede.sesvsrtlEyaydDfaiaqlAkalgk 223
                     snadvvladay+k+++ ++++++ay+a++kdae ep+++++e+rg l+s+++l+++p       + +  ++s+srtlEy+ydD+++++lA++ g 
      KKY18341.1  90 SNADVVLADAYLKNLTgGINYTDAYAAVLKDAEAEPYDWSNEGRGgLDSWHELNFIPVqdfdykGFGTmTRSISRTLEYSYDDYCVSELAQKYG- 183
                     *************986588888**************9999999999****************9766645*************************. PP

                     HHH.HHHHTTGGGGGGGEETT.............TTCE--B-TTS-B-SS--TT--...............STTSSSS-HHHHTT--TT-HHHHH CS
                     xxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_92 224 kedaekylkrsknwrnlfdpe.............tgfmrprnadGtwaepfdpsedp..............eegftEgnawqysffvphDvagLi 291
                     k+d++ky +rs nw+nlf+++             tgf++p+  + tw    dp e +              + + +E++ w+ysffvphD a Li
      KKY18341.1 184 KADVAKYQARSGNWKNLFNADqtsylyngtytgfTGFFQPKFLNKTWG-YQDPLECSnidntgsvcslqntGAETFESSIWEYSFFVPHDQAALI 277
                     57899******************************************8.4456665588999******98633456******************* PP

                     HHHTSHHHHHHHHHHHS----TTGHHHHHHHTSS-TT-GGGTTGGGGGGGTT-HHHHHHHHHHHHHHSB-SSTT-BSSTTTSSTTHHHHHHHHHT CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_92 292 elmGGkeafvkrLdslfeeeekksedsaglsgqydhgNEpsfhtpylYnyagapwktqervreildelynntpdGlpGndDaGqmsawyvfsalG 386
                     +++GG++afv+rLd+l++            ++++++gNEpsf  +y+Y+yag+p++++ r++++++ +++ t+dGlpGndD+G+m+++++fs++G
      KKY18341.1 278 STFGGPTAFVNRLDYLHD------------QQITYIGNEPSFLSVYQYHYAGRPALSALRSHYYIPAYFQPTNDGLPGNDDSGAMGSFLAFSMIG 360
                     ******************............889************************************************************** PP

                     EE-SSTTS-EEEE---SSSEEEEE-.GGG-EEEEE-TT-..BTTB-EEEEEEETTEE---.EEEHHHHHT-EEEEEEEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_92 387 lYpvapgspeyllgsPlfekvtirl.engktltieaknn..saenvyvqsvtlnGkplkk.wlthediakGgtLefelg 461
                     l+p  pg+++yl+ +P+f++v+i+   +++t+ti+  n   + +n+y+q++tl+Gkp++k w++h+ + +Gg+L+++lg
      KKY18341.1 361 LFPN-PGQNVYLIIPPFFPSVSITSpLTNRTATITNVNFdpTYQNIYIQNATLDGKPYTKnWIDHSFFFDGGDLVLTLG 438
                     ****.********************888999***664444433788************666****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 3071.35
//
Query:       KKY18342.1  [L=2001]
Description: putative pentafunctional polypeptide [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.9e-127  425.5   0.0   8.4e-127  423.3   0.0    2.0  2  EPSP_synthase   EPSP synthase (3-phosphoshikimate 1-carboxyvi
    5.5e-98  327.3   0.0    8.8e-98  326.6   0.0    1.3  1  DHQ_synthase    3-dehydroquinate synthase
      5e-55  187.3   0.0    9.1e-55  186.4   0.0    1.5  1  DHquinase_I     Type I 3-dehydroquinase
    3.4e-34  118.2   0.0    6.2e-34  117.4   0.0    1.4  1  SKI             Shikimate kinase
    1.5e-25   89.2   0.0    3.7e-25   88.0   0.0    1.7  1  Shikimate_dh_N  Shikimate dehydrogenase substrate binding dom
    2.8e-13   49.9  21.8    8.5e-12   45.0  10.5    1.8  2  Glyco_hydro_43  Glycosyl hydrolases family 43
    8.1e-07   29.0   0.0    1.7e-06   27.9   0.0    1.5  1  Fe-ADH_2        Iron-containing alcohol dehydrogenase
    3.5e-06   26.7   0.1    1.1e-05   25.1   0.1    1.9  1  SDH_C           Shikimate 5'-dehydrogenase C-terminal domain
     0.0078   16.4   0.0       0.08   13.1   0.0    2.3  2  AAA_33          AAA domain
  ------ inclusion threshold ------
      0.063   13.3   0.0       0.18   11.9   0.0    1.7  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
      0.066   13.8   0.0       0.21   12.1   0.0    1.9  1  AAA_18          AAA domain


Domain annotation for each model (and alignments):
>> EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  423.3   0.0  5.1e-130  8.4e-127      11     417 .]     414     841 ..     406     841 .. 0.94
   2 ?   -1.4   0.0      0.43   7.1e+02     172     203 ..    1507    1538 ..    1505    1542 .. 0.89

  Alignments for each domain:
  == domain 1  score: 423.3 bits;  conditional E-value: 5.1e-130
                    EE--B-HHHHHHHHHHHGGGBSSEEEES---SHHHHHHHHHHHHTT.EEEEEECTSEEEEEGTT..--EE-HHHHTT-GGGGGGHHHHHHHHSEES CS
  EPSP_synthase  11 vkvpGsksisnralllAaLaegestitnlLdseDvrsmlealreLgaeiikldeekevviveglggsfeapeelvldlgnsgtalrlLtallalas 106
                      +pGsksisnral+lAaL++g+++++nlL+s+Dv+ ml+al +Lga++ +++e++ev++v+g+gg++ a     l+lgn+gta+r+Lt +++la+
     KKY18342.1 414 CVPPGSKSISNRALVLAALGKGTCKVKNLLTSDDVKVMLNALDKLGAATCSWEEDGEVLVVNGKGGRLHAH-PGELYLGNAGTASRFLTTVTTLAN 508
                    568*******************************************************************9.699******************988 PP

                    ....SEEEEE-SBTTCGS--HHHHHHHHHTT-EEEEETTEEEEEESEET...SS-BEEEEETSSTTHHHHHHHHHHHTTSBS..EEEEES..-TTH CS
  EPSP_synthase 107 ....gevvLtGdesirkRPidrlldaLrqlGaeieveegenkaplkvkg...lklkgveikaevsSqqvtsllllaallaeg..ttelee..lase 191
                          +vLtG++++++RPi +l++aL+ +Ga+ie+ e e+++plk+++   + +++++++a+vsSq+v+sll++a+ +a+    ++l++  ++s+
     KKY18342.1 509 kgrvDHSVLTGNARMKQRPIGDLVNALTINGAKIEYMEREGSLPLKIDAsggFAGGEINLAAKVSSQYVSSLLMCAP-YAKKpvVLRLVGgkPVSQ 603
                    789899******************************************9999*************************.5555499999999***** PP

                    HHHHHHHHHHHHTT-EEEETTSSEEEEEE--SS..B--EEEE--B-HHHHHHHHHHHHHTT-EEEEES--GGGGHHH..HHHHHHHHTTEEEEEES CS
  EPSP_synthase 192 psiddtlkmlkkfgikietsgteesitvkGkek..lpgteyvvegDassAayflvaAaitggevtvenvginslqGdiealdeilekmgaeitqee 285
                    p+i++t+ m+ +fgi++++s+tee+++  ++    +p+ eyvve+DassA+y+l+ Aaitg++ tv n+g  slqGd++++ ++l+ mg++++q++
     KKY18342.1 604 PYINMTIAMMASFGIHVRKSTTEEHTYHIPQGVyqNPE-EYVVESDASSATYPLAIAAITGTTCTVPNIGSASLQGDARFAVDVLRPMGCKVEQTA 698
                    ************************99999998885666.********************************************************* PP

                    TSEEEEEET...TS--BEEEEEBGSTTSBHGGGHHHHHH.....HHHTSBSEEEEEGSSSTTCCHHHHHHHTTT-EEEEETTEEE...EEEEEE.. CS
  EPSP_synthase 286 dasivvgps...glklkdvdietlpdeaptlavlaafae.....gttviegiaelrvketdrlaamateLrklGaeveeeedgli...iipaek.. 368
                    ++++v gp+      l +vd+e ++d+++t+ vlaa+ae      tt i gia++rvke++r++am +eL+k+G++++e++dg++   i       
     KKY18342.1 699 SSTTVTGPKdhaLRPLPSVDMEPMTDAFLTASVLAAVAEdtsgvATTKIYGIANQRVKECNRIKAMKDELAKFGVHCRELDDGIEvdgIA---Rek 791
                    9999999999866667789********************999999**************************************9944433...343 PP

                    ..EB-EEEE-TTSTTTTHHHHHHHHHSBSEEEEETTHHHHHHSSSHHHHH CS
  EPSP_synthase 369 .qlkgaevesydDhRiamalalaglvaegeveiddiectdksfpefeekL 417
                     +  ++ + +ydDhR+am++++++l+a++++ i + ect k++p++++++
     KKY18342.1 792 lRQPQGGIFCYDDHRVAMSFSVLALAASSPTLILEKECTGKTWPGWWDTM 841
                    4667799****************************************986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.43
                     HHHHHTTSBSEEEEES-TTHHHHHHHHHHHHH CS
  EPSP_synthase  172 lllaallaegtteleelasepsiddtlkmlkk 203 
                     l++a+  +eg+ +l e+a +ps+  +++m ++
     KKY18342.1 1507 LIFAGSSTEGKHILLEMAYKPSVTALMNMARE 1538
                     899*******9999999**********99765 PP

>> DHQ_synthase  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.6   0.0  5.4e-101   8.8e-98       4     261 ..      82     363 ..      79     364 .. 0.98

  Alignments for each domain:
  == domain 1  score: 326.6 bits;  conditional E-value: 5.4e-101
                   E-SSGGGCCHHHHHHHHHHHHHTT..--TT-EEEEEESHHHHHHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSSEEEEEETTEEEEEEEE---SEE CS
  DHQ_synthase   4 vpdgeksKsletlekildalleak..leRksllialGGGvvgDlaGfvAatylRGvrfvqvPttllaqvDssvGgKtainlplgKNliGafaqPkav 98 
                    ++ge+sKs +t + i d+ll+++  + R+++++alGGGv+gDl+GfvAaty+RGvrfvqvPttll++vDss+GgKtai++p+gKNliGa++qP+ +
    KKY18342.1  82 AAPGENSKSRQTKAAIEDWLLQQSppCARDTVMLALGGGVIGDLTGFVAATYMRGVRFVQVPTTLLGMVDSSIGGKTAIDTPHGKNLIGAIWQPERI 178
                   678********************999*********************************************************************** PP

                   EEEGGGGGGS-HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHC.............TTTHHHHHHHHHHHHHHHHHHHHHCCTTTTGGGGGGTT CS
  DHQ_synthase  99 lidlevLktLperelraGlaEviKyalikdeelfelleenaeallk.............eeeeealeeliarsievkaevveeDekekglralLnlG 182
                   ++dle+L+tLp+re+++G+aEviK+a+i++e+ f+ le+na+++l+             +  e+ l++++ +si++ka+vv++De+e glr+lLn+G
    KKY18342.1 179 YVDLEFLATLPPREFINGMAEVIKTAAISEETEFTFLEDNADSILEavtatpsgaqsrfKGIESILQRIVLASIKFKAHVVTADEREGGLRNLLNFG 275
                   *********************************************9***********9977899********************************* PP

                   HHHHHHHHHHHTTTTS-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTT---STTTT...........-HHHHHHHHTTCTTX CS
  DHQ_synthase 183 HtigHaiEallgyekllHGeaVaiGmvlaaelseklgllkkeeverllkllkklglpvslkel..........leveellealkkDkkv 261
                   H++gHaiEa+l + ++lHGe+V++Gmv++ael+++lg+l+  +v rl+k+l+++glp+sl+++          ++v++l++ +  Dkk+
    KKY18342.1 276 HSVGHAIEAILAP-QVLHGECVSMGMVKEAELARYLGVLRGVAVGRLVKCLAQYGLPISLEDErirrltagkhCSVDQLIKNMGVDKKN 363
                   *************.*************************************************9*******999**************8 PP

>> DHquinase_I  Type I 3-dehydroquinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.4   0.0   5.6e-58   9.1e-55       2     227 ..    1060    1285 ..    1059    1287 .. 0.90

  Alignments for each domain:
  == domain 1  score: 186.4 bits;  conditional E-value: 5.6e-58
                   EEE--SSHH...HHHHHHHHHTTS-SEEEEEGGG-.TT.T......HHHHHHHHHHHHHHTTS-EEEE---GGGT-S.SSS-HHHHHHHHHHHHHC CS
  DHquinase_I    2 vpitgktle...eilaelesgkekaDlvElRlDllketse......aedvseeleelrstsdlpliftlrtkaeggrfkrkseeeylellrtaiel 88  
                   v++t ++++   ++ +e+  g   +D++ElR+Dll+++s+       e+v+e+l  lrs  +lp+++t+rtk++gg+f++++++++lel++ +i++
   KKY18342.1 1060 VSLTMPDVRpfqKLFKEVVVG---SDAMELRVDLLENPSSpgsipsVEYVTEQLTILRSEIPLPVVYTIRTKSQGGKFPDDEYDAALELYKLGIRM 1152
                   778888888555566666666...9**********99977*******************88*********************************** PP

                   T-SEEEEEGG-.HHG.HHHHHHHHHHHTT-EEEEEEEESS----HH..HHHHHHHHHHHTT-SEEEEEE--SSHHHHHHHHHHHHHHHHHT-SS-E CS
  DHquinase_I   89 gadyvDvElteapee.skkrlieekreggtkvIvSyhdfegtpsae..elkallekmqalgaDivKiavmaksieDvlrllsltseakeekdeapl 181 
                   g+d+vD+E++  p e   k++ + +  g +k+I+S+hd +   s+   +++ +++k+ ++g D+vK++ +ak+++D+++l +++ +a++ ++++p+
   KKY18342.1 1153 GCDFVDLEIA-FP-EpLLKTVSSMR--GYSKIIASHHDPKAALSWTdgSWIPHYNKAIEYG-DVVKLVGVAKNMDDNFALRNFKTWAAS-QHDVPV 1242
                   *********4.55.43443566665..9******************999************.*********************976666.578*** PP

                   EEEE-TTTTGHHHCHHHHHTB-EEEEESSS-..SSTT-EEHHHHHH CS
  DHquinase_I  182 IamamGelGkiSRilgevfGspvtfasleeakasapGqltarelre 227 
                   Ia++mGe G+ SRi++ ++ +pv++++   + ++apGql+a+e+r+
   KKY18342.1 1243 IAINMGETGQPSRIMNGFM-TPVSHPA--LPFKAAPGQLSAAEIRK 1285
                   *******************.*******..7788***********97 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.4   0.0   3.8e-37   6.2e-34       1     157 [.     878    1041 ..     878    1042 .. 0.98

  Alignments for each domain:
  == domain 1  score: 117.4 bits;  conditional E-value: 3.8e-37
                  TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCS..SEEEEE-TTGGGSHHHHHHHH....HHSEEEEE CS
         SKI    1 mGaGKstvGkllAkklglefiDlDeliekrtgksiaeifeeegeegFrelEsevlkelleee..glViatGGGavlseenrellk....ekgiviyL 91  
                  +GaGK+t Gk++Ak lg+++iDlD+++e+ +g +i+++++e+g+ +Fre+E ++lk +++e+  g+V+a+GGG+v+s e+r+ll     + g v+++
  KKY18342.1  878 RGAGKTTSGKWVAKVLGRSLIDLDTELETIEGITIPDMIKEQGWPAFREKELALLKTVMAEKprGYVFACGGGIVESVEARKLLIdwheKVGNVLLV 974 
                  7***********************************************************************************9999999****** PP

                  E--HHHHHHHHHHTTSSGGGCSCHHHHHHHHHHH.HHHHHHCCSSCEEEECTSSHHHHHHHHHHHHH CS
         SKI   92 dvsleellerlkadkeRPllqekskeeelleela.ereplyeeaadvvvdeseeskeevaeeileal 157 
                  ++++ +++++lk dk+RP++ e++   +l+++ +  ++++++ ++ + ++e  + ++e++e++l+++
  KKY18342.1  975 QRDIGQVMDFLKIDKTRPAYVEDMMGVWLRRKPYfLQCSNMQYYSLYSSAEGLALAAEDFERFLKVM 1041
                  *******************************************************9****9999876 PP

>> Shikimate_dh_N  Shikimate dehydrogenase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.0   2.3e-28   3.7e-25       1      83 []    1300    1380 ..    1300    1380 .. 0.99

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 2.3e-28
                      EEESS-TT-SHHHHHHHHHHHCTSSEEEEEEE-SCCTHHHHHHHHHHTTESEEEE-TTSCCHHHGGSSEE-HHHHHHT--SEE CS
  Shikimate_dh_N    1 viGnpikhSlSPaihnaafkalglngsyeafeveedelekaveelralglaGlnvTiPfKeaviplldelseeAkaigAvNti 83  
                      ++G+pik S+SPa+hn++f+++gl+++y ++e++  + e++ +++r++++ G++vTiP+K +++p+lde+ eeA+ igAvNti
      KKY18342.1 1300 LFGEPIKASRSPALHNTLFAQQGLPHVYSTLETS--NAEDVKDTVRTEDFGGASVTIPLKLDIMPFLDEIAEEAQIIGAVNTI 1380
                      79********************************..**********************************************8 PP

>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0  10.5   5.2e-15   8.5e-12      27     222 ..    1608    1793 ..    1589    1795 .. 0.86
   2 !   20.8   3.5   1.2e-07   0.00019      68     143 ..    1752    1832 ..    1741    1869 .. 0.80

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 5.2e-15
                      EEBTEESEEEEEEESSSSSCEEEEECEESTTTCSTTTEECTEEEEEE..EETTEEEEEEEEEETTCCCSEEEEEEESSTTS--EECEESSCST CS
  Glyco_hydro_43   27 stfewfpglrifhSkdLvnWkqvgrvlerrsqlsmkgknasWAPeis..khdgkyylyytatkkgeakqgifvvtadspeGpwsdpiklktsg 117 
                      +t+  f+ +++++S+d + W+  g vl   s++++ +++    P++   + ++ y + + +++ +     ++v+t+++++G++  +++ k  g
      KKY18342.1 1608 TTSGHFQAVNCYRSSDFSSWEYRGAVLSPISGTNISNSSIVERPKVLynEGNDEYVMWFHNDDSDYSLAMVGVATSQTIDGTYNWTGSFKPFG 1700
                      566789********************************9999999983356678***9995555555555************9999999877* PP

                      SSECEEEEEEETTSEEEEEEEEEHCCCSEEEEEEEEEETTTTEEEEEEEEEEECGCCTCTTBBEEEEEEEEETTEEEEEEEESTSSTTEEEEE CS
  Glyco_hydro_43  118 ssgiDpslfedddGkkYlvwgqwdkreghseiylaeldddtlklkgektklikagtelkglkvtEGPhlykrdgyyYLlaaeggtgseyavvv 210 
                      + + D ++  dd+G++Yl++++ d+    +   +a l+dd+  ++  +    ++        + E+P ++k+dg yYLl++ ++   + +  +
      KKY18342.1 1701 TDSRDMTVWKDDNGTAYLIFASDDN----ADFKIASLTDDYYGVSTLQ--YEWT------DVYWEAPGVFKIDGSYYLLYSNQDSWNPTDNYY 1781
                      **********************665....69**********9998887..2233......3478********************999999999 PP

                      EEESSTTSGGEE CS
  Glyco_hydro_43  211 arsksllgPyew 222 
                       +++ ++gP+++
      KKY18342.1 1782 MSASVMTGPWSD 1793
                      9999*****987 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 1.2e-07
                      E.EEEEEEETTEEEEEEEEEETTCCCSEEEEEEESSTTS--EECEESSCS......TSSECEEEEEEETTSEEEEEEEEEHCC CS
  Glyco_hydro_43   68 W.APeiskhdgkyylyytatkkgeakqgifvvtadspeGpwsdpiklkts......gssgiDpslfedddGkkYlvwgqwdkr 143 
                      W AP + k+dg yyl+y+ ++++ +   +++++a   +Gpwsd + ++ +       +++ D  ++   + + Yl++g+ ++ 
      KKY18342.1 1752 WeAPGVFKIDGSYYLLYS-NQDSWNPTDNYYMSASVMTGPWSDSVLIAPEgtyaynTQNAYDI-VINGTEETLYLYYGDHWNA 1832
                      559***************.455555556*******************8778999977777775.5555559999999998876 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.1e-09   1.7e-06      10     249 ..      32     296 ..      28     297 .. 0.70

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.1e-09
    Fe-ADH_2  10 lgellkelelkkvllvadentkkaagekveeslkeagikve......vveeveeead..leeveklveal.....reketdlvvavGgGtiiDiakyvs 95 
                 +++ll++l+ ++ ++v+d+n+ +++  + + ++ +a++++       ++e + +e++   ++ +++ + l       ++ ++++a+GgG+i D++ +v+
  KKY18342.1  32 IEDLLTNLQSSTYVVVTDTNIGSIYLPSFKTNFGQAASRLPskprllIYEAAPGENSksRQTKAAIEDWLlqqspPCARDTVMLALGGGVIGDLTGFVA 130
                 5678888999999999999999999999998888888744223334334333333322223333333333443332255669***************98 PP

    Fe-ADH_2  96 ak..lnvpyvsvpTaa..SvDGfaspgaslvvdgkkrtvakaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwklanevseplaklsaamvq 190
                 a+  ++v++v vpT++   vD+      ++ + + k  +     P  +++Dl++la+ P r    G+++++   ta   ++ +  + e  a+++ + v 
  KKY18342.1 131 ATymRGVRFVQVPTTLlgMVDSSIGGKTAIDTPHGKNLIGAIWQPERIYVDLEFLATLPPREFINGMAEVI--KTAAISEETEFTFLEDNADSILEAVT 227
                 653389*********84457888888889999988998877789**************************9..47777777777777777777777776 PP

    Fe-ADH_2 191 eaaeklvedkketealeellealalsgigi...srpa..........SGsEHliSHaldmlalkqalHGeqV 249
                  + + +     + + +e +l+ ++l+ i +    ++a              H + Ha++++ + q+lHGe V
  KKY18342.1 228 ATPSGAQ---SRFKGIESILQRIVLASIKFkahVVTAderegglrnlLNFGHSVGHAIEAILAPQVLHGECV 296
                 6555555...45555566666665555555444223344433666666667**********99******987 PP

>> SDH_C  Shikimate 5'-dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   6.5e-09   1.1e-05       1      31 []    1546    1576 ..    1546    1576 .. 0.97

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 6.5e-09
                  HHHHHHHHHHHHHHHHHS----HHHHHHHHH CS
       SDH_C    1 GLgMLveQgaeqFelWTGrepPvevMreall 31  
                  GL+ Lv+Qg +qF++WT ++p  e  r a+l
  KKY18342.1 1546 GLEALVGQGMYQFQYWTDIMPLLEDCRTAVL 1576
                  9**************************9997 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.52   8.6e+02      12      83 ..      28     131 ..      24     146 .. 0.70
   2 !   13.1   0.0   4.9e-05      0.08       2      40 ..     872     913 ..     872     945 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.52
      AAA_33  12 Kstlaerllkklg..avllssdt............................lrrrlfgtdqqsktdytrvldrlyqilnelarka..lsagrnvildat 78 
                 K++++e ll +l+  ++++ +dt                            ++++  g+  +s +  + ++d+l q+    ar++  l+ g++vi d t
  KKY18342.1  28 KTHVIEDLLTNLQssTYVVVTDTnigsiylpsfktnfgqaasrlpskprllIYEAAPGENSKSRQTKAAIEDWLLQQSPPCARDTvmLALGGGVIGDLT 126
                 9*******9999999556666665899999998888888888888888886666666665555555566777888877777765411577777777777 PP

      AAA_33  79 nlsrr 83 
                  + ++
  KKY18342.1 127 GFVAA 131
                 55554 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.9e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfg...t 40 
                 ++++G+ G+GK+t  + ++k lg  l++ dt++++++g    
  KKY18342.1 872 IFIIGMRGAGKTTSGKWVAKVLGRSLIDLDTELETIEGitiP 913
                 689*****************************9999886442 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00011      0.18      14      89 ..    1420    1497 ..    1411    1504 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
                    EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHH.T.ET-EEEEGC.GHHHHHHT-SEEEE-SSSSS-S CS
  Shikimate_DH   14 kvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeel.kgeeiealkle.elkellaeadvvisataseepi 89  
                      l++G G +a+ ++ +L++ g+  +  ++R+ ++  ++++++  +++i++l+ e e+k l a+ d+ +  + + +pi
    KKY18342.1 1420 GGLVVGGGGTARAAIYALHRMGYSPIYLVGREPAKLTKMVTSFpTAYDIRILETEeEIKGLKAKPDIAVGTIPADKPI 1497
                    569****************************************55556666555414666666777777777777666 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013      0.21       1      49 [.     872     919 ..     872     982 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe.aldes 49 
                 I++ G+ G+GKtt +k ++k l  g+ l+d+ +e ++ ++ + + +++e+
  KKY18342.1 872 IFIIGMRGAGKTTSGKWVAKVL--GRSLIDLDTELETIEGITIPdMIKEQ 919
                 99******************99..77777777776666666655433322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2001 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.14u 0.32s 00:00:01.46 Elapsed: 00:00:00.53
# Mc/sec: 11448.89
//
Query:       KKY18343.1  [L=238]
Description: putative cytochrome b561 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-16   60.3   4.7    2.1e-16   60.3   4.7    1.6  1  Cytochrom_B561  Eukaryotic cytochrome b561
  ------ inclusion threshold ------
        0.4   11.0   9.1      0.043   14.1   2.1    2.4  2  DUF4149         Domain of unknown function (DUF4149)
        1.5    9.0  18.6       0.35   11.0   5.0    2.9  2  DUF4079         Protein of unknown function (DUF4079)
          3    7.3   9.8       0.47    9.9   5.8    1.5  2  DUF1129         Protein of unknown function (DUF1129)


Domain annotation for each model (and alignments):
>> Cytochrom_B561  Eukaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   4.7   4.8e-20   2.1e-16       2     130 ..      73     200 ..      72     207 .. 0.84

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 4.8e-20
                     HHHHHHHHHTHHHHHHHTHHH.HS-S...-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SS-SHHHHHHHHHHHHHHHHHHHHHHHHT CS
  Cytochrom_B561   2 HpvlmviGfvllmgeaiLvyr.vsstrklskktkkllHlilqllalilavvgllavfksknekeianlyslHswlGlvtvilfllqlvlGfvlfl 95 
                     Hp+l ++G +ll  ++iLv + +     ++k + + +H+++++++++  ++gl+++  +k   ++a ++s+H+++Glvt il+++q ++Gf+ ++
      KKY18343.1  73 HPLLNSAGILLL-VQGILVLQpT--HTPKQKTVGTNIHFAINFTGFLALIAGLIVIEVNKG--NHARFTSIHGRIGLVTYILIVIQTLIGFAQYY 162
                     9****9997665.69******44..4478899999**************999998666655..68****************************** PP

                     SS---HHHHHHHHHH...HHHHHHHHHHHHHHHHHHHH CS
  Cytochrom_B561  96 lpklskklralllpl...HvllGlvifvlaivtallGl 130
                     +p          +++   H+++G +i+++a++t++ + 
      KKY18343.1 163 IPTSVFGSVDNGKKIykyHRISGYLILLMALATICAAT 200
                     *98766555444444444***************99876 PP

>> DUF4149  Domain of unknown function (DUF4149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   3.1      0.21   9.5e+02      36      83 ..     106     155 ..      50     166 .. 0.61
   2 ?   14.1   2.1   9.6e-06     0.043       8      97 ..     143     235 ..     135     237 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.21
     DUF4149  36 klFplyfglglalsvlllltevavg..seklaseellqlllllvvllltl 83 
                   F + f+  lal + l++ ev +g   + ++ + +  l+  +++++ tl
  KKY18343.1 106 IHFAINFTGFLALIAGLIVIEVNKGnhARFTSIHGRIGLVTYILIVIQTL 155
                 34888899889999999999998776433333333444444444444443 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 9.6e-06
     DUF4149   8 Gsqlwvtfvv.apvlfrs..Lprhqfgelq.sklFplyfglglalsvlllltevavgseklaseellqlllllvvllltllnafylepritslk 97 
                 G ++++ +v  + + f++  +p+ +fg++  +k   +y ++++ l +l++l ++ +   +++ +++++ + l +v++ ++l   +++pri+++k
  KKY18343.1 143 GLVTYILIVIqTLIGFAQyyIPTSVFGSVDnGKKIYKYHRISGYLILLMALATICAA-TETGFNKMALHIQLWAVIVASVLVVAGVAPRIKKAK 235
                 555555555523334444666999999995345666777777777777777777666.478888899999999999999999********9987 PP

>> DUF4079  Protein of unknown function (DUF4079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   1.7    0.0077        35      88     129 ..      45      86 ..      38      92 .. 0.88
   2 ?   11.0   5.0   7.8e-05      0.35      45     128 ..     134     222 ..     126     228 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0077
     DUF4079  88 GlavvvLlalsaalvpeiqkgkstaRtlHialnvlalllfaw 129
                  +a +++++l a +  +i+ ++  + ++H +ln++ +ll++ 
  KKY18343.1  45 TVAQAGIWILTALVWSAIFMNDLILFSAHPLLNSAGILLLVQ 86 
                 567789******************************999874 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 7.8e-05
     DUF4079  45 kvrdeHvklgslllllvvlgaigglvlly........lrrgklfpssHlyaGlavvvLlalsaalvpeiqkgkstaRtlHialnvlalllfa 128
                 ++ + H  +g +  +l+v+ +++g++  y        + +gk ++  H ++G +++ L+al+++++ +    ++    lHi l  ++++  +
  KKY18343.1 134 RFTSIHGRIGLVTYILIVIQTLIGFAQYYiptsvfgsVDNGKKIYKYHRISGYLIL-LMALATICAATETGFNK--MALHIQLWAVIVASVL 222
                 5667799999999***************************************9876.55555555544444444..3788888777666554 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.45     2e+03     150     166 ..      49      65 ..      43      91 .. 0.64
   2 ?    9.9   5.8    0.0001      0.47      82     191 ..     106     224 ..      90     236 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.45
     DUF1129 150 llilllllvvwlvlftl 166
                 + i +l+ +vw ++f+ 
  KKY18343.1  49 AGIWILTALVWSAIFMN 65 
                 45566666777776653 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0001
     DUF1129  82 lDnsLlllalfallfgilalfskkkqtas........iGlitlllv..alvgGlamvlvyrlltrekkkkkrpplwkrllilllllvvwlvlftlvall 170
                 +  +  +++++al+ g++  ++ +k + +        iGl+t++l+    + G+a +++ + +  + ++ k++   +r+   l+ll+++  ++++++  
  KKY18343.1 106 IHFAINFTGFLALIAGLIV-IEVNKGNHArftsihgrIGLVTYILIviQTLIGFAQYYIPTSVFGSVDNGKKIYKYHRISGYLILLMALATICAATETG 203
                 5556667777777777766.444444444466789999***97665115688999999999888889******99999999999999999999999999 PP

     DUF1129 171 paviNpvLpplvliiigviaf 191
                  +++   ++ ++ i+  v+ +
  KKY18343.1 204 FNKMALHIQLWAVIVASVLVV 224
                 999999999888888776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.51
# Mc/sec: 1401.65
//
Query:       KKY18344.1  [L=738]
Description: putative m protein repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-55  188.7  61.3    1.9e-55  188.5  61.3    1.0  1  MAD         Mitotic checkpoint protein
    0.00056   19.5  22.4    0.00056   19.5  22.4    5.8  5  MscS_porin  Mechanosensitive ion channel porin domain
  ------ inclusion threshold ------
        2.9    8.3  49.3        0.3   11.4   4.2    7.0  8  BLOC1_2     Biogenesis of lysosome-related organelles complex


Domain annotation for each model (and alignments):
>> MAD  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.5  61.3   3.1e-59   1.9e-55       1     661 []      65     733 ..      65     733 .. 0.86

  Alignments for each domain:
  == domain 1  score: 188.5 bits;  conditional E-value: 3.1e-59
         MAD   1 raelieskaaleqlknelkqkelehkrarielekkasalkrqleeesdrnqelqkrikllekre.eekeealreqiElarlkkknlealnkkekekesk 98 
                 ra+l +++ +le+l++e     l+h+++  el+ ka+a  ++ +       +  k+ ++l+k+   +++++ +e++ l+r       +l  ++  ++s 
  KKY18344.1  65 RAQLNSLRYELENLQQERGLLTLQHEKEIRELQVKAEADYKKAQAAEGVALKASKKYEALQKEVrDAQDQNINEKASLER-------KLRDAQDRNQSL 156
                 6889999****************************998888888887778888888888888776677777777777777.......444455667788 PP

         MAD  99 laearevisalknelaelkrqiekqelelsekeseleelqerldllkkklseleqliqqlekkqkelaeaeqrikeLefeiqsqeddslivknsksela 197
                 ++e+++ ++ l ++ + +k qi++ e + ++ e  + ++++ l+ l++    l+  ++ l k++ e++++e+ i  L+ +    e  ++i ++  +++ 
  KKY18344.1 157 QEEVEDAQERLADQDRHYKYQINEIEAKCTTLEDTVASFKQDLQALNAD---LDATNAALTKQNAENENHEAEIVRLKARAGDSETLAVIQRELSDQVT 252
                 999*************************************999988875...56677899*************************************** PP

         MAD 198 ripelekelerlreenkklnelkenkelLkEevedlkkkLereEkareelvkLelekekleqeLksWeklaqdtgL..nlrsPealsrkieqLqqeeiv 294
                  i +le+  +++ +e +kl++ ++ +++++E++  l++ L+ + +++ ++ +L+++ke le e + W +l    g   + +sPea+ + ++q q e ++
  KKY18344.1 253 HIRRLESANREQAAELRKLRDAHKSVQVVEEQKRSLETELQVMNDVQRQMGELQIQKELLEDERRTWTSLLEREGQdiQFQSPEAVVKAFVQEQIEHAS 351
                 ***************************************************************************866789*****************9 PP

         MAD 295 lkeeksslesslkqlekaqreleqelaqllkkiedlkkkrke........hkelkrRLQrrvllltkErdllrailesyDke.....lteseaspklle 380
                  +++  +++ +++++ +++r le+   +l+++i  l+ +  +         ++ ++RL r+  l+ kE ++lra l+ +D e        ++ +  + +
  KKY18344.1 352 AVDRLGKAQAEVSEKDEVIRALEKSRGKLKEEIAKLEASSAAagsapplpDNKAVKRLERQRTLAVKEVEYLRAQLKTFDTEetmmfPEDNNFDAVKVQ 450
                 99999999999998888888888888888888877777766522222222466899**************************76644445789999*** PP

         MAD 381 RieeaedlvqkvqahneeveaqlevaeeevggykqqastlerelqalrqqesladassskeevdslkkkleeLelerqrLreqkeelElele..rreLq 477
                  i+++e lv+++++  + ++  l++ e++ +   q  +t     +++  +e+++d+ss   ++ ++ +k+ +L++   +L+e+++ l  el   +++L 
  KKY18344.1 451 QIQQLEFLVDEYRKEIHALHEDLSKYENTSSISAQAPATR---GTKRSLEEEEQDESS---QYGQILRKNKNLQASLTELQEKNQLLQTELTaaKKQLS 543
                 *************888888888888885544333333332...222223444445544...7*************************9999888***** PP

         MAD 478 gdydlkktkVlhlseNPaakakqqkkeqlekLqaEierlkellkkleedkekkvaslpessltlafkevleLrkelesaelkiqrlKevFkakiqEFRe 576
                      ++t++l l++NP+ ++ + ++  l +L+aE+ +l   ++  e     +++ +p+s+l+  + e+ eL + ++++e+++ r + +++ k  EFRe
  KKY18344.1 544 SLKTRSRTRILELRSNPTDDYFNLQRSTLAALKAENAALLSQVR-SEPL---STKVVPISTLESKEFEMKELERTIADKEKQLDRNRKIWMNKAMEFRE 638
                 ********************************************.3333...4579****999999999****************************** PP

         MAD 577 vvYmLlGYkidittnsqyRltSmY........aeekedallfklsesne.sklkLl...etpfSrtleelidlhlaeqksiPaflsalTLeLfsrqt 661
                 +v + lG+k+d+++n++ RltSm+        ++++ d  ++    ++e +++k     ++pf+ + ++l++++++e+  +P fl+a+ Le  +r t
  KKY18344.1 639 AVGSVLGWKVDFLPNGKARLTSMFhvrqlgsdSDSDPDDWSI--IFDGEqGTMKFAagpNSPFALECKDLVRFWVQERGEVPCFLAAVALECYERTT 733
                 ************************666655332333333333..33555579*998434578888**************************999987 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9  31.5       2.8   1.7e+04      28     170 ..      89     222 ..      75     242 .. 0.42
   2 ?   -3.4  20.2      0.92   5.5e+03      32     163 ..     178     297 ..     177     317 .. 0.51
   3 ?    2.3   3.3     0.017        99      17     106 ..     341     432 ..     328     436 .. 0.81
   4 !   19.5  22.4   9.4e-08   0.00056      37     166 ..     450     587 ..     446     593 .. 0.88
   5 ?   -3.5   0.2         1     6e+03      80      96 ..     608     624 ..     600     627 .. 0.52

  Alignments for each domain:
  == domain 1  score: -4.9 bits;  conditional E-value: 2.8
  MscS_porin  28 lLdkidkskkkaeelqkaiddaPkelrelqqelealqkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlns...........qlvelqtrp 115
                   ++i++ + kae+  k+ + a     +++++ eal  +ke  ++++ +    + Le++l +++++ q+lqe+  ++++           q++e++   
  KKY18344.1  89 HEKEIRELQVKAEADYKKAQAAEGVALKASKKYEAL--QKEVRDAQDQNINEKASLERKLRDAQDRNQSLQEEVEDAQErladqdrhykyQINEIEAKC 185
                 444555555555555555555555555555555555..3333333333333333333344433333333333333333300000001111334444444 PP

  MscS_porin 116 eraqqqltearqrlqeirnrLnstaaagealsqaqrtalqaelaaleaqieeleq 170
                 +++  + ++ +q lq+++++L++t                   aal+ q++e+e 
  KKY18344.1 186 TTLEDTVASFKQDLQALNADLDAT------------------NAALTKQNAENEN 222
                 444444444444444444444444..................3333333333332 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.92
  MscS_porin  32 idkskkkaeelqkaiddaPkelrelqqelealqkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlvelqtrperaqqqltearqrlq 130
                 i++ ++k   l+++++++ + l++l+++l+a     ++a  ++ a+      e ++   +++    +e+la ++ +l  + t + r+ +   ++r++ +
  KKY18344.1 178 INEIEAKCTTLEDTVASFKQDLQALNADLDAT----NAALTKQNAENENH--EAEIVRLKARA-GDSETLAVIQRELSDQVTHIRRLES---ANREQAA 266
                 56667777777888888888888888888888....33333333333333..23333333332.3344555555555555444444444...3444444 PP

  MscS_porin 131 eirnrLnstaaagealsqaqrtalqaelaalea 163
                 e+r+ L +  + + ++ ++q+ +l++el+  ++
  KKY18344.1 267 ELRK-LRDA-HKSVQVVEEQKRSLETELQVMND 297
                 4444.2222.22226777777777777766543 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.017
  MscS_porin  17 allqdLeqalnlLdkidkskkkaeelqkaiddaPkelrelqqeleal..qkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlns 106
                 a +q+  ++ +  d   k +++  e  ++i+   k   +l++e+++l  + +++ + ++ +++   + Le++ + +  +++ l++ql+++++
  KKY18344.1 341 AFVQEQIEHASAVDRLGKAQAEVSEKDEVIRALEKSRGKLKEEIAKLeaSSAAAGSAPPLPDNKAVKRLERQRTLAVKEVEYLRAQLKTFDT 432
                 4444444555667888889999999999999999*************877777778889999999*****9999999999999999998876 PP

  == domain 4  score: 19.5 bits;  conditional E-value: 9.4e-08
  MscS_porin  37 kkaeelqkaiddaPkelrelqqelealqkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlvelqtrperaqqqltearqrlqei... 132
                 +++++l+  +d++ ke+ +l ++l++++++++ + ++  ++ + + Le + +++ssq  +  ++ ++l+++l+elq   + +q++lt+a+++l+ +   
  KKY18344.1 450 QQIQQLEFLVDEYRKEIHALHEDLSKYENTSSISAQAPATRGTKRSLEEEEQDESSQYGQILRKNKNLQASLTELQEKNQLLQTELTAAKKQLSSLktr 548
                 7899***********************888888888888888999***************************************************776 PP

  MscS_porin 133 .rnrL...nstaaage..alsqaqrtalqaelaaleaqie 166
                  r+r+    s++++    +l+ +  +al+ae aal +q++
  KKY18344.1 549 sRTRIlelRSNPTD-DyfNLQRSTLAALKAENAALLSQVR 587
                 64444453333333.369*****************99986 PP

  == domain 5  score: -3.5 bits;  conditional E-value: 1
  MscS_porin  80 leeLeqrllqtssqlqe 96 
                 ++eLe+ +++ + ql +
  KKY18344.1 608 MKELERTIADKEKQLDR 624
                 44555555555555544 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.71   4.2e+03      38      58 ..      63      83 ..      58     102 .. 0.65
   2 ?   -0.4   0.4      0.25   1.5e+03      26      49 ..     111     134 ..      88     147 .. 0.69
   3 ?   11.0   4.6   6.9e-05      0.41      27      84 ..     135     195 ..     133     207 .. 0.82
   4 ?   -0.2   0.2      0.21   1.2e+03       9      44 ..     200     235 ..     194     241 .. 0.79
   5 ?   11.4   4.2   5.1e-05       0.3       9      78 ..     241     306 ..     237     326 .. 0.84
   6 ?    3.2   0.3     0.018   1.1e+02      48      86 ..     351     389 ..     329     393 .. 0.65
   7 ?    1.0   0.3     0.091   5.4e+02      48      79 ..     447     478 ..     409     481 .. 0.84
   8 ?    6.7   4.0    0.0015       9.1      10      65 ..     481     536 ..     477     548 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.71
     BLOC1_2 38 klkdvaaslekkleklnekye 58
                +l+ +++sl+ +le+l+++  
  KKY18344.1 63 DLRAQLNSLRYELENLQQERG 83
                566667777777777777554 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.25
     BLOC1_2  26 eklNeaasekykklkdvaaslekk 49 
                 e +  +as+ky++l++++ +++++
  KKY18344.1 111 EGVALKASKKYEALQKEVRDAQDQ 134
                 445567788888888888777654 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 6.9e-05
     BLOC1_2  27 klNeaas..ekykklkdvaaslekkleklnekye.elqpylqqidqiekqvteLeeavseL 84 
                 ++Ne+as  +k  + +d+ +sl++++e+ +e+ + + + y+ qi++ie++ t+Le++v+  
  KKY18344.1 135 NINEKASleRKLRDAQDRNQSLQEEVEDAQERLAdQDRHYKYQINEIEAKCTTLEDTVASF 195
                 6677665226889999*************9988768899*******************875 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.21
     BLOC1_2   9 kyleaeleatvedyklLeklNeaasekykklkdvaa 44 
                 + l+a+l+at++ +   ++ Ne+ ++++  lk +a 
  KKY18344.1 200 QALNADLDATNAALTKQNAENENHEAEIVRLKARAG 235
                 568899999999999999999998888888877765 PP

  == domain 5  score: 11.4 bits;  conditional E-value: 5.1e-05
     BLOC1_2   9 kyleaeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLe 78 
                 ++++ el+  v++++ Le  N++++++  kl+d+    +k+++ ++e++ +l+  lq ++++++q  eL+
  KKY18344.1 241 AVIQRELSDQVTHIRRLESANREQAAELRKLRDA----HKSVQVVEEQKRSLETELQVMNDVQRQMGELQ 306
                 68999***********************999876....56667778888889999999999999988886 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.018
     BLOC1_2  48 kkleklnekyeelqpylqqidqiekqvteLeeavseLDe 86 
                 + +++l + ++e++++ + i ++ek+  +L+e +++L++
  KKY18344.1 351 SAVDRLGKAQAEVSEKDEVIRALEKSRGKLKEEIAKLEA 389
                 445556666666666666666666666666666666665 PP

  == domain 7  score: 1.0 bits;  conditional E-value: 0.091
     BLOC1_2  48 kkleklnekyeelqpylqqidqiekqvteLee 79 
                 +k++++++++  +++y ++i ++++++++ e+
  KKY18344.1 447 VKVQQIQQLEFLVDEYRKEIHALHEDLSKYEN 478
                 46778888888888888888888888887766 PP

  == domain 8  score: 6.7 bits;  conditional E-value: 0.0015
     BLOC1_2  10 yleaeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylq 65 
                  ++a+  at+   + Le+  +  s++y ++ ++ ++l+++l +l+ek++ lq  l+
  KKY18344.1 481 SISAQAPATRGTKRSLEEEEQDESSQYGQILRKNKNLQASLTELQEKNQLLQTELT 536
                 67888899999999**********************************99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (738 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2522  (0.140666); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                       122  (0.00680462); expected 17.9 (0.001)
Passed Fwd filter:                        79  (0.00440627); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.06u 0.43s 00:00:02.49 Elapsed: 00:00:00.65
# Mc/sec: 3421.73
//
Query:       KKY18345.1  [L=574]
Description: putative seryl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-12   46.2   0.0    1.4e-07   31.7   0.0    3.1  2  tRNA-synt_2b   tRNA synthetase class II core domain (G, H, P,
    3.2e-05   24.1   5.9    6.9e-05   23.0   5.9    1.5  1  Seryl_tRNA_N   Seryl-tRNA synthetase N-terminal domain
  ------ inclusion threshold ------
      0.011   14.4   2.9      0.015   13.9   2.9    1.1  1  FapA           Flagellar Assembly Protein A
      0.034   14.9   2.0       0.07   13.9   2.0    1.5  1  Occludin_ELL   Occludin homology domain
      0.065   12.5   2.4        0.1   11.9   2.4    1.2  1  HemX           HemX, putative uroporphyrinogen-III C-methyltr
       0.14   12.5   2.9       0.32   11.3   2.9    1.7  1  DUF5082        Domain of unknown function (DUF5082)
       0.32   11.3   2.9       0.59   10.5   2.9    1.4  1  DUF641         Plant protein of unknown function (DUF641)
       0.33   11.1   7.1       0.64   10.2   7.1    1.4  1  Tropomyosin_1  Tropomyosin like
        0.6    8.9   5.8       0.91    8.3   5.8    1.2  1  Spc7           Spc7 kinetochore protein
       0.73    9.1   7.7       0.39   10.1   5.7    1.5  2  GAS            Growth-arrest specific micro-tubule binding
        1.8    9.0   7.6       0.39   11.2   2.5    2.3  2  DUF4140        N-terminal domain of unknown function (DUF4140
        3.9    6.8   9.2        1.1    8.5   5.8    1.7  2  DUF4407        Domain of unknown function (DUF4407)
          4    5.5  11.0        6.3    4.8   8.9    1.7  2  HOOK           HOOK protein


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   9.9e-11   1.4e-07      13      72 ..     319     382 ..     315     396 .. 0.86
   2 !   10.4   0.0   0.00035      0.48      79     171 ..     420     526 ..     412     547 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 9.9e-11
                   E-SSSHHHHHHHHHHHEEEBGGSSEEEEEEEEEEBTTTS....TBCTTTB-SEEEEEEEEEEES CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b  13 LkPtneetfvelirdevlrskrLPlklyqiqtkyRdEks....dsrGLlRvreFhqkdgyvfha 72 
                   L  t+e +++++  ++++   +LP+k++ ++++yR E+     +s+GL Rv+eF++ + +    
    KKY18345.1 319 LAGTAEIPLAAMLANQTISASNLPVKVAGVSRCYRAEAGargvESKGLYRVHEFNKVEMFAWTD 382
                   56688999999999**999999****************767999*************9987765 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00035
                   HHHHHHHHHHHHHHHTT.SCEEEEEEGTTSCBTTSEEEEEEEEETT............TSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEEEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b  79 slrdlikaisriferlglefraiielmsaksadykdkkefeavses............ltkgieigtiqklgtrlserlgatvldennreksvimic 163
                   ++ ++++  ++i+ +l ++ r+++    +  a++  k ++ea ++s             +  +e+ + + + +++s+rlg++v+d  ++     ++ 
    KKY18345.1 420 IFDEMLNIQKEILASLDFPCRVLEMPITDLGASAWRKIDIEAFFPSryrrgkedesdpDNGWGELTSTSICTDYQSRRLGTRVKDDSGSTAAATTTA 516
                   677888889999999999988777667778899999*********999*9999999975556689999999999*********99999888777666 PP

                   EEEE..HHHH CS
                   xxxx..xxxx RF
  tRNA-synt_2b 164 aaig..veRl 171
                   aa g   +R+
    KKY18345.1 517 AAAGggSTRF 526
                   6633245665 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   5.9     5e-08   6.9e-05       5     101 ..      61     168 ..      60     174 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 5e-08
                   HHHHH-HHHHHHHHCCCT..CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT.......S-TCCCCCCCHHHHH..HHHHHHHHH CS
  Seryl_tRNA_N   5 klirenpeavkeklkkRg..edkadvdelleldekrrelqveleelqaerNelskeIgkakkkk.......edaeeliaevkelke..elkaleael 90 
                     ir n  a++e++ +R+  + +++  ++ + +++ +el+ +++e +++ +++ k+Ig + ++        +++++l++e+++lke  +++a+e+ l
    KKY18345.1  61 SHIRRNWRAYEENCLRRRylDRAEEARTFDKEYDHVQELRRQIQEPRRQLKAVEKKIGALQARRnedtdtvAEIDSLKKEAQSLKEgaDISAKEQIL 157
                   579***********99999999999999999999*************************99999555666666666666666665433556666666 PP

                   HHHHHHHHHHH CS
  Seryl_tRNA_N  91 keleaelekll 101
                   +++e++l++++
    KKY18345.1 158 AKAEQRLHDIA 168
                   66666666665 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   2.9   1.1e-05     0.015     341     430 ..      74     163 ..      60     170 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
        FapA 341 eleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeeakikvnkeiypgvkik 430
                  l++++ +  ee ++ +k+++++++l+ + q + ++++ ++k + ++++ ++e ++  +e+++lk+e +s ke a i+++++i  + + +
  KKY18345.1  74 CLRRRYLDRAEEARTFDKEYDHVQELRRQIQEPRRQLKAVEKKIGALQARRNEDTDTVAEIDSLKKEAQSLKEGADISAKEQILAKAEQR 163
                 5788888889*************************************************************6666******999877655 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   2.0   5.1e-05      0.07      14      80 ..      86     155 ..      77     167 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.1e-05
  Occludin_ELL  14 kaeFnkeYkeYkelhaeleevskkfseLerelkelkegskeykkieeei...lqeykklkkdpeyqekkk 80 
                    + F+keY++ +el ++++e +++++ +e+++ +l+ +++e +++++ei    +e ++lk+ ++  +k++
    KKY18345.1  86 ARTFDKEYDHVQELRRQIQEPRRQLKAVEKKIGALQARRNEDTDTVAEIdslKKEAQSLKEGADISAKEQ 155
                   578*************************************988888884221445555555555555555 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.4   7.4e-05       0.1      60     146 ..      81     167 ..      37     175 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.4e-05
        HemX  60 qkqeleerlqqlaeklealekeleqlqkqleelqqqlskvsga.erkdWlLaeAdfLlklAgrkLvldqDvetAlalLksADevLaev 146
                 + +e ++++++  +++++l++++++  +ql+++++++ +++++ ++++  +ae d L k A + L    D+++  ++L +A+++L ++
  KKY18345.1  81 DRAEEARTFDKEYDHVQELRRQIQEPRRQLKAVEKKIGALQARrNEDTDTVAEIDSLKKEA-QSLKEGADISAKEQILAKAEQRLHDI 167
                 5566677888999999999999999999999999999999999556667899999987777.67999999999999999999999875 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.9   0.00023      0.32       6      54 ..      97     145 ..      63     162 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00023
     DUF5082   6 sklqaqiaelrseiaaleekIerLkeaktklsdekeslkqkkkklekpl 54 
                 ++l++qi e r +++a+e+kI  L++ + +++d+ +++++ kk+ +   
  KKY18345.1  97 QELRRQIQEPRRQLKAVEKKIGALQARRNEDTDTVAEIDSLKKEAQSLK 145
                 57899************************************99988765 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.9   0.00043      0.59      56     119 ..      75     145 ..      71     153 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00043
      DUF641  56 lkrlyrkkqkkkas.e...aeeseleaeiqeqrsllktyeitvkkleaelka...kdseieeLkekLeeae 119
                 l+r+y+++ ++ ++ +    + +el+++iqe r+ lk+ e+ + +l+a  ++     +ei++Lk++ ++++
  KKY18345.1  75 LRRRYLDRAEEARTfDkeyDHVQELRRQIQEPRRQLKAVEKKIGALQARRNEdtdTVAEIDSLKKEAQSLK 145
                 789999987766555245699*************************9976541114579999998876655 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   7.1   0.00046      0.64      25     106 ..      83     167 ..      68     171 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00046
  Tropomyosin_1  25 eleqenleke.qeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEeelees..dkkLkettekLret 106
                    + e ++ +ke +++++L +++q+   ++  +e+k+   ++  +e + + ++ ++l++  q L e ++ s  ++ L+++ ++L+++
     KKY18345.1  83 AEEARTFDKEyDHVQELRRQIQEPRRQLKAVEKKIGALQARRNEDTDTVAEIDSLKKEAQSLKEGADISakEQILAKAEQRLHDI 167
                    4566666776478***************************************************998762245689999998875 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.8   0.00066      0.91     191     248 ..      84     143 ..      63     167 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00066
        Spc7 191 eelesid..keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkselee 248
                 ee  + d   + ++elr++++e   ++++ +k++  lq++++e +++++e+++ k+e+++
  KKY18345.1  84 EEARTFDkeYDHVQELRRQIQEPRRQLKAVEKKIGALQARRNEDTDTVAEIDSLKKEAQS 143
                 333444411466888888888888888888888888888888888888888888888775 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.7   0.00028      0.39      62     118 ..      95     151 ..      83     168 .. 0.84
   2 ?   -4.2   0.0       6.4   8.8e+03      39      56 ..     290     307 ..     285     310 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00028
         GAS  62 pLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekv 118
                  +++++++++e r+qlk  ek+  +l++ +++ +++  e+ +lk e+++l++  +  
  KKY18345.1  95 HVQELRRQIQEPRRQLKAVEKKIGALQARRNEDTDTVAEIDSLKKEAQSLKEGADIS 151
                 57899**********************************************987653 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 6.4
         GAS  39 kkkeernekelseisqen 56 
                 + +++ +e++++e++q  
  KKY18345.1 290 QPRDQNDEQQIYELAQSA 307
                 567788888888887765 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.5   0.00028      0.39      65      95 ..      86     124 ..      74     126 .. 0.78
   2 ?   -0.3   0.4       1.1   1.5e+03      64      89 ..     132     149 ..     123     166 .. 0.47

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00028
     DUF4140  65 e........elkalraeleeledelaaledelaaaearl 95 
                 +         +++lr++++e +++l+a+e+++ a++ar+
  KKY18345.1  86 ArtfdkeydHVQELRRQIQEPRRQLKAVEKKIGALQARR 124
                 2334446746**************************997 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.1
     DUF4140  64 eeelkalraeleeledelaaledela 89 
                 + e+++l++e ++l++        ++
  KKY18345.1 132 A-EIDSLKKEAQSLKE-------GAD 149
                 2.35555555555553.......332 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   5.8   0.00081       1.1     116     201 ..      82     166 ..      69     179 .. 0.82
   2 ?   -2.0   0.1       1.3   1.8e+03      72      89 ..     527     544 ..     522     545 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00081
     DUF4407 116 qqeeakelkeqlaaa..ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelae 201
                 ++eea++++++++    l+ +++e ++q++a +++i a++ar+++ +++++ e+d  k++   +   +g+   +k++ l++a+++l +
  KKY18345.1  82 RAEEARTFDKEYDHVqeLRRQIQEPRRQLKAVEKKIGALQARRNEDTDTVA-EIDSLKKEA--QSLKEGADISAKEQILAKAEQRLHD 166
                 5677777777777667799**************************999999.777644333..4677888899999999999999976 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.3
     DUF4407  72 akkrrelalalpRlllAv 89 
                 a++ +  a+a+pR+l A+
  KKY18345.1 527 AHTVNGTAMAVPRVLAAL 544
                 56778899******9997 PP

>> HOOK  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   1.7     0.011        15     322     379 ..      61     116 ..      57     118 .. 0.86
   2 ?    4.8   8.9    0.0045       6.3     257     321 ..     104     167 ..      84     169 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.011
        HOOK 322 ndLrrqvklleernaeYlqktveleeelkkanalrsqlelykkqvqelhkklseeskk 379
                 + +rr+ +  ee+ +   ++ +++ ee++   +   +++ +++q+qe +++l++ +kk
  KKY18345.1  61 SHIRRNWRAYEENCL--RRRYLDRAEEARTFDKEYDHVQELRRQIQEPRRQLKAVEKK 116
                 568999999999987..78899999999999999999999999999999999887776 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0045
        HOOK 257 ddyrlkceelekevlelqqrneeltslaeEaqaLkDEvDvLresadkvkkleatvetykkkledl 321
                 ++ r +++ +ek++  lq r +e t   +E+ +Lk E   L+e ad ++k e+ +    ++l d+
  KKY18345.1 104 QEPRRQLKAVEKKIGALQARRNEDTDTVAEIDSLKKEAQSLKEGADISAK-EQILAKAEQRLHDI 167
                 566778899*************************************7766.77777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1008  (0.0562218); expected 358.6 (0.02)
Passed bias filter:                      637  (0.035529); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 3660.93
//
Query:       KKY18346.1  [L=395]
Description: hypothetical protein UCRPC4_g05028 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-47  160.3   7.1    7.4e-47  159.7   7.1    1.3  1  TRAM_LAG1_CLN8  TLC domain


Domain annotation for each model (and alignments):
>> TRAM_LAG1_CLN8  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.7   7.1   4.1e-51   7.4e-47       1     198 []      72     317 ..      72     317 .. 0.97

  Alignments for each domain:
  == domain 1  score: 159.7 bits;  conditional E-value: 4.1e-51
  TRAM_LAG1_CLN8   1 kfdervvslvqyllstvfglivlssspelwegy.perilgathfllkayyllalgYfiydllvlllyekkrkdfvemliHhiitlvllvlsyvrn 94 
                     ++d++vvs++q++++++++l+v+ ++pe++ ++  eri+g+t+++ + + +l++gYf++d ++++ y   ++  ++ l+H++++l++++ +  r+
      KKY18346.1  72 NWDVHVVSFIQSVFINILALYVINTDPERKGMNaLERIYGYTGACGL-VGALGAGYFLWDTIISTRYLNLFG--IGTLLHALAALCVFSAGS-RP 162
                     7******************************99999***********.************************..9*****************.** PP

  TRAM_LAG1_CLN8  95 lgrvglvvlllhelsdpflnlrkilsylkkkskssklvlfngllfllsFfvcRlvllpylillsildvaklslstap.................. 171
                     +++++ ++++l+els+pfln+++++++l +  ++skl+++ng+++l++F  cRl++++y++ ++++d++ + +   p                  
      KKY18346.1 163 YLQYYGSTFILYELSTPFLNIHWFCDKL-GL-TGSKLQWYNGMCLLATFAGCRLFWGTYQSFRVYQDIWEALSV--Psttsiasaiqahalesgt 253
                     ****************************.88.899**********************************95554..4469*************** PP

  TRAM_LAG1_CLN8 172 .....................................lwlpliflilllvLqllnlyWfylivk 198
                                                          + l +  ++++lvL++ln++W ++++k
      KKY18346.1 254 serifklsggqcvlgdpscaaaqseilrfishsqhlpVGLAFSTIASNLVLNSLNFFWYTKMIK 317
                     **************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2516.91
//
Query:       KKY18347.1  [L=521]
Description: hypothetical protein UCRPC4_g05008 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-40  136.2  23.3    1.1e-20   73.7   8.5    2.2  2  UPF0016   Uncharacterized protein family UPF0016
     0.0086   16.0   1.0       0.02   14.8   1.0    1.5  1  CCDC24    Coiled-coil domain-containing protein 24 family
  ------ inclusion threshold ------
      0.041   14.3   3.4        2.6    8.6   0.1    3.2  2  DUF3357   Domain of unknown function (DUF3357)
       0.22   12.0   2.0        1.4    9.4   0.6    2.4  2  Pox_F17   DNA-binding 11 kDa phosphoprotein
       0.55    8.4   3.7       0.96    7.7   3.7    1.3  1  DUF2070   Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> UPF0016  Uncharacterized protein family UPF0016
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   8.5   3.1e-24   1.1e-20       2      75 .]     255     328 ..     254     328 .. 0.96
   2 !   68.5   6.8   1.3e-22   4.6e-19       1      75 []     438     512 ..     438     512 .. 0.99

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 3.1e-24
     UPF0016   2 aaflliflaElGDkTqlaaalLaarykplpVflGavlAlalmtvlsvllGsslakrlperlielvaavlFllfG 75 
                  +f++i+++E+GDkT+l+aal+a+r+  + Vf++a++Al+ mtvls++lG+++ +++p+++++++a  lFl+fG
  KKY18347.1 255 LSFTMILFSEIGDKTFLVAALMAMRHPRMVVFTAAFCALITMTVLSAVLGHAVPTLIPKSVTNFLASGLFLVFG 328
                 69************************5555*******************************************9 PP

  == domain 2  score: 68.5 bits;  conditional E-value: 1.3e-22
     UPF0016   1 laaflliflaElGDkTqlaaalLaarykplpVflGavlAlalmtvlsvllGsslakrlperlielvaavlFllfG 75 
                 +++f+++fl E+GD++q+a++++aa +++++V  Ga++++a++t+ +v+ G+++a+r++ +++++ +a++Fl+fG
  KKY18347.1 438 VQTFVMTFLGEWGDRSQIATIAMAAGQDYWWVSGGALCGHAICTAAAVIGGRAIAGRVSLKVVTMGGAIAFLVFG 512
                 589***********************************************************************9 PP

>> CCDC24  Coiled-coil domain-containing protein 24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.0   5.5e-06      0.02      75     139 ..     356     418 ..     324     430 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.5e-06
      CCDC24  75 aaegrdeeqllaqrsrrvldYvl.daaaersareespssrPesasskstaasaasgsssasalssa 139
                 ++++ +++++ ++rs++v  Yvl + +a r+++ +s+s  P+ + s+s+a+s++s+ s++s     
  KKY18347.1 356 EEKEIQQRRMNRRRSSSVTPYVLeAGRAVRAKSRTSQSRLPSPPESPSPASSRGSSPSRES---PF 418
                 4455788888888**********53334444444444444555555554445555554444...33 PP

>> DUF3357  Domain of unknown function (DUF3357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00071       2.6      54      93 ..     116     151 ..     100     158 .. 0.65
   2 ?    4.4   0.8     0.014        50      18      46 ..     279     306 ..     267     370 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00071
     DUF3357  54 vapgevavsetaesvsaaveetaSRGveaGVSeKssgaal 93 
                 ++++   + ++++ v     +   RG e G+SeKs+ +  
  KKY18347.1 116 PKSNDAVM-DDPHRV---GPKEGTRGTEGGISEKSRDSKI 151
                 55444333.333332...235789***********98766 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.014
     DUF3357  18 rarrpllaavliasalvvlvvlvalagvr 46 
                 r  r + +++++++al+ + vl a+ g  
  KKY18347.1 279 RHPR-MVVFTAAFCALITMTVLSAVLGHA 306
                 5556.89999**************99873 PP

>> Pox_F17  DNA-binding 11 kDa phosphoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.16   5.9e+02      33      80 ..      35      83 ..      17      92 .. 0.66
   2 ?    9.4   0.6    0.0004       1.4      46      76 ..     387     421 ..     359     431 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.16
     Pox_F17 33 gskasCvlkvekprspacerrp..asPCerrsssssPkkqvPfmrtnlLe 80
                +  a  +  ve+p   + + +p  +   ++  ++++P+ + Pf++t++ +
  KKY18347.1 35 ARDAIPANAVEQPVLQSGKANPvgTKDAPVDGKDGKPH-AGPFVETEAER 83
                34455556788887777777763333478888999999.99***998755 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0004
     Pox_F17  46 rspacerr....pasPCerrsssssPkkqvPfmrt 76 
                 +s ++++r    p+sP + +s+ ssP +++Pf r+
  KKY18347.1 387 KSRTSQSRlpspPESPSPASSRGSSPSRESPFRRA 421
                 4555666687878999***************9775 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.7   0.00027      0.96      38     117 ..     250     332 ..     229     335 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00027
     DUF2070  38 lfgillfglpalvaflltlpvlrilggrltykrs.lflalltelivviisllaillsall..qalvllalvlslalvfalrll 117
                 l+++ll +  +l++ + ++ +l  +   + + r  +f a++++li + ++ + +  ++ +  +++v+++l+ +l+lvf++ +l
  KKY18347.1 250 LHSLLLSFTMILFSEIGDKTFLVAALMAMRHPRMvVFTAAFCALITMTVLSAVLGHAVPTliPKSVTNFLASGLFLVFGIKML 332
                 44555555556666666666666665557777777788888877777654444444443467999999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1174  (0.0654805); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.49
# Mc/sec: 3197.50
//
Query:       KKY18348.1  [L=344]
Description: putative acid phosphatase precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-36  123.9   0.0    8.7e-36  123.5   0.0    1.1  1  SurE      Survival protein SurE


Domain annotation for each model (and alignments):
>> SurE  Survival protein SurE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5   0.0   4.8e-40   8.7e-36       1     177 [.      18     222 ..      18     240 .. 0.85

  Alignments for each domain:
  == domain 1  score: 123.5 bits;  conditional E-value: 4.8e-40
                 EEEE-SS-TT-HHHHHHHHHHTTTTSEEEEEEESSS-TTCTTS--SSSEEEEEEEECS..............TTTCEEEESS-HHHHHHHHHHTTTTTS CS
        SurE   1 iLltNDDGieapgiralvealaaaghevvvvaPdserSgigkaltleeplrveseeee..............eeeeeyavsGtPadcvklaleellkek 85 
                 i++ NDDG+ +++ir++++ l+aagh+ ++vaP  ++Sg g   +++++  ++s +e               ++++ ++ +GtPa+c+ +al+ +++++
  KKY18348.1  18 IIVNNDDGFGSANIREFYRLLTAAGHNAWIVAPVDNESGQGGRSSFTTSRYLNSPSEYdiipagapsfgtdpNDSKIWYYNGTPAACTFFALDYVVPRY 116
                 799**************************************99876655544433222578888899999999***********************998 PP

                 .....SSEEEEEEEES---GGGG.GG-HHHHHHHHHHHTTSEEEEEEEESSS....SS-SSS---HHHHHHHHHHHHTTETTS-........SS-EEEE CS
        SurE  86 ....kpdlVvSGiNhGaNlgtdv.lySGTvgAaleaalegipaiAvSlaskk....eeekkeedtfeaaakvaaklvekliekll.....lekvellnv 170
                     +pdl+v+G+N+G Nlg    + SGT+gA+++a+ +++pai++S++++     ++ ++++d ++ +ak+a++lv+++ +++      l+++  l v
  KKY18348.1 117 wngtEPDLLVAGPNFGLNLGPFLyTLSGTMGATYAAVNRDLPAISFSAGNSGqrgyTTVNSTNDPATVTAKLAVALVNQIAKNTKpgkrlLPHGYGLGV 215
                 999999***************999*************************987888755666677777788888888887766666999999******** PP

                 EEESS.G CS
        SurE 171 NvPelee 177
                 N+P  ++
  KKY18348.1 216 NIPYITS 222
                 ***4332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 2135.46
//
Query:       KKY18349.1  [L=390]
Description: putative methyltransferase domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-09   37.2   0.0    3.7e-09   36.6   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    5.5e-09   36.6   0.0    1.5e-08   35.1   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
    7.5e-07   29.8   0.0    1.2e-05   25.9   0.0    2.5  2  Methyltransf_25  Methyltransferase domain
    9.5e-07   29.5   0.0    3.1e-06   27.8   0.0    1.9  2  Methyltransf_12  Methyltransferase domain
      0.007   16.2   0.0       0.02   14.7   0.0    1.7  2  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
       0.15   11.3   0.0       0.22   10.8   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.2e-12   3.7e-09       5     163 ..      69     265 ..      64     267 .. 0.68

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1.2e-12
  Methyltransf_23   5 reeelsdklerllpklraggrvLdiGcGtGillevl.re.....................ngfsvtgvDlspeaveiae.kakkaqkdqfdeqe 75 
                      r e ++++ +rll+ +r+  +vLd+G  +G++++   ++                     +  ++t+ ++sp +  +   +++ +++++  ++ 
       KKY18349.1  69 RDEVAQRLCDRLLDIKRTFPSVLDLGSHSGNVARAVlSPnvpapehadesqpppvqplhtRMEHLTMAEASPSMLYRDDlGDSANPHSSSLQIT 162
                      457788999*********************9966554552333333333333333222214457777777777666665866666666665555 PP

  Methyltransf_23  76 aae..........pqgkfdlIvlrevlehvpdppellrqiatllkpgGylllsep.laslkedrllldwlylvpag...rhi.sffsarslkel 154
                      +++          p ++fd + ++ +l+++ d+p  l+qi++ lkp+  ++  +  + sl+e+r+ l+ + l  +g    h+  + + r++++l
       KKY18349.1 163 RQPlyayetplpfPPNTFDAVLSSLTLHWINDLPTMLSQINQVLKPDSPFIGAMLgGDSLYELRSSLQLADLERRGgvtPHVsPLADVRDVGNL 256
                      5555555555555999*******************************99988887344557666666654444455466455577788888888 PP

  Methyltransf_23 155 leeaGlevv 163
                      l +a ++++
       KKY18349.1 257 LTRASFKLL 265
                      888877765 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   5.2e-12   1.5e-08      20      92 ..     132     210 ..     121     213 .. 0.65

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 5.2e-12
                      EEEEEES-HHHHHHHHHHCCHHT-....EEEETTEECCC..TSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEE CS
  Methyltransf_11  20 rvvgvDlskemlklakekaseegl....kvefvvadaek..lpfednsfDlvvssevlhhvedpekalkeiaRvLkpgG 92 
                      +++  + s+ ml +     s +++    +++ +   a +  lpf+ n+fD+v+ss +lh+++d+   l++i +vLkp+ 
       KKY18349.1 132 HLTMAEASPSMLYRDDLGDSANPHssslQITRQPLYAYEtpLPFPPNTFDAVLSSLTLHWINDLPTMLSQINQVLKPDS 210
                      556666666666222222222222332223333333333358***********************************86 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.25   7.5e+02       1      16 [.      90     105 ..      90     116 .. 0.89
   2 !   25.9   0.0   4.1e-09   1.2e-05      17      96 ..     128     209 ..     121     209 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.25
                      EEEET-TTSHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlala 16 
                      vLdlG  +G++++a++
       KKY18349.1  90 VLDLGSHSGNVARAVL 105
                      9**********99875 PP

  == domain 2  score: 25.9 bits;  conditional E-value: 4.1e-09
                      CTSTSSEEEEEESSHHHH......HHHHHHHHHTTTTEEEEESBC....CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEE CS
  Methyltransf_25  17 krlgkakvtgvDiseeml......eaareraeeeglnvefvqgda....edlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpg 96 
                      +r+  +++t+ + s++ml      + a+ + +    ++++ ++ +    + lpf+ ++fD+v+ss +lh+++  dl+++l++i +vLkp+
       KKY18349.1 128 TRM--EHLTMAEASPSMLyrddlgDSANPHSS----SLQITRQPLyayeTPLPFPPNTFDAVLSSLTLHWIN--DLPTMLSQINQVLKPD 209
                      554..678888888888855322222333332....33333333322325599***********98899988..9*************96 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.1e-09   3.1e-06       1      96 [.      91     209 ..      91     212 .. 0.86
   2 ?   -2.7   0.0       3.4     1e+04       4      18 ..     300     314 ..     300     329 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.1e-09
  Methyltransf_12   1 LeiGcGtGsllrallekl....................pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.....ssfDl 69 
                      L++G+ +G+++ra+l  +                    +  ++t  + sps++   +  l +  n + + ++++ + l   + +     ++fD+
       KKY18349.1  91 LDLGSHSGNVARAVLSPNvpapehadesqpppvqplhtRMEHLTMAEASPSML--YRDDLGDSANPHSSSLQITRQPLYAYETPlpfppNTFDA 182
                      899***********9999999999******99999998888899*********..6666666666666677776666655555577999***** PP

  Methyltransf_12  70 vvasnvlhhlkdirevldnirklLkpg 96 
                      v++s +lh+++d+  +l++i ++Lkp+
       KKY18349.1 183 VLSSLTLHWINDLPTMLSQINQVLKPD 209
                      **************************8 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.4
  Methyltransf_12   4 GcGtGsllrallekl 18 
                      G+G G l+r +l ++
       KKY18349.1 300 GAGLGGLSRDVLIAN 314
                      899999999988665 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.9   8.6e+03       7      19 ..      90     102 ..      89     108 .. 0.80
   2 !   14.7   0.0   6.6e-06      0.02      66     108 ..     173     213 ..     166     239 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.9
  Methyltransf_31   7 vlDlGCGtGeltf 19 
                      vlDlG+ +G+ + 
       KKY18349.1  90 VLDLGSHSGNVAR 102
                      99***99998766 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 6.6e-06
  Methyltransf_31  66 leklledekfDlilsnevlnaladpdkileeiervlkpggill 108
                      l+  + +++fD +ls  +l+ ++d++  l +i +vlkp++ ++
       KKY18349.1 173 LP--FPPNTFDAVLSSLTLHWINDLPTMLSQINQVLKPDSPFI 213
                      55..7889******************************99776 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.2e-05      0.22     104     146 ..     167     209 ..      84     216 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.2e-05
                      E--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEE CS
  Ubie_methyltran 104 qanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpG 146
                       a    Lpf  ++fD v  s  l  + D ++ L ++ +vlkp 
       KKY18349.1 167 YAYETPLPFPPNTFDAVLSSLTLHWINDLPTMLSQINQVLKPD 209
                      5566789**********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2388.32
//
Query:       KKY18350.1  [L=481]
Description: putative dynactin arp1 p62 subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     7e-114  381.2   0.0   8.7e-114  380.9   0.0    1.1  1  Dynactin_p62  Dynactin p62 family


Domain annotation for each model (and alignments):
>> Dynactin_p62  Dynactin p62 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  380.9   0.0  4.9e-118  8.7e-114      95     461 ..       1     367 [.       1     382 [. 0.85

  Alignments for each domain:
  == domain 1  score: 380.9 bits;  conditional E-value: 4.9e-118
  Dynactin_p62  95 sWssleigikFdkpngiraqlsklknggkkrltakersklkerrkeaessseeeaeeeeseeedetaledsdekldaearfanLkaFYksqlaeass 191
                   +Wssl+igikFdkp++ir+ql+k+ ng  ++    e      r+++ ++  +  a+++e   ++  +  +s+e+l++ arfa+Lk+F k+qla++  
    KKY18350.1   1 MWSSLDIGIKFDKPTNIRSQLDKIVNGRASKPDGAEL----ARKSSLSR-GA--AAQAE--GNE--P--SSTEELNHVARFAALKSFLKNQLATSM- 83 
                   7***************************999999888....23333322.22..11112..222..2..34789******************9974. PP

  Dynactin_p62 192 asaelsaledlgfsspsalsRimslYtgkslakkkkkskltvmRealtaseGlkiadaldesaaiek..lkkegwdatasteqraeqaeeav..... 281
                   +s++   ++  +++spsal+RimslYt+++++ +k ksk++ mRealt +eGl++  + + +++ e     ++++++t s +q  +q++ ++     
    KKY18350.1  84 GSDSS--TGYDTYASPSALTRIMSLYTTSGSSLRKPKSKPPLMREALTPTEGLQTGYSPNAASSTEPppSVASDFSSTPSPDQLLAQYSATAfgnpa 178
                   44443..57788******************************************86644444444431144579**************999999999 PP

  Dynactin_p62 282 .rfvdeLrPipvllrtkRskRCkaCrhilskPeakvqstRfrirlvalsyiPtitirplklsaetvasapavaeealleplkpvqflltlknplfds 377
                    + v++LrP+p+llrtkRskRCk+C+hil+kPe+k+qstRfrirl+al+yiP+it+rpl++ a  ++++p + e+ +l+p k+ qf+l+lkn+lf++
    KKY18350.1 179 aKSVSSLRPMPTLLRTKRSKRCKSCKHILVKPEFKPQSTRFRIRLIALAYIPLITLRPLQPPA--IPQHPLTMEAPILTPGKTSQFILNLKNHLFEP 273
                   9***********************************************************965..5999*999************************ PP

  Dynactin_p62 378 vrvtlatpsvtpgrvaskvtiLCPqfevgantDvwdeaLkkskkakekrkseagaa..........ekqaeagkvwergRnwvsvvlevvPasl 461
                   v+vtl+ p +tpg++ ++vt+LCPqfe+gan++vwd+aL + +++++   +  gaa          ++++eagkv+ergRnwv v +e++ a +
    KKY18350.1 274 VKVTLGVPGTTPGKYGHRVTVLCPQFEIGANSEVWDDALAAPTSTSSGIAAGIGAAgegslmggsgSGTMEAGKVFERGRNWVGVGVEIICAPI 367
                   ****************************************4444444333333333445677887899**********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 2959.70
//
Query:       KKY18351.1  [L=201]
Description: putative 40s ribosomal protein s7 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.7e-84  279.7   0.4    1.1e-83  279.5   0.4    1.0  1  Ribosomal_S7e  Ribosomal protein S7e


Domain annotation for each model (and alignments):
>> Ribosomal_S7e  Ribosomal protein S7e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.5   0.4   6.4e-88   1.1e-83       3     183 ..      10     194 ..       8     195 .. 0.98

  Alignments for each domain:
  == domain 1  score: 279.5 bits;  conditional E-value: 6.4e-88
                    CSSS-S---HHHHHHHHHHHHHHHHTSSCHHHHTT--ECEEEEEEETSSCEEEEEEEEHHHHHHTTTCHHHHHHHHHHHC.SSEEEEEEE-----S CS
  Ribosomal_S7e   3 vkpkgeepteleeqvaqalldleanssdlkaelrelqissakevevkkkkkaivifvpvpllkafqkiqqrlvreLeKkfsgkhvvfvaqRrilkk 98 
                    ++p++++p+eleeq+aqa++dle+n++dlka+lr+lq+ sa+e+ev+++kkaivifvpvpll+ f+k+qqrl+reLeKkfs++hv+f+aqRril++
     KKY18351.1  10 NSPSRAKPSELEEQIAQAFYDLESNTADLKAQLRPLQFASAREIEVGHGKKAIVIFVPVPLLQGFHKVQQRLTRELEKKFSDRHVIFLAQRRILPR 105
                    568899****************************************************************************************** PP

                    SCG.....TTSTSS--TTSSHHHHHHHHHHHHCTTS-EEEEEEEE-SSS-EEEEEEEESCTCCCHHHHHHHHHHHHHHHHS-BEEEEEE CS
  Ribosomal_S7e  99 ptr....rskkkqkrprsrtltaVhdaiLedlvyPseivGkrirvrldgskllkvfLdkkdqnnveekldtfsavykkLtgkdvvFefp 183
                    p+r    r+ ++qkrprsrtltaVh+aiL d+vyP+eivGkr+r++ dgskllkv+Ld+k++  v+++ldt+s+vy+kLtg+ v+Fefp
     KKY18351.1 106 PKRsnrsRTTQTQKRPRSRTLTAVHEAILSDVVYPVEIVGKRLRTKEDGSKLLKVILDEKERGGVDYRLDTYSDVYRKLTGRSVAFEFP 194
                    **998888899*****************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 1229.96
//
Query:       KKY18352.1  [L=439]
Description: putative monooxygenase fad-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-18   67.0   0.2    8.4e-09   35.1   0.0    2.6  2  FAD_binding_3  FAD binding domain
    0.00066   19.9   0.1     0.0021   18.3   0.1    1.9  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00085   19.0   0.2      0.031   13.9   0.2    2.1  2  DAO            FAD dependent oxidoreductase
     0.0019   17.3   0.0       0.33   10.0   0.0    2.6  3  Lycopene_cycl  Lycopene cyclase protein
      0.005   15.9   0.0      0.032   13.3   0.0    1.9  2  SE             Squalene epoxidase
  ------ inclusion threshold ------
      0.045   13.0   0.0      0.084   12.1   0.0    1.4  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      0.048   13.6   0.0       0.14   12.1   0.0    1.8  1  NAD_binding_9  FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   2.1e-10   5.4e-07       4     242 ..       5     248 ..       3     280 .. 0.73
   2 !   35.1   0.0   3.3e-12   8.4e-09     286     344 ..     312     369 ..     305     374 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 2.1e-10
                    EEEE--SHHHHHHHHHHHHTTHH...EEEEESSSSSCCSSS--E...EEHHH.HHHHHHTT-HHHHHHHSEECCCCEEEEEEE........CCCCC CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvr...vvlvekrsttvvlpradg...lnqrt.mellrqlGledrilaegapnelmgealyne........lsdtp 84 
                    ++I+G+GpaGl+la+lL +        ++ e  ++++    ++g   l+ ++ +  l+++Gl +++ ++++       + + +        +sdt 
     KKY18352.1   5 IAIIGGGPAGLTLAKLLDSSPHTrdcYTVFEADESASSRVHSGGsldLHVESgIAALQKAGLYAEFVKRARFGGAEDLIISDQngkewfrkISDTT 100
                    68***************988544677788899888888887766222444433678**************77766666666668899988888888 PP

                    EEEEEHHCHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEE CS
  FAD_binding_3  85 karadlelesspervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegee 180
                    + + d + +    +   +  t+l+ +L+++   r + + +++++ s+ +  +g+ +   ++++g       + ++GaDG++S+vr+ l  +++  +
     KKY18352.1 101 DEQFDRD-HLPEHARPEIDRTDLLEMLLHS--VRDAVMCWNHKIASVSD--DGILTFQSGRTAGPF-----DLVIGADGAWSKVRHVLTAPMPRYS 186
                    8888888.5555555567888888999888..34456678888886665..567788888888888.....9********************9999 PP

                    EEEEEEEEEEEEEC-SCCCTTC....CEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGSCCC CS
  FAD_binding_3 181 tvyeagvldvlfdadlsdivep....lvlilsaesrgvmviPlentlerfyvqvearaekeersek 242
                    ++  +++  ++ +++ +++++     +++ +s+  +      l       y + +++++ e+++e+
     KKY18352.1 187 GISGFQLRVLHGKERHPQVAQSigrgNHFCYSNGASLTG-QTLG---DGSYTLGTWGRRPESWPEE 248
                    997777666666667776666666776666666555421.1111...1245555555555555555 PP

  == domain 2  score: 35.1 bits;  conditional E-value: 3.3e-12
                    EEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHH CS
  FAD_binding_3 286 vflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqa 344
                      l+GDAaH ++P +G G+N+a+ Da +L + ++a+ + +A+++  ++ +e +ra+ + 
     KKY18352.1 312 FTLIGDAAHLMTPFAGEGVNVAMLDALELSTNIIAAFE-RASDQDVQSLDEAARAFEKG 369
                    569*********************************99.99999999999988888765 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1     8e-07    0.0021       1      45 [.       7      54 ..       7      73 .. 0.78
   2 ?   -3.1   0.0       3.8   9.7e+03      42      65 ..     355     378 ..     344     380 .. 0.63

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 8e-07
                   EE--SHHHHHHHHHHHCC..TEE.EEEE-SSSSSSGGG-EECETTCEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka..gfd.vlllekrdrlGGraasyevpgvrv 45
                   I+G+G +Gl++A lL      +d  +++e+ ++ + r++s    +  v
     KKY18352.1  7 IIGGGPAGLTLAKLLDSSphTRDcYTVFEADESASSRVHSGGSLDLHV 54
                   9**************9963244469*******9999998875544555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.8
                    T.CEECTS---EEETTHHHHCHHHH CS
  NAD_binding_8  42 g.vrvdygahifhgsgyypnvrrll 65 
                    + + +d  a++f + g +p++ +++
     KKY18352.1 355 DvQSLDEAARAFEK-GMFPRAHKVM 378
                    24667777888877.3567776665 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   1.2e-05     0.031       2      62 ..       5      72 ..       4     101 .. 0.71
   2 ?    3.2   0.0     0.022        56     188     299 ..     155     275 ..     116     334 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.2e-05
                EEEECTSHHHHHHHHHHHHTT.....EEEEESSSSTTSSGGGSSEEEE....ESSSSTHHSTHHHHHHHH CS
         DAO  2 vviiGGGiiGlstAyeLarrg.....VtllekgdiagsgaSgrnsgll....hsglrylpeaselarlsl 62
                ++iiGGG +Gl+ A  L   +      t++e++ + +  +  +++g l     sg++ l++a  +a++++
  KKY18352.1  5 IAIIGGGPAGLTLAKLLDSSPhtrdcYTVFEAD-ESA-SSRVHSGGSLdlhvESGIAALQKAGLYAEFVK 72
                89***************55445567********.655.57777777662222333344554444444444 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.022
                 EEE.EEEEEEEE--GGGHH..HHHTT.CTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEE.........TTSEEEEEESSE... CS
         DAO 188 gen.daadavVnaaGawsd..llgll.keldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtpr.........kdgrvlvGgtad... 270
                 g++   +d v+ a Gaws+   +  l  ++ ++ s++ g  l++ + +e   +p    +v   + + + ++++            dg+  +G+ +    
  KKY18352.1 155 GRTaGPFDLVIGADGAWSKvrHV--LtAPM-PRYSGISGFQLRVLHGKE--RHP----QVA-QSIGRGNHFCYSNgasltgqtlGDGSYTLGTWGRrpe 243
                 333335799********975422..22333.355888888888833333..222....222.3333333344443334434444555555555554766 PP

                 ...EETTCSSTSCSHHHHHHHHHHHHHHSGGG CS
         DAO 271 ...eesgdddpevdeedidellealrklfPql 299
                    ee +  +   + +  +++l+a r ++P++
  KKY18352.1 244 swpEEVKQMSNNDPMQIKEAILDAYRGWCPEF 275
                 66544444444555556666777777777774 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00013      0.33       2      22 ..       5      24 ..       4      40 .. 0.84
   2 ?   -2.1   0.0      0.57   1.5e+03      83     140 ..     116     169 ..     105     190 .. 0.74
   3 !    4.4   0.0    0.0062        16     243     335 ..     297     386 ..     288     406 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00013
  Lycopene_cycl  2 vvviGaGpAglslAarlteak 22
                   +++iG+GpAgl lA+ l ++ 
     KKY18352.1  5 IAIIGGGPAGLTLAKLL-DSS 24
                   79************988.544 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.57
  Lycopene_cycl  83 rvsskrlkeellerlvengvklleakvesveeeeageslvvleggr.kirarlvvdarg 140
                     + +++l e+ll+++  ++v   + k++sv ++       + + gr   +  lv+ a g
     KKY18352.1 116 EIDRTDLLEMLLHSVR-DAVMCWNHKIASVSDDGI----LTFQSGRtAGPFDLVIGADG 169
                    5789999999999988.999999999999988766....44555552334455555555 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0062
  Lycopene_cycl 243 iPvtlggslprleqk.vlaiGaaaglvhPaTGYsvarslaeapllasaiaaalresslsarawatlwprerkrqreffrllglalllkldiegr 335
                    +P+ +g  ++ ++++    iG aa l+ P  G  v  ++  a  l+  i aa +   +s++  ++l  ++r+ ++++f     ++++k   +++
     KKY18352.1 297 LPI-EGDGPRWTHKQgFTLIGDAAHLMTPFAGEGVNVAMLDALELSTNIIAAFE--RASDQDVQSLDEAARAFEKGMF-PRAHKVMKKTHRNKT 386
                    577.333333333334788*****************999999888877777777..4788888888888888888888.333345555555555 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.16     4e+02       4      22 ..     163     181 ..     161     194 .. 0.84
   2 !   13.3   0.0   1.2e-05     0.032     127     166 ..     307     346 ..     303     368 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.16
          SE   4 ltvvcDGifsklRkelsdn 22 
                 l + +DG +sk+R+ l+ +
  KKY18352.1 163 LVIGADGAWSKVRHVLTAP 181
                 7899*********998765 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.2e-05
          SE 127 nekkGlillGDalnmRHPltggGmtvalnDivllskllkp 166
                 ++k+G+ l+GDa  +  P  g G+ va+ D++ ls  +  
  KKY18352.1 307 THKQGFTLIGDAAHLMTPFAGEGVNVAMLDALELSTNIIA 346
                 6799**************************9977765433 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.3e-05     0.084       2      24 ..       4      26 ..       3      53 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.3e-05
                 SEEEE--SHHHHHHHHHHHHHTS CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqaga 24
                 ++++iGgGpAGl++a+ l  + +
   KKY18352.1  4 SIAIIGGGPAGLTLAKLLDSSPH 26
                 79*************99988554 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.5e-05      0.14       1      45 [.       6      48 ..       6      57 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.5e-05
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtd 45
                   ai+G+Gp+Gl++++ L ++  ++++   t+f+ +e+ + rv++  
     KKY18352.1  6 AIIGGGPAGLTLAKLLDSS--PHTRDCYTVFEADESASSRVHSGG 48
                   8*********988655555..699999999999888778888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 2619.13
//
Query:       KKY18353.1  [L=1152]
Description: putative cation-transporting atpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-47  159.0   8.2    9.6e-47  159.0   8.2    2.5  3  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    1.7e-36  125.4   0.3    1.7e-36  125.4   0.3    3.0  3  E1-E2_ATPase     E1-E2 ATPase
      6e-20   71.1   0.0    1.5e-19   69.9   0.0    1.7  1  Cation_ATPase    Cation transport ATPase (P-type)
    9.7e-18   65.2   0.1    2.9e-17   63.7   0.1    1.8  1  Hydrolase        haloacid dehalogenase-like hydrolase
    1.5e-08   34.2   0.4    1.8e-07   30.8   0.0    2.6  2  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    0.00064   19.5   0.1      0.013   15.3   0.1    2.3  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.021   13.7   4.0       0.51    9.1   3.8    2.3  2  LptF_LptG        Lipopolysaccharide export system permease Lp
       0.13   12.2   0.3       0.41   10.6   0.3    1.8  1  Ferlin_C         Ferlin C-terminus


Domain annotation for each model (and alignments):
>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2         3   6.7e+03     129     129 ..     196     196 ..     161     217 .. 0.42
   2 ?   -0.7   0.2      0.45     1e+03     125     174 ..     363     414 ..     317     428 .. 0.59
   3 !  159.0   8.2   4.3e-50   9.6e-47       2     180 ..     870    1041 ..     869    1043 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3
  Cation_ATPase_C 129 l 129
                       
       KKY18353.1 196 G 196
                      1 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.45
  Cation_ATPase_C 125 nkllllaillslllqvlivyvpglnavfgta...plsleewlialllalvvll 174
                      n ++ +a   ++ll+++++++ +l+++ + +    + ++e+l +l++a+ v++
       KKY18353.1 363 N-WIGGAGSSAALLLFFVLLIRFLAHLSSNEasaAVKGQEFLDILIVAITVIV 414
                      3.333333334455555555555444433323334455555555555554444 PP

  == domain 3  score: 159.0 bits;  conditional E-value: 4.3e-50
  Cation_ATPase_C    2 lplsaiqiLwinLvtDllpalaLaleppekdimkrpPrkkkepliskkmlrriliqgllqalvtllvffltlllfgisekenklssnyaqtm 93  
                       ++l+a+q+LwinL++D+l+alaLa++ p k+i++r+P++k++pli+++m+++i +q ++q++vt++++f+++++f +s++ +        tm
       KKY18353.1  870 SVLTAVQLLWINLIMDTLAALALATDAPTKKILDRKPEPKSAPLITINMWKMITGQTVYQLIVTFILYFAGPKIFPSSTSHA-----ELDTM 956 
                       79***********************************************************************996666553.....4**** PP

  Cation_ATPase_C   94 aFitlvlsqifnalnlrsrreslfkfsglfsnkllllaillslllqvlivyvpglnavfgtaplsleewlialllalvvllvdelvK 180 
                       +F+t+ ++qifn ln r++++++++f+++++n ++l++ +++++ q++i++v  ++++fg++++++++w ++l+ ++  ll++ +++
       KKY18353.1  957 VFNTFTWMQIFNELNNRRLDNKFNVFENVHRNFWFLGINAIMVGGQIMIIFV--GGQAFGITKINGWQWGVCLAASAPCLLWAIVLR 1041
                       ****************************************************..9**************************987665 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9   2.1       7.5   1.7e+04     123     157 ..     169     202 ..     164     212 .. 0.47
   2 !  125.4   0.3   7.6e-40   1.7e-36       5     180 ..     231     438 ..     227     439 .. 0.96
   3 ?   -1.4   2.4      0.66   1.5e+03     114     156 ..     839     879 ..     826     894 .. 0.79

  Alignments for each domain:
  == domain 1  score: -4.9 bits;  conditional E-value: 7.5
                   HHHHHHHHHHHHHS-STTTSSTT.....HHHHHHHHHHHH CS
  E1-E2_ATPase 123 vpvvlliallvflialllgksla.....eallralallva 157
                    +++ +i+l++ l+  + g+s +            a+ va
    KKY18353.1 169 LTIAAVISLALGLYETFSGGSQVdwvegV------AICVA 202
                   45555555555555555555554233221......22222 PP

  == domain 2  score: 125.4 bits;  conditional E-value: 7.6e-40
                   -EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.EEE-TTTS---S-EE-.................G-TTEE-TT-EEEE-EEEE CS
  E1-E2_ATPase   5 ptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsa.evdesaLTGEslpvek.................ekgdmvfsGtvvvsgeaka 83 
                   +++k ir+g+  +i + ++ +GD++ l++gd +paDg+ ++g+  ++des+ TGEs  ++k                 +    ++sG+ v++g  ++
    KKY18353.1 231 REVKAIRSGKSIQISVYDITVGDVLHLEPGDAIPADGIFISGHGvKCDESSATGESDQMKKtsghevwqqmndgtaskKLDPFIISGSKVLEGVGTF 327
                   78999*********************************************************************9986677789************* PP

                   EEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT...............HHHHHHHHHHHHHS-TTHHH CS
  E1-E2_ATPase  84 vVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla...............eallralallvaaiPcaLpl 165
                    Vt +g ++ +gki  +++++ +++tplq kl +l++++  ++  +all+f+++l+++  +                ++l+ a++++v+a+P++Lpl
    KKY18353.1 328 LVTSVGVNSSYGKILMSLQTE-NEETPLQVKLGRLANWIGGAGSSAALLLFFVLLIRFLAHLssneasaavkgqeflDILIVAITVIVVAVPEGLPL 423
                   *******************98.9*********************************88888888899999999999999999*************** PP

                   HHHHHHHHHHHHHHH CS
  E1-E2_ATPase 166 avplalalgarrlak 180
                   av+lala++++r+ k
    KKY18353.1 424 AVTLALAFATTRMLK 438
                   *************88 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.66
                   HHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHH CS
  E1-E2_ATPase 114 kldklgkvlvpvvlliallvflialllgkslaeallralallv 156
                    ++k+ ++ ++v +++++++f+ a++   +  e++l a++ll 
    KKY18353.1 839 AVKKFLQFQITVNITAVIITFVSAVSSSSN--ESVLTAVQLLW 879
                   567888888888888888888888665554..88888888875 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   6.6e-23   1.5e-19       1      89 [.     516     604 ..     516     606 .. 0.92

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 6.6e-23
  Cation_ATPase   1 ilcNsaafsensekdevkllGnktEsALlvlaekl..gldteelreetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkrCt 89 
                    i++Ns+af e +ek++ +++G+ktE+ALl la++     +  e r++ ++ q ipF+s rK+m+ v++l +++++rl+vKGA+ei+l+r +
     KKY18353.1 516 IVLNSTAF-EGEEKGVPTFIGSKTETALLTLAKDHlgLDSLAEERSNATIAQLIPFDSARKCMGAVIRL-KNGTYRLLVKGAAEILLSRAS 604
                    789*****.*************************98555677888888999******************.6*****************987 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.1   1.3e-20   2.9e-17       2     210 .]     456     797 ..     455     797 .. 0.72

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 1.3e-20
                 SEEEEESBTTTBCHHHHHHHHHHHH.......CHHHHHHHHHH......HHCHHHHHHHHHHHHH............HHHHHHHHHETTTE........ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxx......xxxxxxxxxxxxxxxx............xxxxxxxxxxxxxx........ RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsa.......alalaaaletg......sehpigkalvaaakar............sgaltgfatfigrg........ 67 
                 +t++ Dk+GTLt+ ++ v+  + s+                        s      +l +  k++            +g+ +g+ tfig          
  KKY18353.1 456 TTICSDKTGTLTQNKMTVVAGTLSIdesssttG---------DsygaksSFNATYSKLPKSVKDLfrdsivlnstafEGEEKGVPTFIGSKtetalltl 545
                 599*****************9999944444440.........034444422233333333333334332222222225555666666666677766666 PP

                 ......................HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH......................................... CS
                 ......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................... RF
   Hydrolase  68 ......................ayaigkpewltaldippdlgaaigsaqsqgrtvall......................................... 103
                                                                                                                    
  KKY18353.1 546 akdhlgldslaeersnatiaqlI----------------------------------Pfdsarkcmgavirlkngtyrllvkgaaeillsrassalasd 610
                 65555555555555555555441..................................033344444444444444444455555555557777777777 PP

                 .................................................................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEE CS
                 .................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 104 .................................................................qaralavftiadplkvkpeaaeavasLkaagiev 137
                                                                                  +   l+v+ i+dp  ++++++eava+ ++ g+ v
  KKY18353.1 611 lsgdtdvepisqeirahlagtiesyaehslrtigflykdfeqwppagaktleedksmvefddifhDMTWLGVVGIHDP--LREGVVEAVAQCQQSGVVV 707
                 888888888888888888999999999**************************************99***********..******************* PP

                 EEEESSEHHHHHHHHHHTT..........GGGE.SEEEEHHCES......STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxx..........xxxx.xxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 138 vlltgdnpetaeraanqlG..........ddyf.daviasdiet......vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                  ++tgdn +ta+++a  +G             f + ++a  +e+       a  spe+k+ ++  L+  +e va+ GDg nD +al+ A+
  KKY18353.1 708 RMVTGDNMTTAKAIATDCGimtpdalimeGPEFrQLSDADRNEAipklrvLARSSPEDKRILVASLKQLGETVAVTGDGTNDGPALKTAD 797
                 ***********************9999995555344444444446668888888************988999***************997 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.24   5.4e+02       4      25 ..      74      95 ..      72      98 .. 0.87
   2 !   30.8   0.0   7.9e-11   1.8e-07      28      69 .]     135     176 ..     129     176 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.24
  Cation_ATPase_N  4 lsleevlekLetdlenGLtqae 25
                     ++l+++++ L tdl  GL+ +e
       KKY18353.1 74 GGLNGLAKGLRTDLDAGLSVDE 95
                     678999************9876 PP

  == domain 2  score: 30.8 bits;  conditional E-value: 7.9e-11
  Cation_ATPase_N  28 erlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalvs 69 
                      +r++ +  N+l+e+k  s+wv+++k++++ ++ilL +aa++s
       KKY18353.1 135 DRIRIFKDNRLPERKADSIWVLIWKAYNDKILILLTIAAVIS 176
                      68888889********************************98 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0       0.1   2.3e+02      18      55 ..     691     728 ..     686     736 .. 0.87
   2 !   15.3   0.1   5.6e-06     0.013     203     244 ..     777     818 ..     768     829 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.1
                  HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC CS
  Hydrolase_3  18 ektkeaikklkekgikvviATGRslravlpvleelgld 55 
                  e  +ea++++++ g+ v   TG ++++++ ++ + g+ 
   KKY18353.1 691 EGVVEAVAQCQQSGVVVRMVTGDNMTTAKAIATDCGIM 728
                  56789***********************9999988875 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 5.6e-06
                  GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE- CS
  Hydrolase_3 203 leeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtk 244
                   e v++ GDg ND + L+ a++g+ mg a  ev k A+ ++ 
   KKY18353.1 777 GETVAVTGDGTNDGPALKTADVGFSMGIAGTEVAKEASSIIL 818
                  5789999*************************9999998875 PP

>> LptF_LptG  Lipopolysaccharide export system permease LptF/LptG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.032        72     220     319 ..     102     207 ..      53     216 .. 0.72
   2 ?    9.1   3.8   0.00023      0.51      13      82 ..     374     443 ..     370     449 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.032
   LptF_LptG 220 etferyridinldpadlsteeespdelslsel....kekikalrsegle...vrryraelhkrlalplacl..vfaliaaplglvkrrggrglr.llia 308
                 +tfe+ r+    +pa++s ++   d    sel    +  i+ +++++l+   ++ +++ ++k +   +++l  ++a+i+++lgl+   +g+     + +
  KKY18353.1 102 VTFEEARVGADAKPASTSFKDVHAD----SELkdrfYDRIRIFKDNRLPerkADSIWVLIWKAYNDKILILltIAAVISLALGLYETFSGGSQVdWVEG 196
                 5666666666666666666666655....3455556666666666666666566666888888887776662268899999****99999988885555 PP

   LptF_LptG 309 illfvlyyvll 319
                 ++++v+  ++ 
  KKY18353.1 197 VAICVAIIIVV 207
                 55555544443 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00023
   LptF_LptG  13 lvllvllfllllqdllryldllvgkglpvgdllelilynlpyilelalPlavLlavlltfgrLaedsElt 82 
                 l l+++l++ +l  l +   +++ kg  + d+l + +  +  +++  lPlav la+ ++ +r+ +++ l+
  KKY18353.1 374 LLLFFVLLIRFLAHLSSNEASAAVKGQEFLDILIVAITVIVVAVPEGLPLAVTLALAFATTRMLKENNLV 443
                 5566666666777777777789999*************************************99998886 PP

>> Ferlin_C  Ferlin C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3   0.00018      0.41     112     141 ..     151     181 ..     143     185 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00018
    Ferlin_C 112 KtfiffiWkkyk.kyiiallilallalflvl 141
                  ++ ++iWk y+ k++i+l i a+++l l l
  KKY18353.1 151 DSIWVLIWKAYNdKILILLTIAAVISLALGL 181
                 57889******999**********9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       929  (0.0518155); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:00.52
# Mc/sec: 6684.95
//
Query:       KKY18354.1  [L=1268]
Description: putative amine oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.4e-163  543.0   0.0   7.8e-163  542.2   0.0    1.3  1  Cu_amine_oxid    Copper amine oxidase, enzyme domain
      7e-81  272.2   3.2      7e-81  272.2   3.2    2.1  2  HSP70            Hsp70 protein
    2.4e-08   33.2   0.4      4e-08   32.4   0.4    1.3  1  MreB_Mbl         MreB/Mbl protein
    7.5e-08   32.5   0.0    1.9e-07   31.2   0.0    1.7  1  Cu_amine_oxidN2  Copper amine oxidase, N2 domain
    0.00036   20.9   0.0    0.00089   19.6   0.0    1.6  1  Cu_amine_oxidN3  Copper amine oxidase, N3 domain
  ------ inclusion threshold ------
          3    8.7   5.3          6    7.8   0.2    2.8  2  Tombus_movement  Tombusvirus movement protein


Domain annotation for each model (and alignments):
>> Cu_amine_oxid  Copper amine oxidase, enzyme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  542.2   0.0  2.6e-166  7.8e-163       2     408 ..     815    1220 ..     814    1221 .. 0.97

  Alignments for each domain:
  == domain 1  score: 542.2 bits;  conditional E-value: 2.6e-166
                     ----TT---SEEETTTEEEETTEEEEEEEETTTEEEEEEEEETTEEEEEEEEEEEEEEEE--SSHHHHH-EEEGGGT.-SGGG-----TTTSS- CS
  Cu_amine_oxid    2 evvqpeGpsfkvdegnlvewqkWsfrvgfnrreGlvlhdvrykgrrilyrlslsemvvpYgdprppasrkaafDlgeyglGklansLelgcDCl 95  
                     +vvqpeGpsfk+ +gnl+ew+k++frvgfn+reGl++hdv+y++r+++yrlslsem+vpYgd+r+p+ rkaafDlg+ g+G +an+L+lgcDCl
     KKY18354.1  815 QVVQPEGPSFKI-TGNLIEWEKYRFRVGFNYREGLTIHDVTYDERSLFYRLSLSEMFVPYGDSRAPYPRKAAFDLGNNGAGVNANNLQLGCDCL 907 
                     89**********.8******************************************************************************** PP

                     TT-EEEEEEEEE..TEEEEEEEEEEEEEEE-S-SEEEE-S....EEEE--EEEEEEEEEEETTEEEEEEEEE-TTS-EEEEEEEEE----EE-T CS
  Cu_amine_oxid   96 geityldavladssgepvtiknaiCifEedagilwkHtdfrtgraevtrnreLvvrtiatvgNYdYifdyiFkqdGsievevratGilstaala 189 
                     g+i+y+d+++++ +g+pv+ +na+C++E d+gilwkHt++rt++a+vtr+r Lv++ti+tvgNY+Yif++ F qd+++ +evratGilsta+++
     KKY18354.1  908 GTIKYFDGWHHTIAGDPVKFPNAVCCHEIDDGILWKHTNYRTNNAVVTRSRVLVLQTIITVGNYEYIFAFLFGQDATVSYEVRATGILSTAPID 1001
                     ********************************************************************************************** PP

                     .....GG--EEETTEE---EEEEEEEEEEE-T.SSEEEEEEEEE-T..TT.T-...-EEEEEEEEEE--BGGG-EE--.-GG-EEEEEEEEEEE CS
  Cu_amine_oxid  190 eeeeskygtrvapgvlasiHqHlfslrvDldidgeknsvveeelvpeepelgeenpagnafkvektvletekeaaldldpeknrvlkivnenkk 283 
                      +++ +ygt vapgvla++HqHlfslr+D++idg+kn++v ee++++ p+ ++ np g ++ ++++++  e  +aldld ++nr++ki+ne++ 
     KKY18354.1 1002 IGDKVDYGTIVAPGVLAPYHQHLFSLRIDPAIDGQKNTLVVEESHAM-PTDDPLNPFGIGYITTSKPVLLE--TALDLDVSTNRTFKITNESRL 1092
                     99999****************************************96.777889*****************..88999999************* PP

                     -.TTS-EEEEEEE-S----..---SS-TTTTTTTGGGG-SEEEEE--TT---S--TTGG-TTS.---GGGG-.S--.....B-SSEEEEEEEEE CS
  Cu_amine_oxid  284 n.klgepvgYklvpssaasqlllakesslvakraefakhhlwvtkykdselyaageynnqskgepvglakwvedne.....sieneDlVvWvtl 371 
                     n ++g+p +Yklvp  ++sq+lla++ss++a+r ef++h++wvtky+d+ely++g++++qs g  +g+++w++++      +++neD+VvW+t+
     KKY18354.1 1093 NpHSGTPISYKLVP--HYSQMLLASPSSFHARRSEFTTHAVWVTKYHDHELYSSGDHTMQSLGG-EGIESWIKNRAdgkpqNVRNEDIVVWHTF 1183
                     **************..6799*******************************************5.7******87655555588*********** PP

                     EEEE---GGGSS-TTTSEEEEEEEEES-SSS-GGGG- CS
  Cu_amine_oxid  372 GltHvpraeDfPvmpvetvsflLkPvnFfdenpaldv 408 
                     G+tH+pr+eD+Pvmp+e ++++LkPvnFfd+npa+dv
     KKY18354.1 1184 GTTHNPRVEDWPVMPCERMTVMLKPVNFFDRNPAIDV 1220
                     ***********************************98 PP

>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.2   3.2   2.4e-84     7e-81       1     442 [.      18     476 ..      18     482 .. 0.87
   2 ?    2.6   0.3      0.01        31     447     499 ..     522     571 ..     513     575 .. 0.83

  Alignments for each domain:
  == domain 1  score: 272.2 bits;  conditional E-value: 2.4e-84
                 EEEEEEXSSEEEEEEEE.TTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBE. CS
       HSP70   1 viGiDLGttnsvvavme.ggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengka. 97 
                 +iGi  G+ ns +a    +gk+evianeeg+r  Psv+++ + e   G++Ak+q v+n +ntv++++ ++G++f+   ++   ++ + + +++e g a 
  KKY18354.1  18 AIGISFGNSNSSIARTSvEGKAEVIANEEGDRQIPSVLSYIDGEEFHGTQAKTQLVRNHQNTVQNFRDYLGKDFKS--IDPTPSHNSAHPQEHEAGVAf 114
                 59***********96652899*****************************************************98..888888888888888777651 PP

                 EEEEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSS..SCEEEEEEE CS
       HSP70  98 vveveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkd..kernvlvyD 192
                  ++ + a+e  + + ++i ++ L++l + a++ylgk+v+ avi++P+ f+d q+     A+k AG++vl  + ep Aa laY  +++   k++ ++v D
  KKY18354.1 115 SIRDAEAEEpnTRSVSEIVTRHLRRLASSASDYLGKTVNSAVISIPTDFTDVQKDELTKAAKAAGIEVLQFIPEPIAAVLAYDAKSDMqvKDKLIVVAD 213
                 4555555557788899999999************************************************************987665889******** PP

                 EXSSXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEE CS
       HSP70 193 lGggtfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdlse 291
                 lGg   dv +++   G++ ++aT  D +lGG + D++lv+h+++ef kk++ d ++++k l +lk + e +Kk+LS+  +++++ +ie++ + g+d+++
  KKY18354.1 214 LGGNRSDVAVVASRGGMYTILATHHDPELGGVQLDQVLVDHFAKEFIKKNKTDPRSNQKSLAKLKLESEAVKKSLSQ--SASATASIESLAD-GVDFNS 309
                 *****************************************************************************..89999999**999.****** PP

                 EEEHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTT....CHH...BSSSHTTTHHHHHHHHHHHHHCTCGCSHC CS
       HSP70 292 klsRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg....kep...sktvnpDeavaiGAAvqagvlsgeeevkd 383
                 +++R ++e l+++++ +  e +++ +k a+l++ +ide++l GG++  Pk+ + +k +f     + p   ++++np e  a+GAA+qa + +  +e +d
  KKY18354.1 310 TINRTRYELLASKVFGKFAELIQESVKKAELDVLDIDEIILSGGTSHTPKIASNLKYIFPssdiQAPsasTTAINPSELAARGAAIQASLIEE-FEKDD 407
                 **********************************************************964223333222578****************9887.44444 PP

                 C.....EEEEBES.S-..EEEE....ETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSB CS
       HSP70 384 l.....lllDvtp.Ls..lgie....tlggvmtkliernttiptkksqvfstaadnqtaveievlqgerel 442
                 +     + l vtp Ls  +g+e    t+g v++ li   t+ p++++  +++ a +  +v ++v +ge e+
  KKY18354.1 408 IdqsthAALTVTPhLSkaIGVEltrsTEGSVFEPLIYADTAAPARRT--VQLKAPGEGSVLVKVCEGESEI 476
                 32222256667775553355552222678889999999999998875..4555667778888998888775 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.01
                 EEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEET.TTCCEEEEEEECC CS
       HSP70 447 kllgsfeldgippaprGvpqieVtfdidanGiltvsakdk.etgkeeeitieas 499
                 k+l++ +++gi+     ++++eVt++++++  ++v+a+   ++g +++++i+ s
  KKY18354.1 522 KSLAEISIEGIK----KNDKVEVTVNVNPDLSVQVTARVVgSKGGTQDMNIKGS 571
                 788889999998....899******************98867778888888765 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.4   1.4e-11     4e-08      75     294 ..     134     365 ..     128     404 .. 0.67

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1.4e-11
                 HHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHH..TT--TTSS.S-EEEEEE-SS-EEEEEE.ETTEE.. CS
    MreB_Mbl  75 eellkyfikkvkkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiG..aglpveep.sgnmvvdiGggttevavi.slggi.. 167
                  + l+++ + +++    + ++ vi++P++ t+v++  +++aak aG +  + i ep+aA +   a  +++   +  +v d+Gg  ++vav+ s gg+  
  KKY18354.1 134 TRHLRRLASSASDYLGKTVNSAVISIPTDFTDVQKDELTKAAKAAGIEVLQFIPEPIAAVLAydAKSDMQVKdKLIVVADLGGNRSDVAVVaSRGGMyt 232
                 5556666666666666677889*************************************88622434444330334566**********9845677622 PP

                 ..EEEEEES-SHHHHHHHHHHHHHHHH......SEE--HHHHHHHHHHH-BSS--HHHH.EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHH CS
    MreB_Mbl 168 ..vtsksvrvaGdeldeaiikyirkky......nlliGertaekikieigsavkeeeee.kmeikGrdlvtglpkevevsseevrealkepvsaiveav 257
                    t +   ++G +ld+ ++++  k++      +    +++  k+k+e  +++k+ +++ + + +   l+ g+  + +++ ++ +   ++++ +  e +
  KKY18354.1 233 ilATHHDPELGGVQLDQVLVDHFAKEFikknktDPRSNQKSLAKLKLESEAVKKSLSQSaSATASIESLADGVDFNSTINRTRYELLASKVFGKFAELI 331
                 1134567789********998877776221100122233334444444444444333334566666777788888888888877777777777888888 PP

                 HHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHH CS
    MreB_Mbl 258 kevLektppeLaadivdrgivltGGgallkgldklls 294
                 +e  +k+  +   di    i+l+GG++    + + l+
  KKY18354.1 332 QESVKKAELDV-LDI--DEIILSGGTSHTPKIASNLK 365
                 88777654432.244..35888888888777766554 PP

>> Cu_amine_oxidN2  Copper amine oxidase, N2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   6.4e-11   1.9e-07       1      81 [.     580     665 ..     580     670 .. 0.78

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 6.4e-11
                      HHHHHHHHHHHHHCCCCCCCCTCT-TTSEEEEEEEEE---HHHHHHH..HHCH---...S-EEEEEE.EEETSSS.SEEEEEEEEEEC CS
  Cu_amine_oxidN2   1 hpLdaltaaeinkvesilkssaletskknsffeveLeePdKkavlqf..lekgepp...ppRkAsvv.ilfGkqt.kelvvdLatgkl 81 
                      hpLd+l+++ei+ v + +++s+  + + + f  ++L+eP+K+  l f   e g++    p R+A+v   l+G ++  e  v+  tgk+
       KKY18354.1 580 HPLDPLSPQEISSVAQSIRDSH--RGSRIVFRVITLLEPPKAQLLPFleAEHGGRFiapPTRTAQVQyYLEGPDKfREVNVEVDTGKI 665
                      9*********************..9**********************44344555366699999984145665554444466666665 PP

>> Cu_amine_oxidN3  Copper amine oxidase, N3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0     3e-07   0.00089       5      79 ..     680     756 ..     677     768 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3e-07
                      HHHHHHHHHHHHTGGGGHHHHHHHH.TTT.T---EEEE--SS-SSST.T--EEEEEEEE--SSS...-GCGSEEE.EEE CS
  Cu_amine_oxidN3   5 leelaeieevikelpqfkealkkrg.ienldkvvltpltvgyrgeksegkRllkalvyyrtesa...nlyahPiegLel 79 
                      + e++e e +   ++ +++ l++   +e+ + v++ p+t g +g ++ g+R +    y+r++s    n +a P++ +++
       KKY18354.1 680 AVEMQESEVACLADERVQKELQSLDlPED-AVVCIEPWTYGTDGMNDMGRRIIMCYFYMRIGSHgdaNHFAYPLD-ICA 756
                      67888999999999999999999997776.889999************************9998889********.886 PP

>> Tombus_movement  Tombusvirus movement protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2     0.002         6      17      62 ..     261     307 ..     249     312 .. 0.85
   2 ?    1.6   1.1      0.17   5.1e+02      58      67 ..     536     545 ..     534     545 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.002
  Tombus_movement  17 kkkkagkrgkkk..akrsvAsdAvrkkreskdasnGgswvlvADKveV 62 
                      kk+k + r+++k  ak +  s+Av+k   s++as+ +s    AD v+ 
       KKY18354.1 261 KKNKTDPRSNQKslAKLKLESEAVKK-SLSQSASATASIESLADGVDF 307
                      89999*******************96.889999999999999998875 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.17
  Tombus_movement  58 DKveVsInfN 67 
                      DKveV++n+N
       KKY18354.1 536 DKVEVTVNVN 545
                      9*******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      627  (0.0349713); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.54
# Mc/sec: 7056.61
//
Query:       KKY18355.1  [L=246]
Description: putative exosome complex exonuclease rrp40 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-14   53.2   0.4    4.5e-14   52.5   0.4    1.4  1  KH_6      KH domain
      3e-05   23.9   0.3    6.8e-05   22.7   0.3    1.6  1  Rrp40_N   Exosome complex exonuclease Rrp40 N-terminal domain


Domain annotation for each model (and alignments):
>> KH_6  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.4   5.1e-18   4.5e-14       1      44 [.     155     206 ..     155     208 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 5.1e-18
        KH_6   1 GmlfeVslslvrRll....nhvLeeLgka....gpfeiavGlNGriWvkses 44 
                 Gm+ eVs++++ Rll    +++L+eLg +     +fe+avG+NG++Wv++ +
  KKY18355.1 155 GMVWEVSTGFATRLLkregVVILDELGSKmkatKGFEVAVGKNGKVWVDCGE 206
                 9*************************977778855***************87 PP

>> Rrp40_N  Exosome complex exonuclease Rrp40 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.3   7.6e-09   6.8e-05       9      44 ..      24      59 ..      21      63 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 7.6e-09
     Rrp40_N  9 kLGPGL.rhtPplstliatraGiLhtkpkkqalwiEs 44
                +LGPG+ ++ ++ s+ +at aG L++++kk ++ i +
  KKY18355.1 24 RLGPGVhQSRST-SATVATAAGLLTHNQKKRTIAITH 59
                8*****656665.99***************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.55
# Mc/sec: 1356.30
//
Query:       KKY18356.1  [L=82]
Description: putative 40s ribosomal protein s27 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-28   98.8   6.7    1.3e-28   98.5   6.7    1.1  1  Ribosomal_S27e  Ribosomal protein S27
  ------ inclusion threshold ------
       0.31   11.0   5.9          2    8.4   4.2    2.3  2  zf-C2HC5        Putative zinc finger motif, C2HC5-type


Domain annotation for each model (and alignments):
>> Ribosomal_S27e  Ribosomal protein S27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   6.7   1.4e-32   1.3e-28       1      55 []      28      82 .]      28      82 .] 0.99

  Alignments for each domain:
  == domain 1  score: 98.5 bits;  conditional E-value: 1.4e-32
                    -S--EEEEE-TTTS-EEEEESS-SS-EEESSSTCEEEEECSSSEEESSCEEEEES CS
  Ribosomal_S27e  1 prskFldvkCpdCenetvvFshaatvvkCisCgkvLvePtGGkaklkaqilerlk 55
                    prs+F+dvkCp+C+ +t+vFsha+tvv C  C++vL++PtGGka+l++++++r+k
      KKY18356.1 28 PRSFFMDVKCPGCFTITTVFSHAQTVVICAGCSTVLCQPTGGKARLTEGCSFRRK 82
                    89***************************************************97 PP

>> zf-C2HC5  Putative zinc finger motif, C2HC5-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.025   2.2e+02       7      18 ..      15      26 ..      13      27 .. 0.86
   2 ?    8.4   4.2   0.00023         2       8      39 ..      44      79 ..      36      81 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.025
    zf-C2HC5  7 qatrHpLleaap 18
                +a++H+L +++p
  KKY18356.1 15 EARKHKLKTLVP 26
                69*****99887 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00023
    zf-C2HC5  8 atrHpLleaapnClnCGkiiCakegls....kpCsf 39
                 t    ++++ +C  C  ++C+  g +    + Csf
  KKY18356.1 44 TTVFSHAQTVVICAGCSTVLCQPTGGKarltEGCSF 79
                55555567899***********99887666677877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.47
# Mc/sec: 522.61
//
Query:       KKY18357.1  [L=270]
Description: putative dihydrofolate reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-62  208.6   0.0    9.6e-62  208.4   0.0    1.0  1  FSH1           Serine hydrolase (FSH1)
  ------ inclusion threshold ------
      0.089   12.6   0.0         31    4.3   0.0    3.0  3  Abhydrolase_2  Phospholipase/Carboxylesterase


Domain annotation for each model (and alignments):
>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.4   0.0   1.1e-65   9.6e-62       3     210 ..       6     240 ..       1     242 [. 0.95

  Alignments for each domain:
  == domain 1  score: 208.4 bits;  conditional E-value: 1.1e-65
        FSH1   3 kkkkiLcLhGytqsgeiFraktsalrkllkk..lnvelvyldaplelaekadlpkseseeee.kseeeeesraWfrkkde..kneyegleesldavkdy 96 
                 +++kiL+LhGytqsgeiF+ kt+al+k+l k   + +lvy+++pl+l +++d+p+ ++++ + ++ ++ es+aW+r+ d+  + ey+g++e+ ++++++
  KKY18357.1   6 SPLKILMLHGYTQSGEIFHGKTRALEKHLVKafPGSKLVYPTGPLRL-RPSDIPGFDAAKFQtNDDDDVESFAWWRRADDsdPVEYKGFDEGAATIANV 103
                 789****************************9999************.*******987777678889999********999999*************** PP

        FSH1  97 ikengpfdGiiGFSqGaalaallaslleellkea......................shpslkfailvsGfkleepkyeeyyeedkiqtptLhvlGelDt 173
                 + ++gpfdG+iGFSqGa  aa++aslle  ++++                      +hp+lkf+i +sGf++++ +y+++y +++i+tpt h+lG+lDt
  KKY18357.1 104 LATEGPFDGVIGFSQGASAAAMVASLLEGPQRRKsfedfhagnplcipypdsftklDHPPLKFCIPYSGFAAPGIRYQAFY-NPPIATPTCHFLGSLDT 201
                 ****************************9999889**********************************************.***************** PP

        FSH1 174 vvdeerseaLaeafkns..skvlkHpggHfvPnkkeyvd 210
                 +vde+r ++L++ +  +  ++vl+HpggH v  ++++++
  KKY18357.1 202 LVDEARGRTLVDGCGGEakTQVLFHPGGHIVNCSRPFLN 240
                 ***************9999***********977777665 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.011        96      17      54 ..      10      52 ..       2      75 .. 0.75
   2 ?    4.3   0.0    0.0035        31     109     119 ..     113     123 ..      86     136 .. 0.71
   3 ?    2.0   0.0     0.017   1.5e+02     132     178 ..     166     211 ..     156     250 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.011
                   EEEE--TT--S.....HHHHHHHH.TT--TTEEEEEE---EEE CS
  Abhydrolase_2 17 viflHGlGdsg.....hawaeaakteaalpnikfifphgpelp 54
                   +++lHG+  sg     +  a+    + a+p  k++ p gp ++
     KKY18357.1 10 ILMLHGYTQSGeifhgKTRALEKHLVKAFPGSKLVYPTGPLRL 52
                   7899*******98844444555566788999999999999754 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0035
                    EEEETHHHHHH CS
  Abhydrolase_2 109 igGFSqGaala 119
                    ++GFSqGa  a
     KKY18357.1 113 VIGFSQGASAA 123
                    46777777544 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.017
                    EEEEES---TTGGGTTTTS-GGGGG-EEEEEEETT-SSS-HHHHHHH CS
  Abhydrolase_2 132 givafsgalplsqklessatavtkklpilqiHgeeDpvvplalgkaa 178
                      + +sg++++ +  + ++ + + ++p ++  g+ D +v+ a g ++
     KKY18357.1 166 FCIPYSGFAAPGIRYQ-AFYNPPIATPTCHFLGSLDTLVDEARGRTL 211
                    5677899999988888.56667789**************98877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 1688.07
//
Query:       KKY18358.1  [L=915]
Description: putative oligopeptide transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-92  309.2  43.9    9.2e-92  308.6  43.9    1.2  1  OPT              OPT oligopeptide transporter protein
  ------ inclusion threshold ------
       0.21   11.9   0.2       0.47   10.8   0.2    1.5  1  Flu_NS2          Influenza non-structural protein (NS2)
       0.38   10.5   3.7       0.58   10.0   0.3    2.2  2  CCDC92           Coiled-coil domain of unknown function


Domain annotation for each model (and alignments):
>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.6  43.9   1.5e-95   9.2e-92       1     615 [.      76     704 ..      76     705 .. 0.85

  Alignments for each domain:
  == domain 1  score: 308.6 bits;  conditional E-value: 1.5e-95
         OPT   1 elTlRavvlGillgvlgsavnmyfglrtglvsissipaallafplgkalarilpklslnpgpftikEnvliqtmasaaatla..latglivvipalely 97 
                 ++T+Rav++G +lg +++a+n+y+gl+tg+++ +s++ ++ +f+++k l++ilp   +  g f +kEnv++q++a aa++l   +a+g+ ++ ++  l 
  KKY18358.1  76 QFTVRAVLVGCILGGVIAAANVYLGLKTGWTFGASLFGSIFGFAILKPLSKILPS-QFGGGYFGPKENVCCQSAATAAGSLGllFASGFPAAYQLG-LL 172
                 69*****************************************************.889999***************9987511456665544333.47 PP

         OPT  98 gqsag..fgylillslsvqllGvgfagplRkflvypeklifPsglataellkalhkpegee...ksrlkfflivflgsfvwglfplylfpalssfswlt 191
                 g+s++  f++li ++ + ++ G++fa+plRk+ v+++kl+fPs++a a+ ++++h ++++e    ++ + ++++f+ ++ w  + +y   ++ ++ w+ 
  KKY18358.1 173 GKSPKedFAKLITFTACCAYYGMFFAIPLRKLYVVKQKLVFPSATAAAHTIRSMHVGKNAEvyaRKKTNALAVAFALAITWRCVSEYAPGIMWDWHWG- 270
                 8887789***************************************************999**9999*********************99999*9999. PP

         OPT 192 wiapknvvlanlf..glgllp.ltfdwnviaayiGsglivplwvavnmliGavlswgiliPll.yysngwypaylpydvteildedgvldyekyigygl 286
                 w++ +      l   g+ ++  + + w++++a+iG+gl+v+++ a ++ +Gavl+wgi+ P+l + ++ +  a  p +    ++  g+  ++   + ++
  KKY18358.1 271 WTFYR------LGwhGMIYAEnWNWVWEWTPAFIGVGLLVGPNSAYSFSGGAVLAWGIIGPALvTTGKAFGEAASP-EYPGYMNYMGMVLDDPVHQPSP 362
                 77777......55779999999*****************************************7777777777777.4445566444444455555555 PP

         OPT 287 mll...aalvallylvqfaaitllivhtilkhgkdikaalksa........rsprteeddrhrrlmrkykdvpmwwylallvlslvigiivvealftql 374
                  ++   +++  l+            +  ++ ++k +++++ +         r+ +++ + + +     +++vp+w++  +l+ls ++  iv+ +   + 
  KKY18358.1 363 RYWliwPGTLLLI---------TGAFAELFANYKMLWKSFVHLlspfirkfRQTEMTIEAVIDDPAPPHEQVPWWMWSGGLLLSCTFTCIVLGF-QYGQ 451
                 4440114444443.........3333444444444444444444444444455688888888888888999**********9988888885555.5788 PP

         OPT 375 pvwglllalllafllaivsaiiaGltglnpvsgigkltqlifgallpg......rpvanlvfgavvyaaaaqagdfmqDLKtGhllkasPraqfvaqli 467
                 +v+++++++++af++++++a   G t++ pv+++g +tql++g +++g      + + n++ g+v+ aa  q++d++ DLKt+hll+asPr qf+aq++
  KKY18358.1 452 NVGVSIISIIFAFIFSFIGAESCGRTNIIPVTSLGNATQLVVGGVTKGhysvpdAQLLNITGGMVALAASEQSADMLGDLKTTHLLRASPRVQFYAQMV 550
                 999*********************************************7777766999999999*********************************** PP

         OPT 468 Gtlvgavvniavlkllvkaygdict..adasnaftaPqakvfaavavllvggk.....kglpwafllgavapfilllllkk.fpkkstarklplplafa 558
                 G+lv+++ +++++ l+  ay+ i     +   af+aP+++ ++a+a+ +v+ k     +    + ++ ++++ i+++++k  + ++ + + +p  +a++
  KKY18358.1 551 GALVSIFMSVGIYVLFSEAYPCINSlaGQDHCAFPAPDVAAYRAIAI-AVTAKttpipP-SSGYTAIALGIFSIAMTIVKYrWIPVNKQHFVPNFVAMG 647
                 *********************99889888899***************.77777666633.33333355555556666666669989999999******* PP

         OPT 559 vgfylppsl.sialligglianlwlkrrdaewakkynyvlaaGLiaGealmgviiafl 615
                 ++f+l++++  +a++ g+++a lw++ + ++++ +y+y++aaG+iaGe+l g++ a+l
  KKY18358.1 648 IAFILNTTTyPTAVAFGATVALLWKR-NFPMAFGMYCYAVAAGMIAGEGLGGIVGAVL 704
                 ******99977799************.***************************9876 PP

>> Flu_NS2  Influenza non-structural protein (NS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   7.8e-05      0.47      27      61 ..     866     900 ..     855     911 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.8e-05
                 XXXXXXXXX-CHHHHHHHHHHHHHHHHHHHHHC-- CS
     Flu_NS2  27 dlhslqnrnekwreqlgqkreeirllieelrhklk 61 
                  + + q r ++  e+lgq + +i+ ++eelr ++ 
  KKY18358.1 866 KYKAAQTRSDEQSEELGQAKTTIKQAVEELRSQIE 900
                 588899************************96654 PP

>> CCDC92  Coiled-coil domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   9.7e-05      0.58      23      48 ..     812     837 ..     807     845 .. 0.88
   2 ?    1.0   0.3      0.06   3.6e+02      22      30 ..     901     909 ..     894     910 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 9.7e-05
      CCDC92  23 kgLHkEIekLqkenkdLtfklimeeg 48 
                 k+LHkE +kL k  ++L +++ m e+
  KKY18358.1 812 KKLHKEAHKLWKAARELAQETPMAEE 837
                 89*******************99886 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.06
      CCDC92  22 LkgLHkEIe 30 
                 L++LH+EI+
  KKY18358.1 901 LEKLHNEID 909
                 99******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (915 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1298  (0.0723967); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.50
# Mc/sec: 5464.49
//
Query:       KKY18359.1  [L=462]
Description: putative l-lactate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   6.5e-106  354.3   0.0   7.7e-106  354.0   0.0    1.1  1  FMN_dh        FMN-dependent dehydrogenase
    8.1e-06   25.1   0.1    1.6e-05   24.1   0.1    1.5  2  IMPDH         IMP dehydrogenase / GMP reductase domain
    0.00084   18.6   0.1     0.0012   18.1   0.1    1.2  1  Glu_synthase  Conserved region in glutamate synthase
     0.0094   15.3   0.0      0.021   14.2   0.0    1.5  1  ThiG          Thiazole biosynthesis protein ThiG


Domain annotation for each model (and alignments):
>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.0   0.0  1.7e-109  7.7e-106       1     346 [.      52     448 ..      52     450 .. 0.90

  Alignments for each domain:
  == domain 1  score: 354.0 bits;  conditional E-value: 1.7e-109
                 HHCCS-HHHHHHHH--STTSHHHHHHHHGGGGEEE---SSSS-SS-B--EEETTEEESSSEEE--BSTGGGTSTTHHHHHHHHHHHHTS-EEEETT-SS CS
      FMN_dh   1 ArkrlpkkafayvaggagdevtlrenraaferirlrprvlrdvskvdlsttllGqklslPvliaPvglaklahpdgelalaraaakagipfvlstvast 99 
                 Ar+r+p++ f yv g a + +t+ +nraaf+r+rl+pr+l++v+++dls++l+G+++++P+l+aP+g+++++h+d+e a+ara+++++ip++lst+a+ 
  KKY18359.1  52 ARQRIPAQNFGYVYGSASTASTHGANRAAFDRYRLKPRMLVNVTRRDLSVELFGTRYPTPLLAAPIGVQGILHRDAEDATARACKDLQIPMILSTAADR 150
                 89************************************************************************************************* PP

                 -HHHHHHHHT..T-EEEEEE-C..SSHHHHHHHHHHHHHCTESEEEEESSTSS---BHHHHHCT-.-BSTT-T.G..TTGGGSTSGSCCTTH....... CS
      FMN_dh 100 sleevaaaae..gplwfqlyvp..kdrelteellkraeaagykalvltvDtpvlgkRerdlrngf.slppklklrn.llqelakpewaaeal....... 185
                 s+e++aa+++  g++wfqly+p  +d+ +t +ll+ra+++gy+alv+t+Dt +lg+R  dl++++  +p + + +  +++ +++ ++ +++        
  KKY18359.1 151 SIEQIAASNGprGHRWFQLYWPrpQDDCVTISLLDRAAQSGYTALVVTLDTFTLGWRPTDLDTSYlPFPWGQGCAVgFTDPVFNARYLESQRqqslvpl 249
                 *******644447********9667888999********************************6536666655433366666666666665599***** PP

                 .............................THHHHHHCCCHB.-TC--HHHHHHHHHHHS..SEEEEEEE-SHHHHHHHHHT.....TESEEEE--GGGT CS
      FMN_dh 186 ...........................kkasaaaefvgkql.dpsltwddikwlreqtk..lplvvKGvltaedakravea.....GvdgivvSNHGGR 249
                                            ++ +++++++++++ ++  +w+++  lr++++  lp+++KG++t+ da++a+++        gi+vSNHGGR
  KKY18359.1 250 tarlaeswnllrrpgtlygalrmllnaSTLRKSQAWISTTYsNTYHDWSQLCLLRSHWPshLPILLKGIQTVSDAHLAIKHlgpdlSRAGIIVSNHGGR 348
                 ************************9976666666888876625566************9889*****************8643222578********** PP

                 SSTT---HHHCHHHHHHH..H..S.S-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHCGG CS
      FMN_dh 250 qldgapatidvLpeivea..vggr.ievlvDgGirrGsDvlkAlalGAdavllGRpflyglaagGeeGvervleilraelertmallGvksvaeldrsl 345
                 qldga++++++L +i++   v+++ i++l+D+Gir+GsDvlkAlalGA+avl+GRp++ygla++GeeGv++v+++l+ el++++a lG + +++l+r+ 
  KKY18359.1 349 QLDGAVSSLHALDRIAADplVRESgITILFDSGIRTGSDVLKALALGAQAVLIGRPYAYGLAIKGEEGVKHVFKCLTGELDNALANLGKTGLRSLGRED 447
                 ***************5542256544*********************************************************************99986 PP

                 E CS
      FMN_dh 346 l 346
                 l
  KKY18359.1 448 L 448
                 6 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       1.3   5.8e+03      35      53 ..     311     329 ..     308     331 .. 0.86
   2 !   24.1   0.1   3.5e-09   1.6e-05     202     240 ..     368     406 ..     348     440 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 1.3
                 SSEEE-SSTTT-SHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       IMPDH  35 iPlvsaamdtvtesemAia 53 
                 +P++   ++tv+++++Ai+
  KKY18359.1 311 LPILLKGIQTVSDAHLAIK 329
                 688889999******9985 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 3.5e-09
                 HHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 202 aakkagvpviaDGGikysgdivkAlaaGadavmlGslla 240
                  +++ g++++ D Gi++  d+ kAla+Ga+av++G+  a
  KKY18359.1 368 LVRESGITILFDSGIRTGSDVLKALALGAQAVLIGRPYA 406
                 67899******************************9766 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   2.6e-07    0.0012     274     304 ..     373     403 ..     357     426 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.6e-07
                   G-EEEEESS--SHHHHHHHHHHT-SEEE-SH CS
  Glu_synthase 274 rvsliadGglktgadvvkalalGAdavgigt 304
                    +++  d g++tg dv+kalalGA+av ig+
    KKY18359.1 373 GITILFDSGIRTGSDVLKALALGAQAVLIGR 403
                   478999***********************98 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   4.6e-06     0.021     170     204 ..     368     402 ..     355     408 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.6e-06
                 HHHH-SS-BEEES---SHHHHHHHHHTT-SEEEES CS
        ThiG 170 iieeakvPvivDAGigspsdaaqamelGadavlln 204
                 +++e  + ++ D Gi++ sd+ +a+ lGa+avl+ 
  KKY18359.1 368 LVRESGITILFDSGIRTGSDVLKALALGAQAVLIG 402
                 67888999*************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.54
# Mc/sec: 2577.47
//
Query:       KKY18360.1  [L=540]
Description: putative gamma-tubulin complex component gcp5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-08   33.8   0.2    5.4e-08   32.8   0.2    1.5  1  GCP_N_terminal  Gamma tubulin complex component N-terminal
    2.8e-08   33.6   0.3    2.8e-08   33.6   0.3    2.2  3  GCP_C_terminal  Gamma tubulin complex component C-terminal
     0.0011   17.4   3.2     0.0053   15.2   2.6    2.1  1  GCP5-Mod21      gamma-Tubulin ring complex non-core subunit m


Domain annotation for each model (and alignments):
>> GCP_N_terminal  Gamma tubulin complex component N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.2   9.1e-12   5.4e-08       1     147 [.     218     361 ..     218     381 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 9.1e-12
  GCP_N_terminal   1 lrdllylLqGisgkli.rfdekddervvkdvrlpgllppslrslverllelgtlyrrlrkfveevsrsesglvlqalaaaldeelteyyrliaql 94 
                     +r+ +++L+G++ +l+ r+d   +  + k  ++++l   s ++ +  l  lg ++ ++r fv++   +++  v+q +++a++++lt+++ +++  
      KKY18360.1 218 IREGIFMLLGLPASLFwRVDGFIE--IDKRYKISRLGYTSSQGALRFLGLLGMQVDHVRLFVQT---PQHFSVVQTFQQAVEHYLTSFDHILSRH 307
                     7999********888857666555..8899999***99999*********************99...9999999********************* PP

  GCP_N_terminal  95 Esqlle.dsesiltLlrlevwlqetllllrvLanlveevekanlkggallsllh 147
                     Es++ +  ++ ++++l++   ++e+ + l  L+ ++++ ++++ +    l+ ++
      KKY18360.1 308 ESEYISiTNDRVVSMLSFTDNIKESVDPLLGLLPIISKLNTQGNQTILCLESMF 361
                     ***999444445***************************988887777666665 PP

>> GCP_C_terminal  Gamma tubulin complex component C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.41   2.5e+03      26      55 ..      13      43 ..       3     103 .. 0.47
   2 ?   -1.3   0.0       0.2   1.2e+03     182     209 ..     288     315 ..     279     354 .. 0.70
   3 !   33.6   0.3   4.7e-12   2.8e-08     181     305 ..     375     535 ..     359     539 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.41
  GCP_C_terminal 26 alfdelwkpasselrla.LtslLeeairssn 55
                    +lf++  k  ++ l+++  +  +   ir+ n
      KKY18360.1 13 SLFASFRKTSQDTLKVKrQRDAFVRKIRTHN 43
                    4444444443333332222333333333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.2
  GCP_C_terminal 182 eleeklkkeatdldelieaHeafLdsil 209
                     ++++++++  t++d++++ He+   si+
      KKY18360.1 288 TFQQAVEHYLTSFDHILSRHESEYISIT 315
                     5777776666667888877776544444 PP

  == domain 3  score: 33.6 bits;  conditional E-value: 4.7e-12
  GCP_C_terminal 181 releeklkkeatdldelieaHeafLdsilkkclLrsk.kkllklleeilelileFakvldgly.lsvselt........................ 249
                     ++l+e+l+  a+dld++i+aH+ f+ ++++++lL++  ++l + ++++l+l+++F++v++  +  +    +                        
      KKY18360.1 375 SDLLEALDR-AEDLDSMIKAHNLFVMNLQHRLLLTRAlRPLRDAVTDLLDLCIRFSDVTSASQvSKD---Adfnadavsfvttrtqaptnklmdt 465
                     678899954.556*********************99999******************9888443333...3456999999999999999999999 PP

  GCP_C_terminal 250 ...............aeeaeeeeleekleerleelekeFrkkvslllkvlralkeqeede.dlrqLllrLdf 305
                                    + + +++ l++   +++ ++e++ ++++s+ ++ l++l++ +e++ + + L+ rLd+
      KKY18360.1 466 dssdedeasdvegysTFSMDQDGLSH--VDQIFDVENRMKRQLSFVVSGLQGLARADENPaCWDILAERLDW 535
                     99999999887766522223333333..58888999999999999999999985555333255666667776 PP

>> GCP5-Mod21  gamma-Tubulin ring complex non-core subunit mod21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   2.6   8.8e-07    0.0053       4     209 ..      55     241 ..      52     287 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.8e-07
  GCP5-Mod21   4 qvesvvdkfriqgredlandlddrleeldrvessvknsllhaeiLhllLelSksPsdvavpkepaekdlnkeleeEaliseddenleesdeGdhWdlpe 102
                 +++++ +kf++++ ++la  l++rl el       +      +iL +lL lS++P     + +   ++l ke ++ +    dd    ++ +   W    
  KKY18360.1  55 RLDGLLEKFSVLNNDELAEALHARLVELMG-----RSTKFTPDILDFLLHLSNNPLANSNVVD-L-EQLIKEPKKTKSLTWDDIEEFDPINKKEWI--- 143
                 67899********************88533.....33445679************75443322.2.345555566666666776666777888886... PP

  GCP5-Mod21 103 WsssdddesvtkseEeeevtdeneeinepsnfPhipvieksenfekqdlidlfekeaqkildklleKkdsslnevlriseqsilretiymLiGyqsfif 201
                 W s       t ++ +e++        ++s+  +  v e+   ++       + ++ +  l + +  +  s ++++ i+e   +re i+mL+G ++ +f
  KKY18360.1 144 WRS----IHFTDYSSDEDELATSASTSIASETGN--V-EDDLPADGALETAHVADDLESSLSRAQFWH--SEDNLIEITELQAIREGIFMLLGLPASLF 233
                 555....445555555555555555555555522..2.222223333333445555555566666655..56689999999999999999999999999 PP

  GCP5-Mod21 202 skveevld 209
                  +v++ ++
  KKY18360.1 234 WRVDGFIE 241
                 98887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.52
# Mc/sec: 3103.96
//
Query:       KKY18361.1  [L=544]
Description: putative cytochrome p450 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-52  177.4   0.0    5.4e-52  177.1   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.1   0.0     3e-56   5.4e-52      74     436 ..     122     508 ..      46     526 .. 0.83

  Alignments for each domain:
  == domain 1  score: 177.1 bits;  conditional E-value: 3e-56
                 HHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCS.......EEETHHHHHHHHHHHHHHHHHSSHHHTT CS
        p450  74 llatsrkpfkgkgvlfangekwkklRrfltptltsfgklsleelveeeaedlveklrkkagess.......elditellskaaldvigsilFgarfdll 165
                  l++  kp  g gv++++ge wk  R ++ p++  + + +  +l+e+ +++l ++l+++++  +        ld+++++++ +ldv +++l+g ++ + 
  KKY18361.1 122 RLES-WKPLFGPGVFVSRGESWKHYRALVRPQFARD-QINDLDLIERHVQQLFKALDQQRDRTKekeiwtrDLDLYPYFANLTLDVNTELLYGYSVHSQ 218
                 4444.3577899**********************99.4477888888888888888888888777889***************************9955 PP

                 TSSH............HHHHHHHHHHHHH..HHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHH.HHHHHHCHCHCSCSSCSHHHHHHHHC CS
        p450 166 edek............lselvkaveelss..llskssvqllllfpllkylptkllrklkeavkklkdlldkl.ieerretldsakksrrdfldalllak 249
                 +  +            +++ ++  ++++   +   ++  l+++ +ll   pt+ + ++ eav++++++  +l +++ ++ l+s  ++ +   d ++l  
  KKY18361.1 219 NP-SerfelpylpghaPPDHEHIGHHIHAgkEYIETRGALWKYRWLL---PTREGDRHCEAVQRYANYFVQLrLTQGEKYLSSLPRHLNATQDRFVLLN 313
                 55.55***********7777777777776666678999999999955...9999999999999999998886256666666666444455555566554 PP

                 TTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTT......T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEE CS
        p450 250 kekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkr......eptyddlqklpyldavikEtLRlhpvvplll 342
                  e   + + +  el+ ++l++l+aG d +++ l w++y+L ++P v +klr  i e  g         + + + l++lpyl+a+i+Et R+ pv+p l 
  KKY18361.1 314 -ELARH-TQNPSELRGETLNILLAGRDASAAFLGWIFYFLSRHPAVFSKLRSQILELYGPYTaskpitSQSLRSLAHLPYLTAIINETIRIAPVIP-LN 409
                 .44444.67999**********************************************87667888888888999*********************.99 PP

                 EEESSSCEEETT.........EEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHH CS
        p450 343 pRevtkdvvirg.........ylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLq 431
                 +R++++d++++           +ipkG++v++++yal+++ +++ p+ ++F+peR++++k       f+f+PFG G+R+C+G+++Ar    ++++++ q
  KKY18361.1 410 ERVALNDTTLPRgggpdhqspIFIPKGQQVLIPTYALQQRSDLWgPDVNQFKPERWENRKF-----GFEFIPFGGGVRQCLGQQFARTVAAYVVVRVCQ 503
                 9*********744568899999*************************************75.....79******************************* PP

                 HEEEE CS
        p450 432 nFeve 436
                 +F+v 
  KKY18361.1 504 RFDVF 508
                 **996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.35s 00:00:00.99 Elapsed: 00:00:00.51
# Mc/sec: 3194.33
//
Query:       KKY18362.1  [L=235]
Description: putative snare domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-25   89.4   0.6    8.5e-25   87.2   0.2    2.1  2  Syntaxin-6_N   Syntaxin 6, N-terminal
    0.00022   21.2   1.0        0.1   12.5   0.1    2.5  2  Vip3A_N        Vegetative insecticide protein 3A N terminal
  ------ inclusion threshold ------
      0.034   14.3   1.6      0.094   12.8   1.6    1.7  1  UPF0242        Uncharacterised protein family (UPF0242) N-ter
      0.085   13.1   0.4         32    4.9   0.0    3.4  4  KxDL           Uncharacterized conserved protein
      0.091   13.3   1.4         11    6.5   0.4    3.0  3  PSD4           Protein of unknown function (DUF1592)
       0.12   12.9   0.1        3.8    8.1   0.1    2.7  1  YtxH           YtxH-like protein
       0.22   11.6   1.3        1.8    8.6   0.4    2.5  2  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 
       0.34   11.1   3.9        2.2    8.5   0.1    2.7  3  Cnn_1N         Centrosomin N-terminal motif 1
       0.43   10.9   3.3         65    3.9   0.2    3.6  3  DUF3618        Protein of unknown function (DUF3618)
        0.5    9.9   6.2       0.11   12.1   0.3    2.1  2  DUF4795        Domain of unknown function (DUF4795)
        1.2    9.3  12.1        3.5    7.8   0.2    3.4  3  TolA_bind_tri  TolA binding protein trimerisation
        1.7    9.2   8.2         19    5.8   0.1    3.6  4  NPV_P10        Nucleopolyhedrovirus P10 protein


Domain annotation for each model (and alignments):
>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.2   5.7e-28   8.5e-25       1      99 []       4     102 ..       4     102 .. 0.99
   2 ?    0.0   0.0      0.86   1.3e+03      62      72 ..     167     177 ..     134     227 .. 0.57

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 5.7e-28
  Syntaxin-6_N   1 DPFfevkeeVqkslnkaeslyrrwerlledtssstseeldetrteLrkalrsiewdledLeetvriveknpskfkidekelsrrrafveevreevke 97 
                   DPF+e++++  ++++ ++sl++++ r++++++s+ts+el + r+eL+++l+++++dl+dL e+vr+ve++p++f++d +e+srrr +v+++  e+++
    KKY18362.1   4 DPFLEAQADALNAIQHTRSLFSSYLRIRSLAKSPTSPELVQSRSELQNTLEDLSNDLQDLIESVRAVENDPYRFGLDIDEVSRRRTLVNDISGEIES 100
                   9********************************99*************************************************************9 PP

  Syntaxin-6_N  98 mk 99 
                   m+
    KKY18362.1 101 MR 102
                   96 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.86
  Syntaxin-6_N  62 etvriveknps 72 
                   +tv+ ++++ s
    KKY18362.1 167 RTVGNLRAQAS 177
                   22222222222 PP

>> Vip3A_N  Vegetative insecticide protein 3A N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   6.9e-05       0.1      35      66 ..      79     110 ..      51     116 .. 0.88
   2 !    6.9   0.1    0.0037       5.5      41     109 ..     149     210 ..     129     220 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.9e-05
     Vip3A_N  35 ltldeilknqqllndisgkldgvngslndlia 66 
                 l +de+ + + l+ndisg ++ + g+l+d + 
  KKY18362.1  79 LDIDEVSRRRTLVNDISGEIESMRGELQDTVQ 110
                 789*************************9875 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0037
     Vip3A_N  41 lknqqllndisgkldgvngslndliaqgnlntelskeilkianeqnqvlndvnnkldaintmlrvylpk 109
                  ++q+++ +  ++ldgv  ++++l aq    +++ +e+    +eq  +l+dv++  d +   l+  + k
  KKY18362.1 149 QQQQEIMHEQDEQLDGVFRTVGNLRAQA---SDMGREL----EEQAVMLDDVDTLADRVGGKLQNGMKK 210
                 567889999**********999999996...4555554....677777777777777666666555555 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.6   6.3e-05     0.094      80     186 ..      42     183 ..      15     190 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.3e-05
     UPF0242  80 ldeglktkeealeelqeeeeeLkee.................ldakeeelerlkeenqqLqekleaiae..................dfeelkleleeq 143
                 l ++ ++ +++le+l ++ ++L e                  ++ + ++++    e ++++ +l+++++                  df+++  +  ++
  KKY18362.1  42 LVQSRSELQNTLEDLSNDLQDLIESvravendpyrfgldideVSRRRTLVNDISGEIESMRGELQDTVQhavdrdgkrgssnlpnpaDFDNVHGADMDE 140
                 334556778899999999999999899999999999999999999**********************999*******************9999888888 PP

     UPF0242 144 LaekqellqeyqetieeqrsvlekrqdqieqLeskVrDlnyEi 186
                  ++ +  +q+ qe ++eq + l+     +++L ++ +D+  E+
  KKY18362.1 141 DEYAEFEHQQQQEIMHEQDEQLDGVFRTVGNLRAQASDMGREL 183
                 89************************************98887 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       4.2   6.3e+03      15      29 ..       7      21 ..       5      30 .. 0.75
   2 ?    4.9   0.0     0.022        32      28      63 ..      38      73 ..      31      74 .. 0.88
   3 ?   -1.3   0.0       1.8   2.8e+03      20      39 ..      93     112 ..      80     115 .. 0.70
   4 ?    3.9   0.0     0.043        64      50      79 ..     148     177 ..     140     179 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.2
        KxDL 15 lalQaqtsgrlnkkn 29
                l +Qa+ ++ ++++ 
  KKY18362.1  7 LEAQADALNAIQHTR 21
                567888888888775 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.022
        KxDL 28 knreLlelnalsqerlaklrarfkqgtkllkevkkd 63
                ++ eL + + ++q+ l++l++++++ ++ ++ v +d
  KKY18362.1 38 TSPELVQSRSELQNTLEDLSNDLQDLIESVRAVEND 73
                677999999999999**9999999999999888776 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.8
        KxDL  20 qtsgrlnkknreLlelnals 39 
                 ++sg++++   eL++  + +
  KKY18362.1  93 DISGEIESMRGELQDTVQHA 112
                 56777777777777766655 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.043
        KxDL  50 fkqgtkllkevkkdLesifkkirslkakla 79 
                  +q+++ ++e  ++L+ +f+++ +l+a+++
  KKY18362.1 148 HQQQQEIMHEQDEQLDGVFRTVGNLRAQAS 177
                 46788999999***************9987 PP

>> PSD4  Protein of unknown function (DUF1592)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.13   1.9e+02      53      99 ..      18      66 ..       7      76 .. 0.69
   2 ?    1.3   0.0      0.31   4.7e+02      69     105 ..      82     117 ..      78     126 .. 0.77
   3 ?    6.5   0.4    0.0075        11      65     106 ..     130     171 ..     124     179 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.13
        PSD4 53 alveeFarqwlelerletvekdkelfpef..dealreamreetelfvee 99
                ++ ++ ++++l++++l++ + ++el++     +++ e++ ++++ ++e+
  KKY18362.1 18 QHTRSLFSSYLRIRSLAKSPTSPELVQSRseLQNTLEDLSNDLQDLIES 66
                5667789999999999999999988874412234445566666666665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.31
        PSD4  69 etvekdkelfpefdealreamreetelfveevleedk 105
                 ++v++ ++l+++++ ++ e+mr e++ +v++++++d+
  KKY18362.1  82 DEVSRRRTLVNDISGEI-ESMRGELQDTVQHAVDRDG 117
                 55666777777775555.57***********888876 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0075
        PSD4  65 lerletvekdkelfpefdealreamreetelfveevleedks 106
                 +++++ +  d++++ ef+++ ++++++e ++ ++ v++  ++
  KKY18362.1 130 FDNVHGADMDEDEYAEFEHQQQQEIMHEQDEQLDGVFRTVGN 171
                 677888899***********************9999987655 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0025       3.8      27      53 ..      46      95 ..      44     213 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0025
        YtxH 27 Rkdlkekaddlkekakelleeakeka.......................k 53
                R +l+++++dl++++++l+e+++                          +
  KKY18362.1 46 RSELQNTLEDLSNDLQDLIESVRAVEndpyrfgldidevsrrrtlvndiS 95
                88899999999999999999996655777777777777555533333331 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.4    0.0012       1.8      35      64 ..      41      80 ..      28     115 .. 0.64
   2 ?    0.8   0.0      0.31   4.6e+02      54      87 ..     172     204 ..     148     216 .. 0.46

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0012
  Baculo_PEP_C 35 qlatlldaietqLnalsedlksllaeldt..........r 64
                  +l +   +++++L++ls+dl++l++++++          +
    KKY18362.1 41 ELVQSRSELQNTLEDLSNDLQDLIESVRAvendpyrfglD 80
                  5777888899999999999999999998766677755552 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.31
  Baculo_PEP_C  54 lksllaeldtrldtlltnLtdalnalqdtlrneL 87 
                   l++  +++ ++l++++  L+d + +l+d +  +L
    KKY18362.1 172 LRAQASDMGRELEEQAVMLDD-VDTLADRVGGKL 204
                   222233333355554444433.455555444444 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1    0.0015       2.2      37      71 ..      38      72 ..      12      73 .. 0.86
   2 ?   -2.3   0.0       3.3     5e+03      51      61 ..      97     107 ..      86     113 .. 0.69
   3 ?    2.8   0.5     0.089   1.3e+02      29      68 ..     151     192 ..     145     195 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0015
      Cnn_1N 37 qkeellkenielkveveslqkelkekkkllreaek 71
                ++ el++++ el+ ++e+l ++l+ + +++r  e+
  KKY18362.1 38 TSPELVQSRSELQNTLEDLSNDLQDLIESVRAVEN 72
                5779999*******************999998775 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.3
      Cnn_1N  51 eveslqkelke 61 
                 e+es++ el+ 
  KKY18362.1  97 EIESMRGELQD 107
                 66677766664 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.089
      Cnn_1N  29 rleklse..eqkeellkenielkveveslqkelkekkkllre 68 
                 ++e ++e  eq + + ++  +l+ +  ++ +el+e   +l++
  KKY18362.1 151 QQEIMHEqdEQLDGVFRTVGNLRAQASDMGRELEEQAVMLDD 192
                 444444455889999999999************999888877 PP

>> DUF3618  Protein of unknown function (DUF3618)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.2     0.043        65      13      26 ..      44      57 ..      41      61 .. 0.87
   2 ?    3.3   0.0     0.065        98       8      27 ..      95     114 ..      91     115 .. 0.80
   3 ?    2.0   0.1      0.17   2.5e+02      18      29 ..     189     200 ..     177     206 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.043
     DUF3618 13 rtRaeLaeTvdeLa 26
                + R+eL +T++ L+
  KKY18362.1 44 QSRSELQNTLEDLS 57
                89**********97 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.065
     DUF3618   8 erdIertRaeLaeTvdeLaa 27 
                   +Ie  R eL  Tv+   +
  KKY18362.1  95 SGEIESMRGELQDTVQHAVD 114
                 559***********986655 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.17
     DUF3618  18 LaeTvdeLaara 29 
                 +  +vd La+r+
  KKY18362.1 189 MLDDVDTLADRV 200
                 556788888886 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   7.2e-05      0.11      80     143 ..      43     110 ..      34     122 .. 0.82
   2 ?    0.4   1.1      0.28   4.1e+02      98     129 ..     152     188 ..     123     226 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.2e-05
     DUF4795  80 kvsrdqfDeakkeLekmleellekleeqeealkkaldtLqeelkekld.....rlelepLkeqleerlk 143
                 ++sr+++++++++L++ l++l+e++ ++e++  ++  ++  e+  +         e+e+++ +l+++++
  KKY18362.1  43 VQSRSELQNTLEDLSNDLQDLIESVRAVENDPYRFGLDID-EVSRRRTlvndiSGEIESMRGELQDTVQ 110
                 789****************************999988888.6666644445577788888888877765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.28
     DUF4795  98 eellekleeqeealkkaldtLq......eelkekld..rl 129
                 +e+   ++eq+e+l+ +  t+       ++++  l+  ++
  KKY18362.1 152 QEI---MHEQDEQLDGVFRTVGnlraqaSDMGRELEeqAV 188
                 333...3333333333333333333666555555543322 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0023       3.5      18      37 ..      44      63 ..       7      69 .. 0.76
   2 ?    3.4   0.1     0.055        82      27      44 ..      91     108 ..      88     119 .. 0.79
   3 ?    2.8   3.3     0.086   1.3e+02       7      50 ..     144     185 ..     140     207 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0023
  TolA_bind_tri 18 qlllelqqqlealqqelreL 37
                   q+  elq+ le+l+++l++L
     KKY18362.1 44 QSRSELQNTLEDLSNDLQDL 63
                   88999***********9988 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.055
  TolA_bind_tri  27 lealqqelreLRGqiEel 44 
                    +++ + e+ ++RG++++ 
     KKY18362.1  91 VNDISGEIESMRGELQDT 108
                    578889999****99864 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.086
  TolA_bind_tri   7 arLErilearsqlllelqqqlealqqelreLRGqiEelqyqleq 50 
                    a+ E++ ++  + ++e+ +ql+   + +  LR q  ++  +le+
     KKY18362.1 144 AEFEHQQQQ--EIMHEQDEQLDGVFRTVGNLRAQASDMGRELEE 185
                    566777777..9*********************99988888875 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.52   7.7e+02      44      58 ..       7      21 ..       4      44 .. 0.73
   2 ?    5.1   0.5     0.021        32      38      62 ..      47      71 ..      39      73 .. 0.81
   3 ?   -1.1   0.0       1.8   2.7e+03      20      36 ..      91     107 ..      79     115 .. 0.48
   4 ?    5.8   0.1     0.012        19      15      58 ..     157     197 ..     150     214 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.52
     NPV_P10 44 LdaqsaqLaeletkv 58
                L+aq+++L++++ + 
  KKY18362.1  7 LEAQADALNAIQHTR 21
                899******999864 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.021
     NPV_P10 38 telnekLdaqsaqLaeletkvenIq 62
                +el++ L+++s+ L++l ++v +++
  KKY18362.1 47 SELQNTLEDLSNDLQDLIESVRAVE 71
                6899999999999999999888765 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.8
     NPV_P10  20 Vdalqqqvddvqenlpd 36 
                 V+ ++ ++++++ +l+d
  KKY18362.1  91 VNDISGEIESMRGELQD 107
                 44444455555555544 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.012
     NPV_P10  15 avddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkv 58 
                 + d+++d +   v +++++  d   +  +L++q+  L++++t  
  KKY18362.1 157 EQDEQLDGVFRTVGNLRAQASD---MGRELEEQAVMLDDVDTLA 197
                 668999999999******9999...779***********99944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1047  (0.058397); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1789.42
//
Query:       KKY18363.1  [L=361]
Description: putative mitochondrial 54s ribosomal protein img1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00064   19.6   0.0     0.0013   18.6   0.0    1.5  1  Ribosomal_L19  Ribosomal protein L19
  ------ inclusion threshold ------
      0.036   13.8   4.6      0.056   13.2   4.6    1.2  1  DUF4201        Domain of unknown function (DUF4201)


Domain annotation for each model (and alignments):
>> Ribosomal_L19  Ribosomal protein L19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.5e-07    0.0013      41      87 ..      95     141 ..      79     143 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.5e-07
  Ribosomal_L19  41 feGvviarkgkgisetftvRkisegvgvervfplhspkiekievvrr 87 
                     +Gv+++ k +  +++++vR     vg e  ++++sp++++++++++
     KKY18363.1  95 LSGVILSIKSRRQDTSVLVRSNLTKVGTEMSIKVFSPNVANVTLLKH 141
                    57****************************************99886 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   4.6   6.3e-06     0.056      46     125 ..     278     354 ..     275     358 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.3e-06
     DUF4201  46 qlqienqalnkkIeernkeLkrlkkkttktvhalthlkeklhmleselselkkelkekeerlaklrkelykvklerdklr 125
                  lq++ +++ ++Iee +keL +lk k  ++v+  +h++ kl+m  +  +e+  ++  ++ + ++lrkel++ k+e++ l 
  KKY18363.1 278 DLQRNHESFIETIEEQKKEL-ELKGKELTDVK--SHYHAKLSMWYQDDQEKDGKIGGLKYEVTRLRKELERSKAEKTSLN 354
                 5899999************9.58888888876..8****************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2615.96
//
Query:       KKY18364.1  [L=442]
Description: hypothetical protein UCRPC4_g04981 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 3094.36
//
Query:       KKY18365.1  [L=565]
Description: hypothetical protein UCRPC4_g04982 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.9e-17   60.6   0.1    1.6e-16   60.0   0.1    1.2  1  AMP-binding  AMP-binding enzyme


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.1   8.7e-21   1.6e-16      46     376 ..     162     545 ..     147     546 .. 0.70

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 8.7e-21
                  TT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE..E.TCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHC CS
  AMP-binding  46 kgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli..a.tvdselleklleaaakleavklvivldadellkeeelkee 140
                  +g++Vai+l ns e++++++a++ +G  +v +  +lt eel   l+ ++a vli  a tv+  l+ k++++      v +v  + +  ++ +e  ++ 
   KKY18365.1 162 NGSVVAIYLSNSTELIASIFAAAFYGFKAVLIPYKLTTEELIKHLSLVKADVLIaeAgTVELGLVTKSCPEL---SNVIWVAKYGSRHMDWNEVPEGV 256
                  799***************************************************542333333333333322...23333333333333333222222 PP

                  CCCSCTTS....................-TSCCCS-BTTSEE..EEEEE--SSSS-EEEEEEHHHHHHHHHHHH..HHHCSCCTTT-EEEESS-TTSC CS
  AMP-binding 141 eeseekae....................kpeeeeelkpddla..yiiYTSGTTGkPKGVmlshrnlvanvaslk..letrfklkeddvvlsilplahi 214
                   +     +                        + + ++d+++  +++++ G TG+ K + ++ +n+va++a++   +++ ++ + +d+vl   +l  +
   KKY18365.1 257 GS-----KldvcvwhelfdekkgivsseL---P-PFEKDSTVqpLVLFSEG-TGNLKLIEYTSENIVAATAAQLsaIPRAQRYSLKDTVLPADSLTSV 344
                  22.....1335556778888889986431...2.23333333225666666.7*************9998775475554466777************* PP

                  HHHHHHHHHHHHTT-EEEE-TTCGC.CHHHHHHHHHHHHT-SEEEEEHHHHHHH........HHCCCHHCHHHHC....................... CS
  AMP-binding 215 fglilelllallsGatvvllpkdaa.ldpklllelieklkvtviagvPrvleal........lesgalkaakkak....................... 280
                  + l + +++al+sG+t+ l +   +  d   +  + +  ++t+i ++   l +                     +                       
   KKY18365.1 345 YPL-TTTFAALYSGSTIALNSVAGDaVD---IRSAATGVSPTIIITPSDSLSQYhsrttsksK-----------Tifeklnhtlqsqcldsgtmpkpt 427
                  **8.***************776666444...66788889999999999999988544322210...........122223455666777777788888 PP

                  ...............CGTT-SEEE......EESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEE.....CHCTTTCTSTTS-BEE-TTEEEEEE- CS
  AMP-binding 281 ...............dlsslrlvl......lggeplspellrffralfgeevlegYGlTEttgvvtv.....lpleedkkklgsvGkplpgvevkivD 352
                                 ++s lrl++      +   p+s++ l  +r ++g ++  +Y lT   ++ +v     + + ++ k + + G+pl  ve+k++ 
   KKY18365.1 428 tiskaitggtaaiepSFSNLRLIIssyeagSSNPPISSQSLANLRIITGARI--IYALTAPHVAGAVtqtniF-DYRRSKGPAHLGTPLSSVELKLIG 522
                  8888888888888888888999986666555778899999999999998854..6777755555533345653.35555678899************9 PP

                  TTTSCBEETTSE.EEEEEEETTS-S CS
  AMP-binding 353 eetgepvpdgee.Gellvrgpgvmk 376
                  +e +  + dg++ G++lv+gp v  
   KKY18365.1 523 DE-KDMC-DGNPvGKVLVSGPAVVG 545
                  98.6777.66666********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.54
# Mc/sec: 3155.85
//
Query:       KKY18366.1  [L=361]
Description: putative fructosyl amine:oxygen oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-23   84.5   0.0    1.3e-23   84.2   0.0    1.0  1  DAO       FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   0.0   7.1e-28   1.3e-23      81     349 ..      10     302 ..       6     305 .. 0.73

  Alignments for each domain:
  == domain 1  score: 84.2 bits;  conditional E-value: 7.1e-28
                 EEEEEEEEEESSHHHHHHHHHHHHHHHHTTTTEEE.EEH.HHHHHHSTT..ST....TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEC... CS
         DAO  81 yrrtGllslaadeeelealdkllallleagldael.lda.eevrelepa..lp....gllgalfypdtgqvdpakltaalaraaealGveilegte... 168
                 y++ G+++ a+++   +al +l ++ l+ +  +++ l+  e  r+  p   l     g++g++  +++g+v+++k++ +  ++ae+lGv++++g++   
  KKY18366.1  10 YHPHGYVVAASSP---DALNRLEHEELPEDKSEYIpLETaEDFRKTMPKgvLTgefpGWKGWWKKTGAGWVHARKALVSASKEAERLGVKFITGSPqgn 105
                 7889999999765...55555556666666544444666588999999776226777****9999999**************************66444 PP

                 EEEE..EEEE....TCEEEEEEECT.EEEEEEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETT CS
         DAO 169 vtgl..eeed....gkvwgverttp.gendaadavVnaaGawsdllgllkeldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkd 260
                 vt+l  +  +    g v g   tt+ g ++ a+  +++aGa +  l    +++ +++p+  +  ++ + + ++v+ ++ lpv+   + ++g+++ p++d
  KKY18366.1 106 VTSLiyS--EghqnGEVLGA--TTEdGKEHLATRTILCAGATAPRL---LDVKNQLRPTAWTLAHI-KMTAEEVKLYKDLPVL--FNIEKGFFMEPDED 194
                 8886332..22223555555..888898864488********9855...34444556666666666.4444555556666665..455799*****965 PP

                 S.EEEEEESSE...............EETTCSSTSCSHHHHHHHHHHHHHHSGGGCG....EEE.EEEEEEEETTSSEEEEEEETEEEEEEEEECTTTH CS
         DAO 261 g.rvlvGgtad...............eesgdddpevdeedidellealrklfPqlgd....vlr.kwaGlrplpdglpligetpgvkglylatGhsghG 338
                   +++++ ++                +   +   +++ e+ ++ +  lr+++P l+d    + r +w+  +  pd+++lig++p +kgl+l  G sghG
  KKY18366.1 195 KhELKMCDEHPgycnwlpdpdspsgkTSVPFAKHQIPIEAEERARGFLRDIMPHLADrpftFARiCWCADT--PDRNFLIGPHPDHKGLVLGIGDSGHG 291
                 526889987779***9999887666644455558999999999***********86656443345787555..5********99*************** PP

                 HHHHHHHHHHH CS
         DAO 339 ltlapatGkll 349
                 +++ + +G  +
  KKY18366.1 292 YKHITSIGGFI 302
                 ***99998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 2340.61
//
Query:       KKY18367.1  [L=224]
Description: putative microsomal signal peptidase subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-31  109.0   0.8    7.3e-21   74.4   0.2    2.1  2  SPC22     Signal peptidase subunit


Domain annotation for each model (and alignments):
>> SPC22  Signal peptidase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.2   4.1e-25   7.3e-21      53     128 ..      10      90 ..       2     103 .. 0.83
   2 !   33.3   0.0   1.7e-12   3.1e-08     116     160 ..     122     167 ..     114     172 .. 0.92

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 4.1e-25
       SPC22  53 ygsnrkkkdraklkfdldaDlsslfnWNtKqlFvyltaeYetkkn.......evNqvvlWDkIirskedaklklknvkskYsl 128
                 y  ++kk+++a++kfdl+aD+sslfnWNtKqlFvy+ a+Y+ +++       e+N+ ++WD+Ii  +    +  +n+k +Y  
  KKY18367.1  10 YY-SQKKEEYAQIKFDLSADFSSLFNWNTKQLFVYVLATYPPTNRagdvvgsELNEAIVWDTIIPAPV-TTWAWSNIKDRYFS 90 
                 33.599**********************************99888899998889**********9984.46777777777765 PP

  == domain 2  score: 33.3 bits;  conditional E-value: 1.7e-12
       SPC22 116 klklknvkskYslkdqeksLrgrk.vtltLhwnvmPvvGlltyget 160
                 +l lkn+k kY++ d + +L+ ++ +tlt+ wn++P+vG l+++++
  KKY18367.1 122 VLALKNQKPKYQITDPSGQLAMKQnATLTVGWNIQPWVGALVWDKG 167
                 5889****************99988*****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.33s 00:00:00.83 Elapsed: 00:00:00.50
# Mc/sec: 1350.64
//
Query:       KKY18368.1  [L=1117]
Description: putative proteins containing regions of low-complexity [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
          0 1053.9   0.0          0 1053.7   0.0    1.0  1  Hid1           High-temperature-induced dauer-formation prote
   3.8e-101  339.4   0.0   4.9e-101  339.1   0.0    1.1  1  Dymeclin       Dyggve-Melchior-Clausen syndrome protein
      1e-12   48.2   0.2    1.5e-12   47.6   0.2    1.3  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    8.1e-10   38.5   0.1    1.5e-09   37.6   0.1    1.5  1  adh_short      short chain dehydrogenase
     0.0021   17.5   0.0     0.0039   16.7   0.0    1.4  1  Epimerase      NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.057   12.5   0.0       0.13   11.4   0.0    1.5  1  RmlD_sub_bind  RmlD substrate binding domain
      0.066   12.8   0.1       0.12   11.9   0.1    1.4  1  NmrA           NmrA-like family
      0.097   12.0   0.0       0.19   11.1   0.0    1.4  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
       0.12   12.4   0.0       0.32   11.0   0.0    1.7  1  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
       0.19   11.7   0.1         33    4.5   0.0    2.8  3  DUF4180        Domain of unknown function (DUF4180)


Domain annotation for each model (and alignments):
>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1053.7   0.0         0         0       1     812 []       1     837 [.       1     837 [. 0.97

  Alignments for each domain:
  == domain 1  score: 1053.7 bits;  conditional E-value: 0
        Hid1   1 MgasesklafkkaifrLgekrliaeddayweefWelpesteDvFeLltpadirkvRdenleNletLilavierlvelakhpsfpdpeqapeseaLnCvR 99 
                 Mgaseskl+fk++ifrL+e++ i+++d+yw+ fWelpes+eDvF+L++p dir++Rdenl+NletLilav++rl++l++hpsfpdp+ ap+++ LnC+R
  KKY18368.1   1 MGASESKLVFKQGIFRLSEDKDIPANDPYWTGFWELPESVEDVFSLFSPLDIRRTRDENLSNLETLILAVTSRLNVLKNHPSFPDPDLAPDRDCLNCIR 99 
                 *************************************************************************************************** PP

        Hid1 100 lLtrllPfifEeesleewedklfWssrkkpkrkaqvasevledesssee.......eeeeekekplaeelldalvdlLFlkdFTvpapksskskveysi 191
                 +Ltr+lP+i+E+e+l++we+++fW  r++++rkaq+a+evl+de+++++       e+ +e+ kplaeel+d+l+dlLF+++FT+p++ ++kskv+y+i
  KKY18368.1 100 VLTRILPYIYEAENLADWEERFFWGVRRRKTRKAQIATEVLFDEAQETTldvpntnEDVYEEVKPLAEELIDTLTDLLFFTGFTIPQLTTAKSKVSYAI 198
                 ***********************************************99*****98778999************************************* PP

        Hid1 192 WesGvgtatklpsnkeiesnRtEvLklLLtlfsetlYrspsevssngskvltylvssdnrqevltLlcSLlntvcrydpsgsglpynsvvlkdsrellV 290
                 W+sGvg+++++ + ke+e nR+E+L+lLLt++s+++Y+++s ++++g++++ty++++ ++q+vl++lcSLlnt+++y+p+ +++py++vv+kd+r+ lV
  KKY18368.1 199 WQSGVGCKQSIGTSKELETNRCEILRLLLTMTSKAMYMPSSLLPVQGVRAITYIATCPDKQIVLSMLCSLLNTTMKYNPAAWRVPYDHVVWKDPRQGLV 297
                 ****************************************99********************************************************* PP

        Hid1 291 eyclqlLlvlldypipedeklseevktertsskpkNlfriylgrlhreqdfqFlldgltriLnqplq..ssylpnsqksvkfaqelliLlwellqcNkr 387
                  y+lq+Llvll+ypipe++++          ++pkN++r+++grlhr++dfqF+++g+triLnqp+q  ssylp+sqksvk+a+e+++L+we+lqcNkr
  KKY18368.1 298 IYSLQFLLVLLLYPIPEEGHG----------PPPKNFYRHFFGRLHRPEDFQFIAEGMTRILNQPMQatSSYLPGSQKSVKWAPEMIMLFWEALQCNKR 386
                 *********************..........9******************************************************************* PP

        Hid1 388 FrsfviessrvldllvlilyylveyrsdqskkglvkicvfillllSseknfgkrLnkpfeaqeslptsiripvftgtyaDfliisihkllttgkeklss 486
                 Frsf+i+s+r++d+++l+l+y++ey++d+sk+g+v++cvf+l+++S+e nfg +Ln+ feaqe+lp s+ri++f+gtyaDfliisih+l+t++k+kl++
  KKY18368.1 387 FRSFIIDSNRSHDFVILCLFYAIEYKTDPSKQGVVRMCVFVLQTMSVEANFGRSLNNRFEAQETLPASVRINNFRGTYADFLIISIHTLITASKGKLDA 485
                 *************************************************************************************************** PP

        Hid1 487 lvdtLleiLvnispylktLsleacskllqLlesfSspsfLlanesNhkllalllealnnviqkqfkgnrnLvYsilrkrkvfealrnltlesaseeier 585
                 ++++Ll+i++ni++y ++Ls +++skllqL++s+S psfLlane+Nh+ll++lle++n++i++++++n++++Y+il++rk +ealr++tles++ee er
  KKY18368.1 486 IYPALLAIINNIAAYTEHLSATSSSKLLQLFSSMSAPSFLLANETNHTLLQSLLESMNAIIEHRYSKNPMFIYAILKSRKKLEALRTFTLESGQEELER 584
                 *************************************************************************************************** PP

        Hid1 586 snesarldsideeeeenssessrieesrsesrspslsevpelksslaitddeskaer.eksatessssqavs.................qlremsekar 666
                  ++     + +e  ++n+ ++++++ +r+ sr+psls+vpe +s++ i+dd++++e+ + ++t+++ss++                   qlr+msekar
  KKY18368.1 585 MAR-----RRKELASSNEPSPNHTDANRTASRTPSLSSVPEQESAFTIGDDDDSDEDnDVQDTPAQSSPSLAdsrapsisssiddsvpvQLRGMSEKAR 678
                 999.....5566666777778888888999*******************9998888735677788887766689************************* PP

        Hid1 667 akesaesteesrqesatskkspsgmsqsaeekftptsewlesWksklpLetiltllkallpkiekiaseegltdeseiL.........kflkdktlvgl 756
                 +k++ +++++srq+s+ts  ++   s ++++ f+pt++w+e+W ++lpL+t lt++ al p++++ + +++  + s +           f +++ +++l
  KKY18368.1 679 GKMPVGQHSFSRQNSSTSLGGYFLHSMTSNSGFIPTPHWIETWLPELPLHTCLTVIRALEPHLPSNSATNTT-AASDTSnrqflhdlpAFESEPSIAML 776
                 ***************************************************************998877554.333322233459************** PP

        Hid1 757 lpepspikirkfewsalslgWyesllwgviynreenvkk.....ltavgvwndtevkLfki 812
                 l++pspi+++ fews+lslgWyesllwg i+++e++v++      +avgvwn+t++kLf++
  KKY18368.1 777 LADPSPIRVHLFEWSPLSLGWYESLLWGLIFAAEMVVGAasggtSGAVGVWNGTSIKLFQV 837
                 **************************************99***9***************86 PP

>> Dymeclin  Dyggve-Melchior-Clausen syndrome protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.1   0.0  2.8e-104  4.9e-101       1     580 [.       1     749 [.       1     771 [. 0.91

  Alignments for each domain:
  == domain 1  score: 339.1 bits;  conditional E-value: 2.8e-104
    Dymeclin   1 MGassSklafrkavlqllsktqpidaddafWdqllsfslktptsvqdvfalvepaaeilalrnespgnLatLlrkaveklvelke....scssakeqqt 95 
                 MGas+Skl f k+ + +ls+++ i+a+d++W  +++     p sv+dvf l  +  +i+  r+e+ +nL+tL+  ++++l+ lk+    + +       
  KKY18368.1   1 MGASESKLVF-KQGIFRLSEDKDIPANDPYWTGFWE----LPESVEDVFSL-FSPLDIRRTRDENLSNLETLILAVTSRLNVLKNhpsfPDPDLAP--- 90 
                 *********9.56699999999*************6....8899*******.77899****************************77442222222... PP

    Dymeclin  96 alsqalNalrllrrilkyl................lerasee..........................eedeeeseeaeplaeslllalvdllfcpdft 152
                   +  lN++r+l+ril+y+                +     +                          +++e   ee +plae+l+++l dllf+ +ft
  KKY18368.1  91 -DRDCLNCIRVLTRILPYIyeaenladweerffwgV-----RrrktrkaqiatevlfdeaqettldvpNTNEDVYEEVKPLAEELIDTLTDLLFFTGFT 183
                 .2459**************66666666666666553.....04445578888888999999999999987888999999******************** PP

    Dymeclin 153 vps..k......................sdstyalrtellklLlvllseqlysppssadssafnklldgktsaenrialplvtsLLntviaydpvdesd 227
                 +p+  +                      s++++ +r+e+l+lLl++ s+++y+p+s    + ++ ++ ++t  +++i+l++++sLLnt ++y+p+    
  KKY18368.1 184 IPQltTakskvsyaiwqsgvgckqsigtSKELETNRCEILRLLLTMTSKAMYMPSSLLPVQGVRAITYIATCPDKQIVLSMLCSLLNTTMKYNPA---- 278
                 **986156899*****************889***********************88888887899999***************************.... PP

    Dymeclin 228 agsgvpynhllfsdaaasleplveqslqlLlvlldhdktekavaeesestaeesNlfrnyLsrihreeesdadfkfilkglfrllnntvpseqtylpns 326
                   ++vpy h++ +d +   + lv  slq+Llvll ++ +e+            +N +r++  r+hr+e    df+fi +g++r+ln+ ++  ++ylp+s
  KKY18368.1 279 -AWRVPYDHVVWKDPR---QGLVIYSLQFLLVLLLYPIPEEGHG------PPPKNFYRHFFGRLHRPE----DFQFIAEGMTRILNQPMQATSSYLPGS 363
                 .***************...*****************99999843......3345**************....*************************** PP

    Dymeclin 327 ..kiqfhqelllllykLlhsNkkfleyvlkrsdvldllvPiLellydaradqsrvgliyillfiLLlLSgdrnfgvrlnkliiksvpy..servpmdis 421
                   +++ + e+++l++  l+ Nk+f+++++ ++   d+++  L++  + + d+s+ g + +++f+L  +S + nfg++ln+       +  +e++p ++ 
  KKY18368.1 364 qkSVKWAPEMIMLFWEALQCNKRFRSFIIDSNRSHDFVILCLFYAIEYKTDPSKQGVVRMCVFVLQTMSVEANFGRSLNNR------FeaQETLPASVR 456
                 ********************************************************************************9......644888887766 PP

    Dymeclin 422 ..vftgtlgdLlilvlhrlitynhqrlqDkpLhtcllaiLaNvSpylknLsmvasqkLvsLlellskkwfllsaeakasddlaqelsvneelvrlllei 518
                    f+gt++d+li+ +h lit    +l    ++  llai+ N+++y ++Ls  +s kL++L+  +s + fll++e+            n+ l+  lle 
  KKY18368.1 457 inNFRGTYADFLIISIHTLITASKGKLD--AIYPALLAIINNIAAYTEHLSATSSSKLLQLFSSMSAPSFLLANET------------NHTLLQSLLES 541
                 55788***********************..**********************************************............*********** PP

    Dymeclin 519 lnsiLqyqldgNsnLVYallrkrevfaalanlptdfad............................................................. 556
                 +n i+ + +++N+ ++Ya+l+ r+ ++al++ + +  +                                                             
  KKY18368.1 542 MNAIIEHRYSKNPMFIYAILKSRKKLEALRTFTLESGQeelermarrrkelassnepspnhtdanrtasrtpslssvpeqesaftigddddsdedndvq 640
                 ***********************9999999998766558999999999999999999999999999999999999999999999999999999999999 PP

    Dymeclin 557 .....................................................................................plqnimrvlqvlvp 570
                                                                                                      pl + ++v++ l+p
  KKY18368.1 641 dtpaqsspsladsrapsisssiddsvpvqlrgmsekargkmpvgqhsfsrqnsstslggyflhsmtsnsgfiptphwietwlpelPLHTCLTVIRALEP 739
                 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

    Dymeclin 571 qvekicadkg 580
                  + +  a+++
  KKY18368.1 740 HLPSNSATNT 749
                 9988877766 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.2   8.5e-16   1.5e-12       1     221 [.     881    1102 ..     881    1115 .. 0.86

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 8.5e-16
                    TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG..CSS-G.GGH- CS
  adh_short_C2    1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapk..lkgpf.lets 91  
                    Ga   IG+++A+a+a++G++v+++ ++ +++++++        +v +  D +d+e+v  ++++v++++g   ++v na+ a+    k+p+ l++s
    KKY18368.1  881 GAGPNIGHHVARAFAAKGYKVAIASRRLNEEDSTA-------DQVkISSDLSDPESVVGVFSRVKASLGLPSVVVYNAAAATLndAKNPLsLSLS 968 
                    66678*******************99988843333.......345599******************************9999988444441668* PP

                    HHHHHHHHHHHTHHHHHHHHHHHH...HCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGG CS
  adh_short_C2   92 reefdraldvnlyslfllakaalp...lmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasg 181 
                     ++f r +++n+ s+f  a++a+     + e+     + +  +  + +++     g+ K a  ++++++A+ + ++g +       p +Tl ++ 
    KKY18368.1  969 LKDFTRDFNINTASAFVAAQQAVLgfeQLPESasKTFIYTGNITNTTTIAPLLDSGVGKSATAHIIQSAAKAYTDRGFKYVFLTLNPSATLVTQ- 1062
                    ********************999866655555567799999999999999999************************************98865. PP

                    STTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT CS
  adh_short_C2  182 ikgfdelleelearaplgrlgtpeevaeaalfLasdeasy 221 
                    i +f    e+ ++ +p   +++ e  +e+++ La  e+++
    KKY18368.1 1063 IYRFYYADERKADGSPAYSAVDGEAHGEMYVQLAEGESQG 1102
                    6679999999************************999886 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.1   8.6e-13   1.5e-09       2     120 ..     876     991 ..     875    1047 .. 0.93

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 8.6e-13
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.....S--SSGGG CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.....tgsgpfse 95 
                 ++l+ Ga+  IG+ +a+++a++G+kv++++r+ ++   +a+++k        i+ D++d e+v  +++++++ lg   v+v NA+      +++    +
  KKY18368.1 876 IILILGAGPNIGHHVARAFAAKGYKVAIASRRLNEEDSTADQVK--------ISSDLSDPESVVGVFSRVKASLGLPSVVVYNAAAatlndAKNPLSLS 966
                 79******************************999999999988........89*******************************99998777778889 PP

                 CSHHHHHHHHHHHTHHHHHHHHHHH CS
   adh_short  96 lseeewervievNltgvflltravl 120
                 ls +++ r +++N  ++f ++++++
  KKY18368.1 967 LSLKDFTRDFNINTASAFVAAQQAV 991
                 9******************999875 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.1e-06    0.0039       1      66 [.     877     940 ..     877     972 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.1e-06
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-S CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpd 66 
                 il++Ga   iG ++++a+++kgy+v   +r+ +++ + +++    +  dl d++++  +f+++++ 
  KKY18368.1 877 ILILGAGPNIGHHVARAFAAKGYKVAIASRRLNEEDSTADQ--VKISSDLSDPESVVGVFSRVKAS 940
                 89**********************99999996666555444..6789*************988754 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     7e-05      0.13       3      65 ..     877     958 ..     875     962 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7e-05
                    EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT.............T--TTSHHHHHHHHHHH--S......EEEE------HH CS
  RmlD_sub_bind   3 ilvtGanGqlGseLakqlaeeglevlaltre.............eldltdaeavaellkeakpd......vvvnaAAytavD 65 
                    il++Ga+  +G ++a+++a++g++v   +r+             + dl+d+e+v  +++ +k +      vv+naAA t  D
     KKY18368.1 877 ILILGAGPNIGHHVARAFAAKGYKVAIASRRlneedstadqvkiSSDLSDPESVVGVFSRVKASlglpsvVVYNAAAATLND 958
                    89*********************999998989************9*************998876566666788999988666 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   6.8e-05      0.12       1      65 [.     877     937 ..     877     942 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.8e-05
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT- CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgv 65 
                 Il++Ga  ++G +v+ra++++g+kv +  R +++e +++      + ++ dl d es+v +++ v
  KKY18368.1 877 ILILGAGPNIGHHVARAFAAKGYKVAIASRRLNEEDSTA----DQVKISSDLSDPESVVGVFSRV 937
                 89****************************997765432....2334667777777777777666 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00011      0.19      39      77 ..     877     916 ..     863     929 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
                   EEEES-S.HHHHHHHHHHHHTT-EEEEESSSHHHHHCHHH CS
  2-Hacid_dh_C  39 vGiiGlG.rIGqavakrlkafgmkviaydrskkkeeeeee 77 
                   + i+G+G +IG++va+ ++a g kv + +r+ ++e+++++
    KKY18368.1 877 ILILGAGpNIGHHVARAFAAKGYKVAIASRRLNEEDSTAD 916
                   679999988**********************998873332 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00018      0.32      13      57 ..     875     919 ..     861     965 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
                   -EEEEES-S.HHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT CS
  Shikimate_DH  13 kkvlliGaG.emaelvakhLlakgvkkvvvaNRtlerakelaeelk 57 
                   + +l++GaG ++++ va++++akg+k v++a R l+  ++ a+++k
    KKY18368.1 875 AIILILGAGpNIGHHVARAFAAKGYK-VAIASRRLNEEDSTADQVK 919
                   5689*****66899***********9.********99999999985 PP

>> DUF4180  Domain of unknown function (DUF4180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.027        48      61     101 ..     364     402 ..     362     408 .. 0.88
   2 ?   -3.9   0.0       7.1   1.3e+04      81     107 ..     565     591 ..     557     593 .. 0.74
   3 ?    4.5   0.0     0.018        33      64     107 ..     947     990 ..     943     993 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.027
     DUF4180  61 QkfvnYrlklaivGDisaylaaskaLrdfvyEsnkgkqiff 101
                 Qk v++  +++++  + ++l+ +k++r f+  sn+++++ +
  KKY18368.1 364 QKSVKWAPEMIML--FWEALQCNKRFRSFIIDSNRSHDFVI 402
                 8888888888888..999999***************99876 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 7.1
     DUF4180  81 aaskaLrdfvyEsnkgkqiffvadeee 107
                 ++ +aLr f  Es +++  ++++ ++e
  KKY18368.1 565 KKLEALRTFTLESGQEELERMARRRKE 591
                 567899999999998887777776666 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.018
     DUF4180  64 vnYrlklaivGDisaylaaskaLrdfvyEsnkgkqiffvadeee 107
                 v Y+   a + D ++ l+ s +L+df +  n ++   fva +++
  KKY18368.1 947 VVYNAAAATLNDAKNPLSLSLSLKDFTRDFNINTASAFVAAQQA 990
                 7799*****************************99999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.51
# Mc/sec: 6573.37
//
Query:       KKY18369.1  [L=460]
Description: putative homogentisatedioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-199  663.5   0.1   1.3e-199  663.3   0.1    1.0  1  HgmA      homogentisate 1,2-dioxygenase


Domain annotation for each model (and alignments):
>> HgmA  homogentisate 1,2-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  663.3   0.1  7.3e-204  1.3e-199       1     426 []      13     441 ..      13     441 .. 0.98

  Alignments for each domain:
  == domain 1  score: 663.3 bits;  conditional E-value: 7.3e-204
                 -EEE-TT--EEETTSTT-S-SS-S--SS-GGG-EEEEEESS-TTS-GGG--EEEEEESS-TT-S---EE--..-TB----CCCS----S-EEE-S---- CS
        HgmA   1 kylsGfgnefesealkgalPegqnsPqkapyglyaeqlsGtaftaprsenkrsWlyrirPsvahepfekleeaeeklvaelkeeasapnqlrWkPlelp 99 
                 +yl+Gfg+++e+ea+kgalP+g+nsPqk +yglyae++sGt+ftapr+en +sWlyri+P++ah++fe++ e+e+    + ++ ++ pnqlrW+P++  
  KKY18369.1  13 NYLHGFGSYHETEAIKGALPVGHNSPQKPAYGLYAEKFSGTSFTAPRHENLQSWLYRILPAAAHQAFEPIPESEHPYGLSGSDVQQIPNQLRWDPFDFD 111
                 59***********************************************************************9999999999***************5 PP

                 TT----TTTTEEEEEEECECCCTEEEEEEEEEE-S--.-SEEEEESSEEEEEEEEES-EEEEETTEEEEE-TTEEEEE-TT--EEEE-S.SSEEEEEEE CS
        HgmA 100 seekvdfveglltlagagdalsrtGlaihlylanksm.edkafynadGellivpqkGelelvtelGrlkvepgeiaviprGvrfkveledeearGyile 197
                   e+vd++ gl+ +a agd+ +++Glai++++a k+m e +afy+adG++livpq+G l+++telG++ v+++ei+viprG+r++v+l ++  rGyi+e
  KKY18369.1 112 --ENVDWIRGLHLVAEAGDPVMKSGLAIFVFTAGKDMpETEAFYSADGDFLIVPQHGVLDIQTELGQILVQANEICVIPRGIRYRVTLPSGSGRGYICE 208
                 ..8**********************************55689********************************************************* PP

                 EES--EE----GGGTTS-BS-GGGEEEE-------EEEEEEEEEEETTEEEEEEEEE-S--EEEEEES---EEEEGGG-B----SSSS---GGGGEEEE CS
        HgmA 198 vygakfklPdlGPiGanglanprdfkaPvaayedkeskeltviskfqgklfaakldhspldvvaWhGnyvPykydlkkfnvinsvsfdhpdPsiftvlt 296
                  y+ +f+lP+lGPiG+nglanprdf++P+a y ++ ++e ++++kf+++lf a++ hsp+dvvaWhG y+Pykydl +fn+i+s+s+dhpdPsiftvlt
  KKY18369.1 209 LYQGHFQLPELGPIGSNGLANPRDFQIPIASYTHDTTTEWHMVTKFNKRLFRARQSHSPFDVVAWHGTYYPYKYDLGRFNTIGSISYDHPDPSIFTVLT 307
                 *************************************************************************************************** PP

                 EE-SSTT-EEEEEEEE-SEEE--TTS--S---B--SSEEEEEEEE---------.--TT-EEEE-TT--B---HHHHHHHHHS----EEEST.-EEEEE CS
        HgmA 297 apsekeGvaivdfvifpPrWlvaektfrPPyyhrnvmsefmGlieGaydakeeG.fvpgGaslhslmtahGPdaesfekaskaelkPekidd.tlafmf 393
                 +ps+++G+ai+dfvifpPrWlvae+tfrPPy+hrn+msefmGli G ydak +G f p+Gaslh++m+ahGPda+++  as+aelkP+k+ + +lafmf
  KKY18369.1 308 GPSDHHGTAIADFVIFPPRWLVAEDTFRPPYFHRNTMSEFMGLIAGDYDAKVGGgFRPAGASLHNIMSAHGPDAKTHPGASEAELKPQKVGEgSLAFMF 406
                 ***************************************************9766*************************************9****** PP

                 EESS--EE-HHH.HH-----------.-------- CS
        HgmA 394 esslvlavtela.aelealdedylec.Wqglkkkf 426
                 es+l+l vte++ +++e+++ +y++  W++l+++f
  KKY18369.1 407 ESCLMLGVTEWGlKHCEKVQVKYNKEsWEPLRSHF 441
                 ************8899*******8755*****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2950.79
//
Query:       KKY18370.1  [L=580]
Description: putative flavin-containing amine [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-61  209.4   0.0    1.5e-61  209.1   0.0    1.1  1  Amino_oxidase  Flavin containing amine oxidoreductase
    8.8e-16   58.0   0.0    1.7e-15   57.1   0.0    1.4  1  Ribonuc_L-PSP  Endoribonuclease L-PSP
    1.9e-15   56.9   0.2    4.5e-15   55.6   0.2    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    2.4e-09   36.8   0.5    3.5e-09   36.3   0.5    1.2  1  FAD_binding_2  FAD binding domain
      2e-08   34.2   1.3    3.7e-08   33.3   1.3    1.6  1  DAO            FAD dependent oxidoreductase
    2.2e-06   27.1   0.2    4.7e-06   26.0   0.2    1.5  1  Thi4           Thi4 family
    5.2e-06   25.9   0.0     0.0062   15.8   0.1    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    9.4e-06   25.2   0.1    1.2e-05   24.9   0.1    1.2  1  FAD_oxidored   FAD dependent oxidoreductase
    6.8e-05   22.2   0.0     0.0001   21.7   0.0    1.2  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00011   21.1   0.3    0.00023   20.0   0.1    1.6  2  HI0933_like    HI0933-like protein
    0.00019   20.8   0.3    0.00028   20.2   0.3    1.2  1  FAD_binding_3  FAD binding domain
     0.0002   21.8   0.3    0.00066   20.2   0.3    1.9  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    0.00089   18.4   0.2     0.0013   17.9   0.2    1.2  1  GIDA           Glucose inhibited division protein A
     0.0026   16.9   0.1      0.025   13.6   0.2    2.0  2  Lycopene_cycl  Lycopene cyclase protein
  ------ inclusion threshold ------
      0.012   14.9   0.0      0.021   14.2   0.0    1.3  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.1   0.0   1.2e-64   1.5e-61       1     452 []     130     572 ..     130     572 .. 0.86

  Alignments for each domain:
  == domain 1  score: 209.1 bits;  conditional E-value: 1.2e-64
                    HHHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEETTEEEESS--EEET.TTHHHHHHHHHTTCCCCEEEESCCGCEEEEETTEECC......... CS
  Amino_oxidase   1 laGLaaArqLlsaGfdVtvlEardrvGGRirtvrsdGylielGamwftg.agnpllellkelgledslslpdpgapkrvlskggref......... 86 
                    l+GL aA+ L+ aG+ +tvlEar+rvGG+  +++ +G ++++Ga w+++ +++ ++el+k+++le  ++  + +   ++ +  gr+          
     KKY18370.1 130 LSGLQAAYDLQKAGLTCTVLEARERVGGKTLSRNASGGIVDVGAAWINDtNQSRMFELAKHFKLEVLVQNTNGN--IAIEDSIGRKGchlygevlq 223
                    79***************************************************************999944444..23333333333333243333 PP

                    .......TTEECHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHH CS
  Amino_oxidase  87 .......pgdlspvpaewealleqgalsaellsleeklrlgleallqktldeldldskslaesleelgrrepgdvev..wdrliepelfaklefas 173
                            +d  ++  ++e+ ++       +l++++ +  +  + +       d d  +l++++++ g+ + + +++  w+r ++     + + +s
     KKY18370.1 224 hpefktaIEDMVRIRDLVEETCQ-------KLDITDPIGSAKSLGK-------DMDAMTLEQWIRSEGGGQYSLDTAtvWTRAMLG---LEPSEVS 302
                    44443332233333333333333.......5777777777776666.......99999999999887766666555566******7...8888999 PP

                    HCHTSTTTTCBHHHHTCCCCHHHHHTSCCCEETTHTHHHHHHHHHTTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S-HHHHHSSE CS
  Amino_oxidase 174 glfagdpselsaklalpllwelegfggslllprgGlsqlpealaeelrgldirlntrVkeikregdgvtvtledgevveaDaVvvTvplgvlkail 269
                    +l++   +   ++  l++ + + + gg+ l++r G ++  + la  l+++++ l ++V++i++ ++g  vt   ge +++++V+v vp +  k i 
     KKY18370.1 303 ALYFL--DYCKSGGGLMQMRSDRKDGGQYLRIRQGTQSFSKGLAGLLSPDTLMLKSPVRKIRQVDNGAIVTSARGE-YRCRKVIVSVPTPLYKEII 395
                    99998..5599999*************************************************9999999776666.5****************** PP

                    EESCCSHHHHHHHHHSEEEEEEEEEEEESSGGSGCSTSECECECCCEEETTTEEEEECCECCCSTTTEEEEEEEEECHHHHHHHTTS-HHHHHHHH CS
  Amino_oxidase 270 fsPplpdekaeairnlgfgsvnkvilefdrkfwednalgqgvlvseltttlgeafissdfpsrappgkglvllvyvggdaaneleslsdeelvqav 365
                    f+P+lpd k +     ++gs +k+i ++++++w++        ++ l  ++  +f  +   s +  g+   l+ +++g  a+e+++ls++ +  av
     KKY18370.1 396 FEPELPDSKIKLSSGTKLGSYCKAIACYKTPWWRKY------NMCGLAQSPVGPFAVTRDTSDDAVGHFS-LTCFIVGQPAREWAKLSPDGRRTAV 484
                    ***********************************6......6899999999999997777777777777.************************* PP

                    HHHHHHHHT..GTSSTCSEEEEEECCTETTT.SSSEEE.BTTHHHHHHHHHHCHHCSTTEEE.SGGGCTTTTTSHHHHHHHHHHHHHHHH CS
  Amino_oxidase 366 lrdLrklfg..eevpepkatlvtrWhtdpla.rgsysyvsvgpghedydplakpegdprlffAGehtsreypgtvegAilSGlraAaril 452
                    ++++++++g  ++ ++p++++   W ++ ++ +    ++++g+ +e +d+l++p   + ++f G  t+ e+ g++egA++SG r A+++l
     KKY18370.1 485 IDQVARAYGpfAKPEDPVDVVEQIWAEEQWSqGCPCPAMPPGVMTELFDALRAP--FGKIHFVGTETAYEWKGYMEGAVRSGERGAQEVL 572
                    *******************************77789******************..********************************97 PP

>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   1.4e-18   1.7e-15      19     120 ..      13     112 ..       5     113 .. 0.89

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 1.4e-18
                    TEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGG.HHHHHHHHHHHSSSSTS--EEEEEE-SBSG.GG-S CS
  Ribonuc_L-PSP  19 nlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladied.faevnevyaeafdelkeaParsaveVaaLp.kgak 112
                     +v ++Gq+++d  +g++ ++d+e q r a++nl+++L+aagas +d++k+t ++++ +   ++ ++ + e++     +Pa++++ V aL+ ++++
     KKY18370.1  13 TIVTTAGQVGSD-INGNV-PEDPELQIRLAFRNLSRCLEAAGASTDDILKLTYYIVNYDPsNRRHRAPLLEFLGSS--RPASTLIPVPALAePQYL 104
                    57999******9.59997.**************************************9984566677777777777..6***************** PP

                    EEEEEEEE CS
  Ribonuc_L-PSP 113 vEIeaiav 120
                    +EIea+a+
     KKY18370.1 105 FEIEAVAA 112
                    ******97 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.2   3.7e-18   4.5e-15       1      67 [.     125     190 ..     125     191 .. 0.95

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 3.7e-18
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETTCEECTS---EEETTHHHHCHHHHCC CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpgvrvdygahifhgsgyypnvrrllre 67 
                    +vGaGlsGl aAy L+kag+ +++le+r+r+GG+  s++  g +vd+ga +++++ ++ ++++l+++
     KKY18370.1 125 VVGAGLSGLQAAYDLQKAGLTCTVLEARERVGGKTLSRNASGGIVDVGAAWINDT-NQSRMFELAKH 190
                    8*****************************************************7.59999999876 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.5   2.9e-12   3.5e-09       1      46 [.     122     169 ..     122     191 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 2.9e-12
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS..GGGG--S-EE CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefgg..atawsqGgid 46 
                    Dv+V+G+Gl+GL AA+ +++aGl+++v+e  +++gg   +  ++Ggi 
     KKY18370.1 122 DVVVVGAGLSGLQAAYDLQKAGLTCTVLEARERVGGktLSRNASGGIV 169
                    9***********************************765667777774 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   1.3   3.1e-11   3.7e-08       1      64 [.     122     191 ..     122     386 .. 0.73

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 3.1e-11
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTS.SGGGSSEEEE....ESSSSTHHSTHHHHHHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiags.gaSgrnsgll....hsglrylpeaselarlslea 64 
                 dvv++G+G  Gl +Ay+L+++g   t+le+++++g    S ++sg +    ++++ ++  +s++++l+++ 
  KKY18370.1 122 DVVVVGAGLSGLQAAYDLQKAGltCTVLEARERVGGkTLSRNASGGIvdvgAAWINDTN-QSRMFELAKHF 191
                 9*****************999**********9999624455555555455444444333.33666666655 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.2     4e-09   4.7e-06      16      56 ..     119     158 ..     109     169 .. 0.90

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 4e-09
                 TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TT CS
        Thi4  16 aesDvvivGaGssGLtaayylakkpdlkvailersvspGGG 56 
                  + Dvv+vGaG sGL aay l k+ +l  ++le++  +GG 
  KKY18370.1 119 RDVDVVVVGAGLSGLQAAYDLQKA-GLTCTVLEARERVGGK 158
                 678********************9.**********999995 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   5.2e-06    0.0062     159     198 ..     115     154 ..     106     208 .. 0.73
   2 !    7.9   0.0    0.0014       1.7     100     131 ..     354     385 ..     351     402 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.2e-06
  Pyr_redox_3 159 fhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgse 198
                  ++++++ +vvV+G++ S+  aA++l ++g + tv+  ++ 
   KKY18370.1 115 WNPLRDVDVVVVGAGLSGLQAAYDLQKAGLTCTVLEARER 154
                  5566666666666666666666666666666666655544 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0014
  Pyr_redox_3 100 lfeeVesvkkedegfevetsketyeAkkviiA 131
                  l++ V+++ + d+g +v++ +++y+++kvi++
   KKY18370.1 354 LKSPVRKIRQVDNGAIVTSARGEYRCRKVIVS 385
                  6789**************************97 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1     1e-08   1.2e-05       1      41 [.     122     162 ..     122     284 .. 0.64

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1e-08
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsg 41 
                   DvvVvG+g++G+ AA+   +aG +  ++e r+++GG + s 
    KKY18370.1 122 DVVVVGAGLSGLQAAYDLQKAGLTCTVLEARERVGGKTLSR 162
                   9***********************************86432 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   8.6e-08    0.0001     143     183 ..     121     162 ..      84     205 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 8.6e-08
                  SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
  Pyr_redox_2 143 krivvvGgGyiGvElAaalaklgkevtlveardrll.raldk 183
                   ++vvvG+G+ G+  A  l k+g   t++ear+r+  ++l +
   KKY18370.1 121 VDVVVVGAGLSGLQAAYDLQKAGLTCTVLEARERVGgKTLSR 162
                  677888888888888888888888888888887777554444 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   1.9e-07   0.00023       2      40 ..     122     160 ..     121     196 .. 0.91
   2 ?   -2.4   0.0       1.2   1.4e+03     126     161 ..     352     385 ..     351     386 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.9e-07
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHH CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKil 40 
                  dv+v+G+G +Gl aA  ++k+g   ++le+ +++g K l
   KKY18370.1 122 DVVVVGAGLSGLQAAYDLQKAGLTCTVLEARERVGGKTL 160
                  8**********************************9976 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
                  EE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE- CS
  HI0933_like 126 lrletevksvekeedgkfrvktkseeeleadklvlA 161
                  l+l++ v+++++ ++g   v+   ++e++++k++++
   KKY18370.1 352 LMLKSPVRKIRQVDNG-AIVTS-ARGEYRCRKVIVS 385
                  5678899999887777.55555.799********97 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.3   2.4e-07   0.00028       1      34 [.     120     153 ..     120     162 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.4e-07
                    EEEEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3   1 etdVlIVGaGpaGlmlallLseaGvrvvlvekrs 34 
                    ++dV++VGaG++Gl +a  L++aG  ++++e r+
     KKY18370.1 120 DVDVVVVGAGLSGLQAAYDLQKAGLTCTVLEARE 153
                    689****************************987 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.3   5.6e-07   0.00066       2      37 ..     123     159 ..     122     169 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 5.6e-07
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TT CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkll.rl 37 
                 vvvvG+G++gl +A  l++ g   tv+e+++++  + 
  KKY18370.1 123 VVVVGAGLSGLQAAYDLQKAGLTCTVLEARERVGgKT 159
                 8*******************************99443 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   1.1e-06    0.0013       1      33 [.     122     154 ..     122     208 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.1e-06
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GG CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLithkld 33 
                 dv+V+G+G++G+ AA+ + ++G+  + +  +  
  KKY18370.1 122 DVVVVGAGLSGLQAAYDLQKAGLTCTVLEARER 154
                 79*********************9888744433 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.2   2.1e-05     0.025       1      35 [.     122     154 ..     122     160 .. 0.93
   2 ?    0.7   0.0      0.17   2.1e+02      88     142 ..     338     389 ..     318     400 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.1e-05
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieasps 35 
                    Dvvv+GaG+ gl+ A  l  +k+gl  +++ea + 
     KKY18370.1 122 DVVVVGAGLSGLQAAYDL--QKAGLTCTVLEARER 154
                    9*****************..**********99876 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.17
  Lycopene_cycl  88 rlkeellerlvengvklleakvesveeeeageslvvleggrkirarlvvdargla 142
                     + + l+  l      +l++ v +++++++    +v+++  + r+r v+++ + +
     KKY18370.1 338 SFSKGLAGLLS-PDTLMLKSPVRKIRQVDN--GAIVTSARGEYRCRKVIVSVPTP 389
                    45555554444.6778899********999..67888888899*******99865 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.7e-05     0.021      28      78 ..     120     180 ..     105     275 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.7e-05
                  --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH..TTTCECEE........H CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglgakVtvlDvrparleqles..lgakfvev........l 78 
                     v+v+G+G  GlqA+   ++ g + tvl+ r+++  +  s    + +v+v         
   KKY18370.1 120 DVDVVVVGAGLSGLQAAYDLQKAGLTCTVLEARERVGGKTLSrnASGGIVDVgaawindtN 180
                  568*****************************99987665554533333666666665552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.48
# Mc/sec: 3641.60
//
Query:       KKY18371.1  [L=318]
Description: hypothetical protein UCRPC4_g04988 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-07   30.0   0.0    1.6e-05   24.5   0.0    2.7  3  Glyco_hydro_16  Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   8.6e-10   1.6e-05      29      98 ..      89     162 ..      55     178 .. 0.78
   2 !    2.4   0.1    0.0052        94      25      46 ..     179     200 ..     168     219 .. 0.83
   3 ?   -2.3   0.0      0.15   2.7e+03     152     168 ..     267     283 ..     254     293 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 8.6e-10
                     EEEEEEEECCEESSEEEEEEEE..---STTEEEEEEEETGG.TSTTEEEEE.EEETT-TTEEEEEEE.BTTBSGE CS
  Glyco_hydro_16  29 esgsrikskksflyGkvearik..aaksaGvvtafylssed.ekahdEiDi.EflGndtgkvqtnvy.gkGkgkr 98 
                     + ++r++s ++f  G + ++i   +a   G+++af+l  ++ ++  +EiDi E + n  ++ q++++ ++G +++
      KKY18371.1  89 RPSTRVSSMDTFNQGLFIVDIVhaPAGICGTWPAFWLLGSGmWPYGGEIDIfEGV-NAGETNQMTLHtSPGCTNT 162
                     55899999999****99999997677778********76455*********9988.6677789999944566555 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.0052
                     EEEEEEEEEEEECCEESSEEEE CS
  Glyco_hydro_16  25 tldkesgsrikskksflyGkve 46 
                     +++++sg++iksk+ ++yG ++
      KKY18371.1 179 NTENNSGCGIKSKDPQTYGLFN 200
                     5667899************875 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.15
                     EEEEEEEEEBSHHHSSE CS
  Glyco_hydro_16 152 mkvavslwpgsdwateq 168
                       ++ + w+g+ w+t+ 
      KKY18371.1 267 DTTFCGDWAGKVWSTSS 283
                     34556688888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2299.69
//
Query:       KKY18372.1  [L=1338]
Description: hypothetical protein UCRPC4_g04989 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-10   39.7   0.0    8.5e-10   38.6   0.0    1.5  1  POT1      Telomeric single stranded DNA binding POT1/CDC13


Domain annotation for each model (and alignments):
>> POT1  Telomeric single stranded DNA binding POT1/CDC13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   4.8e-14   8.5e-10      27     141 ..    1083    1202 ..    1059    1203 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 4.8e-14
                  CC...SCCEEEEECCCCCTTT..........SCCHCTTTEE.EEEEEECCCCCCCCGGCCCCEEECCCCEEEESTTSCECCSEEEEEEECCCTTSCE CS
        POT1   27 kk...tggsdyvctfkivDps..........knkgdendgl.rvvlFsknfedLpivkkvgdiirlhraklqsyngepqglanigfssswalFngnl 109 
                  +k   +g +dy +t++i+Dp+          knk+  n ++ ++++F++  + Lp   k gd+i+l+ +k+qs ++e + l++ g+   w +F ++ 
  KKY18372.1 1083 IKrapSGPRDYYTTLHITDPTishnnvhsngKNKLPINLHAtTAQIFRPWKNALPAT-KKGDVILLRCFKVQSRKHEITLLSTEGSG--WVVFPSE- 1175
                  336779***********************9999999887762579***********9.*****************************..******8. PP

                  EEEECCCCCSTSTTCCCCSHCCHHHHHHHHHH CS
        POT1  110 nailletppilsskffelskeekkylkdlrkw 141 
                      +++++  ++ ++e +++e +++ +lr w
  KKY18372.1 1176 ----SPEEQVHGP-PVEYGEKERQHAMKLRTW 1202
                  ....667777777.9**********9999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.35s 00:00:01.23 Elapsed: 00:00:00.52
# Mc/sec: 7772.62
//
Query:       KKY18373.1  [L=350]
Description: putative cytochrome p450 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-43  147.6   0.0    5.7e-43  147.3   0.0    1.0  1  p450          Cytochrome P450
  ------ inclusion threshold ------
      0.047   13.9   0.0       0.08   13.2   0.0    1.3  1  Flavodoxin_5  Flavodoxin domain


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.3   0.0   6.4e-47   5.7e-43     104     416 ..       7     331 ..       1     332 [. 0.84

  Alignments for each domain:
  == domain 1  score: 147.3 bits;  conditional E-value: 6.4e-47
                 HHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHH.HHHHHHHHHHHHHCHHHHCCCCCHHHTC CS
        p450 104 ptltsfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklse.lvkaveelssllskssvqllllfpllky 200
                 + ++s++   ++e  ++e ++ l +k+ + ag+  +l +++  +    dv+++ +F ++++ l++++++e + +a++      s++ +q+ +l p+lk+
  KKY18373.1   7 NPFFSKKRVvAFEHHIQEKVQSLKDKISEYAGTDRVLPLHRAYTALIGDVVTEYCFAKSYGHLKSPDFTEtFHEAMHSTC-RSSTFLHQFPFLWPILKV 104
                 45666645579********************************************************8651445555554.555889999999999999 PP

                 CSCHHHHHHH....HHHHHHHHHHHHHHHHHHHCHCHCSC.SSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH CS
        p450 201 lptkllrklk....eavkklkdlldklieerretldsakk.srrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPe 294
                 lp+++  +++     + +++ d+ +++   ++ + +s+k  ++ ++   +l+a  +     + s + l +++ ++++a++ Tts+  + a +++ +nPe
  KKY18373.1 105 LPDWFVVMIEpsflIHINVQRDFRKEITALKEGKNSSRKTaDHPTLFYEMLNAP-DLPP-GEKSIDRLEEEAQVIIGAAILTTSWSAAVASFHITNNPE 201
                 998876544311113346667777777766666666662203333444444442.4444.599************************************ PP

                 HHHHHHHHHHHHC.CTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TT CS
        p450 295 vqeklreEidevl.gdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldek 392
                 v +kl+ E+ +++    + ++++++++lpyl avikE  Rl   + ++lpR++ +d++ ++  ip+G  +++ +  ++++++vfp+  +F peR+ +++
  KKY18373.1 202 VYHKLHTELVSAIpDPFQAIRWSQVENLPYLSAVIKEGIRLAYGIASRLPRVARNDLKYQNWIIPAGVPISMTILDINHSEDVFPDSYKFLPERWISTD 300
                 *************98899*******************************************************************************99 PP

                 S.......CTESSCTT--TTEEGGGS-TTHH CS
        p450 393 g.......nskrksfaflPFGaGpRnCiGer 416
                         n    + +f++F+ G RnCiG++
  KKY18373.1 301 PtfspkapNGLPLEKYFVGFSKGSRNCIGQK 331
                 999999987777899**************95 PP

>> Flavodoxin_5  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.9e-06      0.08      31      76 ..     160     205 ..     149     212 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.9e-06
  Flavodoxin_5  31 vedvekesedlesydavvigasvyygkllpelakFvekhreaLstk 76 
                   + + ek+ ++le+  +v+iga++ + +++ ++a+F  ++ +++++k
    KKY18373.1 160 LPPGEKSIDRLEEEAQVIIGAAILTTSWSAAVASFHITNNPEVYHK 205
                   55566778899****************************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.48s 00:00:01.02 Elapsed: 00:00:00.70
# Mc/sec: 1501.29
//
Query:       KKY18374.1  [L=256]
Description: putative methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-22   79.0   0.0    5.2e-22   78.4   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    6.4e-12   46.0   0.0    1.7e-11   44.7   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
    4.1e-09   36.4   0.0    1.1e-07   31.7   0.0    2.5  2  Methyltransf_31  Methyltransferase domain
    2.3e-08   34.7   0.0    3.1e-07   31.0   0.0    2.6  2  Methyltransf_12  Methyltransferase domain
    2.2e-07   31.4   0.0    5.3e-07   30.2   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
     0.0016   17.9   0.0     0.0047   16.3   0.0    1.7  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
       0.01   15.9   0.0      0.022   14.9   0.0    1.4  1  FtsJ             FtsJ-like methyltransferase
      0.024   14.2   0.0      0.042   13.4   0.0    1.4  1  MTS              Methyltransferase small domain
      0.054   13.2   0.0      0.085   12.6   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
       0.12   11.6   0.0        0.5    9.6   0.0    1.8  2  CMAS             Mycolic acid cyclopropane synthetase
        0.2   11.0   0.0       0.36   10.2   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0   3.2e-25   5.2e-22      23     164 ..      20     174 ..       4     175 .. 0.75

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 3.2e-25
  Methyltransf_23  23 ggrvLdiGcGtGillevlrengf...svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatllkpg 112
                        rvLd+GcGtGi++  ++++     +v+g Dlsp++ + ++ + k++++d + ++   +pq++fd+I+ r + +++ d+p+l++qi+++l+pg
       KKY18374.1  20 TFRVLDMGCGTGIWAVDFADECSsnvEVIGCDLSPIQPAFVPpSCKFYIDDLE-SEWTYPPQQHFDYIHGRALSGSIADWPKLFSQIRQNLRPG 112
                      349***************77632345999*******99998776666776666.44445699******************************** PP

  Methyltransf_23 113 Gylllseplaslkedrllld.........wlylvpagrhi.sffsarslkelleeaGlevve 164
                      G+++ +++ ++ ++d + l          ++    a+  +  + sa+++ + +++aG+++v+
       KKY18374.1 113 GWIEMQDYECDIYADDDTLAqvphltdwvNEINEAANSFGkPLKSAQNFVDYAKDAGFDDVQ 174
                      ********988854444333334433322122222223446899**************9997 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0     1e-14   1.7e-11       1      97 []      23     113 ..      23     113 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 1e-14
                      EEEET-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG.BSS.STTTEEEEEEESTGGGSSHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl.gkakvtgvDiseemleaareraeeeglnvefvqgdaed.lpf.edgsfDlvvssgalhhlsdedlekalkeiar 91 
                      vLd+GcGtG ++ ++a+++ ++ +v+g+D+s+ + + +         +++f+  d+e+ + + ++++fD+++ + al+  s +d++k++++i++
       KKY18374.1  23 VLDMGCGTGIWAVDFADECsSNVEVIGCDLSPIQPAFVPP-------SCKFYIDDLESeWTYpPQQHFDYIHGR-ALSG-SIADWPKLFSQIRQ 107
                      9******************659**********99998755.......569******6656643788*******5.6554.5569********** PP

                      HEEEEE CS
  Methyltransf_25  92 vLkpgG 97 
                       L+pgG
       KKY18374.1 108 NLRPGG 113
                      *****9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   6.9e-11   1.1e-07       2     120 ..      18     136 ..      17     169 .. 0.80
   2 ?   -2.0   0.0       1.7   2.8e+03      93     113 ..     213     233 ..     165     248 .. 0.67

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 6.9e-11
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklled.ekfDlilsnevlnaladpdkil 94 
                      d++ rvlD GCGtG  +  +a+e  ++ ev+G D s+  i+ A           ++F + d e+  + + + + fD+i+ +++   +ad +k +
       KKY18374.1  18 DQTFRVLDMGCGTGIWAVDFADECSSNVEVIGCDLSP--IQPAFV------PPSCKFYIDDLESEWT-YPPqQHFDYIHGRALSGSIADWPKLF 102
                      56789******************99***********9..777777......3468899999999554.44449*******9999********** PP

  Methyltransf_31  95 eeiervlkpggilliedpr........llaelpa 120
                       +i ++l+pgg + ++d+         +la++p+
       KKY18374.1 103 SQIRQNLRPGGWIEMQDYEcdiyadddTLAQVPH 136
                      ****************999667665555555553 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.7
  Methyltransf_31  93 ileeiervlkpggilliedpr 113
                       + ++ ++  ++ +++i+ ++
       KKY18374.1 213 LYTRVLNYTADEARIIIAKVK 233
                      344555555555555555555 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   1.9e-10   3.1e-07       1      99 []      24     115 ..      24     115 .. 0.93
   2 ?    0.3   0.0      0.72   1.2e+03      64      90 ..     199     233 ..     140     243 .. 0.68

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1.9e-10
  Methyltransf_12   1 LeiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklL 93 
                      L+ GcGtG  +  ++++  +++e++g+D+sp + +      ++++++  +++++  ++        +fD+++   +   ++d+ +++++ir+ L
       KKY18374.1  24 LDMGCGTGIWAVDFADECsSNVEVIGCDLSPIQPAFVPPSCKFYIDDLESEWTYPPQQ--------HFDYIHGRALSGSIADWPKLFSQIRQNL 109
                      89*************9999***************888888888888888888888777........**************************** PP

  Methyltransf_12  94 kpgGrl 99 
                      +pgG++
       KKY18374.1 110 RPGGWI 115
                      ****86 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.72
  Methyltransf_12  64 g.......ssfDlvvasnvlhhl.kdirevldnir 90 
                      +       + f l +   vl+++ ++ r ++++++
       KKY18374.1 199 ReqflnsvEPFTLALYTRVLNYTaDEARIIIAKVK 233
                      04444455788899999999999655556666665 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   3.3e-10   5.3e-07       1      94 [.      24     115 ..      24     117 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 3.3e-10
                      EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC.TSS-T.T-EEEEEEES-CCC-CCHHHHHHHHHHHEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg...arvvgvDlskemlklakekaseeglkvefvvadaek.lpfed.nsfDlvvssevlhhvedpekalkeiaRvLk 89 
                      Ld+GcGtG+ a ++a+ +    +v+g+Dls+ + + +     ++   ++f   d+e+   ++  + fD +  +     ++d+ k++++i++ L+
       KKY18374.1  24 LDMGCGTGIWAVDFADECssnVEVIGCDLSPIQPAFV-----PPS--CKFYIDDLESeWTYPPqQHFDYIHGRALSGSIADWPKLFSQIRQNLR 110
                      8**************999999**********999555.....454..899999999754555538***************************** PP

                      EEEEE CS
  Methyltransf_11  90 pgGll 94 
                      pgG++
       KKY18374.1 111 PGGWI 115
                      ***97 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.9e-06    0.0047      47      82 ..      19      54 ..      12      56 .. 0.89
   2 ?   -3.2   0.0       2.7   4.3e+03     129     149 ..      95     115 ..      93     121 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.9e-06
                     -TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-H CS
  Ubie_methyltran 47 rgakvlDvagGtgDlafklsdsvgekgkvvvlDine 82
                     +  +vlD+ +Gtg +a++++d+  ++ +v+++D+++
       KKY18374.1 19 QTFRVLDMGCGTGIWAVDFADECSSNVEVIGCDLSP 54
                     45589****************************986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.7
                      -S-HHHHHHHHHHHEEEEEEE CS
  Ubie_methyltran 129 vtDklkaLkeayrvlkpGGrl 149
                      ++D +k + ++++ l+pGG +
       KKY18374.1  95 IADWPKLFSQIRQNLRPGGWI 115
                      578889999999999999976 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.3e-05     0.022      22      73 ..      20      74 ..       5      97 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.3e-05
                T-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCCS CS
        FtsJ 22 gktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditdp 73
                + +v+D g+++G w+   + ++  +  v+++Dl p++p    p ++++  d  ++
  KKY18374.1 20 TFRVLDMGCGTGIWAVDFADECSSNVEVIGCDLSPIQPAfvpPSCKFYIDDLESE 74
                346***********99999998778***********9887778888887777655 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.6e-05     0.042      30      61 ..      17      50 ..       4      58 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.6e-05
                C.TCSEEEEET-TTSHHHHHHHHHTTC..EEEEE CS
         MTS 30 e.lsgkvlDlGcGaGvlgaalakespea.evtlv 61
                + ++ +vlD+GcG+G+ ++ +a+e++++ ev  +
  KKY18374.1 17 SdQTFRVLDMGCGTGIWAVDFADECSSNvEVIGC 50
                235557***************9987763034444 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.2e-05     0.085      70     105 ..      16      51 ..       1      55 [. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.2e-05
                 T--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEE CS
        PCMT  70 elkkgarvLevGsGsGyltavlarlvgekgrvvsie 105
                 e ++  rvL++G+G+G+ ++ +a    ++  v++ +
  KKY18374.1  16 ESDQTFRVLDMGCGTGIWAVDFADECSSNVEVIGCD 51 
                 3467789*****************999999999987 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00031       0.5      62      98 ..      19      57 ..       4      74 .. 0.77
   2 ?   -0.5   0.0      0.37   6.1e+02     144     165 ..      97     118 ..      82     171 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00031
                TT-EEEEES-TTSHHHHHHHHHH..--EEEEEES-HHHH CS
        CMAS 62 pGmtlLdiGcGWGslvrravery..dvkvvglTlSkeqa 98
                +  ++Ld+GcG G  ++  +++   +v+v+g  lS  q 
  KKY18374.1 19 QTFRVLDMGCGTGIWAVDFADECssNVEVIGCDLSPIQP 57
                33479*********999999875338999**99997775 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.37
                 GHHHHHHHHHHHS-TT-EEEEE CS
        CMAS 144 nydtffkklkkllkedGllllh 165
                  +++ f+++ ++l+++G + ++
  KKY18374.1  97 DWPKLFSQIRQNLRPGGWIEMQ 118
                 5777788888888888877655 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00022      0.36     162     194 ..      20      54 ..       8      58 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00022
        PrmA 162 geevlDvGtGSGiLai..aaakLgakkvvavDiDe 194
                 + +vlD+G+G+Gi a+  a       +v++ D+ +
  KKY18374.1  20 TFRVLDMGCGTGIWAVdfADECSSNVEVIGCDLSP 54 
                 338***********993333444555677777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.53u 0.50s 00:00:01.03 Elapsed: 00:00:00.58
# Mc/sec: 1330.95
//
Query:       KKY18375.1  [L=436]
Description: putative protein tyrosine serine phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-51  175.2   0.0    4.3e-51  174.1   0.0    1.5  2  Y_phosphatase3  Tyrosine phosphatase family
     0.0019   17.8   0.0     0.0061   16.2   0.0    1.8  2  Y_phosphatase2  Tyrosine phosphatase family
  ------ inclusion threshold ------
      0.013   16.2   0.6      0.027   15.1   0.2    1.7  2  SnoaL_2         SnoaL-like domain
      0.084   11.8   0.0       0.16   10.9   0.0    1.5  1  Myotub-related  Myotubularin-like phosphatase domain
       0.17   11.4   0.0       0.31   10.5   0.0    1.4  1  Y_phosphatase   Protein-tyrosine phosphatase


Domain annotation for each model (and alignments):
>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.3   4.6e+03     106     119 ..      54      67 ..      31      89 .. 0.56
   2 !  174.1   0.0   1.2e-54   4.3e-51       2     231 ..     150     430 ..     149     431 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.3
  Y_phosphatase3 106 akkayrkvfealad 119
                     ++++y ++++++a+
      KKY18375.1  54 QSSTYDEFVKHVAH 67 
                     33333333333332 PP

  == domain 2  score: 174.1 bits;  conditional E-value: 1.2e-54
  Y_phosphatase3   2 plegvsNfRDlGgypt..adgrkvrpgvlyRsaelsklteadlakLad.lgirtviDLRspeErea...eap...legaryvhlpv......... 78 
                     +++g++NfR +Ggy++    g++vr+ ++yRsa +s+++e ++++++d l+i+t++DLRs+ E+++   + p   ++g+ + ++pv         
      KKY18375.1 150 TVAGIPNFRTIGGYAStlYPGHRVRSDLIYRSAITSRIQEPGIKTMTDdLNIKTIFDLRSSVESAKmgvTTPkpsIPGVSILETPVfpdsewtdr 244
                     789***********963468999****************************************777788444559899999****9999999999 PP

  Y_phosphatase3  79 .....e..eaaeeekeeeeaeetlaelYrellesakkayrkvfealadee............pvlfHCtaGKDRTGvlaalllsllGvdeediva 154
                          +  ++++  +e    ++ + + Y+++++sa +ay++v+++l++++            ++lfHCtaGKDRTGvl+a++l+l+Gvd+ +i++
      KKY18375.1 245 trmkeSwkQYTDPIDEILGYSKGFLQGYQRIASSAGPAYAQVLRHLLASNiqdsstvgsppkAILFHCTAGKDRTGVLTAIILKLCGVDHGTIAH 339
                     887652423466667777778889999999999*************995567799999999999******************************* PP

  Y_phosphatase3 155 DYlltneyleelrerlkakleeellaea.................leellsvrpeyleaaldaieekygsvegYlreelglseeeiealrerll 231
                     +Y lt+++l e re + +kl ee    +                 +e++ls+++e +ea+l+ ++ ++g++eg+l+ + gls ee+e  r+ ll
      KKY18375.1 340 EYSLTEAGLSEWREIIIQKLLEED---NyggdhdsdehrhvrrqqAERMLSSKRENIEAFLRWVDDDFGGAEGWLTGKAGLSGEEVEGVRTLLL 430
                     ************999988887763...2345778999***************************************************999887 PP

>> Y_phosphatase2  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.68   2.4e+03      13      41 ..     177     209 ..     172     216 .. 0.67
   2 !   16.2   0.0   1.7e-06    0.0061      94     129 ..     308     343 ..     300     365 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.68
                     TEEEESS--HHHHHHHHH....CT-SEEEE-SS CS
  Y_phosphatase2  13 elyrssyprasnfsflks....LkLktiislsp 41 
                      +yrs++ + +  + +k+    L++kti  l+ 
      KKY18375.1 177 LIYRSAITSRIQEPGIKTmtddLNIKTIFDLRS 209
                     689999988887766553223578888877765 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.7e-06
                     EEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHH CS
  Y_phosphatase2  94 vllhckrGkhrtglvigclRklqkWslasilnEyrr 129
                     +l hc+ Gk rtg++ +++ kl + + + i  Ey +
      KKY18375.1 308 ILFHCTAGKDRTGVLTAIILKLCGVDHGTIAHEYSL 343
                     89********************************86 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.2   7.4e-06     0.027       6      75 ..      25      97 ..      18     122 .. 0.72
   2 ?   -3.7   0.0         5   1.8e+04      11      23 ..     391     403 ..     383     408 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.4e-06
                HHHHTTCH....HHHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEETTEEEEEEEEEE CS
     SnoaL_2  6 aalnagdl....dalaalfapdvvwedpggelrGreairaffralfaafpdlrfeihdvvadgdrvavewtvtg 75
                + l agd+    +++a +f++d++ +  g + +  +++ +++++l+  ++ l++++++++ dg+ +  +  +t+
  KKY18375.1 25 NNLFAGDPsdaaSTVAKYFHADFTNTANG-QSSTYDEFVKHVAHLRSMMESLDIKVQEFLRDGNMISDRHIATA 97
                44447777222244556677777777665.68999*****************************9888766664 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5
                 TCHHHHHHTEEEE CS
     SnoaL_2  11 gdldalaalfapd 23 
                  +++a+++ +++d
  KKY18375.1 391 ENIEAFLRWVDDD 403
                 3455555555555 PP

>> Myotub-related  Myotubularin-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.4e-05      0.16     209     253 ..     282     326 ..     198     334 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.4e-05
                     -HHHHHHHHHHHHHHHHHHHHCS---EEEE-SSSSSHHHHHHHHH CS
  Myotub-related 209 kWlkhiksiLeaaaliaksvelekssvLvhcsdGwDrtsqlssla 253
                      + + ++++L++ ++  ++v    + +L hc+ G Drt +l++++
      KKY18375.1 282 AYAQVLRHLLASNIQDSSTVGSPPKAILFHCTAGKDRTGVLTAII 326
                     577888999999999999************************985 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   8.8e-05      0.31     168     199 ..     303     334 ..     273     357 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.8e-05
                    TTSS-EEEECSSSSHHHHHHHHHHHHHHHHHH CS
  Y_phosphatase 168 aksgpvvVhCsaGvgRtgtfvaldillqqlea 199
                    +  + ++ hC aG  Rtg++ a+ + l+ +++
     KKY18375.1 303 SPPKAILFHCTAGKDRTGVLTAIILKLCGVDH 334
                    34566999*************99887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.42s 00:00:01.00 Elapsed: 00:00:00.58
# Mc/sec: 2269.58
//
Query:       KKY18376.1  [L=1283]
Description: hypothetical protein UCRPC4_g04993 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-38  129.3  29.9    1.4e-27   96.0   5.2    4.0  4  DUF3433   Protein of unknown function (DUF3433)
  ------ inclusion threshold ------
      0.067   13.0   0.2       0.14   12.0   0.2    1.5  1  DUF126    Aconitase X swivel domain


Domain annotation for each model (and alignments):
>> DUF3433  Protein of unknown function (DUF3433)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.45     4e+03       5      18 ..     112     125 ..      83     134 .. 0.55
   2 !   96.0   5.2   1.5e-31   1.4e-27       1      90 [.     150     239 ..     150     240 .. 0.99
   3 !   46.4   5.8   4.5e-16     4e-12       2      91 .]     724     813 ..     723     813 .. 0.96
   4 ?   -0.9   0.6      0.26   2.3e+03      43      82 ..    1104    1142 ..    1094    1146 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.45
     DUF3433   5 flpalvavlisllw 18 
                 +++al+a+l++l  
  KKY18376.1 112 VVLALFALLFALIV 125
                 23333333333333 PP

  == domain 2  score: 96.0 bits;  conditional E-value: 1.5e-31
     DUF3433   1 flvsflpalvavlisllwaaldaavrrlaPFaaLahrgataersllldyratlpflallralrnrhwlvalvslvtllsellpvlasglf 90 
                 +l++++p++++v+++++w+++++a+++++P+a+La+++ taersllldy++ +p+++++ralrnrhw+val+++++ l+++++vl++glf
  KKY18376.1 150 YLWTYGPTAILVIVTVFWRQVEYAAKVITPWAELAKGPVTAERSLLLDYQTPFPLVSVWRALRNRHWAVALTIATMYLLKATTVLSAGLF 239
                 79***************************************************************************************9 PP

  == domain 3  score: 46.4 bits;  conditional E-value: 4.5e-16
     DUF3433   2 lvsflpalvavlisllwaaldaavrrlaPFaaLahrgataersllldyratlpflallralrnrhwlvalvslvtllsellpvlasglfy 91 
                  + ++p++v+vl+++l+ +ld+ +++ +P++aL+++ +  + s+l     + ++ a +ra+r++ ++++++++++ +s ll+++asglf+
  KKY18376.1 724 SWLYVPVFVLVLFGALFDMLDFYLQMSEPYHALSRSYSNSQISVLYTPLRLVKLHAAWRAIRTGRFALLASCVAVTISPLLTIVASGLFS 813
                 699*******************************87777778**********************************************95 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.26
     DUF3433   43 rsllldyratlpfl.allralrnrhwlvalvslvtllsell 82  
                  ++l+++y+   p    l+++  + ++lva+ +++ l + +l
  KKY18376.1 1104 KTLTASYTN--PYRtRLIQSNLSTQLLVAIFCILFLCALAL 1142
                  556666655..322256666666789999999999987666 PP

>> DUF126  Aconitase X swivel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   1.5e-05      0.14      39      78 ..     573     612 ..     570     614 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.5e-05
                 -SS-TTHHHHHHHHT-S-SEEEESS--HHHHHHHHHHT-- CS
      DUF126  39 StvgsyvllelakngtaPaAlilreadpilalGaivadiP 78 
                 +t+g+++l+ ++ + taP++++ r++d+i a++a +a+ P
  KKY18376.1 573 GTSGAMMLFTVLIYITAPRGVVPRSPDSINAVAATMAQSP 612
                 599**********************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.42s 00:00:01.29 Elapsed: 00:00:00.60
# Mc/sec: 6480.50
//
Query:       KKY18377.1  [L=335]
Description: putative translation initiation factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-54  184.2   0.1    2.3e-54  183.5   0.1    1.3  1  IF4E      Eukaryotic initiation factor 4E


Domain annotation for each model (and alignments):
>> IF4E  Eukaryotic initiation factor 4E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.5   0.1   1.3e-58   2.3e-54       2     157 ..     138     289 ..     137     291 .. 0.96

  Alignments for each domain:
  == domain 1  score: 183.5 bits;  conditional E-value: 1.3e-58
                 EEEEEEEEEE-TTT--SS-SGGG-EEEEEEEEHHHHHHHHHHS--GGGB-SSEEEEEEETT--SSTTSHHHHS-EEEEEEE-----HHHHHHHHHHHHH CS
        IF4E   2 LkskWtlwfdsksksksenyeeslkkvatfstveeFwslynnlkkpsklkvksdyhlFkkgikPmWEdpankkGGkwvirlkkkekldrlWeelllali 100
                 Lk++W+l++ + +++k ++ye+s+ ++a++stve+Fw++y++lk+ps+l++ sdyh+Fk+gi+P+WEd+ankkGGkw++rlkk ++ dr+We+llla++
  KKY18377.1 138 LKNTWVLFY-RPPTHKFSDYEKSTIQLASISTVENFWTIYSHLKRPSSLPTVSDYHIFKSGIRPVWEDDANKKGGKWIVRLKK-GVSDRYWEDLLLAIV 234
                 99*******.666689******************************************************************9.99************* PP

                 TT-SS--.-SEEEEEEEE-SSEEEEEEEES-TT-HHHHHHHHHHHHHT--------E CS
        IF4E 101 geqleeeedeicGvvvsvRkkedrisiWtrdasdeekvekigeklkevlelpeekkl 157
                 g+q++e++de+cG+v+svR+ ed +s+Wt+++    ++ ki+e++k++l++p ++++
  KKY18377.1 235 GDQFAEASDEVCGAVLSVRSGEDVLSVWTKND--GGRNIKIRETIKRLLQFPLDTNI 289
                 *******************************9..57999************998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.55
# Mc/sec: 1833.32
//
Query:       KKY18378.1  [L=1001]
Description: putative ulp1 protease family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-29  102.0   0.0    1.3e-28  100.4   0.0    1.8  1  Peptidase_C48  Ulp1 protease family, C-terminal catalytic dom


Domain annotation for each model (and alignments):
>> Peptidase_C48  Ulp1 protease family, C-terminal catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   0.0     7e-33   1.3e-28       2     184 ..     475     771 ..     474     784 .. 0.96

  Alignments for each domain:
  == domain 1  score: 100.4 bits;  conditional E-value: 7e-33
                    --BHHHHHHHHHHHHHHHHH.CCCTCCCEEE--THHHHHHC..........SS.......TCHCHHHCTTCCCCCS..-GGG-SEEEEEEEC.TTE CS
  Peptidase_C48   2 wlndtvidfylkllaerles.seskaervhflntffvskLtkavkdfkknkskkkfkeskkkdlyngvrrwtrkvnkedlfdkdiiyiPinedgkH 96 
                     lnd  i f+l++l ++l++  +++a +++f+nt+f+  Lt        n+ k     +kkk +y gv++wtr v    lf+ d++++Pine + H
     KKY18378.1 475 LLNDNLIGFFLRFLEQELQRtRPETAGKIYFFNTYFFATLT--------NPAK-----TKKKINYDGVKKWTRGV---NLFEHDFVIVPINE-NAH 553
                    79***************************************........3322.....333567***********...**************.*** PP

                    EEEEEEETCCC..................................................................................... CS
  Peptidase_C48  97 Wvlliinlpdk..................................................................................... 107
                    W+++ii++  k                                                                                     
     KKY18378.1 554 WYVAIICNLPKvlpgnadeeaeeaqslpqlraeppevtnvqriykrideptedqeppvpqkreplaeiaiddtdksfkdlnleseepprtsasdin 649
                    ************************************************************************************************ PP

                    ..................................................EEEEE-TTS-SSH.HHHHHHHHHHHHHHHHHCCCCCSTT-.GGGEE CS
  Peptidase_C48 108 ..................................................tililDSlislhtvkkenrpinnlkpyLleealkkkqkqldltpfe 153
                                                                       i ++DSl+ +++      +  +l++y +eea +k   ++d + ++
     KKY18378.1 650 eigslkrtwrvgsddkksmspagrsprggkgkraarrsgvgllkyntndpIIMTMDSLGLGRS-----PTTRALREYVVEEAQAKLGVEVDGSAIR 740
                    ***************************************************************.....9*************************** PP

                    EEEEE-----SSCCCHHHHHHHHHHHHHCTH CS
  Peptidase_C48 154 ierltkvpqqknsgDCGiyvlkfiellaega 184
                      +++++p q+n++DCG+y l ++e++ +++
     KKY18378.1 741 GMTAKGIPGQDNFSDCGLYLLAYMERFVQDP 771
                    ***************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1001 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.51
# Mc/sec: 5928.54
//
Query:       KKY18379.1  [L=104]
Description: putative plasma membrane proteolipid 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-21   76.1   7.8    2.2e-21   75.8   7.8    1.1  1  Pmp3      Proteolipid membrane potential modulator


Domain annotation for each model (and alignments):
>> Pmp3  Proteolipid membrane potential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   7.8   1.2e-25   2.2e-21       2      49 .]       8      55 ..       7      55 .. 0.95

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 1.2e-25
        Pmp3  2 illillaiilPPlaValksGcsadllinilLtllgylPgviHAfyiiy 49
                +l i++ i+lPP++V++ sGc+adl++ni+Lt+lgylPg+iHAfy+ y
  KKY18379.1  8 LLIIIITIFLPPVGVFMVSGCGADLFVNICLTILGYLPGHIHAFYVEY 55
                5789*****************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.43s 00:00:00.95 Elapsed: 00:00:00.55
# Mc/sec: 568.29
//
Query:       KKY18380.1  [L=827]
Description: hypothetical protein UCRPC4_g04997 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (827 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.36s 00:00:01.08 Elapsed: 00:00:00.54
# Mc/sec: 4601.42
//
Query:       KKY18381.1  [L=333]
Description: putative pyruvate dehydrogenase kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.6e-17   61.4   0.1    2.7e-16   59.8   0.1    1.9  2  BCDHK_Adom3  Mitochondrial branched-chain alpha-ketoacid dehy
    1.9e-06   28.3   0.0    7.3e-06   26.5   0.0    1.9  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
  ------ inclusion threshold ------
      0.092   12.6   0.1       0.19   11.6   0.1    1.5  1  Qua1         Qua1 domain
       0.13   12.5   1.0       0.23   11.7   1.0    1.4  1  TIL          Trypsin Inhibitor like cysteine rich domain


Domain annotation for each model (and alignments):
>> BCDHK_Adom3  Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.1   6.1e-20   2.7e-16      41     131 ..       1      88 [.       1     114 [. 0.89
   2 ?   -2.5   0.0      0.87   3.9e+03      67     100 ..     236     271 ..     222     273 .. 0.58

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 6.1e-20
  BCDHK_Adom3  41 lenlPdglvenpsvkkvkdwYaqsfeellelpkp.eleenekftelLekikkrHddvvttlaqGvlelkekrkrkqidseiqsFLdrfymsR 131
                  +++lP+ +v+np+  +v+++Y+++fe++++ ++  ++++nek+++++++++k+H  v++ la Gvle+++        + +++F++ ++++ 
   KKY18381.1   1 MQRLPYVVVTNPHLTHVYELYYKAFETFRKQKEIkTIDDNEKYCRVVSDMLKEHLIVIPNLALGVLECQHL----VAPELMDTFMNGMLRAH 88 
                  689****************************99967*********************************77....56677889998888765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.87
  BCDHK_Adom3  67 ellelpkp.e.leenekftelLekikkrHddvvttl 100
                  ++++++k  +    ne++   L+ +++++dd ++tl
   KKY18381.1 236 RMTNWQKVpSmAATNEELMVNLKGTQNKRDDSLSTL 271
                  455555543235556777777777777777777776 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.6e-09   7.3e-06       5     106 ..     164     312 ..     161     317 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.6e-09
                 HHHHHHHHHHHHHHHH........HSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT..................................GTCSTT CS
   HATPase_c   5 rLrqiisnlvdNavkf........atkageieveikaseddlvisveDnGiGipkedlk..................................klfekf 61 
                 +L+ ii +l+ N+v++        +t+ + i+v i    +++ i+++D G Gip+++++                                  +   k 
  KKY18381.1 164 QLEYIIGELLRNSVQAlmakyeasKTEPPPIDVLICEAPQHVIIRISDQGGGIPRDIVPylwsftkgprrgtrmtnwqkvpsmaatneelmvnL---KG 259
                 7999************999888665577788887774337*********************999999999999999999999998888754441...33 PP

                 CH........HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEEEE CS
   HATPase_c  62 sq........ddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttftf 106
                 +q          s++    + G+Gl +++ ++e + G ++++s +g+G +  +
  KKY18381.1 260 TQnkrddslsTLSSRPPDLRLGMGLPMSRVYAEYWAGALELHSLEGHGVDAFL 312
                 33444333322333333678899999999999999999999999988876555 PP

>> Qua1  Qua1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   4.2e-05      0.19      14      49 ..      11      48 ..      10      50 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.2e-05
        Qua1 14 dPsfthamqLlsaEIekiqkgeskkd..eeekYlDlfs 49
                 P +th+ +L  +  e + k+++ k   ++ekY  ++s
  KKY18381.1 11 NPHLTHVYELYYKAFETFRKQKEIKTidDNEKYCRVVS 48
                599***************9999988666*****99998 PP

>> TIL  Trypsin Inhibitor like cysteine rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.0   5.2e-05      0.23       1      28 [.     118     144 ..     118     149 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.2e-05
                 --TTEEEEEEE-TT---SS-S----.SS CS
         TIL   1 CpeneeyseCgsaCeptCdnlekkeeCe 28 
                 C+++e++++Cg+a ++ C+++e ++ C+
  KKY18381.1 118 CKAKEVIEDCGKAAQDLCRHIEGNK-CP 144
                 9*********************986.86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.32s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2223.48
//
Query:       KKY18382.1  [L=499]
Description: putative phosphotransferase enzyme family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-16   59.8   0.1    2.8e-15   56.9   0.0    2.3  2  APH              Phosphotransferase enzyme family
     0.0014   17.5   0.0       0.39    9.5   0.0    2.1  2  DUF1679          Protein of unknown function (DUF1679)
  ------ inclusion threshold ------
       0.07   12.4   0.0       0.13   11.6   0.0    1.4  1  EcKinase         Ecdysteroid kinase
       0.09   12.0   0.1       0.21   10.8   0.0    1.6  2  Fructosamin_kin  Fructosamine kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   6.2e-19   2.8e-15       2     196 ..      18     285 ..      17     291 .. 0.70
   2 ?   -2.0   0.1       0.6   2.7e+03      93     104 ..     458     469 ..     408     496 .. 0.53

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 6.2e-19
                 EEEE--.SSCEEEEEEETT-.-EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-.B--B-CTTB..S-EEETTEEEEEEE----EE-SS...HHHHHHH CS
         APH   2 vrelsggasnrtylvttpag.ryvlrrnppa..raaeeirrevallrlLakagv.pvPevlagd..tddeeigllfalieyvpgrsllr...klsaaql 91 
                 v  l+ g+ n+ +lv   +g ++v+++++p   r + ++++e+a ++++++  + p+P+vla++  t +  +g +++++e   g  l+r   +l ++ +
  KKY18382.1  18 VSKLPEGNFNKAFLVAMQDGsEVVVKIPNPNsgRRHYTTASEAATMTYVREELKiPAPKVLAYCsrTEESKLGAEYLVMEKASGIELSRvwdTLKPRKK 116
                 5679999**********9*55*********999*****************66556********96566666666*****************9999**** PP

                 HHHHHHHHHHHCCHHCH..-STTTB-..........................SHHCHTCCHH.................HHHHCHHHCCCGCCTCCHHH CS
         APH  92 pellealgeflaalhqvd.paalpla..........................dflaqdlell.................rqlesatarllaselldlle 146
                   ++ +l++f  +l +++ p+   l                           +        +                 +                   
  KKY18382.1 117 IGIVKQLASFTSRLGNTRfPRLGSLYyredikdlekfqidgrfaigptaarsW--------FdnrrgevetsrgpwetcI------------------- 188
                 **************999844444444333333333333333333333333330........0333333333333333332................... PP

                 HHHHH...........................................HHHHHHHH--S.......SS-EEEE-SS-SGGGEEEC...TTEEEEE---T CS
         APH 147 eleeq...........................................vlaalaallpg.......elptvllHgDlhpgNllvd.pddgrvtGviDfe 194
                     +                                           vl+  ++ +p          + v +H+Dlh gN+ vd  d+  +t +iD++
  KKY18382.1 189 ----ElmdavvqrellcvkqfpnfprdrqqgifngpggyrptkqakisVLQDYLKIAPYilpeneeLRSGVMWHNDLHVGNIFVDeTDNSTITSIIDWQ 283
                 ....03333333333333333444444446788888888888888777555555555556777888899999*************9999999******9 PP

                 T- CS
         APH 195 da 196
                  +
  KKY18382.1 284 SV 285
                 76 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.6
                 HHHHHHHHHHCC CS
         APH  93 ellealgeflaa 104
                 e++e +   l++
  KKY18382.1 458 EQYESMLHRLKQ 469
                 333333222222 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0012       5.5     128     186 ..      69     128 ..      57     134 .. 0.88
   2 !    9.5   0.0   8.7e-05      0.39     269     302 ..     255     286 ..     246     290 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0012
     DUF1679 128 heeilltkvyflkkfdeenklkg.yiimeyvedihtlsmyenikadelipvlkaiAtlqa 186
                 + +i+ +kv+++ + +ee+kl + y++me  ++i+   + +++k+   i ++k +A++  
  KKY18382.1  69 ELKIPAPKVLAYCSRTEESKLGAeYLVMEKASGIELSRVWDTLKPRKKIGIVKQLASFTS 128
                 4589**************999876*********************************975 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 8.7e-05
     DUF1679 269 vlvhgDlwsaNiLfseeeegklklkkviDyQlvs 302
                 v+ h Dl   Ni+  e ++ + +++ +iD+Q v 
  KKY18382.1 255 VMWHNDLHVGNIFVDE-TD-NSTITSIIDWQSVP 286
                 899*********9988.33.6899*******986 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.8e-05      0.13     202     248 ..     241     285 ..     188     292 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.8e-05
    EcKinase 202 rllelveekeeefnvlnHGDlwvnNimfkydeegepedvilvDFQls 248
                     l e++e +  v+ H+Dl+v Ni +  ++++  + + ++D+Q +
  KKY18382.1 241 APYILPENEELRSGVMWHNDLHVGNIFVDETDNS--TITSIIDWQSV 285
                 44444446677778**************777776..566789***76 PP

>> Fructosamin_kin  Fructosamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.6e-05      0.21      13      97 ..       9      97 ..       2     112 .. 0.82
   2 ?   -3.6   0.1       1.1   4.9e+03     189     208 ..     255     274 ..     246     278 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.6e-05
  Fructosamin_kin 13 lgkafeiteaekveggeineaylls.eeeqrfFvklne.kealemFe..aEaesLealaetqtirvPkvlavGelkdasfLvleyLelk 97
                     +g+++  t+ +k+  g+ n+a+l+  ++ +++ vk+ + ++ +  ++  +Ea+ ++ ++e  +i  Pkvla+ + +++s L  eyL ++
       KKY18382.1  9 VGSNTIATNVSKLPEGNFNKAFLVAmQDGSEVVVKIPNpNSGRRHYTtaSEAATMTYVREELKIPAPKVLAYCSRTEESKLGAEYLVME 97
                     5677778899999*********998677899****977577777775227*****************************8888888776 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.1
  Fructosamin_kin 189 sllHGdLWsgNaaltkdgep 208
                      ++ H dL  gN+ ++++++ 
       KKY18382.1 255 VMWHNDLHVGNIFVDETDNS 274
                      67799******999888654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 2978.43
//
Query:       KKY18383.1  [L=1134]
Description: putative ubiquitin c-terminal hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-87  290.6   0.0    8.9e-86  287.1   0.0    2.3  2  USP7_ICP0_bdg  ICP0-binding domain of Ubiquitin-specific prot
    3.5e-75  252.2   1.8    3.6e-74  248.9   0.1    3.1  4  USP7_C2        Ubiquitin-specific protease C-terminal
    3.3e-49  167.7   1.0    3.3e-49  167.7   1.0    1.6  2  UCH            Ubiquitin carboxyl-terminal hydrolase
    1.3e-21   77.6   0.2    3.5e-21   76.1   0.2    1.7  1  UCH_1          Ubiquitin carboxyl-terminal hydrolase
    0.00078   19.2   0.4        0.2   11.5   0.0    3.6  3  Rad60-SLD      Ubiquitin-2 like Rad60 SUMO-like
  ------ inclusion threshold ------
       0.01   16.5   0.0         11    6.8   0.0    2.8  2  YukD           WXG100 protein secretion system (Wss), protein
      0.031   14.0   1.4         20    5.0   0.0    4.5  5  ubiquitin      Ubiquitin family
       0.11   12.1   0.2         22    4.7   0.0    2.7  3  PAS_12         UPF0242 C-terminal PAS-like domain
       0.15   12.6   0.2         10    6.7   0.0    3.6  4  UN_NPL4        Nuclear pore localisation protein NPL4
       0.38   10.2   2.0       0.65    9.4   0.2    2.1  2  Peptidase_C98  Ubiquitin-specific peptidase-like, SUMO isopep


Domain annotation for each model (and alignments):
>> USP7_ICP0_bdg  ICP0-binding domain of Ubiquitin-specific protease 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.1   0.0     5e-89   8.9e-86       1     238 [.     657     902 ..     657     904 .. 0.94
   2 ?    0.7   0.0      0.15   2.8e+02      81     114 ..     953     988 ..     949    1002 .. 0.86

  Alignments for each domain:
  == domain 1  score: 287.1 bits;  conditional E-value: 5e-89
  USP7_ICP0_bdg   1 vRlWvmvnrqnkTvRpdqpledeeesktveelreklaskqaelrlylEvle.de......lppvkkeddillFlKlfdpekqtLsyvghvyvskes 89 
                    vR+WvmvnrqnkT+Rpdqpl d ++  t++e+ +++ +k  ++rl++E+ + +e       + + ++ +il+ +K+fd+++qtL++vgh+yv+k++
     KKY18383.1 657 VRFWVMVNRQNKTIRPDQPLRDPNM--TLDEAWSRYGNKGGPFRLWAELGQpQEdgksgwPEATPTSVPILILIKYFDVKAQTLTGVGHIYVKKHA 750
                    7************************..**********************9952256688855667899**************************** PP

  USP7_ICP0_bdg  90 kvsdlvpeineraglpsdtelllyEEikpnmieilklkqtlkkaelqdGdIicfqkelse.e.ekdelpdakeyydfllnrveVtFkpk.ekpkde 182
                    kvsd++++i++ +g++++t+++l+EEik+ mie++k+kqt++++e+qdGdIic q+++ + + +++ ++da++yyd+llnr+ + F  + ++ ++ 
     KKY18383.1 751 KVSDMASQILDLMGWAPGTQFQLFEEIKSAMIEPMKPKQTFQQSEIQDGDIICLQQTIPDlDpSTTICTDARQYYDYLLNRIPIVFVTRpTETDEG 846
                    ***********************************************************98679999**********************5555589 PP

  USP7_ICP0_bdg 183 eftleLskkmtYdqlaekvaekLkvdptklrfttvnaasgkpkapikrsnqetlkd 238
                    eftl+LskkmtYdq+++kv+e+Lkvdpt++rf t n+++gkpk+ +kr+n++tl++
     KKY18383.1 847 EFTLVLSKKMTYDQFSAKVGEHLKVDPTHIRFATINSSTGKPKTWVKRNNNQTLQQ 902
                    ************************************************9988**98 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.15
  USP7_ICP0_bdg  81 ghvyvskeskvsdlvpeineragl..psdtelllyE 114
                    ++++v+k+ +++d+++ ++++++l  +  +++++yE
     KKY18383.1 953 TELLVPKTGTIADILDALQKKLNLsdEDAQKVRIYE 988
                    67899*******************766668999999 PP

>> USP7_C2  Ubiquitin-specific protease C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       5.7     1e+04      47      74 ..     641     665 ..     631     677 .. 0.50
   2 ?   -1.6   0.0         1   1.8e+03      37      74 ..     744     779 ..     741     810 .. 0.64
   3 ?    0.7   0.0       0.2   3.6e+02      25      73 ..     838     883 ..     829     905 .. 0.78
   4 !  248.9   0.1     2e-77   3.6e-74       2     206 .]     920    1122 ..     919    1122 .. 0.99

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 5.7
     USP7_C2  47 dlleelqkkvklseeeskklrllevsnh 74 
                 ++ e+++++ +l   +++++r++ + n 
  KKY18383.1 641 EFEEKIAEEEGL---STQQVRFWVMVNR 665
                 333333333333...3456666655444 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1
     USP7_C2  37 llvpkngtvkdlleelqkkvklseeeskklrllevsnh 74 
                 ++v+k+++v+d+  ++ + ++      +++ l+e  ++
  KKY18383.1 744 IYVKKHAKVSDMASQILDLMGWAPG--TQFQLFEEIKS 779
                 7888888888888888776655433..44444444444 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.2
     USP7_C2  25 lseklkkeeelellvpkngtvkdlleelqkkvklseeeskklrllevsn 73 
                 + ++ ++e e++l ++k+ t +++ +++ +++k++     ++r+ ++++
  KKY18383.1 838 TRPTETDEGEFTLVLSKKMTYDQFSAKVGEHLKVDPT---HIRFATINS 883
                 4455677889**********************99755...788777744 PP

  == domain 4  score: 248.9 bits;  conditional E-value: 2e-77
     USP7_C2    2 lyYevLsislkElEnkksikvtwlseklkkeeelellvpkngtvkdlleelqkkvklseeeskklrllevsnhkiqkvlkedealeslndsttlrae 98  
                  lyYevL+ sl+E+E kk+ikvtwl+e+++kee  ellvpk+gt++d+l++lqkk++ls+e+ +k+r++e + ++i+k+l +d+a++ +nd++tl+ae
  KKY18383.1  920 LYYEVLDTSLSEFEMKKPIKVTWLTEGISKEEITELLVPKTGTIADILDALQKKLNLSDEDAQKVRIYEGHGGRIYKELLDDSAVSAINDYVTLYAE 1016
                  9************************************************************************************************ PP

     USP7_C2   99 eipedeleleedekliqvfhFskepskthGiPFlfklkegEtfsetkeRlqkrlgvkdkeFekiKfalvtrsky.kpeyledddlvlldllskeddl 194 
                  + pe+el++ e+++ ++++hF+kep k++G+PF+f lk+gE+f+etkeR+ kr+g+k+k++ekiKfa+v ++ y kp+yleddd + +dl++++d+ 
  KKY18383.1 1017 KTPEEELNAGENDHAVHCIHFDKEPGKPYGVPFKFILKPGEPFKETKERIGKRTGIKGKNLEKIKFAIVGKALYsKPRYLEDDD-IVYDLITDTDH- 1111
                  *************************************************************************99*********.*******9887. PP

     USP7_C2  195 dlLgLdHpdksr 206 
                    LgLdH++k+r
  KKY18383.1 1112 -NLGLDHVNKTR 1122
                  .9********96 PP

>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.7   1.0   1.9e-52   3.3e-49       1     257 []     230     550 ..     230     550 .. 0.90
   2 ?   -2.5   0.0       1.6   2.8e+03      76      76 ..     626     626 ..     557     902 .. 0.51

  Alignments for each domain:
  == domain 1  score: 167.7 bits;  conditional E-value: 1.9e-52
                 -EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHHSH-CCEE--HHHHHHHHHHSGGGTSSSTCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH   1 tGlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkellkskskavsPkklkktlsklaksfsgykqqD 99 
                 +Gl+N G+tCy+ns+lQ+L+ ++ +r+  +++ ++++  +++               a  l++lf++l+ ++++avs+ +l++++++ +++  +++qqD
  KKY18383.1 230 VGLKNQGATCYLNSLLQSLYFTNAFRKATYQIPTENEALKTN--------------SAWTLQRLFYNLQ-KNQTAVSTAELTASFGWDSRQ--IFEQQD 311
                 69*****************************65444444433..............5889*********.58*******************..89**** PP

                 HHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCTTSHHHHHH-EEEEE..................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................... RF
         UCH 100 aqEflaflLdqlhedlnrevaeekwkkhlkrndslitdlfegqlks..................................................... 145
                 +qE+ ++l+++l+e ++            ++ ++   +lf g++k+                                                     
  KKY18383.1 312 VQELSRILMEKLEERMKG-----------TTAENALPHLFVGKMKTyiscvnvdfessrieefwdiqlnvrgnknlhesfmdyiqvetlegenkydags 399
                 ******************...........6777888899999999999999999999****************************************** PP

                 .........EEEEEEB-SEEEEEEESEEETEE...EEE--SEEB--SEEE-GGGBSS-BTTS-TCS-BEEEEEEEEEESCTTSEEEEEEEECTTTTEEE CS
                 .........xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH 146 .........klklkrlPeiLiihlkRfsynss...ksKlntkvefpeeldlssylaeekkkkteekkkYeLiavvvHsGslssGHYvayiknekngkWy 232
                           + ++++P++L+++lkRf+y+ +     K n++ efpee d+s+yl+e+++k+  e+++Y+L++v++HsG  + GHY+a+ k +k+g Wy
  KKY18383.1 400 pyglqdakkGVIFESFPPVLHLQLKRFEYDINrdaMMKVNDRHEFPEEFDASPYLSEDADKS--ESWTYQLHGVLIHSGDFNAGHYYAFLKPTKDGHWY 496
                 ********99*******************6666699********************888876..78********************************* PP

                 EEETTEEEEE-HH............................CCCTT....CEEEEEE CS
                 xxxxxxxxxxxxx............................xxxxx....xxxxxxx RF
         UCH 233 kydDetvkevkee............................eevls....sayiLfY 257
                 k+dD++v++ + +                            +   +    +ay+L+Y
  KKY18383.1 497 KFDDDRVTRATIKetleenyggeypnlpnglgqrqpymrgyS---TkrsmNAYMLVY 550
                 *********997777888888888888888877777766642...133479999998 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.6
                 E CS
                 x RF
         UCH  76 v 76 
                  
  KKY18383.1 626 A 626
                 0 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.2   1.9e-24   3.5e-21       1     318 [.     230     501 ..     230     503 .. 0.83

  Alignments for each domain:
  == domain 1  score: 76.1 bits;  conditional E-value: 1.9e-24
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   1 sGLEnhivnsYlNslLQvlyfipplrnlalshlakeckkehcLlcElgflfdmldkakglncqasnFlralssipeasalglileeeeetekssaisls 99 
                 +GL n+ +++YlNslLQ lyf+  +r++  +  +++ + +   +  l+ lf+ l+k + + + + +++ +++    +++ ++++++  +          
  KKY18383.1 230 VGLKNQGATCYLNSLLQSLYFTNAFRKATYQIPTENEALKTNSAWTLQRLFYNLQKNQ-TAVSTAELTASFG----WDSRQIFEQQ--D---------- 311
                 8*************************88888877888888888999*********987.7899999*****9....6677887332..2.......... PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 100 sliqsfnrflldqlekelketkknsseeesaieqllgtkaettirclkCgseksrksstlvldlkyPkpsnekkeakvtfasilksslerekttrawCe 198
                   +q++ r+l+++le+  k t+     +e+a+  l+  k++t i+c +   e+sr + +  ++l+       +k+ + +f ++++    +  ++++  +
  KKY18383.1 312 --VQELSRILMEKLEERMKGTT-----AENALPHLFVGKMKTYISCVNVDFESSRIEEFWDIQLNV----RGNKNLHESFMDYIQVETLE-GENKYDAG 398
                 ..689************99976.....789999*******************************44....45677889999999987766.78888889 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 199 kCkryqpteqrktvknlPpvLalnakle.eeeelelwkt...knwlpleiklsldedknleeklkeerekakaekeikvYeLqsvvvhigdskesghLv 293
                 +    q  +++  ++++PpvL l++k++  + +++ +++   ++ +p+e+++s          l e+++    ++e+ +Y+L++v +h gd + +gh++
  KKY18383.1 399 SPYGLQDAKKGVIFESFPPVLHLQLKRFeYDINRDAMMKvndRHEFPEEFDAS--------PYLSEDAD----KSESWTYQLHGVLIHSGDFN-AGHYY 484
                 99999*********************994443333333333368899999983........33334444....7799*************766.***** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 294 slvkvaekelerdppesqWylFNDf 318
                 ++ k   +     +++++Wy+F+D 
  KKY18383.1 485 AFLK---P-----TKDGHWYKFDDD 501
                 ****...2.....34579******5 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.7   6.6e+03      19      44 ..     635     659 ..     631     660 .. 0.81
   2 !   11.5   0.0   0.00011       0.2      14      68 ..     743     802 ..     733     805 .. 0.86
   3 ?    3.2   0.0     0.045        80      15      43 ..     955     985 ..     948     989 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.7
                 TTSBHHHHHHHHHHHHT----TT-EE CS
   Rad60-SLD  19 ptttvskLieayrkkkgipeeqkvrL 44 
                 + +++s+  e+ ++++g++  q+vr+
  KKY18383.1 635 RAMKISEFEEKIAEEEGLST-QQVRF 659
                 66788888899999999999.99997 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00011
                 EEEEETTSBHHHHHHHHHHHHT----TT-EEEETT......EE--TTSBGGGSS--TTEEE CS
   Rad60-SLD  14 kikVkptttvskLieayrkkkgipeeqkvrLiFDG......eeLdpnstvedldiedgdti 68 
                 +i Vk++ +vs+++++  + +g  + ++++L F+       e+++p++t+++ +i+dgd+i
  KKY18383.1 743 HIYVKKHAKVSDMASQILDLMGWAPGTQFQL-FEEiksamiEPMKPKQTFQQSEIQDGDII 802
                 6899999999999999999999999999997.77666666689****************98 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.045
                 EEEETTSBHHHHHHHHHHHHT----..TT-E CS
   Rad60-SLD  15 ikVkptttvskLieayrkkkgipee..qkvr 43 
                 + V +t t+ ++++a++kk +++ e  qkvr
  KKY18383.1 955 LLVPKTGTIADILDALQKKLNLSDEdaQKVR 985
                 5689999****************99666666 PP

>> YukD  WXG100 protein secretion system (Wss), protein YukD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0059        11      55      76 .]     783     804 ..     748     804 .. 0.81
   2 ?    6.5   0.0    0.0076        14      10      42 ..     950     981 ..     938     989 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0059
                 EEEETTSBCGGGT--TT-EEEE CS
        YukD  55 apLsgdrtLaeagVrDGdlLvL 76 
                 +p+++++t ++ +++DGd+++L
  KKY18383.1 783 EPMKPKQTFQQSEIQDGDIICL 804
                 799****************987 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0076
                 TTEEEEEEETTSBTTHHHHHHHHHS-...--S- CS
        YukD  10 nrrvDlaLPadvpvaellpalvrllgepddeag 42 
                 +  ++l +P + ++a++l+al++ l+  +de++
  KKY18383.1 950 EEITELLVPKTGTIADILDALQKKLN-LSDEDA 981
                 5689*********************9.333332 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.011        20      19      41 ..     637     659 ..     630     684 .. 0.77
   2 ?    1.2   0.0      0.17   3.1e+02      47      67 ..     784     804 ..     783     807 .. 0.89
   3 ?    0.6   0.0      0.27   4.8e+02       7      41 ..     844     878 ..     835     879 .. 0.86
   4 ?   -3.7   0.1         6   1.1e+04      12      38 ..     954     981 ..     949     989 .. 0.70
   5 ?    1.1   0.0      0.19   3.3e+02      15      39 ..    1053    1077 ..    1041    1091 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.011
                 SBHHHHHHHHHHHHTSSGGGEEE CS
   ubiquitin  19 dtveelKekiaekegipaeqqrL 41 
                  +++e+ ekiae+eg+ ++q r+
  KKY18383.1 637 MKISEFEEKIAEEEGLSTQQVRF 659
                 579***************99987 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.17
                 EE-TTSBHGGHTTSTTEEEEE CS
   ubiquitin  47 vLedertleeygiqdgstlhl 67 
                 +++ ++t ++  iqdg++++l
  KKY18383.1 784 PMKPKQTFQQSEIQDGDIICL 804
                 68889**************98 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.27
                 TSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEE CS
   ubiquitin   7 dgkkitleveesdtveelKekiaekegipaeqqrL 41 
                 d  ++tl ++++ t++++ +k+ e+ ++ + ++r+
  KKY18383.1 844 DEGEFTLVLSKKMTYDQFSAKVGEHLKVDPTHIRF 878
                 45589***********************9999986 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 6
                 EEEEETTSBHHHHHHHHHHHHT.SSGGG CS
   ubiquitin  12 tleveesdtveelKekiaekeg.ipaeq 38 
                 +l v+++ t++++ +++++k +    + 
  KKY18383.1 954 ELLVPKTGTIADILDALQKKLNlSDEDA 981
                 6678899999999999998876444444 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.19
                  EETTSBHHHHHHHHHHHHTSSGGGE CS
   ubiquitin   15 veesdtveelKekiaekegipaeqq 39  
                  +++ +  +e Ke+i +++gi  +++
  KKY18383.1 1053 LKPGEPFKETKERIGKRTGIKGKNL 1077
                  67889999***********987665 PP

>> PAS_12  UPF0242 C-terminal PAS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.4   6.1e+03      38      57 ..     270     289 ..     252     313 .. 0.76
   2 ?    4.7   0.0     0.012        22     112     146 ..     576     610 ..     558     611 .. 0.90
   3 ?    4.2   0.0     0.017        30      59      94 ..     742     777 ..     725     794 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.4
      PAS_12  38 dnyaldlRrLfDsLrsEnlg 57 
                  n+a  l rLf +L++ +++
  KKY18383.1 270 TNSAWTLQRLFYNLQKNQTA 289
                 56677777888887776654 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.012
      PAS_12 112 kteskirlvlKtKagqevllncllgiipsGiFrnh 146
                  +e+k++l+ K K+ +e  l+  + +i    F+nh
  KKY18383.1 576 LNEEKAELERKRKEREEAHLYLNVHVISDKTFKNH 610
                 5899*************************999997 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.017
      PAS_12  59 ilvysqkenkllfaNaqirallGwssdkflqdfsei 94 
                   +y +k  k+  + +qi +l+Gw++ +  q f+ei
  KKY18383.1 742 GHIYVKKHAKVSDMASQILDLMGWAPGTQFQLFEEI 777
                 569*************************99999998 PP

>> UN_NPL4  Nuclear pore localisation protein NPL4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.1     2e+03      26      51 ..     639     666 ..     633     671 .. 0.70
   2 ?    6.7   0.0    0.0057        10      10      79 ..     736     806 ..     733     807 .. 0.84
   3 ?   -0.6   0.0       1.1   1.9e+03      18      40 ..     850     872 ..     843     883 .. 0.84
   4 ?   -0.9   0.0       1.4   2.4e+03      12      43 ..     949     981 ..     946     997 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHSS-STTT..-EEESSTT CS
     UN_NPL4  26 lktllekvaeelkfseng..fslylern 51 
                 ++++ ek+aee ++s ++  f +  +r+
  KKY18383.1 639 ISEFEEKIAEEEGLSTQQvrFWVMVNRQ 666
                 789*******998888861144555554 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0057
                 EETTEEEEEEE-TTSBHHHHHHHHHHHSS-STT.T-EEESSTTCGCCCSSSSSSCCCTCH--TT-EEEEEX CS
     UN_NPL4  10 qSadGikRieisekstlktllekvaeelkfsen.gfslylernkttelvssssksvkevglkhGdmlyLkk 79 
                 q   G+  i ++++  ++++ +++ + ++     +f+l+ e +         +++ ++++++ Gd++ L++
  KKY18383.1 736 QTLTGVGHIYVKKHAKVSDMASQILDLMGWAPGtQFQLFEEIKSAMIEPMKPKQTFQQSEIQDGDIICLQQ 806
                 566799999999***************9987655*****998665544457899***************98 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.1
                 EEE-TTSBHHHHHHHHHHHSS-S CS
     UN_NPL4  18 ieisekstlktllekvaeelkfs 40 
                 + +s+k t  ++  kv e+lk++
  KKY18383.1 850 LVLSKKMTYDQFSAKVGEHLKVD 872
                 668999***************97 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.4
                 TTEEEEEEE-TTSBHHHHHHHHHHHSS-STT.T CS
     UN_NPL4  12 adGikRieisekstlktllekvaeelkfsen.g 43 
                 ++ i  + ++++ t++++l+  +++l++s++  
  KKY18383.1 949 KEEITELLVPKTGTIADILDALQKKLNLSDEdA 981
                 5556667789999*************9998844 PP

>> Peptidase_C98  Ubiquitin-specific peptidase-like, SUMO isopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2   0.00036      0.65       5      75 ..     233     307 ..     229     355 .. 0.67
   2 ?   -0.7   0.1      0.44   7.9e+02     216     256 ..     465     508 ..     458     514 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00036
  Peptidase_C98   5 knkenlCWLDsllvalvhletlkkalseleseeesl.......vkrlltkyeqaqallketqkkkakeevvkvpsdvl 75 
                    kn+ + C+L+sll  l ++++++ka+ +  +e+e+l       ++rl+ + ++ q+++++++ +    ++   +++++
     KKY18383.1 233 KNQGATCYLNSLLQSLYFTNAFRKATYQIPTENEALktnsawtLQRLFYNLQKNQTAVSTAELT---ASFGWDSRQIF 307
                    89***********************998888888876666444555555555555555555444...23333333333 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.44
  Peptidase_C98 216 qYsvtaviqY..kkelkHFvtwirn.sdgsWlecDDLkgpvckt 256
                    +Y++  v+    + +  H+ ++++  +dg+W ++DD + + ++ 
     KKY18383.1 465 TYQLHGVLIHsgDFNAGHYYAFLKPtKDGHWYKFDDDRVTRATI 508
                    566666655522445679999998515778******77665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.53
# Mc/sec: 6483.15
//
Query:       KKY18384.1  [L=630]
Description: hypothetical protein UCRPC4_g05001 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-90  303.5   0.0    2.9e-90  303.1   0.0    1.2  1  HAT_KAT11  Histone acetylation protein


Domain annotation for each model (and alignments):
>> HAT_KAT11  Histone acetylation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.1   0.0   1.6e-94   2.9e-90       1     290 [.       7     333 ..       7     393 .. 0.87

  Alignments for each domain:
  == domain 1  score: 303.1 bits;  conditional E-value: 1.6e-94
   HAT_KAT11   1 LnelLakvlpkdekfkirhlsskpkevealivakkkeaeskpektykekhflalsendd.....keviifglevlvYitvfdeanerliFVSkaDstgy 94 
                 L + La+ lp++ kfk +h+++k +++ al+++++++    +e t + k +l++  ++       +vi f++ev++Y+     ++ ++iFVSkaDstgy
  KKY18384.1   7 LSSSLASILPAAFKFKSFHVATKATSSPALFSPEPGA---PEEPTECVKNLLSVTVSAAkesddDDVIAFAVEVYIYTA----PHLTTIFVSKADSTGY 98 
                 6789********************************9...88999*******9877666566669**************....**************** PP

   HAT_KAT11  95 lkll......kvkvadivetllsylisikqreylrkvklsLFtraqdqYLFPnssknpkKHvLddkgLlkWWikvldkilr.............esaks 174
                 l+ll       + ++ +++++l+yli++++++  r v lsLF+r+q+qYLFP+s++   KHvLdd++L+kWW++++d+ilr             e+++s
  KKY18384.1  99 LSLLklpkgtPSIIRGVTSAFLQYLINTQPQDK-RIV-LSLFARSQNQYLFPGSIEVADKHVLDDRQLIKWWCRTVDPILRsfkdregqsstpeECETS 195
                 ****9****99****************998875.445.7******************************************************877777 PP

   HAT_KAT11 175 satkaklvipGkdkletrkfipataksdn.....Wlvghileeisddk.......avyeiPlFpDDPKgrfleelieE............grlksv.sl 248
                  + +a++v+pG+dk+etr+f+p++ ++d+     W ++h+l   +  +       +++ +P+FpDDPK+rfl++l++E            g+++s+ sl
  KKY18384.1 196 LTSSAYVVVPGCDKYETRTFFPPSSRNDSpskprWHATHPLYLLARIQdpksappPRCLVPRFPDDPKSRFLDDLDDEirlpdsievgneGKWRSIrSL 294
                 7789********************99887999********977665444457888******************************************** PP

   HAT_KAT11 249 dqfweelafrqEfslgrlvgfigleveetveeddvikp.kklv 290
                 +qfwe++++rqE+s+grlvgf+++      e+++vi++ + +v
  KKY18384.1 295 EQFWEMMSYRQECSAGRLVGFVWVV----LERQKVITNdSTTV 333
                 ************************4....34444444412222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 3968.52
//
Query:       KKY18385.1  [L=278]
Description: putative alkaline phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1951.92
//
Query:       KKY18386.1  [L=200]
Description: hypothetical protein UCRPC4_g05003 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-16   60.4   0.0    3.5e-16   59.9   0.0    1.2  1  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0   1.9e-20   3.5e-16       2     153 ..       6     162 ..       5     168 .. 0.89

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 1.9e-20
  Isochorismatase   2 alvviDmqndfv..eegvkeseeisavveninkllkaarkagipviftrdvheleevkgdlderkaaphfkpgttgaelvpelaple....... 86 
                      +l+viD+q+ f+   +g   +++++++ ++i  +l +ark  i+vif+r++++             +p f+p+t+ +e+   l p +       
       KKY18386.1   6 ILLVIDVQQSFFedINGSTTVPDAEGLKQRILSVLSKARKEQIKVIFIRHSDP------------PDPNFTPDTPAWEIASFLSPPPssttsss 87 
                      79**********88889999*********************************............89999999999999999998877777777 PP

  Isochorismatase  87 ..gdvvvdKtrfsafagtdldeiLke....lgiktivlaGiatdvCVeatardaldl..GyevvvvsDAvaalsp 153
                         ++++dKt+ +af +t+l+ ++ +    +   +i   G+ td+CV+at + a +   + ev +v+ A +++++
       KKY18386.1  88 snPEPIIDKTKRNAFVSTSLESLITSflrpSSNPQITCIGLQTDFCVRATSLGAKEVfpNAEVRLVRGAHGTYNA 162
                      8889******************999964333335********************886558999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.32s 00:00:00.87 Elapsed: 00:00:00.54
# Mc/sec: 1114.49
//
Query:       KKY18387.1  [L=315]
Description: putative 3-hydroxyisobutyrate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-29  100.1   0.0    1.9e-28   99.2   0.0    1.5  1  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut
    3.4e-26   92.3   0.1      5e-26   91.7   0.1    1.2  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    2.6e-05   24.7   0.1    7.4e-05   23.3   0.1    1.8  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    5.5e-05   22.6   0.0    0.00011   21.7   0.0    1.5  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
     0.0025   17.4   0.1     0.0041   16.7   0.1    1.4  1  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
     0.0026   17.6   0.0     0.0062   16.4   0.0    1.5  1  Rossmann-like   Rossmann-like domain
  ------ inclusion threshold ------
      0.063   13.5   0.0       0.14   12.4   0.0    1.5  1  TonB_2          TonB C terminal
       0.14   12.7   0.0        1.9    9.0   0.0    2.3  1  XdhC_C          XdhC Rossmann domain


Domain annotation for each model (and alignments):
>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.0   8.4e-32   1.9e-28       1     121 [.     171     291 ..     171     292 .. 0.99

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 8.4e-32
  NAD_binding_11   1 GaGqavKlvnnlllainlaaasEalvlaekaGldpekvlevinassgrsnalenklpqrvlsrdfdpgFaldlmlKDlglalelareagaplpll 95 
                     GaG+a+K++nn+++a++++a+s+alv ++k+Gldp ++l+v+n ++gr++++++ + +  l+r++++gF+l+l++KD+g++ el ++++++  + 
      KKY18387.1 171 GAGHAMKTLNNYVSAASIVALSDALVSGQKFGLDPIQMLDVLNVGTGRNFSTTDSYRTDALPRKYASGFQLALLIKDVGITKELLEKLQFESDMP 265
                     9********************************************************************************************** PP

  NAD_binding_11  96 alaeqlyaaaaaegggdaDhsaivrl 121
                      l+ + y+ a   +++ aDh++++++
      KKY18387.1 266 DLILKYYKDAFDMLEPMADHTEMLKA 291
                     ***********************997 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.1   2.2e-29     5e-26       1     158 []       5     168 ..       5     168 .. 0.91

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 2.2e-29
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS....HCCC--TT-EEEE-S- CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg.akaaesieelvasldvvitmvkagkavdevieg....llealkkgdilidgst 91 
                    ++g+iGlG+ G+++a+n+ +ag++++v + ++e+ +++++e+  +++++  e +++++v++tm+++gk v  +       +  + ++g+i++d+s+
     KKY18387.1   5 TVGYIGLGKAGASLASNIPRAGFNLIVRDADPEREQAFAQENkNTIVAEGPEGFKDAEVIVTMLPQGKVVSLTFIAnskeITLNRRQGTIIVDTSS 100
                    58*************************************99866677777789999**************976555578899999*********** PP

                    --HHHHHHHHHHHHHTT-EEEEEEEESHH.HHHHHT-EEEEEE.E-HHHHHHHHHHHHHHEEEEEEE-E CS
  NAD_binding_2  92 sspedtrelakelkekglkfldaPVSGGe.egAekGtLsimvG.GseeafervkpvleaigakvthviG 158
                    ssp dtr l ++l+++gl ++d PV+        +G+ ++mvG  s+ea+e+v pvl+a+++ v+ ++G
     KKY18387.1 101 SSPFDTRSLGADLESHGLVLVDSPVTQAHlHDTDTGNATLMVGsNSSEAIEKVMPVLQAMAKYVF-YMG 168
                    **************************998346889********44678**************999.667 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   3.3e-08   7.4e-05       2      94 ..       6      98 ..       5     101 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 3.3e-08
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHH.....HHCGHHHHTTSEEEEE CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveevl.....selakdalkgklvisv 94
                   +g iG G+ g++las++ +ag    +++ + + +pe+ +++a+e + ++ a +  e  ++a+v+v  ++  +v ++      +e++ +  +g++++++
     KKY18387.1  6 VGYIGLGKAGASLASNIPRAG---FNLI-VRDADPEREQAFAQENKNTIVA-EGPEGFKDAEVIVTMLPQGKVVSLTfiansKEITLNRRQGTIIVDT 98
                   899******************...9999.55*************8866666.99***********999988877664222223446666667777766 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   4.8e-08   0.00011      36     144 ..       3     116 ..       1     128 [. 0.82

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 4.8e-08
                   TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH..CHHHHTCEECSHHHHHHH-SEEEE-S--ST..TTTTSBSHHHHHCST.TTEEEEESS CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkee..eeeelgvelvsleellaesDivslhlpltp..etrhlinaeelakmk.kgailiNta 127
                    ktvG iGlG+ G ++a  +   g+++i+ d  +++e+  ++e+++  +++  e ++++++++ +lp  +  + + + n++e+ + + +g i++ t+
    KKY18387.1   3 VKTVGYIGLGKAGASLASNIPRAGFNLIVRDADPEREQafAQENKNTIVAEGPEGFKDAEVIVTMLPQGKvvSLTFIANSKEITLNRrQGTIIVDTS 99 
                   59****************************99999999654445555577*****************877224566778899987651567899999 PP

                   -GGGB-HHHHHHHHHTT CS
  2-Hacid_dh_C 128 RGglvdeeaLleaLksg 144
                     +  d++ L + L+s+
    KKY18387.1 100 SSSPFDTRSLGADLESH 116
                   99999999998888876 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.8e-06    0.0041       4      71 ..       3      71 ..       1      96 [. 0.85

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.8e-06
                TS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHT.T-EEEEHHHHHHT-SEEEE-S-HH CS
        IlvN  4 gkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkee.gfevltvaeavkkadvvmiliPDe 71
                 k++  iG G  G + a n+  +g++++v   + ++  + A+e+ +  v++  e  k+a+v+++++P  
  KKY18387.1  3 VKTVGYIGLGKAGASLASNIPRAGFNLIVRDADPEREQAFAQENkNTIVAEGPEGFKDAEVIVTMLPQG 71
                5899*************************999988888888765156688899*************975 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.8e-06    0.0062      12     106 ..       5     101 ..       2     109 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.8e-06
  Rossmann-like  12 svGiisaGrvGtalgaaleraghvvvgisaisaasreraerrlPdvpvlevedvaaraellllavPdaelpglv...kglaatgavraGtivahts 104
                    +vG i+ G+ G++l+  + rag  ++   a  +  +  a++   ++ v+e ++  + ae+++  +P  ++  l    +    t   r+Gti++ ts
     KKY18387.1   5 TVGYIGLGKAGASLASNIPRAGFNLIVRDADPEREQAFAQE-NKNTIVAEGPEGFKDAEVIVTMLPQGKVVSLTfiaNSKEITLNRRQGTIIVDTS 99 
                    69**********************99888877766666655.468889999*****************9888751113333445679********9 PP

  Rossmann-like 105 ga 106
                    ++
     KKY18387.1 100 SS 101
                    86 PP

>> TonB_2  TonB C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.2e-05      0.14      22      71 ..      55     104 ..      42     118 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.2e-05
      TonB_2  22 isgnleavveitidpdGeivsvrlvksSgneafDkavkrAiekasplPpp 71 
                  +g + a+v++t+ p+G++vs  +   S    +++     i ++s+ +p+
  KKY18387.1  55 PEGFKDAEVIVTMLPQGKVVSLTFIANSKEITLNRRQGTIIVDTSSSSPF 104
                 567789**********************9999988766666665555555 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00084       1.9       4      65 ..       9      68 ..       6     194 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00084
                E--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-TT-SE............-EEEE--S-HHHHHHHHHHHS CS
      XdhC_C  4 fGaghvaqalarlaaalgfrvtvvdpreefatkerfpeade............tavvvlthdhklDaealeaal 65
                +G g+ +++la+   ++gf+++v d+++e  +++ f+++++            +            ae++ ++l
  KKY18387.1  9 IGLGKAGASLASNIPRAGFNLIVRDADPE--REQAFAQENKntivaegpegfkD------------AEVIVTML 68
                699999**********************8..66777766663444444444442............44444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2315.75
//
Query:       KKY18388.1  [L=647]
Description: putative chromatin assembly factor 1 subunit a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-21   76.4   7.4    1.5e-21   76.4   7.4    3.6  2  CAF1A         Chromatin assembly factor 1 subunit A
     0.0064   15.0  31.1     0.0092   14.5  31.1    1.2  1  Borrelia_P83  Borrelia P83/100 protein
  ------ inclusion threshold ------
      0.018   14.8  52.2      0.031   14.0  52.2    1.3  1  CAF-1_p150    Chromatin assembly factor 1 complex p150 subuni
      0.019   14.9  13.8        6.5    6.7  15.5    2.7  2  FAM60A        Protein Family FAM60A
        2.6    7.5  14.5        4.2    6.9  14.5    1.2  1  Exonuc_VII_L  Exonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> CAF1A  Chromatin assembly factor 1 subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -16.7  19.4         5   1.8e+04      75      75 ..     132     132 ..      73     192 .. 0.69
   2 !   76.4   7.4   4.1e-25   1.5e-21       1      73 [.     362     437 ..     362     439 .. 0.82

  Alignments for each domain:
  == domain 1  score: -16.7 bits;  conditional E-value: 5
       CAF1A  75 d 75 
                 +
  KKY18388.1 132 E 132
                 1 PP

  == domain 2  score: 76.4 bits;  conditional E-value: 4.1e-25
       CAF1A   1 KllqFyedvRPpYyGTwtkkskvvg....arnPfskdekeldYdyDSdaEWeeeeeeegedleseedeeeeeeddde 73 
                 K+l F edvRPpY GT+t++ +  +     r+Pfs++ ++++YdyDS+aEWe   +e  edlese+d+ee+e ddd 
  KKY18388.1 362 KVLFFREDVRPPYQGTYTRRVSPKSatklSRRPFSRSLPDTNYDYDSEAEWEP-PQEGDEDLESEDDDEEDEGDDDM 437
                 89****************64333333567**********************54.45455****99999998877764 PP

>> Borrelia_P83  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5  31.1   2.6e-06    0.0092     225     332 ..      82     191 ..      55     253 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.6e-06
  Borrelia_P83 225 kqkdadkakkkadtaednadkqrkevreklqeaknlpepadvsskk....edkkvaeekkreiekaqkeikkkdeeakkakdakaedlkkeskaeek 317
                   +++  + +k+k+ +ae+++++  k  +++ +e  +++e+a+ +++k    e+k+ + e+ +e+ + qkei+k++++  k  +++a+d+++ +++ +k
    KKY18388.1  82 NAQGPASKKRKLTFAEKEVERAVKRQEKEEKERLKAQEKARKEEEKrikdEEKRRK-EEEKEVARRQKEIEKAEKQKVKDAEKAAKDAERQAREGKK 177
                   44445567889999999998776666666666666666665554431111444444.5556777779999999999999999999999999999888 PP

  Borrelia_P83 318 eaedkeleakkeree 332
                   + ++ e+  kk+r +
    KKY18388.1 178 K-KEEEEKQKKQRSQ 191
                   7.3333444444444 PP

>> CAF-1_p150  Chromatin assembly factor 1 complex p150 subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0  52.2   8.6e-06     0.031      12     122 ..      88     193 ..      77     207 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8.6e-06
  CAF-1_p150  12 ekeklklekekerlrkklklerekeekkrlkeekkeekerakeearrkkeeekekkekerrekkekdekekaeklrlkeekrkeklealeakleekrkk 110
                  k+++ +    e++ ++  +++ekeek+rlk ++k      kee++r k+eek +ke e+   + + e ekaek+++k+ ++  k    +a+   k+k 
  KKY18388.1  88 SKKRKLTFA--EKEVERAVKRQEKEEKERLKAQEK----ARKEEEKRIKDEEKRRKEEEKEVARRQKEIEKAEKQKVKDAEKAAKDAERQAREGKKKKE 180
                 333333333..333444455678888888887777....4478889999999999999999999999************99998887677765555555 PP

  CAF-1_p150 111 eeekrlkeee.kr 122
                 eeek+ k+    r
  KKY18388.1 181 EEEKQKKQRSqMR 193
                 5555555433344 PP

>> FAM60A  Protein Family FAM60A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  15.5    0.0018       6.5      89     176 ..     109     198 ..      68     261 .. 0.60
   2 ?    3.8   0.0     0.014        51     126     202 ..     405     478 ..     368     485 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0018
      FAM60A  89 aklkkk.ekkesskkieekfekklkkkkklkktkakasdasssereaspassd.sasedsdesedeeekkrkkllekkkkrsaeklvsfl 176
                 ++ k++ + +e+++k+eek  k  +k++k+++++++  +++ ++ e++ +++  +a++d +++  e +kk+++ +++kk+rs+++l+ f+
  KKY18388.1 109 KEEKERlKAQEKARKEEEKRIKDEEKRRKEEEKEVARRQKEIEKAEKQKVKDAeKAAKDAERQAREGKKKKEEEEKQKKQRSQMRLNAFF 198
                 122222222223333333333333333333333333322222222222222220223333333333333444444455555555555554 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.014
      FAM60A 126 dasssereaspassdsasedsdesedeeekkrkkllekkkkrsaeklvsfldlsylkrekvCCGiifkglsgevlid 202
                 d +s+++ + p++ d+  e++d++e++e     +    +++++++++  +l  +  ++e vC Gi+++g   +++i+
  KKY18388.1 405 DYDSEAEWEPPQEGDEDLESEDDDEEDEGDDDMDG-FLDDENDTATKKGLLGGN--EMEPVCTGIVWEGERENMVIN 478
                 33444444444444443333333333333322222.233334444445555544..5789*********99888886 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  14.5    0.0012       4.2     145     238 ..      89     193 ..      49     217 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0012
  Exonuc_VII_L 145 leeqleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerler.......alkkqlkkkrerleelkerlk....ekleekke 230
                    +++l  +e+++e+a+kr+ +e+k+rl++ +++ k+ e++++++++r +e e+++ r       a k+++k ++++ + ++++ +    +k ee+k+
    KKY18388.1  89 KKRKLTFAEKEVERAVKRQEKEEKERLKAQEKARKEEEKRIKDEEKRRKEEEKEVARrqkeiekAEKQKVKDAEKAAKDAERQARegkkKKEEEEKQ 185
                   2567777777888888888888888887776666566666666655555555555550000000555555555555555554442343222222222 PP

  Exonuc_VII_L 231 rlkklker 238
                   + ++ ++r
    KKY18388.1 186 KKQRSQMR 193
                   22223333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3323  (0.185342); expected 358.6 (0.02)
Passed bias filter:                      939  (0.0523733); expected 358.6 (0.02)
Passed Vit filter:                       397  (0.0221429); expected 17.9 (0.001)
Passed Fwd filter:                        94  (0.0052429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.73u 0.57s 00:00:02.29 Elapsed: 00:00:01.16
# Mc/sec: 1689.99
//
Query:       KKY18389.1  [L=209]
Description: hypothetical protein UCRPC4_g05006 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.47
# Mc/sec: 1349.92
//
Query:       KKY18390.1  [L=1150]
Description: hypothetical protein UCRPC4_g05007 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.48
# Mc/sec: 7162.12
//
Query:       KKY18391.1  [L=543]
Description: putative periodic tryptophan protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-18   65.2   6.3    0.00033   21.4   0.1    5.7  5  WD40         WD domain, G-beta repeat
    2.4e-08   34.2   0.2    0.00074   19.8   0.1    4.5  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    1.5e-07   30.5   5.3      3e-06   26.2   0.6    3.4  4  Nup160       Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.027   15.1   0.9        0.1   13.2   0.9    1.9  1  DUF4398      Domain of unknown function (DUF4398)


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0072        32      21      38 .]     212     229 ..     208     229 .. 0.90
   2 !   14.4   0.0   1.2e-05     0.054      13      38 .]     277     303 ..     270     303 .. 0.74
   3 !   17.8   0.2   9.7e-07    0.0044       1      34 [.     307     342 ..     307     343 .. 0.88
   4 !   21.4   0.1   7.3e-08   0.00033       2      38 .]     397     435 ..     396     435 .. 0.78
   5 ?    4.4   0.0     0.017        77      18      38 .]     459     482 ..     446     482 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0072
                 TSSEEEEEETTSEEEEEE CS
        WD40  21 dgawlasGsdDgtvriWd 38 
                 +g+++a +++D+ + +Wd
  KKY18391.1 212 HGNFVAIATMDPDIEVWD 229
                 6999999999*******9 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.2e-05
                 EEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtsla.fspdgawlasGsdDgtvriWd 38 
                 v +la + ++ ++las+s D+tv++Wd
  KKY18391.1 277 VLALAaNRQHRNLLASASADKTVKLWD 303
                 555554555667799999********9 PP

  == domain 3  score: 17.8 bits;  conditional E-value: 9.7e-07
                 TEEEEEEESSSS.EEEEEEETTSSEEE.EEETTSEE CS
        WD40   1 gqclrtltGHss.vtslafspdgawla.sGsdDgtv 34 
                 g+c ++++ H++ v+sl+++p  + ++ sGs+D+tv
  KKY18391.1 307 GKCAKSYSMHKDkVCSLDWHPTESTVLlSGSYDQTV 342
                 6899******666************644******98 PP

  == domain 4  score: 21.4 bits;  conditional E-value: 7.3e-08
                 EEEEEEESS.SSEEEEEEETTSSE.......EEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgaw.......lasGsdDgtvriWd 38 
                 ++++tl +H + v+s++              l++GsdD+tv++W+
  KKY18391.1 397 KPVWTLQAHdGAVSSFD------VnpvipgfLVTGSDDKTVKLWN 435
                 7899*****66699995......3333344499***********8 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.017
                 EETTSSE....EEEEETTSEEEEEE CS
        WD40  18 fspdgaw....lasGsdDgtvriWd 38 
                 f pd+       ++Gs +g + +Wd
  KKY18391.1 459 FAPDSEVgfrlAVAGS-KGQLQVWD 482
                 6666777767345799.*******9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.2   1.4e+04      50      66 ..     213     229 ..     211     231 .. 0.69
   2 !   19.8   0.1   1.7e-07   0.00074      47      90 ..     284     326 ..     260     328 .. 0.87
   3 ?    4.0   0.0     0.014        61      36      71 ..     358     394 ..     338     415 .. 0.80
   4 ?    1.6   0.0     0.077   3.4e+02      28      72 ..     398     441 ..     394     454 .. 0.81
   5 ?    3.0   0.0     0.028   1.3e+02      50      79 ..     466     495 ..     452     502 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.2
  ANAPC4_WD40  50 gklLavaysdgevrlld 66 
                  g++ a+a+ d  +++ d
   KKY18391.1 213 GNFVAIATMDPDIEVWD 229
                  77778887777776655 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 1.7e-07
  ANAPC4_WD40  47 kpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  ++  +lLa a +d +v+l d ++gk+ +s+s++++k v++l+W 
   KKY18391.1 284 RQHRNLLASASADKTVKLWDLNTGKCAKSYSMHKDK-VCSLDWH 326
                  456689*****************************5.******6 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.014
  ANAPC4_WD40  36 kedsevrsLaWkpdg.klLavaysdgevrlldaesgk 71 
                  + +s v+ ++W+p + +++ v ++ g v  +da+ g 
   KKY18391.1 358 SVGSDVETVRWNPHDpNFFFVTTESGMVLYFDASAGS 394
                  56899*******96548999999*****999998874 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.077
  ANAPC4_WD40  28 rvwtleedkedsevrsLaWkpd.gklLavaysdgevrlldaesgkv 72 
                   vwtl  +++d+ v+s+  +p    +L+ + +d +v+l ++++ k 
   KKY18391.1 398 PVWTL--QAHDGAVSSFDVNPViPGFLVTGSDDKTVKLWNVQDNKP 441
                  58888..788999999998886356899999999******999875 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.028
  ANAPC4_WD40  50 gklLavaysdgevrlldaesgkvvhslsvk 79 
                  g  Lava s+g++++ d ++   ++++ ++
   KKY18391.1 466 GFRLAVAGSKGQLQVWDTSTNAAIRKVFAN 495
                  557***************999998887665 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0      0.94   4.2e+03     225     248 ..     209     231 ..     207     231 .. 0.84
   2 !   26.2   0.6   6.7e-10     3e-06     203     281 ..     258     332 ..     254     417 .. 0.79
   3 !    2.6   0.1     0.009        40     232     253 ..     421     442 ..     420     449 .. 0.85
   4 ?    1.1   0.0     0.027   1.2e+02     238     257 ..     474     493 ..     468     519 .. 0.75

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 0.94
                 ....TTTEEEEEETT-EEEEEETT CS
      Nup160 225 vveigqtylfalsrdgkLrvWnll 248
                 +++ + ++++ ++ d  + vW+l+
  KKY18391.1 209 ETS-HGNFVAIATMDPDIEVWDLD 231
                 555.8899*************996 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 6.7e-10
                 TSS--SS---TT-ECEEEEET.......TTTEEEEEETT-EEEEEETTTTEEEEEEE--.-SSSTTS--SSEESEEESSSS CS
      Nup160 203 ladpsrrksgasvalsldvavavvei..gqtylfalsrdgkLrvWnlltgkclatidllrdeeaqdessskstldpaessl 281
                 +++ ++rk++++ +  +d++ a +    ++++l+++s d+++++W+l+tgkc+ + ++     ++++s  +    p+es+ 
  KKY18391.1 258 KKKRKKRKTKVNDEYHVDAVLALAANrqHRNLLASASADKTVKLWDLNTGKCAKSYSMH---KDKVCSLDW---HPTESTV 332
                 5666788999999999999999987789***************************9999...467777777...6666654 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.009
                 EEEEEETT-EEEEEETTTTEEE CS
      Nup160 232 ylfalsrdgkLrvWnlltgkcl 253
                 +l++ s d+++++Wn++++k+ 
  KKY18391.1 421 FLVTGSDDKTVKLWNVQDNKPS 442
                 6778899**********99975 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.027
                 TT-EEEEEETTTTEEEEEEE CS
      Nup160 238 rdgkLrvWnlltgkclatid 257
                 + g L+vW+++t+  ++   
  KKY18391.1 474 SKGQLQVWDTSTNAAIRKVF 493
                 6689*********9887655 PP

>> DUF4398  Domain of unknown function (DUF4398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.9   2.3e-05       0.1      19      50 ..      41      71 ..      34      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.3e-05
     DUF4398 19 eeyApaeleeAreaLaqAeaamaekdyeeAdh 50
                +++A+++le+A+e L++A++   ++++ee+d+
  KKY18391.1 41 SKLAQLQLEDAQEELEKAKRGE-QGSDEEVDE 71
                799*****************66.666666875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.89
# Mc/sec: 1843.72
//
Query:       KKY18392.1  [L=263]
Description: hypothetical protein UCRPC4_g04962 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.51
# Mc/sec: 1555.61
//
Query:       KKY18393.1  [L=380]
Description: putative 6-phosphogluconate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-21   74.2   0.0    1.9e-20   72.6   0.0    1.8  1  DUF1932    Domain of unknown function (DUF1932)
  ------ inclusion threshold ------
        0.1   12.4   0.3       0.84    9.4   0.3    2.1  2  PPP1R35_C  Protein phosphatase 1 regulatory subunit 35 C-term
        1.8    9.7  10.7        3.1    8.9  10.7    1.4  1  Ecl1       ECL1/2/3 zinc binding proteins


Domain annotation for each model (and alignments):
>> DUF1932  Domain of unknown function (DUF1932)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0   3.2e-24   1.9e-20       1      70 []     219     341 ..     219     341 .. 0.97

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 3.2e-24
                 HHHTT-HHHHHHHHHHHSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT............................................. CS
     DUF1932   1 AhrlGVldelldeleeslpallaraergltgmppkAyRwveEMeeiaetlaeeg............................................. 54 
                 Ahr G+l +lld+l+++ p+++a +++g+t mppkAyRwv+EM+eia+ ++++g                                             
  KKY18393.1 219 AHRSGILSDLLDHLDTYSPNTNALLQKGVTAMPPKAYRWVDEMREIANGFEAAGwgessseevnddddddgfsntnetpkkpdddgtgtvdveadqksf 317
                 9************************************************************************************************** PP

                 ........S--HHHHHHHHHHHHC CS
     DUF1932  55 ........lepqmfraiaevyrlv 70 
                          ++++f++ia+vy+ v
  KKY18393.1 318 ediipllrSTSKIFQGIADVYKFV 341
                 *******98899*********976 PP

>> PPP1R35_C  Protein phosphatase 1 regulatory subunit 35 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   0.00014      0.84      83     135 ..      68     118 ..      41     122 .. 0.74
   2 ?   -0.1   0.0      0.12   7.1e+02      44      67 ..     303     326 ..     291     334 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00014
   PPP1R35_C  83 apreakakpkkeklpePdlldFfdPeelveetplltvkglpsllpslepaPae 135
                 +p+++ a++  +++peP+ + F+d++ +   t++ +++ + ++ ps+++ +++
  KKY18393.1  68 LPSAEAAAA-APQTPEPKQKIFIDLNAISPTTAF-KISTFFPPSPSPSSSSSI 118
                 444444444.489***********7666666665.999999999998888776 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.12
   PPP1R35_C  44 kaaegvNvprdqslYkdLvsldvd 67 
                   + +v v+ dq+ ++d ++l  +
  KKY18393.1 303 DGTGTVDVEADQKSFEDIIPLLRS 326
                 567789***********9999655 PP

>> Ecl1  ECL1/2/3 zinc binding proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  10.7   0.00052       3.1      57     169 ..      69     191 ..       9     196 .. 0.44

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00052
        Ecl1  57 pseprdsavpsrp.sfsripsdssdsksdldptewksrpasppspssssswnylstfpstsrsssss...........................ssest 127
                 ps  +  a+p++p + ++i +d ++ ++ +  + ++  ++ +pspssss                 s                           + +  
  KKY18393.1  69 PSAEAAAAAPQTPePKQKIFIDLNAISPTTAFKIST-FFPPSPSPSSSS-----------------SilfldggiigpppsfspststwilpsiPISGP 149
                 122222344444433333333333333333333333.444444444444.................333444444444444444444445554834444 PP

        Ecl1 128 tsssstsssssssasssssessdrpLpprpsysssssrtksi 169
                  + sst++++++++ s+ +++    L+ rp +sssss+t+ i
  KKY18393.1 150 IPLSSTTTTTTTTTPSHLTPHLLSTLNLRPLFSSSSSSTSPI 191
                 444444444444444444444455555566666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2469.70
//
Query:       KKY18394.1  [L=829]
Description: putative wd repeat-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-07   31.3   0.8     0.0028   18.5   0.5    3.4  3  WD40            WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.24   10.5   8.3       0.43    9.7   8.3    1.3  1  Astro_capsid_p  Turkey astrovirus capsid protein


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.14   1.3e+03       3      25 ..      29      52 ..      27      64 .. 0.61
   2 !   18.5   0.5   3.1e-07    0.0028       3      38 .]     639     678 ..     637     678 .. 0.74
   3 !    8.1   0.0   0.00057       5.1       5      37 ..     686     719 ..     682     720 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.14
                EEEEEE..SSSSEEEEEEETTSSE.E CS
        WD40  3 clrtlt..GHssvtslafspdgaw.l 25
                ++ + +  GH  +t+++ s++++  +
  KKY18394.1 29 PQMSPDdnGH--ITACKISDSNPNeM 52
                5555543388..****9777666543 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 3.1e-07
                 EEEEEESSSSEEEEE....EETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGHssvtsla....fspdgawlasGsdDgtvriWd 38 
                 ++r+++GH++v  ++    +  d  +++sGsdDg+  iWd
  KKY18394.1 639 HTRIYKGHCNVKTVKdinfYGLDDEYIISGSDDGNFFIWD 678
                 5799****5544444444555577889************9 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00057
                 EEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   5 rtltGHss.vtslafspdgawlasGsdDgtvriW 37 
                  +l+G +  v+ ++ +p+ +++a+++ D+tv+i+
  KKY18394.1 686 NILEGDGEiVNVIQGHPYEPMIAASGIDNTVKIF 719
                 566666334688899******************7 PP

>> Astro_capsid_p  Turkey astrovirus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   8.3   4.8e-05      0.43     232     288 ..     567     614 ..     532     628 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 4.8e-05
                     .XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXX CS
  Astro_capsid_p 232 eeisdpsdeedeevsdeetdtevesdeDeddevdrfDletsyeSeaeDddvennRvt 288
                       i d   ee    + +++ +++++d Dedd+vd f      eS+++Ddd   +Rv+
      KKY18394.1 567 ASIEDVIAEEG--ENRNNERAGTDTDSDEDDDVDAF------ESDSDDDD-TAQRVV 614
                     22222222222..34444455666677777888888......89******.888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (829 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.48
# Mc/sec: 5207.21
//
Query:       KKY18395.1  [L=478]
Description: putative rna binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-12   45.4   0.0      9e-09   35.0   0.0    2.6  2  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
  ------ inclusion threshold ------
      0.016   15.7   0.2      0.046   14.2   0.2    1.7  1  RXLR         RXLR phytopathogen effector protein, Avirulence 
      0.024   14.0   4.7      0.036   13.4   4.7    1.2  1  NOA36        NOA36 protein
       0.03   13.9   4.6      0.047   13.3   4.6    1.3  1  PPP4R2       PPP4R2
      0.061   13.1   0.1        1.6    8.5   0.0    2.8  3  RRM_Rrp7     Rrp7 RRM-like N-terminal domain
        1.8    6.7   8.0        2.3    6.3   8.0    1.2  1  Nop14        Nop14-like family
          4    7.3   6.3        6.7    6.5   6.3    1.2  1  Sigma70_ner  Sigma-70, non-essential region


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0012       3.2       1      27 [.      21      50 ..      21      61 .. 0.80
   2 !   35.0   0.0   3.5e-12     9e-09       1      69 [.     261     338 ..     261     339 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0012
                EEEESETTTSSHHHHHHHHHT.TSCE..EE CS
       RRM_1  1 lfVgnLppdvteeeLkelFsk.fGpi..ks 27
                lf+ +Lp++v ++++k+l +k +  i  k+
  KKY18395.1 21 LFLAGLPNNVGWQDIKDLVRKaCPNIrlKH 50
                7999**************999776664445 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 3.5e-12
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE........TTTSEEEEEEEEESSHHHHHHHHHHHTT.EEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd........etgkskgfafVeFeskedAekAlealng.kklggrel 69 
                 +f++nL +++t+++Lk+ ++ +G+++++++ ++        + ++++ +++V F ++++A++A++ ++g + ++g ++
  KKY18395.1 261 VFIRNLDSSITWQQLKDRMRTVGEVSRCEVKPEnvqkgntsQCRPPRSWGIVIFVDRSSADRAIQVFDGcEWINGYKM 338
                 8*******************************99965522222346789********************999999876 PP

>> RXLR  RXLR phytopathogen effector protein, Avirulence activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   1.8e-05     0.046      87     127 ..      68     108 ..      61     114 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.8e-05
        RXLR  87 mlanekyakklFreWkanGftlkdieseLkqsearklkekY 127
                 +++ ++ a+k+++   anG+t+k i+ +L+++e++ +++ Y
  KKY18395.1  68 IINGRDQAEKAYKYFLANGYTGKSITVSLASAEYDYQENQY 108
                 6777999**************************99444444 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   4.7   1.4e-05     0.036     261     304 ..     427     470 ..     358     474 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.4e-05
       NOA36 261 kalasgddeddegdedddddddeedddeeeddedeeeeeeeese 304
                   +  g++   +g ed+d+d+ +ed++e e+de+ +  ee+ese
  KKY18395.1 427 PLVIDGNKARYSGTEDEDEDSSDEDEEESEEDEEGDGSEESESE 470
                 33333366666777777777777777777777776666665554 PP

>> PPP4R2  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   4.6   1.8e-05     0.047     186     283 ..     354     469 ..     285     473 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.8e-05
      PPP4R2 186 sipwvdekteselspfikeidsimsvnlgfedeeekeeddneseesaseseeiteekdesvkvee.................................. 250
                 s +++ ++t+ ++s +++                                              +                                  
  KKY18395.1 354 SSKSSSSNTKPNKSFSNQ----------------------------------------------Klsrggacpppqtnkslsnpakltssihsdrsian 406
                 111111111111111111..............................................12223333333333333333333333333333333 PP

      PPP4R2 251 ..............................kdddeeddeedtdyveeeeddesedddeeeeee 283
                                                +  e++de+++d +eee+++++e d +ee+e+
  KKY18395.1 407 sassttrsslsggtgcgggaplvidgnkarYSGTEDEDEDSSDEDEEESEEDEEGDGSEESES 469
                 346666667899999999999999999655333344444444433333333333333333333 PP

>> RRM_Rrp7  Rrp7 RRM-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.06   1.5e+02      38      72 ..     255     289 ..     248     301 .. 0.80
   2 ?    8.5   0.0   0.00062       1.6     102     131 ..     296     325 ..     261     328 .. 0.64
   3 ?   -2.0   0.2         1   2.7e+03      87     113 ..     339     365 ..     336     368 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.06
    RRM_Rrp7  38 eessrslFlvNlPiettletlkkffqkvalgatie 72 
                 + + r++F+ Nl    t ++lk  +++v   ++ e
  KKY18395.1 255 PTQHRTVFIRNLDSSITWQQLKDRMRTVGEVSRCE 289
                 55689*********************996666555 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00062
    RRM_Rrp7 102 eekdeeeakl...PkntglvkfvDkssvelafn 131
                 ++ + +       P+  g+v fvD+ss++ a +
  KKY18395.1 296 QKGNTS---QcrpPRSWGIVIFVDRSSADRAIQ 325
                 223333...2455**************998765 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1
    RRM_Rrp7  87 sidltkltsdlelkdeekdeeeaklPk 113
                  ++l++++s  + ++++k++++++ P+
  KKY18395.1 339 RVNLSRPSSHQTHHQSSKSSSSNTKPN 365
                 688888888888867777766666666 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   8.0   0.00088       2.3     348     400 ..     439     470 ..     383     478 .] 0.56

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00088
       Nop14 348 eeededdfeedddlveseseeeeeeeeedeeeeedeeeeeeeeededdlsdle 400
                 + eded++++d+d++ese++e                     e d +++s+ e
  KKY18395.1 439 GTEDEDEDSSDEDEEESEEDE---------------------EGDGSEESESE 470
                 333333333333222222221.....................11111111111 PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   6.3    0.0026       6.7      33      62 ..     441     470 ..     416     477 .. 0.50

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0026
  Sigma70_ner  33 eeeeeeeeeeedeeeeeeeedddeeesese 62 
                  e+e+e++++e++ee+ee+ee d++eesese
   KKY18395.1 441 EDEDEDSSDEDEEESEEDEEGDGSEESESE 470
                  222332222222222222233333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1044  (0.0582297); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 3137.88
//
Query:       KKY18396.1  [L=362]
Description: putative bzip transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-15   55.5   0.0      1e-14   54.6   0.0    1.4  1  DUF3425   Domain of unknown function (DUF3425)


Domain annotation for each model (and alignments):
>> DUF3425  Domain of unknown function (DUF3425)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   5.6e-19     1e-14       3     116 ..     240     353 ..     238     359 .. 0.86

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 5.6e-19
     DUF3425   3 lprfpispseeaveklpenlrPtelQlriaHpveidvlpwpelRdrllrafqeeeidedeffrdvvstlivWsieeeelet.......aeissaelsag 94 
                 l+r+ + p++++++ +p  l+P + Q+ +aH+v id++p p lR++ll+++++             ++ ++W    +e+         +++s+a++++ 
  KKY18396.1 240 LMRWLLIPTAKRYADVPDILKPLPVQRMVAHHVAIDFIPLPSLREALLKNMRD-----WMTTLPAAKMSVNWTNGLDEAVVpdddlgcLRLSEAFEKH- 332
                 79***********************************************4333.....2333344567899*8655555559999999999*****99. PP

     DUF3425  95 dvtdlegWelkesFfrkYpylv 116
                  vtdl++W++ es +  +p+l 
  KKY18396.1 333 -VTDLRNWSIGESILASFPELR 353
                 .**************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2539.32
//
Query:       KKY18397.1  [L=263]
Description: putative 6-phosphogluconolactonase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-71  238.5   0.0      9e-71  238.3   0.0    1.0  1  Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phospho


Domain annotation for each model (and alignments):
>> Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.3   0.0     5e-75     9e-71       2     225 .]      12     245 ..      11     245 .. 0.94

  Alignments for each domain:
  == domain 1  score: 238.3 bits;  conditional E-value: 5e-75
                      SHHHHHHHHHHHHHHHHHHHHHHHS-EEEEE--SHCHHHHHHHHHCSG.GGG..GS-GGGEEEEESEEESS-TTSTT-HHHHHHHHTGGGS-.. CS
  Glucosamine_iso   2 dkeelaealaarivealeealaergraslalsGGstpkalyealaeeeeaaa..aldwskvhvflgDERfVpaddpdsNaklareallskvk.. 91 
                      d+++la++l  +i++++++ la+++ +++a+sGGs+pk+l +al ++ + a   al+++k++vf++DER Vp d++dsN++l++e++l++++  
       KKY18397.1  12 DTDALAKSLRTYIIQCQNAGLARHDAFKVAVSGGSLPKTLAKALLADGTGAPddALQFDKWEVFYADERAVPLDHEDSNHRLVEEEWLDRIPdg 105
                      789****************************************99877555489***********************************98545 PP

                      --GGGEE-S-TTSSTHHHHHHHHHHHHHHHHCC....SSSSSESEEEE---TTS-BTTB-TTCHHHHCSSSSEEEESSBSTSSS-EEEE-HHHH CS
  Glucosamine_iso  92 ipeanvhpikesaaeapeaaaaayeeelkella....kelpvfDlvlLGmGpDGHtaSLFPgspeleetdrlvvavedspkpppeRitlTlpvl 181
                      + + +vhpi+ ++ ++p++ a++y+eel + +a     +lp fDl+lLG+GpDGHt+SLFPg++ l+etd++v+++edspkppp+RitlTlpv+
       KKY18397.1 106 LAKPRVHPIDVQHLDDPQELADQYQEELMRSFAakdsVKLPIFDLLLLGCGPDGHTCSLFPGHELLRETDAWVAPIEDSPKPPPKRITLTLPVV 199
                      7777******999999************999999***99******************************************************* PP

                      TTCSEEEEEEESHHHHHHHHHHHTT..TTTSGGGGH-..-SSEEEE CS
  Glucosamine_iso 182 nsarevlflvaGeeKaealeevlsgedpeelPaalve..gqgellw 225
                       +a +++f+++G +K+++l+++l++e+ ++lP+ lv+   ++++ w
       KKY18397.1 200 THALKIAFVATGGGKKDILKKILETEEGRSLPCGLVNegATDKVSW 245
                      ************************************7433366665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 1619.24
//
Query:       KKY18398.1  [L=357]
Description: putative spx domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-05   22.9  17.2       0.01   16.0  12.4    2.9  3  Tropomyosin_1   Tropomyosin like
    0.00063   20.0  16.8      0.026   14.8  13.7    2.5  2  ATG16           Autophagy protein 16 (ATG16)
     0.0007   19.9  13.0       0.53   10.7   0.4    3.4  3  FlaC_arch       Flagella accessory protein C (FlaC)
     0.0029   17.7  13.0        0.6   10.3   0.1    3.9  4  Cnn_1N          Centrosomin N-terminal motif 1
  ------ inclusion threshold ------
      0.014   14.8  15.1       0.61    9.4   0.0    2.4  2  GAS             Growth-arrest specific micro-tubule binding
      0.015   15.3  23.0       0.12   12.4   7.4    3.1  3  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
      0.023   14.6  19.9       0.81    9.5   0.1    3.6  3  KASH_CCD        Coiled-coil region of CCDC155 or KASH
      0.045   13.2  13.3      0.054   13.0   9.0    2.1  2  HMMR_N          Hyaluronan mediated motility receptor N-termi
      0.046   14.3  14.6       0.37   11.4   5.0    3.7  3  SlyX            SlyX
      0.047   14.2  20.0        4.7    7.8   0.0    3.5  2  APG6_N          Apg6 coiled-coil region
      0.054   13.7   0.7      0.054   13.7   0.7    3.7  3  ABC_tran_CTD    ABC transporter C-terminal domain
      0.063   12.6  16.8        0.7    9.2   0.1    3.0  3  DUF3450         Protein of unknown function (DUF3450)
      0.072   13.5   0.2      0.072   13.5   0.2    3.5  3  ZapB            Cell division protein ZapB
      0.073   12.6   8.3      0.028   14.0   4.8    1.9  2  LRS4            Monopolin complex subunit LRS4
       0.13   12.8  25.0        3.9    7.9  21.4    2.9  2  Fez1            Fez1
        0.2   11.2  12.8        3.6    7.0   7.8    2.3  2  Leu_zip         Leucine zipper
       0.23   11.4   0.0       0.23   11.4   0.0    3.0  1  EMP24_GP25L     emp24/gp25L/p24 family/GOLD
       0.26   10.8  17.4        3.6    7.1   0.2    2.5  2  Filament        Intermediate filament protein
       0.29   11.2   5.3       0.63   10.2   0.6    2.8  2  DUF5595         Domain of unknown function (DUF5595)
       0.34   10.3   5.4        3.1    7.2   0.1    2.3  2  FliD_C          Flagellar hook-associated protein 2 C-terminu
       0.35   11.0  10.2        1.6    8.9   0.2    2.9  2  bZIP_1          bZIP transcription factor
       0.36   10.5   3.2        9.2    5.9   0.1    2.3  2  DUF4988         Domain of unknown function
       0.37   10.6   3.3       0.86    9.4   0.0    2.7  3  DASH_Dam1       DASH complex subunit Dam1
       0.42   11.0   2.8        8.2    6.9   0.1    2.8  2  LPP             Lipoprotein leucine-zipper
       0.54   10.1   9.9        7.1    6.4   0.1    2.7  3  Phage_GP20      Phage minor structural protein GP20
       0.57   10.3   3.9       0.46   10.6   1.3    2.0  2  Cauli_DNA-bind  Caulimovirus DNA-binding protein
       0.73    9.5  19.4      0.051   13.3   7.8    2.8  3  DUF4201         Domain of unknown function (DUF4201)
       0.93    9.8   9.6        1.5    9.2   0.0    2.9  2  BLOC1_2         Biogenesis of lysosome-related organelles com
          1    9.6  19.6        5.1    7.4   0.2    3.4  3  TMF_TATA_bd     TATA element modulatory factor 1 TATA binding
        1.1    9.1  11.7        4.9    7.0   3.9    2.8  3  Sec34           Sec34-like family
        1.8    9.2   9.5        5.7    7.6   0.1    2.7  2  Syntaxin-6_N    Syntaxin 6, N-terminal
        2.5    7.4  12.2        3.3    6.9   0.4    2.1  2  CorA            CorA-like Mg2+ transporter protein
        2.7    8.1  25.2        7.2    6.7   5.0    3.2  3  TPR_MLP1_2      TPR/MLP1/MLP2-like protein
        3.6    8.1   9.6         35    5.0   0.0    3.1  2  DUF16           Protein of unknown function DUF16
        3.7    6.1   8.9        9.4    4.7   0.0    2.1  2  FapA            Flagellar Assembly Protein A
          4    7.6  13.4          6    7.0   1.2    3.6  3  bZIP_2          Basic region leucine zipper
        4.8    7.0  15.9        2.2    8.1   0.3    3.5  4  DivIC           Septum formation initiator
        8.6    6.2  10.3         11    5.9   2.3    3.2  2  TRAF_BIRC3_bd   TNF receptor-associated factor BIRC3 binding 


Domain annotation for each model (and alignments):
>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0  12.4   2.2e-05      0.01       2      77 ..     114     189 ..     113     234 .. 0.90
   2 ?   -1.0   0.2       3.8   1.8e+03       6      29 ..     213     236 ..     209     242 .. 0.60
   3 !    7.8   0.1    0.0073       3.4      69      99 ..     290     320 ..     282     347 .. 0.57

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.2e-05
  Tropomyosin_1   2 lnsLkleaeeaqekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnea 77 
                    l++L+ e e+ ++ +   + +  +le+++   ++ei++Lt+    l+ +ve le+++++  +  ee++k++  n a
     KKY18398.1 114 LTTLRKEHEALLAAYGRQQTRCTTLEKKTRVSDNEINDLTEERIRLQTQVEMLESQVEDLIRVREEAHKQSVANSA 189
                    789******************************************************************9988874 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 3.8
  Tropomyosin_1   6 kleaeeaqekaeeleekvKeleqe 29 
                    kle e++ +  +   +k+ +le++
     KKY18398.1 213 KLEREQWEKEKSVFIKKIADLESK 236
                    666666666665556666666555 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0073
  Tropomyosin_1  69 ekkktnnealtrkiqlLEeeleesdkkLket 99 
                    + +k + e+l+ kiq++  e+ee d+ +++ 
     KKY18398.1 290 ADLKRTIETLEAKIQQMSTEAEEIDRAMNSM 320
                    3344444455555555554444444444433 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8  13.7   5.5e-05     0.026      54     179 ..      76     203 ..      61     217 .. 0.83
   2 ?    5.6   0.0     0.035        17      88     130 ..     287     322 ..     259     344 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.5e-05
       ATG16  54 skksakekeasasq..snskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelreke 150
                 + +++ + ++ a++  +n ++++++q+l+ ++++    l++l k+++ l     + ++   +le+k++  ++++++l++er +l+t+++ +e +++++ 
  KKY18398.1  76 PVEPSHSPPQHATSfvTNIARTTHLQDLQHEVSKKTLALTTLRKEHEALLAAYGRQQTRCTTLEKKTRVSDNEINDLTEERIRLQTQVEMLESQVEDLI 174
                 333333333333336678999999*************************************************************************** PP

       ATG16 151 klvqdlqDElsaLqlqlnqaEeklrklek 179
                 ++ ++ +   +a   q+ q+   + kl++
  KKY18398.1 175 RVREEAHKQSVANSAQYMQIMTMSSKLQA 203
                 99999999999999999998888888876 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.035
       ATG16  88 eelaelyksrgelaqrllelneelqkleeklkedeerlaelea 130
                  e a+l ++ ++l+ +++++++e ++ ++ ++++        +
  KKY18398.1 287 FENADLKRTIETLEAKIQQMSTEAEEIDRAMNSM-------MR 322
                 4444444444444444444444444444433333.......33 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.22     1e+02       3      26 ..     101     124 ..      99     126 .. 0.90
   2 !   10.6   3.6    0.0012      0.57       1      43 [.     134     176 ..     134     179 .. 0.93
   3 !   10.7   0.4    0.0011      0.53      11      42 ..     291     322 ..     285     328 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.22
   FlaC_arch   3 delEnklsklsteletvkkeneel 26 
                 ++l+ ++sk    l+t++ke e l
  KKY18398.1 101 QDLQHEVSKKTLALTTLRKEHEAL 124
                 6899****************9865 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0012
   FlaC_arch   1 ridelEnklsklsteletvkkeneelsksveelkenVkdllsL 43 
                 r  +lE+k    + e++ + +e   l+++ve+l+ +V+dl+ +
  KKY18398.1 134 RCTTLEKKTRVSDNEINDLTEERIRLQTQVEMLESQVEDLIRV 176
                 56789***********************************976 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.0011
   FlaC_arch  11 klsteletvkkeneelsksveelkenVkdlls 42 
                 +l+ ++et++++++++s++ ee+++  + ++ 
  KKY18398.1 291 DLKRTIETLEAKIQQMSTEAEEIDRAMNSMMR 322
                 56779*******************99998886 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.097        46      42      71 ..      90     119 ..      79     121 .. 0.81
   2 !    7.6   3.0    0.0091       4.3      25      70 ..     137     181 ..     132     184 .. 0.76
   3 ?   -0.7   0.2       3.4   1.6e+03      22      56 ..     193     220 ..     191     237 .. 0.49
   4 !   10.3   0.1    0.0013       0.6      12      46 ..     285     321 ..     282     344 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.097
      Cnn_1N  42 lkenielkveveslqkelkekkkllreaek 71 
                   +ni   +++++lq+e+ +k+  l+ + k
  KKY18398.1  90 FVTNIARTTHLQDLQHEVSKKTLALTTLRK 119
                 4569999**************999988876 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0091
      Cnn_1N  25 fLeerleklseeqkeellkenielkveveslqkelkekkkllreae 70 
                 +Le++   ++  ++++l +e+i l+++ve l+ +++ + +  +ea+
  KKY18398.1 137 TLEKKTRVSD-NEINDLTEERIRLQTQVEMLESQVEDLIRVREEAH 181
                 5555544444.59*********************998876555555 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 3.4
      Cnn_1N  22 riyfLeerleklseeqkeellkenielkveveslq 56 
                 +i+++ ++l++ + e+ +         k e+e+ +
  KKY18398.1 193 QIMTMSSKLQAQGAEEARM-------WKLEREQWE 220
                 5666666666666533332.......233333333 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.0013
      Cnn_1N  12 LkKENFdLKLriyfLeerleklse..eqkeellkeni 46 
                 L+ EN dLK  i +Le +++++s+  e+++ ++++ +
  KKY18398.1 285 LQFENADLKRTIETLEAKIQQMSTeaEEIDRAMNSMM 321
                 6679999999999999999999996666666665554 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  11.1    0.0083       3.9      47     137 ..      98     185 ..      92     210 .. 0.79
   2 ?    9.4   0.0    0.0013      0.61      53      99 ..     286     332 ..     281     341 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0083
         GAS  47 kelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevq 137
                  +l+++++e ++ +  L+++++e e L   l+ y +++ + + l+++ +++++e++dl++e   l+ ++e +e++ ++l +  e+a ++  
  KKY18398.1  98 THLQDLQHEVSKKTLALTTLRKEHEAL---LAAYGRQQTRCTTLEKKTRVSDNEINDLTEERIRLQTQVEMLESQVEDLIRVREEAHKQSV 185
                 678999999999999999999999988...7889999999999999999999999999999999999999999999988777776665543 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0013
         GAS  53 sqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelek 99 
                 + en +lk +++++e++++++  ++++ ++  +s++++++rl++ ++
  KKY18398.1 286 QFENADLKRTIETLEAKIQQMSTEAEEIDRAMNSMMRIRRRLTDITE 332
                 56899999999999999999999999999999999999999988765 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   7.4   0.00026      0.12      59     138 ..      98     173 ..      94     175 .. 0.91
   2 ?    3.1   8.9      0.19        88      28     105 ..     158     239 ..     149     243 .. 0.72
   3 ?   10.2   0.2    0.0012      0.56      47      86 ..     289     328 ..     279     354 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00026
  CENP-F_leu_zip  59 eeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqekvqmkeeskaaveeLqtqlkel 138
                     ++++ l++e ++ +l L++lr+e e L      +q r  +Le+      n ++++ +e++++    +++ve+L++q+++l
      KKY18398.1  98 THLQDLQHEVSKKTLALTTLRKEHEALLAAYGRQQTRCTTLEKKTRVSDNEINDLTEERIRL----QTQVEMLESQVEDL 173
                     5688999999******************************************9999998875....68899999999876 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.19
  CENP-F_leu_zip  28 nLerelemseenqekvileaEtskaevet...lkeeieelaeelreleld.LvalrsekeeLekelqkkqervseLeslnss 105
                     +L+ ++em+e++ e++i+  E++ ++  +      +i++++++l+   ++     + e+e+ eke     +++ +Les  +s
      KKY18398.1 158 RLQTQVEMLESQVEDLIRVREEAHKQSVAnsaQYMQIMTMSSKLQAQGAEeARMWKLEREQWEKEKSVFIKKIADLESKAVS 239
                     588999999999999998777665544431223457788888888665541556689**********99*******998765 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.0012
  CENP-F_leu_zip  47 aEtskaevetlkeeieelaeelreleldLvalrsekeeLe 86 
                       + k ++etl+++i+++++e +e+   ++++ + +  L+
      KKY18398.1 289 NADLKRTIETLEAKIQQMSTEAEEIDRAMNSMMRIRRRLT 328
                     33459999**********9999999988887765555554 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   9.0      0.04        19      85     139 ..     130     184 ..      96     193 .. 0.81
   2 ?    5.6   0.4     0.027        13      80     110 ..     206     236 ..     197     245 .. 0.86
   3 ?    9.5   0.1    0.0017      0.81      20      55 ..     285     320 ..     283     334 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.04
    KASH_CCD  85 rlkaqnkqlekenqsLiakiesLqeenikllaekdelkkklkeLlkekaeLkkql 139
                 r +++   lek       +i++L ee i+l+++ ++l++++++L++ ++e +kq 
  KKY18398.1 130 RQQTRCTTLEKKTRVSDNEINDLTEERIRLQTQVEMLESQVEDLIRVREEAHKQS 184
                 6678888999999999999999999999999999999999999999988877775 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.027
    KASH_CCD  80 eEkrarlkaqnkqlekenqsLiakiesLqee 110
                  E+++  k +++q eke+   i+ki++L+ +
  KKY18398.1 206 AEEARMWKLEREQWEKEKSVFIKKIADLESK 236
                 5788889999******************987 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0017
    KASH_CCD  20 LaeenskLkkavetaeetnakLteeieeLkkklkst 55 
                 L+ en+ Lk+++et e + ++++ e ee+ + + s+
  KKY18398.1 285 LQFENADLKRTIETLEAKIQQMSTEAEEIDRAMNSM 320
                 666777888888888888888877777777666654 PP

>> HMMR_N  Hyaluronan mediated motility receptor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   9.0   0.00011     0.054      50     164 ..      93     197 ..      67     238 .. 0.72
   2 ?    2.3   0.1       0.2        92     221     244 ..     291     314 ..     282     343 .. 0.51

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00011
      HMMR_N  50 aaarkvsvlelkkaksqkkdkskltkekkkqkeLEkeiRsLvqergeqdkrlqaleeelkkveakLlaavrektslsanvasLekqlaelkranelLks 148
                   ar++ +         ++ + +++k+   +  L ke  +L+   g q  r   le++ +  +  ++ ++ e+  l+  v  Le q  +l r+ e   +
  KKY18398.1  93 NIARTTHL---------QDLQHEVSKKTLALTTLRKEHEALLAAYGRQQTRCTTLEKKTRVSDNEINDLTEERIRLQTQVEMLESQVEDLIRVREEAHK 182
                 33333333.........4444455555567889***********************************************************9986443 PP

      HMMR_N 149 KvsedgtkKklnsLsl 164
                    + ++   ++++++
  KKY18398.1 183 QSVA-NSAQYMQIMTM 197
                 3333.33445666555 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.2
      HMMR_N 221 eekseteklleyieelsnvseqle 244
                 + k  +e l++ i+++s ++e+++
  KKY18398.1 291 DLKRTIETLEAKIQQMSTEAEEID 314
                 222222222222222222222222 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1       1.5   7.1e+02      18      44 ..      99     125 ..      95     130 .. 0.86
   2 ?   11.4   5.0   0.00079      0.37       2      55 ..     132     185 ..     131     193 .. 0.88
   3 ?    6.2   0.2     0.034        16       8      45 ..     285     322 ..     280     340 .. 0.62

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX  18 tieeLndvvaeqqqqidrlqrqlrlla 44 
                  +++L+ +v +    ++ l+++ ++l 
  KKY18398.1  99 HLQDLQHEVSKKTLALTTLRKEHEALL 125
                 589999999999999999999999885 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00079
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX   2 eerleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessg 55 
                 ++r + LE k    ++ i++L ++ ++ q q++ l+ q++ l +  +e+ ++s 
  KKY18398.1 132 QTRCTTLEKKTRVSDNEINDLTEERIRLQTQVEMLESQVEDLIRVREEAHKQSV 185
                 6799**************************************988777777665 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.034
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX   8 LEiklafqedtieeLndvvaeqqqqidrlqrqlrllae 45 
                 L+ + a + +tie+L + + +   + +++ r ++ +++
  KKY18398.1 285 LQFENADLKRTIETLEAKIQQMSTEAEEIDRAMNSMMR 322
                 55566777788888876666665555555555554443 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0  19.1       1.2   5.6e+02      30     111 ..     112     204 ..      85     242 .. 0.57
   2 ?    7.8   0.0    0.0099       4.7      54      86 ..     287     319 ..     257     337 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 1.2
      APG6_N  30 eflkklkkekkeeek...........qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqle 111
                   l +l+ke++   +            +++++ +++e+ +l +e+ +l+++ + le++ e+l + ++++++++ a  ++  + ++  ++lq +
  KKY18398.1 112 LALTTLRKEHEALLAaygrqqtrcttLEKKTRVSDNEINDLTEERIRLQTQVEMLESQVEDLIRVREEAHKQSVANSAQYMQIMTMSSKLQAQ 204
                 333444444333221222211111112344445555555555555555555555555555555555555555555554444444444444444 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0099
      APG6_N  54 eeleklekeeeelleeLkelekereeleaelaa 86 
                  e ++l+++ e+l+++++++ +e ee+++++++
  KKY18398.1 287 FENADLKRTIETLEAKIQQMSTEAEEIDRAMNS 319
                 445566666666666666666666666666554 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.3       2.2   1.1e+03      42      61 ..     106     125 ..      93     142 .. 0.62
   2 ?    0.9   1.9       1.2   5.6e+02      31      64 ..     144     170 ..     117     175 .. 0.54
   3 ?   13.7   0.7   0.00012     0.054       6      33 ..     292     319 ..     288     336 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 2.2
  ABC_tran_CTD  42 klaelsaeleeleaeLeely 61 
                   ++++ +  l++l++e e+l+
    KKY18398.1 106 EVSKKTLALTTLRKEHEALL 125
                   33344444555555555554 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 1.2
  ABC_tran_CTD  31 ladpelysdpeklaelsaeleeleaeLeelyerW 64 
                   ++d+       ++++l++e  +l+++ e l+++ 
    KKY18398.1 144 VSDN-------EINDLTEERIRLQTQVEMLESQV 170
                   3444.......44555555555555444444433 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 0.00012
  ABC_tran_CTD   6 eqreleeleaeIeaLEeeiaeleaelad 33 
                    +r +e+lea+I+++ +e +e++ ++++
    KKY18398.1 292 LKRTIETLEAKIQQMSTEAEEIDRAMNS 319
                   5899**********************96 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   7.2    0.0052       2.5      17      89 ..     113     185 ..     106     204 .. 0.87
   2 ?    1.5   0.3      0.32   1.5e+02     194     222 ..     204     232 ..     196     237 .. 0.82
   3 ?    9.2   0.1    0.0015       0.7      56      99 ..     285     328 ..     277     340 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0052
     DUF3450  17 tldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqie 89 
                 +l++++ke e+  aa  + q++ + l+++++   +e+++l+ee  +l+ + e le++v+++ + +++  +q  
  KKY18398.1 113 ALTTLRKEHEALLAAYGRQQTRCTTLEKKTRVSDNEINDLTEERIRLQTQVEMLESQVEDLIRVREEAHKQSV 185
                 57889999999*************************************************9999999887754 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.32
     DUF3450 194 lDgkeagawdqetkqWqaldssyrseirk 222
                 + ++ea +w+ e +qW++ +s + ++i++
  KKY18398.1 204 QGAEEARMWKLEREQWEKEKSVFIKKIAD 232
                 55688999*********998888888875 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0015
     DUF3450  56 lkeeleslevyneqlerlvasqeqeiasleeqieeieeierelv 99 
                 l+ e+++l+   e le+ ++++ +e +++++ ++++ +i+r+l+
  KKY18398.1 285 LQFENADLKRTIETLEAKIQQMSTEAEEIDRAMNSMMRIRRRLT 328
                 56666777777777777777777777777777777777777765 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   1.1       3.1   1.4e+03       6      30 ..     100     124 ..      96     142 .. 0.70
   2 ?   -1.5  11.5       7.3   3.5e+03       9      46 ..     138     193 ..     135     233 .. 0.65
   3 ?   13.5   0.2   0.00015     0.072      20      51 ..     282     313 ..     277     330 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 3.1
        ZapB   6 LeqLEskiqkaidtitlLqmeieeL 30 
                 L+ L+  ++k    +t+L++e e+L
  KKY18398.1 100 LQDLQHEVSKKTLALTTLRKEHEAL 124
                 5666777777777777777777766 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 7.3
        ZapB   9 LEskiqkaidtitlLqmeieeLkeeneelkeenrele..................e 46 
                 LE+k     ++i  L +e  +L+ ++e l+++ + l                   +
  KKY18398.1 138 LEKKTRVSDNEINDLTEERIRLQTQVEMLESQVEDLIrvreeahkqsvansaqymQ 193
                 66666666678999999999999999999999999988874333333333333330 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 0.00015
        ZapB  20 itlLqmeieeLkeeneelkeenreleeeneql 51 
                 + lLq+e+++Lk+  e+l+ ++++++ e e+ 
  KKY18398.1 282 LGLLQFENADLKRTIETLEAKIQQMSTEAEEI 313
                 66899**************9999999665544 PP

>> LRS4  Monopolin complex subunit LRS4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   4.8     6e-05     0.028      42     137 ..     140     236 ..     115     252 .. 0.70
   2 ?   -0.8   0.1       1.9     9e+02      59      85 ..     288     314 ..     278     332 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6e-05
                 XXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        LRS4  42 lktnatdselqnekltdEklllqeQinqLnsdlq...iqksene...klrklnKdqkalleSklsskesevdrfKikLeteesnskvrlqvresklatq 134
                 +kt   d+e   + lt+E++ lq Q++ L s++      ++e      + +++  q  ++ Skl+ + +e +r+  kLe e+  +++++ v  +k a  
  KKY18398.1 140 KKTRVSDNE--INDLTEERIRLQTQVEMLESQVEdliRVREEAHkqsVANSAQYMQIMTMSSKLQAQGAEEARMW-KLEREQ--WEKEKSVFIKKIADL 233
                 456666666..788***************998661114444444222334455556667**********999987.676655..666666666666665 PP

                 XXX CS
        LRS4 135 drk 137
                 + k
  KKY18398.1 234 ESK 236
                 555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.9
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        LRS4  59 EklllqeQinqLnsdlqiqkseneklr 85 
                 E+  l++ i+ L   +q +  e e + 
  KKY18398.1 288 ENADLKRTIETLEAKIQQMSTEAEEID 314
                 777789999999999999998888554 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  21.4    0.0082       3.9      18     169 ..      99     223 ..      96     238 .. 0.58
   2 ?    2.6   0.1      0.34   1.6e+02      78     106 ..     292     320 ..     271     352 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0082
        Fez1  18 QLkdsqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaale 116
                  L+d q ev++k+  + +l+ +   l a+  +++++ ++le++++  ++e++ + +e  r ++++e+l+ +ve l +  +e +++  ++s++  + +++
  KKY18398.1  99 HLQDLQHEVSKKTLALTTLRKEHEALLAAYGRQQTRCTTLEKKTRVSDNEINDLTEERIRLQTQVEMLESQVEDLIRVREEAHKQSVANSAQYMQIMTM 197
                 477777777777777777777777777777777777777777777777777777777777777777777765554444443333333323333333333 PP

        Fez1 117 sdeakaqrqeaeeleelkreverlraeLkeerqkkeeqassFeqERrtWqeeK 169
                 s++ +aq +e+ +                            ++ ER++W++eK
  KKY18398.1 198 SSKLQAQGAEEAR---------------------------MWKLEREQWEKEK 223
                 3333333333332...........................3444444444444 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.34
        Fez1  78 kkseaellrekvekleeelkelreelsel 106
                  k + e+l+ k++++++e +e+ ++++++
  KKY18398.1 292 LKRTIETLEAKIQQMSTEAEEIDRAMNSM 320
                 33333333333333333333333333332 PP

>> Leu_zip  Leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.8    0.0075       3.6     132     204 ..     146     218 ..     130     240 .. 0.70
   2 ?    6.6   0.1      0.01         5     138     185 ..     285     332 ..     280     354 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0075
     Leu_zip 132 kkeierLkeenekLkerlkelEkqatsaleeksklekalkelqkelgekkdekenskeiskleeklaelkldl 204
                 ++ei+ L ee  +L++++++lE+q++++++ +++ +k+  +  ++  +  +++++ +     e+++ +l+ + 
  KKY18398.1 146 DNEINDLTEERIRLQTQVEMLESQVEDLIRVREEAHKQSVANSAQYMQIMTMSSKLQAQGAEEARMWKLEREQ 218
                 689*************************998888877665555555555555555555556666666655443 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.01
     Leu_zip 138 LkeenekLkerlkelEkqatsaleeksklekalkelqkelgekkdeke 185
                 L+ en  Lk  +++lE++++++  e +++++a++++ +     +d +e
  KKY18398.1 285 LQFENADLKRTIETLEAKIQQMSTEAEEIDRAMNSMMRIRRRLTDITE 332
                 7889*************************9999998777666655555 PP

>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0005      0.23     104     149 ..     287     332 ..     252     337 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0005
  EMP24_GP25L 104 ykdsakkekletleselkkleekldsikreqkylrereerlrdtne 149
                   ++++ k ++etle +++++++  ++i r ++++ +  +rl d+ e
   KKY18398.1 287 FENADLKRTIETLEAKIQQMSTEAEEIDRAMNSMMRIRRRLTDITE 332
                  678899****************************999999988876 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  12.6      0.02       9.4      61     149 ..      98     186 ..      77     239 .. 0.79
   2 ?    7.1   0.2    0.0076       3.6     208     249 ..     279     320 ..     268     353 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.02
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  61 kqldeltkerarlqleldnlreeledlrkkyekelnkreevEaelkalrkdldeatlarvdLekkvesLkeelaflkkvheeEvkelqk 149
                  +l++l++e ++  l l +lr+e+e l + y +++++ +++E++ +    +++++t +r+ L+++ve L+ +++ l +v ee  k+  +
  KKY18398.1  98 THLQDLQHEVSKKTLALTTLRKEHEALLAAYGRQQTRCTTLEKKTRVSDNEINDLTEERIRLQTQVEMLESQVEDLIRVREEAHKQSVA 186
                 57999****************************************************************99987766665554444333 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0076
                 XXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 208 sealrsakeeitelrrqiqsleieleslkkqkasleaqlael 249
                 ++ l   + e ++l+r+i++le++++++  +++ + ++++ +
  KKY18398.1 279 TDPLGLLQFENADLKRTIETLEAKIQQMSTEAEEIDRAMNSM 320
                 555666677888999999999999999999999998888765 PP

>> DUF5595  Domain of unknown function (DUF5595)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.6    0.0013      0.63      41      71 ..     137     167 ..     132     169 .. 0.93
   2 ?    2.1   0.4      0.43     2e+02      50      71 ..     293     314 ..     284     316 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0013
     DUF5595  41 kLkelynvdeaqlesleeeekrLeeEierle 71 
                  L+++  v ++++++l+ee+ rL++ +e le
  KKY18398.1 137 TLEKKTRVSDNEINDLTEERIRLQTQVEMLE 167
                 699*************************998 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.43
     DUF5595  50 eaqlesleeeekrLeeEierle 71 
                 ++ +e+le++ + +++E e++ 
  KKY18398.1 293 KRTIETLEAKIQQMSTEAEEID 314
                 4678888888888888888765 PP

>> FliD_C  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   2.3     0.059        28     175     235 ..     115     170 ..      87     203 .. 0.68
   2 ?    7.2   0.1    0.0065       3.1     128     197 ..     279     347 ..     269     356 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.059
                 HHHHHHHHHHHSTT.SHHHHHHHHXXXXHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH CS
      FliD_C 175 trlenllksyvkssngtlqtasknltkqikdldkkiedldkrletleerlkkqfaalekav 235
                 t+l++  + ++++  g  qt+ ++l+k+++  d++i+dl ++       l++q ++le+ v
  KKY18398.1 115 TTLRKEHEALLAAY-GRQQTRCTTLEKKTRVSDNEINDLTEERIR----LQTQVEMLESQV 170
                 44444445555555.777788888888888888887777664333....444444444333 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0065
                 EXTTT..XXEEEXHHHHHHHHHHHHHHHHHHHTTTSS.......SXSHHHHHHHHHHHHHSTT.SHHHHHHH CS
      FliD_C 128 tnknk..GkLelDeekLkkalkenpssveelFsgstsqektvtsdsglatrlenllksyvkssngtlqtask 197
                 t   +  G L++ ++ Lk+ +++  ++++++ +++ + +++++s   +  rl+++ ++  +  ++tlq a  
  KKY18398.1 279 T---DplGLLQFENADLKRTIETLEAKIQQMSTEAEEIDRAMNSMMRIRRRLTDITEPCASHADSTLQLAGA 347
                 3...23499999*********************999999999999999999999999999888888875444 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   1.2    0.0093       4.4      23      63 ..     130     170 ..     129     171 .. 0.95
   2 ?    8.9   0.2    0.0034       1.6      38      62 ..     285     309 ..     282     311 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0093
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  23 RKqaeieeLerrvkaLekeNksLkseleelkkevekLkskv 63 
                 R q ++  Le++  + ++e  +L +e  +l+ +ve L+s+v
  KKY18398.1 130 RQQTRCTTLEKKTRVSDNEINDLTEERIRLQTQVEMLESQV 170
                 899**********************************9997 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0034
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  38 LekeNksLkseleelkkevekLksk 62 
                 L+ eN++Lk ++e+l+ +++++ ++
  KKY18398.1 285 LQFENADLKRTIETLEAKIQQMSTE 309
                 788******************9876 PP

>> DUF4988  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.6     0.048        22       3      34 ..     147     178 ..     146     202 .. 0.82
   2 ?    5.9   0.1     0.019       9.2       8      36 ..     292     320 ..     286     354 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.048
     DUF4988   3 ddvndlkdrvaaleeqvkelndniealkklle 34 
                 +++ndl ++   l++qv+ l++++e l ++ e
  KKY18398.1 147 NEINDLTEERIRLQTQVEMLESQVEDLIRVRE 178
                 79****999999*************9988773 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.019
     DUF4988   8 lkdrvaaleeqvkelndniealkklleeg 36 
                 lk  +++le++++++ ++ e + + +++ 
  KKY18398.1 292 LKRTIETLEAKIQQMSTEAEEIDRAMNSM 320
                 66666666666666666666655555332 PP

>> DASH_Dam1  DASH complex subunit Dam1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       8.6     4e+03       5      23 ..     100     118 ..      96     124 .. 0.50
   2 ?    0.5   0.2       1.1   5.2e+02       5      31 ..     149     175 ..     146     181 .. 0.60
   3 ?    9.4   0.0    0.0018      0.86       1      38 [.     299     336 ..     299     337 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 8.6
   DASH_Dam1   5 faeLaDsletLdknledLq 23 
                 +++L+ ++++ +  l+ L 
  KKY18398.1 100 LQDLQHEVSKKTLALTTLR 118
                 4555555555555555555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.1
   DASH_Dam1   5 faeLaDsletLdknledLqqihesLsd 31 
                 +++L+++   L++++e L++  e+L +
  KKY18398.1 149 INDLTEERIRLQTQVEMLESQVEDLIR 175
                 556666666666666666655555544 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0018
   DASH_Dam1   1 lepafaeLaDsletLdknledLqqihesLsdfNeSFas 38 
                 le ++++++ + e++d+ ++ + +i+ +L+d  e  as
  KKY18398.1 299 LEAKIQQMSTEAEEIDRAMNSMMRIRRRLTDITEPCAS 336
                 6789***************************9999887 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.4      0.22     1e+02      11      25 ..     158     172 ..     148     203 .. 0.68
   2 ?    6.9   0.1     0.017       8.2       6      31 ..     293     318 ..     290     322 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.22
         LPP  11 qLkskvdqlssdvns 25 
                 +L+++v++l+s+v++
  KKY18398.1 158 RLQTQVEMLESQVED 172
                 455555555555443 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.017
         LPP   6 ssqVsqLkskvdqlssdvnsakaaaq 31 
                    +++L++k++q+s +++++  a++
  KKY18398.1 293 KRTIETLEAKIQQMSTEAEEIDRAMN 318
                 55678899999999999888888776 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       5.6   2.6e+03      52      78 ..     101     127 ..      96     140 .. 0.68
   2 ?    6.2   4.3     0.018       8.5      10      60 ..     139     187 ..     131     242 .. 0.74
   3 ?    6.4   0.1     0.015       7.1      50      80 ..     288     318 ..     281     332 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 5.6
  Phage_GP20  52 eeLqkqieelqaknkkakaeyeakiad 78 
                 ++Lq ++ + + ++ +  +e+ea +a+
  KKY18398.1 101 QDLQHEVSKKTLALTTLRKEHEALLAA 127
                 567777777777777777777777766 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.018
  Phage_GP20  10 engkditkakldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqiee 60 
                 e+++ ++ +++++++eer  l++q++  ++q+edL  +    e+ ++ +++
  KKY18398.1 139 EKKTRVSDNEINDLTEERIRLQTQVEMLESQVEDLIRV--REEAHKQSVAN 187
                 566778999999**********************9877..44555555544 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.015
  Phage_GP20  50 dneeLqkqieelqaknkkakaeyeakiadlk 80 
                 +n++L+++ie+l+ak+++ ++e+e+  ++++
  KKY18398.1 288 ENADLKRTIETLEAKIQQMSTEAEEIDRAMN 318
                 5899999999999999999999886555555 PP

>> Cauli_DNA-bind  Caulimovirus DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.3   0.00098      0.46       3      94 ..     102     192 ..     100     218 .. 0.73
   2 ?   -0.5   0.1       2.7   1.3e+03      21      25 ..     302     306 ..     285     347 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00098
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHHTXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Cauli_DNA-bind   3 aiaseieevlsdqkkieaeikaileklgstkpekesleevaakiikdltkkidececnkeiveildkkqdkqiipskkedqkrlslvkysyP 94 
                      +++e+++    ++++++e +a+l+  g ++   ++le+ +    +++ +  +e    +  ve+l+  q +++i  ++e +k++      y 
      KKY18398.1 102 DLQHEVSKKTLALTTLRKEHEALLAAYGRQQTRCTTLEKKTRVSDNEINDLTEERIRLQTQVEMLES-QVEDLIRVREEAHKQSVANSAQYM 192
                     678999999999**************************86554444444444555555667899999.677889988888777655554444 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.7
                     HHHHH CS
  Cauli_DNA-bind  21 eikai 25 
                     +i+++
      KKY18398.1 302 KIQQM 306
                     22222 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   7.8   0.00011     0.051      61     138 ..      96     173 ..      86     175 .. 0.94
   2 ?   -0.8   0.4       2.2   1.1e+03      98     135 ..     193     230 ..     175     241 .. 0.65
   3 ?    3.6   0.2       0.1        47      62      93 ..     289     320 ..     283     345 .. 0.51

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00011
     DUF4201  61 rnkeLkrlkkkttktvhalthlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggll 138
                 r+ +L+ l++ + k+  alt+l++   +l + + +++++  ++e++ +  + e++ + +er +l++q e l++q ++l
  KKY18398.1  96 RTTHLQDLQHEVSKKTLALTTLRKEHEALLAAYGRQQTRCTTLEKKTRVSDNEINDLTEERIRLQTQVEMLESQVEDL 173
                 899*********************************************************************998875 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.2
     DUF4201  98 kelkekeerlaklrkelykvklerdklrkqneklkqqg 135
                 +++    + +a+  +e    kler++ +k+++ + ++ 
  KKY18398.1 193 QIMTMSSKLQAQGAEEARMWKLEREQWEKEKSVFIKKI 230
                 45555566677777777777888888888776655555 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.1
     DUF4201  62 nkeLkrlkkkttktvhalthlkeklhmlesel 93 
                 n++Lkr  ++   ++++++++ e  +  ++ +
  KKY18398.1 289 NADLKRTIETLEAKIQQMSTEAEEIDRAMNSM 320
                 34444444444444444444444444444444 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   2.7     0.096        45      27      77 ..     126     173 ..      94     179 .. 0.56
   2 ?    9.2   0.0    0.0031       1.5      37      78 ..     290     331 ..     274     354 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.096
     BLOC1_2  27 klNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteL 77 
                 +   +++++++ l++++    +++++l e+   lq   +q++ +e qv++L
  KKY18398.1 126 AAYGRQQTRCTTLEKKTRVSDNEINDLTEERIRLQ---TQVEMLESQVEDL 173
                 33344555555555555555555555555443333...4556666666665 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0031
     BLOC1_2  37 kklkdvaaslekkleklnekyeelqpylqqidqiekqvteLe 78 
                 ++lk+ ++ le+k+++++ + ee++  ++++ +i +++t+++
  KKY18398.1 290 ADLKRTIETLEAKIQQMSTEAEEIDRAMNSMMRIRRRLTDIT 331
                 456666677777777777777777777777777666666654 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.6      0.02       9.3      49      98 ..      90     139 ..      84     146 .. 0.85
   2 ?    1.5   9.0      0.72   3.4e+02      15      71 ..     150     206 ..     139     236 .. 0.74
   3 ?    7.4   0.2     0.011       5.1      37      75 ..     291     329 ..     281     349 .. 0.53

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.02
  TMF_TATA_bd  49 ivklmkeneelkelkkeleelekeleelqeryetlLellGeksEeveELr 98 
                   v+ ++++  l++l++e+++ +  l+ l++++e+lL  +G ++ ++  L+
   KKY18398.1  90 FVTNIARTTHLQDLQHEVSKKTLALTTLRKEHEALLAAYGRQQTRCTTLE 139
                  566778888999999*************************9988877665 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.72
  TMF_TATA_bd  15 erlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelek 71 
                  + l  e  rl++++++l++++e l + r+ea ++ v+ +++  +  +++++l+ + +
   KKY18398.1 150 NDLTEERIRLQTQVEMLESQVEDLIRVREEAHKQSVANSAQYMQIMTMSSKLQAQGA 206
                  444444456777788888888888888888888888888877777777777776655 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.011
  TMF_TATA_bd  37 rleaerdeareeivklmkeneelkelkkeleelekelee 75 
                   l++  +++++ i ++++e ee +++ +++  ++++l++
   KKY18398.1 291 DLKRTIETLEAKIQQMSTEAEEIDRAMNSMMRIRRRLTD 329
                  444444444444444444444444444444444444444 PP

>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2       1.8   8.7e+02      24      53 ..      98     127 ..      85     133 .. 0.63
   2 ?    7.0   3.9      0.01       4.9       7      85 ..     130     205 ..     124     210 .. 0.80
   3 ?    6.2   0.1     0.019       8.8      21      62 ..     291     332 ..     280     353 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.8
       Sec34  24 eqLeeleekfksvsektsslheaceqllee 53 
                 ++L++l++++++ +   ++l+++ e ll+ 
  KKY18398.1  98 THLQDLQHEVSKKTLALTTLRKEHEALLAA 127
                 456666666666666666677777777665 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.01
       Sec34   7 skeeecdelleqtdealeqLeeleekfksvsektsslheaceqlleeqkrleelaeeieekLkyFeeldpitrkLnspg 85 
                 +++ +c++l ++t+   +++++l+e+  + +++ + l+++ e+l++ +++ ++  +++ +  +y  ++ ++++kL+++g
  KKY18398.1 130 RQQTRCTTLEKKTRVSDNEINDLTEERIRLQTQVEMLESQVEDLIRVREEAHK--QSVANSAQY-MQIMTMSSKLQAQG 205
                 67899****************************************99887765..455555444.44556666666655 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.019
       Sec34  21 ealeqLeeleekfksvsektsslheaceqlleeqkrleelae 62 
                 ++++++e+le k +++s++ +++++a++++++ ++rl++++e
  KKY18398.1 291 DLKRTIETLEAKIQQMSTEAEEIDRAMNSMMRIRRRLTDITE 332
                 567788999999999999999999999999999999999887 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   3.9      0.15        69      34      63 ..     132     176 ..     100     197 .. 0.57
   2 ?    7.6   0.1     0.012       5.7      57      97 ..     289     329 ..     268     331 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.15
  Syntaxin-6_N  34 s...............tseeldetrteLrkalrsiewdledLeet 63 
                   +               + ++l e r  L+++++ +e ++edL ++
    KKY18398.1 132 QtrcttlekktrvsdnEINDLTEERIRLQTQVEMLESQVEDLIRV 176
                   122333334444433355566666667888888888888888655 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.012
  Syntaxin-6_N  57 ledLeetvriveknpskfkidekelsrrrafveevreevke 97 
                     dL++t++++e++ ++++ +++e++r  + + ++r+++ +
    KKY18398.1 289 NADLKRTIETLEAKIQQMSTEAEEIDRAMNSMMRIRRRLTD 329
                   57999999999999999999999999999998888888766 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   5.7     0.042        20     153     240 ..     114     198 ..      94     201 .. 0.76
   2 ?    6.9   0.4     0.007       3.3     115     176 ..     284     343 ..     282     355 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.042
        CorA 153 laqlrrrlvklrralapnrevlkrllakaddkllddedkeylrdlldelerllemlealrerleslqdtyssllserlNrvmkvLTvl 240
                 l++lr++   l  a  ++++  ++l     + +++d + + l + +++l+  +emle++ e l +++++   ++  +  + m+++T+ 
  KKY18398.1 114 LTTLRKEHEALLAAYGRQQTRCTTLE---KKTRVSDNEINDLTEERIRLQTQVEMLESQVEDLIRVREEAHKQSVANSAQYMQIMTMS 198
                 45555555555555555555553444...5666666666669999999999***********************************85 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.007
        CorA 115 lldeivdrlfellekleeeldeledeledstkkeilrelaqlrrrlvklrralapnrevlkr 176
                 ll+  + +l +++e+le+++++ ++e   ++ +  +++++++rrrl+ + +  a + +   +
  KKY18398.1 284 LLQFENADLKRTIETLEAKIQQMSTEA--EEIDRAMNSMMRIRRRLTDITEPCASHADSTLQ 343
                 788888999999***********9999..77888999*********9998877777766655 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   9.2      0.12        57      43     115 ..     101     173 ..      91     184 .. 0.64
   2 ?    6.7   5.0     0.015       7.2      66     117 ..     184     235 ..     175     237 .. 0.77
   3 ?    4.7   0.2     0.064        30      62      84 ..     292     314 ..     284     345 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.12
  TPR_MLP1_2  43 qkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedl 115
                 q+ ++e+ k+  ++++l++  e l  +  + ++  + +e+ +   +++ + ++e++ +l+++++ le+++edl
  KKY18398.1 101 QDLQHEVSKKTLALTTLRKEHEALLAAYGRQQTRCTTLEKKTRVSDNEINDLTEERIRLQTQVEMLESQVEDL 173
                 3456666666666666666666666666666666666666666666666667777777777777777777776 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.015
  TPR_MLP1_2  66 lnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlne 117
                 +    a++ ++ +   +++a+ +e+   w+ ++e+ eke+s + k+i dl++
  KKY18398.1 184 SVANSAQYMQIMTMSSKLQAQGAEEARMWKLEREQWEKEKSVFIKKIADLES 235
                 4445667777888888889999999999999999999999999999999876 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.064
  TPR_MLP1_2  62 lreelnelkaeiaelkaeaesak 84 
                 l+  +++l+a+i+++ +eae+  
  KKY18398.1 292 LKRTIETLEAKIQQMSTEAEEID 314
                 44444444444444444444443 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   7.7       1.1   5.2e+02      39      79 ..     145     186 ..      86     217 .. 0.63
   2 ?    5.0   0.0     0.073        35      51      83 ..     290     322 ..     276     349 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 1.1
                 HHHHHH...HHHHHHHHHHHHHHHHHHHH.HHHHHHHHH... CS
       DUF16  39 ieakvdklgeqinkleqkvekqgekikel.kveqkaqgeeln 79 
                 ++++++ l e+  +l+ +ve ++ ++++l +v+ +a ++++ 
  KKY18398.1 145 SDNEINDLTEERIRLQTQVEMLESQVEDLiRVREEAHKQSVA 186
                 334444444444444444444444444432233333333333 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.073
                 HHHHHHHHHHHHHHHHHHHHHHHHHH....... CS
       DUF16  51 nkleqkvekqgekikelkveqkaqgeelnkvde 83 
                 + l+ ++e++++ki++++ e +  ++++n++ +
  KKY18398.1 290 ADLKRTIETLEAKIQQMSTEAEEIDRAMNSMMR 322
                 457788888888888888888888887774443 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   5.8     0.095        45     317     393 ..     135     204 ..      88     238 .. 0.48
   2 ?    4.7   0.0      0.02       9.4     329     367 ..     286     324 ..     275     345 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.095
        FapA 317 Gselgtkteiev.gldepelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkee 393
                 +++l++kt+++  +++  +l e++ +l++++e le+++e+l +  ++  k      ++   + q+ ++ +   kl+ +
  KKY18398.1 135 CTTLEKKTRVSDnEIN--DLTEERIRLQTQVEMLESQVEDLIRVREEAHK------QSVANSAQYMQIMTMSSKLQAQ 204
                 2234444444443333..33333344444444444444444433222222......2333344444444444444444 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.02
        FapA 329 gldepelkeklkeleeeleeleeeleklkkkikklpklk 367
                  +++ +lk+ ++ le +++++  e e+++++++++  ++
  KKY18398.1 286 QFENADLKRTIETLEAKIQQMSTEAEEIDRAMNSMMRIR 324
                 677889999999999999999999999999988876654 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.3       1.1   5.2e+02      28      51 ..     101     124 ..      98     126 .. 0.90
   2 ?    7.0   1.2     0.013         6      31      53 ..     146     168 ..     140     169 .. 0.86
   3 ?    6.3   0.7     0.022        10      31      54 .]     286     309 ..     284     309 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  28 eeleervkeLeeeNaqLrqkveqL 51 
                 ++l+++v + +    +Lr+++e+L
  KKY18398.1 101 QDLQHEVSKKTLALTTLRKEHEAL 124
                 78999**99999999******998 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.013
                 HHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  31 eervkeLeeeNaqLrqkveqLek 53 
                  +++++L+ee  +L+ +ve+Le 
  KKY18398.1 146 DNEINDLTEERIRLQTQVEMLES 168
                 6799*****************95 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.022
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  31 eervkeLeeeNaqLrqkveqLeke 54 
                 + ++ +L++ +++L++k++q+ +e
  KKY18398.1 286 QFENADLKRTIETLEAKIQQMSTE 309
                 5578899*************9887 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.4      0.71   3.3e+02      19      45 ..     100     126 ..      89     143 .. 0.81
   2 ?    5.6   3.1     0.028        13      23      50 ..     146     173 ..     124     189 .. 0.60
   3 ?   -2.5   0.0       9.6   4.5e+03      16      35 ..     191     210 ..     181     224 .. 0.60
   4 ?    8.1   0.3    0.0047       2.2      29      58 ..     285     314 ..     282     317 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.71
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  19 ykqlkqeiaalqaelaklkaeneeLea 45 
                 +++l+ e+ +++  l +l++e e+L a
  KKY18398.1 100 LQDLQHEVSKKTLALTTLRKEHEALLA 126
                 688899999999999999999988865 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.028
                 HHHHHHHHHHHHHHHHHHHHHHHHHCC- CS
       DivIC  23 kqeiaalqaelaklkaeneeLeaevkdL 50 
                 ++ei++l++e  +l+ + e Le++v+dL
  KKY18398.1 146 DNEINDLTEERIRLQTQVEMLESQVEDL 173
                 3455555555555555555555555555 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 9.6
                 XXHHHHHHHHHHHHHHHHHH CS
       DivIC  16 llaykqlkqeiaalqaelak 35 
                 +++++ + ++++a+ ae a+
  KKY18398.1 191 YMQIMTMSSKLQAQGAEEAR 210
                 55555555555555555443 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.0047
                 HHHHHHHHHHHHHHHHHHHCC-XXXXXXXX CS
       DivIC  29 lqaelaklkaeneeLeaevkdLksdedyie 58 
                 lq e+a lk ++e Lea++++++ + + i+
  KKY18398.1 285 LQFENADLKRTIETLEAKIQQMSTEAEEID 314
                 678889999999999999999876766665 PP

>> TRAF_BIRC3_bd  TNF receptor-associated factor BIRC3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   2.3     0.023        11       3      41 ..     132     170 ..     130     177 .. 0.90
   2 ?    4.5   0.1     0.064        30      45      59 ..     293     307 ..     288     311 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.023
  TRAF_BIRC3_bd   3 ekklsaLetkvatFEnIVsVLnrEverssttieaverqr 41 
                    + ++++Le+k+++  n +  L  E  r +t++e +e q 
     KKY18398.1 132 QTRCTTLEKKTRVSDNEINDLTEERIRLQTQVEMLESQV 170
                    579*******************99999999999999885 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.064
  TRAF_BIRC3_bd  45 qekieaLekKvrqLe 59 
                    +++ie+Le K++q+ 
     KKY18398.1 293 KRTIETLEAKIQQMS 307
                    689*********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1657  (0.0924201); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        52  (0.00290033); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              38  [number of targets reported over threshold]
# CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.50
# Mc/sec: 2146.04
//
Query:       KKY18399.1  [L=151]
Description: putative 40s ribosomal protein s13 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-28   97.2   0.0    6.6e-28   96.5   0.0    1.4  1  Ribosomal_S13_N  Ribosomal S13/S15 N-terminal domain
      3e-15   56.2   0.1    4.1e-15   55.7   0.1    1.2  1  Ribosomal_S15    Ribosomal protein S15
  ------ inclusion threshold ------
      0.037   14.0   0.0      0.096   12.6   0.0    1.7  2  PAX              'Paired box' domain


Domain annotation for each model (and alignments):
>> Ribosomal_S13_N  Ribosomal S13/S15 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0   1.1e-31   6.6e-28       1      60 []       1      60 [.       1      60 [. 1.00

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 1.1e-31
                     X--SSSSSS--------S-SS--TTS---HHHHHHHHHHHHHTT--HHHHHHHHHHCCT- CS
  Ribosomal_S13_N  1 MarmhsrgkGkSgSarPyrreapsWlklskeeveelivklakkGltpSqIGviLRDqyGv 60
                     M+r+hs+gkG++ Sa Py+r+ p+W+kl++++v+++i+klakkG tpSqIGv+LRD++Gv
       KKY18399.1  1 MGRLHSKGKGIADSAIPYSRSIPTWFKLTPDQVVDTICKLAKKGATPSQIGVVLRDSHGV 60
                     ***********************************************************8 PP

>> Ribosomal_S15  Ribosomal protein S15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.1   6.9e-19   4.1e-15       5      78 ..      75     146 ..      70     148 .. 0.92

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 6.9e-19
                    HHHHSSSTT-TSSHHHHHHHHHHHHHHHHHHHHCTTT-HHHHHHHHHHHHHHHHHHHHHHHH-H..HHHHHHHHHC CS
  Ribosomal_S15   5 ikefqrhekDtGspevqiallterInnltehlkenkkDkhsrrgLlklvskRrkllkYLkrkdv..erYkkliekl 78 
                    +k ++ ++    ++++++++l+++++++++hl++n+kDk+s+ +L++++s++++l +Y+k+  v  +++k+  +++
     KKY18399.1  75 LKGNGLAP----EIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLSRYYKTVGVlpPTWKYESATA 146
                    67777788....99*************************************************9999999988876 PP

>> PAX  'Paired box' domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.6e-05     0.096      18      50 ..      29      61 ..      25      82 .. 0.89
   2 ?   -2.5   0.0      0.74   4.4e+03      54      65 ..     125     136 ..     118     139 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.6e-05
         PAX 18 lpdsirqkivelahsgvrpcvisrqlrvshgcv 50
                 pd++   i +la++g+ p +i   lr shg+ 
  KKY18399.1 29 TPDQVVDTICKLAKKGATPSQIGVVLRDSHGVA 61
                599****************************75 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.74
         PAX  54 lgryqetgsirp 65 
                 l+ry++t  + p
  KKY18399.1 125 LSRYYKTVGVLP 136
                 789999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1019.67
//
Query:       KKY18400.1  [L=457]
Description: hypothetical protein UCRPC4_g04970 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-08   34.2   0.6    1.3e-07   31.3   0.0    2.6  2  Glyco_hydro_16  Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   7.3e-12   1.3e-07      11      92 ..      61     151 ..      52     230 .. 0.84
   2 ?   -2.4   0.2      0.15   2.8e+03      20      28 ..     344     352 ..     313     407 .. 0.54

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 7.3e-12
                     GGGEEEETTSEEEEEEEE........EEEEEEEECCEESSEEEEEEEE..---STTEEEEEEEETGGTSTTEEEEE.EEETT-TTEEEEEEEB CS
  Glyco_hydro_16  11 ksavsvengetltltldk........esgsrikskksflyGkvearik..aaksaGvvtafylssedekahdEiDi.EflGndtgkvqtnvyg 92 
                     ++ +s++ng ++ + +d         +++ r++s+ s+ +G v  ++   ++   G+++af++   d+++ +EiDi E + n++++ ++++++
      KKY18400.1  61 AGLISTNNG-SVYIGVDYtnvassagRQSVRLTSSASYNHGLVILDLEhmPGGICGTWPAFWMLGPDWPTNGEIDIsEGV-NSQTTNDMTLHT 151
                     455555555.666666667777777788999************999998788889*********99**********9999.566667777774 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.15
                     SEEEEEEEE CS
  Glyco_hydro_16  20 etltltldk 28 
                     +t++l+++ 
      KKY18400.1 344 STASLSIPT 352
                     233333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3157.99
//
Query:       KKY18401.1  [L=1519]
Description: putative golgi complex component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-60  204.4   0.1    4.8e-60  202.5   0.0    2.0  2  Vps8        Golgi CORVET complex core vacuolar protein 8
    1.6e-09   37.8   2.4     0.0041   17.0   0.3    3.5  3  Clathrin    Region in Clathrin and VPS
  ------ inclusion threshold ------
      0.015   15.5   0.0       0.12   12.6   0.0    2.4  2  SesA        N-terminal domain on NACHT_NTPase and P-loop NTPa
      0.044   13.4   0.0       0.15   11.7   0.0    1.9  1  Vac_Fusion  Chordopoxvirus multifunctional envelope protein A
       0.12   13.3   0.0       0.61   11.1   0.0    2.3  1  WD40        WD domain, G-beta repeat
       0.15   12.4   0.9       0.63   10.4   0.1    2.4  2  Rx_N        Rx N-terminal domain
        2.7    9.0   6.4         29    5.9   0.6    3.7  3  TPR_14      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Vps8  Golgi CORVET complex core vacuolar protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.5   0.0   1.9e-63   4.8e-60       2     198 .]     711     906 ..     710     906 .. 0.92
   2 ?   -1.4   0.1      0.54   1.4e+03     151     184 ..    1102    1138 ..    1021    1145 .. 0.56

  Alignments for each domain:
  == domain 1  score: 202.5 bits;  conditional E-value: 1.9e-63
        Vps8   2 FlevLepyilsgklkslppevvkalvehysskgelerleelilhldpksLDldqvlklckehrLydaliYvwnkaldDYvtPlvellklirsaeeeeee 100
                 Fl+++epyi+sg++++ pp+++k lveh+ ++++++ le++i+ l+++s+D+dqv++lc++h+Ly+a+i+vw++ l+D++ Pl+ell+  r+ ++ + +
  KKY18401.1 711 FLDAIEPYIVSGEMRAFPPPAIKTLVEHFLTNHTVSDLENIICLLETSSMDIDQVTTLCRKHNLYEAYIHVWTRTLEDFTGPLEELLSMSRR-TQPNGH 808
                 9*******************************************************************************************.677888 PP

        Vps8 101 keeeeeeeeeaykvfeYlsyiLtGraYPsgeeleeeeaskakseiyslLfsgksiewpkgsgklltkeeseeepafPylrlLLkfdaeeflsvLneaF 198
                 ++e ++e++ a k f+YlsyiLtGr+YP ge+++++ a kak++iy++Lfsg+s +  ++ ++ ++++++++  +fP+lr++L+++a +f+svLneaF
  KKY18401.1 809 TNEADRERATAFKCFPYLSYILTGRQYPRGEDMPDDLAIKAKAQIYTFLFSGRSDADAPKYSSRSSSHTAANIFPFPHLRVILSLNAANFMSVLNEAF 906
                 89999999999***************************************9996554444444444555566666**********************9 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.54
        Vps8  151 sgksiewpkgsgk...lltkeeseeepafPylrlLLk 184 
                  s++s+++ +   +      +  +e +++f ylr+LL+
  KKY18401.1 1102 SQTSVTISRLLPHlhdHFLSALEEPRSQFQYLRALLE 1138
                  4444333332222333333344566667999999987 PP

>> Clathrin  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   5.1e-05      0.13      53      95 ..     740     784 ..     730     794 .. 0.79
   2 !    6.2   0.0    0.0034       8.8      71     122 ..    1018    1070 ..    1002    1075 .. 0.82
   3 !   17.0   0.3   1.6e-06    0.0041      20     133 ..    1127    1249 ..    1115    1258 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.1e-05
                 HHTT-HHHHHHTTS..S---S-TTHHHHHHHT-SSHHHHHHHHHT CS
    Clathrin  53 akyddpqeleeflk..knnnydlekvaklcekadlyeeavilykk 95 
                 ++++ +++le+++   +++++d+++v  lc+k++lye ++ ++++
  KKY18401.1 740 LTNHTVSDLENIICllETSSMDIDQVTTLCRKHNLYEAYIHVWTR 784
                 55666889999999656666****************888778887 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0034
                  S-TTHHHHHHHT-SSHHHHHHHHHTTXTHSSHSSXSSSSHCSCHHH.HTTTTT CS
    Clathrin   71 ydlekvaklcekadlyeeavilykkinefkkaisllkklkdfddai.eyaakv 122 
                   d++++++  e+a+ y+ ++ +y++ ++++++i+++ k+ + ++++ e+++ +
  KKY18401.1 1018 PDIQTLISAFEDARFYRVLKTVYRNESQYSHLIEMYFKDPEDEEEVfETLVSL 1070
                  5999*******************************766666666666887765 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 1.6e-06
                  TT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHT....T-HHHHHHTTSS---..S-TTHHHHHHHT-SSHHHHHHHHHTTXTHSSHSS.XSSSS CS
    Clathrin   20 aglleelleyLekvlkedskenpalqtallelyaky....ddpqeleeflkknnn..ydlekvaklcekadlyeeavilykkinefkkais.llkkl 109 
                  ++++++l  +Le    ++  + ++++  l+e+y+      ++ + + e++++ +    +le+++  +e  + ++ av l+ + +++k+a++ l ++l
  KKY18401.1 1127 RSQFQYLRALLEPSD-TTAIAGTKVNHYLIECYVHLmcqyNP-KHVSEYVDNIQAsdLHLERILPALESSGIIDAAVMLLARQGQVKDAMDrLKRHL 1221
                  555666666666555.33347788888888877544444396.********777767**********************************667777 PP

                  HCSCHHH....HTTTTTXXSHHHHHHHH CS
    Clathrin  110 kdfddai....eyaakvsnpelweklle 133 
                  + ++ a+    + a+ + + +  +++++
  KKY18401.1 1222 ETLEAALagimQHAEASPDAQSTDEAVQ 1249
                  7777776655555555555555555555 PP

>> SesA  N-terminal domain on NACHT_NTPase and P-loop NTPases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.5e-05      0.12      23      73 ..    1209    1259 ..    1196    1265 .. 0.91
   2 ?   -1.4   0.0         1   2.6e+03      62     115 ..    1300    1351 ..    1286    1362 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.5e-05
        SesA   23 glpeaFrevgkrLplvqetLedaksqlesskldedtesaikpvlesckeka 73  
                  + + a ++ +++L++++++L  + +++e+s + ++t++a++++l+s ++ +
  KKY18401.1 1209 QVKDAMDRLKRHLETLEAALAGIMQHAEASPDAQSTDEAVQDLLNSLDKYV 1259
                  6778999**************************************998866 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1
        SesA   62 ikpvlesckekatkleeifekvapapadsrleryrkavrslgkgskVEtLmkgi 115 
                     +++s+ ++a+++    e+ +++++ + ++ y +a+  +g  s+V+++  ++
  KKY18401.1 1300 WLGLVNSVVKAARNILPTTEECTRKKDHAPFQGYINAA--TGLRSNVQQVFTAL 1351
                  56678888888888888888888888888888888884..35666666665555 PP

>> Vac_Fusion  Chordopoxvirus multifunctional envelope protein A27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     6e-05      0.15      22      44 ..    1206    1228 ..    1197    1232 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6e-05
                  HHHHHHHHHHHHH-XXXXXXXXX CS
  Vac_Fusion   22 cckrvnealkRlEnHleTlRkam 44  
                  ++ +v++a++Rl +HleTl +a+
  KKY18401.1 1206 RQGQVKDAMDRLKRHLETLEAAL 1228
                  566899*************8776 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00024      0.61      12      37 ..     250     275 ..     237     276 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00024
                 SEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriW 37 
                 ++tsla+s d++ +a+G+++g++  W
  KKY18401.1 250 PITSLAVSADHSTIACGHENGHIFTW 275
                 5**********************887 PP

>> Rx_N  Rx N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.8   4.6e+03      18      44 ..     542     568 ..     528     569 .. 0.78
   2 ?   10.4   0.1   0.00024      0.63      18      61 ..    1205    1255 ..    1184    1259 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.8
        Rx_N  18 kllkgvkeeleklkdeLesiqavLeda 44 
                    +++++ +e+l +e  s+++v++da
  KKY18401.1 542 LFSQQLHAAIEQLDEEDASMHGVVADA 568
                 56788999999999999******9998 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00024
        Rx_N   18 kllkgvkeeleklkdeLesiqavLe....daee...rqikdeavkeWlkel 61  
                  +++ +vk+ +++lk+ Le+++a L+    +ae     q +deav+  l+ l
  KKY18401.1 1205 ARQGQVKDAMDRLKRHLETLEAALAgimqHAEAspdAQSTDEAVQDLLNSL 1255
                  7899********************966666666888888999999999887 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.044   1.1e+02       4      25 ..     596     617 ..     594     643 .. 0.86
   2 ?   -1.5   0.0       2.5   6.5e+03      10      36 ..    1119    1143 ..    1118    1146 .. 0.82
   3 ?    5.9   0.6     0.011        29       6      34 ..    1199    1227 ..    1196    1237 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.044
      TPR_14   4 llalaeallalGdpdeAiallr 25 
                 +++++ al+++Gd+ +Ai+l+ 
  KKY18401.1 596 WADRLLALMESGDFIAAIRLAT 617
                 899***************9975 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.5
      TPR_14   10 allalGdpdeAiallrralalaPddae 36  
                  +l al++p+   ++lr++l+  P+d +
  KKY18401.1 1119 FLSALEEPRSQFQYLRALLE--PSDTT 1143
                  7889999999999***9998..77765 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.011
      TPR_14    6 alaeallalGdpdeAiallrralalaPdd 34  
                  a++ +l+++G+ ++A++ l+r l++  + 
  KKY18401.1 1199 AAVMLLARQGQVKDAMDRLKRHLETLEAA 1227
                  5567899***************9986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.43
# Mc/sec: 10544.61
//
Query:       KKY18402.1  [L=1466]
Description: putative phd finger and bah domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-19   67.8   0.5    8.1e-19   67.8   0.5    3.5  3  zf-HC5HC2H_2     PHD-zinc-finger like domain
    1.3e-16   60.6   0.1      3e-16   59.4   0.1    1.7  1  BAH              BAH domain
    2.1e-15   56.8   0.6    2.1e-15   56.8   0.6    4.3  4  zf-HC5HC2H       PHD-like zinc-binding domain
    3.1e-11   42.6   2.8    3.1e-11   42.6   2.8    5.0  5  PHD_2            PHD-finger
    3.3e-07   30.1   4.3    3.3e-07   30.1   4.3    5.4  6  PHD              PHD-finger
     0.0038   17.4   2.6     0.0038   17.4   2.6    4.0  6  FYVE_2           FYVE-type zinc finger
  ------ inclusion threshold ------
        2.4    7.5  12.9        3.9    6.9   1.0    3.6  3  zf-RanBP         Zn-finger in Ran binding protein and others
        4.3    7.6   7.1       0.41   10.9   0.1    3.0  4  Myb_DNA-binding  Myb-like DNA-binding domain
        6.2    6.5  20.6        1.3    8.7   0.8    4.4  4  GATA             GATA zinc finger


Domain annotation for each model (and alignments):
>> zf-HC5HC2H_2  PHD-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   1.3       2.6   5.1e+03      57      85 ..     977    1006 ..     951    1039 .. 0.75
   2 !   67.8   0.5   4.1e-22   8.1e-19      11      96 ..    1096    1182 ..    1092    1214 .. 0.91
   3 ?   -0.4   0.1      0.61   1.2e+03      44      63 ..    1315    1334 ..    1302    1339 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.6
  zf-HC5HC2H_2   57 kCllCkkr...kGaciqCskkeCktafHvtCa 85  
                     C++C+         ++C +  C+ a H  C 
    KKY18402.1  977 PCAICSLLdlpGDELLNCRD--CRLAVHRSCY 1006
                    57777655553334567777..8888888884 PP

  == domain 2  score: 67.8 bits;  conditional E-value: 4.1e-22
  zf-HC5HC2H_2   11 GalkktsderwvHvlCallvpevsfsnvaerepvd.vekikkerlkekCllCkkrkGaciqCskkeCktafHvtCalaaglvmeled 96  
                     alk+ts ++w+H++Ca+++pe++f n a  ep + +  i++er ++ C lC+++   c+ C++++C+ +fHv Ca++ag+++ ++ 
    KKY18402.1 1096 EALKRTSGNNWTHITCAIWNPEIKFGNAALLEPSEgFGLIPRERREQVCKLCNTAGPPCVPCHSSSCNVVFHVGCAHQAGYQFGFDL 1182
                    69*****************************************************99***********************9987665 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.61
  zf-HC5HC2H_2   44 vdvekikkerlkekCllCkk 63  
                    +++++ +++ +++kC++C++
    KKY18402.1 1315 ASLSNKTSNSIEKKCYNCQT 1334
                    446777788899******97 PP

>> BAH  BAH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.1   1.5e-19     3e-16       3     114 ..     254     362 ..     252     371 .. 0.88

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 1.5e-19
                 EETTGEEEEEETTSTTEEEEEEEEEEEEETTST.CEEEEEEEEEEECGGGSTTTTHCCCTTEEEEEEEEEEEEGGGEEEEEEEEEHHHHCTECCHCHHC CS
         BAH   3 yavGdfVyfddtstdepyqirrIeeLkenakne.eaeatvlvdwflrpeetksalklrqkrElfltrqseilplaairgkcrVvllsdleeaqnylpkk 100
                 ++ +d  yf  +   epy+ +rI ++  ++++       v+v+w++rp+++  ++k+ ++r +f++ +s+i+pl++ rgkc++++ s++++++ y +  
  KKY18402.1 254 LSINDHAYFVCEPPGEPYYLARIMQFLHQRNDPnAPIDAVRVNWYYRPKDI--QRKVQDTRVVFASMHSDICPLTSLRGKCNILHISEVQDLDAYRK-- 348
                 67899999999999*********999888887724456789**********..7777777************************************8.. PP

                 STTEEEEEEEEETT CS
         BAH 101 lddtFycslvydpt 114
                   d+F ++ +yd++
  KKY18402.1 349 IRDSFWYEKLYDRY 362
                 999*********96 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       1.8   3.7e+03      29      45 ..     796     812 ..     784     816 .. 0.79
   2 ?    1.4   0.8       0.2   3.9e+02      33      67 ..     972    1007 ..     950    1037 .. 0.77
   3 !   56.8   0.6     1e-18   2.1e-15       1      89 [.    1108    1214 ..    1108    1215 .. 0.85
   4 ?    2.4   0.1     0.097   1.9e+02      20      45 ..    1310    1335 ..    1297    1340 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.8
  zf-HC5HC2H  29 kikkerkklkCylCkkk 45 
                 k++++++  +C++C+++
  KKY18402.1 796 KAAEKKRGFECKFCSTR 812
                 5677888899****987 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.2
  zf-HC5HC2H   33 erkklkCylCk...kkvGaciqCskkkCkkafHvtCak 67  
                  + k l C +C+         ++C+   C+ a H  C  
  KKY18402.1  972 RVKILPCAICSlldLPGDELLNCRD--CRLAVHRSCYG 1007
                  5666789999955423557899988..********965 PP

  == domain 3  score: 56.8 bits;  conditional E-value: 1e-18
  zf-HC5HC2H    1 HvvCalwipevvfeeekeiemeeiedvekikkerkklkCylCkkkvGaciqCskkkCkkafHvtCakeagllleee.....eeke............ 80  
                  H +Ca+w pe++f ++     e+ e++  i++er++++C+lC++    c+ C+ ++C+  fHv Ca++ag+++ ++     +  +            
  KKY18402.1 1108 HITCAIWNPEIKFGNAAL--LEPSEGFGLIPRERREQVCKLCNTAGPPCVPCHSSSCNVVFHVGCAHQAGYQFGFDlspvkS--Trrdvvstiklge 1200
                  99***********99875..9************************889**************************99665541..1345666677777 PP

  zf-HC5HC2H   81 .....klksyCkkH 89  
                       ++ ++C +H
  KKY18402.1 1201 eigsaTAAIWCLHH 1214
                  77777788888887 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.097
  zf-HC5HC2H   20 emeeiedvekikkerkklkCylCkkk 45  
                  e e+  ++++  +++ ++kCy C++ 
  KKY18402.1 1310 EPETTASLSNKTSNSIEKKCYNCQTD 1335
                  456778999999***********976 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       3.1   6.2e+03      31      36 .]     849     854 ..     838     854 .. 0.73
   2 !   42.6   2.8   1.5e-14   3.1e-11       3      35 ..     990    1022 ..     988    1023 .. 0.95
   3 ?   -4.4   6.5         8   1.6e+04       7      19 ..    1157    1171 ..    1153    1174 .. 0.79
   4 ?   -1.4   0.9      0.92   1.8e+03      16      30 ..    1327    1341 ..    1326    1342 .. 0.79
   5 ?    1.8   0.2     0.087   1.7e+02      25      35 ..    1418    1428 ..    1413    1429 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.1
       PHD_2  31 lCrrCe 36 
                 lC rC+
  KKY18402.1 849 LCHRCA 854
                 688885 PP

  == domain 2  score: 42.6 bits;  conditional E-value: 1.5e-14
       PHD_2    3 pllsCdkCsvaVHasCYGvskesdgeeWlCrrC 35  
                   ll+C  C++aVH+sCYGvs   + ++W+C+ C
  KKY18402.1  990 ELLNCRDCRLAVHRSCYGVSAARSTKKWICDTC 1022
                  79******************************* PP

  == domain 3  score: -4.4 bits;  conditional E-value: 8
       PHD_2    7 Cd..kCsvaVHasCY 19  
                  C   +C+v +H  C 
  KKY18402.1 1157 CHssSCNVVFHVGCA 1171
                  65559******9995 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.92
       PHD_2   16 asCYGvskesdgeeW 30  
                  ++CY ++++ + + W
  KKY18402.1 1327 KKCYNCQTDASPKWW 1341
                  57****999998545 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.087
       PHD_2   25 sdgeeWlCrrC 35  
                  ++++ W C +C
  KKY18402.1 1418 PKEQYWQCHKC 1428
                  34446****** PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1         1     2e+03      42      51 ..     417     428 ..     408     429 .. 0.67
   2 ?   -1.6   0.1       1.3   2.6e+03      39      51 ..     799     811 ..     792     812 .. 0.69
   3 !   30.1   4.3   1.6e-10   3.3e-07       2      51 ..     978    1024 ..     977    1025 .. 0.86
   4 ?   -3.4   0.0       4.8   9.7e+03      22      30 ..    1104    1112 ..    1104    1116 .. 0.83
   5 ?    1.3   6.9      0.17   3.3e+02       2      31 ..    1144    1172 ..    1143    1176 .. 0.85
   6 ?    3.4   0.2     0.036        71      38      50 ..    1417    1429 ..    1409    1431 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1
                 S..TBSSTTTHT CS
         PHD  42 g..ewlCekCke 51 
                 +   w C  C++
  KKY18402.1 417 RgfAWACGPCSR 428
                 2469***99975 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.3
                 HHSSTBSSTTTHT CS
         PHD  39 kpegewlCekCke 51 
                 ++++ + C+ C++
  KKY18402.1 799 EKKRGFECKFCST 811
                 4455899999975 PP

  == domain 3  score: 30.1 bits;  conditional E-value: 1.6e-10
                  BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD    2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51  
                  Ca+C+  +  ++el+ C +C+ ++H +C++++  ++   +++w+C++C++
  KKY18402.1  978 CAICSLLDLPGDELLNCRDCRLAVHRSCYGVSAARS---TKKWICDTCSN 1024
                  ******555699********************8833...447******87 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 4.8
                  SCEEETTTS CS
         PHD   22 krwfHqkCl 30  
                  ++w H +C 
  KKY18402.1 1104 NNWTHITCA 1112
                  589*****6 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.17
                  BTTTTSTTSTTSCEEEET..TTSCEEETTTSS CS
         PHD    2 CavCkkksdeeeelvqCd..gCkrwfHqkClk 31  
                  C++C+    ++   v C+  +C+  fH+ C +
  KKY18402.1 1144 CKLCNT---AGPPCVPCHssSCNVVFHVGCAH 1172
                  999999...7999****7446*********75 PP

  == domain 6  score: 3.4 bits;  conditional E-value: 0.036
                  SHHSSTBSSTTTH CS
         PHD   38 ekpegewlCekCk 50  
                    +e+ w+C kC+
  KKY18402.1 1417 TPKEQYWQCHKCH 1429
                  344559******7 PP

>> FYVE_2  FYVE-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       4.4   8.7e+03      94     106 ..     420     432 ..     412     437 .. 0.76
   2 ?   -3.2   0.2       4.7   9.3e+03      89     102 ..     798     811 ..     794     818 .. 0.72
   3 ?   -3.9   0.3       7.7   1.5e+04      88     108 ..     837     858 ..     833     864 .. 0.57
   4 !   17.4   2.6   1.9e-06    0.0038      58     105 ..     979    1027 ..     972    1034 .. 0.80
   5 ?   -4.0   0.8       8.6   1.7e+04      81      87 ..    1143    1149 ..    1134    1166 .. 0.58
   6 ?   -0.0   0.1       0.5   9.9e+02      89     103 ..    1417    1431 ..    1405    1435 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.4
      FYVE_2  94 vwlCkiCseaRev 106
                 +w C +Cs+a e 
  KKY18402.1 420 AWACGPCSRAQER 432
                 799****987664 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.7
      FYVE_2  89 nkkekvwlCkiCse 102
                  +k++++ Ck Cs+
  KKY18402.1 798 AEKKRGFECKFCST 811
                 56788888999875 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 7.7
      FYVE_2  88 enkkekvwlC.kiCseaRevkk 108
                 ++k++k wl  + C++  +++ 
  KKY18402.1 837 NSKDKKNWLTlALCHRCAILWR 858
                 5666667764245666666654 PP

  == domain 4  score: 17.4 bits;  conditional E-value: 1.9e-06
      FYVE_2   58 ilCleefkllvnskrqCldCklnvCkkCsve..nkkekvwlCkiCseaRe 105 
                    C + + l   +  +C dC+l v ++C      ++ k w+C++Cs++R 
  KKY18402.1  979 AIC-SLLDLPGDELLNCRDCRLAVHRSCYGVsaARSTKKWICDTCSNDRN 1027
                  444.457777888899************6543488999*********996 PP

  == domain 5  score: -4.0 bits;  conditional E-value: 8.6
      FYVE_2   81 vCkkCsv 87  
                  vCk C +
  KKY18402.1 1143 VCKLCNT 1149
                  3333333 PP

  == domain 6  score: -0.0 bits;  conditional E-value: 0.5
      FYVE_2   89 nkkekvwlCkiCsea 103 
                  + ke+ w C+ C+ +
  KKY18402.1 1417 TPKEQYWQCHKCHVN 1431
                  678999******976 PP

>> zf-RanBP  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.7    0.0022       4.4       2      13 ..    1014    1025 ..    1013    1032 .. 0.83
   2 ?   -0.4   0.2      0.37   7.3e+02      19      28 ..    1327    1336 ..    1320    1338 .. 0.86
   3 ?    6.9   1.0     0.002       3.9       2      12 ..    1420    1430 ..    1419    1432 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0022
                  SSSEE-SSS--E CS
    zf-RanBP    2 egdWdCskClvq 13  
                   ++W+C++C+++
  KKY18402.1 1014 TKKWICDTCSND 1025
                  689******974 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.37
                  SB-TTT--BT CS
    zf-RanBP   19 tkCvaCqapk 28  
                   kC +Cq+ +
  KKY18402.1 1327 KKCYNCQTDA 1336
                  59*****987 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.002
                  SSSEE-SSS-- CS
    zf-RanBP    2 egdWdCskClv 12  
                  e +W+C+kC v
  KKY18402.1 1420 EQYWQCHKCHV 1430
                  669******76 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1    0.0002      0.41       6      45 ..     702     742 ..     700     743 .. 0.88
   2 ?   -2.1   0.2       2.3   4.7e+03       3      16 ..     881     894 ..     880     904 .. 0.74
   3 ?   -2.7   0.0       3.7   7.4e+03      19      26 ..    1102    1109 ..    1070    1110 .. 0.62
   4 ?   -3.8   0.2       8.1   1.6e+04      30      44 ..    1317    1331 ..    1316    1332 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0002
                      HHHHHHHHHHHHHHTTCHHHHHHHHT.SS-HHHHHHHHHHH CS
  Myb_DNA-binding   6 eeEdelLleavkkhGnrWkkIaerlg.gRtekqcrsrwrny 45 
                      +eE ++++e++ k+G+   ++a+++  +  e  +  +++++
       KKY18402.1 702 KEEIKRFEEGISKYGSELHSVARHVSpTIKEARIVRYYYMW 742
                      7************************9888888787777777 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.3
                      SSBHHHHHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleav 16 
                      +W +  de L++a+
       KKY18402.1 881 AWKKKLDEELIRAL 894
                      68888888888775 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.7
                       HTTCHHHH CS
  Myb_DNA-binding   19 hGnrWkkI 26  
                        Gn+W+ I
       KKY18402.1 1102 SGNNWTHI 1109
                       57888887 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 8.1
                       HTSS-HHHHHHHHHH CS
  Myb_DNA-binding   30 lggRtekqcrsrwrn 44  
                       l ++t +++  + +n
       KKY18402.1 1317 LSNKTSNSIEKKCYN 1331
                       569******999887 PP

>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.8   0.00066       1.3       1      16 [.     806     821 ..     806     825 .. 0.94
   2 ?    5.2   0.4    0.0083        17      21      34 ..     848     861 ..     846     863 .. 0.90
   3 ?    5.4   1.1    0.0068        13       1      12 [.    1329    1340 ..    1329    1349 .. 0.88
   4 ?   -3.1   0.5       3.1   6.1e+03       1       8 [.    1425    1432 ..    1425    1435 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00066
        GATA   1 CsnCgttkTplWRrgp 16 
                 C  C t+++ +WRr+p
  KKY18402.1 806 CKFCSTRSSRQWRRAP 821
                 999***********98 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0083
        GATA  21 sLCnaCGlyykkkg 34 
                  LC  C + ++k+g
  KKY18402.1 848 ALCHRCAILWRKYG 861
                 59**********98 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0068
        GATA    1 CsnCgttkTplW 12  
                  C nC+t+ +p W
  KKY18402.1 1329 CYNCQTDASPKW 1340
                  ************ PP

  == domain 4  score: -3.1 bits;  conditional E-value: 3.1
        GATA    1 CsnCgttk 8   
                  C++C++ k
  KKY18402.1 1425 CHKCHVNK 1432
                  9****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1184  (0.0660383); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.48
# Mc/sec: 9126.71
//
Query:       KKY18403.1  [L=782]
Description: putative dna-directed dna polymerase theta [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-07   31.6   0.0    8.5e-07   29.3   0.0    2.1  1  Helicase_C  Helicase conserved C-terminal domain
    2.7e-07   30.5   0.1    6.6e-07   29.3   0.1    1.6  1  DEAD        DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.048   13.9   0.0       0.12   12.6   0.0    1.6  1  DUF4332     Domain of unknown function (DUF4332)
      0.055   13.5   0.0      0.097   12.7   0.0    1.4  1  ResIII      Type III restriction enzyme, res subunit
      0.098   13.3   0.0       0.48   11.1   0.0    2.2  1  HHH_5       Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   2.4e-10   8.5e-07      40     111 .]     330     405 ..     256     405 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 2.4e-10
                 TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.SS...HHHHHHHHTTSSSTT CS
  Helicase_C  40 gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.rn...vtsyiqriGRtgRag 111
                    va +h+ l+++ere i e++ +g  +v++at  ++ G ++p  +++ n     r+   ++ + q++GR+gR g
  KKY18403.1 330 VKGVAFHHAGLTTEERETIAEAYDRGVLKVMVATCSLAAGCNLPARRVILNGARMgRDlvgPAMLRQMRGRAGRKG 405
                 566889999***********************************666666544445445558************76 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.1   1.8e-10   6.6e-07      93     173 ..     102     181 ..      84     184 .. 0.76

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 1.8e-10
                 HHHTTCSEEEEEHHHHHHHH....HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHH CS
                 xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  93 kldngvdivvgtpgrlddll....stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdv 173
                 kl +++di + t ++   l     ++   n++q+  +++DE +++ d++++  i+ ++++l    ++g  + q+i +SATl+ dv
  KKY18403.1 102 KL-ADIDIAICTIEKANALDnsaiDE--GNIDQLGAVIVDEFHMIDDESRGYLIELMITKLL-CVSNGLDKVQIIGMSATLS-DV 181
                 23.56899999998877755443333..45*******************************3.3333336788********8.55 PP

>> DUF4332  Domain of unknown function (DUF4332)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.5e-05      0.12      52      99 ..     691     741 ..     677     750 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.5e-05
     DUF4332  52 lAdLa...rikgigeeyaeLLeaaGvdsvaeLaqrnpanLhqklkrlnrsk 99 
                 +AdL     ++ +++++a +    G++sv +L++  p++L+  +++++ +k
  KKY18403.1 691 RADLLemaTVPFVKSRMARVFYDNGLKSVHALSEADPKDLVPIMMEVQGRK 741
                 5555322278999*******************************9999665 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.7e-05     0.097     100     170 ..     102     179 ..      51     180 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.7e-05
                 ....-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T..........TTHHHHHT---SEEEEEESS-S CS
      ResIII 100 dstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk..........swreilekfkeavllglTATpe 170
                 +  +++i + ti++++a     +++ +e   d+   +i+DE H + +++          +   + + +++  ++g++AT+ 
  KKY18403.1 102 KLADIDIAICTIEKANALD---NSAIDEGNIDQLGAVIVDEFHMIDDESrgylielmitKLLCVSNGLDKVQIIGMSATLS 179
                 5568899999999999999...7777888888888************8455555563324444477778899*******75 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00013      0.48       3      38 ..     696     731 ..     693     734 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
                 HHHTSTT--HHHHHHHHTTT--SHHHHHHS-HHHHH CS
       HHH_5   3 eLlsvsGiGpktAlallsaGiesvedlaaadveeLa 38 
                 e+ +v+ +  ++A+  +++G +sv +l +ad+++L 
  KKY18403.1 696 EMATVPFVKSRMARVFYDNGLKSVHALSEADPKDLV 731
                 556899999************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 5006.28
//
Query:       KKY18404.1  [L=203]
Description: putative nadh-quinone oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-11   44.0   0.0    2.3e-11   43.7   0.0    1.1  1  FMN_red          NADPH-dependent FMN reductase
    3.7e-06   26.8   0.0    4.2e-06   26.6   0.0    1.1  1  Flavodoxin_2     Flavodoxin-like fold
    0.00011   22.4   0.1     0.0071   16.6   0.1    2.2  1  Flavodoxin_1     Flavodoxin
     0.0025   18.1   0.0      0.015   15.5   0.0    1.9  2  Flavodoxin_5     Flavodoxin domain
  ------ inclusion threshold ------
       0.13   12.3   0.0       0.29   11.2   0.0    1.6  1  Molydop_binding  Molydopterin dinucleotide binding domain


Domain annotation for each model (and alignments):
>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   6.5e-15   2.3e-11      14     145 ..      14     143 ..       3     150 .. 0.75

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 6.5e-15
                 -HHHHHHHHHHCCT-T.T-CEEEEETTTS.--..---HCHGHTCGGSHHHHHHHHHHHH-SCEEEEEEECTTCE-HHHHHHHHCHT-.SSCHCCTT-EE CS
     FMN_red  14 sntrklaewaaealkeagaevelidladlilpcalcdkdlesegqtsddvaellekiaaadaliivtPeYngsysgllKnalDrlsrtrgkkelrgKpv 112
                 +  ++lae+ ++ ++ ag  v+++++a+  lp ++++k +    ++sd      + + a da++++ P+  g+++++lK+++D ++  +   ++ gK v
  KKY18404.1  14 GHIKTLAEAEKKGIESAGGSVDIFQVAET-LPEDVLTKMHAP--PKSDYPVITPAELSAYDAVLFGIPTRYGNFPAQLKTFFDAAGQVWATGAWYGKFV 109
                 66688999999999999***********8.665366655533..3444444555789****************************************99 PP

                 EEE.EE-SSTTTTHHHHHHHHHHHHHTT-EEEEC CS
     FMN_red 113 alv.avgggrrgglraeeqlrqvlaelgaivvpr 145
                 +l+ +++g   g + ++ ++ + + + g+i vp 
  KKY18404.1 110 GLFvSTAGLGGGQESTAVAALSTFVHQGMIFVPL 143
                 6661565554444445555556666899999886 PP

>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.2e-09   4.2e-06      18     108 ..      17      97 ..       3     140 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1.2e-09
                   HCHHHHHHHHHCCCTTTEEEEEEHHCC.T-----CCCCHCCHHHHTTCHHHHHHHHHHHHCSSEEEEEEE-BTTB--HHHHHHHHHHS-TTT CS
  Flavodoxin_2  18 salaqafvealekagphevtvrdLyad.flpvlttrdlaaklayeekpadveseqiekllaadaivlqfPlwwfgvPailKgwiDrvltagf 108
                   + la+a  +++e+ag   v+++ ++++ +  vlt+      +a+++ +        ++l a da++++ P  + ++Pa+lK ++D     g+
    KKY18404.1  17 KTLAEAEKKGIESAG-GSVDIFQVAETlPEDVLTKM-----HAPPK-SDYPVITP-AELSAYDAVLFGIPTRYGNFPAQLKTFFDAA---GQ 97 
                   568888899999999.99********9999999872.....34455.55555666.7****************************73...44 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1     2e-06    0.0071       1      97 [.       7     120 ..       7     156 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2e-06
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSC..................GGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHH CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydes..................lseieeealllvvtsTfgnGdppengesffqdllelkgde 79 
                   i+++S +G+ ++lA++ +++++++g ++d++++++   +                  + e+ +++ +l++++T + G +p + ++ff++  + + + 
    KKY18404.1   7 IVFYSLYGHIKTLAEAEKKGIESAGGSVDIFQVAETLPEdvltkmhappksdypvitPAELSAYDAVLFGIPTRY-GNFPAQLKTFFDAAGQVWATG 102
                   89*************************999999987665677788888888888888899999999999999777.999999999999999998777 PP

                   GCCSTTTTEEEEEEEEEC CS
  Flavodoxin_1  80 ledgdlsgvrfavfglGd 97 
                      g++ g+ ++  glG 
    KKY18404.1 103 AWYGKFVGLFVSTAGLGG 120
                   666666676666666665 PP

>> Flavodoxin_5  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.16   5.7e+02       2      35 ..       7      40 ..       6      49 .. 0.88
   2 !   15.5   0.0   4.2e-06     0.015      39      70 ..      65      96 ..      38     116 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.16
  Flavodoxin_5  2 ilYsSrdGqTkkiaeriaeelreegelvdvedve 35
                  i++ S +G+ k+ ae+ ++ ++++g +vd+ +v 
    KKY18404.1  7 IVFYSLYGHIKTLAEAEKKGIESAGGSVDIFQVA 40
                  89999*****************999999999983 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 4.2e-06
  Flavodoxin_5 39 edlesydavvigasvyygkllpelakFvekhr 70
                   +l+ ydav++g + +yg+++ +l+ F ++  
    KKY18404.1 65 AELSAYDAVLFGIPTRYGNFPAQLKTFFDAAG 96
                  489************************98765 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.2e-05      0.29      60      93 ..     125     158 ..     116     168 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.2e-05
                      EEEEEEESSB-TTEEEEESSHCC.....S-GHCT CS
  Molydop_binding  60 evrakvtervrpGvvfmpfgwweagekggnaNal 93 
                      ++ a+++  v++G++f+p g+ +a+++ +n+N++
       KKY18404.1 125 TAVAALSTFVHQGMIFVPLGYAKAFGQLTNLNEV 158
                      678899999**************99999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1272.98
//
Query:       KKY18405.1  [L=717]
Description: putative lysine-specific histone demethylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-78  265.5   0.0    2.8e-78  264.2   0.0    1.8  1  Amino_oxidase  Flavin containing amine oxidoreductase
    6.1e-06   26.6   3.7    6.1e-06   26.6   3.7    2.8  3  HMG_box        HMG (high mobility group) box
  ------ inclusion threshold ------
       0.27   11.9   5.6        1.1    9.9   5.6    2.1  1  HMG_box_2      HMG-box domain


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.2   0.0   4.6e-82   2.8e-78     157     451 ..     204     506 ..       1     507 [. 0.92

  Alignments for each domain:
  == domain 1  score: 264.2 bits;  conditional E-value: 4.6e-82
                    HHHHHHHHHHHHHHHHHHCHTSTTTTCBHHHHTCCCCHHHHHTSCCCEETTHTHHHHHHHHHTTTTEEEETSEEEEEEEE.....ETTCEEEEETT CS
  Amino_oxidase 157 wdrliepelfaklefasglfagdpselsaklalpllwelegfggslllprgGlsqlpealaeelrgldirlntrVkeikr.....egdgvtvtled 247
                      rli+ +++a+le+a+++       + ++la ++++  ++f+g++  + gG++qlp+ l+++ ++ld+r+n+ V +i++     e ++ ++t+ed
     KKY18405.1 204 AYRLIN-WHYANLEYANAT-----NVEKLSLAGWDQDTGNEFEGEHAQVVGGYQQLPRGLWRYPKKLDVRTNKVVAKIQYgtstsEHGKARITCED 293
                    568888.9***********.....88999***************************************************999977777******* PP

                    STEEEESEEEE-S-HHHHH..SSEEESCCSHHHHHHHHHSEEEEEEEEEEEESSGGSGCSTSE.CE...........CECCCEEETTTEEEEECCE CS
  Amino_oxidase 248 gevveaDaVvvTvplgvlk..ailfsPplpdekaeairnlgfgsvnkvilefdrkfwednalg.qg...........vlvseltttlgeafissdf 329
                    gev+eaD+Vv+ +plgvlk   i f+Pplp++k+ ai +lgfg +nk+il fd++fw+ +  + +g              ++   ++g+ +++  +
     KKY18405.1 294 GEVFEADKVVLSAPLGVLKrqSIAFDPPLPEWKQGAISRLGFGLLNKLILVFDEPFWDIER-DmFGllhgcspgtdgSRQEHYRAGRGKFYLF--W 386
                    **********************************************************988.2233333455556558888888888888888..9 PP

                    CCCSTTTEEEEEEEEECHHHHHHHTTS-HHHHHHHHHHHHHHHHT.GTSSTCSEEEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCHHCSTTEEE CS
  Amino_oxidase 330 psrappgkglvllvyvggdaaneleslsdeelvqavlrdLrklfg.eevpepkatlvtrWhtdplargsysyvsvgpghedydplakpegdprlff 424
                    +  +++g ++ l+++++gdaa+e e +sd +l+++++ +Lr++f+ ++vp+p +++vtrW++dp+a+gsys+v++g++++dyd +akp  +++lff
     KKY18405.1 387 NCIETSGLPV-LIALMAGDAAHEAERASDRDLIEECMGHLRRVFKdNKVPDPLEAIVTRWKSDPFAGGSYSFVAAGSEPQDYDLMAKP--IDNLFF 479
                    9999999999.*****************************************************************************..****** PP

                    .SGGGCTTTTTSHHHHHHHHHHHHHHH CS
  Amino_oxidase 425 AGehtsreypgtvegAilSGlraAari 451
                    AGe+t+ ++p+tv+gA+ SGlraAa++
     KKY18405.1 480 AGEATCGTHPATVHGAYISGLRAAAEV 506
                    *************************98 PP

>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.075   4.5e+02       6      23 ..     596     613 ..     592     618 .. 0.89
   2 !   26.6   3.7     1e-09   6.1e-06      14      68 ..     616     673 ..     613     674 .. 0.90
   3 ?   -3.7   0.9         3   1.8e+04      35      52 ..     676     693 ..     675     695 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.075
                 -HHHHHHHHHHHHHHHHS CS
     HMG_box   6 safflfskeqraklkaen 23 
                 + f+l+ k++ a++k+++
  KKY18405.1 596 NPFLLYQKDHWAEVKEQC 613
                 89*************997 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 1e-09
                 HHHHHHHHHSTTS-...HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box  14 eqraklkaenPelk...naeiskklgekWkalseeeKkkYeekaekekaryekekpey 68 
                 +++a+ k++nPe       ei   lg++W++ s+++K++Y ++ ++ k++ ek+++++
  KKY18405.1 616 QKQATSKSKNPETAkatRDEIRIALGAMWRDASDDAKRPYVDETKRNKEENEKAIKDW 673
                 6778889999987655578************************************999 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 3
                 HHHHHHHSHHHHHHHHHH CS
     HMG_box  35 lgekWkalseeeKkkYee 52 
                 l+++W   + e+K ++e+
  KKY18405.1 676 LAREWDRRTWEVKDEWEK 693
                 678999999999999987 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   5.6   0.00019       1.1       5      72 ..     592     673 ..     587     674 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00019
                 -SS--HHHHHHHTTHHHHHHH...........T--...-SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-SS-- CS
   HMG_box_2   5 kaarnAYalfvqemipelkrk...........Gnp...viglaevsklcsekWkalseeeKekYeekAkedkkrydrealty 72 
                 k   n ++l+ ++ ++e+k++            np    +   e+  +++  W+  s++ K +Y ++ k  k++ ++  +++
  KKY18405.1 592 KSGINPFLLYQKDHWAEVKEQcdkqkqatsksKNPetaKATRDEIRIALGAMWRDASDDAKRPYVDETKRNKEENEKAIKDW 673
                 666899***************999999999984555556677899999*************************999877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.48
# Mc/sec: 4451.69
//
Query:       KKY18406.1  [L=305]
Description: putative glycoside hydrolase family 32 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-12   47.7   0.0    1.9e-12   47.4   0.0    1.1  1  Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal dom
      5e-06   26.6   0.0    7.6e-06   26.0   0.0    1.3  1  Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal


Domain annotation for each model (and alignments):
>> Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   2.1e-16   1.9e-12     201     303 ..       3     109 ..       1     111 [. 0.83

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 2.1e-16
                      EEEEEEEC.STTTTTTEEEEEEEEEETTTTEEEECCCCCEESBSSSS-EEEEEECC..TTTCEEEEEEES-TTTHCCCCC....CTEE-EE--E CS
  Glyco_hydro_32N 201 klvlkvspqgledntsqdyyfigkfdaekkkftadeeelkelDyGkdfYAsqtfed..edkrriligWmgewdseeadvp...ekgwagalslp 289
                      +++++++p g   ++s ++yf g+f  ++++fta ++ ++  D  kd YA q f+   +++ ++ ++W+++w+++ + vp    +gw++a+slp
       KKY18406.1   3 VMMISINP-GSPLGGSITQYFPGDF--NGTHFTAVDGATRFTDFAKDNYAGQFFYGipATEPQVSVAWASNWQYT-NLVPtgdLEGWRSAMSLP 92 
                      56777888.445699**********..9****999*********************955559************6.888889889********* PP

                      EEEEES-...TSSSEEE CS
  Glyco_hydro_32N 290 Reltlkd...sgkkLvq 303
                      R   l++   sg +Lv+
       KKY18406.1  93 RIQYLTNatrSGYDLVS 109
                      *7666443345555655 PP

>> Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   8.5e-10   7.6e-06      48     145 ..     163     264 ..     120     278 .. 0.68

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 8.5e-10
                      TEEEEEEEES...SS--EEEEEETTTTEEEEE-TTS.G...GTTT----..EEEE---.......-EEEEEEEETTEEEEEET.TTEEEEEE-- CS
  Glyco_hydro_32C  48 gpfglkvlas.edleeettiyydpsrsslvvdRtks.getdfkndfasg..esaplel.....dgklkLrilvDkssvEvFvndGrtaiTsrvy 132
                      g++ +++++s     e+++++  p  s l+++R k+ g   f+n f ++     +l +     + + +L  ++D+s++E+F n+G  a T  v+
       KKY18406.1 163 GDINMTLFSSiS--GESISLGQLPLGSDLFLNRGKTyG---FDNVFFTDkfFVTNLIDssqgsTVDFRLEGVYDRSLLEIFCNGGIRAGTISVF 251
                      455555555532..355666666778999*******65...6666666634444444476443338**************************** PP

                      ..TTTTEEEEEEE CS
  Glyco_hydro_32C 133 Ptedstgirlfsn 145
                      P++  + i + + 
       KKY18406.1 252 PEQLLDTIVIKTG 264
                      *976666665333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2157.95
//
Query:       KKY18407.1  [L=239]
Description: putative l-a virus gag protein n-acetyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-10   39.3   0.1    5.2e-08   33.1   0.1    2.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
      1e-09   38.7   0.1    1.7e-09   37.9   0.1    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.7e-07   31.2   0.1      4e-06   26.8   0.1    2.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    2.4e-05   24.2   0.4       0.18   11.8   0.0    2.6  2  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.1   1.2e-11   5.2e-08      15     117 .]      46     132 ..      32     132 .. 0.73

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.2e-11
                     HHHHHHHHH.HHHHHHSTTCEEEEEEETTEEEEEEEEEEEET.TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHH CS
  Acetyltransf_1  15 pnedaseee.feesfsleaegllvaeedgeliGfisllkipd.ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveednda 107
                     p++   +++  +++    + ++ +   +g+liG +  +  ++   + ++yi  laV++eyrg G++++L+      a+e      ++    +n+ 
      KKY18407.1  46 PYSIYVYRYfLYQW---GDLCFMATDQNGNLIGVVVSKLEQHrGGPMRGYIAMLAVREEYRGLGIATKLV------ALET-----EI----SNTS 122
                     33334444433344...34466669999**************97789**********************8......3333.....33....6777 PP

                     HHHHHHHTTE CS
  Acetyltransf_1 108 airlYeklGF 117
                     a++lYe+lGF
      KKY18407.1 123 AMKLYERLGF 132
                     8888888887 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.1   3.8e-13   1.7e-09       5      74 ..      63     132 ..      48     134 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 3.8e-13
                     EEEEEET.TEEEEEEEEEEES.......TCTEEEEE-GGGTTSSHHHHHHHHTTSEEEEEEEEETHHHHHHHHHHTTE CS
  Acetyltransf_7   5 vfVaedd.gkivGfialslld.......aeitrlaVdpeyrgkGiGraLleaaekgiileqlelnaekaikfYeklGF 74 
                     +f a d+ g+ +G ++ +l++       ++i  laV++eyrg Gi+++L++++ +       e +++ a k+Ye+lGF
      KKY18407.1  63 CFMATDQnGNLIGVVVSKLEQhrggpmrGYIAMLAVREEYRGLGIATKLVALE-T-------EISNTSAMKLYERLGF 132
                     455555558888987777776999999889999*****************972.1.......2333378********* PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1     9e-10     4e-06      29     107 ..      60     133 ..      47     142 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 9e-10
  Acetyltransf_10  29 gealllvaeeggkivGvi..elrdgs......hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFk 107
                      g+  +++ +++g+++Gv+  +l++++      +i++l+V++eyrg Gi+++L+  +e+e+            +++ a ++Ye+lGF 
       KKY18407.1  60 GDLCFMATDQNGNLIGVVvsKLEQHRggpmrgYIAMLAVREEYRGLGIATKLVA-LETEI------------SNTSAMKLYERLGFL 133
                      67889999**********88664444589***********************85.45554............344666777777765 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00011      0.48      21      44 ..      90     113 ..      78     114 .. 0.90
   2 !   11.8   0.0     4e-05      0.18      61      80 ..     116     135 ..     112     143 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00011
                 TSSEEEEEE-GGG-SSSHHHHHHH CS
        FR47  21 ggelgalqvlpehrrrGlgsrlvk 44 
                  g++ +l v++e r+ G +++lv+
  KKY18407.1  90 RGYIAMLAVREEYRGLGIATKLVA 113
                 59********************96 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 4e-05
                 EETT-HHHHHHHHHHT-EEE CS
        FR47  61 vvasNtpsirlyeklGfeki 80 
                 + +sNt + +lye+lGf   
  KKY18407.1 116 TEISNTSAMKLYERLGFLRS 135
                 6789*************654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.34s 00:00:00.86 Elapsed: 00:00:00.53
# Mc/sec: 1364.55
//
Query:       KKY18408.1  [L=735]
Description: putative gtpase activating protein sar1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-58  196.8   0.6    7.5e-58  195.7   0.1    1.9  2  RasGAP           GTPase-activator protein for Ras-like GTPase
    3.8e-31  108.1   5.3    3.8e-31  108.1   5.3    2.9  4  RasGAP_C         RasGAP C-terminus
  ------ inclusion threshold ------
        4.3    8.0   9.8         19    5.9   1.2    3.1  2  YabA             Initiation control protein YabA


Domain annotation for each model (and alignments):
>> RasGAP  GTPase-activator protein for Ras-like GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1         1     6e+03      23      52 ..      33      61 ..      13      71 .. 0.60
   2 !  195.7   0.1   1.2e-61   7.5e-58       2     208 .]     150     357 ..     149     357 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1
      RasGAP 23 nsvvsklleeytkrpegqeyLkkilkpllq 52
                 ++ s++ ++++   +  +yL++ ++ l+q
  KKY18408.1 33 AKISSQSKKNFVLE-KDVRYLDSRIALLIQ 61
                34555555666666.666666666655555 PP

  == domain 2  score: 195.7 bits;  conditional E-value: 1.2e-61
      RasGAP   2 iseliklElessenpndllrsnsvvsklleeytkrpegqeyLkkilkpllqkilekedlnlelDPrkiyeelkkkkesktgkk.sessgkksekeasel 99 
                 ++++++++++++ ++++llr+n+ vs+++++yt+r+ gq++Lk++l++ +++++e +d +le++P k+ye+++++ e+ tg+    +++ ++++ea  +
  KKY18408.1 150 FQSVLTYQFDNTPEYSSLLRQNTPVSRMMTTYTRRGPGQSFLKEVLAEKINSLIELKDVDLEINPLKVYESMVRQIEEDTGQLpAYLPKAVTAEEAAAN 248
                 8999***********************************************************************9999998657899*********** PP

      RasGAP 100 ekvsqmleknldkLkelvneildsIfksleqlPvgiRiickqirekvkekfpdaseeeilnligsflflrfliPaivnPklfglvdkqiseeqrrnLtl 198
                 e+v+ ++e +l+ L e+++ +l++I+  le+ P+giR+ickqir ++++k+pda++++i++lig+f+flrf++Paiv+Pk ++l+d +++e+ rr+Lt 
  KKY18408.1 249 EQVQAIIEPRLKMLTEIAEGFLSTIIDGLEETPYGIRWICKQIRSLSRRKYPDAQDQTICTLIGGFFFLRFINPAIVTPKSYMLIDALPDEKPRRTLTY 347
                 *************************************************************************************************** PP

      RasGAP 199 iaKllqnlan 208
                 iaK+lqnlan
  KKY18408.1 348 IAKMLQNLAN 357
                 ********97 PP

>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.3      0.63   3.7e+03      53      81 ..      29      57 ..      14      95 .. 0.56
   2 ?   -2.4   0.1      0.83     5e+03      20      42 ..     211     233 ..     191     263 .. 0.59
   3 ?   -1.6   0.1      0.46   2.7e+03      78      96 ..     346     369 ..     343     386 .. 0.60
   4 !  108.1   5.3   6.3e-35   3.8e-31       2     136 ..     536     655 ..     535     656 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.63
    RasGAP_C 53 esleetlktLseknnylesqlesYkayie 81
                + l++ +++ s+kn  le++++++++ i 
  KKY18408.1 29 RDLKAKISSQSKKNFVLEKDVRYLDSRIA 57
                33333333333444445555555544444 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.83
    RasGAP_C  20 visrennyqellneIakdirnkg 42 
                  i+    y++++ +I++d  ++ 
  KKY18408.1 211 EINPLKVYESMVRQIEEDTGQLP 233
                 45666778899999988876554 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.46
    RasGAP_C  78 ayienvleqlkkkk.gk....lpf 96 
                 +yi ++l++l++k  ++    + +
  KKY18408.1 346 TYIAKMLQNLANKPsYAkepyMAK 369
                 699999999999963335555333 PP

  == domain 4  score: 108.1 bits;  conditional E-value: 6.3e-35
    RasGAP_C   2 velkkkalenlkeLeelgvisrennyqellneIakdirnkgrlrekrkeElesleetlktLseknnylesqlesYkayienvleqlkkkkgklpfskqy 100
                 v+++++++e l +L+++gv+++++++  l +e++++++++g+l++k+ eE+++lee++kt++++n+yl  qle+Yk+y++nv++q++ k+         
  KKY18408.1 536 VRKGIRTMELLSQLQDMGVVDKSDDFSLLRDEVEQELAHLGSLKDKVVEETRKLEEVYKTIRDHNSYLVGQLETYKSYLHNVRSQSEGKQ--------- 625
                 789**********************************************************************************99994......... PP

    RasGAP_C 101 fkkrelkksgklpkfgsykysakqLeekgVLleieg 136
                       +k++k +++g+yk++++qLe++gV++ +++
  KKY18408.1 626 ------RKQQKHQELGPYKFTHQQLEKEGVIKRSNV 655
                 ......56788899******************9987 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   1.2    0.0032        19      12      67 ..      16      70 ..       9      96 .. 0.74
   2 ?    5.1   1.8    0.0059        35       5      65 ..     567     633 ..     555     649 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0032
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH............XXXXXXXXXXXXXXX CS
        YabA 12 eleeqleelleeleelkeelaelleenaeLeleneklrerl............eeeekkekekkkels 67
                e++++l++ +++l++lk+++++  ++n  Le + + l +r+            +             +
  KKY18408.1 16 EISDDLAKAQKSLRDLKAKISSQSKKNFVLEKDVRYLDSRIalliqnrmaledQ-------------N 70
                57789999****************************999996665443222111.............1 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0059
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH......XXXXXXXXXXXXX CS
        YabA   5 elfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerl......eeeekkekekkke 65 
                 e+ ++l++l +  ++++ee ++l+e  +++ ++n+ L  + e+ ++ l      +e ++++++k++e
  KKY18408.1 567 EVEQELAHLGSLKDKVVEETRKLEEVYKTIRDHNSYLVGQLETYKSYLhnvrsqSEGKQRKQQKHQE 633
                 3444444555555555555555555555555555555555555555556555432223333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (735 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1080  (0.0602376); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.49
# Mc/sec: 4527.95
//
Query:       KKY18409.1  [L=188]
Description: hypothetical protein UCRPC4_g04945 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.57
# Mc/sec: 985.22
//
Query:       KKY18410.1  [L=254]
Description: putative proteasome subunit alpha type-6 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-48  163.1   0.0    6.8e-48  162.7   0.0    1.2  1  Proteasome      Proteasome subunit
    4.3e-13   48.7   0.3    8.3e-13   47.8   0.3    1.5  1  Proteasome_A_N  Proteasome subunit A N-terminal signature
  ------ inclusion threshold ------
       0.17   11.1   0.0       0.25   10.5   0.0    1.2  1  IF-2B           Initiation factor 2 subunit family


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.7   0.0   1.1e-51   6.8e-48       6     190 .]      36     220 ..      31     220 .. 0.95

  Alignments for each domain:
  == domain 1  score: 162.7 bits;  conditional E-value: 1.1e-51
                 EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHCTTTTT CS
  Proteasome   6 tvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrsgrrpf 104
                 t+vG+kgk+++v+ ++k+++  +kl+++s+v++if++++ +g++++G++aDar+ v+rar ea ++r++yg+++p+++l++r+a+  q+ytqr+++rp+
  KKY18410.1  36 TSVGVKGKNCAVVLSQKKVP--DKLIDPSSVSHIFQLSPSVGCVMTGSIADARAAVDRARGEAGEFRYKYGYEMPCDVLAKRLANINQVYTQRAYMRPL 132
                 99******************..***************************************************************************** PP

                 SEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHH....STTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEEE CS
  Proteasome 105 gvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekey....kedltleeavelavkalkealerdklsgknievavi 190
                 gv++ ++++d+e g +Ly++dp+G y+++k a+a G ++++a + lek++        + ++ vel +++l+ +l  d ++++++ev+++
  KKY18410.1 133 GVATTLISLDDEYGTQLYKCDPAGYYVGYK-ATASGPKQQEALNHLEKRLknkdYAPGSWKDVVELGISTLSTVLSVD-FKKGELEVGIV 220
                 *****************************8.*****889***********8444444688999*************77.*******9986 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.3   1.4e-16   8.3e-13       1      23 []       7      29 ..       7      29 .. 0.99

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 1.4e-16
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YDr++t+FS +GRL+QVEYA+kA
      KKY18410.1  7 YDRHITIFSDQGRLYQVEYAFKA 29
                    **********************9 PP

>> IF-2B  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   4.2e-05      0.25     145     184 ..      40      81 ..      36      86 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.2e-05
                 THHHTHHHHHHHTTXEEEEEEGGGHHHHHHC..TESEEEEEX CS
       IF-2B 145 lqGrltakeLvqagipvtlitdsavayvmse..evdkvivGA 184
                 ++G+ +a+ L+q+++p +li  s+v+++++   +v +v+ G 
  KKY18410.1  40 VKGKNCAVVLSQKKVPDKLIDPSSVSHIFQLspSVGCVMTGS 81 
                 589***************************9999*****995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.56
# Mc/sec: 1365.71
//
Query:       KKY18411.1  [L=437]
Description: putative proteasome subunit alpha type 6 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-22   78.0   0.2    6.5e-22   77.1   0.2    1.5  1  DUF2373       Uncharacterised conserved protein (DUF2373)
  ------ inclusion threshold ------
      0.027   14.5   0.3      0.085   12.9   0.3    1.8  1  NOT2_3_5      NOT2 / NOT3 / NOT5 family
      0.049   13.7   0.7       0.15   12.1   0.7    1.8  1  Complex1_LYR  Complex 1 protein (LYR family)
       0.68   10.6   4.7        1.7    9.3   4.7    1.6  1  MDMPI_N       Mycothiol maleylpyruvate isomerase N-terminal d


Domain annotation for each model (and alignments):
>> DUF2373  Uncharacterised conserved protein (DUF2373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.2   1.5e-25   6.5e-22       1      62 [.     171     233 ..     171     234 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 1.5e-25
     DUF2373   1 eYLiqfykdrsnWKFsKqkQnwLlkhlfdaeeipseyfellleYlkglkGg.arerlleeake 62 
                 +YL+q++++r++WKF+K+k++wLlkh+f++  +ps+y+++l +Yl gl+G+ a+ rl + a+e
  KKY18411.1 171 QYLSQYHESRDTWKFNKNKETWLLKHIFSTADLPSSYDKALATYLGGLRGEsAKSRLAQGATE 233
                 6**************************************************9*****998875 PP

>> NOT2_3_5  NOT2 / NOT3 / NOT5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   1.9e-05     0.085      61      92 ..     166     197 ..     162     215 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.9e-05
    NOT2_3_5  61 qgtleqllAakeLkkrsWryhkelktWflree 92 
                 + +  q+l+    ++  W+++k+++tW+l++ 
  KKY18411.1 166 PHSALQYLSQYHESRDTWKFNKNKETWLLKHI 197
                 5678899999999999**************95 PP

>> Complex1_LYR  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.7   3.4e-05      0.15      14      39 ..     249     274 ..     247     285 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.4e-05
  Complex1_LYR  14 arkfpdyntreyfrrriRdeFrknkh 39 
                   +++ +d+ tr+ +r+++R++F++n  
    KKY18411.1 249 SQSMDDPATRDAYRAEARKRFKRNHE 274
                   678899*****************966 PP

>> MDMPI_N  Mycothiol maleylpyruvate isomerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.7   0.00038       1.7      40     121 ..     219     300 ..     218     313 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00038
     MDMPI_N  40 rsaralaaalaaegaesalardaaaalvtaadaeavdlaaslapeallaafraavtrlaaalaalppdaiadrlgipggprs 121
                 r ++a ++++ ++++e++ ++d++a  ++a + ++  + + +  ++ +++f++ +++++++l+  +++++ +     + +r+
  KKY18411.1 219 RGESAKSRLAQGATEEVSNVDDHLASTSQASQSMDDPATRDAYRAEARKRFKRNHEQFLDDLEKQEAEEPDPDRQRLLARRR 300
                 67889999***********************9999999999999************************99988833333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1661  (0.0926432); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.07u 0.39s 00:00:01.46 Elapsed: 00:00:00.56
# Mc/sec: 2348.60
//
Query:       KKY18412.1  [L=420]
Description: putative actin patch protein 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-33  115.5   0.1    2.1e-33  114.6   0.1    1.5  1  DUF2183   Uncharacterized conserved protein (DUF2183)


Domain annotation for each model (and alignments):
>> DUF2183  Uncharacterized conserved protein (DUF2183)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   0.1   1.2e-37   2.1e-33       1      99 []     270     370 ..     270     370 .. 0.97

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 1.2e-37
     DUF2183   1 ffYvSaspwnlyplleeFleenglPkgslllrdls.ltlksllkek..staehKraeiekiletfperkfiliGDsgqkdpeiYaeiakefpeqikaiy 96 
                 +fY+Sasp+nlyp+l++Fl e+ +P+g+l+lrd s +++ ++lk+   + +++K+++i+ki++++p+r+fi++GDs+q+dpe+Yaei++++ + i+ai+
  KKY18412.1 270 WFYLSASPYNLYPFLNQFLAEY-YPPGTLILRDNSwQNIGGVLKSLtqGVQAYKVNRIQKIHKWLPKRRFICVGDSTQSDPEAYAEIYRKYEGFIQAIF 367
                 8*********************.************99*******555599************************************************* PP

     DUF2183  97 IRd 99 
                 IR+
  KKY18412.1 368 IRK 370
                 **6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.76
# Mc/sec: 1677.85
//
Query:       KKY18413.1  [L=1242]
Description: putative snare-dependent exocytosis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     9e-118  393.4   0.0   1.4e-117  392.7   0.0    1.3  1  Lgl_C        Lethal giant larvae(Lgl) like, C-terminal
      1e-08   35.3   0.0        1.7    9.0   0.0    6.5  7  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
      3e-06   27.8   0.5       0.32   11.9   0.0    5.5  5  WD40         WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> Lgl_C  Lethal giant larvae(Lgl) like, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  392.7   0.0  2.4e-121  1.4e-117       2     393 .]     529     921 ..     528     921 .. 0.94

  Alignments for each domain:
  == domain 1  score: 392.7 bits;  conditional E-value: 2.4e-121
                 --EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTSEE CS
       Lgl_C   2 vevksvslaaetlElavaletGeVvvfkfgknknfknkeksgaleleqkrlqlknskeklldisdrakpslkegflPvtllnlkqgevsalkvSniGFv 100
                 ++v+++s+++ ++El+v+l +GeV++f++++n+ ++ ++ +++ +         + ++ l++is+ra+p+lkegflP+tll+ ++g+v+al +S++GFv
  KKY18413.1 529 IQVSNMSMSGASGELSVGLLSGEVAIFRWNTNRHPG-RDLPAEPN---------EGPGRLTNISSRADPGLKEGFLPLTLLDERRGPVTALRHSDVGFV 617
                 79********************************99.44444444.........45******************************************* PP

                 EEEETTSEEEEEETTTTEEEEEEEGGG...............T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEE CS
       Lgl_C 101 AigyesgslviiDlRGPaviynenise.............kllskeksskvttieFsvmelggdgyssilllvGtnkGelltfkilPessGrfevefad 186
                 A+gy +gs++i+DlRGPa+i++++ s+             +  + ++  ++t++eF+v +l++++yssi l+vGt+ G +ltfkilP+ +G f+++fa+
  KKY18413.1 618 AVGYGNGSIAIVDLRGPALIHTASTSDfvpkskrgsiirsNSQTPVQDDHPTCLEFGVFTLEDEDYSSIALFVGTKSGSVLTFKILPARNGTFSASFAG 716
                 ***************************99999888776665556667777777*********************************************9 PP

                 EE...--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTS CS
       Lgl_C 187 kt...aaddskilkiasieketgesalAtiskmqklskglvveglvvatskkdirvikpakskethksfedellcsaisvvkteekkkgivlvaltkdg 282
                      +   s+++++ +ie++tg+ a+A+++++ +l++g  ++g+++a++++++r++kpa+sk++hk f+d ++c +++v ++e+  +g ++v ++ dg
  KKY18413.1 717 LSptaDSVPSPVIALHPIEASTGNPAFASQAAVGGLQHGHFIQGALIAVTASSMRIFKPATSKGAHKTFDD-IICYSAAVSRYED--QGSAVVGVFGDG 812
                 98655666789***********************************************************9.9999999977776..9*********** PP

                 EEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES----..------B---TT----------TTTS-SS-----HHHHH CS
       Lgl_C 283 evkvlslPsLkeikkvklpealdarrlsessilrnGdilvrlgkleaallsvlgksktskeeeetdtlynekaaipprPqvsslqWirGtqyvskedLd 381
                 +v+++s+PsLkei +v++  +ld+r+ s+  i+++Gdi+  +g++e+a+++++g + +    ++ d+lyn++a++pprP++s+lqWi+Gtqy++++dLd
  KKY18413.1 813 TVRAFSIPSLKEIGHVSVGLKLDPRQFSSAIISPTGDIIAPTGPSEMAIMNIWGTGIE--PWNTGDQLYNPQAKVPPRPTISNLQWISGTQYITPADLD 909
                 *******************************************************988..999************************************ PP

                 HHHH-TT----S CS
       Lgl_C 382 lLigGpnRppsk 393
                 +LigGp+Rppsk
  KKY18413.1 910 ILIGGPDRPPSK 921
                 ***********9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0     0.008        48      33      61 ..      42      70 ..      32      77 .. 0.82
   2 !    4.2   0.0    0.0087        52      35      78 ..      90     131 ..      73     141 .. 0.78
   3 ?   -1.8   0.0      0.67     4e+03       8      62 ..     155     209 ..     152     225 .. 0.70
   4 !    9.0   0.0   0.00028       1.7      42      82 ..     249     289 ..     238     320 .. 0.88
   5 ?    0.5   0.0      0.12   7.4e+02      52      75 ..     488     511 ..     480     560 .. 0.84
   6 !    6.6   0.0    0.0016       9.5      36      79 ..     601     643 ..     595     675 .. 0.81
   7 ?   -1.6   0.0      0.56   3.3e+03      46      79 ..     798     831 ..     796     840 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.008
  ANAPC4_WD40 33 eedkedsevrsLaWkpdgklLavaysdge 61
                 ++ + +s++++La+ p  +lLav++s+++
   KKY18413.1 42 ARYGVNSQISALAYDPVQSLLAVGTSESQ 70
                 56677899*****************9876 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0087
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsv 78 
                    ++s++r+L++   g+ L  + s++ + +++ e+ k++ s+  
   KKY18413.1  90 GPRKSSIRNLRF--CGNKLISVDSKNDICIFSLEENKILASYAP 131
                  556778888866..7889999******************99865 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.67
  ANAPC4_WD40   8 DLiAlatedgellvfRlngqrvwtl.eedkedsevrsLaWkpdg.klLavaysdgev 62 
                  D++A+  ++ +l +fR+   ++w   +  ++   v  L+++p +   L v+y +g+v
   KKY18413.1 155 DIVAYDLDRLQLTAFRIP--NLWMQmNPRARIMPVITLEFHPRDiGTLLVGYPEGAV 209
                  888888888888888874..3444325667777888888888763578888888877 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.00028
  ANAPC4_WD40  42 rsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek 82 
                  ++  W+p g+++  a++d ++ + d ++g+vv++ + ++++
   KKY18413.1 249 TQATWHPTGTFILTAHDDASLVFWDPKDGRVVEARTLQDTH 289
                  6778*****************************99988774 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 0.12
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhs 75 
                  +   a++dg+vr+ da +g+ +++
   KKY18413.1 488 IVQTAHADGTVRVWDAGHGDEIEN 511
                  566789999999999999987765 PP

  == domain 6  score: 6.6 bits;  conditional E-value: 0.0016
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                  ++ + v++L+ +  g + av+y +g++ ++d     ++h+ s++
   KKY18413.1 601 ERRGPVTALRHSDVG-FVAVGYGNGSIAIVDLRGPALIHTASTS 643
                  566778888877666.89***************99999998776 PP

  == domain 7  score: -1.6 bits;  conditional E-value: 0.56
  ANAPC4_WD40  46 WkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                  ++ +g+  + ++ dg+vr +++ s k + ++sv+
   KKY18413.1 798 YEDQGSAVVGVFGDGTVRAFSIPSLKEIGHVSVG 831
                  567788888899**********999999988875 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.47   2.8e+03      11      29 ..      48      67 ..      38      79 .. 0.73
   2 ?   -0.6   0.0       0.5     3e+03       9      32 ..     133     154 ..     123     160 .. 0.73
   3 !   11.9   0.0   5.3e-05      0.32      14      38 .]     249     273 ..     233     273 .. 0.85
   4 !    7.6   0.0    0.0013       7.7      27      38 .]     491     502 ..     482     502 .. 0.85
   5 ?   -1.8   0.0       1.2   7.1e+03      14      35 ..     791     815 ..     773     817 .. 0.57

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.47
                SSEEEEEEETTSSEEEEE.E CS
        WD40 11 ssvtslafspdgawlasG.s 29
                s +++la++p +++la G s
  KKY18413.1 48 SQISALAYDPVQSLLAVGtS 67
                3499999********99843 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.5
                 SSSSEEEEEEETTSSEEEEEETTS CS
        WD40   9 GHssvtslafspdgawlasGsdDg 32 
                 G+  +tsl ++p+ ++ + G  +g
  KKY18413.1 133 GQ--ITSLTTDPNLDYAMIGLQNG 154
                 44..*********99977775555 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 5.3e-05
                 EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  14 tslafspdgawlasGsdDgtvriWd 38 
                 t   ++p g+++++++dD ++ +Wd
  KKY18413.1 249 TQATWHPTGTFILTAHDDASLVFWD 273
                 5556********************9 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0013
                 EEETTSEEEEEE CS
        WD40  27 sGsdDgtvriWd 38 
                 +++ Dgtvr+Wd
  KKY18413.1 491 TAHADGTVRVWD 502
                 7899*******9 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 1.2
                 EEEEEETTSSE...EEEE..ETTSEEE CS
        WD40  14 tslafspdgaw...lasG..sdDgtvr 35 
                 +s a+s++ +    ++ G  + Dgtvr
  KKY18413.1 791 YSAAVSRYEDQgsaVV-GvfG-DGTVR 815
                 4444444444444244.7666.99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.53
# Mc/sec: 7006.18
//
Query:       KKY18414.1  [L=436]
Description: putative rhamnogalacturonase a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-20   71.9   5.0    6.3e-20   71.5   5.0    1.1  1  Glyco_hydro_28   Glycosyl hydrolases family 28
     0.0017   18.3   8.7      0.007   16.2   7.6    2.4  1  Pectate_lyase_3  Pectate lyase superfamily protein


Domain annotation for each model (and alignments):
>> Glyco_hydro_28  Glycosyl hydrolases family 28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   5.0   7.1e-24   6.3e-20      33     311 ..      99     367 ..      70     377 .. 0.82

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 7.1e-24
  Glyco_hydro_28  33 vtlegtttakvkekngkddivisg.ekitvlgisGkgtidGqGqawwdgkgkkkkegkkkpkflvikkvknskiknlniknspvfhfsvesgkdl 126
                     ++legt    + +++g+  i+i+  ++ +    +Gkg + G G ++ ++       g+  p++l++ +v+n+ i+++ + +sp fh+ +  ++  
      KKY18414.1  99 INLEGTIIR-TGTSSGN-MIYIEHsTDFELYSSNGKGAMQGYGYQFHEN-------GEYGPRLLRLYDVTNFAIHDIALVDSPAFHLTLDTCESG 184
                     555554433.3344444.4555431456666777888888888887764.......4579*********************************99 PP

  Glyco_hydro_28 127 tisditidasagdhNtDgidvgsskgvtisntnikngDDciainsgsknisitnvtcggGHGlSiGSvggrsdntVknvtvkdskvknsenGvRI 221
                     ++ ++++    ++   Dgid+    +  +++  ++n D c+ +++ s++i ++ v+c+   G  iGS+++    +++ v+ k+   +ns+    I
      KKY18414.1 185 VVYNTIVRG-GNEGGLDGIDLWG-FNLWVHDVEVTNKDECVTVKNPSNHILVESVYCNWSGGSAIGSLATD--TNIYKVEYKNIYTVNSTQMFMI 275
                     999987765.556789****975.6899****************************************988..88******************** PP

  Glyco_hydro_28 222 KtikgatgtvsnvkyeniklknvaypividqdYenkeptgkptsgvkisdvtfknvtgtvks.ae..avkllcekgskcsdvtmsdvkitg..gk 311
                     K++ g  g+v++++ +n   +  ay   +d  + +++++    sg+  + +t++n +g  ++ a    vk+ c  +++c+++++sd +i    g+
      KKY18414.1 276 KSN-GGDGNVTQITLSNFIGHSNAYSFDLDSAWSDESTA--SGSGIYYNSITLSNWKGDCSNgAArgPVKVICPGAVPCTNIQVSDFAIWTdtGS 367
                     *97.678***********999999*******99987654..457**************9998744226******************999663334 PP

>> Pectate_lyase_3  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   7.6   7.8e-07     0.007       3     187 ..      45     268 ..      43     293 .. 0.53

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7.8e-07
                      EGGGGT---EEEEE-HHHHHHHH......HTSS-EEE-SEEEEESS-E.........EE-SSEEE.EES-.TTTEEEEE-TT-.....SS--SE CS
  Pectate_lyase_3   3 nVkdyGakgDGvtDdtaaiqkaiscasatttgavVYfPaGtYlvsspi.........ilksgvqL.vGdg.ngrpvlkaaaaf.....vgagli 80 
                      +V+dyG + DG+tD   a+ +a     a ++g+vV +P+Gt+ +++ +         i+  g+ + +G +  ++  ++ +++f     +g+g +
       KKY18414.1  45 DVTDYGGVADGATDFGPALLDAF---NACKSGGVVNIPSGTFAMATWVtlnggsawaINLEGTIIrTGTSsGNMIYIEHSTDFelyssNGKGAM 135
                      8**********************...9******************9987777666655555555523544445555677777777777777777 PP

                      EES-TTT-................-EEEEEEEEEEE.GGGG-SS---SSEEEES-EEEEEEEEEEES-SSEEE-SSS................. CS
  Pectate_lyase_3  81 dgdpyvsg..gs............ealiatnnfyrq.irnlkiditavapgatgihwqtaqatslenvefemseasg................. 142
                      +g  y+ +  g+            +  i++  ++++ +  l++d              t++   ++n +++  ++ g                 
       KKY18414.1 136 QGYGYQFHenGEygprllrlydvtNFAIHDIALVDSpAFHLTLD--------------TCESGVVYNTIVRGGNEGGldgidlwgfnlwvhdve 215
                      77777744122233333333333322222222222222222222..............333333333333222222211111111111111112 PP

                      ..---TT---SS--EEEEES-EEES-SS-SEEES.......-EEEEEES-EEE- CS
  Pectate_lyase_3 143 ..tkhqgifiengsggflndlvfsglgdigiavg.......nqqftvrnitfnn 187
                        +k + ++++n+s+++l ++v+++    g a+g        +++  +ni++ n
       KKY18414.1 216 vtNKDECVTVKNPSNHILVESVYCN-WSGGSAIGslatdtnIYKVEYKNIYTVN 268
                      3222234566667766666666666.2223333212223223344445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2762.15
//
Query:       KKY18415.1  [L=547]
Description: putative wd domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-05   26.1   1.4        7.1    7.7   0.0    5.2  5  WD40      WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.12   12.9   0.0        3.4    8.3   0.0    3.2  3  PQQ_3     PQQ-like domain
        0.7   10.9   6.8       0.12   13.3   1.5    2.2  2  DUF1770   Fungal protein of unknown function (DUF1770)
        6.4    6.8  16.9        1.1    9.3   8.5    2.3  2  YL1       YL1 nuclear protein


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.9   1.7e+04      10      22 ..     121     131 ..     118     134 .. 0.64
   2 ?    2.7   0.0     0.061   2.7e+02       4      35 ..     265     298 ..     263     299 .. 0.84
   3 !    7.7   0.0    0.0016       7.1      23      38 .]     378     393 ..     366     393 .. 0.91
   4 !    5.6   0.1    0.0072        32      10      36 ..     408     436 ..     400     438 .. 0.78
   5 ?    4.3   0.0     0.019        84      12      28 ..     524     544 ..     513     546 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.9
                 SSSEEEEEEETTS CS
        WD40  10 Hssvtslafspdg 22 
                 H  v++++++ +g
  KKY18415.1 121 H--VSGMKWDGNG 131
                 3..6666666666 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.061
                 EEEEESS.SSEEEEEEETTSSE.EEEEETTSEEE CS
        WD40   4 lrtltGH.ssvtslafspdgaw.lasGsdDgtvr 35 
                 ++tl+ H   ++++ ++p+ +  l ++s+D ++r
  KKY18415.1 265 ITTLKPHaRTISAMHTHPSAPQtLYTASYDSSIR 298
                 56888895559999999999998889999***98 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0016
                 SEEEEEETTSEEEEEE CS
        WD40  23 awlasGsdDgtvriWd 38 
                 ++la++s D+t ++Wd
  KKY18415.1 378 HYLATASLDRTMKLWD 393
                 479************9 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.0072
                 S.SS..EEEEEEETTSSEEEEEETTSEEEE CS
        WD40  10 H.ss..vtslafspdgawlasGsdDgtvri 36 
                 H s   v++ af++ g+  a++s+D +++i
  KKY18415.1 408 HeSRlsVSHAAFNSAGQV-ATSSYDDSIKI 436
                 644466888889999999.67888*****9 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.019
                 SEEEEE....EETTSSEEEEE CS
        WD40  12 svtsla....fspdgawlasG 28 
                 ++t++     ++p+  w+a+G
  KKY18415.1 524 GITAVPavavWHPHDEWIAAG 544
                 4666666669********998 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.74   3.3e+03      17      31 ..     196     214 ..     188     222 .. 0.63
   2 ?    8.3   0.0   0.00076       3.4      22      38 ..     286     302 ..     274     304 .. 0.92
   3 ?   -0.7   0.0      0.49   2.2e+03      15      32 ..     323     343 ..     313     344 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.74
       PQQ_3  17 p....avdgglvyvgtgdG 31 
                 +    +++  lv++g+  G
  KKY18415.1 196 MsfhpTTSKPLVFAGDKLG 214
                 4344488888888887555 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00076
       PQQ_3  22 glvyvgtgdGtlyAlDa 38 
                  ++y++++d +++AlD 
  KKY18415.1 286 QTLYTASYDSSIRALDL 302
                 58**************7 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.49
       PQQ_3  15 ssp...avdgglvyvgtgdGt 32 
                 s+    a+d  ++y++t +G+
  KKY18415.1 323 SGIdmsATDPHVLYFTTLNGS 343
                 555667888889*****9997 PP

>> DUF1770  Fungal protein of unknown function (DUF1770)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.3      0.67     3e+03      16      39 ..      67      90 ..      45     116 .. 0.43
   2 ?   13.3   1.5   2.8e-05      0.12      39      96 ..     235     307 ..     215     309 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.67
     DUF1770 16 ehdlnpstaaskkepvtleekskk 39
                + d++p+   s+ + ++ +++ +k
  KKY18415.1 67 KEDITPRRTSSRLRGIQADSEVAK 90
                233333333333333333222222 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.8e-05
     DUF1770  39 k...........ddesldskeeddeedeipysvirpvsr....rqtlpPlPDLRFeqSYLkSiakAdtwwkva 96 
                 +           d++  ds+++++e+ + ++ +++p+ r     +t+p  P   +  SY +Si++ d    va
  KKY18415.1 235 EedkkpeklaniDRNPADSDSDEEEDPDPEITTLKPHARtisaMHTHPSAPQTLYTASYDSSIRALDLQKSVA 307
                 1223344455556666666666656667778899**888888899*******************999888887 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   8.5   0.00025       1.1     104     178 ..      41     110 ..       6     114 .. 0.54
   2 ?    2.3   1.2     0.033   1.5e+02      41      67 ..     232     260 ..     218     367 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00025
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1 104 qkkkkkkkidpqakeprpkkkseraswlpaeslltpkrRkssRastvenkeqleerlkereerrkkilermrkka 178
                  k ++k+     a++  pk++++++   ++++++tp rR+ssR   ++  +++ +r +e+e   +++++r + ++
  KKY18415.1  41 TKPASKV----GAPNGAPKSHKRKQAPKKEKEDITP-RRTSSRLRGIQADSEVAKRKAEDEYEAAQQVARAKRQR 110
                 1112222....1122244444433333333455555.5**********************999666666655544 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.033
                 xxxxxxx...........xxxxxxxxxxxxxxxxxxxx RF
         YL1  41 eeeeeee...........nsDsdfdsdeedeesdeeed 67 
                 eeeee++             Dsd d++e         d
  KKY18415.1 232 EEEEEDKkpeklanidrnPADSDSDEEE---------D 260
                 2222222233333222111221111111.........1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3618.37
//
Query:       KKY18416.1  [L=546]
Description: hypothetical protein UCRPC4_g04952 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.38   11.4   3.0       0.91   10.2   0.1    2.5  2  Parathyroid  Parathyroid hormone family


Domain annotation for each model (and alignments):
>> Parathyroid  Parathyroid hormone family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   5.1e-05      0.91      12      78 ..      58     125 ..      51     150 .. 0.77
   2 ?    0.7   0.4     0.046   8.2e+02      79     107 .]     294     321 ..     233     344 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 5.1e-05
  Parathyroid  12 HDkgrtlqdfkRrmwLqelldeVhtAeirelpvrslgvsestsgstlhsk.paggtKnlpvrfkleee 78 
                  HD  +  +d++ r+ L+++l + +t   +   +r + + +st+  +  +k p+ +  nlp + ++ e+
   KKY18416.1  58 HDLHKHREDVEARLRLENVLARSKTLRQQSFLKRKAQSVQSTTPGSEAPKaPPKSISNLPSTITQAEK 125
                  99999999******************9999888766666666666555552779******99988876 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.046
  Parathyroid  79 egtnLpqEtnksqaykdqalkvakkkkkk 107
                  + ++ p + + sqa   +  k +++kkkk
   KKY18416.1 294 QVPSFPTDQKSSQAE-PKDSKETGRKKKK 321
                  445555554444443.3344444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:00.56
# Mc/sec: 2917.41
//
Query:       KKY18417.1  [L=393]
Description: hypothetical protein UCRPC4_g04953 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2520.56
//
Query:       KKY18418.1  [L=343]
Description: putative thump domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-06   28.9   0.9      0.029   14.5   0.0    2.9  3  THUMP     THUMP domain


Domain annotation for each model (and alignments):
>> THUMP  THUMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1     0.068   1.2e+03      58      82 ..      78     102 ..      43     114 .. 0.79
   2 !   14.5   0.0   1.6e-06     0.029      45     113 ..     154     224 ..     135     226 .. 0.82
   3 !   11.5   0.0   1.4e-05      0.24     118     142 ..     282     306 ..     275     308 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.068
                 EEEESSHHHHHHHHHHHHHHHHHHC CS
       THUMP  58 evceadledileaakeivkkkfeee 82 
                 ++ e+++edi++++ + +k  + ++
  KKY18418.1  78 SDAEDEFEDIEASIAAEIKGLKPGK 102
                 5678899999999999888776665 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.6e-06
                 HTSTTECEEEEE...EEEEESSHHHHHHHHHHHHHHHHHHCT-.EEEEEEEESSSTSSSHHHHHHHHHHHHHH CS
       THUMP  45 ekargiqrvipv...cevceadledileaakeivkkkfeeeke.tFaVrvkrrgkhfeftsreinrevGkaiv 113
                  ++r+++r+ pv     +   +le+i +a+ +   +k  +  + ++a+r  +r+++ + ++  + ++++++i 
  KKY18418.1 154 RRSRYVKRLTPVscvKKTLSGGLEQICDAVLKEQFRKPGGR-AwKYAIRPSVRNNN-QLNRDIVIKTIADYIA 224
                 3455********87777888999999999999888887655.36************.************9985 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 1.4e-05
                 -EE-SSS-SEEEEEEEETTEEEEEE CS
       THUMP 118 lkVdlenPdivvrveiikdkayisi 142
                 ++V+l+n+d++++ve+ ++++ +s+
  KKY18418.1 282 HTVSLKNYDLLILVEVYRNTISLST 306
                 79******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.58
# Mc/sec: 1768.42
//
Query:       KKY18419.1  [L=139]
Description: putative mfs multidrug transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   11.4   3.6       0.14   11.0   3.6    1.1  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.6     8e-06      0.14      63     139 ..       9      85 ..       2      93 .. 0.43

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8e-06
       MFS_1  63 rvlllglllfalg.lllllfa..sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpl 139
                 +vl +g++l+++g +l  +f+  +++ + ++  ++ G+g  + f +  alia  +  ++r+ a++  +++ ++G+++  +
  KKY18419.1   9 PVLYAGMVLWIIGaGLKVMFSqtTPMSVYVITLIIEGAG--IDFVLQPALIAL-SRLQDRAVATSTRNLMRAFGSVISVA 85 
                 244555555555533333343222222344444444444..222222222222.23335555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.49
# Mc/sec: 858.04
//
Query:       KKY18420.1  [L=786]
Description: putative exosome complex exonuclease rrp6 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-38  131.3   0.2    5.6e-38  130.4   0.2    1.5  1  DNA_pol_A_exo1  3'-5' exonuclease
    2.2e-27   95.6   3.7    2.7e-27   95.3   1.6    2.3  2  PMC2NT          PMC2NT (NUC016) domain
      4e-10   39.5   0.8    7.8e-10   38.6   0.0    2.0  2  HRDC            HRDC domain


Domain annotation for each model (and alignments):
>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   0.2   9.4e-42   5.6e-38       3     175 ..     224     390 ..     222     391 .. 0.97

  Alignments for each domain:
  == domain 1  score: 130.4 bits;  conditional E-value: 9.4e-42
                     EEHSHHHHHHHHHHHTTSSEEEEEEEEE-SSSTTSSEEEEEEEEECSSEEEEEECTTTTTT-HGHHHHHHHT-TTSEEEESSHHHHHHHHHHHHT CS
  DNA_pol_A_exo1   3 ivtdeeeleelieelknlkvvavDtEttsldlisatlvliliqlgekeeayiidplelgddvalealkrlledenitkvghnakfDlevlardfg 97 
                      v++ee+++e++eel++++v+avD E+++ ++  + + + l+q++++ +++i+d+l    +  l+ l+++++d++i kv+h+ ++D+ +l+rd g
      KKY18420.1 224 FVDTEEGVNEMLEELQQADVIAVDLEHHDAHS--YVGLVSLMQISTRGKDWIVDTLRPWRE-RLQVLNEVFTDPKILKVFHGSTMDMIWLQRDLG 315
                     699*****************************..**********************97776.7******************************** PP

                     S--SSEEEHHHHHHHTTHSTTSSHHHHHHHHHSB---GHCCTTSSTTTSSS-HHHHHHHHHHHHHTHHHHHHHHHHHH CS
  DNA_pol_A_exo1  98 ielenlfdtmlaayvldyershsLdsLaekylgdleldkeeqiakwqkarplleeqllYAaeDadvllrlfkkLtkel 175
                      ++ +lfdt+ aa  l++++  sL++L+e++ + ++ +k +q+++w+  rpl+ e l YA+ D+++ll++f++ +++l
      KKY18420.1 316 LYVVGLFDTYHAACALNFPK-KSLKYLLERFAQ-FDAQKMYQMSDWR-IRPLPAELLDYARSDTHYLLYVFDQVRNML 390
                     *********99999999999.9***********.*************.*************************99987 PP

>> PMC2NT  PMC2NT (NUC016) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   1.6   4.5e-31   2.7e-27       3      92 .]      21     111 ..      19     111 .. 0.95
   2 ?   -2.2   0.0       1.1   6.8e+03      24      41 ..     498     515 ..     474     538 .. 0.49

  Alignments for each domain:
  == domain 1  score: 95.3 bits;  conditional E-value: 4.5e-31
      PMC2NT   3 atraanaLpaeDldfyrsldpefaksldeqserllslinsllklaaskseisas.sklededdveekfksvvdvvDsllEkadtcLDeltg 92 
                  tr+a ++++eDl+f+rs +++f+++ld+++ rll+l+n+ll+ aas s    s ++led+d+ve++++ vvdvvD+llEkad cLDe+tg
  KKY18420.1  21 STRTAGQIASEDLSFHRSSSRSFSSALDAKNVRLLQLTNRLLQVAASASTSDVSaPQLEDVDSVEDNWRGVVDVVDDLLEKADRCLDEFTG 111
                 69******************************************999887765579*********************************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.1
      PMC2NT  24 efaksldeqserllslin 41 
                  ++++++++ + l++li+
  KKY18420.1 498 PISRAVRDSLKDLVDLIK 515
                 333333333333333333 PP

>> HRDC  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3       1.3   7.9e+03       5      15 ..     274     284 ..     272     284 .. 0.82
   2 !   38.6   0.0   1.3e-13   7.8e-10       1      68 []     447     514 ..     447     514 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.3
                 HHHHHHHHHHH CS
        HRDC   5 lkaLrewReel 15 
                 ++ Lr wRe+l
  KKY18420.1 274 VDTLRPWRERL 284
                 678*****986 PP

  == domain 2  score: 38.6 bits;  conditional E-value: 1.3e-13
                 HHHHHHHHHHHHHHHHHHHTS-HHHHS-HHHHHHHHHH---SHHHHHTSTTT-HHHHHHHHHHHHHHH CS
        HRDC   1 qlallkaLrewReelAreedvppyvvfpdktLleiAeklPttleeLlqiegvgkrklekygeeileai 68 
                 q+a+++aL+ewR+ +Ar  d+  +++++ ++L ++A ++Ptt+++Ll+     +r ++   ++++++i
  KKY18420.1 447 QFAVYRALHEWRDMEARNADEGVGTILSINALFNVADAMPTTTHALLAAASPISRAVRDSLKDLVDLI 514
                 689*********************************************99999999999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1552  (0.0865637); expected 358.6 (0.02)
Passed bias filter:                      666  (0.0371465); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.51
# Mc/sec: 4668.28
//
Query:       KKY18421.1  [L=336]
Description: putative aldose 1-epimerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-65  219.6   0.1      7e-65  219.3   0.1    1.1  1  Aldose_epim  Aldose 1-epimerase


Domain annotation for each model (and alignments):
>> Aldose_epim  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.3   0.1   3.9e-69     7e-65      10     301 .]       7     332 ..       2     332 .. 0.95

  Alignments for each domain:
  == domain 1  score: 219.3 bits;  conditional E-value: 3.9e-69
                  EEEEEECTCTTEEEEEEETT.STEESB-B-STHHHHHHSC..CSSCEECSS-SEEETTEE.EETTEEEECCCCBTTTCEETBSGGG...SB-EEEEEE CS
  Aldose_epim  10 glsakislyGAtllslkvpdkeqrevllgsddaeeylkds..yfgatlgrvanRianGeF.eldGkpyqlpqneegknplHGgarg...reWeveevk 101
                  ++  ++  +GA ++++kv +    +++ g++d e+y +++  +fgat+gr+ nRi+nG+   l+Gk y+l+ n+ g+++lHGga+g   ++++ ++  
   KKY18421.1   7 ESAFTFLAQGAIIQEFKVAG---HNIVQGFSDPESYRTHNspFFGATIGRTTNRIKNGRLdNLNGKSYTLATNN-GNHSLHGGAKGwdkQTFTGPKPI 100
                  5678999*************...69**********************************956************.*********************99 PP

                  E...TTEEEEEEEEEEETCHCSTSEEEEEEEEEEETTEE.......EEEEEEEEESS...S-EEEEEEEEEEEETSSC.TCTGGEEEEEEEEEEEECT CS
  Aldose_epim 102 e...ddgvtvslvlkpdgeegypgdlevrvtytLnedne.......lkieyeatndg...kptpfnltnHtYFnlsge.sidshelqieadeylevde 185
                  +   ++gv +++ + +dg+egypg++e+rv yt  ++++       l+ eye++  g   ++t++++tnH+YFnlsg+ +i++ e q+++++yl++d+
   KKY18421.1 101 NrdgKEGVLFTYLS-KDGDEGYPGTVEARVWYTAWKEDDaglsktiLTAEYEIEFVGdecDETVVGITNHSYFNLSGAsTIEGMEAQLATSHYLPIDD 197
                  999***********.******************75555445566679999999988888*************************************** PP

                  TSGEEEEEEECTTCCCCCCSSEEHCSSETEEEEEEEESSC............SEEEEEETTTTEEEEEEEETTSSEEEEEECTTTT........SEEC CS
  Aldose_epim 186 eliptgelkdvkgtpfdfrqpkaigedlkglDhayllksk............lkaviidpdkksgiklevsttepalvvytgnflk........kyls 263
                  ++ip g +  +++t+   ++p ++g + + lD++++l++             lk+ ++ +++ +gi+lev++tepa+++ytg f +            
   KKY18421.1 198 AGIPHGTIETYTSTDV--EKPFVLGAREPDLDDCFVLDTDpssipldtrsrpLKKLATFQHPITGIHLEVHSTEPAFQFYTGRFINvpavgkdpAREP 293
                  ******9999998888..*********99*****************************************************************999* PP

                  CEEESSECTCETCCCECHHHT.-EEEHTTTEEEEEEEEE CS
  Aldose_epim 264 reglaletqmlpdepnhpefp.sivlkpGesysaetsys 301
                  r+g+++e+++++++p+ pe++  ++l++Ge++  +t+y+
   KKY18421.1 294 RSGFCVEPSRYVNAPGVPEWRnMCLLRKGEKFGQKTVYK 332
                  ************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 2081.22
//
Query:       KKY18422.1  [L=689]
Description: putative neutral trehalase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.2e-179  597.5   0.1   2.6e-179  597.3   0.1    1.0  1  Trehalase        Trehalase
    5.6e-16   57.9   1.7    9.8e-16   57.2   1.7    1.4  1  Trehalase_Ca-bi  Neutral trehalase Ca2+ binding domain


Domain annotation for each model (and alignments):
>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  597.3   0.1  2.9e-183  2.6e-179       2     510 ..      79     641 ..      78     643 .. 0.96

  Alignments for each domain:
  == domain 1  score: 597.3 bits;  conditional E-value: 2.9e-183
                 CTTSTCCCCCGCCTS-..HHHHHHHHHCHHCCHHEE..TTTTHHHHHHHHCE-SGGGS.EE.E-TT-HHHHHHHHHHH.CTGGHH.EECCHHCC.TTC. CS
   Trehalase   2 lfgdkktfvDearlse..vdrllrlikaslekaltrridkedlkkfvedtfeetgseleri.vpkdekeqpeyflkka.edeelrleaeelnkl.wka. 94 
                 ++g+k++++D +rl e   ++l+rli++s++++ltrrid+++++k+ +d +++t+++++ri vp  ++eq+ey++++a +++e+rl++++l+++ +++ 
  KKY18422.1  79 DYGQKTIVLDHKRLFEnpMHKLSRLIRDSFWNNLTRRIDASNIEKAGKDPKDWTDDPRPRIyVPRAAPEQHEYYTQVAkSRPEIRLDVQWLPDEpITPe 177
                 7999**********999899********************************************************999************98645556 PP

                 CCCHTTTS-SCE-TTECEEE-TT.........-EE-SBTTB-S-BCCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHSS--SBSBGGGTT---S--H CS
   Trehalase  95 lvrkikkkvgllpeassllplpk.........pfvVPGgRFrElYyWDsYfvilGLleskkvdlakgmvenfiyliekYGkilNgnRsYYlsRSQPPll 184
                 +vr++++k+gll+ +++ ++++          pfvVPGgRF+ElY+WDsY+++ GLl +++vdl ++mv nf+++i++YGk+lN+nRsYYl RSQPP+l
  KKY18422.1 178 YVRDLNEKPGLLALEMETIIDETtgekkmkglPFVVPGGRFNELYGWDSYMESIGLLINGRVDLCEAMVRNFCFCIKHYGKVLNANRSYYLMRSQPPFL 276
                 **********************99*************************************************************************** PP

                 HHHHHHHHHHC......HCCHHHHHHHHHHHHHHHCCTTTCCETTCCC-CTC-EEE--SSSTTS-TCCCHHHHHHHHHCTT...HCCHHHHHCCCCHHH CS
   Trehalase 185 tdmvlrvyekt......eddallravlaalkkeyefwmaeqrldevtklskryllnrygvpeetprpesyledketaeklk...kerkkeevyrelkaa 274
                 td  l+v+e+       + ++l+  +laa+k++y++wm+e+r d+ ++ls ry++ + gvp+et+++++ ++ +++aek++   ++  + ++ + +k++
  KKY18422.1 277 TDFTLNVFERKnkddpaSLEFLRLGILAAIKEYYSVWMSEPRYDPASGLS-RYRPGGSGVPPETEASHFVHIITPYAEKMGltfEQYVQGYNDGSIKEP 374
                 *********999999988999999**************************.******************************998899999********* PP

                 HHCCHHCHHHHCCCCTT-S.TCCCCTGGGEE-HHHHHHHHHHHHHHH.....HCCCHCC-..................CCHHHHHHHHHHHHHHHHHHH CS
   Trehalase 275 aesgwdlssRwlresghdtgellelrtaklvpvDLNallyklekdia.....efedklgd..................setseefeekaekrkkaidkv 350
                 ++++++l++R++resghdt+++le ++a+l++vDLN+ lyk+e+dia     +      +                   e s+ ++++a++rk+a+d++
  KKY18422.1 375 ELDEYFLHDRAVRESGHDTSYRLEGVAANLATVDLNSCLYKYETDIAncirkY-----FKerisvppefqtaenrvdaVEISAVWDRRAKRRKQAMDRY 468
                 ***********************************************644442.....333556688888888888889******************** PP

                 CEETTTTEE--EETTTTEE----BGGGGHHHHCT-S-HHHHHHHHHHCHHHHCCCCCEES..CCCC-SBSSS.-SSTTSTTEEEHHHHHHHHHHHHHTT CS
   Trehalase 351 LWneeagvylDYdlkkkkqtnyesatnlvpLwaglaskeqaaklvakvlekleesgllva..egglgtsllk.sgrQWDyPngWaPlqilavegleryg 446
                 LWn ++++y+DYd+ ++k+t+ye at+++p+wag+as+ qaa+lv ++l+k+e++g++ +  e+++g+++l+ ++rQWDyP+gWaP+qila+ gl +yg
  KKY18422.1 469 LWNPNKNMYFDYDTVRRKRTTYECATTFWPMWAGAASPTQAASLVLHALPKFEAYGGILSgtEKSRGQISLSrPNRQWDYPFGWAPQQILAWGGLIKYG 567
                 **********************************************************9999********999************************** PP

                 -HHHHHHHHHHHHHHHHHHHHHC.TSEBSCEETTS.......TSTTB..TT-SSSSTTCSBHHHHHHHHHHHCC CS
   Trehalase 447 eeelaerlaerwlktvtkafsde.gklvEKYdvtr.......eaeyg..GgggeyvlqeGFGWvNgvvlelLel 510
                 ++ +ae la++w+++v kaf+d+ g++vEKY+vtr       eaeyg  G ++ +v++eGFGWvN++++++L+ 
  KKY18422.1 568 YDDVAEALAYKWVFMVLKAFVDFnGVVVEKYNVTReldphkvEAEYGnqGSDFVGVPREGFGWVNSSYVYGLSI 641
                 ******************************************999*9************************986 PP

>> Trehalase_Ca-bi  Neutral trehalase Ca2+ binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   1.7   1.1e-19   9.8e-16       2      30 .]      22      50 ..      22      50 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 1.1e-19
  Trehalase_Ca-bi  2 eqLLeqEDTDgnfQITIeDkGPKvlsLGT 30
                     ++LLe+EDTDgnfQITI+D GPK++sLGT
       KKY18422.1 22 KRLLEREDTDGNFQITIDDDGPKTISLGT 50
                     68**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 4420.41
//
Query:       KKY18423.1  [L=347]
Description: putative otu domain-containing protein 6b [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-18   66.6   0.0    1.8e-17   64.0   0.0    2.1  1  OTU            OTU-like cysteine protease
    0.00051   19.6   0.0        0.3   10.5   0.0    2.5  2  Peptidase_C65  Peptidase C65 Otubain
  ------ inclusion threshold ------
       0.51    9.1   8.0       0.67    8.7   8.0    1.1  1  ALMT           Aluminium activated malate transporter


Domain annotation for each model (and alignments):
>> OTU  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   3.1e-21   1.8e-17       1     127 []     178     322 ..     178     322 .. 0.87

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 3.1e-21
                 --SS-HHHHHHHHCCCSS.S.HCCHHHHHHHHHCHHHHHHTSSHHCCHHHHCCHHH...HHHHTTSTTHHHHHHHHHHHHHHCTS-EEE.......... CS
         OTU   1 rgDGnCLlravsqqlwgvsd.elrkakvseLreklaeylrehseelelfleeeeeg...ylkeiektaawggeleifalahiLrrpIiV.......... 85 
                 r+DG+C++ av+ ++ +    + ++ +++++r+++a+y+ +h e + +fl++  e    y+++i++ta+wggele+ a+a+   r+I+V          
  KKY18423.1 178 RSDGHCMYSAVAWAISLSPSpSSQNPTYQTIRSNTASYISSHPEAYLPFLSDPSESlesYTNKIANTAEWGGELELSAIANWSGRKIHVvqaegidrvf 276
                 69*************988888888889*************************9887999******************************8888877777 PP

                 .....ETTSSSSEEEE-TT-EEE--TTS-GGGS-SS-EEEEEETTEE CS
         OTU  86 .....lksesgeelvglkfegvylplekdkslclkypihlyylgeHy 127
                         + ++  ++ + ++ + + + +  ++l+y++  ++lgeHy
  KKY18423.1 277 epefaTPGKIPQGHIP-RNHNDNPEGNENTDIWLAYYRKSFGLGEHY 322
                 6664333344444555.66666888899999***************9 PP

>> Peptidase_C65  Peptidase C65 Otubain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0   0.00083         5      44      60 ..     176     192 ..     173     195 .. 0.88
   2 !   10.5   0.0   4.9e-05       0.3     142     236 ..     208     311 ..     194     327 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00083
                    -B--SSTHHHHHHHHHH CS
  Peptidase_C65  44 rvrgDGnCfyRaflfsy 60 
                    ++r DG+C y+a+++++
     KKY18423.1 176 QIRSDGHCMYSAVAWAI 192
                    589**********9875 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 4.9e-05
                    HHHHHHHHHHHTHHHHGGGS-TT.--HHHHHHHHTSSTT--B-HHHHHHHHHHTT--EEEEESS...SSGBSTTSEEEEES-S..........SS- CS
  Peptidase_C65 142 lRlltsaelkthadeyepFldel.stveeFceqevepvnkEaDnvqitaLaealgvkvrVeyld...rsvegesvnahafpeeaq......kseee 227
                    +R  t +++ +h + y pFl++  +++e++ ++++  +++   ++++ a+a+  g k++V+  +   r  e+e  +  ++p+ +       + e +
     KKY18423.1 208 IRSNTASYISSHPEAYLPFLSDPsESLESY-TNKIANTAEWGGELELSAIANWSGRKIHVVQAEgidRVFEPEFATPGKIPQGHIprnhndNPEGN 302
                    677799****************96667776.567899999999***********999988764422255455544444444444344332344444 PP

                    S--SEEEEE CS
  Peptidase_C65 228 qapeitLlY 236
                    +++ i L Y
     KKY18423.1 303 ENTDIWLAY 311
                    666676665 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   8.0   0.00011      0.67     306     447 ..       8     148 ..       1     165 [. 0.67

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00011
        ALMT 306 sakvlrelaesvkkmkklskveellkevkvaaeeLqskldskskLlvnsekweaakkkekaeeveekkeeekeseskkeeaeaveeaeseseksllkes 404
                   k lr+l+ ++ ++kk+   +++ + v+  +e+L+ +l +k  L ++  +   + + e+ +++ee    + + + + ee++ ++e+ +++++  ++++
  KKY18423.1   8 HRKELRDLQSRITQKKKSAT-KKTRRGVNDECERLERELREKHRLEIGGLEGGDTVNGENGDREEEVDLDKLRID-DDEEEKVSKESVVTKDEAESTAT 104
                 56899******999888887.89************************9998666666665555555444443333.33333444444455555556666 PP

        ALMT 405 krslklskkesapaeesleekqlskeeelkelelae.alslatf 447
                  + +++++++++p+ +s++++ +++    ++ e+ae +l+    
  KKY18423.1 105 AKPTTTEPQNETPTGKSKKPNRQKARLARRAAEVAEqSLQASLE 148
                 67778888999999997777666555555555544314554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1464  (0.0816554); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2230.32
//
Query:       KKY18424.1  [L=615]
Description: putative gamma-glutamyltranspeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.7e-144  480.4   0.0   7.8e-144  480.2   0.0    1.0  1  G_glu_transpept  Gamma-glutamyltranspeptidase


Domain annotation for each model (and alignments):
>> G_glu_transpept  Gamma-glutamyltranspeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  480.2   0.0  4.3e-148  7.8e-144       2     512 .]      46     610 ..      45     610 .. 0.93

  Alignments for each domain:
  == domain 1  score: 480.2 bits;  conditional E-value: 4.3e-148
                      HHHHTT--HHHHHHHHHHHHHHHSTTT-STTSEEEEEEEETTSCEEEEEEE--BB-TT--TTTT......TSCBCCHHHHSSGG...G-BB--H CS
  G_glu_transpept   2 evLrkGGnAvDAavAaalclgvvepqssGiGGGgfllvydaktkkvealdaretAPaaatkdmf......dkegdsklsktgal...avgVPGe 86 
                      ++L++GGnA+DAavA+a++l+++ep ++GiGG++f+l+y+a++kkv+al+++++A++++t d        ++ ++ ++++tg+    +v+VPG+
       KKY18424.1  46 RILKQGGNAADAAVAVAAALNMTEPSMTGIGGDMFCLFYKATDKKVYALNGSGRAGGKVTLDRIrndlgiKDGQAGEIPMTGPGsvhSVTVPGA 139
                      8********************************************************************98888888888886433399***** PP

                      HHHHHHHHHHH-..SS-HHHHHHHHHHHHHH-EE--HHHHHHHHHCHHH.HHTSHHHHHHH.....EETTSE.--TTSEE--HHHHHHHHHHHH CS
  G_glu_transpept  87 vagleeahkkyG..klpwadllepaiklareGfpvsealaralaeaeer.lkkdpelaklF.....lpegev.lkagellkqpalAktLerlae 171
                       ag++++++++G  kl+++++lepai+l +eG+pvse  a  ++++e++ + ++p++a++      +p g   +kage++++p lA+t+++la+
       KKY18424.1 140 AAGWVDTVERFGsgKLSLSQILEPAIQLGEEGYPVSELSAHLWQRSEQKiRDASPNFAEMLksassAPGGVRaPKAGEIFRNPTLAQTFRTLAT 233
                      ************99***********************************88899****999777767777667********************* PP

                      HTTHHHHSSHHHHHHHHHHHHTT-S--HHHHHH--...-EEES-EEEEETT..................CEEEEE-TTCSHHHHHHHHHHHHCT CS
  G_glu_transpept 172 eGaeaFYkGelAeklvaelqkagGiltaeDLanyk...vevreplsadyrg..................gytvyepppssggivllqiLnileg 244
                      eG+ aFY+G+++++lv+ +q+ gG+l+++DL+++    +   +p++++++g                  g +++e+pp+++giv+l++L il++
       KKY18424.1 234 EGKHAFYTGRIGQELVKVVQDLGGYLELADLEQHAnlgSGSPDPICLHFKGqkvgdlpsthvngeagyeGVKLWEHPPNGQGIVALMALGILQE 327
                      **********************************966668999******889****************************************** PP

                      TTGGGCTTTC........HHHHHHHHHHHHHHHHHHHHH-SSTTTSSSGHCHHHHHT-HHHHHHHHTT.BTTB..SGGGCSCGGCSCG.TTEEE CS
  G_glu_transpept 245 fdlkslssns........aetlhllvEamklayadRsrylgDpdfvknptelveellskeyakeraklIkdkaatpsseyykaaeaaeesggTt 330
                      +++    + +        a +lh ++Ea+++a++d++++++Dpd  ++p    ++l+s++y++er+kl+++++a+ps++++++++a ++s++T+
       KKY18424.1 328 LEKAGKIPYFssisdhnsASYLHAIIEALRIAFSDAAWFVTDPDVEDVP---SQSLISPSYLAERSKLFSPDHAMPSPQHGEPSPA-HRSSDTV 417
                      **4444433355667778****************************988...************************8877777665.589**** PP

                      EEEEEETTS-EEEEEEEESSTTTTSEBETTTTEBE--GGGGSBSTS..TTSCSTTSTTB--TT----B----EEEEE..TTEEEEEEEEESGGG CS
  G_glu_transpept 331 hlsvvDregnaVSltstinllFGsgvvvpgtGilLnnemddfstgvenafgldpspanaiePgkRplssmaPtivlk..dgkpvlvlGaaGGsr 422
                      ++sv D+egn  S++ +++ +FG++++ +g+G++L+n++ +fs        l++ ++n ++P kRp+++++P ++++  d++   v+G++GG +
       KKY18424.1 418 YFSVTDSEGNGCSFIISNYGGFGTCIIPRGCGFTLQNRGANFS--------LKSGHPNVLAPSKRPYHTIIPAMITNahDNSLHTVYGVMGGFM 503
                      *******************************************........**************************86667777********* PP

                      HHHHHHHHHHHHHTT-S-HHHHHHS--EEE.SSSST........EEEESTTS.HHHHHHHHHTTSEEEESSSTCCCEEEEEEEE........TT CS
  G_glu_transpept 423 iisavlqvlvnvldlgldlqeavdaprihh.qllpd........kvevEegfseevveeLearGhkvkevedsssvvaavavak........ek 499
                      ++++++qvl+n+l++++ +q+a+dapri+    +pd         v++Eeg+s+++v++Lea+Ghkv++     +++ ++ ++         +k
       KKY18424.1 504 QPQGHVQVLLNMLVFHMTPQAALDAPRICIgAGTPDegetgvdsIVYLEEGISQDTVKGLEALGHKVEVLTGLERGMFGRGQVIrchvdeetGK 597
                      ******************************944677788888889*************************999998888888777899**9999 PP

                      TEEEEEE-TTTTT CS
  G_glu_transpept 500 gvleaasDprkdg 512
                      +v++a+sD+r+dg
       KKY18424.1 598 TVYSAGSDMRGDG 610
                      99********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.49
# Mc/sec: 3751.10
//
Query:       KKY18425.1  [L=319]
Description: putative dna primase large subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-11   43.1   0.0    6.8e-11   42.2   0.0    1.4  1  DUF4470   Domain of unknown function (DUF4470)
    4.2e-07   29.6   0.1      8e-07   28.6   0.1    1.5  1  TPR_11    TPR repeat
    1.3e-06   28.1   0.1      0.017   15.2   0.0    2.7  2  TPR_2     Tetratricopeptide repeat
    6.6e-06   25.7   0.6      0.096   12.6   0.0    2.5  2  TPR_1     Tetratricopeptide repeat
      0.003   17.8   0.1      0.009   16.3   0.1    1.9  1  TPR_17    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.019   15.2   0.2       0.58   10.5   0.1    2.5  2  TPR_8     Tetratricopeptide repeat
      0.038   14.5   0.1      0.085   13.4   0.1    1.6  1  TPR_19    Tetratricopeptide repeat
       0.11   12.8   0.2       0.64   10.3   0.0    2.2  2  TPR_12    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> DUF4470  Domain of unknown function (DUF4470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0     3e-14   6.8e-11       2      95 ..     150     252 ..     149     255 .. 0.79

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 3e-14
     DUF4470   2 wGntpaldllqllk..edeendlniLllgsgDlRhvlktiasl....kpssksrklditlndneaeivaRnlllLslllepd...dslgleeaaellle 91 
                 +G+ ++ +l++++     e+ d+++L+ g gD+R++++t+ +      +  ++r  +it+nd +++ +aR+l+++ ll e     +++++   +   l+
  KKY18425.1 150 FGHDEPESLVDKTLfsVVENADISLLFGGIGDARNLFATLTEIawteAETPSNRSYHITINDIKPAAIARDLVVFFLLNELLplgKDPKKALVVMNTLH 248
                 788888888888766555677**********************99985467999******************999888765544455555555666666 PP

     DUF4470  92 iwys 95 
                 + ys
  KKY18425.1 249 FVYS 252
                 6666 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.1   3.6e-10     8e-07       1      42 []      10      51 ..      10      51 .. 0.97

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.6e-10
      TPR_11  1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42
                G+++y++ ++++Ai  Y +A +l P+n+  ++nL +ay++ G
  KKY18425.1 10 GNEFYKKLQLPKAISLYIQASELEPTNPLPLSNLSAAYFEAG 51
                9*************************************9876 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1    0.0003      0.67       1      34 []       3      36 ..       3      36 .. 0.94
   2 !   15.2   0.0   7.4e-06     0.017       4      30 ..      40      66 ..      37      67 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0003
       TPR_2  1 aealynlGlayyklgdyeeAleafekAleldPnn 34
                ae l  +G+  yk+ ++ +A+ ++ +A el+P+n
  KKY18425.1  3 AEDLRKQGNEFYKKLQLPKAISLYIQASELEPTN 36
                5778899*************************98 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 7.4e-06
       TPR_2  4 lynlGlayyklgdyeeAleafekAlel 30
                l nl  ay+++gdy+++++a  k+l l
  KKY18425.1 40 LSNLSAAYFEAGDYDKCIDAAVKCLTL 66
                789*****************9999976 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00012      0.27       7      34 .]       9      36 ..       3      36 .. 0.94
   2 !   12.6   0.0   4.3e-05     0.096       9      30 ..      45      66 ..      39      68 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
                HHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  7 lGnayfklgkydeAleyyekALelnPnn 34
                 Gn ++k+ ++ +A+  y +A el+P+n
  KKY18425.1  9 QGNEFYKKLQLPKAISLYIQASELEPTN 36
                69************************98 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.3e-05
                HHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1  9 nayfklgkydeAleyyekALel 30
                +ayf+ g+yd+++++  k+L+l
  KKY18425.1 45 AAYFEAGDYDKCIDAAVKCLTL 66
                79**************999987 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1     4e-06     0.009       1      33 [.      25      57 ..      25      58 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4e-06
      TPR_17  1 lylkaleldPnnadaynnLAelllknGdlmtAr 33
                ly +a el+P+n+ ++ nL  ++ ++Gd+++++
  KKY18425.1 25 LYIQASELEPTNPLPLSNLSAAYFEAGDYDKCI 57
                69999*************************997 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.15   3.4e+02      19      34 .]      21      36 ..      18      36 .. 0.91
   2 ?   10.5   0.1   0.00026      0.58       6      30 ..      42      66 ..      40      69 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.15
                HHHHHHHHHHHHHHH. CS
       TPR_8 19 eAkeyyekaleldpdn 34
                +A++ y +a el+p+n
  KKY18425.1 21 KAISLYIQASELEPTN 36
                79***********986 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00026
                HHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8  6 nlgsiylklgdyeeAkeyyekalel 30
                nl+ +y++ gdy++ + +  k+l+l
  KKY18425.1 42 NLSAAYFEAGDYDKCIDAAVKCLTL 66
                78899******************97 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   3.8e-05     0.085       6      45 ..      18      57 ..       6      74 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.8e-05
      TPR_19  6 dyaeAlalleqalqedpknaearllLAeallalgqldeAe 45
                ++  A++l+ qa + +p n+  + +L  a++++g++d+ +
  KKY18425.1 18 QLPKAISLYIQASELEPTNPLPLSNLSAAYFEAGDYDKCI 57
                6789*********************************965 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.85   1.9e+03      18      31 ..      18      31 ..       6      33 .. 0.72
   2 ?   10.3   0.0   0.00029      0.64       6      34 ..      40      68 ..      37      93 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.85
      TPR_12 18 rydeAlellekale 31
                ++ +A++l+ +a e
  KKY18425.1 18 QLPKAISLYIQASE 31
                45677777777766 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00029
      TPR_12  6 lnnlaavlrrlgrydeAlellekaleiar 34
                l+nl a+++++g+yd++++   k+l +++
  KKY18425.1 40 LSNLSAAYFEAGDYDKCIDAAVKCLTLIS 68
                679********************999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2300.05
//
Query:       KKY18426.1  [L=239]
Description: putative nucleoside-diphosphate-sugar epimerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-08   32.8   0.0    7.3e-08   32.5   0.0    1.1  1  NAD_binding_10   NAD(P)H-binding
    2.1e-05   24.1   0.0    2.6e-05   23.8   0.0    1.2  1  Epimerase        NAD dependent epimerase/dehydratase family
    0.00097   19.3   0.0     0.0014   18.8   0.0    1.4  1  DapB_N           Dihydrodipicolinate reductase, N-terminus
     0.0016   17.6   0.0     0.0059   15.8   0.0    1.8  2  NAD_binding_4    Male sterility protein
      0.009   16.4   0.0      0.014   15.8   0.0    1.3  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
  ------ inclusion threshold ------
       0.02   13.9   0.0       0.03   13.4   0.0    1.3  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
      0.021   14.3   0.0       0.05   13.1   0.0    1.6  1  adh_short        short chain dehydrogenase
      0.036   13.2   0.0      0.049   12.7   0.0    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.038   13.1   0.0       0.07   12.2   0.0    1.4  2  RmlD_sub_bind    RmlD substrate binding domain
      0.084   13.1   0.0       0.15   12.3   0.0    1.4  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
       0.14   11.6   0.0       0.19   11.2   0.0    1.2  1  BtpA             BtpA family


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   4.5e-11   7.3e-08       1     181 [.       7     213 ..       7     216 .. 0.67

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 4.5e-11
                     TTTSHHHHHHHHHHHHC-.T-EEEEEETTHHHCH...HHHCTTTCEEEE--TT-....CCHHHHHHTT-SEEEES---TCCHHHH.......... CS
  NAD_binding_10   1 GAtGkvGrllvkellarg.ghevtalvRnpekla...eleaeeglevvegdvtd....vedlaealkgadaVvsalggggkdeeg.......... 77 
                     GA+G vG ++v++ l++    +v al+R+p k++   ++e +++ ++ ++ +++    +e+++++++ ad  +++++ + +++++          
      KKY18426.1   7 GASGFVGTEIVRQCLNNPnINSVIALARKPIKAPsdlDVE-ADASKLQSLTLENygsySEEVRRHFSSADGCIWTVAITPTKSTThdfeevrrvc 100
                     9*****************76679******99997544455.3444445555555334479***********999998777744445566668888 PP

                     ......HHHHHHHHH...HCT--EEEEEEETTTTSGCGCHHHHHHHH..CCHHHHHHHHHHHHHHHHSSSEEEEEEE-CEE-ST--SEEEEETTS CS
  NAD_binding_10  78 ......aknivdaak...eagvkRfvlvsaigvgdevpgefgewnke..llkaylaakraaeellrasgldwTivrpggLtdepttkyrvvekge 161
                           a  +++aa    ++   Rf+++s++ ++++ ++++++w+ e  l++   +  + a +   +  ++   v+pg +t    +  +v+  ++
      KKY18426.1 101 qdyplaALEAIRAATppgKTRPFRFIYMSGMAAERD-QTTTPKWKPEycLMRGETENRALALAKETNGRIEVCAVKPGLITSSGFSLRNVG-VNT 193
                     888888666677776333667789*********975.566778887744555555555555555555688899999988887653222222.222 PP

                     S----EEEHHHHHHHHHHHC CS
  NAD_binding_10 162 pfkggsisradVAdvlvavl 181
                         +si+   V   +va+l
      KKY18426.1 194 IGYLRSIPTIPVSSIVVAML 213
                     22224566666666666555 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.6e-08   2.6e-05       1     115 [.       3     130 ..       3     168 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.6e-08
                 EEEETTTSHHHHHHHHHHHHCT.SE.EEEEES-STTTTCHHCHHC...EEEE--TT-HH....HHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg.ye.vigldrlssasntarledl...elveldltdrs....alerlfkeeqpdavihlAavggvaassedpadfiek 90 
                 i+VtGa+Gf+G+ +v+++l++  ++ vi+l+r++ + ++ ++ ++   +l  l l +      +++r f+   +d  i   a+   + +  d +++ + 
  KKY18426.1   3 IIVTGASGFVGTEIVRQCLNNPnINsVIALARKPIKAPSDLDVEAdasKLQSLTLENYGsyseEVRRHFS--SADGCIWTVAITPTKSTTHDFEEVRRV 99 
                 89******************999556*******9999999888889998888888887633335555555..788888888877777777777888888 PP

                 HTHHHHHHHHHHH......HHTCTEEEEEEE CS
   Epimerase  91 nlqgtlnlleaar......kagvkrllflsS 115
                    + l  lea+r      k+ + r++++s 
  KKY18426.1 100 CQDYPLAALEAIRaatppgKTRPFRFIYMSG 130
                 8888888888888444444334448888876 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   8.4e-07    0.0014       1      37 [.       1      37 [.       1      96 [. 0.83

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 8.4e-07
                EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCS CS
      DapB_N  1 ikvavvGasGrmGkevvkaveeaedlelvaavdrkes 37
                +k++v+GasG +G+e+v+   ++++++ v a+ rk+ 
  KKY18426.1  1 MKIIVTGASGFVGTEIVRQCLNNPNINSVIALARKPI 37
                89********************************992 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.6e-06    0.0059       1      33 [.       5      37 ..       5      75 .. 0.83
   2 ?   -0.3   0.0      0.29   4.8e+02     189     208 ..     162     181 ..      84     213 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.6e-06
                   EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-SSS CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpev.kiyllvRaks 33
                   +TGa+GF+G+ ++++ L++  ++  +++l+R+  
     KKY18426.1  5 VTGASGFVGTEIVRQCLNNP-NInSVIALARKPI 37
                   7****************996.588******9764 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.29
                    HHHHHH---EEEEEE-EEE- CS
  NAD_binding_4 189 earrrsglpvvivRpsiitg 208
                    ++  ++++ v+ v+p+ it+
     KKY18426.1 162 AKETNGRIEVCAVKPGLITS 181
                    22223566677777777776 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   8.6e-06     0.014       1      57 [.       2      58 ..       2      78 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.6e-06
                    EEEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTT.TTTSBHHHHSGGGTTTECEBEE CS
  Semialdhyde_dh  1 kvaivGatGyvGqellrlLeehpevelvvllsssr.saGkklaeavkaleegkdlkve 57
                    k+ + Ga+G vG+e++r   ++p+++ v +l+++  +a + l+  +   ++ + l++e
      KKY18426.1  2 KIIVTGASGFVGTEIVRQCLNNPNINSVIALARKPiKAPSDLDVEAD-ASKLQSLTLE 58
                    57899***************************998666555554443.4455555555 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.8e-05      0.03       1      30 [.       4      33 ..       4     112 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.8e-05
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrleelkevrvlD 30
                +vtG++GF+G ++v++ ++  +++ v +l 
  KKY18426.1  4 IVTGASGFVGTEIVRQCLNNPNINSVIALA 33
                69***************9998877776655 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.1e-05      0.05       3     183 ..       3     180 ..       1     188 [. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.1e-05
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseeew 101
                 ++vtGas+ +G +i+++++++     v++   +++ ++ + l     +a a ++   + e+   + e+++ ++ + d  +  ++it +++   ++ ee+
  KKY18426.1   3 IIVTGASGFVGTEIVRQCLNNPNINSVIALARKPI-KAPSDLDV---EADASKLQSLTLENYGSYSEEVRRHFSSADGCIWTVAIT-PTKSTTHDFEEV 96 
                 89*******************99888888877766.66677665...5888888888889999999*******************5.666678899999 PP

                 HHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTB....HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS CS
   adh_short 102 ervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagv....aaYsAsKaavagltrslakelaptgirvnavaPGlvd 183
                 +rv +    ++++++ra++p   k +  r + +s +a++     +    + Y+   +  +  + +lake + + i+v av PGl+ 
  KKY18426.1  97 RRVCQDYPLAALEAIRAATPP-GKTRPFRFIYMSGMAAERDQTTTpkwkPEYCLMRGETENRALALAKETNGR-IEVCAVKPGLIT 180
                 999999999999999999999.778888999999999976554441111567777777777777777777665.999999999886 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     3e-05     0.049       1      32 [.       3      35 ..       3      60 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3e-05
                     EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES- CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilkk.kpkkiillerd 32
                     ++vtGa+G +G e+vrq+l++ +++++i l r+
       KKY18426.1  3 IIVTGASGFVGTEIVRQCLNNpNINSVIALARK 35
                     79******************9999999988776 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.3e-05      0.07       1      37 [.       1      45 [.       1      63 [. 0.71
   2 ?   -3.1   0.0       2.1   3.4e+03     227     275 ..      96     144 ..      84     147 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.3e-05
                   EEEEEESTTSHHHHHHHHHCTT..TSEEEEEE-TT......T--T CS
  RmlD_sub_bind  1 mkilvtGanGqlGseLakqlae..eglevlaltre......eldl 37
                   mki+vtGa+G +G+e+++q  +  +  +v+al r+      +ld+
     KKY18426.1  1 MKIIVTGASGFVGTEIVRQCLNnpNINSVIALARKpikapsDLDV 45
                   89**************99976532334688888886666553333 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.1
                    HHHHHCHTT.SEEEEE-CCCS--SS---.SBE-B--HHHHHCCT----BHH CS
  RmlD_sub_bind 227 ilkeagads.eevkpistaeyptpAkRP.anSvLdtekleatfgiklrewr 275
                    + + ++ ++ + +++i +a  p + +RP +   ++  ++e+  ++++++w+
     KKY18426.1  96 VRRVCQDYPlAALEAIRAATPPGK-TRPfRFIYMSGMAAERD-QTTTPKWK 144
                    455555555566677755554444.44413444555555554.66666776 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.5e-05      0.15       1      65 [.       3      65 ..       3      78 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.5e-05
                     EEEE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHH CS
  Sacchrp_dh_NADP  1 vliiGa.GsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaa 65
                     +++ Ga G+vG  +++ ++++ ++   ++   r+  k+   ++       + ++l+ eny +  ++
       KKY18426.1  3 IIVTGAsGFVGTEIVRQCLNNPNIN-SVIALARKPIKAPSDLDV-EADASKLQSLTLENYGS-YSE 65
                     7899********************5.888888999998888764.67778888888888887.444 PP

>> BtpA  BtpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00011      0.19     153     230 ..       9      83 ..       1     101 [. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
        BtpA 153 vplverdlesavkdtvergladavilsGkatGgevdleelklaketvkvkvlvgsGvseenlekllsiadGvivgtsi 230
                   +v    +++v++++++  +++vi   ++  ++++  ++++ +  ++  +l + G   e +++ +s adG+i +  i
  KKY18426.1   9 SGFVG---TEIVRQCLNNPNINSVIALARKPIKAPSDLDVEADASKLQSLTLENYGSYSEEVRRHFSSADGCIWTVAI 83 
                 55555...6789999999999999999999999999999999999999*************************87666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1754.55
//
Query:       KKY18427.1  [L=382]
Description: hypothetical protein UCRPC4_g04896 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        7.8    6.2  15.0       0.42   10.3   6.9    2.2  2  Cation_ATPase_C  Cation transporting ATPase, C-terminus


Domain annotation for each model (and alignments):
>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   6.9   2.4e-05      0.42      56     175 ..      17     137 ..      11     145 .. 0.74
   2 ?    0.4   1.1     0.025   4.5e+02     125     174 ..     165     214 ..     157     220 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 2.4e-05
  Cation_ATPase_C  56 iqgllqalvtllvffltll......lfgisekenklssnyaqtmaFitlvlsqifnalnlrs.rreslfkfsglfsn.kllllaillslllqvl 141
                      ++g+++al++++v+   +        fg+++         + +maF++l+++  f++l     r+  ++k  g+ +  k+l+ a l+  +l++ 
       KKY18427.1  17 GIGVVTALSGVVVLVRSYArwrlirHFGWDDGL------ICLAMAFNILIMALSFQVLKYGAgRHIYVLKTAGMVQLyKWLVAAQLVY-MLALY 103
                      455566666665554444444444455888877......499***************9998844556666667764425666666555.59999 PP

  Cation_ATPase_C 142 ivyvpglnavfgtaplsleewlialllalvvllv 175
                      ++ + gl+ + +++pl+ + + + + +++v+ ++
       KKY18427.1 104 VCRISGLAFYARLNPLPRYRLYLWISFGFVTAVY 137
                      9***************************999876 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.025
  Cation_ATPase_C 125 nkllllaillslllqvlivyvpglnavfgtaplsleewlialllalvvll 174
                      +k +++++++++++   +v+v +ln vf ++        +a++l++ v++
       KKY18427.1 165 SKAVFISTAVMTIVCDSLVLVLPLNIVFTVKASLTRKISLAVVLCFGVFI 214
                      56777777777776666667755999999998888888888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2861.44
//
Query:       KKY18428.1  [L=322]
Description: putative benzoate 4-monooxygenase cytochrome p450 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-43  147.7   0.0    5.5e-42  144.1   0.0    1.9  1  p450      Cytochrome P450
     0.0066   16.6   0.0        4.7    7.5   0.0    2.5  2  DUF1992   Domain of unknown function (DUF1992)


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.1   0.0   6.2e-46   5.5e-42     101     400 ..      16     296 ..       3     299 .. 0.84

  Alignments for each domain:
  == domain 1  score: 144.1 bits;  conditional E-value: 6.2e-46
                 HHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHT CS
        p450 101 fltptltsfgklsleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllk 199
                 +     +s+ + + e++v+ + + + +++++ +++ + ++  ++++++a+dv+g+++F++ f  +e+    ++ +a+ +        +   l +  + +
  KKY18428.1  16 LASGYALSN-IIKSEPYVDAILDTMEKQFDRLTKQGKPIEFDKWFNYFAFDVVGEVTFSKAFRFVETGT--DIRNAISNT-------RALALYIAIMGH 104
                 444445555.56789***********************************************9888884..466666555.......333333333456 PP

                 CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH CS
        p450 200 ylptkllrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqek 298
                 y++ + +   +        ll +l  + r +       r+d++   l  +  ++ ++ + + e+   +   ++aG dT s tl+  +y+L++nP++ ++
  KKY18428.1 105 YVWLHNWTLGN-------PLLSRLALDERNKNPAV---RNDMMERWLGVR--RQYPDRMAESEIFGAAVANIGAGADTASGTLQGLFYFLLRNPHHLQR 191
                 66666665555.......45666666666655555...89*********8..444457***************************************** PP

                 HHHHHHHHCCTTT...T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS.CEEETTEEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TT CS
        p450 299 lreEidevlgdkr...eptyddlqklpyldavikEtLRlhpvvplllpRevtk.dvvirgylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldek 392
                 lreEid +  + +    + y++ qklp+l+a+ikEt R+hp+vp++l+R+v+   ++i g+++ +Gt+ +vn++  hr+pe+f p+ e+F+peR+ld++
  KKY18428.1 192 LREEIDAAQARGElsdIVAYNEGQKLPFLQACIKETYRYHPAVPSGLSRVVPPgGITIAGRFFTEGTILSVNPWVFHRNPELFgPDCESFNPERWLDAD 290
                 ******999887778899*********************************9989*******************************************9 PP

                 SCTESSCT CS
        p450 393 gnskrksf 400
                  +  ++ +
  KKY18428.1 291 RA--KQMD 296
                 83..4444 PP

>> DUF1992  Domain of unknown function (DUF1992)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00052       4.7      14      29 ..      42      57 ..      33      64 .. 0.84
   2 !    6.5   0.0    0.0011       9.4       5      27 ..     195     219 ..     194     231 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00052
     DUF1992 14 eFdnlpgrGKPLpldd 29
                +Fd l ++GKP++ d+
  KKY18428.1 42 QFDRLTKQGKPIEFDK 57
                8***********9854 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0011
     DUF1992   5 rIreAierGeFdnlpg..rGKPLpl 27 
                  I +A++rGe++++    +G++Lp 
  KKY18428.1 195 EIDAAQARGELSDIVAynEGQKLPF 219
                 699********88554469999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.33s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2043.61
//
Query:       KKY18429.1  [L=618]
Description: putative double-strand-break repair protein rad21 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-34  118.4   0.0      3e-34  117.5   0.0    1.5  1  Rad21_Rec8_N  N terminus of Rad21 / Rec8 like protein
    1.2e-08   34.1   0.3    2.4e-08   33.1   0.3    1.5  1  Rad21_Rec8    Conserved region of Rad21 / Rec8 like protein


Domain annotation for each model (and alignments):
>> Rad21_Rec8_N  N terminus of Rad21 / Rec8 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.5   0.0   3.3e-38     3e-34       1     105 [.       1     105 [.       1     110 [. 0.91

  Alignments for each domain:
  == domain 1  score: 117.5 bits;  conditional E-value: 3.3e-38
  Rad21_Rec8_N   1 MfysqellskkgplakvWlaAtlekklskkeilevniekaveeIlnp.eaplaLrlsgqLllGvvriyskkvkyllsDceealekikkafksikeak 96 
                   Mfy+++ll + g+l++vW+aA+le+klsk++il+ +iek v++I++p + p+aLrls+qLllGvvriy +k++yl++Dc++al kik+a++ +k ++
    KKY18429.1   1 MFYHEKLLGSAGALGRVWIAANLERKLSKTHILQSDIEKDVQTIVDPgQTPMALRLSSQLLLGVVRIYGRKARYLMDDCNDALGKIKMAYRITK-NS 96 
                   9*********************************************8577*****************************************664.56 PP

  Rad21_Rec8_N  97 idlpeekka 105
                    dl e +++
    KKY18429.1  97 NDLAEGANQ 105
                   676664433 PP

>> Rad21_Rec8  Conserved region of Rad21 / Rec8 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.3   2.7e-12   2.4e-08       7      41 ..     541     576 ..     535     579 .. 0.82

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 2.7e-12
                 T-----.-----HHHHHHHHHHHHHHHHTSEEEEES CS
  Rad21_Rec8   7 slsllp.agktRkeAArlFyelLvLatkgvIkvkQe 41 
                 + +l p + ++++ A ++F+e+LvLatk++Ikv+Q+
  KKY18429.1 541 FQDLFPeQKTSKEDATKMFFEVLVLATKDAIKVEQS 576
                 55566645678899*********************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.50
# Mc/sec: 3743.05
//
Query:       KKY18430.1  [L=1031]
Description: putative calcium mangenease p-type [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-47  160.4   0.2    3.1e-47  160.4   0.2    2.5  3  E1-E2_ATPase     E1-E2 ATPase
    2.5e-44  151.1   0.5    2.5e-44  151.1   0.5    2.3  2  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    6.2e-20   72.4   3.1    1.7e-18   67.7   3.1    2.7  1  Hydrolase        haloacid dehalogenase-like hydrolase
    6.6e-19   67.4   0.0    1.3e-18   66.4   0.0    1.5  1  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    4.8e-12   45.8   0.0    9.6e-12   44.8   0.0    1.5  1  Cation_ATPase    Cation transport ATPase (P-type)
    4.1e-05   23.5   1.8     0.0015   18.3   0.7    2.3  2  Hydrolase_3      haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.6      0.77   2.3e+03     117     156 ..      58      98 ..      55     102 .. 0.58
   2 !  160.4   0.2     1e-50   3.1e-47      14     181 .]     158     365 ..     128     365 .. 0.94
   3 ?   -4.4   0.2       3.9   1.2e+04     115     147 ..     795     827 ..     780     834 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.77
                   HHHHHHHHHHHHHHHHHHHS-STTTSSTT.HHHHHHHHHHH CS
  E1-E2_ATPase 117 klgkvlvpvvlliallvflialllgksla.eallralallv 156
                   +++k++  + +l++l+ ++i +++g+     +++ a++++v
    KKY18430.1  58 RFMKQFKETLILLLLASAAISFFMGNLDDaVSITLAVTIVV 98 
                   56666666666666666666666666553244444444444 PP

  == domain 2  score: 160.4 bits;  conditional E-value: 1e-50
                   S-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.EEE-TTTS---S-EE-.......................................G-TTEE CS
  E1-E2_ATPase  14 teeeidakelvpGDivllkagdrvpaDgrivegsa.evdesaLTGEslpvek.......................................ekgdmv 70 
                     ++++a +lv+GD+vl+ +gdr+paD+ri +  + ++des LTGE++pv k                                       e+++ +
    KKY18430.1 158 GSMTVPATQLVVGDLVLFSTGDRIPADIRITQAADlTLDESNLTGENEPVVKyidaiersqvgsggnispprspmfaspaagtvgadvrlnEQHNIA 254
                   3455**************************************************************************************99***** PP

                   -TT-EEEE-EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHH CS
  E1-E2_ATPase  71 fsGtvvvsgeakavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplav 167
                   f+Gt v sg  +++V+atg  te+g i ++++e +s +tplq  +d+lgk l+ ++++++ l+++i l+ g++l ++++ +++l+vaaiP++Lp++v
    KKY18430.1 255 FMGTLVRSGYGEGIVIATGARTEFGSISASLQEIESPRTPLQLSMDRLGKELSYMSFIVIGLIAVIGLIQGRNLLDMFTIGVSLAVAAIPEGLPIIV 351
                   ************************************************************************************************* PP

                   HHHHHHHHHHHHHT CS
  E1-E2_ATPase 168 plalalgarrlakk 181
                   +++lalg+ r+ak+
    KKY18430.1 352 TVTLALGVLRMAKR 365
                   ************96 PP

  == domain 3  score: -4.4 bits;  conditional E-value: 3.9
                   HHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHH CS
  E1-E2_ATPase 115 ldklgkvlvpvvlliallvflialllgkslaea 147
                   +++++ +   ++++++ lv+l +l+ +k++ +a
    KKY18430.1 795 IQNFITFQLSTSVAALSLVLLSTLFGFKNPLNA 827
                   455555555566666666666666666666544 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.9       0.3     9e+02     129     176 ..     307     353 ..     294     357 .. 0.83
   2 !  151.1   0.5   8.5e-48   2.5e-44       2     181 ..     823    1012 ..     822    1013 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.3
  Cation_ATPase_C 129 llaillslllqvlivyvpglnavfgtaplsleewlialllalvvllvd 176
                       ++ ++ ++l+++i +++ +++++++  ++++  + a++ +l +++ +
       KKY18430.1 307 SYMSFIVIGLIAVIGLIQ-GRNLLDMFTIGVSLAVAAIPEGLPIIVTV 353
                      577889999999999998.99999999999999988888888887765 PP

  == domain 2  score: 151.1 bits;  conditional E-value: 8.5e-48
  Cation_ATPase_C    2 lplsaiqiLwinLvtDllpalaLaleppekdimkrpPrkkkepliskkmlrriliqgllqalvtllvffltlllfgisekenkls....... 86  
                       +pl+a+qiLwin+++D+ pa +L++ep +++im++pPr k++ +++++++rr+l+ ++++ + t++v++  +  + +++             
       KKY18430.1  823 NPLNAMQILWINILMDGPPAQSLGVEPVDPRIMSQPPRAKNARVLTRRLIRRVLTSAAIIMMGTIAVYIQEMTED-ANDI----Tsasstvp 909 
                       7*******************************************************************7777633.2222....12224667 PP

  Cation_ATPase_C   87 .......snyaqtmaFitlvlsqifnalnlrsrreslfkfsglf..snkllllaillslllqvlivyvpglnavfgtaplsleewliallla 169 
                               ++  tm+F+t+vl+ +fnal++rs+ +s++    l+   nk++ +a+++sll q++++y p+l++vf+t+ l+l +++ +l+la
       KKY18430.1  910 thhakivTRRDTTMTFTTFVLFDMFNALTCRSEAKSVLL-GELKlfGNKMFNYAVAGSLLGQACVIYLPFLQSVFQTEALGLGDLIKLLCLA 1000
                       777888899***********************9999887.555555********************************************** PP

  Cation_ATPase_C  170 lvvllvdelvKl 181 
                       + v++vde++K+
       KKY18430.1 1001 SSVFWVDEARKY 1012
                       ***********8 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   3.1   5.7e-22   1.7e-18       1     210 []     381     752 ..     381     752 .. 0.71

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 5.7e-22
                 SSEEEEESBTTTBCHHHHHHHHHHHH..................CHHHHHHHHHHHHCHHHHHHHHHHHHH.......HHHHHHHHHETTTE....... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxx....... RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsa..................alalaaaletgsehpigkalvaaakar.......sgaltgfatfigrg....... 67 
                 +++v+ Dk+GTLt  ++ v++ +                     +            + i++    a +ar       s+a++  a+            
  KKY18430.1 381 VNVVCSDKTGTLTLNHMTVTKMWHFDagmpfdlekdvlnhpgpaT------------RTIFRVGNIANNARlssananSPATAASAA----Ilsstqds 463
                 699**********************98888844444444443331............333333322222222222111222211111....01112222 PP

                 ........................................................................HHHHTHHHHHHHH.HCHHHHHHHHHHH CS
                 ........................................................................xxxxxxxxxxxxx.xxxxxxxxxxxxx RF
   Hydrolase  68 ........................................................................ayaigkpewltal.dippdlgaaigsa 93 
                                                                                         ay +g  e + +  d +   + +   +
  KKY18430.1 464 ssssvksrwvgqptdvavldlldafgeddvrerigprvmetpfsserkwmgviiggtiqestgyhyggqvevAYIKGAMEQVLKRcDTYLTKDGREVIL 562
                 233333333445555555556566666666667777777766666666666666666666666666666666666666665555543333333333333 PP

                 HHHCHHHHHH..............................................................TTHHHHHHHHHHTHHBHTTHHHHHHHH CS
                 xxxxxxxxxx..............................................................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  94 qsqgrtvall..............................................................qaralavftiadplkvkpeaaeavasL 130
                          +                                                                   +++ + dp  +++++   +++L
  KKY18430.1 563 ---------DdarrkeafnaaksmaeeglrvigfasgatakrngyssrsntprphlerspsqkinddestytGLCFSGMVGMNDP--PRKDVHRSIRRL 650
                 .........2666666666*********************************************9887777655888999999**..************ PP

                 HHTTEEEEEEESSEHHHHHHHHHHTT..................GGGE.SEEEEHHCES...STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxx.xxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 131 kaagievvlltgdnpetaeraanqlG..................ddyf.daviasdiet...vakpspegkvaaireLqgkpeevamVGDgvnDaaala 207
                  + g++v+++tgd ++ta ++a++lG                   d++ +a+++  i+    +a  spe+k +++r Lq+++  vam GDgvnDa+al+
  KKY18430.1 651 MSGGVKVIMITGDAETTAVAIARKLGmpinasaaggnqvlrgedLDHMtEAELSDAIVRtsiFARTSPEHKMKIVRALQARGDVVAMTGDGVNDAPALK 749
                 ******************************999999888877664444455555555558999************************************ PP

                 HTT CS
                 xxx RF
   Hydrolase 208 aAg 210
                 +A+
  KKY18430.1 750 KAD 752
                 *98 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   4.3e-22   1.3e-18       4      69 .]      13      78 ..      10      78 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 4.3e-22
  Cation_ATPase_N  4 lsleevlekLetdlenGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalvs 69
                       +++v+++L t+l++GL+ +ea+ rl + GpNel+++ +++lw ++ kqf+  l++lLl++a++s
       KKY18430.1 13 IRPQDVADRLSTSLTHGLSLSEAQSRLIRDGPNELPHEDPEPLWLRFMKQFKETLILLLLASAAIS 78
                     56799***********************************************************98 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   3.2e-15   9.6e-12       9      90 ..     462     551 ..     434     552 .. 0.83

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 3.2e-15
  Cation_ATPase   9 sensekdevkllGnktEsALlvlaeklgldteelreetkkvqeipFnssrKrmsvvlkle.........pekkvrlyvKGApeiilkrCth 90 
                    + +s+  +   +G++t++A l l +++  + +  ++  ++v e pF+s+rK+m+v++  +           ++ ++y+KGA e +lkrC++
     KKY18430.1 462 DSSSSSVKSRWVGQPTDVAVLDLLDAF-GEDDVRERIGPRVMETPFSSERKWMGVIIGGTiqestgyhyGGQVEVAYIKGAMEQVLKRCDT 551
                    45556666779****************.5556667789*******************988999****9999999***************87 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.013        37      20      81 ..     643     705 ..     636     724 .. 0.80
   2 !   18.3   0.7     5e-07    0.0015     195     255 .]     724     785 ..     719     785 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.013
                  HHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGGTEE.ECTTTEEEEE--B-H CS
  Hydrolase_3  20 tkeaikklkekgikvviATGRslravlpvleelgldlpvialNGali.ddekgkilykstisk 81 
                    + i++l++ g+kv+  TG   +++  ++++lg+   + a+ G  + + e+   + + ++s 
   KKY18430.1 643 VHRSIRRLMSGGVKVIMITGDAETTAVAIARKLGMPINASAAGGNQVlRGEDLDHMTEAELSD 705
                  6789******************************99888888888886555555555555555 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 5e-07
                  HHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETT.S-HHHHHHSSEEE--GGGTHHHHHH CS
  Hydrolase_3 195 lakelnisleeviafGDgeNDieMLeaaglgvAmgn.aseevkkaAdyvtksnnedGVakal 255
                  ++  l+   + v+  GDg ND + L++a++g+ mg  +++ +k+aAd++ ++ + + +++a+
   KKY18430.1 724 IVRALQARGDVVAMTGDGVNDAPALKKADIGISMGLlGTDVAKEAADMILTDDDFSTILRAI 785
                  566788888999999********************549***********9999888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1031 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.49
# Mc/sec: 6353.09
//
Query:       KKY18431.1  [L=955]
Description: putative ankyrin repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-54  180.6   4.9    3.6e-13   49.9   0.1    5.3  6  Ank_2        Ankyrin repeats (3 copies)
    8.1e-36  120.9  20.7    3.2e-05   24.2   0.1    9.2  8  Ank          Ankyrin repeat
      1e-35  121.3   9.6      2e-10   40.7   0.1    6.3  6  Ank_5        Ankyrin repeats (many copies)
      1e-32  112.1   3.1    1.5e-07   31.8   0.1    7.7  9  Ank_4        Ankyrin repeats (many copies)
    7.4e-31  102.7   7.4     0.0011   19.2   0.0   10.2 10  Ank_3        Ankyrin repeat
    4.9e-05   22.8   0.6    0.00014   21.3   0.6    1.8  1  Helo_like_N  Fungal N-terminal domain of STAND proteins
     0.0012   18.9   1.1     0.0026   17.8   0.2    2.1  1  TPR_8        Tetratricopeptide repeat
     0.0096   16.1   0.1     0.0096   16.1   0.1    2.3  3  SesA         N-terminal domain on NACHT_NTPase and P-loop NTP
  ------ inclusion threshold ------
       0.15   11.9   0.1       0.15   11.9   0.1    1.9  2  TPR_1        Tetratricopeptide repeat
       0.17   12.1   1.1        1.6    9.0   0.0    2.5  2  TPR_2        Tetratricopeptide repeat
       0.41   10.8   6.3       0.77    9.9   2.7    2.5  2  COG5         Golgi transport complex subunit 5


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   5.1e-11   8.3e-08      14      82 ..     500     594 ..     492     595 .. 0.79
   2 !   39.3   0.0   4.5e-13   7.3e-10       1      83 []     520     629 ..     520     629 .. 0.78
   3 !   49.9   0.1   2.2e-16   3.6e-13       1      80 [.     603     692 ..     603     694 .. 0.88
   4 !   36.0   0.0   4.7e-12   7.7e-09      25      82 ..     726     791 ..     709     792 .. 0.82
   5 !   36.3   0.0   3.9e-12   6.3e-09       1      63 [.     731     805 ..     731     810 .. 0.84
   6 !   26.2   0.0   5.7e-09   9.2e-06      38      80 ..     844     892 ..     834     924 .. 0.68

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 5.1e-11
       Ank_2  14 klLl.egadpn.k..ngktaLhyAakngnleivklLle.....h..............ad...ndgrtpLhyAarsghleivklLlekgadinlk 82 
                   L+ +++dpn k  +   +L++Aak g ++iv+ ++      +              +d   ++g tpL++Aa+ +hl +vk+ le +a++ +k
  KKY18431.1 500 STLIhNNFDPNsKtfDSDLVLYWAAKTGEEHIVRQIIRgfsvtYgqkknkarvikaknLDlisSEGFTPLMAAASRNHLGTVKIILEANAKVYTK 594
                 567779999997478889*******************8665551555566666665443366688*********99**********999988765 PP

  == domain 2  score: 39.3 bits;  conditional E-value: 4.5e-13
       Ank_2   1 LhlAakngnlelvklLleg.................adpnk......ngktaLhyAakngnleivklLleh.......adndgrtpLhyAarsghleiv 69 
                 L++Aak g  ++v++++ g                 +   +      +g t+L++Aa++++l +vk++le+       ++ d rt+Lh+ a  g l+i+
  KKY18431.1 520 LYWAAKTGEEHIVRQIIRGfsvtygqkknkarvikaK---NldlissEGFTPLMAAASRNHLGTVKIILEAnakvytkTKTDKRTALHIIALRGLLRII 615
                 789***99889******66445655655554444322...1335568**********************955567654448899***999999****** PP

       Ank_2  70 klLlekgadinlkd 83 
                 + Ll+ ga+++ +d
  KKY18431.1 616 QPLLDAGAEVDSQD 629
                 ****99***99887 PP

  == domain 3  score: 49.9 bits;  conditional E-value: 2.2e-16
       Ank_2   1 LhlAakngnlelvklLl.egadpn.k..ngktaLhyAakngnleivklLleh.ad.....ndgrtpLhyAarsghleivklLlekgadin 80 
                 Lh+ a+ g l +++ Ll +ga+++ +   g+t+Lh+Aa++g  ++v +L+++ a+       g tpLh+A+ + ++e+v  Ll +ga+++
  KKY18431.1 603 LHIIALRGLLRIIQPLLdAGAEVDsQdgLGNTPLHIAASRGESDMVAALISAgANceaktAAGCTPLHLAVLFRQEEVVGTLLHHGAKVD 692
                 89999999779*******999999745899********************977443343566*********************99*9987 PP

  == domain 4  score: 36.0 bits;  conditional E-value: 4.7e-12
       Ank_2  25 ngktaLhyAakngnleivklLle..h.ad.....ndgrtpLhyAarsghleivklLlekgadinlk 82 
                 +  t+Lh++a ng++ i++lLl   + ad      dgrtpLh A+  g++  v lLlekga+i+ +
  KKY18431.1 726 QQPTVLHLSATNGDNRILSLLLLpaFkADieaptADGRTPLHTAVLAGQISSVTLLLEKGANIDGR 791
                 567***************999943336334455699**************************9866 PP

  == domain 5  score: 36.3 bits;  conditional E-value: 3.9e-12
       Ank_2   1 LhlAakngnlelvklLl...egadpn.k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAars 63 
                 Lhl a ng++ ++ lLl   ++ad++    +g+t+Lh+A+ +g++  v lLle+       d +grt+L +Aa  
  KKY18431.1 731 LHLSATNGDNRILSLLLlpaFKADIEaPtaDGRTPLHTAVLAGQISSVTLLLEKganidgRDVHGRTALSFAAGM 805
                 89999999889*****88888888887257*************8888*****988665555589*******9955 PP

  == domain 6  score: 26.2 bits;  conditional E-value: 5.7e-09
       Ank_2  38 nleivklLleh....ad..ndgrtpLhyAarsghleivklLlekgadin 80 
                 + e+++ Ll++    ++   dg tpLh+Aa++g l +++lLl++gad+ 
  KKY18431.1 844 HMELIRHLLDNgaspLNreTDGCTPLHVAAFEGDLPAARLLLQYGADPL 892
                 3355777777666663344667777777777777777777777777764 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   8.9e-05      0.15       2      25 ..     565     587 ..     564     596 .. 0.80
   2 !   16.3   0.0     6e-06    0.0097       2      31 ..     599     629 ..     598     630 .. 0.90
   3 !   24.2   0.1     2e-08   3.2e-05       2      31 ..     632     662 ..     631     663 .. 0.93
   4 !   20.6   0.1   2.7e-07   0.00043       2      28 ..     665     692 ..     664     695 .. 0.89
   5 !   11.9   0.2   0.00015      0.25       4      30 ..     729     758 ..     729     760 .. 0.83
   6 !   20.2   0.0   3.4e-07   0.00056       1      30 [.     761     791 ..     761     793 .. 0.90
   7 ?    1.9   0.3      0.21   3.4e+02       2      28 ..     795     860 ..     794     863 .. 0.45
   8 !   20.4   0.0   3.2e-07   0.00051       1      27 [.     864     891 ..     864     895 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.9e-05
                 SBBHHHHHHHHTTHHHHHHHHTTT CS
         Ank   2 GnTPLHlAatngkkriiklLLhGA 25 
                 G+TPL+ Aa+++++  +k +L  A
  KKY18431.1 565 GFTPLMAAASRNHLGTVKIIL-EA 587
                 9********999988999888.33 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 6e-06
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                  +T+LH+ a +g +rii+ LL  GA+++++d
  KKY18431.1 599 KRTALHIIALRGLLRIIQPLLdAGAEVDSQD 629
                 58****88889**********67*****998 PP

  == domain 3  score: 24.2 bits;  conditional E-value: 2e-08
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 GnTPLH+Aa++g  +++ +L+  GAn  a++
  KKY18431.1 632 GNTPLHIAASRGESDMVAALIsAGANCEAKT 662
                 9********************77***99987 PP

  == domain 4  score: 20.6 bits;  conditional E-value: 2.7e-07
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnln 28 
                 G+TPLHlA+ + +++++  LL hGA ++
  KKY18431.1 665 GCTPLHLAVLFRQEEVVGTLLhHGAKVD 692
                 9********888889******88*9874 PP

  == domain 5  score: 11.9 bits;  conditional E-value: 0.00015
                 BHHHHHHHHTTHHHHHHHH..T.TTSTTCB CS
         Ank   4 TPLHlAatngkkriiklLL..h.GAnlnal 30 
                 T+LHl atng+ ri++lLL     A++ a 
  KKY18431.1 729 TVLHLSATNGDNRILSLLLlpAfKADIEAP 758
                 99**************98867436888775 PP

  == domain 6  score: 20.2 bits;  conditional E-value: 3.4e-07
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnal 30 
                 dG+TPLH A+  g+ + + lLL +GAn++ +
  KKY18431.1 761 DGRTPLHTAVLAGQISSVTLLLeKGANIDGR 791
                 8*********999999******99***9855 PP

  == domain 7  score: 1.9 bits;  conditional E-value: 0.21
                 SBBHHHHH..........................HHHTT..............HHHHHHHH.TTTST.T CS
         Ank   2 GnTPLHlA..........................atngk..............kriiklLL.hGAnl.n 28 
                 G+T+L  A                          +   +               + i+ LL +GA++ n
  KKY18431.1 795 GRTALSFAagmgamdqapkplrrhlstspaplspS---SpsnssaisdgnpihMELIRHLLdNGASPlN 860
                 77777776233333332222222222222222220...0222334444446667799999977988635 PP

  == domain 8  score: 20.4 bits;  conditional E-value: 3.2e-07
                 TSBBHHHHHHHHTTHHHHHHHH.TTTST CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnl 27 
                 dG+TPLH+Aa +g++  ++lLL +GA++
  KKY18431.1 864 DGCTPLHVAAFEGDLPAARLLLqYGADP 891
                 9*********9999********77***8 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.2   1.9e+03       3      27 ..     504     527 ..     502     531 .. 0.77
   2 !   19.3   0.0   6.4e-07     0.001       9      55 ..     558     605 ..     553     614 .. 0.88
   3 !   40.7   0.1   1.2e-13     2e-10       1      56 []     618     672 ..     618     672 .. 0.99
   4 !   18.5   0.1   1.1e-06    0.0018      18      56 .]     729     769 ..     719     769 .. 0.93
   5 !   26.3   0.0     4e-09   6.5e-06      15      56 .]     761     802 ..     753     802 .. 0.91
   6 !   28.9   0.4   6.4e-10     1e-06       1      56 []     851     905 ..     851     905 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.2
       Ank_5   3 ehgpadvnrldgggntpLhvAakyg 27 
                 ++   d+n +  ++ ++L +Aak g
  KKY18431.1 504 HNN-FDPNSKTFDSDLVLYWAAKTG 527
                 444.678888888889999999976 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 6.4e-07
       Ank_5   9 vnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG.ltaldl 55 
                 ++    +g+tpL+ Aa+++++  v+++l+ +a   ++++   +tal++
  KKY18431.1 558 LDLISSEGFTPLMAAASRNHLGTVKIILEANAKVYTKTKTDkRTALHI 605
                 556667899*******************99999999999999999987 PP

  == domain 3  score: 40.7 bits;  conditional E-value: 1.2e-13
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 Ll++g a v+ +dg gntpLh+Aa++g +d+v  L+  ga++ ++++ G t+l+lA
  KKY18431.1 618 LLDAG-AEVDSQDGLGNTPLHIAASRGESDMVAALISAGANCEAKTAAGCTPLHLA 672
                 89***.************************************************98 PP

  == domain 4  score: 18.5 bits;  conditional E-value: 1.1e-06
       Ank_5  18 tpLhvAakygaadvvrlLl..argadlnltdsrGltaldlA 56 
                 t+Lh++a +g  +++ lLl  a+ ad+ + +++G+t+l+ A
  KKY18431.1 729 TVLHLSATNGDNRILSLLLlpAFKADIEAPTADGRTPLHTA 769
                 9*************************************987 PP

  == domain 5  score: 26.3 bits;  conditional E-value: 4e-09
       Ank_5  15 ggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 +g tpLh+A+ +g  + v lLl+ ga+++ +d +G+tal +A
  KKY18431.1 761 DGRTPLHTAVLAGQISSVTLLLEKGANIDGRDVHGRTALSFA 802
                 577************************************987 PP

  == domain 6  score: 28.9 bits;  conditional E-value: 6.4e-10
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 Ll++g a++ +++ +g tpLhvAa  g ++ +rlLl +gad+ l  + Glta  lA
  KKY18431.1 851 LLDNG-ASPLNRETDGCTPLHVAAFEGDLPAARLLLQYGADPLLERAGGLTARNLA 905
                 89***.88888888888***********************************9887 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.23   3.8e+02      14      51 ..     496     532 ..     484     533 .. 0.80
   2 !    7.0   0.0    0.0057       9.4      29      52 ..     560     582 ..     551     585 .. 0.79
   3 !   15.4   0.1   1.3e-05     0.021       3      46 ..     567     610 ..     565     616 .. 0.89
   4 !   31.8   0.1   9.4e-11   1.5e-07       2      55 .]     600     652 ..     599     652 .. 0.97
   5 !   19.4   0.0   7.3e-07    0.0012      14      55 .]     645     685 ..     642     685 .. 0.92
   6 !   23.7   0.0   3.3e-08   5.4e-05       3      55 .]     729     782 ..     727     782 .. 0.92
   7 !   25.6   0.0     8e-09   1.3e-05       1      46 [.     762     806 ..     762     811 .. 0.94
   8 !   18.4   0.0   1.5e-06    0.0024      13      55 .]     844     885 ..     844     885 .. 0.96
   9 !   15.8   0.0   9.7e-06     0.016       3      42 ..     867     905 ..     867     917 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.23
       Ank_4  14 lelvrlLlekgadinaqdnrsGetalhiAakrgnveil 51 
                   ++  L+ ++ d+n     + +  l+ Aak+g  +i+
  KKY18431.1 496 PLTLSTLIHNNFDPNSK-TFDSDLVLYWAAKTGEEHIV 532
                 5578899999******9.555999*******9988877 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0057
       Ank_4  29 aqdnrsGetalhiAakrgnveilk 52 
                    +++G+t+l  Aa+r+++  +k
  KKY18431.1 560 LI-SSEGFTPLMAAASRNHLGTVK 582
                 44.789*************87776 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 1.3e-05
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrg 46 
                 t+L +aa+ ++l +v+++le +a ++  +  + +talhi a+rg
  KKY18431.1 567 TPLMAAASRNHLGTVKIILEANAKVYTKTKTDKRTALHIIALRG 610
                 78999***********************8899******966665 PP

  == domain 4  score: 31.8 bits;  conditional E-value: 9.4e-11
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +taLh  a  g l++++ Ll+ ga+++ q ++ G+t+lhiAa+rg  +++  L+
  KKY18431.1 600 RTALHIIALRGLLRIIQPLLDAGAEVDSQ-DGLGNTPLHIAASRGESDMVAALI 652
                 79***************************.********************9987 PP

  == domain 5  score: 19.4 bits;  conditional E-value: 7.3e-07
       Ank_4  14 lelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                  ++v+ L++ ga++ a   + G t+lh A+++ + e++  Ll
  KKY18431.1 645 SDMVAALISAGANCEAK-TAAGCTPLHLAVLFRQEEVVGTLL 685
                 58**************9.******************998776 PP

  == domain 6  score: 23.7 bits;  conditional E-value: 3.3e-08
       Ank_4   3 taLhyaaisgrlelvrlLl..ekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+Lh  a  g+ +++ lLl  +++adi a   ++G+t+lh A++ g+++ + lLl
  KKY18431.1 729 TVLHLSATNGDNRILSLLLlpAFKADIEAP-TADGRTPLHTAVLAGQISSVTLLL 782
                 67888888999999999999999******8.**********************98 PP

  == domain 7  score: 25.6 bits;  conditional E-value: 8e-09
       Ank_4   1 eltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrg 46 
                 ++t+Lh a+ +g++ +v lLlekga+i+ + +  G+tal +Aa +g
  KKY18431.1 762 GRTPLHTAVLAGQISSVTLLLEKGANIDGR-DVHGRTALSFAAGMG 806
                 589***************************.999*********988 PP

  == domain 8  score: 18.4 bits;  conditional E-value: 1.5e-06
       Ank_4  13 rlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++el+r Ll++ga++  +   +G t+lh Aa  g++ +++lLl
  KKY18431.1 844 HMELIRHLLDNGASPLNR-ETDGCTPLHVAAFEGDLPAARLLL 885
                 799***********9999.899*******************98 PP

  == domain 9  score: 15.8 bits;  conditional E-value: 9.7e-06
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiA 42 
                 t+Lh aa +g+l+++rlLl++gad+     + G+ta   A
  KKY18431.1 867 TPLHVAAFEGDLPAARLLLQYGADPLL-ERAGGLTARNLA 905
                 79**********************654.246777775555 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.8     3e+03       5      23 ..     519     537 ..     517     542 .. 0.85
   2 !   10.2   0.0    0.0006      0.98       1      30 [.     564     592 ..     564     593 .. 0.88
   3 ?    6.3   0.0     0.011        18       2      30 ..     599     626 ..     598     627 .. 0.90
   4 !   19.2   0.0   6.9e-07    0.0011       2      29 ..     632     658 ..     631     660 .. 0.93
   5 !   13.8   0.0     4e-05     0.065       2      30 ..     665     692 ..     664     693 .. 0.94
   6 ?    4.8   0.0     0.035        57       4      29 ..     729     755 ..     727     757 .. 0.85
   7 !   18.2   0.0   1.5e-06    0.0025       1      30 [.     761     789 ..     761     790 .. 0.94
   8 ?    1.1   0.0      0.54   8.8e+02       1      14 [.     794     807 ..     794     809 .. 0.86
   9 ?    2.3   0.0      0.23   3.8e+02       9      29 ..     836     858 ..     832     860 .. 0.77
  10 !   18.7   0.0     1e-06    0.0017       1      29 [.     864     891 ..     864     893 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.8
       Ank_3   5 pLhlAarsgnleivkfLle 23 
                  L++Aa+ g   iv+ +++
  KKY18431.1 519 VLYWAAKTGEEHIVRQIIR 537
                 5899******99*****99 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0006
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G tpL+ Aa+ ++l  vk +le  +a v+
  KKY18431.1 564 EGFTPLMAAASRNHLGTVKIILE-ANAKVY 592
                 589************77******.787775 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.011
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                  +t+Lh+ a+ g l i++ Ll+  ga+v+
  KKY18431.1 599 KRTALHIIALRGLLRIIQPLLD-AGAEVD 626
                 69****************9999.899876 PP

  == domain 4  score: 19.2 bits;  conditional E-value: 6.9e-07
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G+tpLh+Aa+ g  ++v +L+   ga++
  KKY18431.1 632 GNTPLHIAASRGESDMVAALIS-AGANC 658
                 9*********************.89987 PP

  == domain 5  score: 13.8 bits;  conditional E-value: 4e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+tpLhlA+++   e+v  Ll  +ga v+
  KKY18431.1 665 GCTPLHLAVLFRQEEVVGTLLH-HGAKVD 692
                 99********************.8*9987 PP

  == domain 6  score: 4.8 bits;  conditional E-value: 0.035
       Ank_3   4 tpLhlAarsgnleivkfLle.nkgadv 29 
                 t Lhl a +g+  i+ +Ll   + ad+
  KKY18431.1 729 TVLHLSATNGDNRILSLLLLpAFKADI 755
                 89***********9**99986666666 PP

  == domain 7  score: 18.2 bits;  conditional E-value: 1.5e-06
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G+tpLh+A+++g ++ v +Lle kga+++
  KKY18431.1 761 DGRTPLHTAVLAGQISSVTLLLE-KGANID 789
                 69*************88******.9***97 PP

  == domain 8  score: 1.1 bits;  conditional E-value: 0.54
       Ank_3   1 nGetpLhlAarsgn 14 
                 +G+t+L +Aa  g 
  KKY18431.1 794 HGRTALSFAAGMGA 807
                 79********9875 PP

  == domain 9  score: 2.3 bits;  conditional E-value: 0.23
       Ank_3   9 Aarsgnl...eivkfLlenkgadv 29 
                 A++ gn+   e+++ Ll+ +ga +
  KKY18431.1 836 AISDGNPihmELIRHLLD-NGASP 858
                 778888854457******.78865 PP

  == domain 10  score: 18.7 bits;  conditional E-value: 1e-06
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 +G+tpLh+Aa  g+l+ +++Ll+ +gad+
  KKY18431.1 864 DGCTPLHVAAFEGDLPAARLLLQ-YGADP 891
                 69*********************.****8 PP

>> Helo_like_N  Fungal N-terminal domain of STAND proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.6   8.5e-08   0.00014       1     145 [.       1     159 [.       1     215 [. 0.77

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 8.5e-08
  Helo_like_N   1 adplsiasgvlalvtfalqssksLyetvksfrsrdktvreLkeeleaLeevLesLee.v............avaeeeselalLklpllrCgkaCkefe 85 
                  +dplsi+  v a +++a++  ++Ly+  +  ++ d+++ +L +e +   + L+sL++ +            +++++++ +++ +  +  C+k+   ++
   KKY18431.1   1 MDPLSITGFVGASAKVAFDVGTTLYKFARAAKDIDQNISDLSSEATGVGQSLSSLKKtLatpivrnihasgTSRRDQALWESVNGSVADCHKTLWRLQ 98 
                  69******************************************998888888887754222222221111134556667889999999999999999 PP

  Helo_like_N  86 qvikkcskkssksrtsfrDw...akleymggdindfketlagYKsTisiaLgdinlrkskvta 145
                  + i+    +++++++ ++ w    +le  ++din++k++l ++ + ++  L  +++ ++++t+
   KKY18431.1  99 KNIAAS--RPQDDSSLLQKWysqFRLELKSDDINNLKNQLQTHQASLHTSLLMMEVYTTSLTS 159
                  999865..4456666667773334788877***************999999888886666665 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   1.6e-06    0.0026       2      28 ..     345     371 ..     344     372 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.6e-06
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 +++++l++iy++l d+  A+ y++kal
  KKY18431.1 345 DSCHLLALIYMDLDDLSTAETYCMKAL 371
                 79************************9 PP

>> SesA  N-terminal domain on NACHT_NTPase and P-loop NTPases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   5.9e-06    0.0096      11     117 ..      24     138 ..      19     143 .. 0.83
   2 ?   -3.4   0.1       6.5   1.1e+04      35      75 ..     167     207 ..     165     227 .. 0.67
   3 ?   -1.3   0.0       1.4   2.4e+03       7      43 ..     584     620 ..     579     627 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.9e-06
        SesA  11 aiklydaikd....ikglpeaFrevgkrLplvqetLed.aksqlesskldedtesa...ikpvlesckekatkleeifekvapapadsrl.eryrkavr 100
                 ++k+ +a+kd    i++l  +   vg++L  +++tL + + +++ +s  +  +++    ++ ++++c++ + +l++   + +p++++s l ++y +  r
  KKY18431.1  24 LYKFARAAKDidqnISDLSSEATGVGQSLSSLKKTLATpIVRNIHASGTSRRDQALwesVNGSVADCHKTLWRLQKNIAASRPQDDSSLLqKWYSQF-R 121
                 45666666666666**********************98688999999999988888999*******************************5555555.6 PP

        SesA 101 slgkgskVEtLmkgile 117
                    k + + +L +++++
  KKY18431.1 122 LELKSDDINNLKNQLQT 138
                 66788888888777765 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.5
        SesA  35 LplvqetLedaksqlesskldedtesaikpvlesckekatk 75 
                 Lp ++e  ++++s +++++   +  + + p++   +++a++
  KKY18431.1 167 LPRISELQDSINSLTRKQRMAASGSKDLAPSVSILENQAKR 207
                 55566666666666666666555555577777777777765 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.4
        SesA   7 iveaaiklydaikdikglpeaFrevgkrLplvqetLe 43 
                 i+ea +k+y++ k++k+    + +    L ++q  L+
  KKY18431.1 584 ILEANAKVYTKTKTDKRTALHIIALRGLLRIIQPLLD 620
                 789999*******999887777777777777776665 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2       4.9     8e+03       4      17 ..     307     320 ..     306     321 .. 0.89
   2 ?   11.9   0.1   9.2e-05      0.15       3      29 ..     346     372 ..     344     372 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.9
                 HHHHHHHHHHTT-H CS
       TPR_1   4 lynlGnayfklgky 17 
                 + n G ++++ ++y
  KKY18431.1 307 YLNEGEIHQRAKNY 320
                 78999****99999 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 9.2e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALe 29 
                 ++  l+++y+ l ++  A+ y+ kAL+
  KKY18431.1 346 SCHLLALIYMDLDDLSTAETYCMKALQ 372
                 66789********************97 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2      0.34   5.6e+02       4      20 ..     307     323 ..     305     326 .. 0.88
   2 ?    9.0   0.0     0.001       1.6       3      29 ..     346     372 ..     344     372 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.34
       TPR_2   4 lynlGlayyklgdyeeA 20 
                 + n G+++ ++++y+ A
  KKY18431.1 307 YLNEGEIHQRAKNYAVA 323
                 7799**********977 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.001
       TPR_2   3 alynlGlayyklgdyeeAleafekAle 29 
                  ++ l+l+y+ l+d+  A+ ++ kAl+
  KKY18431.1 346 SCHLLALIYMDLDDLSTAETYCMKALQ 372
                 6899*********************96 PP

>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.27   4.4e+02      22      95 ..      32     101 ..      21     114 .. 0.68
   2 ?    9.9   2.7   0.00047      0.77      40      93 ..     127     182 ..     117     186 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.27
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TT CS
        COG5  22 nnnddteldlstplkrlnydiqeldkrlrqlitsnhleLlehlskskslssvlselksslesLsasyerlkskv 95 
                 ++ d++ +dls+++  + + ++ l+k l + i++n         +s+  +++ +++++s+++  + + rl++++
  KKY18431.1  32 KDIDQNISDLSSEATGVGQSLSSLKKTLATPIVRNI----HASGTSRRDQALWESVNGSVADCHKTLWRLQKNI 101
                 455666667777777777777777777777777663....2233444444488888888888888888888777 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00047
                 XXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX- CS
        COG5  40 ydiqeldkrlrqlitsnhle.Llehlskskslss.vlselksslesLsasyerlks 93 
                  di++l+++l++   s h++ L+ ++ + + +s+ vl+el +++++L+ s++ l++
  KKY18431.1 127 DDINNLKNQLQTHQASLHTSlLMMEVYTTSLTSGlVLDELLPRISELQDSINSLTR 182
                 69********9988777665166899999999999*****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (955 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 6417.77
//
Query:       KKY18432.1  [L=107]
Description: putative mitochondrial 54s ribosomal protein 31 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-47  158.3   0.9    6.7e-47  158.1   0.9    1.0  1  L31             Mitochondrial ribosomal protein L31
  ------ inclusion threshold ------
      0.039   14.4   0.0      0.069   13.6   0.0    1.4  1  Mvb12           ESCRT-I subunit Mvb12
      0.062   13.0   0.0      0.071   12.8   0.0    1.1  1  Glyco_transf_5  Starch synthase catalytic domain


Domain annotation for each model (and alignments):
>> L31  Mitochondrial ribosomal protein L31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.1   0.9   1.1e-50   6.7e-47       3     102 .]       8     107 .]       6     107 .] 0.98

  Alignments for each domain:
  == domain 1  score: 158.1 bits;  conditional E-value: 1.1e-50
         L31   3 llgGllwKipwrlsktqkarqrkRlkavDevieavkeslkkkgvslkalekakaelpkesemspkdKYtvFskkskgYRKsihkvpkwtklslrenpkg 101
                 l+gGllwKipwrls++qkarqrkRl+avD+v++a++++lk+kg s ka+e++ +e+p+e+em pkdKYt+F++k+k+YRK+ihk+pkwt++s+r np g
  KKY18432.1   8 LSGGLLWKIPWRLSAPQKARQRKRLRAVDQVVDALSTALKNKGHSAKAIERWYQEMPREEEMLPKDKYTIFDRKEKKYRKGIHKLPKWTRVSQRVNPPG 106
                 79***********************************************************************************************99 PP

         L31 102 f 102
                 f
  KKY18432.1 107 F 107
                 8 PP

>> Mvb12  ESCRT-I subunit Mvb12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.1e-05     0.069      27      70 ..      20      63 ..      14      67 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
                ------HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH CS
       Mvb12 27 lkleelqptkemlepwykecdelvealekhdksgeeFdkWYkek 70
                l+ ++++ +++ l+++ +  d l+ al+++ +s +  ++WY+e+
  KKY18432.1 20 LSAPQKARQRKRLRAVDQVVDALSTALKNKGHSAKAIERWYQEM 63
                667888899999*****************************985 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.2e-05     0.071      20      51 ..      37      72 ..      35     103 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.2e-05
  Glyco_transf_5 20 dvvgaLpkaLaklghdvrvilPrygaikeek....k 51
                    +vv+aL+ aL+++gh  + i   y+++++e+    k
      KKY18432.1 37 QVVDALSTALKNKGHSAKAIERWYQEMPREEemlpK 72
                    59**********************999998743331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.30s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 731.41
//
Query:       KKY18433.1  [L=189]
Description: putative riboflavin kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.5e-26   90.4   0.0    1.1e-25   90.1   0.0    1.1  1  Flavokinase  Riboflavin kinase


Domain annotation for each model (and alignments):
>> Flavokinase  Riboflavin kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.0   6.3e-30   1.1e-25      21     111 .]      10     143 ..       4     143 .. 0.92

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 6.3e-30
                  TT--EEEEE-..S-B-G..TSEEEEEEEE...................................EEEEEEEETTTSSE...EEEEETT.--S--TTSE CS
  Flavokinase  21 lgfpTaNlel..ekllp..kkGVYavrvk...................................gvaniGvrptfknk...vEvhild.fsedlygke 75 
                  l +pTaN+++   +++p  ++GVY+++v                                    +v++iG++p+++nk   +E+hil  f++d+yg+ 
   KKY18433.1  10 LCIPTANIPPsgLSTYPdlSTGVYYGYVGlsvpssslanttsdatttstttrtsepnptthilpSVLSIGYNPFYNNKtrsIEIHILRpFDKDFYGAP 107
                  779******86523334568*******************************************************997789******659******** PP

                  EEEEEEEEEEE----SSHHHHHHHHHHHHHHHHHHH CS
  Flavokinase  76 lrvellkflRpekkFdsleaLkaqikkDvekarell 111
                  l++ +l+f+Rpe++++sleaL+++i++D+e+a+++l
   KKY18433.1 108 LNLLILGFIRPEYDYESLEALIEDIRTDCEVAERSL 143
                  ********************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1230.82
//
Query:       KKY18434.1  [L=684]
Description: putative transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00081   19.4   0.0     0.0019   18.2   0.0    1.6  1  PAS       PAS fold
     0.0064   16.6   9.6     0.0064   16.6   9.6    1.8  2  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.1e-07    0.0019       2      49 ..     475     522 ..     475     536 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.1e-07
                 HHHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGG CS
         PAS   2 dlraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldl 49 
                 +++ ++e + +p+++ ++ g+i  v ++++ l+G++ e +lgk  +  
  KKY18434.1 475 EYEGFIEGIGTPTIIARRTGEIAAVGKEFCILTGWKKEVLLGKEPNLN 522
                 58999**************************************87755 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   9.6   7.1e-07    0.0064       1      32 [.      59      91 ..      59      99 .. 0.87
   2 ?   -2.1   0.2      0.51   4.5e+03      26      34 ..     654     663 ..     652     667 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 7.1e-07
                SS-HHHHHCT---STSSSS-HHHHHCT..HHHCC CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkkln..leCtf 32
                +aC  C + +  C  ++P C++C+k++   +C++
  KKY18434.1 59 RACFACQRAHLTCGDERP-CQRCIKRGlqDQCQD 91
                59****************.********9899985 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.51
                 CT.HHHCCCC CS
     Zn_clus  26 ln.leCtfys 34 
                 ++ +eCt+ +
  KKY18434.1 654 NGkVECTYCW 663
                 5567888666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.51
# Mc/sec: 4016.83
//
Query:       KKY18435.1  [L=429]
Description: putative peroxin 26 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.052   13.9   0.1       0.15   12.4   0.1    1.8  2  DUF1844   Domain of unknown function (DUF1844)


Domain annotation for each model (and alignments):
>> DUF1844  Domain of unknown function (DUF1844)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         1   1.8e+04      18      30 ..     129     141 ..     126     149 .. 0.76
   2 ?   12.4   0.1   8.4e-06      0.15      32      68 ..     353     389 ..     340     392 .. 0.84

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1
     DUF1844  18 LGelpdpetgkke 30 
                 LG++ d+++ +++
  KKY18435.1 129 LGQASDQKSTQRR 141
                 8888888887765 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 8.4e-06
     DUF1844  32 dlelAkqsIdlLamLkeKtkgnLdeeEerlLeealye 68 
                  l++A++ + lL+ L++ t gnL+ + + lL+ +++ 
  KKY18435.1 353 ALPQARNMVRLLQNLAKNTIGNLTGNPAALLKMLIFI 389
                 6889***************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3103.22
//
Query:       KKY18436.1  [L=560]
Description: putative acetolactate synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-43  146.3   2.1    1.4e-42  145.3   2.1    1.6  1  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    2.8e-38  131.1   0.9    7.7e-37  126.4   0.0    2.2  2  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
    1.7e-23   82.9   0.0    3.2e-23   82.0   0.0    1.5  1  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
     0.0061   16.3   0.0      0.012   15.4   0.0    1.4  1  CO_dh         CO dehydrogenase beta subunit/acetyl-CoA syntha


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   2.1     3e-46   1.4e-42       2     166 ..       7     170 ..       6     175 .. 0.97

  Alignments for each domain:
  == domain 1  score: 145.3 bits;  conditional E-value: 3e-46
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   +va ++v+ L ++gv+++fg+pG  + +++d l+++++i++v +rhEq+aa++A ++ r+tg pgv+++tsgpGa n++t+l++A +++ P++++ g
    KKY18436.1   7 KVASIIVESLYNAGVRVAFGIPGAKVDAIFDTLDDHPEIHLVICRHEQNAAMMAAAVGRITGTPGVCIATSGPGAGNLTTGLVTATTEGDPVVAIIG 103
                   6899********************************************************************************************* PP

                   E--CCCHHS..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC- CS
  TPP_enzyme_N  99 drptslrgqgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlle 166
                   ++++++  + + q  +++l+++ p +k a+ v+  ++++e++  A+rta ++++g +++++p+dv   
    KKY18436.1 104 SVARHMSTKRTHQ-SMKALDILSPTAKTATSVDVEDQAAEVVLAAFRTASTSPKGSTVISIPMDVAAG 170
                   ********77777.***************************************************865 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.3     0.017        78      37     117 ..      58     140 ..      53     158 .. 0.68
   2 !  126.4   0.0   1.7e-40   7.7e-37       1     153 []     391     540 ..     391     540 .. 0.95

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.017
                   HHHHHHHS.TTSEEEEEEEHHHHHHT.GGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTCCTTTTSBB.BS----HHHHH CS
  TPP_enzyme_C  37 AiGaklak.pdrevvaivGDGgflmi.lqelatavrrnlpitvvvlnNegygmtggqqepfggkrksgpagkdlkpvdfakla 117
                    ++a++ +  + + v+i+  G  + +  + l+ta  ++ p++ ++   +  + t++ ++++ +    +p+ k+ ++vd++  a
    KKY18436.1  58 MMAAAVGRiTGTPGVCIATSGPGAGNlTTGLVTATTEGDPVVAIIGSVARHMSTKRTHQSMKALDILSPTAKTATSVDVEDQA 140
                   444444321234556666666666676899**************999999999988866666666666666666666666555 PP

  == domain 2  score: 126.4 bits;  conditional E-value: 1.7e-40
                   ESSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHH.HST..TSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHH CS
  TPP_enzyme_C   1 diGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGakl.akp..drevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqep 94 
                   d+G++ +w+ r++ +++pr++l s+g  t+G glp+Ai+a+l ++p  +++vv+i+GDGgf+++ qe++tav ++ +it++++n+e+y+m++ q+e+
    KKY18436.1 391 DVGTVYIWLMRFFFAYQPRKLLCSNGQQTLGIGLPWAIAASLtQEPpcSHKVVSISGDGGFMFSSQEMSTAVLQGCNITHFIWNDEAYNMVEFQEEM 487
                   89****************************************53555779*********************************************** PP

                   HTCCTTTTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C  95 fggkrksgpagkdlkpvdfaklaealGakgarvekadveeleealkealekkgpaliev 153
                   ++g r+sg +   l  vdf+k+ae++Gakg+r++++  +e+e+++ eal+ +g+al++v
    KKY18436.1 488 KYG-RSSGIK---LGGVDFVKFAESFGAKGFRISDS--SEVEKVMGEALAYQGVALVDV 540
                   **7.778877...99*****************9999..*******************98 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   7.1e-27   3.2e-23       2     134 ..     196     327 ..     195     330 .. 0.91

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 7.1e-27
                   HHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-.TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTT CS
  TPP_enzyme_M   2 ekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvip.edhplylgmlglhgskaanealeeaDlvlalGarfddirttgse 97 
                   e +a  +++ak pv+++G +++++++ +++++l+ k+ iPvv+t++++g++p e  +l++g++gl+ +++++++l+++Dl++ +G  +d    t+++
    KKY18436.1 196 ENVARSIEKAKLPVLFLGMRASSNKVVAAVHKLLSKFPIPVVETFQAAGAVPyELRHLFYGRVGLFHNQTGDRLLAKSDLIITVG--YDP---TEYD 287
                   78999***********************************************4455899**************************..555...4466 PP

                   T.TTTTT-..EEEEEESSCCCCTTCC--SEEEECTHHHHH CS
  TPP_enzyme_M  98 p.efapea..kiihididpaeigknyqvdlaivgdvketl 134
                     +++pe+  +i+h d  + + gk y+++++++g + e +
    KKY18436.1 288 AnQWNPEGslNIVHMDYTACDYGKYYHPSIELLGSIVENI 327
                   66999*98799***********************987665 PP

>> CO_dh  CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.6e-06     0.012      25      83 ..     195     252 ..     181     290 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.6e-06
                 SHHHHHHHHHSSSEEEEE-S--.-HH.HHHHHHHHHTSSSEEEEETHHHTT-G..GGSE CS
       CO_dh  25 lkvvakmikkakrPllivGpqvlkaeneeakekkilekklkvvatalkeaglkdyekkn 83 
                 l+ va+ i kak P+l++G  +  + +  a +k   ++ ++vv t  + ag  +ye  +
  KKY18436.1 195 LENVARSIEKAKLPVLFLGMRASSNKVVAAVHKLLSKFPIPVVETF-QAAGAVPYELRH 252
                 5789****************************************97.888887777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3798.02
//
Query:       KKY18437.1  [L=234]
Description: putative alpha-acetolactate decarboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      9e-78  260.6   0.2      1e-77  260.4   0.2    1.0  1  AAL_decarboxy  Alpha-acetolactate decarboxylase


Domain annotation for each model (and alignments):
>> AAL_decarboxy  Alpha-acetolactate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.4   0.2   5.7e-82     1e-77       1     217 [.       6     222 ..       6     224 .. 0.98

  Alignments for each domain:
  == domain 1  score: 260.4 bits;  conditional E-value: 5.7e-82
  AAL_decarboxy   1 lyqvstlsaLmegvyegtltvsellkhGdfGlGTfeeldGEliildgkvYqlksdgsvrevddeektPFavvtkfepektvklk.ealskeeleea 95 
                    lyq+s+l+aLm+gv e+++tv++ lk+G+ GlGTf +++GEl+ ldg+vYql ++g+vr++++e+++PF ++t+f p++t++++ e  +k++++++
     KKY18437.1   6 LYQYSLLNALMDGVSESGVTVQKFLKKGNQGLGTFVRMNGELLSLDGTVYQLMAEGKVRKANPEDQIPFGICTHFAPQATKSVSlE--DKTAIDRE 99 
                    7*********************************************************************************9944..9******* PP

  AAL_decarboxy  96 leellpsk.NlfyairidGtfksvkvRsvpkqekpyeplaevakkqsefefenveGtlvGfrtPeylqginvaGlHlHFisddrkfGGHvldfele 190
                    l+e  +++ Nlf+++ri+G+f+s+k+R+v++qe++++pl+e+ kkq + +f+++eGt+vGfr+P+ +qg++vaG HlHFi+d r++GGHvl++++e
     KKY18437.1 100 LDEFNSHSvNLFMTYRITGRFRSIKARTVRGQEYKGQPLSELGKKQYVNTFNDIEGTIVGFRSPKSWQGFSVAGEHLHFIDDSRQVGGHVLEVSAE 195
                    ****98888*************************************************************************************** PP

  AAL_decarboxy 191 eveveiakisklelelpedeeFeeadl 217
                    ev++++a++s++++elp++e+F++a+l
     KKY18437.1 196 EVTMSMAVASNIHVELPTSEDFNAAKL 222
                    ************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.52
# Mc/sec: 1361.28
//
Query:       KKY18438.1  [L=566]
Description: putative major facilitator superfamily domain general substrate transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 3539.74
//
Query:       KKY18439.1  [L=298]
Description: putative export control protein chs7 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   5.5e-113  377.1   7.3   6.2e-113  376.9   7.3    1.0  1  Chs7          Chitin synthase export chaperone
  ------ inclusion threshold ------
        9.9    6.3  17.1      0.036   14.2   2.5    3.0  3  MpPF26        M penetrans paralogue family 26


Domain annotation for each model (and alignments):
>> Chs7  Chitin synthase export chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  376.9   7.3    7e-117  6.2e-113       1     286 [.       5     292 ..       5     293 .. 0.98

  Alignments for each domain:
  == domain 1  score: 376.9 bits;  conditional E-value: 7e-117
        Chs7   1 qfgdFdsiCrktalplCnllksskseteakegiepeCyargiel.antiifnlgsilihivalivtlililrvrskktAvGRkEillflllyllleile 98 
                 qfg+Fd++Cr+++lp+Cnl+ +s++  +a  g    C ++gi+l +n++++nlgsil+++va++vt++l+l++++k++AvGR+E+++fl++y++l+i+e
  KKY18439.1   5 QFGNFDKFCRDSTLPVCNLFVHSNQPPNADYG---GCALTGIHLsHNRYLGNLGSILLCAVAVLVTIFLLLKSERKAAAVGRREMQIFLIGYIILSICE 100
                 7*********************9777766655...6********9****************************************************** PP

        Chs7  99 lvvdggviplsskvypyfvavqiglisatlwiLllnglvgfqlleDGtplSllllrlsslvlfivtflialdtfkswtaelsst.....ktiaLfvlly 192
                 ++++g + pl+ +v++ f+av+i+ i+at+w+Llln++vgfqll+DGtp+S++l+ +s+l+lf++t++ialdt++swt++++ +     ++i+L+vl++
  KKY18439.1 101 IFTVGAF-PLDPSVRKGFTAVHIATITATTWVLLLNAVVGFQLLDDGTPVSIALILGSALALFVGTGYIALDTAFSWTGHFDGSrggsnRNIGLYVLYL 198
                 *******.**************************************************************************9999999********** PP

        Chs7 193 llnlvllvvyvvlqlilvlrvLeerwplgalllgvllfvigqvllyvlskkiCegvkhyidGlffetlcnllavmmvykfWdsiTeddlefsvg 286
                 l++l++l++++vl+++lv+rvL+e++p+++l++++llf+igq++ +v+s++iC+gv+++i+G++fetl++ll+v+m+++fW+siTedd++++v+
  KKY18439.1 199 LIPLIFLFLFFVLETVLVIRVLGEKKPMLYLAAATLLFAIGQIFDFVISTHICQGVNGKINGAMFETLFTLLSVVMIWVFWSSITEDDWPMPVA 292
                 *******************************************************************************************995 PP

>> MpPF26  M penetrans paralogue family 26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   2.7     0.089   7.9e+02      75     118 ..      63     101 ..      50     105 .. 0.55
   2 ?   14.2   2.5     4e-06     0.036      23     112 ..     158     242 ..     147     259 .. 0.69
   3 ?   -0.9   0.4      0.18   1.6e+03      18      70 ..     227     277 ..     225     283 .. 0.49

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.089
      MpPF26  75 nfileiiLiiKvselkkkhpefkkvklhtvLliigifilpifsi 118
                  ++++i+L +K      k   +      +   +ig +il+i+ i
  KKY18439.1  63 AVLVTIFLLLKSE---RKAAAVGR--REMQIFLIGYIILSICEI 101
                 3444555555544...33333333..134456677777788877 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 4e-06
      MpPF26  23 tvlllvsllayivllskskllskeyeeesslleaelligvllillidifyivnfileiiLiiKvselkkkhpefkkvklhtvLliigifi 112
                 +++l+v+  + +++l ++ +   ++      ++ ++++ vl +l+  if++  f+le++L+i+v   kk           t L  ig ++
  KKY18439.1 158 ALALFVG--TGYIALDTAFSWTGHFDGSRGGSNRNIGLYVLYLLIPLIFLFLFFVLETVLVIRVLGEKKPMLYLAA---ATLLFAIGQIF 242
                 3344433..33344444555556777788889999*****************************976665555555...55555555555 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.18
      MpPF26  18 lyllatvlllvsllayivllskskllskeyeeesslleaelligvllillidi 70 
                 lyl a+ ll++   ++ +++s+      + +++  ++e+  l ++l +++i +
  KKY18439.1 227 LYLAAATLLFAIGQIFDFVISTHICQGVNGKINGAMFET--LFTLLSVVMIWV 277
                 566666666666555555555544444333333333333..444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 1836.56
//
Query:       KKY18440.1  [L=1460]
Description: hypothetical protein UCRPC4_g04909 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0038   16.2   0.0      0.036   13.0   0.0    2.3  2  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
  ------ inclusion threshold ------
       0.46   10.3   4.6       0.19   11.5   0.5    2.4  2  TRAF_BIRC3_bd  TNF receptor-associated factor BIRC3 binding d
          3    7.6   9.5       0.64    9.8   3.5    2.4  2  DUF445         Protein of unknown function (DUF445)


Domain annotation for each model (and alignments):
>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.24   1.4e+03      30      74 ..     474     515 ..     455     530 .. 0.72
   2 !   13.0   0.0   6.1e-06     0.036     157     290 ..     603     756 ..     576     765 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.24
    Ge1_WD40  30 egkylayaikvkntgeglvrvvnk.eteeraLlkglkgevldlafa 74 
                 ++ky+ ya+  k+  +g+ rv+ + + ++r + k+ ++++ ++a+ 
  KKY18440.1 474 TSKYITYALV-KS--GGM-RVIRQdDGSDRQIFKNSHDRIFNVAMC 515
                 4689999984.44..455.555541678899999988888887765 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 6.1e-06
    Ge1_WD40 157 iwsvdmiaskygs....gelsveeiee.gllkieehsliveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGk.............s 237
                 +w   +++skyg      +++ve+ ++  +lki+      + +fs d t++    + G ++f+ + +  +e++    + +P d +             +
  KKY18440.1 603 VWPTLAMSSKYGVqganRKVDVEKFYKeRTLKITTGKAGKDFSFSEDDTTIVSLDKAGRLRFWDIRQLIDESNATAPKLHPIDIRlplltlstvsaseK 701
                 677777788887643334666666554488999999999999**********************98875544444444444443322221111100003 PP

    Ge1_WD40 238 l..ssllfldnhkeesdeqfWrfaitgadnnselklWscelWtClqtikfapsie 290
                 +  +s lf+d+++  ++++  r+++ g  +n+ l+lW  +l + +  i+f  + e
  KKY18440.1 702 IwpTSALFIDKLRPYTKATALRYVLVGLRQNHTLQLWDISLGKAVEEINFPHDTE 756
                 3335789**************************************9999987755 PP

>> TRAF_BIRC3_bd  TNF receptor-associated factor BIRC3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3      0.33     2e+03      27      57 ..    1094    1124 ..    1082    1130 .. 0.75
   2 ?   11.5   0.5   3.2e-05      0.19      23      62 ..    1226    1266 ..    1221    1267 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.33
  TRAF_BIRC3_bd   27 verssttieaverqrrldqekieaLekKvrq 57  
                      er     +a  rq++  + + e+L+  v++
     KKY18440.1 1094 MERKVQDTAASTRQEAMLRLISETLSDNVEK 1124
                     3788888999999999999999999988863 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 3.2e-05
  TRAF_BIRC3_bd   23 LnrEver.ssttieaverqrrldqekieaLekKvrqLerti 62  
                     ++ Ever +s +i+++e  rr d++ki+ +   v+++ +t+
     KKY18440.1 1226 MSAEVERrVSQQIQNYEAERRVDRQKIDDVMDTVNNMAKTL 1266
                     677999648999****************9999999988886 PP

>> DUF445  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.4     0.076   4.6e+02     234     292 ..     316     375 ..     273     414 .. 0.58
   2 ?    9.8   3.5   0.00011      0.64      63     249 ..    1098    1277 ..    1062    1333 .. 0.50

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.076
      DUF445 234 lkkkklsdlevqeyeealwealkdlllkdlneeesllrerisklleklgeklaed.pklr 292
                  k + l+d+++q+ e+al +al   ++++  +e++ ++  + kl+e+ +e+  e  ++l+
  KKY18440.1 316 EKLEALADEASQAAEDALADALYVPIKEESFDEKVDIDALADKLEETAIEAAVEMkNELD 375
                 344455556666666666666666666555554444444444444444443333323333 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00011
      DUF445   63 Lkeaevasklaewlknptnkeslaaiveellkeiledlddesikellkknlkkkleevipepllgkllellleeerhkkllddlldriknllkdeev 159 
                  ++++  +++  ++l+    +e+l+++ve+ l++i+ + +++++   l ++  + +e+v  + l g +  + l ++   +++  +++    ++ +e v
  KKY18440.1 1098 VQDTAASTRQEAMLR--LISETLSDNVEKSLARIVISNFQQAVIPALTNATAQSVESVLVRHLHGII-PNELGKHLPTAISAGMSNPRTLMVLTESV 1191
                  222222222222222..12222233333333333333333333333333333444444444444433.22222222333333333333445555555 PP

      DUF445  160 kekikelidelieeesgklvlesivsmflreltsilekvksdpdhllreeedkkvreliadllndpelaakveklkkkklsdlevqeyee 249 
                  ++ki++ +++ + e + ++v +s+ +  ++ + ++  +v++ + +++++ e +    ++++ + d ++++ v+++ k + +  ++q+  +
  KKY18440.1 1192 SQKIAHSVENAFTELMHTTVTPSFKNLAVNTAGTMSAEVERRVSQQIQNYEAER---RVDRQKID-DVMDTVNNMAKTLADMARSQIEFQ 1277
                  555555555555555555555555555555555555555555555554444444...55555553.555566665555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1486  (0.0828825); expected 358.6 (0.02)
Passed bias filter:                      629  (0.0350828); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.02u 0.28s 00:00:01.30 Elapsed: 00:00:00.44
# Mc/sec: 9896.57
//
Query:       KKY18441.1  [L=385]
Description: putative phosphotransferase enzyme family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-64  217.1   0.0    1.4e-63  214.9   0.0    1.8  1  Fructosamin_kin  Fructosamine kinase
    0.00011   22.3   0.0    0.00021   21.3   0.0    1.4  1  APH              Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.22   10.8   0.0       0.33   10.2   0.0    1.2  1  EcKinase         Ecdysteroid kinase


Domain annotation for each model (and alignments):
>> Fructosamin_kin  Fructosamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.9   0.0   2.3e-67   1.4e-63      34     285 ..      46     380 ..      22     383 .. 0.91

  Alignments for each domain:
  == domain 1  score: 214.9 bits;  conditional E-value: 2.3e-67
  Fructosamin_kin  34 yllseeeqrfFvklne.kealemFeaEaesLealaetqtirvPkvlavGelkdas..fLvleyLelk..l......ekkesaaelgqqLaklHr 116
                       + s+  q+fF+k+ +   a+ mF++E +sL+a+++  +   P+++ +G+l++++  fLv+++L+++         ++++s ++l+++LaklH+
       KKY18441.1  46 SSTSSRPQKFFMKTTSaPGAEVMFRGEHASLNAISDVVPSLAPRAYGFGKLENSAgyFLVTDFLDMSggFgrrkstSTAGSGMSLAEKLAKLHS 139
                      44557889*****988578899*****************************999888********8643211111134457789********** PP

  Fructosamin_kin 117 .......aseqkefGfdvdntigktpqpNewqssWaeFfaeqRlgvqlelakekglefakieelvervaell...........skhqpkpsllH 192
                               +++ fGf+v + +g+tpq Ne+ ++Wa+F+ e+Rl  +l+  +++++++++++++ve++ + +            k  ++p+++H
       KKY18441.1 140 tpapipeGYNSPMFGFPVTTCCGDTPQDNEFLDDWAKFYGEKRLMGILKRGEQQNGKDSELRKMVETLVQDVvprllrkghlgGKGYINPVVIH 233
                      999998888999******************************************************99888889******9998899******* PP

  Fructosamin_kin 193 GdLWsgNaaltkdge...................................................pvifdPaayygdrEvdlamtelfggfps 235
                      GdLWsgN  + ++++                                                   ++ifdP++ yg++E++l+++++fggf+s
       KKY18441.1 234 GDLWSGNKGIATIDSpaahsrsrtlsqqqsrtsthrhshlddephlptitetppqhslsedeptleEIIFDPSSVYGHSEYELGIMSMFGGFSS 327
                      ************99999***************************************************************************** PP

  Fructosamin_kin 236 efyegYqsivpld...egyeeRkelYqLYhlLnhlnlFgggylsqaqkliqkl 285
                      +f + Y++ivp++   ++y++R +lY+LYh+Lnh+++Fgggy   a+ + ++l
       KKY18441.1 328 SFMKDYHRIVPKTepvDEYDDRIQLYELYHHLNHYAIFGGGYKGGAMGIGKRL 380
                      *************8888*************************99998776666 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   3.6e-08   0.00021      11     177 ..      38     240 ..      30     241 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.6e-08
                 CEEEEEEETT.-.....-EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS.HHHHHHHHHHHHHHHHH CS
         APH  11 nrtylvttpa.g.....ryvlrrnpparaaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr.klsaaqlpellealgef 101
                 + ty +ttp+ +     +++++  +++ a+  +r+e+a+l ++++  +  +P+++ +++ ++ +g+ f++  +++       + s   +   +  l+e 
  KKY18441.1  38 S-TYSITTPSsTssrpqKFFMKTTSAPGAEVMFRGEHASLNAISDVVPsLAPRAYGFGKLENSAGY-FLVTDFLDMSGGFGrRKST-STAGSGMSLAEK 133
                 4.88888888657888899999988888******************5588***************7.6666666666666643333.45555669**** PP

                 HCCHHCH.-S.....TTTB-...................SHHCHTCCHH.....HHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--S.......SS CS
         APH 102 laalhqvdpa.....alpla...................dflaqdlell.....rqlesatarllaselldlleeleeqvlaalaallpg.......el 164
                 la+lh+++++     ++p++                   d+++++   +     ++   +++++++sel++ +e l   v + +++ll++         
  KKY18441.1 134 LAKLHSTPAPipegyNSPMFgfpvttccgdtpqdnefldDWAKFYG--EkrlmgILKRGEQQNGKDSELRKMVETL---VQDVVPRLLRKghlggkgYI 227
                 *******433344442222255555555444444444444443332..2223322222222356666666644444...55666666666777**99** PP

                 -EEEE-SS-SGGG CS
         APH 165 ptvllHgDlhpgN 177
                  +v++HgDl +gN
  KKY18441.1 228 NPVVIHGDLWSGN 240
                 ***********99 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   5.5e-05      0.33     118     226 ..     128     240 ..      75     241 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 5.5e-05
    EcKinase 118 klvlkkLAkfHAaSlalke..ekpevfkelkkglleedyvssalkeafeelleellkaalealreelpelekeaekleklkenlferllelve..ekee 212
                     +kLAk+H +++ + e  ++p +   ++  + + +  ++ l+++ + + e+ l  +l+  ++++ + ++ ++ +e l ++++ rll+  +   k  
  KKY18441.1 128 MSLAEKLAKLHSTPAPIPEgyNSPMFGFPVTTCCGDTPQDNEFLDDWAKFYGEKRLMGILKRGEQQNGKDSELRKMVETLVQDVVPRLLRKGHlgGKGY 226
                 56789***********99974444444445544555556666667777777788888888888777777777779999999999999999999755556 PP

    EcKinase 213 efnvlnHGDlwvnN 226
                    v+ HGDlw+ N
  KKY18441.1 227 INPVVIHGDLWSGN 240
                 667********988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.35s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 2376.74
//
Query:       KKY18442.1  [L=335]
Description: putative tam domain methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-18   66.2   0.0      4e-18   65.8   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    1.2e-13   51.5   0.0    2.6e-13   50.5   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    1.6e-11   44.7   0.0    2.8e-11   43.9   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    6.5e-11   42.9   0.0    2.1e-10   41.2   0.0    1.8  1  Methyltransf_12  Methyltransferase domain
    1.2e-10   41.4   0.0      1e-09   38.4   0.0    2.1  1  Methyltransf_31  Methyltransferase domain
    7.2e-06   25.5   0.0    6.2e-05   22.4   0.0    2.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    0.00019   21.6   0.0    0.00056   20.1   0.0    1.8  2  FtsJ             FtsJ-like methyltransferase
    0.00034   20.0   0.0    0.00063   19.1   0.0    1.4  1  Methyltransf_2   O-methyltransferase domain
     0.0023   17.4   0.0       0.12   11.8   0.0    2.3  2  Methyltransf_4   Putative methyltransferase
  ------ inclusion threshold ------
      0.012   15.2   0.0      0.026   14.1   0.0    1.5  1  MTS              Methyltransferase small domain
      0.073   12.8   0.0       0.16   11.7   0.0    1.5  1  Methyltransf_16  Lysine methyltransferase
      0.087   12.8   0.0         13    5.8   0.0    2.3  2  ADH_zinc_N       Zinc-binding dehydrogenase
       0.14   12.0   0.0       0.22   11.3   0.0    1.3  1  Methyltransf_8   Hypothetical methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.0   2.9e-21     4e-18       3     124 ..      82     204 ..      80     254 .. 0.82

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 2.9e-21
  Methyltransf_23   3 aqreeelsdklerllpklraggrvLdiGcGtGillevlren..gfsvtgvDlspeaveiaekakkaqkdqfdeq.eaaepqgkfdlIvlrevle 93 
                       ++ + + d ++ +++ ++++ + Ld+G+GtG ++ +++e+  g+ v +vDlsp++ +    +++ +++  d + ++++++++fd+I+ r++  
       KKY18442.1  82 DHMTRLMLDGRLTFAELEKEPLNALDLGTGTGKWAMEFAEEnaGCRVLAVDLSPVQPNFT--PPNLEFQVDDIEaDWTYKEDSFDYIHIRYMAV 173
                      578899999***999999********************7765799**********99995..67777766665549999*************** PP

  Methyltransf_23  94 hvpdppellrqiatllkpgGylllseplasl 124
                       v+d+  ll + ++ l+pgG +++ + + + 
       KKY18442.1 174 AVRDWQQLLERCYSTLRPGGTIEIIDMDLNY 204
                      ************************9965443 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   1.9e-16   2.6e-13       2      97 .]     106     193 ..     105     193 .. 0.89

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 1.9e-16
                      EEET-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG.BSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrl.gkakvtgvDiseemleaareraeeeglnvefvqgdaed.lpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      LdlG+GtG++++++a++  g ++v++vD+s+ + + +         n+ef++ d+e+ + ++++sfD+++++++   +  +d++++l+++++ L
       KKY18442.1 106 LDLGTGTGKWAMEFAEENaG-CRVLAVDLSPVQPNFTPP-------NLEFQVDDIEAdWTYKEDSFDYIHIRYM--AVAVRDWQQLLERCYSTL 189
                      9****************855.**********99887644.......669******65599***********855..566789************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      +pgG
       KKY18442.1 190 RPGG 193
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0     2e-14   2.8e-11       1      94 [.     106     195 ..     106     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 2e-14
                      EEET-TTSHHHHHHH..HTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaeala..krgarvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      Ld+G+GtG+ a ++a  ++g+rv++vDls+ +      +  +++  +ef+v d+e +  ++++sfD + ++ +   v d++++l+ ++  L+pg
       KKY18442.1 106 LDLGTGTGKWAMEFAeeNAGCRVLAVDLSPVQP-----NFTPPN--LEFQVDDIEaDWTYKEDSFDYIHIRYMAVAVRDWQQLLERCYSTLRPG 192
                      8**************75555**********998.....444554..99*******5579*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       KKY18442.1 193 GTI 195
                      *97 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   1.5e-13   2.1e-10       1      99 []     106     195 ..     106     195 .. 0.80

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 1.5e-13
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+GtG  +++++e++ ++++++vD+sp +        ++  +n   +v+  + d   + +++sfD++++     +++d++++l+++++ L+
       KKY18442.1 106 LDLGTGTGKWAMEFAEENAGCRVLAVDLSPVQP-------NFTPPNLEFQVDDIEAD--WTYKEDSFDYIHIRYMAVAVRDWQQLLERCYSTLR 190
                      8********************************.......44443222222222222..222236***************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG +
       KKY18442.1 191 PGGTI 195
                      ***75 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   7.2e-13     1e-09       3     114 ..     101     202 ..      99     252 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 7.2e-13
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkile 95 
                      + l+ lDlG+GtG+ + e+a e + +++v  +D s+   ++           n+eF++ die+     +++++fD+i+ +    a+ d ++ le
       KKY18442.1 101 EPLNALDLGTGTGKWAMEFA-EENAGCRVLAVDLSPVQPNFTPP--------NLEFQVDDIEAdWT--YKEDSFDYIHIRYMAVAVRDWQQLLE 183
                      56899***************.8899***********86554444........9**********888..999*********************** PP

  Methyltransf_31  96 eiervlkpggilliedprl 114
                      +  + l+pgg + i d++l
       KKY18442.1 184 RCYSTLRPGGTIEIIDMDL 202
                      ************9999993 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   4.5e-08   6.2e-05      45     154 ..      99     200 ..      86     205 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 4.5e-08
                      S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHH CS
  Ubie_methyltran  45 vkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLke 138
                      +k++ ++lD+ +Gtg +a++++++ ++  +v  +D+++   + +   l+     +++ + a   +  +++dsfD++ + +    v D ++ L+ 
       KKY18442.1  99 EKEPLNALDLGTGTGKWAMEFAEE-NAGCRVLAVDLSPVQPNFTPPNLE----FQVDDIEA---DWTYKEDSFDYIHIRYMAVAVRDWQQLLER 184
                      68999****************986.4567999****9976666555443....33444443...467999************************ PP

                      HHHHEEEEEEEEEEEE CS
  Ubie_methyltran 139 ayrvlkpGGrlvvlef 154
                       y  l+pGG++ ++++
       KKY18442.1 185 CYSTLRPGGTIEIIDM 200
                      **********999875 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   4.1e-07   0.00056      23      72 ..     103     154 ..      71     200 .. 0.83
   2 ?   -2.1   0.0       2.6   3.6e+03      29      52 ..     288     312 ..     281     317 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4.1e-07
                 -EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCC CS
        FtsJ  23 ktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditd 72 
                  +++Dlg ++G w+   +++ +a+++v+avDl p++p    p++++   di  
  KKY18442.1 103 LNALDLGTGTGKWAMEFAEE-NAGCRVLAVDLSPVQPNftpPNLEFQVDDIEA 154
                 569**********9999999.578***********888777888887666654 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.6
                 T-TTSHHHHHHCCT.T..-SEEEEE CS
        FtsJ  29 gaaPGgwsqvllqrlga.kgkvvav 52 
                 g a G+++++l + +++ ++++v+v
  KKY18442.1 288 GIAMGAFIKILGWTTNQvEAMLVGV 312
                 7799*******99987767888887 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.6e-07   0.00063      50     174 ..      88     207 ..      69     227 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.6e-07
                     HHHHHHHSS-GGG-S.EEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS-----TTEEEEES-TT..TS-----SEEEEESSGGGS- CS
  Methyltransf_2  50 vakkvleafdleglk.slvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehlsageeervefvgGdff..kdslPeaDaillkrvlhDws 141
                     + +  l+  +le+ + + +D+G GtG  a + ++   +++v+  Dl+ V    +++  +++e +v+ ++ d    +ds     +  ++  + Dw+
      KKY18442.1  88 MLDGRLTFAELEKEPlNALDLGTGTGKWAMEFAEENAGCRVLAVDLSPVQ---PNFTPPNLEFQVDDIEADWTykEDSFDYIHIRYMAVAVRDWQ 179
                     4455555555543321357***************************9995...445456788889999888651145566666667778888885 PP

                     HHHHHHHHHHHHHH--TT-EEEEEE----TTS- CS
  Methyltransf_2 142 dekcvklLkrvkkalpagGkvivveavlgadps 174
                          +lL+r++++l++gG + ++++ l+   +
      KKY18442.1 180 -----QLLERCYSTLRPGGTIEIIDMDLNYTSD 207
                     .....8*******************98876655 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   8.6e-05      0.12       5      33 ..     105     133 ..     101     137 .. 0.92
   2 ?    3.2   0.0     0.038        52      98     145 ..     180     227 ..     178     254 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.6e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                      l++G+G G++ ++ A++n+ + +l++++
      KKY18442.1 105 ALDLGTGTGKWAMEFAEENAGCRVLAVDL 133
                     58*************************97 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.038
                     HHHHHHHHHEEEEEEEEEEESHHHHHHHHHHHHHCSTTEEESSCCCSC CS
  Methyltransf_4  98 ellkelarvLkkgGvlelaTDveeyaeemlkvleeeplferlskeeel 145
                     +ll+   ++L++gG +e++  + +y+ +  +vl e+ l++++++ ++ 
      KKY18442.1 180 QLLERCYSTLRPGGTIEIIDMDLNYTSDDGTVLPENRLLVFMNQLTSA 227
                     68999999**********98899****999999999998888776655 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.9e-05     0.026      26     138 ..      97     198 ..      78     207 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.9e-05
                 HCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEEEE---STTTCHCHHHHHHHHHHH CS
         MTS  26 tlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeveekkfdlivsNPPfhagkatelavaeeliae 124
                  l+ke   ++lDlG+G+G  ++++a+e+   +v +vd +       + n++  +le +v   ++  + +e++fd+i       +  a+  + +++l++ 
  KKY18442.1  97 ELEKE-PLNALDLGTGTGKWAMEFAEENAGCRVLAVDLSP-----VQPNFTPPNLEFQVDDIEADWTYKEDSFDYIHI-----RYMAVAVRDWQQLLER 184
                 45553.3369*********************999999775.....566777777776666666666777888888843.....3445666777888888 PP

                 HHHHEEEEEEEEEE CS
         MTS 125 AkeaLkegGeLliV 138
                   + L++gG++ i+
  KKY18442.1 185 CYSTLRPGGTIEII 198
                 88888888877665 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00012      0.16      42      86 ..      97     141 ..      77     168 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
  Methyltransf_16  42 anelsklsvlELGsGtGlvGlavaellpeakviltDleellellk 86 
                      + e ++l++l+LG GtG   + +ae   +++v+  Dl+ ++++ +
       KKY18442.1  97 ELEKEPLNALDLGTGTGKWAMEFAEENAGCRVLAVDLSPVQPNFT 141
                      5578899*******************************9987654 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0091        13       1      24 [.     111     135 ..     111     139 .. 0.93
   2 ?    4.6   0.0     0.021        29      70     115 ..     180     232 ..     172     247 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0091
                 HHHHHHHHHHH.HTT-EEEEEESSH CS
  ADH_zinc_N   1 gvGlaavqlAk.alGaeviavdsse 24 
                 g G +a+++A   +G++v avd s+
  KKY18442.1 111 GTGKWAMEFAEeNAGCRVLAVDLSP 135
                 789********9**********987 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.021
                 HHHHHHHHCEEEEEEEEECSC..TSSEEE...EEHHH..HHHTT-EEEEE-SS CS
  ADH_zinc_N  70 atleaalkllkpgGrlvvvGg..gkgeee...fdlrn..lllkeksilGsllg 115
                 + le++++ l+pgG++ ++ +   +  ++   ++ ++  +++++++   +++g
  KKY18442.1 180 QLLERCYSTLRPGGTIEIIDMdlNYTSDDgtvLPENRllVFMNQLTSASTIRG 232
                 67999**************9987333333555555554344666655444444 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00016      0.22      75     160 ..     104     201 ..      92     222 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00016
                     -EEEES-TT-HHHHH--S-.....EEEEESS-SSTTEEES.......-T.TS-S--TT-EE.EEEEES---SS-HHHHHHHHHHHEEEEEEEEEE CS
  Methyltransf_8  75 vvadlGcGeakiaeavreke...kvrsfdlvavnervvac.......dl.akvPledesvd.vavfclslmgtnladflkeanrvlkvGGllkva 157
                        dlG G  k a++  e++   +v ++dl +v+++ ++        d+ a    +++s d + +  +++ + ++++ l+  +  l++GG + + 
      KKY18442.1 104 NALDLGTGTGKWAMEFAEENagcRVLAVDLSPVQPNFTPPnlefqvdDIeADWTYKEDSFDyIHIRYMAVAVRDWQQLLERCYSTLRPGGTIEII 198
                     5679********96555543223899*****999988766111111144444455566777588999*************************998 PP

                     EEG CS
  Methyltransf_8 158 evk 160
                     ++ 
      KKY18442.1 199 DMD 201
                     876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:00.57
# Mc/sec: 1780.11
//
Query:       KKY18443.1  [L=379]
Description: putative galactoside o-acetyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-16   58.2   0.1    1.5e-15   57.2   0.1    1.6  1  Mac       Maltose acetyltransferase
    4.6e-05   23.6   0.0    9.6e-05   22.6   0.0    1.5  1  BTB       BTB/POZ domain
  ------ inclusion threshold ------
      0.017   15.6   0.0      0.094   13.2   0.1    2.2  3  DsrC      DsrC like protein


Domain annotation for each model (and alignments):
>> Mac  Maltose acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.1   2.5e-19   1.5e-15       1      53 []     291     351 ..     291     351 .. 0.83

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 2.5e-19
                 HHHTTS-BETTTSHHHHHHHHHHHHHHHHHHT.S........TTT-HHHHHHHHHHHSSBES CS
         Mac   1 KMlaGelYdafsDpeLvaeRlrarelcrryNq.t........rpsdkdeRrelLrellGsvG 53 
                 +M++G+lY++  D++L++ R+rar++c+ yN+ +         + + +eR e L+e+lG+vG
  KKY18443.1 291 RMISGMLYNC-TDKKLEEGRFRARKWCHLYNTqFpvdnpdatLEGLAAERYERLKEILGKVG 351
                 8*********.79******************845444333333337777***********98 PP

>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.6e-08   9.6e-05       2     105 ..      22     128 ..      21     133 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.6e-08
                 HHHHHHTTTS-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTST..TTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC-....CGGGHHHHHHHHHHH CS
         BTB   2 nelresgelcDvtlvvgdgkefkahkavLaarSpyFkalftsk..eieessvseielddvepeafealLefiYtgeleit....seenleelLaaadll 94 
                 nel+ s   +D+ +  + +++ + h   L+ +S+++ + f ++  + + ++ +   l++ e  +fe+l++++Y+ +l+ +    + + l +l  + ++l
  KKY18443.1  22 NELLTS-RIVDIYVGPE-NTHWPLHEKLLCHYSSVLADKFYNEdtPARGNN-KSFGLPEEEDCTFEMLVSWLYSRRLDPPaeekEIGPLLDLYLLSEKL 117
                 666665.6889999999.699**********************87434444.35999***********************9666666677777888999 PP

                 T-HHHHHHHHH CS
         BTB  95 qiprlkkacee 105
                 ++++l + + e
  KKY18443.1 118 EMEKLSNDIVE 128
                 99999887666 PP

>> DsrC  DsrC like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         3   1.8e+04      89     106 ..      64      81 ..      59      81 .. 0.81
   2 ?   13.2   0.1   1.6e-05     0.094      32      70 ..     114     152 ..     107     169 .. 0.81
   3 ?   -1.9   0.0      0.81   4.8e+03      42      63 ..     193     214 ..     187     225 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3
        DsrC  89 gpakqackiAGlpkPtgC 106
                  pa++ +k  Glp+ + C
  KKY18443.1  64 TPARGNNKSFGLPEEEDC 81 
                 689999999999987777 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.6e-05
        DsrC  32 eegieLteehwevikflreyyeeygvapairklvkalkk 70 
                 +e++e+++   ++++++r++y+e++  p +r++    ++
  KKY18443.1 114 SEKLEMEKLSNDIVEVVRQFYHEENAYPGLRRVQYIYSN 152
                 588999*************************98766555 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.81
        DsrC  42 wevikflreyyeeygvapairk 63 
                  ++i++++e + e + +p +r+
  KKY18443.1 193 VDIIRAIQEWHLEGKSVPDARD 214
                 68999****9999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 2347.78
//
Query:       KKY18444.1  [L=463]
Description: putative c6 zinc finger domain containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.001   17.7   0.0     0.0016   17.1   0.0    1.2  1  Cep3      Centromere DNA-binding protein complex CBF3 subunit
  ------ inclusion threshold ------
       0.12   12.8   0.0       0.23   11.8   0.0    1.4  1  TruB_N    TruB family pseudouridylate synthase (N terminal do
       0.14   12.6   0.1       0.38   11.1   0.1    1.7  1  DUF1651   Protein of unknown function (DUF1651)


Domain annotation for each model (and alignments):
>> Cep3  Centromere DNA-binding protein complex CBF3 subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.6e-07    0.0016     112     208 ..      25     131 ..      17     146 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.6e-07
                 HHHHHHHHHHHHHHHHTTTTTS--HHHHHHHHHHTTTTHHHHSHHHHHHHHHHHHHHHHTT-----S--TTS.........-H.HHHHHHHHHHHHHHH CS
        Cep3 112 elyegflkttitqlkkanfmanpdirliQiyliLsnTsflfeensladslllqclhvaKlfkiddfkplved.........sa.alrlskltleklwyr 200
                 +l ++ +k+tit l+ a+++an  i  +     L++  +++  +     ll  +l++aK + +d +  +ve          s   + l+++++++lw +
  KKY18444.1  25 KLSKQWYKATITCLHLAEYTANHHIYAVHAIATLTMSAHTIGMSGELAVLLGAALKIAKSLGLDRVEYKVEIdtvdatstdSHrRQVLQREKARRLWSQ 123
                 788999*****************************************************9987766554442234444433441456899********* PP

                 HHHHHHCT CS
        Cep3 201 lcilDYlq 208
                 lci+D+++
  KKY18444.1 124 LCIQDWFS 131
                 *****975 PP

>> TruB_N  TruB family pseudouridylate synthase (N terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.9e-05      0.23      20      71 ..      68     119 ..      65     131 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.9e-05
                 EEEEEEEEGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT CS
      TruB_N  20 tGvLvvavgeaTklleylleadKeYeatirlgaetdteDaegeileeekvek 71 
                 +G L v++g a k++++l  ++ eY+++i    +t+t+ +  ++l++ek+++
  KKY18444.1  68 SGELAVLLGAALKIAKSLGLDRVEYKVEIDTVDATSTDSHRRQVLQREKARR 119
                 789*****************************************99865554 PP

>> DUF1651  Protein of unknown function (DUF1651)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   6.4e-05      0.38      46      67 ..     107     129 ..      89     132 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.4e-05
     DUF1651  46 trr.rltlekArelWkellstGW 67 
                 +rr  l++ekAr lW +l  ++W
  KKY18444.1 107 HRRqVLQREKARRLWSQLCIQDW 129
                 455489***************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 3014.13
//
Query:       KKY18445.1  [L=581]
Description: putative g2 m phase checkpoint control protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-28   97.9   0.0    4.6e-28   97.1   0.0    1.4  1  LSM14     Scd6-like Sm domain
    8.8e-15   55.5   0.7    8.8e-15   55.5   0.7    2.2  3  FDF       FDF domain
    5.3e-06   26.5   0.1    1.1e-05   25.5   0.1    1.5  1  SM-ATX    Ataxin 2 SM domain


Domain annotation for each model (and alignments):
>> LSM14  Scd6-like Sm domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.0   7.7e-32   4.6e-28       2      74 ..      19      92 ..      18      93 .. 0.97

  Alignments for each domain:
  == domain 1  score: 97.1 bits;  conditional E-value: 7.7e-32
       LSM14  2 fIGskislisksdirYeGilceinledstiaLqnvrsfGtegrkdneq.ippskevyeyivFrgsDikdLevle 74
                +IG+k slisks+irY+Gil++in+e+stiaL++v+sfGte+rk++++ + ps++ ++yivFrgsD+kd++v e
  KKY18445.1 19 LIGQKFSLISKSEIRYVGILHAINPEQSTIALEQVFSFGTEDRKHGAEfVAPSNQKFDYIVFRGSDVKDIKVAE 92
                7***********************************************************************87 PP

>> FDF  FDF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.7     1e+04      42      68 ..     237     263 ..     218     270 .. 0.69
   2 ?   -3.5   0.1         3   1.8e+04      42      57 ..     351     366 ..     330     387 .. 0.51
   3 !   55.5   0.7   1.5e-18   8.8e-15       3     103 ..     414     525 ..     412     526 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.7
                 XXXXXXXXXXXXXXXXXXXBXXBXXXX CS
         FDF  42 aatatatneqpgekvegvdkkksffDk 68 
                 +++at ++  p+++  +v+ k s+ D 
  KKY18445.1 237 SKAATPKASTPSAPTPPVESKPSVADV 263
                 677888888888888888888888876 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3
                 XXXXXXXXXXXXXXXX CS
         FDF  42 aatatatneqpgekve 57 
                  a+a a+  q g +++
  KKY18445.1 351 VAAAMAKLPQAGSTAK 366
                 3333333333333333 PP

  == domain 3  score: 55.5 bits;  conditional E-value: 1.5e-18
                 SSS---HCCCCCTSSCCHHCCHHHCC.-XXXXXXXXXX.............XXXXXXXXXXXXXXXXXXXBXXBXXXXXXXEEEXTTXXEEEXXXHHHH CS
         FDF   3 feeDFDFesanakFnkkevfeellkk.aklkeeklaknen...........aatatatneqpgekvegvdkkksffDkiSsegnergaqeheseedddw 89 
                 ++ D+DFe anakFnk+++ +e++++ + ++e +++ n n           + +       +g+++++++++ sffD+iSse ++r+  +   e++++ 
  KKY18445.1 414 PKDDYDFETANAKFNKEDLIKEAIASgSPIGESAPDGNSNgildsaptngiERKDSIPSSVSGTNAQAYNRSSSFFDNISSELKDREDAK--AEGGRGR 510
                 679****************999887625689999999999****99988877777777788999**********************9999..7777888 PP

                 HHHHHHH..HHTTXX CS
         FDF  90 reerklnt.etfGvs 103
                 r+e+ +++ etfG++
  KKY18445.1 511 RGEEIKKNiETFGQG 525
                 988877777****97 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.1   1.8e-09   1.1e-05       8      80 ..      16      90 ..      10      91 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.8e-09
                HHTTTTSEEEEEETTS-EEEEEEEEE-T..T--EEEEEEEETTS..............-EEEEEEE-GGGEEEEXX CS
      SM-ATX  8 ltslvGkevevtvknGevyeGifstvslekdfsvvLkmarkvkk...anskssspssgeipdtliikakdivdiea 80
                + +l+G++ ++  k+  +y Gi++++++  ++ ++L+ +    +   + + +    s++  d ++++++d+ di +
  KKY18445.1 16 MDHLIGQKFSLISKSEIRYVGILHAINP-EQSTIALEQVFSFGTedrKHGAEFVAPSNQKFDYIVFRGSDVKDIKV 90
                679*************************.8**************765555888888999999**********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3916.02
//
Query:       KKY18446.1  [L=426]
Description: putative wd repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.2e-15   54.8   9.2      0.034   15.0   0.1    6.5  6  WD40          WD domain, G-beta repeat
    0.00052   20.3   0.0        1.6    9.0   0.0    3.9  4  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
     0.0024   16.6   0.4        0.4    9.3   0.0    3.2  3  Nup160        Nucleoporin Nup120/160
  ------ inclusion threshold ------
       0.39   10.8   4.1       0.69   10.0   4.1    1.4  1  Sigma70_r1_2  Sigma-70 factor, region 1.2


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   7.5e-06     0.034       3      38 .]      73     116 ..      71     116 .. 0.89
   2 !    5.6   0.0    0.0072        32       5      38 .]     132     170 ..     128     170 .. 0.69
   3 !    6.0   0.0    0.0053        24       4      24 ..     177     198 ..     174     217 .. 0.70
   4 ?    2.6   0.1     0.062   2.8e+02      10      34 ..     243     268 ..     235     270 .. 0.76
   5 !   11.3   0.0   0.00011       0.5       9      38 .]     303     333 ..     296     333 .. 0.88
   6 !   14.4   0.1   1.2e-05     0.055       1      38 []     337     373 ..     337     373 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.5e-06
                 EEEEEESS.SSEEEEE....EETTSSE...EEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtsla....fspdgaw...lasGsdDgtvriWd 38 
                  ++t+ G   +v++++    + p+g+    l++G++D+ + +Wd
  KKY18446.1  73 VTHTFVGPaAPVSCICihveNAPEGTVlqtLFAGCWDKQIWLWD 116
                 57999999888*****9999*******777689**********9 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0072
                 EEEESS.SSEEEEE....EETTSSE...EEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtsla....fspdgaw...lasGsdDgtvriWd 38 
                 r + GH ++v +l       +       l+sG+    + +Wd
  KKY18446.1 132 RRFQGHrDFVKALTvlsvPGQ---TtavLVSGGAESEILFWD 170
                 568899877776655333333...2344889*99*******9 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0053
                 EEEEESS.SSEEEEEEETTSSE CS
        WD40   4 lrtltGH.ssvtslafspdgaw 24 
                 l++l+GH  ++ +l+ +p+  +
  KKY18446.1 177 LHVLKGHtRGILDLKLDPSTVY 198
                 89*****766****99998877 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.062
                 S.SSEEEEEEETTSSEEEEEETTSEE CS
        WD40  10 H.ssvtslafspdgawlasGsdDgtv 34 
                 H +sv+s+ f+p ++ l ++s D+t 
  KKY18446.1 243 HeTSVYSIHFDPTSSDLWTCSADKTA 268
                 88889999999988876256668886 PP

  == domain 5  score: 11.3 bits;  conditional E-value: 0.00011
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  H ++v+s+ ++p  + +a++++D ++r+W+
  KKY18446.1 303 QHpDFVRSIVTHPTIPIVATACRDENIRLWN 333
                 48788*************************8 PP

  == domain 6  score: 14.4 bits;  conditional E-value: 1.2e-05
                 TEEEEEEESS.SSEEEEEEETTSSE....EEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgaw....lasGsdDgtvriWd 38 
                 g+++++++GH   vt+l+           ++s s Dgtvr Wd
  KKY18446.1 337 GKLIHIYEGHyEEVTGLC------IrgkdIISVSIDGTVRRWD 373
                 6899******988**993......33344567899*******8 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0     0.006        27      49      87 ..      50      87 ..      48      92 .. 0.82
   2 ?   -0.8   0.0      0.42   1.9e+03      51      80 ..     155     184 ..     151     191 .. 0.84
   3 ?   -0.5   0.0      0.34   1.5e+03      53      82 ..     206     235 ..     202     254 .. 0.76
   4 !    9.0   0.0   0.00037       1.6      41      85 ..     308     351 ..     289     379 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.006
  ANAPC4_WD40 49 dgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87
                 +++ + va s g+v+ +d ++++v h++  +    v+c+
   KKY18446.1 50 NEHGIYVAESAGTVKRIDLSTKEVTHTFV-GPAAPVSCI 87
                 678899********************994.444457776 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.42
  ANAPC4_WD40  51 klLavaysdgevrlldaesgkvvhslsvks 80 
                   +L+ + +++e+ + d+++g  +h l+ ++
   KKY18446.1 155 AVLVSGGAESEILFWDIKTGGRLHVLKGHT 184
                  58999999************9999887665 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.34
  ANAPC4_WD40  53 Lavaysdgevrlldaesgkvvhslsvksek 82 
                  L  a s  e+r++++ +   ++++s ks +
   KKY18446.1 206 LYSADSSREIRICSIPTSSPISTSSLKSVQ 235
                  677888999******999999999888765 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.00037
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                  vrs+  +p   + a a+ d ++rl + ++gk++h ++ + e+ vt
   KKY18446.1 308 VRSIVTHPTIPIVATACRDENIRLWNPSTGKLIHIYEGHYEE-VT 351
                  7777777888899*********************99988875.54 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.018        81     294     366 ..     205     269 ..     100     287 .. 0.72
   2 !    9.3   0.0   8.9e-05       0.4     229     254 ..     316     341 ..     297     353 .. 0.83
   3 ?    2.2   0.0     0.013        57     233     250 ..     360     377 ..     349     396 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.018
                 ..E--GGG-EEEEEEEEEEE-...SSSEEEEES-S------S-TT--EEEEEEEEE-TTEEEEEEEEEETTEE CS
      Nup160 294 vtyspssggefkvwkvkkedtsvslglvdlfleqtivpadpdssnvweLrDfaltssekgfelwalwknnegs 366
                  +ys++s+ e+ +  + +++ ++ ++l ++ l+    p    ++ v+++ +f++tss    +lw+   + +++
  KKY18446.1 205 TLYSADSSREIRICSIPTSSPISTSSLKSVQLSP---PLVIHETSVYSI-HFDPTSS----DLWTCSADKTAK 269
                 5577777777777776655543333333333333...555555557777.8888888....788776666655 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 8.9e-05
                 TTTEEEEEETT-EEEEEETTTTEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkcla 254
                 +  ++++++rd ++r+Wn +tgk++ 
  KKY18446.1 316 TIPIVATACRDENIRLWNPSTGKLIH 341
                 55689*****************9875 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.013
                 EEEEETT-EEEEEETTTT CS
      Nup160 233 lfalsrdgkLrvWnlltg 250
                 + ++s dg++r W+++++
  KKY18446.1 360 IISVSIDGTVRRWDVTSM 377
                 569************875 PP

>> Sigma70_r1_2  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.1   0.00015      0.69      15      30 ..     408     423 ..     407     426 .] 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00015
                   --THHHHHHHHHHHHC CS
  Sigma70_r1_2  15 LLtaeEEveLAkriea 30 
                   LLt eEE+eLA+ +++
    KKY18446.1 408 LLTEEEERELAELMAE 423
                   9***********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2690.62
//
Query:       KKY18447.1  [L=258]
Description: hypothetical protein UCRPC4_g04916 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00099   19.4   0.1     0.0031   17.8   0.0    1.7  1  PhyH      Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.7e-07    0.0031      91     204 ..      48     171 ..      34     178 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.7e-07
                 EEEEEEEE-TTTCB-EEEEE-SGGGST..EESGCCEEEEEEESS-B-TTBT-EEEETTGGGS-CCGTCCHHCSGCCTTS...............CCCTT CS
        PhyH  91 smyqdifkqpkiGgevqpwHqDstflp..tdpeesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteae...............ddeak 172
                 +++   +k+ ++ +    wH D  f+    d +e+ + v   ++d+ +e+G++++ P S  ++ ++    l e+++  +               d ++ 
  KKY18447.1  48 PEW--ENKEHNPKDLR-GWHVDGDFFIhfLDSPEQGLLVIPVFTDIIKEAGGTMICPSSVGKMAQY----LYEHPDGVTpqlqprsgplphkplDLTSL 139
                 555..67888888888.9****888765644478999999999****************9998775....4455555555667888****999988888 PP

                 TGHGSCEEEE.BTTTEEEEEETTSEEEE-TB. CS
        PhyH 173 kedeeeavpvevkaGdavlfhgrllHgsgaNr 204
                   +   + +++ + Gd++l h+  +H +++Nr
  KKY18447.1 140 VCKCGDFHEMTGNVGDVILLHPLMVHSASRNR 171
                 88999999999999*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1710.07
//
Query:       KKY18448.1  [L=1022]
Description: putative low temperature requirement a protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-43  148.1  27.6    5.1e-43  147.6  27.6    1.2  1  LtrA             Bacterial low temperature requirement A prot
     0.0005   19.9   0.0      0.002   18.0   0.0    2.0  2  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-


Domain annotation for each model (and alignments):
>> LtrA  Bacterial low temperature requirement A protein (LtrA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.6  27.6   5.7e-47   5.1e-43       2     349 ..     510     911 ..     509     917 .. 0.82

  Alignments for each domain:
  == domain 1  score: 147.6 bits;  conditional E-value: 5.7e-47
        LtrA   2 vswlELFFDLvfVvavtqlthalahdltgegllrflllffavwwaWvgftwlanrfdtddvvvrllllvqmaavlvlalsipeafeerglvfalayvvm 100
                 v  +ELF DL +V +++ +++a  ++ +g g+l+f+++f++ w +W + t ++n+f+ ddv+ r+++lv ++++l ++++i +afe++++ ++++y++ 
  KKY18448.1 510 VASFELFSDLLYVGIIEIVGEAASETASGVGFLHFIITFIITWKIWTDLTNIVNWFEVDDVLSRVMVLVYLVCLLGFTTNIIYAFETTYTPMIAFYIAE 608
                 6789*********************************************************************************************** PP

        LtrA 101 rlvlvlqylraaradpklsarrlarvyaagllisavlwlagallpgsarlvlwlvalliel...................................llv 164
                 r+++ l++l +a   p+   r  + ++ ++++++ +lw+++++++ + +l+ +++al+++l                                   +  
  KKY18448.1 609 RIFQGLYFLGVAYLVPT--IRGSMYCQSISIFVTCALWITSIHVEWPDQLLPIFIALFLDLfgyfifivffrwgqtkamaqtrglafsictgvhkmF-- 703
                 ****************8..599999999********************************************************7765443333330.. PP

        LtrA 165 Pllarkrt..tpvhaeHlaERygLfvIIaLGEsvvalgaglseqelsvevllaa...vlglvlaaalwwlYFdvdaaaaehaltsarrarlarsaygyl 258
                        +    ++ eH +ER++ fv +++G sv+a+    ++++ s ++ +++   +l+l+ aa++ w+YF+ d+ + +   ++ rr  ++  ++  +
  KKY18448.1 704 -------EfiPAINIEHRIERTNAFVTLVFGSSVLAII--YQNHHASSALSAFFgksCLALIQAASFNWMYFEIDSIRCH--VHAIRRHYISALLWQSA 791
                 .......36677************************54..44445444444444678*****************655555..3555566788999**** PP

        LtrA 259 hllivagiillavglelll..................ahpeelldlaaalllfggvalfllgllllk...........rvllgsvslsrlvllllllal 328
                 h+++++g++l+a+++++l+                   ++e++ +++ +++ +gg+ + l +++ +            r+   ++ l+r+ ++l+ + l
  KKY18448.1 792 HIPFIMGYVLAAAAMSKLVlahdssnanpeslgeeyiLESESEVAAFLRWYYCGGLSVALFSMATISichihkkvtgaRIKKNTRLLARCCVALI-ICL 889
                 *************************************4556678888888888886666655555555589998777443344444444443333.344 PP

        LtrA 329 lala.lvlaallalallalvll 349
                 l+l+     ++l l++++  l+
  KKY18448.1 890 LPLTsPSHLSSLSLMSITSSLV 911
                 4444344444444444444444 PP

>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.69   6.2e+03      43      61 ..      38      56 ..      28      65 .. 0.75
   2 !   18.0   0.0   2.2e-07     0.002      29      92 ..     239     360 ..     227     365 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.69
                     BHHCCTGTTB-HHHHHHHH CS
  dCMP_cyt_deam_1 43 gepaggsktiHAEvnAilk 61
                     +e +  ++t+HA v+A+ k
       KKY18448.1 38 HEVQTLTETVHALVLALPK 56
                     556677899***9999866 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 2.2e-07
                      EEEE.TTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHH.T.SSCE................................................. CS
  dCMP_cyt_deam_1  29 vivk.ngeiistgyngepaggsktiHAEvnAilkaakn.g.gskl................................................. 70 
                      v v  +g+ + t ++ e+++g ++ HA +  i+ +a + + g  l                                                 
       KKY18448.1 239 VAVAgDGRWLQTSFSDENEEGRPEHHALMRVIAMIAAKeRdGRGLprsrtlnsmddgqypvtdiekqyygmhntpipsdypgarhalpdgddig 332
                      4455589999*******************9999999886767666************************************************* PP

                      ......TTEEEEEEE--BHHHHHHHHHH CS
  dCMP_cyt_deam_1  71 ......egatlyvtlePCsmCakaiiqs 92 
                             g  +y t+ePC mC+++ + s
       KKY18448.1 333 qlgylcAGLDIYLTHEPCIMCSMVRVAS 360
                      **********************987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1022 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1012  (0.0564449); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.35s 00:00:01.23 Elapsed: 00:00:00.52
# Mc/sec: 5965.47
//
Query:       KKY18449.1  [L=771]
Description: putative ankyrin repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-10   39.3   0.0    3.2e-09   37.3   0.0    2.2  1  Ank_2     Ankyrin repeats (3 copies)
    2.8e-07   30.7   0.0      0.031   14.6   0.0    3.8  4  Ank_5     Ankyrin repeats (many copies)
    4.3e-07   30.1   0.0      0.001   19.4   0.0    3.2  2  Ank       Ankyrin repeat
    2.9e-06   27.2   0.0        0.2   12.3   0.0    3.0  2  Ank_3     Ankyrin repeat
    3.3e-06   27.5   0.0     0.0013   19.2   0.0    3.1  3  Ank_4     Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   8.9e-13   3.2e-09      25      81 ..     614     679 ..     591     681 .. 0.79

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 8.9e-13
       Ank_2  25 ngktaLhyAakngnleivklLleh.....ad....ndgrtpLhyAarsghleivklLlekgadinl 81 
                    t+L+yAa++g  ++v+l+le+     ++        tp h+A+++g++e+v+lLl+ ga++n 
  KKY18449.1 614 AQSTPLYYAARQGMSDVVRLILEEfgtkdLEtpggFFLSTPVHVASFYGYTEVVRLLLQAGANPNE 679
                 458**********99*******97776342253333367*******************99***996 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.2   1.5e+04      16      36 ..     410     430 ..     402     430 .. 0.79
   2 !    9.4   0.0   0.00037       1.3      17      37 ..     616     637 ..     613     646 .. 0.87
   3 !   14.6   0.0   8.6e-06     0.031      17      49 ..     652     684 ..     642     687 .. 0.87
   4 ?    1.4   0.0      0.12   4.2e+02      26      46 ..     694     714 ..     690     715 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.2
       Ank_5  16 gntpLhvAakygaadvvrlLl 36 
                  +t + +A+  g  ++vr+ l
  KKY18449.1 410 LYTSILLAIPDGDRRLVRRAL 430
                 578888999999999999866 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00037
       Ank_5  17 ntpLhvAakygaadvvrlLl.a 37 
                  tpL +Aa++g +dvvrl+l +
  KKY18449.1 616 STPLYYAARQGMSDVVRLILeE 637
                 49*****************944 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 8.6e-06
       Ank_5  17 ntpLhvAakygaadvvrlLlargadlnltdsrG 49 
                  tp hvA+ yg+ +vvrlLl  ga++n  + +G
  KKY18449.1 652 STPVHVASFYGYTEVVRLLLQAGANPNEINREG 684
                 3999***********************999988 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.12
       Ank_5  26 ygaadvvrlLlargadlnltd 46 
                 yg++d+v l++a g+d+++ d
  KKY18449.1 694 YGYWDIVDLYVAAGLDTRILD 714
                 9***************99987 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0023       8.4       4      23 ..     617     637 ..     616     645 .. 0.78
   2 !   19.4   0.0   2.9e-07     0.001       4      29 ..     653     679 ..     652     682 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0023
                 BHHHHHHHHTTHHHHHHHH.T CS
         Ank   4 TPLHlAatngkkriiklLL.h 23 
                 TPL +Aa+ g  ++++l+L  
  KKY18449.1 617 TPLYYAARQGMSDVVRLILeE 637
                 9******777778***98853 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 2.9e-07
                 BHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlna 29 
                 TP H+A+ +g +++++lLL  GAn+n 
  KKY18449.1 653 TPVHVASFYGYTEVVRLLLqAGANPNE 679
                 9******************66****95 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   8.8e-05      0.31       3      26 ..     616     639 ..     614     641 .. 0.91
   2 !   12.3   0.0   5.6e-05       0.2       4      30 ..     653     678 ..     650     679 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.8e-05
       Ank_3   3 etpLhlAarsgnleivkfLlenkg 26 
                  tpL++Aar+g  ++v+++le++g
  KKY18449.1 616 STPLYYAARQGMSDVVRLILEEFG 639
                 69*******************776 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 5.6e-05
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadvn 30 
                 tp h+A  +g +e+v++Ll+  ga++n
  KKY18449.1 653 TPVHVASFYGYTEVVRLLLQ-AGANPN 678
                 9*******************.9***99 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.9   1.7e+04      14      24 ..     469     479 ..     466     484 .. 0.76
   2 ?    4.6   0.0     0.014        52       2      22 ..     616     636 ..     615     646 .. 0.80
   3 !   19.2   0.0   3.7e-07    0.0013       3      37 ..     653     686 ..     651     691 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.9
       Ank_4  14 lelvrlLlekg 24 
                 ++++r+Ll+++
  KKY18449.1 469 IDACRSLLDFN 479
                 68999999653 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.014
       Ank_4   2 ltaLhyaaisgrlelvrlLle 22 
                 +t+L yaa +g  ++vrl+le
  KKY18449.1 616 STPLYYAARQGMSDVVRLILE 636
                 588999999999999999986 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 3.7e-07
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGet 37 
                 t+ h a  +g +e+vrlLl+ ga++n+  nr+Ge 
  KKY18449.1 653 TPVHVASFYGYTEVVRLLLQAGANPNEI-NREGER 686
                 899************************8.***985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.50
# Mc/sec: 4674.79
//
Query:       KKY18450.1  [L=605]
Description: putative major facilitator superfamily transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-34  117.3  30.6    7.2e-34  117.3  30.6    1.7  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.3  30.6     4e-38   7.2e-34       1     348 [.     168     551 ..     168     558 .. 0.81
   2 ?   -0.4   0.8     0.024   4.3e+02     218     263 ..     552     591 ..     549     603 .. 0.68

  Alignments for each domain:
  == domain 1  score: 117.3 bits;  conditional E-value: 4e-38
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsd..rfGrrrvlllglllfalglllllfasslwlllvlrvlqGl 97 
                 +++ +f++++a++i++++ p  ++e +gi  + ++l l+ly +g++v+ l++++ls+   fGr   +++++++f++ ++ l+++ ++  llvlr+l+G+
  KKY18450.1 168 IFIYTFVVYCASAIYTSSEP-QIMERFGIGQAKASLGLSLYVIGYGVGPLLFSPLSEvpFFGRNIPYIVSFASFVILSVPLALVDNYAGLLVLRFLTGF 265
                 6899****************.788*********************************5558****************565556688889********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........ 188
                 +++  +++g+a + d+f+  + + a+++++ag+ ++++lgpll+g+ +++ +Wr++ + +  +s    +lf++ +pe+  ++   + ++++        
  KKY18450.1 266 MGSPCLASGGATMQDMFSLLKLPYALSFWTAGAFCAPALGPLLSGFAVTAENWRWSLWEVLWMSGPIWILFFISMPETSAANILLRRAKRLrkltgndk 364
                 ********************************************************9999999999888755666666666666666666699999998 PP

       MFS_1 189 ........kgtgpaplvpawkallkdpvl.......w.illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrls.dr 270
                         +gt++++ +  ++all +  +       + + ++++++ +  +++++  +pl  +e +g++ l ++g l+ l+ ++g+il+ la++++ +r
  KKY18450.1 365 yrsrseidQGTKKFSTIV-YEALLIPFIIciqdpavLyVNIYSSIIYG-TYYSFFEAFPLVYVEEYGFN-LGELG-LVFLTIIIGCILG-LATYFAyQR 458
                 899998775555555555.66666655444333222224444444443.6777999999977*******.55555.4666667777776.666666699 PP

       MFS_1 271 ............lgrrrrlllallllllaalglallavtssavllllvlvl....iGfglgfvfpsllalasdlappeeagtasglfntagslg 348
                              + + rl+ +l+++ l+ +gl+++++t +++++++v+v+    +  g+++ f +++ ++   +p ++a+++++++ t +s+ 
  KKY18450.1 459 yylepdikknglRSQEHRLVPGLFAVWLLPIGLFWFGWTATPSIHWIVSVIpnilYAYGAFILFQCIFMYLPLTYP-QYAASLFAANDTSRSAL 551
                 999999888887777********************************99998886666666667777777777775.99999999999998854 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.024
       MFS_1 218 lfffgfsglltllplylqevlglsglllaglllallalvgailall 263
                  ++ ++++  +++ l     +g s  +l+g  l+++++vg+++   
  KKY18450.1 552 AAGSIIFAHPMYVNL--GIGRGVS--ILGG--LMVGGAVGIVVLYY 591
                 455567777777777..8888888..8888..88888888776444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 3709.20
//
Query:       KKY18451.1  [L=566]
Description: hypothetical protein UCRPC4_g04920 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.4e-127  424.4   0.0   6.7e-127  424.1   0.0    1.0  1  UPF0061   Uncharacterized ACR, YdiU/UPF0061 family


Domain annotation for each model (and alignments):
>> UPF0061  Uncharacterized ACR, YdiU/UPF0061 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  424.1   0.0  3.8e-131  6.7e-127      17     466 ..       5     530 ..       2     532 .. 0.86

  Alignments for each domain:
  == domain 1  score: 424.1 bits;  conditional E-value: 3.8e-131
     UPF0061  17 dfydeveaaefpkkilrvrndalleelgldeeevkdeelieifgke..........kgiepflalrYhGyQFGeynpqLGDGRgfllgqvrdkd.gely 104
                 + ++ v+++++++ +l++ + + l+++gl+++e++ e + e   ++          +g+ p+ a+ Y G+QFG++++qLGDGR++ l ++ + + g  y
  KKY18451.1   5 ALFTYVRPTTTEEPELLAVSAEALQDIGLEPSEASTEFFKEFVVGNkffwsegmpdEGVYPW-AQCYGGWQFGQWAGQLGDGRAISLVETTNPKtGVRY 102
                 56788999999999999999999************9999998877779*******99*****.************************9998855499** PP

     UPF0061 105 dfglKGsGlTPySRsaDGrlvLksgvREvlasealhklgvrtsralslie.tgekllRedePspersavvvRlarshiRfGtferlkylkrldllkkLl 202
                 ++++KG+G+TPySR+aDG++vL+s++RE+++se l+++ ++++ralsl   ++++++Re     e++a+v R+a+s+iR+Gtf+  + + + +l+++ +
  KKY18451.1 103 EIQVKGAGRTPYSRFADGKAVLRSSIREFIVSEYLNAIKIPSTRALSLSLcPKSQVVRE---RLEPGAIVARFAQSWIRIGTFDIQRSRGDRSLMRTTA 198
                 *************************************************99********...************************************* PP

     UPF0061 203 dyvieeyypel........adee........................ekyaqfyaelvervAelvAqWmaaGFchgVlNTDNmsilGeslDYGPyaFld 269
                 +yv e+ +  +           +                        ++++++y+e+v+r+A++vA W+a+GF++gVlNTDN+si+G+slD+GP+aF+d
  KKY18451.1 199 EYVTEHVFGGWdklpgvvnS--KddlaadphrnvakdaiegdegaeeNRFTRLYREVVRRNAKTVAAWQAYGFMNGVLNTDNTSIMGLSLDFGPFAFMD 295
                 ******77766444544440..1444555555555555666666666**************************************************** PP

     UPF0061 270 kydpkftaayfDyagrYsyanQpsiilwNLeqlaeplalli...........................eaeeleealeeykevyttkYaqlmlkkLGle 341
                 ++dp++t++++D + rYsy nQp+ii+wNL +l e+l  li                           + + +++  eeyk v++++Y++lm+++LGl 
  KKY18451.1 296 NFDPHYTPNHDDAMLRYSYRNQPTIIWWNLVRLGESLGELIgagdqvdeevfatkgvhedfapklikrAETLIDQIGEEYKAVFMAEYKRLMSARLGL- 393
                 *****************************************9888888888877777777666666633333344445********************. PP

     UPF0061 342 klsekekefdselleellelLqetqvdYneffveLaeskskkwr.....deaesileese........keleeekleeWrelYkkl.leeleedeleer 426
                  +s+ke++  ++l++e+l+ +++ ++d+n+ f++L++ k    +     ++a++i+ ++e        ++  +e l +W ++++++ +e+  e++  er
  KKY18451.1 394 -TSQKESD-FQNLFSEVLDTMEALELDFNHLFRRLSSVKVGDLDtdekrKQAAKIFFHHEgvtglnqtEDSASEMLAKWLDTWRQRvIEDWGESNDGER 490
                 .4555555.569************************998776662222244444444444776665443344499********765156677888899* PP

     UPF0061 427 aerlkkvNpktvllrplieeviekiaeeddlsplkkllek 466
                  + +k+ Np++v++ +l++e+ie++++++d + l++++++
  KKY18451.1 491 ISSMKSLNPNFVPRGWLLDEIIERVEKKNDREILDRVMNM 530
                 **********************************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3721.91
//
Query:       KKY18452.1  [L=346]
Description: putative 3-dehydroshikimate dehydratase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-28  100.0   0.1    1.6e-28   99.6   0.1    1.1  1  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.1   8.8e-33   1.6e-28       1     200 [.      25     274 ..      25     283 .. 0.87

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 8.8e-33
                   HHHHHHCT-SEEEEECCTCSHHHHC................HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHC.HTTCSHHHHHHHHHHHHHHHH CS
  AP_endonuc_2   1 laaaaeaGfdgvElfgrdlvpvsel................sdeelrelrkaldelglriaslslftrfgypded.erearreesvdalkraielaa 80 
                   l++a ++Gf+g+E+f+ dl   + +                +  +++++r ++d++ l+i +l++f++++++ ++ e+++     +++++ +i+la+
    KKY18452.1  25 LEQAYKYGFQGIEIFFEDLEHLAKRlgdgkgegnnpaldkdFTMAAQQVRDLCDQYQLEIICLQPFAGYEGLIDEnEHQEM----IEKVQLWIRLAR 117
                   67899*****************999***************99999**************************9886566666....************ PP

                   HHTBSEEEEEBCCGBCTTTSGHHHHHHHHHHHHHHHHHHHHHHT..SEEEEE--TTTTSSSTCHHHHHHHHHHTTTTEEEEEEHHHHHHH....... CS
  AP_endonuc_2  81 aLGapllvlhpGtagagpkgseeeawerlaeslneladyaekeg..vklalEtlagsgvelgdeelarlldavdspnvgvclDtgHllia....... 168
                    L ++++++++     +++     +  +++++++e+ad +      +++a+E+la+  + + +e +++++++vd pn+g+clDt+++  +       
    KKY18452.1 118 ILRTDIIQIPSN---TRQDARVTGDMGKIVADMREIADLGLSFTppIRFAYENLAWGSHVDTWEAAWEIVERVDKPNFGMCLDTFNITGRiwadpsv 211
                   **********77...99999999****************9877799*************************************************** PP

                   ........TTTHHHHHHHHHGG.........EEEEEE.EESS..................TTTTSST CS
  AP_endonuc_2 169 ........eedvddalraladr.........ikhvHikDakg..................dlgagrd 200
                           +    ++lra  +r         i +v+++ a++                  ++ ++r+
    KKY18452.1 212 esgknqnaG----EWLRASMERmkdqvdvrkIWYVQVVGAERmriplserhpwwkeeqpnRMTWSRN 274
                   ****55554....555555555444499999999999999887777666666666666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2383.57
//
Query:       KKY18453.1  [L=554]
Description: putative splicing factor 3b [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-61  203.9   1.6    1.9e-60  202.6   1.6    1.8  1  DUF382         Domain of unknown function (DUF382)
    2.2e-21   75.5   6.9    4.8e-21   74.4   6.9    1.6  1  PSP            PSP
  ------ inclusion threshold ------
        5.1    5.4   5.1        8.4    4.7   5.1    1.2  1  Cytomega_UL84  Cytomegalovirus UL84 protein


Domain annotation for each model (and alignments):
>> DUF382  Domain of unknown function (DUF382)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.6   1.6   3.2e-64   1.9e-60       1     127 []     130     256 ..     130     256 .. 0.99

  Alignments for each domain:
  == domain 1  score: 202.6 bits;  conditional E-value: 3.2e-64
      DUF382   1 kkPevvevaDvdakdPvllvklKssknvvpvpshWsskreylsgkrglekkpfelPkfikeTgieelrealeekeeekslkekarekvqpklgkldidy 99 
                 kkPevve++D++a+dP+llv++Ks++nvvpvp+hWs kreyls+krg+ek+pf lPkfi+eTgi+e+r+a+ ek++e +lk+k+re+vqpk+gkldidy
  KKY18453.1 130 KKPEVVEWTDTSAPDPRLLVHIKSYRNVVPVPTHWSLKREYLSSKRGVEKPPFALPKFIQETGIAEMRDAVLEKQNEATLKQKQRERVQPKMGKLDIDY 228
                 58************************************************************************************************* PP

      DUF382 100 kkLhdaFfklqtkPkllkfGdlyyegke 127
                 +kL++aFf++qtkP+l+++G++yyegke
  KKY18453.1 229 QKLYEAFFRFQTKPELTRYGEVYYEGKE 256
                 **************************97 PP

>> PSP  PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   6.9     8e-25   4.8e-21       1      46 []     265     310 ..     265     310 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 8e-25
         PSP   1 kPGviSaeLReALglqegqlPpWiykMqrlGlPPgYpklkipGlna 46 
                 +PG++S+eL++ALg+++g +PpW+++Mqr+G+PP+Yp lkipGlna
  KKY18453.1 265 RPGELSDELKDALGMPPGYPPPWLINMQRYGPPPSYPALKIPGLNA 310
                 8*******************************************96 PP

>> Cytomega_UL84  Cytomegalovirus UL84 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   5.1    0.0014       8.4     130     185 ..     335     392 ..     327     398 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0014
  Cytomega_UL84 130 stplqlgeangesqtapatsqeeetaas..hepekkkekeekkeeededdrnddrerg 185
                      pl  g+  g  qt   t q e        e +   e  e  eeeded+ +dd +r 
     KKY18453.1 335 NRPLYGGDIFGVLQTQQNTQQGEPVEKDlwGELQAPEEESEEEEEEDEDEEEDDEDRA 392
                    5688899999999999999999966655114555556666777888999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1135  (0.0633053); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.53
# Mc/sec: 3136.97
//
Query:       KKY18454.1  [L=532]
Description: putative glutamyl-trna amidotransferase subunit a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-89  301.0   0.0      2e-89  300.6   0.0    1.1  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.6   0.0   1.1e-93     2e-89      44     451 .]      98     512 ..      87     512 .. 0.90

  Alignments for each domain:
  == domain 1  score: 300.6 bits;  conditional E-value: 1.1e-93
                 ...TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE--SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTT CS
     Amidase  44 ekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgkTnmdefamgsstensvfgptrNPwdksrtpGGSSGGsAAavAag 142
                 +   L G  i++KDni+v+gv++t G  a  +++++ Dat+v+rL +aGa+i gk++++  ++g+ +++s++gp++NPw  +++ GGSS+G+A +vA+g
  KKY18454.1  98 KSNLLSGKTIALKDNIAVAGVRCTNGNTA-VDWTPQIDATIVTRLLDAGAIIKGKATCENNCFGAVSDTSITGPVHNPWADEYSTGGSSSGCARLVASG 195
                 67789*********************876.689****************************************************************** PP

                 SSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEEEESSHHHHHHHHHHHBS--TT-TTS----.........HHHHHHHHCTT CS
     Amidase 143 lvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGplarsvedlalllrvilgedpkdstssvip.........eesedlaeelk 232
                  v++aiG D GGSiR+P+s cg+vG+KPt+g++++ gv++le+++d++Gp+a++v d+a l++v++ged  d++ ++ +           ++ l+ +++
  KKY18454.1 196 AVDMAIGADQGGSIRLPSSNCGIVGFKPTWGLIPYTGVISLEATIDHAGPMAKNVPDTARLMDVLAGEDGLDDRIPYTVkvgdvqyaeGIQKRLQLPKE 294
                 *********************************************************************99998888779999999887789999**** PP

                 ---TT-EEEEEGGGC.SS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHHHHHHHHHHHHHHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS- CS
     Amidase 233 kslkglriGvvkedg.vasldpevqravekalkaLeeaGhevvevelpsleealslyylilvaeassnlarylgvryerlsetkvlsellpksraellg 330
                 ++lkgl+iG+++e +   + dp+v+++v++a+++ +e G+ev+  ++p ++ a  ++  +l+ ++   l      + +++  t +ls++ +     + +
  KKY18454.1 295 QRLKGLKIGILEEGFqDPKQDPNVEALVRSAAEKFTEFGAEVESCSIPLHKDAGMIWACALPMAGRRQLF---LTDRHPPTPTPYLSQFAFDALGPGGQ 390
                 *************99777899*********************************9999999988886654...33346888888888888888888877 PP

                 HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCCBSEEEEESSSSS--BCCCCCHHHCSHHHHHGCCTTT...HHHHHTT--EEEEECCC CS
     Amidase 331 eevkrrielgnyalsaeasskyylkaqkvrrllrrefakafeelDvllsPtaptpaprlgekdktidsytvlynlldftavvvpvnlaglpalsvpagk 429
                 ++  r+++l   ++  +       k  ++ r+l+++++ af+++D+ll+Pt+p+p++++ +  ++++    l +   +  +++p+n  g+pals+p+g+
  KKY18454.1 391 NIYLRHLHLTR-NYGPR----LHGKTMNILRRLTDSYNHAFRTYDILLTPTTPCPPVKILHSWNQGNPLERLVRTTGVSTNTAPFNSSGHPALSLPVGF 484
                 77777777666.33333....4899*********************************999888774444555555555588****************9 PP

                 C.T......TECEEEEEEESTT-HHHHH CS
     Amidase 430 s.ed.....glPvGvqvigkafqeetlL 451
                   ++      lP G+q++g+++++ ++L
  KKY18454.1 485 VpAKddtsvKLPAGMQLVGRQGEDLKVL 512
                 965589999**************98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.53
# Mc/sec: 3032.38
//
Query:       KKY18455.1  [L=1472]
Description: putative copper amine oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.8e-162  538.9   0.0   1.2e-161  538.2   0.0    1.3  1  Cu_amine_oxid    Copper amine oxidase, enzyme domain
   9.2e-137  457.3  33.6    3.2e-80  270.5  18.5    2.1  2  OPT              OPT oligopeptide transporter protein
    7.8e-05   22.8   0.0    0.00016   21.8   0.0    1.5  1  Cu_amine_oxidN2  Copper amine oxidase, N2 domain
  ------ inclusion threshold ------
      0.015   15.7   0.0      0.036   14.5   0.0    1.7  1  Cu_amine_oxidN3  Copper amine oxidase, N3 domain


Domain annotation for each model (and alignments):
>> Cu_amine_oxid  Copper amine oxidase, enzyme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  538.2   0.0  2.8e-165  1.2e-161       1     409 [.    1000    1404 ..    1000    1405 .. 0.98

  Alignments for each domain:
  == domain 1  score: 538.2 bits;  conditional E-value: 2.8e-165
                     .----TT---SEEETTTEEEETTEEEEEEEETTTEEEEEEEEETTEEEEEEEEEEEEEEEE--SSHHHHH-EEEGGGT.-SGGG-----TTTSS CS
  Cu_amine_oxid    1 levvqpeGpsfkvdegnlvewqkWsfrvgfnrreGlvlhdvrykgrrilyrlslsemvvpYgdprppasrkaafDlgeyglGklansLelgcDC 94  
                     l+v+qp+Gpsfkv++++l+ewqkW+frvgfn+reG++lhd++y+gr+++yrls+sem+vpYgdprpp++rk+afD+g+ g+G++an+L+lgcDC
     KKY18455.1 1000 LNVIQPDGPSFKVSDESLIEWQKWRFRVGFNPREGATLHDIHYDGRSLFYRLSFSEMTVPYGDPRPPFHRKQAFDFGDGGAGQSANNLALGCDC 1093
                     589**********99******************************************************************************* PP

                     -TT-EEEEEEEEE..TEEEEEEEEEEEEEEE-S-SEEEE-S....EEEE--EEEEEEEEEEETTEEEEEEEEE-TTS-EEEEEEEEE----EE- CS
  Cu_amine_oxid   95 lgeityldavladssgepvtiknaiCifEedagilwkHtdfrtgraevtrnreLvvrtiatvgNYdYifdyiFkqdGsievevratGilstaal 188 
                     lg i+yld+ +++++g+p   kn++Ci+E+d+gi wkHt+frt+ra+vtr+reLvv++i+t++NY+Yif+y+F q+G +++e+ratGi+s+  +
     KKY18455.1 1094 LGVIKYLDTNMVTTEGHPSLSKNVVCIHEQDNGIGWKHTNFRTNRAVVTRARELVVQFIITLANYEYIFAYKFSQAGDVTFETRATGIVSVVNI 1187
                     ********************************************************************************************** PP

                     T.....GG--EEETTEE---EEEEEEEEEEE-T.SSEEEEEEEEE-T..TT.T-...-EEEEEEEEEE--BGGG-EE--.-GG-EEEEEEEEEE CS
  Cu_amine_oxid  189 aeeeeskygtrvapgvlasiHqHlfslrvDldidgeknsvveeelvpeepelgeenpagnafkvektvletekeaaldldpeknrvlkivnenk 282 
                     +++++s++g+ v+pg la++HqH+f+lr+D++idg++n++++ee+ p+ p   + np gn+++v +t+++t+  ++ld++p++n ++ki+n+++
     KKY18455.1 1188 DPGKTSPWGKIVSPGALAQNHQHIFALRIDPAIDGHRNTIIKEESLPI-PMSPDLNPWGNGYQVLSTPIKTS--THLDASPQTNLTIKITNPHN 1278
                     ***999***************************************994.4444589****************..88****************** PP

                     E-.TTS-EEEEEEE-S----..---SS-TTTTTTTGGGG-SEEEEE--TT---S--TTGG-TTS.-.--GGGG-.S--B-SSEEEEEEEEEEEE CS
  Cu_amine_oxid  283 kn.klgepvgYklvpssaasqlllakesslvakraefakhhlwvtkykdselyaageynnqskgep.vglakwvednesieneDlVvWvtlGlt 374 
                      n ++++pv+Yk++p  +a+qllla+++s vakra+fa+hhlwvt ykd+e +a g+y+ qs++ + +g+a+ v+++++++++D+V++  +Glt
     KKY18455.1 1279 INpISRTPVAYKFIP--SATQLLLADPNSIVAKRAQFAQHHLWVTSYKDNEFFAGGRYTSQSQE-EiEGVADAVARKDNVQDTDVVIYSVFGLT 1369
                     ***************..56999****************************************99.559************************** PP

                     E---GGGSS-TTTSEEEEEEEEES-SSS-GGGG-S CS
  Cu_amine_oxid  375 HvpraeDfPvmpvetvsflLkPvnFfdenpaldvp 409 
                     H+pr+eD+Pvmp+e+++++L+P++Ff++npa+dvp
     KKY18455.1 1370 HNPRVEDWPVMPMEKHELHLRPADFFTRNPAIDVP 1404
                     *********************************98 PP

>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.0   8.1     1e-60   4.7e-57       2     189 ..     113     303 ..     112     304 .. 0.99
   2 !  270.5  18.5   7.1e-84   3.2e-80     267     616 .]     301     689 ..     298     689 .. 0.94

  Alignments for each domain:
  == domain 1  score: 194.0 bits;  conditional E-value: 1e-60
         OPT   2 lTlRavvlGillgvlgsavnmyfglrtglvsissipaallafplgkalarilpk.....lslnpgpftikEnvliqtmasaaatlalatglivvipale 95 
                 lT+R ++lGi+l+v+gs++  ++++++++v++s+i++a++a+ +g +l+ ++p+     +++np pf+ kE+++i++ma+aaat+al+t++++v++++ 
  KKY18455.1 113 LTFRFWFLGIGLAVFGSVLEEIYYFKPQTVYVSVIFLAVIAYVFGLLLEAFIPRtgwigRWFNPHPFNAKEHAAIVIMANAAATSALGTEVLAVQRLW- 210
                 8*************************************************************************************************. PP

         OPT  96 lygqsagfgylillslsvqllGvgfagplRkflvypeklifPsglataellkalhkpegeeksrlkfflivflgsfvwglfplylfpalssfsw 189
                  yg++++fg+ i+l+ls+qllG+g+ag+lR+ lvyp+k+++P +l+  +ll++lh  ++e+++rlk+f+i+f++ fvw++fp y++p+l++ ++
  KKY18455.1 211 -YGTDPNFGTSIFLLLSSQLLGYGIAGLLRRTLVYPTKMLYPINLPLNTLLETLHRDRKETSHRLKIFWIAFGALFVWEVFPKYIMPILTGTAI 303
                 .****************************************************************************************99776 PP

  == domain 2  score: 270.5 bits;  conditional E-value: 7.1e-84
         OPT 267 teildedgvldyekyigyglmllaalvallylvqfaaitllivhtilkhgkdikaalksa............................rsprteeddrh 337
                 t ilde+ vld+ k +++g++++aa++ +++l+++ ait++++h++l++++d+k+a++ a                            +    e  d+h
  KKY18455.1 301 TAILDENNVLDESKLKEIGVPYFAATWGVYLLSTNIAITATLTHMLLWNYDDMKSAWSFAswsnvkkitnpsswnlqfwqtdgsvestEDVDGEDIDPH 399
                 689******************************************************9999************999999998777543335555556** PP

         OPT 338 rrlmrkykdvpmwwylallvlslvigiivvealftqlpvwglllalllafllaivsaiiaGltglnpvsgigkltqlifgallpgrpvanlvfgavvya 436
                 ++lm +y+d p+wwy ++l++s+ +g++v++ ++ +lp+w +++++ll+++ +++++  ++ltg+  ++ i+ l q+i g++ pgrp+an++f+ ++y+
  KKY18455.1 400 YKLMLRYPDAPNWWYGCVLAASFFVGMVVIYTVESTLPWWSFIISILLSAIGILFFTAQYALTGF--QFIIQPLIQMIGGYINPGRPLANMYFTLFGYN 496
                 *****************************************************************..******************************** PP

         OPT 437 aaaqagdfmqDLKtGhllkasPraqfvaqliGtlvgavvniavlkllvkaygdict.adasnaftaPqakvfaavavl..lvggk........kglpwa 524
                 ++ q++ +++DLK++++++++Pr +f+aq++Gt++g+++n+ ++  ++++++di+   +++n ++++++++++++a++  +++++        ++++ a
  KKY18455.1 497 SVVQGQLLARDLKLAQYAHVPPRVTFIAQMVGTIIGCIFNYIMMVSIIDNQRDILLsIEGTNIWSGQNVQSYNSQAIAwgGLAKHmfsvgeryQWVTLA 595
                 *******************************************************9*********************88777777********99**** PP

         OPT 525 fllgavapfilllllkkfpkkstarklplplafavgfylppsl..si.alligglianlwlkrrdaewakkynyvlaaGLiaGealmgviiaflv 616
                 fl+g+++p++++ l++ fp ++ ++++++++   + ++l + +  si +++++g++++++l+++++ +++kyny+l+a+++ G++++ +i++f+v
  KKY18455.1 596 FLIGFIVPLPTYFLHRLFP-RAGFWYFNSAISAYYIGWLCVGInsSIlSYFMVGFFSQWYLRKYKPGFFAKYNYLLSAAMDGGTNVIVFILTFAV 689
                 *******************.8889999999998877775554444667********************************************986 PP

>> Cu_amine_oxidN2  Copper amine oxidase, N2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   3.6e-08   0.00016       1      80 [.     757     847 ..     757     853 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 3.6e-08
                      HHHHHHHHHHHHHCCCCCCCCTCT-TTSEEEEEEEEE---HHHHHHH........HHCH---S-EEEEE..EEEETSSS...SEEEEEEEEEE CS
  Cu_amine_oxidN2   1 hpLdaltaaeinkvesilkssaletskknsffeveLeePdKkavlqf........lekgeppppRkAsv..vilfGkqt...kelvvdLatgk 80 
                      hpLd l a ei+k+++i+ ++    +k + f  +  eeP+Kk  ++f        l+ ++p+p+R A+v   +  G+++    e v+dL  g+
       KKY18455.1 757 HPLDQLNAGEIQKAREIILQAR--GQKVIDFRCIFTEEPPKKELVEFlklehsgsLSAESPHPARCARVqyDVINGDKShdvSESVIDLDAGR 847
                      9****************99999..8999*******************99999999999*********97334778887755568999998876 PP

>> Cu_amine_oxidN3  Copper amine oxidase, N3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   8.1e-06     0.036       1      91 [.     860     954 ..     860     958 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.1e-06
                      S---HHHHHHHHHHHHTGGGGHHHHHHHHTTT.T---EEEE--SS-SSST.T--EEEEEEEE--SSS.....-GCGSEEE.EEEEEE--SSSGG CS
  Cu_amine_oxidN3   1 ppvlleelaeieevikelpqfkealkkrgienldkvvltpltvgyrgeksegkRllkalvyyrtesa.....nlyahPiegLellvDleakkvi 89 
                      p+++ ee+ + +++ +++p fkea++k  i +     ++p+  g  +  ++  R ++ l++ r+ s+     n y  Pi  + +++D+ + +vi
       KKY18455.1 860 PSFTPEEFSKFTKTCFDSPLFKEAIAKFKIPEGFVIEIDPWPYGGPDPGEKFTRYTQGLCFARDASNnnpdsNHYGYPIP-IIPVMDTFTGEVI 952
                      67899**********************996665666799**99988888889**********99988788899*******.******9998888 PP

                      G- CS
  Cu_amine_oxidN3  90 ei 91 
                        
       KKY18455.1 953 RV 954
                      75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.54
# Mc/sec: 8256.13
//
Query:       KKY18456.1  [L=340]
Description: putative dna repair protein rad57 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-40  137.4   0.0    1.6e-39  135.7   0.0    1.8  1  Rad51     Rad51
    1.2e-08   34.6   0.0    2.2e-08   33.7   0.0    1.4  1  ATPase    KaiC
    5.7e-08   32.6   0.1    9.1e-08   31.9   0.1    1.3  1  AAA_25    AAA domain
    0.00032   20.2   0.3      0.023   14.2   0.0    2.1  2  RecA      recA bacterial DNA recombination protein
     0.0014   18.0   0.2     0.0055   16.1   0.2    1.7  1  DnaB_C    DnaB-like helicase C terminal domain
      0.006   16.8   0.0       0.01   16.1   0.0    1.4  1  AAA_22    AAA domain
  ------ inclusion threshold ------
      0.011   16.1   0.1      0.018   15.5   0.1    1.3  1  AAA_16    AAA ATPase domain
       0.04   13.8   0.1      0.066   13.1   0.1    1.5  1  NACHT     NACHT domain
      0.042   13.6   0.0      0.057   13.1   0.0    1.2  1  AAA_24    AAA domain


Domain annotation for each model (and alignments):
>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7   0.0   8.1e-43   1.6e-39      25     243 ..      21     324 ..      14     340 .] 0.85

  Alignments for each domain:
  == domain 1  score: 135.7 bits;  conditional E-value: 8.1e-43
                 HHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHHHHTTS-TTTS--SSEEEEEESSS---GGGGHHHHHHT.T--..HHHHGGGEEEEE--ST...THH CS
       Rad51  25 klDelLgGGietgsiteifGefrsGktqlchtlcvtvqlplelgGgegkavyidtegtfrperlveiaery.kld..keevlenvayaRayti...ehq 117
                  lD+ L GGi+tg +tei Ge++ Gktq+  tl +++qlp+  +G  +  +yi+te+ + ++rl +i +   ++    e+v  +    Ra  +   e q
  KKY18456.1  21 VLDRALAGGIPTGYVTEITGESGVGKTQFLLTLLLAAQLPKP-QGLGRSSIYISTEAPLSTKRLSQILNSNlSMTnlAEDVRPRLENVRAVPCgdlEAQ 118
                 69**************************************65.6788899*****************94432443124566556666666655555*** PP

                 HHHHH.HTHHHHHHS-EEEEEEETTTGGGCH-..------THHHHHHHHHHHHHHHHHHHHH--EEEEEEE----........................ CS
       Rad51 118 eellq.qaaallaedkfallivDsvtalyRtd..fsgrgelakRqqklgkllrtLrkladefevavvitnqvvaq........................ 189
                  ++l+ q++a + + +++l+++Dsv+a+yR++   s    la+R ++l+kl + Lr+la e ++avv++nqv+++                        
  KKY18456.1 119 DHILEfQLPAAVEKYNVGLVVLDSVAANYRAEqaSSVPKALADRARRLAKLGHLLRRLAVEKDIAVVVANQVSDRldnsisrvpylpasslhssspvhs 217
                 ********************************54455689*********************************************************** PP

                 ...................---.------.........------HHHHHHHH-SEEEEEEE-ST.........................TEEEEEEES- CS
       Rad51 190 ...................vdgqaalfsa.........dpkkPigGlvlahasttRlalrkgkg.........................eeRivkvvds 235
                                    +d q  +f++           k P +Gl ++++++ R+al+ + +                         ++R +k+v s
  KKY18456.1 218 sspvpsqhiqpvgenstlsLDSQQRFFTGwgdegawtpGLKTPALGLGWSNQIACRIALKMDGNqvhdpiilqgpdgqtvggniwstrrSRRYMKIVFS 316
                 *******************999999999999999998889*******************8765567777777777788888887777777777788877 PP

                 SSS-S-EE CS
       Rad51 236 Pnlpelea 243
                 P  + +e 
  KKY18456.1 317 PLAASHEQ 324
                 77776664 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.1e-11   2.2e-08       7     146 ..      21     161 ..      19     193 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 1.1e-11
      ATPase   7 glDeilkgGipegrvvlitGepGtGKtifalqFlikga....ekygepgvfvtveepa.edlrenakslGwdlekleeegklaiidasesaeesaeekd 100
                  lD+ l gGip g v+ itGe+G GKt f l+ l+       +  g+  +++++e p  ++   ++ +    +++l e  +  + ++ +   +    + 
  KKY18456.1  21 VLDRALAGGIPTGYVTEITGESGVGKTQFLLTLLLAAQlpkpQGLGRSSIYISTEAPLsTKRLSQILNSNLSMTNLAEDVRPRLENVRAVPCG----DL 115
                 59*************************9999988764312223479*********99864555666677777888888877777777777776....44 PP

      ATPase 101 kedleelieelaeaikeikakrvviDsitglayeekeavaReilrq 146
                 +++ + l  +l  a++++++  vv+Ds+++  + e+++ + + l  
  KKY18456.1 116 EAQDHILEFQLPAAVEKYNVGLVVLDSVAANYRAEQASSVPKALAD 161
                 677778999********************99444555555555555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.1   4.5e-11   9.1e-08      25     186 ..      25     187 ..      11     193 .. 0.74

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 4.5e-11
      AAA_25  25 lvkgllpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal......rddarllvldlagveslpLf 117
                  + g +p g ++ ++G +g+GKt ++l l la  + kp  g      +  +y+s+E +     +Rl++++  +      ++d r ++ ++     +p  
  KKY18456.1  25 ALAGGIPTGYVTEITGESGVGKTQFLLTLLLAAQLPKPQ-G----LGRSSIYISTEAPL--STKRLSQILNSNlsmtnlAEDVRPRLENV---RAVPCG 113
                 556667**************************9987764.5....588**********9..899****9966668886644444444444...445777 PP

      AAA_25 118 akdrggtlltadvdaleaaieevegvrlvviDplsralggdensnsd.........vgalvealeriarrtgaavllv 186
                 ++++++++l+    +l aa+e+ ++v+lvv+D++++ ++++  s+            ++l   l+r+a ++++av++ 
  KKY18456.1 114 DLEAQDHILEF---QLPAAVEK-YNVGLVVLDSVAANYRAEQASSVPkaladrarrLAKLGHLLRRLAVEKDIAVVVA 187
                 77888888753...699*****.78***********999955544222344454333555556666666777776665 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.1e-05     0.023      40      78 ..      21      58 ..       1      92 [. 0.72
   2 ?    4.3   0.1     0.012        24     127     192 ..     130     193 ..     116     199 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
                HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH CS
        RecA 40 aldialGiGGlpkGriieiyGpessGkttlalhaiaeaq 78
                 ld al  GG+p G ++ei G    Gkt + l ++  aq
  KKY18456.1 21 VLDRALA-GGIPTGYVTEITGESGVGKTQFLLTLLLAAQ 58
                6899997.********************87666554443 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.012
                 HTTT--SEEEEE-TTT---STT-----------HHHHHHHHHHHHHHHHHTTT--EEEEEEE---- CS
        RecA 127 vrsgaidlivvdsvaalvpkaeieGemgdskvglqarlmsqalrkltgaisksntvvifinqirek 192
                 v+   + l+v+dsvaa   +ae    + ++ ++ +ar +++    l     +++++v+  nq+ ++
  KKY18456.1 130 VEKYNVGLVVLDSVAAN-YRAEQASSVPKA-LADRARRLAKLGHLLRRLAVEKDIAVVVANQVSDR 193
                 5667899********96.588888887765.45556655554444444445667788888888765 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   2.8e-06    0.0055      12     192 ..      26     204 ..      20     221 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.8e-06
                 HCTSBXTTXEEEEEEXTTSSHHHHHHHHHHHHHHCSTSEEEEEESSSXHHH.HHHHHHHHHHTXXHHHHHHTTSXHHHHHHHHHHHHHHHHSEEEEEEX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  12 ltsGlqkgdliiiAarpsmGktalalniaenaavkeklpvavfslemsaeq.lvqRllsseaeidskklrtgklkeedweklteaieelseaklfiddt 109
                 l +G+  g ++ i + +++Gkt + l++  +a   + ++    s+  s+e  l ++ ls   +i +++l  ++l e d++   e+++ +   +l  +d 
  KKY18456.1  26 LAGGIPTGYVTEITGESGVGKTQFLLTLLLAAQLPKPQGLGRSSIYISTEApLSTKRLS---QILNSNLSMTNLAE-DVRPRLENVRAVPCGDLEAQD- 119
                 557788899999999********999999888876777777777777766426666665...78888999999988.555555555666665555555. PP

                 SSXCHHHHHHHHHHHHHHTTEEEEEEEEGGGTBTSCS.......SSCCCHHHHHHHHHHHHHHHHCTSXEEEEEEXSGGGCCSCCHSXXH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C 110 paltvseirskarrlkkekglgliviDyLqlmegsee.......kenreqevseisrsLkalakelnvpvialsqLsravesredkrPvl 192
                  ++   ++ + +    ++ ++gl+v+D +     +e+         +r + ++++ + L+ la e ++ v++  q+s ++++  ++ P l
  KKY18456.1 120 -HILEFQLPAAV----EKYNVGLVVLDSVAANYRAEQassvpkaLADRARRLAKLGHLLRRLAVEKDIAVVVANQVSDRLDNSISRVPYL 204
                 .33344444444....44689******99876533222346644559********************************99988888875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     5e-06      0.01       6      98 ..      34     141 ..      31     187 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5e-06
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee..erpevvfvtlpsstsskdllrellralglelka.................erlsseellealeqa 85 
                 +++ +tGesG+GKT  l +ll  ++  +k++   +++ +++ ++p st  k l + l ++l   + a                  +++ + l  +l  a
  KKY18456.1  34 YVTEITGESGVGKTQFLLTLLLAAQ-LPKPQGlgRSSIYISTEAPLST--KRLSQILNSNLSMTNLAedvrprlenvravpcgdLEAQDHILEFQLPAA 129
                 56779***************99984.4555554544444455555555..5555555555544444444455555566666664444444444555555 PP

      AAA_22  86 lraravielliiD 98 
                 ++++ v +l+++D
  KKY18456.1 130 VEKYNV-GLVVLD 141
                 555555.666666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.1   8.8e-06     0.018       9     132 ..      15     178 ..      12     195 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 8.8e-06
      AAA_16   9 leqLlsalervrsgrp...elvllsGesGvGKsslvrellralekd.......ggiflrgkcdqlesaipysa..laqalareellrqlldeaesaele 95 
                 ++ L  +l+r+ +g+     ++ ++GesGvGK+  + +ll a++           i++++++  +       +  l q+l ++ l         ++++e
  KKY18456.1  15 ISLLDPVLDRALAGGIptgYVTEITGESGVGKTQFLLTLLLAAQLPkpqglgrSSIYISTEAPLS-------TkrLSQIL-NSNLSM-------TNLAE 98 
                 6677888888888888665556699********99955553333322354442233344444444.......11133333.223333.......33444 PP

      AAA_16  96 awrekleeala.........................................avpelagaea..srllellkrllallsr 132
                 + r +le + a                                         ++++++ a+a   r l++l +ll++l+ 
  KKY18456.1  99 DVRPRLENVRAvpcgdleaqdhilefqlpaavekynvglvvldsvaanyraeQASSVPKALAdrARRLAKLGHLLRRLAV 178
                 44444444333545555588888888888888999999999999777777764444444444447777777777766655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.3e-05     0.066       5      45 ..      38      77 ..      34     200 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.3e-05
                EEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTT CS
       NACHT  5 lqGeaGsGKTtLlqklalawaegklpqgafklvFflslrel 45
                ++Ge+G+GKT +l  l la++ +k+++   + ++++s  + 
  KKY18456.1 38 ITGESGVGKTQFLLTLLLAAQLPKPQGL-GRSSIYISTEAP 77
                89*******************9998886.577777766543 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.9e-05     0.057       4      60 ..      35     129 ..      32     157 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.9e-05
      AAA_24   4 kiliyGpsgiGKTtlakel............gpkplfidtek..Glksldadkfpdieswedfldevvel.........................a 60 
                    i+G+sg+GKT ++++l            g + ++i te+  ++k+l  +   ++ s++++ ++v                            a
  KKY18456.1  35 VTEITGESGVGKTQFLLTLllaaqlpkpqglGRSSIYISTEAplSTKRLSQILNSNL-SMTNLAEDVRPRlenvravpcgdleaqdhilefqlpaA 129
                 55699**************99999999999888999999999666666666655544.44444444433344445555555555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2337.68
//
Query:       KKY18457.1  [L=326]
Description: putative mannosylphosphate transferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-15   56.6   6.3    1.4e-06   28.6   0.0    3.1  3  LicD      LicD family
  ------ inclusion threshold ------
       0.21   11.2   0.0       0.35   10.5   0.0    1.3  1  RP-C      Replication protein C N-terminal domain


Domain annotation for each model (and alignments):
>> LicD  LicD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.4   2.6e-06     0.023       3      23 ..     111     131 ..     110     132 .. 0.91
   2 !   28.6   0.0   1.6e-10   1.4e-06      24     105 ..     149     232 ..     147     238 .. 0.85
   3 !   15.1   0.2   2.1e-06     0.019     189     226 ..     243     280 ..     238     281 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.6e-06
        LicD   3 kngleywLsgGTllGavRhgg 23 
                 + gle+w+++GTllG+ ++g 
  KKY18457.1 111 EMGLETWIAHGTLLGWWWNGQ 131
                 679***************995 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 1.6e-10
        LicD  24 fIPWDDDiDlqmprkdyerLaevfnqlilkkedlreaekdknylenf..aklldkntsiterkngngkn.........dsglyiDIfpldyvp 105
                 ++PWD DiD q   + +  +a+ +n+ +  +e+ +e     +  ++f  a+lld+n    +r+ g+g+n         ++gly+DI++l++++
  KKY18457.1 149 ILPWDWDIDTQVSGATLLYMADNLNR-TR-YEYVSE-----D--GEFtrAYLLDVNPHARQRERGDGANiidarwidtHNGLYVDITGLSELE 232
                 58************************.33.355555.....2..33334****************************************8775 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 2.1e-06
        LicD 189 rnkeilpleelsplkkvkFegvevpipnnydkyLtelY 226
                 +n + +++++l p++   Fe+v+v+ip  y k+L e+Y
  KKY18457.1 243 KNFHKYRTTDLYPMRASIFENVPVRIPFAYNKILIEEY 280
                 47899********************************9 PP

>> RP-C  Replication protein C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.9e-05      0.35      98     133 ..     163     198 ..     158     211 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.9e-05
        RP-C  98 aGliirrDspngkRyarrdreGeieeAfGfdLsPll 133
                 a l+ + D+ n  Ry + +++Ge ++A+ +d  P +
  KKY18457.1 163 ATLLYMADNLNRTRYEYVSEDGEFTRAYLLDVNPHA 198
                 7899***************************99964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.51
# Mc/sec: 1929.99
//
Query:       KKY18458.1  [L=367]
Description: putative zinc metalloproteinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-51  173.2   0.0    8.6e-51  172.7   0.0    1.2  1  WLM        WLM domain
    0.00062   19.9   0.3     0.0011   19.1   0.3    1.3  1  DUF45      Protein of unknown function DUF45
  ------ inclusion threshold ------
      0.015   15.1   0.1      0.023   14.5   0.1    1.4  1  SprT-like  SprT-like family


Domain annotation for each model (and alignments):
>> WLM  WLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.7   0.0   1.4e-54   8.6e-51       4     190 ..     156     341 ..     153     342 .. 0.96

  Alignments for each domain:
  == domain 1  score: 172.7 bits;  conditional E-value: 1.4e-54
         WLM   4 seikvlkkkpekeaalellkriakd..vqpimkkhkfkVglLtElaPkean.....lLGlNvnkGekieLrLRtdkddkeflpyesimgtllHELaHnv 95 
                 + i+ l++ p++e++ ++l+r+++d  v+++m+ hkf+V lLtE+ P+e++     +LGlN+nkGe+ieLrLRtd++ +++++y+ i++tl+HELaH+v
  KKY18458.1 156 HMIHPLPYLPNPERSTRFLERLRDDpgVRAAMRTHKFSVPLLTEMNPAEHTthdskTLGLNRNKGEVIELRLRTDAY-DGYRDYKVIRKTLCHELAHCV 253
                 5688999*******************************************99*************************.9******************** PP

         WLM  96 ygpHdakFyallkeLekeveelkakGlkegflkeGkrlggkevrnksaeeeeekealekagiagkgarlGgrse..ektrskasareliaaAaerRl 190
                  ++Hd++F++l++++ekeve++++       ++ G+rl+++e++n     + e+ + ++ g++g++ +lG+++   ++++++ s+re++a+Aa  R+
  KKY18458.1 254 WSDHDRNFWDLTNQIEKEVERADW-------KHGGNRLTSDEIYNP--DDTGEEGQFDHGGWTGGEFVLGSSEGtrPEENEGLSRREILAKAAINRM 341
                 ************************.......7************88..678888999*************9887778999**************998 PP

>> DUF45  Protein of unknown function DUF45
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.3   1.8e-07    0.0011     167     194 ..     242     269 ..     237     277 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.8e-07
       DUF45 167 dYVvvHElaHlleknHskrFwalvekll 194
                 +  ++HElaH + ++H ++Fw+l +++ 
  KKY18458.1 242 RKTLCHELAHCVWSDHDRNFWDLTNQIE 269
                 55689******************99975 PP

>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   3.9e-06     0.023      41     103 ..     217     272 ..     110     288 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.9e-06
   SprT-like  41 atvrhhasIeLsekllds.rsedrllntLaHElcHlalfvisgvrnnpHGaeFkawaakvekal 103
                 +++++  +++L +  +d  r+ + +++tL+HEl+H +    s      H+++F  + +++ek +
  KKY18458.1 217 RNKGEVIELRLRTDAYDGyRDYKVIRKTLCHELAHCVW---SD-----HDRNFWDLTNQIEKEV 272
                 35567788888888888746678899*********887...55.....8888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2388.66
//
Query:       KKY18459.1  [L=657]
Description: putative 6-phosphofructo-2-kinase 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-73  244.9   0.0    5.7e-50  169.7   0.0    2.3  2  6PF2K       6-phosphofructo-2-kinase
    8.1e-33  113.8   0.0    3.6e-25   88.8   0.0    2.5  2  His_Phos_1  Histidine phosphatase superfamily (branch 1)
     0.0049   17.0   0.0       0.19   11.9   0.0    2.5  2  AAA_33      AAA domain


Domain annotation for each model (and alignments):
>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.0   3.7e-24   2.2e-20       6      88 ..      96     186 ..      91     195 .. 0.86
   2 !  169.7   0.0   9.5e-54   5.7e-50      60     223 .]     236     402 ..     215     402 .. 0.93

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 3.7e-24
                 HHHT..S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS........---GGGGSTT-HHHHHHHHHHHHHHHHHH CS
       6PF2K   6 vtnlknsklvivlvGLpargKtyiskkltrylkwlgvrtkvFnvgkyrreaska........lsdaeffrpdneealklreklalaalkdl 88 
                 ++++   klviv+vGLpargK+yi kk+ ryl+wl ++tkvFnvg+ rr a+           +  +  +  n++  klre +++  l+ +
  KKY18459.1  96 AQRDIGAKLVIVMVGLPARGKSYIVKKIARYLNWLQHPTKVFNVGERRRVAAGRsqpaprseAKRERNSQIANSDEAKLRESVRKMSLSTI 186
                 55666789*******************************************9998999876655555667889999999999999988776 PP

  == domain 2  score: 169.7 bits;  conditional E-value: 9.5e-54
                 ---GGGGSTT-HHHHHHHHHHHHHHHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT...-EEEEEEEE--HHHHHHHHHHHHTTTSGGGTT CS
       6PF2K  60 lsdaeffrpdneealklreklalaalkdllaylneeegqvaifDAtNttrerRklilefveenn...lkvlflesicsdeeiikeNikevklsspDYkd 155
                 +++a ff+p+n++al++re++al++l++ll+y+ +++g+v+i DAtN+t erRk+i++ ++e     l+vlfles c de+++++N+++++++ pDYk+
  KKY18459.1 236 DQSATFFDPNNAKALAIREQVALETLDELLNYILNGNGSVGILDATNSTLERRKVIMDHIREVAgkdLNVLFLESQCIDENLLERNMHLKLFG-PDYKG 333
                 899*******************************************************999987777**************************.***** PP

                 S-HHHHHHHHHHHHHHHHTT-----.TTTTTTSEEEEEETTTTEEEEE---SHHHHHHHHHHTT---S- CS
       6PF2K 156 keteeaikdflkRlenyekqyepld.deedeelsyIkvidvgkslvvnnvqgylqsrivyyllNihlkp 223
                 +++++a++df+kR+++y+k+y pl   ee++++ yI++idvg++++ ++++g+l  ++v yl+N++l+p
  KKY18459.1 334 QDPQTALEDFKKRVAMYQKSYAPLGeFEEQHNMPYIQMIDVGRKVITHQIRGFLSLQTVSYLMNFNLAP 402
                 ************************945778899********************************9876 PP

>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   1.4e-08   8.6e-05       1      41 [.     405     443 ..     405     449 .. 0.87
   2 !   88.8   0.0   6.1e-29   3.6e-25      48     192 ..     489     632 ..     482     634 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.4e-08
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHT CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerla 41 
                 ++L+RHGe+e n++g+l+  +d++Lt++Gr+ A+ l +++ 
  KKY18459.1 405 IWLTRHGESEDNTTGKLG--GDSHLTAKGRRFAADLTNFVT 443
                 8*************9555..69***********99987765 PP

  == domain 2  score: 88.8 bits;  conditional E-value: 6.1e-29
                 EEE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.HHHHHH..HSHHHHHHHHH-GGG-B..S-BHHHHHHHHHHHHHHHHHHTTTSEEEE CS
  His_Phos_1  48 iysSplkRarqTaeliaealglpveldegLrEidfGdweglttaeiaeeypeeleawlrdpadvrppg..gEsledvaaRvaaaleelaarhegetvlv 144
                 +++S l+R ++Ta+ + +  + ++++ + L+Ei+ G +eg+t++ei+++ +ee+ ++++d+ ++r+pg  gEs+ dv +R+++++ e+++ ++   vl+
  KKY18459.1 489 VWTSMLRRSIETAQYFND-DDFDIKQMKMLDEINAGIFEGMTYKEIENTQNEEYVQRKKDKLQYRYPGlgGESYLDVINRLQKVIVEVERMTDH--VLI 584
                 69***************9.58*******************************************************************999975..*** PP

                 EE-HHHHHHHHHHHHT--GGGGGGB---TT-EEEEEE-SS-EEEEEEE CS
  His_Phos_1 145 VsHggvirallarllglpleelrrleldnaslsvlefdeggwrlvrln 192
                 V H  v r+lla+++glp ee+ +l+++   ++ le ++ g  ++++ 
  KKY18459.1 585 VGHRSVTRILLAYFMGLPREEVAHLDVPLGVIYMLEPKPYGVDFKAYR 632
                 *************************************99998888765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   3.1e-05      0.19       1      39 [.     105     147 ..     105     217 .. 0.64
   2 ?    2.4   0.0     0.028   1.6e+02      51      98 ..     253     301 ..     234     348 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.1e-05
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdt......lrrrlfg 39 
                 ++++vGlp+ GKs+ ++++++ l    l  +t      +rrr+++
  KKY18459.1 105 VIVMVGLPARGKSYIVKKIARYLN--WLQHPTkvfnvgERRRVAA 147
                 89****************997665..3444444444445555555 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.028
      AAA_33  51 vldrlyqilnelarkalsagrn.vildatnlsrrerarflklarrlgvp 98 
                  ++ + ++l el++  l  +++  ildatn + ++r+ ++   r+   +
  KKY18459.1 253 REQVALETLDELLNYILNGNGSvGILDATNSTLERRKVIMDHIREVAGK 301
                 55667778888888888777774699******99997555444433323 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.36s 00:00:01.16 Elapsed: 00:00:00.55
# Mc/sec: 3615.99
//
Query:       KKY18460.1  [L=422]
Description: putative nucleolar rnase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-16   59.1   0.2    2.7e-15   56.9   0.0    2.3  3  Ribonuclease_3   Ribonuclease III domain
    3.6e-12   46.6   0.0      7e-12   45.6   0.0    1.5  1  Ribonucleas_3_3  Ribonuclease-III-like
  ------ inclusion threshold ------
       0.19   11.5   0.3        1.9    8.2   0.0    2.0  2  Met_10           Met-10+ like-protein


Domain annotation for each model (and alignments):
>> Ribonuclease_3  Ribonuclease III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.3   7.7e+03      31      71 ..      31      71 ..      17      95 .. 0.62
   2 !   56.9   0.0   4.6e-19   2.7e-15       1     103 [.     123     215 ..     123     217 .. 0.86
   3 ?   -2.1   0.0         1   6.1e+03      36      68 ..     361     393 ..     358     420 .. 0.55

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.3
                    HHHHHHHHTSHHHHHHHHHCTTCHCCHCHH........... CS
  Ribonuclease_3 31 lsklrsklvsnenlarlakklglpkflrasefdpprnwlpp 71
                      +lr k  +n+ l+ +  + + +++  +s+++pp + ++p
      KKY18460.1 31 RRELREKQATNNLLSLISPSSRHNPHPHTSPSEPPPRPREP 71
                    45677777777777766655555555555555555555444 PP

  == domain 2  score: 56.9 bits;  conditional E-value: 4.6e-19
                     HHHHHHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHTSHHHHHHHHHCTTCHCCHCHH..............HHCCSTTCHCTSHHHHHHHHH CS
  Ribonuclease_3   1 erLeflGDavlklaittylfetypdahegrlsklrsklvsnenlarlakklglpkflrasefdpprnwlppgyklsddekedddadkvladvvEA 95 
                     erLef+GDa+++l++t+ l++ yp+   grl +lr +lv+ne+la++   +g++ ++   + ++  n ++    ls++    +  +k+++d++EA
      KKY18460.1 123 ERLEFIGDAYIELIATRLLWNLYPNITTGRLAQLRDQLVKNETLAEYSVHYGFDIRID--IPKIIFNDRN----LSKE----KTLTKIKGDIFEA 207
                     8***********************************************9999999998..3333333333....4444....4459********* PP

                     HHHHHHHH CS
  Ribonuclease_3  96 liGaiyld 103
                     +++ai l+
      KKY18460.1 208 YVAAIILS 215
                     *****997 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1
                     HHHTSHHHHHHHHHCTTCHCCHCHH........ CS
  Ribonuclease_3  36 sklvsnenlarlakklglpkflrasefdpprnw 68 
                     +k+  ne+ +r++++ +l + l++ +  + ++ 
      KKY18460.1 361 KKIAGNEAASRVLENETLMEELVERKRVVDEER 393
                     566777777777777777766665444333333 PP

>> Ribonucleas_3_3  Ribonuclease-III-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   1.2e-15     7e-12       2     118 ..      97     226 ..      96     235 .. 0.77

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 1.2e-15
  Ribonucleas_3_3   2 eelleqaltHkSf..angrkgh...NerLefLGdavLklsvseyllek.aekdegeltklraslvseeslaeiAkelgLgkvlrl....rkgee 85 
                      ++l + ++tH+    a+ +++h   +erLef+Gda ++l+ +++l +  ++  +g+l++lr++lv++e+lae + + g++  + +     ++ +
       KKY18460.1  97 PKLETAVFTHQGNlsAQSNRNHsisYERLEFIGDAYIELIATRLLWNLyPNITTGRLAQLRDQLVKNETLAEYSVHYGFDIRIDIpkiiFNDRN 190
                      6777888899877442233332344*******************98772566********************9999885555555555534578 PP

  Ribonucleas_3_3  86 etegsgrekvladaleAliGAiyldk...gaevaqe 118
                       ++++ ++k+ +d++eA ++Ai l+    g+++a++
       KKY18460.1 191 LSKEKTLTKIKGDIFEAYVAAIILSDpvdGFSTAET 226
                      999********************9742226666665 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00032       1.9      23      97 ..     126     200 ..     103     205 .. 0.72
   2 ?    1.0   0.1     0.049   2.9e+02      32      65 ..     376     409 ..     361     416 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00032
                 HHHHHHHHHHSS-SCEEEE-S-SBTTTTB--EE.EEEES-.SEEEEEETTEEEEEETTTS---GGGHHHHHHHHTT CS
      Met_10  23 kvigevildktkvktvlrkvsevegefRtfele.vlaGsdstetihkEngcrfklDvskvyfsskleaErerlakl 97 
                 + ig+++++    + +++ + ++++  R ++l+  l  ++++      +g  +++D+ k+ f+ ++ +  ++l k+
  KKY18460.1 126 EFIGDAYIELIATRLLWNLYPNITT-GRLAQLRdQLVKNETLAEYSVHYGFDIRIDIPKIIFNDRNLSKEKTLTKI 200
                 4699999999999999999999743.34444431344444466778899****************98888887765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.049
                 HSS-SCEEEE-S-SBTTTTB--EEEEEES-.SEE CS
      Met_10  32 ktkvktvlrkvsevegefRtfelevlaGsdstet 65 
                  t ++ +++++  v+ e  +f+++++aG+ds   
  KKY18460.1 376 ETLMEELVERKRVVDEERMKFKFKIVAGEDSGPR 409
                 33677778888888999999********996544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.55
# Mc/sec: 2319.13
//
Query:       KKY18461.1  [L=509]
Description: putative vitamin h [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-30  104.3  20.7    6.4e-30  104.3  20.7    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        0.2   11.3  11.2        1.1    8.9   3.6    3.5  4  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3  20.7   7.2e-34   6.4e-30      23     353 .]      89     438 ..      57     438 .. 0.79
   2 !    6.2   1.2   0.00047       4.2     120     176 ..     420     478 ..     410     499 .. 0.84

  Alignments for each domain:
  == domain 1  score: 104.3 bits;  conditional E-value: 7.2e-34
       MFS_1  23 laedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeerg 120
                 + ++l+++++e++++ ++y++ ++v+ +p   l  ++ +r +    +++++l l++ + a      l+++r++ G++++++fp++aa +  w+  +e g
  KKY18461.1  89 VLNELNMTADEYNWVQSIYFISYIVFEVPSNLLLKKMTPRHWQSRIVVSWGLVLACHA-AVKNKeGLYAARFFLGMMEAGMFPGIAAQLCSWYRSDEMG 186
                 4689*********************************999999999999999944444.3444558********************************* PP

       MFS_1 121 raigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllll...peepperkrkspkeee...............kgtgpap 195
                 + i ++ ++ +++ ++g +++  l+   g      W++v+++ +++++l++ ++++ l   p +p+++k+ +p+e+e               +      
  KKY18461.1 187 KPIMWMFGFQNCSGVVGSIIAYGLSYMNGlgdlsaWQWVYLLEGLFTILFGGVVYFILpdyPKSPRSNKWLTPREQEyielrltenaprthdAAF---- 281
                 ************************9888899*******************887666668888888888888888888999977666544332222.... PP

       MFS_1 196 lvp...awkallkdpvlwillialllfffgfsglltllplylqevlgls.....glllaglllallalvgailallagrlsdr.lgrrrrlllalllll 285
                   +   ++ +l+ ++  +++ ++ +l+ +g +gl   lp+   + lg++       ll+   ++++a v ai+  +ag+++ r +  r++ ++++ +++
  KKY18461.1 282 --SrkeIIASLKDPR-TYSFCLSQVLMNLGGYGLQWQLPTV-TTSLGFAslprnQ-LLNI--PPAAASVLAII--FAGWFLSRaYTTRPQFIMFICAGA 371
                 ..1343333333333.33477777777789999*******7.*******998844.5555..55555555455..999999884555556666666666 PP

       MFS_1 286 laalglallavtssavllllvlvliGfglgfvfpsllalasdla.ppeeagtasglfntagslggalgp 353
                 la+++++ ++v+  + ++++++v+ +++++++f++++a+ s ++ ++  +++ +++ + +g++gg++gp
  KKY18461.1 372 LAFFLVLCVNVS--KGAIYVACVFGTMFYSVYFIPFWAWRSASLiGTTGTAFTLAFQSCIGQVGGVVGP 438
                 666666666665..9999999999999************99888577777777777779999****998 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.00047
       MFS_1 120 graigllsagfslGailgpllggllasslgWravfyilaivsllafv..lfllllpeep 176
                 ++ +++ s   ++G ++gp l    +++ g+  +f i+a + + + +  ++ ++l+ ++
  KKY18461.1 420 AFTLAFQSCIGQVGGVVGPQLFQSKYAYNGYKTSFAICASAIAASWIanCWTWWLTSKN 478
                 678899999**********99999999************99999988799999995544 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.11   9.4e+02      27      64 ..     221     258 ..     197     281 .. 0.57
   2 ?   -0.9   0.1      0.12   1.1e+03      63      63 ..     257     257 ..     217     324 .. 0.49
   3 ?    8.9   3.6   0.00012       1.1      10      51 ..     340     382 ..     335     388 .. 0.76
   4 ?    5.2   0.1    0.0017        15       2      63 ..     402     483 ..     401     508 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.11
     DUF4131  27 rprrrvllllllllllallgfalrapqpnandlsqlle 64 
                 ++++ +ll  l+ +l++++++++  ++p + + +++l+
  KKY18461.1 221 AWQWVYLLEGLFTILFGGVVYFILPDYPKSPRSNKWLT 258
                 44444455455555555555555555555555555554 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.12
     DUF4131  63 l 63 
                 l
  KKY18461.1 257 L 257
                 2 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00012
     DUF4131  10 lalllllllllllllrr.rprrrvllllllllllallgfalra 51 
                  a++l+++++ ++l+r   +r+++++++++ +l+++l++++ +
  KKY18461.1 340 AASVLAIIFAGWFLSRAyTTRPQFIMFICAGALAFFLVLCVNV 382
                 45555555555555555799*****************999876 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.0017
     DUF4131   2 glplalvllalllllllllllllrr....................rprrrvllllllllllallgfalrapqpnandlsqll 63 
                 ++p++++  a+l+ ++ +++ l  +                     + +++ +++++ +++a+  + +++++ ++++  +++
  KKY18461.1 402 FIPFWAWRSASLIGTTGTAFTLAFQscigqvggvvgpqlfqskyaYNGYKTSFAICASAIAASWIANCWTWWLTSKNERDVM 483
                 7899********9999999998777899999999999999888873444446666666666666666666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.51
# Mc/sec: 2987.92
//
Query:       KKY18462.1  [L=494]
Description: putative xenobiotic compound family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-58  196.4   0.1    1.1e-57  195.9   0.1    1.1  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.9   0.1     6e-62   1.1e-57      12     310 ..      31     398 ..      20     402 .. 0.84

  Alignments for each domain:
  == domain 1  score: 195.9 bits;  conditional E-value: 6e-62
  Bac_luciferase  12 ggalgaasaslrylvelaraaEelGfdavwvaehhggpgga................ldaftllaalaaaTerirlgtavtplytrhPavlAqqa 90 
                     + +++++  +l+y ++la+++E+ G  a+++a+++gg ++                  d+  ++aa+aa+T+++ +g+++++ +   P+++A+ +
      KKY18462.1  31 PNDRSKTKRRLDYWINLAKLLEKGGINALFLADTYGGYDTYqdsleecirraaqwpmTDPNIPIAAMAAVTTNLAFGITASTSF-EPPFLIAKRF 124
                     4444444469**************************98888*******************************************.********** PP

  Bac_luciferase  91 atLdhlsgGRfglglgtggpaveerrfGv....dhderyarlrEfvevlrrlwrg......................eevdfeGeffsv.kgall 158
                      tLdhl++GR+g++++tg+ ++ +++ G     dhdery++++E+++vl +lw+g                      +++ ++G+++++ ++  +
      KKY18462.1 125 STLDHLTNGRVGWNIVTGWKKTAFKAIGFdnpiDHDERYRQADEYLRVLYKLWEGswsddavvedaetdtytdpdkvRKIVHHGKYYNIeARHIV 219
                     ***************************999999********************88*********************9999********9555555 PP

  Bac_luciferase 159 lprpgqgpiP.vyvaaaspaglelaarhadglllageppeeaaelierlragaaeagrdpadirvgisltvivadteeeAraea...raliagld 249
                      p p q+  P ++ a++s ag e+a +ha+++++ + +p+ ++ +i+++r  a++ grdp++i++   +t+i+++teeeA+a++   +  +a++ 
      KKY18462.1 220 DPSP-QR-TPfLFQAGTSAAGSEFASTHAEAIFVSSHDPKVLRPKIDNIRNLAKQKGRDPSSIKFFGTFTPIIGRTEEEAQAKLeeaK-KYASTI 311
                     5555.55.7*88888888******************************************************************7752.332333 PP

  Bac_luciferase 250 .......................fyaldsegagreaeaa..eiqeeedanlwagaadavpdelvaatal....vGtpeqvaerlaa.yaea 310
                                            ++a+  e+++    ++  + + e+ ++   ++ + + + ++    l    +Gtp+qva+++++ ++ea
      KKY18462.1 312 gglvlfsgwtgidiskipldqeiTAADSLELHKVTSILSafTTTSEQIPKWTPRVVAERAAIGG----LgpvgIGTPAQVADEMQRwIREA 398
                     6889*******99999988877755555555555544443222223223322333222222233....244569***********955555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.54
# Mc/sec: 2762.26
//
Query:       KKY18463.1  [L=335]
Description: putative cercosporin toxin biosynthesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-28   97.2   0.0    1.1e-27   96.7   0.0    1.2  1  Methyltransf_2   O-methyltransferase domain
    7.2e-05   22.6   0.0    0.00011   22.0   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
     0.0022   18.6   0.0     0.0039   17.8   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
     0.0027   18.4   0.0     0.0053   17.4   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
       0.13   11.8   0.0       0.23   11.0   0.0    1.3  1  Methyltransf_28  Putative S-adenosyl-L-methionine-dependent m


Domain annotation for each model (and alignments):
>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.0   3.1e-31   1.1e-27      20     205 ..     116     313 ..      98     316 .. 0.83

  Alignments for each domain:
  == domain 1  score: 96.7 bits;  conditional E-value: 3.1e-31
                     HHS--..HHHHHTSSHHHHHHHHHHHHTTHH...HHHHHHHHSS-....GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS CS
  Methyltransf_2  20 afGis..lfeaikrdeeerakfnkglqesss...lvakkvleafd....leglkslvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehl 105
                     afG     f +  + +  +++f ++++ +s+   +  ++ l +      l+   ++vDvGGG G +   i + y t +++v Dl eVv++     
      KKY18463.1 116 AFGFDgpFFGYLREKPGATKLFAEAMEFVSQpggIGNAEFLVNAPvwrtLHDKAKIVDVGGGKGFVSVDILRRYATFTGVVQDLEEVVSQCTAP- 209
                     5666666788888888888888888876654333555666655433345777789*********************************987776. PP

                     -----TTEEEEES-TTTS---..--SEEEEESSGGGS-HHHHHHHHHHHHHH--TT-EEEEEE----TTS-.--HHHHHH...HHHHHHCSS--- CS
  Methyltransf_2 106 sageeervefvgGdffkdslP..eaDaillkrvlhDwsdekcvklLkrvkkalpagGkvivveavlgadps.geletelv...dlimlvqteGke 194
                      +++ e+++f+  +f  d+ P  +aDa+ll rvlhDwsd++c+++L+++  ++++g ++i+ e v+++ +  ++ e++++   d+ m++  +Gke
      KKY18463.1 210 -TDLIEKLSFQTANFL-DPQPiqDADAYLLRRVLHDWSDQDCKRILQNIIPSMKTGSRLILSEFVVPEPGMmTSYEEKMMrtaDMQMMLLLGGKE 302
                     .67999*********9.5555449*****************************************998765145556666799************ PP

                     --HHHHHHHHH CS
  Methyltransf_2 195 Rteaeyeells 205
                     R   e++++++
      KKY18463.1 303 RGFGEWKRIFE 313
                     *******9986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   3.1e-08   0.00011       2     129 ..     166     293 ..     165     319 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 3.1e-08
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDis.eeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnala..dpd 91 
                      +++ +++D+G G+G+ +  + ++    a+++G+  + ee+++++++      ++ ++F+ +++ +  +  ++d   D  l + vl++ +  d++
       KKY18463.1 166 HDKAKIVDVGGGKGFVSVDILRR---YATFTGVVQDlEEVVSQCTAP--TDLIEKLSFQTANFLDpQP--IQD--ADAYLLRRVLHDWSdqDCK 250
                      67889***************955...689***977647888999886..55899***********777..787..**********665511667 PP

  Methyltransf_31  92 kileeiervlkpggilliedpr.....llaelpakveeeskay 129
                       il++i+  +k+g++l+++++      +++ + +k+ ++ +++
       KKY18463.1 251 RILQNIIPSMKTGSRLILSEFVvpepgMMTSYEEKMMRTADMQ 293
                      7*********************666665555656666665533 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.1e-06    0.0039       1      95 [.     172     267 ..     172     268 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.1e-06
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCT.SS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl..kvefvvadaekl.pfednsfDlvvssevlhhv..edpekalkeiaRvLk 89 
                      +dvG G+G ++ ++ +r+a+ +gv  + e +  +++++ + +l  k++f+ a++ +  p++d   D+ +++ vlh +  +d +++l++i   +k
       KKY18463.1 172 VDVGGGKGFVSVDILRRYATFTGVVQDLEEV--VSQCTAPTDLieKLSFQTANFLDPqPIQD--ADAYLLRRVLHDWsdQDCKRILQNIIPSMK 261
                      59*********************98666665..555555555568899*******9435666..*************999*********99999 PP

                      EEEEEE CS
  Methyltransf_11  90 pgGllv 95 
                       g +l+
       KKY18463.1 262 TGSRLI 267
                      998887 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.5e-06    0.0053       1      96 [.     171     263 ..     171     263 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.5e-06
                      EEEET-TTSHHHHHHHCTSTSSEEEEE..ESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgv..Diseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeia 90 
                      ++d+G G+G ++ ++++r+  a++tgv  D+  e + ++ +     +l  +++f+++++ d + + +  D+ +++ +lh +sd+d +++l++i 
       KKY18463.1 171 IVDVGGGKGFVSVDILRRY--ATFTGVvqDLE-EVVSQCTAPT---DLieKLSFQTANFLDPQ-PIQDADAYLLRRVLHDWSDQDCKRILQNII 257
                      89****************9..78888622554.4555555555...24469********9954.55679*****888*99************99 PP

                      HHEEEE CS
  Methyltransf_25  91 rvLkpg 96 
                        +k g
       KKY18463.1 258 PSMKTG 263
                      888765 PP

>> Methyltransf_28  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.5e-05      0.23       9      50 ..     161     198 ..     155     204 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.5e-05
  Methyltransf_28   9 ewqalgrpskklrliElGpGkGtLmadvLrtlrkflpefyea 50 
                      +w++l   + k +++++G+GkG    d+Lr  ++f + +++ 
       KKY18463.1 161 VWRTLH--D-KAKIVDVGGGKGFVSVDILRRYATF-TGVVQD 198
                      788883..3.478******************9999.666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.53
# Mc/sec: 1890.43
//
Query:       KKY18464.1  [L=802]
Description: hypothetical protein UCRPC4_g04933 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-69  231.4   0.0      1e-68  230.4   0.0    1.5  1  Thioredox_DsbH  Protein of unknown function, DUF255
    1.2e-06   28.6   0.0    2.5e-06   27.6   0.0    1.6  1  Thioredoxin_7   Thioredoxin-like


Domain annotation for each model (and alignments):
>> Thioredox_DsbH  Protein of unknown function, DUF255
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.4   0.0   1.1e-72     1e-68       1     162 [.      17     186 ..      17     187 .. 0.95

  Alignments for each domain:
  == domain 1  score: 230.4 bits;  conditional E-value: 1.1e-72
  Thioredox_DsbH   1 knrlaeekspYllqhaknpvdWypwgeealekakeedkpillsiGysachWChvmekesfedeevaallnesfvsvkvDreerPdldkiymeavq 95 
                     +nrlae++spY++ h++npv+W++w+e++l+ a++ d++i+lsiGysachWChvme+esf  +evaa+lnesf+++kvDre rPd+d+iym++v+
      KKY18464.1  17 TNRLAESTSPYVRGHKDNPVAWQEWNESTLNLARKLDRLIFLSIGYSACHWCHVMERESFMSPEVAAILNESFIPIKVDRESRPDIDEIYMNYVT 111
                     69********************************************************************************************* PP

  Thioredox_DsbH  96 altgsggWPlnvfltpdlkpffggtYfpkeeregr........pgflevlekiaelweeereeleeeaeelleal 162
                     a+tgsggWPlnvf+tpdl p+fggtY+p  ++++          +flev e+++++w+ +r+++ ++a+++ ++l
      KKY18464.1 112 ATTGSGGWPLNVFITPDLDPVFGGTYWPGPNSTSFprlaaaesLNFLEVSERVRDVWQMQRQKCLQSAKDISAQL 186
                     ****************************98776655555555588**************************9988 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   2.8e-10   2.5e-06       1      67 [.      37     102 ..      37     127 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 2.8e-10
                    ---SSHHHHHHHHHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG CS
  Thioredoxin_7   1 ewlsdldealakaaergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdani 67 
                    +w+ + ++ l  a++  + +++ +g s c+ C+++er+   ++ev+a+l+e f+  +vd ++r + i
     KKY18464.1  37 AWQEWNESTLNLARKLDRLIFLSIGYSACHWCHVMERESFMSPEVAAILNESFIPIKVDRESRPD-I 102
                    599999********************************7777899999************99987.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.53
# Mc/sec: 4566.75
//
Query:       KKY18465.1  [L=305]
Description: putative scp-like extracellular [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-15   58.6   0.9      1e-15   58.6   0.9    1.7  2  CAP            Cysteine-rich secretory protein family
  ------ inclusion threshold ------
      0.015   15.4   0.2      0.026   14.6   0.2    1.4  1  AAA_lid_5      Midasin AAA lid domain
       0.36   10.1   2.2        1.1    8.6   0.0    2.1  2  Stanniocalcin  Stanniocalcin family


Domain annotation for each model (and alignments):
>> CAP  Cysteine-rich secretory protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.1   6.6e+03      65      65 ..     111     111 ..      56     148 .. 0.55
   2 !   58.6   0.9   1.7e-19     1e-15       1     126 []     150     281 ..     150     281 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.1
                 S CS
         CAP  65 s 65 
                 s
  KKY18465.1 111 S 111
                 1 PP

  == domain 2  score: 58.6 bits;  conditional E-value: 1.7e-19
                 HHHHHHHHHHTT----EE-HHHHHHHHHHHHHHHHH..T---S-GGG--HHHHHHTT-TEEEEEES--CCCHHHHHHTSHH.................. CS
         CAP   1 leahNeyRaaaglppLkwdatLekaAqdhardcaash.sdsssspeggdllkyaenagkeniaaaseaaedavdsWysepgtynkgketegs.....ig 93 
                 l+ hN +R+++ +  ++w++tL++ A + a+ c ++h  d+   ++g+++ +++ +++    + + + +    +++y  p     g ++ ++     +g
  KKY18465.1 150 LNQHNIHRTNHSAVDIAWNETLAATALKIAQSCVYAHdTDTDGGGYGQNIGAGSPPSD--VGSMITNMMYNGEIGYYPLPW----GEDSPNMsnfeqWG 242
                 789******************************7777666666666666666666666..444444444444444444444....3333333567789* PP

                 HHHHHT-SS--EEEEEEEEBTTS-E........EEEEEE CS
         CAP  94 hftnllwpkstkvGcavatcgngsf......tfivvcny 126
                 hf++++w+++t++Gca ++c+   +       ++ vcny
  KKY18465.1 243 HFSQIVWKDTTSIGCATYECSTLENvssdvePYFTVCNY 281
                 ***********************99******999***99 PP

>> AAA_lid_5  Midasin AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2   4.3e-06     0.026      19     100 ..      26     110 ..      14     133 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.3e-06
   AAA_lid_5  19 alvtdvvefYlelkklaerkeltdgagq..kphfSlRtlsraLsyartilkl.aglrralyeGfsmsFltqLdsesrkkveklir 100
                   v+d+v++Y+++ + a  ++ +d +gq  + +f  R+ sr+ sy++t++++  +++    e    s  t+++++s + v+ +++
  KKY18465.1  26 VTVEDIVTVYTTVTEGAVPTNPVDVNGQyaHSQFHTRSWSRTWSYVATTATVvSSSNVEPTETSTASTETPVSTSSSAEVQVITS 110
                 5689**************999999998877899***************9988566677788888889999999999888887765 PP

>> Stanniocalcin  Stanniocalcin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.6     0.046   2.8e+02       8      42 ..      77     111 ..      70     136 .. 0.72
   2 ?    8.6   0.0   0.00018       1.1      43      71 ..     252     282 ..     246     291 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.046
  Stanniocalcin   8 lsaaagyeseqeessqrkgrlsaqntaevarClns 42 
                    + ++++ e ++ ++++  + +s++++aev+   +s
     KKY18465.1  77 VVSSSNVEPTETSTASTETPVSTSSSAEVQVITSS 111
                    44455677777778999999********9976544 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00018
  Stanniocalcin  43 aldvGCgvfaC..lenstCdidGlheiCktf 71 
                     + +GC++++C  len + d++  + +C+ +
     KKY18465.1 252 TTSIGCATYECstLENVSSDVEPYFTVCNYY 282
                    5789*******999**************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1427  (0.0795917); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 1853.93
//
Query:       KKY18466.1  [L=793]
Description: putative carnitine acetyl transferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.9e-211  703.1   0.0   4.3e-211  702.6   0.0    1.2  1  Carn_acyltransf  Choline/Carnitine o-acyltransferase


Domain annotation for each model (and alignments):
>> Carn_acyltransf  Choline/Carnitine o-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  702.6   0.0  2.4e-215  4.3e-211       1     587 []      35     687 ..      35     687 .. 0.93

  Alignments for each domain:
  == domain 1  score: 702.6 bits;  conditional E-value: 2.4e-215
                      S-------HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHSSHT-STTTHHHHHHHHTTT--S-HHHHTBEEEE-GCCC CS
  Carn_acyltransf   1 LprLPvPkLedTleryleslkpllseeelekteklveeflkgeGpkLqerLraekekktsknwledwWedyaYleyrdplvlnsnpfllleddp 94 
                      Lp+LP+P+Le+Tl++y++++ pl+s++e+e t++++++fl++eG++Lqe+L++++++  +++++e++W+d +Yl+y++++vln npf+lleddp
       KKY18466.1  35 LPKLPIPDLESTLKKYVDAVLPLQSAKEHEDTKAAAKDFLENEGKELQEKLKKYASD--KTSYIEQFWYD-SYLNYDSSVVLNLNPFFLLEDDP 125
                      9**************************************************999888..67*********.*********************** PP

                      CTSTCHHHHHHHHHHHHHHHHHHHHHHTT-S--TE.EETEE---GGGGGSSSEEEE--SSS-EEEEE--TSS---EEEEEETTEEEEEECECEC CS
  Carn_acyltransf  95 dpkeknqqlkraAklilsalkfkkllrreelepdvikkgkplcmsqykrlfnttRiPgkekDklvkykkedkesrhivVlrkgqfYkvdvledd 188
                      + +++n+q++raA+l++sal f +++r+eel+pd++ +g+plcm+qy+rlf+t+RiP+++   +     +d+es+h+vVl++gqfY++dvl+d+
       KKY18466.1 126 T-PARNDQVTRAASLVISALCFVRAVRKEELPPDTL-RGTPLCMYQYSRLFGTARIPTEN-GCMIG---QDSESKHMVVLCRGQFYWFDVLDDN 213
                      *.9999999*************************77.49******************933.33332...3667******************778 PP

                      TTEE--HHHHHHHHHHHHHHHHCCG....----GGGGGGS-HHHHHHHHHHHCC-TCH.HHHHHHHHHCSS-EEEE----SS---HCCHHHHHH CS
  Carn_acyltransf 189 ggrllspaelekqleeIlsdsekees...aeepvgvlTtenRdewakareellksekk.NkeslelIesalfvvcLDdespededeeelakqll 278
                      ++ ++s+++l+ +l+ I+ d+e+++    a+ ++gvl+tenR++w+ +r+ l ++e + N+e+l +++salfv+cLDd++p  +d ++l+ ++l
       KKY18466.1 214 NDLIMSEKDLAVNLQVIVGDAEQTPIqeaARGALGVLSTENRKVWSGLRDVLTRDEGSnNSECLAIVDSALFVLCLDDTEP--SDVSQLCGNML 305
                      889***************555555546788899******************99888778*********************7..55556****** PP

                      CT...........TCGC--TTBSEEEEE-TTS-EEEEE-STT--HHHHHHHHHHHHHCCHCTTTT--S...........----S-SSS...... CS
  Carn_acyltransf 279 hg...........sgtnRWfDKslqlivtknGkaglnfEHswaDgtvvlrlvedvltdsilkeakekn...........eekssssees..... 345
                      +g           ++tnRW+DK lq+iv+knG+ag+nfEH+++Dg++vlr+++dv+td+il++a+++n                +++++     
       KKY18466.1 306 CGtneivkgvqvgTCTNRWYDK-LQIIVCKNGSAGINFEHTGVDGHTVLRFASDVYTDTILRFARSINgqapsmwasnsP----DPSKRdpesf 394
                      *8889999999*9*********.***********************************************9999865431....2222235668 PP

                      ......-EEE-----HHHHHHHHHHHHHHHHHHCCEEEEEEEETS--HHHHCCCT--HHHHHHHHHHHHHHHHHSS---EEEEEE-TTSTT--E CS
  Carn_acyltransf 346 ...lpepeklefkldeelkeaieeaetrldklisdldlkvlefkeyGksfikkfklspDafiQmalQlAyyrlygklaatyEsastrkFrhGRt 436
                         +++p+kle+++ +el+ a+++ae+rl++li+++++++l+f +yGk+fi+ +++spDa++Qma+Q+Ayy lyg++++tyE+a+t+ F hGRt
       KKY18466.1 395 gdvSTTPHKLEWDMLPELSIALRFAEARLSDLIQQNEFYTLDFMHYGKNFITGAGFSPDAYVQMAFQAAYYGLYGRIENTYEPAMTKIFLHGRT 488
                      8898899*************************************************************************************** PP

                      EEEE---HHHHHHHHHHHSSCTHCCHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHT...--HH....................... CS
  Carn_acyltransf 437 EtirsvteeslafvkamdskasdeeklellrkAvkahskltkeaakGkGvdrHLfaLkllakel...eseg....................... 504
                      E+irsvt+es++fv+++  ++ + +k e+l++A+++h+++tke++k++G+drHL+aL++++++                               
       KKY18466.1 489 EAIRSVTPESAEFVRTFWADNPAPQKVEALKRAAQKHTTMTKECSKAQGQDRHLYALYCIWQRAmddA--Aenssttglssngfsspadgsdpg 580
                      *****************778889999************************************987542..25689999*****99999999999 PP

                      ...........................SS.-HHHHSHHHHHCT--SEEEEE...SSSEEEES--SSTT-EEEEEEEETC.EEEEEEETCTTS-- CS
  Carn_acyltransf 505 ...........................eelpelFkdplykklnnwrLsTSqlsspalkgfGfgpvvpdGyGigYiikddsisfvisskkksets 571
                                                 +++p+lF+d++++kln+++LsTS++++p+l+ fGfgpv++dG+GigYiikddsis+++ssk   +++
       KKY18466.1 581 sarrmtngsvdsmesgrsspfggkgfsRNMPDLFTDSGWDKLNTTVLSTSNCGNPSLRHFGFGPVSADGFGIGYIIKDDSISVCMSSK---HRQ 671
                      9999999999999999999999999999999********************************************************7...89* PP

                      HHHHHHHHHHHHHHHH CS
  Carn_acyltransf 572 serfaeaLeealedik 587
                      ++rf e+Le+++ +++
       KKY18466.1 672 TKRFIENLESYMLEMR 687
                      **************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      627  (0.0349713); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:00.56
# Mc/sec: 4273.63
//
Query:       KKY18467.1  [L=1244]
Description: putative jumonji family transcription [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-40  136.0   1.1    7.6e-39  132.7   0.8    2.4  2  JmjC             JmjC domain, hydroxylase
    1.5e-17   63.7   5.2    2.9e-17   62.8   5.2    1.4  1  zf-HC5HC2H_2     PHD-zinc-finger like domain
    3.7e-17   62.4   6.2    3.2e-16   59.3   4.7    2.5  2  zf-HC5HC2H       PHD-like zinc-binding domain
    1.4e-10   40.9   0.1    1.4e-10   40.9   0.1    2.4  3  JmjN             jmjN domain
  ------ inclusion threshold ------
        3.6    8.0   8.6        9.9    6.6   8.6    1.7  1  zf-RING-like     RING-like domain


Domain annotation for each model (and alignments):
>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.7   0.8   2.1e-42   7.6e-39       1     114 []     421     538 ..     421     538 .. 0.98
   2 ?    0.6   0.0       0.2   7.2e+02      24      52 ..     914     942 ..     900     969 .. 0.78

  Alignments for each domain:
  == domain 1  score: 132.7 bits;  conditional E-value: 2.1e-42
                 EEEEE-TT-EEEEE--GGG-EEEEEEEEES-EEEEEE-GGGHHHHHHHHHHH...HHCCSTTGCCTTTCEE-HHH.HHHTT---EEEEE-TT-EEEE-T CS
        JmjC   1 wlylgmpksttpwhiedqglySinylhfgapkvWyiipeekkeklekvlskk...nskeqpdllrhkstlispkq.lekegipvyrfvqkpgefVfvfp 95 
                 +lylgm+k+t++wh+ed +lySiny hfgapk+Wy+i ++++ k+ek+++     +sk ++++lrhk+ l+sp+  l   gi+v+++v+++g+f+++fp
  KKY18467.1 421 YLYLGMWKATFAWHLEDVDLYSINYIHFGAPKQWYSISQADAPKFEKAMKSLwpnDSKYCSQFLRHKTYLVSPNKlLNDYGIKVNKIVHREGQFMITFP 519
                 79*********************************************999999988899****************9999******************** PP

                 T-EEEEEESSSEEEEEEEE CS
        JmjC  96 gayHsvfnlgfniaeavnf 114
                 ++yHs+fn+g+n+ae+vnf
  KKY18467.1 520 YGYHSGFNYGYNCAESVNF 538
                 ******************9 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.2
                 EEEEEES-EEEEEE-GGGHHHHHHHHHHH CS
        JmjC  24 nylhfgapkvWyiipeekkeklekvlskk 52 
                  +++f++   Wy+ p    ++  k +s+ 
  KKY18467.1 914 KVDIFKENSLWYFLPDLSTHSRDKYCSDP 942
                 67899**************9999999876 PP

>> zf-HC5HC2H_2  PHD-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   5.2   8.2e-21   2.9e-17       2      99 ..     627     727 ..     626     746 .. 0.90

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 8.2e-21
  zf-HC5HC2H_2   2 eCvlCkkkgGa..lkktsderwvHvlCallvpevsfsnvaerepvd.vekikkerlkekCllCkkrkGaciqCskkeCktafHvtCalaaglvmele 95 
                    CvlC+++ +   l  ts+++ +H  C ++++e+ + +++ r+ v  +e+i k ++ ++C +C++++G+c+qC++ +C++a+H+tCa+ ag++++ +
    KKY18467.1 627 PCVLCPHNYDFddLILTSNGKLAHRKCSIYTTETYIVQENGRDVVYgIENIDKGKWALRCNYCRQSMGVCFQCHTPKCTRAYHATCAVMAGVQVDEA 723
                   6****9986542278899**********************9999999***********************************************999 PP

  zf-HC5HC2H_2  96 dlek 99 
                   d+++
    KKY18467.1 724 DTPR 727
                   8875 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.096   3.4e+02      22      44 ..     611     633 ..     599     637 .. 0.86
   2 !   59.3   4.7     9e-20   3.2e-16       1      89 [.     650     746 ..     650     747 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.096
  zf-HC5HC2H  22 eeiedvekikkerkklkCylCkk 44 
                  ++++v+kik +r  + C+lC +
  KKY18467.1 611 KPVKKVKKIKINRGYQPCVLCPH 633
                 6899*****************76 PP

  == domain 2  score: 59.3 bits;  conditional E-value: 9e-20
  zf-HC5HC2H   1 HvvCalwipevvfeeekeiemeeiedvekikkerkklkCylCkkkvGaciqCskkkCkkafHvtCakeagllleee..........eekeklksyCkkH 89 
                 H+ C ++++e+++ +e+      + ++e+i+k +++l+C +C++++G+c+qC+ +kC++a+H tCa  ag++++e            ++  + + Ck+H
  KKY18467.1 650 HRKCSIYTTETYIVQENG--RDVVYGIENIDKGKWALRCNYCRQSMGVCFQCHTPKCTRAYHATCAVMAGVQVDEAdtprfyegveYKDPIIDLRCKTH 746
                 99**********988775..78999************************************************98844444333322223667777777 PP

>> JmjN  jmjN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.1     4e-14   1.4e-10       1      30 [.      98     127 ..      98     131 .. 0.95
   2 ?   -2.6   1.1       1.6   5.8e+03       7      13 ..     343     349 ..     342     351 .. 0.90
   3 ?   -3.9   0.0         4   1.4e+04      16      29 ..     489     502 ..     487     502 .. 0.87

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 4e-14
                 -EE---HHHHC-HHHHHHHHHHHHCCCSEE CS
        JmjN   1 PvFyPTeeEFkdplkYiekieplgekyGIc 30 
                 PvF PT e+Fkd+ kY++ ++p+g+k+GI+
  KKY18467.1  98 PVFCPTVEQFKDFEKYMNAVNPYGMKSGIA 127
                 9****************************8 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.6
                 HHHHC-H CS
        JmjN   7 eeEFkdp 13 
                 ee+Fkd+
  KKY18467.1 343 EEDFKDF 349
                 8*****9 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 4
                 HHHHHHHHHCCCSE CS
        JmjN  16 YiekieplgekyGI 29 
                 Y+ + ++l   yGI
  KKY18467.1 489 YLVSPNKLLNDYGI 502
                 88999999999**9 PP

>> zf-RING-like  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   8.6    0.0027       9.9       1      28 [.     686     713 ..     686     717 .. 0.97

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0027
  zf-RING-like   1 CeaCkeivtqGvrCsnesCnvrlHvdCf 28 
                   C+ C++ + ++ +C + +C++++H  C+
    KKY18467.1 686 CNYCRQSMGVCFQCHTPKCTRAYHATCA 713
                   ***************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       830  (0.0462937); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.92u 0.35s 00:00:01.27 Elapsed: 00:00:00.54
# Mc/sec: 6878.01
//
Query:       KKY18468.1  [L=1520]
Description: putative nuclear pore complex subunit nup133 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   8.7e-131  437.6  12.2   1.1e-130  437.2  12.2    1.1  1  Nucleoporin_C  Non-repetitive/WGA-negative nucleoporin C-term
    1.1e-58  199.1   0.4    1.5e-58  198.6   0.4    1.2  1  Nucleoporin_N  Nup133 N terminal like


Domain annotation for each model (and alignments):
>> Nucleoporin_C  Non-repetitive/WGA-negative nucleoporin C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  437.2  12.2  1.2e-134  1.1e-130       2     595 ..     627    1269 ..     626    1270 .. 0.94

  Alignments for each domain:
  == domain 1  score: 437.2 bits;  conditional E-value: 1.2e-134
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......................XXXXXXXX................... CS
  Nucleoporin_C    2 asleqnleyrlssLeiLaeflksngeslsrdtrwellwqAEkiaaatalWklqeeflaerse.kktllnsiieli......klneeageeDaVR 88  
                      s+eqnl+ r++  ++La +l+++++ +sr  rw+llw+AEk+aa++a+Wk+++e++++r+e ++t+l++i++++      ++++++ e+D+VR
     KKY18468.1  627 PSIEQNLRTRAKTHDDLALHLSKHYNPISRPARWRLLWNAEKLAAQRAIWKTEQEHRKRRPEgEDTILQQIVRYMhpemktDIDRTKAENDRVR 720 
                     589************************************************************************999977779********** PP

                     ...........................XXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXX..................XXXX..... CS
  Nucleoporin_C   89 hwFihdvdrleiiiawaykvikdl.ksnsikealsflnvllEanevvlaaleeafefrkenaafygieeekled...........ekwtstsvi 170 
                     hw + d++rle++i+w++ +  +l k+++++ ++ + + + E  +++ a++e+af+fr++n ++yg+++e++++           ++wts    
     KKY18468.1  721 HWLTFDTNRLENFIPWLHVIHGELyKDEVTD-SKVVAENISECIDLMEAIFETAFRFRETNVSLYGLHDETFKHgmlftgytgldLPWTS--DF 811 
                     ************************7888777.****************************************999**************5..55 PP

                     ..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXX.... CS
  Nucleoporin_C  171 venlerlldLtklllkdlfapnlssiinrnisrgesieleatllqeicgslcsltdvllfraiErlrwakeqkdkklqnaikllekaydearke 264 
                      + + + +++t++ +++++ +          s+++ ++++++++++i  sl+++t++l  +++E+ +w+k++ ++++++++ l+ k + ++ ++
     KKY18468.1  812 HTFVIEFVNMTSDFARKWWVND---------SKSTAESPNPATIRKIGSSLPQQTEILSHMLLEKGQWCKARPEEEMHEEGVLIHKEHIQNSRQ 896 
                     55678999***********999.........899************************************************************ PP

                     .....XXXHHHHHHHHHHHHTSXHHHHHHHHHHHHH......HHHXSSSSXHHHH......HHHHHHHSSSXXHHHHHHHHHHHHHTTXGGGGG CS
  Nucleoporin_C  265 qilkLlsigkleeaielaekledfralvellleiankl....asdkgederkelyekaeelekrielyfekfgkaFayalYdwlisqgqqekLL 354 
                     ++l+++ +g ++eai+laekl d++ lvel ++ + +l    + +++e+e+++++++ e+ ++r++ yf++fg+++a a Y++li++gq + LL
     KKY18468.1  897 HLLSMAGLGFSNEAIALAEKLGDMEMLVELSIDAIVQLseqmQAQQTEKEAERFEREVEKANDRMDSYFNRFGDRWARAYYERLIQDGQLGSLL 990 
                     *******************************999988888776666799********************************************* PP

                     GX..XXTTHHHHHHHTXXHHHHHHTHHH.HXXSHHHHHHHHHHHHSSSSXXXHHHHHHHHHHX---HHH.......................HG CS
  Nucleoporin_C  355 dlkedtsfilpFLrekpelakllWiydv.kekdfeeAAeiLysLalskeqlvlskrieLSlakLaqLaeleesekekk.......glekkleki 440 
                     + +++++f++++Lr++++++k++Wi+d+ +e+ f +AAe+L   a+++e +++sk++eLSl+kLa La+ e++ k++k       +++ +++  
     KKY18468.1  991 NDEKNQQFLTRYLRKNAAYSKISWINDIvGEHSFSKAAETLAFVATEQEIDLWSKKVELSLSKLATLAAAESKAKSTKkeasldaKQDLHVSET 1084
                     *********************************************************************99999999899***99999999999 PP

                     GGHHHHHHHHHHHHHHHH...........................H-TT..S-HHHHHHHHHHHHHS---HHHHHHHTT............... CS
  Nucleoporin_C  441 eellevaaiQddllalilpsiegai.dekaeveLamekfgkk...lderpalrqllkdelkklLkhkildasdLidlltLidtke......... 521 
                       l+ +++ Q +l  ++++ i + + d +++++La e  gk+   ++ +pa++ ll d+l  lL+++ +++++ +d+ltL+++           
     KKY18468.1 1085 TSLISLIDLQTRLHLHVTSLIGRNVlDFSSRLDLAFEILGKNspaVKGKPAFKGLLYDGLGILLREQSMTVDQIVDVLTLMSPVGsdpdnqdki 1178
                     9*****************99965544****************999*************************************998899998888 PP

                     .........TTTT-HHHHHHHHHHT.....T---HHH........................HHHHHHHHHHHHHHH-HHHHHHHTT-TTTS-HH CS
  Nucleoporin_C  522 ..eee....dplgefelALkvlkvs.....dlrneee............ealekliWRRcvIrddWeelnetkkkedakvekklsstalvftls 592 
                       e +    + ++ef++ALk+++ +     d                  +al+k+iWRR++IrddWe+ln+t +k++++v + ++ t l+ t s
     KKY18468.1 1179 tdE-TidagVVGNEFFFALKAVEFAlpqpsD-----GnetdtldkrtkrDALQKIIWRRVMIRDDWESLNRTDNKSEQDVTDSMRGTILWTTAS 1266
                     751.245669**************8664332.....13356799999999*******************************************9 PP

                     HHH CS
  Nucleoporin_C  593 ell 595 
                     +++
     KKY18468.1 1267 QVF 1269
                     998 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.6   0.4   1.7e-62   1.5e-58       3     434 .]     117     550 ..     115     550 .. 0.88

  Alignments for each domain:
  == domain 1  score: 198.6 bits;  conditional E-value: 1.7e-62
                    -SCEEEEEE.E--HCHHHTTS--SS-EEEEEECTTTEEEEEETTEEEEEETTSSSS........EEEEEE----S---EEEEEE---SSSS-SSSC CS
  Nucleoporin_N   3 tdfykvskl.alPdelleelnhtesstkgglfpeigrawitvdnklflWnYnstassps.....tdtipydgeehtilavglLvkpkpgtfveevg 92 
                    ++ y+v +l alP++++++ +   +++   l p++g+a++++++++ +W+Yns+ s p+     t+ +p+   ++++l+++   + k++t   e+g
     KKY18468.1 117 NEYYSVAQLpALPEQIRSHSS---TKFASVLSPDNGYALALTHSHALIWPYNSPSSVPPskdtfTFELPFAISTNDPLPIA-AFTAKSATK--EPG 206
                    889****************87...89****************************998889998888888888*********.999999996..9** PP

                    EEEEECTTSEEEEECECCS--------EEEEEEEE--EETT.TTEEEEEEETTTC-EEEEETTSSEEEEEEC-SSS-CEEEEEEEEE-SSSS-... CS
  Nucleoporin_N  93 llLvvattgeivyweviysaasllstnelslfntdlsvssdgeivtqvinseptgriflagstgrlyeltyrdssgwpslkckkicltkggls.sl 187
                    l++v +  g+i+ywe+i+sa+sl  + + ++++++++++ +ge+v++v+n+ep+g ++l++s gr+++lt++d+ g+p++ +++++  ++g+  sl
     KKY18468.1 207 LVIVTPAKGKIAYWETISSASSLVPSPQAQGVQGSIPGMFSGETVSSVVNAEPAG-FVLTFSHGRVAHLTLKDQLGRPAIGVQFLRKVSTGSQsSL 301
                    ********************99977999***************************.*****************************99999999888 PP

                    .--SSS--G----GG-EEEEEEECCT...CEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHHHHHH.HHSCHTTTCGCTTT-EEEEEEES-TT. CS
  Nucleoporin_N 188 lsilpgvlsgasereeivqlridssr...rilytlsskgvirvydlsasngesslksdidirqilleaitesliasaplaskslkildispvsae. 279
                    ++ +++v++ +s r++i++  +++ +   r++ +++ + +i+ +d+  s  ++slk +++ ++ ll+a   ++  ++  +++ +++ld+++++++ 
     KKY18468.1 302 FGSIRNVFG-GSGRKSIAAAHAGKASrgqRDVMVVTGDAEIELWDTRLSV-GNSLKYQLNAKETLLDA-LKFNLPTDGTSEYHFRVLDFAVLTKGs 394
                    9********.**************999******************99555.7****************.6666667799****************7 PP

                    ................TSSCEEEEEEECSSSEEEEEEEEEEEECTTT-EEEEEEEEEEEEECCCCCSSSSS..SSBECC-CCSSETTCEEEEEEES CS
  Nucleoporin_N 280 ................essllhlvaitsngvrlylllsssssdspsalslvsvrfppkrlntysskllenk..kksklllpskiispgiflfvvfd 357
                                    +    +lv++t++g+  y++  s +s+ +     v+v+       t ++k +++    ++kl++p+    p++++fvvf+
     KKY18468.1 395 sststgqevaksngdgPETIMFLVSLTHGGQASYFIIESQISSDR-----VQVKAVH--RITCYRKPTNSDaaWQPKLVIPQ----PASTAFVVFE 479
                    777777777777776666666888888888777777655522222.....2333333..23334444444447889******....********** PP

                    --SEEEEEEEEE-TTTTSSSESEEEECCS--S.....E-EEEEE--T--T--CCCCCCSSTTCTTTTS---EEEETTTEEEE CS
  Nucleoporin_N 358 kssavvlvslpdtgilkksqlvedasflpldg.....kwediislrksfdatilpsgyenesatqykeParvalltntGvvi 434
                      +a+vl sl        ++l e+as l l+g     +++d+i++++++   +l+s  e++s    k P+ ++  + +G+v+
     KKY18468.1 480 --TATVLFSL--------AKLDESASQLLLEGgsapePFQDCIRFQEDTPFRVLSSSVEDKSIGR-KHPSVILAIQSFGIVR 550
                    ..********........4478888888888888888**************************99.**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1521  (0.0848346); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.13u 0.38s 00:00:01.50 Elapsed: 00:00:00.54
# Mc/sec: 8490.29
//
Query:       KKY18469.1  [L=144]
Description: putative stf2-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.021   15.7   0.2       0.03   15.2   0.2    1.3  1  HABP4_PAI-RBP1  Hyaluronan / mRNA binding family


Domain annotation for each model (and alignments):
>> HABP4_PAI-RBP1  Hyaluronan / mRNA binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.2   1.7e-06      0.03      17      57 ..      51      90 ..      41     131 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.7e-06
  HABP4_PAI-RBP1 17 neeKregagrgnWGtvkdeieeqeeeeaekaaekeaeeeda 57
                    ++ K+eg+g +nWG + +e+++ + + + ++  ++++  +a
      KKY18469.1 51 KKIKKEGSGGRNWGRHGEEVRDYDFKFT-NQRRRSNSSTQA 90
                    457****************988665432.223333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.48
# Mc/sec: 899.13
//
Query:       KKY18470.1  [L=301]
Description: putativelike family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-40  138.3   0.2    3.7e-40  137.9   0.2    1.1  1  NmrA             NmrA-like family
    1.2e-19   70.9   0.1    1.5e-19   70.6   0.1    1.1  1  NAD_binding_10   NAD(P)H-binding
    3.2e-09   36.6   0.0    5.3e-09   35.9   0.0    1.3  1  Epimerase        NAD dependent epimerase/dehydratase family
    2.5e-06   26.7   0.0    3.7e-06   26.1   0.0    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    0.00038   20.7   0.1    0.00057   20.1   0.1    1.3  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
     0.0013   19.2   0.8     0.0022   18.4   0.6    1.5  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
  ------ inclusion threshold ------
      0.011   14.9   0.2      0.017   14.3   0.2    1.3  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.019   14.4   0.0      0.033   13.6   0.0    1.4  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
      0.044   12.9   0.0        4.3    6.4   0.0    2.2  2  NAD_binding_4    Male sterility protein
        0.1   12.8   0.1       0.32   11.1   0.0    1.9  2  DapB_N           Dihydrodipicolinate reductase, N-terminus
       0.12   12.5   0.0       0.22   11.6   0.0    1.4  1  Fer2_4           2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.9   0.2   2.3e-43   3.7e-40       1     228 [.       6     241 ..       6     257 .. 0.90

  Alignments for each domain:
  == domain 1  score: 137.9 bits;  conditional E-value: 2.3e-43
                 EEESSTTSHHHHHHHHHHHH....HT-EEEEEES-S-SHHHHHHHHST..TEEEES-TT-HHHHHHHHTT.-SEEEE---GG......S-HHHHHHHHH CS
        NmrA   1 IlviGaTGrqGksvvrallk....aghkvralvRdtkselakslkeaG..velvkgdlddkeslvealkg.vdvvfsvtgfy......skeiedgkklv 86 
                 IlviGaTG+qG++ ++all+    +  ++ a++R+++s  a++l+++    +lvkgdldd   + + +++  d+vf++t+++      + e+++gk++v
  KKY18470.1   6 ILVIGATGKQGGAAIDALLSspntSSLEIYAVTRNVDSPSAQKLSSKSpqIKLVKGDLDDATAIFKEINQpIDAVFAMTALTmkkdasEVEVRQGKAIV 104
                 9******************998888999****************9876235689******999877776648********9999***9*********** PP

                 HHHHHHS-SEEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHC....TS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE- CS
        NmrA  87 dAakeaGvkhfiySslgddndrsnaeepavphfdsKaeieeyvral....gipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavlld 181
                 dAa++ +vkhf++ s+  + ++s+ +   vphf+sK+e+e++++a+    g+  t++++++f  n+ + +        + ++    +   g++k  ++ 
  KKY18470.1 105 DAAVANKVKHFVFTSVDRHGEKSDNDPTYVPHFASKHEVEQHLKAEahasGMTWTILRPVAFLDNLEPGFFG------KIMA--TWWYSLGDTKLQMV- 194
                 ***********************99999*****************99999*****************97777......2232..34555667778888. PP

                 HHHHHHHHHHHHHHHHHHHTTEEEEE-SEEE-HHHHHHHHHHHHTS- CS
        NmrA 182 aeeDiGafvikilkdprklkgkriklagntlsgneivelfekkigkt 228
                 +++DiG f +k+l +p++++++ i+lag++++++e+ +++ k  +++
  KKY18470.1 195 SVKDIGVFAAKALLQPDAYQNRSISLAGEEMTFEEANAVYMKLYNRP 241
                 99**********************************99999877765 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.1     9e-23   1.5e-19       1     183 [.      10     209 ..      10     210 .. 0.74

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 9e-23
                     TTTSHHHHHHHHHHHHC-...T-EEEEEETT...HHHCHHHH.CTTTCEEEE--TT-CCHHHHHH.TT-SEEEES---TCC......HHHHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellarg...ghevtalvRn...peklaele.aeeglevvegdvtdvedlaeal.kgadaVvsalggggk......deegakni 81 
                     GAtGk G ++++ ll++     +e+ a++Rn   p ++++l+ +++++++v+gd+ d+ ++ + + + +daV++ ++ + k      + ++ k+i
      KKY18470.1  10 GATGKQGGAAIDALLSSPntsSLEIYAVTRNvdsP-SAQKLSsKSPQIKLVKGDLDDATAIFKEInQPIDAVFAMTALTMKkdasevEVRQGKAI 103
                     9***************9988889999999995533.344455367************999877773689***9999544443333445555**** PP

                     HHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHH....SSSEEEEEEE-CEE-S.T--SE.EEE....ETTSS---- CS
  NAD_binding_10  82 vdaakeagvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellra....sgldwTivrpggLtde.pttky.rvv....ekgepfkgg 166
                     vdaa +++vk+fv+ s    g+++       n+ ++ + +a k++ e++l+a    sg++wTi+rp ++ d+ +++ + +++     +  + k +
      KKY18470.1 104 VDAAVANKVKHFVFTSVDRHGEKS------DNDPTYVPHFASKHEVEQHLKAeahaSGMTWTILRPVAFLDNlEPGFFgKIMatwwYSLGDTKLQ 192
                     **************9987777432......23445556778888899988887788*************99853332202223355344445566 PP

                     EEEHHHHHHHHHHHCTX CS
  NAD_binding_10 167 sisradVAdvlvavldd 183
                      +s +d+  +++++l +
      KKY18470.1 193 MVSVKDIGVFAAKALLQ 209
                     88888888888888866 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   3.3e-12   5.3e-09       1     170 [.       6     164 ..       6     168 .. 0.86

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 3.3e-12
                 EEEETTTSHHHHHHHHHHHHCT....SEEEEEES-STTTTCHHCHHC....EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg....yevigldrlssasntarledl....elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfiekn 91 
                 ilV+GatG  G a ++all+       e+ +++r+ ++   ++l  +    +lv++dl d++a+ + +++  +dav+ + a        + ++d  e  
  KKY18470.1   6 ILVIGATGKQGGAAIDALLSSPntssLEIYAVTRNVDSPSAQKLSSKspqiKLVKGDLDDATAIFKEINQ-PIDAVFAMTA-------LTMKKDASEVE 96 
                 8*******************9999988899999999888888888779999******************7.9*******44.......33344555778 PP

                 THHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEES CS
   Epimerase  92 lqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlf 170
                 ++    +++aa +++vk ++f s      +  e  k+++      ++  p  a+K+ +e+ ++a a++ g+  +ilr+ 
  KKY18470.1  97 VRQGKAIVDAAVANKVKHFVFTSV----DRHGE--KSDND-----PTYVPHFASKHEVEQHLKAEAHASGMTWTILRPV 164
                 999******************998....22222..33333.....6689999*************************96 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.3e-09   3.7e-06       1     115 [.       7     119 ..       7     146 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 2.3e-09
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlD...lrespelleelskvnvkkviegDvtdkdkleeal.egvdvvihlaslvdvagkltedeimkvnvkG 95 
                 +v+G++G  G a + +L++  +   + ++     ++sp+ ++ +sk+  +k+++gD+ d+  + + + + +d+v+ + +l++ +         +v v+ 
  KKY18470.1   7 LVIGATGKQGGAAIDALLSSPNTSSLEIYAvtrNVDSPSAQKLSSKSPQIKLVKGDLDDATAIFKEInQPIDAVFAMTALTMKKD------ASEVEVRQ 99 
                 69******************9988888887323356777777888888888********99986555167999999977665333......67899*** PP

   3Beta_HSD  96 TrnvleacvkagvrvlvYtS 115
                  + +++a+v + v+ +v+tS
  KKY18470.1 100 GKAIVDAAVANKVKHFVFTS 119
                 *******************9 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   3.5e-07   0.00057       1     109 [.       6     113 ..       6     153 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.5e-07
                      EEEE--.SHHHHHHHHHHHCTCCT-G.EEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHH CS
  Sacchrp_dh_NADP   1 vliiGa.GsvGqavaellarhfdvda.eitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppissldvlkaCiet 92 
                      +l+iGa G+ G a+++ l+ + + ++ ei  ++r+ ++  a + + ++++++ ++ d ++ +a+ +++ +  d+v  ++  +   d  +  +++
       KKY18470.1   6 ILVIGAtGKQGGAAIDALLSSPNTSSlEIYAVTRNVDSPSAQKLSSKSPQIKLVKGDLDDATAIFKEINQPIDAVFAMTALTMKKDASEVEVRQ 99 
                      89**********************99************99999999999999999999999998888777779999999999999999999999 PP

                      T-EEEESS-BCGCCSCH CS
  Sacchrp_dh_NADP  93 gvhyvdtsiskeertny 109
                      g + vd+++   +++ +
       KKY18470.1 100 GKAIVDAAV---ANKVK 113
                      999999998...33333 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.6   1.4e-06    0.0022       1     104 [.       5     114 ..       5     146 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.4e-06
                     EEEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEE..GGGGGC....TT-SEEEE-SCHHHHHHHHHHHHHT CS
  Semialdhyde_dh   1 kvaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkved..vdeeel....kevdivflalpagvskelapklaea 89 
                     ++ ++GatG  G + +  L ++p+ + + +++ +r+  ++ a++ ++ + + +l+  d    ++++    + +d vf  +   + k+  +  + +
      KKY18470.1   5 RILVIGATGKQGGAAIDALLSSPNTSSLEIYAVTRNVDSPSAQKLSSKSPQIKLVKGDldDATAIFkeinQPIDAVFAMTALTMKKDASEVEVRQ 99 
                     578***********************9999999997777777777744434444333321122222223467788887777777777777779** PP

                     TSEEEESSSTTTTST CS
  Semialdhyde_dh  90 gvkviDlssdfRlkd 104
                     g  ++D++ + ++k+
      KKY18470.1 100 GKAIVDAAVANKVKH 114
                     *******99988876 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2     1e-05     0.017       1     130 [.       6     122 ..       6     158 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1e-05
                      EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlv 93 
                      +lv Ga+G  G + ++ +l++ + +++ ++  + +     +++l+++  + k       v gd+ d++ + k ++   +d+vf   Al     +
       KKY18470.1   6 ILVIGATGKQGGAAIDALLSSpNTSSLEIYAVTRNVDSPSAQKLSSKSPQIK------LVKGDLDDATAIFKEIN-QPIDAVFAMTALT----M 88 
                      89*****************999999999999998888888888865555533......347*************9.899****999983....3 PP

                      HHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGG CS
  Polysacc_synt_2  94 eenpleaiktNvlgtenvieaaieagvkkvvliStDK 130
                           +a +  v   + +++aa++++vk++v+ S D+
       KKY18470.1  89 ---KKDASEVEVRQGKAIVDAAVANKVKHFVFTSVDR 122
                      ...445666789999*******************997 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.1e-05     0.033       1      84 [.       7      85 ..       7      96 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.1e-05
                   EEETTTSHHHHHHHHHHHHC.T-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlek.gyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAA 84
                   L+ G +G  G   ++ Ll+  +     i   + +++  + ++l +     +++++kl+kgDl D++++ + +++  +d+v+ + A
     KKY18470.1  7 LVIGATGKQGGAAIDALLSSpNTSSLEIYAVTRNVDSPSAQKLSS-----KSPQIKLVKGDLDDATAIFKEINQP-IDAVFAMTA 85
                   899***************984344444555555555555555543.....4679***********9998888876.888887776 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0095        15       3      43 ..      10      51 ..       8     114 .. 0.65
   2 ?    6.4   0.0    0.0027       4.3     177     215 ..     137     175 ..     102     196 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0095
                   -TTSHHHHHHHHHHHHHS-.T..EEEEEE-SSSHHHHHHHHHH CS
  NAD_binding_4  3 GaTGFLGkvLlekLLrttpev..kiyllvRaksgesaeeRlee 43
                   GaTG  G   +  LL++ +    +iy++ R+ ++ sa++ l +
     KKY18470.1 10 GATGKQGGAAIDALLSSPNTSslEIYAVTRNVDSPSAQK-LSS 51
                   9**************98877678*******999976665.333 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0027
                    HHHHHHHHHHHHHHHHHH---EEEEEE-EEE--SSST-- CS
  NAD_binding_4 177 eqsKalaEklvrearrrsglpvvivRpsiitgesktGwi 215
                      sK++ E+ ++++++ sg+ ++i+Rp   + + ++G +
     KKY18470.1 137 FASKHEVEQHLKAEAHASGMTWTILRPVAFLDNLEPGFF 175
                    47*************************888887777765 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0002      0.32       2      65 ..       5      67 ..       4     107 .. 0.68
   2 ?   -1.3   0.0       1.4   2.3e+03      13      43 ..     100     130 ..      95     151 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0002
                EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S-BEBSSHHHHH CS
      DapB_N  2 kvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklgvavtddleevl 65
                +++v+Ga+G+ G + ++a+ +++++     +  ++ ++++ +a +l +++++   v+ dl++++
  KKY18470.1  5 RILVIGATGKQGGAAIDALLSSPNTSSLEIYAVTR-NVDSPSAQKLSSKSPQIKLVKGDLDDAT 67
                89******************997776665555554.4455555555555555555555555544 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.4
                 HHHHHHHHHH.STTEEEEEEEETTCSTTTTTB CS
      DapB_N  13 Gkevvkavee.aedlelvaavdrkeselegkd 43 
                 Gk++v+a+ + + ++ +   vdr++ e +++d
  KKY18470.1 100 GKAIVDAAVAnKVKHFVFTSVDRHG-EKSDND 130
                 7777765444145566666667766.344444 PP

>> Fer2_4  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00014      0.22       4      39 ..      86     123 ..      83     132 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
      Fer2_4   4 vtltfDGkevtvpeGdtvasAllangvdvp..rsckyg 39 
                 +t++ D  ev+v++G+ + +A+ an v+++  +s   +
  KKY18470.1  86 LTMKKDASEVEVRQGKAIVDAAVANKVKHFvfTSVDRH 123
                 67888999******************985523555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.57u 0.35s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 1796.92
//
Query:       KKY18471.1  [L=385]
Description: putative protein dre2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-37  127.8   3.2    3.1e-37  127.1   3.2    1.4  1  CIAPIN1   Cytokine-induced anti-apoptosis inhibitor 1, Fe-S b
    1.3e-34  119.2   0.0    2.1e-34  118.6   0.0    1.3  1  DRE2_N    Fe-S cluster assembly protein DRE2 N-terminus


Domain annotation for each model (and alignments):
>> CIAPIN1  Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.1   3.2   3.5e-41   3.1e-37       4     100 .]     256     377 ..     253     377 .. 0.95

  Alignments for each domain:
  == domain 1  score: 127.1 bits;  conditional E-value: 3.5e-41
     CIAPIN1   4 kpeeCekkakkrrkackdctCGlkeleeeeekkkraaadkalekk..........................vkleeeelaevdftvegktssCgsCaLG 76 
                  p+eC++ + krr+ackdctCGl+ + e+e+++kr++ad+al++                             l +++lae+dftv gk +sCg+CaLG
  KKY18471.1 256 VPKECAP-KAKRRRACKDCTCGLAAKLEAEDRAKREKADAALAALkpnppatngfsngtngttakkngnndAMLAADDLAELDFTVPGKVGSCGNCALG 353
                 6899*98.6799*****************************9987899*********************99779************************* PP

     CIAPIN1  77 DafrCsgCPylGlPafkpGekvel 100
                 DafrC+gCPy+GlPafkpGe+v++
  KKY18471.1 354 DAFRCEGCPYIGLPAFKPGEEVRI 377
                 **********************87 PP

>> DRE2_N  Fe-S cluster assembly protein DRE2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.6   0.0   2.4e-38   2.1e-34       2     131 .]      29     161 ..      28     161 .. 0.92

  Alignments for each domain:
  == domain 1  score: 118.6 bits;  conditional E-value: 2.4e-38
                 EEEEEE-HHHHTSHHHHHHHHHHHHTTEEEEEEEHHHHHHT-----SSS--SEEEE---.....SS-S----HHHHHHHHTT--TT--EE---H..... CS
      DRE2_N   2 rtLLLapPsvathpekleaikklydsrsstdlqmlDRlaaglvsLpastYdlvllltde...eeeeeelliprkliqkivkaLkpgGklkgqdgkake. 96 
                 rtLLL+pPs++++p kl+ai++ yd r++t+lqmlDR+  g+v+Lp+stY+l+l+ltd+    +e++++ i+++++  + kaLkp+Gkl++qdg+ ++ 
  KKY18471.1  29 RTLLLSPPSLSSNPAKLSAILANYD-RTTTELQMLDRIFYGMVTLPQSTYSLILILTDAdgsRTESQKI-ISQQILDLLTKALKPDGKLQSQDGSYGAt 125
                 8************************.**********************************965555555.55**********************98889 PP

                 ...HHHHHHHHHTEEEE-SSS..EEE-XXXXXXXXXXX CS
      DRE2_N  97 ...aqkleallaGlvieeeekgelvKpeqeeeeavpLk 131
                    ++++ea+ aGl+++  + +++vKp+ + +eavpL+
  KKY18471.1 126 egsSERNEAVFAGLTVNP-SGNGFVKPAHS-NEAVPLR 161
                 999*************84.5557****886.99***97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2571.10
//
Query:       KKY18472.1  [L=480]
Description: putative arylsulfatase-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-42  146.1   1.9    2.6e-42  145.3   1.9    1.4  1  Sulfatase  Sulfatase


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   1.9   1.5e-46   2.6e-42      61     309 .]      14     307 ..       8     307 .. 0.86

  Alignments for each domain:
  == domain 1  score: 145.3 bits;  conditional E-value: 1.5e-46
                 -HHHHTHSSCCSTTT....HHCTTTS-HHHHHHHHTT-EEEEEEES-SCCSGGGSHHCCTTTSE.EEETSSSCHHTCCCCCCCCCECTCCC......TT CS
   Sulfatase  61 yphnsgvasntevgg....gglpqteatLpellkeaGYntaaigkwhlgwssrqsvyknrgfdr.flgfptgsaalkdpekseyngevlrv......pp 148
                 y ++ +++ n ++gg     +++ +e +Lp +l++aGYnt++ gk  + ++         ++d+ + ++ t+s+ l dp +++y ++++++      ++
  KKY18472.1  14 YFTR-HYYVNPPYGGypkfISQGYNEKYLPVWLQNAGYNTYYTGKLFNVHT-------VENYDKpYPAGFTASDFLLDPFTYDYLNSTFQRnkeepkSY 104
                 5555.558888899999999************************9999988.......67789989999999*************9999999******* PP

                 TTCSHHHHHHHHHHHHH.HCCC.TSSEEEEEEE-TTSS..........................STCTCGGHTCCGSTTTTCCCCCCH........... CS
   Sulfatase 149 eggysddrlldealefl.larn.dkpfflylatlapHa..........................ppeapdeyakkyatffddgseaar........... 208
                 eg+y +d+l+++a ++l  a + +kpffl++a++apH+                                                             
  KKY18472.1 105 EGEYITDVLAQKAYGLLdEAVQaKKPFFLTIAPSAPHSnvymngtgldknpkfsfgapipverhK----------------------Hlfqnvkvprta 181
                 ******************77777**************9666666655555555555555444442......................044444444444 PP

                 ............................HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEE CS
   Sulfatase 209 ............................qlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllv 279
                                               ++++l+++  +D+l++ +l +L e +ll nt+++f SD+g+++  ++++l++gk+ + ye+++++Pl+v
  KKY18472.1 182 nfnpdepsganwvrnlpqqnetvvayndYFYRSRLQALQPIDELVDGILTRLSEYNLLSNTYIFFSSDNGYHI--GQHRLQPGKS-CGYEEDINIPLIV 277
                 5555555555588899999999999*99*********************************************..89********.************* PP

                 EETTTSHCEEECSEEEGGGHHHHHHHHTTE CS
   Sulfatase 280 wwpgekaprvseelvshiDlfptildlagi 309
                 ++pg  ++ + + +++h Dl+pt+++++gi
  KKY18472.1 278 RGPGVGENMKTDLVTTHTDLAPTFFQVLGI 307
                 **************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3275.22
//
Query:       KKY18473.1  [L=1434]
Description: putative tmem1 family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-23   82.4   0.0    5.6e-23   81.4   0.0    1.5  1  TRAPPC10     Trafficking protein particle complex subunit 10,
    0.00074   19.2   0.1     0.0016   18.1   0.1    1.5  1  Foie-gras_1  Foie gras liver health family 1


Domain annotation for each model (and alignments):
>> TRAPPC10  Trafficking protein particle complex subunit 10, TRAPPC10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0   6.2e-27   5.6e-23      26     156 .]    1243    1398 ..    1207    1398 .. 0.85

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 6.2e-27
    TRAPPC10   26 k.................psaeeslrvgqpislelvittsrrwesedeeeadenettklmYevvdnsdtWlvgGkkrgdfsvpvkegeshtvqleli 105 
                  +                 ps++  + vgqp+++el+++ +++w+s+ +  ++ +  ++l+Yev+++ dtW+vgG+krg++s     +++h+v+l l+
  KKY18473.1 1243 QlptppavvtaslqpvglPSNTSPIGVGQPLPAELSMSFTQKWSSTVN--SPLESPIELSYEVATSLDTWIVGGRKRGNISS--LPDQEHKVPLLLL 1335
                  03333333334466777788899***********************55..5789****************************..99*********** PP

    TRAPPC10  106 pLkaGeLllPkVevkkllph............skqkgaamprsqelpsgevdnsnggeqvlVl 156 
                  p++ G+LllP +evk +++              +  +   ++++  + +evd ++++++vlV+
  KKY18473.1 1336 PQRPGHLLLPIIEVKCFQTDhnssigspdhrnFSPGSFGLVHKRTEIDCEVDCKTYAKSVLVI 1398
                  *****************98799****99987644445556778889****************7 PP

>> Foie-gras_1  Foie gras liver health family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   1.8e-07    0.0016     163     258 ..     637     736 ..     630     737 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.8e-07
  Foie-gras_1 163 vahskliidlLekaleeFskrkq.....tRlaeelsleiAeeylrlgdwkkalellqpltlsyrkegWwsLleevlwalrecalkvqdvkdvlavdle 255
                  v ++   +dl+e+ + ++  r+       + ae++  +iA   +r  d++ a +l++ l + y++ +W sL   +l    +c ++++  +++l++ ++
   KKY18473.1 637 VSDQDHFLDLFEALTDQAY-RHYvagnrLKSAESMVADIALQKYRKCDFETAANLFRRLSTFYASGSWSSLSGTLLELYANCLKQMDRIEEYLNILIQ 733
                  5556666666665555554.22224522566677777**********************************************************999 PP

  Foie-gras_1 256 Lls 258
                  Lls
   KKY18473.1 734 LLS 736
                  986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.50
# Mc/sec: 8549.87
//
Query:       KKY18529.1  [L=302]
Description: putative alpha beta [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-16   60.2   1.9    5.4e-16   59.9   1.9    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
      1e-14   54.8   0.2    7.5e-09   35.6   0.1    2.7  2  Abhydrolase_1  alpha/beta hydrolase fold
    7.3e-08   32.0   0.0    1.2e-07   31.2   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
       0.12   12.2   0.1       0.25   11.2   0.0    1.5  2  Ser_hydrolase  Serine hydrolase
       0.17   11.4   0.0        0.3   10.6   0.0    1.5  1  LIDHydrolase   Lipid-droplet associated hydrolase


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   1.9   1.5e-19   5.4e-16       1     218 [.      35     287 ..      35     290 .. 0.56

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 1.5e-19
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-.......GGCS--HHHCHHHHHHHCCTT..........TTSEEEEEETCHHHHHHH CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhGrs.......dpppldledladlaalldelaa........gggpvvlvGHSlGGalala 81 
                    ++++HG++ s+ +W+   La  l+ ++  +++D pG+G s       d +++d  d +d + +l+++a+         + p+++v H+ GG+++l+
     KKY18529.1  35 LVFIHGTPWSSVVWR--DLATSLSTRFNAYVYDHPGFGISpplrrlvDAADHDKVD-LDASLVLRAEASaalfkywdLASPPHVVSHDNGGLVSLR 127
                    79****995555554..999999***999*********331222222222233333.3334455555557888899999999**********9999 PP

                    ..HHHCC.........EEEEES-..----TTT.S----TTHHHHHHTT-CCCCHCCH.......S-HSCCCCHHHCCCCHCHCCCGHHHHCC.... CS
  Abhydrolase_6  82 ..aapla.......lvvgvlldppptalpagl.laaalelllallallrllawlsre.......plprlfladedadaawrarlarlaalla.... 156
                      + +         lv +v++ p   ++ + + l a  e +  ++++  + ++++++       +lp+++ +        +++la++ +       
     KKY18529.1 128 llLEH-GlkfaslcLVDAVAIGP---FGLPFFkLVAENENVFSAIPPHFFEGFVRAYvksasykSLPKEIED-----ILCAPWLAGGMQGSEkflk 214
                    64333.24544433444455555...2222223222222222222211111222111222222223333333.....4444444444433332112 PP

                    ..........HHCHTTCCHHTT-TTGCEEECTT-CHHH.HCHHCCCH.STTEEETCE...SSS-HHHHSHHHHH CS
  Abhydrolase_6 157 ..........glgllpaaawadlpvpllvlggeDplvp.rllerlla.qagarlpvvlpgaGHlphleepdeva 218
                              g+ ++ +a++ dl ++ +++g++D+++p +++erl   ++ +++  +++ +GHl++ ++p ++a
     KKY18529.1 215 emvqahyrntGVLEHEYARVGDLSPTKIIWGKDDAWIPvETAERLKKaLNAEQV-AIIEETGHLVQYDQPGRLA 287
                    2221111112444566888888888886645777788846666666699*****.************9*98887 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.1   2.1e-12   7.5e-09       1     133 [.      33     178 ..      33     185 .. 0.79
   2 !   16.2   0.0   1.8e-06    0.0065     210     256 ..     237     282 ..     206     283 .. 0.81

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 2.1e-12
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB..CHHSHHHHHHHHH.HH..HHHC.....TTSSEEEEEETHHHHHH CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacin.ddygtasvaddld.ri..ldal.....gddkltlvGhSmGGmia 87 
                    p+lv++hG p ss vw+   la  L+  +f  +++D++G+g S+p  + ++  d   +++ ++l  r+   +al        ++++v h+ GG+++
     KKY18529.1  33 PPLVFIHGTPWSSVVWRD--LATSLST-RFNAYVYDHPGFGISPPLRRLVDaADHDKVDLDASLVlRAeaSAALfkywdLASPPHVVSHDNGGLVS 125
                    89****************..*****98.********************99994455555555555533233333111212367789********** PP

                    HHHHHHHGGGEEEEEEESE.......CSSCCHHHHHHHHHHHHHHCHHCHHHH CS
  Abhydrolase_1  88 layaaeyperVkalvllga.......idpaaslieaqrqqaksfpdffdgyaa 133
                    l +++e+  + ++l l++a       ++ +    e +    + +p ff+g++ 
     KKY18529.1 126 LRLLLEHGLKFASLCLVDAvaigpfgLPFFKLVAENENVFSAIPPHFFEGFVR 178
                    *******************9988887777777777788888888888888876 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.8e-06
                    HHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHHS CS
  Abhydrolase_1 210 vlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafleg 256
                      +pt +i+g +D  +p +  e+l+++l+ +++ +i+ +gHl++++ 
     KKY18529.1 237 L-SPTKIIWGKDDAWIPVETAERLKKALNAEQVAIIEETGHLVQYDQ 282
                    2.3****************************************9986 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   3.4e-11   1.2e-07       7     235 ..      35     279 ..      33     283 .. 0.77

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 3.4e-11
  Hydrolase_4   7 vvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafv....ekvkeehpel........plfllGhSmGGliall 92 
                  +v++HG   +s    +la  L  + f+ y +Dh G+G s++ r  v+  d+   Dl+a +    e     +  l        p  ++ h  GGl++l+
   KKY18529.1  35 LVFIHGTPWSSVVWRDLATSLSTR-FNAYVYDHPGFGISPPLRRLVDAADHDKVDLDASLvlraE----ASAALfkywdlasPPHVVSHDNGGLVSLR 127
                  699******************987.***************9999999999888888887633431....222224445667999************** PP

  Hydrolase_4  93 yllrypdkvaglilsaPalkikakl...k.appllklllkllgkllpklqvsnnlkadslsrdpevvaayeadplv..hgkitvrlllelldamkr.. 182
                  +ll++  k+a l l+ ++   +  l   k + +  ++++ +  +++  +   + +k++s  + p++++ +   p++  + + + ++l e+++a  r  
   KKY18529.1 128 LLLEHGLKFASLCLVDAVAIGPFGLpffKlVAENENVFSAIPPHFFEGFV-RAYVKSASYKSLPKEIEDILCAPWLagGMQGSEKFLKEMVQAHYRnt 224
                  **********9999987765555552233333333345566666665555.5999***************9999994333457789999998876522 PP

  Hydrolase_4 183 ..leeraakit..lPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHell 235
                    le++ a++    P+ ++ G++D  ++ e +++l ++l++   +++++++  H + 
   KKY18529.1 225 gvLEHEYARVGdlSPTKIIWGKDDAWIPVETAERLKKALNA--EQVAIIEETGHLVQ 279
                  21344444444999**********************99996..78888888888765 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       2.2     8e+03      56      86 ..     112     141 ..     100     147 .. 0.67
   2 ?   11.2   0.0   6.9e-05      0.25     116     155 ..     239     279 ..     208     289 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.2
                    TEEEEEETCHHHHHHHHHHHTTSSSEEEEEE CS
  Ser_hydrolase  56 kvvlvAHSlgclavlhaaelqlakkvagalL 86 
                    +  +v+H  g l++l+++ l++  k a   L
     KKY18529.1 112 PPHVVSHDNGGLVSLRLL-LEHGLKFASLCL 141
                    447888888888888877.555555555555 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 6.9e-05
                    HCEEEEETTBTTC-HHHHHHHHHHCT-EEE.EETT-TTSSG CS
  Ser_hydrolase 116 pslvvaSenDpyvsfeeaeelaeawgaelv.dlgeaGHina 155
                    p+ ++  ++D ++++e ae+l +a++ae v  ++e+GH+ +
     KKY18529.1 239 PTKIIWGKDDAWIPVETAERLKKALNAEQVaIIEETGHLVQ 279
                    678999*********************866157899**965 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   8.3e-05       0.3     226     258 ..     240     272 ..     152     277 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.3e-05
  LIDHydrolase 226 lvfyfgkkDhWvpeetrdelkellgeeklevde 258
                    ++++gk+D W p+et++ lk+ l++e++ + e
    KKY18529.1 240 TKIIWGKDDAWIPVETAERLKKALNAEQVAIIE 272
                   57899*******************998887744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 1943.70
//
Query:       KKY18530.1  [L=375]
Description: putative b-mannanase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-13   50.5   1.8    2.9e-13   49.9   1.8    1.2  1  Cellulase        Cellulase (glycosyl hydrolase family 5)
    0.00036   20.3   0.1    0.00059   19.6   0.1    1.3  1  DUF4038          Protein of unknown function (DUF4038)
     0.0032   16.6   0.1     0.0057   15.8   0.1    1.4  1  Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel dom


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   1.8   4.9e-17   2.9e-13       4     263 ..      35     314 ..      32     331 .. 0.76

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 4.9e-17
                 TSEEEEGEEECETTSCGG....SHHHHHHHHHHHT-SEEEEEEECTGGTTSSTTT................GCTHHHHHHHHHHHHHHHHTT-EEEEEE CS
   Cellulase   4 sgkpvnlkglstswgnpy....ttkalidevkdagfntvRlpvswgelvenapdy................kvdenslerveevvkyakenglyvildi 82 
                 +g+ + ++g++++w ++     + ++ ++e+++   ++vR+    ++ v++++++                ++++n + r++ vv+ a++  +  +l +
  KKY18530.1  35 NGTVTYFAGTNAWWLGHLtedaDVDTAMSEIAASQEKVVRVWGFGNSNVNDTSSVyyqlinetlpglhteiNYGSNGIGRLDSVVASAEKYSIGLVLPM 133
                 566677899999997776667788999999***********9885555543333356656555666777788999********************9999 PP

                 ESSTTT..............CSSSSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTTSSE CS
   Cellulase  83 Hseegw..............ltkadgnssedtaeeffkklwtqiAerykkndevvifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgpnrl 167
                  ++  w              +++ ++++++d a++ +k++++ i +ry+++  v ++el+NEP++++        ++  + ++a  + + I++ +++++
  KKY18530.1 134 LNN--WddlggintycavfgCNETTFYTNTD-AQAAYKNYVKFIVQRYQSSTAVFAWELCNEPRCHGC-------NSSVIYEWASDISEYIKSLDSSHM 222
                 996..65556667778888566665555555.58999***********99999************544.......5678******************** PP

                 EEEECHHHHT............BHHHHHCT..SGSSSSTTEEEEEEEET.TTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTSS CS
   Cellulase 168 iivegnswsg............nldgavln..dPndsqdnliysvHfYg.psdfaqtefgkdltdktnlaqrledaakylvekgipviigEfGgsnadg 251
                 + ++ ++w               +d  +ln   P         ++H Y+  + ++          +++   ++ d+ +  +  g+p++++EfG+ ++  
  KKY18530.1 223 VALGDEGWLCsggdgyayscgeGVDF-ALNleIP----TLDYGTFHLYPdTWGYN----------ESWGNTWILDHDAVGKASGKPIVLEEFGALQNM- 305
                 *****996554455555554433333.3335688....446789*****455554..........45669999999999**************85433. PP

                 HHHHHHHHHHHH CS
   Cellulase 252 dlakeeaekwld 263
                    + ++++w +
  KKY18530.1 306 ---TYYESQWQE 314
                 ...466666633 PP

>> DUF4038  Protein of unknown function (DUF4038)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   9.9e-08   0.00059      16     175 ..      40     224 ..      28     252 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 9.9e-08
                 -EEEEE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-...SSSS-B-TTS-BS-SST......-S-T..HHHHHHHHHHHHHHT..T-EEEEESS-. CS
     DUF4038  16 fwlgDTaWelfhrltreeaekYlddRaeqGFnviqavvlaeldglkapnaygekplidn.dltk.pnea..Yfdhvdkivelaaek..gllialvptw. 107
                 ++ g  aW l h  ++ ++++ +++ a+    v+ +  + + +  +++ +y ++  +    l++ +n       ++d++v+ a+++  gl++ ++  w 
  KKY18530.1  40 YFAGTNAWWLGHLTEDADVDTAMSEIAASQEKVVRVWGFGNSNVNDTSSVYYQLINETLpGLHTeINYGsnGIGRLDSVVASAEKYsiGLVLPMLNNWd 138
                 555556666666666666666666666666666666666555544444444433322222111122211113457899999999884467777888896 PP

                 .......HHHHHTT..............SS-HHHHHHHHHHHHHHHTT-S..EEEEEECCC-TT.......HHHHHHHHHHHHHH--SS-EE CS
     DUF4038 108 .......gdkvkegw.........gpenifnaekakeygkylvaRYkalp..iiWllggDrdgee......revwkaiaegikeldpyalit 175
                                           +n+  +  +k+y+k++v+RY++ +    W l+ + +++       +e  + i e+ik+ld++++++
  KKY18530.1 139 dlggintY------CavfgcnettFYTNTDAQAAYKNYVKFIVQRYQSSTavFAWELCNEPRCHGcnssviYEWASDISEYIKSLDSSHMVA 224
                 66655442......02333332324666667778899***********99655699**9999999998888777889999999999999876 PP

>> Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   9.6e-07    0.0057     101     163 ..     158     228 ..     134     353 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9.6e-07
                      TTSGGGHHHHHHHHHHHHHHHTT-TTEEEEEEEESS.CHHHHHH.......HHHHHHHHH-TTSEEEEETC CS
  Glyco_hydro_2_C 101 adnpewlkavldrieelverdkNHpsviiWSlgNEs.gagedik.......alaelikklDptRlvhyegv 163
                        n + ++a+ + ++ +v+r +   +v  W l NE+ ++g++ +       +++e+ik+lD + +v   ++
       KKY18530.1 158 YTNTDAQAAYKNYVKFIVQRYQSSTAVFAWELCNEPrCHGCNSSviyewasDISEYIKSLDSSHMVALGDE 228
                      46778899999**************************6776655111111156678999999999987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 2315.94
//
Query:       KKY18531.1  [L=911]
Description: putative atp-dependent rrna helicase spb4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-32  111.7   0.0      2e-31  109.1   0.0    2.5  2  DEAD             DEAD/DEAH box helicase
    7.1e-24   83.8   0.1    1.9e-23   82.4   0.1    1.8  1  DUF4217          Domain of unknown function (DUF4217)
    1.4e-20   73.7   0.0    4.1e-20   72.2   0.0    1.9  1  Helicase_C       Helicase conserved C-terminal domain
    6.5e-11   42.1   0.0    1.2e-09   37.9   0.0    2.2  2  adh_short        short chain dehydrogenase
    2.9e-07   30.6   0.0    1.1e-06   28.7   0.0    1.9  2  KR               KR domain
    0.00045   20.2   0.2      0.005   16.9   0.0    2.6  3  ResIII           Type III restriction enzyme, res subunit
     0.0025   17.0   0.0     0.0045   16.2   0.0    1.4  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
  ------ inclusion threshold ------
      0.037   13.6   0.0      0.079   12.5   0.0    1.5  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
      0.049   13.9   2.0      0.052   13.8   0.0    2.1  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.052   14.3   0.1         17    6.3   0.0    2.6  2  GARS_N           Phosphoribosylglycinamide synthetase, N doma
       0.13   12.5   1.2       0.85    9.9   0.3    2.8  1  AAA_22           AAA domain
       0.41   10.1   6.3        7.4    6.0   4.4    2.2  2  MIF4G_like_2     MIF4G like


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   0.0   1.4e-34     2e-31      14     175 ..       3     190 ..       1     191 [. 0.81
   2 ?   -2.7   0.0       2.8   4.2e+03      24      36 ..     608     620 ..     593     691 .. 0.49

  Alignments for each domain:
  == domain 1  score: 109.1 bits;  conditional E-value: 1.4e-34
                 TCEEEEEESTTSSHHHHHHHHHHHHHHHS...TTSTS-EEEEEESSHHHHHHHHHHHHHHTT........TST...................SEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxx...................xxxxxxx RF
        DEAD  14 ggdvlvaaeTGsGKTlaflipvlqivyet...kgktgpkalivePtreLaeqtlnnlkkfkk........yid...................lrvllii 82 
                  +dv+v+a TGsGKTlaflipvl+++++    ++k++   ++++PtreLa q+++ +k+++         + d                   +  +l++
  KKY18531.1   3 YKDVVVEAVTGSGKTLAFLIPVLERLLRLdepTKKHHVGGIVLAPTRELASQIYDVAKTILVfhgpskaaF-DlldgsgestaevypknttkVIPQLLL 100
                 58************************999999899999**********************99555555540.155566666666767666553333556 PP

                 TT..SSHHHHHHHHHTTCSEEEEEHHHHHHHHHCTSSH..CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  83 gg..vaardqlskldngvdivvgtpgrlddllstgkln..lsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 gg  +aa+d  + l+ +++++++tpgrl+++ls+ +++   s++++lVlDEadrlld+gf++++++il+ l       ++qr++ ++SA +++ v++
  KKY18531.1 101 GGstTAAQDLSQFLRTSPNLLISTPGRLLEILSSPHVHcpQSSFEVLVLDEADRLLDMGFKEDLQKILKLL-------PKQRRTGLFSASVSEAVDQ 190
                 64224556666667777***************88887733666677*************************.......78999*******9988876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.8
                 TSSHHHHHHHHHH CS
                 xxxxxxxxxxxxx RF
        DEAD  24 GsGKTlaflipvl 36 
                 G GK  + ++++ 
  KKY18531.1 608 GIGKAFVKSLAIN 620
                 5555555555544 PP

>> DUF4217  Domain of unknown function (DUF4217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.1   1.3e-26   1.9e-23       2      61 .]     394     453 ..     393     453 .. 0.98

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 1.3e-26
     DUF4217   2 qqkleslcakdrdlkelAqkAfvsyvraYsvhlakeiFrvkkLdlealAksfGLleaPki 61 
                 +qkl++++ +dr+l+++AqkAfvs+vr+Ys+h+a++iFr+++Ld+++lA+ ++Ll++Pk+
  KKY18531.1 394 TQKLRAMVREDRALHDKAQKAFVSWVRSYSKHQASSIFRMDDLDWDDLARGWALLRLPKM 453
                 79*********************************************************9 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.0   2.8e-23   4.1e-20       2     111 .]     233     347 ..     232     347 .. 0.88

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 2.8e-23
                 HHHHHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHT......TSTEEEESTTSTHHHHHHHHHHHHTTSSS.EEEESGGGTSSSTSTTESEEEESS CS
  Helicase_C   2 kleallell.kleeeggkilifvntidrlekvklllekk......gikvavlhgelpqnereeileqfnkgesd.vLiatdvaerGidipkvnlVinfd 92 
                 k+ al +l+ +le    k+++++ t+  ++ ++ l          g++ ++lhg+ p+n r++ +++f +  s  vL++tdva+rG+d+p+v+lV+++d
  KKY18531.1 233 KIPALAKLIrDLEPTPAKTIVYLSTCAAVDYFQHL---MpsvlpdGVSLVPLHGKHPSNVRQKNFARFINAASPvVLLTTDVAARGLDVPSVDLVVQID 328
                 56677777778899999**********99653333...2445677***********************9888888************************ PP

                 SSSSHHHHHHHHTTSSSTT CS
  Helicase_C  93 lprnvtsyiqriGRtgRag 111
                 +p +++ + +r GR+gRag
  KKY18531.1 329 PPSDPKVFLHRCGRAGRAG 347
                 *****************97 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   7.9e-13   1.2e-09       2     134 ..     599     735 ..     598     745 .. 0.88
   2 ?    1.5   0.0      0.12   1.7e+02     160     189 ..     771     801 ..     761     805 .. 0.76

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 7.9e-13
                 EEEEESTTSHHHHHHHHHHH..HTT-EEEEEESCHHHHHHHHHHHHHT..TSEEEEEE-.TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGG CS
   adh_short   2 vvlvtGassGIGraiakela..keGakvvvvdrseekleevakelkee..gakalaiqv.DvtdreevealvekavkklgkldvLvnNAGitgsgpfse 95 
                 v++v+G+++GIG+a++k la  ++  k+++v+r+e+ l  +++el ++  + ++++i++ D++  +ev+a+ +k++++ +k+d+L++  G   s    +
  KKY18531.1 599 VAVVVGGTGGIGKAFVKSLAinTNSPKIYIVGRNEQVLDSLKTELTSLnsSGTYIPIPCrDLSLIKEVDAVSRKIKSQEEKIDILYQSQGYV-SFGKRD 696
                 79***************9984456679999*****************98777788888779******************************4.444456 PP

                 CSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEE CS
   adh_short  96 lseeewervievNltgvflltravlpamlkqssGrIvnv 134
                  +ee  +++ +v + g +  +  +l+++ ++ s r++ v
  KKY18531.1 697 ENEEGLDKLASVRYYGKIRFILNFLDQLEAAPSPRVIIV 735
                 67777***********************99999999987 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.12
                 HHHHHHHHGGGT.EEEEEEEESSBSSHHHHH CS
   adh_short 160 trslakelaptg.irvnavaPGlvdTdmake 189
                 t sl k ++++  i+ + ++PG+++Td+ k+
  KKY18531.1 771 TLSLEKLHQKHPkISFVHLYPGITKTDLFKT 801
                 4555555555546**************9876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.9   5.8e+03      98     140 ..     219     261 ..     185     262 .. 0.77
   2 !   28.7   0.0   7.3e-10   1.1e-06       4      91 ..     601     689 ..     599     709 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.9
                 TT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHH CS
          KR  98 eemtaedleqvlapKvkGawnLhelledesldffvlfSSiagl 140
                 ++++++ +++  + K+ ++  L + le+++ + +v++S +a++
  KKY18531.1 219 ASLQMKYMTTPASYKIPALAKLIRDLEPTPAKTIVYLSTCAAV 261
                 5566667777778888888888888888999999999988875 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 7.3e-10
                 EEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---- CS
          KR   4 litGGlGgLGlelarwlaekg.arhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgv 91 
                 +++GG+Gg+G+++++ la +    ++ +++R++++ ++ k+++++l+++g+ + +   D+s  ++v a+ ++ik++e++i   +++ g 
  KKY18531.1 601 VVVGGTGGIGKAFVKSLAINTnSPKIYIVGRNEQVLDSLKTELTSLNSSGTYIPIPCRDLSLIKEVDAVSRKIKSQEEKIDILYQSQGY 689
                 89****************877689****************************************************9999877776665 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.3e-06     0.005      26     162 ..       5     176 ..       2     184 .. 0.70
   2 ?   -2.3   1.4       2.5   3.7e+03      64      85 ..     530     553 ..     491     603 .. 0.62
   3 ?   -2.2   0.0       2.4   3.5e+03      35      85 ..     609     662 ..     600     699 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.3e-06
                 EEEEEESTTSTHHHHH.HHHHHHH-S...........-EEEEESSHHHHHHHHHHG........................GGGTGG.....GEEEESSS CS
      ResIII  26 rglikmaTGtGKTlva.aklierllkkgkee......kflflvprkslleqtleef........................kkflseayke.igkkvsgd 92 
                  +++++ TG+GKTl   + + erll+  +e         ++l+p+++l +q ++                          ++++++++++ i       
  KKY18531.1   5 DVVVEAVTGSGKTLAFlIPVLERLLRL-DEPtkkhhvGGIVLAPTRELASQIYDVAktilvfhgpskaafdlldgsgestAEVYPKNTTKvI------- 95 
                 6789999*******9977777777764.33346776677**************655444555555555556655555554333333333342....... PP

                 -B--.....................-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---SEE CS
      ResIII  93 kkka..............kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak...kswreilekfkeavl 162
                    +              ++  +t+ ++l++t  +l +++   ++ + +  +++f+v++ DEa rl ++   +  ++il+ ++++ +
  KKY18531.1  96 ---PqlllggsttaaqdlSQFLRTSPNLLISTPGRLLEIL---SSPHVHCPQSSFEVLVLDEADRLLDMgfkEDLQKILKLLPKQRR 176
                 ...0333333333355544667888899999999999999...88999999***************999776688999888877655 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.5
                 HHHHHHHHHHGGGGTGG......G CS
      ResIII  64 kslleqtleefkkflseayke..i 85 
                 k+l  +  e+f+k+++e++++  +
  KKY18531.1 530 KKLARRENERFTKMTEEERQAeeQ 553
                 344444445555555555443221 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.4
                 STHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG............G CS
      ResIII  35 tGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke........i 85 
                  GK +v   +i     + +  k+ ++  ++++l+ +++e++++ s+ +           
  KKY18531.1 609 IGKAFVKSLAI-----NTNSPKIYIVGRNEQVLDSLKTELTSLNSSGTYIpipcrdlsL 662
                 55555544444.....4444478888888999999999988877776655565555442 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     3e-06    0.0045       2      48 ..     601     648 ..     600     687 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3e-06
                      EEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH...... CS
  Polysacc_synt_2   2 lvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelk 48 
                      +v G++G iG+++v+ ++ + +  ki+++ r+E+ l+++++el++  +
       KKY18531.1 601 VVVGGTGGIGKAFVKSLAINtNSPKIYIVGRNEQVLDSLKTELTSLNS 648
                      699************987655999******************754333 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.3e-05     0.079       4     119 ..     607     726 ..     604     748 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.3e-05
                   TSHHHHHHHHHH..HTT-EEEEEESSGGHHHHHHHHHHHTTSE..E..EE-.-TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HH CS
  adh_short_C2   4 sgIGraiAkala..eeGaevvltdlneeakkrveelaeelgae..v..lec.DVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsre 93 
                    gIG+a +k+la   +  ++ ++ +ne+  +++++  ++l+++  +  ++c D +  ++v+a+ ++++++ +k+Dil  + g++    g+  + ++e
    KKY18531.1 607 GGIGKAFVKSLAinTNSPKIYIVGRNEQVLDSLKTELTSLNSSgtYipIPCrDLSLIKEVDAVSRKIKSQEEKIDILYQSQGYVSF--GK-RDENEE 700
                   5899999988772255667999999999966666666667655542487777*********************************9..44.5999** PP

                   HHHHHHHHHTHHHHHHHHHHHHHCTS CS
  adh_short_C2  94 efdraldvnlyslfllakaalplmke 119
                   ++d+  +v  y+ ++++  +l  +++
    KKY18531.1 701 GLDKLASVRYYGKIRFILNFLDQLEA 726
                   ************99998888775544 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.8       7.1   1.1e+04      32      68 ..     524     559 ..     518     563 .. 0.61
   2 ?   13.8   0.0   3.5e-05     0.052       2      46 ..     601     645 ..     600     674 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 7.1
                      SSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHT CS
  Sacchrp_dh_NADP  32 rskeklealaakalgvrfeaialdaenyeavLaallk 68 
                      ++k++ ++la    ++rf++++    + e+ ++++++
       KKY18531.1 524 KEKRRSKKLA-RRENERFTKMTEEERQAEEQTKRMIE 559
                      4444544444.34677777776666666666777766 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3.5e-05
                      EEE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTT CS
  Sacchrp_dh_NADP   2 liiGa.GsvGqavaellarhfdvdaeitvadrskeklealaakalg 46 
                      +++G+ G++G+a+++ la + +  ++i +++r+++ l+ l+ ++++
       KKY18531.1 601 VVVGGtGGIGKAFVKSLAINTNS-PKIYIVGRNEQVLDSLKTELTS 645
                      678888**************998.5**********99999876644 PP

>> GARS_N  Phosphoribosylglycinamide synthetase, N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.023        34      43      87 ..      31      73 ..       6      75 .. 0.79
   2 ?    6.3   0.0     0.011        17       3      38 ..     601     641 ..     599     684 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.023
                HHHHHHHCTESEEEE-SHHHHHTTHHHHHHHHHT-EEES--CCCC CS
      GARS_N 43 lvefakeekidlvvvGpeapLvaGvadaleeekgikvfGpskeaA 87
                l e  k++++  +v +p   L++ + d    ++ + + Gpsk+a 
  KKY18531.1 31 LDEPTKKHHVGGIVLAPTRELASQIYDVA--KTILVFHGPSKAAF 73
                556678999********************..42466669999986 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.011
                 EEEEESSHHHHHHHHHHTTSTTESEEEEEE--CGG.....T CS
      GARS_N   3 vLvvGsGGRehalawklaqspkvekvyvapgNagt.....e 38 
                 v+v G GG  +a++++la +++  k+y++ +N+ +     +
  KKY18531.1 601 VVVGGTGGIGKAFVKSLAINTNSPKIYIVGRNEQVldslkT 641
                 778899**************************998654441 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3   0.00057      0.85      49     118 ..     102     170 ..       6     182 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00057
      AAA_22  49 sstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqh.lrseealeeLrsllnl 118
                 +st+ ++ l+++lr   + l + ++++ e+l+  + ++ + +  e+l++DEa++ l  +   e+L ++l+l
  KKY18531.1 102 GSTTAAQDLSQFLRTSPNLLISTPGRLLEILSSPHVHCPQSSF-EVLVLDEADRlL-DMGFKEDLQKILKL 170
                 5556666666666666666666666666666666777777777.**********55.44444444333332 PP

>> MIF4G_like_2  MIF4G like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.029        43     190     230 ..     385     425 ..     356     466 .. 0.72
   2 ?    6.0   4.4    0.0049       7.4     179     236 ..     484     556 ..     474     588 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.029
  MIF4G_like_2 190 eeeeeleraeekleaaqkeqkelflivferlveilseslee 230
                    +e++ +++ +kl a+ +e+++l     +++v+++ +  ++
    KKY18531.1 385 ISEDQSTAVTQKLRAMVREDRALHDKAQKAFVSWVRSYSKH 425
                   578999*****************************999322 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0049
  MIF4G_like_2 179 eee..kakeeed.............keeeeeleraeekleaaqkeqkelflivferlveilsesleeletsgs 236
                   + +   a+ +e+             +++ +  +++e+k++++++ +k+l ++ +er++++ +e  +  e++++
    KKY18531.1 484 QRKlaLAEFQENghyqgtkptapqkSQTTPWSQKIEKKVDKEKRRSKKLARRENERFTKMTEEERQAEEQTKR 556
                   222332222222445566677777788899999***************************9999443333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1538  (0.0857828); expected 358.6 (0.02)
Passed bias filter:                      709  (0.0395449); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.98u 0.35s 00:00:01.33 Elapsed: 00:00:00.52
# Mc/sec: 5242.54
//
Query:       KKY18532.1  [L=367]
Description: putative actin-related protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-18   64.1   0.1    2.4e-14   52.8   0.0    3.0  2  Actin     Actin
  ------ inclusion threshold ------
      0.043   12.4   0.0      0.067   11.7   0.0    1.2  1  Lon_2     Putative ATP-dependent Lon protease
      0.089   11.6   0.0       0.34    9.7   0.0    1.8  2  MreB_Mbl  MreB/Mbl protein


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   4.1e-18   2.4e-14     114     364 ..      10     240 ..       5     248 .. 0.72
   2 !    2.8   0.0     0.006        36     366     400 ..     296     330 ..     270     336 .. 0.74

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 4.1e-18
       Actin 114 lEivfEkfkvpalylaksavlsafasgkstglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellssknvevtprylikkkkvveaessa 212
                 l +vf  ++++++ l  s++    a+g++++lvvD+G ++t+v++V++    +  ++rs  + k+  ++++++l             +k + +      
  KKY18532.1  10 LHLVFTRWNFASVGLLPSPTTITLAAGLRCALVVDIGWAETTVTAVYEYR--ETNTQRSTRAMKQTVREMAKVLYPP----------AKDDEI------ 90 
                 6799*******************************************966..4566676666666666666655553..........122222...... PP

       Actin 213 ekeelekltesyktleeeevleeiKesvcevsedpegdeeksssspeksYeLPDgseik.lgeeRfk....vpEiLFdpsligsesaleeekskllgis 306
                  + ++++ + +++ ++ee +++      c+    +  ++e+  ++ +++ e+P gs++  l++ R      v  +LF +  + ++       ++ l ++
  KKY18532.1  91 -TAKATDEHVNFD-FAEEVIVR---LGWCRTIIGEP-SSEALGTEQTVQIEMPSGSQLPvLETTRRAlsqpVETALFASGFSRQDLD-----DEELPLP 178
                 .122223334443.33444443...34566655555.5677788999********96541455554311224457999888777766.....56799** PP

       Actin 307 elivaainacdvdlrpeLlanivvtGGnsllpglteRlekelaqlaskgv....kvkiiape 364
                 +l+++a+  +++d+r   +++i+ tGG s +pgl++R+  e+a+l+s+      + k+i +e
  KKY18532.1 179 QLVFRALTVLPPDVRGICMSRIIFTGGGSNIPGLSKRVLDEVATLMSSYGwnnvRGKVIDKE 240
                 ********************************************854322232266666665 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.006
       Actin 366 erkysaWiGGSiLAslgtfqqlwvskqEYeEqGss 400
                  ++ +aW G+S+L+ ++    + v ++ +  +G  
  KKY18532.1 296 VKSLGAWAGASLLSGMKVRGLVEVERERFLQHGLA 330
                 57899*********999988888888888888766 PP

>> Lon_2  Putative ATP-dependent Lon protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.1e-05     0.067     382     429 ..      51     101 ..      47     113 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.1e-05
       Lon_2 382 vveelvelgkklsqRdekavkktvsgllKllfP...deevtkeeleellel 429
                 +v+ + e++++ +qR ++a+k+tv  ++K+l+P   d+e+t + ++e +++
  KKY18532.1  51 TVTAVYEYRETNTQRSTRAMKQTVREMAKVLYPpakDDEITAKATDEHVNF 101
                 667788999999*********************665577777766666654 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.12   6.9e+02     147     173 ..      40      67 ..      30     111 .. 0.77
   2 ?    9.7   0.0   5.7e-05      0.34     256     297 ..     180     220 ..     167     229 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.12
                 EEEEEE-.SS-EEEEEEETTEEEEEEEE CS
    MreB_Mbl 147 nmvvdiG.ggttevavislggivtsksv 173
                  +vvdiG + tt  av  + +  t++s 
  KKY18532.1  40 ALVVDIGwAETTVTAVYEYRETNTQRST 67 
                 6888888444555566666665555555 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 5.7e-05
                 HHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH CS
    MreB_Mbl 256 avkevLektppeLaadivdrgivltGGgallkgldkllseet 297
                  v ++L   pp+  + i+   i++tGGg+ + gl k + +e+
  KKY18532.1 180 LVFRALTVLPPDVRG-ICMSRIIFTGGGSNIPGLSKRVLDEV 220
                 677889999999876.66666999**********99988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2392.28
//
Query:       KKY18533.1  [L=811]
Description: putative flap structure-specific endonuclease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-25   87.2   0.0    1.3e-24   86.3   0.0    1.4  1  XPG_I     XPG I-region
    1.9e-18   67.3   0.1    4.9e-18   66.0   0.1    1.8  1  GEN1_C    Holliday junction resolvase Gen1 C-terminal domain
    0.00038   20.9   0.0    0.00092   19.7   0.0    1.6  1  XPG_N     XPG N-terminal domain
  ------ inclusion threshold ------
      0.034   13.6   0.0      0.064   12.7   0.0    1.4  1  XPG_I_2   XPG domain containing


Domain annotation for each model (and alignments):
>> XPG_I  XPG I-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.0     3e-28   1.3e-24       2      94 .]     109     199 ..     108     199 .. 0.93

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 3e-28
                 HHT--EEE-SS-HHHHHHHHHHTTSSSEEE-SSSHHHHTT-SEEEESTT.ECECTT..EEECEEEEEEHHHHHHHHT--HHHHHHHHHHHCET CS
       XPG_I   2 lmgipyvvApgEAEAqcayLqkkglvdaviseDsDlllFGapkvlrnlskkkskkkkekekkkvevidlekvlkelgltreqlidlaillgcD 94 
                 l+++py++ApgEAEA+ca+Lq++g+vdav+s+D+D+++FG++ +l+n+s  ++ ++ +++ ++v+v++ +++ ++ gl+ ++++ +a+l+g+D
  KKY18533.1 109 LFHFPYLTAPGEAEAECAALQRRGVVDAVMSQDADAVMFGSTITLKNWS--SEASRGSHAPTHVDVLSAQEIYEKSGLDTNAMVLVALLSGGD 199
                 799*********************************************9..3334445799******************************98 PP

>> GEN1_C  Holliday junction resolvase Gen1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.1   1.1e-21   4.9e-18       2     103 ..     359     473 ..     358     475 .. 0.79

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 1.1e-21
      GEN1_C   2 vkaIhgrRqhastDgllElRvevvpaqlVaidlsgeegkreepagreglaededded..eeee...........eeasakkkrkkkpydPseperiWip 87 
                 v +I +r + +  Dg++E+R+e+vp+++V+id ++ee+ ++++++ ++ +e  +  d  + ++            + s+ kkrk++++dP+ pe+ W+p
  KKY18533.1 359 VNSILSRGHRFEHDGISEIRLEMVPSHFVPIDIEQEEDRPPKESQLQEGEEIGELGDgvDGARdgieitssqaaIPMSPSKKRKAPTWDPDLPEKYWVP 457
                 6678887777999****************************877744433333322222333355556666665789999******************* PP

      GEN1_C  88 eslvrlgaPelVeeye 103
                 e++vrlg+P+++e+++
  KKY18533.1 458 ETIVRLGIPAIIEAWD 473
                 ***************8 PP

>> XPG_N  XPG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     2e-07   0.00092       1      89 [.       1      89 [.       1      93 [. 0.80

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2e-07
                X--TTHHHHHHHH-..GEEEEEGGGGTT....EEEEEEHHHHHHHHHHHSE.ETTEE-BS-HHHHHHHHHHHHHHHTTEEEEEEE--.S--GGGHH CS
       XPG_N  1 MGikgLlkllkeva..airsvsiealeg....kklaiDaslwlyrfliavreqlgnalentshlmglfsrllrlldfgikPifVFdg.kapdlkke 89
                MGi g+lk + + +  a+ +++ie+le      ++aiDa +w  +   + ++q g    n   + ++  rl+rll + i+P+fV+dg ++p +k++
  KKY18533.1  1 MGIPGILKEIGKGQrvALAKLAIEHLERtkrpLRIAIDAAIWSFQ---NQASQGGL---N-PAIRVFYFRLIRLLALPIHPLFVYDGpNKPRVKRN 89
                9*********999988999*******9965555799999999655...33434333...3.56789999******************445678775 PP

>> XPG_I_2  XPG domain containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.4e-05     0.064      22      73 ..     113     160 ..      93     200 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.4e-05
     XPG_I_2  22 itevvpgEADkfcAvlA.rklgcaVLTsDSDLlvhdlgeegsvifldsielss 73 
                 ++   pgEA ++cA+l  r   +aV+++D D + +     gs i l++ + + 
  KKY18533.1 113 PYLTAPGEAEAECAALQrRGVVDAVMSQDADAVMF-----GSTITLKNWSSEA 160
                 56678************999***********9999.....6666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 4875.43
//
Query:       KKY18534.1  [L=514]
Description: putative solid-state culture specific [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.6   0.0       0.28   11.5   0.0    1.6  1  Cauli_VI  Caulimovirus viroplasmin


Domain annotation for each model (and alignments):
>> Cauli_VI  Caulimovirus viroplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.6e-05      0.28       8      40 ..      95     127 ..      93     129 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.6e-05
    Cauli_VI   8 GrepgiYttWdecqkqvkgfpgakyKsFktrae 40 
                 G+ p i+ tWde ++  ++ +   +K F+++ae
  KKY18534.1  95 GNMPTIFFTWDEDESSPSRTEVEAFKTFSSLAE 127
                 888***************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 3073.00
//
Query:       KKY18535.1  [L=588]
Description: hypothetical protein UCRPC4_g04871 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4149.57
//
Query:       KKY18536.1  [L=551]
Description: hypothetical protein UCRPC4_g04872 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-45  156.1   2.9    2.3e-45  155.7   2.9    1.1  1  Alpha-amylase  Alpha amylase, catalytic domain
    6.7e-25   87.2   0.0    1.7e-24   85.9   0.0    1.7  1  DUF1966        Domain of unknown function (DUF1966)


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.7   2.9   2.5e-49   2.3e-45       1     335 [.      58     361 ..      58     363 .. 0.87

  Alignments for each domain:
  == domain 1  score: 155.7 bits;  conditional E-value: 2.5e-49
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE.......-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHH CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifk.......spqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslk 89 
                    G + Gi +kLdY+ ++G+ta+ +sPi++       + +a hgY+ ++ ++++ +fG++ dlk+L +++h++++++++D+V N ++++   ++   +
     KKY18536.1  58 GSWAGIVDKLDYIADMGFTAVQISPIVEnlpnntiYGEAFHGYWSQNNYALNSNFGDASDLKNLADELHKRDMYLLVDVVSNEMAYDIGNANMTST 153
                    88*********************************999************************************************9996444333 PP

                    STTSGGGCCC-E......ESS-STTC-TTTTCSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCC.CCCCCCTTT-SEEEETTCCCTTTCCCC CS
  Alpha-amylase  90 kkgepkrdyyiwkegkeekeppnnwkslfdgsaweydekaqeyylhlflkklpdLnteneevrkelkd.vvkfwlekgidGfRlDvvkhvskveal 184
                     +  +++d+y +++        +  +s+   ++w+++++    +l  +    p L  +n+++ +  ++ v +++ + +idG+RlD  k+++     
     KKY18536.1 154 -TYIDYADFYPFNDE-------SYYHSYCAITDWSNETMYTTCWLGTEGVATPTLILTNSSIAETQQQwVKELVANYSIDGIRLDGEKQIES---- 237
                    .44456666665433.......33445566778888888888788889999*****************9999999*****************.... PP

                    HCCHCCHHHHHHHHHHHTCCGTT-EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS-HHHHHHHHHHHHHHS-CCCTTC CS
  Alpha-amylase 185 esngeflheftqalnetvasrkevmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlksisakklkellkkwlkaleeaaeea 280
                         f++ f  a+         v+t+gEvs+++     v+ +++ +      ++p +++  +a+     +  ++ +l  ++ ++++a+++ ++  
     KKY18536.1 238 ----GFIKPFVDAAG--------VYTMGEVSDGDAT--FVCDYQNLTAGL--ENYPLYYTIIRAF-----TAGQMSDLVGMIGDVRAACSD-TQYL 311
                    ....*******9999........89******98884..555555555444..4899999998888.....5566999*************9.9999 PP

                    EEES--TTS--HHHHTTSSTTTTHHHHHHHHHCCCTSSSEEEEETTCCCT----S CS
  Alpha-amylase 281 vtflgnHDqeRilsrlgddsaeaekklklaaillltlrGvpviYyGeEigmtggk 335
                    ++f++n D+eR++s++ d +      +k+a++++lt +G+p iYyG E+++ g +
     KKY18536.1 312 ANFIENQDNERFASYTDDIE-----LAKNAMAFTLTADGIPKIYYGSEQHLEGLD 361
                    9***************9999.....8************************99865 PP

>> DUF1966  Domain of unknown function (DUF1966)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.0   1.8e-28   1.7e-24       2      90 .]     409     497 ..     408     497 .. 0.96

  Alignments for each domain:
  == domain 1  score: 85.9 bits;  conditional E-value: 1.8e-28
     DUF1966   2 lysdkstlalrKgpegsqvvtvlsnkGssgssytlslkssgyaagtevvdvlsCksvtvdssgeltvtmekGe.PrvlvpksklegsglC 90 
                 ly+d+st+a rKgp+g q+v+vlsn+G +g++y+ls++  +  +g +++++l C++v ++s+g ++v+me+G  P++++p+ +l+gsglC
  KKY18536.1 409 LYTDNSTYAARKGPNGVQIVSVLSNQGKNGEAYKLSVP-GAGDEGLNMTEILGCTTVVTGSNGTIAVEMEAGApPKIFFPTFNLNGSGLC 497
                 8*************************************.55599***************************97369************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 3326.39
//
Query:       KKY18537.1  [L=1211]
Description: putative meiotically up-regulated protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-28   97.3   0.2    8.5e-17   61.3   0.0    2.9  3  C2        C2 domain


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1      0.84   1.5e+04      36      54 ..     107     123 ..      97     129 .. 0.73
   2 !   61.3   0.0   4.8e-21   8.5e-17       5      93 ..     484     581 ..     480     591 .. 0.89
   3 !   33.0   0.0   3.2e-12   5.7e-08       4     103 .]     671     797 ..     668     797 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.84
                 EEE-SCSSSSSSEEEEEEE CS
          C2  36 akTrviknslnPvWnekft 54 
                 +kT+  ++  nP+++ek  
  KKY18537.1 107 VKTD-ASQP-NPEYKEKQD 123
                 5677.5555.9***99865 PP

  == domain 2  score: 61.3 bits;  conditional E-value: 4.8e-21
                 EEEEEEESSSSSSTTSS....CEEEEEEEE..ECEEEEEE-SCSSSSSSEEEEEEEEEESC...HTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHT CS
          C2   5 vtvieAknLpnkdkkgs....sdpyvkvsl..dgkqkakTrviknslnPvWnekftfevae...leeakLeveVfdndrlskddfiGkveiplstlls 93 
                 v++++A +L ++d  gs    sdpy+ +s+   gk +++Trvi + lnP W+e+  + v++   +++++L ve++d+dr s dd++Gkve++++++ +
  KKY18537.1 484 VRIHRAVGLSKQDRRGSkgggSDPYINLSFskYGKPMYCTRVITDDLNPMWEETAALLVTPdliKADEQLSVELWDSDRNSADDIVGKVELSMQKMIQ 581
                 89*******999884445555*********999**************************999********************************9443 PP

  == domain 3  score: 33.0 bits;  conditional E-value: 3.2e-12
                 EEEEEEEESSSSSSTTSS..........................CEEEEEEEEECEEEEEE-SCSSSSSSEEE...EEEEEEESCHTTSEEEEEEEEEC CS
          C2   4 evtvieAknLpnkdkkgs..........................sdpyvkvsldgkqkakTrviknslnPvWn...ekftfevaeleeakLeveVfdnd 73 
                 +v v++  nL+  ++kg+                          + +y+++ l+++  ++Tr +  s +P++n   e+f+ ++    ++ ++v+V d++
  KKY18537.1 671 SVIVHQIVNLELENIKGTegnrkgkeyepakaygesteeqskklPTSYCTILLNDQLAYRTRAKAVSSKPIFNagtERFVRDW---RSTIVTVTVRDQR 766
                 56677777777776655555555556666666666666777777******************8855559***95445555555...55*********99 PP

                 SSSTEEEEEEEEEEGHH.HHTTHHHHEEEEH CS
          C2  74 rlskddfiGkveiplst.llsgeeaegwypl 103
                   ++d ++G+v ++ls+ l+++++ ++wypl
  KKY18537.1 767 YREHDPILGVVPLKLSDiLTTSSQVTRWYPL 797
                 977777***********9999********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.52
# Mc/sec: 6974.93
//
Query:       KKY18538.1  [L=326]
Description: putative n-acetylglucosamine-6-phosphate deacetylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      9e-12   45.2   0.4    1.2e-08   34.9   0.0    2.2  2  Amidohydro_3    Amidohydrolase family
    1.1e-07   31.5   0.2    2.8e-07   30.2   0.2    1.7  2  Amidohydro_1    Amidohydrolase family
  ------ inclusion threshold ------
       0.99    9.4   4.1       0.31   11.0   0.8    1.8  2  Neocarzinostat  Neocarzinostatin family


Domain annotation for each model (and alignments):
>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   0.00015      0.89       3      20 ..      53      70 ..      51     165 .. 0.63
   2 !   34.9   0.0     2e-12   1.2e-08     404     472 ..     265     322 ..     191     323 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00015
  Amidohydro_3  3 iDakGrlvlPGFvDsHtH 20
                  iD++G++v+PGF D  t 
    KKY18538.1 53 IDLQGAIVAPGFLDLQTN 70
                  9*************8665 PP

  == domain 2  score: 34.9 bits;  conditional E-value: 2e-12
  Amidohydro_3 404 pdeelsleealalyTrgpAkalgledrkGtLevGadADlvvldadpldvdppelaearvrltvvdGrvv 472
                   ++    + ea++ +T++ A+++g+++r G +e+G +AD++++d  p++ +        v++t+++G+ v
    KKY18538.1 265 EMTGCNIAEAVRCVTENVATMMGETKR-GVIEPGRRADFAIID--PVTYT--------VKETWIEGKKV 322
                   55666799******************9.**************7..66666........67888888866 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.31   1.9e+03       1      50 [.      59     107 ..      59     112 .. 0.67
   2 !   30.2   0.2   4.6e-11   2.8e-07     192     343 ..     185     321 ..     124     322 .. 0.60

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.31
                   EEEE-EEEEEEECETTECSSS...GHHHHHSTTHHHHHHHHHHHHHHHHTTEE CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrga...tledwlvppetaaealesgiktalksGtt 50 
                   iv PG+ D+++ + ++    +    l +  +++++  e l +++ + l+sG+t
    KKY18538.1  59 IVAPGFLDLQTNGLGG----VhftSLGKNAASERDDIERLGRVAGKQLESGVT 107
                   6889999999998544....223345555577777777777777777777766 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 4.6e-11
                   EHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHH........SEHHHHHHHHHHHHTSCEEE.EEECTTSSCCGGHHHH.HHHHHHHHHHCCTTTTHC CS
  Amidohydro_1 192 lahgvhltpteaellkerlkeagvahcpfsnsi........lrsgrealrkaldeGvkvgl.gtDgaasgnslnllee.lrlalklqrgllyedeeg 278
                   + +g+hl+p+ +++++ r + ++  ++ +s +          + g ++ ++    G kv++ gtD    g+++ l++e +r            +e++
    KKY18538.1 185 IPDGIHLHPS-IVTIALRTNPTKCMLVTDSIELaglpdglyPGHGQIPQKQRKV-GNKVTIeGTD-TLVGSCI-LVDEcVRRT----------VEMT 267
                   6666666666.3333333333333333444443444444334444444333322.4444444777.4444555.445524444..........599* PP

                   HCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSEEEEEEEETTEE CS
  Amidohydro_1 279 glslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaafvglkkdgnvkkvivkGkl 343
                   g+ ++ea+r++T n A  +g + k G ie+G++AD++++          +    +vk +++ Gk 
    KKY18538.1 268 GCNIAEAVRCVTENVATMMGET-KRGVIEPGRRADFAII----------DPVTYTVKETWIEGKK 321
                   ********************75.****************..........6677778888888875 PP

>> Neocarzinostat  Neocarzinostatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.63   3.8e+03      88     109 ..     134     155 ..     130     156 .. 0.80
   2 ?   11.0   0.8   5.2e-05      0.31      11      54 ..     237     280 ..     231     290 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.63
  Neocarzinostat  88 acvialadasndaaegagvsls 109
                     +  ia  d++ +a ++++++++
      KKY18538.1 134 GHSIADYDVGLTALDVGATAIT 155
                     5678888999999999999987 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 5.2e-05
  Neocarzinostat  11 dgdvvtvsgtGftagstlalgeCvavapggvaCnkaagavvtad 54 
                      g+ vt+ gt    gs +++ eCv+ + + + Cn a+ +  +++
      KKY18538.1 237 VGNKVTIEGTDTLVGSCILVDECVRRTVEMTGCNIAEAVRCVTE 280
                     5899********************************99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2162.95
//
Query:       KKY18539.1  [L=643]
Description: putative set domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.49
# Mc/sec: 3908.41
//
Query:       KKY18540.1  [L=535]
Description: putative nadh-ubiquinone oxidoreductase 51 kda subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-47  160.6   0.0    3.7e-47  160.0   0.0    1.3  1  Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subu
    1.3e-23   82.9   3.0    1.5e-20   73.0   1.0    3.1  3  NADH_4Fe-4S   NADH-ubiquinone oxidoreductase-F iron-sulfur bi
    1.3e-08   34.6   0.0      4e-08   33.0   0.0    1.9  1  SLBB          SLBB domain


Domain annotation for each model (and alignments):
>> Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0   0.0   6.2e-51   3.7e-47       1     149 [.     101     274 ..     101     277 .. 0.95

  Alignments for each domain:
  == domain 1  score: 160.0 bits;  conditional E-value: 6.2e-51
  Complex1_51K   1 vkeagivGrGGagfPthvKlkakakkkk......kylivNaaEcEPgltkDrllmreepheileGlkiaaealgaekgvigvrdekpeaiealekal 91 
                   +k++g++GrGGagfP+++K+++++ k+       +yl+vNa+E+EPg++kDr +mr++ph+++eG+ ia +a++a+ ++i++r+e ++++  l++a+
    KKY18540.1 101 IKASGLRGRGGAGFPSGLKWSFMNFKDWdkdnkpRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNATAAYIYIRGEFYHEATVLQRAI 197
                   799*******************987443678889*************************************************************** PP

  Complex1_51K  92 aeakaagl...........ldievvklagkYpaGeekaLiesltgr.evprgkpp..advgv.....vvnNveTlaa 149
                   +ea++agl           +d+ ++++ g+Y++Gee+ Lies++g+ + pr kpp  a vg+     +v NveT+a 
    KKY18540.1 198 QEAYKAGLigknacgtgydFDVYLHRGMGAYVCGEETSLIESIEGKaGKPRLKPPfpAAVGLfgcpsTVTNVETVAV 274
                   *******************************************************8888888************985 PP

>> NADH_4Fe-4S  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.35   2.1e+03      19      30 ..     277     288 ..     277     298 .. 0.81
   2 !   73.0   1.0   2.6e-24   1.5e-20       2      63 ..     390     451 ..     389     462 .. 0.94
   3 !    7.8   0.0   0.00057       3.4      62      84 ..     477     499 ..     474     500 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.35
                  HHHHIIIIHHHH CS
  NADH_4Fe-4S  19 tpCreGtkrlle 30 
                  t Cr G k+ + 
   KKY18540.1 277 TICRRGGKWFAS 288
                  68*******876 PP

  == domain 2  score: 73.0 bits;  conditional E-value: 2.6e-24
                  HHHHHHHHHHHH--S--HHHHIIIIHHHHHHHHHTBT---HHHHHHHHHHHHHHSS--SSTH CS
  NADH_4Fe-4S   2 varrllefyaaesCGkCtpCreGtkrllelleriaagegteedldlleelaetikgtslCal 63 
                  ++ rl +fy++esCG+CtpCreG+++  ++++r+++g+++e+++d+l+el+++++g+++C+ 
   KKY18540.1 390 MISRLSSFYKHESCGQCTPCREGSTWTMKMMQRFENGQAREREIDMLQELTKQVEGHTICGK 451
                  678999******************************************************86 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00057
                  THHHHHHHHHHHHHHHHHHHHHH CS
  NADH_4Fe-4S  62 algdsaanpvlsalrkFreefea 84 
                  alg++ a+p++ ++r+Fr e+e+
   KKY18540.1 477 ALGEAFAWPIQGLIRHFRPELEK 499
                  699*****************986 PP

>> SLBB  SLBB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   6.7e-12     4e-08       2      57 ..     300     350 ..     299     351 .. 0.91

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 6.7e-12
                 EEEESSBSS-EEEEEETT-BHHHHHHTTT-SBSS.........-E.EEE-SSSSS-- CS
        SLBB   2 VtVtGeVkrPgnyevpigttlsdlieqaGGltddadlksvnLarl.avipgGpmmgi 57 
                 ++++G V++P+++e  + ++l++li++++G+ + ++        l a+ipgG++++i
  KKY18540.1 300 FCISGQVNNPCTVEEEMSIPLRELIDKHCGGVRGGWD------NLqAIIPGGSSTPI 350
                 79*************************8888888773......7889********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 3433.73
//
Query:       KKY18541.1  [L=1721]
Description: putative nucleoporin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-66  222.9   0.1    7.1e-66  222.3   0.1    1.3  1  Nup96           Nuclear protein 96
    2.7e-49  167.1   0.0    5.1e-49  166.2   0.0    1.5  1  Nucleoporin2    Nucleoporin autopeptidase
    7.1e-23   81.3 256.6      1e-07   32.7  34.2    9.3 11  Nucleoporin_FG  Nucleoporin FG repeat region


Domain annotation for each model (and alignments):
>> Nup96  Nuclear protein 96
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.3   0.1   1.2e-69   7.1e-66       3     292 .]    1241    1547 ..    1239    1547 .. 0.91

  Alignments for each domain:
  == domain 1  score: 222.3 bits;  conditional E-value: 1.2e-69
       Nup96    3 ifalLsghqveeAcelAldagdlrLAtllsqagg.ddevrkdlqeQleeWreekvdseieeellkiyelLaGnvlvsegkk.kke....stinvle. 92  
                  ++++Ls ++ve Ac+++ld+gd++LAtl+s +g  d+++r+ ++ Qle Wre+++ se+++e++ +yelL+Gn++++egk+   +    st++++e 
  KKY18541.1 1241 AVRYLSLRDVEGACKSLLDNGDFHLATLVSEIGNsDQSFRENIKFQLERWREQGIISEMTDEIRTLYELLGGNTTICEGKSnVPNedraSTFSISEr 1337
                  7899****************************9846666*****************************************9655589********** PP

       Nup96   93 .gldWkralglhlwYgisadasieeaveaYeealesgeetakPlpwyleetskesskdakeekrerDllyhLLklyakk....taslesvlePesvs 184 
                   +ldW++a+gl l+Ygi +d+++e av++Y+e+les+ee+a P+   + +ts+       + +  +++++ LLk+ya+     +   ++v+ P+++s
  KKY18541.1 1338 wDLDWLQAFGLVLFYGILQDEPLEVAVAKYTEKLESKEESAFPSVENIGDTSRI----VPS-DA-ESPFWVLLKIYAETkgrgSQTSQHVILPQAIS 1428
                  ****************************************99999444333332....222.23.38*********885467677777799999997 PP

       Nup96  185 ..pspldyrlsWhLyqvLsaasaeaeklssakadaltlsfasqLeaaglwewAvfVllhledparRekavkellarhasl..........eeesdda 269 
                    ++p+d r++++L+++L  as++  ++++++ad+l++++a+q  aag+   A+  +l+l+d+++Re a++++l+ ha+           + +++  
  KKY18541.1 1429 plSKPFDSRFTFQLHHALA-ASSDEMHVDQDRADQLAMDLAFQYSAAGMYLDAIHAALFLSDDQQRELAIRNILNHHAAVipeyleghegSAPEKAP 1524
                  5579***************.7899999*************************************************************998889999 PP

       Nup96  270 keeflveklkiPeaWiheAkAly 292 
                  ++  l ++lkiP+ W  eAkAly
  KKY18541.1 1525 EWFVLENNLKIPRFWRCEAKALY 1547
                  99999****************97 PP

>> Nucleoporin2  Nucleoporin autopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.2   0.0   8.5e-53   5.1e-49       2     149 .]     679     823 ..     678     823 .. 0.97

  Alignments for each domain:
  == domain 1  score: 166.2 bits;  conditional E-value: 8.5e-53
                   TTEEEES-HHHHHTS-HHHHTSBSS-EEEETTTEEEEESS-B--GGG-HHHHBTTTEEEETTEEEESSSCCC.---TTSTT-S-EEEEESS---B-T CS
  Nucleoporin2   2 gdYytePsleeLkkmseeelsavkdFtvgrkgvGsveFlepvdlssldldeiagkivklekkevtVYpdeekekppvGegLNkpaeitLenvwpkdk 98 
                   g+Y+++Ps +eL+km +e+lsa k+Ftvgr+g+Gsv+F++ vdl+++ ld+++gkiv +  +++tVYpd+++ kpp+G+gLN+p+ + Len+wp+  
    KKY18541.1 679 GEYWMKPSRAELNKMPREKLSAFKEFTVGRQGCGSVTFNGAVDLTKIPLDDLYGKIVDIGVRSITVYPDAST-KPPQGSGLNVPSILRLENSWPR-- 772
                   79********************************************************************55.**********************.. PP

                   TT--B---TT-HHHHHHHHHHHH-SSSEEEEEETTTTEEEEEES--XXXXX CS
  Nucleoporin2  99 atkeeikdkskarvkkhieklkkvegteFvsydpetgtwtfkVeHFsrYgl 149
                   ++ +++  +s++ +++h+++lk+v+gt+Fv+y+++tg+wtf+V+H++rYgl
    KKY18541.1 773 SRGKPSAATSGPIFDRHVNRLKQVKGTNFVNYETQTGIWTFTVPHYTRYGL 823
                   577999*******************************************97 PP

>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7  47.2      0.16   9.4e+02       2      91 .]      40     117 ..      18     121 .. 0.73
   2 !   29.7  38.5   1.4e-10   8.6e-07       1      91 []      88     173 ..      88     173 .. 0.86
   3 !   24.8  35.4   4.8e-09   2.9e-05       7      81 ..     149     225 ..     148     229 .. 0.87
   4 !   32.7  34.2   1.7e-11     1e-07       9      91 .]     225     297 ..     223     301 .. 0.83
   5 !   28.9  43.3   2.5e-10   1.5e-06       1      91 []     255     337 ..     248     337 .. 0.90
   6 !   27.0  39.8     1e-09   6.1e-06       1      91 []     281     369 ..     281     369 .. 0.83
   7 !   17.4  25.5   9.8e-07    0.0059       8      72 ..     329     392 ..     327     406 .. 0.78
   8 ?   -0.5   3.5      0.38   2.3e+03      27      66 ..     465     504 ..     448     520 .. 0.69
   9 ?   -2.8   0.9         2   1.2e+04      49      71 ..     582     604 ..     550     641 .. 0.55
  10 ?   -0.7   0.2      0.44   2.6e+03      55      77 ..     927     948 ..     872     957 .. 0.57
  11 ?   -2.3   0.0       1.4   8.3e+03      27      79 ..    1021    1028 ..    1007    1049 .. 0.57

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.16
  Nucleoporin_FG   2 lFGaaatstsgglFGststt.....atstgglFGasstatatasggglfgatsqtaasgglFGstnattqttatgglFGstaataqqttsgglFG 91 
                     +FG   +s++gg FGs++++     ++s+++ FG   ++++++sg   fg+   +++sgglFG+++at     +g++FG+ ++++  +tsgglFG
      KKY18541.1  40 GFG---SSNTGGGFGSSTAAnpfgqTSSAATPFG---QTATATSG--GFGS---NTNSGGLFGAKPAT-----GGSMFGGGQQSS-GATSGGLFG 117
                     344...6667777777777766666566667777...23333333..4877...78899999999865.....789999877766.799999998 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 1.4e-10
  Nucleoporin_FG   1 glFGaaatstsgglFGststt.atstgglFGasstatatasgg.glfgatsqtaasgglFGstnattqttatgglFGstaataqqttsgglFG 91 
                     glFG a+++t+g++FG+ +++  +++gglFG    at  ++gg g fg++++ta+sgglFG++n++t++   gglFGs+++t+  +t+ g FG
      KKY18541.1  88 GLFG-AKPATGGSMFGGGQQSsGATSGGLFG---GATGGSAGGlGGFGQSNNTATSGGLFGQNNNQTSK--PGGLFGSNTSTT-GSTGFGGFG 173
                     79**.**********999999899*******...45555555559********************9998..7*****888876.677777887 PP

  == domain 3  score: 24.8 bits;  conditional E-value: 4.8e-09
  Nucleoporin_FG   7 atstsgglFGststt.atstgglFGasstatatasggglfgatsqtaasgglFGstnattqtta.tgglFGstaata 81 
                     +ts+ gglFGs+++t  +++ g FGa++++++t+sggglfg+++ ++++gglFGs+++++ +t  tgglF ++aa++
      KKY18541.1 149 QTSKPGGLFGSNTSTtGSTGFGGFGANNNTNNTSSGGGLFGNSTPQNTGGGLFGSAQQQSGGTGqTGGLFNQPAAQK 225
                     78999*******99977777889998888888888889*******************99998879******998876 PP

  == domain 4  score: 32.7 bits;  conditional E-value: 1.7e-11
  Nucleoporin_FG   9 stsgglFGststtatstgglFGasstatatasggglfgatsqtaasgglFGstnattqttatgglFGstaataqqttsgglFG 91 
                     +++ g FGs++++++++gglFG      +++sggglfg++sq+++sgglFG+t++ ++   +gglFGs+++++   +sgglFG
      KKY18541.1 225 KPAFGGFGSSTSQPQQSGGLFG----GGSNTSGGGLFGGSSQPQQSGGLFGNTSQGQS---SGGLFGSQQNNQ---QSGGLFG 297
                     5566889999999999999999....77778888899999999999999999998776...799999777765...8999998 PP

  == domain 5  score: 28.9 bits;  conditional E-value: 2.5e-10
  Nucleoporin_FG   1 glFG.aaatstsgglFGststtatstgglFGasstatatasggglfgatsqtaasgglFGstnattqttatgglFGstaataqqttsgglFG 91 
                     glFG ++++++sgglFG+ts+  +s+gglFG  s++++++sgg lfga+ + +++ g FG++n+++q++ +gglFG++ ++    ts+glFG
      KKY18541.1 255 GLFGgSSQPQQSGGLFGNTSQG-QSSGGLFG--SQQNNQQSGG-LFGAKPAGSTGFGGFGGANTQQQGA-SGGLFGNSGNQ----TSSGLFG 337
                     6999999***************.9*******..6777777777.*****99999*********999987.******88875....5999**9 PP

  == domain 6  score: 27.0 bits;  conditional E-value: 1e-09
  Nucleoporin_FG   1 glFG.aaatstsgglFGststtatstgglFGasstatatasggglfgatsqtaasgglFGstnattqttatgglFGst..aataqqttsgglFG 91 
                     glFG ++++++sgglFG++++  +++ g FG ++t+++ asgg lfg+ s +++s+glFG++++++++  +gglFGs+   a++qq+++++lFG
      KKY18541.1 281 GLFGsQQNNQQSGGLFGAKPAG-STGFGGFGGANTQQQGASGG-LFGN-SGNQTSSGLFGGAQQKPAS--GGGLFGSSfgGAQNQQSAGNSLFG 369
                     79**999999999*********.99999***888888888887.****.8999**********98877..788888652234444488888**9 PP

  == domain 7  score: 17.4 bits;  conditional E-value: 9.8e-07
  Nucleoporin_FG   8 tstsgglFGststtatstgglFG.asstatatasgg.glfgatsqtaasgglFGstnattqttatgg 72 
                     ++ts+glFG+++++++s+gglFG + + a++++s+g +lfg+   ++ s++lFG++++++q+++ ++
      KKY18541.1 329 NQTSSGLFGGAQQKPASGGGLFGsSFGGAQNQQSAGnSLFGG---QSGSNSLFGNSQQSQQPSQPQS 392
                     688999999999999999999996444555555555589999...7889999999999999987444 PP

  == domain 8  score: -0.5 bits;  conditional E-value: 0.38
  Nucleoporin_FG  27 glFGasstatatasggglfgatsqtaasgglFGstnattq 66 
                     +++G+ s+a++t+ ++++ g+      +gg FG + +++ 
      KKY18541.1 465 STYGTPSSASSTPGTSSISGSMYGRGFTGGSFGRSMTKSF 504
                     4566666666666666666766666777777777766554 PP

  == domain 9  score: -2.8 bits;  conditional E-value: 2
  Nucleoporin_FG  49 sqtaasgglFGstnattqttatg 71 
                      q+ ++   F +t++ +++ta +
      KKY18541.1 582 PQKLKKRVSFDQTTSRENGTALN 604
                     33333333344444333333322 PP

  == domain 10  score: -0.7 bits;  conditional E-value: 0.44
  Nucleoporin_FG  55 gglFGstnattqttatgglFGst 77 
                      g F ++  +t+++   + FG+t
      KKY18541.1 927 AGSFPQPDPATEQE-DESTFGAT 948
                     33333333333332.44444443 PP

  == domain 11  score: -2.3 bits;  conditional E-value: 1.4
  Nucleoporin_FG   27 glFGasstatatasggglfgatsqtaasgglFGstnattqttatgglFGstaa 79  
                      +lFG                                             + ++
      KKY18541.1 1021 SLFG---------------------------------------------QHEE 1028
                      3333.............................................2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1721 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.51
# Mc/sec: 10226.86
//
Query:       KKY18542.1  [L=667]
Description: putative acetyl-coenzyme a synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-87  293.8   0.1    2.2e-87  293.4   0.1    1.1  1  AMP-binding    AMP-binding enzyme
    3.5e-27   95.2   0.5    2.4e-26   92.5   0.2    2.5  3  AMP-binding_C  AMP-binding enzyme C-terminal domain
    3.1e-16   59.0   0.2    6.9e-16   57.9   0.2    1.7  1  ACAS_N         Acetyl-coenzyme A synthetase N-terminus
  ------ inclusion threshold ------
      0.092   12.7   0.0       0.71    9.9   0.0    2.4  2  DUF1967        Domain of unknown function (DUF1967)


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.4   0.1     5e-91   2.2e-87       2     422 ..     100     538 ..      99     539 .. 0.88

  Alignments for each domain:
  == domain 1  score: 293.4 bits;  conditional E-value: 5e-91
                  HHHHHHSTTSEEEEE....CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTE CS
  AMP-binding   2 eeqaaktpdkvalvd....sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledsea 95 
                  +++a k+p+kva+++     geg+++TY+el ++++r A +L+++Gvkkgd+Vai+lp+ pe ++a++a+ ++Gav++++ ++++++ l+  + d+++
   KKY18542.1 100 DRHAIKNPNKVAIIYeadePGEGRKITYGELLREISRTAYVLKQMGVKKGDTVAIYLPMIPEAIIAFMACTRIGAVHSVVFAGFSSDSLKDRVIDAQS 197
                  678889*************99***************************************************************************** PP

                  SEEE.........ETCTCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS.......-TSCCCS-BTTSEEEEEEE--SSSS-EE CS
  AMP-binding  96 kvli.........atvdsel.leklleaaakleavklvivldadellkeeelkeeeeseekae.......kpeeeeelkpddlayiiYTSGTTGkPKG 176
                  kv+i         +    +   + ++ea +k ++v+ v+++++ +    ++++++ + + +++       +   +e+++++d+++++YTSG+TGkPKG
   KKY18542.1 198 KVVItsdegkrggK---LIGtKKIVDEALKKCPDVTGVLMYKRTG----ADVPFTPGRDFWWHeevekypNYLAPEPVNSEDPLFLLYTSGSTGKPKG 288
                  ****9998865441...2333455677777788889999998766....45666666666663356677844466789******************** PP

                  EEEEH.HHHHHHHHHHHHHHC.SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGC.CHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCC CS
  AMP-binding 177 Vmlsh.rnlvanvaslkletr.fklkeddvvlsilplahifglilelllallsGatvvllpkdaa.ldpklllelieklkvtviagvPrvleallesg 271
                  Vm+++ ++l+ ++a+    ++ f++++dd++++  ++ +i+g+++ ++++ll G + v++++++a ++  + +++iek+ v+ ++++P++l+ l ++g
   KKY18542.1 289 VMHTTgGYLLGAAAT---GKYvFDIHDDDTFFCGGDVGWITGHTYVVYAPLLLGVATVVFEGTPAyPNFSRYWDVIEKHDVSQFYVAPTALRLLKRAG 383
                  *****5555555444...345589999**************************************77788889*********************8877 PP

                  CHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTC...EEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEE.TTSEE CS
  AMP-binding 272 alkaakkakdlsslrlvllggeplspellrffralfge...evlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvp.dgeeG 365
                  ++     ++++++lr++ ++gep+ +e+++++++++g+   +++++Y++TEt+ +v+++      +k+gs+  p+ g+e +i+D+  ge+++ +++eG
   KKY18542.1 384 DEH---VKHQMKKLRVLGSVGEPIASEVWKWYHSVVGKeeaHIVDTYWQTETGSHVITPLAGITPTKPGSASLPFFGIEPAIIDPVSGEEIQgNDVEG 478
                  666...4569999***************************99**************884445555789********************999647777* PP

                  EEEEEET..TS-SEBTT-HHHHHHHEEET.CCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 366 ellvrgp..gvmkgYlkkpeataeafdse.grwlrTGDlgrldedGyleivgRkkdlikl 422
                   l +++p  ++++  ++ +++  +++ +  ++++ TGD + +d++Gy++i gR +d++++
   KKY18542.1 479 VLAFKQPwpSMARTVWGAHKRYMDTYLNVyKGYYFTGDGAGRDHEGYYWIRGRVDDVVNV 538
                  ******9778****************952567**************************98 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.86   3.8e+03      16      38 ..       9      32 ..       6      52 .. 0.70
   2 ?   -3.5   0.0         4   1.8e+04       2      13 ..     219     230 ..     219     235 .. 0.81
   3 !   92.5   0.2   5.3e-30   2.4e-26       1      76 []     547     625 ..     547     625 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.86
                   EEE-----TTS.---EEEEEE--- CS
  AMP-binding_C 16 aVvGvpdevkG.ealvafVvlkdg 38
                    Vv+  +ev+  ++++af +  +g
     KKY18542.1  9 PVVAEAHEVDTyHVPKAFSTKGPG 32
                   588889995444999999885333 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4
                    HHHHHHSSTTEE CS
  AMP-binding_C   2 vEsalvshpaVa 13 
                    v +al ++p+V 
     KKY18542.1 219 VDEALKKCPDVT 230
                    678999***997 PP

  == domain 3  score: 92.5 bits;  conditional E-value: 5.3e-30
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE---..-.--HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg..s.ealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    e+E+al++h aVaeaaVvGv+de+ G+a+ afV lkdg  s e+++++L+ +vrk +gp+a+pk+v +vd+lpktrsGK
     KKY18542.1 547 EIEAALIEHHAVAEAAVVGVNDELSGQAVNAFVSLKDGneSnEQIRKDLILQVRKSIGPFAAPKAVFIVDDLPKTRSGK 625
                    8***********************************99542344**********************************9 PP

>> ACAS_N  Acetyl-coenzyme A synthetase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.2   1.5e-19   6.9e-16       1      55 []      42      98 ..      42      98 .. 0.96

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 1.5e-19
                HHHHHHHHHH-HHHHHHHHHCC.S--SB--S-SECSTTTC.T-EESTT-EE-HHHHH CS
      ACAS_N  1 ykelykeSiedpeaFWaeqake.ldWekpfdkvldgskgp.fikWFeGGklNicyNc 55
                y+elykeSie+p++FWa+ a++ l+W+++f+++  gs +  + +WF+ G+lN+++Nc
  KKY18542.1 42 YEELYKESIEQPDKFWAKLARDlLTWDRDFQTTHLGSLAGgDNAWFVEGRLNASFNC 98
                99********************9**********99997666**************** PP

>> DUF1967  Domain of unknown function (DUF1967)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00016      0.71      50      64 ..     141     155 ..     139     157 .. 0.94
   2 ?   -1.4   0.0      0.51   2.3e+03      39      61 ..     541     563 ..     533     564 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00016
                 HHTTT--TT-EEEET CS
     DUF1967  50 LrkaGakeGdtVrIg 64 
                 L+++G+k+GdtV I+
  KKY18542.1 141 LKQMGVKKGDTVAIY 155
                 99***********97 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.51
                 HHHHHTTHHHHHHTTT--TT-EE CS
     DUF1967  39 rrLkklGvedaLrkaGakeGdtV 61 
                 +rL   ++e aL ++ a +   V
  KKY18542.1 541 HRLSTAEIEAALIEHHAVAEAAV 563
                 6899999******9999877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 4352.01
//
Query:       KKY18543.1  [L=264]
Description: hypothetical protein UCRPC4_g04879 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-16   61.2   1.6    4.9e-16   59.3   1.6    1.8  1  GET2      GET complex subunit GET2


Domain annotation for each model (and alignments):
>> GET2  GET complex subunit GET2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   1.6   2.7e-20   4.9e-16       8     239 ..      13     224 ..      10     233 .. 0.70

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 2.7e-20
        GET2   8 rrlLRERRqaKmakGgAssRLnkItgqgssvksst..tsvLdepaaekttpasttasssssasehddp.eiediseiavkpkktasskkksplseesep 103
                  r++RERR+aK+++G + +RL++It    +  +s   +s+L++p a++t  +s t s ++s s+ +dp +i+  +e++ +     ++++  ++ +e ++
  KKY18543.1  13 VRIRRERREAKIKAG-GVDRLERITRASGRTPESIrqDSPLSSPGARSTISQSPTPSPQPSLSNAADPtQIQAQEEFLRSL---LRQQAPAEAGAE-QQ 106
                 59*************.*********9998888877889***********99999999999999999**8888876664333...333333333333.56 PP

        GET2 104 eapqldqllkqllqqqqqgnsensqdaesstPdlfsqllkmmkqgeggsakseeetssspeeaeyqqqlleyhkyqvkklkarfllvrllllllnfvYh 202
                 e+p ++ +++++l+          ++++ + P+     + +++ +  +  k++  +s  ++    ++   e +k+qv+++k+++ ++ +ll++  +v++
  KKY18543.1 107 EDPMIR-MMQSMLGG---------DPSDPNAPE-----MPSFSADDVS--KATGIPSFVTNLFLGKAPETEQQKRQVSLWKMIHGVFSVLLGI-YTVWM 187
                 778899.******99.........333333343.....4444444444..2334444445555566677788899************999999.45555 PP

        GET2 203 vfrssksalvralteasvrnFftvFltfEvvllsiyy 239
                 v +s  s+  +  t++ v n f vF+  E+++ ++++
  KKY18543.1 188 VQTSIASFGANPPTPPMVWNPFLVFVMGELLVEGTRL 224
                 5444333334444444477777777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      603  (0.0336327); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 1761.43
//
Query:       KKY18544.1  [L=256]
Description: putative short chain dehydrogenase reductase family superfamily [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-19   68.5   0.1    7.6e-19   67.9   0.1    1.2  1  adh_short     short chain dehydrogenase
    2.2e-16   60.1   0.0      3e-16   59.7   0.0    1.2  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
     0.0009   19.2   0.0     0.0025   17.8   0.0    1.8  1  KR            KR domain
  ------ inclusion threshold ------
      0.032   13.7   0.0       0.04   13.4   0.0    1.2  1  Epimerase     NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.1   1.7e-22   7.6e-19       3     190 ..       4     190 ..       2     194 .. 0.83

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 1.7e-22
                 EEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 vl++Ga++G+G  ++k++a++  + v  ++rs++    + +e +  g+  ++ ++Dv+++++ ++l +    k +++d++v  AG   +++f e + e+
  KKY18544.1   4 VLIIGATRGLGASLVKAFAQDASTDVYgTSRSSS----IPTEPN--GDIHWITSIDVASESAGSKLADSL--KGKTIDIVVITAGYFPDESFDEPNWEA 94 
                 9*****************9986555553444433....455555..45568889****************..6678**********7666666666666 PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG....TSB-TTBHHHH..HHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short 101 wervievNltgvflltravlpamlkqssGrIvnvsSvag....kvpvagvaaYs..AsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                   +++ +   g++ +++a+++a + q++ + + vsS ag    + +++g+  Y+  AsKaa+++  + l+ +l+++gi v  v+PG+++T+m+k++
  KKY18544.1  95 EIKTYTISSIGPVFIVAALVKAGILQKGSKAILVSSEAGsitlRDESEGGGKYAhhASKAALNMVGKLLSFDLKDKGIAVGLVHPGFMRTEMTKSV 190
                 6677889999************999**************54444566777778666*************************************986 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   6.6e-20     3e-16       1     191 [.       8     198 ..       8     210 .. 0.84

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 6.6e-20
                   TTTTSHHHHHHHHHHHTT-.EEEEEESSGGHHHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGa.evvltdlneeakkrveelaeelgae.vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Ga +g+G+ ++ka+a+    +v  t ++ +      + + +++ + +  +DV++e++  +l++ ++ k  ++Di+v  ag+ p+  ++f e ++e  
    KKY18544.1   8 GATRGLGASLVKAFAQDAStDVYGTSRSSSI-----PTEPNGDIHwITSIDVASESAGSKLADSLKGK--TIDIVVITAGYFPD--ESFDEPNWEAE 95 
                   8889999999999987633034444444433.....444444445469*****************987..7*************..*********** PP

                   HHHHHHHTHHHHHHHHHHHH..HCTSCCEEEEEEEGGGTSBSTTTT......HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT CS
  adh_short_C2  96 draldvnlyslfllakaalp..lmkeggsivnlssvgaervvpnyn......aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg 184
                    ++  ++  + + ++ a+++  ++++g++ + +ss ++++++ + +      a +a+Kaal+ + + l  +l +kgi v  v+pg+++T++++++  
    KKY18544.1  96 IKTYTISSIGPVFIVAALVKagILQKGSKAILVSSEAGSITLRDESegggkyAHHASKAALNMVGKLLSFDLKDKGIAVGLVHPGFMRTEMTKSVG- 191
                   ******************999******999***9999998866554455667899**************************************996. PP

                   HHHHHHH CS
  adh_short_C2 185 fdellee 191
                   fd++ +e
    KKY18544.1 192 FDQFWDE 198
                   7777655 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   5.5e-07    0.0025       2     101 ..       3      91 ..       2     134 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 5.5e-07
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEE.E----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaeve.vvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkllee 99 
                 ++li+G++ gLG +l++  a+++ + +  +sRs++            e  + +++ + ++Dv++++a ++l +++k  +++i  v+ +Ag + d+ ++e
  KKY18544.1   3 SVLIIGATRGLGASLVKAFAQDASTDVYGTSRSSSIPT---------EP-NGDIHwITSIDVASESAGSKLADSLK--GKTIDIVVITAGYFPDESFDE 89 
                 68*******************************43222.........22.33444145688999999999888887..566888888888888888877 PP

                 -- CS
          KR 100 mt 101
                  +
  KKY18544.1  90 PN 91 
                 55 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   8.9e-06      0.04       1      74 [.       4      81 ..       4     142 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.9e-06
                EEEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC.EEEE--TT-HH...HHHHHHHHHT-SEEEE--S- CS
   Epimerase  1 ilVtGatGfiGsalvkallekgye.vigldrlssasntarledl.elveldltdrs...alerlfkeeqpdavihlAav 74
                +l++Gat  +G+ lvka+++   + v g +r  s+ +t+ + d+  ++ +d+  +s   +l++ +k + +d+v+  A++
  KKY18544.1  4 VLIIGATRGLGASLVKAFAQDASTdVYGTSRS-SSIPTEPNGDIhWITSIDVASESagsKLADSLKGKTIDIVVITAGY 81
                79*****************9995559999999.5555555566658999999998855578888888899**9999873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.31s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1676.48
//
Query:       KKY18545.1  [L=242]
Description: putative cell division control protein cdc31 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-16   58.6   3.2    3.9e-06   26.0   0.1    3.7  4  EF-hand_1  EF hand
    3.9e-16   59.2   2.0      1e-08   35.5   0.2    2.2  2  EF-hand_7  EF-hand domain pair
    1.1e-15   56.2   2.1    1.5e-06   27.7   0.2    3.7  4  EF-hand_6  EF-hand domain
    2.3e-10   40.2   4.1    1.8e-07   30.9   0.4    2.8  3  EF-hand_8  EF-hand domain pair
    0.00019   20.8   6.6      0.061   12.8   0.1    3.2  4  EF-hand_5  EF hand
     0.0038   17.2   0.1      0.089   12.7   0.0    2.3  2  EF-hand_4  Cytoskeletal-regulatory complex EF hand
  ------ inclusion threshold ------
      0.011   16.0   0.0        1.4    9.2   0.0    2.3  2  DUF3572    Protein of unknown function (DUF3572)
       0.11   13.5   1.0       0.18   12.8   0.4    1.6  2  DUF4834    Domain of unknown function (DUF4834)


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.1   1.8e-09   3.9e-06       1      29 []      90     118 ..      90     118 .. 0.95
   2 ?   -1.9   0.0       1.5   3.3e+03      17      27 ..     122     132 ..     121     133 .. 0.82
   3 !   24.0   0.1   7.5e-09   1.7e-05       1      28 [.     178     205 ..     178     206 .. 0.92
   4 !    7.2   0.1    0.0018       4.1       1      24 [.     215     238 ..     215     241 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.8e-09
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkkl 29 
                 e++e+F++fD D+d ++d+ E++ +l++l
  KKY18545.1  90 EINEAFQLFDLDRDKHLDYHELRVALRAL 118
                 799**********************9975 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.5
                 EEHHHHHHHHH CS
   EF-hand_1  17 IdfeEfkellk 27 
                 +++ E++++l+
  KKY18545.1 122 LSKPELVQILN 132
                 7899***9985 PP

  == domain 3  score: 24.0 bits;  conditional E-value: 7.5e-09
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e++++F++fD+ g G+Id+++++++ ++
  KKY18545.1 178 EIERAFELFDVSGKGYIDLDDLRRVARE 205
                 799********************99775 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0018
                 HHHHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfke 24 
                 el+ +++efD  g G + +e f+ 
  KKY18545.1 215 ELRAMIDEFDLEGIGGVGKEAFIG 238
                 799**********99999888865 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   2.8e-08   6.3e-05       1      50 [.      88     131 ..      88     136 .. 0.89
   2 !   35.5   0.2   4.5e-12     1e-08       2      62 ..     177     232 ..     176     240 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.8e-08
   EF-hand_7   1 eeklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellf 50 
                 +e++ eaF+++D d+d +ld+ el+ +lr        g+ ls+ el +++
  KKY18545.1  88 KEEINEAFQLFDLDRDKHLDYHELRVALR------ALGFTLSKPELVQIL 131
                 5899*********************9999......899999998877665 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 4.5e-12
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvis 62 
                 e++++aF+++D+ g gy+d ++l+r+ r        +  l +eel+++++efD+ + G + 
  KKY18545.1 177 EEIERAFELFDVSGKGYIDLDDLRRVARE-----LQETGLEEEELRAMIDEFDLEGIGGVG 232
                 899*************************9.....5555567999*********99877665 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.2   6.6e-10   1.5e-06       1      31 []      90     119 ..      90     119 .. 0.96
   2 ?    0.0   0.0       0.5   1.1e+03      16      28 ..     121     133 ..     121     139 .. 0.84
   3 !   24.5   0.1   6.7e-09   1.5e-05       1      27 [.     178     204 ..     178     210 .. 0.91
   4 ?   -0.7   0.0      0.82   1.8e+03       2      11 ..     216     225 ..     211     239 .. 0.59

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 6.6e-10
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrkalg 31 
                 e++eaF+lfD d+d ++d++Elr alr alg
  KKY18545.1  90 EINEAFQLFDLDRDKHLDYHELRVALR-ALG 119
                 699************************.887 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.5
   EF-hand_6  16 kidaeElrkalrk 28 
                 ++++ El+++l++
  KKY18545.1 121 TLSKPELVQILNQ 133
                 58999******94 PP

  == domain 3  score: 24.5 bits;  conditional E-value: 6.7e-09
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 e+++aF+lfD++g G+id ++lr++ r
  KKY18545.1 178 EIERAFELFDVSGKGYIDLDDLRRVAR 204
                 6899*******************9988 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.82
   EF-hand_6   2 lreaFklfDk 11 
                 lr+  ++fD 
  KKY18545.1 216 LRAMIDEFDL 225
                 3444445555 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.2   0.00037      0.84      25      52 ..      88     115 ..      87     118 .. 0.90
   2 ?    2.3   0.0     0.066   1.5e+02       6      29 ..     107     129 ..     103     133 .. 0.78
   3 !   30.9   0.4   7.9e-11   1.8e-07       2      49 ..     191     237 ..     177     239 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00037
   EF-hand_8  25 eeevdilfrefDtdgdGkisfeEFcvll 52 
                 +ee+ + f +fD+d+d ++++ E  v l
  KKY18545.1  88 KEEINEAFQLFDLDRDKHLDYHELRVAL 115
                 79*******************9998876 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.066
   EF-hand_8   6 treelrrilrilglkkglseee.vd 29 
                 + +elr +lr+lg    ls+ e v+
  KKY18545.1 107 DYHELRVALRALGFT--LSKPElVQ 129
                 668******999988..99887444 PP

  == domain 3  score: 30.9 bits;  conditional E-value: 7.9e-11
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFc 49 
                 kg+I+ ++lrr +r l+   gl eee++++++efD++g G +++e F+
  KKY18545.1 191 KGYIDLDDLRRVARELQET-GLEEEELRAMIDEFDLEGIGGVGKEAFI 237
                 8**********88977655.7**********************99886 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   0.00013      0.29       1      22 [.      91     112 ..      91     115 .. 0.82
   2 ?   -2.8   0.0       2.4   5.5e+03      16      23 ..     122     129 ..     121     131 .. 0.77
   3 !   12.8   0.1   2.7e-05     0.061       3      24 ..     181     202 ..     179     203 .. 0.90
   4 ?   -2.4   0.2       1.8     4e+03      19      24 ..     214     219 ..     212     225 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00013
                 HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELk 22 
                 ++++Fq +Dl++D +++  EL+
  KKY18545.1  91 INEAFQLFDLDRDKHLDYHELR 112
                 6889*********777777775 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.4
                 E-HHHHHH CS
   EF-hand_5  16 IskeELkt 23 
                 +sk EL +
  KKY18545.1 122 LSKPELVQ 129
                 8999*976 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 2.7e-05
                 HHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELktl 24 
                  +F+ +D+ g G+I+ + L+++
  KKY18545.1 181 RAFELFDVSGKGYIDLDDLRRV 202
                 57*****************997 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1.8
                 HHHHHH CS
   EF-hand_5  19 eELktl 24 
                 eEL+++
  KKY18545.1 214 EELRAM 219
                 566654 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0     4e-05     0.089      41      71 ..      87     117 ..      68     138 .. 0.83
   2 ?    1.9   0.0     0.092   2.1e+02       8      65 ..     178     199 ..     168     241 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4e-05
   EF-hand_4  41 eedklekiwdladidedgkldfeefciamrl 71 
                 +++++++ ++l d+d d +ld++e+ +a+r 
  KKY18545.1  87 QKEEINEAFQLFDLDRDKHLDYHELRVALRA 117
                 456778889*******************995 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.092
   EF-hand_4   8 eikkyweifsglkpednkltgdkvapvlknskleedklekiwdladidedgkldfeef 65 
                 e                                    +e+ ++l d+   g +d++++
  KKY18545.1 178 E------------------------------------IERAFELFDVSGKGYIDLDDL 199
                 4....................................444455555555555554443 PP

>> DUF3572  Protein of unknown function (DUF3572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.021        47       7      23 ..     113     129 ..     110     137 .. 0.86
   2 ?    9.2   0.0   0.00063       1.4      18      42 ..     198     222 ..     192     227 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.021
     DUF3572   7 lAlaaLawlagdpellg 23 
                 +Al+aL++ +++pel++
  KKY18545.1 113 VALRALGFTLSKPELVQ 129
                 8*************986 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00063
     DUF3572  18 dpellgrFLaltGlepadLRaaaae 42 
                 d +++ r L++tGle+++LRa+++e
  KKY18545.1 198 DLRRVARELQETGLEEEELRAMIDE 222
                 56788999**************987 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   7.9e-05      0.18      33      98 ..      43     111 ..      28     112 .. 0.53
   2 ?   -2.6   0.0       5.1   1.1e+04      72      94 ..     172     195 ..     163     197 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.9e-05
     DUF4834  33 gsrkkss.ksaqkqfgnstnsnqqksq...srsetkeegeiieeersekeakrk.kiFekdeGEYVdFEEv 98 
                 ++r     +++q+q + +++++q +       +++ +  e+i+e+++e+ +++  ++F+ d +   d+ E 
  KKY18545.1  43 SRRADHGaQQQQQQARPQQGGQQPQ-PgraGFEREFNALEEIQEDQKEE-INEAfQLFDLDRDKHLDYHEL 111
                 3333322123333333333333222.24442233333334444444444.67778*************995 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.1
     DUF4834  72 eersekeakrk.kiFekdeGEYVd 94 
                 e+++++e++r   +F+ +   Y+d
  KKY18545.1 172 ERDPREEIERAfELFDVSGKGYID 195
                 566677788888899888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       862  (0.0480785); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 1615.20
//
Query:       KKY18546.1  [L=496]
Description: putative dna polymerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-14   53.6   0.3    1.8e-13   51.2   0.1    2.1  2  IMS_C     impB/mucB/samB family C-terminal domain
     0.0015   18.5   0.0     0.0039   17.2   0.0    1.7  2  IMS       impB/mucB/samB family
  ------ inclusion threshold ------
       0.14   12.6   0.1       0.87   10.0   0.1    2.2  2  IMS_HHH   IMS family HHH motif
       0.15   12.1   0.7       0.33   11.0   0.7    1.5  1  DUF1128   Protein of unknown function (DUF1128)


Domain annotation for each model (and alignments):
>> IMS_C  impB/mucB/samB family C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.45     2e+03      25      55 ..      55      90 ..      34     135 .. 0.57
   2 !   51.2   0.1   4.1e-17   1.8e-13       4     113 ..     219     376 ..     216     380 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.45
       IMS_C 25 k....lkkelr.eLaeelarrLrdkglvartitlkl 55
                +    l+++l  +La+ l  +L +k+ +  t+ ++ 
  KKY18546.1 55 EntlrLRLVLGsHLATHLRYQLDEKHGYIATVGIST 90
                244334444448888888888877776666666555 PP

  == domain 2  score: 51.2 bits;  conditional E-value: 4.1e-17
       IMS_C   4 arpepksissektfpepydesk.lkkelreLaeelarrL.....rdkgl...................vartitlklrys..............dfh.a 62 
                 a+++p +is+e+++ +  d ++ +kkel +L+++l++r+     ++++l                   +a++ tl+l ++              + + +
  KKY18546.1 219 AKKVPSQISIEDSYVR-LDTIEeVKKELLMLSQSLIKRMqldltEEDDLakqametkdeapngllrrwLAHPKTLRLSTRprpplnpdgtrprtF-NrI 315
                 67899**********8.344445****************77777333335556666677777777888777777777666668888887776643.36* PP

       IMS_C  63 srsatL.........prptsdtreileaalkLlrrlide.pglpirligvsasnlvekaes 113
                 srs+++         +    + r++ e +++++r+l++e +g+ ++l++++++n++e a++
  KKY18546.1 316 SRSCPMpnfvfnlreSIEARANRLLNEVLMSCFRKLHPEkSGWILSLLNIACTNMAETASN 376
                 ******9999999853355899999*******************************77665 PP

>> IMS  impB/mucB/samB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   8.7e-07    0.0039     114     149 ..      55      99 ..       7     100 .. 0.80
   2 ?   -2.4   0.0      0.94   4.2e+03     101     101 ..     257     257 ..     218     337 .. 0.51

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.7e-07
                 S.........HHHHHHHHHHHHHHHH---EEEEEESSHHHHHHHH CS
         IMS 114 e.........gaalakelrkaikeelgltvsiGiasnkllAKlas 149
                 e         g++la  lr ++ e+ g+ +++Gi++nk+l+Kl+ 
  KKY18546.1  55 EntlrlrlvlGSHLATHLRYQLDEKHGYIATVGISTNKILSKLVG 99 
                 1444444555899*****************************985 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.94
                 E CS
         IMS 101 y 101
                  
  KKY18546.1 257 Q 257
                 2 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00019      0.87       7      30 ..     127     150 ..     126     152 .. 0.87
   2 ?   -1.2   0.0      0.71   3.2e+03      16      25 ..     179     188 ..     174     191 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00019
     IMS_HHH   7 fLwplpitkipGiGgklgekLekl 30 
                 f+   +i+k+pGiG kl +k+++l
  KKY18546.1 127 FMDGHDIGKVPGIGFKLSQKIRAL 150
                 566789*************98876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.71
     IMS_HHH  16 ipGiGgklge 25 
                  pG+G++l e
  KKY18546.1 179 YPGMGPRLLE 188
                 69****9975 PP

>> DUF1128  Protein of unknown function (DUF1128)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.7   7.4e-05      0.33      13      42 ..     238     267 ..     235     269 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.4e-05
     DUF1128  13 ieeikekLkmvnaavlkaedfseekyedlk 42 
                 iee+k++L m++++++k  ++++++ +dl 
  KKY18546.1 238 IEEVKKELLMLSQSLIKRMQLDLTEEDDLA 267
                 9***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3273.60
//
Query:       KKY18547.1  [L=430]
Description: putative hydantoin utilization protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-31  110.1   0.1    1.8e-31  109.5   0.1    1.3  1  Peptidase_M20  Peptidase family M20/M25/M40
    0.00031   20.6   0.1    0.00067   19.5   0.1    1.6  1  M20_dimer      Peptidase dimerisation domain
    0.00039   20.2   0.0    0.00067   19.4   0.0    1.4  1  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   0.1     3e-35   1.8e-31       1     206 [.      72     417 ..      72     418 .. 0.90

  Alignments for each domain:
  == domain 1  score: 109.5 bits;  conditional E-value: 3e-35
                    EEEEES-BSSTTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT.......THHHHHHHHHHT.. CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxx.. RF
  Peptidase_M20   1 llgsHlDvVpeeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr.......gGakalleglee.. 87 
                    ++gsHlD++p    +g           G+++G        gv ++le+lr++++++++++g++ ++++++EEg+r       +G  a +++le+  
     KKY18547.1  72 MMGSHLDTQP----TG-----------GRYDGI------LGVTSGLEVLRTIHENNYETEGSVGVINWTNEEGARfpmtcaaSGVYAGIHSLEKaw 146
                    689*******....67...........999999......**********************************99999998866666666555347 PP

                    ..................................TTCESEEEEEEEESSSBTCHSTETEEEE.................................. CS
                    ..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................. RF
  Peptidase_M20  88 ..................................rekvdavfelhieepgileagklaigvv.................................. 115
                                                      ++++ a felhie+++ile++k  igvv                                  
     KKY18547.1 147 ilpeitpsqdgkrhtmkeelerigflgsvpasfeAQPIAAHFELHIEQGPILEDEKRRIGVVvggqayrwfqitvrgrdchagttpfnarqdtils 242
                    777799999999999999***************999************************************************************ PP

                    .........................................................................EEEEEEEEEESHEEEC.CHHHHH CS
                    .........................................................................xxxxxxxxxxxxxxxx.xxxxxx RF
  Peptidase_M20 116 .........................................................................kvevelleggapvtln.dsplvk 137
                                                                                              ++ve+ e  ++++++ ++++++
     KKY18547.1 243 aakmivesnsiakvhdglattgiiemkpgsintmahtvqftldirhhsdsklseietacrkaftrvaaeeserGCTVEWAELTNSPAVEfHPDCIA 338
                    ************************************************************************7588888855555555556***** PP

                    HHHHHHHHHH.T.......SC.EEEEEESSSBHTHHHH.TTTEEEEEEE.SSGGCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxx.x.......xx.xxxxxxxxxxxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 138 alaeaaeelf.g.......ek.velivsgpggtdarff.agiptvmifg.pgsglaHspnEyvdledlekgikvlarlle 206
                    a++++a+e++          +  +++vsg +g+d++++  + pt mif  + +g++H+p+Ey+++ed++ g++vl  +++
     KKY18547.1 339 AVEASAKEACaDlpmtasdGSlIKRMVSG-AGHDSCYLtRKCPTSMIFTvTKNGMSHTPEEYCSPEDCALGAQVLLGAVL 417
                    ********997355555443358999***.********6666*9999994557**********************98875 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   1.1e-07   0.00067       7     107 ..     215     311 ..     209     313 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.1e-07
                 EEEEEEEE-B-EEGG.-TTTTB-.HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-C..CCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHH CS
   M20_dimer   7 aggkitvkgkagHsg.apgagaN.AieklarllaeledeegdiaeerslprttlnvtgiegGs..aknvipdeaeakidiRllpgedpeevleeieeil 101
                  ++ itv+g+++H+g  p +++   i  +a+++ e ++  +         +  l+ tgi +    ++n+ + ++++++diR    +++ e++++ ++++
  KKY18547.1 215 RWFQITVRGRDCHAGtTPFNARQdTILSAAKMIVESNSIAKV--------HDGLATTGIIEMKpgSINTMAHTVQFTLDIRHHSDSKLSEIETACRKAF 305
                 69*************988888766***********9999554........45777777777777*******************************9999 PP

                 TSCCST CS
   M20_dimer 102 ekeape 107
                  ++a+e
  KKY18547.1 306 TRVAAE 311
                 998876 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.1e-07   0.00067       1      73 [.      56     123 ..      56     175 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.1e-07
                    EEEEEESTTCE.SEEEEEEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSG CS
  Peptidase_M28   1 Nviatlegkat.devlllgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEa 73 
                    N +a  +gk++ +  +++g+H+D+ ++       G  D   gv + Le++r++ +++ + + +v ++ ++ EE 
     KKY18547.1  56 NMMAVRPGKNSiAPPVMMGSHLDTQPT---G---GRYDGILGVTSGLEVLRTIHENNYETEGSVGVINWTNEEG 123
                    667778889988889***********8...4...6789999**************99999*************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 2717.67
//
Query:       KKY18548.1  [L=310]
Description: putative tetrahydroxynaphthalene reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-54  185.6   0.7    1.6e-54  184.9   0.7    1.2  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    1.6e-49  168.0   2.2    2.1e-49  167.6   2.2    1.1  1  adh_short     short chain dehydrogenase
    5.7e-11   42.6   0.3    7.9e-11   42.2   0.3    1.1  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.9   0.7   2.8e-58   1.6e-54       1     231 [.      62     306 ..      62     307 .. 0.90

  Alignments for each domain:
  == domain 1  score: 184.9 bits;  conditional E-value: 2.8e-58
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTT.SE.E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-H CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea..kkrveelaeelg.ae.v.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsr 92 
                   Ga +g+Gr++A +la++Ga+vv+ ++n ++  +  v+e+++  + ++ + ++++V++  ++  l+e+++e fg+lDi++ n g++    g+f ++++
    KKY18548.1  62 GAGRGMGRETALELARRGAKVVVNYANSSEaaDTVVAEIKAMRKgSDaIaIKANVSKVPEIVMLFEKAMEYFGRLDIVCSNSGVVSF--GHFKDVEE 156
                   889************************99984555666665444355437*************************************..******** PP

                   HHHHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEG.GGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT.... CS
  adh_short_C2  93 eefdraldvnlyslfllakaalplmkeggsivnlssv.gaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg.... 184
                   eefdr++++n+++ f +a++a +++  gg+i+ + s+ g+ ++vp +++y+a+K+a+e ++r++A ++g+k+i+vNa++pg ikT++  ++ +    
    KKY18548.1 157 EEFDRVFQINTKGQFFVAREAYKHLSVGGRIILMGSItGQAKGVPRHTVYSASKGAIETFVRCMAIDCGEKKITVNAIAPGGIKTDMYHAVCReyip 253
                   **********************************888355588********************************************6554322333 PP

                   ......HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEEST CS
  adh_short_C2 185 ......fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDg 231
                         +d++ e+++ ++p +r+g+p +v ++++fLas++ ++++G+++ vDg
    KKY18548.1 254 ggdkmnNDQVDEYAATWSPCNRVGQPIDVSRVTCFLASKDGEWVNGKVIGVDG 306
                   35566577799999**************************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.6   2.2   3.6e-53   2.1e-49       1     189 [.      56     246 ..      56     251 .. 0.97

  Alignments for each domain:
  == domain 1  score: 167.6 bits;  conditional E-value: 3.6e-53
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGC CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfsel 96 
                 kv+lvtGa++G+Gr++a ela++Gakvvv +++s+e++ +v++e+k+   g++a+ai+++v++  e+  l+eka++ +g+ld++  N G+  +g f+++
  KKY18548.1  56 KVALVTGAGRGMGRETALELARRGAKVVVnYANSSEAADTVVAEIKAMrkGSDAIAIKANVSKVPEIVMLFEKAMEYFGRLDIVCSNSGVVSFGHFKDV 154
                 89*********************************************999999********************************************** PP

                 SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG.TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short  97 seeewervievNltgvflltravlpamlkqssGrIvnvsSvag.kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 +eee++rv+++N +g f ++r++++++    +GrI+ ++S++g  ++v+  ++YsAsK+a++ ++r++a +  +++i+vna+aPG+++Tdm ++
  KKY18548.1 155 EEEEFDRVFQINTKGQFFVAREAYKHLS--VGGRIILMGSITGqAKGVPRHTVYSASKGAIETFVRCMAIDCGEKKITVNAIAPGGIKTDMYHA 246
                 **************************77..9************7789********************************************876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.3   1.3e-14   7.9e-11       3     162 ..      58     219 ..      56     233 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 1.3e-14
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                  l+tG+  g+G+e+a  la++ga+ +v  + s++a ++  a+i+++++ g +  +++a vs+  ++  l+e++ + ++++  v    gv+  + +++++
  KKY18548.1  58 ALVTGAGRGMGRETALELARRGAKVVVNYANSSEAADTVVAEIKAMRK-GSDAIAIKANVSKVPEIVMLFEKAMEYFGRLDIVCSNSGVVSFGHFKDVE 155
                 59******************************7666666666666654.99999********************************************* PP

                 HHHHHHHHTTTTHHHHHHH.HHTTT.S--SEEEEEEEHHH.HH--TT-HHHHHHHHHHHHHHHH CS
          KR 102 aedleqvlapKvkGawnLh.elled.esldffvlfSSiag.llgsagqanYaaaNaflDalaey 162
                 +e++++v++   kG   +  e+ ++ +    ++l+ Si g   g + ++ Y+a    ++++++ 
  KKY18548.1 156 EEEFDRVFQINTKGQFFVArEAYKHlSVGGRIILMGSITGqAKGVPRHTVYSASKGAIETFVRC 219
                 **************998862566664455678999999876889*********99999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 1945.24
//
Query:       KKY18549.1  [L=866]
Description: putative g-patch domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-84  283.5   7.5    2.9e-84  282.9   7.5    1.3  1  GCFC           GC-rich sequence DNA-binding factor-like prote
    6.1e-17   61.2   0.9    6.1e-17   61.2   0.9    2.9  3  G-patch        G-patch domain
    3.2e-10   40.3   9.2    3.2e-10   40.3   9.2    2.6  2  TIP_N          Tuftelin interacting protein N terminal
    4.2e-07   30.0   1.3    1.2e-06   28.5   0.3    2.4  2  G-patch_2      G-patch domain
  ------ inclusion threshold ------
      0.017   14.4   0.0      0.028   13.7   0.0    1.2  1  T4_deiodinase  Iodothyronine deiodinase
       0.14   12.0   0.3       0.72    9.8   0.2    2.1  2  Takusan        Takusan


Domain annotation for each model (and alignments):
>> GCFC  GC-rich sequence DNA-binding factor-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.9   7.5   9.8e-88   2.9e-84       1     277 []     408     687 ..     408     687 .. 0.98

  Alignments for each domain:
  == domain 1  score: 282.9 bits;  conditional E-value: 9.8e-88
        GCFC   1 leeiaekFeelkekyleeykeaelselavslvaPllrealleWePLkdptalvdnlkswrklLeeevkekekkrkesttpyetllwelwlpsvrssvan 99 
                 +e++ +++e l+ ++ +e++e  lse av+++ P++r+++ eW+PL+ p +lv  l+++r +L+ + + +   r+++tt ye+++ + wlp+vr+ ++n
  KKY18549.1 408 WEQVVASLEILQLEHADEMDELGLSEAAVAVIEPMFRKEMDEWQPLDRPEYLVTTLRRLRTILGFS-SDTPRPRQKVTTFYESMIVSHWLPRVRTVLVN 505
                 6889999********************************************************944.6778889999********************** PP

        GCFC 100 ewdprdpdpmlalleaWkplLPefvldnlleqlilpkLeaaveeWdPlskkqttrlvpihswifpwlpllgeerlep....glvsdirrklrqaLdaWd 194
                 ewd+++p+p++alle Wk++LPef++ ++++q+ l+kL++av+eW+P+skk++++ +p h+w+fpwlp+l+ ++l++    gl++++rrk+r++Ld+Wd
  KKY18549.1 506 EWDVHKPSPAIALLEGWKDVLPEFIYGQVMDQVLLRKLSTAVREWKPRSKKEKHSRSPPHVWLFPWLPYLQPDQLDTsnssGLMAEVRRKFRHVLDRWD 604
                 *************************************************************************************************** PP

        GCFC 195 psrsalaiLkpWkdvfspaewdklllrhilpklaralq.efeinpkqqslellenvlkWkdllspsvlaeLlekeffpkwlqvl 277
                 +s++++ +L+ Wk+vf+  ++d ll++h+lp+la +l+  f++np++q++++lenv+kWkd+++ps++ eLl  effpkw+++l
  KKY18549.1 605 ISAGVIDGLHHWKEVFRG-DMDVLLRNHLLPRLAAHLRtRFVMNPQDQDITPLENVFKWKDMFRPSIIGELLAVEFFPKWHETL 687
                 *****************9.**************************************************************987 PP

>> G-patch  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.2      0.76   2.3e+03      17      25 ..      69      79 ..      62      80 .. 0.74
   2 ?   -0.2   0.0      0.32   9.7e+02      18      30 ..     127     139 ..     124     146 .. 0.85
   3 !   61.2   0.9   2.1e-20   6.1e-17       3      44 ..     184     225 ..     182     226 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.76
     G-patch 17 GqGLG..kkeq 25
                G+GLG  k++q
  KKY18549.1 69 GKGLGfvKSQQ 79
                99***986665 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.32
     G-patch  18 qGLGkkeqGiaeP 30 
                 qGLG + +++ +P
  KKY18549.1 127 QGLGANRNRNDSP 139
                 8****99998877 PP

  == domain 3  score: 61.2 bits;  conditional E-value: 2.1e-20
     G-patch   3 niGvkmLqkmGWkpGqGLGkkeqGiaePieakikkdraGlGa 44 
                 ++++km++kmG+ +GqGLG ++qGi++Pie+k ++++aG+Ga
  KKY18549.1 184 SFAAKMMAKMGYVEGQGLGASGQGIINPIEVKLRPQGAGVGA 225
                 899**************************************9 PP

>> TIP_N  Tuftelin interacting protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   9.2   1.1e-13   3.2e-10       3      97 ..      10     103 ..       6     108 .. 0.74
   2 ?    1.0   1.3      0.19   5.6e+02      39      55 ..     249     265 ..     224     290 .. 0.60

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.1e-13
       TIP_N   3 emerfei.tdydldnefnykrrr.rr...qtKeeaiYGvFaedDsddeeeerrskkrsrrgkkdytkpvnFvsggikkeakedkekddkkdeeeeeeee 96 
                 ++++f   ++ +  +ef+  rr+ r+   +++e+a++G+F++ Ds+de+ ++r+k ++ rgk     +  Fv+++++ e+ e++ k++++d++  +++e
  KKY18549.1  10 DQDDFVFpSTDPGVDEFEHLRRKrRKtgrDARESAALGIFGS-DSEDERPGQRWKTKDLRGK-----GLGFVKSQQQPENMEESRKQSDDDSDAMSDDE 102
                 56677776666688888888777344888************6.******************8.....********776665555555444444444433 PP

       TIP_N  97 e 97 
                 +
  KKY18549.1 103 A 103
                 3 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.19
       TIP_N  39 edDsddeeeerrskkrs 55 
                 ed s++e+++rr++k++
  KKY18549.1 249 EDSSEEERKRRRRAKEK 265
                 32333333333333332 PP

>> G-patch_2  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.1   9.2e+03      24      40 ..      71      87 ..      70     111 .. 0.66
   2 !   28.5   0.3   3.9e-10   1.2e-06      16      59 ..     184     227 ..     183     229 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.1
   G-patch_2 24 GMGWkegqgigknkkgr 40
                G+G+ ++q++ +n +++
  KKY18549.1 71 GLGFVKSQQQPENMEES 87
                77887666665554443 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 3.9e-10
   G-patch_2  16 eFGaAlLrGMGWkegqgigknkkgrvkpeepkrRpgrlGLGakp 59 
                 +F a ++  MG+ egqg g +++g ++p+e+k Rp+++G Ga +
  KKY18549.1 184 SFAAKMMAKMGYVEGQGLGASGQGIINPIEVKLRPQGAGVGAVK 227
                 59999************************************976 PP

>> T4_deiodinase  Iodothyronine deiodinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   9.5e-06     0.028     122     150 ..     787     815 ..     773     822 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.5e-06
  T4_deiodinase 122 safkrlveefssvadfliiyieeahpsdG 150
                    ++fk lve+++  ad+++i + eah++ G
     KKY18549.1 787 PTFKDLVEDWCAAADLMLIPLREAHAATG 815
                    68************************988 PP

>> Takusan  Takusan
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2   0.00024      0.72      15      74 ..     365     429 ..     356     433 .. 0.79
   2 ?   -1.5   0.0      0.77   2.3e+03      40      66 ..     470     493 ..     463     494 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00024
     Takusan  15 akkklEeLkleLrkitreRdELrdiLalytegslndr.....psvrlnpeyekLklqhekvMsdl 74 
                  + ++E++++e+ k+++e d L  i +  +  +++       +      ++e+L+l+h   M +l
  KKY18549.1 365 IEAQEEQITSEIDKVQQESDHLLAIINSLSDLNIDPGdhsafQWEQVVASLEILQLEHADEMDEL 429
                 4557899*******************999877666556777777788888899999998888665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.77
     Takusan  40 LalytegslndrpsvrlnpeyekLklq 66 
                 L +++ +    rp ++  ++ye + + 
  KKY18549.1 470 LGFSSDT---PRPRQKVTTFYESMIVS 493
                 4444333...3499********99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       937  (0.0522617); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.48
# Mc/sec: 5454.15
//
Query:       KKY18550.1  [L=231]
Description: putative mn superoxide dismutase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-36  124.3   0.9    2.5e-36  123.9   0.3    1.5  2  Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal do
    1.1e-27   96.4   1.6    1.7e-27   95.7   1.6    1.3  1  Sod_Fe_N  Iron/manganese superoxide dismutases, alpha-hairpin


Domain annotation for each model (and alignments):
>> Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.84   7.5e+03      75      79 ..      69      73 ..      44      96 .. 0.63
   2 !  123.9   0.3   2.8e-40   2.5e-36       1     102 []     127     228 ..     127     228 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.84
                THHHH CS
    Sod_Fe_C 75 Yyldy 79
                Y+  y
  KKY18550.1 69 YVNSY 73
                22222 PP

  == domain 2  score: 123.9 bits;  conditional E-value: 2.8e-40
                 --HHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEETT.TEEEEEEEETTTBGGGGTTCEEEEEE-SGGGTHHHHTT-HHHHHHHHGGGBBHHH CS
    Sod_Fe_C   1 psgelaeaieedfgslekfkkefkaaalavfgsGwawLvldkk.kkLeivttknqdnplvkeakplLalDvwehAYyldyqnkradYieafwnvvnWke 98 
                 psg+l + iee++gsle+fk +f++a ++++gsGwawLv+d++ +++ i t +nqd p+v + kplL++D wehAYyl+yqn++a+Y++a+w+vvnWk+
  KKY18550.1 127 PSGALGKVIEETYGSLEDFKGKFNTALAGIQGSGWAWLVKDTQtGNIGIKTYANQD-PVVGQFKPLLGIDAWEHAYYLQYQNRKAEYFKAIWEVVNWKA 224
                 899*************************************998679*999999999.6888999*********************************** PP

                 HHHH CS
    Sod_Fe_C  99 veer 102
                 +e+r
  KKY18550.1 225 AEKR 228
                 *987 PP

>> Sod_Fe_N  Iron/manganese superoxide dismutases, alpha-hairpin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   1.6   1.9e-31   1.7e-27       3      82 .]      38     117 ..      36     117 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.7 bits;  conditional E-value: 1.9e-31
                 -----SS-TTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHHCHHHHCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTB- CS
    Sod_Fe_N   3 eLpeLpYaydaLePhisketlelHhdkHhktYvnnlNkalekleeakkkleelvlkklekalrnnagghvnHslfwknls 82 
                 +Lp+L Y+y aLeP +s +++elHh+ Hh+tYvn +N+a ekl+ a++k++  ++ +l+  +++++gghvnH+lfw+nl+
  KKY18550.1  38 TLPDLSYDYGALEPAVSGKIMELHHKMHHNTYVNSYNDATEKLAAAEAKDDIAAKIALQPLINFHGGGHVNHTLFWENLA 117
                 79****************************************************9***********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 1405.19
//
Query:       KKY18551.1  [L=222]
Description: putative extracellular proline-serine rich protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-15   56.1   4.6    4.6e-15   56.1   4.6    2.4  3  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc
  ------ inclusion threshold ------
      0.099   11.0   3.4       0.12   10.8   3.4    1.1  1  NUT           NUT protein
       0.23   11.4   0.4       0.49   10.4   0.4    1.5  1  PyrBI_leader  PyrBI operon leader peptide


Domain annotation for each model (and alignments):
>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   4.6   7.7e-19   4.6e-15       1      93 []      21     113 ..      21     113 .. 0.98
   2 ?   -0.6   0.6      0.39   2.3e+03      57      65 ..     133     141 ..     115     172 .. 0.54
   3 ?   -1.5   0.1      0.76   4.5e+03      13      31 ..     161     177 ..     148     184 .. 0.67

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 7.7e-19
  GPI-anchored   1 tsPssgevvtagkpvtitWkdsgtdpgtvtlvLcagssnnlksvktiasgiknsdgsytwtvpaslesggaYflqivsesne.giynySdrFti 93 
                   t+P++++++t g+ +++tW++++td +t+ ++L++  + +++  + +a+++++++g++++ vp+++ s+ ++++++v+++n+  iy++++ F i
    KKY18551.1  21 TNPTANSTLTKGTYYNLTWTSVDTDASTFGIYLVNFVN-WPPFYTLVATDVETATGKTSVRVPCDVDSAYGFQFNAVNGTNTyVIYAQTPDFYI 113
                   79************************************.*****************************************************87 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.39
  GPI-anchored  57 sytwtvpas 65 
                   ++t+tv++s
    KKY18551.1 133 TVTVTVSKS 141
                   333333221 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.76
  GPI-anchored  13 kpvtitWkdsgtdpgtvtl 31 
                    p ti Wk+      +vtl
    KKY18551.1 161 VPNTIGWKSG--YMNPVTL 177
                   5689999983..4555554 PP

>> NUT  NUT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.4     2e-05      0.12      54     152 ..      61     163 ..      44     202 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2e-05
         NUT  54 PrtplVagdggsgpsgagalnvivqvrte.grpvepvq.tqtlvltqaplnwsapgalcggaenpaplllaasavetivp...akvvggtqaseggWvl 147
                 P  +lVa+d  ++++g  +++v   v +  g + ++v+ t+t v+   + ++ ++ga c+  ++ ap   aa++v+ +v+   a+++++++a+  + + 
  KKY18551.1  61 PFYTLVATDV-ETATGKTSVRVPCDVDSAyGFQFNAVNgTNTYVIYAQTPDFYISGADCTDSTTAAPTCAAAATVTVTVSkspANATATANAEAKSTSC 158
                 5568999999.9999999999999999862556666653566665555558999***************999999888866555666666665555555 PP

         NUT 148 Glppq 152
                 G  p+
  KKY18551.1 159 GTVPN 163
                 54333 PP

>> PyrBI_leader  PyrBI operon leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   8.2e-05      0.49      21      38 ..       3      20 ..       1      24 [. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.2e-05
  PyrBI_leader 21 FFFPLltysrPLieGlFF 38
                  FF PL+ +  PL+ G+ F
    KKY18551.1  3 FFLPLIAFVAPLVAGMAF 20
                  9**************877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1750.06
//
Query:       KKY18552.1  [L=158]
Description: hypothetical protein UCRPC4_g04888 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-33  115.6   4.9    4.3e-19   68.7   0.0    2.0  2  Helo_like_N  Fungal N-terminal domain of STAND proteins
  ------ inclusion threshold ------
       0.03   14.1   0.2      0.049   13.4   0.2    1.4  1  DUF4534      Protein of unknown function (DUF4534)


Domain annotation for each model (and alignments):
>> Helo_like_N  Fungal N-terminal domain of STAND proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.0   4.8e-23   4.3e-19      66     138 ..       1      70 [.       1      82 [. 0.96
   2 !   47.5   2.5   1.5e-16   1.3e-12     139     208 ..      90     155 ..      88     156 .. 0.88

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 4.8e-23
  Helo_like_N  66 elalLklpllrCgkaCkefeqvikkcskkssksrtsfrDwakleymggdindfketlagYKsTisiaLgdinl 138
                  +++lLk   +rC+++ + fe ++k +++k   s+ts+rDw+k+e+ +gdin+f++t+ gYKsTi ++Lg+i++
   KKY18552.1   1 MFSLLKGLYDRCSHVYRGFEVSMKVFTEK---SKTSVRDWTKVEFRKGDINKFMDTVMGYKSTIVVGLGAITI 70 
                  5899*************************...89***********99************************98 PP

  == domain 2  score: 47.5 bits;  conditional E-value: 1.5e-16
  Helo_like_N 139 rkskvtaevleeykeliedttsdLeehLedideklealtekseeaseedeaelqrlkeEresteqcleic 208
                  +++k+++++lee++eli+dtt++L+ hL+ id+k+  lt++s++   ++++ ++ l++E+++t+qcl+i 
   KKY18552.1  90 HTAKLSQKALEEHSELIKDTTYNLKLHLQCIDDKMVLLTRESAT---TSDTGID-LTDEKAVTKQCLRIY 155
                  57899******************************999955554...4667777.99***********95 PP

>> DUF4534  Protein of unknown function (DUF4534)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   5.5e-06     0.049      33      73 ..      37      77 ..      12      82 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.5e-06
     DUF4534 33 edkssiyketksevssfiicyskkivillsliTilvscllL 73
                  k++  k   ++  + ++ y+++iv+ l  iTilv ++l+
  KKY18552.1 37 WTKVEFRKGDINKFMDTVMGYKSTIVVGLGAITILVIIFLV 77
                34666677777889999*******************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       944  (0.0526521); expected 358.6 (0.02)
Passed bias filter:                      626  (0.0349155); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 985.45
//
Query:       KKY18553.1  [L=400]
Description: putative glycosyltransferase family 71 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-38  131.5   0.2    1.7e-25   90.0   0.0    2.1  2  Mannosyl_trans3  Mannosyltransferase putative


Domain annotation for each model (and alignments):
>> Mannosyl_trans3  Mannosyltransferase putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0   9.3e-30   1.7e-25       1     135 [.      65     196 ..      65     213 .. 0.85
   2 !   40.0   0.1   1.6e-14   2.9e-10     183     274 ..     215     294 ..     201     295 .. 0.90

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 9.3e-30
  Mannosyl_trans3   1 gkGIVisgggkesll.alrlIkvLralgnkLPIeivikkeelekefcekilpaaeepkqevwfvn..a.kcvlnedylgkefkgfqnKalAllf 90 
                      g+GIV+++g+++s+  +  l+++L++lg+++P+ei +   e++  ++e++ +    ++++++f +  a +++ ++ y  + f+++q+K+ A++ 
       KKY18553.1  65 GRGIVVVAGHEKSIKrVRVLLRALERLGSQIPVEIHYWAHEINGTLREDLAS----MRPKMFFNDlsApSNIFKTAYNYN-FNNYQLKTAAVMN 153
                      89********66655055689*****************9*************....888888888443134555555555.************* PP

  Mannosyl_trans3  91 ssFeevllLDaDnvplknpdklFeseeYkktglllwkdrdlwkrs 135
                      s F e llLD+Dn+p+ +p++l+es  Yk++g+l+w  +d+ +++
       KKY18553.1 154 SRFAEPLLLDSDNIPVIDPESLYESSTYKEYGTLFW--PDIARTR 196
                      ************************************..**98877 PP

  == domain 2  score: 40.0 bits;  conditional E-value: 1.6e-14
  Mannosyl_trans3 183 ssesGlvvinKkkhlktLllalylnlygpk.ykllsqgaagegdKEtfwlaahvlgekYyfvkekaaaiGeltkkekkkseskeicsaqlghl 274
                       +esG+++++K++ +  L la+ +n  +p+ y+++ +g     dK++f +a+h+l+ kY f  +   ++G+l++         ++c+ +++++
       KKY18553.1 215 EQESGQMIVDKRRFFYHLQLAAWFNNKHPTyYNQFLLG-----DKDMFRFAWHALKTKYGFPGKWLTSVGTLSD--------GYYCGHSFAQH 294
                      69*************************99999999999.....****************************999........47777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2713.49
//
Query:       KKY18554.1  [L=563]
Description: putative lipase 3 precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-77  259.9   0.0    6.7e-77  259.5   0.0    1.0  1  COesterase     Carboxylesterase family
    0.00073   19.5   0.1     0.0086   16.0   0.1    2.1  1  Abhydrolase_3  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.5   0.0   7.4e-81   6.7e-77      23     488 ..      41     530 ..      30     548 .. 0.84

  Alignments for each domain:
  == domain 1  score: 259.5 bits;  conditional E-value: 7.4e-81
                 SEEEEEEEEESSB---GGGTTS--BE----SSEEECBS---BESEECSSSSSCGHHCHHH.................BES---EEEEEEESSSSSTTSS CS
  COesterase  23 kevdaFlGiPYAepPvgelRFkkPepaepwtgvrdAtkfspaCpqnaeksekeekeleaw.................vsEDCLyLnvytPkekkeakkk 104
                   v++FlGiP+A+ Pvg+lR k Pe+ ++  g++ At +++aCpq     + + ++l  +                   EDCL +nv  P+   ++++k
  KKY18554.1  41 GDVESFLGIPFAKSPVGSLRLKTPEALTESLGTITATLYGKACPQFYFSDNAGLDGLIPTaelglllntplfqtitnAGEDCLNINVQRPAGV-NSTSK 138
                 379***********************9999*****************999988887755599****************************996.88888 PP

                 EEEEEEE--STTTS-BGCGS-THHHHHHH.....TSEEEEE----HHHHH-B-SS..TTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHH CS
  COesterase 105 lPVlVwihGggfqtgsaseydgsaLaaeg.....nvivVtinYRlGvlGFlstgd..eeapGNvGllDqvlALrWVkenIasFGGdpervtlfGesAGa 196
                 lPVl+wi+Gggf+ gs+s+ydg++ ++e       vi V++nYR+G +GFl  ++   + + N+GllDq+l L+WV +nI++FGGdp++vt++GesAG+
  KKY18554.1 139 LPVLFWIFGGGFELGSNSMYDGTTWVSESisegkPVIYVAVNYRVGGFGFLPGKEilADGSANLGLLDQRLGLQWVADNIEAFGGDPDKVTIWGESAGS 237
                 8*********************9999998888889*****************9986677778************************************* PP

                 HHHHHHHHSGGGTT......SBSEEEEES--TTSTTTSBSH.HHHHHHHHHHHTTS-CSSHHHHHHHHHCS-HHHHHHCCGG..SSSSSSTTC-SSS-B CS
  COesterase 197 asvsllllsplsrg......lfkraIlqSGsalspwaiqkk.arkrakklakkvgckassskelveclrsksaeelldaqek..aleasssklvsfaPv 286
                  sv  ++l     +      lf+ aI+ SG+ +    ++    +++ +++ +++gc  s +++++eclr+ ++e+ll+a+++  ++    s  +s  P 
  KKY18554.1 238 ISVLDQMLLYDGDNtyngkaLFRGAIMNSGTVVPADPVDCPkGQDVYDAVVDAAGC--SLATDTLECLRNVDYETLLNATNSvpGILSYHSVALSYLPR 334
                 ***98888855554456677**********9998877776669999**********..777799*****************9996666667788999** PP

                 --SSSSSS-HHHHHHCGC..CSEEEEEEETTTTHHHHCCHSTTTSSSSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHS.TTTSSTCHHHHHHHHH CS
  COesterase 287 vdgdflpekPeellkseg..kvplliGvnkdegllflaylldkeksvkkkeeklsesllkdelyleaekkeelseaikeeyt.deadrddaeksrkall 382
                  dg++l+++P+ l++  +  +vp ++G  +deg+lf+ ++ +  +++ +  + ls+  +++  + + e+  ++  +i +     + + ++  +  k l+
  KKY18554.1 335 PDGTVLTQSPDLLVEAGTyaSVPFIVGDQEDEGTLFALFQSNI-TTTAELVTYLSTIFFHSATTSQIEELIATYPTISDGSPfRTGTLNNWYAEFKVLA 432
                 **********99999966*******************965554.3444444444444444445555544444444554444445556666666778889 PP

                 HHHHHHHTHHHHHHHHHHHH..HTT-SEEEEEEE--STTSSSTTTGSSBTTTTHHHHTTGGGTSGCSS-HHHHHHHHHHHHHHHHHHHHSSTTS...TT CS
  COesterase 383 elltdvlfkapvlrtaklha..srgspvYlYsfdyrnssskkpkwmgvvhgdeleyvfglpllekeeftkedeklsrkmmtywtnFaktgnPnk...ee 476
                 ++l+d +f+++ ++++++ +  +   p + Y  +y+       +  g+ hg++l  vf   l +           s  +  y  +F++t +Pn+   ++
  KKY18554.1 433 AILGDLTFTLSRRAFLNEAStvKPDVPFWSYISSYDY----GTPILGTFHGSDLLQVFYGILSNYA---------SGAFHAYYLSFVNTLDPNNgtsST 518
                 99***************99755666666666555544....2259*************99998665.........99*****************99988 PP

                 SS----B.TTTB CS
  COesterase 477 eekWpkytkeee 488
                    Wp+ +++++
  KKY18554.1 519 YADWPQWSTSKQ 530
                 999999954443 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   9.6e-07    0.0086       2      82 ..     143     237 ..     142     274 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9.6e-07
                    EEE--STTTS--TTTT...HHHHHHHHHHHTSEEEEEE---T.....TTS-TTH......HHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHH CS
  Abhydrolase_3   2 vyfHGGGfvlgsldth...dalcrelakelgavvvsvdYrlA.....PehpfPa......avedalaalrwlaeqawelgadpsrivlaGdSaGG 82 
                    +++ GGGf lgs +++   + + +++++   ++ v+v+Yr       P + + a       + d    l+w+a++ +++g dp+++++ G+SaG 
     KKY18554.1 143 FWIFGGGFELGSNSMYdgtTWVSESISEGKPVIYVAVNYRVGgfgflPGKEILAdgsanlGLLDQRLGLQWVADNIEAFGGDPDKVTIWGESAGS 237
                    67889999999999996644455678888899999999998744444444433322111145667777899999989****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3612.45
//
Query:       KKY18555.1  [L=497]
Description: putative atp-dependent rna helicase mss116 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-45  155.1   0.2    7.1e-44  149.7   0.1    2.4  2  DEAD           DEAD/DEAH box helicase
    6.4e-21   74.8   0.0    4.6e-20   72.0   0.0    2.3  3  Helicase_C     Helicase conserved C-terminal domain
    7.7e-06   26.0   0.0    1.2e-05   25.4   0.0    1.3  1  ResIII         Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.056   12.7   0.0      0.095   11.9   0.0    1.3  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   0.1   1.6e-47   7.1e-44       2     174 ..      34     208 ..      33     210 .. 0.90
   2 ?    3.0   0.0     0.017        76      44     104 ..     263     325 ..     237     333 .. 0.68

  Alignments for each domain:
  == domain 1  score: 149.7 bits;  conditional E-value: 1.6e-47
                 HHHHHHHHHHHTTC.EEEEEESTTSSHHHHHHHHHHHHHHHS.TTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilggg.dvlvaaeTGsGKTlaflipvlqivyet.kgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskldng 97 
                 ++Qa++++ +l+++ d+l++a+TG+GKT afl+p++q+++ t ++k+    l+++PtreLa q++++++k+++   +++v   igg+++  + s + +g
  KKY18555.1  34 PVQAATLHDLLREKvDCLAQAKTGTGKTIAFLLPAIQNMVITpRTKKSISLLVLSPTRELAMQIAKEAEKLLQRmPNYKVRTAIGGTNKIAEASSILQG 132
                 89*********7666************************99999*****************************8555999999******99999999** PP

                 CSEEEEEHHHHHHHHHCTS..SHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddllstgk..lnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvk 174
                 +di+v+tpgrl+d+ls+++  l+l ++++lVlDEadr+ld+gf ++i++il  lp++    +  rq +++SATl+ +++
  KKY18555.1 133 CDILVATPGRLLDHLSDEEmrLRLVNLKTLVLDEADRMLDMGFLPDIRKILGFLPDKRR-IP--RQSMLFSATLEGQIQ 208
                 ***************66662266999999*************************85544.45..67********96666 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.017
                 TSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHHHTT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
        DEAD  44 gktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskldng.vdivvgt 104
                 + +  ka+i +Pt +La    + l+  k    +  +++ i+++++++  +++++    i v+t
  KKY18555.1 263 NPSDFKAIIFAPTAALADFYGQILRAQKGLpPTSILHSRISQTKRTRITQEFREApSAICVAT 325
                 566789***********8776666666553222233355666666666666644345666655 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.76   3.4e+03      19      57 ..      84     127 ..      67     139 .. 0.56
   2 ?   -1.9   0.0      0.95   4.3e+03       6      39 ..     182     217 ..     178     235 .. 0.63
   3 !   72.0   0.0     1e-23   4.6e-20      16     110 ..     266     362 ..     253     363 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.76
                 EEEEESSHH...HHHH..HHHHHHHT.TSTEEEESTTSTHHHHHH CS
  Helicase_C  19 ilifvntid...rlek..vklllekk.gikvavlhgelpqneree 57 
                  l+ ++t++   ++ k   kll++   ++kv +  g +++     
  KKY18555.1  84 LLVLSPTRElamQIAKeaEKLLQR-MpNYKVRTAIGGTNKIAEAS 127
                 467777777544332353455533.34777777777666555444 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.95
                 HHHHH.HHTTTTSEEEEEESSHH.HHHH.HHHHHHHT CS
  Helicase_C   6 llell.kleeeggkilifvntid.rlek.vklllekk 39 
                 +l +l +++++ +++++f+ t + ++++ ++l+l ++
  KKY18555.1 182 ILGFLpDKRRIPRQSMLFSATLEgQIQDvAHLIL-NE 217
                 5555577788889999999998876655334443.33 PP

  == domain 3  score: 72.0 bits;  conditional E-value: 1e-23
                 TSEEEEEESSHHHHHH.HHHHHHHTT.STEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSST CS
  Helicase_C  16 ggkilifvntidrlek.vklllekkg.ikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRa 110
                 + k++if++t   ++   ++l+ +kg   + +lh++++q +r +i ++f++  s + +atdv++rG+d+p+v++V++++lp + +sy++r GRt+Ra
  KKY18555.1 266 DFKAIIFAPTAALADFyGQILRAQKGlPPTSILHSRISQTKRTRITQEFREAPSAICVATDVIARGMDFPNVSHVFQIGLPADKASYVHRLGRTARA 362
                 5699********88776777877775367899****************************************************************8 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.7e-09   1.2e-05      24     168 ..      47     202 ..      20     205 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.7e-09
                 TSEEEEEESTTSTHHHHH.HHHHHHH-S........-EEEEESSHHHHHHHHHHGGGGTGG.....GEEEESSS-B--........-SEEEEEHHHHHH CS
      ResIII  24 dkrglikmaTGtGKTlva.aklierllkkgkee...kflflvprkslleqtleefkkflseayke.igkkvsgdkkka.kekdstnkkilvttiqslda 116
                 +   l ++ TGtGKT+   + +i+++    + +     l+l p+++l  q  +e +k+l+   +  + + + g +k+a  ++  + ++ilv+t  +l  
  KKY18555.1  47 KVDCLAQAKTGTGKTIAFlLPAIQNMVITPRTKksiSLLVLSPTRELAMQIAKEAEKLLQRMPNYkVRTAIGGTNKIAeASSILQGCDILVATPGRLLD 145
                 44678999********9978888888777666678899**************7766655544333388899999999966777899************* PP

                 TH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.....SEEEEEESS CS
      ResIII 117 dseeeeeeseellrdrfdviiiDEaHrlgak...kswreilekfke.....avllglTAT 168
                 ++   + e+ +l+  + + ++ DEa r+ ++     +r+il  +++        + ++AT
  KKY18555.1 146 HL---SDEEMRLRLVNLKTLVLDEADRMLDMgflPDIRKILGFLPDkrripRQSMLFSAT 202
                 **...778888888888899*****99999855557888755554422232334445666 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.1e-05     0.095      85     154 ..     298     365 ..     280     397 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.1e-05
  ERCC3_RAD25_C  85 iyGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvliqisshfgsrrqeaqrlGriLrakkk 154
                    ++ ++s+++r++i q+f++ p+  ++    v    +D+P+ + + qi    + +     rlGr  ra ++
     KKY18555.1 298 LHSRISQTKRTRITQEFREAPSAICVAT-DVIARGMDFPNVSHVFQIGLP-ADKASYVHRLGRTARADAN 365
                    677899***************9988876.566689************865.56777899*****999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3504.50
//
Query:       KKY18556.1  [L=457]
Description: putative c6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-12   47.5   0.1    2.1e-12   46.7   0.1    1.5  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.1   1.2e-16   2.1e-12       2     205 ..      12     187 ..      11     258 .. 0.84

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 1.2e-16
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLl 98 
                   +++  +fhp  pil  ++++ +          ++++ l  +i  +G+++++ +t +                 +  +     +++  +s +++q+ l
    KKY18556.1  12 SLYYLYFHPAHPILVPQKVHASR---------NYPDYLQHVIQYIGSHYLPVPTTTL-----Y----------SGIMAE--LCRTDIKSPCMVQARL 82 
                   68899999999999999999888.........8999999999999999999999886.....1..........444444..677999999******* PP

  Fungal_trans  99 llelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrpp.llddsqinlpLPcddddlwe 194
                   l+++ + ++ d++ +  ++  av+la +lg++++ + + +  +  l++e aes+rR+ww  +++D + a   +      +  + +++LPc+++ + e
    KKY18556.1  83 LYSIALNGCNDIKNAQWILAAAVQLALELGMNERDFAEIH--SGGLPIE-AESLRRTWWELYVVDGYMAALWRKSGfSANSVDPDVLLPCEESLYSE 176
                   *************************************996..688****.***********************999889999999*******99988 PP

  Fungal_trans 195 sddaseetlve 205
                      as++   +
    KKY18556.1 177 GACASQSPSFS 187
                   77666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 2878.10
//
Query:       KKY18557.1  [L=423]
Description: hypothetical protein UCRPC4_g04893 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0025   17.0   0.0     0.0093   15.1   0.0    1.8  2  K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
     0.0034   16.7   0.0     0.0085   15.4   0.0    1.6  1  Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.032   14.2   0.0          1    9.4   0.0    2.2  2  CusF_Ec      Copper binding periplasmic protein CusF


Domain annotation for each model (and alignments):
>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.14   8.6e+02     176     213 ..      15      52 ..       6      65 .. 0.72
   2 !   15.1   0.0   1.5e-06    0.0093     125     227 ..     157     264 ..     125     278 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.14
  K_oxygenase 176 vHsseylerkeellakkriaVvGsGqSaaeifedllrr 213
                  vH+s++ ++ ++ +   +++V G+G  +   +  +l+ 
   KKY18557.1  15 VHQSHMRQSLNRVAMTYTFVVAGAGPAGLAAVGTILEY 52 
                  78888888888888888999999988776666666555 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.5e-06
  K_oxygenase 125 deeeeeelltveskd..aegeeeelearnlvlgvGtep.kiPevleklegkervvHsseylerkee.llakkriaVvGsGqSaaeifedllrr....q 214
                  d+ +   +++v +++  ++g ++++  r lvl +G++p ++P+ + +l  ++  + ++ + ++    l +   +aVvG+  Sa  ++ +l +      
   KKY18557.1 157 DNMSA--RWKVYTSNdlENGGSHQYWGRGLVLCTGSHPsTLPAPVYNLAMTKLPLETALTPSNLVTmLPKDAIVAVVGGSHSAILVLLNLFNLasttH 252
                  44433..344444433589999*************888369**9999995443333333333332235678889************999988743334 PP

  K_oxygenase 215 kkvelklvtrsea 227
                  ++ +++++ r+ +
   KKY18557.1 253 PHLQVRWFRRK-S 264
                  56888887554.3 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.4e-06    0.0085       3     155 ..      33     238 ..      31     259 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-06
                  EEEE--SHHHHHHHHHHHH..H.TS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH........................................ CS
                  xxxxxxxxxxxxxxxxxxx..x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................ RF
  Pyr_redox_2   3 vvviGgGpAGlaaaltlaq..a.gakvtlvelegtclnggcllskallgvaedaeias........................................ 57 
                   vv G+GpAGlaa  t+ +  +   kv+ v+      ++g ++ k +++v+++++                                           
   KKY18557.1  33 FVVAGAGPAGLAAVGTILEylHpYEKVLWVD--P--SFEGGSIGKDWREVPSNTRATFfrqyaealgpfrnviakskqpnaftiiktldeskecslsy 126
                  6999***************775345566663..2..23444444455555544443334555545566667777888888888888888888777766 PP

                  ............HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T. CS
                  ............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  Pyr_redox_2  58 ............evvkklnqgielllgeevvkidpgkkkvklekkkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp. 142
                               + +++  +  +++++   ++   +k ++ +++++g  +++    lvl+tGs+p +l+ p  +          +++ +l+ +l+p 
   KKY18557.1 127 aadlcvmlseglSHSSSVDIKRGKITAADWDNMSARWKVYTSNDLENGGSHQYWGRGLVLCTGSHPSTLPAPVYNL--------AMTKLPLETALTPs 216
                  6666666665443322222222222222333333444444444444466667777**************9995522........33333333333333 PP

                  .........SEEEEES-SHHHH CS
                  .........xxxxxxxxxxxxx RF
  Pyr_redox_2 143 .........krivvvGgGyiGv 155
                           + ++vvGg+  ++
   KKY18557.1 217 nlvtmlpkdAIVAVVGGSHSAI 238
                  3333355547779***998775 PP

>> CusF_Ec  Copper binding periplasmic protein CusF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.029   1.7e+02      22      37 ..      23      38 ..      19      48 .. 0.79
   2 ?    9.4   0.0   0.00017         1      11      41 ..     142     172 ..     139     174 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.029
                CCTB-SEEEEEE--TT CS
     CusF_Ec 22 algwpaMtMdFkvadp 37
                +l++ aMt +F va +
  KKY18557.1 23 SLNRVAMTYTFVVAGA 38
                68889********965 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00017
                 TEEEEEE--BCCCTB-SEEEEEE--TTSEES CS
     CusF_Ec  11 gkvtlsHgpipalgwpaMtMdFkvadpalla 41 
                 ++v +++g i a++w+ M  + kv  + +l+
  KKY18557.1 142 SSVDIKRGKITAADWDNMSARWKVYTSNDLE 172
                 6899****************99998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.51
# Mc/sec: 2509.04
//
Query:       KKY18666.1  [L=394]
Description: putative tap domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-10   39.5   0.0    1.2e-09   38.2   0.0    1.7  1  Abhydrolase_4  TAP-like protein
    4.2e-07   29.9   0.7    0.00016   21.4   0.7    3.5  1  Abhydrolase_1  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   1.4e-13   1.2e-09       8      76 ..     313     382 ..     306     390 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 1.4e-13
  Abhydrolase_4   8 laesllsCagwpvspqrprdesta.kgaapvLllqnerDpaTPyegakklakalggavlvtvegeGHgal 76 
                    +a ++ sCa+wp + ++    + + ++++ +L +++ +Dp+TPy++a+k++  ++g+v +t +g G   +
     KKY18666.1 313 VAANVKSCANWPQRAKEIYSGNFNvQTKHGILYINSPYDPITPYSSAEKASALFPGSVILTHNGYGVSHS 382
                    5566667*******99999988761556************************************996655 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.7   1.8e-08   0.00016      65     109 ..      79     124 ..      21     378 .. 0.57

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.8e-08
                    HHHHHCTTSSEE.EEEETHHHHHHHHHHHHHGGGEEEEEEESECSS CS
  Abhydrolase_1  65 rildalgddklt.lvGhSmGGmialayaaeyperVkalvllgaidp 109
                    +i   l+  k   l G S+G++i+ ++aa++p+r+ +++l+g +dp
     KKY18666.1  79 YIFRTLKPSKCSgLAGVSYGTLIGDTVAAMFPDRMGRVILDGNVDP 124
                    555666777777788****************************333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2688.92
//
Query:       KKY18667.1  [L=1050]
Description: hypothetical protein UCRPC4_g04863 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-07   31.9   0.1    2.6e-07   30.7   0.1    1.7  1  NACHT       NACHT domain
      3e-06   27.7   0.1    1.7e-05   25.3   0.0    2.4  2  AAA_16      AAA ATPase domain
     0.0056   16.9   0.0      0.017   15.4   0.0    1.8  1  AAA_22      AAA domain
  ------ inclusion threshold ------
       0.43    9.8   2.6       0.49    9.6   0.0    2.2  3  KAP_NTPase  KAP family P-loop domain


Domain annotation for each model (and alignments):
>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.1   5.7e-11   2.6e-07       3     165 ..     275     461 ..     273     462 .. 0.71

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 5.7e-11
                 EEEEC-TTTCHHHHHH......HHHHHHCTS-SCCCC.-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEE.......... CS
       NACHT   3 vilqGeaGsGKTtLlq......klalawaegklpqga.fklvFflslrelsrsgnarsladllfsqlpepaapvsevwavllelperlL.......... 84 
                  +++G++GsGK+ L++      + ++a+ ++k+++       Ff ++++ s++    sl  +l s   ++ ++++ +   l++  +r+           
  KKY18667.1 275 YWIRGKPGSGKSCLMKfvfnepRTIEALGKWKPQGSIrLLSHFFWNSGTKSQR----SLHGFLLSLTYQLLRDSQDIAGKLISAHQRISehrnnddwse 369
                 69*************93333334478899999887643344455566665554....666666666666666666655555555555555566666666 PP

                 ...................EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSCE..EEEE--TCCHHHHHHHHCTT CS
       NACHT  85 ...................lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdleeqleeaivlevegfsesrrkqlvrkyfs 164
                                    + +DglDe+ ++ g+       +l++   + +ll ++++ +++rp+   + + + +    l++e++++++ k l+r+ ++
  KKY18667.1 370 sellrvikqlagshsnpvcIFIDGLDEVDQEYGN------LKLIALVQELALLENVKICVSSRPEMEFRSRWYTCP--KLKLEDLTREDMKVLARDLLQ 460
                 666666666667777777799*********9999......8888555555899**************555555555..5****************9887 PP

                 T CS
       NACHT 165 d 165
                 +
  KKY18667.1 461 N 461
                 6 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.2   5.6e+03      42      78 ..     138     174 ..     133     231 .. 0.52
   2 !   25.3   0.0   3.8e-09   1.7e-05      21     164 ..     269     415 ..     264     423 .. 0.60

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.2
      AAA_16  42 rellralekdg.giflrgkcdqlesaipysalaqalar 78 
                 +++l++l++++  +fl+++ +  e ++++++++q   +
  KKY18667.1 138 TKILTHLNAKEeLHFLEQQDRLKELDTTLVMFIQRV-A 174
                 455555555544666666665555555553333333.1 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 3.8e-09
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy..........sa.laqalareellrqlldeaesaeleawrekleealaav 108
                 +g++ +  ++G +G+GKs l++ ++++ +    i + gk++  +s + +          s+  +  +   +l  qll++         ++ + + l ++
  KKY18667.1 269 EGSEKMYWIRGKPGSGKSCLMKFVFNEPR---TIEALGKWKPQGSIRLLshffwnsgtkSQrSLHGFLL-SLTYQLLRD---------SQDIAGKLISA 354
                 67889999*****************7333...3336666666644433311122222221224444423.555555555.........33333333322 PP

      AAA_16 109 pelagaea.......srllellkrllallsrderplvlvlDdlqwadeaslql.laaLlrlles 164
                  +  ++++       s ll+++k+l+    +++ p+ +++D l+ +d++  +l l aL+++l  
  KKY18667.1 355 HQRISEHRnnddwseSELLRVIKQLA---GSHSNPVCIFIDGLDEVDQEYGNLkLIALVQELAL 415
                 22333333444344477777777777...444679*************9999999999998766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.7e-06     0.017       4     110 ..     271     411 ..     268     431 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.7e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee.........................erpevvfvtlpsstsskdllrellralglelka...erls 74 
                 ++++  + G +G+GK+ l++ ++++    ++a                            +  +++ t + + +s+d++ +l +a ++  ++      s
  KKY18667.1 271 SEKMYWIRGKPGSGKSCLMKFVFNEPRT-IEALGkwkpqgsirllshffwnsgtksqrsLHGFLLSLTYQLLRDSQDIAGKLISAHQRISEHrnnDDWS 368
                 56788899****************9744.3333369998777777777777777544333333335555555566666666666666655557666667 PP

      AAA_22  75 seellealeqalraravielliiDEaqhlr...s....eeale 110
                 ++ell+ + q + +++ ++++ iD  + ++         ++++
  KKY18667.1 369 ESELLRVIKQLAGSHSNPVCIFIDGLDEVDqeyGnlklIALVQ 411
                 777777777777777779**********976441444533333 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2      0.77   3.5e+03     130     179 ..     121     170 ..      90     171 .. 0.68
   2 ?   -1.0   0.0      0.18     8e+02      25      43 ..     277     295 ..     275     318 .. 0.88
   3 ?    9.6   0.0   0.00011      0.49     140     212 ..     353     425 ..     297     429 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.77
  KAP_NTPase 130 egasllavlsraaklkeeaplkklqteveelladmektLdalqkrlVvvi 179
                  + ++  +ls+    ++ + l+ l ++ e  + + ++ L++l+++lV++i
  KKY18667.1 121 DMNDMELQLSNYESVLQTKILTHLNAKEELHFLEQQDRLKELDTTLVMFI 170
                 44455555556666666777777777777678888889999999999988 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.18
  KAP_NTPase  25 LygkWGsGKssllnklede 43 
                 + gk GsGKs l +++ +e
  KKY18667.1 277 IRGKPGSGKSCLMKFVFNE 295
                 67888********998876 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00011
  KAP_NTPase 140 raaklkeeaplkklqteveelladmektLdalqkrlVvviDdLDrcetee.vlqlleavkllfslkpvvfilav 212
                  a++  +e  + ++  e e ll  +++     + ++ ++iD+LD +++e+  l+l+ +v+ l+ l++v+  +++
  KKY18667.1 353 SAHQRISEHRNNDDWSESE-LLRVIKQLAGSHSNPVCIFIDGLDEVDQEYgNLKLIALVQELALLENVKICVSS 425
                 5555555555555555555.55555555555888999************8567899999999999998876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1050 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.49
# Mc/sec: 6420.67
//
Query:       KKY18668.1  [L=103]
Description: hypothetical protein UCRPC4_g04864 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 670.18
//
Query:       KKY18673.1  [L=406]
Description: putative arginine metabolism regulation protein iii [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-61  206.8   0.0    4.6e-61  206.1   0.0    1.3  1  IPK       Inositol polyphosphate kinase


Domain annotation for each model (and alignments):
>> IPK  Inositol polyphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.1   0.0   2.6e-65   4.6e-61       2     197 .]     134     399 ..     133     399 .. 0.97

  Alignments for each domain:
  == domain 1  score: 206.1 bits;  conditional E-value: 2.6e-65
                 EEEE-TTTT-SSEEEEEEEESSSSS-TTSTCHHHHHHHHHHCCSTHHHHSEEEEEEEEEE....................TTTTEEEEEEHHHHCT-SH CS
         IPK   2 lvLedltagfkkPcvlDvKlGtrtydedaseekrekqqkkskettseslGfrilGmkvyk....................eeedeyltvdkkygrslsk 80 
                 + Le++++gf++P++lDvKlG+r++++da+++kr+k++++sketts+slGfri+Gmkv+k                     ++d+y++++k+ygr +++
  KKY18673.1 134 IALENVAYGFERPNILDVKLGARLWADDAPPAKRAKLDAVSKETTSSSLGFRIAGMKVWKnadaadkeaptslttydgnvFDKDGYRCYNKNYGRMFND 232
                 78*****************************************************************************99****************** PP

                 HHHHHHHHHCCCSSS..SCCHHHHHHHCHHHHHHHHHHHHHCSHSEEESSEEEEEEEETT....................................... CS
         IPK  81 eevkealkkFlsngk..slrkdakaaskllerLqelkqvlesqeslrfyssSLLfvyegdseaseka................................ 145
                 ++vk++++++++     ++++++++++++l  L+++++vl+ +es r+yssS+L+vyegd++a ++a                                
  KKY18673.1 233 DDVKNGFETYFYGLAgiDRSRSKAIIERMLIDLRDIERVLTAEES-RMYSSSILMVYEGDPKALNAAleiehrrlsqpanpkagimieepaavealsni 330
                 ************87788999999**********************.***************999999******************************** PP

                 ................................SSEEEEEE--TTEEE--TSS--HHHHHHHHHHHHHHH CS
         IPK 146 .................eekeaeeeeeeeskekkvevklIDFAhvvptesggpDegyllGlksLikile 197
                                   ++e+e+e+ee+  +k ++v++IDFAh+++t+++gpDe++l+G+++ i+il+
  KKY18673.1 331 tdsvqpssshvndenniADDEEENEDEEDAGPKVYDVRMIDFAHASWTPGQGPDENVLKGIRNVIRILQ 399
                 **************99888888888888999999********************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 2581.24
//
Query:       KKY18674.1  [L=337]
Description: putative imp-specific 5nucleotidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     4e-150  500.3   0.0   4.5e-150  500.1   0.0    1.0  1  ISN1      IMP-specific 5'-nucleotidase
  ------ inclusion threshold ------
      0.041   14.5   0.0       0.66   10.6   0.0    2.2  2  VWA_2     von Willebrand factor type A domain


Domain annotation for each model (and alignments):
>> ISN1  IMP-specific 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  500.1   0.0    5e-154  4.5e-150      89     411 .]       1     330 [.       1     330 [. 0.98

  Alignments for each domain:
  == domain 1  score: 500.1 bits;  conditional E-value: 5e-154
        ISN1  89 lLvPsigkfftkLpleeaflvedkkraissrrlvaPsfnDvrlilntaqilaltkak..........klklvtfDGDvtlydDGksleednpvikrllk 177
                 +LvPs+g+fft+L+leeaf+++d++raissrr+vaPsfnD+rlilntaq+l+l++ +          ++kl+tfDGDvtlydDG+sl++dnpvi+rl++
  KKY18674.1   1 MLVPSVGTFFTPLRLEEAFIYQDAQRAISSRRFVAPSFNDIRLILNTAQVLSLVRPSaplsspqptsQIKLLTFDGDVTLYDDGASLTPDNPVIQRLIH 99 
                 79*****************************************************99****************************************** PP

        ISN1 178 llkkdvkvgivtaaGyteaekyeerlkGLldalkaseelteeqkenllvmGgesnylfryseeskellklvereeWllpemkaWseedikalldvaeka 276
                 ll+  +k+givtaaGyte +ky++rl+GLlda++++++lt++qk+nl+vmGgesn+lf ++ +s++ll+++ r++W+lp+m++Wse++i++ll vae+a
  KKY18674.1 100 LLSLSLKIGIVTAAGYTEPAKYYSRLHGLLDAINSNSTLTPTQKTNLVVMGGESNFLFVFDPTSPSLLRYIRRRDWILPAMQTWSETSIQSLLTVAEQA 198
                 *************************************************************************************************** PP

        ISN1 277 lrelakklklp.atilrkeravGivpsekevklareqLeevvlvvqkklelseaare..ikfcafnGGsDvfvDiGdkslGvevlqkyfgkeekaeikk 372
                 +++++++l+lp + ilrkeravGi+p+  +++++reqLee+vlvvq+++e+ +a+r   ++fcafnGG+DvfvDiGdks+Gv+ +qk+fg+     i++
  KKY18674.1 199 FQSIVSTLSLPaSPILRKERAVGIYPAP-DQRFTREQLEETVLVVQQVVEQCDAVRLhgLPFCAFNGGNDVFVDIGDKSWGVMGVQKWFGG-----IEP 291
                 ***********667*************9.**********************99987566********************************.....999 PP

        ISN1 373 eetlhvGDqflsaganDfkarlaattvWiasPaetvell 411
                 +etlhvGDqflsaganDfkarla++t+Wia+P+etv ll
  KKY18674.1 292 RETLHVGDQFLSAGANDFKARLAGCTAWIANPRETVGLL 330
                 ************************************886 PP

>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.059   5.3e+02      34      67 ..      63      99 ..      41     114 .. 0.71
   2 ?   10.6   0.0   7.4e-05      0.66      18      91 ..     122     201 ..     109     208 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.059
       VWA_2 34 slpgdrvglvtfsdgpevl...ipltkdkakilnalr 67
                 +p++++ l+tf++++++    ++lt d+  i++ ++
  KKY18674.1 63 PQPTSQIKLLTFDGDVTLYddgASLTPDNPVIQRLIH 99
                34899*********99876222345666666666666 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 7.4e-05
       VWA_2  18 ptrleaakdaveallkslpgdrvglvtfsdgpevlipltkdkakilnalrnleak......gggtnlaaaLqlarkalkk 91 
                 ++rl+ + da+++ +   p+++ +lv+++++++ l+ ++    ++l+++r+ ++         +t++++ L  a++a+++
  KKY18674.1 122 YSRLHGLLDAINSNSTLTPTQKTNLVVMGGESNFLFVFDPTSPSLLRYIRRRDWIlpamqtWSETSIQSLLTVAEQAFQS 201
                 567777888888888888***************99999988899999999988888888878899999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2269.42
//
Query:       KKY18675.1  [L=508]
Description: putative mrna cleavage factor complex ii protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-34  116.4   0.1    8.2e-34  115.7   0.1    1.4  1  CLP1_N      N-terminal beta-sandwich domain of polyadenylatio
    1.3e-29  103.4   0.0    4.5e-29  101.6   0.0    2.0  1  CLP1_P      mRNA cleavage and polyadenylation factor CLP1 P-l
    6.8e-27   94.2   0.0    1.2e-26   93.4   0.0    1.4  1  Clp1        Pre-mRNA cleavage complex II protein Clp1
     0.0019   18.0   0.0     0.0041   16.9   0.0    1.5  1  ATP_bind_1  Conserved hypothetical ATP binding protein
  ------ inclusion threshold ------
      0.097   12.8   0.0       0.23   11.5   0.0    1.8  1  MMR_HSR1    50S ribosome-binding GTPase
       0.19   11.2   0.0       0.45   10.0   0.0    1.6  2  FeoB_N      Ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> CLP1_N  N-terminal beta-sandwich domain of polyadenylation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7   0.1   2.8e-37   8.2e-34       2      92 .]      25     115 ..      24     115 .. 0.96

  Alignments for each domain:
  == domain 1  score: 115.7 bits;  conditional E-value: 2.8e-37
                 E-TTEEEEEEE-SSS-EEEEEEEE--EETTEE--TT-EEEE-TT-EEEEEESS-EEEEEES.-EEEEEEES--SHHHHHHHHHHHHHHHHHH CS
      CLP1_N   2 LekeselrfeveskeklkikllsGtaEifGtELaknkeytfskgtkfaiftwegcklevkg.eaeseyvseetpmksylnlhlaLeklRqka 92 
                 ++++se+rfev+s++ lk++ll GtaE+fGtE++++++ytf+  tk++iftw+gc++ev+g  ++sey++eetpm++y+n+h+aLe lR++a
  KKY18675.1  25 IPEGSEWRFEVASGKYLKVQLLGGTAEVFGTEIVSGQTYTFT-CTKASIFTWHGCTIEVSGdACQSEYIAEETPMTEYANVHFALETLRNEA 115
                 799***************************************.9***************995677************************986 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.0   1.5e-32   4.5e-29       1     188 []     129     348 ..     129     348 .. 0.93

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 1.5e-32
      CLP1_P   1 GpkdsGKSTlarlLlNyalrkgrkpvyvDlDvGqseispPgtislalverpi...........dveegfsldaplvyffGdtspsdnps.lylalvkel 87 
                 Gp d+GK++l+++L  ya+r gr+p++v+lD   +++s+P t+ +a  ++ i           ++++ ++ + pl y +G   p+d+    y a++++l
  KKY18675.1 129 GPDDAGKTSLTKILTGYAVRIGRQPMVVNLDTKEGMLSIPSTMTAAAFKTMIdieegwgsspmSGPSAIPVKLPLAYSYGLPDPNDKDGeIYRAIISRL 227
                 99************************************************9999*****999999999****************9987669******** PP

      CLP1_P  88 areveekleenkkakasgliIntpGwvk..........glgaellleliealepdvvvvldqeellnelkrdlp..........lskvkvvklpkspgv 166
                 a +v+ +le+++++k+ g+iI+t+G ++          +  + ++ ++++ + ++++vvl++e+l+ +l++ +           l++v+vvkl+ks+g 
  KKY18675.1 228 ALAVSGRLESDPESKEAGIIIDTSGSISqarssssapgSTPYATISHIVSEFSISAIVVLGSERLYVDLQKRFDgrptsnstatLETVSVVKLSKSGGC 326
                 ***************************9888888777334699**************************998866555555566789************ PP

      CLP1_P 167 vqrsreerrelreerireYFyg 188
                 v+r++   r  r+ +ir YFyg
  KKY18675.1 327 VDRDEDFMRSFRSSQIRDYFYG 348
                 *********************7 PP

>> Clp1  Pre-mRNA cleavage complex II protein Clp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   0.0   4.1e-30   1.2e-26       1     117 []     358     502 ..     358     502 .. 0.87

  Alignments for each domain:
  == domain 1  score: 93.4 bits;  conditional E-value: 4.1e-30
                 ---EEEEEETTS-EEEEE-.....------------.-........................-----TS-EEEE-.--GGGTTEEEEEESSSS...... CS
        Clp1   1 LsPysitvdfddlsiyrvge....eeaapssalPigee........................ekeseetklekveepsselqnsilavsqasakd..se 69 
                 LsP+++tvdf+ l iy+  +    ++  ++ ++P g +                        +k s+ + ++++++ps++++n+il+v++ s+++  + 
  KKY18675.1 358 LSPHQQTVDFSFLAIYKFNAaspsSTVPDDLFAPGG-SydpdpdteqdasfltsnnlqsfdtKKPSTANLYTQLTNPSAAMSNCILTVLNVSPHSspTD 455
                 8****************6433342333344455666.37**********************98899999*********************766665578 PP

                 TCCTT--EEEEEEEEEEETTTTEEEEEESSSS.-S-SEEEEEEEE--- CS
        Clp1  70 eevldssvlGFvyVtevdeekkkltvLsPvpgrlpskalilgslkwpe 117
                 e+++d+sv+GF+yV++vde+k+++tvLsP++gr+p+ ++++++ +wpe
  KKY18675.1 456 EDIRDASVMGFLYVADVDEAKRRITVLSPMAGRIPDGIIVWST-SWPE 502
                 9*****************************************9.9*98 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.4e-06    0.0041       1      35 [.     127     161 ..     127     185 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.4e-06
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvavvNLDPA 35 
                 vvGp  +GKt++++ l+ ++  +gr++ vvNLD+ 
  KKY18675.1 127 VVGPDDAGKTSLTKILTGYAVRIGRQPMVVNLDTK 161
                 89*******************************85 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.8e-05      0.23       1      32 [.     124     155 ..     124     263 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.8e-05
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTS CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgt 32 
                 +v++vG   +GK++L + ltg +++++++p +
  KKY18675.1 124 RVLVVGPDDAGKTSLTKILTGYAVRIGRQPMV 155
                 699******************99999988843 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.3   6.8e+03      21      39 ..      66      84 ..      63      91 .. 0.75
   2 ?   10.0   0.0   0.00015      0.45       3      43 ..     125     166 ..     123     175 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.3
                HTTSEEEEESTTSSSEEEE CS
      FeoB_N 21 tgakqkvgNwpGvtvekke 39
                t +k ++  w G t+e + 
  KKY18675.1 66 TCTKASIFTWHGCTIEVSG 84
                5667788899****99765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00015
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTS.SSEEEEEEEE CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGv.tvekkegklk 43 
                 v +vG  ++Gkt+l   ltg   ++g  p v   + keg l+
  KKY18675.1 125 VLVVGPDDAGKTSLTKILTGYAVRIGRQPMVvNLDTKEGMLS 166
                 789***********************9997525788888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3596.31
//
Query:       KKY18676.1  [L=403]
Description: putative apses transcription [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0046   16.8   0.7      0.027   14.3   0.0    2.4  2  KilA-N         KilA-N domain
  ------ inclusion threshold ------
        3.4    8.1   8.4        1.1    9.7   0.9    2.2  2  CENP-H         Centromere protein H (CENP-H)


Domain annotation for each model (and alignments):
>> KilA-N  KilA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0     3e-06     0.027       6      40 ..      87     117 ..      83     163 .. 0.73
   2 ?   -2.5   0.2      0.51   4.6e+03      41      71 ..     319     347 ..     316     352 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3e-06
      KilA-N   6 qeiiirrvkdgyinatkllkaaaedtkriddWlrn 40 
                 +++++rr+kdgy++at ++k+a +      ++ + 
  KKY18676.1  87 SYFLMRRSKDGYVSATGMFKIAFP----WAKYSEE 117
                 6889*****************943....3333333 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.51
      KilA-N  41 kstkelleeleedynise.kkksektisenrk 71 
                 +++k+++ee+++ +  ++ +   + +is+ rk
  KKY18676.1 319 EKAKKMVEEAKQLEAANTsE---SGKISKKRK 347
                 56777888888887766433...244444444 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.3     0.024   2.2e+02      17      78 ..     215     279 ..     201     301 .. 0.53
   2 ?    9.7   0.9   0.00012       1.1      22      93 ..     314     393 ..     309     399 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.024
      CENP-H  17 klsqelrelqeeltevekenlrlkrknrelaaellelakekesek..........eklkeelekleaelkks 78 
                 k+++ ++++ +   +++k  ++++++n+  a+e l+ a e+++ +          +        +e+++k +
  KKY18676.1 215 KIASPTKKVASPRKRTTKAMKEANAANAAAASETLQAALETAASEppqsvepegkP-------GAEEKVKIE 279
                 44444444444445555566666667777777776666666655544434433330.......333333333 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00012
      CENP-H  22 lrelqeeltevekenlrlkrknrelaaellelakekesek........eklkeelekleaelkksrqrwrvvknvasaii 93 
                 ++++ e+  ++ +e+++l+++n +   ++ +++k++e  +         + +++ + le++lk+++ r r + +v+  + 
  KKY18676.1 314 TEAMIEKAKKMVEEAKQLEAANTSESGKISKKRKAEEPVDgdldaalpLQPAKKAKVLEEKLKREKVRNRALVGVTATLA 393
                 5667788888899999999999999999966666666666999999987789999***************9999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1414  (0.0788666); expected 358.6 (0.02)
Passed bias filter:                      668  (0.0372581); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 2559.11
//
Query:       KKY18677.1  [L=248]
Description: putative general amino acid permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-39  134.0  11.5    7.3e-39  133.7  11.5    1.0  1  AA_permease      Amino acid permease
      6e-09   35.2  18.5    1.3e-08   34.1  17.5    1.8  2  AA_permease_2    Amino acid permease
  ------ inclusion threshold ------
       0.94    9.5   4.1        2.1    8.4   0.1    2.4  2  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.7  11.5   1.2e-42   7.3e-39     270     474 ..      10     209 ..       2     213 .. 0.93

  Alignments for each domain:
  == domain 1  score: 133.7 bits;  conditional E-value: 1.2e-42
  AA_permease 270 asaaspfvifikesgvsvlaplinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnf 367
                   +a+spfvi++k++++++l++l+nav++t+a+s+ n +l+ asR+++ lak g aP++++k +k+gvPl a++ls++++ la++  + ++a  +vfn+
   KKY18677.1  10 GVAKSPFVIAMKNLDIPFLPDLVNAVVITSAWSCTNCLLFQASRAVFGLAKHGRAPTIFAKATKSGVPLPALILSIAVASLAFMTCNTASA--KVFNW 105
                  33489******************************************************************************55555555..***** PP

  AA_permease 368 llaisaliglivwlliilsylrfRkalkyqgrsiee..lgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliil 463
                  ++++   +++i ++l +++ lrf   l++qgr++++  l+fk++l p+  +++l+ + +ill++++  ++      ++w+ ++f+ ay +++l+l+i+
   KKY18677.1 106 FINLGSTAIMIAYILKLVANLRFHAGLRAQGRDLNSnpLPFKSRLTPYSNYFALLGVGLILLTNGYGVFIN-----GYWSFQDFFTAYFTIVLYLVIY 198
                  ********************************99765599*******************************.....9********************* PP

  AA_permease 464 vgvklhvknkr 474
                  +g+k+++k+k+
   KKY18677.1 199 LGWKIIKKTKF 209
                  ********997 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1  17.5   2.2e-12   1.3e-08     258     405 ..      14     175 ..       1     198 [. 0.75
   2 ?    0.3   2.9     0.041   2.4e+02      83     132 ..     154     204 ..     137     215 .. 0.60

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 2.2e-12
  AA_permease_2 258 svaalffeavggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsv 353
                    s++ + ++++  +++  +v+++++ s++ + n +++ +sr ++ la++g  P+ fak  k g p+ a+il+  v+++ ++ + +as++ +n+  ++
     KKY18677.1  14 SPFVIAMKNLDIPFLPDLVNAVVITSAWSCTNCLLFQASRAVFGLAKHGRAPTIFAKATKSGVPLPALILSIAVASLAFMTCNTASAKVFNWFINL 109
                    35888899999999999******************************************************************************* PP

  AA_permease_2 354 sslgliisyllliigalilrkkrphlkr..............pgkilvaiigalfllfllvalffp 405
                    +s +++i y+l +++ l      + ++r              p+   +a++g+ ++l++   + f+
     KKY18677.1 110 GSTAIMIAYILKLVANLRFHAGLRAQGRdlnsnplpfksrltPYSNYFALLGVGLILLTNGYGVFI 175
                    ***************997777767666666667776544444333334444444444443333333 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.041
  AA_permease_2  83 fnwfayvpvlasilsvaasyllnalgp.....dlqgntwltyliaiaililvali 132
                    +n fa + v    l+++++ +  ++++     d++ + ++t++++ +i++++ +i
     KKY18677.1 154 SNYFALLGVG---LILLTNGYGVFINGywsfqDFF-TAYFTIVLYLVIYLGWKII 204
                    4444444444...5555555555555534333444.3567777777777766554 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   1.4     0.052   3.1e+02      41      85 ..      80     122 ..      66     141 .. 0.47
   2 ?    8.4   0.1   0.00036       2.1      46     101 ..     157     213 ..     155     235 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.052
  Phage_holin_3_6  41 gaagvlallalllllvala..lalaa.lwlaalivaavllvlagvlal 85 
                      ++ + +a+ +l+++++  a      +  w+    ++   + +a +l l
       KKY18677.1  80 ALILSIAVASLAFMTCNTAsaK---VfNWFIN--LGSTAIMIAYILKL 122
                      3333333333333333333111...1233333..33333333333333 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00036
  Phage_holin_3_6  46 lallalllllvalalala.a.lwlaalivaavllvlagvlalvglkklkkakplpert 101
                      +all+++l+l++  +++    +w      +a + ++  +++++g+k +kk k + ++t
       KKY18677.1 157 FALLGVGLILLTNGYGVFiNgYWSFQDFFTAYFTIVLYLVIYLGWKIIKKTK-FVRAT 213
                      7888888888888776643467777777899999999999999999999955.35555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.55
# Mc/sec: 1350.61
//
Query:       KKY18678.1  [L=199]
Description: putative rho-gdp dissociation inhibitor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-65  220.4   0.1    1.9e-65  220.3   0.1    1.0  1  Rho_GDI   RHO protein GDP dissociation inhibitor


Domain annotation for each model (and alignments):
>> Rho_GDI  RHO protein GDP dissociation inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.3   0.1     1e-69   1.9e-65       6     195 .]       6     197 ..       1     197 [. 0.90

  Alignments for each domain:
  == domain 1  score: 220.3 bits;  conditional E-value: 1e-69
     Rho_GDI   6 eeeeeeeeekklklgpqkslkeqleldkdDesLrryKeqL.Lgsakvdleavetnepevki.lkltilsserpdevleldltedleklkkkaftlkegs 102
                 +++   ++++ +k+g++k+++e+ +ld+dDe+L+r+K++L L++  +   ++++++p+ +i ++l++ +++rpd+++el   + le+lkk++f +kegs
  KKY18678.1   6 DDDLAPSKTEGFKVGEKKTIDEYNKLDQDDEALNRWKASLgLAAGDT---ISDPSDPRKCIiHSLALEVEGRPDITIELTQPGALENLKKQPFIIKEGS 101
                 44445556689****************************99988553...6799999977616678888999999999988888*************** PP

     Rho_GDI 103 eyklkisFkvsneivsGlkYvqtvwktgvkvdkskemlGsysPqqee...yeyeleeeeaPsGllarGsYsakskfvDDDkkvyleleysfeikkd 195
                 +y++k++Fkv++e++sGlkYvq+v+++g++vdk++em+Gs++P+++    ++++++ eeaPsG++arG+Y+a s+fvDDD +++l++e++fei+kd
  KKY18678.1 102 RYQMKATFKVQHEVLSGLKYVQVVKRKGIRVDKHEEMIGSFAPNTTGsptWSKKFAAEEAPSGMIARGKYDAVSRFVDDDMHDHLKFEWTFEIAKD 197
                 ********************************************975567********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1291.66
//
Query:       KKY18679.1  [L=322]
Description: putative ser thr protein phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.3e-36  124.2   0.9    1.2e-35  123.8   0.9    1.2  1  Metallophos    Calcineurin-like phosphoesterase
     0.0014   19.1   0.5     0.0038   17.6   0.5    1.8  1  STPPase_N      Serine-threonine protein phosphatase N-termina
  ------ inclusion threshold ------
       0.12   12.5   0.0       0.19   11.9   0.0    1.3  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.8   0.9   2.1e-39   1.2e-35       2     201 ..      51     243 ..      50     246 .. 0.91

  Alignments for each domain:
  == domain 1  score: 123.8 bits;  conditional E-value: 2.1e-39
                  EEEEEESBTBTTCCTHHHHHHHHHHHH.HHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddl.lreekpdlvllaGDlvdrgdlekellel.laalvkypipvylllGNHe........gfeeellnkygylg 89 
                  +++v+gD+H     gq+ d l++++    +++ ++l+l  GD+vdrg ++ e++ l ++ +++yp++v+l++GNHe        gf+ e+ +kyg+  
   KKY18679.1  51 PVTVVGDIH-----GQFFDMLEIFKIGgFCPNTNYLFL--GDYVDRGLFSVETISLlVCLKLRYPHRVHLIRGNHEsrgvtqsyGFYTECARKYGN-- 139
                  799******.....**********7778677799****..*******8888888887**************************************9.. PP

                  HHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESS.........CS CS
  Metallophos  90 ifsepwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsply.........rg 174
                    +++w ++++ f++l l++ +++  +++++hGg sp + +s+d+++ +++++e+p++g   d+ ++d     ++           +         rg
   KKY18679.1 140 --ANVWHYFTDMFDFLTLSVVIND--QIFCVHGGlSPSI-HSIDQIKIIDRFREIPHEGpmaDLVWSD-----PD-----------PerdefslspRG 216
                  ..889*******************..********77777.****************************.....33...........223444444467 PP

                  SSCSCCHHHHHHHHHHTTESEEEEESS CS
  Metallophos 175 sgylfgdealedllkkygvdlvisGHt 201
                  +gy+fg ++++++l  +   +++++H+
   KKY18679.1 217 AGYTFGGDVVKKFLHVNSMSHILRAHQ 243
                  99************************7 PP

>> STPPase_N  Serine-threonine protein phosphatase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.5   6.3e-07    0.0038       1      43 [.      10      44 ..      10      48 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 6.3e-07
   STPPase_N  1 vDdiIerLlevrgkpggkkvqLseaEIrqlCakareiFLsQPt 43
                +D++IerL +       k++ L e+ I+++Caka+e+++++ +
  KKY18679.1 10 LDECIERLYK-------KEL-LAESVIEAICAKAKELLMKESN 44
                7999999998.......444.******************9875 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.2e-05      0.19       4      72 ..      53     135 ..      51     182 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.2e-05
  Metallophos_2   4 aiiSDlHsnldaleavlealkevgvdaiihaGDl.eeeepevleellela........pvlaVrGNnD......eev.veedvlr 72 
                     ++ D+H++++   +++++   +     +++GD+   + + ++e++  l         +v+ +rGN++      + + +  +++r
     KKY18679.1  53 TVVGDIHGQFFDMLEIFKIGGFCPNTNYLFLGDYvD-RGLFSVETISLLVclklryphRVHLIRGNHEsrgvtqS-YgFYTECAR 135
                    6899***************999999999*****843.333344444444444566899**********6555531.223333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2070.27
//
Query:       KKY18680.1  [L=540]
Description: hypothetical protein UCRPC4_g04831 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.35s 00:00:01.03 Elapsed: 00:00:00.54
# Mc/sec: 3021.05
//
Query:       KKY18681.1  [L=649]
Description: putative glutamate carboxypeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-20   72.9   0.0    4.3e-20   72.3   0.0    1.3  1  Peptidase_M28  Peptidase family M28
    4.8e-12   45.7   0.2    1.2e-11   44.5   0.0    1.7  2  PA             PA domain
    4.1e-09   36.6   0.0      7e-09   35.8   0.0    1.3  1  TFR_dimer      Transferrin receptor-like dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0   7.2e-24   4.3e-20       1     183 [.     298     497 ..     298     509 .. 0.81

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 7.2e-24
                    EEEEEESTTCESEEEEEEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHH...GGCCSSEEEEEEEESSCSGSSHHHHHHHHHHC..CCTTE CS
  Peptidase_M28   1 NviatlegkatdevlllgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaa...sgsrpkrgvrflffdaEEagllGSkafakakp..elkki 91 
                    Nvi t+ g++ +e +++g H Ds++        GA+D  sg  ++ e++r l +   +g +p r+++++ +d EE+gl+GS+ +a+++     + +
     KKY18681.1 298 NVISTITGES-EESIVIGNHHDSWSC-------GAIDPVSGSTVMNEVVRGLGKlisKGWKPYRKIIIASWDMEEYGLVGSTEWAEEHAesLFEHC 385
                    9*********.9*************8.......**********************99999*************************94444599*** PP

                    EEEEEECS-SSSS--EEE...................HHHHHHCHHHHHHHHHHHHHTT-TTSCCEEEEESSTT-STTHHHH.TTT--EEEE...C CS
  Peptidase_M28  92 aavlnlDmvgsggkellf...................esgdkssselekelkalakpvgraaaedpfdersgrgrsDhspfl.kagvpvldl...a 164
                    +a+lnlD + sgg+ l                      +++++ss  +++l ++ k+  +   + p  +  +   sD+++f  + g p ldl   a
     KKY18681.1 386 VAYLNLDGATSGGSILSAvgspllapilrsvtqtipsPISPATSSVYSDWLVNTQKTHPNL--HRPHLD-IMGTGSDYTAFYhHLGTPSLDLsfsA 478
                    ***************9998888888888866665544444555555554444444433332..233222.234459**99986788******7777 PP

                    TSSS-TTTTSTTSSGGGB- CS
  Peptidase_M28 165 etgfpevyHtprDtldnid 183
                    + +  ++yH++ D +  +d
     KKY18681.1 479 DPKSVYQYHSNYDSYHWVD 497
                    77778999*****987666 PP

>> PA  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0     2e-15   1.2e-11       3      71 ..     107     181 ..     103     190 .. 0.85
   2 ?   -3.6   0.1       1.9   1.1e+04      58      78 ..     210     230 ..     201     239 .. 0.67

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 2e-15
          PA   3 gplVyscfagygisadfe.....gvdvkGkivLvqr...tfaeKarnAqaaGAagviivndge.lgaatgasgnegep 71 
                 ++lV   +a+ g+ +dfe     +v+v+Gkiv+++     ++ K+r+A++ GA+gvii++d++ +g+ t ++g++ +p
  KKY18681.1 107 AELV---YANFGTLEDFEllasrEVSVEGKIVICKYskvFRGLKVRAAEKFGAIGVIIYTDPQeDGEFTTKNGYAHYP 181
                 7899...***************************7566677******************8888666666666666665 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.9
          PA  58 lgaatgasgnegepdgitiPa 78 
                 ++++ + +g+e+++ g+ iP 
  KKY18681.1 210 GYPSLPGDGTERKDPGHAIPN 230
                 455555666777777788775 PP

>> TFR_dimer  Transferrin receptor-like dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   1.2e-12     7e-09       1      73 [.     554     633 ..     554     639 .. 0.86

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 1.2e-12
   TFR_dimer   1 lsldpLeeaikkfkkaaeefdkwadkwed..v...ggaessllavrkrrkiNdklmrferafldpeg......lpgrpwykHvv 73 
                 l+ldp+++ai++f+++a  +dk a++ e+  +   +   +++ +++   +iN++++++er+fl          lp+rpw+kH+v
  KKY18681.1 554 LTLDPIFNAIQTFENQALSLDKHAAQ-ESysSsllHTTPPTPESIK---SINNRYISIERNFLLSSPssstrgLPDRPWFKHMV 633
                 579*********************99.4445156667778888888...**************8776677777*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4393.34
//
Query:       KKY18682.1  [L=230]
Description: putative tfiid and and saga complex taf10 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-22   79.2   0.2    2.9e-22   78.3   0.2    1.5  1  TFIID_30kDa      Transcription initiation factor TFIID 23-30k
  ------ inclusion threshold ------
        2.8    8.5   8.2        7.3    7.2   8.2    1.8  1  FoP_duplication  C-terminal duplication domain of Friend of P


Domain annotation for each model (and alignments):
>> TFIID_30kDa  Transcription initiation factor TFIID 23-30kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.2   3.3e-26   2.9e-22       1      50 []      76     137 ..      76     137 .. 0.93

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 3.3e-26
  TFIID_30kDa   1 PiIPDavtayyLekaGlet............sDprlarlvsLaaqKFisdiaadAyqyskir 50 
                  PiIPDavta+yL+ +Gl++            + p+larl++La+qKFi+diaad+yqys+ir
   KKY18682.1  76 PIIPDAVTAHYLTLSGLPPpplpgypatpnsTPPQLARLLALATQKFIADIAADSYQYSRIR 137
                  9*****************66677777778889*****************************8 PP

>> FoP_duplication  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   8.2   0.00082       7.3       4      59 ..     168     219 ..     151     227 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00082
  FoP_duplication   4 grrarrggggrggrrgrgrggrggrggrgrgrggrggrkkkkpltkeeLDaeLDaY 59 
                      g ++ + +g+ ggr++  +++r g gg+g   +g++g + ++ lt e+L ++  +Y
       KKY18682.1 168 GAGQVGDKGKAGGREAHLGQARPGYGGGG---QGGAG-QGRTVLTMEDLGMAVGEY 219
                      44444555555555555555555533333...33333.4558*******8887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1539.47
//
Query:       KKY18683.1  [L=1418]
Description: putative myb dna binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-70  235.9   0.1    6.8e-70  235.4   0.1    1.2  1  TRF              Telomere repeat binding factor (TRF)
    0.00078   19.6   0.0     0.0018   18.4   0.0    1.7  1  Myb_DNA-binding  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> TRF  Telomere repeat binding factor (TRF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.4   0.1   7.6e-74   6.8e-70       2     231 ..     837    1066 ..     836    1073 .. 0.98

  Alignments for each domain:
  == domain 1  score: 235.4 bits;  conditional E-value: 7.6e-74
                  HH..HHHHHHHHHHHHHHHHTHHHHHHHHHHH.TSHHHHHHHHHHHHCHCHCCCCHHHHHHHHHHHHHHSHHHHHHHHHHHHTTTHTTEECSSSTS- CS
         TRF    2 lksLplLdnlstqllrllaespyqkilaivsepdsefgeafdtllslfertkklysekkpllspsilkkressiestlrkinlatfllsvlgtleig 98  
                  l+sLp+Ldnlstq+l++la+s+y+++++++s pd+e+g+ +  +++lf++ k++ys+k p+ls+++l+ ++ s+++tlrk+n+atf +s++g+++i 
  KKY18683.1  837 LDSLPILDNLSTQILSTLAKSSYHDMVTLLSRPDTEAGQEYMAVMDLFNHSKRVYSTKAPFLSAKELDLTDTSQIDTLRKANMATFASSLFGAHDIS 933 
                  68*********************************************************************************************** PP

                  HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHSSSSTCCHH.......HHH..HHHHHTTHHHHHHHHHHHHH CS
         TRF   99 flelaenfldifcpenelgkllkpqgvLyleLktqayisalkeaeerskeeiLddlfpddlediLlerrng.klltpsetdfverckkrkekLlnii 194 
                  +l  ++ fl++f+pe+  g+llk qg L+l+Lktqa+i ++  +   + +++L+ lf+ddle  +l+rr+g + l+p e+df++r+ +r+e+Lln +
  KKY18683.1  934 LLNMNKYFLEVFVPEG--GRLLKAQGSLLLDLKTQAFIHSM-IKDRGPSTDLLYNLFSDDLEAQILSRRPGaRGLAPGEQDFIKRAMSRREILLNDV 1027
                  ****************..***********************.99999************************************************** PP

                  HHTC..CHHHHCS-HHHHHHHHHHHHHCCCHHHHHHHHH CS
         TRF  195 nekd..keLlqkyswesflkellsYvsknmsllvwgkkk 231 
                  + ++  ++L +kysw +fl+++lsY+sk ++ +++ +k+
  KKY18683.1 1028 KTQQgiQTLAEKYSWHDFLRDVLSYISKTLENIIMPTKR 1066
                  *******************************99998876 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     2e-07    0.0018       1      45 [.    1220    1275 ..    1220    1276 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2e-07
                       CSSSBHHHHHHHHHHHHHHT.TCHHHHHHHHT.S.........S-HHHHHHHHHHH CS
  Myb_DNA-binding    1 rgkWteeEdelLleavkkhG.nrWkkIaerlg.g.........Rtekqcrsrwrny 45  
                       r +Wt+eE++ L  ++ +     W+ I+ ++g g         R   q +++ rn+
       KKY18683.1 1220 RRPWTTEEENALMAGLDRVRgPHWSQILAMFGpGgtineslkdRNQVQLKDKARNL 1275
                       689***************99788*********945799999888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.49
# Mc/sec: 8698.42
//
Query:       KKY18684.1  [L=1122]
Description: putative ribosome biogenesis protein urb1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-88  296.0   0.1    9.6e-88  294.8   0.0    1.7  2  Npa1            Ribosome 60S biogenesis N-terminal
    4.5e-44  150.5   0.4    4.5e-44  150.5   0.4    2.8  4  NopRA1          Nucleolar pre-ribosomal-associated protein 1
    0.00096   19.3   0.2        4.6    7.5   0.0    4.5  3  Death           Death domain
  ------ inclusion threshold ------
       0.56   10.5   3.4        4.4    7.6   1.6    3.3  2  DNA_ligase_A_N  DNA ligase N terminus


Domain annotation for each model (and alignments):
>> Npa1  Ribosome 60S biogenesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.8   0.0   2.2e-91   9.6e-88       2     338 ..      99     447 ..      98     448 .. 0.94
   2 ?   -3.2   0.0      0.91   4.1e+03      91     115 ..     593     618 ..     565     627 .. 0.63

  Alignments for each domain:
  == domain 1  score: 294.8 bits;  conditional E-value: 2.2e-91
        Npa1   2 seifqlWsyaaqtnneellsavlallalllrllsshldfreeglelikriLqk.hlkllyrnlss..skeslisptLrLlteivsfdggalarevlrsf 97 
                 ++++++W++a +++n++lls+v+++lall+r++ss+l++r+ gl+++k++Lq+ +l+ + r+l++  +ke+lisp++rLlteivsfdgg++a  v+ ++
  KKY18684.1  99 PDLISTWNTAIESQNNSLLSSVPSVLALLIRVISSELELRDLGLDICKDLLQRdQLRFFDRGLTAtkTKEHLISPCIRLLTEIVSFDGGTVAGLVYAKR 197
                 699**************************************************************7778****************************** PP

        Npa1  98 dfslkvlpklltprkrekkekkedkkkkpsiRtlfirFllsflssgnpslkkdlLeqkkilsalfkglkeDppetvqevLetlkekvlkdkkikrstkl 196
                 d++lk + ++l+ rk e ++++e+++kkps+R ++ r+++++l++   ++k+dlL+q ++++a+f+g+k+D ++++ + Le+l+++v kd++++rs+k 
  KKY18684.1 198 DITLKRIDQFLNQRKAE-ADQNEQRSKKPSLRRIAQRYVIAILKYLTGKAKADLLTQGNLFKAFFQGIKSDEADIILDALEVLERNVAKDTTLTRSQKQ 295
                 ***********888884.4566666668*********************************************************************** PP

        Npa1 197 klfnesaleklaslysrdeeedqdeedekeekesvaelvhefLlalctspgaGicfpdkgwypreasdeksae............gsevtvnk..ksfk 281
                 +++  s+l  + +lys ++   +    ++e+++ v++ +h++L  +cts++ Gi+++++gwyp+++++e++              +s   +++  ++ +
  KKY18684.1 296 RFWLYSTLVAIINLYSFEGIDAE----NEETTSKVQQQAHRLLRIICTSHDEGILRRQTGWYPHGMNPESQLIdglgddyidlglESRFATDRyaDKPP 390
                 ********************543....4446799***********************************75449**********966666666789999 PP

        Npa1 282 vyNklLlnllktLkpwederqqeLllkilkacPeLvapyl.ketslslePrlsstWig 338
                 ++N+ +++++++L+p +d  q+eLl++i+k +PeLva+y+ k++++++eP+++++W+g
  KKY18684.1 391 IRNSQIAGFIQNLRP-DDPAQMELLIEIFKVAPELVADYFsKKSAFPVEPKPTTQWLG 447
                 **************7.678*********************77777***********97 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.91
        Npa1  91 revlrsfdfslkvlpklltprkre.k 115
                 ++v ++fd+s + +  l  ++kr+ +
  KKY18684.1 593 TAVAEKFDVSVALVDSLRRMEKRDgQ 618
                 46788999999999999888888432 PP

>> NopRA1  Nucleolar pre-ribosomal-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.46   2.1e+03      22      58 ..      57     103 ..      51     134 .. 0.55
   2 ?   -2.3   0.0      0.61   2.7e+03      10      36 ..     222     264 ..     221     306 .. 0.59
   3 ?   -2.1   0.0      0.53   2.4e+03      77      99 ..     570     592 ..     496     680 .. 0.58
   4 !  150.5   0.4   9.9e-48   4.5e-44       4     201 .]     885    1077 ..     882    1077 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.46
      NopRA1  22 vlskllasleesssfkektqlllllselletllask..........s 58 
                 + +++l+sl +s++ + ++ l++l + l e++ +++          s
  KKY18684.1  57 AFKEFLQSLGNSDQSSKSRKLQVLKTYLEEQSPEKSgltinlpdliS 103
                 55666666766666556666666666666644433344444444440 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.61
      NopRA1  10 sedeeirrlAlavlskllasleesss................f 36 
                 s+++++rr+A   + ++l+ l  + +                +
  KKY18684.1 222 SKKPSLRRIAQRYVIAILKYLTGKAKadlltqgnlfkaffqgI 264
                 6788999999998888888887666555644444444433331 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.53
      NopRA1  77 ralriltnPehplYekvnrflls 99 
                 ++ + l +P  +l    +++l  
  KKY18684.1 570 KMNHELHEPVTELLASYYKYLPD 592
                 33333444444444444444433 PP

  == domain 4  score: 150.5 bits;  conditional E-value: 9.9e-48
      NopRA1    4 lvlsLssedeeirrlAlavlskllasleesssfkektqlllllselletllaskseeeekeprlpslialflaralriltnPehplYekvnrfllsr 100 
                  lv +L s+++eirr+A+ +++++++++++s+     + +++ l+e  e+++  + +++     lps+ia +++r++++l +P ++++ kvn+fl ++
  KKY18684.1  885 LVKCLLSDEDEIRRQAYLNIQRFMHKVQSSE-LAGWQAIYVALGETVESVKIIGLDNP-----LPSIIAELASRCIDVLNQPLNQMFAKVNKFLNKS 975 
                  57789999*******************9999.****************9997777888.....********************************** PP

      NopRA1  101 peldlndvPlf..ysllyssseedeeykkersWiLrlladGlrtksDlkllkrrrvfelllslynsplldaklrelilelllratrieggattLitr 195 
                  p +   ++  +  ++ll++++e+d+ y +e  W+L+ll+ +l+t +Dl+l+++ ++fe++l+  +sp l ++l+ +++el+++a+++ + + tLitr
  KKY18684.1  976 PIWSPSKLCSYwvDQLLMQEPEHDDGYFEEALWLLQLLTASLKTHHDLELYRKAKIFERILAWSESPGLHERLQLKVYELVYKAAQV-DHSNTLITR 1071
                  **********999**************************************************************************.799****** PP

      NopRA1  196 sGllsW 201 
                  +G+l W
  KKY18684.1 1072 MGILGW 1077
                  *****9 PP

>> Death  Death domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.02        91      36      79 ..     165     205 ..     152     211 .. 0.81
   2 !    7.5   0.0     0.001       4.6      34      77 ..     567     616 ..     563     627 .. 0.87
   3 ?    2.5   0.1     0.037   1.7e+02      38      72 ..     855     887 ..     827     899 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.02
                 HHSSSTHHHHHHHHHHHHHHHHTTTCSHHHHHHHHHHTTHHHHH CS
       Death  36 ekennslrsqsyalLqlWedregenatvgtLleaLrklgrddaa 79 
                 +++ ++l s++  lL++ ++   + +tv+ L++a r++ + ++ 
  KKY18684.1 165 KTK-EHLISPCIRLLTEIVSF--DGGTVAGLVYAKRDITLKRID 205
                 333.4799************6..************999988765 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.001
                 HHHHSSSTHHHHHHHHHHHHHHHHTTTCSHH......HHHHHHHHTTHHH CS
       Death  34 riekennslrsqsyalLqlWedregenatvg......tLleaLrklgrdd 77 
                 r++k n+ l++++++lL  ++++ ++ a  +       L++ Lr+++ +d
  KKY18684.1 567 RTAKMNHELHEPVTELLASYYKYLPDTAVAEkfdvsvALVDSLRRMEKRD 616
                 6788899****************976654448888899********9998 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.037
                 SSSTHHHHHHHHHHHHHHHHTTTCSHHHHHHHHHH CS
       Death  38 ennslrsqsyalLqlWedregenatvgtLleaLrk 72 
                 e+   + +s + Lq+We++e e a ++  +  L k
  KKY18684.1 855 EE--EHTASLSTLQKWEKQEVEAAITSGTVAGLVK 887
                 44..55788999*******9865544433333333 PP

>> DNA_ligase_A_N  DNA ligase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   1.6   0.00098       4.4       4     151 ..      57     242 ..      55     250 .. 0.54
   2 ?   -0.7   0.0      0.34   1.5e+03     103     143 ..     638     681 ..     549     698 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00098
                     HHHHHHHHHCC..---HHHHHHHHHHHHHTS-................................SHHHHHHHHHHSS-CCCS-..-----HHHHH CS
  DNA_ligase_A_N   4 elaelfekiee.stkkrlekrailanffrkves..............................agpedlypalrLllPdydgr..eygigeslla 65 
                     ++ e+++++ +  ++++ +k ++l++++++ +s                              + p+ l+ ++r +  +++ r   ++i + ll+
      KKY18684.1  57 AFKEFLQSLGNsDQSSKSRKLQVLKTYLEE-QSpeksgltinlpdlistwntaiesqnnsllsSVPSVLALLIRVISSELELRdlGLDICKDLLQ 150
                     5788888888855689999*********44.3333444444444444444444444444444433333444444444444422022222233333 PP

                     HHHHHHHT--HHHHHHH..............HHHHS-HHHHHHHHHCCHHHH------BHHHHHHHHHHH.HH-STTHHHHHHHHHHHHHHHS-H CS
  DNA_ligase_A_N  66 kalaealglskkkikda..............lakvgDlgevaeevlskrstlakkspltieevnelLdkl.aaagkgsedekkkilkkllkrasp 145
                     +   + + +  + +k++                   D g+va  v +kr       ++t++ ++++L +  a+a ++++  kk  l+++ +r   
      KKY18684.1 151 RDQLRFFDRGLTATKTKehlispcirllteiV--SFDGGTVAGLVYAKR-------DITLKRIDQFLNQRkAEADQNEQRSKKPSLRRIAQRYVI 236
                     33333443332222222445555555543321..245555555555443.......478899999999983444777888889999988888655 PP

                     HHHHHH CS
  DNA_ligase_A_N 146 eEakyl 151
                       +kyl
      KKY18684.1 237 AILKYL 242
                     555555 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.34
                     H.....------BHHHHHHHHHHHHH-STTHHHHHHHHHHHHHHHS CS
  DNA_ligase_A_N 103 l.....akkspltieevnelLdklaaagkgsedekkkilkkllkra 143
                     +     +k+++l  +   +lL+ +a  g+++e e ++ ++++l  +
      KKY18684.1 638 TdtkwwNKPENLDFSPFTSLLKVIA--GTSQELETSRRIQRILTDL 681
                     1223556777777777777777776..6556666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.56
# Mc/sec: 6035.14
//
Query:       KKY18685.1  [L=574]
Description: putative amino acid permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.4e-113  378.8  44.6   4.1e-113  378.5  44.6    1.0  1  AA_permease    Amino acid permease
    9.9e-35  120.2  49.7    1.8e-34  119.3  49.5    1.4  2  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.5  44.6  4.6e-117  4.1e-113       2     474 ..      53     513 ..      52     517 .. 0.97

  Alignments for each domain:
  == domain 1  score: 378.5 bits;  conditional E-value: 4.6e-117
  AA_permease   2 vlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasi 99 
                  v++i   + iGtglf+g+g + ++aGp+g+llay ++g+v+++vm+s++e+at++p +g+f ++a+rf++p++Gf+ +++y +++ +++a e+ a++ 
   KKY18685.1  53 VTMIGFCSGIGTGLFIGSGAAYAKAGPAGLLLAYGIVGIVLWCVMQSISELATLFPTAGSFPHWATRFIDPAVGFSLAISYGYCYTIAIASEVSASAV 150
                  8999999******************************************************************************************* PP

  AA_permease 100 liqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeeeg 196
                  ++ +w   td+    v+++v lv++l+inl++v++yge+e+++  +k++++++++iv+i++ +gg+pn++a gfr+++++g + +   +      ++g
   KKY18685.1 151 IVAYW---TDIT-PAVVITVGLVLILAINLMNVRYYGEVEVVTGAVKVLCFLGLVIVSIVITSGGAPNHDAiGFRYWHNPGPWTNYDGI----TGSTG 240
                  *****...9999.9*******************************************************************95443333....44799 PP

  AA_permease 197 afknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.aspfvifikesgvsvlaplin 293
                   f++f+++fv ++f++ Gie v+i+a+E+ dP  +iP+a ++v +ri +fY+l+++ligl+v+  + +l+++s +a +spfvi+ik +g+++l++++n
   KKY18685.1 241 HFLGFLAAFVNASFSYIGIETVVIAAAEAIDPHHAIPRAARRVTYRISFFYILGSFLIGLIVSSGNADLVSGSGNAnSSPFVIAIKQAGIKALPSIVN 338
                  ***********************************************************************999999********************* PP

  AA_permease 294 aviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfR 391
                  a+il++a+s++ns+  ++sR++ ++  d+ +P+++++ + +gvP++a++  ++++ la+l  ++  a +++f++ll++s+++gli w   +++y+rf 
   KKY18685.1 339 ACILVSAWSAGNSYCWVGSRMIVAMTTDRQLPRIFGRTTSKGVPWVAVITAWLFGPLAYLSLGSGGA-AQAFTWLLSLSTVAGLIAWATLSFCYIRFH 435
                  ***********************************************************99999988.9***************************** PP

  AA_permease 392 kalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkr 474
                   alk+qg+s + l+ k +++p++++++++  +ii+li+++  +l+     ++w+ ++f+a+y+++++f++ ++++kl +++k+
   KKY18685.1 436 AALKAQGISRDTLPWKGPFQPYTAWVGFIGSTIITLINGFSVFLK-----GNWSGSDFVASYVGIPIFIVPIIVWKLVKRTKF 513
                  *********************************************.....***************************999986 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3  49.5     2e-38   1.8e-34       5     403 ..      52     475 ..      50     504 .. 0.78
   2 ?    1.2   2.2     0.014   1.3e+02      78     132 ..     453     504 ..     448     519 .. 0.64

  Alignments for each domain:
  == domain 1  score: 119.3 bits;  conditional E-value: 2e-38
  AA_permease_2   5 safalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsv 98 
                    +++++ + s ig+g f+ +  ++a++gpa +l   ++v+i++++v+  + El++++p+ g   +++ +++ + v+f  a+++ ++y +++as +s+
     KKY18685.1  52 QVTMIGFCSGIGTGLFIGSgaAYAKAGPAGLLLAYGIVGIVLWCVMQSISELATLFPTAGSFPHWATRFIDPAVGFSLAISYGYCYTIAIASEVSA 147
                    6888999999*******99888888****99999999999999*********************************************99777777 PP

  AA_permease_2  99 aasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.......stetdt...ffp 184
                     a   ++++  d+++     ++i ++ l+l+ +in+++++ ++ + +++g +k+l +l ++i + +++ +gg  +         +    +   +++
     KKY18685.1 148 SAVIVAYWT--DITPA----VVITVG-LVLILAINLMNVRYYGEVEVVTGAVKVLCFLGLVI-VSIVITSGGAPNHDaigfrywH----NpgpWTN 231
                    777777755..55443....343333.6677789********************86666666.5555555544443368955542....4443333 PP

  AA_permease_2 185 n.gwpgv.......llgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsv....aalffea 266
                      g +g+       l+++  + +s++G+e+++  + e  +++  +p+a+  +   ++++y+l ++++  +v+ ++ + +s++g++    + +  ++
     KKY18685.1 232 YdGITGStghflgfLAAFVNASFSYIGIETVVIAAAEaiDPHHAIPRAARRVTYRISFFYILGSFLIGLIVSSGNADLVSGSGNAnsspFVIAIKQ 327
                    355554333423335566669****************988889*****************************9999777776654444599999** PP

  AA_permease_2 267 vggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas..saaynfllsvsslglii 360
                    +g k++ +iv+++i +s++ a+n+++   sr++ a+ +d+ lPr f ++  +g p++a+i+ +++  + + l+l++   + a+++lls+s+++ +i
     KKY18685.1 328 AGIKALPSIVNACILVSAWSAGNSYCWVGSRMIVAMTTDRQLPRIFGRTTSKGVPWVAVITAWLFGPLAY-LSLGSGgaAQAFTWLLSLSTVAGLI 422
                    ******************************************************************7765.666555789**************** PP

  AA_permease_2 361 syllliigalilrkkrphl..kr...pgk....ilvaiig.alfllfllvalf 403
                     ++ l+++++      + +   r   p+k    + +a++g + +++++l+++f
     KKY18685.1 423 AWATLSFCYIRFHAALKAQgiSRdtlPWKgpfqPYTAWVGfIGSTIITLINGF 475
                    *****999885555555443433566333344433444441334444444444 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.014
  AA_permease_2  78 flsawfnwfayvpvlasilsvaasyllnalgpdlqgntwltyliaiaililvali 132
                    ++  +++w++++ ++ ++l++++s +l    +++ g+++ +  ++i i+i+ +++
     KKY18685.1 453 PFQPYTAWVGFIGSTIITLINGFSVFLK---GNWSGSDFVASYVGIPIFIVPIIV 504
                    5666677777777777777777777654...566666666666666666665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 3485.10
//
Query:       KKY18686.1  [L=1608]
Description: putative rho guanyl nucleotide exchange [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-24   86.0   0.1    2.3e-23   83.4   0.0    2.2  2  RhoGEF          RhoGEF domain
    1.4e-08   34.6   0.0    2.9e-08   33.6   0.0    1.4  1  DUF3507         Domain of unknown function (DUF3507)
  ------ inclusion threshold ------
       0.13   12.7   8.1        2.4    8.6   0.2    4.1  4  FlaC_arch       Flagella accessory protein C (FlaC)
       0.77    9.9   7.8        3.7    7.7   0.3    3.4  3  bZIP_1          bZIP transcription factor
        1.3    9.3   4.2       0.53   10.5   0.4    2.4  2  HALZ            Homeobox associated leucine zipper
        3.8    8.3   5.3         16    6.3   0.1    3.6  3  Occludin_ELL    Occludin homology domain
        4.6    7.1  23.1       0.21   11.4  14.0    3.2  4  Apolipoprotein  Apolipoprotein A1/A4/E domain


Domain annotation for each model (and alignments):
>> RhoGEF  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.0   9.1e-27   2.3e-23       2     178 ..     313     513 ..     312     515 .. 0.82
   2 ?   -0.9   0.1      0.63   1.6e+03      68     106 ..    1527    1566 ..    1481    1598 .. 0.54

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 9.1e-27
                 HHHHHHHHHHHHHHHHHHHHHTHCCCHHCT........CCHHHHHHHHC.TTHHHHHHHHHHHHHHHHHHHH.....................HHHTTS CS
      RhoGEF   2 ikElleTErsYvrdLkvlvevylkplsele........vlseeeikiiF.snieeilelhrsflleeLeerl.................k...eseeqk 71 
                 + E+++TE+ Yv +   lv+ +++  ++++          +ee +  +F  ++++ile+++ fl  ++++ l                 +   ++++  
  KKY18686.1 313 MCEIVDTEERYVAKTYDLVHSVIQECRQKAknkattstSPDEEALARLFpPCLDSILEVNMGFL-GAIRSSLeateaeafddiakgpesStvvKKHDPL 410
                 67*****************9999555554456668876777788889**99*********5555.5444444555588898888777651566677888 PP

                 S-S-SHHHHHHHHSTHHH.HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGTT--HHHHTTHHHHHHHHHHHHHHHHHHTS-TTSHHHHHHHH CS
      RhoGEF  72 eaqsigdvflkfadkfkk.YseYcsnypnalkllkelskknkkfkafleeaeerpecskldLeslLikPvqRlprYpLLLkellkntpeshpdyealkk 169
                  a+ +g+ +l++++kf++ Y+eY++ +pn  ++l++ ++ ++  ++f ++++e   +++++L+slL++PvqRlprY LL++++ + +p+shp  + l k
  KKY18686.1 411 GAVAFGKTMLEWFPKFSEpYKEYMRLQPNFSSTLSSFMRDQN--STFTKRVQE---TGEQKLRSLLMEPVQRLPRYSLLIDAMTNTMPASHPALKPLLK 504
                 899************9977*****************663333..346777654...489**************************************** PP

                 HHHHHHHHH CS
      RhoGEF 170 aleaikeva 178
                 a + + +++
  KKY18686.1 505 ARDVVTDIC 513
                 *99998886 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.63
                  HTTSS-S-SHHHHHHHHSTHHH.HHHHHHCHHHHHHHHHH CS
      RhoGEF   68 eeqkeaqsigdvflkfadkfkk.YseYcsnypnalkllke 106 
                   ++ +a+++ ++f++ +++ +  Y  + ++  +a k ++ 
  KKY18686.1 1527 VSERRAKKLEELFKEATAENEAlYDRFNKELAKAVKNVRA 1566
                  2333444555555555555333355555555555555555 PP

>> DUF3507  Domain of unknown function (DUF3507)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.1e-11   2.9e-08      57     149 ..     108     207 ..      77     227 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.1e-11
     DUF3507  57 eksseklsalvldklGvsllesvdlsskSrfypaveNLspkyqksnvrkslAvalLkkYallses.......klskikselsklleyDethaGdlAsrc 148
                 + +s+++++ ++   G  ++  + +s +S  y+av+ L  + q ++v + +AvalLk +a ls +       + +kik++     ++De ha ++A+r+
  KKY18686.1 108 SVNSSRIQVAIFSCAGWQHYPRITVSPTSPLYAAVNHLPREKQGDEVCRGIAVALLKYFAELSDDvrkalvkRAQKIKGSARLPKMFDEMHAAEIANRM 206
                 567899***************************************************88888753222111134667777777789************9 PP

     DUF3507 149 k 149
                 +
  KKY18686.1 207 E 207
                 7 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.7   9.4e+03      11      32 ..     439     461 ..     438     471 .. 0.73
   2 ?    5.2   0.2     0.011        28       9      38 ..     892     922 ..     890     927 .. 0.85
   3 ?    0.3   0.1      0.37   9.5e+02       1      24 [.    1495    1522 ..    1495    1525 .. 0.66
   4 ?    8.6   0.2   0.00093       2.4       2      34 ..    1572    1604 ..    1572    1607 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.7
   FlaC_arch  11 klstelet.vkkeneelsksvee 32 
                 ++s++l++ ++++n+   k v+e
  KKY18686.1 439 NFSSTLSSfMRDQNSTFTKRVQE 461
                 56666665379999999999987 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.011
   FlaC_arch   9 lsklsteletvkkeneelsksveelkenV.k 38 
                 +++ +++++ v +++e+ s+s+++l+++   
  KKY18686.1 892 IERSDSKVKLVGNNQEDSSDSLQMLEQTLtA 922
                 7889999********************9844 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.37
   FlaC_arch    1 ridelEnklsklst....eletvkkene 24  
                  r+  lE kl++  +    ++++++k++e
  KKY18686.1 1495 RMTALEAKLQSSTSdisnRVNSAQKDLE 1522
                  6777888887766644447777777765 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.00093
   FlaC_arch    2 idelEnklsklsteletvkkeneelsksveelk 34  
                  i+el ++ls++ste++ +kken  l+ ++  lk
  KKY18686.1 1572 IEELKSRLSDTSTEFQKMKKENWRLKREIAGLK 1604
                  79**************************99887 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.7   4.2e+03      34      57 ..    1488    1511 ..    1487    1514 .. 0.76
   2 ?    4.9   0.8     0.011        29      27      58 ..    1531    1563 ..    1528    1567 .. 0.82
   3 ?    7.7   0.3    0.0014       3.7      27      62 ..    1571    1606 ..    1568    1608 .] 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.7
                  HHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   34 rvkaLekeNksLkseleelkkeve 57  
                  ++ +L++ +++L  +l++ + +++
  KKY18686.1 1488 KATTLQARMTALEAKLQSSTSDIS 1511
                  567888888888888888877665 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.011
                  HHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHH CS
      bZIP_1   27 eieeLerrvkaLekeNksLkse.leelkkevek 58  
                  + ++Le+ +k+ ++eN++L ++ ++el+k v++
  KKY18686.1 1531 RAKKLEELFKEATAENEALYDRfNKELAKAVKN 1563
                  789****************99834678888776 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0014
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   27 eieeLerrvkaLekeNksLkseleelkkevekLksk 62  
                   ieeL++r +  ++e +++k+e+ +lk e++ Lk +
  KKY18686.1 1571 GIEELKSRLSDTSTEFQKMKKENWRLKREIAGLKAQ 1606
                  5899999999999*****************999987 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2       4.8   1.2e+04      15      27 ..    1079    1091 ..    1079    1092 .. 0.69
   2 ?   10.5   0.4   0.00021      0.53      18      41 ..    1583    1606 ..    1573    1608 .] 0.83

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.8
        HALZ   15 daLksdydsLkke 27  
                  d L  dyd L+++
  KKY18686.1 1079 DRLVDDYDKLFED 1091
                  5677788888765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00021
        HALZ   18 ksdydsLkkenekLkaelqeLkek 41  
                   ++++ +kken +Lk e++ Lk++
  KKY18686.1 1583 STEFQKMKKENWRLKREIAGLKAQ 1606
                  67899*****************97 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0061        16      13      45 ..     422     454 ..     416     481 .. 0.75
   2 ?   -1.2   0.1       1.3   3.3e+03      37      61 ..    1495    1520 ..    1488    1554 .. 0.43
   3 ?    0.6   1.9      0.37   9.4e+02      58      93 ..    1571    1604 ..    1502    1608 .] 0.57

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0061
  Occludin_ELL  13 YkaeFnkeYkeYkelhaeleevskkfseLerel 45 
                   ++ +F++ YkeY++l+ +++++ + f + ++ +
    KKY18686.1 422 WFPKFSEPYKEYMRLQPNFSSTLSSFMRDQNST 454
                   5678*****************999997655544 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.3
  Occludin_ELL   37 kfseLerelkelkegsk.eykkieee 61  
                    +++ Le++l++++ + + ++++++++
    KKY18686.1 1495 RMTALEAKLQSSTSDISnRVNSAQKD 1520
                    44444444444333333222222222 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.37
  Occludin_ELL   58 ieeeilqeykklkkdpeyqekkkrceyLkekLshiK 93  
                     +ee+ +++++   ++e+q++kk+   Lk++ + +K
    KKY18686.1 1571 GIEELKSRLSDT--STEFQKMKKENWRLKREIAGLK 1604
                    223333334433..5555555555555555555555 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2      0.58   1.5e+03     117     142 ..     164     189 ..     159     230 .. 0.61
   2 ?   -2.7   0.0       1.7   4.4e+03      89     113 ..     912     936 ..     906     941 .. 0.63
   3 ?   -0.7   0.8      0.43   1.1e+03     131     181 ..    1422    1473 ..    1372    1484 .. 0.52
   4 ?   11.4  14.0   8.3e-05      0.21      62     165 ..    1490    1592 ..    1417    1606 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.58
                     HHHCHHHHHHHHHHHHHHHHHHH--- CS
  Apolipoprotein 117 arlapyveelrqklaerleelkesla 142
                     + +a++++++r+ l +r++ +k s++
      KKY18686.1 164 KYFAELSDDVRKALVKRAQKIKGSAR 189
                     56888888888888888888887655 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.7
                     CHHCCHHCHCCHCHHHHHHHHHHHH CS
  Apolipoprotein  89 daeelqeqlavyaeelrerlerhve 113
                      ++ l+++l++y   lr+r+   v+
      KKY18686.1 912 SLQMLEQTLTAYVLSLRSRAGNIVG 936
                     4556666777777777766666555 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.43
                      HHHHHHHHH-----...-----SSSHHHHHHHTS-TTSHHHHHS--XXXXXX CS
  Apolipoprotein  131 aerleelkeslaphae.eveerlssrveelrekleeqaeelrerleanleel 181 
                      +++ e+ + + +++++ +++++l++r+++ ++  + + +++r+++ ++ eel
      KKY18686.1 1422 KRSSEQSSPQKTQKLRvQSPQKLRERLNNEKQFIALTESNIRAEMTKIGEEL 1473
                      3333333333333333233344444444444444444444444444444443 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 8.3e-05
                      HCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSS CS
  Apolipoprotein   62 eqlgqnleelrqrlapyteelrerlaadaeelqeqlavyaeelrerlerhvealkarlapyveelrqklaerleelkeslaphaeeveerlss 154 
                      ++l++++ +l ++l++ t+++ +r++ + ++l+++l v +e   ++le+  ++  a  +++ +++ ++la+ +++++   ++  ee+++rls+
      KKY18686.1 1490 TTLQARMTALEAKLQSSTSDISNRVNSAQKDLERALIV-SERRAKKLEELFKEATAENEALYDRFNKELAKAVKNVRAGPTEGIEELKSRLSD 1581
                      6799999****************************998.999999************************************************ PP

                      HHHHHHHTS-T CS
  Apolipoprotein  155 rveelreklee 165 
                      + +e+++  +e
      KKY18686.1 1582 TSTEFQKMKKE 1592
                      *9999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1270  (0.070835); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.13u 0.33s 00:00:01.46 Elapsed: 00:00:00.53
# Mc/sec: 9107.53
//
Query:       KKY18687.1  [L=1641]
Description: putative sec7 domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-63  212.3   0.0    6.9e-63  211.6   0.0    1.3  1  Sec7      Sec7 domain
    1.5e-18   67.2   0.0    1.1e-17   64.5   0.0    2.5  3  Sec7_N    Guanine nucleotide exchange factor in Golgi transpo
     0.0051   16.5   1.8     0.0051   16.5   1.8    3.2  3  DCB       Dimerisation and cyclophilin-binding domain of Mon2


Domain annotation for each model (and alignments):
>> Sec7  Sec7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.6   0.0   1.2e-66   6.9e-63       1     183 []     659     844 ..     659     844 .. 0.98

  Alignments for each domain:
  == domain 1  score: 211.6 bits;  conditional E-value: 1.2e-66
                 HHHHHHHHHHHHHH-HHHHHHHHHHCCCC..TSSHHHHHHHHHHTCCS-HHHHHHHHCSGGHHHHHHHHHHHCTS--TT--HHHHHHHHCCCS-B-SSH CS
        Sec7   1 rkklleeaaekFnkkpkkgikyliekgll..eedpksiakflketpgldkkklGeylgkekefnkevlkefvdlfdfsglrldeAlRlflssfrlpgEa 97 
                 rk+++ ++a++Fn++pk gi+yl+++g++  ++dp s+a+flk t++++kk+lGey++k++  n+ +l +f+++f+f g+r deAlR +l sfrlpgE+
  KKY18687.1 659 RKRIIIRGAARFNEDPKGGIAYLASQGVIedPRDPVSVARFLKATTRISKKMLGEYISKKS--NEPILVAFISSFNFDGKRPDEALRDLLGSFRLPGES 755
                 6999*************************88889***************************..************************************ PP

                 HHHHHHHHHHHHHHH.HTTCTCG-SHHHHHHHHHHHHHHHHHHC-TTS..CCS--HHHHHHCTTTTBTTB---HHHHHHHHHHHHHS-- CS
        Sec7  98 qkierilekFaekyf.eqnpevfenadavfvLaysiimLntdlhnpqv..kkkmtledFiknnrgindgkdlpeefLeeiYdsIkeeei 183
                   ieri+ +Faeky+ ++ p  ++++da+fvL+y+iimLntdl+np+v  +++mt +dF +n+rg+n g+d+  efLe+iY+sIk++ei
  KKY18687.1 756 ALIERIVTVFAEKYCgSSVPGDVADKDAMFVLTYAIIMLNTDLYNPNVksQNRMTYNDFSRNLRGVNAGQDFAPEFLEAIYNSIKQNEI 844
                 ***************5588999**************************999************************************98 PP

>> Sec7_N  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.0   1.8e-21   1.1e-17       7     157 ..     397     593 ..     393     594 .. 0.92
   2 ?   -3.9   0.0       1.9   1.1e+04      54      97 ..    1191    1233 ..    1183    1240 .. 0.65
   3 ?   -3.7   0.0       1.6   9.6e+03      58      97 ..    1451    1501 ..    1445    1508 .. 0.64

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 1.8e-21
      Sec7_N   7 lvfrdLcklinsakskpkflslaersktfsLeLlesvlsnhgdvfrkhpellqllkqklcplLlknlsespsfpvferslrivllLlkkfrseLktEie 105
                 ++fr L+++++ ++ +    +++   ++++L ++  +l+ +g+ + +hp+l +l k++lc+ L++++  s+++ ++  slr+  +Ll   r  Lk + e
  KKY18687.1 397 ELFRVLINILDPHD-R----QYTDPLRVMALRIIDVALEVAGPSIASHPSLANLAKDDLCRYLFQLV-RSENMILLNGSLRVAGTLLATCRGVLKLQQE 489
                 79999999988555.4....46999******************************************.******************************* PP

      Sec7_N 106 vflsllilill...................................................es.dsslwqrvlaLeilrrlcsdpqllvelylnYDcd 152
                  fls l+  l                                                    e  +   + r+ ++e++  l++ p+++ el+ nYDcd
  KKY18687.1 490 LFLSYLVACLHlrveipeetgidralyegipqapklvkpppsqtssgrstpvpvkdrqklgmEGgSRRPEAREAMVESISALVRIPTFMAELFRNYDCD 588
                 *********999******************************999999988888887766542245566****************************** PP

      Sec7_N 153 eeakn 157
                 e++++
  KKY18687.1 589 EDRSD 593
                 *9876 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.9
      Sec7_N   54 hpellqllkqklcplLlknlsespsfpvferslrivllLlkkfr 97  
                  +++ ++l+ +++   L   +++s++ + ++ + r+v+ Ll+ ++
  KKY18687.1 1191 NKDTMELVGEEVTATLQNTVRDSSNLHPLV-ISRVVHYLLSFMK 1233
                  566677777777777777776665555554.5577777776655 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 1.6
      Sec7_N   58 lqllkqklcplLlknls...........espsfpvferslrivllLlkkfr 97  
                  +++  + l+pl+l +l+           +++  +  +++++++l+ l  ++
  KKY18687.1 1451 TAIFGEVLFPLILLLLKpevyqldpigmSETRVQAATLVCKVFLHYLVLLS 1501
                  555556677777777766666666666656666777777777777665555 PP

>> DCB  Dimerisation and cyclophilin-binding domain of Mon2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   1.8   8.5e-07    0.0051      51     174 ..     160     302 ..     139     305 .. 0.76
   2 ?   -2.2   0.3      0.48   2.9e+03      74     148 ..     423     502 ..     420     505 .. 0.67
   3 ?    1.6   0.0     0.033     2e+02      58      80 ..    1114    1136 ..    1084    1140 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 8.5e-07
         DCB  51 qslaea.seeilkPlllac..etknpkivqiaLgslqrLisheviseea..........iskiietlwkllelgve..ielkvLqtllllvttss..vv 132
                 ++++e+ ++++l+P+l+    ++ ++ i+++a+ ++ ++ ++++i++++             i++  +++ +++ +  + l++L+ +  ++++ +   +
  KKY18687.1 160 KNIQEFdAPSLLHPFLQVIrsSSTSAGITSLAVVAISKFFAYNLITKDSprislamqnlSAAITHCRFEASDSAADeiVLLRILKLMENIISRPEglLL 258
                 45555545899****987633778899*******************8888888885554556666666666665558999*************999455 PP

         DCB 133 hgdtlakalvlCfrLhfskdn..vvqntAaAtlrQlvsvvFeRv 174
                  +++l  ++ +  ++ ++ +   v    A  ++  + +v+FeR+
  KKY18687.1 259 GDQSLCAMMECGLSMCCQARLseVLRRSAEMAMANMTQVIFERL 302
                 556666666666888554433249999****************8 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.48
         DCB  74 kivqiaLgslq.rLisheviseeaiskiietlwkllelgvei....elkvLqtllllvttssvvhgdtlakalvlCfrLh 148
                 +i+++aL+     + sh  + + a +++   l++l+ ++  i     l+v  tll       ++++++ +  lv C +L 
  KKY18687.1 423 RIIDVALEVAGpSIASHPSLANLAKDDLCRYLFQLVRSENMIllngSLRVAGTLLATCRGVLKLQQELFLSYLVACLHLR 502
                 66777776554256678888888888888888888888666411224555555555555555788999999999999885 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.033
         DCB   58 eeilkPlllacetknpkivqiaL 80  
                   +il P +++ +tk+ + v iaL
  KKY18687.1 1114 LDILLPKIMSLSTKSIRHVVIAL 1136
                  689******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.01u 0.31s 00:00:01.32 Elapsed: 00:00:00.52
# Mc/sec: 9414.89
//
Query:       KKY18688.1  [L=266]
Description: putative serine threonine protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-13   50.5   0.8    3.4e-13   49.6   0.1    1.7  2  Pkinase      Protein kinase domain
      3e-10   39.8   0.5    1.5e-08   34.3   0.5    2.1  1  Pkinase_Tyr  Protein tyrosine kinase
    1.7e-05   24.8   0.3    4.2e-05   23.6   0.1    1.7  2  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.33   1.9e+03       4      18 ..      16      30 ..      14      37 .. 0.81
   2 !   49.6   0.1   5.7e-17   3.4e-13      43     147 ..      73     174 ..      60     182 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.33
                EEEEEEESSEEEEEE CS
     Pkinase  4 leklGeGsfGkVyka 18
                +e +G G++G V+k 
  KKY18688.1 16 DEIIGIGQTGIVIKQ 30
                689********9885 PP

  == domain 2  score: 49.6 bits;  conditional E-value: 5.7e-17
                 HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHH.HHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE CS
     Pkinase  43 kkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslseeeak.kiakqilegleylHskgiiHrDlKpeNiLidekgelKi 139
                 +++++E +i ++l+ h+ i+++++  +  d++ + + +++ + l+++l+  ++l++++ k +++k++++ l+y+Hs+++i  D   +Ni++d++ + K+
  KKY18688.1  73 QTLQKEKAIYRRLSnHSGIIQCLNLSS--DHYSIQMPLMQSD-LKNYLR--KNLPDKQRKlSWLKEMASTLSYIHSRCVIIGDYRLDNIMLDDQMNTKL 166
                 7899*********99********9876..889999*****66.*****7..47777777769******************************9999*** PP

                 -SGTTSEE CS
     Pkinase 140 tDFGlake 147
                 +DF  ++ 
  KKY18688.1 167 IDFSESTL 174
                 ***87765 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.5   2.5e-12   1.5e-08      46     243 ..      73     249 ..      66     260 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 2.5e-12
                  HHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEE CS
  Pkinase_Tyr  46 eelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvv 142
                  + l +e +i ++l +h  i+++l + +  +++ i + +++  dL+++Lrk+     + +++ls+  ++A+ ++y++s+ ++  d +  N++l++++  
   KKY18688.1  73 QTLQKEKAIYRRLsNHSGIIQCLNLSS--DHYSIQMPLMQ-SDLKNYLRKN---LPDKQRKLSWLKEMASTLSYIHSRCVIIGDYRLDNIMLDDQMNT 164
                  6788999999***9*********9988..45556677775.69*******9...7788999************************************* PP

                  EE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHH CS
  Pkinase_Tyr 143 kisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkk 240
                  k+ Df                ++ +p+ W  +   +e  f++ +D+  fGv + E++t  +  + +l++ +++ +   g r + p++    l ++++k
   KKY18688.1 165 KLIDFSE--------------STLMPLDWD-LQGADEWGFSVLTDIGQFGVAMLEMITGQHCEFDTLRDWDTVGATWPG-RDTLPSTNGVWLGHIIEK 246
                  *****63..............345688885.556677778888888888888888888666677777777766655444.334455556667777777 PP

                  HT- CS
  Pkinase_Tyr 241 cwe 243
                  cw+
   KKY18688.1 247 CWT 249
                  776 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.061   3.6e+02      37     106 ..      75     142 ..      73     143 .. 0.75
   2 !   23.6   0.1     7e-09   4.2e-05     130     205 ..     110     181 ..      96     219 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.061
                 HHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS..HHHHHHHHHHHHHHHHHHCCHH CS
         APH  37 irrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr..klsaaqlpellealgeflaalh 106
                 +++e a++r L+++   + ++l    + +++ + + l+++ + + +lr   ++ + +  +l +++++l  +h
  KKY18688.1  75 LQKEKAIYRRLSNHSG-IIQCLN--LSSDHYSIQMPLMQS-DLKNYLRknLPDKQRKLSWLKEMASTLSYIH 142
                 68999*******9988.778888..577777777999988.5566666576667777778888888887777 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 7e-09
                 HCHHHCCCGCCTCC.HHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC...TTEEEEE---TT-EEEECCHHH CS
         APH 130 esatarllaselld.lleeleeqvlaalaallpgelptvllHgDlhpgNllvd.pddgrvtGviDfedaglgpplyDl 205
                  s  +++l+ +l+d  +   +   +a  +   +   +++++ gD++++N+++d + +++   +iDf  ++l+p  +Dl
  KKY18688.1 110 QSDLKNYLRKNLPDkQRKLSWLKEMASTLSYIH---SRCVIIGDYRLDNIMLDdQMNTK---LIDFSESTLMPLDWDL 181
                 455567888888884333444445555666666...8****************444444...9*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.38s 00:00:01.00 Elapsed: 00:00:00.55
# Mc/sec: 1460.59
//
Query:       KKY18689.1  [L=871]
Description: putative pre-mrna-splicing factor syf1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-13   49.5  11.5        1.4    9.9   0.0   11.0 13  TPR_14       Tetratricopeptide repeat
    6.1e-13   49.4  13.9    8.8e-05   22.6   0.2    5.9  6  Suf          Suppressor of forked protein (Suf)
    1.1e-10   40.9   2.1     0.0028   17.8   0.0    7.0  7  TPR_8        Tetratricopeptide repeat
    3.4e-08   33.0   0.9    0.00026   20.3   0.1    4.4  5  TPR_15       Tetratricopeptide repeat
    7.8e-08   32.3  13.3       0.27   11.2   0.0    7.5  8  Mad3_BUB1_I  Mad3/BUB1 homology region 1
    4.8e-06   27.0   0.0         12    6.4   0.0    5.6  5  TPR_19       Tetratricopeptide repeat
    1.4e-05   25.3   6.8        4.2    7.7   0.0    6.7  6  TPR_12       Tetratricopeptide repeat
    6.9e-05   22.7  12.3        1.3    9.3   0.0    7.0  8  TPR_2        Tetratricopeptide repeat
    0.00045   20.0   1.3      0.011   15.5   0.3    3.1  3  RPN7         26S proteasome subunit RPN7
     0.0015   18.3   6.8        1.2    9.1   0.0    5.7  7  TPR_10       Tetratricopeptide repeat
     0.0084   16.4   1.4         25    5.5   0.0    4.9  5  TPR_17       Tetratricopeptide repeat
     0.0084   16.6   0.2       0.93   10.3   0.0    3.3  2  TPR_4        Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.083   12.0  16.4      0.063   12.4   0.2    5.9  6  NRDE-2       NRDE-2, necessary for RNA interference
          1   10.1   9.1         35    5.3   0.0    6.2  6  TPR_6        Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.023        29       4      41 ..      59      96 ..      56      99 .. 0.93
   2 ?    0.4   0.0       1.2   1.6e+03      22      42 ..     121     141 ..     118     144 .. 0.89
   3 ?   -0.1   0.0       1.9   2.4e+03       4      32 ..     137     165 ..     134     179 .. 0.81
   4 ?    0.7   0.0      0.99   1.3e+03      18      41 ..     186     209 ..     173     212 .. 0.86
   5 ?   -0.7   0.0       2.9   3.8e+03       6      29 ..     205     228 ..     200     233 .. 0.78
   6 !    9.9   0.0    0.0011       1.4       3      28 ..     286     311 ..     285     319 .. 0.90
   7 !    7.3   0.0    0.0079        10       2      29 ..     428     455 ..     427     470 .. 0.83
   8 ?    5.4   0.0     0.031        39       2      33 ..     466     496 ..     465     502 .. 0.84
   9 ?    1.9   0.0      0.42   5.4e+02       7      31 ..     557     581 ..     551     596 .. 0.82
  10 ?    0.8   0.0      0.91   1.2e+03      18      41 ..     605     630 ..     604     631 .. 0.70
  11 !    7.3   0.3    0.0074       9.5       4      30 ..     627     653 ..     624     661 .. 0.88
  12 ?    2.8   0.0      0.21   2.7e+02       7      24 ..     702     719 ..     697     738 .. 0.80
  13 ?   -1.5   0.4       5.1   6.5e+03      17      28 ..     817     828 ..     808     831 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.023
      TPR_14  4 llalaeallalGdpdeAiallrralalaPddaeawlll 41
                +la+ e+ +++G   e + + +ra+ + P +  +w ++
  KKY18689.1 59 WLAYIEFKRQQGTIHEQAFVMERACVQLPRSYKLWKQY 96
                9********************************99887 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.2
      TPR_14  22 allrralalaPddaeawllla 42 
                 al++ral l  + +++w ++ 
  KKY18689.1 121 ALFERALVLLNKMPVIWEMYL 141
                 689**************9885 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1.9
      TPR_14   4 llalaeallalGdpdeAiallrralalaP 32 
                 + +++ +l+++    + ++ +++al+  P
  KKY18689.1 137 WEMYLTFLMRQPLVTQTRRTFDKALRSLP 165
                 7899999****999999999999998655 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.99
      TPR_14  18 deAiallrralalaPddaeawlll 41 
                 ++A+++  r+ + +P+dae +++l
  KKY18689.1 186 ETAVKIWARYMQIHPEDAEDYIEL 209
                 569999999999*****9988877 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 2.9
      TPR_14   6 alaeallalGdpdeAiallrrala 29 
                 ++ e+l +   ++eA++ + ++l+
  KKY18689.1 205 DYIELLVETAHYKEAVQWYVKILD 228
                 688899999999999999877766 PP

  == domain 6  score: 9.9 bits;  conditional E-value: 0.0011
      TPR_14   3 allalaeallalGdpdeAiallrral 28 
                 ++  la ++ ++Gd+++A++++++ +
  KKY18689.1 286 LWTGLATYYITRGDFERARDIFEEGI 311
                 68889******************987 PP

  == domain 7  score: 7.3 bits;  conditional E-value: 0.0079
      TPR_14   2 eallalaeallalGdpdeAiallrrala 29 
                 e++  +a+++++ Gd++ A+ + ++a++
  KKY18689.1 428 ELWVNYAKFYEQGGDLENARIIMEKAVK 455
                 78999***************99999987 PP

  == domain 8  score: 5.4 bits;  conditional E-value: 0.031
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPd 33 
                 e++ + ae +l+++++d+A+++  +a + aP+
  KKY18689.1 466 EMWCEWAEMELRNDNFDRAVEIMTKATQ-APK 496
                 6788899**************9999965.665 PP

  == domain 9  score: 1.9 bits;  conditional E-value: 0.42
      TPR_14   7 laeallalGdpdeAiallrralala 31 
                 +a +l++   ++e+ ++++r l+ +
  KKY18689.1 557 YANLLEEHSYFEESFKVYERGLDVF 581
                 8999999999***********9865 PP

  == domain 10  score: 0.8 bits;  conditional E-value: 0.91
      TPR_14  18 deAiallrralalaP.dda.eawlll 41 
                 ++ ++l+++a++++P ++a +++l++
  KKY18689.1 605 ERLRDLFEQAVEDCPpQFAkTIYLMY 630
                 56789*********834443455655 PP

  == domain 11  score: 7.3 bits;  conditional E-value: 0.0074
      TPR_14   4 llalaeallalGdpdeAiallrralal 30 
                 +l+++ +++++G  + A+++++ra ++
  KKY18689.1 627 YLMYGNLEEERGLARHAMRIYERATRA 653
                 89**********************875 PP

  == domain 12  score: 2.8 bits;  conditional E-value: 0.21
      TPR_14   7 laeallalGdpdeAiall 24 
                  ae +++lG+ d+A+a++
  KKY18689.1 702 FAEMERRLGEIDRARAIY 719
                 588899*********998 PP

  == domain 13  score: -1.5 bits;  conditional E-value: 5.1
      TPR_14  17 pdeAiallrral 28 
                  ++A+a+l+r  
  KKY18689.1 817 SADAMAALERQA 828
                 478999999974 PP

>> Suf  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       3.6   4.6e+03      92     120 ..      78     103 ..      59     106 .. 0.59
   2 !   22.6   0.2   6.9e-08   8.8e-05      58     170 ..     122     234 ..     114     253 .. 0.84
   3 !    9.1   0.0    0.0009       1.1      78     120 ..     292     334 ..     270     343 .. 0.86
   4 !    7.4   0.1    0.0031       3.9      73     132 ..     430     490 ..     420     546 .. 0.83
   5 !   12.7   0.2   7.2e-05     0.092      32     146 ..     548     663 ..     519     702 .. 0.79
   6 !    9.2   0.0   0.00087       1.1       9     121 ..     596     746 ..     594     829 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.6
         Suf  92 lfekvvsklskekeakelykkfleyestf 120
                 ++e++  +l       +l+k++l + +++
  KKY18689.1  78 VMERACVQLPRS---YKLWKQYLTFRTKH 103
                 455555555444...48899988887765 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 6.9e-08
         Suf  58 IFelGlKkFpedeefvlkYldyLislnddnnaRvlfekvvsklskekeakelykkfleyestfgdlssilklekRmeelfpe..dskleqfvdRYklkn 154
                  Fe++l + ++ +     Yl +L++   ++++R +f+k++++l   +  + ++k fl+++   g     +k+ +R+ ++ pe  ++ +e++v+  ++k+
  KKY18689.1 122 LFERALVLLNKMPVIWEMYLTFLMRQPLVTQTRRTFDKALRSLPVTQ-HNRIWKLFLRFANSAGGET-AVKIWARYMQIHPEdaEDYIELLVETAHYKE 218
                 699999999999999999***************************99.9***********9999654.568999********66677888887777777 PP

         Suf 155 ldpikkrelksetkqe 170
                   +  ++ l+++++  
  KKY18689.1 219 AVQWYVKILDNPKYIS 234
                 6666666666666555 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0009
         Suf  78 dyLislnddnnaRvlfekvvsklskekeakelykkfleyestf 120
                  y i   d ++aR +fe+ +++++  ++   +++ ++e+e  +
  KKY18689.1 292 TYYITRGDFERARDIFEEGITTVMTVRDFTMIFDAYVEFEESI 334
                 5888999******************999***********9754 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0031
         Suf  73 vlkYldyLislnddnnaRvlfekvvsklskeke.akelykkfleyestfgdlssilklekR 132
                  ++Y ++  +  d +naR ++ek+v+ + k  + + e++  ++e e +  + +  +++ ++
  KKY18689.1 430 WVNYAKFYEQGGDLENARIIMEKAVKVPYKSVAeLAEMWCEWAEMELRNDNFDRAVEIMTK 490
                 579***********************97766544999999999999888777776666555 PP

  == domain 5  score: 12.7 bits;  conditional E-value: 7.2e-05
         Suf  32 rltyevyvasA.llEyyiskdkkvAtkIFelGlKkFpedeefvlkYldyLislndd....nnaRvlfekvvsklskekeakelykkfleyestfgdlss 125
                   t + +v  A llE + + +++  +k++e+Gl  F+   +f l +  yL++  d     +++R lfe++v+   ++  ak +y  + + e + g    
  KKY18689.1 548 IATPQTFVNYAnLLEEHSYFEES--FKVYERGLDVFSYPVAFELWN-TYLTKAVDRkigiERLRDLFEQAVEDCPPQF-AKTIYLMYGNLEEERGLARH 642
                 55667788877567888788888..*****************9976.799999886333369****************.************99999999 PP

         Suf 126 ilklekRmeelfpedskleqf 146
                    + +R   ++++ + +e f
  KKY18689.1 643 AMRIYERATRAVSDADRMEMF 663
                 999999999999886555544 PP

  == domain 6  score: 9.2 bits;  conditional E-value: 0.00087
         Suf   9 rasrRaeGikgaRkvFkkARkk..prltyevyvasAllEyyiskdkkvAtkIFelGlKkFpedeefvlkYldyLislndd....nnaRvlfekvvskls 101
                 +a+ R  Gi+  R  F++A ++  p+    +y   + lE      ++ A++I+e++ +  ++     ++  d+ i    +    +++R ++e+++ +l 
  KKY18689.1 596 KAVDRKIGIERLRDLFEQAVEDcpPQFAKTIYLMYGNLEEE-RGLARHAMRIYERATRAVSDADR--MEMFDFYITKSASnfglTSTRPIYERAIGALP 691
                 67789999***********976447888899*******999.555566*********99987765..4445555555444122279************9 PP

         Suf 102 keke...................................akelykkfleyestfg 121
                 ++++                                   +   ++k+  +e ++g
  KKY18689.1 692 DKEAsemclrfaemerrlgeidraraiyghgsqfcdprtSPTFWQKWEAFEVQHG 746
                 9995555555555555555555555555555555555555555555555555555 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0       1.1   1.4e+03      12      28 ..     211     227 ..     208     229 .. 0.80
   2 !    8.7   0.0    0.0017       2.2       2      28 ..     285     311 ..     284     312 .. 0.91
   3 !   17.8   0.0   2.1e-06    0.0028       2      29 ..     428     455 ..     427     459 .. 0.94
   4 ?    1.8   0.0      0.27   3.5e+02       2      29 ..     466     493 ..     465     496 .. 0.79
   5 ?    0.1   0.0      0.98   1.3e+03       4      28 ..     554     578 ..     551     580 .. 0.83
   6 ?    1.9   0.1      0.25   3.3e+02       3      29 ..     626     652 ..     625     653 .. 0.92
   7 ?   -0.1   0.0       1.1   1.5e+03       2      24 ..     697     719 ..     696     722 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 1.1
                 HHTT-HHHHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyekal 28 
                  ++  y+eA+++y k l
  KKY18689.1 211 VETAHYKEAVQWYVKIL 227
                 567789*******8876 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0017
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 +++  l+  y++ gd+e A   +e+ +
  KKY18689.1 285 KLWTGLATYYITRGDFERARDIFEEGI 311
                 67999*******************976 PP

  == domain 3  score: 17.8 bits;  conditional E-value: 2.1e-06
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekale 29 
                 e+++n ++ y++ gd+e+A   +eka++
  KKY18689.1 428 ELWVNYAKFYEQGGDLENARIIMEKAVK 455
                 79************************98 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.27
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekale 29 
                 e+++  +   l   +++ A+e + ka++
  KKY18689.1 466 EMWCEWAEMELRNDNFDRAVEIMTKATQ 493
                 566666666678899***********86 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.98
                 HHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekal 28 
                  +n ++++++   +ee+ ++ye+ l
  KKY18689.1 554 FVNYANLLEEHSYFEESFKVYERGL 578
                 67889999999999********987 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekale 29 
                 +y++ g++ ++ g    A+  ye+a++
  KKY18689.1 626 IYLMYGNLEEERGLARHAMRIYERATR 652
                 799*********************986 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 1.1
                 CHHHHHHHHHHHTT-HHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyy 24 
                 e++++ +   + lg+++ A + y
  KKY18689.1 697 EMCLRFAEMERRLGEIDRARAIY 719
                 678888999999********998 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.13   1.6e+02     148     187 ..      58      97 ..      46     101 .. 0.89
   2 ?   -2.2   0.0       1.5   1.9e+03      65      98 ..     187     221 ..     137     225 .. 0.76
   3 !    6.3   0.0    0.0037       4.8     130     179 ..     411     460 ..     276     469 .. 0.73
   4 !   20.3   0.1     2e-07   0.00026      13     177 ..     470     655 ..     461     662 .. 0.87
   5 ?   -3.3   0.0       3.1     4e+03      13      47 ..     701     735 ..     693     751 .. 0.53

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.13
      TPR_15 148 fllaraelyrqegqtdaAlrdyreAlalapdsselraall 187
                  +la++e++rq+g   +   ++++A +  p s +l +++l
  KKY18689.1  58 PWLAYIEFKRQQGTIHEQAFVMERACVQLPRSYKLWKQYL 97 
                 5**************99999*****999999998888876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.5
      TPR_15  65 kAyrqLlasgkaraedyerliel.lydaepkeaar 98 
                 +A +  ++  +  +ed+e  iel  ++a +kea++
  KKY18689.1 187 TAVKIWARYMQIHPEDAEDYIELlVETAHYKEAVQ 221
                 45555555556677788888888668888888876 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0037
      TPR_15 130 aellksleeeeaaeqsaafllaraelyrqegqtdaAlrdyreAlalapds 179
                  + ++ + +++a+ +    ++ +a++y+q g+ ++A  ++++A++++ +s
  KKY18689.1 411 TSAIAAIHPKKAVGKFHELWVNYAKFYEQGGDLENARIIMEKAVKVPYKS 460
                 5667777788888888899*************************998775 PP

  == domain 4  score: 20.3 bits;  conditional E-value: 2e-07
      TPR_15  13 klatllykqgdvkkAlevLkeaaqkaapskdt..................eyWrtladLAwalqqedearkAyrqLlasgkaraedyerliel.lydae 92 
                 ++a++ ++++++++A e++  +a +a p++ t                  + W ++ dL  ++   ++++k y ++++ + a++++  +  +l  +++ 
  KKY18689.1 470 EWAEMELRNDNFDRAVEIMT-KATQA-PKRSTvdyfdetlspqqrvhkswKCWSFYVDLVESVGTLEDTKKVYDRIIELRIATPQTFVNYANLlEEHSY 566
                 89*****************4.44444.66666789999*******************************************************568999 PP

      TPR_15  93 pkeaarlaekgwrrfrsprlLssalellerakd....ydriaellksleeeeaaeqsaafllaraelyrqegqtdaAlrdyreAlalap 177
                 ++e+ ++ e g + f  p  ++    +l++a d    ++r+++l++++ e+   +   +++l++++l++++g    A+r+y++A ++  
  KKY18689.1 567 FEESFKVYERGLDVFSYPVAFELWNTYLTKAVDrkigIERLRDLFEQAVEDCPPQFAKTIYLMYGNLEEERGLARHAMRIYERATRAVS 655
                 9999999999999999888887777777777772223579*********999999999**************************87655 PP

  == domain 5  score: -3.3 bits;  conditional E-value: 3.1
      TPR_15  13 klatllykqgdvkkAlevLkeaaqkaapskdteyW 47 
                 ++a++  + g++++A ++   + q  +p +   +W
  KKY18689.1 701 RFAEMERRLGEIDRARAIYGHGSQFCDPRTSPTFW 735
                 44444444444444444444444444444444444 PP

>> Mad3_BUB1_I  Mad3/BUB1 homology region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.29   3.7e+02      67     108 ..      56      98 ..      39     107 .. 0.72
   2 ?    0.9   0.1      0.33   4.2e+02      66      89 ..     188     212 ..     169     226 .. 0.71
   3 !    6.4   0.0    0.0065       8.4      97     124 .]     284     311 ..     271     311 .. 0.91
   4 !    7.4   0.0    0.0031         4      82     124 .]     412     454 ..     396     454 .. 0.83
   5 ?    5.8   0.1      0.01        13      94     123 ..     462     491 ..     458     492 .. 0.91
   6 !   11.2   0.0   0.00021      0.27      68     124 .]     518     578 ..     507     578 .. 0.89
   7 ?   -1.1   0.0       1.4   1.8e+03      98     123 ..     625     650 ..     604     651 .. 0.86
   8 ?   -0.3   0.1      0.76   9.7e+02     118     123 ..     645     650 ..     622     722 .. 0.58

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.29
                  HHHHHHHHTTSS-HHHHHHHHH.HHTTSTTBHHHHHHHHHHHH CS
  Mad3_BUB1_I  67 lklwlkyadlveepreifkfla.skkiGtklalfYeewAelle 108
                  +k wl y+++ +++ +i ++ +  ++ + +l   Y+ w ++l 
   KKY18689.1  56 IKPWLAYIEFKRQQGTIHEQAFvMERACVQLPRSYKLWKQYLT 98 
                  6789999999988888887654145678888888888887775 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.33
                  HHHHHHHHHTTS.S-HHHHHHHHHH CS
  Mad3_BUB1_I  66 ylklwlkyadlv.eepreifkflas 89 
                   +k+w +y+++  e+++++ + l +
   KKY18689.1 188 AVKIWARYMQIHpEDAEDYIELLVE 212
                  5899999999883445555555544 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0065
                  HHHHHHHHHHHHHTT-HHHHHHHHHHH. CS
  Mad3_BUB1_I  97 alfYeewAellekkgrfkeAeevyelGi 124
                   ++++  A+++ ++g+f++A++++e+Gi
   KKY18689.1 284 GKLWTGLATYYITRGDFERARDIFEEGI 311
                  578999*********************8 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0031
                  HHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH. CS
  Mad3_BUB1_I  82 eifkflaskkiGtklalfYeewAellekkgrfkeAeevyelGi 124
                  +  + ++ kk   k+ +++ ++A+++e+ g++++A+ ++e+++
   KKY18689.1 412 SAIAAIHPKKAVGKFHELWVNYAKFYEQGGDLENARIIMEKAV 454
                  55566677777789999*********************99985 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.01
                  TTBHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
  Mad3_BUB1_I  94 tklalfYeewAellekkgrfkeAeevyelG 123
                   +la+++ ewAe+  ++++f++A e+++++
   KKY18689.1 462 AELAEMWCEWAEMELRNDNFDRAVEIMTKA 491
                  579***********************9875 PP

  == domain 6  score: 11.2 bits;  conditional E-value: 0.00021
                  HHHHHHHTTS......S-HHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH. CS
  Mad3_BUB1_I  68 klwlkyadlv......eepreifkflaskkiGtklalfYeewAellekkgrfkeAeevyelGi 124
                  k+w  y+dlv      e+ +++++ +++ +i t   + + ++A+lle+++ f+e+ +vye+G+
   KKY18689.1 518 KCWSFYVDLVesvgtlEDTKKVYDRIIELRIAT--PQTFVNYANLLEEHSYFEESFKVYERGL 578
                  778888888888888899*************87..57899*********************96 PP

  == domain 7  score: -1.1 bits;  conditional E-value: 1.4
                  HHHHHHHHHHHHTT-HHHHHHHHHHH CS
  Mad3_BUB1_I  98 lfYeewAellekkgrfkeAeevyelG 123
                   +Y  + +l e++g  ++A ++ye++
   KKY18689.1 625 TIYLMYGNLEEERGLARHAMRIYERA 650
                  6799999****************975 PP

  == domain 8  score: -0.3 bits;  conditional E-value: 0.76
                  HHHHHH CS
  Mad3_BUB1_I 118 evyelG 123
                  ++ye++
   KKY18689.1 645 RIYERA 650
                  444432 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.2   1.5e+03      30      48 ..     205     223 ..     186     230 .. 0.70
   2 ?    5.0   0.0     0.028        36      23      49 ..     282     308 ..     275     311 .. 0.87
   3 ?    5.6   0.0     0.018        22      21      53 ..     423     455 ..     405     467 .. 0.77
   4 ?    0.9   0.0      0.54   6.9e+02       3      24 ..     477     497 ..     472     502 .. 0.68
   5 !    6.4   0.0    0.0097        12      11      47 ..     680     718 ..     676     721 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.2
      TPR_19  30 lLAeallalgqldeAealL 48 
                 +++e+l+++ +++eA +  
  KKY18689.1 205 DYIELLVETAHYKEAVQWY 223
                 5679999999999998865 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.028
      TPR_19  23 knaearllLAeallalgqldeAealLd 49 
                 + + ++ +LA  ++  g+++ A+++ +
  KKY18689.1 282 QRGKLWTGLATYYITRGDFERARDIFE 308
                 5678999****************9976 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.018
      TPR_19  21 dpknaearllLAeallalgqldeAealLdalpe 53 
                   k  e++ ++A+ + + g+l+ A+ +++++ +
  KKY18689.1 423 VGKFHELWVNYAKFYEQGGDLENARIIMEKAVK 455
                 455889*******************99988765 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.54
      TPR_19   3 aegdyaeAlalleqalqedpkn 24 
                  + ++++A++++++a +++pk 
  KKY18689.1 477 RNDNFDRAVEIMTKA-TQAPKR 497
                 556778888888887.555665 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.0097
      TPR_19  11 lalleqalqedpk..naearllLAeallalgqldeAeal 47 
                  +++e+a+ + p+   +e  l+ Ae    lg++d A+a+
  KKY18689.1 680 RPIYERAIGALPDkeASEMCLRFAEMERRLGEIDRARAI 718
                 579999999988877999999****************97 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.5     2e+03      55      72 ..     210     227 ..     208     229 .. 0.75
   2 !    7.7   0.0    0.0033       4.2      48      71 ..     287     310 ..     278     313 .. 0.82
   3 !    7.7   0.1    0.0034       4.4       5      73 ..     429     493 ..     426     497 .. 0.78
   4 ?   -0.7   0.0       1.4   1.8e+03      47      73 ..     553     579 ..     533     582 .. 0.67
   5 ?    2.7   0.3      0.12   1.5e+02      54      76 ..     626     648 ..     621     654 .. 0.71
   6 ?    1.0   0.0      0.42   5.4e+02       9      26 ..     702     719 ..     696     725 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.5
      TPR_12  55 yralgryeeAlelleeal 72 
                 + ++ +y+eA++++ + l
  KKY18689.1 210 LVETAHYKEAVQWYVKIL 227
                 557789999999997766 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0033
      TPR_12  48 lrnLgrlyralgryeeAlelleea 71 
                   +L+++y  +g++e A++++ee 
  KKY18689.1 287 WTGLATYYITRGDFERARDIFEEG 310
                 568999999999999999999986 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0034
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 +++n+a ++ + g+++ A+ + eka+ +      +  +++a+  +  +++ ++ ++++ A+e+ ++a++
  KKY18689.1 429 LWVNYAKFYEQGGDLENARIIMEKAVKVPY----KSVAELAEMWCEWAEMELRNDNFDRAVEIMTKATQ 493
                 678999999999999999999999988772....33566888888888888888888888888888776 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 1.4
      TPR_12  47 tlrnLgrlyralgryeeAlelleeala 73 
                 t  n++ l+++   +ee  + +e+ l+
  KKY18689.1 553 TFVNYANLLEEHSYFEESFKVYERGLD 579
                 555666666666666666666666665 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.12
      TPR_12  54 lyralgryeeAlelleealaiae 76 
                 +y++ g++ee + l ++a++i+e
  KKY18689.1 626 IYLMYGNLEEERGLARHAMRIYE 648
                 46777777777777777777776 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.42
      TPR_12   9 laavlrrlgrydeAlell 26 
                  a+++rrlg+ d A++++
  KKY18689.1 702 FAEMERRLGEIDRARAIY 719
                 688888888888888887 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.83   1.1e+03      16      28 ..     215     227 ..     208     228 .. 0.81
   2 !    9.3   0.0     0.001       1.3       2      28 ..     285     311 ..     284     312 .. 0.91
   3 !    8.1   0.1    0.0025       3.2       2      29 ..     428     455 ..     427     456 .. 0.94
   4 ?    5.3   0.0      0.02        25       1      28 [.     465     492 ..     465     494 .. 0.90
   5 ?    1.0   0.0      0.46   5.9e+02       5      29 ..     555     579 ..     551     581 .. 0.87
   6 ?   -3.1   0.0       9.5   1.2e+04      22      32 ..     609     619 ..     608     619 .. 0.76
   7 ?   -2.8   0.2       7.7   9.9e+03      11      27 ..     634     650 ..     626     653 .. 0.54
   8 ?   -2.2   0.0         5   6.4e+03      12      24 ..     707     719 ..     701     720 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.83
       TPR_2  16 dyeeAleafekAl 28 
                 +y+eA++++ k l
  KKY18689.1 215 HYKEAVQWYVKIL 227
                 7999999998876 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.001
       TPR_2   2 ealynlGlayyklgdyeeAleafekAl 28 
                 +++  l+  y+ +gd+e+A++ fe+ +
  KKY18689.1 285 KLWTGLATYYITRGDFERARDIFEEGI 311
                 57999******************9965 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0025
       TPR_2   2 ealynlGlayyklgdyeeAleafekAle 29 
                 e++ n ++ y++ gd+e A+  +ekA++
  KKY18689.1 428 ELWVNYAKFYEQGGDLENARIIMEKAVK 455
                 79************************97 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.02
       TPR_2   1 aealynlGlayyklgdyeeAleafekAl 28 
                 ae ++++++  ++++++++A+e + kA 
  KKY18689.1 465 AEMWCEWAEMELRNDNFDRAVEIMTKAT 492
                 577999*****************99996 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.46
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                  n ++++++   +ee  + +e+ l 
  KKY18689.1 555 VNYANLLEEHSYFEESFKVYERGLD 579
                 68899999999**********9885 PP

  == domain 6  score: -3.1 bits;  conditional E-value: 9.5
       TPR_2  22 eafekAleldP 32 
                 ++fe+A+e +P
  KKY18689.1 609 DLFEQAVEDCP 619
                 68999998665 PP

  == domain 7  score: -2.8 bits;  conditional E-value: 7.7
       TPR_2  11 yyklgdyeeAleafekA 27 
                  +++g    A + +e+A
  KKY18689.1 634 EEERGLARHAMRIYERA 650
                 55555555566666666 PP

  == domain 8  score: -2.2 bits;  conditional E-value: 5
       TPR_2  12 yklgdyeeAleaf 24 
                 ++lg+ ++A++ +
  KKY18689.1 707 RRLGEIDRARAIY 719
                 799******9865 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.7     6e+03      44      65 ..     208     229 ..     203     250 .. 0.69
   2 ?    1.1   0.0      0.21   2.8e+02      39      62 ..     287     310 ..     280     328 .. 0.80
   3 !   15.5   0.3   8.3e-06     0.011      38     143 ..     429     554 ..     425     661 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.7
                 HHHHHCT-HHHHHHHHHTCCCC CS
        RPN7  44 ehYlkigdleeAlkaysrirey 65 
                 e  +++ +++eA+++y +i++ 
  KKY18689.1 208 ELLVETAHYKEAVQWYVKILDN 229
                 5666677788888888888875 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.21
                 HHHHHHHHHHCT-HHHHHHHHHTC CS
        RPN7  39 kldlaehYlkigdleeAlkaysri 62 
                 +  la +Y++ gd+e A   +++ 
  KKY18689.1 287 WTGLATYYITRGDFERARDIFEEG 310
                 566899**********99998884 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 8.3e-06
                 HHHHHHHHHHHCT-HHHHHHHHHT.CCCC--SHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHCSSS---....................HHHHHHHH CS
        RPN7  38 akldlaehYlkigdleeAlkaysr.ireyctslkhkidmllnlirvaiffndwdlvskylekakellekggd...................werknrlk 116
                 ++ + a++Y + gdle+A   +++ +  +  s    ++m+ ++ ++++   ++d + + + ka +  ++                      w+    l 
  KKY18689.1 429 LWVNYAKFYEQGGDLENARIIMEKaVKVPYKSVAELAEMWCEWAEMELRNDNFDRAVEIMTKATQAPKRSTVdyfdetlspqqrvhkswkcWSFYVDLV 527
                 677899******************56668999999******************************9999433577777777666666666644444444 PP

                 HHHHHHHHHTT-HHHHHHHHCTS-GGG CS
        RPN7 117 vyeGlallairkfkeAaellldilstf 143
                  + G+++++ + + +  el ++++ tf
  KKY18689.1 528 ESVGTLEDTKKVYDRIIELRIATPQTF 554
                 444444444444444444444444444 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       7.4   9.5e+03      18      27 ..     216     225 ..     212     227 .. 0.74
   2 !    9.1   0.0   0.00092       1.2       8      30 ..     290     312 ..     288     313 .. 0.91
   3 ?    4.0   0.0     0.038        49       7      31 ..     432     456 ..     431     463 .. 0.85
   4 ?   -3.0   0.0         6   7.7e+03      16      28 ..     479     491 ..     474     493 .. 0.79
   5 ?   -3.2   0.0       6.8   8.7e+03      24      34 ..     566     576 ..     564     578 .. 0.85
   6 ?    2.6   0.4       0.1   1.3e+02      16      35 ..     631     650 ..     627     650 .. 0.92
   7 ?   -0.2   0.1      0.82     1e+03       9      25 ..     703     719 ..     702     721 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 7.4
      TPR_10  18 ydeAeallee 27 
                 y+eA++++ +
  KKY18689.1 216 YKEAVQWYVK 225
                 7889988865 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00092
      TPR_10   8 LanalrqrgrydeAealleeala 30 
                 La ++  rg++++A++++ee + 
  KKY18689.1 290 LATYYITRGDFERARDIFEEGIT 312
                 9******************9775 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.038
      TPR_10   7 NLanalrqrgrydeAealleealai 31 
                 N a  + q g+++ A+ ++e+a+ +
  KKY18689.1 432 NYAKFYEQGGDLENARIIMEKAVKV 456
                 667789999*************987 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 6
      TPR_10  16 grydeAealleea 28 
                  ++d+A++++ +a
  KKY18689.1 479 DNFDRAVEIMTKA 491
                 5889999998776 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 6.8
      TPR_10  24 lleealairrr 34 
                 ++ee+  +++r
  KKY18689.1 566 YFEESFKVYER 576
                 899***99998 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.1
      TPR_10  16 grydeAealleealairrrl 35 
                 g+++e + l+++a++i++r+
  KKY18689.1 631 GNLEEERGLARHAMRIYERA 650
                 78999999**********96 PP

  == domain 7  score: -0.2 bits;  conditional E-value: 0.82
      TPR_10   9 analrqrgrydeAeall 25 
                 a + r++g+ d+A+a++
  KKY18689.1 703 AEMERRLGEIDRARAIY 719
                 567899*********98 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       2.8   3.6e+03      11      25 ..     117     131 ..     116     132 .. 0.85
   2 ?    5.5   0.0      0.02        25      14      33 ..     285     304 ..     280     305 .. 0.92
   3 ?    5.1   0.0     0.026        34      14      33 ..     428     447 ..     415     448 .. 0.91
   4 ?   -2.8   0.0       8.8   1.1e+04      16      33 ..     468     485 ..     463     486 .. 0.70
   5 ?   -1.9   0.0       4.6   5.9e+03       2      27 ..     611     638 ..     610     642 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.8
      TPR_17  11 nnadaynnLAelllk 25 
                 n ++a++++A +ll+
  KKY18689.1 117 NKVNALFERALVLLN 131
                 56899******9987 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.02
      TPR_17  14 daynnLAelllknGdlmtAr 33 
                 ++++ LA+++  +Gd+++Ar
  KKY18689.1 285 KLWTGLATYYITRGDFERAR 304
                 57999**************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.026
      TPR_17  14 daynnLAelllknGdlmtAr 33 
                 +++ n+A+++++ Gdl+ Ar
  KKY18689.1 428 ELWVNYAKFYEQGGDLENAR 447
                 79**************9997 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 8.8
      TPR_17  16 ynnLAelllknGdlmtAr 33 
                 +++ Ae  l+n ++++A+
  KKY18689.1 468 WCEWAEMELRNDNFDRAV 485
                 555567777999999997 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 4.6
      TPR_17   2 ylkaleldPnn..adaynnLAelllknG 27 
                 +++a+e +P       y ++++l +++G
  KKY18689.1 611 FEQAVEDCPPQfaKTIYLMYGNLEEERG 638
                 6667766643334456777777776665 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00072      0.93       6      26 .]     289     309 ..     286     309 .. 0.91
   2 ?    2.4   0.2      0.26   3.4e+02       9      23 ..     704     718 ..     703     720 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00072
       TPR_4   6 aLArallalGdldeAraller 26 
                 +LA  +  +Gd+++Ar+++e+
  KKY18689.1 289 GLATYYITRGDFERARDIFEE 309
                 79***************9986 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.26
       TPR_4   9 rallalGdldeAral 23 
                 +   +lG+ d+Ara+
  KKY18689.1 704 EMERRLGEIDRARAI 718
                 56679********97 PP

>> NRDE-2  NRDE-2, necessary for RNA interference
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   4.9e-05     0.063      93     137 ..      81     132 ..      59     135 .. 0.87
   2 ?    4.6   0.1     0.012        15      86     143 ..     118     172 ..     117     201 .. 0.80
   3 ?   -0.8   0.1       0.5   6.4e+02      95     122 ..     234     261 ..     203     282 .. 0.74
   4 ?    1.4   0.5      0.11   1.4e+02     100     204 ..     463     563 ..     401     577 .. 0.72
   5 ?    1.4   0.1      0.11   1.4e+02      94     143 ..     580     626 ..     558     662 .. 0.63
   6 ?    0.7   0.1      0.18   2.3e+02      85     137 ..     715     783 ..     632     805 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.9e-05
      NRDE-2  93 ellkenpnsvkLWreyldfrqsnfasf.......svekvkelyekclrtlsa 137
                 ++  + p s+kLW++yl fr++++++        +++kv++l+e++l  l++
  KKY18689.1  81 RACVQLPRSYKLWKQYLTFRTKHLQKRsptaykpEFNKVNALFERALVLLNK 132
                 55568899*****************9999999999**********9988876 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.012
      NRDE-2  86 klakeWeellkenpnsvkLWreyldfrqsnfasfsvekvkelyekclrtlsaklegrk 143
                 k+++ +e++l   ++   +W+ yl f ++   +  v+++++++ k+lr+l   +++r+
  KKY18689.1 118 KVNALFERALVLLNKMPVIWEMYLTFLMR---QPLVTQTRRTFDKALRSLPVTQHNRI 172
                 677788888888888999***********...5569999999****999988777665 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.5
      NRDE-2  95 lkenpnsvkLWreyldfrqsnfasfsve 122
                  k+ +++++LW e ++   ++ ++f  +
  KKY18689.1 234 SKNAKSNFQLWSEMVELLVNKAKEFGTQ 261
                 3355589999999999999999888654 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.11
      NRDE-2 100 nsvkLWreyldfrqsnfasfsvekvkelyekclrtlsaklegrkvshkaeeeteeellyvllrlcrflrqaGysErAvalwQAliElnlfrPsslsnqe 198
                 +  ++W e+ ++++    + ++++  e+++k+ ++ ++++ +   ++ + +++ ++  ++ + ++ +++  G  E    ++  +iEl + +P++++n +
  KKY18689.1 463 ELAEMWCEWAEMEL---RNDNFDRAVEIMTKATQAPKRSTVDYFDETLSPQQRVHKSWKCWSFYVDLVESVGTLEDTKKVYDRIIELRIATPQTFVNYA 558
                 33445555555555...5778999999999999999999999999888888888899999999999999999999999999999999999999998855 PP

      NRDE-2 199 eltlke 204
                 +l l+e
  KKY18689.1 559 NL-LEE 563
                 55.444 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.11
      NRDE-2  94 llkenpnsvkLWreyldfrqsnfasfsvekvkelyekclrtlsaklegrk 143
                 ++ ++p  ++LW++yl        ++ +e++++l+e++++    +  +++
  KKY18689.1 580 VF-SYPVAFELWNTYLTKAVD--RKIGIERLRDLFEQAVEDCPPQFAKTI 626
                 43.56889999**99999988..788999999999988876655555554 PP

  == domain 6  score: 0.7 bits;  conditional E-value: 0.18
      NRDE-2  85 e.................klakeWeellkenpnsvkLWreyldfrqsnfasfsvekvkelyekclrtlsa 137
                 +                 +  ++We++  ++  +++  +e l +++s  a+f++  +++++e  l +ls 
  KKY18689.1 715 AraiyghgsqfcdprtspTFWQKWEAFEVQHG-NEDTFKEMLRIKRSVQAQFKYVLFHHHLEAGLTNLST 783
                 24445555555555555566677776666544.5677777777777777777777666666666666665 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.27   3.4e+02       6      24 ..     290     308 ..     280     309 .. 0.84
   2 ?    5.3   0.0     0.027        35       5      28 ..     432     455 ..     428     456 .. 0.88
   3 ?    0.1   0.0       1.3   1.6e+03      10      27 ..     475     492 ..     468     495 .. 0.76
   4 ?   -2.1   0.2       6.3     8e+03       4      27 ..     628     651 ..     627     653 .. 0.72
   5 ?    0.8   0.1      0.75   9.5e+02       7      23 ..     703     719 ..     700     720 .. 0.82
   6 ?   -1.9   0.2       5.4     7e+03       6      24 ..     793     825 ..     792     826 .. 0.54

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAleale 24 
                 la  y+  gd ++A++++e
  KKY18689.1 290 LATYYITRGDFERARDIFE 308
                 566677768*********8 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.027
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlik 28 
                 + a+ y+++gd ++A+ ++e+ +k
  KKY18689.1 432 NYAKFYEQGGDLENARIIMEKAVK 455
                 6788899999**********9986 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6  10 yrklgdtdkAlealerli 27 
                  ++ ++ d+A+e++ +  
  KKY18689.1 475 ELRNDNFDRAVEIMTKAT 492
                 4455799******99875 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 6.3
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealerli 27 
                 ++ + + ++ g ++ A++++er  
  KKY18689.1 628 LMYGNLEEERGLARHAMRIYERAT 651
                 566667777667778999999875 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.75
                 HHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAleal 23 
                 a+  r+lg+ d+A++++
  KKY18689.1 703 AEMERRLGEIDRARAIY 719
                 66677899*******99 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 5.4
                 HHHHHHHH.............HHHH.HHHHHHH CS
       TPR_6   6 lalsyrkl.............gdtd.kAleale 24 
                 la+s++kl             g+t+ +A++ale
  KKY18689.1 793 LARSQQKLdaaatnganaehdGETSaDAMAALE 825
                 577777764555555554554444446666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (871 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.52
# Mc/sec: 5036.73
//
Query:       KKY18690.1  [L=276]
Description: putative vacuolar atp synthase subunit d [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-66  221.3   1.7    9.8e-66  221.3   1.7    1.7  2  ATP-synt_D  ATP synthase subunit D
  ------ inclusion threshold ------
      0.032   13.8   0.8      0.047   13.3   0.8    1.2  1  DUF2201_N   Putative metallopeptidase domain


Domain annotation for each model (and alignments):
>> ATP-synt_D  ATP synthase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.3   1.7   1.1e-69   9.8e-66       2     194 ..      17     215 ..      16     217 .. 0.94
   2 ?   -3.0   0.2      0.62   5.6e+03      42      62 ..     228     248 ..     224     270 .. 0.61

  Alignments for each domain:
  == domain 1  score: 221.3 bits;  conditional E-value: 1.1e-69
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHHHHHTTSTST.TSTSHHHHHHHSSS.SS-..TSS-SEEEEEEBTT CS
  ATP-synt_D   2 LirlkkrlklaqrghslLkkKrdaLilefr.......eilkelkelreeleeelkeayfslaea.faaggeediesavlesvklakvvkvelktenvaG 92 
                 L  +k +lk+a+ ghslLk+K++aL+++fr       +i++++++++++++++++ a+fslae+ +a+g   di ++++esvk+ak  +v++k++nv G
  KKY18690.1  17 LGLMKSKLKGAETGHSLLKRKSEALTKRFRgismrasKITRRIDDAKRKMGRVMQIAAFSLAEVsYAVG--GDIGYQIQESVKQAK-FRVKTKQDNVSG 112
                 778**************************9555555567899**********************99999..589999******999.************ PP

                 SEEEEEEE-...S.SSTSSSSSSSSTCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_D  93 Vkvpvfeleee.ksdstelygllrtgaqldeavealrellellvelasletslelLdeeikktnrRvNaLekvvIPrleetikyIkseLdEqereeffr 190
                 V +p+fe  +  +s+++ l+gl+++g+q+++++e++++++e+lvelasl+t++++Lde+ik++nrRvNa+e+v+IPr+e+tikyI+seLdE +reef+r
  KKY18690.1 113 VFLPQFEAFNVeGSSDFGLTGLGKGGQQVQRCRETYARAVETLVELASLQTAFVILDEVIKVVNRRVNAIEHVIIPRTENTIKYINSELDELDREEFYR 211
                 ******8766668999*********************************************************************************** PP

                 HHHH CS
  ATP-synt_D 191 lkkv 194
                 lkkv
  KKY18690.1 212 LKKV 215
                 ***8 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.62
                 HHHHHHHHHHHTTSTSTTSTS CS
  ATP-synt_D  42 eeleeelkeayfslaeafaag 62 
                  e++ + +ea ++ a+a ++g
  KKY18690.1 228 AEVAAAKEEADSKEAQASTNG 248
                 455555666666666665555 PP

>> DUF2201_N  Putative metallopeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.8   5.2e-06     0.047      95     190 ..     175     268 ..     161     275 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.2e-06
   DUF2201_N  95 iNetLiqagl.alPasavtlesvlreealaeldaerlytalggadrdgekkgdgekaakkkrsdspesarvgalatgfeadleesekgksseeeese 190
                 +N      ++ ++P+   t++ +  +++l+eld e++y+ l++  ++++++g  ++a++   +++++s  ++a  +g+    +es+ +++ ++  +e
  KKY18690.1 175 VNRRVNAIEHvIIPRTENTIKYI--NSELDELDREEFYR-LKKVSGKKQRDGAAREAEVAAAKEEADSKEAQASTNGTTTSENESKGAEEPTDILAE 268
                 56666666666778877777764..789**********7.546666666677777777777777777777777788888777777666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1184  (0.0660383); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.51
# Mc/sec: 1629.85
//
Query:       KKY18691.1  [L=269]
Description: putative small nuclear ribonucleoprotein u [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-25   87.5   0.2    2.9e-11   43.0   0.0    2.5  2  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    5.7e-05   22.7   0.0     0.0012   18.4   0.0    2.2  2  RRM_5         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
     0.0002   21.1   0.0        0.1   12.4   0.1    2.2  2  RRM_occluded  Occluded RNA-recognition motif
     0.0022   17.8   0.0     0.0045   16.8   0.0    1.4  1  DUF4523       Protein of unknown function (DUF4523)
  ------ inclusion threshold ------
      0.012   15.8   2.0        5.2    7.3   0.0    3.5  4  PHM7_cyt      Cytosolic domain of 10TM putative phosphate tra


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.1   1.4e-14   5.2e-11      13      68 ..      49     102 ..      33     104 .. 0.85
   2 !   43.0   0.0   8.2e-15   2.9e-11       1      70 []     198     263 ..     198     263 .. 0.97

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 1.4e-14
                 HHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE CS
       RRM_1  13 eeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggre 68 
                 e L e+Fs++G i  i+lv + + k+kg afV F++ e+A kA+e+ ng +l +++
  KKY18691.1  49 EALTEVFSEYGNI--IDLVAKTNLKAKGQAFVVFDDVESASKAIEEINGFELFDKP 102
                 567899*******..99999999****************************99886 PP

  == domain 2  score: 43.0 bits;  conditional E-value: 8.2e-15
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 lf++++p++++ e L+++Fs f+++k+++ v+    +  g+afVe++ +  A +A+ea  g+ lg ++++
  KKY18691.1 198 LFLRDIPESYDSEALSAIFSRFEGFKEVRTVP----QRPGIAFVEYDAEAGAISAKEATSGMALGEKRIR 263
                 799*****************************....6****************************99986 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.4e-07    0.0012      42     103 ..      49     112 ..       8     129 .. 0.76
   2 ?    2.1   0.0     0.037   1.3e+02      41      99 ..     209     267 ..     189     269 .] 0.85

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.4e-07
       RRM_5  42 dklFnlfclYgnverv..kflktkketalvqmgdasaveravqHLnnaklfgkrlevalSKqqa 103
                 + l  +f+ Ygn+  +  k     k++a+v   d  ++ +a++ +n+ +lf+k++ + + K ++
  KKY18691.1  49 EALTEVFSEYGNIIDLvaKTNLKAKGQAFVVFDDVESASKAIEEINGFELFDKPMVLDFAKTRS 112
                 567789******97652244445689*******************************9999876 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.037
       RRM_5  41 ldklFnlfclYgnvervkflktkketalvqmgdasaveravqHLnnaklfgkrlevalS 99 
                  + l  +f+ ++  + v+ + ++++ a+v+   +  +  a +  ++  l +kr++v+  
  KKY18691.1 209 SEALSAIFSRFEGFKEVRTVPQRPGIAFVEYDAEAGAISAKEATSGMALGEKRIRVTYQ 267
                 5677889999999999**************99888888899999999998889998865 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   2.9e-05       0.1       5      63 ..      34      98 ..      32     106 .. 0.78
   2 !    6.5   0.0    0.0021       7.6       2      70 ..     196     264 ..     195     268 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.9e-05
  RRM_occluded  5 sllplsDtvnkariralveek...egeikkivLvpdheG...AivefkdekiagkasLaLdgsef 63
                   + +l +++  a++ + ++e     g+i ++v  ++ ++   A+v+f+d+++a ka+ +++g e+
    KKY18691.1 34 QVRNLEERIKPAQLIEALTEVfseYGNIIDLVAKTNLKAkgqAFVVFDDVESASKAIEEINGFEL 98
                  566888888888876666666664399999999887655446****************9999986 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0021
  RRM_occluded   2 rtisllplsDtvnkariralveekegeikkivLvpdheG.AivefkdekiagkasLaLdgsefegkklrc 70 
                   +++ l ++++   ++ ++a+++   + +k++  vp+  G A+ve++ e+ a  a  a  g+ + +k++r+
    KKY18691.1 196 KILFLRDIPESYDSEALSAIFSRF-EGFKEVRTVPQRPGiAFVEYDAEAGAISAKEATSGMALGEKRIRV 264
                   67788899999999**********.************999********9999999999999999888887 PP

>> DUF4523  Protein of unknown function (DUF4523)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.3e-06    0.0045      89     143 ..      33      91 ..      17      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.3e-06
     DUF4523  89 ivvrWlkknlkptedlksviqrLsvfGpiesvt....lcGrqsavvvfkdiisackavs 143
                 i vr l+  +kp++  +++++  s +G+i  ++    l  +  a vvf+d+ sa+ka++
  KKY18691.1  33 IQVRNLEERIKPAQLIEALTEVFSEYGNIIDLVaktnLKAKGQAFVVFDDVESASKAIE 91 
                 889*************************9887511113567889*************97 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0015       5.2      96     140 ..      48      91 ..      26     109 .. 0.75
   2 ?    1.2   0.1       0.1   3.7e+02      48      76 ..     135     155 ..     126     180 .. 0.52
   3 ?    4.7   0.0    0.0091        33       3      28 ..     197     221 ..     195     231 .. 0.77
   4 ?   -1.6   0.0      0.79   2.8e+03     122     137 ..     232     247 ..     223     260 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0015
    PHM7_cyt  96 idyyrekleeldeeieeerekvkkkplgaaFvtfesersaaavak 140
                 i+ ++e   e   +i ++ +k++ k++g aFv f++ +sa ++++
  KKY18691.1  48 IEALTEVFSEYG-NIIDLVAKTNLKAKGQAFVVFDDVESASKAIE 91 
                 555555555554.344444667899***************99865 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.1
    PHM7_cyt  48 veerekavrkleaalskykkngkklpkkr 76 
                  +er++av++le          kkl+++ 
  KKY18691.1 135 EKERKQAVEALENQ--------KKLKRPA 155
                 34555566655544........3332222 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0091
    PHM7_cyt   3 TvlvtgiPkelrseeklkeffeelyp 28 
                  +++++iP+++  +e+l+ +f+++  
  KKY18691.1 197 ILFLRDIPESYD-SEALSAIFSRFEG 221
                 5899********.6779999988755 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.79
    PHM7_cyt 122 lgaaFvtfesersaaa 137
                  g+aFv+++ e  a +
  KKY18691.1 232 PGIAFVEYDAEAGAIS 247
                 5899***997654433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1848.07
//
Query:       KKY18692.1  [L=4322]
Description: putative dynein heavy chain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.6e-124  413.4   0.0   5.9e-123  410.0   0.0    2.9  3  AAA_6           Hydrolytic ATP binding site of dynein motor r
   1.9e-121  406.5   9.2   1.9e-121  406.5   9.2    4.5  4  DHC_N1          Dynein heavy chain, N-terminal region 1
   9.9e-119  397.0   2.4   9.9e-119  397.0   2.4    5.0  5  DHC_N2          Dynein heavy chain, N-terminal region 2
      1e-74  250.4   0.3      1e-74  250.4   0.3    4.6  5  AAA_9           ATP-binding dynein motor region
    8.5e-66  221.9   0.0    2.4e-65  220.5   0.0    1.9  1  AAA_8           P-loop containing dynein motor region D4
    2.3e-43  147.8   0.0    1.4e-36  125.7   0.0    4.8  5  AAA_7           P-loop containing dynein motor region
    6.5e-41  140.5   6.9    6.5e-41  140.5   6.9    2.8  3  MT              Microtubule-binding stalk of dynein motor
    1.6e-32  112.4   0.0    7.5e-12   45.4   0.0    6.3  5  AAA_5           AAA domain (dynein-related subfamily)
    3.3e-27   95.3   0.0    8.5e-27   94.0   0.0    1.8  1  AAA_lid_11      Dynein heavy chain AAA lid domain
    8.3e-16   58.3   0.3    3.8e-15   56.1   0.0    2.4  1  Dynein_AAA_lid  Dynein heavy chain AAA lid domain
    2.5e-15   56.6   1.6    8.5e-05   22.6   0.0    5.7  5  Dynein_heavy    Dynein heavy chain region D6 P-loop domain
    2.4e-12   47.3   3.6      0.013   15.8   0.0    6.3  5  AAA_22          AAA domain
    3.5e-12   46.9   1.7     0.0058   17.1   0.0    5.5  4  AAA             ATPase family associated with various cellula
    4.3e-08   33.4   7.6       0.27   11.4   0.0    5.3  4  AAA_33          AAA domain
    1.9e-07   31.6   1.1        1.3    9.4   0.0    6.8  4  AAA_16          AAA ATPase domain
      2e-07   31.6   8.8       0.17   12.4   0.0    6.2  5  AAA_18          AAA domain
    2.9e-05   23.3   0.0       0.13   11.2   0.0    3.7  3  T2SSE           Type II/IV secretion system protein
      8e-05   22.8   0.7     0.0066   16.6   0.0    3.3  2  AAA_lid_1       AAA+ lid domain
    0.00011   21.7   0.4        0.9    8.9   0.0    4.0  3  Mg_chelatase    Magnesium chelatase, subunit ChlI
     0.0002   20.8   0.0        1.7    8.0   0.0    3.7  3  FtsK_SpoIIIE    FtsK/SpoIIIE family
     0.0003   20.6   0.4         32    4.2   0.0    4.8  4  AAA_30          AAA domain
    0.00057   20.4   0.8        9.2    6.8   0.0    5.2  4  ABC_tran        ABC transporter
     0.0009   19.3   1.1     0.0009   19.3   1.1    3.9  1  BRE1            BRE1 E3 ubiquitin ligase
     0.0014   18.4   0.8        1.3    8.7   0.0    4.6  4  IstB_IS21       IstB-like ATP binding protein
     0.0015   18.2   0.0        2.3    8.1   0.0    3.6  3  AAA_29          P-loop containing region of AAA domain
     0.0028   18.0   8.5       0.55   10.6   0.0    5.6  4  AAA_19          AAA domain
     0.0058   16.4   2.8        8.1    6.1   0.0    4.7  4  AAA_24          AAA domain
  ------ inclusion threshold ------
       0.01   15.1   0.1         12    5.1   0.0    4.4  4  Zeta_toxin      Zeta toxin
      0.013   15.8   0.6         20    5.6   0.0    4.3  4  RNA_helicase    RNA helicase
      0.032   14.1   0.1         14    5.5   0.0    4.0  3  Rad17           Rad17 P-loop domain
      0.033   13.8   0.0       0.97    9.0   0.0    3.2  2  AAA_25          AAA domain
       0.18   11.8   3.7        8.9    6.4   0.3    4.2  3  Vps23_core      Vps23 core domain
       0.42   10.4  25.5       0.29   10.9   7.2    3.8  3  ERM             Ezrin/radixin/moesin family
       0.45   10.3  26.4        3.3    7.5   9.1    5.4  4  Phage_GP20      Phage minor structural protein GP20
        1.2    8.3  24.3         55    2.8  24.3    3.1  1  Taxilin         Myosin-like coiled-coil protein
        4.3    7.2   5.7         31    4.4   0.0    4.0  2  NACHT           NACHT domain


Domain annotation for each model (and alignments):
>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  410.0   0.0  1.2e-125  5.9e-123       1     327 []    1893    2233 ..    1893    2233 .. 0.95
   2 ?   -2.8   0.0       4.7   2.3e+03      36      49 ..    2585    2598 ..    2559    2629 .. 0.60
   3 ?   -3.2   0.1       6.4   3.2e+03     186     233 ..    3796    3843 ..    3793    3882 .. 0.62

  Alignments for each domain:
  == domain 1  score: 410.0 bits;  conditional E-value: 1.2e-125
       AAA_6    1 YgyeYlgnserLviTpltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldykslgkifkGlaqsGaWgCfdeFnrie 97  
                  YgyeYlg+ +rLv Tpltdrc+ltltqAl  +lgg+p+GpagtGKtE+vk L+ +l+++++vf c+d++d++++g+if G++q+GaWgCfdeFnr+e
  KKY18692.1 1893 YGYEYLGVPDRLVRTPLTDRCFLTLTQALCQRLGGSPYGPAGTGKTESVKALGLQLGRFTLVFCCDDTFDFQAMGRIFLGICQVGAWGCFDEFNRLE 1989
                  9************************************************************************************************ PP

       AAA_6   98 levLSvvaqqiktiqqalke....kkkkfvfegkeiklnksvgifitmnpgyagrteLPdnLkalfRpvammvPdlelIaeimLfseGfkeakelak 190 
                   ++LS+v+qqi++iq  l++     k+++++ g+++k+n+++gifitmnpgyagr++LPdnLk+lfR+vam  Pd elIae+mLfs+Gfk+akel+k
  KKY18692.1 1990 EKILSAVSQQIQNIQIGLRKgsddAKTQIELIGRHFKVNQNTGIFITMNPGYAGRSNLPDNLKKLFRSVAMSKPDKELIAEVMLFSQGFKTAKELSK 2086
                  ***************98876222257889999***************************************************************** PP

       AAA_6  191 klvtlykllseqlskqdhydfglralksvlkaagelkre........epees.....eeelllralrdvnlpklvaeDvplfkglisdlFpgvelpe 274 
                  + v +++ +s +l+kq hydfglralks+l+  g lkr+                  e +++++++r++  pkl++eDv  +  l +  Fpgv+   
  KKY18692.1 2087 QTVPFFDHCSAELTKQPHYDFGLRALKSILVSSGGLKRAriakgdgeA---AdtailEPQIVVQSIRETIAPKLIREDVDTLLFLQERDFPGVQYIP 2180
                  **************************************8554433321...1334448899************************************ PP

       AAA_6  275 sdyeeleeaieevlkekklqleekfvekviqlyetlkvrhgvmlvGetgsgKt 327 
                   d  +l +a+++++++++l +++ +++k+iqly++++++hgvm+vG +g+gK+
  KKY18692.1 2181 ADLGDLVNAMKKIAQDRHLVPTDLWISKAIQLYQIQQIHHGVMMVGGSGTGKS 2233
                  ****************************************************8 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.7
       AAA_6   36 apaGpagtGKtEtv 49  
                   + Gp g GKt t 
  KKY18692.1 2585 MLCGPPGSGKTMTL 2598
                  34566666666665 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 6.4
       AAA_6  186 kelakklvtlykllseqlskqdhydfglralksvlkaagel.kreepee 233 
                  + +a+   +++++l++    +++y+f+l+ +  + + + +  kr   +e
  KKY18692.1 3796 SIIAEACSAIFAILEQLHHLNHFYQFSLQYFVDIFNSVLHGnKRL-ANE 3843
                  56778888899999888888999*****98776666554442332.222 PP

>> DHC_N1  Dynein heavy chain, N-terminal region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  406.5   9.2  3.7e-124  1.9e-121       1     560 [.     264     840 ..     264     842 .. 0.92
   2 ?   -1.1   2.8       1.1   5.5e+02     155     306 ..    1086    1239 ..    1072    1421 .. 0.57
   3 ?   -0.1   0.3      0.57   2.8e+02     174     280 ..    1510    1623 ..    1475    1654 .. 0.72
   4 ?    0.5   0.1      0.35   1.8e+02     223     298 ..    3401    3496 ..    3357    3501 .. 0.59

  Alignments for each domain:
  == domain 1  score: 406.5 bits;  conditional E-value: 3.7e-124
      DHC_N1   1 vnaleslvieWikqIkevlkedsdgrkegplaEieFWrsreanLssieeqlkspevkkvlkvLkaakssyleafkaldtelkkaleeAkdnvkyLktLe 99 
                 +n+++++v++Wik+I++++k+++d++ e++ +Ei+FW s+e +L++ie+ql+s+ v +++++Lk+ak++ ++   + dt+lk+a++ +++++++++++ 
  KKY18692.1 264 LNSVQAHVNTWIKSIQSITKMSRDPECESAAQEINFWLSMEDALEGIEQQLRSDGVALTMEILKHAKRYQAALSFSADTGLKDAMDNVQKYNQLMREF- 361
                 6899****************************************************************555555666*********************. PP

      DHC_N1 100 kpledLest.dleeikellpsllnairliwkiSryYntperivsLlekisnqlieqckkylnpeelfgqeveeaikklkeaielleawkeeyeektrek 197
                  pl++L+s+ +l++++e+l+  +n++++ ++ +  Y + +r+++L+e+is +l +++++ l+++++++ + +e+ + +k+a +++++w++ ++ +  + 
  KKY18692.1 362 -PLNELLSApSLQKVQEALNLNFNHLNKRLRLC-PY-PIKRALALVEAISGDLDRKLHDLLKGRTIMHLDFREFSALMKNANQIWRTWDDNLK-EFTNV 456
                 .*******99***********************.**.9*****************************98999********************4.77777 PP

      DHC_N1 198 leespkekpwefdeksiFarldafleRlekllelfetieqfsklekvggtkgkelegq.......................ieeileefeeaveklksk 273
                  ++ +++++ +f   ++  r  + +eRl+++ ++++++eq+      +  ++ ++ g+                       ++ ++e + ea++ lk  
  KKY18692.1 457 ARDVTRKRNEKFIPIKVQPRHTKTMERLKYINTFRNNHEQL------Q-RTIVNVLGSkstnhasndvaadgavfleeigdVDAVEE-VAEAYAALK-- 545
                 777777888888888888899********************......2.33333333334444566788889999888887666666.888******.. PP

      DHC_N1 274 sydvLdvsaee...feadfkeFkerikdlerrlqaiinqafedasslesalellrkfesllerpkikaaleekytdllqmykeeleavkklfekqkenp 369
                 ++dvLdvs e+   + ++   ++er++++e+++++++++++++a+++++++ ++ kf+ ll rpk+++a++e++++ll+++ke++ +++++f++q  n 
  KKY18692.1 546 DVDVLDVSPEGtqlWVQAEITYNERTSRVENSIISRLRDRLATARTANEMFRVFSKFNALLVRPKVRGAISEYQSQLLDNVKEDIASLHERFKNQYGNS 644
                 **********9***********************************************************************************88776 PP

      DHC_N1 370 s..aplakn.mPpvaGaiiwarqlerrieepmekfee.egegllkteegkkvkkkynelakkLkeyerklfeeWleeveekseeklkrpLLvredettk 464
                 +   +++ + +Pp++Gaiiwarq+er+++ +m+k+e+ +ge+++ +++g+k++ + n ++kkL+  +r +fe+Wl++v  ++ +     L+++++++++
  KKY18692.1 645 EasMMAQLRdIPPISGAIIWARQIERQLDGYMKKVEAvLGEDWALHTDGEKLQLESNMFRKKLD--MRPVFEDWLHQVTRRNIS-IAGRLFAITRSRGA 740
                 6889999999**************************99**************************..***********9977777.5555****774444 PP

      DHC_N1 465 ....llevNFdpellallrEvkylqrlgfevPesakniakqeeklrkyaesLellvreynrilesllpver..pLlaeelkeldaklepGltklnWnsl 557
                      + vNFdp++ +l++Ev++l +l++++P+s++++ k+++++++ya+sL++++r++ ++ +++  + +   Ll++++++ +a++++G+  l+W+sl
  KKY18692.1 741 gnslEIIVNFDPQISSLFKEVRNLLWLNYQIPHSITSVSKEAKRVYPYAMSLMESIRMFVTTSRTVAGMSEdaSLLNNYQNDAQALVAKGIP-LRWESL 838
                 9999566***********************************************************9865556*******************.*****8 PP

      DHC_N1 558 gie 560
                  i+
  KKY18692.1 839 -IH 840
                 .65 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.1
      DHC_N1  155 ckkylnpeelfgqeveeaikklkeaielleawkeeyeektrekleespkekpw...efdeksiFarldafl....................eRlekl 228 
                  + + l  ++l++ +++++ ++l e ++l+ +  +e+ +k r++ ++s ++k++    +d +++ a+++a                      e ++  
  KKY18692.1 1086 VDQWLRFQSLWDLKADQLYDALGEDLTLWLQLLQEI-RKSRATFDTSDTKKTFaslTIDYEQVQAKVNAKYdqwqqeiiqkfgaklggniaETCN-- 1179
                  555555555665555566666666666666666666.3666555554433333211345555555555555222222222222222222222222.. PP

      DHC_N1  229 lelfetieqfsklekvggtkgkelegqieeileefeeaveklksksydvLdvsaee....feadfkeFkerikdlerrlqai 306 
                                         +++   e++++  ea ++ + +s+  L ++ ++    +e +++ F+  +  l r+  ++
  KKY18692.1 1180 ----------------------DIKTARTELENQTLEASSTAQAVSFITLVQQCKQrakvWEPKVETFRHGTTTLSRQRYQF 1239
                  ......................222222333333333333333333333333222223334444444444444444444444 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.57
      DHC_N1  174 kklkeaielleawkeeyeektrekle..espkekpw..efdeksiFarldafleRlekllel.fetieqfsklekv..ggtkgkelegq....ieei 259 
                   + ++  +l++ w++ ++ k+ e+l+  ++ +++p   ef+e++  +  +  l+R++ l ++ +++++q+  le v  g+t +k+l        ++i
  KKY18692.1 1510 VNYQNKCRLIRGWDDLFT-KCSENLNslQAMRHSPYyrEFEEEA--SSWEDKLNRVHVLFDVwIDVQRQWVYLEGVftGNTDIKHLLPTestrFQNI 1603
                  45677889999******5.***9*99652224444445898888..899************945888999999999998888999887778889999 PP

      DHC_N1  260 leefeeaveklksksydvLdv 280 
                  + ef  +++k+ + ++ vLdv
  KKY18692.1 1604 NSEFFAVMKKVYKSPF-VLDV 1623
                  9999999999986665.6663 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.35
      DHC_N1  223 eRlekllelfetieqf.........sklekvggtkgkelegq..............ieeileefeeaveklksksydvLd.vsaee..feadfkeFk 293 
                  +R+  l+e ++++e+                 ++++ +le++               + i  e+ ++ +k+  +s+++Ld +s+e+  +e+  k+F+
  KKY18692.1 3401 DRVGPLREEVDQLEEQalqtkaeakA-----IENTIAKLEQSietykaeyavligeTQAITSEMSTVESKVD-RSVKLLDsLSQERgrWEEGSKSFE 3491
                  44444444444433333332222220.....22344444444444444444444445555555555555554.888888876666688999999999 PP

      DHC_N1  294 erikd 298 
                  ++i  
  KKY18692.1 3492 TQIGT 3496
                  99865 PP

>> DHC_N2  Dynein heavy chain, N-terminal region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   1.2       4.2   2.1e+03      61     104 ..     431     487 ..     344     520 .. 0.66
   2 ?   -2.6   0.7       4.4   2.2e+03       7      69 ..    1110    1182 ..    1104    1227 .. 0.53
   3 !  397.0   2.4    2e-121  9.9e-119       2     397 .]    1350    1751 ..    1349    1751 .. 0.97
   4 ?   -1.8   1.3       2.6   1.3e+03      86     184 ..    3160    3260 ..    3118    3295 .. 0.69
   5 ?   -1.0   0.2       1.4   7.2e+02     113     164 ..    3393    3442 ..    3362    3494 .. 0.47

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.2
                 X........XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXX.. CS
      DHC_N2  61 e........wevakelkekieefkevlplieelrnpal.....rerHwkelsellgv 104
                 e        ++++++ +++++ef +v + ++  rn+++     ++rH k +++l  +
  KKY18692.1 431 EfsalmknaNQIWRTWDDNLKEFTNVARDVTRKRNEKFipikvQPRHTKTMERLKYI 487
                 133333334777777777777777777777777777776666667777777765432 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.4
                  XXXXXXXXXXXXXXXXXXXXXX......XXX..XXXXXXXXX....XXXXXXX.XXXXXXXXX..XXXXXXXX CS
      DHC_N2    7 elellkklwdlvsewqekleew.kktpfkel..dveeleeev....kellkkl.kklpkalke..wevakelk 69  
                  +l+l  +l + +++ ++++++  +k++f++l  d e+++ +v    +++++++ +k+  +l     e+++++k
  KKY18692.1 1110 DLTLWLQLLQEIRKSRATFDTSdTKKTFASLtiDYEQVQAKVnakyDQWQQEIiQKFGAKLGGniAETCNDIK 1182
                  5555555666666666666653233455554457777777775544566655423333332223323333332 PP

  == domain 3  score: 397.0 bits;  conditional E-value: 2e-121
                  XXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DHC_N2    2 eeikkelellkklwdlvsewqekleewkktpfkeldveeleeevkellkklkklpkalkewevakelkekieefkevlplieelrnpalrerHwkel 98  
                  e+i +e+++++ +w  +s ++++++e  +  ++++++++l++ +++llk+ + +p +++++ +++++++ ++++++v p++++l+ +a+rerHw ++
  KKY18692.1 1350 ENILEEIRDFQLVWANLSGVWQSINELREALWNSIQPRKLRQSLDALLKNTRDMPSRMRQYAAFEHVQTILRQLLKVNPILSDLKGEAVRERHWVKI 1446
                  7899********************************************************************************************* PP

                  XXXX..XXXXXXXX.XXXXXXXXXXXX..XXXXXXXXXXXXX-HHHHHHHHHHHHHHTS---EEEE-SSS.TEEE..THHHHHHHHHHHHHHHHTCS CS
      DHC_N2   99 sellgvikdpdseesltlgdllelgll..eeeieeisekAtkEaslekalkkieeewkelefelteykdsgvfilkgvdeiielledhivklqsmks 193 
                  ++ l+ +k+++++ s+tlgd+++l+l+  e+ +++++ +A++E++le+ lk+++++w++++++l++y+++ +++++g+d++++++++++++lq+m+ 
  KKY18692.1 1447 FKALKPGKRYSPN-SMTLGDVWDLQLVttESTVRDVIVQAQGELALEEFLKQVRDTWTNYSLDLVNYQNK-CRLIRGWDDLFTKCSENLNSLQAMRH 1541
                  ****756656666.7***********446999***********************************988.************************** PP

                  SSTT..THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.TH.HHHHHTHHHHHHHHHHHHHHHHHHHHHHTTSGGGG...STTHHHHHHHHHH CS
      DHC_N2  194 spyvkpfeeeveewekklsrlqeildewlkvQrkWlyLepifsse.dirkqlpeeakrFksvdkewkkimkevskdpnvleatskpgllekleelne 289 
                  spy+++feee+++we+kl+r++ ++d+w++vQr+W+yLe++f+++ di++ lp e++rF+++++e+  +mk+v+k+p vl++ ++p+++++le+l +
  KKY18692.1 1542 SPYYREFEEEASSWEDKLNRVHVLFDVWIDVQRQWVYLEGVFTGNtDIKHLLPTESTRFQNINSEFFAVMKKVYKSPFVLDVLAIPEVQKSLERLAD 1638
                  ****88**************************************66************************************99************* PP

                  HHHHHHHHHHHHHHHHHHHSTTHHHH-HHHHHHHHHTTTTSGGGHHHHHHHHSSEEEESE.....EEEEEETTS-EEEEE.......E.EEEHHHHH CS
      DHC_N2  290 qlekiqksLneyLekkRlafpRFyFlsddeLleilsqskdpsavqphlkkcFegiaslefeekkeitgmiskegEkvelse.....argnveeWLne 381 
                  +l +iqk+L eyLek+R +fpRFyF++d++Llei+++s+d  +v +h+kk+F gi+ +  +++ +i+g+ s+egE+++l++      + ++ eWL +
  KKY18692.1 1639 LLSRIQKALGEYLEKERVSFPRFYFVGDEDLLEIIGNSNDTGRVAKHFKKMFAGISGVVTDDDGSIIGITSREGEELRLRRevsliKTPKINEWLAA 1735
                  *******************************************************************************98999976669******* PP

                  HHHHHHHHHHHHHHHH CS
      DHC_N2  382 leeemkktlkellkea 397 
                  le++m++tl ell+ea
  KKY18692.1 1736 LENSMRSTLAELLAEA 1751
                  ***********99875 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 2.6
                  XXXXXXXXXXXXXXXXX...X..XXXXXXX.XXXXXXXXXXX..X...XXXXXXX.XXXXXX-HHHHHHHHHHHHHHTS---EEEE-SSS.TEEE.. CS
      DHC_N2   86 rnpalrerHwkelsellgv.i..kdpdseesltlgdllelgl..l...eeeieei.sekAtkEaslekalkkieeewkelefelteykdsgvfilkg 173 
                  r+ +l++rH  + +++  + +  k    e+    +  l++gl  l    ++++++ ++ A+k  +lek+ ++ +e+ +++ ++  e ++++      
  KKY18692.1 3160 RSTSLTPRHYLDFMAQYVKlFtqK---REDLEEQQRHLNVGLdkLrdtVDKVRDLrASLAQKKTQLEKKNAEANEKLQHMVIDQREAESRKAAS--- 3250
                  667788888888877764443222...2222234556666666523347777777345699999999999999999999988888877664322... PP

                  THHHHHHHHHH CS
      DHC_N2  174 vdeiielledh 184 
                    ei+++le +
  KKY18692.1 3251 -LEIQTALEKQ 3260
                  .2666666655 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 1.4
                  .XXXXXXXXXXX.XXXXXXXXXXXXXX-HHHHHHHHHHHHHHTS---EEEE-S CS
      DHC_N2  113 sltlgdllelgl.leeeieeisekAtkEaslekalkkieeewkelefelteyk 164 
                  +++++++l+    l+ee+ ++ e+A +    + + k+ie++ ++le ++++yk
  KKY18692.1 3393 QVNYSEILDRVGpLREEVDQLEEQALQ---TKAEAKAIENTIAKLEQSIETYK 3442
                  344444444411233333333333321...22222223333333333333333 PP

>> AAA_9  ATP-binding dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       6.3   3.2e+03      53      86 ..    1728    1759 ..    1711    1762 .. 0.76
   2 ?    0.0   0.0      0.76   3.8e+02      24      52 ..    3028    3058 ..    3018    3067 .. 0.75
   3 ?   -1.6   0.4       2.4   1.2e+03     157     184 ..    3208    3235 ..    3180    3239 .. 0.85
   4 ?   -2.1   1.3       3.4   1.7e+03     157     213 ..    3238    3295 ..    3230    3299 .. 0.68
   5 !  250.4   0.3   2.1e-77     1e-74       2     220 .]    3555    3774 ..    3554    3774 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6.3
                  STTSTTHHHHHHHHHHTTSEEEESTT.SSHHSTT CS
       AAA_9   53 klsdkkflktLenairfGkplliedvgeeldpiL 86  
                  k+  +++l  Len++r   + l+ ++ e+++pi+
  KKY18692.1 1728 KI--NEWLAALENSMRSTLAELLAEAVEKFEPIF 1759
                  33..359999******999888888779999987 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.76
                  ...SSEEEEESSSTTHHHHHHH......HEE CS
       AAA_9   24 s..erwPlliDPqgqankwiknkekeklkvi 52  
                  +  +r  ll+D q++  kw  ++  ++l+v+
  KKY18692.1 3028 EgaQRQGLLLDSQEELYKWFTQQIVKNLHVV 3058
                  1459999**************9966666654 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.4
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       AAA_9  157 vkkerpeleekkeeliqeeaenkkqlke 184 
                  v+  r +l +kk++l +++ae +++l++
  KKY18692.1 3208 VRDLRASLAQKKTQLEKKNAEANEKLQH 3235
                  5666889999999999999999999986 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 3.4
                  HHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSSTHHHHHHHHHHH CS
       AAA_9  157 vkkerpelee.kkeeliqeeaenkkqlkeledklLeeLseaegniLedeelietLeks 213 
                  + + + e  +    e+ +  +++++++++  d +L+ L++ae  ++e ++ +++++k 
  KKY18692.1 3238 IDQREAESRKaASLEIQTALEKQEREVATRRDVVLNDLAKAEPAVIEAQKSVSNIKKQ 3295
                  44333333330333455566777788889999***************99999888765 PP

  == domain 5  score: 250.4 bits;  conditional E-value: 2.1e-77
                  HHH.HT--STHHHHHHHHHHH..SSEEEEESSSTTHHHHHHH.......HEESTTSTTHHHHHHHHHHTTSEEEESTT.SSHHSTTHHHHTTCCEE. CS
       AAA_9    2 eWnlqgLPsDelsieNaiivtkserwPlliDPqgqankwiknk.ekeklkviklsdkkflktLenairfGkplliedvgeeldpiLepvLekeiikk 97  
                  eW+ +gLP D+l++eNaii+++ +r+Pl+iDP+g+ +++++++ +++kl+++++ d++f+k+Le+a+rfG+p+li+d+ e+ldpiL++vL+ke++k+
  KKY18692.1 3555 EWQRHGLPVDDLCTENAIILQRFNRYPLIIDPSGRTTEFLQKEnQERKLTITSFLDDSFVKQLESALRFGNPILIQDA-EHLDPILNHVLNKEYQKT 3650
                  8********************99******************9978889******************************.*****************8 PP

                  ..CEEEESSSE.EE--SSCEEEEEESSTTSHHHHHHHHHSEEEE---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       AAA_9   98 g.rkliklgdkeieysenFrLylttklsnphyspeiaakvtlinFtvteeGLedqlLaevvkkerpeleekkeeliqeeaenkkqlkeledklLeeL 193 
                  g r li+lg++ei++s+ F+Lyl t++++ +++p+i++++t++nFtvt+++L+ q L+ev+k erp+++e++++li+ + e++ +l++le klL+ L
  KKY18692.1 3651 GgRVLIQLGKQEIDFSPAFKLYLSTRDPSAAFPPDICSRTTFVNFTVTRSSLQTQSLNEVLKCERPDVDERRTNLIKMQGEFNTNLRTLERKLLQAL 3747
                  55*********************************************************************************************** PP

                  HHSSSSSSTHHHHHHHHHHHHHHHHHH CS
       AAA_9  194 seaegniLedeelietLeksKktaeei 220 
                  +e++gniL+d+++i tLe+ Kk+a++i
  KKY18692.1 3748 NESRGNILDDDHVIGTLETLKKEAADI 3774
                  ************************987 PP

>> AAA_8  P-loop containing dynein motor region D4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.5   0.0   4.8e-68   2.4e-65       2     260 .]    2901    3179 ..    2900    3179 .. 0.93

  Alignments for each domain:
  == domain 1  score: 220.5 bits;  conditional E-value: 4.8e-68
       AAA_8    2 dLvlfedaiehlarilRvlrqprghaLlvGvgGsGrqsltkLAafiaelelfqievtkkykekefredlkkllkkagikqkevvfllsdnqiieesf 98  
                   Lvlf+d++eh +ri Rv rqp+gh++l+Gv GsG+ +l++  a +++l++fqi+v+ ky+ ++f+edl+ +lk +g+k+++++f+++++++++  f
  KKY18692.1 2901 PLVLFNDVLEHALRIDRVFRQPQGHLILIGVSGSGKTTLSRFVAWMNGLKVFQIKVHGKYSGDDFDEDLRGVLKACGCKGEKICFIMDESNVLDSGF 2997
                  69*********************************************************************************************** PP

       AAA_8   99 ledinnlLntGevpnLfskeekeeiieelrkeakkq.gvedskesllnffikrvrenLhivlcmspvgeafrsrlrkfpsLvncttidwfqeWPeea 194 
                  le +n+lL++Gevp Lf+ +e+  +++++++ a++q    ds+e+l++ f++++ +nLh+v++m+p  + + s++ + p+L n ++++w+  W ++a
  KKY18692.1 2998 LERMNTLLANGEVPGLFEGDEYTTLMTACKEGAQRQgLLLDSQEELYKWFTQQIVKNLHVVFTMNPPQDGLGSKAATSPALFNRCVLNWMGDWSDQA 3094
                  **********************************99446789******************************************************* PP

       AAA_8  195 LleVaekvlee...................eeeieeelkesivkvlvevhssveelsekfleelkrkiyvtpksylellktykkl 260 
                  + +V+ ++ ++                     +++ ++++++v+++v++h s ++ ++k+ ++  r++ +tp++yl+++ +y kl
  KKY18692.1 3095 FYQVGYELTQSidldkadftapdsipiayrGLSLPVSHRDAVVNAMVYIHDSLHRFNHKLEKQQGRSTSLTPRHYLDFMAQYVKL 3179
                  ******9995544444444444445555556777888888******************************************987 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.64   3.2e+02      14      53 ..    1905    1944 ..    1899    1956 .. 0.74
   2 ?   -2.4   0.0       5.8   2.9e+03     147     181 .]    2029    2063 ..    2024    2063 .. 0.89
   3 !   13.1   0.0    0.0001      0.05       8      59 ..    2194    2245 ..    2187    2288 .. 0.80
   4 !  125.7   0.0   2.7e-39   1.4e-36      10     179 ..    2558    2730 ..    2551    2732 .. 0.92
   5 ?    0.7   0.0      0.67   3.3e+02      33      51 ..    2923    2941 ..    2902    2956 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.64
       AAA_7   14 VptvdtvrysyllelllknkkpvllvGptGtGKtviikdl 53  
                  V t  t r+   l++ l ++     +Gp+GtGKt  +k l
  KKY18692.1 1905 VRTPLTDRCFLTLTQALCQRLGGSPYGPAGTGKTESVKAL 1944
                  66666666666677777777777779********999876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.8
       AAA_7  147 kdvqlvaamgppgggrneitpRllrhfnvlaitep 181 
                  +++ +   m+p   gr++++  l++ f  +a+++p
  KKY18692.1 2029 QNTGIFITMNPGYAGRSNLPDNLKKLFRSVAMSKP 2063
                  7888999*********************9999876 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 0.0001
       AAA_7    8 kfseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldk 59  
                    ++ lVpt   ++  + l ++ + ++ v++vG +GtGK+ i + ll++l+ 
  KKY18692.1 2194 AQDRHLVPTDLWISKAIQLYQIQQIHHGVMMVGGSGTGKSEIWHVLLQALQA 2245
                  556789999999999999999***********************99999984 PP

  == domain 4  score: 125.7 bits;  conditional E-value: 2.7e-39
       AAA_7   10 seilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekrrk...gvygPp.ggkkl 102 
                  +++++pt dtvr + +l   l++++p++l+Gp G+GKt+++ + l+kl+  ++ ++ +nfs+ t++  l +++e++ e ++     v+ P   gk l
  KKY18692.1 2558 TDVIIPTLDTVRHEEVLYSWLAEHRPLMLCGPPGSGKTMTLFSALRKLP--NMEVVGLNFSSATTPDLLVKTFEQYCEYKKTlngVVLSPTqLGKWL 2652
                  689**********************************************..9*************************9887434256777646999* PP

       AAA_7  103 vvFvDDlnmpakekygaqppiellRqlldyggwYdrkklefkeikdvqlvaamgppg.ggrneitpRllrhfnvlait 179 
                  v+F D++n+pa++ yg+q +i +lRql++++g++ +++  + ++  +q+v+a++pp   gr+++ pR+lrh  ++ ++
  KKY18692.1 2653 VIFCDEINLPAPDIYGTQRAISFLRQLIEHNGFWRTTDKAWVTLDRIQFVGACNPPTdVGRHPLGPRFLRHAPLIMVD 2730
                  ******************************************************986369***********9888765 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.67
       AAA_7   33 kkpvllvGptGtGKtviik 51  
                  + +++l+G +G+GKt++ +
  KKY18692.1 2923 QGHLILIGVSGSGKTTLSR 2941
                  66899**********9865 PP

>> MT  Microtubule-binding stalk of dynein motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       1.3   6.3e+02      77     112 ..     904     939 ..     891     945 .. 0.87
   2 ?   -1.5   0.9       1.9   9.6e+02     234     311 ..    1157    1233 ..    1142    1235 .. 0.79
   3 !  140.5   6.9   1.3e-43   6.5e-41       3     339 ..    3194    3526 ..    3192    3530 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.3
          MT  77 qkdceedlakaepallaaqealntlnktnltelksf 112
                  k+c  d a     l + q a++ ln +n+ +l s+
  KKY18692.1 904 LKSCPYDAAAFAEQLNTIQSAVDKLNLENFVNLESW 939
                 58999999999999******************9997 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.9
          MT  234 qeklaaikakiaelnanlaeltaafekatadklkcqqeaeatartislanrlvgglasenvrwaeavenfksqektlc 311 
                  q +  +i++  a+l  n+ae    ++ a ++      ea +ta+++s+   lv         w   ve f++   tl+
  KKY18692.1 1157 QWQQEIIQKFGAKLGGNIAETCNDIKTARTELENQTLEASSTAQAVSFI-TLVQQCKQRAKVWEPKVETFRHGTTTLS 1233
                  4444567777899*******99999999998888888*********997.5888888888889999***999998885 PP

  == domain 3  score: 140.5 bits;  conditional E-value: 1.3e-43
          MT    3 lengllklqstaaqvddlkaklaaqevelkqknedadkliqvvgvetekvskekaiadeeekkvavinkevkkkqkdceedlakaepallaaqealn 99  
                  l+ gl kl+ t ++v dl+a la ++++l++kn +a++ +q + ++       ka + e ++ ++  ++ev+ ++    +dlakaepa++ aq+++ 
  KKY18692.1 3194 LNVGLDKLRDTVDKVRDLRASLAQKKTQLEKKNAEANEKLQHMVIDQREAESRKAASLEIQTALEKQEREVATRRDVVLNDLAKAEPAVIEAQKSVS 3290
                  788********************************************999999**999999************************************ PP

          MT  100 tlnktnltelksfgsppdavvnvaaavmvllaprgkvpkdrswkaakivmakvdafldslinfdken..ihenclkaikeylndpefepefiksksl 194 
                   ++k+ lte++s+  pp+ v     +v  ll       k  swk+ + ++   d f+ s++n+d e+   ++  +k  +eyl++ +f  e ++  s 
  KKY18692.1 3291 NIKKQHLTEVRSMSNPPPGVKLAMESVCTLLGF-----KVDSWKTIQGIIR-RDDFIASIVNYDNEKkmTPNLRIKMRNEYLSNDDFTYERVNRASK 3381
                  ********************9999999999864.....557****998876.588********99872134445678889***************** PP

          MT  195 aaaglcswvinivrfyevycdvepkrqalekanaelaaaqeklaaikakiaelnanlaeltaafekatadklkcqqeaeatartislanrlvgglas 291 
                  a++ l  wv   v++ e+   v p r  +++ +++  +++    ai + ia+l++ +    a++     +      e  + +  +  + +l+  l+ 
  KKY18692.1 3382 ACGPLVQWVEAQVNYSEILDRVGPLREEVDQLEEQALQTKAEAKAIENTIAKLEQSIETYKAEYAVLIGETQAITSEMSTVESKVDRSVKLLDSLSQ 3478
                  ********************************999999999999***************************************************** PP

          MT  292 envrwaeavenfksqektlcgdvllitafvsyvgfftkkyrqelldrl 339 
                  e  rw e  + f +q  tl gd+l+ +af++y g++ +++r+ ++d  
  KKY18692.1 3479 ERGRWEEGSKSFETQIGTLIGDILIASAFLAYAGLYDQQFRKAMIDEW 3526
                  ******************************************999864 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00089      0.44      63     138 .]    1974    2055 ..    1930    2055 .. 0.85
   2 !   45.4   0.0   1.5e-14   7.5e-12       1     131 [.    2221    2354 ..    2221    2361 .. 0.87
   3 !   25.7   0.0   1.9e-08   9.4e-06       2     136 ..    2584    2722 ..    2583    2723 .. 0.85
   4 !   21.2   0.0   4.5e-07   0.00022       1     137 [.    2925    3081 ..    2925    3082 .. 0.84
   5 ?   -0.2   0.0       1.8     9e+02      65     103 ..    3266    3304 ..    3225    3323 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00089
                  --G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---.............-EEEEEESS--.-TT-TTHHHHTT- CS
       AAA_5   63 aregeilvlDEveraesevlnsLlslleerrllleeggelvkaknddller.......frviatanpldrslnelspalrsRf 138 
                  ++ g+  ++DE++r+e ++l+++ + + + ++ l +g    k + + l+ r       + ++ t+np + ++++l  +l+++f
  KKY18692.1 1974 CQVGAWGCFDEFNRLEEKILSAVSQQIQNIQIGLRKGSDDAKTQIE-LIGRhfkvnqnTGIFITMNPGYAGRSNLPDNLKKLF 2055
                  5678899**************************9999988877765.44446889999****************9***99988 PP

  == domain 2  score: 45.4 bits;  conditional E-value: 1.5e-14
                  EEEEE--SSSSHHHHHHHGGGGB....S--EEEEE--TT--HHHHH--B--.........--------............G-SEEEEESGGG--HHH CS
       AAA_5    1 dvlLvGppGtgKselaerlaaal....nreveyvqltrdtteedlkgrreikngttslvdsplvraar............egeilvlDEveraesev 81  
                  +v++vG +GtgKse++  l++al    n e +y  + ++  +++ ++++  ++ t++++d+ ++   r            + +i+++++v+   +e+
  KKY18692.1 2221 GVMMVGGSGTGKSEIWHVLLQALqavdNIEGVYHVIDSKVMSKEALYGYL-DSTTREWTDGLFTGILRkivdnlrgedtkRHWIVFDGDVD---PEW 2313
                  599********************999988888888877655555555555.48***********9999***********99**********...*** PP

                  HHHHHHHHHSSEEE..-SSSEEE---......-EEEEEESS--.-TT-TT CS
       AAA_5   82 lnsLlslleerrllleeggelvkaknddllerfrviatanpldrslnels 131 
                  ++ L+s+l++++ll+ ++ge+ + +++     +r++++ ++l+     ++
  KKY18692.1 2314 VENLNSVLDDNKLLTLPNGERLGLPPN-----VRIMFEVENLK----YAT 2354
                  **************************9.....9**99999887....444 PP

  == domain 3  score: 25.7 bits;  conditional E-value: 1.9e-08
                  EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE CS
       AAA_5    2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrll 95  
                  ++L GppG+gK++   + ++ l n ev+  ++++ tt++ l+   e   + ++  ++++    +  +  +++ DE++   +++ ++   +   r+l 
  KKY18692.1 2584 LMLCGPPGSGKTMTLFSALRKLpNMEVVGLNFSSATTPDLLVKTFEQYCEYKKTLNGVVLSPTQlgKWLVIFCDEINLPAPDIYGTQRAISFLRQLI 2680
                  89************999999999***********************765666666666666666556668899*****99******99999999999 PP

                  ..-SSSEEE---......-EEEEEESS--..-TT-TTHHHHT CS
       AAA_5   96 leeggelvkaknddllerfrviatanpld.rslnelspalrs 136 
                    +g++++  k+   l r+++++++np+   ++++l p++++
  KKY18692.1 2681 EHNGFWRTTDKAWVTLDRIQFVGACNPPTdVGRHPLGPRFLR 2722
                  999999998887547777*********998999988888765 PP

  == domain 4  score: 21.2 bits;  conditional E-value: 4.5e-07
                  EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------...G-SEEEEESGGG--HHHHHHHHHHHHSSEE CS
       AAA_5    1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar...egeilvlDEveraesevlnsLlslleerrl 94  
                  +++L+G +G+gK++l++ +a + + +v+ +  + +++ +d+   ++          ++l+ a+    e+  +++DE + ++s  l+++++ll + ++
  KKY18692.1 2925 HLILIGVSGSGKTTLSRFVAWMNGLKVFQIKVHGKYSGDDFDEDLR----------GVLK-ACGckgEKICFIMDESNVLDSGFLERMNTLLANGEV 3010
                  79********************************************..........8999.6666655556667**********************9 PP

                  E......-SSSEEE---...................................-EEEEEESS--....-TT-TTHHHHTT CS
       AAA_5   95 l....leeggelvkaknddller.............................frviatanpld...rslnelspalrsR 137 
                  +     +e ++l+         +                             ++v++t+np++   +s++  spal  R
  KKY18692.1 3011 PglfeGDEYTTLMT--------AckegaqrqgllldsqeelykwftqqivknLHVVFTMNPPQdglGSKAATSPALFNR 3081
                  81111233333333........3334566678*******************************9998888999999888 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 1.8
                  G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEE CS
       AAA_5   65 egeilvlDEveraesevlnsLlslleerrllleeggelv 103 
                  + + +vl+++ +ae++v+++  s+ + ++ +l e +   
  KKY18692.1 3266 TRRDVVLNDLAKAEPAVIEAQKSVSNIKKQHLTEVRSMS 3304
                  555689*****************9999999988777655 PP

>> AAA_lid_11  Dynein heavy chain AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.0   1.7e-29   8.5e-27       1     164 []    4111    4284 ..    4111    4284 .. 0.87

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 1.7e-29
                  HHHHHHHHCT.-HHHHT..........HHHHHHHHHHHHHHHHHGGGGTT.TS-SS-----HHHHHHHHHHHHHHHHHCSS.......GGS-HHHHH CS
  AAA_lid_11    1 kanllraysn.esekideeffeekeeefkkllfsLcffHavvqeRrkFgp.lGwnipYeFnesdleisvevlkmyldeyee.......kevpwealk 88  
                  +an+++++s  +s+        ++  e  +l+  Lcf+HavvqeR ++ p lGw   +eFn+sd+e++  +l+++++ +++        ++pw+ ++
  KKY18692.1 4111 RANMKDSLSVlRSR-AA-----KEPVEKGRLYLLLCFLHAVVQERLRYAPaLGWKGFWEFNDSDYECCAFILDTWVEAVSQgrsnippLKLPWDLIR 4201
                  67888888553222.22.....2456678999****************9758************************999999*****99******** PP

                  HHHHHTTTSTT--SHHHHHHHHHHHHHHSSGGGGSTT......-....T...E---SSHHHHHHHHCTS-SS--CCCCTS-TTH CS
  AAA_lid_11   89 yligeinYGGrvtDdwDrrllktyleeffseevleeeyk....s....geykipeeksleeyleyieslpladspevfglhena 164 
                   li+e +YGG++ ++ D + l+++++++f++  +e+++k    s    ++  +p  +++++++e++++lp+ ++p+ +gl +na
  KKY18692.1 4202 NLITE-MYGGKIDNEGDFKKLSALVTDIFTPVSYEDDHKlvdgSqqgvEDLIVPGGTKIQDFTEWVNQLPEREPPAYLGLPSNA 4284
                  ***98.7***************************9996665442456556677999**************************98 PP

>> Dynein_AAA_lid  Dynein heavy chain AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   7.6e-18   3.8e-15       6     128 ..    2419    2542 ..    2414    2543 .. 0.95

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 7.6e-18
  Dynein_AAA_lid    6 e..klvepclefvrkkckeivpvtdlnlvqslcrllealldefeekeeesadeeleeeeleevleklflfalvWSiGatldedsrekfdeflr 96  
                      +  +++e++l+ + k+ ++i+++td ++++sl++ll++ ++++ e++ ++++  l++ ++e ++ k +l a+vW++ + +  ++r+ f +++ 
      KKY18692.1 2419 QdeNFLERALAAA-KRYNHIMEFTDSRVLTSLFSLLNKACRNVLEYNIQHSEFLLDNGQIEGYMSKKMLLAFVWALTGDCPLTDRKAFGDYVS 2510
                      4458999*****9.******************************************************************************* PP

  Dynein_AAA_lid   97 elleealklp..peegtvyDyffdketgkWkpWe 128 
                      +l +  ++lp   ++ ++ Dy     + +W+pW+
      KKY18692.1 2511 SLTT--IDLPllTDSASLIDYDATLPRAEWTPWQ 2542
                      ****..999999*********************8 PP

>> Dynein_heavy  Dynein heavy chain region D6 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       3.9     2e+03      67     114 ..     272     324 ..     264     328 .. 0.80
   2 ?    6.8   0.1     0.013       6.6      56      97 ..     926     968 ..     906     974 .. 0.83
   3 ?    5.7   0.0      0.03        15      15     107 ..    3585    3689 ..    3580    3697 .. 0.76
   4 !   14.7   0.0   4.9e-05     0.025       2      55 ..    4013    4067 ..    4012    4071 .. 0.90
   5 !   22.6   0.0   1.7e-07   8.5e-05      84     119 .]    4075    4110 ..    4068    4110 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 3.9
                   CCCHHHHHHH...........HHTT-EEEEEEES-TT.S-HHHHHTSEEEEE- CS
  Dynein_heavy  67 pswlkeLekileel....eeklhssfRlwltsepspk.fPislLqssikvtne 114
                     w+k++++i + +     e++ ++   wl++e + + + ++l   ++ +t+e
    KKY18692.1 272 NTWIKSIQSITKMSrdpeCESAAQEINFWLSMEDALEgIEQQLRSDGVALTME 324
                   58999999997754666656667899*******99888999999999998888 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.013
                   -EEEEE-GGG-CCCHHHHHHH........HHTT-EEEEEEES- CS
  Dynein_heavy  56 sWvlLqNchlapswlkeLekileel.eeklhssfRlwltseps 97 
                   + + L+N   + sw+++L++ +e++ +++++s++R w+++  +
    KKY18692.1 926 DKLNLENFVNLESWVTRLNSRIEDIlQQRMRSALRQWISTFHD 968
                   556799****************97779999********98665 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.03
                    -THHHHHHHHHHTT--EEEEETTSHHHHHHHHHHHHHHHHT-EEEEE-GGG-CCCHH.HHHHH..................HHTT-EEEE.EEES CS
  Dynein_heavy   15 dptesleklakklkklvksvslGqgqeeeaekalekaakegsWvlLqNchlapswlk.eLekileel...........eeklhssfRlwl.tsep 96  
                    dp+ + +++ +k ++  +++++ +  ++   k le+a + g+ +l+q+   +   l+  L+k  +++           e + +++f+l+l t +p
    KKY18692.1 3585 DPSGRTTEFLQKENQE-RKLTITSFLDDSFVKQLESALRFGNPILIQDAEHLDPILNhVLNKEYQKTggrvliqlgkqEIDFSPAFKLYLsTRDP 3678
                    6666777777766666.78888888888889999**************988877777356666554466666666765667788******77789 PP

                    -TTS-HHHHHT CS
  Dynein_heavy   97 spkfPislLqs 107 
                    s+ fP ++  +
    KKY18692.1 3679 SAAFPPDICSR 3689
                    999**998766 PP

  == domain 4  score: 14.7 bits;  conditional E-value: 4.9e-05
                    TTS-EEEEE-TT--THHHHHHHHHHTT--EEEEETTSHHHH.HHHHHHHHHHHHT CS
  Dynein_heavy    2 pttPvlfilspgadptesleklakklkklvksvslGqgqee.eaekalekaakeg 55  
                    ++tP+ +  +pg d++ ++++l ++++ ++ ++++G++++   a+ka+++aa  +
    KKY18692.1 4013 ARTPIALTSNPGFDASYKVDALVERMNATCANIAMGSNESLaAADKAISNAAAAE 4067
                    579***********************************7654999***9998765 PP

  == domain 5  score: 22.6 bits;  conditional E-value: 1.7e-07
                    HHTT-EEEEEEES-TTS-HHHHHTSEEEEE---SSH CS
  Dynein_heavy   84 lhssfRlwltsepspkfPislLqssikvtnepPkgl 119 
                     hs+fRl+l++e+spk+P++l++ s  ++ne+P g+
    KKY18692.1 4075 PHSDFRLFLSMETSPKIPVNLIRASRILMNEQPAGV 4110
                    599******************************985 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.013       6.6      11      47 ..    1930    1957 ..    1927    1980 .. 0.84
   2 ?    4.4   0.0     0.086        43      10      73 ..    2224    2297 ..    2220    2304 .. 0.83
   3 !   15.8   0.0   2.6e-05     0.013       6      60 ..    2582    2628 ..    2579    2639 .. 0.89
   4 !   13.6   0.0   0.00012     0.062       4      60 ..    2922    2969 ..    2919    3038 .. 0.79
   5 ?   -0.2   0.2       2.2   1.1e+03      33     117 ..    3716    3831 ..    3699    3841 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.013
      AAA_22   11 tGesGtGKTtllrrlleqldeeakaeeerpevvfvtl 47  
                  +G++GtGKT +++ l  ql         ++ ++ +++
  KKY18692.1 1930 YGPAGTGKTESVKALGLQL---------GRFTLVFCC 1957
                  6*****************9.........555555555 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.086
      AAA_22   10 vtGesGtGKTtllrrlleqldeeakaee.........erpevvfvtlpsst.sskdl.lrellralglelkaerl 73  
                   +G sGtGK+     ll+ l+++ ++e          +++e ++ +l s t +++d  ++ +lr++ ++l + ++
  KKY18692.1 2224 MVGGSGTGKSEIWHVLLQALQAVDNIEGvyhvidskvMSKEALYGYLDSTTrEWTDGlFTGILRKIVDNLRG-ED 2297
                  5899*******************99999**999999999999999999998877664488898888877776.44 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 2.6e-05
      AAA_22    6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrel 60  
                  + l+++G++G+GKT++l   l++l+        + evv  + +s t+++ l + +
  KKY18692.1 2582 RPLMLCGPPGSGKTMTLFSALRKLP--------NMEVVGLNFSSATTPDLLVKTF 2628
                  5689********************8........9***********9999887665 PP

  == domain 4  score: 13.6 bits;  conditional E-value: 0.00012
      AAA_22    4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrel 60  
                   +g+l+++G sG+GKTtl r ++  +         + +v+ +++ ++ s +d+ ++l
  KKY18692.1 2922 PQGHLILIGVSGSGKTTLSRFVAWMN---------GLKVFQIKVHGKYSGDDFDEDL 2969
                  79****************99988776.........5555555555555555554444 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 2.2
      AAA_22   33 akaeeerpevvfvtlpsstsskdllrellralglelka.......................erlsseellealeqalrarav......ielliiDEa 100 
                  ++ +e+r  +++++    t++++l r+ll+al++++ +                       + ++++ +++ +e   ++++         + i++  
  KKY18692.1 3716 PDVDERRTNLIKMQGEFNTNLRTLERKLLQALNESRGNildddhvigtletlkkeaadisrKIAETDGVMTEVESITQEYSIiaeacsAIFAILEQL 3812
                  4444477777788888888888888888888888887788888877777777777766666444444444444444444444555555578888888 PP

      AAA_22  101 qhlrs..eealeeLrslln 117 
                  +hl++  +  l+++++++n
  KKY18692.1 3813 HHLNHfyQFSLQYFVDIFN 3831
                  8886356888888888887 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.016       8.2       4      29 ..    1930    1955 ..    1929    2003 .. 0.84
   2 ?    0.7   0.0       1.4   6.7e+02       1      23 [.    2222    2244 ..    2222    2285 .. 0.80
   3 !   17.1   0.0   1.2e-05    0.0058       1      90 [.    2584    2677 ..    2584    2723 .. 0.59
   4 !   15.7   0.0     3e-05     0.015       1      67 [.    2926    2990 ..    2926    3007 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.016
                  ESSTTSSHHHHHHHHHHHHTHEEEEE CS
         AAA    4 yGppGtGKTllakavakelgveflei 29  
                  yGp GtGKT  +ka+  +lg+  l +
  KKY18692.1 1930 YGPAGTGKTESVKALGLQLGRFTLVF 1955
                  9**************99988655554 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 1.4
                  EEEESSTTSSHHHHHHHHHHHHT CS
         AAA    1 vllyGppGtGKTllakavakelg 23  
                  v+++G  GtGK+ + + + + l+
  KKY18692.1 2222 VMMVGGSGTGKSEIWHVLLQALQ 2244
                  6899*************999986 PP

  == domain 3  score: 17.1 bits;  conditional E-value: 1.2e-05
                  EEEESSTTSSHHHHHHHHHHHH.THEEEEEETTTCSSS........STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA    1 vllyGppGtGKTllakavakel.gvefleisgsellsk........yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnq 88  
                  ++l+GppG GKT++  +  ++l ++e++ ++ s+ +             e +k +++++ +  +  k  ++f DEi   a++        ++r+++ 
  KKY18692.1 2584 LMLCGPPGSGKTMTLFSALRKLpNMEVVGLNFSSATTPdllvktfeQYCEYKKTLNGVVLSPTQLGKWLVIFCDEINLPAPDI-----YGTQRAISF 2675
                  589************99999986566666666666611222224443344455555555443444355********9888877.....223333333 PP

                  HH CS
         AAA   89 Ll 90  
                  L 
  KKY18692.1 2676 LR 2677
                  33 PP

  == domain 4  score: 15.7 bits;  conditional E-value: 3e-05
                  EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETG CS
         AAA    1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEi 67  
                  ++l+G  G GKT+l + va   g ++++i+++        +  +++r+++k++  k ++ ++++DE 
  KKY18692.1 2926 LILIGVSGSGKTTLSRFVAWMNGLKVFQIKVHGKY--SGDDFDEDLRGVLKACGCKGEKICFIMDES 2990
                  589****************************9999..6689999******99866665699999994 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0         3   1.5e+03       6      25 ..    1931    1951 ..    1930    1966 .. 0.83
   2 !   11.1   0.0   0.00067      0.34       2      52 ..    2222    2281 ..    2222    2307 .. 0.81
   3 !   11.4   0.0   0.00054      0.27       2      30 ..    2584    2613 ..    2584    2647 .. 0.84
   4 !   10.6   0.1   0.00094      0.47       3      20 ..    2927    2944 ..    2926    2956 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 3
      AAA_33    6 GlpGsGKstlaerllkklg.a 25  
                  G++G+GK+  ++ l  +lg +
  KKY18692.1 1931 GPAGTGKTESVKALGLQLGrF 1951
                  9*******9999997777753 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00067
      AAA_33    2 vllvGlpGsGKstlaerllkklg........avllssdtlrr.rlfgtdqqsktdytrvl 52  
                  v++vG +G+GKs   + ll++l+        + +++s ++++ +l+g  + +++++t+ l
  KKY18692.1 2222 VMMVGGSGTGKSEIWHVLLQALQavdniegvYHVIDSKVMSKeALYGYLDSTTREWTDGL 2281
                  89*********************9999999999999999999899987776666655543 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.00054
      AAA_33    2 vllvGlpGsGKstlaerllkklg.avllss 30  
                  ++l+G+pGsGK+  + + l+kl+ ++++  
  KKY18692.1 2584 LMLCGPPGSGKTMTLFSALRKLPnMEVVGL 2613
                  599*******************99888865 PP

  == domain 4  score: 10.6 bits;  conditional E-value: 0.00094
      AAA_33    3 llvGlpGsGKstlaerll 20  
                  +l+G++GsGK+tl++ ++
  KKY18692.1 2927 ILIGVSGSGKTTLSRFVA 2944
                  89************9886 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.14        67      13      50 ..    1918    1950 ..    1915    2058 .. 0.76
   2 ?    2.3   0.0      0.38   1.9e+02      26      52 ..    2221    2257 ..    2211    2313 .. 0.63
   3 ?    6.8   0.0     0.017       8.3      25     142 ..    2582    2697 ..    2569    2710 .. 0.65
   4 !    9.4   0.0    0.0026       1.3      15      42 ..    2912    2941 ..    2907    2945 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.14
      AAA_16   13 lsalervrsgrpelvllsGesGvGKsslvrellralek 50  
                  ++al++   g+p     +G++G+GK+  v++l  +l +
  KKY18692.1 1918 TQALCQRLGGSP-----YGPAGTGKTESVKALGLQLGR 1950
                  566666666666.....9***********998765554 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.38
      AAA_16   26 lvllsGesGvGKsslvrellralekd..........g 52  
                   v+ +G sG+GKs +   ll+al++           +
  KKY18692.1 2221 GVMMVGGSGTGKSEIWHVLLQALQAVdniegvyhviD 2257
                  68889**********9999976655466654333331 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.017
      AAA_16   25 elvllsGesGvGKsslvrellralekd...ggiflrgkcdqlesaipysalaqalareellrqllde....aesaeleawrekleeala.avpelag 113 
                  + ++l G++G+GK+  + ++lr l      g  f ++++ +l        l++++ + ++++  ++     ++ ++l+ w   ++++++ ++p++ g
  KKY18692.1 2582 RPLMLCGPPGSGKTMTLFSALRKLPNMevvGLNFSSATTPDL--------LVKTF-E-QYCEYKKTLngvvLSPTQLGKWLVIFCDEINlPAPDIYG 2668
                  56899************7777777776333333466666666........77777.3.666666666666655567777777777777765555555 PP

      AAA_16  114 aea.srllellkrllallsrderplvlvlD 142 
                   ++  ++l++l ++  + +++++   ++lD
  KKY18692.1 2669 TQRaISFLRQLIEHNGFWRTTDK-AWVTLD 2697
                  55555555555555555555455.555555 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.0026
      AAA_16   15 ale..rvrsgrpelvllsGesGvGKsslvr 42  
                  al+  rv ++  + ++l+G sG+GK++l r
  KKY18692.1 2912 ALRidRVFRQPQGHLILIGVSGSGKTTLSR 2941
                  55554777665699*************976 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0       0.6     3e+02       5      66 ..    1931    2002 ..    1930    2021 .. 0.58
   2 ?    6.1   0.0     0.031        15       2      81 ..    2223    2307 ..    2222    2333 .. 0.86
   3 !   10.7   0.0    0.0012       0.6       2      47 ..    2585    2632 ..    2584    2651 .. 0.82
   4 !   12.4   0.0   0.00034      0.17       2      44 ..    2927    2967 ..    2926    3007 .. 0.82
   5 ?   -1.6   0.3       7.3   3.6e+03      58      98 ..    3216    3256 ..    3182    3273 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.6
      AAA_18    5 GtpGvGKttlakeLskrl.gf...........gvnlrdvakenglllevdpe..aldeskrldedkldklldalee 66  
                  G++G+GKt+  k+L   l  f            +  +       l +++  +   +de++rl+e+ l ++++++++
  KKY18692.1 1931 GPAGTGKTESVKALGLQLgRFtlvfccddtfdFQAMGR----IFLGICQVGAwgCFDEFNRLEEKILSAVSQQIQN 2002
                  9*************766633366555543221111111....1111222222445566666666666666666555 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.031
      AAA_18    2 lltGtpGvGKttlakeLskrl.gf.......gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidg 81  
                  +  G +G+GK+++ + L + l ++       +v+ ++v +++ l+ + d    + ++ l ++ l k++d+l++ +   ++ +++v+dg
  KKY18692.1 2223 MMVGGSGTGKSEIWHVLLQALqAVdniegvyHVIDSKVMSKEALYGYLDSTTREWTDGLFTGILRKIVDNLRGED---TKRHWIVFDG 2307
                  567889***********7777455889999999999999999999999999777789999999999999999975...6899999887 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.0012
      AAA_18    2 lltGtpGvGKt.tlakeLskrlgf...gvnlrdvakenglllevdpeald 47  
                  +l+G+pG+GKt tl  +L+k+ ++   g n ++  + + l+ +++++   
  KKY18692.1 2585 MLCGPPGSGKTmTLFSALRKLPNMevvGLNFSSATTPDLLVKTFEQY--C 2632
                  69********9788888877658899999999999999999999888..3 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 0.00034
      AAA_18    2 lltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe 44  
                  +l G++G+GKttl++ ++ ++  g ++ ++  ++ ++ ++++e
  KKY18692.1 2927 ILIGVSGSGKTTLSRFVAWMN--GLKVFQIKVHGKYSGDDFDE 2967
                  799****************99..88888888777777777777 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 7.3
      AAA_18   58 dklldaleenss.aleegknlvidghlaeleseaakdikkvv 98  
                  ++  ++le+ ++ a+e+ ++ vid++ ae +++a  +i+   
  KKY18692.1 3216 AQKKTQLEKKNAeANEKLQHMVIDQREAESRKAASLEIQ-TA 3256
                  334445555555688899999***999999988888877.44 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.34   1.7e+02     124     159 ..    2217    2248 ..    2193    2256 .. 0.82
   2 !   11.2   0.0   0.00027      0.13     112     156 ..    2564    2608 ..    2544    2612 .. 0.83
   3 ?    5.5   0.0     0.015       7.5     117     146 ..    2914    2940 ..    2876    2949 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.34
       T2SSE  124 kavrerglilvsGgTgsGKttllyallkeinksder 159 
                  +    +  +++ Gg g+GK+ +  +ll+ +++  ++
  KKY18692.1 2217 QI---HHGVMMVGGSGTGKSEIWHVLLQALQAV-DN 2248
                  33...666777899*************999887.44 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00027
       T2SSE  112 ealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinks 156 
                    ++ + +evl + ++e+  +++ G+ gsGKt +l ++l ++++ 
  KKY18692.1 2564 TLDTVRHEEVLYSWLAEHRPLMLCGPPGSGKTMTLFSALRKLPNM 2608
                  555667789999999************************999876 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.015
       T2SSE  117 kiaevlrkavrerglilvsGgTgsGKttll 146 
                  +i++v r++   +g +++ G  gsGKttl 
  KKY18692.1 2914 RIDRVFRQP---QGHLILIGVSGSGKTTLS 2940
                  6789999**...****************85 PP

>> AAA_lid_1  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.3e-05    0.0066      11      77 ..    2772    2838 ..    2761    2861 .. 0.70
   2 ?    2.7   0.0      0.29   1.5e+02      46      85 ..    4192    4228 ..    4183    4241 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.3e-05
   AAA_lid_1   11 kiaatflptaikfhyvfnlrdlsnifqgllfssaevlk..apldlirlylheservygdkmveekdlel 77  
                  +  a f p  i+ hyv+  r+l+   +g+   + + l   +   l+r++ he+ r+++d++v e +   
  KKY18692.1 2772 QSQAKFTP-KIQPHYVYSPRELTRWVRGVY-EAIKPLEslSVEGLVRIWGHEALRLFQDRLVSEDERTW 2838
                  44555666.5899***************85.5555444113557******************9876433 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.29
   AAA_lid_1   46 vlkapldlirlylheservygdkmveekdlellekvtlev 85  
                   lk p+dlir  + e   +yg k+ +e d+++l  + +++
  KKY18692.1 4192 PLKLPWDLIRNLITE---MYGGKIDNEGDFKKLSALVTDI 4228
                  5899******99987...6***********9999887764 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.041        21      22      53 ..    2219    2250 ..    2208    2267 .. 0.82
   2 !    8.9   0.0    0.0018       0.9      24      48 ..    2583    2607 ..    2572    2615 .. 0.77
   3 ?    3.1   0.0       0.1        52      23      41 ..    2924    2942 ..    2910    2949 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.041
  Mg_chelatase   22 gHnlllvGppGsGKtmlakrlpsllpplseee 53  
                    +H +++vG +G+GK+ + + l + l ++++ e
    KKY18692.1 2219 HHGVMMVGGSGTGKSEIWHVLLQALQAVDNIE 2250
                    699************99988887777666554 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0018
  Mg_chelatase   24 nlllvGppGsGKtmlakrlpsllpp 48  
                     l+l+GppGsGKtm        lp+
    KKY18692.1 2583 PLMLCGPPGSGKTMTLFSALRKLPN 2607
                    5899**********76555555555 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.1
  Mg_chelatase   23 HnlllvGppGsGKtmlakr 41  
                     +l+l+G +GsGKt l + 
    KKY18692.1 2924 GHLILIGVSGSGKTTLSRF 2942
                    589************9875 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.011       5.6      32      64 ..    2214    2244 ..    2189    2262 .. 0.78
   2 ?    1.1   0.0      0.42   2.1e+02      31      56 ..    2574    2598 ..    2560    2602 .. 0.79
   3 !    8.0   0.0    0.0034       1.7      12      55 ..    2894    2939 ..    2887    2942 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.011
                    EEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHH CS
  FtsK_SpoIIIE   32 vldlkkmashllvaGatgsGKStalntLilSla 64  
                     ++++ +   ++ +G++g+GKS+  ++L+++l 
    KKY18692.1 2214 QIQQIHHG--VMMVGGSGTGKSEIWHVLLQALQ 2244
                    44555555..899****************9985 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.42
                    EEEEGGGS-.SEEEE--TTSSHHHHH CS
  FtsK_SpoIIIE   31 lvldlkkmashllvaGatgsGKStal 56  
                    l++ l+++   l+++G +gsGK+ +l
    KKY18692.1 2574 LYSWLAEHR-PLMLCGPPGSGKTMTL 2598
                    555566666.79***********987 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0034
                    HT---TTEEEEEEETTS-EEEEEGGGS-...SEEEE--TTSSHHHH CS
  FtsK_SpoIIIE   12 rtessqlpvalgkeisgnplvldlkkma..shllvaGatgsGKSta 55  
                     +e+  +p+ l+ ++ +++l +d +     +hl+++G +gsGK+t 
    KKY18692.1 2894 CEEEVDVPLVLFNDVLEHALRIDRVFRQpqGHLILIGVSGSGKTTL 2939
                    566677888999999999999999877779**************95 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1      0.11        53      25      38 ..    1931    1944 ..    1921    1948 .. 0.91
   2 ?    2.9   0.0      0.16        78      21      44 ..    2222    2245 ..    2210    2260 .. 0.82
   3 ?    4.2   0.0     0.065        32      20      41 ..    2583    2605 ..    2572    2630 .. 0.71
   4 ?    3.1   0.0      0.14        70      12      36 ..    2917    2941 ..    2913    2950 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.11
      AAA_30   25 GpAGtGKttalkal 38  
                  GpAGtGKt ++kal
  KKY18692.1 1931 GPAGTGKTESVKAL 1944
                  9*********9987 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
      AAA_30   21 avltGpAGtGKttalkalreawea 44  
                  ++++G+ GtGK+ +  +l +a++a
  KKY18692.1 2222 VMMVGGSGTGKSEIWHVLLQALQA 2245
                  5789*********99999888876 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.065
      AAA_30   20 vavltGpAGtGKttalkal.rea 41  
                    +l Gp+G+GKt++l ++ r++
  KKY18692.1 2583 PLMLCGPPGSGKTMTLFSAlRKL 2605
                  56789********9886541443 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.14
      AAA_30   12 alltsgdrvavltGpAGtGKttalk 36  
                  ++  +++   +l G+ G+GKtt+ +
  KKY18692.1 2917 RVFRQPQGHLILIGVSGSGKTTLSR 2941
                  56667777899***********876 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       8.2   4.1e+03      26     114 ..     958    1049 ..     956    1053 .. 0.61
   2 ?    4.9   0.0     0.071        35      14      37 ..    2222    2245 ..    2217    2277 .. 0.83
   3 ?    1.7   0.0      0.69   3.5e+02      14      34 ..    2584    2605 ..    2578    2620 .. 0.81
   4 ?    6.8   0.0     0.018       9.2      13      33 ..    2925    2945 ..    2920    3013 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 8.2
                  HHHHHHTTSS--SEEEEEET.TCEGGG......B-HHHCCHCEEEE-SS--S-TTSBHHHHHHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHH CS
                  xxxxxxxxxxxxxxxxxxxx.xxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   26 tLlkllagllkpteGeilld.gkdlke......qeleslrkeigvlpqepqlfpeltvrenesdeeiekalsklglkelkdtvvksspssLSgGqk 114 
                   L + ++  ++p  G+ +   ++++++         +sl +ei++  q  ql+p l     ++ +++e++ +++g    + ++vkss +++S G++
  KKY18692.1  958 ALRQWISTFHDPSTGHSQTTdDEETENevlsgnVAFKSLTHEISMRNQVLQLDPPLDF---ARANWLENLEAWIGALC-HLSKVKSSRYQMSIGKQ 1049
                  5666677777777777655523333335666666667788888888888888887753...55556666666666544.44455667777777765 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.071
                  EEEEESTTSSHHHHHHHHTTSS-- CS
                  xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   14 vaivGenGaGKStLlkllagllkp 37  
                  v +vG +G+GKS +  +l++ l+ 
  KKY18692.1 2222 VMMVGGSGTGKSEIWHVLLQALQA 2245
                  789*************99988775 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.69
                  EEEEESTTSSHH.HHHHHHTTS CS
                  xxxxxxxxxxxx.xxxxxxxxx RF
    ABC_tran   14 vaivGenGaGKS.tLlkllagl 34  
                  + + G+ G+GK+ tL+++l +l
  KKY18692.1 2584 LMLCGPPGSGKTmTLFSALRKL 2605
                  6899********6677777665 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.018
                  EEEEEESTTSSHHHHHHHHTT CS
                  xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   13 kvaivGenGaGKStLlkllag 33  
                   + ++G +G+GK+tL + +a 
  KKY18692.1 2925 HLILIGVSGSGKTTLSRFVAW 2945
                  5789***********987765 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   1.1   1.8e-06    0.0009      10      81 ..    3408    3483 ..    3404    3497 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.8e-06
        BRE1   10 kafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKsselieqLke....l 81  
                  ++ ++l+eq+ + ++e ++ e+ +++le+ ++  + +y  +  + +a++ e+ ++ +++++s +l + L +     
  KKY18692.1 3408 EEVDQLEEQALQTKAEAKAIENTIAKLEQSIETYKAEYAVLIGETQAITSEMSTVESKVDRSVKLLDSLSQergrW 3483
                  6889*****************************************************************9955551 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       2.7   1.4e+03      54      70 ..    1931    1947 ..    1927    1952 .. 0.89
   2 ?    2.5   0.0      0.21   1.1e+02      46      67 ..    2218    2239 ..    2202    2263 .. 0.74
   3 !    8.7   0.0    0.0026       1.3      41      62 ..    2575    2596 ..    2563    2626 .. 0.90
   4 ?    0.1   0.0       1.1   5.6e+02      47      64 ..    2923    2940 ..    2911    2956 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.7
   IstB_IS21   54 GpsGvGKshlaialgve 70  
                  Gp+G+GK+    alg +
  KKY18692.1 1931 GPAGTGKTESVKALGLQ 1947
                  9*********9999987 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.21
   IstB_IS21   46 kkenivllGpsGvGKshlaial 67  
                   +++++++G+sG+GKs +   l
  KKY18692.1 2218 IHHGVMMVGGSGTGKSEIWHVL 2239
                  47899***********775554 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0026
   IstB_IS21   41 lsfiekkenivllGpsGvGKsh 62  
                   s+++++  ++l+Gp+G GK+ 
  KKY18692.1 2575 YSWLAEHRPLMLCGPPGSGKTM 2596
                  58******************95 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 1.1
   IstB_IS21   47 kenivllGpsGvGKshla 64  
                  +  ++l+G sG GK+ l+
  KKY18692.1 2923 QGHLILIGVSGSGKTTLS 2940
                  55799**********987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.098        49      22      38 ..    2220    2235 ..    2209    2246 .. 0.75
   2 ?    1.3   0.0      0.58   2.9e+02      25      41 ..    2584    2601 ..    2576    2610 .. 0.80
   3 !    8.1   0.0    0.0045       2.3      20      38 ..    2921    2939 ..    2911    2940 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.098
      AAA_29   22 kgatlltGpsGsGKSTl 38  
                  +g ++++G sG+GKS +
  KKY18692.1 2220 HG-VMMVGGSGTGKSEI 2235
                  56.99**********65 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.58
      AAA_29   25 tlltGpsGsGKS.TllDA 41  
                   +l Gp GsGK+ Tl+ A
  KKY18692.1 2584 LMLCGPPGSGKTmTLFSA 2601
                  6899*******8566655 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0045
      AAA_29   20 dlkgatlltGpsGsGKSTl 38  
                  +++g  +l+G sGsGK+Tl
  KKY18692.1 2921 QPQGHLILIGVSGSGKTTL 2939
                  4578899***********8 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2         4     2e+03      17      29 ..    1931    1943 ..    1930    1950 .. 0.86
   2 ?    4.2   0.0       0.1        51       9      39 ..    2219    2248 ..    2211    2256 .. 0.76
   3 !   10.6   0.0    0.0011      0.55       8      39 ..    2579    2610 ..    2572    2622 .. 0.83
   4 ?    2.9   0.0      0.26   1.3e+02       9      32 ..    2922    2944 ..    2916    2956 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 4
      AAA_19   17 aGpGtGKTrvlkh 29  
                  +++GtGKT+ +k+
  KKY18692.1 1931 GPAGTGKTESVKA 1943
                  899*****99876 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.1
      AAA_19    9 kekvllvtaGpGtGKTrvlkhivallvelgg 39  
                  +++v ++++G GtGK+++ +  ++ l+++ +
  KKY18692.1 2219 HHGV-MMVGGSGTGKSEIWHVLLQALQAVDN 2248
                  4444.5679********99999999888765 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.0011
      AAA_19    8 lkekvllvtaGpGtGKTrvlkhivallvelgg 39  
                  +++++l++ ++pG+GKT +l  +++ l +++ 
  KKY18692.1 2579 AEHRPLMLCGPPGSGKTMTLFSALRKLPNMEV 2610
                  57899***************999988877665 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.26
      AAA_19    9 kekvllvtaGpGtGKTrvlkhiva 32  
                  ++++l++++  G+GKT++    va
  KKY18692.1 2922 PQGHLILIGVSGSGKTTL-SRFVA 2944
                  68899**********975.44444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.099        49       8      33 ..    1930    1959 ..    1929    1993 .. 0.83
   2 ?   -3.0   0.0       9.8   4.9e+03       5      18 ..    2222    2235 ..    2222    2264 .. 0.86
   3 ?    6.1   0.0     0.016       8.1       5      47 ..    2584    2629 ..    2581    2661 .. 0.66
   4 ?    2.6   0.1       0.2        99       5      19 ..    2926    2940 ..    2924    2950 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.099
      AAA_24    8 yGpsgiGKTtlakel....gpkplfidtek 33  
                  yGp+g+GKT ++k l    g  +l++ +++
  KKY18692.1 1930 YGPAGTGKTESVKALglqlGRFTLVFCCDD 1959
                  9************99888777777776666 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 9.8
      AAA_24    5 iliyGpsgiGKTtl 18  
                  ++++G sg+GK+ +
  KKY18692.1 2222 VMMVGGSGTGKSEI 2235
                  5789*******975 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.016
      AAA_24    5 iliyGpsgiGKTtlakel...gpkplfidtekGlksldadkfpdie 47  
                  +++ Gp+g+GKT+++ ++    p+  ++ ++ +++ + +  +++ e
  KKY18692.1 2584 LMLCGPPGSGKTMTLFSAlrkLPNMEVVGLNFSSATTPDLLVKTFE 2629
                  6899***********9998888888888888877665555555444 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.2
      AAA_24    5 iliyGpsgiGKTtla 19  
                  ++++G sg+GKTtl 
  KKY18692.1 2926 LILIGVSGSGKTTLS 2940
                  579**********86 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.025        12      19      45 ..    2222    2248 ..    2207    2254 .. 0.87
   2 ?    1.7   0.0      0.26   1.3e+02      20      49 ..    2585    2613 ..    2579    2617 .. 0.82
   3 ?   -0.4   0.0       1.2   5.9e+02      19      35 ..    2926    2942 ..    2913    2946 .. 0.80
   4 ?    0.9   0.0      0.47   2.4e+02      54     111 ..    3711    3771 ..    3708    3797 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.025
  Zeta_toxin   19 illgGqpGAGKselaellkdelerqgn 45  
                  ++++G++G GKse+ + l ++l++ +n
  KKY18692.1 2222 VMMVGGSGTGKSEIWHVLLQALQAVDN 2248
                  799****************99986655 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.26
  Zeta_toxin   20 llgGqpGAGKselaellkdelerqgnvvrl 49  
                  +l G pG+GK+ ++  + ++l ++ +vv l
  KKY18692.1 2585 MLCGPPGSGKTMTLFSALRKL-PNMEVVGL 2613
                  689**********99999988.46666655 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.2
  Zeta_toxin   19 illgGqpGAGKselael 35  
                  ++l G +G+GK++l++ 
  KKY18692.1 2926 LILIGVSGSGKTTLSRF 2942
                  4667899******9986 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.47
  Zeta_toxin   54 lRelhPeyeeilkadpkkaseltqkdaselvekllqeaiengyniive....gtlrspdvvk 111 
                  l++  P+++e ++ +  k+   ++   ++l +kllq++ e + ni+ +    gtl++  + +
  KKY18692.1 3711 LKCERPDVDE-RRTNLIKMQGEFNTNLRTLERKLLQALNESRGNILDDdhviGTLETLKKEA 3771
                  7888899999.8889999***************************97643334555544444 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.68   3.4e+02       4      22 ..    1930    1948 ..    1929    1990 .. 0.90
   2 ?    5.6   0.0      0.04        20       1      47 [.    2222    2269 ..    2222    2280 .. 0.68
   3 ?    2.2   0.0      0.46   2.3e+02       2      17 ..    2585    2600 ..    2584    2619 .. 0.83
   4 ?   -0.2   0.0       2.6   1.3e+03       2      17 ..    2927    2942 ..    2926    2996 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.68
  RNA_helicase    4 yGpsgeGKStlakeLakal 22  
                    yGp+g+GK+  +k L  +l
    KKY18692.1 1930 YGPAGTGKTESVKALGLQL 1948
                    8***********9987776 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.04
  RNA_helicase    1 iwlyGpsgeGKStlakeLakallkklklkkkdsvys.rnpeddfwdgY 47  
                    ++++G sg+GKS + + L +al+   + +   +v+  + ++++ ++gY
    KKY18692.1 2222 VMMVGGSGTGKSEIWHVLLQALQAVDNIEGVYHVIDsKVMSKEALYGY 2269
                    6799*****************995444444444443355555555665 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.46
  RNA_helicase    2 wlyGpsgeGKStlake 17  
                    +l+Gp+g GK+++  +
    KKY18692.1 2585 MLCGPPGSGKTMTLFS 2600
                    79*********98766 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 2.6
  RNA_helicase    2 wlyGpsgeGKStlake 17  
                    +l G sg GK+tl++ 
    KKY18692.1 2927 ILIGVSGSGKTTLSRF 2942
                    6899********9986 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       7.2   3.6e+03      66     131 ..    1215    1276 ..    1183    1280 .. 0.78
   2 ?    5.5   0.0     0.028        14      44      62 ..    2580    2598 ..    2568    2639 .. 0.76
   3 ?    3.1   0.0      0.16        79      32      76 ..    2910    2954 ..    2888    2975 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 7.2
       Rad17   66 skelgiklrewlnpvslkepdnqksdfkgltekesrflsqiesfkeleLkdakylklqklGddlrt 131 
                  +k   +k++ +  +++    + q+ +f +     ++ +   e+f+e++L++ k   +q + d lr+
  KKY18692.1 1215 AKVWEPKVETFRHGTT--TLSRQRYQFPSNWLPVDQVVDEWEAFSEILLRKDKI--VQDQTDALRA 1276
                  5555666666666665..45667778888888888889999********99887..7777777766 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.028
       Rad17   44 kkriLLisGPsGCgkstvv 62  
                  ++r L+++GP+G gk+ ++
  KKY18692.1 2580 EHRPLMLCGPPGSGKTMTL 2598
                  6789***********9775 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.16
       Rad17   32 kewlkadvLesrkkriLLisGPsGCgkstvvkvLskelgiklrew 76  
                  +++l+ d + ++++  L++ G sG gk+t  + ++   g k+ + 
  KKY18692.1 2910 EHALRIDRVFRQPQGHLILIGVSGSGKTTLSRFVAWMNGLKVFQI 2954
                  678888889999999999************999999999888764 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0019      0.97      24      53 ..    2572    2601 ..    2562    2615 .. 0.88
   2 ?    0.1   0.0         1     5e+02      34      49 ..    2924    2939 ..    2915    2960 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0019
      AAA_25   24 wlvkgllpagelallaGapgtGKttlaldl 53  
                   ++  +l+++   +l+G+pg+GKt+ + + 
  KKY18692.1 2572 EVLYSWLAEHRPLMLCGPPGSGKTMTLFSA 2601
                  56788********************88765 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1
      AAA_25   34 elallaGapgtGKttl 49  
                  +  +l+G +g+GKttl
  KKY18692.1 2924 GHLILIGVSGSGKTTL 2939
                  56799*********98 PP

>> Vps23_core  Vps23 core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       3.4   1.7e+03       4      24 ..    1183    1203 ..    1180    1236 .. 0.84
   2 ?    2.7   0.0      0.25   1.2e+02      36      50 ..    1486    1500 ..    1472    1501 .. 0.90
   3 ?    6.4   0.3     0.018       8.9       7      35 ..    3411    3439 ..    3407    3450 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 3.4
  Vps23_core    4 vaetplsnqllelvaedkAie 24  
                  +a t+l nq le+++  +A  
  KKY18692.1 1183 TARTELENQTLEASSTAQAVS 1203
                  6889***********999975 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.25
  Vps23_core   36 rgkidldtflKqvRe 50  
                  +g + l++flKqvR+
  KKY18692.1 1486 QGELALEEFLKQVRD 1500
                  8999**********7 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.018
  Vps23_core    7 tplsnqllelvaedkAieDtiylLdkald 35  
                  + l +q l+  ae kAie ti  L+++ +
  KKY18692.1 3411 DQLEEQALQTKAEAKAIENTIAKLEQSIE 3439
                  7899*****************99998765 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.4       1.1   5.4e+02     116     198 ..    1182    1278 ..    1124    1297 .. 0.63
   2 ?   10.9   7.2   0.00057      0.29      35     137 ..    3177    3284 ..    3167    3379 .. 0.60
   3 ?    7.7   4.0    0.0057       2.8      33     111 ..    3401    3479 ..    3388    3494 .. 0.63

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.1
         ERM  116 reaeeeakekllealstpsks............eseenveeseteeeeenseeesaeletde..veklsleieeeRvtylekskrlqeqLkeLksel 198 
                  + a +e +++ lea+st++               +  +++ ++  + + + + + +++ ++   v+++++e+e     +l+k k +q+q ++L++ +
  KKY18692.1 1182 KTARTELENQTLEASSTAQAVsfitlvqqckqrAKVWEPKVETFRHGTTTLSRQRYQFPSNWlpVDQVVDEWEAFSEILLRKDKIVQDQTDALRAKI 1278
                  2233333333344444432224444432222221122223333333333334455666666588888999999999999999999999999999877 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00057
         ERM   35 aelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarle...eeserkeeeaerLkeeleeareaeeeakeklle 128 
                  ++l  +k++ +ee+++ L+    +++   ++++  ++  +++k +le+k +ea+++++ ++   +e e +++   + ++ le+ +++    +  +l+
  KKY18692.1 3177 VKLFTQKREDLEEQQRHLNVGLDKLRDTVDKVRDLRASLAQKKTQLEKKNAEANEKLQHMVidqREAESRKAASLEIQTALEKQEREVATRRDVVLN 3273
                  5566667777777777777777777777777777777777777777777777777777776322233333333333444444444444333333333 PP

         ERM  129 alstpsks..e 137 
                   l+++++   e
  KKY18692.1 3274 DLAKAEPAviE 3284
                  33333222321 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0057
         ERM   33 etaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeserkeeeaerLkee 111 
                  +++  L e+  ++ee+a + +++a+++e+ i++l++s e  ++e + l  ++++ ++e++++e++++r  +  + L +e
  KKY18692.1 3401 DRVGPLREEVDQLEEQALQTKAEAKAIENTIAKLEQSIETYKAEYAVLIGETQAITSEMSTVESKVDRSVKLLDSLSQE 3479
                  5555666666667777766666666667777777766666666666666666666666666666666655544444444 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1     0.012       6.1      12      69 ..     870     929 ..     865     952 .. 0.87
   2 ?    7.5   9.1    0.0067       3.3      23      83 ..    3180    3240 ..    3171    3259 .. 0.91
   3 ?    4.9   0.6     0.041        20      43     101 ..    3417    3471 ..    3389    3498 .. 0.64
   4 ?   -2.5   0.2       7.9   3.9e+03      33      61 ..    3753    3781 ..    3735    3796 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.012
  Phage_GP20  12 gkdit..kakldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkak 69 
                  +++     +++++++   tl +++++ dk L dLk    d+++  +q++++q +++k +
  KKY18692.1 870 AQFVRdfSVSVSTLQSKTATLLTTVETVDKALLDLKSCPYDAAAFAEQLNTIQSAVDKLN 929
                 556655567789999***************************************999865 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0067
  Phage_GP20   23 veeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyeakiadlkldn 83  
                   ++ r++l+eq    +  L++L + +  + +L + +++ +++++k++ae+++k++ + +d+
  KKY18692.1 3180 FTQKREDLEEQQRHLNVGLDKLRDTVDKVRDLRASLAQKKTQLEKKNAEANEKLQHMVIDQ 3240
                  57899****************************************************9986 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.041
  Phage_GP20   43 dLkkkakdneeLqkqieelqaknkkakaeyeakiadlkldnaielaLkeakaknekavk 101 
                   L++k  ++++++++i++l++ +++ kaey+  i +++   ai++++++ + k  + vk
  KKY18692.1 3417 ALQTK-AEAKAIENTIAKLEQSIETYKAEYAVLIGETQ---AITSEMSTVESKVDRSVK 3471
                  24444.56788888888888888888888888887765...677777777666666665 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 7.9
  Phage_GP20   33 qlkdrdkqLedLkkkakdneeLqkqieel 61  
                  ++ d d  + +L++ +k+++++ ++i+e 
  KKY18692.1 3753 NILDDDHVIGTLETLKKEAADISRKIAET 3781
                  45555666666666666677777777665 PP

>> Taxilin  Myosin-like coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8  24.3      0.11        55      92     298 ..    3178    3497 ..    3167    3499 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.11
     Taxilin   92 qrareeeekrkelaekfqakLkdiqaqieekserneklreenaelteKlkslieqye..lreehfekllktkelelqlaeaKlqqadallkeeqekk 186 
                  ++ +++ e  +e + +++  L ++++++++ ++ + +l++++ +l++K  +  e+ +  + +++  +  k+  le+q a +K          e+e  
  KKY18692.1 3178 KLFTQKREDLEEQQRHLNVGLDKLRDTVDKVRDLRASLAQKKTQLEKKNAEANEKLQhmVIDQREAESRKAASLEIQTALEKQ---------EREVA 3265
                  44555555555555555555555555555555555555555555555555555544333445555566677788888888888.........55555 PP

     Taxilin  187 krekeyllkeakeltkkvkalketekelkeqlnl............................................................... 220 
                  +r   + l+++ + +  v ++++  ++ k+q                                                                  
  KKY18692.1 3266 TRRDVV-LNDLAKAEPAVIEAQKSVSNIKKQHLTevrsmsnpppgvklamesvctllgfkvdswktiqgiirrddfiasivnydnekkmtpnlrikm 3361
                  554444.56666666666666666655555544447888888******************************************************* PP

     Taxilin  221 ..........................................................YaeKfeefqdtLakSnelFatFkkEmekmtkktkklEke 259 
                                                                             ++  + +++t+ak ++ ++t+k+E   +  +t+ +  e
  KKY18692.1 3362 rneylsnddftyervnraskacgplvqwveaqvnyseildrvgplreevdqleeqalqTKAEAKAIENTIAKLEQSIETYKAEYAVLIGETQAITSE 3458
                  ********************************************************988888999******************************** PP

     Taxilin  260 tnlwkskfektnkallemaeertekkkeieklkkkiqkL 298 
                   +++ sk + + k l ++ +er ++++  ++++ +i +L
  KKY18692.1 3459 MSTVESKVDRSVKLLDSLSQERGRWEEGSKSFETQIGTL 3497
                  ***********************************9887 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.17        84       1      17 [.    2582    2598 ..    2582    2613 .. 0.86
   2 ?    4.4   0.0     0.063        31       3      18 ..    2926    2941 ..    2925    2947 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.17
                  SCEEEEC-TTTCHHHHH CS
       NACHT    1 rlvilqGeaGsGKTtLl 17  
                  r+++l G++GsGKT+ l
  KKY18692.1 2582 RPLMLCGPPGSGKTMTL 2598
                  678999********977 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.063
                  EEEEC-TTTCHHHHHH CS
       NACHT    3 vilqGeaGsGKTtLlq 18  
                  +il G +GsGKTtL +
  KKY18692.1 2926 LILIGVSGSGKTTLSR 2941
                  689**********965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1670  (0.0931452); expected 358.6 (0.02)
Passed bias filter:                      835  (0.0465726); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        73  (0.00407162); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              36  [number of targets reported over threshold]
# CPU time: 2.39u 0.34s 00:00:02.73 Elapsed: 00:00:00.59
# Mc/sec: 21950.01
//
Query:       KKY18693.1  [L=1540]
Description: putative dicer-like protein 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-40  136.6   0.0    1.2e-20   74.0   0.0    3.1  3  Ribonuclease_3   Ribonuclease III domain
      4e-23   82.0   0.1    3.3e-12   46.7   0.0    4.0  2  Ribonucleas_3_3  Ribonuclease-III-like
    4.1e-16   59.3   0.0    1.4e-15   57.6   0.0    1.9  2  Helicase_C       Helicase conserved C-terminal domain
    1.4e-14   54.0   0.1    1.5e-13   50.7   0.1    2.5  1  Dicer_dimer      Dicer dimerisation domain
      3e-11   43.4   0.0    5.5e-11   42.5   0.0    1.3  1  DEAD             DEAD/DEAH box helicase
    1.5e-10   41.3   0.0    3.9e-10   40.0   0.0    1.7  1  ResIII           Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
       0.13   13.0   0.1         33    5.3   0.0    2.6  2  dsrm             Double-stranded RNA binding motif
       0.15   12.3   0.0          1    9.6   0.0    2.4  1  AAA_22           AAA domain


Domain annotation for each model (and alignments):
>> Ribonuclease_3  Ribonuclease III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       6.9   1.5e+04      62      87 ..     385     415 ..     382     419 .. 0.61
   2 !   59.1   0.0   2.4e-19   5.3e-16       1     104 [.    1089    1205 ..    1089    1206 .. 0.83
   3 !   74.0   0.0   5.6e-24   1.2e-20       1     104 [.    1293    1408 ..    1293    1409 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6.9
                     ..................HHCCSTTCHCTSH CS
  Ribonuclease_3  62 fdpprnwlppgy.....klsddekedddadk 87 
                      +++r+w+p+++     +  ++ek+ + ad+
      KKY18693.1 385 AQLHRRWQPSYKakragTWAEEEKKLERADQ 415
                     5789999998876655544444444444555 PP

  == domain 2  score: 59.1 bits;  conditional E-value: 2.4e-19
                      HHHHHHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHTSHHHHH..HHHHCTTCHCCHCHH.....................HHCCSTTCHC CS
  Ribonuclease_3    1 erLeflGDavlklaittylfetypdahegrlsklrsklvsnenla..rlakklglpkflrasefdpprnwlppgy.......klsddekeddd 84  
                      erLef+GD +lk+ ++  lf +yp+++e +++  r  +++n+nl   +++++ +lpkf+r++  +  r w p+g        +  d++ ++d+
      KKY18693.1 1089 ERLEFIGDTFLKMSTSISLFIKYPSESEFDFHVHRMLMICNDNLFdgAVMETRNLPKFIRTQAVNR-RLWYPEGLvlfhgkdANPDKPLKHDG 1180
                      8*******************************************965666799*******655444.44444444799988855555555555 PP

                      .....TSHHHHHHHHHHHHHHHHHC CS
  Ribonuclease_3   85 .....adkvladvvEAliGaiylds 104 
                           a+k+++dv EAliGa yl+ 
      KKY18693.1 1181 ikhslAQKTISDVCEALIGAAYLTA 1205
                      67777*****************985 PP

  == domain 3  score: 74.0 bits;  conditional E-value: 5.6e-24
                      HHHHHHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHTSHHHHHHHHHCTTCHCCHCHH....................HHCCSTTCHC... CS
  Ribonuclease_3    1 erLeflGDavlklaittylfetypdahegrlsklrsklvsnenlarlakklglpkflrasefdpprnwlppgy......klsddekeddd... 84  
                      +rLeflGDa ++++ +++lf  ypd++++ l++ + ++vsn++la +a +lg+ k+l+++  ++++++++  +      k ++d+ e+d    
      KKY18693.1 1293 QRLEFLGDALYDMVCVDFLFGAYPDKDPQWLTEHKMAMVSNRFLAVVAVELGFFKYLQENTISLREQIRNYARevqrflKSGRDKLERDFwte 1385
                      7*********************************************************************88799999988888888666777 PP

                      ...TSHHHHHHHHHHHHHHHHHC CS
  Ribonuclease_3   85 ...adkvladvvEAliGaiylds 104 
                          +k l+d++EA+iGai++ds
      KKY18693.1 1386 idhPPKALSDMIEAYIGAIFVDS 1408
                      788******************97 PP

>> Ribonucleas_3_3  Ribonuclease-III-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.4   8.6e-10   1.9e-06       1     111 [.    1055    1205 ..    1055    1222 .. 0.75
   2 !   46.7   0.0   1.5e-15   3.3e-12       3     124 ..    1273    1423 ..    1272    1425 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 8.6e-10
  Ribonucleas_3_3    1 deelleqaltHkSfangrk............ghNerLefLGdavLklsvseyl.lekaekdegeltklraslvseesl..aeiAkelgLgkv 77  
                       ++el+++a+t  S++ +++            +++erLef+Gd  Lk+s+s  l +++++++e +    r+ ++++++l    + ++ +L k+
       KKY18693.1 1055 NPELALEAVTKDSHNAEEHraeqihfkrgmgKNYERLEFIGDTFLKMSTSISLfIKYPSESEFDFHVHRMLMICNDNLfdGAVMETRNLPKF 1146
                       578999999999995544435555565555589**************987655388889999999999999999999944445567778888 PP

  Ribonucleas_3_3   78 lrl.......................rkgeee..tegsgrekvladaleAliGAiyldk 111 
                       +r                        +k+ ++   + s  +k ++d++eAliGA yl++
       KKY18693.1 1147 IRTqavnrrlwypeglvlfhgkdanpDKPLKHdgIKHSLAQKTISDVCEALIGAAYLTA 1205
                       888788888888888888998877663332222266667778999***********985 PP

  == domain 2  score: 46.7 bits;  conditional E-value: 1.5e-15
  Ribonucleas_3_3    3 elleqaltHkSfangrkghNerLefLGdavLklsvseyllek.aekdegeltklraslvseeslaeiAkelg.................... 73  
                        ll+ a+tH S +n++ ++++rLefLGda+ +++ +++l+   ++kd + lt+ ++++vs++ la +A elg                    
       KKY18693.1 1273 RLLQSAFTHPSCSNASVPNYQRLEFLGDALYDMVCVDFLFGAyPDKDPQWLTEHKMAMVSNRFLAVVAVELGffkylqentislreqirnya 1364
                       699************************************97725668889**********************99999999999777766666 PP

  Ribonucleas_3_3   74 ..Lgkvlrl..rkgeee....tegsgrekvladaleAliGAiyldkgae..vaqefveeki 124 
                          +++l+   +  + e    te  +  k l+d++eA iGAi++d++++  v+++f+e++i
       KKY18693.1 1365 reVQRFLKSgrD--KLErdfwTEIDHPPKALSDMIEAYIGAIFVDSNFDytVVETFFEKHI 1423
                       666666665532..322235567777788****************9876326677777765 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.5     1e+04      32      74 ..     176     219 ..     155     241 .. 0.54
   2 !   57.6   0.0   6.1e-19   1.4e-15      12     108 ..     448     556 ..     438     559 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.5
                 HHHHHHHT...TSTEEEESTT...STHHHHHHHHHHHHTTSSSEEEESG CS
  Helicase_C  32 vklllekk...gikvavlhge...lpqnereeileqfnkgesdvLiatd 74 
                 +k+l+e+    +i +++ +g     ++++ ++il     g+++++++t 
  KKY18693.1 176 TKYLQESLyaeNIICCTGDGHedwWSSEQWKDIL-----GKFNIVVCTA 219
                 5555433353345555555532233333333333.....5556666664 PP

  == domain 2  score: 57.6 bits;  conditional E-value: 6.1e-19
                 HTTTTSEEEEEESSHHHHHH.HHHHHHHT..........TSTEEEEST.TSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHH CS
  Helicase_C  12 leeeggkilifvntidrlek.vklllekk..........gikvavlhg.elpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvt 98 
                 +++++ +++ifv+++ ++    +l++e            gi +  + g + ++ +++e+l++f +g +++L at+vae+G+di+++nlVi+fd++ ++ 
  KKY18693.1 448 RTRDDVRCIIFVEQRATALIlRDLFKELMipgirpaafvGIGSSSMGGgKFTSPKQQETLDNFDEGATNCLFATSVAEEGLDIQECNLVIRFDPCMTMI 546
                 567778899999999966334455533335655555567776666666579************************************************ PP

                 HHHHHHTTSS CS
  Helicase_C  99 syiqriGRtg 108
                 +y q++GR+ 
  KKY18693.1 547 QYLQSRGRAR 556
                 ********94 PP

>> Dicer_dimer  Dicer dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.1   6.6e-17   1.5e-13       2      91 ..     636     723 ..     583     724 .. 0.66

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 6.6e-17
  Dicer_dimer   2 islLnrycatlpsdeytdlrpeyevkevedk................ergkfqaevtLPsnsplrkiegepmstkklAkrsaAfeackeLhkaglLdd 83 
                  + +L++y++tl+                                   ++g+fq   +LP+ sp+r + ge  s+k lAk+saA+ +c++L+++g+Ldd
   KKY18693.1 636 LIILENYASTLR------------------RlsaeaiasvefvpqhlAQGSFQYMALLPDESPFRGAIGESKSRKLLAKQSAAYHTCVKLYELGHLDD 715
                  233444444443..................044444444455555569************************************************** PP

  Dicer_dimer  84 hLlPlske 91 
                   ++++ +e
   KKY18693.1 716 TFNSTIRE 723
                  ***99876 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   2.5e-14   5.5e-11       3     136 ..     111     250 ..     109     285 .. 0.76

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 2.5e-14
                 HHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS......TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET.TSSH...HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx...xxxx RF
        DEAD   3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet......kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliig.gvaa...rdql 91 
                 +Q+e ++ +   ++v++  +TG+GKTl++ + +   v +        g++   a++++    La+q+ + l++++   ++ ++  +g g++    ++q+
  KKY18693.1 111 YQQELYERAS-VDNVIAVLPTGAGKTLIATMLLK-DVCKLevqrkdLGQPPRTAFFLVDKNFLAKQQTKYLQESLYAENIICC--TGdGHEDwwsSEQW 205
                 6777777776.679**************877665.554556888766888889**********************96554444..33244443347788 PP

                 HHHHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  92 skldngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldq 136
                 +++  + +ivv t + l + l +g++++ q+++l+lDEa+   ++
  KKY18693.1 206 KDILGKFNIVVCTAEVLNQALGRGYVKIPQINLLILDEAHHTKKD 250
                 888677***************9******************99887 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   1.8e-13   3.9e-10       6     169 ..     110     280 ..      97     282 .. 0.72

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 1.8e-13
                 HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.............-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B-- CS
      ResIII   6 eyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee........kflflvprkslleqtleefkkflseaykeigkkvsgdkkka 96 
                  yQ+e  e+           +++ +++TG+GKTl+a+ l + + k + ++         ++flv+++ l +q  + +++ l  ++       +gd+++ 
  KKY18693.1 110 AYQQELYERA-------SVDNVIAVLPTGAGKTLIATMLLKDVCKLEVQRkdlgqpprTAFFLVDKNFLAKQQTKYLQESLYAEN---IICCTGDGHED 198
                 3333333332.......345899*************8888888876655579*****999***********99977766666553...33333333333 PP

                 .............-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHHH........HHT---....SEEEEEESS- CS
      ResIII  97 ......kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswrei........lekfke....avllglTATp 169
                        +    + +i+v t + l++++      +   +  +++++i DEaH++++++ + +i        +    +      ++ +TA p
  KKY18693.1 199 wwsseqWKDILGKFNIVVCTAEVLNQAL-----GRGYVKIPQINLLILDEAHHTKKDHPYARIikdhylgeK----DaalrPRIFSMTASP 280
                 33333222357888**************.....88889999999*************99*997543333222....144558888888877 PP

>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.018        40      46      66 ..     685     706 ..     677     707 .. 0.81
   2 ?    5.3   0.0     0.015        33      26      67 .]    1466    1507 ..    1458    1507 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.018
                 EEEES.SHHHHHHHHHHHHHHH CS
        dsrm  46 sGvgs.nKKeAeqsAAedalek 66 
                 +G+++  K +A+qsAA + + k
  KKY18693.1 685 IGESKsRKLLAKQSAAYHTCVK 706
                 6777646779********9966 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.015
                  STSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH CS
        dsrm   26 pphslpkFvvtvkvngklygsGvgsnKKeAeqsAAedalekL 67  
                  p h+++   + v+v g++++ +++ + K A  +A+e+al+ L
  KKY18693.1 1466 PYHEKKMTAAAVIVHGEIISNATYESGKYARVKASEEALRLL 1507
                  55665566678999*************************987 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00045         1      13     103 ..     129     247 ..     124     259 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00045
      AAA_22  13 esGtGKTtllrrlleqldeeakaee..........................erpevv...fvtlpsst....sskdllrellralglelkaerlsseel 78 
                 ++G+GKT+ + +ll+  ++ + +++                          +++  +    +++++++     s++ ++++l +++    +     e l
  KKY18693.1 129 PTGAGKTLIATMLLKDVCKLEVQRKdlgqpprtafflvdknflakqqtkylQESL-YaenIICCTGDGhedwWSSEQWKDILGKFNIVVCT----AEVL 222
                 799*********9999998888888999666666666666666655554432222.23555555555555533344466666666654444....4555 PP

      AAA_22  79 lealeqalraravielliiDEaqhl 103
                  +al +   +   i lli+DEa+h 
  KKY18693.1 223 NQALGRGYVKIPQINLLILDEAHHT 247
                 56666666665559*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.94u 0.29s 00:00:01.23 Elapsed: 00:00:00.48
# Mc/sec: 9624.96
//
Query:       KKY18694.1  [L=356]
Description: putative tor signaling pathway regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-95  319.0  10.0    3.4e-95  318.8  10.0    1.0  1  TAP42     TAP42-like family
  ------ inclusion threshold ------
       0.41   10.6   2.4       0.67    9.9   0.9    2.0  2  AvrM_N    Flax-rust effector AvrM N-terminal domain


Domain annotation for each model (and alignments):
>> TAP42  TAP42-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.8  10.0   3.8e-99   3.4e-95       2     319 .]       9     346 ..       8     346 .. 0.94

  Alignments for each domain:
  == domain 1  score: 318.8 bits;  conditional E-value: 3.8e-99
                 HHHHHHHHHHHHH.HHC-S-TTSHHHHHHHHHHHHHHHHHHHHHHHHTTT-SSS-CCCS-TTTGGGGGHHHHHHHHHCT---..GGGHHHHHHHHHHHH CS
       TAP42   2 selfekalklyeeslessapsnseeyqekvkkaiaalekaaklvsqlslFSsNEsledistsdLkyLlvpyylaeltqkiqssdpeeRlevLkrakeyy 100
                 ++ f+ ++++   +l+s  +++ e+yq+++ +ai+a+e ++++v ql+lFSsNE+++++stsd++yL+++++lael++k  +   ++R  +L++a ++y
  KKY18694.1   9 RSKFDLVKSKEA-ELSSLPSTTGEQYQQTLVAAINAYEACRSQVIQLALFSSNEDFDEVSTSDIQYLAIDFLLAELLLKSYQ---SDRAGTLRKAVALY 103
                 566777777777.47777799999**********************************************************...************** PP

                 HHHHCCHHHTTS....................S----.....-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHH CS
       TAP42 101 eeFlkrlesyellseeekklleeleeeekyseseeef.....sdaaarReeKIarfkeeKeleekleelkkrveseeeDeeevRelylaqlklavlkaf 194
                 e+Fl+rl++y+ll++e+kk +e+l++e+        f     sd  +rR  K++r++eeK+l++kle+l++++++ + D+e+ R+l la+l+l v ++f
  KKY18694.1 104 EAFLERLDDYGLLQKEDKKFFERLQREQLR------FslvtsSDFGERRRVKVERYQEEKALKQKLEYLRQQEQQINVDDETIRQLRLAELQLQVKQTF 196
                 *********************777665443......2335557778***************************************************** PP

                 HHHHHHHHHHHHHC...--XXXXX.............................XXXXXXX..XXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXX CS
       TAP42 195 qelesieqEleiLeaapkeeeqee.............................skakkgpllskqgkplrPftilstReelqkkVfgpghslPtMtvdE 264
                  +l++++qE +i++ ap+++++++                              + k+g++l+k+gkp++Pft++s+R++l+++Vf+p+h+lPtM+++E
  KKY18694.1 197 SSLDMMSQEYDIVSRAPQPQRNGQshsandsrererhgdvysdrldvnlrgglGRGKNGAILTKEGKPIQPFTLTSRRQDLRNGVFRPSHNLPTMSIEE 295
                 ********************9999*****************************999******************************************* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXX....XXXXXXXXXXXXXXXXXXX CS
       TAP42 265 yleeevrrGniiegggeasakeeeeeedeeedeekadeeetqkarawDefkddnp 319
                 yleee rrG+iieggge+s +++e+   +e++ e ad +et+karawDe++++np
  KKY18694.1 296 YLEEEKRRGGIIEGGGEKSMQQPEP---DEDNVELAD-QETMKARAWDEYVETNP 346
                 *************************...888889999.****************8 PP

>> AvrM_N  Flax-rust effector AvrM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.34     3e+03      21      46 ..      68      99 ..      60     105 .. 0.52
   2 ?    9.9   0.9   7.5e-05      0.67       8      58 ..     155     207 ..     151     211 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.34
      AvrM_N 21 paevekLspdeli......RYvaerdtnvekm 46
                 +++++L  d l+       Y ++r   ++k 
  KKY18694.1 68 TSDIQYLAIDFLLaelllkSYQSDRAGTLRKA 99
                55666666554441111223677777776664 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 7.5e-05
      AvrM_N   8 lgkvfkedmkflkpaevekLspdeliRY..vaerdtnvekmarkLykaakeyk 58 
                 + k++k+++++l+ +e +    de+iR   +ae   +v++    L+ +++ey 
  KKY18694.1 155 EEKALKQKLEYLRQQEQQINVDDETIRQlrLAELQLQVKQTFSSLDMMSQEYD 207
                 569************************7336********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1079  (0.0601818); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2505.28
//
Query:       KKY18695.1  [L=473]
Description: putative serine threonine-protein kinase rio2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-40  139.3   0.0      1e-28  100.3   0.0    2.3  2  RIO1         RIO1 family
    1.8e-23   82.6   0.0    3.6e-23   81.6   0.0    1.5  1  Rio2_N       Rio2, N-terminal
    3.2e-06   26.6   0.0    2.3e-05   23.8   0.0    2.1  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
    2.9e-05   24.1   0.2      0.042   13.8   0.1    2.7  2  APH          Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.19   11.6   0.2         22    4.9   0.1    2.6  2  ACT          ACT domain
        1.7    7.5  11.5        2.5    7.0  11.5    1.2  1  Paf1         Paf1


Domain annotation for each model (and alignments):
>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   0.0   3.4e-32     1e-28       1     141 [.      91     228 ..      91     231 .. 0.89
   2 !   36.6   0.1   1.1e-12   3.3e-09     144     180 ..     302     338 ..     299     344 .. 0.92

  Alignments for each domain:
  == domain 1  score: 100.3 bits;  conditional E-value: 3.4e-32
                 EEEEEEETTTEEEEEEEE-S---SS-HHHHCTTTST...TSTCG--GS-HHHHHHHHHHHHHHHHHHHHHTT--S--EEEEETTEEEEE--EETTEEGG CS
        RIO1   1 nVyhavsedgkevaiKiyktstteFkkrkkyvsgek...rfkdrksktnprklvklwaekEfrnLkrleeagvpvPkpielkrhvlvmefigedgvaap 96 
                 +++++++++g++ ++Ki+++++ +F+++k+ +++ +   +  ++   + + +++kl+a kEf+ +krl eagvpvP+p   +rh lvme+++  g+++ 
  KKY18695.1  91 DIFVVADSKGTQHVLKIHRLGRISFRTVKNNRDYGRgrqKTAASSAGSYWMYMSKLAALKEFTFMKRLWEAGVPVPEPRSQNRHTLVMELVD--GFPLR 187
                 699************************99988875410033444455679******************************************..***** PP

                 BHHHCG-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEET CS
        RIO1  97 klkdveeeeeaeelyeevleemrklykeaglvHaDLSeyNvlvde 141
                 +++ v+   + ++ly+e+++ +++ ++  gl+H+D++e+N+l++e
  KKY18695.1 188 QIRTVP---DPRSLYAELMA-LIVRLAGLGLIHGDFNEFNILIKE 228
                 ******...999********.667777***************986 PP

  == domain 2  score: 36.6 bits;  conditional E-value: 1.1e-12
                 EEE--GTTEEETTSTTHHHHHHHHHHHHHHHHHTTC- CS
        RIO1 144 vviIDvsQaveldhpnalefLerDveniikfFrrkgv 180
                 ++iID++Q++++dhp+a++++ rDv++i +fF+r++ 
  KKY18695.1 302 PIIIDFPQMISIDHPDAETYFLRDVDCIKRFFERRFR 338
                 589*******************************986 PP

>> Rio2_N  Rio2, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.0   1.2e-26   3.6e-23      14      82 .]       4      74 ..       2      74 .. 0.97

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 1.2e-26
      Rio2_N 14 avEmgmrnhevVptelieeisrlk.eeevkkrlsrllkaklisr.ktakydGYkLtyeGyDyLALktlvkr 82
                 vE g+rnhevVpt li+++s+l+ +++v+k++s+l+ka+li++ k+ kydGY+Lty+G+DyL+L++l k+
  KKY18695.1  4 KVENGSRNHEVVPTPLIAQLSGLRaNSGVQKSISTLAKANLIAKvKNSKYDGYRLTYGGLDYLSLHALLKQ 74
                59**********************999****************************************9885 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   7.8e-09   2.3e-05      31     157 ..     120     232 ..     106     240 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 7.8e-09
         Kdo  31 alrkyyrggllgkls.kdlyrfklgrtravrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwaelaeelkrallkavg 128
                 + r y rg++    s    y++ ++++ a +Ef  +krL eagv+vp+p          + r  l++e ++g+  L ++ +      +   r l+ ++ 
  KKY18695.1 120 NNRDYGRGRQKTAASsAGSYWMYMSKLAALKEFTFMKRLWEAGVPVPEPR--------SQNRHTLVMELVDGFP-LRQIRT------VPDPRSLYAELM 203
                 56778888765444304458888************************994........456789********95.777777......577889999999 PP

         Kdo 129 rliaklhragvnHadlyaknillqqeeee 157
                 +li +l  +g+ H+d++  nil+++ ee+
  KKY18695.1 204 ALIVRLAGLGLIHGDFNEFNILIKEVEEG 232
                 9***********************98733 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   1.4e-05     0.042      35     106 ..     146     210 ..      80     213 .. 0.70
   2 !    7.9   0.0   0.00085       2.5     167     182 ..     213     230 ..     210     236 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHH CS
         APH  35 eeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalh 106
                   + +e+ +++ L +agvpvPe+      ++ + l+++l+ + p r++++    ++ + l+++l +++ +l 
  KKY18695.1 146 LAALKEFTFMKRLWEAGVPVPEPRS----QNRHTLVMELVDGFPLRQIRT---VPDPRSLYAELMALIVRLA 210
                 45667888****************9....7888889**************...8888888888888777775 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00085
                 EEE-SS-SGGGEEEC... CS
         APH 167 vllHgDlhpgNllvd..p 182
                 +l+HgD++  N+l++  +
  KKY18695.1 213 GLIHGDFNEFNILIKevE 230
                 69************9553 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.016        49      39      61 ..      83     107 ..      75     109 .. 0.83
   2 ?    4.9   0.1    0.0074        22      41      66 ..     219     244 ..     214     245 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.016
                 T..ECEEEEEEEEEEHHHHHHHHHH CS
         ACT  39 k..vagivfvvivvdeedleevlea 61 
                 +  v++++++++v+d +++++vl+ 
  KKY18695.1  83 QigVGKESDIFVVADSKGTQHVLKI 107
                 344789****************986 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0074
                 CEEEEEEEEEEHHHHHHHHHHHHTTC CS
         ACT  41 agivfvvivvdeedleevlealkkle 66 
                  +++++ i++ ee++e+++e+lk+l+
  KKY18695.1 219 FNEFNILIKEVEEGDEAIEEELKQLP 244
                 678999999***************97 PP

>> Paf1  Paf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  11.5   0.00083       2.5     333     409 ..     360     435 ..     335     451 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00083
        Paf1 333 dklvvklre..lneeelkarekresefdpleeekeeeeeeeeeeeeekseeeeekeeekeeaeeeseaeseeessdeee 409
                 ++l+v+ ++  ++ +++k+ e++ +e  + + +++ee e +e  ee+  +ee+++eee++++ee+++ ++eee++ +++
  KKY18695.1 360 RRLDVEAEAsgFSGKMAKELERYMRE-VGAGGDSDEEGESREVLEED--SEEKSEEEEENDQEEGEDLKAEEENERDDT 435
                 55555544322788899999999999.34444434444444433333..333444444444444444444444443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1238  (0.0690501); expected 358.6 (0.02)
Passed bias filter:                      651  (0.0363099); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.52
# Mc/sec: 2718.29
//
Query:       KKY18696.1  [L=909]
Description: putative 26s proteasome regulatory subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     3e-119  398.0   4.7   5.2e-119  397.2   4.7    1.4  1  RPN1_RPN2_N  RPN1/RPN2 N-terminal domain
      8e-29   99.5   0.0    1.5e-28   98.6   0.0    1.5  1  RPN1_C       26S proteasome non-ATPase regulatory subunit RPN
    2.1e-18   65.7  18.8    4.4e-06   26.9   0.1    8.9 10  PC_rep       Proteasome/cyclosome repeat
  ------ inclusion threshold ------
      0.029   14.5   0.0      0.076   13.1   0.0    1.7  1  AAA_2        AAA domain (Cdc48 subfamily)
       0.11   12.9   2.1        4.7    7.6   0.0    3.7  3  TPR_12       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> RPN1_RPN2_N  RPN1/RPN2 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  397.2   4.7  1.4e-122  5.2e-119       1     309 []      66     366 ..      66     366 .. 0.99

  Alignments for each domain:
  == domain 1  score: 397.2 bits;  conditional E-value: 1.4e-122
  RPN1_RPN2_N   1 LellverlkdadaelaklaLeaLkeeirtstssmTSvPkPLKfLrphyetlkeiyetlkkskakklladilsvlamtlsdegkresLkyrl.egsked 97 
                  Le+lverl+++d++l+k+aLe++k+ i+tstssmT+vPkPLKfLrphy++l+++ye+++  +++ +lad lsvl+mt+ de+k e+Lkyrl +g+++d
   KKY18696.1  66 LEMLVERLQEPDTTLYKPALEQIKTFIKTSTSSMTAVPKPLKFLRPHYDDLAALYEKWTPGQDRDSLADTLSVLGMTYGDEEKLETLKYRLlAGTSDD 163
                  8*****************************************************************************************725688** PP

  RPN1_RPN2_N  98 igsWGheYvrhLaaeiaeeyqerqeeekeeetkekkkkvkellelvkeivpfllkhnaeaeAvDLllEvekleklvklvdeenyqrvclYLlscakyl 195
                  +gsWGheY+rhLa ei++eyq+r ++e         k+v++l++l+ +++p++lkhnaea+AvDLl E+e +e++ k+vde++y+rvclY++s++++l
   KKY18696.1 164 LGSWGHEYIRHLALEIGQEYQNRLNDE---------KEVQDLVDLALSLIPYFLKHNAEADAVDLLSELEMIEEIIKYVDENTYARVCLYMVSMVNLL 252
                  **************************9.........99************************************************************ PP

  RPN1_RPN2_N 196 aepddvellrvafeiyrklkkyseaLrvalrlndkelvkevfkaaedklvkkQlayllarqqvkleleeledededlneilsneklsehfkaLakdLd 293
                  ++p+d+++l++a++iy+k++k+++a+++a+rlnd +l++++f+a++d  vkkQ+a+l+arqq+ l+  ++++e+++++e+l+n++ls+hfk+LakdL+
   KKY18696.1 253 TYPEDQQFLKTAHDIYVKYNKLTQAIIIAIRLNDLDLIRSDFDATNDVAVKKQMAFLVARQQIWLNPPTETEEEQEIAECLNNTQLSNHFKTLAKDLN 350
                  ********************************************************************9***************************** PP

  RPN1_RPN2_N 294 vlepktpediYKshLe 309
                  +l+p+ pediYK+hLe
   KKY18696.1 351 ILDPRIPEDIYKTHLE 366
                  ***************7 PP

>> RPN1_C  26S proteasome non-ATPase regulatory subunit RPN1 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.6   0.0   4.1e-32   1.5e-28       1      54 []     852     905 ..     852     905 .. 0.99

  Alignments for each domain:
  == domain 1  score: 98.6 bits;  conditional E-value: 4.1e-32
      RPN1_C   1 VgqaGkpktItGfqThttPVlLaageRAELateeYiplssvLEgivilkknpdy 54 
                 VgqaG+pktItG+qT++tPV+La geRAEL++eeY+plss+LEg+vil+knp++
  KKY18696.1 852 VGQAGRPKTITGWQTQSTPVVLAFGERAELEDEEYLPLSSTLEGLVILRKNPEW 905
                 9****************************************************9 PP

>> PC_rep  Proteasome/cyclosome repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.1   3.8e+03      10      32 ..     140     163 ..     138     165 .. 0.77
   2 ?   -0.0   0.0       0.4   1.4e+03       2      33 ..     423     453 ..     422     455 .. 0.80
   3 !    8.6   0.2   0.00074       2.7       1      24 [.     456     481 ..     456     487 .. 0.93
   4 !   26.9   0.1   1.2e-09   4.4e-06       1      33 [.     495     527 ..     495     529 .. 0.93
   5 !    8.3   0.0   0.00092       3.3       2      26 ..     533     557 ..     532     564 .. 0.77
   6 ?   -2.9   0.0       3.2   1.2e+04       4      16 ..     574     586 ..     574     603 .. 0.64
   7 ?   -2.4   0.0       2.4   8.5e+03      11      20 ..     615     630 ..     613     643 .. 0.47
   8 ?    1.5   0.0      0.13   4.7e+02      16      33 ..     703     720 ..     690     721 .. 0.72
   9 !   21.0   0.1   9.1e-08   0.00033       1      29 [.     723     751 ..     723     755 .. 0.92
  10 ?    3.4   0.1     0.032   1.2e+02       4      16 ..     763     775 ..     763     778 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.1
                 CTTSTCHHHHHHHH.HHHHHHSSH CS
      PC_rep  10 haGsgneeaislLk.pylsdtsae 32 
                 ++ +g+ee ++ Lk  +l  ts++
  KKY18696.1 140 GMTYGDEEKLETLKyRLLAGTSDD 163
                 67789*******996667777765 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.4
                 HHHHHHHHCTTSTCHHHHHHHHHHHHHHSSHH CS
      PC_rep   2 AllALGlihaGsgneeaislLkpylsdtsaev 33 
                  +++LG++  +   + +++ +++  + +++ +
  KKY18696.1 423 TTASLGMLLQWDVEG-GLDKIDKFTYASEDPI 453
                 689********6666.9999998888887776 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00074
                 HHHHHHHHHCTTSTCH..HHHHHHHH CS
      PC_rep   1 GAllALGlihaGsgne..eaislLkp 24 
                 GAllA G+++ G+ ++  +a++lL++
  KKY18696.1 456 GALLAYGVLNSGVKMDadPALALLSD 481
                 9***********************85 PP

  == domain 4  score: 26.9 bits;  conditional E-value: 1.2e-09
                 HHHHHHHHHCTTSTCHHHHHHHHHHHHHHSSHH CS
      PC_rep   1 GAllALGlihaGsgneeaislLkpylsdtsaev 33 
                 +++++LGl +aGs++e+++++L+p++ dts ++
  KKY18696.1 495 ASIMGLGLSYAGSNREDVLAVLLPIVEDTSLDM 527
                 589**************************9876 PP

  == domain 5  score: 8.3 bits;  conditional E-value: 0.00092
                 HHHHHHHHCTTSTCHHHHHHHHHHH CS
      PC_rep   2 AllALGlihaGsgneeaislLkpyl 26 
                 A+ +LGli+ Gsgn  + + + + l
  KKY18696.1 533 AAVSLGLIFVGSGNHVISEAIAQTL 557
                 899***********86655555555 PP

  == domain 6  score: -2.9 bits;  conditional E-value: 3.2
                 HHHHHHCTTSTCH CS
      PC_rep   4 lALGlihaGsgne 16 
                 +ALGl+ +  g++
  KKY18696.1 574 MALGLALLYFGRQ 586
                 6999987655555 PP

  == domain 7  score: -2.4 bits;  conditional E-value: 2.4
                 TTSTCH......HHHH CS
      PC_rep  11 aGsgne......eais 20 
                 a+ g++      e++ 
  KKY18696.1 615 AWAGTGtvlklqELLH 630
                 5555551133334444 PP

  == domain 8  score: 1.5 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHSSHH CS
      PC_rep  16 eeaislLkpylsdtsaev 33 
                   +++ L+ y +d++++v
  KKY18696.1 703 MKVYDTLSRYSHDNDNDV 720
                 479999999999999976 PP

  == domain 9  score: 21.0 bits;  conditional E-value: 9.1e-08
                 HHHHHHHHHCTTSTCHHHHHHHHHHHHHH CS
      PC_rep   1 GAllALGlihaGsgneeaislLkpylsdt 29 
                 +A++++Gl++aG++n ++ +lL++++s++
  KKY18696.1 723 NAIFSMGLLGAGTNNARLAQLLRQLASYY 751
                 59***********************9875 PP

  == domain 10  score: 3.4 bits;  conditional E-value: 0.032
                 HHHHHHCTTSTCH CS
      PC_rep   4 lALGlihaGsgne 16 
                 +A+Gl+h+G g+ 
  KKY18696.1 763 IAQGLVHMGKGTM 775
                 69*******9986 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.1e-05     0.076      91     151 ..     508     569 ..     502     587 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.1e-05
                 --HHHHHHHHHHHH--EE-------EE-T.T-EEEEEE--TTHHHHTTTS-STTTTSGGG-- CS
       AAA_2  91 SregVqrdLLqileggtltdkqgrkvdtk.nilfImtgafgsskisdesrskeeeeekkkee 151
                  re+V+ +LL+i+e++ l  +   +   +   +f+ +g+   s+ + ++ ++e+++++ k++
  KKY18696.1 508 NREDVLAVLLPIVEDTSLDMQLSAMAAVSlGLIFVGSGNHVISEAIAQTLMDEDRQKQLKDK 569
                 69*****************9999666665156666777777777766555544444444444 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0013       4.7      24      59 ..     111     147 ..     110     151 .. 0.88
   2 ?    0.6   0.0      0.19   6.9e+02       3      59 ..     531     587 ..     529     598 .. 0.76
   3 ?    0.9   0.3      0.16   5.6e+02      38      57 ..     734     753 ..     732     757 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0013
      TPR_12  24 ellekaleiarrl.lGpdhpltattlrnLgrlyralg 59 
                  +++   ++++++ +G d++ +a tl  Lg++y   +
  KKY18696.1 111 PHYDDLAALYEKWtPGQDRDSLADTLSVLGMTYGDEE 147
                 68999999**9999******************96655 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.19
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyr.alg 59 
                 a a++ l+++    g++  ++++ ++ ++  r+ + +d+ +t     +L+ ly+ +++
  KKY18696.1 531 AMAAVSLGLIFVGSGNHVISEAIAQTLMDEDRQKQLKDK-WTRFMALGLALLYFgRQE 587
                 556677888888999999999999999999988877777.888888888888853444 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.16
      TPR_12  38 GpdhpltattlrnLgrlyra 57 
                 G++++ +a+ lr L+ +y++
  KKY18696.1 734 GTNNARLAQLLRQLASYYHR 753
                 7899999*********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (909 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 6492.82
//
Query:       KKY18697.1  [L=262]
Description: putative mitochondrial 54s ribosomal protein 41 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.5e-08   32.5   0.0    1.7e-07   31.5   0.0    1.5  1  Ribosomal_L23  Ribosomal protein L23


Domain annotation for each model (and alignments):
>> Ribosomal_L23  Ribosomal protein L23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   9.2e-12   1.7e-07      21      79 ..     110     179 ..     100     184 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 9.2e-12
                    EEEEE-SS-THHHHHHHHHHHHT--EEEEEEEEE--EBESSSSS............EEBE--EEEEEEEES CS
  Ribosomal_L23  21 yvFeVakdanKleikkaveklFgVkVekVntlnvkgkkkrvgrk............vgrrksyKkaiVtLk 79 
                    + F V++ +nK+++k+++  +++V+V  +++ + ++k+ r +                r  s Kk++V+L 
     KKY18697.1 110 ASFWVPLWFNKIDMKDYLLRVYDVEVVHIRSSVHQQKVYREQ-IlerggkipnrgrLIRPMSKKKMTVQLV 179
                    679***********************************9632.234444456655555666********93 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 1688.30
//
Query:       KKY18698.1  [L=393]
Description: putative porphobilinogen deaminase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-68  230.5   0.0      2e-68  230.0   0.0    1.2  1  Porphobil_deam   Porphobilinogen deaminase, dipyromethane cof
      4e-20   72.0   0.7    7.9e-20   71.0   0.7    1.5  1  Porphobil_deamC  Porphobilinogen deaminase, C-terminal domain


Domain annotation for each model (and alignments):
>> Porphobil_deam  Porphobilinogen deaminase, dipyromethane cofactor binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.0   0.0   2.2e-72     2e-68       2     202 ..      66     279 ..      65     281 .. 0.93

  Alignments for each domain:
  == domain 1  score: 230.0 bits;  conditional E-value: 2.2e-72
  Porphobil_deam   2 rigtRkSkLAlaqaelvaeaLke...eeeveivtikt.kGDkildkpLakiggkglFtkeleeaLlegeidlaVhSlKDlptelpeglelaavlk 92 
                     ++gtRkSkLAl+q++l+++aL++   +++++i + +t  GD ++ +p++++  k+l+t+ele+ L+e+e+d++VhSlKD+pt+lpeg+ l+ +++
      KKY18698.1  66 NVGTRKSKLALVQTDLIVSALSTawpDKRFNICAHNTaAGDIDKVTPFKDMPVKNLWTHELERMLVEEELDVLVHSLKDVPTQLPEGCILGGIPQ 160
                     69*******************6667667798887776379******************************************************* PP

  Porphobil_deam  93 redprDvlvvks.....sleelpegavvgTsSlRRkaqlkklrpdlevkdlRGnvdtRlrkldeg..eydaiiLAaAGLkRlgleerisevlspe 180
                     redprD++v+k+     +++elpeg+v+gTsS+RR+aq+  ++p+l+++d+RGnv tRl+kld++  ++da+iLA+AGL Rlgle+ri+++l+++
      KKY18698.1 161 REDPRDAFVLKAgrprcTIDELPEGSVIGTSSIRRSAQIALKHPKLKIVDMRGNVPTRLSKLDAEgsQFDALILASAGLIRLGLEHRITQYLDSK 255
                     *********955666779********************************************877778********************999*998 PP

  Porphobil_deam 181 e..llpavgQGalavevrkedeel 202
                     +  +l+avgQGa++ e r++d+++
      KKY18698.1 256 NggMLYAVGQGAIGTELRESDTAM 279
                     888*****************9876 PP

>> Porphobil_deamC  Porphobilinogen deaminase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.7   8.8e-24   7.9e-20       2      74 ..     293     369 ..     292     370 .. 0.91

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 8.8e-24
                      HHHHHHHHHHHHTT--TTSSEEEEEEEETTE....EEEEEEEE-TTS..S-EEEEEEEE.-GGGHHHHHHHHHHHHH CS
  Porphobil_deamC   2 levlaERallkeLeGGCsvPiGvyaeveane...elkLkglvlsldglksaveeaeakg.eleeaeelGkklaeell 74 
                      l++laER+ll++LeGGCs+P+Gv +e  +++   +l+L++lv+s +g++sa +e+   + ++e aee G k+aeel+
       KKY18698.1 293 LACLAERSLLRTLEGGCSAPLGVETEWIGQSghkRLQLRALVVSVNGKESAAIEKDEVIdNVEAAEEFGVKVAEELR 369
                      79************************99666788***************988888777779**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2618.19
//
Query:       KKY18699.1  [L=901]
Description: putative atp-dependent protease la 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-68  229.1   0.2    8.2e-68  228.0   0.2    1.6  1  Lon_C           Lon protease (S16) C-terminal proteolytic dom
    1.7e-26   93.4   0.0    3.4e-26   92.4   0.0    1.6  1  LON_substr_bdg  ATP-dependent protease La (LON) substrate-bin
    8.1e-24   84.5   0.0    3.7e-23   82.4   0.0    2.1  2  AAA             ATPase family associated with various cellula
    1.4e-07   31.6   0.0    4.9e-07   29.8   0.0    2.1  1  AAA_5           AAA domain (dynein-related subfamily)
      1e-06   28.6   0.0    2.1e-06   27.6   0.0    1.6  1  ChlI            Subunit ChlI of Mg-chelatase
    1.1e-06   29.2   0.0      6e-06   26.7   0.0    2.4  1  AAA_16          AAA ATPase domain
    2.1e-05   24.3   0.0    0.00011   22.0   0.0    2.1  2  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
    0.00015   22.1   0.1     0.0053   17.0   0.1    2.6  1  AAA_22          AAA domain
    0.00031   20.6   0.0    0.00088   19.1   0.0    1.8  1  AAA_3           ATPase family associated with various cellula
    0.00064   19.5   0.0     0.0017   18.1   0.0    1.7  1  IstB_IS21       IstB-like ATP binding protein
     0.0014   18.8   0.0     0.0047   17.1   0.0    1.9  1  AAA_2           AAA domain (Cdc48 subfamily)
     0.0057   16.8   0.3      0.015   15.4   0.0    1.9  1  AAA_33          AAA domain
     0.0084   15.4   0.0      0.018   14.3   0.0    1.5  1  TIP49           TIP49 P-loop domain
  ------ inclusion threshold ------
       0.02   14.3   0.1      0.057   12.8   0.1    1.7  1  Mg_chelatase    Magnesium chelatase, subunit ChlI
      0.023   15.0   0.0       0.24   11.8   0.0    2.4  1  EHN             Epoxide hydrolase N terminus
      0.025   15.1   0.0      0.082   13.4   0.0    1.9  1  AAA_18          AAA domain
      0.027   14.4   0.0      0.086   12.8   0.0    1.8  1  Rad17           Rad17 P-loop domain
      0.028   14.4   0.0        0.1   12.5   0.0    2.0  1  NACHT           NACHT domain
      0.036   14.4   0.0      0.083   13.3   0.0    1.6  1  RNA_helicase    RNA helicase
      0.045   13.8   0.0       0.18   11.9   0.0    2.0  1  AAA_14          AAA domain
      0.045   13.1   0.0       0.22   10.9   0.0    2.1  2  TniB            Bacterial TniB protein
      0.057   12.6   0.0        3.7    6.6   0.0    2.4  2  DUF815          Protein of unknown function (DUF815)
      0.068   12.1   0.0       0.37    9.7   0.0    1.9  2  AAA_PrkA        PrkA AAA domain
      0.074   13.6   0.0        0.4   11.2   0.0    2.3  1  ABC_tran        ABC transporter
      0.081   12.6   0.0       0.19   11.4   0.0    1.6  1  AAA_24          AAA domain
      0.083   12.5   0.0       0.18   11.3   0.0    1.5  1  AAA_25          AAA domain
      0.084   12.4   0.0       0.16   11.4   0.0    1.4  1  AAA_7           P-loop containing dynein motor region
       0.09   13.1   0.0       0.24   11.7   0.0    1.6  1  AAA_19          AAA domain
       0.11   11.7   0.0       0.22   10.8   0.0    1.4  1  Zeta_toxin      Zeta toxin
       0.14   12.2   0.0       0.29   11.2   0.0    1.5  1  TsaE            Threonylcarbamoyl adenosine biosynthesis prot
       0.15   11.2   0.0       0.29   10.3   0.0    1.4  1  NB-ARC          NB-ARC domain
       0.26   11.7   0.0       0.26   11.7   0.0    2.9  1  AAA_23          AAA domain
       0.74    9.6   3.9       0.29   10.9   0.1    2.0  2  AAA_11          AAA domain


Domain annotation for each model (and alignments):
>> Lon_C  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.0   0.2   1.5e-70   8.2e-68       2     192 ..     704     900 ..     703     901 .] 0.94

  Alignments for each domain:
  == domain 1  score: 228.0 bits;  conditional E-value: 1.5e-70
                 E-TTTTHHHH-S-SS--SSSSS--BSSEEEEEEEETTE..EEEEEEEEEEESS-S-EEEEES--HHHHHHHHHHHHHHTSS-GGGSS....-SS-TTT- CS
       Lon_C   2 vtakeleellGkkrfrseeaekedqvGvvtGlawtevG..GdlltieavllpgkgklkltGklgdvmkesaqaalsyvrsraeelgi....dkevfekk 94 
                 v+ ++lee+lG ++f++e aek+++ G+vtGl+  + G  G++l+ie++ +pg+g+++ltGklgdv+kes+ +als+v++++ +lg+    ++++ +++
  KKY18699.1 704 VSLEDLEEILGIEKFDEEIAEKRSRPGIVTGLVAYSSGgqGSILFIEVADMPGSGRVQLTGKLGDVLKESVGVALSWVKAHSYDLGLahdpNEDIIKNR 802
                 56689**************************97766662557*****************************************99873322467999** PP

                 EEEEEE-S-B-GGGGGGGHHHHHHHHHHHHTS--B-TTBEE--EE-TT-BEE--S-HHHHHHHHHHTT-SBEEEEGGGGGGTTTS-HHHHTS-B--EE CS
       Lon_C  95 dihihvPeGavPkdGPsaGvtlatalvslltgkkvrkdvamtGeitLrGrvlpiGGlkekllaakragikkvilPkenekdlediPeevreeleiilv 192
                 +ih+h P+Ga+PkdGPsaG++ + al+sl++g++v  ++amtGe++LrGrvlp+GG+kekl++a+rag++ v+lP++n+kd++d+P+ev+++l+i+ v
  KKY18699.1 803 NIHVHCPSGAIPKDGPSAGLAHTIALISLFSGRSVPPQLAMTGEVSLRGRVLPVGGIKEKLIGAHRAGVSMVLLPEANRKDVKDVPQEVKDGLQIVHV 900
                 ***********************************************************************************************987 PP

>> LON_substr_bdg  ATP-dependent protease La (LON) substrate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.0   6.3e-29   3.4e-26       4     207 ..      10     253 ..       7     254 .. 0.81

  Alignments for each domain:
  == domain 1  score: 92.4 bits;  conditional E-value: 6.3e-29
  LON_substr_bdg   4 llpldnkv.lfPgitlpltvs.rpksiaaierll......dk.dkp.yigvflv.....k.....................esqkdaide.esis 61 
                     llpl +   l+Pg tl++ +  rp +  ++++l       ++ ++p  ig++ +     +                     e+      e ++++
      KKY18699.1  10 LLPLARDAvLLPGCTLRIPIAnRPEVPLLLSALFskaansRSpSTPaIIGCVPLnssllSadgkqlldsqdgesnlqsdrrEILP----EnATKD 100
                     677755554**********998999977777777999988555888889999998766515677888889999988655553333....236899 PP

  LON_substr_bdg  62 elysvGtvarIvqilrlddgrikvvlegleRvkikklekekeegylvaeveiiedd.s..epedsdslqkelkalvqeiiekikk.....s.lar 147
                     +l+++Gt a+Iv+++ +++ +  +v+eg++R+ i+++  ++++++++ae   ++d  +  ++ d+ s +++lk+  +e+++ ++      s    
      KKY18699.1 101 DLFNYGTAAKIVGVQGRPSSEPYLVVEGIRRFTIVNI--VQQKPFFEAEAAFHDDEvPdlKDRDFRSSFSQLKQSSRELLTLLRItslfrSpSSG 193
                     *************************************..77*********9996654278******************99999954333313334 PP

  LON_substr_bdg 148 ellkllleielllkyedlenpyrLadlvaailpfsneekqelLeeldvedRlkkvlelLk 207
                     ++    +++e    +++l + ++Lad++++i+++++e+k+++L  +dv++Rl++vl+lL 
      KKY18699.1 194 ISPIIARRFEVFIAKRELSQAGALADFMGNIIDAKFEDKLQILGSFDVKERLARVLDLLH 253
                     44555556677789999*****************************************96 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       7.4     4e+03      82     120 ..     245     282 ..     235     289 .. 0.77
   2 !   82.4   0.0   6.8e-26   3.7e-23       1     128 [.     479     618 ..     479     622 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 7.4
                 HHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHH CS
         AAA  82 eervvnqLlteldgvkkkeskvivigatnrpdkldpall 120
                   rv++ L +++++ k +  k++ i  t++ + + + + 
  KKY18699.1 245 LARVLDLLHKQISDIKGN-VKITAISSTKSSNGIGSDIS 282
                 568999999999999996.55999999988887776666 PP

  == domain 2  score: 82.4 bits;  conditional E-value: 6.8e-26
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS.........STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellsk.........yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLl 90 
                 +ll+GppGtGKT+lak++a++lg++f +is+  ++++         yv +++  i   +k++   +   ++++DEid+l +++      ++ +  +++l
  KKY18699.1 479 LLLVGPPGTGKTSLAKSIATSLGRRFHRISLGGVRDEaeirghrrtYVAAMPGLIVSGLKKVGVAN--PVMLLDEIDKLSGNN------FHGDPSAAML 569
                 69*********************************889***********************99887..***********9999......********** PP

                 HHHHHTTTS............SSTEEEEEEESSGGGSTHHHHSTTSSEEE CS
         AAA  91 teldgvkkk............eskvivigatnrpdkldpallrgRfdrki 128
                 ++ld ++++             skv++i+++n+ d+++ +ll +R++ ++
  KKY18699.1 570 EVLDPEQNHsfsdhyvgipidLSKVLFIATANSLDTIPAPLL-DRMETIQ 618
                 *********************999******************.***9876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   9.1e-10   4.9e-07       2     138 .]     479     614 ..     478     614 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 9.1e-10
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------....G-SEEEEESGGG--HHHH.....HHHHHHHHS CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar....egeilvlDEveraesevl.....nsLlsllee 91 
                 +lLvGppGtgK++la+++a  l+r+++ + l     e++++g+r++     +  ++ +v   +       +++lDE+++++ + +     +++l +l+ 
  KKY18699.1 479 LLLVGPPGTGKTSLAKSIATSLGRRFHRISLGGVRDEAEIRGHRRT---YVAAMPGLIVSGLKkvgvANPVMLLDEIDKLSGNNFhgdpsAAMLEVLDP 574
                 79*******************************************7...444445555544445555999********998555423322688888888 PP

                 SEEE..-SSSEEE---......-EEEEEESS--.-TT-TTHHHHTT- CS
       AAA_5  92 rrllleeggelvkaknddllerfrviatanpldrslnelspalrsRf 138
                 ++ +   ++++v+ + d  l+++ +iatan+ld     + ++l++R+
  KKY18699.1 575 EQNH-SFSDHYVGIPID--LSKVLFIATANSLD----TIPAPLLDRM 614
                 8888.556666666664..56699999999999....7777777775 PP

>> ChlI  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   3.9e-09   2.1e-06      36     121 .]     795     880 ..     749     880 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 3.9e-09
        ChlI  36 sgfefpakkitvnLaPadlkkeGsafDLpiAigilaaleqieaeeetlflGeLsldGslrpvkgvlpialaakkegikkvivpken 121
                 ++  +++++i v   +  ++k+G++  L+  i++++  +  ++  ++ + Ge+sl G++ pv g+ + ++ a+++g++ v++p++n
  KKY18699.1 795 NEDIIKNRNIHVHCPSGAIPKDGPSAGLAHTIALISLFSGRSVPPQLAMTGEVSLRGRVLPVGGIKEKLIGAHRAGVSMVLLPEAN 880
                 555678889999999999*****************************************************************988 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.1e-08     6e-06      15      52 ..     466     508 ..     458     555 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.1e-08
      AAA_16  15 ale.rvrsgrpelvllsGesGvGKsslvrellralekd....g 52 
                 +l+ r r++ ++++ll+G++G+GK+sl+++++++l ++     
  KKY18699.1 466 VLRsRRRADKSPILLLVGPPGTGKTSLAKSIATSLGRRfhriS 508
                 34426677777************************99943330 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.9e-07   0.00011      19      66 ..     462     509 ..     454     561 .. 0.87
   2 ?   -1.3   0.0         3   1.7e+03     126     155 ..     587     616 ..     576     619 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.9e-07
      RuvB_N  19 lkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklkitsg 66 
                  k+ +  +++r ++   +ll+GpPG Gkt+lak ia+ lg +++  s 
  KKY18699.1 462 TKLHVLRSRRRADKSPILLLVGPPGTGKTSLAKSIATSLGRRFHRISL 509
                 56677788999999999***********************99987764 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3
      RuvB_N 126 ikldlpkftlvgattragllssPlrdrfgi 155
                 i +dl+k  +++++    ++ +Pl dr+  
  KKY18699.1 587 IPIDLSKVLFIATANSLDTIPAPLLDRMET 616
                 678999999999999999*********876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   9.8e-06    0.0053       5      34 ..     476     505 ..     471     595 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 9.8e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeak 34 
                   il+++G++GtGKT l++ ++ +l ++ +
  KKY18699.1 476 SPILLLVGPPGTGKTSLAKSIATSLGRRFH 505
                 6799******************99965544 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.6e-06   0.00088       2     114 ..     479     604 ..     478     613 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.6e-06
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGte.vfeeke...kefefkkGpvfanllladeinrappkt.....qsalleame.erq 90 
                 +ll g PG++kt l+k++a++l+ +f+ri +      ++i G++  + ++        +kk  v + ++l dei++ +         +a+le+++ e++
  KKY18699.1 479 LLLVGPPGTGKTSLAKSIATSLGRRFHRISLGGVRDEAEIRGHRrTYVAAMpglIVSGLKKVGVANPVMLLDEIDKLSGNNfhgdpSAAMLEVLDpEQN 577
                 58999**************************99999999999861344444333344578889999999999998866543222227899999874555 PP

       AAA_3  91 vtvegethklp...epflvlatqnPie 114
                  +++++   +p   ++ l +at n ++
  KKY18699.1 578 HSFSDHYVGIPidlSKVLFIATANSLD 604
                 566655554442223455677777665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.1e-06    0.0017      29      79 ..     458     508 ..     432     571 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3.1e-06
   IstB_IS21  29 sldkrkvkeLatlsfiekkenivllGpsGvGKshlaialgveavraglsvl 79 
                 +++++k++ L++    +k+  ++l+Gp+G+GK+ la +++++  r+ ++++
  KKY18699.1 458 DAKETKLHVLRSRRRADKSPILLLVGPPGTGKTSLAKSIATSLGRRFHRIS 508
                 344556678999999999999*******************99888777765 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   8.6e-06    0.0047       6     129 ..     479     602 ..     474     638 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 8.6e-06
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-H..HHHTTS....EEEEETGGG-------------HHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyv..gaeegG....ivllDEidKihpkessgadvSregVqrd 98 
                 +ll+gp g+Gkt lak++a  l     +++ r+    +  e e++      + a pg +  g ++ G    + llDEidK +  ++   d S      +
  KKY18699.1 479 LLLVGPPGTGKTSLAKSIATSLG----RRFHRISLGGVRDEAEIRGHRRTYVAAMPGLIvsGLKKVGvanpVMLLDEIDKLSG-NNFHGDPS-----AA 567
                 6899******************9....68888888888887777777777777777765224555558899************.55555555.....68 PP

                 HHHHHH--EE-...---.---EE-TT-EEEEEE-- CS
       AAA_2  99 LLqileggtlt...dkq.grkvdtknilfImtgaf 129
                 +L +l+  +     d++ g ++d +++lfI+t + 
  KKY18699.1 568 MLEVLDPEQNHsfsDHYvGIPIDLSKVLFIATANS 602
                 9999995543334466626*************985 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.8e-05     0.015       2      29 ..     479     508 ..     478     527 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.8e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avlls 29 
                 +llvG+pG+GK+ la++++  lg  + ++s
  KKY18699.1 479 LLLVGPPGTGKTSLAKSIATSLGrrFHRIS 508
                 789****************99998777776 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.3e-05     0.018      52      82 ..     478     508 ..     455     513 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  52 avLlaGpsgtGktalaiaiskelgedvpfva 82 
                  +Ll+Gp+gtGkt+la +i+ +lg+  + ++
  KKY18699.1 478 ILLLVGPPGTGKTSLAKSIATSLGRRFHRIS 508
                 4899********************8876555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1    0.0001     0.057      25      46 ..     479     500 ..     475     510 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.0001
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsll 46 
                   lllvGppG+GKt lak +++ l
    KKY18699.1 479 LLLVGPPGTGKTSLAKSIATSL 500
                   89**************998766 PP

>> EHN  Epoxide hydrolase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00044      0.24      10     104 ..     320     487 ..     316     489 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00044
         EHN  10 qeelddlkkrleltrlpeeeaeeee............eweeGvtkdelkelldy.W........................................... 52 
                 ++eld+lk++l+++rlp e+++  +            + e+ vt+++l++l++  W                                           
  KKY18699.1 320 SNELDELKQKLDEARLPPEAQKVVDrelkrlrkmnpaQAEYNVTRSYLENLAEIpWtkvtqdqlgadtlkrarkqldddhyglerikkrlleylavlkl 418
                 7899**********88443333222345666666666666788888888888753799999999*******9999999999999999999999999999 PP

         EHN  53 ................keeydWraeearlnsfpqfktei..dgldihFihlrsakpdaiPllllhGWPgs 104
                                 +e  + r++++     p+ +t+i  +++++h ++ r  ++d  P+lll G Pg+
  KKY18699.1 419 kqtvnadidvqvakltTELTQQRETQNDQTLPPEATTDIdaKETKLHVLRSRR-RADKSPILLLVGPPGT 487
                 998888888888776433234555555555668899999544699**999995.89999*****999986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   0.00015     0.082       2      24 ..     480     502 ..     479     527 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00015
      AAA_18   2 lltGtpGvGKttlakeLskrlgf 24 
                 ll G+pG+GKt+lak ++ +lg 
  KKY18699.1 480 LLVGPPGTGKTSLAKSIATSLGR 502
                 689**************998843 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00016     0.086      39      74 ..     466     505 ..     454     519 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00016
       Rad17  39 vLesrkkr....iLLisGPsGCgkstvvkvLskelgiklr 74 
                 vL sr++     iLL+ GP+G gk+   k ++  lg +++
  KKY18699.1 466 VLRSRRRAdkspILLLVGPPGTGKTSLAKSIATSLGRRFH 505
                 444443334468*******************999998765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00019       0.1       3      26 ..     479     502 ..     477     505 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00019
                 EEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   3 vilqGeaGsGKTtLlqklalawae 26 
                 ++l G++G GKT L++++a+ + +
  KKY18699.1 479 LLLVGPPGTGKTSLAKSIATSLGR 502
                 689****************98865 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   0.00015     0.083       2      26 ..     480     504 ..     479     552 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00015
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl 26 
                   +l+Gp+g+GK++lak++a++l +++
    KKY18699.1 480 LLVGPPGTGKTSLAKSIATSLGRRF 504
                   799****************999877 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00032      0.18       2      76 ..     476     555 ..     475     568 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00032
      AAA_14   2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkla.dpe.....kllelileklke..ekktylflDEiqev 76 
                 ++il+++G+  +GKT l+k ++ +l    +++  i+l   rd+++    +      ++ li + lk+    + +++lDEi ++
  KKY18699.1 476 SPILLLVGPPGTGKTSLAKSIATSLG---RRFHRISLGGVRDEAEIrGHRrtyvaAMPGLIVSGLKKvgVANPVMLLDEIDKL 555
                 5799******************9888...999999998888844221121223444555555554446667889*****9887 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0004      0.22      19      56 ..     460     497 ..     451     506 .. 0.86
   2 ?   -2.4   0.0       4.7   2.6e+03      81     115 ..     647     681 ..     609     686 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0004
        TniB  19 ilerLeeLleypkrkrmpnlllvGdsnnGKtmivekFa 56 
                   ++L+ L ++ ++++ p lllvG++ +GKt+++++ a
  KKY18699.1 460 KETKLHVLRSRRRADKSPILLLVGPPGTGKTSLAKSIA 497
                 5678999999999********************98765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.7
        TniB  81 pdekrlyaaiLealgaplkararvskleqqvlrll 115
                  de ++ +++L+++ + +  +  v +le+++ +++
  KKY18699.1 647 QDEVQFSDEVLDKIITAYTRESGVRNLEREIGSVC 681
                 46667777777777777777777777776666555 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0069       3.7      55      79 ..     478     502 ..     443     509 .. 0.80
   2 ?    3.2   0.0     0.076        41     151     180 ..     632     660 ..     621     663 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0069
      DUF815  55 nvLLwGarGtGKSslvkallneyae 79 
                  +LL+G  GtGK sl k++ +++ +
  KKY18699.1 478 ILLLVGPPGTGKTSLAKSIATSLGR 502
                 579***************9988765 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.076
      DUF815 151 rRhLlpeklsdneeleeeeihaseaveekl 180
                 rRhL+p++++ n   +++e++ s+ v +k+
  KKY18699.1 632 RRHLVPKQIRSNGL-DQDEVQFSDEVLDKI 660
                 99999999999776.99*******999987 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.95   5.2e+02      57      78 ..     393     414 ..     378     445 .. 0.70
   2 ?    9.7   0.0   0.00067      0.37      82     112 ..     470     500 ..     462     510 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.95
    AAA_PrkA  57 pafeedffGleetiekiveyfr 78 
                 + +++d +Gle   ++++ey+ 
  KKY18699.1 393 KQLDDDHYGLERIKKRLLEYLA 414
                 4456677777777777777765 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00067
    AAA_PrkA  82 qrleerkqilyllGPvggGksslverlkkll 112
                 +r  ++  il+l+GP g+Gk+sl++++ + l
  KKY18699.1 470 RRRADKSPILLLVGPPGTGKTSLAKSIATSL 500
                 56667888*****************998766 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00073       0.4      11      34 ..     476     499 ..     471     526 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00073
                 TSEEEEEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  11 gekvaivGenGaGKStLlkllagl 34 
                 + ++ +vG+ G+GK++L+k +a  
  KKY18699.1 476 SPILLLVGPPGTGKTSLAKSIATS 499
                 56789****************976 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00036      0.19       4      22 ..     478     496 ..     475     507 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00036
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                  +l++Gp+g+GKT+lak++
  KKY18699.1 478 ILLLVGPPGTGKTSLAKSI 496
                 5799************997 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00033      0.18      14      56 ..     456     499 ..     443     507 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00033
      AAA_25  14 dlaapppprrwlvk.gllpagelallaGapgtGKttlaldlala 56 
                 d++a+ +++  l   +   +  + ll+G+pgtGKt la ++a +
  KKY18699.1 456 DIDAKETKLHVLRSrRRADKSPILLLVGPPGTGKTSLAKSIATS 499
                 55555555555555234445556789************999876 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0003      0.16      36      58 ..     479     501 ..     460     509 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0003
       AAA_7  36 vllvGptGtGKtviikdllkkld 58 
                 +llvGp GtGKt+++k++ ++l 
  KKY18699.1 479 LLLVGPPGTGKTSLAKSIATSLG 501
                 689*************9988876 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00044      0.24       9      36 ..     475     502 ..     469     517 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00044
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallve 36 
                 k+++ll++++pGtGKT + k i + l +
  KKY18699.1 475 KSPILLLVGPPGTGKTSLAKSIATSLGR 502
                 678999***********99998877755 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00041      0.22      13      45 ..     474     503 ..     464     517 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00041
  Zeta_toxin  13 qerPklillgGqpGAGKselaellkdelerqgn 45 
                 +++P ++ll+G pG GK++la+ ++++l+  ++
  KKY18699.1 474 DKSP-ILLLVGPPGTGKTSLAKSIATSLG--RR 503
                 3555.567889***************995..43 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00053      0.29      19      45 ..     476     502 ..     452     508 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00053
                 TEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgv 45 
                 + ++lL G+ G+GKT l++++a +lg 
  KKY18699.1 476 SPILLLVGPPGTGKTSLAKSIATSLGR 502
                 34699******************9986 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00053      0.29      20      52 ..     476     505 ..     460     517 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00053
                 SEEEEEEESTTSSHHHHHHHHCCSHCCCCCCBT CS
      NB-ARC  20 slvvalvGmgGvGKttlakqilnksdevegrFd 52 
                 s ++ lvG +G GKt lak+i  +   + +rF 
  KKY18699.1 476 SPILLLVGPPGTGKTSLAKSIATS---LGRRFH 505
                 45999****************987...666665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00048      0.26      19      52 ..     476     509 ..     455     528 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00048
      AAA_23  19 kgltlItGpNGaGKTTildAiklaLygetprlsr 52 
                 +++ l++Gp G+GKT++   i   L+ +++r s 
  KKY18699.1 476 SPILLLVGPPGTGKTSLAKSIATSLGRRFHRISL 509
                 6999**********************99988765 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   1.3       2.2   1.2e+03     121     148 ..     397     445 ..     243     478 .. 0.57
   2 ?   10.9   0.1   0.00053      0.29      15      41 ..     474     500 ..     458     529 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.2
      AAA_11 121 e.....................kaqlakeiskeleklakelrafeeeee 148
                 +                     k++ + +i+ + +kl +el ++ e+++
  KKY18699.1 397 DdhyglerikkrlleylavlklKQTVNADIDVQVAKLTTELTQQRETQN 445
                 1222333333333333333333333333344444444444433333333 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00053
      AAA_11  15 seseitliqGPPGtgKTktivellsql 41 
                  +s i l+ GPPGtgKT+   ++  +l
  KKY18699.1 474 DKSPILLLVGPPGTGKTSLAKSIATSL 500
                 344489***********8877777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (901 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                       108  (0.00602376); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.47
# Mc/sec: 5749.76
//
Query:       KKY18700.1  [L=224]
Description: putative extracellular conserved serine-rich protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.8e-16   58.3   4.5    9.8e-16   58.3   4.5    2.6  2  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc
  ------ inclusion threshold ------
        1.4    8.5   3.7        1.7    8.2   3.7    1.3  1  SCHIP-1       Schwannomin-interacting protein 1
        4.7    7.3  39.2        6.3    6.8  39.2    1.1  1  PARM          PARM
        8.6    4.8   9.8         11    4.4   9.8    1.2  1  Macoilin      Macoilin family


Domain annotation for each model (and alignments):
>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   4.5   2.2e-19   9.8e-16       1      93 []      21     114 ..      21     114 .. 0.97
   2 ?   -2.5   5.7         2   9.1e+03      37      65 ..     119     146 ..     115     153 .. 0.70

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 2.2e-19
  GPI-anchored   1 tsPssgevvtagkpvtitWkdsgtdpgtvtlvLcagssnnlksvktiasgiknsdgsytwtvpaslesggaYflqiv.sesne.giynySdrFti 93 
                   tsP+  ++++ g+++ itW++++tdp+t+t++L++ +s +++  +tias++k+sd +yt++  +  ++g++++++++ ++s++ gi+++S  F++
    KKY18700.1  21 TSPAPLSSYDIGSSIPITWTSVNTDPSTITIQLVNFAS-YPTVTETIASDVKTSDDKYTIKAGSISKTGTGFQINFIgTTSSNsGILAQSGDFNL 114
                   799999********************************.***********************99999999********999999*********86 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2
  GPI-anchored  37 ssnnlksvktiasgiknsdgsytwtvpas 65 
                   ss++ +s +t  s+i++s++s t +++ s
    KKY18700.1 119 SSTTSSSTTTTSSSISTSSKSSTSSPS-S 146
                   456677778888999999777766664.3 PP

>> SCHIP-1  Schwannomin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.7   0.00038       1.7      38      93 ..      83     140 ..      64     193 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00038
     SCHIP-1  38 srlqsGvnLqiCfvnesssdkdsdaedse.tetsldtPksd.psskqssslsdrklee 93 
                 s  ++G  +qi f+  +ss+  + a+  + + ts+++ +++ +++ +sss+s  + ++
  KKY18700.1  83 SISKTGTGFQINFIGTTSSNSGILAQSGDfNLTSSSSSTTSsSTTTTSSSISTSSKSS 140
                 45689*****************999998855555444444313444444444433222 PP

>> PARM  PARM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  39.2    0.0014       6.3      22     194 ..      33     195 ..      13     209 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0014
        PARM  22 tpstatwtsspqntaavtasptsgtssnsvlpvtasaetstlpknvsvepreeeatspaskwegtetdpssvklsstssgveltptpeehssgtpeasv 120
                 ++   twts + +++++t    + +s  +v ++  +++  t   + +++++  + t +  + +   t++s+ ++ + s++ +lt+     ss+t+ +s 
  KKY18700.1  33 SSIPITWTSVNTDPSTITIQLVNFASYPTVTETI-ASDVKTSDDKYTIKAGSISKTGTGFQINFIGTTSSNSGILAQSGDFNLTSS----SSSTTSSS- 125
                 4445578888888866555555555444444433.344444455567777777777777777777777777788888888888876....33333333. PP

        PARM 121 patgsqspaesptltSpqapasspsslstslppevssasvstnhssaetstkptgapttpespt...eehssaetpt 194
                      ++++ s++ tS+++++sspsslst+      s+ +s +  + +tst +t+++t ++s       +ssa +  
  KKY18700.1 126 -----TTTTSSSISTSSKSSTSSPSSLSTT--LATLSSTLSGSPYTNATSTTTTSGSTGTGSAGvstTGTSSASASA 195
                 .....3334456899**************9..344556677777777777777777776666541103333333333 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   9.8    0.0024        11     317     361 ..     115     164 ..      38     216 .. 0.46

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0024
    Macoilin 317 kskssssssssnknskkasagsagssnssskkhsessksvtsss.....s 361
                 +s+sss++sss+ +++++ ++s++ss+ss+ ++s++    +s+      +
  KKY18700.1 115 TSSSSSTTSSSTTTTSSSISTSSKSSTSSPSSLSTTLATLSSTLsgspyT 164
                 11111112222222222222233333333333333322222211111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1340  (0.0747392); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.36s 00:00:01.04 Elapsed: 00:00:00.49
# Mc/sec: 1361.21
//
Query:       KKY18701.1  [L=360]
Description: putative myb dna-binding domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-16   59.5   0.1    8.6e-15   55.2   0.1    2.1  1  Abhydrolase_3  alpha/beta hydrolase fold
    1.1e-10   41.4   0.0      1e-08   34.9   0.0    2.1  2  Peptidase_S9   Prolyl oligopeptidase family
    7.2e-05   21.9   0.0    0.00011   21.2   0.0    1.3  1  COesterase     Carboxylesterase family
  ------ inclusion threshold ------
      0.011   15.6   0.1      0.047   13.5   0.0    1.9  2  Abhydrolase_2  Phospholipase/Carboxylesterase
      0.048   13.4   0.0       0.11   12.2   0.0    1.6  2  Abhydrolase_5  Alpha/beta hydrolase family
       0.09   12.3   0.0       0.25   10.9   0.0    1.7  2  DLH            Dienelactone hydrolase family
       0.13   12.4   0.0       0.27   11.4   0.0    1.4  1  Abhydrolase_4  TAP-like protein
       0.18   11.0   0.3        1.5    8.0   0.0    2.1  2  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.1   3.8e-18   8.6e-15       2     210 ..      44     317 ..      43     318 .. 0.78

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 3.8e-18
                    EEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTTS-.TTHHHHHHHHHHHHHHHTH..........HHHTETTCEEEEEEETHHHHHHH CS
  Abhydrolase_3   2 vyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPehp.fPaavedalaalrwlaeqa..........welgadpsrivlaGdSaGGnlaa 86 
                    + fHGG+f+lg+++++ +l+ + +   +  vv+++ rl P+   +  ++ d+ + l w+++ +            +++ + +i+ +G+S GG++a+
     KKY18701.1  44 IIFHGGAFMLGHSRMNSTLLINECLSRKWLVVAPNHRLCPQVNiLDGPITDCRDLLTWIHAGHldhaltshshPGIRVSKPQIIAMGTSSGGTMAH 139
                    67***************************************7725789*************99999999886336678899*************** PP

                    HHHHHHHHTT---.......................................EEEEE.EESE..-SST.....SSTTSHHHHHCHHTTTSSSSCHH CS
  Abhydrolase_3  87 avalrardegepk.......................................vagqv.liyP..vtdl.....ertesesikkaeeladgplltra 135
                     +a  + +  +p+                                       ++ q+   +P   td+     +      + + ++ +d+p lt++
     KKY18701.1 140 SLAWNWDNGMTPSppiaildfygakdfahpfwsqpltssgfgfptpppltpdIESQIyTAHPipTTDTislegQ------TPTPSSSSDRPHLTPR 229
                    ***999998677799***********************************995555514566766666433321......2223344666777766 PP

                    HHHHHHHHHSS.GGGGGST........TTSGGGC.S-.SST---EEEEEETT-TTH..HHHHHHHHHHHHTT--EEEEEETTEETTGG CS
  Abhydrolase_3 136 aldlfwrlylp.eadrddp........lasplla.ed.lsglpptlvvvaefDplr..degeayaerlraagvevelieyegmvHgfa 210
                    ++ +f +++ +     + p        ++ p+   ++    +ppt ++ ++ D+    + + a++++l+  g ++++ie+eg+ H f+
     KKY18701.1 230 QIFAFNQIVSGtVIRTNYPpgspsdpsTFRPIDPlHNlSPSYPPTCIIHGTADTTVpiEHSHAVHQELARLGARTKMIEVEGQNHTFL 317
                    666666665542222223333333334555553332324459******999998762278999***********************96 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.012        26      61      80 ..     121     140 ..     113     148 .. 0.85
   2 !   34.9   0.0   4.6e-12     1e-08     129     189 ..     256     317 ..     236     335 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.012
                   --GGGEEEEEETHHHHHHHH CS
  Peptidase_S9  61 vdserlaitGgSyGGyltga 80 
                   v++ +++++G+S GG+++  
    KKY18701.1 121 VSKPQIIAMGTSSGGTMAHS 140
                   567789***********876 PP

  == domain 2  score: 34.9 bits;  conditional E-value: 4.6e-12
                   HHHHHH-CGGG--.---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTT CS
  Peptidase_S9 129 kelspyspldnvk.aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvg 189
                   +++ p++pl+n+   ypp+++ihG+aD+ vp++++  + ++L + g  +++    +++H + 
    KKY18701.1 256 STFRPIDPLHNLSpSYPPTCIIHGTADTTVPIEHSHAVHQELARLGARTKMIEVEGQNHTFL 317
                   577899*****999*********************************************654 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   5.1e-08   0.00011      83     145 ..      13      82 ..       1      84 [. 0.75

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 5.1e-08
                 BES--.-EEEEEEESSS....SSTTSSEEEEEEE--STTTS-BGCGS-THHHHHHH...TSEEEEE----H CS
  COesterase  83 vsEDC.LyLnvytPkek....keakkklPVlVwihGggfqtgsaseydgsaLaaeg...nvivVtinYRlG 145
                 + +DC  + nvy+P+++      ++k+lP  +++hGg+f+ g +++ + + L++e    + +vV+ n Rl 
  KKY18701.1  13 TIDDCvITTNVYVPTQAttsdDVSSKELPTAIIFHGGAFMLGHSRM-NSTLLINEClsrKWLVVAPNHRLC 82 
                 668994578*****99988876678889*************99866.44444444345589********95 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.85   1.9e+03     102     121 ..     121     140 ..     107     166 .. 0.82
   2 ?   13.5   0.0   2.1e-05     0.047     154     201 ..     269     316 ..     262     322 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.85
                    --GGGEEEEEETHHHHHHHH CS
  Abhydrolase_2 102 ipssriiigGFSqGaalaly 121
                    + + +ii +G S G+ +a  
     KKY18701.1 121 VSKPQIIAMGTSSGGTMAHS 140
                    56678999999999999855 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.1e-05
                    GGG-EEEEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEEEETT--SS- CS
  Abhydrolase_2 154 tkklpilqiHgeeDpvvplalgkaakevlkkllkkvelksyeglaHsi 201
                    + + p + iHg+ D +vp+ ++ a+++ l  l  + ++  +eg  H  
     KKY18701.1 269 PSYPPTCIIHGTADTTVPIEHSHAVHQELARLGARTKMIEVEGQNHTF 316
                    5566999************************************99975 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         4   9.1e+03      60      75 ..     127     142 ..     121     149 .. 0.75
   2 ?   12.2   0.0     5e-05      0.11     102     146 ..     273     320 ..     259     330 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4
  Abhydrolase_5  60 vvgGhslGGvvasrfa 75 
                    +  G s GG +a  +a
     KKY18701.1 127 IAMGTSSGGTMAHSLA 142
                    5568999999998776 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 5e-05
  Abhydrolase_5 102 kvlsivgteDgvlnvkslekakk...flpkdtkvvsieGgnhagfGsY 146
                    ++  i gt D  +++++ +  ++   +l   tk++++eG nh+  G+ 
     KKY18701.1 273 PTCIIHGTADTTVPIEHSHAVHQelaRLGARTKMIEVEGQNHTFLGAL 320
                    5677999****99998876666611156679************99975 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.7   3.8e+03      96     116 ..     122     142 ..     114     148 .. 0.82
   2 ?   10.9   0.0   0.00011      0.25     135     200 ..     262     327 ..     239     339 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.7
         DLH  96 stkkvgvvGfCmGGalallla 116
                 s+ ++ ++G   GG++a  la
  KKY18701.1 122 SKPQIIAMGTSSGGTMAHSLA 142
                 556789999999***999887 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00011
         DLH 135 keleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsresynee 200
                  +l++   +  p  +++g++D+ +p ++ + ++++l+  ++  ++   +g  H F+ +  e+ +ee
  KKY18701.1 262 DPLHNLSPSYPPTCIIHGTADTTVPIEHSHAVHQELARLGARTKMIEVEGQNHTFLGALVEGRDEE 327
                 56666666677999*****************************************98777666655 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012      0.27      31      76 ..     268     317 ..     254     322 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
  Abhydrolase_4  31 akgaapvLllqnerDpaTPyegakklakalgg..a..vlvtvegeGHgal 76 
                     ++ +p+ ++ ++ D ++P e   +++++l +  a  +++ veg+ H++l
     KKY18701.1 268 SPSYPPTCIIHGTADTTVPIEHSHAVHQELARlgArtKMIEVEGQNHTFL 317
                    34669999**********************99853779*********986 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.13   2.9e+02      75      94 ..     123     142 ..     106     150 .. 0.81
   2 ?    8.0   0.0   0.00069       1.5     193     227 ..     273     307 ..     263     318 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.13
  Hydrolase_4  75 elplfllGhSmGGliallyl 94 
                  + +++ +G S GG++a +++
   KKY18701.1 123 KPQIIAMGTSSGGTMAHSLA 142
                  448999*********98776 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00069
  Hydrolase_4 193 PllllhGeaDkvvdpeasrelyerlgskdktlkly 227
                  P+ ++hG+aD+ v+ e s++++++l++   + k++
   KKY18701.1 273 PTCIIHGTADTTVPIEHSHAVHQELARLGARTKMI 307
                  99****************99999998876665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 2171.96
//
Query:       KKY18702.1  [L=192]
Description: putative cupin domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0015   18.2   0.2     0.0052   16.5   0.0    1.9  2  Cupin_2   Cupin domain


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2      0.13   2.2e+03      10      19 ..       6      15 ..       1      21 [. 0.63
   2 !   16.5   0.0   2.9e-07    0.0052      18      56 ..      92     130 ..      84     141 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.13
                EEEEECSSSE CS
     Cupin_2 10 sapshrHpge 19
                ++  h Hp++
  KKY18702.1  6 QFDVHFHPHH 15
                4556666665 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 2.9e-07
                 SEEEEEEEEESEEEEE.ECTEEEEEETTEEEEE-TT-EEE CS
     Cupin_2  18 gedeffyVleGegelt.vdgeeveleaGdsvyfpagtpHr 56 
                  + ++f V eG++el+  dg    + +G+s+++pag+   
  KKY18702.1  92 VS-HCFCVNEGTVELKlGDGSSELVIPGESAFVPAGVSFS 130
                 55.89***********88899***************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1324.33
//
Query:       KKY18703.1  [L=1960]
Description: putative alpha-glucan [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-20   74.1   1.2    7.8e-19   68.4   1.2    2.9  2  Alpha-amylase    Alpha amylase, catalytic domain
    2.9e-14   53.4   0.0      5e-14   52.6   0.0    1.3  1  Glyco_transf_5   Starch synthase catalytic domain
    5.2e-07   29.4   0.0      1e-06   28.4   0.0    1.4  1  Glycos_transf_1  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   1.2   1.3e-22   7.8e-19       1     218 [.      37     288 ..      37     334 .. 0.70
   2 ?    1.8   0.0     0.023   1.4e+02     286     331 ..     393     434 ..     367     438 .. 0.82

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 1.3e-22
                    --CHHHHCTCCCCCCCT-SCEEE-..B-CE-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHSTTSG CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwls..PifkspqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkkkgep 94 
                    GD kG+ ++LdY++++G+++i+l+  P+ + p +  gY   d+t +d + G  +d+  L++++h+++++v+lD     ++d  +  +++++++++ 
     KKY18703.1  37 GDVKGMRKHLDYIQGMGIKGIYLTgsPFINRPWSGDGYGPLDFTLLDHHHGVIQDWRDLVDEIHSRNMYVLLDNTLGTMGDLLSF-ENYVNSSAPF 131
                    9**********************555*******************************************************9995.5555544444 PP

                    ..GGCCC-E......................................ESS-STTC-...TTTTCS..CEECTTTTCEEESSS-TTS-BB-TTTCCC CS
  Alpha-amylase  95 ..krdyyiwkegk................................eekeppnnwks...lfdgsa..weydekaqeyylhlflkklpdLnteneev 151
                      ++    wk+ +                                 +k++  +++s   +f+  +    y  ++ +  l +f++ ++ L     +v
     KKY18703.1 132 twNEYDVLWKSDRryhdfsikndvnsscefprmweetghpvgqdiLSKQQAGCKESdfdAFGDMKgvGAYPAWRSQ--LSKFASVQDRLRAWAGSV 225
                    3222223344444556666666666777777777666666666663333344444444433333311345667755..99*********8666665 PP

                    C.CCCCCCCCCCCTTT.-SEEEETTCCCTTTCCCCHCCHCCHHHHHHHHHHHTC..CGTT-EEEEE-TT-S CS
  Alpha-amylase 152 r.kelkdvvkfwlekg.idGfRlDvvkhvskvealesngeflheftqalnetva..srkevmtvgEvssda 218
                    + ++l+  + + ++   idGfR+D + +       + ++ef  +++++     +  +++++m+vgE  ++ 
     KKY18703.1 226 VlQKLNHFSCMQIQMLdIDGFRMDKALQTTL----DAHAEF-SNYQKQCA---RnlGKDNFMIVGEAVGEI 288
                    51566665555555445*******8776666....333333.34444444...33389********98865 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.023
                    -TTS--HHHHTTSSTTTTHHHHHHHHHCCCTSSSEEEEETTCCCT- CS
  Alpha-amylase 286 nHDqeRilsrlgddsaeaekklklaaillltlrGvpviYyGeEigm 331
                    n D  R  s  + ++    +++  a+++ l ++G+p+ + GeE+ +
     KKY18703.1 393 NQDVFRWPSLSNGTQ----RQMLGALVISLVMPGIPMLFWGEEQQF 434
                    666667777666666....47777889999*************976 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   8.4e-18     5e-14       2     213 ..    1102    1307 ..    1101    1311 .. 0.75

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 8.4e-18
  Glyco_transf_5    2 ilfvasEv..apl...aktGGLadvvgaLpkaLaklghdvrvilPrygaikeekkeleevaelskaaedevevev....ekvkvaklkkdgvd 85  
                      +l++++E+    +   +k GGL+ ++  + k L ++  +   ++P  g i+   ++          ++++++v+v    ++v+v  +  ++++
      KKY18703.1 1102 VLIATMEYeiEDWnirIKIGGLGVMANLMGKNLGHQ--NLIWVIPCVGGIEYPTDQ----------PGEPMHVTVlgttYSVSVQYHVVRNIT 1182
                      6777877755444668*****************887..589999999999997632..........233333442233467777777779*** PP

  Glyco_transf_5   86 vyfldnpeffdreg..lYgdkgedyednaerfalfsraalelleklgwkpdvihahDWhtalvpallkelykerglfkkiktvftiHNlayqg 176 
                      +++ld+p f ++++  +Y  +  d  + a  ++++++ ++e+++++    d+ h++D+h a++p++l  +         i++++++HN ++qg
      KKY18703.1 1183 YVLLDAPVFRQQTKaePYP-ARMDDLESAIYYSAWNACIAETIKRF-PTIDLYHINDYHGAIAPLYLLPQV--------IPCCLSLHNAEFQG 1265
                      ********99755568**4.46666777888889999999999993.379*****************9988........************** PP

  Glyco_transf_5  177 rfp......kdel.aalglpaedfekldglefygkvnflkagiv 213 
                       +p       de+ + ++l+++     d ++f + +n+l+ag  
      KKY18703.1 1266 LWPirnpteLDEIsRVFNLDKQII--QDYVQFGEIFNLLHAGAS 1307
                      ***987555233324467774443..455666667788877765 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.7e-10     1e-06      11     112 ..    1392    1495 ..    1383    1514 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.7e-10
                       TTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.......STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEE CS
  Glycos_transf_1   11 knekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaG......ngeeekelkklaeelelsdnviflgevsredleellknadif 96  
                        + + +++++vgr + +Kgvd + ++f++l ++ ++nv+l+ +G      ++  ++ lk      +  ++v    e   +  + +++ a  +
       KKY18703.1 1392 VDPNAELFVFVGRWSMQKGVDAIADVFPSLLEK-HDNVQLICIGpvidlyGK--FAALKLAKLMEKYPERVYSKPEFT-QLPPYIFSGAEFA 1479
                       5677899*************************9.************986433..344444444444455666666665.567777778**** PP

                       EEEESSBSS-HHHHHH CS
  Glycos_transf_1   97 vlpsisEgfGivllEA 112 
                       ++ps+ E+fG+v++E 
       KKY18703.1 1480 LIPSRDEPFGLVAVEF 1495
                       **************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1960 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.52
# Mc/sec: 11445.20
//
Query:       KKY18704.1  [L=373]
Description: putative glycoside hydrolase family 76 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-56  192.3  13.6      2e-56  192.1  13.6    1.0  1  Glyco_hydro_76   Glycosyl hydrolase family 76
    4.2e-07   29.4   5.5    0.00031   19.9   0.0    3.3  3  Glyco_hydro_88   Glycosyl Hydrolase Family 88
    2.9e-05   22.8   1.1      0.018   13.6   0.3    2.2  2  Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127
    0.00071   19.1   0.9       0.73    9.3   0.0    3.1  3  C5-epim_C        D-glucuronyl C5-epimerase C-terminus
     0.0027   17.0   0.5       0.27   10.4   0.0    2.9  3  GlcNAc_2-epim    N-acylglucosamine 2-epimerase (GlcNAc 2-epim


Domain annotation for each model (and alignments):
>> Glyco_hydro_76  Glycosyl hydrolase family 76
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.1  13.6   5.7e-60     2e-56       4     354 ..      40     372 ..      38     373 .] 0.92

  Alignments for each domain:
  == domain 1  score: 192.1 bits;  conditional E-value: 5.7e-60
                     HHHHHHHHHHHHHCETTECCTCTCBSCES-GHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHCCCTCEE-SSSTTCTC..SSEHHHHHHHHHHH CS
  Glyco_hydro_76   4 saaatiakgllkyYkgnesggtpgnlpdpyywWeagalfgalidywrltgdstyndlitqallaqagenydympanqsr..tegnDDqafwglaa 96 
                     s a+ + ++++++Y+++      g+++++  wW  g +++a +dy + tg  +y +l ++ +  q+ +  ++ p+   +   +  DD ++w+la+
      KKY18704.1  40 SVATDAIEAMMSFYNQT-----DGRFSTEAAWWLTGNALQATLDYMQKTGSRKYMSLAENTITKQRVPL-SWWPSGGGDfrADSTDDTGWWALAM 128
                     568899999*****988.....8*********************************************9.666666655347799********** PP

                     HHHHHH.....H--HHHHHHHHHHHHHHHHCB-SCSCCS-BBSEC..ESS--SEEEHHHHHHHHHHHHHH.HHHH--CHHHHHHHHHHHHHHHHS CS
  Glyco_hydro_76  97 mtaaernfpeptdepswLalAqavfntqasrwdeetcgGGlrWqiftwnsgydyknsisngplfqlaarL.arytgnetYlewAekvwdWvedvg 190
                     ++ +       t+++++L++A++   +++  w+++tcgGG+ W i    +  +y n+isn  ++++aa L ar+ g+  Yl  A + w W +++g
      KKY18704.1 129 IRMYDL-----TGKKEYLEIAKEDEAYMYGYWNTTTCGGGIIWDI----PSRTYHNAISNELYLKVAASLhARIPGDTYYLSHALEEWTWFQNSG 214
                     *****9.....9*********************************....999******************89999******************** PP

                     CSBTTTS-B-SEEE.TTTCCEEEE---HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH.HHHCEECTTEEEEEE-TTSTTCCTTHHHHHHH CS
  Glyco_hydro_76 191 liddedwlvyDgas.vednctdinklqwtYnqGtylsgaaylynaTgdekWldrvkgllnat.lstffpdgnilyevacepsekcnnDqrsFkgi 283
                     +i ++++l++Dg++  ++ ct+ +k++wtYnqG++l++ + ly+ ++d+++l  +++++na+  +t ++ ++il+e  ce + +c+++  +Fkgi
      KKY18704.1 215 MI-NSQFLINDGLTeSNESCTNNGKTTWTYNQGVILGALVSLYQTSHDKTYLLTATQIANAViHNTTLSPDGILTE-PCELTADCDSNGPAFKGI 307
                     **.**********659999*******************************************855555555*****.9***999*********** PP

                     HHHHHHHHH..SHHHHHHHHHHHHHHHHHHHTTTB...TTTS.B-TTTTTSSCCHHHHHHHHCCHHH..... CS
  Glyco_hydro_76 284 larwlaltaqlapetadtiepllrasaeaaakscsggsdgtt.cglkwlkgtwdgdaglgeqmsaleviqal 354
                     ++r la ++++ p +   ++++l ++a+ aa + ++    t  +gl+w  g +d+   +  q+sal+++ a+
      KKY18704.1 308 FVRNLAELDAVTPGNP--YKSYLTNNARSAAVNDRN---ATGfYGLSWK-GPFDEAD-IARQTSALSLFVAA 372
                     *************877..8999*******9944433...3444999998.8899888.99******988765 PP

>> Glyco_hydro_88  Glycosyl Hydrolase Family 88
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.5     0.017        62      11      60 ..      50      98 ..      41     102 .. 0.78
   2 !    7.5   0.3   0.00051       1.8      31      56 ..     121     146 ..     110     160 .. 0.87
   3 !   19.9   0.0   8.6e-08   0.00031      17      66 ..     231     280 ..     220     343 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.017
                    HHTTT--CCTSSTTCCE.HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH CS
  Glyco_hydro_88 11 kkkeegkvielkkenewewtnGvflsglleayeatgdkeyldyakawads 60
                    + + +++   +  e+ w w  G +l++ l++ + tg  +y+++a+++  +
      KKY18704.1 50 MSFYNQTDGRFSTEAAW-WLTGNALQATLDYMQKTGSRKYMSLAENTITK 98
                    33333555557778887.**************************998765 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00051
                     HHHHHHHHHHHHHHH--HHHHHHHHH CS
  Glyco_hydro_88  31 nGvflsglleayeatgdkeyldyaka 56 
                      G +  +++++y+ tg+keyl++ak+
      KKY18704.1 121 TGWWALAMIRMYDLTGKKEYLEIAKE 146
                     588899*****************997 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 8.6e-08
                     -CCTSSTTCCE.HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCTTS CS
  Glyco_hydro_88  17 kvielkkenewewtnGvflsglleayeatgdkeyldyakawadslidegg 66 
                     +  +++ +  w +++Gv+l++l+ +y+++ dk+yl  a+++a+ +i++ +
      KKY18704.1 231 ESCTNNGKTTWTYNQGVILGALVSLYQTSHDKTYLLTATQIANAVIHNTT 280
                     445578899*********************************99998765 PP

>> Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.3   4.9e-06     0.018     100     201 ..      38     145 ..      20     151 .. 0.81
   2 !    7.8   0.0   0.00027      0.98     118     158 ..     234     276 ..     182     301 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.9e-06
                      S-B-GCCTHH.....SSEETTEESH----HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH..HHCCS-CCHHHHHTTTHHCTHHHHHHH CS
  Glyco_hydro_127 100 GYlsavtelk.....neakkeawapdshelYnlgkliegavayyqatgkeklldvatrladylee..vleklgdeqlqkalvpehggieealvk 186
                      GY  a+  ++       + ++++   +  ++  g  +++ ++y q tg++k +++a +    +         g   ++    +++g    a+++
       KKY18704.1  38 GYSVATDAIEammsfYNQTDGRFST-EAAWWLTGNALQATLDYMQKTGSRKYMSLAENTITKQRVplSWWPSGGGDFRADSTDDTGWWALAMIR 130
                      5555555555555554577888888.999***************************99877663300334566778889999999999****** PP

                      HHHHHT-CHHHHHHH CS
  Glyco_hydro_127 187 lyelTgdkrYldlAk 201
                      +y lTg k+Yl++Ak
       KKY18704.1 131 MYDLTGKKEYLEIAK 145
                      **************8 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00027
                      SH..----HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH CS
  Glyco_hydro_127 118 ap..dshelYnlgkliegavayyqatgkeklldvatrladyle 158
                      ++  ++  +Yn g ++ ++v+ yq +++++ l  at++a+ + 
       KKY18704.1 234 TNngKTTWTYNQGVILGALVSLYQTSHDKTYLLTATQIANAVI 276
                      3333344456666666666666666666666666666666553 PP

>> C5-epim_C  D-glucuronyl C5-epimerase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.16   5.6e+02      32      65 ..      70     103 ..      48     124 .. 0.78
   2 !    6.2   0.1    0.0018       6.4      36      57 ..     126     147 ..     115     176 .. 0.75
   3 !    9.3   0.0    0.0002      0.73      30      61 ..     244     275 ..     228     288 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.16
   C5-epim_C  32 gqaisvllrAYeltgdekYlkaakkalksfkipv 65 
                 g+a+++ l   + tg  kY+++a++ +   ++p 
  KKY18704.1  70 GNALQATLDYMQKTGSRKYMSLAENTITKQRVPL 103
                 566666666678999999**99999998877765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0018
   C5-epim_C  36 svllrAYeltgdekYlkaakka 57 
                  +++r Y+ltg+++Yl++ak+ 
  KKY18704.1 126 LAMIRMYDLTGKKEYLEIAKED 147
                 56899**************874 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0002
   C5-epim_C  30 aqgqaisvllrAYeltgdekYlkaakkalksf 61 
                  qg ++ +l+  Y++++d+ Yl +a +  +++
  KKY18704.1 244 NQGVILGALVSLYQTSHDKTYLLTATQIANAV 275
                 79***********************9987765 PP

>> GlcNAc_2-epim  N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.2     0.016        57     256     303 ..      48      95 ..      35     101 .. 0.72
   2 ?   -0.4   0.1      0.15   5.2e+02     147     166 ..     127     146 ..     124     162 .. 0.79
   3 !   10.4   0.0   7.5e-05      0.27     145     185 ..     249     289 ..     219     310 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.016
                    SB-S-B-TTS-BSS--EEHHHHHHHHHHHHHHHHHH--CHHHHHHHHH CS
  GlcNAc_2-epim 256 glvytldaagkpvddakllWpqtEalkaaaalaeltgearylewyarv 303
                    +++ ++++++    ++  +W    al+a +   ++tg ++y+  +++ 
     KKY18704.1  48 AMMSFYNQTDGRFSTEAAWWLTGNALQATLDYMQKTGSRKYMSLAENT 95 
                    2444444444445588899**********************9887765 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.15
                    HHHHHHHTT-BTHHHHHHHH CS
  GlcNAc_2-epim 147 AmLalaeatgdkeyleraee 166
                    Am+ ++++tg+keyle a+e
     KKY18704.1 127 AMIRMYDLTGKKEYLEIAKE 146
                    77888888888888877764 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 7.5e-05
                    HHHHHHHHHTT-BTHHHHHHHHHHHHHTTTTGGGGTT---- CS
  GlcNAc_2-epim 145 leAmLalaeatgdkeyleraeeiaelvisefadaesglvrE 185
                    l A+  l++ ++dk+yl +a +ia++vi++     +g++ E
     KKY18704.1 249 LGALVSLYQTSHDKTYLLTATQIANAVIHNTTLSPDGILTE 289
                    678999*******************************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.35s 00:00:00.93 Elapsed: 00:00:00.52
# Mc/sec: 2163.59
//
Query:       KKY18705.1  [L=394]
Description: putative acid phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.2e-126  420.5   0.0   4.8e-126  420.3   0.0    1.0  1  PI-PLC-C1  Phosphoinositide phospholipase C, Ca2+-dependent


Domain annotation for each model (and alignments):
>> PI-PLC-C1  Phosphoinositide phospholipase C, Ca2+-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  420.3   0.0  2.7e-130  4.8e-126       1     329 []      43     378 ..      43     378 .. 0.97

  Alignments for each domain:
  == domain 1  score: 420.3 bits;  conditional E-value: 2.7e-130
   PI-PLC-C1   1 lrlnqiqviGtHNSYkreispkllealkkknaksaealeYshasleeqldl.gvrqlElDvyaDekGGkyakplilelakeaapldpeeelkkpglKvl 98 
                 lr+nqiq+iGtHNSY+re+s ++  +   +  ++ e+++Ysh++l+ q ++ +vr++E+D++aD++GGkya+pl+++la+   p+ ++ +++k g+Kv+
  KKY18705.1  43 LRMNQIQIIGTHNSYHREVSLEERPYHA-VLLSDPENYYYSHSALNLQAEYqNVRSFEIDIWADPEGGKYATPLVRKLAHL--PFPSDPAMNKSGTKVI 138
                 79*******************8877665.566799****************9****************************9..9*************** PP

   PI-PLC-C1  99 HvadldvrstcetlvecLkevkkWsdahpkhvpifillelkdeesalakklteaeeft.aelldaldaeirsvlgeeklitPddvrgkaktLeeavlkk 196
                 Hv+d+dv +tc+t++ecL+ ++kWs+ahp+hvpi+ ++e+k++   ++   +++ +++ +ell++ldae rsv++ ++litPdd+r+ + tLee+vl+ 
  KKY18705.1 139 HVPDADVGTTCHTFIECLNVIRKWSKAHPNHVPIPCMIEFKTSGDLSSLGGATPLQWNdTELLASLDAEFRSVFAGDELITPDDIRRGNLTLEESVLTY 237
                 *******************************************999888789*****999*************************************** PP

   PI-PLC-C1 197 gWPtLesarGkvlflldneeekk....daYlaghpsLegrvlFtnaepgepdaAfiklndpvkee.aeiqelvkkgylvRtraDedtkearendt.srr 289
                 gWP+LesarG+v+f++d+  ++     +aY++g+p+Legrv+F +++pgepd+Af k+n p+ +  +eiq+ vkk+y+vRtraD +++++++ndt srr
  KKY18705.1 238 GWPELESARGRVMFMMDDGATTLgatrAAYIEGRPNLEGRVVFSQSQPGEPDCAFRKMNTPTGDYhQEIQDSVKKNYWVRTRADIPITTILSNDTtSRR 336
                 *******************998788889**********************************99889***************************9899* PP

   PI-PLC-C1 290 daalasgAqivstDypaa..sarfksdYavrleggkvarcnP 329
                 daa++sgAq+v+tD+pa+  sar+++dY+vr+++g  arcnP
  KKY18705.1 337 DAAFSSGAQMVTTDWPAYgmSARYDVDYVVRFADGGPARCNP 378
                 *****************999*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.52
# Mc/sec: 2281.43
//
Query:       KKY18706.1  [L=440]
Description: putative ccch zinc finger dna binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   12.3   2.8       0.22   11.6   0.5    2.7  2  zf_CCCH_4  Zinc finger domain
       0.17   12.6   0.7        0.7   10.6   0.8    1.9  2  DUF4404    Domain of unknown function (DUF4404)
        4.7    7.2   6.8       0.51   10.3   0.8    2.5  3  Takusan    Takusan
        8.1    6.5  13.0        1.4    9.0   0.4    3.4  3  zf-CCCH    Zinc finger C-x8-C-x5-C-x3-H type (and similar)
        8.8    6.3  10.2    1.5e+02    2.4   9.5    3.2  2  zf-CCCH_4  CCCH-type zinc finger


Domain annotation for each model (and alignments):
>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.88   3.2e+03       8      15 ..     402     409 ..     402     410 .. 0.91
   2 ?   11.6   0.5   6.1e-05      0.22       9      18 ..     415     424 ..     414     424 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.88
   zf_CCCH_4   8 tCkkGdkC 15 
                 tC  G +C
  KKY18706.1 402 TCVAGHRC 409
                 7999***9 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 6.1e-05
   zf_CCCH_4   9 CkkGdkCrFa 18 
                 C++G++CrFa
  KKY18706.1 415 CTRGSNCRFA 424
                 *********7 PP

>> DUF4404  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.8   0.00019       0.7       6      65 ..       4      67 ..       2      75 .. 0.83
   2 ?   -1.9   0.0       1.5   5.4e+03      46      69 ..     106     129 ..      97     135 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00019
     DUF4404  6 ekLheeLeqnesldeetralLeslaedieellaeedaaaeeee....laerlneaverFeeeHP 65
                + L+++L+  + +d e  + Le+l+  ie + ae d+a  + +    +++ l++ +++ e++  
  KKY18706.1  4 DGLRQQLDAIKVTDAERVNFLETLIGRIELITAERDEAITKLAhadkFSKYLQTEIKHLETKSR 67
                679**************************99999998876655566788888999999988765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.5
     DUF4404  46 eeelaerlneaverFeeeHPklag 69 
                 ++el +r+++ +e+ e   P+ + 
  KKY18706.1 106 ARELRKRIESYMETLEGFQPHWKI 129
                 333888999888888888887665 PP

>> Takusan  Takusan
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.8   0.00014      0.51      13      46 ..      18      51 ..      12      75 .. 0.73
   2 ?   -3.0   0.1       1.9   6.9e+03      35      45 ..     108     118 ..     107     120 .. 0.87
   3 ?   -2.7   0.1       1.5   5.6e+03      25      43 ..     209     226 ..     207     227 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00014
     Takusan 13 eqakkklEeLkleLrkitreRdELrdiLalyteg 46
                 ++ + lE+L+  +++it+eRdE    La+  + 
  KKY18706.1 18 AERVNFLETLIGRIELITAERDEAITKLAHADKF 51
                5677889****************99999886555 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.9
     Takusan  35 ELrdiLalyte 45 
                 ELr++   y+e
  KKY18706.1 108 ELRKRIESYME 118
                 99***999998 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.5
     Takusan  25 eLrkitreRdELrdiLaly 43 
                 +Lr+ t   +E +++L+l+
  KKY18706.1 209 YLRQYT-LTNEVCKRLTLI 226
                 566665.369999999985 PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   2.5     0.031   1.1e+02       3      25 ..     351     371 ..     349     372 .. 0.84
   2 ?   -0.1   0.1      0.26   9.2e+02      14      21 ..     391     398 ..     387     399 .. 0.82
   3 ?    9.0   0.4   0.00038       1.4      15      24 ..     415     424 ..     414     424 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.031
                 CHCBCHHHHHS--TTGGG-SSBS CS
     zf-CCCH   3 telCrffmrtGyCkyGdrCkFaH 25 
                  +lC +++   +C+y + C  +H
  KKY18706.1 351 KKLCNRYFL-SSCPY-EDCTHNH 371
                 589******.*****.8887666 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.26
                 --TTGGG- CS
     zf-CCCH  14 yCkyGdrC 21 
                  C++G+ C
  KKY18706.1 391 PCPRGAWC 398
                 5****977 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00038
                 -TTGGG-SSB CS
     zf-CCCH  15 CkyGdrCkFa 24 
                 C +G++C+Fa
  KKY18706.1 415 CTRGSNCRFA 424
                 *********8 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.42   1.5e+03       1       7 [.     191     197 ..     191     201 .. 0.73
   2 ?    2.4   9.5     0.041   1.5e+02      10      20 ..     414     424 ..     390     424 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.42
   zf-CCCH_4   1 rlCpyfa 7  
                 ++C++++
  KKY18706.1 191 VHCKHIL 197
                 58***98 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.041
   zf-CCCH_4  10 sCrfGdnCrFs 20 
                  C+ G+nCrF+
  KKY18706.1 414 VCTRGSNCRFA 424
                 5*********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 2828.42
//
Query:       KKY18707.1  [L=1001]
Description: hypothetical protein UCRPC4_g04858 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-16   59.2   0.0      2e-15   57.4   0.0    2.0  2  AAA            ATPase family associated with various cellular
     0.0012   19.2   0.1     0.0094   16.2   0.0    2.3  2  AAA_22         AAA domain
     0.0016   18.9   5.9     0.0041   17.5   0.1    3.4  4  AAA_16         AAA ATPase domain
     0.0053   16.8   0.0      0.012   15.6   0.0    1.6  1  AAA_5          AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.063   13.0   0.6        2.7    7.7   0.0    2.5  2  AAA_24         AAA domain
      0.092   13.1   0.3       0.19   12.1   0.3    1.6  1  DASH_Hsk3      DASH complex subunit Hsk3 like
       0.89    9.6   4.3       0.73    9.9   0.6    2.6  2  FlxA           FlxA-like protein


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.7   6.8e+03      28      65 ..      81     115 ..      76     118 .. 0.70
   2 !   57.4   0.0   7.9e-19     2e-15       1     130 [.     648     767 ..     648     769 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.7
                 EEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEE CS
         AAA  28 eisgsellskyvgesekkirelfkeakekakpsilfiD 65 
                 e+s+s+l  + ++e +kk+++l +++++   p ++  D
  KKY18707.1  81 ELSASDLA-SQLKELQKKLANLTEKVEKV--PQVITAD 115
                 67777777.55788888888888877654..5666555 PP

  == domain 2  score: 57.4 bits;  conditional E-value: 7.9e-19
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 +ll+G pG+GKTl+a+ +a  + ++++ i + ++  ++ ++ e k+++ fk a +    ++l++DE+d +  +r ++ + +++ +v+++l++l+ ++  
  KKY18707.1 648 ILLHGAPGVGKTLTAETIAAYTRRPLYPITCGDIG-QTPSDIETKLEHHFKLAHKWG--CVLLLDEADVFLARR-ERGDVKRNGLVSVFLRVLEYYSG- 741
                 69*********************************.888888889999998888776..***********9999.888999999************99. PP

                 SSTEEEEEEESSGGGSTHHHHSTTSSEEEET CS
         AAA 100 eskvivigatnrpdkldpallrgRfdrkiei 130
                     i+ ++tn++  +d+a+  +R+ + ++ 
  KKY18707.1 742 ----ILFLTTNQVGVFDEAFK-SRIHISLYY 767
                 ....99***************.9*9988775 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.7e-06    0.0094       5      65 ..     645     697 ..     640     702 .. 0.83
   2 ?   -0.2   0.0      0.43   1.1e+03      79     102 ..     689     713 ..     667     725 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.7e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.sskdllrellralg 65 
                   i++++G +G+GKT+++++++            r++++ +t+   + +++d+ ++l + ++
  KKY18707.1 645 GLIILLHGAPGVGKTLTAETIAAYT---------RRPLYPITCGDIGqTPSDIETKLEHHFK 697
                 6799*****************9988.........8999999998888888888777776665 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.43
      AAA_22  79 lealeqalrarav.ielliiDEaqh 102
                  ++le++++ +++   +l++DEa+ 
  KKY18707.1 689 ETKLEHHFKLAHKwGCVLLLDEADV 713
                 4556666666666889*******97 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.13   3.2e+02     106     154 ..      66     127 ..      21     136 .. 0.65
   2 ?   -2.0   0.1       1.5     4e+03      94     162 ..     531     601 ..     526     616 .. 0.68
   3 !   17.5   0.1   1.6e-06    0.0041      21      51 ..     642     671 ..     629     685 .. 0.84
   4 ?   -1.3   0.0      0.98   2.5e+03     115     147 ..     684     714 ..     676     730 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.13
      AAA_16 106 a...........avpelagaea.srllellkrllallsrder.plvlvlDdlqwadeaslql 154
                 a           a +el++++  s+l el k+l++l+++ e+ p v++ Dd ++ d++  +l
  KKY18707.1  66 AsdnsigregpmAERELSASDLaSQLKELQKKLANLTEKVEKvPQVITADDDDDDDDDGTKL 127
                 344444444433344444444434444444444466666666789******99999988876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.5
      AAA_16  94 leawrekleealaavpelagaeasrllellkrll.allsrderplvlvlDdlqwadeaslql.laaLlrll 162
                 +e+w+ek ++ ++  ++ +++++ + lell + l  +  + ++   l +D +q +d++  +  +++L+ ++
  KKY18707.1 531 HEDWKEKNQGLIRLLDPEKDEIPDQYLELLPKELlGYVFKSRSWYFLDVDKVQNIDDSHESRgFDELVIEP 601
                 67888888888888888888888888888877776555553333777788888888866555555555444 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 1.6e-06
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekd 51 
                 +gr+ ++ll+G++GvGK+  +++++ a++++
  KKY18707.1 642 KGRGLIILLHGAPGVGKTLTAETIA-AYTRR 671
                 6888*******************99.55554 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.98
      AAA_16 115 easrllellkrllallsrderplvlvlDdlqwa 147
                  +s++  +l ++++l+++     vl+lD+++ +
  KKY18707.1 684 TPSDIETKLEHHFKLAHK--WGCVLLLDEADVF 714
                 557788889999988887..559******9965 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.6e-06     0.012       2      46 ..     648     693 ..     647     716 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.6e-06
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--T.T--HHHHH--B- CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltr.dtteedlkgrre 46 
                 +lL G+pG+gK+  ae +aa ++r++  + + + + t++d+  ++e
  KKY18707.1 648 ILLHGAPGVGKTLTAETIAAYTRRPLYPITCGDiGQTPSDIETKLE 693
                 69***********************999987543566666666655 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.032        82     108     189 ..      88     178 ..      64     189 .. 0.76
   2 ?    7.7   0.0    0.0011       2.7       3      27 ..     646     673 ..     644     677 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.032
      AAA_24 108 aeefrrllkklqelrk...nvifiahektrkdedpege...akytrlepklgkktanelkeevDlvlranlkred...kvgervlktskse 189
                 a ++++l kkl +l +    v  +  ++ + d+d++g+   +++ r++++  + ++  +   +  vl a +k+ +   k+ ++  +t++se
  KKY18707.1  88 ASQLKELQKKLANLTEkveKVPQVITADDDDDDDDDGTklePEIKRFPMSKYSTDKLTFSDFSKNVLVAYYKKMSsaaKGEQKPGDTDESE 178
                 555666666666666666656555555555555555555689999*************************998888886666666666655 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0011
      AAA_24   3 lkiliyGpsgiGKTtlakel...gpkpl 27 
                 l il+ G +g+GKT +a ++   + +pl
  KKY18707.1 646 LIILLHGAPGVGKTLTAETIaayTRRPL 673
                 6799*************99966666665 PP

>> DASH_Hsk3  DASH complex subunit Hsk3 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   7.6e-05      0.19       5      26 ..      85     106 ..      79     108 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.6e-05
   DASH_Hsk3   5 shLasqLaqLqaNLadteelle 26 
                 s LasqL++Lq+ La+++e +e
  KKY18707.1  85 SDLASQLKELQKKLANLTEKVE 106
                 67****************9887 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.6   0.00029      0.73      11      45 ..      83     118 ..      77     133 .. 0.74
   2 ?   -0.7   0.2      0.55   1.4e+03      40      61 ..     264     285 ..     260     290 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00029
        FlxA  11 sssgsasqiasLqkQiknlqkqLkelses.deltke 45 
                 s s+ asq+++Lqk ++nl+++++++ +  ++ +++
  KKY18707.1  83 SASDLASQLKELQKKLANLTEKVEKVPQViTADDDD 118
                 667889*****************9999886333333 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.55
        FlxA  40 deltkeekkkqqqliqaQIqql 61 
                 +e +kee +kq++++  Q+ +l
  KKY18707.1 264 TEHDKEEEMKQEKTVIGQLRIL 285
                 6889999999999988887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1001 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1278  (0.0712812); expected 358.6 (0.02)
Passed bias filter:                      726  (0.0404931); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.93u 0.31s 00:00:01.24 Elapsed: 00:00:00.50
# Mc/sec: 6021.74
//
Query:       KKY18708.1  [L=582]
Description: hypothetical protein UCRPC4_g04859 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   11.2   0.6       0.51    9.6   0.0    2.0  2  DUF2310   Zn-ribbon-containing, possibly nucleic-acid-binding


Domain annotation for each model (and alignments):
>> DUF2310  Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   2.8e-05      0.51     140     194 ..      50     104 ..      45     109 .. 0.92
   2 ?   -1.7   0.3     0.078   1.4e+03      64     100 ..     231     268 ..     200     285 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 2.8e-05
     DUF2310 140 aneeskdilkWqedwqacdqLqmngsvlekealkeisdvnSelskrGrelckrie 194
                  ++++++++k q++  + d+++  +++++++++ke++d++ +   +G  + k i+
  KKY18708.1  50 VESKRETVVKKQRSLLNFDEIYADSKAAQQKFIKEMQDFKQKANDAGEPIGKDID 104
                 5678999*****************************************9999997 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.078
     DUF2310  64 kkynneyvkealekleeagllapkv.elvgedlnseet 100
                 +++n + v++++++++++      v e++g+++++++t
  KKY18708.1 231 EHFNKQAVTSQMRHVKQVREDVMAVkEVQGQQIEQTAT 268
                 35566666666666666554433331344555444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1376  (0.0767472); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.48
# Mc/sec: 3610.50
//
Query:       KKY18709.1  [L=254]
Description: putative glycoside hydrolase family 16 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-06   27.8   0.3    4.2e-06   26.4   0.3    1.7  1  Glyco_hydro_16  Glycosyl hydrolases family 16
  ------ inclusion threshold ------
       0.14   12.1   0.1       0.45   10.4   0.1    1.8  2  Tail_tube       Phage tail tube protein


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.3   4.7e-10   4.2e-06      13     162 ..      70     233 ..      58     247 .. 0.66

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 4.7e-10
                     GEEEETTSEEEEEEEE...........EEEEEEEECCEES...SE..EEEEEEE---STTEEEEEEEETGGTSTTEEEEE.EEETT-TTEEEEEE CS
  Glyco_hydro_16  13 avsvengetltltldk...........esgsrikskksfl...yG..kvearikaaksaGvvtafylssedekahdEiDi.EflGndtgkvqtnv 90 
                     av    g tltlt+             ++++++  k+sf+    G   ++a+  a++ +G+++af+l+ + + +  EiD+ E+ G   gk++ n+
      KKY18709.1  70 AVIDPAG-TLTLTAVYtgpqsddssisYNSGTVYAKQSFTveaSGglDFSASFIAPTVTGTWPAFWLTAT-SGWPPEIDMaEWKGD--GKISFNT 160
                     4433344.67777666777788777777777777777776333563445555559************863.48999********98..99***** PP

                     EBTTBSGEEEEEETSS-TTTS-EEEEEEEETTE.....EEEEETTEEEEEEESSHHHHT.--EESEEEEEEEEEEBS CS
  Glyco_hydro_16  91 ygkGkgkrekrlslwfdptedfHtYaieWtpdk.....ikfyVDgkpvrtltkkeaeevkyPqftpmkvavslwpgs 162
                     + + +  +   ++ ++dp  +fH+ + e  +++     ++fy+Dg+++ t + +   ++   ++ +  +++    gs
      KKY18709.1 161 FNTSSVVATDDIT-YSDP-GEFHSVKAELRDENgsdvsVTFYLDGTEITTQYAEGYVGQ--SMYLIIDLQMEGSSGS 233
                     *888866554444.4444.7899998887665333333899999999998887755433..4455555555544444 PP

>> Tail_tube  Phage tail tube protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.29   2.6e+03      14      30 ..      61      77 ..      58     119 .. 0.54
   2 ?   10.4   0.1     5e-05      0.45      19      93 ..     150     221 ..     147     233 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.29
   Tail_tube 14 Gkelevkggaelnpggv 30
                G+ +++++ a ++p+g+
  KKY18709.1 61 GAAIMLESNAVIDPAGT 77
                44444444444444443 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 5e-05
   Tail_tube  19 vkggaelnpggvkRetvvggdgVvgysekpkapsieatiadeedldleelkaltnatvtfeldnGktyvlsgAwl 93 
                  kg++++ +++++  +vv++d  + ys   +  s++a+++de++ d++ +  l++ ++t + + G  yv + ++l
  KKY18709.1 150 WKGDGKISFNTFNTSSVVATDD-ITYSDPGEFHSVKAELRDENGSDVSVTFYLDGTEITTQYAEG--YVGQSMYL 221
                 689****************998.66**************************************99..55666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1832.82
//
Query:       KKY18710.1  [L=364]
Description: putative glycolipid anchored surface protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-73  247.5   0.3    2.1e-50  171.8   0.0    2.0  2  Glyco_hydro_72  Glucanosyltransferase


Domain annotation for each model (and alignments):
>> Glyco_hydro_72  Glucanosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.8   0.0   1.2e-54   2.1e-50       8     215 ..       4     219 ..       1     220 [. 0.92
   2 !   76.1   0.1   1.6e-25   2.8e-21     233     313 ..     217     297 ..     215     299 .. 0.96

  Alignments for each domain:
  == domain 1  score: 171.8 bits;  conditional E-value: 1.2e-54
                     TS--EEEETTEEEETTT-BBE-EEEEE--BE------SSB-GGG-HH..HHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EE.... CS
  Glyco_hydro_72   8 aveaieikgnkffdsksgeqfyikGvdyqpggseevsslvdpladae..aCkrdikllkelgvntvrvyavdnskdhdeCmkalsdagiyv.... 96 
                     a  +iei g+ f+  + g++f i+Gv yq+++s+ +++ vdplad +    krd++l+ elg+nt+ vy +d++k hd+ m++l+dagiyv    
      KKY18710.1   4 AEIPIEIGGRYFW--RDGDRFIIRGVVYQTNSSDRSQQWVDPLADDRleDLKRDLSLFVELGLNTIHVYRIDSTKCHDAVMRLLADAGIYVvlvs 96 
                     5679******999..89****************************764489***************************************93333 PP

                     EEES-BTTBS--TTS-..---HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSS....S----EEEEE--- CS
  Glyco_hydro_72  97 ildlnepkesinradpassynedllervfkvidafkeyknvlgffaGnevvndksntaasayvkavvrdvkeyikkkk....erkiPvGysaadd 187
                     il l e+   inr d+ +syn dll+++f  +d++++y n+lg     evvnd  +t a+  vkavvrdvk+y+k k+    +r +PvG sa+d+
      KKY18710.1  97 ILALFETLDIINRLDAVKSYNLDLLQHFFMKLDSMAKYANTLGVIVAAEVVNDVPSTPAAEIVKAVVRDVKRYVKLKSelteHRVLPVGVSASDV 191
                     3567788999****************************************************************9875233379*********** PP

                     TTTHHHHHHHTTBTT-..--S-EEEEE- CS
  Glyco_hydro_72 188 aelrvelaeylaCgdeddkadffglnmy 215
                      +lr+  ++y+  g++++++dff+++ +
      KKY18710.1 192 LALRKPQFQYFCAGNTEESVDFFTIDLF 219
                     ***********************99765 PP

  == domain 2  score: 76.1 bits;  conditional E-value: 1.6e-25
                     HHHTT-SS-EEEEEE---SSSS---THHHHHTSHHHHTTEEEEEES-SB--SSS--SEEE-TTS-EEE-THHHHHHHHHHH CS
  Glyco_hydro_72 233 kefenysiPlflseyGCnkvtprkftevealyseemtsvfsGGlvyeyseeannyGlvkiddddvkkllkdfenlkseykk 313
                     + f+++++P+f+seyG     +r+f+e +a++s  mt vfsGG +ye +  +n+yG+v+id++++  +l+dfen+k+++++
      KKY18710.1 217 DLFSDATVPVFFSEYGGKVWDHRTFQETKAIFSPRMTTVFSGGCAYELFMHSNKYGMVDIDEHGNLIKLTDFENYKQSLQD 297
                     6799************************************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2563.25
//
Query:       KKY18738.1  [L=1475]
Description: hypothetical protein UCRPC4_g04799 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-36  123.9  21.5    7.1e-36  123.9  21.5    7.4  9  MRC1      MRC1-like domain


Domain annotation for each model (and alignments):
>> MRC1  MRC1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.4         1   1.8e+04     102     115 ..     118     133 ..     101     148 .. 0.52
   2 ?   -1.1   1.8      0.14   2.4e+03      89     133 ..     199     248 ..     196     257 .. 0.57
   3 ?   -2.2   7.2      0.31   5.5e+03       6     137 ..     238     317 ..     226     326 .. 0.47
   4 ?   -5.6  15.7         1   1.8e+04      62     107 ..     566     617 ..     546     628 .. 0.66
   5 ?   -0.3  20.9     0.078   1.4e+03      18     127 ..     624     737 ..     619     754 .. 0.67
   6 !  123.9  21.5   3.9e-40   7.1e-36       2     145 ..     975    1117 ..     974    1118 .. 0.89
   7 ?   -4.3   0.4         1   1.8e+04     105     123 ..    1136    1147 ..    1122    1166 .. 0.40
   8 ?   -5.8   6.9         1   1.8e+04      24      48 ..    1248    1273 ..    1223    1285 .. 0.51
   9 ?   -2.8   0.6      0.45   8.1e+03     112     135 ..    1424    1447 ..    1422    1452 .. 0.75

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 1
        MRC1 102 DsDdee..aelrrrkr 115
                 D+Dd+   a+ +r ++
  KKY18738.1 118 DDDDDVpgAAYERIRK 133
                 4444444433333332 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.14
        MRC1  89 rrrraggndldls..DsDdee...aelrrrkrrrrekkrkalledeklek 133
                 rr  a+ +d ++s  + + e+   ++ + r  +  ek+r+++le+e +e+
  KKY18738.1 199 RRSTAEPQDAEFSesETESEDglsKKPNPRLMALVEKQRQKRLEKEAVEA 248
                 56445567777774323333355655555666667778887888776654 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.31
        MRC1   6 sefveeeAeeSeDeyaGlggvsdeeeedeeddaeleeliDdesedeevdkdelaaekakeereeDdkevekllkdittGglRkrrrraggndl.dlsDs 103
                 ++ +e+eA e e  +                                                       + l+  +  ++R r     ++   + s s
  KKY18738.1 238 QKRLEKEAVEAEKKA-------------------------------------------------------ARLEALQAMEHRPRGS-SPADASeEDSGS 280
                 233333333333333.......................................................3334444444552222.222222233345 PP

        MRC1 104 Ddee..aelrrrkrrrrekkrkallede.kleklakn 137
                 Dd +  ++l +++r  r+  +kal e + +++++ +n
  KKY18738.1 281 DDGHagQRLTQHARPTRKASKKALEEMNrETQRISRN 317
                 5555665555555555555555555555455555444 PP

  == domain 4  score: -5.6 bits;  conditional E-value: 1
        MRC1  62 kakeereeDdkevekllkdittGglRkrrrr.ag.gndldls....DsDdee 107
                 +  eere++++eve l++++ + +    rr+ ++ ++d  ++    D+Dde 
  KKY18738.1 566 QTAEEREKEQQEVEDLVEKARQEAAEIQRREeRKaKKDGTFEddglDDDDEY 617
                 5678999999999999999999776655544455555555553255555554 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 0.078
        MRC1  18 DeyaGlggvsdeeeedee...ddaeleeliDdesedeevdkdelaaekakeereeDdkevekllkdittGglRk...rrrraggndldlsDsDdeeael 110
                 De   + g +d++++++e   d+++++el + + e+++  + e+ +   +ee+++D+  ve ll+  ++        +r+r+++ +  l DsDde  e 
  KKY18738.1 624 DEDEQFSGSDDDDDGENEseeDAESDDELTEGKGESAKLIDGEASEVDSEEEEQADQDHVEDLLESSENELVNVtplKRERTRRTQRALIDSDDEM-ES 721
                 55567778866666555445577788999999998888999999999999999999999999998877755432222454433445567799**99.56 PP

        MRC1 111 rrrkrrrrekkrkalle 127
                   ++++    +++ lle
  KKY18738.1 722 PDMEQQATPIQQQ-LLE 737
                 6666666655555.444 PP

  == domain 6  score: 123.9 bits;  conditional E-value: 3.9e-40
        MRC1    2 kkkasefveeeAeeSeDeyaGlggvsdeeeedeeddaeleeliDdesedeevdkdelaaekakeereeDdkevekllkdittGglRkrrrrag.gnd 97  
                  ++ka+e v+e AeeSeDeyaGlgg+sd+ee +++++ e++++iDde+ +e+vd++elaa++a++er+eD+++v+kll+dit+G+lR++r+ ag  +d
  KKY18738.1  975 ESKAKEHVDEAAEESEDEYAGLGGASDDEE-GQANE-EDQKMIDDEN-NEKVDERELAALHADKERAEDSAAVSKLLQDITSGRLRRKRG-AGgFDD 1067
                  5899************************99.66667.9********9.**************************************6664.554888 PP

        MRC1   98 ldlsDsDdee..aelrrrkrrrrekkrkallede..kleklaknpkakAFvk 145 
                  ldlsD++     a++r++krr+++k r++ll +   +++k+a++pk++AF++
  KKY18738.1 1068 LDLSDEE--SayARRREAKRREFAKIRRELLVNSdeRIGKIANDPKKHAFLN 1117
                  8999555..45599***************9876545**************97 PP

  == domain 7  score: -4.3 bits;  conditional E-value: 1
        MRC1  105 deeaelrrrkrrrrekkrk 123 
                  +e        +++ +++++
  KKY18738.1 1136 EET-------EASSQSQQQ 1147
                  222.......122222222 PP

  == domain 8  score: -5.8 bits;  conditional E-value: 1
        MRC1   24 ggv..sdeeeedeeddaeleeliDdes 48  
                    +   +++e de+dd  ++ +++de 
  KKY18738.1 1248 MEAldHEDKEADEDDD-MDDFIVEDEP 1273
                  2224233333333333.5555556554 PP

  == domain 9  score: -2.8 bits;  conditional E-value: 0.45
        MRC1  112 rrkrrrrekkrkalledeklekla 135 
                  +r+++r+e +r++l   ++ +k+ 
  KKY18738.1 1424 SRAQQREEDMRRRLEGGKGGKKVG 1447
                  688999999999998877766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1826  (0.101846); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.50u 0.39s 00:00:01.89 Elapsed: 00:00:00.61
# Mc/sec: 7298.14
//
Query:       KKY18739.1  [L=315]
Description: hypothetical protein UCRPC4_g04800 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.11   11.4   0.1       0.14   11.0   0.1    1.2  1  DUF1015         Protein of unknown function (DUF1015)
       0.12   12.5   0.1       0.27   11.4   0.1    1.5  1  Alpha-mann_mid  Alpha mannosidase middle domain


Domain annotation for each model (and alignments):
>> DUF1015  Protein of unknown function (DUF1015)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   1.6e-05      0.14     252     360 ..     199     307 ..     172     315 .] 0.68

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.6e-05
     DUF1015 252 LkilpihRvvkdlnglseeelleklaeafev...apfglylkdgkwyklltlkdkavrsLdvsvlqelllepilgiedprkderidyvhgleeavekvd 347
                 L++  +hR v+  ++ +  +  + +a         +++  + +g + +l + ++ ++++L   +l+  l ++il+++d+++++r  + + +++++++v+
  KKY18739.1 199 LRLVKVHREVSAVEKRTGYQGWDMIAHPTAQgsfPSLSASM-SGLATSLAA-NK-RLDRLTNEMLSAALDDQILDLQDMDQQARALFQGHIQALQRRVH 294
                 66666666666544433333333333322112212133333.332333333.33.69*****************************************9 PP

     DUF1015 348 sgeagvafllnpt 360
                  +++++ ++l  +
  KKY18739.1 295 VQQMHIKLCLSRV 307
                 9988888887766 PP

>> Alpha-mann_mid  Alpha mannosidase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1     3e-05      0.27       4      59 ..     240     299 ..     238     307 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3e-05
                     -GGGTSSCHHHHHHHHHHHHHHHH...HHHCCTTT.-SCGC-HHHHHHHHHHHHHHHTCT CS
  Alpha-mann_mid   4 rgtfTSrarlKrlnrkleslLraa...ellssaaa.skgyeypkeeleelwkalllnqfH 59 
                     +g  TS a++Krl+r ++++L+aa   ++l  + + ++  +  + +++ l + + ++q H
      KKY18739.1 240 SGLATSLAANKRLDRLTNEMLSAAlddQILDLQDMdQQARALFQGHIQALQRRVHVQQMH 299
                     6899******************97442344445557889999999*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.53
# Mc/sec: 1779.59
//
Query:       KKY18740.1  [L=330]
Description: putative 2og-fe oxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-31  109.8   0.1      2e-31  109.2   0.1    1.2  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    1.3e-23   83.4   0.0      4e-23   81.8   0.0    1.8  2  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2   0.1   2.3e-35     2e-31       2     118 .]       7     130 ..       7     130 .. 0.92

  Alignments for each domain:
  == domain 1  score: 109.2 bits;  conditional E-value: 2.3e-35
      DIOX_N   2 Pvidlspl.sddedraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKeklaksp..sfrGysrlgeektdg.kkldwkesfdlg 96 
                 P+id+s++ ++de+r+++++q+r+Ac + Gff++vnhgv+++l d ++e++r  FalP+e+Kek+ k++   +rGy+rl ++++++ + +d+ke+f++g
  KKY18740.1   7 PIIDFSAAhGNDEERQKLVDQIRAACITQGFFQLVNHGVSSNLQDSILEQSRAVFALPLEVKEKYNKDQdgFNRGYERLRSQTFEKnAGGDLKEGFYFG 105
                 9*****998888*****************************************************66544588***********99999********** PP

      DIOX_N  97 telpeddp...agkplegpnqwPee 118
                 ++lp  ++   a+k  +gpn+ P+e
  KKY18740.1 106 KDLPLHASnvkARKFGQGPNKYPDE 130
                 ****666556688889******986 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.54   4.8e+03      71      87 ..      33      48 ..      25      61 .. 0.80
   2 !   81.8   0.0   4.5e-27     4e-23       4      99 ..     180     278 ..     177     280 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.54
                  HTTS-S----EEE---- CS
  2OG-FeII_Oxy 71 lsngryksvlHrVlpvn 87
                  ++ g+++ v H+V  +n
    KKY18740.1 33 ITQGFFQLVNHGVS-SN 48
                  68899999999997.44 PP

  == domain 2  score: 81.8 bits;  conditional E-value: 4.5e-27
                   EEEEEEE-S------...---EEEEEESSSEEEEEEE-TT---EE.EE.TEEEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTGSEEEE CS
  2OG-FeII_Oxy   4 llvlnyypphpdpev...ilglgahtdaslltillqddvgglevf.kd.gkwlrvppvdnslivniGdallflsngryksvlHrVlpvnegerRvsi 95 
                   +l+l +y p++dp+    + g+gahtd + +tillqd+vggl+v  ++ g+w++v p +++++vn G++++ ++n ry s+ HrV   + g++R+si
    KKY18740.1 180 VLRLLHY-PSQDPDAsanERGIGAHTDFGAITILLQDTVGGLQVWnRQnGTWVDVVPIPGAYVVNLGNMMMRWTNDRYLSNIHRVI-NKSGQERYSI 274
                   5667776.66688866789*************************6444366**********************************9.555566**** PP

                   EEEE CS
  2OG-FeII_Oxy  96 ayfi 99 
                    +f+
    KKY18740.1 275 PFFF 278
                   **97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.51
# Mc/sec: 1965.09
//
Query:       KKY18741.1  [L=243]
Description: putative organophosphate acid anhydrase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.7e-14   51.7   0.0    9.9e-14   51.4   0.0    1.1  1  Amidohydro_1  Amidohydrolase family
    4.1e-08   33.1   0.0    5.4e-08   32.7   0.0    1.1  1  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   1.1e-17   9.9e-14     124     328 ..      11     227 ..       4     240 .. 0.73

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 1.1e-17
                   CGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHCCEEEHCTCEEE....HHHHHHHHHHHHHHCEE CS
  Amidohydro_1 124 heapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafgetiehgthlevaeslglldeiklilahgvhlt....pteaellkerlkeagva 216
                   ++ p +s+++l +a+k a  + +   +H+l  + ++  a++ +++++ h ++       +  +++  i++ +v++t    +           +a+++
    KKY18741.1  11 PGLPVLSQNTLGAAVKQAYSHSKITIVHVLTFPTAQ-TAVDIGIDGVAHLFIDQP----HTTEIVSSIAKANVFFTpylgV-----------NASLP 91 
                   6667789999999999999999999****9999887.788888889999444444....66899999*********44431...........34444 PP

                   HHHHHHHH.............................SEHHHHHHHHHHHHTSCEEEEEECTTSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHH CS
  Amidohydro_1 217 hcpfsnsi.............................lrsgrealrkaldeGvkvglgtDgaasgnslnlleelrlalklqrgllyedeegglslke 284
                   +  +s+ +                              +++++ ++ ++d+Gv +  +tD   s   +++  +l++++ +++ l   + e+g+s++e
    KKY18741.1  92 NTLRSEKSasdprvscrlsppwlstlkasfntyptggFDDDLATVKALHDAGVDILASTD--VSVPMAEF-GGLAHGASVHHELQLFV-EAGFSPAE 184
                   4444444444444555555666777777777899999***********************..33333333.57888886666444435.777***** PP

                   HHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTT CS
  Amidohydro_1 285 alrmaTingAkalglddkvGsievGkdADlvvvdldilaafvgl 328
                   +l+ aT  +Ak +gl  + G++evGk+ADl +v++++++++  +
    KKY18741.1 185 VLKTATSVPAKRFGLG-DRGKVEVGKRADLLLVKGNPTKDIDDT 227
                   ***************8.99**************88554444333 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   6.1e-12   5.4e-08     357     450 ..     133     221 ..     118     240 .. 0.89

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 6.1e-12
  Amidohydro_3 357 stpvkellnagvkvalgsDapvgpfdpwprigaavmrktrrggevlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvldadpl 450
                   +++vk+l +agv + +++D    +  p+ ++g++  +  ++ +  l  +  +s  e+l++ T+ pAk++gl dr G +evG++ADl +   +p 
    KKY18741.1 133 LATVKALHDAGVDILASTD----VSVPMAEFGGLAHGASVHHELQLFVEAGFSPAEVLKTATSVPAKRFGLGDR-GKVEVGKRADLLLVKGNPT 221
                   5789***************....9999999999999999999867788899**********************9.***********99987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1554.33
//
Query:       KKY18742.1  [L=170]
Description: hypothetical protein UCRPC4_g04803 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1128.07
//
Query:       KKY18743.1  [L=170]
Description: hypothetical protein UCRPC4_g04804 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0031   17.0   1.3     0.0054   16.2   1.3    1.4  1  FliD_C           Flagellar hook-associated protein 2 C-termin
     0.0058   16.3   1.5       0.79    9.3   1.1    2.2  2  TPD52            Tumour protein D52 family
  ------ inclusion threshold ------
      0.014   16.0   2.1       0.06   14.0   1.5    2.0  2  FliD_N           Flagellar hook-associated protein 2 N-termin
      0.018   15.2   5.2        0.9    9.7   1.9    2.2  2  Fib_alpha        Fibrinogen alpha/beta chain family
      0.018   15.3   1.1      0.018   15.3   1.1    1.9  2  Osmo_CC          Osmosensory transporter coiled coil
      0.023   14.8   1.8      0.039   14.1   0.9    1.7  2  DUF1033          Protein of unknown function (DUF1033)
      0.024   14.0   2.3       0.03   13.7   2.3    1.2  1  FAM76            FAM76 protein
      0.024   14.3   1.8      0.026   14.2   0.7    1.6  2  RPW8             Arabidopsis broad-spectrum mildew resistance
      0.036   13.9   4.0       0.52   10.1   0.8    2.1  2  zf-CpG_bind_C    CpG binding protein zinc finger C terminal d
      0.058   12.9   1.8      0.087   12.4   0.3    2.0  2  Imm70            Immunity protein 70
      0.075   12.9   2.8       0.18   11.7   0.9    2.2  2  Prefoldin        Prefoldin subunit
        0.1   12.6   0.8       0.24   11.4   0.4    1.7  2  DUF1664          Protein of unknown function (DUF1664)
       0.13   12.6   2.5       0.16   12.3   0.4    2.1  2  BLOC1_2          Biogenesis of lysosome-related organelles co
       0.14   12.7   4.0       0.65   10.6   2.0    2.1  2  DUF2408          Protein of unknown function (DUF2408)
       0.15   12.1   2.4        3.8    7.5   0.3    2.6  2  DUF4298          Domain of unknown function (DUF4298)
       0.21   12.3   3.4        2.5    8.8   0.2    2.9  3  Ribosomal_S20p   Ribosomal protein S20
       0.26   11.4   1.7       0.71   10.0   0.2    1.9  2  Cob_adeno_trans  Cobalamin adenosyltransferase
       0.27   11.3   4.2       0.47   10.5   0.7    2.3  2  Laminin_II       Laminin Domain II
       0.27   10.2   7.0       0.52    9.3   2.2    2.0  2  DUF3818          Domain of unknown function in PX-proteins (D
       0.36   10.4   7.2       0.11   12.1   3.8    1.8  2  Snf7             Snf7
        1.7    9.1   9.6       0.58   10.6   5.2    2.3  2  GPS2_interact    G-protein pathway suppressor 2-interacting d


Domain annotation for each model (and alignments):
>> FliD_C  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.3   6.3e-06    0.0054     165     221 ..      89     144 ..      42     161 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.3e-06
                 .....SXSHHHHHHHHHHHHHSTT.SHHHHHHHHXXXXHHHHHHHHHHHHHCHHHHH CS
      FliD_C 165 ktvtsdsglatrlenllksyvkssngtlqtasknltkqikdldkkiedldkrletle 221
                 +   + +gl+t l+n++ ++ +++ + ++t+++ l++qi+++dk+ie++d  +++  
  KKY18743.1  89 ILESHAKGLITPLRNAVLQTAEAD-TPIRTDNELLQEQIQKVDKQIEKIDTLIKKVD 144
                 5567899*************9555.55555555555555555555555555444432 PP

>> TPD52  Tumour protein D52 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.014        12     117     145 ..      18      49 ..       5      62 .. 0.78
   2 !    9.3   1.1   0.00092      0.79      27      77 ..     117     167 ..     101     170 .] 0.87

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.014
       TPD52 117 klgdmrnsptFkSfEekve...tlkskvggtk 145
                  l++++n   F+ fEe ++    ++ k+  ++
  KKY18743.1  18 ALQELKNHDCFRGFEEALDdlrEIRPKLEEAQ 49 
                 57789************995656666665555 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00092
       TPD52  27 eereeLkseLakleeeivtLrqvLaakekhlaelkrklGltalneLrqnls 77 
                 +++e L+++++k++++i  +  ++   +k +++ kr +G ++ ++Lr+  s
  KKY18743.1 117 TDNELLQEQIQKVDKQIEKIDTLIKKVDKFITKTKRSYGKSLRQKLRRRQS 167
                 678999***********************************9999998765 PP

>> FliD_N  Flagellar hook-associated protein 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.8   1.6e+03      32      52 ..      33      53 ..      28      78 .. 0.69
   2 ?   14.0   1.5   7.1e-05      0.06      19      53 ..     116     153 ..     101     167 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.8
                XXHHHHHHHHHHHHHHHHHHH CS
      FliD_N 32 wkqsayrelnsklsnlksals 52
                +  +++re++ kl++ ++++ 
  KKY18743.1 33 EALDDLREIRPKLEEAQKKAR 53
                556777777777777777663 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 7.1e-05
                 XXXX..XXXXXXXXXXXHHHHHHHHHHHHHHHHHHH.H CS
      FliD_N  19 kldk..leqkktklewkqsayrelnsklsnlksals.a 53 
                 + d+  l+++ +k++++++++ +l +k+++++++++ +
  KKY18743.1 116 RTDNelLQEQIQKVDKQIEKIDTLIKKVDKFITKTKrS 153
                 4555679**************************99622 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0089       7.6      33      84 ..      34      87 ..      27     110 .. 0.78
   2 ?    9.7   1.9    0.0011       0.9      24      69 ..     120     166 ..     110     168 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0089
                CCHHHCCCCCCCCCCCCH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha 33 vkkdlekleneleeisns..tkeaeelvkeikdslrekqkskkdndnvikkssk 84
                  +dl++++ +lee++++  tk+ e+ vk+ +d + ++q++++++   ++++s+
  KKY18743.1 34 ALDDLREIRPKLEEAQKKarTKTLEDFVKDPDDNWCDEQEEADNHVWHLNNLSN 87
                56799999****99987533788999*******999999999976555555544 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0011
                 HCCCCCCCCCCHHHCCCCCCCCCCCCH.HHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  24 dlllkyekdvkkdlekleneleeisns.tkeaeelvkeikdslrekq 69 
                 +ll+++ ++v+k++ek+   ++++ +  tk+ +++ k+++++lr++q
  KKY18743.1 120 ELLQEQIQKVDKQIEKIDTLIKKVDKFiTKTKRSYGKSLRQKLRRRQ 166
                 45666666666666666666666666513333445566666666555 PP

>> Osmo_CC  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1         6   5.1e+03      19      33 ..      33      47 ..      28      55 .. 0.56
   2 ?   15.3   1.1   2.1e-05     0.018       8      34 ..     120     164 ..     117     168 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 6
                HHHHHHHHHHHHHHH CS
     Osmo_CC 19 qkvedideeIaaLee 33
                + ++d+ e   +Lee
  KKY18743.1 33 EALDDLREIRPKLEE 47
                445555443344554 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.1e-05
                 XXXXXXXTHHHHHHHHHHHHHHHHHH..................H CS
     Osmo_CC   8 elLqehYdnIEqkvedideeIaaLee..................k 34 
                 elLqe+ +++ +++e id+ I++  +                  +
  KKY18743.1 120 ELLQEQIQKVDKQIEKIDTLIKKVDKfitktkrsygkslrqklrR 164
                 9**********************9999988866666665555544 PP

>> DUF1033  Protein of unknown function (DUF1033)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.9   4.6e-05     0.039      23      79 ..      21      75 ..      14      99 .. 0.80
   2 ?   -0.8   0.0         2   1.7e+03      40      84 ..     122     166 ..     102     170 .] 0.62

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.6e-05
     DUF1033 23 diveekefdefeealkyykkeWqklkeeyksiksksnllaafWeeedkrWceecded 79
                ++++++ f  feeal+  ++   kl+e     k+++++l  f ++ d++Wc+e +e 
  KKY18743.1 21 ELKNHDCFRGFEEALDDLREIRPKLEEAQ--KKARTKTLEDFVKDPDDNWCDEQEEA 75
                5677888999999*999999999998875..5678889*************998764 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2
     DUF1033  40 ykkeWqklkeeyksiksksnllaafWeeedkrWceecdedlqqyk 84 
                  +++ qk++++ ++i++  + +  f  ++++ + +   ++l++ +
  KKY18743.1 122 LQEQIQKVDKQIEKIDTLIKKVDKFITKTKRSYGKSLRQKLRRRQ 166
                 455566666666666666666666666666666555555555555 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.3   3.5e-05      0.03     207     269 ..     103     164 ..      27     168 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.5e-05
       FAM76 207 kksldsnssdhlvavtq..Lkeeiaslkkqleqkdqellekdkkitelkaellekekelreklke 269
                 ++ l+++  d  +   +  L+e+i++  kq+e+ d+ + + dk it+ k    +   +lr+kl++
  KKY18743.1 103 NAVLQTAEADTPIRTDNelLQEQIQKVDKQIEKIDTLIKKVDKFITKTKRSYGK---SLRQKLRR 164
                 33666666676666543349**************************99876543...34444443 PP

>> RPW8  Arabidopsis broad-spectrum mildew resistance protein RPW8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.1   3.5e+03      41      50 ..      38      47 ..      17      58 .. 0.58
   2 ?   14.2   0.7     3e-05     0.026      13      83 ..      82     151 ..      80     168 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.1
        RPW8 41 leritPvvke 50
                l +i+P ++e
  KKY18743.1 38 LREIRPKLEE 47
                2333333332 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3e-05
        RPW8  13 lgellkaileakkksldfksilkrLestleritPvvkeieklnkeldrpreeieeLkklLekaekLVekcs 83 
                 l++l ++ile + k l + +  +   +t e+ tP++++ e l++++++ +++ie++  l++k  k + k  
  KKY18743.1  82 LNNLSNLILESHAKGLIT-PLRNAVLQTAEADTPIRTDNELLQEQIQKVDKQIEKIDTLIKKVDKFITKTK 151
                 678889999999999999.8889999999999999999999999999999999999999999999999865 PP

>> zf-CpG_bind_C  CpG binding protein zinc finger C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.018        15       6      72 ..      12      74 ..       8      90 .. 0.72
   2 ?   10.1   0.8   0.00061      0.52      19      65 ..     107     153 ..      93     167 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.018
  zf-CpG_bind_C  6 leiLpqriqewqssps.vaeeenkkklekirkeqeeakkklkelekklkkLeeliekakklslkeeee 72
                      Lp+ +qe +++ +    ee    l++ir + eea+kk     +++k+Le+++++  +  ++e+ee
     KKY18743.1 12 KDRLPDALQELKNHDCfRGFEEALDDLREIRPKLEEAQKK-----ARTKTLEDFVKDPDDNWCDEQEE 74
                   5679999999999999544566678889999888888775.....45566677776666665555554 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00061
  zf-CpG_bind_C  19 spsvaeeenkkklekirkeqeeakkklkelekklkkLeeliekakkl 65 
                    + ++a++ +++  e ++++ +++ k+++++++  kk++++i+k+k++
     KKY18743.1 107 QTAEADTPIRTDNELLQEQIQKVDKQIEKIDTLIKKVDKFITKTKRS 153
                    45667777777777777777777777777777777777777777765 PP

>> Imm70  Immunity protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3    0.0001     0.087      50     130 ..      35     116 ..      14     117 .. 0.85
   2 ?   -0.7   0.1       1.1   9.3e+02      46      69 ..     119     142 ..     116     154 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
       Imm70  50 vddlekaeaeLkeirkelkklppekviwdiddl..dkkPPWgssiaksitslseyFvtsdgkdllkvlrealevakekkldvk 130
                  ddl +++  L+e +k+ ++++ e+++ d dd   d++   +++ + ++++ls+  ++s  k l++ lr+a+ ++ e  ++++
  KKY18743.1  35 LDDLREIRPKLEEAQKKARTKTLEDFVKDPDDNwcDEQEE-ADNHVWHLNNLSNLILESHAKGLITPLRNAVLQTAEADTPIR 116
                 5789999999*******************98862244444.66667777**********************999988888775 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.1
       Imm70  46 gelsvddlekaeaeLkeirkelkk 69 
                 +el  ++++k+ +++++i   +kk
  KKY18743.1 119 NELLQEQIQKVDKQIEKIDTLIKK 142
                 677778888888888888776665 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.59   5.1e+02      97     113 ..      35      51 ..      14      61 .. 0.56
   2 ?   11.7   0.9   0.00021      0.18       6      34 ..     120     148 ..     115     161 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.59
                 HHHHHHHHHHHHHHHHH CS
   Prefoldin  97 eeeleklkdqittlean 113
                  ++l++++ ++++++++
  KKY18743.1  35 LDDLREIRPKLEEAQKK 51 
                 22222222222222222 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00021
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
   Prefoldin   6 eslqaelaqlkeaieelektletlktlkk 34 
                 e lq+++++++++ie+++++++ ++++++
  KKY18743.1 120 ELLQEQIQKVDKQIEKIDTLIKKVDKFIT 148
                 77999999999999999999999999988 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.8   2.4e+03      88      99 ..      37      48 ..      12      68 .. 0.58
   2 ?   11.4   0.4   0.00028      0.24      56      95 ..     114     153 ..      94     164 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.8
     DUF1664 88 evtevredlsei 99
                ++ e+r +l+e 
  KKY18743.1 37 DLREIRPKLEEA 48
                333333333332 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00028
     DUF1664  56 slaatkrhLssridrvdkkldeqkeiskeikeevtevred 95 
                  +++  + L+++i++vdk++++   ++k++++ +t+ ++ 
  KKY18743.1 114 PIRTDNELLQEQIQKVDKQIEKIDTLIKKVDKFITKTKRS 153
                 5667777899999999999999999999999999988765 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       1.8   1.5e+03      71      71 ..      51      51 ..      18      75 .. 0.56
   2 ?   12.3   0.4   0.00019      0.16      64      90 ..     123     149 ..     107     155 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.8
     BLOC1_2 71 e 71
                +
  KKY18743.1 51 K 51
                1 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00019
     BLOC1_2  64 lqqidqiekqvteLeeavseLDeyske 90 
                  +qi++++kq++++ ++++++D+++++
  KKY18743.1 123 QEQIQKVDKQIEKIDTLIKKVDKFITK 149
                 479999****************99876 PP

>> DUF2408  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.33   2.8e+02      92     124 ..      20      47 ..       6      49 .. 0.74
   2 ?   10.6   2.0   0.00076      0.65       9      70 ..      91     152 ..      48     165 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.33
     DUF2408  92 edlkaqdgeekkvasslqpiYdrLleikttLen 124
                 ++lk++     +    +++  d+L ei+ +Le+
  KKY18743.1  20 QELKNH-----DCFRGFEEALDDLREIRPKLEE 47 
                 444444.....5677899999999999999996 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00076
     DUF2408   9 epiyekLvsirrsLlslaakskaeeakeseevkeelkelkeeLkkieskrdeegkFkseegk 70 
                 e+  + L++ +r+ +   a+++++  +++e ++e+++++ ++++ki++  ++ +kF+++ ++
  KKY18743.1  91 ESHAKGLITPLRNAVLQTAEADTPIRTDNELLQEQIQKVDKQIEKIDTLIKKVDKFITKTKR 152
                 4445557776666666666666666777777*****************999999**887664 PP

>> DUF4298  Domain of unknown function (DUF4298)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.061        52       8      32 ..      28      52 ..      23      79 .. 0.63
   2 ?    7.5   0.3    0.0045       3.8      13      42 ..     121     150 ..     115     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.061
                HHHHHHHHHHHHHHHHHHHHTHHHH CS
     DUF4298  8 ldeisallqqLeealeqwkklqkkl 32
                ++ ++++l++L e   +++++qkk 
  KKY18743.1 28 FRGFEEALDDLREIRPKLEEAQKKA 52
                5555666666666666666666553 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0045
                 HHHHHHHHHHHHHHHTHHHHHHHHHHHTSH CS
     DUF4298  13 allqqLeealeqwkklqkklakLdeYYqse 42 
                  l++q++++ +q++k+++ ++k+d++ +++
  KKY18743.1 121 LLQEQIQKVDKQIEKIDTLIKKVDKFITKT 150
                 578999999999999999999999997554 PP

>> Ribosomal_S20p  Ribosomal protein S20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       1.9   1.6e+03      57      62 ..      46      51 ..      17      78 .. 0.66
   2 ?    8.8   0.2    0.0029       2.5      16      58 ..      83     135 ..      77     149 .. 0.75
   3 ?    4.1   0.5     0.085        73      26      50 ..     135     159 ..     132     167 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.9
                    HHHHCT CS
  Ribosomal_S20p 57 dkaakk 62
                      a kk
      KKY18743.1 46 EEAQKK 51
                    222222 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0029
                     HHHHHHHHHHHHHHHHHHHHHHHHC..........-HHHHHHHHHHHHHHHHH CS
  Ribosomal_S20p  16 rrlrNrsyksavrtaiKkvraaiea..........dkekaqealkkaiskidk 58 
                     ++l N    s ++ +i  +r+a+ +          d+e +qe+++k+ ++i k
      KKY18743.1  83 NNLSNLILESHAKGLITPLRNAVLQtaeadtpirtDNELLQEQIQKVDKQIEK 135
                     79999999***************663666555555555577777777666655 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.085
                     HHHHHHHHHHHHHHC-HHHHHHHHH CS
  Ribosomal_S20p  26 avrtaiKkvraaieadkekaqealk 50 
                     ++ t+iKkv + i+++k +  ++l+
      KKY18743.1 135 KIDTLIKKVDKFITKTKRSYGKSLR 159
                     567999*****99777766666555 PP

>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.53   4.5e+02      57     110 ..      38      90 ..       8     107 .. 0.48
   2 ?   10.0   0.2   0.00083      0.71      77     115 ..     115     153 ..      92     164 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.53
                      HHHHHHHHHHHHHHHHT.-BTCCG-S--HHHH.....HH..HHHHHHHHHHHS--EESEEE CS
  Cob_adeno_trans  57 LeeiqneLfdlgaelatpekkkekkkiteeev.....ee..lekeideleaelpplksfil 110
                      L+ei  +L +++++  t+          e+ v     ++   ++e d+   +l++l++ il
       KKY18743.1  38 LREIRPKLEEAQKKARTK--------TLEDFVkdpddNWcdEQEEADNHVWHLNNLSNLIL 90 
                      333333333333333322........11221211111220012223333344445555555 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00083
                      TCCG-S--HHHHHHHHHHHHHHHHHS--EESEEES-SSH CS
  Cob_adeno_trans  77 kkekkkiteeeveelekeideleaelpplksfilpggsp 115
                       ++++++ +e++++++k+i+++++ ++++++fi  +++ 
       KKY18743.1 115 IRTDNELLQEQIQKVDKQIEKIDTLIKKVDKFITKTKRS 153
                      45566777888**********************988754 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2      0.22   1.9e+02      17      71 ..      36      89 ..      12      94 .. 0.50
   2 ?   10.5   0.7   0.00055      0.47      10      61 ..     103     154 ..      94     164 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.22
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTT CS
  Laminin_II 17 eqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqL 71
                ++l ++  +le+ ++k+ +   + + +++  ++     ++A + v +L++l + +
  KKY18743.1 36 DDLREIRPKLEEAQKKARTKTLE-DFVKDPDDNWCDEQEEADNHVWHLNNLSNLI 89
                33333333333333333322222.1222222234444455555555555555555 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00055
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II  10 etakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsv 61 
                 + + ++ e  +p+ ++ e ++e+++++++++e+++ ++k+  k i   +rs 
  KKY18743.1 103 NAVLQTAEADTPIRTDNELLQEQIQKVDKQIEKIDTLIKKVDKFITKTKRSY 154
                 56667778889999999**********************9999999888875 PP

>> DUF3818  Domain of unknown function in PX-proteins (DUF3818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.2     0.022        19     114     168 ..      36      95 ..      19     113 .. 0.63
   2 ?    9.3   2.2   0.00061      0.52     105     143 ..     115     154 ..      97     168 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.022
     DUF3818 114 keikelekkidk..seelieklkkfveaseeeqeeireeseee..kl.dllvvilrseel 168
                 ++++e++ k+++  ++  ++ l++fv++++++  + +ee++++  +l +l  +il+s+  
  KKY18743.1  36 DDLREIRPKLEEaqKKARTKTLEDFVKDPDDNWCDEQEEADNHvwHLnNLSNLILESHAK 95 
                 444555555555545555999********9965555555544311334666666666555 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00061
     DUF3818 105 lnedlkelekeikelekkidkseelieklkkfveasee.e 143
                 ++ d + l+++i++++k+i+k ++li+k++kf+ ++++  
  KKY18743.1 115 IRTDNELLQEQIQKVDKQIEKIDTLIKKVDKFITKTKRsY 154
                 56788899*************************9997633 PP

>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.7   1.4e+03      62      73 ..      40      51 ..      28      77 .. 0.53
   2 ?   12.1   3.8   0.00013      0.11       6      45 ..     122     156 ..     110     168 .. 0.58

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.7
                HHHHHHHHHHHH CS
        Snf7 62 nqlanleqvsla 73
                + + +le+++ +
  KKY18743.1 40 EIRPKLEEAQKK 51
                222222222222 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00013
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH CS
        Snf7   6 Lrkaerkldkkqeslekkikkleaelkklakkgnkdrall 45 
                 L+++++k+dk++e++++ ikk+++ + k++++       +
  KKY18743.1 122 LQEQIQKVDKQIEKIDTLIKKVDKFITKTKRS-----YGK 156
                 56666666666666666666666666666555.....333 PP

>> GPS2_interact  G-protein pathway suppressor 2-interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1       1.7   1.5e+03      50      67 ..      35      52 ..      30      76 .. 0.60
   2 ?   10.6   5.2   0.00068      0.58      19      55 ..     109     145 ..      97     167 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.7
  GPS2_interact 50 iskLkkkqkeleeeaakp 67
                   +  L++ + +lee+ +k 
     KKY18743.1 35 LDDLREIRPKLEEAQKKA 52
                   556666666666655544 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00068
  GPS2_interact  19 eqelvpsrlsKdeLlqnidkvDREiakveqqiskLkk 55 
                     ++ +p r+  + L ++i+kvD+ i k+++ i+k  k
     KKY18743.1 109 AEADTPIRTDNELLQEQIQKVDKQIEKIDTLIKKVDK 145
                    34556888888877789*************9999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1718  (0.0958224); expected 358.6 (0.02)
Passed bias filter:                      806  (0.0449551); expected 358.6 (0.02)
Passed Vit filter:                       117  (0.00652574); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 1083.16
//
Query:       KKY18744.1  [L=420]
Description: hypothetical protein UCRPC4_g04805 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0039   17.2   1.0      0.027   14.5   0.1    2.7  3  Suppressor_APC  Adenomatous polyposis coli tumour suppressor 
  ------ inclusion threshold ------
       0.19   11.8   2.6       0.44   10.7   0.2    2.6  2  bZIP_2          Basic region leucine zipper


Domain annotation for each model (and alignments):
>> Suppressor_APC  Adenomatous polyposis coli tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.21   1.8e+03      35      55 ..     140     160 ..     138     182 .. 0.76
   2 ?   -1.9   0.1      0.41   3.7e+03      54      71 ..     259     276 ..     243     284 .. 0.67
   3 !   14.5   0.1     3e-06     0.027       6      61 ..     362     417 ..     358     419 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.21
  Suppressor_APC  35 qlrevqerqkslgkvetqfdl 55 
                     +lr +q+r  sl++++++++ 
      KKY18744.1 140 PLRPLQKRRPSLPEIRNKKSA 160
                     588899********9995554 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.41
  Suppressor_APC  54 dlqtdliqerlefelari 71 
                       q +++ e+l+ e +ri
      KKY18744.1 259 HSQKEATAEKLQEENNRI 276
                     456666666666666666 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 3e-06
  Suppressor_APC   6 krlkeLeqekdlLlqgLeaveraRdWylqqlrevqerqkslgkvetqfdlqtdliq 61 
                      +++ L  e  +L   + ++e +R  y++  +++q+++k+++ +   +  + d+ q
      KKY18744.1 362 EHIQFLSTENVALKTQITRMEGERTFYRDGYHGLQNKMKQISSLYRVMGTFLDADQ 417
                     6899999**********************************998877777777766 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2      0.12   1.1e+03      31      44 ..     263     276 ..     254     282 .. 0.80
   2 ?   10.7   0.2   4.9e-05      0.44      27      52 ..     357     382 ..     355     384 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHH CS
      bZIP_2  31 eervkeLeeeNaqL 44 
                 e ++++L+eeN+++
  KKY18744.1 263 EATAEKLQEENNRI 276
                 66788999999987 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 4.9e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  27 eeeleervkeLeeeNaqLrqkveqLe 52 
                 e++lee +++L++eN +L+ ++  +e
  KKY18744.1 357 EKSLEEHIQFLSTENVALKTQITRME 382
                 789*******************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       990  (0.0552178); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.51
# Mc/sec: 2482.56
//
Query:       KKY18745.1  [L=372]
Description: putative peptidyl-prolyl cis-trans isomerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-49  167.1   0.2    5.6e-49  166.4   0.2    1.3  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso
    4.1e-06   26.5   3.1       0.23   11.7   0.0    3.5  3  TPR_2          Tetratricopeptide repeat
     0.0013   18.4   0.2       0.12   12.0   0.2    2.7  2  TPR_11         TPR repeat
     0.0048   16.7   4.6        1.6    8.7   0.0    3.6  4  TPR_1          Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.019   15.2   2.2        5.4    7.5   0.0    4.2  4  TPR_8          Tetratricopeptide repeat
      0.036   14.7   0.3        5.2    7.8   0.1    2.8  2  TPR_16         Tetratricopeptide repeat
      0.063   13.6   0.2         12    6.2   0.0    2.4  2  TPR_12         Tetratricopeptide repeat
      0.067   13.3   0.0        4.2    7.6   0.0    2.3  2  TPR_9          Tetratricopeptide repeat
       0.13   12.1   0.1        0.2   11.4   0.1    1.3  1  DUF5113        Domain of unknown function (DUF5113)


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4   0.2   2.8e-52   5.6e-49       2     157 ..      13     174 ..      12     175 .. 0.90

  Alignments for each domain:
  == domain 1  score: 166.4 bits;  conditional E-value: 2.8e-52
  Pro_isomerase   2 vdietss..kGrivieLfadkaPktvenFlklvkeg...........fYdgttFhRvikgfmvqgGdptgktsageqe.kkggesiraipdEitsk 83 
                    +die+++  +Griv+eLf+d +Pkt+enF++l+ +g            Y+g++FhRvik fm+qgGd+t+ +  g++  +  g   ++++dE+ ++
     KKY18745.1  13 FDIEIGKkpQGRIVFELFSDVVPKTAENFRALC-TGekglgksgkqlSYRGSIFHRVIKSFMIQGGDFTAFN--GTGGeSIYG---EKFEDEN-FE 101
                    7889977889***********************.5557888889999********************99984..453323334...69*****.89 PP

  Pro_isomerase  84 lkh.krGalamartgkepnsagsqFfItlkeaphldgkytvFGkVveGmdvvekiekvetdeerpkknvkivsae 157
                    lkh ++++l+ma++g  p ++gsqFf+t+ ++phldgk++vFG+V++G ++v++ie+++t++++p+++v++v+++
     KKY18745.1 102 LKHdRPFLLSMANSG--PATNGSQFFVTTVPTPHLDGKHVVFGEVINGKNLVRNIESLPTQSDKPQQDVTVVDCG 174
                    999788********8..8*******************************************************97 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.3   0.00067       1.3       8      30 ..     223     245 ..     216     249 .. 0.87
   2 ?    4.4   0.0     0.025        50       3      23 ..     271     291 ..     269     293 .. 0.87
   3 !   11.7   0.0   0.00011      0.23       1      34 []     309     342 ..     309     342 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00067
       TPR_2   8 GlayyklgdyeeAleafekAlel 30 
                 G+ ++k+gd+e  +e ++kAl++
  KKY18745.1 223 GNKAFKSGDLETGIEKYQKALRY 245
                 8889*****************97 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.025
       TPR_2   3 alynlGlayyklgdyeeAlea 23 
                 ++ n +l++ k+++y+eA+++
  KKY18745.1 271 LHSNSALLAVKSKRYNEAEKW 291
                 578889999*********997 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00011
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 a++++++Gla+  l+d e+ l+++e A + +P++
  KKY18745.1 309 AKIYFRRGLAHVGLKDQEDGLKDLEIAAKFAPGD 342
                 789**************************99976 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.2   6.2e-05      0.12       1      23 [.     223     245 ..     223     252 .. 0.90
   2 ?    3.5   0.0     0.028        56      24      39 ..     305     320 ..     304     323 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.2e-05
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkl 23 
                 G+  ++ G++e  ie+Y+kAl++
  KKY18745.1 223 GNKAFKSGDLETGIEKYQKALRY 245
                 88889****************97 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.028
      TPR_11  24 dPdnaeayynLGlayy 39 
                 d d a +y+ +Gla+ 
  KKY18745.1 305 DTDKAKIYFRRGLAHV 320
                 5689**********96 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1         5     1e+04      21      29 ..     210     218 ..     210     221 .. 0.57
   2 !    6.0   0.1    0.0055        11       8      29 ..     223     244 ..     223     248 .. 0.88
   3 ?    1.8   0.0      0.12   2.5e+02       4      22 ..     272     290 ..     270     292 .. 0.84
   4 !    8.7   0.0   0.00079       1.6       1      33 [.     309     341 ..     309     342 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5
                 HHHHHHHHH CS
       TPR_1  21 leyyekALe 29 
                 +eyy+ A e
  KKY18745.1 210 IEYYRIASE 218
                 567765544 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0055
                 HHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyekALe 29 
                 Gn  fk g+++  +e y+kAL+
  KKY18745.1 223 GNKAFKSGDLETGIEKYQKALR 244
                 7778999999999999999996 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.12
                 HHHHHHHHHHTT-HHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAle 22 
                 + n +++  k ++y+eA++
  KKY18745.1 272 HSNSALLAVKSKRYNEAEK 290
                 66778889999******97 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.00079
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPn 33 
                 ak+++++G+a+  l++ ++ l++ e A +  P 
  KKY18745.1 309 AKIYFRRGLAHVGLKDQEDGLKDLEIAAKFAPG 341
                 899********************9999888885 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.7   3.3e+03       4      17 ..     212     225 ..     211     226 .. 0.84
   2 ?    1.0   0.1      0.33   6.6e+02      12      29 ..     227     244 ..     226     245 .. 0.87
   3 ?    2.0   0.0      0.16   3.2e+02       6      23 ..     274     291 ..     270     293 .. 0.85
   4 ?    7.5   0.0    0.0027       5.4       1      28 [.     309     336 ..     301     342 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.7
                 HHHHHHHHHHTT-H CS
       TPR_8   4 yynlgsiylklgdy 17 
                 yy+++s +++ g++
  KKY18745.1 212 YYRIASELKEFGNK 225
                 89999999988875 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.33
                 HHTT-HHHHHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyekale 29 
                 +k gd+e  +e y+kal+
  KKY18745.1 227 FKSGDLETGIEKYQKALR 244
                 5789************97 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.16
                 HHHHHHHHTT-HHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkey 23 
                 n +++  k ++y+eA+++
  KKY18745.1 274 NSALLAVKSKRYNEAEKW 291
                 66889999*******986 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0027
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekal 28 
                 a++y++ g+++  l+d e   + +e a 
  KKY18745.1 309 AKIYFRRGLAHVGLKDQEDGLKDLEIAA 336
                 5678888888888888777777666555 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.024        48      11      55 ..     237     290 ..     227     293 .. 0.69
   2 ?    7.8   0.1    0.0026       5.2       4      68 .]     276     343 ..     273     343 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.024
      TPR_16  11 gdyddAaaaleaalkrdpssPd.........aaeAllllgdaalrqgrlaeAaa 55 
                  +y++A+++l+++++ +  +P          +   + +++++a + +r+ eA+ 
  KKY18745.1 237 EKYQKALRYLNEYTETGENDPKelgaqmkqlRFSLHSNSALLAVKSKRYNEAEK 290
                 589999999999999999999866666665555555555555555566666655 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0026
      TPR_16   4 araalragdyddAaa..al.eaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapdap 68 
                 a++a+++++y +A++   +   a+ +d ++ d a  ++ +g+a+  +++ ++ +  ++ a++ ap+++
  KKY18745.1 276 ALLAVKSKRYNEAEKwaTFgIDAITDDTKDTDKAKIYFRRGLAHVGLKDQEDGLKDLEIAAKFAPGDA 343
                 566666777777775223344566666677779*********************9999999****985 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.015        29      52      73 ..     230     251 ..     226     255 .. 0.77
   2 ?    6.2   0.0    0.0061        12       5      62 ..     271     326 ..     267     333 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.015
      TPR_12  52 grlyralgryeeAlelleeala 73 
                 g+l    ++y++Al++l+e ++
  KKY18745.1 230 GDLETGIEKYQKALRYLNEYTE 251
                 5666677899999999999876 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0061
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgrye 62 
                 +++n a++  + +ry eA+++    +++++   +++  + a +++  g ++  l+++e
  KKY18745.1 271 LHSNSALLAVKSKRYNEAEKWATFGIDAIT--DDTKDTDKAKIYFRRGLAHVGLKDQE 326
                 567899999999**********99999995..55888899999999999999888876 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.042        84      36      63 ..     230     257 ..     227     268 .. 0.78
   2 ?    7.6   0.0    0.0021       4.2      29      63 ..     309     343 ..     305     352 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.042
       TPR_9  36 GlllaqlGclsaAladLeaylalapdap 63 
                 G l+   + +++Al+ L+ y +  +++p
  KKY18745.1 230 GDLETGIEKYQKALRYLNEYTETGENDP 257
                 6677778999**********97766554 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0021
       TPR_9  29 peerrdRGlllaqlGclsaAladLeaylalapdap 63 
                 +  ++ RGl+++ l + + +l+dLe ++  ap ++
  KKY18745.1 309 AKIYFRRGLAHVGLKDQEDGLKDLEIAAKFAPGDA 343
                 566788***********************999543 PP

>> DUF5113  Domain of unknown function (DUF5113)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1    0.0001       0.2       4      47 ..     212     255 ..     210     279 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0001
     DUF5113   4 llqiandYanlayylnvegeyeeALeyldsaleylNahyekYak 47 
                 +++ia++ ++ +++++ +g+ e+ +e  ++al+ylN++ e+  +
  KKY18745.1 212 YYRIASELKEFGNKAFKSGDLETGIEKYQKALRYLNEYTETGEN 255
                 799**********************************9886555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2501.39
//
Query:       KKY18746.1  [L=407]
Description: putative formamidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.7e-178  590.9   0.0   9.9e-178  590.7   0.0    1.0  1  FmdA_AmdA  Acetamidase/Formamidase family


Domain annotation for each model (and alignments):
>> FmdA_AmdA  Acetamidase/Formamidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  590.7   0.0  5.5e-182  9.9e-178       1     373 []      10     389 ..      10     389 .. 0.99

  Alignments for each domain:
  == domain 1  score: 590.7 bits;  conditional E-value: 5.5e-182
   FmdA_AmdA   1 kvdlskpaaeqeeklhNRwHpdipavaevkpgetvkvecldwtdgqiknndsaddvrtvdlkkvHeltgPvevegAepGDllvveildievleeaewGy 99 
                 kvdl+kpaaeq ++lhNRwHpdip++ ++k+ge+vk+ec+dwt+gqi+n+dsa+d+++vdl+k+H+l+gP+e+e+AepGD+lvvei+d+++++ea+wG+
  KKY18746.1  10 KVDLNKPAAEQ-PQLHNRWHPDIPFCGTIKNGEVVKIECVDWTGGQIGNDDSAEDMANVDLTKIHYLSGPFEIETAEPGDVLVVEIQDVQPMQEAPWGF 107
                 6899*******.8************************************************************************************** PP

   FmdA_AmdA 100 tgifdkenggGflkdafpeaakaiwdlegiyassrqipgvrfrglphpGllGtapskelldswnareeeliek....ralallpepkeallgklee.ea 193
                 tg+f+kenggGfl+  +p++akaiwd+egi++ssr+ip+vrf+gl+hpG+lG+aps+e+l++wn+re eli++    r +a++p+p ++++g++++ ++
  KKY18746.1 108 TGVFSKENGGGFLDYLYPKPAKAIWDFEGIFCSSRHIPHVRFAGLIHPGILGCAPSHEVLAEWNKREGELIAAntldRIVAQPPQPVNVHAGAADDaTK 206
                 ************************************************************************9999999***************777** PP

   FmdA_AmdA 194 ekvaaegartvppr.engGnmDiknlsrGskvylPVkveGaklsvGDlHfsqGDGEisfcgaiemsgvvtlkvevikggmeklgiknpiflpeevepry 291
                 ekv++egart+p+r e+gGn+DiknlsrGskvylPV+v+Gak+svGDlHfsqGDGEisfcgaiem+gv+t+k++v+k+gm++lg+k+pif p++v+p++
  KKY18746.1 207 EKVGKEGARTIPGRpEHGGNCDIKNLSRGSKVYLPVHVKGAKFSVGDLHFSQGDGEISFCGAIEMAGVITIKFNVMKNGMAELGMKSPIFFPGPVQPQF 305
                 *************************************************************************************************** PP

   FmdA_AmdA 292 ..seylsfeGisvdesgkqhyldltvAyrnallraieyLkkfGytkeqaylllsvapvegrisgivdiPnvvatlalPldiFdf 373
                    ++l+feG+svde+gkqh+ld+tvAyr++ lr+ieyLk++Gy+++q+yllls+apveg+++givdiPn+++t+ lP+diFdf
  KKY18746.1 306 gpGRMLYFEGFSVDENGKQHFLDTTVAYRQTTLRVIEYLKRYGYDDYQIYLLLSCAPVEGHVAGIVDIPNACTTMGLPIDIFDF 389
                 999*******************************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.50
# Mc/sec: 2433.73
//
Query:       KKY18747.1  [L=195]
Description: putative d-tyrosyl-trna deacylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-54  183.1   0.0      5e-54  182.7   0.0    1.1  1  Tyr_Deacylase  D-Tyr-tRNA(Tyr) deacylase


Domain annotation for each model (and alignments):
>> Tyr_Deacylase  D-Tyr-tRNA(Tyr) deacylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.7   0.0   2.8e-58     5e-54       1     144 []       2     147 ..       2     147 .. 0.96

  Alignments for each domain:
  == domain 1  score: 182.7 bits;  conditional E-value: 2.8e-58
                    EEEEEEEEEEEEEETTEEEEEESSEEEEEEE-BTT--HHHHHHHHHHHHH-EEEEETTSS.EEEETTTTT-EEEEEE-GGGGSBTSSSSS-BGTTB CS
  Tyr_Deacylase   1 raviqrvksAsvtvegevvgsigkGllvlvgvekedteedleklakkilnlrifedeegk.mnlsvkdvggevLvVsqftLyadtrkGrrpsfhka 95 
                    +aviqrv sAsvtv++++++sigkGllv+ +++ +dt++d++++a+k+l+l+i++de+++ +++sv+d++gevL+VsqftLya+t+kG++p+fh a
     KKY18747.1   2 KAVIQRVASASVTVDKQLISSIGKGLLVFAAFGPDDTKKDADTMASKVLKLKIWPDETDSgWKRSVQDIQGEVLCVSQFTLYASTKKGNKPDFHGA 97 
                    79*************9***************************************966545*********************************** PP

                    --HHHHHHHHHHHHHHHHHCTC.TTEEE--TTS-EEEEEEEEEEEEEEEE CS
  Tyr_Deacylase  96 akpeeaeelyekfveklrerlg.ekvetGeFgadmkvslvndGPvtilld 144
                    ak+e a+ely++f++++++ ++ ekv++G+F+a+m+v +vndGPvti +d
     KKY18747.1  98 AKSEIAKELYDYFFTRVQHLYSpEKVKNGVFQAMMEVGIVNDGPVTINID 147
                    ******************9777689**********************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1265.71
//
Query:       KKY18748.1  [L=623]
Description: putative ccr4-not transcription subunit 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-78  261.9  24.5    7.1e-78  261.2  24.5    1.4  1  Not3        Not1 N-terminal domain, CCR4-Not complex componen
    2.1e-40  137.8  13.0    6.1e-40  136.3  13.0    1.8  1  NOT2_3_5    NOT2 / NOT3 / NOT5 family
  ------ inclusion threshold ------
       0.19   11.6   6.5      0.046   13.6   2.9    1.9  2  DUF2373     Uncharacterised conserved protein (DUF2373)
       0.45    9.9  13.3       0.69    9.3  12.2    1.7  1  Cluap1      Clusterin-associated protein-1
        9.5    6.6  15.7        8.3    6.8   0.6    2.8  2  DUF4200     Domain of unknown function (DUF4200)


Domain annotation for each model (and alignments):
>> Not3  Not1 N-terminal domain, CCR4-Not complex component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.2  24.5     2e-81   7.1e-78       2     231 .]       3     232 ..       2     232 .. 0.97

  Alignments for each domain:
  == domain 1  score: 261.2 bits;  conditional E-value: 2e-81
        Not3   2 krklqqeidktlkkvaegveeFdeiyeklesaenqsqkeKleadLKkeikKLqrlRdqiktwlssneikdkkkLlenrkliEeamerFkavEkesKtKa 100
                 +rk qqeidkt+kkvaeg++eFd+iyek++s++n+ qk+Kle++LK+eikKLqr+Rdqiktw++ ne+kdk++Lle+rk+iE+a    ++vEke+KtKa
  KKY18748.1   3 SRKTQQEIDKTFKKVAEGIQEFDNIYEKIYSSSNAAQKDKLEDNLKREIKKLQRFRDQIKTWAAGNEVKDKAPLLEQRKRIEKAWSISRSVEKEMKTKA 101
                 7************************************************************************************************** PP

        Not3 101 fSkeglakaaaekldpkekekeearewlkdaideLneqvekleaeieklsskkkkkkkskeka.rveeleklierhkfhieklelllrlleneelepee 198
                 +Skegl+  +++kldpkeke+ee++++l++++de+ + +e+l+ae ++l+++ kk+k++++k+ r+++++ ++er+++h +kl+lllr+l+n+++e+ +
  KKY18748.1 102 YSKEGLS--QSTKLDPKEKEREEVCDFLSEQVDEIGRILESLDAEEDTLQAAVKKNKRDSAKSdRLSDISIITERYQWHESKLQLLLRALQNGSVETAQ 198
                 *******..6678*******************************************99666667*********************************** PP

        Not3 199 vekikedieyyvesnqdedfe.edeelYddlnld 231
                 v++ikediey +++ + +dfe e+e lYdd+nld
  KKY18748.1 199 VNEIKEDIEYAIKEGNVADFEgENEALYDDFNLD 232
                 *********************8889*******97 PP

>> NOT2_3_5  NOT2 / NOT3 / NOT5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.3  13.0   1.7e-43   6.1e-40       5     131 .]     493     619 ..     489     619 .. 0.95

  Alignments for each domain:
  == domain 1  score: 136.3 bits;  conditional E-value: 1.7e-43
    NOT2_3_5   5 nspdsedaekprqyepklphptsisypqeplyeklesakkle..kldedtLFyiFYysqgtleqllAakeLkkrsWryhkelktWflreekeepkekte 101
                 + p++ dae+pr+y+p+   +t+ +ypq +l +++++++++e  ++d+dtLFyiFYy+qgt++q+lAak Lk++sWr+hk+++tWf+r+  eepk++te
  KKY18748.1 493 TAPETADAERPRHYKPQFRFNTPPHYPQDTL-PIFDDPRLYEtgRIDTDTLFYIFYYRQGTYQQYLAAKSLKSQSWRFHKQYQTWFQRH--EEPKNITE 588
                 6799*************************95.99999999885689*******************************************..******** PP

    NOT2_3_5 102 eyekgsYkyFDye.tWlkrrkkdfkleyekL 131
                 ++e+g+Y++FDye tW++rrk dfk+ y++L
  KKY18748.1 589 DFEQGTYRFFDYEsTWMNRRKADFKFVYKYL 619
                 ****************************987 PP

>> DUF2373  Uncharacterised conserved protein (DUF2373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   2.9   1.3e-05     0.046       2      39 ..     556     592 ..     555     601 .. 0.79
   2 ?   -3.2   0.1       2.3   8.1e+03      36      47 ..     610     621 ..     608     621 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.3e-05
     DUF2373   2 YLiqfykdrsnWKFsKqkQnwLlkhlfdaeeipseyfe 39 
                 YL   +++ ++W+F Kq Q+w ++h  + ++i ++ ++
  KKY18748.1 556 YLAAKSLKSQSWRFHKQYQTWFQRHE-EPKNITEDFEQ 592
                 8888889999**************97.66777776665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.3
     DUF2373  36 eyfellleYlkg 47 
                 ++f+ +++Yl++
  KKY18748.1 610 ADFKFVYKYLED 621
                 689999999986 PP

>> Cluap1  Clusterin-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  12.2   0.00019      0.69      80     217 ..      20     166 ..      11     184 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00019
      Cluap1  80 AvkELlkiaslLykalksaeeekeeeekstst........eldlssklsdlkaarqlase..itekgasLydlLekevelreartkalsrqleleeiek 168
                  ++E  +i + +y+++++a+++k e++ + ++        ++++ +  +++k    l ++   +ek+ s+   +eke++ +   ++ ls+++ l+  ek
  KKY18748.1  20 GIQEFDNIYEKIYSSSNAAQKDKLEDNLKREIkklqrfrdQIKTWAAGNEVKDKAPLLEQrkRIEKAWSISRSVEKEMKTKAYSKEGLSQSTKLDPKEK 118
                 68999999999999999995555555444444777888887777788888888877766522578999******************************* PP

      Cluap1 169 alkeaikkvkeelektkkalenlesdeanLeakiekkkqeleraqkrLq 217
                 + +e ++ ++e+++++ + le+l+++e++L+a ++k k+++ ++ +rL+
  KKY18748.1 119 EREEVCDFLSEQVDEIGRILESLDAEEDTLQAAVKKNKRDSAKS-DRLS 166
                 ***************************************99875.5665 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   8.8     0.037   1.3e+02      37      94 ..       4      63 ..       2     101 .. 0.84
   2 ?    6.8   0.6    0.0023       8.3       4      52 ..     116     164 ..     115     169 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.037
     DUF4200 37 ekkeqeleedllkfdkflkenda..kraralkkaeeerklkkekeaeikklkaeietlks 94
                +k++qe+ +++ k+ + ++e d+  ++++   +a+++ kl ++ ++eikkl+   +++k+
  KKY18748.1  4 RKTQQEIDKTFKKVAEGIQEFDNiyEKIYSSSNAAQKDKLEDNLKREIKKLQRFRDQIKT 63
                6899***************866544999***********************998888874 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0023
     DUF4200   4 kkremfevqealeakkeeiqrleealkqreeelekkeqeleedllkfdk 52 
                 k++e +ev   l+++ +ei r+ e+l+ +e+ l+++ ++ ++d +k d+
  KKY18748.1 116 KEKEREEVCDFLSEQVDEIGRILESLDAEEDTLQAAVKKNKRDSAKSDR 164
                 7899999************************************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1602  (0.0893524); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.34s 00:00:01.11 Elapsed: 00:00:00.53
# Mc/sec: 3563.63
//
Query:       KKY18749.1  [L=315]
Description: putative esterase lipase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-37  129.2   0.0    2.6e-37  128.8   0.0    1.1  1  Abhydrolase_3  alpha/beta hydrolase fold
     0.0004   19.4   0.0    0.00096   18.1   0.0    1.5  1  COesterase     Carboxylesterase family
     0.0015   19.2   0.0      0.002   18.7   0.0    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
     0.0043   17.0   0.0     0.0077   16.2   0.0    1.4  1  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal
     0.0065   16.0   0.0        2.7    7.4   0.0    2.2  2  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
       0.03   13.9   0.0      0.044   13.3   0.0    1.2  1  DUF2974        Protein of unknown function (DUF2974)


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.8   0.0   8.5e-41   2.6e-37       1     196 [.      67     261 ..      67     282 .. 0.85

  Alignments for each domain:
  == domain 1  score: 128.8 bits;  conditional E-value: 8.5e-41
                    EEEE--STTTS--TTTTHHHHHHHHHHHT.SEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHT CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelg.avvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrarde 95 
                    l+ fHG Gfv+    ++d++cre++++++ ++v+ v+Yrl+Pehp+Paa++da +al +++++     + p++i+l G SaG+nla+a++   ++ 
     KKY18749.1  67 LLNFHGSGFVIPLHGSDDRFCREVVSQTNsYTVLDVQYRLSPEHPYPAALHDAEDALTYVVAHP--DLYSPTQICLSGFSAGANLALALSSNPKNP 160
                    689************************98468999****************************5..6689*************************9 PP

                    T---EEEEEEESE-SSTSSTTSHHHHHCHHT.TTSSSSCHHHHHHHHHHHSSGGGGGSTTTSGGGCS-SST---.EEEEEETT-TTHHHHHHHHHH CS
  Abhydrolase_3  96 gepkvagqvliyPvtdlertesesikkaeel.adgplltraaldlfwrlylpeadrddplaspllaedlsglpp.tlvvvaefDplrdegeayaer 189
                    + +++a+++ +yP t+l + + ++ ++ e l  +   +++   + f + y+ +++ ++pl+spl+ +d +  p+ +lv++a++D+l +ege++aer
     KKY18749.1 161 NISSIAAVLAFYPPTNL-SIQPDQKQSPEPLiGK-NPIPTFVARVFNKSYIRDSTPTNPLISPLFFPDATIWPKnVLVITAGQDTLCKEGEELAER 254
                    9999*********8877.3322333333444344.45578899999********************9877777549******************** PP

                    HHHTT-- CS
  Abhydrolase_3 190 lraagve 196
                    l+ +g++
     KKY18749.1 255 LQREGKK 261
                    **98876 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.2e-07   0.00096      88     207 ..      49     158 ..      22     170 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3.2e-07
                 -EEEEEEESSSSSTTSSEEEEEEE--STTT...S-BGCGS-THHHHHHHTSEEEEE----HHHHH-B-SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEE CS
  COesterase  88 LyLnvytPkekkeakkklPVlVwihGggfq...tgsaseydgsaLaaegnvivVtinYRlGvlGFlstgdeeapGNvGllDqvlALrWVkenIasFGGd 183
                   + vy+P+  +  +  lPVl  +hG gf+    gs  ++  ++  ++++  v  ++YRl           e p  ++l D   AL++V  +   +   
  KKY18749.1  49 IKVHVYQPS--TPPSGPLPVLLNFHGSGFViplHGSDDRFCREVVSQTNSYTVLDVQYRLS---------PEHPYPAALHDAEDALTYVVAHPDLY--S 134
                 56889***7..4578888***********9555688888********************96.........47888999999999999999999999..5 PP

                 EEEEEEEEETHHHHHHHHHHHSGG CS
  COesterase 184 pervtlfGesAGaasvsllllspl 207
                 p ++ l G sAGa ++ +l+  p 
  KKY18749.1 135 PTQICLSGFSAGANLALALSSNPK 158
                 999999999999999998888776 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.8e-07     0.002      41     208 ..     106     280 ..      48     286 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 6.8e-07
                    GGCS--HHH.CHHHHHHHCCTT.......TTSEEEEEETCHHHHHHHHHHCC.....EE..EEES-..----TTTS----TTHHHHHHTT-C...C CS
  Abhydrolase_6  41 dpppldled.ladlaalldelaa.....gggpvvlvGHSlGGalalaaapla...lvvg..vlldppptalpagllaaalelllallallrl...l 122
                     +p + +++ l+d +++l+ ++a     ++ +++l G S G+ lala+ + +     ++   ++ +   ++p+++l+  + + + + +l  +   +
     KKY18749.1 106 LSPEHPYPAaLHDAEDALTYVVAhpdlySPTQICLSGFSAGANLALALSSNPknpN-ISsiAAVLA---FYPPTNLSIQPDQKQSPEPLIGKnpiP 197
                    33445555534666888888877888899******************555559953.444566666...888888888888877777777773334 PP

                    CCHCCHS-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGCEEECTT-C...HHHHCHHCCCHSTTEEET........CE...SSS CS
  Abhydrolase_6 123 awlsreplprlfladedadaawrarlarlaallaglgllpaaawadlpvpllvlggeDp...lvprllerllaqagarlp........vvlpgaGH 207
                    ++++      + ++      ++ +  ++  +l ++l++  a+ w+     + + +g+D       +l+erl + +g++l+        + + g GH
     KKY18749.1 198 TFVA------RVFN-----KSYIRDSTPTNPLISPLFFPDATIWPKNVLVI-T-AGQDTlckEGEELAERLQR-EGKKLGdmdrmvkwKRMTGVGH 279
                    5554......9999.....99999999999999988877777777777555.3.6777745422244555555.4444444445555777778888 PP

                    - CS
  Abhydrolase_6 208 l 208
                    +
     KKY18749.1 280 A 280
                    5 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.6e-06    0.0077       7      67 ..     120     186 ..     119     264 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.6e-06
                 HHHHHHHHCSTTB.--SSEEEEEETHHHHHHHHHHHHSS.....SEEEEEEES--SB--SSEEEETT CS
      BAAT_C   7 eeainyllrhpkv.kkdkigllGiSkGgelalllasflk.....kisavvlingsavvvegklvykd 67 
                 e+a++y+  hp + +  +i l G S G++lal+l+s  k     +i av +  +++  + +++ ++ 
  KKY18749.1 120 EDALTYVVAHPDLySPTQICLSGFSAGANLALALSSNPKnpnisSIAAVLAFYPPTNLSIQPDQKQS 186
                 899********9725679******************9885533345555555555555555554444 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00091       2.7      45      82 ..     116     154 ..     113     170 .. 0.89
   2 !    6.3   0.0    0.0019       5.8     133     187 ..     221     280 ..     201     305 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00091
                   HHHHHHHHHHHHHTT.S--GGGEEEEEETHHHHHHHHHH CS
  Peptidase_S9  45 fdDfiaaaealakeg.yvdserlaitGgSyGGyltgaal 82 
                   ++D  +a+ +++++  + +++++++ G S+G  l++a+ 
    KKY18749.1 116 LHDAEDALTYVVAHPdLYSPTQICLSGFSAGANLALALS 154
                   57888999************************9998865 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0019
                   HH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH.......--S-SEEEEEETTS-SS CS
  Peptidase_S9 133 pyspldnvkaypplLlihGlaDdrvppaealklvaaLq.......kkgknvlllifpdegHg 187
                   p+   d+  + +++L+i++ +D+ +  +e+++l+++Lq       + +  v+++ +++ gH 
    KKY18749.1 221 PLFFPDATIWPKNVLVITAGQDTLC--KEGEELAERLQregkklgDMDRMVKWKRMTGVGHA 280
                   5555555458999*********999..9**********444433222233556666666774 PP

>> DUF2974  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.5e-05     0.044      67     118 ..     118     170 ..     110     192 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.5e-05
     DUF2974  67 aqesAlkYlnkileesegk.iylgGhSkGGnlAvyaamnaeddlqeriskiys 118
                   e+Al Y+    + ++ + i+l+G+S G+nlA+  + n ++   + i++++ 
  KKY18749.1 118 DAEDALTYVVAHPDLYSPTqICLSGFSAGANLALALSSNPKNPNISSIAAVLA 170
                 56789999999999887755*************99998844444446666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2307.74
//
Query:       KKY18750.1  [L=1141]
Description: putative potentail helicase mov-10 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-28   97.1   0.0    2.2e-27   96.0   0.0    1.6  1  AAA_12         AAA domain
    5.5e-21   75.5   4.7    4.6e-12   46.3   0.0    2.8  3  AAA_11         AAA domain
    1.1e-06   29.0   0.0    3.8e-06   27.3   0.0    1.9  2  AAA_19         AAA domain
    2.3e-05   24.2   0.0    0.00013   21.7   0.0    2.2  1  AAA_30         AAA domain
     0.0003   20.8   0.0    0.00066   19.7   0.0    1.6  1  ResIII         Type III restriction enzyme, res subunit
    0.00091   18.8   0.0     0.0023   17.5   0.0    1.7  1  UvrD-helicase  UvrD/REP helicase N-terminal domain
     0.0064   16.3   0.0      0.014   15.2   0.0    1.5  1  DEAD           DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.069   13.0   0.0       0.32   10.8   0.0    2.1  1  Helicase_RecD  Helicase
      0.088   12.2   0.5       0.19   11.1   0.0    1.8  2  UvrD_C         UvrD-like helicase C-terminal domain
       0.09   13.1   0.0       0.24   11.7   0.0    1.7  1  AAA_16         AAA ATPase domain
       0.17   11.3   0.0       0.35   10.3   0.0    1.5  1  PhoH           PhoH-like protein
       0.18   12.1   0.0       0.66   10.2   0.0    2.0  1  AAA_22         AAA domain


Domain annotation for each model (and alignments):
>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0   1.5e-30   2.2e-27      15     198 ..     655     868 ..     637     869 .. 0.85

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 1.5e-30
      AAA_12  15 ekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkreleaqealeeplep.lvfidvekseeekekke.......ksyiNeeEaelvvklvekllkk 105
                  + + L  +YR+h++I+  ps lfY+++L ++++ ++  + +  +++ p++  ++f++  + +  ++  +       +s++N+ E e  +++ ++llk 
  KKY18750.1 655 PAFTNLIRNYRSHSAILATPSLLFYSDTLLSESTHRTPLVTEFPHWKPPYRWpIIFVQSTSPDAFEDMVTsaqgitgTSLVNSGETERALNVTKTLLKL 753
                 56678999*************************99999998778888777655999998444333333223456778*******************998 PP

      AAA_12 106 gsee............erkkigvitpYraqvellkkklkekeeeksekeievntvdgfQGrekdviilslVRsn....ekk...........eigflkd 177
                   +             e ++i+vi+p+raqv  l++ ++++   +    ++++  ++fQG e +vii+ + R++    + +           + g + +
  KKY18750.1 754 EDHVqggkytatkpvlEPNEIAVIAPFRAQVYRLRELFRKHGFGT----VNIGPLEAFQGLESRVIIFCTTRTRlagaN-EqarfikediawNRGVIGQ 847
                 87778999********99*********************988887....9***********************765541.14577888888899***** PP

      AAA_12 178 errlNValTRAkskliivGnk 198
                 ++++NVa+TRAk++l+++G++
  KKY18750.1 848 KQKFNVAMTRAKEALFVIGDE 868
                 *******************96 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   3.1e-15   4.6e-12       2      80 ..     388     465 ..     387     475 .. 0.84
   2 !   30.7   0.1   1.7e-10   2.5e-07     216     260 ..     535     612 ..     499     613 .. 0.73
   3 ?   -4.6   1.1       9.9   1.5e+04     130     149 ..    1082    1101 ..    1052    1131 .. 0.34

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 3.1e-15
      AAA_11   2 lndsqreaiksalsese...itliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglld 80 
                 ln +q++a+  +++++      li+GPPGtgKTkt+ve   qll +    + ++ +p++L+CapS+ A D +++rl++ l +
  KKY18750.1 388 LNYEQHKAVDAIVTNKYgevPYLISGPPGTGKTKTLVEAALQLLGN----APEDVTPHLLICAPSDPAADTITLRLSKYLSQ 465
                 8999999997777777667668*********************554....458999********************994443 PP

  == domain 2  score: 30.7 bits;  conditional E-value: 1.7e-10
      AAA_11 216 k..................kfdvviIDEAaqavEpstliPlrlga...............kkvvLvGDpkQLpatvis 260
                                       +++IDEAaqa+Ep tliPl+  +                +++++GD  QL +  ++
  KKY18750.1 535 LetvfvispstivdikpviHWTALLIDEAAQATEPDTLIPLLVVSpilppllsndhrrfaPQLIMAGDEHQLGPHLFN 612
                 055555555555555555566789*****************88888999*******999999**********997765 PP

  == domain 3  score: -4.6 bits;  conditional E-value: 9.9
      AAA_11  130 skeleklakelrafeeeeek 149 
                  ++++ +  +++++++++ e 
  KKY18750.1 1082 NATTTAAGDSISNDNNTTET 1101
                  22222222222222222111 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   2.5e-09   3.8e-06       6     118 ..     401     572 ..     392     610 .. 0.65
   2 ?   -3.2   0.0       6.3   9.4e+03     125     139 ..     855     869 ..     847     875 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 2.5e-09
      AAA_19   6 e.alkekvllvtaGpGtGKTrvlkhivallvelggvkp.eeillvaftgrAakelrerlaalgae.................................. 68 
                 + +  e + l+ ++pGtGKT++l+++   l+ +  +++  ++l++a+   Aa+ ++ rl++++ +                                  
  KKY18750.1 401 TnKYGEVPYLISGPPGTGKTKTLVEAALQLLGNAPEDVtPHLLICAPSDPAADTITLRLSKYLSQkelfrlnswtrpsaevpdsilgftftesdlfsfp 499
                 446667789*************99876666655555542678899**************9888887888888888888888888887777777777777 PP

      AAA_19  69 ...........atTiHrlal.....ldfddlltealelle........eaeeekklqeee.llivDEfqdvd..elq 118
                             tT+ +  +     l++ dl + al   e           + k++  ++ +l++DE+ + +  ++ 
  KKY18750.1 500 efetlmqykiiVTTCKAADMlvqarLTNRDLAKLAL---EtvfvispsTIVDIKPV-IHWtALLIDEAAQATepDTL 572
                 777777777755555554446666655555554444...14457888844455666.456699***98765533333 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6.3
      AAA_19 125 llgekkklllvGDpd 139
                 ++  k+ l+++GD+ 
  KKY18750.1 855 MTRAKEALFVIGDER 869
                 555567799***985 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   8.9e-08   0.00013       1      63 [.     387     456 ..     387     608 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 8.9e-08
      AAA_30   1 elnaeQaaavealltsg..drvavltGpAGtGKttalkal.reaweaag....grviglAptgkaAkvLa 63 
                 eln eQ++av+a++t++  +   ++ Gp+GtGKt +l ++  +++ +a      +++++Ap+  aA++++
  KKY18750.1 387 ELNYEQHKAVDAIVTNKygEVPYLISGPPGTGKTKTLVEAaLQLLGNAPedvtPHLLICAPSDPAADTIT 456
                 5899**********9972245679**********877655367777775567677889********9876 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   4.4e-07   0.00066       3      84 ..     387     469 ..     385     563 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 4.4e-07
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S........-EEEEESSHHHHHHHHHHGGGGTGG.... CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee...kflflvprkslleqtleefkkflseayke 84 
                 el++ Q +a+++++ +   +++  +li  + GtGKT ++++++ +ll +++e+   + l+ +p+    +    +++k+ls++  +
  KKY18750.1 387 ELNYEQHKAVDAIVTNK--YGEVPYLISGPPGTGKTKTLVEAALQLLGNAPEDvtpHLLICAPSDPAADTITLRLSKYLSQKELF 469
                 68999********9553..8999**************************999999999999999888777777777777777666 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.5e-06    0.0023      13      73 ..     406     467 ..     388     491 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.5e-06
                    SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGG.EEEEESSHHHHHHHHHHHHHHHHHCC CS
  UvrD-helicase  13 ggpilveAsAGsGKTfvlaerilrlikeeeiepdr.ilvvTFTnkAaeElkeRieealkkae 73 
                    + p l++  +G+GKT++l+e  l+l+ ++  +++  +l+      Aa+ +  R+ + l ++e
     KKY18750.1 406 EVPYLISGPPGTGKTKTLVEAALQLLGNAPEDVTPhLLICAPSDPAADTITLRLSKYLSQKE 467
                    45789************************8888756*******************9988776 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   9.2e-06     0.014       4      77 ..     392     470 ..     390     539 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 9.2e-06
                 HHHHHHHHH....TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST.SE CS
                 xxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
        DEAD   4 Qaeaiplil....gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid.lr 77 
                 Q +a+++i+    g+   l++++ G+GKT   + ++lq + +  ++ +p  li +P+   a  +  +l+k++++ +  r
  KKY18750.1 392 QHKAVDAIVtnkyGEVPYLISGPPGTGKTKTLVEAALQLLGNAPEDVTPHLLICAPSDPAADTITLRLSKYLSQKElFR 470
                 6666777774442334678*********************9999************************99999644333 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00021      0.32       2      57 ..     411     470 ..     410     570 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00021
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegk....snilvtapskenvktlfeflakglealglke 57 
                    +++ +G+GK+ +l  a+ +l+ ++      ++l++aps  +++t++ +l k l++ +l +
     KKY18750.1 411 ISGPPGTGKTKTLVEAALQLLGNAPedvtPHLLICAPSDPAADTITLRLSKYLSQKELFR 470
                    8899***********99999998877888899*****************99999877655 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       2.5   3.7e+03       3      15 ..     660     672 ..     659     682 .. 0.84
   2 ?   11.1   0.0   0.00013      0.19     328     345 ..     848     865 ..     813     869 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.5
                 xxxxxxxxxxxxx RF
      UvrD_C   3 LekNyRStksLlk 15 
                 L +NyRS + +l 
  KKY18750.1 660 LIRNYRSHSAILA 672
                 779******9986 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00013
                 xxxxxxxxxxxxxxxxxx RF
      UvrD_C 328 kRlfYVaiTRAkkrLfis 345
                 k++f Va+TRAk++Lf++
  KKY18750.1 848 KQKFNVAMTRAKEALFVI 865
                 789*************98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00016      0.24      25      88 ..     407     466 ..     391     534 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
      AAA_16  25 elvllsGesGvGKsslv.rellralekd...ggiflrgkcdqlesaipysalaqalareellrqllde 88 
                    l+sG++G+GK++ + +++l +l ++   +   ++ +   +   +p ++ a++++  +l + l ++
  KKY18750.1 407 VPYLISGPPGTGKTKTLvEAAL-QLLGNapeD---VTPHLLIC---APSDPAADTITL-RLSKYLSQK 466
                 5679**********88835555.555551221...22222222...444556666633.555555555 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00023      0.35       5      46 ..     388     433 ..     386     457 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00023
                 -SHHHHHHHHHHHH-S....EEEEE--TTSSTTHHHHHHHHHHHHT CS
        PhoH   5 ktkeQkeylealkknd....ivfaiGpaGtGKtylavalavealkk 46 
                  + eQ+++++a+ +n+       + Gp GtGKt   v +a+++l +
  KKY18750.1 388 LNYEQHKAVDAIVTNKygevPYLISGPPGTGKTKTLVEAALQLLGN 433
                 5789********9666555457889****************99865 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00044      0.66       8      38 ..     409     450 ..     404     472 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00044
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee............e 38 
                  ++ G++GtGKT +l + + ql   +++e+            +
  KKY18750.1 409 YLISGPPGTGKTKTLVEAALQLL-GNAPEDvtphllicapsdP 450
                 5899***********99999984.2222223344444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.48
# Mc/sec: 7179.97
//
Query:       KKY18751.1  [L=813]
Description: putative conserved serine proline-rich protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-13   51.2   0.1    2.1e-13   50.4   0.1    1.4  1  C2        C2 domain


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.1   1.2e-17   2.1e-13       1     102 [.      37     138 ..      37     139 .. 0.89

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 1.2e-17
                 TEEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSS.SSSEEEEEEEEEESC.HTTSEEEEEEEEECSSSTEEEEEEEEEEGHH..HHTTH CS
          C2   1 gklevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrvikns.lnPvWnekftfevae.leeakLeveVfdndrlskddfiGkveiplst..llsge 95 
                 g+l v v +AknLpn  kk + +py+ + l gk+ +kT++ ++    P+W+++++f v+e +   kL+v+Vf++d+  k ++i +  i+ls+  +  g 
  KKY18751.1  37 GTLVVVVDRAKNLPNI-KKVKQNPYCAMRL-GKEAKKTETDRRGgQTPRWDQELRFTVHEsPDYYKLKVSVFNDDK--KTELISEGWIDLSQviIPGGG 131
                 6899*********999.67799********.9999999987555256**************************999..999***********9888888 PP

                 HHHEEEE CS
          C2  96 eaegwyp 102
                 + ++w +
  KKY18751.1 132 QSDNWQE 138
                 8888866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.54
# Mc/sec: 4520.23
//
Query:       KKY18752.1  [L=539]
Description: putative small nucleolar ribonucleoprotein complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.2e-49  165.7   0.3    9.7e-49  164.8   0.3    1.5  1  UTP15_C      UTP15 C terminal
    7.1e-20   71.0   4.1    7.1e-05   23.5   0.0    5.9  6  WD40         WD domain, G-beta repeat
    1.6e-08   34.7   0.8        0.2   12.0   0.0    4.7  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0095   15.2   0.0        1.6    7.9   0.0    2.3  2  RAB3GAP2_N   Rab3 GTPase-activating protein regulatory subuni
  ------ inclusion threshold ------
      0.088   12.8   0.0         11    6.1   0.0    3.0  2  WD40_3       WD domain, G-beta repeat
       0.11   11.5   0.1       0.18   10.8   0.1    1.3  1  Vps16_C      Vps16, C-terminal region


Domain annotation for each model (and alignments):
>> UTP15_C  UTP15 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.8   0.3   3.2e-52   9.7e-49       1     147 []     382     529 ..     382     529 .. 0.96

  Alignments for each domain:
  == domain 1  score: 164.8 bits;  conditional E-value: 3.2e-52
     UTP15_C   1 dykgeeadivieek....kkkklkkydklLrkfryskALdavlekkvekspevvvtlleeLrhRgalraALagrdeeslepiLkfllkhitdpryvsll 95 
                 d+ ge++di++e++      kk kk+dklL++ +ys+ALd+vl++   ++   +++ll++LrhR+alr+AL++r+e++l+pi+k+++ hi +p +++++
  KKY18752.1 382 DFLGEGVDIIVEGNksssSTKKSKKWDKLLHQSQYSAALDSVLQT---QDTLLTFSLLTQLRHRSALRSALSNRNEVTLSPIMKWVSSHIVHPTFIPIC 477
                 5789*******966455679*************************...78************************************************* PP

     UTP15_C  96 vdvanvlldlyseklgqseeldelvkrLkrkvreevelakellelkGmlell 147
                 v++ ++++dlys +lgqseeld++v+rL+++vre+ve+a+e++ ++Gmlel+
  KKY18752.1 478 VEISMNIMDLYSGHLGQSEELDKQVERLRTRVREQVERAQEAVVTRGMLELI 529
                 **************************************************97 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.6   4.6e+03      20      36 ..     100     116 ..      80     118 .. 0.66
   2 !   21.0   0.2   1.5e-07   0.00045       4      38 .]     125     161 ..     122     161 .. 0.88
   3 !   19.1   0.0   5.8e-07    0.0017       4      38 .]     168     205 ..     165     205 .. 0.74
   4 ?    2.4   0.0      0.11   3.3e+02       5      34 ..     214     242 ..     210     245 .. 0.82
   5 !   23.5   0.0   2.4e-08   7.1e-05       1      37 [.     250     287 ..     250     288 .. 0.95
   6 ?   -0.5   0.0      0.92   2.7e+03      11      34 ..     302     321 ..     292     323 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.6
                 TTSSEEEEEETTSEEEE CS
        WD40  20 pdgawlasGsdDgtvri 36 
                  dg+ +++G+d g + +
  KKY18752.1 100 YDGRVVVAGDDTGAIQV 116
                 47788998886666655 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 1.5e-07
                 EEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                 l+t++ H ++v+  ++sp  +  l+s+sdD+tvr+Wd
  KKY18752.1 125 LKTWKEHkQPVWVTKWSPQETTsLMSCSDDNTVRLWD 161
                 789999*888888899999999888***********9 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 5.8e-07
                 EEEEESS.SSEEEEEEETTSSE..EEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgaw..lasGsdDgtvriWd 38 
                 ++++ GH + v+s +f p ++   l+sGs+D+tvr+Wd
  KKY18752.1 168 VTKFVGHqDYVRSGSFMPGQNSglLVSGSYDQTVRLWD 205
                 66788995559866655555555599***********9 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.11
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtv 34 
                  t++ H + v s+   p+g+ ++++  D+ +
  KKY18752.1 214 MTFK-HvGAVESVLPMPSGTTVLAAA-DNQI 242
                 5676.87789************9988.8876 PP

  == domain 5  score: 23.5 bits;  conditional E-value: 2.4e-08
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 g++l++++ H + vtsla  ++g+ l+sG+ Dg+++++
  KKY18752.1 250 GKPLHIIKNHqKTVTSLALASNGTRLVSGGLDGHLKVF 287
                 689*******999***********************97 PP

  == domain 6  score: -0.5 bits;  conditional E-value: 0.92
                 SSEEEEEEETTSSEEEEEE..TTSEE CS
        WD40  11 ssvtslafspdgawlasGs..dDgtv 34 
                 s++ sl      a ++sG   +D+++
  KKY18752.1 302 SPILSL------AIITSGAtrEDKHI 321
                 348888......88988854469988 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   7.2e-05      0.22      38      90 ..      90     141 ..      59     143 .. 0.76
   2 !    5.9   0.0    0.0051        15      37      81 ..     131     176 ..     129     184 .. 0.78
   3 !    7.2   0.0     0.002       6.1      19      81 ..     203     261 ..     187     264 .. 0.79
   4 !   12.0   0.0   6.6e-05       0.2      32      81 ..     256     303 ..     234     311 .. 0.76
   5 ?   -2.7   0.0       2.5   7.5e+03      50      67 ..     318     335 ..     315     352 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.2e-05
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  d + +s + + dg++ + + + g+++++d++s  ++++++ +++  v   +W+
   KKY18752.1  90 DDTAHSAEIRYDGRVVVAGDDTGAIQVFDINSRAILKTWKEHKQP-VWVTKWS 141
                  55566667789****************************999984.8888886 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0051
  ANAPC4_WD40  37 edsevrsLaWkpdgkl.Lavaysdgevrlldaesgkvvhslsvkse 81 
                  +++ v   +W+p+++  L+   +d++vrl d  s + v ++  +++
   KKY18752.1 131 HKQPVWVTKWSPQETTsLMSCSDDNTVRLWDLPSSESVTKFVGHQD 176
                  667778889***9987255555678**********99999866655 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.002
  ANAPC4_WD40  19 llvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  l+ +R + + v+t+   k+ + v+s+   p+g+    a +d+++ +ld+  gk +h ++ +++
   KKY18752.1 203 LWDSRASERAVMTF---KHVGAVESVLPMPSGTTV-LAAADNQIAVLDIIAGKPLHIIKNHQK 261
                  45577777888888...778888888888888764.5678*****************999987 PP

  == domain 4  score: 12.0 bits;  conditional E-value: 6.6e-05
  ANAPC4_WD40  32 leedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +  ++++++v+sLa   +g+ L+ +  dg++++++    +vv+ +++ks 
   KKY18752.1 256 I--KNHQKTVTSLALASNGTRLVSGGLDGHLKVFETDGWNVVSGSKYKSP 303
                  3..789999************************99999999998888876 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 2.5
  ANAPC4_WD40  50 gklLavaysdgevrllda 67 
                  +k +av++s g +++   
   KKY18752.1 318 DKHIAVGMSSGLLSIKTR 335
                  677888888887666544 PP

>> RAB3GAP2_N  Rab3 GTPase-activating protein regulatory subunit N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0038        11      71     346 ..      97     129 ..      81     158 .. 0.66
   2 !    7.9   0.0   0.00052       1.6      78     149 ..     274     344 ..     254     452 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0038
  RAB3GAP2_N  71 qgspdwtviavGlssGylrfytengelLlsqllheepvlkikcvssqekeeseelsilypkaivvidglsllsvLracrnqlaraaasgsdsvseseek 169
                 + ++d +v+++G ++G + +++ n   +l+                                                                     
  KKY18752.1  97 EIRYDGRVVVAGDDTGAIQVFDINSRAILKT-------------------------------------------------------------------- 127
                 4466666666666666666666666666655.................................................................... PP

  RAB3GAP2_N 170 leykkwklqsqdkinDaaivgllkpstfdqlvaasllggynakvrsseprmsrlvavGskpvisfyyasegssqpllsdvasavaskltsalfslaksw 268
                                                                                                                    
  KKY18752.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

  RAB3GAP2_N 269 lGgssksseeqqtkkeekkkpkvepaaplslrfgLkDskRegesivlsPsgrlaavtDsLgRVlLlDvqagvvvRlWK 346
                                                                                             WK
  KKY18752.1 128 ----------------------------------------------------------------------------WK 129
                 ............................................................................43 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00052
  RAB3GAP2_N  78 viavGlssGylrfytengelLlsqllheepvlkikcvssqekeeseelsilypkaivvidglsllsvLracr 149
                  ++ G  +G+l++++ +g  ++s   +++p+l++ +++s+ ++e++ +++ +++ +  i+   l+ + +++ 
  KKY18752.1 274 RLVSGGLDGHLKVFETDGWNVVSGSKYKSPILSLAIITSGATREDKHIAVGMSSGLLSIKT-RLSGTQKVKE 344
                 56678889***************************879999999******99999988874.3443333333 PP

>> WD40_3  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0037        11       1      23 [.     213     235 ..     213     245 .. 0.87
   2 ?    3.2   0.0     0.031        92       6      31 ..     259     284 ..     258     289 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0037
      WD40_3   1 VneYrHsvgIkklfpnpsGtrlv 23 
                 V++++H   + ++ p psGt + 
  KKY18752.1 213 VMTFKHVGAVESVLPMPSGTTVL 235
                 899****************9875 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.031
      WD40_3   6 HsvgIkklfpnpsGtrlvfiDekgdg 31 
                 H+  +++l    +Gtrlv    +g++
  KKY18752.1 259 HQKTVTSLALASNGTRLVSGGLDGHL 284
                 8999*************976555555 PP

>> Vps16_C  Vps16, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1     6e-05      0.18      29      68 ..     403     442 ..     398     455 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6e-05
     Vps16_C  29 aeeqvelLlklekselAlkkaiesgdteLiisvllelkkk 68 
                 ++++   Ll+  +++ Al ++++++dt L++s+l +l+++
  KKY18752.1 403 KSKKWDKLLHQSQYSAALDSVLQTQDTLLTFSLLTQLRHR 442
                 56677889999*************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       959  (0.0534888); expected 358.6 (0.02)
Passed bias filter:                      702  (0.0391544); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.50
# Mc/sec: 3255.14
//
Query:       KKY18753.1  [L=890]
Description: putative chitin synthase 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-74  248.1   0.0    5.7e-74  247.5   0.0    1.3  1  Chitin_synth_1   Chitin synthase
    4.9e-30  103.3   0.0      9e-30  102.5   0.0    1.5  1  Chitin_synth_1N  Chitin synthase N-terminal
    2.1e-22   79.5   3.8      1e-18   67.3   0.0    2.2  2  Chitin_synth_2   Chitin synthase


Domain annotation for each model (and alignments):
>> Chitin_synth_1  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.5   0.0   9.6e-78   5.7e-74       1     163 []     230     393 ..     230     393 .. 0.95

  Alignments for each domain:
  == domain 1  score: 247.5 bits;  conditional E-value: 9.6e-78
  Chitin_synth_1   1 mynEdkellarTLkgvmkNieelkkrkkskvwgkdsWkkivVcivsDGrekideetldvlaalgvyqegvakkkvngkevkahlfeyttqlsvde 95 
                     mynEd+ l+arT+ gv+kNie++++r++sk+wgk++WkkivVc+vsDGr ki+++t +vla lgvyq+g+ak++vngk+v+ah++eyttq+ +d 
      KKY18753.1 230 MYNEDDFLFARTMVGVFKNIEYMCSRTNSKTWGKEAWKKIVVCVVSDGRAKINPRTRAVLAGLGVYQDGIAKQQVNGKDVTAHIYEYTTQIGLDL 324
                     9********************************************************************************************65 PP

  Chitin_synth_1  96 .elklkenekslvpvqllfclkeknakkinShrWlfnafarllqPevcvlldvGtkpgkkslyklwkaf 163
                        ++  + ++  pvq+lfclkekn+kkinShrW+f+af+r+l+P++cvl+d+Gtkpgk+s+y+lwkaf
      KKY18753.1 325 kGSNVIFKPRQGPPVQMLFCLKEKNQKKINSHRWFFQAFGRILDPNICVLIDAGTKPGKDSVYHLWKAF 393
                     333344444579*******************************************************98 PP

>> Chitin_synth_1N  Chitin synthase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   1.5e-33     9e-30       2      73 .]     155     229 ..     154     229 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 1.5e-33
  Chitin_synth_1N   2 kkvkLlngnlvldlpvpkkllkalpeee.keseEfthmRYtAvTcdPddftkegytLRqalyg..ReteLlIviT 73 
                      k+v+L+ngnlvld+pvp+kll+++p++e  e++EfthmRY+A+TcdP++f +e++tLRq+l+   R+teL+Iv+T
       KKY18753.1 155 KEVQLFNGNLVLDCPVPPKLLAQVPHAEpPERDEFTHMRYSAATCDPSEFYNERFTLRQRLFAkpRHTELFIVVT 229
                      89***********************999899******************************999**********9 PP

>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0   1.7e-22     1e-18     204     375 ..     371     544 ..     366     588 .. 0.86
   2 !   10.6   3.0   2.6e-05      0.15     434     498 ..     695     759 ..     634     776 .. 0.72

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 1.7e-22
  Chitin_synth_2 204 ivlmvdadtkvapdsltrlvaalvkdpeilglcGetkiankke....swvtaiqvfeyyishhlskafesvfGsvtclPGcfslyrikaakgadg 294
                     i++++da tk   ds+ +l  a+  +p+  g cGe k+   +       + a q fey +s  l k +es fG ++ lPG fs+yr  a ++ ++
      KKY18753.1 371 ICVLIDAGTKPGKDSVYHLWKAFDINPMCGGACGEIKVMLSHGkkllNPLVATQNFEYKMSNILDKPLESSFGFISVLPGAFSAYRYVALQNDKN 465
                     7899*********************************9754431111446799***********************************9999888 PP

  Chitin_synth_2 295 kwvPilvspeiveeysenvvdtlhkknllllGedrylt.tlllktfpkrktvfvpqakcktvaPdtfkvllsqrrrwinstv 375
                        P+  ++    e  +     +   n+ +l edr l   l+ k   +    +v++a+ +t +Pd++  ++ qrrrw+n + 
      KKY18753.1 466 GQGPL--EKYFAGEKMHGANAGIFTANM-YLAEDRILCfELVSKRNCRWLLQYVKSATGETDVPDRMAEFILQRRRWLNGSF 544
                     78886..444455555555566777775.799****98458889999999*****************************765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 2.6e-05
  Chitin_synth_2 434 plvllaivlGlpailivltarkleyvawllvyllalPifnfvlPlyafwhlddfswGetrvveGe 498
                      +v la  + l  +   l    +++ + ++ y+l  P +  vl +yaf +  d +wG     + e
      KKY18753.1 695 MIVSLASTYVLWFVCSFLFFDPWHMFTCFVQYILLTPTYINVLNIYAFCNTHDITWGTKGDDKAE 759
                     4566788888888888888899***********************************86555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (890 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.53
# Mc/sec: 5049.74
//
Query:       KKY18754.1  [L=716]
Description: putative galactose oxidase kelch beta-propeller [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-10   39.6   0.4    3.6e-10   39.6   0.4    4.1  4  Kelch_5   Kelch motif
    0.00012   22.1  12.3       0.18   11.8   0.7    5.1  5  Kelch_4   Galactose oxidase, central domain
  ------ inclusion threshold ------
      0.015   15.2   0.0      0.028   14.2   0.0    1.3  1  PulG      Type II secretory pathway pseudopilin
       0.16   12.2   0.2       0.42   10.8   0.0    1.7  2  Shisa     Wnt and FGF inhibitory regulator
        0.8    9.8   3.2        7.3    6.7   0.0    3.7  4  Kelch_2   Kelch motif


Domain annotation for each model (and alignments):
>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.094   3.4e+02      14      24 ..      44      54 ..      33      68 .. 0.74
   2 ?   -2.2   0.6       1.2   4.4e+03      20      29 ..     104     111 ..      89     116 .. 0.80
   3 ?   -0.0   0.1      0.26   9.3e+02       5      24 ..     147     170 ..     145     192 .. 0.72
   4 !   39.6   0.4     1e-13   3.6e-10       1      42 []     205     253 ..     205     253 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.094
     Kelch_5 14 sekiYvyGGkv 24
                +  +Y+yGG  
  KKY18754.1 44 NKALYLYGGEF 54
                4569*****65 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.2
     Kelch_5  20 yGGkvgrdgs 29 
                 yGG++  +++
  KKY18754.1 104 YGGYI--NNK 111
                 9***9..555 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.26
     Kelch_5   5 Raghcavtvs....ekiYvyGGkv 24 
                 Ra +++v+v+    + + ++GG+ 
  KKY18754.1 147 RAEGAMVFVPisrqGALVYFGGVE 170
                 788899999555667789999987 PP

  == domain 4  score: 39.6 bits;  conditional E-value: 1e-13
     Kelch_5   1 iPppRaghca.vtv.....sekiYvyGGkvg.rdgsvsddvyvLdlpsf 42 
                 +P +R+++ca +t+     s++iY+yGG +   +  ++ddvy+L++p+f
  KKY18754.1 205 VPDSRRRFCAgATWaqdhsSYNIYLYGGAGFgANTTGFDDVYILTMPGF 253
                 69********6666777767**********99***************99 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0014         5      15      45 ..      47      79 ..      39      83 .. 0.85
   2 !    4.8   0.4    0.0077        28       3      41 ..      88     136 ..      88     139 .. 0.90
   3 ?    2.2   0.0     0.052   1.9e+02      13      42 ..     162     199 ..     146     207 .. 0.70
   4 !   11.8   0.7   5.1e-05      0.18       2      34 ..     211     248 ..     210     268 .. 0.82
   5 ?   -2.7   0.0       1.7   6.1e+03       6      23 ..     273     290 ..     272     296 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0014
     Kelch_4 15 iylfGGrgedgtllndlyl...ldlstntWrrlg 45
                +yl+GG+ +d  +++  ++   +d+  n+W +++
  KKY18754.1 47 LYLYGGEFTD-VAVAQPFAlwtYDTVLNQWNKSA 79
                8********9.999999996557*******9874 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0077
     Kelch_4   3 aghsatsipd.gtiylfGGrgedg.........tllndlylldlstntW 41 
                 a+ s ++++d g  y +GG+ ++          t+ + l ++d + n++
  KKY18754.1  88 AYGSGVAVNDlGLGYHYGGYINNKtspnyagpsTATSSLVIYDMTANSF 136
                 588999**9999***********99999999999999999999999987 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.052
     Kelch_4  13 gtiylfGGrgedg.......tllndlylldlstntW..r 42 
                   +y fGG   +        ++++ ++++ ++ ++W  +
  KKY18754.1 162 ALVY-FGGVEFPYgvgtevaASMSTIFIYEIAEGKWytQ 199
                 3444.888888866888888999*************643 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 5.1e-05
     Kelch_4   2 Raghsatsipdg...tiylfGGrgedg..tllndlyll 34 
                 R++++at+ +d    +iyl+GG+g  +  t ++d+y+l
  KKY18754.1 211 RFCAGATWAQDHssyNIYLYGGAGFGAntTGFDDVYIL 248
                 999******997788******99996588999999987 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 1.7
     Kelch_4   6 satsipdgtiylfGGrge 23 
                 ++ +i++    ++GG  +
  KKY18754.1 273 TCNVINSAQMLIIGGTFP 290
                 677788888899***876 PP

>> PulG  Type II secretory pathway pseudopilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   7.9e-06     0.028       9      62 ..     406     459 ..     405     463 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.9e-06
        PulG   9 lallvtivslilsqlkqsrkktaeelkkqEvlnvalmAvqtkqdeLslNGvevt 62 
                 +++l++iv l+l  +++ ++++a ++++qEv  +     +  ++  + NG++++
  KKY18754.1 406 IGILLVIVGLVLFCISHRQRRIAPTNQQQEVQQMPSAIAELPERASTYNGSDMR 459
                 79****************************987766655666666666666665 PP

>> Shisa  Wnt and FGF inhibitory regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00012      0.42      77     180 ..     391     492 ..     364     509 .. 0.59
   2 ?   -2.8   0.1       1.8   6.4e+03     161     172 ..     535     547 ..     505     567 .. 0.45

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
       Shisa  77 evpkdiyvpvlivktifivfvivgvvvivcccgclkkkqrekrpgrenlssalaev.gpivtettsattv..vhsrysepqqssssssypgat.nqgyq 171
                 +vp ++++  ++++ i i++vivg v ++++ +  +   ++++ + +++ sa ae  +   t + s+ +v  +++++++  + ss+  ++g++      
  KKY18754.1 391 SVPIGTIIGAAVGGGIGILLVIVGLVLFCISHRQRRIAPTNQQQEVQQMPSAIAELpERASTYNGSDMRVaySPVPQKSGVELSSTMGSTGPSsPPS-- 487
                 23333778889*****************999777555555666667788888888863333324444444004444544444454444444443222.. PP

       Shisa 172 pvpvqpgmp 180
                      +g+p
  KKY18754.1 488 ----LHGSP 492
                 ....33332 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.8
       Shisa 161 sypgat.nqgyqp 172
                 syp+ + + +y  
  KKY18754.1 535 SYPHQShHSHYAL 547
                 1222111222222 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.002       7.3      10      44 ..      43      77 ..      39      82 .. 0.89
   2 ?   -0.4   0.0      0.36   1.3e+03      17      44 ..     104     138 ..     102     143 .. 0.74
   3 ?   -2.4   0.0       1.6   5.8e+03      11      20 ..     160     169 ..     147     189 .. 0.79
   4 ?    0.2   0.1      0.23   8.4e+02      14      24 ..     227     234 ..     226     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.002
     Kelch_2 10 pggkiyvvGGahtdnpnlsssdvhvldlekhvWee 44
                ++  +y++GG +td  +  ++ ++++d+  ++W +
  KKY18754.1 43 VNKALYLYGGEFTDVAVAQPFALWTYDTVLNQWNK 77
                56679****************************87 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.36
     Kelch_2  17 vGGa.......htdnpnlsssdvhvldlekhvWee 44 
                 +GG+        + +p+ ++s++ ++d   +++++
  KKY18754.1 104 YGGYinnktspNYAGPSTATSSLVIYDMTANSFTN 138
                 78887777777677788888888888888777776 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.6
     Kelch_2  11 ggkiyvvGGa 20 
                 +g ++ +GG+
  KKY18754.1 160 QGALVYFGGV 169
                 7889999999 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.23
     Kelch_2  14 iyvvGGahtdn 24 
                 iy++GGa   +
  KKY18754.1 227 IYLYGGA---G 234
                 9******...3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.54
# Mc/sec: 4014.53
//
Query:       KKY18755.1  [L=248]
Description: putative ubiquinone biosynthesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-71  237.4   1.0      1e-70  237.0   1.0    1.2  1  COQ7          Ubiquinone biosynthesis protein COQ7
    7.9e-05   23.1   0.1    0.00027   21.3   0.0    1.9  1  Rubrerythrin  Rubrerythrin
     0.0012   18.2   0.0     0.0017   17.6   0.0    1.2  1  KAP_NTPase    KAP family P-loop domain
     0.0071   16.4   0.0      0.012   15.7   0.0    1.4  1  DnaB          DnaB-like helicase N terminal domain
  ------ inclusion threshold ------
      0.017   15.5   0.1      0.061   13.8   0.1    1.9  1  GlutR_dimer   Glutamyl-tRNAGlu reductase, dimerisation domain


Domain annotation for each model (and alignments):
>> COQ7  Ubiquinone biosynthesis protein COQ7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.0   1.0   2.8e-74     1e-70       2     172 .]      68     248 .]      67     248 .] 0.99

  Alignments for each domain:
  == domain 1  score: 237.0 bits;  conditional E-value: 2.8e-74
        COQ7   2 ldrllRvdhaGElgAvaiYkgqlavlakkdpelkpllkemleqEkeHlatfeellkerrvrpslllplwkvagfalGaltallGkeaamacteavEtvi 100
                 ldr+lRv+haGEl+Av+iY++q+ ++ k++p+l+pl+k+m++qE +H++tf ++l+++r+rp++++p+w++a+ +lG+ ta++G+eaamacteavEt+i
  KKY18755.1  68 LDRALRVNHAGELAAVRIYTAQTPTIVKSHPHLRPLMKHMYDQEVDHFDTFTKMLARHRIRPTAMYPVWQAAASLLGWSTAMMGQEAAMACTEAVETAI 166
                 89************************************************************************************************* PP

        COQ7 101 geHYneqlreleelee..........eedkelleiikqfrddEleHldtAvendaekapaykllsaviklgcrvaiavaeri 172
                 g+HYneq+rel ++ +          +e   l++i+k++rd+EleHld+Ave+da+ka +y+ +++vi++gc++ai+++eri
  KKY18755.1 167 GDHYNEQVRELFKWMQdmrargedidPEIVTLIDILKRIRDEELEHLDHAVEHDAHKARPYEPITKVIEYGCKGAIWITERI 248
                 *************9999********99*****************************************************98 PP

>> Rubrerythrin  Rubrerythrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   7.6e-08   0.00027       3     109 ..      72     176 ..      70     187 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 7.6e-08
                   HHHHHHHHHHHHHHHHHHHHCHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHH.B.SSBBS-------TTGGHHHHHHHHHHHHHHHHHCH CS
  Rubrerythrin   3 LekAiagEssarrlYkelaekakegypqiaelFeelAeeEreHakilnklleklepelelevkekvreyaeakpkflttaknLeeaiegayaeeeem 99 
                   L  + agE  a r+Y++ +  + ++ p+++ l++ + ++E +H + + k+l   +          v+++a     ++t     e+a++  +a+e+ +
    KKY18755.1  72 LRVNHAGELAAVRIYTAQTPTIVKSHPHLRPLMKHMYDQEVDHFDTFTKMLARHRIRPT--AMYPVWQAAASLLGWSTAMMGQEAAMACTEAVETAI 166
                   777889**********************************************9888877..778899999999999999999999999999999999 PP

                   HHHHHHHHHH CS
  Rubrerythrin 100 yrfyeelaek 109
                     +y+e  ++
    KKY18755.1 167 GDHYNEQVRE 176
                   9999988775 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.8e-07    0.0017      96     199 ..     116     219 ..      99     234 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.8e-07
  KAP_NTPase  96 kklkalkikgkiklrkacaiplvlilevalflliegasllavlsraaklkeeaplkklqteveelladmektLdalqkrlVvviDdLDrceteevlqll 194
                  +++++ +  +i+ +++  ++ ++  ++   ++++g+++  + ++a++ +  ++  ++  e  + ++dm +  ++ + ++V +iD L r+++ee+  l 
  KKY18755.1 116 DTFTKMLARHRIRPTAMYPVWQAAASLLGWSTAMMGQEAAMACTEAVETAIGDHYNEQVRELFKWMQDMRARGEDIDPEIVTLIDILKRIRDEELEHLD 214
                 3477788888999999999999999**********************************************************************9999 PP

  KAP_NTPase 195 eavkl 199
                  av++
  KKY18755.1 215 HAVEH 219
                 88887 PP

>> DnaB  DnaB-like helicase N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.4e-06     0.012      33      63 ..     167     197 ..     138     227 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.4e-06
                 GGSSSHHHHHHHHHHHHHHHTTTS-SHHHHH CS
        DnaB  33 edFyepahrliFeailelyekgepiDlvtvk 63 
                  d y+++ r++F+ ++++  +ge iD+ +v+
  KKY18755.1 167 GDHYNEQVRELFKWMQDMRARGEDIDPEIVT 197
                 589***********************86653 PP

>> GlutR_dimer  Glutamyl-tRNAGlu reductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   1.7e-05     0.061       8      53 ..     172     221 ..     169     234 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.7e-05
                  HHHHHHHHHHHHH.....HHHHHHHHHHHHHHHHHHHHHHHHHS-S..--- CS
  GlutR_dimer   8 eeveefeawlksl.....evvptIkalrekaeeireeeleralkklaldge 53 
                  e+v+e+++w++ +     +++p I+ l + +++ir+eele + + ++  + 
   KKY18755.1 172 EQVRELFKWMQDMrargeDIDPEIVTLIDILKRIRDEELEHLDHAVE-HDA 221
                  899999****999899999**********************999988.333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 1628.53
//
Query:       KKY18756.1  [L=963]
Description: putative rna polymerase ii transcription elongation factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-29  101.4   0.0    1.2e-27   96.5   0.0    2.5  2  Plus-3    Plus-3 domain
  ------ inclusion threshold ------
      0.085   12.4   2.7      0.089   12.3   0.1    2.0  2  Ssu72     Ssu72-like protein


Domain annotation for each model (and alignments):
>> Plus-3  Plus-3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0   1.4e-31   1.2e-27       1     105 [.     603     706 ..     603     710 .. 0.92
   2 ?    2.2   0.0     0.028   2.5e+02      79     102 ..     720     743 ..     708     748 .. 0.75

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 1.4e-31
      Plus-3   1 dlnkirlsRskleklleepffedavkgcfvRvkigeeretgqpvyrlaqivgvkeeekgkpyklkk..g.kkttnkylklrhgkseksfrlekvSnspf 96 
                 d++++r++R+++++++++p fe+++++c+ R+ ig    +gq+ yrla+i g+ +  kg+py+l+   g  ++t+++++ +hgk+e+ +++ ++Snspf
  KKY18756.1 603 DIQRARIGRDNFAQVCFYPGFEKTITNCYTRICIGPG-PNGQNAYRLAKILGL-S--KGRPYALQGpnGrMFVTDQWVTAAHGKAERVWPFLECSNSPF 697
                 799********************************75.479************.4..89*****444544899************************** PP

      Plus-3  97 teeEferwk 105
                 teeE++r++
  KKY18756.1 698 TEEEWRRYR 706
                 ********8 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.028
      Plus-3  79 hgkseksfrlekvSnspfteeEfe 102
                  + ++k   ++k+ n++fte+E+ 
  KKY18756.1 720 TAVNKKLADINKLINHHFTEAEIT 743
                 444456699*************86 PP

>> Ssu72  Ssu72-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.4     0.096   8.6e+02      44      66 ..      85     107 ..      82     119 .. 0.78
   2 ?   12.3   0.1   9.9e-06     0.089      68     115 ..     744     792 ..     710     806 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.096
                 TTSEEEE-TTS-HHHHHHHHHHH CS
       Ssu72  44 idkpnvyeFgtsyeeiyedLksk 66 
                 + k n y+F+ +y+++ + L   
  KKY18756.1  85 AAKNNKYTFTGTYNTMDTALYLI 107
                 56889***********9988755 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 9.9e-06
                 HHHHHHTSHHHHHHHHHHH-SS--BGGG---..--SEEEESSHHHHHHH CS
       Ssu72  68 kelyeanGllkmldrnrkiKkaPerwqeaee.kkfdvvitceervfdav 115
                 +++ ++nGll+m++r ++ K+  er ++a++ ++f+ v +ce+ +   v
  KKY18756.1 744 EKMRRQNGLLDMVNRTAERKEIEERRRQARAqGDFEAVQACEDELKALV 792
                 67889*****************99987765438*********9865555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (963 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1344  (0.0749624); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.46
# Mc/sec: 6276.32
//
Query:       KKY18757.1  [L=380]
Description: putative mitochondrial large ribosomal subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-22   78.5   0.0    2.3e-21   76.0   0.0    2.2  1  Ribosomal_L22  Ribosomal protein L22p/L17e
  ------ inclusion threshold ------
      0.026   15.3   0.1      0.058   14.2   0.1    1.5  1  Tau95          RNA polymerase III transcription factor (TF)II


Domain annotation for each model (and alignments):
>> Ribosomal_L22  Ribosomal protein L22p/L17e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0   2.6e-25   2.3e-21       2     103 .]     183     334 ..     182     334 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 2.6e-25
                    EEEEESS-HHHHHHHHHHHTTSBHHHHHHHHHT-SSTTHHHHHHHHHHHHHHHH..HT...................................... CS
  Ribosomal_L22   2 kgsnlrvsfkklrevarlIrgmkveeAlkyLkfskkkaakfvlklLknaeanaelkgl...................................... 59 
                    k+  +++s+kkl ++ar+I+g++++eA+ +++fs kkaa++v ++L  a+++a+  ++                                      
     KKY18757.1 183 KSPFFKTSIKKLAPLARQIAGKTIDEAILQMRFSVKKAAQDVRDHLIRARNEAIITKGmglnslppslplpfsksttavdvittdtsvlpvsqtth 278
                    67789************************************************876667************************************* PP

                    ............-GGGEEEEEEEEEEEEEEEEEEEESTTEEEEEEEEEEEEEEEEE CS
  Ribosomal_L22  60 ............dvdslvIeeiqvnkgpklkrrtyrArGrinpirkspchievvlk 103
                                 +++++I++++vn+gp+ ++++ rArG++n++r +++ i+v+lk
     KKY18757.1 279 nptlslkrsqttPETQIYIAQAWVNRGPYDQELECRARGQANMLRPPHTGISVLLK 334
                    ***********9999**************************************996 PP

>> Tau95  RNA polymerase III transcription factor (TF)IIIC subunit HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   6.5e-06     0.058      38     120 ..      89     192 ..      59     194 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.5e-06
                 X-----EE-................--S--TT-----...HHHHHHHHHHHHHH....HH-SEEEHHHHHTTS-GGGT.TTHHHHGGGTEEEE-SSTTT CS
       Tau95  38 rkkktivlk................Ptepeeelvkelkekkelqkaveelkklf....eerPiwtrraLknklekker.kklklalpyvaYyfksGPWr 115
                 +k  +  +k                P  p+++  k+++ ++e ++  e l +++    + r +w r+ L+  l+k++r  k  ++l++  ++ ++ P+ 
  KKY18757.1  89 EKAREELIKgglapnsifadeltapPPPPKASKGKQDEIEHEIPRNPESLAHVLnpkpRARAMWQRKMLVRSLQKRGRlTKSEKILQLERFHLSKSPFF 187
                 44444444455556666666777764444455555555557777777777777744447788************999999999***************9 PP

                 TEEEE CS
       Tau95 116 dlwvr 120
                 ++ ++
  KKY18757.1 188 KTSIK 192
                 99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2408.11
//
Query:       KKY18758.1  [L=1131]
Description: putative pre-mrna splicing factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-50  168.1   0.0    6.8e-17   61.1   0.0    4.9  5  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    6.5e-35  118.8   0.2    1.1e-29  102.1   0.0    3.8  4  RRM_occluded  Occluded RNA-recognition motif
    7.7e-06   25.9   0.1       0.03   14.4   0.0    3.8  4  RRM_7         RNA recognition motif
    1.9e-05   24.6   0.1       0.04   13.9   0.0    3.6  4  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif
    0.00077   19.5   0.9         10    6.3   0.0    4.2  4  RRM_3         RNA binding motif
     0.0049   16.8   0.0       0.32   11.0   0.0    2.5  2  Nup35_RRM     Nup53/35/40-type RNA recognition motif
     0.0067   17.2   0.2          1   10.4   0.0    3.8  3  TPR_14        Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.3   8.6e+03       1      20 [.     464     483 ..     464     484 .. 0.88
   2 !   33.1   0.1   1.4e-11   3.6e-08       1      69 [.     666     731 ..     666     732 .. 0.93
   3 !   48.7   0.0   1.9e-16   4.9e-13       1      66 [.     741     805 ..     741     807 .. 0.96
   4 !   61.1   0.0   2.7e-20   6.8e-17       1      70 []     832     900 ..     832     900 .. 0.98
   5 !   19.0   0.0   3.5e-07   0.00089       5      70 .]     964    1025 ..     960    1025 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.3
                 EEEESETTTSSHHHHHHHHH CS
       RRM_1   1 lfVgnLppdvteeeLkelFs 20 
                 ++V+ L+++ +++  +e F+
  KKY18758.1 464 VYVRFLSESGSWDSARETFR 483
                 799*****999999998886 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 1.4e-11
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 + V+nLp +v+e +++++F+++G i+++k+++  ++ +  +a++eF+ +e+A +A    n + ++ +++
  KKY18758.1 666 ILVENLPANVSEIKVRQFFRDCGVINTLKIIS--RNANEATAIIEFDEHEAALAAQT-KNLRDFEEHTI 731
                 68******************************..6******************9998.88888888776 PP

  == domain 3  score: 48.7 bits;  conditional E-value: 1.9e-16
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETT CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklgg 66 
                 +fV+n+pp+++e+ +++lFsk+G i++i+ ++ + +++++f++V+F   ++A++A e l+g+  g+
  KKY18758.1 741 VFVTNFPPEADENYIRDLFSKYGNIVDIRFPSLKYNTHRRFCYVQFRLNSEAQAATE-LDGYLTGD 805
                 8********************************************************.**987665 PP

  == domain 4  score: 61.1 bits;  conditional E-value: 2.7e-20
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 ++V+n+ + ++e++L  +F+k+G ++s++++r   +kskgf++  F ske+A++Ale +n+++++ r+++
  KKY18758.1 832 IYVRNIDWGLSESDLASIFQKYGTVESVRIPRGVGNKSKGFGYLVFSSKEEATAALE-MNEQTIKARQIH 900
                 8********************************************************.*******99986 PP

  == domain 5  score: 19.0 bits;  conditional E-value: 3.5e-07
                  SETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTT.EEETTEEEE CS
       RRM_1    5 nLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealng.kklggrelk 70  
                  n+p +v+++ ++++ +++G  ++i l +d     +  a+Ve+ + +dA kA   l g + ++gr+++
  KKY18758.1  964 NIPDTVNDSRIRAIAEPYGTLVKIVLRPD-----HQGAIVEYLDTSDAGKASLGLEGrEIVPGRKIH 1025
                  99**************************9.....999********************8888888885 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   0.00014      0.36       2      51 ..     664     715 ..     663     734 .. 0.77
   2 ?   -1.6   0.0      0.95   2.4e+03       6      33 ..     743     769 ..     739     802 .. 0.80
   3 ?    0.4   0.0      0.23   5.8e+02      48      70 ..     879     901 ..     874     904 .. 0.87
   4 !  102.1   0.0   4.3e-33   1.1e-29       1      79 []     957    1035 ..     957    1035 .. 0.97

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
  RRM_occluded   2 rtisllplsDtvnkariralveek..egeikkivLvpdheGAivefkdekia 51 
                   +ti + +l+ +v++ ++r+++ +    + +k i   ++   Ai+ef+++++a
    KKY18758.1 664 STILVENLPANVSEIKVRQFFRDCgvINTLKIISRNANEATAIIEFDEHEAA 715
                   689999******************54466666666778899*****877655 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.95
  RRM_occluded   6 llplsDtvnkariralveekegeikkiv 33 
                   + +++    ++ ir+l++++ g+i++i 
    KKY18758.1 743 VTNFPPEADENYIRDLFSKY-GNIVDIR 769
                   5666666677889*******.9999985 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.23
  RRM_occluded  48 ekiagkasLaLdgsefegkklrc 70 
                   +k  + a+L+++ ++++ +++++
    KKY18758.1 879 SKEEATAALEMNEQTIKARQIHV 901
                   5677899**************97 PP

  == domain 4  score: 102.1 bits;  conditional E-value: 4.3e-33
  RRM_occluded    1 ertisllplsDtvnkariralveekegeikkivLvpdheGAivefkdekiagkasLaLdgsef.egkklrcGtvkdLkks 79  
                    +rt++l++++Dtvn++rira+ e++ g ++kivL+pdh+GAive+ d+++agkasL L+g e+  g+k+++Gtv+++ k+
    KKY18758.1  957 ARTLGLMNIPDTVNDSRIRAIAEPY-GTLVKIVLRPDHQGAIVEYLDTSDAGKASLGLEGREIvPGRKIHIGTVSEMLKQ 1035
                    59***********************.*************************************55************885 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0         1   2.6e+03      28      40 ..     541     553 ..     534     591 .. 0.65
   2 ?   -2.3   0.0         2   5.2e+03       4      27 ..     666     689 ..     664     692 .. 0.84
   3 !    6.5   0.0    0.0036       9.3       3      35 ..     740     773 ..     738     801 .. 0.82
   4 !   14.4   0.0   1.2e-05      0.03       2      91 ..     830     913 ..     829     917 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1
       RRM_7  28 vlvdwPkkaeskk 40 
                   vdwP++  ++ 
  KKY18758.1 541 YNVDWPERLMQNY 553
                 5799**9943332 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2
       RRM_7   4 vFvGGlPiDiteeelkatfkefgk 27 
                 + v  lP++++e ++ + f+  g 
  KKY18758.1 666 ILVENLPANVSEIKVRQFFRDCGV 689
                 667889***********9998775 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0036
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkvl.vdwPkk 35 
                  vFv   P++ +e+ + + f+++g+++ + +P  
  KKY18758.1 740 TVFVTNFPPEADENYIRDLFSKYGNIVdIRFPSL 773
                 59**********************9643888875 PP

  == domain 4  score: 14.4 bits;  conditional E-value: 1.2e-05
       RRM_7   2 rkvFvGGlPiDiteeelkatfkefgkvl.vdwPkkaeskkkaaenskaakgyvflvfedeksvkaLleacteee..eelylklssrrlkskev 91 
                 r ++v  + + ++e++l + f+++g+v  v  P+            +  kg+ +lvf++++  +a le  ++    +++++++ss++  ++++
  KKY18758.1 830 REIYVRNIDWGLSESDLASIFQKYGTVEsVRIPRGVG---------NKSKGFGYLVFSSKEEATAALEMNEQTIkaRQIHVEISSKTGAKRQA 913
                 6789999999***************874244444332.........2347*******987666665555444443499********9988875 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0056        14      16      46 ..     679     712 ..     674     718 .. 0.65
   2 !   13.9   0.0   1.5e-05      0.04       4      52 ..     741     795 ..     738     796 .. 0.84
   3 ?   -0.8   0.0      0.61   1.6e+03      21      53 .]     850     887 ..     844     887 .. 0.81
   4 ?   -2.0   0.0       1.5   3.9e+03      24      52 ..     981    1009 ..     978    1009 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0056
  Nup35_RRM_2  16 lVlehFasfGeIvk..hyvp..kevsvmyvkfese 46 
                  +V+++F+++G I+   + ++   +  +++++f   
   KKY18758.1 679 KVRQFFRDCGVINTlkI-ISrnANEATAIIEFDEH 712
                  79********9998532.22344455666666555 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.5e-05
  Nup35_RRM_2   4 vaVsGydteli.elVlehFasfGeIvkhyvp.....kevsvmyvkfesekdaekA 52 
                  v V+ +++e   +++++ F  +G+Iv++ +p       + + yv+f+   +a+ A
   KKY18758.1 741 VFVTNFPPEADeNYIRDLFSKYGNIVDIRFPslkynTHRRFCYVQFRLNSEAQAA 795
                  66666766644499*********************9889*******988888766 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.61
  Nup35_RRM_2  21 FasfGeIvkhyvp.....kevsvmyvkfesekdaekAL 53 
                  F+ +G +    +p     k++ + y+ f s+ +a  AL
   KKY18758.1 850 FQKYGTVESVRIPrgvgnKSKGFGYLVFSSKEEATAAL 887
                  56666666666778888888999********9999997 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 1.5
  Nup35_RRM_2   24 fGeIvkhyvpkevsvmyvkfesekdaekA 52  
                   +G  vk+  ++    ++v++ +  da kA
   KKY18758.1  981 YGTLVKIVLRPDHQGAIVEYLDTSDAGKA 1009
                   78999999999999999*****9999888 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.036        91      13      59 ..     675     724 ..     666     740 .. 0.77
   2 !    5.5   0.0    0.0068        17       6      55 ..     743     797 ..     738     808 .. 0.80
   3 !    6.3   0.0    0.0039        10      13      76 ..     841     906 ..     832     930 .. 0.74
   4 ?   -3.4   0.0         4     1e+04      71      91 ..    1030    1049 ..     970    1054 .. 0.58

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.036
                 --HHHHHHHCHCCS...-ECEEEE-TTSSEEEEEESSHHHHHHHHHHHHH CS
       RRM_3  13 lsredikellsklg...evayvdyekgdkegevrFkedeeakkalekate 59 
                 +s  +++++++  g   +++ +  + +++++ + F+e+e+a +a  k   
  KKY18758.1 675 VSEIKVRQFFRDCGvinTLKIISRNANEATAIIEFDEHEAALAAQTKNLR 724
                 566678999999997778899999**************999888766554 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0068
                 EEE-SSS--HHHHHHHCHCCS...-ECE..EEE-TTSSEEEEEESSHHHHHHHHH CS
       RRM_3   6 lsGlnkelsredikellsklg...evay..vdyekgdkegevrFkedeeakkale 55 
                 ++ +  e   + i++l+sk+g   ++++    y+     ++v+F  ++ea++a e
  KKY18758.1 743 VTNFPPEADENYIRDLFSKYGnivDIRFpsLKYNTHRRFCYVQFRLNSEAQAATE 797
                 555566777889*********777556644678889999************9986 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0039
                 --HHHHHHHCHCCS-ECEEEE-TT..SSE...EEEEESSHHHHHHHHHHHHHC-B-CCTSSEEEEE--H CS
       RRM_3  13 lsredikellsklgevayvdyekg..dke...gevrFkedeeakkalekateaklkikdaevtlelLeG 76 
                 ls +d+  +++k+g+v+ v   +g  +k+   g++ F ++eea +ale   ++   ik  ++++e+ + 
  KKY18758.1 841 LSESDLASIFQKYGTVESVRIPRGvgNKSkgfGYLVFSSKEEATAALEMNEQT---IKARQIHVEISSK 906
                 67889999**********998775324435559**************998888...6666666555554 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 4
                  EEE--HHHHHHHHHHHHHHHH CS
       RRM_3   71 lelLeGeeEkeywkkiledkq 91  
                   e+L+ ++Ek+   kil+ kq
  KKY18758.1 1030 SEMLKQNAEKKV-DKILVGKQ 1049
                  356666666654.45555544 PP

>> Nup35_RRM  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00013      0.32       9      96 ..     740     820 ..     732     823 .. 0.81
   2 ?    2.9   0.0     0.041     1e+02      50      89 ..     865     904 ..     840     916 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
                 -EEEE-S-GG.GHHHHHHHHHTTS-BSS--CCC------------EETTEEEEEBS-HHHHHHHHTTTTEEETTEEEEEEE--HHHHHH CS
   Nup35_RRM   9 svivFGfpes.ianevlehFskfGeiledvqvlklgkglnpkpiptgenwvkltYksessaskAlqengtilngslivgvsyskaaakq 96 
                  v v  fp++ + n++   Fsk+G+i++          + + +  t   + +++++ +s+a+ A + +g +  ++l    + s++ +kq
  KKY18758.1 740 TVFVTNFPPEaDENYIRDLFSKYGNIVDIR--------FPSLKYNTHRRFCYVQFRLNSEAQAATELDGYLTGDNLKLVSKVSNPLNKQ 820
                 4777788765167888899********985........78889999999*********************9999987766666666665 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.041
                 ---EETTEEEEEBS-HHHHHHHHTTTTEEETTEEEEEEE- CS
   Nup35_RRM  50 piptgenwvkltYksessaskAlqengtilngslivgvsy 89 
                  + +++++ +l ++s+ +a+ Al+ n++ ++   i   + 
  KKY18758.1 865 VGNKSKGFGYLVFSSKEEATAALEMNEQTIKARQIHVEIS 904
                 3556788999****************99887665543333 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.86   2.2e+03      22      39 ..     316     333 ..     315     336 .. 0.88
   2 ?    0.8   0.0      0.48   1.2e+03      21      41 ..     347     367 ..     344     370 .. 0.82
   3 !   10.4   0.0    0.0004         1       5      39 ..     463     497 ..     459     499 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.86
      TPR_14  22 allrralalaPddaeawl 39 
                 al++ra  ++P+d ++w 
  KKY18758.1 316 ALYERAELRFPADKDLWE 333
                 589***99*****99997 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.48
      TPR_14  21 iallrralalaPddaeawlll 41 
                 + ll ra +++P++  +w ++
  KKY18758.1 347 LPLLARATRHCPWSGSLWSHY 367
                 679**********99999554 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.0004
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawl 39 
                 + ++++l ++G +d A++ +r ++++  +++e+w+
  KKY18758.1 463 RVYVRFLSESGSWDSARETFRGLVKTRGSSWEFWM 497
                 5689*****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       789  (0.0440069); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 7715.97
//
Query:       KKY18759.1  [L=406]
Description: putative exosome complex exonuclease rrp4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-14   50.9   1.2    2.7e-13   49.4   1.2    1.9  1  ECR1_N    Exosome complex exonuclease RRP4 N-terminal region
    0.00037   20.8   0.2    0.00081   19.7   0.2    1.6  1  KH_6      KH domain
  ------ inclusion threshold ------
      0.019   15.5   0.9       0.29   11.8   0.1    2.7  3  EXOSC1    Exosome component EXOSC1/CSL4


Domain annotation for each model (and alignments):
>> ECR1_N  Exosome complex exonuclease RRP4 N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   1.2   4.6e-17   2.7e-13       1      37 [.      50      88 ..      50      89 .. 0.88

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 4.6e-17
                EE-TT-EEEETTTSEE-TTEEE..ETTEEEESSSEEEEE CS
      ECR1_N  1 iVtPGevlttdeefmrGhGTYv..rggtiyAsvaGtvev 37
                +VtPGe++tt++++mrGhGTY     ++i+A++aGt+ +
  KKY18759.1 50 LVTPGETITTEQTWMRGHGTYTlpTSSSIHATLAGTLVR 88
                6********************65666667*******876 PP

>> KH_6  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2   1.4e-07   0.00081      25      45 ..     233     253 ..     215     254 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.4e-07
        KH_6  25 agpfeiavGlNGriWvksesp 45 
                 ag +++++G+NG+ Wv+++++
  KKY18759.1 233 AGEVDVVLGVNGFCWVSAHVE 253
                 389**************9975 PP

>> EXOSC1  Exosome component EXOSC1/CSL4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   4.8e-05      0.29       1      26 [.     103     128 ..     103     134 .. 0.95
   2 ?    0.9   0.0      0.11   6.7e+02      83     106 ..     148     171 ..     146     178 .. 0.87
   3 ?   -2.4   0.0       1.3   7.5e+03      24      30 ..     283     289 ..     264     343 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.8e-05
                 -S-TT-EEEEEEEEEESSEEEEEEEE CS
      EXOSC1   1 lPkegdvVLarvtrlrkkqalveils 26 
                 +P +gd+V++r+++++ ++  v+i++
  KKY18759.1 103 IPSIGDLVIGRIVEVQSRRWKVDISA 128
                 7**********************987 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.11
                 ECCSSSTT-GGCTEECTTEEEEEE CS
      EXOSC1  83 RatekdrvkviemfrpGDIvraqv 106
                 R t+ d+ ++ + f +G +v a+v
  KKY18759.1 148 RRTTADELQMRQFFNEGELVLAEV 171
                 789999999********9997766 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.3
                 EEEECTB CS
      EXOSC1  24 ilsvege 30 
                 i s e++
  KKY18759.1 283 ITSLEEQ 289
                 3333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2701.52
//
Query:       KKY18760.1  [L=274]
Description: hypothetical protein UCRPC4_g04822 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00047   20.0   0.8     0.0011   18.9   0.8    1.6  1  TBPIP        TBPIP/Hop2 winged helix domain
  ------ inclusion threshold ------
       0.14   10.7   5.0       0.21   10.1   5.0    1.4  1  Herpes_UL25  Herpesvirus UL25 family
       0.18   11.7   2.2       0.24   11.3   0.7    1.9  2  DUF1465      Protein of unknown function (DUF1465)
       0.49    9.7   5.3       0.66    9.3   5.3    1.2  1  DUF4407      Domain of unknown function (DUF4407)
        6.2    7.5   6.6        8.4    7.1   0.5    2.7  2  YabA         Initiation control protein YabA


Domain annotation for each model (and alignments):
>> TBPIP  TBPIP/Hop2 winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.8     3e-07    0.0011      19      51 ..      25      57 ..      23      60 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3e-07
       TBPIP 19 vqdvvanlqkklgKtavqkaLdeLvdegkiieK 51
                ++d+++nl++k++K+   k L eL +++ i  K
  KKY18760.1 25 ATDISQNLHNKVSKAQTIKLLKELHEKKEIENK 57
                68***************************9988 PP

>> Herpes_UL25  Herpesvirus UL25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.0   5.8e-05      0.21      57     133 ..     105     180 ..      31     204 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 5.8e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--EE............. CS
  Herpes_UL25  57 eLdnlaqkavalaeeierrlkevEellekiaeleaaaaaeeaaaarpplspssaspltavasaeevgkgkesrddei 133
                  eL+  +++ v+   e+ ++++e+E++ + +   ++ + +++++++ pp+++++++p+t+ +++ ++++g+e+ + + 
   KKY18760.1 105 ELQARMEELVKAKAELSAEVTEIESKFHTQNSETNISPNDNGKPV-PPTQNQNQNPDTNQTNSMPSKQGQEKLQADL 180
                  566666666777777778888888888877766788888888888.*****************99999998876654 PP

>> DUF1465  Protein of unknown function (DUF1465)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.45   1.6e+03     115     145 ..      29      60 ..      22      72 .. 0.61
   2 ?   11.3   0.7   6.6e-05      0.24      73     141 ..      74     143 ..      66     158 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHHHHHHT-SSXXXX..XXXXXX CS
     DUF1465 115 serLyervrrLdrelreeaeaaeaa.enpvae 145
                 s++L+++v + ++    ++ +++++ en++++
  KKY18760.1  29 SQNLHNKVSKAQTIKLLKELHEKKEiENKISA 60 
                 77888888776665554444444444555543 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 6.6e-05
                 TTSS-TTTTSSSS-------...-----------HHHHHHHHHHHHHHHHHHHHHHHHHT-SSXXXX.XX CS
     DUF1465  73 egelseeqaasekkrvklaaae.asdaeavaeLpeelqeLierserLyervrrLdrelreeaeaaeaaen 141
                 + ++s    +++  +++ a+    +d e+ +eL ++++eL+++  +L + v ++++++++++++++ ++n
  KKY18760.1  74 HNDISLLRQKEKSLKLEIATLGpVEDIESPSELQARMEELVKAKAELSAEVTEIESKFHTQNSETNISPN 143
                 567777777777888888888888999999*******************************999887654 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   5.3   0.00018      0.66     105     220 ..      51     194 ..      47     248 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00018
     DUF4407 105 ekeIdaelaeeqqeeakelkeqlaaa.............................ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk... 171
                 +keI+ ++ ++q  + ++  + l ++                             l+a+++el +  a+l+ae+++ e+++ +++ e +      +   
  KKY18760.1  51 KKEIENKISANQIVDLDTRISVLHNDisllrqkekslkleiatlgpvediespseLQARMEELVKAKAELSAEVTEIESKFHTQNSETN----ISPndn 145
                 58999999999999999999999999999777777777777777777777755555555555555555555555555555555554444....444323 PP

     DUF4407 172 gtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalraela 220
                 g+  + ++ + ++ ++++++    ++  ++l+a+l+  +++aa+r+++ 
  KKY18760.1 146 GKPVPPTQNQNQNPDTNQTNSMPSKQGQEKLQADLEIWKKIAANRKTIV 194
                 3333344445555555666666666666666666666666666666554 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.4     0.038   1.4e+02       4      48 ..      52      94 ..      49     102 .. 0.77
   2 ?    7.1   0.5    0.0023       8.4      25      53 ..     104     153 ..      97     181 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.038
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA  4 kelfdkleeleeqleelleeleelkeelaelleenaeLelenekl 48
                ke+ +k++   +q+ +l ++++ l+++++ l +++++L+le  +l
  KKY18760.1 52 KEIENKIS--ANQIVDLDTRISVLHNDISLLRQKEKSLKLEIATL 94
                55555555..37888899999999999999999999999987665 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0023
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH.....................X CS
        YabA  25 eelkeelaelleenaeLeleneklrerl.....................e 53 
                 +el+++++el++  aeL++e +++ +++                     +
  KKY18760.1 104 SELQARMEELVKAKAELSAEVTEIESKFhtqnsetnispndngkpvpptQ 153
                 68999999999999999999999998885555555555555555555541 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1505  (0.0839422); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 1656.50
//
Query:       KKY18761.1  [L=716]
Description: putative chitin synthase activator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-25   88.3  17.2    5.6e-07   30.0   0.0    7.0  7  Sel1      Sel1 repeat
  ------ inclusion threshold ------
      0.046   13.9   3.5       0.31   11.2   0.1    3.5  3  TPR_2     Tetratricopeptide repeat
       0.33   10.9   3.2       0.53   10.2   0.1    2.8  3  TPR_1     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   7.3e-09   4.4e-05       1      37 [.     190     225 ..     190     226 .. 0.93
   2 !   15.3   0.3     4e-06     0.024       2      38 .]     228     258 ..     227     258 .. 0.79
   3 !   10.0   0.0   0.00019       1.1       1      29 [.     259     286 ..     259     295 .. 0.85
   4 ?   -4.2   0.0         3   1.8e+04      31      37 ..     335     341 ..     330     341 .. 0.68
   5 ?    3.1   0.1     0.029   1.7e+02       1      37 [.     343     378 ..     343     379 .. 0.79
   6 !   13.3   0.1   1.7e-05       0.1       1      37 [.     380     416 ..     380     417 .. 0.89
   7 !   30.0   0.0   9.4e-11   5.6e-07       3      38 .]     420     453 ..     419     453 .. 0.96

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 7.3e-09
        Sel1   1 aeAmyrLGmfylylnGl.gvpkDpekAiewyekAAeqG 37 
                 + A++++G+++  ++G+ g   D+++A+++y +A e+G
  KKY18761.1 190 PRAQFMMGTWL--EFGKyGYRVDKKEAFHCYTRASERG 225
                 57******999..****77999**************99 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 4e-06
        Sel1   2 eAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                  A yr G  +  ++      Dp kAi++y+k A++Gd
  KKY18761.1 228 RAEYRIG--M--QFEN--SGDPFKAIKYYQKGADAGD 258
                 5777777..5..4554..679**************97 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00019
        Sel1   1 aeAmyrLGmfylylnGl.gvpkDpekAiew 29 
                 +++ yrLGm+   l G+ g p+D + +i++
  KKY18761.1 259 SASHYRLGMLS--LLGQhGQPQDFQAGIQH 286
                 6799****888..****99****9999886 PP

  == domain 4  score: -4.2 bits;  conditional E-value: 3
        Sel1  31 ekAAeqG 37 
                 ekAA +G
  KKY18761.1 335 EKAAYLG 341
                 6777665 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.029
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqG 37 
                 + A+ ++G+ y +++  g + +p + +++  +AA+qG
  KKY18761.1 343 SKAQVKMGTAYELCDL-GCDFNPALSLHYSALAARQG 378
                 5799999966666555.67778999999999999999 PP

  == domain 6  score: 13.3 bits;  conditional E-value: 1.7e-05
        Sel1   1 aeAmyrLGmfylylnGl.gvpk.DpekAiewyekAAeqG 37 
                 +eA ++     ++l G  gv + ++e A+ + e+AA+ G
  KKY18761.1 380 PEAEMAIS--KWFLSGYeGVFRkNEEMAFVYAERAASSG 416
                 57888888..999****999999*************998 PP

  == domain 7  score: 30.0 bits;  conditional E-value: 9.4e-11
        Sel1   3 AmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 A ++LG  y+++ G  vp D + A++wyekAA++G+
  KKY18761.1 420 AEFALG--YFHEVGIYVPVDLKVARQWYEKAARKGN 453
                 89****..999***********************97 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.41   2.5e+03      16      27 ..     210     221 ..     210     224 .. 0.84
   2 ?   11.2   0.1   5.2e-05      0.31       2      27 ..     228     253 ..     227     256 .. 0.90
   3 ?    1.0   0.0       0.1     6e+02      17      29 ..     438     450 ..     437     455 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.41
       TPR_2  16 dyeeAleafekA 27 
                 d +eA +++ +A
  KKY18761.1 210 DKKEAFHCYTRA 221
                 568*******99 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 5.2e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekA 27 
                 +a y++G+  +++gd+ +A+++++k 
  KKY18761.1 228 RAEYRIGMQFENSGDPFKAIKYYQKG 253
                 6779********************95 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.1
       TPR_2  17 yeeAleafekAle 29 
                 ++ A++++ekA +
  KKY18761.1 438 LKVARQWYEKAAR 450
                 5679******987 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.19   1.1e+03      17      27 ..     211     221 ..     205     224 .. 0.85
   2 ?   10.2   0.1   8.9e-05      0.53       1      26 [.     227     252 ..     227     254 .. 0.96
   3 ?   -3.7   0.0       2.2   1.3e+04       3       9 ..     261     267 ..     260     268 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.19
                 HHHHHHHHHHH CS
       TPR_1  17 ydeAleyyekA 27 
                  +eA  +y +A
  KKY18761.1 211 KKEAFHCYTRA 221
                 689*******9 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 8.9e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyek 26 
                 a+a y++G+ + + g++ +A++yy+k
  KKY18761.1 227 ARAEYRIGMQFENSGDPFKAIKYYQK 252
                 7899*********************9 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 2.2
                 HHHHHHH CS
       TPR_1   3 alynlGn 9  
                 ++y+lG+
  KKY18761.1 261 SHYRLGM 267
                 6899997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 4849.03
//
Query:       KKY18781.1  [L=1168]
Description: hypothetical protein UCRPC4_g04761 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.4e-126  420.1   1.6   7.9e-126  419.6   1.6    1.1  1  DUF726          Protein of unknown function (DUF726)
  ------ inclusion threshold ------
        4.9    7.8   7.3         12    6.6   0.0    3.3  3  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac
        6.1    6.4  10.7         43    3.6   7.8    2.7  2  Snf7            Snf7


Domain annotation for each model (and alignments):
>> DUF726  Protein of unknown function (DUF726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  419.6   1.6  1.3e-129  7.9e-126       4     343 .]     564     900 ..     562     900 .. 0.99

  Alignments for each domain:
  == domain 1  score: 419.6 bits;  conditional E-value: 1.3e-129
      DUF726   4 krylliglAglaGgaligltggLaaPlvaagigallaglGltgsaafLasvggsavitallgaagAklsvkkmkkrvkeikdFefiplseqirlksltv 102
                 ++y+++g+A+++Gg++igl++gL+aP+++ag++a ++++G++g+a+fL++vgg+a+it++ +aag  ++++  ++r++++k+Fe++pl++++rl +l++
  KKY18781.1 564 RKYVMMGIATVGGGLVIGLSAGLLAPVIGAGLAAGFTTIGVSGTAGFLGGVGGTALITSAATAAGGTIAIRASNRRTGHVKTFEYRPLHNNKRL-NLIL 661
                 89*******************************************************************************************8.**** PP

      DUF726 103 tvsislelsdeddvtapwralakaekdlYalkwEvelLkelGkaletilasealsvakqeilkrtvlaslvaaltWPlaLlkvakildnpwnvsleraa 201
                 tvs+++ +++ ddv+ p+++++++++d+Y+l wE+e+L+++G+++ +ila+eal++++q++l++t+l++l+a+l+ P+ L+k+++++dnpw+vsl+ra+
  KKY18781.1 662 TVSGWM-SGRVDDVRLPYSTVDPIMGDIYSLLWEPEMLQSMGDTI-NILATEALTQTIQQVLGSTILVALMASLQLPIVLTKLSYLIDNPWSVSLDRAN 758
                 ******.9*************************************.***************************************************** PP

      DUF726 202 kaGklLAdallsraqGeRpvtLiGfslGARviyvCLlelakkkalglvenvillGaPvtteakvwlkvrsvvsgRlvnvysenDylLgflyRtssaqf. 299
                 +aG +LAd l++r+ G+RpvtL+GfslG R i++CL+ela++ a+glv+nv+l+G P+++++ ++ ++r+ v gR+vn+y++nD++Lg+l+R++s ++ 
  KKY18781.1 759 AAGLILADSLIDRHLGNRPVTLVGFSLGSRLIFSCLRELANRGAYGLVQNVYLFGSPIVAKRDEYFRARTAVCGRFVNGYASNDWILGYLFRATSGGIm 857
                 *************************************************************************************************99 PP

      DUF726 300 rvaglqrieldvekvenvdvselvegHldYrkklkkilkaigle 343
                 rvagl ++e +++++envdvs++v+gH++Yr  ++++l+++g+e
  KKY18781.1 858 RVAGLAPVE-GIPRLENVDVSSMVNGHMAYRAAMPRLLREVGWE 900
                 *********.7******************************996 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.7     0.026   1.6e+02      13      64 ..     344     397 ..     341     420 .. 0.78
   2 ?   -1.2   0.3      0.53   3.2e+03      24      51 ..     916     943 ..     910     951 .. 0.79
   3 ?    6.6   0.0    0.0019        12      52      75 ..     983    1006 ..     976    1017 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.026
  HIP1_clath_bdg  13 kqlsvarqaqeeverekkeleeelerlkeeaerkle..eqkeelekLkreleak 64 
                      q+++  ++ e+ + +kk+l++ le++++  ++++    q++ +++ ++ + ++
      KKY18781.1 344 YQMTAELETAESAKSTKKDLAKALESMTKWGQQMMVrlYQHMDIDSAEQVMIEQ 397
                     58888889999999***********99876666555366777777766665555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.53
  HIP1_clath_bdg  24 everekkeleeelerlkeeaerkleeqk 51 
                     + +  ++el +e++++++eae++ e+++
      KKY18781.1 916 DHAHRQRELIREIDEARKEAEQRPEKKR 943
                     5566778899999999999998877765 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0019
  HIP1_clath_bdg   52 eelekLkreleakraelarlkssL 75  
                      + +e++krele+++ e+++l+s+L
      KKY18781.1  983 FDIEAIKRELESEMIEVKQLESTL 1006
                      6799******************99 PP

>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   7.8    0.0072        43      60     112 ..     343     396 ..     285     401 .. 0.74
   2 ?    2.2   0.0      0.02   1.2e+02      50      99 ..     989    1038 ..     988    1040 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0072
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHCTCCHHHHHHHHH CS
        Snf7  60 ldnqlanleqvslaienlksnkevlnamkq.gakamkamnkkvdidkidklmde 112
                 +++++a+le++  a  ++k+  + l++m + g + m   ++ +did  +++m e
  KKY18781.1 343 IYQMTAELETAESAKSTKKDLAKALESMTKwGQQMMVRLYQHMDIDSAEQVMIE 396
                 566666666666666666666666666643366677777999999999999977 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.02
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Snf7   50 kkryekqldqldnqlanleqvslaienlksnkevlnamkqgakamkamnk 99  
                  k+++e+++ ++++  ++l  + l+i ++ +  ++l++ k++  a++++++
  KKY18781.1  989 KRELESEMIEVKQLESTLPPMKLDISSADNPRDMLRQTKSSEGALQSQQS 1038
                  78899999999***********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       864  (0.0481901); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.52
# Mc/sec: 6749.05
//
Query:       KKY18782.1  [L=308]
Description: putative riboflavin kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.8e-13   48.4   0.0    1.7e-12   47.6   0.0    1.4  1  Flavokinase  Riboflavin kinase


Domain annotation for each model (and alignments):
>> Flavokinase  Riboflavin kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   9.6e-17   1.7e-12       2      87 ..      99     211 ..      98     219 .. 0.86

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 9.6e-17
                  TS-EEEEEEEES-SSCH.TTTT--EEEEE-...S-B-GTSEEEEEEEE...............EEEEEEEETTTSSE......EEEEET.T-.-S--T CS
  Flavokinase   2 grpyslsgkVvkGkkrG.relgfpTaNlel...ekllpkkGVYavrvk...............gvaniGvrptfknk......vEvhil.df.sedly 72 
                  ++p++++gkVv+G++    e+g+pTaNl+    ++ll  +GVY+++++               ++++iG  ++   +      v vhi+ df s+ + 
   KKY18782.1  99 PYPIRFDGKVVRGRGKSqTEFGLPTANLSGvadDHLLRLSGVYFGWASvipkdgtdvdadwheAIITIGPSQYAAPSivvkkvVLVHIIsDFgSATFF 196
                  589**************99**********558666669*************************99999977775443443456899*995554558** PP

                  TSEEEEEEEEEEEE- CS
  Flavokinase  73 gkelrvellkflRpe 87 
                  g++++v +++fl+p+
   KKY18782.1 197 GSKVKVIVMGFLHPM 211
                  ************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 1982.12
//
Query:       KKY18783.1  [L=436]
Description: putative malic acid transport protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-82  274.9  45.6      1e-81  274.7  45.6    1.0  1  SLAC1     Voltage-dependent anion channel


Domain annotation for each model (and alignments):
>> SLAC1  Voltage-dependent anion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.7  45.6   5.7e-86     1e-81       1     320 [.      80     412 ..      80     416 .. 0.93

  Alignments for each domain:
  == domain 1  score: 274.7 bits;  conditional E-value: 5.7e-86
       SLAC1   1 hftpawFaivMGtgilalllka.lp.a.rglriislilfllalvlfllllvlyllrfilypeavrkelrhpveslflgtfpmglltilnglll..vl.p 93 
                 +ft+aw++++M+tg+lall+   +p + +glr i+ ++++++l+lf+++++++llrf+l+++++ ++l+h  e++f++tf+++++t+++ ++   ++ +
  KKY18783.1  80 YFTWAWYTLTMSTGGLALLI-FaQPfQfPGLRGIGMAVYVINLILFAAVTSCMLLRFFLHRGTFAASLTHEREGFFFPTFWLSIATLITSTQRyvIPdN 177
                 69******************.54677469***********************************************************99999655555 PP

       SLAC1  94 gewlatlalvllWigvllslltavvvvfllftekeekleeitpawllpvvgllvvallgallaesqnpslqllgilvvslllwglGlllalvlfvlyly 192
                 +++l++++  ++W ++l+++l+a+++++++f  +   l++++p+w+lp++++++++++++++ae+q++  ++  i++ +l+++glGl +++++++ ++ 
  KKY18783.1 178 DTNLLWAIQLAYWAYALMTFLLAIGQYSFVFAAHSFGLQTMMPTWILPIFPIMLTGTIASVIAETQPDISAIP-IVISGLACQGLGLSVSFMMYAHMVG 275
                 59999999999*********************99667**************************9988887777.************************* PP

       SLAC1 193 rlithklppaelrptlfiplGplgqgalallllgkaapk..........aaevlkvlalllalflwglglfwllvavlsvlslpvrlkfslswWaftFP 281
                 rl++++lp++e+rp+lf+++Gp++++alal+++++ +p+              ++++a+++a flw+l+l+w+++av++v+  p ++ f+l+wWa++FP
  KKY18783.1 276 RLMQSGLPNREHRPGLFMCVGPPAFTALALIGMANGLPDdfdfdtngtiDVAFIRAMAIIIAGFLWALSLWWFFIAVIAVIASP-PQYFHLGWWAMVFP 373
                 *************************************888***9777554444577**************************76.999*********** PP

       SLAC1 282 lgalalatielgkaleseafkvlgtillvllvlvwllvl 320
                 +++++lati+l++++ese++k+++t+++v +++++ +v+
  KKY18783.1 374 NTGFTLATITLANEFESEGVKIFATVMSVGILIAYSFVI 412
                 ***********************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 3503.01
//
Query:       KKY18784.1  [L=370]
Description: putative 2og-fe oxygenase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-23   81.3   0.0    1.3e-22   80.1   0.0    1.6  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
      9e-21   74.8   0.0    1.4e-20   74.2   0.0    1.3  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.0   1.5e-26   1.3e-22       2      99 ..     222     324 ..     221     325 .. 0.90

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 1.5e-26
                   --EEEEEEE-S------.....---EEEEEESSSEEEEEEE-TT---EE.EETEEEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTGSE CS
  2OG-FeII_Oxy   2 eellvlnyypphpdpev.....ilglgahtdaslltillqddvgglevf.kdgkwlrvppvdnslivniGdallflsngryksvlHrVlpvnegerR 92 
                   + +l+lnyypp p+p          +g htd +l+til qd  ggl+v+ +dg+w++ +p d++++vniGd l+ ++n +y s+ Hr+++   ge R
    KKY18784.1 222 DAALALNYYPPIPEPLTqsseeQVSIGSHTDFQLFTILWQDRAGGLQVLnRDGQWINAKPIDGTFVVNIGDYLQRITNDKYVSTVHRAQNRSGGE-R 317
                   67899*******999866677777799*********************956677***********************************555555.* PP

                   EEEEEEE CS
  2OG-FeII_Oxy  93 vsiayfi 99 
                   vs+ +f+
    KKY18784.1 318 VSMPFFF 324
                   *****97 PP

>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   0.0   1.6e-24   1.4e-20       1     105 [.      42     152 ..      42     162 .. 0.90

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 1.6e-24
      DIOX_N   1 iPvidlspl.sdd.edraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKekl..akspsfrGysrlgeektdg.kkldwkesfd 94 
                 iP+id+s + sd+  +r+ava+q+++A+++ Gffy++ hg+p+++++ +++a+ +FF++P + K+    ++s+ + G++++++++ +  +  d++e+f+
  KKY18784.1  42 IPLIDVSGIfSDSfTERKAVADQVHAAATNNGFFYIKSHGIPSDVTESAYQACLDFFRQPSSIKNMAnaQNSQFYNGWKPPQSQRINDvESIDVRETFS 140
                 9******9998888***************************************************998788899************999********** PP

      DIOX_N  95 lgtelpeddp..a 105
                 + ++ p  dp  +
  KKY18784.1 141 WTYN-PRYDPavT 152
                 ***9.66667444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2827.37
//
Query:       KKY18785.1  [L=460]
Description: putative major facilitator superfamily transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-15   54.3  13.6    1.4e-12   47.2   1.8    2.1  2  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.14   11.7   0.2       0.48    9.9   0.1    1.9  2  DUF2140          Uncharacterized protein conserved in bacteri
        1.2    9.1   7.2       0.26   11.3   0.2    2.4  2  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   1.8   2.4e-16   1.4e-12     107     187 ..     160     247 ..     155     267 .. 0.87
   2 !   12.0   5.0   1.2e-05     0.074      27     183 ..     279     439 ..     256     456 .. 0.72

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 2.4e-16
       MFS_1 107 aaliadwfpkeergraigllsagfslGailgpllggllasslg.......Wravfyilaivsllafvlfllllpeepperkrkspkee 187
                 a++   w++k+e g+ ++++s ++ +G++++  l +++++ l+       Wr+vf+i +i+++++++ +++++p++p++   +   +e
  KKY18785.1 160 AYVSGSWYKKTELGKRTAIFSCAAYVGTMIAGYLQSAVLAGLNgryglsaWRWVFIIDGIITVIVAIYGMIFFPDTPHRTTAFYFSKE 247
                 678899**********************9999999988855556**********************************9998887777 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 1.2e-05
       MFS_1  27 lgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw..lllvlrvlqGlgagalfpagaaliadwfpkeergrai 123
                 +++s+ +++ + t+     +v++++    +d  G r + ++  l+ +l+++++l++ +++  l +v+ +++Gl  g l p+ +a++  + +++ + ra+
  KKY18785.1 279 HTWSVYQVNNIPTAINGWNIVMIMLENIYVDATGCRMIAVAVNLAILLFGTICLVVWNIPlgLRIVSYMFAGL-DGPLSPLYMAWANILCSQDAQVRAL 376
                 447777777777775555788888889999999****666666666666577774445443156777777777.59*********************** PP

       MFS_1 124 gllsagfslGailgpllggllasslg.......Wravfyilaivsllafvlfllllpeepperkrks 183
                  ++ + +s+Ga+l+ ++  +l+           +ra+  +++++++ ++v   + l+e +  +k+++
  KKY18785.1 377 TIAIM-NSCGAALTTIIQQFLYPVTDapqyhkgFRASLGFICGMCIWVVV---VRLFEMKAVKKKEA 439
                 77665.****************8888999999999998888888888866...44445555544444 PP

>> DUF2140  Uncharacterized protein conserved in bacteria (DUF2140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1     8e-05      0.48       2      78 ..     209     287 ..     208     294 .. 0.76
   2 ?   -2.2   0.0      0.42   2.5e+03       7      34 ..     409     437 ..     405     452 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 8e-05
     DUF2140   2 kWkwaFli..Llalllllvavvlvrvfapseestekssekekkseaeftitttkkqlnalinkylkkkqkdeklkykve 78 
                  W+w+F+i   +++++++  ++++  +  ++++ + s+e +++  + f  tt  k  n +++ ylk  +k++   y+v 
  KKY18785.1 209 AWRWVFIIdgIITVIVAIYGMIFFPDTPHRTTAFYFSKEDKDRAVERFWNTTVGKVANTVMQLYLKYDTKHTWSVYQVN 287
                 5******83346666666666666666666666668888888999999999999999********77777777777775 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.42
     DUF2140   7 FliLlalllllvavv.lvrvfapseeste 34 
                 F + l+++ +++++v +vr+f+ +  +++
  KKY18785.1 409 FRASLGFICGMCIWVvVVRLFEMKAVKKK 437
                 66667777777776515677777766654 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   4.3e-05      0.26      29      88 ..     168     229 ..     167     241 .. 0.73
   2 ?    0.0   2.1      0.14   8.5e+02      39      62 ..     315     341 ..     308     393 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.3e-05
  Phage_holin_3_6  29 eakragsgagllgaagvlallalllllvalalala.alwlaali.vaavllvlagvlalvgl 88 
                      +++ +g+  +++  a++++ + +++l  a++++l+  + l+a   v+++  ++++++a+ g+
       KKY18785.1 168 KKTELGKRTAIFSCAAYVGTMIAGYLQSAVLAGLNgRYGLSAWRwVFIIDGIITVIVAIYGM 229
                      578899************************99996444444444455555555555555554 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.14
  Phage_holin_3_6  39 llgaagvlallalllllvala...lal 62 
                      ++++a+ la+l ++++++ ++   l+l
       KKY18785.1 315 MIAVAVNLAILLFGTICLVVWnipLGL 341
                      444444444444444444443336444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3206.11
//
Query:       KKY18786.1  [L=352]
Description: putative 2og-fe oxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-20   72.6   0.0    4.9e-20   71.9   0.0    1.4  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
    1.3e-11   45.2   0.0    2.7e-11   44.2   0.0    1.5  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.0   5.5e-24   4.9e-20       5      99 ..     192     288 ..     188     290 .. 0.89

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 5.5e-24
                   EEEEEE-S------..---EEEEEESSSEEEEEEE-TT---EEEETE.EEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTGSEEEEEEE CS
  2OG-FeII_Oxy   5 lvlnyypphpdpev..ilglgahtdaslltillqddvgglevfkdgk.wlrvppvdnslivniGdallflsngryksvlHrVlpvnegerRvsiayf 98 
                   +++ yypp p +e+  + glgah+d s lt+ lqd+v  lev+++++ w++ pp++n+++ n+G+ l+  +ng+++ + HrV+  ++g +R+s+ +f
    KKY18786.1 192 MRALYYPPTPVDENshNVGLGAHSDFSWLTLVLQDNVPALEVLNEDGiWVEAPPQPNTFVCNVGQYLERQTNGKFPATVHRVR-NKTGLERYSLPFF 287
                   566788**97666556**************************988888**********************************9.555555******9 PP

                   E CS
  2OG-FeII_Oxy  99 i 99 
                   +
    KKY18786.1 288 L 288
                   7 PP

>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0     3e-15   2.7e-11      37     117 ..      50     143 ..      44     144 .. 0.82

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 3e-15
      DIOX_N  37 hgvpeelidelfeaareFFalPeeeKekl..akspsfrGysrlgeektdg.kkldwkesfdlgtelp..........eddpagkplegpnqwPe 117
                  ++++ l++++f+++++FF+l +++K+    +k+p+ rGy+++ge ++d+ +kld+ke+f +g  +            ++p  + +   n+wP+
  KKY18786.1  50 SDIDSPLLEDTFKLLERFFKLDLDTKMDAhvQKNPAIRGYEPMGETRLDPrTKLDIKEAFTMGDCFLepeqnytgktGSHPPSNITMAQNIWPS 143
                 679999**********************9989999****************************9754234455444444445555888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       218  (0.0121591); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.52
# Mc/sec: 2026.38
//
Query:       KKY18787.1  [L=415]
Description: putative major facilitator superfamily transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-11   42.0  15.5      3e-10   39.6   8.2    1.8  2  MFS_1     Major Facilitator Superfamily
    0.00018   20.5   1.1    0.00018   20.5   1.1    1.8  2  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
      0.099   12.7   1.0        5.8    7.0   0.0    2.6  2  PgaD      PgaD-like protein
       0.99   10.2   5.0        5.5    7.8   4.5    2.5  2  HXXEE     Protein of unknown function with HXXEE motif


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   8.2   6.7e-14     3e-10     167     353 .]     110     307 ..      71     307 .. 0.77
   2 !   14.9   0.7   2.1e-06    0.0095     103     181 ..     271     355 ..     270     371 .. 0.71

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 6.7e-14
       MFS_1 167 lfllllpeepperkrkspkeee............kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllall 253
                 +++++lp + p+ +  s+ e+              g  ++++++++++++ ++  + ++  +ll  +g s + t+ pl+  + lg++  + ++ll + +
  KKY18787.1 110 FVYIFLPNDIPSARFLSDHEKAkaierlranqtgTGSREFKWSQILELIFEPKTYL-WIGLSLLLNVGASVTNTFGPLI-LDGLGFD-KYKTSLLNMPF 205
                 66677777777777777777767777777666665667777777888888888553.66666666679999*******7.*******.56666666666 PP

       MFS_1 254 alvgailallagrlsdrlgrrrrlllallllllaalglallavt..ssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslgga 350
                 +++ + + lla++ +++   + + l+al l ++a l+++++ +   s+ ++ll++++l+ f +g   ++++ ++ + a++ +   +++l+n  +s+g +
  KKY18787.1 206 GALQVLIILLASYAAQKCRIKSAVLIALTLPVIAGLAVLYVVPRsdSHEAALLVGYYLLAFLFGGNPIIVAWIVGNTAGTTKKSVIMSLYNAGSSAGNI 304
                 666666677888888997777777777777777777777777775577777777**********99999999999999********************* PP

       MFS_1 351 lgp 353
                 +gp
  KKY18787.1 305 IGP 307
                 **8 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 2.1e-06
       MFS_1 103 fpagaaliadwfpk.eergraigllsagfslGailgpllgg...llasslgWravfyilaivsllafv.lfl.lllpeepperkr 181
                 +p+++a+i+  +++ ++++  ++l++ag+s+G i+gpll +   +   + g r+v  i+  ++++ ++ l+  ++l   + +r+ 
  KKY18787.1 271 NPIIVAWIVGNTAGtTKKSVIMSLYNAGSSAGNIIGPLLFSskdAPGYHPGLRSVLAIFVTFAAVTLIqLANlMFLNKMQAKRRV 355
                 5888899999999989999999****************98866655556667777666666666666653330444444444443 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.5      0.67     3e+03     400     438 ..      75     116 ..      71     117 .. 0.57
   2 !   20.5   1.1   4.1e-08   0.00018     220     408 ..     129     312 ..     121     346 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.67
                 HHHHHHHHHHHCHHH...T-HHHHHHHHHHHHHHHHHHHHS- CS
    Sugar_tr 400 flisllfpiiteaig...ggyvflvfaglavlfiifvfffvp 438
                 +l+ + f +i++++    g  ++l+ a  + +++ fv++f+p
  KKY18787.1  75 ILVWVYFLQILDKSVlgyGSIFGLQKATHLQVSAPFVYIFLP 116
                 556666666666666222333344444555678888888887 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 4.1e-08
                 HHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HHHHHHHHHHHHHHHHHHHHHHHHS-S CS
    Sugar_tr 220 adrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks..llvtiivgvvnfvatfvaiflvdrfGR 316
                 ++ ++ e  ++++ +  +++ +w+++l+ +    ++ ++++l ++ + +G  +   ++p i++ lg++k    l ++ +g++++++++ a +   ++  
  KKY18787.1 129 EKAKAIERLRANQTGTGSREFKWSQILELIF-EPKTYLWIGLSLLLN-VGASVTNTFGPLILDGLGFDKYktSLLNMPFGALQVLIILLASYAAQKCRI 225
                 3444444455555554444889999999944.666778888888877.588999***************999*************************99 PP

                 HHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 317 RtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpi 408
                 +  +l+ ++   i+ + +    ++++ + ++ + +++v+++l ++lf+ g   +++ +v  ++ +  +s+ +++  a +   n++  llf  
  KKY18787.1 226 KSAVLIALTLPVIAGLAV---LYVVPRS-DSHEAALLVGYYLLAFLFG-GNPIIVAWIVGNTAGTTKKSVIMSLYNAGSSAGNIIGPLLFSS 312
                 999998888877777666...4555555.467****************.555555566699*************999999999999998864 PP

>> PgaD  PgaD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0013       5.8       2      47 ..      55     100 ..      54     121 .. 0.86
   2 ?    3.7   0.3     0.013        59      79     108 ..     327     359 ..     258     373 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0013
        PgaD   2 IieerrllpwskrlldsilTllaWagwiyLfvpllvllawllglel 47 
                 +++e+++ + +k++   +l +l+W+ ++ ++ + ++  + ++gl+ 
  KKY18787.1  55 VVTEEDNKSIRKKTDRVVLAILVWVYFLQILDKSVLGYGSIFGLQK 100
                 6788899999*********************999999888888764 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.013
        PgaD  79 alilvviavlLilWaklnrv...rfkakkrrvk 108
                 a+ +++ av+Li +a+l  +   ++k++ r  k
  KKY18787.1 327 AIFVTFAAVTLIQLANLMFLnkmQAKRRVRNGK 359
                 344556666666666665552004444444444 PP

>> HXXEE  Protein of unknown function with HXXEE motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.2   5.3e+03      46      60 ..      72      85 ..      18     110 .. 0.59
   2 ?    7.8   4.5    0.0012       5.5      38     109 ..     262     335 ..     193     336 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.2
       HXXEE 46 vnallvwlilalall 60
                v+a+lv +++ l++l
  KKY18787.1 72 VLAILV-WVYFLQIL 85
                222222.22333443 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0012
       HXXEE  38 filvlvlvvnallvwli.lalallakrepllglallafllvnlltHiaqalvlks.YnPGlvTalllflPlaiw 109
                 ++l++++  n ++v++i + +a + k+++++ l+ ++    n++  ++++      Y+PGl + l +f+ +a++
  KKY18787.1 262 YLLAFLFGGNPIIVAWIvGNTAGTTKKSVIMSLYNAGSSAGNIIGPLLFSSKDAPgYHPGLRSVLAIFVTFAAV 335
                 3333344445455566657889999******************9999999999999************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.53
# Mc/sec: 2370.97
//
Query:       KKY18788.1  [L=497]
Description: putative n-sulfoglucosamine sulfohydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.1e-41  140.4   0.0    3.3e-39  135.1   0.0    2.3  1  Sulfatase     Sulfatase
    2.9e-05   23.8   0.4      0.002   17.8   0.0    2.6  2  Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosp
    4.5e-05   23.7   0.5    0.00013   22.2   0.3    1.9  2  DUF4976       Domain of unknown function (DUF4976)
     0.0044   15.7   0.0     0.0053   15.4   0.0    1.1  1  DUF229        Protein of unknown function (DUF229)
  ------ inclusion threshold ------
      0.028   15.1   0.1      0.072   13.8   0.1    1.6  1  Sulfatase_C   C-terminal region of aryl-sulfatase
      0.045   12.8   0.0        0.1   11.7   0.0    1.5  2  DUF1501       Protein of unknown function (DUF1501)
        0.1   12.8   0.0       0.44   10.7   0.0    1.9  2  rve           Integrase core domain


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1   0.0   1.3e-42   3.3e-39       1     308 [.      10     301 ..      10     302 .. 0.86

  Alignments for each domain:
  == domain 1  score: 135.1 bits;  conditional E-value: 1.3e-42
                 EEEEEEEESSE-TTGSGGGTTTSCSSHHHHHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTT.HHCTTTS-HHHHHHHHTT-EEEE CS
   Sulfatase   1 pnvvliladdlgagdlglyggktattpnldrlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgg.gglpqteatLpellkeaGYntaa 98 
                 +n++l++addlg  +lg+yg k   tpn+d+la++g++f+ +++++++cs sr+ + tg+  h++g +  ++  +      +++t p l+ + GY t++
  KKY18788.1  10 KNILLLIADDLGK-NLGCYGVKDISTPNIDALAANGILFSHAFTSTASCSASRSVIYTGLHTHQNGQYGLCGERHhFTTFDKVDTAPLLFSRLGYLTGV 107
                 6**********77.9***************************************************99988877787888999**************** PP

                 EEES-SCCSGGGSHHCCTTTSEEEETSSSCHHTCCCCCCCCCECTCCCTTTTCSHHHHHHHHHHHHHHCCC.TSSEEEEEEE-TTSSSTCTCGGHTCCG CS
   Sulfatase  99 igkwhlgwssrqsvyknrgfdrflgfptgsaalkdpekseyngevlrvppeggysddrlldealefllarn.dkpfflylatlapHappeapdeyakky 196
                 igk h+g++s                + +++  ++++ +++                +++++      a    +pffl++ ++ pH    +  ++ ++ 
  KKY18788.1 108 IGKVHVGPDSVY------------P-WDVREPSWTRD-VSWVA----------DRAGAFFEKSKSS-SADGgPQPFFLTVGYIDPHR-DRSRSGF-GNH 179
                 *******99332............2.44777777765.44433..........5678999999999.78888**************8.3444444.333 PP

                 STTTTCCCCCCH.....................HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHB CS
   Sulfatase 197 atffddgseaar.....................qlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtr 274
                 ++f+   +                            ++y++s+++ D++ig +l +Le++g+++ntlv+f+SD+g+           +k+ +  + g+ 
  KKY18788.1 180 EGFDARVK---DikyspfdvaiptfindldesrFEFAEYYQSISRLDQGIGMILSELEKAGQAENTLVIFLSDNGPPF-------INSKT-TLFDAGVC 267
                 44443333...1444677888888888888888899****************************************77.......45777.******** PP

                 EEEEEEETTTSHCEEECSEEEGGGHHHHHHHHTT CS
   Sulfatase 275 vPllvwwpgekaprvseelvshiDlfptildlag 308
                  P++++ pg     ++ + +s +D++pt+l++ag
  KKY18788.1 268 LPMIIRQPGYSTGFTNPNMISYVDILPTLLEWAG 301
                 *********************************9 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   7.7e-07     0.002      20     239 ..      33     258 ..      26     286 .. 0.52
   2 ?   -1.6   0.1      0.61   1.6e+03      89     146 ..     321     381 ..     297     443 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7.7e-07
                   TSHHHHHHHHHSEEESEEE-SSS-SHHHHHHHHHHSS-HHHHS--SSSEEETTTTEEEEEETTTTGG..........................GGGC CS
  Phosphodiest  20 llpnlaaLakegvsapnlrpvfPtlTfpnhaslvTGlyPgeHGivgNtfydrktgeyvvfvtededa..........................prww 90 
                    +pn++aLa +g+ +  +  +  +   ++ + ++TGl+  ++G +g        ge   f+t d+ +                            w 
    KKY18788.1  33 STPNIDALAANGILFS-HAFTSTASCSASRSVIYTGLHTHQNGQYG--LC----GERHHFTTFDKVDtapllfsrlgyltgvigkvhvgpdsvYPWD 122
                   5788888888888888.44444444445677788888888888888..33....2222555555542222334333333333332222222222222 PP

                   TTS-HHHHHHHTHTTCEEEESETTTTSEBTTCT.SC.TBHHSBTCT.CSTTS....CHHHHHHHHHHHHH..HHCHTHSHHHHHCT.SSE.SEEE.E CS
  Phosphodiest  91 qgepiwdtaakarglkaaalfwpgsevdystyyylvsetppryleddfnakv....pledkvdkavlqtw..ldaafakvvlekel.ekp.dlll.v 178
                   + ep w + +       a +f+  s+    +      + +      +f  +v    p++d+  + +  +   +da  ++        + p d+ + +
    KKY18788.1 123 VREPSWTRDVSW-VADRAGAFFEKSKSSSADG-----GPQ------PFFLTVgyidPHRDRSRSGFG-NHegFDARVKD------IkYSPfDVAIpT 200
                   223333322222.1112222222222222211.....122......222222111122222221111.11223333322......122222443313 PP

                   EECCCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---EEEH.T CS
  Phosphodiest 179 yleetDtvgHkfGpdspevedalrrvDkaigdLlealderglsaetniilvSDHGmadvs.d 239
                    ++++D +  +f     e  + ++r+D+ ig +l++l++ g +++t +i +SD G   ++ +
    KKY18788.1 201 FINDLDESRFEF----AEYYQSISRLDQGIGMILSELEKAGQAENTLVIFLSDNGPPFINsK 258
                   446666666666....479999*******************************998877644 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.61
                   GCTTS-HHHHHHHTHTTCEE..EESETTTTSEBTTCT.SC.TBHHSBTCT...CSTTS....CHHH CS
  Phosphodiest  89 wwqgepiwdtaakarglkaa..alfwpgsevdystyyylvsetppryled..dfnakv....pled 146
                   ++ ++p+w  +++   ++ +  + +wp+    +++y+    +++   ++   +f+a++    ++e+
    KKY18788.1 321 HVLEDPTWPQLVFG-SHTFHeiTNYWPTRFMRTRKYK----YHRNIAWRLdfPFSADLygslTWEG 381
                   56668888888888.6665556888885555555443....3444444223333333344443333 PP

>> DUF4976  Domain of unknown function (DUF4976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.8   4.5e+03       5      18 ..     308     321 ..     305     359 .. 0.59
   2 !   22.2   0.3     5e-08   0.00013      63     103 .]     420     460 ..     410     460 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.8
     DUF4976   5 mqGksllpllkgkk 18 
                 + G+s+lp+l+  +
  KKY18788.1 308 LPGNSFLPILRSSH 321
                 56788888877543 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 5e-08
     DUF4976  63 elyDlkkDpkelknlyddpeyeevvkelkkkleelrkkykd 103
                 elyDl++Dp+e+++l +d++ +e+v+ ++++le+ +++++d
  KKY18788.1 420 ELYDLEEDPDEVRDLAKDEKNAELVAGFRERLEQWQRDTND 460
                 9*********************************9998876 PP

>> DUF229  Protein of unknown function (DUF229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.1e-06    0.0053     306     344 ..     214     252 ..     200     362 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.1e-06
      DUF229 306 dkfnllealDedllkylkklekkgllentlvlllsDHGl 344
                 ++++ +++lD+ + ++l++lek g+ entlv++lsD G 
  KKY18788.1 214 EYYQSISRLDQGIGMILSELEKAGQAENTLVIFLSDNGP 252
                 677888999***************************994 PP

>> Sulfatase_C  C-terminal region of aryl-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   2.8e-05     0.072      53      93 ..     418     457 ..     386     464 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.8e-05
                  CEEEEETTT-TT--S-TTSTTCCHHHHHHHHHHHHHHHCCC CS
  Sulfatase_C  53 pPllFdlerDpsEkyplsaespeykevlkeikkaveehkkt 93 
                  p  l+dle+Dp E ++l++ +++ +e+++  ++ +e+++++
   KKY18788.1 418 PEELYDLEEDPDEVRDLAK-DEKNAELVAGFRERLEQWQRD 457
                  557***************6.578888889999999998875 PP

>> DUF1501  Protein of unknown function (DUF1501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.7   4.2e+03     255     286 ..     175     207 ..     158     208 .. 0.82
   2 ?   11.7   0.0   3.9e-05       0.1     269     302 ..     218     251 ..     211     258 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.7
     DUF1501 255 gWDtHsnlekahkkla.kelDqalaaLlkdLkq 286
                 g+ +H++  +++k+     +D a+ ++++dL++
  KKY18788.1 175 GFGNHEGFDARVKDIKySPFDVAIPTFINDLDE 207
                 566788888888887778999999999999986 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.9e-05
     DUF1501 269 lakelDqalaaLlkdLkqrGllddTlVvwagEFG 302
                  +  lDq++   l++L++ G  ++TlV+++++ G
  KKY18788.1 218 SISRLDQGIGMILSELEKAGQAENTLVIFLSDNG 251
                 5678*************************99855 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00017      0.44      31      85 ..     205     261 ..     186     271 .. 0.91
   2 ?   -1.7   0.1       1.2   3.1e+03      78     105 ..     333     360 ..     332     361 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00017
         rve  31 ddfsrlilaealsdemdastvlalleravarfggve..pervlsDngseytskafre 85 
                 +d sr+ +ae++ + +  ++ ++++   +++ g+ e    ++lsDng+ +++++++ 
  KKY18788.1 205 LDESRFEFAEYYQSISRLDQGIGMILSELEKAGQAEntLVIFLSDNGPPFINSKTTL 261
                 588***********************************99**********9987665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.2
         rve  78 ytskafrefladlgirvsftrpgrpqdn 105
                 + s++f+e+ + + +r  +tr+++ + n
  KKY18788.1 333 FGSHTFHEITNYWPTRFMRTRKYKYHRN 360
                 67999*****************997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.34s 00:00:00.98 Elapsed: 00:00:00.52
# Mc/sec: 2864.17
//
Query:       KKY18789.1  [L=430]
Description: putative xaa-pro aminopeptidase family enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-07   31.0   0.0    2.6e-07   30.6   0.0    1.2  1  Peptidase_M24  Metallopeptidase family M24
  ------ inclusion threshold ------
      0.062   12.9   0.5       0.11   12.1   0.5    1.3  1  SLATT_6        SMODS and SLOG-associating 2TM effector domain
      0.093   13.0   0.0       0.19   12.0   0.0    1.4  1  DUF3692        CRISPR-associated protein


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   4.3e-11   2.6e-07       3     196 ..      18     238 ..      16     279 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 4.3e-11
                    HHHHHHHHHHHHHHHHHH..HHTTCB.HHHHHHHHHHHHHHHTTTCEESSSSEEEEGGGGGSTTTBC...........S.SSB--TTEEEEEEEEE CS
  Peptidase_M24   3 irkaariasaaleavlea..ikpgvt.erelaaeieattlkrhgarglafppivasgenaavlhytp...........n.drvlkegdlvlidaga 83 
                    +rk ++ a a++++ +++  i pg t +++++ +++ + +++++++ + +p ++ + +n+ +   t            + dr++  +dl+ +d+g+
     KKY18789.1  18 YRKMQETAWAMIKEGFSErvISPGKTtTEDVEWWLRSK-IQEMNYTTWFHPSVTILLPNSTMGEQTQnqnqlgssnsqTlDRPITFNDLLHVDFGI 112
                    68888888888888863334999986699*******77.9***********9999999*9996665533333333233335558999********* PP

                    EETTEEEEEEEEEECSSGSHH.......HHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTB.........CCGBSSCSEEEESS.SSS CS
  Peptidase_M24  84 eydgyasDitrTvlvGkftpe.......qrelyeavleaqeaaikavkpGvtlseidaaarevlesagl.........akffphglGHgvGl.evh 162
                       g  +D+ +  +v ++++         +  +  + + q+ +++ +  G t+++i +   + ++s+g+         + +  h+ G  +G+ ++ 
     KKY18789.1 113 TALGLNTDTQHLAYVLSPNASpssipasLQTGLSKANRLQDIVVSNLNLGLTGNQILNNSLAQMRSEGIsgriyshpiG-DWGHSAGTLIGMtNLQ 207
                    *************765333323345556788999*******************************99888777777744.4488999999998999 PP

                    EEEEEESSSTTCSSB--TTBEEEEEE..EEEEETTT CS
  Peptidase_M24 163 degpsvsresndgrkleeGmvftiEp..giyfapge 196
                    deg  v    + + ++ + m +++E   + y ++++
     KKY18789.1 208 DEGVPVL---G-DLPILPKMYYSVELyaEHY-VEEW 238
                    9843355...3.7999999999999855333.3344 PP

>> SLATT_6  SMODS and SLOG-associating 2TM effector domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.5   1.8e-05      0.11     126     164 ..     223     261 ..     216     271 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.8e-05
     SLATT_6 126 efkevaiskqillsdwyahyklFsehqikwieeqkkftf 164
                  +++v +  + ++ +w a+ k+F e + +w+ee+k + +
  KKY18789.1 223 MYYSVELYAEHYVEEWNATMKFFLEEDVHWVEENKGWDW 261
                 57778888888999********************99887 PP

>> DUF3692  CRISPR-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.1e-05      0.19      33      97 ..      21      85 ..      19      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.1e-05
                HHHHHHHHHHHT-GGGEEES--TT-HHHHHHTS---GGGGGSB---SEEEEEEE.TTTHHHHHHH CS
     DUF3692 33 awkaikelvekyGpdvliyPslrgnplvdawllekleeeletalipnrfvlilpkeeeaeelaee 97
                + +++++++++   + +i+P     + v+ wl++k++e   t  ++ +++++lp++  +e+++++
  KKY18789.1 21 MQETAWAMIKEGFSERVISPGKTTTEDVEWWLRSKIQEMNYTTWFHPSVTILLPNSTMGEQTQNQ 85
                568999999999999***************************************99855554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.52
# Mc/sec: 2473.67
//
Query:       KKY18790.1  [L=291]
Description: hypothetical protein UCRPC4_g04770 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-34  116.8   0.0    1.1e-33  116.3   0.0    1.1  1  Methyltransf_2   O-methyltransferase domain
  ------ inclusion threshold ------
      0.011   16.4   0.0      0.025   15.3   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
       0.08   13.7   0.0       0.17   12.6   0.0    1.6  1  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.0   1.9e-37   1.1e-33      10     207 ..      58     266 ..      53     267 .. 0.90

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 1.9e-37
                     HTS--..HHHHHS--..HHHHHTSSHHHHHHH...HHHHHTTHHHHHHHHHHSS-GGG-..SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHH CS
  Methyltransf_2  10 egrnqiifkkafGis..lfeaikrdeeerakf...nkglqessslvakkvleafdlegl..kslvDvGGGtGalakaivsayPtikvivfDlpeV 97 
                     e++n++ ++ af ++  +fe+  ++++   +f   +k+l+ s   ++++vl+ +  e++   ++vDvGG +G +  a ++++P +k +v D+p++
      KKY18790.1  58 EEKNHCAWNIAFDTElpIFEYLVHQPDRAGRFaetMKALTTSEGYNVRHVLAGYSWESIghGTVVDVGGSIGHTSIALAEKFPDLKFVVQDFPDI 152
                     78999*******999889*****999999888222445566778999********88873358******************************** PP

                     HHHHHHHS-----TTEEEEES-TTTS---.--SEEEEESSGGGS-HHHHHHHHHHHHHH--TT-EEEEEE----TTS---HHHHHH....HHHHH CS
  Methyltransf_2  98 veaAkehlsageeervefvgGdffkdslP.eaDaillkrvlhDwsdekcvklLkrvkkalpagGkvivveavlgadpsgeletelv....dliml 187
                     v+a ++ l +++++r++f++ dff  + P +aDa++l  +lhD+sd++ v +Lk++  a ++g k++v++avl++ ++ ++++e +    dl m+
      KKY18790.1 153 VAAGESSLPSALKDRITFQAHDFF-TPQPvHADAYFLRFILHDHSDQRAVDILKNLLPAFKPGSKLLVMDAVLPEPGTMPKTEERQvrlmDLEMM 246
                     ************************.88888*******************************************99877766655555566***** PP

                     HCSS-----HHHHHHHHHHC CS
  Methyltransf_2 188 vqteGkeRteaeyeellsea 207
                      + + keR+ +++++l+++a
      KKY18790.1 247 TNFNSKERDIEDWQDLFTRA 266
                     *****************987 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   4.2e-06     0.025       1      96 [.     121     214 ..     121     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.2e-06
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      v+d+G   G++++ala+++++ k++  D+ ++ ++a ++ + ++ l  +++f+ +d+ + +    + D+ ++++ lh  sd+++ ++lk++  +
       KKY18790.1 121 VVDVGGSIGHTSIALAEKFPDLKFVVQDF-PDIVAAGESSLPSA-LkdRITFQAHDFFTPQ--PVHADAYFLRFILHDHSDQRAVDILKNLLPA 210
                      89*****************99*******9.77888888888654.347********96643..34679999988888889999999*****999 PP

                      EEEE CS
  Methyltransf_25  93 Lkpg 96 
                       kpg
       KKY18790.1 211 FKPG 214
                      9997 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.9e-05      0.17       1      98 [.     122     216 ..     122     217 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.9e-05
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl..kdir..evldnir 90 
                      +++G+  G+++ al+ek+pd+++++ D+   +  + +  l +      ++++++a d +  ++  + D+ ++ + lh    +  r  ++l+n+ 
       KKY18790.1 122 VDVGGSIGHTSIALAEKFPDLKFVVQDFPDIVA-AGESSLPSAL---KDRITFQAHDFFTPQPV-HADAYFLRFILHDHsdQ--RavDILKNLL 208
                      69*************************988888.4444444443...47899999987766665.99999999999988433..3358899999 PP

  Methyltransf_12  91 klLkpgGr 98 
                       + kpg +
       KKY18790.1 209 PAFKPGSK 216
                      99998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 1756.60
//
Query:       KKY18791.1  [L=460]
Description: putative f-box and wd40 domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.026   15.4   0.9        0.7   10.9   0.8    3.4  3  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.29   5.2e+03       2      21 ..      83     103 ..      82     111 .. 0.66
   2 ?   10.9   0.8   3.9e-05       0.7       4      38 .]     226     261 ..     223     261 .. 0.85
   3 ?   -1.1   0.0      0.24   4.3e+03      20      38 .]     370     389 ..     355     389 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.29
                 EEEEEEESS.SSEEEEEEETT CS
        WD40   2 qclrtltGH.ssvtslafspd 21 
                 q+ ++l+ H s+v  +af+p 
  KKY18791.1  83 QTRQILKVHtSNVDVVAFQPG 103
                 566789999777855555554 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 3.9e-05
                 EEEEESS.SSEEEEEEETTSSEEEEE..ETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasG..sdDgtvriWd 38 
                 + tl+GH + v  + fs+d +++  G   +D+t r Wd
  KKY18791.1 226 VFTLSGHtDAVMWVGFSSDDKLI--GtvAWDRTMRTWD 261
                 6799***666****9*******7..63369*******9 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.24
                 TTSSEEE..EEETTSEEEEEE CS
        WD40  20 pdgawla..sGsdDgtvriWd 38 
                 + g+ la  + + Dg+  ++d
  KKY18791.1 370 DQGRKLAffTTG-DGSAEVYD 389
                 455554334677.99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3437.16
//
Query:       KKY18792.1  [L=321]
Description: putative arginase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-23   82.5   0.0    4.4e-23   82.2   0.0    1.1  1  Arginase  Arginase family


Domain annotation for each model (and alignments):
>> Arginase  Arginase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.0   2.4e-27   4.4e-23       3     271 ..       7     310 ..       5     318 .. 0.76

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 2.4e-27
                 EEEEEEE--TTTSSSGGGGGHHHHHHHHHHTSB...THCHEETTTTE.SCCSEEEEEEEEE--SSCHHHH........HHHHHHHHHHHHHTTCEEEEE CS
    Arginase   3 vallGvPfdaagsgrpGarfGPraireasarle...ealeynlelgv.leelkivdlgdvavtpvdneev........leqieeavaeilkagklpivl 89 
                 v++  vP d  gs  pG +++P+a  +     +   + l+ ++++++ l++  ++ +++ +   v+ne+v        + +i++++++ +   ++ ++l
  KKY18792.1   7 VSITYVPADC-GSVIPGKSKAPKAFQDVGIARKlrdAGLS-SVSEHHpLDSPATYVATTFTPGRVRNEDVniavcqrvCSSITQSLNSTIPPSSFQLIL 103
                 77889*****.*************9998544443221222.2222223222222222222222224444332221111555555555555559999*** PP

                 ESSGGGHHHHHHHHHHHH.....STTEEEEEESSS----SSCTTTB.SSSTTSHHHH................HHHHTSECGCEEEEEEE-STCSH... CS
    Arginase  90 GGDHsialgilralaeky.....gkplgvihfDAHaDlrtpetegs.gnshGtpfrr................aaeegllkpkklvqiGirsvdne... 163
                 GG+  +  +il+a+ +++     + ++g++ +DA +Dl  p   gs g+  G+ + +                ++ e + ++++ v +Gi+  +++   
  KKY18792.1 104 GGECCMLPAILSAFWKHAdsqspPVRVGLVYIDADTDLSSPTNPGStGIFAGMNMTHlirspgalqsmeqfsrPSGEPVCDSSNTVLFGINMSSPGnkq 202
                 ******************99999889**************994443146677878878888888888888888888999999*********99999997 PP

                 .HHHHHHHTTSEEEEHHHHHHHHHHHHHHHHHHHHTCTTSEEEEEEEGGGBBTTTSTSSSS-BSS-B-HHHHHHHHHHHHCHSEEEEEEEE-B-GGGSS CS
    Arginase 164 .eyelakelgirvitmreidelglkavveeilervgaeedpvylSfDiDvlDpavaPGtGtpepgGltlrellallrelaeklnlvgaDvvEvnPaldt 261
                  ++ ++ +   +vi+   +   + ++ ++e+l++++++ d +++ +D+D +Dp++ P    p   G+t++e++++l+ + ++++++g+ v+EvnP+ d+
  KKY18792.1 203 aHFAYLFDNDYKVISSASVAC-EPEQRAREALKYLEDKVDVIMVHLDVDSIDPQMFPLANVPNFTGVTFEEMMRALKVFLGSEKVAGLTVAEVNPDHDP 300
                 767777778999***999965.77899*********9*****************************************6677****************9 PP

                 TTTHHHHHHH CS
    Arginase 262 eaeqtarlaa 271
                   e+  rl  
  KKY18792.1 301 GLEMVGRLTD 310
                 5565555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2225.06
//
Query:       KKY18793.1  [L=499]
Description: putative heterokaryon incompatibility [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-23   82.4   0.6    3.5e-22   79.3   0.6    2.3  1  HET       Heterokaryon incompatibility protein (HET)


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.6     2e-26   3.5e-22       1     110 [.      29     148 ..      29     173 .. 0.76

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 2e-26
         HET   1 YeaLSYvWgdsk..........ekeeievng.....klleltenledalqvlrklgerylWiDaiCInQdddk..ekskqvqlmadIYsnAelvivalg 82 
                 Y+aLSY+Wg ++          +       +        el ++ +da+ ++r+lg +ylWiDa+CI+Qd+ +  ++++++++ma+ Y+nA+lvi+a  
  KKY18793.1  29 YAALSYCWGPPSkltkttpstfS-------QyhkyiPFNELSRTPRDAIVIARQLGFQYLWIDALCIIQDEADkkDWATEAAKMAQYYENASLVIAASR 120
                 9***********66655444440.......144444558999***************************976666************************ PP

         HET  83 sesedsgllalealralkkekleekeie 110
                 +es++sg l+ ++lr   +  + ++ i 
  KKY18793.1 121 AESSHSGVLQRRNLRVSPQFAQHKCAIR 148
                 ****998888888876666555553333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 3133.60
//
Query:       KKY18794.1  [L=220]
Description: putative glutathione s [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-13   50.9   0.0    4.2e-13   49.9   0.0    1.6  1  GST_N_4   Glutathione S-transferase N-terminal domain
    2.1e-06   27.4   0.0    4.2e-05   23.3   0.0    2.2  2  GST_C_6   Glutathione S-transferase, C-terminal domain
    2.8e-05   24.4   0.1    5.4e-05   23.5   0.1    1.6  1  Tom37     Outer mitochondrial membrane transport complex prot
    8.5e-05   22.5   0.0    0.00016   21.7   0.0    1.4  1  GST_C_2   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_4  Glutathione S-transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   9.3e-17   4.2e-13      28      89 ..       2      70 ..       1      86 [. 0.90

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 9.3e-17
     GST_N_4 28 aspkgklPfiel.ngel.....liadsefiieflkekg..vdldaelseeqkadaralkalveeklynal 89
                +sp+gklP+i++ ++       li+ds++i e+l+++g  +dl+++ls+ +ka++ a++al+e+kly++ 
  KKY18794.1  2 KSPRGKLPYIRIhKE-DssdsqLISDSTLITETLVRNGmlNDLNSGLSPVEKAQDAAVRALLEDKLYFYQ 70
                69********99544.348999****************999999***********************986 PP

>> GST_C_6  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.052   2.3e+02       7      21 ..      57      72 ..      53      76 .. 0.82
   2 !   23.3   0.0   9.4e-09   4.2e-05      19      64 .]     163     208 ..     159     208 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.052
     GST_C_6  7 aLselLgdkkyFfG.d 21
                a+  lL+dk yF+  d
  KKY18794.1 57 AVRALLEDKLYFYQvD 72
                66789*******9855 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 9.4e-09
     GST_C_6  19 fG.dkPtslDAlvFGhlaqilytplespelrellkeypNLvayceri 64 
                 +G ++P+++DA++FG++a+  ++ l  p+  +l+k++p  ++y++ri
  KKY18794.1 163 LGgKQPSEADATLFGFIASA-NVCLAGPDSMKLVKSFPTVMDYARRI 208
                 66699***************.556788889***************98 PP

>> Tom37  Outer mitochondrial membrane transport complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   1.2e-08   5.4e-05      27      86 ..       3      67 ..       1     106 [. 0.88

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.2e-08
       Tom37 27 sptgeLPaLkdge....gtwi.sgfdnIveylrkkseesdldaslsakekadatAlislleskla 86
                sp g+LP+++  +     +++ s+   I+e l +++  +dl+++ls+ eka+ +A+ +lle+kl+
  KKY18794.1  3 SPRGKLPYIRIHKedssDSQLiSDSTLITETLVRNGMLNDLNSGLSPVEKAQDAAVRALLEDKLY 67
                9*********944456645555************9988889**********************97 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   3.5e-08   0.00016      10      68 ..     137     206 ..     126     207 .. 0.64

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 3.5e-08
                 HCCHCHHHCTTT---SS...........CTTC.S--HHHHHHHHHHHHHHHH..HHS-.---TT-HHHHHHHH CS
     GST_C_2  10 qldaaldaleahLadsp..........flfGd.qptlaDialapflvrlraa..gpgf.direaypnlraWle 68 
                 ++ +++ al   L  s+          +++G+ qp+ aD++l++f+  + +   gp+   + +++p + ++ +
  KKY18794.1 137 EAWEHINAL---LNESRrsasdkdaafWVLGGkQPSEADATLFGFIASANVClaGPDSmKLVKSFPTVMDYAR 206
                 444444433...332222223455788777777****************999655544466678887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1570.49
//
Query:       KKY18795.1  [L=188]
Description: hypothetical protein UCRPC4_g04775 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.056   13.9   0.4        0.4   11.2   0.0    2.2  2  SeleniumBinding  Selenium binding protein


Domain annotation for each model (and alignments):
>> SeleniumBinding  Selenium binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.2e-05       0.4      22      49 ..      21      48 ..      16      68 .. 0.83
   2 ?    0.3   0.1     0.053   9.5e+02      23      44 ..     159     181 ..     153     187 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.2e-05
  SeleniumBinding 22 ylgivsavvesdnvdkilkaleekvkek 49
                     yl++vs ++e+++v + ++a+ e  ++ 
       KKY18795.1 21 YLDVVSHATEGHDVIETINAMYEATRAE 48
                     79*******************9988776 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.053
  SeleniumBinding  23 lgivsavvesdnvdkilk.alee 44 
                       +iv +v +++ vd  ++ ++e+
       KKY18795.1 159 HDIVEEVRRAQGVDITINdIVEV 181
                      58999999999999766514444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1298.16
//
Query:       KKY18796.1  [L=461]
Description: hypothetical protein UCRPC4_g04776 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 2951.41
//
Query:       KKY18797.1  [L=580]
Description: putative amino acid permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-77  261.8  35.4    1.4e-77  261.4  35.4    1.1  1  AA_permease    Amino acid permease
    1.3e-29  103.3  37.7    1.3e-29  103.3  37.7    1.7  2  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
      0.026   14.9   0.2       0.13   12.7   0.2    2.2  1  DUF4014        Protein of unknown function (DUF4014)


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.4  35.4   2.3e-81   1.4e-77       2     473 ..      57     537 ..      56     541 .. 0.88

  Alignments for each domain:
  == domain 1  score: 261.4 bits;  conditional E-value: 2.3e-81
  AA_permease   2 vlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasi 99 
                  ++vi+lgg iG+glf+++g+ l+ +Gp++++la+ ++++++f+v ++++e+ + +p+sg f  ya rf++p+l+f+ G++ ++ w + +a+e t  s 
   KKY18797.1  57 IHVISLGGQIGAGLFISTGKNLRDGGPASLFLAFFVVCTCVFAVLQTVSEMTISFPVSGNFIDYADRFVDPALAFAAGFSMWLGWTAIIAAEATFFST 154
                  789*********************************************************************************************** PP

  AA_permease 100 liqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeega 197
                  ++++w   +d   + v+ ++fl+v++ii  + +kv++ +e+i++++k++a+++f+  g  ++ g++p+ +     ++++g      + +g        
   KKY18797.1 155 IVNYW--AQDRVNEAVWLTIFLIVMVIIFSLPAKVFAWFEYITSILKVLALLIFMFAGLAIVLGAGPTGRVHHGETWQDGK----AFRNG-------- 238
                  *****..777777*********************************************77777777777763445555555....48888........ PP

  AA_permease 198 fknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplinav 295
                  fk+f      +++a+     ++ iagE+k+P+ s+  a   + ir+  fY++s++ligllv+ +++ l+ +s   aspfvi++ e+g+++l++++n+v
   KKY18797.1 239 FKGFGNSVLLAILAIGDNTFTGFIAGEAKNPRYSVSHAAFLIPIRVSAFYLISIILIGLLVSPTNDRLFGGSGIDASPFVIALDEAGIPGLPDFLNVV 336
                  888877777778888888888889********************************************99888888********************** PP

  AA_permease 296 iltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfRka 393
                  i+  +  +a  sly+asR+l ++++++l+P +++kv+ +g+P +a+l+++i+++++  ++  + +  +vfn+l  i+    ++vw++i++++ rfR a
   KKY18797.1 337 IICGVAAIAAESLYIASRMLRAMSHQRLIPDWVAKVDAKGRPRAALLITTIVAFILTYINLCAGG-ITVFNWLAQIASTGYFMVWVVISITSFRFRAA 433
                  ********************************************************988888888.8******************************* PP

  AA_permease 394 lkyqgrsi.eelgfkaallplgvilvlaaliiillilalyay..........................ltvkkgpkdwgaasfaaaylivllfliilv 464
                  lk+q+  + +++ +  + +  ++ l+l+ ++++++  ++y++                          l+  ++p    a +f++   +++l+   ++
   KKY18797.1 434 LKAQNDPLfNQVYAWKCSFWPLPPLWLLTCCSLYTGCSFYLSlypivslsplpfpfpssstiqtsnskLQGSTTP---TAYYFFQYMFGLILIFSTGI 528
                  *****9763666677788888899999999999999999998677777777777766666666665444433333...55555555556666666666 PP

  AA_permease 465 gvklhvknk 473
                  ++kl++++k
   KKY18797.1 529 AYKLIYRTK 537
                  666666665 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3  37.7   2.2e-33   1.3e-29       6     405 ..      57     478 ..      52     500 .. 0.81
   2 ?   -1.2   0.3      0.12     7e+02      82     102 ..     510     530 ..     495     534 .. 0.77

  Alignments for each domain:
  == domain 1  score: 103.3 bits;  conditional E-value: 2.2e-33
  AA_permease_2   6 afalvigsvigsgifvkn..laasggpa.lilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsv 98 
                      ++++g  ig+g f+++  ++  ggpa l+l +++++ ++ +avl +  E++  +p sg  + y+ ++  + +af ++++ w+++ + + +  + 
     KKY18797.1  57 IHVISLGGQIGAGLFISTgkNLRDGGPAsLFLAFFVVCTCV-FAVLQTVSEMTISFPVSGNFIDYADRFVDPALAFAAGFSMWLGWTAII-AAEAT 150
                    557889999******998878888***96677777777777.8999999999866*********************************77.66788 PP

  AA_permease_2  99 aasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.....stetdtffpngwpg 189
                    ++s+++n +++d +++   ++++ i+ li+ ++i ++  k  a++  i+ ilk+l  l+i+  +gl++v g g +       ++++++ f ng +g
     KKY18797.1 151 FFSTIVNYWAQDRVNE---AVWLTIF-LIVMVIIFSLPAKVFAWFEYITSILKVL-ALLIFMFAGLAIVLGAGPTGRvhhgeTWQDGKAFRNGFKG 241
                    9999999998754443...3343333.444444446788899************5.7777777999999998888775555555555688889999 PP

  AA_permease_2 190 vllgllivlwsfdGfesaanvseevkk.k.dvpkaifigllivlvlyllvniaflg.vvpddei....anlsnlgsvaalffeavggkvvaiivvi 278
                    + ++ l ++++++   +   ++ e+k+ +  v+ a+f++ + v+ +yl   i++   v+p +      + ++   s++ + ++ +g + +  ++++
     KKY18797.1 242 FGNSVLLAILAIGDNTFTGFIAGEAKNpRySVSHAAFLIPIRVSAFYLISIILIGLlVSPTNDRlfggSGID--ASPFVIALDEAGIPGLPDFLNV 335
                    9**************************8768****************9987776553777777646443334..356999******9********* PP

  AA_permease_2 279 lialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas.saaynfllsvsslgliisyllliigalilr 373
                    +i+ +++ ++   ++++sr+l+a++ ++ +P++ akv+++g+p +a+ +t iv++il+ + l a   + +n+l+ ++s g++ ++ +++i+ +  r
     KKY18797.1 336 VIICGVAAIAAESLYIASRMLRAMSHQRLIPDWVAKVDAKGRPRAALLITTIVAFILTYINLCAGgITVFNWLAQIASTGYFMVWVVISITSFRFR 431
                    ******************************************************99998888777789**************************** PP

  AA_permease_2 374 kkrphlkr............pgkilvaiigalfllfll...valffp 405
                       + ++             ++  ++ ++ ++++l++    ++  +p
     KKY18797.1 432 AALKAQNDplfnqvyawkcsFWPLPPLWLLTCCSLYTGcsfYLSLYP 478
                    99998866455555654444444688899999999985222444444 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.12
  AA_permease_2  82 wfnwfayvpvlasilsvaasy 102
                     +++f+y+++l +i+s +++y
     KKY18797.1 510 AYYFFQYMFGLILIFSTGIAY 530
                    467889999999999888887 PP

>> DUF4014  Protein of unknown function (DUF4014)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   2.1e-05      0.13       8      33 ..     157     182 ..     153     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.1e-05
     DUF4014   8 nyprqsrfkealffplflilmvpisp 33 
                 ny  q r  ea+++ +fli+mv i  
  KKY18797.1 157 NYWAQDRVNEAVWLTIFLIVMVIIFS 182
                 99********************8854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       912  (0.0508673); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.48
# Mc/sec: 3622.44
//
Query:       KKY18798.1  [L=436]
Description: putative fructosyl amino acid oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-38  133.5   0.0    1.5e-38  133.3   0.0    1.0  1  DAO            FAD dependent oxidoreductase
    2.1e-07   31.1   0.1    8.4e-07   29.1   0.0    2.0  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    1.2e-05   24.7   0.0     0.0033   16.7   0.0    2.1  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0026   17.0   0.0     0.0047   16.2   0.0    1.4  1  FAD_binding_3  FAD binding domain
     0.0035   17.4   0.0      0.011   15.8   0.0    1.7  2  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
     0.0091   16.5   0.0       0.02   15.4   0.0    1.6  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.013   15.1   0.0      0.023   14.4   0.0    1.4  1  ApbA           Ketopantoate reductase PanE/ApbA
      0.018   15.3   0.0      0.053   13.8   0.0    1.8  2  TrkA_N         TrkA-N domain
      0.021   15.3   0.0      0.053   14.0   0.0    1.6  2  NAD_binding_7  Putative NAD(P)-binding
      0.035   13.4   0.8       0.25   10.5   0.0    2.4  3  Thi4           Thi4 family
      0.063   12.7   0.1       0.26   10.6   0.0    1.9  2  GMC_oxred_N    GMC oxidoreductase
       0.13   11.5   0.0       0.34   10.1   0.0    1.6  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.3   0.0     1e-41   1.5e-38       2     352 .]      17     382 ..      16     382 .. 0.77

  Alignments for each domain:
  == domain 1  score: 133.3 bits;  conditional E-value: 1e-41
                 EEEECTSHHHHHHHHHHHHTT...EEEEESSSSTTSSGGGSSE.EEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHH CS
         DAO   2 vviiGGGiiGlstAyeLarrg...VtllekgdiagsgaSgrns.gllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeel 96 
                 ++i+GGG +G stAy+L+rrg   Vt+l++   ++s+a g+   +++++    +pe+  +a l+ ea e +++ ++  g    y+r+G l+ a++  +l
  KKY18798.1  17 ILIVGGGTFGTSTAYHLSRRGynsVTVLDRWAAPSSEAAGNDInKVIRAD---YPEQ-LYASLATEATEIWKDPNGMFG--GLYHRCGWLIAASGI-SL 108
                 89******************99*********9999866666552666663...4544.677**************9998..56*********9765.59 PP

                 HHHHHHHHHHHHTTTTE.EEEEHHHHHHHSTT.ST...TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEC..EEEE..EEEETCEEEEE..E CS
         DAO  97 ealdkllallleaglda.elldaeevrelepa.lp...gllgalfypdtgqvdpakltaalaraaealGveilegte..vtgl..eeedgkvwgve..r 184
                 + ++ +++ ++++g +  + +++  + +++pa +    g++  +++ ++g++d++ ++  +a+a  ++Gv+ + g    v+ l  +e     ++    +
  KKY18798.1 109 PFIESSVETAGKLGFEQaQPMSPGAIHKRWPAfTGemdGWKS-YWNSSAGWADARTALSRMASATMEAGVKYISGDAgyVKQLlfDE----TSTCIgaK 202
                 999999999999***7758899977******97333435553.99******************************332233321111....22222222 PP

                 ECTEEEEEEEEEEE--GGGHHHH.HTTCTTTSEEEEEEEEE.EEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSE........... CS
         DAO 185 ttpgendaadavVnaaGawsdll.gllkeldlpispvrgqv.lvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtad........... 270
                  ++g+ + ad v++aaGa +  + ++ ++l    ++ +g+   ++ +ls ++v+++   ++p+ d+ + g+ + p  dg +++G+              
  KKY18798.1 203 CADGNARFADVVIVAAGASAASVlDMKGQL----VA-KGHTvGHI-QLSPEEVEKY--KNIPIVDHLEEGILFPPQNDGVIKFGAVNFvtnyakshpdv 293
                 22344456699********98552333433....33.44431333.3333445555..555558999************999**97779***9999999 PP

                 .....EETTCSSTSCSHHHHHHHHHHHHHHSGGGCGEEE..EEEEEEE.ETTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHHHH CS
         DAO 271 .....eesgdddpevdeedidellealrklfPqlgdvlr..kwaGlrp.lpdglpligetpgvkglylatGhsghGltlapatGkllael 352
                        ++++  +++  +  +++++l+ ++P+l+d ++  ++ +  + +pd ++li ++p +++l la G s hG+++ p++Gk+++++
  KKY18798.1 294 slpryRSDNPN-DDIPKPHEMQIRKWLKGIIPELADREWfeTRICWDAdMPDYNFLISPHPSHPNLKLAVGGSAHGFKFFPVIGKYIVDM 382
                 99764333444.4888889999***********999774446677777668********999*************************986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   5.6e-10   8.4e-07       1      55 [.      19      75 ..      19      85 .. 0.88
   2 ?   -1.8   0.0       2.6   3.8e+03      24      49 ..     191     220 ..     180     231 .. 0.57

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 5.6e-10
                   EE--SHHHHHHHHHHHCCTE.EEEEE-SSSSSSGGG-EECETT.CEECTS---EEET CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagf.dvlllekrdrlGGraasyevpg.vrvdygahifhgs 55
                   IvG+G +G ++Ay+L+++g+ +v++l++   ++  aa +++++ +r+dy+ + +++ 
     KKY18798.1 19 IVGGGTFGTSTAYHLSRRGYnSVTVLDRWAAPSSEAAGNDINKvIRADYPEQLYASL 75
                   9*******************78*******************988*****99988775 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.6
                    EE-SSSS.SSGGG-EECE..TT.CEECTS- CS
  NAD_binding_8  24 llekrdr.lGGraasyev..pg.vrvdyga 49 
                    l++  +  +G ++a+ +    + v+v  ga
     KKY18798.1 191 LFDETSTcIGAKCADGNArfADvVIVAAGA 220
                    555543337777766644332224444444 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.2e-06    0.0033     139     185 ..      11      59 ..       5      82 .. 0.84
   2 !    6.0   0.0    0.0041       6.1      63     121 ..     173     237 ..     132     258 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.2e-06
                  SS-TSEEEEES-SHHHHHHHHHHHHHT-E.EEEEESSSSSS.TTS-HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxxx RF
  Pyr_redox_2 139 kllpkrivvvGgGyiGvElAaalaklgke.vtlveardrll.raldkel 185
                  ++++++i++vGgG  G+ +A +l++ g++ vt++++   +  +a + ++
   KKY18798.1  11 AQMERSILIVGGGTFGTSTAYHLSRRGYNsVTVLDRWAAPSsEAAGNDI 59 
                  67889***********************99****997766655555555 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0041
                  HHHHCCCCHCCT..CEEEEESCEEEEETEEECTCEEEEEESEEEE---EEE-BC.TCTTC.....T CS
                  xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx....xx RF
  Pyr_redox_2  63 lnqgielllgee..vvkidpgkkkvklekkkegdeekiaydklvlAtGssprdl.gipGv....ae 121
                  +++g++++ g    v ++ +++ + ++   k+ d++   +d +++A G+s+    +++G     + 
   KKY18798.1 173 MEAGVKYISGDAgyVKQLLFDE-TSTCIGAKCADGNARFADVVIVAAGASAASVlDMKGQlvakGH 237
                  4455555555333244444555.56666677799999999********876666599998444322 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.2e-06    0.0047       3      40 ..      16      54 ..      14      62 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.2e-06
                   EEEEE--SHHHHHHHHHHHHTTHH.EEEEESSSSSCCSS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvr.vvlvekrsttvvlp 40
                   ++lIVG+G  G ++a  Ls++G + v+++++++  + + 
     KKY18798.1 16 SILIVGGGTFGTSTAYHLSRRGYNsVTVLDRWAAPSSEA 54
                   689*******************98699****99987765 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   7.3e-06     0.011      12      48 ..      14      50 ..       8      76 .. 0.86
   2 ?   -2.2   0.0       2.6   3.9e+03      76      87 ..     211     222 ..     204     234 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.3e-06
                  T-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHH CS
  Shikimate_DH 12 ekkvlliGaGemaelvakhLlakgvkkvvvaNRtler 48
                  e+ +l++G G  ++ +a hL+++g+++v+v+ R  + 
    KKY18798.1 14 ERSILIVGGGTFGTSTAYHLSRRGYNSVTVLDRWAAP 50
                  6789****************************97665 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.6
                   -SEEEE-SSSSS CS
  Shikimate_DH  76 advvisatasee 87 
                   advvi+a +++ 
    KKY18798.1 211 ADVVIVAAGASA 222
                   688888777654 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.3e-05      0.02       1      47 [.      16      64 ..      16      88 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-05
                EEEEECSSHHHHHHHHHHHHTT.SEEEEEESSSSSS.TTSSHHHHHHHH CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelg.kkVtvversdkll.rllDeeaskilq 47
                ++++vGgG+ g   A  l++ g ++Vtv++r   +   + ++++ k+++
  KKY18798.1 16 SILIVGGGTFGTSTAYHLSRRGyNSVTVLDRWAAPSsEAAGNDINKVIR 64
                689*******************78*******999998888888888875 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.5e-05     0.023       1      43 [.      17      59 ..      17      82 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.5e-05
                EEEES-SHHHHHHHHHHHHHTHC.EEEE-SCHHHHHHHHHCEEE CS
        ApbA  1 iailGaGaiGsllaakLakagad.vtlilrsrrlealkknGlrl 43
                i+i+G G  G+  a++L++ g++ vt+++r++ + + + +G ++
  KKY18798.1 17 ILIVGGGTFGTSTAYHLSRRGYNsVTVLDRWA-APSSEAAGNDI 59
                89*****************66666*******9.44445555554 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.5e-05     0.053       1      48 [.      17      66 ..      17      71 .. 0.84
   2 ?   -2.7   0.0       4.5   6.7e+03      63      77 ..     211     225 ..     207     253 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.5e-05
                EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSE.EEES- CS
      TrkA_N  1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreegle.vvvgd 48
                i+i+G G++G+s a  Ls+ g+++v+v d+  +   e++ + ++ v+ +d
  KKY18798.1 17 ILIVGGGTFGTSTAYHLSRrGYNSVTVLDRWAAPSSEAAGNDINkVIRAD 66
                79*****************77799*****988888888777766566666 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.5
                 ESEEEE-SSSHHHHH CS
      TrkA_N  63 adaviaatgddeani 77 
                 ad+vi+a+g  +a++
  KKY18798.1 211 ADVVIVAAGASAASV 225
                 677777777766665 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.6e-05     0.053       7      54 ..      14      66 ..      12     100 .. 0.76
   2 ?   -3.3   0.0       8.1   1.2e+04      32      39 ..     212     219 ..     192     251 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.6e-05
  NAD_binding_7  7 gkkvlvvGgGevAarkvrklleag.akvtvvapevkeele....elvklaeee 54
                   ++++l+vGgG+ +++ +++l + g   vtv++   ++ +e    ++ k+++ +
     KKY18798.1 14 ERSILIVGGGTFGTSTAYHLSRRGyNSVTVLDRWAAPSSEaagnDINKVIRAD 66
                   5899*******************9778***88775444444444333344444 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 8.1
  NAD_binding_7  32 kvtvvape 39 
                    +v++va  
     KKY18798.1 212 DVVIVAAG 219
                    34444333 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00017      0.25      16      53 ..      13      50 ..      10      71 .. 0.86
   2 ?   -1.9   0.0       1.1   1.6e+03      94     118 ..     159     182 ..     155     203 .. 0.75
   3 ?   -0.4   0.3      0.37   5.5e+02      18      30 ..     211     223 ..     207     234 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00017
                TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS- CS
        Thi4 16 aesDvvivGaGssGLtaayylakkpdlkvailersvsp 53
                +e  ++ivG+G+ G ++ay l+++    v++l+r  +p
  KKY18798.1 13 MERSILIVGGGTFGTSTAYHLSRRGYNSVTVLDRWAAP 50
                7889********************77788999887766 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.1
                 SEHHHHHHHHHHHHHTSTTEEEEES CS
        Thi4  94 kdaalftstllskvlqlanvkllna 118
                 +da  + s+++s++++ a+vk + +
  KKY18798.1 159 ADARTALSRMASATME-AGVKYISG 182
                 5777889999999999.99998865 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.37
                 EEEEEE--SHHHH CS
        Thi4  18 sDvvivGaGssGL 30 
                 +Dvviv aG+s  
  KKY18798.1 211 ADVVIVAAGASAA 223
                 7******999854 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00017      0.26       3      33 ..      17      47 ..      15      85 .. 0.77
   2 ?   -0.6   0.0      0.47     7e+02     216     259 ..     187     223 ..     160     229 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00017
  GMC_oxred_N  3 elveggGsagsvvAaRLsedpstsvlvleag 33
                  l++ggG++g+ +A+ Ls  + +sv+vl+  
   KKY18798.1 17 ILIVGGGTFGTSTAYHLSRRGYNSVTVLDRW 47
                 69*************************9753 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.47
  GMC_oxred_N 216 aekiilegrkkravGVeasdkkgtvkrlvvaakevvvaaGalns 259
                  +++++++ ++  ++G ++ d +         a++v+vaaGa + 
   KKY18798.1 187 VKQLLFD-ETSTCIGAKCADGNAR------FADVVIVAAGASAA 223
                  6666665.5677777777776666......67899999999765 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00023      0.34       1      30 [.      18      47 ..      14      81 .. 0.90
   2 ?   -2.4   0.0       1.5   2.2e+03     125     146 ..     211     231 ..     205     250 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00023
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 +I+G+G  G ++a++l + g +++++l++ 
   KKY18798.1 18 LIVGGGTFGTSTAYHLSRRGYNSVTVLDRW 47
                 699999999999999999999999999985 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.5
  Pyr_redox_3 125 AkkviiAtGefdkPnklnipGe 146
                  A+ vi+A+G  +   +l+++G+
   KKY18798.1 211 ADVVIVAAGA-SAASVLDMKGQ 231
                  5556666666.55555565555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.53
# Mc/sec: 2483.28
//
Query:       KKY18799.1  [L=448]
Description: putative glucanbeta-glucosidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.5e-13   48.2   0.5    1.5e-12   47.6   0.5    1.3  1  Cellulase     Cellulase (glycosyl hydrolase family 5)
  ------ inclusion threshold ------
       0.14   11.6   0.2       0.71    9.3   0.0    2.2  3  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.5   1.6e-16   1.5e-12      14     277 ..     105     403 ..      87     407 .. 0.65

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 1.6e-16
                 CETTSCGGSHHHHHHHHHHHT-SEEEEEEEC..TGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS.......TTTCSSSSTTTTHHHHHH CS
   Cellulase  14 stswgnpyttkalidevkdagfntvRlpvsw..gelvenapdykvdenslerveevvkyakenglyvildiHse.......egwltkadgnssedtaee 103
                 + +w +   t++ ++++++ g+n++R+p+++        + ++ + + +   +e ++ +a   gl+v++d H                 ++++e  + e
  KKY18799.1 105 QKHWATW-FTESDMEAIAAIGMNAIRIPIGYwaF--N--NTGTPFIKGADVFLERAIIWARTYGLKVLIDCHGSpgsqngfT-------SSGHEG-TVE 190
                 4456554.36788999**************5242..2..3333334456667899******************944332220.......222222.222 PP

                 H........HHHHHHHHHHHHT..TTTT.TEEEESSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTTS...SEEEEECHHHHTBHHHHHCTSGS CS
   Cellulase 104 f........fkklwtqiAeryk..knde.vvifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgpn...rliivegnswsgnldgavlndPn 188
                 +          ++++ +A +y   ++++ v ++el+NEP + + g++         k++a + + +++a+ +n   ++i+ +   +++ ++   l+ P+
  KKY18799.1 191 WqagnniqrSLSVLKTMARKYGstGYSDvVFGIELVNEPVS-DYGNN-----FSITKEFARKGYSTVKATASNpelQIIMHDA--FKNPPSY-WLSLPS 280
                 2222222223336778*****64466663668*********.55544.....4899**************9999988888888..8888888.999995 PP

                 S....SSTTEEEEEEEETTTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHTTS.EEEEEEEESS.....TTSSH.............HHHHHHHHH... CS
   Cellulase 189 d....sqdnliysvHfYgpsdfaqtefgkdltdktnlaqrledaakylvekgi.pviigEfGgs.....nadgd.............lakeeaekw... 261
                 d    ++ +  ++ HfY+       +    l+ ++++a   + a   +++k i p+ igEf +      ++d +               ++  +kw   
  KKY18799.1 281 DvsstNSRQFGIDSHFYQIFSSVYLS----LNVQSHIAAACNWASVLAKTKQImPIYIGEFSAVmniciDTDHTsypgtscssagcqCSSTPIDKWnss 375
                 555557899*********33332222....344555555555555556666677*******99766666222223345544444444333444444555 PP

                 ............HHHHHHTTTEEEEEEE CS
   Cellulase 262 ............ldylkekgiswiyWsl 277
                             ld+++ +  +w++W++
  KKY18799.1 376 lvevtrrfveaqLDTFEYNASGWFMWAW 403
                 5555555555556666666666666666 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   7.9e-05      0.71      34     135 ..      72     229 ..      70     246 .. 0.71
   2 ?   -3.0   0.0      0.45     4e+03     156     167 ..     341     352 ..     338     370 .. 0.85
   3 ?   -1.5   0.0      0.16   1.4e+03     148     170 ..     376     398 ..     356     403 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 7.9e-05
                   HHHHHHTTSEEEEEEECCCHSTCTHCHTTCS...HHHHHHHHHHHHHHHHHHTBSEEEEEBCC.................................. CS
  AP_endonuc_2  34 rkaldelglriaslslftrfgypdederear...reesvdalkraielaaaLGapllvlhpGt.................................. 93 
                    k++de++l + ++s   + +  d   ++++     ++  ++++ +e+ aa+G+  + +++G                                   
    KKY18799.1  72 EKWMDETNLFVDAFSDAVDQWTFDSIAGAEEalqKHWATWFTESDMEAIAAIGMNAIRIPIGYwafnntgtpfikgadvfleraiiwartyglkvli 168
                   68999999999999999999998888666667888899999*********************87777777777777777777777777777777777 PP

                   ............GBCTTTSGHH.HHHHHHHHHHHHHHHHHHHHT......SEEEEE--TTT CS
  AP_endonuc_2  94 ............agagpkgsee.eawerlaeslneladyaekeg......vklalEtlags 135
                                ++g++g+ e +a +++ +sl  l  +a+k+g      v +++E  +++
    KKY18799.1 169 dchgspgsqngfTSSGHEGTVEwQAGNNIQRSLSVLKTMARKYGstgysdVVFGIELVNEP 229
                   7777777776664455555555644444444444444444444444477766666666665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.45
                   EEEEEEHHHHHH CS
  AP_endonuc_2 156 vgvclDtgHlli 167
                   + +c+Dt H+ +
    KKY18799.1 341 MNICIDTDHTSY 352
                   789****99865 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.16
                   HHHHTTTTEEEEEEHHHHHHHTT CS
  AP_endonuc_2 148 ldavdspnvgvclDtgHlliaee 170
                   l +v +++v  +lDt+ +++ ++
    KKY18799.1 376 LVEVTRRFVEAQLDTFEYNASGW 398
                   66888999*******99888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 2786.56
//
Query:       KKY18800.1  [L=1222]
Description: putative splicing factor 3b subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-34  118.7   7.8    2.8e-34  118.2   6.4    2.1  1  SF3b1          Splicing factor 3B subunit 1
    2.5e-12   47.0   6.3       0.56   10.6   0.0    8.6 10  HEAT_2         HEAT repeats
    6.8e-12   45.6   0.2      0.011   16.2   0.0    6.9  6  HEAT_EZ        HEAT-like repeat
    8.2e-09   35.0  10.8      0.088   13.1   0.3    8.9  9  HEAT           HEAT repeat
    1.7e-07   31.5   0.6       0.12   12.4   0.0    6.1  7  Cnd1           non-SMC mitotic condensation complex subunit 1
      6e-06   25.1   2.9     0.0019   16.8   0.1    3.2  3  Adaptin_N      Adaptin N terminal region
    9.5e-06   26.1   0.5        1.9    9.1   0.0    5.5  6  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
    9.9e-05   22.3   0.0    0.00032   20.7   0.0    1.8  2  UNC45-central  Myosin-binding striated muscle assembly centra
    0.00021   21.0   0.1        1.1    8.9   0.0    4.2  4  NUC173         NUC173 domain
     0.0019   17.8   0.2       0.91    9.0   0.0    3.6  3  CLASP_N        CLASP N terminal
      0.003   17.5   3.5       0.23   11.4   0.0    5.1  6  DUF3385        Domain of unknown function (DUF3385)
  ------ inclusion threshold ------
      0.035   13.2   0.0        3.8    6.5   0.0    3.4  3  MMS19_C        RNAPII transcription regulator C-terminal
      0.072   11.4   0.4        9.8    4.3   0.0    3.6  4  DRIM           Down-regulated in metastasis


Domain annotation for each model (and alignments):
>> SF3b1  Splicing factor 3B subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   6.4     2e-37   2.8e-34       3     116 ..     243     366 ..     238     368 .. 0.86

  Alignments for each domain:
  == domain 1  score: 118.2 bits;  conditional E-value: 2e-37
       SF3b1   3 akkkrSrWdetpa....tpeatpk...getpvgamgmatP...pgalaamtPeqlqalrlekeidernrpltDeeLdallPkeGYkilepPagYepirt 91 
                 ++kkrSrWd+tp     +p+a++k   +++p+   g+atP   pg  ++m+P q   +++ ++i++rn+pl+DeeLd++lP+eGYkilepP+gY+p+r+
  KKY18800.1 243 ESKKRSRWDQTPGvdgsAPAAAKKsrwDQAPA--LGAATPmaqPGLATPMHPSQSAPTSFGTDISSRNAPLSDEELDMMLPSEGYKILEPPPGYAPVRA 339
                 489**********8877553222235788887..466666555577779************************************************** PP

       SF3b1  92 parkllatptplagta..egfaiqeed 116
                 par+++atp p ++++   gf++qe +
  KKY18800.1 340 PARRIMATPLPEQTSTgvGGFMMQEPE 366
                 ***********99988889*****986 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.6   3.6e+03      12      52 ..     428     477 ..     420     512 .. 0.65
   2 ?    5.6   0.0     0.015        20      34      81 ..     532     583 ..     498     590 .. 0.72
   3 ?    1.2   0.0      0.36   4.9e+02      32      60 ..     607     635 ..     594     660 .. 0.75
   4 ?    3.0   0.0       0.1   1.4e+02       4      52 ..     694     746 ..     691     748 .. 0.81
   5 !    7.3   0.0    0.0045       6.2      24      73 ..     761     815 ..     752     820 .. 0.82
   6 ?    5.0   0.0     0.023        32      20      58 ..     838     879 ..     836     891 .. 0.78
   7 !   10.6   0.0   0.00041      0.56       4      64 ..     899     971 ..     897     977 .. 0.81
   8 ?    4.2   0.0     0.041        56      36      75 ..     983    1026 ..     972    1040 .. 0.72
   9 ?    1.9   0.0      0.22     3e+02      33      85 ..    1050    1111 ..    1024    1114 .. 0.55
  10 ?    2.0   0.0       0.2   2.7e+02      31      54 ..    1089    1112 ..    1050    1140 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.6
      HEAT_2  12 pdpevrraairaLgrignp........ealpaLve.llededpavRraaa 52 
                   p  r++a+r++ + + +        ++lp+L e  led++++    ++
  KKY18800.1 428 GTPPMRKTALRQITDNARQfgagalfnQILPLLMEkSLEDQERHLLVKVI 477
                 55677888888888444444444555566777777566777666555555 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.015
      HEAT_2  34 paLvellededpavRraaaeaLg....aigdpealpaLkellddddddvvRe 81 
                  ++++ +++ d++vR + a+a +    a+g p+ lp+L++ +++++++  R 
  KKY18800.1 532 STMRPDIDHIDEYVRNTTARAFAvvasALGIPALLPFLRAVCRSKKSWQARH 583
                 4444445566899999999988644447777*9*********9999988775 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.36
      HEAT_2  32 alpaLvellededpavRraaaeaLgaigd 60 
                 +++++ + l+de + vR     a++a+++
  KKY18800.1 607 LVDCIADNLSDEQAKVRTVTSLAIAALAE 635
                 68899999999999988766666666543 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.1
      HEAT_2   4 LlqalendpdpevrraairaLgrignpea..lpaLve.lled..edpavRraaa 52 
                 Ll    ++pd+e ++ +++++ +++++e    ++L e +l+d  ++ +vRr+a 
  KKY18800.1 694 LLREF-SSPDEEMKKVVLKVISQCASTEGvtAAYLKEnVLQDffKSFWVRRMAL 746
                 66667.79******************9775577788745698888999999986 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.0045
      HEAT_2  24 Lg.rignpealpaLvellededpavRraaaeaLgai....gdpealpaLkelldd 73 
                 Lg + g  e+++ +v+ l+de++a R++ +e++ ++    g  +  + L+e+l d
  KKY18800.1 761 LGqKVGVGEIVERIVNNLKDESEAYRKMTVETIEKViaslGAADIGERLEERLID 815
                 5633577799*********************997654444888888889888876 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.023
      HEAT_2  20 airaLgrignp...ealpaLvellededpavRraaaeaLgai 58 
                 ++ aLg+   p   +++ +++  l+++++ vR++aa+ +++i
  KKY18800.1 838 VVNALGTRCKPylpQIVSTILWRLNNKSATVRQQAADLISRI 879
                 678899544433449999999999999999999999988877 PP

  == domain 7  score: 10.6 bits;  conditional E-value: 0.00041
      HEAT_2   4 LlqalendpdpevrraairaLg.........rignp..ealpaLvellededpavRraaaeaLgaigd..peal 64 
                 L ++l   + pev   ++ aL          ++++p  ++lp L+++l++ ++ v+++ ++  g+i+d  pe++
  KKY18800.1 899 LYEYL-GEEYPEVLGSILGALRsivtvvginQMQPPikDLLPRLTPILRNRHEKVQENTIDLVGRIADrgPESV 971
                 66777.77777777777777777777777887887788****************************87556665 PP

  == domain 8  score: 4.2 bits;  conditional E-value: 0.041
      HEAT_2   36 LvellededpavRraaaeaLg....aigdpealpaLkelldddd 75  
                  L+++l+ ++  +Rraa ++ g    aig +++l+ L+  l+  +
  KKY18800.1  983 LLDMLKAHKKGIRRAANNTFGfiakAIGPQDVLATLLNNLRVQE 1026
                  66777899999999999999944445578999999988776544 PP

  == domain 9  score: 1.9 bits;  conditional E-value: 0.22
      HEAT_2   33 lpaLvellededpavRraaaeaLgai....gd..pe....alpaLkellddddddvvReaAae 85  
                  lpaL +  + ++ +v+  + ++L+ +    g+  ++      p+L+++l  d+d+v R+ Aa+
  KKY18800.1 1050 LPALMNEYRVPELNVQNGVLKSLSFLfeyiGEmaKDyvyaITPLLEDALI-DRDQVHRQTAAS 1111
                  55555555556666666666666533333332111122213466666665.466776776665 PP

  == domain 10  score: 2.0 bits;  conditional E-value: 0.2
      HEAT_2   31 ealpaLvellededpavRraaaea 54  
                   + p+L ++l d d   R++aa  
  KKY18800.1 1089 AITPLLEDALIDRDQVHRQTAASV 1112
                  456777777777777777777753 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.3   1.8e+03       3      39 ..     545     575 ..     543     586 .. 0.63
   2 ?    2.0   0.1      0.23   3.2e+02      22      48 ..     600     626 ..     597     633 .. 0.82
   3 ?    0.7   0.0       0.6   8.2e+02      28      54 ..     769     795 ..     761     796 .. 0.90
   4 !   16.2   0.0     8e-06     0.011       8      55 .]     832     879 ..     830     879 .. 0.94
   5 !   13.3   0.0   6.4e-05     0.088      13      55 .]     920     963 ..     910     963 .. 0.84
   6 ?    2.4   0.0      0.17   2.4e+02      17      49 ..    1082    1110 ..    1063    1112 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.3
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLlalLnd 39 
                 vR+  a+a++ +a       ++ +p++lp+L a  ++
  KKY18800.1 545 VRNTTARAFAVVA------SALGIPALLPFLRAVCRS 575
                 6677777775333......333467888888765555 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.23
     HEAT_EZ  22 lqplvpeilpaLlalLnddsdeVRaaA 48 
                 + p+++ ++++ +  L+d++++VR+ +
  KKY18800.1 600 ILPHLKGLVDCIADNLSDEQAKVRTVT 626
                 668999******************855 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.6
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaAagaLgn 54 
                 ei+   ++ L+d+s + R+ ++ ++++
  KKY18800.1 769 EIVERIVNNLKDESEAYRKMTVETIEK 795
                 89999****************999986 PP

  == domain 4  score: 16.2 bits;  conditional E-value: 8e-06
     HEAT_EZ   8 awaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 ++++G++ +  +  ++p++p+i+   l +Ln++s++VR++Aa  ++++
  KKY18800.1 832 LNGFGTVVNALGTRCKPYLPQIVSTILWRLNNKSATVRQQAADLISRI 879
                 57899999999999*******************************997 PP

  == domain 5  score: 13.3 bits;  conditional E-value: 6.4e-05
     HEAT_EZ  13 r.laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 + + +++ +++qp ++++lp L + L++ + +V+++++   g++
  KKY18800.1 920 SiVTVVGINQMQPPIKDLLPRLTPILRNRHEKVQENTIDLVGRI 963
                 2555678899***************************9988886 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.17
     HEAT_EZ   17 gepellqplvpeilpaLlalLnddsdeV.RaaAa 49  
                  ++++++    p + +aL+     d d V R++Aa
  KKY18800.1 1082 MAKDYVYAITPLLEDALI-----DRDQVhRQTAA 1110
                  444445544555555555.....9*****99998 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       2.3   3.1e+03      14      29 ..     543     558 ..     542     560 .. 0.85
   2 ?   -1.6   0.0       3.3   4.6e+03       1      26 [.     565     591 ..     565     592 .. 0.77
   3 !   13.1   0.3   6.4e-05     0.088       1      29 [.     607     635 ..     607     637 .. 0.94
   4 ?   -0.1   0.0       1.2   1.6e+03       1      29 [.     690     718 ..     690     719 .. 0.90
   5 ?    5.6   0.0     0.016        22       1      26 [.     770     795 ..     770     800 .. 0.87
   6 !    6.4   0.1    0.0089        12       6      28 ..     859     880 ..     853     883 .. 0.86
   7 ?    2.2   0.0      0.21   2.8e+02       1      29 [.     937     965 ..     937     966 .. 0.94
   8 ?   -1.1   0.0       2.4   3.3e+03       5      29 ..     983    1007 ..     982    1009 .. 0.84
   9 ?    3.8   0.0     0.062        86       2      28 ..    1091    1117 ..    1090    1120 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHHHHHH CS
        HEAT  14 peVReaAakaLgalae 29 
                   VR ++a+a++ +a+
  KKY18800.1 543 EYVRNTTARAFAVVAS 558
                 67*********99887 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.3
                 HHHHHHHHHT-.SSHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsD.pspeVReaAakaLga 26 
                 llP+l   +++ +s++ R + +k + +
  KKY18800.1 565 LLPFLRAVCRSkKSWQARHTGVKIVQQ 591
                 799999999665999999887776655 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 6.4e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 l++++  +lsD+ ++VR  + +a++alae
  KKY18800.1 607 LVDCIADNLSDEQAKVRTVTSLAIAALAE 635
                 68899**********************98 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 1.2
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 ++ +ll+  s+p+ e  + ++k + + a+
  KKY18800.1 690 IMEILLREFSSPDEEMKKVVLKVISQCAS 718
                 789999999*************9999876 PP

  == domain 5  score: 5.6 bits;  conditional E-value: 0.016
                 HHHHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLga 26 
                 ++  ++++l+D+s   R+++++++ +
  KKY18800.1 770 IVERIVNNLKDESEAYRKMTVETIEK 795
                 67889*****************9876 PP

  == domain 6  score: 6.4 bits;  conditional E-value: 0.0089
                 HHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLgala 28 
                 ++ l+ +s+ VR+ Aa  + ++a
  KKY18800.1 859 WR-LNNKSATVRQQAADLISRIA 880
                 55.79**************9998 PP

  == domain 7  score: 2.2 bits;  conditional E-value: 0.21
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 llP l   l+  + +V e+++  +g++a 
  KKY18800.1 937 LLPRLTPILRNRHEKVQENTIDLVGRIAD 965
                 7999**********************985 PP

  == domain 8  score: -1.1 bits;  conditional E-value: 2.4
                  HHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    5 llkllsDpspeVReaAakaLgalae 29  
                  ll +l+     +R+aA +++g +a+
  KKY18800.1  983 LLDMLKAHKKGIRRAANNTFGFIAK 1007
                  677888888889********99987 PP

  == domain 9  score: 3.8 bits;  conditional E-value: 0.062
                  HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    2 lPlllkllsDpspeVReaAakaLgala 28  
                   Pll  +l D +   R++Aa  + ++a
  KKY18800.1 1091 TPLLEDALIDRDQVHRQTAASVVKHVA 1117
                  599*****************9887665 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       6.2   8.6e+03     116     145 ..     453     480 ..     450     486 .. 0.81
   2 ?   -1.4   0.0       1.5   2.1e+03      22      46 ..     530     554 ..     527     566 .. 0.80
   3 !   12.4   0.0   8.8e-05      0.12      35     147 ..     579     718 ..     544     735 .. 0.75
   4 ?    2.0   0.0      0.14   1.9e+02      21      50 ..     769     798 ..     765     829 .. 0.86
   5 ?    3.3   0.1     0.056        77      21      85 ..     852     921 ..     836     960 .. 0.69
   6 ?    3.0   0.0     0.067        93      19      92 ..     934    1013 ..     917    1039 .. 0.61
   7 ?    2.6   0.0     0.088   1.2e+02      19      48 ..    1087    1116 ..    1082    1161 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6.2
        Cnd1 116 qitilefLlsyipkdkqeaeslveklcprl 145
                 +++il +L++   +d++   +l+ k+++r+
  KKY18800.1 453 FNQILPLLMEKSLEDQE--RHLLVKVIDRV 480
                 56788889988888888..89999999886 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.5
        Cnd1  22 lvepLrkrLkDedpyVRktaaivva 46 
                 +++ +r  +   d+yVR+t+a ++a
  KKY18800.1 530 MISTMRPDIDHIDEYVRNTTARAFA 554
                 6677777778889******997766 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 8.8e-05
        Cnd1  35 pyVRktaaivvakL.ilnd...mvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsd....................... 106
                  + R t + +v ++ il++   +   kg+++ +a+ l+De+++V++ + +a+  ++e ++   ++++ di++ l +                       
  KKY18800.1 579 WQARHTGVKIVQQIpILMGcaiLPHLKGLVDCIADNLSDEQAKVRTVTSLAIAALAEAANPYGIESFDDILNPLWTgarkqrgkglagflkavgyiipl 677
                 4567778888888887777332334799******************************988999**********9987777777777777777666666 PP

        Cnd1 107 alnecsewgqitilefLlsyipkdkqeaeslveklcprlqh 147
                   +e  +    +i+e+Ll+  ++ ++e++++v k++++   
  KKY18800.1 678 MDEEYANYYTSQIMEILLREFSSPDEEMKKVVLKVISQCAS 718
                 55568888888899999988888888899999999887654 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.14
        Cnd1  21 ylvepLrkrLkDedpyVRktaaivvakLil 50 
                 ++ve++ + LkDe++  Rk ++ ++ k+i 
  KKY18800.1 769 EIVERIVNNLKDESEAYRKMTVETIEKVIA 798
                 678899999999999999999999988865 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.056
        Cnd1  21 ylvepLrkrLkDedpyVRktaaivvakL.ilndmvkekgflselakll....eDenprVvanalaaltei 85 
                 ++v+ +  rL+ ++++VR++aa +++++ + ++ + e  ++ +l   l     +e p+V  + l al  i
  KKY18800.1 852 QIVSTILWRLNNKSATVRQQAADLISRIaMVMKQCGEDALMGKLGVVLyeylGEEYPEVLGSILGALRSI 921
                 5667777799999************999988888888887777644331111556666666666666555 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.067
        Cnd1   19 veylvepLrkrLkDedpyVRktaaivvakL..ilnd...mvkekgflselaklleDenprVvanalaalteisek.sena 92  
                  +  l+++L+  L+ +++ V+++++ +v ++    ++     ++  + +el+++l+ +++ ++  a + +  i++  +++ 
  KKY18800.1  934 IKDLLPRLTPILRNRHEKVQENTIDLVGRIadRGPEsvnAREWMRICFELLDMLKAHKKGIRRAANNTFGFIAKAiGPQD 1013
                  55566666777777777777777777777744233311133444477777777777777777777777777776654444 PP

  == domain 7  score: 2.6 bits;  conditional E-value: 0.088
        Cnd1   19 veylvepLrkrLkDedpyVRktaaivvakL 48  
                  v ++++ L+ +L D+d+  R+taa vv ++
  KKY18800.1 1087 VYAITPLLEDALIDRDQVHRQTAASVVKHV 1116
                  667888899******************998 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.095   1.3e+02      80     179 ..     530     636 ..     523     654 .. 0.75
   2 !   16.8   0.1   1.4e-06    0.0019     264     371 ..     686     800 ..     667     825 .. 0.84
   3 !    5.5   0.0    0.0038       5.3     229     388 ..     931    1096 ..     846    1118 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.095
                 CCHHHHHHCCSSSHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHT-SSH.HHHHHHHHHHHHCCCC.....CHHCCCCC.HHHHHHHCTT-SS...HHH CS
   Adaptin_N  80 vtnslqkDlkdpnqlirglALrvLssirvpelaedlapaikkllkdrsp.yvrkkAalailklykk.....dpdllrkq.lveeikellsdkd...pgv 168
                 ++++++ D  + ++++r+ + r+ + + ++   ++l+p ++++ +++++ + r + + ++ ++  +      p+l   + lv++i + lsd++     v
  KKY18800.1 530 MISTMRPDIDHIDEYVRNTTARAFAVVASALGIPALLPFLRAVCRSKKSwQARHTGVKIVQQIPILmgcaiLPHL---KgLVDCIADNLSDEQakvRTV 625
                 6899999999***************99999999999999999999999976666666555555332433434555...248999999999999333355 PP

                 HHHHHHHHHHH CS
   Adaptin_N 169 vlaAvalleei 179
                 ++ A+a+l e 
  KKY18800.1 626 TSLAIAALAEA 636
                 66666666665 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.4e-06
                 HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHX.......XTTTTTTTCCCCSXX.TTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXH CS
   Adaptin_N 264 livlavnaLvrllsskdenlryvaLrtllkivkke.......pkavqhldlkifllk.tdddvsirlkaldlllklvdesNvkeivkeLkkyvkevade 354
                   ++++++L r  ss+de ++ v+L+ +++ +++e       ++ v ++ +k+f ++ +  d    +  +++ ++l+++  v eiv+ + + +k+ ++ 
  KKY18800.1 686 YTSQIMEILLREFSSPDEEMKKVVLKVISQCASTEgvtaaylKENVLQDFFKSFWVRrMALDKRNYRQVVETTVDLGQKVGVGEIVERIVNNLKDESEA 784
                 5689999***************************99999999999999*******973577999999**************************888666 PP

                 HHHHHHHHHHHHHHHHS CS
   Adaptin_N 355 dfksklvkaIgrlaekf 371
                  +++++v++I +++ + 
  KKY18800.1 785 -YRKMTVETIEKVIASL 800
                 .*********9988766 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0038
                  ....HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST......HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHX.XTTTTTTTCCCCSXXTT CS
   Adaptin_N  229 k...kellesllnllqssnnaVlletvnlivelapkne......livlavnaLvrllsskdenlryvaLrtllkivkke.pkavqhldlkifllktd 315 
                  +   k+ll++l++ l+++++ V  +t+ l+ ++a++ +        ++++  L ++l+ +++++r +a +t+  i+k   p+ v    l+  +++  
  KKY18800.1  931 QppiKDLLPRLTPILRNRHEKVQENTIDLVGRIADRGPesvnarEWMRICFELLDMLKAHKKGIRRAANNTFGFIAKAIgPQDVLATLLNNLRVQER 1027
                  1223689999999999999999999999999888877777887877899999999999999999999999999999987788888888888888855 PP

                  SXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTT CS
   Adaptin_N  316 ddvsirlkaldlllklvdesNvkeivkeLkkyvkevadedfksklvkaIgrlaekfatdaewvldvllellsl 388 
                  +++     a+ ++ +++       ++  L+++   v++  +   ++k+++ l e + ++a++++  +  ll++
  KKY18800.1 1028 QSRVCTAVAIGIVAETCAPFT---VLPALMNEY-RVPELNVQNGVLKSLSFLFEYIGEMAKDYVYAITPLLED 1096
                  555555566666666665543...456666665.555556666666666666666666666666666666665 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.67   9.2e+02      17      59 ..     484     526 ..     474     538 .. 0.86
   2 ?    6.1   0.0     0.012        17       2      73 ..     581     652 ..     580     657 .. 0.88
   3 ?    0.2   0.0      0.88   1.2e+03      17      43 ..     677     705 ..     658     720 .. 0.77
   4 ?    1.1   0.0      0.45   6.2e+02      17      51 ..     761     793 ..     753     803 .. 0.77
   5 !    9.1   0.0    0.0014       1.9       8      60 ..     833     885 ..     830     897 .. 0.89
   6 ?   -2.3   0.0       5.1     7e+03       4      48 ..    1066    1110 ..    1063    1137 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.67
  Vac14_Fab1_bd  17 lekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvak 59 
                    l+  +++y+++i+ ++   + D+d   R    E + n++k+a 
     KKY18800.1 484 LDDLVRPYTHKILVVIEPLLIDQDYYARVEGREIISNLSKAAG 526
                    566689999*******************9999*9999999875 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.012
  Vac14_Fab1_bd   2 arkggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdal 73 
                    ar+ g+  +  + i ++ +i ++l+ +v+ + + +sD++++vR  ++ ++  +a +a+   ++ + +i++ l
     KKY18800.1 581 ARHTGVKIVQQIPILMGCAILPHLKGLVDCIADNLSDEQAKVRTVTSLAIAALAEAANPYGIESFDDILNPL 652
                    677888888889999999999**********************99999999999999999999999998766 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.88
  Vac14_Fab1_bd  17 lekk..ikeyleeivkpvlkcfsDkdsrv 43 
                    l  +  ++ y+++i++++l+ fs  d+++
     KKY18800.1 677 LMDEeyANYYTSQIMEILLREFSSPDEEM 705
                    44444588999999999999999988865 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.45
  Vac14_Fab1_bd  17 lekkikeyleeivkpvlkcfsDkdsrvRyyacEsl 51 
                    l++k+   + eiv+ +++ ++D+++  R  ++E++
     KKY18800.1 761 LGQKV--GVGEIVERIVNNLKDESEAYRKMTVETI 793
                    55444..3679**************9999988876 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.0014
  Vac14_Fab1_bd   8 igLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakg 60 
                     g+ +v  al+++ k+yl +iv+++l  ++ k++ vR  a++ +  ia v+k+
     KKY18800.1 833 NGFGTVVNALGTRCKPYLPQIVSTILWRLNNKSATVRQQAADLISRIAMVMKQ 885
                    577788889********************************999998887775 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 5.1
  Vac14_Fab1_bd    4 kggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyac 48  
                     +g l +L ++   +++ +k+y+  i + + +++ D+d+  R +a+
     KKY18800.1 1066 NGVLKSLSFLFEYIGEMAKDYVYAITPLLEDALIDRDQVHRQTAA 1110
                     566666666666777778888888888888888888887776665 PP

>> UNC45-central  Myosin-binding striated muscle assembly central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.4e-07   0.00032       3     120 ..     608     725 ..     600     734 .. 0.91
   2 ?   -4.0   0.0       9.2   1.3e+04       4      29 ..     855     879 ..     852     890 .. 0.55

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.4e-07
                    HHHHHHHC-T---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...SCCTHHHHHHHHHHHHHHHHSSHHHHHHHHTSTTHHHHHHHHHHS. CS
  UNC45-central   3 ldlllkfldmrqpesvrslallilsklldaakeefeeaiseflesll...ekgdeddllnalsvltalFpvvpdvasalflsegflesllelvesk 95 
                    +d + ++l  +++++vr+  +l++++l +aa+  ++e ++++l+ l    +k++++ l  +l+++  + p++ +  ++ ++s +++e+ll   +s 
     KKY18800.1 608 VDCIADNLS-DEQAKVRTVTSLAIAALAEAANPYGIESFDDILNPLWtgaRKQRGKGLAGFLKAVGYIIPLMDEEYANYYTS-QIMEILLREFSS- 700
                    566777777.699**********************************99999**************************9999.9**********9. PP

                    S-HHHHHHHHHHHHTT--SSSSSHH CS
  UNC45-central  96 kskkvqlaalellsaAcidkkcrka 120
                     ++++++++l+++s+ ++ + + +a
     KKY18800.1 701 PDEEMKKVVLKVISQCASTEGVTAA 725
                    ***************9888766555 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 9.2
                    HHHHHHC-T---TTHHHHHHHHHHHH CS
  UNC45-central   4 dlllkfldmrqpesvrslallilskl 29 
                    +++l  l+ +++++vr++a  ++s++
     KKY18800.1 855 STILWRLN-NKSATVRQQAADLISRI 879
                    45555555.36666666665555554 PP

>> NUC173  NUC173 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       0.3   4.2e+02      40      76 ..     767     803 ..     730     809 .. 0.81
   2 !    5.6   0.0    0.0079        11      22      79 ..     832     892 ..     816     906 .. 0.79
   3 !    8.9   0.0   0.00081       1.1      10      89 ..     945    1025 ..     899    1032 .. 0.76
   4 ?   -2.4   0.0       2.3   3.2e+03      19      63 ..    1066    1110 ..    1062    1145 .. 0.53

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.3
      NUC173  40 lkkilktlgelreseefelkkeadevigaairamGpe 76 
                 + +i++++ +  ++e+ +++k   e+i + i+++G+ 
  KKY18800.1 767 VGEIVERIVNNLKDESEAYRKMTVETIEKVIASLGAA 803
                 778899888888888779****************986 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0079
      NUC173  22 levlsalfeklgkrsspllkkilktlgelreseefelkkeadevig...aairamGpevvL 79 
                 l+ + +++++lg r++p+l +i+ t+    ++++++ +++a + i+   + ++ +G ++++
  KKY18800.1 832 LNGFGTVVNALGTRCKPYLPQIVSTILWRLNNKSATVRQQAADLISriaMVMKQCGEDALM 892
                 66778999*****************998777778888888887765111556677766665 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00081
      NUC173   10 Lslkyqaawkevlevlsalfeklgkrs.spllkkilktlgelreseefelkkeadevigaairamGpevvLevlPLnleee 89  
                  L+ +++++ ++++ ++ ++ ++  +++ +   ++i  +l ++ +++++  +++a++++g++ +a+Gp+ vL++l  nl  +
  KKY18800.1  945 LRNRHEKVQENTIDLVGRIADRGPESVnAREWMRICFELLDMLKAHKKGIRRAANNTFGFIAKAIGPQDVLATLLNNLRVQ 1025
                  555666666666666666666665555322344444444455555555799*********************998777744 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 2.3
      NUC173   19 kevlevlsalfeklgkrsspllkkilktlgelreseefelkkead 63  
                  + vl+ ls lfe +g+ ++ ++  i   l +   ++++ +++ a 
  KKY18800.1 1066 NGVLKSLSFLFEYIGEMAKDYVYAITPLLEDALIDRDQVHRQTAA 1110
                  567777777777777777544333333333333333222222222 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.036        49     142     196 ..     577     626 ..     527     643 .. 0.57
   2 ?   -0.1   0.0      0.42   5.8e+02      84     121 ..     842     879 ..     835     893 .. 0.65
   3 !    9.0   0.0   0.00066      0.91      71     151 ..     954    1034 ..     933    1045 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.036
     CLASP_N 142 KnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVReta 196
                 K+ q+R + ++ ++++ + ++    ++  +l  + +++++   l+D + +VR ++
  KKY18800.1 577 KSWQARHTGVKIVQQIPILMG---CAILPHL--KGLVDCIADNLSDEQAKVRTVT 626
                 555566666665555555555...3333333..4456666666666666666554 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.42
     CLASP_N  84 lkeqldpmveillptLlkllgdtKkiisqnanqalaal 121
                 l+++ +p++ ++++t+l +l ++   ++q+a+  ++ +
  KKY18800.1 842 LGTRCKPYLPQIVSTILWRLNNKSATVRQQAADLISRI 879
                 55556666666666666666666666666666555544 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00066
     CLASP_N   71 stgchllkelaiqlkeqldpm.veillptLlkllgdtKkiisqnanqalaallsnasfsprilqvlsvalqdKnvqpReysa 151 
                   + + l+ ++a    e++ +    +++  Ll++l ++Kk i+ +an+++  + ++++  +++l  l + l     q R + a
  KKY18800.1  954 ENTIDLVGRIADRGPESVNAReWMRICFELLDMLKAHKKGIRRAANNTFGFIAKAIG-PQDVLATLLNNLRVQERQSRVCTA 1034
                  56667777777777777666667788889**************************99.777766666555555666666655 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.2   1.6e+03      73     130 ..     438     496 ..     405     502 .. 0.75
   2 ?   -0.7   0.0      0.88   1.2e+03       2      34 ..     556     588 ..     555     636 .. 0.88
   3 ?    0.4   0.0      0.39   5.4e+02      78     133 ..     677     735 ..     655     756 .. 0.56
   4 !   11.4   0.0   0.00017      0.23      40     149 ..     745     872 ..     745     884 .. 0.59
   5 ?   -1.3   0.0       1.3   1.7e+03     109     150 ..     916     957 ..     905     964 .. 0.67
   6 ?   -1.2   0.0       1.2   1.7e+03      78     133 ..    1040    1094 ..     983    1112 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.2
     DUF3385  73 vglspsneeyyptvvinaLlrilkdpsls.shhaavveaimnifktlglkcvpfLdqii 130
                  +++    ++ +   +n++l +l ++sl+ + ++  v++i  ++ +l+  + p+ ++i+
  KKY18800.1 438 RQITDNARQFGAGALFNQILPLLMEKSLEdQERHLLVKVIDRVLYKLDDLVRPYTHKIL 496
                 44455556666777889999999999999677778889998888888888888877776 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.88
     DUF3385   2 vdPyleypqLLelLlnilkteqsqsirrevikl 34 
                 v   l  p LL  L  + ++++s++ r   +k+
  KKY18800.1 556 VASALGIPALLPFLRAVCRSKKSWQARHTGVKI 588
                 566677899999999999999999999888776 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.39
     DUF3385  78 sneeyyptvvinaLlril..kdpslsshhaavv.eaimnifktlglkcvpfLdqiipal 133
                   +e y+ +  +++++il  + +s ++  ++vv ++i +  +t g+    + +++++++
  KKY18800.1 677 LMDEEYANYYTSQIMEILlrEFSSPDEEMKKVVlKVISQCASTEGVTAAYLKENVLQDF 735
                 44555666666666666633112222334444403334444433333333334555555 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 0.00017
     DUF3385  40 ALDPykhkqveeraedkkrreeaaretdlsllmvglspsneeyyptvvinaLlril................kdpslsshhaavveai......mnifk 116
                 ALD  +++qv e++ d  +++      ++ + +v+  + + e y +++++++ +++                 d  l   +++ ve i       ++++
  KKY18800.1 745 ALDKRNYRQVVETTVDLGQKVG---VGEIVERIVNNLKDESEAYRKMTVETIEKVIaslgaadigerleerlIDGILFAFQEQSVEDIimlngfGTVVN 840
                 5666666666655444322211...12222223333355555666655555555555556666666666666555666666666666656556578999 PP

     DUF3385 117 tlglkcvpfLdqiipallsvirtteesnlrefl 149
                  lg++c p+L+qi++++l  +++ ++ ++r+  
  KKY18800.1 841 ALGTRCKPYLPQIVSTILWRLNNKSA-TVRQQA 872
                 9*****************99998776.555444 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 1.3
     DUF3385 109 eaimnifktlglkc.vpfLdqiipallsvirtteesnlrefll 150
                  a+ +i++ +g+++  p ++ ++p+l  ++r+ +e +++e  +
  KKY18800.1 916 GALRSIVTVVGINQmQPPIKDLLPRLTPILRNRHE-KVQENTI 957
                 55666777777776566777777777777777766.6666555 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 1.2
     DUF3385   78 sneeyyptvvinaLlrilkdpslsshhaavveaimnifktlglkcvpfLdqiipal 133 
                    e   p +v+ aL++  + p l+  +++v++++ + f+ +g     ++  i p l
  KKY18800.1 1040 VAETCAPFTVLPALMNEYRVPELN-VQNGVLKSLSFLFEYIGEMAKDYVYAITPLL 1094
                  445556667777888888888877.6777888888888887777777777776655 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0028       3.8     330     403 ..     645     718 ..     644     737 .. 0.89
   2 ?    1.3   0.0       0.1   1.4e+02      19      75 ..     835     886 ..     818     965 .. 0.64
   3 ?   -2.5   0.0       1.5     2e+03     332     383 ..    1048    1098 ..    1048    1117 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0028
     MMS19_C 330 FstvlpklvegfkssdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevkastLetlksile 403
                 F+++l+ l +g++++  +  + +L A   ++  + +++   + ++++ +Ll+  + pd+e+k+ +L++++  + 
  KKY18800.1 645 FDDILNPLWTGARKQRGKGLAGFLKAVGYIIPLMDEEYANYYTSQIMEILLREFSSPDEEMKKVVLKVISQCAS 718
                 8889999999999999999999***********************************************98776 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.1
     MMS19_C  19 yervLeaLaelss..ekqlfetlvirllnkldlvlksnessaayahailstllkllekk 75 
                 + +v +aL++ ++   +q++ t++ rl nk  +v +++++       ++s ++ +++++
  KKY18800.1 835 FGTVVNALGTRCKpyLPQIVSTILWRLNNKSATVRQQAAD-------LISRIAMVMKQC 886
                 6677777777777666788888888888888887777776.......444444444443 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.5
     MMS19_C  332 tvlpklvegfkssdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaL 383 
                  tvlp l+++++  + + ++ +L +Ls l + +  +    +   + PlL +aL
  KKY18800.1 1048 TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIG-EMAKDYVYAITPLLEDAL 1098
                  689999999999999999999999999988774.455666666666666666 PP

>> DRIM  Down-regulated in metastasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       0.8   1.1e+03      89     108 ..     463     482 ..     438     517 .. 0.69
   2 ?    4.2   0.0    0.0076        11     194     235 ..     831     872 ..     674     890 .. 0.84
   3 ?    4.3   0.0    0.0071       9.8     194     237 ..     831     874 ..     827     921 .. 0.79
   4 ?    1.7   0.0     0.044        61     376     442 ..     928     993 ..     906    1117 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.8
        DRIM  89 esieeehraelmpvllRiLy 108
                 +s+e+++r+ l+ v+ R+Ly
  KKY18800.1 463 KSLEDQERHLLVKVIDRVLY 482
                 44555555555555555555 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0076
        DRIM 194 flnlledvlkelgsklapflpkllklllyclaaaqrrlksss 235
                 +ln   +v++ lg++ +p+lp++++++l  l++ ++ +++++
  KKY18800.1 831 MLNGFGTVVNALGTRCKPYLPQIVSTILWRLNNKSATVRQQA 872
                 577778899999999999999999999988877776655554 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.0071
        DRIM 194 flnlledvlkelgsklapflpkllklllyclaaaqrrlksssee 237
                 +ln   +v++ lg++ +p+lp++++++l  l++ ++ +++++++
  KKY18800.1 831 MLNGFGTVVNALGTRCKPYLPQIVSTILWRLNNKSATVRQQAAD 874
                 6788899*********************9999988777776554 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.044
        DRIM 376 elLlphvsslLeylsalleksaaskkdkskellereleiLsrlaplvedseqassLldlllplLrk......p 442
                 + ++p +++lL +l+ +l++         +++ e  ++++ r+a+   +s +a++ +++++ lL+        
  KKY18800.1 928 NQMQPPIKDLLPRLTPILRNR-------HEKVQENTIDLVGRIADRGPESVNAREWMRICFELLDMlkahkkG 993
                 557888888888888888766.......246888888888888888888888888888877777653333330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.52
# Mc/sec: 7110.18
//
Query:       KKY18801.1  [L=489]
Description: putative ribonuclease p complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.5e-59  198.6   0.0    1.4e-58  197.9   0.0    1.3  1  RNase_P_p30  RNase P subunit p30
  ------ inclusion threshold ------
       0.16   10.8   3.2      0.043   12.6   0.3    1.4  2  DctM         Tripartite ATP-independent periplasmic transport


Domain annotation for each model (and alignments):
>> RNase_P_p30  RNase P subunit p30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.9   0.0   1.5e-62   1.4e-58       1     214 [.       3     214 ..       3     215 .. 0.95

  Alignments for each domain:
  == domain 1  score: 197.9 bits;  conditional E-value: 1.5e-62
                  EEEEE-SH.........HHHHHHHHH-SEEEEEEEEEESS---HHHHH.......HHHHHHHH...HHSSEEEEEEES-H.HHHHHHHHH--EEEEE- CS
  RNase_P_p30   1 ydlnipwpsddskkksrtiktlaelgytgvainftveaekekkpnasepikeelkelkkelsg.lkllsRvtlvvsdpsklqrlskvrqkfdllavrP 97 
                  ydln+p + + s+ ++ t+  +aelgy++ a+++t++   +k p++   +++ l  ++  +++ + l sR t ++sd+s+  r+s +++++dlla+rP
   KKY18801.1   3 YDLNVPFNANASQLQA-TLDFAAELGYNTLALSHTLS---GKLPTTIPATPIPLPPPDVVVPRgMSLISRATFTISDASQNHRVSGLQSSYDLLALRP 96 
                  8**********99988.********************...999998885556666666666656***************99***************** PP

                  -SHHHHHHHHHT.T-SEEE-TTTTSSS-S--HHHHHHHHHHT-EEEEESHHHHHS-H.HHHHHHHHHHHHHHHHHHH--EEEE--BSSGGG---HHHH CS
  RNase_P_p30  98 ttekalraacenldvDiisidltsrlpfglkhktiraAvergvafEinyspllrdsg.laRrnfisnarkllrltrgkgvviSSgAesplelRnpydi 194
                  ttekal ++c +ld+Diis+d++ rlpf+lk+k ++aA++rg++fEi+ys  + + g  aRrn+is a +l+r++rg+g++i+S+A+++++lR+p d+
   KKY18801.1  97 TTEKALSLCCHSLDCDIISLDFSVRLPFILKFKALSAALQRGIRFEICYSAGITGGGtDARRNLISGATALIRASRGRGIIITSEAKDAIGLRGPWDV 194
                  ******************************************************999899************************************** PP

                  HHHHHHHT--HHHHHHTTTH CS
  RNase_P_p30 195 inLlktlGLeedrakeavse 214
                  +nL +++GL +++ ke v e
   KKY18801.1 195 VNLCAVWGLGQEKGKEGVCE 214
                  ***************99865 PP

>> DctM  Tripartite ATP-independent periplasmic transporter, DctM component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   4.8e-06     0.043     195     279 ..     227     327 ..     216     331 .. 0.77
   2 ?   -4.1   0.2      0.57   5.1e+03     275     284 ..     348     357 ..     334     387 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.8e-06
        DctM 195 kenlrs.............ktkaelkrlgqalkeaipalll..pliilig.illgiftpteagavavvyalviallvyrrltleevaaallstakttaa 277
                 +  +r+             ++k+e+k + +++k+++  +l+  ++ il+  ++  + tp e++ v+++ ++ ++++v+   +l++v ++l s+a  ta+
  KKY18801.1 227 RSTFRGvvgiisgessealEDKFESKTVVNSMKRKVSCTLCkaVVSILGCpFTEAAVTPLEVAEVSATEVIELEIVVEDAAELATVVEGLRSAAADTAV 325
                 555555666666666666688999999999999999555541144555541556669*************************************99999 PP

        DctM 278 vl 279
                 v+
  KKY18801.1 326 VI 327
                 86 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 0.57
        DctM 275 taavlfilaa 284
                  a+v+++ aa
  KKY18801.1 348 VAVVAAAAAA 357
                 2222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 3001.64
//
Query:       KKY18802.1  [L=1372]
Description: putative valyl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-216  720.2   1.1   2.9e-215  716.1   1.1    2.2  1  tRNA-synt_1      tRNA synthetases class I (I, L, M and V)
    3.1e-54  184.1   0.0    3.1e-54  184.1   0.0    2.0  3  Pkinase          Protein kinase domain
    3.3e-31  108.3   0.1    3.3e-31  108.3   0.1    2.2  2  Anticodon_1      Anticodon-binding domain of tRNA
    6.8e-17   61.6   0.0    1.1e-16   60.9   0.0    1.3  1  Pkinase_Tyr      Protein tyrosine kinase
    3.8e-13   48.9   0.2    3.4e-05   22.8   0.0    4.3  4  tRNA-synt_1g     tRNA synthetases class I (M)
    1.4e-06   28.5   0.0    0.00021   21.3   0.1    2.5  2  APH              Phosphotransferase enzyme family
    1.9e-06   27.5   9.4    1.3e-05   24.8   0.0    3.3  3  tRNA-synt_1_2    Leucyl-tRNA synthetase, Domain 2
     0.0026   18.0  10.2     0.0026   18.0  10.2    2.9  2  Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
     0.0088   14.9   0.1      0.042   12.6   0.0    2.0  2  Pkinase_fungal   Fungal protein kinase
  ------ inclusion threshold ------
      0.064   12.6   0.0       0.13   11.6   0.0    1.5  1  Kdo              Lipopolysaccharide kinase (Kdo/WaaP) family
       0.18   11.4   1.6       0.32   10.6   0.1    2.2  2  Choline_kinase   Choline/ethanolamine kinase
       0.66    9.1   6.6          1    8.5   6.6    1.2  1  Med3             Mediator complex subunit 3 fungal
        7.3    6.3  22.6      0.042   13.7   5.5    2.3  2  ERM              Ezrin/radixin/moesin family


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  716.1   1.1  2.1e-218  2.9e-215       2     602 .]     420    1042 ..     419    1042 .. 0.98

  Alignments for each domain:
  == domain 1  score: 716.1 bits;  conditional E-value: 2.1e-218
  tRNA-synt_1    2 lyekWeeedvfkkelekeke...kkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkk 94  
                   +y++We +++fk++l+ + +   k +f+++++PP+vtG+lH+Ghal+++l+d++ir +rmkGk++l+vpG+DhaG++++++vek+l+++e+k+r++
   KKY18802.1  420 RYDWWESNGFFKPQLDPDGKpkdKGTFVIPIPPPNVTGALHMGHALTNALQDTMIRHARMKGKTTLWVPGCDHAGISTQSVVEKMLWRTEGKSRHE 515 
                   79************986644422777********************************************************************** PP

  tRNA-synt_1   95 lgreefrekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEveykdkk...... 184 
                   +gre  ++k+++wk++y+++i+ q++rlG s+D++re++T+d+++++av e+fv l+++g+iyr+++lvnw+t+l+t+ls+lEv++ d        
   KKY18802.1  516 YGREVLVNKIWDWKDKYHKNINGQLRRLGGSMDWSREAFTMDENFSAAVAETFVTLHEEGIIYRANRLVNWCTALSTSLSNLEVDNVDLPgrtlls 611 
                   ****************************************************************************************9999**** PP

  tRNA-synt_1  185 ..........dalihvafpladkeevklviaTTtPeTllgdtavavnpeldyvitkeklilaeallkslvkkesekkiledergkeLegkevelpl 270 
                             ++l+h+ ++++++++ k++iaTT+PeT+lgdt++av+p                                d+r++e+ gk++++p+
   KKY18802.1  612 vpgydkkiefGVLTHFYYEMEGSDK-KIEIATTRPETMLGDTGIAVHPS-------------------------------DKRYTEFLGKRAKHPF 675 
                   *************************.***********************...............................9*************** PP

  tRNA-synt_1  271 .vnrkipiiaddyvdkeaGtGvVkiaPahdedDyevgkkynlevinildedgtlteeaaefeglkvfdarkkvveelkekglllkaekiehsvpfc 365 
                    ++r ++i+a d vd e+GtG+Vki+Pahd+ D++ gk+++le+ini+++dgtl+++a+ f+g+k+ dar+kv+++lkekgl++k  ++ + vp+c
   KKY18802.1  676 iEGRYLRIVAADDVDPEFGTGAVKITPAHDAKDFARGKQHDLEFINIMNDDGTLNDNAGPFKGMKRYDARYKVIDALKEKGLYVKWVDNPMPVPMC 771 
                   667899****************************************************************************************** PP

  tRNA-synt_1  366 erskkpiiyrateqWfvrvkeladaalkave..kvqfvpkskekryaswleniqdWciSRqrwWGhriplfvsketeevvvreelkelvagreeee 459 
                   +++k++i++ ++ qW++ +kela+ al++v+  +v++ p+s+ek+y+ wleniqdWc+SRq+wWGhr p+++ + ++e++ +++ +++v + ++ee
   KKY18802.1  772 QKTKDIIEPIMKAQWWMGMKELAKPALEVVRngSVKIRPESAEKNYYMWLENIQDWCLSRQLWWGHRAPAYFIDIKGETHDDSDGDYWVCAHSQEE 867 
                   *******************************999************************************************************** PP

  tRNA-synt_1  460 aekkalekeakdklkkekgelekdedvlDvWFsSgswpfstlgypeedteelkkffpadmlleGlDiirgWvarlillslaltgsePfkevlvhgl 555 
                   a++ka++k  ++k+     el+ dedvlD+WFsSg wpf+tlg+p++ t++l++f+p++ml++G+Di+++Wvar+i+l+l++tg+ Pf+ev++h+l
   KKY18802.1  868 ARAKAEKKFPNKKF-----ELKWDEDVLDTWFSSGQWPFATLGWPNK-TKDLENFYPTSMLETGWDILFFWVARMIMLGLKMTGKIPFHEVYCHSL 957 
                   *****999999999.....****************************.************************************************ PP

  tRNA-synt_1  556 vrdeeGrKmSKslgNvidpldvik.....................................kygadalRltli.lsdvgrdinls 602 
                   vrd+eGrKmSKslgNvidpldvi+                                     ++gadalR+ l+ +++ g di+++
   KKY18802.1  958 VRDSEGRKMSKSLGNVIDPLDVINgttldslygkllsgnldqkeldrakawqksafpqgisECGADALRFSLVnYTTGGGDIAFD 1042
                   *************************************************************************99*****99875 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.1   0.0   2.2e-57   3.1e-54       1     223 [.      32     245 ..      32     285 .. 0.91
   2 ?   -2.8   0.0       2.4   3.3e+03     102     122 ..     559     579 ..     553     579 .. 0.88
   3 ?   -4.4   1.2       7.3     1e+04      13      48 ..    1318    1354 ..    1316    1362 .. 0.67

  Alignments for each domain:
  == domain 1  score: 184.1 bits;  conditional E-value: 2.2e-57
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEE..EEEE--TTEBHHHHHHHHSS-- CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdely..lvleyveggeladllerkgsls 96 
                 ye+++k+G+G++++V+++++  + ++ +vK++k  k+kk k     rEikil++l+  pn+v l++v++++++ +  lv+e v+++++ +l+ r   + 
  KKY18802.1  32 YEVVRKIGRGKYSEVFEGINVVNYQKCVVKVLKPVKKKKIK-----REIKILQNLSgGPNVVALLDVVRDSQSKTpsLVFENVNNTDFRTLYPR---FV 122
                 7899*****************************99988855.....7***********************6555445***************86...** PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHS CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelessskltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltg 193
                 + +++++++++l++l+y+Hskgi+HrD+Kp+N++id ek++l+++D+Gla+ ++ +++++ +v+++++  PE+l + +ey+ + D+WslG ++++++++
  KKY18802.1 123 DYDVRFYIYELLKALDYCHSKGIMHRDVKPHNVMIDhEKRKLRLIDWGLAEFYHAGTEYNVRVASRYFKGPELLvDFQEYDYSLDMWSLGAMFASMIFR 221
                 ************************************88888*********************************888********************** PP

                 S-STTTSSHHHHHHHHHHTHHHHHHHCTSH CS
     Pkinase 194 kppfsgekgkekvekeldqlekilkilget 223
                 k+pf + ++      ++dql+ki+k+lg+ 
  KKY18802.1 222 KEPFFHGNS------NTDQLVKIAKVLGTD 245
                 *****4444......678999999999853 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.4
                 HHHHHHHHHHHHHHHTTEE-S CS
     Pkinase 102 kiakqilegleylHskgiiHr 122
                 ++ + ++e +  lH++gii+r
  KKY18802.1 559 NFSAAVAETFVTLHEEGIIYR 579
                 67788999999*********8 PP

  == domain 3  score: -4.4 bits;  conditional E-value: 7.3
                  EEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHH CS
     Pkinase   13 GkVykaveketgkivAvKkikkekakkkke.kkvlrE 48  
                  GkV k  +    k +A K+ ++ ++ ++++ +++ +E
  KKY18802.1 1318 GKVAKSEKIMAAKNWATKVSAEVREAEESKmRDAEAE 1354
                  7777777778888888888877776666553444444 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   0.1   2.4e-34   3.3e-31       1     143 [.    1087    1231 ..    1087    1239 .. 0.88
   2 ?   -1.4   0.6       1.5   2.1e+03      94     133 ..    1318    1365 ..    1308    1369 .. 0.63

  Alignments for each domain:
  == domain 1  score: 108.3 bits;  conditional E-value: 2.4e-34
  Anticodon_1    1 drwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedkra.aqevllevletllrllaPfmPfitEelwqr.eee 94  
                   ++wil+++n++ k v+ea+e+ +f +  +aly  ++n+lcd+++e +k +++   ++++++ a+++l+++le +l ll+P+mPfitE+lwq+  ++
   KKY18802.1 1087 EKWILHKFNNTTKAVDEAIESREFTDSTHALYPYWLNQLCDTFIENSKFIIAEGVPQEEQEsAKQTLYTALEGGLLLLHPIMPFITEHLWQKlPRR 1182
                   69*************************************************98888777777******************************9444 PP

  Anticodon_1   95 elgkkesimlaewpe.kaeelekeleeeevellkeivkairklrselkik 143 
                   e +k  sim+a++pe ++++  +e+  +++e++ +i   ir+l ++++ k
   KKY18802.1 1183 EGDKTLSIMVADFPEfQSSFDAPEA-AAKYEFVMAISAGIRSLLATYQFK 1231
                   446779*********9998885555.569999989998888887777766 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.5
  Anticodon_1   94 eelgkkesimlae.wpe.kaeel.ekel.e....eeevellkeivkai 133 
                   +++ k+e im a+ w    ++e  e+e+ +    e+ev +++e++k +
   KKY18802.1 1318 GKVAKSEKIMAAKnWATkVSAEVrEAEEsKmrdaEAEVVRFEEVIKEL 1365
                   566788999999999864443335433332556777777777777765 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   8.2e-20   1.1e-16       3     203 ..      34     223 ..      32     242 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 8.2e-20
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvct..keepllivteyvkgGdLlkfLrkkek 97 
                  + +k+G+G++++V+eg        + +k++vK+lk  +++    ++ +e+ki+++l   pn+v+ll v+   ++++  +v+e v++ d+++   +   
   KKY18802.1  34 VVRKIGRGKYSEVFEGINV----VNYQKCVVKVLKPVKKK----KIKREIKILQNLsGGPNVVALLDVVRdsQSKTPSLVFENVNNTDFRTLYPRF-- 121
                  6799*************99....88999******776555....599*********999**********97777779***********99876554.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETT.EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenk.vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ftsksDvWsfGv 193
                        d+  +++++ k+++y +sk ++Hrd+   Nv+++++k + ++ D GLa+  +   ey+++  +     +  pE l + + +  + D+Ws G 
   KKY18802.1 122 ---VDYDVRFYIYELLKALDYCHSKGIMHRDVKPHNVMIDHEKrKLRLIDWGLAEFYHAGTEYNVRVAS---RYFKGPELLVDFQeYDYSLDMWSLGA 213
                  ...556677789***************************986549**********99666666555433...34669**987755499999******9 PP

                  HHHHHHTTSS CS
  Pkinase_Tyr 194 llwEiftlge 203
                  +   ++   e
   KKY18802.1 214 MFASMIFRKE 223
                  8877766444 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.5e-08   3.4e-05       6     132 ..     451     596 ..     446     602 .. 0.69
   2 !   11.0   0.1     9e-05      0.12     176     238 ..     780     840 ..     761     853 .. 0.82
   3 !    9.1   0.0   0.00036       0.5     313     350 ..     950     988 ..     924    1009 .. 0.72
   4 ?   -3.4   0.0       2.2     3e+03     344     368 ..    1019    1043 ..    1015    1047 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.5e-08
                   --B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHH.....TTS-HHHH.....H.......HHHHHHHHHHHHHTT--- CS
  tRNA-synt_1g   6 alpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAek.....egvtpeel.....v.......ekvheeikelfkklnisf 85 
                   + p ++g+lH+Gh+l+    D ++R+ r++g+ +l+v g D+ G+ ++   ek     eg + +e+     v       +k+h++i+ ++++l+ s 
    KKY18802.1 451 PPPNVTGALHMGHALTNALQDTMIRHARMKGKTTLWVPGCDHAGISTQSVVEKmlwrtEGKSRHEYgrevlVnkiwdwkDKYHKNINGQLRRLGGSM 547
                   557789*********99999************************99887665422222444444331111121112222567777777788877776 PP

                   SEEEE..TTSHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-G CS
  tRNA-synt_1g  86 dkygr..ttseehkelvqeifkklkekgliyekeieqlycpkderflpd 132
                   d   +  t +e+ + +v+e f +l+e+g iy+ +  + +c++ ++ l++
    KKY18802.1 548 DWSREafTMDENFSAAVAETFVTLHEEGIIYRANRLVNWCTALSTSLSN 596
                   6544333677777788888888888888888888888888877776665 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 9e-05
                   .EEE.EEEEEE-GGGGHHHHHHHH.HH-TT.SHHHHHHHH.HHHHT----EE-ESS-SSS-EET CS
  tRNA-synt_1g 176 pevketehlffklskfekklkewieeeeke.leenvkkivkewlkegLkdlaisrdldwGipvP 238
                   p++  + ++++ +++++k   e +++ + +  +e+++k    wl++ ++d+++sr+l wG + P
    KKY18802.1 780 PIM--KAQWWMGMKELAKPALEVVRNGSVKiRPESAEKNYYMWLEN-IQDWCLSRQLWWGHRAP 840
                   344..4899999******99999988887789999999999***99.*************9998 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00036
                   S-EEEE--E.EE--------------HHHHHHHH-HHHH CS
  tRNA-synt_1g 313 kkvvaheyl.tvegkKlSkSrgvvvkakealerldadll 350
                   ++v+ h+ +   eg+K+SkS g+v+++ ++++  + d l
    KKY18802.1 950 HEVYCHSLVrDSEGRKMSKSLGNVIDPLDVINGTTLDSL 988
                   4455555542479*****************999998877 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 2.2
                    HH-HHHHHHHHHHHS-TTS-EEE-H CS
  tRNA-synt_1g  344 rldadllRYylaaeapekkDldfsw 368 
                    ++ ad+lR+ l+  +    D+ f  
    KKY18802.1 1019 ECGADALRFSLVNYTTGGGDIAFDV 1043
                    6789*********999999999976 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.027        37       4      84 ..      37     116 ..      34     127 .. 0.73
   2 !   21.3   0.1   1.5e-07   0.00021     165     205 ..     142     181 ..     132     210 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.027
                 EE--.SSCEEEEEEETT..--EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS CS
         APH   4 elsggasnrtylvttpa..gryvlrrnpparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr 84 
                  ++ g ++ +++       ++ v+++  p   + +i re ++l++L++  + v ++l+    d ++ ++++++e v  +++++
  KKY18802.1  37 KIGRGKYSEVFEGINVVnyQKCVVKVLKPV-KKKKIKREIKILQNLSGG-PNVVALLDVVR-DSQSKTPSLVFENVNNTDFRT 116
                 55556556566544433255889*******.****************99.55888888554.444444899999887777665 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 1.5e-07
                 -EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHH CS
         APH 165 ptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDl 205
                 +++++H+D +p+N+++d ++ ++  +iD+++a   ++  + 
  KKY18802.1 142 SKGIMHRDVKPHNVMIDHEKRKL-RLIDWGLAEFYHAGTEY 181
                 5799*************777777.89*****9887776665 PP

>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0015       2.1      12      44 ..     627     659 ..     622     666 .. 0.87
   2 !   24.8   0.0   9.6e-09   1.3e-05      85     144 ..     667     727 ..     661     751 .. 0.88
   3 ?   -2.1   0.1       1.7   2.4e+03      37      75 ..    1292    1330 ..    1285    1337 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0015
  tRNA-synt_1_2  12 iefkveeseeklevfttrpdtlfGvtfvalape 44 
                    + +++e+s++k+e+ ttrp+t+ G t +a+ p+
     KKY18802.1 627 FYYEMEGSDKKIEIATTRPETMLGDTGIAVHPS 659
                    568899999***************999998776 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 9.6e-09
  tRNA-synt_1_2  85 tglkaihPit.gekipiwvanyvlmeygtgavmavPahdqrDfeFakkynlpikqvikped 144
                     g  a hP+  g+ + i  a+ v  e+gtgav   Pahd +Df+  k+++l+++++++ ++
     KKY18802.1 667 LGKRAKHPFIeGRYLRIVAADDVDPEFGTGAVKITPAHDAKDFARGKQHDLEFINIMNDDG 727
                    578899**876999*****************************************998544 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.7
  tRNA-synt_1_2   37 tfvalapehplveklaekkkelaafieevkkkseserel 75  
                      ++ +a   +l+++ ++ + +l++   +v+k++++ +++
     KKY18802.1 1292 VYLRIAGRVDLAKEKEKAETQLNNAKGKVAKSEKIMAAK 1330
                     689999999999999999999999998888888777655 PP

>> Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   6.8         3   4.1e+03       8      26 ..     363     381 ..     357     404 .. 0.79
   2 !   18.0  10.2   1.9e-06    0.0026       1      65 [.    1301    1365 ..    1301    1366 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3
  Val_tRNA-synt_C   8 RLeKeLaklekeiervqkK 26 
                       LeKe +k+eke + ++kK
       KKY18802.1 363 ELEKERKKAEKEKKFLEKK 381
                      5889999999999888888 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1.9e-06
  Val_tRNA-synt_C    1 DvekeraRLeKeLaklekeiervqkKLanpgFveKAPaeVVeeekaklaeleeqaeklkerLskL 65  
                       D++ke+++ e +L+++++ +++ +k +a +++++K+ aeV e+e+ k  ++e++  + +e +++L
       KKY18802.1 1301 DLAKEKEKAETQLNNAKGKVAKSEKIMAAKNWATKVSAEVREAEESKMRDAEAEVVRFEEVIKEL 1365
                       99*****************************************************9999999988 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0     3e-05     0.042     323     364 ..     141     177 ..     130     210 .. 0.78
   2 ?   -1.5   0.0      0.59   8.1e+02     142     186 ..     468     514 ..     457     524 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3e-05
  Pkinase_fungal 323 flkagiLHrDiSenNilitdskkegerkglLiDLDlakelsd 364
                     +  +gi+HrD+  +N++i     +++rk  LiD  la  ++ 
      KKY18802.1 141 H-SKGIMHRDVKPHNVMID----HEKRKLRLIDWGLAEFYHA 177
                     5.89**************9....5578899999999887775 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.59
  Pkinase_fungal 142 eleeplarqraivgRgTtcwrarkeger..gkeyvvKdsWrdaerk.s 186
                      l+++++r++ + g+ T  w    +     ++++v K+ Wr ++++ +
      KKY18802.1 468 ALQDTMIRHARMKGKTT-LWVPGCDHAGisTQSVVEKMLWRTEGKSrH 514
                     57788888888888855.454444333344899********9988744 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.6e-05      0.13     134     166 ..     140     169 ..      65     178 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.6e-05
         Kdo 134 lhragvnHadlyaknillqqeeeeeaeiwliDl 166
                  h+ g++H+d+ ++n++++ e+   +++ liD 
  KKY18802.1 140 CHSKGIMHRDVKPHNVMIDHEK---RKLRLIDW 169
                 6*******************98...99999995 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00023      0.32     148     175 ..     146     173 ..     125     181 .. 0.84
   2 ?   -2.5   0.2       2.3   3.1e+03      98     133 ..    1330    1367 ..    1317    1369 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00023
                     E-S--SGGGEEE.-CTTEEEE--GTT-E CS
  Choline_kinase 148 cHnDlqegNillnkeekklvlIDFEYag 175
                      H D+ ++N++ ++e++kl lID+  a 
      KKY18802.1 146 MHRDVKPHNVMIDHEKRKLRLIDWGLAE 173
                     599*********************7665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.3
                      HHH..HHCCS.TT..ECHHGGCCHCCCTHHHHHHHHHT CS
  Choline_kinase   98 qkw..llnkeaqtkakkekkkkqlklinledlekelek 133 
                      ++w   +  e++  +++++++ +++ +++e++ kel++
      KKY18802.1 1330 KNWatKVSAEVREAEESKMRDAEAEVVRFEEVIKELDR 1367
                      34433334444555555566666666666666666655 PP

>> Med3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   6.6   0.00076         1     125     225 ..     291     398 ..     271     460 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00076
        Med3 125 nkkGkasaskasvvnstpssaastPtttatPgantktaakslpapnata......tigtptnsaaaaattatttssqakkPrkPrq..tkkaaakaaak 215
                  ++G+ +    s+ + t s  +  P t++   a+ ktaa++ p  ++t       +ig p n  a  + ta+    + kk  k ++   kka+ +aaa 
  KKY18802.1 291 GTRGDGTPIFCSSGTPTGSVSGPPPPTSSETAAALKTAAENDPLGQSTGgkdagsAIGKPENGVADKPKTAKELEKERKKAEKEKKflEKKAK-QAAAA 388
                 5556653333333333333344445566666777888888888888887999999****************9999999999888764356643.33333 PP

        Med3 216 aqaqaqaqaq 225
                 a a  q + +
  KKY18802.1 389 AAAPTQPKTK 398
                 4444444333 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   5.5     3e-05     0.042      30      82 ..     356     408 ..     347     416 .. 0.85
   2 ?   -1.8   9.1       1.7   2.3e+03      38      96 ..    1302    1360 ..    1297    1369 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3e-05
         ERM  30 eseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekekler 82 
                 ++ +ta++L++++++ae+e++ Le+ka++a ++ ++  + + ke++ k +  +
  KKY18802.1 356 DKPKTAKELEKERKKAEKEKKFLEKKAKQAAAAAAAPTQPKTKEKKVKTHAPA 408
                 56789**************************9999988888888887776555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.7
         ERM   38 LaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarlee 96  
                  La+++++ae++ ++ + k a+ e+ +++ + +++ ++e +e+ e k+r+ae+e+ r+ee
  KKY18802.1 1302 LAKEKEKAETQLNNAKGKVAKSEKIMAAKNWATKVSAEVREAEESKMRDAEAEVVRFEE 1360
                  77778888888888888888888888888888888888888888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1083  (0.0604049); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.10u 0.33s 00:00:01.43 Elapsed: 00:00:00.58
# Mc/sec: 7153.37
//
Query:       KKY18803.1  [L=477]
Description: putative mitochondrial integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-50  170.7   5.2      1e-46  159.3   3.6    2.2  2  DUF2417         Region of unknown function (DUF2417)
  ------ inclusion threshold ------
      0.081   11.4   0.5       0.11   11.0   0.5    1.2  1  K_trans         K+ potassium transporter
      0.091   12.6   2.1        9.5    6.1   0.0    2.7  3  ECSCR           Endothelial cell-specific chemotaxis regulato
       0.11   12.6   2.9        2.5    8.3   0.2    2.4  2  Pox_A14         Poxvirus virion envelope protein A14
       0.24   11.0   4.7        1.3    8.6   0.0    2.2  2  Virul_fac_BrkB  Virulence factor BrkB
       0.32   11.0   7.3       0.58   10.2   7.3    1.4  1  DUF2269         Predicted integral membrane protein (DUF2269)
        3.7    8.2   5.7         52    4.5   0.0    2.9  3  RCR             Chitin synthesis regulation, resistance to Co


Domain annotation for each model (and alignments):
>> DUF2417  Region of unknown function (DUF2417)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   4.7e-05      0.12      13      40 ..      48      76 ..      35      78 .. 0.81
   2 !  159.3   3.6   3.9e-50     1e-46     106     236 .]      76     206 ..      75     206 .. 0.99

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.7e-05
     DUF2417 13 hrt.igeessegylspddpavspynlwkv 40
                +rt + ++s+egylspddpavspynlw +
  KKY18803.1 48 ERTrLLQPSEEGYLSPDDPAVSPYNLWAM 76
                444466778999***************75 PP

  == domain 2  score: 159.3 bits;  conditional E-value: 3.9e-50
     DUF2417 106 drvlnivlavLllvnllllllvkytReregfvgiasvlWaaltfllgilldryvekgkkeeeerltgreetrhtlkewlsilvrniikllllvvlillt 204
                 +++l+++++v+llv+++++l+v ++R +eg++giasv+Wa+l++l++il +r+v +gk+eeeerltgr+etr+tl+ew++++++++i++++++++illt
  KKY18803.1  76 MMILSLIISVILLVDMIIILSVARLRLEEGWIGIASVIWATLMSLWNILSNRTVRWGKREEEERLTGRAETRKTLREWCAVFTATFIMAIMVIITILLT 174
                 7899*********************************************************************************************** PP

     DUF2417 205 ltllLralDaslespgkfywvdnhkyqlHlkC 236
                 +tl Lra+Da+l +pg++++vd+++yq+H +C
  KKY18803.1 175 ATLSLRARDATLLPPGERIFVDGDQYQVHFAC 206
                 ******************************** PP

>> K_trans  K+ potassium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5   4.3e-05      0.11     381     445 ..      74     137 ..      67     211 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.3e-05
     K_trans 381 lklilvllvlllfllidllflsanlkKipeGgwvplllavvlllimltWkygrkkllekeaeeev 445
                 + +++  l++ ++ll+d++++ +      e gw+ ++ +v+ +++m +W+  ++++++  ++ee 
  KKY18803.1  74 WAMMILSLIISVILLVDMIIILSVARLRLEEGWIGIA-SVIWATLMSLWNILSNRTVRWGKREEE 137
                 77888888999999**********999999*****86.7999********998877766443332 PP

>> ECSCR  Endothelial cell-specific chemotaxis regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.3    0.0076        20      26      49 ..      77     102 ..      61     104 .. 0.76
   2 ?    6.1   0.0    0.0037       9.5      16      49 ..     147     181 ..     133     184 .. 0.67
   3 ?   -3.6   0.0         4     1e+04      44      61 ..     413     430 ..     410     432 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0076
       ECSCR  26 gvisfi..vilvvvviilvsvvslrf 49 
                  ++s+i  vil+v +ii++sv  lr+
  KKY18803.1  77 MILSLIisVILLVDMIIILSVARLRL 102
                 4556552258888899999**99996 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0037
       ECSCR  16 setvltvaafgvisfiv.ilvvvviilvsvvslrf 49 
                  +t+   +a    +fi+ i+v++ i+l + +slr 
  KKY18803.1 147 RKTLREWCAVFTATFIMaIMVIITILLTATLSLRA 181
                 45555555555667876367777788889999995 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 4
       ECSCR  44 vvslrfkcrknkesedpq 61 
                 vvs    +rk +e e  q
  KKY18803.1 413 VVSSGVEVRKSQEWESKQ 430
                 788889999999988776 PP

>> Pox_A14  Poxvirus virion envelope protein A14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.3     0.018        46      41      65 ..      70      94 ..      61     101 .. 0.82
   2 ?    8.3   0.2   0.00097       2.5      39      68 ..     148     177 ..     142     186 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.018
     Pox_A14 41 dkawralsivsFilgivillglllf 65
                 + + a+ i+s i+++++l+ +++ 
  KKY18803.1 70 PYNLWAMMILSLIISVILLVDMIII 94
                56777999**************986 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00097
     Pox_A14  39 ttdkawralsivsFilgivillglllfsmy 68 
                 +t + w a+   +Fi++i++++++ll ++ 
  KKY18803.1 148 KTLREWCAVFTATFIMAIMVIITILLTATL 177
                 355689999999*************98875 PP

>> Virul_fac_BrkB  Virulence factor BrkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   2.8     0.055   1.4e+02     125     189 ..      76     131 ..      72     134 .. 0.59
   2 ?    8.6   0.0    0.0005       1.3     100     138 ..     141     179 ..     136     200 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.055
  Virul_fac_BrkB 125 llllslvlsvflqslllasapllglglelsellllqllrwlvallllvlafallYrvlpnvkvrl 189
                     +++lsl++sv+l +   +++ l+ + l l         +w+ ++ +++++++ l  +l n+ vr+
      KKY18803.1  76 MMILSLIISVILLV--DMIIILSVARLRL-------EEGWIGIASVIWATLMSLWNILSNRTVRW 131
                     56777777777755..3333122222222.......22333444578999999999999999998 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0005
  Virul_fac_BrkB 100 ygveesrsflrkrllsllllllllvllllslvlsvflqs 138
                      g+ e+r+ lr +   ++++++++++++++++l++ l  
      KKY18803.1 141 TGRAETRKTLREWCAVFTATFIMAIMVIITILLTATLSL 179
                     567889999*********************999998866 PP

>> DUF2269  Predicted integral membrane protein (DUF2269)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   7.3   0.00023      0.58      46     145 ..      74     172 ..      67     176 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00023
     DUF2269  46 ladwlftatavillpvtGlwlvhlagwplkqsWlllslvLyllagalwlpVvwlqirlrrlaeaaeeegaalpeeyvrlfriwfa..lgvlaflaliai 142
                 +a +++   + ++l+v  ++++ +a + l+++W+ + +v+++  + lw+++  + +r  +  e+   +     +e+ + +r w a  ++ ++++++++i
  KKY18803.1  74 WAMMILSLIISVILLVDMIIILSVARLRLEEGWIGIASVIWATLMSLWNILSNRTVRWGKREEEERLT---GRAETRKTLREWCAvfTATFIMAIMVII 169
                 566778888999999999999999**************************996666655544433333...3455555555555400445555555555 PP

     DUF2269 143 fvL 145
                 ++L
  KKY18803.1 170 TIL 172
                 555 PP

>> RCR  Chitin synthesis regulation, resistance to Congo red
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.6       2.9   7.4e+03      84     104 ..      27      49 ..       7      67 .. 0.44
   2 ?    3.4   2.4     0.044   1.1e+02       5      40 ..      79     115 ..      74     128 .. 0.76
   3 ?    4.5   0.0      0.02        52       5      53 ..     161     263 ..     153     281 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.9
         RCR  84 qeGkfhe..lqqPqqayqreesa 104
                 ++G+ ++    qP+  +++++++
  KKY18803.1  27 ESGAPEHntRSQPTRRHREPDER 49 
                 22322222244455444444333 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.044
         RCR   5 faiiivlillvllltlr.vakrRrrrGlqplygtgWl 40 
                 + +ii +illv +++++ va+ R ++G   +++  W+
  KKY18803.1  79 LSLIISVILLVDMIIILsVARLRLEEGWIGIASVIWA 115
                 445666666665555555**********999999998 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.02
         RCR   5 faiiivlillvllltlrvakrRrr.................................................rGlqplygtgWlvsa......pppPs 48 
                 f+++i++i+ +ll+ +++ + R                                                   + l+p+ + +W+ ++         P 
  KKY18803.1 161 FIMAIMVIITILLTATLSLRAR-DatllppgerifvdgdqyqvhfacvgnvtynddgsrrptiileagedpveESLEPFVYDAWMNGTidrycyWDRPG 258
                 2333333333333333344444.3588888888888888888888888888888888888888888888888888888888888855234455555666 PP

         RCR  49 Ygqsq 53 
                 Y  s+
  KKY18803.1 259 YAWSD 263
                 65554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       933  (0.0520386); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3262.73
//
Query:       KKY18804.1  [L=657]
Description: putative endoplasmic reticulum and nuclear membrane proteinc [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.7e-131  438.2   0.0   2.2e-131  437.8   0.0    1.1  1  NPL4      NPL4 family
      5e-70  234.3   0.1    7.4e-70  233.7   0.1    1.3  1  zf-NPL4   NPL4 family, putative zinc binding region
     0.0017   18.8   0.0     0.0045   17.4   0.0    1.7  1  UN_NPL4   Nuclear pore localisation protein NPL4


Domain annotation for each model (and alignments):
>> NPL4  NPL4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  437.8   0.0  3.6e-135  2.2e-131       1     308 []     281     594 ..     281     594 .. 0.98

  Alignments for each domain:
  == domain 1  score: 437.8 bits;  conditional E-value: 3.6e-135
        NPL4   1 RlgylyGryekydevPlGikavveaiyEPpqedeldgltlledeeekevdeiakklglekvGviftDlldagakdgtvlckRhkdsyflsslEvilaak 99 
                 R+gy+yGrye+y+evPlG kavv+aiyEPpq +e+dg+tl ++++ek+vde+ak +gl +vGviftDl+++++ d tv+ckRh++sy+lsslE+++aa+
  KKY18804.1 281 RIGYMYGRYEEYKEVPLGTKAVVHAIYEPPQIGEVDGVTLRDWDNEKDVDEMAKLCGLDRVGVIFTDLISSDDPDETVICKRHINSYYLSSLEIVFAAR 379
                 9************************************************************************************************** PP

        NPL4 100 lqlkhpnvtkysetgkfsskFvtvvvsgdeegeieiesyqvsneaealvradiiepstdPslayvre......sseerYvpevfYkkkneyglevkena 192
                  q+  p++tk+setg+f+s+F+t+v+sgde+g+i ++syq+sn+a+++vradiieps+dPs+++v++       +++rY+pevfY+++neyg++v+ena
  KKY18804.1 380 QQALRPRPTKWSETGQFGSNFITCVLSGDENGDITVTSYQASNTAVEMVRADIIEPSADPSVMLVQSeedeamPQRKRYIPEVFYRRVNEYGANVQENA 478
                 ******************************************************************98898887889********************** PP

        NPL4 193 kPalPveyLlvslthgfpkepkplFkkkakfpienRealgelqdlkelakylkssa.kkeleealsdfHlllylakleilskeelkllleavkekdeek 290
                 kP++PveyLlv+lt g+p +pkp+F +++ fp+enRe++ ++q   +l k+l++ a + +  ea+sdfHl++y+a+l+ilsk+el+ll+++++++d ++
  KKY18804.1 479 KPSFPVEYLLVTLTYGVPIDPKPTF-TSSGFPVENREVIAQSQYPGALLKKLNAPAkSGNPMEAVSDFHLVCYVASLGILSKDELALLCRVATTHDIAE 576
                 *************************.999*******************999999873667899************************************ PP

        NPL4 291 llelvesegwktlltile 308
                  ++l++s+gw+tll++l+
  KKY18804.1 577 GMQLMNSPGWATLLAVLQ 594
                 **************9986 PP

>> zf-NPL4  NPL4 family, putative zinc binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.7   0.1   1.2e-73   7.4e-70       1     145 []     134     278 ..     134     278 .. 0.99

  Alignments for each domain:
  == domain 1  score: 233.7 bits;  conditional E-value: 1.2e-73
     zf-NPL4   1 vkedevDellekqdGkikrkrdeklcrhgekgmceycsplepydeeylkekkikhlsfhaylrklnekknkkesssskiapLeelsykvkkecksghap 99 
                 v+++++D++l++qdGki+r+rd+k+crhg+kgmc+yc+plepy  eyl+e+kikhlsfh+ylrk+n++knk e +ss+++pL+e+ ++vk +c+sgh++
  KKY18804.1 134 VRQSPLDDRLDRQDGKIPRNRDQKMCRHGPKGMCDYCMPLEPYAPEYLAERKIKHLSFHSYLRKINSSKNKPELGSSYMPPLSEPFFRVKVPCPSGHPS 232
                 7899*********************************************************************************************** PP

     zf-NPL4 100 wPkgicskcqPsaitlqrqkfRmvDhvefesseivdkfldaWRktg 145
                 wP+gic+kcqPsaitlq q+fRmvDhvef+s++i+d++ld+WR++g
  KKY18804.1 233 WPEGICTKCQPSAITLQPQQFRMVDHVEFASKDIIDTILDFWRSSG 278
                 ********************************************98 PP

>> UN_NPL4  Nuclear pore localisation protein NPL4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   7.5e-07    0.0045       5      76 ..       1      78 [.       1      81 [. 0.83

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 7.5e-07
                -EEEEEETTEEEEEEE-TTSBHHHHHHHHHHHS..S-STTT-EEESST....TCGCCCSSSSSSCCCTCH--TT-EEE CS
     UN_NPL4  5 iiiRvqSadGikRieisekstlktllekvaeel..kfsengfslyler....nkttelvssssksvkevglkhGdmly 76
                +++R  S +G  R+++++  t   ll k+ ++l   +++   sl+         +++l+s + +++++vgl+hGd l+
  KKY18804.1  1 MLLRFESREGQFRLTVNPADTFPSLLAKILDNLpkDVDSSTVSLSNRPigagGEERLLQSLDGVRLEQVGLRHGDKLF 78
                689*****************************94456667777765432222457789999**************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.52
# Mc/sec: 3831.47
//
Query:       KKY18805.1  [L=774]
Description: putative high affinity camp [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-67  227.4   0.0      3e-67  226.8   0.0    1.3  1  PDEase_I  3'5'-cyclic nucleotide phosphodiesterase


Domain annotation for each model (and alignments):
>> PDEase_I  3'5'-cyclic nucleotide phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.8   0.0   1.7e-71     3e-67       1     236 [.     166     425 ..     166     427 .. 0.92

  Alignments for each domain:
  == domain 1  score: 226.8 bits;  conditional E-value: 1.7e-71
                 SSSHHHHHHHHHHHHHHHHCCHCCCC.....................S-HHHHHHHHHHHHHTTTT--S--HHHHHHCT-HHHHHCCCSSHHHHHHHHH CS
    PDEase_I   1 YHNfrHAadVlqalfyllkkeklkee.....................ltpleilalliaalcHDvdHpGtnNsFlvnskselailYndesvLEnhHlal 78 
                 YHNfrHA+dVlq++fy+l + +  +                      ++p+e+++lli+a++HDv+HpG+nN Flv+ +++la+lYnd+svLE +H+a+
  KKY18805.1 166 YHNFRHAIDVLQSVFYFLVQIQALPAypqngetidhsppdpstlaslVKPFEAMTLLISAIGHDVGHPGVNNMFLVRLNAPLAQLYNDQSVLEAFHCAA 264
                 ******************99888877899********************************************************************** PP

                 HHHHHTSGGG-TTTTS-HHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHCCTTS-TTTCT......-HHHHHHHHHHHHHHHHTGCCCS-HHHHHHHH CS
    PDEase_I  79 afqllkkeecnifknlskeeykelrkliielIlaTdmakhfelleklkelvkkkeknslnke.....eeedkklllsllikaaDisnptkpweiskkwa 172
                 + q+l+++    f+       k lrkl+i++IlaTdm  h e++++l +l++k   +++ +e      e+ k l++ llik+aDisn+++pw i+++w+
  KKY18805.1 265 YSQILRQHWPAAFE------DKALRKLLISSILATDMGIHSEYMQELGHLQSKVGDKKTIEEwspkdMEQYKVLTCGLLIKCADISNVARPWAIAERWT 357
                 *******9444444......459************************99998876666555578888888888999*********************** PP

                 HHHHHHHHHHHHHHHHCT----....GGGTSSC...HHHHHHHHHHTHHHHHHHHHHC-GGGHHHHHH CS
    PDEase_I 173 elvleEffeqgdeekelglpvs....plmdrektslaksqigFidfvvkplfealakllpelkellde 236
                 +l++eEf +qg++eke g++      p    +  +la++qigF++ ++ plf+ +a++lp+++   +e
  KKY18805.1 358 HLLQEEFANQGEMEKEVGMDSClfggPPELGNMLKLANAQIGFMSLFAFPLFDGVADVLPQISFAPQE 425
                 *******************999888877777778899************************9887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (774 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.35s 00:00:01.02 Elapsed: 00:00:00.49
# Mc/sec: 4770.57
//
Query:       KKY18806.1  [L=357]
Description: putative methyltransferase domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-17   63.1   0.0    3.9e-17   62.6   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
      2e-12   47.2   0.0    7.7e-06   25.8   0.0    2.1  2  Methyltransf_31  Methyltransferase domain
    1.3e-10   41.8   0.0      3e-10   40.7   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    1.9e-06   28.4   0.0    3.4e-06   27.6   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    2.1e-06   28.4   0.0    1.9e-05   25.3   0.0    2.3  1  Methyltransf_12  Methyltransferase domain
    0.00014   22.0   0.0    0.00029   21.0   0.0    1.5  1  FtsJ             FtsJ-like methyltransferase
    0.00023   20.7   0.0    0.00037   20.0   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
     0.0041   16.7   0.0     0.0089   15.6   0.0    1.5  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.099   12.0   0.0       0.16   11.2   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
       0.14   11.4   0.0       0.27   10.5   0.0    1.4  1  Methyltransf_2   O-methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   2.2e-20   3.9e-17      19     164 ..      88     248 ..      71     249 .. 0.83

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 2.2e-20
  Methyltransf_23  19 klraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatllk 110
                        ++  r+Ld+GcGtG+++  +++ +   +v+g+Dl p++  ++  +++ ++   d ++++    +fd+I++r++   ++ p +l+++++++l+
       KKY18806.1  88 STNPTLRILDLGCGTGNWAIDMADLFPhsHVIGMDLTPIQPRWI--PPNCEFIVDDFEDEWIYHSRFDYIHARMLVVAMKFPFRLFQRAFENLN 179
                      357777****************77755589*************9..77777777778899999******************************* PP

  Methyltransf_23 111 pgGylllseplasl................kedrllldwlylvpagrhisffsarslkelleeaGlevve 164
                      pgG++++++   +                 +  ++ +++l+ + +   i + s + + + l+  G+++++
       KKY18806.1 180 PGGWFEIQDLCFPFellehpisepppqnpsAIQSWCHHMLLGASR-FGIDLNSPTKFTQYLQSIGYTNIQ 248
                      *********754447788899999985544444555555555555.5559***************99986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   4.3e-09   7.7e-06       4      38 ..      92     125 ..      89     127 .. 0.92
   2 !   19.3   0.0   4.1e-07   0.00073      55     137 ..     134     226 ..     131     254 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 4.3e-09
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                      +lr+lDlGCGtG+ ++ +a  l+p+++v+G D ++
       KKY18806.1  92 TLRILDLGCGTGNWAIDMA-DLFPHSHVIGMDLTP 125
                      689****************.899*********876 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 4.1e-07
  Methyltransf_31  55 nveFeqgdieeleklledekfDlilsnevlnaladpdkileeiervlkpggilliedprllaelp.akveeeskay....evvegak....... 136
                      n+eF + d+e+    +  ++fD+i+++ ++ a+++p   +++++++l+pgg + i+d +   el+ + ++e    +    ++++++        
       KKY18806.1 134 NCEFIVDDFEDEW--IYHSRFDYIHARMLVVAMKFPFRLFQRAFENLNPGGWFEIQDLCFPFELLeHPISEPPPQNpsaiQSWCHHMllgasrf 225
                      99*********55..4449***************************************954444444455544444555666666665555554 PP

  Methyltransf_31 137 i 137
                      +
       KKY18806.1 226 G 226
                      1 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   1.7e-13     3e-10       1      97 []      95     182 ..      95     182 .. 0.87

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.7e-13
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      +LdlGcGtG++++++a+ +++++v+g+D+++ + + +        +n+ef++ d+ed    +++fD++++++ +  ++     ++++++++ L+
       KKY18806.1  95 ILDLGCGTGNWAIDMADLFPHSHVIGMDLTPIQPRWIP-------PNCEFIVDDFEDEWIYHSRFDYIHARMLVVAMK--FPFRLFQRAFENLN 179
                      8******************99**********9987654.......577********9888889*******86644444..45689********* PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      pgG
       KKY18806.1 180 PGG 182
                      **9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.9e-09   3.4e-06       1      95 [.      96     185 ..      96     186 .. 0.93

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.9e-09
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgG 92 
                      Ld+GcGtG  a ++a+ +  ++v+g+Dl++ + ++       ++ ++ef+v d+e+  +  + fD + +++ +  ++ p ++++ +   L pgG
       KKY18806.1  96 LDLGCGTGNWAIDMADLFphSHVIGMDLTPIQPRWI------PP-NCEFIVDDFEDEWIYHSRFDYIHARMLVVAMKFPFRLFQRAFENLNPGG 182
                      8**************9999*************9888......33.499********888889******************************** PP

                      EEE CS
  Methyltransf_11  93 llv 95 
                      ++ 
       KKY18806.1 183 WFE 185
                      985 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.1e-08   1.9e-05       1      99 []      96     184 ..      96     184 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.1e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvvasnvlhhlkdirevldnirklL 93 
                      L++GcGtG+ +  +++ +p+++++g+D+ p +         ++++    n+e+ ++d +d+    s fD+++a  ++ ++k + ++++++ + L
       KKY18806.1  96 LDLGCGTGNWAIDMADLFPHSHVIGMDLTPIQP--------RWIP---PNCEFIVDDFEDEWIYhSRFDYIHARMLVVAMKFPFRLFQRAFENL 178
                      8*****************************999........5664...567777777665555588**************************** PP

  Methyltransf_12  94 kpgGrl 99 
                      +pgG++
       KKY18806.1 179 NPGGWF 184
                      ****86 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.6e-07   0.00029      21      73 ..      91     145 ..      63     164 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.6e-07
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCCS CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditdp 73 
                 p+ +++Dlg+++G+w+  ++  + + ++v+++Dl p++p+   p++++i  d+ d+
  KKY18806.1  91 PTLRILDLGCGTGNWAIDMADLFPH-SHVIGMDLTPIQPRwipPNCEFIVDDFEDE 145
                 55789*****************987.99***********9999******9999775 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0     2e-07   0.00037       5      33 ..      95     123 ..      91     128 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2e-07
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     +l++GcG G++ +++A  +P+  ++G+++
      KKY18806.1  95 ILDLGCGTGNWAIDMADLFPHSHVIGMDL 123
                     79*************************97 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     5e-06    0.0089      31      62 ..      91     122 ..      75     125 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5e-06
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEE CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvd 62 
                  + ++lDlGcG+G  ++ +a+  p+ +v  +d
  KKY18806.1  91 PTLRILDLGCGTGNWAIDMADLFPHSHVIGMD 122
                 5567*********************9987776 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.1e-05      0.16      47      80 ..      91     123 ..      81     128 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.1e-05
                      -TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES CS
  Ubie_methyltran  47 rgakvlDvagGtgDlafklsdsvgekgkvvvlDi 80 
                      +  ++lD+ +Gtg++a++++d   ++ +v+++D+
       KKY18806.1  91 PTLRILDLGCGTGNWAIDMADLFPHS-HVIGMDL 123
                      45689***************987554.5666665 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00015      0.27      65      95 ..      94     124 ..      86     129 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00015
                     EEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  65 slvDvGGGtGalakaivsayPtikvivfDlp 95 
                     +++D+G GtG  a  ++ ++P+ +vi +Dl 
      KKY18806.1  94 RILDLGCGTGNWAIDMADLFPHSHVIGMDLT 124
                     799**************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 2231.18
//
Query:       KKY18807.1  [L=557]
Description: putative glutamyl-trna amidotransferase subunit a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-76  258.4   0.0    2.9e-76  257.3   0.0    1.5  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.3   0.0   1.6e-80   2.9e-76       1     450 [.      65     523 ..      65     524 .. 0.87

  Alignments for each domain:
  == domain 1  score: 257.3 bits;  conditional E-value: 1.6e-80
                 HHHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--T.TSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEE CS
     Amidase   1 elveaflkrieavneklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvk.gvpttaGskalenypaekDatvverLkkaGavilgk 98 
                 +lv+a+++ri +vn++l  +vt ++++al++A++ld++ra+g+  gpLhG+Pi++K ni++  +++ taGs al +   ++D+t+ ++L+kaGa+ilgk
  KKY18807.1  65 DLVNAYIARIMEVNSTLR-MVTELNPDALSIASQLDSARANGTVYGPLHGIPILIKNNIATDdKMNNTAGSYALLGAKVPRDSTIAAKLRKAGAIILGK 162
                 689***************.******************************************9779********************************** PP

                 E--SGGG-SSSSTT-TT.....---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEE CS
     Amidase  99 Tnmdefamgsstensvf.....gptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGp 192
                 Tn++++a   s ++s       g+t+  +++   p GSS+Gs++a + gl+++a+Gt+t GSi  P+ +++lvG+KP++g+ Sr+ v++++  +d+vGp
  KKY18807.1 163 TNLSQWANYRSDNTSNGwsaygGQTEAAYYPGQDPSGSSSGSGVASSLGLALAALGTETDGSILSPSNVNNLVGIKPSVGLTSRYLVIPISEHQDTVGP 261
                 ******9876544443335677***************************************************************************** PP

                 EESSHHHHHHHHHHHBS--TT-TTS----..HHHHHHHHCTT---TT-EEEEEGGGC...SS---CCHHHHHHHHHHHHHCTT-EEE.EEE-CCGGGHH CS
     Amidase 193 larsvedlalllrvilgedpkdstssvip..eesedlaeelkkslkglriGvvkedg...vasldpevqravekalkaLeeaGhevv.evelpsleeal 285
                 +ar+v+d+a++l++i g+dp d  +s ip  +    + +  + +l+g+riGv++++     +s   ++  ++++al+ L++aG++vv  ++lp  e+++
  KKY18807.1 262 MARTVKDAAYVLSAITGKDPYDNYTSAIPfnKTPDYVGACDYFALRGKRIGVPRNLIdlgDDSTASPIIPVFNSALDVLRSAGATVVdNITLPGYERLA 360
                 ******************************6555667788999***********9987778899999****************6665168999999999 PP

                 H.HHHHHHH.HHHHHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCC.HHHHHHHHHHHHHHHHHHCCC.....BSE CS
     Amidase 286 s.lyylilv.aeassnlarylgvryerlsetkvlsellpksraellgeevkrrielgnyalsaeassky.ylkaqkvrrllrrefakafee.....lDv 376
                    y +i++ a++ s l +yl+   +++++  +ls+l   + + +l++  +r  e ++ als ++ ++  + +   + +l+     +++       lD+
  KKY18807.1 361 TgDYSNIVLeADFVSDLHNYLTSLTYNPYNITTLSQLQDFTQSFPLESFPTRDTEVWTSALSLNYNNTSpLFWTNYTTALYLAGPLGILGGlrnhsLDA 459
                 998888877367788888888887799999999999999999999999999999999999999998888444444444599999888887788899*** PP

                 EEEESSSSS--BCCCCCHHHCSHHHHHGCCTTT...HHHHHTT--EEEEECCCCT.TECEEEEEEESTT-HHHH CS
     Amidase 377 llsPtaptpaprlgekdktidsytvlynlldftavvvpvnlaglpalsvpagksedglPvGvqvigkafqeetl 450
                 l++Pt  +p  +         s+     l +++   +  ++++++     ++ ++ ++P G+ +++++f+ee+l
  KKY18807.1 460 LVVPTDFSPFLPALI-----GSPVITVPLGKYP---ANTTVVKNNF--GNLNATAPNVPFGISFMAERFSEEKL 523
                 ****86655444222.....3455556666666...3334444444..455556679**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.49
# Mc/sec: 3418.55
//
Query:       KKY18808.1  [L=375]
Description: putative ribosome biogenesis [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-32  111.5   0.0    7.2e-32  111.1   0.0    1.2  1  Brix      Brix domain


Domain annotation for each model (and alignments):
>> Brix  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   0.0     4e-36   7.2e-32       2     191 ..      43     244 ..      42     246 .. 0.87

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 4e-36
                 TT--HHHHHHHHHHHHHCTTSEEEEEEECT..-TTTHHHHHHH-HHHHHHHHHCTCSEEEEEE..S.STTE............EEEEEEEECECTGGGS CS
        Brix   2 rktssrlrqllkdlrslmkphtasflkrns..nklkdlvelagvthlellsekndcslfvfelskk.rPng............ptlefkvenyslmkdl 85 
                 ++++ +l+ +lk + sl kph++  +k+n+  ++++       +++le+l+ kndc+l+vf+ s+k rPn             +++e+ ++  +     
  KKY18808.1  43 TRCPDQLNAVLKTVASLAKPHAVLLHKKNEniHPFET------AESLEFLAGKNDCGLVVFGNSSKkRPNAvtitrifdgktlDMCELLLLPPTDGAVQ 135
                 678889******************99976668*****......99*************************999******************65555554 PP

                 TTTS.TS-TT---EEEEES............HHHHHHHHHHHHHH..SEEEG..-B-GG-SEEEEEEES.CCTT.T.ECEEEEEEEEEEE..STTTTEC CS
        Brix  86 kkak.ktefgsrPllvfng...........kenfkllksllqdlFrvpkislkspklsglrrvvlftaaenqet.d.ktisfRhYaiklkksgkklpnl 170
                 + ++ ++ ++++P+++f+g           +++f+++ksll+d+F+ ++i  k+++ +gl++++++ a e  e+ + + i++R+Y++++kksg+klp  
  KKY18808.1 136 PARAfQVGVEMKPMILFAGnvwddtsateqSTKFTMIKSLLLDVFQGEEI--KTIDVEGLQYLMMIAAPE-PEAgQePIINVRWYKVRTKKSGQKLP-- 229
                 44446899****************9999988899***********74444..557779*********865.23333479******************.. PP

                 T..T..EEEEEEESEEEEEEE CS
        Brix 171 ekekkerveLeEiGPrfdLkl 191
                       rve++EiGP+fd++ 
  KKY18808.1 230 ------RVEVDEIGPKFDFRA 244
                 ......*************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2587.36
//
Query:       KKY18809.1  [L=80]
Description: putative peroxisomal membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.31s 00:00:00.75 Elapsed: 00:00:00.49
# Mc/sec: 491.81
//
Query:       KKY18810.1  [L=1064]
Description: putative c2h2 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-32  113.3  21.0    1.2e-32  113.3  21.0    2.0  2  MFS_1        Major Facilitator Superfamily
    1.9e-24   84.7  51.3     0.0031   17.9   0.1    9.9 10  zf-C2H2      Zinc finger, C2H2 type
      1e-13   50.8  55.5      0.004   17.9   1.0    9.2  8  zf-C2H2_4    C2H2-type zinc finger
    4.8e-13   48.8   9.1      1e-12   47.7   9.1    1.5  1  Sugar_tr     Sugar (and other) transporter
      1e-05   25.7  49.5     0.0015   18.8   0.3    9.3 10  zf-H2C2_2    Zinc-finger double domain
    0.00084   19.9  32.5       0.18   12.5   0.1    8.1  8  FOXP-CC      FOXP coiled-coil domain
     0.0018   18.5  27.0       0.49   10.7   0.0    8.0  8  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
     0.0043   16.8   0.9     0.0043   16.8   0.9    2.3  2  GAGA         GAGA factor
  ------ inclusion threshold ------
      0.021   14.6  32.3      0.046   13.5   0.5    7.3  7  zf-H2C2_5    C2H2-type zinc-finger domain
      0.067   13.0   0.1      0.067   13.0   0.1    4.7  5  zf-C2H2_11   zinc-finger C2H2-type
      0.075   11.4   6.4       0.12   10.8   6.4    1.2  1  TRI12        Fungal trichothecene efflux pump (TRI12)
       0.28   11.1   1.9        2.9    7.9   0.0    3.4  3  zf-C2HC_2    zinc-finger of a C2HC-type
       0.44   10.9  25.3        1.4    9.2   3.7    4.9  5  zf-C2H2_8    C2H2-type zinc ribbon


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3  21.0   8.6e-36   1.2e-32       5     326 ..      53     501 ..      47     528 .. 0.81
   2 ?   -1.2   1.4      0.54   7.4e+02     221     276 ..     520     576 ..     499     592 .. 0.58

  Alignments for each domain:
  == domain 1  score: 113.3 bits;  conditional E-value: 8.6e-36
       MFS_1   5 aflsalarsilgpalpl.alaedlg........ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrv 93 
                 + + ++++ ++gpa+ +  +a d+g        ++  ++++ +t  al+++v++l++++l++ +G+r++++++++++++++++  + ++++   lv+r+
  KKY18810.1  53 FGMLMTTFLAAGPAVAIvQIAMDFGsgpstnlaVAIPQVSFFFTSSALVQGVGNLLWMPLIQIYGARPIYIISFTAYLITAVWSGI-ATSFgSELVARL 150
                 23333333334555555566667774444444477777******************************************555555.66666******* PP

       MFS_1  94 lqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.... 188
                 l G+++ga+  +g   i+d+f   +r+++++l++ +++ G+ +g +++g+++  ++Wr+++++  +++  +++l+++ lpe+  +rk + ++++     
  KKY18810.1 151 LLGFFSGAGECLGPRTISDIFFLHQRASVMALYNFAVATGIPIGIVVSGAITLKYSWRVIYLVGSVLLGALVILIIFTLPETSFNRKDVDDVQDVendn 249
                 ***********************************************************************9**99***9999999999999999**** PP

       MFS_1 189 ................................................................................................... 188
                                                                                                                    
  KKY18810.1 250 ptkedqlfgrednpyrlslsivlndqekarvaeyyqetdmmqelgisnesqviqrmearirrlemtmwsqprydqlgpsflrkksywstlrlfsgekyt 348
                 *************************************************************************99999999999888888888887555 PP

       MFS_1 189 kgtgpaplvp...awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr.............l 271
                 k  +++       ++++++ +pv w+ +++++l+++ +++ +++   +  +++ +s  +++g l  l+alvg ila+ ag  +                
  KKY18810.1 349 KESFWT---MfvrPFGLIFLPPVTWATFAMAVLIGLNVAISSVFANDF-GSTYQFS-TFESG-LCFLGALVGGILAIPAGGPVSEavanfftrrnrgfR 441
                 444444...35559***********99999999999999999999**8.*******.56666.566667776666444444443336666777687777 PP

       MFS_1 272 grrrrlllallllllaalglallavtssavllll....vlvliGf.glgfvfpsllalas 326
                  +++rl  ++++ll+a +gl+l ++   + l+ +    +l l++f ++  +++sl + ++
  KKY18810.1 442 EPEFRLPAMVIALLTAPAGLFLYGFGIQQKLHFMvpvlGLSLLSFaTSQSINVSLVYTLD 501
                 77************************4444444412223333444333333555555444 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.54
       MFS_1 221 fgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr.lgrrrr 276
                 ++ +g+++ + +++q+  +l ++ +++++  ++ +++a+l++ ++ l  r l+++  
  KKY18810.1 520 LIGFGISSGTNIWIQKAGHLVAFSEMAIMAFVVLALAAPLFFYGASLRSRsLNWKVV 576
                 344444444444433333333555555556666666666666666666443555444 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.45   6.2e+02       9      20 ..     596     607 ..     594     609 .. 0.84
   2 !   12.7   2.3    0.0001      0.14       2      23 .]     607     630 ..     606     630 .. 0.93
   3 !   12.0   2.4   0.00017      0.23       1      23 []     636     661 ..     636     661 .. 0.97
   4 !   12.4   0.1   0.00012      0.17       1      23 []     667     691 ..     667     691 .. 0.96
   5 !   13.9   1.4   4.2e-05     0.058       1      23 []     697     723 ..     697     723 .. 0.96
   6 !   10.1   0.1   0.00065      0.89       3      23 .]     731     760 ..     729     760 .. 0.80
   7 ?   -1.5   0.0       3.3   4.5e+03      13      23 .]     798     809 ..     796     809 .. 0.81
   8 !   17.5   1.4   2.9e-06    0.0041       2      23 .]     812     834 ..     812     834 .. 0.93
   9 !   16.4   1.2   6.9e-06    0.0095       1      23 []     849     874 ..     849     874 .. 0.94
  10 !   17.9   0.1   2.2e-06    0.0031       6      23 .]     905     923 ..     903     923 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.45
                 EESSHHHHHHHH CS
     zf-C2H2   9 sFkrksnLkrHi 20 
                 + +r+s+Lk+H 
  KKY18810.1 596 RTPRPSELKVHH 607
                 5789*******7 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.0001
                 EET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   2 kCp..dCgksFkrksnLkrHirtH 23 
                  C   +C+ksF+r s L  H r+H
  KKY18810.1 607 HCQyeGCTKSFNRLSRLAEHERSH 630
                 69999*****************99 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00017
                 EEET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                 +kC   +C+k F r s+Lk+H ++ H
  KKY18810.1 636 FKCQedGCDKDFLRESHLKHHVKSaH 661
                 89*********************999 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 0.00012
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 y+C+  +C+k+F +   L+rH+  H
  KKY18810.1 667 YVCNwdGCDKKFATGTRLRRHLAAH 691
                 99*******************9887 PP

  == domain 5  score: 13.9 bits;  conditional E-value: 4.2e-05
                 EEET...TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCp...dCgksFkrksnLkrHirt.H 23 
                 y+C    +C+++F+    L+rHi + H
  KKY18810.1 697 YRCRgyeGCNETFRKHVTLTRHILSvH 723
                 89*********************9988 PP

  == domain 6  score: 10.1 bits;  conditional E-value: 0.00065
                 ET........TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   3 Cp........dCgksFkrksnLkrHirt.H 23 
                 Cp         C + F + + L++H+r  H
  KKY18810.1 731 CPendtktgeNCQMAFDTAEKLRAHQRAqH 760
                 55555555568****************888 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 3.3
                 HHHHHHHHHC.C CS
     zf-C2H2  13 ksnLkrHirt.H 23 
                   +L++Hi   H
  KKY18810.1 798 YALLQAHIAEfH 809
                 578*****9888 PP

  == domain 8  score: 17.5 bits;  conditional E-value: 2.9e-06
                 EETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                 +Cp C+k+++++ +L+rHi   H
  KKY18810.1 812 TCPQCSKVCSTQRELRRHIEGvH 834
                 7******************8777 PP

  == domain 9  score: 16.4 bits;  conditional E-value: 6.9e-06
                 EEET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                 ++C+  +C ksF+ +snL++H +t H
  KKY18810.1 849 HPCTypGCAKSFSKRSNLNTHVNTvH 874
                 679999*****************999 PP

  == domain 10  score: 17.9 bits;  conditional E-value: 2.2e-06
                 TTEEESSHHHHHHHHHC.C CS
     zf-C2H2   6 CgksFkrksnLkrHirt.H 23 
                 Cg+sF++ks+L+ H rt H
  KKY18810.1 905 CGRSFTSKSSLEEHVRTaH 923
                 *****************99 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   2.8    0.0091        13       2      23 ..     607     630 ..     606     631 .. 0.92
   2 !    9.9   2.5     0.001       1.4       1      24 []     636     661 ..     636     661 .. 0.95
   3 !   11.4   0.1   0.00034      0.47       1      23 [.     667     691 ..     667     692 .. 0.92
   4 !    8.2   0.9    0.0038       5.2       2      24 .]     698     723 ..     697     723 .. 0.85
   5 ?    6.5   0.0     0.013        19       6      24 .]     742     760 ..     729     760 .. 0.89
   6 !   17.9   1.0   2.9e-06     0.004       2      24 .]     812     834 ..     811     834 .. 0.95
   7 !   12.4   0.9   0.00016      0.22       1      24 []     849     874 ..     849     874 .. 0.93
   8 !   12.3   0.2   0.00017      0.24       5      24 .]     904     923 ..     903     923 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0091
   zf-C2H2_4   2 kCpi..CgksFsskkaLlrHlkth 23 
                  C +  C+ksF++ ++L  H ++h
  KKY18810.1 607 HCQYegCTKSFNRLSRLAEHERSH 630
                 799999****************99 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.001
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkthH 24 
                 fkC    C+k F + ++L++H+k+ H
  KKY18810.1 636 FKCQEdgCDKDFLRESHLKHHVKSAH 661
                 8999999****************988 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.00034
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkth 23 
                 + C +  C+k F + ++L+rHl++h
  KKY18810.1 667 YVCNWdgCDKKFATGTRLRRHLAAH 691
                 6788888****************99 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0038
   zf-C2H2_4   2 kCpi...CgksFsskkaLlrHlkthH 24 
                 +C+    C+++F+ + +L rH++++H
  KKY18810.1 698 RCRGyegCNETFRKHVTLTRHILSVH 723
                 5666666*****************99 PP

  == domain 5  score: 6.5 bits;  conditional E-value: 0.013
   zf-C2H2_4   6 CgksFsskkaLlrHlkthH 24 
                 C+  F + ++L+ H +++H
  KKY18810.1 742 CQMAFDTAEKLRAHQRAQH 760
                 *****************99 PP

  == domain 6  score: 17.9 bits;  conditional E-value: 2.9e-06
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkthH 24 
                 +Cp+C+k++s++++L+rH++ +H
  KKY18810.1 812 TCPQCSKVCSTQRELRRHIEGVH 834
                 6******************9988 PP

  == domain 7  score: 12.4 bits;  conditional E-value: 0.00016
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkthH 24 
                 ++C++  C ksFs +++L++H++t+H
  KKY18810.1 849 HPCTYpgCAKSFSKRSNLNTHVNTVH 874
                 5899999*****99999********9 PP

  == domain 8  score: 12.3 bits;  conditional E-value: 0.00017
   zf-C2H2_4   5 iCgksFsskkaLlrHlkthH 24 
                  Cg+sF+sk++L  H++t H
  KKY18810.1 904 SCGRSFTSKSSLEEHVRTAH 923
                 6****************988 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   9.1   7.5e-16     1e-12      23     194 ..      67     232 ..      46     254 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 7.5e-16
                 HHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHH CS
    Sugar_tr  23 ltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasv 121
                 +++ + a++fg   s++    +  ++++++ +  +++ +G l+ ++l++++G +++++i+ + ++i av +++a+   s+   +v+R+l+G++ G+  +
  KKY18810.1  67 VAIVQIAMDFGSGPSTNLAV-AIPQVSFFFTSSALVQGVGNLLWMPLIQIYGARPIYIISFTAYLITAVWSGIAT---SFGSELVARLLLGFFSGAGEC 161
                 33344445555555554333.467999999999999***************************************...********************* PP

                 HHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHH.HHHHHHHHGGGS--- CS
    Sugar_tr 122 lvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlv.pallllilllflPES 194
                 l P +is i   + R  ++ ly++a+++Gi +++++  ++    +   wr+   + +v +  l+++++++lPE+
  KKY18810.1 162 LGPRTISDIFFLHQRASVMALYNFAVATGIPIGIVVSGAITLKYS---WRVIYLVGSVlLGALVILIIFTLPET 232
                 *********************************998877766555...7776555444145588888899***9 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2       2.7   3.7e+03      15      25 ..     606     618 ..     597     619 .. 0.74
   2 !   18.8   0.3   1.1e-06    0.0015       2      25 ..     623     648 ..     622     649 .. 0.89
   3 !    9.7   1.1   0.00084       1.2       1      26 []     652     680 ..     652     680 .. 0.94
   4 ?    5.8   0.7     0.015        21       2      24 ..     684     709 ..     683     711 .. 0.88
   5 !    8.9   0.1    0.0015       2.1       2      18 ..     715     732 ..     714     748 .. 0.83
   6 !    6.8   0.2    0.0071       9.7       2      20 ..     752     770 ..     751     772 .. 0.91
   7 !    6.4   0.7    0.0093        13       2      25 ..     801     821 ..     801     822 .. 0.77
   8 ?    1.0   0.6      0.48   6.6e+02       2      25 ..     826     861 ..     825     862 .. 0.51
   9 ?   -1.3   0.1       2.7   3.7e+03       1      13 [.     865     878 ..     865     882 .. 0.77
  10 ?   -1.8   0.1       3.8   5.2e+03       1      11 [.     914     925 ..     914     926 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.7
   zf-H2C2_2  15 yeCp..lCdkaFk 25 
                 ++C    C k+F+
  KKY18810.1 606 HHCQyeGCTKSFN 618
                 778764599*997 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1.1e-06
   zf-H2C2_2   2 LrrHirkHtgekpyeCp..lCdkaFk 25 
                 L  H r+Htge++++C    Cdk F 
  KKY18810.1 623 LAEHERSHTGERKFKCQedGCDKDFL 648
                 678**************877***996 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00084
   zf-H2C2_2   1 nLrrHirk.HtgekpyeCp..lCdkaFkt 26 
                 +L+ H ++ Ht+ + y C    Cdk+F+t
  KKY18810.1 652 HLKHHVKSaHTNIRDYVCNwdGCDKKFAT 680
                 6999****************99*****86 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.015
   zf-H2C2_2   2 LrrHirkHtgekpyeCp...lCdkaF 24 
                 LrrH++ H g  +y C     C+ +F
  KKY18810.1 684 LRRHLAAHEGREKYRCRgyeGCNETF 709
                 9***************9886688888 PP

  == domain 5  score: 8.9 bits;  conditional E-value: 0.0015
   zf-H2C2_2   2 LrrHir.kHtgekpyeCp 18 
                 L+rHi  +H g k + Cp
  KKY18810.1 715 LTRHILsVHEGRKAFPCP 732
                 89**9736*********9 PP

  == domain 6  score: 6.8 bits;  conditional E-value: 0.0071
   zf-H2C2_2   2 LrrHirkHtgekpyeCplC 20 
                 Lr H+r  + ++++ C+lC
  KKY18810.1 752 LRAHQRAQHDPTRFSCSLC 770
                 99****98889******** PP

  == domain 7  score: 6.4 bits;  conditional E-value: 0.0093
   zf-H2C2_2   2 LrrHirk.HtgekpyeCplCdkaFk 25 
                 L+ Hi++ H++    +Cp C+k+ +
  KKY18810.1 801 LQAHIAEfHPP----TCPQCSKVCS 821
                 78999983555....8*****9865 PP

  == domain 8  score: 1.0 bits;  conditional E-value: 0.48
   zf-H2C2_2   2 LrrHir.kHt...........gekpyeCp..lCdkaFk 25 
                 LrrHi  +H            g   + C    C+k+F+
  KKY18810.1 826 LRRHIEgVHGtlpneegsimvG--SHPCTypGCAKSFS 861
                 7888752455555433333222..24444337999997 PP

  == domain 9  score: -1.3 bits;  conditional E-value: 2.7
   zf-H2C2_2   1 nLrrHirk.Htgek 13 
                 nL+ H  + H+g +
  KKY18810.1 865 NLNTHVNTvHKGRR 878
                 899**995599976 PP

  == domain 10  score: -1.8 bits;  conditional E-value: 3.8
   zf-H2C2_2   1 nLrrHirk.Htg 11 
                 +L+ H r+ H+g
  KKY18810.1 914 SLEEHVRTaHMG 925
                 5899***99987 PP

>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.4      0.19   2.6e+02       5      32 ..     606     632 ..     603     640 .. 0.78
   2 ?    2.4   0.9      0.17   2.4e+02       7      31 ..     638     662 ..     634     668 .. 0.89
   3 !   10.6   0.1   0.00048      0.66       6      28 ..     668     690 ..     664     701 .. 0.84
   4 ?    1.5   0.1      0.34   4.6e+02      11      31 ..     704     724 ..     695     728 .. 0.90
   5 ?    2.5   0.3      0.17   2.4e+02      11      34 ..     741     764 ..     740     777 .. 0.89
   6 ?    5.6   0.2     0.018        24      10      31 ..     814     835 ..     810     843 .. 0.91
   7 !   12.5   0.1   0.00013      0.18       5      31 ..     849     875 ..     845     882 .. 0.90
   8 ?    0.5   0.1       0.7   9.6e+02      12      31 ..     905     924 ..     904     942 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.19
     FOXP-CC   5 gvCkWPgCekvledveeflkhlnseHal 32 
                  +C+  gC k ++ ++++ +h + +H+ 
  KKY18810.1 606 HHCQYEGCTKSFNRLSRLAEHER-SHTG 632
                 57******************954.4554 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.17
     FOXP-CC   7 CkWPgCekvledveeflkhlnseHa 31 
                 C+  gC+k +   +++ +h++s+H+
  KKY18810.1 638 CQEDGCDKDFLRESHLKHHVKSAHT 662
                 77779*******************7 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00048
     FOXP-CC   6 vCkWPgCekvledveeflkhlns 28 
                 vC+W gC+k + + +++ +hl  
  KKY18810.1 668 VCNWDGCDKKFATGTRLRRHLAA 690
                 8*******************975 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.34
     FOXP-CC  11 gCekvledveeflkhlnseHa 31 
                 gC++ + ++ ++++h+ s H+
  KKY18810.1 704 GCNETFRKHVTLTRHILSVHE 724
                 9***************99997 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.17
     FOXP-CC  11 gCekvledveeflkhlnseHaldd 34 
                 +C+ +++++e++ +h + +H+++ 
  KKY18810.1 741 NCQMAFDTAEKLRAHQRAQHDPTR 764
                 8*******************9986 PP

  == domain 6  score: 5.6 bits;  conditional E-value: 0.018
     FOXP-CC  10 PgCekvledveeflkhlnseHa 31 
                 P C+kv++++ e+ +h++  H 
  KKY18810.1 814 PQCSKVCSTQRELRRHIEGVHG 835
                 9****************99996 PP

  == domain 7  score: 12.5 bits;  conditional E-value: 0.00013
     FOXP-CC   5 gvCkWPgCekvledveeflkhlnseHa 31 
                   C  PgC k +++ +++  h+n+ H+
  KKY18810.1 849 HPCTYPGCAKSFSKRSNLNTHVNTVHK 875
                 56************************8 PP

  == domain 8  score: 0.5 bits;  conditional E-value: 0.7
     FOXP-CC  12 CekvledveeflkhlnseHa 31 
                 C + +++ +++ +h++++H 
  KKY18810.1 905 CGRSFTSKSSLEEHVRTAHM 924
                 9999**************95 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2       1.2   1.7e+03       7      24 ..     613     630 ..     613     630 .. 0.91
   2 ?    2.9   2.6       0.1   1.4e+02       7      23 ..     643     659 ..     635     661 .. 0.93
   3 ?    1.2   0.0      0.35   4.8e+02       7      21 ..     674     688 ..     674     689 .. 0.91
   4 ?    1.7   0.1      0.25   3.5e+02       7      23 ..     705     721 ..     705     723 .. 0.94
   5 ?    1.3   0.1      0.32   4.4e+02       7      22 ..     742     757 ..     740     757 .. 0.91
   6 !   10.7   0.0   0.00035      0.49       3      22 ..     812     831 ..     810     833 .. 0.91
   7 ?    6.1   0.8      0.01        14       7      23 ..     856     872 ..     856     875 .. 0.92
   8 ?    5.2   0.0      0.02        28       7      23 ..     905     921 ..     903     922 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.2
                  TTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   7 CdKyFksenaldnHlkSK 24 
                  C K F+  + l +H++S+
   KKY18810.1 613 CTKSFNRLSRLAEHERSH 630
                  7799999999******97 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.1
                  TTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   7 CdKyFksenaldnHlkS 23 
                  CdK F  e+ l+ H+kS
   KKY18810.1 643 CDKDFLRESHLKHHVKS 659
                  ****************9 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.35
                  TTBBBSSHHHHHCCT CS
  zf-C2H2_jaz   7 CdKyFksenaldnHl 21 
                  CdK F +   l+ Hl
   KKY18810.1 674 CDKKFATGTRLRRHL 688
                  *******99999997 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.25
                  TTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   7 CdKyFksenaldnHlkS 23 
                  C+ +F ++ +l  H+ S
   KKY18810.1 705 CNETFRKHVTLTRHILS 721
                  9*************977 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.32
                  TTBBBSSHHHHHCCTT CS
  zf-C2H2_jaz   7 CdKyFksenaldnHlk 22 
                  C+  F +++ l++H++
   KKY18810.1 742 CQMAFDTAEKLRAHQR 757
                  **************86 PP

  == domain 6  score: 10.7 bits;  conditional E-value: 0.00035
                  BBTTTTBBBSSHHHHHCCTT CS
  zf-C2H2_jaz   3 YCvlCdKyFksenaldnHlk 22 
                   C+ C+K +++++ l+ H+ 
   KKY18810.1 812 TCPQCSKVCSTQRELRRHIE 831
                  5*****************96 PP

  == domain 7  score: 6.1 bits;  conditional E-value: 0.01
                  TTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   7 CdKyFksenaldnHlkS 23 
                  C+K F++ ++l +H+++
   KKY18810.1 856 CAKSFSKRSNLNTHVNT 872
                  ***************98 PP

  == domain 8  score: 5.2 bits;  conditional E-value: 0.02
                  TTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   7 CdKyFksenaldnHlkS 23 
                  C + F s ++l++H+++
   KKY18810.1 905 CGRSFTSKSSLEEHVRT 921
                  **************986 PP

>> GAGA  GAGA factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.9   3.1e-06    0.0043      24      48 ..     810     834 ..     806     839 .. 0.90
   2 ?   -3.9   0.1       9.1   1.3e+04      24      45 ..     850     871 ..     849     874 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.1e-06
                 -EE-TTT--EESSHHHHHHHHHHHT CS
        GAGA  24 PAtCPiCqAviRqsRnLRRHLELRH 48 
                 P tCP C  v    R LRRH+E  H
  KKY18810.1 810 PPTCPQCSKVCSTQRELRRHIEGVH 834
                 99*******************9777 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 9.1
                 -EE-TTT--EESSHHHHHHHHH CS
        GAGA  24 PAtCPiCqAviRqsRnLRRHLE 45 
                 P t P C     +  nL  H++
  KKY18810.1 850 PCTYPGCAKSFSKRSNLNTHVN 871
                 8899999888888888888876 PP

>> zf-H2C2_5  C2H2-type zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       4.3     6e+03       6      13 ..     581     588 ..     581     588 .. 0.86
   2 ?   -1.2   3.4       1.3   1.8e+03      14      25 ..     651     662 ..     649     663 .. 0.86
   3 ?    2.1   0.0      0.12   1.6e+02      15      26 .]     683     693 ..     674     693 .. 0.86
   4 ?    4.9   0.1     0.016        22      15      26 .]     714     725 ..     713     725 .. 0.93
   5 ?   13.5   0.5   3.3e-05     0.046       3      25 ..     813     835 ..     812     836 .. 0.95
   6 ?    5.4   1.0     0.011        15      12      26 .]     862     876 ..     861     876 .. 0.91
   7 ?    6.8   0.0    0.0041       5.7      11      25 ..     910     924 ..     908     925 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.3
   zf-H2C2_5   6 CDYstawk 13 
                 CD+ ++++
  KKY18810.1 581 CDFGSTTP 588
                 ***99985 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.3
   zf-H2C2_5  14 snLkRHlrrkHt 25 
                 s Lk+H++  Ht
  KKY18810.1 651 SHLKHHVKSAHT 662
                 67******9998 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.12
   zf-H2C2_5  15 nLkRHlrrkHtg 26 
                  L+RHl+  H+g
  KKY18810.1 683 RLRRHLA-AHEG 693
                 59*****.9987 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.016
   zf-H2C2_5  15 nLkRHlrrkHtg 26 
                 +L+RH++ +H+g
  KKY18810.1 714 TLTRHILSVHEG 725
                 79********97 PP

  == domain 5  score: 13.5 bits;  conditional E-value: 3.3e-05
   zf-H2C2_5   3 CsqCDYstawksnLkRHlrrkHt 25 
                 C+qC+ + ++ ++L+RH++ +H 
  KKY18810.1 813 CPQCSKVCSTQRELRRHIEGVHG 835
                 *******************9996 PP

  == domain 6  score: 5.4 bits;  conditional E-value: 0.011
   zf-H2C2_5  12 wksnLkRHlrrkHtg 26 
                  +snL+ H+ ++H+g
  KKY18810.1 862 KRSNLNTHVNTVHKG 876
                 589**********98 PP

  == domain 7  score: 6.8 bits;  conditional E-value: 0.0041
   zf-H2C2_5  11 awksnLkRHlrrkHt 25 
                 ++ks+L++H+r+ H 
  KKY18810.1 910 TSKSSLEEHVRTAHM 924
                 579********9996 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.21   2.9e+02      10      24 ..     674     688 ..     672     689 .. 0.91
   2 ?   -1.3   0.2       1.4     2e+03      17      28 ..     712     723 ..     703     723 .. 0.79
   3 ?    0.4   0.7       0.4   5.5e+02       7      28 ..     813     834 ..     811     834 .. 0.77
   4 ?   -0.2   0.4      0.62   8.5e+02      10      29 .]     856     875 ..     848     875 .. 0.85
   5 ?   13.0   0.1   4.9e-05     0.067       9      28 ..     904     923 ..     903     923 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.21
  zf-C2H2_11  10 CGlcftSqlsLsRHl 24 
                 C  +f+    L+RHl
  KKY18810.1 674 CDKKFATGTRLRRHL 688
                 88999*********8 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.4
  zf-C2H2_11  17 qlsLsRHlfIvH 28 
                 ++ L RH   vH
  KKY18810.1 712 HVTLTRHILSVH 723
                 7889***99888 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.4
  zf-C2H2_11   7 CleCGlcftSqlsLsRHlfIvH 28 
                 C +C    + q  L+RH   vH
  KKY18810.1 813 CPQCSKVCSTQRELRRHIEGVH 834
                 7888655588999****87777 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.62
  zf-C2H2_11  10 CGlcftSqlsLsRHlfIvHK 29 
                 C   f+    L+ H   vHK
  KKY18810.1 856 CAKSFSKRSNLNTHVNTVHK 875
                 6667888888*********9 PP

  == domain 5  score: 13.0 bits;  conditional E-value: 4.9e-05
  zf-C2H2_11   9 eCGlcftSqlsLsRHlfIvH 28 
                  CG+ ftS+ sL  H +  H
  KKY18810.1 904 SCGRSFTSKSSLEEHVRTAH 923
                 5**************99888 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   6.4   8.6e-05      0.12      80     224 ..      91     236 ..      44     250 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.6e-05
       TRI12  80 sslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpaga.splfvgelm..snktkflgllivsipv 175
                  s+f t  ++ q v  l+   l + +g rp+ i++    l+ a+    at f + l a  llg  +g   +  p  + +++   +++ ++ l   ++ +
  KKY18810.1  91 VSFFFTSSALVQGVGNLLWMPLIQIYGARPIYIISFTAYLITAVWSGIATSFGSELVARLLLGFFSGAGEClGPRTISDIFflHQRASVMALYNFAVAT 189
                 356777888899999999999******************************************998865433789999876114556666666555554 PP

       TRI12 176 vvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaq 224
                  +   ++  +   ++++ swr i+ +  ++    v+li+      sf++
  KKY18810.1 190 GI--PIGIVVSGAITLKYSWRVIYLVGSVLLGALVILIIFTLPETSFNR 236
                 43..4677889999********999988888777888877766677766 PP

>> zf-C2HC_2  zinc-finger of a C2HC-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.48   6.7e+02       7      22 ..     612     628 ..     611     629 .. 0.81
   2 ?   -2.9   0.1       5.1     7e+03       8      20 ..     674     687 ..     673     689 .. 0.60
   3 ?    7.9   0.0    0.0021       2.9       7      22 ..     904     920 ..     903     921 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.48
   zf-C2HC_2   7 kCgRsF.npdrlekHep 22 
                 +C  sF   +rl+ He+
  KKY18810.1 612 GCTKSFnRLSRLAEHER 628
                 5778888889*****98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.1
   zf-C2HC_2   8 CgRsFnpd.rlekH 20 
                 C  +F++  rl +H
  KKY18810.1 674 CDKKFATGtRLRRH 687
                 77888763256666 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0021
   zf-C2HC_2   7 kCgRsF.npdrlekHep 22 
                  CgRsF   ++le H++
  KKY18810.1 904 SCGRSFtSKSSLEEHVR 920
                 7*****9999****986 PP

>> zf-C2H2_8  C2H2-type zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.7     0.001       1.4      29      87 ..     599     656 ..     580     664 .. 0.73
   2 ?    4.7   2.3     0.026        36      19      89 ..     651     722 ..     648     732 .. 0.76
   3 ?    2.1   0.2      0.17   2.4e+02      41      73 ..     740     771 ..     727     778 .. 0.80
   4 ?    7.5   0.6    0.0037       5.1      11      71 ..     820     884 ..     810     892 .. 0.68
   5 ?   -1.5   0.1       2.4   3.3e+03       7      50 ..     905     952 ..     902     959 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.001
   zf-C2H2_8  29 qslegklfrcstascaetfpsmqelvahtklhykpnryfkcen..cllrfrthrslfkhlh 87 
                 + +e k+ +c    c+++f  +  l  h + h   +r fkc++  c   f    s +kh h
  KKY18810.1 599 RPSELKVHHCQYEGCTKSFNRLSRLAEHERSHT-GERKFKCQEdgCDKDFLRE-SHLKH-H 656
                 557889************************996.6899***642365555443.44444.3 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.026
   zf-C2H2_8  19 qhlrvhlsptqslegklfrcstascaetfpsmqelvahtklhykpnryfkc...encllrfrthrslfkhlhvc 89 
                 +hl+ h++  + ++ + + c    c + f +   l  h   h   ++y  c   e c   fr h +l +h+  +
  KKY18810.1 651 SHLKHHVKSAH-TNIRDYVCNWDGCDKKFATGTRLRRHLAAHEGREKYR-CrgyEGCNETFRKHVTLTRHILSV 722
                 56666665544.4557899*******************99999888774.433489*************97544 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.17
   zf-C2H2_8  41 ascaetfpsmqelvahtklhykpnryfkcencl 73 
                   c  +f + ++l ah + ++ p r f c  c+
  KKY18810.1 740 ENCQMAFDTAEKLRAHQRAQHDPTR-FSCSLCI 771
                 4688888888899999999888888.5677775 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0037
   zf-C2H2_8  11 fpnvrelaqhlr...vhlspt.qslegklfrcstascaetfpsmqelvahtklhykpnryfkcen 71 
                   + rel +h++    +l+ +  s+      c+ + ca++f    +l +h +  +k  r f c +
  KKY18810.1 820 CSTQRELRRHIEgvhGTLPNEeGSIMVGSHPCTYPGCAKSFSKRSNLNTHVNTVHKGRRAFICGE 884
                 45555555554410033333223445556679999**************************9976 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 2.4
   zf-C2H2_8   7 crlafpnvrelaqhlrvhlsptqsle....gklfrcstascaetfpsm 50 
                 c  +f +   l +h+r+     qs +     ++    tas+a t ps+
  KKY18810.1 905 CGRSFTSKSSLEEHVRTAHMGLQSRQverkQRKRAAETASVASTDPSI 952
                 666777777776666665554444320000222334567777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1064 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       984  (0.0548832); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.00u 0.37s 00:00:01.37 Elapsed: 00:00:00.58
# Mc/sec: 5497.98
//
Query:       KKY18811.1  [L=149]
Description: putative dna-directed rna polymerase and iii subunit rpb6 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-06   28.0   2.1    4.8e-05   23.2   1.5    2.5  2  RNA_pol_Rpb6  RNA polymerase Rpb6


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb6  RNA polymerase Rpb6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       0.5   9.1e+03      33      39 ..      13      19 ..       5      20 .. 0.74
   2 !   23.2   1.5   2.7e-09   4.8e-05       3      49 .]      87     129 ..      85     129 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.5
                  SSSSTTC CS
  RNA_pol_Rpb6 33 kpvviAl 39
                  +p ++Al
    KKY18811.1 13 DPPDDAL 19
                  9999998 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 2.7e-09
                   TTSS--HHHHHHHHHHHHHHH....HTS.S-SSSSTTCHHHHTT-S-- CS
  RNA_pol_Rpb6   3 tskvltrYelvriaakRArQieegesle.tqkpvviAlrEiaegkipi 49 
                   t++++t+Ye +r+  +  +        e +++p++iA++E+ ++kip+
    KKY18811.1  87 TTPYMTKYERARVMNAPVLVD----L-EgETDPLQIAIKELNQKKIPL 129
                   899******999998666543....2.5578***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.32s 00:00:00.84 Elapsed: 00:00:00.51
# Mc/sec: 871.30
//
Query:       KKY18812.1  [L=290]
Description: hypothetical protein UCRPC4_g04792 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2094.70
//
Query:       KKY18813.1  [L=1031]
Description: putative eukaryotic translation initiation factor 3 subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-08   34.0   0.0    3.4e-08   34.0   0.0    2.9  3  PCI       PCI domain


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.4     0.067   1.2e+03      28      84 ..     174     230 ..     165     237 .. 0.75
   2 !   34.0   0.0   1.9e-12   3.4e-08      26     104 ..     439     523 ..     398     524 .. 0.85
   3 ?   -4.2   0.5         1   1.8e+04      40      70 ..     650     680 ..     623     681 .. 0.63

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.067
                 HHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHHHHHH CS
         PCI  28 elladdglaqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvkl 84 
                 ++l+  +++  le  ++++ +++++ + k  ++ ++ rl +ll   v+++ k+++++
  KKY18813.1 174 TVLEILKNNARLEIMYQQTALQAFQFCLKHTRKTEFRRLCELLRNHVQNAAKYSSQM 230
                 455555666677778888888888777778888888888888888888888777776 PP

  == domain 2  score: 34.0 bits;  conditional E-value: 1.9e-12
                 HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSH......HHHHHHHHHHHHTTSSSEEEETTTTEEEEC CS
         PCI  26 eeelladdglaqllesLekkvrerllrqvskiyssislerlaklldlsv......devEkilvklIrdgeirakidqesgivvfk 104
                  +++  d+++++++  L++++ +rl++q+s+ y+s++l+ + +l ++++        +Ek++++  ++g ++ ++d++sg++ f 
  KKY18813.1 439 LSQIASDPEMEKYVIPLQQVILTRLFQQLSQVYESVDLQFVYNLAQFPSpyevtpAMIEKFIMNGCKKGDLAIRLDHVSGVITFD 523
                 467789999*************************************************************************996 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 1
                 HHHHHHHHHHHHHHHHHCESEEEHHHHHHHH CS
         PCI  40 esLekkvrerllrqvskiyssislerlakll 70 
                 ++L +++rer  +++ + + +i+ ++++k+l
  KKY18813.1 650 QRLIDETRERDRKRMQEEQARIRRQEMEKQL 680
                 4555666666666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1031 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2918  (0.162753); expected 358.6 (0.02)
Passed bias filter:                      627  (0.0349713); expected 358.6 (0.02)
Passed Vit filter:                       161  (0.00897987); expected 17.9 (0.001)
Passed Fwd filter:                        51  (0.00284455); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.66u 0.41s 00:00:02.06 Elapsed: 00:00:00.58
# Mc/sec: 5320.30
//
Query:       KKY18814.1  [L=91]
Description: putative g-protein complex gamma subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-21   76.5   0.1    1.3e-21   76.3   0.1    1.1  1  G-gamma   GGL domain


Domain annotation for each model (and alignments):
>> G-gamma  GGL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.1   7.5e-26   1.3e-21       2      68 .]      22      91 .]      21      91 .] 0.97

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 7.5e-26
     G-gamma  2 qlklklkrei.eqLkkeLkrerikvSkAceelidYvestkDpllpevwgppsageNpwiek..sgcCwil 68
                 lkl++++e+  +Lk++L+r+r +v +A+++li+Y+++t+D+++p++wg+++++e+p++++  +gcC+++
  KKY18814.1 22 DLKLRRLNELnIRLKEDLERPRTTVREASLSLIQYCNNTRDFMVPSIWGQVEKREDPYAPQqsGGCCTVM 91
                689*******9***************************************************9999*997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.30s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 608.63
//
Query:       KKY18815.1  [L=600]
Description: putative vacuolar amino acid transporter 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-84  282.7  22.7    4.8e-84  282.5  22.7    1.0  1  Aa_trans  Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.5  22.7   2.7e-88   4.8e-84       3     408 ..     201     592 ..     199     593 .. 0.96

  Alignments for each domain:
  == domain 1  score: 282.5 bits;  conditional E-value: 2.7e-88
    Aa_trans   3 ssalsavlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlgyrllGpkgkliidlailvqlfGvgvsy 101
                 +s+++++++l+ka+vG+G+++LP Af ++G++++ ++ll v+l++l++++lL++c+  +    +   Ygdlg+ +lGpk++ +i  +i+++++G++++ 
  KKY18815.1 201 ASTTKSFFTLLKAFVGTGIMFLPKAFNNGGILFSSMTLLTVSLVTLLAFHLLLECRSRY----GGGGYGDLGEIILGPKMRTVILGSITISQIGFVCAG 295
                 799*****************************************************855....899********************************* PP

    Aa_trans 102 liligdllpaifesffdt.lllsnvyfilisaliiipLslipnlskLsylSllalvsslyyivilvlvvaelvklelkgvseetvkkasklkglflaig 199
                 +++++++l +++  +++   ++s + +i+ + +++ipLs+i+n+skL+ ++lla+v++l+   +++++ +++ + ++ g+s+  v   ++ ++++l+ig
  KKY18815.1 296 TVFVAENLRSFLNAVLNGpGPISTNALIALQLIVLIPLSFIRNISKLGPAALLADVFILI--GLTYIYYFDIASISKSGISSTVV--LFNPSQYTLTIG 390
                 ****************999***************************************96..6999999999999*****99988..88889******* PP

    Aa_trans 200 iivFAftghavlleiqnelkdpskfkkmtkvlllsiilatvlyilvGlvGYltFGnevkgnillnlpkssilivivnlllvlhlilsfplqlhplrqvv 298
                  ++F+f+g+ ++l+iq ++ +p +f+    +l l+++l+t+++++vG ++Y+tFG +++ +++ n+p+++ l ++v++l+ l+++ ++p+ql+p+++++
  KKY18815.1 391 AAIFTFEGIGLILPIQSSMSHPHHFE---PLLCLVMLLITIIFTSVGALCYATFGIDTQIEVIANYPQNDRLVNAVQFLYSLAVLVGTPVQLFPAIRIL 486
                 **************************...6********************************************************************* PP

    Aa_trans 299 enllikkeavagasekeapkskllrlvirlllvvityliA.lsvpslakvlslvGatsstplsfilPalfhlkliktekksleklvkkkildlicivlg 396
                 e +l+        s+k++p +k+ ++ +r++lv +   i+ +  + l+++++l+G+++++pl++i+P+l+h++   +ek +   l   k+ dl+ iv g
  KKY18815.1 487 EGKLFGS----RLSGKRNPYIKWKKNAFRTILVGTCAGISiAGSQDLDRFVALIGSFACVPLVYIYPPLLHYRGVASEKGGKWGL-VAKAGDLVLIVAG 580
                 ****997....9****************************7789**********************************8555555.5679********* PP

    Aa_trans 397 lllvfyglavli 408
                 +l+++y+++v++
  KKY18815.1 581 VLAMAYTTIVTV 592
                 *********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 3726.61
//
Query:       KKY18816.1  [L=506]
Description: putative glycoside hydrolase family 51 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-25   88.4   0.0    9.4e-25   87.7   0.0    1.3  1  Alpha-L-AF_C  Alpha-L-arabinofuranosidase C-terminal domain


Domain annotation for each model (and alignments):
>> Alpha-L-AF_C  Alpha-L-arabinofuranosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   5.3e-29   9.4e-25       1     168 []     272     462 ..     272     462 .. 0.85

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 5.3e-29
                   EEEEE--S-..S..SS------HHHHHHHHHHHHHHHHHTTT--EEEES-SBSTT-.....SEEEETTE.EEE-HHHHHHHHHHHS--SEEEEEEEE CS
                   xxxxxxxxx..x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Alpha-L-AF_C   1 gEyavwyds..p..glleqqntledAlaeAafltglernaDvVkmasyAplvnviaatqWspdliwdngkvvgtpsYyvqklfsknaggtvlpvele 93 
                   +E++vw  +  p  +++e+ + ++d la+A++l+++ r+a+ + ma++A+ vnvia     p++++ +g vv++++Y+ + lfsk+++g+ l+++++
    KKY18816.1 272 DEWNVWDPVraPgdKGAEECYDVSDMLAVALWLNVFIRQAKWIGMATIAQSVNVIA-----PLMTTSEG-VVKQTIYWSLLLFSKYMRGQSLATHVR 362
                   9*****766763669*****************************************.....*****999.*************************** PP

                   --EEEEEEEET.............................SS--EEEEEEETT-.-SEEEEEEEE..E-.STT----SSSTTSSEEEEEEE.EE-E. CS
                   xxxxxxxxxxx.............................xxxxxxxxxxxxxxxxxxxxxxxxx..xx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Alpha-L-AF_C  94 spkyeikgege.............................aeeavevevdleglekaskaevtvl..sg.dlkaeNtfenpekvvpkeeklakvsgg 158
                   sp+y+  ++ e                             a+e   +e+ l  +     ++v v+   + ++ + N +   ekv+++e+k    +g 
    KKY18816.1 363 SPTYNGHTYPEwlsstmdlplldvsaalgdddymnlavvnASEHSAMETALPPI--EGPVQVFVVggDAtHIRDSN-IWGSEKVKIQESKW---QG- 452
                   ****666666688899999999999999999*****999966677888888877..56778888854336788888.55559999999988...33. PP

                   .EEEEE-TTE CS
                   xxxxxxxxxx RF
  Alpha-L-AF_C 159 kftytlpayS 168
                   + ++t++++S
    KKY18816.1 453 GDKFTFQKHS 462
                   2256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3712.72
//
Query:       KKY18817.1  [L=882]
Description: putative subtilisin-like protease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-42  146.2  11.0    1.2e-42  146.2  11.0    1.8  2  Peptidase_S8  Subtilase family
    2.5e-09   37.9   0.5    5.6e-09   36.7   0.5    1.7  1  fn3_5         Fn3-like domain
    9.5e-06   25.6   0.1    3.6e-05   23.7   0.0    2.1  2  PA            PA domain
  ------ inclusion threshold ------
       0.02   14.8   0.0      0.042   13.8   0.0    1.5  1  RPT           A repeated domain in UCH-protein
      0.036   13.9   0.3       0.42   10.5   0.1    2.7  2  FlgD_ig       FlgD Ig-like domain


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.2  11.0   3.4e-46   1.2e-42       1     285 [.     155     576 ..     155     589 .. 0.90
   2 ?   -1.9   0.1      0.45   1.6e+03     201     232 ..     756     783 ..     705     800 .. 0.69

  Alignments for each domain:
  == domain 1  score: 146.2 bits;  conditional E-value: 3.4e-46
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-S CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvl 97 
                   g+g+++a++DtG+d++   l   + +  k+ +  d  g    ++++++  +++  d ng    HGthvAGi+aa   +++++ gvap+++++ +kv+
    KKY18817.1 155 GSGIKIAIIDTGIDYTLSALGGGFGPGYKVAWGTDLVGD-DYDGTNTPVPDSDPIDCNG----HGTHVAGIIAAA--NDPYVLGVAPNVTLGIYKVF 244
                   79************************9999877776665.4555666666666666666....***********9..9******************* PP

                   STTSB-HH..HHHHHHHHHHHHCT-SEEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTST..TCEEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx RF
  Peptidase_S8  98 dtsggsmetgteliraieeaaedkvdvinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstsk..nvitvga 192
                   + sg+ +   + li a++ a + ++d+i  s+g+++ +p+   ++   a+ +a+   g+  + +aGN+g          +++t s s+   v++vg+
    KKY18817.1 245 GCSGSVSD--DILITAFTAAYNAGADIITASIGGANGWPEEP-WS---AATAAIVAAGTPCMLAAGNDG-------EEGMFYTSSASTgtDVTSVGS 328
                   77776654..89*********************999999877.54...566677699************.......5566777666665699***** PP

                   ES............................................................................................... CS
                   xx............................................................................................... RF
  Peptidase_S8 193 yt............................................................................................... 194
                   ++                                                                                               
    KKY18817.1 329 IDntnspevlysaeyivnnstssafgytpaigsfdsvslplwtdtydtaitddgcygfdadltgkivlirrgtctflakaqsaldagaqyvmfynnv 425
                   ************************************************************************************************* PP

                   ..........................................................TTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCH CS
                   ..........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 195 ..........................................................tegkiapfSsrGpssdgklkpdivapGgnivstwsrqsn 233
                                                                             t g +++fS+ G + +  lkp i+apGgni+st+   s 
    KKY18817.1 426 agtfeaslsgseitgagmvdsdtgatwvnllasgdevvlsfssntslivvspgdvnnvTGGYMSTFSTWGLTNENTLKPVISAPGGNILSTYLSSS- 521
                   ********************************************************************************************9999. PP

                   HHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT.--HHHHHHHHHCCS-EE........ CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx.......x RF
  Peptidase_S8 234 nsaglssyqsmsGTSmAsPnaagaaAlllsalpk.ltpetvraallntAqdl.......g 285
                         +y   sGTSmA+P++ag++Al ++ + k  +p  + aal  tA+++        
    KKY18817.1 522 -----GGYAVLSGTSMATPFIAGVVALYKQVNGKdVSPLVINAALSATATPVdfndgssT 576
                   .....3399*********************88888**************99876666552 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.45
                   TT--B-TT.......-EEEE-S-CCCCCCCCC CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 201 pfSsrGpssdgklkpdivapGgnivstwsrqs 232
                   +++s G+++    + d+  p +n+ + +s+++
    KKY18817.1 756 YYTS-GSNQT---NLDVYTPSTNSTPIYSWNN 783
                   3333.33332...5788888888877777776 PP

>> fn3_5  Fn3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.5   1.6e-12   5.6e-09       2     114 ..     609     723 ..     608     724 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.6e-12
       fn3_5   2 aLkeigdk.fsftltlkNtsnkaltykvsandvlTdladkeegklilkaaspeike...aaltfetskvtvpAnssktvtvtldlpsdakkkngyfveG 96 
                 aL++++++  +  + ++Nt++ +  y+++++++  ++a+  +   +l+a++p  ++   ++   ++s++ + ++s+++v++ ++++ +++ +  ++++G
  KKY18817.1 609 ALNDTAHFvSNASFYVENTGDDTIAYTLTHQPASNAYAFSSDDA-TLPATFPPPTDtlySTAVITPSSFSLTPGSKQKVNLLVTPNPALDSSLVPVYSG 706
                 7999999988999******************8888888766655.56777776656799999999********************************** PP

       fn3_5  97 fvtlkdsedknpelsvPY 114
                 +v+++ s++  +++++PY
  KKY18817.1 707 YVEVTASTGN-ESVHMPY 723
                 *********9.******* PP

>> PA  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       3.3   1.2e+04      47      59 ..     288     304 ..     288     326 .. 0.49
   2 !   23.7   0.0     1e-08   3.6e-05      20      59 ..     383     428 ..     365     452 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.3
          PA  47 Aagviiv.ndge....lg 59 
                 A ++i++   ++     g
  KKY18817.1 288 ATAAIVAaG-TPcmlaAG 304
                 667777742.22233211 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 1e-08
          PA  20 e...gvdvkGkivLvqr...tfaeKarnAqaaGAagviivndgelg 59 
                 +     d++GkivL++r   tf  Ka+ A +aGA  v ++n+ ++ 
  KKY18817.1 383 CygfDADLTGKIVLIRRgtcTFLAKAQSALDAGAQYVMFYNNVAGT 428
                 23445699*******99***********************755422 PP

>> RPT  A repeated domain in UCH-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.2e-05     0.042       6      29 ..     241     264 ..     241     273 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.2e-05
         RPT   6 yklLgidentdDdviitayqvkle 29 
                 yk++g++ +++Dd++ita++++++
  KKY18817.1 241 YKVFGCSGSVSDDILITAFTAAYN 264
                 99******************9986 PP

>> FlgD_ig  FlgD Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       0.3   1.1e+03      50      71 ..      14      35 ..      10      38 .. 0.87
   2 ?   10.5   0.1   0.00012      0.42      50      72 ..     831     853 ..     827     858 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.3
                EEEEE-SB-TTS-B--SEEEEE CS
     FlgD_ig 50 vsftWdGtdndGnkladGaYtv 71
                +++++dG ++   ++ +GaY v
  KKY18817.1 14 STLAFDGDTAGNGRVLAGAYIV 35
                57899*****999*******77 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00012
                 EEEEE-SB-TTS-B--SEEEEEE CS
     FlgD_ig  50 vsftWdGtdndGnkladGaYtvk 72 
                 +s+ W+G  +dG+ ++ GaY++ 
  KKY18817.1 831 QSVYWNGSLADGTTVQTGAYKLV 853
                 6899****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (882 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.37s 00:00:01.12 Elapsed: 00:00:00.57
# Mc/sec: 4695.13
//
Query:       KKY18818.1  [L=402]
Description: putative uracil dna glycosylase superfamily protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-16   61.1   0.0    7.7e-16   58.5   0.0    2.3  3  UDG            Uracil DNA glycosylase superfamily


Domain annotation for each model (and alignments):
>> UDG  Uracil DNA glycosylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1     0.082   1.5e+03     128     139 ..     125     138 ..      72     155 .. 0.69
   2 !   58.5   0.0   4.3e-20   7.7e-16       4     107 ..     169     279 ..     166     339 .. 0.82
   3 ?   -2.0   0.0      0.18   3.2e+03     123     154 ..     364     392 ..     346     393 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.082
                 EES-SSTTTTT..T CS
         UDG 128 plphPsplnrn..f 139
                  ++hP pl r+  +
  KKY18818.1 125 STSHPRPLKRRlpT 138
                 68899888888542 PP

  == domain 2  score: 58.5 bits;  conditional E-value: 4.3e-20
                 -CTT-SEEEEESSTCHHHHHHSSSS.-STT--HHHHHHHCCCCCCCHHG.........CTEEEEESSS....SECGCTTCCCCTCCHHHHHHHHHHHHS CS
         UDG   4 gppdakvvivGeaPgaeedatglpFsgragnllrkllneaglkrdlese.........qgvyitnvvkcrppgnrdtptsaeikacaplleeeiellkp 93 
                   p++++v++G +Pg + +atg+++ ++++nl++kll++ gl+  ++ +           ++ tn++  rp +  +++++ e++++  +l ++i++ kp
  KKY18818.1 169 LRPNLQLVLIGLNPGLQTAATGHAY-AHPSNLFWKLLHSSGLTAYRHPPsdthalmdlYSIGNTNLCS-RPTRDGSSLSKTEMEEGVSILVSKIRHFKP 265
                 6799*********************.*****************96666699*****777777777777.5544449*********************** PP

                 SEEEEESHHHHHH. CS
         UDG  94 rlivllGktaakal 107
                 +++ ++Gk  ++ +
  KKY18818.1 266 EVVGIVGKGIWDVI 279
                 ********999885 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.18
                 .SEEEEES-SSTTTTTTTTSHHHHHHHHHHHH CS
         UDG 123 kirvlplphPsplnrnffksnpelkaeawedL 154
                   r +++  +s+l +    ++  +k+++w++L
  KKY18818.1 364 GARTFVVTTTSGLAAG---MKLNEKEAIWKEL 392
                 3788999999999999...9999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 2488.59
//
Query:       KKY18845.1  [L=782]
Description: putative small oligopeptide opt family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.9e-166  554.7  54.5   3.3e-166  554.5  54.5    1.0  1  OPT       OPT oligopeptide transporter protein


Domain annotation for each model (and alignments):
>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  554.5  54.5  1.9e-170  3.3e-166       2     616 .]      87     728 ..      86     728 .. 0.97

  Alignments for each domain:
  == domain 1  score: 554.5 bits;  conditional E-value: 1.9e-170
         OPT   2 lTlRavvlGillgvlgsavnmyfglrtglvsissipaallafplgkalarilpklslnpgp.ftikEnvliqtmasaaatlalatglivvipalelygq 99 
                 +T+Ra++lGi+++ +g+ vn +f lr+++v i +++a lla+plg + a ilp + +np + f+ikE++l+++m+++++++  a  +   i+a  +yg 
  KKY18845.1  87 NTFRAWFLGIVFVFIGAGVNEFFALRYPSVHIVALVAELLAYPLGVFIANILPICRFNPDRrFNIKEHALVTIMSNVSFGFGSAD-ATNIIQAARFYGF 184
                 8*****************************************************99999988*******************6555.5555555559*** PP

         OPT 100 sagfgylillslsvqllGvgfagplRkflvypeklifPsglataellkalhkpegee.....ksrlkfflivflgsfvwglfplylfpalssfswltwi 193
                 ++++g  ++++l+ qllG+g ag+  +flv p+ +i+P  l  ++ll++lh+  ++      ++r+kffl+v +++f+w+++p+++f+ ls+f w++wi
  KKY18845.1 185 TMKTGFSVMVVLCCQLLGYGVAGLAAPFLVKPAAMIWPGVLSNVALLSSLHSRANAIadgwrITRIKFFLVVGGIAFLWYWLPGLMFTGLSYFTWICWI 283
                 ****************************************************997669***************************************** PP

         OPT 194 apknvvlanlf....glgllpltfdwnviaayiGsglivplwvavnmliGavlswgiliPllyysngwypaylp.............ydvteildedgv 275
                 ap+n  ++++f    glgl+pltfdw++ia y  ++l+ p+w+a+n+++G++++++i+ P++yy+n w+++ylp             yd+t+++ +   
  KKY18845.1 284 APNNLAVNQVFgmvtGLGLFPLTFDWSMIA-YNTNPLLSPHWAAANVFVGFAIFFWIVTPAIYYTNTWFTSYLPlctadvydrfgneYDTTKVV-TGTR 380
                 ******************************.888************************************************************.8889 PP

         OPT 276 ldyekyigyglmllaalvallylvqfaaitllivhtilkhgkdikaalksarsprteeddrhrrlmrkykdvpmwwylallvlslvigiivvealftql 374
                 +d++ky++y++++l+a++a++y+++fa+it++++h+ ++h+++i +alk +      + d+h rlm +yk+vp+ww+ a+++++l+++i+++e+++t+l
  KKY18845.1 381 FDEAKYKEYSPPYLPATFAFVYGLSFASITSVLSHVYFFHWDEIVEALKGT-----LKLDIHARLMMSYKKVPWWWWTAIVAIVLAMSIAMTEVYETGL 474
                 9*************************************************9.....999**************************************** PP

         OPT 375 pvwglllalllafllaivsaiiaGltglnpvsgigkltqlifgallpgrpvanlvfgavvyaaaaqagdfmqDLKtGhllkasPraqfvaqliGtlvga 473
                 pv+g++la+++ ++ +i++++i+G+t++  + ++++l+++i g++++grp+an++f+ +++ ++ q+  f+ D+K+Gh+lk++P+ +f+aq ++t++ga
  KKY18845.1 475 PVYGIFLAFIIPAVYMIPCGMIQGVTNV-DANQLNVLSEFIGGYMFQGRPIANMIFKILSTDVVGQGLYFAADMKLGHYLKIPPKTLFMAQGLATILGA 572
                 ****************************.999******************************************************************* PP

         OPT 474 vvniavlkllvkaygdictadasnaftaPqakvfaavavl..lvggk.........kglpwafllgavapfilllllkkfpkkstarklplplafavgf 561
                 +++++v+ +++ +++ ic  d++n f++P+ ++ ++ +v+  lvg++         +gl  +f++g++ap i+++++kk      +rk+++pl+f ++ 
  KKY18845.1 573 LTQTGVVLWMLGNVPGICDEDQANGFSCPNGRTVFSSSVIwgLVGPGrlysvgriySGLLHFFWIGLIAPPITWYIWKKTG-SDFIRKVNWPLIFVGTY 670
                 *******************************************************************************88.7788999********** PP

         OPT 562 ylppsl...sialligglianlwlkrrdaewakkynyvlaaGLiaGealmgviiaflv 616
                  +pp++   + + +i+ li+n ++ rr  +w+ kynyvlaa+L++G+al+g+ii+f+v
  KKY18845.1 671 NVPPATginYSSWYIVNLIFNKIIFRRFYAWWTKYNYVLAAALDTGLALSGIIIFFAV 728
                 ******7763377999****************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 5258.11
//
Query:       KKY18846.1  [L=1424]
Description: putative helicase swr1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-62  211.2   0.2    3.5e-62  210.1   0.2    1.5  1  SNF2_N      SNF2 family N-terminal domain
      4e-20   72.2   0.0    2.7e-19   69.5   0.1    2.3  2  Helicase_C  Helicase conserved C-terminal domain
    4.2e-10   39.9   0.0    1.4e-09   38.2   0.0    1.9  1  ResIII      Type III restriction enzyme, res subunit
    1.7e-06   28.2   5.8    2.6e-05   24.4   6.3    2.7  2  HSA         HSA
    0.00016   21.5   0.0    0.00041   20.1   0.0    1.6  1  DEAD        DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.038   13.6   0.0       0.11   12.1   0.0    1.7  1  DEAD_2      DEAD_2


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.1   0.2   1.2e-65   3.5e-62      50     349 ..     591     878 ..     586     879 .. 0.84

  Alignments for each domain:
  == domain 1  score: 210.1 bits;  conditional E-value: 1.2e-65
                 HHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH-------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  50 eakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapklla 148
                 ++++++ +GiLaDemGLGKT+q++al++++ +          ++++ gp+Li+vP+s++ +We e+++++++ ++  +++++++++ k+ +  +++ l 
  KKY18846.1 591 KLYANNTNGILADEMGLGKTIQSIALLAHLAE----------VHEAWGPHLIIVPTSVMLNWEMEFKKFLPGFKILTYYGSQEERKAKR-RGWLDDDL- 677
                 5688999*********************3333..........455679**************************977777776644444.33333333. PP

                 ---EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HH........ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........ RF
      SNF2_N 149 dydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekq........ 239
                   +v+it+Y+ + +++       ++k+++w++++lDE+h++kn  s+  ++++ ++t+ r++ltGTP+qn+l++l++Ll fL+++     q        
  KKY18846.1 678 -WNVCITSYQLVLQDQ------VAFKRRNWHYMILDEAHNIKNFRSQRWQTLLGFKTRARLLLTGTPLQNNLTELWSLLFFLQPSDNAGEQdegfaglk 769
                 .48**********888......8************************************************************9754433335666666 PP

                 HHHHHTHHHHH...........HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH CS
                 xxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 240 tfdkllqrpie...........aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalksss 327
                  f++++ +p+             +a++++ +L++++++++lrr k+dvek++P k e++ +++lsk +r++Y   ++ + +            + + +s
  KKY18846.1 770 DFSEWFRKPVDqilehgrdimdDEAREQVTKLHKVIRPFLLRRLKADVEKQMPAKYEHVELCRLSKRQRQLYDGFMSRAQT------------KETLAS 856
                 9*********************99*************************************************32222222............222222 PP

                 -HHH-HHHHHHHHHHHHH---X CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 328 kskekilelllelrqacnhpql 349
                  +   i+++l++lr++cnhp+l
  KKY18846.1 857 GNYLSIINCLMQLRKVCNHPDL 878
                 112459**************98 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.73   2.2e+03      12      56 ..     623     666 ..     613     673 .. 0.68
   2 !   69.5   0.1   9.1e-23   2.7e-19       2     111 .]    1126    1238 ..    1125    1238 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.73
                 HTTTTSEEEEEESSHHHHHHHHHHHHHT..TSTEEEESTTSTHHHHH CS
  Helicase_C  12 leeeggkilifvntidrlekvklllekk..gikvavlhgelpqnere 56 
                  +e  g  li+v+t  +l+    + +k+  g+k+++++g  +q+er+
  KKY18846.1 623 VHEAWGPHLIIVPTSVMLNWEMEF-KKFlpGFKILTYYG--SQEERK 666
                 456666778888998888652233.344669********..666665 PP

  == domain 2  score: 69.5 bits;  conditional E-value: 9.1e-23
                  HHHHHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSS..EEEESGGGTSSSTSTTESEEEESSSSS CS
  Helicase_C    2 kleallell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesd..vLiatdvaerGidipkvnlVinfdlpr 95  
                  kl++l +ll +l++ g+++lif++ ++ l+ ++ +l+ +g ++++l+g+++ ++r++  ++fn++++   ++++++ ++ Gi+++++++Vi++dl++
  KKY18846.1 1126 KLQRLDKLLrQLQSGGHRALIFTQMTKVLDILEQFLNIHGHRYLRLDGSTKLEQRQALTDRFNNDTRIlaFILSSRSGGLGINLTGADTVIFYDLDW 1222
                  788999999999***************998888887888***********************9766555799************************* PP

                  SHHHHHHHHTTSSSTT CS
  Helicase_C   96 nvtsyiqriGRtgRag 111 
                  n++  +q  +R++R+g
  KKY18846.1 1223 NPAMDKQCQDRAHRIG 1238
                  **************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   4.6e-13   1.4e-09       3     169 ..     577     737 ..     575     739 .. 0.80

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 4.6e-13
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.......-EEEEESSHHHHHHHHHHGGGGTGG.........GEEEESSS-B CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee..kflflvprkslleqtleefkkflseayke.....igkkvsgdkk 94 
                 +lreyQ   ++ l+ kl   ++++g+++ + G GKT+ +++l ++l++ ++      l++vp+ s++  ++ efkkfl+   k            ++++
  KKY18846.1 577 NLREYQHFGLDWLA-KLY-ANNTNGILADEMGLGKTIQSIALLAHLAEVHE-AwgPHLIIVPT-SVMLNWEMEFKKFLPGF-KIltyygS-----QEER 665
                 79999999988776.555.79**************************9755.45899999997.68889**********85.44333321.....2222 PP

                 --...........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS...TTTHHHHHT---SEEEEEESS- CS
      ResIII  95 ka....kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak..kswreilekfkeavllglTATp 169
                  +       d++ +++++t++q + +d+         ++r +  ++i DEaH+++    + w+ +   fk   +l lT+Tp
  KKY18846.1 666 -KakrrGWLDDDLWNVCITSYQLVLQDQ-------VAFKRRNWHYMILDEAHNIKNFrsQRWQTL-LGFKTRARLLLTGTP 737
                 .223333458999**********99999.......889999999*********998654699995.5669999999****9 PP

>> HSA  HSA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   6.3   8.7e-09   2.6e-05       2      70 ..     115     183 ..     114     184 .. 0.95
   2 ?   -0.7   0.0       0.6   1.8e+03      17      41 ..     780     805 ..     778     807 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 8.7e-09
                 XXXXXXXX--HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--XXXXXXXXXXXXXXXXXXX. CS
         HSA   2 qeperrqkthhdylLeeilwhakdfkeerkskrakakklaravakyhnniekeeqkriereekerlkal 70 
                 qe++ +q +h d+l++++l+++k +  e+ ++   ak++a  + +  +  +    k +e+ e er++a+
  KKY18846.1 115 QEEPAKQYSHYDHLVAHALHFRKLLDREHAHHVRVAKQVASEIVRGVAVAKSSRPKTEEELEEERRAAM 183
                 577777************************************************************986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.6
                 HHTTHHHHHHH.HHHHHHHHHHHHHH CS
         HSA  17 eeilwhakdfk.eerkskrakakkla 41 
                 ++il+h++d+  +e++ + +k  k+ 
  KKY18846.1 780 DQILEHGRDIMdDEAREQVTKLHKVI 805
                 79******975156777777777775 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.4e-07   0.00041      14     142 ..     596     719 ..     588     741 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.4e-07
                 TCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH..HTT.CSEEEEEHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxx.xxxxxxxxxxxx RF
        DEAD  14 ggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl..dng.vdivvgtpgrld 109
                 + + ++a e G GKT   +i++l++++e ++  g   li++Pt   + +   ++kkf+     ++l  +g++++r+ +++   d +  ++ ++  + ++
  KKY18846.1 596 NTNGILADEMGLGKTIQ-SIALLAHLAEVHEAWG-PHLIIVPTSV-MLNWEMEFKKFLPG--FKILTYYGSQEERKAKRRGwlDDDlWNVCITSYQLVL 689
                 5667889999*****87.8999999988555555.6788888865.5567889******7..5677778866555444433226665777777776666 PP

                 HHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 110 dllstgklnlsqvrflVlDEadrlldqgfsdfi 142
                 +  ++  ++ ++  +++lDEa+++ +  +s+ +
  KKY18846.1 690 Q--DQVAFKRRNWHYMILDEAHNIKNF-RSQRW 719
                 6..66778899************9987.44444 PP

>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.7e-05      0.11     123     162 ..     679     714 ..     675     722 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.7e-05
                 SEEEEEHHHHTSCCCHHHHHT..GCGCEEEECTCCCHHHH CS
      DEAD_2 123 diiilpYqyLldekireslkgislknsivilDEAhNiedv 162
                 ++ i +Yq++l+ +++ + +    +   +ilDEAhNi++ 
  KKY18846.1 679 NVCITSYQLVLQDQVAFKRR----NWHYMILDEAHNIKNF 714
                 7899**********998775....567899*******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1206  (0.0672653); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.49
# Mc/sec: 8699.31
//
Query:       KKY18847.1  [L=153]
Description: putative aldolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-26   93.4   1.0    1.8e-26   93.2   1.0    1.0  1  Aldolase_II  Class II Aldolase and Adducin N-terminal domain
  ------ inclusion threshold ------
      0.067   13.2   0.0      0.096   12.7   0.0    1.2  1  Croc_4       Contingent replication of cDNA 4


Domain annotation for each model (and alignments):
>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   1.0   2.1e-30   1.8e-26      45     186 .]       2     135 ..       1     135 [. 0.84

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 2.1e-30
                  HTGGGEEEEETTSCEEEECECSSSTB-.TTHHHHHHHHHH-TT-SEEEEE--HHHHHHHTCCSTSCHCCSSHHHHC.HSSSEEEEES-SSTTCHHH.. CS
  Aldolase_II  45 ltaedlvvvdldsgevvegkekggkps.setplHlaiykarpdaravvHtHspaavalsalagkeglppltqeaaklllgdevpvipyaapgteel.. 139
                  l+a+d++ +++++g +ve     + ++ +++++H+a +k+rpd++av+H+Hs ++ a+sal  +++l++l+q+ + ++ + +  +++y     ++l  
   KKY18847.1   2 LKASDMICINFKTG-QVEI----P-ANaAGVQIHSATHKRRPDVHAVCHAHSIYGRAYSAL--GKPLEMLNQDVCNFY-NAHSVYTSYGG---VALaa 87 
                  689*******9955.4533....2.3349******************************98..899**********77.44344434443...44446 PP

                  ..HHHHHHHHHHS-SEEEETTTEEEEEESSHHHHHHHHHHHHHHHHHHH CS
  Aldolase_II 140 ..gealaealkedakavllrnHGlltvGetleeAvalaetleeaaeiql 186
                    +e++a+al+ + ka +l nHGlltv +t++eA++   +le+++++ql
   KKY18847.1  88 eeRENIAAALG-NGKATVLMNHGLLTVVQTVDEAAFSYRVLERSCRVQL 135
                  678*******8.569*******************************996 PP

>> Croc_4  Contingent replication of cDNA 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.1e-05     0.096      71     123 ..      34      89 ..      22     100 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.1e-05
      Croc_4  71 sqvPdllaPrqdqekfhdllysaLiksssrsnkdL...yglsrsslalg.laplaqe 123
                 ++ Pd+ a  + +   ++ +ysaL+k   + n+d+   y+ + ++ + g +a +a e
  KKY18847.1  34 KRRPDVHAVCHAHS-IYGRAYSALGKPLEMLNQDVcnfYNAHSVYTSYGgVALAAEE 89 
                 56789999888886.569***************964448889999887624444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.47
# Mc/sec: 977.56
//
Query:       KKY18848.1  [L=117]
Description: putative nadh:ubiquinone oxidoreductase subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-10   39.1   0.6    9.4e-10   38.6   0.6    1.4  1  NDUF_B8   NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASH


Domain annotation for each model (and alignments):
>> NDUF_B8  NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.6   5.2e-14   9.4e-10      59      98 ..       3      42 ..       1      95 [. 0.83

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 5.2e-14
     NDUF_B8 59 GDYPklpvvsaderDPyedWddrdlrrnwGelvhldldry 98
                G Y + p    ++rDPy +W+d+++rrn+Ge+vh d+d  
  KKY18848.1  3 GGYLNPPRQKREDRDPYGEWTDPQERRNFGEPVHEDFDIL 42
                77888899999**************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.30s 00:00:00.75 Elapsed: 00:00:00.47
# Mc/sec: 745.44
//
Query:       KKY18849.1  [L=125]
Description: putative l-psp endoribonuclease family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-39  133.2   0.0    5.1e-39  133.0   0.0    1.0  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.0   0.0   2.8e-43   5.1e-39       3     120 ..      11     124 ..       9     125 .] 0.97

  Alignments for each domain:
  == domain 1  score: 133.0 bits;  conditional E-value: 2.8e-43
                    TSTTTSSS-BSEEEETTEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSSTS--E CS
  Ribonuc_L-PSP   3 aapaaaapYsqavkagnlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelkeaPa 98 
                    +a  +a+pYsqavka ++v v+Gq+p d  +g+l++g++ e+t+q+ +nlka+L+a+g+sl++vV+v vFl+d+++fae+n+ y+++f+++   Pa
     KKY18849.1  11 DACPPAGPYSQAVKAAGQVWVAGQIPAD-TSGNLIDGSIGEKTAQCCKNLKAILEASGSSLDKVVRVGVFLTDMKNFAEMNAEYGKWFTHK---PA 102
                    67779**********************9.6***********************************************************99...** PP

                    EEEEE-SBSGGG-SEEEEEEEE CS
  Ribonuc_L-PSP  99 rsaveVaaLpkgakvEIeaiav 120
                    rs+v+V +Lpkg+ vEIeaiav
     KKY18849.1 103 RSCVAVYQLPKGVPVEIEAIAV 124
                    *********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 809.00
//
Query:       KKY18850.1  [L=564]
Description: putative c2h2 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-05   25.0  10.9      0.075   13.5   1.4    3.4  3  zf-C2H2        Zinc finger, C2H2 type
    5.4e-05   23.4   1.4      0.021   15.0   0.0    2.2  2  zf-C2H2_aberr  Aberrant zinc-finger
    0.00029   21.4  11.9        0.1   13.5   1.0    3.4  3  zf-C2H2_4      C2H2-type zinc finger
    0.00086   19.5   1.7     0.0013   18.9   0.3    1.9  2  DUF4719        Domain of unknown function (DUF4719)
  ------ inclusion threshold ------
      0.014   15.8  17.1      0.029   14.8   1.4    3.5  3  zf-H2C2_2      Zinc-finger double domain
      0.025   14.9   1.5        1.7    9.1   0.2    2.6  2  zf-C2H2_jaz    Zinc-finger double-stranded RNA-binding


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.037   1.1e+02       6      23 .]     126     144 ..     126     144 .. 0.93
   2 !   13.1   0.5   3.4e-05       0.1       1      23 []     446     471 ..     446     471 .. 0.93
   3 !   13.5   1.4   2.5e-05     0.075       1      20 [.     507     526 ..     507     528 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.037
                 TTEEESSHHHHHHHHHC.C CS
     zf-C2H2   6 CgksFkrksnLkrHirt.H 23 
                 Cg + ++ ++L +H+   H
  KKY18850.1 126 CGTTLPTLHDLLQHYEEaH 144
                 **************98777 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 3.4e-05
                 EEET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                 ++Cp  +C k +k++  Lk H    H
  KKY18850.1 446 FRCPviGCEKAYKNQNGLKYHKAHgH 471
                 89*******************88777 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 2.5e-05
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                 ykC+ Cgk++k+   Lk H 
  KKY18850.1 507 YKCETCGKRYKNLNGLKYHK 526
                 9*****************95 PP

>> zf-C2H2_aberr  Aberrant zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     7e-06     0.021     129     162 ..     434     467 ..     418     477 .. 0.84
   2 !    6.9   0.5    0.0021       6.4     146     162 ..     510     526 ..     498     529 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7e-06
  zf-C2H2_aberr 129 vikiiDidkkdliyCripGCgkrfkslmaYkYhc 162
                     ++i   ++++ + C+++GC k +k+  + kYh 
     KKY18850.1 434 TTNILPHEEPKPFRCPVIGCEKAYKNQNGLKYHK 467
                    5666777778889********************5 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0021
  zf-C2H2_aberr 146 pGCgkrfkslmaYkYhc 162
                    + Cgkr+k+l + kYh 
     KKY18850.1 510 ETCGKRYKNLNGLKYHK 526
                    57**************6 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.5      0.02        59       5      24 .]     125     144 ..     123     144 .. 0.87
   2 !    9.3   0.2   0.00075       2.2       1      20 [.     446     467 ..     446     469 .. 0.91
   3 !   13.5   1.0   3.4e-05       0.1       1      23 [.     507     528 ..     507     529 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.02
   zf-C2H2_4   5 iCgksFsskkaLlrHlkthH 24 
                  Cg++ ++ ++Ll+H +  H
  KKY18850.1 125 CCGTTLPTLHDLLQHYEEAH 144
                 49*************88766 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00075
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHl 20 
                 f+Cp+  C k ++++++L+ H 
  KKY18850.1 446 FRCPVigCEKAYKNQNGLKYHK 467
                 89*******************4 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 3.4e-05
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 +kC+ Cgk++++ ++L+ H k+h
  KKY18850.1 507 YKCETCGKRYKNLNGLKYH-KAH 528
                 89*****************.555 PP

>> DUF4719  Domain of unknown function (DUF4719)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.3   4.4e-07    0.0013      55     167 ..      10     122 ..       5     153 .. 0.70
   2 ?   -1.6   0.1      0.81   2.4e+03      82     108 ..     151     177 ..     138     205 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.4e-07
     DUF4719  55 riicpsprrynrrqarpgqrpgppggagplggarrpdddddspallrdeaaatsqdslldssgsgrgrgsgarsdisces....ehelrvvsplflqlp 149
                 r    spr  + +    +   g+ g  gp   a + +    s al r e+ + s +     s + +  g+ +++ is+ s    +  ++ +sp   q p
  KKY18850.1  10 RQSSMSPRDQKSNL--TTALQGAKGMNGPGNAAANSNI--SSDALQRTESRSDSINRNRRESFAASMTGGMSWGGISVGSfirdDMIMTGTSPFTFQSP 104
                 55556666544444..4455677777888766666644..455788888887776666666666666666666666654322227799*********** PP

     DUF4719 150 syeevkylptyeesllle 167
                 sy    ylp  e  ++ +
  KKY18850.1 105 SYHSSSYLPKLEANFMRD 122
                 **********99877654 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.81
     DUF4719  82 gplggarrpdddddspallrdeaaats 108
                 g  +g  rp   +++ a+  + aaa  
  KKY18850.1 151 GSRAGQDRPAIPNNRAAIATNTAAAVQ 177
                 344566666666666666665554443 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.6   0.00029      0.87       9      26 .]     440     459 ..     438     459 .. 0.91
   2 ?   -0.3   1.8       0.6   1.8e+03       1      16 [.     462     478 ..     462     478 .. 0.84
   3 ?   14.8   1.4   9.6e-06     0.029      11      26 .]     503     518 ..     500     518 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00029
   zf-H2C2_2   9 HtgekpyeCp..lCdkaFkt 26 
                 H  +kp+ Cp   C ka+k+
  KKY18850.1 440 HEEPKPFRCPviGCEKAYKN 459
                 8889******877*****97 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.6
   zf-H2C2_2   1 nLrrHirk.Htgekpye 16 
                 +L++H +  H +++ +e
  KKY18850.1 462 GLKYHKAHgHNNQRLHE 478
                 59*****88*9998775 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 9.6e-06
   zf-H2C2_2  11 gekpyeCplCdkaFkt 26 
                 +ekpy+C+ C+k++k+
  KKY18850.1 503 KEKPYKCETCGKRYKN 518
                 79************97 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.016        49       7      21 ..     453     467 ..     451     468 .. 0.94
   2 ?    9.1   0.2   0.00056       1.7       2      21 ..     507     526 ..     506     527 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.016
                  TTBBBSSHHHHHCCT CS
  zf-C2H2_jaz   7 CdKyFksenaldnHl 21 
                  C+K +k++n l+ H+
   KKY18850.1 453 CEKAYKNQNGLKYHK 467
                  ************996 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00056
                  CBBTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHl 21 
                  + C++C K +k+ n l+ H+
   KKY18850.1 507 YKCETCGKRYKNLNGLKYHK 526
                  89***********9999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       804  (0.0448435); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 3759.69
//
Query:       KKY18851.1  [L=255]
Description: putative fungal specific transcription factor domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1721.87
//
Query:       KKY18852.1  [L=239]
Description: putative bzip transcription [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-07   28.9   9.3    1.5e-05   25.0   9.3    2.2  1  bZIP_1         bZIP transcription factor
    7.7e-05   22.7   9.2    7.7e-05   22.7   9.2    2.3  2  bZIP_2         Basic region leucine zipper
     0.0023   18.1   2.2     0.0026   17.9   2.2    1.3  1  Mito_fiss_reg  Mitochondrial fission regulator
     0.0078   15.8   5.4      0.011   15.3   5.4    1.2  1  ASD2           Apx/Shroom domain ASD2
     0.0082   15.6   2.7      0.011   15.2   2.7    1.3  1  PBP_sp32       Proacrosin binding protein sp32
      0.009   14.2   3.8      0.011   13.9   3.8    1.1  1  HOOK           HOOK protein
     0.0096   16.2   2.0      0.051   13.9   2.0    2.1  1  Lzipper-MIP1   Leucine-zipper of ternary complex factor MIP1
  ------ inclusion threshold ------
      0.027   14.8   4.5      0.047   14.0   4.5    1.4  1  Uso1_p115_C    Uso1 / p115 like vesicle tethering protein, C 
      0.035   14.1   6.2      0.067   13.2   6.2    1.4  1  Rootletin      Ciliary rootlet component, centrosome cohesion
      0.039   14.2   5.8      0.062   13.5   5.3    1.6  1  CENP-Q         CENP-Q, a CENPA-CAD centromere complex subunit
      0.046   14.2   1.8      0.097   13.1   1.8    1.5  1  NPV_P10        Nucleopolyhedrovirus P10 protein
      0.054   12.0   1.9      0.069   11.7   1.9    1.1  1  Herpes_UL25    Herpesvirus UL25 family
      0.077   13.1   3.6       0.45   10.7   1.1    2.4  2  MbeD_MobD      MbeD/MobD like
       0.12   12.2   3.1       0.21   11.4   3.1    1.3  1  DUF724         Protein of unknown function (DUF724)
       0.13   12.9   0.9       0.21   12.2   0.9    1.4  1  YabA           Initiation control protein YabA
       0.16   12.0   8.0       0.26   11.3   8.0    1.4  1  DUF2514        Protein of unknown function (DUF2514)
       0.23   11.7   5.7       0.75   10.1   5.4    1.9  2  ABC_tran_CTD   ABC transporter C-terminal domain
       0.25   11.7   4.6        0.8   10.1   0.3    2.4  2  Csm1_N         Csm1 N-terminal domain
       0.28   11.5   3.4       0.52   10.7   3.4    1.5  1  BLOC1_2        Biogenesis of lysosome-related organelles comp
       0.29    9.7   2.2       0.37    9.3   2.2    1.1  1  FapA           Flagellar Assembly Protein A
       0.35   11.5   5.9       0.98   10.1   5.3    2.0  2  SlyX           SlyX
        0.4   11.0   3.8        1.7    8.9   1.1    2.4  2  Spc24          Spc24 subunit of Ndc80
       0.57   10.6   7.0        7.5    7.0   0.5    3.3  3  LPP            Lipoprotein leucine-zipper
       0.57   10.2  14.4      0.037   14.0   8.8    1.9  1  FlxA           FlxA-like protein
        1.8    8.7  11.2        3.7    7.7  11.2    1.5  1  Metal_resist   Heavy-metal resistance
          3    8.4   8.3        1.8    9.1   3.4    2.2  2  HSCB_C         HSCB C-terminal oligomerisation domain
        4.4    7.1  10.6       0.27   11.0   4.2    2.0  2  DivIC          Septum formation initiator


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   9.3   2.2e-08   1.5e-05       4      63 ..      41     103 ..      39     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 2.2e-08
                 XXXXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHH CS
      bZIP_1   4 lKrekrkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLkselee...lkkevekLkskv 63 
                 ++ e++++  Rea+r  RqR ++ ie+Ler+v  L+++  +L   l++   l+ e++ Lk+++
  KKY18852.1  41 AQLERKRANDREAQRTIRQRNKEHIENLERQVIDLTGKKDQLDAALQQnamLEAEIDRLKQQL 103
                 6789****************************9999987777665554344667777777664 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   9.2   1.2e-07   7.7e-05       3      54 .]      40      95 ..      38      95 .. 0.93
   2 ?    5.5   0.6     0.028        18      35      51 ..      90     106 ..      87     109 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.2e-07
                XXXXXXXX.XXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHH CS
      bZIP_2  3 deyrerRr.kNreAarrsRekkkakeeeleervkeLeeeNaqL...rqkveqLeke 54
                +++ er+r + reA r+ R++ k++ e+le++v++L+ +++qL   +q++++Le+e
  KKY18852.1 40 PAQLERKRaNDREAQRTIRQRNKEHIENLERQVIDLTGKKDQLdaaLQQNAMLEAE 95
                56778888799*******************************************98 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.028
                 HHHHHHHHHHHHHHHHH CS
      bZIP_2  35 keLeeeNaqLrqkveqL 51 
                   Le+e+++L+q++++L
  KKY18852.1  90 AMLEAEIDRLKQQLASL 106
                 56999999999999988 PP

>> Mito_fiss_reg  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   2.2   3.9e-06    0.0026      80     172 ..      46     139 ..       8     221 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.9e-06
  Mito_fiss_reg  80 leeekleffekllkrq.dslpslrreekkvksdlkaneeAlkkiaaLedELakLRaQIAkIVaaqeasnssaslelsdtpdllepksssaspsl 172
                     +++++e+++++ +r+ + +++l+r+  + + ++   ++Al++ a Le E  +L+ Q A +    + ++ sa+ +  +t+++++++ s +   +
     KKY18852.1  46 KRANDREAQRTIRQRNkEHIENLERQVIDLTGKKDQLDAALQQNAMLEAEIDRLKQQLASLHHQIQYAEASAFAAAPETMAGSSRTGSVQHDMM 139
                    356666677766666516799**************************************98544333333333333333333322222222222 PP

>> ASD2  Apx/Shroom domain ASD2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   5.4   1.7e-05     0.011      80     161 ..      23     103 ..       2     113 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.7e-05
        ASD2  80 tsaakaelltklkdeteleekdeeeekseeeedldlkekkeeLieslskklevLkeeqealleeikanealgeevealvkev 161
                   + +++  t+  ++ + + + e+++++++e +  ++++ +e ie+l++++ +L+ ++ +l ++ ++n+ l +e++ l +++
  KKY18852.1  23 RRKRESRAGTRSVSMLS-PAQLERKRANDREAQRTIRQRNKEHIENLERQVIDLTGKKDQLDAALQQNAMLEAEIDRLKQQL 103
                 22333333333333333.33334444466777789***************************************99876665 PP

>> PBP_sp32  Proacrosin binding protein sp32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   2.7   1.7e-05     0.011     124     212 ..      12     101 ..       5     131 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.7e-05
    PBP_sp32 124 skvvsilssdtlkevevsaevsslsaetPivte.atstekeafqpwperllnnveellksslslggkekapeakpkeeqllekkqeqlee 212
                 +k++s  s+   ++ e++a + s+s+ +P   e + + ++ea +   +r ++ +e+l +    l gk+ + +a  +++ +le   ++l++
  KKY18852.1  12 QKPTSQDSPGGRRKRESRAGTRSVSMLSPAQLErKRANDREAQRTIRQRNKEHIENLERQVIDLTGKKDQLDAALQQNAMLEAEIDRLKQ 101
                 4999*************************86551678999*99*************************9999999998887766555543 PP

>> HOOK  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   3.8   1.7e-05     0.011     486     579 ..      42     136 ..      24     147 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-05
        HOOK 486 lledanr.rkneLetenrlanqrileLeaqveelqkalqeqgskaedssllkkkleehleklkevqeelqkkkeqleelepklssnkqkieelee 579
                 +le ++   ++  +t ++ ++++i++Le+qv +l+ ++++ ++  ++ + l+ +++++ ++l ++++++q  ++     +p++++ ++++ ++++
  KKY18852.1  42 QLERKRAnDREAQRTIRQRNKEHIENLERQVIDLTGKKDQLDAALQQNAMLEAEIDRLKQQLASLHHQIQYAEASAFAAAPETMAGSSRTGSVQH 136
                 55544330345556777788999999999999999999999999988899999999999999999999999888887888888888877777776 PP

>> Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   2.0   7.6e-05     0.051      52      81 ..      81     110 ..      41     112 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.6e-05
  Lzipper-MIP1  52 kakellkeiallEeevvkLEqkllsLyrkl 81 
                   +    l+  a+lE+e+ +L+q+l sL+ ++
    KKY18852.1  81 QLDAALQQNAMLEAEIDRLKQQLASLHHQI 110
                   566677888******************986 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   4.5   7.1e-05     0.047      11      78 ..      52     120 ..      40     140 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.1e-05
  Uso1_p115_C  11 aslkdeneklkaelqslskalesleqk.eakkaaesqakeleaenkklekeleklraelkeekekekek 78 
                  + +++  ++ k  +++l++++ +l  k  ++ aa +q+ +leae+++l+++l  l  +++ ++ ++ ++
   KKY18852.1  52 EAQRTIRQRNKEHIENLERQVIDLTGKkDQLDAALQQNAMLEAEIDRLKQQLASLHHQIQYAEASAFAA 120
                  34567778888999999999999999978888999************************9999888554 PP

>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   6.2    0.0001     0.067      43     130 ..      27     115 ..       5     128 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.0001
   Rootletin  43 tselektkltlllssareleeeesadleealakLeeErqrseklaqvnsl..LreqleearqaneaLtedlqkltkdwerlreeleqkek 130
                 +s+ +++++++l++ + e+++ + ++ ++++++ + E+  + +  qv +l   ++ql++a q+n  L+ ++++l++++ +l+++++  e+
  KKY18852.1  27 ESRAGTRSVSMLSPAQLERKRANDREAQRTIRQRNKEHIENLE-RQVIDLtgKKDQLDAALQQNAMLEAEIDRLKQQLASLHHQIQYAEA 115
                 4445555555555666777777788888888888888888777.44443312589***************************99988776 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   5.3   9.3e-05     0.062      24      82 ..      65     123 ..      40     166 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.3e-05
      CENP-Q  24 eldfeklldekaaleaqLspelhslelLeaeiekeeralerdyeaLreLeknakaeare 82 
                   ++e+ +   +  ++qL+++l++ + Leaei+++++ l++ + +++  e++a a+a e
  KKY18852.1  65 IENLERQVIDLTGKKDQLDAALQQNAMLEAEIDRLKQQLASLHHQIQYAEASAFAAAPE 123
                 5566666667777789******************************9999999888776 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.8   0.00015     0.097      11      59 ..      63     111 ..      56     116 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00015
     NPV_P10  11 adikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkve 59 
                 + i++++ +V  l  + d++++ l++   l++++d++ +qLa+l+ +++
  KKY18852.1  63 EHIENLERQVIDLTGKKDQLDAALQQNAMLEAEIDRLKQQLASLHHQIQ 111
                 6799****************************************99887 PP

>> Herpes_UL25  Herpesvirus UL25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.9    0.0001     0.069      21     111 ..      49     151 ..      35     174 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0001
                  ...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXX......XX CS
  Herpes_UL25  21 slrepereaellreealeasreevevlevkkralraeLdnlaqkavalaeeierrlkevEellekiael........eaaaaaeeaaaar......pp 104
                  + re++r ++   +e +e+ +++v +l+ kk  l a+L++ a+ ++++  +++++l+ + ++++  ae+        ++a ++  +++++        
   KKY18852.1  49 NDREAQRTIRQRNKEHIENLERQVIDLTGKKDQLDAALQQNAMLEAEI-DRLKQQLASLHHQIQ-YAEAsafaaapeTMAGSSRTGSVQHdmmvqrGS 144
                  556666666666666666666666666666666666666555544433.455555666555555.444422111111222222222222221111133 PP

                  XXXXXXX CS
  Herpes_UL25 105 lspssas 111
                   sp s+s
   KKY18852.1 145 FSPMSQS 151
                  3333333 PP

>> MbeD_MobD  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1       0.2   1.3e+02      47      67 ..      61      81 ..      44      84 .. 0.76
   2 ?   10.7   1.1   0.00067      0.45      41      66 ..      86     111 ..      79     113 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.2
   MbeD_MobD 47 LseqvtgLsqQVesLseqvrR 67
                 +e++++L +QV +L ++ + 
  KKY18852.1 61 NKEHIENLERQVIDLTGKKDQ 81
                368899999999999988665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00067
   MbeD_MobD  41 qrenaaLseqvtgLsqQVesLseqvr 66 
                  ++na+L++ +++L qQ  sL +q++
  KKY18852.1  86 LQQNAMLEAEIDRLKQQLASLHHQIQ 111
                 699******************99985 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.1   0.00032      0.21     110     179 ..      44     115 ..      36     122 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00032
      DUF724 110 erkklekkieeeesekrkleeeidelekkilelerqlallk...ekkeaadkeiarlkseaekleeeledveq 179
                 erk+++ + ++  + +++ +e+i++le+++++l  ++++l    +++   ++ei rlk++ ++l+++++ +e 
  KKY18852.1  44 ERKRANDREAQR-TIRQRNKEHIENLERQVIDLTGKKDQLDaalQQNAMLEAEIDRLKQQLASLHHQIQYAEA 115
                 555555444444.44667899**********999888887777799999999*******99999999998875 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.9   0.00032      0.21      13      58 ..      64     109 ..      48     136 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00032
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXX CS
        YabA  13 leeqleelleeleelkeelaelleenaeLeleneklrerleeeekk 58 
                   e+le+ + +l+  k++l + l++na Le+e ++l+++l++ +++
  KKY18852.1  64 HIENLERQVIDLTGKKDQLDAALQQNAMLEAEIDRLKQQLASLHHQ 109
                 334455555556666999**********************433332 PP

>> DUF2514  Protein of unknown function (DUF2514)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   8.0   0.00039      0.26      37     127 ..      46     138 ..      21     144 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00039
     DUF2514  37 daedsqakviaeeaaReeeqrrkaaaekavkd...aqekaaaAradavgaaaaadrLrqeaakL.aaaksavaadsaaaargkaaa...raavvLadl 127
                 +++       a++  R+++++ ++  e+ v d    + +++aA ++ + ++a+ drL+q++a L +  + + a+ sa aa+ ++ a   r++ v  d+
  KKY18852.1  46 KRA---NDREAQRTIRQRNKEHIENLERQVIDltgKKDQLDAALQQNAMLEAEIDRLKQQLASLhH--QIQYAEASAFAAAPETMAgssRTGSVQHDM 138
                 222...22233444444444444444444433221467889***********************42..333333444444433322112455555555 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.4    0.0011      0.75       7      61 ..      62     114 ..      57     116 .. 0.87
   2 ?    6.7   2.8     0.013       8.4      12      35 ..      91     114 ..      81     126 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0011
  ABC_tran_CTD   7 qreleeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeely 61 
                   +  +e+le++   L  ++ +l+a+l+++++   ++++ +l ++l+ l ++++ ++
    KKY18852.1  62 KEHIENLERQVIDLTGKKDQLDAALQQNAML--EAEIDRLKQQLASLHHQIQYAE 114
                   45599***********************955..789************9998776 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.013
  ABC_tran_CTD  12 eleaeIeaLEeeiaeleaeladpe 35 
                    leaeI++L +++a+l+ +++ +e
    KKY18852.1  91 MLEAEIDRLKQQLASLHHQIQYAE 114
                   499*************99987665 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   1.0      0.17   1.1e+02      39      65 ..      61      87 ..      49      90 .. 0.75
   2 ?   10.1   0.3    0.0012       0.8      34      63 ..      87     116 ..      85     122 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.17
      Csm1_N 39 kdqeiesLkeqlaeleekvkeleerrk 65
                 ++ ie+L++q+  l  k ++l+   +
  KKY18852.1 61 NKEHIENLERQVIDLTGKKDQLDAALQ 87
                35669*******999999998887655 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0012
      Csm1_N  34 qkletkdqeiesLkeqlaeleekvkeleer 63 
                 q++   + ei +Lk+qla+l+++++ +e +
  KKY18852.1  87 QQNAMLEAEIDRLKQQLASLHHQIQYAEAS 116
                 556667889999999999999999877765 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.4   0.00078      0.52      38      87 ..      60     109 ..      41     117 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00078
     BLOC1_2  38 klkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLDey 87 
                   k+ +++le+++ +l  k+++l+  lqq   +e+++++L++  + L + 
  KKY18852.1  60 RNKEHIENLERQVIDLTGKKDQLDAALQQNAMLEAEIDRLKQQLASLHHQ 109
                 56788899999999999999999999999999999999999887777655 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.2   0.00056      0.37     340     412 ..      41     114 ..      24     136 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00056
        FapA 340 keleeeleeleeeleklkkk.ikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskk 412
                 ++le++  + +e +++++++  +++++l+ +      kk+ql+ +l++   l+ e+  l+++l++l ++++  +
  KKY18852.1  41 AQLERKRANDREAQRTIRQRnKEHIENLERQVIDLTGKKDQLDAALQQNAMLEAEIDRLKQQLASLHHQIQYAE 114
                 68999999999999999999855555555678888999999999999999999999999999999999999873 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.8      0.34   2.3e+02      17      41 ..      63      87 ..      52      90 .. 0.59
   2 ?   10.1   5.3    0.0015      0.98       3      56 ..      63     119 ..      61     125 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.34
                HHHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX 17 dtieeLndvvaeqqqqidrlqrqlr 41
                + ie L ++v++   + d+l + l+
  KKY18852.1 63 EHIENLERQVIDLTGKKDQLDAALQ 87
                3455555555555555555555544 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0015
                 HHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHT-XXXXXXXXX CS
        SlyX   3 erleeLEiklafqedtieeLndvvae...qqqqidrlqrqlrllaerlkeleessga 56 
                 e++e+LE ++  +    ++L++++ +    + +idrl++ql+ l+ +++ +e+s+ a
  KKY18852.1  63 EHIENLERQVIDLTGKKDQLDAALQQnamLEAEIDRLKQQLASLHHQIQYAEASAFA 119
                 78999999999999888888888866222578****************998888654 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.5     0.067        44       7      36 ..      59      88 ..      53      92 .. 0.86
   2 ?    8.9   1.1    0.0025       1.7      10      40 ..      86     116 ..      79     185 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.067
       Spc24  7 friakelsdleselesleselaelkeelee 36
                +r  +++++le+++ +l+ ++++l + l++
  KKY18852.1 59 QRNKEHIENLERQVIDLTGKKDQLDAALQQ 88
                56678999*****************99997 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0025
       Spc24  10 akelsdleselesleselaelkeeleeleee 40 
                  +++  le+e+++l+++la+l+++++  e +
  KKY18852.1  86 LQQNAMLEAEIDRLKQQLASLHHQIQYAEAS 116
                 5778899***************999987765 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1      0.28   1.8e+02      32      43 ..      40      51 ..      32      52 .. 0.86
   2 ?    3.4   0.4      0.15     1e+02       2      25 ..      65      88 ..      64      94 .. 0.77
   3 ?    7.0   0.5     0.011       7.5       4      36 ..      91     123 ..      88     126 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.28
         LPP 32 aakeEAaRANqR 43
                 a+ E +RAN+R
  KKY18852.1 40 PAQLERKRANDR 51
                589999*****9 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.15
         LPP  2 ldeLssqVsqLkskvdqlssdvns 25
                +++L  qV +L  k dql + +++
  KKY18852.1 65 IENLERQVIDLTGKKDQLDAALQQ 88
                678888888888888888887665 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.011
         LPP   4 eLssqVsqLkskvdqlssdvnsakaaaqaakeE 36 
                 +L +++ +Lk++ ++l  +++ a+a a aa  E
  KKY18852.1  91 MLEAEIDRLKQQLASLHHQIQYAEASAFAAAPE 123
                 577889999999999999999998888777655 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   8.8   5.6e-05     0.037      24      91 ..      63     129 ..      45     138 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.6e-05
        FlxA  24 kQiknlqkqLkelsesdeltkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaqekqqsekeeksksk 91 
                 + i+nl+ q+ +l+ + +   +   +q  +++a+I+ l++Q+a l  q +  ++++ + + e ++ s+
  KKY18852.1  63 EHIENLERQVIDLTGK-KDQLDAALQQNAMLEAEIDRLKQQLASLHHQIQYAEASAFAAAPETMAGSS 129
                 4599999999999999.34444469******************9877766666666555555555555 PP

>> Metal_resist  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  11.2    0.0056       3.7      32     119 ..      30     125 ..      15     131 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0056
                   H.........HHHHHHHS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
  Metal_resist  32 g........raellraalgLpaeqraelraalrdharelralrrelraarrelaallaaepfDaaaieaalaeiraaqaalraqieeallefaatl 119
                   +         ++ l++ ++ ++e++++ r++ ++h ++l+ +  +l+ ++++l+a+l+++   +a i+ + ++++ ++++++ + + a++++ +t+
    KKY18852.1  30 AgtrsvsmlSPAQLERKRANDREAQRTIRQRNKEHIENLERQVIDLTGKKDQLDAALQQNAMLEAEIDRLKQQLASLHHQIQYAEASAFAAAPETM 125
                   1234466776777777778899**********************************************************9999999999888887 PP

>> HSCB_C  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.4    0.0026       1.8      17      60 ..      44      87 ..      40      93 .. 0.80
   2 ?    1.8   1.1       0.5   3.4e+02      35      58 ..      92     115 ..      81     126 .. 0.48

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0026
                HCGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT.-HHHHHH CS
      HSCB_C 17 eeaeeaadkeeleelkaeveerieeleaeleeafekk.dleaaad 60
                e    a+d e+ + ++++++e+ie+le ++ ++  kk +l+aa +
  KKY18852.1 44 ERK-RANDREAQRTIRQRNKEHIENLERQVIDLTGKKdQLDAALQ 87
                555.35588999**********************55548887766 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.5
                 HHHHHHHHHHHHHHHHHTT.-HHHH CS
      HSCB_C  35 veerieeleaeleeafekk.dleaa 58 
                 +e++i+ l ++l+++  ++ ++++a
  KKY18852.1  92 LEAEIDRLKQQLASLH-HQiQYAEA 115
                 3444444444444443.22233333 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   2.2      0.48   3.2e+02      27      53 ..      52      78 ..      39      83 .. 0.58
   2 ?   11.0   4.2   0.00041      0.27      12      59 ..      68     115 ..      64     117 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.48
                HHHHHHHHHHHHHHHHHHHHHCC-XXX CS
       DivIC 27 aalqaelaklkaeneeLeaevkdLksd 53
                +a+    ++ k+ +e+Le++v dL+  
  KKY18852.1 52 EAQRTIRQRNKEHIENLERQVIDLTGK 78
                333333444555667788888888544 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00041
                 XXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXX CS
       DivIC  12 gkkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyiee 59 
                 +++++ ++  +k +++a  +++a l ae+++L+++++ L+++  y e+
  KKY18852.1  68 LERQVIDLTGKKDQLDAALQQNAMLEAEIDRLKQQLASLHHQIQYAEA 115
                 688999999999999999999999999999999999999887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1701  (0.0948742); expected 358.6 (0.02)
Passed bias filter:                      719  (0.0401026); expected 358.6 (0.02)
Passed Vit filter:                       120  (0.00669307); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.50
# Mc/sec: 1445.03
//
Query:       KKY18853.1  [L=580]
Description: putative multicopper oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-39  132.9   8.7    5.5e-38  129.8   0.3    3.1  2  Cu-oxidase_2  Multicopper oxidase
    1.9e-38  131.1   2.4    1.9e-38  131.1   2.4    2.7  3  Cu-oxidase_3  Multicopper oxidase
    1.9e-33  115.8   0.8    1.7e-31  109.5   0.4    2.5  2  Cu-oxidase    Multicopper oxidase


Domain annotation for each model (and alignments):
>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   2.6    0.0027        16      40     131 ..     112     190 ..      80     195 .. 0.69
   2 !  129.8   0.3   9.1e-42   5.5e-38       4     134 ..     423     544 ..     414     547 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0027
                   TEEEEEEEEE-SSS.-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-T..TEEEEEEEES.S-EEEEEEESSHHHHHTT-EEEE CS
  Cu-oxidase_2  40 gevveiviqnntkl.pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvpp..ggwvairfkadnpGvwllHCHilwHldqGmalqf 131
                   g++v + ++n  +    ++H+HG +    +                 + +   ++q p   g++v++ ++a + G   +H+H+   + +G  + +
    KKY18853.1 112 GDTVVVHVKNGFTDnGTSIHWHGIRQNYTND----------------QDGVASVTQCPTapGETVTYTWRAVQYGSTWYHSHFSLQAWEGVFGGV 190
                   4555555555333333577777775555544................4444666666555599*******************9877766666555 PP

  == domain 2  score: 129.8 bits;  conditional E-value: 9.1e-42
                   -SCCCCCCCEEEEEEEEEEEETCCTTTSSEEEEEET.TEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTE CS
  Cu-oxidase_2   4 pklptllqltsgneeaseitngeefsentnvitlpk.gevveiviqnntklpHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppgg 99 
                   +++ptllq+  +        n++ ++ ++nvi++p  + +v++vi+ +  +pHP+HlHGhdf ++g g+g+  ++d+++++l+np+rrdt+++p+ g
    KKY18853.1 423 WEDPTLLQIY-N--------NDTVYNATQNVIEVPDaNVWVYLVIETSIGVPHPIHLHGHDFLLIGYGTGT-YDPDNTTVQLSNPPRRDTATLPGTG 509
                   6777777777.2........66799**********99*********************************9.999999******************* PP

                   EEEEEEES.S-EEEEEEESSHHHHHTT-EEEEEEE CS
  Cu-oxidase_2 100 wvairfkadnpGvwllHCHilwHldqGmalqfvvr 134
                   +++++f++dnpG+wl HCHi wH+++G+alqf++r
    KKY18853.1 510 YIIMAFETDNPGAWLTHCHIGWHTSEGFALQFIER 544
                   *********************************98 PP

>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.9   1.1e+04      60      72 ..      51      63 ..      48      65 .. 0.80
   2 !  131.1   2.4   3.2e-42   1.9e-38       5     118 ..      84     196 ..      80     197 .. 0.94
   3 ?   -1.3   0.0      0.36   2.1e+03      31      96 ..     258     328 ..     255     334 .. 0.58

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.9
                  GG.....GSCSGG CS
  Cu-oxidase_3 60 ktswmDGvpgvtq 72
                  ++sw DG++  t+
    KKY18853.1 51 RSSWCDGFDINTN 63
                  678****999886 PP

  == domain 2  score: 131.1 bits;  conditional E-value: 3.2e-42
                   EEEECTTEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-S.SS-B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEEEEEE-- CS
  Cu-oxidase_3   5 ktvsplggterevitvNgqfpgptievregdtvvvnvtNkl.dentsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtlwYhshl 100
                   +t +p+g + r v+tvNg++pgpti +++gdtvvv+v+N + d++tsihwhG++q+ t+ +DGv+ vtqcp +pge++ty++++ q +g++wYhsh+
    KKY18853.1  84 TTLAPDGVE-RIVLTVNGTLPGPTIFADWGDTVVVHVKNGFtDNGTSIHWHGIRQNYTNDQDGVASVTQCPTAPGETVTYTWRAVQ-YGSTWYHSHF 178
                   566677766.*******************************9999*****************************************.********** PP

                   TTHHHTT-EEEEEEE-HH CS
  Cu-oxidase_3 101 slqqaaGlaGaiiiedke 118
                   slq ++G++G +ii+ ++
    KKY18853.1 179 SLQAWEGVFGGVIINGPA 196
                   ***9**********9875 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.36
                   EETT-EEEEEEEE-S...SS-B-EEEET--S-GG.....GS.CSGGG-B-TT-EEEEEEE--S.-SEEEEE CS
  Cu-oxidase_3  31 vregdtvvvnvtNkl...dentsihwhGlqqrktswmDGvp.gvtqcpiqpgesftyrftvkq.qagtlwY 96 
                   v+ gd+ +++++N++   + ++ +  h l + ++      p   t+  i  g++++  +t++q  +gt ++
    KKY18853.1 258 VTAGDSYRLRLVNSAidtHFKFMVDNHTLTVIGNDLVPIEPyNTTMVNIFIGQRYDVILTANQeDIGTDFW 328
                   66677777777777654334455666666666662222222134556677777777777777745677666 PP

>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   0.4   2.8e-35   1.7e-31       3     158 ..     205     354 ..     203     355 .. 0.89
   2 !    4.0   0.0    0.0083        50      25     101 ..     388     485 ..     371     495 .. 0.74

  Alignments for each domain:
  == domain 1  score: 109.5 bits;  conditional E-value: 2.8e-35
                 EEEEEEEETCBCTTSCBC.HSSCHCHHHHHTT--SEEEETTBSS.......CTTTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEEEETCET CS
  Cu-oxidase   3 yvitlsDwyhkdakelekellasgkapadtppvpdavlingkggfnatladkdgaslatltvepgktyrlriinvsaddslnfsIeGHkltVvevDgvy 101
                  v+ l+Dw h++ ++l++  ++++       pv  + ling++ + ++    +  s ++++v++g+ yrlr++n ++d++++f +++H+ltV+  D v+
  KKY18853.1 205 GVLFLTDWSHETVDALWE-TAQTSG-----APVMENALINGTNVYESDDG--EVGSRFSMAVTAGDSYRLRLVNSAIDTHFKFMVDNHTLTVIGNDLVP 295
                 5899***********999.444444.....4799*******999887755..478******************************************** PP

                 TSEEEESCEEE-TTEEEEEEEEE-S.S.SEEEEEEEEGSSSCHHHHTTSEEEEEEEEST CS
  Cu-oxidase 102 vepvevdsldIavGqrysvlvtanq.a.pgnYwivasgrsnlieafengtaaailryse 158
                 +ep++++ ++I+ Gqry+v++tanq +   ++w++a  +++ ++++ + +  +il+y+ 
  KKY18853.1 296 IEPYNTTMVNIFIGQRYDVILTANQeDiGTDFWMRAIPQDACSDNDSTDNIKGILHYGT 354
                 *************************55899******9677778888999999****985 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0083
                 CHCHHHHHTT--SEEEETTBSS.......C....................TTTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEEEE.TCET CS
  Cu-oxidase  25 sgkapadtppvpdavlingkggfnatladk....................dgaslatltvepgktyrlriinvsaddslnfsIeGHkltVvev.Dgvy 101
                 ++ + +  p +  +v+in ++ f  tl+++                     +a   +++v         +i +s+   +++ ++GH + ++   +g+y
  KKY18853.1 388 TASSSTYDPDETASVTINSENHFRWTLNSYsffsewedptllqiynndtvYNATQNVIEVPDANVWVYLVIETSIGVPHPIHLHGHDFLLIGYgTGTY 485
                 33333333888999999999999999999888888999999999999885444555566655555556666***************999997645555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 4097.59
//
Query:       KKY18854.1  [L=198]
Description: putative cytochrome p450 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1563.74
//
Query:       KKY18855.1  [L=498]
Description: putative sugarlactone [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-87  293.3   0.0    2.5e-87  293.0   0.0    1.1  1  ALO            D-arabinono-1,4-lactone oxidase
    4.7e-17   62.0   0.1    7.4e-17   61.4   0.1    1.3  1  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> ALO  D-arabinono-1,4-lactone oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.0   0.0   2.7e-91   2.5e-87       1     260 []     115     406 ..     115     406 .. 0.97

  Alignments for each domain:
  == domain 1  score: 293.0 bits;  conditional E-value: 2.7e-91
         ALO   1 vtlrvvpaftlkskqevikfetllenwdell.kssefirvwwfPytekavvwrankteepeeskprkslkdellgrlvyeallalsrifpsltplverf 98 
                 +t+r+v  f+++++q+ ++++++l++wd++l +s+ef rvww+Py ++ vvwra+kt+++  + p+ks++++ +g+++y++ll+l++++p++ p+ve+f
  KKY18855.1 115 ITFRAVSDFKIEWTQTLEPLSKILDTWDTTLwTSAEFTRVWWLPYGDTGVVWRAHKTDKSL-APPPKSYYSSRFGYHTYHCLLWLAQCVPRINPWVEWF 212
                 79**************************8655****************************9.9************************************ PP

         ALO  99 vfklqyg.....kgdeavqdsyevfnmdclvsqfvnEwaiplekgpevLrelkaliekaa.............elkvhfPievRcsnad.......... 169
                 vf++qyg      +++avq   e++ mdcl+sqfvnEwa+pl++gpe++++l++ +++ +             +l+vh+PievR+s+++          
  KKY18855.1 213 VFGMQYGfkpgaRTSTAVQFGREGLLMDCLYSQFVNEWALPLKSGPEAITRLREFLRNPKdhsrisgipyssaGLYVHSPIEVRVSDTSgktglvdans 311
                 ***********9999******************************************9999************************************** PP

         ALO 170 rplL.svtndrdtlyinatmYrpfetnvp.tekyfkafedimkkagGrPHWaKnflltae.dlkelY.pdlkkflkvRkklDPegvFlnewlerl 260
                 rplL  ++ d++tly+nat Yrp+ +++p t++y++afe +m++++GrPHWaKnf+ +++ +++++Y +dl++f+k+R+++DP+g+Fl+ew++r+
  KKY18855.1 312 RPLLdPTCRDEPTLYLNATLYRPYLRDPPcTDRYYQAFEYLMREMKGRPHWAKNFTAESSpEIADMYgEDLQDFMKIRDEVDPNGMFLGEWHRRN 406
                 ****5566899*********************************************987637*******************************97 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.1   8.3e-21   7.4e-17      47     139 .]       1      91 [.       1      91 [. 0.96

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 8.3e-21
                    EEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCGSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEEE CS
  FAD_binding_4  47 vldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgipgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrls 139
                    +++l+++  il+ d e+g++t+++G +l dl ++la++gl  + + gs+++++v+G+i+t+++G  s  +Gli++ + +++++la+G+vv++s
     KKY18855.1   1 MINLDNFSEILSADTESGVVTFQSGLRLRDLTKELAKRGLSMP-NLGSIDEQSVAGVISTGTHG-SSLNHGLISESISSMKLILANGQVVQCS 91 
                    689999*****************************99999998.9*******************.9999*********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3633.48
//
Query:       KKY18856.1  [L=991]
Description: putative protein translocation complex component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-16   60.3   1.8    5.9e-16   58.4   1.8    2.1  1  DnaJ      DnaJ domain
    5.3e-09   35.6   0.0    3.5e-08   32.9   0.0    2.0  1  Sec63     Sec63 Brl domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   1.8   6.6e-20   5.9e-16       1      62 [.     400     468 ..     400     468 .. 0.87

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 6.6e-20
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHH.......HHHHHHHHHHHHTSHHHHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaee.......kFkeineAyevLsdpekRkqY 62 
                 d+Y+iL + ++ase+eI + Y++l+lkyHPDk + d +++e       +F e+++Ay+ L+d+e R++Y
  KKY18856.1 400 DPYDILDIRRSASEKEISRHYKRLSLKYHPDKIRPDASKNEtmemlndRFVELTKAYKALTDEEVRNNY 468
                 78*****************************88555544444556667*******************99 PP

>> Sec63  Sec63 Brl domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   3.9e-12   3.5e-08      16     253 ..     533     902 ..     529     905 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 3.9e-12
                 HHHHHHHHHS-TT--HHHHHHHHHTSGGGGGS---TTHHHHHHHHHHT.........SSS--...S..SSTTSH.HHHHHHHHHHHHTT---SSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxx...x..xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63  16 etiklfneslkpnttlkdlLeilssasEFeeipvReeEkkelkkLlek.........vpikv...k..ediesp.eaKvniLlqayisrlklegsdlvs 99 
                 ++ + + +++k+++++++l+ ++s  +E + +    + ++ l k+ +                  +  ++ie+p   K+  Ll ay++r++l +  l s
  KKY18856.1 533 NSANKLFKEFKEDMNEASLVGAVSDGDEHKAVLKDSNGEDGLGKVEKAvlssenlhlS---PearSvlKSIEDPvRRKALALLWAYLGRIELGDAVLDS 628
                 5566666779999999999999999999999999999999999998776666664431...2444245778777368********************** PP

                 HHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS-TT..................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................... RF
       Sec63 100 DlkyilqnairilralveillskgwlslalslleLskmveqrlwds..................................................... 145
                 +   ++  a ++++a + i+l+ g l ++ls  + s+++ q++ +                                                      
  KKY18856.1 629 EKYEVAAIALKLTNAFTSITLAFGLLGPLLSSYRTSQSLIQAIPPGsspllqlpyftpqlaasierkltsltiqkfmnlsdstrrqlcaglsrhqyeta 727
                 ********************************************7779*************************************************** PP

                 ......S--EEEEEEE................................CEBTTSEEE.......EEEEEEESSS......S-S............CTSS CS
                 ......xxxxxxxxxx................................xxxxxxxxx.......xxxxxxxxxx......xxx............xxxx RF
       Sec63 146 ......lPkleieaev................................qpitrsklr.......vevtiereee......esk............pdfp 181
                       lP ++i+ +                                 +p++++ l        v+  + r++       +              p f 
  KKY18856.1 728 itvasqLPYVSITKQFfkvvgekavtpsslvqfvvkarvippgsisvpEPNASELLDvdpeegdVNAILGRNKGegkpgaS-PgskaavpplahaPYFA 825
                 ******555555444445555555555555555556666666666666555555555555555588889877766766650.15556899999989999 PP

                 S-CHTSBEEEEEEEEETTTTEE.......EEEEEEEESSTTTTT..EEEEEEEEEEE-.SSCCEEEEEEEEESSSSS-EEE CS
                 xxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63 182 wdkkgksekfwlvvedsendel.......laikrvtlekkklas..tqevkleftvplsepgpkqltvrlisdswlgldqe 253
                  d    s  + +++ ds+  ++        a+++  ++++ + +   q+ k +f++p+ + g+  +t ++++ds++gld++
  KKY18856.1 826 RDH---SPRWHVFLADSKAARIavppfsfTAFEKAVFNDDGTPTfnVQTWKCQFQAPP-QVGKFIFTYHVVCDSYVGLDSS 902
                 999...*************99933332223555555555443336678888*****77.888****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (991 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       801  (0.0446762); expected 358.6 (0.02)
Passed bias filter:                      622  (0.0346924); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 6777.02
//
Query:       KKY18857.1  [L=973]
Description: putative hsp70 family chaperone lhs1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-64  217.7   8.3    6.5e-61  206.3   0.2    2.7  3  HSP70         Hsp70 protein
     0.0021   17.0   0.1     0.0055   15.6   0.1    1.7  1  MreB_Mbl      MreB/Mbl protein
  ------ inclusion threshold ------
      0.073   13.1   0.1        0.2   11.7   0.1    1.7  1  AbiEi_3_N     Transcriptional regulator, AbiEi antitoxin N-te
      0.091   12.5   0.4       0.21   11.4   0.4    1.5  1  DUF285        Mycoplasma protein of unknown function, DUF285
        0.7    9.7   6.2        0.6   10.0   0.3    2.4  2  REC1          Alpha helical recognition lobe domain
          5    7.0   7.9        7.9    6.3   1.8    2.5  2  CheZ          Chemotaxis phosphatase, CheZ


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.3   0.2   2.2e-64   6.5e-61       1     414 [.      34     489 ..      34     514 .. 0.87
   2 !   16.4   0.0   6.9e-07    0.0021     509     596 ..     668     761 ..     613     764 .. 0.81
   3 ?   -4.3   0.8       1.3   3.8e+03     240     291 ..     891     943 ..     878     965 .. 0.48

  Alignments for each domain:
  == domain 1  score: 206.3 bits;  conditional E-value: 2.2e-64
                 EEEEEEXSSEEEEEEEETTEE.EEEXXTTSXSSEESEEEEXT.........T..SEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSS CS
       HSP70   1 viGiDLGttnsvvavmeggki.evianeegnrttPsvvaFtk.........k..erlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpy 87 
                 v+GiD Gt++   a ++ g + +++  + ++r   +++aF++            erl G+ A    ++ p ++  ++K+l+G +++d+++ +  + +p 
  KKY18857.1  34 VLGIDFGTEYIKAALVKPGVPlDIVLTKDSRRKEAATIAFKPikssssdadAlpERLYGADASALSARFPGDVYPNLKQLLGLSYDDEVASEYRQRFPG 132
                 79************999886549*****************8555555555424589*******************************999999999**9 PP

                 EEEEETTSBEEEEEEETTE...EEEHHHHHHHHHHHHHHHHHHHHTSB..EEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCC CS
       HSP70  88 kvvkkengkavveveaage...kftpeqisamvLkklketaeaylgkk..vtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldk 181
                   ++k  +k++ + +  g+    ft e+i am L++++++ae  +gk   v+d+vit+P++++ a+R++   A+++AGL+vl ++ +  A+++ Y   +
  KKY18857.1 133 LAMTKVGDKVGFQSNSLGNaqdPFTLEEILAMELQNIQANAEVAVGKGlkVSDVVITIPSFYTAAERRSLELAAELAGLKVLALISDGLAVGINYATSR 231
                 999999**********9998888**********************99555*********************************************9998 PP

                 SS.......SCEEEEEEEEXSSXEEEEEEEEE.....TT.......EEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSX...X.....GGGSHHHH CS
       HSP70 182 kd.......kernvlvyDlGggtfdvSilele.....kG.......vfevkaTagDthlGGedfDealvehlveefkkkegi...d.....lskdkkal 253
                 +        k++  lvyD+G g++++ +l+++     +G        ++v +Ta D +lGG+   + +ve +v++f  ++++   d     ++kd k +
  KKY18857.1 232 TFpsisdgaKPEYHLVYDMGAGSTTATVLKFQgrsikEGrsnkpiqEVQVMGTAWDRTLGGDALNQLIVEDMVQKFVGTSKMkalDvtstnVKKDGKTM 330
                 878889999********************87543343776666555689**************************965544322242222268999*** PP

                 HHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEEEEEHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTT. CS
       HSP70 254 qrlkeaaekaKkeLSsskqteinleietvdedgkdlseklsRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg. 351
                  rl ++aek+++ LS+  +t+++ ++e ++ ++++++ klsR +fe+l++d  +r+  p++kal+ a+l+ +++++v+l GG+ R P  q+ ++ + g 
  KKY18857.1 331 ARLWKDAEKMRQVLSA--NTQTSTSLEGLFYEDVNFKYKLSRTEFETLAADHASRVGVPIQKALEAAQLSLSDLESVILHGGAVRTPFAQKELELAAGg 427
                 ****************..666667778888889*************************************************************99997 PP

                 .CHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCCEEEEBESS-EEEEETTTEEEEEESTTCBSS CS
       HSP70 352 .kepsktvnpDeavaiGAAvqagvlsgeeevkdllllDvtpLslgietlggvmtkliernttip 414
                   + +++vn+Dea a+GA + a+  s++++vkd+   D +   + ++ ++ +  k  ++    p
  KKY18857.1 428 sGKIRTNVNADEAAALGAGFRAAGISPSFRVKDIRAYDASG--FAVSFKWTSDRKERQQKIFTP 489
                 77899*********************************999..777777776555544444444 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 6.9e-07
                 HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..GGGSTHHHH......HHHHHHHHHHHCHTTSSCHHHHHHHHHHHHHHHHHHHHH CS
       HSP70 509 kmvkdaeesaeedkkkkeaieakneaeelvyslekkleee..aekvseaek......ekvesaieeLkeeleeeekeeieakteelkkvvekiaek 596
                 k++    +++++d++++ + ea n++e++ y++++ le+e  +  + ++++      ek+++  ++L+ e+ +++ +e++ak+++l+++v ++ ++
  KKY18857.1 668 KIQARLSSFDASDRSRRLRSEALNNLEAFTYRARDYLEDEefK--AFSSDAirgtlqEKLSEISDWLYGEGLDASLNELKAKLKDLRTLVDPVLKR 761
                 4677788999*****************************9542..3333333577779******************************99998876 PP

  == domain 3  score: -4.3 bits;  conditional E-value: 1.3
                 HHHSXXGGGSHHHH.HHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEE CS
       HSP70 240 kkegidlskdkkal.qrlkeaaekaKkeLSsskqteinleietvdedgkdlse 291
                  ++++  ++d+ +l + l  +a+++  e+S+  + +i+ + +t  ++gk+ ++
  KKY18857.1 891 AQSKLSSTDDPAVLaSDLDAKAKELSDEISALLRRKIKQPPKTSSSKGKKAKT 943
                 44444444444333123444444444444444444444444444444433333 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.9e-06    0.0055      86     166 ..     176     264 ..     157     289 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.9e-06
                 HTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT-........-TTSSS-EEEEEE-SS-EEEEEEETTE CS
    MreB_Mbl  86 kkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGagl........pveepsgnmvvdiGggttevavislgg 166
                 +  k l+ + vvi++Ps  t+ err ++ aa+ aG +   li++ la  i            + ++p+ ++v d+G+g+t  +v+ ++g
  KKY18857.1 176 AVGKGLKVSDVVITIPSFYTAAERRSLELAAELAGLKVLALISDGLAVGINYATsrtfpsisDGAKPEYHLVYDMGAGSTTATVLKFQG 264
                 4466788899************************************98886443122221113468999**************998876 PP

>> AbiEi_3_N  Transcriptional regulator, AbiEi antitoxin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   6.8e-05       0.2      20      71 ..     729     780 ..     718     786 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.8e-05
   AbiEi_3_N  20 aswLaeqGisadlakkyvksgwLerlatGvyarpgdelswegvvasLqrqlk 71 
                 + wL  +G++a+l +  +k + L++l   v++r++++ + + +v  Lq+q++
  KKY18857.1 729 SDWLYGEGLDASLNELKAKLKDLRTLVDPVLKRKEENAKRDIAVERLQQQIE 780
                 78************************************************97 PP

>> DUF285  Mycoplasma protein of unknown function, DUF285
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   6.9e-05      0.21      51     118 ..     300     368 ..     291     382 .. 0.47

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.9e-05
      DUF285  51 VtnmssmFkeatsfnq.dissWdtsn.vtnmssmFkeaksfnqdisswnvskvtdmeemfeeakafnqdl 118
                 V++m + F ++++++  d+ s ++++  ++m +++k+a+++ q + s n+++ t++e +f+e  +f+ +l
  KKY18857.1 300 VEDMVQKFVGTSKMKAlDVTSTNVKKdGKTMARLWKDAEKMRQVL-SANTQTSTSLEGLFYEDVNFKYKL 368
                 444444444444444444444444331344444444444443333.334444444444444444444333 PP

>> REC1  Alpha helical recognition lobe domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3    0.0002       0.6       2      83 ..     724     805 ..     723     825 .. 0.67
   2 ?    1.8   1.1     0.062   1.8e+02      14      87 ..     866     948 ..     857     972 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0002
        REC1   2 klKkiiDeyhkkfideaLeslkldeeslqeflellekqkkedkekkelnkaekklrkeivkifkk..kekk.adekkkkykklfk 83 
                 kl +i D ++ + +d++L++lk++ ++l  +++ ++k+k e+++k+  + a ++l+++i+++ +   + k  +++++++ ++l +
  KKY18857.1 724 KLSEISDWLYGEGLDASLNELKAKLKDLRTLVDPVLKRK-EENAKR--DIAVERLQQQIESTKNMarVVKEqLEKAAAESSFLAS 805
                 6778999999*************************9874.333333..4445566666666555432222223444444445544 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.062
        REC1  14 fideaLeslkldeeslqeflellekqkke.......dkekkelnkaekklrkeivkifkkkekk..adekkkkykklfkkkll 87 
                 + ++ L+sl +  es ++ le  +  + +         ++ +l+ + k+l  ei+  ++ k+k+  ++ ++k+ k ++k+   
  KKY18857.1 866 YTESDLTSLTTAYESVSSWLEEKLAAQSKlsstddpAVLASDLDAKAKELSDEISALLRRKIKQppKTSSSKGKKAKTKASTK 948
                 56666777777777766666655554444677787866677777777777777777777766664422222222222222222 PP

>> CheZ  Chemotaxis phosphatase, CheZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.4     0.022        65      14      73 ..     744     806 ..     732     824 .. 0.56
   2 ?    6.3   1.8    0.0027       7.9      52     116 ..     890     954 ..     882     967 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.022
                 XXXXXXXXX..XX.XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        CheZ  14 Lhdalrelg..ldekllekaaeeipd.ardrLeyvielTeqAAertldavekalpladklkee 73 
                 L+  l++l+  +d+ l++k++++  d a +rL+  ie T++ A+ + +  eka++  + l++e
  KKY18857.1 744 LKAKLKDLRtlVDPVLKRKEENAKRDiAVERLQQQIESTKNMARVVKEQLEKAAAESSFLASE 806
                 334444444334433333333333333566666666666666666666666666666655555 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0027
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        CheZ  52 AAertldavekalpladklkeeakeleeewerllerelekeefrelvkeveaflkeveektealk 116
                 AA+  l+ +++ + la++l+++akel++e+++ll+r++++    + +k  +a +k +++++++++
  KKY18857.1 890 AAQSKLSSTDDPAVLASDLDAKAKELSDEISALLRRKIKQPPKTSSSKGKKAKTKASTKSSSTTD 954
                 999**********************************9977755555555555555544444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (973 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1603  (0.0894082); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.52
# Mc/sec: 5584.84
//
Query:       KKY18858.1  [L=320]
Description: hypothetical protein UCRPC4_g04755 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-23   82.1   0.5    2.6e-22   80.2   0.0    2.2  2  RNR_inhib  Ribonucleotide reductase inhibitor


Domain annotation for each model (and alignments):
>> RNR_inhib  Ribonucleotide reductase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   1.4e-26   2.6e-22       1     105 [.      64     160 ..      64     162 .. 0.75
   2 ?   -1.6   0.0      0.39     7e+03      79     100 ..     218     238 ..     200     248 .. 0.61

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 1.4e-26
   RNR_inhib   1 sLlsVGmRVRKsVpeGYktgsvysafklwsdkstakksksstsssasaasanrellpfcGinkvgglavqseeeaspat.eeenaavddadaeslpplt 98 
                 sLl+VGmR+RKsVpeGYkt      ++l s+  t ++       ++s++++++el+pfcG++kvgglavq+++++  a+ + +++ + +a++++ p ++
  KKY18858.1  64 SLLTVGMRIRKSVPEGYKTILH---KQLISQPCTLSS-------NSSPSTSYTELAPFCGLHKVGGLAVQPTPNPGGAYlSAYSSITLSAAEQEDPFSS 152
                 7******************993...333322222222.......22367889**********************9999976666777777777777644 PP

   RNR_inhib  99 .ssqesve 105
                  ssqes +
  KKY18858.1 153 pSSQESAA 160
                 59999975 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.39
   RNR_inhib  79 t.eeenaavddadaeslppltss 100
                 +  ++  + d ++ +s pp  ss
  KKY18858.1 218 YpFSHTRMPDLNTLMSSPP--SS 238
                 1456677788888888888..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.50
# Mc/sec: 1937.66
//
Query:       KKY18859.1  [L=158]
Description: hypothetical protein UCRPC4_g04756 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1030.51
//
Query:       KKY18860.1  [L=359]
Description: putative integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2272.59
//
Query:       KKY18861.1  [L=349]
Description: putative protein dml1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-77  259.4   0.0    1.9e-77  259.0   0.0    1.1  1  Tubulin_3        Tubulin domain
    0.00058   20.1   0.0     0.0009   19.5   0.0    1.2  1  Tubulin          Tubulin/FtsZ family, GTPase domain
     0.0017   18.7   0.0     0.0032   17.8   0.0    1.5  1  Misat_Tub_SegII  Misato Segment II tubulin-like domain
     0.0025   17.7   0.1     0.0074   16.1   0.0    1.7  2  TFCD_C           Tubulin folding cofactor D C terminal


Domain annotation for each model (and alignments):
>> Tubulin_3  Tubulin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.0   0.0   4.3e-81   1.9e-77       1     180 [.      53     237 ..      53     238 .. 0.92

  Alignments for each domain:
  == domain 1  score: 259.0 bits;  conditional E-value: 4.3e-81
   Tubulin_3   1 apkltsetvrywsdfnrvfyhPrsivqlneyelnskllpfedwsvGeeLfeeldkehdlldrdlrpfaeecdqlrglqvftgvddaWGGfaakylerlr 99 
                 ap lt+++vrywsdfnrvf+hP+sivqlneyelns++lpfe+w++Ge+Lf+++dke d+ldrdlrpfaeecdq+ +lq+ftg+ddaWGGfa++y++++r
  KKY18861.1  53 APPLTADSVRYWSDFNRVFFHPKSIVQLNEYELNSQILPFENWAAGEDLFRDIDKEVDILDRDLRPFAEECDQISALQIFTGADDAWGGFASSYIDNIR 151
                 699************************************************************************************************ PP

   Tubulin_3 100 deygkksilvWvlaleeklkkkkkaklerklkklnkarslkelseqaslyvPiak........ls.daeseWhtsaLlssalesvtlpsr 180
                 deygk s  +W+++lee++k++ +  +er l++ n ar+l+++++q+s+y+ ia+        ++  ++s+W+tsaL+ +a+es+t+p+r
  KKY18861.1 152 DEYGKVS--LWTFGLEENQKDRPR--RERLLRSENAARTLHSIASQSSAYIRIANpapiipsyVHlLQTSDWYTSALTGMAIESLTFPTR 237
                 *****88..5*****999987665..6899***********************974444332222246999*****************99 PP

>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     2e-07    0.0009      97     189 ..     107     202 ..      71     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2e-07
                 HHHHHTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--....GG.G-HHHHHHHHHHHHHHHHT-SEEEEEEH CS
     Tubulin  97 eaaeeileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPs....efsevvvepynailalkelieesdavividN 189
                 +  + +++ +r  +e+cd++++++i+++     G G+++  ++ +++ey k+ + t+    +      +e  ++++na+ +l+++ ++s a+i i N
  KKY18861.1 107 KEVDILDRDLRPFAEECDQISALQIFTGADDAWG-GFASSYIDNIRDEYGKVSLWTFGLEENqkdrPRRERLLRSENAARTLHSIASQSSAYIRIAN 202
                 56677888899999******************99.888888899*************9999976664458999********************9999 PP

>> Misat_Tub_SegII  Misato Segment II tubulin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     7e-07    0.0032      70     117 ..       4      48 ..       1      49 [. 0.93

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7e-07
  Misat_Tub_SegII  70 gslrkegelyeekeeeeseeseaatwdgklevqkqepvekseyqksLd 117
                      ++l+ +++lye   +++++   + +wdg+++ ++q+ ++ ++yq+sL+
       KKY18861.1   4 RHLHLYNALYE---ASQDAGLVQGLWDGNTVAHRQPTIPAHQYQQSLE 48 
                      789999*****...89999***************************97 PP

>> TFCD_C  Tubulin folding cofactor D C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.51   2.3e+03      27      69 ..      68     104 ..      59     107 .. 0.76
   2 !   16.1   0.0   1.6e-06    0.0074      15      89 ..     147     229 ..     143     276 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.51
      TFCD_C  27 qrllhndpakipsiphreelekifpeeeeedlnwnspsevfpr 69 
                  r++ + +  i +++++e   +i+p e     nw++ +++f+ 
  KKY18861.1  68 NRVFFHPKS-IVQLNEYELNSQILPFE-----NWAAGEDLFRD 104
                 566666655.57778888889999999.....99999999875 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 1.6e-06
      TFCD_C  15 iDrvRavAgkvlqrllhndpakipsiphreelekifpee.........eeedlnwnspsevfprlvqLLqlpeyresvleGlvv 89 
                 iD++R + gkv +  +  ++++ ++ p+re+l++  +           +++ ++ ++p+ ++p  v+LLq +++ +s l+G+ +
  KKY18861.1 147 IDNIRDEYGKVSLWTFGLEENQ-KDRPRRERLLRSENAArtlhsiasqSSAYIRIANPAPIIPSYVHLLQTSDWYTSALTGMAI 229
                 9**********99999999996.999999999666633334555554456677999*************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2519.65
//
Query:       KKY18862.1  [L=624]
Description: hypothetical protein UCRPC4_g04759 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.026   14.1   0.4      0.052   13.1   0.4    1.5  1  Ssu72            Ssu72-like protein


Domain annotation for each model (and alignments):
>> Ssu72  Ssu72-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   2.9e-06     0.052     113     182 ..     117     187 ..     101     225 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.9e-06
                 HHHHHHHHHS--SS-EEEEEEEE---SSHHHHHHHHHHHHHHHHHHHT-SS.HHHHHHHHHHH..HHHHHT- CS
       Ssu72 113 davvedllsreselnrpvhvinvdikDnheeAlvgakaileLakaleeaedeleeevkeilae..feektkk 182
                 ++++e+l+s ++++ +  hv   +ik ++++A  +++a+++L + l+ea++  ++++k+ +++  fe+++ +
  KKY18862.1 117 ESLMEELQSTKERQAHERHVYEKEIKRSRKDAFRAGSALVKLQEDLKEARS-ENRNLKSTIQKekFEKDKAR 187
                 57899*******************************************999.45556666653114444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2221  (0.123878); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.93u 0.31s 00:00:01.24 Elapsed: 00:00:00.50
# Mc/sec: 3760.19
//
Query:       KKY18863.1  [L=389]
Description: putative phosphatidic acid phosphatase beta [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-26   92.5   3.6    1.9e-26   92.5   3.6    1.9  3  PAP2      PAP2 superfamily
  ------ inclusion threshold ------
        1.3    8.6   6.9       0.92    9.0   1.2    2.2  2  BaxI_1    Bax inhibitor 1 like
        7.3    7.2   6.3        1.2    9.8   1.3    2.3  2  PAP2_C    PAP2 superfamily C-terminal


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.71   4.3e+03       6      28 ..      58      77 ..      49      87 .. 0.62
   2 ?   -3.1   0.1         1     6e+03      89      98 ..     107     116 ..      91     128 .. 0.55
   3 !   92.5   3.6   3.1e-30   1.9e-26       3     134 ..     139     294 ..     137     296 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.71
        PAP2  6 llalalaalltsvlKdlvgrpRP 28
                l++++l a+    l  ++ rp P
  KKY18863.1 58 LTMIILGAVG---LGIYMARPAP 77
                3333333333...5666666666 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1
        PAP2  89 lillllavlv 98 
                 ++++lla+l+
  KKY18863.1 107 WLAALLAALI 116
                 3333333332 PP

  == domain 3  score: 92.5 bits;  conditional E-value: 3.1e-30
        PAP2   3 lalllalalaalltsvlKdlvgrpRPfflaeetkldtqvstletses.................keakesfPSgHsafafalalllalllrrkrkkig. 83 
                 + ll++l++aa+++++lK+l+g +RP+fl++++++ +  +t  ++ +                 ++  esfPSgH+++afa++++l+l+l+ k k ++ 
  KKY18863.1 139 IGLLYSLITAAVFQVFLKWLIGGLRPHFLDVCKPNIPAGTTGTGNGFqgimydrtictgdesdiNDSLESFPSGHATAAFAGFVFLYLYLNAKLKVFSn 237
                 679***********************************988887777**************9999999999**************************** PP

        PAP2  84 ......lvllalillllavlvalsRlylgvHflsDvlaGlliGialaalayrlvqkk 134
                       +++++  ++l avl++ +  ++  H + D+laG++iG+++a+ ayr+v+ +
  KKY18863.1 238 yhpamwKLAAIYAPILGAVLIGGALTIDEFHNWYDILAGAIIGTMMAFSAYRMVYAS 294
                 ****************************************************99875 PP

>> BaxI_1  Bax inhibitor 1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.4     0.018     1e+02     138     180 ..     111     150 ..      97     157 .. 0.55
   2 ?    9.0   1.2   0.00015      0.92      77     125 ..     239     294 ..     204     297 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.018
      BaxI_1 138 vvaaligilllylvnlvlslfgvgeglrdgglgilfslvvivl 180
                 ++aali i+++ +v++ ++ f+    ++++++g+l sl+  ++
  KKY18863.1 111 LLAALIPIVVFLFVQIRVRSFWD---MNNATIGLLYSLITAAV 150
                 33344444444444444444433...66666888888876554 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00015
      BaxI_1  77 spa...lvllYAvleGlflGgislvfea....pgivvqAvlgTlgvfavmlvlYkt 125
                  pa   l+ +YA + G +l g +l++++      i + A++gT+++f +  ++Y++
  KKY18863.1 239 HPAmwkLAAIYAPILGAVLIGGALTIDEfhnwYDILAGAIIGTMMAFSAYRMVYAS 294
                 233456899***9999887666666666688999********************86 PP

>> PAP2_C  PAP2 superfamily C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3       1.6   9.4e+03      22      22 ..     125     125 ..     107     154 .. 0.50
   2 ?    9.8   1.3    0.0002       1.2       8      71 ..     211     287 ..     208     290 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.6
      PAP2_C  22 l 22 
                 +
  KKY18863.1 125 Q 125
                 2 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0002
      PAP2_C   8 SGHtvvltlavlfileyspkkla........ilkvillll....allglfliiasrkHYtvDVllglyittlvf.ll 71 
                 SGH+++ +  ++f+  y + kl+        + k+ +++     a+l+   + +  +H   D+l g++i t++    
  KKY18863.1 211 SGHATAAFAGFVFLYLYLNAKLKvfsnyhpaMWKLAAIYApilgAVLIGGALTIDEFHNWYDILAGAIIGTMMAfSA 287
                 8999999998888888888888888877777334443333000134444556899**************99986355 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2587.35
//
Query:       KKY18875.1  [L=472]
Description: putative amino acid permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-22   79.4  38.5    2.8e-22   79.0  38.5    1.1  1  Aa_trans  Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0  38.5   1.5e-26   2.8e-22       2     407 ..      47     449 ..      46     451 .. 0.83

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 1.5e-26
    Aa_trans   2 tssalsavlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlgyrllGpkg..kliidlailvqlfGvg 98 
                 t s+ +a++ l+   v   ++a +++++ lG+++G+i+++++++l ++t+l + k      +++++++  d+gy ++G++   + ++++++l +++  +
  KKY18875.1  47 TMSWQKAAWLLAGDQVCLAIMAQSWSLSVLGWVPGIITMVIAGILFWITSLTMHKFIM---KHPEIRDICDFGYYAFGRSRiaYGFTAFMLLANNILLI 142
                 78***************************************************99998...689**************976547788999999999988 PP

    Aa_trans  99 vsyliligdllpaifesffdtlllsnvyfilisaliiipLslipnlskLsylSllalvsslyy.ivilvlvvaelvklelkgvseetv.........kk 187
                   ++++ ++ l+++ +       l+ v+f++i++++ i++s  + l+++s++S++++ ++ ++ +++lv+  +e+ +l +++  + t            
  KKY18875.1 143 GFHILTGAKVLNTLSDH-----SLCTVIFSVITMIMGIVMSAPRTLHHVSFMSMFSAACMGIAiLLFLVFAGIEKAPLYGYNGNYPTDglvktyafpLA 236
                 88888888888888885.....89************************************876444444445555555554444443366887777767 PP

    Aa_trans 188 asklkglflaigiivFAftghavlleiqnelkdpskfkkmtkvlllsiilatvlyilvGlvGYltFGnevkgnillnlpkssilivivnlllvlhlils 286
                  ++  + ++a+ +i F ++ ++++++++ e++ p++f+   k+l +  +++++l+i+   +G+   G      ++ +l+  +  +  + +++v+  +l 
  KKY18875.1 237 GTTWVNCMNAVLNITFLWVPQILFPTFISEMERPQDFP---KSLAVLAAISAILFIVPPAIGFRYLGQYSTAPAFGSLGVVT--YKKASFAFVIVPTLV 330
                 77888999******************************...9************************9999999999998776..444444444433333 PP

    Aa_trans 287 f.plqlhplrqvvenllikkeavagasekeapkskllrlvirlllvvityliAlsvpslakvlslvGatsstplsfilPalfhlkliktekksleklvk 384
                 +  +++ +  +++   +     ++     ++   + ++  + +++ vi+ + A  +ps++++lsl+Ga + +++ fi+ a+ +  ++k ++ s   +  
  KKY18875.1 331 IgVIYANVSAKFIYSRVMG---QSRHAHSNTVIGWGVWAAVMTGIWVIAFIFAEVIPSMGDFLSLLGAAFDSFFGFIFFAVAYWQIYKRNLFSGAFRSV 426
                 2134455555555444432...34455677888888899999999999999****************************************99999888 PP

    Aa_trans 385 kkildlicivlglllvfyglavl 407
                  +++ ++++ +gl+l+  gl+++
  KKY18875.1 427 MTVIHVFVLLCGLFLLGPGLYAA 449
                 88999999999999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       984  (0.0548832); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.49
# Mc/sec: 2922.79
//
Query:       KKY18876.1  [L=130]
Description: putative 40s ribosomal protein s22 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-23   81.7   0.2      6e-23   81.2   0.2    1.3  1  Ribosomal_S8  Ribosomal protein S8


Domain annotation for each model (and alignments):
>> Ribosomal_S8  Ribosomal protein S8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.2   3.3e-27     6e-23       3     127 .]       7     130 .]       5     130 .] 0.84

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 3.3e-27
                   HHHHHHHHHHHHHTT-SEEEE.E--HHHHHHHHHHHHCTSEEEEEEE.CCCCCC..EEEEE-BSSS-SBSSSEEEE-SBTTC--EE-CCC---CGGG CS
  Ribosomal_S8   3 iadmltrirNaekakkeevev.pasklkeeilkvLkeeGyikdfeve.eekkkk..ikielkynkkkksvikklkrvskpgrrvYakvkelpkvlng 95 
                   +ad+l +i+Naeka+k++v + p+sk++ + l+v++++Gyi +fe   ++++ k  i++++++nk  ++vi+   +v+   ++ ++ vk lp+  + 
    KKY18876.1   7 LADALKTINNAEKAGKRQVLIrPSSKVIVKFLQVMQKHGYIGEFEEIdDHRNGKivIQLNGRINK--TGVINPRYNVQLRDLEKWV-VKLLPS--RQ 98 
                   8*********************************************8555555534555556655..9****88888887777444.445554..67 PP

                   TSEEEEEETTEEEEHHHHHHCT--EEEEEEEE CS
  Ribosomal_S8  96 lGiaivsTskGvmtdkeArkkkvGGevlayvw 127
                   +G ++++Ts+G+m ++eAr+k+v G+vl + +
    KKY18876.1  99 FGFIVLTTSAGIMDHEEARRKHVAGKVLGFFY 130
                   9***************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1036.40
//
Query:       KKY18877.1  [L=118]
Description: putative nicotinate-nucleotide diphosphorylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-28  100.1   0.1    1.3e-28   99.9   0.1    1.0  1  QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal


Domain annotation for each model (and alignments):
>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.1   7.3e-33   1.3e-28      52     155 ..       1     107 [.       1     114 [. 0.90

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 7.3e-33
                 SEEE-HHHHHHHSSHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHT-SEEEEES--HHHHHHHHHHHHHHSTT...SEEEEESS--TTTHHHHHCT CS
   QRPTase_C  52 mvlikdnhiaaagsiveavksvreavdkevkievevesleeleevleaeadiimLDnfsveelkkaveelkeknkr...vlievSGgvtlenveeyaks 147
                 m+++kdnhi+a gsi++av+++r++ ++++kieve++s++e++e++ea+adi+mLDnf+ + lk a+ ++ke+++    vl+e+SGg+t+ nv+ey + 
  KKY18877.1   1 MIMLKDNHIWANGSITKAVHAARAVGGFALKIEVECQSEAEADEAIEAGADIVMLDNFDGNGLKLAARSVKERWRGkkdVLLECSGGLTEFNVKEYVNN 99 
                 89**********************************************************9999887777666544455******************99 PP

                 T-SEEEEC CS
   QRPTase_C 148 gvdvisvg 155
                 ++++   g
  KKY18877.1 100 VMEYTMEG 107
                 98876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 814.12
//
Query:       KKY18878.1  [L=310]
Description: putative mitochondrial oxaloacetate transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-53  177.7   4.2    4.7e-19   68.1   0.1    3.0  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.1   2.6e-23   4.7e-19       6      94 ..       5      97 ..       2      99 .. 0.91
   2 !   63.4   0.2   7.6e-22   1.4e-17       5      95 ..     109     202 ..     105     204 .. 0.87
   3 !   46.6   0.1   1.3e-16   2.4e-12       6      93 ..     211     294 ..     207     297 .. 0.93

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 2.6e-23
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS....HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr  6 lkellaGglagavatlvttPldvvKtrlqtqkksskksksaa....ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94
                +  ++aGg+a+++a++v +P+++vK+rlq+q++ ++k++  +    +++ ++ i+++eG rgl+rG++++ + ++  ++ ++++ye ++ +l+
  KKY18878.1  5 TGAFIAGGIAACGAVTVSHPFETVKIRLQLQGELQTKNEAVKkyrgVWHGVRVILQNEGPRGLFRGIGVAYIYQVLLNGSRLGFYEPMRSTLT 97
                5679**************************9888887766667788****************************************9998876 PP

  == domain 2  score: 63.4 bits;  conditional E-value: 7.6e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS...STTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkks...skksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 +  ++++G+l+g++++ +  P+ +vKtrlq+ +     +++  +++++d l++iy++eG+rglyrG++++++r+   s++++ +y + kr l +
  KKY18878.1 109 LGVNIFSGALSGIMGAAAGSPFFLVKTRLQSYSPFlpvGTQHIYKNAWDGLSQIYRTEGVRGLYRGVGAACIRTGFGSSVQLPTYFFAKRRLVR 202
                 56799**************************665533344445556*******************************************98875 PP

  == domain 3  score: 46.6 bits;  conditional E-value: 1.3e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   6 lkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                   +l+++ ++g +  +v++P d++  r+ +q ++       +++d+l+k++k+eGl++ y+G+ + l r+ p + l+++l e++ +l+
  KKY18878.1 211 PLHLASSTVSGFAVCCVMHPPDTIMARMYNQTGNLYG----GVFDCLYKTIKTEGLLAIYKGYFAHLARILPHTILTLTLAEQTSKLV 294
                 56899**************************999765....4******************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.34s 00:00:00.90 Elapsed: 00:00:00.52
# Mc/sec: 1778.54
//
Query:       KKY18879.1  [L=507]
Description: putative integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-70  235.6  14.1    8.5e-70  235.3  14.1    1.1  1  Lung_7-TM_R    Lung seven transmembrane receptor
  ------ inclusion threshold ------
      0.033   13.9   0.1       0.42   10.3   0.0    2.3  2  Lactamase_B_4  tRNase Z endonuclease
      0.084   12.4   0.0       0.15   11.6   0.0    1.3  1  DUF1188        Protein of unknown function (DUF1188)
        8.7    6.8   5.8        2.2    8.7   0.1    2.7  4  DUF2663        Protein of unknown function (DUF2663)


Domain annotation for each model (and alignments):
>> Lung_7-TM_R  Lung seven transmembrane receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.3  14.1   1.9e-73   8.5e-70       1     295 []     108     397 ..     108     397 .. 0.95

  Alignments for each domain:
  == domain 1  score: 235.3 bits;  conditional E-value: 1.9e-73
  Lung_7-TM_R   1 ikktGlYclifskcdeklsksksslklkvkvnwknpegyLsaseapllklylimalayvllgilWlfilakykkdilkiqkliaavivlkmlelafvy 98 
                  i ktG+Yc+ +           s+ ++ + v+++n +g L+a+++ +l++y+ +++ay+++g++W f++++++ dil++q++i+a i++ ++e+++++
   KKY18879.1 108 IRKTGFYCISTYAY--------SEKSYSAVVEFRNSYGELPAAQIAKLPFYGGLTIAYAVMGAFWAFLYFQNRSDILPVQNYITATIIFLVVEQLMTW 197
                  689*******8844........445699********************************************************************** PP

  Lung_7-TM_R  99 ieYatinskGss..ievlavlasilsalkktlsrlliliislGygivkpkLgdllkkvlllglllfvlaevlelvresseesessakllkvllflipl 194
                    Y++ n +G++   +++++++ il+a +++ls++l+li+++Gyg+vkp+Lg+++  v +l+ + fv+  v + v  ++ + e+ +    vll+++pl
   KKY18879.1 198 GFYDFQNRNGFNagAKAFMIVVAILNAGRNSLSFFLLLIVCMGYGVVKPSLGRTMIWVRGLAFAHFVFG-VIYAVASLAVTPETAG--PLVLLVILPL 292
                  ***********999******************************************************9.5666666777777764..58******** PP

  Lung_7-TM_R 195 alldlffvvwifrsLqktlrdlklkrnlvklklYrkftvvlvisvvasviivlvekill...ktvdsvekqWkeeWlitafw.elltlvllvviaylw 288
                  a++ ++f+vw++ sL+ t++dl  +++ vk+ +Yr+++  ++ s+++++ + +++++++   +  d v+k+W+++W++ + w +l++++ +  iaylw
   KKY18879.1 293 AGTLTAFYVWTLNSLNLTMKDLIDRKQKVKAMMYRRLWWCILGSIMVIFGFFFINSFAFagsSDADFVPKHWQTRWFVLDGWlNLVYFFDIAFIAYLW 390
                  **********************************************************9999999********************************* PP

  Lung_7-TM_R 289 rPsqnnq 295
                  rP+ nn+
   KKY18879.1 391 RPTANNR 397
                  *****95 PP

>> Lactamase_B_4  tRNase Z endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   9.3e-05      0.42       4      33 ..      20      52 ..      17      57 .. 0.85
   2 ?    0.7   0.1     0.095   4.3e+02       6      17 ..     276     287 ..     274     289 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.3e-05
  Lactamase_B_4  4 ttptsDtsg.PlllLqlds..krYlfGkvgEgt 33
                   + +++Dt+g Pl+ L + +  + Yl+G+ +Eg+
     KKY18879.1 20 MKASQDTEGdPLVSLIIFEwqDEYLIGRSPEGS 52
                   6789********9997765569**********7 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.095
  Lactamase_B_4   6 ptsDtsgPlllL 17 
                     t++t+gPl+lL
     KKY18879.1 276 VTPETAGPLVLL 287
                    699*******99 PP

>> DUF1188  Protein of unknown function (DUF1188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.3e-05      0.15     121     203 ..      42     124 ..      35     138 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.3e-05
                 SEEEEE--B-S.--HHHHHH--HHHHHGGTTTSEEEEEEETTS--SB--HHHHHHHHHHHHHHHHHTSTTEEEEEEBB--HHH CS
     DUF1188 121 kvlivEdPksegsDklikeanntekrlesveaekkgiLktkglesKTSGtmTLtvdvlrdalneaeelegvLYavpnleffEr 203
                 + li   P ++++ ++i++ +n ek+l+  +   + iL ++++e+ TS  + L+v+     + +    +   Y++++  + E+
  KKY18879.1  42 EYLIGRSPEGSTEKETICDLENVEKKLCEESELGSFILALNATEASTSPIISLAVRLKDPPAINYPIRKTGFYCISTYAYSEK 124
                 6778889*********************999999999*******************9988888888888889***99999997 PP

>> DUF2663  Protein of unknown function (DUF2663)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       1.1   5.1e+03      33      50 ..     163     178 ..     149     209 .. 0.44
   2 ?   -0.5   0.2      0.35   1.6e+03      48      71 ..     218     244 ..     178     251 .. 0.60
   3 ?   -2.4   0.0       1.3     6e+03      19      40 ..     252     273 ..     246     302 .. 0.59
   4 ?    8.7   0.1    0.0005       2.2       2      39 ..     311     348 ..     310     389 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.1
     DUF2663  33 fliyvlikssslssllsa 50 
                 f  ++  + ++ s +l +
  KKY18879.1 163 FWAFL--YFQNRSDILPV 178
                 22222..33333333333 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.35
     DUF2663  48 lsalle...ssvlllllllvallyvav 71 
                 + a+l+   +s++++lll+v + y +v
  KKY18879.1 218 VVAILNagrNSLSFFLLLIVCMGYGVV 244
                 333333122677888888888888766 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.3
     DUF2663  19 llllsllallvlllfliyvlik 40 
                 + +++ la++ +++++iy ++ 
  KKY18879.1 252 MIWVRGLAFAHFVFGVIYAVAS 273
                 5556666666667777776443 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.0005
     DUF2663   2 lqelikrKkkweklekrllllsllallvlllfliyvli 39 
                 +++li rK+k   +  r l++ +l+ +++++++ ++ +
  KKY18879.1 311 MKDLIDRKQKVKAMMYRRLWWCILGSIMVIFGFFFINS 348
                 5899********************99999999888833 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3576.95
//
Query:       KKY18880.1  [L=262]
Description: putative ph domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-35  121.6   0.2      2e-35  121.2   0.2    1.1  1  DUF4112   Domain of unknown function (DUF4112)


Domain annotation for each model (and alignments):
>> DUF4112  Domain of unknown function (DUF4112)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.2   0.2   1.1e-39     2e-35       2     105 .]      64     167 ..      63     167 .. 0.97

  Alignments for each domain:
  == domain 1  score: 121.2 bits;  conditional E-value: 1.1e-39
     DUF4112   2 lkkvrklayllDkalripgcglrfGldpiigliPvvGdvisallslylvleakkaeg.lpkslllrmlvnialDlliglvPvvGdlfdvlfkantrNaa 99 
                 l+kv+++ay+lD +l +++cg+rfG+ +iigliP++Gd +++ll+ +++ +ak++eg lp++++ rm++n ++D++ig+vP++Gd++d+++k+ntrNa 
  KKY18880.1  64 LNKVKRRAYRLDLSL-FNCCGIRFGWGAIIGLIPFAGDCVDLLLARMVIETAKQVEGgLPSQVVSRMYMNAIIDFVIGFVPFIGDIADAVYKCNTRNAV 161
                 89***********99.79**********************************999978***************************************** PP

     DUF4112 100 llekhl 105
                 llek+l
  KKY18880.1 162 LLEKEL 167
                 ***987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1692.14
//
Query:       KKY18881.1  [L=715]
Description: putative mrna-decapping enzyme 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-29   99.9   0.3    1.4e-28   99.0   0.3    1.5  1  DCP2      Dcp2, box A domain
    3.6e-17   62.6   0.0    6.4e-17   61.8   0.0    1.4  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> DCP2  Dcp2, box A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.3   1.6e-32   1.4e-28       1      83 []       5      88 ..       5      88 .. 0.96

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 1.6e-32
                HHHHHHHHHHTTTS-HHHHTSHHHHHHHHHHHHHHHHHTHHHHTTTS----HHHHHHHHHCCSCCCHHC.CCHCHHHHHHHHHH CS
        DCP2  1 eiLddlavrFilnlpeeeleslerlffqleeAhWfYeDfvreknpklpslklkeFaeklfekcpllkkl.kedvdeileefkeY 83
                ++Lddl+vrFi+nlp+eel s+er++fq+eeA+WfYeDf+r+ +p+lpsl l++F+  +f++cpl++ + ++ ++e++++f +Y
  KKY18881.1  5 DWLDDLCVRFIINLPHEELGSVERICFQIEEAQWFYEDFIRPLDPSLPSLPLRNFSLLIFQHCPLFAGFpQDFFSEAFSQFLAY 88
                68******************************************************************966678999****998 PP

>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0   7.2e-21   6.4e-17       3     119 ..      92     212 ..      90     222 .. 0.78

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 7.2e-21
                 EEEEEEEEEETTSE.EEEEEESSSSTTTEESSEEECBTTS.HHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEE.....EEEEEEEEE.EEEC CS
       NUDIX   3 rravgvvllnekge.vLlvrrskkpfpgWelPgGkvepgE.tpeeAArREleEEtGleaellellgrlhylapydgpygd.....eheilyvfl.eeve 93 
                  +  g++llne    vLlv+   k+ ++W++P Gk+ ++E ++ ++A+RE+ EEtG++ +   l+      + ++++y +     ++  lyvf+  + +
  KKY18881.1  92 VPVRGAILLNEAMDhVLLVKGW-KKNANWSFPRGKINKDEkDL-DCAVREVYEETGYDIKGAGLVP-----DESEAKYISvtireQDVGLYVFRsVPMD 183
                 567789999999666*******.99999************666.************9775555555.....3333444444455688888999999999 PP

                 SGCSSTSTTTEEEEEEEEHHHH...HHHH CS
       NUDIX  94 gelepndenevsevrwvpleel...lkek 119
                  + +p+ ++e+s+v+w++l++l   ++ k
  KKY18881.1 184 VDFQPKTRKEISKVKWYKLADLptfKRNK 212
                 999999****************5433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.51
# Mc/sec: 4195.94
//
Query:       KKY18882.1  [L=451]
Description: putative aminomethyl transferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00017   21.1   0.0    0.00031   20.2   0.0    1.3  1  GCV_T     Aminomethyltransferase folate-binding domain
  ------ inclusion threshold ------
      0.039   14.0   0.8       0.08   13.0   0.8    1.4  1  WYL       WYL domain
        1.2    9.5   4.9        2.1    8.8   4.9    1.4  1  PBP1_TM   Transmembrane domain of transglycosylase PBP1 at N-


Domain annotation for each model (and alignments):
>> GCV_T  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   5.3e-08   0.00031      51     132 ..      40     141 ..      35     156 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 5.3e-08
       GCV_T  51 ievsGpdaaalLqrlltndisklkp..........gkatytlllnedGgvidDlivarld..........edefllvvnaankekdlawlekaaekkdl 129
                 i ++G da+ +Lq l+t++++k +p           ka yt++ln +G++++D+++              +++fl+ v++++++ ++++l+k+  ++++
  KKY18882.1  40 ISLEGVDALPFLQGLVTANLTKSAPevryngglalSKAIYTAFLNAHGRILHDVLISPGFsltkedgkpsDESFLIEVDSNAAKSLFKHLKKHKLRSKF 138
                 6789*****************8888889998888899******************963222334446554579*******99**********9998777 PP

       GCV_T 130 dve 132
                 +++
  KKY18882.1 139 KMR 141
                 765 PP

>> WYL  WYL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.8   1.3e-05      0.08      58     142 ..     360     445 ..     352     447 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.3e-05
         WYL  58 tfrldRiselelldetfeppdfdlakylsksfgvfks.....pvevkvrfspeaarrvrerrfpdqkieeedddgsvrvelpvesleell 142
                 + rl+ +++++l+d+     +fd+++ ++ s++  ++     + evk+++ pe +r   er+++++k+ e ++d++++ e ++e++ee++
  KKY18882.1 360 LCRLEMLTDIRLTDTV---TPFDPEQRWKISWEAQDGggkigQLEVKAQV-PEWMRVRLERPHEEEKVAEDEEDDEYEDEEETEEEEEVR 445
                 5688888888888885...7899999999988888888898888888888.8888888899******99999999988888888877776 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.9   0.00035       2.1      26      58 ..     415     447 ..     395     451 .] 0.67

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00035
     PBP1_TM  26 srrrrrdddyddeyddeedDdddddeeeevprk 58 
                 +r   ++   +de dde++D+++ +eeeev r 
  KKY18882.1 415 ERPHEEEKVAEDEEDDEYEDEEETEEEEEVRRN 447
                 333333444566788999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.51
# Mc/sec: 2664.83
//
Query:       KKY18883.1  [L=221]
Description: hypothetical protein UCRPC4_g04728 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        7.8    5.9  12.3        9.1    5.7  12.3    1.2  1  DNA_pol_viral_N  DNA polymerase (viral) N-terminal domain


Domain annotation for each model (and alignments):
>> DNA_pol_viral_N  DNA polymerase (viral) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  12.3    0.0005       9.1     250     334 ..      99     185 ..      41     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0005
  DNA_pol_viral_N 250 ksssitsrlapttrktiGveqsyssrdasasvdsrarskssrlfssivrk..katgnyshlsyvtnsveatskrrsssGkavsards 334
                        +s t+ +++tt +t+ ve++ +    s svd+++ + ss   ss      + t   +   yvt s +a++   +++  av   +s
       KKY18883.1  99 TAASGTTTVSSTTTRTYTVEEAATGTADSDSVDTNGYAASSGTGSSDCDAavTVTETVQSTVYVTASSDAATADPATATSAVLVTSS 185
                      45778889999999*****99999999999***99999999888886654115566778888***********99999999976543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1434.36
//
Query:       KKY18884.1  [L=1078]
Description: putative ubiquitin fusion degradation protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.7e-208  693.6  10.0   4.3e-208  692.9  10.0    1.3  1  Ufd2P_core    Ubiquitin elongating factor core
    3.8e-29  100.7   0.7    1.3e-28   98.9   0.7    2.1  1  U-box         U-box domain
  ------ inclusion threshold ------
        6.8    7.3   8.3    1.4e+02    3.1   0.0    4.8  5  Syntaxin-6_N  Syntaxin 6, N-terminal
        9.4    6.3   8.4         15    5.6   0.2    3.5  3  P4Ha_N        Prolyl 4-Hydroxylase alpha-subunit, N-terminal 


Domain annotation for each model (and alignments):
>> Ufd2P_core  Ubiquitin elongating factor core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  692.9  10.0  9.6e-212  4.3e-208       1     622 [.     347     967 ..     347     970 .. 0.96

  Alignments for each domain:
  == domain 1  score: 692.9 bits;  conditional E-value: 9.6e-212
                 THHHHT--TTS....HHHHHHHT..TT-TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHT-GGGGSSS--GGGS--HHH CS
  Ufd2P_core   1 LGpllslsvlpdenepevakkyFsepktrsksdlkstysslrqelktiqenlveiiknllkassesRervlkwlakilnlNekrakiqvdpskvssdgf 99 
                 LGp +++s+l+     +v+k+yFs pkt ++++++ ++ slr++l+++q++l++ii++ll+as e+R rvl+w+a  +n+N+kr++ +vd+++vssdgf
  KKY18884.1 347 LGPYFQISPLQ----ADVTKQYFSAPKTLDPRRISDAQRSLRMTLQSHQTELLDIINQLLRASLEARGRVLDWFALTVNVNHKREQERVDRKTVSSDGF 441
                 9**********....569********************************************************************************* PP

                 HHHHHHHHHHHHGGGGSTT-TTGGGS-TTTTSS.-SSS--TT--BSSB-HHHHHHHHHHCTTS---HHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHH CS
  Ufd2P_core 100 mlNllavLlrLcepfldatfskidkidpnylllpskrldlkdetrlnadeeeveefyeqkekekpnFiteiFfltlkalhlglkpaisefkrllqelkr 198
                 m+N++ +L +Lcepf+da+fsk+d+id++yl++ s+r+d+++ t+lnad +++e+fy +k + + nFiteiFfltl a+h+g+++a+  +k+l +elk+
  KKY18884.1 442 MINITTILDQLCEPFMDASFSKLDRIDVDYLRR-SPRVDIHETTKLNADHATSEAFYGNKVTGTDNFITEIFFLTLEAHHYGIGAAHTALKNLDKELKH 539
                 *******************************77.***********************77777799********************************** PP

                 HHHHHHHHTT-..........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHSTT--TTSS---S-SSHTS-TTGGG CS
  Ufd2P_core 199 lqdeleeleae..........aaqleeqlkklkkelekllseklaleavlldpellqellkFlrlvaawllrvadpknlkpkkklklPlpeespeqfkv 287
                 +q++l+++e +           +++e +lkk+k++l+k ls+k+al +vlld+++ +++++ +r+v++wl +++++ + +pk+ l+lPlpe  pe f++
  KKY18884.1 540 MQKSLDQFELDrhkfvnnpahLQAFETTLKKYKDQLDKGLSYKFALSGVLLDETIETRIMQTMRYVIVWLFKLVTEGT-YPKENLSLPLPESEPETFRC 637
                 ******9998899********999**************************************************6444.69999*************** PP

                 SBTHHHHHHHHHHHHHTTSTT-TTTT.-TTH..HHHHHHHHHHHH-TTS---HHHHHHHHHHHHHCCS--TT..--TTHHHHHH-HHHHCCHHHHHHHH CS
  Ufd2P_core 288 lPeffledivdfllfllrlkpkvlesllssldldeliefiivflrsseyiknphlraklvevlfkgslplse..kgalkklleshelakkhLlkaLlkf 384
                 lPe++ledi+d l f++ + p++l s  ++   de++ f+i+flr+s yiknp l+aklv++lf+g+  +++  + +l++l +s ++a+k+Ll++Llk+
  KKY18884.1 638 LPEYYLEDICDGLAFITYNLPHILSS--TQ--SDEVVMFCITFLRNSGYIKNPGLKAKLVSILFRGTFAWRSgaRPVLAELYNSLQFATKYLLHSLLKA 732
                 *****************998888888..55..5**********************************6666654559********************** PP

                 HHHCCCT-SSSSSTCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---....-----HHH CS
  Ufd2P_core 385 YidvEktgqssqFydKfniRyniseilkslwknesyrnqltklakeneelFvrFinlllNDvtflldealskLkeikelqeeledqeewsslseeerqe 483
                 +i+ E+ g+ + FydKfniRy+i++++k++w n+ y++ql++++k+n e+FvrF+nlllNDvt++lde++s++ +i+++q+el++++  s+++++ rqe
  KKY18884.1 733 FIEAEH-GSAHAFYDKFNIRYEIFQVIKYIWPNQVYKDQLRDESKTNVEFFVRFVNLLLNDVTYVLDESFSAFHTIHDVQQELNTSG--STMDQQLRQE 828
                 *****6.88**************************************************************************9544..6888999*** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGGCSHHHHHHHHHHHHHHHHHHHSHHHHT---SSGGGGT--HHHHHHHHHHHHHHCTT-HHHHH CS
  Ufd2P_core 484 keesleqlerqaksylqlanetvkllklltkeipepfltpeivdrlaamLnynLdqLvGpkcknLkVknpekynFrPkelLssiveiYlnLskeeeFvk 582
                 kee l+ ++++aksy+ql+netv +lkl+t ++ ++f++peiv+rla+mL+ynLd++vGpk++nLkV+n ++ynF+P++lL +++++YlnLs++++F+ 
  KKY18884.1 829 KEEALSAAQSKAKSYMQLTNETVAMLKLFTHALADSFTMPEIVQRLADMLDYNLDAMVGPKSSNLKVENLQEYNFNPRSLLGELIDVYLNLSSKPNFIL 927
                 *************************************************************************************************** PP

                 HHHH-TTT--HHHHHHHHHHHTTSTSSTHHHHHHHHHHHH CS
  Ufd2P_core 583 avakDgRsYkkelFekavrilkregllseeelekfkelaq 622
                 ava+DgRsYk+++F++a  ilk+ +l+ +eel+++++l  
  KKY18884.1 928 AVARDGRSYKPNNFDQATTILKKYSLKGPEELDSWEHLKA 967
                 ************************************9975 PP

>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.7     3e-32   1.3e-28       1      72 [.     986    1057 ..     986    1058 .. 0.98

  Alignments for each domain:
  == domain 1  score: 98.9 bits;  conditional E-value: 3e-32
                  SSGGGB-TTT-SB-SSEEEETTT.EEEEHHHHHHHHTT.SSB-TTT-SB--GGGSEE-HHHHHHHHHHHHHCT CS
       U-box    1 iPdefldpitlelmkdPvilpsg.vvvdrstiekhllsrdktdPftrepltqdqlipnlelKekIdefleekr 72  
                  iPdef dp++++lm dPvilp + v++drsti +hlls d++dPf+r+pl+ +++ipn+elK++I++f++e++
  KKY18884.1  986 IPDEFEDPLMFTLMEDPVILPTSrVTMDRSTIRSHLLS-DPNDPFNRQPLKIEDVIPNTELKARIESFIAERS 1057
                  8*************************************.******************************9975 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.038   1.7e+02      37      73 ..     147     180 ..     115     217 .. 0.84
   2 ?   -0.2   0.0      0.32   1.4e+03      40      60 ..     377     397 ..     350     444 .. 0.56
   3 ?    3.1   0.0     0.032   1.4e+02      47      96 ..     527     576 ..     522     577 .. 0.89
   4 ?    1.5   0.1     0.099   4.4e+02      40      82 ..     808     852 ..     775     866 .. 0.62
   5 ?   -2.6   0.1       1.9   8.6e+03      17      60 ..     944     986 ..     939     990 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.038
  Syntaxin-6_N  37 eeldetrteLrkalrsiewdledLeetvriveknpsk 73 
                     l+++r+eL+++ ++++  ++ Le+++    + ps+
    KKY18884.1 147 YYLSNLRSELENENKEMRISIDVLEQAI---MEAPSR 180
                   568999*********************9...334554 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.32
  Syntaxin-6_N  40 detrteLrkalrsiewdledL 60 
                   +++++ Lr +l+s +++l d+
    KKY18884.1 377 SDAQRSLRMTLQSHQTELLDI 397
                   444444444444444444333 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.032
  Syntaxin-6_N  47 rkalrsiewdledLeetvriveknpskfkidekelsrrrafveevreevk 96 
                   ++al++++++l+ ++++ +  e +++kf  +++ l+  +  +++ +++++
    KKY18884.1 527 HTALKNLDKELKHMQKSLDQFELDRHKFVNNPAHLQAFETTLKKYKDQLD 576
                   68999999999999999999999999999999999999999999998875 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.099
  Syntaxin-6_N  40 detrteLrkalrsiewdle.dLeetvriveknpsk.fkidekels 82 
                   ++ ++eL+++ ++++++l+ + ee+ ++++++ +  +++++++++
    KKY18884.1 808 HDVQQELNTSGSTMDQQLRqEKEEALSAAQSKAKSyMQLTNETVA 852
                   455556666666666665313444554444443333555555554 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 1.9
  Syntaxin-6_N  17 aeslyrrwerlledtss.stseeldetrteLrkalrsiewdledL 60 
                   a++++++++   + +++ ++ e l+ t +e ++a + +e+dl ++
    KKY18884.1 944 ATTILKKYSL--KGPEElDSWEHLKATFKEAKAADEAAEQDLGEI 986
                   5555555542..233344457788888888888888888888775 PP

>> P4Ha_N  Prolyl 4-Hydroxylase alpha-subunit, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.3      0.79   3.5e+03      28      60 ..      14      44 ..       6      45 .. 0.50
   2 ?    5.6   0.2    0.0035        15      25      66 ..     525     568 ..     517     578 .. 0.83
   3 ?    4.0   0.2      0.01        46      51     100 ..     793     842 ..     766     858 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.79
      P4Ha_N 28 kkleklkrfleeleeehesakedkeeylsnPln 60
                k+l+k+ +  ++ +ee   ++++  e++s+P +
  KKY18884.1 14 KRLAKIAQQQQQQREEA--QNQQGLEVVSSPSS 44
                34444444444333333..34455568888765 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0035
      P4Ha_N  25 eeekkleklkrfleeleeehesakedkeeylsnP..lnaFklik 66 
                 +    l++l + l+++++  ++ + d++++++nP  l+aF ++ 
  KKY18884.1 525 AAHTALKNLDKELKHMQKSLDQFELDRHKFVNNPahLQAFETTL 568
                 55677899999999999999999999999*****8888998765 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.01
      P4Ha_N  51 keeylsnPlnaFklikRltsdWeeleklleeseseelieqlealkkrkes 100
                    +l    +aF++i+ ++++ ++  + ++++ ++e  e l+a +++ +s
  KKY18884.1 793 VTYVLDESFSAFHTIHDVQQELNTSGSTMDQQLRQEKEEALSAAQSKAKS 842
                 455788899***********************999988888655555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1078 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1699  (0.0947627); expected 358.6 (0.02)
Passed bias filter:                      829  (0.0462379); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.52
# Mc/sec: 6282.60
//
Query:       KKY18885.1  [L=193]
Description: putative er associated chaperone [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-23   81.8   1.0    4.2e-23   81.3   1.0    1.3  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   1.0   2.3e-27   4.2e-23       2      63 .]      50     110 ..      49     110 .. 0.99

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 2.3e-27
                 HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63 
                 yYeiL ++k+as++eIkkaYrkl+l  HPDkn + + a+e+Fk +++A++vLsd++k+++YD
  KKY18885.1  50 YYEILALEKTASDAEIKKAYRKLSLLTHPDKN-GYEGADEAFKLVSRAFQVLSDSDKKSRYD 110
                 9*******************************.****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 1178.15
//
Query:       KKY18886.1  [L=1483]
Description: putative abc multidrug [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-44  151.1   0.0    5.1e-26   91.8   0.0    2.7  2  ABC_tran      ABC transporter
    5.3e-35  121.4  38.2      2e-29  103.1  12.3    2.5  2  ABC_membrane  ABC transporter transmembrane region
    3.2e-11   43.1   7.2     0.0014   18.1   0.0    4.3  4  SMC_N         RecF/RecN/SMC N terminal domain
    5.6e-10   39.5   7.7     0.0029   17.5   0.0    4.4  4  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    5.1e-07   29.3   3.2      0.011   15.5   0.1    2.7  2  AAA_29        P-loop containing region of AAA domain
    4.2e-05   23.8   0.5       0.24   11.7   0.0    3.5  3  AAA_22        AAA domain
    6.3e-05   22.9   1.8        0.2   11.6   0.1    2.4  2  RsgA_GTPase   RsgA GTPase
     0.0001   22.8   0.0       0.87    9.9   0.0    2.8  2  AAA_16        AAA ATPase domain
    0.00054   20.0   0.2          1    9.4   0.1    2.7  2  MMR_HSR1      50S ribosome-binding GTPase
     0.0067   16.9   1.5        2.3    8.7   0.3    2.4  2  AAA_23        AAA domain
     0.0073   16.2   1.3        0.4   10.6   0.0    3.5  4  ATPase_2      ATPase domain predominantly from Archaea
     0.0085   15.8   0.2        1.2    8.8   0.0    2.2  2  AAA_15        AAA ATPase domain
  ------ inclusion threshold ------
      0.018   15.2   0.1        8.7    6.5   0.0    2.9  2  AAA_33        AAA domain
      0.022   14.5   0.7          1    9.0   0.0    3.0  3  AAA_24        AAA domain
      0.024   14.2   1.8        2.9    7.4   0.6    2.4  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
      0.033   14.7   0.0        8.5    6.9   0.0    2.6  2  AAA_18        AAA domain
       0.04   14.1   0.1         15    5.8   0.0    3.1  2  Roc           Ras of Complex, Roc, domain of DAPkinase
      0.053   13.2   0.5         10    5.8   0.0    2.9  3  AAA_30        AAA domain
      0.068   12.4   3.9         10    5.2   0.2    3.6  3  NB-ARC        NB-ARC domain
      0.068   13.6   0.3         17    5.8   0.0    2.7  2  RNA_helicase  RNA helicase
      0.088   12.3   0.0        3.8    7.0   0.0    2.4  2  GTP_EFTU      Elongation factor Tu GTP binding domain
       0.11   12.1   0.1         10    5.6   0.0    2.3  2  AAA_7         P-loop containing dynein motor region
       0.12   12.0   0.0         13    5.4   0.0    2.4  2  ATP-synt_ab   ATP synthase alpha/beta family, nucleotide-bind
       0.13   12.5   1.6        3.2    8.1   0.5    3.1  2  SbcCD_C       Putative exonuclease SbcCD, C subunit
       0.15   12.1   7.2       0.14   12.2   0.6    2.8  2  DUF87         Helicase HerA, central domain
       0.16   12.0   6.1        2.1    8.4   0.6    2.5  2  Dynamin_N     Dynamin family
       0.22   11.5   0.4         52    3.8   0.0    3.4  3  AAA_5         AAA domain (dynein-related subfamily)
       0.23   10.4   1.3        1.7    7.4   0.1    2.2  2  AAA_10        AAA-like domain
       0.33   10.3   1.5        1.5    8.1   0.2    2.3  2  FtsK_SpoIIIE  FtsK/SpoIIIE family
       0.59   10.0   2.3         19    5.1   0.1    2.5  2  NACHT         NACHT domain
       0.62    8.1  14.1        1.6    6.8  14.1    1.6  1  UPF0182       Uncharacterised protein family (UPF0182)
       0.82    9.1   2.6        6.9    6.1   0.2    2.4  2  Pox_A32       Poxvirus A32 protein
        1.2    8.7   3.7         21    4.6   0.0    3.0  2  AAA_25        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0   6.7e-18   3.6e-15       1     135 [.     651     785 ..     651     787 .. 0.86
   2 !   91.8   0.0   9.4e-29   5.1e-26       1     137 []    1251    1412 ..    1251    1412 .. 0.89

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 6.7e-18
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHHST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsklg 93 
                 l++v++ +++g+ + i+G+ G GKStLlk l+g++   +G +             s+++e ++  q+p + + + +r+n       +++  + +++  g
  KKY18886.1 651 LQDVNVRVRNGTFTFIIGPIGGGKSTLLKSLLGETVSHKGFV------------YSSSAEAAFADQNPWIRNST-IRDNiiglsfFDQDFYDSVVDCCG 736
                 789***************************************............57899999999998887777.*******98633333555666666 PP

                 TGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 xxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  94 lke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEp 135
                 l++        ++t+v+s++ sLSgGqkqr++ ara+ ++++l++lD+ 
  KKY18886.1 737 LQGdidvmprGDETIVGSKGISLSGGQKQRLSFARAIYSRKSLIMLDDV 785
                 6666666666779**********************************85 PP

  == domain 2  score: 91.8 bits;  conditional E-value: 9.4e-29
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................. 79  
                  l+nv+lk+++gek++i G++G+GKS+Ll+ l++ l+ ++G+i +dg d++ +++++lr+++ v+pqep + +++  r n                  
  KKY18886.1 1251 LSNVDLKISAGEKMGICGRSGSGKSSLLSSLLHILEFAKGSIIIDGIDISLIPRNILRQRLNVIPQEPYFIKGT-FRLNadpwsstspssspssdhl 1346
                  689****************************************************************9998888.7777899999999999888888 PP

                  ....HHHTCHHHHHHHSTTGG..TTCBGESTTS..GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  ....xxxxxxxxxxxxxxxxx..xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   80 ....esdeeiekalsklglke..lkdtvvkssp..ssLSgGqkqrvalarallkkpkllllDEpta 137 
                       s+e i +al+k+g+    l++  ++ ++   sLS Gqkq  +larall+++k+++lDE t+
  KKY18886.1 1347 phkpLSEEMIVTALTKVGIWPiiLAKGGLSAEMesDSLSLGQKQLFCLARALLRQSKIIILDEVTS 1412
                  887666666999999**999977344333333355****************************985 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9  17.9   5.2e-08   2.8e-05       5     269 ..     294     554 ..     290     559 .. 0.88
   2 !  103.1  12.3   3.7e-32     2e-29      19     271 ..     934    1180 ..     917    1223 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 5.2e-08
                   HHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHH CS
  ABC_membrane   5 illailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGell 101
                   ++  +l  +l++++p++l+  ++++++++++ +     +  ++++++++++ l+ l+++l n t   ++  l ++++ k + + +   d+ s+   +
    KKY18886.1 294 VIPRLLLIGLKFAQPFLLNTTTKFVSSSKSDAF--GWGLVGAYFIVYVGMATLTALYTHLQNRTITMIRGGLVSMIYAKTIDLCVTAVDESSS---V 385
                   5677888999*****************999999..99*************************************************9999876...5 PP

                   HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTT CS
  ABC_membrane 102 srltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgr 198
                   +++++d++++ ++l +   ++  ++ + ++++i+   +g    ++  +i+++i  v+a+++k +  ++k+  +a+  + s++ ++ls +r +k++g 
    KKY18886.1 386 TLMSSDIERITSSLIYMNDTWAAFIEIGLAIFILERSIGLA-CIAPAIITFVITGVTAWVSKYSVVAQKRWVDAIQTRISFTGQMLSSMRSIKLLGL 481
                   669********************999999999999988886.57788899999******************************************** PP

                   HHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHH CS
  ABC_membrane 199 eeyflekfekal...eeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfai 269
                    ++++   ++ +    ++ ++ ++  +++ l++  +  l+ l++++++++++++  + +l+  ++++ ls++++
    KKY18886.1 482 SNIVQALTQDLRiaeVDNAQSFRWFFTFRVLMGNLSPTLSPLATFAIFVISASMTGR-TLNTAEAFTSLSIISL 554
                   998877766655111566677788888888999999999999999999999999966.7888886777776665 PP

  == domain 2  score: 103.1 bits;  conditional E-value: 3.7e-32
                    HHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHH CS
  ABC_membrane   19 plvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnv.tgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvsklr 112 
                     lv +++ + ++ +g+      ++++ l+ +++++++++  l  ++++  +  ++s+ l++ l++++ r+p+sff ++++G+l+sr++ d+s ++
    KKY18886.1  934 ELVVKYWAEAVSRHGNKVN---ALFMGLYGAMAVFSLASICLALWIFILrIIPKTSSNLHALLLRAVVRAPLSFFTRTDTGDLTSRFSQDLSIVD 1025
                    5788999999999988888...899999*******************666********************************************* PP

                    HHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHH CS
  ABC_membrane  113 dglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfe 207 
                      l+ + +     ++ +++++++++++   ++ ++ ++ +++  +++v+ +++++++  + +a a+++s ++Eslsg+ t++a+g+ e+f+   +
    KKY18886.1 1026 FELPLFALETAFLVFYVLVTFVLILLSAGEFAAIVPFLGFVLWALTIVYLRTSRQMRLLDLEAKAPLYSQFQESLSGLATIRAYGWAEQFRLDNQ 1120
                    *********************************************************************************************** PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHH CS
  ABC_membrane  208 kaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailf 271 
                      l+e +k  +    ++++l ++++l++ ++ ++ + + ++l   ++l++g   v l+l++i++
    KKY18886.1 1121 TFLDESQKPFYLLYCVQRWLAVVLDLVIAALAVVLMILIVVLH--HKLNPGF--VALALLNIMS 1180
                    ***************************9999999988777777..6688888..6666666655 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.2    0.0028       1.5      25      50 ..     662     684 ..     652     691 .. 0.84
   2 !    7.6   0.0    0.0041       2.2     136     179 ..     758     797 ..     708     806 .. 0.87
   3 !    9.6   0.3     0.001      0.54      28      51 ..    1265    1288 ..    1251    1297 .. 0.85
   4 !   18.1   0.0   2.6e-06    0.0014     130     208 ..    1377    1451 ..    1345    1458 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0028
                 SEEEEEESTTSSHHHHHHHHHHHCTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGe 50 
                  ft+i+Gp G GKs ll ++   LGe
  KKY18886.1 662 TFTFIIGPIGGGKSTLLKSL---LGE 684
                 69****************99...665 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0041
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkv 179
                 +LSgG+k+     L fA   +++++l +lD++ + LD+   + +
  KKY18886.1 758 SLSGGQKQ----RLSFARAIYSRKSLIMLDDVFSGLDADTEEHI 797
                 69*****8....677999999****************9887766 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.001
                  EEEESTTSSHHHHHHHHHHHCTT. CS
                  xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   28 aivGpNGSGKsnlldAilFvLGer 51  
                   i G+ GSGKs+ll ++l++L ++
  KKY18886.1 1265 GICGRSGSGKSSLLSSLLHILEFA 1288
                  699****************99765 PP

  == domain 4  score: 18.1 bits;  conditional E-value: 2.6e-06
                  TT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  130 agiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadkl 208 
                  a++++++LS G+k+L  la        +++ + +lDe+ +  D k  + + ++++e+ k + +i +++r +++ + d++
  KKY18886.1 1377 AEMESDSLSLGQKQLFCLA----RALLRQSKIIILDEVTSSVDVKTDELMQRVIREEFKGCTIIAVAHRLNTIVDFDRV 1451
                  5677789********8776....45678999**************************************9998877765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.9     0.011       6.1       1      40 [.     663     703 ..     663     733 .. 0.68
   2 ?    6.3   0.0     0.013       7.1     237     297 ..     759     820 ..     708     823 .. 0.84
   3 !    9.9   0.4     0.001      0.57       3      26 ..    1265    1298 ..    1263    1340 .. 0.67
   4 !   17.5   0.0   5.3e-06    0.0029     226     293 ..    1373    1436 ..    1337    1447 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.011
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarl...drdvegltdelsggg 40 
                 ++++iGp g GKS+LL+ l     +    + v ++  e+    
  KKY18886.1 663 FTFIIGPIGGGKSTLLKSLL--GETvshKGFVYSSSAEAAFAD 703
                 89***************993..233455555555555555555 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.013
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll.ell...kelsrngaQviltTH 297
                 lS G+k+ l ++ a++++    sl+ +D++ +gL+    ++++ +++     l+r g+ vil+TH
  KKY18886.1 759 LSGGQKQRLSFARAIYSRK---SLIMLDDVFSGLDADTEEHIFnKVFgpeGMLRRLGTTVILVTH 820
                 599999999*******999...*********************99999998999999******** PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.001
      AAA_21    3 vliGpNgsGKSnLLdaldllarl..........d 26  
                  ++ G+ gsGKS+LL  l ++  +          d
  KKY18886.1 1265 GICGRSGSGKSSLLSSLLHILEFakgsiiidgiD 1298
                  799**************99987755533222222 PP

  == domain 4  score: 17.5 bits;  conditional E-value: 5.3e-06
      AAA_21  226 ngdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvi 293 
                   g   e  +++lS G+k+l++l+ allr+    +++++DE+ ++ +   + +l++ + +++ +g  +i
  KKY18886.1 1373 GGLSAEMESDSLSLGQKQLFCLARALLRQS---KIIILDEVTSSVDV-KTDELMQRVIREEFKGCTII 1436
                  55667888999*****************99...9*************.45555544433333344444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1     2e-05     0.011      16      40 ..     655     679 ..     648     699 .. 0.79
   2 !   13.4   0.4   8.8e-05     0.048      15      46 ..    1254    1285 ..    1250    1292 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2e-05
      AAA_29  16 tieidlkg.atlltGpsGsGKSTllD 40 
                  ++++ +g +t+++Gp+G GKSTll 
  KKY18886.1 655 NVRVR-NGtFTFIIGPIGGGKSTLLK 679
                 55665.5569**************95 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 8.8e-05
      AAA_29   15 htieidlkgatlltGpsGsGKSTllDAiqalL 46  
                   +++i+  + + + G+sGsGKS+ll ++  +L
  KKY18886.1 1254 VDLKISAGEKMGICGRSGSGKSSLLSSLLHIL 1285
                  567777556999************98877666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00044      0.24       4      30 ..     660     686 ..     656     703 .. 0.85
   2 !    7.9   0.0    0.0066       3.6      10      29 ..    1266    1285 ..    1262    1310 .. 0.90
   3 ?   -1.6   0.0       5.7   3.1e+03      83     103 ..    1395    1414 ..    1376    1438 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00044
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqld 30 
                 + ++++++G+ G GK+tll+ ll + +
  KKY18886.1 660 NGTFTFIIGPIGGGKSTLLKSLLGETV 686
                 7899*****************997765 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0066
      AAA_22   10 vtGesGtGKTtllrrlleql 29  
                  ++G sG+GK+ ll  ll+ l
  KKY18886.1 1266 ICGRSGSGKSSLLSSLLHIL 1285
                  8*************999876 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 5.7
      AAA_22   83 eqalraravielliiDEaqh.l 103 
                  ++al ++++  ++i+DE+   +
  KKY18886.1 1395 ARALLRQSK--IIILDEVTSsV 1414
                  567777777..9*****87655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   0.00036       0.2      90     126 ..     651     688 ..     640     698 .. 0.80
   2 !   10.1   0.2    0.0011      0.57     100     124 ..    1262    1286 ..    1231    1294 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00036
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallpelelk 126
                  l++++ ++++  +++++G+ G GKStL+++ll+e+  +
   KKY18886.1 651 LQDVNVRVRNgTFTFIIGPIGGGKSTLLKSLLGETVSH 688
                  5666667777688999****************997655 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0011
                   SEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  100 ktsvlvGqSGvGKStLinallpele 124 
                   + + ++G SG GKS+L+ +ll  le
   KKY18886.1 1262 EKMGICGRSGSGKSSLLSSLLHILE 1286
                   66679*************9987655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0019         1      18      53 ..     657     690 ..     649     717 .. 0.72
   2 !    9.9   0.0    0.0016      0.87      29      51 ..    1266    1288 ..    1250    1418 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0019
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralekdgg 53 
                 rvr g    ++++G+ G GKs+l+++ll +   ++g
  KKY18886.1 657 RVRNG--TFTFIIGPIGGGKSTLLKSLLGETVSHKG 690
                 66666..689**************999954444433 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0016
      AAA_16   29 lsGesGvGKsslvrellralekd 51  
                  + G sG+GKssl+ +ll+ le +
  KKY18886.1 1266 ICGRSGSGKSSLLSSLLHILEFA 1288
                  679**************877655 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0061       3.3       3      24 ..     665     686 ..     663     797 .. 0.81
   2 !    9.4   0.1    0.0019         1       2      21 ..    1264    1283 ..    1263    1295 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0061
                 EEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgeka 24 
                  i+G    GKStL+++l+ge++
  KKY18886.1 665 FIIGPIGGGKSTLLKSLLGETV 686
                 5899999***********9732 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0019
                  EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1    2 vaivGrpNvGKStLinaltg 21  
                  ++i Gr+ +GKS+L+++l+ 
  KKY18886.1 1264 MGICGRSGSGKSSLLSSLLH 1283
                  79***************985 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.3    0.0042       2.3      18      39 ..     660     681 ..     648     683 .. 0.79
   2 ?    6.8   0.1     0.016       8.8      23      39 ..    1265    1281 ..    1235    1289 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0042
      AAA_23  18 skgltlItGpNGaGKTTildAi 39 
                 +  +t I+Gp G GK+T+l  +
  KKY18886.1 660 NGTFTFIIGPIGGGKSTLLKSL 681
                 44689*************9765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.016
      AAA_23   23 lItGpNGaGKTTildAi 39  
                   I+G  G+GK+++l  +
  KKY18886.1 1265 GICGRSGSGKSSLLSSL 1281
                  69***********9766 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00074       0.4      20      59 ..     661     699 ..     651     709 .. 0.80
   2 ?   -2.5   0.0         7   3.8e+03      22     113 ..     798     894 ..     791     898 .. 0.50
   3 ?    1.3   0.0       0.5   2.7e+02      25      45 ..    1266    1286 ..    1259    1295 .. 0.84
   4 ?   -0.5   0.0       1.7   9.3e+02     116     137 ..    1401    1420 ..    1378    1431 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00074
    ATPase_2  20 neiyfiYGpegsGKtaLlkeiienledkdkyviyyialre 59 
                  ++ fi Gp+g GK++Llk ++ +  + +k  +y ++ + 
  KKY18886.1 661 GTFTFIIGPIGGGKSTLLKSLLGETVS-HKGFVYSSSAEA 699
                 6789****************9998844.566777776665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 7
    ATPase_2  22 iyfiYGpegs....GKtaLlkeiienledkdkyviyyialreesiskldefie.........eeeekkklekalgiavpkaeleeilk.....eksklv 102
                 +  ++Gpeg     G t +l   +  ++ ++++v+ +++    ++ +l++  +                      ++ ++ + +++++     +  +  
  KKY18886.1 798 FNKVFGPEGMlrrlGTTVILVTHAVHRLPYSDHVVVVDNGTIAEQGTLESL-RnsggyvqtlA------------TKSKEMKSKHVSSaekktRPHRPK 883
                 556778765333338888777777777788888888888777777766666.32444433322............222222222222221111122223 PP

    ATPase_2 103 fkaiellleki 113
                 +++i+++ +++
  KKY18886.1 884 DQKINNAENDL 894
                 44455554444 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.5
    ATPase_2   25 iYGpegsGKtaLlkeiienle 45  
                  i G+ gsGK++Ll  ++  le
  KKY18886.1 1266 ICGRSGSGKSSLLSSLLHILE 1286
                  78***********99887765 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 1.7
    ATPase_2  116 kgkkiiiiiDelqklidlglng 137 
                  +    iii+De+   +d++ ++
  KKY18886.1 1401 QS--KIIILDEVTSSVDVKTDE 1420
                  33..499*********999873 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.035        19      14      43 ..     651     681 ..     650     803 .. 0.86
   2 !    8.8   0.0    0.0021       1.2      17      65 ..    1256    1299 ..    1248    1349 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.035
      AAA_15  14 lkdveidlsee.ltvliGkNnsGKSsileal 43 
                 l+dv + + +  +t++iG+ + GKS++l+ l
  KKY18886.1 651 LQDVNVRVRNGtFTFIIGPIGGGKSTLLKSL 681
                 577778888888*****************98 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0021
      AAA_15   17 veidlseeltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedl 65  
                   +i+  e  + ++G+ +sGKSs+l  l  +l+      k  i i+  d+
  KKY18886.1 1256 LKISAGE-KMGICGRSGSGKSSLLSSLLHILEFA----KGSIIIDGIDI 1299
                  4555556.999****************9999866....45555555554 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.016       8.7       3      23 ..     665     685 ..     663     711 .. 0.84
   2 ?    5.3   0.0     0.038        21       4      21 ..    1266    1283 ..    1264    1312 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.016
      AAA_33   3 llvGlpGsGKstlaerllkkl 23 
                 +++G+ G GKstl+++ll ++
  KKY18886.1 665 FIIGPIGGGKSTLLKSLLGET 685
                 789**************9664 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.038
      AAA_33    4 lvGlpGsGKstlaerllk 21  
                  ++G +GsGKs l+ +ll 
  KKY18886.1 1266 ICGRSGSGKSSLLSSLLH 1283
                  69***********99975 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       5.8   3.2e+03      96     113 ..     320     337 ..     311     343 .. 0.80
   2 ?    1.9   0.4      0.29   1.6e+02       6      25 ..     665     684 ..     661     694 .. 0.85
   3 ?    9.0   0.0    0.0019         1       3      86 ..    1262    1422 ..    1260    1432 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.8
      AAA_24  96 edkgdgkGygelaeefrr 113
                 ++k+d++G+g++++ f+ 
  KKY18886.1 320 SSKSDAFGWGLVGAYFIV 337
                 57899********99975 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.29
      AAA_24   6 liyGpsgiGKTtlakelgpk 25 
                 +i+Gp g GK+tl+k+l  +
  KKY18886.1 665 FIIGPIGGGKSTLLKSLLGE 684
                 69*************99444 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0019
      AAA_24    3 lkiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdie................................................swed 51  
                   k+ i G sg+GK++l+++l     ++ + kG+  +d++++  i+                                                s e+
  KKY18886.1 1262 EKMGICGRSGSGKSSLLSSL---LHILEFAKGSIIIDGIDISLIPrnilrqrlnvipqepyfikgtfrlnadpwsstspssspssdhlphkplSEEM 1355
                  5899****************...77778888888888888887766655555555444444444444444333333333343333333333333333 PP

      AAA_24   52 fldevvel................................aaeladyktlviDtideleelclaevi 86  
                  ++ +++++                                +a l++ k++++D ++  ++ +++e++
  KKY18886.1 1356 IVTALTKVgiwpiilakgglsaemesdslslgqkqlfclaRALLRQSKIIILDEVTSSVDVKTDELM 1422
                  3333333377777777777777777777777777777776666777777777777766666666665 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.6    0.0053       2.9       3      23 ..     664     684 ..     662     692 .. 0.82
   2 ?    5.5   0.0     0.022        12       4      33 ..    1265    1294 ..    1262    1313 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0053
                 EEEEESTTCCHHHHHHHHHCT CS
        cobW   3 tvltGflGsGKTtLlnhllen 23 
                 t + G++G GK+tLl++ll +
  KKY18886.1 664 TFIIGPIGGGKSTLLKSLLGE 684
                 7899*************9943 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.022
                  EEEESTTCCHHHHHHHHHCT--SS-EEEEE CS
        cobW    4 vltGflGsGKTtLlnhllenraglklaviv 33  
                  +++G  GsGK++Ll++ll+  +  k  +i+
  KKY18886.1 1265 GICGRSGSGKSSLLSSLLHILEFAKGSIII 1294
                  7999*************9766666655555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.016       8.5       2      18 ..     665     681 ..     665     717 .. 0.74
   2 ?    4.8   0.0     0.071        38       2      25 ..    1265    1296 ..    1264    1332 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.016
      AAA_18   2 lltGtpGvGKttlakeL 18 
                 ++ G++G GK+tl k L
  KKY18886.1 665 FIIGPIGGGKSTLLKSL 681
                 699************99 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.071
      AAA_18    2 lltGtpGvGKttlakeLskrlgf........g 25  
                  +++G +G+GK++l   L   l+f        g
  KKY18886.1 1265 GICGRSGSGKSSLLSSLLHILEFakgsiiidG 1296
                  59***********9999665566664445540 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.065        35       4      27 ..     666     689 ..     664     724 .. 0.77
   2 ?    5.8   0.0     0.027        15       1      21 [.    1263    1283 ..    1263    1306 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.065
                 EESSTTSSHHHHHHCHCT-CCC-E CS
         Roc   4 lvGdsgvGKtsllkrfvedkfsek 27 
                 ++G  g GK++llk+++ +++s+k
  KKY18886.1 666 IIGPIGGGKSTLLKSLLGETVSHK 689
                 89****************999877 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.027
                  EEEEESSTTSSHHHHHHCHCT CS
         Roc    1 KvvlvGdsgvGKtsllkrfve 21  
                  K+ ++G sg+GK+sll+++++
  KKY18886.1 1263 KMGICGRSGSGKSSLLSSLLH 1283
                  7889************99876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.019        10      18      52 ..     661     693 ..     654     705 .. 0.73
   2 ?    3.9   0.0     0.069        38      21      50 ..    1264    1293 ..    1256    1296 .. 0.83
   3 ?   -1.4   0.0         3   1.6e+03      82     114 ..    1395    1427 ..    1371    1438 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.019
      AAA_30  18 drvavltGpAGtGKttalkal.reaweaaggrvigl 52 
                   ++++ Gp G GK+t+lk+l  e++ ++g   +++
  KKY18886.1 661 GTFTFIIGPIGGGKSTLLKSLlGETVSHKG---FVY 693
                 45899**************99677777777...333 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.069
      AAA_30   21 avltGpAGtGKttalkalreaweaaggrvi 50  
                  + + G+ G+GK+ +l++l +++e a+g++i
  KKY18886.1 1264 MGICGRSGSGKSSLLSSLLHILEFAKGSII 1293
                  5678**************999998876665 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 3
      AAA_30   82 grarlepgtllivDEagmvdtkqlaallkaaek 114 
                  +ra l++++++i DE+      ++++l++++ +
  KKY18886.1 1395 ARALLRQSKIIILDEVTSSVDVKTDELMQRVIR 1427
                  55678888*******877666666666666544 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2     0.019        10      22     114 ..     663     787 ..     654     799 .. 0.73
   2 ?    4.1   0.1      0.04        22      23      42 ..    1264    1283 ..    1253    1292 .. 0.86
   3 ?    0.9   0.0      0.38   2.1e+02      95     163 ..    1393    1465 ..    1360    1477 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.019
                 EEEEEESTTSSHHHHHHHHCCSHCCCCC.CBTEEEEE.................EEESXXHHHHHHHXXHHHHHCCCTTSSSS-STTS........... CS
      NB-ARC  22 vvalvGmgGvGKttlakqilnksdeveg.rFdsvawv.................vvsktdkseeiletilkeLslseddleekeeves........... 91 
                 + ++ G  G GK+tl+k+ l +  + +g  + s a                    ++ ++  ++  ++++   +l+  d++ ++ +++           
  KKY18886.1 663 FTFIIGPIGGGKSTLLKSLLGETVSHKGfVYSSSAEAafadqnpwirnstirdnIIGLSFFDQDFYDSVVDCCGLQ-GDIDVMPRGDEtivgskgisls 760
                 6688899999999999988888555555566666555677777777888888887777777777777777777776.6677777666667777777788 PP

                 ....HHHHHHHHCCCTTEEEEEEEE-S CS
      NB-ARC  92 ....lkrklvrlLltkrfllvlDDVwe 114
                           r++ ++++l++lDDV+ 
  KKY18886.1 761 ggqkQRLSFARAIYSRKSLIMLDDVFS 787
                 885444556789999999999999975 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.04
                  EEEEESTTSSHHHHHHHHCC CS
      NB-ARC   23 valvGmgGvGKttlakqiln 42  
                  +++ G+ G+GK+ l+++ l+
  KKY18886.1 1264 MGICGRSGSGKSSLLSSLLH 1283
                  99************998776 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.38
                  HHHHHCCCTTEEEEEEEE-SHHH..H......HHHHCHTTSEEE.EEESBCCCCCCS-S-EEEEEESS--HHH CS
      NB-ARC   95 klvrlLltkrfllvlDDVweeed..wdk.igvvlparenrlrvl.lTTRdeevanavsatsekievelLekde 163 
                   l r+Ll++  +++lD V  ++d   d+ ++ v+ ++ +++ ++ +  R + + ++          ++Le de
  KKY18886.1 1393 CLARALLRQSKIIILDEVTSSVDvkTDElMQRVIREEFKGCTIIaVAHRLNTIVDFDRVAVLGQGGKVLECDE 1465
                  57899*************9998866444144556666666665426667777766655554555555555555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.032        17       2      45 ..     665     703 ..     664     707 .. 0.74
   2 ?    5.0   0.1     0.058        31       3      22 ..    1266    1285 ..    1264    1297 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.032
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwd 45 
                   ++ Gp g GKStl k+L  +        +k+ vys ++e  f d
    KKY18886.1 665 FIIGPIGGGKSTLLKSLLGETV-----SHKGFVYSSSAEAAFAD 703
                   689*************655544.....45567777666666655 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.058
  RNA_helicase    3 lyGpsgeGKStlakeLakal 22  
                    ++G+sg GKS+l  +L + l
    KKY18886.1 1266 ICGRSGSGKSSLLSSLLHIL 1285
                    79***********9987765 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.007       3.8       7      79 ..     665     736 ..     660     739 .. 0.70
   2 ?    2.4   0.0      0.18        97       5      25 ..    1263    1283 ..    1262    1291 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.007
                 EEEESTTSSHHHHHHHHHHHTTSSCHHHHHH.HHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESS CS
    GTP_EFTU   7 giighvDhGKtTLtdrLlyktgaiskkgeka.eeervlDtlkeErergiTiksaaisleketkkylinliDtPG 79 
                  iig +  GK+TL+ +Ll +t   +        e+++ D+++  r+  i  ++   s++   +++  +++D+ G
  KKY18886.1 665 FIIGPIGGGKSTLLKSLLGETVSHKGFVYSSsAEAAFADQNPWIRNSTIRDNIIGLSFF--DQDFYDSVVDCCG 736
                 59****************77766554444333336677777776666666666666666..6777777777766 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.18
                  EEEEEESTTSSHHHHHHHHHH CS
    GTP_EFTU    5 nigiighvDhGKtTLtdrLly 25  
                  ++gi+g   +GK++L+ +Ll+
  KKY18886.1 1263 KMGICGRSGSGKSSLLSSLLH 1283
                  589****************97 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.062        34      30      57 ..     658     685 ..     653     701 .. 0.78
   2 ?    5.6   0.0     0.019        10      27      58 ..    1255    1286 ..    1250    1299 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.062
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkkl 57 
                 ++n+  ++++Gp G GK++++k+ll + 
  KKY18886.1 658 VRNGTFTFIIGPIGGGKSTLLKSLLGET 685
                 677788899**************76554 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.019
       AAA_7   27 elllknkkpvllvGptGtGKtviikdllkkld 58  
                  +l ++++ ++ ++G +G+GK++++++ll+ l+
  KKY18886.1 1255 DLKISAGEKMGICGRSGSGKSSLLSSLLHILE 1286
                  56678889999***************998776 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.055        30       9      48 ..     656     695 ..     648     958 .. 0.86
   2 ?    5.4   0.0     0.024        13      11      46 ..    1258    1294 ..    1253    1361 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.055
                  S-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   9 fpivqGqrtlipgafgvGktvisqslskqsnsddaiiyvg 48 
                  + + +G  t i+g  g Gk+++++sl+ ++ s++  +y  
   KKY18886.1 656 VRVRNGTFTFIIGPIGGGKSTLLKSLLGETVSHKGFVYSS 695
                  556789999*****************99988887888766 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.024
                   EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSS.EEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
  ATP-synt_ab   11 ivqGqrtlipgafgvGktvisqslskqsnsdd.aiiy 46  
                   i  G++++i g +g Gk+ +++sl++  + ++  ii+
   KKY18886.1 1258 ISAGEKMGICGRSGSGKSSLLSSLLHILEFAKgSIII 1294
                   678******************9999876666545554 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.5    0.0058       3.2      21      85 ..     747     798 ..     737     801 .. 0.68
   2 ?    1.6   0.0      0.59   3.2e+02      62      85 ..    1400    1423 ..    1373    1428 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0058
     SbcCD_C  21 gkekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatll 85 
                 g e+ + ++  +lSGG+kq l ++a     +a ys++       +l++LD+ Fs+lD+++ + ++
  KKY18886.1 747 GDETIVGSKGISLSGGQKQRL-SFA-----RAIYSRK-------SLIMLDDVFSGLDADTEEHIF 798
                 555555566667788888433.333.....3355553.......79************9987765 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.59
     SbcCD_C   62 palrlvfLDEAFsklDeesiatll 85  
                  ++ ++++LDE  s++D ++ + + 
  KKY18886.1 1400 RQSKIIILDEVTSSVDVKTDELMQ 1423
                  45679***********98766655 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.3      0.22   1.2e+02      28      51 ..     666     689 ..     664     693 .. 0.83
   2 ?   12.2   0.6   0.00026      0.14      22      57 ..    1260    1294 ..    1243    1299 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.22
       DUF87  28 ilgsTGsGKSntvavLleellekk 51 
                 i+g  G GKS++ ++Ll e ++ k
  KKY18886.1 666 IIGPIGGGKSTLLKSLLGETVSHK 689
                 566679************999655 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00026
       DUF87   22 vtrHlAilgsTGsGKSntvavLleellekkgatili 57  
                    + ++i g++GsGKS + ++Ll+ l  + +++i+i
  KKY18886.1 1260 AGEKMGICGRSGSGKSSLLSSLLHILE-FAKGSIII 1294
                  46789******************9877.98998887 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.6    0.0038       2.1       3      27 ..     666     690 ..     665     696 .. 0.88
   2 ?    5.7   0.6     0.025        14       3      20 ..    1266    1283 ..    1264    1294 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0038
                 EEEBTTTTHHHHHHHHHTS--S--- CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlgedilprg 27 
                 ++G    GKS++l +Llge + ++g
  KKY18886.1 666 IIGPIGGGKSTLLKSLLGETVSHKG 690
                 789999*************997765 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.025
                  EEEBTTTTHHHHHHHHHT CS
   Dynamin_N    3 vvGsqSsGKSSvlnaLlg 20  
                  ++G   sGKSS+l +Ll+
  KKY18886.1 1266 ICGRSGSGKSSLLSSLLH 1283
                  89**************97 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.21   1.1e+02       3      21 ..     665     683 ..     664     697 .. 0.84
   2 ?    3.8   0.0     0.096        52       5      24 ..    1267    1286 ..    1264    1314 .. 0.89
   3 ?    0.2   0.0       1.3   7.1e+02      64      77 ..    1400    1413 ..    1378    1457 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.21
                 EEE--SSSSHHHHHHHGGG CS
       AAA_5   3 lLvGppGtgKselaerlaa 21 
                 +++Gp G gKs+l ++l+ 
  KKY18886.1 665 FIIGPIGGGKSTLLKSLLG 683
                 79************99875 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.096
                  E--SSSSHHHHHHHGGGGBS CS
       AAA_5    5 vGppGtgKselaerlaaaln 24  
                   G +G+gKs+l  +l++ l+
  KKY18886.1 1267 CGRSGSGKSSLLSSLLHILE 1286
                  69**************9984 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.3
                  -G-SEEEEESGGG- CS
       AAA_5   64 regeilvlDEvera 77  
                  r+++i++lDEv+  
  KKY18886.1 1400 RQSKIIILDEVTSS 1413
                  48999999999954 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0032       1.7      11      41 ..     650     681 ..     643     691 .. 0.81
   2 ?    1.1   0.1      0.27   1.4e+02      24      54 ..    1264    1294 ..    1250    1300 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0032
      AAA_10  11 n.qevkgsktnasasliiGdlGnGKSvlakll 41 
                   q+v+  + n   ++iiG+ G+GKS l k l
  KKY18886.1 650 VlQDVNVRVRNGTFTFIIGPIGGGKSTLLKSL 681
                 557788888888889*************9987 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.27
      AAA_10   24 sliiGdlGnGKSvlakllvlyisllggkali 54  
                  + i G  G GKS l   l + + +++g ++i
  KKY18886.1 1264 MGICGRSGSGKSSLLSSLLHILEFAKGSIII 1294
                  4699******************999997654 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.74     4e+02      42      60 ..     664     682 ..     652     687 .. 0.87
   2 ?    8.1   0.2    0.0027       1.5      34      60 ..    1255    1282 ..    1240    1288 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.74
                   EEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  42 llvaGatgsGKStalntLi 60 
                   + ++G  g GKSt l++L+
    KKY18886.1 664 TFIIGPIGGGKSTLLKSLL 682
                   6799************997 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0027
                    EGGGS-..SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE   34 dlkkma.shllvaGatgsGKStalntLi 60  
                    dlk +a   + ++G++gsGKS  l +L+
    KKY18886.1 1255 DLKISAgEKMGICGRSGSGKSSLLSSLL 1282
                    55555555778*************9997 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2     0.077        42       3      21 ..     664     682 ..     662     692 .. 0.86
   2 ?    5.1   0.1     0.035        19       5      23 ..    1266    1284 ..    1263    1291 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.077
                 EEEEC-TTTCHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqkla 21 
                  ++ G+ G GK+tLl++l 
  KKY18886.1 664 TFIIGPIGGGKSTLLKSLL 682
                 5899************996 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.035
                  EEC-TTTCHHHHHHHHHHH CS
       NACHT    5 lqGeaGsGKTtLlqklala 23  
                  + G++GsGK+ Ll +l + 
  KKY18886.1 1266 ICGRSGSGKSSLLSSLLHI 1284
                  67************99875 PP

>> UPF0182  Uncharacterised protein family (UPF0182)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  14.1    0.0029       1.6      72     277 ..     951    1185 ..     900    1210 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0029
     UPF0182   72 l..........eklerlrealekklkllllaialvlsllvglvassqwekvllflnstsfgvkDpifgkDisFYvFklPflelllslllalvllali 158 
                  +           ++ +l++++   + ++l +i+   s l +l++ + ++  l f+ +t++g     f++D+s   F+lP++ l + +l++ vl++++
  KKY18886.1  951 VnalfmglygaMAVFSLASICLALWIFILRIIPKTSSNLHALLLRAVVRAPLSFFTRTDTGDLTSRFSQDLSIVDFELPLFALETAFLVFYVLVTFV 1047
                  04445555555455667777888888999999*************************************************9999999999888888 PP

     UPF0182  159 avllvyllsgesl...girl......................kfaelskaarrhlsvllallllllalsywLdryellyskrgvvtGagYtdvnavl 230 
                  ++ll    ++ ++   g  +                       +a l ++ +  ls l+++ +  +a ++ Ld+ + l ++++ ++        ++ 
  KKY18886.1 1048 LILLSAGEFAAIVpflG--FvlwaltivylrtsrqmrlldleAKAPLYSQFQESLSGLATIRAYGWAEQFRLDNQTFLDESQKPFYLL----YCVQR 1138
                  88777765555544442..1456778899999999999999866889999****************************9987766533....33444 PP

     UPF0182  231 paktil..avialvvavlllvaivlkklklplialallvllaillgvvl 277 
                  ++ ++l  +++al+v +++l+ ++ +kl+  ++alall ++++  +++l
  KKY18886.1 1139 WLAVVLdlVIAALAVVLMILIVVLHHKLNPGFVALALLNIMSF--NSIL 1185
                  4333330033333333333444456666666666666655555..3333 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2      0.17        94      18      45 ..     666     693 ..     656     698 .. 0.83
   2 ?    6.1   0.2     0.013       6.9      15      37 ..    1263    1285 ..    1256    1289 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.17
     Pox_A32  18 lvGgsGsGktvyLlsLlrtlvkkykhif 45 
                 ++G  G Gk + L+sLl + v++  +++
  KKY18886.1 666 IIGPIGGGKSTLLKSLLGETVSHKGFVY 693
                 89***************99887766665 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.013
     Pox_A32   15 rlalvGgsGsGktvyLlsLlrtl 37  
                  ++ + G sGsGk   L sLl+ l
  KKY18886.1 1263 KMGICGRSGSGKSSLLSSLLHIL 1285
                  799****************9765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.039        21      31      58 ..     659     686 ..     652     699 .. 0.84
   2 ?    3.8   0.1     0.068        37      30      54 ..    1258    1282 ..    1251    1290 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.039
      AAA_25  31 pagelallaGapgtGKttlaldlalava 58 
                 + g+++ ++G+ g GK+tl+ +l  +++
  KKY18886.1 659 RNGTFTFIIGPIGGGKSTLLKSLLGETV 686
                 6799***************999877665 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.068
      AAA_25   30 lpagelallaGapgtGKttlaldla 54  
                  + age   ++G++g+GK+ l+++l 
  KKY18886.1 1258 ISAGEKMGICGRSGSGKSSLLSSLL 1282
                  678888899************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       905  (0.0504769); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 1.16u 0.35s 00:00:01.50 Elapsed: 00:00:00.54
# Mc/sec: 8328.05
//
Query:       KKY18887.1  [L=566]
Description: putative thioredoxin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-42  145.4   3.3    2.8e-42  144.9   3.3    1.2  1  PUL            PUL domain
    2.5e-18   66.4   0.0    4.3e-18   65.6   0.0    1.4  1  Peptidase_C97  PPPDE putative peptidase domain
    2.7e-16   59.4   0.0    5.5e-16   58.4   0.0    1.4  1  Thioredoxin    Thioredoxin
    4.2e-05   23.5   0.0    7.4e-05   22.7   0.0    1.3  1  TraF           F plasmid transfer operon protein
     0.0031   17.5   0.0     0.0066   16.5   0.0    1.5  1  Thioredoxin_3  Thioredoxin domain
     0.0057   17.1   0.6      0.027   14.9   0.6    2.0  1  Thioredoxin_2  Thioredoxin-like domain
     0.0092   15.4   0.0      0.017   14.5   0.0    1.3  1  OST3_OST6      OST3 / OST6 family, transporter family
  ------ inclusion threshold ------
      0.092   12.5   0.0       0.16   11.7   0.0    1.3  1  MafB19-deam    MafB19-like deaminase


Domain annotation for each model (and alignments):
>> PUL  PUL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   3.3   1.2e-45   2.8e-42       4     271 ..     261     553 ..     259     562 .. 0.84

  Alignments for each domain:
  == domain 1  score: 144.9 bits;  conditional E-value: 1.2e-45
         PUL   4 ktyllfkk.anldkllkKlkelNakllsagqkdlalsd........eelatLeallaalessseatqlelllklltsWppedrfPalDLlRlllldprv 93 
                 k+++l+kk  +l+kl +K++++  +l+   ++ +++++        +  ++L ++l+al         ++l++ l+s p++++f+++DLlR+++ld+r+
  KKY18887.1 261 KQPVLYKKiLPLEKLAAKIGPV--ALEPPLSSIIDFTKerfasaapTASTSLPSALSAL--------PSFLVSKLSSIPDSSHFALVDLLRVAFLDSRI 349
                 79********************..33222345666666555555444444788888777........356799999*********************** PP

         PUL  94 sayfaeeegg.ktissllslllssals.ssapkalennrmlalRllaNlFssplgrelllskaeslletleslltssllssnknlrialatlllNlavl 190
                 s++fa e+    ++ +ll+  ++s +s +++p++l    +++l+ll+NlF+sp ++  ll++ ++l++++++++tssllssn++l  +++ l +Nl+++
  KKY18887.1 350 SGFFAAEDPShTMLLALLTPTSESLSSnKQPPYSL---HLTTLQLLCNLFTSPIYHSSLLTSPSKLHDQIITITTSSLLSSNSTLIHTASALTFNLTLT 445
                 ****9665545899999999776666677777999...************************************************************* PP

         PUL 191 lhk...............sk.delseedqvellaallealee............e..eedsEalyRlLvAlGtlvyaapegealadlarvldakeivkk 259
                 lh+               +    l+ e q++lla+lle l++            +  ++ +++l  lL++lG+l+y+++++++  dl+++++ake++++
  KKY18887.1 446 LHNqrfhlqqtpdnpppaHLrYTLPPESQISLLASLLESLQSfsttlssppttaQttTSTKDILQALLLSLGMLIYGSEPDSEIIDLCQAMNAKETIQE 544
                 ********999887765422344*****************999999998887762669*******************777777**************** PP

         PUL 260 akkkafekeprv 271
                 + k    +e+ +
  KKY18887.1 545 IGKC---NEKEF 553
                 *993...44444 PP

>> Peptidase_C97  PPPDE putative peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   1.9e-21   4.3e-18      73     149 ..       2      78 ..       1      80 [. 0.96

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 1.9e-21
                    EEEEEEEE---HHHHHHHHHHHHTT--GGG-BTTTB-HHHHHHHHHHHHHS----HHHHTHHHHHHTSHHHHHHTTT CS
  Peptidase_C97  73 esieigeTevteeevraileelsseytgdkYnLiskNCnhFtdelvdfLtgkkiPewinrlarivlstptvklllpm 149
                    ++i+ g+T+++ + +++++e+l++ yt+++Y+L+ +NCn+Ft++l  fL+gk iPe i  l++ +l+tp ++++ p+
     KKY18887.1   2 QIIHQGSTQLPMDVIEEYMESLAEVYTAESYDLFLHNCNNFTQDLSMFLVGKDIPEEIRTLPDRFLQTPLGAMMKPQ 78 
                    56788*******************************************************************99886 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   2.4e-19   5.5e-16      18     101 ..     154     236 ..     143     237 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 2.4e-19
                  SSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHHH CS
  Thioredoxin  18 kklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaafl 101
                  ++  ++ F+++ C++Ck + P +++la+e   k +l+kvd+++  d+a++y+v++ Pt+  f +g++v++ +ga+e ++l++++
   KKY18887.1 154 SRCAVIFFTSSTCAPCKIVYPAYDELAQEAGSKAVLIKVDINQAYDVASRYQVRATPTFTTFSKGERVNTWSGANE-AQLRSNI 236
                  5678999********************************************************************9.8888776 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   3.3e-08   7.4e-05     118     202 ..     143     218 ..     130     224 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 3.3e-08
        TraF 118 eekeaalkklakeygLlfFyrgkcpyceaqapilqafadkyglevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlvdpk 202
                 ++ e+ l ++ ++ + +fF +++c  c+   p ++++a++ g + + ++vd ++  ++++         r++v+ tP++  +++ 
  KKY18887.1 143 KQVEDLLGSATSRCAVIFFTSSTCAPCKIVYPAYDELAQEAGSKAVLIKVDINQAYDVAS---------RYQVRATPTFTTFSKG 218
                 6778899999******************************************99987777.........*********9888776 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.9e-06    0.0066       7      53 ..     163     212 ..     156     234 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.9e-06
                    SSSSTTCHHHHHHHHHHCHCCTCECEEECC...TTHHHH.HHCT-SSSSEE CS
  Thioredoxin_3   7 gpgCakCpklekavkeaaaekgikaevekv...tdfeei.ekygVmsvPal 53 
                    +++Ca C+ ++ a  e+a+e g ka ++kv   + ++ + ++y+V+++P+ 
     KKY18887.1 163 SSTCAPCKIVYPAYDELAQEAGSKAVLIKVdinQAYD-VaSRYQVRATPTF 212
                    678**********************777774424444.35*********85 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.6   1.2e-05     0.027       8     100 ..     157     228 ..     151     234 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.2e-05
  Thioredoxin_2   8 vlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgkeivarlpGyv 100
                     +++ft+++C  Ck  +   +el    +          +  kav i+ + +++         +++a +y+vr+tPt+ ++ + e+v+++ G+ 
     KKY18887.1 157 AVIFFTSSTCAPCKIVYPAYDEL---AQE---------AGSKAVLIKVDINQA---------YDVASRYQVRATPTFTTFSKGERVNTWSGAN 228
                    68899999999999988877776...333.........344444444444444.........5668**********88666555888888885 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   7.4e-06     0.017      33     109 ..     157     222 ..     135     246 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.4e-06
   OST3_OST6  33 vvvllTatspqfkCelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkgpk 109
                  v+++T++     C++C+ ++p ++ +a+   ++        + +kvd++++ dv ++++++  P +  f+  ++ +
  KKY18887.1 157 AVIFFTSS----TCAPCKIVYPAYDELAQEAGSK-------AVLIKVDINQAYDVASRYQVRATPTFTTFSKGERVN 222
                 67888887....7***************988777.......69***************************9855444 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.1e-05      0.16      54     114 ..     138     196 ..      91     206 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.1e-05
  MafB19-deam  54 EiaalqqAakklkskrlddatlyvtlepCdmCagaivqaglkklvygagnpkslnkLkvke 114
                   + +l+q  + l+s +   a+++ t  +C +C   iv+ +  +l++ ag +  l k+++++
   KKY18887.1 138 NVSSLKQVEDLLGSATSRCAVIFFTSSTCAPC--KIVYPAYDELAQEAGSKAVLIKVDINQ 196
                  479999**99**********************..6*************9666688888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.47
# Mc/sec: 3588.56
//
Query:       KKY18888.1  [L=824]
Description: putative cell division control protein cdc48 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-96  318.9   0.1      8e-47  159.0   0.0    2.7  2  AAA              ATPase family associated with various cellul
      6e-25   86.8   2.9    6.8e-13   48.2   0.3    2.9  2  AAA_lid_3        AAA+ lid domain
    1.9e-19   69.6   0.4    5.6e-19   68.1   0.4    1.9  1  CDC48_N          Cell division protein 48 (CDC48), N-terminal
    2.2e-14   53.9   0.1    1.1e-07   32.2   0.0    3.1  2  AAA_2            AAA domain (Cdc48 subfamily)
    6.2e-14   52.0   0.0    1.4e-05   24.9   0.0    3.3  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    4.6e-13   49.5   0.0    2.4e-05   24.5   0.0    3.4  3  AAA_33           AAA domain
    2.8e-11   44.1   0.0    0.00019   21.9   0.0    4.5  3  AAA_16           AAA ATPase domain
    7.3e-11   42.2   0.4    4.6e-05   23.4   0.1    3.8  2  AAA_5            AAA domain (dynein-related subfamily)
    2.9e-09   37.3   0.4      0.032   14.5   0.0    4.2  3  AAA_22           AAA domain
    3.4e-09   36.4   0.1     0.0016   17.7   0.0    2.8  2  TIP49            TIP49 P-loop domain
    9.9e-08   31.6   0.4     0.0069   15.8   0.0    2.6  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    2.4e-07   30.4   0.1    5.5e-07   29.3   0.1    1.6  1  CDC48_2          Cell division protein 48 (CDC48), domain 2
      3e-07   30.3   0.0       0.02   14.7   0.0    2.7  2  IstB_IS21        IstB-like ATP binding protein
    6.5e-07   29.9   0.0      0.029   14.9   0.0    2.9  2  AAA_18           AAA domain
    1.5e-06   27.7   0.4       0.83    9.0   0.0    3.5  3  ATPase           KaiC
    1.8e-06   28.3   0.0       0.03   14.7   0.0    2.9  2  RNA_helicase     RNA helicase
    1.9e-06   28.0   0.0      0.023   14.7   0.0    2.7  2  AAA_14           AAA domain
    2.3e-06   27.3   4.6       0.19   11.3   0.1    4.7  5  AAA_25           AAA domain
    2.7e-06   27.3   0.1    3.1e-05   23.9   0.0    2.5  2  Vps4_C           Vps4 C terminal oligomerisation domain
    5.9e-06   25.9   0.1      0.031   13.8   0.0    3.0  2  AAA_7            P-loop containing dynein motor region
      2e-05   24.9   0.0       0.18   12.0   0.0    2.8  2  AAA_28           AAA domain
      3e-05   23.3   0.0     0.0086   15.3   0.0    2.8  2  DUF815           Protein of unknown function (DUF815)
    3.8e-05   23.5   0.0       0.31   10.7   0.0    2.9  2  AAA_24           AAA domain
    4.2e-05   24.1   0.0       0.28   11.7   0.0    3.5  2  ABC_tran         ABC transporter
    5.6e-05   22.4   0.1      0.052   12.6   0.0    2.2  2  Parvo_NS1        Parvovirus non-structural protein NS1
    7.6e-05   22.5   0.1       0.75    9.5   0.0    3.2  2  Sigma54_activat  Sigma-54 interaction domain
    0.00016   21.2   0.4       0.69    9.3   0.1    2.5  2  PhoH             PhoH-like protein
     0.0002   21.3   0.0       0.71    9.7   0.0    2.9  2  Bac_DnaA         Bacterial dnaA  protein
    0.00022   21.7   0.1        0.9   10.0   0.0    3.3  2  AAA_17           AAA domain
    0.00041   20.4   0.0       0.12   12.3   0.0    2.5  2  ResIII           Type III restriction enzyme, res subunit
    0.00048   20.1   0.0       0.48   10.4   0.0    2.5  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    0.00056   19.8   0.0        1.6    8.6   0.0    2.6  2  AAA_3            ATPase family associated with various cellul
     0.0006   19.7   0.1       0.69    9.6   0.0    2.7  2  AAA_11           AAA domain
    0.00087   19.2   0.1       0.18   11.7   0.0    2.8  3  NACHT            NACHT domain
     0.0016   18.2   0.4        1.1    8.9   0.0    2.5  2  AAA_30           AAA domain
     0.0025   17.6   0.0       0.36   10.5   0.0    2.8  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0025   17.7   0.0        6.9    6.5   0.0    3.7  3  ATPase_2         ATPase domain predominantly from Archaea
     0.0047   16.2   0.0        2.2    7.4   0.0    2.3  2  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.005   17.2   0.8          6    7.2   0.0    3.5  2  AAA_19           AAA domain
     0.0074   15.8   0.0      0.067   12.7   0.0    2.1  2  UFD1             Ubiquitin fusion degradation protein UFD1
     0.0093   15.3   0.2        6.3    6.0   0.0    3.0  2  Zeta_toxin       Zeta toxin
  ------ inclusion threshold ------
      0.014   14.7   0.0       0.74    9.0   0.0    2.7  3  KAP_NTPase       KAP family P-loop domain
      0.015   15.2   1.6        2.3    8.1   0.0    4.0  3  NTPase_1         NTPase
      0.016   14.6   0.0        2.3    7.5   0.0    2.3  2  IPT              Isopentenyl transferase
      0.023   13.9   0.0        1.4    8.0   0.0    2.4  2  NB-ARC           NB-ARC domain
      0.025   14.7   0.0        3.7    7.7   0.0    2.6  2  Sigma54_activ_2  Sigma-54 interaction domain
      0.072   12.1   0.1         11    4.9   0.0    2.4  2  AAA_6            Hydrolytic ATP binding site of dynein motor 
      0.075   12.8   0.0         10    5.8   0.0    2.7  2  Cytidylate_kin   Cytidylate kinase
      0.089   11.8   0.0        3.5    6.6   0.0    2.4  2  T2SSE            Type II/IV secretion system protein
       0.13   11.1   0.0         13    4.5   0.0    2.2  2  AFG1_ATPase      AFG1-like ATPase
       0.16   11.6   0.0        7.1    6.2   0.0    3.0  2  Zot              Zonular occludens toxin (Zot)
       0.27   11.1   1.2        1.7    8.5   0.2    2.5  2  eIF-1a           Translation initiation factor 1A / IF-1


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.1   0.1   8.6e-49     3e-46       1     131 [.     259     388 ..     259     389 .. 0.97
   2 !  159.0   0.0   2.3e-49     8e-47       1     131 [.     533     665 ..     533     666 .. 0.96

  Alignments for each domain:
  == domain 1  score: 157.1 bits;  conditional E-value: 8.6e-49
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 +l++GppGtGKTl+a+ava+e+g+ f+ i+g+e++sk+ gese+++r+ f+ea++++ p i+fiDEid++a++r++++ e+e+rvv+qLlt +dg+k +
  KKY18888.1 259 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNS-PAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKAR 356
                 699*****************************************************9.****************************************7 PP

                 SSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA 100 eskvivigatnrpdkldpallr.gRfdrkieie 131
                  s+++v++atnrp+++dpal+r gRfdr++ i+
  KKY18888.1 357 -SNIVVMAATNRPNSIDPALRRfGRFDREVDIG 388
                 .66*************************99875 PP

  == domain 2  score: 159.0 bits;  conditional E-value: 2.3e-49
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 vl+yGppGtGKT+lakava+e+ ++f++++g+ells+++gese++ir++f++a++ a p+++f+DE+d++aksr    g++ + ++rvvnqLlte+dg+
  KKY18888.1 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAA-PCVVFLDELDSIAKSRggsVGDAGGASDRVVNQLLTEMDGM 630
                 79******************************************************9.****************987778999**************** PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 ++k++ v+vigatnrp++ld+al r gR+d  ++++
  KKY18888.1 631 TSKKN-VFVIGATNRPEQLDNALCRpGRLDTLVYVP 665
                 **755.*************************99987 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.3     2e-15   6.8e-13       1      40 [.     411     450 ..     411     471 .. 0.92
   2 !   38.0   0.1   3.1e-12   1.1e-09       1      39 [.     688     727 ..     688     733 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 2e-15
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitm 40 
                 dvdl+ +A++T+Gy+G D+a+lc eAa+  +r++++ i+ 
  KKY18888.1 411 DVDLESIAAETHGYVGSDIASLCSEAAMQQIREKMDLIDL 450
                 9*********************************998764 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 3.1e-12
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgike.it 39 
                 dvd+k +A+rT+G+SGADl  + ++A+ lA++++i + i+
  KKY18888.1 688 DVDIKYIASRTHGFSGADLGFVTQRAVKLAIKESIAAdIE 727
                 9********************************9876565 PP

>> CDC48_N  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.4   1.6e-21   5.6e-19       2      84 ..      44     124 ..      43     126 .. 0.95

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 1.6e-21
                 EEEECCS.S-CSSTTEEEE-HHHHHHHTS-TTSEEEEEC.CCC.EEEEEEEBSTTSTTTTEEEE-HHHHHHHT--TTEEEEEEEE- CS
     CDC48_N   2 LrVaeap.qedvgrgivridpedmeelglepgdvveieg.krk.TvaivwpaepedegkgiIrmdgvtRknagvsiGdkVtVrkae 84 
                 L+V++a  +   +++i++++ ++me l+l++gd+v ++g krk Tv iv+++++ d+  g+ r+++v+R+n++v+ Gd +tV+++ 
  KKY18888.1  44 LIVTDATnD---DNSIIALSNNTMETLQLFRGDTVLVKGkKRKdTVLIVLADDDLDD--GSARINRVVRHNLRVKHGDIITVHPCP 124
                 899999977...***************************9999*********99965..*************************96 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   3.1e-10   1.1e-07       6     109 ..     259     356 ..     254     367 .. 0.84
   2 !   17.9   0.0   7.3e-06    0.0025       6     105 ..     533     629 ..     528     635 .. 0.73

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 3.1e-10
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG----.---------HHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpk.essgadvSregVqrdLLq 101
                 il+ gp g+Gkt++a+a+a+   +     +  ++  e++     +   +++   +++  +ae++   i+++DEid i+pk e+++ +v r  V+  LL 
  KKY18888.1 259 ILMFGPPGTGKTLMARAVANETGA----FFFLINGPEIMS----KMAGESESNLRKAFEEAEKNSpaIIFIDEIDSIAPKrEKTNGEVER-RVVSQLLT 348
                 8999*****************995....9***********....77777777777777777777778*************5555566655.6888999* PP

                 HHH--EE- CS
       AAA_2 102 ileggtlt 109
                 +++g +++
  KKY18888.1 349 LMDGMKAR 356
                 ***97765 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 7.3e-06
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----...---------HHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpk...essgadvSregVqrdL 99 
                 +l+ gp g+Gkt+laka+a+   +    ++i +   ell     e+e+ +     ++    +a+   +v+lDE+d i+++   +   a   ++ V++ L
  KKY18888.1 533 VLFYGPPGTGKTMLAKAVANECAA----NFISVKGPELLSmwFGESESNIRDIFDKA----RAAAPCVVFLDELDSIAKSrggSVGDAGGASDRVVNQL 623
                 799*******************95....99999999999944344444444444333....334456************98533334444567899999 PP

                 HHHHH- CS
       AAA_2 100 Lqileg 105
                 L  ++g
  KKY18888.1 624 LTEMDG 629
                 987777 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   4.1e-08   1.4e-05      36     102 ..     259     333 ..     253     381 .. 0.77
   2 !   22.9   0.0   1.6e-07   5.6e-05      36      69 ..     533     566 ..     527     612 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 4.1e-08
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvl......ekagdlaalltnleek..dvlfideihrlsravee 102
                 +l++GpPG Gkt +a+ +a+e g+ +    gP +      e +++l   + + e++   ++fidei  ++++ e 
  KKY18888.1 259 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEImskmagESESNLRKAFEEAEKNspAIIFIDEIDSIAPKREK 333
                 89******************************8833222223445666665555542269******999887765 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 1.6e-07
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvl 69 
                 vl+yGpPG Gkt lak +a+e  +++ +  gP l
  KKY18888.1 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGPEL 566
                 9*******************************87 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   6.9e-08   2.4e-05       2      47 ..     259     332 ..     259     395 .. 0.67
   2 !   20.5   0.0   1.2e-06   0.00043       2     112 ..     533     672 ..     533     702 .. 0.59
   3 ?   -0.6   0.1         4   1.4e+03      29      73 ..     723     770 ..     708     786 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 6.9e-08
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqskt..........................d 47 
                 +l+ G+pG+GK+  a+ +++++g  ++l++ ++++++++g+ + +++                          +
  KKY18888.1 259 ILMFGPPGTGKTLMARAVANETGafFFLINGPEIMSKMAGESESNLRkafeeaeknspaiifideidsiapkrE 332
                 689*********************999************96555544444444444555555555555555541 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 1.2e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqskt...............................dytrvldrlyqilnelarkal 67 
                 vl+ G+pG+GK+ la+ ++++ +  ++ +  ++l+++ fg+ + +++                               d   ++dr+ ++l    + + 
  KKY18888.1 533 VLFYGPPGTGKTMLAKAVANECAanFISVKGPELLSMWFGESESNIRdifdkaraaapcvvfldeldsiaksrggsvgDAGGASDRVVNQLLTEMDGMT 631
                 799*****************9998888899999999999977776666663333334444444444444444444333323333333333333333333 PP

      AAA_33  68 sagrnvildatnlsrrerarflklarrlgvpvrivvvetdeetlk 112
                 s+++ +++ atn+ +    ++++++ r g  +++v+v  ++e  +
  KKY18888.1 632 SKKNVFVIGATNRPE----QLDNALCRPGRLDTLVYVPLPDEASR 672
                 333334444444333....33333333333556666665555555 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 4
      AAA_33  29 ssdtlrrrlfg...tdqqsktdytrvldrlyqilnelarkalsagrnv 73 
                 + d++r++ ++   +d+q  ++ t+++d + + +++ +++a+sa+r  
  KKY18888.1 723 AADIERTKEREaagEDVQMGEEDTDAEDPVPELTKRHFEEAMSAARRS 770
                 555555533333448888888888888999998999888888887765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00068      0.23      22      51 ..     254     280 ..     229     297 .. 0.79
   2 ?    2.5   0.0      0.51   1.7e+02     123     164 ..     304     355 ..     290     362 .. 0.60
   3 !   21.9   0.0   5.4e-07   0.00019      25     125 ..     531     626 ..     521     639 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00068
      AAA_16  22 grpelvllsGesGvGKsslvrellralekd 51 
                   p+ +l  G++G+GK+ ++r++++   ++
  KKY18888.1 254 KPPRGILMFGPPGTGKTLMARAVAN---ET 280
                 45699*****************996...33 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.51
      AAA_16 123 lkrllallsrderplvlvlDdlq...........wadeaslqllaaLlrlles 164
                 l+++++ +++  +p ++++D+++            ++    + l +L++ +++
  KKY18888.1 304 LRKAFEEAEK-NSPAIIFIDEIDsiapkrektngEVERRVVSQLLTLMDGMKA 355
                 4555566667.788*********555554444443333444444455555555 PP

  == domain 3  score: 21.9 bits;  conditional E-value: 5.4e-07
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesael.eawrekleeala.....avpelagaeas 117
                 + vl++G++G+GK+ l+++++++  ++   f++ k  +l     +s+ +   ++ + +r++ d+a++a++   + ++l++  a     +v+++ ga+ +
  KKY18888.1 531 RGVLFYGPPGTGKTMLAKAVANECAAN---FISVKGPEL-----LSM-WFGESE-SNIRDIFDKARAAAPcVVFLDELDSI-AksrggSVGDAGGASDR 618
                 89********************99999...999999999.....444.444423.67777777744433303333333333.24666555555555555 PP

      AAA_16 118 rllellkr 125
                  +++ll++
  KKY18888.1 619 VVNQLLTE 626
                 55555554 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   1.3e-07   4.6e-05       2     136 ..     259     377 ..     258     379 .. 0.76
   2 !   14.0   0.0   0.00011     0.037       2      31 ..     533     562 ..     532     654 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.3e-07
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.....G-SEEEEESGGG--HHHHHHHHHHHHSSEEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.....egeilvlDEveraesevlnsLlslleerrll 95 
                 +l+ GppGtgK+ +a+ +a  +++ ++ +++++ +++     + ++             +a++     +++i+++DE++ + ++  ++ +   e+r ++
  KKY18888.1 259 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNL------------RKAFEeaeknSPAIIFIDEIDSIAPKR-EKTNGEVERRVVS 344
                 799******************************9987554444444............33333333789**********999875.5566777777766 PP

                 ..-SSSEEE---......-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5  96 leeggelvkaknddllerfrviatanpldrslnelspalrs 136
                   ++ +l++  +  + +++ v+a++n+++    +++palr+
  KKY18888.1 345 --QLLTLMDGMK--ARSNIVVMAATNRPN----SIDPALRR 377
                 ..6666666655..334488999999888....99999986 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 0.00011
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvq 31 
                 vl  GppGtgK++la+ +a    +++  v 
  KKY18888.1 533 VLFYGPPGTGKTMLAKAVANECAANFISVK 562
                 899*************99987766665555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   0.00017     0.059       8      43 ..     259     285 ..     254     364 .. 0.72
   2 !   14.5   0.0   9.4e-05     0.032       9      29 ..     534     554 ..     529     585 .. 0.75
   3 ?   -0.3   0.0       3.6   1.2e+03      84     112 ..     583     623 ..     572     648 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00017
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevv 43 
                 ++ +G++GtGKT+ +r ++++          ++ ++
  KKY18888.1 259 ILMFGPPGTGKTLMARAVANET---------GAFFF 285
                 6789***************997.........44444 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 9.4e-05
      AAA_22   9 vvtGesGtGKTtllrrlleql 29 
                 + +G++GtGKT+l++ ++++ 
  KKY18888.1 534 LFYGPPGTGKTMLAKAVANEC 554
                 679**************9985 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 3.6
      AAA_22  84 qalraravielliiDEaqhlr.....s........eealeeL 112
                 + +ra+a + ++ +DE + +      s        ++++++L
  KKY18888.1 583 DKARAAA-PCVVFLDELDSIAksrggSvgdaggasDRVVNQL 623
                 3344444.59********997654331444445555666655 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   4.5e-06    0.0016      51     108 ..     257     309 ..     247     363 .. 0.78
   2 !   15.5   0.0   2.2e-05    0.0077      50      97 ..     530     575 ..     521     586 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.5e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevltqalrksig 108
                 r++L+ Gp+gtGkt +a a+++e g    f  ++g e+ s     +e    +lrk+  
  KKY18888.1 257 RGILMFGPPGTGKTLMARAVANETG--AFFFLINGPEIMSKMAGESES---NLRKAFE 309
                 89*********************99..78999*******998888774...5555554 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 2.2e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  50 GravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkkte 97 
                  r+vL+ Gp+gtGkt la a+++e +    f++++g e+ s+    +e
  KKY18888.1 530 SRGVLFYGPPGTGKTMLAKAVANECA--ANFISVKGPELLSMWFGESE 575
                 599*********************98..67999999999997666555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   0.00013     0.045      25      42 ..     259     276 ..     251     280 .. 0.90
   2 !   15.8   0.0     2e-05    0.0069      23      43 ..     531     551 ..     517     556 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00013
  Mg_chelatase  25 lllvGppGsGKtmlakrl 42 
                   +l++GppG+GKt++a+++
    KKY18888.1 259 ILMFGPPGTGKTLMARAV 276
                   89*************987 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2e-05
  Mg_chelatase  23 HnlllvGppGsGKtmlakrlp 43 
                     +l++GppG+GKtmlak+++
    KKY18888.1 531 RGVLFYGPPGTGKTMLAKAVA 551
                   5699*************9875 PP

>> CDC48_2  Cell division protein 48 (CDC48), domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.1   1.6e-09   5.5e-07       4      63 ..     146     208 ..     143     209 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 1.6e-09
                 CCCCH.HHHCCCTT..EEE-TTEEEEECCTCCCEEEEEEEECCCCSCEEECTSCCEEESTTCC CS
     CDC48_2   4 gdema.ylkrqFlg..rpvtkGdlvvfefkgqeiklvVvstePkgpvgitetTeielgtkpve 63 
                 g +++  l  +F    rpv +Gdl++++ ++++++++Vv+++P +  ++  +T i+ + +p +
  KKY18888.1 146 GSLFDvFLAPYFREayRPVRQGDLFTVRASMRQVEFKVVEVDPPEYGIVAQDTVIHAEGEPIQ 208
                 6667777888888888****************************************9999987 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00023      0.08      48      70 ..     257     279 ..     246     362 .. 0.82
   2 !   14.7   0.0   5.7e-05      0.02      49      78 ..     532     561 ..     527     567 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00023
   IstB_IS21  48 enivllGpsGvGKshlaialgve 70 
                  +i+++Gp+G+GK+ +a a++ e
  KKY18888.1 257 RGILMFGPPGTGKTLMARAVANE 279
                 5799***************9876 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 5.7e-05
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsv 78 
                 ++++ Gp+G+GK+ la a++ e +++ +sv
  KKY18888.1 532 GVLFYGPPGTGKTMLAKAVANECAANFISV 561
                 7899****************9988776665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0    0.0007      0.24       1      25 [.     259     297 ..     259     366 .. 0.68
   2 !   14.9   0.0   8.5e-05     0.029       1      34 [.     533     584 ..     533     605 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0007
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf.............g 25 
                 Il  G+pG+GKt +a+++++++ +f              
  KKY18888.1 259 ILMFGPPGTGKTLMARAVANETgAFfflingpeimskmA 297
                 7889***************99855566666544433330 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 8.5e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf.................gvnlrdvake 34 
                 +l  G+pG+GKt lak++++++ ++                   n+rd++ +
  KKY18888.1 533 VLFYGPPGTGKTMLAKAVANECaANfisvkgpellsmwfgesESNIRDIFDK 584
                 6789****************99544677776666666666666666666655 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1    0.0029         1      15      37 ..     252     274 ..     245     282 .. 0.86
   2 ?    6.1   0.0     0.018       6.2     121     163 ..     317     362 ..     286     379 .. 0.63
   3 !    9.0   0.0    0.0024      0.83      11      38 ..     522     549 ..     516     563 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0029
      ATPase  15 GipegrvvlitGepGtGKtifal 37 
                 Gi   r +l+ G pGtGKt++a 
  KKY18888.1 252 GIKPPRGILMFGPPGTGKTLMAR 274
                 78888999*************96 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.018
      ATPase 121 krvviDsitgl...ayeekeavaReilrqlvrvlkklgvTailvse 163
                   + iD i+++    ++++ +v R+ + ql++ + +++  + +v  
  KKY18888.1 317 AIIFIDEIDSIapkREKTNGEVERRVVSQLLTLMDGMKARSNIVVM 362
                 34555555555421666777889***********888776555444 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0024
      ATPase  11 ilkgGipegrvvlitGepGtGKtifalq 38 
                 +lk G+   r vl +G pGtGKt++a+ 
  KKY18888.1 522 FLKFGLSPSRGVLFYGPPGTGKTMLAKA 549
                 45779999999**************986 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0019      0.64       1      29 [.     259     287 ..     259     331 .. 0.83
   2 !   14.7   0.0   8.6e-05      0.03       1      42 [.     533     577 ..     533     604 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0019
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklk 29 
                   i+++Gp+g+GK+++a+ +a++    + l+
    KKY18888.1 259 ILMFGPPGTGKTLMARAVANETGAFFFLI 287
                   689**************999877665444 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 8.6e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl...klkkkdsvysrnpedd 42 
                   +++yGp+g+GK++lak +a++ + ++   k ++  s++++++e++
    KKY18888.1 533 VLFYGPPGTGKTMLAKAVANECAANFisvKGPELLSMWFGESESN 577
                   689*****************9997775554444445555555554 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   6.8e-05     0.023       5      77 ..     259     328 ..     256     368 .. 0.74
   2 !   10.3   0.0    0.0016      0.54       5      76 ..     533     601 ..     530     666 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.8e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe.kllelileklkeekktylflDEiqevp 77 
                 +++ G+  +GKT +++ +++e       ++ in  +   k++ ++e +l +++ e  +++   ++f+DEi  + 
  KKY18888.1 259 ILMFGPPGTGKTLMARAVANETG---AFFFLINGPEIMSKMAGESEsNLRKAFEEA-EKNSPAIIFIDEIDSIA 328
                 56789999***********9998...888999999988887777662444555554.555999*******9884 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0016
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76 
                 ++  G+  +GKT+l+k +++e      +++ ++  +     + ++e++++ i++k+++    ++flDE   +
  KKY18888.1 533 VLFYGPPGTGKTMLAKAVANECA---ANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCVVFLDELDSI 601
                 56789999**********98877...7777777666666556666666777777755558899*****9887 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.71   2.4e+02      68      98 ..      80     113 ..      65     188 .. 0.75
   2 ?    4.7   0.1     0.059        20      36      53 ..     259     276 ..     256     285 .. 0.85
   3 !    7.5   0.0    0.0082       2.8     130     177 ..     304     351 ..     288     362 .. 0.80
   4 !   11.3   0.1   0.00056      0.19      34      58 ..     531     555 ..     507     589 .. 0.76
   5 ?   -1.0   0.0       3.3   1.1e+03     129     172 ..     577     623 ..     558     640 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.71
      AAA_25  68 apeqgkVlyvsaEdsedelrrRlravgeal...r 98 
                 + ++ +Vl+v a+d+ d+   R+ +v +++   +
  KKY18888.1  80 KKRKDTVLIVLADDDLDDGSARINRVVRHNlrvK 113
                 457889*******************998873331 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.059
      AAA_25  36 allaGapgtGKttlaldl 53 
                 +l +G+pgtGKt +a  +
  KKY18888.1 259 ILMFGPPGTGKTLMARAV 276
                 5789*********98655 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0082
      AAA_25 130 vdaleaaieevegvrlvviDplsralggdensnsdv.galvealeriar 177
                 +++  +++e+ + ++ + iD ++++ +  e+ n +v +++v++l  + +
  KKY18888.1 304 LRKAFEEAEK-NSPAIIFIDEIDSIAPKREKTNGEVeRRVVSQLLTLMD 351
                 4455566677.66**********************99******988766 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 0.00056
      AAA_25  34 elallaGapgtGKttlaldlalava 58 
                   +l++G+pgtGKt+la  +a ++a
  KKY18888.1 531 RGVLFYGPPGTGKTMLAKAVANECA 555
                 45799************99998887 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 3.3
      AAA_25 129 dvdaleaaieevegvrlvviDplsralgg...densnsdv.galveal 172
                  ++++ +++++ + + +v +D l+++      +  ++  + +++v++l
  KKY18888.1 577 NIRDIFDKARA-AAPCVVFLDELDSIAKSrggSVGDAGGAsDRVVNQL 623
                 56777788888.558888888888865543446666655566666665 PP

>> Vps4_C  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       2.7   9.4e+02      12      44 ..     443     480 ..     433     482 .. 0.66
   2 !   23.9   0.0     9e-08   3.1e-05      26      59 ..     752     785 ..     734     786 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 2.7
      Vps4_C  12 iemtwmdip.....sdkllePpvtlkDflkalkkarpt 44 
                 ++m + d++     ++ l    vt++ f  al  + p+
  KKY18888.1 443 EKMDLIDLDedtidAEVLDSLGVTMENFRFALGVSNPS 480
                 56777776666662444445599999999999887776 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 9e-08
      Vps4_C  26 ePpvtlkDflkalkkarptVskeDLekheeFTke 59 
                  P++t ++f++a++ ar++Vs+ +++++e F ++
  KKY18888.1 752 VPELTKRHFEEAMSAARRSVSDVEIRRYEAFAQQ 785
                 69*****************************997 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0033       1.1      34      57 ..     257     280 ..     246     339 .. 0.82
   2 !   13.8   0.0     9e-05     0.031      26      62 ..     523     558 ..     518     605 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0033
       AAA_7  34 kpvllvGptGtGKtviikdllkkl 57 
                 + +l+ Gp GtGKt++++ + ++ 
  KKY18888.1 257 RGILMFGPPGTGKTLMARAVANET 280
                 679*************99988765 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 9e-05
       AAA_7  26 lelllknkkpvllvGptGtGKtviikdllkkldkeky 62 
                 l+  l+ ++ vl++Gp GtGKt+++k + +++   ++
  KKY18888.1 523 LKFGLSPSRGVLFYGPPGTGKTMLAKAVANECA-ANF 558
                 5556677889*****************999887.444 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0024      0.82       2      38 ..     259     300 ..     258     341 .. 0.72
   2 !   12.0   0.0   0.00053      0.18       2      31 ..     533     567 ..     532     596 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0024
      AAA_28   2 ivitGgestGKTtlleaLaar.gyp..vv..pEaareileek 38 
                 i ++G+++tGKT +++a a++ g     +  pE++ ++  e 
  KKY18888.1 259 ILMFGPPGTGKTLMARAVANEtGAFffLIngPEIMSKMAGES 300
                 6789***************76543311335666666655444 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00053
      AAA_28   2 ivitGgestGKTtlleaLaar...gypvv..pEaa 31 
                 + + G+++tGKT l++a a++   ++  v  pE  
  KKY18888.1 533 VLFYGPPGTGKTMLAKAVANEcaaNFISVkgPELL 567
                 6799***************6555543333366655 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.039        13      52      81 ..     255     284 ..     230     374 .. 0.65
   2 !   15.3   0.0   2.5e-05    0.0086      18      81 ..     486     558 ..     467     599 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.039
      DUF815  52 pannvLLwGarGtGKSslvkallneyaeeg 81 
                 p + +L++G  GtGK  + +a+ ne+ +  
  KKY18888.1 255 PPRGILMFGPPGTGKTLMARAVANETGAFF 284
                 55679*****************99986544 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.5e-05
      DUF815  18 pveevdevklddLvgidkqkealvent.......eqfle.g.lpannvLLwGarGtGKSslvkallneyaeeg 81 
                 +v ev +v++dd+ g+++ k++l+e +       e+fl+ g  p++ vL++G  GtGK  l ka+ ne+a++ 
  KKY18888.1 486 AVVEVPNVRWDDIGGLESVKRELIESVqypvdhpEKFLKfGlSPSRGVLFYGPPGTGKTMLAKAVANECAANF 558
                 566778999**************99872232333578874336899**********************99875 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0021      0.71       5      75 ..     259     325 ..     256     335 .. 0.61
   2 !   10.7   0.0   0.00089      0.31       5      22 ..     533     550 ..     530     605 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0021
      AAA_24   5 iliyGpsgiGKTtlakel..gpkplfidtekGlksldadkfpdieswedfldevvelaaeladyktlviDtid 75 
                 il++Gp+g+GKT +a+    +  ++f+ + +G   +    ++   s  +++++++e +++ +   +++iD id
  KKY18888.1 259 ILMFGPPGTGKTLMARAVanETGAFFF-LINGPEIMSKMAGE---SESNLRKAFEEAEKNSP--AIIFIDEID 325
                 899************999753333333.33333333333333...55566666666555555..566666666 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00089
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +l yGp+g+GKT+lak  
  KKY18888.1 533 VLFYGPPGTGKTMLAKAV 550
                 688************987 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0     0.016       5.5       7     101 ..     252     454 ..     249     464 .. 0.58
   2 !   11.7   0.0    0.0008      0.28       4      36 ..     523     555 ..     521     637 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.016
                 EEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEE.EE...........................EETTCEGGG..B-HHHCCHCEEEE-SS--S- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxx.xx...........................xxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   7 klkegekvaivGenGaGKStLlkllagllkp....teG.ei...........................lldgkdlke..qeleslrkeigvlpqepqlf 71 
                  +k+ + + ++G+ G+GK+ +++++a+++       +G ei                            +d+ d+    +e++  + e +v++q  +l 
  KKY18888.1 252 GIKPPRGILMFGPPGTGKTLMARAVANETGAffflINGpEImskmagesesnlrkafeeaeknspaiiFIDEIDSIApkREKTNGEVERRVVSQLLTLM 350
                 56667778899********99999999886655552221335555666666666666666666665553333322222223444444456777777777 PP

                 TTSBHHHH..........................................................................HHHTCHHHHHHHSTTGG CS
                 xxxxxxxx..........................................................................xxxxxxxxxxxxxxxxx RF
    ABC_tran  72 peltvren..........................................................................esdeeiekalsklglke 96 
                 +++++r+n                                                                           s++ ++++++k++l++
  KKY18888.1 351 DGMKARSNivvmaatnrpnsidpalrrfgrfdrevdigipdptgrleilqihtknmklgedvdlesiaaethgyvgsdiaslCSEAAMQQIREKMDLID 449
                 777777777777777666666666666666666666666666666666666666666655555555555555555555555444445666666666666 PP

                 TTCBG CS
                 xxxxx RF
    ABC_tran  97 lkdtv 101
                 l++++
  KKY18888.1 450 LDEDT 454
                 55555 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.0008
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllk 36 
                 +++ l++++ v + G+ G+GK+ L+k++a++  
  KKY18888.1 523 LKFGLSPSRGVLFYGPPGTGKTMLAKAVANECA 555
                 67999**********************998864 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0064       2.2     117     140 ..     259     282 ..     253     288 .. 0.86
   2 !   12.6   0.0   0.00015     0.052     117     137 ..     533     553 ..     526     561 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0064
   Parvo_NS1 117 vwfyGpantGktnlaeaIakavpl 140
                 ++++Gp+ tGkt +a+a a+ +  
  KKY18888.1 259 ILMFGPPGTGKTLMARAVANETGA 282
                 7899**************997665 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00015
   Parvo_NS1 117 vwfyGpantGktnlaeaIaka 137
                 v+fyGp+ tGkt+la+a a+ 
  KKY18888.1 533 VLFYGPPGTGKTMLAKAVANE 553
                 89***************9985 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0022      0.75      24      63 ..     258     294 ..     245     372 .. 0.69
   2 !    8.8   0.0    0.0036       1.3      24      47 ..     532     555 ..     519     603 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0022
                      -EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-T CS
  Sigma54_activat  24 svlitGesGtGKellaraiheaskrkekpfvavncaaipe 63 
                       +l+ G  GtGK+l+ara+ +++    + f  +n  +i +
       KKY18888.1 258 GILMFGPPGTGKTLMARAVANET---GAFFFLINGPEIMS 294
                      699**************997654...35666666655544 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0036
                      -EEEECSTTSSHHHHHHHHHHHST CS
  Sigma54_activat  24 svlitGesGtGKellaraiheask 47 
                       vl  G  GtGK++la+a+ ++  
       KKY18888.1 532 GVLFYGPPGTGKTMLAKAVANECA 555
                      699***************987655 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1     0.002      0.69      22      40 ..     259     277 ..     246     282 .. 0.87
   2 !    9.3   0.0     0.002      0.69      22      43 ..     533     554 ..     524     561 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.002
                 EEEE--TTSSTTHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavala 40 
                 + ++Gp GtGKt++a a+a
  KKY18888.1 259 ILMFGPPGTGKTLMARAVA 277
                 5789***********9998 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.002
                 EEEE--TTSSTTHHHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalavea 43 
                 v   Gp GtGKt+la a+a e 
  KKY18888.1 533 VLFYGPPGTGKTMLAKAVANEC 554
                 6678************999765 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0021      0.71      37     190 ..     259     412 ..     254     444 .. 0.69
   2 !    8.1   0.0    0.0061       2.1      37      64 ..     533     560 ..     528     571 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0021
                 EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHTT-HHHHHHHHTT-.SEEEEE-GGGGTT-.HHHHHH........HHHHHHH CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrdkkaeefkeklrkv.DvLliDDiqflagk.ektqee........lfhtfna 125
                 ++++g+ G Gkt + +a++ne+      +    +++ e +++++   +++  ++f e  ++   ++ iD+i  +a k ekt+ e        l+++++ 
  KKY18888.1 259 ILMFGPPGTGKTLMARAVANETG-----AFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSpAIIFIDEIDSIAPKrEKTNGEverrvvsqLLTLMDG 352
                 689*********99999988765.....5568899*********************99886516788*******9773555544222211114444455 PP

                 HHTTT-EEEEEESS-TTT-SS--HHHHHHHHSSEEEE-----HHHHHHHHHHHHHHTT----TTH CS
    Bac_DnaA 126 lleegkqvvlssDrsPkeleeledrlrsrfeaGlvvdieppdletrlailkkkieaeklevpeev 190
                 +   ++ vv+++   P++++    r+  rf++ + + i  pd   rl+il+ + +  ++++ e+v
  KKY18888.1 353 MKARSNIVVMAATNRPNSIDPALRRF-GRFDREVDIGI--PDPTGRLEILQIHTK--NMKLGEDV 412
                 555666799999999*9988766554.68888665555..666777888764443..33333333 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0061
                 EEEE-SSSSSHHHHHHHHHHHHHHHSSS CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlenape 64 
                 +++yg+ G Gkt L ka++ne  +n+ +
  KKY18888.1 533 VLFYGPPGTGKTMLAKAVANECAANFIS 560
                 799*****************99988755 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0026       0.9       1      57 [.     262     319 ..     262     348 .. 0.68
   2 ?    7.8   0.0     0.012       4.1       1      25 [.     536     560 ..     536     612 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0026
                 EE-TTSSHHHHHHHHHHHHT..EEEEEHHHHHHHHHHTTTSHSSHHHHCTSHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekyg..fthlsaGdllreeakrgglakardemrklpleekkel 57 
                 +G+PG GK+ +++ ++ + g  f  ++  +++ ++a ++++ + r+++++++++    +
  KKY18888.1 262 FGPPGTGKTLMARAVANETGafFFLINGPEIMSKMAGESES-NLRKAFEEAEKNSPAII 319
                 6***************9997535556666666677666654.56677766665555544 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.012
                 EE-TTSSHHHHHHHHHHHHTEEEEE CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthls 25 
                 +G+PG GK+ +++ ++ +    ++s
  KKY18888.1 536 YGPPGTGKTMLAKAVANECAANFIS 560
                 7************999998666655 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00035      0.12      22      85 ..     254     317 ..     228     362 .. 0.72
   2 ?    5.3   0.0     0.052        18      25      51 ..     531     557 ..     501     578 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00035
                 .TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG..........G CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke......i 85 
                 k  + +l+  + GtGKTl+a +++ +         f+fl+++ ++++++  e ++ l +a++e      +
  KKY18888.1 254 KPPRGILMFGPPGTGKTLMARAVANETG------AFFFLINGPEIMSKMAGESESNLRKAFEEaeknspA 317
                 555667777899******9887777665......59**************88877777777653333332 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.052
                 SEEEEEESTTSTHHHHHHHHHHHH-S. CS
      ResIII  25 krglikmaTGtGKTlvaaklierllkk 51 
                 + +l+  + GtGKT++a +++ +++ +
  KKY18888.1 531 RGVLFYGPPGTGKTMLAKAVANECAAN 557
                 56789999*********9998888765 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.017       5.7      21      44 ..     258     281 ..     229     291 .. 0.78
   2 !   10.4   0.0    0.0014      0.48      20      51 ..     531     564 ..     504     567 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.017
                 EEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE  21 vilLeGdLGaGKTtlvrglakalg 44 
                  il+ G+ G+GKT ++r++a++ g
  KKY18888.1 258 GILMFGPPGTGKTLMARAVANETG 281
                 4999***************99877 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0014
                 EEEEEEESTTSSHHHHHHHHHHHTT--..----T CS
        TsaE  20 dvilLeGdLGaGKTtlvrglakalgve..evkSP 51 
                 + +l++G+ G+GKT+l++++a+++  +  +vk P
  KKY18888.1 531 RGVLFYGPPGTGKTMLAKAVANECAANfiSVKGP 564
                 3599******************998876677766 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0046       1.6       2      48 ..     259     303 ..     258     371 .. 0.63
   2 !    8.5   0.0    0.0049       1.7       2      30 ..     533     561 ..     532     569 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0046
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfe 48 
                 +l+ g PG++ktl+++a+a+  ++ f  i   p+++ s + G +  +
  KKY18888.1 259 ILMFGPPGTGKTLMARAVANETGAFFFLIN-GPEIM-SKMAGESESN 303
                 68999***************9998877664.56666.4556655444 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0049
       AAA_3   2 vllegvPGlaktllvkalakaldlefkri 30 
                 vl+ g PG++kt+l+ka+a+   ++f  +
  KKY18888.1 533 VLFYGPPGTGKTMLAKAVANECAANFISV 561
                 788999**************999998766 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0      0.01       3.5      21      41 ..     260     280 ..     247     320 .. 0.79
   2 !    9.6   0.0     0.002      0.69      14      42 ..     527     555 ..     516     788 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.01
      AAA_11  21 liqGPPGtgKTktivellsql 41 
                 l+ GPPGtgKT +  ++ ++ 
  KKY18888.1 260 LMFGPPGTGKTLMARAVANET 280
                 889********8888777765 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.002
      AAA_11  14 lseseitliqGPPGtgKTktivellsqll 42 
                 ls s  +l+ GPPGtgKT    ++ ++ +
  KKY18888.1 527 LSPSRGVLFYGPPGTGKTMLAKAVANECA 555
                 555666899*********87777776664 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0       0.1        35       3      23 ..     259     279 ..     257     282 .. 0.86
   2 ?   -2.0   0.0       8.6   2.9e+03      80     125 ..     314     362 ..     294     378 .. 0.60
   3 !   11.7   0.0   0.00052      0.18       3      26 ..     533     556 ..     531     574 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.1
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 +++ G++G GKT +++ +a +
  KKY18888.1 259 ILMFGPPGTGKTLMARAVANE 279
                 6788***********999875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 8.6
                 CCCEEEEEE-STT-SS-TCH............HHHHHCTTTTT--EEEE CS
       NACHT  80 perlLlilDglDelvtdlgq...kekqpvrtlLselirkkllpeaslll 125
                    + + +D +D ++ + ++   + +++v   L +l+ +   +++ +++
  KKY18888.1 314 NSPAIIFIDEIDSIAPKREKtngEVERRVVSQLLTLMDGMKARSNIVVM 362
                 4445566788888888776676744444444444676664444444444 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00052
                 EEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   3 vilqGeaGsGKTtLlqklalawae 26 
                 v+  G++G GKT+L++ +a + a+
  KKY18888.1 533 VLFYGPPGTGKTMLAKAVANECAA 556
                 7889**************998876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1     0.015       5.1      22      40 ..     260     278 ..     247     282 .. 0.86
   2 !    8.9   0.0    0.0033       1.1      20      43 ..     532     555 ..     523     563 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.015
      AAA_30  22 vltGpAGtGKttalkalre 40 
                 ++ Gp+GtGKt + +a+++
  KKY18888.1 260 LMFGPPGTGKTLMARAVAN 278
                 567**********999865 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0033
      AAA_30  20 vavltGpAGtGKttalkalreawe 43 
                  ++  Gp+GtGKt++ ka+++  +
  KKY18888.1 532 GVLFYGPPGTGKTMLAKAVANECA 555
                 56788************9987655 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       6.3   2.2e+03     121     208 ..       8      94 ..       4     102 .. 0.49
   2 ?    3.8   0.0      0.12        42       2      71 ..     260     324 ..     259     329 .. 0.64
   3 !   10.5   0.0     0.001      0.36       5      70 ..     537     597 ..     533     601 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 6.3
  Viral_helicase1 121 rvgrrttyllpsdvaeilsakvgteveversgel.kvetepkgq.e..kvlvyltftqalkealgvrevttvhevqGltfdkVtlvllketd 208
                      +  + +++l+ + +ae++++   t+  + ++++  ++ +    + +   +++++  t+++++  + + + +v+   G+  ++++l++l + d
       KKY18888.1   8 VQHKAKVNLNDASGAEKKEEL-DTSTAILKKKKKpNSLIVTDATnDdnSIIALSNNTMETLQLFRGD-TVLVK---GKKRKDTVLIVLADDD 94 
                      555556666666666666666.333333333333322222222211346777777888777777776.44443...4444444444443444 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.12
  Viral_helicase1   2 vvhGvpGcGKStlirkllrts..liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDEy 71 
                      ++ G pG GK+ + r ++++     + +n p  e+ ++ + +++++     ++f++a ++s    i+++DE+
       KKY18888.1 260 LMFGPPGTGKTLMARAVANETgaFFFLINGP--EIMSKMAGESESNLR---KAFEEAEKNS--PAIIFIDEI 324
                      66799***************77533333333..555555444444444...4455554444..569999997 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.001
  Viral_helicase1   5 GvpGcGKStlirkllrts.liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDE 70 
                      G pG GK+ l + +++++  ++ +++   ell++++ +++++    +d++  a+ +     +++lDE
       KKY18888.1 537 GPPGTGKTMLAKAVANECaANFISVKG-PELLSMWFGESESNIRDIFDKARAAAPC-----VVFLDE 597
                      78****************977777777.8*******99999999999999888765.....789998 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.034        12      23      79 ..     259     309 ..     247     363 .. 0.61
   2 ?    6.5   0.0      0.02       6.9      23      43 ..     533     553 ..     525     562 .. 0.84
   3 ?   -1.6   0.0       6.1   2.1e+03     119     161 ..     587     639 ..     570     643 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.034
    ATPase_2  23 yfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkkle 79 
                 ++ +Gp g GKt + + ++++        +++i+  e+ ++ + e+  e++ +k +e
  KKY18888.1 259 ILMFGPPGTGKTLMARAVANETG----AFFFLINGPEIMSKMAGES--ESNLRKAFE 309
                 7889*******988888888773....4677777777777777666..222222222 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.02
    ATPase_2  23 yfiYGpegsGKtaLlkeiien 43 
                 ++ YGp g GKt L k ++++
  KKY18888.1 533 VLFYGPPGTGKTMLAKAVANE 553
                 678*************99987 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 6.1
    ATPase_2 119 k...iiiiiDelqklidlgln.........gaellvkeLlnliesltkekhlcvv 161
                      ++++Del  +   +++          +  +v++Ll+ ++  t++k+++v+
  KKY18888.1 587 AaapCVVFLDELDSIA--KSRggsvgdaggASDRVVNQLLTEMDGMTSKKNVFVI 639
                 2334799999999999..7777778888766677888888888887777777665 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.012       4.2       5      45 ..     260     293 ..     257     343 .. 0.65
   2 !    7.4   0.0    0.0064       2.2       5      33 ..     534     555 ..     530     582 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.012
     DUF2075   5 lVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvl 45 
                 l  G +GtGKt+++ ++++e         a +++ N+p+++
  KKY18888.1 260 LMFGPPGTGKTLMARAVANET-------GAFFFLINGPEIM 293
                 55699*********9999998.......4455555555443 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0064
     DUF2075   5 lVtGvaGtGKtvvllnllaeleddeeert 33 
                 l  G +GtGKt+++ ++++e+        
  KKY18888.1 534 LFYGPPGTGKTMLAKAVANEC-------A 555
                 6689***************99.......3 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2      0.05        17      13      30 ..     259     276 ..     251     283 .. 0.81
   2 ?    7.2   0.0     0.017         6      10      34 ..     530     554 ..     525     570 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.05
      AAA_19  13 llvtaGpGtGKTrvlkhi 30 
                 +l+ ++pGtGKT + +++
  KKY18888.1 259 ILMFGPPGTGKTLMARAV 276
                 7899********987765 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.017
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivall 34 
                 ++ +l  ++pGtGKT + k++ +++
  KKY18888.1 530 SRGVLFYGPPGTGKTMLAKAVANEC 554
                 6678899********9988877665 PP

>> UFD1  Ubiquitin fusion degradation protein UFD1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.86     3e+02      66      96 ..      52      82 ..      33      96 .. 0.75
   2 !   12.7   0.0   0.00019     0.067      67     166 ..      96     200 ..      78     206 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.86
        UFD1 66 aeegtvylPewmmenlgleegdlveiesvsl 96
                 ++  + l++  me+l+l  gd+v ++  + 
  KKY18888.1 52 DDNSIIALSNNTMETLQLFRGDTVLVKGKKR 82
                3556788999**************9997665 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00019
        UFD1  67 eegtvylPewmmenlgleegdlveie.svslpkgkfvklqpqsedfldi..sdpkavLekaLr.nfatLtkgdvieikyndkvyelkvlevkpes.avs 160
                 ++g+  + + + +nl++++gd+++++   +++ +k + + p   ++  +  s    +L   +r  +  + +gd ++++ + +++e+kv+ev+p + ++ 
  KKY18888.1  96 DDGSARINRVVRHNLRVKHGDIITVHpCPDIKYAKRIAVLPIADTIEGLtgSLFDVFLAPYFReAYRPVRQGDLFTVRASMRQVEFKVVEVDPPEyGIV 194
                 6788889999999************94458999******99988887661155689999****89***************************8665988 PP

        UFD1 161 iietdl 166
                   +t +
  KKY18888.1 195 AQDTVI 200
                 887755 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.018       6.3      15      40 ..     255     280 ..     247     287 .. 0.89
   2 ?    5.7   0.0     0.023         8      21      50 ..     535     562 ..     530     569 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.018
  Zeta_toxin  15 rPklillgGqpGAGKselaellkdel 40 
                  P  il+ G pG GK+ +a+++++e+
  KKY18888.1 255 PPRGILMFGPPGTGKTLMARAVANET 280
                 58889*****************9986 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.023
  Zeta_toxin  21 lgGqpGAGKselaellkdelerqgnvvrld 50 
                   G pG GK+ la+++++e   + n++ ++
  KKY18888.1 535 FYGPPGTGKTMLAKAVANEC--AANFISVK 562
                 5699***************9..88888876 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0021      0.74     160     192 ..     300     334 ..     259     347 .. 0.75
   2 ?   -2.4   0.0       6.3   2.2e+03      23      44 ..     533     554 ..     527     566 .. 0.82
   3 ?    2.1   0.0      0.27        93     160     189 ..     577     605 ..     567     612 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0021
  KAP_NTPase 160 lladmektLda..lqkrlVvviDdLDrceteevlq 192
                   +++ k++++  ++++ +++iD++D++ +++ ++
  KKY18888.1 300 SESNLRKAFEEaeKNSPAIIFIDEIDSIAPKREKT 334
                 334444555556679*************9998665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.3
  KAP_NTPase  23 vgLygkWGsGKssllnkledel 44 
                 v  yg+ G+GK+ l + + +e 
  KKY18888.1 533 VLFYGPPGTGKTMLAKAVANEC 554
                 5678999******999888775 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.27
  KAP_NTPase 160 lladmektLdalqkrlVvviDdLDrcetee 189
                 ++ d++++ +a   + Vv++D+LD++ +++
  KKY18888.1 577 NIRDIFDKARA-AAPCVVFLDELDSIAKSR 605
                 44455555544.8899*********98776 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.56   1.9e+02       3      21 ..     260     278 ..     258     282 .. 0.83
   2 ?    0.7   0.1       1.3   4.4e+02      85     118 ..     304     338 ..     294     362 .. 0.69
   3 ?    8.1   0.0    0.0067       2.3       5      32 ..     536     563 ..     532     566 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.56
                 EEE--TTSSHHHHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkkvle 21 
                 ++ GppG+GKt + + v++
  KKY18888.1 260 LMFGPPGTGKTLMARAVAN 278
                 567********99998887 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 1.3
                 HHHHHHHHH.HHH-EEEE---STTGGG-HHHHHHH CS
    NTPase_1  85 alealrkal.seadviviDEiGkmElkskkfkeav 118
                   +a+++a  +++ +i iDEi ++  k +k + +v
  KKY18888.1 304 LRKAFEEAEkNSPAIIFIDEIDSIAPKREKTNGEV 338
                 34445555434455*******77766666655555 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0067
                 E--TTSSHHHHHHHHHHHH...GGGEEE CS
    NTPase_1   5 TGppGvGKtTlvkkvlellkssgvkvgG 32 
                  GppG+GKt l k v+++++ + ++v+G
  KKY18888.1 536 YGPPGTGKTMLAKAVANECAANFISVKG 563
                 59*****************999899988 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0068       2.3       5      27 ..     260     282 ..     257     289 .. 0.92
   2 ?    4.5   0.0     0.057        20       5      31 ..     534     560 ..     531     562 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0068
         IPT   5 lifGatttGKtaeaiklaketga 27 
                 l+fG+ +tGKt +a ++a+etga
  KKY18888.1 260 LMFGPPGTGKTLMARAVANETGA 282
                 89*******************97 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.057
         IPT   5 lifGatttGKtaeaiklaketgapviv 31 
                 l +G+ +tGKt  a ++a+e +a  i+
  KKY18888.1 534 LFYGPPGTGKTMLAKAVANECAANFIS 560
                 78*****************99988876 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.14        47      24      43 ..     260     279 ..     253     283 .. 0.87
   2 ?    8.0   0.0    0.0042       1.4      23      43 ..     533     553 ..     514     561 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.14
                 EEEESTTSSHHHHHHHHCCS CS
      NB-ARC  24 alvGmgGvGKttlakqilnk 43 
                  + G +G GKt +a+ + n+
  KKY18888.1 260 LMFGPPGTGKTLMARAVANE 279
                 578************99987 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0042
                 EEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  23 valvGmgGvGKttlakqilnk 43 
                 v ++G +G GKt lak + n+
  KKY18888.1 533 VLFYGPPGTGKTMLAKAVANE 553
                 679***************998 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0     0.011       3.7      24      84 ..     259     330 ..     254     335 .. 0.64
   2 ?    4.0   0.0      0.15        51      24      45 ..     533     554 ..     528     605 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.011
                      EEEEEETT--HHHHHHCC--TTS-EE--SS....TTHHHH-H..........HHHHHHTTTSEEEEEE-TT--HH CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhknsgpwleifv....verlaklp..........ldlleqakggtLylkdiadlska 84 
                      +++ G++G+gk+l+Ar+ +++ g    + +    + +                +  e+ +++++++ +i+++ ++
       KKY18888.1 259 ILMFGPPGTGKTLMARAVANETGAFFFLINgpeiMSKM---AgesesnlrkaFEEAEKNSPAIIFIDEIDSIAPK 330
                      6899****************999865433310003333...1333344433334444458899999999887665 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.15
                      EEEEEETT--HHHHHHCC--TT CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhkns 45 
                      v+  G++G+gk++ A++ +++ 
       KKY18888.1 533 VLFYGPPGTGKTMLAKAVANEC 554
                      8999************998765 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.031        11      36      69 ..     260     293 ..     250     300 .. 0.87
   2 ?    4.4   0.0     0.045        15      33      63 ..     531     561 ..     523     569 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.031
       AAA_6  36 apaGpagtGKtEtvkdLakalakqvvvfncsdql 69 
                  + Gp gtGKt   + +a++ + +++++n  + +
  KKY18888.1 260 LMFGPPGTGKTLMARAVANETGAFFFLINGPEIM 293
                 578**********************999977665 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.045
       AAA_6  33 lggapaGpagtGKtEtvkdLakalakqvvvf 63 
                  g   +Gp gtGKt   k +a++ a  ++ +
  KKY18888.1 531 RGVLFYGPPGTGKTMLAKAVANECAANFISV 561
                 566779*********9999999998877765 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0      0.11        36       5      26 ..     263     284 ..     259     289 .. 0.87
   2 ?    5.8   0.0     0.029        10       5      28 ..     537     560 ..     533     562 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.11
                     -STTSSHHHHHHHHHHHHT-EE CS
  Cytidylate_kin   5 GPagsGKssvaralaeklglky 26 
                     GP g+GK  +ara+a++ g+ +
      KKY18888.1 263 GPPGTGKTLMARAVANETGAFF 284
                     9***************998765 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.029
                     -STTSSHHHHHHHHHHHHT-EEEE CS
  Cytidylate_kin   5 GPagsGKssvaralaeklglkyld 28 
                     GP g+GK  +a+a+a++  +++++
      KKY18888.1 537 GPPGTGKTMLAKAVANECAANFIS 560
                     9****************9999986 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.19        65     130     152 ..     257     279 ..     215     284 .. 0.85
   2 ?    6.6   0.0      0.01       3.5     104     155 ..     494     556 ..     428     563 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.19
       T2SSE 130 glilvsGgTgsGKttllyallke 152
                   il+ G+ g+GKt ++ a+ +e
  KKY18888.1 257 RGILMFGPPGTGKTLMARAVANE 279
                 458999*********99988765 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.01
       T2SSE 104 tlddlgaeealk...........ekiaevlrkavrerglilvsGgTgsGKttllyallkeink 155
                 + dd+g  e++k           ++ +++l+  ++    +l+ G+ g+GKt l+ a+ +e ++
  KKY18888.1 494 RWDDIGGLESVKreliesvqypvDHPEKFLKFGLSPSRGVLFYGPPGTGKTMLAKAVANECAA 556
                 5555555555556666666666677788888888889999**************999888765 PP

>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.056        19      59      78 ..     253     272 ..     231     278 .. 0.85
   2 ?    4.5   0.0     0.038        13      60      79 ..     528     547 ..     516     554 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.056
  AFG1_ATPase  59 vepvrglYlwGgvGrGKtyl 78 
                   +p+rg+ + G+ G GKt +
   KKY18888.1 253 IKPPRGILMFGPPGTGKTLM 272
                  579**************964 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.038
  AFG1_ATPase  60 epvrglYlwGgvGrGKtylm 79 
                   p rg+ ++G+ G GKt+l 
   KKY18888.1 528 SPSRGVLFYGPPGTGKTMLA 547
                  699***************96 PP

>> Zot  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.021       7.1       7      92 ..     263     327 ..     259     378 .. 0.65
   2 ?    1.6   0.0      0.55   1.9e+02       4      17 ..     534     547 ..     533     601 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.021
         Zot   7 GapGsgKtsg..avkkdllp..alkegRkiitnidGlrlerieqvlgekvs.tarliridnpegaetlkefakwatidkgallviDEcqei 92 
                 G+pG+gKt+   av ++     +l +g +i+ ++ G    ++++ ++e+ + ++ +i+id                          E   i
  KKY18888.1 263 GPPGTGKTLMarAVANETGAffFLINGPEIMSKMAGESESNLRKAFEEAEKnSPAIIFID--------------------------EIDSI 327
                 777777776411444444445555577777777777777777777777666667777776..........................33333 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.55
         Zot   4 lvtGapGsgKtsga 17 
                 l++G+pG+gKt+ a
  KKY18888.1 534 LFYGPPGTGKTMLA 547
                 899********865 PP

>> eIF-1a  Translation initiation factor 1A / IF-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1       1.5   5.3e+02      42      56 ..      81      95 ..      50     103 .. 0.63
   2 ?    8.5   0.2     0.005       1.7      29      53 ..     100     124 ..      95     133 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.5
                -TT-EEEEEE-TT-T CS
      eIF-1a 42 krGdyVlVelspydl 56
                kr d Vl+ l + dl
  KKY18888.1 81 KRKDTVLIVLADDDL 95
                345555555555555 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.005
                 EEE-HHHHCT----TT-EEEEEE-T CS
      eIF-1a  29 aeipgkfRnkiwikrGdyVlVelsp 53 
                 a+i++  R++ ++k Gd+++V + p
  KKY18888.1 100 ARINRVVRHNLRVKHGDIITVHPCP 124
                 799999***************9966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (824 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      603  (0.0336327); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        52  (0.00290033); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              52  [number of targets reported over threshold]
# CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.53
# Mc/sec: 4648.92
//
Query:       KKY18889.1  [L=228]
Description: putative septum-promoting gtp-binding protein 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-27   95.8   0.1    2.7e-27   95.4   0.1    1.1  1  Ras        Ras family
    1.4e-23   83.4   0.1      2e-23   82.9   0.1    1.2  1  Roc        Ras of Complex, Roc, domain of DAPkinase
    9.3e-07   28.5   0.1    1.3e-06   28.0   0.1    1.1  1  Arf        ADP-ribosylation factor family
    0.00012   21.5   0.1    0.00019   20.9   0.1    1.3  1  Gtr1_RagA  Gtr1/RagA G protein conserved region
  ------ inclusion threshold ------
      0.043   13.0   0.3       0.29   10.2   0.1    2.0  2  G-alpha    G-protein alpha subunit


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.1   7.4e-31   2.7e-27       1     117 [.      88     203 ..      88     225 .. 0.90

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 7.4e-31
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 K+ +vGd ++GKtsl++++v+++++e+y++T+gv+f++k+i+++++e++++iwD  Gq ef ++ +l+ +da +il ++d+t++++++++k+w+++ + 
  KKY18889.1  88 KVGMVGDAQIGKTSLMVKYVEGSWDEDYIQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVNMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQGRG 186
                 6779********************************************************************************************999 PP

                 HSTTTSEEEEEEETTTGG CS
         Ras 100 vaeenvpivLvGnKvDle 117
                   ++     L+G+K D  
  KKY18889.1 187 FNKT-AIPFLIGTKYDHF 203
                 9996.66689*****964 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.1   5.6e-27     2e-23       1     119 [.      88     201 ..      88     202 .. 0.91

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 5.6e-27
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 Kv +vGd+++GKtsl+ ++ve++ +e++ +t+gv+f++k++ +i++       ++++++iWD++Gq +f ++ pl +++a ++++++d   +++ +++k
  KKY18889.1  88 KVGMVGDAQIGKTSLMVKYVEGSWDEDYIQTLGVNFMEKTI-SIRN-------TEITFSIWDLGGQREFVNMLPLVCNDAVAILFMFDltrKSTLNSIK 178
                 899***********************************998.4543.......479********************************7433344789* PP

                 HHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  97 eWlkelkkvagkspvilvgnkiD 119
                 eW+++ +  +++++ +l+g+k+D
  KKY18889.1 179 EWYRQGRGFNKTAIPFLIGTKYD 201
                 *********************99 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.1   3.5e-10   1.3e-06      15     101 ..      87     178 ..      76     197 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 3.5e-10
                 EEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEE..EEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHH CS
         Arf  15 lrilllGLDnaGKtTilkklkleelvt.tvPTigfnv..eelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeak 101
                 +++ ++G  + GKt ++ k+ +++ ++  + T+g n   ++++i   +++f++wD+GGq++  ++     ++  a++f+ D + ++ l++ k
  KKY18889.1  87 IKVGMVGDAQIGKTSLMVKYVEGSWDEdYIQTLGVNFmeKTISIrnTEITFSIWDLGGQREFVNMLPLVCNDAVAILFMFDLTRKSTLNSIK 178
                 67789999999************9987688999988622567663356899***********999999999999999999999888887766 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   5.4e-08   0.00019       3     125 ..      90     204 ..      88     226 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 5.4e-08
   Gtr1_RagA   3 LLmGksgsGKtsmr.siiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletlke 100
                  ++G  + GKts+  + +        +++lg+    +  ++r + ++t+++wD+gGq++fv+         + ++  +++++fD +    +++l+++ke
  KKY18889.1  90 GMVGDAQIGKTSLMvKYVEGSWDEDYIQTLGVNFMEKTISIR-NTEITFSIWDLGGQREFVNML-----PLVCNDAVAILFMFDLT---RKSTLNSIKE 179
                 578999999999651555555555556678888777777775.7789**************986.....6678888899******9...5556666666 PP

   Gtr1_RagA 101 ilealrqyspeakvfvlihKmDliq 125
                   ++ r +++ a  f +  K D   
  KKY18889.1 180 WYRQGRGFNKTAIPFLIGTKYDHFV 204
                 6666666666666666666666654 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.066   2.4e+02       5      40 ..      68     103 ..      64     117 .. 0.83
   2 ?   10.2   0.1   8.2e-05      0.29     186     235 ..     116     168 ..     105     170 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.066
                 XXXXXXXXXXXXXXXE..EEEEEEEESTTSSHHHHH CS
     G-alpha   5 saidkslkaerkarkkkrevkllllGqseSGKsTil 40 
                 ++ +++ + +++  k++  +k+ ++G ++ GK++++
  KKY18889.1  68 KQYQDQARPQSQPSKNSVVIKVGMVGDAQIGKTSLM 103
                 56667777778888888999*************985 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 8.2e-05
                 ----SEEEEEEEC...T-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEG CS
     G-alpha 186 lktvGisetkfev...dsklefrivdvgGqrserkkWvpffddvdaiiFlvsl 235
                 ++t+G++ ++  +   +++++f i+d+gGqr+  +    + +d+ ai+F+  l
  KKY18889.1 116 IQTLGVNFMEKTIsirNTEITFSIWDLGGQREFVNMLPLVCNDAVAILFMFDL 168
                 577888877777777977999**********6644444455999999999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1505.73
//
Query:       KKY18890.1  [L=354]
Description: putative kyphoscoliosis peptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-12   45.6   0.0    1.4e-11   44.8   0.0    1.4  1  Transglut_core  Transglutaminase-like superfamily


Domain annotation for each model (and alignments):
>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   7.9e-16   1.4e-11       3     111 ..      18     134 ..      16     135 .. 0.81

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 7.9e-16
  Transglut_core   3 laeeltagakdplekakaiyewvrknveys.aprrtpgsrd..aeavletgkGncedfaslfvallRalGipaRvvtgyls....geeekeq... 87 
                     lae+lta   ++++ka+ai +w+++n+ y+ ++    + r   + ++l +g ++ce+fa lf++l+ ++G+++ v++g  +    +         
      KKY18890.1  18 LAEQLTAPFLSRTDKARAIFTWLHHNILYDvQSFFAGTVRPstPASTLASGLAVCEGFAGLFTTLATHAGLESLVISGHGKgfgyT-----Alqp 107
                     7899999999********************755544444446799********************************998833332.....1344 PP

  Transglut_core  88 ...svasedaHawvevylegygWvplD 111
                        +   +++Haw+ v ++g+ W  +D
      KKY18890.1 108 gqaIPPFQGNHAWNVVKIDGDEWKLID 134
                     5455555667*************7666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       200  (0.0111551); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 2221.63
//
Query:       KKY18891.1  [L=937]
Description: putative na+ h+ antiporter nha1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      8e-90  302.3  39.8    1.1e-89  301.9  39.8    1.1  1  Nha1_C          Alkali metal cation/H+ antiporter Nha1 C term
    3.1e-30  105.2   5.2    3.7e-30  105.0   5.2    1.1  1  Na_H_Exchanger  Sodium/hydrogen exchanger family
  ------ inclusion threshold ------
       0.14   11.5   0.1       0.23   10.8   0.1    1.2  1  YitT_membrane   Uncharacterised 5xTM membrane BCR, YitT famil
       0.28   11.3   0.4        0.7   10.0   0.4    1.6  1  YrhC            YrhC-like protein
       0.47   10.1   4.0         12    5.6   0.5    2.4  2  CRM1_repeat_2   CRM1 / Exportin repeat 2


Domain annotation for each model (and alignments):
>> Nha1_C  Alkali metal cation/H+ antiporter Nha1 C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.9  39.8     3e-93   1.1e-89       1     463 [.     227     837 ..     227     840 .. 0.84

  Alignments for each domain:
  == domain 1  score: 301.9 bits;  conditional E-value: 3e-93
      Nha1_C   1 WMnRLPrldsqsrSfSlrrvdtsdtsedekkepefppgtlgppvrpaGgflRRqkeedrskkksrsssererrqrekkkwddglglGgpisqsaifpqr 99 
                 WM+RLPr++sqsrS+   ++  s++s +++++p+fpp tl ppv+++ +flRRq+eed s+ +sr+ss   r+ r++k++d  l +Gg++++sai p r
  KKY18891.1 227 WMDRLPRISSQSRSM---AK--SEESLSSLEKPQFPPDTL-PPVGLPRNFLRRQREEDTSRPGSRASS--LRPIRRRKTRDHELRPGGKVEESAIRPVR 317
                 ***************...54..5888889999********.***************************..67777799********************* PP

      Nha1_C 100 rseseeepessteeeeseeesepesessatsseseeedeseseesperkeekkeeeeppvevYqEGdkiIiEdeeGevlevedkpkeeeeerekssk.. 196
                 rse+  ++++s   +++  ++e+ +e+ a+++ + e+ e++++ sp     ++ +e+  +ev++EGd++IiEdeeG+v+++e ++ e++ee  ++++  
  KKY18891.1 318 RSEQLLAQQESG--SDTLLDQEKGEEERAQRRAAYETGEISEPPSP-----TRPQEDADIEVFEEGDELIIEDEEGNVIRQESTKGESPEEIARHISqt 409
                 *88765533333..33323333333333333334344455666666.....8999***********************************955555556 PP

      Nha1_C 197 ................................seksshsleslkrrlsevs..............keeekekr.kekkksk....rkhekarAYqfgnt 244
                                                 +++++h+  +++++l+ ++              +e++ +k+ k+    k    rk+++a+AYqfgnt
  KKY18891.1 410 rrdlaaettgehakhkhephgktegeeieevlEDAAGHPETAIRKQLGRFRglsmskkpadeagpSETRPAKKkKT----KpapeRKRGPAHAYQFGNT 504
                 88899*******************************************9999999999988655533333333233....24556************** PP

      Nha1_C 245 IIvEdEDGEVikrYkipnpks............keakkksrkrsssvvskalsavGlkskekaae.............ksskkskaeeeeeeeddkkir 318
                 IIvEdEDGEV+k+ +ip+ ++            k+ k    ++ ++++++++++vGl++++ a+              +  + +++++ ++e+dd+ ir
  KKY18891.1 505 IIVEDEDGEVVKKITIPAGDRprrppgesgwleKTGKVMGGDDMKKGLTRMGTWVGLGGGSVADAdkaavnaaaetagDGGTMKVEHSPDDESDDEGIR 603
                 *****************66555779999***99999999999****************998777799**********988889999999999******* PP

      Nha1_C 319 ftiggv......................grrmtkedfirevqkldpktrkevvdqsdaskavkelakkd...................rkltpapkerk 376
                  t+ +                       grrm+k+dfi+++++ldpk+r e +++s+as+ vk+  +++                   r+ +  +++ +
  KKY18891.1 604 YTVSKAerhgpfgtkrekpgdpptvvssGRRMSKQDFIKQIKSLDPKSRIEALQESTASEGVKRDIQRQanvpmveeepdyftnhsrgRTRSSTAPSSS 702
                 ***************************************************************998888899999999999998888844444444466 PP

      Nha1_C 377 easqaseseeseeseedeeeesseedsssdeeseeee.................................taaerrrrlaalessededseddgt.... 438
                 ++  + e++++++  +d++  ++++ +s+ + ++ +                                  taa+rrr   +  +++d+++e + +    
  KKY18891.1 703 RPLPEGETPSPKQIPQDRTGLEQGQPRSKANPTNTSPppplqrvetseslesvdipihnvtaalarygqdTAAARRRERLSRTDVSDSEQEANVSpsgr 801
                 777777777777777777777777777777776655599******************************988888877544455554444444447888 PP

      Nha1_C 439 .........eegETaaERrRRlaALGelsa..dedd 463
                          + gETaaE+rRRlaALG + +  +++d
  KKY18891.1 802 gipqdsdseDIGETAAEKRRRLAALGTSRDeeSSSD 837
                 9999999999*******************9653444 PP

>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0   5.2     1e-33   3.7e-30     209     379 ..      10     204 ..       1     206 [. 0.94

  Alignments for each domain:
  == domain 1  score: 105.0 bits;  conditional E-value: 1e-33
                     CTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHH.HHHHHTTHHHH.HHHHHHHHHHHHHHHHHHHHSXHHHHHX...XHHHHHHHHH CS
  Na_H_Exchanger 209 dddrelevllvlllallaallaellgvsgilgaflaGlvls.eyefsnklsek.lesfreglfnplfFvlvGlsldlkvlnn...hlsvlilvll 298
                       dre++++++++lal++a+ ++llg++++l  f+aG+ +s +++f +k++e+ ++++++ l+n ++Fv++G  +++  +nn   +l  + lv++
      KKY18891.1  10 IIDRESFLVFYFVLALFCAGSGSLLGMDDLLIGFAAGVGFSnDGWFTEKTEEShVSNVIDLLLNLAYFVYFGSIIPWDQFNNpsiGLVPWKLVVI 104
                     589***************************************************************************9999**9999******* PP

                     HHHHHHTHHHHHHHHHTTTX..SSXHHHHHHCC.CCSS.BHHHHHHHHHHHHHH........XHHHH.......TT.SSTTTCSTSXHHHHHHHH CS
  Na_H_Exchanger 299 ilvaillgrilavflllrll..glslrealiig.fgglqrgavalalaalgpal........gllar.......el.yallivvvlftvlvqGls 374
                     +l++i+++ri+a ++l++++   +++real++g fg++++ga+ +a++a+++++        +l+++       +l ++++++ v+ +++v+G+s
      KKY18891.1 105 ALFVIFFRRIPAMLALKPIIpdVKTWREALFAGhFGPIGVGAIFAAILARAELEtdgttplaELPTEdpdykliQLiWPITTFLVIASIIVHGSS 199
                     ********************977*******************************88887666555559999999999****************** PP

                     HHHHH CS
  Na_H_Exchanger 375 lkpll 379
                     +++++
      KKY18891.1 200 IAVFT 204
                     *9875 PP

>> YitT_membrane  Uncharacterised 5xTM membrane BCR, YitT family COG1284
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   6.4e-05      0.23      75     169 ..     103     205 ..      96     226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.4e-05
  YitT_membrane  75 ailllsvfldll.alppvkpltndp..llaaifggvllGiGvGivf.....ragastGGtdiialilnkktglsvgkilliidlvivllagfvfdi 162
                    +i+l+ +f   + a+   kp+++d     +a+f+g +  iGvG +f     ra+  t+Gt+ +a + ++  ++++ +++  i  ++v+++++v + 
     KKY18891.1 103 VIALFVIFFRRIpAMLALKPIIPDVktWREALFAGHFGPIGVGAIFaailaRAELETDGTTPLAELPTEDPDYKLIQLIWPITTFLVIASIIVHGS 198
                    34444444444457777888888865566899999999999998874444478999**************************************** PP

  YitT_membrane 163 etalysl 169
                      a+++l
     KKY18891.1 199 SIAVFTL 205
                    9999997 PP

>> YrhC  YrhC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.4   0.00019       0.7      17      61 ..      71     114 ..      68     119 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00019
        YrhC  17 LLalsaFLyiGlviPseaketlkksillgaivvfLllaflflrrs 61 
                 LL l  F y+G +iP ++  +     l++  +v+++l ++f+rr+
  KKY18891.1  71 LLNLAYFVYFGSIIPWDQ-FNNPSIGLVPWKLVVIALFVIFFRRI 114
                 99*************954.55566778888888888888888886 PP

>> CRM1_repeat_2  CRM1 / Exportin repeat 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2    0.0044        16      27      41 ..     379     393 ..     377     400 .. 0.85
   2 ?    5.6   0.5    0.0034        12      27      39 ..     505     517 ..     503     520 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0044
  CRM1_repeat_2  27 liveneeGeivretv 41 
                    li+e+eeG+++r++ 
     KKY18891.1 379 LIIEDEEGNVIRQES 393
                    899*********876 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0034
  CRM1_repeat_2  27 liveneeGeivre 39 
                    +ive+e+Ge+v+ 
     KKY18891.1 505 IIVEDEDGEVVKK 517
                    8**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (937 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.49
# Mc/sec: 5796.70
//
Query:       KKY18892.1  [L=212]
Description: hypothetical protein UCRPC4_g04737 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.071   13.2   2.1       0.11   12.6   2.1    1.3  1  NS3_envE  Non-structural protein NS3/Small envelope protein E


Domain annotation for each model (and alignments):
>> NS3_envE  Non-structural protein NS3/Small envelope protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.1   6.3e-06      0.11       8      43 ..      31      66 ..      25      71 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.3e-06
    NS3_envE  8 dhalvvqvlfilvvlivvlliviallkvikLClvlc 43
                + a  +q + il+++iv++l v     vi+LC+ l 
  KKY18892.1 31 TNAAAGQEFHILLIMIVLILTVFFCHSVIRLCMILM 66
                5566677788888888888888888899*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1463.20
//
Query:       KKY18893.1  [L=267]
Description: putative u5 snrnp complex [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-32  109.8   3.7    2.7e-05   24.8   0.1    6.1  6  WD40         WD domain, G-beta repeat
    2.2e-08   34.3   0.0      0.079   13.3   0.0    4.1  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
       0.13   11.6   0.0          3    7.1   0.0    2.3  2  WD40_like    WD40-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.1e-07   0.00064       3      34 ..      12      44 ..      10      49 .. 0.90
   2 !   22.9   0.0   1.8e-08   0.00011       8      38 .]      60      92 ..      53      92 .. 0.78
   3 !   12.9   0.0   2.6e-05      0.16      12      38 .]     107     133 ..      99     133 .. 0.91
   4 !   24.8   0.1   4.5e-09   2.7e-05       2      38 .]     138     175 ..     137     175 .. 0.89
   5 !   17.1   0.0   1.3e-06    0.0077      13      38 .]     201     225 ..     184     225 .. 0.71
   6 !    7.1   0.0    0.0018        11       1      20 [.     229     249 ..     229     252 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.1e-07
                EEEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS
        WD40  3 clrtltGH.ssvtslafspdgawlasGsdDgtv 34
                ++ +ltGH s v + +f++ g+ +asGs+D+++
  KKY18893.1 12 PIMELTGHsSEVFAARFDQTGQHIASGSMDRSI 44
                6889****666********************98 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 1.8e-08
                ESSSS.EEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40  8 tGHss.vtslafspdgaw.lasGsdDgtvriWd 38
                 GH   +++la+++ g+  lasGsdDg + +Wd
  KKY18893.1 60 VGHEEvINCLAVNRRGQElLASGSDDGFICLWD 92
                4995557****777777735799*********9 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 2.6e-05
                 SEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriWd 38 
                 +vt++a +  g+ + sG+ D+ +++Wd
  KKY18893.1 107 PVTAVAIPEAGNEIYSGGIDNDIKVWD 133
                 59************************9 PP

  == domain 4  score: 24.8 bits;  conditional E-value: 4.5e-09
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 q ++t tGH + vtsl +spd++ l+s s D tvr Wd
  KKY18893.1 138 QVVYTMTGHtDTVTSLEVSPDSQALLSNSHDSTVRTWD 175
                 568899***666**************8777*******9 PP

  == domain 5  score: 17.1 bits;  conditional E-value: 1.3e-06
                 EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriWd 38 
                 +   ++sp g+ +a+Gs D+t  +Wd
  KKY18893.1 201 I-RASWSPKGDRIAAGSGDRTAVVWD 225
                 3.445***********99*******9 PP

  == domain 6  score: 7.1 bits;  conditional E-value: 0.0018
                 TEEEEEEESS.SSEEEEEEET CS
        WD40   1 gqclrtltGH.ssvtslafsp 20 
                 g++l++l GH + v++++f p
  KKY18893.1 229 GKLLYKLPGHkGTVNDVRFAP 249
                 688999****555****9887 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.021   1.3e+02      33      87 ..      15      69 ..       1      74 [. 0.71
   2 !    5.8   0.0    0.0027        16      38      79 ..      63     105 ..      57     114 .. 0.82
   3 !    8.0   0.0    0.0006       3.6      36      88 ..     103     154 ..      98     158 .. 0.89
   4 !    7.7   0.0    0.0007       4.2      26      67 ..     137     176 ..     125     179 .. 0.81
   5 !   13.3   0.0   1.3e-05     0.079      42      87 ..     201     245 ..     184     250 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.021
  ANAPC4_WD40 33 eedkedsevrsLaWkpdgklLavaysdg.evrlldaesgkvvhslsvksekavtcl 87
                 e ++++sev + ++ + g+ +a +  d   +   d e+g  ++   v++e+ ++cl
   KKY18893.1 15 ELTGHSSEVFAARFDQTGQHIASGSMDRsIIASWDLETGLRIRRH-VGHEEVINCL 69
                 447889999999***********9988736788999999776655.3444458777 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0027
  ANAPC4_WD40  38 dsevrsLaWkpdgk.lLavaysdgevrlldaesgkvvhslsvk 79 
                  ++ +++La +  g+ lLa + +dg + l d  +++ ++s++++
   KKY18893.1  63 EEVINCLAVNRRGQeLLASGSDDGFICLWDPRQKEAIESIETD 105
                  56688888888875499********************999876 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0006
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  ++d  v+++a  + g+ +  +  d+ +++ da + +vv +++ +++ +vt+l+
   KKY18893.1 103 ETDFPVTAVAIPEAGNEIYSGGIDNDIKVWDARKLQVVYTMTGHTD-TVTSLE 154
                  56778999999999***************************99988.598875 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0007
  ANAPC4_WD40  26 gqrvwtleedkedsevrsLaWkpdgklLavaysdgevrllda 67 
                   q v+t+  +++  +v+sL+ +pd + L    +d++vr  d+
   KKY18893.1 137 LQVVYTM--TGHTDTVTSLEVSPDSQALLSNSHDSTVRTWDI 176
                  4666666..89999***********************98876 PP

  == domain 5  score: 13.3 bits;  conditional E-value: 1.3e-05
  ANAPC4_WD40  42 rsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                     +W+p+g  +a +  d +  + d+++gk++ +l+ ++  +v+ +
   KKY18893.1 201 IRASWSPKGDRIAAGSGDRTAVVWDVNTGKLLYKLPGHKG-TVNDV 245
                  4558******************************999887.46655 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0   0.00051         3       2     129 ..      22     155 ..      21     171 .. 0.50
   2 ?    1.7   0.0     0.021   1.3e+02       9      41 ..     206     238 ..     200     252 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00051
   WD40_like   2 eiYsidiskkgslilyGgkddkc.tvlkleslesvsivesfedSvifvkllddd...lilvvtlDGtillslleneeevenekieedistvkv..iddk 94 
                 e+++  +++ g+ i+ G+ d  + +  +le++  +    +  + vi +  ++     l+  ++ DG i l + +++e +e+ + +  ++ v +   +++
  KKY18893.1  22 EVFAARFDQTGQHIASGSMDRSIiASWDLETGLRIRRHVGH-EEVINCLAVNRRgqeLLASGSDDGFICLWDPRQKEAIESIETDFPVTAVAIpeAGNE 119
                 55666666666666666654432123344444444444333.334444444432222444556666665555555555555555555555443114566 PP

   WD40_like  95 lliGtnkGsiyvfs.kdlqleevllgqsseIkeiki 129
                 ++ G+   +i v++ + lq++ ++ g++  + ++++
  KKY18893.1 120 IYSGGIDNDIKVWDaRKLQVVYTMTGHTDTVTSLEV 155
                 666666666666642355566666666655555544 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.021
   WD40_like   9 skkgslilyGgkddkctvlkleslesvsivesf 41 
                 s+kg+ i+ G+ d ++ v +++++++ + + + 
  KKY18893.1 206 SPKGDRIAAGSGDRTAVVWDVNTGKLLYKLPGH 238
                 78999******************9988776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1840.28
//
Query:       KKY18894.1  [L=192]
Description: putative bet3 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-37  127.8   0.0    3.1e-37  127.5   0.0    1.1  1  TRAPP     Transport protein particle (TRAPP) component
  ------ inclusion threshold ------
      0.069   12.0   0.0      0.083   11.7   0.0    1.1  1  PNGaseA   Peptide N-acetyl-beta-D-glucosaminyl asparaginase a


Domain annotation for each model (and alignments):
>> TRAPP  Transport protein particle (TRAPP) component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.5   0.0   3.4e-41   3.1e-37       2     145 ..      28     177 ..      27     178 .. 0.93

  Alignments for each domain:
  == domain 1  score: 127.5 bits;  conditional E-value: 3.4e-41
       TRAPP   2 afllgelvsylqrds.kdveevekrLekmGyrvGlrllelllarer.pretdilevlkfickdlWkllfgkqidnlktnhrge...yvltdnefpltrf 95 
                 ++++g +v++l++d+ +d+ ev+k+LekmGy++G+rl+e++la++   r + ++e++++i+k+++k++++++++++++ ++++   +v+++n  pl++f
  KKY18894.1  28 TLTYGTIVAQLCQDYdNDYVEVNKQLEKMGYNIGCRLIEDFLAKSGsGRCSSFRETAEMISKVGFKIFLNITPTVTNWTNDNKqfsLVFDEN--PLADF 124
                 799************558**************************776899*****************************9999988899999..***** PP

       TRAPP  96 velpke..ls....ylaflcGiirGaLenlgfpakVtahelpsdelrgrttfeikv 145
                 velp++  ++    ++++lcGi+rGaLe+++++  V+ah + sd+lrg+ t+e+++
  KKY18894.1 125 VELPDDgrAQdelwFSNILCGILRGALEMVQMQ--VEAHFV-SDVLRGNDTTEMRI 177
                 ****9998557899*******************..***877.66********9987 PP

>> PNGaseA  Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.2e-06     0.083     134     201 ..      77     144 ..      49     160 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.2e-06
     PNGaseA 134 lletaeaadlilpisarksasnsssafslpsdkatvtlslprntsravlsisasgqaaeEfWysNvls 201
                  ++ +e+a++i  +  +   + ++ + +  +d+ + +l++++n    ++++   g+a++E W+sN+l 
  KKY18894.1  77 CSSFRETAEMISKVGFKIFLNITPTVTNWTNDNKQFSLVFDENPLADFVELPDDGRAQDELWFSNILC 144
                 55667889999999988888889999999999**********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1249.48
//
Query:       KKY18895.1  [L=796]
Description: putative camp-dependent protein kinase pathway protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-05   23.1   0.3    9.4e-05   22.2   0.3    1.4  1  LisH      LisH


Domain annotation for each model (and alignments):
>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.3   5.3e-09   9.4e-05       4      25 ..      44      65 ..      44      66 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 5.3e-09
                HHHHHHHHHHCT-HHHHHHHHH CS
        LisH  4 NrLIydYLvkeGyeetAeaFek 25
                N +IydY++k+G+ e+A+a+ +
  KKY18895.1 44 NTYIYDYFLKHGFYESARALVR 65
                88*****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1302  (0.0726198); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:00.55
# Mc/sec: 4319.46
//
Query:       KKY18896.1  [L=604]
Description: putative apses transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.045   13.6   0.1        0.6   10.0   0.1    2.3  1  KilA-N    KilA-N domain


Domain annotation for each model (and alignments):
>> KilA-N  KilA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   3.3e-05       0.6       2      86 ..      39      99 ..      38     128 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 3.3e-05
      KilA-N  2 qvnkqeiiirrvkdgyinatkllkaaaedtkriddWlrnkstkelleeleedynisekkksektisenrkakpgrlqGtYvhpdl 86
                +vn+++++ rr+++++ina+kl   a   +++  + l++++  ++++  +++                       l+G++++ + 
  KKY18896.1 39 EVNGIHVT-RREDNNFINASKLMMVARVPRQERYRLLKSEQNLHFVKRGSMH-----------------------LRGIWIPLER 99
                56666665.6669***********9954555558899999999999888765.......................4555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 3631.32
//
Query:       KKY18897.1  [L=1223]
Description: putative abc transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-50  171.1   0.0    3.3e-31  108.6   0.0    2.9  2  ABC_tran      ABC transporter
    1.7e-39  136.1  22.6    4.7e-27   95.3  13.8    3.2  3  ABC_membrane  ABC transporter transmembrane region
    3.7e-08   34.1   0.0     0.0047   17.4   0.0    2.6  2  AAA_23        AAA domain
    1.8e-07   31.3   0.9        1.5    8.5   0.2    4.3  4  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
      2e-07   30.7   2.0        0.8    9.1   0.2    5.1  3  SMC_N         RecF/RecN/SMC N terminal domain
    8.6e-07   28.6   0.8     0.0016   18.1   0.3    2.6  2  AAA_29        P-loop containing region of AAA domain
    1.3e-06   28.7   0.1       0.12   12.7   0.0    3.3  3  AAA_22        AAA domain
      8e-06   26.3   0.3       0.14   12.5   0.0    3.0  2  AAA_16        AAA ATPase domain
      1e-05   25.6   0.2      0.082   13.0   0.0    3.4  3  MMR_HSR1      50S ribosome-binding GTPase
      4e-05   23.7   0.0       0.31   11.1   0.0    2.7  2  Dynamin_N     Dynamin family
    0.00011   22.1   0.0       0.35   10.7   0.0    2.9  2  RsgA_GTPase   RsgA GTPase
    0.00051   19.5   0.0     0.0081   15.5   0.0    2.3  2  FtsK_SpoIIIE  FtsK/SpoIIIE family
     0.0024   18.0   0.2     0.0055   16.8   0.2    1.6  1  DUF87         Helicase HerA, central domain
     0.0069   16.1   0.0        2.4    7.8   0.1    2.4  2  AAA_15        AAA ATPase domain
     0.0081   15.8   0.0        0.1   12.2   0.0    2.4  2  AAA_25        AAA domain
  ------ inclusion threshold ------
      0.017   14.8   0.0      0.071   12.8   0.0    2.0  2  IstB_IS21     IstB-like ATP binding protein
      0.018   14.1   0.0       0.17   10.9   0.0    2.1  2  T2SSE         Type II/IV secretion system protein
      0.036   12.9   1.4        3.2    6.4   0.0    2.5  3  ABC_ATPase    Predicted ATPase of the ABC class
      0.053   12.2   0.1       0.21   10.2   0.0    1.8  2  AAA_13        AAA domain
      0.075   12.3   0.1          8    5.7   0.0    2.4  2  Zeta_toxin    Zeta toxin
       0.14   11.6   0.0        2.6    7.5   0.0    2.3  2  AAA_7         P-loop containing dynein motor region
       0.95    9.5   4.9        9.4    6.3   0.5    3.1  3  PRIMA1        Proline-rich membrane anchor 1
        5.6    6.6   7.2         10    5.7   0.9    2.2  2  BSP_II        Bone sialoprotein II (BSP-II)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   7.3e-19   5.7e-16       1     136 [.     398     532 ..     398     533 .. 0.83
   2 !  108.6   0.0   4.3e-34   3.3e-31       1     134 [.     998    1138 ..     998    1140 .. 0.97

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 7.3e-19
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHHST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsklg 93 
                 l++v++++ +g +  ++Ge  aGKS Ll++l+g+l+ ++Ge+            ++    +g++ q+p l++ + +ren      +++++ +++++   
  KKY18897.1 398 LHDVTISFPPGLT-IVFGEVAAGKSALLQALLGELDRNAGEL------------HRPTGMVGYCAQTPWLQSMS-IRENilfgapYDNQRYKAVIEACA 482
                 6788888888865.578************************9............7899*************999.*********966666555555444 PP

                 TGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  94 lke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 l +        + +++++++  LSgGq+ rvalara+ +++++lllD+p 
  KKY18897.1 483 LANdlvnfkhGDLSNIGENGIGLSGGQRARVALARAVYSQAEILLLDDPI 532
                 44444444435566678888*****************************7 PP

  == domain 2  score: 108.6 bits;  conditional E-value: 4.3e-34
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxx RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsk 91  
                  l+++s+ +k+g+ +aivG++G+GKStL+++l+g + p++G+il+d+ d+ + e++ lr+++ ++ q+p lfp++ +r+n      + dee+e++l+k
  KKY18897.1  998 LSDLSFRIKAGSNTAIVGRTGSGKSTLAMALLGTVLPDSGRILIDNIDIASVEKQALRHRVTFVAQDPVLFPGS-MRQNldpldeYTDEECEAVLKK 1093
                  6799**********************************************************************.9999*****999999******* PP

                  STTGG..TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEES CS
                  xxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   92 lglke..lkdtvvksspssLSgGqkqrvalarallkkpkllllDE 134 
                  +  k+  + +t v+ ++++LS+Gq+q + lar+ll+++++++lDE
  KKY18897.1 1094 IAGKHgwTLTTEVDAGGKNLSQGQRQLIGLARTLLRRSPIVILDE 1138
                  *9999888899999999***************************9 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1       0.2   1.5e+02      41      86 ..      12      57 ..       5      68 .. 0.72
   2 !   43.4   0.2     4e-14   3.1e-11      96     261 ..     122     285 ..     114     294 .. 0.90
   3 !   95.3  13.8   6.1e-30   4.7e-27      12     269 ..     664     933 ..     653     937 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.2
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  ABC_membrane 41 nvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilr 86
                  + y+ll+l++ ++++++ +   ++   t er + ++ ++l++k l 
    KKY18897.1 12 IAYALLILVASVISSQVQVSGLWYGRRTYERSRGEMIAMLYEKTLA 57
                  4556666666666666666666666889999999999999998875 PP

  == domain 2  score: 43.4 bits;  conditional E-value: 4e-14
                   CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH CS
  ABC_membrane  96 svGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirt 192
                   s G++l+++ ndv+ +++ ++e+ gl+  +l +++++++++ ++gw   l++++++++   ++a++ak+l+k + ++  a++   + + + ++ ir 
    KKY18897.1 122 SMGKILNLMRNDVYEISQRFWEFQGLVEKPLGLVLSIVLIWRLIGWP-CLIGIVTVFIAQSLNALLAKVLMKWEVTKRAATDAKLKKVSQFVESIRH 217
                   679*******************************************8.6************************************************ PP

                   HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHH CS
  ABC_membrane 193 VkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlv 261
                   ++ +g++++ ++ + +a++e+++ +i  + ++++li +t+++++ ++ +a++++++      l ++ ++
    KKY18897.1 218 LRWYGWQDAWCTDIMDARQEELHLQII-CSIWRILIEFTNIFASGMFPVAAFWAYSGLAGMPLRIDIAF 285
                   ************************986.55667888899999999999888888877766666666644 PP

  == domain 3  score: 95.3 bits;  conditional E-value: 6.1e-30
                   HHHHHHHHHHHHHHHHHHHSSTCCHH............HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSC CS
  ABC_membrane  12 gvlsplfplvlgrildtlldkgdpet............ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtns 96 
                    ++s+   ++l+++ + + + +   +            e++n ++l ++l+++a +++ l+ s ++ v+   + k +  k++ ++ ++  +f+dt++
    KKY18897.1 664 RLVSIGETWFLKQWGEAYDTLKIEVKshgpfsdlpppeENINPWLLGFTLIAIAKAVTFLIASAFMLVIVYSAGKSMFEKVMARVSHATFRFYDTTP 760
                   555666666666666666655443335556677777889********************************************************** PP

                   HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH CS
  ABC_membrane  97 vGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtV 193
                   vG+l++rlt+d+ +++  ++e++ ++    ++ ++gliv+  + + + +  +++++ +++ +  + + +++l++ e+ +++++ s +   ++g+ tV
    KKY18897.1 761 VGRLMNRLTSDITTIDGNISETFQTVAAGAISWISGLIVIASVTPAFLVFSIIVTLAFAFTFRRFLPSSQSLRRLEMVSLSPLMSNFGALVEGLMTV 857
                   ************************************************************************************************* PP

                   HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHH CS
  ABC_membrane 194 kafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfai 269
                   +af ++++f+e+  + +++++k    +  ++++++ +++l++ +++++++++++++  s  l+   l++  sl   
    KKY18897.1 858 RAFHAQHRFQERVIEVVDNFQKMDHYYWSLQSWFMYRINLIADFAMLIITLIAIYTNVSPGLTAFVLIAAQSLVGA 933
                   *******************************************************999988888887877777665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     6e-06    0.0047      11      39 ..     399     427 ..     388     431 .. 0.94
   2 !   13.7   0.0   8.5e-05     0.066      22      39 ..    1011    1028 ..     997    1061 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6e-06
      AAA_23  11 rdqeidFskgltlItGpNGaGKTTildAi 39 
                 +d++i F +glt+++G+  aGK+++l+A+
  KKY18897.1 399 HDVTISFPPGLTIVFGEVAAGKSALLQAL 427
                 689*************************8 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 8.5e-05
      AAA_23   22 tlItGpNGaGKTTildAi 39  
                  t+I+G +G+GK+T+  A+
  KKY18897.1 1011 TAIVGRTGSGKSTLAMAL 1028
                  89************9998 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0     0.003       2.4       1      20 [.     409     428 ..     409     443 .. 0.87
   2 ?    5.4   0.0     0.018        14     238     298 ..     506     564 ..     449     569 .. 0.78
   3 !    8.5   0.2     0.002       1.5       2      20 ..    1011    1029 ..    1011    1052 .. 0.81
   4 ?    4.3   0.0     0.039        30     236     266 ..    1112    1139 ..    1111    1140 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.003
      AAA_21   1 lnvliGpNgsGKSnLLdald 20 
                 l+++ G  ++GKS LL+al 
  KKY18897.1 409 LTIVFGEVAAGKSALLQALL 428
                 699****************4 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.018
      AAA_21 238 SdGtkrllalltallralkkgsllliDEpEngLHPkllrrll.ell..kelsrngaQviltTHS 298
                 S G++   al+ a+++++    +ll+D+p + L+++  + ++ + l  ++ ++    v+l+TH 
  KKY18897.1 506 SGGQRARVALARAVYSQA---EILLLDDPISALDHQTAEFIIqRCLggNLVKS--RTVVLVTHR 564
                 777777778888888888...9********************77779755555..899999996 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.002
      AAA_21    2 nvliGpNgsGKSnLLdald 20  
                  ++++G+ gsGKS+L  al 
  KKY18897.1 1011 TAIVGRTGSGKSTLAMALL 1029
                  79************99994 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.039
      AAA_21  236 elSdGtkrllalltallralkkgsllliDEp 266 
                  +lS+G+++l++l+  llr+    +++++DE+
  KKY18897.1 1112 NLSQGQRQLIGLARTLLRRS---PIVILDEV 1139
                  58****************99...*******6 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0037       2.9     136     200 ..     504     566 ..     397     584 .. 0.57
   2 !    9.1   0.2     0.001       0.8      26      49 ..    1010    1030 ..    1000    1142 .. 0.68
   3 ?    0.9   0.0      0.32   2.5e+02     168     210 ..    1161    1203 ..    1153    1208 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0037
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH..HHCTTSEEEEE-SSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk..eksknaQfivislree 200
                  LSgG+++ vala       +++a + llD+  +aLD++  + + ++    +  k+  ++ +++r e
  KKY18897.1 504 GLSGGQRARVALA----RAVYSQAEILLLDDPISALDHQTAEFIIQRCLggNLVKSRTVVLVTHRVE 566
                 4777777766654....34567777777777777777777766555432234445555555666655 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.001
                  EEEEEESTTSSHHHHHHHHHHHCT CS
                  xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   26 ftaivGpNGSGKsnlldAilFvLG 49  
                   taivG+ GSGKs l  A+   LG
  KKY18897.1 1010 NTAIVGRTGSGKSTLAMAL---LG 1030
                  689**********999998...55 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.32
                  TTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  168 daaLDeknvkkvaellkeksknaQfivislreemlekadklvg 210 
                   a +D +   ++ e+l+++  ++ +i i++r e ++ ad ++ 
  KKY18897.1 1161 TASIDLATSLAIQEVLHSEMRESTIITIAHRLEAVKYADYCIE 1203
                  578899999999************************9998876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0029       2.2      13      42 ..     399     427 ..     397     431 .. 0.82
   2 !   18.1   0.3   2.1e-06    0.0016      16      43 ..    1002    1029 ..     997    1039 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0029
      AAA_29  13 dghtieidlkgatlltGpsGsGKSTllDAi 42 
                 ++ ti++   g t++ G+  +GKS+ll A+
  KKY18897.1 399 HDVTISFP-PGLTIVFGEVAAGKSALLQAL 427
                 55677776.457***************886 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 2.1e-06
      AAA_29   16 tieidlkgatlltGpsGsGKSTllDAiq 43  
                  +++i+  ++t ++G++GsGKSTl  A+ 
  KKY18897.1 1002 SFRIKAGSNTAIVGRTGSGKSTLAMALL 1029
                  57787555***************76665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0    0.0003      0.23       6      60 ..     408     463 ..     403     481 .. 0.71
   2 ?   -1.3   0.0       3.1   2.4e+03      87     106 ..     861     892 ..     854     931 .. 0.54
   3 !   12.7   0.0   0.00015      0.12       5     103 ..    1008    1142 ..    1004    1177 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0003
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.sskdllrel 60 
                 g+++v+Ge+ +GK+ ll+ ll +ld+ a   +++ + v ++++ +   s ++++++
  KKY18897.1 408 GLTIVFGEVAAGKSALLQALLGELDRNAGELHRPTGMVGYCAQTPWlQSMSIRENI 463
                 899*********************85433322444444444433335555555555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.1
      AAA_22  87 rarav...ielliiDEaqhlr....s.....e 106
                 +a+++   +++ ++D++q+++    s     +
  KKY18897.1 861 HAQHRfqeRVIEVVDNFQKMDhyywSlqswfM 892
                 4555555667889******9866663433442 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 0.00015
      AAA_22    5 agilvvtGesGtGKTtllrrlleqldeeakaee...............erpevvfvtlpsst..sskdllrellralglelka.............. 70  
                   + ++++G +G+GK+tl+  ll +   ++                   +r+++v  + p++   s ++ l  l + +++e++a              
  KKY18897.1 1008 GSNTAIVGRTGSGKSTLAMALLGTVLPDSGRILidnidiasvekqalrHRVTFV-AQDPVLFpgSMRQNLDPLDEYTDEECEAvlkkiagkhgwtlt 1103
                  56789**************99999854444333777888888888774444444.233333334556667777777777777777778888888888 PP

      AAA_22   71 .........erlsseellealeqalrarav.ielliiDEaqhl 103 
                                ++  ++l   +r+  +  +++i+DE+ +l
  KKY18897.1 1104 tevdaggknL----SQGQRQLIGLARTLLRrSPIVILDEVSFL 1142
                  8777744422....33333333333333333446888888777 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00072      0.56      17      62 ..     399     455 ..     396     546 .. 0.77
   2 !   12.5   0.0   0.00018      0.14      21     143 ..    1007    1138 ..     998    1168 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00072
      AAA_16  17 ervrsgrp.elvllsGesGvGKsslvrellralekd..........ggiflrgkcdq 62 
                 ++v  + p +l+++ Ge + GKs+l+++ll +l ++           g+++++ + q
  KKY18897.1 399 HDVTISFPpGLTIVFGEVAAGKSALLQALLGELDRNagelhrptgmVGYCAQTPWLQ 455
                 555566666999******************999999776666665334445444444 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00018
      AAA_16   21 sgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde..........aesaeleawrekleeala. 106 
                  +g  +++ ++G  G+GKs+l+ +ll  +  d g  l  + d           ++  a ++ ++ ++++            + + e+ +e++e++l+ 
  KKY18897.1 1007 AG--SNTAIVGRTGSGKSTLAMALLGTVLPDSGRILIDNIDIA--------SVEKQALRHRVTFVAQDpvlfpgsmrqNLDPLDEYTDEECEAVLKk 1093
                  44..7899*****************988888555554444444........2222222244444444444444432213333333333333333334 PP

      AAA_16  107 ..........avpelagaea........srllellkrllallsrderp.lvlvlDd 143 
                                     +        s+  ++l  l++ l r      +++lD+
  KKY18897.1 1094 iagkhgwtltT--------EvdaggknlSQGQRQLIGLARTLLR---RsPIVILDE 1138
                  44455554332........0333332234444444444433333...225666666 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0041       3.2       3      22 ..     411     430 ..     410     443 .. 0.83
   2 ?   -0.5   0.0       1.6   1.3e+03      23      74 ..     558     615 ..     548     630 .. 0.64
   3 !   13.0   0.0   0.00011     0.082       2      22 ..    1011    1031 ..    1010    1071 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0041
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 +++G   +GKS L++al+ge
  KKY18897.1 411 IVFGEVAAGKSALLQALLGE 430
                 689***************97 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.6
                 TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCS....S.HHHHHH.HHHHHHHHHH CS
    MMR_HSR1  23 kaivsdkpgtTrdinegrvklkgkeielvDtpGli....e.gaseek.glgkaflale 74 
                 ++ v+++    r+i +  v++++ + ++vD +  i    + g+s+e+ +++++ ++ +
  KKY18897.1 558 VVLVTHRVELCRHIATQAVEVDHGKAYVVDFAKAIaihgHdGSSSEEdEEAQESEEQD 615
                 5688888889999999999999999999999986544441433333323333333333 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 0.00011
                  EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1    2 vaivGrpNvGKStLinaltge 22  
                   aivGr+ +GKStL  al+g+
  KKY18897.1 1011 TAIVGRTGSGKSTLAMALLGT 1031
                  69****************985 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0    0.0004      0.31       2      21 ..     411     430 ..     410     432 .. 0.95
   2 !    9.7   0.0     0.001       0.8       2      29 ..    1012    1038 ..    1011    1111 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0004
                 EEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlge 21 
                 +v+G++ +GKS++l aLlge
  KKY18897.1 411 IVFGEVAAGKSALLQALLGE 430
                 69****************97 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.001
                  EEEEBTTTTHHHHHHHHHTS--S---SS CS
   Dynamin_N    2 avvGsqSsGKSSvlnaLlgedilprgpn 29  
                  a+vG + sGKS+++ aLlg   lp +  
  KKY18897.1 1012 AIVGRTGSGKSTLAMALLGTV-LPDSGR 1038
                  79*****************86.776554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0035       2.7      92     131 ..     400     439 ..     363     444 .. 0.77
   2 !   10.7   0.0   0.00046      0.35      90     122 ..     998    1031 ..     986    1060 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0035
                  HHHHHCTTSEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  92 elkellkdktsvlvGqSGvGKStLinallpelelktgevs 131
                  +++  +   ++++ G+  +GKS+L+ all+el+ + ge+ 
   KKY18897.1 400 DVTISFPPGLTIVFGEVAAGKSALLQALLGELDRNAGELH 439
                  555666677899********************99998875 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00046
                   HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase   90 leelkellkd.ktsvlvGqSGvGKStLinallpe 122 
                   l++l+ ++k  + +++vG +G GKStL  all++
   KKY18897.1  998 LSDLSFRIKAgSNTAIVGRTGSGKSTLAMALLGT 1031
                   67788888877999**************999886 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.29   2.2e+02      39      60 ..     406     428 ..     374     431 .. 0.76
   2 !   15.5   0.0     1e-05    0.0081      37      63 ..    1006    1032 ..     995    1065 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.29
                   -..SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  39 a.shllvaGatgsGKStalntLi 60 
                   + + ++v G    GKS  l++L+
    KKY18897.1 406 PpGLTIVFGEVAAGKSALLQALL 428
                   246689***************97 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1e-05
                    GS-.SEEEE--TTSSHHHHHHHHHHHH CS
  FtsK_SpoIIIE   37 kmashllvaGatgsGKStalntLilSl 63  
                    k+ s++ ++G+tgsGKSt  ++L+  +
    KKY18897.1 1006 KAGSNTAIVGRTGSGKSTLAMALLGTV 1032
                    3447******************98655 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.2     7e-06    0.0055      26      57 ..    1011    1041 ..    1000    1046 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7e-06
       DUF87   26 lAilgsTGsGKSntvavLleellekkgatili 57  
                  +Ai+g+TGsGKS+++  Ll  +l  ++++ili
  KKY18897.1 1011 TAIVGRTGSGKSTLAMALLGTVL-PDSGRILI 1041
                  79*****************9999.77778776 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.012       9.1      15      43 ..     399     427 ..     397     477 .. 0.95
   2 !    7.8   0.1    0.0031       2.4      19      43 ..    1005    1028 ..     997    1055 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.012
      AAA_15  15 kdveidlseeltvliGkNnsGKSsileal 43 
                  dv+i++ + lt++ G+ ++GKS +l+al
  KKY18897.1 399 HDVTISFPPGLTIVFGEVAAGKSALLQAL 427
                 6899************************9 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0031
      AAA_15   19 idlseeltvliGkNnsGKSsileal 43  
                  i+  +  t ++G+ +sGKS++++al
  KKY18897.1 1005 IKAGS-NTAIVGRTGSGKSTLAMAL 1028
                  55555.79****************9 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.56   4.4e+02      34      53 ..     408     427 ..     380     434 .. 0.83
   2 !   12.2   0.0   0.00013       0.1      30      61 ..    1005    1038 ..     993    1056 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.56
      AAA_25  34 elallaGapgtGKttlaldl 53 
                 +l++++G  ++GK++l+  l
  KKY18897.1 408 GLTIVFGEVAAGKSALLQAL 427
                 799*************9876 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00013
      AAA_25   30 lpagelallaGapgtGKttlaldlalava..tGk 61  
                  + ag+ ++++G++g+GK+tla+ l  +v+  +G+
  KKY18897.1 1005 IKAGSNTAIVGRTGSGKSTLAMALLGTVLpdSGR 1038
                  678999******************9988866555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.1e-05     0.071      37      67 ..     997    1028 ..     976    1041 .. 0.79
   2 ?   -2.7   0.0       5.2     4e+03     102     121 ..    1123    1143 ..    1112    1170 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.1e-05
   IstB_IS21   37 eLatlsf.iekkenivllGpsGvGKshlaial 67  
                  +L  lsf i++  n +++G +G GKs la+al
  KKY18897.1  997 SLSDLSFrIKAGSNTAIVGRTGSGKSTLAMAL 1028
                  677888878999*******************8 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.2
   IstB_IS21  102 alkrl.lkvdllilDdlgllp 121 
                   +++l  ++ ++ilD++++lp
  KKY18897.1 1123 LARTLlRRSPIVILDEVSFLP 1143
                  44444046689*****99876 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       0.4   3.1e+02     131     156 ..     409     434 ..     401     438 .. 0.87
   2 ?   10.9   0.0   0.00021      0.17     127     162 ..    1006    1041 ..     983    1064 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.4
       T2SSE 131 lilvsGgTgsGKttllyallkeinks 156
                 l +v G    GK+ ll all e++ +
  KKY18897.1 409 LTIVFGEVAAGKSALLQALLGELDRN 434
                 67899999*************99875 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00021
       T2SSE  127 rerglilvsGgTgsGKttllyallkeinksderivt 162 
                  ++  +  + G TgsGK+tl+ all ++  ++ ri++
  KKY18897.1 1006 KAGSNTAIVGRTGSGKSTLAMALLGTVLPDSGRILI 1041
                  555667789****************99988888875 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0041       3.2     242     264 ..     405     427 ..     401     435 .. 0.90
   2 ?   -3.3   0.0       3.7   2.9e+03     330     353 ..     512     535 ..     506     614 .. 0.74
   3 ?    4.6   0.1     0.014        11     242     268 ..    1005    1032 ..    1003    1042 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0041
                 E-SSEEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 242 ipkGvtlIvGggfhGKsTLLeAl 264
                  p G+t++ G  + GKs LL+Al
  KKY18897.1 405 FPPGLTIVFGEVAAGKSALLQAL 427
                 689*******************9 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.7
                 HHHHHHHHHTT-SEEEEEGGGS-H CS
  ABC_ATPase 330 AanimealeagakllLiDEDtsAt 353
                  +++++a+  +a++lL+D   sA 
  KKY18897.1 512 RVALARAVYSQAEILLLDDPISAL 535
                 566778888888888888877773 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.014
                  E-SS.EEEEEE-TTSSHHHHHHHHHHCC CS
  ABC_ATPase  242 ipkG.vtlIvGggfhGKsTLLeAlekGv 268 
                  i+ G  t+IvG+   GKsTL  Al   v
  KKY18897.1 1005 IKAGsNTAIVGRTGSGKSTLAMALLGTV 1032
                  67776799***************97766 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00027      0.21     526     582 ..     522     576 ..     514     610 .. 0.81
   2 ?   -1.3   0.1       0.8   6.2e+02      21      36 ..    1013    1028 ..    1011    1034 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00027
      AAA_13 526 kdkivviDDPvSSLDsn.slfivfsliksrllkkkkakQlfiLTHnleffkevkkntk 582
                 + +i  +DDP+S LD + + fi+   +   l    k + + + TH +e+ + +  +  
  KKY18897.1 522 QAEILLLDDPISALDHQtAEFIIQRCLGGNL---VKSRTVVLVTHRVELCRHIATQAV 576
                 57899**********8615688888888888...88999***********99987754 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.8
      AAA_13   21 iYGwNGaGKTtLSrll 36  
                  i G+ G+GK+tL+++l
  KKY18897.1 1013 IVGRTGSGKSTLAMAL 1028
                  66999*******9987 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0      0.01         8      16      43 ..     407     434 ..     403     439 .. 0.86
   2 ?    3.9   0.0     0.037        29      21      45 ..    1013    1037 ..    1009    1046 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.01
  Zeta_toxin  16 PklillgGqpGAGKselaellkdelerq 43 
                 P l ++ G  +AGKs+l+++l  el+r+
  KKY18897.1 407 PGLTIVFGEVAAGKSALLQALLGELDRN 434
                 6788999*****************9755 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.037
  Zeta_toxin   21 lgGqpGAGKselaellkdelerqgn 45  
                  ++G +G+GKs+la +l   + ++++
  KKY18897.1 1013 IVGRTGSGKSTLAMALLGTVLPDSG 1037
                  789**********998776655555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.29   2.2e+02      37      59 ..     411     433 ..     409     439 .. 0.88
   2 ?    7.5   0.0    0.0034       2.6      30      57 ..    1005    1032 ..    1000    1051 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.29
       AAA_7  37 llvGptGtGKtviikdllkkldk 59 
                 ++ G++  GK+++++ ll +ld+
  KKY18897.1 411 IVFGEVAAGKSALLQALLGELDR 433
                 678***************99995 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0034
       AAA_7   30 lknkkpvllvGptGtGKtviikdllkkl 57  
                  +k++ ++ +vG tG+GK+++++ ll ++
  KKY18897.1 1005 IKAGSNTAIVGRTGSGKSTLAMALLGTV 1032
                  7889999*************99977655 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       3.1   2.4e+03      53      87 ..     703     738 ..     696     743 .. 0.66
   2 ?    6.3   0.5     0.012       9.4      51      79 ..     787     815 ..     779     825 .. 0.80
   3 ?    3.2   0.1      0.11        84      29      52 ..    1142    1165 ..    1137    1185 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.1
      PRIMA1  53 plepwwselvii.iavvcaslvfllvlviicykaik 87 
                 +++pw  ++ +i ia + + l+    +++i y a k
  KKY18897.1 703 NINPWLLGFTLIaIAKAVTFLIASAFMLVIVYSAGK 738
                 567899986544145555555656678888888765 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.012
      PRIMA1  51 vsplepwwselviiiavvcaslvfllvlv 79 
                 ++ + +w s+l++i +v+ a lvf +++ 
  KKY18897.1 787 AAGAISWISGLIVIASVTPAFLVFSIIVT 815
                 445569******************87764 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.11
      PRIMA1   29 lpppppppppprllsltaaestvs 52  
                  lppp p pp+ +l+sl+ a +++ 
  KKY18897.1 1142 LPPPRPFPPTLKLISLSQATASID 1165
                  899999999999999888877655 PP

>> BSP_II  Bone sialoprotein II (BSP-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.8     0.042        32     154     208 ..     326     377 ..     317     404 .. 0.49
   2 ?    5.7   0.9     0.013        10      47      78 ..     598     629 ..     581     643 .. 0.57

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.042
      BSP_II 154 evdeneqgvngtstnsteaengngssggdngeeeeeesvteaeaegteveeeeea 208
                 ++ ene + n+t+ ++  a   n s+g +   ++e  s+t  + +g  ++++ ++
  KKY18897.1 326 DISENETSDNSTNRQAGSAGLLNNSNG-NRTTDDESRSIT--NDDGRIEADQADN 377
                 444555555555444444222222222.222333333333..3344443333333 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.013
      BSP_II  47 ssdsseEngdGdsseEeeeeeetsneeennee 78 
                 ++ sseE+++ + seE+++ +++  e+  +ee
  KKY18897.1 598 DGSSSEEDEEAQESEEQDKTDAAVPEKFIDEE 629
                 33445555555555555555544444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       874  (0.0487478); expected 358.6 (0.02)
Passed bias filter:                      595  (0.0331865); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 1.03u 0.34s 00:00:01.37 Elapsed: 00:00:00.54
# Mc/sec: 6776.37
//
Query:       KKY18898.1  [L=361]
Description: putative short chain dehydrogenase reductase family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-38  131.3   0.0    1.1e-37  129.9   0.0    1.7  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.3e-34  119.3   0.0    3.2e-34  118.1   0.0    1.6  1  adh_short        short chain dehydrogenase
    1.5e-07   31.5   0.6    4.7e-07   29.9   0.0    1.9  2  KR               KR domain
  ------ inclusion threshold ------
      0.052   13.6   0.1        0.1   12.7   0.1    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
      0.053   12.7   0.0      0.084   12.0   0.0    1.3  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
       0.11   12.7   0.0       0.45   10.8   0.0    2.1  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.9   0.0   3.5e-41   1.1e-37       1     232 [.      85     352 ..      85     353 .. 0.81

  Alignments for each domain:
  == domain 1  score: 129.9 bits;  conditional E-value: 3.5e-41
                   TTT.TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG........... CS
  adh_short_C2   1 Gaa.sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.v..lecDVtdeeqvealveevvekfgklDilvnnagiapk........... 82 
                   Ga  +g+G+ + +ala++Ga+ ++   +++a  ++ee ++ ++   v  ++ DVt++e++ +++e++++++  lD+++ n gi  +           
    KKY18898.1  85 GAGgRGLGAMMTRALAQNGANKIFIIGRRQA--ALEETVSTCPPGiVvpIQGDVTSKESLSSCAEQIASQVPYLDVVIANSGIIGPpskvpgksdpt 179
                   77789***************96666444443..5777777777664359***********************************9999999853333 PP

                   ...CSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC............CEEEEEEEGGGTSB.STTTTHHHHHHHHHHHHHHHHHHHHGGGT CS
  adh_short_C2  83 ...lkgpfletsreefdraldvnlyslfllakaalplmkeg............gsivnlssvgaerv.vpnynaygaaKaalealtrylAvelgpkg 163
                      ++ +  + + +ef+++++vn++++f ++ a+lpl+++              +iv+++s++a +   p   ay+a+Ka+ e+++++lA +l + +
    KKY18898.1 180 leeMRDHWWSHEVDEFNQTMNVNTTGVFFTVMAFLPLLQKAnelrptssfaarPQIVCVTSIAAFMRtAPASFAYSASKAGAEHMVKNLATKLTRFK 276
                   3222233333455899********************8887778999987776667*******99876266666************************ PP

                   EEEEEEEE--BHCTGGGGSTT.....HHHHH..HHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 164 iRvNavspgpikTlaasgikg.....fdell..eelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                   iR+N+++pgp   ++++g        ++ l+  e+  +++pl+r+g  e+++ a+l+L+s + s+ +G+t+v DgG
    KKY18898.1 277 IRCNCIAPGPFMSEMTEGQFTgklseTRGLQegEWPIQEIPLERAGGEEDIGGAILYLCSRAGSFLSGNTIVLDGG 352
                   ***************877533233223333311334699************************************9 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.1   0.0   1.1e-37   3.2e-34       3     190 ..      81     295 ..      79     299 .. 0.89

  Alignments for each domain:
  == domain 1  score: 118.1 bits;  conditional E-value: 1.1e-37
                 EEEEST.TSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S............ CS
   adh_short   3 vlvtGa.ssGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi............ 87 
                 v++tGa ++G+G  + ++la++Ga+ ++ ++r++++lee+++ +      +++iq+Dvt++e+++   e++++++  ldv+++N Gi            
  KKY18898.1  81 VVITGAgGRGLGAMMTRALAQNGANKIFiIGRRQAALEETVSTCPP--GIVVPIQGDVTSKESLSSCAEQIASQVPYLDVVIANSGIigppskvpgksd 177
                 899997358***************99888***************96..68*********************************************9777 PP

                 ....S--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH..........HCTTEEEEEEEEGGGTSB-.TTBHHHHHHHHHHHHHHHHHHHHHGGGT CS
   adh_short  88 ....tgsgpfselseeewervievNltgvflltravlpaml..........kqssGrIvnvsSvagkvpv.agvaaYsAsKaavagltrslakelaptg 171
                     + +    +++ +e++++++vN tgvf ++ a+lp +            + + +Iv v+S+a++++  +   aYsAsKa+ ++++++la  l + +
  KKY18898.1 178 ptleEMRDHWWSHEVDEFNQTMNVNTTGVFFTVMAFLPLLQkanelrptssFAARPQIVCVTSIAAFMRTaPASFAYSASKAGAEHMVKNLATKLTRFK 276
                 766544445555666779999******************998888877755566789*********887516778************************ PP

                 EEEEEEEESSBSSHHHHHH CS
   adh_short 172 irvnavaPGlvdTdmakel 190
                 ir+n++aPG++ ++m++ +
  KKY18898.1 277 IRCNCIAPGPFMSEMTEGQ 295
                 ***************9865 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.6e-10   4.7e-07       3      92 ..      81     166 ..      80     177 .. 0.83
   2 ?   -1.1   0.1       0.5   1.5e+03     131     158 ..     235     263 ..     226     276 .. 0.73

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.6e-10
                 EEEETTTS.HHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE----- CS
          KR   3 ylitGGlG.gLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvl 92 
                 ++itG+ G gLG  ++r la++ga+++ +++R++   ++ +++++     g  v  ++ Dv++k++++++ e+i ++ p +  vi   g++
  KKY18898.1  81 VVITGAGGrGLGAMMTRALAQNGANKIFIIGRRQ---AALEETVS-TCPPG-IVVPIQGDVTSKESLSSCAEQIASQVPYLDVVIANSGII 166
                 5899988768***********************3...23333333.33334.577899*****************999*999999988876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.5
                 EEEEEEHHHHH--.TT-HHHHHHHHHHHH CS
          KR 131 fvlfSSiagllgs.agqanYaaaNaflDa 158
                 +v+++Sia+++ + +   +Y+a  a  + 
  KKY18898.1 235 IVCVTSIAAFMRTaPASFAYSASKAGAEH 263
                 68999999977641567788877665555 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.3e-05       0.1       9      55 ..      75     123 ..      68     134 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.3e-05
                   ..TT-EEEEES-SH..HHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHH CS
  Shikimate_DH   9 slkekkvlliGaGe..maelvakhLlakgvkkvvvaNRtlerakelaee 55 
                   s+k+ +v++ GaG   ++  ++++L+++g++k+++++R ++  +e ++ 
    KKY18898.1  75 SVKGLNVVITGAGGrgLGAMMTRALAQNGANKIFIIGRRQAALEETVST 123
                   588999*******633678999****************99988776665 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.8e-05     0.084       1      77 [.      81     150 ..      81     156 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.8e-05
                      EEEETTTS.HHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T CS
  Polysacc_synt_2   1 vlvtGagG.siGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelk 77 
                      v++tGagG  +G  ++r ++++ ++ki+++ r   +l e  +++        +   +vp+ gdv+ ke+l+++ e++ 
       KKY18898.1  81 VVITGAGGrGLGAMMTRALAQNGANKIFIIGRRQAALEETVSTC-----PPGI---VVPIQGDVTSKESLSSCAEQIA 150
                      79******569*********************998888776665.....2345...6788899999999988888765 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.45       1      67 [.      81     146 ..      81     185 .. 0.86
   2 ?   -1.8   0.0       1.1   3.4e+03       9      30 ..     327     349 ..     326     352 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
                      EEEE--S..HHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHH CS
  Sacchrp_dh_NADP   1 vliiGaG..svGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaall 67 
                      v+i GaG  + G  +++ la+++    +i +++r ++ le+++++     + +i+ d+  +e+ L++  
       KKY18898.1  81 VVITGAGgrGLGAMMTRALAQNGAN--KIFIIGRRQAALEETVSTCPPGIVVPIQGDVTSKES-LSSCA 146
                      788899723478999********99..9***************99999999999999999999.87654 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
                      HHHHHHHHHHCTCCT-G.EEEEE CS
  Sacchrp_dh_NADP   9 vGqavaellarhfdvda.eitva 30 
                      +G a++ l++r +++ + + +v 
       KKY18898.1 327 IGGAILYLCSRAGSFLSgNTIVL 349
                      899*********99988766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 2215.46
//
Query:       KKY18899.1  [L=331]
Description: putative short chain dehydrogenase reductase family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-45  153.7   0.3    2.5e-28   99.2   0.0    2.3  2  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
      1e-33  116.5   2.0    2.8e-32  111.8   2.0    2.1  1  adh_short     short chain dehydrogenase
    1.1e-11   45.0   0.2    2.2e-11   44.0   0.2    1.5  1  KR            KR domain
  ------ inclusion threshold ------
      0.056   12.9   0.3       0.17   11.3   0.3    1.9  1  Epimerase     NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.1   1.1e-17   5.1e-14       5     118 ..      63     186 ..      59     191 .. 0.91
   2 !   99.2   0.0   5.6e-32   2.5e-28     118     232 ..     211     327 ..     204     329 .. 0.93

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 1.1e-17
                   SHHHHHHHHHHHTT-E.EEEEESSGGH..HHHHHHHHHHTTSE..E.EE--TTSHHHHHHHHHHHHHHH......SSEEEEEE-----EGCSS-GGG CS
  adh_short_C2   5 gIGraiAkalaeeGae.vvltdlneea..kkrveelaeelgae..v.lecDVtdeeqvealveevvekf......gklDilvnnagiapklkgpfle 89 
                    ++ ++A+al e+G + ++l dl+  +  ++++++l+++++    v  +c+Vt+ e+ +++++++ + f       ++D l+  ag++     ++ e
    KKY18899.1  63 TLALHTARALLEHGLSgLALLDLDPLGqsRQQIKQLVKDFPDVkiVtGNCNVTSSESTQQAMAQASKYFaeegvgTQIDALLTFAGVVGC--VHASE 157
                   6899**********988*******9887789*********95545489*******************9988877779*************..9999* PP

                   H-HHHHHHHHHHHTHHHHHHHHHHHHHCT CS
  adh_short_C2  90 tsreefdraldvnlyslfllakaalplmk 118
                   ++++e++r++dvnl+++fl a+a+lp+m+
    KKY18899.1 158 MEEKEWRRVMDVNLTGAFLAAQAVLPYMA 186
                   **************************997 PP

  == domain 2  score: 99.2 bits;  conditional E-value: 5.6e-32
                   TSCCEEEEEEEGGGTSB.STTTT.HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHH CS
  adh_short_C2 118 keggsivnlssvgaerv.vpnyn.aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleelearaplgrlgtpeevaeaal 212
                    +gg+i  ++s+++++v  p+ + ay+++Ka++++l+r+lA+e+++ g+RvN++spg+++T +++g  g ++ ++ + +r pl r+g+pee a +++
    KKY18899.1 211 GRGGAITFIASMSGHIVnYPQPQsAYNVSKAGIVHLARCLAAEWAHAGVRVNSISPGYMDTILNEGE-GLERARKMWSERCPLARMGDPEELAGVCV 306
                   578*********999997888889*************************************999887.5999************************* PP

                   HHCSGGGT.T--SEEEEESTT CS
  adh_short_C2 213 fLasdeas.yitGqtlvvDgG 232
                    L s +a  yitG+++ vDgG
    KKY18899.1 307 LLSSRRAGgYITGSDFGVDGG 327
                   ****988648*********** PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   2.0   6.2e-36   2.8e-32       3     189 ..      55     276 ..      53     282 .. 0.88

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 6.2e-36
                 EEEESTTSHHHHHHHHHHHHTT-EEEE.EESC..HHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHH......SSESEEEE---SS--S CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvv.vdrs..eekleevakelkee.gakalaiqvDvtdreevealvekavkkl......gkldvLvnNAGitgsg 91 
                 +++tG+++ + + +a++l++ G + ++ +d     +  +++++ +k+    k+++ +++vt++e++++++++a k +       ++d+L + AG+ g +
  KKY18899.1  55 AVITGGAGTLALHTARALLEHGLSGLAlLDLDplGQSRQQIKQLVKDFpDVKIVTGNCNVTSSESTQQAMAQASKYFaeegvgTQIDALLTFAGVVGCV 153
                 89*********************98884443310334444444444448899*********************999999988889************** PP

                 SGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH.......................HCTTEEEEEEEEGGG..TSB-TTBHHHHHHHHHHHHHHHHHHH CS
   adh_short  92 pfselseeewervievNltgvflltravlpaml.......................kqssGrIvnvsSvag..kvpvagvaaYsAsKaavagltrslak 165
                  +se++e+ew+rv++vNltg+fl+++avlp+m                         +++G+I +++S+ g   +    ++aY  sKa++++l+r+la 
  KKY18899.1 154 HASEMEEKEWRRVMDVNLTGAFLAAQAVLPYMAgapakndanseeglnnfdtsqtsVGRGGAITFIASMSGhiVNYPQPQSAYNVSKAGIVHLARCLAA 252
                 **************************************************9998888899***********6334445589****************** PP

                 HHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short 166 elaptgirvnavaPGlvdTdmake 189
                 e+a  g+rvn++ PG++dT +++ 
  KKY18899.1 253 EWAHAGVRVNSISPGYMDTILNEG 276
                 *******************88865 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.2   4.9e-15   2.2e-11       3     118 ..      55     176 ..      53     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 4.9e-15
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT..T-EEEE----TT-HHHHHHHHHHHHHHS......S---EEEE------ CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal..gaevevvaaDvsdkdavealleeikaee......ppikGvihaAgvlr 93 
                  +itGG+G L+l++ar l+e+g + l+ll  +  +  +s+++i++l +   ++++ + ++ v+++++ +++++++++ +       +i   +  Agv+ 
  KKY18899.1  55 AVITGGAGTLALHTARALLEHGLSGLALLDLD--PLGQSRQQIKQLVKDfpDVKIVTGNCNVTSSESTQQAMAQASKYFaeegvgTQIDALLTFAGVVG 151
                 69****************************99..77788889999988767999999*********999999998875544447789************ PP

                 ---TTT--HHHHHHHHTTTTHHHHH CS
          KR  94 dklleemtaedleqvlapKvkGawn 118
                     +em+++++++v+   ++Ga  
  KKY18899.1 152 CVHASEMEEKEWRRVMDVNLTGAFL 176
                 *****************99999865 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   3.7e-05      0.17       2      86 ..      56     162 ..      55     266 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.7e-05
                 EEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC................EEEE--TT-HH..HHHHHHHHH....T-SEEEE--S.--- CS
   Epimerase   2 lVtGatGfiGsalvkallekgye.vigldrlssasntarledl................elveldltdrs..alerlfkee....qpdavihlAa.vgg 76 
                 ++tG++G +  ++++alle+g   +  ld ++ ++ ++++++l                +    + t+++  +  ++f+ee    q+da + +A+ vg+
  KKY18899.1  56 VITGGAGTLALHTARALLEHGLSgLALLDLDPLGQSRQQIKQLvkdfpdvkivtgncnvT--SSESTQQAmaQASKYFAEEgvgtQIDALLTFAGvVGC 152
                 79*******************7768888888888888888888999****9966666331..2222222233344444443222378888888888888 PP

                 HHHHHHSHHH CS
   Epimerase  77 vaassedpad 86 
                 v+as  + ++
  KKY18899.1 153 VHASEMEEKE 162
                 8887655543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 2144.02
//
Query:       KKY18900.1  [L=350]
Description: putative 2og-fe oxygenase family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-28   98.1   0.0    8.7e-28   97.4   0.0    1.3  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    1.6e-20   73.5   0.0    3.6e-20   72.3   0.0    1.6  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4   0.0   9.7e-32   8.7e-28       1     117 [.      27     151 ..      27     152 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.4 bits;  conditional E-value: 9.7e-32
      DIOX_N   1 iPvidlspl..sddedraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKekl..akspsfrGysrlgeektdg........... 84 
                 iPvid+s +  +++ +++++ae++ +A+++ Gf+y+ nhg+p++ ++ +f ++++FF+ Pee+K++l   +++s+rGy ++g+ek+ +           
  KKY18900.1  27 IPVIDFSTFlhGNEVSKRSTAEAVLRAFQTSGFLYLANHGIPPSTVRTVFGQSAKFFERPEEQKNALgwDRPESNRGYVTFGREKVTQsadpeeiarlr 125
                 9*******997777889**************************************************999999*************999********** PP

      DIOX_N  85 .kkldwkesfdlgtelpeddpagkplegpnqwPe 117
                  +++d+ke++++g+e  e+         pnqwPe
  KKY18900.1 126 aTNPDYKETMEIGREGVEG--------MPNQWPE 151
                 ***************6555........79****8 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0     4e-24   3.6e-20       3     101 .]     202     312 ..     200     312 .. 0.88

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 4e-24
                   -EEEEEEE-S-.....--------EEEEEESSSEEEEEEE-TT---EEEETE.EEE----TTEEEEEE-HHHHHHTTS-S----EEE-.---GTGS. CS
  2OG-FeII_Oxy   3 ellvlnyypph.....pdpevilglgahtdaslltillqddvgglevfkdgk.wlrvppvdnslivniGdallflsngryksvlHrVl.pvneger. 91 
                   + l+l +ypp      + + +  + gah+d++ +t+l+qdd+gglev   ++ w+r +p ++++++n+Gd l  +sn   ks+ HrV  p  e+++ 
    KKY18900.1 202 NTLRLLHYPPVlksvfKNNPNAVRAGAHSDYGSITLLFQDDIGGLEVKSPKNtWVRATPIKDTIVINAGDLLARWSNDTIKSTNHRVVqPPYESDSd 298
                   5677778899998887333348899**********************544557***********************************888887779 PP

                   ....EEEEEEEE-- CS
  2OG-FeII_Oxy  92 ....Rvsiayfiep 101
                       R+siayf++p
    KKY18900.1 299 myptRYSIAYFCNP 312
                   ************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2312.60
//
Query:       KKY18901.1  [L=380]
Description: putative 2-amino-3-carboxymuconate-6-semialdehyde [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-20   71.8   0.0      4e-19   69.5   0.0    2.1  1  Amidohydro_2  Amidohydrolase


Domain annotation for each model (and alignments):
>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0   2.2e-23     4e-19       1     291 []       8     378 ..       8     378 .. 0.78

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 2.2e-23
                   EEEEEEE..SHHH..............................................CCCCCCGGCTSCCCHHHHHCHHTSSECCCEHCHHHHHH CS
  Amidohydro_2   1 iDvHaHllppeaa..............................................irddgepngfdpeerlafmkragvdpqlaspeallvln 51 
                   +DvH+H++p ++                                                 +++  ++f    +++++    ++p l+++e+     
    KKY18901.1   8 VDVHTHVYPSSYIallrsrktvpyvydppsgadprliilatdddpsrpqelrgrpldaaYSSWDAKRSFMKLHGINVSVVSLANPWLDFLEDP---E 101
                   799999999999999999999999999999999999999888888888888776666655555555555555555555555555554444444...4 PP

                   HHTSHHCH..HHHHHHHHHHHHHHHHHHHHHCTTCBECEEEC.TSSHCHHHHHHHHHHHHTTECEEEEESSTTTCCTTTCGGHHHHHHHHHHHT-EE CS
  Amidohydro_2  52 aaagiara..vivaalcrgannrvlaeaakrpdrfvggaavv.pldpedaaaeleraveelgfkGvrlnphvggddllgdrldrpifealeelglpv 145
                   +aag+ar   ++++++cr+ n+r   e       + ++aa++   + e++ ae+ r+ +   +kG+ +++   g+ l++++l+ pi+ al++ + +v
    KKY18901.1 102 EAAGWARRvnDDLEEVCRESNARNHGEGVCK---LYAFAALPlKASSEAVEAEIGRCKGLNYIKGIIMGTTGLGKGLDDPALE-PIWNALQKNKMTV 194
                   4446666655778888888888654444443...33444445144589999********************************.************* PP

                   EEE........................CHHHCHHHHHHHHHHHHHHHCCHHHHCTTSEEEESGGGTTTTCHHHHHHHHHHHHHCCEEECCGHHH... CS
  Amidohydro_2 146 dihtGps....................pewlfggpqettraiqplllsgvarkfPnlkivlaHgGgpserlraalellarrpnvyvklsglyte... 219
                   ++h  p                      +  +g+p ett+a+ ++ l+gv++++ +l + laH Gg+++ l+  ++ + ++++ +   +g+ ++   
    KKY18901.1 195 FLH--PHyglpdeafggkeivaqsghvLPLALGFPLETTIAVARMFLAGVFDRYGSLEMLLAHSGGTLPFLAGRIQSCVDHEREFKQNGGHKQGpvk 289
                   ***..44556666666667777668889999************************************888888888888888888777776666988 PP

                   ........SSEEECCHHCHHHHHHHH.HHH-GGGEEEE--BTSTTSTSCTTHHHHCHHHHH..........SSHHHHHHHHTHHHHHHCTB CS
  Amidohydro_2 220 ........llyfdspladppalarli.eavgpdrilfGsDyPhptleaepealalldlval..........lsdeerekilggNAarlygl 291
                           + y d++ +    l+++i +    dr+lfG+D P+ ++ ++ ++ +      +             ee ++ilg NA +++++
    KKY18901.1 290 giwdvlktNIYLDAVIYGDIGLKAAIgASKSTDRVLFGTDHPFFPPLHSADEKWPSVT--TnyaainagvgDGSEEAKDILGRNALKILDI 378
                   88886666555566655555577776256778**************999999995543..3347899*********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 2402.39
//
Query:       KKY18902.1  [L=418]
Description: putative cell cycle control protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-20   72.3   0.2    7.2e-20   70.9   0.2    1.8  1  DnaJ      DnaJ domain
  ------ inclusion threshold ------
      0.061   13.1   0.2       0.16   11.8   0.2    1.7  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.2     8e-24   7.2e-20       1      63 []      16      78 ..      16      78 .. 0.99

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 8e-24
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                d+Ye+L ++++as++eI++aYrk +lkyHPDk   +pe+ ekF+ ++ A +vLsdp  R  YD
  KKY18902.1 16 DFYELLSIESTASDSEIRRAYRKTSLKYHPDKVGASPENLEKFHLLQIANDVLSDPAIRTLYD 78
                79*******************************9999*************************9 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   1.8e-05      0.16       5      58 ..     212     273 ..     211     278 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.8e-05
                 SETTTSSHHHHHHHHHTTSCEEEEEEEEE...TTTSEEE.....EEEEEESSHHHHHHHHHH CS
       RRM_1   5 nLppdvteeeLkelFskfGpiksiklvrd...etgkskg.....fafVeFeskedAekAlea 58 
                 +++ ++++e L ++F+ fG + ++ l +d   +tg +k      ++++ F+s   A +A+  
  KKY18902.1 212 GIADTIDKEILLAMFKTFGVVDNAFLLKDkkqRTGENKEkkliaTGIIVFKSIVGAHAAVTD 273
                 66778999*********************999777666433333788999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1936  (0.107981); expected 358.6 (0.02)
Passed bias filter:                      678  (0.0378158); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.48
# Mc/sec: 2599.88
//
Query:       KKY18903.1  [L=596]
Description: putative vacuolar protein 8 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-73  239.5  28.1    9.1e-13   47.8   0.1   11.3 12  Arm              Armadillo/beta-catenin-like repeat
    1.2e-17   64.0  15.3    5.1e-07   30.1   0.2    7.2  6  HEAT_EZ          HEAT-like repeat
    1.1e-16   59.5  13.7      0.071   13.4   0.0    9.0  9  HEAT             HEAT repeat
    2.2e-16   60.0  10.2     0.0022   18.3   0.0    7.5  8  HEAT_2           HEAT repeats
    9.1e-11   41.7   6.4    1.6e-06   27.8   2.0    2.6  2  Arm_2            Armadillo-like
      1e-10   40.8   7.4    4.4e-06   25.5   0.3    2.7  3  Adaptin_N        Adaptin N terminal region
    3.7e-09   36.3   0.5    0.00043   19.7   0.8    3.2  3  V-ATPase_H_N     V-ATPase subunit H
    1.3e-08   33.5   0.7    2.1e-08   32.8   0.7    1.3  1  KAP              Kinesin-associated protein (KAP)
    0.00013   22.3   5.9        1.3    9.9   0.2    6.9  7  HEAT_PBS         PBS lyase HEAT-like repeat
    0.00024   21.2   5.4      0.025   14.6   0.4    4.6  5  Cnd1             non-SMC mitotic condensation complex subunit
    0.00029   20.8   6.8        1.5    8.7   0.1    4.1  4  DUF3361          Domain of unknown function (DUF3361)
     0.0084   16.1   6.1        4.3    7.4   0.1    5.0  5  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
     0.0086   16.2   4.3        9.4    6.4   0.3    4.7  8  V-ATPase_H_C     V-ATPase subunit H
  ------ inclusion threshold ------
      0.073   12.2   7.8        8.6    5.4   0.1    4.7  5  IFRD             Interferon-related developmental regulator (
      0.078   13.6   0.1          1   10.0   0.1    2.7  3  Vac14_Fab1_bd    Vacuolar 14 Fab1-binding region
      0.092   11.6   0.0       0.26   10.1   0.0    1.6  2  YqfD             Putative stage IV sporulation protein YqfD


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.025        28      14      40 ..      70      96 ..      69      97 .. 0.88
   2 !   20.5   0.1   3.2e-07   0.00036      14      40 ..     126     152 ..     124     153 .. 0.93
   3 !   34.1   0.2   1.7e-11   1.9e-08       1      40 [.     154     193 ..     154     194 .. 0.93
   4 !   31.6   0.0     1e-10   1.1e-07       2      40 ..     196     234 ..     195     235 .. 0.95
   5 !   47.8   0.1   8.1e-16   9.1e-13       1      40 [.     236     275 ..     236     276 .. 0.97
   6 !   22.3   0.1   8.6e-08   9.6e-05      10      41 .]     288     319 ..     280     319 .. 0.87
   7 !   19.2   0.0     8e-07    0.0009       5      40 ..     324     359 ..     320     360 .. 0.92
   8 !   32.0   0.0   7.3e-11   8.2e-08       6      41 .]     366     402 ..     361     402 .. 0.93
   9 !   12.6   0.5   9.4e-05      0.11       1      40 [.     404     443 ..     404     444 .. 0.94
  10 !   24.4   0.0   1.9e-08   2.1e-05       1      41 []     445     485 ..     445     485 .. 0.95
  11 ?    0.6   0.0      0.57   6.4e+02      19      35 ..     510     526 ..     508     532 .. 0.90
  12 ?   -2.6   0.0       5.8   6.5e+03      18      28 ..     528     538 ..     523     539 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.025
                HHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm 14 vppLvrLLssedeevqeeAawALsNLa 40
                +++L +L +s+++++q+ Aa + + ++
  KKY18903.1 70 LRALSTLVYSDNVDLQRSAALTFAEIT 96
                57999***************9887775 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 3.2e-07
                 HHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  14 vppLvrLLssedeevqeeAawALsNLa 40 
                 ++p + LL+s d evq++A +AL+NLa
  KKY18903.1 126 LEPILFLLQSSDIEVQRAASAALGNLA 152
                 678899********************8 PP

  == domain 3  score: 34.1 bits;  conditional E-value: 1.7e-11
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 n enk  ++ +G++ppL+r + s+++evq++A+++++NLa
  KKY18903.1 154 NTENKVSIVLLGGLPPLIRQMMSPNVEVQCNAVGCITNLA 193
                 57888889999****************************9 PP

  == domain 4  score: 31.6 bits;  conditional E-value: 1e-10
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 +enk  + ++Ga+ pL rL +s+d +vq++A++AL N++
  KKY18903.1 196 EENKAKIARSGALGPLTRLAKSKDMRVQRNATGALLNMT 234
                 69***********************************97 PP

  == domain 5  score: 47.8 bits;  conditional E-value: 8.1e-16
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 +++n++++++aGa+p+Lv+LLss+d +vq  +++ALsN+a
  KKY18903.1 236 SDDNRQQLVNAGAIPVLVQLLSSQDMDVQYYCTTALSNIA 275
                 689************************************8 PP

  == domain 6  score: 22.3 bits;  conditional E-value: 8.6e-08
                 HTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm  10 eaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 e+  v  Lv+L++s+ ++vq++Aa AL+NLa+
  KKY18903.1 288 ESKLVTSLVQLMDSGTPKVQCQAALALRNLAS 319
                 6677888***********************96 PP

  == domain 7  score: 19.2 bits;  conditional E-value: 8e-07
                 HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   5 kdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                   ++++  ++ppL+rLL+s    +   A+++++N++
  KKY18903.1 324 QLEIVRNRGLPPLLRLLQSSYIPLILSAVACIRNIS 359
                 678999*****************************8 PP

  == domain 8  score: 32.0 bits;  conditional E-value: 7.3e-11
                 HHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm   6 davieaGavppLvrLLs.sedeevqeeAawALsNLaa 41 
                   +i+aG ++pLv+LL  +++ee+q+ A ++L+NLaa
  KKY18903.1 366 SPIIDAGFLKPLVDLLGsTGNEEIQCHAISTLRNLAA 402
                 679********************************96 PP

  == domain 9  score: 12.6 bits;  conditional E-value: 9.4e-05
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 +++nk++v eaGav+   +L      +vq e ++A++ La
  KKY18903.1 404 SDRNKQLVLEAGAVQKCKELVLQVPLSVQSEMTAAIAVLA 443
                 689********************************98776 PP

  == domain 10  score: 24.4 bits;  conditional E-value: 1.9e-08
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 ++e k ++ ++G+ + L+ L +se+ evq ++a+AL+NL++
  KKY18903.1 445 SDELKTHLLNLGIFECLIPLTDSESIEVQGNSAAALGNLSS 485
                 5789999********************************96 PP

  == domain 11  score: 0.6 bits;  conditional E-value: 0.57
                 HHTTTSSHHHHHHHHHH CS
         Arm  19 rLLssedeevqeeAawA 35 
                 r+L s+d++ q+ A w+
  KKY18903.1 510 RFLASGDPTFQHIAIWT 526
                 7899************8 PP

  == domain 12  score: -2.6 bits;  conditional E-value: 5.8
                 HHHTTTSSHHH CS
         Arm  18 vrLLssedeev 28 
                 v+LL+s d+++
  KKY18903.1 528 VQLLESNDQKL 538
                 899**999875 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.2   4.6e-10   5.1e-07       2      55 .]     139     192 ..     138     192 .. 0.98
   2 ?    2.6   0.0      0.18     2e+02      28      52 ..     206     230 ..     193     233 .. 0.86
   3 !    9.7   0.0    0.0011       1.2       2      55 .]     221     274 ..     220     274 .. 0.79
   4 !   14.0   0.2   4.9e-05     0.055      18      55 .]     280     317 ..     275     317 .. 0.90
   5 ?    1.4   0.0      0.44   4.9e+02      30      55 .]     374     400 ..     349     400 .. 0.71
   6 !   12.3   0.1   0.00016      0.18      29      55 .]     457     483 ..     436     483 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 4.6e-10
     HEAT_EZ   2 rvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 +v+raA +aLG+la++  + ++ ++   lp+L++ +++++ eV+++A+g+++nl
  KKY18903.1 139 EVQRAASAALGNLAVNTENKVSIVLLGGLPPLIRQMMSPNVEVQCNAVGCITNL 192
                 69*************************************************997 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.18
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaAagaL 52 
                  +l +L +l ++++ +V+ +A gaL
  KKY18903.1 206 GALGPLTRLAKSKDMRVQRNATGAL 230
                 578899999999999*******998 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.0011
     HEAT_EZ   2 rvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 rv+r+A  aL ++    ++ +q++   ++p L++lL++ + +V++++  aL+n+
  KKY18903.1 221 RVQRNATGALLNMTHSDDNRQQLVNAGAIPVLVQLLSSQDMDVQYYCTTALSNI 274
                 5677777766556677777788888899999**99977666***********97 PP

  == domain 4  score: 14.0 bits;  conditional E-value: 4.9e-05
     HEAT_EZ  18 epellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 ++  l++  ++++  L++l+ +  ++V+++Aa aL+nl
  KKY18903.1 280 NRKKLAQTESKLVTSLVQLMDSGTPKVQCQAALALRNL 317
                 67788889999*************************97 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.44
     HEAT_EZ  30 lpaLlalL.nddsdeVRaaAagaLgnl 55 
                 l++L+ lL ++ + e+++ A+ +L+nl
  KKY18903.1 374 LKPLVDLLgSTGNEEIQCHAISTLRNL 400
                 5566666635566799*****999997 PP

  == domain 6  score: 12.3 bits;  conditional E-value: 0.00016
     HEAT_EZ  29 ilpaLlalLnddsdeVRaaAagaLgnl 55 
                 i  +L++l  ++s eV++++a aLgnl
  KKY18903.1 457 IFECLIPLTDSESIEVQGNSAAALGNL 483
                 789**********************97 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.2   1.4e+03       8      21 ..      76      90 ..      70      97 .. 0.62
   2 !   11.1   0.1   0.00035      0.39       3      28 ..     127     152 ..     126     154 .. 0.90
   3 !   13.4   0.0   6.4e-05     0.071       2      29 ..     167     194 ..     167     195 .. 0.93
   4 ?    3.0   0.0      0.14   1.5e+02       4      27 ..     210     233 ..     207     235 .. 0.84
   5 !   11.7   0.0   0.00022      0.25       2      28 ..     249     275 ..     248     276 .. 0.96
   6 !    9.3   0.1    0.0013       1.5       2      29 ..     292     319 ..     291     320 .. 0.90
   7 ?    2.8   0.1      0.16   1.8e+02       2      28 ..     333     359 ..     333     361 .. 0.91
   8 ?   -1.4   0.0       3.7   4.2e+03       2      28 ..     374     401 ..     373     403 .. 0.76
   9 !    7.5   0.0     0.005       5.6       1      30 [.     457     486 ..     457     487 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.2
                HH.T-SSHHHHHHHH CS
        HEAT  8 ll.sDpspeVReaAa 21
                l  sD+   +R+aA+
  KKY18903.1 76 LVySDNVDLQRSAAL 90
                553666667777765 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00035
                 HHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgala 28 
                  ++l ll++++ eV +aA  aLg+la
  KKY18903.1 127 EPILFLLQSSDIEVQRAASAALGNLA 152
                 5678899*****************98 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 6.4e-05
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                 lP+l++ +++p+ eV ++A+ ++++la 
  KKY18903.1 167 LPPLIRQMMSPNVEVQCNAVGCITNLAT 194
                 79999999******************96 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.14
                 HHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgal 27 
                 +l +l ++++++V ++A  aL ++
  KKY18903.1 210 PLTRLAKSKDMRVQRNATGALLNM 233
                 678888***********9999765 PP

  == domain 5  score: 11.7 bits;  conditional E-value: 0.00022
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 +P+l++lls+++++V + +  aL ++a
  KKY18903.1 249 IPVLVQLLSSQDMDVQYYCTTALSNIA 275
                 8***********************997 PP

  == domain 6  score: 9.3 bits;  conditional E-value: 0.0013
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                 +  l++l+ +  p+V + Aa+aL +la+
  KKY18903.1 292 VTSLVQLMDSGTPKVQCQAALALRNLAS 319
                 5679999999****************97 PP

  == domain 7  score: 2.8 bits;  conditional E-value: 0.16
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 lP+ll+ll+++      +A+ ++ +++
  KKY18903.1 333 LPPLLRLLQSSYIPLILSAVACIRNIS 359
                 89**********999999999999885 PP

  == domain 8  score: -1.4 bits;  conditional E-value: 3.7
                 HHHHHHHHT-.SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsD.pspeVReaAakaLgala 28 
                 l +l+ ll +  + e+ + A+ +L +la
  KKY18903.1 374 LKPLVDLLGStGNEEIQCHAISTLRNLA 401
                 5567777744488999999999999998 PP

  == domain 9  score: 7.5 bits;  conditional E-value: 0.005
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 ++ +l+ l  ++s eV  ++a aLg+l+++
  KKY18903.1 457 IFECLIPLTDSESIEVQGNSAAALGNLSSK 486
                 56789998888****************986 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.4   1.5e+03      31      56 ..      68      93 ..      30     100 .. 0.61
   2 !    8.4   0.1    0.0024       2.7      30      60 ..     123     153 ..     116     165 .. 0.78
   3 !   18.3   0.0     2e-06    0.0022       1      63 [.     167     239 ..     167     246 .. 0.82
   4 !   11.0   0.0   0.00037      0.42      29      63 ..     245     279 ..     239     290 .. 0.83
   5 !    9.3   0.4    0.0013       1.5       3      40 ..     294     340 ..     278     353 .. 0.51
   6 ?    6.2   0.0     0.012        14       2      60 ..     334     402 ..     333     419 .. 0.67
   7 !    6.9   0.0    0.0073       8.2      21      60 ..     439     485 ..     431     502 .. 0.75
   8 ?   -2.1   0.0       4.6   5.1e+03      37      58 ..     509     530 ..     506     554 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.4
      HEAT_2 31 ealpaLvellededpavRraaaeaLg 56
                e l+aL  l+ +++ + +r aa + +
  KKY18903.1 68 EPLRALSTLVYSDNVDLQRSAALTFA 93
                55666666666666666666665555 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0024
      HEAT_2  30 pealpaLvellededpavRraaaeaLgaigd 60 
                 +++l+ ++ ll+++d +v+raa  aLg ++ 
  KKY18903.1 123 RDTLEPILFLLQSSDIEVQRAASAALGNLAV 153
                 57788888899****************8763 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 2e-06
      HEAT_2   1 ldaLlqalendpdpevrraairaLg..........rignpealpaLvellededpavRraaaeaLgaigd.pea 63 
                 l++L+ ++  +p+ ev+ +a+ ++           +i+   al  L++l++++d++v+r+a  aL  + + +++
  KKY18903.1 167 LPPLIRQM-MSPNVEVQCNAVGCITnlatheenkaKIARSGALGPLTRLAKSKDMRVQRNATGALLNMTHsDDN 239
                 68999999.89**************77677666666666699*********************99877541444 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00037
      HEAT_2  29 npealpaLvellededpavRraaaeaLgaigdpea 63 
                 n  a+p Lv+ll+++d++v++   +aL+ i+ ++a
  KKY18903.1 245 NAGAIPVLVQLLSSQDMDVQYYCTTALSNIAVDAA 279
                 6789************************9985443 PP

  == domain 5  score: 9.3 bits;  conditional E-value: 0.0013
      HEAT_2   3 aLlqalendpdpevrraairaLgrignp..........ealpaLvell 40 
                  L+q++ ++  p+v+ +a+ aL +++++          + lp L++ll
  KKY18903.1 294 SLVQLM-DSGTPKVQCQAALALRNLASDekyqleivrnRGLPPLLRLL 340
                 344444.44555555555555554443333333333334444444444 PP

  == domain 6  score: 6.2 bits;  conditional E-value: 0.012
      HEAT_2   2 daLlqalendpdpevrraairaLgrig.np.......ea..lpaLvell.ededpavRraaaeaLgaigd 60 
                 ++Ll +l +++   +   a+ ++ +i  +p       +a  l+ Lv+ll ++ +++++ +a+ +L  ++ 
  KKY18903.1 334 PPLLRLL-QSSYIPLILSAVACIRNISiHPlnespiiDAgfLKPLVDLLgSTGNEEIQCHAISTLRNLAA 402
                 6777777.56666667777777774421223444455224599******8889***********998864 PP

  == domain 7  score: 6.9 bits;  conditional E-value: 0.0073
      HEAT_2  21 iraLg.......rignpealpaLvellededpavRraaaeaLgaigd 60 
                 i +L+        + n  ++++L++l ++e+ +v+ + a aLg + +
  KKY18903.1 439 IAVLAlsdelktHLLNLGIFECLIPLTDSESIEVQGNSAAALGNLSS 485
                 4444422544334445588************************8754 PP

  == domain 8  score: -2.1 bits;  conditional E-value: 4.6
      HEAT_2  37 vellededpavRraaaeaLgai 58 
                  ++l + dp  ++ a+++++++
  KKY18903.1 509 KRFLASGDPTFQHIAIWTAVQL 530
                 5566666666666666666654 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   2.0   1.4e-09   1.6e-06      12     189 ..     124     304 ..     114     316 .. 0.82
   2 !   15.2   0.1   9.9e-06     0.011      11     108 ..     330     430 ..     319     486 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.4e-09
       Arm_2  12 kelekllalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkkikvyvnqvckdivssplNse 110
                   le +l lL+s +d  +q++a  +lgn a+ + n+  i  lgg++ +   + ++n ev+ +a+  + nl++ +en+ ki           ++ +    
  KKY18903.1 124 DTLEPILFLLQS-SDIEVQRAASAALGNLAVNTENKVSIVLLGGLPPLIRQMMSPNVEVQCNAVGCITNLATHEENKAKIARSGALGPLTRLAKSKDMR 221
                 567778888875.58899***************************8666666679***********************998765544444455556779 PP

       Arm_2 111 vQlagLklltnlsvtneyqhllvs..yisellsLLskGnekikvqvLkvllnlseNpamtrellsakv..lssllslfnkkea 189
                 vQ  +   l n++  ++ +  lv+   i+ l++LLs+ +  ++ +    l+n++   a+ ++l +++     sl+ l ++ + 
  KKY18903.1 222 VQRNATGALLNMTHSDDNRQQLVNagAIPVLVQLLSSQDMDVQYYCTTALSNIAVDAANRKKLAQTESklVTSLVQLMDSGTP 304
                 *************98776544443238************************************98765116899999888665 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 9.9e-06
       Arm_2  11 pkelekllalLkssedpliqeialltlgnsaaysvnqdiirdlggi.tiianllsksnaevkekalnalnnlsenvenqkki..kvyvnqvckd.ivss 105
                  + l  ll lL+ss  pli  ++  +  n   +++n+  i d g + ++++ l s+ n+e++ +a+++l nl+ +++++k++  ++   q ck+ ++  
  KKY18903.1 330 NRGLPPLLRLLQSSYIPLILSAVACI-RNISIHPLNESPIIDAGFLkPLVDLLGSTGNEEIQCHAISTLRNLAASSDRNKQLvlEAGAVQKCKElVLQV 427
                 5667889************9988765.67779************9846777777999***************999988887522555555565514445 PP

       Arm_2 106 plN 108
                 pl 
  KKY18903.1 428 PLS 430
                 553 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       0.5   5.6e+02     450     513 ..      27      88 ..      16     104 .. 0.65
   2 !   25.5   0.3   3.9e-09   4.4e-06     146     295 ..     118     275 ..      67     290 .. 0.75
   3 !   18.1   1.4   7.2e-07   0.00081     114     281 ..     290     470 ..     280     487 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.5
                 ...HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THXHHHHHHHHHHHXXSHHHHHHH CS
   Adaptin_N 450 e.sasdllrslaekfvlesekvklqiltalvKlyltspdketqekliqlvlslatssdlevrdRa 513
                 +  ++dll++l +++ +++    +   t+l++l ++ +++  + + +  + +l +s++++++  a
  KKY18903.1  27 ReAVADLLQYLENVPQQTQPSRSS---TKLTRLLQRAETDFFTGEPLRALSTLVYSDNVDLQRSA 88 
                 446777777777777777774444...44444444444445556777778888887788887655 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 3.9e-09
                 HHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH..HCCCCCCCHHHHHHHCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH....HHHHHHHCGGC CS
   Adaptin_N 146 pdllrkqlveeikellsdkdpgvvlaAvalleei..kkndrlllkllpklvrrLcnllteldpwlqvkiiklltrlarqepeersk..kellesllnll 240
                    + ++ +e i  ll+++d+ v++aA a+l  +  + +++  + ll  l   ++++  +++   q+  + ++t+la +e+ +++   +  l  l+ l 
  KKY18903.1 118 VREVDRDTLEPILFLLQSSDIEVQRAASAALGNLavNTENKVSIVLLGGLPPLIRQM-MSPNVEVQCNAVGCITNLATHEENKAKIarSGALGPLTRLA 215
                 3334333599999*********************76444444446665555555555.589999**************9999995488999******** PP

                 GCSSCHHHHHHHHHCCHCCCCST.....HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHH CS
   Adaptin_N 241 qssnnaVlletvnlivelapkne.....livlavnaLvrllsskdenlryvaLrtllkiv 295
                 +s+ + V  ++  ++ ++  +++     ++  a+ +Lv+llss+d  ++y   ++l+ i+
  KKY18903.1 216 KSKDMRVQRNATGALLNMTHSDDnrqqlVNAGAIPVLVQLLSSQDMDVQYYCTTALSNIA 275
                 ********9999999966655554456666668899**************9998888876 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 7.2e-07
                 HHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCC..CC.HHHHHHHCTT-SSHHHHHHHHHHHHHH...HCCCCCCC..HHHHHHHCCHHHHHHCS CS
   Adaptin_N 114 dlapaikkllkdrspyvrkkAalailklykkdpdllr..kq.lveeikellsdkdpgvvlaAvalleei...kkndrlll..kllpklvrrLcnlltel 204
                 +l++ + +l+ + +p v+ +Aala+  l + ++ +l+  ++  ++ +  ll+++ + ++l+Ava +  i     n+   +    l+ lv  L    ++ 
  KKY18903.1 290 KLVTSLVQLMDSGTPKVQCQAALALRNLASDEKYQLEivRNrGLPPLLRLLQSSYIPLILSAVACIRNIsihPLNESPIIdaGFLKPLVDLLG---STG 385
                 688999***********************9977655411333699************************554222222223355666666665...889 PP

                 -HHHHHHHHHHHCC---SSHHHH.....HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST.....HHHCCHHCHHHHHHSSCC CS
   Adaptin_N 205 dpwlqvkiiklltrlarqepeersk...kellesllnllqssnnaVlletvnlivelapkne.....livlavnaLvrllsskde 281
                 ++ +q+  i++l++la++ ++ ++    +  +++ ++l+ ++  +V  e+  +i  la ++e     l+  + ++L+ l +s+  
  KKY18903.1 386 NEEIQCHAISTLRNLAASSDRNKQLvleAGAVQKCKELVLQVPLSVQSEMTAAIAVLALSDElkthlLNLGIFECLIPLTDSESI 470
                 9****************99988844676777888888888888888888888888888888866665444556666666666655 PP

>> V-ATPase_H_N  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     4e-06    0.0045      88     216 ..     109     266 ..     101     267 .. 0.75
   2 !   19.7   0.8   3.8e-07   0.00043     104     281 ..     241     423 ..     214     435 .. 0.77
   3 ?   -1.5   0.0       1.1   1.2e+03     110     157 ..     508     559 ..     498     581 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4e-06
  V-ATPase_H_N  88 ksrvelflslakkeeqdpwkpflkllnrqddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlss........................ 160
                   +s+ ++fl++++ + +d ++p+l ll+++d  +++ a+  l +l+v  ++k +     +L  l  l+++ +s                         
    KKY18903.1 109 DSGLQYFLDVREVD-RDTLEPILFLLQSSDIEVQRAASAALGNLAVNTENKVSI---VLLGGLPPLIRQMMSPnvevqcnavgcitnlatheenkak 201
                   56789999988855.569****************************99999998...5555555555543333444456667777777777777777 PP

  V-ATPase_H_N 161 ................stnevieiavrllqellrtkeyRelfveadgvstlisilrstvanstrvgiQlqYq 216
                                   ++  v+  a+ +l ++ ++++ R+++v+a  +++l+++l       +++++++qY+
    KKY18903.1 202 iarsgalgpltrlaksKDMRVQRNATGALLNMTHSDDNRQQLVNAGAIPVLVQLL-------SSQDMDVQYY 266
                   7777777777777776666677888888888888889999999888888888888.......6677777776 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 3.8e-07
  V-ATPase_H_N 104 d......pwkpflkllnrqddfivllalrllakllvqgkkksnklv..esaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfveadgv 192
                   +       + ++++ll++qd  ++  + + l +++v ++++++ ++  ++++  l+ql+ s     t +v+  a+ +l +l++ ++y   +v + g+
    KKY18903.1 241 QqlvnagAIPVLVQLLSSQDMDVQYYCTTALSNIAVDAANRKKLAQteSKLVTSLVQLMDS----GTPKVQCQAALALRNLASDEKYQLEIVRNRGL 333
                   24556656777888**********************9998888754534444555555555....444566688999******************** PP

  V-ATPase_H_N 193 stlisilrstvanstrvgiQlqYqvllclWlLsFekkiaeelvkkkelipllvdilrdsvKEKvtRvilatlrNllekaekss.........kelaa 280
                   ++l+++l       +++ i l+  ++ c+  +s  +     + +   +++ lvd+l ++  E +   +++tlrNl ++   ++         +++++
    KKY18903.1 334 PPLLRLL-------QSSYIPLILSAVACIRNISIHPLNESPIIDAG-FLKPLVDLLGSTGNEEIQCHAISTLRNLAASSDRNKqlvleagavQKCKE 422
                   *******.......789999****************9999998888.****************************9998865445555555444444 PP

  V-ATPase_H_N 281 v 281
                   +
    KKY18903.1 423 L 423
                   4 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.1
  V-ATPase_H_N 110 lk.llnrqddfivllalrllakllvqgkkksnklv..esaLnrllqlLss.q 157
                   lk +l + d  ++++a+  +++ll  +++k  +l    +++ ++++ +s+ +
    KKY18903.1 508 LKrFLASGDPTFQHIAIWTAVQLLESNDQKLVGLIakAEDVIQMIKAISDkN 559
                   5557777888888888888888888888887776666666666666666543 PP

>> KAP  Kinesin-associated protein (KAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.7   1.9e-11   2.1e-08     295     532 ..     170     414 ..     133     468 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 1.9e-11
         KAP 295 lvkaldrdniellilvvsflkklsivvenkdemaeldiveklaklvqsehedllnitlklllnlsfdtglrrkmikvgllpklvalladdkh..klial 391
                 l++ +   n+e+    v  +  l+   enk ++a    +  l++l +s+   + + +   lln++   + r++++++g +p lv+ll+ ++   +  + 
  KKY18903.1 170 LIRQMMSPNVEVQCNAVGCITNLATHEENKAKIARSGALGPLTRLAKSKDMRVQRNATGALLNMTHSDDNRQQLVNAGAIPVLVQLLSSQDMdvQYYCT 268
                 788888889999999999********************************9999999999***************************987651145566 PP

         KAP 392 kvlyhvslddkvksmftytdc.iqmlmkallesldekvdlelialcinlalnkrnaqlivegnglkllmkralkfkdalllk...llrnlsqhdgslkl 486
                 + l  +++d   +  +++t+  +   +  l++s + kv+ +      nla + +    iv  +gl  l++       +l+l     +rn+s h    + 
  KKY18903.1 269 TALSNIAVDAANRKKLAQTESkLVTSLVQLMDSGTPKVQCQAALALRNLASDEKYQLEIVRNRGLPPLLRLLQSSYIPLILSavaCIRNISIHP-LNES 366
                 7899******99999999997333344567899999***997666679**999998889*******999887777778876522279******8.5566 PP

         KAP 487 qfid..yvgdlarilkesddeelvveclgilanlaltdldyelilkef 532
                  +id  ++  l  +l  + +ee+   ++ +l nla +    ++++ e 
  KKY18903.1 367 PIIDagFLKPLVDLLGSTGNEEIQCHAISTLRNLAASSDRNKQLVLEA 414
                 667655899999**********************98654444444444 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0       1.8     2e+03      15      26 ..      27      38 ..      11      39 .. 0.75
   2 ?   -1.6   0.0       6.1   6.8e+03       2      14 ..      85      97 ..      84     135 .. 0.53
   3 ?    3.0   0.0      0.19   2.1e+02       1      13 [.     140     152 ..     140     162 .. 0.92
   4 ?    2.0   0.0      0.42   4.8e+02       1      26 [.     222     257 ..     222     258 .. 0.85
   5 ?    0.6   0.0       1.1   1.3e+03       1      15 [.     263     277 ..     263     279 .. 0.84
   6 !    9.9   0.2    0.0011       1.3       1      26 [.     306     341 ..     306     342 .. 0.96
   7 ?    0.6   0.0       1.1   1.3e+03       1      14 [.     472     485 ..     472     489 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 1.8
                GGGHHHHHHHCT CS
    HEAT_PBS 15 eeaipaLleaLq 26
                 ea++ Ll+ L+
  KKY18903.1 27 REAVADLLQYLE 38
                79******9998 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 6.1
                HHHHHHHHHHCTS CS
    HEAT_PBS  2 RraAakaLgqlgd 14
                +r+Aa   ++++ 
  KKY18903.1 85 QRSAALTFAEITE 97
                6777777777665 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.19
                 HHHHHHHHHHHCT CS
    HEAT_PBS   1 vRraAakaLgqlg 13 
                 v+raA  aLg+l 
  KKY18903.1 140 VQRAASAALGNLA 152
                 89********996 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.42
                 HHHHHHHHHHHCTS..........GGGHHHHHHHCT CS
    HEAT_PBS   1 vRraAakaLgqlgd..........eeaipaLleaLq 26 
                 v+r+A+ aL ++++            aip+L+++L 
  KKY18903.1 222 VQRNATGALLNMTHsddnrqqlvnAGAIPVLVQLLS 257
                 789999999999998888888888889999999985 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHCTSG CS
    HEAT_PBS   1 vRraAakaLgqlgde 15 
                 v+++++ aL ++  +
  KKY18903.1 263 VQYYCTTALSNIAVD 277
                 89********99765 PP

  == domain 6  score: 9.9 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHCTS..........GGGHHHHHHHCT CS
    HEAT_PBS   1 vRraAakaLgqlgd..........eeaipaLleaLq 26 
                 v++ Aa aL +l +           + +p+Ll++Lq
  KKY18903.1 306 VQCQAALALRNLASdekyqleivrNRGLPPLLRLLQ 341
                 8999******************************98 PP

  == domain 7  score: 0.6 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHCTS CS
    HEAT_PBS   1 vRraAakaLgqlgd 14 
                 v+ + a aLg+l +
  KKY18903.1 472 VQGNSAAALGNLSS 485
                 77889******976 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.3   1.5e+03     111     119 ..     121     129 ..      66     164 .. 0.51
   2 !   14.6   0.4   2.3e-05     0.025      24     126 ..     168     274 ..     159     310 .. 0.77
   3 !   10.9   0.3   0.00031      0.34      24     131 ..     209     322 ..     205     338 .. 0.80
   4 ?    3.2   0.0     0.071        80      40      94 ..     350     410 ..     311     426 .. 0.80
   5 ?    0.2   0.0      0.63     7e+02      39      88 ..     435     486 ..     432     496 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.3
        Cnd1 111 csewgqiti 119
                 +++++   i
  KKY18903.1 121 VDRDTLEPI 129
                 333333333 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2.3e-05
        Cnd1  24 epLrkrLkDedpyVRktaaivvakL..ilnd....mvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgq 116
                 +pL +++  ++  V+ +a+ ++++L  +  +     +  +g l  l +l + ++ rV+ na  al ++ + ++n    ++   i  l++ l + + + q
  KKY18903.1 168 PPLIRQMMSPNVEVQCNAVGCITNLatH--EenkaKIARSGALGPLTRLAKSKDMRVQRNATGALLNMTHSDDNRQQLVNAGAIPVLVQLLSSQDMDVQ 264
                 68889999999**************642..32333677889****************************998888877888888888876666666666 PP

        Cnd1 117 itilefLlsy 126
                  +  ++L++ 
  KKY18903.1 265 YYCTTALSNI 274
                 6666666654 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00031
        Cnd1  24 epLrkrLkDedpyVRktaaivvakL....ilndmvkekgflselaklleDenprVvanalaalteisek..senaiynllpdiisklsdalnecsewgq 116
                  pL++  k +d+ V+++a  +++++     +++   + g +  l +ll+ ++  V+  + +al++i+    + +++ +  ++++ +l++ +++ + + q
  KKY18903.1 209 GPLTRLAKSKDMRVQRNATGALLNMthsdDNRQQLVNAGAIPVLVQLLSSQDMDVQYYCTTALSNIAVDaaNRKKLAQTESKLVTSLVQLMDSGTPKVQ 307
                 7999999******************75444455899999****************************99766678888889999998876666666666 PP

        Cnd1 117 itilefLlsyipkdk 131
                 ++   +L +  +++k
  KKY18903.1 308 CQAALALRNLASDEK 322
                 666666555555555 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.071
        Cnd1  40 taaivvakL....ilndmvkekgflselakll.eDenprVvanalaalteisek.senaiy 94 
                  a+ ++ ++    +++  +++ gfl+ l +ll +  n++++  a++ l +++   + n+ +
  KKY18903.1 350 SAVACIRNIsihpLNESPIIDAGFLKPLVDLLgSTGNEEIQCHAISTLRNLAASsDRNKQL 410
                 688888888888889999**************9999**************99985445444 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.63
        Cnd1  39 ktaaivvakL..ilndmvkekgflselaklleDenprVvanalaalteisek 88 
                 +taai+v+ L   l++   + g+++ l  l + e+ +V+ n+ aal ++s+k
  KKY18903.1 435 MTAAIAVLALsdELKTHLLNLGIFECLIPLTDSESIEVQGNSAAALGNLSSK 486
                 5899999999877778888899898888888889999*********999998 PP

>> DUF3361  Domain of unknown function (DUF3361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1    0.0014       1.5      66     131 ..     135     199 ..     120     208 .. 0.85
   2 !    7.8   0.7    0.0027         3      66     139 ..     217     287 ..     211     298 .. 0.82
   3 ?   -0.1   0.0      0.69   7.7e+02      69     119 ..     304     353 ..     286     367 .. 0.49
   4 ?    3.6   0.1      0.05        56      99     137 ..     374     413 ..     348     427 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0014
     DUF3361  66 aadasilqrslaiLesivlnsselyelvekevtlesLiehLqssnqeiqtnalaLlnALllkadds 131
                 + d ++++++ a L ++++n ++++++v     l+ Li+ + s+n e+q+na+  ++ L ++ +++
  KKY18903.1 135 SSDIEVQRAASAALGNLAVNTENKVSIVLLG-GLPPLIRQMMSPNVEVQCNAVGCITNLATHEENK 199
                 35999*****************999999765.6899********************9998876644 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0027
     DUF3361  66 aadasilqrslaiLesivlnsselyelvekevtlesLiehLqssnqeiqtnalaLlnALllkaddskrkelaet 139
                 ++d +++++++  L ++ +++++  +lv+    ++ L++ L+s++  +q ++ + l  + + a   +rk+la+t
  KKY18903.1 217 SKDMRVQRNATGALLNMTHSDDNRQQLVNAG-AIPVLVQLLSSQDMDVQYYCTTALSNIAVDAA--NRKKLAQT 287
                 5799*****************9888888765.789***************99988888887777..55555544 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.69
     DUF3361  69 asilqrslaiLesivlnsselyelvekevtlesLiehLqssnqeiqtnala 119
                 ++++ ++   L +++  ++ +  ++ ++  l+ L++ Lqss   +  +a+a
  KKY18903.1 304 PKVQCQAALALRNLASDEKYQL-EIVRNRGLPPLLRLLQSSYIPLILSAVA 353
                 3333222223344333333222.2334445556666666665555555555 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.05
     DUF3361  99 lesLiehLqss.nqeiqtnalaLlnALllkaddskrkela 137
                 l+ L++ L s+ n+eiq++a++ l  L + +d++k+  l 
  KKY18903.1 374 LKPLVDLLGSTgNEEIQCHAISTLRNLAASSDRNKQLVLE 413
                 5668888855516669999999999999888866654443 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.17   1.9e+02       9      69 ..     148     204 ..     141     230 .. 0.78
   2 ?    3.9   0.1     0.049        55       8      68 ..     270     329 ..     263     331 .. 0.75
   3 ?   -1.4   0.0       2.1   2.3e+03      44      56 ..     347     358 ..     321     361 .. 0.58
   4 !    7.4   0.1    0.0038       4.3      42      77 ..     386     421 ..     380     438 .. 0.80
   5 ?    0.8   0.0      0.44   4.9e+02      41      62 ..     515     536 ..     493     563 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.17
  Atx10homo_assoc   9 lgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69 
                      lgnl+  n+e++  ++ l+gl+ ++ q+     n  ++  a+ +i nL  + een++ +a+
       KKY18903.1 148 LGNLAV-NTENKVSIVLLGGLPPLIRQMMS--PNVEVQCNAVGCITNLATH-EENKAKIAR 204
                      666665.67888889999999999998775..455678889999*999765.677777765 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.049
  Atx10homo_assoc   8 llgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelva 68 
                       l+n++ +  + ++  + +++l + L q  +D+  P ++ +a la+rnL  + +   e+v+
       KKY18903.1 270 ALSNIAVDAANRKKLAQTESKLVTSLVQL-MDSGTPKVQCQAALALRNLASDEKYQLEIVR 329
                      56666666666666666666677777764.799****************998887777665 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.1
  Atx10homo_assoc  44 firewailairnL 56 
                      +i   a+ +irn+
       KKY18903.1 347 LI-LSAVACIRNI 358
                      33.3588888886 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0038
  Atx10homo_assoc  42 nPfirewailairnLlegneenqelvaeLeakgvvd 77 
                      n  i+ +ai ++rnL  ++ +n++lv e  a +  +
       KKY18903.1 386 NEEIQCHAISTLRNLAASSDRNKQLVLEAGAVQKCK 421
                      6668899******************97655555444 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.44
  Atx10homo_assoc  41 nnPfirewailairnLlegnee 62 
                       +P ++  ai++  +Lle+n +
       KKY18903.1 515 GDPTFQHIAIWTAVQLLESNDQ 536
                      68999*************9974 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.15   1.6e+02      48     114 ..     130     194 ..     119     196 .. 0.74
   2 ?    4.5   0.0     0.032        36      57     110 ..     176     231 ..     148     237 .. 0.79
   3 ?    2.9   0.1       0.1   1.1e+02      73     112 ..     235     274 ..     211     278 .. 0.73
   4 !    6.4   0.3    0.0084       9.4      43     112 ..     248     317 ..     234     322 .. 0.72
   5 ?    3.5   0.1     0.063        71      32      68 ..     280     315 ..     277     361 .. 0.75
   6 ?    0.8   0.0      0.45     5e+02      85     112 ..     373     400 ..     331     404 .. 0.63
   7 ?    1.5   0.0      0.27   3.1e+02      44      88 ..     374     418 ..     368     445 .. 0.66
   8 ?   -2.3   0.0       4.1   4.6e+03      48      74 ..     528     555 ..     509     564 .. 0.62

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.15
  V-ATPase_H_C  48 iklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkllv 114
                   + ll +s+d +v+  a   +g+l+ +++++ +++  l++   +++ + +++ ev+ +A  ++ +l +
    KKY18903.1 130 LFLL-QSSDIEVQRAASAALGNLAVNTENKVSIV-LLGGLPPLIRQMMSPNVEVQCNAVGCITNLAT 194
                   4556.47777888888888888888877766666.56777777888889999999999999988765 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.032
  V-ATPase_H_C  57 ktvlavalnDigelvkl..lpegkkvleklkaKekimellehedeevkyeALkavq 110
                   + ++ v +n +g +++l  ++e k+ +++ +a   + +l +++d +v+++A  a+ 
    KKY18903.1 176 SPNVEVQCNAVGCITNLatHEENKAKIARSGALGPLTRLAKSKDMRVQRNATGALL 231
                   34578999999999887335678888899999999*************99977765 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.1
  V-ATPase_H_C  73 llpegkkvleklkaKekimellehedeevkyeALkavqkl 112
                   + ++ ++ l + +a  ++++ll+++d +v+y   +a++++
    KKY18903.1 235 HSDDNRQQLVNAGAIPVLVQLLSSQDMDVQYYCTTALSNI 274
                   345566666678889999*************988888776 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0084
  V-ATPase_H_C  43 llkkLiklleeskdktvlavalnDigelvkllpegkkvl.eklkaKekimellehedeevkyeALkavqkl 112
                    +  L++ll +s+d  v+  +   +++++  + + kk+  ++ k  + +++l+++  ++v+ +A +a+ +l
    KKY18903.1 248 AIPVLVQLL-SSQDMDVQYYCTTALSNIAVDAANRKKLAqTESKLVTSLVQLMDSGTPKVQCQAALALRNL 317
                   566788999.5777777777777777777776777776624455578899999999999999998888766 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.063
  V-ATPase_H_C  32 naekleeknfkllkkLiklleeskdktvlavalnDig 68 
                   n +kl + + kl+ +L++l++ s +++v++ a+  + 
    KKY18903.1 280 NRKKLAQTESKLVTSLVQLMD-SGTPKVQCQAALALR 315
                   778898999999999999994.555555444444444 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 0.45
  V-ATPase_H_C  85 kaKekimellehedeevkyeALkavqkl 112
                     K  +  l ++ +ee++ +A+ ++ +l
    KKY18903.1 373 FLKPLVDLLGSTGNEEIQCHAISTLRNL 400
                   3344444444556999*****9999876 PP

  == domain 7  score: 1.5 bits;  conditional E-value: 0.27
  V-ATPase_H_C  44 lkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKe 88 
                   lk L++ll ++ ++++++ a++ + +l+   ++ k+++ + +a +
    KKY18903.1 374 LKPLVDLLGSTGNEEIQCHAISTLRNLAASSDRNKQLVLEAGAVQ 418
                   677777886555667777777777777777777777776655533 PP

  == domain 8  score: -2.3 bits;  conditional E-value: 4.1
  V-ATPase_H_C  48 iklleeskdktvlava.lnDigelvkll 74 
                   ++lle++++k v  +a + D+ +++k +
    KKY18903.1 528 VQLLESNDQKLVGLIAkAEDVIQMIKAI 555
                   5566433334443333256777777665 PP

>> IFRD  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.14   1.6e+02     213     253 ..      57      99 ..      46     111 .. 0.79
   2 ?    5.4   0.1    0.0077       8.6     222     247 ..     124     149 ..     112     156 .. 0.84
   3 ?    5.3   0.3    0.0082       9.2     203     245 ..     230     270 ..     222     303 .. 0.72
   4 ?    0.0   0.1      0.32   3.6e+02     212     243 ..     281     311 ..     267     317 .. 0.69
   5 ?   -2.2   0.0       1.5   1.7e+03     164     203 ..     545     585 ..     542     586 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.14
        IFRD 213 nkkleedl...eealealvelLdssdvevriAAGeaiALlfEls 253
                  + +e+d+   e+ l+al++l  s++v+++  A  ++A + E +
  KKY18903.1  57 LQRAETDFftgEP-LRALSTLVYSDNVDLQRSAALTFAEITERG 99 
                 4445555578555.9***********************999976 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0077
        IFRD 222 ealealvelLdssdvevriAAGeaiA 247
                 ++le    lL+ssd+ev+ AA+ a++
  KKY18903.1 124 DTLEPILFLLQSSDIEVQRAASAALG 149
                 45888889**************9986 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0082
        IFRD 203 LltllpssklnkkleedleealealvelLdssdvevriAAGea 245
                 Ll   +s + +++l +    a++ lv+lL+s+d++v+   + a
  KKY18903.1 230 LLNMTHSDDNRQQLVN--AGAIPVLVQLLSSQDMDVQYYCTTA 270
                 4444444444444444..679****************765555 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.32
        IFRD 212 lnkkleedleealealvelLdssdvevriAAG 243
                  +k+++++ ++++  lv+l+ds   +v+  A 
  KKY18903.1 281 RKKLAQTE-SKLVTSLVQLMDSGTPKVQCQAA 311
                 33333332.67899999999999999999886 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 1.5
        IFRD 164 ieelmeflleifssdgqsieaadsas.ka.lvtaalsawglL 203
                 +e++ +++  i  ++++s ++ d+++ +a +v+ a ++++lL
  KKY18903.1 545 AEDVIQMIKAISDKNIESDDE-DAEDgEAeVVALARRSLELL 585
                 677777777777777776655.44443446888888888877 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       3.9   4.3e+03      26      61 ..     123     158 ..     116     182 .. 0.76
   2 ?   -0.3   0.0       1.5   1.6e+03       9      86 ..     147     224 ..     139     237 .. 0.60
   3 ?   10.0   0.1    0.0009         1      27      89 ..     247     311 ..     225     320 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.9
  Vac14_Fab1_bd  26 eeivkpvlkcfsDkdsrvRyyacEslyniakvakge 61 
                    ++ ++p+l  ++ +d +v   a+ +l n+a  ++++
     KKY18903.1 123 RDTLEPILFLLQSSDIEVQRAASAALGNLAVNTENK 158
                    567788888888888888888888888877666555 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.5
  Vac14_Fab1_bd   9 gLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvks 86 
                    +L  +a++ e+k++ +l   ++p+++ +   + +v   a+ ++ n+a   ++++    +  +  l++l+  +d  v++
     KKY18903.1 147 ALGNLAVNTENKVSIVLLGGLPPLIRQMMSPNVEVQCNAVGCITNLATHEENKAKIARSGALGPLTRLAKSKDMRVQR 224
                    666666666666666666667777777777777777777777766666665555555555555555555555555544 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.0009
  Vac14_Fab1_bd  27 eivkpvlkcfsDkdsrvRyyacEslyniakva..kgevlkllneifdalvklvaDsdesvksgae 89 
                      ++++++ +s +d  v yy + +l nia  a  ++++ ++ +++ + lv+l+    ++v+  a+
     KKY18903.1 247 GAIPVLVQLLSSQDMDVQYYCTTALSNIAVDAanRKKLAQTESKLVTSLVQLMDSGTPKVQCQAA 311
                    4688999*********************8643115556666778888888888777777775554 PP

>> YqfD  Putative stage IV sporulation protein YqfD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.3   1.4e+03      44      79 ..     139     174 ..     135     178 .. 0.85
   2 ?   10.1   0.0   0.00023      0.26      44      93 ..     305     354 ..     293     360 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.3
        YqfD  44 kislkdfkklrkiarktgcrvkivekkGlpfllkrl 79 
                 +++ ++  +l ++a +t+ +v+iv   Glp l++++
  KKY18903.1 139 EVQRAASAALGNLAVNTENKVSIVLLGGLPPLIRQM 174
                 5666777889999*****************999986 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00023
        YqfD  44 kislkdfkklrkiarktgcrvkivekkGlpfllkrlkkrkglligallfl 93 
                 k++ ++  +lr++a   +++++iv+ +Glp ll+ l+  ++ li  ++++
  KKY18903.1 305 KVQCQAALALRNLASDEKYQLEIVRNRGLPPLLRLLQSSYIPLILSAVAC 354
                 678888899***************************99998777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.57
# Mc/sec: 3139.22
//
Query:       KKY18904.1  [L=239]
Description: putative had superfamily (subfamily iiia) phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-42  145.0   0.0    1.8e-42  144.8   0.0    1.0  1  PGP_phosphatase  Mitochondrial PGP phosphatase
    9.3e-06   25.6   0.0    1.8e-05   24.7   0.0    1.4  1  Hydrolase_like   HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> PGP_phosphatase  Mitochondrial PGP phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.8   0.0     2e-46   1.8e-42       9     166 ..      17     184 ..      10     186 .. 0.95

  Alignments for each domain:
  == domain 1  score: 144.8 bits;  conditional E-value: 2e-46
  PGP_phosphatase   9 kllknpslvlPhltvptfrqlpieig....kkkektikavvlDKDnclaapkedkvaeeikekleelr.....evypeksilivSNsaGssddk 93 
                      +l+++p l+ Phl++ptf ++p+++g    k + +ti+++vlD Dn+l++ ++   ++++ +++e+++     ++ p+ s+livSN+aG+++++
       KKY18904.1  17 ALITKPALLKPHLSFPTFLDVPLQVGpllrKDNPPTIRGLVLDNDNTLSPSRDPYYHPAYLKAIEAFKqaepfSTNPN-SMLIVSNRAGAKPEY 109
                      6899*************************999************************************8877777778.*************** PP

  PGP_phosphatase  94 daekaealekktgipVlrhk...ekKPgcaeevleyfkerkvveeadeiavvgDRllTdvllanmmGslgvwlrdg 166
                      d+e  e+lek++ +pVl+hk   e KP  a  vle+f++++v ++++eiavvgDRl+Tdvl+a+ mGs++++++dg
       KKY18904.1 110 DGEV-EILEKELSLPVLHHKgekEIKPVIAPMVLEHFSKNNVTSDPQEIAVVGDRLFTDVLMARLMGSWSIYISDG 184
                      *985.89************998888*************************************************98 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.1e-09   1.8e-05      13      57 ..     146     190 ..     134     198 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2.1e-09
                     HHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTT CS
  Hydrolase_like  13 alevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrped 57 
                       + ++sdp+e+ ++GDrl tD+++A+ +G  s+ +  G ++pe 
      KKY18904.1 146 SKNNVTSDPQEIAVVGDRLFTDVLMARLMGSWSIYISDGWKDPEN 190
                     44556999*******************************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 1489.36
//
Query:       KKY18905.1  [L=426]
Description: putative small nuclear ribonucleoprotein sm d3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-14   50.8   0.2    1.7e-13   50.0   0.2    1.4  1  LSM              LSM domain
    6.9e-08   33.1   0.0      2e-07   31.6   0.0    1.8  1  Adaptin_binding  Alpha and gamma adaptin binding protein p34
  ------ inclusion threshold ------
      0.048   13.8   0.0          1    9.6   0.0    2.6  2  SM-ATX           Ataxin 2 SM domain


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.2   2.9e-17   1.7e-13       2      63 ..      14      74 ..      13      76 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 2.9e-17
                HHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTETEEEEEEEEEEEGGGEE CS
         LSM  2 flkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkkekrklglvliRGnniv 63
                +l++ +++ vt+e ++g+++rG L + +++mN++L+d+++t +d+ ++ +l++v+iRG++i+
  KKY18905.1 14 LLNEAQGHVVTLEITSGQVYRGHLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHIR 74
                799******************************************.***************8 PP

>> Adaptin_binding  Alpha and gamma adaptin binding protein p34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   3.4e-11     2e-07       1     117 [.     265     417 ..     265     421 .. 0.76

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 3.4e-11
  Adaptin_binding   1 ekqGieRirEaLethmWsg.lelkkqtaslsnrnaslet...........eadeaqlekeeeeqdpsqpastepdksaaesesadaef...... 76 
                      ek Gi Ri+E+Le+ +W + +   +++a   ++++  e               e  +e+  +++++  p+           ++ d+ef      
       KKY18905.1 265 EKLGIPRIIEVLEAIDWLSgSSGLSGSAVDVQSDDGSEDdgplrfsngpeDDMEIRREMMGLSMAIRYPEH----------DQSDEEFgpdmqp 348
                      899**************653777777777666666666689999998876444555666666666666632..........2222222333335 PP

  Adaptin_binding  77 ............................lfggdeaarledlesllsklqqakdnvrnlpdeeRkkeAak 117
                                                   + gde+ ++e+l  l++++ +++++++ ++++eR+k+A +
       KKY18905.1 349 egstlqglisgsvkaqddtfprtfdlpgFDIGDEDLKIESLPGLMDRVLAIREQAAGMSKQEREKYARR 417
                      566888888889999999999999**998889***********************************75 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00017         1       7      44 ..      14      49 ..      12      66 .. 0.83
   2 ?    1.0   0.0     0.081   4.9e+02      11      40 ..     288     318 ..     285     345 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00017
                HHHTTTTSEEEEEETTS-EEEEEEEEE-T..T--EEEE CS
      SM-ATX  7 lltslvGkevevtvknGevyeGifstvslekdfsvvLk 44
                ll+   G++v++++++G vy+G +  +    +++v Lk
  KKY18905.1 14 LLNEAQGHVVTLEITSGQVYRGHLLEAED--NMNVQLK 49
                678889****************8888877..7777777 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.081
                 TTTSEEEEEETTS-EEEEEEEEE-T...T-- CS
      SM-ATX  11 lvGkevevtvknGevyeGifstvsl.ekdfs 40 
                 l G+ v+v+  +G+   G ++ ++  e+d++
  KKY18905.1 288 LSGSAVDVQSDDGSEDDGPLRFSNGpEDDME 318
                 5699*********998887776666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 2633.83
//
Query:       KKY18906.1  [L=252]
Description: putative mrna turnover protein mrt4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-19   68.9   0.0    4.4e-19   68.2   0.0    1.3  1  RL10P_insert   Insertion domain in 60S ribosomal protein L10P
    3.7e-17   62.3   0.0    6.1e-17   61.6   0.0    1.3  1  Ribosomal_L10  Ribosomal protein L10


Domain annotation for each model (and alignments):
>> RL10P_insert  Insertion domain in 60S ribosomal protein L10P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   4.9e-23   4.4e-19       1      71 []     128     218 ..     128     218 .. 0.92

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 4.9e-23
  RL10P_insert   1 AraGtiAtedviipagplela............PgsiepeLrklglptklkkGkivleed........ylvckkGetltseqaqlLklLgi 71 
                   Ar+G++A++ +++p g+   +            P  +ep+Lrklg+ptk+++Gk++lee         y+vc++Ge+l+s+q++lLk++g+
    KKY18906.1 128 ARSGNVASRIFTLPRGQELFTqygvdggeddpiPMAVEPQLRKLGVPTKVVRGKVFLEEGagmdddegYVVCREGEVLDSRQTTLLKIFGV 218
                   9***************65555599*******99999**********************6666667777**********************8 PP

>> Ribosomal_L10  Ribosomal protein L10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.0   6.8e-21   6.1e-17       1      97 [.      18     121 ..      18     123 .. 0.94

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 6.8e-21
                    SSCCCHCCCCCCCCCCCTTSSEEEEEE-TTS-HHHHHHCCCHH.HHHGCEEEEESCCCCCCCCHCCTSS.S......SCGCCSSSEEEEEESS-TC CS
  Ribosomal_L10   1 ktkekKeelvkelkellkkyksvvvvdyegltvaqlqelRkkl.rengaelkvvKntlmrrAleetgeeek......lkellkgpvalvftnedpv 89 
                    kt+e K+ l ++++ +++++ +++v+++++++++ +++lR+ l  +++++++ +K ++m +Al++t+e ++      l+++l+g+v+l+f++ + +
     KKY18906.1  18 KTPEHKKILAQSIQSAASSHPYIYVFSVADMRNNFIKDLRNTLsESSESRIMLGKTRIMAIALGTTPETACedgvegLAPYLRGEVGLLFSDREEN 113
                    5899***************************************55559********************974589999******************* PP

                    HHHHCCCC CS
  Ribosomal_L10  90 alakvlee 97 
                    ++++vle+
     KKY18906.1 114 SVKEVLES 121
                    *****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1697.75
//
Query:       KKY18907.1  [L=330]
Description: putative transcriptional activator xlnr [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 1983.42
//
Query:       KKY18908.1  [L=742]
Description: putative high-affinity glucose transporter rgt2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.3e-106  355.9  17.5   3.9e-106  355.6  17.5    1.1  1  Sugar_tr         Sugar (and other) transporter
    9.8e-17   60.9  22.7    9.8e-17   60.9  22.7    1.6  1  MFS_1            Major Facilitator Superfamily
    2.2e-09   37.5   0.0    5.3e-09   36.3   0.0    1.6  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    5.7e-07   29.4   0.1    1.5e-06   28.0   0.1    1.6  1  FR47             FR47-like protein
    3.7e-05   23.7   0.0    6.3e-05   22.9   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    0.00011   22.6   0.0     0.0003   21.1   0.0    1.8  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.16   12.0   0.0       0.33   11.0   0.0    1.4  1  Acetyltransf_9   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  355.6  17.5  1.5e-109  3.9e-106       2     452 .]      20     473 ..      19     473 .. 0.94

  Alignments for each domain:
  == domain 1  score: 355.6 bits;  conditional E-value: 1.5e-109
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTST.T--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfg.lsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 ++++++g ++fgYd+ + +++l++  f+  +g ++++++s+  ss l ++++si +vG+++G+l ++l+gd++GR+ +l  a v +vig + q+ a+  
  KKY18908.1  20 CILVSIGAFQFGYDSSYFSGILAMEPFLEIYGhYDTAQGSYVLSSRLESIVTSIINVGELLGALSSYLVGDFLGRRGGLFLAMVAVVIGVIFQVSAN-- 116
                 899***********************998887466777777779999**************************************************.. PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS---HH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl.nktsnadgwrillglqlvpallllill.lflPESPr 196
                  ++ +li+gR+++G++vG++s++vP+y++  Ap++ Rgalvslyq +i +G l+++i+++ + n+ ++   +ri++ +ql+++++l+  l +++PESPr
  KKY18908.1 117 -NLGLLITGRLILGFAVGIISCMVPLYLADCAPTRFRGALVSLYQQCIGLGLLLGIIVDYSTkNRADY-GSFRIPMTVQLIFPIILVPTLlFLAPESPR 213
                 .9************************************************************656666.9*************99886552667***** PP

                 HHHHTT-HHHHHHHHHHHHHC..HHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHH CS
    Sugar_tr 197 ylvekgkeeeakevlaklrge..edadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvt 293
                 +lvekgk+ +a++ la+l+++  + ++re+ +++++   e++ ++asw  l++     +++ +g++lq++qq +Gin+i+ y+ ++f ++g+++s+l+ 
  KKY18908.1 214 WLVEKGKHAQARAALARLNNNnpDSVNREMSAIQSAVGLEERDKTASWLDLFKWGPEGRKAYLGFALQALQQASGINFITSYGVVFFTDIGITNSFLIQ 312
                 *****************9988789999*************9999********9955899**************************************** PP

                 HHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHH CS
    Sugar_tr 294 iivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiav 392
                 +++++v f +++++ f+v+rfGRR++lll+++  +i+++i+g++  ++ ++  + + +++ ++++f+++f++gwgp++wv+ sE+++ + R+  +a+++
  KKY18908.1 313 VGLYCVGFPTIVASQFFVERFGRRPVLLLSGILNSIVLLIVGGCGVATDKT-LSLEKAIVGMVYVFMVVFNFGWGPTVWVVTSEISTGKNRGRLMALST 410
                 ******************************************555555555.699999999999*********************************** PP

                 HHHHHHHHHHHHHHHHHHCHHH...T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 393 avnwlanflisllfpiiteaig...ggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                  +nwl++ l+s++fp++ +  g   g+++++++++l++++ ++vff +pet gr+le+i++lf
  KKY18908.1 411 SSNWLFTWLVSFTFPYLYNPDGaglGAKIGFLYGALMIVAQVWVFFYLPETSGRSLEDIDYLF 473
                 *****************998888889**********************************987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9  22.7   3.8e-20   9.8e-17       2     345 ..      24     413 ..      23     422 .. 0.84

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 3.8e-20
       MFS_1   2 llaaflsalarsilgpalpl.alaedlg..........ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.ll 88 
                 +++af  ++++s ++ +l +    e +g          +s    ++++++  +g ++++l    ++d +Grr  l+l++++ ++g +++ ++++   ll
  KKY18908.1  24 SIGAFQFGYDSSYFSGILAMePFLEIYGhydtaqgsyvLSSRLESIVTSIINVGELLGALSSYLVGDFLGRRGGLFLAMVAVVIG-VIFQVSANNLgLL 121
                 6889999999999999999888888888777777777777777788***************************************.77776555566** PP

       MFS_1  89 lvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgg...llasslgWravfyilaivsllafvlfllllpeepperkrksp 184
                 + +r++ G++ g++  ++  ++ad +p + rg  ++l++ +++lG +lg ++       a+++++r ++ +  i+ +++  +  ll+++++++r+ +++
  KKY18908.1 122 ITGRLILGFAVGIISCMVPLYLADCAPTRFRGALVSLYQQCIGLGLLLGIIVDYstkNRADYGSFRIPMTVQLIFPIIL--VPTLLFLAPESPRWLVEK 218
                 *************************************************999994443466777**************9..7789************99 PP

       MFS_1 185 keee...............................kgtgpaplvp..awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglll 250
                  +                                 ++++ a++++   w+   ++ +l  + + +l  + g+++++++  ++  ++ g++   + ++ +
  KKY18908.1 219 GKHAqaraalarlnnnnpdsvnremsaiqsavgleERDKTASWLDlfKWGPEGRKAYLG-FALQALQQASGINFITSYGVVF-FTDIGIT--NSFLIQV 313
                 9999************************9999999788888887777688888888775.7777777788999999999998.999****..6666667 PP

       MFS_1 251 allalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllll......vlvliGfglgfvfpsllalasdlappeeagtasglfnt 343
                 +l+++++ +  + + +++ r+grr+ lll+++l ++++l++  ++v+++++l+l       v+v++ ++ +   p++++++s+    +++g++++l ++
  KKY18908.1 314 GLYCVGF-PTIVASQFFVERFGRRPVLLLSGILNSIVLLIVGGCGVATDKTLSLEkaivgmVYVFMVVFNFGWGPTVWVVTSEISTGKNRGRLMALSTS 411
                 7776665.6667788888*****************************5555555555454344443444444569********************9986 PP

       MFS_1 344 ag 345
                  +
  KKY18908.1 412 SN 413
                 55 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   2.1e-12   5.3e-09      42     117 .]     583     663 ..     549     663 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 2.1e-12
                     TEEEEEEEEEEEET...TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHHHHHH.TTE CS
  Acetyltransf_1  42 geliGfisllkipd...ekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaairlYek.lGF 117
                     ++++G++ ++   d     +++++i s+ V +++r+ G++ +L++   + + e   ++++ l+v+ +n+aa +lY+  lGF
      KKY18908.1 583 PKVVGYVLAKLEEDipaGQPQHGHITSISVLRTHRRLGIAEKLMRLSSRAMAEVyAAEYVSLHVRISNKAALGLYKDtLGF 663
                     789****9999999***889*****************************99999888999***************988999 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.1     6e-10   1.5e-06      18      81 ..     601     667 ..     599     672 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 6e-10
                 E-TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHH..S-S-EEEEEETT-HHHHHHHH.HHT-EEEE CS
        FR47  18 rkdggelgalqvlpehrrrGlgsrlvkalakeiae..rgktvllvvvasNtpsirlye.klGfekie 81 
                 +++ g + ++ vl +hrr G + +l +  ++++ae  + + v+l+v++sN+++  ly+  lGfe+ +
  KKY18908.1 601 QPQHGHITSISVLRTHRRLGIAEKLMRLSSRAMAEvyAAEYVSLHVRISNKAALGLYKdTLGFEVEK 667
                 5789******************************9999999****************8469**9874 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.5e-08   6.3e-05      50     126 ..     603     685 ..     580     686 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.5e-08
  Acetyltransf_10  50 dgshisllfVdpeyrgqGigkaLleaveeeaekdgikl..eltvnasp.yavpfYe.klGFkav..geeqeenGirfvpMeke 126
                      +++hi+ + V + +r+ Gi+++L+    +++ +   ++  +l+v+ s+ +a ++Y+ +lGF++   ++  +++G   ++M+++
       KKY18908.1 603 QHGHITSISVLRTHRRLGIAEKLMRLSSRAMAEVYAAEyvSLHVRISNkAALGLYKdTLGFEVEktEKGYYADGEDALQMRWD 685
                      667**********************999996566555569*****9999******8569***996677789999999999987 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.2e-07    0.0003      13      75 ..     584     664 ..     562     665 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.2e-07
                     EEEEEEEEEEES.........TCTEEEEE-GGGTTSSHHHHHHHH.......TTSEEE....EE.EEEETHHHHHHHHH.HTTEE CS
  Acetyltransf_7  13 kivGfialslld.........aeitrlaVdpeyrgkGiGraLlea.......aekgii....le.qlelnaekaikfYe.klGFe 75 
                     k+vG++ ++l++         ++it + V+  +r+ Gi+ +L+++       +         ++ +++ ++++a+++Y+  lGFe
      KKY18908.1 584 KVVGYVLAKLEEdipagqpqhGHITSISVLRTHRRLGIAEKLMRLssramaeV----YaaeyVSlHVRISNKAALGLYKdTLGFE 664
                     67888888888888988887778888******************855443220....1222222334446668999**6257776 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00013      0.33      73     104 ..     604     635 ..     587     645 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
                     EEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHH CS
  Acetyltransf_9  73 aagvtgVavapehrgrgvlskLlaraleemre 104
                      + +t+++v  +hr+ g+++kL++ + + m+e
      KKY18908.1 604 HGHITSISVLRTHRRLGIAEKLMRLSSRAMAE 635
                     578********************988888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.48
# Mc/sec: 4654.32
//
Query:       KKY18909.1  [L=548]
Description: putative disulfide isomerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-60  201.5   0.0      3e-29  101.0   0.0    2.3  2  Thioredoxin    Thioredoxin
    2.1e-43  147.9   3.5    5.7e-39  133.4   0.9    2.3  2  DUF1264        Protein of unknown function (DUF1264)
    8.4e-23   81.1   2.5    2.4e-22   79.6   1.2    2.4  2  ERp29          Endoplasmic reticulum protein ERp29, C-termina
    4.4e-16   59.1   0.0    7.1e-08   32.1   0.0    2.2  2  OST3_OST6      OST3 / OST6 family, transporter family
    6.4e-15   55.5   0.2    4.6e-07   30.3   0.0    3.1  2  Thioredoxin_2  Thioredoxin-like domain
    1.3e-08   35.1   0.0     0.0014   18.9   0.0    3.1  2  Thioredoxin_8  Thioredoxin-like
    3.5e-08   33.3   0.1    0.00015   21.6   0.0    3.1  3  Thioredoxin_9  Thioredoxin
    5.5e-07   29.7   0.0      0.031   14.2   0.0    2.6  2  Thioredoxin_6  Thioredoxin-like domain
    1.3e-06   28.5   0.0      0.005   17.0   0.0    2.6  2  Thioredoxin_7  Thioredoxin-like
    1.9e-06   27.8   1.2      0.011   15.7   0.1    2.8  3  AhpC-TSA       AhpC/TSA family
    6.1e-06   26.4   0.2    0.00062   19.9   0.1    2.7  3  ERp29_N        ERp29, N-terminal domain
    0.00011   22.1   0.0      0.095   12.5   0.0    2.5  2  TraF           F plasmid transfer operon protein
    0.00026   21.0   0.0       0.24   11.5   0.0    3.0  3  Thioredoxin_3  Thioredoxin domain
      0.001   19.3   0.0        2.5    8.4   0.0    2.9  2  Glutaredoxin   Glutaredoxin
     0.0085   16.1   0.0        2.7    8.0   0.0    2.8  2  HyaE           Hydrogenase-1 expression protein HyaE
  ------ inclusion threshold ------
      0.012   15.8   1.0        1.4    9.1   0.0    3.3  4  Thioredoxin_4  Thioredoxin
      0.076   13.4   0.0       0.84   10.1   0.0    2.3  2  DUF836         Glutaredoxin-like domain (DUF836)


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.0   2.8e-32     3e-29       2     102 ..     203     307 ..     202     308 .. 0.95
   2 !   98.2   0.0   2.1e-31   2.2e-28       2     102 ..     324     428 ..     323     429 .. 0.93

  Alignments for each domain:
  == domain 1  score: 101.0 bits;  conditional E-value: 2.8e-32
                  EEESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT...TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTE.EEEEEESS-HHH CS
  Thioredoxin   2 vlvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd...kvklakvdvdenedlakkyevegiPtlklfkngk.evkkyegareke 95 
                  v+ lt +nF++ v k+ ++ lveF+ApwCghCk+laP +e+la+ lk+   k+++akvd+d++++l kk++v+g+Ptlk f     ++ +y+ +r+ e
   KKY18909.1 203 VIDLTPDNFDSVVLKSGTPSLVEFFAPWCGHCKNLAPIYEELATSLKHksdKIQIAKVDADNHKELGKKFGVQGFPTLKYFDGKSdKPTEYSSGRDLE 300
                  67899*****************************************99999***************************99986556************ PP

                  HHHHHHH CS
  Thioredoxin  96 klaaflk 102
                  +l++f++
   KKY18909.1 301 SLQKFIA 307
                  ****996 PP

  == domain 2  score: 98.2 bits;  conditional E-value: 2.1e-31
                  EEESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT..TSEEEEEETTTS..HHHHHHTT-SSSSEEEEEETTE.EEEEEESS-HH CS
  Thioredoxin   2 vlvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd..kvklakvdvden..edlakkyevegiPtlklfkngk.evkkyegarek 94 
                  v  lt+++F+e+v k +++vlv F+ApwCghCk+laP++ek+a+++++  +v +akvd++++  + +a+  +v+++Pt+k+f++g  e++ y+g r++
   KKY18909.1 324 VEMLTDSTFKEKVGK-DQDVLVAFTAPWCGHCKNLAPVWEKVASDFSAdvDVLIAKVDAESEnsKATAQAQGVSSYPTIKFFPKGStEPEPYSGPRTE 420
                  6789***********.*******************************99999******9876115678899**************999********** PP

                  HHHHHHHH CS
  Thioredoxin  95 eklaaflk 102
                  ++l++f++
   KKY18909.1 421 QALVDFIN 428
                  *****996 PP

>> DUF1264  Protein of unknown function (DUF1264)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1     3e-06    0.0032       1      23 [.      27      49 ..      27      50 .. 0.94
   2 !  133.4   0.9   5.4e-42   5.7e-39      63     170 ..      48     164 ..      46     165 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3e-06
     DUF1264  1 fkpvkkikahlnafhvyaddpkr 23
                fkpv++i+ahlnafhvya+dp+r
  KKY18909.1 27 FKPVQQICAHLNAFHVYAEDPSR 49
                79******************987 PP

  == domain 2  score: 133.4 bits;  conditional E-value: 5.4e-42
     DUF1264  63 klfetLpeeEkklWHsHeyEvksGllvlpakag..vpeaaee....aeleevvklYGKtyhlWqvdrgdklPlGapqLmmsftedgqvk...lklvker 152
                 + fetLpeeE+klWHsH++EvksG+lv+p++++   p+aa+e    +e+e+v+ lYGKtyh+Wqvdrgd +P+G+p+Lm sfte+g+v+    +  ++r
  KKY18909.1  48 SRFETLPEEERKLWHSHVFEVKSGMLVMPQPSTsiTPTAAWEaaetKEMEQVIGLYGKTYHFWQVDRGDVVPFGHPSLMLSFTEEGKVNeeaRRKWAAR 146
                 68***************************99655689999999999***************************************9999443367889* PP

     DUF1264 153 derlgvdteekrekRkdi 170
                 d++++v++e+k+++R++i
  KKY18909.1 147 DQNYKVSSEHKAQERAYI 164
                 ***************987 PP

>> ERp29  Endoplasmic reticulum protein ERp29, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       3.5   3.7e+03      11      48 ..     362     399 ..     352     403 .. 0.69
   2 !   79.6   1.2   2.3e-25   2.4e-22       1      96 []     446     536 ..     446     536 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 3.5
       ERp29  11 aefvaaakaereelleeakkaaeklksekekkaaeyYv 48 
                 +++++  +a+ + l++++ ++ e+ k++++++ ++ Y 
  KKY18909.1 362 EKVASDFSADVDVLIAKVDAESENSKATAQAQGVSSYP 399
                 55555556777888899999999888778777777775 PP

  == domain 2  score: 79.6 bits;  conditional E-value: 2.3e-25
       ERp29   1 GrieeldelaaefvaaakaereelleeakkaaeklksekekkaaeyYvkvmekiaekgeeyvekElkRLekllk.kgklaaekkdelkkrlNILsaF 96 
                 G+ie+ld++++++v +  ++ +++ +e+kka e  k    +k+aeyY+kv++k+ +++ +y++kE++RL++llk ++ la+ek+d+l+kr+NIL++F
  KKY18909.1 446 GTIEALDSIVKQYVVSP-DTLDKITAEVKKATEGAK----DKYAEYYLKVLDKLGKSE-GYAQKESARLAGLLKkSDGLAKEKVDDLTKRSNILKNF 536
                 9**************99.999999999999999999....******************.**************95569*****************99 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   6.8e-11   7.1e-08      13     141 ..     203     314 ..     196     322 .. 0.80
   2 !   25.0   0.0     1e-08   1.1e-05      15     133 ..     326     427 ..     316     437 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 6.8e-11
   OST3_OST6  13 viklndenykellkgprdysvvvllTatspqfkCelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkgpkes 111
                 vi+l+ +n+++++ ++   s+v ++        C  C++++p +e +a s +++    s+k+  akvd d+ k++ +k+g++  P l +f  k+     
  KKY18909.1 203 VIDLTPDNFDSVVLKSGTPSLVEFFAP-----WCGHCKNLAPIYEELATSLKHK----SDKIQIAKVDADNHKELGKKFGVQGFPTLKYFDGKS----- 287
                 555666666666555555555555533.....3*******************99....69******************************9933..... PP

   OST3_OST6 112 kkkdtydfsrggfdaealakfisertgvki 141
                 +k+ +y     g d e+l kfi+++tgvk 
  KKY18909.1 288 DKPTEYSS---GRDLESLQKFIADKTGVKA 314
                 36777774...789************9775 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 1e-08
   OST3_OST6  15 klndenykellkgprdysvvvllTatspqfkCelCrefepefelvakswrkdekskskklfFakvdfde..gkdvFqklglnsaPhlllfppkkgpkes 111
                  l+d+++ke +   +d  v+v +Ta      C  C++++p +e+va+ + +d      +++ akvd +   +k + q  g++s P + +fp  +  +  
  KKY18909.1 326 MLTDSTFKEKV--GKDQDVLVAFTAP----WCGHCKNLAPVWEKVASDFSAD-----VDVLIAKVDAESenSKATAQAQGVSSYPTIKFFPKGS--T-- 409
                 58889999988..48999*******9....7*********************.....59********55559999999************9933..3.. PP

   OST3_OST6 112 kkkdtydfsrggfdaealakfi 133
                  +++ y  +r   + +al++fi
  KKY18909.1 410 -EPEPYSGPR---TEQALVDFI 427
                 .455555443...333444555 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   4.4e-10   4.6e-07       3      92 ..     217     289 ..     215     305 .. 0.75
   2 !   21.8   0.0   1.9e-07    0.0002       4      92 ..     338     410 ..     335     424 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 4.4e-10
  Thioredoxin_2   3 gngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgk.ei 92 
                    ++g p lv f +p+C+ Ck l    +el              s + k+ +i+ ak  +      + ++el++k+gv+g+Pt+ ++dgk  +
     KKY18909.1 217 KSGTPSLVEFFAPWCGHCKNLAPIYEEL------------ATSLKHKSDKIQIAKVDA------DNHKELGKKFGVQGFPTLKYFDGKsDK 289
                    679999****************999999............222333444444444443......44679*******************643 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 1.9e-07
  Thioredoxin_2   4 ngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgk.ei 92 
                    + + vlv ft+p+C+ Ck l  + +++    +      ++++++  +++++ + e +         ++ a++ gv++ Pti f+++  ++
     KKY18909.1 338 KDQDVLVAFTAPWCGHCKNLAPVWEKV---ASD-----FSADVDVLIAKVDAESENS---------KATAQAQGVSSYPTIKFFPKGsTE 410
                    67889*****************88888...444.....8999999999999999886.........999***********9977765454 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.3e-06    0.0014       4      52 ..     222     271 ..     219     289 .. 0.85
   2 !   12.3   0.0   0.00015      0.16       4      57 ..     342     393 ..     339     405 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.3e-06
                    EEEEE--SSSHHHHHHHHHHHHHHHHHHH.TTSEEEEEEE-SS-HHHHHH CS
  Thioredoxin_8   4 vlLyfgaswcppckaftpklkelyeklkk.kkkveivyvsldkkeeefek 52 
                     l+ f+a wc +ck+  p   el ++lk+ ++k++i  v  d+ +e  +k
     KKY18909.1 222 SLVEFFAPWCGHCKNLAPIYEELATSLKHkSDKIQIAKVDADNHKELGKK 271
                    5789************************88************97654444 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00015
                    EEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGGGS CS
  Thioredoxin_8   4 vlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefekylkkn 57 
                    vl+ f a wc +ck+  p   ++ ++++   +v ++  ++d + e+ +++ + +
     KKY18909.1 342 VLVAFTAPWCGHCKNLAPVWEKVASDFS--ADVDVLIAKVDAESENSKATAQAQ 393
                    8999***********************9..999999999999999999988877 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2       2.4   2.5e+03      10      36 ..     135     160 ..     126     168 .. 0.56
   2 !    7.7   0.0    0.0026       2.7      48      90 ..     226     272 ..     202     290 .. 0.80
   3 !   21.6   0.0   1.4e-07   0.00015       6     106 ..     304     406 ..     300     423 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.4
                    TS-HHHHHHHHHHHHHHHHH---HHHH CS
  Thioredoxin_9  10 emtkenkermlrvykkvelseeteeki 36 
                     +++  ++++ + ++++++s+e ++++
     KKY18909.1 135 VNEE-ARRKWAARDQNYKVSSEHKAQE 160
                    3444.5666666666666666666544 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0026
                    E--TT-HHHHHHHHHHHHHH....HH-TTEEEEEE-HHHHHHHTTTT CS
  Thioredoxin_9  48 ltedwCgDaavnvPvlakia....elnpnievkillrdenlelmdqy 90 
                    + ++wCg + +  P+ +++a      +++i++  +  d+++el +++
     KKY18909.1 226 FFAPWCGHCKNLAPIYEELAtslkHKSDKIQIAKVDADNHKELGKKF 272
                    6789************9998433346789999999999999988777 PP

  == domain 3  score: 21.6 bits;  conditional E-value: 1.4e-07
                    HHHHTS-HHHHHHHHHHHHHHHHH---HHHHHT--S-EEEEE.E--TT-HHHHHHHHHHHHHH.HH-TTEEEEEE-HHHHHHHTTTTTT.-SS--S CS
  Thioredoxin_9   6 eyleemtkenkermlrvykkvelseeteekiksiekklkilv.ltedwCgDaavnvPvlakia.elnpnievkillrdenlelmdqylt.ngarai 98 
                    ++++++t  + + +++   +ve+ ++   k+ ++ k++++lv +t++wCg + +  Pv +k+a + + +++v i   d++ e  +   + +g  + 
     KKY18909.1 304 KFIADKTGVKAKGVKAAPSEVEMLTDSTFKE-KVGKDQDVLVaFTAPWCGHCKNLAPVWEKVAsDFSADVDVLIAKVDAESENSKATAQaQGVSSY 398
                    5666666666666666666777777666655.555666555439******************9445667777777777777777777777899999 PP

                    SEEEEE-T CS
  Thioredoxin_9  99 Ptliilde 106
                    Pt+ ++ +
     KKY18909.1 399 PTIKFFPK 406
                    98877655 PP

>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.9e-05     0.031      29      74 ..     264     309 ..     206     311 .. 0.79
   2 !   12.7   0.0   8.3e-05     0.088       9      72 ..     358     428 ..     354     431 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.9e-05
                    --HHHHHHTT--S.SEEEEEETTTTEEEEEETHT--HHHHHHHHHHH CS
  Thioredoxin_6  29 kskevadklgvke.pavllfrkfdeekvkydgekitvddlkkfiekn 74 
                    ++ke+ +k+gv++ p++++f ++++++++y+    + ++l+kfi+++
     KKY18909.1 264 NHKELGKKFGVQGfPTLKYFDGKSDKPTEYSSG-RDLESLQKFIADK 309
                    34567888***999****************998.89********997 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 8.3e-05
                    HHHHHHHTTT-T.TSEEEEE--HH.......HHHHTT--S.SEEEEEETTTTEEEEEETHT--HHHHHHHHH CS
  Thioredoxin_6   9 seiFekvakelkgdvrfgvtkske.......vadklgvke.pavllfrkfdeekvkydgekitvddlkkfie 72 
                    + + ekva++++ dv++ + k ++        a++ gv++ p++++f k ++e++ y+g   t + l++fi+
     KKY18909.1 358 APVWEKVASDFSADVDVLIAKVDAesenskaTAQAQGVSSyPTIKFFPKGSTEPEPYSGP-RTEQALVDFIN 428
                    556799***********999866666677767777***999******************7.8********97 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0016       1.7      14      64 ..     216     266 ..     213     285 .. 0.64
   2 !   17.0   0.0   4.8e-06     0.005      17      82 ..     339     405 ..     329     406 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0016
                    HHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S- CS
  Thioredoxin_7  14 aergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterd 64 
                     ++g p lv f a wc++C+ l+   ++  +  +  ++k+   +vd ++ +
     KKY18909.1 216 LKSGTPSLVEFFAPWCGHCKNLAPIYEELATSLKHKSDKIQIAKVDADNHK 266
                    5789999*************9865544444444424466666666655555 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 4.8e-06
                    T--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG....-TT---...SSEEEEE- CS
  Thioredoxin_7  17 gkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdani...leldeqg...vPvvafld 82 
                     ++vlv f+a wc++C+ l+  ++++  v+  ++ ++ +l + v+ +++n     +   qg   +P++ f+ 
     KKY18909.1 339 DQDVLVAFTAPWCGHCKNLAP-VWEK--VASDFSADVDVLIAKVDAESENSkatAQA--QGvssYPTIKFFP 405
                    689**************9975.5665..33446666666666665555544222232..3344599998885 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00054      0.57      24      73 ..     218     268 ..     194     312 .. 0.78
   2 !   15.7   0.1     1e-05     0.011      24      81 ..     338     394 ..     310     404 .. 0.77
   3 ?   -2.8   0.0       5.2   5.5e+03      61      79 ..     456     474 ..     450     483 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00054
                 TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCT..TEEEEEEESSSCHHH CS
    AhpC-TSA  24 kgkpvvlffypkdwcpvCttelpalaklyeefker..gvevigvsvdspesh 73 
                 +g p ++ f++  wc +C++ +p +++l+  +k++  ++++  v +d+++++
  KKY18909.1 218 SGTPSLVEFFAP-WCGHCKNLAPIYEELATSLKHKsdKIQIAKVDADNHKEL 268
                 689999******.****************99985422566666666665544 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1e-05
                 TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCH.HHHHHHHH-H CS
    AhpC-TSA  24 kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspe.shkkfiekes 81 
                 k++ v++ f++  wc +C++ +p  +k++ +f  ++v+v++  vd +  ++k+++++++
  KKY18909.1 338 KDQDVLVAFTAP-WCGHCKNLAPVWEKVASDFS-ADVDVLIAKVDAESeNSKATAQAQG 394
                 667788888888.********************.7999999999877658999998887 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 5.2
                 EEEEEESSSCHHHHHHHHH CS
    AhpC-TSA  61 evigvsvdspeshkkfiek 79 
                 + + vs+d+++++ + ++k
  KKY18909.1 456 KQYVVSPDTLDKITAEVKK 474
                 6688999999988887766 PP

>> ERp29_N  ERp29, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       5.3   5.6e+03      69     100 ..     135     166 ..     130     182 .. 0.70
   2 !   19.9   0.1   5.9e-07   0.00062       5     121 ..     202     312 ..     198     315 .. 0.78
   3 ?    3.4   0.0     0.077        81      10     117 ..     328     429 ..     323     435 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.3
                 TTHHHHHHTT--TTC-SEEEEESSSTTSEEE- CS
     ERp29_N  69 enkelgerykvdkesyPviflfkGdaeepvdl 100
                  n e  ++++  +++y v    k +   ++  
  KKY18909.1 135 VNEEARRKWAARDQNYKVSSEHKAQERAYIAE 166
                 57777788888888888877777766666654 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 5.9e-07
                 T-EEE-TTTHHHHHTTS.SEEEEEEEESS--SHHHHH..HHHHHHHHHHH-SSEEEEEEEEBSSSS-TTHHHHHHTT--TTC-SEEEEESSSTTSEEE- CS
     ERp29_N   5 Gavdldevtfekvvekf.kyslvkfdtayPyGekhea..ftalakeaskateellvaevGikdyGekenkelgerykvdkesyPviflfkGdaeepvdl 100
                  ++dl    f+ vv k+   slv f   +    k+ a  +++la + ++ ++++ +a+v        + kelg+++ v+   +P+++ f G++++p ++
  KKY18909.1 202 DVIDLTPDNFDSVVLKSgTPSLVEFFAPWCGHCKNLApiYEELATSLKHKSDKIQIAKVDAD-----NHKELGKKFGVQ--GFPTLKYFDGKSDKPTEY 293
                 56788888888888777345888888777655554333388999999999999999999643.....5689*****996..69**************** PP

                 -TTS---HHHHHHHHHHHSS- CS
     ERp29_N 101 padgevtvdalkkflkaqtal 121
                  +     +++l+kf+  +t++
  KKY18909.1 294 SS--GRDLESLQKFIADKTGV 312
                 44..45689*******99987 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.077
                 -TTTHHHHHTTSSEEEEEEEESS--SHHHHH..HHHHHHHHHHH-SSEEEEEEEEBSSSS-TTHHHHHHTT--TTC-SEEEEESSSTTSEEE--TTS-- CS
     ERp29_N  10 devtfekvvekfkyslvkfdtayPyGekhea..ftalakeaskateellvaevGikdyGekenkelgerykvdkesyPviflfkGdaeepvdlpadgev 106
                  ++tf+  v k + +lv f   +    k+ a  ++++a +  +a  ++l+a+v      e en + + + +    syP+i++f   ++ep  +   g  
  KKY18909.1 328 TDSTFKEKVGKDQDVLVAFTAPWCGHCKNLApvWEKVA-SDFSADVDVLIAKVDA----ESENSKATAQAQ-GVSSYPTIKFFPKGSTEPEPY--SGPR 418
                 56788888888888888887766544443322255666.5666777889998864....555655554433.44679*****98556666555..5666 PP

                 -HHHHHHHHHH CS
     ERp29_N 107 tvdalkkflka 117
                 t +al  f+++
  KKY18909.1 419 TEQALVDFING 429
                 66666666665 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0     9e-05     0.095     133     206 ..     223     290 ..     218     297 .. 0.82
   2 !    6.9   0.0    0.0048       5.1     132     202 ..     342     407 ..     329     415 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9e-05
        TraF 133 LlfFyrgkcpyceaqapilqafadkyglevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlvdpksqkv 206
                 L+ F+++ c+ c+ +api++++a + + +   +++ +   ++      +k+  +++gv+ +P+l  +d ks+k 
  KKY18909.1 223 LVEFFAPWCGHCKNLAPIYEELATSLKHKSDKIQIAKVDADN------HKELGKKFGVQGFPTLKYFDGKSDKP 290
                 6779*******************9998888888777664433......445667**********9999998775 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0048
        TraF 132 gLlfFyrgkcpyceaqapilqafadky..glevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlvdpk 202
                  L+ F ++ c+ c+ +ap+ +++a ++    +v++ +vd +      n   +k  a++ gv++ P++ ++ + 
  KKY18909.1 342 VLVAFTAPWCGHCKNLAPVWEKVASDFsaDVDVLIAKVDAESE----N---SKATAQAQGVSSYPTIKFFPKG 407
                 6899********************9993344455555665533....3...5678889999999998776655 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00023      0.24       6      58 ..     227     286 ..     223     290 .. 0.80
   2 ?   -3.0   0.0       7.5   7.9e+03      16      36 ..     299     319 ..     292     327 .. 0.70
   3 ?    6.0   0.0     0.012        13       7      52 ..     348     400 ..     340     403 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00023
                    ESSSSTTCHHHHHHHHHHCHCCTCEC...EEECC..TTHHHH.HHCT-SSSSEE.ECTTC CS
  Thioredoxin_3   6 lgpgCakCpklekavkeaaaekgika...evekv..tdfeei.ekygVmsvPal.vidgk 58 
                    + p C +C++l+ + +e+a++++ k    ++ kv   + +e+ +k+gV+  P+l + dgk
     KKY18909.1 227 FAPWCGHCKNLAPIYEELATSLKHKSdkiQIAKVdaDNHKELgKKFGVQGFPTLkYFDGK 286
                    5678*****999999999988865554556777663677788************999998 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7.5
                    HHHHHHHHCHCCTCECEEECC CS
  Thioredoxin_3  16 lekavkeaaaekgikaevekv 36 
                    le++ k +a++ g+ka+ +k+
     KKY18909.1 299 LESLQKFIADKTGVKAKGVKA 319
                    666677777788888876655 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.012
                    SSSSTTCHHHHHHHHHHCHCCTCEC.....EEECCTTHHHH..HHCT-SSSSE CS
  Thioredoxin_3   7 gpgCakCpklekavkeaaaekgika.....evekvtdfeei..ekygVmsvPa 52 
                     p C +C++l+ +++++a +   ++     +v+  +++++   +  gV s P+
     KKY18909.1 348 APWCGHCKNLAPVWEKVASDFSADVdvliaKVDAESENSKAtaQAQGVSSYPT 400
                    455***************99865553355555555444444455666666665 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0043       4.5       6      57 ..     228     285 ..     222     287 .. 0.63
   2 !    8.4   0.0    0.0023       2.5       2      53 ..     344     401 ..     343     404 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0043
                   STSSHHHHHHHHHHHHTT....GGEEEEEGCCSH.HHHHHHHHHHTSSSSSEEE.ETT CS
  Glutaredoxin   6 kptCpyCkkakrlLkelg....vkfeeidvdkde.eireelkelsgvrtvPqvf.idg 57 
                    p+C++Ck+   + +el      k + i++ k + +  +el ++ gv+ +P++  +dg
    KKY18909.1 228 APWCGHCKNLAPIYEELAtslkHKSDKIQIAKVDaDNHKELGKKFGVQGFPTLKyFDG 285
                   49*******9877655553322445566666543345566666669999999853465 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0023
                   EEEESTSSHHHHHHHHHHHHTTGGE.EEEEGCCSH.....HHHHHHHHHHTSSSSSEE CS
  Glutaredoxin   2 vlftkptCpyCkkakrlLkelgvkf.eeidvdkde.....eireelkelsgvrtvPqv 53 
                   v ft p+C++Ck+   + ++   +f + +dv+  +     e  ++  +  gv++ P++
    KKY18909.1 344 VAFTAPWCGHCKNLAPVWEKVASDFsADVDVLIAKvdaesENSKATAQAQGVSSYPTI 401
                   679**********988887777555455555544321011444444444488888877 PP

>> HyaE  Hydrogenase-1 expression protein HyaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0026       2.7      49      92 ..     240     285 ..     195     288 .. 0.78
   2 ?    5.0   0.0     0.022        23      63      94 ..     377     408 ..     354     411 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0026
                 HHHHHHCT-TTS-EEEEEE..THHHHHHHHHCCT-TSSSEEEEEET CS
        HyaE  49 vlpEllkaFpnalraavva..dreqeealaerfgvlktPsllflrd 92 
                 +  El    ++ ++ + +a  d ++ ++l+++fgv+ +P+l ++ +
  KKY18909.1 240 IYEELATSLKHKSDKIQIAkvDADNHKELGKKFGVQGFPTLKYFDG 285
                 56677777777766655554789999**************988865 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.022
                 EEEEETHHHHHHHHHCCT-TSSSEEEEEETTE CS
        HyaE  63 aavvadreqeealaerfgvlktPsllflrdge 94 
                 a v a++e+++a a+  gv+ +P++ f+ +g+
  KKY18909.1 377 AKVDAESENSKATAQAQGVSSYPTIKFFPKGS 408
                 3344589999******************9986 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.085        90      16      39 ..     222     245 ..     217     267 .. 0.79
   2 ?   -1.2   0.0         2   2.1e+03     128     150 ..     263     287 ..     241     308 .. 0.63
   3 ?    9.1   0.0    0.0013       1.4      13      71 ..     339     394 ..     336     411 .. 0.79
   4 ?   -2.7   0.0       5.3   5.6e+03      80     103 ..     487     506 ..     452     537 .. 0.46

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.085
                    EEEEEE-TT-HHHHHHHHHHHHHH CS
  Thioredoxin_4  16 tvieyedlrCphCakfeeevekll 39 
                    +++e+    C hC++++  +e+l 
     KKY18909.1 222 SLVEFFAPWCGHCKNLAPIYEELA 245
                    689************988777654 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2
                    HHHHHH.HHHT--SS-EEEE.TTEE CS
  Thioredoxin_4 128 aeskea.kkagiestPtfii.ngek 150
                     + ke+ kk g+++ Pt+   +g+ 
     KKY18909.1 263 DNHKELgKKFGVQGFPTLKYfDGKS 287
                    4456666999999999997535544 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0013
                    -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHHHTTSEEEEEEE-..---S.TTTHHHHHHH CS
  Thioredoxin_4  13 ApvtvieyedlrCphCakfeeeveklleeyidtGkvkfiirdfpldkek.eslkaamaar 71 
                     + ++++++   C hC++++   ek+ +++  + +v + i ++  d e+ +s+  a+a +
     KKY18909.1 339 DQDVLVAFTAPWCGHCKNLAPVWEKVASDF--SADVDVLIAKV--DAESeNSKATAQAQG 394
                    56799************************9..99999999999..433335776666654 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 5.3
                    HHHHHHHHHHTHHHHTTS-HHHHH CS
  Thioredoxin_4  80 aflaikallysqqeewaeslkela 103
                    + +++++l +s+ ++     ke a
     KKY18909.1 487 YLKVLDKLGKSEGYAQ----KESA 506
                    2223333333332222....3333 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0008      0.84       8      49 ..     229     275 ..     223     306 .. 0.73
   2 ?    0.5   0.0      0.78   8.2e+02       5      32 ..     346     373 ..     342     392 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0008
                 TT-HHHH...HHHHHHHH..HCCCTTEEEEEEETTT-CCCHCCCCTT CS
      DUF836   8 pgChlCe...qakekLke..lkleegleleviDIakdeeleakYgle 49 
                 p C+ C+    ++e L+    ++ +++++ ++D ++++el++k+g++
  KKY18909.1 229 PWCGHCKnlaPIYEELATslKHKSDKIQIAKVDADNHKELGKKFGVQ 275
                 77999993332344555443355555******************986 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.78
                 EE-TT-HHHHHHHHHHHHHCCCTTEEEE CS
      DUF836   5 yskpgChlCeqakekLkelkleeglele 32 
                 ++ p C+ C+++  + ++++ + + +++
  KKY18909.1 346 FTAPWCGHCKNLAPVWEKVASDFSADVD 373
                 78899******99999987766664443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3756.65
//
Query:       KKY18910.1  [L=849]
Description: hypothetical protein UCRPC4_g04705 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (849 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.50
# Mc/sec: 5066.60
//
Query:       KKY18911.1  [L=860]
Description: putative rrna methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-79  265.1  17.3    4.2e-79  265.1  17.3    2.9  3  Spb1_C           Spb1 C-terminal domain
    6.2e-56  189.3   0.0    1.1e-55  188.5   0.0    1.4  1  FtsJ             FtsJ-like methyltransferase
      2e-53  180.6  10.5      2e-53  180.6  10.5    4.6  5  DUF3381          Domain of unknown function (DUF3381)
  ------ inclusion threshold ------
      0.033   13.8   1.7      0.043   13.4   0.0    1.9  2  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F


Domain annotation for each model (and alignments):
>> Spb1_C  Spb1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   2.9       1.3   5.9e+03     159     166 ..     379     386 ..     339     413 .. 0.49
   2 ?   -7.5   6.1         4   1.8e+04     124     124 ..     496     496 ..     439     550 .. 0.63
   3 !  265.1  17.3   9.4e-83   4.2e-79       3     211 .]     636     851 ..     591     851 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.3
      Spb1_C 159 kaakkkkk 166
                 + ++kkkk
  KKY18911.1 379 QESSKKKK 386
                 11111111 PP

  == domain 2  score: -7.5 bits;  conditional E-value: 4
      Spb1_C 124 a 124
                  
  KKY18911.1 496 R 496
                 1 PP

  == domain 3  score: 265.1 bits;  conditional E-value: 9.4e-83
      Spb1_C   3 eedddfevvpaeekeekdsddeeeeede...........kidiltaealalaqqlatgkktkedlidegfnryafn.dkdgLPeWFldDEkkhskpekp 89 
                 ++++++e+vp+ ++ e+ ++++     +           +idi+taea++la+++a+g kt++dl d+ fn+y+f+ d +gLPeWFldDE+khs+p++p
  KKY18911.1 636 TNNNKIEIVPTAAEPETWDNSK-----SrsdprtpsgalDIDIITAEAMTLAREIASGVKTTTDLEDDNFNKYTFRgDLSGLPEWFLDDETKHSQPNRP 729
                 4556666666665555544433.....03344699*****************************************999******************** PP

      Spb1_C  90 itkeavaaikeklralnarpiKKVaEAkaRKklkaakkleklkkkaeliaededlsekeKakqieklmkkaakkkkkkkvkvvvakkankglsgrpkgv 188
                 i+ +a+ a++eklralnarpiKKV+EAk+RKk+kaa+klekl++k++l+a+de++se++Ka++i+klm++aakkk+k+kvk+vvak++n+g+sgrp+gv
  KKY18911.1 730 ISAAAAGALREKLRALNARPIKKVLEAKGRKKFKAAQKLEKLRRKSALLADDEGISERDKANSIAKLMSRAAKKKPKEKVKLVVAKGGNRGISGRPRGV 828
                 *************************************************************************************************** PP

      Spb1_C 189 kgkykmVDkrmKkdlRalkriak 211
                 kgkyk+VDkr+Kkd+Ra+kr+ak
  KKY18911.1 829 KGKYKIVDKRLKKDVRAEKRVAK 851
                 ********************997 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.5   0.0   2.5e-59   1.1e-55       1     177 []      33     209 ..      33     209 .. 0.99

  Alignments for each domain:
  == domain 1  score: 188.5 bits;  conditional E-value: 2.5e-59
                 CCCCHHHHHHHHHHHHT-S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHHTTEEEECS-CCCSSHHHHHCHCHHHSSEEEEEE--S-SS CS
        FtsJ   1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealserkvdlvvsDgapdv 99 
                 yr+R+a+KL+++++k++++++ k  +Dl+aaPG+w+qv+++ + a++ +++vDl p++p+p+  t+q dit+ + + +++ +l++ k+d v++Dgap+v
  KKY18911.1  33 YRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWTQVAAETMPAGALIIGVDLAPIKPIPRAITFQSDITTDKCRATLRGHLKGWKADTVLHDGAPNV 131
                 9****************99************************99****************************************************** PP

                 -CHHHHHHHHHCCCCHHHHCCHCCCCECCCEEEECCCHCCCHHHHHHHHHCCEEEEEEEE-SS--CCG-EEEEEEEEC CS
        FtsJ 100 sgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvcrgf 177
                    +++d++ q++L+l +l+la++ l++ggtfv+k+fr+++ +all  +k++F +v+ +kP+ssr+ s+e+f+vcrg+
  KKY18911.1 132 GTAWVQDAFSQAELVLMSLKLAVDFLAEGGTFVTKVFRSKDYNALLWVFKQLFTSVEATKPPSSRNVSAEIFVVCRGY 209
                 ****************************************************************************96 PP

>> DUF3381  Domain of unknown function (DUF3381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.6  10.5   4.5e-57     2e-53       1     165 []     243     401 ..     243     401 .. 0.91
   2 ?    0.6  10.9     0.095   4.3e+02      91     162 ..     436     503 ..     425     533 .. 0.57
   3 ?   -3.5   2.9       1.8   7.9e+03     105     136 ..     598     619 ..     570     643 .. 0.42
   4 ?   -3.7   5.2       2.1   9.2e+03     101     153 ..     754     809 ..     738     816 .. 0.44
   5 ?   -4.9   3.2         4   1.8e+04     145     161 ..     839     855 ..     830     859 .. 0.46

  Alignments for each domain:
  == domain 1  score: 180.6 bits;  conditional E-value: 4.5e-57
                 XXXXXXXXXXXXXXXXXX--EEEHHHHHT-----HHHHH-SEEE--S....HHHHH.HHSSSSS-SSHHHHHH-SSS--HHHHHHHHHHHHHHHHH-XX CS
     DUF3381   1 pekkkrkreGYeegdytlykelsvseFiksedpielLgkaneitfdk....eelkekilkhpktteEikelckDLkVLGkkdlkkLLkWrkklrkelgl 95 
                 pekkkrkreGYeegdyt++ke++v+eFi+++dpi++Lg++n+++fd+    + + ++++++p+tt Ei+++c+DLk+LG+k++++LL+Wr+k+r+ +gl
  KKY18911.1 243 PEKKKRKREGYEEGDYTQHKEIPVTEFIHTTDPIAILGTVNKLSFDQapngDLALATLDRLPETTAEIRTCCQDLKILGRKEFRTLLRWRLKVRDIFGL 341
                 79***********************************************99555666****************************************99 PP

                 XX.................XXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF3381  96 eekkekeekeeeeeedeeeeeeeeeeaeeeeldeeeeiekeleelkeeekkkkKrekkkankkkqkeiqr 165
                  +k +k+++++          ee e+++ e++dee +i++el++lk++e++kkK+e++++n++kqkei r
  KKY18911.1 342 TTKAKKQQAAA----------EEAEVTQIEPMDEELAIQEELQRLKDQESSKKKKERRRENERKQKEIVR 401
                 98833333322..........23457889**************************************986 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.095
                 HH-XXXX.................XXXXX..XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX CS
     DUF3381  91 kelgleekkekeekeeeeeedeeeeeeeeeeaeeeeldeeeeiekeleelkee.ekkkkKrekkkankkkqke 162
                  +++l + k +      +ee++e+ + e +++++e++ e +++++el+++ e   ++++ r +k+++k+ +k+
  KKY18911.1 436 SQVKLTNGKMEVA----DEESSES-DLELDDEDDESDPEADRLDRELDAMYESyRERREDRDSKERAKRLRKL 503
                 2222222211111....1111111.122223334444666677788777755413444556666666666665 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.8
                 ..........XXXXX..XXXXXX...XXXXXXXXX CS
     DUF3381 105 eeeeeedeeeeeeeeeeaeeeel...deeeeieke 136
                 +e+             + +++++    e+ee+ ++
  KKY18911.1 598 KES-------------KPSQDDMwedSEDEEVTTS 619
                 111.............1111111111222222222 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 2.1
                 ...............X..XXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF3381 101 keekeeeeeedeee.e..eeeeeeaeeeeldeeeeiekeleelkeeekkkkKrekk 153
                  e k  ++ + +++ e    ++    ++e  +e    +++++l ++ +kkk +ek 
  KKY18911.1 754 LEAKGRKKFKAAQKlEklRRKSALLADDEGISERDKANSIAKLMSRAAKKKPKEKV 809
                 33333333222222211222222233333333334456677777776666666664 PP

  == domain 5  score: -4.9 bits;  conditional E-value: 4
                 XXXXXXXXXXXXXXXXX CS
     DUF3381 145 kkkkKrekkkankkkqk 161
                  kk  r +k+ +kk++k
  KKY18911.1 839 LKKDVRAEKRVAKKQKK 855
                 22333333333333333 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   9.6e-06     0.043       9      41 ..      54      86 ..      50      91 .. 0.88
   2 ?   -2.3   0.6      0.64   2.9e+03     142     177 ..     361     396 ..     358     410 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.6e-06
                     T-EEEESS-TTSHHHHHHHHHTTTTSEEEEEES CS
  Methyltr_RsmB-F  9 eetilDlcaaPGgKTthiaelmknkgtvvAvda 41
                      + +lDlcaaPG+ T   ae m   + ++ vd 
       KKY18911.1 54 SKVLLDLCAAPGSWTQVAAETMPAGALIIGVDL 86
                     5679********************999999986 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.64
                      STTTTHHHHHHHHHH-TTEEEESSBSTTSTTSSECE CS
  Methyltr_RsmB-F 142 lveEneevieeaLkkredvelvetelsepkglklge 177
                      ++ ++e +i+e L++ +d e+++ + +  ++ + ++
       KKY18911.1 361 EPMDEELAIQEELQRLKDQESSKKKKERRRENERKQ 396
                      667788999999999999999888655543333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (860 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1652  (0.0921412); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.48
# Mc/sec: 5396.60
//
Query:       KKY18912.1  [L=888]
Description: putative importin beta-1 subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-13   47.2  13.3     0.0012   18.9   0.1    9.6 11  HEAT      HEAT repeat
    3.9e-11   42.7   2.5      4e-09   36.2   0.1    4.3  4  IBN_N     Importin-beta N-terminal domain
    4.8e-11   42.9   9.4    9.7e-07   29.2   0.0    7.4  8  HEAT_EZ   HEAT-like repeat
    6.1e-10   39.4   6.3    0.00028   21.2   0.0    5.8  5  HEAT_2    HEAT repeats
    6.7e-06   26.2   5.6        1.1    9.3   0.0    6.5  6  Xpo1      Exportin 1-like protein
    3.2e-05   23.6   3.1       0.17   11.4   0.0    4.6  6  CLASP_N   CLASP N terminal
    8.4e-05   22.5   0.3      0.061   13.2   0.0    3.7  3  DUF3385   Domain of unknown function (DUF3385)
     0.0083   16.1   0.9       0.99    9.5   0.0    4.3  4  Arm       Armadillo/beta-catenin-like repeat
  ------ inclusion threshold ------
      0.013   14.4   0.0       0.48    9.2   0.0    2.9  2  TraG_N    TraG-like protein, N-terminal region
      0.082   12.4   0.1        3.9    6.9   0.0    3.0  2  Tti2      Tti2 family


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       5.5   9.9e+03       3      28 ..       4      29 ..       3      31 .. 0.75
   2 ?    2.1   0.0      0.17   3.1e+02       8      25 ..      44      62 ..      42      66 .. 0.78
   3 ?   -2.8   0.0       6.6   1.2e+04       2      29 ..     131     158 ..     130     159 .. 0.70
   4 ?    4.0   0.0      0.04        72      12      26 ..     188     202 ..     180     207 .. 0.87
   5 ?    3.8   0.0     0.047        85       1      28 [.     220     247 ..     220     250 .. 0.93
   6 ?    1.2   0.1      0.33   5.9e+02       3      31 .]     326     361 ..     324     361 .. 0.66
   7 !   14.5   0.0   1.7e-05     0.031       2      29 ..     370     397 ..     369     398 .. 0.91
   8 !   18.9   0.1   6.9e-07    0.0012       2      31 .]     412     441 ..     411     441 .. 0.96
   9 ?    0.3   0.1      0.65   1.2e+03      13      29 ..     464     480 ..     450     482 .. 0.77
  10 ?   -1.6   0.0       2.6   4.6e+03      11      28 ..     512     529 ..     510     531 .. 0.84
  11 ?   -1.8   0.0       3.1   5.6e+03       1      29 [.     642     671 ..     642     673 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.5
                HHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT  3 PlllkllsDpspeVReaAakaLgala 28
                +l+l++  +p+++ R +A + L + a
  KKY18912.1  4 NLVLQNTLSPDADARHNAEQQLSQAA 29
                67888888999999999977666655 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.17
                HHT-.SSHHHHHHHHHHHH CS
        HEAT  8 llsD.pspeVReaAakaLg 25
                l +D  +p++R+aA +aL 
  KKY18912.1 44 LANDsAAPQIRMAAGLALK 62
                5566477889****99996 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 6.6
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                 + +l+++    s +  ++++ ++g ++e
  KKY18912.1 131 MQALVQNVGQGSDHLKQSSLITIGYICE 158
                 5566666666667777888999999997 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.04
                 SSHHHHHHHHHHHHH CS
        HEAT  12 pspeVReaAakaLga 26 
                 ++ +VR aA+ aLg+
  KKY18912.1 188 TNHDVRNAALTALGD 202
                 5789*********97 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.047
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 ++ +++++ + ++ ++ + A+ +L +++
  KKY18912.1 220 IMQVVCEATQAEDTKIQAGAFGCLNRIM 247
                 7999*********************997 PP

  == domain 6  score: 1.2 bits;  conditional E-value: 0.33
                 HHHHHHHT-.......SSHHHHHHHHHHHHHHHHCS CS
        HEAT   3 PlllkllsD.......pspeVReaAakaLgalaevl 31 
                 P+ll+ll+        ++ +V +aA ++L   a+++
  KKY18912.1 326 PVLLQLLTKveeddmeDEYNVAKAAYQCLQLYAQCC 361
                 555555543355567677789999999998777766 PP

  == domain 7  score: 14.5 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                 l ++  +l+ ++++ R+aA+ ++ga++ 
  KKY18912.1 370 LEFVEGNLRNEDWRRRDAAVSSFGAIMD 397
                 7889999*******************86 PP

  == domain 8  score: 18.9 bits;  conditional E-value: 6.9e-07
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHHCS CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalaevl 31 
                 lP+l+ ++ D+  +V ++Aa+aL +++ ++
  KKY18912.1 412 LPVLIGMMDDKVVQVKDSAAYALSRICDFC 441
                 8**************************987 PP

  == domain 9  score: 0.3 bits;  conditional E-value: 0.65
                 SHHHHHHHHHHHHHHHH CS
        HEAT  13 speVReaAakaLgalae 29 
                 +p+  +++++aL +lae
  KKY18912.1 464 NPKMAASCCLALMNLAE 480
                 6666789999*999998 PP

  == domain 10  score: -1.6 bits;  conditional E-value: 2.6
                 -SSHHHHHHHHHHHHHHH CS
        HEAT  11 DpspeVReaAakaLgala 28 
                 D + + R aA + L  + 
  KKY18912.1 512 DADNQLRTAAYEVLSSFT 529
                 788999*****9998875 PP

  == domain 11  score: -1.8 bits;  conditional E-value: 3.1
                 HHHHHHHHH.T-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkll.sDpspeVReaAakaLgalae 29 
                 ++P+l ++l + ++p+  ++A+  + ++a+
  KKY18912.1 642 FVPFLYNALgNQDEPSLCSMAIGLVSDIAR 671
                 589999999777888888888888888875 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   2.2e-12     4e-09       1      74 []      21     102 ..      21     102 .. 0.93
   2 ?   -0.6   0.0      0.69   1.2e+03      16      40 ..     177     201 ..     168     207 .. 0.69
   3 ?    2.6   0.0     0.071   1.3e+02       9      44 ..     495     530 ..     492     538 .. 0.85
   4 ?   -3.2   0.1       4.5     8e+03      13      31 ..     683     701 ..     682     703 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 2.2e-12
                 HHHHHHHHHC..STCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHC........GSXHHHHHHHHHHHHHHHHH CS
       IBN_N   1 AekqLkqlek..qpgflsallqilanseselevRqlAalyLknlitkhWsdeeekq........slpseekeqIrnnllnllgs 74 
                 Ae+qL q+++  + g+l +l + lan++  +++R++A+l Lkn  +++  d+++          ++++++k+q+++ +l++lgs
  KKY18912.1  21 AEQQLSQAAEvdFAGYLTTLGRELANDSAAPQIRMAAGLALKNAFSSR--DATRLRevqtrwaqQIDPQVKKQVKDLALQTLGS 102
                 9*************************99999*****************..66666677899999*****************986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.69
                 HHHHHHHHCTTSHHHHHHHHHHHHH CS
       IBN_N  16 sallqilanseselevRqlAalyLk 40 
                  a++q + ++e+ + vR +A++ L 
  KKY18912.1 177 TAVVQGARKEETNHDVRNAALTALG 201
                 5566666777777788888877765 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.071
                 HCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHH CS
       IBN_N   9 ekqpgflsallqilanseselevRqlAalyLknlit 44 
                 +++++++ +ll + ++ + ++++R +A  +L  + t
  KKY18912.1 495 KHFQDCVTSLLGVTEKADADNQLRTAAYEVLSSFTT 530
                 5799**********************9877766655 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 4.5
                 CHHHHHHHHHHCTTSHHHH CS
       IBN_N  13 gflsallqilanseselev 31 
                 +f+++ll+ l + ++++++
  KKY18912.1 683 QFMNYLLNNLRSNTLSNQL 701
                 7999999999888887665 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1         6   1.1e+04      36      52 ..      44      61 ..      37      63 .. 0.70
   2 ?    2.5   0.0      0.12   2.2e+02       7      55 .]     110     156 ..      90     156 .. 0.83
   3 ?    2.1   0.0      0.16   2.9e+02       3      12 ..     192     201 ..     174     210 .. 0.82
   4 ?   -3.3   0.1       8.1   1.5e+04      28      38 ..     323     333 ..     321     334 .. 0.81
   5 !   29.2   0.0   5.4e-10   9.7e-07       1      55 []     382     437 ..     382     437 .. 0.94
   6 ?    2.8   0.0     0.097   1.7e+02      23      52 ..     447     475 ..     438     478 .. 0.73
   7 ?    1.7   0.0      0.22     4e+02       6      50 ..     622     664 ..     619     669 .. 0.75
   8 ?    3.0   0.0     0.083   1.5e+02      10      40 ..     662     695 ..     658     698 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6
     HEAT_EZ 36 lLnddsd.eVRaaAagaL 52
                l nd+ +  +R aA  aL
  KKY18912.1 44 LANDSAApQIRMAAGLAL 61
                556666655699998887 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.12
     HEAT_EZ   7 AawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 Aa  ++++a  + el +++ pe++ aL++     sd+ ++ +++++g +
  KKY18912.1 110 AAQFIASIA--AIELPRQEWPELMQALVQNVGQGSDHLKQSSLITIGYI 156
                 555666666..6778888889********9999*******999999975 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.16
     HEAT_EZ   3 vRraAawaLG 12 
                 vR+aA+ aLG
  KKY18912.1 192 VRNAALTALG 201
                 6777777776 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 8.1
     HEAT_EZ  28 eilpaLlalLn 38 
                 e+lp Ll+lL+
  KKY18912.1 323 EVLPVLLQLLT 333
                 89999999985 PP

  == domain 5  score: 29.2 bits;  conditional E-value: 5.4e-10
     HEAT_EZ   1 wrvRraAawaLGr.laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 wr R aA++ +G+ + g  + +l plv+++lp L+ ++ d+   V+  Aa+aL+++
  KKY18912.1 382 WRRRDAAVSSFGAiMDGPDSKTLDPLVKQALPVLIGMMDDKVVQVKDSAAYALSRI 437
                 999********************************88866666***********97 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.097
     HEAT_EZ  23 qplvpeilpaLlalLnddsdeVRaaAagaL 52 
                 + +++ ++ aL ++L++ +++  a ++ aL
  KKY18912.1 447 ESQLQPLMSALFNGLMS-NPKMAASCCLAL 475
                 55778899999999997.666666666665 PP

  == domain 7  score: 1.7 bits;  conditional E-value: 0.22
     HEAT_EZ   6 aAawaLGr.laggepellqplvpeilpaLlalL.nddsdeVRaaAag 50 
                 a+++aL++ l+    e+  ++ +  +p+L ++L n d+++    A+g
  KKY18912.1 622 AVISALSTsLE----EDFLKYMESFVPFLYNALgNQDEPSLCSMAIG 664
                 77888886555....77777778999999988878899887777666 PP

  == domain 8  score: 3.0 bits;  conditional E-value: 0.083
     HEAT_EZ  10 aLGr...laggepellqplvpeilpaLlalLndd 40 
                 a+G    +a   +e +qp+ ++ + +Ll+ L++ 
  KKY18912.1 662 AIGLvsdIARALGEKCQPYCDQFMNYLLNNLRSN 695
                 555555566677889999999*******999875 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   1.3    0.0088        16      10      82 ..      11      91 ..       3     101 .. 0.69
   2 !    5.9   0.1    0.0095        17      13      56 ..     142     201 ..     127     239 .. 0.67
   3 !   21.2   0.0   1.6e-07   0.00028       2      87 ..     326     434 ..     325     435 .. 0.73
   4 ?    2.8   0.0     0.085   1.5e+02      41      67 ..     511     537 ..     455     554 .. 0.75
   5 ?   -1.4   0.0       1.7   3.1e+03      31      52 ..     641     663 ..     610     692 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0088
      HEAT_2 10 ndpdpevrraairaLgrignp...ealpaLve.lled.edpavRraaaeaLg.ai..gdpealpaLkellddddddvvRea 82
                 +pd + r++a ++L + ++     +l +L + l++d + p +R+aa  aL  a+  +d   l+  + ++++  d+ v+ +
  KKY18912.1 11 LSPDADARHNAEQQLSQAAEVdfaGYLTTLGReLANDsAAPQIRMAAGLALKnAFssRDATRLREVQTRWAQQIDPQVKKQ 91
                37999999999999997766422255777755488662669**********735522345567888888887777777765 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0095
      HEAT_2  13 dpevrraairaLgrignp..............ealpaLvell..ededpavRraaaeaLg 56 
                 ++ +++  ++++g i ++               +l a+v+ +  e ++ +vR aa +aLg
  KKY18912.1 142 SDHLKQSSLITIGYICEQpdhdlrealvaqsnAILTAVVQGArkEETNHDVRNAALTALG 201
                 555666666666655444445555555554446688888888544567889999999998 PP

  == domain 3  score: 21.2 bits;  conditional E-value: 1.6e-07
      HEAT_2   2 daLlqalen......dpdpevrraairaLg...rignpealpaLvell....ededpavRraaaeaLgai..g......d...pealpaLkellddddd 76 
                 ++Llq+l++        +++v++aa ++L    ++  pe++p ++e++    ++ed++ R aa+ + gai  g      d   ++alp+L  ++dd+ +
  KKY18912.1 326 PVLLQLLTKveeddmEDEYNVAKAAYQCLQlyaQCCGPEVIPFVLEFVegnlRNEDWRRRDAAVSSFGAImdGpdsktlDplvKQALPVLIGMMDDKVV 424
                 66777775543333233446**********8888889***99999998655567***************9552433344134577*********76655 PP

      HEAT_2  77 dvvReaAaeaL 87 
                 + v+ +Aa aL
  KKY18912.1 425 Q-VKDSAAYAL 434
                 5.699999998 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.085
      HEAT_2  41 ededpavRraaaeaLgaigdpealpaL 67 
                  d+d   R aa e L+ + +++a p+L
  KKY18912.1 511 ADADNQLRTAAYEVLSSFTTNSANPSL 537
                 366778899999999888888877766 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 1.7
      HEAT_2  31 ealpaLvell.ededpavRraaa 52 
                 + +p L ++l + ++p    +a+
  KKY18912.1 641 SFVPFLYNALgNQDEPSLCSMAI 663
                 44677777773334466666665 PP

>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.18   3.3e+02       9      41 ..     111     144 ..     108     153 .. 0.75
   2 !    9.3   0.0   0.00063       1.1      69     145 ..     161     237 ..     156     243 .. 0.85
   3 ?    4.5   0.1     0.018        33      49     116 ..     286     359 ..     267     370 .. 0.76
   4 ?    0.2   0.0       0.4   7.2e+02      74     117 ..     491     532 ..     483     560 .. 0.73
   5 ?    2.2   0.0     0.094   1.7e+02      71     136 ..     587     650 ..     571     665 .. 0.68
   6 ?    3.4   0.0     0.039        71      69     123 ..     786     838 ..     782     867 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHT.TTTSTTHHHHHHHHHCT.HHH CS
        Xpo1   9 aealaelflqey.pnnWpsffddllsllssspsg 41 
                 a+ +a ++  e   ++Wp++++ l++++ ++ ++
  KKY18912.1 111 AQFIASIAAIELpRQEWPELMQALVQNVGQGSDH 144
                 6677777766662578**********99997555 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00063
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTTS-HHHHHTSC...HHHHHHHHCCSCCCHHHH CS
        Xpo1  69 rndlkdllrsnvqkilelllqileqsqskkqsselveavLkclsswvswidiglivnnp...llnllfqlLsdpelreaa 145
                 ++dl+++l ++ ++il+ + q   + +++   +++ +a+L +l+  ++ i ++   + +   ++++++++ + ++++++a
  KKY18912.1 161 DHDLREALVAQSNAILTAVVQGARKEETN---HDVRNAALTALGDAIDFIRTNFENEGErnyIMQVVCEATQAEDTKIQA 237
                 789**********************9986...8*****************999988744478999999999888886665 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.018
                 HHHHHHHHHTSHTTTSCHHH.HHHHHHHHHHH...HHHHHHHHHHHHHHHHHCC..HHHHHHHHHHHHHHHHTT CS
        Xpo1  49 LkvlpeEiadfsrskleqer.rndlkdllrsn...vqkilelllqileqsqskk..qsselveavLkclsswvs 116
                 ++v  eEi+  + + + q++  ++l++  +     + ++l +llq+l + ++++  ++  +++a+ +cl+ + +
  KKY18912.1 286 CTVCEEEISIEDDNAAAQQEgSTELRQFFQFArisCREVLPVLLQLLTKVEEDDmeDEYNVAKAAYQCLQLYAQ 359
                 566677887544455555555888888777666679*************9999999888899999999988766 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.4
                 HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT.T CS
        Xpo1  74 dllrsnvqkilelllqileqsqskkqsselveavLkclsswvs.w 117
                 + l++++q+ +++ll + e+ + +   ++l  a+ ++lss+    
  KKY18912.1 491 NPLTKHFQDCVTSLLGVTEKADAD---NQLRTAAYEVLSSFTTnS 532
                 668899999999999999999976...788888888888887643 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.094
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTTS-HHHHHT.SCHHHHHHHHC CS
        Xpo1  71 dlkdllrsnvqkilelllqileqsqskkqsselveavLkclsswvswidiglivn.npllnllfqlL 136
                 +l+ +++ +  ki+ ++lq+l++   k+   ++ + ++ ++s+     + + +   ++++++l+++L
  KKY18912.1 587 RLEGEIAPQGDKIMHVCLQVLQTVPPKS---SVPDTIFAVISALSTSLEEDFLKYmESFVPFLYNAL 650
                 677889999999*********9999874...555555555544444444333333333666666666 PP

  == domain 6  score: 3.4 bits;  conditional E-value: 0.039
                 HHHHHHHHHHH.HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTTS-HHHH CS
        Xpo1  69 rndlkdllrsn.vqkilelllqileqsqskkqsselveavLkclsswvswidigli 123
                 +n+lk  l ++ +  i++ll++i +  + +   + l++a++ +++   + ++ g i
  KKY18912.1 786 ANALKANLLQEyATSIFQLLFTISQDVNRS---EGLLRASMGVIGDLADAFPNGEI 838
                 688888888888************998875...99999999999988887776666 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.7   6.7e+03      72     119 ..      68     115 ..      55     120 .. 0.58
   2 ?   -2.6   0.0       1.8   3.3e+03       8      31 ..     176     200 ..     171     205 .. 0.81
   3 !   11.4   0.0   9.5e-05      0.17      86     219 ..     402     544 ..     396     552 .. 0.78
   4 ?   -0.6   0.1      0.46   8.2e+02      64      99 ..     572     607 ..     568     611 .. 0.64
   5 ?   -1.8   0.0         1   1.8e+03      72     106 ..     619     653 ..     613     656 .. 0.83
   6 !    7.9   0.0    0.0011       2.1      68     105 ..     657     694 ..     652     700 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.7
     CLASP_N  72 tgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqala 119
                      l+e+     +q+dp+v++ ++ L         ++ q+a+q +a
  KKY18912.1  68 RDATRLREVQTRWAQQIDPQVKKQVKDLALQTLGSDPRAGQSAAQFIA 115
                 555555555555666666666666666655555555566666666555 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.8
     CLASP_N   8 llaafeg.ketelnwdaReknilkl 31 
                 l a+ +g +  e+n d R ++++ l
  KKY18912.1 176 LTAVVQGaRKEETNHDVRNAALTAL 200
                 5678889999999999999999987 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 9.5e-05
     CLASP_N  86 eqldpmveillptLlkllgdtKkiisqnanqalaallsnas...fsprilqvlsvalqdK..nvqpReysaiwLkilltrfeshkskleasllldliek 179
                 + ldp+v++ lp+L+ ++ d+   +  +a+ al+ ++  +     +++++ ++s+++++   n+++ + ++  L +l +rf   +   +++ l + +++
  KKY18912.1 402 KTLDPLVKQALPVLIGMMDDKVVQVKDSAAYALSRICDFCFesiDESQLQPLMSALFNGLmsNPKMAASCCLALMNLAERFV-AEDGQSENPLTKHFQD 499
                 569*****************************99998766422126777889999999962255555667777788888888.6666666677999999 PP

     CLASP_N 180 slkkgl.....eDanptVRetaRstfweffkvwPsrAksllssld 219
                 +++++l     +Da+ + R +a +++ +f+ +  + +  ++ +l+
  KKY18912.1 500 CVTSLLgvtekADADNQLRTAAYEVLSSFTTNSANPSLPIVANLS 544
                 999999666666**********99999999887777666665555 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.46
     CLASP_N  64 sLrttlsstgchllkelaiqlkeqldpmveillptL 99 
                 +L t+l s +++++++l  +  +q d+ ++  l++L
  KKY18912.1 572 ELQTSLASVLLSIIQRLEGEIAPQGDKIMHVCLQVL 607
                 677777777777777776666666666666665555 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 1
     CLASP_N  72 tgchllkelaiqlkeqldpmveillptLlkllgdt 106
                 t   +++ l+  l+e++ +++e+++p L + lg++
  KKY18912.1 619 TIFAVISALSTSLEEDFLKYMESFVPFLYNALGNQ 653
                 55677888999999999999*******99999876 PP

  == domain 6  score: 7.9 bits;  conditional E-value: 0.0011
     CLASP_N  68 tlsstgchllkelaiqlkeqldpmveillptLlkllgd 105
                 +l+s ++ l++++a+ l+e+ +p+++++++ Ll+ l +
  KKY18912.1 657 SLCSMAIGLVSDIARALGEKCQPYCDQFMNYLLNNLRS 694
                 6999****************************998766 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.94   1.7e+03      13      46 ..     178     209 ..     171     255 .. 0.67
   2 ?    4.8   0.2     0.013        24      97     143 ..     567     613 ..     509     630 .. 0.82
   3 !   13.2   0.0   3.4e-05     0.061      86     158 ..     641     714 ..     615     717 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.94
     DUF3385  13 elLlnilkteqsqsirrevikllGilGALDPykh 46 
                  ++++  k+e++ ++r+ ++  lG   A+D ++ 
  KKY18912.1 178 AVVQGARKEETNHDVRNAALTALGD--AIDFIRT 209
                 4455555666899999999888874..6666665 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.013
     DUF3385  97 dpslsshhaavveaimnifktlglkcvpfLdqiipallsvirttees 143
                   +l++ +++  +++++i++ l+ +  p  d+i++  l+v++t +++
  KKY18912.1 567 RITLEELQTSLASVLLSIIQRLEGEIAPQGDKIMHVCLQVLQTVPPK 613
                 457888999999******************************98753 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 3.4e-05
     DUF3385  86 vvinaLlrilkdpslsshhaavveaimnifktlglkcvpfLdqiipallsvirtte.esnlrefllqqLatLvs 158
                   +  L++ l ++   s  ++++  +  i + lg kc p+ dq ++ ll+ +r+ + +++l+ ++l+ ++++ +
  KKY18912.1 641 SFVPFLYNALGNQDEPSLCSMAIGLVSDIARALGEKCQPYCDQFMNYLLNNLRSNTlSNQLKPSILETFGDIAQ 714
                 455667777877777788899*******************************9554255788888888877765 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.7   4.8e+03      25      37 ..     189     201 ..     187     201 .. 0.85
   2 ?    1.5   0.1       0.2   3.5e+02      13      23 ..     324     336 ..     321     340 .. 0.77
   3 !    9.5   0.0   0.00055      0.99       8      41 .]     407     439 ..     400     439 .. 0.89
   4 ?   -3.6   0.0       7.7   1.4e+04      21      37 ..     658     674 ..     656     674 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.7
                 SHHHHHHHHHHHH CS
         Arm  25 deevqeeAawALs 37 
                 + +v+ +A++AL+
  KKY18912.1 189 NHDVRNAALTALG 201
                 668999*****96 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.2
                 HHHHHHHHTT..T CS
         Arm  13 avppLvrLLs..s 23 
                 ++p+L++LL+   
  KKY18912.1 324 VLPVLLQLLTkvE 336
                 79*******9633 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00055
                 HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   8 vieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 ++++ a+p+L+ +++++ ++v+  Aa ALs +++
  KKY18912.1 407 LVKQ-ALPVLIGMMDDKVVQVKDSAAYALSRICD 439
                 5555.8**************************95 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 7.7
                 TTTSSHHHHHHHHHHHH CS
         Arm  21 LssedeevqeeAawALs 37 
                 L s+  +++ ++a+AL+
  KKY18912.1 658 LCSMAIGLVSDIARALG 674
                 55888899999999996 PP

>> TraG_N  TraG-like protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.8      0.11     2e+02     208     277 ..     156     225 ..      61     249 .. 0.59
   2 ?    9.2   0.0   0.00027      0.48     139     266 ..     471     738 ..     448     751 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.11
      TraG_N 208 tCkeawsgLrarlanqvnpglkarlaaalkllgknanatafkdalsaasqyltgvsssasaediirqall 277
                  C++   +Lr++l +q+n  l+a  + a+k  ++++  +a  +al++a +++    ++   +++i+q++ 
  KKY18912.1 156 ICEQPDHDLREALVAQSNAILTAVVQGARKEETNHDVRNAALTALGDAIDFIRTNFENEGERNYIMQVVC 225
                 3555556677777777777777777777776666666666566666644444444444333566666655 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00027
      TraG_N 139 fGrqllsevrsarisdpalrqelqdFirdCvlpdlalalgayslddllkspdlydslrsplrtvart................................ 205
                   + l++ + +++ +d + +  l ++++dCv+  l+ + +a   ++l+++   y+ l+s ++t   +                                
  KKY18912.1 471 CCLALMNLAERFVAEDGQSENPLTKHFQDCVTSLLGVTEKADADNQLRTA--AYEVLSS-FTTN--Sanpslpivanlsdviiqrleatvgmqqqivsv 564
                 447888999999999******************99999999999999877..8888882.2222..022445555556677777777778888889999 PP

      TraG_N 206 ................................................................................................... 205
                                                                                                                    
  KKY18912.1 565 edritleelqtslasvllsiiqrlegeiapqgdkimhvclqvlqtvppkssvpdtifavisalstsleedflkymesfvpflynalgnqdepslcsmai 663
                 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

      TraG_N 206 ..............yptCkeaws....gLrar.lanqvnpglkarlaaalkllgknanatafkdalsaasqyltgvsssa 266
                                p+C++  +    +Lr+  l nq++p+  + ++   +++g +     f+++ls++ q+l++++  +
  KKY18912.1 664 glvsdiaralgekcQPYCDQFMNyllnNLRSNtLSNQLKPSILETFGDIAQAIGLH-----FETYLSVVAQVLQQAAGVT 738
                 99999999999999999999999766666543145566666666666666666655.....8888888888888887775 PP

>> Tti2  Tti2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0022       3.9      93     181 ..     381     465 ..     370     470 .. 0.78
   2 ?    1.7   0.1     0.084   1.5e+02     218     276 ..     595     652 ..     481     655 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0022
        Tti2  93 pWksgdlkaisvlawiirqlqskeieanwplivPpiLnllDdtdtsvKlrGlklLqtlleklesskllkrtGLdsvfedallpcllyLP 181
                  W+ +d  a+s +  i++  +sk+++   +   P+++ ++Dd+ ++vK ++   L+++++ +++s  + ++ L+ +++ al++ l++ P
  KKY18912.1 381 DWRRRD-AAVSSFGAIMDGPDSKTLDPLVKQALPVLIGMMDDKVVQVKDSAAYALSRICDFCFES--IDESQLQPLMS-ALFNGLMSNP 465
                 566333.46677777777777777778888889*******************************9..78888887764.5666666555 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.084
        Tti2 218 lldkilregilsglshasesprlvellleqlsevveelgistvkhLkrlipllseilsn 276
                 + dki+ ++ l+ l+  + + ++ ++++  +s +   l+++++k++++ +p l++ l n
  KKY18912.1 595 QGDKIM-HVCLQVLQTVPPKSSVPDTIFAVISALSTSLEEDFLKYMESFVPFLYNALGN 652
                 444444.5566666666666888888999999999999999999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (888 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.79u 0.35s 00:00:01.14 Elapsed: 00:00:00.55
# Mc/sec: 4859.60
//
Query:       KKY18913.1  [L=744]
Description: putative anaphase-promoting complex component cut20 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.7e-64  215.4   0.0    8.5e-64  214.8   0.0    1.3  1  ANAPC4       Anaphase-promoting complex, cyclosome, subunit 4
    3.4e-15   56.1   0.0      7e-15   55.1   0.0    1.6  1  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
       0.05   13.9   0.1       0.12   12.6   0.1    1.7  1  HpaP         Type III secretion protein (HpaP)


Domain annotation for each model (and alignments):
>> ANAPC4  Anaphase-promoting complex, cyclosome, subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.8   0.0   1.4e-67   8.5e-64       2     203 ..     253     452 ..     252     453 .. 0.98

  Alignments for each domain:
  == domain 1  score: 214.8 bits;  conditional E-value: 1.4e-67
      ANAPC4   2 llsldlpflssskkelvelarkssqlqslleyinetlkeiseewkealelldrklrnledelkeegeeeksisaeLldllltGlispalkdfLvnqlge 100
                 ll+++l+f+s s+++l+ +a ks+qlq+ll+yi++t+++i+ ew++a +l++++lrn+++ l+e+   + ++ ++ ++l++tG + ++lk+fLv++lge
  KKY18913.1 253 LLPMSLRFISASPRYLSIVAAKSTQLQNLLRYIQQTQNQINIEWRTANDLPSKFLRNINESLSEKM--DCNFLTAAYHLVVTGDCYAPLKEFLVDELGE 349
                 689*************************************************************98..789**************************** PP

      ANAPC4 101 rglkkwekavesayenirklvfehllpalerlivllseLrGlakweeryeslgldeeeidelletakslllkaeellqviseelkqfkaFinWlkvvid 199
                 rg+k+wekav s+ye+ir+lv+e+llpa+er+ ++ s+L+Gl+ +++ +++lgld  +++ + +t+++l l+a++ll v+ + l+qf+aF +Wl+ +id
  KKY18913.1 350 RGHKRWEKAVASGYETIRRLVHECLLPAIERCQIVTSRLKGLSGFRKAGGILGLDHDMLEGIDDTLDCLNLLAHKLLLVVGKDLRQFTAFAKWLRLEID 448
                 *************************************************************************************************** PP

      ANAPC4 200 rlad 203
                  +a+
  KKY18913.1 449 IQAA 452
                 9875 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   1.2e-18     7e-15       7      92 .]       1      99 [.       1      99 [. 0.93

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 1.2e-18
  ANAPC4_WD40  7 mDLiAlatedgellvfRlngqrvwtl..........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek...avtclgWgen 92
                 mDLiA a ed++  v Rl g rv+++          + +++   ++ + Wk  g lLa+a+ d+++rl++ ++gk+vh ls+  +    + +clgW++n
   KKY18913.1  1 MDLIAAALEDESWGVWRLGGGRVFGGpgftrekesrSVNTPRIAITTMTWKSLGMLLAIACTDNALRLVSTYTGKIVHVLSTRPTMpegQLSCLGWNMN 99
                 9****************************99888766667778899**********************************9998888889******986 PP

>> HpaP  Type III secretion protein (HpaP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1     2e-05      0.12      49      88 ..     256     295 ..     246     297 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2e-05
        HpaP  49 LsLrFdtssaesrqLllahrdaLereLeallrakrdieie 88 
                 +sLrF + s++   ++ a++++L++ L+ + + +++i+ie
  KKY18913.1 256 MSLRFISASPRYLSIVAAKSTQLQNLLRYIQQTQNQINIE 295
                 89******************************988****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:00.57
# Mc/sec: 3931.47
//
Query:       KKY18914.1  [L=417]
Description: putative cytochrome p450 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-44  151.2   0.0    5.3e-44  150.7   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.7   0.0     3e-48   5.3e-44      72     454 ..      11     401 ..       3     406 .. 0.80

  Alignments for each domain:
  == domain 1  score: 150.7 bits;  conditional E-value: 3e-48
                 HHHHHHHHHTTTTSSSTTCGH.HHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCS....EEETHHHHHHHHHHHHHHHHHSSHHHT CS
        p450  72 eallatsrkpfkgkgvlfang.ekwkklRrfltptltsfgkl.sleelveeeaedlveklrkkagess....elditellskaaldvigsilFgarfdl 164
                  ++++ ++   ++++v+  +  ek++k+R   tp+  +     +le+ ++e++  +++ +++k         ++d +++ + ++ldvi+s++++++f+ 
  KKY18914.1  11 GSWFKAFKLDADHENVISETDeEKHRKMRLKRTPAYSGA-DNpELESGIDEIICSMITLIETKYICDLnirrRMDFAQIAQFFTLDVITSLALSRSFGY 108
                 5688888888888888888888***************99.7779****************9986544445669*************************6 PP

                 TTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH.HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC.....SCSSCSHHHHHHHHCTTCTCTSS CS
        p450 165 ledeklselvkaveelssllskssvqllllfp.llkylptkllrklkeavkklkdlldklieerretldsa.....kksrrdfldalllakkekkgesk 257
                 le++  +++ + v+++ +    + ++++   p l k++  + +++l  +  + ++l + +++   ++l  +     k+ r d++  +++          
  KKY18914.1 109 LEED--TDIYDCVKTMEEK--VPIMNFMSAVPvLSKIMRMHWFQRLI-MPTVDDKLGMGKVKGVARQLVAQrygadKDVRLDMIGSFVKH--------G 194
                 6655..4566666666442..24444444444333333333333333.333333344444444444444444433333489999999888........5 PP

                 SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTT...T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS..CEE CS
        p450 258 lsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkr...eptyddlqklpyldavikEtLRlhpvvplllpRevtk..dvv 351
                 l+ +e a + l  ++ G+dT+++ ++ a+++++ +P++  +l +E+ ++ g       +t+ ++ +lpyl+a++kE+LR  pv+  l++++v+   d+ 
  KKY18914.1 195 LTLQEAADESLLQILVGSDTSATLIRVAMLHIIGTPQIYTRLVQEVTTTPGLPPltaVMTHVQVLRLPYLNACLKEALRQTPVAAGLMTKVVPPegDTL 293
                 ************************************************98765455699**************************77777776676777 PP

                 ETTEEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS.....CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGG CS
        p450 352 irgylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg.....nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpp 444
                  +g ++p Gte+  ++ ++h++ ev+ p++++F+peR+l++       +   +    l FG G+  C+Ger+A+m    ++a l++++e+ l+  ++p 
  KKY18914.1 294 PDGTFLPPGTEIGQCVIGVHHNVEVYgPDADVFRPERWLEAPIgseqlA-HMERTHELSFGYGKFKCLGERIAKMKTMKCIAELIRRYEWRLCYPEKPM 391
                 777**************************************99888854.47888889**********************************9877777 PP

                 EEESSCSSEE CS
        p450 445 pileksglll 454
                  ++ ++gl l
  KKY18914.1 392 EKNSNMGLFL 401
                 7766665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 2696.13
//
Query:       KKY18915.1  [L=390]
Description: hypothetical protein UCRPC4_g04710 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2618.57
//
Query:       KKY18916.1  [L=292]
Description: hypothetical protein UCRPC4_g04711 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-29  101.3   0.4    7.6e-29  101.0   0.4    1.1  1  Glyco_hydro_cc  Glycosyl hydrolase catalytic core


Domain annotation for each model (and alignments):
>> Glyco_hydro_cc  Glycosyl hydrolase catalytic core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.4   4.3e-33   7.6e-29      20     239 .]      37     274 ..      21     274 .. 0.84

  Alignments for each domain:
  == domain 1  score: 101.0 bits;  conditional E-value: 4.3e-33
  Glyco_hydro_cc  20 kisWyYnwss.kpsselssaalefvPmlwgaksad.tdalanvksa...........akenskylLgFNePDlks..qsnm.speeAaklwkqli 98 
                      isWy n+++  p+ e+s++++   Pmlwg++++  + +   v +             ++++++  gF ePD++   +s++ s+ +  ++w +++
      KKY18916.1  37 YISWYSNYEPiAPNVETSDHTIIGAPMLWGKGDQClSGTDGPVDAErlsnftvyvaaGETAPSIFFGFYEPDCDCdsSSHIpSVPDGIDAWNTYL 131
                     58******9835777888888999*******998764444444444668889999998999***********95543666646789********* PP

  Glyco_hydro_cc  99 qplre.kgvklvsPavaatnseegleWldeFleacs..kdckvdflavHwYkgdfeelkehieelheaynkpiWvTEfalqs...esgdasqeet 187
                     +plr+ +++ l+sP+++++ +    +Wl eF ++ s  +  ++d++++H+ k +  e ++ +e+++++++kp+W+TE+ + +    s+ ++q+ +
      KKY18916.1 132 APLRSsNSIPLGSPSMCTQLD---QKWLTEFNQTSSshSVPEWDVTSIHVNKPTSAEGIAVVEYYYQTFGKPVWITELTCVDdsdWSSCGDQNAV 223
                     ****88**********66655...79*******99965556**********9999999**********************99888888999999* PP

  Glyco_hydro_cc 188 keflnevlawldsqeyVeryawfgfrsevsnvgannaLlden..G.eltelgsaY 239
                     ++f++ ++++l++++yV  y  +      ++v   ++L++++  G +lt +g++Y
      KKY18916.1 224 NSFIDGMVDFLEETDYVYAYGANN----GEGVPGVWNLMESSssGkTLTATGEYY 274
                     *****************8776555....788888888887665577999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.52
# Mc/sec: 1689.89
//
Query:       KKY18917.1  [L=263]
Description: putative snare domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-27   96.1   6.3    7.8e-27   93.6   1.6    2.2  2  Syntaxin_2      Syntaxin-like protein
    4.5e-16   58.6   1.2    1.2e-15   57.2   1.2    1.8  1  SNARE           SNARE domain
    5.1e-05   23.0   8.8    0.00034   20.3   8.8    2.2  1  Syntaxin        Syntaxin
    0.00073   19.3   0.3     0.0018   18.0   0.2    1.8  2  Synaptobrevin   Synaptobrevin
     0.0059   14.6   2.3     0.0082   14.2   1.6    1.5  1  Prominin        Prominin
  ------ inclusion threshold ------
       0.02   15.5   0.1      0.052   14.2   0.0    1.8  1  Nitr_red_assoc  Conserved nitrate reductase-associated protei
      0.043   13.8   0.8       0.11   12.5   0.0    2.0  2  DUF5345         Family of unknown function (DUF5345)
       0.46   10.5   2.6        7.5    6.5   2.6    2.6  1  T2SSF           Type II secretion system (T2SS), protein F
       0.46   11.1   0.1       0.46   11.1   0.1    3.2  3  DUF883          Bacterial protein of unknown function (DUF883
        3.1    8.3   6.2        8.2    7.0   2.7    2.5  2  DUF16           Protein of unknown function DUF16


Domain annotation for each model (and alignments):
>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.6   1.6   4.3e-30   7.8e-27       1      99 [.      22     118 ..      22     120 .. 0.98
   2 ?    5.0   0.2     0.017        30       4      62 ..     178     237 ..     151     247 .. 0.77

  Alignments for each domain:
  == domain 1  score: 93.6 bits;  conditional E-value: 4.3e-30
  Syntaxin_2   1 issnlqkinsnvstleklvkqLgtkkdteelreklhelieeinelikktnellkklsqldnsssdsqqklqkekLkkdfkealqeFqkiqrqyaekekq 99 
                 +s++l++++sn+s l + ++ Lgtk+dt+++re++h+l ee++e +k++ + lkk++++++ ++  +q+++++kL+++f+++l+eFq iqr++ ek++ 
  KKY18917.1  22 LSTKLFELTSNISRLSNEISLLGTKRDTDRVRERVHDLLEETREGFKEVGDGLKKVQSWEDLNP--SQRYTAQKLSREFSASLSEFQVIQRRALEKQRT 118
                 689**********************************************************998..8******************************96 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.017
  Syntaxin_2   4 nlqkinsnvstleklvkqLgtk.kdteelreklhelieeinelikktnellkklsqldns 62 
                 ++ +i ++v +l++l++++ t  +++ e  + ++ ++e++   ++   + l++ s++++s
  KKY18917.1 178 EIRQIEQSVGELNELFRDVATMvREQGENLDMIDANVENTLVSARGADSELRSASRYQKS 237
                 577888888888888888888766777777777777777776666666666666666655 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   1.2     7e-19   1.2e-15       1      53 []     205     257 ..     205     257 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 7e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXXXXX CS
       SNARE   1 emvDrIdtnVenaqsnveraqkeLkkavkyqksnRklkciillilviillvvl 53 
                 e +D Id+nVen+ + +++a +eL+ a++yqks+R++ c++llil i++++++
  KKY18917.1 205 ENLDMIDANVENTLVSARGADSELRSASRYQKSARNKACCLLLILAIVVVIIV 257
                 56999**********************************************97 PP

>> Syntaxin  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   8.8   1.9e-07   0.00034      24     200 .]      25     204 ..      14     204 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.9e-07
    Syntaxin  24 klkkqneesktstraksvk.lkkrmesdikeikkraesvkarLeaLdksnkenekksgegsavdRirksqtaaLrkklkevmteynelrekireeyker 121
                 kl + ++++    ++ s+  +k+++++  ++++   e+ ++  ++  +  k+ ++  +  ++++R    +++ L++++   ++e++ ++ +  e+ ++ 
  KKY18917.1  25 KLFELTSNISRLSNEISLLgTKRDTDRVRERVHDLLEETREGFKEVGDGLKKVQSW-EDLNPSQR---YTAQKLSREFSASLSEFQVIQRRALEKQRTA 119
                 44445555555555555555688888888888888888888888888777766633.45555555...56789****************9999988876 PP

    Syntaxin 122 ieRrlevtGkevseeeieelietgesevflqkllqeqrgarealsei.......eeRhkevlelekslkeLhqlFldmavLVEeQG 200
                           e +++  ++ + +++ ++   +l ++ + +++  +e+        eR  e++++e+s+ eL++lF d+a++V eQG
  KKY18917.1 120 SSAARAALDDE-TRQSPDNAVYSDSHQQAQLHLANQDQLNLANQDEVdfqdsliVEREGEIRQIEQSVGELNELFRDVATMVREQG 204
                 55443333333.3344455555554444444444444555555555555555559******************************9 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.4   7.9e+03      43      63 ..      60      80 ..      49      83 .. 0.59
   2 !   18.0   0.2     1e-06    0.0018       4      84 ..     178     261 ..     175     263 .] 0.71

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.4
                   HHHHHHHHHHHHHHHHHHHHH CS
  Synaptobrevin 43 LqssaqqFkkqarklkrkmww 63
                   L+++ + Fk+    lk+ + w
     KKY18917.1 60 LEETREGFKEVGDGLKKVQSW 80
                   444445566666666666666 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1e-06
                    HHHHHHHHHHCCCCHHCCHHHHCHCCCCCHHHHCCCCHHHHHHHHHHH...HHHHHHHHHHHHHTXXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin   4 klakikaevdevkdimkeNidkvlergekldeLvdktenLqssaqqFk...kqarklkrkmwwknmkliiililvvlililiii 84 
                    ++++i++ v e  ++ ++    v e ge+ld+++   en   sa+      ++a + ++    k + l +il++vv+i++l ++
     KKY18917.1 178 EIRQIEQSVGELNELFRDVATMVREQGENLDMIDANVENTLVSARGADselRSASRYQKSARNKACCLLLILAIVVVIIVLAVV 261
                    799******************************988888777776665111455555555555555555555555555555544 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   1.6   4.6e-06    0.0082     355     440 ..     173     263 .]      49     263 .] 0.71

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.6e-06
    Prominin 355 nqtaevvpdlkkalakgreqikklakkip..realdavisdlenterssktfddvvekyekyrwliglivcsllll...ivvililgLlcG 440
                  + ++ ++++ +++ + +e ++++a++++   e ld +  ++ent  s + +d ++  +++y + +   +c+lll+   +vvi +l+ ++G
  KKY18917.1 173 VEREGEIRQIEQSVGELNELFRDVATMVReqGENLDMIDANVENTLVSARGADSELRSASRYQKSARNKACCLLLIlaiVVVIIVLAVVLG 263
                 445667889999999999999999999987557889999999***************9999999999999998775222667777888877 PP

>> Nitr_red_assoc  Conserved nitrate reductase-associated protein (Nitr_red_assoc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.9e-05     0.052      97     130 ..      63      97 ..      12     109 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.9e-05
  Nitr_red_assoc  97 vqekaeelgvel.tleqwaeLtplqRfaLiKLsrs 130
                      +e  +e+g  l ++++w++L+p qR++  KLsr+
      KKY18917.1  63 TREGFKEVGDGLkKVQSWEDLNPSQRYTAQKLSRE 97 
                     445555555556799******************97 PP

>> DUF5345  Family of unknown function (DUF5345)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2       1.8   3.2e+03      17      34 ..     100     117 ..      91     120 .. 0.56
   2 ?   12.5   0.0   5.9e-05      0.11       4      59 ..     206     261 ..     204     262 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.8
     DUF5345  17 Psleeleqllaeekerkr 34 
                  sl+e++ + + + e++r
  KKY18917.1 100 ASLSEFQVIQRRALEKQR 117
                 566666655555555555 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 5.9e-05
     DUF5345   4 glerlDqlievetPsleeleqllaeekerkrkrlrrElllFlliAllilsllllal 59 
                  l+++D+++e+   s       l+++++ +++++ +  +l+l++A++++ ++l ++
  KKY18917.1 206 NLDMIDANVENTLVSARGADSELRSASRYQKSARNKACCLLLILAIVVVIIVLAVV 261
                 6999***999999************************************9988765 PP

>> T2SSF  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.6    0.0042       7.5      85     124 ..     223     262 ..     174     263 .] 0.78

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0042
                 HHHHHHHHHHHHHHHHHHHTTXXXXXXXXXXXXXXXXXXX CS
       T2SSF  85 aeyleeerelrrkllaallepllllvvallvllillaill 124
                   + e + ++r+++ a+    +lll++a++v++i+la++l
  KKY18917.1 223 GADSELRSASRYQKSARNKACCLLLILAIVVVIIVLAVVL 262
                 556678889999999999999****************998 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00026      0.46       9      54 ..      28      74 ..      20      82 .. 0.76
   2 ?    0.3   2.3       0.6   1.1e+03       3      48 ..      94     139 ..      86     157 .. 0.61
   3 ?    2.9   0.1     0.091   1.6e+02       7      53 ..     182     231 ..     177     245 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00026
      DUF883  9 slladleellkeaade.ageeaeelRerleerlerarerlrdaeeav 54
                +l++++  l +e +   ++++++++Rer+++ le++re ++++ + +
  KKY18917.1 28 ELTSNISRLSNEISLLgTKRDTDRVRERVHDLLEETREGFKEVGDGL 74
                6666677777776654157799****************999888765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.6
      DUF883   3 leaeleslladleellkeaadeageeaeelRerleerlerarerlr 48 
                 l +e+ + l++ + + ++a ++ +   +++R+ l+++ +++ +++ 
  KKY18917.1  94 LSREFSASLSEFQVIQRRALEKQRTASSAARAALDDETRQSPDNAV 139
                 4555555555666666666666666666666666666655555544 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.091
      DUF883   7 leslladleellkeaad...eageeaeelRerleerlerarerlrdaeea 53 
                 +e+ + +l+el+++ a    e ge+++ + +++e++l +ar + ++++ a
  KKY18917.1 182 IEQSVGELNELFRDVATmvrEQGENLDMIDANVENTLVSARGADSELRSA 231
                 55566666667666664111445566666777777777777665555544 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.13   2.4e+02      27      70 ..       8      53 ..       2      82 .. 0.54
   2 ?    7.0   2.7    0.0046       8.2      28      72 ..     167     215 ..      83     230 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.13
                HB-...BHHHHHHH.HHHHH...HHHHHHHHHHHHHHHHHHHHHHH CS
       DUF16 27 efkds.nkqrLkki.eakvdklgeqinkleqkvekqgekikelkve 70
                e++d+    rL+++  +k+  l  +i++l ++++ +g k +  +v+
  KKY18917.1  8 EYQDDpEYSRLTESlSTKLFELTSNISRLSNEISLLGTKRDTDRVR 53
                5666644456665425666677777777777777776664433332 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0046
                 B-......BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHH CS
       DUF16  28 fkds....nkqrLkkieakvdklgeqinkleqkvekqgekikelkveqk 72 
                 f+ds     + ++++ie+ v  l+e +  ++  v++qge+++ + ++++
  KKY18917.1 167 FQDSliveREGEIRQIEQSVGELNELFRDVATMVREQGENLDMIDANVE 215
                 5555666566677777777777777777777777777777776666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1882  (0.10497); expected 358.6 (0.02)
Passed bias filter:                      945  (0.0527079); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.49
# Mc/sec: 1600.96
//
Query:       KKY18918.1  [L=519]
Description: putative udp-glucoronosyl and udp-glucosyl transferase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0028   16.5   0.0     0.0038   16.1   0.0    1.1  1  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
  ------ inclusion threshold ------
      0.016   15.6   0.0      0.035   14.6   0.0    1.6  1  Glyco_trans_1_4  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.2e-07    0.0038     307     386 ..     328     422 ..     235     450 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.2e-07
       UDPGT 307 kvlWrfdg....kkPstLaknt.........llvkWlPq..ndlLgHPktkAFvtHaGangvyEaisnGvPmvglPlFgdqrdNikrmeakgaav 386
                 +vlW++       +   +++           ++  Wl     +lL   ++  +v H+Gan+  Ea+  GvP v+l  + d  d +++ e  g +v
  KKY18918.1 328 QVLWKYIPvieeDHSALIDQEIlslrstgrvRVEGWLQVdpAALLESGSIVLYVNHGGANSFIEALGAGVPQVILACWVDTYDFANQAEWLGIGV 422
                 677777544443333333333344444566677788732115799999999*****************************999999887777665 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.9e-06     0.035      50     102 ..     349     404 ..     293     445 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.9e-06
                      HT..T-T.TEEEE---.THHHHHHHH-SEEEE-----SHHHHHHHHTT-EEEE-TG CS
  Glyco_trans_1_4  50 aa..gleerveftGfv.edlaellaaadvfvaPsegfglkllEamaaglpvVatdv 102
                      +   + + rv++ G++  d a+ll++ ++++  + g  ++ +Ea+ ag+p V  ++
       KKY18918.1 349 ILslRSTGRVRVEGWLqVDPAALLESGSIVLYVNHGGANSFIEALGAGVPQVILAC 404
                      221223468*******778*******************************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.51
# Mc/sec: 3082.03
//
Query:       KKY18919.1  [L=525]
Description: putative mfs quinate transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.7e-105  352.4  17.5   4.8e-105  352.0  17.5    1.0  1  Sugar_tr  Sugar (and other) transporter
    2.3e-21   76.1  34.2    4.8e-19   68.5  15.4    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  352.0  17.5  5.3e-109  4.8e-105       7     446 ..       6     451 ..       3     455 .. 0.95

  Alignments for each domain:
  == domain 1  score: 352.0 bits;  conditional E-value: 5.3e-109
                 HHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGG CS
    Sugar_tr   7 lggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevl 105
                 ++++l gYd+g+ g++lt+ +f  +f+++ +++sk +     +l+v++ ++G+++ ++++++l+ ++GRk++++ ++++f+ g ++ ++ +  +s+ + 
  KKY18919.1   6 ISSFLAGYDSGIAGGILTFKSFEHDFKYTGKHESKVS-----SLTVGLEQLGSFCAAVIIYPLTSKYGRKYAIIGSTAVFILGVIIEVINT--RSLGAW 97 
                 578**************************99998886.....**********************************************999..89**** PP

                 GGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-....TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHH CS
    Sugar_tr 106 ivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn....adgwrillglqlvpallllilllflPESPrylve 200
                 ++gR+++G+g+G++sv+vPmy +E++pk++Rg+++s+yq+ +t+Gilva+++++g++ +++    + +w+i++glqlv++ +lli+ ++lPES r+l++
  KKY18919.1  98 YTGRFIAGLGMGGQSVVVPMYSAEMTPKEIRGRCGSFYQWLYTWGILVAYWVDYGVAANNSisgtSREWQIPVGLQLVSSGILLIGAFTLPESVRWLLT 196
                 ********************************************************88888899*********************************** PP

                 TT-HHHHHHHHHHHHHC..HHHHHHHHHHHHHHHHHHH......HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HHHH CS
    Sugar_tr 201 kgkeeeakevlaklrge..edadrelaeekdsleaeqeee.kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks...llvt 293
                 k ++eea +++ ++rg+  e+   e++e +  l+ae  ++    ++ell+  + r r+lig +l ifq+ tG  a+  ++p+ f+ l  +++   ll  
  KKY18919.1 197 KSRTEEAWKSITWIRGDtgEKTVSEFNETQLGLKAEAAAKqDFNLRELLQPAN-RLRFLIGPMLFIFQNTTGSSALAVFGPQYFKLLVGDDEqrdLLLV 294
                 *************99997788889************99887788888988866.*******************************9988888899999* PP

                 HHHHHHHHHH.HHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS.......CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHH CS
    Sugar_tr 294 iivgvvnfva.tfvaiflvdrfGRRtllllGaagmaicfvilgivalllvaks....kaasivaivfialfialfalgwgpvpwvlvsElfpqsvRska 387
                 +++g+v+++a tf+ +fl++rfGRRtll  G++ ma+c++i + +++ ++++s    + a+ + +++i+l i++++++wgpvpw +v+E+fp+++R+++
  KKY18919.1 295 GLFGAVKVIAcTFFILFLSERFGRRTLLTGGSTAMAACMLITALIVDETSTTSsskvTNAGRATVAMIYLDIMVYNCSWGPVPWAYVPEIFPTRIRALG 393
                 ******9987366668***************************6666666666687888899999999999**************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CC CS
    Sugar_tr 388 laiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtle 446
                 la+++ ++w ++f  s+  p++ +++g + +fl+f+g+ + ++if+ff v et g+ le
  KKY18919.1 394 LALSMLAHWASSFCFSFASPYMISNVG-ANTFLIFMGFDICSAIFCFFLVKETRGQNLE 451
                 ***************************.****************************997 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5  15.4   5.4e-23   4.8e-19       3     296 ..       6     341 ..       5     377 .. 0.81
   2 !   21.8  10.7   8.5e-09   7.6e-05       8     182 ..     264     450 ..     262     475 .. 0.74

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 5.4e-23
       MFS_1   3 laaflsalarsilgpalpl.alaedlgispse....igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslw.lllvlrvl 94 
                 ++ fl++++++i+g +l+     +d+ +++       +l ++l  lg++ a++++ +l+ ++Gr+  ++ + ++f+lg +++ ++ + +  +++ +r++
  KKY18919.1   6 ISSFLAGYDSGIAGGILTFkSFEHDFKYTGKHeskvSSLTVGLEQLGSFCAAVIIYPLTSKYGRKYAIIGSTAVFILG-VIIEVInTRSLgAWYTGRFI 103
                 5789**************9999999997766666668888888***********************************.444444577777******** PP

       MFS_1  95 qGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.......Wravfyilaivsllafvlfllllpeepperkrkspke 186
                 +Glg+g+   ++  + a+++pke rgr  ++++  +  G+++++ +   +a++ +       W+ +  +  + s ++++     ++ +++ r+  ++ +
  KKY18919.1 104 AGLGMGGQSVVVPMYSAEMTPKEIRGRCGSFYQWLYTWGILVAYWVDYGVAANNSisgtsreWQIPVGLQLVSSGILLI---GAFTLPESVRWLLTKSR 199
                 ************************************************999988899********************88...88888888888888888 PP

       MFS_1 187 ee................................kgtgpaplvp....awkallkdpvlw....illialllfffgfsglltllplylqevlgls...g 242
                  e                                +              +++ll +   +      ++ ++ +++g s+l ++ p y++   g +    
  KKY18919.1 200 TEeawksitwirgdtgektvsefnetqlglkaeaA--------AkqdfNLRELLQPANRLrfliGPMLFIFQNTTGSSALAVFGPQYFKLLVGDDeqrD 290
                 88889999*99999999998888888665443222........134454566666665543234666666666777888********999999998877 PP

       MFS_1 243 lllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallav 296
                 lll+g l++++ ++++ +  ++ +ls r+grr+ l+ +  +++++ l+ al+  
  KKY18919.1 291 LLLVG-LFGAVKVIACTF--FILFLSERFGRRTLLTGGSTAMAACMLITALIVD 341
                 55555.555555555555..999*******988888888888777777777654 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 8.5e-09
       MFS_1   8 salarsilgpalplalaedlgispseigllltlyalga.avaslplGrlsdrfGrrrvlllglllfalglllllf.....a.......sslw.lllvlr 92 
                 +++++s+l+++ p++ +   g +++   ll++l++++  ++ ++++ +ls+rfGrr +l  g +++a+++l+ ++     +       ++   + +++ 
  KKY18919.1 264 NTTGSSALAVFGPQYFKLLVGDDEQRDLLLVGLFGAVKvIACTFFILFLSERFGRRTLLTGGSTAMAACMLITALivdetSttssskvTNAGrATVAMI 362
                 5667777777777777777776666666677777777756778888***********************777775355541544444455666688888 PP

       MFS_1  93 vlqGlga.galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrk 182
                  l  + + ++  p+  a++ ++fp + r+++++l +++  +++ +   ++++++s++g   +f+i+ ++ + ++++  +++++++++ ++ 
  KKY18919.1 363 YLDIMVYnCSWGPVPWAYVPEIFPTRIRALGLALSMLAHWASSFCFSFASPYMISNVGAN-TFLIFMGFDICSAIF--CFFLVKETRGQNL 450
                 8888888455559999******************************************86.555555555555554..5555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.52
# Mc/sec: 3056.70
//
Query:       KKY18920.1  [L=805]
Description: putative pre-rrna processing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-06   28.8   0.1    0.00016   21.9   0.1    3.2  3  DUF3712   Protein of unknown function (DUF3712)
    0.00022   21.7   2.4       0.82   10.2   0.3    4.4  4  LEA_2     Late embryogenesis abundant protein


Domain annotation for each model (and alignments):
>> DUF3712  Protein of unknown function (DUF3712)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.017   1.5e+02       3     119 ..     121     247 ..     120     253 .. 0.65
   2 ?   -0.5   0.0      0.16   1.4e+03      74      98 ..     349     380 ..     310     417 .. 0.72
   3 !   21.9   0.1   1.8e-08   0.00016      20     117 ..     457     563 ..     434     571 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.017
     DUF3712   3 fakvplpeiki.kgnsttglvdqtldit..dvdaftkflealvlseefklsvkGkt..tlklgglkfkgvtldKtvtlkG..lnslkgfsiedlqlllp 94 
                 +++ ++p+ik+  + ++t+++d  +d+     d+f +++++ ++ +  +l+vkG t  + k g +kf + ++   + l G  +    +f++++l++   
  KKY18920.1 121 MGTAKIPPIKLnIRPGHTNFIDFLTDLEpgELDGFRRLANDWLHGRLGQLEVKGVTslDFKSGIFKFGNRQITQILVLAGetIPTMPAFDVSKLNFYEV 219
                 57788899999778788877776666541156699*******************974566666667776666666666665533333444444444433 PP

     DUF3712  95 dp...edginllatvtlpNpsvvtielG 119
                 ++   e+   ++a+v++ N  +v ++++
  KKY18920.1 220 QEplgEKAMAAEASVSIKNEFPVHLDVP 247
                 3333377777777777777766666655 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.16
     DUF3712  74 tlk......Glnslk.gfsiedlqlllpdped 98 
                 t++       +++l  +fs+ d+++ lpdp  
  KKY18920.1 349 TVPlpfpghTFDNLIrNFSLADVHFSLPDPTA 380
                 44433554458898889999999999999933 PP

  == domain 3  score: 21.9 bits;  conditional E-value: 1.8e-08
     DUF3712  20 glvdqtlditdvdaftkflealvlsee.fklsvkGk....ttlklgglkfkgvtldKtvtlkGlnslkgfs.....iedlqlllpdpedginllatvtl 108
                  ++d+ l itd+d ft++++al++  + + l+vk+k    t + lg++ + +v+ d +v +  +++   fs       ++++  ++ +d  +l+ +v+l
  KKY18920.1 457 VVEDAPLHITDNDLFTEVVQALIFGAKgVMLQVKAKvdveTVTALGDFVVREVPADGEVLVDPFRGGMDFSnikptFGNISIEEST-ADSLSLRLNVNL 554
                 34899*******************9999**********97799******************9655555555655668888876555.8*********** PP

     DUF3712 109 pNpsvvtie 117
                  Np+ ++  
  KKY18920.1 555 TNPTEYSTF 563
                 ****98865 PP

>> LEA_2  Late embryogenesis abundant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.96   8.6e+03      42      78 ..     320     354 ..     318     363 .. 0.70
   2 ?    2.3   0.1     0.028   2.5e+02      10      85 ..     407     498 ..     405     510 .. 0.62
   3 !   10.2   0.3   9.2e-05      0.82       2      79 ..     552     634 ..     551     637 .. 0.79
   4 !    5.1   0.0    0.0035        32      21      82 ..     722     785 ..     709     792 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.96
                 SCEEEEEE.EEEEEHHHHHHHHHHHH..HCCSEEEEEE CS
       LEA_2  42 rgtttlev.pvsvsaddlarelrallagevgleleytl 78 
                 +++tt+ +    ++++d ++++++ll   +++++++ +
  KKY18920.1 320 GQDTTVYIhGTDSPSEDTPSWVSDLL---KSVTVPLPF 354
                 56676777568888888899999999...555555544 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.028
                 S-EEEEEEE..EEEEESSSEEEEEEECE-EEESSSCEE...............EEEEEEEEEHHHHHHHHHHHH...HCCSEEEEEEEEEEE.E CS
       LEA_2  10 fgvrydgle..ldlsyngqrlasgtspqgfsqpargtt...............tlevpvsvsaddlarelrall.agevgleleytlrgrlkvl 85 
                 f++++d+++  +++ ++g++l+  + +    q+a+ t+               + + p+ ++++dl+ e+   l  g++g+ l++++++ ++++
  KKY18920.1 407 FPLDVDRVRadAEVFFKGRKLG--QLDLRKWQAANTTRvedkdagpallvesvVEDAPLHITDNDLFTEVVQALiFGAKGVMLQVKAKVDVETV 498
                 6677777773344445888888..3333333333333344556666555544333447999999987777777768899999999999999864 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 9.2e-05
                 EEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH........HHHHHHHH..HCCSEEEEEEE CS
       LEA_2   2 lrvrNPNsfgvrydgleldlsyngqrlasgtspqgfsqpargtttlevpvsvsaddl........arelrallagevgleleytlr 79 
                 + ++NP + +  +  + + +++n ++l+ +++    ++++++ t lev+++   +++        +rel ++     g+++++tl+
  KKY18920.1 552 VNLTNPTEYSTFVPYVNINILANKTVLG-HAVARNLTVAPGNNTNLEVRAKWEPFQAsgvegkrvGRELLSQY--ISGFNTTLTLK 634
                 7889******999***************.*******************9887777766666544433333333..67777777776 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.0035
                 EEESS.SEEEEEEECE-EEESSSCEEEEEEEEEEEHHHHHHHHHHHH...HCCSEEEEEEEEEE CS
       LEA_2  21 lsyng.qrlasgtspqgfsqpargtttlevpvsvsaddlarelrall.agevgleleytlrgrl 82 
                   yn  +++++   + +f ++++ ++t ++pv  s   ++ ++ +++ +g+++l+ + ++ +r+
  KKY18920.1 722 AFYNHtEPVGTIDYDLPFAVAPGASKTPRLPVDWSLGGAGYDAVRDAlGGSLKLDAKADVGIRI 785
                 445444899999999***********************99999999978777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (805 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.53
# Mc/sec: 4556.25
//
Query:       KKY18921.1  [L=375]
Description: putative 1-aminocyclopropane-1-carboxylate deaminase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-37  129.8   0.0      2e-37  129.2   0.0    1.2  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.2   0.0   1.1e-41     2e-37       5     292 ..      20     360 ..      17     362 .. 0.82

  Alignments for each domain:
  == domain 1  score: 129.2 bits;  conditional E-value: 1.1e-41
                 SSS--EEEECCTCCCCCCE......EEEEEGGGST...TSBTTHHHHHHHHHHHHTTTTTSEEEEEBS..SHHHHHHHHHHHHHT-EEEEEEETTS-.. CS
        PALP   5 igpTPlvrlprlskelgvp......lflKlEslnp...tgSfKdRgaeyllarlkegtgaktvveass..GNhgralAaaaallGlkvtivvpadas.. 90 
                  gp+P+ +lpr+s++l         +++K++++n    +g++K+R++eyl+a+++ + ga+t++  ++  +Nh r +Aa++a++Gl + ++ +++++  
  KKY18921.1  20 FGPSPIQQLPRMSADLSSTsgkavnIYAKRDDCNSglaFGGNKTRKLEYLIAEAQAQ-GADTLISVGGiqSNHTRQVAAVSAKFGLNCKLLQEHWVPgd 117
                 69***********555444444577*********7799***************8888.888888888888*********************66666644 PP

                 ..H.....HHHHHHHHTT-EEEEE........................CCHHHHHHHH.HHHHHHHSTTCEE--TTT..SHHHHHHHHTHHHHHH...H CS
        PALP  91 ..p.....ekvallrllGaevvev........................ggdydeavaa.aaelaaegegaylvsqfd..nptviegygtiglEil...e 152
                   p     ++++l rl+ a+v+                          ++d ++++ a + +  aeg+ +y+++ +   +p++ +g +  ++E++   +
  KKY18921.1 118 drPgyadvGNLQLSRLMSADVTIGppvvssteqpqslktdgttsnvfeHKDDKTRLTAlMDKTRAEGGTPYWIPAGAsdHPLGGLGFARWAFEVAaqeK 216
                 33467777***********999998888888888888776555555543334444444355777779999999999988***************96666 PP

                 HTTTTEEEEEEE-SSSHHHHHHHHHHHH......HSTT-EEEEEEECTTCGGTTCCS..S.SS..B.SSS.CCSTCSCGTTCCHHHH...SEEEEEEEE CS
        PALP 153 qlggkpdavvvpvGgGgliaGiaaglke......rrpdvrvigvepegsdalarslragrrvtvpvsdtiadglavgspselafell...drlvdeivt 242
                  lg  +d+++v++ +G+++aGi+ag+k       + p+ +v+g++++  ++ +r         +  ++ +a+ ++ + p++l+++ +   +r+   +++
  KKY18921.1 217 SLGVFFDTIIVCAVTGSTMAGIVAGFKLleslspSAPKRQVVGIDASARPSETRET------VLRLTKLTASKIGLD-PESLTLDDIildARYHAGCYG 308
                 67799***********************9998888888******998444444444......233335556666666.77777777777799******* PP

                 EEHHHHHHHHHHHHHHHSB-B-H.HHHHHHHHH.HHHHHHCCTTCEEEEEEE CS
        PALP 243 vsdeealeamrllarregivvep.ssaaalaal.klreagelkegdrvvvil 292
                 ++d+e++ea+r  a+ e ++++p + +++la++ +++++ge+keg++v+  +
  KKY18921.1 309 IPDQETIEAIRYGASMEAMITDPvYEGKSLAGMvDMARKGEFKEGSNVLYAH 360
                 ***********************************************99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 2439.70
//
Query:       KKY18922.1  [L=534]
Description: putative nonsense-mediated mrna decay protein 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-79  267.3   1.7    1.2e-79  267.3   1.7    1.4  2  NMD3             NMD3 family
  ------ inclusion threshold ------
      0.016   14.6   0.4       0.19   11.2   0.1    2.3  2  zf_Rg            Reverse gyrase zinc finger
       0.19   11.7   3.2        5.3    7.1   0.1    2.7  2  HypA             Hydrogenase/urease nickel incorporation, met
       0.24   11.0   4.0       0.42   10.2   0.7    2.4  2  TackOD1          Thaumarchaeal output domain 1
       0.81    9.8   7.9         72    3.5   7.9    2.8  1  DZR              Double zinc ribbon
        2.4    8.3   5.5         26    4.9   0.1    3.2  3  CpXC             CpXC protein
          3    7.9   7.4         25    5.0   1.4    3.7  3  zinc_ribbon_6    Zinc-ribbon
        5.9    7.8   9.0          2    9.3   0.4    3.0  3  Tnp_zf-ribbon_2  DDE_Tnp_1-like zinc-ribbon
        6.2    7.0   5.8         23    5.2   2.9    2.8  2  FYVE             FYVE zinc finger


Domain annotation for each model (and alignments):
>> NMD3  NMD3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.3   1.7   5.9e-83   1.2e-79       1     243 []      26     256 ..      26     256 .. 0.97
   2 ?   -3.5   0.1       2.9   5.9e+03     158     191 ..     463     496 ..     457     503 .. 0.63

  Alignments for each domain:
  == domain 1  score: 267.3 bits;  conditional E-value: 5.9e-83
        NMD3   1 CcrCGkeieeling..lCedCllkevditegiek.ievevCkeCgryl.pkgkWvkaeleseellaeclkklvekgLkvseeveevkvelvdaefiwte 95 
                 C++CG++i+ + ++  lC dCl+ ++d++egi++ ++++ C++C+r+l p  +W+ a+ es+ella+cl+kl  +gL+        kv+++da f+wte
  KKY18922.1  26 CYNCGAPIDGTLSAgaLCYDCLKLTTDVSEGIQReATLHTCRDCERWLqPPAQWLVAHPESRELLAICLRKL--RGLH--------KVRVIDAGFLWTE 114
                 ********65555568********************************9777********************..****........************* PP

        NMD3  96 phskrikvkvtvqgevrgenetilqqevevevkvkrqqCprCsriagg.yyeaivQvRqkrelteeehkrtfelleqlilkhdahafiskikevkeGlD 193
                 phs+rikvk+tvq+e+   ++tilqq++eve++v++qqCp+C++++++  ++a vQvRqk     + hkrtf++leqlilkh ah+++++ikevk+GlD
  KKY18922.1 115 PHSRRIKVKITVQQEA--AEGTILQQTFEVEYVVAHQQCPDCAKSYTAnVWRASVQVRQK-----VPHKRTFLYLEQLILKHGAHKDTINIKEVKDGLD 206
                 ****************..6699**************************9***********.....********************************** PP

        NMD3 194 fyfgsksaArklveflksevggkvkeseklvsedkksgkevyrltysvrl 243
                 f+f++++ A+k+v+fl+s ++++vk+s++l+s+d ++++++y++tys++l
  KKY18922.1 207 FFFAQRNSAEKFVDFLTSSTPVRVKKSQELISMDVHTSTKSYKFTYSCEL 256
                 ***********************************************997 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.9
        NMD3 158 teeehkrtfelleqlilkhdahafiskikevkeG 191
                 +ee + ++ ++  q  + +++ha+ ++  e+++G
  KKY18922.1 463 DEELRSTLALYKAQKAAAQRRHADRMEGIEEEDG 496
                 4555556666666777777888887777777766 PP

>> zf_Rg  Reverse gyrase zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   9.4e-05      0.19       9      43 ..      25      58 ..      22      64 .. 0.83
   2 ?    1.0   0.0      0.15   2.9e+02       4      14 ..     145     155 ..     143     160 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.4e-05
       zf_Rg  9 lCPNCgGdisdeRlekGLpCkrClPkegdvckaLk 43
                lC NCg +i    l +G +C+ Cl    dv + ++
  KKY18922.1 25 LCYNCGAPID-GTLSAGALCYDCLKLTTDVSEGIQ 58
                8*******95.67***********88888877665 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.15
       zf_Rg   4 avfeklCPNCg 14 
                  v ++ CP C 
  KKY18922.1 145 VVAHQQCPDCA 155
                 58899*****5 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.017        34      66     102 ..      19      56 ..       7      65 .. 0.81
   2 ?    7.1   0.1    0.0027       5.3      51      83 ..     130     161 ..      88     171 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.017
                 EE--EEEETTTS-EEECHHH.HHS-TTTSSS-EEEEES CS
        HypA  66 evpvkvrCreCgkefeleek.alrCpkCgsadveivsG 102
                 ++++++ C +Cg+ ++ + +  + C +C +  +++ +G
  KKY18922.1  19 QTQATILCYNCGAPIDGTLSaGALCYDCLKLTTDVSEG 56 
                 5688999*****999955433456****9999999888 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0027
                 HHCC.TTTT-EEEEEEE--EEEETTTS-EEECH CS
        HypA  51 laegtvlegaeLeieevpvkvrCreCgkefele 83 
                 +aegt+l+  ++e+e v ++ +C +C k+++ +
  KKY18922.1 130 AAEGTILQ-QTFEVEYVVAHQQCPDCAKSYTAN 161
                 45777777.7888**************998755 PP

>> TackOD1  Thaumarchaeal output domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.7   0.00021      0.42      97     159 ..      17      76 ..      14      81 .. 0.87
   2 ?    1.0   0.1      0.15   2.9e+02      52      81 ..     127     156 ..      81     164 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00021
     TackOD1  97 dieeqelihhftCgnvgpeeeflkegkleCpkCktkLrhiGvDYdrplevykCnsCkslfsep 159
                 + ++q++i +++Cg+  p +  l  g+  C  C +  + +    +r ++ ++C++C+++ + p
  KKY18922.1  17 QAQTQATILCYNCGA--PIDGTLSAGA-LCYDCLKLTTDVSEGIQREATLHTCRDCERWLQPP 76 
                 5688999*******6..7777777775.5****************************998765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.15
     TackOD1  52 seelleelvkrglleeelvdrirlCpsCks 81 
                 ++e +e    ++++e e v  +++Cp C  
  KKY18922.1 127 QQEAAEGTILQQTFEVEYVVAHQQCPDCAK 156
                 555555556666666667777777777754 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   7.9     0.036        72       9      40 ..      20      75 ..      15     164 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.036
         DZR  9 ppdarfCseCgtklkavaa........................edrCpsCgekvdp 40
                ++  + C++Cg++++ + +                         ++C  C++ ++p
  KKY18922.1 20 TQATILCYNCGAPIDGTLSagalcydclklttdvsegiqreatLHTCRDCERWLQP 75
                55566788888888766557556666666666666677777777777777766555 PP

>> CpXC  CpXC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.2     0.015        29      32      67 ..      58      93 ..      23     137 .. 0.71
   2 ?    4.9   0.1     0.013        26       2      16 ..     150     164 ..     149     180 .. 0.83
   3 ?   -1.4   0.1       1.2   2.3e+03      84     107 ..     446     475 ..     404     487 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.015
        CpXC 32 dgslfeatCpkCgatakleapllyhdpekellillv 67
                + + + +tC +C++  +++a+ l+  pe + l+ + 
  KKY18922.1 58 QREATLHTCRDCERWLQPPAQWLVAHPESRELLAIC 93
                44667789***************9999988776554 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.013
        CpXC   2 tCpaCgkefeaeiwt 16 
                 +Cp+C k+ +a++w+
  KKY18922.1 150 QCPDCAKSYTANVWR 164
                 7*************7 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.2
        CpXC  84 k....egytl..RlvidmaelaEkililea 107
                 +    ++y++  R v + +el+  +++++a
  KKY18922.1 446 QerleNDYEMflRDVEEDEELRSTLALYKA 475
                 022233344344777777777777777665 PP

>> zinc_ribbon_6  Zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   1.4     0.013        25      10      37 ..       4      31 ..       1      51 [. 0.82
   2 ?    1.9   0.4      0.12   2.3e+02      21      46 ..      55      80 ..      45      83 .. 0.72
   3 ?    1.7   0.0      0.13   2.7e+02      40      56 ..     141     158 ..     129     163 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.013
  zinc_ribbon_6 10 ldaeiaeqpmpeeyknkkvkilCnDCek 37
                   +d   ++ ++p++ ++++++ilC  C++
     KKY18922.1  4 MDLDTQHINLPANQAQTQATILCYNCGA 31
                   6777777889****************87 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.12
  zinc_ribbon_6 21 eeyknkkvkilCnDCekksevkfhvl 46
                   e ++++ +  +C+DCe+  + +  +l
     KKY18922.1 55 EGIQREATLHTCRDCERWLQPPAQWL 80
                   55666666668****98777666665 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.13
  zinc_ribbon_6  40 evkfhvlglkCkeC.gSY 56 
                    ev++ v+ ++C  C +SY
     KKY18922.1 141 EVEYVVAHQQCPDCaKSY 158
                    556666666666663344 PP

>> Tnp_zf-ribbon_2  DDE_Tnp_1-like zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2     0.067   1.3e+02      11      26 ..      18      33 ..      14      33 .. 0.86
   2 ?    9.3   0.4     0.001         2       3      23 ..      43      70 ..      42      77 .. 0.89
   3 ?   -3.7   0.3         9   1.8e+04       3       8 ..     151     156 ..     149     159 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.067
  Tnp_zf-ribbon_2 11 ikkeTriiCqeCdvpl 26
                      +++++i C  C+ p+
       KKY18922.1 18 AQTQATILCYNCGAPI 33
                     5899********9885 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.001
  Tnp_zf-ribbon_2  3 CkvClk......kkikke.TriiCqeCd 23
                     C++Clk       +i++e T ++C  C 
       KKY18922.1 43 CYDCLKlttdvsEGIQREaTLHTCRDCE 70
                     ************9***99999******6 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 9
  Tnp_zf-ribbon_2   3 CkvClk 8  
                      C +C k
       KKY18922.1 151 CPDCAK 156
                      555654 PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   2.9     0.012        23      34      65 ..      41      72 ..      19      75 .. 0.86
   2 ?    1.1   0.0      0.22   4.4e+02       9      21 ..     148     160 ..     142     172 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.012
                EE-STTS-EEE.EEGGGTEEEEEEE-HHHHHH CS
        FYVE 34 vvCekCssklvallekeaeeksvrvCkeClae 65
                ++C++C + ++++ e  + e+ +++C++C + 
  KKY18922.1 41 ALCYDCLKLTTDVSEGIQREATLHTCRDCERW 72
                689*********9999999**********875 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.22
                 -SB-TTT--B--S CS
        FYVE   9 vkkCeiCakkFsl 21 
                  ++C+ Cak++++
  KKY18922.1 148 HQQCPDCAKSYTA 160
                 57999**999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1046  (0.0583412); expected 358.6 (0.02)
Passed bias filter:                      656  (0.0365888); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 3234.69
//
Query:       KKY18923.1  [L=485]
Description: putative mitochondrial 3-hydroxyisobutyryl [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.3e-130  435.0   0.0   2.8e-130  434.7   0.0    1.1  1  ECH_2          Enoyl-CoA hydratase/isomerase
    4.8e-28   98.1   0.0    3.6e-27   95.3   0.0    2.1  2  ECH_1          Enoyl-CoA hydratase/isomerase
  ------ inclusion threshold ------
      0.093   12.1   0.0        0.2   11.1   0.0    1.4  1  VPS13_mid_rpt  Repeating coiled region of VPS13


Domain annotation for each model (and alignments):
>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  434.7   0.0  4.7e-134  2.8e-130       1     334 []      47     399 ..      47     399 .. 0.93

  Alignments for each domain:
  == domain 1  score: 434.7 bits;  conditional E-value: 4.7e-134
                 .EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THH..HHHHHHHHHHHHHHHC-SS-EEEEE-BE CS
       ECH_2   1 vgvitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkee..eeffreeYklnyliatypkpvvalmdGi 97 
                 +++i+Lnrpk+lN+L+ +m+r++ ++l ew+k+d ++++++ gagekafCAGgDv++l++++++ + ++  +++f+ eYkl++liatypkp+v+ mdGi
  KKY18923.1  47 IRLIELNRPKKLNSLNGSMARKILPRLVEWQKSDMANIIIIAGAGEKAFCAGGDVAELAKQNDTPEGQQksTDYFALEYKLDHLIATYPKPYVSYMDGI 145
                 579***********************************************************9986554469*************************** PP

                 EETHHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSSTTHHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHHTT......... CS
       ECH_2  98 vmGgGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpgelGlylalTGarlkgadalaaglathyvpseklealeeaLaelessd..... 191
                 +mGgGvGlsvh++fr++tert+fAmPEt+IG+fPDvGgs+fLsrl+g++G+ylalT++rl+g++a+ ag+athy++s++l++l+++L+el ++d     
  KKY18923.1 146 TMGGGVGLSVHAPFRIATERTIFAMPETTIGFFPDVGGSFFLSRLDGQIGTYLALTSERLNGRNAYLAGIATHYLHSSDLKNLTTRLSELVFDDiapyf 244
                 ********************************************************************************************99***88 PP

                 ......--------......--.....--SH.HHHHHHHHHHT.-S-TTTHHHHHH.....T..--SHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT- CS
       ECH_2 192 ..eeaveevleelaeeaeeeee.....esel.aekreaidrlfsadsveeiveaLek....aeaeedewakktletlkkrsPtslkvtleqlrrgrkls 278
                    e v+++++e+++  +  +e     + +l  + r+aidr+fs+ ++eei++aLe+    ++ae ++wa++tl+tlk rsPtslkvtleq+rrg+++s
  KKY18923.1 245 erLELVNSTITEFTQPLPLASElppspHGDLvGSLRKAIDRCFSKGTIEEIITALEEesksSSAELSKWAEDTLKTLKMRSPTSLKVTLEQIRRGKSWS 343
                 88777788888887776654445444333332489*********************877666667788******************************5 PP

                 -HHHHHHHHHHHHHHHHHHSSHHHHHHHHTTS-.------SSSSGGG--HHHHHHH. CS
       ECH_2 279 slaevlrmElrlalrllaekDfveGvrallvdk.dkkPkWkpatleevtdeavealf 334
                  +ae++ +E+++a+++++++DfveGv+++l+ k  ++P+W+p++l+ev++e ve++f
  KKY18923.1 344 -IAETFVREHTMAKNFMRHPDFVEGVTSRLISKpPRTPNWQPSSLSEVSSETVESFF 399
                 .********************************99********************99 PP

>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   0.0     6e-31   3.6e-27       5     180 ..      46     226 ..      43     247 .. 0.88
   2 ?    0.2   0.0     0.064   3.8e+02     177     239 ..     308     370 ..     286     382 .. 0.80

  Alignments for each domain:
  == domain 1  score: 95.3 bits;  conditional E-value: 6e-31
                 TEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEE.BTSEEEEEB-HHHHHHHHC.....HHHHHHHCCHHHHHHHHHHSSSEEEEEE-S CS
       ECH_1   5 gvaviklnrPeavNalsaelltEliqalekleddksvravvLtG.gdkaFaaGadlkemaeeek.....akqallkeevlelwtklytvpkpviaavnG 97 
                 g+ +i lnrP+++N+l+  +   ++  l + +++  +  ++++G g+kaF+aG+d+ e+a+++      +k +++    ++l +++ t pkp ++ + G
  KKY18923.1  46 GIRLIELNRPKKLNSLNGSMARKILPRLVEWQKSDMANIIIIAGaGEKAFCAGGDVAELAKQNDtpegqQKSTDYFALEYKLDHLIATYPKPYVSYMDG 144
                 7899********************************************************99874543233333444456777899************* PP

                 EEETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHH CS
       ECH_1  98 aaigGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqll 180
                   +gGG+ l + + ++ia +   f+ +e+ +G++p++gg+++l r  G ++  +++l+ +++++ +a  +G+  + +   +l+
  KKY18923.1 145 ITMGGGVGLSVHAPFRIATERTIFAMPETTIGFFPDVGGSFFLSRLDG-QIGTYLALTSERLNGRNAYLAGIATHYLHSSDLK 226
                 *******************************************99666.7899******************988877666665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.064
                 GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHHHHHHH CS
       ECH_1 177 eqlleealelaeklaekspaalrqlkealnakledalaeqleaeaklfestfskddikeGlqa 239
                 ++l + a   ++ l   sp++l+   e++++  +   ae +  e ++ ++++ + d+ eG+++
  KKY18923.1 308 AELSKWAEDTLKTLKMRSPTSLKVTLEQIRRGKSWSIAETFVREHTMAKNFMRHPDFVEGVTS 370
                 556666666777788888888888888888888888888888888888888888888888775 PP

>> VPS13_mid_rpt  Repeating coiled region of VPS13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.3e-05       0.2      26      75 ..     288     335 ..     282     339 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.3e-05
  VPS13_mid_rpt  26 daetveevvkffkppksvlesvealssaasstleelkeqtragleyalee 75 
                     + t+ee++  ++ +++++ s  +ls++a++tl+ lk ++ ++l+ +le+
     KKY18923.1 288 SKGTIEEIITALEEESKSS-S-AELSKWAEDTLKTLKMRSPTSLKVTLEQ 335
                    6789********9998886.6.9************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.51
# Mc/sec: 2864.88
//
Query:       KKY18924.1  [L=125]
Description: hypothetical protein UCRPC4_g04719 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.48
# Mc/sec: 784.96
//
Query:       KKY18925.1  [L=521]
Description: putative glycoside hydrolase family 13 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-52  177.3   0.1    9.6e-52  176.6   0.1    1.3  1  Alpha-amylase  Alpha amylase, catalytic domain
      6e-26   90.6   0.3    1.3e-25   89.5   0.3    1.6  1  DUF1966        Domain of unknown function (DUF1966)


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.6   0.1   1.1e-55   9.6e-52       1     335 [.      24     326 ..      24     328 .. 0.91

  Alignments for each domain:
  == domain 1  score: 176.6 bits;  conditional E-value: 1.1e-55
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE.......-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHH CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifk.......spqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslk 89 
                    G++ Gii+kLdY++e+G+tai +sP+++       + +a+hgY+  + ++i+++fG+  dl +L +++h++++++++D+V+N ++++ + + ++  
     KKY18925.1  24 GTWAGIINKLDYIQEMGFTAIQISPVVEnidnnteYGEAYHGYWPINNYAINKHFGDESDLIQLAKEVHDRDMYLMVDVVINNMAQAINGSMPQPI 119
                    89*******************************99999************************************************9997444433 PP

                    STTSGGGCCC-E......ESS-STTC-TTTTCSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCC.CCCCCCTTT-SEEEETTCCCTTTCCCC CS
  Alpha-amylase  90 kkgepkrdyyiwkegkeekeppnnwkslfdgsaweydekaqeyylhlflkklpdLnteneevrkelkd.vvkfwlekgidGfRlDvvkhvskveal 184
                        +++++  +++   ++ +p +       ++w++++++q+ y++ ++  lpdL te+++v     + + +++ + +idG+R+D++khv+     
     KKY18925.1 120 ----DYSRFVPFNDE--KYFHPYCA-----VEDWTNTTETQDCYIYSEVVALPDLATESQTVIDMTGQwIKELVSNYSIDGLRIDAAKHVND---- 200
                    ....47788776654..66666665.....48*******************************99999999999999***************.... PP

                    HCCHCCHHHHHHHHHHHTCCGTT-EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS-HHHHHHHHHHHHHHS-CCCTTC CS
  Alpha-amylase 185 esngeflheftqalnetvasrkevmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlksisakklkellkkwlkaleeaaeea 280
                         fl  f +a+         v+t+gEv+s+ +edl +y++e+ l      d+  +    +a+     +   +++l++ +   ++++++ ++  
     KKY18925.1 201 ----AFLPPFVEAAG--------VFTFGEVYSGGTEDLCRYQQENLLAGL--PDYLEYFPLIRAF-----TLGLMRELADQVVATRESCTD-VSVL 276
                    ....********999........89***********99999999888766..7888888777777.....34459***************9.9*** PP

                    EEES--TTS--HHHHTTSSTTTTHHHHHHHHHCCCTSSSEEEEETTCCCT----S CS
  Alpha-amylase 281 vtflgnHDqeRilsrlgddsaeaekklklaaillltlrGvpviYyGeEigmtggk 335
                      f +nHD +R++s + d        +k++++ +++++G+p iY+G+E+++tg +
     KKY18925.1 277 GSFSENHDLSRFASLTPDIT-----LAKNVLAYVILSDGIPTIYQGQEQHYTGDD 326
                    *****************999.....8**************************976 PP

>> DUF1966  Domain of unknown function (DUF1966)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.3   1.4e-29   1.3e-25       2      90 .]     374     461 ..     373     461 .. 0.99

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 1.4e-29
     DUF1966   2 lysdkstlalrKgpegsqvvtvlsnkGssgssytlslkssgyaagtevvdvlsCksvtvdssgeltvtmekGePrvlvpksklegsglC 90 
                 ly d+st+++rKg++++qvv+++sn+Gs g+ y+l ++  ++++gtevv+++sC+++t+   g++t  m kGeP  ++ + +++g+glC
  KKY18925.1 374 LYLDNSTYCTRKGSDDKQVVACFSNQGSTGGDYQLIVP-GAFEEGTEVVEIFSCNKTTASAGGNITAAMGKGEPMAWYSTVNMKGTGLC 461
                 89***********************************9.9************************************************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 3291.66
//
Query:       KKY18926.1  [L=535]
Description: putative protein disulfide-isomerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-62  208.2   7.3    1.1e-30  105.7   0.1    3.8  4  Thioredoxin    Thioredoxin
    5.3e-51  173.2   0.7      2e-38  132.2   0.3    3.3  3  Thioredoxin_6  Thioredoxin-like domain
    6.8e-12   45.1   0.9    1.7e-11   43.8   0.3    1.9  2  Calsequestrin  Calsequestrin
    1.1e-08   35.2   0.1     0.0048   17.1   0.0    3.0  2  Thioredoxin_7  Thioredoxin-like
    7.2e-08   32.7   0.0      0.015   15.6   0.0    3.9  4  Thioredoxin_8  Thioredoxin-like
    2.5e-07   30.7   0.2      0.024   14.5   0.0    2.8  2  AhpC-TSA       AhpC/TSA family
    8.8e-07   29.4   0.7     0.0078   16.7   0.1    3.1  2  Thioredoxin_2  Thioredoxin-like domain
    0.00082   19.1   3.0          2    8.1   0.0    3.5  3  Redoxin        Redoxin
     0.0011   18.4   1.4        1.4    8.2   0.0    3.1  3  OST3_OST6      OST3 / OST6 family, transporter family
  ------ inclusion threshold ------
        0.2   11.8   4.6          3    8.0   0.1    4.0  3  Thioredoxin_4  Thioredoxin
       0.21   11.3   0.0       0.41   10.3   0.0    1.5  1  DUF5484        Family of unknown function (DUF5484)
       0.41   11.2   5.8         46    4.6   0.1    4.0  2  YtxH           YtxH-like protein


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7   0.1   7.1e-34   1.1e-30       2     102 ..      23     123 ..      22     124 .. 0.97
   2 ?   -1.3   0.1       1.5   2.2e+03      58     100 ..     179     221 ..     131     224 .. 0.56
   3 !    9.3   0.2   0.00073       1.1      39     102 ..     265     333 ..     260     334 .. 0.75
   4 !   95.4   0.0   1.2e-30   1.7e-27       2     103 .]     357     460 ..     356     460 .. 0.93

  Alignments for each domain:
  == domain 1  score: 105.7 bits;  conditional E-value: 7.1e-34
                  EEESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT.TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHH CS
  Thioredoxin   2 vlvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd.kvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekekla 98 
                  v++l++++F++ v++ ++lvl eF+ApwCghCkalaPe++++a++lk+ ++ l+kvd++e++dl+k+y+veg+Pt+k+f+  +++k y+gar++ +++
   KKY18926.1  23 VHSLKTDTFKDFVKE-HDLVLAEFFAPWCGHCKALAPEYDEAATTLKEkNIPLVKVDCTEEADLCKEYGVEGYPTVKVFRGLDNIKPYVGARKAPAII 119
                  678999********9.********************************9************************************************9 PP

                  HHHH CS
  Thioredoxin  99 aflk 102
                  ++++
   KKY18926.1 120 SYMT 123
                  9987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
                  TTTSHHHHHHTT-SSSSEEEEEETTE.EEEEEESS-HHHHHHHH CS
  Thioredoxin  58 vdenedlakkyevegiPtlklfkngk.evkkyegarekeklaaf 100
                  +++ + lak  +v++ P ++l+k  +     ++ a ek+++++f
   KKY18926.1 179 ATSDAALAKAEGVKQ-PSVVLYKTFDeGKTVFSDAFEKDAIESF 221
                  344455555555553.6666666655233445555666666665 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00073
                  HHHHHHHHCTTTSEEEEEETTTSHHHHHHT..T-SSSSEEEEEETTE...EEEEEESS-HHHHHHHHHH CS
  Thioredoxin  39 eleklaeelkdkvklakvdvdenedlakky..evegiPtlklfkngk...evkkyegarekeklaaflk 102
                   l+ +a+++k+k+ +a +d+++   +a ++  ev   P++ + +  k    + + + + +k+++a+f+k
   KKY18926.1 265 ALKPVAKDYKGKINFATIDAKAFGAHAGNLnlEVGKWPAFAIQETVKnqkFPYSQDKKITKKEIAKFVK 333
                  677899****************99999865116889****99654442115566667788888988887 PP

  == domain 4  score: 95.4 bits;  conditional E-value: 1.2e-30
                  EEESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT...TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTE..EEEEEESS-HH CS
  Thioredoxin   2 vlvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd...kvklakvdvdenedlakkyevegiPtlklfkngk..evkkyegarek 94 
                  v+v++++++++ v +++k+vl+eFyApwCghCk+laP++e+lae ++    +v++akvd+++n d++++  ++g+Pt+kl+k+g   ++ +y+g r+ 
   KKY18926.1 357 VAVVVAHTYKDIVLDDDKDVLIEFYAPWCGHCKSLAPKYEELAELFAPfskQVTIAKVDATAN-DVPDE--IQGFPTIKLYKAGSkaSPVDYSGPRSV 451
                  67888999***********************************99877777**********99.78877..*************978889******** PP

                  HHHHHHHHH CS
  Thioredoxin  95 eklaaflkk 103
                  ++l++f+++
   KKY18926.1 452 DDLVKFIQE 460
                  ******985 PP

>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   3.9e-09   5.8e-06       9     109 ..      57     160 ..      53     162 .. 0.86
   2 !  132.2   0.3   1.3e-41     2e-38       3     184 .]     155     334 ..     153     334 .. 0.92
   3 !   13.8   0.0   2.7e-05      0.04      37      75 ..     424     462 ..     389     472 .. 0.64

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 3.9e-09
                    HHHHHHHTTT-T.T....SEEEEE--HHHHHHTT--S.SEEEEEETTTTEEEEEETHT--HHHHHHHHHHH---SEEE-SHHHHHHHHTSS--EEE CS
  Thioredoxin_6   9 seiFekvakelkgd....vrfgvtkskevadklgvke.pavllfrkfdeekvkydgekitvddlkkfieknslplvreltpenaeelfeeglppll 99 
                    + ++ ++a+ lk++    v + +t ++++++++gv++ p+v++fr+ d+ +  y g+  ++  + + ++k+ lp v  lt e++ee+ + ++ +++
     KKY18926.1  57 APEYDEAATTLKEKniplVKVDCTEEADLCKEYGVEGyPTVKVFRGLDN-IKPYVGA-RKAPAIISYMTKQALPSVSPLTTESLEEFKTADKIVVV 150
                    56788999999988877778889999********************655.89****8.89****************************99988888 PP

                    EEEE-TTSTT CS
  Thioredoxin_6 100 llflkkddee 109
                     +f   d+++
     KKY18926.1 151 GYFAADDKTS 160
                    8888655444 PP

  == domain 2  score: 132.2 bits;  conditional E-value: 1.3e-41
                    -STSTHHHHHHHHTTT-T.TSEEEEE--HHHHHHTT--SSEEEEEETTTTEEEEEETHT--HHHHHHHHHHH---SEEE-SHHHHHHHHTSS--EE CS
  Thioredoxin_6   3 dkdkeeseiFekvakelkgdvrfgvtkskevadklgvkepavllfrkfdeekvkydgekitvddlkkfieknslplvreltpenaeelfeeglppl 98 
                      dk+  e+F++va+ l+ d+ fg+t+++++a++ gvk p+v+l+++fde k+ ++++ +++d +++f +++s plv+e+ pe++  +++ g+p  
     KKY18926.1 155 ADDKTSNETFSSVAEALRDDYLFGATSDAALAKAEGVKQPSVVLYKTFDEGKTVFSDA-FEKDAIESFAKTASTPLVGEVGPETYAGYMSAGIP-- 247
                    5688999***********99*************************************8.***********************************.. PP

                    EEEEE-TTSTTHHHHHHHHHHHHHHTTTT-EEEEEETTGGHHHHHHTT--GGG-SEEEEEESSSS-EEEET..TSS--HHHHHHHHHH CS
  Thioredoxin_6  99 lllflkkddeeteklkkaiekvakefkdkinfaladaksfkrpleylglsssdlPvivivdsashkykypp..kdefspeklkeFlkd 184
                    l++++ +++ee ++l++a++ vak++k+kinfa++dak+f+     l+l   + P+++i ++ +++ k+p+  ++ ++++++ +F+k+
     KKY18926.1 248 LAYVFAETPEERAELSEALKPVAKDYKGKINFATIDAKAFGAHAGNLNLEVGKWPAFAIQETVKNQ-KFPYsqDKKITKKEIAKFVKE 334
                    44444469**************************************************99977766.455445889**********85 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 2.7e-05
                    TT--SSEEEEEETTTT.EEEEEETHT--HHHHHHHHHHH- CS
  Thioredoxin_6  37 lgvkepavllfrkfde.ekvkydgekitvddlkkfiekns 75 
                        +p+++l+++ ++ ++v+y+g   +vddl+kfi++n 
     KKY18926.1 424 EIQGFPTIKLYKAGSKaSPVDYSGP-RSVDDLVKFIQENG 462
                    33356*******9655588888886.9***********96 PP

>> Calsequestrin  Calsequestrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.3   1.1e-14   1.7e-11      85     302 ..      63     275 ..      23     288 .. 0.85
   2 ?   -0.4   0.0      0.31   4.6e+02     188     249 ..     267     335 ..     261     355 .. 0.63

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 1.1e-14
                    HHHHCCCCTEEEEEEETTTTHHHHHCCT--STTEEEEEET.TCEEEE-S--SHHHHHHHHHCCCS-SEEEE-SHHHHHHHHH--SS-EEEEE-S-T CS
  Calsequestrin  85 vaqvledkdvgfvlvdakkeaklakklgldevdslyvlkg.devieydgefaadvlveflldlledpveliesklelqaferiedeikligyfksk 179
                    +a  l++k++ +v vd+  ea l+k  g++   ++ v++g d++  y g   a +++ ++       v  + ++  l+ f+   d+i ++gyf ++
     KKY18926.1  63 AATTLKEKNIPLVKVDCTEEADLCKEYGVEGYPTVKVFRGlDNIKPYVGARKAPAIISYMTKQALPSVSPLTTE-SLEEFK-TADKIVVVGYFAAD 156
                    7899************************************566667**************99888788776654.467775.579*********** PP

                    TSHHHHHHHHHHHCCTTTSEEEEE--HHHHHHCT--TTEEEEE-TT-SS-EE-SSSS--HHHHHHHHHHCSS-SEEE--CCCHHHHHHS-S.TSEE CS
  Calsequestrin 180 eseyykafeeaaeefqpyikffatfdkkvakklslklnevdfyeafmeepvaipdkpyseeelvefvkehrrstlrklkpedmyetweddl.dgih 274
                    +     +f   ae ++    f at d  +ak   +k   v +y++f +e  ++    + ++ +  f k    + + ++ pe     +   +  gi 
     KKY18926.1 157 DKTSNETFSSVAEALRDDYLFGATSDAALAKAEGVKQPSVVLYKTF-DEGKTVFSDAFEKDAIESFAKTASTPLVGEVGPET----YAGYMsAGIP 247
                    *****************99**************************9.566666677788999999***99999999999975....3333414777 PP

                    EE.EE--TTSHHHHHHHHHHHHHHHHCCC CS
  Calsequestrin 275 iv.afaeeadpdgyefleilkavardnte 302
                    +   fae +  +  e+ e lk va+d   
     KKY18926.1 248 LAyVFAE-TPEERAELSEALKPVAKDYKG 275
                    6514555.445678999*******99765 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.31
                    HHHHHCCTTTSEEEEE--HHHHHHCT--TT.EEEEE-TT.-SS-EE-S......SSS--HHHHHHHHHHC CS
  Calsequestrin 188 eeaaeefqpyikffatfdkkvakklslkln.evdfyeaf.meepvaip......dkpyseeelvefvkeh 249
                    +  a++++  i+ fat+d k     + +ln ev  + af ++e v         dk  +++e+ +fvke 
     KKY18926.1 267 KPVAKDYKGKIN-FATIDAKAFGAHAGNLNlEVGKWPAFaIQETVKNQkfpysqDKKITKKEIAKFVKEF 335
                    556666777666.477777765555555554666666663455554321112227777888999999997 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.7e-05     0.026      20      81 ..      41     100 ..      34     102 .. 0.82
   2 !   17.1   0.0   3.2e-06    0.0048      15      81 ..     371     434 ..     364     436 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.7e-05
                    EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT-.--SSEEEEE CS
  Thioredoxin_7  20 vlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanilelde.qgvPvvafl 81 
                    vl  f a wc++C+al+ +  ++ +  +   +++ l++vd te+ +   + ++ +g+P+v ++
     KKY18926.1  41 VLAEFFAPWCGHCKALAPEYDEAATTLK--EKNIPLVKVDCTEEADLC-KEYGvEGYPTVKVF 100
                    778899*************999977755..6************99955.43335779999877 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 3.2e-06
                    HHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT-.--SSEEEEE CS
  Thioredoxin_7  15 ergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanilelde.qgvPvvafl 81 
                     + k+vl+ f a wc++C+ l+   ++  e+ a +++++   +vd t +d     +de qg+P++ ++
     KKY18926.1 371 DDDKDVLIEFYAPWCGHCKSLAPKYEELAELFAPFSKQVTIAKVDATANDV----PDEiQGFPTIKLY 434
                    5789******************999999777777*********99998884....5677888888666 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     1e-05     0.015       3      52 ..      40      88 ..      38      90 .. 0.88
   2 ?    2.8   0.0       0.1   1.5e+02      68      88 ..      79      99 ..      74     105 .. 0.81
   3 ?   -1.1   0.0       1.6   2.4e+03       2      31 ..     146     176 ..     144     221 .. 0.61
   4 !   11.0   0.0   0.00027       0.4       4      41 ..     376     414 ..     373     426 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1e-05
                   EEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHH CS
  Thioredoxin_8  3 vvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefek 52
                   +vl  f+a wc +cka  p+ +e  ++lk +k++ +v v + ++ + +++
     KKY18926.1 40 LVLAEFFAPWCGHCKALAPEYDEAATTLK-EKNIPLVKVDCTEEADLCKE 88
                   67777***********************9.6*******999988776666 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.1
                   TT-HHHHTT-S--TT-SEEEE CS
  Thioredoxin_8 68 dkkrnklkkkynvkaiPtlvv 88
                     +   l+k+y+v+++Pt+ v
     KKY18926.1 79 CTEEADLCKEYGVEGYPTVKV 99
                   456789************976 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.6
                    SEEEE.EE--SSSHHHHHHHHHHHHHHHHHH CS
  Thioredoxin_8   2 kvvlL.yfgaswcppckaftpklkelyeklk 31 
                    k+v++ yf+a++  + ++f +   +l +++ 
     KKY18926.1 146 KIVVVgYFAADDKTSNETFSSVAEALRDDYL 176
                    5566615555555555555555556677666 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00027
                    EEEEE--SSSHHHHHHHHHHHHHHHHHHH.TTSEEEEEE CS
  Thioredoxin_8   4 vlLyfgaswcppckaftpklkelyeklkk.kkkveivyv 41 
                    vl+ f+a wc +ck   pk  el e +   +k+v i  v
     KKY18926.1 376 VLIEFYAPWCGHCKSLAPKYEELAELFAPfSKQVTIAKV 414
                    8899*******************9999867788877655 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.6e-05     0.024      19      72 ..      30      84 ..      15      96 .. 0.81
   2 !   13.0   0.0   4.7e-05      0.07      22      68 ..     372     415 ..     354     426 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.6e-05
                ECHHH.TTSEEEEE.EESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHH CS
    AhpC-TSA 19 slsdy.kgkpvvlf.fypkdwcpvCttelpalaklyeefkergvevigvsvdspes 72
                +++d+ k + +vl  f++  wc +C++ +p++ +++  +ke+++ ++ v ++++++
  KKY18926.1 30 TFKDFvKEHDLVLAeFFAP-WCGHCKALAPEYDEAATTLKEKNIPLVKVDCTEEAD 84
                5678876666666615555.***************************999987765 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 4.7e-05
                 HHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESS CS
    AhpC-TSA  22 dykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvd 68 
                 d  +k v++ fy+  wc +C+  +p++++l+e f+    +v +  vd
  KKY18926.1 372 D--DKDVLIEFYAP-WCGHCKSLAPKYEELAELFAPFSKQVTIAKVD 415
                 3..466********.*******************9776666665555 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   5.2e-06    0.0078       4      90 ..      37     103 ..      35     122 .. 0.80
   2 !    9.9   0.1   0.00066      0.99       5      45 ..     373     408 ..     369     460 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.2e-06
  Thioredoxin_2   4 ngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgk 90 
                    ++  vl+ f +p+C+ Ck+l  e +e      +     lk++ ++  v+++c++e             l ++ygv+g Pt+ ++ g 
     KKY18926.1  37 EHDLVLAEFFAPWCGHCKALAPEYDEA---ATT-----LKEK-NIPLVKVDCTEEAD-----------LCKEYGVEGYPTVKVFRGL 103
                    67789999**************99999...333.....6666.89*********995...........************9887776 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00066
  Thioredoxin_2   5 gkpvlvvftdpdCpyCkklkkelkelddvtvrvllfp.lkps 45 
                     k vl+ f++p+C+ Ck l  + +el ++      f+ ++++
     KKY18926.1 373 DKDVLIEFYAPWCGHCKSLAPKYEELAEL------FApFSKQ 408
                    6899****************999999444......2225555 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0038       5.6      22      65 ..      30      74 ..      17      89 .. 0.81
   2 ?    2.6   0.1     0.068     1e+02      51     104 ..     135     192 ..     125     215 .. 0.80
   3 !    8.1   0.0    0.0014         2      28      59 ..     373     403 ..     356     421 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0038
                EHHH.HTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTE CS
     Redoxin 22 slse.fkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdv 65
                + ++ +k++ +v+  + + +c+ C+a +p+ ++ a+ lkek++  
  KKY18926.1 30 TFKDfVKEHDLVLAEFFAPWCGHCKALAPEYDEAATTLKEKNIPL 74
                4566778899888666666**********999998888*999765 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.068
                 HHTHHHHHHCSTTTEEEEEESSSHH....HHHHHHHTT-TSEEEE-TTSHHHHHTT-T CS
     Redoxin  51 leklaellkekgvdvvavvadndaf....vkefwgkeglkfpvlsDgsaaftkalGlr 104
                  e l+e++ +  + vv+  a++d       +++++++  ++++ +  +aa++ka G++
  KKY18926.1 135 TESLEEFKTADKIVVVGYFAADDKTsnetFSSVAEALRDDYLFGATSDAALAKAEGVK 192
                 5678899999999999999999999555555555558889999888889999999965 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0014
                 TSEEEEEEESTTT-HHHHHTHHHHHTHHHHHH CS
     Redoxin  28 gkkvvvnfvpgafcPtCsaehpyleklaellk 59 
                 +k v++ f++  +c+ C+  +p+ e+lael++
  KKY18926.1 373 DKDVLIEFYAP-WCGHCKSLAPKYEELAELFA 403
                 799********.**********9999999875 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00092       1.4      46     104 ..      50     102 ..      21     131 .. 0.90
   2 ?    1.9   0.2     0.078   1.2e+02      68     145 ..     271     346 ..     255     364 .. 0.68
   3 !    5.4   0.0    0.0069        10      46     141 ..     385     466 ..     379     473 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00092
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfpp 104
                 C  C+ ++pe++  a   +++      ++  +kvd  e  d+ +++g++  P + +f  
  KKY18926.1  50 CGHCKALAPEYDEAATTLKEK------NIPLVKVDCTEEADLCKEYGVEGYPTVKVFRG 102
                 99*************999988......7*************************999976 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.078
   OST3_OST6  68 kskskklfFakvdfdegkdvFqk..lglnsaPhlllfppkkgpkeskkkdtydfsrggf.daealakfisertg..vkirikr 145
                 k+ + k+ Fa++d +          l++ + P + + +         k+++++ s+ ++ + +++akf++e ++   + +ik 
  KKY18926.1 271 KDYKGKINFATIDAKAFGAHAGNlnLEVGKWPAFAIQETV-------KNQKFPYSQDKKiTKKEIAKFVKEFVDgkIEPSIKS 346
                 5667788899999988555555512555677887777662.......34556666665559999*****99998555555555 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0069
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkgpkeskkkdtydfsrggfdaealakfisertgvki 141
                 C  C+ ++p++e +a+ +       sk++  akvd   + dv  +  ++  P + l+++ + ++   ++ +y       ++++l+kfi+e+ ++++
  KKY18926.1 385 CGHCKSLAPKYEELAELFAPF----SKQVTIAKVDATAN-DVPDE--IQGFPTIKLYKAGS-KA---SPVDYSG---PRSVDDLVKFIQENGKHQV 466
                 99***************9877....69********9544.44444..78899999999933.22...4555554...4588888999988877665 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2      0.16   2.3e+02      16      37 ..      41      62 ..      36      99 .. 0.83
   2 ?    0.3   0.0      0.47     7e+02      33      75 ..     326     367 ..     321     369 .. 0.86
   3 ?    8.0   0.1     0.002         3      12      76 ..     372     443 ..     370     523 .. 0.62

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.16
                   EEEEEE-TT-HHHHHHHHHHHH CS
  Thioredoxin_4 16 tvieyedlrCphCakfeeevek 37
                   ++ e+    C hC++++ e+ +
     KKY18926.1 41 VLAEFFAPWCGHCKALAPEYDE 62
                   78999*********99887753 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.47
                    HHHHHHHHHHHHTTSEEEEEEE-..---STTTHHHHHHHTT-- CS
  Thioredoxin_4  33 eeveklleeyidtGkvkfiirdfpldkekeslkaamaarcage 75 
                    +e+ k+++e++ +Gk++  i+  p+++++e   a+++a+ +++
     KKY18926.1 326 KEIAKFVKEFV-DGKIEPSIKSEPIPEKQEGPVAVVVAHTYKD 367
                    56779999996.6************999999999999999876 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.002
                    T-SEEEEEEE-TT-HHHHHHHHHHHHH......HHHHHHTTSEEEEEEE-..---S.TTTHHHHHHHTT--T CS
  Thioredoxin_4  12 dApvtvieyedlrCphCakfeeevekl......leeyidtGkvkfiirdfpldkek.eslkaamaarcagee 76 
                    d + ++ie+    C hC+ ++ ++e+l      +++ +   kv  ++ d+p + ++   +k   a + a ++
     KKY18926.1 372 DDKDVLIEFYAPWCGHCKSLAPKYEELaelfapFSKQVTIAKVDATANDVPDEIQGfPTIKLYKAGSKASPV 443
                    67899**************99998876111222345666667777777777666665555555555555555 PP

>> DUF5484  Family of unknown function (DUF5484)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00028      0.41      27      41 ..     450     464 ..     442     466 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00028
     DUF5484  27 svnDWikfiDenGnW 41 
                 sv+D +kfi enG  
  KKY18926.1 450 SVDDLVKFIQENGKH 464
                 9************75 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.031        46      19      53 ..     255     318 ..     244     341 .. 0.74
   2 ?    4.5   1.5     0.034        50      32      74 ..     471     517 ..     398     518 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.031
        YtxH  19 APksGketRkdlkekaddlkekakelleeakeka.............................k 53 
                 +P+   e+ + lk  a+d+k k++ ++ +ak  +                             +
  KKY18926.1 255 TPEERAELSEALKPVAKDYKGKINFATIDAKAFGahagnlnlevgkwpafaiqetvknqkfpyS 318
                 599999******************9999999988888888888775555555555554444440 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.034
        YtxH  32 ekaddlkekakelleeakeka....kekaedlkekvkekadelkekv 74 
                 ++a+d+ e + ++ e+++++a     +++e +ke++k+ a+e++e +
  KKY18926.1 471 NRAEDSDEEMPDVEETMAKQApaatPSEGEGVKESIKSAASEAVEAA 517
                 44666667777777777777788889999999999999999998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       934  (0.0520944); expected 358.6 (0.02)
Passed bias filter:                      713  (0.039768); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3539.26
//
Query:       KKY18927.1  [L=507]
Description: putative autophagy-related protein 22-2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.9e-181  601.5   8.3   1.3e-180  601.2   8.3    1.0  1  ATG22     Vacuole effluxer Atg22 like
    1.1e-05   24.6  55.6    1.3e-05   24.3  18.0    3.1  3  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.053   13.3   1.4       0.37   10.6   0.1    2.7  2  DUF2976   Protein of unknown function (DUF2976)


Domain annotation for each model (and alignments):
>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  601.2   8.3  2.1e-184  1.3e-180      56     477 ..      10     479 ..       4     480 .. 0.97

  Alignments for each domain:
  == domain 1  score: 601.2 bits;  conditional E-value: 2.1e-184
       ATG22  56 eqcvvkflgieidtaSfvlytfslsvllqavvvislsglADygnyrknlLlafaligslstilfllvtpkkYllgavlyivsntcfgaslvllnsfLPl 154
                  +cvv++lg+ei+taSf++ytfs+sv++qa+++is+sg+AD+g++rk++Ll+fa++g+++t+lfl +t++ +l+ga+l+i+sntcfgas+vllns+LP+
  KKY18927.1  10 AACVVYILGAEINTASFAMYTFSISVAVQALLIISMSGAADHGRFRKTFLLVFAFLGAIATMLFLPITSEVFLVGALLAIISNTCFGASFVLLNSYLPV 108
                 48************************************************************************************************* PP

       ATG22 155 lvredpelqeaeeeeeee......................................eessetaeeeeskelklstriSslGlaigylgailvqiisili 215
                 lvr +p++q ++ ++++                                       + + + + + +s+elklst+iS++G++igy++++l+q++ il+
  KKY18927.1 109 LVRYHPTVQMEKWRAARRhsmaegetdngrrpaedslentaheatslllpddgldeTMPMDPSPAANSPELKLSTKISAYGIGIGYVAGVLLQTLAILV 207
                 ********6665555555678899******************************9888888899999******************************** PP

       ATG22 216 vialgstatfslrlalllvGlwWliftipaalllkkrpgpplp......kglsyliygwkslgrtlkqarklkdvllfLvawfllsdgiatvsstavlf 308
                 v+++gst tfslrl+l+l+GlwW+if+ipaal+l++rpgpplp      ++  y+ y+w sl++t+k+ar+lkd+llfL++wfl+sd+iatvs+ta+lf
  KKY18927.1 208 VVTTGST-TFSLRLVLFLIGLWWFIFSIPAALWLRPRPGPPLPatgirhNWIGYTEYAWISLWKTIKKARRLKDMLLFLAGWFLVSDSIATVSGTAILF 305
                 *******.******************************************************************************************* PP

       ATG22 309 aktelkmstaklillsivaviaavlGaflwplvsrrlnlktkktllaiivlfeliplyGllGii.....lgkiGlkqpwEfyvlavvyglvlgglssys 402
                 akt l+m++a+l+l++++a++a+v+Gaf+w+++sr lnl++++t++a+i+lfe+iplyGllG+i      g++Gl+qpwE+y+l+++yglvlgglssy+
  KKY18927.1 306 AKTSLGMTPAALALINVIATVAGVFGAFSWSYFSRLLNLRASRTIVACICLFEIIPLYGLLGFIpairrYGTFGLQQPWEMYPLGAIYGLVLGGLSSYC 404
                 *************************************************************************************************** PP

       ATG22 403 RslfseLiPrGkEaaFFsLyaitdkgssvigplivglItDrtgnirsafvflavLlvvplpllllvdvergrrea 477
                 Rs+f+eLiP+G EaaF++Lya+tdkgss++gp+ivg+ItDr+g+ir+afvflavL+++plpl+llvdv+rg+r+a
  KKY18927.1 405 RSFFGELIPPGFEAAFYALYAVTDKGSSIFGPAIVGAITDRYGEIRPAFVFLAVLIFLPLPLMLLVDVDRGKRDA 479
                 *************************************************************************98 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3  10.9   8.1e-05      0.49     244     336 ..      28     115 ..      11     118 .. 0.61
   2 !    6.0  25.5   0.00081       4.8     129     290 ..     189     362 ..     177     372 .. 0.61
   3 !   24.3  18.0   2.1e-09   1.3e-05      16     178 ..     300     477 ..     294     500 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 8.1e-05
       MFS_1 244 llaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagt 336
                 +++   ++++ +v a l +  +  +d+ gr r ++l ++++l a + +++l+ ts+ +l+ ++l++i+  ++g  f++l++++  l+  +++ t
  KKY18927.1  28 MYT---FSISVAVQALLIISMSGAADH-GRFRKTFLLVFAFLGAIATMLFLPITSEVFLVGALLAIISNtCFGASFVLLNSYLPVLV--RYHPT 115
                 233...444444444444445555676.555555555555555555555555555555555588888888***********999888..66655 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.00081
       MFS_1 129 gfslGailgpllgg..llasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp........awkallkdpvl.. 209
                 g+++G++ g ll    +l+           r+v +++++  +++ + ++l+l+ +p ++ + ++++        +++         +wk ++k + l  
  KKY18927.1 189 GIGIGYVAGVLLQTlaILVVVTTgsttfsLRLVLFLIGLWWFIFSIPAALWLRPRPGPPLPATGIRH-------NWIGyteyawisLWKTIKKARRLkd 280
                 6677777777777743222222223333366666666666666655333333333333333333333.......2222555666669999999998844 PP

       MFS_1 210 .willialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgr.rrrlllallllllaalg 290
                  +++l++++l++  +++++ +  l++++ lg++    ++l+  ++ ++g+++a+ ++++s+ l+    r+++a+++l+ +  +
  KKY18927.1 281 mLLFLAGWFLVSDSIATVSGTAILFAKTSLGMT-PAALALINVIATVAGVFGAFSWSYFSRLLNLrASRTIVACICLFEIIPL 362
                 3379999999988888899999999********.5777777888888888889999999976444234444444444444444 PP

  == domain 3  score: 24.3 bits;  conditional E-value: 2.1e-09
       MFS_1  16 gpalplalaedlgispseigllltlyalgaavaslplGrlsdrfG..rrrvlllglllfalg.lllll.f..a.........sslwlllvlrvlqGlga 99 
                 g+a+  + +++lg++p+++ l+ ++ +++ +++++ ++++s  +   + r++++++ lf +  l+ ll f  a         ++ w ++ l ++ Gl  
  KKY18927.1 300 GTAIL-FAKTSLGMTPAALALINVIATVAGVFGAFSWSYFSRLLNlrASRTIVACICLFEIIpLYGLLgFipAirrygtfglQQPWEMYPLGAIYGLVL 397
                 34444.8899******************************99876424457777777777775777778755255555566666778************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.Wravfyilaivsllafvlfllllpeeppe 178
                 g+l + + +++ ++ p+   +  ++l++++   ++i+gp++ g++++ +g  r +f++la++ +l + l+ll+ +++ ++
  KKY18927.1 398 GGLSSYCRSFFGELIPPGFEAAFYALYAVTDKGSSIFGPAIVGAITDRYGeIRPAFVFLAVLIFLPLPLMLLVDVDRGKR 477
                 **********************************************88888*************9866644444444333 PP

>> DUF2976  Protein of unknown function (DUF2976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   6.2e-05      0.37       4      51 ..     169     216 ..     166     218 .. 0.84
   2 ?    0.4   0.1     0.095   5.7e+02      31      52 ..     310     331 ..     292     358 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.2e-05
     DUF2976   4 veaPssgekggdllelikgylkdgvillgLvlaavaflaVakaalkkf 51 
                    P  ++ +  l + i++y+  +  ++g++l ++a+l+V+++  ++f
  KKY18927.1 169 DPSPAANSPELKLSTKISAYGIGIGYVAGVLLQTLAILVVVTTGSTTF 216
                 5566677777788889*************************9988888 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.095
     DUF2976  31 lgLvlaavaflaVakaalkkfn 52 
                 lg+  aa+a+++V+ ++ ++f 
  KKY18927.1 310 LGMTPAALALINVIATVAGVFG 331
                 68888999*****999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3421.81
//
Query:       KKY18928.1  [L=1108]
Description: putative rna polymerase ii holoenzyme mediator complex component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-62  207.9   0.0    1.6e-61  207.1   0.0    1.4  1  Med14     Mediator complex subunit MED14
  ------ inclusion threshold ------
      0.013   15.7   0.1         10    6.5   0.0    2.7  2  HTH_18    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Med14  Mediator complex subunit MED14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.1   0.0   1.8e-65   1.6e-61       1     191 []      80     296 ..      80     296 .. 0.99

  Alignments for each domain:
  == domain 1  score: 207.1 bits;  conditional E-value: 1.8e-65
                 EEEHHHHHHHHHHHHHHHHHHHHHHCT............................-TS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGHHHCCHHHH CS
       Med14   1 lvpLselverlvqasykeLselaetlp............................tsesdlerkrellkfaqktrqqfvKllvlvkWsrkaekvsklid 71 
                 +vpL+ l++r +q++++ Lsel+++l+                             se +l++k ++lk+a+++r+ f+Kl+vl+ Wsr++++++k+id
  KKY18928.1  80 MVPLGSLISRQAQECWNGLSELVNELAdlpvstvssqpngvggrvipqpgmpwgdMSEANLQKKERILKWAHDQRAFFIKLMVLSGWSRTMPEMHKAID 178
                 59************************************************************************************************* PP

                 HHHHHHHHHHCCCCCHCCCCCHHHHHHCCHHHHHHHHCHHCHCTTCHCHCCCCCCSCSH.--S---SHHHHHHHHHHHHHHHHHHHHBS---CCGSSEE CS
       Med14  72 llaflrqqneafedaadalkelkeslanaklpnpdlktAleVLstGrysrlpslikeey.ppkpltakeilktlkdlnelirlrLalhekiPkefknye 169
                 + ++lr+q +++++a d +  ++++l  a++pnpdlktA+eVL tGr   +p+l+   y +pkpl+++++lktl+ +n +i  rLal ++iP +f+ y 
  KKY18928.1 179 MSNWLREQLFYYDNACDLMGFMRRDLVFAQIPNPDLKTAIEVLATGRSLSFPDLG---YtEPKPLSPEKTLKTLRHINSIICSRLALDDDIPLAFQIYD 274
                 *******************************************************...559************************************** PP

                 CCTCEEEESSSBECCC-EECEC CS
       Med14 170 ikdGrvtftvpgeFevdLtlad 191
                 i+dGrvtftvp eF++dL++ad
  KKY18928.1 275 IHDGRVTFTVPSEFSLDLSVAD 296
                 *******************985 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0011        10      11      41 ..     355     385 ..     353     406 .. 0.87
   2 ?    6.3   0.0    0.0013        12      32      79 ..     548     592 ..     524     594 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0011
                 HHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH CS
      HTH_18  11 tLqrlfkrvlgltpkeylrrlRlerArrlLl 41 
                 +L+ lfk+ l ++ +++  +lR+e ++r L+
  KKY18928.1 355 KLNILFKQALEMSRSQWSEQLRVEMIHRTLV 385
                 68889***********************996 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHH CS
      HTH_18  32 RlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyr 79 
                 Rl   r  L+  +++++a+iA  +G+++l++F      l ++ P+ ++
  KKY18928.1 548 RLALLRC-LI--ADQDLATIASSAGWEHLTSFKPSQTDLRQMFPKSTL 592
                 3444444.33..69******************7666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.47
# Mc/sec: 7074.49
//
Query:       KKY18929.1  [L=668]
Description: hypothetical protein UCRPC4_g04689 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.50
# Mc/sec: 4040.28
//
Query:       KKY18930.1  [L=387]
Description: hypothetical protein UCRPC4_g04690 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-05   24.8   0.8    7.9e-05   22.2   0.0    2.6  3  Glyco_hydro_16  Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   4.4e-09   7.9e-05      29      80 ..     109     163 ..      64     202 .. 0.77
   2 ?   -2.4   0.0      0.15   2.7e+03     114     125 ..     230     241 ..     225     244 .. 0.85
   3 ?   -1.4   1.1      0.08   1.4e+03      88     127 ..     313     357 ..     294     362 .. 0.64

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 4.4e-09
                     EEEEEEEECCEESSEEEEEEEE..---STTEEEEEEEETGGTSTTEEEEE.EEET CS
  Glyco_hydro_16  29 esgsrikskksflyGkvearik..aaksaGvvtafylssedekahdEiDi.EflG 80 
                     + + r++s+++f++G + a+i   ++   G+++a++    +++  +EiDi E + 
      KKY18930.1 109 RPSVRLQSTQTFTHGLFIADIAhmPGGVCGIWPALWSYGPNWPYGGEIDIlEQVN 163
                     66899****************98788889********9999*********99873 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.15
                     EEEEEEETTEEE CS
  Glyco_hydro_16 114 tYaieWtpdkik 125
                      Ya+eWt++ ik
      KKY18930.1 230 VYAMEWTSSAIK 241
                     599****99997 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.08
                     EEEEBTTBSGE.....EEEEETSS-TTTS-EEEEEEEETTEEEEE CS
  Glyco_hydro_16  88 tnvygkGkgkr.....ekrlslwfdptedfHtYaieWtpdkikfy 127
                     + + +kG g++     +++ +  ++ ++++ +Y  + ++d+ +fy
      KKY18930.1 313 QSLSTKGRGQQydkqhNFNDKNFDNVEQHYDHYDQKFNNDQHDFY 357
                     555567777755442233333356778889999999999888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2581.41
//
Query:       KKY18931.1  [L=380]
Description: putative fe-containing alcohol [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-82  277.7   0.0    1.6e-82  277.3   0.0    1.0  1  Fe-ADH    Iron-containing alcohol dehydrogenase
    2.1e-06   27.6   0.1     0.0024   17.6   0.0    2.5  2  Fe-ADH_2  Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.3   0.0   1.7e-86   1.6e-82      69     355 ..      24     356 ..      20     363 .. 0.94

  Alignments for each domain:
  == domain 1  score: 277.3 bits;  conditional E-value: 1.7e-86
                 HHHHHHTTS-TT.--EEEEEESHHHHHHHHHHHHHTT........................--EEEEESS-S-S-TT-SEEEEE.-TTSEEEEE-..SS CS
      Fe-ADH  69 eveeaaalareegadvviavGGGsviDtAKaialllanpe..vedyl....gegkakkkkalpliaiPTtaGtGsevtplavitdeeegeklsifdpel 161
                 +v+ea+++a+ +g+d+++avGGGsviDtAK+++l++++p+  + d++    g+g + ++k  plia+PTtaGtGse+t++a+++  ++++k++i++++l
  KKY18931.1  24 HVKEAIDFAKPAGVDAFLAVGGGSVIDTAKLMNLYTEYPDadFLDFVnaplGKGLPIARKLKPLIAVPTTAGTGSETTGTAIFDLVSKKAKTGIAHRNL 122
                 79************************************96699999999999999999999************************999*********** PP

                 --SEEEEEHHHHHHS-HHHHHHHHHHHHHHHHHHHHH.H..................T---TTSSB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      Fe-ADH 162 lPdlaivDpeltltlPkrvtaatglDalahalEayvs.k..................kanplsdalaleairliaknleravadgedleareqmllast 241
                  P+l i+Dp  t t+P++v a++glD+l+h lE+ ++ +                  +anp+sd ++l a+r  +k+l+rav d++d ea ++mlla+t
  KKY18931.1 123 KPTLGICDPLNTRTMPSAVHASSGLDVLCHSLESWTAiPynertprpdnpikrpayqGANPISDIFSLNALRATVKYLPRAVCDPSDFEAQSEMLLAAT 221
                 *************************************66************************************************************ PP

                 HHHHHHHSS---HHHHHHHHHHC......CG..........GGGGS-HHHHHHHHH..........HHHHHHT...........T--HHHHHHHHHHHH CS
      Fe-ADH 242 laglafsnaglgavHalahalgal.....fg..........iphglanaillpavlrfnaeaaperlaqlaralgge....sdeeaaeeliealrellk 321
                 lag++f+nag++++H+++++++++      +          iphg+++a++ p+v++f+ +++p r+ q a+a+g +    ++++a e l eal e+l 
  KKY18931.1 222 LAGVGFGNAGVHLCHGMSYPISSQnpsgyKHpgysvpsssiIPHGVSVAVTAPSVFKFTSPSNPTRHLQAAEAFGVDisnvKASSAGEVLSEALAEFLV 320
                 ***********************87777501555566677799*******************************999***99999*************9 PP

                 HTT.---SHHHHT-TT-HHHHHHHHHT-T.SGGGGS CS
      Fe-ADH 322 elg.lptsLselgvdeedldklaeaalkd.rslann 355
                 +lg  p++L++lg++++dld+l++ +l + r l   
  KKY18931.1 321 KLGdQPRGLKSLGFSRQDLDQLVDGTLPQqRVLMLA 356
                 9984688********************996665554 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.7e-07    0.0024      64      95 ..      25      56 ..       7      63 .. 0.82
   2 !    7.6   0.0    0.0003       2.7     101     238 ..      86     245 ..      80     270 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.7e-07
    Fe-ADH_2 64 veklvealreketdlvvavGgGtiiDiakyvs 95
                v++ ++ ++++++d+++avGgG++iD+ak++ 
  KKY18931.1 25 VKEAIDFAKPAGVDAFLAVGGGSVIDTAKLMN 56
                55667788999******************986 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0003
    Fe-ADH_2 101 pyvsvpTaaSvDGfaspgas..lvvdgkkrtv.akaaaPlaviaDldvlaeAPrrllasGvGDllgkyt.ala.......dwklan............. 175
                 p+++vpT+a   + +  +a   lv +++k+ + +    P+  i D    ++ P++  as   D+l  +  +++       +                  
  KKY18931.1  86 PLIAVPTTAGTGSETTGTAIfdLVSKKAKTGIaHRNLKPTLGICDPLNTRTMPSAVHASSGLDVLCHSLeSWTaipynerT----Prpdnpikrpayqg 180
                 666666666655555544431133345555555444455555666666666666666655555555433122222333330....13333333343333 PP

    Fe-ADH_2 176 ..evseplaklsaamvqeaaeklvedkketealeellealalsgigisrpaSGsEHliSHaldml 238
                    +s+ +++++ + +++ + ++v d+ + ea +e+l a +l+g+g+ +++   +H +S  +   
  KKY18931.1 181 anPISDIFSLNALRATVKYLPRAVCDPSDFEAQSEMLLAATLAGVGFGNAGVHLCHGMSYPISSQ 245
                 3388999****************************************999999999888766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2607.08
//
Query:       KKY18932.1  [L=206]
Description: putative atp-dependent clp protease proteolytic subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-72  241.3   0.0    7.6e-72  241.0   0.0    1.0  1  CLP_protease  Clp protease
  ------ inclusion threshold ------
      0.059   12.9   0.0       0.09   12.3   0.0    1.3  1  HRXXH         Putative peptidase family
       0.14   12.4   0.0       0.22   11.7   0.0    1.3  1  DUF3993       Protein of unknown function (DUF3993)


Domain annotation for each model (and alignments):
>> CLP_protease  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.0   0.0   1.3e-75   7.6e-72       3     181 ..      16     199 ..      14     200 .. 0.96

  Alignments for each domain:
  == domain 1  score: 241.0 bits;  conditional E-value: 1.3e-75
                   SSECHHHHHHHHTTTEEEEES-BSHHHHHHHHHHHHHHHHH-SSS-EEEEEEE--B-HHHHHHHHHHHHHSSS-EEEEEEEEEETHHHHHHHTS-TT CS
  CLP_protease   3 geraydiysrllkeriiflgseiddevankiiaqLllLeaedpdkdillyinspGGsvtaglaIydtmqyikpdvsticlGlaaSmgslllaagekg 99 
                   g+ aydi+s+llkerii++gs idd+v++ ++aqLl Lea +p+k+i +yinspGGsvt+glaIydtmqyi+++v+t++lG aaS++slllaag++g
    KKY18932.1  16 GQYAYDIFSKLLKERIICIGSTIDDTVSSVVTAQLLHLEADNPEKEIWMYINSPGGSVTSGLAIYDTMQYITSPVHTVALGNAASAASLLLAAGSPG 112
                   6789********************************************************************************************* PP

                   GEEEETTEEEEES-TEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHT.....S-HHHHHHHHCSTEEEEHHHHHHHTSSSEE-SS CS
  CLP_protease 100 kRfalpnarimihqPlggaqgqasdieieaeellkikerlneilakhtg.....qslekiekdldrdtflsaeeAveyGLideviek 181
                   kR++lpn+ im+hqP+gg++g+a di+ +a+e+l+i+e+ln+i++kh g     +sl +iek l+rd+f++aeeA+e G +dev+ +
    KKY18932.1 113 KRYSLPNTSIMLHQPSGGFHGTAADIAVHAKEILRIREQLNKIYQKHFGiagkeKSLGEIEKLLERDYFMTAEEALELGVVDEVLAS 199
                   ***********************************************873333367889*************************976 PP

>> HRXXH  Putative peptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.5e-05      0.09      66     110 ..     135     179 ..     120     201 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.5e-05
       HRXXH  66 tvelaahardhllrfGnsseiykkyFGdaslaeviGvlekvvsad 110
                 ++ +a ha++ l    + ++iy+k+FG a   + +G +ek+++ d
  KKY18932.1 135 AADIAVHAKEILRIREQLNKIYQKHFGIAGKEKSLGEIEKLLERD 179
                 5689*****988888888*********************998865 PP

>> DUF3993  Protein of unknown function (DUF3993)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.7e-05      0.22      28      62 ..     143     181 ..     131     199 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.7e-05
     DUF3993  28 kevl...etlqsayeaqfslsekersleemievLeP.Yf 62 
                 ke+l   e l++ y+ +f + +ke+sl e++++Le  Yf
  KKY18932.1 143 KEILrirEQLNKIYQKHFGIAGKEKSLGEIEKLLERdYF 181
                 55542226799***********************84365 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1503.19
//
Query:       KKY18933.1  [L=630]
Description: hypothetical protein UCRPC4_g04655 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.67    9.6   5.3         25    4.5   0.0    3.3  3  VPS28     VPS28 protein


Domain annotation for each model (and alignments):
>> VPS28  VPS28 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.8     0.011   2.1e+02     113     149 ..      94     130 ..      89     143 .. 0.87
   2 ?    3.6   0.1    0.0025        45     140     183 ..     176     218 ..     159     222 .. 0.76
   3 ?    4.5   0.0    0.0014        25     104     159 ..     353     410 ..     345     421 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.011
       VPS28 113 lkLnlkakdqlhplLsdLveslnkleklekdfegksk 149
                 +kL+ +++dql   + dL e+  kl+  ++++++ +k
  KKY18933.1  94 IKLKKEEQDQLVRKVLDLQEKNAKLRAANREVSKSKK 130
                 89***********************988998887776 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0025
       VPS28 140 lekdfegksklvkWliklnkmkasdeLseeearqllfdlesaYk 183
                  +   +  +k+++W +  n++  ++ L++e +r+l   +e+ Y+
  KKY18933.1 176 IQALGKWSEKVRNWCKD-NELGPDHVLDKEALRKLTQHIEEGYD 218
                 44444456778888654.889999999**************997 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.0014
       VPS28 104 qnFITlmDalkLnlkakd...qlhplLsdLveslnkleklekdfegksklvkWliklnk 159
                 + F+ + + l L ++a d    lh + s L  s+++  +++ +f+++sk +kW  +ln+
  KKY18933.1 353 HLFVRINELLELFMEAGDlafSLHSHGSKLTFSYHSC-NERIQFSKRSKYMKWHPTLNT 410
                 5677777788888888887778999999********9.689****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1146  (0.0639188); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.51
# Mc/sec: 3738.12
//
Query:       KKY18934.1  [L=810]
Description: putative hsp70-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00013   20.3   0.1    0.00033   19.0   0.0    1.6  2  HSP70         Hsp70 protein
  ------ inclusion threshold ------
        0.2   11.7   0.0        0.4   10.8   0.0    1.4  1  Spore_III_AB  Stage III sporulation protein AB (spore_III_AB)


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.13   1.1e+03       1      21 [.     271     291 ..     271     300 .. 0.76
   2 !   19.0   0.0   3.7e-08   0.00033     135     200 ..     419     499 ..     397     508 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.13
                 EEEEEEXSSEEEEEEEETTEE CS
       HSP70   1 viGiDLGttnsvvavmeggki 21 
                 vi  DLGtt+s+ a +  +++
  KKY18934.1 271 VIAYDLGTTYSAAAHVSVKRA 291
                 5778*******9887666555 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 3.7e-08
                 EEEEEEXTTXXHHHHHHHHHHHHHTTX.....EEEEEEEHHHHHHHHHHTCCSS...........SCEEEEEEEEXSSXEEE CS
       HSP70 135 davitvPaYfndaqRqatkdAgkiAGL.....nvlRivNepTAaalaYGldkkd...........kernvlvyDlGggtfdv 200
                 + ++tvPa ++d+++q t+ A++ AG+     + l iv ep Aa +++ + ++            +e   + +D+Gggt d+
  KKY18934.1 419 KYIVTVPATYDDQKKQITRRAAQAAGIgtrpqDHLEIVTEPEAA-MSFAVAESVkmrtlrdiplkSETSCICIDVGGGTIDA 499
                 679***********************9555555799*****985.5555554444555999***88999999*******985 PP

>> Spore_III_AB  Stage III sporulation protein AB (spore_III_AB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.4e-05       0.4      32     108 ..     521     598 ..     519     614 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.4e-05
                   HHHHHHHHHHHHHHH-SS-HHHHHHHHHHCS-TTHHHHHHHHHHHHH..STSS-HHHHHHHHHHHHGGGS---HHHHH CS
  Spore_III_AB  32 elkralellegeirygatpLpealeklaeksesplseffeevaerlee.kegesfeeaweeavekllkklaLkkedke 108
                   +l+ a +++++ +++++++  +a+ k+ e+ ++  s+f++++ + ++  ++ e++++ +e ++ +l+k+l L++++ e
    KKY18934.1 521 ALRGATAIIRAFLAWMHATFGHAFHKVPEHKRNAGSDFVRSFESAMKGfDGAENLGRHFEISLPSLWKELRLQEKHHE 598
                   5778889999999**********************************988***********************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 5541.61
//
Query:       KKY18935.1  [L=320]
Description: hypothetical protein UCRPC4_g04657 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-32  112.8   0.7    1.4e-32  112.4   0.7    1.2  1  DUF1746       Fungal domain of unknown function (DUF1746)
  ------ inclusion threshold ------
      0.053   12.8   0.4      0.068   12.5   0.4    1.1  1  7TM_GPCR_Sru  Serpentine type 7TM GPCR chemoreceptor Sru


Domain annotation for each model (and alignments):
>> DUF1746  Fungal domain of unknown function (DUF1746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   0.7   1.6e-36   1.4e-32       2     115 .]      54     172 ..      53     172 .. 0.96

  Alignments for each domain:
  == domain 1  score: 112.4 bits;  conditional E-value: 1.6e-36
     DUF1746   2 ldllvyvllvilYlrDlsflrlllRafvqlllltpkpsaiaelp.....aakpllvavlvsnllclllhllfglpsaseasrgylhgGliidFiGekap 95 
                 ld+  yv+l+++Y++D ++ ++llRa++q+l+l+p+ ++  ++p      ++p++ +++ +n++c+l+hl++  p+a+e ++ y hgG+++dF+Gek+p
  KKY18935.1  54 LDTTLYVELAAIYYLDARLSTFLLRALLQVLILSPRVPSSFQPPtvidpLNNPIIGVLFSTNVICILAHLISDGPQAGEVTQFYNHGGIFVDFVGEKTP 152
                 8999*****************************9998876666568888************************************************** PP

     DUF1746  96 ssrlellllDvlilllQlvm 115
                 +srl+llllD l++++Q+vm
  KKY18935.1 153 VSRLRLLLLDGLVFIIQIVM 172
                 ******************98 PP

>> 7TM_GPCR_Sru  Serpentine type 7TM GPCR chemoreceptor Sru
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   7.6e-06     0.068     117     227 ..      72     187 ..      45     202 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.6e-06
  7TM_GPCR_Sru 117 lfpvlfcllRliilfsprnh.....ekinskilkilipliiiypflltfflipalg.vCrqldepfqfGaiiisfegsnfglrnsiillvnsvfvli 207
                   l+++l+ +l  ++++spr        +++  + + +i +++   +++++ ++ ++g    ++++ +++G i++ f g+++ +     ll++  +v+i
    KKY18935.1  72 LSTFLLRALLQVLILSPRVPssfqpPTVIDPLNNPIIGVLFSTNVICILAHLISDGpQAGEVTQFYNHGGIFVDFVGEKTPV-SRLRLLLLDGLVFI 167
                   55555555555555555555333333456666677777778888888888877777468899****************9954.55555555666666 PP

  7TM_GPCR_Sru 208 liiilnillllklrklkkls 227
                   + i++  +++ k + +k ++
    KKY18935.1 168 IQIVMMAVMMEKSKLSKLQD 187
                   66666555555444433222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2244.32
//
Query:       KKY18936.1  [L=388]
Description: hypothetical protein UCRPC4_g04658 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0054   17.4   0.1      0.012   16.3   0.1    1.5  1  IMS_C     impB/mucB/samB family C-terminal domain


Domain annotation for each model (and alignments):
>> IMS_C  impB/mucB/samB family C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   6.6e-07     0.012       7      81 ..      41     135 ..      36     148 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.6e-07
       IMS_C   7 epksissektfpepyd.esk.........lkkelr..........eLaeelarrLrdkglvartitlklrys....dfhasrsatLprptsdtreilea 81 
                  ++s+ss kt  ++y+ e++         +               +L+  +a  L +k+l++   +l+lr+s    +  +s ++ +p pts+ ++++ +
  KKY18936.1  41 SKQSVSSHKTVNRRYSaEALighweainlI----AiklahpkakpRLTPYVASALLKKHLLGAVGHLTLRFSrapwFTARSQTVRIPSPTSSRQALITT 135
                 355**********99964446766655441....0455677888**************************998885555***********998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2645.15
//
Query:       KKY18937.1  [L=232]
Description: putative fumarylacetoacetate hydrolase domain-containing protein 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-51  173.0   0.0    8.4e-51  172.7   0.0    1.0  1  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.7   0.0   4.7e-55   8.4e-51       1     207 [.      10     203 ..      10     219 .. 0.89

  Alignments for each domain:
  == domain 1  score: 172.7 bits;  conditional E-value: 4.7e-55
                    .EEEEEEE--SHHHHHTTT.-SS-EEEEEEGGGE.EETTE..EE-TT.SSSS-EE......EEEEEEEESS-B--T..--HHHHHTTEEEEEEEEE CS
  FAA_hydrolase   1 kivcdglnyaehvreagkaaeeppdrhiplepvfflkrasslvgpgd.pirrPagsekldyEvELavvigkplrev..lsveeAedaiaGytllnD 93 
                    k+vc+g+nya+h++e+ +a    p+     +p fflk+++s+ +p++ p+ rP+g + l+yE ELa+++gk+++++   + + A da+  y+l  D
     KKY18937.1  10 KVVCIGRNYADHIAELSSA---RPK-----QPFFFLKPTTSILAPKTgPVIRPRG-TDLHYEIELAIILGKKVKDLpvEDEQGAWDAVDSYCLSID 96 
                    689************9755...444.....556*********9999868******.67******************64344558************ PP

                    EE-SBGGG---..HHHHHHTGGGEEEEEE-B--B-.STT---SS-EEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHH-B-TT-EEEEEES.... CS
  FAA_hydrolase  94 vsaRdlqaeek.aplgwflgksfdtftpiGpwivtpdeledpedlelrlrvngeevqdsntkdmifspaeliahlsagltLepGdliltGTpsgvg 188
                    ++ R+ q+e+k + l+w  +k+fdtf pi+  i ++  ++dp++l+++l+vnge+ q+ +t+ m+f+++++i+ +s+++tLepGd+++tGTp+gvg
     KKY18937.1  97 MTQRNGQWEAKkKGLPWSICKGFDTFLPISERI-PKTRIKDPHNLTIELSVNGEVHQRDSTQLMLFQVPRMISDISQVMTLEPGDIVCTGTPKGVG 191
                    **********97777******************.************************************************************98 PP

                    ...S--EE--TT-EEEEEE CS
  FAA_hydrolase 189 aeeeslkflkdgDevevei 207
                            + +gD+++ ++
     KKY18937.1 192 -------PVVPGDVMVGRL 203
                    .......488888886555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.51
# Mc/sec: 1381.21
//
Query:       KKY18938.1  [L=748]
Description: putative eukaryotic translation initiation factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-44  151.7   1.0    3.8e-44  150.5   1.0    1.6  1  DEAD           DEAD/DEAH box helicase
    3.2e-31  108.0   3.1    1.4e-30  105.9   0.1    3.3  4  Helicase_C     Helicase conserved C-terminal domain
     0.0084   16.4   7.7      0.021   15.2   0.1    3.0  3  AAA_19         AAA domain
     0.0087   15.4   0.0      0.019   14.3   0.0    1.5  1  CMS1           U3-containing 90S pre-ribosomal complex subuni
     0.0097   14.5   2.6      0.016   13.7   2.6    1.3  1  Baculo_F       Baculovirus F protein
  ------ inclusion threshold ------
      0.052   13.1  11.9       0.11   12.0  11.9    1.5  1  PspA_IM30      PspA/IM30 family
       0.34   11.0   8.7       0.26   11.3   7.3    1.6  1  Mito_fiss_reg  Mitochondrial fission regulator
       0.89    9.8   4.8       0.38   11.0   0.6    2.6  2  AAA_22         AAA domain
        1.7    9.1   5.3        3.8    8.0   0.5    3.6  4  FlaC_arch      Flagella accessory protein C (FlaC)
        2.8    8.3   8.5        9.9    6.5   0.8    3.6  3  HALZ           Homeobox associated leucine zipper
        2.8    8.4   8.8        8.4    6.8   8.8    1.8  1  CENP-H         Centromere protein H (CENP-H)
        9.5    6.8  15.3         29    5.2  15.3    1.8  1  APG6_N         Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   1.0   2.6e-47   3.8e-44       2     175 ..      49     213 ..      48     214 .. 0.96

  Alignments for each domain:
  == domain 1  score: 150.5 bits;  conditional E-value: 2.6e-47
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdi 100
                 +iQ++ai  +++g dv+++a+ G+GKT+ f+i vlq++      +  +ali++PtreLa+q+ + +  ++++++++++++igg++ r+++++l+ g+++
  KKY18938.1  49 AIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISVLQKID--PALKSCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVREDMKALQDGPQV 145
                 79************************************4..699999**********************************************999*** PP

                 EEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 vvgtpgr++d+++++ l++++++++VlDEad++l+ gf ++i  i++ l       +++ qv++lSAT+p+dv +
  KKY18938.1 146 VVGTPGRVHDMIQRRVLKTDNMKMFVLDEADEMLSRGFTEQIYDIFQLL-------PQSTQVVLLSATMPQDVLE 213
                 *************************************************.......45567*********99865 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.9   4.3e+03      32      71 ..     191     227 ..     164     232 .. 0.69
   2 !  105.9   0.1   9.5e-34   1.4e-30       2     111 .]     250     358 ..     249     358 .. 0.91
   3 ?   -2.7   0.1       4.9   7.3e+03      57      60 ..     461     464 ..     420     513 .. 0.56
   4 ?    0.3   0.0       0.6     9e+02      98     109 ..     711     722 ..     686     723 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.9
                 HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEE CS
  Helicase_C  32 vklllekkgikvavlhgelpqnereeileqfnkgesdvLi 71 
                 ++ll   ++ +v+ l +++pq+  +e+ ++f ++ +++L+
  KKY18938.1 191 FQLL--PQSTQVVLLSATMPQD-VLEVTTKFMRDPVRILV 227
                 3455..4567777777766665.57788888777777776 PP

  == domain 2  score: 105.9 bits;  conditional E-value: 9.5e-34
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 kl++l +l+ +++   +++if+nt+++++  ++ l + ++++v ++hg+++q++r+ i+++f++g+s+vLiatd ++rGid+++v+lVin+dlp n ++
  KKY18938.1 250 KLDTLSDLY-ETVTITQAVIFCNTRRKVDWlTDKL-TARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANREN 346
                 667777776.788999************7665555.3458*********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 yi+riGR gR+g
  KKY18938.1 347 YIHRIGRGGRFG 358
                 **********86 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 4.9
                 HHHH CS
  Helicase_C  57 eile 60 
                 ++le
  KKY18938.1 461 KTLE 464
                 2222 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.6
                 HHHHHHHTTSSS CS
  Helicase_C  98 tsyiqriGRtgR 109
                 ++y qr+GR +R
  KKY18938.1 711 EKYLQRKGRWWR 722
                 78*******999 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.4e-05     0.021       1      68 [.      51     117 ..      51     212 .. 0.63
   2 ?   -1.0   0.0       1.3     2e+03      40      75 ..     261     296 ..     250     380 .. 0.78
   3 ?    2.6   2.5      0.11   1.6e+02      31      93 ..     432     493 ..     424     512 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.4e-05
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae 68 
                 q++a+   +k + ++  a  GtGKT +    v   ++   +k  + l++a+t+  a+++++ + a+ ++
  KKY18938.1  51 QQRAIMpVIKGSDVIAQAQSGTGKTATFSISVLQKIDPA-LKSCQALILAPTRELAQQIQKVVVAI-GD 117
                 7888887999999**************987776666666.56699***************988443.33 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.3
      AAA_19  40 vkpeeillvaftgrAakelrerlaalgaeatTiHrl 75 
                 v   + ++ + t+r ++ l+++l+a +   + +H+ 
  KKY18938.1 261 VTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGD 296
                 556788999999999999999997766667777754 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.11
      AAA_19  31 vallvelggvkpeeillv.aftgrAakelrerlaalgaeatTiHrlalldfddlltealellee 93 
                  + l+ +++ k+++++++ a tg +a+++++  +++ ++ t +H+   l  d++ + + ++l++
  KKY18938.1 432 HQTLLLEHDKKLAQCAMLeAQTGESAQRIKTLENKVAEHHTALHAA--LVEDQQSKAKISALKN 493
                 555666677778888776599*********9998999999999977..6667767677777772 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.2e-05     0.019     180     209 ..     145     174 ..     131     180 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
        CMS1 180 iavGtpgRildLleeeslsvdeLkrivlDa 209
                 + vGtpgR+ d+++  +l+ d++k  vlD 
  KKY18938.1 145 VVVGTPGRVHDMIQRRVLKTDNMKMFVLDE 174
                 789*************************96 PP

>> Baculo_F  Baculovirus F protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   2.6   1.1e-05     0.016      48     141 ..     409     501 ..     398     519 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
    Baculo_F  48 iWsFvieidhgallqelnelknetekllkaikekelanCsskkaikkelesiikkkienlvekhnsidkklakkseeeslekl.elekk.vkkrkk 141
                 +W + +  d++a++q+ +e+++e ++ll +  +k+la+C   +a   e  + ik+  ++++e+h+ ++  l++ ++  s+ k+  l+++  + r+k
  KKY18938.1 409 LWLYKFRRDYNAISQKHEEINKEHQTLLLEH-DKKLAQCAMLEAQTGESAQRIKTLENKVAEHHTALHAALVEDQQ--SKAKIsALKNElEELRAK 501
                 59999999******************99555.9**************************************99944..333332444443233555 PP

>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0  11.9   7.5e-05      0.11      45     141 ..     403     508 ..     383     510 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.5e-05
   PspA_IM30  45 alaqviarqkqlerkleeqkeqakklekkAkaALtkgeeeLAr.........ealaeikslekqaealetqlaqqrsaveqlrkqlealetkieelkak 134
                 + aq +   +++ r++++ +++ ++  k+ + +L + + +LA+         e +++ik+le+++++++t l  +    +q +++++al+  +eel+ak
  KKY18938.1 403 QYAQSLLWLYKFRRDYNAISQKHEEINKEHQTLLLEHDKKLAQcamleaqtgESAQRIKTLENKVAEHHTALHAALVEDQQSKAKISALKNELEELRAK 501
                 5555555567888999999999999999999988888666665333333333779******************************************** PP

   PspA_IM30 135 kellkar 141
                  e+ ++r
  KKY18938.1 502 AEVSALR 508
                 9876655 PP

>> Mito_fiss_reg  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   7.3   0.00017      0.26      91     195 ..     457     559 ..     428     614 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
  Mito_fiss_reg  91 llkrqdslpslrreekkvksdlkaneeAlkkiaaLedELakLRaQIAkIVaaqeasns..saslelsdtpdllepksssaspslep..ssslpppp 182
                    +++ ++  ++++++++  +++l+ ++++  ki+aL +EL +LRa  A++ a+ + +++   ++++++  ++     +ss +p+l p  +s ++ ++
     KKY18938.1 457 AQRIKTLENKVAEHHTALHAALVEDQQSKAKISALKNELEELRAK-AEVSALRHFNHEcdLSTFSSQHLHQ----FNSS-PPELPPaqRSATTCTF 546
                    33333444455666777888899999999***************8.9999998888773222222222222....2222.2223222122222333 PP

  Mito_fiss_reg 183 ppppppippesps 195
                     ++p+p  +++++
     KKY18938.1 547 DSSPLPSHESMAP 559
                    3333332111111 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.6   0.00025      0.38      72     130 ..     147     207 ..      64     214 .. 0.55
   2 ?   -3.3   0.3       6.9     1e+04      58      71 ..     461     480 ..     423     509 .. 0.46

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00025
      AAA_22  72 rlsseellealeqalraravielliiDEaqh.lrseealeeLrsllnl..srkgvqliLvGt 130
                  ++  ++ +++++ + +++  +++++DEa+  l s    e++ +++ l  ++++v l+ + +
  KKY18938.1 147 VGTPGRVHDMIQRRVLKTDNMKMFVLDEADEmL-SRGFTEQIYDIFQLlpQSTQVVLLSATM 207
                 445555556777777777767**********77.9999999999999866666666655555 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6.9
      AAA_22  58 rellralglelka......e 71 
                 + l +++ + + a      e
  KKY18938.1 461 KTLENKVAEHHTAlhaalvE 480
                 22222222222223333332 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.45   6.7e+02      37      48 ..     251     262 ..     233     265 .. 0.78
   2 ?   -2.5   0.0       4.7     7e+03      26      38 ..     382     406 ..     372     415 .. 0.61
   3 ?   -2.6   0.0       5.1   7.6e+03      20      38 ..     415     433 ..     406     436 .. 0.73
   4 ?    8.0   0.5    0.0025       3.8       1      40 [.     459     498 ..     459     503 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.45
   FlaC_arch  37 VkdllsLYEvVs 48 
                    l +LYE+V+
  KKY18938.1 251 LDTLSDLYETVT 262
                 566779*****9 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.7
   FlaC_arch  26 lsksveelkenV............k 38 
                  s+++ee+  nV            +
  KKY18938.1 382 YSTQIEEMPMNVaaqmrnpeiqyaQ 406
                 5788899888885555555555555 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 5.1
   FlaC_arch  20 kkeneelsksveelkenVk 38 
                 +++ + +s++ ee++++ +
  KKY18938.1 415 RRDYNAISQKHEEINKEHQ 433
                 6777788888888887655 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0025
   FlaC_arch   1 ridelEnklsklsteletvkkeneelsksveelkenVkdl 40 
                 ri++lEnk+ ++ t l  +  e ++ + ++  lk + ++l
  KKY18938.1 459 RIKTLENKVAEHHTALHAALVEDQQSKAKISALKNELEEL 498
                 89************99999888888888888888776654 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.25   3.8e+02       2      22 ..      14      34 ..      14      37 .. 0.73
   2 ?    6.5   0.8    0.0066       9.9      11      34 ..     415     438 ..     413     441 .. 0.92
   3 ?    2.6   0.5      0.11   1.7e+02      30      42 ..     490     502 ..     485     503 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.25
        HALZ  2 QLErDYdvLKasYdaLksdyd 22
                Q+E  Yd    s+da+ ++ +
  KKY18938.1 14 QIESNYDEITDSFDAMNLKPE 34
                788888888888888876655 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0066
        HALZ  11 KasYdaLksdydsLkkenekLkae 34 
                 +++Y+a   +++ ++ke ++L+ e
  KKY18938.1 415 RRDYNAISQKHEEINKEHQTLLLE 438
                 799******************987 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.11
        HALZ  30 kLkaelqeLkekl 42 
                 +Lk+el+eL++k 
  KKY18938.1 490 ALKNELEELRAKA 502
                 799******9995 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.8    0.0056       8.4       8      84 ..     418     504 ..     411     506 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0056
      CENP-H   8 rdelssellklsqelrelqeeltevekenlrlkrknrelaaellelakekesek..........eklkeelekleaelkksrqrwrv 84 
                  +++s++++++++e+++l+ e ++  ++   l++++ e a+++  l+++ +++           ++ k+++++l++el++ r++++v
  KKY18938.1 418 YNAISQKHEEINKEHQTLLLEHDKKLAQCAMLEAQTGESAQRIKTLENKVAEHHtalhaalvedQQSKAKISALKNELEELRAKAEV 504
                 678999*************************************777777666667999999998889999*********99999876 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  15.3     0.019        29      46     128 ..     422     504 ..     393     523 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.019
      APG6_N  46 deeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaqyeh 128
                  +++ee+++e ++l  e +++l++ + le++  e ++ +++le++ ++ +   ++ + e ++ + + + l++el+ l a+ e 
  KKY18938.1 422 SQKHEEINKEHQTLLLEHDKKLAQCAMLEAQTGESAQRIKTLENKVAEHHTALHAALVEDQQSKAKISALKNELEELRAKAEV 504
                 35788888888888888888888888888888888888888888888888888888888888888888888888888887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1206  (0.0672653); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.48
# Mc/sec: 4716.82
//
Query:       KKY18939.1  [L=337]
Description: putative f-box and domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-17   63.3   0.6    1.5e-13   51.1   0.2    2.1  2  Cupin_8   Cupin-like domain
    2.4e-10   40.9   0.2    1.3e-09   38.5   0.2    2.2  2  JmjC      JmjC domain, hydroxylase
  ------ inclusion threshold ------
       0.16   11.5   0.0       0.25   10.9   0.0    1.3  1  Cupin_1   Cupin


Domain annotation for each model (and alignments):
>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   5.9e-05      0.35      13      50 ..      36      73 ..      26     104 .. 0.74
   2 !   51.1   0.2   2.4e-17   1.5e-13     128     245 ..     130     243 ..     114     251 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.9e-05
     Cupin_8 13 kPviikgalkdwpalqkwtddeylleylkekaedvkvs 50
                 P+i+++++ +wp  + w++ + l +y  ++ + + v 
  KKY18939.1 36 IPFILTDVVPKWPVYRDWSETALLTKYGDKVFRAEAVD 73
                6******************7555666666666666665 PP

  == domain 2  score: 51.1 bits;  conditional E-value: 2.4e-17
     Cupin_8 128 kkpeavnlWlGnsasvsslHkDh..yeNlycvvrGrKkftLfpPsdap.flyeaslsptedgtvvssvdveepdlekfprlkdakkalevtlnaGevLy 223
                 ++p++  l +G+++s s +HkD+     + +v++G K +++fpPs  p  +y + +    +++v+s+++++e  l    +++++  ++e   ++GevL+
  KKY18939.1 130 QRPDHRWLIVGPKRSGSTFHKDPnaTSAWNAVIKGSKYWIMFPPSVLPpGVYMSAD----QSEVTSPLSIAEWLLTFHDEARNTPGCIEGVCHEGEVLH 224
                 3488888999*************9999******************99735777774....4689*********9999999999999************* PP

     Cupin_8 224 lPalWfHeVkslaeeplhlavn 245
                 +P++W+H V +l  ep   a+ 
  KKY18939.1 225 VPSGWWHLVVNL--EP-ATAIT 243
                 **********99..55.33443 PP

>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.2   2.1e-13   1.3e-09       1     114 []     136     246 ..     136     246 .. 0.86
   2 ?   -3.1   0.0       1.7     1e+04      37      73 ..     247     279 ..     247     284 .. 0.64

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 2.1e-13
                 EEEEE-TT-EEEEE--GGG-EEEEEEEEES-EEEEEE-GGGHHHHHHHHHHHHHCCSTTG.CCTTTCEE-HHHHHHTT---EEEEE-TT-EEEE-TT-E CS
        JmjC   1 wlylgmpksttpwhiedqglySinylhfgapkvWyiipeekkeklekvlskknskeqpdl.lrhkstlispkqlekegipvyrfvqkpgefVfvfpgay 98 
                 wl +g+++s   +h + ++++ +++  ++++k+W ++p++       +  +++    p     ++ t+ +  +   +   +++ v ++ge++ v++g++
  KKY18939.1 136 WLIVGPKRSGSTFHKDPNATS-AWNAVIKGSKYWIMFPPSVLPPGVYMSADQSEVTSPLSiAEWLLTFHDEARNTPG---CIEGVCHEGEVLHVPSGWW 230
                 899*****************9.9***************999887776666664455555557777777777777666...99***************** PP

                 EEEEESSSEEEEEEEE CS
        JmjC  99 Hsvfnlgfniaeavnf 114
                 H v+nl  + a+++nf
  KKY18939.1 231 HLVVNLEPATAITQNF 246
                 ***************9 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.7
                 E-GGGHHHHHHHHHHHHHCCSTTG.CCTTTCEE-HHHH CS
        JmjC  37 ipeekkeklekvlskknskeqpdl.lrhkstlispkql 73 
                 ip ++ +++ ++l++k+     d    + ++ ++p++l
  KKY18939.1 247 IPRAHLKSALRFLKDKS-----DQiSGFSNDVVDPYVL 279
                 56777777888888873.....3336666667777664 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.2e-05      0.25      59     111 ..     160     243 ..     138     259 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.2e-05
                 EEEESEEEEEEEETTSS...........................EEEEEE........EETTEEEEE-TT-EEEEEEESSSSEEEEE CS
     Cupin_1  59 yvlqGegrvgfvvpgng..........................nrdfhkk........lreGdvfvvPaglvhfqynsgdepavaiv 111
                  v++G+ +  +++p                             ++d+ ++         +eG+v+ vP+g+ h ++n   epa ai 
  KKY18939.1 160 AVIKGSKY-WIMFPPSVlppgvymsadqsevtsplsiaewlltFHDEARNtpgciegvCHEGEVLHVPSGWWHLVVNL--EPATAIT 243
                 55555555.555555445556666666666666666666666644444334444445599******************..8999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2175.83
//
Query:       KKY18940.1  [L=222]
Description: putative chromatin modification-like protein eaf6 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-26   91.2   0.4    5.7e-26   90.2   0.0    1.7  2  NuA4      Histone acetyltransferase subunit NuA4
  ------ inclusion threshold ------
       0.72   10.0   2.3       0.77    9.9   0.3    2.0  3  DUF678    Protein of unknown function (DUF678)


Domain annotation for each model (and alignments):
>> NuA4  Histone acetyltransferase subunit NuA4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.0   6.3e-30   5.7e-26       1      78 [.      38     133 ..      38     134 .. 0.95
   2 ?   -2.1   0.1      0.42   3.8e+03      55      64 ..     183     192 ..     169     213 .. 0.58

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 6.3e-30
        NuA4   1 eLkellkkkrelekelakleeqIydkEteYleetssvGNiikGFdnylk..................ssssssaaerrkrkvtdedriFSlSSvts 78 
                 +L+++++kkr l+k+l++le++I+++E++Yle+ts++GNiikGFdny+k                   s+s ++++rrk+ ++d dr+FS+SS+ s
  KKY18940.1  38 DLRDTIQKKRILDKNLSALEDSIFRLESSYLEDTSPAGNIIKGFDNYIKgstvsgsggggggpgsgtISGSAAGGTRRKIVIQDTDRVFSRSSTGS 133
                 599*************************************************************99988888888999***************976 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.42
        NuA4  55 saaerrkrkv 64 
                 + ++++k+++
  KKY18940.1 183 KPTKKKKAAA 192
                 2222233333 PP

>> DUF678  Protein of unknown function (DUF678)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.87   7.8e+03      15      29 ..     115     129 ..     110     134 .. 0.68
   2 ?    9.9   0.3   8.6e-05      0.77       4      30 ..     178     204 ..     175     207 .. 0.89
   3 ?   -2.0   0.1      0.46   4.1e+03       4      14 ..     206     216 ..     203     218 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.87
      DUF678  15 pkttvededdctTCS 29 
                  k++++d d +   S
  KKY18940.1 115 RKIVIQDTDRVFSRS 129
                 567888888775554 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 8.6e-05
      DUF678   4 tagkkkrrkrkpkttvededdctTCSl 30 
                 ++g+kk  k+k  ++++d++++ T S+
  KKY18940.1 178 AGGNKKPTKKKKAAAIDDDEASATGSA 204
                 699*******************99986 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.46
      DUF678   4 tagkkkrrkrk 14 
                  +g+kk ++ k
  KKY18940.1 206 EGGNKKNKRLK 216
                 58999988866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1525.46
//
Query:       KKY18941.1  [L=1104]
Description: putative alpha-mannosidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-86  288.4   0.8    5.8e-86  288.4   0.8    1.6  2  Glyco_hydro_38N  Glycosyl hydrolases family 38 N-terminal dom
    1.2e-59  202.0   0.1    2.8e-58  197.5   0.1    2.3  2  Glyco_hydro_38C  Glycosyl hydrolases family 38 C-terminal dom
    1.4e-26   92.5   0.0    3.3e-26   91.3   0.0    1.7  1  Alpha-mann_mid   Alpha mannosidase middle domain
    5.8e-11   42.4   0.0    2.1e-10   40.6   0.0    1.9  2  Glyco_hydro38C2  Glycosyl hydrolases family 38 C-terminal bet


Domain annotation for each model (and alignments):
>> Glyco_hydro_38N  Glycosyl hydrolases family 38 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2       1.1   4.7e+03     147     171 ..     104     128 ..      99     133 .. 0.74
   2 !  288.4   0.8   1.3e-89   5.8e-86       2     288 ..     283     548 ..     282     549 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.1
                      SS-HHCHCCHHHTT-SCEEEE-TTS CS
  Glyco_hydro_38N 147 rlsyndknkfaeqkhlefiWrgsdg 171
                      +++    +++ +++hlef W++ ++
       KKY18941.1 104 KIELTVPESMRDAEHLEFHWDANNE 128
                      56666667888999******98765 PP

  == domain 2  score: 288.4 bits;  conditional E-value: 1.3e-89
                      EEEEEEEE--SSSSS-HHHHHCCTCHHHHHHHHHHHHHSTT--EEES-CHHHHHHHCCS-CCCHHHHHHHHHCTSEEECTT-SS-B-SSSS-HH CS
  Glyco_hydro_38N   2 vhvvpHsHiDvgWlktvdeyqrrkvqrilssvlellerdpdrkFilseaslferwweeapeekkelvkklvaegrlevvgGgwvenDealpsge 95 
                      ++ ++H+HiD++Wl++++e+ +rkv+r++s++++ll+r+p+ +F++s+a++++++++ +p+ ++++ k++v++g + ++gG+wve+D+++psge
       KKY18941.1 283 IYGIGHCHIDTCWLWPWAET-KRKVARSWSNQCDLLDRYPEHRFTASQAQQYKWLEKLYPTVYDRV-KDKVKKGLFLPIGGSWVEHDTNMPSGE 374
                      789*****************.*********************************************.*************************** PP

                      HHHHHHHCCCHHHHCCH--EESEEEESSSSSB-TCHHHHHHCTT--EEEESSS-HHCHCCHHHTT-SCEEEE-TTSTEEEEEE--TT.SSHCCC CS
  Glyco_hydro_38N  96 slirqlleGqrflkeefgvrpkvaWliDpFGysatlPqllkkaGidsfltqrlsyndknkfaeqkhlefiWrgsdgteilthmlpadsydptyg 189
                      sl+rq+++Gqrf++++fg r+k++Wl+D+FGys++lPql++ aG+++f+tq+ls+n++n+f   +h++f+W + dg+++l+hm p++    ty+
       KKY18941.1 375 SLVRQFVYGQRFFESRFGERCKTFWLPDTFGYSSQLPQLCRLAGMSRFFTQKLSWNNINNF---PHTTFNWVSLDGSQVLCHMAPSE----TYT 461
                      *************************************************************...*********************98....899 PP

                      CCC.GGGTTTHHHCHHHHHHCHHHHHTTSSSSEEEEEECEETHCCCCHHHHCCHHHHHHHHHHC....SSEEEEC-.-HHHHHHHHHHHS...H CS
  Glyco_hydro_38N 190 fqfdfkrdenvkeraekllaqvkklaektrtnevllplGddfadgqggnteklleeinrsneke....slpkvqfg.tpseYfdalekenaefp 278
                      +++          ++ ++ ++v++++++++++++ll++G++  dg+gg+t +++e+++r++  +    +lp+v++g t++++f++le+     +
       KKY18941.1 462 ADA----------HFGDVKRSVTQHKSMDQDKTSLLVFGKG--DGGGGPTWEHIEKLRRCRGISdevgLLPRVKMGyTVEDFFQRLED-----K 538
                      999..........****************************..*****************995557889******9456*********.....5 PP

                      CE-ESSB-S- CS
  Glyco_hydro_38N 279 tkdsddfpvy 288
                      + ++++f+++
       KKY18941.1 539 ASNGTEFVTW 548
                      5557888888 PP

>> Glyco_hydro_38C  Glycosyl hydrolases family 38 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.045     2e+02     131     158 ..     457     484 ..     448     487 .. 0.90
   2 !  197.5   0.1   6.3e-62   2.8e-58       1     214 []     723     931 ..     723     931 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.045
                      TCEEEEETTTCEEEEESSTTTT...S.. CS
  Glyco_hydro_38C 131 aefatdengfgvikRptdqntsweaakf 158
                      +e++t++  fg +kR   q +s +++k+
       KKY18941.1 457 SETYTADAHFGDVKRSVTQHKSMDQDKT 484
                      799*****************99999875 PP

  == domain 2  score: 197.5 bits;  conditional E-value: 6.3e-62
                      XTTSS-EEEE.TTTSSEEEEESTTTS-EEE....EEEEEEEEEEECS-S-SSS--BSTT-EEEE--.S-EEECEE-SS-EEEEEEETTES...E CS
  Glyco_hydro_38C   1 leNgflkveidaknGtlksiydkeakrevlke.qvgnqfaayedapdssdaydfkpdneekplevsekeveviesgplvaevtvkfkieaesti 93 
                      l N ++kve+  ++G ++s+ydk+a+rev+++ +  nq+++++d+p +++a+d++ ++ + + e+++ + +++e+ p + ++++++ki+ +s+i
       KKY18941.1 723 LANAHFKVEV--EDGVITSLYDKKADREVIAKgGKANQLVIFDDKPLYWQAWDVEVFHLNSRQELKSGKSVTVENTPYRVSLETETKISSKSWI 814
                      68********..78******************9889*****************************************************99*** PP

                      EEEEEEE....ECCCCEEEEEEEE-TTECEEEEEEEE---TTCEEEEETTTCEEEEESSTTTT...S..SEGGGG-EEESSEEEEE-SSEEEEE CS
  Glyco_hydro_38C  94 sqeirLy....kgkkriefevkvdweekevllkvafpidiqaefatdengfgvikRptdqntsweaakfeviagnyypiqsfvdlqdesygvav 183
                      +++i+L+    ++ +++e+  + +w+e+ ++lkv+fp+d+ +++a++e+++g+++Rpt++nt+w++akfev      ++++f+dl+++sygv++
       KKY18941.1 815 KTTISLEaslsEEPSYVEVVAEAEWHETMKFLKVEFPVDVVNTEASYETQYGIVRRPTHYNTNWDMAKFEV------CCHKFADLSEHSYGVSI 902
                      ******99999999*********************************************************......***************** PP

                      EECS-EEEEE-SSTTEEEEEEEEEBSSS-TT CS
  Glyco_hydro_38C 184 lndskyGvssleqggqleLsLlRrplypdpr 214
                      lndskyG+++  +g+ ++LsLlR+p++pd++
       KKY18941.1 903 LNDSKYGFAT--CGNLMRLSLLRAPKAPDAH 931
                      **********..9****************85 PP

>> Alpha-mann_mid  Alpha mannosidase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.0   7.3e-30   3.3e-26       1      96 []     555     652 ..     555     652 .. 0.95

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 7.3e-30
                     EE--GGGTSSCHHHHHHHHHHHHHHHHHHHCCTTT..-SCGC-HHHHHHHHHHHHHHHTCTTTTTT-S-HHHHHHCCHHHHHHHHHHHHHCCCCC CS
  Alpha-mann_mid   1 elhrgtfTSrarlKrlnrkleslLraaellssaaa..skgyeypkeeleelwkalllnqfHDilpGtsieeVyedaeerlaealkelekllesal 93 
                     elhrgt+T++a++Kr nr++e +++++e+l++ a+  sk+y+ypke+++++w++ ll+qfHD+lpG++ie++y+d +e +a+ ++ ++k  ++al
      KKY18941.1 555 ELHRGTYTTQANNKRNNRRCEIMMHDLEYLATLASfkSKDYKYPKEDIDTIWENTLLCQFHDCLPGSAIEMCYDDSDELYAKNFELGKKAKKDAL 649
                     79******************************655789**********************************************99999999988 PP

                     CCC CS
  Alpha-mann_mid  94 rkL 96 
                      +L
      KKY18941.1 650 SVL 652
                     765 PP

>> Glyco_hydro38C2  Glycosyl hydrolases family 38 C-terminal beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.2   5.6e+03       2      16 ..     997    1011 ..     996    1012 .. 0.81
   2 !   40.6   0.0   4.6e-14   2.1e-10      10      69 .]    1030    1100 ..    1023    1100 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.2
                       EEEEEEEE-TTT--E CS
  Glyco_hydro38C2    2 vhlltlkkaededdl 16  
                       ++l+ +k+aed+ d+
       KKY18941.1  997 LVLDCIKRAEDDPDI 1011
                       7899******87665 PP

  == domain 2  score: 40.6 bits;  conditional E-value: 4.6e-14
                       -TTT--EEEEEEESSSSSBEEE-EETT.SCEEEEE-TTSSB-...............-TTSEEXTTXEEEEE CS
  Glyco_hydro38C2   10 aededdlllRlynlseegedatlslsqpvksvnvknllEttlape............eleielkPmEIrTfi 69  
                       a +++++++R+y++ +++++ t++  +p k+v ++n+lE++l +e            e++iel+ +E++T++
       KKY18941.1 1030 ASSSKSVIIRVYESLGGKARGTIRSKWPLKQVFKTNILEDDL-EElvvtkkegngdsEVKIELRAFEVATYR 1100
                       44699*************************************.3457777779999**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.48
# Mc/sec: 6950.70
//
Query:       KKY18942.1  [L=676]
Description: putative cap-gly domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-17   61.6   0.3      1e-16   60.7   0.3    1.5  1  CAP_GLY         CAP-Gly domain
     0.0079   16.6   1.7       0.27   11.6   0.2    2.8  2  eIF3g           Eukaryotic translation initiation factor 3 su
  ------ inclusion threshold ------
      0.034   14.2   0.9      0.034   14.2   0.9    2.8  3  Baculo_PEP_C    Baculovirus polyhedron envelope protein, PEP,
       0.08   13.2   1.7        0.6   10.4   0.1    2.3  2  zf-HC5HC2H      PHD-like zinc-binding domain
       0.15   12.5  36.0      0.026   15.0  13.9    3.4  4  Fez1            Fez1
       0.15   12.5   9.4        1.6    9.2   0.2    3.1  3  NPV_P10         Nucleopolyhedrovirus P10 protein
       0.17   10.8  33.5       0.36    9.7  12.6    3.4  4  Spc7            Spc7 kinetochore protein
       0.17   10.7  29.1      0.046   12.6  17.4    2.9  2  DUF812          Protein of unknown function (DUF812)
       0.42   10.8  14.6       0.77    9.9   0.1    3.7  4  Fib_alpha       Fibrinogen alpha/beta chain family
       0.89   10.3  11.3        5.3    7.8   5.4    3.5  4  FliD_N          Flagellar hook-associated protein 2 N-terminu
        1.2    9.2   4.7       0.47   10.5   1.6    1.8  2  Pkip-1          Pkip-1 protein
        1.5    7.3  21.8       0.01   14.5   8.0    2.6  3  AAA_13          AAA domain
        2.3    8.8  11.3        1.7    9.2   2.3    3.4  3  ING             Inhibitor of growth proteins N-terminal histo
        2.4    8.2  39.5        1.9    8.6   4.4    5.8  5  TMF_DNA_bd      TATA element modulatory factor 1 DNA binding
        3.1    5.9  23.2       0.14   10.3  17.4    1.6  2  EzrA            Septation ring formation regulator, EzrA
        3.7    8.0  14.9        2.9    8.3   3.2    3.6  3  V-SNARE         Vesicle transport v-SNARE protein N-terminus
        4.4    7.4  33.4        3.6    7.6   4.6    3.6  3  TPR_MLP1_2      TPR/MLP1/MLP2-like protein
        4.4    6.5  20.2      0.042   13.1   2.3    3.1  3  HemX            HemX, putative uroporphyrinogen-III C-methylt
        4.7    7.1  23.4       0.97    9.3   0.4    3.2  3  FTA4            Kinetochore complex Fta4 of Sim4 subunit, or 


Domain annotation for each model (and alignments):
>> CAP_GLY  CAP-Gly domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.3   1.1e-19     1e-16       1      64 [.       5      72 ..       5      73 .. 0.92

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 1.1e-19
     CAP_GLY  1 vgdrvklkegrrGvvryvGpvpfakgewvGveldep...nGkndGsvkgkrYFe.ckpnrGvFvrpek 64
                vgd v++++g +G+++++Gpv ++kg+++Gv l +    +Gkn+Gsv+gk YF+  kp +G+F++ ek
  KKY18942.1  5 VGDSVDVPGGMYGTIKFIGPVAGKKGTFAGVDLHHSfwaKGKNNGSVDGKSYFRtSKPTSGIFLPLEK 72
                799**999*************************9866679*************846799*****9987 PP

>> eIF3g  Eukaryotic translation initiation factor 3 subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.12   1.1e+02      86     119 ..     534     567 ..     475     569 .. 0.73
   2 !   11.6   0.2   0.00029      0.27     105     123 ..     655     674 ..     641     676 .] 0.81

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.12
       eIF3g  86 ekeeeekekaklkkkekklvkCriCk.gdHfTskC 119
                  ++ +e++ ++++k+ ++ ++C +C+ + H   +C
  KKY18942.1 534 LETMQEDAISEVSKA-TTNLRCELCEeEGHDILNC 567
                 334556666666644.4559*****7577866666 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00029
       eIF3g 105 vkCriCk.gdHfTskCPykd 123
                   C +C  ++H T++CPy d
  KKY18942.1 655 KWCAVCDsEEHNTMECPYED 674
                 47****55**********98 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.5      0.28   2.6e+02      43      81 ..     218     259 ..     213     264 .. 0.61
   2 ?   14.2   0.9   3.6e-05     0.034      10      97 ..     274     366 ..     270     374 .. 0.88
   3 ?   -2.4   0.0       4.7   4.5e+03      64      89 ..     465     493 ..     421     499 .. 0.48

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.28
  Baculo_PEP_C  43 ietqLnalsedlksllaeldt...rldtlltnLtdalnalq..d 81 
                   i++++++  e++k+l a+l++   +l++++++L+d  ++l+  +
    KKY18942.1 218 IDGTVQQ--EEMKRLKAQLQEkdlQLKEQSAALSDMEKTLTelQ 259
                   5554444..55666666665555588888888888777777333 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.6e-05
  Baculo_PEP_C  10 gggnqfldLtnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq......dtlrneLtnlnsiltnL 97 
                   +++n++ d+t++ + +r +n  i a+l++ +da    + +  + l+ +++e ++  +  +++L + + +lq       ++  +L+ l+  + +L
    KKY18942.1 274 NTSNETSDVTQLRALLREKNERI-AALTAEFDAHRADFRSTIDTLEMASTETERVYERRVDELLQEIRELQdrgedvASVAMQLKQLEELVQEL 366
                   89*********************.***********************************************77765556667777777666665 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.7
  Baculo_PEP_C  64 rldtlltnLtdalnalq...dtlrneLtn 89 
                    l++ l +L++ + + +   ++l+ eL+ 
    KKY18942.1 465 GLEKKLRELESVIERKTyreEELERELER 493
                   33334444444443333333444444444 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00064       0.6      19      54 ..     534     569 ..     522     576 .. 0.82
   2 ?    1.5   0.1      0.37   3.5e+02      34      53 ..     652     671 ..     647     674 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00064
  zf-HC5HC2H  19 iemeeiedvekikkerkklkCylCkkkvGaciqCsk 54 
                  e+++ + +++++k++ +l+C lC+++   +++C++
  KKY18942.1 534 LETMQEDAISEVSKATTNLRCELCEEEGHDILNCNN 569
                 56788899*******************667788986 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.37
  zf-HC5HC2H  34 rkklkCylCkkkvGaciqCs 53 
                  +++ C +C+++   +++C 
  KKY18942.1 652 DEEKWCAVCDSEEHNTMECP 671
                 56788*****9999999996 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6  11.2     0.082        78      31     123 ..     225     309 ..     216     339 .. 0.38
   2 ?   15.0  13.9   2.8e-05     0.026      26     154 ..     275     408 ..     270     411 .. 0.70
   3 ?   12.3  14.7   0.00019      0.18      24     151 ..     340     505 ..     335     517 .. 0.72
   4 ?    4.2   4.1     0.054        51      50     147 ..     466     559 ..     417     569 .. 0.55

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.082
        Fez1  31 seivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaq 123
                 +e+       + l+a+l+ek+ ++ke +++l++ ++ l +++  +    + ++  r+ +++  +++++lr  l+e++++ +  ++e d+++a 
  KKY18942.1 225 EEM-------KRLKAQLQEKDLQLKEQSAALSDMEKTLTELQTLMPTDDEGSKHSRN-TSNETSDVTQLRALLREKNERIAALTAEFDAHRAD 309
                 333.......33444444444444444444444443333333333332222222222.33333344444444444333333333333333333 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2.8e-05
        Fez1  26 vtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrk........kseaellrekvekleeelkelreelselsleeeeaale 116
                  ++ +s++ +l+a lre ++++ +  +e + +++ +++  + le    e +r          +e   l+++ e + +  ++l++ l+el    +e ++ 
  KKY18942.1 275 TSNETSDVTQLRALLREKNERIAALTAEFDAHRADFRSTIDTLEMASTETERVyerrvdelLQEIRELQDRGEDVASVAMQLKQ-LEELV---QELEEG 369
                 5678899*******************************9999999999999987655544444444444444444444444444.33333...333333 PP

        Fez1 117 sdea.kaqrqeaeeleelkreverlraeLkeerqkkeeq 154
                  ++a + + +++ e+e+l+ ever ++eLk+er+k  + 
  KKY18942.1 370 LEDArRGEAEARGEVEHLRGEVERTKTELKHERDKAAQS 408
                 33330344455789*******************996654 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 0.00019
        Fez1  24 aevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekv.ekleeelkelreelsels.leeeeaa...... 114
                  e+  +++++ ++  ql++l++ ++e ee +++++    e   e+e++  e++r+k+e +  r+k+ ++++++  +  ++ + ++ l+++e        
  KKY18942.1 340 RELQDRGEDVASVAMQLKQLEELVQELEEGLEDARRGEAEARGEVEHLRGEVERTKTELKHERDKAaQSFKSPSPDAARDHRLAKdLHAKE-Deirglk 437
                 48899**************************************************888777777751345666555433333222022222.1345777 PP

        Fez1 115 ................................lesdeakaqrqe.........aeeleelkreverlraeLkeerqkk 151
                                                 l          +         + + eel+re+erlr+ +++er ++
  KKY18942.1 438 aiiqslsrgsvqspgmngtpansadhaglekkL----------RelesvierkTYREEELERELERLRTTVSLERPQS 505
                 777777777777778888888777765555442..........02334444445678899999999999999999875 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.054
        Fez1  50 keeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqeaeeleelkreverlraeLkee 147
                  e++++ele+ +e kt   e++e el+r +++++l r + + + ++ +   +++  +  ++++ +    ++  +  ++++++e ++ + +lr eL ee
  KKY18942.1 466 LEKKLRELESVIERKTYREEELERELERLRTTVSLERPQSSGYGNKNRLSDRTVVPVDWRDQNGS----RQPLETMQEDAISEVSKATTNLRCELCEE 559
                 45566666666666666666666666666666665555444443333322222333222222222....22222333456666666666666666665 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   1.6    0.0097       9.2      20      65 ..     222     262 ..     214     268 .. 0.79
   2 ?   -2.1   0.0       5.8   5.5e+03      38      55 ..     283     300 ..     274     318 .. 0.50
   3 ?    9.2   0.2    0.0017       1.6      18      59 ..     330     371 ..     325     375 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0097
     NPV_P10  20 VdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiL 65 
                 V   q+++++++++l++ +    +L +qsa+L ++e+++++ q ++
  KKY18942.1 222 V--QQEEMKRLKAQLQE-K--DLQLKEQSAALSDMEKTLTELQTLM 262
                 3..57889999999998.3..46899*************9998765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.8
     NPV_P10  38 telnekLdaqsaqLaele 55 
                 t+l + L + ++ +a+l 
  KKY18942.1 283 TQLRALLREKNERIAALT 300
                 333333333333333332 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0017
     NPV_P10  18 dkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkve 59 
                  +Vd l q++ ++q+  +dv  +  +L ++ + ++ele+ +e
  KKY18942.1 330 RRVDELLQEIRELQDRGEDVASVAMQLKQLEELVQELEEGLE 371
                 689**********************************99776 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   7.4     0.038        36     196     236 ..     222     262 ..     214     287 .. 0.69
   2 ?    9.7  12.6   0.00039      0.36     148     275 ..     279     409 ..     271     413 .. 0.80
   3 ?    8.7   8.8   0.00075       0.7     143     224 ..     327     407 ..     321     441 .. 0.73
   4 ?    7.0   0.5    0.0025       2.3     153     189 ..     461     497 ..     458     507 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.038
        Spc7 196 idkeeLeelreelaelkaeieekkkelaelqeqleeleeki 236
                 +++ee++ l+ +l+e + +++e+++ l+++++ l+el++ +
  KKY18942.1 222 VQQEEMKRLKAQLQEKDLQLKEQSAALSDMEKTLTELQTLM 262
                 56788888888888888888888888888888887777644 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00039
        Spc7 148 legleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelk...aeieekkkelaelqeqleeleekieelkeqk 243
                  +++++ ++lL +++e + +l  e+++++a+ ++++++l+ a++e e + + ++ el +e++el+   +++++   +l++l+e ++elee +e+++   
  KKY18942.1 279 TSDVTQLRALLREKNERIAALTAEFDAHRADFRSTIDTLEMASTETERVYERRVDELLQEIRELQdrgEDVASVAMQLKQLEELVQELEEGLEDARRGE 377
                 566777788999999999999999***************999999999776666666665555432228899999999999999999999999999999 PP

        Spc7 244 seleeeiaeaervleeckgwsesevsrlkeev 275
                 +e++ e+++ +  +e++k   ++e ++  +++
  KKY18942.1 378 AEARGEVEHLRGEVERTKTELKHERDKAAQSF 409
                 99999999999999988887777766666555 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00075
        Spc7 143 gleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelae 224
                 ++e+++++l ++ ++L+++ e + ++  +l++  +el +ele+  e a+  e+  + e+e lr e+++ k+e+++ +++ a+
  KKY18942.1 327 VYERRVDELLQEIRELQDRGEDVASVAMQLKQ-LEELVQELEEGLEDARRGEAEARGEVEHLRGEVERTKTELKHERDKAAQ 407
                 46677777777777888888888887777754.5566666666666667777777888888888888888887777666555 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0025
        Spc7 153 edkelLekqeeeldellpeleeekaeleeeleklqea 189
                 +d + Lek+  el+++ ++ + +++ele+ele+l++ 
  KKY18942.1 461 ADHAGLEKKLRELESVIERKTYREEELERELERLRTT 497
                 69999*****************************985 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6  17.4   4.9e-05     0.046     336     480 ..     224     371 ..     216     375 .. 0.70
   2 ?    3.4   8.8     0.031        29     327     414 ..     358     449 ..     354     532 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.9e-05
      DUF812 336 qeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkkktlellpdaeeniekLqalveasaqrlvelakqWekhRvplieeyrelk 434
                 qe++++l+++++e + ++k+ ++ ++ +e++l+e+++   +  +  k  + t +      + + +L al+ ++++r+  l +++++hR+     + +l+
  KKY18942.1 224 QEEMKRLKAQLQEKDLQLKEQSAALSDMEKTLTELQTLMPTDDEGSKHSRNTSN----ETSDVTQLRALLREKNERIAALTAEFDAHRADFRSTIDTLE 318
                 566677777777777777777777777777777777777777777666666654....558899*********************************** PP

      DUF812 435 esksekekeaerkle....eikklrekmkevae...elrqkeellkqLvaele 480
                  + +e+e  +er+++    ei++l+++ ++va+   +l+q eel+++L++ le
  KKY18942.1 319 MASTETERVYERRVDellqEIRELQDRGEDVASvamQLKQLEELVQELEEGLE 371
                 ******99888876511115667766666654411134444444444444444 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.031
      DUF812 327 kreeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelek....evklkkktlellpdaeeniekLqalveasaqrlve 414
                 + ee ++el+e +e++++  +e + e+++l+ ++++++ el+ e+ + ++  k    + +  +++++ l   e  i+ L+a++++ ++  v+
  KKY18942.1 358 QLEELVQELEEGLEDARRGEAEARGEVEHLRGEVERTKTELKHERDKAAQSFKspspDAARDHRLAKDLHAKEDEIRGLKAIIQSLSRGSVQ 449
                 44566789***********************************99999988762222467888888888889************98876554 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   4.4     0.088        83      35     115 ..     232     307 ..     214     326 .. 0.46
   2 ?    4.3   4.1     0.046        44      33     121 ..     251     342 ..     247     361 .. 0.49
   3 ?    9.9   0.1   0.00082      0.77      30     115 ..     356     444 ..     350     447 .. 0.81
   4 ?   -2.2   0.1       4.5   4.3e+03     103     124 ..     469     490 ..     462     506 .. 0.50

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.088
                 HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHH CS
   Fib_alpha  35 kdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesne 115
                  +l++   +l+e s   +++e++ +e+++ +  + + +k++ n     s+e   ++++l++ + ++ ++i +L+  +++ +
  KKY18942.1 232 AQLQEKDLQLKEQSAALSDMEKTLTELQTLMPTDDEGSKHSRN----TSNETS-DVTQLRALLREKNERIAALTAEFDAHR 307
                 3333333333333333344444444444433333333332222....222222.455566666666666666665554433 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.046
                 CCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHH....HHHHHHHHHHHHHHHHH CS
   Fib_alpha  33 vkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesni....rvLqnvlesneqkiqkL 121
                 ++k+l++l+  + +  + +k+++++++e++d+++ +    + +++ i  ++ e + + ++++ tid+ e       rv    ++++ q+i +L
  KKY18942.1 251 MEKTLTELQTLMPTDDEGSKHSRNTSNETSDVTQLRALLRE-KNERIAALTAEFDAHRADFRSTIDTLEMASteteRVYERRVDELLQEIREL 342
                 55666666666666666666666666666666555555555.344555555555655566666555544222000022222222333333333 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00082
                 CCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH...HHHHCCCHHHHHHHCCHHHHHHHHHHHHHHH CS
   Fib_alpha  30 ekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdn.dnvikkssk...eleeeilrlketidaqesnirvLqnvlesne 115
                  k++++ +++le+ le++++ + ea+  v++++  +++++++ k++ d++ +++++   +   +  rl + + a+e +ir L+ +++s++
  KKY18942.1 356 LKQLEELVQELEEGLEDARRGEAEARGEVEHLRGEVERTKTELKHErDKAAQSFKSpspDAA-RDHRLAKDLHAKEDEIRGLKAIIQSLS 444
                 5778899**************************99888877776655666666655111444.77899******************9976 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 4.5
                 HHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha 103 nirvLqnvlesneqkiqkLeqd 124
                 ++r+L +v+e++  + ++Le +
  KKY18942.1 469 KLRELESVIERKTYREEELERE 490
                 3344444444333333333333 PP

>> FliD_N  Flagellar hook-associated protein 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   5.4    0.0056       5.3       9      70 ..     218     278 ..     214     307 .. 0.67
   2 ?    3.2   0.1      0.16   1.5e+02      13      54 ..     325     366 ..     309     396 .. 0.78
   3 ?   -0.5   0.0       2.2   2.1e+03      29      75 ..     476     522 ..     460     532 .. 0.67
   4 ?   -2.4   0.0       8.6   8.1e+03      32      51 ..     537     556 ..     525     592 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0056
                 XXXXXXXXXX.XXXX.XXXXXXXXXXXHHHHHHHHHHHHHHHHHH......HHHXXGGGGGXEEEEECST CS
      FliD_N   9 vkqlmkaera.kldk.leqkktklewkqsayrelnsklsnlksal......salsksstfsakkatssde 70 
                 ++  ++ e++ +l+  l++k  +l+++ +a++++++ l++l++ +      s   k       + ++s+e
  KKY18942.1 218 IDGTVQQEEMkRLKAqLQEKDLQLKEQSAALSDMEKTLTELQTLMptddegS---K------HSRNTSNE 278
                 677788888845544799999999*******************555432221...1......11222222 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.16
                 XXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHH CS
      FliD_N  13 mkaerakldkleqkktklewkqsayrelnsklsnlksalsal 54 
                   ++++++d+l q+  +l+ + +++ ++  +l++l++ +++l
  KKY18942.1 325 ERVYERRVDELLQEIRELQDRGEDVASVAMQLKQLEELVQEL 366
                 4566779999***********************999855544 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 2.2
                 XXXXXHHHHHHHHHHHHHHHHHHHHHXX.GGGGGXEEEEECSTTTEEE CS
      FliD_N  29 klewkqsayrelnsklsnlksalsalsk.sstfsakkatssdesvvta 75 
                  +e k    +el+ +l+ l++++s l++ +s+   +k   sd +vv +
  KKY18942.1 476 VIERKTYREEELERELERLRTTVS-LERpQSSGYGNKNRLSDRTVVPV 522
                 455555555678889999999664.75555555566777777777655 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 8.6
                 XXHHHHHHHHHHHHHHHHHH CS
      FliD_N  32 wkqsayrelnsklsnlksal 51 
                  + +a++e++++ +nl+ +l
  KKY18942.1 537 MQEDAISEVSKATTNLRCEL 556
                 46788888888888887654 PP

>> Pkip-1  Pkip-1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       4.5   4.2e+03      34      53 ..     223     242 ..     215     262 .. 0.67
   2 ?   10.5   1.6    0.0005      0.47      28     113 ..     272     354 ..     259     379 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.5
      Pkip-1  34 lqeellilsAelfGqeEQle 53 
                 +qee++ l+A+l   + Ql+
  KKY18942.1 223 QQEEMKRLKAQLQEKDLQLK 242
                 67888888888866555544 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0005
      Pkip-1  28 sskdeqlqeellilsAelfGqeEQleaLesenasdkekldfvndlsdLdlsneeieslletkendeflkkkykaaklleaiqkifd 113
                 s ++ +++ + ++l A l   +E + aL      d++++df   ++ L++ + e e+++e  + de+l+++ + ++  e+++++ +
  KKY18942.1 272 SRNTSNETSDVTQLRALLREKNERIAALTA--EFDAHRADFRSTIDTLEMASTETERVYE-RRVDELLQEIRELQDRGEDVASVAM 354
                 44458999********************99..8899***********************9.77788***99999999999988877 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   2.3      0.19   1.8e+02     410     453 ..     221     262 ..     212     271 .. 0.75
   2 ?   14.5   8.0   1.1e-05      0.01     305     456 ..     284     443 ..     264     449 .. 0.78
   3 ?   -1.1   0.1       0.6   5.7e+02     436     478 ..     460     501 ..     455     514 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.19
      AAA_13 410 eldeykkkykklekaieklekelkeeeaelkkleeeikeLekql 453
                  ++  ++++k+l++++++ + +lke++a+l  +e+   eL++ +
  KKY18942.1 221 TVQ--QEEMKRLKAQLQEKDLQLKEQSAALSDMEKTLTELQTLM 262
                 444..566888888888888888888888888888888888765 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.1e-05
      AAA_13 305 klkavsde.....asensafeedkeelkaeaealeeqLkglqraleaKrkepfksve.lesvkakiesikklvaeineliakhNekvanleeekeeakk 397
                 +l a+  e     a +  +f+  ++++++ +++le++ ++ +r+ e++++e+ +++  l++  +++ s+  ++++++el+++  e  ++  + ++ea+ 
  KKY18942.1 284 QLRALLREkneriAALTAEFDAHRADFRSTIDTLEMASTETERVYERRVDELLQEIReLQDRGEDVASVAMQLKQLEELVQELEEGLEDARRGEAEARG 382
                 333333332222344555677789******************************88659**************************************** PP

      AAA_13 398 klelhl..veeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrde 456
                 ++e+ +  ve+ + el++  +k ++  k+ +   ++    +++l ++e+ei+ L++ +++ 
  KKY18942.1 383 EVEHLRgeVERTKTELKHERDKAAQSFKSPSPDAARDHRLAKDLHAKEDEIRGLKAIIQSL 443
                 ***9764478888888877777777777766666777778888888888898888877665 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.6
      AAA_13 436 eaelkkleeeikeLekqlrdekpaaeeinkeLkafGlgeleLk 478
                 +a+ + le++ +eLe  ++ ++   ee+++eL++  ++  +L+
  KKY18942.1 460 SADHAGLEKKLRELESVIERKTYREEELERELERL-RTTVSLE 501
                 55666777777777777777777777777777776.6665554 PP

>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.6      0.13   1.2e+02      14      54 ..     225     274 ..     223     284 .. 0.63
   2 ?    9.2   2.3    0.0018       1.7      15      86 ..     281     356 ..     276     373 .. 0.64
   3 ?    0.4   0.1         1   9.8e+02       8      34 ..     383     410 ..     378     446 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.............TS..S-HHH CS
         ING  14 lelqrnltelreiDakvqellkeidskiekfl.............kngslqkne 54 
                 +e++r+  +l+e+D +++e+ + +++  +++              k    ++ +
  KKY18942.1 225 EEMKRLKAQLQEKDLQLKEQSAALSDMEKTLTelqtlmptddegsK----HSRN 274
                 689999999999**99999998885544444455577787743332....2222 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...TS..S-HHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHH CS
         ING  15 elqrnltelreiDakvqellkeidskiekfl...kngslqknekeeels.riqeelkeaqelldeKiqlaqqaldl 86 
                 +++++  +lre+  ++  l++e d +  +f     + ++++ e e++++ r+ e l+e+ el+d    +a+ a++l
  KKY18942.1 281 DVTQLRALLREKNERIAALTAEFDAHRADFRstiDTLEMASTETERVYErRVDELLQEIRELQDRGEDVASVAMQL 356
                 4444555566666666666666666666655555555688888888888888888888888888877777777765 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 1
                 SGGGHHHHHHHHHHHHH.HHHHHHHHHH CS
         ING   8 svenLPlelqrnltelr.eiDakvqell 34 
                  ve+L  e++r  tel+ e D+  q+ +
  KKY18942.1 383 EVEHLRGEVERTKTELKhERDKAAQSFK 410
                 5899999999999999736677766655 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.4     0.002       1.9      31      69 ..     223     261 ..     221     264 .. 0.93
   2 ?    4.2   8.4     0.046        44       2      69 ..     284     345 ..     283     374 .. 0.83
   3 ?   -0.3   4.8       1.1   1.1e+03       2      58 ..     351     407 ..     350     411 .. 0.78
   4 ?    0.2   0.0      0.78   7.4e+02       3      24 ..     422     443 ..     420     449 .. 0.77
   5 ?    5.8   2.6     0.015        14      38      68 ..     466     496 ..     459     501 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.002
  TMF_DNA_bd  31 lnntikkLrkknkelekeikelkkkleklekeleeleer 69 
                 + + +k+L+++++e + ++ke++  l++ ek l+el+ +
  KKY18942.1 223 QQEEMKRLKAQLQEKDLQLKEQSAALSDMEKTLTELQTL 261
                 56889*******************************975 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.046
  TMF_DNA_bd   2 slekklkeKDeqIaqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleer 69 
                 +l+++l+eK+e+Ia+L +E     +   + + ti+ L     e+e   + +++++++l +e+ el++r
  KKY18942.1 284 QLRALLREKNERIAALTAEF---DAHRADFRSTIDTLEMASTETE---RVYERRVDELLQEIRELQDR 345
                 67899************765...5566778888988877666555...67888888888888888876 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.1
  TMF_DNA_bd   2 slekklkeKDeqIaqLmeEGekLskkelklnntikkLrkknkelekeikelkkklek 58 
                 s++++lk+ +e +++L e +e+ +  e + +  +  Lr +++ + +e+k   +k ++
  KKY18942.1 351 SVAMQLKQLEELVQELEEGLEDARRGEAEARGEVEHLRGEVERTKTELKHERDKAAQ 407
                 567788888888888888888888888888888888888888888887776666655 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.78
  TMF_DNA_bd   3 lekklkeKDeqIaqLmeEGekL 24 
                 l+k+l +K+++I  L++  + L
  KKY18942.1 422 LAKDLHAKEDEIRGLKAIIQSL 443
                 6899999999999887655555 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.015
  TMF_DNA_bd  38 Lrkknkelekeikelkkkleklekeleelee 68 
                 L kk++ele+ i++ + + e+le+ele+l+ 
  KKY18942.1 466 LEKKLRELESVIERKTYREEELERELERLRT 496
                 899************************9975 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  17.4   0.00015      0.14     253     432 ..     221     400 ..     215     402 .. 0.89
   2 ?   -2.8   0.3       1.4   1.3e+03     305     335 ..     467     497 ..     463     502 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00015
                 HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSHHHHT--HHHHTTGGG-TTTS-GGGSSTTTS.TTHHHHH CS
        EzrA 253 eieelekkieeilerlkeleledveeelktieeeidsLyddlekEveAkkeveknlkelkeklehlekqnkelkeeldrlkqsYeLseeel.eklrele 350
                 ++++ e k  ++  + k+l+l++ +++l+++e+ + +L  ++ +  e  k+  + ++e ++ +++l++ ++e +e +  l  +++ +  +  ++++ le
  KKY18942.1 221 TVQQEEMKRLKAQLQEKDLQLKEQSAALSDMEKTLTELQTLMPTDDEGSKHSRNTSNE-TSDVTQLRALLREKNERIAALTAEFDAHRADFrSTIDTLE 318
                 5555555555666666889****************************99998777666.56799**********************9988725689999 PP

                 HHHHHHHHHHHHHHHHHS-SS---STTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS CS
        EzrA 351 kelkelekdyeeleekleekkvaYSelqeeleeleekleeieekqeeileslkslrkdEkrAreqldeikkelkeikrkiek 432
                     e e+ ye+ +++l ++     +  e++ ++  +l+++ee ++e++e l++ r+ E++Ar ++++++ e++ +k +++ 
  KKY18942.1 319 MASTETERVYERRVDELLQEIRELQDRGEDVASVAMQLKQLEELVQELEEGLEDARRGEAEARGEVEHLRGEVERTKTELKH 400
                 9999*************************************************************************99986 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.4
                 TTTSSSSSHHHHT--HHHHTTGGG-TTTS-G CS
        EzrA 305 eknlkelkeklehlekqnkelkeeldrlkqs 335
                 ek+l+el++ +e+ +   +el++el+rl+ +
  KKY18942.1 467 EKKLRELESVIERKTYREEELERELERLRTT 497
                 6666777777777777777777777776654 PP

>> V-SNARE  Vesicle transport v-SNARE protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   1.8     0.048        46       5      40 ..     224     261 ..     221     263 .. 0.84
   2 ?    8.3   3.2    0.0031       2.9      12      78 ..     336     399 ..     328     400 .. 0.84
   3 ?   -0.3   0.0       1.5   1.4e+03       3      42 ..     438     478 ..     436     480 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.048
     V-SNARE   5 laeiksklarlsslage..erkaalreiekkldeaeel 40 
                 ++e k+  a+l++++ +  e++aal++ ek l e+++l
  KKY18942.1 224 QEEMKRLKAQLQEKDLQlkEQSAALSDMEKTLTELQTL 261
                 6788888899998886345***************9987 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0031
     V-SNARE  12 larlsslageerkaalreiekkldeaeelldqMelEvrnlpsserasykaklreykselkklkkelk 78 
                 l+ +++l  ++r + ++ +  +l+++eel++++e  ++++     a+  + ++  + e+++ k+elk
  KKY18942.1 336 LQEIREL--QDRGEDVASVAMQLKQLEELVQELEEGLEDAR-RGEAEARGEVEHLRGEVERTKTELK 399
                 4444544..699*************************9997.7889999999999999999999987 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.5
     V-SNARE   3 ellaeiksklarlsslag.eerkaalreiekkldeaeelld 42 
                 ++++++++   + +  +g    +a  + +ekkl e+e++++
  KKY18942.1 438 AIIQSLSRGSVQSPGMNGtPANSADHAGLEKKLRELESVIE 478
                 66777888888888888866788888889999999999987 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  14.6     0.011        10       2     117 ..     226     344 ..     224     346 .. 0.89
   2 ?    7.6   4.6    0.0039       3.6      62     114 ..     352     404 ..     346     411 .. 0.68
   3 ?    2.7   0.3      0.13   1.3e+02       2      31 ..     469     498 ..     462     507 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.011
  TPR_MLP1_2   2 elksleeeikslkeekeeaeaklqklqedlekqaeia..keaqqkYerelvkhaedvkelqa.lreelnelkaeiaelkaeaesakaeleeseesweeq 97 
                 e+k+l++++++++ + +e+ a+l+ +++ l++ + ++   +   k +r   +  +dv++l+a lre+ +++ a  ae+ a + + ++++++ e + +e+
  KKY18942.1 226 EMKRLKAQLQEKDLQLKEQSAALSDMEKTLTELQTLMptDDEGSKHSRNTSNETSDVTQLRAlLREKNERIAALTAEFDAHRADFRSTIDTLEMASTET 324
                 7899999*********************99999998722455679999999999999999884599999999999999999999*************** PP

  TPR_MLP1_2  98 keelekelselekriedlne 117
                 +  +e++++el + i +l++
  KKY18942.1 325 ERVYERRVDELLQEIRELQD 344
                 *****************985 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0039
  TPR_MLP1_2  62 lreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekried 114
                 +  +l++l++ ++el++ +e+a+   +e++ + e  + e e+ ++el+  ++ 
  KKY18942.1 352 VAMQLKQLEELVQELEEGLEDARRGEAEARGEVEHLRGEVERTKTELKHERDK 404
                 44567777777777777777777777777777777777777777777776664 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.13
  TPR_MLP1_2   2 elksleeeikslkeekeeaeaklqklqedl 31 
                 +l++le+ i++++ ++ee+e++l+ l++ +
  KKY18942.1 469 KLRELESVIERKTYREEELERELERLRTTV 498
                 667777777777777777777777777665 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   7.0      0.54   5.1e+02      27      97 ..     238     304 ..     214     327 .. 0.55
   2 ?   13.1   2.3   4.4e-05     0.042      33     102 ..     328     397 ..     316     407 .. 0.89
   3 ?    0.5   0.1      0.31     3e+02      54      96 ..     456     498 ..     419     507 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.54
        HemX  27 qqqvqeltaevaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleelqqqls 97 
                  +q +e++a  ++++++l++l++ + +    + + ++ +++  + ++++ +l+++l ++++++++l++++ 
  KKY18942.1 238 DLQLKEQSAALSDMEKTLTELQTLMPT----DDEGSKHSRNTSNETSDVTQLRALLREKNERIAALTAEFD 304
                 334444444445555555555555444....3344444444555555555555555555555555555554 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.4e-05
        HemX  33 ltaevaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleelqqqlskvsga 102
                 ++ +v+el q++ +l++  + v++ + q ++lee +q+l+e le++++  ++   ++e+l+ ++++ + +
  KKY18942.1 328 YERRVDELLQEIRELQDRGEDVASVAMQLKQLEELVQELEEGLEDARRGEAEARGEVEHLRGEVERTKTE 397
                 4556799**********************************************************98876 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.31
        HemX  54 veaekeqkqeleerlqqlaeklealekeleqlqkqleelqqql 96 
                 + a+ ++++ le++l++l++ +e+++ + e+l+++le+l++ +
  KKY18942.1 456 TPANSADHAGLEKKLRELESVIERKTYREEELERELERLRTTV 498
                 5556667777778888888888888888888888888887766 PP

>> FTA4  Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   5.3     0.076        71     125     184 ..     223     282 ..     198     297 .. 0.80
   2 ?    2.4   6.2      0.13   1.2e+02     111     193 ..     322     396 ..     282     401 .. 0.68
   3 ?    9.3   0.4     0.001      0.97     144     195 ..     424     498 ..     396     500 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.076
        FTA4 125 llerYaelrarLielserrqqlqarlarlrklkallepflgsedpqesvqenlvtrdgel 184
                 ++e+ ++l+a+L+e + +++++ a l+ ++k+  +l+ +++++d+ +++ +n   + +++
  KKY18942.1 223 QQEEMKRLKAQLQEKDLQLKEQSAALSDMEKTLTELQTLMPTDDEGSKHSRNTSNETSDV 282
                 457889999999999999999999999999999999999998777777777766666554 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.13
        FTA4 111 eveekeaeeepleallerYaelrarLielserrqqlqarlarlrklkallepflgsedpqesvqenlvtrdge...leaElermRv 193
                 +        e++    +r +el +++ el++r + +++   +l++l++l++++   e++ e+  + +   +ge   l+ E+er+++
  KKY18942.1 322 T--------ETERVYERRVDELLQEIRELQDRGEDVASVAMQLKQLEELVQEL---EEGLEDARRGEAEARGEvehLRGEVERTKT 396
                 2........22223347889999999999999999******************...666666666666666664447778888775 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.001
        FTA4 144 qqlqarlarlrklkallepflgs.......................edpqesvqenlvtrdgeleaElermRvLl 195
                 + l+a+ ++ r lka +++++                          ++ esv e+  +r++ele+Eler+R+ +
  KKY18942.1 424 KDLHAKEDEIRGLKAIIQSLSRGsvqspgmngtpansadhaglekkLRELESVIERKTYREEELERELERLRTTV 498
                 344455555555555555553335556666677999999999999988999*********************866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1928  (0.107535); expected 358.6 (0.02)
Passed bias filter:                      905  (0.0504769); expected 358.6 (0.02)
Passed Vit filter:                       161  (0.00897987); expected 17.9 (0.001)
Passed Fwd filter:                        72  (0.00401584); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 1.32u 0.38s 00:00:01.70 Elapsed: 00:00:00.62
# Mc/sec: 3296.71
//
Query:       KKY18943.1  [L=324]
Description: putative short-chain dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-21   74.8   0.0    2.5e-18   66.3   0.0    2.1  2  adh_short      short chain dehydrogenase
    7.6e-10   38.7   0.0    7.5e-09   35.5   0.0    2.0  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    0.00042   19.8   0.1      0.061   12.7   0.0    2.1  2  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
    0.00056   19.9   0.0     0.0009   19.2   0.0    1.3  1  KR             KR domain
     0.0021   17.5   0.0     0.0027   17.2   0.0    1.2  1  Epimerase      NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.082   12.2   0.0       0.13   11.5   0.0    1.3  1  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,
       0.09   12.7   0.0       0.16   11.9   0.0    1.5  1  TIR-like       Predicted nucleotide-binding protein containin


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   9.6e-22   2.5e-18       1     138 [.      24     170 ..      24     179 .. 0.87
   2 !    6.5   0.0    0.0019         5     146     187 ..     194     235 ..     188     240 .. 0.91

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 9.6e-22
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT....TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGG CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee....gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfse 95 
                 kv +vtG+ssG+G+++a+ l+  +akv++++rs+ek++e+++ +k++    +  + ++++D++d + ++  ve+   k  +ldvL nNAG+  + p+ +
  KKY18943.1  24 KVFIVTGGSSGVGLELANILYGHNAKVYIAARSSEKANEAISTIKSNhpnsKGGIAFLRLDLNDLTGIKSSVEDFLGKETRLDVLWNNAGV-MMPPQGS 121
                 789******************************************998865556*************************************.6777777 PP

                 CSHHHHHHHHHHHTHHHHHHHHHHHHHHH....HCTTE..EEEEEEEGG CS
   adh_short  96 lseeewervievNltgvflltravlpaml....kqssG..rIvnvsSva 138
                  +++ +e  + +N +++fl t++++p +      + +G  r+v v+S a
  KKY18943.1 122 KTAQGYELQLGTNNVATFLFTKLLTPILQktakTAPEGsvRVVWVASSA 170
                 77788**********************9866553334422567676665 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0019
                 BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHH CS
   adh_short 146 vaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdma 187
                 ++ Y+AsKa+      + ak + ++gi  +++ PG ++Td+ 
  KKY18943.1 194 WTKYGASKAGNYFHGVEYAKRYGSDGIVSVSLDPGNLETDLY 235
                 789*******999999***********************986 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   2.9e-12   7.5e-09       3     121 ..      32     159 ..      30     249 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 2.9e-12
                   TTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE...E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae...v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsre 93 
                    sg+G ++A  l  + a+v ++ ++ e+ ++++ +++++++++   +  l++D +d + +++ ve+   k  +lD+l nnag++ +   p  + + +
    KKY18943.1  32 SSGVGLELANILYGHNAKVYIAARSSEKaNEAISTIKSNHPNSkggIafLRLDLNDLTGIKSSVEDFLGKETRLDVLWNNAGVMMP---PQGSKTAQ 125
                   58************************99999999999999844466357************************************9...6677899* PP

                   HHHHHHHHHTHHHHHHHHHHHHHCTSC......C CS
  adh_short_C2  94 efdraldvnlyslfllakaalplmkeg......g 121
                   +++  l +n  ++fl++k + p+++++      g
    KKY18943.1 126 GYELQLGTNNVATFLFTKLLTPILQKTaktapeG 159
                   **********************998874444443 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   2.4e-05     0.061       1      72 [.      27      96 ..      27     103 .. 0.84
   2 !    5.2   0.0    0.0046        12     147     176 ..     191     220 ..     179     251 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.4e-05
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHH CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerlla 72
                   ++TG++  +G  la+ L   + +v++  r ss+ + + i++++++ + + ++ + + + Dl+D + +++ ++
     KKY18943.1 27 IVTGGSSGVGLELANILYGHNAKVYIAAR-SSEKANEAISTIKSN-HPNSKGGIAFLRLDLNDLTGIKSSVE 96
                   59**********************97655.555566999999875.567799***********999887665 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0046
                    ----SHHHHHHHHHHHHHHHHHHHH---EE CS
  GDP_Man_Dehyd 147 fyPrsPYaaaKlyadwivvnyreayglfav 176
                     +P   Y+a+K+  ++  v+y + yg   +
     KKY18943.1 191 ARPWTKYGASKAGNYFHGVEYAKRYGSDGI 220
                    578889*******************97654 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   3.5e-07    0.0009       2      93 ..      25     116 ..      24     125 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.5e-07
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------ CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr 93 
                 ++++tGG  g+Glela+ l+ + a ++ + +Rs+++ +++ ++i++ + +    + ++++D+ d + +++ +e++  +e ++    + Agv++
  KKY18943.1  25 VFIVTGGSSGVGLELANILYGHNA-KVYIAARSSEKANEAISTIKSNHPNsKGGIAFLRLDLNDLTGIKSSVEDFLGKETRLDVLWNNAGVMM 116
                 579*****************9876.57888888655555555665555443569*********************999999999999999875 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.1e-06    0.0027       2     166 ..      27     221 ..      26     283 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.1e-06
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..........EEEE--TT-HH....HHHHHHHHH.T-SEEEE--S---HHHHHHSHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl..........elveldltdrs....alerlfkee.qpdavihlAavggvaassedpa 85 
                 +VtG++  +G  l++ l  ++ +v   +r s++ n+a    +           + +ldl d +    ++e+++ +e + d+  + A+v  +++ s++++
  KKY18943.1  27 IVTGGSSGVGLELANILYGHNAKVYIAARSSEKANEAISTIKsnhpnskggiAFLRLDLNDLTgiksSVEDFLGKEtRLDVLWNNAGVMMPPQGSKTAQ 125
                 7*****************************88888776665599****************98777779****99998**********999999888876 PP

                 HHHHHHTHHHHHHHHHHH................HHTCTEEEEEEEGGGGTSCSS.SSBSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT-EEEE CS
   Epimerase  86 dfieknlqgtlnlleaar................kagvkrllflsSsevYGkdae.qpkeettltgpl.kpnspYaaaKlageklveayaaqyglnaii 166
                    ++   gt n++  ++                +  v+ ++ +sS+    ++a+ + + ++++++   +p + Y+a+K+  +    +ya+ yg + i+
  KKY18943.1 126 G--YELQLGTNNVATFLFtklltpilqktaktapEGSVRVVWVASSAIQLLAPATgV-EMDNLDYKRDaRPWTKYGASKAGNYFHGVEYAKRYGSDGIV 221
                 6..667899999999999999999999988766555665566666643333333313.566666666689**********9999999999999977664 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.2e-05      0.13      25      77 ..      12      64 ..       3      68 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.2e-05
                   HHHHHCT---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHH CS
  THF_DHG_CYH_C 25 ellketgielegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeit 77
                   +l ++t  + +gk  +v G s+ vg  la +L  +na V ++ +++++ +e +
     KKY18943.1 12 TLTEKTLPDQAGKVFIVTGGSSGVGLELANILYGHNAKVYIAARSSEKANEAI 64
                   57778888999*********************************999988766 PP

>> TIR-like  Predicted nucleotide-binding protein containing TIR-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.3e-05      0.16       1      64 [.      24      89 ..      24     125 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.3e-05
    TIR-like  1 kvFivhgedeeaaeevkelLeklglepiileeqvnkgktiiekleealksvdfaivlltpd..Div 64
                kvFiv g ++ +  e++++L  ++++++i +   +k++  i +++++  +++ +i  l  d  D +
  KKY18943.1 24 KVFIVTGGSSGVGLELANILYGHNAKVYIAARSSEKANEAISTIKSNHPNSKGGIAFLRLDlnDLT 89
                8**********************************************9999999988776654555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.50
# Mc/sec: 1945.52
//
Query:       KKY18944.1  [L=212]
Description: putative gpi anchored [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1511.03
//
Query:       KKY18945.1  [L=971]
Description: putative wd domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-50  166.3  31.1    4.8e-07   30.4   0.1   12.5 12  WD40           WD domain, G-beta repeat
    1.1e-19   70.5   2.7     0.0065   16.7   0.1    8.4  8  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    1.2e-16   60.9   0.3    2.4e-16   60.0   0.3    1.5  1  Utp12          Dip2/Utp12 Family
    5.6e-10   38.7   1.9       0.12   11.3   0.0    5.6  5  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
     0.0016   16.9   0.0       0.19   10.0   0.0    3.2  4  Frtz           WD repeat-containing and planar cell polarity 
     0.0029   17.0   0.4       0.81    8.9   0.1    3.4  3  WD40_like      WD40-like domain
  ------ inclusion threshold ------
      0.054   12.2   2.9        3.9    6.1   0.1    4.1  4  Nucleoporin_N  Nup133 N terminal like


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.2   6.4e-05      0.16      10      38 .]      72     101 ..      60     101 .. 0.73
   2 !   30.4   0.1   1.9e-10   4.8e-07       4      38 .]     108     143 ..     105     143 .. 0.92
   3 !    9.2   0.0   0.00092       2.3       5      38 .]     151     204 ..     147     204 .. 0.79
   4 !    6.8   0.1    0.0053        14      13      38 .]     222     247 ..     208     247 .. 0.68
   5 ?    0.9   0.0      0.39     1e+03      10      37 ..     276     305 ..     269     306 .. 0.79
   6 !   23.9   0.1   2.1e-08   5.4e-05       8      38 .]     420     450 ..     413     450 .. 0.93
   7 ?   -1.0   0.0       1.5   3.9e+03      25      38 .]     462     475 ..     454     475 .. 0.79
   8 !   24.6   0.1   1.3e-08   3.2e-05       3      37 ..     481     516 ..     479     517 .. 0.91
   9 !   12.5   0.0   8.6e-05      0.22       5      37 ..     541     573 ..     537     573 .. 0.85
  10 !   20.2   0.0   3.1e-07    0.0008       5      37 ..     582     615 ..     578     615 .. 0.91
  11 !    7.4   0.1    0.0034       8.7       3      38 .]     622     663 ..     620     663 .. 0.77
  12 !   29.0   0.1     5e-10   1.3e-06       3      37 ..     669     704 ..     667     705 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.4e-05
                 SSS.EEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40  10 Hss.vtsla.fspdgawlasGsdDgtvriWd 38 
                 H s vt ++  + d + +a G dDg++r+Wd
  KKY18945.1  72 H-SiVTVICrSQVDEDIFAVGYDDGKIRLWD 101
                 4.235666667778889999**********9 PP

  == domain 2  score: 30.4 bits;  conditional E-value: 1.9e-10
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + ++ GH s vt laf+p+ga lasGs+D  + +Wd
  KKY18945.1 108 IISFNGHkSAVTQLAFDPSGAKLASGSKDTDIILWD 143
                 56899**666*************************9 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00092
                 EEEESSSS.EEEEE...................EETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGHss.vtsla...................fspdgawlasGsdDgtvriWd 38 
                  +l+GH++ +tsl                     s ++ +l+s s+D  +++Wd
  KKY18945.1 151 FKLRGHKDqITSLGflqpqlaepegedglndyaASAHNGFLLSTSKDSLLKMWD 204
                 678999555999988888888888888877777777777788999********9 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0053
                 EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriWd 38 
                  ++l  spd++  ++++ Dg +r+W+
  KKY18945.1 222 CWALGLSPDHSGCITAGNDGELRVWS 247
                 445557888888778888*******5 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.39
                 S.SS.EEEEEEETTSSEEEE.EETTSEEEEE CS
        WD40  10 H.ss.vtslafspdgawlas.GsdDgtvriW 37 
                 H ++  t++ f+p  +++a  Gs  + v +W
  KKY18945.1 276 HgKDrTTAVHFHPRLDYVAVhGS-EKAVELW 305
                 6555569999*******975689.9999999 PP

  == domain 6  score: 23.9 bits;  conditional E-value: 2.1e-08
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  GH ++++++a s+d ++las+s  g+++iW+
  KKY18945.1 420 PGHrTDIRCVALSSDDRMLASAS-QGSLKIWN 450
                 6**999*****************.*******8 PP

  == domain 7  score: -1.0 bits;  conditional E-value: 1.5
                 EEEEETTSEEEEEE CS
        WD40  25 lasGsdDgtvriWd 38 
                 ++ G++Dg++ ++d
  KKY18945.1 462 VVIGTRDGNLELFD 475
                 567*9*****9987 PP

  == domain 8  score: 24.6 bits;  conditional E-value: 1.3e-08
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +l t+++H  +++sl+++pdg+ l+sGs D+t ++W
  KKY18945.1 481 LLDTIKAHdRDIWSLQVHPDGRSLMSGSADKTAKFW 516
                 567899**766************************* PP

  == domain 9  score: 12.5 bits;  conditional E-value: 8.6e-05
                 EEEESSSSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   5 rtltGHssvtslafspdgawlasGsdDgtvriW 37 
                 rtl+  +++ +++fspd +++a ++ D+tv+++
  KKY18945.1 541 RTLKVADDILAVRFSPDARLVAVSTLDNTVKVF 573
                 5666666799***********99999*****95 PP

  == domain 10  score: 20.2 bits;  conditional E-value: 3.1e-07
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  tl GH  +v s++ s d+++++++s D++vr+W
  KKY18945.1 582 LTLYGHkLPVLSMDISYDSKLIVTSSADKNVRVW 615
                 6889**777****************9******** PP

  == domain 11  score: 7.4 bits;  conditional E-value: 0.0034
                 EEEEEESS.SSEEEEEEETTSSE.....EEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgaw.....lasGsdDgtvriWd 38 
                 c + + +H +s+ s++f p+++      ++s+s+D+ v+ +d
  KKY18945.1 622 CHKAFFAHqDSIMSVSFMPNNNEgnghhFFSASKDHLVKYYD 663
                 55667799888*****666666666666899*******9887 PP

  == domain 12  score: 29.0 bits;  conditional E-value: 5e-10
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 ++++l+GH + ++++a+s+dg +l+++s D++vr+W
  KKY18945.1 669 QIQKLDGHhGEIWAMAVSHDGEFLITASHDKSVRLW 704
                 67899***777**************9999******* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   2.6e-06    0.0065      33      81 ..      67     116 ..      43     119 .. 0.73
   2 !   11.2   0.0   0.00013      0.34      37      89 ..     114     165 ..     112     167 .. 0.91
   3 ?   -1.4   0.0       1.2     3e+03      44      70 ..     284     310 ..     275     329 .. 0.57
   4 ?    0.7   0.0      0.26   6.8e+02      37      67 ..     362     396 ..     343     408 .. 0.75
   5 ?    4.2   0.0      0.02        52      35      73 ..     420     457 ..     410     461 .. 0.84
   6 !    9.9   0.0   0.00035      0.89       9      63 ..     461     514 ..     456     526 .. 0.73
   7 !   12.8   0.0   4.3e-05      0.11       2      90 ..     553     639 ..     552     641 .. 0.93
   8 !    6.9   0.0    0.0029       7.4      32      73 ..     673     712 ..     653     733 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.6e-06
  ANAPC4_WD40  33 eedkedsevrsLa.WkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +++++ s v+ ++  + d+ ++av+y+dg++rl d+++++++ s++ +++
   KKY18945.1  67 KDNQNHSIVTVICrSQVDEDIFAVGYDDGKIRLWDSKTATIIISFNGHKS 116
                  4445555555554146799************************9988776 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00013
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  ++s v++La+ p+g  La + +d+ + l d   +  + +l+ ++++ +t+lg+
   KKY18945.1 114 HKSAVTQLAFDPSGAKLASGSKDTDIILWDLVGEVGLFKLRGHKDQ-ITSLGF 165
                  6899***************************999999999999985.999887 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.2
  ANAPC4_WD40  44 LaWkpdgklLavaysdgevrlldaesg 70 
                  ++++p     av  s+ +v+l  + ++
   KKY18945.1 284 VHFHPRLDYVAVHGSEKAVELWRIRNE 310
                  455555555555555555555555443 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.26
  ANAPC4_WD40  37 edsevrsLaWk..pdgklL..avaysdgevrllda 67 
                  ++++vrs+ W   ++gk +  +v++ ++ ++l+++
   KKY18945.1 362 TGGKVRSMDWAgaKSGKSIsiMVSTTNNLIELYNV 396
                  6889******7224677651156677777888776 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.02
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvv 73 
                  +++   +r++a + d+++La a s+g++++ ++ ++ ++
   KKY18945.1 420 PGHRTDIRCVALSSDDRMLASA-SQGSLKIWNVRTQSCI 457
                  567789*************987.789******9998877 PP

  == domain 6  score: 9.9 bits;  conditional E-value: 0.00035
  ANAPC4_WD40   9 LiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevr 63 
                  ++ ++t dg+l++f ++   + ++  +++d+ + sL+ +pdg+ L+ + +d + +
   KKY18945.1 461 IVVIGTRDGNLELFDISSSTLLDT-IKAHDRDIWSLQVHPDGRSLMSGSADKTAK 514
                  566777777777777777777777.677778888888888888888777776655 PP

  == domain 7  score: 12.8 bits;  conditional E-value: 4.3e-05
  ANAPC4_WD40   2 swcptmDLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +++p   L+A+ t d+ + vf ++   ++ +   +++  v s+  + d kl++ + +d +vr+     g++ +++ +++++ +++++++
   KKY18945.1 553 RFSPDARLVAVSTLDNTVKVFFTDSLSLFLT-LYGHKLPVLSMDISYDSKLIVTSSADKNVRVWGLDFGDCHKAFFAHQDS-IMSVSFM 639
                  699**********************999988.699****************************************999995.9888875 PP

  == domain 8  score: 6.9 bits;  conditional E-value: 0.0029
  ANAPC4_WD40  32 leedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvv 73 
                  l  d++ +e+ ++a ++dg++L  a +d +vrl +  ++++ 
   KKY18945.1 673 L--DGHHGEIWAMAVSHDGEFLITASHDKSVRLWQQTDEQIF 712
                  3..788999************************999888875 PP

>> Utp12  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.3   9.4e-20   2.4e-16       3     106 ..     808     927 ..     806     928 .. 0.95

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 9.4e-20
                 HHHHH.HHHSS-TTTHHHHHHCS-CTCHHHHHHHHHHHH.HTT..................TTHHHHHHHHHHHHHHHHHHHHHSH.HHHHHHHHHHHH CS
       Utp12   3 eelleevlekippsdirltvlrLpssyvlkLLeflaerlaeks..................phlelllrwlkallrvHgsylvaspsdlvpaLrslqks 83 
                 +++l+ v++ki +s++++++l+L++++++ L++fl  ++  ++                  + + l+ r+l+++lr H+++l++s+  ++p L++++++
  KKY18945.1 808 DYVLK-VFSKISTSSLQDALLVLSFTHLPSLFTFLGIWVGASPypesevpqpttqsttppiTTILLTSRILFFILRLHHRQLTSSR-LMRPLLETIRTN 904
                 67788.*********************************9999***********99998777**********************99.6*********** PP

                 HHHHHHHHHHHHHHHHHHHHHHH CS
       Utp12  84 lrerlktlskllglnlgrLdyll 106
                 lr+ l+++++++g+nl++L+ l+
  KKY18945.1 905 LRQTLRDMKNVYGYNLAGLRVLA 927
                 ********************986 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.1    0.0031       7.9     165     216 ..      92     144 ..      57     219 .. 0.70
   2 ?    0.8   0.0     0.074   1.9e+02     194     219 ..     226     251 ..     198     260 .. 0.81
   3 !   11.3   0.0   4.7e-05      0.12     144     219 ..     380     454 ..     336     498 .. 0.84
   4 !    6.0   0.0    0.0019       4.9     150     214 ..     508     573 ..     485     579 .. 0.72
   5 !    8.8   0.0   0.00027      0.69     183     216 ..     672     706 ..     648     723 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0031
    Ge1_WD40 165 skygsgelsveeieegllkieeh.sliveaafspdGtalatasedGevkffqv 216
                  + g++ l  +++ + ++ ++ h s +++ af p G+ la  s+d  + ++ +
  KKY18945.1  92 YDDGKIRLWDSKTATIIISFNGHkSAVTQLAFDPSGAKLASGSKDTDIILWDL 144
                 33334444455555677888888469*******************99888765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.074
    Ge1_WD40 194 afspdGtalatasedGevkffqvyle 219
                  +spd     ta +dGe++ + + ++
  KKY18945.1 226 GLSPDHSGCITAGNDGELRVWSIDIS 251
                 6899999999*********9999776 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 4.7e-05
    Ge1_WD40 144 skllvltrgdkaeiwsvdmiaskygsgelsveeieegllkieeh.sliveaafspdGtalatasedGevkffqvyle 219
                   ++v t ++ +e+++v+++++k +s e  +e +++  + +  h + i + a+s+d   la as+ G +k + v  +
  KKY18945.1 380 ISIMVSTTNNLIELYNVAVLNKKIKSDE-PPEYNRSLAVDVPGHrTDIRCVALSSDDRMLASASQ-GSLKIWNVRTQ 454
                 46789999999**********9998765.678888899999999459**************9985.99999998765 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0019
    Ge1_WD40 150 trgdkaeiwsvdmiaskygsgelsveeieegllkieehs.liveaafspdGtalatasedGevkff 214
                 +  + a+ w++++i+++   ++ +  +++ +  +  + +  i    fspd   +a+++ d +vk f
  KKY18945.1 508 SADKTAKFWEFKVIQEEILGTNRKMPKLTLVHSRTLKVAdDILAVRFSPDARLVAVSTLDNTVKVF 573
                 5566778899999988876555555554444333333332689999******************77 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.00027
    Ge1_WD40 183 kieehs.liveaafspdGtalatasedGevkffqv 216
                 k++ h  +i   a+s dG  l tas+d  v+++q 
  KKY18945.1 672 KLDGHHgEIWAMAVSHDGEFLITASHDKSVRLWQQ 706
                 5555544999***********************73 PP

>> Frtz  WD repeat-containing and planar cell polarity effector protein Fritz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   7.5e-05      0.19     196     292 ..      50     148 ..      32     155 .. 0.83
   2 ?   -1.3   0.0      0.19   4.9e+02     269     335 ..     186     255 ..     181     278 .. 0.81
   3 ?    2.2   0.0     0.018        45     271     371 ..     458     560 ..     421     579 .. 0.69
   4 ?   -2.3   0.0       0.4     1e+03     261     289 ..     679     707 ..     677     711 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 7.5e-05
        Frtz 196 levlsyvrteldplsvdfslkqeyqvftveqkvskkkevsa...dsciyelvknklqrvavtsiPlraqvislafnpdedkLllGceDssviLydeerk 291
                  +vl++     ++l+ ++  +q++ ++tv ++ + ++++ a   d     l  +k   + +     ++ v  laf+p+  kL  G++D+ +iL+d + +
  KKY18945.1  50 EDVLCWDIKKGELLN-TWKDNQNHSIVTVICRSQVDEDIFAvgyDDGKIRLWDSKTATIIISFNGHKSAVTQLAFDPSGAKLASGSKDTDIILWDLVGE 147
                 567777777776666.5788999********999999987644477788888888888888888899****************************8766 PP

        Frtz 292 i 292
                 +
  KKY18945.1 148 V 148
                 5 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.19
        Frtz 269 pdedkLllGceDssviLydeerki...tklvkaevvPsliswhpdsaillvasergelqifDlaLspiri 335
                  ++  Ll  ++Ds + ++d +++    t++++a+     +   pd +  + a + gel+++ + +s+++ 
  KKY18945.1 186 AHNGFLLSTSKDSLLKMWDLSMQYcveTHVAQANGECWALGLSPDHSGCITAGNDGELRVWSIDISALKN 255
                 4555567778999999999887643449999999999999**********************99998765 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.018
        Frtz 271 edkL.llGceDssviLydeerkitklv.kaevv.PsliswhpdsaillvasergelqifDlaLspiriqllsed.vePksvldlskyfaasskLlklaw 365
                 +dk+ ++G++D+++ L+d +  + + + ka+ +    ++ hpd+  l+ +s+    + +++    i+  +l  +   Pk +l  s+  ++   +l + +
  KKY18945.1 458 RDKIvVIGTRDGNLELFDISSSTLLDTiKAHDRdIWSLQVHPDGRSLMSGSADKTAKFWEF--KVIQEEILGTNrKMPKLTLVHSRTLKVADDILAVRF 554
                 5665156888888888887665443332433220335677888888888888777777765..457777776652457777777777777777777777 PP

        Frtz 366 srkpev 371
                 s ++ +
  KKY18945.1 555 SPDARL 560
                 755555 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 0.4
        Frtz 261 qvislafnpdedkLllGceDssviLydee 289
                 ++ ++a+++d + L+  ++D+sv L++++
  KKY18945.1 679 EIWAMAVSHDGEFLITASHDKSVRLWQQT 707
                 57789*******************99865 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.028        72      77     131 ..      70     147 ..      48     220 .. 0.65
   2 ?    0.9   0.0     0.087   2.2e+02      91     272 ..     458     484 ..     437     514 .. 0.58
   3 !    8.9   0.1   0.00032      0.81       3      54 ..     591     642 ..     589     674 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.028
   WD40_like  77 enekieedistvkviddklliGtnkGsiyvfskdl.qleevllgqsseIkeikie......................n 131
                 +n++i   i   +v++d +++G + G+i +++    ++ + + g++s + ++  +                      +
  KKY18945.1  70 QNHSIVTVICRSQVDEDIFAVGYDDGKIRLWDSKTaTIIISFNGHKSAVTQLAFDpsgaklasgskdtdiilwdlvgE 147
                 5566666677778999999*********99876640455567899999998887755555555555555555555550 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.087
   WD40_like  91 iddklliGtnkGsiyvfskdlqleevllgqsseIkeikiennkiysLsesafivfdlfsqnieykisvkdiktfeiienkdilligtegeililkknvi 189
                  d+ ++iGt  G++ +f                                                                                  
  KKY18945.1 458 RDKIVVIGTRDGNLELF---------------------------------------------------------------------------------- 474
                 23333344444444443.................................................................................. PP

   WD40_like 190 lqkidvegkPecillvddylivGgsfkyllliNiklnvntfklrlevegiskikkisefvvafsTlcgkvgigDiRdketfkl 272
                                                                                          Di +   +  
  KKY18945.1 475 -------------------------------------------------------------------------DISSSTLLDT 484
                 .........................................................................3333333333 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00032
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd 54 
                 + s+dis +++li+  + d++++v  l+ ++    +   +dS++ v ++ ++
  KKY18945.1 591 VLSMDISYDSKLIVTSSADKNVRVWGLDFGDCHKAFFAHQDSIMSVSFMPNN 642
                 789*********************************************9887 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.36   9.2e+02     189     243 ..     106     157 ..      70     164 .. 0.72
   2 ?    0.0   0.0      0.11   2.7e+02     216     252 ..     234     270 ..     184     311 .. 0.71
   3 ?    2.6   0.1     0.018        45     202     277 ..     446     522 ..     425     542 .. 0.65
   4 ?    6.1   0.1    0.0015       3.9     156     239 ..     610     715 ..     549     745 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.36
                    --SSS--G----GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EEEEEE CS
  Nucleoporin_N 189 silpgvlsgasereeivqlridssrrilytlsskgvirvydlsasngesslksdi 243
                     i+ ++++    +++++ql+ d+s   l + s +  i  +dl  + g ++l++++
     KKY18945.1 106 TIIISFNG---HKSAVTQLAFDPSGAKLASGSKDTDIILWDLVGEVGLFKLRGHK 157
                    45556655...67778888888888888888888888888877666666666555 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.11
                    EEEEETTSEEEEEEEETTCEE-EEEEEEEHHHHHHHH CS
  Nucleoporin_N 216 lytlsskgvirvydlsasngesslksdidirqillea 252
                     +t+ ++g++rv+ +  s+ ++s k+++  ++il+++
     KKY18945.1 234 CITAGNDGELRVWSIDISALKNSTKEQTGSQNILKDR 270
                    4667778888888888777777777777777777766 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.018
                    G-EEEEEEECCT..CEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHHHHHH...HHSCHTTT.CGCTTT-EEEEEEES- CS
  Nucleoporin_N 202 eeivqlridssr..rilytlsskgvirvydlsasngesslksdidirqillea..itesliasa.plaskslkildispvs 277
                     +i+ +r  s    +i+++ +++g+++ +d+s s   s+l  +i   ++ + +   +   ++    +a+k+ k++ +++++
     KKY18945.1 446 LKIWNVRTQSCIrdKIVVIGTRDGNLELFDIS-S---STLLDTIKAHDRDIWSlqVHPDGRSLMsGSADKTAKFWEFKVIQ 522
                    56777777775568999999999999999999.3...33444433333322221222233333335666666666666665 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0015
                    S..SEEEEEEC-SSS-CEEEEEEEEE-SSSS-...--.......................SSS--G----GG-EEEEEEECCTCEEEEEETTSEEE CS
  Nucleoporin_N 156 g..rlyeltyrdssgwpslkckkicltkgglssllsi.......................lpgvlsgasereeivqlridssrrilytlsskgvir 226
                    +  r++ l+  d +  +  + + i + + +                              ++++ +    + ei+++++++  + l+t+s ++ +r
     KKY18945.1 610 KnvRVWGLDFGDCHKAFFAHQDSIMSVSFMPNN---NegnghhffsaskdhlvkyydgdkFEQIQKLDGHHGEIWAMAVSHDGEFLITASHDKSVR 702
                    466666666666666655555554444333331...112222223333333333333333344444677999************************ PP

                    EEEEETTCE.E-EE CS
  Nucleoporin_N 227 vydlsasng.essl 239
                     ++ + +++   + 
     KKY18945.1 703 LWQQT-DEQiFLEE 715
                    **966.54423333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (971 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.53
# Mc/sec: 5548.42
//
Query:       KKY18946.1  [L=380]
Description: putative pectin lyase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-15   56.8   9.1    9.3e-14   51.5   9.1    2.4  1  Pec_lyase_C      Pectate lyase
     0.0039   17.1  16.9      0.034   14.0   7.5    2.5  2  Beta_helix       Right handed beta helix region
  ------ inclusion threshold ------
       0.64   10.2   0.1       0.64   10.2   0.1    2.8  3  Phage_r1t_holin  Putative lactococcus lactis phage r1t holin


Domain annotation for each model (and alignments):
>> Pec_lyase_C  Pectate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   9.1   1.6e-17   9.3e-14      31     211 .]     124     296 ..     111     296 .. 0.85

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 1.6e-17
  Pec_lyase_C  31 isvesnetiiGiiGtngkltnigilvidnssnvivrnlvikt..dgsakdgDairidnsanvWvDHveisdksfeddkttdkdvqfdkaldikkasdy 126
                  i+v s++t+ G  G++g++   g+++++++sn+i++n+ i    +     gDai i++   vW+DHv+ s             +  + ++    as+ 
   KKY18946.1 124 ITVASDKTLLG-EGSAGVIKGKGLRIVSGASNIIIQNIFITDinPKYVWGGDAITINDADMVWIDHVTTSL------------IGRQHIVLGTSASNR 208
                  7899*******.9***************************9999999999****************98653............233455666779*** PP

  Pec_lyase_C 127 vtisnslfeqhkk..tiliGhsddnssqdkGklrvtlhhnvyedvteRaPlvRy.GsiHaynnvyvnkyllsfgvaqsgsvLsEsnsF 211
                  +tisns ++++    ++ +G        d  +  vtl  n++ +   R+P+v +   +Ha nn +  +   +f++++ + v+ E+n+F
   KKY18946.1 209 ITISNSEINGVSSwsATCDGYHYWGMYLDGSNDLVTLKGNYFYHTSGRMPKVQGnTLLHAVNNYWYDISGHAFEIGEGAYVVAEGNVF 296
                  **********9862245566664555556666779***************87762578*****8888889*****************9 PP

>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   7.5   5.8e-06     0.034      23     113 ..     143     253 ..     113     256 .. 0.70
   2 !   13.2   3.0     1e-05      0.06       3     117 ..     234     378 ..     232     379 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.8e-06
                 S-SEEE-SSS-.EEES-EEES.......-SS-SEEE-TT-S-EEES-EEE---SEEE-TT..--S--EEES-EEES-SS-..........SEE-TT-S- CS
  Beta_helix  23 gyGiylrgssnvvienneian.......nsgsGiyilgssnntisnntisdnngggialf..gasnnlienneitdnggs..........Giylnyssn 102
                 g G+ + ++ +++i +n +         ++g+ i i+ +++++i++ t s  +  +i l   ++++ +i+n+ei+  +++          G+yl++s++
  KKY18946.1 143 GKGLRIVSGASNIIIQNIFITdinpkyvWGGDAITINDADMVWIDHVTTSLIGRQHIVLGtsASNRITISNSEINGVSSWsatcdgyhywGMYLDGSND 241
                 556665555555555566666688888888888888888888888888888884444444337777888888888885555555666666888885444 PP

                 .-EEES-EEEST CS
  Beta_helix 103 .ntienNiidnn 113
                  +t+++N++++ 
  KKY18946.1 242 lVTLKGNYFYHT 253
                 488888888765 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1e-05
                 EEE-SS-E..EEESEEEES-SS-SEEE-SSS-.EEES-EEES-SS-SEEE-TT-S-EEES-EEE---.............................SEE CS
  Beta_helix   3 isingssn.vtiknntisnsggyGiylrgssnvvienneiannsgsGiyilgssnntisnntisdnn.............................ggg 71 
                  +++gs++ vt+k+n +++++g   +++g++  +  nn+ ++ sg+ ++i ++++++ ++n++ +                                  
  KKY18946.1 234 MYLDGSNDlVTLKGNYFYHTSGRMPKVQGNTLLHAVNNYWYDISGHAFEIGEGAYVVAEGNVFQNVDevaespidgevftapstsanaacstylghTCQ 332
                 56777888899********99999999999998888999999999999999999999999999777777777777777777777777788888888888 PP

                 E-TT--S--EEES-EEES-SS-SEE-TT-S--EEES-EEESTT--S CS
  Beta_helix  72 ialfgasnnlienneitdnggsGiylnyssnntienNiidnnagsG 117
                 ++ fg+s++  e+n+ +  + sG ++ ++s  t   + +++nag+G
  KKY18946.1 333 VNGFGSSGTFSEDNTSFFSDFSGKNVASASAYTTVVSSVTSNAGYG 378
                 9999999999999999998888888887666666666666666665 PP

>> Phage_r1t_holin  Putative lactococcus lactis phage r1t holin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   4.4      0.37   2.2e+03      39      67 ..      11      39 ..       5      44 .. 0.78
   2 ?   -3.6   0.3       2.2   1.3e+04      23      37 ..     170     184 ..     170     188 .. 0.85
   3 ?   10.2   0.1   0.00011      0.64      31      57 ..     350     376 ..     340     379 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.37
  Phage_r1t_holin 39 aasvaalaAvvSvltSivsaavgdpksas 67
                      a++ a  A+vSv  S+ ++a+g  ++ s
       KKY18946.1 11 FAALVASSAAVSVSGSAEGFAKGVTGGGS 39
                     56777888999**9999999999777655 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.2
  Phage_r1t_holin  23 llgagatglldvdwa 37 
                      ++g +a+ + d d++
       KKY18946.1 170 VWGGDAITINDADMV 184
                      799999999999976 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00011
  Phage_r1t_holin  31 lldvdwaaaasvaalaAvvSvltSivs 57 
                      ++d +  ++as++a ++vvS +tS ++
       KKY18946.1 350 FSDFSGKNVASASAYTTVVSSVTSNAG 376
                      6789999*****************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.32s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2380.78
//
Query:       KKY18947.1  [L=257]
Description: putative arp2 3 complex 34 kda subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-71  238.3   0.0    1.2e-70  238.0   0.0    1.1  1  P34-Arc   Arp2/3 complex, 34 kD subunit p34-Arc


Domain annotation for each model (and alignments):
>> P34-Arc  Arp2/3 complex, 34 kD subunit p34-Arc
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.0   0.0   6.4e-75   1.2e-70       1     183 [.      52     246 ..      52     250 .. 0.96

  Alignments for each domain:
  == domain 1  score: 238.0 bits;  conditional E-value: 6.4e-75
                 EEEE-TTHHHHHTTTHHHHHHHHSTTTE.E---TTSSEEE---TTS------SHHHHHHHHHTHHHHHTSHHHHHHHTHHHH------........... CS
     P34-Arc   1 vsislkcwkelkkygaeellkreYgkllkaepesgydvsllvdleelpedeeekeelikklsllkrnllaapfekafeeqeelseeke........... 88 
                 +s+s+kc+++l kygae++l+reYg+++ +epe+gyd+s+l+dle+lp + e++eel++k+sllkrn++aapfe+af+++++++e ++           
  KKY18947.1  52 ISLSVKCFRDLLKYGAESVLQREYGSYI-VEPEAGYDFSILIDLEKLPPSPEDREELVRKISLLKRNAMAAPFERAFDQFAHMQEDASkytsesapqgi 149
                 799*************************.*****************************************************997766799******** PP

                 HHTTT-EEE--SSS--EEEEE-SSEEEEEEEE--SSSSHHHHHHHHHHHHH-----------EEEE-SSS--S---S-------...---EEEEEEEE CS
     P34-Arc  89 sekeevaaikYrddEaiyikpskdrvtvifstvFkdetDkvlgkvFLqefvdarkraiqsaPqvlfsekepplelrdlkeakkk...envgyvtfvLf 183
                 +e  ev+ i+Yr++Eaiy+k+s+drvtvifst+FkdetD+++gkvFLqefvdar+raiq+aPqvlf++ +pplel++++++ k+    +vg++tf  f
  KKY18947.1 150 NEGGEVMSIHYREEEAIYLKASHDRVTVIFSTIFKDETDRIFGKVFLQEFVDARRRAIQNAPQVLFRS-DPPLELQGIPGVGKTgekGEVGFITFGEF 246
                 99*****************************************************************9.*********999865555999****9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 1634.53
//
Query:       KKY18948.1  [L=1191]
Description: putative udp-n-acetylglucosaminyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.1e-100  335.1   0.0    6.9e-48  163.2   0.0    4.0  3  Glyco_transf_41  Glycosyl transferase family 41
    5.1e-19   67.2   1.1    4.3e-07   29.5   0.1    5.6  5  TPR_1            Tetratricopeptide repeat
    8.7e-16   56.7   1.3    0.00034   20.6   0.1    5.4  5  TPR_8            Tetratricopeptide repeat
    6.4e-15   54.0   2.4    7.4e-05   22.6   0.1    5.9  5  TPR_2            Tetratricopeptide repeat
    2.4e-11   42.8   1.1    0.00088   19.1   0.0    4.7  4  TPR_7            Tetratricopeptide repeat
      4e-11   42.4  12.9     0.0063   16.4   0.3    6.5  6  TPR_10           Tetratricopeptide repeat
    1.3e-10   41.6   2.9     0.0001   22.8   0.3    3.4  3  TPR_19           Tetratricopeptide repeat
    1.5e-10   40.9   1.2     0.0003   21.4   0.1    5.3  4  TPR_14           Tetratricopeptide repeat
    6.5e-10   39.5   4.6    0.00071   20.2   0.0    3.1  3  TPR_16           Tetratricopeptide repeat
    8.5e-10   38.8   5.2     0.0048   17.2   0.0    4.6  3  TPR_12           Tetratricopeptide repeat
    8.7e-10   38.1   0.0      8e-05   22.2   0.0    4.6  4  TPR_11           TPR repeat
    6.1e-09   35.7   3.8       0.84   10.2   0.0    5.2  4  TPR_17           Tetratricopeptide repeat
    1.3e-05   25.4   0.6       0.17   12.1   0.1    2.9  2  TPR_5            Tetratrico peptide repeat
    3.2e-05   24.3   1.8       0.17   12.6   0.1    4.7  5  TPR_6            Tetratricopeptide repeat
    9.6e-05   22.8   3.3       0.15   12.5   0.0    2.7  2  BTAD             Bacterial transcriptional activator domain
    0.00027   20.2   0.4     0.0047   16.2   0.0    2.5  2  TPR_15           Tetratricopeptide repeat
     0.0017   18.5   1.6       0.55   10.4   0.0    3.3  2  TPR_9            Tetratricopeptide repeat
     0.0031   17.0   0.4     0.0097   15.3   0.1    1.8  2  Coatomer_E       Coatomer epsilon subunit
     0.0053   17.0   0.5       0.15   12.3   0.1    2.8  2  ANAPC3           Anaphase-promoting complex, cyclosome, subun
  ------ inclusion threshold ------
      0.052   13.2   1.1         15    5.2   0.2    3.4  3  HrpB1_HrpK       Bacterial type III secretion protein (HrpB1_
       0.22   10.5   0.2       0.39    9.7   0.2    1.3  1  ChAPs            ChAPs (Chs5p-Arf1p-binding proteins)


Domain annotation for each model (and alignments):
>> Glyco_transf_41  Glycosyl transferase family 41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.8   0.1   2.3e-47     2e-44       1     134 [.     707     839 ..     707     889 .. 0.95
   2 !  163.2   0.0   8.1e-51   6.9e-48     283     438 ..     913    1081 ..     906    1096 .. 0.87
   3 !   13.5   0.0     2e-05     0.017     421     471 .]    1128    1178 ..    1105    1178 .. 0.91

  Alignments for each domain:
  == domain 1  score: 151.8 bits;  conditional E-value: 2.3e-47
  Glyco_transf_41   1 lriGyvssdfgnhPtshlmqsiPglhdrekvevfcyalspddgttfrkkiakeaehfvdlsqiqcngkaadrikedGihilvnmnGytkGarne 94 
                      l +Gyvssdf nhP +hlmq + g+hd ++   fcya +p dg+ +r+ki ++a  f d s  + + k   +i +d ihil+n+nGyt+Garne
       KKY18948.1 707 LNVGYVSSDFNNHPLAHLMQNVFGFHDPSRARAFCYATTPSDGSIHRQKIEADAPVFYDASSWPME-KLVRQIVNDQIHILINLNGYTRGARNE 799
                      689***********************************************************9976.78899********************** PP

  Glyco_transf_41  95 ifalrPaPiqvmwlGyPgtsGasfmdyiitdkvtsPlela 134
                      ifa rPaPi + ++G+ g+ Ga++ dy+++d++  P e+ 
       KKY18948.1 800 IFAARPAPISMSFMGFAGSLGAEWCDYLLSDEICIPHETL 839
                      *********************************9998765 PP

  == domain 2  score: 163.2 bits;  conditional E-value: 8.1e-51
  Glyco_transf_41  283 glPedaivycnfnqlykidPstlemwvnilkrvPnsvlwllrfPavGeanvlataael..glekeriifsnvaakeehvrrGqladvcldtP 372 
                        l +dai++ nfnqlykidP+t+++w++il rvPns+lwllrfP  Ge+++l+ta+       ++r+if++va+k+ h+ r ++ d+ ldtP
       KKY18948.1  913 DLADDAIIFGNFNQLYKIDPTTFRTWLRILSRVPNSILWLLRFPDLGEQHLLSTARLWagETVAKRVIFTDVASKNTHISRARVVDLFLDTP 1004
                       589*************************************************999765326789**************************** PP

  Glyco_transf_41  373 lcnGhttgmdvlwaGtPvvtlplet..lasrvaasqlatl......G...vpeliaksreeyediavklGtdkeylk 438 
                        cn htt+ dv+w+GtPv+t+   +  + sr+a s + +       G    +eli +s+++ye+ a++l +  +y  
       KKY18948.1 1005 ECNAHTTSADVVWSGTPVLTFGRRAykMCSRMAGSIVSSAlpegpaGddaRKELIVRSEKDYEESAIRLANSLQYTP 1081
                       *********************87653389***999887532443332222579*****************9998865 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 2e-05
  Glyco_transf_41  421 eeyediavklGtdkeylkairakvwkaraestlfnvkkyaadleklykklw 471 
                        +y+d+  ++ + + +l  +r+ +w++r  s+lfn++++++dle+ y++ w
       KKY18948.1 1128 CHYQDMPSTYCKGSGRLMDLREMLWRHRWVSRLFNTRRWVHDLETGYEEAW 1178
                       579999999************************************999887 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00046      0.39      10      34 .]      43      67 ..      41      67 .. 0.86
   2 !   11.8   0.0   0.00019      0.16       2      33 ..      69     100 ..      68     101 .. 0.96
   3 ?   -0.3   0.1       1.3   1.1e+03       7      28 ..     212     233 ..     210     236 .. 0.89
   4 !    8.3   0.0    0.0024         2       4      29 ..     422     447 ..     420     452 .. 0.91
   5 !   29.5   0.1   5.1e-10   4.3e-07       3      34 .]     455     486 ..     454     486 .. 0.97

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00046
                HHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1 10 ayfklgkydeAleyyekALelnPnn 34
                + +  g++++A+  y++ L ++ ++
  KKY18948.1 43 LAHGIGDFEKAISMYQRILDHDRDH 67
                56667****************9986 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00019
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                 +al n+++ + +l++ +eA  +  +A++l+P+
  KKY18948.1  69 EALSNIAASLVHLNRKEEAASFWMEAVKLRPS 100
                 89****************************97 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.3
                 HHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekAL 28 
                 ++n++f l +y    +++e+A+
  KKY18948.1 212 KANMLFGLRDYHGTAAAFEEAV 233
                 799****************997 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.0024
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALe 29 
                 + nlG ++   g+   A++ ye A++
  KKY18948.1 422 YTNLGSLLKDVGQVSAAVKMYEHAVQ 447
                 99********************9987 PP

  == domain 5  score: 29.5 bits;  conditional E-value: 5.1e-10
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                 al nl+na+  +g+  +A+++y++A++ nP++
  KKY18948.1 455 ALANLANALKDQGRMSDAIKFYQRAVKANPDF 486
                 899***************************97 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0023         2       6      32 ..      39      65 ..      35      67 .. 0.85
   2 !    8.2   0.0    0.0038       3.3       2      33 ..      69     100 ..      68     101 .. 0.93
   3 ?   -1.1   0.0       3.5     3e+03       5      30 ..     210     235 ..     208     236 .. 0.85
   4 !   13.0   0.0   0.00011     0.092       2      28 ..     420     446 ..     419     449 .. 0.94
   5 !   20.6   0.1     4e-07   0.00034       3      33 ..     455     485 ..     454     486 .. 0.95

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0023
                HHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8  6 nlgsiylklgdyeeAkeyyekaleldp 32
                + g++ +  gd+e+A++ y++ l+ d+
  KKY18948.1 39 LAGCLAHGIGDFEKAISMYQRILDHDR 65
                5789****************9887665 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0038
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ea+ n++  +  l+++eeA ++ ++a++l+p+
  KKY18948.1  69 EALSNIAASLVHLNRKEEAASFWMEAVKLRPS 100
                 788999999*********************96 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 3.5
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekalel 30 
                 + +++ ++ l dy+   +++e+a+ +
  KKY18948.1 210 HAKANMLFGLRDYHGTAAAFEEAVLI 235
                 568999999999999999***99866 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 0.00011
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 ++y nlgs++++ g+  +A++ ye+a+
  KKY18948.1 420 HLYTNLGSLLKDVGQVSAAVKMYEHAV 446
                 68***********************98 PP

  == domain 5  score: 20.6 bits;  conditional E-value: 4e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 a+ nl+++++++g++  A+++y++a++++pd
  KKY18948.1 455 ALANLANALKDQGRMSDAIKFYQRAVKANPD 485
                 689***************************8 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0047         4       8      34 .]      41      67 ..      38      67 .. 0.88
   2 !   13.7   0.0   5.8e-05      0.05       2      32 ..      69      99 ..      68     101 .. 0.95
   3 ?   -1.0   0.1         3   2.6e+03       6      29 ..     211     234 ..     208     236 .. 0.83
   4 ?    4.0   0.0     0.078        66       3      30 ..     421     448 ..     419     452 .. 0.90
   5 !   22.6   0.1   8.6e-08   7.4e-05       3      33 ..     455     485 ..     453     486 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0047
       TPR_2  8 GlayyklgdyeeAleafekAleldPnn 34
                G+++   gd+e+A+  +++ l +d ++
  KKY18948.1 41 GCLAHGIGDFEKAISMYQRILDHDRDH 67
                7778888***************99876 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 5.8e-05
       TPR_2  2 ealynlGlayyklgdyeeAleafekAleldP 32
                eal n++ ++ +l++ eeA+ ++ +A++l P
  KKY18948.1 69 EALSNIAASLVHLNRKEEAASFWMEAVKLRP 99
                89***************************99 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 3
       TPR_2   6 nlGlayyklgdyeeAleafekAle 29 
                 + ++ ++ l dy   ++afe+A+ 
  KKY18948.1 211 AKANMLFGLRDYHGTAAAFEEAVL 234
                 678999999999999999999986 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.078
       TPR_2   3 alynlGlayyklgdyeeAleafekAlel 30 
                 ++ nlG ++   g+   A++ +e A++ 
  KKY18948.1 421 LYTNLGSLLKDVGQVSAAVKMYEHAVQC 448
                 6889*********************985 PP

  == domain 5  score: 22.6 bits;  conditional E-value: 8.6e-08
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 al nl++a+  +g+  +A++++++A++ +P+
  KKY18948.1 455 ALANLANALKDQGRMSDAIKFYQRAVKANPD 485
                 899***************************8 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0014       1.2      12      33 ..      47      66 ..      38      69 .. 0.75
   2 ?    0.5   0.0      0.95   8.1e+02       1      21 [.      70      90 ..      70      90 .. 0.93
   3 !    8.1   0.0    0.0035         3       2      27 ..     422     445 ..     421     447 .. 0.92
   4 !   19.1   0.0     1e-06   0.00088       1      30 [.     455     482 ..     455     488 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0014
       TPR_7 12 lGdyeeAielyeqsLaltkdpe 33
                 Gd+e+Ai+ y++   l+ d +
  KKY18948.1 47 IGDFEKAISMYQR--ILDHDRD 66
                7************..6666555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.95
       TPR_7  1 aLlnLarlysrlGdyeeAiel 21
                aL+n+a   + l++ eeA+++
  KKY18948.1 70 ALSNIAASLVHLNRKEEAASF 90
                799***************985 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0035
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLa 27 
                 + nL++l  ++G+ + A++ ye   a
  KKY18948.1 422 YTNLGSLLKDVGQVSAAVKMYEH--A 445
                 78********************8..4 PP

  == domain 4  score: 19.1 bits;  conditional E-value: 1e-06
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltk 30 
                 aL nLa++  ++G++++Ai++y++  a+  
  KKY18948.1 455 ALANLANALKDQGRMSDAIKFYQR--AVKA 482
                 79**********************..7665 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.016        14      24      40 ..      49      67 ..      48      69 .. 0.82
   2 !    6.6   0.1    0.0083       7.1       4      32 ..      70      98 ..      68      98 .. 0.91
   3 ?   -0.4   0.1       1.3   1.2e+03       9      30 ..     213     234 ..     206     236 .. 0.87
   4 ?    0.6   0.2      0.64   5.5e+02       2      14 ..     360     372 ..     359     375 .. 0.87
   5 !   15.4   0.0   1.4e-05     0.012       5      31 ..     422     448 ..     420     449 .. 0.95
   6 !   16.4   0.3   7.3e-06    0.0063       4      30 ..     455     481 ..     454     483 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.016
      TPR_10 24 lleealairrrllG..pdH 40
                ++e+a+++++r+l   +dH
  KKY18948.1 49 DFEKAISMYQRILDhdRDH 67
                58***********955555 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0083
      TPR_10  4 slnNLanalrqrgrydeAealleealair 32
                +l+N+a+ l +++r +eA  +  ea+ +r
  KKY18948.1 70 ALSNIAASLVHLNRKEEAASFWMEAVKLR 98
                89*****************9999998765 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.3
      TPR_10   9 analrqrgrydeAealleeala 30 
                 an+l+ +++y++  a +eea+ 
  KKY18948.1 213 ANMLFGLRDYHGTAAAFEEAVL 234
                 99******************85 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.64
      TPR_10   2 AsslnNLanalrq 14 
                 As+ nN++ +l++
  KKY18948.1 360 ASTANNIGLLLTS 372
                 99*******9986 PP

  == domain 5  score: 15.4 bits;  conditional E-value: 1.4e-05
      TPR_10   5 lnNLanalrqrgrydeAealleealai 31 
                 ++NL+ +l ++g+  +A++++e+a+++
  KKY18948.1 422 YTNLGSLLKDVGQVSAAVKMYEHAVQC 448
                 89***********************97 PP

  == domain 6  score: 16.4 bits;  conditional E-value: 7.3e-06
      TPR_10   4 slnNLanalrqrgrydeAealleeala 30 
                 +l NLanal ++gr  +A +++++a+ 
  KKY18948.1 455 ALANLANALKDQGRMSDAIKFYQRAVK 481
                 689**********************96 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0    0.0004      0.34       6      57 ..      14      66 ..      12      66 .. 0.83
   2 !   16.6   0.1   9.5e-06    0.0081       5      46 ..      48      89 ..      44     112 .. 0.86
   3 !   22.8   0.3   1.2e-07    0.0001       5      60 ..     433     488 ..     430     494 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0004
      TPR_19  6 dyaeAlalleqalqedpknaearl.lLAeallal.gqldeAealLdalpeedpd 57
                +  eAl++le++ qe  k +++   lLA +l    g++++A+ + ++++++d+d
  KKY18948.1 14 KASEALEILENLCQE-SKEEWVDGvLLAGCLAHGiGDFEKAISMYQRILDHDRD 66
                6779*******6555.55555555478******99****************998 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 9.5e-06
      TPR_19  5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAea 46
                gd++ A+++++++l++d ++ ea+ + A  l+ l++ +eA  
  KKY18948.1 48 GDFEKAISMYQRILDHDRDHVEALSNIAASLVHLNRKEEAAS 89
                8***************************************75 PP

  == domain 3  score: 22.8 bits;  conditional E-value: 1.2e-07
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddar 60 
                 g+  +A++++e a q + + + a+++LA+al  +g+  +A++  +++ +++pd a+
  KKY18948.1 433 GQVSAAVKMYEHAVQCEGDFDIALANLANALKDQGRMSDAIKFYQRAVKANPDFAE 488
                 8999*************************************************654 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0031       2.6      15      38 ..      48      71 ..      37      77 .. 0.84
   2 ?    1.9   0.1      0.63   5.4e+02       2      43 ..      69     110 ..      68     111 .. 0.88
   3 ?    6.1   0.0     0.029        25       7      42 ..     425     460 ..     420     462 .. 0.87
   4 !   21.4   0.1   3.5e-07    0.0003       3      42 ..     455     494 ..     453     496 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0031
      TPR_14 15 GdpdeAiallrralalaPddaeaw 38
                Gd+++Ai +++r+l+++ d+ ea+
  KKY18948.1 48 GDFEKAISMYQRILDHDRDHVEAL 71
                9******************99997 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.63
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 eal  +a+ l +l + +eA+    +a++l P++ ea  +l+ 
  KKY18948.1  69 EALSNIAASLVHLNRKEEAASFWMEAVKLRPSQFEAVEHLVA 110
                 66777889999999**********************999976 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.029
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawllla 42 
                 l+++l   G+  +A+++++ a++   d++ a+  la
  KKY18948.1 425 LGSLLKDVGQVSAAVKMYEHAVQCEGDFDIALANLA 460
                 8899999**************998888888888877 PP

  == domain 4  score: 21.4 bits;  conditional E-value: 3.5e-07
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 al+ la al  +G+  +Ai+ ++ra++++Pd+aea   la
  KKY18948.1 455 ALANLANALKDQGRMSDAIKFYQRAVKANPDFAEAVCGLA 494
                 67789******************************98887 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   8.3e-07   0.00071       9      56 ..      46      90 ..      38     101 .. 0.84
   2 !   19.9   0.2     1e-06   0.00089       2      66 ..     424     485 ..     423     487 .. 0.93
   3 !   17.9   0.2   4.2e-06    0.0036       2      41 ..     458     494 ..     457     497 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 8.3e-07
      TPR_16  9 ragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaal 56
                  gd+++A+ ++++ l+ d    d++eAl + + ++ +++r +eAa +
  KKY18948.1 46 GIGDFEKAISMYQRILDHD---RDHVEALSNIAASLVHLNRKEEAASF 90
                569****************...***********************954 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 1e-06
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                 +l+ ++ + g+  +A++++e a+       d   Al +l++a+  qgr+ +A+ +y++a++a pd
  KKY18948.1 424 NLGSLLKDVGQVSAAVKMYEHAVQCE---GDFDIALANLANALKDQGRMSDAIKFYQRAVKANPD 485
                 678899999*****************...89999**************************99997 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 4.2e-06
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllg 41 
                 +la+a+ ++g+  dA++ +++a+k++   Pd aeA  +l+
  KKY18948.1 458 NLANALKDQGRMSDAIKFYQRAVKAN---PDFAEAVCGLA 494
                 79************************...99999977766 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   5.6e-06    0.0048      10      75 ..      40      98 ..      35     100 .. 0.72
   2 ?    0.9   0.1      0.65   5.6e+02       4      33 ..     207     236 ..     204     246 .. 0.83
   3 !   12.5   0.1   0.00015      0.13       5      31 ..     455     481 ..     451     483 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.6e-06
      TPR_12 10 aavlrr.lgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75
                a +l++  g++++A++++++ l+         + + +++l n++  +  l+r eeA ++  ea++++
  KKY18948.1 40 AGCLAHgIGDFEKAISMYQRILDHD-------R-DHVEALSNIAASLVHLNRKEEAASFWMEAVKLR 98
                5555444555555555555555555.......5.5599*******************9988888877 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.65
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleia 33 
                 ++ +  a++l+ l +y+   + +e+a+ ia
  KKY18948.1 207 ALIHAKANMLFGLRDYHGTAAAFEEAVLIA 236
                 455689********************9998 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 0.00015
      TPR_12   5 alnnlaavlrrlgrydeAlellekale 31 
                 al nla++l  +gr+ +A++++++a+ 
  KKY18948.1 455 ALANLANALKDQGRMSDAIKFYQRAVK 481
                 454788888888888888888888864 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.011       9.5       8      37 ..      48      77 ..      47      82 .. 0.93
   2 ?    0.5   0.0      0.58   4.9e+02       9      30 ..      83     104 ..      77     108 .. 0.80
   3 !   10.3   0.0   0.00052      0.45       2      42 .]     427     467 ..     426     467 .. 0.92
   4 !   22.2   0.0   9.4e-08     8e-05       2      35 ..     461     494 ..     460     497 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.011
      TPR_11  8 GkyeeAieaYkkAlkldPdnaeayynLGla 37
                G++e+Ai  Y++ l+ d d +ea++n+++ 
  KKY18948.1 48 GDFEKAISMYQRILDHDRDHVEALSNIAAS 77
                99************************9975 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.58
      TPR_11   9 kyeeAieaYkkAlkldPdnaea 30 
                 + eeA   + +A+kl+P++ ea
  KKY18948.1  83 RKEEAASFWMEAVKLRPSQFEA 104
                 55777777889*******9997 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00052
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                  ++ + G+  +A++ Y+ A++   d+  a+ nL++a+  qG
  KKY18948.1 427 SLLKDVGQVSAAVKMYEHAVQCEGDFDIALANLANALKDQG 467
                 5666779*******************************998 PP

  == domain 4  score: 22.2 bits;  conditional E-value: 9.4e-08
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLG 35 
                 +a+ +qG+  +Ai+ Y++A+k +Pd+aea ++L+
  KKY18948.1 461 NALKDQGRMSDAIKFYQRAVKANPDFAEAVCGLA 494
                 999**************************99886 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.012        10       1      32 [.      56      87 ..      56      88 .. 0.95
   2 ?    6.9   0.0     0.011       9.1       6      32 ..     412     438 ..     407     440 .. 0.82
   3 !   10.2   0.0   0.00099      0.84       1      32 [.     441     472 ..     441     474 .. 0.90
   4 !    8.9   0.0    0.0025       2.1       1      23 [.     475     497 ..     475     500 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.012
      TPR_17  1 lylkaleldPnnadaynnLAelllknGdlmtA 32
                +y++ l++d ++++a+ n A  l +++++++A
  KKY18948.1 56 MYQRILDHDRDHVEALSNIAASLVHLNRKEEA 87
                6**********************999999987 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.011
      TPR_17   6 leldPnnadaynnLAelllknGdlmtA 32 
                 l ld  ++ +y+nL+ ll+  G+   A
  KKY18948.1 412 LYLDSRHSHLYTNLGSLLKDVGQVSAA 438
                 66788999**************98776 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00099
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtA 32 
                 +y+ a++++ +   a+ nLA++l+ +G+  +A
  KKY18948.1 441 MYEHAVQCEGDFDIALANLANALKDQGRMSDA 472
                 69*************************85555 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.0025
      TPR_17   1 lylkaleldPnnadaynnLAell 23 
                 +y++a++ +P+ a+a + LA+ l
  KKY18948.1 475 FYQRAVKANPDFAEAVCGLATSL 497
                 6*******************866 PP

>> TPR_5  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1    0.0002      0.17       7      97 ..      40     125 ..      14     142 .. 0.83
   2 !   10.4   0.0   0.00067      0.57      34     101 ..     415     480 ..     404     492 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
       TPR_5   7 ragarDstGhedkavplYrraLaeGLagarrrratiqLassLRnlGeaeealaLLraeleapsdelddalaaflaLvLsdlgrereavsiv 97 
                 +++    +G+ +ka+ +Y+r L++  +      a   +a+sL  l + eea     + ++ ++ ++ +a++ ++aL L +  r +ea+ ++
  KKY18948.1  40 AGCLAHGIGDFEKAISMYQRILDHDRD---HVEALSNIAASLVHLNRKEEAASFWMEAVKLRPSQF-EAVEHLVAL-LCSSHRGKEALHVI 125
                 57888999***************8655...55678899****************999999999888.589999988.45667788887643 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00067
       TPR_5  34 garrrratiqLassLRnlGeaeealaLLraeleapsdelddalaaflaLvLsdlgrereavsivllal 101
                 ++r  ++   L s L+ +G++  a+++ ++ ++ ++d +d al a la +L d+gr  +a++    a+
  KKY18948.1 415 DSRHSHLYTNLGSLLKDVGQVSAAVKMYEHAVQCEGD-FDIAL-ANLANALKDQGRMSDAIKFYQRAV 480
                 6778888899*****************9999987765.78887.56899***********99876665 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       3.6     3e+03      15      28 ..      14      27 ..       9      29 .. 0.82
   2 ?    5.7   0.0     0.032        28       6      28 ..      39      62 ..      37      66 .. 0.81
   3 ?   -0.2   0.0       2.3     2e+03       1      31 [.      69      99 ..      69     100 .. 0.87
   4 ?   -1.8   0.0       7.4   6.3e+03       6      24 ..     425     443 ..     404     447 .. 0.73
   5 !   12.6   0.1    0.0002      0.17       2      32 ..     455     485 ..     454     485 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 3.6
                HHHHHHHHHHHHHH CS
       TPR_6 15 dtdkAlealerlik 28
                ++++Ale+le+l +
  KKY18948.1 14 KASEALEILENLCQ 27
                6789******9976 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.032
                HHHHHHH.HHHHHHHHHHHHHHHH CS
       TPR_6  6 lalsyrk.lgdtdkAlealerlik 28
                la ++    gd +kA+ +++r+++
  KKY18948.1 39 LAGCLAHgIGDFEKAISMYQRILD 62
                5556676459***********986 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 2.3
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6  1 dAlyklalsyrklgdtdkAlealerlikeYP 31
                +Al ++a s+  l+++++A   + + +k  P
  KKY18948.1 69 EALSNIAASLVHLNRKEEAASFWMEAVKLRP 99
                68889999****99*****999988888777 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 7.4
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAleale 24 
                 l+ +++  g+ ++A++++e
  KKY18948.1 425 LGSLLKDVGQVSAAVKMYE 443
                 4444444379999999998 PP

  == domain 5  score: 12.6 bits;  conditional E-value: 0.0002
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYPd 32 
                 Al +la +++ +g+ ++A++ ++r +k  Pd
  KKY18948.1 455 ALANLANALKDQGRMSDAIKFYQRAVKANPD 485
                 7889***********************9998 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   1.0    0.0013       1.1      58     127 ..      64     133 ..      13     134 .. 0.90
   2 !   12.5   0.0   0.00018      0.15      64     124 ..     421     481 ..     413     483 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
        BTAD  58 eelrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerlrrlLa 127
                 +++ +eal  +a+ +++l+r eea++   ++v++ P + +++++l + l+ s r  eAL v e + r L+
  KKY18948.1  64 DRDHVEALSNIAASLVHLNRKEEAASFWMEAVKLRPSQFEAVEHLVALLCSSHRGKEALHVIELVERALR 133
                 67889*******************************************************9998888875 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
        BTAD  64 alealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerlrr 124
                  ++ l  ++  +G+ ++a++ +e +v+++   + + + l  Al  +Gr ++A++ Y+r+++
  KKY18948.1 421 LYTNLGSLLKDVGQVSAAVKMYEHAVQCEGDFDIALANLANALKDQGRMSDAIKFYQRAVK 481
                 566777778899**********************************************976 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.45   3.9e+02     149     203 ..      71     125 ..      67     136 .. 0.82
   2 !   16.2   0.0   5.5e-06    0.0047      96     181 ..     402     488 ..     399     494 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.45
      TPR_15 149 llaraelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrell 203
                 l+  a++    +++++A     eA++l p + e+ + l+ ll  + r +e+ +++
  KKY18948.1  71 LSNIAASLVHLNRKEEAASFWMEAVKLRPSQFEAVEHLVALLCSSHRGKEALHVI 125
                 566788888999999***************9999999999999888888854444 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 5.5e-06
      TPR_15  96 aarlaekgwrrfrsprlLssalellerakdydriaellksleeeeaaeqs.aafllaraelyrqegqtdaAlrdyreAlalapdsse 181
                 a++la + +  + ++r+   + +l+  +kd+ ++ + +k  e   + e++    l+ +a++ +++g+  +A++ y++A++++pd +e
  KKY18948.1 402 AIALAFYNYGLYLDSRHSHLYTNLGSLLKDVGQVSAAVKMYEHAVQCEGDfDIALANLANALKDQGRMSDAIKFYQRAVKANPDFAE 488
                 899999****************************************99663788999**************************9655 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.022        19       9      48 ..      48      87 ..      11      99 .. 0.74
   2 !   10.4   0.0   0.00064      0.55      14      60 ..     404     450 ..     401     464 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.022
       TPR_9  9 edweralavverllllaPddpeerrdRGlllaqlGclsaA 48
                 d+e+a+ +++r+l  + d++e +   +  l++l++ ++A
  KKY18948.1 48 GDFEKAISMYQRILDHDRDHVEALSNIAASLVHLNRKEEA 87
                3667777777777777777777777777777777766666 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00064
       TPR_9  14 alavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 ala ++  l+l++++ +++   G ll  +G++saA++  e++++ ++
  KKY18948.1 404 ALAFYNYGLYLDSRHSHLYTNLGSLLKDVGQVSAAVKMYEHAVQCEG 450
                 89999999*********************************997665 PP

>> Coatomer_E  Coatomer epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.1e-05    0.0097     182     275 ..      14     108 ..       7     111 .. 0.80
   2 ?   -1.5   0.0       1.5   1.3e+03      66     103 ..     436     473 ..     428     480 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHHHHHHS---HHHHHHHH.HHHHHTT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-TT-HHHHHH CS
  Coatomer_E 182 kiqdAyyifqelsekykstplllngkA.vvslllgryeeAeslLkeaLdkdakdeetLiNlvvaaqhlgkdaevsernlsqlklshpehklvkdl 275
                 k  +A+ i ++l++  k+  +     A +    +g++e+A s+ +  Ld+d  + e+L+N+  +  hl++ +e+ +  ++ +kl  ++ + v++l
  KKY18948.1  14 KASEALEILENLCQESKEEWVDGVLLAgCLAHGIGDFEKAISMYQRILDHDRDHVEALSNIAASLVHLNRKEEAASFWMEAVKLRPSQFEAVEHL 108
                 67788889999988866543322222304556789***************************************999999999988888777765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHH-STTHHHHHHHHHHHHHS----S-HH CS
  Coatomer_E  66 lqAvrllaeylnspsrkeeilaelkeeladseiesnev 103
                 ++Av+++ ++++ + + + +la+l + l d+   s+++
  KKY18948.1 436 SAAVKMYEHAVQCEGDFDIALANLANALKDQGRMSDAI 473
                 67888888888888888888888888888887766654 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   0.00018      0.15       6      76 ..      16      88 ..      12      92 .. 0.92
   2 ?    1.4   0.0      0.45   3.9e+02       1      30 [.     465     494 ..     432     498 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00018
                HHHHHHHHHHH.HHH--HHHHHHHHHHHHHT.T-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHH CS
      ANAPC3  6 knAiflaerllaaetespedayllAlclyln.gqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAi 76
                 +A+ ++e l++ ++e   d  llA cl +  g++++A+  +++  + +  + +++  +A +l+ L++ eeA 
  KKY18948.1 16 SEALEILENLCQESKEEWVDGVLLAGCLAHGiGDFEKAISMYQRIlDHDRDHVEALSNIAASLVHLNRKEEAA 88
                689999*****8889999999*******9966****************************************7 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.45
                 HTT-HHHHHHHHHHHH.HHH--HHHHHHHH CS
      ANAPC3   1 dqnnyknAiflaerllaaetespedayllA 30 
                 dq++  +Ai ++ r+++a+++ +e++  lA
  KKY18948.1 465 DQGRMSDAIKFYQRAVKANPDFAEAVCGLA 494
                 456666666666666666666666666555 PP

>> HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.055        47      59      91 ..      13      45 ..      10      49 .. 0.90
   2 ?    5.2   0.2     0.018        15       5      73 ..      62     130 ..      58     138 .. 0.87
   3 ?    0.0   0.0      0.73   6.2e+02      41      67 ..     583     608 ..     559     618 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.055
  HrpB1_HrpK 59 grweeAlrlLreveaeasgtpyakaLlAlcLaa 91
                ++ +eAl +L+++++e++++ +   LlA cLa+
  KKY18948.1 13 RKASEALEILENLCQESKEEWVDGVLLAGCLAH 45
                5678**********9999999999*******86 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.018
  HrpB1_HrpK   5 qcskelvggLievlslalasedtedaellLdalrvLrPevaeldllegvlliergrweeAlrlLrevea 73 
                   +++ v++L ++++  ++ +++e+a+    +   LrP+  e+    + ll + +r +eAl++++ ve 
  KKY18948.1  62 DHDRDHVEALSNIAASLVHLNRKEEAASFWMEAVKLRPSQFEAVEHLVALLCSSHRGKEALHVIELVER 130
                 5678899*********************9999999***98888888888999999*******9998874 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.73
  HrpB1_HrpK  41 rPevaeldllegvlliergrweeAlrl 67 
                 rP+   ++l ++++  ++++we+A+ +
  KKY18948.1 583 RPSSLSAQLRDVLMSWHNHNWEGAR-I 608
                 8********************9984.4 PP

>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.2   0.00046      0.39     184     289 ..      14     123 ..       7     128 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00046
                 -HHHHHHHHHHHHTT-GG..GH.HHHHHHHHHTT-HH.HHHHHHHHHH-SSS-HHHHHHHHHHHHHHSS--HHHHHHHHHHHHH-TT-HHHHHHHHHHH CS
       ChAPs 184 rydralellekLkeeepe..vv.illarvllladeEv.davkllneeleeeekdaelLllqaefllskkkeelAlevakravksaPsefktWalLvkvY 278
                 + ++ale+le+L +e+ e  v  +lla  l     +  +a+ + ++ l+++++ +e L+  a  l++ +++e A +  ++avk+ Ps+f+    Lv   
  KKY18948.1  14 KASEALEILENLCQESKEewVDgVLLAGCLAHGIGDFeKAISMYQRILDHDRDHVEALSNIAASLVHLNRKEEAASFWMEAVKLRPSQFEAVEHLVALL 112
                 667888888888776655223225666665544333317899888888888888*****************************************9999 PP

                 HHTT-HHHHHH CS
       ChAPs 279 ikledienALl 289
                  + +  ++AL 
  KKY18948.1 113 CSSHRGKEALH 123
                 88888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.93u 0.28s 00:00:01.21 Elapsed: 00:00:00.50
# Mc/sec: 7178.98
//
Query:       KKY18949.1  [L=1169]
Description: putative transcription factor tfiiic complex subunit sfc4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-24   83.8   0.2    9.5e-24   83.0   0.2    1.4  1  Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
    4.4e-16   59.2   5.4    2.6e-06   27.8   0.1    5.1  4  TPR_19           Tetratricopeptide repeat
    8.2e-14   51.9   0.1    1.7e-13   50.9   0.1    1.6  1  Ribosomal_L11    Ribosomal protein L11, RNA binding domain
      2e-09   36.8  25.3      0.097   12.8   0.0    9.0  9  TPR_2            Tetratricopeptide repeat
    1.2e-08   34.4   6.2       0.16   12.1   0.0    6.3  6  TPR_7            Tetratricopeptide repeat
    1.2e-08   34.4  13.4      0.047   13.5   0.1    7.9  7  TPR_1            Tetratricopeptide repeat
    1.5e-08   34.8  12.2       0.21   11.9   0.0    6.2  5  TPR_12           Tetratricopeptide repeat
      2e-08   34.7  15.2    2.9e-06   27.8   0.2    5.2  4  TPR_16           Tetratricopeptide repeat
    6.9e-08   32.1   7.2       0.48   10.8   0.1    6.6  6  TPR_8            Tetratricopeptide repeat
    9.4e-08   32.3  17.3        2.4    9.2   0.0    8.5  9  TPR_14           Tetratricopeptide repeat
    7.1e-07   28.8   6.8      0.026   14.2   0.2    6.0  6  TPR_11           TPR repeat
    3.4e-06   27.2   7.3       0.12   12.6   0.3    4.5  4  ANAPC3           Anaphase-promoting complex, cyclosome, subun
    7.3e-06   26.1   2.2      0.013   15.7   0.3    4.3  4  TPR_9            Tetratricopeptide repeat
    9.9e-06   25.6   2.9        4.7    7.8   0.0    5.7  4  TPR_17           Tetratricopeptide repeat
     0.0022   17.0   0.6      0.023   13.7   0.1    2.6  3  NatB_MDM20       N-acetyltransferase B complex (NatB) non cat
     0.0047   17.5   8.9         84    4.1   0.0    6.8  6  TPR_6            Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   16.1   4.8       0.96    9.8   0.2    3.7  3  TPR_20           Tetratricopeptide repeat
      0.037   13.0   0.1      0.071   12.1   0.1    1.4  1  ChAPs            ChAPs (Chs5p-Arf1p-binding proteins)
       0.05   13.8   1.9       0.16   12.2   1.9    1.8  1  NEXCaM_BD        Regulatory region of Na+/H+ exchanger NHE bi
       0.13   12.6   0.0          5    7.6   0.0    3.2  2  PPR              PPR repeat
       0.19   11.6   0.1       0.19   11.6   0.1    6.3  8  TPR_10           Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.2   1.1e-26   9.5e-24       3      65 .]    1009    1073 ..    1007    1073 .. 0.94

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 1.1e-26
  Ribosomal_L11_N    3 k...vvkvvklrvpaGkAtpaPplGpaLGplGlnikkfckefnkaTkdkkglripVkitvyqdrsf 65  
                       +   +vkv++lr ++G+++++++l+p++GplGl++kk++++++kaT+d+kglr++Vk+t+ q+r++
       KKY18949.1 1009 FdpnEVKVIHLRATGGEVGASSALAPKIGPLGLSPKKVGEDIAKATGDWKGLRVTVKLTI-QNRQA 1073
                       555599******************************************************.***96 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.1     3e-09   2.6e-06       2      62 ..     173     233 ..     172     239 .. 0.92
   2 !   14.1   0.1   5.8e-05     0.049       5      53 ..     285     333 ..     283     341 .. 0.90
   3 !   13.8   0.0   7.5e-05     0.064       8      58 ..     485     538 ..     483     546 .. 0.85
   4 !   15.0   0.0   3.2e-05     0.027       5      46 ..     517     558 ..     513     563 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 3e-09
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddarya 62 
                 ++e +y+ Al+l +qa++ +p+   a  lL e+++ +g+ ++A+a+L +   + p+++ ++
  KKY18949.1 173 IDERNYEKALDLIQQAISINPEVYSAHSLLSEIYFDQGDEEKAIAALLTGAHALPKEPSVW 233
                 799*****************************************************96655 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 5.8e-05
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpe 53 
                 g+   Al+ l+++l e p+n+ ++ ++Ae++  ++ ++ A++l ++  +
  KKY18949.1 285 GNRGKALKDLQKLLVELPNNPSVLRQMAEVYTDMKLPQRARELYERSIA 333
                 56678*************************************9988665 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 7.5e-05
      TPR_19   8 aeAlalleqalqedpk.naearllLAeallalgqldeAealLdalpeedpd..d 58 
                  +Al++++ + + ++  + e  l+ A++ ++  ++deA  l +++ e d+   d
  KKY18949.1 485 KDALRFYQPLVEIKAYrDVEFCLAAANCFVQCENFDEAVGLFEQVKETDQAnvD 538
                 6899999998888766799******************************98333 PP

  == domain 4  score: 15.0 bits;  conditional E-value: 3.2e-05
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAea 46 
                 ++++eA+ l+eq+ + d  n +arl L +++   g +++A++
  KKY18949.1 517 ENFDEAVGLFEQVKETDQANVDARLSLSRIYNRKGLVAKAKE 558
                 589*************************************97 PP

>> Ribosomal_L11  Ribosomal protein L11, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.1   1.9e-16   1.7e-13       2      70 .]    1078    1147 ..    1077    1147 .. 0.90

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 1.9e-16
                     --SHHHHHHHHHTXSSXXSSTTTSXX..EEEEHHHHHHHHHHHGGGHT.XS.SHHHHHHHHHHHHCTTTEEE CS
  Ribosomal_L11    2 tPptsylLkkaagiekgsgkpgketv..GtvslkqvyeIAkiKksdln.aalsleaavksilgtArsmGikV 70  
                     +P++s+l++ka++++++++k++k++    +v l++++eIA++++  ++ a+ +l+++v +ilgtA s+G++V
     KKY18949.1 1078 VPSASSLVIKALKEPPRDRKKQKNIKhtNSVPLDEIIEIARTMR-FKSlAK-DLKGTVLEILGTAFSVGCQV 1147
                     7********************998445589**************.555266.******************98 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00011     0.097      12      33 ..     173     194 ..     170     195 .. 0.89
   2 !    9.3   0.0    0.0015       1.3       3      24 ..     198     219 ..     196     227 .. 0.91
   3 ?   -1.5   0.1       4.3   3.7e+03      19      33 ..     255     269 ..     249     270 .. 0.77
   4 !    9.7   0.0    0.0012      0.99       5      34 .]     275     304 ..     272     304 .. 0.93
   5 ?    6.7   0.0      0.01       8.7       3      30 ..     307     334 ..     305     336 .. 0.90
   6 ?   -0.9   0.0       2.7   2.3e+03      15      24 ..     441     450 ..     438     450 .. 0.86
   7 ?    5.8   0.0     0.021        18       2      29 ..     504     531 ..     503     536 .. 0.85
   8 ?    0.3   0.0       1.2     1e+03       3      21 ..     546     564 ..     544     566 .. 0.81
   9 ?    2.8   0.3      0.18   1.6e+02       4      33 ..     956     985 ..     953     986 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
       TPR_2  12 yklgdyeeAleafekAleldPn 33 
                 +   +ye+Al++ ++A++++P+
  KKY18949.1 173 IDERNYEKALDLIQQAISINPE 194
                 6779*****************6 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0015
       TPR_2   3 alynlGlayyklgdyeeAleaf 24 
                 a+  l ++y+ +gd e+A++a+
  KKY18949.1 198 AHSLLSEIYFDQGDEEKAIAAL 219
                 8999***************997 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 4.3
       TPR_2  19 eAleafekAleldPn 33 
                  A  ++ + l+++ +
  KKY18949.1 255 SASYCYARLLQINQK 269
                 577899999999976 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.0012
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPnn 34 
                 ++++ + + lg+  +Al++++k l   Pnn
  KKY18949.1 275 FQRAAISRLLGNRGKALKDLQKLLVELPNN 304
                 78999*******************999997 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.01
       TPR_2   3 alynlGlayyklgdyeeAleafekAlel 30 
                 +l +++++y  ++ +++A+e++e+++++
  KKY18949.1 307 VLRQMAEVYTDMKLPQRARELYERSIAY 334
                 68899*******************9975 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 2.7
       TPR_2  15 gdyeeAleaf 24 
                  +++eAl++f
  KKY18949.1 441 ENFAEALRHF 450
                 799****998 PP

  == domain 7  score: 5.8 bits;  conditional E-value: 0.021
       TPR_2   2 ealynlGlayyklgdyeeAleafekAle 29 
                 e + + +++  +  +++eA+ +fe++ e
  KKY18949.1 504 EFCLAAANCFVQCENFDEAVGLFEQVKE 531
                 5677889*****************9866 PP

  == domain 8  score: 0.3 bits;  conditional E-value: 1.2
       TPR_2   3 alynlGlayyklgdyeeAl 21 
                 ++++ Gl++ ++ + +eA+
  KKY18949.1 546 IYNRKGLVAKAKENAQEAI 564
                 7888999999999999987 PP

  == domain 9  score: 2.8 bits;  conditional E-value: 0.18
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPn 33 
                 l   G+++y+ + +  Al++f +A +l+ +
  KKY18949.1 956 LVLYGQILYAGNSFPNALNYFFRAYALNKD 985
                 6788*****************999999986 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.013        11       6      28 ..     169     189 ..     166     197 .. 0.80
   2 ?    4.0   0.0     0.069        59       1      21 [.     198     218 ..     198     231 .. 0.85
   3 ?   -0.7   0.0       2.2   1.9e+03      10      33 ..     282     306 ..     276     309 .. 0.81
   4 !    8.8   0.1    0.0021       1.8       2      35 ..     308     341 ..     307     342 .. 0.88
   5 ?   -1.6   0.1       4.4   3.8e+03       6      23 ..     475     492 ..     470     492 .. 0.82
   6 !   12.1   0.0   0.00018      0.16       2      29 ..     506     531 ..     506     540 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.013
       TPR_7   6 arlysrlGdyeeAielyeqsLal 28 
                  +++ ++++ye+A++l +q  a+
  KKY18949.1 169 TDAFIDERNYEKALDLIQQ--AI 189
                 678999*************..54 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.069
       TPR_7   1 aLlnLarlysrlGdyeeAiel 21 
                 a++ L ++y+++Gd e+Ai  
  KKY18949.1 198 AHSLLSEIYFDQGDEEKAIAA 218
                 5678999***********975 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.2
       TPR_7  10 srlGdyeeAielyeqsL.altkdpe 33 
                 + lG++ +A++ ++++L +l + p+
  KKY18949.1 282 RLLGNRGKALKDLQKLLvELPNNPS 306
                 569************9988887776 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.0021
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdpeda 35 
                 L ++a++y ++   ++A elye+s+a + + +d+
  KKY18949.1 308 LRQMAEVYTDMKLPQRARELYERSIAYHQSVDDR 341
                 6689*******************99998888776 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 4.4
       TPR_7   6 arlysrlGdyeeAielye 23 
                 a++ +++  +++A+++y+
  KKY18949.1 475 AETLQSVALFKDALRFYQ 492
                 778888889999999996 PP

  == domain 6  score: 12.1 bits;  conditional E-value: 0.00018
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLalt 29 
                 +l+ a++++++ +++eA++l+eq  + +
  KKY18949.1 506 CLAAANCFVQCENFDEAVGLFEQ--VKE 531
                 6889*******************..444 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   5.5e-05     0.047      13      33 ..     174     194 ..     170     195 .. 0.88
   2 ?    3.7   0.0     0.069        59      10      23 ..     205     218 ..     198     221 .. 0.91
   3 ?    3.7   0.0     0.071        61       5      34 .]     275     304 ..     272     304 .. 0.83
   4 ?    6.1   0.0     0.012        10       4      29 ..     308     333 ..     305     337 .. 0.88
   5 ?    4.6   0.1     0.036        30       8      31 ..     510     533 ..     507     536 .. 0.89
   6 ?    1.6   0.1      0.31   2.7e+02       2      21 ..     545     564 ..     544     565 .. 0.89
   7 ?    2.6   0.1      0.16   1.3e+02       8      33 ..     960     985 ..     960     986 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.5e-05
                 HTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  13 klgkydeAleyyekALelnPn 33 
                    +y++Al+  ++A+++nP+
  KKY18949.1 174 DERNYEKALDLIQQAISINPE 194
                 6689****************6 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.069
                 HHHHTT-HHHHHHH CS
       TPR_1  10 ayfklgkydeAley 23 
                 +yf +g+ ++A+++
  KKY18949.1 205 IYFDQGDEEKAIAA 218
                 8***********97 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.071
                 HHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALelnPnn 34 
                 ++++++ + lg+  +Al++ +k L   Pnn
  KKY18949.1 275 FQRAAISRLLGNRGKALKDLQKLLVELPNN 304
                 678999999************988777765 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.012
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALe 29 
                 l +++ +y  ++ ++ A e ye+ + 
  KKY18949.1 308 LRQMAEVYTDMKLPQRARELYERSIA 333
                 66899******************986 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.036
                 HHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   8 GnayfklgkydeAleyyekALeln 31 
                 +n++ + +++deA+  +e++ e +
  KKY18949.1 510 ANCFVQCENFDEAVGLFEQVKETD 533
                 79***************9987766 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.31
                 HHHHHHHHHHHHTT-HHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAl 21 
                 ++++++G++   +++ +eA+
  KKY18949.1 545 RIYNRKGLVAKAKENAQEAI 564
                 689*******9999999998 PP

  == domain 7  score: 2.6 bits;  conditional E-value: 0.16
                 HHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   8 GnayfklgkydeAleyyekALelnPn 33 
                 G++++  + +  Al y+ +A  ln +
  KKY18949.1 960 GQILYAGNSFPNALNYFFRAYALNKD 985
                 7888888999**********999976 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.2   0.00069      0.59      24      68 ..     176     219 ..     163     221 .. 0.86
   2 !   11.2   0.0    0.0004      0.34       5      40 ..     307     340 ..     304     345 .. 0.84
   3 ?    2.0   0.0      0.31   2.6e+02      17      69 ..     441     492 ..     429     498 .. 0.75
   4 !   11.9   0.0   0.00025      0.21       9      67 ..     509     566 ..     505     569 .. 0.89
   5 ?    0.9   0.0      0.66   5.6e+02      46      75 ..     954     983 ..     950     985 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00069
      TPR_12  24 ellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlell 68 
                 +++ekal++++++    +p++ ++   L+++y+ +g+ e+A+++l
  KKY18949.1 176 RNYEKALDLIQQAISI-NPEVYSAHSLLSEIYFDQGDEEKAIAAL 219
                 6788888888888777.6889999999************999876 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.0004
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpd 40 
                 +l+++a+v++ ++  + A+el+e++++ ++++  +d
  KKY18949.1 307 VLRQMAEVYTDMKLPQRARELYERSIAYHQSV--DD 340
                 57789999999999999999999999999988..54 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.31
      TPR_12  17 grydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelle 69 
                 ++++eAl+++    e+ ++  G + ++++  +r  +++++    +++Al++++
  KKY18949.1 441 ENFAEALRHFMWL-EAETQNDGANVEDYVDLYREVAETLQSVALFKDALRFYQ 492
                 5667777777655.555666788888888888888888888888888888886 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 0.00025
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlel 67 
                  a++  + +++deA  l+e++ e  ++   + ++ ++++++  g +  a ++ +eA+ +
  KKY18949.1 509 AANCFVQCENFDEAVGLFEQVKETDQANV-DARLSLSRIYNRKGLVAKAKENAQEAIFI 566
                 5899999******************8775.6689**********************865 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.66
      TPR_12  46 ttlrnLgrlyralgryeeAlelleealaia 75 
                 + l  +g++++a + +  Al+++ +a+a+ 
  KKY18949.1 954 ALLVLYGQILYAGNSFPNALNYFFRAYALN 983
                 67888999999999999****999999986 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.2   3.4e-09   2.9e-06       5      68 .]     170     230 ..     167     230 .. 0.90
   2 ?    0.7   0.1         1   8.8e+02       7      27 ..     315     335 ..     309     339 .. 0.79
   3 !    9.2   0.1    0.0023       1.9       3      53 ..     509     556 ..     507     564 .. 0.89
   4 ?    3.9   0.1     0.099        84      39      61 ..     958     981 ..     954     990 .. 0.65

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 3.4e-09
      TPR_16   5 raalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapdap 68 
                 +a+++ ++y++A+ + ++a+  +   P+ + A+ ll ++++ qg+ ++A+a+++  + a p++p
  KKY18949.1 170 DAFIDERNYEKALDLIQQAISIN---PEVYSAHSLLSEIYFDQGDEEKAIAALLTGAHALPKEP 230
                 578999*****************...************************66666558888776 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 1
      TPR_16   7 alragdyddAaaaleaalkrd 27 
                 + + + +++A++++e+ ++++
  KKY18949.1 315 YTDMKLPQRARELYERSIAYH 335
                 556667899*****9999987 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0023
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeA 53 
                 +a+ +++  ++d+A+ ++e++ + d    ++++A+l l +++ r+g +a+A
  KKY18949.1 509 AANCFVQCENFDEAVGLFEQVKETD---QANVDARLSLSRIYNRKGLVAKA 556
                 5555666689***************...********************998 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.099
      TPR_16  39 llgdaalrqgrlaeAa.alyraal 61 
                 l+g+++++ + ++ A+  ++ra++
  KKY18949.1 958 LYGQILYAGNSFPNALnYFFRAYA 981
                 677777777777777777777764 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1    0.0026       2.2       9      33 ..     170     194 ..     163     195 .. 0.86
   2 !   10.8   0.1   0.00056      0.48       3      24 ..     198     219 ..     196     222 .. 0.88
   3 ?   -0.6   0.0       2.4     2e+03       5      27 ..     275     297 ..     272     298 .. 0.72
   4 ?    2.2   0.0      0.31   2.6e+02       7      28 ..     311     332 ..     308     334 .. 0.91
   5 ?    2.1   0.0      0.34   2.9e+02       2      33 ..     504     535 ..     503     536 .. 0.86
   6 ?    5.3   0.0     0.032        27       4      28 ..     540     564 ..     537     566 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0026
                 HHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   9 siylklgdyeeAkeyyekaleldpd 33 
                 ++ ++  +ye+A   +++a++++p+
  KKY18949.1 170 DAFIDERNYEKALDLIQQAISINPE 194
                 7889999****************96 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00056
                 HHHHHHHHHHHTT-HHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyy 24 
                 a+ +l+ iy+++gd e+A++++
  KKY18949.1 198 AHSLLSEIYFDQGDEEKAIAAL 219
                 667899**************98 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 2.4
                 HHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyeka 27 
                 ++ + i + lg+  +A + ++k 
  KKY18949.1 275 FQRAAISRLLGNRGKALKDLQKL 297
                 56666777788888888888876 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.31
                 HHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekal 28 
                 ++ +y +++  + A e ye+ +
  KKY18949.1 311 MAEVYTDMKLPQRARELYERSI 332
                 7899***************987 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.34
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 e ++  +++  + ++++eA+  +e++ e d++
  KKY18949.1 504 EFCLAAANCFVQCENFDEAVGLFEQVKETDQA 535
                 6789999*************999999887765 PP

  == domain 6  score: 5.3 bits;  conditional E-value: 0.032
                 HHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekal 28 
                  + l++iy  +g   +Ake  ++a+
  KKY18949.1 540 RLSLSRIYNRKGLVAKAKENAQEAI 564
                 5667777777777777777777765 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0053       4.5       9      42 ..     170     203 ..     163     205 .. 0.85
   2 !    9.2   0.0    0.0028       2.4       3      43 ..     198     238 ..     197     239 .. 0.90
   3 !    7.9   0.0    0.0073       6.2       5      43 ..     275     313 ..     272     314 .. 0.91
   4 !    8.1   0.1    0.0062       5.3       3      29 ..     307     333 ..     305     343 .. 0.85
   5 ?   -0.7   0.0       4.2   3.6e+03       2      28 ..     426     454 ..     425     470 .. 0.74
   6 ?   -1.8   0.0       9.8   8.4e+03       8      29 ..     468     489 ..     465     496 .. 0.63
   7 !    8.2   0.0    0.0059         5       5      43 ..     507     545 ..     503     563 .. 0.91
   8 ?   -1.0   0.5       5.4   4.6e+03      12      29 ..     583     600 ..     580     604 .. 0.85
   9 ?    1.7   0.0       0.7     6e+02       3      35 ..     955     987 ..     953     992 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0053
      TPR_14   9 eallalGdpdeAiallrralalaPddaeawllla 42 
                 +a+   +++++A++l ++a++ +P+   a+ ll 
  KKY18949.1 170 DAFIDERNYEKALDLIQQAISINPEVYSAHSLLS 203
                 6788899*****************9999887776 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0028
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 a+ +l e+++ +Gd ++Aia+l     + P+++ +w + a+
  KKY18949.1 198 AHSLLSEIYFDQGDEEKAIAALLTGAHALPKEPSVWHQIAD 238
                 5678999******************9999*******98775 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0073
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                  ++a++ + lG+  +A++ l+++l   P+++ +++++a+
  KKY18949.1 275 FQRAAISRLLGNRGKALKDLQKLLVELPNNPSVLRQMAE 313
                 6788888999***************************97 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.0062
      TPR_14   3 allalaeallalGdpdeAiallrrala 29 
                 +l+++ae++     p++A++l++r +a
  KKY18949.1 307 VLRQMAEVYTDMKLPQRARELYERSIA 333
                 6899********************998 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 4.2
      TPR_14   2 eallalaeallalG..dpdeAiallrral 28 
                 e++ +l+ + l lG  +++eA++++ ++ 
  KKY18949.1 426 ELRVKLGIFRLKLGteNFAEALRHFMWLE 454
                 56777888888777558*****9986664 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 9.8
      TPR_14   8 aeallalGdpdeAiallrrala 29 
                 ++++++  ++ +++al+++al+
  KKY18949.1 468 VDLYREVAETLQSVALFKDALR 489
                 5555666666666777777765 PP

  == domain 7  score: 8.2 bits;  conditional E-value: 0.0059
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 la+a  + + +++deA+ l++++ +++ ++ +a+l l +
  KKY18949.1 507 LAAANCFVQCENFDEAVGLFEQVKETDQANVDARLSLSR 545
                 67778899***************9999999999998876 PP

  == domain 8  score: -1.0 bits;  conditional E-value: 5.4
      TPR_14  12 lalGdpdeAiallrrala 29 
                 +++++ ++A++ l++a +
  KKY18949.1 583 EQREQRERAERELKAAHK 600
                 6788999********987 PP

  == domain 9  score: 1.7 bits;  conditional E-value: 0.7
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdda 35 
                 +l +++++l+a   +  A++++ ra al+ d++
  KKY18949.1 955 LLVLYGQILYAGNSFPNALNYFFRAYALNKDSP 987
                 67799**********************999987 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2     3e-05     0.026       2      42 .]     170     210 ..     170     210 .. 0.94
   2 ?    6.0   0.0     0.011       9.3       3      20 ..     205     222 ..     204     241 .. 0.77
   3 ?    0.6   0.1      0.55   4.7e+02      10      36 ..     253     279 ..     248     285 .. 0.84
   4 ?    2.7   0.0      0.12     1e+02       8      38 ..     285     315 ..     280     318 .. 0.87
   5 ?    4.1   0.0     0.044        38       3      42 .]     512     551 ..     510     551 .. 0.88
   6 ?    4.4   0.1     0.036        30       1      28 [.     960     987 ..     960     990 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3e-05
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 da+ +  +ye+A+   ++A+ ++P+  +a++ L ++y+ qG
  KKY18949.1 170 DAFIDERNYEKALDLIQQAISINPEVYSAHSLLSEIYFDQG 210
                 67778889*******************************99 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.011
      TPR_11   3 ayyeqGkyeeAieaYkkA 20 
                 +y++qG+ e+Ai+a+ + 
  KKY18949.1 205 IYFDQGDEEKAIAALLTG 222
                 8************99775 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.55
      TPR_11  10 yeeAieaYkkAlkldPdnaeayynLGl 36 
                 +  A  +Y + l++++++ +  + +++
  KKY18949.1 253 LHSASYCYARLLQINQKDQDSRFQRAA 279
                 567999***********9998888775 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.12
      TPR_11   8 GkyeeAieaYkkAlkldPdnaeayynLGlay 38 
                 G+  +A+++++k l   P+n++++  ++++y
  KKY18949.1 285 GNRGKALKDLQKLLVELPNNPSVLRQMAEVY 315
                 666789**********************999 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.044
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                  +++  +++eA+  +++  + d+ n++a + L  +y ++G
  KKY18949.1 512 CFVQCENFDEAVGLFEQVKETDQANVDARLSLSRIYNRKG 551
                 589999***********************99977776665 PP

  == domain 6  score: 4.4 bits;  conditional E-value: 0.036
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdna 28 
                 G+++y+ + +++A++ + +A +l+ d++
  KKY18949.1 960 GQILYAGNSFPNALNYFFRAYALNKDSP 987
                 99***********************998 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00095      0.81       3      66 ..     176     240 ..     171     246 .. 0.58
   2 !   12.6   0.3   0.00014      0.12       2      81 ..     250     330 ..     249     331 .. 0.95
   3 ?    5.1   0.2     0.031        26      30      81 ..     475     528 ..     444     545 .. 0.77
   4 ?   -1.0   0.0       2.5   2.2e+03      26      55 ..     956     986 ..     945     995 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00095
                 T-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHH CS
      ANAPC3   3 nnyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcl 66 
                 +ny++A+ l+  + + ++e +++  ll++ ++ +g+ ++A+  l +     +k + ++  +A ++
  KKY18949.1 176 RNYEKALDLIQQAISINPEVYSAHSLLSEIYFDQGDEEKAIAALLTGaHALPKEPSVWHQIADVC 240
                 45666666666666555555555555566666666666666665555555555555555555555 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00014
                 TT-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3   2 qnnyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 q+++++A  ++ rll+ ++++ ++++  A    l+g+  +A++ l+k+  + ++++ ++  +A+++ ++k  + A+ ++e+
  KKY18949.1 250 QQALHSASYCYARLLQINQKDQDSRFQRAAISRLLGNRGKALKDLQKLlVELPNNPSVLRQMAEVYTDMKLPQRARELYER 330
                 77899********************************************************************99998875 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.031
                 HHHHHHTT-HHHHHHHHHCT.SHHHC-H.HHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  30 AlclylngqykrAyellrka.klnsksl.gcrylfAqcllkLkkyeeAiaaLek 81 
                 A++l +   +k A+++++++ +++     + ++ +A c ++ ++++eA+ ++e 
  KKY18949.1 475 AETLQSVALFKDALRFYQPLvEIKAYRDvEFCLAAANCFVQCENFDEAVGLFEQ 528
                 666666777777888888777555543337777778888899999999988875 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 2.5
                 HHHHHHHHHHTT-HHHHHHHHHCT.SHHHC- CS
      ANAPC3  26 ayllAlclylngqykrAyellrka.klnsks 55 
                 + l+++ ly  + +  A++++ +a  ln+ s
  KKY18949.1 956 LVLYGQILYAGNSFPNALNYFFRAyALNKDS 986
                 5678999999999999988887776666665 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.031        26       6      54 ..     173     221 ..     170     235 .. 0.88
   2 !   15.7   0.3   1.5e-05     0.013       8      67 ..     250     309 ..     248     315 .. 0.88
   3 ?   -0.2   0.0       1.3   1.1e+03      26      41 ..     321     336 ..     318     339 .. 0.91
   4 ?   -0.6   0.0       1.7   1.5e+03       9      36 ..     967     994 ..     961     999 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.031
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLea 54 
                 i e+++e+al  ++  + ++P+  + +     +++ +G+ ++A+a+L +
  KKY18949.1 173 IDERNYEKALDLIQQAISINPEVYSAHSLLSEIYFDQGDEEKAIAALLT 221
                 7899***************************************999966 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.5e-05
       TPR_9   8 eedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaea 67 
                 ++    a  ++ rll+++ +d + r+ R+ +   lG+  +Al+dL+  l   p++p + +
  KKY18949.1 250 QQALHSASYCYARLLQINQKDQDSRFQRAAISRLLGNRGKALKDLQKLLVELPNNPSVLR 309
                 566677888***************************************999998877654 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.3
       TPR_9  26 PddpeerrdRGlllaq 41 
                 P++++e+++R ++++q
  KKY18949.1 321 PQRARELYERSIAYHQ 336
                 999***********99 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.7
       TPR_9   9 edweralavverllllaPddpeerrdRG 36 
                 + ++ al +  r  +l+ d+p  + d G
  KKY18949.1 967 NSFPNALNYFFRAYALNKDSPLQWKDTG 994
                 67889999999***************98 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0056       4.7       2      33 ..     185     216 ..     184     217 .. 0.94
   2 ?    6.7   0.1     0.012        11       1      33 [.     259     291 ..     259     292 .. 0.91
   3 ?    5.5   0.0      0.03        26       3      34 .]     295     326 ..     293     326 .. 0.87
   4 ?   -0.1   0.0       1.9   1.6e+03       7      33 ..     531     557 ..     525     564 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0056
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                  ++a+ ++P    a+ +L e++  +Gd ++A+
  KKY18949.1 185 IQQAISINPEVYSAHSLLSEIYFDQGDEEKAI 216
                 699**************************998 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.012
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 +y + l+++ ++ d+ +++A + + +G+ ++A+
  KKY18949.1 259 CYARLLQINQKDQDSRFQRAAISRLLGNRGKAL 291
                 899********************9999877775 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.03
      TPR_17   3 lkaleldPnnadaynnLAelllknGdlmtArq 34 
                 +k l   Pnn+ ++ ++Ae++   + +++Ar+
  KKY18949.1 295 QKLLVELPNNPSVLRQMAEVYTDMKLPQRARE 326
                 5666667***************9999999986 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 1.9
      TPR_17   7 eldPnnadaynnLAelllknGdlmtAr 33 
                 e d  n+da   L +++ ++G  ++A+
  KKY18949.1 531 ETDQANVDARLSLSRIYNRKGLVAKAK 557
                 556778999999999998777666555 PP

>> NatB_MDM20  N-acetyltransferase B complex (NatB) non catalytic subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.2   1.9e+03      71     103 ..     325     358 ..     306     391 .. 0.73
   2 !   13.7   0.1   2.7e-05     0.023     164     248 ..     481     558 ..     462     562 .. 0.89
   3 ?    0.1   0.0      0.36   3.1e+02     294     321 ..     650     677 ..     648     681 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.2
  NatB_MDM20  71 sglvelileYfekfgsKlc.cfeDLkkYleeLsk 103
                  +l e  ++Y ++  ++ +  f+D++ Y+e+  +
  KKY18949.1 325 RELYERSIAYHQSVDDRESfTFSDINVYVELFAF 358
                 3378888999999998866269******998644 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.7e-05
  NatB_MDM20 164 laiYraslrlgaelletesqpsddlallaahalldlseksvdstlliqaillLeflltksphNfqlkLlLvrlYlllGagslalk 248
                 +a ++++lr+ + l e+  +   +++l aa+  ++  +       + +a++l e++ + ++ N+ ++L L r+Y + G++ +a +
  KKY18949.1 481 VALFKDALRFYQPLVEIKAYRDVEFCLAAANCFVQCEN-------FDEAVGLFEQVKETDQANVDARLSLSRIYNRKGLVAKAKE 558
                 56788888888888889999999999999999999998.......99*******************************9999876 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.36
  NatB_MDM20 294 aeketpesiakayekgsYskieefiefq 321
                 a++et+e +++a+   +Ys + ef++  
  KKY18949.1 650 ADRETTEELKNAFIASKYSALLEFQDAA 677
                 689*********************9875 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.34   2.9e+02      10      31 ..     172     193 ..     162     194 .. 0.79
   2 ?    3.5   0.0      0.15   1.3e+02       6      23 ..     202     219 ..     198     220 .. 0.89
   3 ?    4.1   0.0     0.099        84       2      32 ..     273     303 ..     272     304 .. 0.81
   4 ?    3.6   0.1      0.15   1.3e+02       5      27 ..     310     332 ..     307     335 .. 0.87
   5 ?    1.9   0.0      0.51   4.3e+02       7      28 ..     510     531 ..     507     533 .. 0.84
   6 ?   -1.1   0.1       4.5   3.8e+03       1      26 [.     538     563 ..     538     564 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.34
                 HHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6  10 yrklgdtdkAlealerlikeYP 31 
                 ++   +++kAl++ ++ i+  P
  KKY18949.1 172 FIDERNYEKALDLIQQAISINP 193
                 555469************9888 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAleal 23 
                 l + y+ +gd +kA++al
  KKY18949.1 202 LSEIYFDQGDEEKAIAAL 219
                 6789***********997 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.099
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYPd 32 
                 + +++a   r lg+  kAl+ l++l+ e P+
  KKY18949.1 273 SRFQRAAISRLLGNRGKALKDLQKLLVELPN 303
                 5677776667778*************99998 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerli 27 
                 ++a+ y  ++ +++A+e++er i
  KKY18949.1 310 QMAEVYTDMKLPQRARELYERSI 332
                 7999****99**********955 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.51
                 HHHHHH.HHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrk.lgdtdkAlealerlik 28 
                 a ++ +   + d+A+ ++e++ +
  KKY18949.1 510 ANCFVQcE-NFDEAVGLFEQVKE 531
                 77888888.9**********976 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 4.5
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerl 26 
                 dA + l + y + g  +kA+e  ++ 
  KKY18949.1 538 DARLSLSRIYNRKGLVAKAKENAQEA 563
                 68888999999988999999988876 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2    0.0011      0.96       6      47 ..     180     221 ..     175     225 .. 0.91
   2 ?    1.9   0.1      0.35     3e+02      15      49 ..     264     298 ..     260     306 .. 0.88
   3 ?    3.8   0.1     0.083        71      13      44 ..     528     559 ..     520     570 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0011
      TPR_20   6 pelaeleaalaanpddldarldlAlallaagryeeAleqLle 47 
                 + l+ +++a+  np+ + a+  l++ ++ +g++e+A+++Ll+
  KKY18949.1 180 KALDLIQQAISINPEVYSAHSLLSEIYFDQGDEEKAIAALLT 221
                 5677899*********************************96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.35
      TPR_20  15 laanpddldarldlAlallaagryeeAleqLleil 49 
                 l+ n +d d r++ A      g++ +Al+ L ++l
  KKY18949.1 264 LQINQKDQDSRFQRAAISRLLGNRGKALKDLQKLL 298
                 566899**********************9998876 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.083
      TPR_20  13 aalaanpddldarldlAlallaagryeeAleq 44 
                 +  +++ +++darl l++ ++ +g +++A e+
  KKY18949.1 528 QVKETDQANVDARLSLSRIYNRKGLVAKAKEN 559
                 55578999****************99999776 PP

>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   8.3e-05     0.071     240     292 ..     168     220 ..     152     293 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.3e-05
                 HHHHHHHSS--HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHH CS
       ChAPs 240 qaefllskkkeelAlevakravksaPsefktWalLvkvYikledienALltLN 292
                  ++  ++++++e Al++ ++a+++ P  ++   lL+++Y +++d e+A+ +L 
  KKY18949.1 168 ATDAFIDERNYEKALDLIQQAISINPEVYSAHSLLSEIYFDQGDEEKAIAALL 220
                 35667899999************************************998874 PP

>> NEXCaM_BD  Regulatory region of Na+/H+ exchanger NHE binds to calmodulin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.9   0.00019      0.16      48      89 ..     546     586 ..     539     600 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00019
   NEXCaM_BD  48 sYnrhtLvadtsekqakeilirrqkslreslrkgsslsrerk 89 
                  Ynr  Lva+++e++++ i+i r++ lr + rk +  + +r+
  KKY18949.1 546 IYNRKGLVAKAKENAQEAIFIGRENLLRPERRKYERKE-QRE 586
                 5*******************************944444.332 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.96   8.2e+02       8      25 ..     170     187 ..     166     192 .. 0.82
   2 ?    7.6   0.0    0.0059         5       8      28 ..     511     531 ..     508     532 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.96
         PPR   8 sgycknGkleeAlelfke 25 
                 +++  ++++e+Al+l+++
  KKY18949.1 170 DAFIDERNYEKALDLIQQ 187
                 6788899********976 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0059
         PPR   8 sgycknGkleeAlelfkeMke 28 
                 ++++++ +++eA+ lf++ ke
  KKY18949.1 511 NCFVQCENFDEAVGLFEQVKE 531
                 79***************9876 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.42   3.6e+02      16      31 ..     176     191 ..     172     198 .. 0.85
   2 ?   -1.3   0.0       2.7   2.3e+03       8      23 ..     202     217 ..     200     220 .. 0.85
   3 ?   -2.4   0.0       5.6   4.8e+03      13      27 ..     282     296 ..     278     298 .. 0.77
   4 ?   11.6   0.1   0.00023      0.19       5      34 ..     308     337 ..     306     338 .. 0.89
   5 ?   -2.3   0.0       5.2   4.5e+03      20      33 ..     479     492 ..     470     495 .. 0.74
   6 ?    0.1   0.0      0.96   8.2e+02      16      28 ..     517     529 ..     514     535 .. 0.83
   7 ?   -2.0   0.1       4.2   3.6e+03       6      29 ..     541     564 ..     538     569 .. 0.87
   8 ?   -0.3   0.1       1.3   1.1e+03       4      11 ..     834     841 ..     833     844 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.42
      TPR_10  16 grydeAealleealai 31 
                 ++y++A++l ++a++i
  KKY18949.1 176 RNYEKALDLIQQAISI 191
                 5899999999999987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.7
      TPR_10   8 LanalrqrgrydeAea 23 
                 L+ +++++g+ ++A a
  KKY18949.1 202 LSEIYFDQGDEEKAIA 217
                 7889******999976 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 5.6
      TPR_10  13 rqrgrydeAeallee 27 
                 r +g++ +A+++l++
  KKY18949.1 282 RLLGNRGKALKDLQK 296
                 668999999999987 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 0.00023
      TPR_10   5 lnNLanalrqrgrydeAealleealairrr 34 
                 l  +a ++++++  ++A++l+e+++a ++ 
  KKY18949.1 308 LRQMAEVYTDMKLPQRARELYERSIAYHQS 337
                 567899********************9885 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 5.2
      TPR_10  20 eAealleealairr 33 
                 +++al+++al+ ++
  KKY18949.1 479 QSVALFKDALRFYQ 492
                 67889999998886 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.96
      TPR_10  16 grydeAealleea 28 
                  ++deA+ l+e++
  KKY18949.1 517 ENFDEAVGLFEQV 529
                 689********98 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 4.2
      TPR_10   6 nNLanalrqrgrydeAealleeal 29 
                   L++++ + g  ++A + ++ea+
  KKY18949.1 541 LSLSRIYNRKGLVAKAKENAQEAI 564
                 579999***9*9999999999997 PP

  == domain 8  score: -0.3 bits;  conditional E-value: 1.3
      TPR_10   4 slnNLana 11 
                 ++nNLa +
  KKY18949.1 834 TMNNLALR 841
                 8*****87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.52
# Mc/sec: 6722.19
//
Query:       KKY18950.1  [L=538]
Description: putative sam domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-08   32.7   0.2    1.8e-07   31.2   0.1    1.9  2  SAM_2     SAM domain (Sterile alpha motif)
     0.0012   19.3   0.2     0.0023   18.3   0.2    1.5  1  SAM_1     SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.71   6.4e+03      27      44 ..      79      96 ..      78     108 .. 0.84
   2 !   31.2   0.1     2e-11   1.8e-07       6      65 ..     473     529 ..     468     530 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.71
                HTTCSHHHHHTTSCHHHH CS
       SAM_2 27 dagitgaelllrlteedL 44
                ++ i+g + +++++++ +
  KKY18950.1 79 SHPISGVLSPANFEKDAM 96
                789999999999999987 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 2e-11
                 HHHHHHHHHHTTTGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTHHHHHHHHHHHHHHHHH CS
       SAM_2   6 ledvaeWLrsiglkqytdnFrdagitgaelllrlteedLkrlGitsvghrkkilkkiqel 65 
                 l+d+  WLrs++l++ytdn++d ++t    l +l+ + L++ G++++g r+k+lk ++++
  KKY18950.1 473 LQDIPAWLRSLRLHKYTDNLKDLKWTD---LIELDDKGLEDRGVNALGARNKLLKVFEQI 529
                 7899***********************...88***********************99886 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.2   2.6e-07    0.0023       6      59 ..     474     525 ..     472     530 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.6e-07
                 SSHHHHHHHTTSGGGHHHHHTTTSSHHHHTTSCHHHHHHCTTTSHHHHHHHHHH CS
       SAM_1   6 edVgeWLesiglgqYadlFrageidgdaLlllteddLeklgvtllGHrkkIlya 59 
                 +d+  WL+s++l++Y+d++++ +  +  L +l+++ Le+ gv+ lG r k+l+ 
  KKY18950.1 474 QDIPAWLRSLRLHKYTDNLKDLK--WTDLIELDDKGLEDRGVNALGARNKLLKV 525
                 57889**************7777..999***********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       870  (0.0485247); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3353.97
//
Query:       KKY18951.1  [L=477]
Description: putative dnase i-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-08   32.9   0.1      7e-08   32.3   0.1    1.3  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.1   3.9e-12     7e-08      32     233 .]      88     441 ..      46     441 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 3.9e-12
                    S.....................................EEEEEEEBSCTCHHHHHHHHH.......................TTCEEEEECCH... CS
                    x.....................................xxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxx... RF
  Exo_endo_phos  32 D.....................................vlgLQEvdddelsriplllal.......................ggflgasstsp... 64 
                    D                                      l+LQEv+  +++ +   + +                                 +   
     KKY18951.1  88 DneshnrasffdpereedpgrepepslravlrrqkwphFLLLQEVKIKPGDQMTMKAVQmaindplpstalhlqpgspshptD---------Tlpd 174
                    14444444444444444455555555555555555555999********9999888888999998888887776555544440.........1445 PP

                    .................ECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE............................ CS
                    .................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................ RF
  Exo_endo_phos  65 .................tgggggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlni............................ 115
                                       g gg+ +g+a+l+r  +       + + ++  +  ++  ++ + + + +                            
     KKY18951.1 175 ggprykvyfnlprdrynAKGFGGKVYGVATLIRQDFANQYIERVRNVDWDLEGRISVIETKPFPLPLCpsptapsdtispsrktlklsliniyavn 270
                    555666666666777888899***************888888888888888888888888888888889*************************** PP

                    ............CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH....................... CS
                    ............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................... RF
  Exo_endo_phos 116 ............ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapap....................... 176
                                ++    ++ ++l l   ll+  ++ + ++  vi+aGD+N +ps+ d +            p                       
     KKY18951.1 271 gtsnpyfspstgEPTGETRHTHKLSLHTHLLRECNALLSQSYEVILAGDLNIAPSAIDGHPNLRTW------Peqhvrnrkdfttkfllptsspls 360
                    **********************************************************99955444......344545589888888877777776 PP

                    ......H......................SSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECCHHEECTSSCSSSB CS
                    ......x......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 177 ......v......................glyllgggptptyvtraggsrlDrilaspalalfrsgvlppplalvrrealtlSDH 233
                          +                        y +gg  t  +  ++ + r+D  + s +l  +  g ++++ ++ r+    +SDH
     KKY18951.1 361 nhiqpnFntkitpfpgldtfrllhpltkqYSYHPGGRGTSKHSFESSCDRVDLMICSQGLGAWIKGAGICESVRDRG----RSDH 441
                    6666550556666677778888999999********************************99999999999998775....9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3097.69
//
Query:       KKY18952.1  [L=436]
Description: putative l-fucose permease glucose galactose transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-06   25.2  29.0    6.9e-06   25.2  29.0    2.3  3  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        3.6    7.6   5.5        1.1    9.2   0.1    3.0  4  TRIQK     Triple QxxK/R motif-containing protein family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2     0.065   5.8e+02     303     319 ..      34      50 ..      16      63 .. 0.65
   2 !   25.2  29.0   7.7e-10   6.9e-06      54     321 ..      50     322 ..      27     340 .. 0.73
   3 ?    1.6   1.0     0.012     1e+02     126     172 ..     336     381 ..     326     400 .. 0.54

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.065
       MFS_1 303 lllvlvliGfglgfvfp 319
                 + ++++l+Gf++g+v +
  KKY18952.1  34 VTILFFLWGFAYGLVDV 50 
                 22356667777776644 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 7.7e-10
       MFS_1  54 rlsdrfGrrrvlllglllfalglllllfa....sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgg..llas 146
                 +l + f +   + ++l+++a+g +ll+++    +s+  ++ + ++ G+g ++l +a+  ++a   p++     + l++a  ++G+ ++pll++  ++a+
  KKY18952.1  50 VLNNHFQAELNITASLAVLAVG-CLLFWPsgvkASFGGFCGSMFVVGAGLSTLETAADPFLAICGPPRYSEIRLNLAQAVQGVGSFVAPLLASrvFFAH 147
                 55555555556778999999**.55555435656666********************************************************655555 PP

       MFS_1 147 slg.......Wravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlw.illialllfffgfsglltllplylqev 237
                  +         ++v++ +a +  l+f+   l+++++ pe        +e+  +++ + p    l+k+  l+ +++  + ++++ ++++ +++ +   + 
  KKY18952.1 148 TVDtkeglknVQWVYLGVACFVGLLFI---LFFLAPFPEITDADMGLQEAEIEGQDVGP----LRKQYGLFlAAWSQFWYVGAQVALAAYFINF--CKE 237
                 5559***99999999999999999988...55555555555444444434455666666....4444444224566666665444446666666..999 PP

       MFS_1 238 lglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllll.vlvliGf.glgfvfpsl 321
                  g +   +++ lla+++ + a+ ++lag l+   + ++r+ll++ l +++++++a ++++ +a++++  +++++   +++++f++ 
  KKY18952.1 238 AGKT-PSQSSDLLAVGQGLYAFNRFLAGGLLMIRSIKPRILLMVYLSMAFVFSVAAMNTSGKASIAVGiIVFCFESaCFATIFTLG 322
                 9999.6888888***********999999998888999999999999999999999999955555555233335555777766654 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.012
       MFS_1 126 lsagfslGailgpllggllasslgWravfyilaivsllafvlfllll 172
                 + +++  G ++ p+  g+++++ + ++++ i    ++la+  f l++
  KKY18952.1 336 FLVSAISGGMVVPPMMGAVVTNRNAHVAMAIPMMGYILAL-AFPLYV 381
                 3344445556666666666655444444444444443332.234444 PP

>> TRIQK  Triple QxxK/R motif-containing protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.34   3.1e+03      55      65 ..      33      43 ..       8      48 .. 0.72
   2 ?    9.2   0.1   0.00012       1.1      44      72 ..     151     179 ..     145     185 .. 0.89
   3 ?   -2.6   0.0      0.61   5.4e+03       1      21 [.     189     209 ..     189     210 .. 0.90
   4 ?   -4.3   0.2         2   1.8e+04      56      67 ..     303     316 ..     299     319 .. 0.51

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.34
       TRIQK 55 lvailvlllal 65
                lv+il++l ++
  KKY18952.1 33 LVTILFFLWGF 43
                78888888764 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00012
       TRIQK  44 sasgikevllvlvailvlllalYalffln 72 
                 +  g+k+v++v +++ +++  l+ lffl 
  KKY18952.1 151 TKEGLKNVQWVYLGVACFVGLLFILFFLA 179
                 56799**********************95 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.61
       TRIQK   1 mgkkdasaaklpvdqYRKqiG 21 
                 mg ++a+  +  v   RKq G
  KKY18952.1 189 MGLQEAEIEGQDVGPLRKQYG 209
                 8899999999999999**987 PP

  == domain 4  score: -4.3 bits;  conditional E-value: 2
       TRIQK  56 vailvlll..alYa 67 
                 v+i+v+ +  a++a
  KKY18952.1 303 VGIIVFCFesACFA 316
                 56655554115555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2778.26
//
Query:       KKY18953.1  [L=861]
Description: hypothetical protein UCRPC4_g04675 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-20   71.9   0.1    4.5e-20   71.2   0.1    1.4  1  NCBP3     Nuclear cap-binding protein subunit 3


Domain annotation for each model (and alignments):
>> NCBP3  Nuclear cap-binding protein subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.1   2.5e-24   4.5e-20       1      58 [.     461     518 ..     461     519 .. 0.98

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 2.5e-24
       NCBP3   1 lrpealhirGvdnLstedikaYvdeylnyeepfriEWIdDtsvnvvFkseedaakALk 58 
                 ++p+++hirG+d+ +t++i ++++e+++  ep riEWIdDts+n+ ++++e a+kAL 
  KKY18953.1 461 IQPNKVHIRGLDEATTDQIRDFAKEHFTLAEPTRIEWIDDTSANILYSTKELATKALD 518
                 68*******************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (861 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.54
# Mc/sec: 4810.33
//
Query:       KKY18954.1  [L=193]
Description: putative esterase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1330.13
//
Query:       KKY18955.1  [L=844]
Description: putative non-specific serine threonine protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-13   51.3   0.0    6.1e-13   48.9   0.0    2.3  3  PAS_9     PAS domain
     0.0011   19.0   2.6     0.0024   17.8   0.0    2.7  3  PAS       PAS fold
  ------ inclusion threshold ------
      0.012   15.8   0.1       0.33   11.2   0.0    2.9  3  PAS_4     PAS fold
        5.6    5.7  12.6        1.5    7.5   9.2    1.7  2  DUF4551   Protein of unknown function (DUF4551)


Domain annotation for each model (and alignments):
>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   1.4e-16   6.1e-13       9     103 ..     270     364 ..     260     365 .. 0.95
   2 ?   -2.9   0.0       1.8     8e+03      19      59 ..     514     557 ..     513     577 .. 0.73
   3 ?   -2.7   0.0       1.6   7.1e+03      73      98 ..     601     624 ..     597     626 .. 0.79

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 1.4e-16
       PAS_9   9 pdgrilyaNeaalrllGyspeevlgksitdlf..vtdpeanerlraaleqgrkkerevevvlirkngetfwvlltaspvkdddgelvgiivilrDit 103
                 +d++i++a+e + r ++y+ + vlg++++ l+  +t++   +r+r al++gr  ++++   ++r++g++f +ll ++p+ d+ g+++ +i+ ++D++
  KKY18955.1 270 KDNPIVFASEEFHRTTQYGMDYVLGRNCRFLQgpDTNKLQVQRIRSALDAGR--QHQEVFLNYRRDGSPFVNLLMMAPLCDSRGKIRYFIGAQVDVS 364
                 6789************************************************..*****************************************98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.8
       PAS_9  19 aalrllGyspeevlgksitdlf...vtdpeanerlraaleqgrk 59 
                 +++ l+ + ++ v g  +++++    ++p+ +++l+aa+ +gr 
  KKY18955.1 514 SFRILFASPSQRVPGILQSNFLsriGGSPHVRSELEAAISEGRG 557
                 56667766677777777777778878888888899999988883 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.6
       PAS_9  73 getfwvlltaspvkdddgelvgiivi 98 
                 g++ w  ++++p+  ++g +  + v+
  KKY18955.1 601 GRPRW--IHCTPLLGAGGQIGVWMVV 624
                 67889..999***9999988776555 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   5.4e-07    0.0024       3     109 ..     251     359 ..     250     363 .. 0.89
   2 ?   -0.3   0.1      0.24   1.1e+03      85     113 .]     602     627 ..     596     627 .. 0.80
   3 ?   -2.6   0.6       1.2   5.5e+03      54      71 ..     713     732 ..     709     741 .. 0.47

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 5.4e-07
                 HHHHHHHSSSEEEEEE...TTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEECTTSSEEEEEEEEEEEEE CS
         PAS   3 lraileslpdpifvvD...edgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfklrdgrpihlevraspvrd 98 
                 lr+  e l++  +++D   +d  i+++++++ + +++  + vlg++   l  ++++  ++++++ +l +g++ + +  + ++ dg+p+  ++ ++p+ d
  KKY18955.1 251 LREASEGLAEVFCLTDpsrKDNPIVFASEEFHRTTQYGMDYVLGRNCRFLQGPDTNKLQVQRIRSALDAGRQHQEVFLNYRR-DGSPFVNLLMMAPLCD 348
                 56666778888888888778999*************************77777777799999*********99999999999.**************** PP

                 TTEEEEEEEEE CS
         PAS  99 aggeilgflgv 109
                   g+i++f+g 
  KKY18955.1 349 SRGKIRYFIGA 359
                 ********996 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.24
                 SEEEEEEEEEEEEETTEEEEEEEEEEEES CS
         PAS  85 rpihlevraspvrdaggeilgflgvlrdi 113
                 rp+++  +++p++ agg+i g+++v++ i
  KKY18955.1 602 RPRWI--HCTPLLGAGGQI-GVWMVVMVI 627
                 56665..4689*******9.999998765 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.2
                 HHH..HHHHHHHHHHHHTT- CS
         PAS  54 dda..elaelleqlleqgee 71 
                 d++  +++++ +q+ +q+++
  KKY18955.1 713 DHShhYTQQQQQQQQQQQQQ 732
                 44422233333333333333 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.21   9.6e+02      17      70 ..     176     229 ..     159     237 .. 0.80
   2 ?   11.2   0.0   7.4e-05      0.33      30     106 ..     287     364 ..     269     368 .. 0.77
   3 ?   -0.7   0.0      0.37   1.7e+03      75     105 ..     600     627 ..     582     632 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.21
       PAS_4  17 vlyaNaaaaelfgappeellGktlaellpee...daarleralrrvlegeepiefle 70 
                 + yaNa  ++   ++p e +G t + ++p+    +  r e+a ++++++e p++ ++
  KKY18955.1 176 IHYANAVTEA---LEPLEGYGFTQETVAPAKnsaLEKRAEEAFQALVDEELPAYIAH 229
                 6788887555...89999999999999999888888899999999998888877766 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 7.4e-05
       PAS_4  30 appeellGktlaellpee..daarleralrrvlegeepiefleelllpgeerhyelrllPlrdesGevigvlvisrDiT 106
                 +  + +lG+ ++ +l  +   + +++r+  ++ +g++++e    ++++g++ + +l + Pl+d++G+++ +++  +D++
  KKY18955.1 287 YGMDYVLGRNCR-FLQGPdtNKLQVQRIRSALDAGRQHQEVFLNYRRDGSPFVNLLMMAPLCDSRGKIRYFIGAQVDVS 364
                 555556666666.2222224677888999999999999999999999************************99999997 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.37
       PAS_4  75 pgeerhyelrllPlrdesGevigvlvisrDi 105
                  g++r+  ++++Pl+ + G+ igv +++  i
  KKY18955.1 600 VGRPRW--IHCTPLLGAGGQ-IGVWMVVMVI 627
                 455555..6899**998888.7776666555 PP

>> DUF4551  Protein of unknown function (DUF4551)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.24   1.1e+03     178     226 ..     382     424 ..     299     475 .. 0.61
   2 ?    7.5   9.2   0.00034       1.5     114     250 ..     657     814 ..     640     831 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.24
     DUF4551 178 eeekeelesekalkslrsasrplPesl.lsrapkppsspkeppssslskd 226
                 e++ ee++s  + +s +     +P  l l       +s+++p+s++++kd
  KKY18955.1 382 EQNDEETQS--EQESHQNGDQQNPLILnLNG-----NSSTHPESNPEEKD 424
                 222222222..22233333344443332222.....22233333332222 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00034
     DUF4551 114 kkselfkvspskasekksrressgaa....kkssslnessl..dakekeektvskksqlslslselrklseeekeelesekalkslrsasrplPesl.l 205
                 +++++++ +  ++    +r+  +g      +    +n ++   ++  ++++ + ++ + ++s+  +++ ++++++++++ ++++s++++s ++P ++  
  KKY18955.1 657 NGTRKPEWHRDMNVMDRNRHATNGHMngnvN---ATNPTTYlnHHDPNRSRPGPRSPTPDHSHHYTQQQQQQQQQQQQQYQPFSSASRTSSRHPPPPqP 752
                 4556666777777777777777777644222...22222222223334556667778888888777777777777888889999988888888877734 PP

     DUF4551 206 srapkpp....sspkeppssslskderdskseess.............qvelrlgsvlsrll 250
                  +++++     s ++  +  ++s+++r+ +++  +              +e+   s++sr+ 
  KKY18955.1 753 PTTSDKGigilSLSNPVEGFRPSPHHRSDHRTGGNvangngngnsngdTAEVDRSSLSSRSR 814
                 44443337777444444455555666655555444455555665555544444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1218  (0.0679346); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.93u 0.38s 00:00:01.31 Elapsed: 00:00:00.58
# Mc/sec: 4378.02
//
Query:       KKY18956.1  [L=823]
Description: putative ring finger protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-09   37.5   4.9    5.3e-09   36.2   4.9    1.7  1  zf-rbx1        RING-H2 zinc finger domain
      1e-08   35.3   2.6      1e-08   35.3   2.6    2.1  2  zf-RING_2      Ring finger domain
    1.1e-06   28.3   2.2    3.1e-06   27.0   2.2    1.7  1  zf-C3HC4       Zinc finger, C3HC4 type (RING finger)
    1.7e-06   27.9   0.4    3.9e-06   26.8   0.4    1.6  1  zf-RING_UBOX   RING-type zinc-finger
    1.5e-05   24.8   4.2    6.1e-05   22.8   1.7    2.3  2  zf-C3HC4_3     Zinc finger, C3HC4 type (RING finger)
    1.8e-05   24.5   3.6    1.8e-05   24.5   3.6    1.7  1  zf-C3HC4_2     Zinc finger, C3HC4 type (RING finger)
    3.8e-05   23.2   0.5    7.6e-05   22.3   0.5    1.4  1  Zn_ribbon_17   Zinc-ribbon, C4HC2 type
     0.0014   18.5   4.3      0.012   15.6   4.9    2.0  2  zf-RING_5      zinc-RING finger domain
     0.0036   17.1   0.8     0.0036   17.1   0.8    1.7  2  Prok-RING_4    Prokaryotic RING finger family 4
  ------ inclusion threshold ------
      0.016   15.2   2.8      0.096   12.7   0.8    2.2  2  zf-ANAPC11     Anaphase-promoting complex subunit 11 RING-H2 
      0.023   14.8   1.2      0.053   13.7   1.2    1.6  1  zf-C3HC4_4     zinc finger of C3HC4-type, RING
      0.079   12.7   1.7       0.25   11.1   0.1    2.2  2  zf-RING_11     RING-like zinc finger
       0.27   11.6   2.0       0.51   10.7   2.0    1.4  1  zf-RING-like   RING-like domain
        3.8    7.4   4.8       0.92    9.4   1.4    1.6  2  zf-RING_4      RING/Ubox like zinc-binding domain


Domain annotation for each model (and alignments):
>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   4.9   4.2e-12   5.3e-09       1      55 []     341     410 ..     341     410 .. 0.91

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 4.2e-12
     zf-rbx1   1 dtCaiCrneleeacieckapgdee...............cpvvlGeCgHaFHlhCiskWlktrkvCPlcr 55 
                 d C+iCr+e+++  ++ +++g++                + ++   CgH+ H+ C+++Wl+++++CP+cr
  KKY18956.1 341 DVCIICREEMTAWPPNDTNTGTAAgtearrrmqnsvaerMRPKKLPCGHVLHFSCLRSWLERQQNCPTCR 410
                 68*********999999999988889999*******999666666************************8 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2      0.69   8.9e+02       2      11 ..     342     351 ..     341     355 .. 0.83
   2 !   35.3   2.6   8.2e-12     1e-08      15      44 .]     381     410 ..     372     410 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.69
   zf-RING_2   2 eCpICleels 11 
                  C IC ee++
  KKY18956.1 342 VCIICREEMT 351
                 6****99986 PP

  == domain 2  score: 35.3 bits;  conditional E-value: 8.2e-12
   zf-RING_2  15 svlllpCgHvfhreClerwlrssstCPlCr 44 
                 ++ +lpCgHv h++Cl+ wl+++++CP+Cr
  KKY18956.1 381 RPKKLPCGHVLHFSCLRSWLERQQNCPTCR 410
                 34477************************9 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   2.2   2.4e-09   3.1e-06       1      41 []     343     409 ..     343     409 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2.4e-09
                 -TTT-S--SS-E.............................E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn............................elleCkHsfCskCirkilksrkkvkCPlC 41 
                 C+iC ee++                               + l+C+H ++++C+r++l+  ++++CP+C
  KKY18956.1 343 CIICREEMTAWPpndtntgtaagtearrrmqnsvaermrpKKLPCGHVLHFSCLRSWLE--RQQNCPTC 409
                 777777776655567777777777777777777788888889*****************..8899**** PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.4   3.1e-09   3.9e-06       1      39 []     343     407 ..     343     407 .. 0.95

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.1e-09
  zf-RING_UBOX   1 CpIClelft.............................dPlvlpCGHtFCreClwelskslegafkCP 39 
                   C IC+e++t                             +P++lpCGH+++ +Cl   +++le++  CP
    KKY18956.1 343 CIICREEMTawppndtntgtaagtearrrmqnsvaermRPKKLPCGHVLHFSCL---RSWLERQQNCP 407
                   99**********************************9999558***********...999*******9 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.15   1.9e+02      38      47 ..     341     350 ..     335     353 .. 0.76
   2 !   22.8   1.7   4.8e-08   6.1e-05      18      48 ..     385     414 ..     378     416 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.15
                 -B-TTT--B- CS
  zf-C3HC4_3  38 kkCpiCrrpi 47 
                 + C iCr+++
  KKY18956.1 341 DVCIICREEM 350
                 5699999876 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 4.8e-08
                 TTEEEEEE-HHHHHHHHHTT-B-TTT--B-- CS
  zf-C3HC4_3  18 lpCgHlvlCeeCaekllkrkkkCpiCrrpie 48 
                 lpCgH+ l  +C++++l+r+++Cp Crrp+ 
  KKY18956.1 385 LPCGHV-LHFSCLRSWLERQQNCPTCRRPVL 414
                 7*****.*********************985 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   3.6   1.4e-08   1.8e-05      17      40 .]     386     409 ..     378     409 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.4e-08
  zf-C3HC4_2  17 pCgHvfCqkCilrsLeekneCPlC 40 
                 pCgHv + +C++ +Le++++CP+C
  KKY18956.1 386 PCGHVLHFSCLRSWLERQQNCPTC 409
                 9*********************** PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.5   5.9e-08   7.6e-05      24      47 ..     387     408 ..     379     410 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 5.9e-08
  Zn_ribbon_17  24 CeHvlHasCarewfenddlaeCps 47 
                   C+HvlH+sC+r+w+e ++  +Cp+
    KKY18956.1 387 CGHVLHFSCLRSWLERQQ--NCPT 408
                   ***************999..8986 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.75   9.6e+02      34      43 ..     338     347 ..     325     348 .. 0.80
   2 !   15.6   4.9   9.1e-06     0.012      14      44 .]     381     411 ..     342     411 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.75
   zf-RING_5  34 ekeavCpiCr 43 
                 ++ +vC iCr
  KKY18956.1 338 AAADVCIICR 347
                 56789****8 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 9.1e-06
   zf-RING_5  14 kfyltsCgHifCekClkkllekeavCpiCrk 44 
                 ++  ++CgH+++ +Cl+  le++++Cp+Cr+
  KKY18956.1 381 RPKKLPCGHVLHFSCLRSWLERQQNCPTCRR 411
                 47779************************95 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       5.9   7.5e+03       1       7 [.     343     349 ..     342     354 .. 0.62
   2 !   17.1   0.8   2.8e-06    0.0036      14      40 ..     385     413 ..     376     418 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.9
  Prok-RING_4   1 CvlCgeq 7  
                  C++C+e+
   KKY18956.1 343 CIICREE 349
                  5566554 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 2.8e-06
  Prok-RING_4  14 epCgHlvCkeCfdsk..dlssCPlCqrri 40 
                   pCgH++  +C+ s+    + CP C+r +
   KKY18956.1 385 LPCGHVLHFSCLRSWleRQQNCPTCRRPV 413
                  59************9855559*****976 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0       0.2   2.5e+02      17      37 ..     336     356 ..     323     365 .. 0.80
   2 ?   12.7   0.8   7.5e-05     0.096      52      79 ..     387     411 ..     383     416 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.2
                 .-SSSSB-TTT-SBTTS--TT CS
  zf-ANAPC11  17 dvasddvcGicrvsfdGtcps 37 
                 +va  dvc icr +     p+
  KKY18956.1 336 EVAAADVCIICREEMTAWPPN 356
                 57789*******988776666 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 7.5e-05
                 TS-EEEHHHHHHHHHHHSTSSB-TTTSS CS
  zf-ANAPC11  52 ckhnfhlhcilkwletetskglcpmcrq 79 
                 c h++h  c+  wle+   +++cp cr+
  KKY18956.1 387 CGHVLHFSCLRSWLER---QQNCPTCRR 411
                 9*************97...578****97 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.2   4.1e-05     0.053      11      42 .]     382     409 ..     380     409 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.1e-05
  zf-C3HC4_4  11 PvsleCGhsfClsCisslqkepdgeqllCplC 42 
                 P  l+CGh+  +sC+ s+ + +++    Cp C
  KKY18956.1 382 PKKLPCGHVLHFSCLRSWLERQQN----CPTC 409
                 8899***********999988855....9999 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.55   7.1e+02       2      10 ..     343     351 ..     343     354 .. 0.90
   2 ?   11.1   0.1   0.00019      0.25      16      29 .]     383     396 ..     373     396 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.55
  zf-RING_11   2 CsICLeefk 10 
                 C IC ee++
  KKY18956.1 343 CIICREEMT 351
                 9*****997 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00019
  zf-RING_11  16 filpCsHtFHfkCI 29 
                   lpC+H+ Hf C+
  KKY18956.1 383 KKLPCGHVLHFSCL 396
                 579**********5 PP

>> zf-RING-like  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.0    0.0004      0.51      18      43 .]     386     409 ..     381     409 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
  zf-RING-like  18 sCnvrlHvdCfqhyirthsskkCpkC 43 
                    C   lH  C++  +  +++++Cp+C
    KKY18956.1 386 PCGHVLHFSCLRSWL--ERQQNCPTC 409
                   599**********99..45557**** PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       9.1   1.2e+04      39      46 ..     342     349 ..     339     350 .. 0.62
   2 ?    9.4   1.4   0.00072      0.92      19      46 ..     386     412 ..     380     413 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 9.1
   zf-RING_4  39 rCPaCree 46 
                 +C  Cree
  KKY18956.1 342 VCIICREE 349
                 56666664 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00072
   zf-RING_4  19 eCgyqiClfCyhrileeeegrCPaCree 46 
                 +Cg+ +   C++  le  ++ CP Cr++
  KKY18956.1 386 PCGHVLHFSCLRSWLE-RQQNCPTCRRP 412
                 6999999******996.699******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (823 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       948  (0.0528752); expected 358.6 (0.02)
Passed bias filter:                      665  (0.0370907); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.54
# Mc/sec: 4567.60
//
Query:       KKY18957.1  [L=402]
Description: putative mfs [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00023   20.2   8.9    0.00023   20.2   8.9    2.2  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   8.9   1.3e-08   0.00023     117     327 ..      23     284 ..      18     292 .. 0.71
   2 !    4.5   4.6   0.00076        14     121     173 ..     340     390 ..     335     401 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.3e-08
       MFS_1 117 eergraigllsagfslGailgpllggllasslg.........Wravfyilaivsllafvlfllllpeepperkrkspkeee.........kgtgpaplv 197
                 +  +r+ gl+++++++Ga++  ++   l + +           + ++y++a+v+l++ v  + ++  ++ +    +++             ++++a+++
  KKY18957.1  23 SSSSRVAGLVGVFTGIGALISLAVFLPLPARFQkagispaqaLQDSYYVVAAVALVLSV--WSFFGLRQIRDDEGKGIIMAirsfrsdktLSDAEAKIT 119
                 5678999***********99966666555566666677655566669999999999977..36665555555555555553344555555555666666 PP

       MFS_1 198 pawkallkdpvlw.......illialllfffgfsg..........lltllplylqevlgls.......................glllaglllallalv 256
                 p w  + ++  +        +  +          g          ++ ++pl ++ +++ +                       ++ l++ l ++++l+
  KKY18957.1 120 PFWMRFSTSFIMGfknrkigLGYT----------GglvarassvgISLFIPLAINAQFKSAglcnvevldapaglpdikrrcprAYTLSAELTGVSQLI 208
                 655555555544223333332333..........233333345569999999766666666888888888999999********99999999******* PP

       MFS_1 257 gailallagrlsdrlgrrrrlllallllllaalglallavt.....ssavllllvlvliGfglgfvfpsllalasd 327
                 ++ +a+ +g+ls rl+r ++l+++  +++++++ + +         + +v   ++++liG+ +  + +++l ++sd
  KKY18957.1 209 ALLAAPGFGYLSARLPRNIPLIFGACAGIAGYITFGISVQHkregvNGTVGDFVAMALIGLSQIAAIVCSLGILSD 284
                 **************99988888888888888888887777788777666666669999999888888777777766 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.00076
       MFS_1 121 raigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllp 173
                 +  g++s+  ++G+++    gg l + +++ ++fyi+a +  ++  l+++ l+
  KKY18957.1 340 SIAGMYSLYGGAGILILTKMGGSLFDKVSFGSPFYIMATFNGVL--LAACILT 390
                 55689999999*******************************99..4445554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2556.50
//
Query:       KKY18958.1  [L=660]
Description: putative choriogenin hminor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 4357.26
//
Query:       KKY18959.1  [L=450]
Description: putative tubulin subunit alpha-2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-66  221.8   0.0    1.2e-65  221.4   0.0    1.1  1  Tubulin    Tubulin/FtsZ family, GTPase domain
      1e-43  148.5   0.0    1.8e-43  147.7   0.0    1.3  1  Tubulin_C  Tubulin C-terminal domain
      0.003   17.3   0.0     0.0053   16.5   0.0    1.4  1  Tubulin_3  Tubulin domain


Domain annotation for each model (and alignments):
>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.4   0.0     2e-69   1.2e-65       1     196 [.       4     214 ..       4     215 .. 0.99

  Alignments for each domain:
  == domain 1  score: 221.4 bits;  conditional E-value: 2e-69
                 EEEEEEEHHHHHHHHHHHHH...HHHCH................HHHT.....TTEEEEE....EEESBHHHHHTS-GS........EEEE--CCCCTT CS
     Tubulin   1 eiivigvGqcGnqignelwellakehgiqsdg............dslesfFsesgkveyiprsvaidtdpqvlneikags..elfnpnklllgkegagn 85 
                 ei+++++Gq+G q+gn++wel++ ehg++ dg             + +sfF+e+g+++y+prs+++d+dp+ ++ei++g+  +lf+p+ l++gke+a+n
  KKY18959.1   4 EICHLHIGQAGTQLGNAAWELYLLEHGLKADGrkdpdagdigevGAYDSFFTETGNGKYVPRSIFVDLDPSPIDEIRTGTyrQLFHPELLISGKEDAAN 102
                 799*************************99999***********99***************************************************** PP

                 C--TT-HHHHHHHHHHTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--.GG.G-HHHHHHHHHHHHHHHHT-SE CS
     Tubulin  86 ngaggypevgkeaaeeileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPs.efsevvvepynailalkelieesda 183
                 n+a+g++++gke+ e++ ++ir+ v++c slqgf+i++s+gGGTGSG+g+++le+l  +y k+ ++ + v+Ps  +s+ vvepyna+l++++ ie+sd+
  KKY18959.1 103 NYARGHYTIGKEIVETVIDKIRRVVDNCSSLQGFLIFHSFGGGTGSGFGALLLERLATDYGKKCKLEFAVYPSpLISTAVVEPYNAVLSTHSTIENSDC 201
                 **************************************************************************999********************** PP

                 EEEEEHHHHHCCS CS
     Tubulin 184 vividNdaLlkil 196
                 ++++dN+a ++i+
  KKY18959.1 202 TFLVDNEAVYDIC 214
                 ************9 PP

>> Tubulin_C  Tubulin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.7   0.0     3e-47   1.8e-43       1     124 [.     264     392 ..     264     393 .. 0.99

  Alignments for each domain:
  == domain 1  score: 147.7 bits;  conditional E-value: 3e-47
                 TTC-EEEEEEESSSCTTTTTCS-HHHHHHHHHTCSGGGBSSSTSTTTSSEEEEEEEEEESSSHHHHHHHHHHHHHTTTS-BSTTSTTTEEEEEEECECT CS
   Tubulin_C   1 PrlhFlltsyaPlvsaekaavektsvqdvtrallepknimvkvdprkgkylaiallirGdvepkevnkavqrikekkkaqfveWiptgikvalnkkspy 99 
                 Pr+h++l+syaP++s++ka +e+ +v+d+t +++ep+n+mv +dpr+gk++a+all+rGdv+p+++++a++ +k+k + ++veW+ptg+k ++n+++p+
  KKY18959.1 264 PRIHYPLISYAPVISSNKAGHESFRVSDLTFQCFEPNNQMVVCDPRNGKFMAVALLYRGDVVPRDCTAAIAALKAKASFNLVEWCPTGFKLGINYNKPM 362
                 9************************************************************************************************** PP

                 -TTTS.....SCEEEEEEEEGGGHHHHHHH CS
   Tubulin_C 100 vkkqs.....kvsvlmlaNttsiaelfkrl 124
                 v+++      ++sv ml+Ntt+iae+++rl
  KKY18959.1 363 VVPGAelapvDRSVSMLSNTTAIAEAWSRL 392
                 ****99**********************98 PP

>> Tubulin_3  Tubulin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   8.9e-07    0.0053      61     107 ..     121     167 ..      86     209 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 8.9e-07
   Tubulin_3  61 drdlrpfaeecdqlrglqvftgvddaWG.Gfaakylerlrdeygkksi 107
                 d  +r  +++c +l+g+ +f +     G Gf+a  lerl  +ygkk+ 
  KKY18959.1 121 D-KIRRVVDNCSSLQGFLIFHSFGGGTGsGFGALLLERLATDYGKKCK 167
                 4.4899****************99887769***************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.51
# Mc/sec: 2631.76
//
Query:       KKY18960.1  [L=1094]
Description: putative chitin synthase d [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.3e-286  949.1   0.9     8e-286  948.7   0.0    1.5  2  Chitin_synth_2   Chitin synthase
      1e-14   54.9   3.1    3.6e-14   53.1   3.1    2.0  1  Glyco_trans_2_3  Glycosyl transferase family group 2
    1.8e-10   41.1   0.0    9.7e-10   38.7   0.0    2.1  2  Glyco_tranf_2_3  Glycosyltransferase like family 2
     0.0049   16.7   0.0       0.22   11.3   0.0    2.4  2  Glycos_transf_2  Glycosyl transferase family 2
     0.0062   16.0   0.1      0.043   13.3   0.0    2.1  2  Glyco_transf_21  Glycosyl transferase family 21
  ------ inclusion threshold ------
      0.015   15.4   0.1        0.4   10.9   0.1    2.6  2  Cyt-b5           Cytochrome b5-like Heme/Steroid binding doma
       0.32   10.2   3.5        6.2    5.9   1.0    2.3  2  Peptidase_M56    BlaR1 peptidase M56


Domain annotation for each model (and alignments):
>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2      0.56   1.4e+03     461     485 ..     386     410 ..     374     438 .. 0.66
   2 !  948.7   0.0  3.1e-289    8e-286       4     526 ..     557    1078 ..     554    1079 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.56
  Chitin_synth_2 461 wllvyllalPifnfvlPlyafwhld 485
                       l+++l++ + +f+l +  +w + 
      KKY18960.1 386 VSLIFILSIVLIKFFLAIAFHWVFS 410
                     3478899999999999988888875 PP

  == domain 2  score: 948.7 bits;  conditional E-value: 3.1e-289
  Chitin_synth_2    4 iiaksvaalqlidkrslefqlkfticlvtaysegeeglrttldslastdyddkrklllvvcdGlikGsGndkstPeivldllkdavspkedve 96  
                      +i++ v+++++ ++++++f+l++t+ lvtayseg eglrttlds+a+tdy++++k +lv+cdG+ikG+G++ stPei+l++++d+ +  edv+
      KKY18960.1  557 FIHEGVVPQPPPEWQPFGFPLAHTLSLVTAYSEGAEGLRTTLDSIATTDYPNSHKTILVICDGMIKGKGENLSTPEIALSMMGDHAILPEDVQ 649 
                      78999**************************************************************************************** PP

  Chitin_synth_2   97 plsyvavaeGskrhnkakvyaGfyeyeddstvpeekqqrvPlivvvkvGtpseasekkPGnrGkrdsqiilmsflekvtfdermteleyelfk 189 
                      p+syvava+Gskrhn+akvyaGfy+y +ds v  +kqqrvP++v+vk+Gtp+e+s++kPGnrGkrdsqiilmsfl+kv+fdermteleye+f+
      KKY18960.1  650 PFSYVAVASGSKRHNMAKVYAGFYDYGEDSRVRPDKQQRVPMMVIVKCGTPDEESKAKPGNRGKRDSQIILMSFLQKVMFDERMTELEYEIFN 742 
                      ********************************************************************************************* PP

  Chitin_synth_2  190 kikkviGvspdfyeivlmvdadtkvapdsltrlvaalvkdpeilglcGetkiankkeswvtaiqvfeyyishhlskafesvfGsvtclPGcfs 282 
                       ++k++G+spdfye+vlmvdadtkv+pdslt +vaa+vkdpei+glcGet+iank+ swv+ iqvfey+ishh+skafe+vfG+vtclPGcfs
      KKY18960.1  743 GLWKITGMSPDFYETVLMVDADTKVFPDSLTYMVAAMVKDPEIMGLCGETTIANKRASWVSKIQVFEYFISHHQSKAFEAVFGGVTCLPGCFS 835 
                      ********************************************************************************************* PP

  Chitin_synth_2  283 lyrikaakgadgkwvPilvspeiveeysenvvdtlhkknllllGedrylttlllktfpkrktvfvpqakcktvaPdtfkvllsqrrrwinstv 375 
                      +yrika+kg++++wvPil++p++ve+ysenvvdtlhkknllllGedryl++l+lktfpkrk+vfvpqa+ckt++P++f+vllsqrrrwinstv
      KKY18960.1  836 MYRIKAPKGGQNYWVPILANPDVVEHYSENVVDTLHKKNLLLLGEDRYLSSLMLKTFPKRKQVFVPQAVCKTTVPEEFSVLLSQRRRWINSTV 928 
                      ********************************************************************************************* PP

  Chitin_synth_2  376 hnllelvlvrdlcGtfcfsmrfvvfieligtvvlPvaiaftlylivasilksklvpviplvllaivlGlpailivltarkleyvawllvylla 468 
                      hnl+elvlvrdlcGtfcfsm+fvvf++l+gtvvlP+ai ft+y+i++si++ k+v+v +lvlla++lGlpa+livlta++++y++w+++yl +
      KKY18960.1  929 HNLMELVLVRDLCGTFCFSMQFVVFMDLVGTVVLPAAISFTIYVIIISIVR-KPVQVTTLVLLALILGLPAVLIVLTAHRWSYIVWMMIYLGS 1020
                      *************************************************99.9**************************************** PP

  Chitin_synth_2  469 lPifnfvlPlyafwhlddfswGetrvveGekkkkaageaegefdsskivlkrfeefer 526 
                      lPi+nfvlPlyafw++ddfswGetr+++Gek+kka  e+egefdsski++kr+ +fe+
      KKY18960.1 1021 LPIWNFVLPLYAFWKFDDFSWGETRKTAGEKTKKAGIEYEGEFDSSKITMKRWGDFEK 1078
                      ********************************************************97 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   3.1   1.4e-17   3.6e-14       2     189 ..     758    1018 ..     757    1035 .. 0.73

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 1.4e-17
  Glyco_trans_2_3    2 illlDaDtvlppdclreiaaela.spevaivqgpvlvm.nvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalq...... 85  
                       +l++DaDt + pd+l + +a +  +pe+  ++g ++++  +a+w+++++++++ ++h  +  + + +g+v+ ++G  ++ r++a +      
       KKY18960.1  758 VLMVDADTKVFPDSLTYMVAAMVkDPEIMGLCGETTIAnKRASWVSKIQVFEYFISHHQSKAFEAVFGGVTCLPGCFSMYRIKAPKggqnyw 849 
                       899***************9977758*********9997478************9******************************99998999 PP

  Glyco_trans_2_3   86 .......evg..........gwdgdessvsEDfdmglrlqrkG..yrvrfvpeslvkekspltlraalrQrkRwayGc..eleklil..... 151 
                              +v+            + +   ++ED +++  +++     + +fvp++++k+ +p ++   l Qr+Rw+     +l++l+l     
       KKY18960.1  850 vpilanpDVVehysenvvdtLHKKNLLLLGEDRYLSSLMLKTFpkRKQVFVPQAVCKTTVPEEFSVLLSQRRRWINSTvhNLMELVLvrdlc 941 
                       9888888333444444345433344559****9887555444466899*****************************765223333245566 PP

  Glyco_trans_2_3  152 ............................................lvrllgylgsllwsalplhlallllfsllalalvllll 189 
                                                                   +     +  + l  +lp+ l++l    ++++++++++l
       KKY18960.1  942 gtfcfsmqfvvfmdlvgtvvlpaaisftiyviiisivrkpvqvtT-----LVLLALILGLPAVLIVLTAHRWSYIVWMMIYL 1018
                       666667777788888888888888888887777766544322221.....11222223345555555555555555555443 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.64   1.6e+03       6      34 ..     582     612 ..     578     632 .. 0.76
   2 !   38.7   0.0   3.8e-13   9.7e-10      88     228 ..     755     924 ..     732     926 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.64
  Glyco_tranf_2_3   6 vlVptfneed.vlgevlesllaqeypr.vev 34 
                       lV+++ e +  l+ +l+s+++ +yp+  ++
       KKY18960.1 582 SLVTAYSEGAeGLRTTLDSIATTDYPNsHKT 612
                      589999999967888******9999774222 PP

  == domain 2  score: 38.7 bits;  conditional E-value: 3.8e-13
  Glyco_tranf_2_3  88 sdlvllvDdDtvvePdtlkrllqffltpkvgavgtpvfl...lnrstlvsalgalefaerhlrflaarralg.vltlnGsgslirrevlkele. 176
                      ++ vl+vD+Dt v Pd+l ++++++  ++++++g + ++   + r ++vs  + +e+ + h++  a+   +g v++l G +s++r +  k  + 
       KKY18960.1 755 YETVLMVDADTKVFPDSLTYMVAAM-VKDPEIMGLCGETtiaNKRASWVSKIQVFEYFISHHQSKAFEAVFGgVTCLPGCFSMYRIKAPKGGQn 847
                      5689********************9.66666777433332435699************************9878***********999888889 PP

  Glyco_tranf_2_3 177 ......................gldp.lflltdDy.elglrlrr.agfrtayvpgaavrevfpsslkayikqrnRwv 228
                                            ++ + l ll++D   ++l+l+   + + ++vp+a++ ++ p++++ +  qr+Rw+
       KKY18960.1 848 ywvpilanpdvvehysenvvdtLHKKnLLLLGEDRyLSSLMLKTfPKRKQVFVPQAVCKTTVPEEFSVLLSQRRRWI 924
                      9*******************9655558999999972556777778899999*************************7 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.043   1.1e+02       4      37 ..     584     619 ..     583     627 .. 0.92
   2 !   11.3   0.0   8.5e-05      0.22      82     164 ..     757     840 ..     748     843 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.043
                      EEESS-.TTTHHHHHHHHHHH.GGCCEEEEEEEEES CS
  Glycos_transf_2   4 iptyNe.ektlletlesllaq.dpypdfeiivvDDg 37 
                      +++y e ++ l+ tl+s++   +p ++++i+v+ Dg
       KKY18960.1 584 VTAYSEgAEGLRTTLDSIATTdYPNSHKTILVICDG 619
                      899******************999999999999887 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 8.5e-05
                      EEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS...EEEECCHCCCCHCCCCCCSTTCSTCCCEEEEH CS
  Glycos_transf_2  82 yilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrv...generlyfkerkrslkgnlsfeigsaallrre 164
                       +l +DaD+ + pd l  +v+a+ kd++  ++g    +   +++ ++ +++   ++     + +     +g++++  g+++++r +
       KKY18960.1 757 TVLMVDADTKVFPDSLTYMVAAMVKDPE--IMGLCGETTIANKRASWVSKIqvfEYFISHHQSKAFEAVFGGVTCLPGCFSMYRIK 840
                      6899*********************777..44444444444444444444435444444444555556778899999999999876 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.7e-05     0.043      25     109 ..     749     838 ..     744     841 .. 0.70
   2 ?   -0.1   0.0      0.22   5.6e+02     127     172 ..     879     924 ..     877     925 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.7e-05
  Glyco_transf_21  25 aleaakydllvisDsdvrvkpdyLeellaaled.pkvglVts.lpvgsdakglaaaleaafl...ntl.agvlqaklsglgfavGksmalr 109
                      +++   y+ +++ D+d+ v pd L+ ++aa+ + p++  +++ + ++ +++++ +++ ++f    + + ++++ a ++g+ +  G + ++r
       KKY18960.1 749 GMSPDFYETVLMVDADTKVFPDSLTYMVAAMVKdPEIMGLCGeTTIANKRASWVSKI-QVFEyfiSHHqSKAFEAVFGGVTCLPGCFSMYR 838
                      55666799*******************999865588877777255566666777776.444312333335555556688888888877776 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.22
  Glyco_transf_21 127 AeDyalgkllraa..GlkvvlspapiaqtsvprrsslrallaRqlrWa 172
                       eD  l+ l+ +     k v++p+++++t vp+   ++ ll++  rW 
       KKY18960.1 879 GEDRYLSSLMLKTfpKRKQVFVPQAVCKTTVPE--EFSVLLSQRRRWI 924
                      567677766666666788999**********96..6999999999996 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00016       0.4      10      56 ..     166     222 ..     158     271 .. 0.74
   2 ?    1.4   0.0      0.14   3.6e+02      40      71 ..     338     368 ..     333     371 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
                 CTTEEEEEETTEEEECTTTCCCST..........TCSHHHHTTTTSBBHHHHHHTT..G CS
      Cyt-b5  10 gkndlwvairgkVYDvskflskhp..........GgesailkyaGkDateafksvv..h 56 
                   ++ +++++g+ YD+s   s+hp          +  ++ +ky G+Da+  f+ v   +
  KKY18960.1 166 HVDSGYLIVHGQAYDLS--TSQHPaaagipldsnVLWDLSHKYGGQDASFMFQYVNgaC 222
                 55788************..788**99999999998889999999999998888765444 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.14
                 HTTTTSBBHHHHHHTTGGCHHHHHHHHG.GEEE CS
      Cyt-b5  40 lkyaGkDateafksvvhsekdaekllkk.ylvG 71 
                 ++++G D+t af++   + k + + l +  +vG
  KKY18960.1 338 GEFRGVDVTHAFQTS-AERK-VGQCLSQiIKVG 368
                 5799********998.4333.455556656666 PP

>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.008        20      90     155 ..     371     438 ..     340     451 .. 0.69
   2 ?    5.9   1.0    0.0024       6.2       6      45 ..     982    1021 ..     961    1068 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.008
  Peptidase_M56  90 atdvkkvewktilkillliWivgalilllyliaallvlkkr..fvrklgklraeelkeaLkeakeemq 155
                    +t++     ++++ +++li+i+ ++++ ++l+ a+ ++ +r   + k+ k ++ + ++++++ +e+ +
     KKY18960.1 371 DTETVGCIASKVVLYVSLIFILSIVLIKFFLAIAFHWVFSRkySLPKSYKTSKAKRNKQIEDWTEDIY 438
                    4444445567889999*****99999999998888877655444556666666677777777777655 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0024
  Peptidase_M56    6 asiaaaiavllvlllrrilrrllsaiaaYalWlivllall 45  
                     ++++++++  l+l l  +l  l++ +++Y +W+++ l  l
     KKY18960.1  982 VQVTTLVLLALILGLPAVLIVLTAHRWSYIVWMMIYLGSL 1021
                     57899999999**********************9988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1094 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.51
# Mc/sec: 6461.04
//
Query:       KKY18961.1  [L=460]
Description: putative chitin synthase activator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-36  123.2  23.3    1.8e-05   25.3   1.3    7.6  7  Sel1      Sel1 repeat
  ------ inclusion threshold ------
      0.093   13.3   2.9         12    6.6   0.0    4.0  4  TPR_19    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.3   1.7e-05      0.16       1      38 []     154     191 ..     154     191 .. 0.86
   2 !   19.3   0.9   1.5e-07    0.0013       2      38 .]     193     227 ..     192     227 .. 0.93
   3 !   20.6   0.1     6e-08   0.00054       2      35 ..     229     261 ..     228     262 .. 0.91
   4 !   16.3   0.0   1.3e-06     0.012       3      38 .]     270     305 ..     268     305 .. 0.90
   5 !   23.6   0.0   6.8e-09   6.1e-05       2      38 .]     307     342 ..     306     342 .. 0.96
   6 !   25.3   1.3     2e-09   1.8e-05       2      37 ..     344     379 ..     343     380 .. 0.87
   7 !   16.3   0.0   1.3e-06     0.011       2      38 .]     382     416 ..     381     416 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.7e-05
        Sel1   1 aeAmyrLGmfylylnGlg.vpk.DpekAiewyekAAeqGd 38 
                 + A+y L+    y  G     k D++kA+ ++  A ++G+
  KKY18961.1 154 PFAQYYLA--DGYASGMFnKGKeDYDKAFPLFISASKHGH 191
                 57******..888***9544445****************8 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 1.5e-07
        Sel1   2 eAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 eA yr +  ++y++G g+  D  kA+++y+++A++++
  KKY18961.1 193 EAGYRAA--LCYEFGWGTRSDAGKAVQFYRQSASKNH 227
                 6779***..999**********************998 PP

  == domain 3  score: 20.6 bits;  conditional E-value: 6e-08
        Sel1   2 eAmyrLGmfylylnGl.g.vpkDpekAiewyekAAe 35 
                  Am rLG   + l+G+ g +++ ++++++w+++AAe
  KKY18961.1 229 GAMLRLG--RACLTGDlGlIKR-YKEGVKWLKRAAE 261
                 59*****..777****987999.************7 PP

  == domain 4  score: 16.3 bits;  conditional E-value: 1.3e-06
        Sel1   3 AmyrLGmfylylnGl.g.vpkDpekAiewyekAAeqGd 38 
                 A y LG   l+++G  + +  D++   +++ k+A++G+
  KKY18961.1 270 APYELG--VLHETGYgDdIFEDERYSAQLFTKSADLGH 305
                 77****..9999999635999****************9 PP

  == domain 5  score: 23.6 bits;  conditional E-value: 6.8e-09
        Sel1   2 eAmyrLGmfylylnGlg.vpkDpekAiewyekAAeqGd 38 
                 eA yrLG   +y++G+   p+Dp + i++y  AA++G+
  KKY18961.1 307 EANYRLG--HAYEHGKLtCPRDPALSIHFYTGAAQRGH 342
                 8******..*******99******************98 PP

  == domain 6  score: 25.3 bits;  conditional E-value: 2e-09
        Sel1   2 eAmyrLGmfylylnGlg..vpkDpekAiewyekAAeqG 37 
                  Am++L+ +y  + G +  ++kD+++A+ew +kAAe+G
  KKY18961.1 344 LAMMALCAWY--MVGADpiLEKDENEAYEWAKKAAEAG 379
                 79*****555..****557999**************99 PP

  == domain 7  score: 16.3 bits;  conditional E-value: 1.3e-06
        Sel1   2 eAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                  A y +G  y+ + G g  +D  +A  wy +AAe+Gd
  KKY18961.1 382 KAEYCVG--YFTEMGIGCRTDSLEANVWYVRAAEHGD 416
                 6778899..777************************7 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.026   2.3e+02      41      62 ..     138     159 ..     136     162 .. 0.85
   2 ?    1.4   0.0     0.051   4.6e+02       5      35 ..     174     202 ..     171     203 .. 0.86
   3 ?    6.6   0.0    0.0013        12       6      36 ..     211     239 ..     208     267 .. 0.90
   4 ?   -3.4   0.0       1.6   1.4e+04      23      35 ..     304     316 ..     294     317 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.026
      TPR_19  41 ldeAealLdalpeedpddarya 62 
                 l+eA+ +L++l +     a+y 
  KKY18961.1 138 LKEARSILQRLSDRSYPFAQYY 159
                 689********99999888776 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.051
      TPR_19   5 gdyaeAlalleqalqedpk.naearllLAeal 35 
                 +dy+ A +l+ +a   + + +aea ++ A ++
  KKY18961.1 174 EDYDKAFPLFISA---SKHgHAEAGYRAALCY 202
                 79**********9...6666999999999998 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0013
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeall 36 
                 d   A+++++q   ++ +++ a l+L +a+l
  KKY18961.1 211 DAGKAVQFYRQS--ASKNHPGAMLRLGRACL 239
                 7889*******4..799************98 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 1.6
      TPR_19  23 knaearllLAeal 35 
                 ++ ea ++L  a+
  KKY18961.1 304 GHTEANYRLGHAY 316
                 5889999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 2870.93
//
Query:       KKY18962.1  [L=391]
Description: hypothetical protein UCRPC4_g04684 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.29   12.3   3.4       0.32   12.1   0.6    2.3  2  SOGA      Protein SOGA


Domain annotation for each model (and alignments):
>> SOGA  Protein SOGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.15   2.7e+03      59      84 ..      93     118 ..      67     121 .. 0.62
   2 ?   12.1   0.6   1.8e-05      0.32      20      85 ..     130     205 ..     125     218 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.15
        SOGA  59 sdsskeaelkeeLklarlqineLsgk 84 
                 ++++ e+e++ +L  + ++  e+s++
  KKY18962.1  93 EAAEAEEEMRCRLDNVTKEGLEISRR 118
                 44455666666666666666666665 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 1.8e-05
        SOGA  20 rrslseleeenkqlteeLnkyksklgeeessleeee..........eassdsskeaelkeeLklarlqineLsgkv 85 
                 r sls +  + ++l+ ++  ++sk g++ ++l+e+           ++++ +++ ++l+ ++kl r++++ L+ ++
  KKY18962.1 130 RTSLSSIVSQFQSLRDQILGFRSKVGSDLETLNEDVttningirgkAEGRRMERVEQLETRMKLGREKATLLGNRL 205
                 6799************************99998865999*****998899999*******************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       875  (0.0488036); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 2371.31
//
Query:       KKY19116.1  [L=507]
Description: putative alpha-mannosyltransferase cmt1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-62  210.0   0.0    5.6e-62  209.6   0.0    1.2  1  CAP59_mtransfer  Cryptococcal mannosyltransferase 1


Domain annotation for each model (and alignments):
>> CAP59_mtransfer  Cryptococcal mannosyltransferase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.6   0.0   3.1e-66   5.6e-62       2     240 ..     159     395 ..     158     396 .. 0.88

  Alignments for each domain:
  == domain 1  score: 209.6 bits;  conditional E-value: 3.1e-66
  CAP59_mtransfer   2 vfiAanlynneellpewleallelirfLgpenvfvSiyesgskdgtkeaLraleaelealgversivlneeteleldelesgkkelkRIeyLae 95 
                      +++A++l++n++llp+++++l+e+i fLgp+n++vSi+e++s+dgt e+L+a+  el+a g+ + ++ ++ +         + +  +RI+ Lae
       KKY19116.1 159 FYFALDLHDNADLLPRLMGTLIEIICFLGPRNCAVSIVEGRSEDGTYEILKAVTDELKAFGILYILQKDDIN---------PLEGGNRIQALAE 243
                      79*************************************************************999654333.........445789******* PP

  CAP59_mtransfer  96 lRNkaLepLeelakegkekfdkvlFlnDvvftaedileLleq...qngeydaaCalDfskkpl....kfyDtwvlRdleGkefl........sp 174
                       RNkaL+pL + + e+ ++ + v+FlnDv++++edileL++q   q  ++d++C +D++   +    +fyD w++Rd++G++f+         +
       KKY19116.1 244 FRNKALRPLISGK-EQWSSNTIVIFLNDVAICMEDILELIHQhrfQ--QADMVCPMDWTY--VgpdpTFYDIWIARDMDGESFFeipkdrswDS 332
                      *********9844.34444566********************6443..5**********5..24577*********************999956 PP

  CAP59_mtransfer 175 lwpyfks.eesreaveagldpvpVksCWnGmvaldaepflaeeklrFRaseesaseleasEccliha 240
                       w +  + +++r+++ +g+ p++V+sCWnG+++++ ep+l +++l FR++ e + e+ ++E++++++
       KKY19116.1 333 AWNLLWNnPDARSRLFTGK-PFQVFSCWNGAAVFRDEPIL-DHGLSFRSNIE-G-ECYQGEPQIFCK 395
                      6766655488999999987.*******************6.7*******755.4.9*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.50
# Mc/sec: 3068.99
//
Query:       KKY19117.1  [L=1187]
Description: putative fibronectin type iii domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-07   32.0   0.0      3e-07   30.7   0.0    1.7  1  fn3          Fibronectin type III domain
  ------ inclusion threshold ------
       0.14   12.1   0.1       0.35   10.8   0.1    1.6  1  DUF4945      Domain of unknown function (DUF4945)
       0.19    9.2  35.4       0.29    8.6  35.4    1.2  1  DUF3584      Protein of unknown function (DUF3584)
        1.1    9.4  17.9       0.65   10.2  15.1    2.0  2  Fib_alpha    Fibrinogen alpha/beta chain family
        4.9    7.4  37.4       0.75   10.0  19.6    2.9  2  TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
        5.9    5.7  47.6      0.048   12.5  18.2    2.3  2  Spc7         Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   9.9e-11     3e-07       4      85 .]      73     164 ..      70     164 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 9.9e-11
                 CEEEEEEESSSEEEEEEE-CSSSSSTEEEEEEEEEETTSTS...........TEEEEEECSTSSEEEEESSSTTEEEEEEEEEEETSEEEEEE CS
         fn3   4 snlsvsevtstsltvsWeppkdgggpitgYeveyrekgsee...........ewneftvprtttsvtltgLkpgteYevrVqavngggegpes 85 
                  +++++++++++++++W+ p d +++i++  +++ ++ +++             +    +r++t v + +Lk g+ Y +rV +v+++g   +s
  KKY19117.1  73 PEVTLEDISDHEVQITWKLP-DVHSSIQKHVIQLNSSKGTSdsgvvlmdkglTMTVGETKRHETAVSILNLKSGAFYDLRVFTVSAAGFQTPS 164
                 7899****************.7************777777779****99555555555777799***********************976665 PP

>> DUF4945  Domain of unknown function (DUF4945)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00012      0.35       6      40 ..      60      94 ..      57     114 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
     DUF4945  6 vveskdGvslPkvedlksslvddndvkltWkiPdn 40
                v+  k G  +P+  +++ + + d++v++tWk+Pd 
  KKY19117.1 60 VLVDKLGLDIPPAPEVTLEDISDHEVQITWKLPDV 94
                566678***************************94 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  35.4   9.8e-05      0.29     257     485 ..     256     477 ..     236     492 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 9.8e-05
     DUF3584 257 leslelrLsllkgelkadeerlaekqeevqeakaelkqqlrtledelkeaidelnqelsaakaklaakeselealeeqkkkyedadieklkadldqlps 355
                 l  l +r + ++++ +a+e +la++ +e++++ +el+ ++++l+  lke +de++++l ++ +k++ +++     +++k+k ++++  ++k+  + +  
  KKY19117.1 256 LVQLSERFQKIQQDNEAAEGQLADEDKEFEASLKELEVKRDELKHSLKE-RDEASNDLRKQVHKMESANRSAQSEKSKKEKLLQQKEAQRKKRREDITR 353
                 5567889999999999999999999999999999999999999999998.5788899999999999999999999999999999999999999999999 PP

     DUF3584 356 irseleeleeeldaltekhqdvqekydrrkqkikeeleeeleklkerleaireekdrl..kaaieealealesqlrkqleaqkeelneeekelesrlse 452
                 ++++ e +eeel++++ +   v+++ ++r+ ++ ++ e ++++ k   e+i+e+  ++  +++++++l+a e++         e+++ ++ ele++  +
  KKY19117.1 354 WKEQTEGIEEELARIEAEKDTVEANKKQRIDELRQKIEGQQREVKGLDEVIKEKGTQVkeLEEERKHLHAEEEN--------DESREADRLELEKERLW 444
                 99999999999999999999999999999999999999999999999888888777763334444444443333........33444444444444444 PP

     DUF3584 453 lklrldsatateEeleqieeadealekaqeele 485
                 ++ + +       +  ++  a++++e+a+ +l 
  KKY19117.1 445 QEKLHNLNATYMSLCNALGLAKSQFEAARDRLA 477
                 444444333334455555555555555555555 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       0.8   2.4e+03      56      97 ..     261     302 ..     251     309 .. 0.60
   2 ?   10.2  15.1   0.00022      0.65      28     130 ..     307     409 ..     295     413 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.8
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH CS
   Fib_alpha  56 elvkeikdslrekqkskkdndnvikksskeleeeilrlketi 97 
                 e  ++i++  ++++ + +d+d+ ++ s kele +  +lk+++
  KKY19117.1 261 ERFQKIQQDNEAAEGQLADEDKEFEASLKELEVKRDELKHSL 302
                 455556666666666666666666666666666666555554 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00022
                 CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCH.HHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  28 kyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqe.snirvLqnvlesneqkiqkLeqdi 125
                 +  +d++k+++k+e+  +++++++++ e+l ++ + + +++ +  +  ++ ++ +++el  +i+  k+t+ a+  ++i +L++ +e ++++++ L + i
  KKY19117.1 307 EASNDLRKQVHKMESANRSAQSEKSKKEKLLQQKEAQRKKRREDITRWKEQTEGIEEELA-RIEAEKDTVEANKkQRIDELRQKIEGQQREVKGLDEVI 404
                 445666777777777777777777777777766666666666666666888888888888.8888999***9999*********************999 PP

                 HHHHH CS
   Fib_alpha 126 dqker 130
                 ++k  
  KKY19117.1 405 KEKGT 409
                 98865 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   8.7     0.029        85      52     105 ..     266     320 ..     253     329 .. 0.80
   2 ?   10.0  19.6   0.00025      0.75      18     100 ..     334     417 ..     319     424 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.029
  TMF_TATA_bd  52 lmkeneelk.elkkeleelekeleelqeryetlLellGeksEeveELraDvaDlK 105
                  + ++ne+ + +l++e +e e++l+el+ + ++l   l+e++E  ++Lr+ v  + 
   KKY19117.1 266 IQQDNEAAEgQLADEDKEFEASLKELEVKRDELKHSLKERDEASNDLRKQVHKME 320
                  455555554246677889999*****************************99885 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00025
  TMF_TATA_bd  18 sseirrlEgElaslkeelerleaerdeareeivklmkeneelkelk.keleelekeleelqeryetlLellGeksEeveELraD 100
                  ++ ++++E++ ++ +e+++r +++ + ++ee++++ +e ++++++k ++++el++++e  q++ + l e+++ek  +v+EL+++
   KKY19117.1 334 EKLLQQKEAQRKKRREDITRWKEQTEGIEEELARIEAEKDTVEANKkQRIDELRQKIEGQQREVKGLDEVIKEKGTQVKELEEE 417
                  56799************************************998651679*******************************975 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8  24.3     0.031        92     176     281 ..     256     364 ..     242     365 .. 0.84
   2 ?   12.5  18.2   1.6e-05     0.048     172     285 ..     354     465 ..     351     477 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.031
        Spc7 176 kaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervlee...ckgwsesevsrl 271
                   +l+e+++k+q+ +e  e    +e +e+  +l+el+++ +e+k  l+e+ e  ++l++++ ++++  +++++e +++e++l++   +++ +++++ r+
  KKY19117.1 256 LVQLSERFQKIQQDNEAAEGQLADEDKEFEASLKELEVKRDELKHSLKERDEASNDLRKQVHKMESANRSAQSEKSKKEKLLQQkeaQRKKRREDITRW 354
                 56889999999998888888778888999999999999999999999999999999999999999999999999999998765411168888999**** PP

        Spc7 272 keevkaleel 281
                 ke+ + +ee+
  KKY19117.1 355 KEQTEGIEEE 364
                 *999999976 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.6e-05
        Spc7 172 leeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevsr 270
                  +e+ + +eeel++++++++ +e+ +k+++ elr++++ ++ e++ + + ++e+ +q++elee+ ++l++  +e ++e +ea+r+  e+++  ++ + +
  KKY19117.1 354 WKEQTEGIEEELARIEAEKDTVEANKKQRIDELRQKIEGQQREVKGLDEVIKEKGTQVKELEEERKHLHA--EEENDESREADRLELEKERLWQEKLHN 450
                 5788999************************************************************955..677899999999988888888899*** PP

        Spc7 271 lkeevkaleeltgwk 285
                 l++++ +l++ +g++
  KKY19117.1 451 LNATYMSLCNALGLA 465
                 ********9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2329  (0.129901); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                       141  (0.00786435); expected 17.9 (0.001)
Passed Fwd filter:                        45  (0.0025099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.45u 0.35s 00:00:01.79 Elapsed: 00:00:00.58
# Mc/sec: 6148.26
//
Query:       KKY19118.1  [L=683]
Description: putative nuclear elongation and deformation protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-97  324.5   0.0    4.6e-97  323.9   0.0    1.3  1  LNS2             LNS2 (Lipin/Ned1/Smp2)
    3.1e-10   39.9   0.0    1.3e-09   37.9   0.0    2.1  3  Lipin_N          lipin, N-terminal conserved region
      0.005   16.4   0.1       0.87    9.1   0.0    2.7  3  Acid_phosphat_B  HAD superfamily, subfamily IIIB (Acid phosph


Domain annotation for each model (and alignments):
>> LNS2  LNS2 (Lipin/Ned1/Smp2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.9   0.0  7.7e-101   4.6e-97       1     226 []     332     554 ..     332     554 .. 0.99

  Alignments for each domain:
  == domain 1  score: 323.9 bits;  conditional E-value: 7.7e-101
        LNS2   1 kslrltseqlkslnLkeGkneieFsvttklqgtaeveakiylwksddkivisdidgtitksdvlGhilpllgkdwthkgvaklyskikengYkilylsa 99 
                 k+lrlts+qlk+lnLk+G+n+++F+v++     a+++a +ylw+ +  ivisdidgtitksd+lGh+l+++g+dwth gvakly++i +ngY+ilyl++
  KKY19118.1 332 KTLRLTSDQLKALNLKPGANTMSFTVNK-----ATCQAYMYLWSDKVPIVISDIDGTITKSDALGHVLNMIGRDWTHIGVAKLYTDIVANGYNILYLTS 425
                 79************************95.....99**************************************************************** PP

        LNS2 100 raigqaeltreylksveqdgvkLPkgPvllspdrllsalkreviekkpeefkiacLkdikklfpeeknpfyagfGnritdvisYkavgvpksriftinp 198
                 r++gqa++tr yl+ v+q+g+kLPkgPv++spdr+++al+re++ +kpe+fk+acL+di +lfp ++npfyagfGnr td++sY++v++p+sriftin+
  KKY19118.1 426 RSVGQADTTRAYLNGVNQEGYKLPKGPVIMSPDRTIAALRREIYLRKPEVFKMACLRDILSLFPGRTNPFYAGFGNRFTDALSYRTVNIPSSRIFTINS 524
                 *************************************************************************************************** PP

        LNS2 199 kgelkee..llkklkssyeslselvdkiFP 226
                 ++e++ +  +l+k+k+sy +++e+vd++FP
  KKY19118.1 525 NAEVSLDllNLNKYKTSYVNIREVVDHFFP 554
                 ****99977889*****************9 PP

>> Lipin_N  lipin, N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   2.2e-13   1.3e-09      54     102 .]       7      53 ..       3      53 .. 0.92
   2 ?   -4.2   0.0         3   1.8e+04      58      76 ..     350     368 ..     346     370 .. 0.77
   3 ?   -3.2   0.0       1.4   8.3e+03      70      84 ..     553     568 ..     530     577 .. 0.64

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 2.2e-13
     Lipin_N  54 lrskekvvdievNgeevdlkmklgeaGeafFveeteeeeevpeelatsp 102
                  +++   v+++vNg + ++ mklge GeafFv+et  +e++pe+++tsp
  KKY19118.1   7 AHPSTMQVEFKVNGVKQNYAMKLGEGGEAFFVFET--NESIPEAMQTSP 53 
                 5677789****************************..99********98 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 3
     Lipin_N  58 ekvvdievNgeevdlkmkl 76 
                   +++++vN  +++  m+l
  KKY19118.1 350 ANTMSFTVNKATCQAYMYL 368
                 5667889999999999887 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.4
     Lipin_N  70 v.dlkmklgeaGeafF 84 
                    ++m + e Ge f 
  KKY19118.1 553 FpPVSMLVKEGGEEFT 568
                 3378899999999885 PP

>> Acid_phosphat_B  HAD superfamily, subfamily IIIB (Acid phosphatase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       1.5   8.9e+03     196     218 ..     202     224 ..     191     225 .. 0.77
   2 !    4.2   0.0    0.0047        28      52      84 ..     353     384 ..     306     389 .. 0.72
   3 !    9.1   0.0   0.00015      0.87     121     154 ..     406     439 ..     398     459 .. 0.84

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1.5
                      EEEEESSGGGCHCCHHCTCCCCE CS
  Acid_phosphat_B 196 vlniGDnlsDlngakeaearger 218
                      v   GD + D++g k+ e+ g+r
       KKY19118.1 202 VTEAGDLMLDMTGYKSSEDDGIR 224
                      45579999999999998888876 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0047
                      HHHHHHHHHHHHCTHHHHTTSEEEEEE--BTTT CS
  Acid_phosphat_B  52 skavvdqaynsakeaelkadkkdavvfDiDeTv 84 
                      ++ +v++a+ +a +    +dk ++v+ DiD T+
       KKY19118.1 353 MSFTVNKATCQAYMYL-WSDKVPIVISDIDGTI 384
                      4445555555555555.448************8 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00015
                      HHHHHHHHHHTTEEEEEEEEEECCCHHHHHHHHH CS
  Acid_phosphat_B 121 alelikkvverGvkiffvsgRseeqkaaTvenLk 154
                        +l+  +v +G++i +++ Rs  q + T + L 
       KKY19118.1 406 VAKLYTDIVANGYNILYLTSRSVGQADTTRAYLN 439
                      5699********************9999977554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 4101.33
//
Query:       KKY19119.1  [L=344]
Description: putative alpha beta hydrolase fold protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-23   82.8   0.0    4.8e-23   82.1   0.0    1.3  1  Abhydrolase_1  alpha/beta hydrolase fold
    5.2e-12   46.8   0.0    6.5e-12   46.5   0.0    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    4.6e-05   22.8   0.0    6.8e-05   22.2   0.0    1.4  1  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.057   12.1   0.0      0.085   11.5   0.0    1.2  1  AXE1           Acetyl xylan esterase (AXE1)


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0   1.1e-26   4.8e-23       1     219 [.      36     264 ..      36     271 .. 0.74

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 1.1e-26
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB......CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHH CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacin.....ddygtasvaddldrildalgddkltlvGhSmGGmialaya 91 
                    p+l++lhG+p ++++w++  +a  L+   ++villDlrG+g+Ss++ ++++       y+  ++a+d+ r++++l+  k+++ +h+ G +++  ++
     KKY19119.1  36 PPLLLLHGFPQNLNIWHK--IAAPLSS-AYTVILLDLRGYGQSSKPESSPTdphphAAYSKTTMARDIVRAMEQLNYAKFYICAHDRGARVSHRLC 128
                    89****************..******9.*********************99*****9*************************************** PP

                    HHHGGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH..........HCHHHCCHHHHHHH CS
  Abhydrolase_1  92 aeyperVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkf..........pdkskrfpssgsdn 177
                     +yp++V + ++l+ +++  ++++++ + a  +  +f  + ++ a+ p+ ++l+++ a+le +      + +           ++  ++ +s+ +n
     KKY19119.1 129 VDYPDSVIKSIFLDISPTYTMYSKTDFTFARLYAHWF--FLIKAAPFPEKLILGNPRAFLEGQMFGR--HQQssssdphdvtTLFHPTALESYVQN 220
                    ***9999999999995666666666666666666665..5556666666666666666666653322..222345555555555555555555555 PP

                    CHHHHHHHHHHHHH..HHHCCHHHHHHHHHCTHHHHSEEEEEEE CS
  Abhydrolase_1 178 asslatgalksieq..wpttdsaklllrlrelknvlaptlvisg 219
                     ss+a +++ + ++  ++t d++   +++++++++++p  v++g
     KKY19119.1 221 LSSPAGVHAMCEDYraAATIDMDEAKRDIDQGRKIKCPLRVLWG 264
                    55555555555443214455555555555555666666666665 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   1.5e-15   6.5e-12       1     218 [.      38     309 ..      38     311 .. 0.59

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 1.5e-15
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTST......S-GGCS--HHH......CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHH CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhG......rsdpppldled......ladlaalldelaagggpvvlvGHSlGGalalaaap 84 
                    +lllHG++ +  +W+   +aa l++ ++v+ +Dl+G+G      +s+++p+ +++      ++d++++ + l  ++ ++++ +H+ G+ ++ +   
     KKY19119.1  38 LLLLHGFPQNLNIWH--KIAAPLSSAYTVILLDLRGYGqsskpeSSPTDPHPHAAyskttmARDIVRAMEQL--NYAKFYICAHDRGARVSHR--- 126
                    79******9999999..8888889999***********8886663344444443333355557777777777..5******************... PP

                    CC........EEEEES-..........----TTT......S----TTHHHHHHTT-CCCCHCCH..............S-HSCCCCHHHC.CCCHC CS
  Abhydrolase_6  85 la......lvvgvlldppp........talpagl......laaalelllallallrllawlsre..............plprlfladeda.daawr 145
                    l+      ++ +++ld  p         ++ a+l      l  a++++++l+   ++ a+l +               +++ lf++   +  ++++
     KKY19119.1 127 LCvdypdsVIKSIFLDISPtytmysktDFTFARLyahwffLIKAAPFPEKLILGNPR-AFLEGQmfgrhqqssssdphDVTTLFHP---TaLESYV 218
                    777778876666999997777666544222222222222233333333333333333.4443223344444444332222213333...1357777 PP

                    HCCCGHHHHCCHHCHTTCCHHTT-TTGC.............EEECTT-C.......HHHHCHHCCCHSTTEEETCE...SSS-HHHHSHHHHH CS
  Abhydrolase_6 146 arlarlaallaglgllpaaawadlpvpl.............lvlggeDp.......lvprllerllaqagarlpvvlpgaGHlphleepdeva 218
                    ++l+ +a   a+++ ++aaa  d+ ++               vl+g+          v+++  +    +g+++     ++GH++ +e+ +e+ 
     KKY19119.1 219 QNLSSPAGVHAMCEDYRAAATIDMDEAKrdidqgrkikcplRVLWGKQGvvekcfdCVKDWT-DVTD-EGVEVSGRALDCGHYIPEEQGEELR 309
                    77777777777888777777777777777777777777776455655443444444222222.2222.3333324555799988887778875 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.5e-08   6.8e-05       7     117 ..      38     153 ..      34     269 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.5e-08
  Hydrolase_4   7 vvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse........gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllr 96 
                  ++l+HG+ +  +  +++a+ L  + + v+ lD rG+G+s         ++     s +++ +D+  ++e++      +++++++h  G+ ++ +++ +
   KKY19119.1  38 LLLLHGFPQNLNIWHKIAAPLSSA-YTVILLDLRGYGQSSkpessptdPHPHAAYSKTTMARDIVRAMEQLN----YAKFYICAHDRGARVSHRLCVD 130
                  789******************976.********************999888888999999999999988877....889******************* PP

  Hydrolase_4  97 ypdkvaglil..saPalkikakl 117
                  ypd+v + i+  ++P + + +k+
   KKY19119.1 131 YPDSVIKSIFldISPTYTMYSKT 153
                  ***88765552346666555554 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.9e-05     0.085      75     156 ..      27     114 ..      19     129 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.9e-05
                 EES.SSSSEEEEEEEE-TT--GGGHHHHHHHHHTT-EEEEEE-TTTS..SSB-SSCCSS-.....SSSSTTTTTTS.TTT-HHHHHHH CS
        AXE1  75 lPkekeeklPavvefhGYegsrgeihdllnyaaaGyavvvmdvRGqggesedkvgskgnk.....akGfiirGlld.keklyyrrvfl 156
                  P+++    P ++  hG+ ++ + +h++    ++ y+v+ +d RG g +s+ ++++++++     +k  + r ++   e+l y + ++
  KKY19119.1  27 SPTNTITDRPPLLLLHGFPQNLNIWHKIAAPLSSAYTVILLDLRGYGQSSKPESSPTDPHphaaySKTTMARDIVRaMEQLNYAKFYI 114
                 58888888999999*******************************9966555555554431111156778888888788888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2293.90
//
Query:       KKY19120.1  [L=1629]
Description: putative dna-dependent rna polymerase ii largest [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.5e-105  352.2   0.0   7.3e-105  350.7   0.1    1.8  2  RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
   8.7e-102  340.1   0.0   1.3e-101  339.5   0.0    1.3  1  RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
    1.1e-75  253.5   0.0      2e-75  252.6   0.0    1.5  1  RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
    2.7e-62  210.0   1.6    5.3e-62  209.0   1.6    1.5  1  RNA_pol_Rpb1_6  RNA polymerase Rpb1, domain 6
    2.8e-48  163.8   0.0    6.9e-48  162.5   0.0    1.7  1  RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
    2.1e-40  137.8   3.4    2.1e-40  137.8   3.4    2.2  2  RNA_pol_Rpb1_7  RNA polymerase Rpb1, domain 7
    6.7e-36  122.5   0.1    1.5e-35  121.4   0.1    1.6  1  RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.7   0.1  2.8e-108  7.3e-105       2     312 .]      14     355 ..      13     355 .. 0.96
   2 ?   -2.8   0.0       1.2   3.1e+03     174     216 ..     439     480 ..     422     482 .. 0.73

  Alignments for each domain:
  == domain 1  score: 350.7 bits;  conditional E-value: 2.8e-108
                     E---EEEEEE--HHHHHHH-SBB--STTSTCSTSSSSBBSSSSSSSSS-SSSSSTSTTTSSTTTT-----EEEEEECEEE-HHHHHHHHHHCTTC CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1   2 kkikeiqfgiaspeeirkwSvvevtkaetieekslkPeegGllDerlgtidkdleCetCgkkkkeCeghfGhieLakPvfhigffklilkilecv 96 
                     ++i+eiqfg++ peei+++Svv+++ +et++e++++P+e+Gl+D +lgt+d++++C+tC++ ++eC+ghfGhieLa Pvfh+gf+++++kilecv
      KKY19120.1  14 RTIEEIQFGLFPPEEIKRMSVVHIEFPETMDEQRQRPREKGLNDTHLGTVDRNFKCATCEEVMSECPGHFGHIELAVPVFHYGFLNKVKKILECV 108
                     689******************************************************************************************** PP

                     ETTTTEBSS-TTSH....HHHHHHCSSSCCCCHHHHHHHHCCS-BE-.......................SSSSB-EEEEEETTEEEEEESSSST CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1  97 ckecskllldeekkkllsklkkrekleelkkrlkaieelckkinlce.......................kCgavqpkleeegeklkaalkkske 168
                     c++c+k+   ++++      +++  +++ k+r+++i++lck   +ce                       +Cg++qp+++++  +l  ++k +k 
      KKY19120.1 109 CHNCGKIKALDSEE-----YRQALSTRDPKRRFEQIWRLCKPRLICEadapedeedpiarekgqlkakhgGCGNAQPEIRKQALTLIGSWKARKG 198
                     *******9887777.....67788889999*************************************************************9998 PP

                     ........SCEEEE-HHHHHHHHHCSTHHHHHHTTSBTTTB-GGGCCECCEEE--GGGS-BEESSSS...SEEBECCCCHHHHHHHHHHHHHHHH CS
                     ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 169 ........eekeklsaekvkkllkriededvevlgfkssgsrPewliltvlPVpPpeiRPsvqldgg...rrsedDlteklrdiikrNnrLkkae 252
                              e++ ++++++++++++i+ded++ lg++ +++rPew+iltvlPVpPp +RPs+++dg+   +rsedD+t kl+di+++N+++++ +
      KKY19120.1 199 deeeedapPERKPITPQQALNIFRNISDEDLRTLGLSVENARPEWMILTVLPVPPPPVRPSISMDGTaqgNRSEDDMTFKLSDILRANQNVRRVQ 293
                     8899999888899****************************************************9876789*********************** PP

                     HSSSSSTCHHHHHHHHHHHHHHCC-TTSSSSSE..EBSTTSSS--THHHHHTSSSSCCCCCT CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 253 eegapeliieeekelLQehvatlfdneisglkp..atqkskrplkslsqrLkGKeGrfRgnL 312
                     +eg pe++++e+++lLQ hvat++dn+i+gl+   a++ks+rplks+++rLkGK Gr+R+nL
      KKY19120.1 294 QEGSPEHVLNEHVSLLQWHVATYMDNDIAGLSDmkAQHKSGRPLKSIRARLKGKDGRLRQNL 355
                     *****************************997544899***********************9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.2
                     E-HHHHHHHHHCSTHHHHHHTTSBTTTB-GGGCCECCEEE--G CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 174 lsaekvkkllkriededvevlgfkssgsrPewliltvlPVpPp 216
                     ++ +   k+ ++i+d dv + + ++ + + e+++ +++ V+P 
      KKY19120.1 439 VTLQYGWKVERHIQDGDVILFNRQP-SLHKESMMAHRVRVMPY 480
                     5555666788999988887777666.56779999999999996 PP

>> RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.5   0.0  5.2e-105  1.3e-101       1     266 [.     824    1421 ..     824    1422 .. 0.99

  Alignments for each domain:
  == domain 1  score: 339.5 bits;  conditional E-value: 5.2e-105
                      B--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEETTSEEEETTS-EEESSGGGTS........................... CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................... RF
  RNA_pol_Rpb1_5    1 GLkvkefffhtmggReGLiDtAvkTaesGYlqRrlvkaledvvvkyddtvrnsggeivqflygedg........................... 66  
                      GL+++efffh+m+gReGLiDtAvkTae+GY+qRrlvkale+++vkyd+tvr+s g+i qflygedg                           
      KKY19120.1  824 GLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEELTVKYDGTVRDSRGNIAQFLYGEDGldgahienqkmdfvavsdkkfdkmfkv 916 
                      9******************************************************************************************** PP

                      ............................................................................................. CS
                      ............................................................................................. RF
  RNA_pol_Rpb1_5   67 ............................................................................................. 66  
                                                                                                                   
      KKY19120.1  917 dlmgdkleflpdrldlaseihgdpmvqqlfdeeyevlqkdrqfvrkvldqteintsrqlplnvqriltqakttfkikntnssdldpsyaipki 1009
                      ********************************************************************************************* PP

                      ..................................................................B--TT-BHHHHHHHHHHHHHHCCCSST CS
                      ..................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5   67 ..................................................................lvepGeavGiiaaQSiGePgTQltlnT 93  
                                                                                          +pGe+vG++aaQSiGeP+TQ+tlnT
      KKY19120.1 1010 relldrllvvrgpdpisqeaqdnatllfkaqlrsrlafkrlvneyhlnrlafdhvvgavemrfikaHASPGEMVGVLAAQSIGEPATQMTLNT 1102
                      ********************************************************************************************* PP

                      TSSTCSSTSSSSSSHHHHHHHHTT-SS-SS-EEEEEB-SSSSSCHHHCHHHHHHHSE.................................... CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................... RF
  RNA_pol_Rpb1_5   94 FHfaGvasknvtlGvprlkeilnvskniksksltvllvdeeakelekakkvkkaiek.................................... 150 
                      FHfaGv++knvtlGvprlkeilnvsk ik++s+ ++ ++++++++  + +++++i++                                    
      KKY19120.1 1103 FHFAGVSAKNVTLGVPRLKEILNVSKDIKTPSMLIYQIPSRTTSRPAVMELRSQIQHttlrsvaesceiwydpdiqstiipedmdmvesyfii 1195
                      *********************************************9999*******9************************************ PP

                      ............................................................................................. CS
                      ............................................................................................. RF
  RNA_pol_Rpb1_5  151 ............................................................................................. 150 
                                                                                                                   
      KKY19120.1 1196 peesaaeleaqskwllritlsrpklldkglniqdvatrlkekfrrdisiifsdinaddlvirirmvrdygkeeeehreeddmqlkkllmemld 1288
                      ********************************************************************************************* PP

                      .....CBTTEEEEEEEEEEEEEEET.............EEEEEEECS--HHHHTTSTTTBETTTEEESSHHHHHHHHCHHHHHHHHHHHHHHH CS
                      .....xxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5  151 .....gikkikrilvkeaekgkeee.............kelvletegvnlsevlkveevvdageilsndiaeileilgieaarkallkeiqev 225 
                           g+++i+r+++ ++++  e+e             +e+vlet g++ls+vl +++ vd+++++sn++ ei+e++gieaar+a+l+e+++v
      KKY19120.1 1289 rvsfkGVPGISRAFIDSKTRFVEKEdgslhmkkddpecQEWVLETTGTALSKVLAIPG-VDTTRTYSNKFTEIFEVFGIEAARAAILRELTKV 1380
                      *****9999***999999977777779999999*************************.********************************** PP

                      HHHTTS---HHHHHHHHHHHTTTSS---SSTTCHCCSSSHH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5  226 ykvqgvsvndrHlelivdqmtkkgeivavnrsGinkaelsa 266 
                      ++++g++vn rHl++++d+mt +g+i+av+r+Gink++++a
      KKY19120.1 1381 LAFDGSYVNARHLAILCDIMTARGYIMAVTRHGINKSDTGA 1421
                      ************************************99875 PP

>> RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.6   0.0     8e-79     2e-75       1     166 []     357     522 ..     357     522 .. 0.99

  Alignments for each domain:
  == domain 1  score: 252.6 bits;  conditional E-value: 8e-79
                     SEEESSEEEEEEEEESSS-TTEEEEEHHHHTTSEEEEE-STTTHHHHHHHHHHTTTSSSSEEEEESTTSSEEETTTT-SCHHCCTTTTSEEEEE- CS
  RNA_pol_Rpb1_2   1 GkrvdysaRsvispdpnlkldevgvPisvakkltvpeivtelnikklrklvengpevyPgasyvkredgsekklkakkrklakelekgdiverhv 95 
                     Gkrvd+saR+vi++dpnl+ldevgvP ++ak+lt+pe+vt++ni+kl+ lv+ngp+++Pga+yv+r++g++ +l+++k++   +l++g++verh+
      KKY19120.1 357 GKRVDFSARTVITGDPNLSLDEVGVPRTIAKTLTFPETVTPFNIDKLKVLVQNGPTEHPGARYVIRDTGERIDLRHNKKTGGVTLQYGWKVERHI 451
                     9********************************************************************************************** PP

                     -TTSEEEEE-SSTTSGGGEEEEEEEEESSSSEEEEGGGHCCCT--SSS-EEEEE--SSHHHHHHHHHCSBT CS
  RNA_pol_Rpb1_2  96 kdgdvvllNRqPsLhklsimahrvkvlekktlrlnlsvttayNaDFDGDemnlhlpqseearaEaeelllv 166
                     +dgdv+l+NRqPsLhk s+mahrv+v++++t+rlnlsvt++yNaDFDGDemnlh+pqs+e+r+E++++++v
      KKY19120.1 452 QDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTAPYNADFDGDEMNLHVPQSQESRSELANICMV 522
                     ********************************************************************986 PP

>> RNA_pol_Rpb1_6  RNA polymerase Rpb1, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.0   1.6   2.1e-65   5.3e-62       1     191 []     890    1075 ..     890    1075 .. 0.96

  Alignments for each domain:
  == domain 1  score: 209.0 bits;  conditional E-value: 2.1e-65
                      B-GGGEEEEE-TTSSS-HHHHHHHH---TTSSSSS--TTTSSSHH..HHTT-TTHHHHHHHHHHHHHHHHHHHHHTT-T..T---EEE..EES CS
  RNA_pol_Rpb1_6    1 ldgafiEkQkidllklsdekfekkYkldlddekkselkelleeevveeiredaelqelldeEyeqLkedRellrkeifpdeekdekvklqLPv 93  
                      ldga+iE+Qk+d + +sd+kf+k++k+dl+ +k + l++ l+ +   ei++d+++q+l+deEye L++dR+++rk++ +    + +++ qLP+
      KKY19120.1  890 LDGAHIENQKMDFVAVSDKKFDKMFKVDLMGDKLEFLPDRLDLAS--EIHGDPMVQQLFDEEYEVLQKDRQFVRKVLDQ---TEINTSRQLPL 977 
                      8*****************************999999999998888..****************************7555...46555679*** PP

                      -HHHHHHHHHHHTT--SSS-B---HHHHHHHHHHHHTT--SS-SSSHHHHHHHHHTTTHHHHHHHHTS-HHHHHHTS---HHHHHHHHHHHHH CS
  RNA_pol_Rpb1_6   94 NikRlienaqkefkidkrkesdlspveviekvkelldklvvvrgddklskeaqenatllfkillrstLasKrvleeyrLskeaFdwllgeies 186 
                      N++R++ +a+++fki+++++sdl+p + i+k++elld+l+vvrg d++s+eaq+natllfk++lrs+La+Kr+++ey+L++ aFd+++g +e 
      KKY19120.1  978 NVQRILTQAKTTFKIKNTNSSDLDPSYAIPKIRELLDRLLVVRGPDPISQEAQDNATLLFKAQLRSRLAFKRLVNEYHLNRLAFDHVVGAVEM 1070
                      ********************************************************************************************* PP

                      HHHHH CS
  RNA_pol_Rpb1_6  187 rFkka 191 
                      rF ka
      KKY19120.1 1071 RFIKA 1075
                      **886 PP

>> RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.5   0.0   2.7e-51   6.9e-48       1     157 []     525     686 ..     525     686 .. 0.97

  Alignments for each domain:
  == domain 1  score: 162.5 bits;  conditional E-value: 2.7e-51
                     CSEETTTTEESSS--THHHHHHHHHSSTTEEEEHHHHHHHHHHSSSCCSSSSSSSSSBESSSEBEEHHHHHHCCCHCCCCEEEE.SSSS...... CS
  RNA_pol_Rpb1_3   1 nilspqsgkPvigivQDsllGvyllTkedvfidreeaqqllykgvgsdsktvtlrpailkpkelwtgkqtfsrilpneinyerk.neek...... 88 
                     ni+spq + P++gi+QD+llG+y++ ++dv++++e++++++ + +++d   v ++pailkp++ wtgkq++s++lp  +n+ r+ +e++      
      KKY19120.1 525 NIVSPQRNSPLMGIIQDTLLGIYKICRRDVMLSKEDVMNVMLWLDDWD--GVIPQPAILKPRPRWTGKQIISMVLPAALNLARFdKEKEdswypa 617
                     9*******************************************9998..569*******************************7444479**** PP

                     .STSEEECSSEEEES--SHHHHSSSSTTSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCEB-TGGGG CS
  RNA_pol_Rpb1_3  89 .dgkvlikngelikGvidkkvvgkksqgslihvlakeygiketvrfldslqrlgfkyllqsgftigigDt 157
                      dg+ li +gel+ G+  kk+vg +s ++++h++++e+g++++ +f+++ qr+++++ll++gf+igigDt
      KKY19120.1 618 nDGNLLISDGELMFGIFNKKAVG-ASANGVVHTIFNEFGPEAALKFFNNAQRVVCYWLLHNGFSIGIGDT 686
                     ***********************.9********************************************7 PP

>> RNA_pol_Rpb1_7  RNA polymerase Rpb1, domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.86   2.2e+03      21      45 ..     951     973 ..     940     993 .. 0.70
   2 !  137.8   3.4   8.2e-44   2.1e-40       1     134 [.    1160    1292 ..    1160    1293 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.86
                     -SSGGGGHHHHTTS----------- CS
  RNA_pol_Rpb1_7  21 tvieeDrefveeyyelpdedveksr 45 
                      v+++Dr+fv++ ++ ++ ++  sr
      KKY19120.1 951 EVLQKDRQFVRKVLDQTEINT--SR 973
                     588999999999887666554..44 PP

  == domain 2  score: 137.8 bits;  conditional E-value: 8.2e-44
                      EEGGGTEEEEEEEB---TTS-SSGGGGHHHHTTS---------.----SBEEEEEE-SHHHHHTT--HHHHHHHHHHHHTTTEEEEE--TTSS CS
  RNA_pol_Rpb1_7    1 ttLrkvtaateiyYDPdprntvieeDrefveeyyelpdedvek.srlspWlLRieLdrkkmtdkkltmeevaekikeefkndlkvifsddnae 92  
                      ttLr+v++++ei+YDPd+++t+i eD ++ve+y+ +p+e++ + +++s+WlLRi+L+r k++dk l++++va+++ke+f++d+++ifsd na+
      KKY19120.1 1160 TTLRSVAESCEIWYDPDIQSTIIPEDMDMVESYFIIPEESAAElEAQSKWLLRITLSRPKLLDKGLNIQDVATRLKEKFRRDISIIFSDINAD 1252
                      9*************************************999966************************************************* PP

                      SEEEEEEE------------..--HHHHTTHHHHHHHSS-EE CS
  RNA_pol_Rpb1_7   93 klvlririvkeekekeeeqedkaeddkfLkklesnllssltL 134 
                      +lv+rir+v++  +  ee+e+++edd  Lkkl  ++l+++++
      KKY19120.1 1253 DLVIRIRMVRDYGK--EEEEHREEDDMQLKKLLMEMLDRVSF 1292
                      *********97544..55555689**************9976 PP

>> RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4   0.1   5.8e-39   1.5e-35       3     108 .]     712     817 ..     710     817 .. 0.96

  Alignments for each domain:
  == domain 1  score: 121.4 bits;  conditional E-value: 5.8e-39
                     HHCTHTCCHHHTTHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSHHHHHHHCTSSS-HHHHHHHHTB-EEEEBTTBSS--SSTSCSSTTSSS CS
  RNA_pol_Rpb1_4   3 eaerygkledlpgksleelfeakinkilnkardkagkiaskslaasNsiliMvksGaKGsiinisqiagclGqqnvegkripkgfsgrtlphfkk 97 
                     ++ +++ le++pg++++e+fe+k++ +ln+ard+ag++ ++sl++ N+ ++M+++G+KGs+inisq+++++Gqq+vegkrip+gf++rtlphf k
      KKY19120.1 712 YKAQNEDLEPAPGMNVRETFESKVSAALNNARDEAGSVTEDSLKDLNNAIQMARAGSKGSTINISQMTALVGQQSVEGKRIPFGFKYRTLPHFAK 806
                     55666899************************************66************************************************* PP

                     SESSTTTSSEE CS
  RNA_pol_Rpb1_4  98 idespesrGFv 108
                     +d+s++s+GFv
      KKY19120.1 807 DDYSAQSKGFV 817
                     **********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1629 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      640  (0.0356964); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.03u 0.35s 00:00:01.38 Elapsed: 00:00:00.53
# Mc/sec: 9333.82
//
Query:       KKY19121.1  [L=507]
Description: putative set1 complex component swd1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.8e-13   48.4   8.5    0.00017   22.3   0.3    5.3  6  WD40          WD domain, G-beta repeat
    1.1e-11   44.9   3.0       0.05   13.9   0.0    5.3  6  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    8.3e-07   29.1   0.2     0.0016   18.4   0.0    2.6  3  eIF2A         Eukaryotic translation initiation factor eIF2A
      0.008   14.7   0.2      0.045   12.3   0.2    2.2  2  Cytochrom_D1  Cytochrome D1 heme domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0     3e-07    0.0014       8      38 .]      60      88 ..      53      88 .. 0.89
   2 !   22.3   0.3   3.8e-08   0.00017       8      38 .]      99     130 ..      94     130 .. 0.93
   3 ?   -1.9   0.0       1.7   7.8e+03      14      35 ..     207     223 ..     198     225 .. 0.68
   4 ?   -0.2   0.0      0.49   2.2e+03      13      35 ..     243     265 ..     232     265 .. 0.67
   5 ?   -1.1   0.0      0.93   4.2e+03      15      37 ..     319     342 ..     299     343 .. 0.51
   6 !    6.4   0.0    0.0039        18      14      38 .]     360     386 ..     347     386 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3e-07
                ESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  8 tGHssvtslafspdgawlasGsdDgtvriWd 38
                +GH   t l+f++ g++lasG  Dg+v +Wd
  KKY19121.1 60 SGH--ATTLRFNRKGDYLASGRVDGKVVVWD 88
                399..89**************99*******9 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 3.8e-08
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  GH   +tsl++s+ g++l+s+s D  + +Wd
  KKY19121.1  99 HGHvAQITSLSWSRTGRYLLSASQDWRCILWD 130
                 699888*************************9 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.7
                 EEEEEETTSSEEEEEETTSEEE CS
        WD40  14 tslafspdgawlasGsdDgtvr 35 
                 t+l     g+ ++sG+ +g + 
  KKY19121.1 207 TAL-----GNHILSGTSKGFIN 223
                 344.....88888995587775 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.49
                 EEEEEEETTSSE.EEEEETTSEEE CS
        WD40  13 vtslafspdgaw.lasGsdDgtvr 35 
                 ++sl+ s++g+  l+ +s D+ +r
  KKY19121.1 243 ISSLRLSSNGRDlLVNSS-DRVIR 265
                 778885555544166778.99997 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 0.93
                 EEEEETTSSEEEEE.ETTSEEEEE CS
        WD40  15 slafspdgawlasG.sdDgtvriW 37 
                 +++  ++ ++++++  + + ++iW
  KKY19121.1 319 AFSGTSNADYVTAAtYMRKDIYIW 342
                 222455555565442346666666 PP

  == domain 6  score: 6.4 bits;  conditional E-value: 0.0039
                 EEEEEETTSSEE.EEEE.TTSEEEEEE CS
        WD40  14 tslafspdgawl.asGs.dDgtvriWd 38 
                 +s+ ++p+g+ l a++s d g+++iW+
  KKY19121.1 360 SSVEWHPNGKPLlAACSvDTGSIYIWS 386
                 6889999999972566668*******5 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00015      0.66      37      75 ..      59      97 ..      44     101 .. 0.86
   2 !   13.9   0.0   1.1e-05      0.05      37      80 ..     101     144 ..      94     153 .. 0.86
   3 !    5.9   0.0    0.0035        16      46      87 ..     206     246 ..     193     251 .. 0.81
   4 ?    3.6   0.0     0.018        82      14      59 ..     217     261 ..     213     272 .. 0.56
   5 !   10.7   0.0   0.00011      0.51      36      71 ..     354     391 ..     307     403 .. 0.80
   6 ?   -3.4   0.0       2.8   1.2e+04      14      25 ..     431     442 ..     429     445 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00015
  ANAPC4_WD40 37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75
                 ++++ + L+++ +g  La +  dg+v + d+e+  v  +
   KKY19121.1 59 RSGHATTLRFNRKGDYLASGRVDGKVVVWDMETMGVAMK 97
                 5678899************************99877655 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.1e-05
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  +  +++sL+W+  g+ L  a +d ++ l d  +g  ++++  ++
   KKY19121.1 101 HVAQITSLSWSRTGRYLLSASQDWRCILWDLADGSQIRHVIFTA 144
                  5679******************************9999987665 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0035
  ANAPC4_WD40  46 WkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                  +   g+ +  ++s+g +++++ +s+++v++ + ++   +++l
   KKY19121.1 206 FTALGNHILSGTSKGFINIIETQSARIVQATKLSTG-FISSL 246
                  566799999********************9998877.47666 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.018
  ANAPC4_WD40  14 tedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysd 59 
                  t++g +++  ++  r++++ ++ + + ++sL+ + +g+ L v  sd
   KKY19121.1 217 TSKGFINIIETQSARIVQA-TKLSTGFISSLRLSSNGRDLLVNSSD 261
                  3444444444555555555.45555556666666666666666665 PP

  == domain 5  score: 10.7 bits;  conditional E-value: 0.00011
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavays..dgevrlldaesgk 71 
                  ++ +e +s++W+p+gk L  a+s   g++ + ++e ++
   KKY19121.1 354 ENREELSSVEWHPNGKPLLAACSvdTGSIYIWSVEPQQ 391
                  7789999*********9988876336889999888665 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 2.8
  ANAPC4_WD40  14 tedgellvfRln 25 
                  +ed+e++v R++
   KKY19121.1 431 QEDEEVNVIRIE 442
                  689999999976 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.6e-07    0.0016      97     166 ..      57     125 ..      50     128 .. 0.85
   2 ?   -3.1   0.0       1.3     6e+03      99     120 ..     197     218 ..     190     241 .. 0.48
   3 !    7.9   0.0   0.00058       2.6      32     163 ..     330     376 ..     294     400 .. 0.52

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.6e-07
                 EEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE..-TT--EEEE-TTSSEEEEEE-TTT CS
       eIF2A  97 kleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakae..aanatlvewspdgryvlTattapr 166
                 +l++ ++ t+ f+ kg +++    g + G++ +wd++++    k++   a+ t++ ws +gry+l a+  +r
  KKY19121.1  57 ELRSGHATTLRFNRKGDYLAS---GRVDGKVVVWDMETMGVAMKMHghVAQITSLSWSRTGRYLLSASQDWR 125
                 677888999*********987...5789*********99888877522567799***************999 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.3
                 EEES--EEEE-TTSSEEEEE-T CS
       eIF2A  99 eeqkrNtiffspkgklvllaGf 120
                 ++q+    +f + g+ +l +  
  KKY19121.1 197 SKQATTVAIFTALGNHILSGTS 218
                 4444444444444444444332 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.00058
                 -CEEEEEEEEEESSSTT--EEECCEESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECSCEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEE CS
       eIF2A  32 nksyygetelyliklkkkksevvelkkegpihdvaWspkskefaviyGkmpakvslfdlkvkviskleeqkrNtiffspkgklvllaGfgnlaGeleiw 130
                 ++ +                                            +                                          ++ ++ iw
  KKY19121.1 330 TAAT--------------------------------------------Y------------------------------------------MRKDIYIW 342
                 2222............................................3..........................................33344444 PP

                 ETTTTEEEEEEE-.TT--EEEE-TTSSEEEEEE- CS
       eIF2A 131 dvkkkkkiakaea.anatlvewspdgryvlTatt 163
                 +++k + ++ +e+ ++ ++vew+p+g+ +l a +
  KKY19121.1 343 EREKGSLVKILENrEELSSVEWHPNGKPLLAACS 376
                 4444444433332123344444444444444433 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.023     1e+02     314     348 ..      61      92 ..      30      97 .. 0.77
   2 !   12.3   0.2     1e-05     0.045      12     195 ..      79     263 ..      75     289 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.023
                   T--EEEEEE-TTSSEEEEEEE--SSEEEEEETTTT CS
  Cytochrom_D1 314 glkvvhvEfnkdGdevwlSvwdgkdalvvyDdktl 348
                   g +++   fn++Gd++     dgk  +vv+D +t+
    KKY19121.1  61 G-HATTLRFNRKGDYLASGRVDGK--VVVWDMETM 92 
                   3.478889******9988888888..*****9886 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 1e-05
                   GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE-SSEEEEEEE-.-TTSEEEEEEEETTEEEEEETT CS
  Cytochrom_D1  12 rdagkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaevkiGlnarsvavS.qddryvivgnYlPgqlvildae 107
                   r +gkv + d ++     +++++ a  +s   ++ gRy++ ++ D +  l DL     +++v+        +   ++  + +v+ Y+   + +  +e
    KKY19121.1  79 RVDGKVVVWDMETMGVAMKMHGHVAQITSLSWSRTGRYLLSASQDWRCILWDLADGSQIRHVIFTAPCYIAELHpYNHFLFVVSLYEADPYLVDISE 175
                   66899**********************************************************9999999998878888999999**9999999999 PP

                   T--EEEEEE--EE-SSS.....S---EEEEEE-SSSSEEEEEETTTTEEEEEE-SSSSSEEEEEEE--SSEEEEEE-TTSSEEEEEEGGGTEE CS
  Cytochrom_D1 108 tLelvkvisargltvde.....resRVaaivasperpefvvnlkdtgeillvdysdlknlktrtieaakflhDggldpdkRYflaaanaedkv 195
                   ++    +++++  ++d+     +++  +ai ++ + +  +++    g i +++ +  + ++++++    f+    l++++R +l+  n++d+v
    KKY19121.1 176 DVAKKTKLPSQTGDDDDiskasKQATTVAIFTALGNH--ILSGTSKGFINIIETQSARIVQATKLS-TGFISSLRLSSNGRDLLV--NSSDRV 263
                   9999999999988888889777677778888888877..888777777777776666666666554.457888888888888887..777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3191.17
//
Query:       KKY19122.1  [L=897]
Description: putative histidinol dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.8e-157  524.5   0.8   3.2e-157  523.7   0.8    1.4  1  Histidinol_dh  Histidinol dehydrogenase
    1.6e-23   82.3   0.3    3.4e-23   81.3   0.3    1.6  1  PRA-CH         Phosphoribosyl-AMP cyclohydrolase
    4.1e-15   56.0   1.5    8.2e-15   55.0   0.1    2.1  2  PRA-PH         Phosphoribosyl-ATP pyrophosphohydrolase


Domain annotation for each model (and alignments):
>> Histidinol_dh  Histidinol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  523.7   0.8  5.4e-161  3.2e-157       5     409 .]     480     889 ..     475     889 .. 0.95

  Alignments for each domain:
  == domain 1  score: 523.7 bits;  conditional E-value: 5.4e-161
                    ----HHHHHHHHHHHHHHHHHCHHHHHHHHHHCCSSSSGGCCEE-HHHHHHHHHCS-HHHHHHHHHHHHHHHHHHHCC----EEEEEECTTEEEEE CS
  Histidinol_dh   5 eedseeveetvkeiledvreeGdealleytekFDkvkkleslrvseeeieealekldeelkealeeaaenirkfheaqkeseeevketepgvvlgq 100
                    + +++ ++  v++i++dvre+Gd+a+l+yt+kF+k+++l +  v ++ +   l +l++e+ ++++++++ni kfh+aqk++++  +et+pgvv+++
     KKY19122.1 480 QRSTDMIMGMVNPIIKDVRENGDSAVLKYTHKFEKATSL-KSPVLHAPFPPELMQLPQETIDSINVSYDNILKFHSAQKDEKTLQVETMPGVVCSR 574
                    334556888*************************77533.3557777899999**************************9878788********** PP

                    EEEE-SEEEEE---STT--CHHHHHHHHHHHHHT-SEEEEEE-SS.GG.--HHHHHHHHHCT-SEEEE--HHHHHHHHHH--SSS---SEEE---S CS
  Histidinol_dh 101 kvrpiervGlYvPgGkaaypStvlmnavpAkvAgvkeivvvtPpq.dgkvnpavlaaaklagvdeiykvGGaqAiaalAyGtesipkvdkivGPGn 195
                      rpie+vGlY+PgG+a++pSt+lm++vpA +Ag+k+iv+++Pp+ dg+v+p+++++a+++g+++i+ +GGaqA+aa+AyGt+si+kvdki+GPGn
     KKY19122.1 575 FSRPIEKVGLYIPGGTAVLPSTALMLGVPAMCAGCKNIVMASPPRsDGTVTPEIVYIAHKIGAESIVLAGGAQAVAAMAYGTQSINKVDKILGPGN 670
                    ************************************************************************************************ PP

                    HHHHHHHHHHCTT....BEES----S-EEEEEE-TTS-HHHHHHHHHHHHTT-TT-EEEEE..ES-HHHHHHHHHHHHHHHCC-TTHHHHHHHHCC CS
  Histidinol_dh 196 iyVaaAKrlvsge....vgiDmiaGPsEvlviaDetadpefvAaDLlsqaEHdedaqavlv..ttseelaeaveeevekqleelprkeiaekslek 285
                    ++V+aAK++vs++    v+iDm+aGPsEvlviaD+ta+p+fvA+DLlsqaEH++d+q+vl+    s+e + a+e+e++kq+++lpr +i++ ++++
     KKY19122.1 671 QFVTAAKMVVSNDtsasVSIDMPAGPSEVLVIADKTANPAFVASDLLSQAEHGPDSQVVLIavDLSDEQLLAIEDELHKQAHALPRVDIVRGAIAH 766
                    **********5444566*******************************************97678999**************************** PP

                    H-EEEE-SSHHHHHHHHHHH--SEEEEESTTHHHHGGG--S-SEEEESTT--HHHHHHTSSS------TTGGGT---S-GGGGEEEEEEEEE-HHH CS
  Histidinol_dh 286 qsaiilvedleeaielaneyApEHlelqvedpeellekiknaGaiflGeyspeslgDYaaGtnhvLPTsgtArfssglsvedFlkkisvqelskea 381
                     s+ i v dl++a+ ++n yApEHl+lq++d+ ++++ ++naG++f+G+++pes+gDY aG nh LPT+g+Ar++sg+s+ +F+k+i+  +l++++
     KKY19122.1 767 -SVSINVPDLATAMYWSNYYAPEHLILQIADAVSAVPMVQNAGSVFIGAWTPESVGDYSAGVNHSLPTYGYARQYSGVSLGSFMKHITSSNLTEDG 861
                    .*********************************************************************************************** PP

                    HHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
  Histidinol_dh 382 lkelaeavetlAeaEgLeaHaeavkvRl 409
                    l++++ av++lAe+EgL+aH +av++Rl
     KKY19122.1 862 LRNVGGAVMRLAEVEGLDAHGRAVSIRL 889
                    **************************96 PP

>> PRA-CH  Phosphoribosyl-AMP cyclohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.3   5.7e-27   3.4e-23       2      73 ..     235     306 ..     234     307 .. 0.96

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 5.7e-27
                 EEEE-HHHHHHHHHHSB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS.-SSTTSBSSS- CS
      PRA-CH   2 laymnkealektletgkavyySrsrkklWkKGetSgnvqkvkeirlDcDqDalllkveqkg.aaCHtgkesCF 73 
                 l++++ke++ ++l+tg+ vy+Sr+r  lW+KG++Sg++q++ +i++DcD+D++l+kv+q g  +CH g++sC+
  KKY19122.1 235 LVWSSKESIGEALKTGTGVYQSRKR-GLWYKGQSSGDTQELINISFDCDSDCMLFKVRQLGrGFCHKGTTSCW 306
                 68***********************.9*********************************856*********9 PP

>> PRA-PH  Phosphoribosyl-ATP pyrophosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.1   1.4e-18   8.2e-15       2      79 ..     313     391 ..     312     394 .. 0.95
   2 ?   -1.6   0.2      0.65   3.9e+03      29      51 ..     428     451 ..     413     455 .. 0.69

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 1.4e-18
                 HHHHHHCT----SS----.-HHHHHH...HHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHCT--CHHHHHHH CS
      PRA-PH   2 kefhrligerkpetPeas.taelasl...raaligEEavElleaasegdlaeladelaDllYvtygllvllGidldavfeev 79 
                  +++++++ rk+++P +s ta+l+++   ++a+i EEa+El+ea    +++e+a+e+aDl+Y+++  +v+ G++l ++  ++
  KKY19122.1 313 SRLEKTLQSRKKDAPAGSyTARLFNDpklIQAKIREEADELCEAK---TKEEIASEAADLFYFALTRCVAVGVSLADIESNL 391
                 5799*****************************************...8**************************9998776 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.65
                 HHHHHHHHHHHHHT-.SCHHHHHH CS
      PRA-PH  29 aligEEavElleaas.egdlaela 51 
                 a ++EE++E  +  + ++d a+++
  KKY19122.1 428 AEKKEEIKEAAAVPKsKDDDAGII 451
                 557999999887544244555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (897 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.51
# Mc/sec: 5321.69
//
Query:       KKY19123.1  [L=251]
Description: putative u3 small nucleolar rna-associated protein utp11 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-37  129.1  10.5    4.8e-37  128.2   3.6    2.0  2  Utp11     Utp11 protein


Domain annotation for each model (and alignments):
>> Utp11  Utp11 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.5   0.00059        11       1      11 [.      10      20 ..      10      22 .. 0.90
   2 !  128.2   3.6   2.7e-41   4.8e-37      31     245 .]      22     251 .]      20     251 .] 0.79

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.00059
       Utp11  1 rrnHkERsQpa 11
                rrnHkERsQ++
  KKY19123.1 10 RRNHKERSQVS 20
                9********86 PP

  == domain 2  score: 128.2 bits;  conditional E-value: 2.7e-41
       Utp11  31 dyhkKqaklkaLreKAaerNpDEFyfgMikskt.kkgvhvekekdrgnealsedqvkllktqDlnYvrtkraierkkiekleeelhlleaeakse.ake 127
                 +y+ K++kl  L++KA+erNpDEF fgM++++  k+g+h   ++   ++ ls+d+vkllktqD++Y+rt  ++ r+++e+le+e+++ ea+++   ++ 
  KKY19123.1  22 HYNLKKKKLSILSQKASERNPDEFAFGMLSAEKsKQGKHG--QN-SLENRLSHDTVKLLKTQDQGYLRTVGQKSRRELEELEREINVAEAMERIGdER- 116
                 799**************************8877699*998..34.45667************************************999777655333. PP

       Utp11 128 s................kkkkknkhivFvd.seeeakefdaaekfetepelleeeee.........eekeerkenrkkvkqk..ekkkeklykeLkarl 198
                 +                ++   nk+++F+d s+   k++ + ++ ++ p+    +++         +  +++ +n+++++ k  ++ +e + ++L+a +
  KKY19123.1 117 AngddpgtkdsgertkiSSPPPNKKTIFLDpSSPPIKSIPNPST-TSPPSRSA-SSTppppqstskT--SKNLANQRRTR-KlrARLREVRASKLQALK 210
                 3699***********995556799******55555666665553.33333333.2335788777431..22223333322.23499************* PP

       Utp11 199 erekqLkkaeqelelqralmkkgakkkvkkgkkkkaavykwkkeRkr 245
                 +r+k++ ka++elelqra m     +   +g +k++++++ + eRkr
  KKY19123.1 211 QRQKEILKAAEELELQRARM-----SGAIGGVNKDGVKFRRR-ERKR 251
                 ********************.....66778888999999998.9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1676  (0.0934798); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:00.53
# Mc/sec: 1438.02
//
Query:       KKY19124.1  [L=224]
Description: putative transcription initiation factor 31kd [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-35  120.8   0.0      4e-35  120.5   0.0    1.1  1  TFIID-31kDa  Transcription initiation factor IID, 31kD subuni


Domain annotation for each model (and alignments):
>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5   0.0   2.3e-39     4e-35      18     122 .]       1     148 [.       1     148 [. 0.99

  Alignments for each domain:
  == domain 1  score: 120.5 bits;  conditional E-value: 2.3e-39
  TFIID-31kDa  18 lgvteyeerVvlqLldfayrytssvLedAkvlaehakkke..............................vslddvrlAiqsrlekqfkepppkelLl 85 
                  +gv++y+erV+lqLldfayrytssvL+dA++l+++ ++++                              +sl  +r+Ai+sr ++qf++++pke+Ll
   KKY19124.1   1 MGVSAYQERVPLQLLDFAYRYTSSVLQDALHLQAEGYDTAdtgtggkgrgrgagaaaakdndpnaadpggISLTSLRMAIASRSQHQFQQTLPKEFLL 98 
                  89*************************************99********************************************************* PP

  TFIID-31kDa  86 elAaerNkipLpkvkek.............lgirLPperycltavnyqlk 122
                  elA++rN++ Lp   ++              g+rLP+erycl++++++lk
   KKY19124.1  99 ELASKRNAVGLPGSIRGgtrisdknegvsiGGVRLPHERYCLSGTGWSLK 148
                  *************99999***********99****************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.50
# Mc/sec: 1351.34
//
Query:       KKY19125.1  [L=509]
Description: putative glutamate decarboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-80  270.5   0.0    2.3e-80  270.1   0.0    1.1  1  Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved do
    5.3e-07   28.9   0.0    1.6e-06   27.4   0.0    1.7  2  Aminotran_5    Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.1   0.0   2.5e-84   2.3e-80       1     374 [.      47     392 ..      47     393 .. 0.95

  Alignments for each domain:
  == domain 1  score: 270.1 bits;  conditional E-value: 2.5e-84
                    TTTTGGGSCSSHHSSHH.HHHHHHHHHHCTGGGS--TTSTTBHCSSH....HHHHHHHHHHHHHT-BTSSTTTSHHHHHHHHHHHHHHHHHTT--G CS
  Pyridoxal_deC   1 PeylkrlldeaapekaesleqilediekilapgvttwhspefhkllpagnslisllgdlLadainkngftweesPaltelevvvldwlaellglpe 96 
                    Pe++++ ++ a+  + + +  ++++ + +la++vtt +++e  kl++              da  kn++++ee+P+++e+++ +++++a l ++p+
     KKY19125.1  47 PEKEMP-KEIAYRLIKD-ELLMDGNPKLNLASFVTTYMEDEAEKLMS--------------DAFSKNFIDYEEYPQTAEIQNKCVNMIARLYNAPT 126
                    677777.7777887888.7889*************************..............9*********************************9 PP

                    GGTCCT-EEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTS.HHHHHCCEEEEEETTS-HHHHHHHHHHT-EEEEE--BTTTBB-HHHHHHHHHHH CS
  Pyridoxal_deC  97 eflekegggvlqvgssestllallAartkvikemkekgkelkeaeildklvlytsdqahssvekaalvlgvklrvipldengklrgaalekaieed 192
                    ++   ++ g+ +vgsse+++la lA++++++++ k++gk+        k++++  + +++++ekaa++++v+ r++ ++++   ++ ++++a+   
     KKY19125.1 127 HDDTDNAMGTSTVGSSEAIMLATLAMKRRWQNKRKAAGKD------ASKPNIVMNAAVQVCWEKAARYFDVEERYVYCTKDR--YVIDPKEAVDLI 214
                    999989*********************************9......789******************************955..999********* PP

                    HCTT.EEEEEEEEBS-TTT-BB--HHHHHHHHHH..CT-EEEEE-TTGGGGGGSGGGGG...GGTTGGGESEEEEECCCCTS--SS-EEEEESSCC CS
  Pyridoxal_deC 193 kekGlipffvvatlGttvlgaFddlkelgdicek..ydlwlHvDAAyaGsaficpeirh...llkgieradSitvnphKlllvlldcsalivkdke 283
                    +e+  ++  ++++lGtt++g+++d+k ++d++ +  +d+++HvDAA++G  f++p++ +   +++++e + Si+v++hK++lv+ ++++++++  e
     KKY19125.1 215 DEN--TV-GICVILGTTYTGEYEDVKGINDLLIEnnIDCPIHVDAASGG--FVAPFVNPgleWDFRLEKVVSINVSGHKFGLVYPGVGWVVWRSPE 305
                    ***..55.99**********************9978999**********..********************************************* PP

                    GCHHHH-EEECCCT.TTTTTSEECCCGSSSSSG..HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTEEECS..TTBSSEEEEEE CS
  Pyridoxal_deC 284 alqqalqleaeYLehedsdvaadlgtkaiplsr..rvrilklwfvlralGveglqnqirksvelakyleklirkderfeiva..evelglVcFrl 374
                     l+++l+++++YL+       ad+  +++++s+  +++i ++++++r lG++g++  + + ++ a y++++i+k +   + +   ++l+lV+Fr+
     KKY19125.1 306 YLPDELIFHINYLG-------ADQASFTLNFSKgaSQVIGQYYQFIR-LGRRGYRSIMLNLTKTADYFASEIEKLGFIIMSQggGRGLPLVAFRI 392
                    **************.......9***********999***********.*************************9885555559999*******97 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.8e-10   1.6e-06      41     215 ..     107     303 ..      95     378 .. 0.81
   2 ?   -1.8   0.0      0.13   1.1e+03     262     288 ..     452     478 ..     448     481 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.8e-10
                  HHHHHHHHHHHHHHHHT-STGGGE.....EEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSH......GGGTHHHHHHHHHHTEEEEEEEBETTS.C CS
  Aminotran_5  41 atkaveearekvaelinaeseeei.....iftsGtteainlvalslarslkpgdeivvteaeh......hanlvpwqelakrtgakvkvipldeeg.e 126
                  ++++ +++ + +a+l+na++++++       t G++eai l+ l+++r++++++++  ++a +       a  v+w+++a+   ++ +++  +++   
   KKY19125.1 107 TAEIQNKCVNMIARLYNAPTHDDTdnamgTSTVGSSEAIMLATLAMKRRWQNKRKAAGKDASKpnivmnAAVQVCWEKAARYFDVEERYVYCTKDRyV 204
                  66777788888899999988777622222235567789999999999999999999888776522222257889**************9987765428 PP

                  BEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHT..T-EEEEE-TTTTTTS---HHHHTESE.......EEEETTT.TTSSTT-EEEEEE CS
  Aminotran_5 127 ldldelekllnektklvaithvsnvtGtiqpveeigklakkk..galvlvDaaqavghipidvkklgvDf.......lafsghK.llgPtGiGvlyvr 214
                  +d++e+ +l++e+t  +++    + tG  ++v+ i++l+ ++  ++ ++vDaa++   +p+    l+ Df       + +sghK  l  +G+G ++ r
   KKY19125.1 205 IDPKEAVDLIDENTVGICVILGTTYTGEYEDVKGINDLLIENniDCPIHVDAASGGFVAPFVNPGLEWDFrlekvvsINVSGHKfGLVYPGVGWVVWR 302
                  99***********************************998844899*********9999999999999986666655678999977888899977666 PP

                  H CS
  Aminotran_5 215 k 215
                  +
   KKY19125.1 303 S 303
                  4 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.13
                  HHHHHHHHCHHHHHHHHHHHHHHHHHH CS
  Aminotran_5 262 gaaleyleeigleaiekhekelaeyll 288
                  + a+e l++++++++ek+++  +e+++
   KKY19125.1 452 KMAIETLKKFDADQVEKYKAHIKEHAT 478
                  5799***************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 3088.70
//
Query:       KKY19126.1  [L=411]
Description: putative protein tma23 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2537  (0.141503); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.46
# Mc/sec: 2689.31
//
Query:       KKY19127.1  [L=1192]
Description: putative fad nad binding oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-53  181.1   0.0    6.6e-53  180.5   0.0    1.2  1  DAO       FAD dependent oxidoreductase
    3.9e-19   68.3   0.0    8.6e-12   44.1   0.0    2.2  2  CRT10     CRT10


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.5   0.0   7.4e-57   6.6e-53      20     351 ..     808    1169 ..     798    1170 .. 0.78

  Alignments for each domain:
  == domain 1  score: 180.5 bits;  conditional E-value: 7.4e-57
                  HTTEEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHH.HHHHHHHSSTTSEEEEEEEEEESS......................H CS
         DAO   20 rrgVtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeel.releeelgididyrrtGllslaad......................e 93  
                  ++ +tl+e+  +++sgaSg+++gll   ++ +p  s ++ ls+++++el +e+++e +  ++yr+  + +laa+                      +
  KKY19127.1  808 KHTITLIEAT-EIASGASGKAGGLLGL-WA-YP--SSIVSLSYRLHAELaKEHNGESR--WGYRQVHCGQLAAKgchldkpsketngsssaegesvS 897 
                  444*******.6666**********77.87.66..3799**********9*****977..***********97545555666666665544333221 PP

                  HHHHHHHHHHHHH....HHTTTTE..EEEEHHHHHHHSTTSTTTSEEEEETT.EEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE CS
         DAO   94 eelealdkllall....leaglda..elldaeevrelepalpgllgalfypd.tgqvdpakltaalaraaealGveilegtevtgleeedgkvwgve 183 
                       l+k+ +++    ++ag++    ++d++ v++ +         +++p+ t+qv+p+++t ++a+ a ++G++i++g  v+++++ +   +gve
  KKY19127.1  898 -----LQKRTKEAlgllKAAGIPKdlDWFDPSGVLDYDE--------MGDPSnTAQVHPYQFTTSMADLASEKGCNIIYG-SVQKINQ-GSSSSGVE 979 
                  .....3333333344446677744337999988998885........3455536**************************.*****54.53445555 PP

                  ......EECT.EEEEEEEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE............EEETTTTEEEEEETT CS
         DAO  184 ......rttp.gendaadavVnaaGawsd.llgllkeldlpispvrgqvlvlkplseklvspaailpvpe............tdddgrgvyvtprkd 260 
                        ++t+  ++ +a+ v+++aG+w++ ++        pis++r++++v++p  + +vs++ i+++              +   + ++++++r++
  KKY19127.1  980 svtytdKETQeSHTISATDVILSAGPWTKsIF---SA--APISALRAHSVVIRPS-R-PVSAYCIFTEITlpsnftgrngkpKPIKHVSPEIYARPN 1069
                  5547654444233234466********99655...44..49***********775.3.68999999998899999***99998888999999999** PP

                  SEEEEEESSE.....EETTCSSTSCSHHHHHHHHHHHHHHSGGG..CGEEEEEEEEEEE.TTS...SEEEEEEETEEEEEEEEECTTTHHHHHHHHH CS
         DAO  261 grvlvGgtad.....eesgdddpevdeedidellealrklfPql..gdvlrkwaGlrpl.pdg...lpligetpgvkglylatGhsghGltlapatG 346 
                  ++v+++g++d     +  +  + evd+ ++d+++++++ ++P+l  g+++ ++a+++p+  +g   +plig+t g +gl++a+Gh ++G++++patG
  KKY19127.1 1070 NEVYACGEGDhlvplPSLSSSV-EVDQSRCDDIIDHVSSISPELrdGEITARQACYLPQvSSGggsGPLIGPT-GIRGLLIAAGHTCWGIQNGPATG 1164
                  *********9999776666666.********************74577**********53333467******7.599******************** PP

                  HHHHH CS
         DAO  347 kllae 351 
                  kl++e
  KKY19127.1 1165 KLISE 1169
                  **987 PP

>> CRT10  CRT10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   9.6e-16   8.6e-12      39     292 ..       4     305 ..       1     310 [. 0.85
   2 !   22.1   0.0   4.3e-09   3.8e-05     598     649 ..     551     604 ..     546     643 .. 0.81

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 9.6e-16
       CRT10  39 FkNNlaviie.rsvlfiaagseieifdldklsalsktkvvlreytkpsqvkledrlistsp.nphtinflkivnflGqevLvaciddGivllwevstii 135
                 + NNl ++++  +  f+aa +++ ++     s+      +   +++p   + +d+     p  p+ in l ++ +  +e+Lv+  d+G+v  + ++ti 
  KKY19127.1   4 WRNNLTALSQrYNLYFVAAAEQVHVYVPQFYSQTL--GNIPSLILNPP-ATNPDAVGYIDPdRPMGINHLIVDDLGRNEILVLTTDSGNVAAYHTNTIH 99 
                 68999999995556688999999998776666632..23444555555.56799*9999**************************************** PP

       CRT10 136 kefkkf.ssdidegtsrikikPdlklrleasvWslDvidydsislialsdns..........qgitllaydkd....kerfyiekeiq........... 208
                 + ++   ++d+++    i i P ++  + +s+W++ v   ++  lia+s n             it++a+       +  + +e+              
  KKY19127.1 100 RAVRRQaEEDAQQTADDIGIRPFFTHWVYESAWGIAVH--KMARLIAISANVplrsngsentGDITVFAFALTscalD-ETSSED--Hsdinnelsgvr 193
                 ***98857777776777******************965..9********999999999998788*****998654422.222222..135579999*** PP

       CRT10 209 ..............................tshnvPcvsfvknednseghitvayasisgevvtlkfkfkeedgplerlkiessildtrfllgedcWTv 277
                                                 +n+P + f +++ + +g + +  ++i g+  + ++ ++ + +  +  +++     ++ l ge  W v
  KKY19127.1 194 fedwvefdedeellheltvrarnfkitlsdHRANIPNIAFANSHCDRAGKL-LFSTDIHGDTKIWNV-WERRVLRSYDFSEDGGKGRSHELEGERGWSV 290
                 ****************************99999*************99885.66799*******999.89998989999******************** PP

       CRT10 278 tpiskkdFkevdsle 292
                 +p+++  F   ds+ 
  KKY19127.1 291 IPLDPSSFRTADSIT 305
                 ********9998875 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 4.3e-09
       CRT10 598 snRisivchIkeLsciivasqlGLisllRLteyr..GiysfRqEyilpweridp 649
                 ++R++++ +++eL + ++asq G + ++ Lt+ +  G  +fR  + +p+  +  
  KKY19127.1 551 MDRLNMSAYLPELGVVVAASQTGKVAIITLTKRAetGCLGFRVDWTIPFFDQIR 604
                 59*****************************97444************654443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.47
# Mc/sec: 7556.69
//
Query:       KKY19128.1  [L=765]
Description: putative mannosyl-oligosaccharide glucosidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.4e-167  558.4   4.4   4.3e-167  556.8   1.2    2.5  2  Glyco_hydro_63   Glycosyl hydrolase family 63 C-terminal doma
    1.4e-82  277.1   0.1    4.9e-82  275.4   0.0    1.8  2  Glyco_hydro_63N  Glycosyl hydrolase family 63 N-terminal doma
    1.5e-05   24.0   1.2    1.7e-05   23.8   0.2    1.5  2  Trehalase        Trehalase
  ------ inclusion threshold ------
      0.049   13.4   0.0          8    6.2   0.0    2.2  2  IPPT             IPP transferase


Domain annotation for each model (and alignments):
>> Glyco_hydro_63  Glycosyl hydrolase family 63 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.22   9.8e+02     457     471 ..      53      67 ..      35      73 .. 0.78
   2 !  556.8   1.2  9.5e-171  4.3e-167       1     490 [.     268     749 ..     268     750 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.22
                     HTSS--SEE-TTT-- CS
  Glyco_hydro_63 457 etGfvweqYddktGk 471
                      +G+ we+Yd +tG 
      KKY19128.1  53 MAGYGWEKYDIRTGG 67 
                     579*******99985 PP

  == domain 2  score: 556.8 bits;  conditional E-value: 9.5e-171
                     --HHHHHHHHHHHHHHHHHHHHHH----S--S-HHHHHHHHHHHHHHHHHT-EEEEEEEEE--S...........S---TT--S---........ CS
  Glyco_hydro_63   1 ltgeelseklekkkkefeekfekkFklkekldlekeelklakealsnllGgigyfyGdslvkre...........svleedefvkyk........ 76 
                     +t+e+l+++++k+  +f  kf ++ + k++++  +++  ++++++snl+Gg gyfyGdslv+r                       +        
      KKY19128.1 268 MTSENLQSAISKSIDSFSGKFTNILNPKSPFNA-DKYSDFSQAMFSNLVGGTGYFYGDSLVDRSyapeyeeenegF----------Weetaearq 351
                     57899*************************665.56889***********************98765554444440..........344455556 PP

                     ........EEEEEE--SBTTTB-SEEHHHHHHHHHHHHHH-HHHHHHHHHHHHTT--TT----SEE--HHHHHTTS-GGGTEE-TT-----HHHH CS
  Glyco_hydro_63  77 ........paeLftavPsRpfFPRGFlWDeGFhqllilkwdvdltleilasWldlinedGWipReqilgaearskvPeefvvqkpeianPPtlll 163
                             ++eLft+vPsRpfFPRGFlWDeGFh++++ +wd  l+l+i++sW+ l++++GWi+Reqilg earskvP ef+vq+p+ anPPtl++
      KKY19128.1 352 raqvtkdpEVELFTMVPSRPFFPRGFLWDEGFHLIPVIDWDPILALQIVQSWFALMDSEGWIAREQILGPEARSKVPPEFQVQYPHYANPPTLFM 446
                     66666676*************************************************************************************** PP

                     HHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTB---STT..........B--TT--SS.......--GGGS-TTS---SS--T CS
  Glyco_hydro_63 164 alkklleklklekvsekekeklleflkklyprlkkwfewfrktqkGkleet..........yrWrGRdatakrelnpktLasGlDDyPRashpse 248
                     +++ l++kl  + ++ ++ + l+  +++lyp lk+ +ewfr+tq+G+++++          yrWrGR+++       + L+sGlDDyPR ++p+ 
      KKY19128.1 447 VVDVLVQKLYSNALEPDTAKALKLGVEQLYPLLKRQYEWFRRTQTGDIKSYdreafstreaYRWRGRTVR-------HILTSGLDDYPRPQPPHP 534
                     ************9999999999999*********************************************.......****************** PP

                     T-B-HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTTEETTTTEE-EEEE-T.....................TTSS-EEEE- CS
  Glyco_hydro_63 249 aelhvDlrsWvalaakslksiaellgeeeekekyaktekelsenleklhwseeekayaDlgvhtekvklkkkevegqkkelvrvveeepelqlve 343
                      elhvDl sWv+l+++sl+++a++lge+e++ +++++ +++++n+++lhws+e++ay+D ++++                        +e+ l++
      KKY19128.1 535 GELHVDLISWVGLMTRSLNKVAKYLGEDEDATTFSTHVNAIVRNIDDLHWSNEASAYCDATIDD-----------------------YEEHVLIC 606
                     *************************************************************965.......................678889** PP

                     --BHHHHHHHHTT-S-TT-THHHHHHHHHH-TTTTEETTEEBSB-TTSTTTT-.....TT-SSSS-B-HHHHHHHHHHHHHH-.--SS-.--HHH CS
  Glyco_hydro_63 344 alGYvslfPlllklldadsekleklldlikdpeelwsdyGlrslskksslygkrntehdenYWrgpiWininylilsalkhys.kvegpykekak 437
                     ++GY+slfP++ +ll +ds++l+++ldli+dpeelwsd+G+rslskk++ yg      denYWr+p+W+n+nyli++ l++ +  +++p+k+ka+
      KKY19128.1 607 HKGYISLFPFMAGLLSPDSSHLDSVLDLISDPEELWSDHGIRSLSKKDPKYGL-----DENYWRSPVWMNMNYLIVDNLHRIAtATNSPHKSKAA 696
                     *****************************************************.....**********************9986899******** PP

                     HHHHHHHHHHHHHHHHHHHHTSS--SEE-TTT--EESSSS-TTGGGGHHHHHH CS
  Glyco_hydro_63 438 eiykeLrsnlvnnivkqyketGfvweqYddktGkgkgakeFtGWtslvvlima 490
                     +iy+ Lr+nlvn +++++ +tGf weqY++ tG g+++++FtGWtslvv i a
      KKY19128.1 697 KIYNALRRNLVNTVYNSWLDTGFAWEQYNPDTGAGQRTQHFTGWTSLVVSIAA 749
                     **************************************************987 PP

>> Glyco_hydro_63N  Glycosyl hydrolase family 63 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.4   0.0   1.1e-85   4.9e-82       7     227 .]       8     231 ..       5     231 .. 0.98
   2 ?   -1.3   0.1      0.44     2e+03      54      69 ..     718     733 ..     698     744 .. 0.82

  Alignments for each domain:
  == domain 1  score: 275.4 bits;  conditional E-value: 1.1e-85
  Glyco_hydro_63N   7 YrpnlYfGlrpRipkslltGLmWfkvddyasvqkklrhtceqgdglkkygWeeyDgrtgGkqtikDkennldlttsfvKvkdge.gGsWavrvk 99 
                       r+nlYfG+rpR+p+sl+tGLmW+kvd+yasvq+ +rhtceq+ g+++ygWe+yD rtgG+++i+D++n++d+t++fvKv++g+ gG+W++r+k
       KKY19128.1   8 HRSNLYFGVRPRLPRSLMTGLMWAKVDNYASVQNDFRHTCEQHAGMAGYGWEKYDIRTGGREVIHDAGNGIDITIDFVKVPGGSnGGNWGARIK 101
                      69**********************************************************************************9********* PP

  Glyco_hydro_63N 100 gkpredak.kaktsvvfYiglegegsleleee.dekglegdvkleGeskelgefkleitegpktnkhpesnhkse.kekplsktlvlslkvpde 190
                      g+preda+    ts++fY+g+eg g+l++++e de+g eg+v+++G++ elg+fkl+it+gp+tn+ p + h+++  ekpl++t v s++vp e
       KKY19128.1 102 GTPREDAPpVLLTSMIFYTGMEGFGTLDVTNEpDELGQEGQVTISGQTVELGDFKLDITKGPDTNTPPMNVHEAAwAEKPLDRTIVSSMQVPIE 195
                      ********8999******************77699****************************************99999************** PP

  Glyco_hydro_63N 191 nvwkakdillselkesvqaliekygkekklpppaqvl 227
                      ++w+ak++++s++k++v+ + e+yg+++ +ppp+q++
       KKY19128.1 196 AIWQAKQVVFSQMKTTVDGYWEEYGQDN-MPPPWQTF 231
                      ****************************.9****986 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.44
  Glyco_hydro_63N  54 kygWeeyDgrtgGkqt 69 
                      ++ We+y++ tg+ q 
       KKY19128.1 718 GFAWEQYNPDTGAGQR 733
                      6889999998888775 PP

>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.87   3.9e+03     179     216 ..     439     487 ..     434     503 .. 0.66
   2 !   23.8   0.2   3.9e-09   1.7e-05     307     482 ..     539     730 ..     536     745 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.87
                 --S--HHHHHHHHHHHC...........HCCHHHHHHHHHHHHHHHCCT CS
   Trehalase 179 SQPPlltdmvlrvyekt...........eddallravlaalkkeyefwm 216
                 + PP l ++v+ +++k+           + +  +++  + lk++ye + 
  KKY19128.1 439 ANPPTLFMVVDVLVQKLysnalepdtakALKLGVEQLYPLLKRQYEWFR 487
                 5799999999999999966666665555555555555555566555555 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 3.9e-09
                 HHHHHHHHHHHHHHHHCCCHCC-CCHHHHHHHHHHHHHHHHHHHCEETTTTEE--EETTTTEE----B...GGGGHHHHCT-S-HHHHHHHHHHCHHHH CS
   Trehalase 307 vDLNallyklekdiaefedklgdsetseefeekaekrkkaidkvLWneeagvylDYdlkkkkqtnyes...atnlvpLwaglaskeqaaklvakvlekl 402
                 vDL + +  + + + ++++ lg+ e +++f+++ ++  ++id+  W++ea +y D  +   +++  +      +l+p  agl s+++  ++ ++vl+ +
  KKY19128.1 539 VDLISWVGLMTRSLNKVAKYLGEDEDATTFSTHVNAIVRNIDDLHWSNEASAYCDATIDDYEEHVLIChkgYISLFPFMAGLLSPDS--SHLDSVLDLI 635
                 8999999999999******************************************999887666554411145799999******99..89******** PP

                 CCCCCEESCCCC-SBSSS.-S.....STTSTTEEEHHHHHHHHHHHHHTT-..........HHHHHHHHHHHHHHHHHHHHHCTSEBSCEETTSTS CS
   Trehalase 403 eesgllvaegglgtsllk.sg.....rQWDyPngWaPlqilavegleryge..........eelaerlaerwlktvtkafsdegklvEKYdvtrea 482
                  + ++l +++g+   + k ++     + W  P +W  + +l+v+ l+r+ +           ++ + l +++++tv++++ d+g   E Y+ ++ a
  KKY19128.1 636 SDPEELWSDHGIRSLSKKdPKygldeNYWRSP-VWMNMNYLIVDNLHRIATatnsphkskaAKIYNALRRNLVNTVYNSWLDTGFAWEQYNPDTGA 730
                 ********999988887766511111567677.7999************999999997666666678999********************987643 PP

>> IPPT  IPP transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0018         8      26      93 ..     289     347 ..     278     366 .. 0.61
   2 ?    4.8   0.0    0.0047        21     199     225 ..     464     490 ..     437     494 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0018
                 SS-B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-HH.HHHHHHCT.G.-S--B--HHHHHHHHHHH CS
        IPPT  26 idildpdeeysvadFqkdalkaieeilargkipilvGGTgl.Yikalleg.l.delpeadeelraeleeea 93 
                  +il+p+ ++++ ++ +  ++++++         lvGGTg+ Y ++l++  + +e++e++e +   +ee+a
  KKY19128.1 289 TNILNPKSPFNADKYSDFSQAMFSN---------LVGGTGYfYGDSLVDRsYaPEYEEENEGF---WEETA 347
                 5677777777777776666665555.........9*****83557787764444443333322...22221 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0047
                 HHHHHHHHHHHHHHHHHHHHHHHHTTC CS
        IPPT 199 leeaieklkaatrqyaKrQltWfrkkk 225
                  ++a++ +  +   + KrQ+ Wfr+++
  KKY19128.1 464 TAKALKLGVEQLYPLLKRQYEWFRRTQ 490
                 5677777788888899********875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.52
# Mc/sec: 4435.31
//
Query:       KKY19129.1  [L=1019]
Description: putative pheromone-dependent cell cycle arrest protein far11 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.9e-143  478.9   0.0     4e-106  355.9   0.0    2.3  2  DUF3402   Domain of unknown function (DUF3402)
    1.3e-81  274.0   0.7    1.7e-81  273.5   0.7    1.2  1  N1221     N1221-like protein


Domain annotation for each model (and alignments):
>> DUF3402  Domain of unknown function (DUF3402)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.1   0.0   3.6e-39   3.3e-35       1     182 [.     506     705 ..     506     706 .. 0.73
   2 !  355.9   0.0  4.5e-110    4e-106     219     462 .]     705     974 ..     703     974 .. 0.93

  Alignments for each domain:
  == domain 1  score: 122.1 bits;  conditional E-value: 3.6e-39
     DUF3402   1 PasilEAgelfskrvrmtramrqlweerekflkfergweeddeeedddleeltleekee......................eeeevdegpkkeelseee 77 
                 Pasi+EAg+lf++r+rmtramrqlw ere  +k +rgw ++ ++     +++t++e+++                        +e++e++ +e+++ e+
  KKY19129.1 506 PASIIEAGQLFASRMRMTRAMRQLWTERELSMKDDRGWLHQPKKLPGSESSITPDEQKKdvdgedappgvadggekqtksnVPVEDKEDHLEETNDPET 604
                 9*************************************9887555555667777766667888888999999998885543223333344444555569 PP

     DUF3402  78 kkrleavekfYkeaLphLqslvivllklilanvtalvtqqskakeqsinilaaelseeeelseksasgreknk.kkg.eakelskeeldaartrEitlk 174
                 ++rl+ +e+fY+e+Lp++qsl+ivllk+ l nv+a+++ +   ++      +  +++  ++  ++++++  ++ ++     + s++eld++r rEi  k
  KKY19129.1 605 NTRLRLIEDFYHESLPNMQSLIIVLLKTTLINVQAIASANGVPSS----AVEPGQQNGLPY--NKSNPNLAQTySSMlLDGQISTDELDHIRLREICHK 697
                 9*********************************88775322222....333333333333..22222222221333344599**************** PP

     DUF3402 175 Avsgilll 182
                 A+sg+l+ 
  KKY19129.1 698 AISGTLMN 705
                 *****985 PP

  == domain 2  score: 355.9 bits;  conditional E-value: 4.5e-110
     DUF3402 219 dvqqvveskndreelsFFqfcnlrskekekeeseseeeeee.eseddaapppikrkrssekaeeeeee...............eeeeeeatrpevdelg 301
                 +v++++++kndr+el+FF+fc+l+s++++ + +++  e++e +s d+aapppi r+r+s++a++ ++                 + +  + rp vdelg
  KKY19129.1 705 NVDEIIATKNDRDELGFFHFCHLNSDHPPLSPTSPLPEDDEaSSPDEAAPPPILRHRRSPQADSGSRLgdfetpdhesasaddPTPAFFTDRPAVDELG 803
                 8999***********************99998877665554499**************998877777799*******998776555566789******* PP

     DUF3402 302 yPvnplpeepitdfswrnffslinlLrilqkicknkahRnllLvqyksseiLkkaLkvpqpeLrlytLKllKnqvpYcGrkWrqsNMrvitaiYlhcrp 400
                 +P++plp++pit fswrnff++in+Lrilqki+++kahR+llLvqykss+iL+k Lkvp+p+LrlytLKl+K+qvpYcGrkWrqsNMrvitaiYlhcrp
  KKY19129.1 804 NPIAPLPASPITVFSWRNFFTSINFLRILQKITRQKAHRCLLLVQYKSSTILRKNLKVPDPMLRLYTLKLFKSQVPYCGRKWRQSNMRVITAIYLHCRP 902
                 *************************************************************************************************** PP

     DUF3402 401 eLrDdWlag...sdvdaeveealplEqaLrglthwfnlrrYpdkm.......aaeeraalreeqdffkrele 462
                 eLrDdWlag   s+++ ev+ealplEqaLr+lthw++lrrY d m        ++ +++ +eeqd+f+rel+
  KKY19129.1 903 ELRDDWLAGmhdSNIEGEVDEALPLEQALRALTHWWHLRRYRDVMgandeerLGTGEEMNDEEQDYFQRELN 974
                 *********9999********************************8777766556689999*********96 PP

>> N1221  N1221-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.5   0.7     2e-85   1.7e-81       2     289 .]      70     397 ..      69     397 .. 0.93

  Alignments for each domain:
  == domain 1  score: 273.5 bits;  conditional E-value: 2e-85
       N1221   2 aydFeykdsdsleeEldeWFsys..dvvlllkakkaFeskweevse.............eeeeWedvdederkkfverlleslessdka.Rlealeall 84 
                 ay+F+y+d+++++eE++eWF+y   ++++ll++k++Fe+kw+++++              e +W d++++ rk+f+  +l++ +++d   R+ea+e ++
  KKY19129.1  70 AYAFQYADAQPFPEEVEEWFQYVdqERQMLLSSKEVFEQKWNNYCKssaaardraslddYEVSWLDAPQSIRKEFLYPILKETDHPDILvRIEAAEVIF 168
                 7**********************8778*******************************98899*********************987778********* PP

       N1221  85 YialGtwge....................tkstseqleaikenvkllreagglealwealkkafekereds.edekkae...e.qqlqeesselalllt 158
                 Y++ G+wg                        +  ql++++++++ll e++g++ l+++l++ f+  +++  e++ +a+   e  +   +++e+ +l++
  KKY19129.1 169 YVLAGVWGWtagltpqqqqdedshddedrLIYSRVQLQWMQKGAALLDECSGIPLLFRYLQRLFSDTQSPPpEQQFAADehdErVNEYAQQREITILMS 267
                 *************************9999888999*******************************99999533333334542677777889******* PP

       N1221 159 ilYllvevaree..seddeelreellelepnllqflveliaklrwddakslplkkillLlwKllLlvfGgteelkevkkalrelhglseeskekekkpl 255
                   Yl++e+ar++  +    +lr++++ l+pn+l+flv++ia lrw++++++pl+k+llL+wK+lLl+fGg + l+++k++l+ +++l    + + ++p+
  KKY19129.1 268 SWYLIIEIARKQldDGVVPHLRKAIICLKPNVLVFLVDVIASLRWNEQSNIPLTKLLLLFWKTLLLIFGGDNALQQTKNILQPKKDL---FSADASHPI 363
                 ***********987777889***************************************************************9999...45556679* PP

       N1221 256 itasPldYhaFrqeitskYPaynppepllpleae 289
                 +tasPldYh FrqeitskYPaynpp+pl+ple e
  KKY19129.1 364 LTASPLDYHFFRQEITSKYPAYNPPPPLIPLELE 397
                 *******************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1019 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.49
# Mc/sec: 6210.08
//
Query:       KKY19130.1  [L=604]
Description: putative amino acid transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-62  210.4  39.1    5.6e-62  209.9  39.1    1.2  1  AA_permease_2  Amino acid permease
    4.7e-25   88.1  24.9    4.7e-25   88.1  24.9    2.1  2  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.9  39.1   6.2e-66   5.6e-62       7     404 ..     118     559 ..     112     580 .. 0.85

  Alignments for each domain:
  == domain 1  score: 209.9 bits;  conditional E-value: 6.2e-66
  AA_permease_2   7 falvigsvigsgifvkn.....laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasi.l 96 
                    + lv+g++igsgif ++      a+s+g++li+w++ ++l++  +++  yaEl++ +p +gG+ vy++++fg+ ++fl++w+++    p+ a+i +
     KKY19130.1 118 LSLVVGLIIGSGIFSSPsqvnsHAGSPGASLIVWLIAGILAW--TGASSYAELGGSIPLNGGAQVYLAKIFGEMIGFLFTWCAVCVLKPGSAAIiA 211
                    579*************9*99999999******9999999986..8********766***************************8888887666626 PP

  AA_permease_2  97 svaasyllna.lgpdlqg.ntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl....stetdtffpng 186
                    +++++y + a +g ++++ n w+ +++a + l+lv+l+n+++++   +i    +++k+ + l ++ i+g++++  g + +      ++t+ +f n+
     KKY19130.1 212 IIFGEYVVRAaIGAEVEEiNGWINKGVALGGLVLVTLFNCISTRFATRIGDLFMYFKF-VALMFVTIVGVVVAATGLSFNGkansDWKTHGWFENT 306
                    779999988834555555589*************************************.69999999***99988755433353344444466663 PP

  AA_permease_2 187 wp.gv..llgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivv 277
                    +  ++  +++l++ lw+fdG+++ ++v+ e k+  +d+p++i  ++ +v+++y+l n+++++v+p  +i+++++   va  f ++v+g+ ++ +++
     KKY19130.1 307 SHdISdwAVALYAGLWAFDGWDNTNYVTGEFKNpsRDLPRVIHTAMPLVVLFYILANVSYFFVLPLTTIESSNT---VAVQFGNKVFGPLGSLALA 399
                    3323266889********************887779**********************************8665...79***************** PP

  AA_permease_2 278 ilialsllgaintavigssrvlealardgvlPrffakv.....................................nkfgspiraiiltaivslill 336
                    +++  s++ga+n+ +++s r+++ ++++++lP++f k                                          +pi+a+ l+a+++ +++
     KKY19130.1 400 LIVSASCFGALNATTFTSGRLVYVAGQENYLPSVFGKLgfgpsssstdlatnipsrlrarscfqratsrifgddiGIGYTPINAMLLNALLT-AIY 494
                    **************************************999999999999999988888877776666555554433445***********9.666 PP

  AA_permease_2 337 llfllassaaynfllsvsslgliisyllliigalilrkkrphlkrpgk..ilvaiigalfllfllvalff 404
                    +++       + +l + + ++ +i+y+l+++g+++lr+++p+l+rp+k  i++ ii+++++lfl+  ++f
     KKY19130.1 495 IVV-----GEFETLITFYGVAGYIFYFLTVLGLIVLRIREPRLERPYKtwITTPIIFCCVSLFLVSRAIF 559
                    555.....37***********************************8887558999999999999944444 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1  24.9   5.2e-29   4.7e-25       6     331 ..     121     437 ..     117     438 .. 0.81
   2 !    4.6   4.8    0.0011       9.8     336     420 ..     479     558 ..     461     583 .. 0.83

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 5.2e-29
  AA_permease   6 alggviGtglfvglgvvlsqaGplga.llayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasiliq 102
                   +g +iG g+f + + v s+aG  ga l+++l+ag+  +  + s +e+   +p +gg+++y ++  g+  Gf   +    + ++  + + ++a+i+ +
   KKY19130.1 121 VVGLIIGSGIFSSPSQVNSHAGSPGAsLIVWLIAGILAWTGASSYAELGGSIPLNGGAQVYLAKIFGEMIGFLFTWC--AVCVLKPGSAAIIAIIFGE 216
                  6899*********99999999866666**************************************999999999999..3333333444444444444 PP

  AA_permease 103 fwelvtdlpkawvt..........gavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgf 190
                  ++  v++++ a+v           ++  lv+++++n ++ ++  ++  +++ +k++a+  + ivg+++ a g   +g      ++n+    ++ ++g+
   KKY19130.1 217 YV--VRAAIGAEVEeingwinkgvALGGLVLVTLFNCISTRFATRIGDLFMYFKFVALMFVTIVGVVVAATGLSFNG------KANS----DWKTHGW 302
                  44..4444444444555558899977789999999999999999999999999999999999999666665555555......2222....2445554 PP

  AA_permease 191 akeeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvl 288
                   ++++  ++++++++ + + af+G  ++ ++ gE k+P++++P++i  ++ ++++fY+l+ +++ +++p +   + n +a      v f+++   ++ 
   KKY19130.1 303 FENTSHDISDWAVALYAGLWAFDGWDNTNYVTGEFKNPSRDLPRVIHTAMPLVVLFYILANVSYFFVLPLTTIESSNTVA------VQFGNKVFGPLG 394
                  4555555*****************************************************************88888444......567777777777 PP

  AA_permease 289 aplinaviltaalssansslysasRvlyslakdglaPkvlkkv 331
                  +  +++++ +++++++n+ ++++ R++y   +++++P+v++k+
   KKY19130.1 395 SLALALIVSASCFGALNATTFTSGRLVYVAGQENYLPSVFGKL 437
                  77888999999999***********************999875 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0011
  AA_permease 336 vPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfRkalkyqgrsieelgfkaallplgvilvla 420
                   P++a+ll +++ ++ +++ ++ +    ++ + +a + +++l v++li l +   R + + ++ +i   +++ ++++l++++  +
   KKY19130.1 479 TPINAMLLNALLTAIYIVVGEFETL---ITFYGVAGYIFYFLTVLGLIVLRIREPRLE-RPYKTWI-TTPIIFCCVSLFLVSRAI 558
                  7************************...888889999999999999999999999999.5566666.699999999988876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 3790.89
//
Query:       KKY19131.1  [L=327]
Description: putative short chain dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-18   65.1   0.0    7.6e-18   64.7   0.0    1.2  1  adh_short     short chain dehydrogenase
    8.3e-12   45.2   0.1    2.5e-11   43.6   0.1    1.7  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   8.5e-22   7.6e-18       6     193 ..      91     290 ..      89     292 .. 0.84

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 8.5e-22
                 ESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S...............S- CS
   adh_short   6 tGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi...............tg 89 
                 +  ssGIG+ +   + k +a+ ++ ++  +   e+++     +ak+++ qv+ +d ++ve+lv +  k++ ++d++++ A+i                 
  KKY19131.1  91 VSYSSGIGHTFLSYYSK-DASNTIHAIDVKFPDEIVNRKA--AAKLVTHQVNASDPSAVEKLVYEDLKDV-PIDLFIHSAAIrglvkgkveedkhnpGA 185
                 55689999988766555.5666666777666667777644..468******************9998887.7*********************988666 PP

                 -SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG...TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSH CS
   adh_short  90 sgpfselseeewervievNltgvflltravlpamlkqssGrIvnvsSvag...kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTd 185
                  ++ + +++e++ +++e+N++g fll+r +lp+++ +++Gr+v +sS  g    ++  +  aY AsKa++++ ++s++ ++ +  i  ++++PG v++ 
  KKY19131.1 186 AETLEAMDKETMMKTFEINIVGSFLLIRGLLPNLKLAEQGRVVVMSSRMGsltANKEGSSYAYRASKAGLNAVIKSFSLDVPE--IPFIIMHPGKVESR 282
                 67777778888*************************************9963233444556788****************998..9************* PP

                 HHHHHCTH CS
   adh_short 186 makelrek 193
                 m+ ++re+
  KKY19131.1 283 MVPNIREE 290
                 **999875 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.1   2.8e-15   2.5e-11      41     198 ..     129     305 ..      94     323 .. 0.78

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 2.8e-15
                   TTSE.E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG.............CSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHH..HCTSC CS
  adh_short_C2  41 lgae.v.lecDVtdeeqvealveevvekfgklDilvnnagiapk.............lkgpfletsreefdraldvnlyslfllakaalp..lmkeg 120
                     a+ v  +++++d+++ve+lv e  +++  +D ++++a+i                  + ++ +++e + +++++n+ + fll++ +lp   ++e+
    KKY19131.1 129 AAAKlVtHQVNASDPSAVEKLVYEDLKDV-PIDLFIHSAAIRGLvkgkveedkhnpgAAETLEAMDKETMMKTFEINIVGSFLLIRGLLPnlKLAEQ 224
                   234444699*************9999887.8**********887667777776666445556668*************************9888899 PP

                   CEEEEEEEGGGTSBSTTTT...HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHH..HHHHHHHHSTT CS
  adh_short_C2 121 gsivnlssvgaervvpnyn...aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfde..lleelearapl 198
                   g++v +ss  ++ + ++     ay a+Ka+l+a+++++  ++ +  i     +pg ++ +++ +i+++ +   +e++e++ p+
    KKY19131.1 225 GRVVVMSSRMGSLTANKEGssyAYRASKAGLNAVIKSFSLDVPE--IPFIIMHPGKVESRMVPNIREEGAvdPEEAVEEMLPI 305
                   ******9986666655554479*****************99988..9999999999999999999886551145566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2212.86
//
Query:       KKY19132.1  [L=312]
Description: putative serine threonine protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-06   28.2   2.1    2.9e-06   27.4   0.0    2.0  2  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.6e-10   2.9e-06     110     198 ..      12     114 ..       6     117 .. 0.78
   2 ?   -2.7   3.2      0.25   4.4e+03     112     134 ..     266     288 ..     174     307 .. 0.48

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.6e-10
                 -STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC..HHHHHHHH.........HHHHHHHH--S..SS-EEEE-SS-SGGGEEEC...TTEEEEE---T CS
         APH 110 paalpladflaqdlellrqlesatarllaselld..lleeleeq.........vlaalaallpg..elptvllHgDlhpgNllvd.pddgrvtGviDfe 194
                 ++++++++ l q+ + l+ + +++ +++ +e+     +  le+          vl++l +l +   ++ ++l+H Dl+ +N+ v   d++ +tGviD++
  KKY19132.1  12 GPDRGPCHSLTQYCNTLIRIGKSRIPKVEPETYLlpYQGSLEDHkalladskpVLERLIQLPQIqkAGIPTLMHYDLNKRNIFVSdIDPTVITGVIDWQ 110
                 567888888888888888888887788888877775555555545555566667777777777799999****************8899999******9 PP

                 T-EE CS
         APH 195 dagl 198
                  +++
  KKY19132.1 111 STSV 114
                 8776 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.25
                 TTTB-SHHCHTCCHHHHHHCHHH CS
         APH 112 alpladflaqdlellrqlesata 134
                 + p + + a ++++ + +e++++
  KKY19132.1 266 WVPADAWDAARAANKAAFEQWMQ 288
                 33444455555555555555533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2200.63
//
Query:       KKY19133.1  [L=721]
Description: putative ring finger protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-18   67.1  41.5    3.2e-14   52.9   5.9    4.1  4  IBR           IBR domain, a half RING-finger domain
      2e-13   50.7   0.0      4e-13   49.7   0.0    1.6  1  RWD           RWD domain
    0.00081   19.7  10.5    0.00081   19.7  10.5    4.2  4  zf-RING_2     Ring finger domain
     0.0013   18.6  10.4     0.0013   18.6  10.4    4.4  3  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
     0.0023   17.9   8.7     0.0023   17.9   8.7    3.6  3  zf-RING_UBOX  RING-type zinc-finger
      0.005   16.5   7.3      0.005   16.5   7.3    2.7  3  zf-RING_11    RING-like zinc finger
  ------ inclusion threshold ------
      0.011   15.7  10.8      0.011   15.7  10.8    3.7  3  zf-RING_5     zinc-RING finger domain
       0.11   12.9   0.0        0.3   11.5   0.0    1.7  1  Phage_B       Scaffold protein B


Domain annotation for each model (and alignments):
>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   6.9     0.026        59      26      55 ..     209     238 ..     206     246 .. 0.78
   2 ?    1.1   0.1      0.21   4.6e+02       8      28 ..     240     261 ..     236     272 .. 0.80
   3 !   52.9   5.9   1.4e-17   3.2e-14       1      60 [.     294     393 ..     294     396 .. 0.94
   4 !   22.9   9.4   3.4e-08   7.6e-05       9      53 ..     412     452 ..     403     455 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.026
         IBR  26 CeaiieksegcksvtCsk...CgfefCfnCkke 55 
                 C+  +e+++g ks  C++   Cg+ fC++C++e
  KKY19133.1 209 CGICLEPKKG-KS--CHRligCGHVFCVQCLRE 238
                 7766677777.34..888888*********987 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.21
         IBR   8 lkksles.dpnlkwCprpdCea 28 
                 +++s+++ d +++ C +p C +
  KKY19133.1 240 YNNSISEgDVDRVRCLEPSCAK 261
                 566677778899********86 PP

  == domain 3  score: 52.9 bits;  conditional E-value: 1.4e-17
         IBR   1 ekyeklklkkslesdpnlkwCprpdCeaiieksegcks........................................vtCskCgfefCfnCkkewHeg 59 
                 ++y +lk+kk lesd+++++Cpr++C+++++++++ k                                           C++C+++fC+ Ckk wH++
  KKY19133.1 294 QRYVHLKRKKRLESDQSTVYCPRQWCQGAARSKKHPKPvdpmadefedvldpedqpvdrkevkkkpkedeyppmadrlCICEDCSYAFCSVCKKGWHGE 392
                 699********************************6667788999******************************99988*****************98 PP

         IBR  60 l 60 
                 l
  KKY19133.1 393 L 393
                 8 PP

  == domain 4  score: 22.9 bits;  conditional E-value: 3.4e-08
         IBR   9 kkslesdpnlkwCprpdCeaiieksegcksvtCskCgfefCfnCk 53 
                 +++l     ++ Cp   C a+++k+ gc+++ C kC++ fC+ C 
  KKY19133.1 412 AEYLML--HTTPCP--TCAAPCQKTMGCNHMICFKCKTHFCYLCS 452
                 444444..3689**..9***************************6 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   1.8e-16     4e-13       2     115 ..      11     165 ..      10     166 .. 0.94

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 1.8e-16
                 HHHHHHHHHHHHSTTTCCCCHT--EE--S-EEEEEEECECCCC............................................TT-CEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................xxxxxxxxxxxxxx RF
         RWD   2 eqeqEleaLesIypdefevienenysikleikikldededeedse........................................feekkkpslkleik 60 
                 e++ El+++++I+p+   +   +++ ++l++++ +  + + ++s                                          + +++p++ + i+
  KKY19133.1  11 ERAIELSSIAAIFPEIVLDPT-KPFDAQLSLQVAPVAPLKVQFSVladgappallptpptsdtdlrkttatkrsedvvnevtdetYNLTYLPPVLVRIH 108
                 7888************98888.8899888899999999888888799999************************************************* PP

                 E-SSTT.SS--EEEEEECC.SS-HHHHHHHHHHHHHHHHHTTTS--CHHHHHHHHHH CS
                 xxxxxx.xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD  61 lpeeYP.eeaPiislsste.nlpkeqvksleekleelaeenlgepvifalidwlken 115
                 lp  YP e++Pi+++s+   ++pk ++++l+    +l+ee   ++v+f++id+++++
  KKY19133.1 109 LPDGYPsEKPPIFQVSTLPiWIPKRKLEDLTAAGVRLWEELGHDQVVFSYIDHIQQS 165
                 ******889999999998899**********************************97 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7  10.5   3.6e-07   0.00081       2      37 ..     208     243 ..     207     259 .. 0.79
   2 !    6.2   3.7    0.0058        13      14      40 ..     369     396 ..     362     397 .. 0.78
   3 ?   -0.2   0.4       0.6   1.4e+03      36      43 ..     417     425 ..     411     426 .. 0.68
   4 ?   -4.5  16.9         8   1.8e+04       3      33 ..     422     447 ..     420     473 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.6e-07
   zf-RING_2   2 eCpICleelssadsvlll.pCgHvfhreClerwlrss 37 
                 eC+ICle+  +++s+++l  CgHvf+ +Cl++  ++s
  KKY19133.1 208 ECGICLEPK-KGKSCHRLiGCGHVFCVQCLRECYNNS 243
                 8****9776.5677776669**********9965555 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0058
   zf-RING_2  14 dsvlll.pCgHvfhreClerwlrssstC 40 
                 d+++++ +C++ f+  C + w  + s C
  KKY19133.1 369 DRLCICeDCSYAFCSVCKKGWHGELSVC 396
                 55555549*********99998877766 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.6
   zf-RING_2  36 ssst.CPlC 43 
                  + t CP+C
  KKY19133.1 417 LHTTpCPTC 425
                 44556**** PP

  == domain 4  score: -4.5 bits;  conditional E-value: 8
   zf-RING_2   3 CpICleelssadsvlllpCgHvfhreClerw 33 
                 Cp C  ++++     ++ C+H+++++C +++
  KKY19133.1 422 CPTCAAPCQK-----TMGCNHMICFKCKTHF 447
                 7777644432.....3368888888886653 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6  10.4   5.7e-07    0.0013       1      32 [.     209     242 ..     209     259 .. 0.88
   2 ?    0.8   2.3       0.2   4.5e+02      15      29 ..     375     389 ..     355     399 .. 0.81
   3 ?   -6.3  18.7         8   1.8e+04       1      27 [.     422     445 ..     420     473 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 5.7e-07
                 -TTT-S--SS-E...E-TTS--B-CHHHHHHHHC CS
    zf-C3HC4   1 CpiCleeakepn..elleCkHsfCskCirkilks 32 
                 C iCle  k ++  +l+ C+H fC +C+r+++++
  KKY19133.1 209 CGICLEPKKGKSchRLIGCGHVFCVQCLRECYNN 242
                 99*********9********************97 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.2
                 -TTS--B-CHHHHHH CS
    zf-C3HC4  15 leCkHsfCskCirki 29 
                  +C  +fCs C + +
  KKY19133.1 375 EDCSYAFCSVCKKGW 389
                 68999******8766 PP

  == domain 3  score: -6.3 bits;  conditional E-value: 8
                 -TTT-S--SS-E.E-TTS--B-CHHHH CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCir 27 
                 Cp C    ++   ++ C+H +C+kC +
  KKY19133.1 422 CPTCAAPCQK---TMGCNHMICFKCKT 445
                 6666554444...579******99966 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   8.7     1e-06    0.0023       1      38 [.     209     254 ..     209     255 .. 0.79
   2 ?   -1.4   2.0       1.1   2.4e+03      16      24 ..     377     385 ..     361     400 .. 0.72
   3 ?   -4.4  12.4         8   1.8e+04       1      24 [.     422     443 ..     422     459 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1e-06
  zf-RING_UBOX   1 CpIClelft....dPlvlpCGHtFCreCl.w....elskslegafkC 38 
                   C ICle+ +    + l+ +CGH+FC +Cl +     +s++  ++++C
    KKY19133.1 209 CGICLEPKKgkscHRLI-GCGHVFCVQCLrEcynnSISEGDVDRVRC 254
                   9*****88876644433.9**********725567888888888888 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
  zf-RING_UBOX  16 CGHtFCreC 24 
                   C+  FC+ C
    KKY19133.1 377 CSYAFCSVC 385
                   777777766 PP

  == domain 3  score: -4.4 bits;  conditional E-value: 8
  zf-RING_UBOX   1 CpIClelftdPlvlpCGHtFCreC 24 
                   Cp C  + ++  + +C H +C +C
    KKY19133.1 422 CPTCAAPCQKT-M-GCNHMICFKC 443
                   77788777555.4.9********* PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   7.3   2.2e-06     0.005       1      29 []     208     236 ..     208     236 .. 0.96
   2 ?   -4.2   2.5         7   1.6e+04      17      23 ..     432     438 ..     427     443 .. 0.67
   3 ?   -3.4   0.4       3.8   8.5e+03      22      25 ..     488     491 ..     487     492 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.2e-06
  zf-RING_11   1 eCsICLeefkpgqalfilpCsHtFHfkCI 29 
                 eC ICLe+ k + + ++  C+H+F ++C+
  KKY19133.1 208 ECGICLEPKKGKSCHRLIGCGHVFCVQCL 236
                 9***********************99995 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 7
  zf-RING_11  17 ilpCsHt 23 
                 ++ C+H+
  KKY19133.1 432 TMGCNHM 438
                 5679997 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.8
  zf-RING_11  22 HtFH 25 
                 H FH
  KKY19133.1 488 HRFH 491
                 **** PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7  10.8   4.8e-06     0.011       1      33 [.     208     240 ..     208     260 .. 0.87
   2 ?   -4.1   4.8       7.7   1.7e+04      33      43 ..     377     386 ..     369     396 .. 0.67
   3 ?   -8.0  14.8         8   1.8e+04      17      30 ..     432     445 ..     421     453 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.8e-06
   zf-RING_5   1 hCnkCfeklskeekfyltsCgHifCekClkkll 33 
                 +C +C e+ ++++   l  CgH+fC +Cl+++ 
  KKY19133.1 208 ECGICLEPKKGKSCHRLIGCGHVFCVQCLRECY 240
                 6********99999****************997 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 7.7
   zf-RING_5  33 lekeavCpiCr 43 
                   ++a C++C+
  KKY19133.1 377 C-SYAFCSVCK 386
                 3.455566665 PP

  == domain 3  score: -8.0 bits;  conditional E-value: 8
   zf-RING_5  17 ltsCgHifCekClk 30 
                 ++ C H++C kC +
  KKY19133.1 432 TMGCNHMICFKCKT 445
                 578********965 PP

>> Phage_B  Scaffold protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013       0.3      37      78 ..     278     321 ..     267     332 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
                 ----..------------------HHHHHHHHHHHHHHHHHHSS CS
     Phage_B  37 lnpt..yqaglrrdavqpdieaerkkrdeieagksycsrrfgga 78 
                 lnp+   q  l +d vq  +  +rkkr e +    yc r++   
  KKY19133.1 278 LNPSelLQIPLEQDIVQRYVHLKRKKRLESDQSTVYCPRQWCQG 321
                 6665336899*****************************98643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 4797.90
//
Query:       KKY19134.1  [L=191]
Description: hypothetical protein UCRPC4_g04642 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1169  (0.0652016); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.82u 0.38s 00:00:01.20 Elapsed: 00:00:00.58
# Mc/sec: 999.01
//
Query:       KKY19135.1  [L=480]
Description: putative amp-binding enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-48  164.9   0.1    1.6e-41  142.3   0.0    2.2  2  AMP-binding    AMP-binding enzyme
      7e-17   62.2   0.0    1.6e-16   61.0   0.0    1.7  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.6e-08   0.00014     149     177 ..     134     162 ..      91     164 .. 0.77
   2 !  142.3   0.0   1.8e-45   1.6e-41     240     422 ..     166     361 ..     162     362 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.6e-08
                  -TSCCCS-BTTSEEEEEEE--SSSS-EEE CS
  AMP-binding 149 kpeeeeelkpddlayiiYTSGTTGkPKGV 177
                  + +++++l+p d+++i++TSGTT +PK++
   KKY19135.1 134 EFVPTSALDPYDIVNIQFTSGTTSMPKAA 162
                  24566789*******************86 PP

  == domain 2  score: 142.3 bits;  conditional E-value: 1.8e-45
                  CHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHH.C.HHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTC.EEEEEEEEGGGSSEC..EECHCTTT CS
  AMP-binding 240 ldpklllelieklkvtviagvPrvleallesgalk.a.akkakdlsslrlvllggeplspellrffralfge.evlegYGlTEttgvv..tvlpleed 332
                  ++p + le++ +++ t ++gvP+++   l++ a++   +     + slr+ +++g+p+ ++l+r+++++f   e+  +YG+TEt++v   t  +++  
   KKY19135.1 166 FSPSATLEAVVAERGTALYGVPTMFISELDHLAFSpVgKFPPDGFASLRTGIAAGSPIAAALMRKLHRIFNLtELTICYGMTETSPVSfmT-TTDDPM 262
                  456677899999**************99886556544555566899************************8899**************642.444444 PP

                  CTSTTS-BEE-TTEEEEEE-TTTSCBE.ETTSEEEEEEEETTS-SEBTT-HHHHHHHEEE.......TCC.EEEEEEEEEEETTSEEEEEEECCCEEE CS
  AMP-binding 333 kkklgsvGkplpgvevkivDeetgepv.pdgeeGellvrgpgvmkgYlkkpeataeafds.......egr.wlrTGDlgrldedGyleivgRkkdlik 421
                  +k+++svG+ +p+v+ kivD+++  ++ + ge Gel v+g  +m+gY++++++t++++++       + + w++TGD + +de+Gy++i+gR+kdli+
   KKY19135.1 263 DKRVNSVGRLMPHVRGKIVDPHDRSRIlQVGERGELAVSGYLTMQGYWNDEKRTSDVLVKdesikegDYQfWMHTGDEALMDEEGYVRITGRIKDLII 360
                  56899***************987654438*****************************9778999753345**************************8 PP

                  E CS
  AMP-binding 422 l 422
                  +
   KKY19135.1 361 R 361
                  6 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   1.8e-20   1.6e-16       1      76 []     370     465 ..     370     465 .. 0.89

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 1.8e-20
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE---.---....................HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg.sea....................leeeLkahvrkelgpyavpkkvvfvdelpktrsG 75 
                    e+E++l+sh aV++a VvG +d + Ge ++afV+l++  + +                    ++ +L++hv+k+l  + vpk++ fvd+ pkt+sG
     KKY19135.1 370 EIENCLLSHAAVSDASVVGLKDYKYGEEVAAFVILQNSkK-PrvledssaidilmrdfearrVATTLREHVAKHLSRHLVPKRFFFVDDYPKTASG 464
                    8**********************************54321.223444667888888899999********************************** PP

                    - CS
  AMP-binding_C  76 K 76 
                    K
     KKY19135.1 465 K 465
                    9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.53
# Mc/sec: 2717.30
//
Query:       KKY19136.1  [L=540]
Description: putative homoserine o-acetyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-48  165.0   0.0    1.3e-47  162.6   0.0    1.9  1  Abhydrolase_1  alpha/beta hydrolase fold
    0.00058   19.6   0.8    0.00095   18.9   0.0    1.7  2  Esterase       Putative esterase


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.6   0.0   1.4e-51   1.3e-47       1     255 [.     151     526 ..     151     528 .. 0.93

  Alignments for each domain:
  == domain 1  score: 162.6 bits;  conditional E-value: 1.4e-51
                    SEEEEE-STTTCGGG..........GTTGHHHHHHHHT..TSEEEEEEETTSTTSSSTTTGB.........CHHSHHHHHHHHH.HH..HHHCTTS CS
  Abhydrolase_1   1 pvlvilhGlpgssdv..........waerglapaLakd..gfdvillDlrGvgySspapacin........ddygtasvaddld.ri..ldalgdd 73 
                    ++++++ Gl +ss+           w+e++++p+L+ d  ++++i+++++G +++s++p++ +        +++++ +++d+++ ++  ld+lg+ 
     KKY19136.1 151 NAILLHTGLSASSHAhsthanpsagWWEKFIGPGLPLDtnEYFIICTNVLGGCFGSTGPSSLDpldgkwyaTRFPILTMEDMVRaQFllLDHLGIT 246
                    689********999999999****************************************************************94469******* PP

                    SEE.EEEETHHHHHHHHHHHHHGGGEEEEEEESE....CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH CS
  Abhydrolase_1  74 klt.lvGhSmGGmialayaaeyperVkalvllga....idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfp 164
                    kl+  vG SmGGm++la+  ++perV ++v++++    ++++++++++qrq+++ +p++++g+++d  ++++g++la+e a++++r+        p
     KKY19136.1 247 KLNaSVGASMGGMQSLAAGVLFPERVGRIVSISGcarsHPYSIAMRHTQRQALMMDPRWNRGFYYDSIPPHSGMKLAREIATVTYRSG-------P 335
                    ****************************************************************************************.......* PP

                    CHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHC...................................................... CS
  Abhydrolase_1 165 dkskrfpssgsdnasslatgalksieqwpttdsaklllrlre...................................................... 206
                    +++ rf + + d+++ +a + ++ ie++ +++  k+ l+++                                                       
     KKY19136.1 336 EWENRFGRRRADPEKPPALCPDYLIETYLDHAGEKFSLQYDPnsllyiskamdmfdlgkshqrstaqrrqanesrltstansepepaascsltlpd 431
                    ************************************************************************************************ PP

                    ....................................THHHHS....EEEEEEETTCSSSCHHHHHHHHHCHTS.........EEEEEEETCSSSHH CS
  Abhydrolase_1 207 ....................................lknvla....ptlvisgtsDplvppkaledlaqllpk.........krlvvisdagHlaf 253
                                                        l   ++    p+lv++ +sD l+p  +++++a++l+          ++ + is+ gH+ f
     KKY19136.1 432 qpyeeqddtitksmdepatsstasqmsgppadlvdgL---SSlanhPVLVVGVASDILFPAWQQREIAEALKAagnrqvthvELGEDISQFGHDTF 524
                    ****************************999974432...336678***************88888888844444444555777788888888877 PP

                    HH CS
  Abhydrolase_1 254 le 255
                    l+
     KKY19136.1 525 LL 526
                    75 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2      0.44   3.9e+03     145     159 ..     165     179 ..     158     188 .. 0.82
   2 !   18.9   0.0   1.1e-07   0.00095     116     153 ..     243     285 ..     220     330 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.44
                 EES--S-CCHCHHHC CS
    Esterase 145 sfSpivnpsnamWgq 159
                 ++S ++nps+  W +
  KKY19136.1 165 AHSTHANPSAGWWEK 179
                 799999999998865 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 1.1e-07
                 C.....EEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CC CS
    Esterase 116 g.....ravaGqSmGGlgALilalkhpdrFgsvssfSpivnps 153
                       +a +G+SmGG+ +L +++  p+r g++ s S+ +   
  KKY19136.1 243 LgitklNASVGASMGGMQSLAAGVLFPERVGRIVSISGCARSH 285
                 334445889****************************996554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.51
# Mc/sec: 3191.35
//
Query:       KKY19137.1  [L=373]
Description: putative alpha-mannosyltransferase subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-16   58.5   0.0    1.9e-15   57.3   0.0    1.5  1  Gly_transf_sug  Glycosyltransferase sugar-binding region cont
  ------ inclusion threshold ------
       0.16   12.1   0.2        0.5   10.5   0.2    1.8  1  Usg             Usg-like family


Domain annotation for each model (and alignments):
>> Gly_transf_sug  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   2.1e-19   1.9e-15      10      94 ..     129     207 ..     122     209 .. 0.94

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 2.1e-19
  Gly_transf_sug  10 slakahpdyqvvvlskelekvrvaildlefllsdtpwfeeakkllplfialsDllRlaiLykyGGiYlDtDvivlkslrnsigae 94 
                     s+ ++hp + + v+++e+         +++l+   p + ea+++lp+++ ++D++R++iL++ GGiY+D+D+i lk+  +++++e
      KKY19137.1 129 SWSEKHPGFIHEVVNDEQA-----DHLIKYLYAAIPDVYEAYESLPVPVLKADFFRYLILLARGGIYTDIDTIALKPT-MEWLPE 207
                     89**************987.....66699*******99****************************************.899875 PP

>> Usg  Usg-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   5.6e-05       0.5      11      60 ..      89     143 ..      86     153 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.6e-05
         Usg  11 eilYrlP.DhpsllqsyvwqdyDlaPe...fP.elkkFldfWqrelegklhsvrv 60 
                 +i Y++P D  s l  y+wq +  +P    f  +l+ F + W+++  g +h+v  
  KKY19137.1  89 QIRYNFPyDLASKLPAYIWQTWKYTPAdggFDeSLRPFEASWSEKHPGFIHEVVN 143
                 689999989999**************74446426999999**********99964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2428.60
//
Query:       KKY19138.1  [L=849]
Description: putative response regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-20   72.8   0.0    5.3e-14   52.3   0.0    2.5  2  Response_reg     Response regulator receiver domain
  ------ inclusion threshold ------
        2.9    8.9   4.6       0.39   11.7   0.3    1.8  2  Ribosomal_L18_c  Ribosomal L18 C-terminal region
        7.3    4.4   6.3         11    3.8   6.3    1.1  1  Dicty_REP        Dictyostelium (Slime Mold) REP protein


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   8.9e-18   5.3e-14       1      83 [.     556     637 ..     556     647 .. 0.92
   2 !   17.9   0.0   4.3e-07    0.0026      70     107 ..     676     713 ..     663     718 .. 0.81

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 8.9e-18
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSH CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahsee 83 
                   vliv+D+ ++++ll+ ++++ ++ + ++a +g+ea++++k   ++l+l+Di++p m+Gle+++eir+ ++  ++ ++++  ++
    KKY19138.1 556 VLIVEDNVINLRLLEAFMRRLKV-RWKTAVNGREAVNKWKMGGFHLVLMDIQLPVMSGLEATREIRRLERVNNIGVFSSPISS 637
                   8**********************.*********************************************99999888876555 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 4.3e-07
                   TTSEEEEEESSTSHHHHHHHHHCTESEEEESSG-HHHH CS
  Response_reg  70 pelpviiltahseeedavealkagaddflsKpfdpeeL 107
                   + + v++lta s ++d++eal ag +dfl+Kp++   L
    KKY19138.1 676 SPVIVVALTASSLQSDRHEALAAGCNDFLTKPVNFVWL 713
                   567789999***********************987665 PP

>> Ribosomal_L18_c  Ribosomal L18 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   6.6e-05      0.39      41      92 ..     151     201 ..     146     203 .. 0.87
   2 ?   -4.4   0.4         3   1.8e+04      70      84 ..     762     776 ..     752     781 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.6e-05
  Ribosomal_L18_c  41 eaddleelykkahaaIredpvkkekkekkevkkeskkykkkkltleqrkarv 92 
                      e++ +ee +++a ++I+++p+  e+++++  ++ s k+ +++ tl++r++ +
       KKY19138.1 151 EVNVIEEEFEDAVEEIKQEPEV-ETRPSTATAQVSPKTPSQRPTLAERRQSI 201
                      6788*****************7.6688888888899************9987 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 3
  Ribosomal_L18_c  70 evkkeskkykkkklt 84 
                      + kk+  ++++kk t
       KKY19138.1 762 KTKKKPMSIRRKKET 776
                      334444455555555 PP

>> Dicty_REP  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   6.3    0.0019        11     248     336 ..     745     834 ..     726     846 .. 0.57

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0019
   Dicty_REP 248 qpskeknkttttttttttttsqartrkrkaiddd..klsenqakekkknskksdddpqsdfskkssrksgslkdvrvdnisdseldddvne 336
                   ++++ +  t tttt  t+++++  +rk+  ++  +ls++q+++++ n ++++   +s+      +ks + +dv+ d  s s++  ++++
  KKY19138.1 745 ATNSSTGASSTMTTTTGKTKKKPMSIRRKKETPEvrRLSDSQSQMPMLNGTGATGG-GSSKDTSEAKKSAEEEDVKDDSGSGSTSTRTKGS 834
                 33333444444445555555555555555554441144555555555555554443.4667777788999999999999985544444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (849 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       863  (0.0481343); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.50
# Mc/sec: 5132.68
//
Query:       KKY19139.1  [L=369]
Description: hypothetical protein UCRPC4_g04647 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-80  271.1   0.0    1.6e-80  270.6   0.0    1.2  1  DUF410    Protein of unknown function (DUF410)


Domain annotation for each model (and alignments):
>> DUF410  Protein of unknown function (DUF410)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.6   0.0   8.8e-85   1.6e-80       2     255 .]      29     329 ..      28     329 .. 0.97

  Alignments for each domain:
  == domain 1  score: 270.6 bits;  conditional E-value: 8.8e-85
      DUF410   2 kkydeAidllyqgalellkakqygsgaDLalllv.evyekaevevdeeskdrliellskfpaeeperkkfikaaikwSakkgekkaGdpeLhhllakll 99 
                 + +++A+d+l  ga++ll+a+q+gsg+DLal+lv +vy k e+ev++++++rl+++l+ fp eep+rk+++++++ wSa++ge ++Gdpe+hh+++++ 
  KKY19139.1  29 STFANAADILSGGAKALLQAGQGGSGGDLALMLVnDVYVKGEWEVNDANRKRLLDVLKDFPREEPTRKRYVQEIVGWSARFGEVEMGDPEIHHVVGEMH 127
                 67899********************************************************************************************** PP

      DUF410 100 lk...............................egeleeAerhlllgtddsaeelakllvewaeegeeseadlfiaRavLqylllgnvkaAnklldefl 167
                 +k                               e++ ++Aerhlllgt++s++ l  +l++w++++++++a l+++Ra+++ylllgn++ A+k+++ f+
  KKY19139.1 128 AKgwyssyflsvnrhlrlrpsflsantnssllsENNPYDAERHLLLGTSQSPNPLSTVLYTWYTADSPHTAPLYLSRAIFPYLLLGNLSSATKSYQLFT 226
                 *********************************9***************************************************************** PP

      DUF410 168 kkleskessll........te.rvfp.lpllnFlqlllltiqrkskelFkkLkekYkpslkrdps.....lkeylekIgelyFgikpprqqsnglqdmm 251
                 ++l+s++++l         ++ rvfp lpllnFl llll++q+++++lF++L ++Y+++lk+++      ++++l+ Igel+Fgi+ prq++n+l+dmm
  KKY19139.1 227 SHLTSSNPTLFtqsvssskSDmRVFPsLPLLNFLGLLLLSCQKGQRSLFTDLAKHYATHLKEKEIgetwgWNDALAGIGELWFGIRIPRQMGNPLMDMM 325
                 ********88899999864338**************************************9988788999***************************** PP

      DUF410 252 ssLl 255
                 +s++
  KKY19139.1 326 GSMF 329
                 ***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2472.65
//
Query:       KKY19140.1  [L=356]
Description: putative nuclear protein qri2 nse4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-32  110.8   0.0    8.5e-32  109.3   0.0    1.8  2  Nse4_C         Nse4 C-terminal
    3.9e-13   49.3   1.4    1.6e-12   47.3   1.4    2.1  1  Nse4-Nse3_bdg  Binding domain of Nse4/EID3 to Nse3-MAGE


Domain annotation for each model (and alignments):
>> Nse4_C  Nse4 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.71   6.4e+03      50      50 ..      99      99 ..      66     126 .. 0.44
   2 !  109.3   0.0   9.5e-36   8.5e-32       2      91 .]     253     342 ..     252     342 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.71
      Nse4_C 50 e 50
                +
  KKY19140.1 99 Q 99
                1 PP

  == domain 2  score: 109.3 bits;  conditional E-value: 9.5e-36
      Nse4_C   2 islfkfvinpksFaqtVeNlFylSfLvkdgkvkieldedglpvleeteeeeeekakeeeakkkqavlsldmetWkelieafdikepliph 91 
                 ++l++f++npksF+qtVeNlFy+SfL+k+g ++i++d++glp+l++ +++++++a+ ++++k+qav+ ld++tW++l+++f ++e+liph
  KKY19140.1 253 VPLMHFCVNPKSFGQTVENLFYVSFLIKEGAAGINFDSTGLPTLHPHQPTAPQEAQVKGVTKNQAVFALDFQTWEDLVHTFGLTESLIPH 342
                 899******************************************999999999999********************************8 PP

>> Nse4-Nse3_bdg  Binding domain of Nse4/EID3 to Nse3-MAGE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   1.4   1.8e-16   1.6e-12       1      46 [.      46      95 ..      46     129 .. 0.79

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 1.8e-16
  Nse4-Nse3_bdg  1 DSrlLvsaSelaaekarnlklg..gggfDvdeFvsklktfMggdrfe..g 46
                   DSr+Lv++ +l+++k+++l lg  ++g++vd+Fv +++ +M+    +  g
     KKY19140.1 46 DSRILVQTGDLSYKKTTQLVLGdgATGIEVDDFVFRCIAYMRSAPSDddG 95
                   9****************************************994444550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 2216.22
//
Query:       KKY19141.1  [L=919]
Description: putative phosphoinositide 3-kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-57  193.9   0.1    2.8e-57  193.1   0.1    1.3  1  PI3Ka           Phosphoinositide 3-kinase family, accessory d
    6.6e-47  160.4   0.0    2.6e-32  112.6   0.0    3.0  3  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
    1.2e-31  109.5   0.0    2.2e-31  108.6   0.0    1.4  1  PI3K_C2         Phosphoinositide 3-kinase C2
  ------ inclusion threshold ------
        0.1   11.9   0.0        0.2   11.0   0.0    1.4  1  DUF4135         Domain of unknown function (DUF4135)


Domain annotation for each model (and alignments):
>> PI3Ka  Phosphoinositide 3-kinase family, accessory domain (PIK domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.1   0.1   6.2e-61   2.8e-57       2     167 ..     374     548 ..     373     566 .. 0.93

  Alignments for each domain:
  == domain 1  score: 193.1 bits;  conditional E-value: 6.2e-61
                 -S-SSCHHHHHHHHHCHS-TTS---HHHHHHHHHTHHHHCTSGGGHHHHHTTS-SSSHHHHHHHHHHHTTSHHTTHHHHTTTTSTTS--HHHHHHHHHH CS
       PI3Ka   2 dlkpdekerdeleaiiakdPltkltaeekeliwkfryylknnkkaltklLqsvkwseesevkealelldsWaeididdaLeLLdskfkdesvreyavkv 100
                 d kp+ k rdel++i+++ P+++l+ eek+liw+fr  l++ k+altk+ +s++ws+  e+ +a+el+ +Waeid+ddaLeLL+++f ++ vr+yav +
  KKY19141.1 374 DQKPNAKLRDELNEIMSYGPTQELNGEEKDLIWRFRRHLSKDKRALTKFVKSTNWSDPGEARQAVELIPRWAEIDVDDALELLGPTFDSPVVRAYAVDR 472
                 6799*********************************************************************************************** PP

                 HHHSHHHHHHHHHHHHHHHHGGS.........SSSSSHHHHHHHHHHHHSHHHHHHHHHHHHHHHHCCTHHHHHHH CS
       PI3Ka 101 LekasdeelllYllQLVqalkye.........pikdsalaefLlkralknkrlghfffWyLkseiedkevserfks 167
                 L+ka+d+el lYllQLVqalk+e           +ds+la fL++ra++n  lg+ff WyL +e++d++ +++ ++
  KKY19141.1 473 LRKADDDELVLYLLQLVQALKFErispdsengGLDDSYLATFLVERASSNFMLGNFFHWYLMVECDDRSSESNAHR 548
                 *****************************99999*******************************88776554433 PP

>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.21   9.6e+02     207     238 ..     392     424 ..     367     428 .. 0.67
   2 !   44.0   0.0   5.1e-15   2.3e-11       2      63 ..     662     719 ..     661     726 .. 0.94
   3 !  112.6   0.0   5.7e-36   2.6e-32     110     249 ..     725     864 ..     722     865 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.21
                     STTCC.HHHHHHHHHHHHHHHHHTHHHHHHHHH CS
  PI3_PI4_kinase 207 dpskd.eglfresceealealrrdqnlltrllk 238
                     +p+++  g  +++ ++++++l++d++ lt++ k
      KKY19141.1 392 GPTQElNGEEKDLIWRFRRHLSKDKRALTKFVK 424
                     444431456678889999999999999998876 PP

  == domain 2  score: 44.0 bits;  conditional E-value: 5.1e-15
                     EEEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTE CS
  PI3_PI4_kinase   2 sagiykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvass 63 
                     +++i+k gddlrqd+l++q+++lmd +l+ken++++    l++ys++++g+ +g +++++s+
      KKY19141.1 662 YPIIFKTGDDLRQDQLVIQIISLMDRLLRKENLDLK----LTPYSILATGPIAGAVQFIPST 719
                     899********************************9....*******************986 PP

  == domain 3  score: 112.6 bits;  conditional E-value: 5.7e-36
                     HTSSTTHHHHHHHHHSSSHHHHHHH....HHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCCTCSHCSSSS-.SSSSS.S-T CS
  PI3_PI4_kinase 110 alkpksgllqeFvkkspsaeewlea....rkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGlilpdewkllpfpqekvPf.rlt 199
                     + k+k ++l ++  ++p+ +e l +    ++++ +s+a+++v++yilg+gDRhl+N+l+   sg+++hIDfG+il++++k +       P+ +l+
      KKY19141.1 725 SAKYKGSILSYLRAHNPDDKEALGVrketMDTYLKSCAGYCVITYILGVGDRHLENLLL-APSGHFFHIDFGFILGRDPKPFA------PMmKLC 812
                     6688999************8888777888******************************.********************999......899*** PP

                     HHHHHHT..STTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCSSC CS
  PI3_PI4_kinase 200 relvlai..dpskdeglfresceealealrrdqnlltrllkkavkdglilwe 249
                     +e+v+ +  ++s ++  f+++c++a+ +lr+ + l+++l++++v +++++++
      KKY19141.1 813 KEMVEGMggTNSPQYLQFKQYCFTAYTTLRKSSSLVLNLFSLMVNANIPDIK 864
                     *******9999**************************************986 PP

>> PI3K_C2  Phosphoinositide 3-kinase C2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6   0.0   4.9e-35   2.2e-31       5     140 .]      54     213 ..      51     213 .. 0.95

  Alignments for each domain:
  == domain 1  score: 108.6 bits;  conditional E-value: 4.9e-35
                 EEEEEEEECTTEESSEEE.E-S-SETT.TTTEEEEEEEEEEECCCS-TTEEEEEEEEEEEECTC....EEE-EEEEEEEESC-TTSCCGGCEEEEEECC CS
     PI3K_C2   5 lyvevqlyhggkqlclpvqstklksfsfksikwnewltfpiqisdLPrsarLvitiwevkgkeks...eeveplgwvnlsLFdkkgiLrqGkqkLklwt 100
                  yv+vql  + k+l+ ++ +t++k f+ +s +wnewl +p+ i+d+P +a+L+it+w+++  + +    +++p+g+++++LF ++g+L +G+qk k++ 
  KKY19141.1  54 HYVTVQLWADSKPLGVST-QTSYKYFK-NSRTWNEWLELPVAIKDIPQNAQLAITVWDLSPLDVQggkGHSIPFGGTTIPLFEQDGTLAKGRQKCKIYR 150
                 69*************999.*******9.******************************9876655664445**************************** PP

                 S-----SHH........................SSSCHCCCCCCCHTTSSS-CCCCHTTTCCC CS
     PI3K_C2 101 sketdgsvet.......................edelnrlekllkkyergqvekvewldrltf 140
                  +e+dgs+ t                       e el+r+ekl kk+e g++++v+wld+l f
  KKY19141.1 151 HREADGSSATttpsipkpkrrrkgrpkaeptpqELELERIEKLFKKHEMGEISRVDWLDQLVF 213
                 ********************************999*************************976 PP

>> DUF4135  Domain of unknown function (DUF4135)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.4e-05       0.2     132     177 ..     754     800 ..     745     829 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.4e-05
     DUF4135 132 verfYrraGallallyllggtDlheeNl.iasgeqpvliDlEtllth 177
                 ++ + + + +++ ++y+lg+ D h eNl +a  ++ + iD+  +l +
  KKY19141.1 754 MDTYLKSCAGYCVITYILGVGDRHLENLlLAPSGHFFHIDFGFILGR 800
                 55666778899*****************99**********9999844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (919 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.35s 00:00:01.18 Elapsed: 00:00:00.52
# Mc/sec: 5315.43
//
Query:       KKY19142.1  [L=573]
Description: putative ubiquitin-protein ligase molybdopterin-converting factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-40  137.4   0.0    9.7e-40  136.4   0.0    1.4  1  ThiF             ThiF family
    0.00062   20.0   0.2       0.35   11.1   0.1    2.5  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
  ------ inclusion threshold ------
      0.012   15.9   0.0      0.029   14.6   0.0    1.7  1  TrkA_N           TrkA-N domain
      0.017   14.7   0.0      0.052   13.1   0.1    1.8  2  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
      0.083   12.2   0.6       0.33   10.2   0.0    2.0  2  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
       0.15   11.2   0.0       0.23   10.6   0.0    1.2  1  Tubulin_2        Tubulin like


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.4   0.0   3.2e-43   9.7e-40       5     209 ..     140     412 ..     134     444 .. 0.78

  Alignments for each domain:
  == domain 1  score: 136.4 bits;  conditional E-value: 3.2e-43
                 HHHHHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-C...... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...... RF
        ThiF   5 lallgedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteri...... 97 
                  ++l ++g+ek+++s v ++G+Gg+Gs ++++La+sGv++++l+D+D++ ls lnR+ l++ +d+G+pK+ +++++l++i p+v+    +e        
  KKY19142.1 140 SSFLTPAGLEKVKNSFVIVIGLGGVGSHAVTALARSGVSHIRLIDFDQVTLSSLNRHALATLADVGTPKVHCVRKRLEQIVPWVHFDCRNELYsseaaa 238
                 566788************************************************************************************999777777 PP

                 ............CGCC.S-HHHHTT-.SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEE.EE.....CCS-ECTSS-............ CS
                 ............xxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.....xxxxxxxxxx............ RF
        ThiF  98 ............tdet.vleellesv.DlVvdalDniearrlvnracvkkgiplieagtlgfegqvvvi.ip.....gktgcyeCld............ 164
                             t  +   ++++ +  D+V+d++Dni++++++ ++c++++ip+i+++ +g++++ + i i       +++  + ++            
  KKY19142.1 239 tllhpwsldttsT--SsTGDDFVGHKpDFVLDCIDNISSKVALLHYCHNHSIPVISSMGAGCKSDPTRIsIGdisasIEDPLSRSTRrrlkllgvqsgi 335
                 7777777665321..124666665557******************************************743222334444444444666666655554 PP

                 T..GGS.EECCCCEEHHH...........HHHCT...........E-B-HHHHHHHHHHHHHHHHHHH...........T CS
                 x..xxxxxxxxxxxxxxx...........xxxxx...........xxxxxxxxxxxxxxxxxxxxxxx...........x RF
        ThiF 165 p..sstedptekkvplct...........siagn...........ipaiatttavvaglaalellkll...........s 209
                 p  +ste+p + k+ l+            +               +p+++t++a+++  +a+ ++  +            
  KKY19142.1 336 PvvFSTEKPAPGKAALLPldeeefqkgtvG---DlgvlpdfrvriLPVLGTMPAIFGYSLANYVICKIsgypidfisgaR 412
                 267889999999988888999999996661...3444555666679****************999888444444444443 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00012      0.35       1      38 [.     156     191 ..     156     223 .. 0.85
   2 !    6.4   0.0    0.0034        10      54      97 ..     246     291 ..     226     307 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskekle 38 
                      v++iG G+vG+ ++  lar++    +i ++d+++  l 
       KKY19142.1 156 VIVIGLGGVGSHAVTALARSGVS--HIRLIDFDQVTLS 191
                      79******************988..9999999876655 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0034
                      --TTTHHHHHHHHHTTS.SEEEE-SSGG.GHHHHHHHHHHHT-EEE CS
  Sacchrp_dh_NADP  54 ldaenyeavLaallkeg.dlvvnlsppi.ssldvlkaCietgvhyv 97 
                      ld    +++ +  + ++ d+v++++ +i s  ++l +C+ + + ++
       KKY19142.1 246 LDTTSTSSTGDDFVGHKpDFVLDCIDNIsSKVALLHYCHNHSIPVI 291
                      566666666677778888**********7777********988776 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   9.6e-06     0.029       1      42 [.     156     198 ..     156     209 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 9.6e-06
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTS CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreegl 42 
                 +i+iGlG vG++ +  L + g +++ +id d+ ++ +l ++ l
  KKY19142.1 156 VIVIGLGGVGSHAVTALARsGVSHIRLIDFDQVTLSSLNRHAL 198
                 79*****************55578*********9999988765 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.7e-05     0.052       3      44 ..     156     198 ..     154     213 .. 0.92
   2 ?   -2.8   0.0       1.4   4.1e+03     146     180 ..     501     535 ..     487     539 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.7e-05
                     EEEE--STTHHHHHHHHHHCT.SEEEEE-S-HHHHHHHCTTS- CS
  UDPG_MGDP_dh_N   3 isviGlGYvGlvtaavlaeig.hevigvDideekvdklnsgki 44 
                     + viGlG vG    ++la+ g  ++ ++D d+ + ++ln+  +
      KKY19142.1 156 VIVIGLGGVGSHAVTALARSGvSHIRLIDFDQVTLSSLNRHAL 198
                     679******************88999*************9876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.4
                     CEEEEE------TTSHHHHHHS-S-EEEEESSCHH CS
  UDPG_MGDP_dh_N 146 dfdvvsnPEflregsavkdllnpdrvviGveekka 180
                     d++   nP     g+   dl  +d v++  ee ++
      KKY19142.1 501 DYGFGANPDWESQGQKSVDLKLKDLVLMTKEEASK 535
                     56667899999999999999999999988777665 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3      0.22   6.7e+02      28      82 ..      16      72 ..       9      91 .. 0.66
   2 ?   10.2   0.0   0.00011      0.33      19      69 ..     144     195 ..     131     227 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.22
                 --EEEEESTSHHHHHHHHH.HHHTT-EEEEEESSHHHHHHHHH.TTTCECEEHCHHH CS
  AlaDh_PNT_C 28 pakvlviGgGvaGlqAiat.akglgakVtvlDvrparleqles.lgakfvevlksqe 82
                  ++  v+G+ vaG++ ++  a++ + +V +l  ++ +le+ ++  +++  +v++++ 
   KKY19142.1 16 IGTAAVVGALVAGTAILSFqAAARQERVAALKRSIPTLEEEDAnEESRHTDVRMKKP 72
                 567789999999998766425555677888888888888777644444444544444 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00011
                  TTCEETCB---EEEEESTSHHHHHHHHHHHHTT.-EEEEEESSHHHHHHHHH CS
  AlaDh_PNT_C  19 laGgvpgvepakvlviGgGvaGlqAiatakglg.akVtvlDvrparleqles 69 
                    +g++ v+++ v+viG G +G +A+ + ++ g  +++++D ++ +l  l+ 
   KKY19142.1 144 TPAGLEKVKNSFVIVIGLGGVGSHAVTALARSGvSHIRLIDFDQVTLSSLNR 195
                  556778899*****************87776662689999999999988876 PP

>> Tubulin_2  Tubulin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   7.7e-05      0.23       1      42 [.     157     229 ..     157     253 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.7e-05
   Tubulin_2   1 lviGLGGtGgkvlaelrrrlreel...............................gslelpdkvqFlyiDtde 42 
                 +viGLGG+G+ ++++l+r+ ++ +                                +++l+++v  +++D  +
  KKY19142.1 157 IVIGLGGVGSHAVTALARSGVSHIrlidfdqvtlsslnrhalatladvgtpkvhcVRKRLEQIVPWVHFDCRN 229
                 89*****************999998888888888888888888888888888888778888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 3648.24
//
Query:       KKY19143.1  [L=156]
Description: putative ssdna binding [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-20   72.4   0.0    3.2e-20   72.1   0.0    1.1  1  SSB       Single-strand binding protein family


Domain annotation for each model (and alignments):
>> SSB  Single-strand binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   1.8e-24   3.2e-20       2     103 ..      39     143 ..      38     144 .. 0.93

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 1.8e-24
                 CEEEEEEEESSS-EEEEETTSEEEEEEEEEEEEEEEETTCCEEEEEEEEEEEEEHH.HHHHHHHH...--TT-EEEEEEEEEEEEEECTT.SCEEEEEE CS
         SSB   2 nkvilvGrlgkdpelrqtesGnavarftlatnrrfkdqegekdeetewhrvvvfgk.laevvaey...lkkGslvyveGrlqtrkyedqe.gqkryste 95 
                 +k++l+Grl++ p+l++t sG++++r++l ++   +d  + ++++t+w+r++ f+    +++ ey   l+kG+lvyveG+ +++ y+d+e g++ ++++
  KKY19143.1  39 SKITLIGRLAAAPDLHTTTSGAEYIRYSLGVSTGPRD--ESGQQATSWFRIANFNTqEGSRAREYllgLEKGTLVYVEGDASMNVYQDKEtGKNVSALN 135
                 79*******************************7777..999**************999*****944459***************************** PP

                 EEEEEEEE CS
         SSB  96 ivaeevqf 103
                 iv++++++
  KKY19143.1 136 IVQKSLEV 143
                 **998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1239.86
//
Query:       KKY19144.1  [L=469]
Description: putative serine threonine protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-55  187.5   0.0    3.9e-55  187.1   0.0    1.2  1  Pkinase          Protein kinase domain
    5.3e-28   98.0   0.2    1.3e-26   93.5   0.1    2.5  2  Pkinase_Tyr      Protein tyrosine kinase
     0.0017   17.7   0.0     0.0052   16.1   0.0    1.9  1  Kinase-like      Kinase-like
  ------ inclusion threshold ------
      0.015   15.0   0.6        0.6    9.7   0.1    2.2  2  FTA2             Kinetochore Sim4 complex subunit FTA2
      0.047   12.5   1.3       0.71    8.6   0.1    2.1  2  Pkinase_fungal   Fungal protein kinase
       0.14   12.7   7.7       0.32   11.5   3.1    2.5  2  Caskin-Pro-rich  Proline rich region of Caskin proteins


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.1   0.0   1.3e-58   3.9e-55       4     263 ..     111     404 ..     109     405 .. 0.88

  Alignments for each domain:
  == domain 1  score: 187.1 bits;  conditional E-value: 1.3e-58
                 EEEEEEESSEEEEEEEE..TTTTEEEEEEEEECHCHCHHHH...HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--H CS
     Pkinase   4 leklGeGsfGkVykave..ketgkivAvKkikkekakkkke...kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslse 97 
                  +++G+G++++V  +++  +++g+++AvK++++++ak++++   kkv +E +i ++l+hpniv+ ++ ++++ +   v+ey+++gel+ l++ +g l+ 
  KKY19144.1 111 GKEVGKGASSTVKVMYRkgQDKGRQYAVKEFRRRNAKETEDeyvKKVKSEYSIAHSLHHPNIVETIRLCTHSGRWNHVMEYCQQGELFALVQ-RGYLKY 208
                 689********9777662257899**************99999************************************************7.699*** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS...................BCTTTSCGGGS-HHHH.TTSCB.S CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk...................ltsfvgtseYlAPEvl.keney.s 175
                 e+ + ++kq+l+g++ylHs+gi HrD+K eN+L++++g +KitDFG+++ +  +++                   +  ++g+  Y+APEvl k+ +y  
  KKY19144.1 209 EDHNCFFKQLLRGVAYLHSHGIAHRDIKLENLLMNDEGYIKITDFGVSEVFCGEHPalrtsggecgvnmqgcrrcKPGICGSLPYIAPEVLaKKGDYdP 307
                 ***************************************************999999****************99999*************87788868 PP

                 HHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS............-HHHHHHHHHHT-SSGCCSTTHHHHHTSG CS
     Pkinase 176 kkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei............seeakdllkkllkkdpkkRltaeellqhp 262
                 ++ DvWs++++ ++l+ + +p+++ +    ++ +++q+ +  + +  ++ + p +++             ++++k+ll k+l+ dp+kR t++e+l+++
  KKY19144.1 308 RPLDVWSCAIVYLTLFHKGNPWPSADM---ANPNYRQFAEGWDAFLAKTPDGPIDENNyprcgpvmsklpNQSLKRLLLKMLHPDPEKRATIHEALNDK 403
                 89*********************5444...4566666433333333333333433333456777799999***************************99 PP

                 G CS
     Pkinase 263 y 263
                 +
  KKY19144.1 404 F 404
                 8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.1   4.3e-30   1.3e-26       4     213 ..     111     338 ..     109     354 .. 0.78
   2 ?   -1.4   0.0      0.39   1.2e+03     231     254 ..     375     398 ..     367     402 .. 0.84

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 4.3e-30
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH....HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee....keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  gk++G+Ga ++V   + k   ++k  + avK +++++ +e+     +++ +e++i ++l+hpniv+ + +ct++++   v+ey+++G+L   +++   
   KKY19144.1 111 GKEVGKGASSTVKVMYRK--GQDKGRQYAVKEFRRRNAKETedeyVKKVKSEYSIAHSLHHPNIVETIRLCTHSGRWNHVMEYCQQGELFALVQRG-- 204
                  6899*******9888777..8889999*****9643333321224778889***************************************999987.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE................EETTSSTSGGGGS-HHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey................vkkeeaklpvkWmapEslke 179
                    l+++d  +f  q+ +G++yL+s+ + Hrd+   N L++++  +ki+DfG+++    ++                  + k +   ++ ++apE+l +
   KKY19144.1 205 -YLKYEDHNCFFKQLLRGVAYLHSHGIAHRDIKLENLLMNDEGYIKITDFGVSEVFCGEHPAlrtsggecgvnmqgcrRCKPGICGSLPYIAPEVLAK 301
                  .9***************************************************98844433323222333321111111222222457899****988 PP

                  SE.EEHH.HHHHHHHHHHHHHHTTSS.GTTTTSHHHH CS
  Pkinase_Tyr 180 kk.ftsk.sDvWsfGvllwEiftlge.spypglknee 213
                  k  +  +  DvWs +++   +f +g+  p +++ n +
   KKY19144.1 302 KGdYDPRpLDVWSCAIVYLTLFHKGNpWPSADMANPN 338
                  765665427*************999744666666655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.39
                  BHHHHHHHHHHT-SSGGGS--HHH CS
  Pkinase_Tyr 231 peelyelmkkcweedpeeRptfse 254
                  +++l++l+ k ++ dpe+R+t++e
   KKY19144.1 375 NQSLKRLLLKMLHPDPEKRATIHE 398
                  4789999************99887 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.7e-06    0.0052     152     189 ..     217     254 ..     203     393 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.7e-06
  Kinase-like 152 qlirlaanLqakglvhgkftvdnllldekgglmlggft 189
                  ql+r +a+L+++g+ h +++ +nll++ +g +++++f+
   KKY19144.1 217 QLLRGVAYLHSHGIAHRDIKLENLLMNDEGYIKITDFG 254
                  8999********************************96 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.3     0.013        40      43      75 ..     131     163 ..     108     175 .. 0.65
   2 ?    9.7   0.1    0.0002       0.6     157     205 ..     197     242 ..     155     256 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.013
        FTA2  43 irgkeYALKlFrfleaeeleeaeedlkipreal 75 
                  +g++YA+K Fr  +a+e+e+++ ++ +++ ++
  KKY19144.1 131 DKGRQYAVKEFRRRNAKETEDEYVKKVKSEYSI 163
                 35679********99998886555555544444 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0002
        FTA2 157 iraIVKelellkeqeelevsqlpkllrdlkklhklgIvvrDlkeenyid 205
                 + a+V+  +l++e+++     +++llr +  lh++gI +rD+k en++ 
  KKY19144.1 197 LFALVQRGYLKYEDHN---CFFKQLLRGVAYLHSHGIAHRDIKLENLLM 242
                 5555555444444443...46889*********************9874 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2     0.016        47     165     213 ..     128     174 ..     117     196 .. 0.80
   2 ?    8.6   0.1   0.00024      0.71     316     343 ..     219     245 ..     212     255 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.016
  Pkinase_fungal 165 kegergkeyvvKdsWrdaerksEaelLkkaeergvegvarlvahedvee 213
                     k +++g +y vK   r + +++E e+ kk+  ++   +a  ++h ++ e
      KKY19144.1 128 KGQDKGRQYAVKEFRRRNAKETEDEYVKKV--KSEYSIAHSLHHPNIVE 174
                     33344678**********************..88999999999999863 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00024
  Pkinase_fungal 316 IkghrsLflkagiLHrDiSenNilitds 343
                     ++g   L+   gi HrDi  +N+l++d+
      KKY19144.1 219 LRGVAYLH-SHGIAHRDIKLENLLMNDE 245
                     56677799.99***************86 PP

>> Caskin-Pro-rich  Proline rich region of Caskin proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   3.1   0.00011      0.32      44      89 ..       8      55 ..       1      57 [. 0.65
   2 ?    3.0   0.1     0.051   1.5e+02      39      80 ..     418     454 ..     376     458 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
  Caskin-Pro-rich 44 sqlvraqaaaeknvnRsqsfavRarkkG..PPPPPPkRlssvssssss 89
                     s+++++ ++ +++   s  f +R++ kG   PP PP+ +s   +ssss
       KKY19144.1  8 STSQQELKSLDRGQRSSTGFTMREKSKGlfVPPQPPRASSFNLQSSSS 55
                     4444555556666666999*********54477777666666666555 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.051
  Caskin-Pro-rich  39 rrpgRsqlvraqaaaeknvnRsqsfavRarkkGPPPPPPkRl 80 
                       +pgR+       aa k+  ++ s  v ++k    PPP kRl
       KKY19144.1 418 EKPGRG-----IDAAGKESCKAASKMVVQKKHNHIPPPVKRL 454
                      555555.....2234556667788889999999999****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 2969.99
//
Query:       KKY19145.1  [L=380]
Description: putative sporulation-regulated protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   8.9e-108  359.8   0.0   1.6e-107  358.9   0.0    1.4  2  Septin          Septin
    5.4e-05   23.3   0.0    0.00013   22.0   0.0    1.7  1  MMR_HSR1        50S ribosome-binding GTPase
     0.0093   15.5   0.1       0.73    9.3   0.0    2.4  2  GTP_EFTU        Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
      0.012   15.7   5.3        1.5    8.8   0.0    3.1  3  Dynamin_N       Dynamin family
      0.016   15.1   3.9      0.024   14.6   0.5    2.7  3  RsgA_GTPase     RsgA GTPase
       0.14   12.5   0.6       0.42   10.9   0.0    2.0  2  AAA_22          AAA domain
       0.15   12.6   7.1         16    5.9   0.0    2.2  2  AAA_23          AAA domain
       0.37   11.1   4.5        3.5    8.0   1.3    2.7  2  EB1             EB1-like C-terminal motif
        1.8    8.5   5.5        4.3    7.3   5.5    1.6  1  Ribosomal_S17e  Ribosomal S17


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.9   0.0  8.3e-111  1.6e-107       1     275 [.      18     296 ..      18     301 .. 0.96
   2 ?   -3.6   0.2       2.6   5.1e+03      49     137 ..     337     341 ..     314     359 .. 0.50

  Alignments for each domain:
  == domain 1  score: 358.9 bits;  conditional E-value: 8.3e-111
                 XEEEEEEEEEEBTTSSCCCCCCTTSSSS------------.------S-E..EEEEEEEETTCEEEEEEEE---BSSSSSHHCCCHHHHHHHHHHHHHH CS
      Septin   1 kgieftlmvvGesglGkttlintlfetdlieeekleease.kkkktveik..kkkvvieedgvklnltviDtpgfGdavdnskswepiveyideqfeey 96 
                 kgi+f lmv+G+sg+G+tt++ntl+ +++ + +  +++++ + ++ v+ik  + + +++e+g+++ lt++DtpgfGd++dn+ ++  iv y+++q++++
  KKY19145.1  18 KGIQFCLMVCGASGTGRTTFVNTLCGKKVLQGKDSDDPENaHLEEGVRIKpvTVELELDEEGTRISLTIVDTPGFGDQIDNEAAFGEIVGYLEHQYDDI 116
                 79******************************99999988788999***944445567899************************************** PP

                 HHHCTSS--.SS-----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT--------SSSS-SCCHHHH CS
      Septin  97 lreesklkR.kkivDkRvHaclyfisPtghglkpldvelmkklsekvnliPviaKaDtltkeElkefKkkireeleeeeikiyklpdeeededeeakel 194
                 l ees++kR  ++ D+RvHa+lyfi+Ptghgl++ld+elmk+ls +vn+iPvi+KaD+lt  El e Kk ++e++e++ i++y++p   e++de+++e+
  KKY19145.1 117 LAEESRIKRnPRFRDNRVHALLYFITPTGHGLRELDIELMKRLSPRVNVIPVIGKADSLTPAELAESKKLVMEDIEHYRIPVYNFPYDIEEDDEDTVEE 215
                 *********999************************************************************************877777778999*** PP

                 HHHHHHC-SEEB-SSSSEEEESSSEEEEEEETTEEEETT-TTT-SCCHHHHHHHHHCHHHHHHHHHHTHHHHHHHHHH-XX CS
      Septin 195 seklkeslPfaivgsneliekkgkkvrgRkypWGvvevenekhsdFlkLrklllkthledLkevteellYetyRseklskl 275
                 + +l+  +Pfaivgs+++ie  g++vr+R+ypWG+vev+n++hsdFl++r++ll++hl dLke+t++ lYe+yR+eklsk+
  KKY19145.1 216 NAELRGLMPFAIVGSEDVIEVGGRRVRARQYPWGIVEVDNPRHSDFLAIRSALLHSHLADLKEITHDFLYENYRTEKLSKS 296
                 ******************************************************************************986 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.6
                 EEEEEEEEETTCEEEEEEEE---BSSSSSHHCCCHHHHHHHHHHHHHHHHHCTSS--SS-----EEEEEEEE-TTSSSS-HHHHHHHHH CS
      Septin  49 kkkkvvieedgvklnltviDtpgfGdavdnskswepiveyideqfeeylreesklkRkkivDkRvHaclyfisPtghglkpldvelmkk 137
                 k                                                                                    + ++
  KKY19145.1 337 K------------------------------------------------------------------------------------VQRE 341
                 2....................................................................................2222 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   6.7e-08   0.00013       3     100 ..      25     158 ..      23     171 .. 0.54

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 6.7e-08
                 EEEESTTSSHHHHHHHHHTS...TEEESSSTTSSSSEEEEEEE..........ETT..EEEEEEECGGC.......................SSHHHHH CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge...kaivsdkpgtTrdinegrvk..........lkg..keielvDtpGl.......................iegasee 63 
                 ++ G + +G +t++n+l+g+   + + sd p      +  r+k          + g   ++++vDtpG+                       i  a+e+
  KKY19145.1  25 MVCGASGTGRTTFVNTLCGKkvlQGKDSDDPENAHLEEGVRIKpvtveleldeE-GtrISLTIVDTPGFgdqidneaafgeivgylehqyddI-LAEES 121
                 789***************973332355555544444444444433333334431.223669*******7666666666665555433332221.12222 PP

                 HHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHHHH CS
    MMR_HSR1  64 kglgkaflaleeadlillvvdaseeklkpldeeleel 100
                 +  ++   + ++++++l+ +  + ++l++ld el + 
  KKY19145.1 122 RIKRNPRFRDNRVHALLYFITPTGHGLRELDIELMKR 158
                 2222222234446666666654445566666666555 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00037      0.73       7      82 ..      25      94 ..      21     102 .. 0.78
   2 ?    2.9   0.0     0.034        67     121     153 ..     161     194 ..     153     228 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00037
                EEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE..TTCSSEEEEEEEESSSGG CS
    GTP_EFTU  7 giighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle..ketkkylinliDtPGHvd 82
                +++g   +G tT++ +L  k+    k   +       D  ++  e g+ ik  +++le  +e+++  ++++DtPG  d
  KKY19145.1 25 MVCGASGTGRTTFVNTLCGKKVLQGK---DS-----DDPENAHLEEGVRIKPVTVELEldEEGTRISLTIVDTPGFGD 94
                68899999999999999844444333...33.....3778888899999999999999766999***********766 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.034
                 TTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHH CS
    GTP_EFTU 121 egvpiivfiNKmDrl.kaelkeiveevkqklsrk 153
                  +v++i +i K+D l  ael e+++ v +++++ 
  KKY19145.1 161 PRVNVIPVIGKADSLtPAELAESKKLVMEDIEHY 194
                 5899***********8889999888888777444 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00076       1.5       2      25 ..      25      48 ..      24      57 .. 0.92
   2 ?    7.6   0.0    0.0018       3.5      95     118 ..      76      99 ..      48     119 .. 0.69
   3 ?   -0.5   1.1      0.56   1.1e+03      58      82 ..     322     348 ..     288     375 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00076
                EEEEBTTTTHHHHHHHHHTS--S- CS
   Dynamin_N  2 avvGsqSsGKSSvlnaLlgedilp 25
                +v+G+   G ++++n L+g+++l 
  KKY19145.1 25 MVCGASGTGRTTFVNTLCGKKVLQ 48
                8********************985 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0018
                 EEETTS-SEEEEE---B-SSSGTT CS
   Dynamin_N  95 ilsllvkgltlvDlPGldsvnkrd 118
                 + + ++  lt+vD+PG+ ++ +++
  KKY19145.1  76 DEEGTRISLTIVDTPGFGDQIDNE 99 
                 55667789*********8876665 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.56
                 E..T-EB--CHHHHHHHHHHHHHHHTS CS
   Dynamin_N  58 k..ekkledfsevreeieketekiaga 82 
                 +  ++++e++ e++ ++++e +++ ++
  KKY19145.1 322 EqlRREEEKLREIELKVQREINEKRQE 348
                 223333333333333333333333222 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.5   1.2e-05     0.024     101     161 ..      23      92 ..       4      96 .. 0.67
   2 ?   -0.2   0.0      0.41   8.2e+02      39      73 ..     155     192 ..     143     220 .. 0.69
   3 ?   -3.0   0.1       2.9   5.9e+03      64      88 ..     323     347 ..     311     363 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.2e-05
                  EEEEECSTTSSHHHHHHHHCTT-----S--....------------SEEEEEETT.....TEEEESS-SS CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelelktgev....seklgrGkhTTtavellelae.....gglliDtPGf 161
                  + +++G SG G++t++n+l +++ l+ ++      ++l++G      +  lel+e     + +++DtPGf
   KKY19145.1  23 CLMVCGASGTGRTTFVNTLCGKKVLQGKDSddpeNAHLEEGVRIKPVTVELELDEegtriSLTIVDTPGF 92 
                  56789****************9877766541111346677766555555555555222333468888888 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.41
                  HHHHHHTT-EEEEEEE-GGG--HHH...HHHHHHHHHH CS
  RsgA_GTPase  39 LvlaeekgiepvivlnKiDlleeee...eleelkeele 73 
                  L+   + +++++ v+ K+D l+ +e   + + ++e++e
   KKY19145.1 155 LMKRLSPRVNVIPVIGKADSLTPAElaeSKKLVMEDIE 192
                  66666778999999*****9999994432333333333 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.9
                  HHHHHHHHHHHTTSEEEE--TTTHT CS
  RsgA_GTPase  64 eleelkeelealgyevllvsaktke 88 
                  +l++ +e+l++++++v    +++++
   KKY19145.1 323 QLRREEEKLREIELKVQREINEKRQ 347
                  4667777777777776544333333 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00021      0.42       7      29 ..      23      45 ..      20      87 .. 0.79
   2 ?   -1.9   0.1       1.9   3.8e+03      76      90 ..     332     346 ..     288     372 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00021
      AAA_22  7 ilvvtGesGtGKTtllrrlleql 29
                +l+v+G sGtG+Tt +++l  ++
  KKY19145.1 23 CLMVCGASGTGRTTFVNTLCGKK 45
                89*************99986665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.9
      AAA_22  76 eellealeqalrara 90 
                 +e+  ++++ +++++
  KKY19145.1 332 REIELKVQREINEKR 346
                 222222333322222 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0079        16      24      78 ..      26      85 ..      18     219 .. 0.78
   2 ?    4.8   7.2     0.018        36     114     186 ..     290     364 ..     258     377 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0079
      AAA_23 24 ItGpNGaGKTTildAikl..aLygetprlsrks..grgfeksdveiese.gkvkayvelt 78
                ++G  G+G TT+++ ++   +L g+ ++ + +   ++g     v++e e ++  + ++lt
  KKY19145.1 26 VCGASGTGRTTFVNTLCGkkVLQGKDSDDPENAhlEEGVRIKPVTVELElDEEGTRISLT 85
                79***************7669999988888777775555555555555422223335555 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.018
      AAA_23 114 ideleqfisellgskkiilnlilflgqerfeefelkdkkerleelekeleeledekk..llekleqekekekele 186
                 +++l + ++  +g + +i++  l  ++ r +e++l +++e+l+e+e + + + +ek+  ll ++ q+ e e++ +
  KKY19145.1 290 TEKLSKSVDGAMGTDSSINPEDLASQSVRLKEEQLRREEEKLREIELKVQREINEKRqeLLARESQLREIEARMQ 364
                 355555566677777777777777777777777777777777777666544433332124444445555554333 PP

>> EB1  EB1-like C-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.3    0.0017       3.5      10      30 ..     329     348 ..     329     352 .. 0.74
   2 ?    3.2   0.1     0.052     1e+02      10      26 ..     354     369 ..     354     378 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHHHTT----HHH CS
         EB1  10 sKLRdIEilcqtepeleedlp 30 
                 +KLR+IE+ +q+ + +e+ ++
  KKY19145.1 329 EKLREIELKVQR-EINEKRQE 348
                 6**********9.55554555 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.052
                 HHHHHHHHHHHHTT--- CS
         EB1  10 sKLRdIEilcqtepele 26 
                 s LR+IE  +q+ ++  
  KKY19145.1 354 SQLREIEARMQR-EASS 369
                 57********99.3322 PP

>> Ribosomal_S17e  Ribosomal S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   5.5    0.0021       4.3      61     106 ..     326     371 ..     321     379 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0021
                     TTSS--SS---HHHHHHHHHHH-----------------HHHHHHH CS
  Ribosomal_S17e  61 iqkgpvrgislklqeeererrdnyvpevsaldqeaievdkdtkeml 106
                      ++++ r i lk+q+e  e+r++    +s+l + +++++++++   
      KKY19145.1 326 REEEKLREIELKVQREINEKRQELLARESQLREIEARMQREASSQQ 371
                     578999*************************998888888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1378  (0.0768587); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 2497.74
//
Query:       KKY19180.1  [L=289]
Description: putative tam domain methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-14   52.3   0.0    8.6e-14   51.7   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    2.8e-09   37.6   0.0    1.3e-08   35.4   0.0    2.1  2  Methyltransf_25  Methyltransferase domain
    4.6e-08   33.0   0.0    7.6e-08   32.3   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
    2.5e-06   27.0   0.0    7.9e-06   25.4   0.0    1.7  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    1.9e-05   25.3   0.0    8.2e-05   23.3   0.0    2.1  2  Methyltransf_12  Methyltransferase domain
    4.4e-05   24.0   0.0    9.2e-05   23.0   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
     0.0014   18.1   0.0     0.0039   16.7   0.0    1.6  1  Methyltransf_4   Putative methyltransferase
     0.0042   16.7   0.0      0.013   15.1   0.0    1.7  2  MTS              Methyltransferase small domain
     0.0057   16.8   0.0     0.0098   16.0   0.0    1.3  1  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
       0.16   11.3   0.0       0.31   10.3   0.0    1.5  1  Methyltransf_2   O-methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   4.8e-17   8.6e-14      24     138 ..      20     155 ..       6     172 .. 0.80

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 4.8e-17
  Methyltransf_23  24 grvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatllkpgGyl 115
                       r+LdiGcG G ++  + +++   ++t++D+ p ++     +++ ++ + d++e+++    f +I+lr++ + + d+    rq++++l+pgG l
       KKY19180.1  20 DRILDIGCGPGDWAIQMGRRFPssDITAIDIGPFDITPSCIPSNVHFLMDDAEEEWYYPSPFSYIHLRFMSGAFSDWSYIYRQAYRNLRPGGIL 113
                      59***************6665558999999999888877789999************************************************* PP

  Methyltransf_23 116 llseplasl...................kedrllldwlylvp 138
                      ++++++ +                    + + ++   +y+++
       KKY19180.1 114 EILDWDYDIcnwpgvesqsfdyfsifgqAVTTSASTSGYPRN 155
                      ****98665666665555555555555445555555555555 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   7.1e-12   1.3e-08       1      97 []      22     111 ..      22     111 .. 0.88
   2 ?   -2.0   0.0       3.4   6.2e+03      54      73 ..     121     141 ..     119     149 .. 0.74

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 7.1e-12
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      +Ld+GcG+G++++++ +r++++++t++Di +  +    + +    + nv+f+  dae+  +  + f +++++++   +s  d+  ++++++r L
       KKY19180.1  22 ILDIGCGPGDWAIQMGRRFPSSDITAIDIGPFDIT--PSCI----PsNVHFLMDDAEEEWYYPSPFSYIHLRFMSGAFS--DWSYIYRQAYRNL 107
                      8******************99********996655..5555....339********88777778*******98877787..99*********** PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      +pgG
       KKY19180.1 108 RPGG 111
                      ***9 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.4
                      BCCGBS.SSTTTEEEEEEEST CS
  Methyltransf_25  54 daedlp.fedgsfDlvvssga 73 
                      d+ ++p  e++sfD+  ++g+
       KKY19180.1 121 DICNWPgVESQSFDYFSIFGQ 141
                      67778856999***9888655 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   4.2e-11   7.6e-08       5     113 ..      20     119 ..      16     152 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 4.2e-11
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeie 98 
                       r+lD+GCG G+ ++++  + +p ++++ iDi ++ i+ +         +nv+F   d+ee    + +++f +i+ +    a++d   i++++ 
       KKY19180.1  20 DRILDIGCGPGDWAIQMG-RRFPSSDITAIDIGPFDITPSCI------PSNVHFLMDDAEEEW--YYPSPFSYIHLRFMSGAFSDWSYIYRQAY 104
                      589***************.7799*****************99......79***********77..888********9888************** PP

  Methyltransf_31  99 rvlkpggilliedpr 113
                      r+l+pggil i d +
       KKY19180.1 105 RNLRPGGILEILDWD 119
                      ********9888776 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   4.4e-09   7.9e-06      49     222 ..      20     180 ..      10     189 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 4.4e-09
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHH CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrv 142
                       ++lD+ +G gD+a+++ +    + +++ +Di +  +            +n++fl+ +aee  +    f ++ + f    ++D +   ++ayr 
       KKY19180.1  20 DRILDIGCGPGDWAIQMGRRFP-SSDITAIDIGPFDIT--PS----CIPSNVHFLMDDAEEEWYYPSPFSYIHLRFMSGAFSDWSYIYRQAYRN 106
                      489**************99986.558999999875433..22....33469******************************************* PP

                      EEEEEEEEEEEE----SHHHHHHHHHHHH.HHHHHHHHHHS-HHHHHHHHHHHHHS--HHHHHHHHHHTTEEEEEEEEEG CS
  Ubie_methyltran 143 lkpGGrlvvlefskvelpllsqayelyskevlPvlGkllakdldsyryLvesirafPdqetlkeliedaGfksveyeslt 222
                      l+pGG+l +l+    +++   +  + + +  +  +G+ +  ++    y  ++ +  P   +lk     aGfks++ + +t
       KKY19180.1 107 LRPGGILEILDWDYDICNWPGVESQSFDY--FSIFGQAVTTSASTSGYPRNTTHLSPPFTDLK----SAGFKSITRQTIT 180
                      **********9988877665554444444..55688888888877778777777777766654....4777777666665 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   4.6e-08   8.2e-05       1      99 []      23     113 ..      23     113 .. 0.87
   2 ?   -3.4   0.2       9.4   1.7e+04      37      52 ..     256     271 ..     252     281 .. 0.42

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 4.6e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg..ssfDlvvasnvlhhlkdirevldnirkl 92 
                      L+iGcG G+ +  + +++p +++t++Di p  i      + + ++ n++++  +a++         s f ++++ +   ++ d+  + +++++ 
       KKY19180.1  23 LDIGCGPGDWAIQMGRRFPSSDITAIDIGPFDI------TPSCIPSNVHFLMDDAEEEW----YypSPFSYIHLRFMSGAFSDWSYIYRQAYRN 106
                      8********************************......77877766555555555533....2357*************************** PP

  Methyltransf_12  93 LkpgGrl 99 
                      L+pgG+l
       KKY19180.1 107 LRPGGIL 113
                      *****87 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.4
  Methyltransf_12  37 keklakrennnnnnve 52 
                      k++  ++e+++n++ e
       KKY19180.1 256 KKEDDDNEDDDNKVEE 271
                      3333333333333322 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   5.1e-08   9.2e-05       1      95 [.      23     114 ..      23     115 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 5.1e-08
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgG 92 
                      Ld+GcG G  a ++ +r+  ++++++D+ +  +    ++++ +   v f+  dae+  +  + f  + ++++   + d++ + ++++R L+pgG
       KKY19180.1  23 LDIGCGPGDWAIQMGRRFpsSDITAIDIGPFDI--TPSCIPSN---VHFLMDDAEEEWYYPSPFSYIHLRFMSGAFSDWSYIYRQAYRNLRPGG 111
                      8**************9999*********99999..33445444...89*******9767777******************************** PP

                      EEE CS
  Methyltransf_11  93 llv 95 
                      +l 
       KKY19180.1 112 ILE 114
                      985 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.2e-06    0.0039       5      33 ..      22      50 ..      20      56 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.2e-06
                    EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4  5 vleiGcGkGeflvalAkknPdknflGiEi 33
                    +l+iGcG G++ +++  ++P+ ++ +i+i
      KKY19180.1 22 ILDIGCGPGDWAIQMGRRFPSSDITAIDI 50
                    69************************998 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   7.1e-06     0.013      30      63 ..      17      50 ..       8      58 .. 0.87
   2 ?   -2.1   0.0       1.3   2.4e+03     121     137 ..      99     115 ..      95     117 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.1e-06
                CTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEES CS
         MTS 30 elsgkvlDlGcGaGvlgaalakespeaevtlvdv 63
                ++ +++lD+GcG G  ++++ ++ p+ ++t++d+
  KKY19180.1 17 SHLDRILDIGCGPGDWAIQMGRRFPSSDITAIDI 50
                46678***************************97 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.3
                 HHHHHHHHEEEEEEEEE CS
         MTS 121 liaeAkeaLkegGeLli 137
                 + ++A + L++gG L i
  KKY19180.1  99 IYRQAYRNLRPGGILEI 115
                 6789*********9976 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.5e-06    0.0098      23      70 ..      20      71 ..       5      79 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.5e-06
                -EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS....HHH.TTEEEECS-C CS
        FtsJ 23 ktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm....apl.pgvttiqgdi 70
                ++++D+g++PG w+  + +r+   + + a+D++p     +++ ++v+++  d 
  KKY19180.1 20 DRILDIGCGPGDWAIQMGRRFPS-SDITAIDIGPFditpSCIpSNVHFLMDDA 71
                579*****************975.9*********9665545567888876665 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00017      0.31      52      94 ..       6      50 ..       1      57 [. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00017
                    HHHHHSS-G..GG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE- CS
  Methyltransf_2 52 kkvleafdl..eglkslvDvGGGtGalakaivsayPtikvivfDl 94
                    ++ l + dl  ++l +++D+G G G  a ++ + +P+  ++  D+
      KKY19180.1  6 ENGLYTADLspSHLDRILDIGCGPGDWAIQMGRRFPSSDITAIDI 50
                    555666665115799**************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 1945.44
//
Query:       KKY19181.1  [L=873]
Description: putative protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-67  226.9   0.9    2.8e-67  226.9   0.9    2.4  2  Pkinase         Protein kinase domain
    7.4e-51  172.9   1.1    8.5e-51  172.7   0.0    1.6  2  Pkinase_Tyr     Protein tyrosine kinase
    2.1e-24   85.6   0.3    3.1e-23   81.9   0.0    2.8  2  PBD             P21-Rho-binding domain
    2.8e-12   47.0   0.3    9.4e-12   45.3   0.1    2.1  1  PH_11           Pleckstrin homology domain
    1.1e-05   25.9   0.5    2.6e-05   24.7   0.1    1.9  1  PH              PH domain
    1.6e-05   24.4   0.0    2.6e-05   23.7   0.0    1.3  1  Kinase-like     Kinase-like
    2.8e-05   23.1   1.1    8.9e-05   21.4   0.0    2.2  2  Pkinase_fungal  Fungal protein kinase
    6.3e-05   22.1   0.2    0.00012   21.1   0.2    1.4  1  Haspin_kinase   Haspin like kinase domain
  ------ inclusion threshold ------
      0.025   13.6   0.1      0.046   12.8   0.1    1.3  1  Seadorna_VP7    Seadornavirus VP7
      0.075   12.6   2.5       0.17   11.4   2.5    1.5  1  HXXSHH          Protein of unknown function (DUF1552)
       0.26   11.5   3.1       0.82    9.8   3.1    1.8  1  SPT16           FACT complex subunit (SPT16/CDC68)
        3.4    7.5   6.1       0.67    9.8   0.3    2.5  3  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   0.6       7.9   1.2e+04      29      56 ..     545     571 ..     536     573 .. 0.59
   2 !  226.9   0.9   1.8e-70   2.8e-67       1     264 []     583     852 ..     583     852 .. 0.88

  Alignments for each domain:
  == domain 1  score: -4.7 bits;  conditional E-value: 7.9
                 EEEEECHCHCHHHHHHHHHHHHHHHHHS CS
     Pkinase  29 vKkikkekakkkkekkvlrEikilkklk 56 
                  Kk ++e++k+ +  + ++E ++++klk
  KKY19181.1 545 AKKPAEERQKEVR-MSSMTENEVMAKLK 571
                 3444444444433.57888888888876 PP

  == domain 2  score: 226.9 bits;  conditional E-value: 1.8e-70
                 EEEEEEEEEESSEEEEEEEETTTTE...............EEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TT CS
     Pkinase   1 yekleklGeGsfGkVykaveketgk...............ivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee..kdelylvleyveg 82 
                 y+k++k+G+G++G+Vy a+ ke+                 +vA+K+++ +++  k+   +++Ei ++k +khpniv+++++f +  ++el++v+e++eg
  KKY19181.1 583 YSKQKKIGQGASGSVYVARVKENATsgvarelyrthgprgQVAIKQMDLRNQPRKEL--IVNEIIVMKDSKHPNIVNFLDSFLQeqNNELWVVMEFMEG 679
                 78999**********998876654311222222222222279999999999888765..**********************97756889********** PP

                 EBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHH CS
     Pkinase  83 geladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDv 180
                 g l+d++ ++ +++e++++ i+ ++++gl++lHs+ iiHrD+K++N+L+d+ g++KitDFG++++l++s++   ++vgt++++APEv+k++ey++kvD+
  KKY19181.1 680 GALTDVIDNNPVITEDQISTICFETCKGLAHLHSQDIIHRDIKSDNVLLDRVGNVKITDFGFCAKLTESKSkRATMVGTPYWMAPEVVKQKEYGPKVDI 778
                 **************************************************************999988877799************************* PP

                 HHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 181 WslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 WslG++ +e++  +pp+ +           + l++++ i ++ +  l++++++s+e+k +l+ +l++d k+R +a+ell+h+++
  KKY19181.1 779 WSLGIMAIEMIESEPPYLN----------EEPLKALFLIATNGTPRLKNPNKLSRELKAFLSVCLCVDVKSRASADELLHHDFM 852
                 ******************2..........2334457778888899************************************997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.4       3.1   4.7e+03      25      59 ..     537     571 ..     531     573 .. 0.73
   2 !  172.7   0.0   5.7e-54   8.5e-51       3     257 ..     585     848 ..     583     850 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.1
                  TSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS- CS
  Pkinase_Tyr  25 ekkevkVavKtlkeeateeekeelleeakimkklk 59 
                  +++e+    K+  ee ++e + + ++e ++m klk
   KKY19181.1 537 QQAETALTAKKPAEERQKEVRMSSMTENEVMAKLK 571
                  45556666677777777777889999999999885 PP

  == domain 2  score: 172.7 bits;  conditional E-value: 5.7e-54
                  EEEEEEEESSEEEEEEEEET...........TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEB CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkg...........ekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct..keepllivteyvkgGd 87 
                   +kk+G+Ga G+V+ +++k+           +++  + +Va+K+++ +++ + ke +++e+ +mk+ khpniv++l   +  ++++l++v+e+++gG 
   KKY19181.1 585 KQKKIGQGASGSVYVARVKEnatsgvarelyRTHGPRGQVAIKQMDLRNQPR-KELIVNEIIVMKDSKHPNIVNFLDSFLqeQNNELWVVMEFMEGGA 681
                  579****************99******999999999*********6666655.89999*******************999556666************ PP

                  HHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHH CS
  Pkinase_Tyr  88 LlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsk 185
                  L + + ++  + +t +++  ++++ +kG+++L+s++++Hrd+ + NvLl++   vki+DfG + ++  +++ +k+ +      WmapE++k+k++  k
   KKY19181.1 682 LTDVIDNN--PVITEDQISTICFETCKGLAHLHSQDIIHRDIKSDNVLLDRVGNVKITDFGFCAKL--TESKSKRATMVGTPYWMAPEVVKQKEYGPK 775
                  ******98..99******************************************************..555566677777889*************** PP

                  HHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH..HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 186 sDvWsfGvllwEiftlgespypglkneevlekl..kegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                   D+Ws G++ +E+++ +e py + ++ ++l  +  +   rl++p+k ++el+ +++ c+  d ++R++  el++
   KKY19181.1 776 VDIWSLGIMAIEMIE-SEPPYLNEEPLKALFLIatNGTPRLKNPNKLSRELKAFLSVCLCVDVKSRASADELLH 848
                  **************9.9*******9999888885355579***************************9999865 PP

>> PBD  P21-Rho-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   2.1e-26   3.1e-23       2      59 .]     190     247 ..     189     247 .. 0.98
   2 ?    0.1   0.1      0.69     1e+03      29      56 ..     551     578 ..     549     580 .. 0.86

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 2.1e-26
                 B---EEEEEEEEEEEETTTTEEES--CCHCCCHHHT.TTSXXXBEXXXXXXXXXXXXX CS
         PBD   2 IStPtnfkHtvHVGwdgdsgnftglPpewkkllkssgItedelkenpkavlsvdkfrs 59 
                 +S+Ptnf H+vHVG+d+++g+f+glP ew+kll++s It+++ k+np+av++v++f+s
  KKY19181.1 190 VSNPTNFSHRVHVGFDPQTGGFVGLPVEWEKLLTASAITKEDYKKNPQAVIEVLEFYS 247
                 9*******************************************************96 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.69
                 CHCCCHHHT.TTSXXXBEXXXXXXXXXX CS
         PBD  29 ewkkllkssgItedelkenpkavlsvdk 56 
                 e +k   +s+ te+e +   k+v+s+d 
  KKY19181.1 551 ERQKEVRMSSMTENEVMAKLKQVVSKDN 578
                 56778888999*************9986 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.1   6.3e-15   9.4e-12       1     104 [.      78     182 ..      78     183 .. 0.87

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 6.3e-15
       PH_11   1 vkGylkkkgsk...aWkrrwfavlkdgvLeyYksekkkv.....vkhviklSngseaklkadlisaalfkidsirssksddllleistetkifflkgds 91 
                 ++Gy+++k++k   +W +r++ +l++++L+++k+e+ k      ++ v  + ++++ ++++++++++++k++ +++ +  dl       t++++ + ++
  KKY19181.1  78 KEGYVRCKEDKflsGWNQRFL-ILREFRLDFLKNENGKLvqtinLNTVTGVTRSEDTRMAFEISRISNPKDNLSKAVNTRDLP------TRTIICEVKN 169
                 58*******************.****************97888888899999*****************99988887766654......4444556699 PP

       PH_11  92 neeteeWvealke 104
                 ++e+++W+ ++ e
  KKY19181.1 170 DDEIYDWIDKIYE 182
                 ********99865 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   1.8e-08   2.6e-05       1     102 [.      76     182 ..      76     185 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.8e-08
                 EEEEEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEE.............EESTSSSTEEEEEE CS
          PH   1 vvkeGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfel.............riverngsrtyllq 86 
                 v+keG++  k+ ++ ++w +r+++L++ +l + kn+    + ++  +i+l++++ v +    +++++  fe+             + + + ++rt++ +
  KKY19181.1  76 VIKEGYVRCKEDKFLSGWNQRFLILREFRLDFLKNE----NGKLVQTINLNTVTGVTR----SEDTRMAFEIsrisnpkdnlskaVNTRDLPTRTIICE 166
                 689***9988888888**********999*******....****************65....6777777777666666665553334433347****** PP

                 ESSHHHHHHHHHHHHH CS
          PH  87 asseeerkeWikaiqs 102
                 +++++e  +Wi  i +
  KKY19181.1 167 VKNDDEIYDWIDKIYE 182
                 ************9976 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.8e-08   2.6e-05     157     245 ..     708     790 ..     629     832 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.8e-08
  Kinase-like 157 aanLqakglvhgkftvdnllldekgglmlggft...aLvragtkvvlsevekgf.aPpEllgsrggytrknktkmthkldaWqlGlviyriwc 245
                   a+L+++ ++h ++++dn+lld+ g +++++f+   +L    ++ ++ +v   +   pE++ + +        ++  k+d W lG+ +  +  
   KKY19181.1 708 LAHLHSQDIIHRDIKSDNVLLDRVGNVKITDFGfcaKLTES-KSKRATMVGTPYwMAPEVVKQ-K--------EYGPKVDIWSLGIMAIEMIE 790
                  69****************************99733234444.444547777554267898877.3........345599******99887765 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   1.6       1.1   1.6e+03     207     251 ..     351     375 ..     324     438 .. 0.48
   2 !   21.4   0.0   5.9e-08   8.9e-05     316     396 ..     705     777 ..     695     781 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
  Pkinase_fungal 207 ahedveekdddi.aeiRkgldvtka.ekfrskrkvvsssssqelssk 251
                     + +     +d+   +iR++ + +++ e+                  +
      KKY19181.1 351 QRRR----MDEEaRKIREQQQRREReEE------------------Q 375
                     1111....11111223322222222111..................1 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 5.9e-08
  Pkinase_fungal 316 IkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhD 396
                      kg+  L+  + i+HrDi  +N+l+      +  +  + D+ +  +l +  s+s++ + +GT+++ma ev+k++e  +  D
      KKY19181.1 705 CKGLAHLH-SQDIIHRDIKSDNVLLD-----RVGNVKITDFGFCAKLTE--SKSKRATMVGTPYWMAPEVVKQKEYGPKVD 777
                     589999**.9***************9.....7788899*********95..7777789**************877666555 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.2   8.3e-08   0.00012     108     257 ..     604     746 ..     535     755 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 8.3e-08
  Haspin_kinase 108 d..seklssevyqtkekdkevvlKvipl..evledvtiskelslkelkslklvkgtypglllllqdkvlkekpdfyseqqlflvlllkdkG..td. 196
                    +    ++ +e+y+t+    +v++K + l  +        kel ++e   + +   ++p+++  l +++++++      ++l +v+++ ++G  td 
     KKY19181.1 604 EnaTSGVARELYRTHGPRGQVAIKQMDLrnQPR------KELIVNE--IIVMKDSKHPNIVNFLDSFLQEQN------NELWVVMEFMEGGalTDv 685
                    134778888999999988999999887722222......3333333..333334456788888888888777......99*******999933231 PP

  Haspin_kinase 197 LeevklkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlk.lsRle 257
                    +++  + + +q+  i +++ k L+   ++ +  HRd++ dn+L+d+ +nv + d+  +++l+
     KKY19181.1 686 IDNNPVITEDQISTICFETCKGLAHLHSQ-DIIHRDIKSDNVLLDRVGNVKITDFGfCAKLT 746
                    344478899***************99876.899**********************7355555 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   3.1e-05     0.046     151     187 ..     705     739 ..     691     750 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.1e-05
  Seadorna_VP7 151 lkdLmdfhsestnllhGDcnpenlmcDknGylklvDP 187
                    k L ++h  s+ ++h D++ +n++ D++G++k+ D 
    KKY19181.1 705 CKGLAHLH--SQDIIHRDIKSDNVLLDRVGNVKITDF 739
                   46677777..899*********************995 PP

>> HXXSHH  Protein of unknown function (DUF1552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.5   0.00011      0.17     112     225 ..     267     390 ..     233     415 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
      HXXSHH 112 gkssaysstisysgpgr.pippennPreaFsrL.........Fgsgaggs.eeaeaaarrlarrksvlDlvledakslkrkLgaadrqKLdeylesvre 199
                   ss  +++++y+g+g   +pp+  P +a +rL         Fg+ ++   + +++ ++ l+r +     +++da ++k+  ++++r+++de   ++re
  KKY19181.1 267 PASSLGNKQLGYTGSGAgIAPPRPAPPNALQRLdsnqsfkpgFGDKTPPRsG-TSTPNQGLQRSNTQPYDMEADAARIKEIANQEQRRRMDEEARKIRE 364
                 677888999999966661568899999*******999977777777666554.5555666655555555589*************************** PP

      HXXSHH 200 iekrlekaekwaptakaeagasappd 225
                   +r e++e++++++++  +as p++
  KKY19181.1 365 QQQRREREEEQNRRDQEAYNASIPQT 390
                 *****999998888777776665544 PP

>> SPT16  FACT complex subunit (SPT16/CDC68)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.1   0.00055      0.82      46     106 ..     321     381 ..     318     395 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00055
       SPT16  46 vpgsavgkkeealf.knpeaifikeltfrskdekklqevfreikelkkkvkkreaekkeked 106
                 +p++ +++++++++  + +a  ike+  ++++ ++++e +r+i+e +++ +++e++++++++
  KKY19181.1 321 TPNQGLQRSNTQPYdMEADAARIKEIANQEQR-RRMDEEARKIREQQQRREREEEQNRRDQE 381
                 56677788887777566899******988777.66***********9997666666655554 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   1.2       9.2   1.4e+04     119     140 ..     352     371 ..     331     385 .. 0.48
   2 ?    1.1   0.0      0.21   3.2e+02      13     107 ..     614     713 ..     606     715 .. 0.59
   3 ?    9.8   0.3   0.00045      0.67     158     196 ..     709     742 ..     701     744 .. 0.76

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 9.2
                 HCHTCCHHHHHHCHHHCCCGCC CS
         APH 119 laqdlellrqlesatarllase 140
                 +++  e++r++ ++  ++++++
  KKY19181.1 352 RRRMDEEARKIREQ--QQRRER 371
                 33333344444444..222222 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.21
                 EEEEEETT--EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS......HHHHHHHHHHHHHHHHHHC CS
         APH  13 tylvttpagryvlrrnppa..raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr......klsaaqlpellealgefla 103
                  y+ ++p+g+++ ++   +    +e i +e  +++  +k+ + +   l+    ++ ++ l++++e+++g  l++        +++q+  ++ +    la
  KKY19181.1 614 LYRTHGPRGQVAIKQMDLRnqPRKELIVNEIIVMKD-SKH-PNIVNFLDSFLQEQNNE-LWVVMEFMEGGALTDvidnnpVITEDQISTICFETCKGLA 709
                 566666666666666555522223333333333333.333.23444455333333333.7999999999999998878777777788888888888888 PP

                 CHHC CS
         APH 104 alhq 107
                 +lh+
  KKY19181.1 710 HLHS 713
                 8876 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00045
                 HH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 158 allpgelptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                 a+l+   ++ ++H+D++++N+l+d + g v  + Df+++
  KKY19181.1 709 AHLH---SQDIIHRDIKSDNVLLD-RVGNV-KITDFGFC 742
                 4455...6789*************.44444.48888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (873 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1478  (0.0824363); expected 358.6 (0.02)
Passed bias filter:                      596  (0.0332422); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.77u 0.34s 00:00:01.11 Elapsed: 00:00:00.52
# Mc/sec: 5096.97
//
Query:       KKY19182.1  [L=477]
Description: hypothetical protein UCRPC4_g04556 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0061   16.4   0.7      0.011   15.6   0.7    1.4  1  Nore1-SARAH  Novel Ras effector 1 C-terminal SARAH (Sav/Rassf
  ------ inclusion threshold ------
       0.46   10.6   8.9        1.1    9.4   8.9    1.7  1  Zn_clus      Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Nore1-SARAH  Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.7   1.3e-06     0.011       5      22 ..      81      98 ..      79     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.3e-06
  Nore1-SARAH  5 PELqnFLriLeeEEeeei 22
                 P Lq++Lr Le+EE++e 
   KKY19182.1 81 PALQSILRRLEKEESREF 98
                 88**************96 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   8.9   0.00012       1.1       3      34 ..     383     418 ..     381     424 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00012
                 -HHHHHCT---ST.SSSS...-HHHHHCTHHHCCCC CS
     Zn_clus   3 CdnCrkkKvKCda.kkPa...CsnCkklnleCtfys 34 
                 C +C ++ + Cd+ +++    Cs C++l  +C+  +
  KKY19182.1 383 CGRCARRGIWCDKeDQERgmrCSGCIELDMPCRRHD 418
                 99***********75555889***********9444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3239.26
//
Query:       KKY19183.1  [L=371]
Description: putative autophagocytosis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-44  150.0   0.0    6.3e-44  149.3   0.0    1.4  1  Autophagy_N      Autophagocytosis associated protein (Atg3), 
    5.7e-16   57.7   0.6    1.1e-15   56.8   0.6    1.5  1  Autophagy_C      Autophagocytosis associated protein C-termin
    3.1e-14   53.3   1.0    5.2e-14   52.6   1.0    1.4  1  Autophagy_act_C  Autophagocytosis associated protein, active-


Domain annotation for each model (and alignments):
>> Autophagy_N  Autophagocytosis associated protein (Atg3), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.3   0.0     1e-47   6.3e-44       1     136 [.       4     160 ..       4     166 .. 0.85

  Alignments for each domain:
  == domain 1  score: 149.3 bits;  conditional E-value: 1e-47
                  ...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX................ CS
  Autophagy_N   1 lkstlssvreyltpvlkeSkFretGvitpeeFvaAGDyLvhkfptWsWasa.eeskrksyLPkdKqfLvtrnVpcykRakql.eeekeeeeeiie... 93 
                  ++stl  +r++++ v+++S+Fr+tG+itpeeFv AGDyLv+kfp+WsWa+a ++skr++yLP++KqfLvtr+Vpc++R+++   +++ +ee+i++   
   KKY19183.1   4 IHSTLDVLRDKYAFVKHTSTFRQTGQITPEEFVLAGDYLVYKFPSWSWADAsPDSKRVAYLPAGKQFLVTRGVPCHRRLDDNfAGDAGHEEAIVRdgf 101
                  689999*********************************************999**************************996444455555555777 PP

                  ...........XXX---B----XX......XXXXXXXXXXXXXXXXXXX........XXXXXXX CS
  Autophagy_N  94 ...........dedegwvkthkeekeee..eeevkdideeekeeeeeee........eeedeed 136
                             d+d+gw++t++ +k++e   ++v+++de+ +  e+e +        e     d
   KKY19183.1 102 dgrgkgdsgegDDDDGWLRTGGLDKSQEarLKDVRTVDEAGNMGEREPDdeddipdmE-----D 160
                  788888888889*********9887777789999****99999999877777555322.....2 PP

>> Autophagy_C  Autophagocytosis associated protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.6   1.8e-19   1.1e-15       1      25 []     345     369 ..     345     369 .. 0.99

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 1.8e-19
  Autophagy_C   1 VdqYLviFLKFisSViPTIEyDyTm 25 
                  VdqYLv+FLKF++SV+P+IE+D+Tm
   KKY19183.1 345 VDQYLVVFLKFMASVTPGIEHDFTM 369
                  9***********************9 PP

>> Autophagy_act_C  Autophagocytosis associated protein, active-site domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   1.0   8.6e-18   5.2e-14       1      55 []     189     251 ..     189     251 .. 0.95

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 8.6e-18
  Autophagy_act_C   1 ItYsktYqvPvlyfrlydedgtplsleelyed....sad..vtieehpl..lgvpwysiHPCk 55 
                      ItY ++Y++P+ly+++y ++ +pl ++ ++ed    ++d  vt+e++p+   +v ++s+HPCk
       KKY19183.1 189 ITYTPYYRTPRLYLSGYLSHSEPLAPHLMMEDivgdYKDktVTLEDFPFydHSVKMASVHPCK 251
                      9**********************************977778********8778*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.54
# Mc/sec: 2086.71
//
Query:       KKY19184.1  [L=396]
Description: hypothetical protein UCRPC4_g04558 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.059   14.0   2.4       0.12   13.0   2.4    1.5  1  Striatin  Striatin family
      0.061   12.2   1.2      0.088   11.7   1.2    1.1  1  CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) l
      0.093   13.2   1.1       0.15   12.5   1.1    1.3  1  Fez1      Fez1


Domain annotation for each model (and alignments):
>> Striatin  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.4     2e-05      0.12      11      48 ..      21      58 ..      17      64 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2e-05
    Striatin 11 tEwhrherdRneweiEraEmkarIakLegerrgaenlk 48
                +E + +e +R+ w+ Er  + a+Ia Le   ++++  k
  KKY19184.1 21 HERETFEAERTLWDAERKMLLAKIADLELRLNKQKGPK 58
                78889***********************9988888655 PP

>> CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.2   1.5e-05     0.088      50     100 ..      12      62 ..       5      80 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.5e-05
    CALCOCO1  50 qeaanrqrekekeeykrdreeldrerkelesrveelkeelkesrekveele 100
                  e+ +r+ e+e+e ++ +r+ +d erk l  ++++l+  l++++  +++ +
  KKY19184.1  12 LETQRRNFEHERETFEAERTLWDAERKMLLAKIADLELRLNKQKGPKRRYS 62 
                 4678999******************************99998887655544 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.1   2.5e-05      0.15     136     171 ..       4      39 ..       1      49 [. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.5e-05
        Fez1 136 everlraeLkeerqkkeeqassFeqERrtWqeeKek 171
                  +e+ ra L+++r++ e+++++Fe ER  W  e+  
  KKY19184.1   4 YIEQSRALLETQRRNFEHERETFEAERTLWDAERKM 39 
                 67899999***********************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.56
# Mc/sec: 2144.76
//
Query:       KKY19185.1  [L=275]
Description: putative hlh dna binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-12   47.2   0.3    3.5e-12   46.1   0.3    1.6  1  HLH       Helix-loop-helix DNA-binding domain
  ------ inclusion threshold ------
       0.08   12.7   0.2       0.13   12.0   0.2    1.3  1  TACC_C    Transforming acidic coiled-coil-containing protein 


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.3   3.9e-16   3.5e-12       1      52 [.     154     201 ..     154     202 .. 0.92

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 3.9e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHCSTCSTTSS-STHHHHHHHHHHHHHHH CS
         HLH   1 rraahnerErrRRdriNsaleeLrellPslppskKlsKaeiLekAveYIkhL 52 
                 r+ +h+e+ErrRR+ iN++++e  +++P    +   +K +iL++Av YI++L
  KKY19185.1 154 RKDNHKEVERRRRETINDGINEIAKIVP----GCEKNKGSILQRAVSYINEL 201
                 7899************************....34459************988 PP

>> TACC_C  Transforming acidic coiled-coil-containing protein (TACC), C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   1.5e-05      0.13      35     118 ..     163     247 ..     144     253 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.5e-05
      TACC_C  35 kkenqemkkivaefektiaqlieekqkqkelakkeiqkvleekeqlladlnsveksfsdlfkryekqkevleg.ykkneeslkkc 118
                 +++ + +++ ++e  k++    ++k    + a   i+++++e++   +d  +++ ++++l  r++k+ke  e+ + +    +k+c
  KKY19185.1 163 RRRRETINDGINEIAKIVPGCEKNKGSILQRAVSYINELVMERNRWHNDRGTLDAAVKELAFRFDKMKESAEQaWVESAKWQKRC 247
                 333344555566666666666666666667788899*********************************9876244444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 1739.02
//
Query:       KKY19186.1  [L=546]
Description: hypothetical protein UCRPC4_g04560 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.047   12.9   1.5        7.3    5.7   0.1    2.5  3  DUF1152   Protein of unknown function (DUF1152)


Domain annotation for each model (and alignments):
>> DUF1152  Protein of unknown function (DUF1152)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.3   0.00047       8.5       3      29 ..     201     228 ..     200     265 .. 0.85
   2 ?    5.7   0.1   0.00041       7.3     114     132 ..     333     351 ..     316     356 .. 0.83
   3 ?   -3.9   0.0      0.34   6.1e+03     148     169 ..     384     405 ..     382     412 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.00047
     DUF1152   3 lgiGGGGDvvsalvlaellkklgvea.v 29 
                 +g+GGG D++s  ++ +l+++ gv+  +
  KKY19186.1 201 VGTGGGSDIISVSIIGHLFRRSGVDMdL 228
                 799********************98744 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.00041
     DUF1152 114 eklgidliigvDvGGDvLA 132
                 e++ id +++vD GGDv +
  KKY19186.1 333 ENVLIDTVLAVDTGGDVFG 351
                 45679***********975 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 0.34
     DUF1152 148 slAalskleeesvlavaGpGsD 169
                 +l+ l + + +s lav  pG+D
  KKY19186.1 384 TLSQLPDRGRHSALAVLCPGLD 405
                 6777888888899*******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3607.94
//
Query:       KKY19187.1  [L=181]
Description: hypothetical protein UCRPC4_g04561 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1388.11
//
Query:       KKY19188.1  [L=337]
Description: hypothetical protein UCRPC4_g04562 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-16   58.8   0.2    8.5e-16   57.8   0.2    1.6  1  SRR1       SRR1
  ------ inclusion threshold ------
      0.018   15.2   0.2      0.048   13.8   0.2    1.7  2  RRP7       Ribosomal RNA-processing protein 7 (RRP7) C-termin
      0.057   13.5   0.8       0.16   12.1   0.3    2.0  2  EcoEI_R_C  EcoEI R protein C-terminal
      0.077   13.2   0.5       0.27   11.4   0.3    2.0  2  CAF20      Cap associated factor


Domain annotation for each model (and alignments):
>> SRR1  SRR1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.2   1.9e-19   8.5e-16       1      55 []     106     170 ..     106     170 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 1.9e-19
        SRR1   1 ivclGLGsfse.......sssaryQLAlllelveelkiessrs...vyaqDPvftevDkalLesl 55 
                 +vclGL s+s+       + +a+yQLA++ +lve +++++ ++   ++aqDP+f+++D++lL+ l
  KKY19188.1 106 CVCLGLSSPSApryhldrRDVAMYQLAAFKALVELIQQHQPDTplrAFAQDPIFNALDIELLADL 170
                 8****************************************99*******************875 PP

>> RRP7  Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   1.1e-05     0.048      28      56 ..       9      38 ..       2      82 .. 0.59
   2 ?   -3.5   0.0       2.5   1.1e+04      95     111 ..     296     312 ..     294     314 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.1e-05
        RRP7 28 ekkeekkkeeevDeDGfvtVtrgk.kaaa.k 56
                + +++ k+ ++vD+DG++ Vt ++ + ++  
  KKY19188.1  9 KGASRPKRVTVVDDDGWTHVTSDQdV-QRiA 38
                33444455689***********6632.2222 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.5
        RRP7  95 eLrkkFeeDkekieelk 111
                 +L  ++ +Dk +i+  k
  KKY19188.1 296 NLVAQYLKDKGSIAMSK 312
                 78889999999988766 PP

>> EcoEI_R_C  EcoEI R protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   3.5e-05      0.16      19      63 ..      32      77 ..      26     103 .. 0.84
   2 ?   -1.6   0.0      0.55   2.5e+03     115     135 ..     296     316 ..     246     322 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
   EcoEI_R_C 19 daLqiiws.dreltkellkeLeekLkepppgitpealweayellek 63
                ++ q+i   d +l +e+ + ++++++++p +++ e+l++ y++ ++
  KKY19188.1 32 QDVQRIADlDDDLLREMTESMKDRIEKAPSDLNLEKLRTQYQRCKT 77
                56677777889999****************************9977 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.55
   EcoEI_R_C 115 elildhiaangvielddldea 135
                 +l++++++++g+i ++++++ 
  KKY19188.1 296 NLVAQYLKDKGSIAMSKFEGH 316
                 677888888888888888765 PP

>> CAF20  Cap associated factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   6.1e-05      0.27      71     100 ..       8      38 ..       2      83 .. 0.67
   2 ?   -1.4   0.0      0.51   2.3e+03      22      37 ..     130     145 ..     123     152 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.1e-05
       CAF20  71 kkPklkkkkavkvDedGwstlekkkka.sfg 100
                  k   ++k+ ++vD+dGw+ +++ ++   ++
  KKY19188.1   8 RKGASRPKRVTVVDDDGWTHVTSDQDVqRIA 38 
                 3455589999********9999888863233 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.51
       CAF20  22 ileaFnaliekvkelq 37 
                  l+aF+al+e +++ q
  KKY19188.1 130 QLAAFKALVELIQQHQ 145
                 5789*****9999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       852  (0.0475208); expected 358.6 (0.02)
Passed bias filter:                      657  (0.0366445); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2050.20
//
Query:       KKY19189.1  [L=389]
Description: putative d-arabinitol dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-54  184.1   0.7    2.3e-49  168.1   0.0    2.1  2  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    1.6e-40  138.7   0.7    8.3e-31  107.0   0.0    2.1  2  adh_short     short chain dehydrogenase
    3.2e-11   43.5   0.6    1.3e-10   41.5   0.6    1.8  1  KR            KR domain
  ------ inclusion threshold ------
      0.011   15.3   0.1      0.025   14.0   0.1    1.6  1  Epimerase     NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.4   5.1e-06     0.023       1      42 [.     122     164 ..     122     169 .. 0.89
   2 !  168.1   0.0   5.2e-53   2.3e-49      45     234 .]     194     387 ..     179     387 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.1e-06
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTT CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelg 42 
                   G a+g+G  + +al + Ga+++++dln+e+ +++++el++ ++
    KKY19189.1 122 GGARGLGLVMGQALIQSGADLAIVDLNKEEaEHQAAELTAHHK 164
                   669***************************8899999887655 PP

  == domain 2  score: 168.1 bits;  conditional E-value: 5.2e-53
                   EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHH.HCTSC..CEEEEEEEGGGTSB.STT CS
  adh_short_C2  45 vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslfllakaalp.lmkeg..gsivnlssvgaerv.vpn 137
                   + +cDV+d+++v+a+ +++ +++gk+D lv +ag++++   ++++ + + +++   vn+ +++l+a  +++ l++++  gsiv + s+++ +v vp+
    KKY19189.1 194 AHRCDVSDPDSVNATLQDIISQHGKIDNLVTSAGFTEN--YDAISYPYDRIKKLWGVNVDGTYLFATGVAKhLLERQspGSIVMIGSMSGAIVnVPQ 288
                   589***********************************..******************************98777779*******999666665999 PP

                   TT.HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT.HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 138 yn.aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg.fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                    +  y+aaKaa+ +l+ +lAve+++ +iRvN++spg++ T ++++i + ++ l +++ + +p g++g+pe+   a+ fL+sd+++yitG++l vDgG
    KKY19189.1 289 PQaPYNAAKAAVRHLAASLAVEWAHANIRVNCISPGYMLTALTRKILDdNPVLNQKWTSLIPQGKMGRPEDLMGAVTFLLSDASAYITGADLRVDGG 385
                   9989*****************************************98835558899***************************************** PP

                   GG CS
  adh_short_C2 233 lt 234
                   +t
    KKY19189.1 386 YT 387
                   *8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.5   7.4e-11   3.3e-07       2      51 ..     117     166 ..     116     169 .. 0.93
   2 !  107.0   0.0   1.9e-34   8.3e-31      49     193 ..     190     337 ..     182     339 .. 0.93

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 7.4e-11
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEE CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegaka 51 
                 v++vtG+++G+G+ + ++l+++Ga++++vd ++e++e+ a+el ++ ++a
  KKY19189.1 117 VAVVTGGARGLGLVMGQALIQSGADLAIVDLNKEEAEHQAAELTAHHKQA 166
                 89*****************************************9986655 PP

  == domain 2  score: 107.0 bits;  conditional E-value: 1.9e-34
                 SEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGG..TSB-T CS
   adh_short  49 akalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseeewervievNltgvflltravlpaml.kqssGrIvnvsSvag..kvpva 144
                  k++a ++Dv+d ++v+a+++++++++gk+d Lv+ AG t++ ++ ++  ++++++  vN+ g++l +  v++++l +qs G+Iv ++S+ g   +   
  KKY19189.1 190 PKITAHRCDVSDPDSVNATLQDIISQHGKIDNLVTSAGFTENYDAISYPYDRIKKLWGVNVDGTYLFATGVAKHLLeRQSPGSIVMIGSMSGaiVNVPQ 288
                 5788999*******************************************************************9989999***********7433344 PP

                 TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTH CS
   adh_short 145 gvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelrek 193
                  +a+Y A+Kaav++l+ sla e+a  +irvn++ PG++ T++++++ ++
  KKY19189.1 289 PQAPYNAAKAAVRHLAASLAVEWAHANIRVNCISPGYMLTALTRKILDD 337
                 5899***************************************998765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.6   2.9e-14   1.3e-10       4     163 ..     119     307 ..     117     318 .. 0.78

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 2.9e-14
                 EEETTTSHHHHHHHHHHHHHHS-.EEEEE-SS..--HHHHHHHHHHHHTT-......................EEEE----TT-HHHHHHHHHHHHHHS CS
          KR   4 litGGlGgLGlelarwlaekgar.hlvllsRsaaadedskaliaelealga......................evevvaaDvsdkdavealleeikaee 79 
                 ++tGG+ gLGl++ + l+++ga   +v l ++ +a++++++l+a+ ++ +                       ++++ ++Dvsd+d+v+a+l++i +++
  KKY19189.1 119 VVTGGARGLGLVMGQALIQSGADlAIVDLNKE-EAEHQAAELTAHHKQANPgsefydrgkfaggvkpnvfrtpKITAHRCDVSDPDSVNATLQDIISQH 216
                 89*******************76255556666.4444444433333332113355555556666777778888************************** PP

                 S---EEEE---------TTT--HHHHHHHHTTTTHHHHHHHHHTTT.....S--SEEEEEEEHHHHH--..TT-HHHHHHHHHHHHHHHHH CS
          KR  80 ppikGvihaAgvlrdklleemtaedleqvlapKvkGawnLhelled.....esldffvlfSSiagllgs..agqanYaaaNaflDalaeyr 163
                 ++i   + +Ag++++    +   ++++++    v+G+    + +++     +s   +v++ S++g + +  + qa Y aa a +  la++ 
  KKY19189.1 217 GKIDNLVTSAGFTENYDAISYPYDRIKKLWGVNVDGTYLFATGVAKhllerQSPGSIVMIGSMSGAIVNvpQPQAPYNAAKAAVRHLAASL 307
                 *************************************9987655554444488999*********8877225689******9999888765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   5.6e-06     0.025       2     159 ..     119     310 ..     118     341 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.6e-06
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC................................EEEE--TT-HH....HHHHHHHHH. CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl................................elveldltdrs....alerlfkee. 63 
                 +VtG++  +G  + +al + g ++  +d ++++ ++++ e +                                + +++d+ d++     l+++++++ 
  KKY19189.1 119 VVTGGARGLGLVMGQALIQSGADLAIVDLNKEEAEHQAAELTahhkqanpgsefydrgkfaggvkpnvfrtpkiTAHRCDVSDPDsvnaTLQDIISQHg 217
                 79*********************99999887777666655558999**************************************977777889999999 PP

                 T-SEEEE--S---HHHHHHSHHHHHH....HHTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHH CS
   Epimerase  64 qpdavihlAavggvaassedpadfie....knlqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaa 158
                 ++d  +  A+     + +++p d i+     n+ gt+  +  + k+ +      +S  + G +       ++     +p+ pY aaK+a+ +l+ ++a 
  KKY19189.1 218 KIDNLVTSAGFTENYDAISYPYDRIKklwgVNVDGTYLFATGVAKHLL-ERQSPGSIVMIGSMSG--AIVNV----PQPQAPYNAAKAAVRHLAASLAV 309
                 **********65555668887765552222799999999999999988.6678899999998888..23333....48************999988765 PP

                 H CS
   Epimerase 159 q 159
                 +
  KKY19189.1 310 E 310
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2559.77
//
Query:       KKY19190.1  [L=282]
Description: putative sam domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-18   66.0   0.0    5.2e-18   65.4   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    1.4e-09   38.5   0.0    6.1e-09   36.5   0.0    2.1  2  Methyltransf_25  Methyltransferase domain
    1.1e-07   32.4   0.0    3.2e-07   30.9   0.0    1.9  1  Methyltransf_11  Methyltransferase domain
    8.9e-07   29.6   0.0    4.7e-06   27.3   0.0    2.1  1  Methyltransf_12  Methyltransferase domain
    6.1e-05   22.9   0.0       0.16   11.7   0.0    2.2  2  Methyltransf_31  Methyltransferase domain
     0.0037   16.8   0.0     0.0089   15.5   0.0    1.6  2  Methyltransf_4   Putative methyltransferase
     0.0047   16.7   0.0     0.0082   15.9   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
      0.005   17.0   0.0      0.023   14.8   0.0    1.9  2  FtsJ             FtsJ-like methyltransferase
      0.007   15.7   0.0       0.35   10.1   0.0    2.6  3  Methyltransf_2   O-methyltransferase domain
  ------ inclusion threshold ------
      0.033   13.8   0.0       0.15   11.6   0.0    1.9  2  MTS              Methyltransferase small domain
      0.089   12.1   0.0       0.36   10.1   0.0    1.9  1  CMAS             Mycolic acid cyclopropane synthetase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0   3.2e-21   5.2e-18      25     160 ..      59     206 ..      11     210 .. 0.78

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 3.2e-21
  Methyltransf_23  25 rvLdiGcGtGillevlren..gfsvtgvDlspeaveiae.kakkaqkdqfdeqeaaepqg....kfdlIvlrevlehvpdppellrqiatllkp 111
                        LdiG+GtG ++ +++++   +sv+g Dlsp++  +++ + ++ ++d++     a +++      d+I++r+ ++ ++++p+l++++++ lkp
       KKY19190.1  59 HALDIGTGTGLWAIEFADQhpSCSVIGTDLSPIQPTWVPpNCSFLVDDCE-----ATDNDwifpPMDFIHSRFIIGGIKNWPALFKRAYNALKP 147
                      78**************9985567**************9777777777777.....444447999****************************** PP

  Methyltransf_23 112 gGylllseplasl...........kedrllldwlylvpagrhisffsarslkelleeaGl 160
                      gG+++++ep+ +            +  ++ ++ + +  + + +    ++ + ++l +aG+
       KKY19190.1 148 GGWIEVHEPNLPIrcddgtadsshPMIQWSQHCRDACAK-TGVDTTASERFVQQLSDAGF 206
                      ********9877788888876443344444444433322.77788877888888888887 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   3.8e-12   6.1e-09       2      97 .]      61     149 ..      60     149 .. 0.84
   2 ?   -2.9   0.0       7.2   1.2e+04      21      29 ..     183     191 ..     167     205 .. 0.48

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 3.8e-12
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS....SSTTTEEEEEEESTGGGSSHHHHHHHHHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlp....fedgsfDlvvssgalhhlsdedlekalkeiar 91 
                      Ld+G+GtG +++++a++ ++++v+g+D+s+ +   +        +n++f++ d+e+ +    f+   +D+++s++ +     +++++++k++++
       KKY19190.1  61 LDIGTGTGLWAIEFADQHPSCSVIGTDLSPIQPTWVP-------PNCSFLVDDCEATDndwiFP--PMDFIHSRFIIGG--IKNWPALFKRAYN 143
                      9****************989**********9988664.......46699999998866333355..6******866555..569********** PP

                      HEEEEE CS
  Methyltransf_25  92 vLkpgG 97 
                      +LkpgG
       KKY19190.1 144 ALKPGG 149
                      *****9 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.2
                      SSEEEEEES CS
  Methyltransf_25  21 kakvtgvDi 29 
                      ++  tgvD 
       KKY19190.1 183 ACAKTGVDT 191
                      233334443 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0     2e-10   3.2e-07       1      94 [.      61     151 ..      61     153 .. 0.86

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2e-10
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTS....S-TT-EEEEEEES-CCC-CCHHHHHHHHHHHE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaeklp....fednsfDlvvssevlhhvedpekalkeiaRvL 88 
                      Ld+G+GtG+ a ++a++   ++v+g+Dls+ + +++         +++f+v d+e +     f+   +D++ s++ +  ++++ +++k ++  L
       KKY19190.1  61 LDIGTGTGLWAIEFADQHpsCSVIGTDLSPIQPTWVPP-------NCSFLVDDCEATDndwiFPP--MDFIHSRFIIGGIKNWPALFKRAYNAL 145
                      8**************98899*************88832.......36777777776432333666..*************************** PP

                      EEEEEE CS
  Methyltransf_11  89 kpgGll 94 
                      kpgG++
       KKY19190.1 146 KPGGWI 151
                      ****97 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   2.9e-09   4.7e-06       1      99 []      61     151 ..      61     151 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 2.9e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L+iG+GtG  + ++++++p ++++g+D+sp +     +    ++   ++ +e +++d +        D +++ + +  +k++ +++++++++Lk
       KKY19190.1  61 LDIGTGTGLWAIEFADQHPSCSVIGTDLSPIQP----TWVPPNCSFLVDDCEATDNDWIFP----PMDFIHSRFIIGGIKNWPALFKRAYNALK 146
                      8*******************************9....666666666666777777776654....9**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       KKY19190.1 147 PGGWI 151
                      ***86 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   9.9e-05      0.16       4      38 ..      57      90 ..      54      92 .. 0.87
   2 !    9.1   0.0   0.00063         1      55     114 ..      99     166 ..      96     218 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.9e-05
  Methyltransf_31  4 glrvlDlGCGtGeltfelaeelgpkaevvGiDise 38
                      ++ lD+G+GtG  ++e+a    p + v+G D s+
       KKY19190.1 57 ITHALDIGTGTGLWAIEFA-DQHPSCSVIGTDLSP 90
                     5688***************.66899*******987 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00063
  Methyltransf_31  55 nveFeqgdieelekl.ledekfDlilsnevlnaladpdkileeiervlkpggilliedpr........l 114
                      n++F + d e+ +++ +   + D+i+s+ ++  +++ ++ ++++ ++lkpgg + + +p+        +
       KKY19190.1  99 NCSFLVDDCEATDNDwIF-PPMDFIHSRFIIGGIKNWPALFKRAYNALKPGGWIEVHEPNlpircddgT 166
                      89*********9988654.79************************************999444444431 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.4e-06    0.0089       5      33 ..      60      88 ..      56      92 .. 0.91
   2 ?   -3.2   0.0         3   4.9e+03      98     115 ..     136     153 ..     135     154 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.4e-06
                    EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4  5 vleiGcGkGeflvalAkknPdknflGiEi 33
                     l+iG+G G + ++ A ++P+++++G ++
      KKY19190.1 60 ALDIGTGTGLWAIEFADQHPSCSVIGTDL 88
                    68************************876 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3
                     HHHHHHHHHEEEEEEEEE CS
  Methyltransf_4  98 ellkelarvLkkgGvlel 115
                     +l k + ++Lk+gG +e+
      KKY19190.1 136 ALFKRAYNALKPGGWIEV 153
                     567788899*****9975 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     5e-06    0.0082      44      83 ..      54      93 ..      36     101 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5e-06
  Methyltransf_16 44 elsklsvlELGsGtGlvGlavaellpeakviltDleelle 83
                     e + +++l++G GtGl  + +a + p+++vi tDl+ +++
       KKY19190.1 54 EDKITHALDIGTGTGLWAIEFADQHPSCSVIGTDLSPIQP 93
                     5677899***************************998765 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.4e-05     0.023       6      70 ..      28     107 ..      24     116 .. 0.73
   2 ?   -0.7   0.0      0.79   1.3e+03      32      43 ..     147     158 ..     144     210 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHT-S-TT-E.............EEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-C CS
        FtsJ   6 ayKLleidekfklfkpgkt.............vvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgdi 70 
                 a  L +++++ +l+ ++++             ++D+g ++G w+   + + ++++ v++ Dl p++p    p+++++  d 
  KKY19190.1  28 ADRLVDLQHQISLLANDGKlfsapieedkithALDIGTGTGLWAIEFADQ-HPSCSVIGTDLSPIQPTwvpPNCSFLVDDC 107
                 55667777777777655333444444455555***********9888777.457***********9999989999985554 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.79
                 TSHHHHHHCCT. CS
        FtsJ  32 PGgwsqvllqrl 43 
                 PGgw++v   +l
  KKY19190.1 147 PGGWIEVHEPNL 158
                 899998875555 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00021      0.35      32      95 ..      24      89 ..       5     102 .. 0.76
   2 ?    2.5   0.0     0.046        75     147     179 ..     136     168 ..     131     207 .. 0.73
   3 ?   -1.7   0.0      0.91   1.5e+03     137     157 ..     253     272 ..     242     274 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00021
                    SHHHHHHHHHHHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2 32 deeerakfnkglqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95
                    de+e ++  +++++ s l  +  l +      ++++ +D+G GtG  a + + ++P+++vi  Dl+
      KKY19190.1 24 DEREADRLVDLQHQISLLANDGKLFSAPieEDKITHALDIGTGTGLWAIEFADQHPSCSVIGTDLS 89
                    5555555555555555555555554444124579999************************99996 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.046
                     HHHHHHHHH--TT-EEEEEE----TTS---HHH CS
  Methyltransf_2 147 klLkrvkkalpagGkvivveavlgadpsgelet 179
                      l kr ++al++gG + v e  l+ + ++ ++ 
      KKY19190.1 136 ALFKRAYNALKPGGWIEVHEPNLPIRCDDGTAD 168
                     5899************99999998877766554 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.91
                     GGGS-HHHHHHHHHHHHHH-- CS
  Methyltransf_2 137 lhDwsdekcvklLkrvkkalp 157
                     l  ws+e+   +L++++ a +
      KKY19190.1 253 L-GWSEEEFEVFLAKCRTANK 272
                     4.69************99865 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.1e-05      0.15      27      63 ..      52      88 ..      43      91 .. 0.84
   2 ?   -1.1   0.0      0.74   1.2e+03     120     135 ..     136     151 ..     131     160 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.1e-05
                CHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEES CS
         MTS 27 lpkelsgkvlDlGcGaGvlgaalakespeaevtlvdv 63
                +++++  ++lD+G+G+G+ ++++a+++p+ +v  +d 
  KKY19190.1 52 IEEDKITHALDIGTGTGLWAIEFADQHPSCSVIGTDL 88
                566666789********************99988886 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.74
                 HHHHHHHHHEEEEEEE CS
         MTS 120 eliaeAkeaLkegGeL 135
                 +l++ A +aLk+gG +
  KKY19190.1 136 ALFKRAYNALKPGGWI 151
                 799**********965 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00022      0.36      65     165 ..      59     154 ..      52     179 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00022
                 EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG-----SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT-EE CS
        CMAS  65 tlLdiGcGWGslvrravery.dvkvvglTlSkeqaklakkrvdeldlerkvevklldyedldekvdrvvsvgafehvgkenydtffkklkkllkedGll 162
                 + LdiG+G G  +++ ++++   +v+g  lS  q  ++  ++  l   ++ e +  d+  +  ++d + s  ++   g +n+++ fk+++++lk++G +
  KKY19190.1  59 HALDIGTGTGLWAIEFADQHpSCSVIGTDLSPIQPTWVPPNCSFLV--DDCEATDNDW--IFPPMDFIHSRFIIG--GIKNWPALFKRAYNALKPGGWI 151
                 5799999999988888777636899999999999999999887654..6677777777..667899999866654..889*****************99 PP

                 EEE CS
        CMAS 163 llh 165
                  +h
  KKY19190.1 152 EVH 154
                 988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 1691.31
//
Query:       KKY19191.1  [L=772]
Description: putative glycerol-3-phosphate o-acyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-09   37.6   0.0    0.00022   20.8   0.0    2.4  2  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.2e-06     0.022       9      78 ..      39     109 ..      31     168 .. 0.84
   2 !   20.8   0.0   1.2e-08   0.00022      81     134 ..     222     280 ..     203     281 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.2e-06
  Acyltransferase   9 nlpekgpailvaN.Hqsy.lDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidRksnara 78 
                      ++p+k+p+ilva  H    +D l+l+ +l+++  +r  ++ia k+ ++ +++g+++ ++g+ ++ R  ++++
       KKY19191.1  39 RIPRKDPIILVAApHANQfVDSLILMRILKTHAKRRISWLIAEKSTKR-QFIGTAALAAGALPVARALDSQK 109
                      6899999998865499989**********9999558889999999666.*****************444333 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 1.2e-08
  Acyltransferase  81 sleniselleegklvviFPEGtrsregellpfkkGlvrlaakak.....kgvpivPvai 134
                      +++ + +lleeg  v+iFPEG+      llp k+G++ +a+ a       gv i+P+++
       KKY19191.1 222 VYDAVFDLLEEGGCVGIFPEGGSHDRPDLLPLKAGVAIMALGALaanpnCGVKIIPCGM 280
                      55666679********************************9999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 5075.10
//
Query:       KKY19192.1  [L=309]
Description: hypothetical protein UCRPC4_g04566 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0068   16.6   0.2       0.75   10.0   0.1    2.7  3  Myb_DNA-binding  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.72   1.3e+04      29      40 ..     137     149 ..     136     153 .. 0.81
   2 !   10.0   0.1   4.2e-05      0.75      25      45 ..     249     269 ..     248     270 .. 0.88
   3 !    3.7   0.0    0.0041        73      19      34 ..     287     303 ..     273     306 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.72
                      HHT.SS-HHHHHH CS
  Myb_DNA-binding  29 rlg.gRtekqcrs 40 
                      ++g g ++ q+r+
       KKY19192.1 137 MVGrGASGLQVRN 149
                      5777889999997 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 4.2e-05
                      HHHHHHTSS-HHHHHHHHHHH CS
  Myb_DNA-binding  25 kIaerlggRtekqcrsrwrny 45 
                      ++  ++++R  k+cr rw+++
       KKY19192.1 249 SVTGHIQTRYLKSCRFRWLDW 269
                      5777999***********998 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.0041
                      HTTCHHHHHHHHT.SS- CS
  Myb_DNA-binding  19 hGnrWkkIaerlg.gRt 34 
                      +G+ Wk + ++++ +R 
       KKY19192.1 287 MGGEWKNVTDEIPtTRE 303
                      89***********7775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2240.25
//
Query:       KKY19193.1  [L=408]
Description: hypothetical protein UCRPC4_g04567 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 2437.90
//
Query:       KKY19194.1  [L=144]
Description: putative udp-n-acetylmuramate--l-alanine ligase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0035   17.3   0.0     0.0041   17.1   0.0    1.1  1  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.3e-07    0.0041      22     105 ..      17     110 ..       3     134 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.3e-07
                 -EEEEE.......E-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTE..EEEEEE----EE-SS.HHHHHHHHHHHHHHHHHHCCH CS
         APH  22 ryvlrr.......npparaaeeirrevallrlLakagvpvPevlagdtddeeigl..lfalieyvpgrsllr.klsaaqlpellealgeflaal 105
                 r++ r+       +pp+  +  i++e a l+ L+++ vp+P+++++   +++++    + lie +pg+sl     s +q+ ++le l+++  +l
  KKY19194.1  17 RWLARIrrftassPPPKLRDYLIQSEIATLKCLEATAVPTPKLFDYTFEGDGNPVgvGYMLIEKLPGTSLQWhVASSKQKFKVLEGLADAFIEL 110
                 6666664444443444455556679********************998888888888************9877555555555555555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.48
# Mc/sec: 895.60
//
Query:       KKY19195.1  [L=506]
Description: hypothetical protein UCRPC4_g04569 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1724  (0.0961571); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.96u 0.37s 00:00:01.33 Elapsed: 00:00:00.54
# Mc/sec: 2828.04
//
Query:       KKY19196.1  [L=245]
Description: putative ribosomal protein l24e [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1592.73
//
Query:       KKY19197.1  [L=537]
Description: putative glucan endo-beta-glucosidase btgc [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-07   29.7   4.9    9.6e-06   25.4   1.9    2.5  2  Glyco_hydro_17  Glycosyl hydrolases family 17
  ------ inclusion threshold ------
        6.1    6.8   7.9       0.84    9.6   3.1    1.9  2  DUF2076         Uncharacterized protein conserved in bacteria


Domain annotation for each model (and alignments):
>> Glyco_hydro_17  Glycosyl hydrolases family 17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.1    0.0018        16     140     202 ..     365     427 ..     335     436 .. 0.76
   2 !   25.4   1.9   1.1e-09   9.6e-06     232     308 ..     434     523 ..     427     528 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0018
  Glyco_hydro_17 140 ssyppsqstfreevkpvvdpivvflagtnspllvnvyPYfvysndpsnvsLdyalfqkqslvn 202
                     +++  +     + +  + d ++  + +    ++ n++P+f+   + +     ++++q++ +v 
      KKY19197.1 365 TNFTSKGYNLTVTTSDLGDNWNAEIVNVVDVVMSNIHPFFAGVTASAAAGWTWSFWQNNDVVL 427
                     444444445556666778899999999999**********99999899999******998876 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 1.1e-09
  Glyco_hydro_17 232 elvvsEtGWPsdGs........tgaslenaatyveNlikkvkeGtpskpgkgietyvfalFdEnqK...pees...vekhfGvfkpdkslk 308
                     + ++sEtGWPs G          + ++  +++ v+ +  +++  +++    g e + f++FdE +K   +       e ++G++ p ++ k
      KKY19197.1 434 KQIISETGWPSGGGndcgtttdCTTKTSGSVAGVTEMNTFMEDWVCQALKNGTEYFWFEAFDEPWKviyNT-KgkeWEDKWGLMDPARKIK 523
                     568*********988755443323344567788899999999***********************955422.145699******9988766 PP

>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2      0.82   7.4e+03     129     138 ..      50      59 ..      12      92 .. 0.47
   2 ?    9.6   3.1   9.4e-05      0.84     163     257 ..     138     254 ..     132     269 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.82
     DUF2076 129 pgyaqqqaqp 138
                 pg + +q++p
  KKY19197.1  50 PGTMTPQQYP 59 
                 1222112222 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 9.4e-05
     DUF2076 163 AAGVaGGvllangleslfsgksgeegaasasqsaeeeeiinnyyssssladdaedadnasadsfad..........................sdsssdn 235
                 AA Va+G ++ ++l+s++++++ +++a++     +   + n ++++ss+a ++e++d  s+++ ++                            +s+++
  KKY19197.1 138 AADVAAGPIVSRSLSSMMKKNNMGSQATNY----KPGGLSNSSMNDSSQALEGEKSDWLSRQTRGNnkmkwtlflviggivliaiiggiiggVAASKSH 232
                 999*****************8755544443....33333333333333444444444433333333445567899999999999999999984444444 PP

     DUF2076 236 nadaasdddsdddssddgggDD 257
                 +++a+ +d+s+ +ssd + g D
  KKY19197.1 233 KSSASPNDASHSNSSDTDFGKD 254
                 4555555555555554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      666  (0.0371465); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.49
# Mc/sec: 3310.70
//
Query:       KKY19198.1  [L=273]
Description: putative nudix family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-08   34.2   0.0    3.5e-08   33.5   0.0    1.3  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0     2e-12   3.5e-08      11     126 ..     114     256 ..     104     261 .. 0.75

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 2e-12
                 EETTSE..EEEEEESSSSTTT...E.ESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEE.............EEEEEEEEE. CS
       NUDIX  11 lnekge..vLlvrrskkpfpg...W.elPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygd.............eheilyvfl. 89 
                 +++k+e  v+l+ +  + ++g   + e+P+G++++  t++  A+ E++EE+Gle ++ ell+ ++  + +++p  +              +e++ +fl 
  KKY19198.1 114 CDNKDEkyVILTVQP-RIPAGslsFaEIPAGMLDDSGTFAGGAAKEIKEEVGLEIPEKELLNMTQLALEDNAPSAEeqlqkalypspggSDEFIPLFLw 211
                 455545688888888.77777665346*******999***************99999999999999999888888888888999999998888877777 PP

                 .........EEECSGCSST.STTTEEEEEEEEHHHHHHHHTHCTHHH CS
       NUDIX  90 .........eevegelepn.denevsevrwvpleellkeklaaesrk 126
                          e ++g+l+   d++e   ++ v+le+l   +  a++ k
  KKY19198.1 212 eksmpreqiEGFKGRLTGLrDRGEKITLKVVKLEDL--WRVGARDGK 256
                 675555444455555554488888888899999998..555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       218  (0.0121591); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1988.94
//
Query:       KKY19199.1  [L=1023]
Description: putative exocyst complex component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-44  151.6   0.2    3.3e-44  150.2   0.2    1.8  1  Sec8_exocyst  Sec8 exocyst complex component specific domain
    4.2e-07   29.6   0.1    7.8e-07   28.7   0.1    1.4  1  Vps54_N       Vacuolar-sorting protein 54, of GARP complex
  ------ inclusion threshold ------
      0.024   13.2   0.1      0.041   12.5   0.1    1.2  1  Zw10          Centromere/kinetochore Zw10
      0.074   13.3   1.2       0.33   11.3   0.3    2.5  2  KxDL          Uncharacterized conserved protein
       0.32   11.1   3.2        2.5    8.2   0.8    2.9  2  Vps51         Vps51/Vps67


Domain annotation for each model (and alignments):
>> Sec8_exocyst  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.2   0.2   9.1e-48   3.3e-44       2     141 ..       4     143 ..       3     144 .. 0.99

  Alignments for each domain:
  == domain 1  score: 150.2 bits;  conditional E-value: 9.1e-48
  Sec8_exocyst   2 LkevlnkikeeWpavlsddanpvelalsllDdssvGlahrlkefkqlkkqieeaLqevvnehhqaFnssiasYskilssiqesqekvselKesleea 98 
                   ++evl+ i+++W ++ +dd+ pv++al+l+D+ss+Gla++ ++f+q++ +++ aL+++vnehhq+Fnssi++Y+ki++s+q+sq++v+ lK++l+ea
    KKY19199.1   4 MDEVLRYIQSDWSFMGKDDCIPVQVALQLMDNSSLGLANKEPDFQQTQLDLQGALKNIVNEHHQDFNSSIGTYHKIQNSLQSSQSRVRYLKNALAEA 100
                   789********************************************************************************************** PP

  Sec8_exocyst  99 kkklstkkkeLkelnarsakykevieiLdaieelkkvpdkieq 141
                   k  l t+k+eLk l+++s+++++ +++  +ie +++vp+k+e+
    KKY19199.1 101 KGGLLTTKPELKGLATSSQAFDDTLQLFGQIESIQAVPEKLEA 143
                   *****************************************96 PP

>> Vps54_N  Vacuolar-sorting protein 54, of GARP complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   2.2e-10   7.8e-07      40     158 ..      47     165 ..      24     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 2.2e-10
     Vps54_N  40 lksqhdvvskklsqlilekreefvkelseveeiekelkesvvickngrraLdlakkeltrtsLellakskkrqllkkllktltaikelrelekrleell 138
                 +++ +  ++  l++ + e+++ f++ ++  ++i++ l++s   ++  ++aL+ ak  l +t+ el    +  q+  + l+   +i +++ + ++le  +
  KKY19199.1  47 FQQTQLDLQGALKNIVNEHHQDFNSSIGTYHKIQNSLQSSQSRVRYLKNALAEAKGGLLTTKPELKGLATSSQAFDDTLQLFGQIESIQAVPEKLEARI 145
                 44555567778999************************************************************************************* PP

     Vps54_N 139 eeedysaAiqllletkqlae 158
                 +e+ +  A+++l +  +++ 
  KKY19199.1 146 SEKRFLTAVDVLQDALRTVR 165
                 ************99888765 PP

>> Zw10  Centromere/kinetochore Zw10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.1e-05     0.041      20     175 ..      48     199 ..      39     214 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.1e-05
        Zw10  20 ekkveeikeevskmivkkYseflelsssaeellerveslskeidalkkkveneieqdlkaaveelaelkqqlkekevvlellealkkieealeelkeal 118
                 ++   ++++ + + +++++++f  +  + +++ + ++s ++ +  lk+ + +  +  l     el  l +  +  +  l+l  +++ i+   e+l+  +
  KKY19199.1  48 QQTQLDLQGALKNIVNEHHQDFNSSIGTYHKIQNSLQSSQSRVRYLKNALAE-AKGGLLTTKPELKGLATSSQAFDDTLQLFGQIESIQAVPEKLEARI 145
                 66677899999************************************99975.567777788889999999999999********************** PP

        Zw10 119 knkaflvaadlleelkslldlekvekafqlkilkalrkelsvlsenlqykLgeewdr 175
                  +k+fl+a d+l+++   +   +  +++ +     lr+ +s+++  l + L ee   
  KKY19199.1 146 SEKRFLTAVDVLQDALRTVRRSDLDGIGGIS---DLRSYFSNQELSLTDILVEELHD 199
                 **************99988766666665544...66666666666666666666555 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   9.2e-05      0.33      34      80 ..      53      99 ..      25     101 .. 0.85
   2 ?   -1.5   0.0       0.9   3.2e+03      14      31 ..     672     689 ..     666     695 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.2e-05
        KxDL 34 elnalsqerlaklrarfkqgtkllkevkkdLesifkkirslkaklak 80
                +l+  +++ +++++++f++ + + +++++ L+s+++++r lk  la+
  KKY19199.1 53 DLQGALKNIVNEHHQDFNSSIGTYHKIQNSLQSSQSRVRYLKNALAE 99
                4556667777899*****************************99886 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.9
        KxDL  14 ilalQaqtsgrlnkknre 31 
                 +  + +q+s+ +n++n++
  KKY19199.1 672 AALVDKQISALINATNEK 689
                 5556789********986 PP

>> Vps51  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.8    0.0007       2.5      21      82 ..      37      98 ..      26     101 .. 0.87
   2 ?    1.4   0.1     0.095   3.4e+02      21      46 ..     438     463 ..     430     464 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0007
       Vps51 21 lkellkveasllseiraldselkalVydnYskLisasdtIrkmksemdkldqklselkqais 82
                  +l ++e + ++   +l+  lk++V ++++++ s   t +k+++++++ ++++  lk+a+ 
  KKY19199.1 37 SLGLANKEPDFQQTQLDLQGALKNIVNEHHQDFNSSIGTYHKIQNSLQSSQSRVRYLKNALA 98
                45788889999999*********************************999999999999876 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.095
       Vps51  21 lkellkveasllseiraldselkalV 46 
                 l e++k+ as++ e  +ld+ lk+ V
  KKY19199.1 438 LGEMDKKSASMKEEQDDLDEILKSSV 463
                 67899*****************9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1023 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 6795.17
//
Query:       KKY19200.1  [L=814]
Description: putative importin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.061   13.7   0.2          6    7.3   0.2    3.1  2  HEAT_2    HEAT repeats


Domain annotation for each model (and alignments):
>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.2   0.00033         6       3      72 ..     390     470 ..     388     471 .. 0.75
   2 ?    2.6   0.0      0.01   1.8e+02       2      25 ..     543     566 ..     540     601 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00033
      HEAT_2   3 aLlqalendpdpevrraairaLg...rignpealpaLvell...ededpavRraaaeaLgai.....gdpealpaLkelld 72 
                 +L + l++     ++ +ai++L    r + ++alp L++ l   +  +pa +r +  +L+ai      +++ ++ Lk+ll+
  KKY19200.1 390 YLFSGLSDGDQSSLASEAIQTLCdsrRSDLTSALPQLLSSLsvlDQMHPAHQRRIFFSLAAIiqallSEEAKVQPLKDLLQ 470
                 6777885555567999*******6544455699999999885423358***********9986544447889999999985 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.01
      HEAT_2   2 daLlqalendpdpevrraairaLg 25 
                 +aL q+l++ p+ ++ +aa+++L 
  KKY19200.1 543 QALTQILQSFPSNDTTAAACEVLK 566
                 689999999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.47
# Mc/sec: 5165.33
//
Query:       KKY19201.1  [L=466]
Description: putative arginine biosynthesis bifunctional protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.1e-149  496.1   0.4   5.8e-149  495.9   0.4    1.0  1  ArgJ      ArgJ family


Domain annotation for each model (and alignments):
>> ArgJ  ArgJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  495.9   0.4  3.3e-153  5.8e-149       2     376 .]      47     466 .]      46     466 .] 0.93

  Alignments for each domain:
  == domain 1  score: 495.9 bits;  conditional E-value: 3.3e-153
                 EEEEXXSSS.....SXXEEEEEEEEEEEEEEEEEXXSSXXHHHHHHHHHHH.HHS..EEEEEEEEEEXXXSXHHHHHHHHHHHHHHHHHHHTSXGG... CS
        ArgJ   2 aagvaagik..kk.kkdlalivseepasaaavfTknkvkAapvkvsrevlkkkkg..aravvvnsgnANavtgeqGledaeemaeavaealgikee... 92 
                 ++g+++g+k  ++  +dlali+s++p++ aavfT+nk++Aapv+vsr+vl++++g  +ra+v+nsg+ANavtg+ Gledae+m ++v+++ + k +   
  KKY19201.1  47 VSGTHVGVKasNTrFPDLALIASDTPCAGAAVFTTNKFQAAPVRVSRKVLETRQGsgVRAIVINSGCANAVTGKGGLEDAEAMGAEVDKCYKDKDDgkg 145
                 7899*****7522589**********************************9988667**********************************77633334 PP

                 .GEEEEEEEESSXXXXHHHHHHHHHHX....X......HHHHHHHXSSXSSXXEEEEEEEE.....TEEEEEEEEEEXSSSXXXXEE--EEEEEE---- CS
        ArgJ  93 .evlvasTGviGerlpmekieagieklvekle......eeaaeAimTTDtvpKlaavevel.....gkevtiagiaKGaGmihPnmaTmLafittDaav 179
                  + +v+sTGviG+rlp++ki+++i++++++l+       ++a+Ai+TTDt+pKl++++++l     + ++++ag++KGaGmihPnmaT+L++++tDa++
  KKY19201.1 146 gRSIVMSTGVIGQRLPIKKILDKIPTAYSTLDsshnswLTTARAICTTDTFPKLMSTTFTLpstgpSITYSLAGMTKGAGMIHPNMATLLGIMCTDAPI 244
                 599**************************9977888888********************9988743359****************************** PP

                 -HHHHHHHHHHHHHHTGGGB-SSS---SS-EEEEEE--TT..........TT.STTHHHHHHHHHHHHHHHHHHHHHTSTT-S-EEEEEEEEESSHHHH CS
        ArgJ 180 saealqellkeavdksFnsisvDgdtSTnDtvlllAngaa..........eeeeedleefeealtevlqeLakqivrDGEGatklveveVkgakseeeA 268
                 +++alq++l++av++sFnsis+DgdtSTnDtv++lAngaa          +++++d+++++++lt ++q+L++ +vrDGEGatk+v+v+Vk+a+++++A
  KKY19201.1 245 TSAALQSMLTSAVTRSFNSISIDGDTSTNDTVAILANGAAapplahpipnDSRSPDYATMSTVLTGFAQSLSQLVVRDGEGATKFVTVRVKSAPTYKDA 343
                 ***************************************8899*****965559********************************************* PP

                 HHHHHHHHT-HHHHHHHHTT---HHHHHHHHHHSS....S---TTS-EE.............TT..EEEEETTEE----HHHHHHHHH-SSEEEEEE-- CS
        ArgJ 269 kkvaksvanssLvKtAlfGeDanwGRilaavGyag....aeldpekvsv...........llge..vkvlekgepeevdeerakeilkeeeveievdlg 350
                 ++v++ +a+s+LvKtAl+G+DanwGRil+a+Gy++     ++ pe+++v           +  e  +k+l +gepe+vdeera+++l++e++eievdlg
  KKY19201.1 344 HTVGSVIARSPLVKTALYGKDANWGRILCAIGYTQglspEAVVPERTNVsfvpaknsaskN--EgiLKLLVNGEPETVDEERAARLLQDEDLEIEVDLG 440
                 **********************************766666699999999888887765432..156********************************* PP

                 SSSEEEEEEEE---HHHHHHHTT-XX CS
        ArgJ 351 egeeeatvwtcDLsyeYvkiNadYrt 376
                 +g+e+at+w cD+s+eYv+iN+dYrt
  KKY19201.1 441 TGKEDATYWFCDFSHEYVTINGDYRT 466
                 *************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.56
# Mc/sec: 2485.21
//
Query:       KKY19202.1  [L=573]
Description: putative origin recognition complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.4e-118  395.6   0.0   1.9e-118  395.2   0.0    1.2  1  ORC2          Origin recognition complex subunit 2
  ------ inclusion threshold ------
      0.021   15.2   0.0      0.047   14.1   0.0    1.6  1  NTP_transf_3  MobA-like NTP transferase domain


Domain annotation for each model (and alignments):
>> ORC2  Origin recognition complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  395.2   0.0  2.1e-122  1.9e-118       1     331 [.     207     560 ..     207     561 .. 0.97

  Alignments for each domain:
  == domain 1  score: 395.2 bits;  conditional E-value: 2.1e-122
                 XXXXXXXXX-TTTHHHHHHHHHHHHHSHHHHHHHHHHHGGGHHHHHHHHHTT-EEEE--SS--HHHHHHHHSSS----.SSS-EEEE----TT--SHHH CS
        ORC2   1 SnntlsslplLdeeeyerlleklkdthekekekLeklhkklfpqwlfeLeqGFslllyGvGSKrklleeFaeellskr.kdgpvvvvnGylpsltlkdi 98 
                 Snntl sl+lL++eey++ll++++d+h  ek++L +lh++ fpqw fe  +GFs++lyG+GSKrkl+++Fae ++ k+ + ++++++nGy+p+ t++ i
  KKY19202.1 207 SNNTLGSLKLLTHEEYFDLLRNYQDPHDAEKAYLLRLHARAFPQWHFEFVEGFSICLYGWGSKRKLVTKFAEYIHLKWrPTPTIIIANGYTPKATIRTI 305
                 89***********************************************************************999887899999************** PP

                 HHHHHHTT--S.---SSS--HHHHHHHHHHHHHS--S-..S--EEEES-SSSTTTTSHHHHHHHHTTTT-SSSEEEEE--STTHHHH--HHHHTTS-EE CS
        ORC2  99 lseiasallekkeakklsssvaaqlekilslleekeseeksklylvihniDgpsLrkekaqalLarLaaipqIhliasiDhinapllwdssklsqfnfv 197
                 ls +a++++ ++  k+ls++++++++ i s+l+++++++  +++l i+++D+p+Lr++++q+ LarLa++p+I l+a++D +++pllwds+ +sq+nfv
  KKY19202.1 306 LSLLAETIMGDSLPKNLSAQPSETIDVIFSYLANHPPSA--PILLFINSVDAPALRRHATQSFLARLASHPHILLLATADSPTFPLLWDSTLRSQLNFV 402
                 ********999999*********************9995..********************************************************** PP

                 E---------GGGGGG--.-TT---.--.----HHHHHHHHHHS-HHHHHHHHHHHHHHHT.......................-.------------- CS
        ORC2 198 fhdvtTfapysaElsfedevlellgrskrrvggkegakfVLkSLtenarklfklLveeqLe.......................k.keseekkekskkg 272
                 fhd+tT+apy+ Els++d+v+ellgr+++rvgg+eg+ fVL+SL++na++l+++L++e+L+                       +   ++  ++k+ ++
  KKY19202.1 403 FHDCTTYAPYTSELSVVDDVHELLGRKGHRVGGREGVGFVLRSLPDNAKNLYRVLLAEILTvladgipslddegdiedqdqvsdAeAITRRPSHKQGSS 501
                 ****************************************************************************99987764145666777888899 PP

                 ------BHHHHHHHHHHS--SSSGGGHHHHHHHHTTTTSS-B--------BB--S--HH CS
        ORC2 273 seeagveykelynkareefivssemalrtlLkEFkDHklikskkdasgtevlsiplrke 331
                 + e+g++y++ly++a+eefi+ssem++rtlLkEF+DH++i s+kd +gte+l +pl+ke
  KKY19202.1 502 EGEVGIPYSTLYERASEEFICSSEMSFRTLLKEFHDHQMIISRKDGAGTEILGVPLSKE 560
                 999*****************************************************997 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   5.2e-06     0.047      89     141 ..     348     399 ..     285     405 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.2e-06
                   EEEEETT-TT--HHHHHHHHHCHHHHTSSEEEEESSSEEEECCEEEGGGHHHH CS
  NTP_transf_3  89 vlvlacDmPlltpelverllaaaaasgadvvvptyegerghpllfrarllsal 141
                   +++ ++D P l++++ + +la++a++++ ++ +++++ +  pll+ + l+s+l
    KKY19202.1 348 LFINSVDAPALRRHATQSFLARLASHPH-ILLLATADSPTFPLLWDSTLRSQL 399
                   66779******************97765.88888888999*********9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.53
# Mc/sec: 3246.01
//
Query:       KKY19203.1  [L=203]
Description: hypothetical protein UCRPC4_g04577 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0055   17.1   0.9      0.019   15.4   0.9    1.8  1  FUN14     FUN14 family


Domain annotation for each model (and alignments):
>> FUN14  FUN14 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.9     1e-06     0.019       1      89 [.     126     197 ..     126     199 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       FUN14   1 igiGaviGlvtGfalkkvgKlaaiavGggllllqilasqgyikvnwdkiekdveelldrnkdgklgtedeklltenlpfsagFlaGfll 89 
                 i++G+++Glv+G+a+ k +     ++ g   + q+las+g+  v  +k++k v++            + +kl+++n  ++++F + f+l
  KKY19203.1 126 ITTGSILGLVAGLAVSKSA-----VL-GLTQMEQYLASKGIRIVPLEKLQKYVKS-----------VNIAKLVQSNPALKVSFGLTFML 197
                 789***********98864.....34.456789*****************99885...........23358999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1329.42
//
Query:       KKY19204.1  [L=300]
Description: putative pyridoxine biosynthesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.1e-108  361.8   1.8   1.8e-108  361.1   1.8    1.4  1  SOR_SNZ       SOR/SNZ family
      4e-09   36.1   7.1    7.7e-07   28.7   0.4    2.5  2  ThiG          Thiazole biosynthesis protein ThiG
     0.0022   17.1   0.1       0.72    8.9   0.0    2.4  2  Dus           Dihydrouridine synthase (Dus)
  ------ inclusion threshold ------
      0.013   14.7   0.5       0.35   10.0   0.0    2.6  2  NanE          Putative N-acetylmannosamine-6-phosphate epimer
      0.024   13.8   0.0       0.23   10.6   0.0    2.2  2  IGPS          Indole-3-glycerol phosphate synthase
      0.036   13.5   0.1       0.47    9.9   0.0    2.2  2  His_biosynth  Histidine biosynthesis protein
       0.28   10.5   3.8       0.52    9.6   0.4    2.2  2  NMO           Nitronate monooxygenase


Domain annotation for each model (and alignments):
>> SOR_SNZ  SOR/SNZ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.1   1.8    7e-112  1.8e-108       2     207 .]       9     218 ..       8     218 .. 0.97

  Alignments for each domain:
  == domain 1  score: 361.1 bits;  conditional E-value: 7e-112
                 THHHHHHHHTTTSSEEEEESSHHHHHHHHHHT-SEEEE-SS-HHHHHHH-S------HHHHHHHHHH-SS-EEEEEETT-HHHHHHHHHTT-SEEEEET CS
     SOR_SNZ   2 lkvkaglaemlkgGvimdvvnaeqakiaeeaGavavmalervpadirkeggvarmsdpklikeikeavsipvmakvriGhfveaqilealgvdyiDese 100
                 +k+kagla+mlkgGvimdv+n+eqa+iaeeaGa+avmalervpadir++ggv+rmsdp +ikei+eav+ipvmak+riGhfve+qile++gvdyiDese
  KKY19204.1   9 FKLKAGLAQMLKGGVIMDVINPEQARIAEEAGACAVMALERVPADIRAQGGVSRMSDPGMIKEIMEAVTIPVMAKARIGHFVECQILESIGVDYIDESE 107
                 689************************************************************************************************ PP

                 TS--S-SS----GGG-SS-EEEEESSHHHHHHHHHHT-SEEEEES-TTS--THHHHHHHHHHHHHHHHHTTS.-HHH....HHHHHHHHHGGGHHHHHH CS
     SOR_SNZ 101 vltpadeeahidkkkfkvpfvcGarnlgealrriaeGaamirtkGeagtGdvveavrhvrkikeeirklksl.seee....lvalakelkaplelvkev 194
                 vltpad+e+h++k++fkvpfvcG+rnlgealrr+aeGaamirtkGeagtGdvveavrhvr+++++i++++sl + ++    l +la+++++p++l+ e+
  KKY19204.1 108 VLTPADDEFHVEKSHFKVPFVCGCRNLGEALRRVAEGAAMIRTKGEAGTGDVVEAVRHVRTVSRQIAQAQSLlN-SDnipaLRKLARDFEVPYDLLYET 205
                 *********************************************************************99952.333444899*************** PP

                 HHHTTS-S---T. CS
     SOR_SNZ 195 aelgrlpvvnfaa 207
                 a+lgrlpvvnfaa
  KKY19204.1 206 AKLGRLPVVNFAA 218
                 ***********98 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   1.1   0.00011      0.29     135     201 ..      31     103 ..       4     125 .. 0.78
   2 !   28.7   0.4     3e-10   7.7e-07     175     234 ..     210     275 ..     197     285 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00011
                 HHHHHHHHTT-SEBEEB...SSSTTS----S...-HHHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEE CS
        ThiG 135 vlarrleevGcaavmPl...aapiGsglGll...nkealkiiieeakvPvivDAGigspsdaaqamelGadav 201
                   ar  ee+G+ avm l    a i +  G++   ++ ++k i+e +++Pv+  A ig+  +      +G+d +
  KKY19204.1  31 EQARIAEEAGACAVMALervPADIRAQGGVSrmsDPGMIKEIMEAVTIPVMAKARIGHFVECQILESIGVDYI 103
                 4688889********97333588988888651116789*******************9988777777788765 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 3e-10
                 SS-BEEES..---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHH....HHHHHHHHH- CS
        ThiG 175 kvPvivDA..GigspsdaaqamelGadavllntavaeakdpvamArafklav....eaGrlaylag 234
                 ++Pv+  A  G+ +p daa  m+lG+d+v++ + + ++ d  + A+a+  av    +aG la+ ++
  KKY19204.1 210 RLPVVNFAagGVATPADAALMMQLGCDGVFVGSGIFKSGDASKRAKAIVEAVthykDAGVLARVSQ 275
                 56777443349****************************************944444788887765 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0021       5.4     113     133 ..      68      88 ..      29     101 .. 0.76
   2 !    8.9   0.0   0.00028      0.72     182     217 ..     211     245 ..     199     276 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0021
                 HHHHHHCCSSS-EEEEEESES CS
         Dus 113 ivkavvkaveiPvtvkirigi 133
                 ++k++ +av iPv +k rig 
  KKY19204.1  68 MIKEIMEAVTIPVMAKARIGH 88 
                 677777888888888888875 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00028
                 -SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHC CS
         Dus 182 vsipviaNGdIkdaedaqaileetGadgvmigrgal 217
                 ++++ +a G++ ++ da  +++  G+dgv +g g  
  KKY19204.1 211 LPVVNFAAGGVATPADAALMMQL-GCDGVFVGSGIF 245
                 56777899*********999998.********9876 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2     0.041     1e+02      79     116 ..      67     103 ..      22     113 .. 0.55
   2 ?   10.0   0.0   0.00014      0.35     147     181 ..     215     249 ..     194     261 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.041
                 --HHHHHHHHHHH-...-EEEEE-SSHHHHHHHHHTT-SEE CS
        NanE  79 vtieelikkikeky...qllmaDistleeglvakklGvdiv 116
                   i+e++++        +++ a i  + e+ + +++Gvd++
  KKY19204.1  67 GMIKEIMEA----VtipVMAKARIGHFVECQILESIGVDYI 103
                 222222222....2222444555555555555555555554 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00014
                 EEEES---SHHHHHHHHTT--SEEEE-HHHH-HHH CS
        NanE 147 viaeGrintPekakkaieiGvdavvvGsaitrlee 181
                   a G + tP+ a+ ++++G d v vGs i +  +
  KKY19204.1 215 NFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGD 249
                 468899**********************9977655 PP

>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.091   2.3e+02      61      88 ..      20      47 ..      18     101 .. 0.80
   2 ?   10.6   0.0   9.2e-05      0.23     191     252 ..     194     255 ..     169     257 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.091
                TEESBSS--HHHHHHHHTTT.-SEEEEE CS
        IGPS 61 kgliredfdpaeiAkkyeeagAsaiSVL 88
                kg + +d+  +e+A+  eeagA a+  L
  KKY19204.1 20 KGGVIMDVINPEQARIAEEAGACAVMAL 47
                6778888899999999999999887554 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 9.2e-05
                 TTEE-CHHHHHHCHCC-TTSEEEEESSS-SHHHHHHHCCTT-SEEEESHHHHC-TTHHHHHH CS
        IGPS 191 tlevdlntteeLaklvpkdvllvaeSGiktredveklkeegvnafLvGeslmrqedvekair 252
                 ++ev  +   e akl +  v+  a  G++t++d+  + + g +++ vG+ + ++ d++k  +
  KKY19204.1 194 DFEVPYDLLYETAKLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDASKRAK 255
                 6666666666666666667899999*****************************99988776 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.08   2.1e+02     178     201 ..      64      87 ..      34     104 .. 0.64
   2 ?    9.9   0.0   0.00019      0.47     195     225 ..     216     246 ..     192     269 .. 0.61

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.08
                   --HHHHHHHHHHHSSEEEEESS-- CS
  His_biosynth 178 pdleltkelaeavkipviasGGvg 201
                    d  ++ke+ eav+ipv+a   +g
    KKY19204.1  64 SDPGMIKEIMEAVTIPVMAKARIG 87 
                   344556666666666666654444 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00019
                   EEESS--SHHHHHHHHHTTCSEEEESHHHHT CS
  His_biosynth 195 iasGGvgsledlkelksegvdavivgsalye 225
                    a+GGv++++d + + + g+d+v vgs +++
    KKY19204.1 216 FAAGGVATPADAALMMQLGCDGVFVGSGIFK 246
                   3556666666655555666666665554443 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2     0.045   1.2e+02     183     198 ..      67      82 ..      23      88 .. 0.78
   2 ?    9.6   0.4    0.0002      0.52     193     231 ..     210     250 ..     193     283 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.045
         NMO 183 aLvpqvldavdiPviA 198
                  +++++++av iPv+A
  KKY19204.1  67 GMIKEIMEAVTIPVMA 82 
                 57899**********9 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0002
         NMO 193 diPvi..AaGGiidrrgvaaaLalGAsgvqigtrfLltkes 231
                  +Pv+  AaGG+ +  + a ++ lG  gv +g+      ++
  KKY19204.1 210 RLPVVnfAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDA 250
                 5788666*************************987766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.50
# Mc/sec: 1794.53
//
Query:       KKY19205.1  [L=534]
Description: putative c2h2 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.1e-27   93.7   0.6    9.9e-27   92.8   0.6    1.5  1  QCR10        Ubiquinol-cytochrome-c reductase complex subunit
    8.1e-06   26.0  13.3    1.6e-05   25.1   1.4    3.0  3  zf-H2C2_2    Zinc-finger double domain
      0.002   18.4   3.8     0.0041   17.4   3.8    1.5  1  zf-Di19      Drought induced 19 protein (Di19), zinc-binding
     0.0075   16.5   3.7       0.55   10.6   0.7    2.5  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
  ------ inclusion threshold ------
      0.013   15.9  12.1      0.057   13.9   4.7    2.7  2  zf-C2H2      Zinc finger, C2H2 type
      0.048   14.5  18.9      0.057   14.3   3.5    2.9  3  zf-C2H2_4    C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> QCR10  Ubiquinol-cytochrome-c reductase complex subunit (QCR10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.6   3.3e-30   9.9e-27       1      63 []     472     534 .]     472     534 .] 0.98

  Alignments for each domain:
  == domain 1  score: 92.8 bits;  conditional E-value: 3.3e-30
       QCR10   1 vggitlktltrygptlalfGgaagvavlfftsgvPrvqkdiLqkiPvigsyfkkeippeDnpF 63 
                 v g+t++ ++++g+++ +fG+aag+++lff++++Prv+kdiL+k+P++g+y+++ei+peDnpF
  KKY19205.1 472 VEGWTVRDAIKIGTIASGFGVAAGTFALFFFGEIPRVRKDILSKVPIFGDYWVREIAPEDNPF 534
                 579***********************************************************9 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.8   0.00083       2.5      14      26 .]     199     211 ..     192     211 .. 0.84
   2 !   25.1   1.4   5.4e-09   1.6e-05       1      25 [.     214     238 ..     214     239 .. 0.95
   3 ?   -3.4   0.2       5.4   1.6e+04       5       9 ..     269     273 ..     267     274 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00083
   zf-H2C2_2  14 pyeCplCdkaFkt 26 
                 ++ Cp C+k++ +
  KKY19205.1 199 KFPCPNCNKTYLH 211
                 599*******976 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 5.4e-09
   zf-H2C2_2   1 nLrrHirkHtgekpyeCplCdkaFk 25 
                 +L+rH+  Htg++py C lC+++F+
  KKY19205.1 214 HLKRHLLRHTGDRPYMCVLCKDTFS 238
                 79**********************8 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 5.4
   zf-H2C2_2   5 HirkH 9  
                 H +kH
  KKY19205.1 269 HVKKH 273
                 99999 PP

>> zf-Di19  Drought induced 19 protein (Di19), zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   3.8   1.4e-06    0.0041       2      45 ..     199     242 ..     198     252 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.4e-06
     zf-Di19   2 sftCPyCgk.eltvkeLveHvedeHrveskevvCPvCaekvtk.dl 45 
                 +f+CP C+k  l++k L +H+   H+ + ++++C +C+++ ++ d+
  KKY19205.1 199 KFPCPNCNKtYLHAKHLKRHLLR-HTGD-RPYMCVLCKDTFSRsDI 242
                 69*******78**********98.8876.6799*****98765354 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.7   0.00018      0.55       1      21 [.     199     219 ..     199     220 .. 0.94
   2 !    6.3   0.1     0.004        12       2      21 ..     228     247 ..     227     248 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00018
                  ECBBTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz   1 qfYCvlCdKyFksenaldnHl 21 
                  +f C+ C+K++  ++ l+ Hl
   KKY19205.1 199 KFPCPNCNKTYLHAKHLKRHL 219
                  688*****************7 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.004
                  CBBTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHl 21 
                  + CvlC+ +F+ +  l+ H+
   KKY19205.1 228 YMCVLCKDTFSRSDILKRHF 247
                  89**************9997 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   4.7   1.9e-05     0.057       1      23 []     200     222 ..     200     222 .. 0.98
   2 ?    5.9   0.7    0.0066        20       1      20 [.     228     247 ..     228     249 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.9e-05
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 ++Cp C+k++ +  +LkrH+ +H
  KKY19205.1 200 FPCPNCNKTYLHAKHLKRHLLRH 222
                 89********************9 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0066
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                 y C  C+ +F+r++ LkrH 
  KKY19205.1 228 YMCVLCKDTFSRSDILKRHF 247
                 89*****************6 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   3.5   1.9e-05     0.057       1      23 [.     200     222 ..     200     223 .. 0.97
   2 ?   10.7   1.9   0.00026      0.78       1      22 [.     228     249 ..     228     251 .. 0.89
   3 ?   -3.2   0.3         6   1.8e+04      18      23 ..     268     273 ..     267     274 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.9e-05
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 f+Cp C+k++   k+L+rHl++h
  KKY19205.1 200 FPCPNCNKTYLHAKHLKRHLLRH 222
                 89********************9 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00026
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkt 22 
                 + C +C+ +Fs+++ L+rH+++
  KKY19205.1 228 YMCVLCKDTFSRSDILKRHFQK 249
                 78********88888****986 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 6
   zf-C2H2_4  18 rHlkth 23 
                  H+k+h
  KKY19205.1 268 AHVKKH 273
                 599999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       882  (0.049194); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 3400.89
//
Query:       KKY19206.1  [L=241]
Description: putative nadh-ubiquinone oxidoreductase 299 kda [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-27   93.0   1.1    1.5e-24   85.6   0.1    2.5  2  ETC_C1_NDUFA5  ETC complex I subunit conserved region
  ------ inclusion threshold ------
      0.042   14.0   0.1      0.089   13.0   0.1    1.5  1  Ku_PK_bind     Ku C terminal domain like


Domain annotation for each model (and alignments):
>> ETC_C1_NDUFA5  ETC complex I subunit conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.1   1.7e-28   1.5e-24       1      62 [.      27      94 ..      27      98 .. 0.96
   2 !    6.0   0.1    0.0012        11      50      67 .]     170     187 ..     152     187 .. 0.87

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 1.7e-28
  ETC_C1_NDUFA5  1 GLavhpnPreaLialytktLkkLkkiPessvYRqsvEaltkhRlkiVee......eedvekiekkiga 62
                   GL +hp+Pr++Li ly++tL kLk++PessvYRqs EaltkhRlki+ e      ee+ +k++k +++
     KKY19206.1 27 GLFTHPSPRPHLIVLYNQTLAKLKQFPESSVYRQSAEALTKHRLKIISEtkpagyEEWLAKVKKVVEK 94
                   9***********************************************999************99876 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0012
  ETC_C1_NDUFA5  50 eedvekiekkigagqiee 67 
                    + ++ +ie+kigag iee
     KKY19206.1 170 ADQISEIESKIGAGLIEE 187
                    67899***********98 PP

>> Ku_PK_bind  Ku C terminal domain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   9.9e-06     0.089      34      79 ..      49      94 ..      39     104 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.9e-06
  Ku_PK_bind 34 vedslgdssydkaveclkalReeaieeeepelyNdFlrdlkkklqs 79
                +++  ++s y++ +e+l+  R + i+e +p+ y ++l ++kk +++
  KKY19206.1 49 LKQFPESSVYRQSAEALTKHRLKIISETKPAGYEEWLAKVKKVVEK 94
                566677899*********************************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.35s 00:00:00.94 Elapsed: 00:00:00.55
# Mc/sec: 1324.91
//
Query:       KKY19207.1  [L=763]
Description: putative disulfide isomerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-45  153.1   0.0    1.6e-25   89.1   0.0    4.4  3  Thioredoxin    Thioredoxin
      4e-13   49.7   0.0     0.0037   17.2   0.0    4.2  4  Thioredoxin_6  Thioredoxin-like domain
    5.7e-06   26.8   0.3       0.21   12.0   0.0    3.7  3  Thioredoxin_2  Thioredoxin-like domain
    3.6e-05   24.0   0.0       0.65   10.4   0.0    4.2  4  Thioredoxin_8  Thioredoxin-like
     0.0056   16.6   0.0          2    8.4   0.0    3.9  4  HyaE           Hydrogenase-1 expression protein HyaE
  ------ inclusion threshold ------
      0.071   12.8   0.0       0.17   11.6   0.0    1.5  1  VasI           Type VI secretion system VasI, EvfG, VC_A0118
      0.092   12.9   1.4       0.84    9.9   0.1    2.9  3  Thioredoxin_7  Thioredoxin-like
        0.1   12.4   2.2       0.43   10.3   0.0    2.8  3  TraF           F plasmid transfer operon protein
        0.2   11.6   2.1       0.44   10.5   0.0    2.6  4  AhpC-TSA       AhpC/TSA family


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.1   6.5e-17   1.3e-13       5     102 ..      72     192 ..      68     193 .. 0.94
   2 !   89.1   0.0   7.8e-29   1.6e-25       3      99 ..     283     378 ..     281     382 .. 0.92
   3 ?    4.1   0.0     0.023        45      54      92 ..     434     471 ..     419     481 .. 0.81

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 6.5e-17
                  SSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT.........................TSEEEEEETTTSHHHHHHTT-SSSSEEE CS
  Thioredoxin   5 ltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd.........................kvklakvdvdenedlakkyevegiPtlk 77 
                  ++ ++++e+v++    ++v+ y+p+CghC a+aP++++l e +                           ++ +  +++ +  ++++k++v++ Pt++
   KKY19207.1  72 IEGDKWDETVKE--GWWFVKHYSPYCGHCAAIAPTWQTLYEFYYTsspiqsqtkaeqstesslnsfdnfyDFHFGSLNCIAYGEICEKHDVKAWPTFL 167
                  567899****99..*************************9988777889999999******************************************* PP

                  EEETTEEEEEEESS-HHHHHHHHHH CS
  Thioredoxin  78 lfkngkevkkyegarekeklaaflk 102
                  l+k+g  v+k++g+++ +++ +f++
   KKY19207.1 168 LYKDGVLVEKFTGKKNLQEISHFVE 192
                  ********************99987 PP

  == domain 2  score: 89.1 bits;  conditional E-value: 7.8e-29
                  EESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHH CS
  Thioredoxin   3 lvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaa 99 
                  ++lt+e+F++ v  ++++++++FyApwC+hC+alaP++++la+elk+++ + +v++d+++ l+k+ +++g+Pt+++++ g+   +yeg r   +l +
   KKY19207.1 283 VSLTAESFQKLVTTTEEPWFIKFYAPWCAHCQALAPTWDQLAKELKGELNVGEVNCDAEPRLCKDAKIKGFPTMYFLRGGE-RVEYEGLRGLGDLLK 378
                  67899************************************************************************9999.567888887776665 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.023
                  EEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS- CS
  Thioredoxin  54 akvdvdenedlakkyevegiPtlklfkngkevkkyegar 92 
                  ak+  ++++ la++++++  P l++ ++g+ +  y+g +
   KKY19207.1 434 AKIVKTNSAVLADRFKISTWPRLLVSRDGR-PTYYTGLA 471
                  67777889999************9999998.56666655 PP

>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1     0.004         8      29      75 ..     150     195 ..     124     199 .. 0.80
   2 !    9.5   0.0   0.00042      0.84      11     120 ..     319     426 ..     313     440 .. 0.83
   3 !   17.2   0.0   1.9e-06    0.0037      28     126 ..     439     539 ..     429     565 .. 0.81
   4 !   11.5   0.0    0.0001      0.21     106     165 ..     568     628 ..     558     641 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.004
                    --HHHHHHTT--S.SEEEEEETTTTEEEEEETHT--HHHHHHHHHHH- CS
  Thioredoxin_6  29 kskevadklgvke.pavllfrkfdeekvkydgekitvddlkkfiekns 75 
                      +e+++k +vk  p+ ll+++     +k++g+k + +++++f+e++ 
     KKY19207.1 150 AYGEICEKHDVKAwPTFLLYKD-GVLVEKFTGKK-NLQEISHFVEEKL 195
                    34679999**************.78889****96.**********986 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00042
                    HHHHHTTT-T.TSEEEEE--HH...HHHHTT--S.SEEEEEETTTTEEEEEETHT--HHHHHHHHHHH---SEEE-SHHHHHHHHTSS--EEEEEE CS
  Thioredoxin_6  11 iFekvakelkgdvrfgvtkske...vadklgvke.pavllfrkfdeekvkydgekitvddlkkfieknslplvreltpenaeelfeeglppllllf 102
                    +  + akelkg++ +g ++ ++   ++++ ++k+ p+ ++ r+   e+v+y+g      dl k  ++++ + v  ++  +++e  e++  +++l+f
     KKY19207.1 319 TWDQLAKELKGELNVGEVNCDAeprLCKDAKIKGfPTMYFLRG--GERVEYEGL-RGLGDLLKYSRSAMDSDVKDVDAAQFKEMEETE-EVIFLYF 410
                    667899**********998555677*********999999999..5579****9.79**************************77777.8899*** PP

                    E-TTSTTHHHHHHHHHHH CS
  Thioredoxin_6 103 lkkddeeteklkkaiekv 120
                    ++  +  t++  +a+ ++
     KKY19207.1 411 YD--HATTSEDFAALDRL 426
                    *6..45566666666655 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 1.9e-06
                    E--HHHHHHTT--S.SEEEEEETTTTEEEEEETH....T--HHHHHHHHHHH---SEEE-SHHHHHHHHTSS--EEEEEEE-TTSTTHHHHHHHHH CS
  Thioredoxin_6  28 tkskevadklgvke.pavllfrkfdeekvkydge....kitvddlkkfieknslplvreltpenaeelfeeglppllllflkkddeeteklkkaie 118
                    t+s+ +ad +++++ p +l+ r+    ++ y+g     + ++  + +++++  lp v+elt  na e++     +l +l + ++++e ++ k++++
     KKY19207.1 439 TNSAVLADRFKISTwPRLLVSRD--GRPTYYTGLapseMRDFRQVLTWMQSVWLPIVPELTASNAREIMDGHYVVLGALTH-SRPDEFKQGKRELK 531
                    566668888*****999999888..668888888999999****************************9999665555554.35889999999999 PP

                    HHHHHTTT CS
  Thioredoxin_6 119 kvakefkd 126
                    ++a e  d
     KKY19207.1 532 NAALEWMD 539
                    98877655 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.0001
                    TSTTHHHHHHHHHHHHHHTTTT-EEEEEETTGGHHHHH.HTT--GGG-SEEEEEESSSS-E CS
  Thioredoxin_6 106 ddeeteklkkaiekvakefkdkinfaladaksfkrple.ylglsssdlPvivivdsashky 165
                    d+ + +++k++   + ++ ++++ fa++da+ ++r l+  +g++ +++  ++i d+++ +y
     KKY19207.1 568 DQRALRQAKSRRITIREDDRKQVRFAWVDADFWERWLKtTFGIDVQKGERVIINDQDNRRY 628
                    44556777777778888889******************9*****99999999888666554 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.023        45      13     101 ..      91     183 ..      83     191 .. 0.68
   2 !   12.0   0.0   0.00011      0.21       4      98 ..     297     369 ..     294     380 .. 0.80
   3 !    6.1   0.0    0.0074        15      46     103 ..     403     474 ..     378     482 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.023
  Thioredoxin_2  13 tdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkd..........ieenvelarkygvrgtPt.ivfldgkeivarlp 97 
                    ++p C+ C+++  + ++l  +++++   p++++  +ka++   +     +f++            ++ e  +k++v++ Pt +++ dg   v++ +
     KKY19207.1  91 YSPYCGHCAAIAPTWQTL--YEFYYTSSPIQSQ--TKAEQSTESSL--NSFDNfydfhfgslnCIAYGEICEKHDVKAWPTfLLYKDGV-LVEKFT 179
                    478888888888888888..7777666666555..33333322222..23555666888989866889999999*******55588888.777888 PP

  Thioredoxin_2  98 Gyvp 101
                    G  +
     KKY19207.1 180 GKKN 183
                    8655 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00011
  Thioredoxin_2   4 ngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgk..eivarlp 97 
                    +++p ++ f++p+C  C++l  + ++l    +      lk +    + ++ c++e+            l +  +++g+Pt+ fl g       +++
     KKY19207.1 297 TEEPWFIKFYAPWCAHCQALAPTWDQL---AKE-----LKGE--LNVGEVNCDAEPR-----------LCKDAKIKGFPTMYFLRGGerV---EYE 368
                    67888999************9977777...555.....6666..78889******97...........9999********9999988433...444 PP

  Thioredoxin_2  98 G 98 
                    G
     KKY19207.1 369 G 369
                    4 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0074
  Thioredoxin_2  46 fepkavaiwcakekkkafkd...............ieenvelarkygvrgtPt.ivfldgkeivarlpGyvpae 103
                     e ++  ++  +  +++f +               ++ + +la++++++  P  +v  dg+   + ++G+ p+e
     KKY19207.1 403 EEVIFLYFYDHATTSEDFAAldrltlslighakivKTNSAVLADRFKISTWPRlLVSRDGR--PTYYTGLAPSE 474
                    344444444444444444446667777777888866778889999********888*****..66899*99886 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0     0.004       7.9       8      89 ..      90     169 ..      85     173 .. 0.75
   2 !   10.4   0.0   0.00033      0.65       5      44 ..     302     339 ..     298     348 .. 0.83
   3 ?   -0.5   0.0      0.78   1.6e+03      73      92 ..     343     362 ..     328     365 .. 0.79
   4 ?    0.5   0.0       0.4   7.9e+02      69      88 ..     439     458 ..     402     463 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.004
                    E--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGGGS-TTSEE.EE-TT-...HHHHTT-S--TT-SEEEEE CS
  Thioredoxin_8   8 fgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefekylkknkkpwlsvpfddkk...rnklkkkynvkaiPtlvvl 89 
                     ++ +c +c+a+ p+ + lye +        +  s  k e+++e+ l++   +++ + f++ +     ++++k +vka+Pt+++ 
     KKY19207.1  90 HYSPYCGHCAAIAPTWQTLYEFYY---TSSPIQ-SQTKAEQSTESSLNSF-DNFYDFHFGSLNciaYGEICEKHDVKAWPTFLLY 169
                    578899999999999999999997...333333.4455677777888877.899*****99875555688***********7664 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00033
                    EEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-S CS
  Thioredoxin_8   5 lLyfgaswcppckaftpklkelyeklkkkkkveivyvsld 44 
                    ++ f+a wc++c+a  p+ ++l ++lk    +++  v++d
     KKY19207.1 302 FIKFYAPWCAHCQALAPTWDQLAKELK--GELNVGEVNCD 339
                    578***********************9..67777666666 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.78
                    HHTT-S--TT-SEEEEE-TT CS
  Thioredoxin_8  73 klkkkynvkaiPtlvvldkn 92 
                     l+k  ++k++Pt++ l+  
     KKY19207.1 343 RLCKDAKIKGFPTMYFLRGG 362
                    689999*********99865 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.4
                    T-HHHHTT-S--TT-SEEEE CS
  Thioredoxin_8  69 kkrnklkkkynvkaiPtlvv 88 
                     ++  l+++++++ +P+l+v
     KKY19207.1 439 TNSAVLADRFKISTWPRLLV 458
                    4567899999******9876 PP

>> HyaE  Hydrogenase-1 expression protein HyaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.36   7.2e+02      74      97 ..     153     176 ..     148     186 .. 0.84
   2 ?    0.1   0.0      0.39   7.8e+02      69      95 ..     338     364 ..     322     373 .. 0.80
   3 !    8.4   0.0   0.00098         2      67      94 ..     438     463 ..     429     478 .. 0.86
   4 ?    0.6   0.0      0.28   5.5e+02       8      45 ..     589     633 ..     583     641 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.36
                 HHHHCCT-TSSSEEEEEETTEEEE CS
        HyaE  74 alaerfgvlktPsllflrdgeylg 97 
                 ++ e+  v+ +P++l+ +dg ++ 
  KKY19207.1 153 EICEKHDVKAWPTFLLYKDGVLVE 176
                 5778999***********998775 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.39
                 HHHHHHHHHCCT-TSSSEEEEEETTEE CS
        HyaE  69 reqeealaerfgvlktPsllflrdgey 95 
                  + e +l +  +++ +P++ flr+ge 
  KKY19207.1 338 CDAEPRLCKDAKIKGFPTMYFLRGGER 364
                 567788999999***********9985 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00098
                 ETHHHHHHHHHCCT-TSSSEEEEEETTE CS
        HyaE  67 adreqeealaerfgvlktPsllflrdge 94 
                 +   ++++la+rf+++ +P ll+ rdg+
  KKY19207.1 438 K--TNSAVLADRFKISTWPRLLVSRDGR 463
                 4..7899******************997 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.28
                 T.TEEEE-CCCHHHHHHH.......HSEEEEEESS-SS-SSSSS- CS
        HyaE   8 rkglaevdadtlddflka.......agdavlllagDpkrfpEvsD 45 
                 +  +a+vdad  +++lk+       +g  v++   D +r  ++++
  KKY19207.1 589 QVRFAWVDADFWERWLKTtfgidvqKGERVIINDQDNRRYWDTTE 633
                 56799***********99888888889999999999999877765 PP

>> VasI  Type VI secretion system VasI, EvfG, VC_A0118
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   8.3e-05      0.17     103     171 ..     613     678 ..     608     684 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.3e-05
        VasI 103 lkssrvtvsledktaleqeWrvrdsglllesgrGlpaielikkll.saerlvlrsnngaldgltFdlsgl 171
                 +k +rv +  +d+   +  W   +sg+ ++++r   + e+i k++ s ++l  +s+ ga+++  F+++++
  KKY19207.1 613 QKGERVIINDQDN---RRYWDTTESGAFITPSR-TSILETIPKVIsSPPKLRAKSTIGAIENFFFQIKNF 678
                 5666666666444...59***************.677788866551668******************986 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.54   1.1e+03      19      35 ..      85     101 ..      80     105 .. 0.86
   2 ?    9.9   0.1   0.00042      0.84      16      36 ..     297     317 ..     290     325 .. 0.88
   3 ?   -2.3   0.0       2.7   5.4e+03       5      39 ..     390     427 ..     388     442 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.54
                    -EEEEE--TT-HHHHHH CS
  Thioredoxin_7  19 pvlvffgaswcftCqal 35 
                    + +v + + +c++C a+
     KKY19207.1  85 WWFVKHYSPYCGHCAAI 101
                    7799999*******986 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00042
                    HT--EEEEE--TT-HHHHHHH CS
  Thioredoxin_7  16 rgkpvlvffgaswcftCqale 36 
                    ++ p ++ f a wc +Cqal+
     KKY19207.1 297 TEEPWFIKFYAPWCAHCQALA 317
                    67899*************986 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.7
                    SHHHHH.HHHHHHT--EEEEE..--TT-HHHHHHHHHH CS
  Thioredoxin_7   5 dldeal.akaaergkpvlvff..gaswcftCqalerdf 39 
                    d+d+a   +++e++  ++++f  +a+++++  al+r +
     KKY19207.1 390 DVDAAQfKEMEETEEVIFLYFydHATTSEDFAALDRLT 427
                    55665548899999999998866677666666666655 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.76   1.5e+03     137     155 ..      91     109 ..      81     115 .. 0.68
   2 ?   -0.6   0.6      0.47   9.4e+02      13      49 ..     258     294 ..     243     301 .. 0.58
   3 ?   10.3   0.0   0.00022      0.43     132     195 ..     301     355 ..     286     364 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.76
        TraF 137 yrgkcpyceaqapilqafa 155
                 y++ c+ c+a ap+ q + 
  KKY19207.1  91 YSPYCGHCAAIAPTWQTLY 109
                 6677788888888777664 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.47
        TraF  13 eekkekakppkaakpalkeptseesatesaaelrkel 49 
                 + +++k++ppk++k  +++ ++  s   +a+ ++k +
  KKY19207.1 258 KLEAPKSAPPKKEKTGPTPNQQGTSVSLTAESFQKLV 294
                 3344455555555555555555555555555555554 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00022
        TraF 132 gLlfFyrgkcpyceaqapilqafadky..glevraVsvdgrplpelpnarvdkgqaarlgvkrtPa 195
                  ++ Fy++ c  c+a+ap+ +++a++   +l v  V++d +p   l +           ++k +P+
  KKY19207.1 301 WFIKFYAPWCAHCQALAPTWDQLAKELkgELNVGEVNCDAEPR--LCK---------DAKIKGFPT 355
                 5788*********************986679999999999987..544.........455555555 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.4   6.8e+03       5      29 ..      16      40 ..      15      40 .. 0.90
   2 ?   -3.6   0.2       4.8   9.6e+03      26      53 ..      84     110 ..      77     112 .. 0.78
   3 ?   10.5   0.0   0.00022      0.44      24      77 ..     297     348 ..     265     359 .. 0.73
   4 ?   -2.1   0.0       1.7   3.5e+03       7      38 ..     385     416 ..     381     421 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.4
                ----EEESTTCEEEECHHHTTSEEE CS
    AhpC-TSA  5 apdfelknadgetvslsdykgkpvv 29
                +p f +++++g   s+++  gkp+v
  KKY19207.1 16 VPGFAAPQEEGSALSVEEAIGKPAV 40
                799*************999999987 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.8
                 SEEEEEEESTST-CCHHHHHHHHHHCHH CS
    AhpC-TSA  26 kpvvlffypkdwcpvCttelpalaklye 53 
                  +  +  y+   c +C + +p  + lye
  KKY19207.1  84 GWWFVKHYSP-YCGHCAAIAPTWQTLYE 110
                 3777778888.89999999999888886 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00022
                 TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHH CS
    AhpC-TSA  24 kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfi 77 
                   +p  + fy+  wc +C++ +p   +l++e+k   ++v  v++d + ++ k +
  KKY19207.1 297 TEEPWFIKFYAP-WCAHCQALAPTWDQLAKELK-GELNVGEVNCDAEPRLCKDA 348
                 447999******.*******************9.67888888888887766655 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 1.7
                 --EEESTTCEEEECHHHTTSEEEEEEESTST- CS
    AhpC-TSA   7 dfelknadgetvslsdykgkpvvlffypkdwc 38 
                 d  +k+ d  +++  +   +++ l+fy ++ +
  KKY19207.1 385 DSDVKDVDAAQFKEMEETEEVIFLYFYDHATT 416
                 55666666666555444556999999988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (763 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      666  (0.0371465); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.52
# Mc/sec: 4435.16
//
Query:       KKY19208.1  [L=261]
Description: putative electron transfer flavoprotein beta-subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-42  143.1   0.2      1e-41  142.8   0.2    1.1  1  ETF       Electron transfer flavoprotein domain


Domain annotation for each model (and alignments):
>> ETF  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.8   0.2   5.8e-46     1e-41       4     181 ..      30     217 ..      27     218 .. 0.95

  Alignments for each domain:
  == domain 1  score: 142.8 bits;  conditional E-value: 5.8e-46
                 EE-EC.CCCE-HHHHHHHHHHHHHHHH.HT.--EEEEEEES....S-CHHHHHHCT-SEEEEEE-GGGSS-..-CCHHHHHHHHHHHHC--SEEEEESS CS
         ETF   4 laehgvdgklnpvdlealeaArrlkek.ag.gevtavvvGppeaeealrealaamGadkvilvddpalagy..daeatakalaalikkedpdlvlagat 98 
                 ++ +g + +lnp+d+  +e+A+r++e+ +   ++  +++Gp+++ ++lr+a+a mGad+ i+v+ p+  +   +++ +ak+l+++++ked +lv++g++
  KKY19208.1  30 IDSNGLKHSLNPFDELSIEEAVRFRERkLPvSDILTISAGPAKCSDTLRTAMA-MGADRSIHVEVPDGPETslEPLGVAKMLKKVVEKEDRNLVILGKQ 127
                 67788999*******************866799********************.*************9988789************************* PP

                 CC.H..HHHHHHHHHHCT-EEEEEESEEEEETCC...EEEEEECCCCTEEEEEE-TSSSEEEEE-TTSS--.....--S-TT---EEEE--HHH CS
         ETF  99 ai.g..kqvaprlAalLgvplitdvteleveggk...ltvtRpieggnglaevveadlpavltvrpgafep.....aaimaakkkeveevevad 181
                 ai +  +q++++lAalL++p++t+++++e++ ++   +tvt++++g  g+ e+v+a+lp ++t++ +++ep     ++im+akkk++e+v+++d
  KKY19208.1 128 AIdDdsGQTGQMLAALLNWPQATQASKVEIS-EDlssVTVTKEVDG--GV-ETVKASLPMIITTDLRLNEPryaslPNIMKAKKKKLEKVTLKD 217
                 **66**************************8.5559**********..**.****************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 1636.63
//
Query:       KKY19209.1  [L=165]
Description: putative sulfur metabolism negative regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-28   97.8   0.5    4.8e-28   97.0   0.5    1.4  1  Skp1      Skp1 family, dimerisation domain
    7.2e-24   83.7   0.4    1.7e-23   82.6   0.2    1.7  2  Skp1_POZ  Skp1 family, tetramerisation domain
  ------ inclusion threshold ------
      0.073   13.9   1.0       0.14   13.0   1.0    1.5  1  Trnau1ap  Selenocysteine tRNA 1 associated proteins
       0.12   12.6   0.0        1.4    9.2   0.0    2.1  1  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> Skp1  Skp1 family, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   0.5   1.1e-31   4.8e-28       1      48 []     115     162 ..     115     162 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.0 bits;  conditional E-value: 1.1e-31
        Skp1   1 kgLldltcktvAdmikgktpeeiReiFnIenDftpEEeeeirkEneWa 48 
                 k Lld++cktvA+mikgk+peeiR++FnI+nDftpEEe +ir+EneWa
  KKY19209.1 115 KALLDVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEEDQIRRENEWA 162
                 56*********************************************8 PP

>> Skp1_POZ  Skp1 family, tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.2   3.8e-27   1.7e-23       3      62 ..       7      67 ..       5      68 .. 0.95
   2 ?   -2.9   0.0       1.8   8.1e+03      24      32 ..     123     131 ..     122     136 .. 0.78

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 3.8e-27
                EEEEETTSCEEEEEHHHHTTSHHHHHHHHCTCCCGT.TCEEETTS-HHHHHHHHHHHHHCH CS
    Skp1_POZ  3 ivLqSsDgesfeveeavakkSktikhmiedlgdddk.priplpnvtskiLekvieYckhhk 62
                + L SsDg ++ v+++va++S++ik+m+edlg+  + ++ip+pnv++++L+kvie+c+hhk
  KKY19209.1  7 LILASSDGVEISVDRDVAERSVLIKNMVEDLGEAATsEPIPIPNVNEAVLKKVIEWCQHHK 67
                6799*****************************999999*********************8 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.8
                 HHHHHHHHC CS
    Skp1_POZ  24 ktikhmied 32 
                 kt+++mi +
  KKY19209.1 123 KTVANMIKG 131
                 789999975 PP

>> Trnau1ap  Selenocysteine tRNA 1 associated proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.0   3.2e-05      0.14      49      83 ..      67     101 ..      31     112 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.2e-05
    Trnau1ap  49 tqeaeeqdedeledpnleldveelNkefmersEeL 83 
                 +++  + +ed+++  + + d+ee++++fm+   e+
  KKY19209.1  67 KTDPPQSAEDDSDSRKKTTDIEEWDQKFMQVDQEM 101
                 34445667888889999************976653 PP

>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0003       1.4      31     101 ..      24     119 ..       7     128 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0003
                 HHH-HHHHHHHTSTTTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC-..........................CGGGHHHHHHHHHHHT-HHHHH CS
         BTB  31 aarSpyFkalftskeieessvseielddvepeafealLefiYtgeleit..........................seenleelLaaadllqiprlkk 101
                 a rS   k+++++   e+++++ i++++v+  ++++++e++   +++ +                          ++e+l e++ aa++l+i++l +
  KKY19209.1  24 AERSVLIKNMVEDL-GEAATSEPIPIPNVNEAVLKKVIEWCQHHKTDPPqsaeddsdsrkkttdieewdqkfmqvDQEMLFEIILAANYLDIKALLD 119
                 78999999999999.67777778****************9999999988777777777777777777777777776677777777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       947  (0.0528195); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1108.62
//
Query:       KKY19210.1  [L=278]
Description: putative fg-gap repeat domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-11   42.9   0.0    9.6e-11   42.4   0.0    1.2  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
    1.7e-07   31.4   0.0    2.2e-07   31.1   0.0    1.2  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase
    0.00017   21.8   0.1    0.00032   20.9   0.1    1.4  1  Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family
  ------ inclusion threshold ------
       0.24   12.0   0.9       0.59   10.8   0.9    1.6  1  LAMTOR         Late endosomal/lysosomal adaptor and MAPK and 


Domain annotation for each model (and alignments):
>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   2.1e-14   9.6e-11       5     177 ..      80     258 ..      79     260 .. 0.82

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 2.1e-14
                    HHHHTCTTBCCHCHHCCCCCCCHHHTT-EEEEE.EEHCCH-H............HHHHHHHHCTGGG-T..........SEEEEE--CCCCCTT-- CS
  Lipase_GDSL_2   5 SiTaGygadgggrsypaylarllaarlgldvvnnlgvsGatt..........allrllerlrdllrlkp..........dlvtiliGtNDlgrgvp 80 
                    Si +Gyg+++g++   +   ++l+++l  +  + +++ G+ +          ++ ++++r+ +  + ++          ++ ++++GtND+ ++ +
     KKY19210.1  80 SIVYGYGSTTGNGFRLDT-ISQLNEKL--SPKV-FACVGDISsgnsshsaysGSVAWPGRVLTQVQSNAskyldnhacpKITLVHAGTNDMVFNLD 171
                    9******98444444444.57888888..6666.888888333556798999889999999865555557888899999***************** PP

                    HHHHHHH..HHHHHHHHCCC...GEEECEEEEE-TTT-TTSTCCHHHHHHHHHHHHHHHHHH.CT-EEE-HHHHHHHCCCCCGGBBTTS.SSB-HH CS
  Lipase_GDSL_2  81 aaaaaandnleelidalraaapgarilvlgplpptpeaaadarelnaviaaynealrevaae.egvpfvDlhdaladsgerladlladdglHPnaa 175
                     ++a ++  l +l+d+l + +p+  i+v++ +p+   + ++a   +  + ++ +++ + a+e  +++ vD+h++++  +      l+d  +HPn+ 
     KKY19210.1 172 RKKAPQR--LGSLLDDLFDYCPDMSIFVAQLIPSKIKTVEQAI--ETFNSEIPAIVDKRANEgRKIVTVDMHSVVQTKN------LYDR-IHPNDH 256
                    **99999..******************8888888888877765..59999999999999999*********99999987......3344.****** PP

                    HH CS
  Lipase_GDSL_2 176 Gy 177
                    Gy
     KKY19210.1 257 GY 258
                    *9 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   4.8e-11   2.2e-07       7     198 ..      80     263 ..      29     265 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 4.8e-11
                  HHHHTTTHHHHHHHCCCCEECCCTTC.................GCEEEEEEECTTHHHHHHHCCHECTTTECHHHHHCTTSEEEEE--CTCC-EECSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL   7 SltdGdgaatlntiqlktpknlnefdl................aldrianignkgasdnelqqllnkyplkseqlkalhpdlviislGtNDsnlgkks 88 
                  S++ G+g++t+n  +l+t + lne+                     +   +++ g  +++ q +       ++    + p++ ++  GtND+      
   KKY19210.1  80 SIVYGYGSTTGNGFRLDTISQLNEKLSpkvfacvgdissgnssHSAYSGSVAWPGRVLTQVQSNA-----SKYLDNHACPKITLVHAGTNDM------ 166
                  78889999999999999988888876688788887777554442222222222222222222222.....23333346778***********...... PP

                  CTTTCEEHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSTCHCTCCCCHCCHHHHHHHHHHHHHHHHHHHH.....HCTEEEECHHHHHHHTHCCGCH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL  89 tdaakkeaeeyiknlreaikelkeegapkaivvlvsppglgpqeekdakklgekgnefvgeynqrlndlae.....kdgfavvDlydelqglsgieql 181
                      +++  ++ ++l ++++ l ++  p + +++  +++             +++ ++++ +n+++ ++++     + +++ vD+++  q +    +l
   KKY19210.1 167 --VFNLDRKKAPQRLGSLLDDLFDYC-PDMSIFVAQLIPSKI----------KTVEQAIETFNSEIPAIVDkraneGRKIVTVDMHSVVQTK----NL 247
                  ..999999999999999999999999.999999998666555..........79999999999999999999999999*************9....88 PP

                  CHTSSSB-HHHHHHHHH CS
                  xxxxxxxxxxxxxxxxx RF
  Lipase_GDSL 182 kaDglHpsekgyeklae 198
                  + D +Hp++ gy ++a+
   KKY19210.1 248 Y-DRIHPNDHGYLLMAN 263
                  8.*************96 PP

>> Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   7.1e-08   0.00032      66     174 ..     165     266 ..     148     270 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 7.1e-08
  Lipase_GDSL_3  66 dllpNasaeeirerleyfvktlrkahPktpillvedlsttkglvdeklekeveaknkaleelvkklkkekekklylisskellgkdeeatvdgiHp 161
                    d++ N + ++  +rl  +++ l +  P+  i++ + +  + ++v++    ++e++n+ +  +v k  +e+ +k+  ++ ++++  + ++ +d iHp
     KKY19210.1 165 DMVFNLDRKKAPQRLGSLLDDLFDYCPDMSIFVAQLIPSKIKTVEQ----AIETFNSEIPAIVDKRANEG-RKIVTVDMHSVV--QTKNLYDRIHP 253
                    88999******************************88888887777....66778888888888875554.568888888844..45678****** PP

  Lipase_GDSL_3 162 sdlGllryadale 174
                    +d G+l +a++  
     KKY19210.1 254 NDHGYLLMANTWV 266
                    *******999765 PP

>> LAMTOR  Late endosomal/lysosomal adaptor and MAPK and MTOR activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.9   0.00013      0.59      41      66 ..      30      56 ..      20      59 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
      LAMTOR 41 eaLnkIvqetsdnlIDI.Saidssgiv 66
                 + ++I  ++++n+IDI S+i+   i+
  KKY19210.1 30 VNVQDIALNAAQNVIDIvSHISDVTIM 56
                567889999************998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1773.89
//
Query:       KKY19211.1  [L=155]
Description: putative peptidyl-trna hydrolase 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-15   55.9   0.0    6.1e-15   55.6   0.0    1.1  1  Pept_tRNA_hydro  Peptidyl-tRNA hydrolase


Domain annotation for each model (and alignments):
>> Pept_tRNA_hydro  Peptidyl-tRNA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   3.4e-19   6.1e-15      52     158 ..       1     127 [.       1     134 [. 0.76

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 3.4e-19
                      GGGHHHHHHHHHH.HCT--...........GEEEEEEETTSSTTEEEE..EESS--TT-HHHHHHHHHH......T-S-SEEEEEEE---ST-C CS
  Pept_tRNA_hydro  52 mNlsGeavkellk.fykiese.........eilvvhDdldlplgkirl..kkkgssgghnGlksiikkl......gtekfvRlriGIgrpekak 127
                      mN+sG +++ +l  f++ +++          ++ +hD+++lp+ ++    +  +s++ghnGl+si   l      +  ++++l iGIgrp+++ 
       KKY19211.1   1 MNESGPSLHTALLtFLRQSPSasgpnnpktGLILLHDEMELPPSTLSPprSSTTSNKGHNGLRSIWPLLqqsrliNDIEIMKLGIGIGRPDSKA 94 
                      99999999877663444332223444566799**************86335778899********8777222333455799*********9977 PP

                      GG.HHHHCTSB-HHHHHC.HHHHHHHHHHCHHH CS
  Pept_tRNA_hydro 128 kk.vadyVLskfskeeek.leevlekaaealee 158
                      ++ v++yVL k++ ee+  +e++ eka +a+e 
       KKY19211.1  95 SDvVSKYVLRKLTWEEKMgIEALTEKALDAIEG 127
                      787999*******888777***99999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 1019.12
//
Query:       KKY19212.1  [L=309]
Description: putative protein n-terminal asparagine [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.047   13.0   0.0      0.074   12.4   0.0    1.4  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.1e-06     0.074      90     156 ..      30     113 ..      11     165 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.1e-06
                   TEEEEEEEEEEEETTSEEEEEEE-SS--...EECTTS...CECCGHHTSCS...................-SSS-EEEETTE....EEEEEEGGGG CS
  CN_hydrolase  90 gklqayntavlldldgklvgkyrKlhLf...pgeprp...ptaverelfep...................gdgipvfdtpvg....kiGaaiCyei 156
                   +++  yn+ v+++++g++++ yrK+ L    + ++++    +++   l+ +                   gd         g    k+ a iC +i
    KKY19212.1  30 PSY--YNALVFVSPSGQMLAHYRKTFLYytdE-IWASentDGFFSGDLPFRapkltnarqtrpssisdacGD---------GgaemKVAAGICMDI 113
                   556..*********************987432.443300134444444444777777766655555444433.........233447777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1877.71
//
Query:       KKY19213.1  [L=365]
Description: hypothetical protein UCRPC4_g04587 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2312.55
//
Query:       KKY19214.1  [L=280]
Description: putative mucin family signaling protein msb2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.16   11.8   0.1       0.28   11.0   0.1    1.3  1  Adeno_E3_CR2   Adenovirus E3 region protein CR2


Domain annotation for each model (and alignments):
>> Adeno_E3_CR2  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   1.5e-05      0.28       4      37 ..     175     208 ..     173     209 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.5e-05
  Adeno_E3_CR2   4 stiaIivaVvvGlaiIiicmlyYaCcYrkhraqk 37 
                   s ++I ++V++G a+    m+  a +Yrk +a +
    KKY19214.1 175 SSVGIATGVIAGAALYGTAMFFVAKRYRKRKAAH 208
                   679**************************99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1882.21
//
Query:       KKY19215.1  [L=747]
Description: putative alpha beta hydrolase fold-1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-20   73.1   0.0      3e-20   72.2   0.0    1.4  1  Abhydrolase_4  TAP-like protein
    5.8e-13   49.1   0.0    0.00016   21.4   0.0    3.2  3  Abhydrolase_1  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.0   3.4e-24     3e-20       2     101 ..     465     570 ..     464     572 .. 0.87

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 3.4e-24
  Abhydrolase_4   2 pvfgaalaesllsCagwpvspqrprdestakg.....aapvLllqnerDpaTPyegakklakalggavlvtvegeGHgala.agntCvdkavdaYL 91 
                    p++g +++   + C gw+++p++  +   ++      ++p+Ll++n++Dp+TP++ a +++ + +g+v++t++++GH++l  + n+C  + v+aY+
     KKY19215.1 465 PTVGPFWSAIAMACFGWQFRPKWRFEGPFVTAeqnatNHPILLIGNTGDPVTPLRNAFAASAKHEGSVVLTQNSNGHCSLLpTANECTARYVRAYF 560
                    78999************998887755433211122336********************************************************** PP

  Abhydrolase_4  92 ltGelpaddt 101
                    ++G++p++++
     KKY19215.1 561 NDGTMPEQGA 570
                    ******9986 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.8e-08   0.00016       1      51 [.      96     151 ..      96     230 .. 0.79
   2 !   21.4   0.0   1.8e-08   0.00017      77     107 ..     258     291 ..     248     317 .. 0.81
   3 ?    2.4   0.0     0.011     1e+02     211     236 ..     498     528 ..     430     545 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.8e-08
                    SEEEEE-STTTCGGGGTTGHHHHHHHHT.....TSEEEEEEETTSTTSSSTTTGB. CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakd.....gfdvillDlrGvgySspapacin 51 
                    +++v+++G+p +s+v   r  +  +++      +fd++ +D+rGv++S+p   c  
     KKY19215.1  96 GPIVLNPGGPSGSGVSLVRRAGHKIQRIvdgtkHFDILSFDPRGVAFSEPNGHCFA 151
                    69*************77777888888878888******************999954 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 1.8e-08
                    EEEETHHHHHHHHHHHHHGGGEEEEEEESE...C CS
  Abhydrolase_1  77 lvGhSmGGmialayaaeyperVkalvllga...i 107
                    ++G+S+G+ ++ ++ +++p+rV +++l+g    +
     KKY19215.1 258 YWGFSYGTILGNTFVSLFPDRVGRVILDGVadaP 291
                    9****************************95442 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.011
                    HS....EEEEEEETTCSSSCH.HHHHHHHHC CS
  Abhydrolase_1 211 la....ptlvisgtsDplvpp.kaledlaql 236
                          p+l+i+ t Dp++p  +a   +a++
     KKY19215.1 498 QNatnhPILLIGNTGDPVTPLrNAFAASAKH 528
                    222336**************96666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 4819.22
//
Query:       KKY19216.1  [L=309]
Description: putative transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.065   12.8   0.1       0.11   12.1   0.1    1.3  1  TDH       Vibrio thermostable direct hemolysin


Domain annotation for each model (and alignments):
>> TDH  Vibrio thermostable direct hemolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1     6e-06      0.11      41     124 ..      55     148 ..      43     163 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6e-06
                 SSEEEE---SS-SSEEEEEEEEESSEEEEEEEEETTEEEEEEE......EEEEETTEEEEEEE....EES----SSHHHHHHHH---GGGSSEE CS
         TDH  41 nrnvkrkpykdvygqsvfttsgtkwltsymtvnindkdytmaa......vsgyksghsavfvk....sdqvqlqhsydsvanfvgededsipsk 124
                  r+   +p++d  gq  f  +  + lts m  +++     +aa        gy+ g +  fv+    s+  +l  syd    +    +dsip+ 
  KKY19216.1  55 GRDALVRPFDDNQGQRGFMITAYRTLTSQMIEDLKRDSAKFAAenrqnrARGYRPGTTVDFVHhvheSGSNELVVSYDQSETYASAYDDSIPTT 148
                 5677789************************999987777776333333579******99995444489999*******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1998.85
//
Query:       KKY19217.1  [L=413]
Description: hypothetical protein UCRPC4_g04591 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0029   17.8   0.0     0.0062   16.8   0.0    1.4  1  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.5e-07    0.0062      12      45 ..      16      52 ..      10      72 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.5e-07
                -EEEEETTTEEEEE-HHHHHHH-HHHHHHHTST...T CS
         BTB 12 DvtlvvgdgkefkahkavLaarSpyFkalftsk...e 45
                Dv ++vg ++++  h  vL   S+yF++l+ s+   +
  KKY19217.1 16 DVLIYVGPRQRYELHANVLRRNSSYFEKLLASNnaaQ 52
                9*******************************94330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 2700.31
//
Query:       KKY19218.1  [L=652]
Description: putative glycosyltransferase family 71 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-36  124.1   0.0    5.2e-35  121.1   0.0    2.4  3  Mannosyl_trans3  Mannosyltransferase putative


Domain annotation for each model (and alignments):
>> Mannosyl_trans3  Mannosyltransferase putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.1   0.0   2.9e-39   5.2e-35       2     255 ..     136     376 ..     135     405 .. 0.86
   2 ?   -2.8   0.0      0.18   3.2e+03     260     274 ..     453     470 ..     434     470 .. 0.69
   3 ?   -1.2   0.0     0.057     1e+03     212     237 ..     548     569 ..     543     579 .. 0.80

  Alignments for each domain:
  == domain 1  score: 121.1 bits;  conditional E-value: 2.9e-39
  Mannosyl_trans3   2 kGIVisgggkesllalrlIkvLr.algnkLPIeivikk.eelekefcekilpaaeepkqevwfvnakcvlnedylgkefk..gfqnKalAllfs 91 
                      +GIVi+ g+k    a  lI+ +r al+++LPIei + + ++l  + ++ i +     + +++ +++++  +++ +g + +  g+++K +All++
       KKY19218.1 136 QGIVILTGKKTFRYACHLIANIRfALNSTLPIEIAYAGdNDLPIQYRNYITS----LSHNITLLDVEPFFDSESIGVSEEdgGWAVKPFALLAT 225
                      7**********************6799*********************9999....99****************999666878*********** PP

  Mannosyl_trans3  92 sFeevllLDaDnvplknpdklFeseeYkktglllwkdrdlwkrstspkfyeiaenklepskeeskyfgkkerekeseevplhdlfgtipdhsse 185
                       F+ v+lLDaD+v+l++p+ lF++ +Y +tg+ l+ dr lw    +++ +  ++ +l+  ++ s +++             +++    +    +
       KKY19218.1 226 AFSSVILLDADAVLLQPPEILFQTSGYIQTGISLYHDRLLWPGGFPERHQWWVN-HLSHASPLSATTNR------------SKVIVGPYAEEAD 306
                      ********************************************7777777777.77777776666652............334444666699* PP

  Mannosyl_trans3 186 sGlvvinKkk..hlktLllalylnlygpk...ykllsqgaagegdKEtfwlaahvlgekYyfvkekaaaiGeltk 255
                      sGl+v++K++   + +Ll ++  n    +   +++      g gdKE +w++++++g +Y++++++aa+iGe ++
       KKY19218.1 307 SGLIVLDKSRlgVFMGLLHICWQNTKSVRkdyTYS-----MGYGDKESWWFGFELTGVEYSMEDHYAAIIGEAED 376
                      ********985568888888888877322333333.....5667*************99************9886 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.18
  Mannosyl_trans3 260 k...seskeicsaqlghl 274
                      +   ++ ++ics q++h+
       KKY19218.1 453 SsshRRRQQICSFQIAHV 470
                      144577889******996 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.057
  Mannosyl_trans3 212 kykllsqgaagegdKEtfwlaahvlg 237
                      k+++++++    + KE+f +aa+++ 
       KKY19218.1 548 KVPSCMLE----AKKELFAVAAAAAA 569
                      57777777....99*****9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 4251.23
//
Query:       KKY19219.1  [L=629]
Description: hypothetical protein UCRPC4_g04593 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 3968.72
//
Query:       KKY19220.1  [L=327]
Description: hypothetical protein UCRPC4_g04594 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0005   20.7   7.4       0.25   12.3   0.1    3.4  3  zf-C2H2_4    C2H2-type zinc finger
    0.00092   19.5   2.5      0.036   14.4   2.7    2.4  1  zf-C2H2_2    C2H2 type zinc-finger (2 copies)
     0.0056   16.5   0.3       0.15   11.9   0.2    2.5  2  zf-C2H2_9    C2H2 type zinc-finger (1 copy)
  ------ inclusion threshold ------
      0.065   13.5   0.1        4.1    7.8   0.0    2.6  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
      0.075   12.9   0.3        1.2    9.1   0.0    2.4  2  DELLA        Transcriptional regulator DELLA protein N termin
       0.12   12.9  15.3        0.2   12.2   0.6    3.4  4  zf-C2H2      Zinc finger, C2H2 type
       0.13   12.6   0.0       0.36   11.1   0.0    1.6  1  V-SNARE_C    Snare region anchored in the vesicle membrane C-


Domain annotation for each model (and alignments):
>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   0.00019      0.49       2      21 ..     181     200 ..     180     202 .. 0.92
   2 !   12.3   0.1   9.9e-05      0.25       1      20 [.     228     247 ..     228     250 .. 0.93
   3 ?   -2.3   0.3       4.6   1.2e+04       1       7 [.     298     305 ..     298     310 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlk 21 
                 +C+ C ++F +k++L+ H+ 
  KKY19220.1 181 ECRTCYRVFETKQKLSEHIM 200
                 6*****************86 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 9.9e-05
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHl 20 
                 ++C +Cg+ F ++ +L +H+
  KKY19220.1 228 YICFFCGTGFETRGSLDKHI 247
                 89*****************8 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 4.6
   zf-C2H2_4   1 fkCpi.Cg 7  
                 ++C++ C 
  KKY19220.1 298 YRCEFgCF 305
                 78988663 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   2.7   1.4e-05     0.036       1      77 [.     181     254 ..     181     265 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.4e-05
   zf-C2H2_2   1 eClfcekkskeveelleh.mskkhgffipereylvdleglleylrekiee.kleClyCekefkslealreHmkkkgHck 77 
                 eC  c + +++ ++l eh m + h++  +      + +++l   ++k ++ +++C++C++ f+++ +l +H+ k +H +
  KKY19220.1 181 ECRTCYRVFETKQKLSEHiMASRHQMEYQ-----HKTQNVLWPDKRKAQRpGYICFFCGTGFETRGSLDKHIDKFRHGR 254
                 5999****999999999956789999988.....667888888888888879**********************99965 PP

>> zf-C2H2_9  C2H2 type zinc-finger (1 copy)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.2   5.9e-05      0.15       2      32 ..     180     210 ..     179     217 .. 0.91
   2 ?    1.8   0.0     0.084   2.2e+02       3      22 ..     229     248 ..     228     262 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.9e-05
                 -B-TTT--B-SSHHHHHHHHHHHTSSS--HH CS
   zf-C2H2_9   2 plCPvCevkfnswkdlseHilsaasksdaeH 32 
                 p C  C+  f++ ++lseHi++  ++ +++H
  KKY19220.1 180 PECRTCYRVFETKQKLSEHIMASRHQMEYQH 210
                 6799*****************9999999998 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.084
                 B-TTT--B-SSHHHHHHHHH CS
   zf-C2H2_9   3 lCPvCevkfnswkdlseHil 22 
                 +C  C   f++  +l +Hi 
  KKY19220.1 229 ICFFCGTGFETRGSLDKHID 248
                 899***************94 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.058   1.5e+02       3      21 ..     181     199 ..     179     199 .. 0.92
   2 ?    7.8   0.0    0.0016       4.1       2      21 ..     228     247 ..     227     248 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.058
                  BBTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz   3 YCvlCdKyFksenaldnHl 21 
                  +C +C + F++ + l +H+
   KKY19220.1 181 ECRTCYRVFETKQKLSEHI 199
                  699*************997 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0016
                  CBBTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHl 21 
                  + C  C   F++  +ld+H+
   KKY19220.1 228 YICFFCGTGFETRGSLDKHI 247
                  89*****************8 PP

>> DELLA  Transcriptional regulator DELLA protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00047       1.2      15      56 ..      34      74 ..      31      83 .. 0.84
   2 ?    1.2   0.1      0.13   3.4e+02      49      66 ..     128     145 ..     123     147 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00047
       DELLA 15 dladVAqkLEqLemvlgaaqedglsqlasdtvhynPSdlssw 56
                +l  + +++E+L  +l++++  ++ ql+ +t hy P +  sw
  KKY19220.1 34 ELDAIKRRIEELAAALSKSNAIKVVQLTIQTQHYFPDH-HSW 74
                56677899*************99***********9954.566 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.13
       DELLA  49 nPSdlsswvesmLselna 66 
                 +P d+  w+ + + + ++
  KKY19220.1 128 DPDDINEWIPTFMCDWDP 145
                 8********999887765 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.6   0.00021      0.55       2      21 ..     181     200 ..     181     204 .. 0.90
   2 ?   12.2   0.6   7.9e-05       0.2       1      22 [.     228     249 ..     228     252 .. 0.90
   3 ?   -3.8   0.0         7   1.8e+04       5      10 ..     263     268 ..     263     269 .. 0.81
   4 ?   -2.4   0.5       3.2   8.3e+03       1       6 [.     298     304 ..     298     308 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00021
                 EETTTTEEESSHHHHHHHHH CS
     zf-C2H2   2 kCpdCgksFkrksnLkrHir 21 
                 +C  C ++F +k  L  Hi+
  KKY19220.1 181 ECRTCYRVFETKQKLSEHIM 200
                 5*****************97 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 7.9e-05
                 EEETTTTEEESSHHHHHHHHHC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirt 22 
                 y C  Cg  F ++ +L +Hi +
  KKY19220.1 228 YICFFCGTGFETRGSLDKHIDK 249
                 89*****************976 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 7
                 TTTEEE CS
     zf-C2H2   5 dCgksF 10 
                 +C++ F
  KKY19220.1 263 HCDWEF 268
                 799988 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 3.2
                 EEET.TT CS
     zf-C2H2   1 ykCp.dC 6  
                 y+C+ +C
  KKY19220.1 298 YRCEfGC 304
                 89*9888 PP

>> V-SNARE_C  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00014      0.36      33      58 ..      30      55 ..      29      55 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
   V-SNARE_C 33 sQretLkrarsklhnvanrlgksnsi 58
                 Qre L  +++++ ++a++l ksn i
  KKY19220.1 30 GQREELDAIKRRIEELAAALSKSNAI 55
                6**********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       906  (0.0505327); expected 358.6 (0.02)
Passed bias filter:                      707  (0.0394333); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 2021.26
//
Query:       KKY19221.1  [L=686]
Description: putative glycyl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-21   75.7   0.0    2.4e-21   75.7   0.0    3.3  4  HGTP_anticodon  Anticodon binding domain
    2.5e-08   34.1   0.1    8.2e-08   32.4   0.0    1.8  2  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P


Domain annotation for each model (and alignments):
>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       1.9   1.7e+04      16      41 ..       5      30 ..       4      31 .. 0.83
   2 ?   -0.7   0.4      0.18   1.7e+03      29      50 ..     156     178 ..     140     196 .. 0.60
   3 ?   -2.3   0.3      0.55     5e+03      60      73 ..     503     516 ..     453     524 .. 0.53
   4 !   75.7   0.0   2.7e-25   2.4e-21       1      92 [.     571     661 ..     571     663 .. 0.97

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1.9
                    HHHHHHHHHHHTTTSEEEEESSSSTH CS
  HGTP_anticodon 16 eyakklaeeLraagirvelddsnesi 41
                    e+++k  e+  ++ +r+ + +sn ++
      KKY19221.1  5 EFCRKFVEQVTHNHLRALFLKSNTTM 30
                    67899999999999999998888775 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.18
                     TSEEEEES.SSSTHHHHHHHHHH CS
  HGTP_anticodon  29 girveldd.snesigkkireadl 50 
                     g  ve+d+ ++ + +kk+++++ 
      KKY19221.1 156 GQTVEVDEaKEAKKKKKVKDTKA 178
                     33455555555555555555444 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.55
                     -HHHHHHTEEEEEE CS
  HGTP_anticodon  60 Gekelekgtvtvrd 73 
                     G+ elek+ +++++
      KKY19221.1 503 GKVELEKDLIKIEK 516
                     33344555555555 PP

  == domain 4  score: 75.7 bits;  conditional E-value: 2.7e-25
                     SEEEEESSSSHHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHHHHH CS
  HGTP_anticodon   1 qvvviplnekaeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelveklk 92 
                     +v+++pl++ a +++++++kl ++Lr+  i  ++dds+ sigk++++ d+lg+pf v+v++++l++g+vt+rdrdt+ q+r s de+v++lk
      KKY19221.1 571 KVLLVPLSN-APQFKPLVQKLTARLRRLAIANKIDDSSASIGKRYSRNDELGTPFGVTVDFQTLKDGSVTLRDRDTTTQVRASEDEIVAALK 661
                     7999****9.999**************************************************************************99886 PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   9.2e-12   8.2e-08      12      76 ..     246     311 ..     241     341 .. 0.83
   2 ?   -3.0   0.0      0.68   6.1e+03     152     177 ..     521     546 ..     513     547 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 9.2e-12
                   EE-SSSHHHHHHHHHHHEE..EBGGSSEEEEEEEEEEBTTTSTBCTTTB-SEEEEEEEEEEESGGGH CS
                   xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b  12 iLkPtneetfvelirdevl..rskrLPlklyqiqtkyRdEksdsrGLlRvreFhqkdgyvfhaeasl 76 
                   +L+P+  ++    +++  l  +++ +P+  + i+  +R+E s  +GLlRvreF + + + f+ ++s 
    KKY19221.1 246 YLRPETAQGQFLNFQKL-LefNQQSMPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHFVDPESG 311
                   89999999999999977.5689999****************9555*****************95432 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.68
                   TTSSEEEEEEEEEEEEHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 152 ennreksvimicaaigveRllsaile 177
                   e+ re ++ +i  ++g+ R+l  ++e
    KKY19221.1 521 EHIREYTPNVIEPSFGIGRILYSMIE 546
                   56688899999999******988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 4492.82
//
Query:       KKY19222.1  [L=425]
Description: putative rna processing factor 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-26   92.4   0.1    5.5e-26   91.9   0.1    1.2  1  Brix         Brix domain
  ------ inclusion threshold ------
       0.03   14.8   1.0      0.076   13.5   1.0    1.7  1  GOLD_2       Golgi-dynamics membrane-trafficking
       0.57    8.2  11.9       0.86    7.6  11.9    1.2  1  DNA_pol_phi  DNA polymerase phi
        1.8    8.2   5.2       0.21   11.2   0.9    1.6  2  FAM220       FAM220 family


Domain annotation for each model (and alignments):
>> Brix  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.1   1.2e-29   5.5e-26       4     193 .]     206     397 ..     203     397 .. 0.82

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 1.2e-29
                 --HHHHHHHHHHHHHCTTSEEEEEE...ECT-TTT..HHHHHHH...-HHHHHHHH..HCTCSEEEEEE..SSTTEEEEEEEEECECTGGGSTTTSTS- CS
        Brix   4 tssrlrqllkdlrslmkphtasflk...rnsnklk..dlvelag...vthlellse..kndcslfvfelskkrPngptlefkvenyslmkdlkkakkte 92 
                 ++s l+  +k l++l+ ph+++ ++   r  +k+   +++ +a    +t++++l e  k++ +l v++l    P+gpt++f+++n++  k+++++ ++ 
  KKY19222.1 206 INSTLHAQAKQLTQLF-PHSVYIRRsahRYGYKFSvrEISGFATnrnYTSVLVLEEdqKRPSGLTVIHL----PEGPTFHFSISNWVDGKKMPGH-GNP 298
                 567788889*******.*****8888655447887666666666779**********9***********....**********************.666 PP

                 TT---EEEEES.HHH.....HHHHHHHHHHH..SEEEG..-B-GG-SEEEEEEES.CCTTTECEEEE.E.EEEEEE..STTTTECT............T CS
        Brix  93 fgsrPllvfngkenf.....kllksllqdlFrvpkislkspklsglrrvvlftaaenqetdktisfR.h.Yaiklkksgkklpnleke..........k 174
                   + P l++n   nf      l+ +l+  lF  p+    +p++ ++r+vv+++   nq+ d +i++R h Y ++ k++ +k      +          +
  KKY19222.1 299 TDHIPELILN---NFrtplgLLTAHLFRTLF--PA----QPQI-QGRQVVTLH---NQR-D-YIFLRrHrYIFREKRETEKSV----TntegeavkgvE 378
                 69********...99999999**********..73....4678.*********...889.6.799886689998544433333....023345665544 PP

                 ..EEEEEEESEEEEEEEEE CS
        Brix 175 kerveLeEiGPrfdLklrk 193
                 + r  L+E+GPrf+Lklr+
  KKY19222.1 379 DIRAGLQELGPRFTLKLRR 397
                 999**************97 PP

>> GOLD_2  Golgi-dynamics membrane-trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   1.7e-05     0.076      20      79 ..      71     132 ..      60     163 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.7e-05
      GOLD_2  20 lfwefatdeydiGfGvyfewteatskavsvkvsesddeedeeeeee..eekveeedvekgsv 79 
                  +w+ at++ d G+G++ + ++ + + +  + + s++ ++ ee +e  e ++++ed ++ s+
  KKY19222.1  71 RVWDEATEDIDTGLGLSVDVERIKRQRLEEERTLSENADEAEEVDEtfEDEGDNEDDDADSM 132
                 58*******************99999988776666555555544442344555555444444 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  11.9   0.00019      0.86     628     680 ..      95     147 ..      81     174 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00019
  DNA_pol_phi 628 renkegqaelfedededeeddeeeeeeddeededseedddeeesdedeededd 680
                  r+ +e+++ l e++de ee de  e+e d+ed+d ++  d+ +++e+e++ ++
   KKY19222.1  95 RQRLEEERTLSENADEAEEVDETFEDEGDNEDDDADSMLDDTSDEENESETEE 147
                  55678888899889998888888888877777776633333222222222222 PP

>> FAM220  FAM220 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2         1   4.7e+03      75      75 ..      32      32 ..       5      81 .. 0.46
   2 ?   11.2   0.9   4.7e-05      0.21      20     113 ..     122     220 ..     102     234 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1
      FAM220 75 a 75
                a
  KKY19222.1 32 A 32
                1 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 4.7e-05
      FAM220  20 e....Dlsqdslklttklkkrsqkesvspsdap.swtaqsvldsnkrsrakeakslekksalskasllkhskkkvlPplkessrrssasasssskavsl 113
                 +    D+ ++ l  t   +++s+ e+++p+++p  ++++ +++s  +s+++ + sl ++   +k  +l   + +  P++ +++  +s+  ++ ++  +l
  KKY19222.1 122 GdnedDDADSMLDDTSDEENESETEEGMPFKKPpLPVKVARAASPTQSTTSTNLSLAPEALAAKFPTLFNTESSQVPKILITTSINSTLHAQAKQLTQL 220
                 233424444557777778889999*********889************************999888888888888999999999999999998876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1242  (0.0692732); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 2743.11
//
Query:       KKY19223.1  [L=118]
Description: putative fkbp peptidyl-prolyl cis-trans isomerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-26   91.2   0.0    4.4e-26   91.0   0.0    1.1  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.0   2.4e-30   4.4e-26       4      93 ..      16     110 ..      13     111 .. 0.93

  Alignments for each domain:
  == domain 1  score: 91.0 bits;  conditional E-value: 2.4e-30
                 BB-TTCEEEEEEEEEETT.......SSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEE CS
      FKBP_C   4 eakegdtVtvhykgkled.......gkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveL 93 
                 ++++gdtVt++y+g+led       gk fdss     +++  +G g+vikG++e+++ m +Gek+ lti+ ++aYg++g  +g ippnatL+F+v+L
  KKY19223.1  16 KPRQGDTVTMEYTGWLEDasapnnrGKQFDSS-VGRGDFKTPIGVGRVIKGWDEGVTDMTLGEKAVLTITGDYAYGSRGF-PGLIPPNATLIFQVQL 110
                 4899************766777788*******.68889******************************************.889************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       177  (0.00987227); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.53
# Mc/sec: 671.71
//
Query:       KKY19224.1  [L=690]
Description: putative impb mucb samb family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-42  143.5   0.0    7.6e-42  142.8   0.0    1.3  1  IMS       impB/mucB/samB family
    1.8e-14   53.0   2.8    3.4e-14   52.1   2.8    1.5  1  zf_UBZ    Ubiquitin-Binding Zinc Finger
    2.5e-10   41.1   0.0    4.9e-10   40.1   0.0    1.4  1  IMS_C     impB/mucB/samB family C-terminal domain
     0.0025   18.0   0.0     0.0057   16.9   0.0    1.6  1  IMS_HHH   IMS family HHH motif


Domain annotation for each model (and alignments):
>> IMS  impB/mucB/samB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.8   0.0   1.7e-45   7.6e-42       1     149 [.      46     274 ..      46     275 .. 0.97

  Alignments for each domain:
  == domain 1  score: 142.8 bits;  conditional E-value: 1.7e-45
                 EEETTHHHHHHHHHT.T-.TTS-EEEEET....TEEEEE-HHHHTTT--TTSBHHHHHTTHTT-EEE.........................EEE-HHH CS
         IMS   1 iDmdaFyasverardpeL.kgkPvvvaqgsekrgiviavsyeArayGvkrgmrikeakklcpdlivv.........................kvdleky 73 
                 iD+daFya++e++r     +++P++v+q+    + +ia++y+Ara+G +r+ +++eakk+cp+liv                          kv+l++y
  KKY19224.1  46 IDLDAFYAQCEMVRL-AVsEDQPLAVQQW----QGLIAINYAARAHGLSRHVTVQEAKKVCPELIVQhvatwregddrwayredawkhittdKVSLDPY 139
                 8*************9.566**********....9******************************99999****************************** PP

                 HHHHHHHHHHHHHH-S......EEEEETTEEEEE-HHHHHHHH-S...................................................... CS
         IMS  74 rraskkileilkrfispk....vekasiDEayldltgleelaese...................................................... 114
                 r  s+kil+++k+  +p+    vekasiDE++ldl+++++    e                                                      
  KKY19224.1 140 RLQSRKILDLIKTTLPPQplqkVEKASIDEVFLDLSAHIHSILLErypelhgpppyddptenlpmppttvldwqadalvdldvdetedddpdwddivml 238
                 **************99766777***************88888888899*************************************************** PP

                 .HHHHHHHHHHHHHHHH---EEEEEESSHHHHHHHH CS
         IMS 115 .gaalakelrkaikeelgltvsiGiasnkllAKlas 149
                  g+++++ +rkai ++l++t+s+Gia+nk+lAKl s
  KKY19224.1 239 iGSEIVRDVRKAIRDQLKYTCSAGIAKNKFLAKLGS 274
                 *********************************987 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   2.8   7.7e-18   3.4e-14       2      32 .]     613     643 ..     612     643 .. 0.96

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 7.7e-18
      zf_UBZ   2 tylCerCgkeipeselqEHeDwHfAkdLqee 32 
                 +y+C+ C+++ipe e++EH+DwHfAkdLq+e
  KKY19224.1 613 SYFCDACQRSIPEIEREEHQDWHFAKDLQAE 643
                 8****************************97 PP

>> IMS_C  impB/mucB/samB family C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   1.1e-13   4.9e-10       2     110 ..     357     473 ..     356     478 .. 0.88

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 1.1e-13
       IMS_C   2 vearpepksissektfpepyd.esklkkelreLaeelarrLrdkg.....lvartitlklrysdfhasrsatLpr.ptsdtreileaalkLlrrlide. 92 
                 v+ r + ks+ s k+f + ++ ++++  +lr +++++ +rL+++g     + ++t+ l+ r    ++sr+ ++p+    d++ ++++ + Ll ++i e 
  KKY19224.1 357 VNSRTQIKSMLSAKSFRPSINtPEQAVRWLRIFVADIFARLVEEGvlenkRRPKTLNLHHRQGGTTKSRQIPIPQgKKIDETVLFDLSKTLLGQVIGEg 455
                 6779999***********55548789***************88886666669********966666*********666********************* PP

       IMS_C  93 pglpirligvsasnlvek 110
                 + +p+ ++++s++++++ 
  KKY19224.1 456 RAWPCANLSLSVGGFEDG 473
                 ***************954 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.3e-06    0.0057       3      31 ..     289     318 ..     287     319 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.3e-06
     IMS_HHH   3 dvkefLwplpitkipGiGgklgek.LeklG 31 
                 ++++fL+++++tki+ +Ggklg++   ++G
  KKY19224.1 289 AIQQFLSEFKFTKIRNLGGKLGDQvVSTFG 318
                 799*******************99666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.37s 00:00:01.08 Elapsed: 00:00:00.55
# Mc/sec: 3807.07
//
Query:       KKY19225.1  [L=431]
Description: putative isovaleryldehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-41  140.5   1.8    7.6e-41  139.8   1.8    1.3  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    1.9e-31  109.1   0.0      4e-31  108.0   0.0    1.6  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    6.7e-27   93.5   0.1    1.2e-26   92.8   0.1    1.4  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    2.2e-13   50.6   0.2    3.6e-13   49.9   0.2    1.4  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
    4.2e-05   23.4   0.1    0.00013   21.7   0.1    1.7  1  HpaB_N         4-hydroxyphenylacetate 3-hydroxylase N termina


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.8   1.8   2.1e-44   7.6e-41       1     148 [.     273     421 ..     273     422 .. 0.97

  Alignments for each domain:
  == domain 1  score: 139.8 bits;  conditional E-value: 2.1e-44
                    TBHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------.HHHHHHHHHHH CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheRlavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpd.raeasmaKlfa 95 
                    +kG++v me+l+ eRl++ a+ lg+++++l+ +l y ++rk+fg p++ +qlv+ kla+m+++l+aar+++y++a+a+d++++  +++++ a l+a
     KKY19225.1 273 NKGVTVLMEGLDLERLVLSAGPLGIMQACLDLVLPYTHQRKQFGIPIGHNQLVQGKLADMYTKLQAARAYTYATAKAVDEEAQIrTQDCAGAILYA 368
                    79*******************************************************************************9996677777***** PP

                    HHHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHHHHH CS
  Acyl-CoA_dh_1  96 selaqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrniiarr 148
                    +e a+e+  +a+ql+Gg+Gy +e +  rl+rda++++ig+Gtsei r++i+r+
     KKY19225.1 369 AERATECGLDAIQLMGGNGYVNEIAAGRLLRDAKLYEIGAGTSEIRRMVIGRA 421
                    **************************************************997 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.0   1.1e-34     4e-31       5     113 .]      53     162 ..      49     162 .. 0.94

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 1.1e-34
                    HHHHHHHHHHHHHHT.HHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHHHS-H CS
  Acyl-CoA_dh_N   5 ealrdtvrefaeeel.aphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslvapailrfGte 99 
                     +lr+ v++fa++e+ +++aa  d+++efp ++wkkl+ +G+lgit  e+ygG+g++y +++i++eel+ra+a++al++++hs+l+++ +   G++
     KKY19225.1  53 YDLRENVQDFARREIpEEVAASTDRQNEFPMDMWKKLGGAGFLGITADEDYGGLGMGYQAHCIILEELSRASASIALSYAAHSQLCVNQLCLNGSQ 148
                    579************556777778888********************************************************************* PP

                    HHHHHHHHHHHTTS CS
  Acyl-CoA_dh_N 100 eqkrryLpklasge 113
                    eqk+r Lp l+sg+
     KKY19225.1 149 EQKERILPGLISGD 162
                    ************96 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.1   3.2e-30   1.2e-26       1      97 []     166     261 ..     166     261 .. 0.91

  Alignments for each domain:
  == domain 1  score: 92.8 bits;  conditional E-value: 3.2e-30
                    EEE---SS-SS-GGG---EEEEETT.EEEEEEEEEEEETTTT-SEEEEEEETS-------EEEEEEE..GGGEEE-----BSS-TTS-EEEEEEE. CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvkttaaerdggeyvlnGeKiwitnaaiatlalvlartekpdrarglslflvprdapgvsvrrieeklGlrglptgelvfed 96 
                    a+a++E +aGsdv s+kt +a+  +g+yvlnG+K+witn+++a++++v+a+te  ++++g++ f+v+++ +g+s  r+ +klG+rg +tgel fed
     KKY19225.1 166 ALAMSEHSAGSDVVSMKT-TAKAVDGGYVLNGTKMWITNGPDANYIIVYAKTEPGKASKGITAFIVEKGYEGFSCARKLDKLGMRGSNTGELIFED 260
                    79****************.55555569************************444446******************9999****************9 PP

                    . CS
  Acyl-CoA_dh_M  97 v 97 
                    v
     KKY19225.1 261 V 261
                    7 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.2     1e-16   3.6e-13       2     126 ..     289     404 ..     288     412 .. 0.93

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 1e-16
                    HHHHHHHHHHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   2 giaavalGaAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaa 97 
                    +++a  lG+ +a+l+ ++ ++++r++  +g ++  ++ +q +la++ ++l+AAra ++++a++    +++++++    +++ + a ++a+e+a+++
     KKY19225.1 289 VLSAGPLGIMQACLDLVLPYTHQRKQ--FGIPIGHNQLVQGKLADMYTKLQAARAYTYATAKA----VDEEAQI---RTQDCAGAILYAAERATEC 375
                    677888********************..***********************************....9999999...6667778899********* PP

                    HHHHHHHCGGGGGBTT-HHHHHHHHHHHH CS
  Acyl-CoA_dh_2  98 vdalfeaaGgsalrkesplqRlwRDahaa 126
                      ++++++Gg+++ +e    Rl+RDa+  
     KKY19225.1 376 GLDAIQLMGGNGYVNEIAAGRLLRDAKLY 404
                    **************************975 PP

>> HpaB_N  4-hydroxyphenylacetate 3-hydroxylase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   3.7e-08   0.00013     175     271 ..     188     269 ..     168     269 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 3.7e-08
                 -SSEEEEEEEEEEEE-.--SSEEEE---SS-..TTSGGG-EEEEEETT-TTEEEEE-------S..-TTT-TTTTT----EEEEEEEEEEEEGGGEE CS
      HpaB_N 175 tddGivVrGakvlaTgaaladeilvlptramlkeedkdyavafavpvdapGlklicresfedkleesefdyplssrfdendalvvfDdVfVPwerVf 271
                  d G v +G+k+ +T+++ a++i+v+   ++   + ++   af+v+   +G +  c ++ ++         ++    + n+  ++f+dVfVP e+++
  KKY19225.1 188 VDGGYVLNGTKMWITNGPDANYIIVYAKTEP--GKASKGITAFIVEKGYEGFS--CARKLDK--------LGMR---GSNTGELIFEDVFVPKENIL 269
                 356899********************99777..46888999**********65..7777776........2233...678889************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.54
# Mc/sec: 2402.86
//
Query:       KKY19226.1  [L=496]
Description: putative 3-methylcrotonylbeta subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.1e-141  472.8   0.0   1.3e-141  472.6   0.0    1.0  1  Carboxyl_trans  Carboxyl transferase domain


Domain annotation for each model (and alignments):
>> Carboxyl_trans  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  472.6   0.0  7.4e-146  1.3e-141       2     484 ..      23     483 ..      22     494 .. 0.93

  Alignments for each domain:
  == domain 1  score: 472.6 bits;  conditional E-value: 7.4e-146
                     SCTTCEEEEEEEEHTTSGGGE.BEHHHHHHHHHHHHHHHHHT..EEEEEEEESBETTEEHHHHTTEEEEESSTTSGGGCEEECHHHHHHHHHTEE CS
  Carboxyl_trans   2 ehprGkltareridllldpgs.FgeledlffhrvtelgrkkklprdgvvtgsGaviGravevvaqdktvlggslgpakgekllkaqeeaikagep 95 
                     + +rGk++ar+ri  l+dpgs F+el+ l+ h ++ +     +p+ +++tg+G v+G+++++va+d+tv+gg+++p++++k+l+aqe+a ++++p
      KKY19226.1  23 HIQRGKMLARDRITALIDPGSsFLELSPLAGHDMYGED----VPAGSIITGIGSVEGVTCMIVANDSTVKGGTYYPVTVKKHLRAQEIARENQLP 113
                     679*****************************999888....8**************************************************** PP

                     EEEEEEE-ESSS.GHHSSHHHHHHHHHHHHHHHHHHH.CS-EEEEESSEEETHHHHHHHHTSEEEEETTEEEEESSTHHHHHHHHSSCC-SSCHH CS
  Carboxyl_trans  96 ligindsgGaeg.riqegveslrgsGkifgenskasg.eIpqislvtgrcaGggaYlpalgdrvimveetskifltGpdvikkvlgreevtseel 188
                     +i+++dsgGa++ r+++++++++++G+if++++++s+ +Ipqis+v+g+c++ggaY+pa++d+ i ve +++ifl+Gp+++k+++g e+v++e+l
      KKY19226.1 114 CIYLVDSGGANLpRQADVFPDREHFGRIFFNQARMSSmGIPQISVVMGPCTAGGAYVPAMSDESIIVEHQGTIFLAGPPLVKAATG-EVVSAEDL 207
                     **********777*************************************************************************.******** PP

                     HHSHHHHTTTTSSSEEESSHHHHHHHHHHHHTTS-SSTTSGGSS----ECSSGSSSH..HCS-CTTTS---HHHHHHCEECTTC-EEESTTSSTT CS
  Carboxyl_trans 189 gGatqhmtksGvahltaeddeealelirkllsylPkkasnnresaPivetadepdrdlieivPdnakkpyDvreviarlvdegeFlEikegyAkt 283
                     gG++ h t+sGv++++a +d +al l r+ +s l+ ++ + +e+  + +   +pd  l  iv +n +k+  ++eviar+vd +eF+E+k +y++t
      KKY19226.1 208 GGGQLHSTISGVTDYLAVNDAHALVLARRSISNLNYPRTSPPETLIKEPL-YSPDD-LTGIVGTNLRKQIPIHEVIARIVDGSEFSEFKRDYGTT 300
                     ***********************************777774444333333.33333.68************************************ PP

                     EEEEEEEETTEEEEEEEE--SEEETTEE-HHHHHHHHHHHHHHHHTT--EEEEE-BSEE--SHHHHHTTHHHHHHHHHHHHHT--S-EEEEE-TE CS
  Carboxyl_trans 284 vVvGfArlgGipvGvvAnetrveaGqvlfidsavKaarfirlcdaenlPlviladvrGflvGqrqeyggilkhGaklvdalaeakvPkitvilrk 378
                     +++GfAr++G  vG++An+     G +lf++s++K a+fi+lc+++++Plv+l+++ Gf+vG+++e+ggi+k Gaklv+a+a+a+vPk+tv++++
      KKY19226.1 301 LITGFARIYGHQVGIIANN-----G-ILFSESSLKGAHFIELCCQRHIPLVFLQNISGFMVGADAEKGGIAKNGAKLVTAVACANVPKFTVVIGA 389
                     *******************.....8.********************************************************************* PP

                     EEHHHHHTTTGGGSTTTTEEETTT-EEESS-HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHTTS CS
  Carboxyl_trans 379 ayGGayvvmdskingadlvaawptariaVlgpegaveilfrkekaaaemerkdlaaerkkklkeyeeellnpyvaaargfaDavidpsetraklv 473
                     ++G+++++m++++++++++ +wp+a+i+V+gpe++ +++ +  k  +             +l+++ e  +     +ar ++D vi+p++tr++l 
      KKY19226.1 390 SSGAGNYGMCGRAYSPRFLWMWPNAKIGVMGPEQLTAVMSTVGKTVDP------------ELRDRIERESDALFSSARLWDDGVIEPASTRRVLG 472
                     *******************************************98887............2333333335678999******************9 PP

                     SSEEEHGGGHH CS
  Carboxyl_trans 474 ialelewkkar 484
                       l++++  + 
      KKY19226.1 473 LGLQAAVGGRT 483
                     99998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 3041.38
//
Query:       KKY19227.1  [L=189]
Description: putative ras small monomeric gtpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-32  112.3   0.0    2.2e-32  111.9   0.0    1.1  1  Ras          Ras family
    4.3e-08   33.4   0.0    7.1e-08   32.7   0.0    1.3  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    0.00037   20.0   0.0    0.00045   19.7   0.0    1.2  1  Arf          ADP-ribosylation factor family
     0.0014   18.2   0.0     0.0017   17.9   0.0    1.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.17   11.8   0.0    1.2  1  RsgA_GTPase  RsgA GTPase


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.0   6.1e-36   2.2e-32      53     161 ..      33     143 ..      26     144 .. 0.98

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 6.1e-36
                 EEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST.TTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTH CS
         Ras  53 wDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvae.envpivLvGnKvDleekravsteegeelakelg.lkfletSAktnenv 149
                 +DTAG e+f+++rely+++++g+llv++its++s+++++++ ++i r+++ envpiv+vGnK+Dle++ravs++++ ++++++g ++++etSA+ + nv
  KKY19227.1  33 LDTAGTEQFTAMRELYMKQGQGFLLVFSITSSSSLHELQELRDQIVRIKDdENVPIVIVGNKSDLEDDRAVSRARAFQISQQWGnAPYYETSARRRANV 131
                 6************************************************9999******************************99************** PP

                 HHHHHHHHHHHH CS
         Ras 150 eeafeellreil 161
                 +e+f +l r+i 
  KKY19227.1 132 DEVFVDLCRQII 143
                 *********986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0     2e-11   7.1e-08      62     119 ..      34      96 ..      25      97 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 2e-11
                 EE-SGGCTTTT-HHHHCTSCEEEEEEEGHHH...HCHHHHHHHHHHHCS..SS-EEEEEE-TT CS
         Roc  62 DtaGqerfrslhplylreaalailvydsrss...enlkeWlkelkkvag..kspvilvgnkiD 119
                 DtaG e+f ++++ly+++ + ++lv+  +ss   ++l+e  +++ +  +  + p+++vgnk D
  KKY19227.1  34 DTAGTEQFTAMRELYMKQGQGFLLVFSITSSsslHELQELRDQIVRIKDdeNVPIVIVGNKSD 96 
                 9*************************96665112456777778877765225699******99 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.2e-07   0.00045      64     139 ..      34     109 ..      20     142 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.2e-07
                 EE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHH CS
         Arf  64 DvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrel 139
                 D  G e+   + + Y+++ ++ + v   + ++ l+e +e  +++++ ++ ++v++++++NK Dl+++   +  r+ 
  KKY19227.1  34 DTAGTEQFTAMRELYMKQGQGFLLVFSITSSSSLHELQELRDQIVRIKDDENVPIVIVGNKSDLEDDRAVSRARAF 109
                 77788899999999*******999999999999***999999**********************998777666554 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.8e-07    0.0017      74     144 ..      32     107 ..      10     153 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4.8e-07
                 EEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.....STHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHH CS
    GTP_EFTU  74 liDtPGHvdFskevirglrvlDgavlvvdaveG.....vepqteevlrlalkegvpiivfiNKmDrlkaelkeive 144
                  +Dt G ++F+   +  +++  g +lv+++++       ++   +++r+  +e+vpi+++ NK D  +++    ++
  KKY19227.1  32 RLDTAGTEQFTAMRELYMKQGQGFLLVFSITSSsslheLQELRDQIVRIKDDENVPIVIVGNKSDLEDDRAVSRAR 107
                 58*****************************6655655999999*********************98655544444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.8e-05      0.17      21      97 ..      57     138 ..      49     143 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.8e-05
                  EEEESTTTT..--HHHHHHHHHHH.HHTT-EEEEEEE-GGG--HHH.HHHHHHHHHHHTT.SEEEE--TTTHTTHHHHHHHC CS
  RsgA_GTPase  21 ivvslkepe..lslnlldrfLvla.eekgiepvivlnKiDlleeee.eleelkeelealg.yevllvsaktkegleelkell 97 
                  +v+s+++ +   +l+ l   +v +  ++++++viv nK Dl +++  +  +  +  +++g  + + +sa+++++++e+   l
   KKY19227.1  57 LVFSITSSSslHELQELRDQIVRIkDDENVPIVIVGNKSDLEDDRAvSRARAFQISQQWGnAPYYETSARRRANVDEVFVDL 138
                  666665433112444454455554157899**************99655555667778873566788999999998876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.35s 00:00:00.92 Elapsed: 00:00:00.54
# Mc/sec: 1050.50
//
Query:       KKY19228.1  [L=718]
Description: putative 3-methylcrotonylcarboxylase subunit alpha [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-72  242.6   0.0    4.3e-72  242.0   0.0    1.2  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    8.2e-37  126.1   0.0    1.9e-36  124.9   0.0    1.7  1  Biotin_carb_N    Biotin carboxylase, N-terminal domain
    1.4e-35  121.7   0.0    3.3e-35  120.4   0.0    1.7  1  Biotin_carb_C    Biotin carboxylase C-terminal domain
    3.7e-16   58.7   0.3    8.3e-16   57.6   0.3    1.7  1  Biotin_lipoyl    Biotin-requiring enzyme
    1.1e-11   44.7   0.1    2.9e-11   43.3   0.0    1.8  2  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    1.4e-08   34.5   0.0      3e-08   33.4   0.0    1.5  1  ATP-grasp        ATP-grasp domain
    5.7e-05   23.2   0.0    0.00022   21.3   0.0    2.0  2  ATP-grasp_3      ATP-grasp domain
    0.00021   21.1   0.0    0.00038   20.3   0.0    1.4  1  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr
    0.00073   20.2   0.1        2.4    8.9   0.0    2.7  2  HlyD_3           HlyD family secretion protein
     0.0095   15.7   0.4      0.079   12.8   0.2    2.2  2  Biotin_lipoyl_2  Biotin-lipoyl like
  ------ inclusion threshold ------
       0.04   13.5   0.0      0.084   12.5   0.0    1.5  1  ATP-grasp_4      ATP-grasp domain
       0.05   12.8   0.0      0.086   12.1   0.0    1.3  1  ATPgrasp_ST      Sugar-transfer associated ATP-grasp
      0.063   12.6   0.0       0.11   11.8   0.0    1.3  1  Capsid_VP7       Outer capsid protein VP7
       0.14   11.4   0.1        5.4    6.2   0.0    2.6  3  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
       0.15   12.1   0.1        1.5    8.8   0.1    2.3  2  RnfC_N           RnfC Barrel sandwich hybrid domain
       0.16   11.8   0.0       0.37   10.7   0.0    1.5  1  GCV_H            Glycine cleavage H-protein


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.0   0.0   3.9e-75   4.3e-72       1     209 [.     150     358 ..     150     360 .. 0.99

  Alignments for each domain:
  == domain 1  score: 242.0 bits;  conditional E-value: 3.9e-75
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  Dk ++k+++ +++vp+vp+ +++ ++ e   + a++igyPv+ika  g+GGkGmr++++  e++e +++a +e+k +f+n++vl+ek+++ p++iEv+
   KKY19228.1 150 DKAKSKTIMTNAGVPCVPGYHGQDQNPELLANEAEKIGYPVLIKAVRGGGGKGMRIVQSATEFNEKLRSAKSESKNSFANDEVLIEKYITTPRHIEVQ 247
                  999*******************9999999999****************************************************************** PP

                  EEEETTS-EEEEEEEEECCECTCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--HH CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslqlrtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlv 196
                  v +D+ g ++ ++er++s+q+r+qk++e+ P++ L+d+ r+ + e+a +++ +vg++gagtvef++d++++e++++E+NtRl+ve++++e++TG dlv
   KKY19228.1 248 VFADKLGHCVALGERDCSIQRRHQKILEESPAPNLDDSIRKDIWEKARAAALAVGYEGAGTVEFIFDNDTGEFFFMEMNTRLQVEHPVSEMVTGQDLV 345
                  ************************************************************************************************** PP

                  HHHHHHHTT--GC CS
  CPSase_L_D2 197 keaakialgekLe 209
                  ++++ +a g++L+
   KKY19228.1 346 HWQILVAEGKPLP 358
                  ***********97 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.9   0.0   1.7e-39   1.9e-36       3     110 .]      41     145 ..      39     145 .. 0.97

  Alignments for each domain:
  == domain 1  score: 124.9 bits;  conditional E-value: 1.7e-39
                    -EEEE---HHHHHHHHHHHHHTT-EEEEEEEGGGTTSHHHHHSSEEEEEESSTTCCGGG-HHHHHHHHHHTT-SEEE--SSTTTT-HHHHHHHHHT CS
  Biotin_carb_N   3 kkvlianrGeiAvriiravrelgietvavyseedanslhvreadeavelgpasasesYlniekivkaakesgadavhpGyGflsEnaefaeaveea 98 
                    +++lianrGeiA+r+ r++ + gi+t+++y+++da+s+h+  +  a++lg   ++ +Yl++ ki+++a++++++a+hpGyGflsEna+fa++++++
     KKY19228.1  41 DSILIANRGEIALRVSRTAAKHGIRTTTLYTNPDATSQHALSSPFAFNLG---ETGAYLDATKIIEIARKEHCQAIHPGYGFLSENAAFAQQCTDN 133
                    78***********************************************9...7789*************************************** PP

                    T-EESSS-HHHH CS
  Biotin_carb_N  99 givfiGPsaeal 110
                    givfiGP+++a+
     KKY19228.1 134 GIVFIGPPWKAI 145
                    ********9986 PP

>> Biotin_carb_C  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4   0.0     3e-38   3.3e-35       1     107 [.     376     483 ..     376     484 .. 0.98

  Alignments for each domain:
  == domain 1  score: 120.4 bits;  conditional E-value: 3e-38
                    EEEEESEETTTTTEE--CE-SEEE--.-STTEEEEE---TT-EE-TTS-SEEEEEEEEESSHHHHHHHHHHHHHT-EEESS-BSHHHHHHHHH-HH CS
  Biotin_carb_C   1 eaRinaEdpeknflpssGkvtelelp.egpgvRvdsgveegsevspyyDsllaKlivhgetreealarlrraLaelrieGvktnieflrailedee 95 
                    eaRi+aE+p k+f p+sG +t+++lp e  +vR+dsg+ eg+evs++yD++++Kliv+g +r+ea+++l+ aL++++i+G  tniefl++i+++e+
     KKY19228.1 376 EARIYAENPIKGFVPDSGLLTHVKLPrETSDVRIDSGFIEGDEVSAHYDPMISKLIVRGYNRREAVRNLAMALEDYEIAGPVTNIEFLKRICRSED 471
                    89************************8899****************************************************************** PP

                    HHHT---TTTCC CS
  Biotin_carb_C  96 fakgeldtkfle 107
                    fa+g+++t+++e
     KKY19228.1 472 FANGDVETGYIE 483
                    ***********9 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.3   7.4e-19   8.3e-16       3      72 ..     650     714 ..     648     715 .. 0.95

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 7.4e-19
                    EEESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl   3 iksPmiGesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllak 72 
                    + +Pm+ ++ +     v v++Gd+V+++q+l+++e+mKme+ i +p++G+vk i+++ G+  ++g+ l++
     KKY19228.1 650 VLAPMPCKVLR-----VDVQAGDAVQKDQPLVVIESMKMETVIRSPSDGIVKRIVHDAGEICSAGTALVE 714
                    66899999999.....**************************************************9987 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   2.6e-14   2.9e-11      21     174 ..     173     327 ..     157     328 .. 0.82
   2 ?   -3.6   0.0       5.9   6.7e+03     171     180 ..     517     526 ..     516     530 .. 0.87

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 2.6e-14
                      CH-H-HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT......-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-S CS
  Dala_Dala_lig_C  21 keekkellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafky......dekvlvEeai.egreievavlgneklevsevgeivvk 107
                       +++ ell+++ e++gypv++K++r G   G+  v+s+ e++e +++a +       + +vl+E++i   r iev v  +   ++  +ge+  +
       KKY19228.1 173 DQNP-ELLANEAEKIGYPVLIKAVRGGGGKGMRIVQSATEFNEKLRSAKSEsknsfaNDEVLIEKYItTPRHIEVQVFADKLGHCVALGERDCS 265
                      3444.8999*********************************999998764112222568*******899*********999999999998765 PP

                      SSSS-HHHHHC.TT-EEESS-.---HHHHHHHHHHHHHHHHHTT--SEEEEEEEE.ETTTEEEEEEEES CS
  Dala_Dala_lig_C 108 kgfydyeakysddkaqlevpa.klekeveekiqelalkaykaldlrGlaRvDffl.teegeivlnEvNt 174
                        + + ++k  +     e pa +l++++++ i e a  a  a++ +G + v f+  +++ge+++ E+Nt
       KKY19228.1 266 --IQRRHQKILE-----ESPApNLDDSIRKDIWEKARAAALAVGYEGAGTVEFIFdNDTGEFFFMEMNT 327
                      ..4566666653.....333327999999999999999999************996678*********9 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5.9
                      EEESS---ST CS
  Dala_Dala_lig_C 171 EvNtlPGfTe 180
                      EvNt  GfT+
       KKY19228.1 517 EVNTPRGFTS 526
                      9********8 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   2.7e-11     3e-08      18     159 ..     177     328 ..     158     330 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 2.7e-11
                 HHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE----SEEEEEEEEEETTC-EEE-...-EEEEEEETTEE CS
   ATP-grasp  18 eeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvpfekElsvlvvrsaeGetafy...pvvetvqedgil 105
                 e l + ae++g+pv++Ka + g  GkG  +v+s+ + ++ l+ +        ++ +v++E+++   + + v v  ++ G+ +++   +   + ++++il
  KKY19228.1 177 ELLANEAEKIGYPVLIKA-VRGGGGKGMRIVQSATEFNEKLRSAksesknsfANDEVLIEKYITTPRHIEVQVFADKLGHCVALgerDCSIQRRHQKIL 274
                 3677899**********5.55668************999999998999999999*************************97776222344556678899 PP

                 EEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEE.EEETTCTEEEEEEESS CS
   ATP-grasp 106 rlsvapaevsekaqkkaeeiakkiveeLggvGvfavEl.FvledgellvnElapR 159
                 ++s ap  +++++ k + e a+ ++ ++g+ G  +vE+ F  ++ge ++ E+  R
  KKY19228.1 275 EESPAPN-LDDSIRKDIWEKARAAALAVGYEGAGTVEFiFDNDTGEFFFMEMNTR 328
                 9999998.899**************************846667788999888777 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0     2e-07   0.00022       3     159 ..     150     330 ..     148     332 .. 0.79
   2 ?   -1.9   0.0       2.6     3e+03      61      77 ..     405     421 ..     353     424 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2e-07
                  SHHHHHHHHTTT.S--.-............-EESS--SSSEEEEESS-------B--SS--TTE...................EEEE---S.EEEEEE CS
  ATP-grasp_3   3 dKlktykkLkeagvkv.P........tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve............lvqefieG.kplSvs 78 
                  dK k+   + +agv++ P         +l a+e+e+  +++ +K ++G+gg+++r+v+   e ++++ + +            l+ ++i   +++ v+
   KKY19228.1 150 DKAKSKTIMTNAGVPCvPgyhgqdqnPELLANEAEKIGYPVLIKAVRGGGGKGMRIVQSATEFNEKLRSAKsesknsfandevLIEKYITTpRHIEVQ 247
                  8888888888888875358888776668889999999***********************999999999889999********9*****8648999*9 PP

                  EEE.SSSEEEEEEEEEE..EET....TEEEEEEES.----HHHHHHHHHHHHHTTSTT--EEEEEEEEESS...SEEEEEEESS-- CS
  ATP-grasp_3  79 llsdgekvlvlavnrql..iekaekefvyaGnvtp.ietelkeevvelaeevvekleglaGyvGvDlvlkd..eepyviEvNPRlt 159
                  + +d+   +++a+ +    i+++++  +   + +p  + + ++++ e a+ +  ++ g  G   v+++  +  +e  ++E N Rl+
   KKY19228.1 248 VFADK-LGHCVALGERDcsIQRRHQ-KILEESPAPnLDDSIRKDIWEKARAAALAV-GYEGAGTVEFIFDNdtGEFFFMEMNTRLQ 330
                  99977.5555555554401444333.44444444404445599999******9999.9***999****98878999********97 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.6
                  ....EEEE---SEEEEE CS
  ATP-grasp_3  61 eevelvqefieGkplSv 77 
                    v + + fieG+++S+
   KKY19228.1 405 SDVRIDSGFIEGDEVSA 421
                  44557888999999997 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   3.4e-07   0.00038       2      91 ..     150     240 ..     149     281 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.4e-07
                 BHHHHHHHHHHTT--B-.-EEEES.SHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---S CS
      GARS_A   2 sKsfakdllkkagipta.eyeaft.dpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleG 91 
                 +K+ +k+++++ag+p    y+  + +pe + +  e+ + ++  +Ka++  +gKg+ +++s++e  + +++  ++ k   a+++v+iE++++ 
  KKY19228.1 150 DKAKSKTIMTNAGVPCVpGYHGQDqNPELLANEAEKIGYPV-LIKAVRGGGGKGMRIVQSATEFNEKLRSAKSESKNSFANDEVLIEKYITT 240
                 78999**********87577766537888999999999999.**********************************************9864 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0028       3.2       2      31 ..     650     679 ..     649     683 .. 0.93
   2 !    8.9   0.0    0.0022       2.4       1      31 [.     686     716 ..     686     718 .] 0.93

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0028
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleii 31 
                 + Ap  ++v  ++v++g+ vq+ ++l+ i 
  KKY19228.1 650 VLAPMPCKVLRVDVQAGDAVQKDQPLVVIE 679
                 78************************9985 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0022
      HlyD_3   1 tlrApvdGvvvelnveegevvqagdelleii 31 
                 ++r+p dG+v+ + + +ge+ +ag++l+e  
  KKY19228.1 686 VIRSPSDGIVKRIVHDAGEICSAGTALVEFE 716
                 69*************************9876 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.2     7e-05     0.079       7      39 ..     652     684 ..     648     689 .. 0.86
   2 ?    0.9   0.0      0.36   4.1e+02       5      34 ..     687     716 ..     684     718 .] 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7e-05
  Biotin_lipoyl_2   7 apvsGrVaqlnVkdGqrVkaGdvLaelDsralq 39 
                      ap + +V ++ V+ G+ V++ + L++++s + +
       KKY19228.1 652 APMPCKVLRVDVQAGDAVQKDQPLVVIESMKME 684
                      677889*********************998766 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.36
  Biotin_lipoyl_2   5 IaapvsGrVaqlnVkdGqrVkaGdvLaelD 34 
                      I +p +G V+++    G    aG  L+e +
       KKY19228.1 687 IRSPSDGIVKRIVHDAGEICSAGTALVEFE 716
                      899*********999999999998888765 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.5e-05     0.084       1      77 [.     186     255 ..     186     263 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.5e-05
  ATP-grasp_4   1 islPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieG.eEfavdayfdeeGe 77 
                  i +Pv iK + g +  G++++++++e+++ +++ ++e    k+ +      ++++l+E+yi     + v ++ d+ G+
   KKY19228.1 186 IGYPVLIKAVRGGGGKGMRIVQSATEFNEKLRSAKSE---SKNSF-----ANDEVLIEKYITTpRHIEVQVFADKLGH 255
                  579**************************66666655...34444.....46788*****976245677777777776 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.7e-05     0.086      19     128 ..     148     239 ..     141     247 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.7e-05
  ATPgrasp_ST  19 vddKlkfkelalraglkvpkllgvikeqaeiseleafvkeleegvviKpakgsgGkGilviteredqdylkssgksalldelerhvsnilagLyslgg 116
                  + dK k k+++ +ag++    +   +++ e+ + ea  +++ + v+iK+++g gGkG++++++ ++ + + +s+ks + + +                
   KKY19228.1 148 MGDKAKSKTIMTNAGVPCVPGYHGQDQNPELLANEAEKIGY-P-VLIKAVRGGGGKGMRIVQSATEFNEKLRSAKSESKNSFA--------------- 228
                  789************99766688888887777777777778.6.9****************8877766666666666666666............... PP

  ATPgrasp_ST 117 kpdvalveelik 128
                   +d++l+e++i+
   KKY19228.1 229 -NDEVLIEKYIT 239
                  .66666666665 PP

>> Capsid_VP7  Outer capsid protein VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.5e-05      0.11      74     160 ..      32     122 ..      18     194 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.5e-05
  Capsid_VP7  74 drrelirsl..levsdkaaialvesrevdyreldvklvfvadeedelvaPakdiv.eldlrscdlddss.aelavrnlcqathdtvthlai 160
                   +++i+sl  ++++++ +ial+ sr+   + +     +  +++    a +   + +l      ld +   e+a +++cqa h ++  l+ 
  KKY19228.1  32 SDKNAIKSLdsILIANRGEIALRVSRTAAKHGIRTTTLYTNPDATSQHALSSPFAfNLGETGAYLDATKiIEIARKEHCQAIHPGYGFLSE 122
                 34678999877899**************************999999999866554155555666776542589999*******99998873 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       4.8   5.4e+03     160     204 ..     590     634 ..     584     636 .. 0.81
   2 ?    6.2   0.0    0.0048       5.4      24      56 ..     652     683 ..     643     686 .. 0.79
   3 ?    3.0   0.0     0.044        49     108     141 ..     684     717 ..     680     718 .] 0.87

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.8
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 160 kvgqkvevtvealpgktfeGkvdyiyptvdpetRtvkvRieldNp 204
                 + +q+ +  v+++p +++++++ + ++ +   +R  + R++++ p
  KKY19228.1 590 EYDQSTRRLVTYFPHTRLTSTMGFANDLITIFSRGKQYRLKIPAP 634
                 556777777899999999999999999999999999999988765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0048
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  24 arveGwveklyvnatgdkVkkGqpLaelyspel 56 
                 a +   v +++v+  gd+V+k+qpL+ ++s ++
  KKY19228.1 652 APMPCKVLRVDVQ-AGDAVQKDQPLVVIESMKM 683
                 5566678889999.9999999999999999875 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.044
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 108 tvtvkapisGvVteknvreGqyvqpgdtlftiad 141
                 ++ +++p +G+V +     G+  ++g++l++  d
  KKY19228.1 684 ETVIRSPSDGIVKRIVHDAGEICSAGTALVEFED 717
                 56799***********************998665 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.82   9.2e+02      49      93 ..     229     272 ..     227     277 .. 0.86
   2 ?    8.8   0.1    0.0014       1.5      45      82 ..     662     700 ..     641     716 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.82
      RnfC_N  49 gdkVlkGqkiaeaegfvsapvhasvsGtVkaiekrlvahgsgvea 93 
                 +d+Vl  + i++ +++  ++v+a   G+ +a+ +r  + +++ + 
  KKY19228.1 229 NDEVLIEKYITTPRHI-EVQVFADKLGHCVALGERDCSIQRRHQK 272
                 799999*******999.************9999998877766555 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0014
      RnfC_N  45 lvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaiek 82 
                  v+ gd V+k q +   e+  + + + +++ G Vk+i +
  KKY19228.1 662 DVQAGDAVQKDQPLVVIESmKMETVIRSPSDGIVKRIVH 700
                 499**********9988885679999*********9976 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00033      0.37      40      72 ..     664     696 ..     649     704 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00033
                 -TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEE CS
       GCV_H  40 evgtkvkkgeslaavEsvKaasevyapvsGevv 72 
                 ++g++v+k+++l ++Es K+ + + +p +G v 
  KKY19228.1 664 QAGDAVQKDQPLVVIESMKMETVIRSPSDGIVK 696
                 579***************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 4557.35
//
Query:       KKY19229.1  [L=994]
Description: putative dna helicase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.3e-31  107.0   1.2    2.2e-30  105.8   0.7    1.9  2  AAA_12           AAA domain
      1e-21   77.9   0.0    2.1e-21   76.9   0.0    1.5  1  AAA_11           AAA domain
    1.4e-06   28.2   0.0        1.7    8.3   0.0    3.4  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      2e-06   27.7   0.0    7.5e-05   22.5   0.0    2.5  2  AAA_30           AAA domain
      1e-05   25.9   0.0    6.3e-05   23.3   0.0    2.5  2  AAA_19           AAA domain
    4.5e-05   23.2   0.0     0.0001   22.0   0.0    1.6  1  UvrD_C_2         UvrD-like helicase C-terminal domain
    6.2e-05   22.3   0.0      0.011   15.0   0.0    2.8  3  PIF1             PIF1-like helicase
    0.00037   19.8   0.0     0.0065   15.8   0.0    2.8  3  DUF2075          Uncharacterized conserved protein (DUF2075)
     0.0014   19.0   0.0     0.0062   16.9   0.0    2.2  1  AAA_16           AAA ATPase domain
     0.0043   16.6   0.5      0.012   15.2   0.0    2.1  3  UvrD-helicase    UvrD/REP helicase N-terminal domain
  ------ inclusion threshold ------
      0.012   15.1   0.2       0.19   11.2   0.0    2.4  2  PhoH             PhoH-like protein
      0.021   15.2   0.2       0.28   11.6   0.0    2.8  2  AAA              ATPase family associated with various cellul
      0.027   14.2   0.0       0.14   11.9   0.0    2.1  2  IstB_IS21        IstB-like ATP binding protein
      0.029   13.9   0.1       0.12   11.9   0.0    2.1  3  AAA_25           AAA domain
      0.056   13.7   0.0       0.29   11.4   0.0    2.3  2  AAA_22           AAA domain
      0.089   12.8   0.1       0.46   10.5   0.0    2.2  2  AAA_5            AAA domain (dynein-related subfamily)
        0.1   12.7   0.9        1.6    8.7   0.0    3.3  4  AAA_14           AAA domain
       0.14   11.5   0.0       0.64    9.3   0.0    2.1  2  ATPase           KaiC
       0.14   11.8   0.0       0.62    9.7   0.0    2.2  1  Zot              Zonular occludens toxin (Zot)
       0.15   11.8   0.1       0.64    9.7   0.0    2.1  2  AAA_24           AAA domain


Domain annotation for each model (and alignments):
>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.6   3.2e+03       5      31 ..     582     607 ..     578     612 .. 0.74
   2 !  105.8   0.7   2.5e-33   2.2e-30       4     197 ..     738     932 ..     735     934 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.6
      AAA_12   5 lferllkkekekvvlLdtqYRmhpeIs 31 
                  fe ++++   +++ L++ YRm +++ 
  KKY19229.1 582 KFEGVHDRR-VQNIELSVGYRMLQRVG 607
                 566666666.88899*******98775 PP

  == domain 2  score: 105.8 bits;  conditional E-value: 2.5e-33
      AAA_12   4 SlferllkkekekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkrele......aqeale.epleplvfidvekseeekekkeksyiNeeEaelv 95 
                  l+ rl+ ++   ++lL+tqYRm p++sr+ + + Y+gkL+d+esv  r+ +      ++++++  +++ ++++d++  e++++++  s +Ne  ++  
  KKY19229.1 738 CLMSRLVGAG-FTYHLLTTQYRMVPQLSRIINLTAYNGKLEDHESVLVRNRPdakalqQYNHTKfGKQSSIILLDLKLGETKRTHS-GSRYNEVYIQHG 834
                 6999999999.99*******************************888888877788764444440445559999999999988886.************ PP

      AAA_12  96 vklvekllkkgseeerkkigvitpYraqvellkkklkekeeek.sekeievntvdgfQGrekdviilslVRsnekkeigflkderrlNValTRAkskli 193
                 + l+++l+++++++   +i+ +++Y+aqv l + +l+e  +e  ++ +++++tvd++QGre+d++i+ +   n  ++ gf+++  r NVal+RA+  ++
  KKY19229.1 835 ILLIKDLVDNFPQA---RIAYLAFYQAQVYLARTALRELCKEGnQYFQVTIDTVDRVQGREWDIVIIDFLIMN--QSAGFMSQMSRCNVALSRARIGMY 928
                 *************9...9*******************87666404455*********************9986..679*****************9999 PP

      AAA_12 194 ivGn 197
                 +  n
  KKY19229.1 929 VQSN 932
                 8766 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   2.3e-24   2.1e-21       1     259 [.     441     725 ..     441     727 .. 0.73

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 2.3e-24
      AAA_11   1 klndsqreaiksalsese.itliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgnee. 97 
                 +ln+sq++ +    ++++ + liqGPPGtgKT  i+++l+            +a++r L+++ +N  v +l+er+ +  ++++  +y +++  +  ee 
  KKY19229.1 441 NLNSSQKRVVIASQNTPGgVLLIQGPPGTGKTYLIIQMLKPF---------IKAGKRSLLTSATNDGVTDLAERIHEACIEQNDHSYAVRFYSIHVEEk 530
                 58******996666666669**********************.........67999*********************9999999999999999999994 PP

      AAA_11  98 ..........eriseavksvsleekvekrlekee.....kaqlakeiskeleklakelrafeeeeek................................ 149
                           +                 r e+ +       +  ++ + e+ ++ak l++ ++e  k                                
  KKY19229.1 531 ltklpatlvrP-----------------RDENARppihvPLTAEQQEALEQLEVAKLLQELHDEYFKtkfegvhdrrvqnielsvgyrmlqrvgiiptn 612
                 44444433221.................222221222222222222222222222222222222222455556677788889999************** PP

      AAA_11 150 ....eklkkskekskskleqerrklkkerkelskeleeaeesleeevldeaeivltTlsgagsklleklakkfdvviIDEAaqavEpstliPl..rlga 242
                     +++ +++  + + + q+r   +k  ke + +++ + ++l++++++ea++++tT + a s+++ ++a +  ++i DEA++ vE++t+ ++   +++
  KKY19229.1 613 gagpKATPEKYAGFCEYYDQYRLG-EKWEKEDQIRFTVEANELRHDIIREASVIITTPTLAISDTMARAA-RPHILILDEACRQVEAETI-AIrgTFQC 708
                 ***755555555555555555444.4444466777888888999*************************8.*****************95.66457888 PP

      AAA_11 243 kkvvLvGDpkQLpatvi 259
                   +++vGD kQ  + v+
  KKY19229.1 709 TPMIMVGDFKQGGPFVH 725
                 ***********888876 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0027       2.4       2      30 ..     462     488 ..     461     517 .. 0.78
   2 !    7.9   0.0    0.0025       2.3      55     103 ..     677     723 ..     645     758 .. 0.79
   3 !    8.3   0.0    0.0019       1.7     165     228 ..     848     925 ..     813     929 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0027
  Viral_helicase1   2 vvhGvpGcGKStlirkllrtsliltvnrp 30 
                      +++G pG GK+ li + l++   ++++++
       KKY19229.1 462 LIQGPPGTGKTYLIIQMLKP--FIKAGKR 488
                      799***************99..6555555 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0025
  Viral_helicase1  55 malvkstkgkililDEylllhaGyilllaalskaklvilfGDplQipfh 103
                      ma+ ++   +ililDE++++  ++  ++    ++   i++GD +Q++  
       KKY19229.1 677 MARAAR--PHILILDEACRQVEAETIAIRGTFQCTPMIMVGDFKQGGPF 723
                      333333..58***********999999******************8654 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0019
  Viral_helicase1 165 kvlvyltftqalkealgvr..............evttvhevqGltfdkVtlvllketdlelisesrenllvAlTRhrk 228
                      + ++yl+f qa +   +                 + tv  vqG ++d V++  l  ++   + ++ + + vAl+R+r 
       KKY19229.1 848 ARIAYLAFYQAQVYLARTAlrelckegnqyfqvTIDTVDRVQGREWDIVIIDFLIMNQSAGFMSQMSRCNVALSRARI 925
                      566666666655543333355666667778877799**************966655544455567999********95 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   8.4e-08   7.5e-05       2      66 ..     442     506 ..     441     535 .. 0.89
   2 ?    2.3   0.0      0.13   1.2e+02      82     141 ..     676     735 ..     644     791 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 8.4e-08
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeel 66 
                 ln++Q+++v a  +++  v +++Gp+GtGKt+++ ++ + + +ag+r ++ + t+    +Lae +
  KKY19229.1 442 LNSSQKRVVIASQNTPGGVLLIQGPPGTGKTYLIIQMLKPFIKAGKRSLLTSATNDGVTDLAERI 506
                 899*******************************9999999999999999999999988888765 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.13
      AAA_30  82 grarlepgtllivDEagmvdtkqlaallkaaekagakvilvGDerQlasV..eaGgvlrdlv 141
                  +ar ++ ++li DEa     +++ a+    +   + +i+vGD +Q ++   e+ +++++ +
  KKY19229.1 676 TMARAARPHILILDEACRQVEAETIAIRGTFQC--TPMIMVGDFKQGGPFvhENSNMFKEAM 735
                 445666779999999987777666666666655..88999***9998774222366666665 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   7.1e-08   6.3e-05       6      78 ..     454     578 ..     446     722 .. 0.60
   2 ?   -2.7   0.0       7.3   6.5e+03      51      82 ..     932     977 ..     920     984 .. 0.60

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 7.1e-08
      AAA_19   6 ealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae......atTiHrlal..................... 77 
                 ++++ +vll+ ++pGtGKT+++ ++++ ++++g    ++ ll + t+  +  l+er++++  e      a       +                     
  KKY19229.1 454 QNTPGGVLLIQGPPGTGKTYLIIQMLKPFIKAG----KRSLLTSATNDGVTDLAERIHEACIEqndhsyA-------Vrfysihveekltklpatlvrp 541
                 3778899**************************....6789***************96554444444441.......3333333344455555555555 PP

      AAA_19  78 ....................................l 78 
                                                      
  KKY19229.1 542 rdenarppihvpltaeqqealeqlevakllqelhdeY 578
                 5556666655555555555555555555555555550 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 7.3
      AAA_19  51 tgrAakelrerlaalgae................atTiHrlalldfdd 82 
                 +++A+++++++  + +++                a+T+ ++a +d+d 
  KKY19229.1 932 NRKAVEQVQNAR-T-LRKflaytykghvvidqepANTYYKIAAVDMDA 977
                 566666666543.1.111344455555555555677777777777765 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.1e-07    0.0001       2      49 ..     880     927 ..     879     929 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.1e-07
    UvrD_C_2   2 ayaltihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTRArekl 49 
                 ++++t+ ++QG e+++Vi++   + ++ +++ +     +a++RAr   
  KKY19229.1 880 VTIDTVDRVQGREWDIVIIDFLIMNQSAGFMSQMSRCNVALSRARIGM 927
                 6899*******************999999**99***********9765 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.7   4.2e+03     208     259 ..     105     154 ..      90     158 .. 0.69
   2 !   15.0   0.0   1.2e-05     0.011       2      57 ..     442     494 ..     441     503 .. 0.74
   3 ?    4.0   0.0     0.026        23     107     162 ..     673     729 ..     648     764 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.7
                 HHHHHHHCT---CCCCHH.................HHCHCCS---S.S--... CS
        PIF1 208 kwllkigdGkineedeeealieiPedlllkksedkieeivsevygd.llqelt 259
                 +++l+++ G+ +e     ++ + Pe +l++ s + +++++ + +++ + ++ t
  KKY19229.1 105 HLVLAVKLGRSEEGA---VVYSFPETMLIRISYRAVQSMMLTEIDHaVYHQAT 154
                 567777777765554...56799999999999988887765544442555444 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.2e-05
                 --HHHHHHHHHH......HCTS-EEEEESTTSSCHHHHHHHHHH.CHCTCCCEEEEE CS
        PIF1   2 LneeQkkvfdaiieavlnekgklfFvtGsgGtgKtflwkallkk.lrsegkivlavA 57 
                 Ln++Qk+v+     a +n  g+++ ++G  GtgKt+l  ++lk  +++ ++  l+ A
  KKY19229.1 442 LNSSQKRVVI----ASQNTPGGVLLIQGPPGTGKTYLIIQMLKPfIKAGKRSLLTSA 494
                 7788887764....558999*****************99998851555544444444 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.026
                 EEECGGGSBHHHHHHHHHHHHHHCT-....-SCCCC-EEEEE--TTS-----SSSSS CS
        PIF1 107 iwDEapmverecfealdrtlrdilkeke.idkpFGGktvvlgGDfrQilPviekgsr 162
                 i D +  + r     ld+  r++  e+  i+  F    +++ GDf+Q  P +++ s 
  KKY19229.1 673 ISDTMARAARPHILILDEACRQVEAETIaIRGTFQCTPMIMVGDFKQGGPFVHENSN 729
                 55555556666666799999999998777999******************8877664 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   7.2e-06    0.0065       3     102 ..     460     563 ..     458     581 .. 0.71
   2 ?   -1.2   0.0       1.1   9.4e+02      77     102 ..     671     696 ..     642     737 .. 0.66
   3 ?   -0.5   0.0      0.63   5.6e+02     343     359 ..     913     929 ..     904     932 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.2e-06
     DUF2075   3 vvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakke.ekkkkkeafeklssfinnlsef.....kkaeekkeepkedvvivD 95 
                 v+l++G +GtGKt++ +++l      + ++++ + s  ++ v  l e++ +   e+++ + a++ +s  +++  ++      +  +++++p+++v +  
  KKY19229.1 460 VLLIQGPPGTGKTYLIIQMLKPF--IKAGKRSLLTSATNDGVTDLAERIHEACiEQNDHSYAVRFYSIHVEEKLTKlpatlVRPRDENARPPIHVPLTA 556
                 79*******************99..99999999999999999999999987775444444444444444433333355555555566666666666666 PP

     DUF2075  96 EAhrllt 102
                 E + +l+
  KKY19229.1 557 EQQEALE 563
                 6666665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.1
     DUF2075  77 fkkaeekkeepkedvvivDEAhrllt 102
                       +++  + +++i DEA r  +
  KKY19229.1 671 LAISDTMARAARPHILILDEACRQVE 696
                 333444566677799******99877 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.63
     DUF2075 343 kNayrVLLtRGrkGlyi 359
                 + + +V L+R+r G+y+
  KKY19229.1 913 MSRCNVALSRARIGMYV 929
                 56789***********9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0     7e-06    0.0062      20      63 ..     453     499 ..     446     693 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 7e-06
      AAA_16  20 rsgrp.elvllsGesGvGKsslvrellralekd...........ggiflrgkcdql 63 
                 ++++p +++l+ G++G+GK+ l+ + l+++ k+           +           
  KKY19229.1 453 SQNTPgGVLLIQGPPGTGKTYLIIQMLKPFIKAgkrslltsatnD---------GV 499
                 45566799***************9988888888554444444432.........33 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       4.5     4e+03     185     191 ..     184     190 ..     135     266 .. 0.50
   2 !   15.2   0.0   1.3e-05     0.012      10      77 ..     455     518 ..     442     580 .. 0.81
   3 ?   -3.0   0.0       4.6   4.1e+03     286     294 ..     711     719 ..     701     720 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.5
                    HHHHHHH CS
  UvrD-helicase 185 lvskake 191
                    l s++++
     KKY19229.1 184 LQSDFEN 190
                    1111111 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.3e-05
                    HS-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHHCT CS
  UvrD-helicase  10 aslggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRieealkkaeqess 77 
                    +++gg +l+   +G+GKT+ +++     ik++    +r l+   Tn     l eRi+ea+ +++ +s 
     KKY19229.1 455 NTPGGVLLIQGPPGTGKTYLIIQMLKPFIKAG----KRSLLTSATNDGVTDLAERIHEACIEQNDHSY 518
                    448899**************************....77788889**************8777655443 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 4.6
                    EEEEE-GGG CS
  UvrD-helicase 286 lfmvGDpkQ 294
                    ++mvGD kQ
     KKY19229.1 711 MIMVGDFKQ 719
                    89******9 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00021      0.19       5      39 ..     442     478 ..     438     490 .. 0.80
   2 ?    1.3   0.1      0.23     2e+02     121     166 ..     684     728 ..     643     746 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00021
                 -SHHHHHHHHHHHH-S..EEEEE--TTSSTTHHHHHH CS
        PhoH   5 ktkeQkeylealkknd..ivfaiGpaGtGKtylaval 39 
                  +++Qk+++ a ++    ++ + Gp GtGKtyl +++
  KKY19229.1 442 LNSSQKRVVIASQNTPggVLLIQGPPGTGKTYLIIQM 478
                 67889998888875444599*************8876 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.23
                 EEEEE-SGGG--HHHHHHHHTTB-TT-E.EEEEE------------- CS
        PhoH 121 afvilDEAQnttkeqmkmfltRlGensk.vvvtGdvtqidlpkgkks 166
                  ++ilDEA  +++ + +++ +R  ++++ ++++Gd +q    ++++s
  KKY19229.1 684 HILILDEA--CRQVEAETIAIRGTFQCTpMIMVGDFKQGGPFVHENS 728
                 5789***9..56677788899999988659999****9888866443 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00032      0.28       1      20 [.     461     480 ..     461     518 .. 0.77
   2 ?   -0.4   0.0       1.6   1.5e+03      50      67 ..     677     691 ..     647     699 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00032
                 EEEESSTTSSHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavak 20 
                 +l+ GppGtGKT+l+ ++ k
  KKY19229.1 461 LLIQGPPGTGKTYLIIQMLK 480
                 5899*********9876655 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.6
                 HHHHHHTSTSEEEEEETG CS
         AAA  50 fkeakekakpsilfiDEi 67 
                 +  a++  +p+il++DE+
  KKY19229.1 677 M--ARAA-RPHILILDEA 691
                 2..3333.59*******7 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00015      0.14      50      84 ..     461     495 ..     451     524 .. 0.79
   2 ?   -1.5   0.0         2   1.8e+03     100     118 ..     674     692 ..     666     699 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
   IstB_IS21  50 ivllGpsGvGKshlaialgveavraglsvlfvrve 84 
                 +++ Gp+G+GK++l i + +  ++ag++ l ++++
  KKY19229.1 461 LLIQGPPGTGKTYLIIQMLKPFIKAGKRSLLTSAT 495
                 6789********************99998877653 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2
   IstB_IS21 100 aralkrllkvdllilDdlg 118
                 + +++r +++++lilD+  
  KKY19229.1 674 SDTMARAARPHILILDEAC 692
                 56789999********975 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00014      0.12      32     110 ..     457     527 ..     439     565 .. 0.77
   2 ?   -3.5   0.1       7.3   6.6e+03     115     150 ..     653     690 ..     634     695 .. 0.61
   3 ?   -3.7   0.0       8.1   7.2e+03     145     156 ..     879     890 ..     851     900 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
      AAA_25  32 agelallaGapgtGKttlaldlalava.tGkpwlgpvapeqgkVlyvsaEdsedelrrRlravg.ealrddarllvldlag 110
                  g++ l+ G+pgtGKt l +++                  ++  l  ++ d+  +l++R+++++ e++++   +++++++ 
  KKY19229.1 457 PGGVLLIQGPPGTGKTYLIIQMLKPFIkA----------GKRSLLTSATNDGVTDLAERIHEACiEQNDHSYAVRFYSIHV 527
                 5899*****************97554422..........346778888888888999999988855556666667766544 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 7.3
      AAA_25 115 pLfakd.rggtl.ltadvdaleaaieevegvrlvviDp 150
                  L++++ r+ ++ +t  + a+ +++ ++++++ +++D 
  KKY19229.1 653 ELRHDIiREASViITTPTLAISDTMARAARPHILILDE 690
                 45555313333355555567888888888888888885 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 8.1
      AAA_25 145 lvviDplsralg 156
                  v iD+++r+ g
  KKY19229.1 879 QVTIDTVDRVQG 890
                 344444444322 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00033      0.29       5      56 ..     458     502 ..     454     577 .. 0.78
   2 ?   -1.9   0.0       4.1   3.7e+03      84     100 ..     675     691 ..     669     698 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00033
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdl 56 
                  g+l++ G++GtGKT+l+ ++l+ + +      ++++ ++  +++++  +dl
  KKY19229.1 458 GGVLLIQGPPGTGKTYLIIQMLKPFIK------AGKRSLLTSATNDG-VTDL 502
                 6899*************9888877632......25555555555554.4455 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4.1
      AAA_22  84 qalraravielliiDEa 100
                 + + ++a++++li+DEa
  KKY19229.1 675 DTMARAARPHILILDEA 691
                 5555556679******9 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00051      0.46       2      31 ..     461     494 ..     460     507 .. 0.77
   2 ?   -2.2   0.0       4.3   3.9e+03      57      74 ..     674     691 ..     655     700 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00051
                 EEEE--SSSSHHHHHHHGGGGB....S--EEEEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal....nreveyvq 31 
                 +l++GppGtgK+ l+ ++++ +    +r++++ +
  KKY19229.1 461 LLIQGPPGTGKTYLIIQMLKPFikagKRSLLTSA 494
                 689***********99988877666555555555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.3
                 --------G-SEEEEESG CS
       AAA_5  57 splvraaregeilvlDEv 74 
                 s  +  a +++il+lDE 
  KKY19229.1 674 SDTMARAARPHILILDEA 691
                 4556677799******96 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.7   3.4e+03      68      90 ..     284     306 ..     239     315 .. 0.66
   2 ?    8.7   0.0    0.0018       1.6       3      31 ..     459     488 ..     457     523 .. 0.71
   3 ?   -2.5   0.0       5.4   4.8e+03      62      78 ..     678     696 ..     634     701 .. 0.58
   4 ?   -0.6   0.1       1.4   1.2e+03      20      77 ..     839     889 ..     836     910 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.7
      AAA_14  68 lflDEiqevpewekalkslvdeg 90 
                  f DE q+++e  +++ + v+e+
  KKY19229.1 284 NFVDESQRLTEGDTIILYGVEEE 306
                 58899999888888887777665 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0018
      AAA_14   3 kilvitGaRrvGKTtllkqlikell.vkke 31 
                  +l+i+G+  +GKT+l+ q++k  + + k+
  KKY19229.1 459 GVLLIQGPPGTGKTYLIIQMLKPFIkAGKR 488
                 5899****************9988743333 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 5.4
      AAA_14  62 e..ekktylflDEiqevpe 78 
                 +   + ++l+lDE+ +  e
  KKY19229.1 678 AraARPHILILDEACRQVE 696
                 1335778999999866555 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.4
      AAA_14  20 kqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqevp 77 
                 k+l+++   ++ +i y+++ + + + +++   l el++e    ++   + +D + +v+
  KKY19229.1 839 KDLVDN--FPQARIAYLAFYQAQVYLARTA--LRELCKEG---NQYFQVTIDTVDRVQ 889
                 444433..4689999999999888765533..33444442...233338888888775 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00071      0.64      20      70 ..     459     509 ..     455     547 .. 0.76
   2 ?   -2.2   0.0       2.3   2.1e+03     130     164 ..     852     887 ..     797     893 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00071
      ATPase  20 rvvlitGepGtGKtifalqFlikgaekygepgvfvtveepa.edlrenaksl 70 
                  v li G pGtGKt +  q l   ++  g++ ++ +   +  +dl e++++ 
  KKY19229.1 459 GVLLIQGPPGTGKTYLIIQMLKPFIKA-GKRSLLTSATNDGvTDLAERIHEA 509
                 5789***************99998888.988888776665546777776655 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.3
      ATPase 130 gl.ayeekeavaReilrqlvrvlkklgvTailvsek 164
                  l  y+++  +aR+ lr+l ++ +++ +++i + ++
  KKY19229.1 852 YLaFYQAQVYLARTALRELCKEGNQYFQVTIDTVDR 887
                 455688899999999999999888888888877665 PP

>> Zot  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0007      0.62       3      34 ..     461     492 ..     459     539 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0007
         Zot   3 slvtGapGsgKtsgavkkdllpalke.gRkiit 34 
                  l +G+pG+gKt+  +++ l+p++k+  R++ t
  KKY19229.1 461 LLIQGPPGTGKTYLIIQM-LKPFIKAgKRSLLT 492
                 6789**************.******73577776 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00072      0.64       5      23 ..     461     487 ..     458     520 .. 0.72
   2 ?   -2.1   0.0       2.9   2.6e+03      59      77 ..     862     888 ..     841     897 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00072
      AAA_24   5 iliyGpsgiGKTtlakel........g 23 
                 +li Gp+g+GKT+l+ ++        +
  KKY19229.1 461 LLIQGPPGTGKTYLIIQMlkpfikagK 487
                 6899************99544444433 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.9
      AAA_24  59 l........aaeladyktlviDtidel 77 
                 l         +e ++y  + iDt+d +
  KKY19229.1 862 LartalrelCKEGNQYFQVTIDTVDRV 888
                 44444455589999999*******976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (994 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.52
# Mc/sec: 5707.84
//
Query:       KKY19230.1  [L=531]
Description: putative transcriptional regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-10   40.5   2.0    4.1e-10   39.4   2.0    1.6  1  PHD       PHD-finger
     0.0029   17.1   3.1     0.0048   16.4   3.1    1.4  1  PHD_2     PHD-finger
  ------ inclusion threshold ------
      0.081   13.0   1.3       0.19   11.8   1.3    1.6  1  zf-CW     CW-type Zinc Finger


Domain annotation for each model (and alignments):
>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   2.0   6.8e-14   4.1e-10       9      51 ..     143     183 ..     138     184 .. 0.86

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 6.8e-14
                 TSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   9 sdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 ++++++++qCd+C+ w+H  C+++ +es +   +e++Ce+Ck+
  KKY19230.1 143 DTAGNFFIQCDKCQVWQHGGCVGLMDESMSP--DEYYCEECKP 183
                 56799********************995554..47******97 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   3.1     8e-07    0.0048       2      36 .]     147     182 ..     146     182 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8e-07
       PHD_2   2 npllsCdkCsvaVHasCYGvskesdgee.WlCrrCe 36 
                 n +++CdkC+v  H  C G+ +es + + ++C+ C+
  KKY19230.1 147 NFFIQCDKCQVWQHGGCVGLMDESMSPDeYYCEECK 182
                 678****************9988866445******5 PP

>> zf-CW  CW-type Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.3   3.2e-05      0.19       2      34 ..     149     182 ..     148     190 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.2e-05
       zf-CW   2 wVqCdkClKWRr..lptevdkselipekWvCsmnp 34 
                  +qCdkC+ W    +   +d+s   p++++C+  +
  KKY19230.1 149 FIQCDKCQVWQHggCVGLMDESMS-PDEYYCEECK 182
                 69********99754444477777.99****9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1757  (0.0979977); expected 358.6 (0.02)
Passed bias filter:                      645  (0.0359752); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.15u 0.48s 00:00:01.63 Elapsed: 00:00:00.60
# Mc/sec: 2682.80
//
Query:       KKY19231.1  [L=386]
Description: hypothetical protein UCRPC4_g04605 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.094   13.5   2.6       0.18   12.6   1.3    2.1  2  PRC2_HTH_1    Polycomb repressive complex 2 tri-helical domai
       0.13   11.9   0.0       0.22   11.2   0.0    1.3  1  Herpes_teg_N  Herpesvirus tegument protein, N-terminal conser
       0.24   11.6   6.6       0.45   10.7   6.6    1.4  1  DUF3340       C-terminal domain of tail specific protease (DU
        1.8    8.2  10.5      0.058   13.1   1.2    2.5  2  TAF4          Transcription initiation factor TFIID component


Domain annotation for each model (and alignments):
>> PRC2_HTH_1  Polycomb repressive complex 2 tri-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.6   7.2e+03      58      81 ..      73      96 ..      58      99 .. 0.69
   2 ?   12.6   1.3   4.1e-05      0.18      11      65 ..     245     300 ..     239     314 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.6
  PRC2_HTH_1 58 kikkekskekkkfpadiiFqaIss 81
                 ++++++ ++k+  + ii +aI++
  KKY19231.1 73 LTETSQDLKSKPSDQGIISAAIAN 96
                455666667777777888888875 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.1e-05
  PRC2_HTH_1  11 deiFveLvnaLmqyeekeeeseseskekksek....kkkkkkaeedeekeekikkeksk 65 
                 ++iF eL +aL +++e ++++e++++++k +     k    k ++ ++++++++k  ++
  KKY19231.1 245 ESIFGELPHALIRQYEIKDRKERRKAAEKRRLlekaK---MKGRKGKKQTKNANKAANT 300
                 68**********9999888777777776655533331...2222222222222222222 PP

>> Herpes_teg_N  Herpesvirus tegument protein, N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.9e-05      0.22      55     104 ..     213     260 ..     206     264 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.9e-05
  Herpes_teg_N  55 llrksgelkveyaqltelPkvvrldavtvkirrlselyGelkevlsrsfn 104
                   l +++ +l++eya l++ P    ++ + ++ +  ++++Gel ++l r++ 
    KKY19231.1 213 LQARQRKLQQEYANLHHPP--SLEEMWICEFCEYESIFGELPHALIRQYE 260
                   56778899999********..78899*********************996 PP

>> DUF3340  C-terminal domain of tail specific protease (DUF3340)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   6.6    0.0001      0.45      75     146 ..     261     332 ..     259     334 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0001
     DUF3340  75 ekkrkaereeqeakrlarenerekakglkplksllleknlekeeelekedekeaeeddpkdkekkDiylrEa 146
                 +k+rk++r+++e++rl ++++ + +kg+k+ k++ +++n+   ++++++  +++  ++    ++ D yl+E+
  KKY19231.1 261 IKDRKERRKAAEKRRLLEKAKMKGRKGKKQTKNANKAANTAAHQNTNQQAYDQQGLEQGGMGLQGDEYLDEG 332
                 689*****************************9977677777776666655555555577777788888875 PP

>> TAF4  Transcription initiation factor TFIID component TAF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   2.4      0.17   7.8e+02     159     213 ..      68     126 ..      37     223 .. 0.61
   2 ?   13.1   1.2   1.3e-05     0.058     125     188 ..     257     310 ..     249     383 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.17
        TAF4 159 ekklkaketakevqkeedek..arhraANatAlaavg.eprkKkyswmsagsg.sgggk 213
                 + ++   et++ ++++ +++  ++   ANatAl++   ++++ + s+ +++s+ +  ++
  KKY19231.1  68 NRRDPLTETSQDLKSKPSDQgiISAAIANATALLRKPlHNGQENTSLLDQQSKsPPTNS 126
                 55555666676666444443226777788888887665445544444333333133332 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.3e-05
        TAF4 125 kekeeeekrqakRieereglekaakdrskgedeeekklkaketakevqkeedekarhraANatA 188
                 +++e ++++++++++e+ +l+++ak        ++ ++++k+t+++  ++  + a h+++N  A
  KKY19231.1 257 RQYEIKDRKERRKAAEKRRLLEKAK--------MKGRKGKKQTKNA--NKAANTAAHQNTNQQA 310
                 5788888888888899999988888........4444444433322..2222223333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1570  (0.0875676); expected 358.6 (0.02)
Passed bias filter:                      656  (0.0365888); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.49
# Mc/sec: 2373.89
//
Query:       KKY19232.1  [L=538]
Description: putative mfs monosaccharide transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-75  253.6  14.1    3.9e-75  253.4  14.1    1.0  1  Sugar_tr  Sugar (and other) transporter
    4.7e-18   65.2  31.7    4.7e-18   65.2  31.7    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.18   12.3   0.0       0.33   11.5   0.0    1.3  1  FliG_N    FliG N-terminal domain


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.4  14.1   6.6e-79   3.9e-75       5     451 ..      22     475 ..      18     476 .. 0.90

  Alignments for each domain:
  == domain 1  score: 253.4 bits;  conditional E-value: 6.6e-79
                 HHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT...S CS
    Sugar_tr   5 aalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk...n 100
                  +++  l+gYd g+++ + t   ++k  g   ++        l+g+ivs++++G+++G+++a++++d  GRk+++ ++ + ++ g++l+++a  +    
  KKY19232.1  22 SSVAIALYGYDQGMMSLINTNFHYLKTMGIGPED-------PLVGIIVSVYYLGCTLGAVLASWFSDAKGRKPGIFACLATASLGNLLMFIAGLGfkkG 113
                 5667789*******99888777776666666666.......4789***********************************************9778889 PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-...TTHHHHHHHCCHHHHHHHHHHGGGS---HH CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn...adgwrillglqlvpallllilllflPESPr 196
                  +e++++gR+++G+gvG++ ++vP+y +E+A ++ Rg+       a +fG  +a+i+++ l +  +   ++ wr+++ +  v + l++++ + lPE+Pr
  KKY19232.1 114 GLELMLIGRIVMGLGVGGIDAVVPIYSAELASDHSRGKALAKEFQANIFGLNMAFIINVCLTHALGkwnQWAWRLPIIIMQVYPFLMFAVAYRLPETPR 212
                 9***********************************999999999999***********99666666999***************************** PP

                 HHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH......HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HHH CS
    Sugar_tr 197 ylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeee.kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks..llv 292
                 ++v +g+ ++ak++l ++ g e  ++ l+++++++e+e+++    ++++l  s+ ++ ++ ++v+ qi q ltG+ a+  y+p+ife lg+       +
  KKY19232.1 213 WYVLRGRPDAAKRSLDDVFGPERGSEILDQIISAHEEEEKKGqIGYIDMLNPSHAQFHPTCVVVMGQINQALTGYGAVSVYGPQIFELLGFGVAkaEFI 311
                 *************************************977776777888888888***********************************988877788 PP

                 HHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH...HHHHTTSS.......CHHHHHHHHHH.HHHHHTTTTHHHHHHHHHHSHTTTHH CS
    Sugar_tr 293 tiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg.ivalllvaks....kaasivaivfialf.ialfalgwgpvpwvlvsElfpqsvRs 385
                 t++ ++  f++   a+ l+dr+GRR+l++ Ga + +i f +l+    l++++ +    +    +  v i+ f ++ f++ w   pw++ +E++p+  R+
  KKY19232.1 312 TLGNYIFYFIMMTLAWILIDRLGRRRLMIYGAGILSISFGLLAvLGGLAYNQPKlhidTLGPAIPGVIILYFaTITFGIAWLVPPWLIPTEIYPSTARA 410
                 999999999999999************************999986666666666779644444444444333134688889999*************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGG CS
    Sugar_tr 386 kalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieel 451
                  ++ai+v +  lanf+++ll+pi +++++ ++ flvfa+ + +++ ++ +  pe  gr++ee +e 
  KKY19232.1 411 QGSAISVIIWGLANFAVTLLTPIGFNNLN-YMLFLVFAVTNGFAAWWTDWYCPESGGRSFEENQEF 475
                 *****************************.********************************8876 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2  31.7   7.9e-22   4.7e-18      11     349 ..      35     424 ..      23     425 .. 0.74
   2 !   14.2  22.2   2.6e-06     0.015      10     172 ..     285     458 ..     275     497 .. 0.75

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 7.9e-22
       MFS_1  11 arsilgpalplalaedlgispse..igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa......sslwlllvlrvlqGlgaga 101
                 ++s++++++  ++ ++ gi p    +g+++++y+lg+ +++++++++sd  Gr++ ++++l++ +lg ll+++a       +l l+l++r+++Glg g+
  KKY19232.1  35 MMSLINTNF--HYLKTMGIGPEDplVGIIVSVYYLGCTLGAVLASWFSDAKGRKPGIFACLATASLGNLLMFIAglgfkkGGLELMLIGRIVMGLGVGG 131
                 344455555..45577777777677******************************************44444334567767777*************** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee...... 188
                 + +++ ++ a+++++  rg+a++    ++ +G  ++ ++   l+++lg      Wr++ +i+ +  +l+f    + ++ ++++r+ +   +        
  KKY19232.1 132 IDAVVPIYSAELASDHSRGKALAKEFQANIFGLNMAFIINVCLTHALGkwnqwaWRLPIIIMQVYPFLMFA---VAYRLPETPRWYVLRGRPDaakrsl 227
                 **********************9766655555555555555555555555568899999999999999988...9999999999999888887899999 PP

       MFS_1 189 .......................kgtgpaplvpawkallkdpvl.w..illialllf...ffgfsglltllplylqevlglsglllaglllallalvga 258
                                        +++g+ +    +  +l++ +  +   +++++  +    +g+ +++++ p +  e lg++ +  a ++    +++ +
  KKY19232.1 228 ddvfgpergseildqiisaheeeEKKGQIG----YIDMLNPSHAqFhpTCVVVMGQInqaLTGYGAVSVYGPQI-FELLGFG-VAKAEFITLGNYIFYF 320
                 999988888888887776664442222222....33344444332122133333333223446666*******7.*******.7777777777788887 PP

       MFS_1 259 ilallagrlsdrlgrrrrlllallllllaalglallavt..............ssavllllvlvliGfglgfv.fpsllalasdlappeeagtasglfn 342
                 i++ la  l+drlgrrr ++ + ++l++++ +la+l+                  + ++  +l+++++++g++  ++ + + ++ +p  ++++ s++  
  KKY19232.1 321 IMMTLAWILIDRLGRRRLMIYGAGILSISFGLLAVLGGLaynqpklhidtlgpAIPGVI--ILYFATITFGIAwLVPPWLIPTEIYPSTARAQGSAISV 417
                 8887777777******************************9888888766633333333..55555555555545666778999999999999999999 PP

       MFS_1 343 tagslgg 349
                 ++++l+ 
  KKY19232.1 418 IIWGLAN 424
                 9999875 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2.6e-06
       MFS_1  10 larsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllf...a.ss...........lw.lllvl 91 
                 ++++++++  p  + e lg+ ++ + +++ + ++++++++ ++  l+dr+Grrr+++ g+ +++++ +ll+++   a ++           ++ ++++ 
  KKY19232.1 285 TGYGAVSVYGP-QIFELLGFGVAKAEFITLGNYIFYFIMMTLAWILIDRLGRRRLMIYGAGILSISfGLLAVLgglAyNQpklhidtlgpaIPgVIILY 382
                 45556666666.77788999999999*********************************9999999566666544334113444444555488777777 PP

       MFS_1  92 rvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll 172
                  +   +g ++l+p    + ++++p + r+++ ++  + ++l+     ll ++   +l++  +f+++a+   +a++   +  
  KKY19232.1 383 FATITFGIAWLVPPW-LIPTEIYPSTARAQGSAISVIIWGLANFAVTLLTPIGFNNLNY-MLFLVFAVTNGFAAW---WTD 458
                 777777778999988.57899**********************9999999999989985.899999999999966...433 PP

>> FliG_N  FliG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.5e-05      0.33      66     100 ..     214     248 ..     210     251 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.5e-05
                 CHHCHHHHHHHHHHHHHHSHHHHHHHCHHHHXXXX CS
      FliG_N  66 ylseggeeyarelLekalgeekaeellerltaeaq 100
                 y+ +g  ++a++ L   +g+e+ +e+l+++ + ++
  KKY19232.1 214 YVLRGRPDAAKRSLDDVFGPERGSEILDQIISAHE 248
                 56788999**********************97765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 3484.77
//
Query:       KKY19233.1  [L=1217]
Description: hypothetical protein UCRPC4_g04607 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-99  331.4   0.0    9.7e-99  330.9   0.0    1.1  1  DUF1479   Protein of unknown function (DUF1479)
    4.5e-77  258.5   0.0    7.2e-77  257.9   0.0    1.3  1  EMC1_C    ER membrane protein complex subunit 1, C-terminal
    9.1e-27   94.2   1.4    3.7e-19   69.3   0.2    2.6  2  PQQ_2     PQQ-like domain
    6.6e-08   32.1   6.6     0.0042   17.0   0.1    6.2  6  PQQ       PQQ enzyme repeat


Domain annotation for each model (and alignments):
>> DUF1479  Protein of unknown function (DUF1479)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.9   0.0  2.2e-102   9.7e-99     171     416 .]      10     244 ..       5     244 .. 0.97

  Alignments for each domain:
  == domain 1  score: 330.9 bits;  conditional E-value: 2.2e-102
                 T--B--ECCEESS-STHHHH-HHHHHHTHHHHTS-GGG--TTB-TTGGG-----..STT--SS--SEEEEEESS-B-TTCT-EEE-S-TT.HHHHHHHH CS
     DUF1479 171 gdasfaLgphvDgGsleRWedeeYrkvYkkvfeGeweeydpwdaaeRveakedlyngagacsvfRtfQGwlalsdvkpgeGtlrvlPlvklataYllLR 269
                 gd +faLgph DgGsleRWed eY+kvY+k++eG+we+ydp+da++Rv+ak+d+yngagac++fR+fQGwl++sd++pgeGtl+++Pl+k+ataYl+LR
  KKY19233.1  10 GDGKFALGPHSDGGSLERWEDPEYSKVYQKILEGKWEQYDPFDAKHRVSAKMDYYNGAGACTMFRFFQGWLSMSDTGPGEGTLKLCPLLKHATAYLILR 108
                 6779*********************************************************************************************** PP

                 CCSTTS-.............TT-STT--TTS-EE--TTT-HH..HHTT-EE---B-TT-EEEEETT--EEE-SBCSSSS-EEEEE--B-EESHHHHHHH CS
     DUF1479 270 pffeekkeeeelaeelkeeqdsklpgavpgsaqelteelhphLelketlvsiPdleaGDyvvWhcdlihavdkehegkkdssvlYipavPltqknaeyl 368
                 pf+++ +          ++ d  +pg++pg +qe+++  hp L+l++ +vs+P++++GDyv+Whcd ihavdkeh g++dssvlYipa+P+t+ n++yl
  KKY19233.1 109 PFMTTGS---------ISTLDAVFPGSIPGACQEYNDDFHPDLSLSSMMVSVPHVQPGDYVAWHCDGIHAVDKEHMGSGDSSVLYIPACPVTPSNVDYL 198
                 ***9998.........45679****************************************************************************** PP

                 HHHHHHHHHT---TTS-S--G...GGG-TT---GGG--HH.HHHCTT. CS
     DUF1479 369 arqrkaflrgkpppDFpsegsGlgeaefagrlteedlreveGlralgl 416
                  +qr+a ++ +pppDFp +g G ge  f g l++++l+e  Gl+a+g+
  KKY19233.1 199 VKQRQAAVAYSPPPDFPGAG-GAGELGFDGALDWSSLNED-GLQAMGM 244
                 *****************988.9*****************6.*****96 PP

>> EMC1_C  ER membrane protein complex subunit 1, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.9   0.0   1.6e-80   7.2e-77       1     213 []     995    1215 ..     995    1215 .. 0.98

  Alignments for each domain:
  == domain 1  score: 257.9 bits;  conditional E-value: 1.6e-80
      EMC1_C    1 sEnwivysyfne....kkkrqeivvveLyeskesnereklssaanssslea..velpevlsqsfifpegikalavttTkkgItsksll.lalesgqi 90  
                  sEnw++ys++ +    ++k +++v+ e+yes+ +n+r++l+s+ n+s+++   v +p v+sqsf++pe+i+++avt+T++gIt+++ll +++e+++i
  KKY19233.1  995 SENWFAYSFYGTvgtsSTKAFQLVIHEMYESSVPNDRGPLGSSVNQSTFDLgsVVQPYVISQSFLVPERISSMAVTQTSQGITTRQLLcTLPETNSI 1091
                  6*****************************************98887777778***********************************99******* PP

      EMC1_C   91 vslprrlldpRrpv.rkptaaekeeglipYepllpidpksvishkrevagvkkiltaptllEStslvlafGlDlfltrvaPsksFDlLskdFnkilL 186 
                  v++p+++ld+Rrpv r+p ++e+eegl++Y+p+l++dpk++++h+r+v+ ++ki+t+ptllEStslv+afG+D+f+tr++Ps +FD+L+k+Fnk +L
  KKY19233.1 1092 VGIPQQFLDARRPVdRDPNPSEREEGLFRYAPVLEFDPKWILTHSRDVLAIEKIITSPTLLESTSLVFAFGHDIFGTRLSPSMAFDVLGKGFNKGQL 1188
                  **************9********************************************************************************** PP

      EMC1_C  187 iltvvallvlvlvlrplvkrkklnkrW 213 
                  +ltvvallv+v +l p+v++k++++rW
  KKY19233.1 1189 VLTVVALLVGVGFLGPMVRKKQVDARW 1215
                  *************************** PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.2   8.2e-23   3.7e-19       3     234 ..     334     594 ..     331     597 .. 0.71
   2 !   23.4   0.1   8.4e-09   3.8e-05      63     171 ..     748     863 ..     743     917 .. 0.79

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 8.2e-23
       PQQ_2   3 gvvsaldaatGaelWrvdlar..plgggvsravlsggtlfvatgggrlvaldaatGkvlWettlegpvvga...........plvaegrvvvvasdgql 88 
                 + + a+++++G+++Wr+++++    g+ v  av ++g +++a  g +++a+da tG++lWe   +++v  a            + ++  v++ +   ++
  KKY19233.1 334 KILGAVNPKDGTIVWRQTVGEfeNPGSAVLAAVEGDGSIISA-AGQTVAAWDAMTGQLLWEHI-DETVEQAvslatvtpgisSTGSDVLVLFGKVPSVI 430
                 4559*************8865555788888899777777777.*****************964.555555566668888876677777777777888** PP

       PQQ_2  89 ialdaedGkrlWstqqrseepae..lrssaspava.gdtvvvges.sgklvaldpkdGkvlWerelaaprgtselsrvgdisgrpvvaeg.tVyassgq 182
                 ++l+a +G ++W+++++s  +++  ++ +++ +++    +++ +s ++k+++ldp++G++  +++l+ ++   ++s  +  +g  + a+   Vy ++ +
  KKY19233.1 431 RRLEAGSGAVKWEFKDNS-GNVPiaIGATPTGIYYlARHAALLTSgKLKVTILDPTSGEEKKQYTLSGDS---DISLETARFGLSTQASVpFVYLIERP 525
                 *************77777.6666325555555566744444444458889****************6666...45544445555555533567777777 PP

       PQQ_2 183 gr...........llaldlatgrrl.wske.issinglpildgdllyvvsa....gelialdratGavl 234
                 ++           ++ l +++++ +   +  i++++g++ ++++l+++ +a    +e++++d+++ a++
  KKY19233.1 526 YTslkispfgstkFTTLSIENNSGEdIVDVsIHGPKGTNGPAHFLVHLRTAnkgwAEVYHIDPKSLAIS 594
                 7522222222223344444444433355555999****************66***********986665 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 8.4e-09
       PQQ_2  63 tlegpvvga..........plvaegrvvvvasdgqliald.aedGkrlWstqqrseepaelrssaspavagdtvvvgessgklvaldpkdGkvlWerel 150
                 +l++++ ga           +++++ ++v++ dgq++ ld  +dGk +W+ +q+ +e+ e   +++ ++   ++ v+  + +  +ld+++G +l + ++
  KKY19233.1 748 KLPEKIAGAfapsdkdytsKFFEGNAIIVATWDGQVLSLDpMTDGKIKWR-YQTLGETSE-WNVKAIIINPREATVFLDRAGTLVLDVRTGALLRSNKS 844
                 5555555555555566665799****************************.999966666.667777777777777777999999********999999 PP

       PQQ_2 151 aaprgtselsrvgdisgrpvv 171
                 +  +++++  ++   sg++v+
  KKY19233.1 845 GFETRGVA--QIPAASGELVI 863
                 77665553..45555555554 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.14   6.4e+02      14      29 ..     338     353 ..     338     355 .. 0.81
   2 !    5.6   0.0    0.0036        16       9      26 ..     377     394 ..     370     398 .. 0.85
   3 ?    3.0   0.0     0.025   1.1e+02      16      31 ..     434     449 ..     424     455 .. 0.81
   4 ?    2.2   0.0     0.043   1.9e+02      12      33 ..     479     500 ..     475     502 .. 0.86
   5 !   17.0   0.1   9.3e-07    0.0042       1      32 [.     772     804 ..     772     810 .. 0.88
   6 ?   -1.8   0.0      0.81   3.6e+03      14      22 ..     830     838 ..     828     839 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.14
                 EEETTTCCEEEEEESS CS
         PQQ  14 AlDadTGkvlWrfktg 29 
                 A++ ++G+++Wr  +g
  KKY19233.1 338 AVNPKDGTIVWRQTVG 353
                 66678******98765 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0036
                 TSEEEEEETTTCCEEEEE CS
         PQQ   9 dGylyAlDadTGkvlWrf 26 
                 + ++ A Da TG++lW++
  KKY19233.1 377 GQTVAAWDAMTGQLLWEH 394
                 5678899*********85 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.025
                 ETTTCCEEEEEESSSC CS
         PQQ  16 DadTGkvlWrfktggp 31 
                  a +G v+W+fk ++ 
  KKY19233.1 434 EAGSGAVKWEFKDNSG 449
                 5779*******98776 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.043
                 EEEEETTTCCEEEEEESSSCGS CS
         PQQ  12 lyAlDadTGkvlWrfktggpvl 33 
                 +  lD ++G+++ ++ ++g+ +
  KKY19233.1 479 VTILDPTSGEEKKQYTLSGDSD 500
                 67799889*********99865 PP

  == domain 5  score: 17.0 bits;  conditional E-value: 9.3e-07
                 TEEEEEETTSEEEEEETTT.CCEEEEEESSSCG CS
         PQQ   1 gvvylgsadGylyAlDadT.GkvlWrfktggpv 32 
                 + +++++ dG+++ lD  T Gk++Wr++t g+ 
  KKY19233.1 772 NAIIVATWDGQVLSLDPMTdGKIKWRYQTLGET 804
                 578999**********9999********98765 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 0.81
                 EEETTTCCE CS
         PQQ  14 AlDadTGkv 22 
                  lD++TG +
  KKY19233.1 830 VLDVRTGAL 838
                 79*****87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.47
# Mc/sec: 7711.82
//
Query:       KKY19234.1  [L=316]
Description: putative short chain dehydrogenase reductase family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-36  123.5   0.0    9.6e-36  123.1   0.0    1.2  1  adh_short        short chain dehydrogenase
    1.3e-28  100.1   0.0    2.2e-28   99.4   0.0    1.3  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.7e-05   24.8   0.0       0.21   11.5   0.0    2.2  2  KR               KR domain
  ------ inclusion threshold ------
       0.16   12.7   0.0       0.32   11.7   0.0    1.4  1  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.1   0.0   2.1e-39   9.6e-36       1     192 [.       8     219 ..       8     222 .. 0.88

  Alignments for each domain:
  == domain 1  score: 123.1 bits;  conditional E-value: 2.1e-39
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHH.HHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S......... CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrsee.kleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi......... 87 
                 k++++tGa+sGI +++a+ l++++a+vv++d+  + +++e+++e  ++  + +a++ q+Dvtd+++++++++ a+k +g++d++  +AG+         
  KKY19234.1   8 KTAIITGAGSGINLEFARLLLQNDANVVFADIALRlEAKELVDEYSSDkdKPQAIFQQTDVTDWKQLDQMFQVAMKYFGTIDIVCPGAGVyephwsgfw 106
                 79***************************887755367899999999888899****************************************999888 PP

                 ..S--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEE......EEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE CS
   adh_short  88 ..tgsgpfselseeewervievNltgvflltravlpamlkqssGr......IvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnava 178
                    gs++ ++  +    + +++Nlt ++  t++++ ++++q++ +      I+ +sS+ag+ + +g+a Y A+K+a++g++rsla   +++girv ava
  KKY19234.1 107 ypPGSAESKDAVDGGRYAQLDINLTHPIRSTQLAISYFIEQRKKTpsqlkfIIHISSIAGQSAGFGTAIYVATKHAINGFVRSLAPLEQEYGIRVAAVA 205
                 6555555555555556677********************554433334566************************************************ PP

                 ESSBSSHHHHHHCT CS
   adh_short 179 PGlvdTdmakelre 192
                 PG+++T++ ++  e
  KKY19234.1 206 PGVIRTPLWTDHPE 219
                 *******9987665 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   0.0   4.8e-32   2.2e-28       1     218 [.      14     247 ..      14     255 .. 0.83

  Alignments for each domain:
  == domain 1  score: 99.4 bits;  conditional E-value: 4.8e-32
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSE..E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG.........C CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgae..v.lecDVtdeeqvealveevvekfgklDilvnnagiapk.........l 83 
                   Ga sgI  + A++l ++ a+vv++d+  ++  k+ v+e  ++ ++   +  ++DVtd +q++++++ +++ fg++Di++  ag+ ++          
    KKY19234.1  14 GAGSGINLEFARLLLQNDANVVFADIALRLeaKELVDEYSSDKDKPqaIfQQTDVTDWKQLDQMFQVAMKYFGTIDIVCPGAGVYEPhwsgfwyppG 110
                   889************************999655666666666554454369*********************************9999988866655 PP

                   SS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC........CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE- CS
  adh_short_C2  84 kgpfletsreefdraldvnlyslfllakaalplmkeg........gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspg 172
                   +++  ++ + +    ld+nl+  ++ ++ a+ ++ e+          i+++ss++++ +  ++++y a+K+a+++++r+lA    ++giRv av+pg
    KKY19234.1 111 SAESKDAVDGGRYAQLDINLTHPIRSTQLAISYFIEQrkktpsqlKFIIHISSIAGQSAGFGTAIYVATKHAINGFVRSLAPLEQEYGIRVAAVAPG 207
                   55555666666668899999999999999999444333567766667************************************************** PP

                   -BHCTGGGGSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGG CS
  adh_short_C2 173 pikTlaasgikgfdelleelearaplgrlgtpeevaeaalfLasde 218
                   +i+T+++++ ++    l+ + +     +++ peev++++l L+ ++
    KKY19234.1 208 VIRTPLWTDHPE---KLKFVTE---RDEWVLPEEVGAVMLALIEKD 247
                   ******998873...3333333...356789999999999998765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   4.7e-05      0.21       3      93 ..      10      99 ..       8     102 .. 0.83
   2 !   11.3   0.0   5.3e-05      0.24     126     164 ..     153     191 ..     144     211 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.7e-05
                EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT..T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------ CS
          KR  3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal..gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr 93
                 +itG+  g+ le+ar l+++ a+ +v+       + ++k+l++e ++     +  + + Dv+d +++ ++++ + + +++i  v   Agv +
  KKY19234.1 10 AIITGAGSGINLEFARLLLQNDAN-VVFADIA--LRLEAKELVDEYSSDkdKPQAIFQQTDVTDWKQLDQMFQVAMKYFGTIDIVCPGAGVYE 99
                69****************998776.4444444..677888899999987335599999*****************9999***99999999875 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 5.3e-05
                 S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHH CS
          KR 126 esldffvlfSSiagllgsagqanYaaaNaflDalaeyrr 164
                 ++l+f++ +SSiag    +g a Y a+ + +++++++ +
  KKY19234.1 153 SQLKFIIHISSIAGQSAGFGTAIYVATKHAINGFVRSLA 191
                 79************************9888888877654 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     7e-05      0.32       5      71 ..      14      84 ..      12      94 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7e-05
                     T-TTSHHHHHHHCTS.TSSEEEEEESSHHH..HHHHHHHHHH.TTTTEEEEESBCCGBSSSTTTEEEEEEE CS
  Methyltransf_25  5 GcGtGrltlalakrl.gkakvtgvDiseem..leaareraee.eglnvefvqgdaedlpfedgsfDlvvss 71
                     G+G+G +++ +   l ++a+v+  Di+ ++   e + e  ++ +++++ f+q d++d+++ d+ f + +  
       KKY19234.1 14 GAGSGINLEFARLLLqNDANVVFADIALRLeaKELVDEYSSDkDKPQAIFQQTDVTDWKQLDQMFQVAMKY 84
                     889998776655555569********75541033344444334667*******************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2328.25
//
Query:       KKY19235.1  [L=611]
Description: putative solute symporter family transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-20   72.8  20.4    3.5e-20   72.3  20.4    1.3  1  SSF            Sodium:solute symporter family
  ------ inclusion threshold ------
       0.94    9.5  11.1        1.4    8.9   6.0    2.9  2  CoA_binding_3  CoA-binding domain


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3  20.4   3.9e-24   3.5e-20      55     398 ..       7     364 ..       1     372 [. 0.78

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 3.9e-24
         SSF  55 lllllaerlr...nagalTlpdylskRfkgkrilvylsalslllvitlklsvdl...vggaklielalGlnyetavlllaaltalYtviGGllAvvytd 147
                 ll+ l+ + +     ga T+p+++ +R +g   + yl     +  +++++ v+    +gg + +  + G+n+++a +l+ +++a Y++ GGl+++   d
  KKY19235.1   7 LLFALIAIKIksnSPGAHTFPEIVLARHGGFAHITYL-----FNGFATNMLVGAclnLGGSQVVGALTGMNVYAACFLIPLVVAAYVIAGGLRSTFIAD 100
                 3333332222244779**************9834443.....33344444443311279999************************************* PP

         SSF 148 tiqavlmlvgali...lliivllevGgleslveklkeaapkv.vdlltpdslkllrdpltalslwl.glvlGvagl...philvRflaakdakailkgv 238
                    +v++ ++ l+   ++  +  evG ++ + + l ea+ k+ +  + +++  l  + +++l++ + +lv G   +   +   +R +a     ++ + +
  KKY19235.1 101 YTHTVILFIAILVfafTMYATSEEVGNIDRFYDLLVEASEKMpIAHNAGNGSYLTFKSVDGLIFAIdLLVAGFSTVwldQAYWQRAIASRPETSVKAYL 199
                 ******999988722244556679****************987444444444344455666666551455666666889***********999999999 PP

         SSF 239 lkltivlilvligmisiilfaiklagavp......kavgtevgvsniaypeLvvkllpnllaGlllavmlAaimstltslllsassaftkDlYkkirrk 331
                 l ++ + ++ +  +  ++l+ ++l    p      +a  ++++ + +  p  ++ ll+++ aGl+l   + a+ s+ ++ l++ ss++t D+Yk  ++ 
  KKY19235.1 200 LGGIAWYGIPFGFATCMGLGCAALTSN-PkfptypNALSAAQNGAGLSSPATAITLLGKGGAGLMLLLLFMAVTSSTSAELIAVSSLITFDIYKTYIKP 297
                 99999*999999999999999988764.55667779999999999***************************************************999 PP

         SSF 332 asakekelvgvsriivlvvisla..illavqeeqkgvlklvelafaglasavlavillalfwkrvneqG 398
                   a+ ++lv++s i +++ + ++  ++ ++++ + ++ +l  +   +++ a ++v  l l w+r+ +  
  KKY19235.1 298 T-ATSRQLVNMSHIGIIIYALVLavFCCILNAVDINLTWLLTVLGIIVGGASVPVG-LVLLWSRMSTVA 364
                 9.999999999999888877664113457788888899999887777777777765.568899998765 PP

>> CoA_binding_3  CoA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.018   1.6e+02      12      93 ..     367     450 ..     360     504 .. 0.65
   2 ?    8.9   6.0   0.00016       1.4      21      65 ..     518     565 ..     506     576 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.018
  CoA_binding_3  12 rsllrlllrvlsawllvll.llallsfslkdafSR...lwlaywavvglvllivsrllvravlrrlrrngrnerrvvavgggeela 93 
                    +s++  l+  l++w+++ l   +++s++++ ++       +a+w +  +v++i+s l+  +++ +     r++++ +a+ + ++ +
     KKY19235.1 367 ASPYIGLTAGLVSWFVTTLkRSGTISVTTTGNVTNavaGNIASWGTGAIVAIILSLLFPKKIHEN--DFARMQKINGATRSPKDGS 450
                    66777777888999999984455566665533333244889999999999999887776655533..3466666666666665555 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00016
  CoA_binding_3  21 vlsawllvllllallsfsl.k..dafSRlwlaywavvglvllivsrll 65 
                    v ++w++ l++++l+ f+l +   +fSR ++  w+vv+++ + +s ++
     KKY19235.1 518 VGANWAFFLIAIILVPFTLfGteYIFSRTFFKGWVVVSFIWVWCSMII 565
                    5578999999999999964354356**************998877544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       938  (0.0523175); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.51
# Mc/sec: 3597.83
//
Query:       KKY19236.1  [L=259]
Description: putative vacuolar amino acid transporter 6 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-40  136.5   0.2    9.5e-40  136.5   0.2    1.6  2  Aa_trans  Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.5   0.2   5.3e-44   9.5e-40     211     385 ..       1     188 [.       1     190 [. 0.91
   2 ?   -1.3   0.1     0.037   6.6e+02     116     142 ..     225     251 ..     208     256 .. 0.54

  Alignments for each domain:
  == domain 1  score: 136.5 bits;  conditional E-value: 5.3e-44
    Aa_trans 211 lleiqnelkdpskfkkmtkvlllsiilatvlyilvGlvGYltFGnevkgnillnlpkssilivivnlllvlhlilsfplqlhplrqvvenllikk.... 305
                 +++i ne+ d+s+  +   v+++si  a+ +y+lv+++GYl FGne+ gni  ++ +s  + +i+++++v+ +++s+plq+hp+r++v+ +l+++    
  KKY19236.1   1 MFSIVNEISDNSH-WHLASVVIASIGSAASIYVLVAVTGYLSFGNEIGGNIVAQYAPSV-SATIGRAAIVVLVMFSYPLQVHPCRASVDAVLKWRpiss 97 
                 79***********.6699*************************************9996.*************************************** PP

    Aa_trans 306 ...........eavagasekeapkskllrlvirlllvvityliAlsvpslakvlslvGatsstplsfilPalfhlkliktekksleklvkk 385
                                ++ + ++     ++  i++ +++++y++++sv+sl+kvl+ vG+t+st++sfilP+lf++k+ ++++   ++lvk+
  KKY19236.1  98 knkapeenpnnPLLPPNRKRNEDMGEIRFAAITTVIIILSYIVSMSVSSLEKVLAYVGSTGSTSISFILPGLFYYKISSPDSALHQRLVKQ 188
                 **99998887444444555555556667999**************************************************9888888765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.037
    Aa_trans 116 ffdtlllsnvyfilisaliiipLslip 142
                 f +++l +     +i+++++++ +l++
  KKY19236.1 225 FRRNMLRKLSLALAIYGVVVMVVCLVT 251
                 444433334444445555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       899  (0.0501422); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1578.99
//
Query:       KKY19237.1  [L=156]
Description: putative bax inhibitor family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-42  144.7  16.3    3.5e-42  144.6  16.3    1.0  1  Bax1-I      Inhibitor of apoptosis-promoting Bax1
  ------ inclusion threshold ------
      0.083   13.0   5.1       0.13   12.3   5.1    1.4  1  DUF5504     Family of unknown function (DUF5504)
        0.1   12.3   0.2        0.1   12.3   0.2    2.2  2  Spore_YhaL  Sporulation protein YhaL


Domain annotation for each model (and alignments):
>> Bax1-I  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.6  16.3   5.9e-46   3.5e-42      60     207 .]       5     150 ..       1     150 [. 0.94

  Alignments for each domain:
  == domain 1  score: 144.6 bits;  conditional E-value: 5.9e-46
      Bax1-I  60 rlkkkssalalallllftlleGlslspillvytgaiilqaflltaaifgglslyalttkrdlsglggflfagligliiaslvnlFlp.ssalelaisyl 157
                 + k+ks++++l++l +ft+le++s+s+i ++y + i+++a+++t++if++l+++a++tk+d++++ ++lf++l++lii++++  F+p ++ +ela++++
  KKY19237.1   5 YWKRKSYPTNLLFLTGFTALEAYSISVITSFYESRIVVEALIITLGIFVALTVFACQTKYDFTSWIPYLFTALWVLIIFGFMAAFFPhGGKIELAYGVV 103
                 4445677777*************************************************************************99999899******** PP

      Bax1-I 158 gvllfsglilyDtqkiierageygeedailaalsLyldfinlFlslLril 207
                 ++l+fs++il+Dtq++i+ +++++ee  i+aa++Lyld++nlFl +Lril
  KKY19237.1 104 AALIFSAYILVDTQLVIR-HYHVEEE--IAAAINLYLDILNLFLAILRIL 150
                 *****************7.7899***..********************97 PP

>> DUF5504  Family of unknown function (DUF5504)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   5.1   2.2e-05      0.13      46     121 ..      40     114 ..      13     117 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.2e-05
     DUF5504  46 ivilllvttmyfsvtpkllkwnekyelvwwlcylcapiylfltnlynstdlgytikfwlffgggaaliiiskyilk 121
                 iv+  l+ t+ + v+  ++  + ky++  w+ yl + +++++   + ++ + +  k+ l +g  aali  s yil 
  KKY19237.1  40 IVVEALIITLGIFVALTVFACQTKYDFTSWIPYLFTALWVLIIFGFMAAFFPHGGKIELAYGVVAALI-FSAYILV 114
                 666777778888899999********************************************999986.6889986 PP

>> Spore_YhaL  Sporulation protein YhaL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.5      0.95   5.7e+03      11      18 ..      79      86 ..      72      88 .. 0.58
   2 ?   12.3   0.2   1.7e-05       0.1       6      24 ..     100     118 ..      99     129 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.95
  Spore_YhaL 11 gIlfSgym 18
                 +++ g+m
  KKY19237.1 79 VLIIFGFM 86
                34444666 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 1.7e-05
  Spore_YhaL   6 YlviagIlfSgymavktak 24 
                 Y v+a+++fS+y++v t +
  KKY19237.1 100 YGVVAALIFSAYILVDTQL 118
                 99*************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1004  (0.0559987); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.49
# Mc/sec: 956.99
//
Query:       KKY19238.1  [L=226]
Description: putative ubiquitin conjugating enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-35  122.4   0.0    1.3e-35  122.1   0.0    1.1  1  UQ_con    Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.1   0.0   7.3e-40   1.3e-35       2     138 ..       8     154 ..       7     156 .. 0.91

  Alignments for each domain:
  == domain 1  score: 122.1 bits;  conditional E-value: 7.3e-40
                 HHHHHHHHHHSTTTTEEEEEEETTEECEEEE.EEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGS............ CS
      UQ_con   2 lqkelkelakkkpsgisaklvddenlfewkv.likgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLk............ 87 
                 l++elk+l  +k++ ++ +l+++ ++++w++ l++  +d++Y gg+Fk+++ fp+dYP++pP ++f  +++HPn++++G++c++iL+            
  KKY19238.1   8 LMNELKDL--QKEKWVTIELKNN-DIYTWDLaLLVINPDSLYYGGYFKARMAFPRDYPYSPPAFQFLRSLYHPNIYPDGRLCISILHqpgedtmsgela 103
                 67788876..4556677777775.9****962456779****************************************************999999999 PP

                 TTT--TTSHHHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHH CS
      UQ_con  88 eekWspaltlesvllsiqsLlaepnpesplnkeaakllkkdreeykkkvke 138
                  e+Wsp ++ e+vl+si+sLl++ + +sp+n++a+ ll+k++e+yk++vk+
  KKY19238.1 104 AERWSPIQRAETVLISILSLLDDAEVSSPANVDAGVLLRKEPEAYKQRVKQ 154
                 888**********************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1532.74
//
Query:       KKY19239.1  [L=1657]
Description: putative atp-dependent bile acid permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-52  177.7  27.8    4.4e-36  124.9   7.8    3.2  3  ABC_membrane   ABC transporter transmembrane region
      4e-51  173.1   0.0      2e-29  102.8   0.0    2.7  2  ABC_tran       ABC transporter
    1.2e-06   28.2   7.3      0.083   12.3   2.7    4.2  3  SMC_N          RecF/RecN/SMC N terminal domain
    3.5e-06   27.0   1.8      0.055   13.3   0.0    3.9  3  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    4.7e-06   27.3   9.6    0.00011   22.8   0.2    3.7  3  AAA_23         AAA domain
    8.1e-06   25.8   0.0      0.013   15.4   0.0    2.5  2  RsgA_GTPase    RsgA GTPase
    4.7e-05   23.0   0.2      0.091   12.5   0.1    2.7  2  AAA_29         P-loop containing region of AAA domain
    5.6e-05   23.4   1.3        4.8    7.5   0.0    3.6  3  AAA_22         AAA domain
    6.8e-05   22.9   0.0      0.061   13.4   0.0    2.9  2  MMR_HSR1       50S ribosome-binding GTPase
      0.001   18.2   0.1      0.021   13.9   0.0    2.3  2  T2SSE          Type II/IV secretion system protein
     0.0011   19.4   2.2        1.7    9.0   0.8    3.1  2  AAA_16         AAA ATPase domain
     0.0025   17.4   0.1       0.23   11.0   0.0    2.5  2  AAA_25         AAA domain
     0.0096   14.9   0.6       0.61    8.9   0.1    2.4  2  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
  ------ inclusion threshold ------
      0.016   14.5   0.1        2.9    7.1   0.0    2.5  2  Zeta_toxin     Zeta toxin
      0.016   15.6   0.2        4.5    7.7   0.0    3.9  3  AAA            ATPase family associated with various cellular
      0.024   14.7   0.0      0.024   14.7   0.0    3.5  3  DUF87          Helicase HerA, central domain
      0.025   13.5   0.1       0.14   11.0   0.0    2.1  2  AAA_10         AAA-like domain
      0.038   13.7   0.6          2    8.1   0.0    3.4  3  AAA_15         AAA ATPase domain
      0.047   13.3   1.9        3.6    7.1   0.2    3.4  3  AAA_27         AAA domain
      0.071   13.7   1.9        6.9    7.2   0.2    3.5  2  AAA_18         AAA domain
      0.077   12.3   0.3        1.5    8.1   0.1    2.3  2  FtsK_SpoIIIE   FtsK/SpoIIIE family
      0.081   12.5   1.8       0.78    9.3   0.2    2.4  2  cobW           CobW/HypB/UreG, nucleotide-binding domain
       0.09   12.5   0.8         13    5.5   0.0    3.3  3  DEAD           DEAD/DEAH box helicase
       0.12   12.4   0.0         15    5.5   0.0    2.9  2  ResIII         Type III restriction enzyme, res subunit
       0.15   11.8   5.7       0.74    9.5   0.0    3.2  4  IstB_IS21      IstB-like ATP binding protein
       0.18   11.3   0.3         19    4.7   0.0    2.4  2  AAA_7          P-loop containing dynein motor region
       0.31   11.1   1.3        5.5    7.1   0.2    3.3  2  CbiA           CobQ/CobB/MinD/ParA nucleotide binding domain
       0.31   10.9   2.1        5.1    7.0   0.1    2.7  2  NACHT          NACHT domain
        3.6    7.6   6.0         19    5.2   0.0    3.6  3  Dynamin_N      Dynamin family
        6.4    7.2   8.4         39    4.6   1.3    3.5  3  DUF1840        Domain of unknown function (DUF1840)


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.4      0.33     2e+02       9      86 ..     300     377 ..     292     383 .. 0.63
   2 !   61.3   5.9   1.9e-19   1.1e-16      95     273 ..     444     621 ..     440     622 .. 0.92
   3 !  124.9   7.8   7.4e-39   4.4e-36       1     271 [.     996    1302 ..     996    1305 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.33
                   HHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  ABC_membrane   9 ilagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilr 86 
                   +++ +  ++  l+l+ il++l + +d+   a  +y +ll+++g++q+++     ++  +++++l+  +  +++ k lr
    KKY19239.1 300 MFSNLFTFAPTLLLKAILEFLEKPKDTPINAAWLYVILLFFAGAIQAVADGQALWIGRKISIQLRGIIIGEIYSKALR 377
                   667777777788888888888765555543333444444444444444444444444789999998888888888887 PP

  == domain 2  score: 61.3 bits;  conditional E-value: 1.9e-19
                   SCHHHHHHHHHHHHHHHHHHHCHHHHHHHH.HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH CS
  ABC_membrane  95 nsvGellsrltndvsklrdglgeklglffq.slltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgi 190
                    + G+++++++ d  k++++ ++ ++l+   ++++ +++l+++ +lg + +++++++++l+++++ +ia+ +++++kk +  ++ +   ++E+l++i
    KKY19239.1 444 ANNGTIINLMAIDSFKVCEVSAYLHFLWASvPVQLTLAILLLYRILGLS-SIAGIVLMILVLPLNLFIARSFQQAQKKIMACTDARIHATNEVLQNI 539
                   579*************************873677788888888888887.8********************************************** PP

                   HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHH CS
  ABC_membrane 191 rtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfga 273
                   r +k+f++e++f+++ +++++ ++ a +++ i+++l  ++   l+ +++++ + f +t + +++l ++ ++  ls+f++l  +
    KKY19239.1 540 RIIKYFAWEQRFTDQVNDKRRAELAALRWRYILWSLAATVWSGLPIIITFASF-FIYTVIEKKDLVPSVAFPALSMFSLLRVP 621
                   *********************************************99999995.56667777899999999999999999876 PP

  == domain 3  score: 124.9 bits;  conditional E-value: 7.4e-39
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH......................................HHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane    1 liliillailagvlsplfplvlgrildtlldkgdpet......................................ealnvysllllllglaqfil 57  
                    +i++ ++ +++++ s+++++++ ++ +++ +  +++                                        ++++y+ ++l++g++ +++
    KKY19239.1  996 WIIAGFFFVAVQLGSVATNVWIRQWANSYHTLDTASAnsyqiesspytasstygsnfvimpqhgsanviakskqdVNVAYYLGVYLVIGAIYVFI 1090
                    6899*************************986444447799********************************999******************* PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH CS
  ABC_membrane   58 allqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailp 152 
                    ++ ++ +l   + ++s +l+ +l++ ++r+  +ffd+++ G+l++r+++dv+ +++ l+   + +++sl+ +v+++i++ ++ + + +++l+i+ 
    KKY19239.1 1091 CFSRELVLFFGSLHASWKLHEQLLEGVMRAKFKFFDSTPLGQLMNRFSKDVEAVDQELAPVAMGMLHSLAAVVTIVILISVITPGFLIAGLFISC 1185
                    *********************************************************************************************** PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  153 liilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGt 247 
                    +++ v +++   +++lk+ e+ +++++++ + E+l g+ t++a+g e++f++   + ++++++  i    +n++l  + +l+g l+ ++a   G+
    KKY19239.1 1186 IYATVGILYINSSRDLKRMESVQRSPLYQQFGETLAGVVTIRAYGDEARFVRDNFDRVNTHNRPFIYLWATNRWLAFRVDLAGALVSFFA---GI 1277
                    ************************************************************************************999998...88 PP

                    HHHHT.TSSTHHHHHHHHHHHHHHH CS
  ABC_membrane  248 tlvis.gelsvgdlvvflslfailf 271 
                    + + + g++++g +   ls++ +++
    KKY19239.1 1278 FVIRNaGKIDPGAAGLSLSYAITFT 1302
                    8888889******999999998887 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.0   2.5e-21   1.5e-18       3     136 ..     697     846 ..     695     847 .. 0.86
   2 !  102.8   0.0   3.4e-32     2e-29       1     137 []    1371    1564 ..    1371    1564 .. 0.92

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 2.5e-21
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren......esdeeiekalsk 91 
                 nv+++++ g +  i G++G+GK++Ll++l+g++k  eGe+ + g  ++e    ++++ l + +++  q++ l +++ ++en      +++++ +++++ 
  KKY19239.1 697 NVNVEFELGGLNIIAGPTGSGKTSLLMALLGEMKLLEGEVFIPGGRSREtlqpDPETGLVEAVAYAAQQAWLVNDT-IKENilfaspYDEDRYNEVVQV 794
                 99**************************************999766666688899999*****************9.**********555555555544 PP

                 STTGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  92 lglke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  +l+         ++t v++++  LSgGqkqr++lara+ +  + lllD++ 
  KKY19239.1 795 CSLERdfeildaGDQTLVGEKGIALSGGQKQRISLARAIYSYCRHLLLDDCL 846
                 4444444454456688899999***************************975 PP

  == domain 2  score: 102.8 bits;  conditional E-value: 3.4e-32
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................. 79  
                  l+ vs+k+++ ekv+ivG++GaGKS+L+ +l + l+ ++G+il+d+ d+  + l+ lr+ i ++pq+p+lf ++ +r+n                  
  KKY19239.1 1371 LRSVSFKVRPAEKVGIVGRTGAGKSSLALALFRGLEAEQGKILIDDVDIGLIGLQDLREAITIVPQDPTLFTGT-LRSNldpfgiftdeeifaalrr 1466
                  678***********************************************************************.9********************* PP

                  ...................................HHHTCHHHHHHHSTTGG.....TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                  ...................................xxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   80 ...................................esdeeiekalsklglke.....lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136 
                                                       d+ +++++s++++++       +++v +s+++LS+Gq+q ++larallk+p++l++DE+t
  KKY19239.1 1467 vqlisnktdddasssedtavqtnpstprfgtersdSTDATLARVVSNIRDENknifrNLQSPVAESGTNLSQGQRQLLCLARALLKNPRVLMMDEAT 1563
                  ******9999999999999999999999988776655555777777777777777777778888999*****************************9 PP

                  T CS
                  x RF
    ABC_tran  137 a 137 
                  a
  KKY19239.1 1564 A 1564
                  6 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00088      0.52      25      49 ..     706     727 ..     688     737 .. 0.79
   2 ?    1.7   0.0      0.24   1.4e+02     136     184 ..     818     863 ..     755     897 .. 0.71
   3 !   12.3   2.7   0.00014     0.083     135     209 ..    1494    1603 ..    1372    1610 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00088
                 SEEEEEESTTSSHHHHHHHHHHHCT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLG 49 
                 ++++i Gp GSGK++ll A+   LG
  KKY19239.1 706 GLNIIAGPTGSGKTSLLMAL---LG 727
                 589****************9...66 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.24
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHH.HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkva.ellk 184
                 +LSgG+k+ ++la   Ai+++ ++   llD+  +a D +  k +  e ++
  KKY19239.1 818 ALSGGQKQRISLA--RAIYSYCRH--LLLDDCLSAVDSHTAKHIFdEAIR 863
                 79*****976665..689999887..579999999999888765414555 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 0.00014
                  T........................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSE CS
                  x........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  135 e........................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQ 191 
                                                           +LS G+++L+ la        k   + ++De  a +D +  +k+ e l+e + +  
  KKY19239.1 1494 RfgtersdstdatlarvvsnirdenknifrnlqspvaesgtNLSQGQRQLLCLARA----LLKNPRVLMMDEATASIDYATDAKIQETLRELK-QNT 1585
                  044444444444444444444455555555566666666669********887643....345555779***********************9.556 PP

                  EEEE-SSHHHCCC-SCEE CS
                  xxxxxxxxxxxxxxxxxx RF
       SMC_N  192 fivislreemlekadklv 209 
                  +i i++r +++ + dk++
  KKY19239.1 1586 LITIAHRLQTIIDYDKVL 1603
                  99*****99998888775 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       5.1   3.1e+03     108     185 ..     236     320 ..     205     324 .. 0.81
   2 !   13.3   0.0   9.2e-05     0.055       1      20 [.     707     726 ..     707     751 .. 0.87
   3 !    6.8   0.2    0.0085       5.1       4      57 ..    1386    1429 ..    1384    1597 .. 0.47

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.1
      AAA_21 108 edvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrke.......rigllnifadyfgfakekrll 185
                  +v+  ++rg++ ++  +  ++  v++  ++q + ++   + +    +lll++ r         ++++l+ fa ++  + ++++l
  KKY19239.1 236 SWVDQIVWRGFKQTLEMKDVWNVAVKDKANRQLENFRQIKKTHSLAVRLLLYFKRTLliqgvwcMFSNLFTFAPTLLLKAILEFL 320
                 5777889999999999999999999999999999999999999999999999988888888888888888887777777777666 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 9.2e-05
      AAA_21   1 lnvliGpNgsGKSnLLdald 20 
                 ln++ Gp gsGK++LL al 
  KKY19239.1 707 LNIIAGPTGSGKTSLLMALL 726
                 79****************94 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0085
      AAA_21    4 liGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeip 57  
                  ++G+ g+GKS+L  al            +   ++g+  i++++  l + ++  +
  KKY19239.1 1386 IVGRTGAGKSSLALALFR----------GLEAEQGKILIDDVDIGLIGLQDLRE 1429
                  778888888888777722..........22233333344444444433333333 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.3      0.92   5.5e+02     154     193 ..     377     416 ..     208     437 .. 0.65
   2 !   22.8   0.2   1.8e-07   0.00011      12      39 ..     697     725 ..     691     727 .. 0.80
   3 ?    7.2   0.5     0.011       6.6      23      43 ..    1385    1405 ..    1382    1585 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.92
      AAA_23 154 rleelekeleeledekkllekleqekekekeleeleeele 193
                 r ++++++  e+++e+k  +++e  k+k+++l +l ++ +
  KKY19239.1 377 RRKAASTAEAEEKKEEKNKDDVEAPKSKRAKLMQLTRRKK 416
                 3333333333333333333333333333334444433333 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 1.8e-07
      AAA_23  12 dqeidF.skgltlItGpNGaGKTTildAi 39 
                 +++++F   gl++I Gp+G+GKT++l A+
  KKY19239.1 697 NVNVEFeLGGLNIIAGPTGSGKTSLLMAL 725
                 455666434*****************998 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.011
      AAA_23   23 lItGpNGaGKTTildAiklaL 43  
                   I+G +GaGK+++  A+  +L
  KKY19239.1 1385 GIVGRTGAGKSSLALALFRGL 1405
                  59***********98886555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.2e-05     0.013      22     132 ..     629     738 ..     621     748 .. 0.74
   2 !    7.5   0.0    0.0059       3.5      96     130 ..    1377    1412 ..    1353    1416 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.2e-05
                  EEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT...SEEEEECSTTSSHHHHH CS
  RsgA_GTPase  22 vvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkd...ktsvlvGqSGvGKStLi 116
                  v  ++e ++s++++d+fL + e+++    + +  +  +  +    +lke+  ++g +   ++ k++++++ ++ +++     + +++G++G GK++L+
   KKY19239.1 629 VAHVQETKVSVDRVDKFLKEEETEK---YVQIHEARKICPDP-KIALKEASLTWGPKASPLDRKESDAFRLINVNVEFelgGLNIIAGPTGSGKTSLL 722
                  6667778888888888886555444...45555554444444.46788889999999999999999999888777763224789************** PP

                  HHHCTT-----S---- CS
  RsgA_GTPase 117 nallpelelktgevse 132
                   all+e++l  gev  
   KKY19239.1 723 MALLGEMKLLEGEVFI 738
                  *******999888865 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0059
                   HCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase   96 llkd.ktsvlvGqSGvGKStLinallpelelktgev 130 
                   +++  + + +vG +G+GKS+L  al   le++ g++
   KKY19239.1 1377 KVRPaEKVGIVGRTGAGKSSLALALFRGLEAEQGKI 1412
                   5555456679***********999988777776665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   0.00015     0.091      16      41 ..     699     724 ..     694     729 .. 0.86
   2 !    7.5   0.0    0.0055       3.3      16      38 ..    1375    1397 ..    1371    1407 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00015
      AAA_29  16 tieidlkgatlltGpsGsGKSTllDA 41 
                  +e++l g  +++Gp+GsGK++ll A
  KKY19239.1 699 NVEFELGGLNIIAGPTGSGKTSLLMA 724
                 578999999**************955 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0055
      AAA_29   16 tieidlkgatlltGpsGsGKSTl 38  
                  ++++++++ + ++G++G+GKS+l
  KKY19239.1 1375 SFKVRPAEKVGIVGRTGAGKSSL 1397
                  56777778889**********98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1     0.018        11       7      26 ..     707     726 ..     703     738 .. 0.85
   2 !    7.5   0.0     0.008       4.8      10      33 ..    1386    1409 ..    1382    1452 .. 0.82
   3 ?    6.0   0.1     0.022        13      52     117 ..    1513    1583 ..    1479    1597 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.018
      AAA_22   7 ilvvtGesGtGKTtllrrll 26 
                 + ++ G++G+GKT ll  ll
  KKY19239.1 707 LNIIAGPTGSGKTSLLMALL 726
                 56899********9987765 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.008
      AAA_22   10 vtGesGtGKTtllrrlleqldeea 33  
                  ++G +G+GK+ l+  l++ l++e+
  KKY19239.1 1386 IVGRTGAGKSSLALALFRGLEAEQ 1409
                  89****************997553 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.022
      AAA_22   52 sskdllrellralglelkaerlsseellealeqalrarav.ielliiDEaqh.lr...seealeeLrslln 117 
                  + +d  ++++r+l+++  +++ ++++  ++l   +ra  + +++l+ DEa   ++    +++ e+Lr+l  
  KKY19239.1 1513 NIRDENKNIFRNLQSPVAESGTNLSQGQRQLLCLARALLKnPRVLMMDEATAsIDyatDAKIQETLRELKQ 1583
                  5566678899999999999888888888888888888888999*******997878744777777777655 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.018        11       3      22 ..     709     728 ..     708     766 .. 0.84
   2 !   13.4   0.0    0.0001     0.061       1      25 [.    1383    1408 ..    1383    1417 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.018
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 +i+G + +GK++L+ al+ge
  KKY19239.1 709 IIAGPTGSGKTSLLMALLGE 728
                 589***************96 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.0001
                  EEEEEESTTSSHHHHHHHHHTS.TEE CS
    MMR_HSR1    1 evaivGrpNvGKStLinaltge.kai 25  
                  +v+ivGr+ +GKS+L  al++  +a+
  KKY19239.1 1383 KVGIVGRTGAGKSSLALALFRGlEAE 1408
                  69****************99865555 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   3.4e-05     0.021     132     154 ..     708     730 ..     692     738 .. 0.88
   2 ?    1.4   0.0      0.23   1.3e+02     126     161 ..    1378    1413 ..    1351    1424 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.4e-05
       T2SSE 132 ilvsGgTgsGKttllyallkein 154
                  +++G+TgsGKt ll all e++
  KKY19239.1 708 NIIAGPTGSGKTSLLMALLGEMK 730
                 589****************9986 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.23
       T2SSE  126 vrerglilvsGgTgsGKttllyallkeinksderiv 161 
                  vr    + + G Tg GK+ l+ al   +++++ +i+
  KKY19239.1 1378 VRPAEKVGIVGRTGAGKSSLALALFRGLEAEQGKIL 1413
                  5555566688***************99999977775 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0058       3.5      28      46 ..     709     727 ..     701     764 .. 0.87
   2 !    9.0   0.8    0.0028       1.7      26     164 ..    1383    1583 ..    1364    1589 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0058
      AAA_16  28 llsGesGvGKsslvrellr 46 
                 ++ G+ G+GK+sl+ +ll 
  KKY19239.1 709 IIAGPTGSGKTSLLMALLG 727
                 689***********99985 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0028
      AAA_16   26 lvllsGesGvGKsslvrellralekd..............................ggif...lrgkcdqlesaipy....sa.laqalareellrq 84  
                   v ++G  G GKssl+ +l+r le++                                +f   lr + d       +    +  +  al r +l+  
  KKY19239.1 1383 KVGIVGRTGAGKSSLALALFRGLEAEqgkiliddvdigliglqdlreaitivpqdpT-LFtgtLRSNLDP------FgiftDEeIFAALRRVQLISN 1472
                  56799****************999998888888888888888888754444444220.111223333333......233333445555545444444 PP

      AAA_16   85 lldeaesaeleawrekleeala....................................avpelagaeasrllellkrllallsrderplvlvlDdlq 145 
                    d+++s++ + + ++ +   +                                    +v+e    +++  ++ll  + all++   p vl +D++ 
  KKY19239.1 1473 KTDDDASSSEDTAVQTNP---StprfgtersdstdatlarvvsnirdenknifrnlqsPVAESGTNLSQGQRQLLCLARALLKN---PRVLMMDEAT 1563
                  444433322222222222...134466666666666666655555555556555543322222222222222222222244444...7888888877 PP

      AAA_16  146 .wadeaslqllaaLlrlles 164 
                    +d a+ + ++++lr+l++
  KKY19239.1 1564 aSIDYATDAKIQETLRELKQ 1583
                  44444444446666666665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00039      0.23      32      57 ..     704     729 ..     698     748 .. 0.85
   2 ?    3.6   0.0     0.074        44      31      53 ..    1380    1401 ..    1365    1411 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00039
      AAA_25  32 agelallaGapgtGKttlaldlalav 57 
                 +g+l+++aG++g+GKt l++ l  ++
  KKY19239.1 704 LGGLNIIAGPTGSGKTSLLMALLGEM 729
                 799*****************998666 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.074
      AAA_25   31 pagelallaGapgtGKttlaldl 53  
                  pa++++ ++G++g+GK+ lal l
  KKY19239.1 1380 PAEKVG-IVGRTGAGKSSLALAL 1401
                  544444.58***********998 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.039        24      19      40 ..     709     730 ..     697     738 .. 0.89
   2 !    8.9   0.1     0.001      0.61      15      51 ..    1381    1417 ..    1371    1424 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.039
  TrwB_AAD_bind  19 livGttGsGKtqalekllrair 40 
                    +i+G tGsGKt  l +ll +++
     KKY19239.1 709 IIAGPTGSGKTSLLMALLGEMK 730
                    689**************98876 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.001
  TrwB_AAD_bind   15 tqhilivGttGsGKtqalekllrairargdraivlDl 51  
                     ++++ ivG tG+GK+  + +l r+++a + ++++ D 
     KKY19239.1 1381 AEKVGIVGRTGAGKSSLALALFRGLEAEQGKILIDDV 1417
                     56789****************************9886 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0048       2.9      19      41 ..     708     730 ..     693     749 .. 0.85
   2 ?    4.6   0.0     0.029        18      21      49 ..    1386    1414 ..    1377    1419 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0048
  Zeta_toxin  19 illgGqpGAGKselaellkdele 41 
                  +++G +G+GK++l+ +l  e++
  KKY19239.1 708 NIIAGPTGSGKTSLLMALLGEMK 730
                 589****************9997 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.029
  Zeta_toxin   21 lgGqpGAGKselaellkdelerqgnvvrl 49  
                  ++G +GAGKs+la +l + le++++ + +
  KKY19239.1 1386 IVGRTGAGKSSLALALFRGLEAEQGKILI 1414
                  789**********9999999855555555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0076       4.5       3      23 ..     710     730 ..     708     774 .. 0.86
   2 ?    1.6   0.0      0.56   3.4e+02       3      24 ..    1386    1407 ..    1384    1428 .. 0.85
   3 ?    0.7   0.1       1.1   6.6e+02      45      89 ..    1539    1586 ..    1506    1604 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0076
                 EESSTTSSHHHHHHHHHHHHT CS
         AAA   3 lyGppGtGKTllakavakelg 23 
                 + Gp G GKT+l  a+  e++
  KKY19239.1 710 IAGPTGSGKTSLLMALLGEMK 730
                 78***************9987 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.56
                  EESSTTSSHHHHHHHHHHHHTH CS
         AAA    3 lyGppGtGKTllakavakelgv 24  
                  ++G  G GK++la a+ + l++
  KKY19239.1 1386 IVGRTGAGKSSLALALFRGLEA 1407
                  6899***********9987754 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 1.1
                  HHHHHHHHHHHTS.TSEEEEEETGGGHHHHH..TTCCCHHHHHHHHHH CS
         AAA   45 kirelfkeakeka.kpsilfiDEidalaksr..sgseseeeervvnqL 89  
                    r+l+  a++   +p +l++DE+ a +      + +++ +e  +n+L
  KKY19239.1 1539 GQRQLLCLARALLkNPRVLMMDEATASIDYAtdAKIQETLRELKQNTL 1586
                  4555666666666679*******9998877732222333344444444 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.3       1.6   9.7e+02     146     183 ..     390     425 ..     364     466 .. 0.49
   2 ?    2.3   0.1      0.26   1.5e+02      28      48 ..     710     730 ..     708     738 .. 0.81
   3 ?   14.7   0.0     4e-05     0.024      25      60 ..    1383    1417 ..    1373    1419 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.6
       DUF87 146 lleelkkekeelrklknqaiarlldkledllrkggsf...s 183
                       +ek++ + ++ ++++++l++l++ ++k+++    +
  KKY19239.1 390 K-----EEKNKDDVEAPKSKRAKLMQLTRRKKKNQKAddsD 425
                 1.....23334555555555555555555555555554331 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.26
       DUF87  28 ilgsTGsGKSntvavLleell 48 
                 i g TGsGK+ +   Ll e+ 
  KKY19239.1 710 IAGPTGSGKTSLLMALLGEMK 730
                 6799*******9999998876 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 4e-05
       DUF87   25 HlAilgsTGsGKSntvavLleellekkgatililDp 60  
                   ++i+g+TG+GKS ++  L++ l    +++ili D+
  KKY19239.1 1383 KVGIVGRTGAGKSSLALALFRGLE-AEQGKILIDDV 1417
                  689********************9.99999999775 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2       1.3   7.9e+02      25      54 ..     709     738 ..     705     742 .. 0.83
   2 ?   11.0   0.0   0.00023      0.14      20     160 ..    1380    1525 ..    1368    1546 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.3
      AAA_10  25 liiGdlGnGKSvlakllvlyisllggkali 54 
                 +i G++G GK  l   l   + ll+g ++i
  KKY19239.1 709 IIAGPTGSGKTSLLMALLGEMKLLEGEVFI 738
                 699*******88888888888888888775 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00023
      AAA_10   20 nasasliiGdlGnGKSvlakllvlyisllggkaliiDpkkerekfketlpeiakkinvvtLdse...eenegvLdPlvllkeekeaeslaed.ilel 112 
                   a ++ i+G +G+GKS la  l+  + + +gk+li D           l+ + + i +v  d+       +  LdP+ ++ +e++ ++l +  ++++
  KKY19239.1 1380 PAEKVGIVGRTGAGKSSLALALFRGLEAEQGKILIDDVDIG----LIGLQDLREAITIVPQDPTlftGTLRSNLDPFGIFTDEEIFAALRRVqLISN 1472
                  5667789***************************9777665....2223333334444443332222556789********9999888876515566 PP

      AAA_10  113 llgvkkkesekkaalsea......veavlegkqrgllavieelrkedekvarei 160 
                   +++  + se + a++          ++ ++ +  l +v+ ++r e++++ r++
  KKY19239.1 1473 KTDDDASSSEDT-AVQTNpstprfGTERSDSTDATLARVVSNIRDENKNIFRNL 1525
                  666665555555.55544444444445556888999999999999999988887 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.72   4.3e+02      89     143 ..     381     436 ..     256     467 .. 0.65
   2 ?    8.1   0.0    0.0033         2      11      43 ..     693     725 ..     692     789 .. 0.86
   3 ?   -0.5   0.0       1.3   7.8e+02      28      43 ..    1386    1401 ..    1375    1419 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.72
      AAA_15  89 akeyektlkskekkkadll.lkkkesdlkktikdkklklkknelsdekisvekkks 143
                 a + e ++k++ek+k+d++  k k+ +l ++ + kk + k+++ + e+ +v  +++
  KKY19239.1 381 ASTAEAEEKKEEKNKDDVEaPKSKRAKLMQLTRRKKKNQKADDSDPENGNVAGNEE 436
                 22222333333333333321334444444444444444444444444444444443 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0033
      AAA_15  11 FRslkd.veidlseeltvliGkNnsGKSsileal 43 
                 FR +   ve +l   l+++ G+ +sGK+s+l+al
  KKY19239.1 693 FRLINVnVEFELGG-LNIIAGPTGSGKTSLLMAL 725
                 55555335556666.******************9 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.3
      AAA_15   28 liGkNnsGKSsileal 43  
                  ++G+ ++GKSs++ al
  KKY19239.1 1386 IVGRTGAGKSSLALAL 1401
                  8***********9998 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.094        56      25      46 ..     704     725 ..     694     729 .. 0.84
   2 ?    7.1   0.2     0.006       3.6     130     204 ..     898     972 ..     885     974 .. 0.91
   3 ?   -1.8   0.0       3.3     2e+03      20      46 ..    1375    1401 ..    1372    1403 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.094
      AAA_27  25 eadlhliyGpNEAGKstalrAi 46 
                   +l +i Gp  +GK+++l A+
  KKY19239.1 704 LGGLNIIAGPTGSGKTSLLMAL 725
                 5689***************997 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.006
      AAA_27 130 LreGGealleaegelgqlLfeasaGlaslrevleaLeaeadelfkprkskkrainealeeleeakkelreaqvra 204
                 + +G  +++ a+g lg  L++++ G    +++  +Le+++ ++ + ++ ++r+i +a+++ ++ ++e  +a v++
  KKY19239.1 898 VSQGSPEVVIASGALGDDLLKSRPGSVAPSRTPSNLEEQKAKVANGSADASRKIDDAHAADKSKTQEKANARVES 972
                 4689999**************************************************999999999988888876 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 3.3
      AAA_27   20 dfsaeeadlhliyGpNEAGKstalrAi 46  
                  +f+   a+   i+G   AGKs++  A+
  KKY19239.1 1375 SFKVRPAEKVGIVGRTGAGKSSLALAL 1401
                  5555555555699*********98775 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.2     0.012       6.9       2      21 ..     709     728 ..     709     885 .. 0.81
   2 ?    3.9   0.0      0.12        71       1      22 [.    1384    1405 ..    1384    1450 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.012
      AAA_18   2 lltGtpGvGKttlakeLskr 21 
                 +++G+ G+GKt+l  +L  +
  KKY19239.1 709 IIAGPTGSGKTSLLMALLGE 728
                 79***********9999333 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.12
      AAA_18    1 IlltGtpGvGKttlakeLskrl 22  
                  +++ G  G+GK++la +L + l
  KKY19239.1 1384 VGIVGRTGAGKSSLALALFRGL 1405
                  6899***********9994443 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0025       1.5      43      60 ..     709     726 ..     692     730 .. 0.82
   2 ?    1.5   0.0      0.26   1.6e+02      41      56 ..    1383    1398 ..    1372    1407 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0025
                   EEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  43 lvaGatgsGKStalntLi 60 
                   ++aG tgsGK+  l++L+
    KKY19239.1 709 IIAGPTGSGKTSLLMALL 726
                   8***************97 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.26
                    SEEEE--TTSSHHHHH CS
  FtsK_SpoIIIE   41 hllvaGatgsGKStal 56  
                     + ++G+tg GKS   
    KKY19239.1 1383 KVGIVGRTGAGKSSLA 1398
                    6779*********865 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.2    0.0013      0.78       4      22 ..     709     727 ..     707     736 .. 0.84
   2 ?    1.8   0.1      0.26   1.6e+02       3      36 ..    1384    1417 ..    1382    1422 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0013
                 EEEESTTCCHHHHHHHHHC CS
        cobW   4 vltGflGsGKTtLlnhlle 22 
                 +++G+ GsGKT+Ll +ll 
  KKY19239.1 709 IIAGPTGSGKTSLLMALLG 727
                 89*************9994 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.26
                  EEEEESTTCCHHHHHHHHHCT--SS-EEEEESS- CS
        cobW    3 tvltGflGsGKTtLlnhllenraglklavivNef 36  
                  ++++G  G+GK++L  +l +  + ++  +++ ++
  KKY19239.1 1384 VGIVGRTGAGKSSLALALFRGLEAEQGKILIDDV 1417
                  5799**********99999887777777777765 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.022        13      17      33 ..     708     724 ..     697     846 .. 0.84
   2 ?   -1.6   0.0       3.3     2e+03      16      32 ..    1383    1399 ..    1377    1412 .. 0.83
   3 ?    3.4   0.0     0.097        58     118     153 ..    1550    1585 ..    1503    1597 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.022
                 EEEEESTTSSHHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
        DEAD  17 vlvaaeTGsGKTlafli 33 
                  ++a++TGsGKT   + 
  KKY19239.1 708 NIIAGPTGSGKTSLLMA 724
                 5899********88654 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.3
                  EEEEEESTTSSHHHHHH CS
                  xxxxxxxxxxxxxxxxx RF
        DEAD   16 dvlvaaeTGsGKTlafl 32  
                  +v + ++TG+GK+  +l
  KKY19239.1 1383 KVGIVGRTGAGKSSLAL 1399
                  677899******98765 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.097
                  HCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  118 nlsqvrflVlDEadrlldqgfsdfinrilnqlpqit 153 
                   l++ r+l +DEa    d     +i++ l++l+q t
  KKY19239.1 1550 LLKNPRVLMMDEATASIDYATDAKIQETLRELKQNT 1585
                  29999***************************9877 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.026        15      27      46 ..     708     727 ..     690     738 .. 0.85
   2 ?    3.4   0.0      0.11        68      23      53 ..    1380    1410 ..    1360    1588 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.026
                 EEEEESTTSTHHHHHHHHHH CS
      ResIII  27 glikmaTGtGKTlvaaklie 46 
                 ++i+ +TG+GKT ++++l  
  KKY19239.1 708 NIIAGPTGSGKTSLLMALLG 727
                 57999*******99988865 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.11
                  TTSEEEEEESTTSTHHHHHHHHHHHH-S... CS
      ResIII   23 rdkrglikmaTGtGKTlvaaklierllkkgk 53  
                    +++ i+  TG+GK+ +a++l + l  +++
  KKY19239.1 1380 PAEKVGIVGRTGAGKSSLALALFRGLEAEQG 1410
                  556888999************9999888765 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.3     0.096        57      51      67 ..     709     725 ..     704     734 .. 0.88
   2 ?   -3.0   0.0       8.8   5.3e+03     101     150 ..     831     880 ..     823     882 .. 0.60
   3 ?    9.5   0.0    0.0012      0.74      38      67 ..    1371    1401 ..    1345    1415 .. 0.81
   4 ?   -2.9   0.3       7.8   4.7e+03      77     121 ..    1565    1612 ..    1557    1615 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.096
   IstB_IS21  51 vllGpsGvGKshlaial 67 
                 ++ Gp+G GK+ l +al
  KKY19239.1 709 IIAGPTGSGKTSLLMAL 725
                 789**********9997 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8.8
   IstB_IS21 101 ralkrllkvdllilDdlgllpldqaeaellf.eviekry..errsiiitsnlp 150
                 ra+ ++   + l+lDd+ l  +d++ a+++f e i  r    r+ i++t n++
  KKY19239.1 831 RAIYSYC--RHLLLDDC-LSAVDSHTAKHIFdEAIRGRLmdHRTCILVTHNVT 880
                 4444444..45778996.66677777777664677777532456677787765 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0012
   IstB_IS21   38 Latlsf.iekkenivllGpsGvGKshlaial 67  
                  L++ sf ++ +e + ++G +G+GKs la al
  KKY19239.1 1371 LRSVSFkVRPAEKVGIVGRTGAGKSSLALAL 1401
                  6777776788999*****************9 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 7.8
   IstB_IS21   77 svlfvrvedLveelkrarrdg..klaralkrllkv.dllilDdlgllp 121 
                  s+ + + +++ e+l+  +++    +a++l++++   ++l+lD   +++
  KKY19239.1 1565 SIDYATDAKIQETLRELKQNTliTIAHRLQTIIDYdKVLVLDKGEVVE 1612
                  666766666666666655554224556666666665799999765555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.054        33      38      58 ..     710     730 ..     705     736 .. 0.88
   2 ?    4.7   0.0     0.032        19      34      61 ..    1382    1409 ..    1374    1414 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.054
       AAA_7  38 lvGptGtGKtviikdllkkld 58 
                 + GptG+GKt++++ ll +++
  KKY19239.1 710 IAGPTGSGKTSLLMALLGEMK 730
                 78***********99988775 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.032
       AAA_7   34 kpvllvGptGtGKtviikdllkkldkek 61  
                   +v +vG tG GK++++  l++ l+ e+
  KKY19239.1 1382 EKVGIVGRTGAGKSSLALALFRGLEAEQ 1409
                  67889**************999999776 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.97   5.8e+02       3      20 ..     709     726 ..     707     736 .. 0.84
   2 ?    7.1   0.2    0.0091       5.5       6      38 ..    1388    1420 ..    1386    1587 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.97
                 EEESSTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
        CbiA   3 iastkGGvGKTtlaanLa 20 
                 i+++  G+GKT+l+ +L+
  KKY19239.1 709 IIAGPTGSGKTSLLMALL 726
                 678889*******99986 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0091
                  SSTTSSHHHHHHHHHHHHHHTT--EEEEEEEES CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA    6 tkGGvGKTtlaanLaralarrglrVllvDaDpq 38  
                  +  G+GK++la++L r l  ++ ++l  D+D  
  KKY19239.1 1388 GRTGAGKSSLALALFRGLEAEQGKILIDDVDIG 1420
                  568*****************9999999999987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0086       5.1       4      22 ..     709     727 ..     707     733 .. 0.86
   2 ?    2.6   0.2      0.19   1.1e+02       4      28 ..    1385    1409 ..    1382    1413 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0086
                 EEEC-TTTCHHHHHHHHHH CS
       NACHT   4 ilqGeaGsGKTtLlqklal 22 
                 i+ G+ GsGKT Ll  l  
  KKY19239.1 709 IIAGPTGSGKTSLLMALLG 727
                 799***********99875 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.19
                  EEEC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT    4 ilqGeaGsGKTtLlqklalawaegk 28  
                   + G+ G GK+ L+  l + + +++
  KKY19239.1 1385 GIVGRTGAGKSSLALALFRGLEAEQ 1409
                  589***********99998887665 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.6       7.4   4.4e+03      50      92 ..     386     428 ..     361     456 .. 0.63
   2 ?    5.2   0.0     0.033        19       3      27 ..     710     734 ..     709     754 .. 0.87
   3 ?    3.4   0.2      0.12        70       1      18 [.    1384    1401 ..    1384    1404 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 7.4
                 ...SSEEEET-EB--CHHHHHHHHHHHHHHHTSSSS--SS-EE CS
   Dynamin_N  50 avkeelkekekkledfsevreeieketekiagankgiskkvil 92 
                 a++++ ++++++ e  +  r ++++ t+++++++k++++++++
  KKY19239.1 386 AEEKKEEKNKDDVEAPKSKRAKLMQLTRRKKKNQKADDSDPEN 428
                 2222233335555555666666666666666666665555444 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.033
                 EEEBTTTTHHHHHHHHHTS--S--- CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlgedilprg 27 
                 + G + sGK+S+l aLlge  l  g
  KKY19239.1 710 IAGPTGSGKTSLLMALLGEMKLLEG 734
                 579999************9776655 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.12
                  EEEEEBTTTTHHHHHHHH CS
   Dynamin_N    1 iavvGsqSsGKSSvlnaL 18  
                  + +vG + +GKSS++ aL
  KKY19239.1 1384 VGIVGRTGAGKSSLALAL 1401
                  679***********8776 PP

>> DUF1840  Domain of unknown function (DUF1840)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   1.3     0.065        39      31      85 ..     361     411 ..     346     432 .. 0.67
   2 ?    2.5   1.1       0.3   1.8e+02      32      83 ..     919     970 ..     909     979 .. 0.80
   3 ?    1.1   0.0      0.84     5e+02      30      69 ..    1448    1486 ..    1429    1511 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.065
     DUF1840  31 lterGaitaedlpaaiakLeaaiaaekaeeaeeeeeeeeeekeeekeeeeeevsL 85 
                 ++ rG+i  e   +a+++  a +a+++++++e+++++ e+     k+++++ ++L
  KKY19239.1 361 IQLRGIIIGEIYSKALRRKAASTAEAEEKKEEKNKDDVEA----PKSKRAKLMQL 411
                 6778999999999999987777766666655555544333....33333444444 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.3
     DUF1840  32 terGaitaedlpaaiakLeaaiaaekaeeaeeeeeeeeeekeeekeeeeeev 83 
                 + +G ++++  p+ +++ +a++a+ +a+++++ +++++++k++++e+++++v
  KKY19239.1 919 SRPGSVAPSRTPSNLEEQKAKVANGSADASRKIDDAHAADKSKTQEKANARV 970
                 5789999*****************9999999988888877766666666555 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.84
     DUF1840   30 slterGaitaedlpaaiakLeaaiaaekaeeaeeeeeeee 69  
                  +l+  G++t e++ aa+++++   ++  +++a+++e+++ 
  KKY19239.1 1448 NLDPFGIFTDEEIFAALRRVQLISNKT-DDDASSSEDTAV 1486
                  46677**************97655544.444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1641  (0.0915277); expected 358.6 (0.02)
Passed bias filter:                      922  (0.0514251); expected 358.6 (0.02)
Passed Vit filter:                       136  (0.00758548); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 1.24u 0.34s 00:00:01.58 Elapsed: 00:00:00.53
# Mc/sec: 9348.41
//
Query:       KKY19240.1  [L=391]
Description: putative epoxide hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-20   74.1   1.6    3.4e-18   67.1   1.6    2.1  1  Abhydrolase_6    Alpha/beta hydrolase family
    6.4e-20   71.9   0.1    8.4e-19   68.2   0.1    2.0  1  Abhydrolase_1    alpha/beta hydrolase fold
    7.3e-13   48.3   0.0    8.5e-11   41.6   0.0    2.1  2  Hydrolase_4      Serine aminopeptidase, S33
     0.0045   16.5   0.0       0.01   15.3   0.0    1.5  1  Peptidase_S9     Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.014   14.3   0.0      0.022   13.7   0.0    1.3  1  Chlorophyllase2  Chlorophyllase enzyme
      0.017   14.7   0.0       0.04   13.6   0.0    1.7  1  Esterase         Putative esterase
      0.083   11.9   0.0       0.11   11.4   0.0    1.2  1  Chlorophyllase   Chlorophyllase
       0.14   11.7   0.0         15    5.1   0.0    2.2  2  Peptidase_S15    X-Pro dipeptidyl-peptidase (S15 family)


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   1.6   1.5e-21   3.4e-18       1     218 [.      44     381 ..      44     383 .. 0.48

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 1.5e-21
                    EEEE--GC.....GC.HHHHHHHHCCTCEEEEE--TTSTS-......GGCS--HHH......CHHHHHHHCCTT..TTSE.EEEEETCHHHHHHH. CS
  Abhydrolase_6   1 vlllHGagssassWl.vapLaallaagvhvlapDlpGhGrs......dpppldled......ladlaalldelaagggpv.vlvGHSlGGalala. 81 
                    +lllHG++  a+sW+ v pL  l++ag+ v+apD +G+Gr+        +  +l++      + d++ l+++l  g+++v +lvGH++G++ a++ 
     KKY19240.1  44 ILLLHGFPDLAYSWRhVIPL--LASAGYYVVAPDQRGYGRTsgwdtsGFSQVNLQEfsmirlVTDIVVLVNAL--GYRKVtCLVGHDFGAVAAAHc 135
                    89****9999****624444..44444777*********5522211122223333344444457778888888..5***************99996 PP

                    HHHCC..EE..EEES-....----TTTS----TTHHHHHH............TT-C..CCCH.CCH...............S-HSCCCCHHHCCCC CS
  Abhydrolase_6  82 aaplalvvg..vlldppp..talpagllaaalelllalla............llrl..lawl.sre...............plprlfladedadaa 143
                    a++ ++++   vl++ p   t   + + a  +el+ ++ +            +  +  ++w  s                 ++ r++++  +  a+
     KKY19240.1 136 AVSRPDLFEklVLMSHPFkgTLNLPFNTANGAELPSGPVPvdmeaelakldrP--RkhYRWYyS-SevaneemlepkdtlhDFLRGYFHLKS--AD 226
                    55555555558888885565222222233333333333332222222332212..133555541.122222333333333322224444222..44 PP

                    HCHCCCGHH..................................................HHCCHHCHTTCCHHTT-TTGCEEECTT-CHHHHCHHC CS
  Abhydrolase_6 144 wrarlarla..................................................allaglgllpaaawadlpvpllvlggeDplvprller 189
                    w  ++  ++                                                   l  ++ +++++ + + + ++ v   +D++++r  + 
     KKY19240.1 227 WEGNDPQPLkgweadefakmpvyyvmdkedgmraavaremkredseiisrkgsrwlsdeELGVYVQEFSRTGFQGGLNWYRV--QTDAVLRRDTAL 320
                    4444444443333333333333333333333333333334333333333333333222211112223333333333333333..444444433222 PP

                    CCHSTTEEET................................CE...SSS-HHHHSH.HHHH CS
  Abhydrolase_6 190 llaqagarlp................................vvlpgaGHlphleep.deva 218
                    l+  ++ ++p                                + ++gaGH++ +e+p ++++
     KKY19240.1 321 LAG-RKIEVPcfyvsglkdwgnhqepgslkkmkdhctrlvaiKFIEGAGHWLPQEQPrEATN 381
                    222.3333335555555566666666666666666666666688999999777779977665 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.1   3.8e-22   8.4e-19       1     252 [.      42     371 ..      42     376 .. 0.80

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 3.8e-22
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB......CHHSHHHHHHHHHHHHHHCTTSSEE.EEEETHHHHHHHHH CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacin.....ddygtasvaddldrildalgddklt.lvGhSmGGmialay 90 
                    p++++lhG+p+ +++w+   ++p La +g+ v+++D+rG+g++s + ++       ++++++ +  d+  +++alg +k+t lvGh++G   a++ 
     KKY19240.1  42 PLILLLHGFPDLAYSWRH--VIPLLASAGYYVVAPDQRGYGRTSGWDTSGFsqvnlQEFSMIRLVTDIVVLVNALGYRKVTcLVGHDFGAVAAAHC 135
                    789***************..***********************999998779999***************************************** PP

                    HHHHGGGEEEEEEESE......CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH................. CS
  Abhydrolase_1  91 aaeyperVkalvllga......idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkf................. 163
                    a   p+   +lvl++       + p++  + a++ + + + d+    a  + + ++ +++ ++  a e  ++++d l++                 
     KKY19240.1 136 AVSRPDLFEKLVLMSHpfkgtlNLPFNTANGAELPSGPVPVDMEAELAKLDRPRKHYRWYYSSEVANEEMLEPKDTLHDflrgyfhlksadwegnd 231
                    ***************999999999999999999999999999888888888888888888888888888888888888889999988888899999 PP

                    ...............................HCHHHCCHHHHHHHCHHHHHHHHH...HHHHHHHCCHHHHHHHHHC.................TH CS
  Abhydrolase_1 164 ...............................pdkskrfpssgsdnasslatgalk...sieqwpttdsaklllrlre.................lk 208
                                                   ++ +kr +s+ + +  s    + +   ++++++ t +   l+   +                 ++
     KKY19240.1 232 pqplkgweadefakmpvyyvmdkedgmraavAREMKREDSEIISRKGSRWLSDEElgvYVQEFSRTGFQGGLN---WyrvqtdavlrrdtallaGR 324
                    9999999999998888888888888888887333333333333333333333332000333333333333333...23336666677777788888 PP

                    HHHSEEEEEEETTCSSSCH..HHHHHHHHCHTS.EEEEEEETCSSSH CS
  Abhydrolase_1 209 nvlaptlvisgtsDplvpp..kaledlaqllpk.krlvvisdagHla 252
                    ++ +p +++sg +D+      ++l ++++++ + +  + i++agH++
     KKY19240.1 325 KIEVPCFYVSGLKDWGNHQepGSLKKMKDHCTRlVAIKFIEGAGHWL 371
                    88889999999999998876788888888888889999999999986 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   3.8e-14   8.5e-11       4     117 ..      41     159 ..      38     213 .. 0.85
   2 !    4.9   0.0    0.0062        14     183     238 ..     319     375 ..     303     376 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 3.8e-14
  Hydrolase_4   4 kavvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse......gkrghvpsfd..dyvdDlaafvekvkeehpelplfllGhSmGGlially 93 
                  k +++l+HG+ + +    +++  La +G+ v+a D+rG+Gr+         ++ +++f+  ++v+D+  +v+++     ++   l+Gh  G++ a++ 
   KKY19240.1  41 KPLILLLHGFPDLAYSWRHVIPLLASAGYYVVAPDQRGYGRTSgwdtsgFSQVNLQEFSmiRLVTDIVVLVNALG---YRKVTCLVGHDFGAVAAAHC 135
                  7789***************************************99998734444555542278999999998888...555678************** PP

  Hydrolase_4  94 llrypdkvaglilsaPalkikakl 117
                  +  +pd +++l+l++  +k   +l
   KKY19240.1 136 AVSRPDLFEKLVLMSHPFKGTLNL 159
                  ******9*******9988887665 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0062
  Hydrolase_4 183 leeraakitlPllllhGeaDkvvdpeas..relyerlgskdktlklypglyHellnEp 238
                  ++    ki++P++ ++G +D+  ++e+   +++ +++++  + +k ++g+ H l +E+
   KKY19240.1 319 ALLAGRKIEVPCFYVSGLKDWGNHQEPGslKKMKDHCTR-LVAIKFIEGAGHWLPQEQ 375
                  555667999**************9999988999999996.9***********998886 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.6e-06      0.01       3      93 ..      57     147 ..      55     158 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.6e-06
                   --HHHHHHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTT.S--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEE CS
  Peptidase_S9   3 fsselqlladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakeg.yvdserlaitGgSyGGyltgaalnqrpdlFkaav 93 
                    ++++ lla++Gy vv+++ rG g +   +  +g  + + +ef+ +  +++ ++  + +  ++  ++ G+ +G + ++ ++ +rpdlF+ +v
    KKY19240.1  57 WRHVIPLLASAGYYVVAPDQRGYG-RTSGWDTSGFSQVNLQEFSMIRLVTDIVVLVNaLGYRKVTCLVGHDFGAVAAAHCAVSRPDLFEKLV 147
                   568999****************98.8889***************999999999999956666677899********************8665 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   9.7e-06     0.022      18      55 ..      42      79 ..      35     157 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.7e-06
  Chlorophyllase2 18 pvllflhGylllnslYsqlLkhiashgfivvapqlykv 55
                     p++l+lhG+  l + +++++  +as g+ vvap     
       KKY19240.1 42 PLILLLHGFPDLAYSWRHVIPLLASAGYYVVAPDQRGY 79
                     89********999********************54442 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.8e-05      0.04      17     149 ..      34     152 ..      21     304 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.8e-05
                 C.GGTTTEEEEEEE--TTHHCCHHHHHCHHCCCCHCCT.EEEEEECCCSS-TTTTTSBTTSBB.TTEEETTCCCCCCHCHHHHTHHHHHHHHHCSEECC CS
    Esterase  17 dyspgrkypvvylldGltgwdqnfrakelleslaregeiaeviivvvprggessfysdwdlgarfyenategpgaeayetfltqeLlplldanfrtapd 115
                 +y+p+r  p+++ll+G+ +   ++r    +  l ++ +  +v+++   +g +s     wd         t+g  + ++++f   +L+  +    +    
  KKY19240.1  34 GYTPTRLKPLILLLHGFPDLAYSWR---HVIPLLASAGYYVVAPDQRGYGRTS----GWD---------TSGFSQVNLQEFSMIRLVTDIVVLVNALGY 116
                 5677777777777777444444443...3333344444444444444444444....666.........345555555555555554433333333332 PP

                 C..EEEEEETHHHHHHHHHHHCSTTTCCEEEEES-- CS
    Esterase 116 g..ravaGqSmGGlgALilalkhpdrFgsvssfSpi 149
                 +  + ++G+ +G+++A ++a+ +pd+F     +S +
  KKY19240.1 117 RkvTCLVGHDFGAVAAAHCAVSRPDLFEKLVLMSHP 152
                 23499************************9999933 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.1e-05      0.11      47      80 ..      42      75 ..      32     133 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.1e-05
  Chlorophyllase 47 pvvlflhGtllsnkfyskllnhiashGfivvaPq 80
                    p++l+lhG+    +++ +++  +as G+ vvaP 
      KKY19240.1 42 PLILLLHGFPDLAYSWRHVIPLLASAGYYVVAPD 75
                    89*******************************6 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0097        22      52      79 ..      53      90 ..      18     100 .. 0.71
   2 ?    5.1   0.0    0.0067        15     210     242 ..     309     341 ..     227     351 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0097
                   H..........HHHTT-EEEEEE-TTSTTS-S---TTT CS
  Peptidase_S15 52 v..........fvarGYavVvqdvrGtggSeGeftvgd 79
                              +++ GY vV  d rG g   G  t+g+
     KKY19240.1 53 LayswrhviplLASAGYYVVAPDQRGYGRTSGWDTSGF 90
                   05555555566899**************9999776654 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0067
                    SSSHHHHTT-HHHHHCT--S-EEEEEECCSSTT CS
  Peptidase_S15 210 dydafWkdrnlsedadkvkapvllvgGwnDwnv 242
                    + da  ++  +  + +k+++p+++v+G+ Dw+ 
     KKY19240.1 309 QTDAVLRRDTALLAGRKIEVPCFYVSGLKDWGN 341
                    4555555555555669**************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 2520.21
//
Query:       KKY19241.1  [L=1253]
Description: hypothetical protein UCRPC4_g04615 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.51
# Mc/sec: 7329.43
//
Query:       KKY19242.1  [L=313]
Description: putative transaldolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-83  279.8   0.3      3e-83  279.5   0.3    1.0  1  TAL_FSA   Transaldolase/Fructose-6-phosphate aldolase


Domain annotation for each model (and alignments):
>> TAL_FSA  Transaldolase/Fructose-6-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.5   0.3   1.7e-87     3e-83      27     284 ..      26     304 ..      14     307 .. 0.93

  Alignments for each domain:
  == domain 1  score: 279.5 bits;  conditional E-value: 1.7e-87
                 HHHHHH..T...TS.-HHHHHHHHHHH............................H-S-EEEE-S-...-SHHHHHHHHHHHHTT-T.......TEEEE CS
     TAL_FSA  27 Psliekaik...ykalydeaieeikkeg....kkvkeaydkLavedilealdllgadgrvslEVdarlsddteatieeArrlialye.....renvlIK 113
                 + li++a+k   y++l+d+a+e++k +g    +kv++ +d+L ve+++e+l+++  +g+vs+EVdar+s+dt++++e+A ++i+ly+     ++++lIK
  KKY19242.1  26 ANLILAAAKkpeYAKLIDAAVEYGKGHGkdldEKVDATLDRLLVEFGKEILKIV--PGKVSTEVDARFSFDTKKSVEKALHIIELYKelgisKDRILIK 122
                 5688888888999************99999999999******************..******************************************* PP

                 EESSHHHHHHHHHHHHT.T--EEEEEE-SHHHHHHHHHHT-SEEEEBHHHHHTTT............S-HHHHHHHHHHHHHHHT-S-EEEEBS--SHH CS
     TAL_FSA 114 iPateeGikAikeLkke.GinvnvTliFsleqalaaaeagasviSpFvgRiddllkkleekdklkgkddgvalvkeiynyykklgysTkvmaasfrnve 211
                 i++t+eGikA++ L+++ Gin+n+Tl+Fs++qa+aaaea+a +iSpFvgRi+d++k+l +kd   ++d+gv++v++i+nyykk+gy+T vm+asfrnv 
  KKY19242.1 123 IASTWEGIKAAQILQNDyGINCNLTLMFSITQAIAAAEANAFLISPFVGRILDYYKALLKKDFAPEEDPGVKSVQSIFNYYKKYGYKTIVMGASFRNVG 221
                 ***************766*************************************9999999************************************* PP

                 HHHHHHT-SEEEE-HHHHHHHT--HHH.........................................HHHHHHHHHHHHHHH CS
     TAL_FSA 212 eveelagcdtvTippkllealakhgkt......sekleeeeiek....lleklfrlginedavaeelldegikkFakdlekll 284
                 e++elagcd +Ti+p+lle+l +++++      ++++ + +iek     +e+l+r+++neda+a+++l+egi kFa+d+ +l 
  KKY19242.1 222 EITELAGCDYLTISPNLLEDLYNSTDKvpkkldASSASSLDIEKlsyiNDEALYRFDFNEDAMAVSKLREGISKFAADAVTLK 304
                 ***********************999866655323333377777887999****************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2172.00
//
Query:       KKY19243.1  [L=154]
Description: putative superoxide dismutase sod1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-47  160.2   4.8      4e-47  160.0   4.8    1.0  1  Sod_Cu    Copper/zinc superoxide dismutase (SODC)


Domain annotation for each model (and alignments):
>> Sod_Cu  Copper/zinc superoxide dismutase (SODC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0   4.8   2.2e-51     4e-47       5     142 .]      11     150 ..       8     150 .. 0.96

  Alignments for each domain:
  == domain 1  score: 160.0 bits;  conditional E-value: 2.2e-51
                 EEEEEEEEEEEECSTTSTCEEEEEEEECSS-STEEEEEEEESSTTTTTTTGGG-SB-STT-.CSSTTTTTCS-TTEEEEEEESTTSEEEEEEEEESC.B CS
      Sod_Cu   5 kgevsGtvtftqeeskesgsvevtvevkglppggkhgfHiHengdcsagfksagghfnptgkkhgapndeerhaGDLgnievdadgtakleittdklvs 103
                 +++++Gtvtf+q+++  s  +++t++++g +++ + g+H+H++gd ++g++sag+hfnp+gk+hgap+d+erh+GDLgn+++d +g+a+ ++t d+l++
  KKY19243.1  11 DSNIKGTVTFEQASE--SAPTTITWDITGNDSNAERGMHVHQFGDNTNGCTSAGPHFNPFGKTHGAPSDSERHVGDLGNFKTDGQGNASGSVT-DSLIK 106
                 5799********884..5679**********999*********************************************************98.***** PP

                 CSTTTBCTTEEEEEESS---TT.....SCHHHTTSSSEEEEEEE CS
      Sod_Cu 104 lkgensilgralvihagaDdlg.....eskptgnagariacGvI 142
                 l g++s+lgr++v+hag+Ddlg     esk+tgnag+r acGvI
  KKY19243.1 107 LIGQESVLGRTIVVHAGTDDLGktdhpESKKTGNAGGRPACGVI 150
                 *******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1068.15
//
Query:       KKY19244.1  [L=330]
Description: putative isochorismatase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-21   76.5   0.0    2.3e-18   67.0   0.0    2.3  1  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   1.3e-22   2.3e-18       1     158 [.      62     304 ..      62     312 .. 0.89

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 1.3e-22
  Isochorismatase   1 talvviDmqndfv..eegvkeseeisavven...inkllkaarkagipviftrdvhe..................................... 52 
                      talv+iDmqn f+  +    +s++ ++  ++   in ++ aark+gi++i+ ++                                        
       KKY19244.1  62 TALVIIDMQNFFIspA--LGRSKDGNGWKAQeklINYAIPAARKQGIRIIWLNWGLTeeeidamppatlrafgfetvpqdsssfdipdkkiaid 153
                      8************553..444444443333322489999****************999************************************ PP

  Isochorismatase  53 ...................................leevkgdlderkaaphfkpgttgaelvpelaple........gdvvvdKtrfsaf..ag 101
                                                          +    d +   + + + +gt+ a+l pel+ +          dv ++K+r+s+   ++
       KKY19244.1 154 ehginqgatelhaalqaqkedgtrariyrglgrdmGKVKLEDGSLVDGGKLLMRGTWNAALTPELEAQRqeglesspPDVWIHKNRMSGLwgEK 247
                      *******************************9987666667777778889999*************99877777777899999*******8889 PP

  Isochorismatase 102 tdldeiLkelgiktivlaGiatdvCVeatardaldlGyevvvvsDAvaalspelhda 158
                      t   ++L+++gikt++++G++td CV  +  da+ +G +++++sD+ ++ sp+  ++
       KKY19244.1 248 TMCTDFLEKEGIKTLIFSGVNTDQCVGGSLQDAFTKGWDCILLSDGAGTTSPDSSQQ 304
                      999**************************************************9766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 2127.94
//
Query:       KKY19245.1  [L=1303]
Description: putative transcription factor (snd1 p100) [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-69  231.0   0.1    4.5e-25   88.2   0.0    6.0  5  SNase      Staphylococcal nuclease homologue
    2.2e-24   85.8   0.0    8.7e-24   83.9   0.0    2.0  2  TUDOR      Tudor domain
      1e-22   80.5   0.0    1.8e-22   79.7   0.0    1.4  1  CRAL_TRIO  CRAL/TRIO domain
    3.1e-05   23.4   0.1     0.0023   17.3   0.0    2.5  2  SMN        Survival motor neuron protein (SMN)
     0.0036   17.7   0.3      0.013   15.9   0.3    2.0  1  Agenet     Agenet domain


Domain annotation for each model (and alignments):
>> SNase  Staphylococcal nuclease homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0024       8.7       3     107 ..      30     138 ..      28     139 .. 0.69
   2 !   44.2   0.0   6.3e-15   2.2e-11       5     105 ..     197     301 ..     193     303 .. 0.94
   3 !   71.7   0.0   1.7e-23     6e-20       1     107 [.     339     449 ..     339     450 .. 0.93
   4 !   88.2   0.0   1.3e-28   4.5e-25       2     108 .]     507     612 ..     506     612 .. 0.95
   5 !   12.0   0.0   6.1e-05      0.22      20     102 ..     774     863 ..     753     865 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0024
                 EETTEE-STSSBTTTTTSTTHHHHHHHHHHHHHHCSSEEEEE-SSBSTTSEEEEEEEET.TEEHHHHHHHTTSSEE--.-BTT.....STTTHHHHHHH CS
       SNase   3 rLvgidaPetakpkktvqpfgkeAkeflkklvlqkkvvvleldkkkDkygrllayvyln.kknineeLvkeGlArvye.vyek.....neekkkellka 94 
                 +L+ + aP+ ++ +   ++f+ +++e+l++l+++k  + + l        r  +++ +  + ++  + v eG  +v e + +k     +  + +++  +
  KKY19245.1  30 SLAYVSAPRLRREGD--EAFAFQSREYLRELLVGKVIQFETLYA-IPTTKREYGRLRIPnGPEFPDQSVSEGWVKVREdAGRKeeseeAAAYLEKITGL 125
                 6889999**997777..99**************55555554444.566777777777766777777777777777666432222111133455667779 PP

                 HHHHHHTT-GGGC CS
       SNase  95 eeeAkkkrkglWs 107
                 e +Ak + kg W 
  KKY19245.1 126 ESQAKGASKGVWT 138
                 99*********96 PP

  == domain 2  score: 44.2 bits;  conditional E-value: 6.3e-15
                 TTEE-STSSBTTT.....TTSTTHHHHHHHHHHHHHHCSSEEEEE-SSBSTTSEEEEEEEETTEEHHHHHHHTTSSEE---BTT.STTTHHHHHHHHHH CS
       SNase   5 vgidaPetakpkk.....tvqpfgkeAkeflkklvlqkkvvvleldkkkDkygrllayvylnkknineeLvkeGlArvyevyek.neekkkellkaeee 97 
                  gi+aP t+++       +++p+g eA++f+++++lq+k vv+ l+     +++l++ v   + ni+  L+++GlAr + ++ +    +  +l++ e++
  KKY19245.1 197 GGIRAPSTKRTTPdgketPAEPYGTEAQQFVEERLLQRKCVVQLLGV--TPQNQLIGAVLHPRGNIASFLLEAGLARCHDAHVTlLGSEMGQLRQSEKA 293
                 69*******988899999*****************************..9999***************************8887799999********* PP

                 HHHTT-GG CS
       SNase  98 Akkkrkgl 105
                 Ak +rkg+
  KKY19245.1 294 AKDARKGI 301
                 *******8 PP

  == domain 3  score: 71.7 bits;  conditional E-value: 1.7e-23
                 EEEETTEE-STSSBTTTTTSTTHHHHHHHHHHHHHHCSSEEEEE-S...SBSTTSEEEEEEEETTEEHHHHHHHTTSSEE---BTT...STTTHHHHHH CS
       SNase   1 kvrLvgidaPetakpkktvqpfgkeAkeflkklvlqkkvvvleldk...kkDkygrllayvylnkknineeLvkeGlArvyevyek...neekkkellk 93 
                 +++L++i+ P+ ++pk+   pf+ +Akefl+k++++k+v+v +++k   ++++++r +a++ ln+kn++++ +++G+A+v++ +++   ++ ++++ll 
  KKY19245.1 339 RISLSSIRQPKPSDPKQ--SPFAADAKEFLRKKLIGKHVKVSVDGKkpaSEGYEEREVATITLNEKNVALQVIEAGYASVIRHRKDdddRSPDYDALLL 435
                 699**********9988..*************************9999999*****************************9944443578899****** PP

                 HHHHHHHTT-GGGC CS
       SNase  94 aeeeAkkkrkglWs 107
                 aee+A+k+ kg+Ws
  KKY19245.1 436 AEEAAQKDGKGMWS 449
                 *************9 PP

  == domain 4  score: 88.2 bits;  conditional E-value: 1.3e-28
                 EEETTEE-STSSBTTT.TTSTTHHHHHHHHHHHHHHCSSEEEEE-SSBSTTSEEEEEEEETTEEHHHHHHHTTSSEE---BTTSTTTHHHHHHHHHHHH CS
       SNase   2 vrLvgidaPetakpkk.tvqpfgkeAkeflkklvlqkkvvvleldkkkDkygrllayvylnkknineeLvkeGlArvyevyekneekkkellkaeeeAk 99 
                 + L+gi+aP++a+++  ++ pfg+eA++f+++++lq++v++++++   Dk g +++++y+ ++n+++ Lv+eGlA v+++  +++ + +el +ae++Ak
  KKY19245.1 507 FVLSGIRAPRSARKPGdAADPFGQEAHNFANRRCLQRDVEIDVETM--DKVGGFIGTLYVGRENFAKSLVEEGLAEVHAYSAEQSGHSNELFAAEKKAK 603
                 789*******996655599*************************99..****************************9998888**************** PP

                 HTT-GGGCT CS
       SNase 100 kkrkglWse 108
                 + rkglW++
  KKY19245.1 604 ESRKGLWHD 612
                 *******86 PP

  == domain 5  score: 12.0 bits;  conditional E-value: 6.1e-05
                 STTHHHHHHHHHHHHHHCSSEEEEE-SSBSTTSEEEEEEEET.....TEEHHHHHHHTTSSEE--...-BTT.STTTHHHHHHHHHHHHHTT CS
       SNase  20 qpfgkeAkeflkklvlqkkvvvleldkkkDkygrllayvyln.....kknineeLvkeGlArvye...vyek.neekkkellkaeeeAkkkr 102
                 +++ k+A +f  +l+ +++ v +++ +    +g l  ++++      +++in++ ++eGlA+v +   ++e+ + ++   l+k+e +Ak+ r
  KKY19245.1 774 ANYLKDAVAFIGELTEGRELVANVDYI--STEGTLTVTLMYPdaptiDESINAQVIEEGLAMVPKklkAWERaAGDTLVSLKKIETQAKQGR 863
                 679999999999999999999999888..88888888888889*******************977322344446677778899999999877 PP

>> TUDOR  Tudor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   2.4e-27   8.7e-24       4     120 ..     642     765 ..     639     766 .. 0.92
   2 ?   -3.0   0.0         2   7.1e+03      58      73 ..    1131    1146 ..    1126    1161 .. 0.75

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 2.4e-27
                 CGEEEEEEEEEEETTEEEE.EEGGHHHHHHHHHHHHHHHHTSSCC..TCSSS--TT-EEEEEETTTTEEEEEEE.EEECTTTEEEEEETTTSBEEEEEG CS
       TUDOR   4 dktievvvsaiespskfyi.qpkeqskkleklteelqeyyaskkk..aellapavgegcvavfsedgkwyRAki.teslddqkveVlfiDyGntetvpv 98 
                 +++ +v+v+++ +++k    q ++ +++l++l++  ++++ +k++    + +p+ g+ ++a+f+ d+ wyRAk+ ++++d++kveV++iDyGn+et+p+
  KKY19245.1 642 KDYRDVIVTHVGDDGKLKLqQVGPGTAALSELMNAFKSFHINKANeqPLPGPPKAGDFVAAKFTADNDWYRAKVrRVDRDAKKVEVVYIDYGNSETLPW 740
                 7899***************999********************99986666789********************************************** PP

                 GGEEE--.GGGCS..S-BSSEEEEE CS
       TUDOR  99 sdlrelp.selee..lppqaikcrL 120
                 s+lr+l   ++++  l+ qa+   L
  KKY19245.1 741 SRLRPLTqAQFSNqkLKGQAVDGAL 765
                 *******999988778888877665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2
                  EEEEEETTTTEEEEEE CS
       TUDOR   58 gcvavfsedgkwyRAk 73  
                  + ++++++   wyR+ 
  KKY19245.1 1131 DEIVRAKVGHDWYRGP 1146
                  56889999999***85 PP

>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0   5.1e-26   1.8e-22       8     159 .]     940    1119 ..     934    1119 .. 0.87

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 5.1e-26
   CRAL_TRIO    8 kvgihgrDkegrpvlylrlgrfdpkklsle...........................elvralvlvlerllkelee..dgqvegvtvviDlkglsls 75  
                  ++   +rD++g p+++ ++++ d k++++                             + ++l+lvl  +  +  +  d ++++ t ++D+ g++  
  KKY19245.1  940 PQWTGHRDRRGLPLYVYQIRHLDHKTVNHYskettewkknskwakapasakllplyaLYENMLSLVLPLCSSLDRPvmDVPITQGTNIVDVAGVG-I 1035
                  5566789******************666445678999*************99999994445555555554443333566****************.6 PP

   CRAL_TRIO   76 kmlwkpisllkkilkilqdnyperlgkilivnaPklfkfafklvkpfldektreKikfvspsnteatlekyidpeqlpkelGGt 159 
                  k  w+    +++ +++  +++pe+l +i+i+ aP +f +++  +k + d++t +Ki+++s++++ +tleky++ +++pk +GGt
  KKY19245.1 1036 KTFWNLKTHMQEASQMATAHFPETLDRIFIIGAPYFFPTVWGWIKRWFDPNTVSKIFVLSQHDMVSTLEKYFELSSIPKAYGGT 1119
                  677788999**************************************************************************7 PP

>> SMN  Survival motor neuron protein (SMN)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   6.3e-07    0.0023      57     137 ..     681     763 ..     668     768 .. 0.84
   2 ?    3.0   0.2     0.014        51      82     142 ..    1221    1282 ..    1192    1290 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 6.3e-07
         SMN  57 srkkcnaaplk.kwkvgdscnavwsedgnvypatiasidakkgtcvvvytgygneeeqnladllteasd.ededalkeanvne 137
                   +k+n  pl    k gd   a ++ d + y a +  +d++     vvy +ygn+e    + l++ ++   ++++lk++ v++
  KKY19245.1 681 HINKANEQPLPgPPKAGDFVAAKFTADNDWYRAKVRRVDRDAKKVEVVYIDYGNSETLPWSRLRPLTQAqFSNQKLKGQAVDG 763
                 5678888887524699***********************************************98654438999999988765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.014
         SMN   82 dgnvypati.asidakkgtcvvvytgygneeeqnladllteasdededalkeanvnetesst 142 
                  +gnv ++   +s+++            g  +e n a l t+  d  e+alk+++++++e+s 
  KKY19245.1 1221 NGNVDATGAaSSVENTGAVETAPVVVNGTANESNAAKLPTNIVDATEEALKKQEMKNEEQSN 1282
                  677765444044444333223333446788899************************99985 PP

>> Agenet  Agenet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.3   3.7e-06     0.013      16      59 ..     709     746 ..     705     748 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.7e-06
      Agenet  16 aWfrAtilkv.kegd..kylVeYddlddddgskpleEwvdasdiRPl 59 
                  W+rA++ +v +  d  k++V Y d      ++   E+ ++s++RPl
  KKY19245.1 709 DWYRAKVRRVdR--DakKVEVVYID-----YGNS--ETLPWSRLRPL 746
                 5*********54..44599999999.....4444..79********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.90u 0.27s 00:00:01.17 Elapsed: 00:00:00.46
# Mc/sec: 8502.87
//
Query:       KKY19246.1  [L=626]
Description: putative sugar transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-76  256.6  16.3    1.8e-55  188.7   5.2    2.1  2  Sugar_tr  Sugar (and other) transporter
    1.3e-10   40.7  33.5    7.1e-08   31.7  19.6    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.7   5.2     2e-59   1.8e-55      43     307 ..     166     447 ..     119     454 .. 0.81
   2 !   73.4   4.1   1.8e-24   1.6e-20     347     452 .]     460     565 ..     447     565 .. 0.92

  Alignments for each domain:
  == domain 1  score: 188.7 bits;  conditional E-value: 2e-59
                 H.........HHHHH.HHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SC CS
    Sugar_tr  43 e......ssvlsgli.vsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkk 134
                         +  +g+i +s ++++a++ + ++ ++ +++GR+ ++ iaa++++i+ + +a+++   ++  l+++R+l+Gig+Gl  v+vP++ +EiAp++
  KKY19246.1 166 PnphydrNQWIVGFInASPYIAIAFFAGWISDPVNNYLGRRGTIFIAAIFSLIAPIGSACTQ---HWGELVACRILLGIGMGLKEVTVPVFSAEIAPTN 261
                 04555443333343315567889999999999999***************************...********************************** PP

                 CHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHC....HHHHHHHHHHHH CS
    Sugar_tr 135 lRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekgkeeeakevlaklrge....edadrelaeekd 229
                 +Rg lv+ +q++++fGil++   +l+++++++   wr+ lg++++pa+ l+++++f+PESPr+l++kg++ +a e l +lr++    + ++ ++++  +
  KKY19246.1 262 VRGGLVMSWQVWTAFGILLGVSANLVVKDVGD-IAWRLQLGSAFIPAVPLVLGIWFCPESPRWLMKKGRYRKAYEALCRLRKTpmqaARDTYYIQAQLQ 359
                 ********************************.9**********************************************9998665555555555555 PP

                 HHHHHHH..........HTTHHHHSH......HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HHHHHHHHHHHHHHHHHH CS
    Sugar_tr 230 sleaeqeee.....kaswkellsskt...vrqrlligvvlqifqqltGinaimyysptifenlglsks..llvtiivgvvnfvatfva 307
                 + ea   e+      ++  ++++ +t   vr+++     ++i+qq++Gin+i +ys+tif n+g s    ll++ ++g+vn+++   a
  KKY19246.1 360 AEEALIAESgvathGNFFTRFVELFTvprVRRATQASGIVMIAQQMCGINIIAFYSSTIFVNAGASVNtaLLASWGFGIVNWAFAWPA 447
                 5555555559888866666666666677799999999999************************999889************997666 PP

  == domain 2  score: 73.4 bits;  conditional E-value: 1.8e-24
                 ..CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--C CS
    Sugar_tr 347 aasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtl 445
                 a  ++++ fi+lf a++++g gpvp+ +++E+fp+s R ++++ ava+n+++  + sl+   i+   g  ++f ++agl++l+++++f+ +petk r+l
  KKY19246.1 460 AHLGCITLFIYLFDAFYSPGEGPVPFTYSAEVFPLSHREVGMSWAVATNNFWAAILSLTLFRILAVFGSVGTFGFYAGLNALAFVMIFLWLPETKQRSL 558
                 45678999*************************************************998888888888****************************** PP

                 CCCGGGT CS
    Sugar_tr 446 eeieelf 452
                 ee++++f
  KKY19246.1 559 EELDYVF 565
                 ****997 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7  19.6     8e-12   7.1e-08      34     259 ..     173     442 ..     129     472 .. 0.75
   2 !    7.7  15.1   0.00016       1.4      67     178 ..     436     556 ..     433     585 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 8e-12
       MFS_1  34 igllltl.yalgaavaslplGrlsd....rfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigll 126
                  ++++++  a  +++ ++++G++sd     +Grr ++++++++++++  +++ ++++w  l+++r+l G+g+g+   ++ ++ a+++p + rg  +  +
  KKY19246.1 173 NQWIVGFiNASPYIAIAFFAGWISDpvnnYLGRRGTIFIAAIFSLIA-PIGSACTQHWgELVACRILLGIGMGLKEVTVPVFSAEIAPTNVRGGLVMSW 270
                 56755543777899999999*****888557****999999999999.77774499999**************************************** PP

       MFS_1 127 sagfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrkspkeee.................................. 188
                 ++ +++G++lg + + l++  +g   Wr+    + i ++ + vl++++ pe+p+   +k   ++                                   
  KKY19246.1 271 QVWTAFGILLG-VSANLVVKDVGdiaWRLQLGSAFIPAVPL-VLGIWFCPESPRWLMKKGRYRKAyealcrlrktpmqaardtyyiqaqlqaeealiae 367
                 ***********.777888888888**998877777777776.55557777777777777777766*******************999986666655555 PP

       MFS_1 189 ..kgtgpaplvp......awkallkdpvlw.....illialllfffgfsglltllplylqevlglsglllaglllallalvgai 259
                   +        +       + +l++ p +      + +++++  ++g++++ +++ ++     g s + +a+l++  +++v+ +
  KKY19246.1 368 sgVA-------ThgnfftRFVELFTVPRVRratqaSGIVMIAQQMCGINIIAFYSSTI-FVNAGAS-VNTALLASWGFGIVNWA 442
                 5433.......14444445777888887734456789999999999999999999985.7778888.44444334444444433 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00016
       MFS_1  67 lglllfalglllll.fa........sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGa.ilgpllggllasslgWravf 154
                 +g++ +a++ + ++ f+        ++l  + l+  ++ ++ + +  p+  ++ a++fp ++r  +++++ a++++ a il   l  +la  +g  ++f
  KKY19246.1 436 FGIVNWAFA-WPAAgFSfyipgtqgAHLGcITLFIYLFDAFYSPGEGPVPFTYSAEVFPLSHREVGMSWAVATNNFWAaILSLTLFRILA-VFGSVGTF 532
                 667777777.5555542333445667788888888889999999999***************************9988466688888888.9999**** PP

       MFS_1 155 yilaivsllafvlfllllpeeppe 178
                  + a++ +lafv+++l+lpe++ +
  KKY19246.1 533 GFYAGLNALAFVMIFLWLPETKQR 556
                 ************966666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.48
# Mc/sec: 3892.08
//
Query:       KKY19247.1  [L=1254]
Description: putative ankyrin repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-29  101.5   0.1      1e-28  100.3   0.1    1.7  1  AAA_12         AAA domain
      3e-25   88.6   0.6    1.9e-10   41.2   0.1    3.3  3  Ank_2          Ankyrin repeats (3 copies)
    4.9e-20   71.6   0.0    2.4e-10   40.7   0.0    3.9  3  Ank_4          Ankyrin repeats (many copies)
    7.8e-15   55.4   0.0    1.7e-14   54.3   0.0    1.6  1  AAA_11         AAA domain
    1.2e-14   53.0   0.0    5.6e-05   23.2   0.0    5.2  4  Ank_3          Ankyrin repeat
    2.7e-10   40.2   0.3     0.0031   17.9   0.0    4.6  4  Ank            Ankyrin repeat
    6.7e-07   29.2   0.0    0.00052   19.8   0.0    2.4  2  AAA_30         AAA domain
      9e-07   29.1   0.3      0.053   13.9   0.1    3.9  4  Ank_5          Ankyrin repeats (many copies)
    5.7e-06   25.7   0.0      0.018   14.3   0.0    2.3  2  PIF1           PIF1-like helicase
    6.9e-05   22.6   0.0    0.00015   21.5   0.0    1.6  1  UvrD_C_2       UvrD-like helicase C-terminal domain
     0.0011   18.6   0.0     0.0032   17.0   0.0    1.8  2  UvrD-helicase  UvrD/REP helicase N-terminal domain
     0.0013   18.0   0.7       0.31   10.2   0.0    3.1  4  DUF2075        Uncharacterized conserved protein (DUF2075)
     0.0019   18.5   0.0     0.0047   17.3   0.0    1.8  1  AAA_19         AAA domain
  ------ inclusion threshold ------
       0.04   14.3   0.0      0.093   13.1   0.0    1.6  1  AAA_16         AAA ATPase domain
      0.043   13.3   0.1      0.084   12.3   0.1    1.5  1  PhoH           PhoH-like protein
      0.066   13.0   0.0        0.9    9.3   0.0    2.4  2  DEAD           DEAD/DEAH box helicase
       0.08   12.8   0.0       0.19   11.6   0.0    1.6  1  Helicase_RecD  Helicase
       0.12   11.9   0.0       0.29   10.7   0.0    1.6  1  AAA_25         AAA domain


Domain annotation for each model (and alignments):
>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   0.1     1e-31     1e-28       4     197 ..     778     972 ..     775     974 .. 0.89

  Alignments for each domain:
  == domain 1  score: 100.3 bits;  conditional E-value: 1e-31
      AAA_12   4 SlferllkkekekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkrele.......aqealeepleplvfidvekseeekekkeksyiNeeEaelv 95 
                  l+ rl+ ++  ++++L+tqYRm p+Isr++++  Y++kL+d++sv  ++ +        +++   ++++++++d+++ +++k+    s +Ne+ ++  
  KKY19247.1 778 PLMSRLIGAG-FSYHVLTTQYRMVPQISRIVNNVAYQSKLQDHSSVLVQNRPlaariqeFNKNKFGKKTNVILLDIKSGTTTKTPA-GSRYNEAYIQNG 874
                 6899999999.99*******************************77666666668877667777778888*******999999986.************ PP

      AAA_12  96 vklvekllkkgseeerkkigvitpYraqvellkkklkekeee.ksekeievntvdgfQGrekdviilslVRsnekkeigflkderrlNValTRAkskli 193
                 + l+++l+++++++   +i+ +++Y+aq++l + +l++  ++ k++ +i+v+t+d++ G e+d+++l +     +++ gf+++ +r NVal+RA++ l+
  KKY19247.1 875 ILLLKDLVDQFPNA---SIAYLSFYQAQMHLARTALRNLCKDgKEYFNISVDTIDRVHGCEWDIVVLDFPLI--ENSAGFMTQLNRCNVALSRARNGLY 968
                 *************9...9*******************87655144566*******************99876..899********************99 PP

      AAA_12 194 ivGn 197
                 +  n
  KKY19247.1 969 LQTN 972
                 8665 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   2.7e-10   2.7e-07       6      81 ..    1063    1146 ..    1059    1148 .. 0.77
   2 !   41.2   0.1   1.9e-13   1.9e-10      18      81 ..    1104    1181 ..    1097    1183 .. 0.82
   3 !   31.7   0.1   1.7e-10   1.7e-07      26      75 ..    1153    1210 ..    1146    1219 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 2.7e-10
       Ank_2    6 kngnlelvklLl.egadpn..k...ngktaLhyAakngnlei...vklLleh.adndgrtpLhyAarsghleivklLlekgadinl 81  
                  k++++ +v++Ll +g+d++  +   + +t+L+++ ++  ++    + ++  + ++  grt+L+ A++ g+ e+vk+L+ kgad+n+
  KKY19247.1 1063 KSNATVIVQFLLdQGVDVDrpSsghCSQTPLQASLQHKFIDRgakINAM--ApTRFMGRTALQEAVERGNMELVKYLISKGADVNA 1146
                  45555699*********9987246799*****99998643323223333..245678*********************99****97 PP

  == domain 2  score: 41.2 bits;  conditional E-value: 1.9e-13
       Ank_2   18 egadpn..k....ngktaLhyAakngnleivklLleh...ad.....ndgrtpLhyAarsghleivklLlekgadinl 81  
                   ga++n        g+taL+ A+++gn e+vk+L+++   ++     + g t+L++Aa +g+l++++lLl +gadi +
  KKY19247.1 1104 RGAKINamAptrfMGRTALQEAVERGNMELVKYLISKgadVNapavpDGGVTALQAAAINGYLRLAQLLLLHGADIGA 1181
                  566666551356789********************9885644777778899*******************99***976 PP

  == domain 3  score: 31.7 bits;  conditional E-value: 1.7e-10
       Ank_2   26 gktaLhyAakngnleivklLleh.....ad...ndgrtpLhyAarsghleivklLlek 75  
                  g taL++Aa+ng+l +++lLl h     a+   ++grt+   Aa++g+ ++vk+Ll++
  KKY19247.1 1153 GVTALQAAAINGYLRLAQLLLLHgadigAEaspKYGRTAVNGAAEHGRVDMVKYLLDN 1210
                  78*******************99956553377999*********************76 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00081      0.81      16      49 ..    1069    1103 ..    1062    1104 .. 0.86
   2 !   40.7   0.0   2.4e-13   2.4e-10       1      55 []    1118    1173 ..    1118    1173 .. 0.97
   3 !   30.8   0.0   3.2e-10   3.2e-07       4      55 .]    1156    1208 ..    1156    1208 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00081
       Ank_4   16 lvrlLlekgadinaqdn.rsGetalhiAakrgnve 49  
                  +v++Ll++g+d+++ ++  + +t+l+  +++ +++
  KKY19247.1 1069 IVQFLLDQGVDVDRPSSgHCSQTPLQASLQHKFID 1103
                  599***********94458899*******998876 PP

  == domain 2  score: 40.7 bits;  conditional E-value: 2.4e-13
       Ank_4    1 eltaLhyaaisgrlelvrlLlekgadinaq.dnrsGetalhiAakrgnveilklLl 55  
                  ++taL  a++ g++elv++L++kgad+na   ++ G tal+ Aa +g+++ ++lLl
  KKY19247.1 1118 GRTALQEAVERGNMELVKYLISKGADVNAPaVPDGGVTALQAAAINGYLRLAQLLL 1173
                  589***************************98999********************8 PP

  == domain 3  score: 30.8 bits;  conditional E-value: 3.2e-10
       Ank_4    4 aLhyaaisgrlelvrlLlekgadinaq.dnrsGetalhiAakrgnveilklLl 55  
                  aL +aai g l+l++lLl +gadi a  ++++G+ta+  Aa +g+v+++k+Ll
  KKY19247.1 1156 ALQAAAINGYLRLAQLLLLHGADIGAEaSPKYGRTAVNGAAEHGRVDMVKYLL 1208
                  5789999****************766668***********************8 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   1.7e-17   1.7e-14       2     259 ..     482     765 ..     481     767 .. 0.81

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 1.7e-17
      AAA_11   2 lndsqreaiksalsese.itliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgneeer 99 
                 ln sq++ ++   + s+   liqGPPGtgKT  + +++              +++r L+++ +N  v++l +rl  + ++++  +y +++  +  e+  
  KKY19247.1 482 LNPSQEQVVRASQKVSGgTLLIQGPPGTGKTYLLGQMMIPF---------MVHQKRALITSATNEGVNDLSLRLHAQCIEQNDHSYVIRFHSIHTEK-- 569
                 79999999977766665578***********9999988888.........6899**********************899999999988888888888.. PP

      AAA_11 100 iseavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeek.....................................eklkkskeksks 161
                  + +  + +l +  e +++   +++l++e +++le+l+++   +e  ++                                       k + ++ ks  
  KKY19247.1 570 -QLSRLPATLARPPEPNSRPPINIALTEEEDEALEQLEAAKLLQEMHDAFfktkfegvhdhrvqnlelsvghrmlqrtgivptngssPKADPERYKSFI 667
                 .44555555555555555555466666666666666665554444443336677778888889999999999999999999*99999778888888888 PP

      AAA_11 162 kleqerrklkkerkelskeleeaeesleeevldeaeivltTlsgagsklleklakkfdvviIDEAaqavEpstliPl..rlgakkvvLvGDpkQLpatv 258
                  l ++ r  +k  +e  + ++ + + ++++vl +a+ v+tT s + s+++ ++  +  +++ DEA++ vE +t i++   +g+  +++vGD kQ  ++v
  KKY19247.1 668 GLFHQYRYDEKFDSETLTAFTPFANDVMRDVLYNASAVVTTPSLSISAAMVNAI-QPHILVFDEACRQVESET-IAIkgTYGSIPTIMVGDFKQTGPVV 764
                 88888888888888899999*********************************8.*****************9.56745777799*********99998 PP

      AAA_11 259 i 259
                  
  KKY19247.1 765 A 765
                 5 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.092        92      12      30 ..    1064    1081 ..    1060    1082 .. 0.80
   2 !   23.2   0.0   5.6e-08   5.6e-05       2      31 .]    1118    1146 ..    1117    1146 .. 0.96
   3 !    8.3   0.1     0.004       3.9       2      30 ..    1153    1180 ..    1152    1181 .. 0.92
   4 !   10.5   0.0   0.00077      0.77       1      28 [.    1187    1214 ..    1187    1216 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.092
       Ank_3   12 sgnleivkfLlenkgadvn 30  
                  s+ + iv+fLl+  g+dv+
  KKY19247.1 1064 SNATVIVQFLLD-QGVDVD 1081
                  555568******.9***97 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 5.6e-08
       Ank_3    2 GetpLhlAarsgnleivkfLlenkgadvna 31  
                  G+t+L +A++ gn e+vk+L+  kgadvna
  KKY19247.1 1118 GRTALQEAVERGNMELVKYLIS-KGADVNA 1146
                  9*********************.9****96 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.004
       Ank_3    2 GetpLhlAarsgnleivkfLlenkgadvn 30  
                  G t+L  Aa +g l ++++Ll  +gad+ 
  KKY19247.1 1153 GVTALQAAAINGYLRLAQLLLL-HGADIG 1180
                  779*******************.9***95 PP

  == domain 4  score: 10.5 bits;  conditional E-value: 0.00077
       Ank_3    1 nGetpLhlAarsgnleivkfLlenkgad 28  
                  +G+t+   Aa++g++++vk+Ll+n+  d
  KKY19247.1 1187 YGRTAVNGAAEHGRVDMVKYLLDNYQGD 1214
                  57888888***************98766 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       1.1   1.1e+03      17      28 ..    1069    1081 ..    1060    1084 .. 0.81
   2 !   17.9   0.0   3.1e-06    0.0031       1      29 [.    1117    1146 ..    1117    1148 .. 0.95
   3 !   14.6   0.4   3.3e-05     0.033       2      28 ..    1153    1180 ..    1152    1182 .. 0.91
   4 ?   -0.4   0.0       1.9   1.9e+03       9      23 ..    1195    1210 ..    1187    1218 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1.1
                  HHHHHH.TTTSTT CS
         Ank   17 iiklLL.hGAnln 28  
                  i+++LL +G +++
  KKY19247.1 1069 IVQFLLdQGVDVD 1081
                  99****88*9987 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 3.1e-06
                  TSBBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank    1 dGnTPLHlAatngkkriiklLL.hGAnlna 29  
                  +G+T+L  A+ +g+ + +k+L+ +GA++na
  KKY19247.1 1117 MGRTALQEAVERGNMELVKYLIsKGADVNA 1146
                  69********************88*****9 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 3.3e-05
                  SBBHHHHHHHHTTHHHHHHHH.TTTSTT CS
         Ank    2 GnTPLHlAatngkkriiklLL.hGAnln 28  
                  G T+L  Aa ng +r ++lLL hGA++ 
  KKY19247.1 1153 GVTALQAAAINGYLRLAQLLLlHGADIG 1180
                  99****9998999*****9999****85 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 1.9
                  HHHHTTHHHHHHHH.T CS
         Ank    9 AatngkkriiklLL.h 23  
                  Aa  g ++++k+LL +
  KKY19247.1 1195 AAEHGRVDMVKYLLdN 1210
                  67778899*****952 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   5.3e-07   0.00052       2      57 ..     482     537 ..     481     574 .. 0.78
   2 !    6.9   0.0    0.0048       4.7      90     157 ..     724     799 ..     680     823 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5.3e-07
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgk 57 
                 ln++Q+++v+a  + +  + +++Gp+GtGKt++l+++   +  +++r ++ + t++
  KKY19247.1 482 LNPSQEQVVRASQKVSGGTLLIQGPPGTGKTYLLGQMMIPFMVHQKRALITSATNE 537
                 899*********999999****************9985544444444444444444 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0048
      AAA_30  90 tllivDEagmvdtkqlaallkaaekagakvilvGDerQlasVea..Ggvlrdlvea........agigtaeLtevvRq 157
                 ++l+ DEa     +++ a+       ++  i+vGD +Q ++V a  G++++ +++         ag+  + Lt+ +R+
  KKY19247.1 724 HILVFDEACRQVESETIAIKGTYG--SIPTIMVGDFKQTGPVVAevGHIFENMMKVplmsrligAGFSYHVLTTQYRM 799
                 566666665554444444433333..37789***********8888*******9767777777777777777777777 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       3.8   3.7e+03      25      43 ..    1063    1081 ..    1062    1087 .. 0.79
   2 ?    3.1   0.0      0.12   1.2e+02      17      44 ..    1119    1146 ..    1114    1149 .. 0.87
   3 !   13.9   0.1   5.3e-05     0.053       1      44 [.    1137    1181 ..    1137    1184 .. 0.93
   4 !    9.9   0.0   0.00091      0.91      14      41 ..    1186    1214 ..    1181    1228 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.8
       Ank_5   25 kygaadvvrlLlargadln 43  
                  k +a  +v++Ll+ g+d +
  KKY19247.1 1063 KSNATVIVQFLLDQGVDVD 1081
                  56888999***98888865 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.12
       Ank_5   17 ntpLhvAakygaadvvrlLlargadlnl 44  
                   t+L  A+++g+ ++v++L+  gad n+
  KKY19247.1 1119 RTALQEAVERGNMELVKYLISKGADVNA 1146
                  5777789*************99999986 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 5.3e-05
       Ank_5    1 Llehg.padvnrldgggntpLhvAakygaadvvrlLlargadlnl 44  
                  L+++g +++  +   gg+t+L  Aa +g++++++lLl +gad+++
  KKY19247.1 1137 LISKGaDVNAPAVPDGGVTALQAAAINGYLRLAQLLLLHGADIGA 1181
                  78889899999999****************************975 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.00091
       Ank_5   14 gggntpLhvAakygaadvvrlLl.argad 41  
                  ++g t+ + Aa++g+ d+v++Ll +++ d
  KKY19247.1 1186 KYGRTAVNGAAEHGRVDMVKYLLdNYQGD 1214
                  567788888**************555444 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.8e-05     0.018       6      58 ..     486     534 ..     481     549 .. 0.74
   2 !    9.1   0.0   0.00066      0.66     122     159 ..     728     766 ..     714     823 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.8e-05
                 HHHHHHHH......HCTS-EEEEESTTSSCHHHHHHHHHHCHCTCCCEEEEES CS
        PIF1   6 QkkvfdaiieavlnekgklfFvtGsgGtgKtflwkallkklrsegkivlavAs 58 
                 Q+    +++ a ++ +g+++ ++G  GtgKt+l+ +++     ++k +l +  
  KKY19247.1 486 QE----QVVRASQKVSGGTLLIQGPPGTGKTYLLGQMMIPFMVHQKRALITSA 534
                 44....556666999*******************9988766666666665544 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00066
                 HHHHHHHHCT-....-SCCCC-EEEEE--TTS-----SS CS
        PIF1 122 ldrtlrdilkeke.idkpFGGktvvlgGDfrQilPviek 159
                  d+  r++ +e+  i+  +G +  ++ GDf+Q  Pv+ +
  KKY19247.1 728 FDEACRQVESETIaIKGTYGSIPTIMVGDFKQTGPVVAE 766
                 58889999998777999*******************965 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.5e-07   0.00015       4      51 ..     922     969 ..     919     970 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.5e-07
    UvrD_C_2   4 altihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTRAreklil 51 
                 ++ti ++ G e+++V+++ p   ++ +++ + +   +a++RAr  l+l
  KKY19247.1 922 VDTIDRVHGCEWDIVVLDFPLIENSAGFMTQLNRCNVALSRARNGLYL 969
                 89*******************************************997 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.2e-06    0.0032       2      76 ..     483     557 ..     482     620 .. 0.79
   2 ?   -3.5   0.0       5.6   5.6e+03     286     294 ..     751     759 ..     742     760 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.2e-06
                    SHHHHHHHHS....-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHHC CS
  UvrD-helicase   2 npeqreaias....lggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRieealkkaeqes 76 
                    np+q++ ++     +gg++l+   +G+GKT+ l + ++  + ++    +r l+   Tn   + l  R+++++ +++ +s
     KKY19247.1 483 NPSQEQVVRAsqkvSGGTLLIQGPPGTGKTYLLGQMMIPFMVHQ----KRALITSATNEGVNDLSLRLHAQCIEQNDHS 557
                    55666555443336899*********************998777....899*****************99666654333 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.6
                    EEEEE-GGG CS
  UvrD-helicase 286 lfmvGDpkQ 294
                    ++mvGD kQ
     KKY19247.1 751 TIMVGDFKQ 759
                    79******* PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00031      0.31       4      54 ..     501     549 ..     499     613 .. 0.75
   2 ?   -2.7   0.0       2.6   2.6e+03      89     104 ..     723     738 ..     704     745 .. 0.82
   3 ?   -2.9   0.1         3     3e+03      20      55 ..     809     841 ..     791     852 .. 0.74
   4 ?    4.4   0.1     0.018        18     341     359 ..     951     969 ..     944     972 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00031
     DUF2075   4 vlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakk 54 
                 +l++G +GtGKt++l +++       ++++a + s  ++ v+ l  +l  +
  KKY19247.1 501 LLIQGPPGTGKTYLLGQMMIPF--MVHQKRALITSATNEGVNDLSLRLHAQ 549
                 79**************999988..666666666666666666666555554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.6
     DUF2075  89 edvvivDEAhrlltks 104
                  +++++DEA r  +++
  KKY19247.1 723 PHILVFDEACRQVESE 738
                 589******9987754 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3
     DUF2075  20 nllaeleddeeertavylsvNhplvlvlrealakke 55 
                 n+++   +++++ ++ +l++N+pl + ++e  ++k 
  KKY19247.1 809 NVAY---QSKLQDHSSVLVQNRPLAARIQEFNKNKF 841
                 3333...45888899999999999999988776666 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.018
     DUF2075 341 llkNayrVLLtRGrkGlyi 359
                   +N+ +V L+R+r+Gly+
  KKY19247.1 951 TQLNRCNVALSRARNGLYL 969
                 568***************8 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.7e-06    0.0047       4      78 ..     492     606 ..     486     765 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.7e-06
      AAA_19   4 avealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae............atTiHrlal............. 77 
                 a ++++ ++ll+ ++pGtGKT++l +++  +   +    ++ l+ + t+  ++ l+ rl+a   e            ++T  +l+              
  KKY19247.1 492 ASQKVSGGTLLIQGPPGTGKTYLLGQMMIPFMVHQ----KRALITSATNEGVNDLSLRLHAQCIEqndhsyvirfhsIHTEKQLSRlpatlarppepns 586
                 33488899****************98887777766....678999999999999999995544447777776554444444444436666666777777 PP

      AAA_19  78 ...................l 78 
                                     
  KKY19247.1 587 rppinialteeedealeqlE 606
                 77666544444444444430 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   9.4e-05     0.093      19      45 ..     493     519 ..     485     620 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.4e-05
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrell 45 
                   + +++ +l+ G++G+GK+ l+ + +
  KKY19247.1 493 SQKVSGGTLLIQGPPGTGKTYLLGQMM 519
                 33344589**************97654 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   8.4e-05     0.084       3      47 ..     480     526 ..     478     537 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.4e-05
                 ---SHHHHHHHHHHHH-S..EEEEE--TTSSTTHHHHHHHHHHHHTT CS
        PhoH   3 kpktkeQkeylealkknd..ivfaiGpaGtGKtylavalavealkkk 47 
                 k  + +Q+++++a +k +   + + Gp GtGKtyl  ++ +  + ++
  KKY19247.1 480 KGLNPSQEQVVRASQKVSggTLLIQGPPGTGKTYLLGQMMIPFMVHQ 526
                 678999*******99555449999***********888877766554 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0009       0.9       3      93 ..     485     573 ..     483     611 .. 0.74
   2 ?    0.6   0.0      0.43   4.3e+02      91     130 ..     696     731 ..     674     744 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0009
                 HHHHHHHHHH..TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHH CS
                 xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplil..gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlsk 93 
                  Q++++ +    +gg +l++++ G+GKT      ++  +      ++++ali + t e +++   +l   + +  d +++  +++  +++qls+
  KKY19247.1 485 SQEQVVRASQkvSGGTLLIQGPPGTGKTYLLGQMMIPFM-----VHQKRALITSATNEGVNDLSLRLHAQCIEqNDHSYVIRFHSIHTEKQLSR 573
                 677777776666899***************888888666.....45779999999999888887777544443255444434444444555555 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.43
                 HHHHHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  91 lskldngvdivvgtpgrlddllstgklnlsqvrflVlDEa 130
                 +++l  ++  vv+tp+  ++      +n  q  +lV+DEa
  KKY19247.1 696 RDVL-YNASAVVTTPSLSIS---AAMVNAIQPHILVFDEA 731
                 4455.788999999977776...4557799999******9 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00019      0.19       2      50 ..     503     550 ..     502     581 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00019
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflakgl 50 
                    +++ +G+GK+ +lG ++  ++ ++k + l+t+ ++e v+ l  +l++++
     KKY19247.1 503 IQGPPGTGKTYLLGQMMIPFMVHQK-RALITSATNEGVNDLSLRLHAQC 550
                    7899*************99999976.9***********99987776554 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00029      0.29      32     117 ..     497     575 ..     480     609 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00029
      AAA_25  32 agelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravg.ealrddarllvldlagv.eslpLf 117
                  g++ l+ G+pgtGKt l+ ++++  +          +++++ +  ++ ++ ++l  Rl+a++ e++++    ++++++++ +  +L 
  KKY19247.1 497 SGGTLLIQGPPGTGKTYLLGQMMIPFMV---------HQKRALITSATNEGVNDLSLRLHAQCiEQNDHSYVIRFHSIHTEkQLSRLP 575
                 588999****************997773.........234444455555555599999999995555666667888887776666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.98u 0.35s 00:00:01.33 Elapsed: 00:00:00.55
# Mc/sec: 6888.70
//
Query:       KKY19248.1  [L=580]
Description: putative siderophore iron [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-17   64.1  54.0      1e-16   60.9  54.0    2.2  1  MFS_1     Major Facilitator Superfamily
    8.8e-10   37.6  28.2    1.2e-09   37.2  28.2    1.1  1  TRI12     Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
      0.012   15.8   2.6      0.012   15.8   2.6    2.5  2  Pox_A14   Poxvirus virion envelope protein A14
      0.059   13.0   2.9        1.4    8.6   0.1    3.0  2  DUF5336   Family of unknown function (DUF5336)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9  54.0   2.2e-20     1e-16       1     352 [.      65     484 ..      65     485 .. 0.90

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 2.2e-20
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslwlllvlrvlqGl 97 
                 ++l++f+ +++++i +++ p ++++++   +s   +   + +l+ ++  lp++ l+d +Gr   + +++++  lg l+++ a  +++ + +++ v+  +
  KKY19248.1  65 IWLIQFIQGFSSGISSTLTP-WVTSAFA-EHSLTATTSIVSGLVGGLVKLPYAKLMDVWGRPQGFAIMVACATLG-LIMM-AgcNNVKTYCAAQVFYYV 159
                 699***********999999.9*9**99.6677777777799999******************************.6666.4469999*********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGa.ilgpllggllasslgWravfyilaivsllafv.lfllll.peepperkrkspkeee..... 188
                 g+ ++  +  +++ad ++ ++r++ i+++++ + + + + gp++ ++l+  +g+r+ f + aiv+ +++  l++l++  e++ +++   p+  +     
  KKY19248.1 160 GYNGIDFTLTIFVADTSSLKNRAFLIAFMATPWIATVwAYGPAAQSILS-TIGFRWGFGVWAIVYPIVCApLIALFIyNERKAKKAGLLPE--Rvssnr 255
                 *********************************9999788888888887.99****************99754444413334444444444..336999 PP

       MFS_1 189 .................................................................kgtgpaplvpawkallkdpvlwillialllfffg 222
                                                                                  k  +p  ++p w++l  + v++  +++++++ ++
  KKY19248.1 256 tamqsiiyycrefdvigilllatglslfllsfslysyqteqwkspmiicfvifgsllivafalyeKYLAPVTFIP-WTLLMDRTVFF-TFTMVASIYLA 352
                 99*************************************************************************.**********8.8888888888* PP

       MFS_1 223 fsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgr..rrrlllallllllaalglallavtssavllllvlvl.iGfglgfvf 318
                 +++  +++ ++l  v++ + + +a+++  ++ +++++ a+++g +++  gr  +  l++++++++l++++++ +  +++++ +++++ + i fg+g+ +
  KKY19248.1 353 WYLWDSYFYSFLIVVFNQT-VSQATYITNIYTVGACFWAVIVGIIIRYNGRlkWLSLYFGVPITILGVALMIKFRQPDTNIGYIVMCQIfIAFGGGTLV 450
                 *******************.**************************9955555889999999999999999999999********88886888*****9 PP

       MFS_1 319 psllalasdlappeeagtasglfntagslggalg 352
                 ++ +  ++ + ++++  ++++   ++ ++gg++g
  KKY19248.1 451 ICEQMTVMAVSSQQNIPAILAMEAMVANIGGSIG 484
                 **999999999999999***************98 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2  28.2   2.6e-13   1.2e-09      98     480 ..     114     507 ..      67     528 .. 0.79

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 2.6e-13
       TRI12  98 mgrltdrfgr.rpfvilthilglvgaivgctatkfntllaamtllgva.agpagasplfvgelmsnktkflgllivsipvvvtsgl.spylgqrlaiqg 193
                   +l d +gr + f i+      +g i+ + +++++t  aa  +  v   g   +  +fv +  s k + + +  ++ p ++t  + +p     l+   
  KKY19248.1 114 YAKLMDVWGRpQGFAIMVAC-ATLGLIMMAGCNNVKTYCAAQVFYYVGyNGIDFTLTIFVADTSSLKNRAFLIAFMATPWIATVWAyGPAAQSILS-TI 210
                 56899999994456665543.445666666667788999999998886257777899**********99998999999*99988651555555555.55 PP

       TRI12 194 swrwifyiyiitsaia.vllivvwyyppsfaqlhg....kkvrkreela.......kldwigiilvivgvslfllgvswggkpnspwnsakviglissg 280
                  +rw f ++ i+  i    li ++ y    a+  g    +  ++r  +          d igi+l+++g slfll  s      + w+s  +i ++  g
  KKY19248.1 211 GFRWGFGVWAIVYPIVcAPLIALFIYNERKAKKAGllpeRVSSNRTAMQsiiyycrEFDVIGILLLATGLSLFLLSFSLYSYQTEQWKSPMIICFVIFG 309
                 69******9888776515578788777666554442221444567665411222225799*************************************** PP

       TRI12 281 lgslvvfalyevygkpvrpivppalfkdtrgfvcillissimgamnlslviiypqqvvnifgsslknweetawmsatasfgtgagvvvlgslfhlvrhi 379
                    +v falye y  pv  ++p +l+ d   f    +++si  a  l    +y    + +f  ++    ++++++   ++g+    v++g ++     +
  KKY19248.1 310 SLLIVAFALYEKYLAPVT-FIPWTLLMDRTVFFTFTMVASIYLAWYLWDSYFYSFL-IVVFNQTV---SQATYITNIYTVGACFWAVIVGIIIRYNGRL 403
                 ****************96.79***************************99999865.55787765...467789999999999999************* PP

       TRI12 380 rwqilvgalwltaflgamssvnrdnknaaialsvlsgfvvawaqditm....llvqfittdedlgvafavvaaarpfagsiftaafislysnrypkela 474
                 +w  l   + +t  lg    ++  + ++ i   v++ + +a+     +    + v  +++++++   +a+ a    + gsi ++   ++++  +p++la
  KKY19248.1 404 KWLSLYFGVPITI-LGVALMIKFRQPDTNIGYIVMCQIFIAFGGGTLViceqMTVMAVSSQQNIPAILAMEAMVANIGGSIGSTVAAAIWTGVFPNKLA 501
                 ****999999985.677777887788889999999999888876644411114466688999********99999******9999999*********99 PP

       TRI12 475 shlssa 480
                  +l ++
  KKY19248.1 502 KYLPAS 507
                 998654 PP

>> Pox_A14  Poxvirus virion envelope protein A14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       2.1   9.3e+03      56      69 ..     132     145 ..     128     167 .. 0.53
   2 ?   15.8   2.6   2.6e-06     0.012       9      68 ..     263     322 ..     256     327 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.1
     Pox_A14  56 ivillglllfsmyg 69 
                 + ++lgl+++++ +
  KKY19248.1 132 ACATLGLIMMAGCN 145
                 44555655555443 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.6e-06
     Pox_A14   9 nyystvliaGiiLLilacifafvdfskststtdkawralsivsFil.givillglllfsmy 68 
                  y     ++Gi+LL++ + +  + fs  + +t+  w++  i++F++ g +++++  l++ y
  KKY19248.1 263 YYCREFDVIGILLLATGLSLFLLSFSLYSYQTE-QWKSPMIICFVIfGSLLIVAFALYEKY 322
                 555556689**********99******999897.9*********75499999999999888 PP

>> DUF5336  Family of unknown function (DUF5336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1    0.0003       1.4       8      97 ..      28     113 ..      22     144 .. 0.69
   2 ?    3.1   0.6     0.014        64      42      97 ..     275     330 ..     270     351 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0003
     DUF5336   8 qgqqyggptqsfakqeeaqaaagpskLplyLsiavaaLGliayllgFgplltvsassadleeasatsgglglavvllLlagLlAgvslLP 97 
                 ++ + ++ t++f    ++++a  +      L +a +++ li+++ gF++ +  + +   ++++     + +l+ + +++ gL+ g+  LP
  KKY19248.1  28 KSDNEPAVTPEFQYGVQKAQAMTQVWTKENLILAYVVIWLIQFIQGFSSGISSTLTPWVTSAFA----EHSLTATTSIVSGLVGGLVKLP 113
                 5567788899998888888886666666777788888899*********555555442233333....3344445556666666665555 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.014
     DUF5336  42 vaaLGliayllgFgplltvsassadleeasatsgglglavvllLlagLlAgvslLP 97 
                  +a Gl  +ll+F+ +   +++ ++     ++ +g  l v+++L    lA v+ +P
  KKY19248.1 275 LLATGLSLFLLSFSLYSYQTEQWKSPMIICFVIFGSLLIVAFALYEKYLAPVTFIP 330
                 5789**********998888888777888888888889999999999999998888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       949  (0.052931); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.51
# Mc/sec: 3443.04
//
Query:       KKY19249.1  [L=464]
Description: putative glycoside hydrolase family 64 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   8.2e-109  364.3   0.9     1e-108  363.9   0.9    1.0  1  Glyco_hydro_64  Beta-1,3-glucanase


Domain annotation for each model (and alignments):
>> Glyco_hydro_64  Beta-1,3-glucanase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  363.9   0.9  5.9e-113    1e-108       3     369 .]      83     463 ..      81     463 .. 0.94

  Alignments for each domain:
  == domain 1  score: 363.9 bits;  conditional E-value: 5.9e-113
                     EEEEEEEESTT.GGEEEEEEEE-TTT--.EEEE-TTS-EEE--GGGGTSTT-EEEE.EB-ETTT-.....SEEEE-SE.EEEEEEEEESS---BE CS
  Glyco_hydro_64   3 lpltlvnntgs.ddvyayvtGldlatngalvlldadGtllyvpaspntaskkltpleediaiplgapgstktvtiPkqiasgRiyfsvgkkLkfl 96 
                     l+l+++nn +  ++++ayvtGld   +ga ++l ++Gt +y pa+p  +++++t + e +ai+l++ g+t ++++P++i+sgRiyfsvg +L+f 
      KKY19249.1  83 LSLAFTNNASItGNINAYVTGLDG--DGAAFFLISNGTAYY-PANP-LEDTTPTSIIESVAISLSSYGETLNISLPNYITSGRIYFSVG-ELNFA 172
                     67888898888788********97..5779*******7666.9999.677777899899******************************.***** PP

                     EEE-TT-.EEE---TTSTT-TTTT--EEEEEEEE..TTEEEEE---SSEE-S-EEEEEEESSS...-EEEEE-S-HHHHHHHHHHHS...-HHHH CS
  Glyco_hydro_64  97 lneasgppalvePsvtnpsDpnanvnfdfaEftyn.saglfaNisyVDfvslplgleltgasgatqtvkglkadglakvcaalkaqaakdgaawd 190
                     ++  ++++++v+Ps+tnpsDpn+nv+++f+Eft++ +agl+ N+syVD v+l +g  +++ s+++ +v gl++d+++kvc+ l++q+a+dg+ w+
      KKY19249.1 173 TTYGESGTTIVAPSFTNPSDPNINVSYGFVEFTWDkDAGLYSNLSYVDYVGLVIGQLVSTVSNGVCEVLGLPSDAVTKVCSLLAEQEATDGQIWS 267
                     *9655579**************************9899********************999999******************************* PP

                     TTB-......SS-EE-TTSTT-TTST..TTTTHHHHHHHHHHTTTS-EEEEETT..EEEEEEE..E.TEEEEEETTE-S---HHHHHH---S-HH CS
  Glyco_hydro_64 191 klvvkdsdgkvlrvlsPnkgsalnea.fagYfdsyvdevwskYatedLtvdtqakaGtvtGrvs.g.daltfgdggsfakPstadifgcnsGpfa 282
                     k +++ds+g++lrvl+P + ++++++ ++gY+d+yvd+vw+ Y+ ++L+++  ++ G++tG+v+ + ++l+f  ggsf+kP+ +di+gcnsGpfa
      KKY19249.1 268 KSCQTDSSGNPLRVLAPLHLTEIESSaLSGYYDDYVDQVWDYYSYNNLIITAGDN-GNFTGKVNnStGNLEFDLGGSFTKPDITDILGCNSGPFA 361
                     ************************99***************************98.*******96369****9999******************* PP

                     ................HHHHHHHHHHHHHTT-TT-......GGGTTGGGTTS..SS-HHHHHHHHTBGGG----STTTTGG.....G-S--EEES CS
  Glyco_hydro_64 283 .........tdsa...ekavqarLaAAfnRstlll.tadaqpskeeastyYkkeptNhYarlvHensvdgkgYaFaYDDvnp....dqsglvsdg 360
                              t  +   ++++++rL+AAfnRstlll  ++ qp++ ++++yY+++ptNhY+r+vH+ ++dgkgY+FaYDDv+p    d sgl+ ++
      KKY19249.1 362 npanystnsT--QtvaRESIVPRLCAAFNRSTLLLpGGNIQPDGVDSAQYYITSPTNHYSRIVHATETDGKGYTFAYDDVHPsdeeDVSGLCVAS 454
                     9999875533..2457****************************99*****8889**************************************** PP

                     SEEEEEEEE CS
  Glyco_hydro_64 361 npksltvtv 369
                     +p ++t+tv
      KKY19249.1 455 DPVQITFTV 463
                     ******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2971.12
//
Query:       KKY19356.1  [L=324]
Description: hypothetical protein UCRPC4_g04516 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-09   35.9   0.1    4.4e-08   33.6   0.0    2.1  2  AAA              ATPase family associated with various cellul
    7.2e-06   26.5   0.1    2.3e-05   24.9   0.0    1.9  2  AAA_16           AAA ATPase domain
    0.00012   21.4   0.0    0.00018   20.7   0.0    1.3  1  DUF815           Protein of unknown function (DUF815)
    0.00054   20.0   0.1     0.0011   19.0   0.1    1.5  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00058   19.9   0.0     0.0012   18.9   0.0    1.5  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0011   19.2   0.0     0.0025   18.0   0.0    1.7  1  AAA_28           AAA domain
     0.0018   18.2   0.0     0.0057   16.6   0.0    1.8  2  Rad17            Rad17 P-loop domain
     0.0021   18.0   0.0      0.004   17.1   0.0    1.5  1  ATPase_2         ATPase domain predominantly from Archaea
     0.0023   18.5   0.0      0.007   16.9   0.0    1.8  2  ABC_tran         ABC transporter
     0.0024   18.1   0.0      0.007   16.6   0.0    1.8  1  AAA_22           AAA domain
     0.0032   18.0   0.5     0.0071   16.9   0.0    1.9  1  AAA_18           AAA domain
     0.0055   17.2   0.1      0.014   15.9   0.0    1.6  1  AAA_23           AAA domain
     0.0056   16.4   0.0      0.012   15.4   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
     0.0063   16.9   0.0      0.031   14.7   0.0    2.1  2  RNA_helicase     RNA helicase
     0.0098   15.4   0.0      0.017   14.7   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
  ------ inclusion threshold ------
      0.012   15.4   0.0      0.023   14.5   0.0    1.4  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.018   14.8   0.0      0.031   14.0   0.0    1.3  1  AAA_30           AAA domain
      0.018   14.8   0.0      0.032   14.0   0.0    1.3  1  AAA_24           AAA domain
      0.026   14.7   0.1       0.11   12.7   0.0    2.0  2  AAA_33           AAA domain
      0.034   14.0   0.0      0.081   12.7   0.0    1.6  1  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
      0.036   14.4   0.1       0.48   10.8   0.0    2.2  2  AAA_19           AAA domain
      0.037   13.9   0.1      0.083   12.8   0.1    1.6  1  NACHT            NACHT domain
      0.046   13.3   0.1       0.14   11.8   0.1    1.7  2  SRP54            SRP54-type protein, GTPase domain
      0.089   12.0   0.0       0.16   11.1   0.0    1.3  1  NB-ARC           NB-ARC domain
        0.1   12.6   0.1       0.22   11.6   0.1    1.5  1  AAA_14           AAA domain
       0.12   11.6   0.0       0.22   10.8   0.0    1.4  1  Lyx_isomer       D-lyxose isomerase
       0.13   11.8   0.1       0.33   10.5   0.1    1.6  1  AAA_25           AAA domain
       0.14   12.0   0.0       0.27   11.1   0.0    1.5  1  NTPase_1         NTPase
       0.15   11.8   0.0       0.28   11.0   0.0    1.4  1  Bac_DnaA         Bacterial dnaA  protein
       0.17   11.6   0.0       0.71    9.6   0.0    1.8  2  Sigma54_activat  Sigma-54 interaction domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0         4   2.4e+03     101     126 ..     134     160 ..     101     168 .. 0.58
   2 !   33.6   0.0   7.4e-11   4.4e-08       1      43 [.     272     314 ..     272     320 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 4
                 STEEEEEEESS...GGGSTHHHHSTTSSE CS
         AAA 101 skvivigatnr...pdkldpallrgRfdr 126
                 s+++ ++++     ++++d  l   Rf+r
  KKY19356.1 134 SDFLSLCISRLdrrINDIDALLE--RFER 160
                 44555555554222444444444..4444 PP

  == domain 2  score: 33.6 bits;  conditional E-value: 7.4e-11
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgese 43 
                 vllyGp GtGKT+l+ka+ak+ +++++ i   +    y g+++
  KKY19356.1 272 VLLYGPQGTGKTTLVKAIAKSYQIRLFMIRRGRRAARYHGQRK 314
                 79***************************99988888887765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       5.3   3.1e+03      10     126 ..     152     161 ..     100     198 .. 0.65
   2 !   24.9   0.0   3.8e-08   2.3e-05      19      51 ..     264     296 ..     240     314 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 5.3
      AAA_16  10 eqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaav 108
                 +                                                                                                  
  KKY19356.1 152 D-------------------------------------------------------------------------------------------------- 152
                 2.................................................................................................. PP

      AAA_16 109 pelagaeasrllellkrl 126
                          +lle + r+
  KKY19356.1 153 ---------ALLERFERI 161
                 .........222222222 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 3.8e-08
      AAA_16  19 vrsgrp.elvllsGesGvGKsslvrellralekd 51 
                 + +g p + vll+G++G+GK++lv++++++++ +
  KKY19356.1 264 LPAG-PnSGVLLYGPQGTGKTTLVKAIAKSYQIR 296
                 3333.4699*******************988765 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.1e-07   0.00018      26      79 ..     237     295 ..     218     304 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.1e-07
      DUF815  26 klddLvgidkqkealvente.....qfleglpannvLLwGarGtGKSslvkallneyae 79 
                 +l+ L g+++  +a+++ +      q+l   p + vLL+G +GtGK +lvka+ ++y+ 
  KKY19356.1 237 DLNALPGLQDAIKAICRTIDfqlklQHLPAGPNSGVLLYGPQGTGKTTLVKAIAKSYQI 295
                 56666677777777666554111114445556689*******************99975 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   1.8e-06    0.0011       1      30 [.     271     300 ..     271     309 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.8e-06
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEE CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyv 30 
                 +vlL Gp+GtgK++l++ +a+ ++ +++++
  KKY19356.1 271 GVLLYGPQGTGKTTLVKAIAKSYQIRLFMI 300
                 59*******************999888886 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.9e-06    0.0012      13      46 ..     260     296 ..     244     301 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.9e-06
                 HHHHCH....TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  13 klakal....gdvilLeGdLGaGKTtlvrglakalgve 46 
                 kl++ l    ++ +lL+G+ G+GKTtlv+++ak+++++
  KKY19356.1 260 KLQH-LpagpNSGVLLYGPQGTGKTTLVKAIAKSYQIR 296
                 3333.23444445********************98875 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.3e-06    0.0025       2      44 ..     272     316 ..     271     324 .] 0.77

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.3e-06
      AAA_28   2 ivitGgestGKTtlleaLaar.gypvv.pEaareileeklakged 44 
                 + + G+++tGKTtl++a+a+  +++ +  + +r+  + ++++++ 
  KKY19356.1 272 VLLYGPQGTGKTTLVKAIAKSyQIRLFmIRRGRRAARYHGQRKHH 316
                 6799***************86688877777777777766655554 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         5     3e+03      82     135 ..     180     235 ..     170     250 .. 0.65
   2 !   16.6   0.0   9.6e-06    0.0057      30      73 ..     254     297 ..     245     304 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5
       Rad17  82 lkepdnqksdfkg..ltekesrflsqiesfkeleLkdakylklqklGddlrtdkkl 135
                 ++ ++nq+ d+    l+   s f   i   + l+L d    +++k   dl  d  +
  KKY19356.1 180 IRAASNQNRDITQqqLIASSSGFEQTIFEVPGLQLEDEYAARVSKCEVDLTNDTTI 235
                 47788887776441144555567777777788888887777777777777666665 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 9.6e-06
       Rad17  30 evkewlkadvLesrkkriLLisGPsGCgkstvvkvLskelgikl 73 
                  ++  lk + L+  ++  +L+ GP G gk+t vk ++k + i+l
  KKY19356.1 254 TIDFQLKLQHLPAGPNSGVLLYGPQGTGKTTLVKAIAKSYQIRL 297
                 56677999999999999999******************988765 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   6.8e-06     0.004      16      44 ..     265     293 ..     259     321 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6.8e-06
    ATPase_2  16 erepneiyfiYGpegsGKtaLlkeiienl 44 
                   +pn+ +++YGp+g GKt+L+k i++  
  KKY19356.1 265 PAGPNSGVLLYGPQGTGKTTLVKAIAKSY 293
                 56899999***************998765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       6.7     4e+03      79      80 ..     134     143 ..      82     207 .. 0.52
   2 !   16.9   0.0   1.2e-05     0.007      12      36 ..     270     294 ..     260     318 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 6.7
                 H........H CS
                 x........x RF
    ABC_tran  79 n........e 80 
                 +         
  KKY19356.1 134 SdflslcisR 143
                 1444444442 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.2e-05
                 SEEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  12 ekvaivGenGaGKStLlkllagllk 36 
                 + v + G+ G+GK+tL+k++a+ ++
  KKY19356.1 270 SGVLLYGPQGTGKTTLVKAIAKSYQ 294
                 568899***************9987 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.2e-05     0.007       8      37 ..     272     301 ..     267     318 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.2e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee 37 
                 ++++G+ GtGKTtl++ ++++++++ +  +
  KKY19356.1 272 VLLYGPQGTGKTTLVKAIAKSYQIRLFMIR 301
                 689******************988766655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.2e-05    0.0071       1      22 [.     272     293 ..     272     320 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.2e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrl 22 
                 +ll G++G+GKttl k+++k+ 
  KKY19356.1 272 VLLYGPQGTGKTTLVKAIAKSY 293
                 799***************9984 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.3e-05     0.014      15      39 ..     255     289 ..     252     291 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.3e-05
      AAA_23  15 idF...........skgltlItGpNGaGKTTildAi 39 
                 idF           ++g+ l++Gp G+GKTT++ Ai
  KKY19356.1 255 IDFqlklqhlpagpNSGV-LLYGPQGTGKTTLVKAI 289
                 666555566666545555.9***************9 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     2e-05     0.012      20      43 ..     267     290 ..     257     291 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2e-05
      AAA_29  20 dlkgatlltGpsGsGKSTllDAiq 43 
                  +++ +ll Gp+G+GK+Tl+ Ai+
  KKY19356.1 267 GPNSGVLLYGPQGTGKTTLVKAIA 290
                 455569**************9985 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       6.1   3.7e+03      49      64 ..      19      34 ..       6      58 .. 0.69
   2 !   14.7   0.0   5.1e-05     0.031       1      23 [.     272     294 ..     272     318 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 6.1
  RNA_helicase 49 gqevvvidDfgqvkde 64
                  +  ++ +d f+q+++e
    KKY19356.1 19 QRLFTAYDQFPQNRQE 34
                  5567789999999877 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 5.1e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakall 23 
                   ++lyGp+g+GK+tl+k +ak+ +
    KKY19356.1 272 VLLYGPQGTGKTTLVKAIAKSYQ 294
                   689**************998765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.8e-05     0.017      33      58 ..     269     294 ..     252     303 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.8e-05
       AAA_7  33 kkpvllvGptGtGKtviikdllkkld 58 
                 +  vll+Gp+GtGKt+++k + k+++
  KKY19356.1 269 NSGVLLYGPQGTGKTTLVKAIAKSYQ 294
                 5679***************9998876 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.8e-05     0.023      35      60 ..     271     296 ..     249     303 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.8e-05
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvk 60 
                  vllyGp G Gkttl k iak  +++
  KKY19356.1 271 GVLLYGPQGTGKTTLVKAIAKSYQIR 296
                 69******************987765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.2e-05     0.031      12      43 ..     263     294 ..     258     308 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.2e-05
      AAA_30  12 alltsgdrvavltGpAGtGKttalkalreawe 43 
                 +l ++++  ++l Gp GtGKtt++ka+++ ++
  KKY19356.1 263 HLPAGPNSGVLLYGPQGTGKTTLVKAIAKSYQ 294
                 5556666778999**************99886 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.4e-05     0.032       5      22 ..     272     289 ..     269     302 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.4e-05
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +l+yGp+g+GKTtl+k +
  KKY19356.1 272 VLLYGPQGTGKTTLVKAI 289
                 79************9987 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       4.4   2.6e+03     110     141 ..     139     166 ..     137     168 .. 0.77
   2 ?   12.7   0.0   0.00018      0.11       2      23 ..     272     293 ..     272     317 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 4.4
      AAA_33 110 tlkeRlakRaangddrsevpeealdrqkarfe 141
                 ++ +Rl +R ++    +++ +e ++r ++r+e
  KKY19356.1 139 LCISRLDRRIND----IDALLERFERILDRME 166
                 577777777774....7889999999999987 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00018
      AAA_33   2 vllvGlpGsGKstlaerllkkl 23 
                 vll G++G+GK+tl++ ++k  
  KKY19356.1 272 VLLYGPQGTGKTTLVKAIAKSY 293
                 7899************999765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00014     0.081       3      19 ..     273     289 ..     272     311 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00014
      AAA_21   3 vliGpNgsGKSnLLdal 19 
                 +l+Gp g+GK++L +a+
  KKY19356.1 273 LLYGPQGTGKTTLVKAI 289
                 79**************9 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.65   3.9e+02      64      90 ..     102     127 ..      79     197 .. 0.74
   2 ?   10.8   0.0    0.0008      0.48      10      35 ..     269     294 ..     262     303 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.65
      AAA_19  64 algaeatTiHrlalldfddlltealel 90 
                 ++g+++ T+H++ ++ +d+  +e+l+l
  KKY19356.1 102 EIGRAIATFHQV-MVYADTAHNEQLGL 127
                 456679999999.54444444333333 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0008
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallv 35 
                 ++ +l+ ++ GtGKT+++k+i + ++
  KKY19356.1 269 NSGVLLYGPQGTGKTTLVKAIAKSYQ 294
                 5668999************9998875 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   0.00014     0.083       3      22 ..     272     291 ..     270     296 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00014
                 EEEEC-TTTCHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklal 22 
                 v+l G++G GKTtL++ +a 
  KKY19356.1 272 VLLYGPQGTGKTTLVKAIAK 291
                 799***************97 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.5   2.1e+03      91     131 ..      87     126 ..      87     147 .. 0.61
   2 ?   11.8   0.1   0.00023      0.14       4      26 ..     272     294 ..     269     300 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.5
                 E--SSTTHHHHHHHHHHHHHHHSSSEEEEEEETTBHTHHHH CS
       SRP54  91 TaGrlqndkelmeelkkikkvvkpdevllvldattgqeavk 131
                 TaG  + d+  + ++++i +++++ + ++v   t+ +e++ 
  KKY19356.1  87 TAGLPHADSGSL-DINEIGRAIATFHQVMVYADTAHNEQLG 126
                 566666665554.4777888888888888877776666554 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00023
                 EEEEESTTSSHHHHHHHHHHHHH CS
       SRP54   4 illvGlqGaGKTttlaKLaallk 26 
                 +ll G+qG+GKTt +  +a+ ++
  KKY19356.1 272 VLLYGPQGTGKTTLVKAIAKSYQ 294
                 799*************9999886 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00027      0.16      19      44 ..     271     293 ..     259     298 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00027
                 CSEEEEEEESTTSSHHHHHHHHCCSH CS
      NB-ARC  19 qslvvalvGmgGvGKttlakqilnks 44 
                 +   v l+G  G GKttl+k i +++
  KKY19356.1 271 G---VLLYGPQGTGKTTLVKAIAKSY 293
                 4...789***************9984 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00037      0.22       5      27 ..     272     294 ..     269     310 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00037
      AAA_14   5 lvitGaRrvGKTtllkqlikell 27 
                 +++ G+  +GKTtl+k ++k++ 
  KKY19356.1 272 VLLYGPQGTGKTTLVKAIAKSYQ 294
                 7899**************98876 PP

>> Lyx_isomer  D-lyxose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00037      0.22       5      69 ..     150     214 ..     146     223 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00037
  Lyx_isomer   5 eineiikeaealieelkfklPpfakwtpeewkakkkeaeeivdnklGWDitdfgkgdfeklGltl 69 
                 +i++++++ e+++++++++ P f+ w   +++a++++ ++i++++l      f++  fe  Gl l
  KKY19356.1 150 DIDALLERFERILDRMEMARPTFSGWFSPDIRAASNQNRDITQQQLIASSSGFEQTIFEVPGLQL 214
                 68999*****************************************9999999999999999876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00055      0.33      36      53 ..     272     289 ..     259     294 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00055
      AAA_25  36 allaGapgtGKttlaldl 53 
                 +ll+G++gtGKttl+  +
  KKY19356.1 272 VLLYGPQGTGKTTLVKAI 289
                 79************8665 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00045      0.27       2      23 ..     272     293 ..     271     312 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00045
                 EEEE--TTSSHHHHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlell 23 
                 v++ Gp+G+GKtTlvk +++  
  KKY19356.1 272 VLLYGPQGTGKTTLVKAIAKSY 293
                 6788************999865 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00046      0.28      35      57 ..     270     292 ..     256     301 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00046
                 --EEEE-SSSSSHHHHHHHHHHH CS
    Bac_DnaA  35 nPlfiygevGlGktHLlkaigne 57 
                   +++yg+ G Gkt L+kai++ 
  KKY19356.1 270 SGVLLYGPQGTGKTTLVKAIAKS 292
                 5689****************976 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.2   1.3e+03      91     126 ..      92     126 ..      86     141 .. 0.67
   2 ?    9.6   0.0    0.0012      0.71      22      45 ..     269     292 ..     245     303 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.2
                      HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEESBT CS
  Sigma54_activat  91 kadgGtlfLDeigelplelQekLlrvlqegevervG 126
                      +ad G l ++eig+  +++ + ++   ++ + e++G
       KKY19356.1  92 HADSGSLDINEIGRAIATFHQ-VMVYADTAHNEQLG 126
                      799999999999986554433.33344555555555 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0012
                      SS-EEEECSTTSSHHHHHHHHHHH CS
  Sigma54_activat  22 dlsvlitGesGtGKellaraihea 45 
                      ++ vl+ G +GtGK++l +ai ++
       KKY19356.1 269 NSGVLLYGPQGTGKTTLVKAIAKS 292
                      478****************99764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                       128  (0.00713927); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.51
# Mc/sec: 1900.23
//
Query:       KKY19357.1  [L=485]
Description: putative meiosis-specific topoisomerase spo11 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.21s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3470.84
//
Query:       KKY19358.1  [L=254]
Description: hypothetical protein UCRPC4_g04518 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 1663.41
//
Query:       KKY19359.1  [L=1037]
Description: putative regulator of nonsense [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-28  100.2   0.0    1.9e-28   99.5   0.0    1.3  1  AAA_12           AAA domain
    5.5e-21   75.5   0.7      5e-19   69.1   0.0    3.1  2  AAA_11           AAA domain
    6.6e-11   42.3   0.0    4.9e-07   29.7   0.0    2.5  2  AAA_30           AAA domain
    2.6e-09   37.6   0.0    7.1e-09   36.2   0.0    1.8  1  AAA_19           AAA domain
    1.8e-07   31.1   0.1       0.01   15.6   0.0    3.5  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0075   16.7   0.0       0.03   14.7   0.0    2.0  1  AAA_16           AAA ATPase domain
     0.0076   16.3   0.0      0.017   15.1   0.0    1.6  1  ResIII           Type III restriction enzyme, res subunit
     0.0093   15.8   0.0      0.032   14.1   0.0    1.9  2  Helicase_RecD    Helicase
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.028   13.9   0.0    1.5  1  PhoH             PhoH-like protein
      0.019   14.1   0.0      0.042   12.9   0.0    1.5  1  T2SSE            Type II/IV secretion system protein
       0.03   14.6   0.0       0.11   12.7   0.0    1.9  1  AAA_22           AAA domain
       0.17   12.3   0.0       0.45   10.9   0.0    1.8  1  AAA              ATPase family associated with various cellul


Domain annotation for each model (and alignments):
>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   0.0   1.2e-31   1.9e-28       3     198 ..     697     893 ..     695     894 .. 0.91

  Alignments for each domain:
  == domain 1  score: 99.5 bits;  conditional E-value: 1.2e-31
      AAA_12   3 rSlferllkkekekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkrele..............aqealeepleplvfidvekseeekekkeksyi 87 
                  S fe+l++++ ++v lL++qYR h++I +  +  +Yk+++ +a+s+ +r+ +              a+ +    +++  ++d+ +s++ek   ++s+ 
  KKY19359.1 697 VSPFEHLQTRG-WPVCLLNMQYRAHKSIWEATNAAVYKKQVSTAPSAVDRPFFvkfmrnisrisftdATGKDFRLSRNSHWFDMINSKSEKPAGRTSKR 794
                 689********.**************************************999888888888888776666666777788888888999998889**** PP

      AAA_12  88 NeeEaelvvklvekllkkgseeerkkigvitpYraqvellkkklkekeeeksekeievntvdgfQGrekdviilslVRsnekkeigflkderrlNValT 186
                 N +E e+v  + e llk g +   ++  +++ Y+a  e l k++k ++++        + +d++QG e +v+ils+  +    +igfl +++r+NVa +
  KKY19359.1 795 NLMELEFVKGFHECLLKIGISG--DEMFILSAYQAHSEALIKQFKGSKTK-------AGNIDACQGAEASVVILSTAAT---DTIGFLGNQKRMNVATS 881
                 *********************9..9*******************965555.......588***************9877...79*************** PP

      AAA_12 187 RAkskliivGnk 198
                 RAk++ +++G +
  KKY19359.1 882 RAKEAQFVIGRP 893
                 **********86 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   3.4e-22     5e-19       2     257 ..     446     685 ..     445     689 .. 0.73
   2 ?   -1.5   1.1       1.1   1.7e+03     101     175 ..     960    1032 ..     948    1036 .. 0.61

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 3.4e-22
      AAA_11   2 lndsqreaiksalsese.itliqGPPGtgKT.ktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgneee 98 
                 ln+sq +a++++l  ++ i li+GPPGtgKT +t ++++ +        ++  ++++i v+a +N Av + +   +r+    +g++ + +i+ + ++ e
  KKY19359.1 446 LNNSQSNAVAQILAPRDrILLIHGPPGTGKThTTACGIFVAF-------KSTPKNRKIVVTARTNQAVQNCCIHAARNWRARTGRSAEDDILLLLSNHE 537
                 8********9999888879************44555666666.......57899***********************7778888888888887777773 PP

      AAA_11  99 riseavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelskeleeaeesleeevldeae 197
                   s+a+ + +   + + +   ++  +l+ + ++e+ + ++                 + + + ++e++ r   ++ +e +ke+++++ +l + v+ + +
  KKY19359.1 538 --STAMLRRK---EADPSGIDSKLYSLSLDYKRETTARNR--------------GGFHLFLSLSREARTRGWFEATEEERKEYDRQRLALDDLVMGRNK 617
                 ..22222222...122222222223333333333322222..............22344556666666667777777889999**************** PP

      AAA_11 198 ivltTlsgagsklleklak.......kfdvviIDEAaqavEpstliPl.rlgakkvvLvGDpkQLpat 257
                 + ++Tls  +s+l  + +         +  + +DEA+q   +  l+     +++ vvLvGDp QLp+ 
  KKY19359.1 618 VHFATLSLLASRLYIAKRSqtyerrfLVSHMFVDEAGQVSGLNLLVGWtAMNPEAVVLVGDPLQLPPY 685
                 *******997775433222478887778899****************955566*************95 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.1
      AAA_11  101 seavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerk 175 
                  ++a+++ + ++   + + +e + +l +++++el+ +a++++   ee+  e+++ +++ s++k+ +e+ +l+++ +
  KKY19359.1  960 QQAASPDTADTLATQLRLNEIELSLEEDLESELAHIAAQAKRAWEEA--ERKLGEYKASRAKMVAEKIALEEKLR 1032
                  55555566666666666666677777777777777777774443333..55566666666666666666665554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   3.3e-10   4.9e-07       2      61 ..     446     508 ..     445     539 .. 0.82
   2 !   10.0   0.0   0.00036      0.53      92     139 ..     648     693 ..     618     745 .. 0.76

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 3.3e-10
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalk.al.reaweaa.ggrviglAptgkaAkv 61 
                 ln++Q++av+++l+ +dr+ +++Gp+GtGKt++ + ++ ++   +  ++++++ A t++a ++
  KKY19359.1 446 LNNSQSNAVAQILAPRDRILLIHGPPGTGKTHTTAcGIfVAFKSTPkNRKIVVTARTNQAVQN 508
                 899***************************966552341555544456************987 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00036
      AAA_30  92 livDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrd 139
                 + vDEag v+  +l    +a++     v+lvGD+ Ql++ ++ ++ r 
  KKY19359.1 648 MFVDEAGQVSGLNLLVGWTAMNP--EAVVLVGDPLQLPPYHTTEMSRV 693
                 679******98777666666655..89***********9777666555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   4.7e-12   7.1e-09       7     143 ..     459     684 ..     450     687 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 4.7e-12
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal............................ 77 
                 a ++++ll+ ++pGtGKT+++ + + ++ + +  + ++i++ a t++A+++      a + +a+T  +  +                            
  KKY19359.1 459 APRDRILLIHGPPGTGKTHTTACGIFVAFKSTPKN-RKIVVTARTNQAVQNCCIHA-ARNWRARTGRSA-Eddillllsnhestamlrrkeadpsgids 554
                 556789999**************999999998664.***************98777.567778887755.4588888889999999999999******* PP

      AAA_19  78 ...............................................................ldfddlltealelle............eaeeekklq 101
                                                                                ++f +l                     ++ e+++l 
  KKY19359.1 555 klyslsldykrettarnrggfhlflslsreartrgwfeateeerkeydrqrlalddlvmgrnkVHFATL--------SllasrlyiakrsQTYERRFL- 644
                 ***************************************************888777754444333333........133366666665544455555. PP

      AAA_19 102 eeellivDEfqdvdelqyrLlkallgek.kklllvGDpdQliy 143
                    +++vDE+ +v+ l  +Ll  ++  + + ++lvGDp Ql++
  KKY19359.1 645 -VSHMFVDEAGQVSGL--NLLVGWTAMNpEAVVLVGDPLQLPP 684
                 .5599********865..4555555556588**********97 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.062        93       2      13 ..     466     477 ..     465     511 .. 0.89
   2 !   15.6   0.0   6.8e-06      0.01      24     119 ..     610     701 ..     601     746 .. 0.74
   3 !    8.4   0.0    0.0011       1.6     167     229 ..     823     886 ..     779     890 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.062
  Viral_helicase1   2 vvhGvpGcGKSt 13 
                      ++hG pG GK++
       KKY19359.1 466 LIHGPPGTGKTH 477
                      89*********8 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 6.8e-06
  Viral_helicase1  24 iltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDEylllhaGyill.laalskaklvilfGDplQipfhsrnasfllahlps 116
                      +l+++r+ +  +t ++  +     ++ ++++  ++ s     +++DE++++  G+ ll   +  + + v+l+GDplQ p  ++ + + +a  +s
       KKY19359.1 610 DLVMGRNKVHFATLSLLASRLYIAKRSQTYERRFLVS----HMFVDEAGQVS-GLNLLvGWTAMNPEAVVLVGDPLQLPPYHTTEMSRVAFGVS 698
                      5667777777777777777777778888888888876....89*******97.9999977899999***********98766666555554444 PP

  Viral_helicase1 117 sls 119
                       ++
       KKY19359.1 699 PFE 701
                      444 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0011
  Viral_helicase1 167 lvyltftqalkealgvr..evttvhevqGltfdkVtlvllketdlelisesrenllvAlTRhrks 229
                       +y ++++al ++ + +  ++     +qG ++++V+l +   td   +  ++  + vA +R++++
       KKY19359.1 823 SAYQAHSEALIKQFKGSktKAGNIDACQGAEASVVILSTA-ATDTIGFLGNQKRMNVATSRAKEA 886
                      4667777777777777678788899***********9999.6666667788***********985 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     2e-05      0.03      15      41 ..     453     479 ..     450     531 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2e-05
      AAA_16  15 alervrsgrpelvllsGesGvGKsslv 41 
                 a+ ++ ++r +++l++G++G+GK+   
  KKY19359.1 453 AVAQILAPRDRILLIHGPPGTGKTHTT 479
                 6777888899**************876 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.1e-05     0.017       4      65 ..     446     503 ..     443     549 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHH CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprks 65 
                 l++ Q +a+ ++l+     rd+ +li+ + GtGKT + a  i   +k+ ++++ +++  r++
  KKY19359.1 446 LNNSQSNAVAQILA----PRDRILLIHGPPGTGKTHTTACGIFVAFKSTPKNRKIVVTARTN 503
                 67788888888873....6789999*************888888888888887666666654 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.2e-05     0.032       2      53 ..     467     520 ..     466     553 .. 0.79
   2 ?   -3.5   0.0       5.2   7.8e+03      91     102 ..     645     656 ..     592     670 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.2e-05
  Helicase_RecD   2 ltAdRGRGKS..aalGlalaaliaegksnilvtapskenvktlfeflakgleal 53 
                    + + +G+GK+  +a G+++a     ++ +i+vta ++++v++   ++a++ +a 
     KKY19359.1 467 IHGPPGTGKThtTACGIFVAFKSTPKNRKIVVTARTNQAVQNCCIHAARNWRAR 520
                    78899****8224567777777777779**************999998877765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.2
  Helicase_RecD  91 adllvvDEAAai 102
                       ++vDEA ++
     KKY19359.1 645 VSHMFVDEAGQV 656
                    367899999766 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.9e-05     0.028       6      55 ..     447     499 ..     444     510 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.9e-05
                 SHHHHHHHHHHH..H-SEEEEE--TTSSTTHHHHHHHHHHHHT.TS-SEEEEE CS
        PhoH   6 tkeQkeylealk..kndivfaiGpaGtGKtylavalavealkk.kkvkriilt 55 
                 +++Q++++ ++   +  i+ + Gp GtGKt+ + +  + a+k+  k ++i++t
  KKY19359.1 447 NNSQSNAVAQILapRDRILLIHGPPGTGKTHTTACGIFVAFKStPKNRKIVVT 499
                 67888888887768888**************9988777777774566677766 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.8e-05     0.042     101     148 ..     437     481 ..     430     502 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.8e-05
       T2SSE 101 keltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllya 148
                 ++ +l++lg ++++++++a++l+       ++l+ G+ g+GKt ++  
  KKY19359.1 437 SQADLAQLGLNNSQSNAVAQILAPR---DRILLIHGPPGTGKTHTTAC 481
                 567899****************988...99*************87743 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.5e-05      0.11       5      22 ..     462     479 ..     460     519 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.5e-05
      AAA_22   5 agilvvtGesGtGKTtll 22 
                 ++il+++G++GtGKT++ 
  KKY19359.1 462 DRILLIHGPPGTGKTHTT 479
                 689************985 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0003      0.45       1      14 [.     465     478 ..     465     547 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0003
                 EEEESSTTSSHHHH CS
         AAA   1 vllyGppGtGKTll 14 
                 +l++GppGtGKT +
  KKY19359.1 465 LLIHGPPGTGKTHT 478
                 699*********65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1037 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.47
# Mc/sec: 6578.47
//
Query:       KKY19360.1  [L=672]
Description: hypothetical protein UCRPC4_g04520 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.17   11.9   0.6       0.36   10.8   0.6    1.5  1  Laminin_II  Laminin Domain II


Domain annotation for each model (and alignments):
>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.6     2e-05      0.36       8     102 ..     225     316 ..     220     323 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2e-05
                 XXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHHHHHHHHHH CS
  Laminin_II   8 anetakevleqlaplsqnlen..tkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseikelIaqA 102
                 a+ t  +vl   ++++  ++n  ++ +l+ei ++ ++++e+  d+  +   Ar ++++++  +++L++k  ++k   ++   l+dn ++ k  +  A
  KKY19360.1 225 AKLTSRHVLLEDEDMDLTVSNrtLSPSLEEIVNDHDHITEEFYDKRAQDLGARFAISTINDRVEKLEQK--NIKSTLDN---LKDNTKKGKDFVDNA 316
                 556778899999999999987436889*****************************************9..99999999...999999888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 4254.70
//
Query:       KKY19361.1  [L=361]
Description: putative high affinity methionine permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-63  213.6  24.3    2.9e-41  141.7   6.9    2.0  2  AA_permease_2  Amino acid permease
      8e-11   41.2  21.2    7.3e-10   38.0   6.1    2.0  2  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2  10.7   3.1e-26   2.8e-22       1     126 [.      46     173 ..      46     176 .. 0.91
   2 !  141.7   6.9   3.3e-45   2.9e-41     162     351 ..     168     360 ..     167     361 .] 0.90

  Alignments for each domain:
  == domain 1  score: 79.2 bits;  conditional E-value: 3.1e-26
  AA_permease_2   1 lsllsafalvigsvigsgifvkn.....laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpv 91 
                    ++ +sa++l+++++ig+gif+++     l +s+g al++wv +++++   a+++vy+E+++a+pr+gG+++y+++++ k+ + ++++++ +  +++
     KKY19361.1  46 IGVVSAAFLIFNRMIGTGIFATPstifeLSGSVGLALFIWVAGMIIAA--AGMAVYLEFGTAIPRNGGEKNYLEYVYRKPKFLVTGFYTGYVVLLG 139
                    7899**********************9999999999999999988887..9*********99********************************** PP

  AA_permease_2  92 lasilsv.aasyllnalgpdlqgntwltyliaiail 126
                    +a+++sv +++y+lna++ ++  n+w +++++ + l
     KKY19361.1 140 WAGSNSVvFGEYILNAAQVEV--NRWNQRGVGLVAL 173
                    *9997665********98777..7788888887755 PP

  == domain 2  score: 141.7 bits;  conditional E-value: 3.3e-45
  AA_permease_2 162 lglitvdgggfsslstetdtffpn..gwp.gvllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeian 252
                    +gl++++gg   +++++ d+ f +  g+  gv+ +l+ v+ws++G+++a++ ++e k+  +++++a++++l++v++ly+lvnia++++vp+ ei +
     KKY19361.1 168 VGLVALGGGLKIDKPHNFDNAFDGtsGSAyGVVTALYNVIWSYIGYSNANYALSETKNpvRTLKIAAPLALGTVGILYMLVNIAYFAAVPKAEIIS 263
                    57788888888777666777666644555459***********************999999*********************************99 PP

  AA_permease_2 253 lsnlgsvaalffeavggkvvaiivvilialsllgaintavigssrvlealardgvlP..rffakvnkfgspiraiiltaivslillllfllas..s 344
                    +++++  aa ff++v+g  +++++++++als++g+++++++++ r++++l+r+gvlP  rf+a+  +f++p+++++ +++vs+++    +la+  +
     KKY19361.1 264 SGRIL--AASFFRNVFGEKAERAISVFVALSAFGNVLSVIFSQGRLVQELGREGVLPfsRFWASNKPFNAPLAGLFEHWVVSVVI----MLAPppG 353
                    99976..***************************************************************************554....3455579 PP

  AA_permease_2 345 aaynfll 351
                    +aynf+l
     KKY19361.1 354 DAYNFIL 360
                    *****98 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   7.0   4.9e-05      0.44      10      86 ..      59     140 ..      53     163 .. 0.84
   2 !   38.0   6.1   8.1e-14   7.3e-10     182     355 ..     185     350 ..     178     361 .] 0.85

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 4.9e-05
  AA_permease  10 viGtglfvglgvvlsqaGplgallayllagvviflvmlslg.eiatngpksggfytyasrflgp....elGfviGlnylfsw 86 
                  +iGtg+f   + +    G +g+ l + +ag++i++++++++ e+ t++p++gg  +y + +  +      Gf++G+  l+ w
   KKY19361.1  59 MIGTGIFATPSTIFELSGSVGLALFIWVAGMIIAAAGMAVYlEFGTAIPRNGGEKNYLEYVYRKpkflVTGFYTGYVVLLGW 140
                  8*********************99999999999999999988**********999887765544333456888888766555 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 8.1e-14
  AA_permease 182 fknnlppgfakeeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvif 279
                  f+n + +     ++g+ ++++ ++  v+ ++ G+++  ++ +E+k+P +++++a   ++ +++i+Y l+ +++ + vp     +   ++ a s f ++
   KKY19361.1 185 FDNAFDG-----TSGSAYGVVTALYNVIWSYIGYSNANYALSETKNPVRTLKIAAPLALGTVGILYMLVNIAYFAAVPKAEIISSGRILAA-SFFRNV 276
                  4444444.....5889**************************************************************9997777766655.888888 PP

  AA_permease 280 ikesgvsvlaplinaviltaalssansslysasRvlyslakdglaP..kvlkkvskrgvPlraillsmiisllallla 355
                  + e   +++++++++  ++++ls     ++s  R+++ l ++g++P  ++ +  +  + Pl++++  +++s++++l+ 
   KKY19361.1 277 FGEKAERAISVFVALSAFGNVLS----VIFSQGRLVQELGREGVLPfsRFWASNKPFNAPLAGLFEHWVVSVVIMLAP 350
                  88888888888888777777776....58999***************777777777899****************764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2471.69
//
Query:       KKY19362.1  [L=370]
Description: putative had-superfamily hydrolase subfamily ia variant 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.7e-08   32.3   0.0    1.6e-07   31.6   0.0    1.3  1  HAD_2           Haloacid dehalogenase-like hydrolase
     0.0017   18.4   0.0     0.0035   17.4   0.0    1.5  1  Hydrolase_like  HAD-hyrolase-like
  ------ inclusion threshold ------
       0.02   14.4   0.0      0.033   13.7   0.0    1.3  1  DUF2608         Protein of unknown function (DUF2608)


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   2.6e-11   1.6e-07     108     175 ..      10      76 ..       2      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 2.6e-11
       HAD_2 108 aveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikv 175
                 a+ +k +++++ s+Fd   ts +v+ +KP+ + ++ +le +k ++ee+i+v D++  i aa+ +gi+ 
  KKY19362.1  10 AMLQKHTEFNW-SIFDGAFTSGEVGMRKPELRFYRHVLEMTKSEPEETIFVDDKSENILAARSLGITG 76 
                 45556666665.99***************************************************975 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   5.8e-07    0.0035       2      46 ..      34      77 ..      33      80 .. 0.96

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.8e-07
                    .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEE CS
  Hydrolase_like  2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksv 46
                    ++KPe  +y+  le ++s+pee++++ D+    i++A+  G++++
      KKY19362.1 34 MRKPELRFYRHVLEMTKSEPEETIFVDDK-SENILAARSLGITGI 77
                    69***************************.***********9987 PP

>> DUF2608  Protein of unknown function (DUF2608)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.5e-06     0.033     171     196 ..      44      69 ..      35      83 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.5e-06
     DUF2608 171 klLdkigrepksviFiDDkkknlasv 196
                 ++L+ +++ep++ iF+DDk +n+ + 
  KKY19362.1  44 HVLEMTKSEPEETIFVDDKSENILAA 69 
                 79********************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2516.03
//
Query:       KKY19363.1  [L=353]
Description: putative heat shock protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-07   29.0   0.1    9.7e-07   28.3   0.1    1.2  1  Septin    Septin
  ------ inclusion threshold ------
       0.22   11.6   0.7       0.52   10.4   0.7    1.6  1  CD52      CAMPATH-1 antigen


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   1.1e-10   9.7e-07     126     186 ..      27      87 ..      17     105 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.1e-10
                 SS-HHHHHHHHHHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT--------SSSS CS
      Septin 126 glkpldvelmkklsekvnliPviaKaDtltkeElkefKkkireeleeeeikiyklpdeeed 186
                 +   +d++++  l+e  n+iP+iaK+D+l +e + e++++i++ l+++  +++++ +++e+
  KKY19363.1  27 ETMSVDLRTISTLAEIGNVIPLIAKSDCLDEEQILEMREEITTFLSSSPARVFSFAHSDEQ 87 
                 55679*************************************************7666554 PP

>> CD52  CAMPATH-1 antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.7   5.8e-05      0.52       4      31 ..     167     193 ..     164     197 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.8e-05
        CD52   4 aTtaastTKkp.ksgapalsslgggsvLf 31 
                 +T +as   +p   g+pal+s+++++vL 
  KKY19363.1 167 RTPSAS--PRPsTIGSPALTSVSASGVLV 193
                 565666..678778*************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 2198.33
//
Query:       KKY19364.1  [L=465]
Description: putative sec20 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-13   51.0   0.7    2.8e-13   49.6   0.7    1.8  1  Sec20     Sec20
  ------ inclusion threshold ------
       0.24   11.6   1.9        1.8    8.8   0.1    2.8  3  CUT       CUT domain


Domain annotation for each model (and alignments):
>> Sec20  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.7   3.1e-17   2.8e-13       3      91 ..     209     297 ..     207     298 .. 0.98

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 3.1e-17
       Sec20   3 akqiTeslraisqllsqevqqSeenleeldastkslekleeeykqvedvlsrskklvkklerrdktdkllvflalglflacvvyvvkkR 91 
                 ++++T++lr+ ++ll++ ++qS  ++e+l++s+  l +l+e y +++ +l  s+ l ++l +++k+d   +  a+   + +  ++v++R
  KKY19364.1 209 SSDMTNALRRTHNLLQSSIEQSLFAAETLESSSAALATLSESYSSLDAILASSRSLASSLIKSNKSDTWYLTTAFYVCVSTLAWLVFRR 297
                 689*************************************************************************************9 PP

>> CUT  CUT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.61   5.5e+03       7      21 ..      46      60 ..      42      61 .. 0.81
   2 ?    1.1   0.0     0.051   4.6e+02      14      49 ..     137     186 ..     129     198 .. 0.79
   3 ?    8.8   0.1    0.0002       1.8      16      45 ..     220     249 ..     200     281 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.61
         CUT  7 tkdiaqkvkeeLkra 21
                 +++a+++++ Lk++
  KKY19364.1 46 REELASDIQQSLKEQ 60
                5789999****9986 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.051
         CUT  14 vkeeLkrasisqavFAekvlnrsqgtl..............selLrkPkp 49 
                  +++++ra  s + FA+++  r +  l              s+l+++P++
  KKY19364.1 137 TRRHFRRARLSAKRFADEAKTRQREELfapilsedtepvasSDLINQPQH 186
                 578899999********999998777667777777777777888888765 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0002
         CUT  16 eeLkrasisqavFAekvlnrsqgtlselLr 45 
                   L + si q++FA + l+ s   l+ l +
  KKY19364.1 220 HNLLQSSIEQSLFAAETLESSSAALATLSE 249
                 3466677**************888876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       922  (0.0514251); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.49
# Mc/sec: 2866.69
//
Query:       KKY19365.1  [L=295]
Description: putative inorganic pyrophosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-57  193.8   0.1      2e-57  193.5   0.1    1.1  1  Pyrophosphatase  Inorganic pyrophosphatase


Domain annotation for each model (and alignments):
>> Pyrophosphatase  Inorganic pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.5   0.1   1.1e-61     2e-57       1     159 [.      53     234 ..      53     235 .. 0.97

  Alignments for each domain:
  == domain 1  score: 193.5 bits;  conditional E-value: 1.1e-61
                      EEEEE-TTCSEEEEEETTT...........TEEEEEEE-SSSB-BSSEEEEETT--BT.......CCBEETSSSEEEEEESSS---TTEEEEEE CS
  Pyrophosphatase   1 vvvEiprgsnaKyeidkee...........gklrldrvlftskgypanYGfipqTled.......telkGDgDPlDvlvlgeeplspgevvevk 76 
                      ++vEipr++n K+ei+kee           gklr++r++f++kgy +nYG++p+T+ed       t++kGD+DPlDv+++ge   ++g+v++vk
       KKY19365.1  53 MIVEIPRWTNGKLEISKEEflnpikqdvkkGKLRFVRNCFPHKGYLWNYGAFPRTWEDpnvvhpeTKAKGDNDPLDVCEIGELVGYTGQVKQVK 146
                      89*******************************************************************************9999********* PP

                      EEEEEEEEETTEEEEEEEEEETTSGGGTT-SSGGG....STHHHHHHHHHHHHHTTTTSCCT-SE.EEE.EEEEHHHHHHHHHHHHHHH CS
  Pyrophosphatase  77 vlGvlamiDegetDdKiiavpvkdprlkkindied....lpgllleeiehfFetykdlegkkknv.kve.ewkdkeeAekvieeahery 159
                      vlGv+a++De+etD+Kii+++v+dp   k+nd+ed    lpgll ++++++F+ yk+++gk +n+ +++ e+k+k++A++vi+e+ e++
       KKY19365.1 147 VLGVMALLDEEETDWKIIVIDVNDPLAPKLNDVEDverhLPGLL-RATNEWFRIYKIPDGKPENQfAFSgECKNKKYAMDVIRECSEAW 234
                      *************************779*******888888888.***************966888*********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2327.49
//
Query:       KKY19366.1  [L=408]
Description: putative trna dihydrouridine synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-42  144.7   0.0    1.4e-41  142.6   0.0    1.8  1  Dus          Dihydrouridine synthase (Dus)
  ------ inclusion threshold ------
      0.024   15.0   0.0       0.15   12.4   0.0    2.0  2  Radical_SAM  Radical SAM superfamily
      0.042   13.2   0.0      0.085   12.2   0.0    1.4  1  TMP-TENI     Thiamine monophosphate synthase


Domain annotation for each model (and alignments):
>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.6   0.0   2.4e-45   1.4e-41       2     239 ..      29     293 ..      28     340 .. 0.76

  Alignments for each domain:
  == domain 1  score: 142.6 bits;  conditional E-value: 2.4e-45
                 E---TTTS-HHHHHHHHHTT-SSEEEEEEEE-SSS---HHHHHHH-GGGGGT...........................SCEEEEEE-S-HHHHHHHHH CS
         Dus   2 laPmagvtdlpfRelvrefgataLvvtemvtakaivreekvrirmlseeeee...........................tplavQlggsdpallaeaAk 73 
                 laPm++  +lp R l   +ga+ Lv  +    +a++  ++++  ++s+ e +                            +l+ Q+g+++p+l++eaAk
  KKY19366.1  29 LAPMVRSGELPSRLLALHYGAD-LVWGPETIDRAMIGTTRRVNPRTSCIEWSrissnggrpdqpskenvlyridparegGKLIYQIGTAKPELAVEAAK 126
                 5666666666666666666666.5544444444444444444444444333334444455555555555555555666689****************** PP

                 HHHHTT-SCEEEEESSTTEEETTEEEGGGGGGSHHHHHHHHHHHHCCSS....S-EEEEEESESSTTTC.HHHHHHHHHHCT-SEEEEESS.ECCCTT- CS
         Dus  74 lvadlgadeIdlNvGCPskkvtrggaGaaLlrkpdlvaqivkavvkave....iPvtvkirigiddeeenalelakiveaaGaqaltvHgR.traqnye 167
                 lva  ++ +Id+N+GCP++++t gg+GaaLl++p+ +a+i++a+v+ v+    i ++vkir+   d+  ++ +l++++ a+G++ lt+H+R t+++ +e
  KKY19366.1 127 LVAG-DVAGIDVNAGCPKPFSTTGGMGAALLKEPERLASILEALVEEVGkvweIGISVKIRLL--DTPAETEKLVRRLVATGITGLTIHCRtTPMRPRE 222
                 ***9.********************************************66555555555554..6677889*******************87788777 PP

                 C..G--CHHHHHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHHHHHHHHHSC------ CS
         Dus 168 g..tadweaIkevkqavsipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlfaestavktgeaepapp 239
                    + +++ I++v+++  +  ++NGd+++++ a + ++e G+dg mi+ +a++n   f+  t+ +    +p  +
  KKY19366.1 223 RaiREQLRMIADVCREAGVACLVNGDVYNRDTAFELMKEYGVDGGMIATAAESNSSAFR--TKTDG-GLAPWRE 293
                 77799*************************************************99998..33333.3333333 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.23   1.4e+03      24      74 ..      86     131 ..      74     185 .. 0.47
   2 ?   12.4   0.0   2.6e-05      0.15      29     140 ..     189     301 ..     185     309 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.23
                  HHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  24 grgrslsveeileevkelkaekgvkevilgggepllypdfvellerlakla 74 
                  gr+   s+e++l  ++ ++ e g+k + + g   ++ p++++++++l++ +
   KKY19366.1  86 GRPDQPSKENVLYRIDPAR-E-GGKLIYQIG---TAKPELAVEAAKLVAGD 131
                  3344444444444443332.1.122222222...24444444444444444 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2.6e-05
                  HHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC..CCTEEEEEEECSSCHG.HHHHHHHHHTT..-SEEEEEEBSSSHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx.xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  29 lsveeileevkelkaekgvkevilgggepllypdfvellerlakla..vpgiritvetngtlpd.eeklerllelg..vdrvslgleaaddekvlklm 121
                   ++ e +++v++l +  g+ +++++  +  ++p++  + e+l+ +a   ++  +++ +ng + + +   e+++e+g     ++  +e+ ++  ++ ++
   KKY19366.1 189 DTPAETEKLVRRL-VATGITGLTIHCRTTPMRPRERAIREQLRMIAdvCREAGVACLVNGDVYNrDTAFELMKEYGvdGGMIATAAESNSSA-FRTKT 284
                  589999*******.9******************************9****************99************7777788888888888.88777 PP

                  TCTSHHHHHHHHHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 122 nrghtfeevlealeklrea 140
                   + +++  + e++ek+ e+
   KKY19366.1 285 -D-GGLAPWREVVEKYVEL 301
                  .4.6677777777777666 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.4e-05     0.085      13      66 ..     192     249 ..     185     266 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.4e-05
    TMP-TENI  13 eellevveealkggvtlvqlRek....eldarellelaeklaalcrkygvpliindrv 66 
                 +e +++v+++++ g+t +++  +       +r+++e+ + +a++cr++gv+ ++n +v
  KKY19366.1 192 AETEKLVRRLVATGITGLTIHCRttpmRPRERAIREQLRMIADVCREAGVACLVNGDV 249
                 5678999999999999766655533555678999*********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 2493.45
//
Query:       KKY19367.1  [L=436]
Description: hypothetical protein UCRPC4_g04527 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-54  186.3  18.6    9.1e-54  183.3  18.6    2.1  1  Dynamitin        Dynamitin
     0.0097   15.4   1.0     0.0097   15.4   1.0    2.9  3  Golgin_A5        Golgin subfamily A member 5
  ------ inclusion threshold ------
       0.01   16.1  15.0      0.011   16.0   1.9    3.2  3  Jnk-SapK_ap_N    JNK_SAPK-associated protein-1
      0.018   13.9  13.4       0.47    9.3   3.3    3.2  3  Spc7             Spc7 kinetochore protein
      0.039   14.0   0.5      0.039   14.0   0.5    3.9  4  Laminin_II       Laminin Domain II
      0.056   14.0  14.3       0.42   11.1   0.9    3.3  3  APG6_N           Apg6 coiled-coil region
       0.52   10.8  11.0        3.4    8.2   0.6    3.9  4  ZapB             Cell division protein ZapB
        0.6   10.6   8.6       0.21   12.0   0.9    3.6  3  Snapin_Pallidin  Snapin/Pallidin
       0.85    9.4   7.9        9.8    6.0   0.5    3.1  3  DUF724           Protein of unknown function (DUF724)
        2.6    8.2   8.7        4.9    7.3   0.9    3.0  2  GvpK             Gas vesicle protein K
          4    7.5   5.3        2.8    8.1   1.1    2.6  3  DUF1993          Domain of unknown function (DUF1993)
          9    7.5  10.6        2.4    9.3   1.6    3.1  3  SOGA             Protein SOGA


Domain annotation for each model (and alignments):
>> Dynamitin  Dynamitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.3  18.6   6.1e-57   9.1e-54       2     387 ..      17     427 ..      16     428 .. 0.86

  Alignments for each domain:
  == domain 1  score: 183.3 bits;  conditional E-value: 6.1e-57
   Dynamitin   2 pDvYETpDlpeddstekesskeseseeelesediersslnpneArskFkgkkvdakgvDFsdriskkertgykasssreyeladege.........eke 91 
                 pD+Y Tp+l +d st                    ++s   +eAr++F++++vda++vDFsdr+     ++y++ss+ +++ +++g+         e+e
  KKY19367.1  17 PDIYQTPELVDDASTA-------------------KVSSPLDEARTRFEPSYVDARDVDFSDRVGLA-HKSYRTSSRIRRRRSKGGTeelgdisdeEQE 95 
                 7777777777663333...................34557899***********************9.99***9998888877777789********** PP

   Dynamitin  92 tleqklqRLqrEveeleeEvekakeaakeseeeeldpvelaeqleslqkqLeeleellgedsaasltdaqealakrllsqleefkeskaaskkkeksnk 190
                 t + +l+RL+rE+eel++++e+a   +++   e++ +v++ + ++ l+  L+++           + ++ ++ +++ l+ l++  e        ++ n 
  KKY19367.1  96 TDQVRLARLRREAEELKQQIEEADGGESQ-VGESQANVDMRDGVAALNLLLDNI---------RMSPKGPQSAEETFLRSLSGKPEL-------QDHNV 177
                 **********************8888877.77788899****************.........223333444444444444444332.......23344 PP

   Dynamitin 191 ityelyyapeq..eksqqlakiaelekRLaeLEklvGlssesldelsanlkprplletlsrLeaklslL..............qtahLDaierRlksll 273
                   ++ + ap+   +k +  a +a l  RLa+LE+++Gl+ +s +++     ++++l++ls+L +++++L                 hLD+++ R+++l+
  KKY19367.1 178 PSMQTNGAPATgaQKASPFAPAAALSDRLANLEASLGLTVTSATSA-----TTAVLPALSSLTSQITTLtntltpaseslsgsPNVHLDELSTRIRTLV 271
                 445555666666578888899******************9774433.....799**************9999998887777744569************ PP

   Dynamitin 274 aeldelaekreaiekadaeg...........................................qekKIneLYellkrldplspilPavldRLrsLraLH 329
                 +e ++l+++r+a+  a   +                                           q +KI +LY++l+++ +l pilP vl+RLrsL+a+H
  KKY19367.1 272 NESERLTAARKAAAAAAV-ElanarasaaaigsshsdqmtaqhkvatatntananlslsilddQTSKIRSLYQVLPTITSLHPILPTVLERLRSLSAIH 369
                 **********77754444.269***************************************************************************** PP

   Dynamitin 330 eeAaefsqtLteleeeqkeiseelkslkelLekveeslkenletvkkNvesleerikk 387
                 + A+e+++ L+e+e+ q+ +++e+ +++e+Lek+e ++k+++++ k Nve++ er+ k
  KKY19367.1 370 AGASEAATDLEEVEKGQAALDQEIIKWREGLEKLESKIKDAEQVTKGNVEVIGERLRK 427
                 ******************************************************9876 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.7     0.077   1.2e+02      57     101 ..      88     131 ..      67     149 .. 0.70
   2 ?   -0.2   0.2      0.37   5.5e+02     186     214 ..     260     288 ..     229     345 .. 0.56
   3 !   15.4   1.0   6.5e-06    0.0097      27     103 ..     359     433 ..     356     436 .] 0.87

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.077
   Golgin_A5  57 dllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeq 101
                 d+  ee +  ++++ +lr e ++l++q  +ea+  + q+ e++ +
  KKY19367.1  88 DISDEEQETDQVRLARLRREAEELKQQI-EEADGGESQVGESQAN 131
                 5556666666677777777766665554.6666666666555555 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.37
   Golgin_A5 186 lEalsteknslvlQLeRleqqikevqsea 214
                 l++lst    lv   eRl ++ k + ++a
  KKY19367.1 260 LDELSTRIRTLVNESERLTAARKAAAAAA 288
                 44555555555555555555555544433 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 6.5e-06
   Golgin_A5  27 iasLkegsgeeglesstalsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqle 103
                 ++ L++ s+ ++  ++ +++++l+e+++ + +l +e+ k ++ +e+l ++++d e+ ++ ++e + e+l+++ee+++
  KKY19367.1 359 LERLRSLSAIHA--GASEAATDLEEVEKGQAALDQEIIKWREGLEKLESKIKDAEQVTKGNVEVIGERLRKVEERMK 433
                 566665554444..34578899****************************************************986 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   1.4     0.021        32      43      69 ..      92     118 ..      67     137 .. 0.56
   2 ?    3.2   0.1     0.061        91      49      97 ..     257     305 ..     250     347 .. 0.70
   3 ?   16.0   1.9   7.1e-06     0.011      26     109 ..     353     436 .]     345     436 .] 0.87

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.021
  Jnk-SapK_ap_N  43 srneeeeaeleelreeleqLeteyere 69 
                    +++e  +++l +lr+e e+L+++ e+ 
     KKY19367.1  92 EEQETDQVRLARLRREAEELKQQIEEA 118
                    334445555555555555555555543 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.061
  Jnk-SapK_ap_N  49 eaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqek 97 
                    ++ l+el+  + +L +e er +++rk+a     e+ ++  + +   +++
     KKY19367.1 257 NVHLDELSTRIRTLVNESERLTAARKAAAAAAVELANARASAAAIGSSH 305
                    788999****************999999866666655554444444444 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 7.1e-06
  Jnk-SapK_ap_N  26 gLmPkvVkvLElLeslasrneeeeaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrele 109
                     ++P+v + L +L ++++   e  ++lee+++    L +e  + +e  ++ e ++  +e++ +++ + + e++ ++ee++++l+
     KKY19367.1 353 PILPTVLERLRSLSAIHAGASEAATDLEEVEKGQAALDQEIIKWREGLEKLESKIKDAEQVTKGNVEVIGERLRKVEERMKHLK 436
                    34556666666667778888999999*******************************************************997 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.4     0.012        17     188     219 ..      88     119 ..      68     139 .. 0.70
   2 ?    6.9   0.1    0.0017       2.6     158     260 ..     217     319 ..     200     353 .. 0.68
   3 ?    9.3   3.3   0.00032      0.47     199     278 ..     357     435 ..     321     436 .] 0.86

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.012
        Spc7 188 eaaeelesidkeeLeelreelaelkaeieekk 219
                 + ++e ++ d+ +L+ lr+e +elk++iee  
  KKY19367.1  88 DISDEEQETDQVRLARLRREAEELKQQIEEAD 119
                 44555566788888888888888888888544 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0017
        Spc7 158 LekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaerv 256
                 +++  +  +++lp+l++  ++++   ++l  a+e+l+ + +  L el  ++++l +e e++ +  +   +   el+++ +++++  s++ +++ ++ +v
  KKY19367.1 217 VTSATSATTAVLPALSSLTSQITTLTNTLTPASESLSGSPNVHLDELSTRIRTLVNESERLTAARKAAAAAAVELANARASAAAIGSSHSDQMTAQHKV 315
                 566677788999999999999999999999999999999999999999999999999887777666666666666555555555555555555444444 PP

        Spc7 257 leec 260
                   ++
  KKY19367.1 316 ATAT 319
                 4333 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00032
        Spc7 199 eeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkal 278
                 + Le lr +l++++a  +e  ++l+e+++  ++l+++i + +e  ++le++i+ ae+v++ + ++  + +++++e++k+l
  KKY19367.1 357 TVLERLR-SLSAIHAGASEAATDLEEVEKGQAALDQEIIKWREGLEKLESKIKDAEQVTKGNVEVIGERLRKVEERMKHL 435
                 5667776.48888888899999**************************************99999999999999999987 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.2      0.19   2.8e+02      19      55 ..     101     123 ..      82     150 .. 0.44
   2 ?    4.4   1.9     0.024        35      33     120 ..     206     298 ..     200     316 .. 0.70
   3 ?   -0.8   1.4      0.97   1.4e+03      36      72 ..     311     349 ..     280     366 .. 0.58
   4 ?   14.0   0.5   2.6e-05     0.039       5      54 ..     372     421 ..     369     436 .] 0.73

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.19
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II  19 laplsqnlentkeklseinrsveetnekvkdankair 55 
                 la l  + e++k++++e+++                 
  KKY19367.1 101 LARLRREAEELKQQIEEADGG--------------ES 123
                 233333333333333333333..............22 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.024
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH.....HHHHHHHHHHHHH......HHHHHHHT---EEEEES--E CS
  Laminin_II  33 lseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeasss..lsdniseikelIa......qARkaAnkikvsvsfdgdsi 120
                 l ++++s+  t   v +a+ a+  +  + + L+ ++  L + l +  +  ++s +  l +   +i+ l++      +ARkaA+  +v     + s+
  KKY19367.1 206 LANLEASLGLT---VTSATSATTAVLPALSSLTSQITTLTNTLTPASESLSGSPNvhLDELSTRIRTLVNeserltAARKAAAAAAVELANARASA 298
                 55555555554...4455555555566678899999999999999999999988887666666888888633333369999998888776666665 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.97
                 XXXXXXXXXXXXX..XXXXXXXXXXXXXXXX--TTTTTG CS
  Laminin_II  36 inrsveetnekvk..dankairdArrsvkkLeklapqLl 72 
                 ++ +v+  ++ ++   +  +++d  ++++ L +++p + 
  KKY19367.1 311 AQHKVATATNTANanLSLSILDDQTSKIRSLYQVLPTIT 349
                 333333333322221455666777777777777777665 PP

  == domain 4  score: 14.0 bits;  conditional E-value: 2.6e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II   5 aaeanetakevleqlaplsqnlentkeklseinrsveetnekvkdankai 54 
                 a+ea   ++ev++  a+l+q++ +++e l++++++++  +++ k   ++i
  KKY19367.1 372 ASEAATDLEEVEKGQAALDQEIIKWREGLEKLESKIKDAEQVTKGNVEVI 421
                 899********************************776666555333333 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.4    0.0019       2.8      44      82 ..      85     127 ..      59     135 .. 0.65
   2 ?    1.9   0.3       0.2     3e+02      65      98 ..     262     295 ..     230     327 .. 0.60
   3 ?   11.1   0.9   0.00028      0.42      53      97 ..     362     406 ..     328     415 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0019
      APG6_N  44 k....qdeeleeleeeleklekeeeelleeLkelekereelea 82 
                 +    +dee e  + +l++l++e eel ++++e++  ++++ +
  KKY19367.1  85 ElgdiSDEEQETDQVRLARLRREAEELKQQIEEADGGESQVGE 127
                 1344556666666777777777777777777777766666655 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.2
      APG6_N  65 elleeLkelekereeleaelaaleeelealeeee 98 
                 el + ++ l +e e+l a+++a+++ + +l +  
  KKY19367.1 262 ELSTRIRTLVNESERLTAARKAAAAAAVELANAR 295
                 3333344444444444444444444444443333 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00028
      APG6_N  53 eeeleklekeeeelleeLkelekereeleaelaaleeelealeee 97 
                  ++l+++++  +e+ + L+e+ek +++l++e+ + +e le+le +
  KKY19367.1 362 LRSLSAIHAGASEAATDLEEVEKGQAALDQEIIKWREGLEKLESK 406
                 467888999999*************************99999875 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.6    0.0023       3.4      24      58 ..      98     132 ..      95     146 .. 0.82
   2 ?    3.4   0.0     0.073   1.1e+02       6      36 ..     260     290 ..     259     321 .. 0.58
   3 ?    3.4   0.5      0.07   1.1e+02      36      69 ..     374     407 ..     359     409 .. 0.68
   4 ?    2.8   0.1      0.11   1.7e+02       4      16 ..     398     410 ..     396     416 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0023
        ZapB  24 qmeieeLkeeneelkeenreleeeneqlkeereaw 58 
                 q ++++L++e eelk++++e     +q  e ++++
  KKY19367.1  98 QVRLARLRREAEELKQQIEEADGGESQVGESQANV 132
                 56889999********9999986666666666655 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.073
        ZapB   6 LeqLEskiqkaidtitlLqmeieeLkeenee 36 
                 L++L ++i +++++ ++L    ++  +   e
  KKY19367.1 260 LDELSTRIRTLVNESERLTAARKAAAAAAVE 290
                 5666666666666665555444444333333 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.07
        ZapB  36 elkeenreleeeneqlkeereawqerlkkLLgkl 69 
                 e +   +e+e+   +l +e  +w+e l+kL  k+
  KKY19367.1 374 EAATDLEEVEKGQAALDQEIIKWREGLEKLESKI 407
                 5555566666777777788888888888876655 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.11
        ZapB   4 elLeqLEskiqka 16 
                 e Le+LEski+ a
  KKY19367.1 398 EGLEKLESKIKDA 410
                 679*******976 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2      0.46   6.9e+02      21      39 ..     100     118 ..      84     138 .. 0.72
   2 ?   -0.9   0.0       1.5   2.3e+03      32      48 ..     234     250 ..     218     287 .. 0.61
   3 ?   12.0   0.9   0.00014      0.21      18      75 ..     375     435 ..     364     436 .] 0.85

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.46
  Snapin_Pallidin  21 klkelrqsQeeLleqldrl 39 
                      +l+ lr++ eeL++q+++ 
       KKY19367.1 100 RLARLRREAEELKQQIEEA 118
                      4556666666666666654 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.5
  Snapin_Pallidin  32 LleqldrlnekLkelee 48 
                      L++q+++l++ L+ ++e
       KKY19367.1 234 LTSQITTLTNTLTPASE 250
                      44444444444444333 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00014
  Snapin_Pallidin  18 ldeklkelrqsQeeLleqldrlnekLkeleeaqe.aevlpdlkeya..kKLvnikkrmssl 75 
                        + l+e+++ Q +L +++ + +e L++le   + ae++++ +  +  ++L++++ rm+ l
       KKY19367.1 375 AATDLEEVEKGQAALDQEIIKWREGLEKLESKIKdAEQVTKGNVEVigERLRKVEERMKHL 435
                      567899***********************99988888888766655559999999999876 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2     0.053        79     151     177 ..      92     118 ..      62     132 .. 0.79
   2 ?    3.7   0.1     0.033        49     129     185 ..     257     316 ..     200     319 .. 0.58
   3 ?    6.0   0.5    0.0065       9.8      88     145 ..     356     413 ..     324     435 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.053
      DUF724 151 ekkeaadkeiarlkseaekleeeledv 177
                 e++e+++ ++arl+ eae+l++++e++
  KKY19367.1  92 EEQETDQVRLARLRREAEELKQQIEEA 118
                 888999999999999999999999876 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.033
      DUF724 129 eeeidelekkilelerqlallk...ekkeaadkeiarlkseaekleeeledveqeFeava 185
                 + ++del+ +i++l +++++l    +   aa+ e+a+ +++a+++  +++d  +  ++va
  KKY19367.1 257 NVHLDELSTRIRTLVNESERLTaarKAAAAAAVELANARASAAAIGSSHSDQMTAQHKVA 316
                 344557777777665555444433378888888999999999999988888766655555 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0065
      DUF724  88 kalqsrlnkLlslkdeqtklleerkklekkieeeesekrkleeeidelekkilelerq 145
                  ++++rl+ L +++   +++++ ++++ek  +  ++e  k  e +++le+ki++ e+ 
  KKY19367.1 356 PTVLERLRSLSAIHAGASEAATDLEEVEKGQAALDQEIIKWREGLEKLESKIKDAEQV 413
                 5678899999999999999999999999999999999999999999999999988764 PP

>> GvpK  Gas vesicle protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   1.6     0.041        61      37      68 ..      85     116 ..      81     120 .. 0.92
   2 ?    7.3   0.9    0.0033       4.9      26      64 ..     398     436 .]     375     436 .] 0.78

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.041
        GvpK  37 eagdlsdeeierlgetLmkleeeleelkesfg 68 
                 e gd+sdee e+    L +l++e eelk++ +
  KKY19367.1  85 ELGDISDEEQETDQVRLARLRREAEELKQQIE 116
                 6699************************9875 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0033
        GvpK  26 qllErqaiRRmeagdlsdeeierlgetLmkleeeleelk 64 
                 + lE+   +  +a++ ++ ++e +ge L+k+ee++++lk
  KKY19367.1 398 EGLEKLESKIKDAEQVTKGNVEVIGERLRKVEERMKHLK 436
                 5556666666799999*******************9986 PP

>> DUF1993  Domain of unknown function (DUF1993)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.1   3.2e+03      32      55 ..      94     117 ..      77     137 .. 0.67
   2 ?    8.1   1.1    0.0019       2.8      41     128 ..     226     314 ..     191     326 .. 0.79
   3 ?   -0.2   0.1      0.66   9.9e+02      69     108 ..     373     412 ..     350     431 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.1
                 ..HHHHHT--SSTTS--HHHHHHH CS
     DUF1993  32 idpeellearLapDMlpLsfQvqi 55 
                  + +++  arL  +  +L++Q++ 
  KKY19367.1  94 QETDQVRLARLRREAEELKQQIEE 117
                 345555566666666666666654 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0019
                 -SSTTS--HHHHHHHHHHHHHHHHCHHCT-GS----S.-SSHHHHHHHHHHHHHHHHCS-GGGHCCCCCEEEE.C..CCCCEEEEHHHH CS
     DUF1993  41 rLapDMlpLsfQvqiatdtakkavarlagkeppsledeektfadlrariaktialLesvdpekldakeekevelkl.ggkeleftgeey 128
                    p    L+ Q+ ++t+t + a + l+g++ ++l++  + +  l +  ++  a+ +++++++++ +++++ +  + ++++ ++t+++ 
  KKY19367.1 226 AVLPALSSLTSQITTLTNTLTPASESLSGSPNVHLDELSTRIRTLVNESERLTAARKAAAAAAVELANARASAAAIgSSHSDQMTAQHK 314
                 45566789*************************99999999999999999999999999999999999888887776556666665554 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.66
                 T-GS----S.-SSHHHHHHHHHHHHHHHHCS-GGGHCCCC CS
     DUF1993  69 gkeppsledeektfadlrariaktialLesvdpekldake 108
                 +++++ le+ ek  a l + i k  + Le+++++  da++
  KKY19367.1 373 SEAATDLEEVEKGQAALDQEIIKWREGLEKLESKIKDAEQ 412
                 3455566777888888888888888888877766555444 PP

>> SOGA  Protein SOGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.4      0.16   2.4e+02      55      87 ..      85     117 ..      62     134 .. 0.66
   2 ?   -1.3   0.1       3.4     5e+03      70      75 ..     290     295 ..     257     330 .. 0.51
   3 ?    9.3   1.6    0.0016       2.4      23      81 ..     379     435 ..     374     436 .] 0.88

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.16
        SOGA  55 eeassdsskeaelkeeLklarlqineLsgkvvk 87 
                 e ++ + +++++ +++L   r +++eL+ ++ +
  KKY19367.1  85 ELGDISDEEQETDQVRLARLRREAEELKQQIEE 117
                 334444445556666777777788888877765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.4
        SOGA  70 eLklar 75 
                 eL  ar
  KKY19367.1 290 ELANAR 295
                 222222 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0016
        SOGA  23 lseleeenkqlteeLnkyksklgeeessleeeeeassdsskeaelkeeLklarlqineL 81 
                 l e+e+ +  l +e+ k++ +l++ es+++++e+ +++  + + + e+L+ +++ +++L
  KKY19367.1 379 LEEVEKGQAALDQEIIKWREGLEKLESKIKDAEQVTKG--NVEVIGERLRKVEERMKHL 435
                 789**************************997666665..578899******9999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1288  (0.0718389); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.48
# Mc/sec: 2723.82
//
Query:       KKY19368.1  [L=545]
Description: putative ubiquitin c-terminal hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-40  136.9   0.0    1.6e-37  129.4   0.0    2.9  2  UCH            Ubiquitin carboxyl-terminal hydrolase
    3.8e-21   76.0   1.6    1.5e-14   54.4   0.0    2.6  3  UCH_1          Ubiquitin carboxyl-terminal hydrolase
     0.0039   16.7   1.7       0.18   11.2   0.7    2.8  3  Peptidase_C98  Ubiquitin-specific peptidase-like, SUMO isopep
  ------ inclusion threshold ------
       0.53    9.4  10.1       0.97    8.6  10.1    1.4  1  DUF1682        Protein of unknown function (DUF1682)
        6.7    5.1  17.0         10    4.5  17.0    1.2  1  Borrelia_P83   Borrelia P83/100 protein
          7    5.1  14.0         11    4.5  14.0    1.2  1  Macoilin       Macoilin family


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.4   0.0   5.3e-41   1.6e-37       4     257 .]       2     308 ..       1     308 [. 0.74
   2 ?   -1.4   0.3      0.44   1.3e+03      39      69 ..     420     450 ..     385     504 .. 0.60

  Alignments for each domain:
  == domain 1  score: 129.4 bits;  conditional E-value: 5.3e-41
                 S-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC.......................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................................................... RF
         UCH   4 sNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkke.......................................................... 44 
                 +N+GntCy+ns+lQcL+  +++r+ +l+  ++++ ++ +                                                            
  KKY19368.1   2 ENFGNTCYCNSILQCLYYSAPFRENVLNFPKRSTAESVNAAaakatpripsppppnlspgkkspnpsarnpgapvtnpnqkpdekdsadykkkqalfvg 100
                 8**********************5555544444444444345788888888888888888888888888887777777666666666666665555555 PP

                 ...-.TT.TTS.TTH.............HHHHHHHHHHHHH.SH-CCEE--HHHHHHHHHHSGGGTSSSTCEHHHHHHHHHHHHHHHHCCHCCCHHHHH CS
                 ...xxxxxxxxxxxx.............xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH  45 ...lnesnplgkkge.............lakalkdlfkell.kskskavsPkklkktlsklaksfsgykqqDaqEflaflLdqlhedlnrevaeekwkk 126
                    +                        l+++lkd+f++++  +++  v            +  +  +   D +  ++ +L +++e+            
  KKY19368.1 101 pvlN----------MsygnasgygmqdsLFTSLKDIFEAVVvSQSRIGVRD----------EAFLDLSVDLDQHSSVTSCLRRFSEEEML--------- 170
                 5541..........0444444444444499999999988883222222222..........2234456677999999999*999998877......... PP

                 HCCCTTSHHHHHH-E..EEEEEEEEEEB-SEEEEEEESEEETEE...EEE--SEEB--SEEE-GGGBSS-BTTS-TCS-BEEEEEEEEEES.CTTSEEE CS
                 xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
         UCH 127 hlkrndslitdlfeg..qlksklklkrlPeiLiihlkRfsynss...ksKlntkvefpeeldlssylaeekkkkteekkkYeLiavvvHsG.slssGHY 219
                  ++rn ++  d+++g  + ++++k+krlP+iL +hlkRf+y+++    +Kl +kv +p  l l +++++ ++++    + YeL+avvvH+G ++ +GHY
  KKY19368.1 171 -CERN-KFHCDNCGGlqEAEKRMKIKRLPKILALHLKRFKYTEDlqrLQKLFHKVVYPYHLRLFNTTDDAEDPD----RLYELYAVVVHIGgGPYHGHY 263
                 .4444.4555555552235569*******************8888899***************99888666666....45******************* PP

                 EEEEECTTTTEEEEEETTEEEEE-HHCCCTT.........CEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxx RF
         UCH 220 vayiknekngkWykydDetvkevkeeeevls.........sayiLfY 257
                 v++ik +++  W+ +dDe v++v+++  v++          ay+LfY
  KKY19368.1 264 VSIIK-TEDRGWLLFDDELVEPVDKS-YVRNffgdrpglaCAYVLFY 308
                 *****.66777*************87.7888888899999******* PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.44
                 TCCCCC-.TT.TTS.TTH............HHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxx RF
         UCH  39 srnkkelnesnplgkkge............lakalkdlfkell 69 
                 ++n+k            +            l k+ +dl ++l 
  KKY19368.1 420 EKNEK------------QarkeaeirqreaLKKQEADLKAALA 450
                 11111............12222333333335555555555554 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.2   1.2e-07   0.00036       3      29 ..       1      28 [.       1      38 [. 0.86
   2 !   54.4   0.0   4.9e-18   1.5e-14     177     320 .]     155     282 ..     102     282 .. 0.76
   3 ?   -2.0   0.1       0.7   2.1e+03     269     269 ..     416     416 ..     314     516 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.2e-07
                xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
       UCH_1  3 LEnhivnsYlNslLQvlyfipplr.nla 29
                +En  +++Y+Ns+LQ+ly+  p+r n++
  KKY19368.1  1 MENFGNTCYCNSILQCLYYSAPFReNVL 28
                688889******************6665 PP

  == domain 2  score: 54.4 bits;  conditional E-value: 4.9e-18
                 xxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 177 vtfasilkssler...ekttrawCekCkryqpteqrktvknlPpvLalnakle.eeeelelwkt...knwlpleiklsldedknleeklkeerekakae 268
                 +++ s+l+++ e+    + ++  C++C   q  e+r ++k+lP++Lal++k++  +e+l+ +++   k + p +++l               +++++ae
  KKY19368.1 155 SSVTSCLRRFSEEemlCERNKFHCDNCGGLQEAEKRMKIKRLPKILALHLKRFkYTEDLQRLQKlfhKVVYPYHLRL--------------FNTTDDAE 239
                 5666777777766333357899*****************************98555545544443223333333333..............33334456 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 269 keikvYeLqsvvvhigdskesghLvslvkvaekelerdppesqWylFNDflV 320
                 +  + YeL +vvvhig +  +gh+vs++k +         +  W+lF+D lV
  KKY19368.1 240 DPDRLYELYAVVVHIGGGPYHGHYVSIIKTE---------DRGWLLFDDELV 282
                 77899***********7778*********63.........348******876 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.7
                 x RF
       UCH_1 269 k 269
                 +
  KKY19368.1 416 E 416
                 1 PP

>> Peptidase_C98  Ubiquitin-specific peptidase-like, SUMO isopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.3   3.9e+03       6      32 ..       3      29 ..       2      39 .. 0.80
   2 !   11.2   0.7   6.2e-05      0.18     169     217 ..     176     225 ..     154     229 .. 0.85
   3 ?    3.0   0.0      0.02        60     226     249 ..     257     281 ..     241     293 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.3
  Peptidase_C98  6 nkenlCWLDsllvalvhletlkkalse 32
                   n  n C+ +s+l  l ++  +++++ +
     KKY19368.1  3 NFGNTCYCNSILQCLYYSAPFRENVLN 29
                   67799**********999999988755 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 6.2e-05
  Peptidase_C98 169 apCnkCkk.keqrrkmvlekvpsvlmlHFveGLphndlekysfefegkqY 217
                      C++C   +e +++m+++++p++l+lH      ++dl++++  f++  Y
     KKY19368.1 176 FHCDNCGGlQEAEKRMKIKRLPKILALHLKRFKYTEDLQRLQKLFHKVVY 225
                    57999*863677899**************999999999999999988877 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.02
  Peptidase_C98 226 kkelkHFvtwirnsdgsWlecDD.L 249
                       + H+v+ i+++d  Wl +DD L
     KKY19368.1 257 GPYHGHYVSIIKTEDRGWLLFDDeL 281
                    44568****************9934 PP

>> DUF1682  Protein of unknown function (DUF1682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  10.1   0.00032      0.97     238     316 ..     385     461 ..     352     466 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00032
     DUF1682 238 lklvlrliDklakraklrpevlkklkktReevekklkkeaeeekaEeaqekkeeekkkereeklaklspeeqrKyeeke 316
                 ++ +++l  +++ +   +++ ++k +k  + +ek+ +k+++++++E+   +++e+ kk++++  a l + +  K+ee  
  KKY19368.1 385 FQSAPQLSHSVT-SPGQSKKEKAKEEKDKKAAEKEREKNEKQARKEAEI-RQREALKKQEADLKAALAASKVSKAEEDR 461
                 566666666666.445577778888888888888888888888887666.45555555555567789999999988865 PP

>> Borrelia_P83  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  17.0    0.0034        10     213     278 ..     401     467 ..     393     531 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0034
  Borrelia_P83 213 kraqvlkeeldkkqkdadkakkkadtaednadkqrkevreklqea.knlpepadvsskkedkkva.ee 278
                    +++++kee dkk+ + ++ k++ + a+++a+++++e+ +k++++ k +   ++vs+++ed++v  e 
    KKY19368.1 401 SKKEKAKEEKDKKAAEKEREKNEKQ-ARKEAEIRQREALKKQEADlKAALAASKVSKAEEDRRVTsEA 467
                   4677799999999999887776655.677888888888888887515566777899999999995322 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  14.0    0.0036        11     248     374 ..     402     528 ..     358     541 .. 0.41

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0036
    Macoilin 248 lklpeleyrekkksakssrsdskkkhehn...esvdsklqekeymenkskskrlsksessgsesellveesvkskssssssssn.........knskka 334
                 +k    e+++kk ++k++++++k+ ++++   ++   k+qe++ ++  + sk ++ +e    +se   +e+++                    k+ +++
  KKY19368.1 402 KKEKAKEEKDKKAAEKEREKNEKQARKEAeirQREALKKQEADLKAALAASKVSKAEEDRRVTSEAPSKENAT----------GglsrfkrgsKSISTK 490
                 1111112222222222222222222222222233333333333333333333333332223333333333222..........1333332221444444 PP

    Macoilin 335 sagsagssnssskkhsessksvtsssssknskkqklpaGk 374
                  ++ + s ++s+   se s+s+  s + +++kk   ++G+
  KKY19368.1 491 LGSVVRSDKTSATASSEGSQSTHASETLEKDKKL--SFGN 528
                 4444444455555555555555555444444443..3343 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2281  (0.127224); expected 358.6 (0.02)
Passed bias filter:                      795  (0.0443416); expected 358.6 (0.02)
Passed Vit filter:                       163  (0.00909142); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.93u 0.38s 00:00:01.31 Elapsed: 00:00:00.54
# Mc/sec: 3026.70
//
Query:       KKY19369.1  [L=420]
Description: putative cation efflux family protein family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-13   50.9  11.5      2e-13   50.5  11.5    1.1  1  Cation_efflux   Cation efflux family
  ------ inclusion threshold ------
        3.5    8.4   6.9       0.51   11.0   0.3    2.7  2  Multi_Drug_Res  Small Multidrug Resistance protein


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5  11.5   2.3e-17     2e-13      11     199 .]     125     330 ..     117     330 .. 0.90

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 2.3e-17
  Cation_efflux  11 lalvelivglltnSlalladafhslsdlvsllllllalklsr....kppderfpfGygrlevlgalvsgllllglavfllleaiqkli........ 94 
                    ++++ +i++   +Sla++a +   + d ++ ll++++ +ls+    k ++ r+pfG++r+evl+++  ++ll ++++ ll+++++++         
     KKY19369.1 125 MFVAAYILWSAHGSLAMTALSHLLFYDSLGALLCVVVDVLSNfevwKRSSLRHPFGLERVEVLAGFAMSVLLAFMGADLLSHNFKHATegmghesh 220
                    88889999999999999999999999999999999999977645556689********************************************** PP

  Cation_efflux  95 ....kegereihaglalvvalvslvvnlalllilrragrkl......rsaalkaaalhvlgDaltslgvlvsalvillfnlksgplaDpvasllig 180
                        +  +    ++l++++a++s++v+ ++l  + r g+++      + +++ ++  h l+ ++++l  l+ +l  +++   s  + D ++s+ ++
     KKY19369.1 221 rahaHDRVSPGAIDLTVLLAIGSTLVSAIGLKNHARIGKATrfgafeSLPSVLSNPSHFLTLSCSTLLLLLPLLSLKMY---S--WMDKALSCSMA 311
                    **9999999999**********************************999999999999999888888888877777775...5..9********** PP

  Cation_efflux 181 liilysalkllkeslseLl 199
                    + +++ +++l+k   s+Ll
     KKY19369.1 312 IAMIILGFRLVKALGSMLL 330
                    ************9999987 PP

>> Multi_Drug_Res  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   5.7e-05      0.51      57      85 ..     128     156 ..     122     164 .. 0.86
   2 ?   -1.0   1.4      0.33   2.9e+03       7      24 ..     238     255 ..     233     330 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.7e-05
                     -HHHHHHHHHHHHHHHHHHHHH------- CS
  Multi_Drug_Res  57 vAYavwsGiGtvlivlvgillfgeslslk 85 
                      AY +ws+ G ++++++++llf +sl + 
      KKY19369.1 128 AAYILWSAHGSLAMTALSHLLFYDSLGAL 156
                     69********************9998765 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.33
                     HHHHHHHHHHHHH----- CS
  Multi_Drug_Res   7 vlAillevvgailLklse 24 
                     +lAi +  v ai Lk  +
      KKY19369.1 238 LLAIGSTLVSAIGLKNHA 255
                     556666666666666422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.52
# Mc/sec: 2432.94
//
Query:       KKY19370.1  [L=267]
Description: putative translation initiation factor if3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-09   36.1   0.1    8.4e-09   35.3   0.1    1.4  1  IF3_C     Translation initiation factor IF-3, C-terminal doma
    7.6e-06   25.7   1.3    1.3e-05   24.9   1.3    1.5  1  mIF3      Mitochondrial translation initiation factor
     0.0022   18.2   0.0     0.0058   16.9   0.0    1.8  1  IF3_N     Translation initiation factor IF-3, N-terminal doma
  ------ inclusion threshold ------
       0.85    9.7   5.1       0.61   10.1   1.0    2.2  2  DUF4570   Domain of unknown function (DUF4570)


Domain annotation for each model (and alignments):
>> IF3_C  Translation initiation factor IF-3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   1.9e-12   8.4e-09       3      73 ..     180     251 ..     178     261 .. 0.86

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.9e-12
                 EEEEEEESS--HHHHHHHHHHHHHHHHHT-EEEEEEE--S-TT.SHHHHHHHHHHHHHHHTTTTEEEEEEEE CS
       IF3_C   3 vKEiklrpkidehDlevKlknarkFLeegdkvKvtlrfrGRei.ahkelgkevleriaeeleevakvekkpk 73 
                  KE+ ++  i+++Dl  Kl++++ F+++g++v + l  r R   a  e +++vl +i ++++e++ ve +p 
  KKY19370.1 180 SKELEVNWAISQNDLRLKLQQLEGFVSQGKRVVIVLAGRRRGRkATAEEAEDVLLQIRQKVREIGAVEGRPM 251
                 59*******************************999766554314567899*****************9985 PP

>> mIF3  Mitochondrial translation initiation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   1.3   2.9e-09   1.3e-05      97     171 ..     152     223 ..      76     229 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 2.9e-09
        mIF3  97 akqkekeLlelGvakkklekkekaekkksslKeikvsWqIsldDLkkQKanEIekllkkgekvliyiddkkslns 171
                  ++k   L+++   +k+ +++ ka  + ++ Ke++v W Is++DL+  K + +e  +++g++v+i+++ +++  +
  KKY19370.1 152 MERKALILQRMERDSKA-KERAKAT-RAKASKELEVNWAISQNDLRL-KLQQLEGFVSQGKRVVIVLAGRRRGRK 223
                 55666667777766666.4445544.57899**************87.999****************99887554 PP

>> IF3_N  Translation initiation factor IF-3, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.3e-06    0.0058       2      63 ..      74     161 ..      73     171 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.3e-06
                 TTS--SSEEEEE-SSS........................-EEE.EEEHHHHHHHHHHHTSEEEEEE.SSSSS-EEEEE-HHHHHHHH CS
       IF3_N   2 NeqIrarevrlvdedG........................eqlG.vistreAlrlaeekgldLVevs.pnaepPVcrimdygkfrYeq 63 
                 N+qI  + v +   +                         e +G  +  ++  ++ +e +l LV++    ++ PVc+im+ ++   + 
  KKY19370.1  74 NDQIASQRVYVLHPETndldeprdrkkllrmmgdrqrlqdEGIGiFMADEQDAKRKDEDELLLVQMGiGPEQIPVCKIMERKALILQR 161
                 88888888888887744777777787777777777777666667557777778899999******99544599******999874433 PP

>> DUF4570  Domain of unknown function (DUF4570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.2       0.1   4.7e+02      14      42 ..      73     101 ..      72     114 .. 0.76
   2 ?   10.1   1.0   0.00014      0.61      18      49 ..     151     182 ..     149     214 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.1
     DUF4570  14 kheeiLaqRalLLqqmeseledqkkkkas 42 
                 k ++i +qR   L+   ++l + + +k+ 
  KKY19370.1  73 KNDQIASQRVYVLHPETNDLDEPRDRKKL 101
                 56889999*99999998888777665554 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00014
     DUF4570  18 iLaqRalLLqqmeseledqkkkkasqaeaska 49 
                 i+ ++al+Lq+me + + ++++ka++a+ask 
  KKY19370.1 151 IMERKALILQRMERDSKAKERAKATRAKASKE 182
                 8999************************9983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       894  (0.0498633); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1706.88
//
Query:       KKY19371.1  [L=503]
Description: putative nucleoside diphosphatase gda1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-96  324.1   0.0    1.4e-96  323.8   0.0    1.0  1  GDA1_CD39  GDA1/CD39 (nucleoside phosphatase) family
  ------ inclusion threshold ------
       0.25   10.7   0.0       0.45    9.9   0.0    1.4  1  Ppx-GppA   Ppx/GppA phosphatase family


Domain annotation for each model (and alignments):
>> GDA1_CD39  GDA1/CD39 (nucleoside phosphatase) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.8   0.0  1.5e-100   1.4e-96       8     406 ..      66     488 ..      59     495 .. 0.89

  Alignments for each domain:
  == domain 1  score: 323.8 bits;  conditional E-value: 1.5e-100
   GDA1_CD39   8 ekygiviDAGSsgsrlhvykwkde..kesllqivkliee......vkklePGlSsfekkpeeaaeylkpllelaeeviPeekrsetpvlikATAGlRLl 98 
                 ++y+++iDAGS+gsr+hvyk+++         ++ + ee       +  + GlSs+++++e aa++l+ l+++a +++P e +s+tpv++kATAGlRLl
  KKY19371.1  66 VQYALMIDAGSTGSRIHVYKFNNCgpT-----PELEHEEfkmtekKEGGSSGLSSYKSDAEGAAKSLDILMDVAVQTVPDEYKSCTPVAVKATAGLRLL 159
                 68*******************444331.....22222332221114444689*********************************************** PP

   GDA1_CD39  99 keekkekilkalrnklkklsefkved...qgiriidGeeEGiYgWiaiNYllGkfnkeapevskqetvgvlDlGGaStQiafepq.eese...iaekve 190
                   e ++kil a+r+ l+ +++f+v      g++i++Ge EG+Y+Wi++NYllGk++      +++ t++++DlGG+StQi+f+p+ +e+    + ek  
  KKY19371.1 160 GPEMSDKILAAVRERLETVYPFPVVSkeaGGVEIMKGEDEGVYAWITTNYLLGKIGGP----DHTPTAAIFDLGGGSTQIVFQPTfKEAIdggMPEKLT 254
                 ***********************98755678*************************99....589********************86554111457788 PP

   GDA1_CD39 191 dieelklqekledkkyklyvtsfLgyGanealrkklaklikkasee..........vlkdpClprglektvevkdle........fkqfaikgtgnyeq 271
                 d+ ++k ++++ +++++ly++s+LgyG+  a++++  + i+k  +            + + C+ +g++k+++v+             +++ ++++  +q
  KKY19371.1 255 DG-DHKYELSFGGRDFTLYQHSHLGYGLMSAREAVHRSIIEKMYKAhgtdttwltsPIPNACIAPGYKKKINVTLQSghplgenvEVTMVGPEESLPAQ 352
                 88.6*************************************99999999***99999999***********99877688999987667888999999** PP

   GDA1_CD39 272 CrksikellnknakCkaeeClfngvfapsidllqklfgaseyfYtvsdvlklggek.....vklekltealrkfCk..knweeikaeskkskeksisee 363
                 Cr++ + +l k+a+Ck  +C+fngv++ps   l+k+f   e+ Y++s++++++++      ++l +l + + ++C+  k+w+  ++++++ +e+  +  
  KKY19371.1 353 CRALAEGILYKDAECKLAPCSFNGVHQPS---LDKTFSR-EDVYIFSYFFDRTQPLgmpesFTLRELHDLTAEVCAgeKHWNR-FSGIEGALEELQDRP 446
                 *****************************...8888864.7889999999999998888899*************98788887.789**********99 PP

   GDA1_CD39 364 eaCfkgayvlslLhdGfdldktveelqsvekiaekelgWtLGa 406
                 e C++++++ +lLh+G++++ + +e+++ +ki+++elgW+LGa
  KKY19371.1 447 EWCLDLSFMNALLHTGYEMPIE-REVKIAKKIKGNELGWCLGA 488
                 *********************9.*******************8 PP

>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0     5e-05      0.45      87     129 ..     190     238 ..     140     245 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 5e-05
                 -EEEE-HHHHHHHHHHHHHHHT.-.....--SSEEEEEEETTEEEEEEE CS
    Ppx-GppA  87 kveiisgeeEarliylgvvssl.l.....ekgrglviDiGGGStElvlg 129
                  vei++ge+E+ ++     + l +     ++    + D+GGGSt++v+ 
  KKY19371.1 190 GVEIMKGEDEGVYAWITTNYLLgKiggpdHTPTAAIFDLGGGSTQIVFQ 238
                 6999999999988765444333221122266677889*********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.51
# Mc/sec: 2977.81
//
Query:       KKY19372.1  [L=196]
Description: hypothetical protein UCRPC4_g04532 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-17   64.6   0.1      1e-17   64.6   0.1    2.5  2  DUF4598   Domain of unknown function (DUF4598)


Domain annotation for each model (and alignments):
>> DUF4598  Domain of unknown function (DUF4598)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   8.6       0.5   8.9e+03      68      82 ..      42      56 ..       9      91 .. 0.48
   2 !   64.6   0.1   5.8e-22     1e-17       1      82 [.      97     173 ..      97     194 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.5
     DUF4598 68 ssddedsesdekees 82
                + dd+d++s++  +s
  KKY19372.1 42 EGDDDDETSSSGASS 56
                111111111111111 PP

  == domain 2  score: 64.6 bits;  conditional E-value: 5.8e-22
     DUF4598   1 LlsrlkaFLPqlkaaNkkLekeiaagkvadleidevdddeeqyIEMnLgLGvleekrdee.....sesdsdsssddedsesdekees 82 
                 L+srl++FLPql++aN+  e+  a       ++d+v ddee+yIEMnLgLGvl++ ++ +     +      ++dd++s+++++ ++
  KKY19372.1  97 LRSRLSSFLPQLRDANAAWERGEA-----VPRLDHVPDDEENYIEMNLGLGVLKQVKEPSdgiktT-----LTDDDSSSDAESEGSE 173
                 79**************99888765.....689***********************88888455542.....3333333333322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1337.40
//
Query:       KKY19373.1  [L=649]
Description: hypothetical protein UCRPC4_g04533 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-25   90.3   0.0    1.1e-25   90.3   0.0    2.0  2  COMPASS-Shg1  COMPASS (Complex proteins associated with Set1p
  ------ inclusion threshold ------
       0.24   11.9   0.9       0.73   10.3   0.9    1.8  1  DMRT-like     Doublesex-and mab-3-related transcription facto


Domain annotation for each model (and alignments):
>> COMPASS-Shg1  COMPASS (Complex proteins associated with Set1p) component shg1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.3   0.0   1.2e-29   1.1e-25       2     101 ..      49     149 ..      48     150 .. 0.97
   2 ?   -3.5   1.0       1.9   1.7e+04      56      56 ..     198     198 ..     163     238 .. 0.58

  Alignments for each domain:
  == domain 1  score: 90.3 bits;  conditional E-value: 1.2e-29
  COMPASS-Shg1   2 LveefKkkGeFDklRkeiledfkeseaeqnlrkkveeivesevkkdpsllfknrgkaaaliegeidrsdvykkleegvdrivdqdlq.eepklreii 97 
                   L+ +fKkkG +D+lRk+i++d+++s a+ +l + +++++e+e+++d++ll+k+rgkaa+lieg++dr++vyk++e+++dr++  +l+    ++rei+
    KKY19373.1  49 LLYTFKKKGGYDTLRKQIWADYTSSGAKSTLVELINDVAENEIDNDSNLLSKERGKAATLIEGAVDRKGVYKTVENEIDRLLAAHLDhVLGSVREIR 145
                   8899***********************************************************************************99999****9 PP

  COMPASS-Shg1  98 keei 101
                   ++e+
    KKY19373.1 146 RAEV 149
                   9998 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.9
  COMPASS-Shg1  56 g 56 
                   +
    KKY19373.1 198 A 198
                   1 PP

>> DMRT-like  Doublesex-and mab-3-related transcription factor C1 and C2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.9   8.1e-05      0.73      48      98 ..     397     450 ..     383     472 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 8.1e-05
   DMRT-like  48 sEwqrklEAAeALlaLrdSpqappdsisllqpcgpp............apagdrglqspspsl 98 
                 +  qr +EAAe L aL+d +  +++  s+ +  +                        p++  
  KKY19373.1 397 QRKQREKEAAEYLKALKDGKIDATSHQSRSKSRERDdnprkrreefsqS---------PERKR 450
                 56799**************998866666665544332222333333333.........33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3015  (0.168163); expected 358.6 (0.02)
Passed bias filter:                      735  (0.040995); expected 358.6 (0.02)
Passed Vit filter:                       304  (0.0169558); expected 17.9 (0.001)
Passed Fwd filter:                       110  (0.00613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.61u 0.43s 00:00:03.04 Elapsed: 00:00:00.68
# Mc/sec: 2860.93
//
Query:       KKY19374.1  [L=95]
Description: putative nadh-ubiquinone oxidoreductase 14 kda [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.50
# Mc/sec: 575.57
//
Query:       KKY19375.1  [L=445]
Description: putative elongation factor tu [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-58  196.5   0.4    4.1e-58  196.1   0.4    1.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
      2e-22   79.6   0.0    4.8e-22   78.4   0.0    1.7  1  GTP_EFTU_D3  Elongation factor Tu C-terminal domain
    9.1e-18   64.4   1.8    2.1e-17   63.3   1.8    1.6  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    8.8e-06   25.8   0.0    1.7e-05   24.8   0.0    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0043   16.7   0.8      0.027   14.1   0.1    2.1  2  cobW         CobW/HypB/UreG, nucleotide-binding domain
  ------ inclusion threshold ------
      0.017   15.0   0.2       0.05   13.5   0.1    1.8  2  RsgA_GTPase  RsgA GTPase
      0.019   14.7   0.4        5.5    6.7   0.0    2.3  2  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
       0.14   11.5   0.3       0.55    9.5   0.3    1.8  1  Gtr1_RagA    Gtr1/RagA G protein conserved region


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.1   0.4   1.8e-61   4.1e-58       1     193 [.      49     242 ..      49     243 .. 0.94

  Alignments for each domain:
  == domain 1  score: 196.1 bits;  conditional E-value: 1.8e-61
                 TCEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEE CS
    GTP_EFTU   1 krirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavl 99 
                 k+++nig+ighvDhGKtTLt +++++  +   ++  +    ++D+++eEr+rgiTi++a+i+++  t++++++++D+PGH+d++k++i+g++ +Dga++
  KKY19375.1  49 KPHVNIGTIGHVDHGKTTLTAAITKRQAEKGYARFLEY--GAIDKAPEERKRGITISTAHIEYQ--TDNRHYAHVDCPGHADYIKNMITGAASMDGAIV 143
                 579*********************98888777666664..35**********************..********************************* PP

                 EEETTTBSTHHHHHHHHHHHHTTTE.EEEEEESCGST.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTB..........THHHHHH CS
    GTP_EFTU 100 vvdaveGvepqteevlrlalkegvp.iivfiNKmDrl.kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkge..........gvktlle 186
                 vv+a++G +pqt+e+l la+++gv+ i+vf+NK+D + ++++ e+ve+  ++l      l++y+++ge ++p++fgSal +            +++ll+
  KKY19375.1 144 VVAASDGQMPQTREHLLLARQVGVEnIVVFVNKVDAIeDKDMLELVEMEMREL------LTQYKFDGE-NTPIIFGSALCALenrqndigvdRIDELLQ 235
                 *************************************99999999999999**......9*******6.***********998888988888888**** PP

                 HHHHHSH CS
    GTP_EFTU 187 alvellp 193
                 a+++++p
  KKY19375.1 236 AVDTWIP 242
                 ***9998 PP

>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0   2.1e-25   4.8e-22       1     111 [.     340     437 ..     340     438 .. 0.95

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 2.1e-25
                  --EEECCEEEEEEESSS.....SS-BSTT-EEEEESSS-EEEEEEEEEEECCSSTTSB-BSS-SSCCSTT-CEEEEEEECCEEEE--TTTHCCCCEEE CS
  GTP_EFTU_D3   1 sikphtkfeAqvyileke...rhtpitagYrpvlyirtadvtgkvveLlskldkktekvsekkpefvkpGdnvivevelikpialekgseypqlGrFa 95 
                  sik+ ++f  ++y+l+ e   r+t + a+Yrp+++irtad++   v+        +e+v  +k ++++pGdnv++ ++  +pia e g+      rF+
   KKY19375.1 340 SIKASNQFLVSMYVLTPEeggRRTGFGANYRPQMFIRTADEAS-NVDW-------PEGV--DKDKMAMPGDNVEMVLTSHRPIAAEAGQ------RFN 421
                  68999************99**********************99.6777.......8888..789*************************......*** PP

                  EECTTCEEEEEEEEEE CS
  GTP_EFTU_D3  96 iReggrTvaaGvvtei 111
                  iReggrTva+G +t++
   KKY19375.1 422 IREGGRTVATGLITRV 437
                  **************98 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   1.8   9.2e-21   2.1e-17       1      73 [.     266     335 ..     266     336 .. 0.96

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 9.2e-21
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  Gtva grv++G+lkk+ e++++g  +t   +i+t+++ +etf++ +de +ag+n G+++++++ ed +++G+++
   KKY19375.1 266 GTVASGRVERGVLKKDTEIELVGhGTT---PIKTKVTDIETFKKSCDESRAGDNSGLLLRGVKRED-VKRGMVI 335
                  9********************997777...888*********************************.******9 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   7.7e-09   1.7e-05       2      99 ..      54     161 ..      53     200 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 7.7e-09
                 EEEEESTTSSHHHHHHHHHT................STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg................ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvd 84 
                 ++ +G+   GK+tL  a+t+                +ka  ++k g T+ + +++++++++++  vD+pG  +       +++ +    ++d +++vv 
  KKY19375.1  54 IGTIGHVDHGKTTLTAAITKrqaekgyarfleygaiDKAPEERKRGITISTAHIEYQTDNRHYAHVDCPGHAD------YIKNMITGAASMDGAIVVVA 146
                 889****************7777778888887775559999****************999**********322......45555555556788888888 PP

                 TTTTCSHHHHHHHHH CS
    MMR_HSR1  85 aseeklkpldeelee 99 
                 as++++ + +e+l  
  KKY19375.1 147 ASDGQMPQTREHLLL 161
                 774444444443333 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.17   3.9e+02       7      29 ..      58      80 ..      53      83 .. 0.78
   2 !   14.1   0.1   1.2e-05     0.027     104     172 ..     130     199 ..     119     202 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.17
                ESTTCCHHHHHHHHHCT--SS-E CS
        cobW  7 GflGsGKTtLlnhllenraglkl 29
                G +  GKTtL  ++++++a++ +
  KKY19375.1 58 GHVDHGKTTLTAAITKRQAEKGY 80
                55667********9988777655 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.2e-05
                 HHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEE.EE-HHHHCHC..HHHHHHHHHHHHTT CS
        cobW 104 eelksdltldavvavvDaknleaeeekieekaedqlaaadllv.lnKtDlldeeallekleerlrqlnpe 172
                 + ++ ++ +d+ ++vv a+  +  +++++ ++ +q+ + +++v +nK+D ++++++le +e ++r+l ++
  KKY19375.1 130 NMITGAASMDGAIVVVAASDGQMPQTREHLLLARQVGVENIVVfVNKVDAIEDKDMLELVEMEMRELLTQ 199
                 567788999**********99999**************9987748*********9999999999988665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.93   2.1e+03     105     123 ..      57      75 ..      43     126 .. 0.77
   2 ?   13.5   0.1   2.2e-05      0.05      13      75 ..     135     196 ..      94     210 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.93
                  ECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase 105 vGqSGvGKStLinallpel 123
                  +G+   GK+tL  a++ ++
   KKY19375.1  57 IGHVDHGKTTLTAAITKRQ 75 
                  4666679999998888763 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.2e-05
                  EES--EEEEEEESTTTT--HHHHHHHHHHHHHTT-.EEEEEEE-GGG--HHHHHHHHHHHHHHT CS
  RsgA_GTPase  13 vaNvdqllivvslkepelslnlldrfLvlaeekgi.epvivlnKiDlleeeeeleelkeeleal 75 
                  +a +d +++vv+++  + ++ +    L+la + g+ ++v+ +nK+D +e+++ le ++ e+++l
   KKY19375.1 135 AASMDGAIVVVAAS--DGQMPQTREHLLLARQVGVeNIVVFVNKVDAIEDKDMLELVEMEMREL 196
                  8999*********9..44455566777788888884677789**********777777777766 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0025       5.5       6      25 ..      56      75 ..      52      87 .. 0.86
   2 ?    5.8   0.1    0.0049        11      34     117 ..     112     195 ..     101     204 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0025
   PduV-EutP  6 liGkvgsGKttLtqalkgee 25
                 iG+v+ GKttLt a+++++
  KKY19375.1 56 TIGHVDHGKTTLTAAITKRQ 75
                69*************98765 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0049
   PduV-EutP  34 iefsdeviDtPGeylenrklysalivtsaeadvialvqdateee..svfppg..fasvfnkeviGiitkidlaedeenieaveelLks 117
                  + + + +D+PG       + + +i+ +a+ d   +v++a++ +  ++       ++v   +++  + k+d  ed++ +e ve ++++
  KKY19375.1 112 DNRHYAHVDCPGH----ADYIKNMITGAASMDGAIVVVAASDGQmpQTREHLllARQVGVENIVVFVNKVDAIEDKDMLELVEMEMRE 195
                 4555677999995....34444445555554443333333333300222222113344556778889*************99988865 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3   0.00025      0.55      32     145 ..      99     201 ..      90     216 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00025
   Gtr1_RagA  32 gatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletlkeilealrqyspeakvfvlihKmDliqedere 130
                 g+ti++ + e + ++n +   +Dc+G  ++++++++  +    ++ g+++ V  ++      ++ + +e l  +rq+  e ++ v+++K+D i+++   
  KKY19375.1  99 GITISTAHIEYQ-TDNRHYAHVDCPGHADYIKNMITGAA----SMDGAIVVVAASD-----GQMPQTREHLLLARQVGVE-NIVVFVNKVDAIEDKDML 186
                 667777666663.55666667788888888888754433....3334444443333.....4455566666677777655.688*************** PP

   Gtr1_RagA 131 eifeerkeeireeie 145
                 e++e +++e+  + +
  KKY19375.1 187 ELVEMEMRELLTQYK 201
                 **9999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3305.06
//
Query:       KKY19376.1  [L=422]
Description: hypothetical protein UCRPC4_g04536 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-49  167.5   0.0    2.7e-49  167.5   0.0    2.1  3  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso
  ------ inclusion threshold ------
       0.07   13.5   0.0       0.19   12.1   0.0    1.7  1  Sld7_N         Mitochondrial morphogenesis protein SLD7 N-ter


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.41   3.7e+03      51      93 ..      80     122 ..      30     135 .. 0.56
   2 !  167.5   0.0     3e-53   2.7e-49       1     155 [.     157     305 ..     157     308 .. 0.92
   3 ?   -4.0   0.2       1.7   1.6e+04      64      80 ..     326     342 ..     316     349 .. 0.48

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.41
  Pro_isomerase  51 vqgGdptgkts...ageqekkggesiraipdEitsklkhkrGalam 93 
                    +qg    + +s   +g+++  + e     p+ + +  +h+ G+ a+
     KKY19376.1  80 AQGQSLIKPQShktNGPTK--KIEAHASKPAAF-NASHHTTGMAAA 122
                    4444433322210011111..111111122222.233445565554 PP

  == domain 2  score: 167.5 bits;  conditional E-value: 3e-53
  Pro_isomerase   1 lvdietsskGrivieLfadkaPktvenFlklvkegfYdgttFhRvikgfmvqgGdptgktsageqekkggesi..raipdEitsklkh.krGalam 93 
                    +v+++t  +G+++ieL ++ aPk+v nF++l ++g+Y+g++FhR i++fm+qgGdptg+++ g+       si  +++ dE++  lkh  rG+++m
     KKY19376.1 157 YVRLHTT-QGDFTIELETEYAPKAVWNFIRLSQKGYYNGIVFHRNIRNFMLQGGDPTGSGKGGT-------SIwnKTFSDEFDGPLKHdARGVVSM 244
                    68999*5.**************************************************976443.......3333689*****77788799***** PP

  Pro_isomerase  94 artgkepnsagsqFfItlkeaphldgkytvFGkVveGmdvvekiekvetde.erpkknvkivs 155
                    a++g  +n+++sqFfI   +a+hld+k+t+FGkVveG++v++++e+v+td+ +rpk++++i +
     KKY19376.1 245 ANKG--KNTNSSQFFILYRPAKHLDRKHTIFGKVVEGLEVLDTLENVPTDSnDRPKDEIRILD 305
                    **98..6*****************************************************976 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 1.7
  Pro_isomerase  64 eqekkggesiraipdEi 80 
                    e+++k+++++++++dE 
     KKY19376.1 326 EEKQKEEKKRERADDES 342
                    22222332344555654 PP

>> Sld7_N  Mitochondrial morphogenesis protein SLD7 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.1e-05      0.19      78     114 ..     230     265 ..     220     272 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.1e-05
                 HHHH--STTEEEEEEE-SSSS--SE..EEEEEEETTE CS
      Sld7_N  78 fksKLkkknRgivielskkkekakeeeylvlyrkene 114
                 f   Lk+  Rg+v   +k k++ +++++++lyr +++
  KKY19376.1 230 FDGPLKHDARGVVSMANKGKNT-NSSQFFILYRPAKH 265
                 7788*******99888887766.5578*****98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1570  (0.0875676); expected 358.6 (0.02)
Passed bias filter:                      697  (0.0388756); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3112.41
//
Query:       KKY19377.1  [L=709]
Description: putative n domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-38  130.8   0.0    7.4e-38  130.1   0.0    1.4  1  YjeF_N    YjeF-related protein N-terminus
    8.9e-09   36.2   3.6    8.9e-09   36.2   3.6    2.1  2  FDF       FDF domain


Domain annotation for each model (and alignments):
>> YjeF_N  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.1   0.0   8.3e-42   7.4e-38       2     171 .]     477     656 ..     476     656 .. 0.94

  Alignments for each domain:
  == domain 1  score: 130.1 bits;  conditional E-value: 8.3e-42
      YjeF_N   2 eeLmenagravaevlrallgnspaekkvlvlvGsgnnGgdglaaArhLaqegakVtv..llleeeekldedaeralellkkaggkvveekpeedleekl 98 
                 ++L+ena+r+++e++ +  + s+++ ++lvl+G++++G++++aaArhL++++++V v  l  e+e+ l e  +r+l+++k+ gg+ v+++++++  +  
  KKY19377.1 477 DMLTENAARGISEAALKYGNISVPSGNILVLAGNHKSGARAIAAARHLRNRNMRVSVcaLGGEREDILLESLRRQLDIYKRGGGRCVTWDEFQSRISDW 575
                 79*******************************************************978888888***************************988777 PP

      YjeF_N  99 sapvdlviDAllGi.....glrgelreelaeliewlnsseapvlavDiPSGldadtGavsgta.....vkadvtvtfgapkrg 171
                 s  ++l++DAllG+      lr + ++++ e+i+w+n+s+  +++vD+PSGl+a+tG++++t      v+++ ++++gapk +
  KKY19377.1 576 S--PHLIVDALLGMhvafeELRLDQQASTFEMIRWMNRSSVHIFSVDVPSGLNASTGEITETDsgpllVNSTSIICLGAPKGC 656
                 6..***********99998899999999********************************54466667*************76 PP

>> FDF  FDF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.95   8.5e+03      54      72 ..     201     219 ..     188     235 .. 0.51
   2 !   36.2   3.6   9.9e-13   8.9e-09       4      91 ..     293     372 ..     290     390 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.95
                 XXXXXXXBXXBXXXXXXXE CS
         FDF  54 ekvegvdkkksffDkiSse 72 
                  +v+++ kk++   ++ s 
  KKY19377.1 201 SNVKAMTKKNKRATSKHST 219
                 3344433333333322222 PP

  == domain 2  score: 36.2 bits;  conditional E-value: 9.9e-13
                 SS---HCCCCCTSSCCHHCCHHHCC-XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXBXXBXXXXXXXEEEXTTXXEEEXXXHHHHHH CS
         FDF   4 eeDFDFesanakFnkkevfeellkkaklkeeklaknenaatatatneqpgekvegvdkkksffDkiSsegnergaqeheseedddwre 91 
                  +DFDFes++ kF+k +vf  ++ k+k   e++++++n     +++   ++ +++++ +++++D + ++++ +++  +++ e    re
  KKY19377.1 293 MGDFDFESNLSKFDKRQVFDDIRSKDKTADEDRLVSHN-----RKARPGTNGGKNLHYTENVLDPPETSTQWKSEAGETEDEV---RE 372
                 69********************************9655.....4455556677778888888888877777665555333332...33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 4533.08
//
Query:       KKY19378.1  [L=754]
Description: putative mitochondrial dna helicase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-58  196.5   0.2    3.3e-46  158.1   0.2    2.2  2  PIF1             PIF1-like helicase
    7.4e-24   84.5   0.0    1.2e-23   83.9   0.0    1.3  1  AAA_30           AAA domain
      4e-09   37.0   0.1    7.1e-09   36.2   0.1    1.4  1  AAA_19           AAA domain
    5.7e-06   26.0   1.0    1.5e-05   24.6   0.1    2.1  3  AAA_7            P-loop containing dynein motor region
    8.5e-05   22.4   0.3       0.23   11.1   0.2    3.0  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    8.6e-05   22.8   0.0    0.00022   21.5   0.0    1.6  1  AAA_22           AAA domain
    0.00018   19.6   0.7    0.00031   18.8   0.0    1.6  2  Herpes_Helicase  Helicase
    0.00043   20.7   0.0    0.00095   19.6   0.0    1.6  1  AAA_16           AAA ATPase domain
    0.00044   20.7   0.1     0.0014   19.0   0.1    1.9  1  AAA              ATPase family associated with various cellul
    0.00051   20.4   0.1     0.0039   17.6   0.1    2.5  1  RNA_helicase     RNA helicase
    0.00056   19.7   0.1     0.0014   18.4   0.1    1.7  1  UvrD_C_2         UvrD-like helicase C-terminal domain
     0.0011   19.0   0.0     0.0023   17.9   0.0    1.5  1  NACHT            NACHT domain
     0.0011   18.3   0.0     0.0023   17.3   0.0    1.6  1  DUF2075          Uncharacterized conserved protein (DUF2075)
     0.0013   18.8   0.0     0.0047   17.0   0.0    2.0  1  AAA_14           AAA domain
     0.0045   16.2   0.1     0.0093   15.2   0.1    1.5  1  NB-ARC           NB-ARC domain
     0.0068   16.2   0.0      0.037   13.9   0.0    2.2  1  SH3_13           ATP-dependent RecD-like DNA helicase SH3 dom
     0.0083   16.0   0.1      0.019   14.9   0.1    1.6  1  RsgA_GTPase      RsgA GTPase
     0.0085   16.0   1.3      0.014   15.3   0.1    1.9  2  ATPase_2         ATPase domain predominantly from Archaea
  ------ inclusion threshold ------
      0.014   14.4   0.0      0.025   13.6   0.0    1.3  1  T2SSE            Type II/IV secretion system protein
      0.017   14.9   0.2       0.17   11.6   0.0    2.4  2  AAA_11           AAA domain
      0.028   14.4   0.1      0.095   12.7   0.1    1.9  1  AAA_5            AAA domain (dynein-related subfamily)
      0.043   14.3   0.1       0.32   11.5   0.0    2.4  2  ABC_tran         ABC transporter
       0.05   12.5   0.1       0.46    9.3   0.0    2.2  2  AAA_10           AAA-like domain
      0.055   12.9   0.2       0.21   11.0   0.0    2.0  2  PhoH             PhoH-like protein
      0.055   13.4   0.1        0.3   11.0   0.0    2.2  2  NTPase_1         NTPase
       0.38   11.1   2.8       0.63   10.4   0.6    2.4  2  RFXA_RFXANK_bdg  Regulatory factor X-associated C-terminal bi


Domain annotation for each model (and alignments):
>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.1   0.2   4.8e-49   3.3e-46       2     220 ..     236     440 ..     235     449 .. 0.92
   2 !   36.3   0.0     5e-12   3.4e-09     266     363 ..     460     543 ..     444     544 .. 0.84

  Alignments for each domain:
  == domain 1  score: 158.1 bits;  conditional E-value: 4.8e-49
                 --HHHHHHHHHH......HCTS-EEEEESTTSSCHHHHHHHHHHCHC......TCCCEEEEESSHHHHHCC.TSEECHHHHT-TTSSS-HHHH..HHHT CS
        PIF1   2 LneeQkkvfdaiieavlnekgklfFvtGsgGtgKtflwkallkklrs......egkivlavAssGvAalllegGrtahsrfkiplekdeestc..kikr 92 
                 L++eQk+v++++      + gk++F+tGs+GtgK+ l ++++ kl+       +++ v+++As+G+Aa+++ +G t+hs+++i+l+k+ +  +  k+k+
  KKY19378.1 236 LSDEQKAVLRTV-----VNDGKSVFFTGSAGTGKSVLMRQIIDKLKDkyaskdNQSAVAVTASTGLAACNI-EGSTIHSFAGIGLGKEAAPELikKVKK 328
                 89*********9.....579*************************975665556789**************.9**************999888899*** PP

                 SCCCHHHHHC-SEEEEECGGGSBHHHHHHHHHHHHHHCT-...-SCCCC-EEEEE--TTS-----SSSSS---BGC...CSCHHHH.--.EEEE-S-ST CS
        PIF1  93 gsklaellkktsliiwDEapmverecfealdrtlrdilkekeidkpFGGktvvlgGDfrQilPviekgsraeivaasikeSklWke.vk.vlkLtknmR 189
                 + k   ++ +t+++i+DE++mv+ +++++l+ ++r+i ++    +pFGG++vv+ GDf+Q++Pv  ++++a ++++     + W + ++ ++ Lt+++R
  KKY19378.1 329 NMKAVTRWRQTKVLIMDEISMVDGDLYDKLEGIARAIKNN---GRPFGGIQVVVTGDFFQLPPVQ-ESNKAVRFCF---DAQTWPTtIQhTILLTHVFR 420
                 **************************************98...78******************97.8999999999...99***987767********* PP

                 TTT...........HHHHHHHHHHHCT---C CS
        PIF1 190 llsesldetekkelkeFskwllkigdGkine 220
                 +++             F+++l++++ Gk++ 
  KKY19378.1 421 QKDP-----------VFASMLNEMRLGKLTP 440
                 *995...........7999999999999865 PP

  == domain 2  score: 36.3 bits;  conditional E-value: 5e-12
                 ..EEEESSCCHHHHHHHHHHCCSSS--EEEE-EEE...........ESBSSCHHCHHHCCTTSS-SCEEE-TT-EEEE-S--CTT-SC-TCEEEEEEE CS
        PIF1 266 erailcptnedvdeiNnyvlsklpgeekeylssDsisksseeieeldalypteflnslkanglpnhvLkLkvGvpvmllrNldqsaGLcNGtrlivtq 363
                 e ++l pt+++v+++N +++ +l g++ +y++ D   + ++      +  ++ f n      +++ +L+ k+G++vml++N+d+  GL+NG+ ++++ 
  KKY19378.1 460 EATELFPTRKEVETANSTRMRNLSGQVFTYNAKDI--PGKD-----PIAAQKAFENM-----MAPPTLEFKKGAQVMLIKNFDE--GLVNGSLGKIQA 543
                 5689******************************9..3322.....44556677665.....566789**************95..8******99976 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   1.7e-26   1.2e-23       2     181 ..     236     446 ..     235     452 .. 0.78

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 1.7e-26
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaa.g.....grviglAptgkaAkvLa.......eelgi....eastiakllkrlkgr 83 
                 l++eQ+a++++++++g+  ++ tG AGtGK+ +++++ + ++++         v++ A+tg aA +++       +++g+    + + i+k+ k++k+ 
  KKY19378.1 236 LSDEQKAVLRTVVNDGK-SVFFTGSAGTGKSVLMRQIIDKLKDKyAskdnqSAVAVTASTGLAACNIEgstihsfAGIGLgkeaAPELIKKVKKNMKAV 333
                 799*************7.999****************77777764567777888899999999888884444433234433332444555555555587 PP

      AAA_30  84 arlepgtllivDEagmvdtkqlaallkaaeka........gakvilvGDerQlasVea.Ggvlrdlvea.....agigtaeLtevvRqkeseeraaala 168
                 +r+++ ++li DE++mvd +  ++l  +a++         g++v++ GD  Ql++V++  +++r +++a     + ++t+ Lt+v+Rqk++ ++++ ++
  KKY19378.1 334 TRWRQTKVLIMDEISMVDGDLYDKLEGIARAIknngrpfgGIQVVVTGDFFQLPPVQEsNKAVRFCFDAqtwptTIQHTILLTHVFRQKDPVFASMLNE 432
                 899999***********988877776666663356999988***************996789999998855554445999******************* PP

      AAA_30 169 lregdae.ealeal 181
                 +r g+ + + ++a+
  KKY19378.1 433 MRLGKLTpQSINAF 446
                 *****997554444 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1     1e-11   7.1e-09       9     144 ..     250     389 ..     239     391 .. 0.68

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1e-11
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelggvkp..eeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealelle....eaeeekklq 101
                   k ++ t+ +GtGK+ ++++i+  l++    k     +++ a tg Aa +++          +TiH++a +++ ++   a el++    + +  +  +
  KKY19378.1 250 DGKSVFFTGSAGTGKSVLMRQIIDKLKDKYASKDnqSAVAVTASTGLAACNIE---------GSTIHSFAGIGLGKEA--APELIKkvkkNMKAVTRWR 337
                 5678999********************98866541134445556666666666.........5669999776666655..5566665544334445555 PP

      AAA_19 102 eeellivDEfqdvd.elqyrLlkallgekkk.........lllvGDpdQliyv 144
                 ++++li DE+++vd +l  + l+ ++   k+         +++ GD  Ql++v
  KKY19378.1 338 QTKVLIMDEISMVDgDLYDK-LEGIARAIKNngrpfggiqVVVTGDFFQLPPV 389
                 566***********555544.45444222333557888889999999999986 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   2.2e-08   1.5e-05      23      65 ..     241     282 ..     236     297 .. 0.85
   2 ?   -3.1   0.0         7   4.8e+03      72     117 ..     333     355 ..     320     360 .. 0.51
   3 ?   -2.6   0.0       4.9   3.4e+03      61      83 ..     392     414 ..     385     430 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.2e-08
       AAA_7  23 syllelllknkkpvllvGptGtGKtviikdllkkldkekylsl 65 
                 + +l+++++ +k+v+++G++GtGK+v+++++++kl+ +ky s+
  KKY19378.1 241 KAVLRTVVNDGKSVFFTGSAGTGKSVLMRQIIDKLK-DKYASK 282
                 78999******************************9.888765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 7
       AAA_7  72 qtsanqlqdiiesklekrrkgvygPpggkklvvFvDDlnmpakeky 117
                  t  +q                       + v+ +D+++m   + y
  KKY19378.1 333 VTRWRQ-----------------------TKVLIMDEISMVDGDLY 355
                 222222.......................33444577777766666 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 4.9
       AAA_7  61 kylsltinfsaqtsanqlqdiie 83 
                 + + + + f aqt ++++q++i 
  KKY19378.1 392 SNKAVRFCFDAQTWPTTIQHTIL 414
                 55667788888888888888764 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.2   0.00034      0.23       4      75 ..     257     351 ..     254     365 .. 0.79
   2 !    7.5   0.0    0.0044         3     185     229 ..     646     683 ..     618     686 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
  Viral_helicase1   4 hGvpGcGKStlirkllrts..liltvnrptaelltegk.....................pklpnlsvrtvdsflmalvkstkgkililDEylll 74 
                       G +G GKS l r+++++      ++++++a+++t++                      +++  + ++ v++  +a ++  + k+li+DE+ ++
       KKY19378.1 257 TGSAGTGKSVLMRQIIDKLkdKYASKDNQSAVAVTASTglaacniegstihsfagiglgKEAAPELIKKVKKNMKAVTRWRQTKVLIMDEISMV 350
                      699*************999997777788889999999998888888888888888888766666666667765555555578888888888887 PP

  Viral_helicase1  75 h 75 
                      +
       KKY19378.1 351 D 351
                      6 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0044
  Viral_helicase1 185 vttvhevqGltfdkVtlvllketdlelisesrenllvAlTRhrks 229
                      ++  h +qG+t ++V + l +         ++ + +vAl+R++++
       KKY19378.1 646 ALSIHKAQGQTLERVKVNLGRVF-------EKGQAYVALSRATSQ 683
                      5789**************99554.......35678*******986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   3.2e-07   0.00022       5     128 ..     251     380 ..     248     383 .. 0.68

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3.2e-07
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst...sskdllrellralglelkaerlsseellealeqalrarav...iellii 97 
                  ++++ tG +GtGK++l+r++ ++l+ +++a + + + v vt++ +    + +    + +  +gl+++a      el++++ ++++a  +   +++li 
  KKY19378.1 251 GKSVFFTGSAGTGKSVLMRQIIDKLK-DKYASKDNQSAVAVTASTGLaacNIEGSTIHSFAGIGLGKEA----APELIKKVKKNMKAVTRwrqTKVLIM 344
                 678899******************95.556666677777777776663445555555555566655555....667777777777777777777***** PP

      AAA_22  98 DEaqhlrseealeeL....rsllnl..srkgvqliLv 128
                 DE+  +   +++ +L    r + n+     g+q+++ 
  KKY19378.1 345 DEISMV-DGDLYDKLegiaRAIKNNgrPFGGIQVVVT 380
                 **9999.555555443335556665666666666665 PP

>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.4   9.5e+02      63      83 ..     255     275 ..     252     303 .. 0.68
   2 !   18.8   0.0   4.6e-07   0.00031     733     789 ..     646     701 ..     640     711 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.4
  Herpes_Helicase  63 litGtAGaGkstsiqalaenl 83 
                        tG+AG+Gks  +  + ++l
       KKY19378.1 255 FFTGSAGTGKSVLMRQIIDKL 275
                      579*******98776665554 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 4.6e-07
  Herpes_Helicase 733 amtiaksqGlslekvAicFgnhknlklssvYvalsRatdsefl.vmdvnPLrereekd 789
                      a+ i k+qG  le+v ++ g      + + YvalsRat+   l v++ n  + + +++
       KKY19378.1 646 ALSIHKAQGQTLERVKVNLGRV--FEKGQAYVALSRATSQAGLqVLNFNANKVMVHQK 701
                      899****************977..99************98877367888777766554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.4e-06   0.00095      14      52 ..     242     288 ..     236     390 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.4e-06
      AAA_16  14 salervrsgrpelvllsGesGvGKsslvrellralekd.........g 52 
                 ++l++v  ++  +v+++G +G+GKs l+r++ + l+++          
  KKY19378.1 242 AVLRTVVNDG-KSVFFTGSAGTGKSVLMRQIIDKLKDKyaskdnqsaV 288
                 4566665554.8**********************99994444444331 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   2.1e-06    0.0014       1      68 [.     254     348 ..     254     360 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.1e-06
                 EEEESSTTSSHHHHHHHHHHHHTHE...................EEEEETTTCSSS..STTHHHHHHHHHHHHHHHTS.......TSEEEEEETGG CS
         AAA   1 vllyGppGtGKTllakavakelgve...................fleisgsellsk..yvgesekkirelfkeakeka.......kpsilfiDEid 68 
                 v ++G  GtGK+ l+++++ +l+ +                    ++i+gs++  +   +g +++   el+k++k++        ++++l++DEi 
  KKY19378.1 254 VFFTGSAGTGKSVLMRQIIDKLKDKyaskdnqsavavtastglaACNIEGSTIH-SfaGIGLGKEAAPELIKKVKKNMkavtrwrQTKVLIMDEIS 348
                 5799*****************964422333344444444444446777777777.14667777777777777766655667799667*******95 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   5.6e-06    0.0039       1      62 [.     254     351 ..     254     385 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 5.6e-06
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl....................................klkkkdsvysrnpeddfwdgYtgqevvvidDfgqv 61 
                   ++++G++g+GKS+l+++++++l +k+                                    k+   + +   +++ + +  +++ +v+++d+++ v
    KKY19378.1 254 VFFTGSAGTGKSVLMRQIIDKLKDKYaskdnqsavavtastglaacniegstihsfagiglgKEAAPELIKKVKKNMKAVTRWRQTKVLIMDEISMV 350
                   6899********************9976666666666666666666666666666666666433333333336666666666666666666666665 PP

  RNA_helicase  62 k 62 
                    
    KKY19378.1 351 D 351
                   5 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   2.1e-06    0.0014       2      49 ..     644     684 ..     643     686 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.1e-06
    UvrD_C_2   2 ayaltihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTRArekl 49 
                 a+al+ihkaQG+  + V v       ++     +  +Y+a++RA+ + 
  KKY19378.1 644 AWALSIHKAQGQTLERVKV--NLGRVFE-----KGQAYVALSRATSQA 684
                 8******************..5555555.....5579*******9875 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.3e-06    0.0023       3      36 ..     254     287 ..     252     357 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.3e-06
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SE CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafkl 36 
                 v+ +G aG GK++L++++++++++++  +++ + 
  KKY19378.1 254 VFFTGSAGTGKSVLMRQIIDKLKDKYASKDNQSA 287
                 7899********************9998887444 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.3e-06    0.0023       4      96 ..     254     346 ..     251     502 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.3e-06
     DUF2075   4 vlVtGvaGtGKtvvllnllael.....eddeeertavylsvNhplvlvlrealakke..ekkkkkeafeklssfinnlsefkkaeekkeepkedvvivD 95 
                 v+ tG aGtGK+v++ +++ +l     ++d++   av +s   +       ++++++  +   ++   e   ++i++++  k+ ++  + ++ +v+i+D
  KKY19378.1 254 VFFTGSAGTGKSVLMRQIIDKLkdkyaSKDNQSAVAVTASTGLAAC-----NIEGSTihSFAGIGLGKEAAPELIKKVK--KNMKAVTRWRQTKVLIMD 345
                 788*******************654333333333333333333333.....3333333333455555666667777777..666666688888888888 PP

     DUF2075  96 E 96 
                 E
  KKY19378.1 346 E 346
                 8 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   6.8e-06    0.0047       3      99 ..     252     381 ..     250     382 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6.8e-06
      AAA_14   3 kilvitGaRrvGKTtllkqlikell.....vkkesilyinldderd...................kkladpekllelileklke....ekktylflDEi 73 
                 k ++ tG   +GK++l++q+i++l       +++s + ++  +                       k+a p +l++ +++++k+    +++++l++DEi
  KKY19378.1 252 KSVFFTGSAGTGKSVLMRQIIDKLKdkyasKDNQSAVAVTAST--GlaacniegstihsfagiglGKEAAP-ELIKKVKKNMKAvtrwRQTKVLIMDEI 347
                 678899999************9999888554444444444444..23366666666666555554222223.3555555543336779899******** PP

      AAA_14  74 qev.....pewekalkslvdeg...knldvivtG 99 
                 ++v     +++e + + + ++g     ++v+vtG
  KKY19378.1 348 SMVdgdlyDKLEGIARAIKNNGrpfGGIQVVVTG 381
                 ***7666644444444444444211345777776 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.4e-05    0.0093      22      74 ..     253     307 ..     238     369 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.4e-05
                 EEEEEESTTSSHHHHHHHHCCSHCCCCCCBT..EEEEEEEESXXHHHHHHHXXHH CS
      NB-ARC  22 vvalvGmgGvGKttlakqilnksdevegrFd..svawvvvsktdkseeiletilk 74 
                  v++ G +G GK++l++qi+ k++      d  s + v+ s     ++i  + ++
  KKY19378.1 253 SVFFTGSAGTGKSVLMRQIIDKLKDKYASKDnqSAVAVTASTGLAACNIEGSTIH 307
                 599*****************99877665444225555555555555655555555 PP

>> SH3_13  ATP-dependent RecD-like DNA helicase SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   5.3e-05     0.037      25      55 ..     516     545 ..     502     561 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.3e-05
      SH3_13  25 vfrvgDkVmqlkNnydkgvfNGDiGiikeid 55 
                  f+ g +Vm +kN  + g+ NG +G+i+++ 
  KKY19378.1 516 EFKKGAQVMLIKNFDE-GLVNGSLGKIQAFM 545
                 49**********9766.**********9983 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   2.7e-05     0.019      77     126 ..     231     278 ..     209     306 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.7e-05
                  SEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  77 yevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelk 126
                  ++v+++s +   + + l+++++d k +++ G+ G GKS L+ +++ +l+ k
   KKY19378.1 231 MPVIFLSDE---QKAVLRTVVNDgKSVFFTGSAGTGKSVLMRQIIDKLKDK 278
                  577777766...5566777777769999****************9986544 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   2.1e-05     0.014      22     130 ..     253     350 ..     239     357 .. 0.68
   2 ?   -2.7   0.1       6.4   4.4e+03     208     221 ..     552     565 ..     537     584 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.1e-05
    ATPase_2  22 iyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkklekalgiavpkaeleeilkeksklvfkaielllekikkkgkki 120
                  +f +G+ g GK+ L+++ii +l+dk   +   +a+   +++ l      + e + +   +gi ++k ++         ++ k++++ ++++++ ++  
  KKY19378.1 253 SVFFTGSAGTGKSVLMRQIIDKLKDKYASKDNQSAVAVTASTGLAAC---NIEGSTIHSFAGIGLGKEAA--------PELIKKVKKNMKAVTRWRQTK 340
                 57889******************885544433333333333333333...45555577777777777777........555666666667777777777 PP

    ATPase_2 121 iiiiDelqkl 130
                 ++i+De+ ++
  KKY19378.1 341 VLIMDEISMV 350
                 8888887765 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.4
    ATPase_2 208 leelskedfeeiyr 221
                   + ++e+feei+ 
  KKY19378.1 552 YWKDNEEEFEEIWG 565
                 23337788888884 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.6e-05     0.025     115     156 ..     229     278 ..     184     286 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.6e-05
       T2SSE 115 k........ekiaevlrkavrerglilvsGgTgsGKttllyallkeinks 156
                 +        +++++vlr+ v+  +++ ++G  g+GK++l+  ++ +++++
  KKY19378.1 229 RkmpviflsDEQKAVLRTVVNDGKSVFFTGSAGTGKSVLMRQIIDKLKDK 278
                 1555555558999***************************9999988765 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00025      0.17       2      76 ..     236     307 ..     235     350 .. 0.86
   2 ?    0.3   0.0      0.71   4.9e+02     244     258 ..     376     390 ..     371     393 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00025
      AAA_11   2 lndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllr 76 
                 l d+q+  ++++++  + + + G  GtgK+    +++ +l   + + ++k+++  + v+a++  A +++    + 
  KKY19378.1 236 LSDEQKAVLRTVVNDGKSVFFTGSAGTGKSVLMRQIIDKL---KDKYASKDNQSAVAVTASTGLAACNIEGSTIH 307
                 578999999********9**********************...346789999999*****999999999766655 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.71
      AAA_11 244 kvvLvGDpkQLpatv 258
                 +vv  GD  QLp++ 
  KKY19378.1 376 QVVVTGDFFQLPPVQ 390
                 7999*********85 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   0.00014     0.095       2      86 ..     254     359 ..     253     366 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00014
                 EEEE--SSSSHHHHHHHGGGGB........S--EEEEE--TT--HHHHH--B--......................--------G-SEEEEESGGG--H CS
       AAA_5   2 vlLvGppGtgKselaerlaaal........nreveyvqltrdtteedlkgrreik.............ngttslvdsplvraaregeilvlDEveraes 79 
                 v+  G  GtgKs l++++   l        n++ + v  + ++ + ++ g++  +               +++ ++ ++v+  r+ ++l++DE+ +++ 
  KKY19378.1 254 VFFTGSAGTGKSVLMRQIIDKLkdkyaskdNQSAVAVTASTGLAACNIEGSTIHSfagiglgkeaapeLIKKVKKNMKAVTRWRQTKVLIMDEISMVDG 352
                 899*******************999999999999999999999999999999987888866554443222333334444444559**********9999 PP

                 HHHHHHH CS
       AAA_5  80 evlnsLl 86 
                 +  ++L 
  KKY19378.1 353 DLYDKLE 359
                 9888875 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00046      0.32       8      37 ..     248     277 ..     243     297 .. 0.89
   2 ?   -1.8   0.0         6   4.2e+03     120     134 ..     332     346 ..     326     348 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00046
                 EETTSEEEEEESTTSSHHHHHHHHTTSS-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllkp 37 
                 ++ g+ v ++G+ G+GKS L++ ++ +lk+
  KKY19378.1 248 VNDGKSVFFTGSAGTGKSVLMRQIIDKLKD 277
                 789*******************99988765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 6
                 HHHHHHTSSEEEEES CS
                 xxxxxxxxxxxxxxx RF
    ABC_tran 120 arallkkpkllllDE 134
                 a + +++ k+l++DE
  KKY19378.1 332 AVTRWRQTKVLIMDE 346
                 5677999*******9 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00067      0.46      12      42 ..     241     272 ..     233     277 .. 0.83
   2 ?    0.3   0.0      0.38   2.6e+02     238     305 ..     336     404 ..     321     436 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00067
      AAA_10  12 qevkgsktnasas.liiGdlGnGKSvlakllv 42 
                 ++v +++ n  +s +++G+ G GKSvl++ ++
  KKY19378.1 241 KAVLRTVVNDGKSvFFTGSAGTGKSVLMRQII 272
                 677788888888879*************9876 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.38
      AAA_10 238 kkefkvvifDEawifts..saeGkkllkelvRiGRsynaavylvtqsadDvlkeelknniglklaFretd 305
                  ++ kv i+DE  +      ++ + + + ++  GR +  + + vt ++  + + + +n  +++++F++++
  KKY19378.1 336 WRQTKVLIMDEISMVDGdlYDKLEGIARAIKNNGRPFGGIQVVVTGDFFQLPPVQESN-KAVRFCFDAQT 404
                 566788888888887652245556689999999*************999987766554.589****9876 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0003      0.21       6      36 ..     237     268 ..     233     282 .. 0.81
   2 ?   -3.3   0.0       7.3   5.1e+03      62      83 ..     344     365 ..     327     368 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0003
                 SHHHHHHHHHHH.H-SEEEEE--TTSSTTHHH CS
        PhoH   6 tkeQkeylealk.kndivfaiGpaGtGKtyla 36 
                 + eQk++l+++  + + vf +G+aGtGK+ l 
  KKY19378.1 237 SDEQKAVLRTVVnDGKSVFFTGSAGTGKSVLM 268
                 67999999988758889************985 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.3
                 T----SS---------TTTHHH CS
        PhoH  62 geelGflpgdleekvdpylrpl 83 
                  +e+ +++gdl +k++ + r++
  KKY19378.1 344 MDEISMVDGDLYDKLEGIARAI 365
                 4567777777777777777666 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00043       0.3       2      26 ..     254     278 ..     253     283 .. 0.92
   2 ?   -1.5   0.0         3   2.1e+03      90     104 ..     334     347 ..     322     371 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00043
                 EEEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkss 26 
                 vf TG+ G+GK+ l+++++++lk++
  KKY19378.1 254 VFFTGSAGTGKSVLMRQIIDKLKDK 278
                 899*******************986 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3
                 HHHHHHH-EEEE--- CS
    NTPase_1  90 rkalseadviviDEi 104
                 ++  +++ v+++DEi
  KKY19378.1 334 TR-WRQTKVLIMDEI 347
                 33.37889******9 PP

>> RFXA_RFXANK_bdg  Regulatory factor X-associated C-terminal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.6   0.00092      0.63      16      66 ..     162     224 ..     154     244 .. 0.84
   2 ?   -0.9   0.1       2.9     2e+03      32      89 ..     276     328 ..     268     340 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00092
  RFXA_RFXANK_bdg  16 kqRk.pwmckkhrnkmykdKykkk...........ksDqalnskkelvkarlekkkeeepvsv 66 
                      k+R  pw  k   +   k+Ky+k+           k+Dq + +kk+  k+ ++k+++  +v +
       KKY19378.1 162 KRRTvPWLDKDAYTPLAKEKYHKSpypwnktasaiKEDQRALRKKNRGKKPVQKDHTGVKVGA 224
                      56656*******************9*9999999999999888888888888888877766654 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.9
  RFXA_RFXANK_bdg  32 kdKykkkksDqalnskkelvkarlekkkeeepvsvtkqrtgsvGdrparPtlleqVLn 89 
                      kdKy  k +  a++ +   +    + + e +++    +  g+  +++a+P+l+++V  
       KKY19378.1 276 KDKYASKDNQSAVAVTA--STGLAACNIEGSTIH---SFAGIGLGKEAAPELIKKVKK 328
                      45555444444444444..333334444444444...666666678889999998854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.88u 0.36s 00:00:01.24 Elapsed: 00:00:00.54
# Mc/sec: 4233.15
//
Query:       KKY19379.1  [L=481]
Description: putative nuclear and cytoplasmic polyadenylated rna-binding protein pub1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-57  191.0   0.0    3.3e-21   74.9   0.0    3.3  3  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    1.2e-05   24.9   0.0     0.0021   17.7   0.0    3.0  3  RRM_5         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    1.2e-05   25.0   0.0       0.72    9.8   0.0    3.5  3  RRM_occluded  Occluded RNA-recognition motif
    9.5e-05   22.5   0.0       0.46   10.7   0.0    2.3  2  RRM_8         RRM-like domain
    0.00057   19.9   0.1        1.1    9.5   0.0    3.4  3  RRM_7         RNA recognition motif
  ------ inclusion threshold ------
      0.026   14.5   0.0         14    5.7   0.0    3.3  3  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   7.1e-21   2.1e-17       1      70 []      88     159 ..      88     159 .. 0.96
   2 !   74.9   0.0   1.1e-24   3.3e-21       1      70 []     180     250 ..     180     250 .. 0.99
   3 !   50.0   0.0   6.5e-17   1.9e-13       2      70 .]     307     370 ..     306     370 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 7.1e-21
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE..TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd..etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 l+Vg+L p vte+ Lk++F+  G + s+k+++d   + k  +++fVe++++ +Ae+A ++lng+ ++++e++
  KKY19379.1  88 LYVGGLDPRVTEDVLKQIFETSGHVISVKIIPDknFQSKGLNYGFVEYDDPANAERASQNLNGRRVHQSEIR 159
                 8********************************888888889*************************99986 PP

  == domain 2  score: 74.9 bits;  conditional E-value: 1.1e-24
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 +fVg+L+++v++e L + Fs fG++++++++ d +tg+s+g++fV F  + dAekAl++++g+ lg+r ++
  KKY19379.1 180 IFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDmKTGRSRGYGFVAFRERPDAEKALANMDGEWLGSRAIR 250
                 8*******************************************************************986 PP

  == domain 3  score: 50.0 bits;  conditional E-value: 6.5e-17
                 EEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   2 fVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 +VgnL+p++t+++L  lF++fG + + +   d     +gf f++++++e+A+ A+ +l g++++gr+lk
  KKY19379.1 307 YVGNLTPYTTQNDLVPLFQNFGYVLETRFQAD-----RGFSFIKMDTHENAAMAICQLSGYNVNGRPLK 370
                 9******************************9.....*****************************986 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     7e-07    0.0021      18     103 ..      77     167 ..      59     181 .. 0.83
   2 ?   -0.3   0.0      0.26   7.7e+02      37      91 ..     187     245 ..     179     271 .. 0.68
   3 ?    3.0   0.0     0.023        69      40     100 ..     316     375 ..     287     381 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 7e-07
       RRM_5  18 pgaagvaegsVllVyglepdkvnldklFnlfclYgnvervkflktkk......etalvqmgdasaveravqHLnnaklfgkrlevalSKqqa 103
                   aa+ ++   l V gl+p +v+ d l  +f   g v  vk++  k+      ++ +v+  d  ++era q Ln+ +++ ++++v    q +
  KKY19379.1  77 RRAAPEPNKRALYVGGLDP-RVTEDVLKQIFETSGHVISVKIIPDKNfqskglNYGFVEYDDPANAERASQNLNGRRVHQSEIRVNWAYQSN 167
                 4678888999999****98.799*******************977754444446789****************************9988876 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.26
       RRM_5  37 dkvnldklFnlfclYgnvervkflktkk.....etalvqmgdasaveravqHLnnaklfg 91 
                 ++vn + l   f+ +g v+  +++   k     ++ +v   +  ++e+a+  + ++ l g
  KKY19379.1 187 NEVNDEVLLQAFSAFGSVSEARVMWDMKtgrsrGYGFVAFRERPDAEKALANMDGEWL-G 245
                 4688888999999999998888875432111226777777777788888777777777.4 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.023
       RRM_5  40 nldklFnlfclYgnvervkflktkketalvqmgdasaveravqHLnnaklfgkrlevalSK 100
                 + + l  lf  +g v   +f +  ++ ++++m    ++  a+  L++ ++ g++l+    K
  KKY19379.1 316 TQNDLVPLFQNFGYVLETRF-QADRGFSFIKMDTHENAAMAICQLSGYNVNGRPLKCSWGK 375
                 45567778888888888887.567899**************************99987776 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0006       1.8       7      70 ..      91     160 ..      85     163 .. 0.82
   2 ?    2.5   0.0     0.046   1.4e+02      42      70 ..     223     251 ..     180     256 .. 0.84
   3 !    9.8   0.0   0.00024      0.72      33      71 ..     334     372 ..     307     376 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0006
  RRM_occluded   7 lplsDtvnkariralveekegeikkivLvpdhe....G...AivefkdekiagkasLaLdgsefegkklrc 70 
                    +l  +v+++ +++++e+  g++  + + pd++    G    +ve++d + a +as  L+g + +  ++r+
    KKY19379.1  91 GGLDPRVTEDVLKQIFETS-GHVISVKIIPDKNfqskGlnyGFVEYDDPANAERASQNLNGRRVHQSEIRV 160
                   5677789999999999999.***99999999863333344479*********************9999997 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.046
  RRM_occluded  42 ivefkdekiagkasLaLdgsefegkklrc 70 
                   +v f+++ +a ka+  +dg  +  + +rc
    KKY19379.1 223 FVAFRERPDAEKALANMDGEWLGSRAIRC 251
                   6999************************9 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00024
  RRM_occluded  33 vLvpdheGAivefkdekiagkasLaLdgsefegkklrcG 71 
                     ++d + ++++++ ++ a+ a+ +L g++ +g+ l+c+
    KKY19379.1 334 RFQADRGFSFIKMDTHENAAMAICQLSGYNVNGRPLKCS 372
                   5677888899****************************7 PP

>> RRM_8  RRM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00041       1.2      24      75 ..      97     153 ..      88     161 .. 0.77
   2 !   10.7   0.0   0.00015      0.46       4      71 ..     169     240 ..     166     246 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00041
       RRM_8  24 vtsevLhqvYdaYGav.avqvLavstwqveal....vsflsshDaerarsathgrni 75 
                 vt++vL+q++++ G v +v+++  +++q + l    v +    +aera  + +gr +
  KKY19379.1  97 VTEDVLKQIFETSGHViSVKIIPDKNFQSKGLnygfVEYDDPANAERASQNLNGRRV 153
                 9*************76389**********9983222444444558888888888776 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00015
       RRM_8   4 alggdsgavLrvtvshilYpvtsevLhqvYdaYGava.vqvL.avst..wqvealvsflsshDaerarsath 71 
                 +   d+++  ++ v  +   v +evL q + a+G+v+  +v+  ++t   +    v f+ + Dae+a ++ +
  KKY19379.1 169 NNKEDTSNHYHIFVGDLSNEVNDEVLLQAFSAFGSVSeARVMwDMKTgrSRGYGFVAFRERPDAEKALANMD 240
                 56678899999***********************9851445423444114445799*********9987665 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0028       8.5       3      29 ..      87     113 ..      85     173 .. 0.91
   2 !    9.5   0.0   0.00036       1.1       3      29 ..     179     205 ..     177     239 .. 0.76
   3 ?   -1.4   0.0      0.87   2.6e+03       5      28 ..     307     330 ..     304     344 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0028
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkvl 29 
                  ++vGGl + +te+ lk+ f++ g+v+
  KKY19379.1  87 ALYVGGLDPRVTEDVLKQIFETSGHVI 113
                 689******************999874 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00036
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkvl 29 
                  +FvG l  ++++e l ++f++fg+v+
  KKY19379.1 179 HIFVGDLSNEVNDEVLLQAFSAFGSVS 205
                 59**********************974 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.87
       RRM_7   5 FvGGlPiDiteeelkatfkefgkv 28 
                 +vG l +  t+++l+  f++fg v
  KKY19379.1 307 YVGNLTPYTTQNDLVPLFQNFGYV 330
                 78999999999999999***9976 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0048        14       4      52 ..      88     144 ..      85     144 .. 0.76
   2 ?    3.3   0.0     0.028        82      33      53 .]     210     236 ..     194     236 .. 0.73
   3 ?    1.1   0.0      0.14   4.1e+02      20      52 ..     323     355 ..     315     356 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0048
  Nup35_RRM_2   4 vaVsGydtelielVle.hFasfGeIvk.hyvp......kevsvmyvkfesekdaekA 52 
                    V G d+   e+Vl   F+  G++   + +p      k+ ++ +v++ ++ +ae+A
   KKY19379.1  88 LYVGGLDPRVTEDVLKqIFETSGHVISvKIIPdknfqsKGLNYGFVEYDDPANAERA 144
                  56777778888888887788888877753344566669999**************99 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.028
  Nup35_RRM_2  33 p......kevsvmyvkfesekdaekAL 53 
                         +++ + +v f+ + daekAL
   KKY19379.1 210 MwdmktgRSRGYGFVAFRERPDAEKAL 236
                  4444444778899*************8 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.14
  Nup35_RRM_2  20 hFasfGeIvkhyvpkevsvmyvkfesekdaekA 52 
                   F++fG + +  +   + + ++k  +  +a++A
   KKY19379.1 323 LFQNFGYVLETRFQADRGFSFIKMDTHENAAMA 355
                  599********9998899999998888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3189.70
//
Query:       KKY19380.1  [L=372]
Description: hypothetical protein UCRPC4_g04540 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.094   11.5   4.9       0.14   11.0   4.9    1.1  1  Fmp27_WPPW       RNA pol II promoter Fmp27 protein domain
        2.6    6.8   6.6        3.4    6.4   6.6    1.1  1  DUF4551          Protein of unknown function (DUF4551)
          3    8.4  14.3         12    6.5  14.4    1.9  1  Striatin         Striatin family
        5.5    5.7   3.9        7.4    5.2   3.9    1.1  1  O-antigen_lig    O-antigen ligase like membrane protein


Domain annotation for each model (and alignments):
>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.9   3.1e-05      0.14     155     262 ..      53     156 ..      38     177 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.1e-05
  Fmp27_WPPW 155 ektHdCilgkendpervqkelleeRleeleeqiekleekleelelksekedeelkeeieelekeikelkeklefletlledlkeseesseeeeskskel 253
                 e   +C ++  n    +  +l + R++++  + e ++++ ++le+++ +++++ +   ++ ++ +++  + l++l+++l+d+++++e++++e+s    +
  KKY19380.1  53 EALDKCEIQILNAKWMLEYDLSQARAKRVAVSAEAVNTSKRKLENDEASKHADETPSKKQKNEAAEVEVDHLSTLDAMLKDMDNENEPQTQETS----K 147
                 556677777777777888999***********************9999986666666677777788888999************9996553322....2 PP

  Fmp27_WPPW 254 saastsesf 262
                  ++++ +s+
  KKY19380.1 148 LESNQISSS 156
                 222222222 PP

>> DUF4551  Protein of unknown function (DUF4551)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   6.6   0.00076       3.4     102     215 ..      87     203 ..      42     217 .. 0.42

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00076
     DUF4551 102 talkselllskdkkselfkvspskasekksrressgaa...kkssslnessl.dakekeektvskksqlslsl.selrklseeekeelesekalkslrs 195
                 ++  s+++l+ d+ s+ ++  psk++++++++         +    l++ +  ++ +++e+   +++q+s s+  +++++ +e+   +    +l+    
  KKY19380.1  87 AVNTSKRKLENDEASKHADETPSKKQKNEAAEVEV--DhlsTLDAMLKDMDNeNEPQTQETSKLESNQISSSEpPTSTATVTEKPAASAAAPPLNGHGE 183
                 22233333333333333333333222222222111..01111112222222211111222222223333322232222222233333333344555556 PP

     DUF4551 196 asrplPesllsrapkppssp 215
                 +s plPe + +++ ++p+++
  KKY19380.1 184 TSQPLPEGPEASKEEEPPNT 203
                 66666666533333323222 PP

>> Striatin  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  14.4    0.0026        12      56     133 ..      67     147 ..      48     214 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0026
    Striatin  56 kmLEyalkqerakylklkegtsaakenkkkekeeeeaeeeekseeeskskekksakeslkks....eaeeesesekrdeksr 133
                  mLEy l q rak +++  ++ +++++k ++ +e +++++e+ ++++k++++++  ++l++     ++ +++++++ +e+s+
  KKY19380.1  67 WMLEYDLSQARAKRVAVSAEAVNTSKRKLEN-DEASKHADETPSKKQKNEAAEVEVDHLSTLdamlKDMDNENEPQTQETSK 147
                 5************666543333332222222.22222222322333333333333344444466662223333333333333 PP

>> O-antigen_lig  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   3.9    0.0017       7.4     270     328 ..      90     149 ..      80     156 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0017
  O-antigen_lig 270 yrrkelkekeieiksekkeeeeikneikenykseglk..eavleqyeyandkqfsqellke 328
                     ++++l+++e+ ++ +++ +++ kne + + ++++l   +a+l++ + +n++q++++ + e
     KKY19380.1  90 TSKRKLENDEASKHADETPSKKQKNE-AAEVEVDHLStlDAMLKDMDNENEPQTQETSKLE 149
                    45678899999999999999999999.788888888899***************9986554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1525  (0.0850577); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.39s 00:00:01.12 Elapsed: 00:00:00.57
# Mc/sec: 1971.89
//
Query:       KKY19381.1  [L=813]
Description: putative mfs transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-19   69.0  11.4    7.4e-19   68.1  11.4    1.5  1  FUSC_2    Fusaric acid resistance protein-like
    2.1e-09   37.0  13.2    1.8e-08   33.9   0.3    3.7  4  ArAE_2_N  Putative ER transporter, 6TM, N-terminal
    9.2e-08   32.2   0.3    3.5e-06   27.0   0.0    3.1  3  ArAE_2    Aromatic acid exporter family member 2
  ------ inclusion threshold ------
      0.064   13.2   0.0       0.14   12.2   0.0    1.4  1  S1-like   S1-like
      0.093   13.3   0.3        0.5   10.9   0.2    2.1  2  TipAS     TipAS antibiotic-recognition domain
       0.62    8.8  16.1      0.038   12.8   8.5    2.5  2  ALMT      Aluminium activated malate transporter


Domain annotation for each model (and alignments):
>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1  11.4   2.5e-22   7.4e-19       8     127 .]     383     520 ..     366     520 .. 0.83

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 2.5e-22
      FUSC_2   8 llglwrgeWalitaaivlsptlgasltravqRilGtvlGavlallllyllpgnlala...llvfllvfliafflkrny..alafifltllalllyslaa 101
                 ++  +rg+Wa+i++ai++s ++g+    +++Ri+Gt+++++++l+++y++++  +++   + vf++ f++ +++++++  a+++ ++t+++++ y+l++
  KKY19381.1 383 FFVKQRGIWAVIMIAISMSSHAGQGISGFIMRIVGTIIAMCTSLIIWYMGDKRTGAIlplMYVFTVPFFYVIIKAPQFapAAMISMVTPILIIGYELQV 481
                 34449***********************************************955554556788888888888888877799999************99 PP

      FUSC_2 102 ......gsgnpie............ialhRlldvliGiliallv 127
                       +     +            +a++Rl+ v++G  +a+++
  KKY19381.1 482 rklglaT-----SesngqpyypiyeLAPYRLATVCAGLGVAFIW 520
                 7665540.....144556667*********************97 PP

>> ArAE_2_N  Putative ER transporter, 6TM, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.3     6e-12   1.8e-08     257     386 ..      28     127 ..      13     164 .. 0.73
   2 ?   -3.6   2.1       1.4   4.2e+03     151     184 ..     393     426 ..     388     441 .. 0.53
   3 ?   -4.0   0.2       1.8   5.4e+03     138     175 ..     434     470 ..     422     478 .. 0.74
   4 !    9.8   0.0   0.00012      0.36     205     344 ..     513     662 ..     491     673 .. 0.68

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 6e-12
    ArAE_2_N 257 ewlnfkklekditkirslypkleaelaflplEfsigrfsaedvkelrstlrrlissiagLvyfydlleelravilkserssklaanghakldseieekk 355
                    + +k++ ++t + +l+ k++ae  f+ +E ++g ++++d ++l + +r ++++i+gL+ f d++++ ++   k+++++ ++ +++a + ++ + ++
  KKY19381.1  28 VSQEAQKMKGLVTEMAGLFGKINAEIVFAEREAAYGHLQPHDFGQLTKLCRSILLPISGLATFIDIIQSVKQ--RKIAHHKMIESEETAAAIKKLTHEE 124
                 3334499**************************************************************966..4445554444444444444333333 PP

    ArAE_2_N 356 .revgayetkksielleardaqrsltlsdlde 386
                  +                             +
  KKY19381.1 125 wD-----------------------------D 127
                 32.............................3 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.4
    ArAE_2_N 151 flffvgrlrakspkfalgaifgiIaadvfltyap 184
                  +++  ++ ++  + + g+i+ i+ + ++++ + 
  KKY19381.1 393 VIMIAISMSSHAGQGISGFIMRIVGTIIAMCTSL 426
                 3444444444444444444444444444444443 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 1.8
    ArAE_2_N 138 arvsvvyavllcvflffvgrlrakspkfalgaifgiIa 175
                  r+ +++ ++ ++++ f+  +  k p+fa++a ++++ 
  KKY19381.1 434 KRTGAILPLMYVFTVPFFY-VIIKAPQFAPAAMISMVT 470
                 5777887777766666655.888899999999888765 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.00012
    ArAE_2_N 205 glalkvvvsllifPttssfqvlktmlkllkllkkalkfnsnflatlepsnese..............wlnfkklekditkirslypkleaelaflplEf 289
                 gl++ +++    +P+t++  + k++ +   l  +   +  +  a+++ s+++               +   k+ +k   ki  l++ +ea + ++ +E 
  KKY19381.1 513 GLGVAFIWTYFPYPITTRLTLRKQIGSCFYLFANYYSCVHT-TAQMRLSEDAAkedettpgtpafrlA---KARSKVFAKILLLLSSIEANSNLVTYEP 607
                 55666666666677777777777777766555554443222.22222222222235577777754444...66677788889999************** PP

    ArAE_2_N 290 sig.rfsaedvkelrstlrrlissiagLvyfydlleelravilkserssklaangh 344
                 ++g +f  e + +l+++lr+l++  +  +y   ++++  ++ ++s++++  ++ ++
  KKY19381.1 608 TFGgKFPKETYDDLITSLRHLLNYFTLISYATNTFVSSSSSLSSSANDNTAED-DE 662
                 **549******************999999999999999775555544433333.22 PP

>> ArAE_2  Aromatic acid exporter family member 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.18   5.2e+02      36     111 ..      21      95 ..      11     156 .. 0.81
   2 !   27.0   0.0   1.2e-09   3.5e-06       1     110 [.     524     642 ..     524     651 .. 0.88
   3 ?    0.2   0.0      0.18   5.4e+02     130     156 ..     687     713 ..     675     728 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.18
      ArAE_2  36 lenphihikaerdqirkkilevleklaglkgllvllkfElslkGrwpskkyarlqalvselvqllarLlvvlkrle 111
                 le    ++++e+ ++ + + e++    ++++ +v ++ E    G      + +l++l+++++   + L++ ++ ++
  KKY19381.1  21 LEPDSTKVSQEAQKMKGLVTEMAGLFGKINAEIVFAEREAA-YGHLQPHDFGQLTKLCRSILLPISGLATFIDIIQ 95 
                 55666778888888888888888888899999999999999.9999999999999999999877777777666663 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 1.2e-09
      ArAE_2   1 PrPksakrlvrktlaktlselgdlyckvlsfaaerlenphihikae.........rdqirkkilevleklaglkgllvllkfElslkGrwpskkyarlq 90 
                 P P + +  +rk +++     ++ y  v + a+ rl++  ++ +++         +   +k++ ++l  l ++++ ++l+++E+++ G++p+++y  l+
  KKY19381.1 524 PYPITTRLTLRKQIGSCFYLFANYYSCVHTTAQMRLSEDAAKEDETtpgtpafrlAKARSKVFAKILLLLSSIEANSNLVTYEPTFGGKFPKETYDDLI 622
                 88999*****************************99765555555588888888777788999************************************ PP

      ArAE_2  91 alvselvqllarLlvvlkrl 110
                 + ++ l++ +  +  + +++
  KKY19381.1 623 TSLRHLLNYFTLISYATNTF 642
                 ****9999888777776665 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.18
      ArAE_2 130 liadvlavlsmasqaLktGdpLPeilp 156
                 l  d+ ++l ++s +L++ +pLP  l+
  KKY19381.1 687 LSHDITSTLCLLSASLENQHPLPPYLR 713
                 55689999***************8775 PP

>> S1-like  S1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.5e-05      0.14       2      27 ..      34      58 ..      33      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.5e-05
     S1-like  2 rvftGvVTklqdtfGfvDeevfFqrs 27
                ++ +G+VT++   fG ++ e++F  +
  KKY19381.1 34 KM-KGLVTEMAGLFGKINAEIVFAER 58
                45.9*******************865 PP

>> TipAS  TipAS antibiotic-recognition domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.1   3.3e+03      50      73 ..      19      42 ..       6      54 .. 0.75
   2 ?   10.9   0.2   0.00017       0.5      16      52 ..     111     147 ..      99     150 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.1
                XXXXXXXXXXXXXXXXXXXXXXXX CS
       TipAS 50 agkdpdseeaqelaeehralieef 73
                ++ +pds ++ + a++++ l++e+
  KKY19381.1 19 SNLEPDSTKVSQEAQKMKGLVTEM 42
                567899999999998888888764 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00017
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXX CS
       TipAS  16 qeseekiaklskedweelkaelkelfaklaaalaagk 52 
                 +e ++ i+kl+ e+w+++ a ++++ ++l + +++g 
  KKY19381.1 111 EETAAAIKKLTHEEWDDIVASTNDIHEELVSTMQSGL 147
                 5677889**************************9987 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.8      0.24   7.1e+02     307     417 ..     107     216 ..      94     255 .. 0.63
   2 ?   12.8   8.5   1.3e-05     0.038      12     222 ..     359     576 ..     355     708 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.24
        ALMT 307 akvlrelaesvkkmkklskveellkevkvaaeeLqskldskskLlvnsekweaakkkekaeeveekkeeekeseskkeeaeaveeaeseseksllkesk 405
                 ++  +e a ++kk ++++  ++++++ +   eeL s+++s  + ++ + + e+a kk+k  e++   ++  +++   + +++ +  +s  +++++   +
  KKY19381.1 107 MIESEETAAAIKKLTHEEW-DDIVASTNDIHEELVSTMQSGLQHVLYTLRFEKAPKKAKDVEESGGLASPGDRDYAGHVENQLRLFSSSRKSTMQAWCE 204
                 4445677888888888887.8999999999999999999999888888888887777777776666666666666655555555444444444444444 PP

        ALMT 406 rslklskkesap 417
                 r+    + + ++
  KKY19381.1 205 RKGIALPTKFWN 216
                 444444444444 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.3e-05
        ALMT  12 vfslkvGlaltLvsllyflrplykelgk.navWailTVvvvlefsvGATlskGlnRalaTliAGglalgvselasssgkileeivigvsvFiiaalatf 109
                 +f ++v la    ++l +l+   + ++k  ++Wa++ + + + + +G  +s  + R ++T+iA +  l++  +  +      +i+  + vF++ ++   
  KKY19381.1 359 TFGFRVVLATMSLAILAYLESTQNFFVKqRGIWAVIMIAISMSSHAGQGISGFIMRIVGTIIAMCTSLIIWYMGDKRTG---AILPLMYVFTVPFFYVI 454
                 6888999999989999999999898886258********************************9999999888855444...56666667777666665 PP

        ALMT 110 lrliPaikarYdYgvlvflLTFclvv............vsgyrtde....vielAvkRfltiaiGaliclivsifvfPiwaGedLhklvaknleklaks 192
                 ++  P++ +    ++++++ T +l++             s  +  +    ++elA +R+ t+  G +++ i + f +Pi +   L k + + +   a++
  KKY19381.1 455 IK-APQFAP----AAMISMVTPILIIgyelqvrklglaTSESNG-QpyypIYELAPYRLATVCAGLGVAFIWTYFPYPITTRLTLRKQIGSCFYLFANY 547
                 55.344433....4555555555544111111221111222222.123336899*************************99999999999999888887 PP

        ALMT 193 legcvdeyleekekerkileyeakeedsly 222
                  + cv+   +   +e   +e e++   +++
  KKY19381.1 548 YS-CVHTTAQMRLSEDAAKEDETTPGTPAF 576
                 64.666666655555444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       943  (0.0525964); expected 358.6 (0.02)
Passed bias filter:                      637  (0.035529); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.84u 0.38s 00:00:01.22 Elapsed: 00:00:00.54
# Mc/sec: 4545.21
//
Query:       KKY19382.1  [L=415]
Description: hypothetical protein UCRPC4_g04542 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2317  (0.129232); expected 358.6 (0.02)
Passed bias filter:                      643  (0.0358637); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.50
# Mc/sec: 2499.74
//
Query:       KKY19383.1  [L=305]
Description: hypothetical protein UCRPC4_g04543 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.046   13.7   0.0      0.094   12.7   0.0    1.5  1  NAD_binding_9  FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.3e-06     0.094       1      41 [.       6      42 ..       6      76 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.3e-06
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagrv 41
                   ++ GaGp+Glav+ +Ll++     + +i  +dp+  g gr 
     KKY19383.1  6 VVAGAGPAGLAVVGNLLEK---NPNGKILWVDPDFKG-GRF 42
                   578****************...5999*******7776.543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.51
# Mc/sec: 1807.01
//
Query:       KKY19384.1  [L=524]
Description: hypothetical protein UCRPC4_g04544 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.4e-41  140.1   0.0    1.2e-40  139.5   0.0    1.2  1  Pkinase       Protein kinase domain
    3.2e-29  102.0   0.0    9.6e-28   97.2   0.0    2.1  1  Pkinase_Tyr   Protein tyrosine kinase
  ------ inclusion threshold ------
       0.11   12.2   0.0       0.22   11.2   0.0    1.4  1  VirE          Virulence-associated protein E
        3.5    8.0   8.2       0.27   11.6   0.5    2.7  3  Nefa_Nip30_N  N-terminal domain of NEFA-interacting nuclear p


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.5   0.0   2.7e-44   1.2e-40       1     264 []     213     506 ..     213     506 .. 0.85

  Alignments for each domain:
  == domain 1  score: 139.5 bits;  conditional E-value: 2.7e-44
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH......HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH.HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke......kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle.rk 92 
                 y+  +++G G+f++V +a+ + t+++ AvK+++++  +k++        ++ +E+++ + lkh++i+ l  v++++   + +  +  gg+l+dl++ ++
  KKY19384.1 213 YVIGKQIGFGGFSVVKEAF-QGTRRKLAVKIVRRNIGSKNESeneaaqAEFEHEVELWRFLKHKHILPLEAVYKTDFATFCFIPLNVGGTLFDLVRsNR 310
                 67789**************.7***********986544444445567788999*********************9999999999999*********555 PP

                 SS--HHHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTE...EEE-SGTTSEESSSSCS....................BCTT.TSCGGGS-H CS
     Pkinase  93 gslseeeakkiakqilegleylH.skgiiHrDlKpeNiLidekge...lKitDFGlakelesssk....................ltsf.vgtseYlAP 166
                 + l+ + a ++ +q++++++ylH ++++ HrD+K eN L+d +g+   ++++DFG+a+ l+ +++                    ++ f  g+ eY AP
  KKY19384.1 311 QGLPLDMALRYSAQLASAIRYLHeDAHVAHRDVKLENCLLDLSGDvpvIRLCDFGMAEWLSFDTDtyhplserppqkamgpsessTNAFgGGSLEYAAP 409
                 55*********************7778**************8887899*************999999***************997444415799***** PP

                 HHH.......TTSCB..SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHH CS
     Pkinase 167 Evl.......keney..skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltae 256
                 Evl       ++++y  s++vDvW+ Gv +y ++ g  pf+++ +             ++ il       + +++  +e++++++ +l+++ ++R+t++
  KKY19384.1 410 EVLrsndmppSASGYpvSAAVDVWAFGVCVYAMVVGDRPFQSSFQP----------RVTMSILSGDWDRDRLQQKGGDEVLEMMEGCLTMEVEERWTIR 498
                 ***88887774455555************************22222..........233456654344555666679********************** PP

                 HHHTSGGG CS
     Pkinase 257 ellqhpyl 264
                 +++++++l
  KKY19384.1 499 DVIESSWL 506
                 ******97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.0   2.1e-31   9.6e-28       3     257 ..     215     502 ..     213     503 .. 0.78

  Alignments for each domain:
  == domain 1  score: 97.2 bits;  conditional E-value: 2.1e-31
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST.......TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlke.......eateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLr 93 
                  +gk++G G f+ V e+        ++ k avK++++       + +e  ++e+ +e+++ + lkh++i+ l +v+  +  ++  + +  gG+L + +r
   KKY19384.1 215 IGKQIGFGGFSVVKEAFQG-----TRRKLAVKIVRRnigskneSENEAAQAEFEHEVELWRFLKHKHILPLEAVYKTDFATFCFIPLNVGGTLFDLVR 307
                  6899*********999887.....7788888888542222111444445899************************999999999************* PP

                  HTCTTTSBHHHHHHHHHHHHHHHHHHHHT.TEEEST-SGGGEEEEE...TTEEEE-STTTHEETTTSSEE................EETTSST....S CS
  Pkinase_Tyr  94 kkekekltlkdllsfalqvAkGmeyLesk.klvHrdlaarNvLlse...nkvvkisDfGLardiekddey................vkkeeak....l 167
                  ++ ++ l l+  l++++q+A++++yL++  ++ Hrd+   N+Ll+      v++++DfG+a+ ++ d ++                ++++  +     
   KKY19384.1 308 SN-RQGLPLDMALRYSAQLASAIRYLHEDaHVAHRDVKLENCLLDLsgdVPVIRLCDFGMAEWLSFDTDTyhplserppqkamgpsESST--NafggG 402
                  *9.***********************9762688***********96332569**********9954444414544433332222211111..111224 PP

                  GGGGS-HHHHHHSE.........EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH..HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHH CS
  Pkinase_Tyr 168 pvkWmapEslkekk.........ftsksDvWsfGvllwEiftlgespypglkneevlekl..kegkrlekpekcpeelyelmkkcweedpeeRptfse 254
                  ++++ apE+l+++          ++ + DvW+fGv+++ ++  g++p+++  + +v+  +   +  r +  +k  +e+ e+m+ c++ + eeR t+++
   KKY19384.1 403 SLEYAAPEVLRSNDmppsasgypVSAAVDVWAFGVCVYAMVV-GDRPFQSSFQPRVTMSIlsGDWDRDRLQQKGGDEVLEMMEGCLTMEVEERWTIRD 499
                  567779999998889******999**************9998.******99665555555244456777788889********************999 PP

                  HHH CS
  Pkinase_Tyr 255 lve 257
                  ++e
   KKY19384.1 500 VIE 502
                  876 PP

>> VirE  Virulence-associated protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.9e-05      0.22      68     103 ..     458     493 ..     448     501 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.9e-05
        VirE  68 fleklgeewftdslksvedkdavekiqgvliveiaE 103
                 ++++l+++w  d l+++ +++ +e+++g+l +e++E
  KKY19384.1 458 TMSILSGDWDRDRLQQKGGDEVLEMMEGCLTMEVEE 493
                 57899****************************998 PP

>> Nefa_Nip30_N  N-terminal domain of NEFA-interacting nuclear protein NIP30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.5     6e-05      0.27      32      63 ..       6      38 ..       1      49 [. 0.80
   2 ?    0.4   0.1      0.18   8.1e+02       1      28 [.     147     174 ..     147     180 .. 0.83
   3 ?   -2.6   0.2       1.6   7.1e+03      51      61 ..     255     265 ..     246     270 .. 0.45

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6e-05
  Nefa_Nip30_N 32 eeaeee.edgksLyerLqenkaaKqeefeeklk 63
                  e+++++   g+sL e ++e+k++ q+++ e+ k
    KKY19384.1  6 EKPRKTrPRGRSLLEEMAEEKTRSQRAYSESDK 38
                  4555555789********************987 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.18
  Nefa_Nip30_N   1 Fvseseleeereerqeewekarkeleae 28 
                   F s+++ + ++++rq+ w++ r++ ++ 
    KKY19384.1 147 FFSTETSSMKSARRQSSWRSYRQPSNSA 174
                   78899999999999******99988766 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.6
  Nefa_Nip30_N  51 kaaKqeefeek 61 
                    +a q+efe +
    KKY19384.1 255 NEAAQAEFEHE 265
                   22333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.51
# Mc/sec: 3094.24
//
Query:       KKY19385.1  [L=580]
Description: putative alternative nadh-dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-53  181.3   0.0    4.8e-53  180.3   0.0    1.5  2  Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
    9.4e-11   42.1   0.2    4.4e-09   36.8   0.0    3.4  3  Pyr_redox    Pyridine nucleotide-disulphide oxidoreductase
     0.0056   16.0   0.1        2.8    7.1   0.0    2.7  3  Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
       0.13   12.1   0.4       0.25   11.1   0.0    1.6  2  UPF0193      Uncharacterised protein family (UPF0193)


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.64   2.9e+03     145     157 ..      83      98 ..      46      98 .. 0.65
   2 !  180.3   0.0   1.1e-56   4.8e-53       2     294 .]     116     450 ..     115     450 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.64
                  E...EEES-SHHHHHH CS
                  x...xxxxxxxxxxxx RF
  Pyr_redox_2 145 i...vvvGgGyiGvEl 157
                  i   ++ G+Gy G E+
   KKY19385.1  83 IylsAIAGAGYLGYEV 98 
                  1555899******986 PP

  == domain 2  score: 180.3 bits;  conditional E-value: 1.1e-56
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH...HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC.... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias...evvkklnqgielllgeevvkidpgkkkvklekkke.... 92 
                   +v++G G++ +++ ++l + +++v+++ + ++++++++ll++  +g+ e+++i++   + ++  +++++++ + e++kid+++kkv +++++     
   KKY19385.1 116 TLVILGTGWGSVSLLKKLDTENYNVVVI-SPRNFFLFTPLLPSCTTGTIEHRSIMEpirNIIRHKKTSVQYYEA-EATKIDYQNKKVYISDDSPvkge 211
                  58**************************.*****************************9888888899**9999.**************777668888 PP

                  TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T..................SEEEEES-SHHHHHHHHHHHHHT-...... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxx...... RF
  Pyr_redox_2  93 gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp..................krivvvGgGyiGvElAaalaklgk...... 166
                   +++++ +d lv+  G+++ ++gipGv+e+ ++l +++ +a+++++  ++                   ++vvvGgG++GvE+A++l ++ +      
   KKY19385.1 212 TSNTEVPFDMLVVGVGAENATFGIPGVKEHSCFL-KEVGDAQQIRKRIMDcvetavfkdqtdeererlLHMVVVGGGPTGVEFAGELQDFFVddlkkw 308
                  66778999**************************.******************************998899****************99877789999 PP

                  ........EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCE....EEESEEEE-S-EEES-HHCS..HCCT- CS
                  ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxx..xxxxx RF
  Pyr_redox_2 167 ........evtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgee....idadlvvvavGvrpstelle..eklgl 250
                          +vtlvea++++l+++ k+l ++ e  +++e + ++++t+vk+++++  ++e ++ dg++    i++ l+v+a+G   ++  ++  +++  
   KKY19385.1 309 vpdianqfHVTLVEALPNVLPMFSKQLIDYTESTFKEEHISIRTKTMVKNVTDRYIEAESTNPDGTKklerIPYGLLVWATGNAVRDLVKDliNQIPA 406
                  999**999********************************************9999888888888888999***************9999899***** PP

                  EEEETTEEE--TTSBES.STTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 251 elderggivvdeflrtn.vpgiyaiGDvaggkggpelaqaAvqqG 294
                  + ++r+g+ v+e+l +n  ++i+a+GD+a   +   +aq+A+q+G
   KKY19385.1 407 QKNSRRGLAVNEYLVVNgTENIWAVGDCA-VANYAPTAQVASQEG 450
                  ****************99***********.889999******998 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.35   1.5e+03       3      14 ..      87      98 ..      86     100 .. 0.90
   2 ?    0.1   0.0      0.28   1.3e+03       2      39 ..     117     156 ..     116     200 .. 0.80
   3 !   36.8   0.0   9.9e-13   4.4e-09       1      67 [.     280     360 ..     280     370 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.35
                EEECSSHHHHHH CS
   Pyr_redox  3 vvvGgGyiglEl 14
                ++ G+Gy+g E+
  KKY19385.1 87 AIAGAGYLGYEV 98
                699******996 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.28
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS..TTSS CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkll..rllD 39 
                 +v++G G+  + l + l   + +V v+  ++ +l  +ll+
  KKY19385.1 117 LVILGTGWGSVSLLKKLDTENYNVVVISPRNFFLftPLLP 156
                 7999999999999999999999999999999888555555 PP

  == domain 3  score: 36.8 bits;  conditional E-value: 9.9e-13
                 EEEEECSSHHHHHHHHHH............HHTT..SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgal............aelg..kkVtvversdkllrllDeeaskilqeklekngievllntkveeie 67 
                 ++vvvGgG +g+E+Ag+l             +++   +Vt+ve+ +++l+++ +++ ++++  +++++i ++++t v++++
  KKY19385.1 280 HMVVVGGGPTGVEFAGELqdffvddlkkwvPDIAnqFHVTLVEALPNVLPMFSKQLIDYTESTFKEEHISIRTKTMVKNVT 360
                 79****************77777666555533334349****************************************998 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.31   1.4e+03     217     248 ..     171     203 ..     156     225 .. 0.64
   2 !    7.1   0.0   0.00063       2.8       1      20 [.     282     301 ..     282     306 .. 0.88
   3 !    5.7   0.0    0.0017       7.7      80     110 ..     332     362 ..     312     392 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.31
  Pyr_redox_3 217 rleelvke..ekikvlfnaevkeikekeeeykvk 248
                   +++++++  ++++ +++ae+++i+ +++++ ++
   KKY19385.1 171 PIRNIIRHkkTSVQ-YYEAEATKIDYQNKKVYIS 203
                  44555555322233.4555666777666666554 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00063
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkag 20 
                  +++G+GP G+++a el+++ 
   KKY19385.1 282 VVVGGGPTGVEFAGELQDFF 301
                  79**************9875 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0017
  Pyr_redox_3  80 rkealeYlrevaksfelpiklfeeVesvkke 110
                   k++ +Y+++  k+++++i+++++V++v+  
   KKY19385.1 332 SKQLIDYTESTFKEEHISIRTKTMVKNVTDR 362
                  57899***********************974 PP

>> UPF0193  Uncharacterised protein family (UPF0193)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       1.7   7.7e+03      85     127 ..      29      73 ..       9      75 .. 0.56
   2 ?   11.1   0.0   5.7e-05      0.25      99     183 ..     426     507 ..     402     514 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.7
     UPF0193  85 vraklakkakkrsaeqieasgaYerekyrpsatrdl..ekeKrrL 127
                  + ++a++ + rsa +  a++   r  y  ++t +l  e +K+r+
  KKY19385.1  29 LQRSRAQAGSGRSAIARVAQQQSFRRTYADAPTVSLspEPKKKRF 73 
                 444445566666666655555555666766666666556666665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 5.7e-05
     UPF0193  99 eqieasgaYerekyrpsatrdl.e.keKrrLqnimAtgkdlkekkpkkknvkkeeeeevkevDrfeelvkeIeeRkeFLeeMeaLGq 183
                 e+i a g+    +y p a+    e     rL n+mA    ++  + k  + ++   +   + D    +++eIeeR+  L   +++G 
  KKY19385.1 426 ENIWAVGDCAVANYAPTAQVASqEgAFLARLFNTMAKTDAIEA-QLKDLSTQQ--AS--AKPDDRGAVLDEIEERQRQLRRIKQIGP 507
                 5666777777777877776666442446899999997777774.444444444..33..46888899************99999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 3739.47
//
Query:       KKY19386.1  [L=656]
Description: putative protein phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-61  207.9   0.1    1.8e-50  172.0   0.1    3.1  2  PP2C       Protein phosphatase 2C
  ------ inclusion threshold ------
      0.078   13.0   0.7       0.18   11.8   0.7    1.6  1  Rota_NS26  Rotavirus NS26


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   2.2e-11     2e-07      28     110 ..     226     330 ..     199     333 .. 0.73
   2 !  172.0   0.1   2.1e-54   1.8e-50     107     257 ..     387     526 ..     339     527 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2.2e-11
                 T...........................CCCCCCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHCHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHCCT CS
        PP2C  28 s...........................sgkssvsffavfdghggseaakyarehleeilksqksfeelekleqalrksfladtdeelksskantepsk 99 
                                               + + ++fa+fdgh+g+ aa++++++l+ il++   +++ + + + l +++ + +d++l++        +
  KKY19386.1 226 TpapsipsdakseskssitsdsteasqhVIETDNGYFAIFDGHAGTFAAEWCGKKLHIILEEMMRKQPNTPVPELLDQAYTS-ADQQLEK-LP---LKN 319
                 44555555555555555555544444334467889**********************9999999999999999999999999.8888888.33...478 PP

                 -EEEEEEEEEE CS
        PP2C 100 sGstavvalir 110
                 sG+ta++a++r
  KKY19386.1 320 SGTTAITAVLR 330
                 *******9986 PP

  == domain 2  score: 172.0 bits;  conditional E-value: 2.1e-54
                 EEEETTE.EEEEEESS-EEEEEETTEEEEECS---STTSHHHHHHHHHTT--EEECCEEETTTBSBSB-EE-GGGTCCCCCCSTSB---EEEEEEE-TT CS
        PP2C 107 alirgtk.lyvAnvGDSravLcrkgnakkeltedHkpsdedEreRIeeaggsvsngegrvngsLavsRalGDlelkpketeeqlvsaePdvtsvkltee 204
                 a  + ++ ly+AnvGD+r+vLcr+g+a  +l++dHk+sde+E +RI +agg +   ++rvng+Lav+RalGD +lk+      lv+ +P++t++ ++++
  KKY19386.1 387 AAASRQRvLYTANVGDARIVLCRNGKAL-RLSYDHKGSDENEGKRIANAGGLIL--NNRVNGVLAVTRALGDSYLKD------LVTGHPYTTETVIQPD 476
                 33444448*******************9.*************************..********************9......**************** PP

                 .EEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCHHCH CS
        PP2C 205 .defliLacdGlwdvlsdqeavdlvrdelekkkspeevaeelvdeaiargsedn 257
                  defliLacdGlwdv sdqeavdl+r+  +    p+ +++ lvd+a++r s+dn
  KKY19386.1 477 iDEFLILACDGLWDVCSDQEAVDLIRNLQD----PQAASKLLVDHALSRFSTDN 526
                 *************************98777....*******************9 PP

>> Rota_NS26  Rotavirus NS26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.7     2e-05      0.18      80     145 ..     575     642 ..     549     654 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2e-05
   Rota_NS26  80 sagvslDaiqekdetvdqvDeslmkwml.dshdGisln.gginfskskskskekeksktenkskknvs 145
                 s  vs Da+ + d + d+v + ++k m  +s+ G +l   g+++++    s+ k++ k + ks ++ +
  KKY19386.1 575 SGIVSTDAVAATDGSADEVKHDIIKEMNeESEPGNELTpEGLDSARKSLSSEAKNETKADLKSDTKTE 642
                 4569*********************9973588899997357999888888888999999999999843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.49
# Mc/sec: 4012.47
//
Query:       KKY19387.1  [L=703]
Description: putative capsular associated [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-15   55.6   2.0      2e-07   30.3   0.3    3.9  3  Glyco_transf_90  Glycosyl transferase family 90


Domain annotation for each model (and alignments):
>> Glyco_transf_90  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1   7.4e-05       1.3       9      94 ..     153     236 ..     146     271 .. 0.70
   2 !   30.3   0.3   1.1e-11     2e-07     104     281 ..     367     584 ..     348     590 .. 0.83
   3 !   13.9   0.0     1e-06     0.019     280     323 ..     606     649 ..     596     655 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 7.4e-05
  Glyco_transf_90   9 yfrvieeDLkpwret..gitreavera..krkal.frlviingrvyvekykksvqtrdvftiwgilqLlrkypgklpDlelmfncdDrPvv 94 
                       f +i +DL+p+  +   + r + +++  k+ a    l i ngrv   +     +    + i   ++L+ ++  +lpD+++ +n  D+P +
       KKY19387.1 153 DFDQIMDDLRPFWAIepKVLRRHAAHMweKDGAGaSGLHIRNGRVSNIT---NTG----WRIETFQKLVERFVEHLPDMDIAMNRLDQPRI 236
                      5888999999987733333333333332333332133555556554333...333....44888899**********************87 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 1.1e-11
  Glyco_transf_90 104 aappPlfsycgdeetlDivfPdwsfwgwpevnikrwslllkelkegnkkvkweerepyaywkGnps........vae.tReeLlkc.nrskkel 187
                      ++ +P+f  c+ + + Di+fP+  +           + ++ +  + ++ + we+++ +  w+G  s         a+ +R+ L+++ n ++ ++
       KKY19387.1 367 HELIPIFGECKVNVNSDILFPANMYF---------KEDDRYDY-NPEEDLDWEDKSETMMWRGVTSggvqvednWARmHRQRLVRLvNSTHMAD 450
                      47899999999999999999986655.........34445555.55667889999999999885432222111123347*****9736778899 PP

  Glyco_transf_90 188 vdarltkq...........................................dekkeskegvkessledqckhkYkiyieGvaasvsekyilacd 238
                       ++++ +q                                           d      +   ++ l+ q+k k+ i ++G + s + +  l  +
       KKY19387.1 451 KEVKILTQspkppnkydptvyetfhrfapsrfaekhtdvgftepmscvpncDFYIDVFSWKPQITLSAQFKSKFLIDVDGHSFSGRWRAFLQSK 544
                      9*****99*****************************************995555566667789****************************** PP

  Glyco_transf_90 239 slvllvkpeyydffsreLkplehYvPikskdklrdlkeavdwg 281
                      sl l+  + + ++  + L +++h+vP+++  + +dl  +++w+
       KKY19387.1 545 SLGLKA-TIFREWHDSRLFAWRHFVPVDN--RYDDLYSLLTWL 584
                      ***985.79******************99..899999999996 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 1e-06
  Glyco_transf_90 280 wgnahdekaqeiaeegseFireeLkmddvydYmfhLlteYakll 323
                      +  +hd + + ia++g+e++++ L+ +d+  Y f+Ll eY++++
       KKY19387.1 606 YIPSHDFEGKLIANQGREWANKVLRREDIEVYTFRLLLEYGRIV 649
                      7778999*********************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 4624.25
//
Query:       KKY19388.1  [L=219]
Description: putative 50s ribosomal subunit protein l15 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-15   57.0   0.1    5.1e-15   56.3   0.1    1.3  1  Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27
  ------ inclusion threshold ------
      0.017   15.3   0.0        1.9    8.8   0.0    3.0  3  HTH_17          Helix-turn-helix domain
       0.12   12.5   0.0        4.4    7.5   0.0    2.4  2  MerR_1          MerR HTH family regulatory protein


Domain annotation for each model (and alignments):
>> Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.1   8.5e-19   5.1e-15      45     128 .]      18     101 ..       2     101 .. 0.87

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 8.5e-19
                     ..---EEEEHHHHHHTTTTGTTS------EEEGGGTTTTSSS.....SEEEE--S..---.--EEEESEE-HHHHHHHHHTT-EEEE CS
  Ribosomal_L27A  45 fkkeykvvnlkdLdelideerleladeaeeidleelaeaglikk.kdgvKvlgkg..eltkklkvkaskfSkkAkekIeaaGGkvel 128
                     +++e + vnl++++++i+++rl   d++++i+l el++++ i++ kdgvK+l++g   l++++++ +s++S+ A++++e+ GG+v++
      KKY19388.1  18 HAEELSKVNLDRIQDWINQGRL---DPSKPITLYELVKSNAIHGiKDGVKLLARGatVLSTPINIVVSRASQFAISAVEKLGGTVVT 101
                     357889****************...7789**************99*********98667999**********************985 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00031       1.9       3      31 ..      15      43 ..      15      46 .. 0.86
   2 ?    2.5   0.0     0.029   1.7e+02      17      33 ..      46      62 ..      45      70 .. 0.83
   3 ?   -0.4   0.0      0.23   1.4e+03      35      50 ..      98     116 ..      88     117 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00031
      HTH_17  3 tveEaAelLgvsrstvyrlirrgelpaak 31
                t++ a el +v    ++++i++g+l + k
  KKY19388.1 15 TTSHAEELSKVNLDRIQDWINQGRLDPSK 43
                67777889999999***********9998 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.029
      HTH_17 17 tvyrlirrgelpaakiG 33
                t+y+l++++ +   k G
  KKY19388.1 46 TLYELVKSNAIHGIKDG 62
                9**********777755 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.23
      HTH_17  35 r...wriprsdleewlekr 50 
                     +++++ ++ + l+++
  KKY19388.1  98 TvvtRYYTKHSIRRILQRK 116
                 4455899999999999885 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0   0.00073       4.4       3      30 ..      16      43 ..      15      71 .. 0.90
   2 ?    2.6   0.0     0.025   1.5e+02      36      47 ..     102     113 ..      86     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00073
                HHHHHHHHTS-HHHHHHHHHHTT-S-EE CS
      MerR_1  3 igevakilgvtthtlrywekegllkpkr 30
                 + + +++ v+ + ++ w ++g l p++
  KKY19388.1 16 TSHAEELSKVNLDRIQDWINQGRLDPSK 43
                578899********************98 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.025
                 EEEEHHHHHHHH CS
      MerR_1  36 ryYtdedierLk 47 
                 ryYt++ i+r+ 
  KKY19388.1 102 RYYTKHSIRRIL 113
                 9*******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1508.68
//
Query:       KKY19389.1  [L=580]
Description: putative regulator of chromosome condensation rcc1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00014   21.5   6.9       0.02   14.7   1.1    3.8  3  RCC1_2    Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.3   0.2    0.0083   1.5e+02       2      24 ..      40      62 ..      39      65 .. 0.82
   2 !    5.3   0.0     0.001        18       1      21 [.     101     121 ..     101     123 .. 0.85
   3 !   14.7   1.1   1.1e-06      0.02       1      28 [.     327     356 ..     327     358 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.0083
      RCC1_2  2 ksvsaGdyHscaLtedGeVlcWG 24
                +++ +G+  + +Lt+ Ge+++ G
  KKY19389.1 40 ADLQCGGWSTSILTSKGEIWSVG 62
                677788877778********987 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.001
      RCC1_2   1 VksvsaGdyHscaLtedGeVl 21 
                 +k+ s+G++H ++L++ G+++
  KKY19389.1 101 IKQFSSGRRHLLGLDDVGNIW 121
                 7999**********9866665 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 1.1e-06
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsN..sd 28 
                 V+s+++GdyH+ aL+++G + ++G++  ++
  KKY19389.1 327 VISLAFGDYHFHALHSNGLISSYGHEaiNC 356
                 89********************99874445 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 3588.68
//
Query:       KKY19390.1  [L=206]
Description: hypothetical protein UCRPC4_g04550 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-06   26.7   9.5    7.4e-06   25.7   9.5    1.5  1  Rick_17kDa_Anti  Glycine zipper 2TM domain
  ------ inclusion threshold ------
      0.072   12.8   0.2       0.11   12.2   0.2    1.3  1  TraT             Enterobacterial TraT complement resistance p
       0.43   10.4  14.5        1.8    8.4  15.0    1.8  2  Gly-zipper_YMGG  YMGG-like Gly-zipper
        4.3    7.4  16.7      0.066   13.2   9.6    1.6  2  Gly-zipper_Omp   Glycine zipper


Domain annotation for each model (and alignments):
>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   9.5   1.6e-09   7.4e-06       3      38 ..     141     177 ..     139     179 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.6e-09
  Rick_17kDa_Anti   3 aliGAaaGgvaGaai.gggggrvlGavvGAaaGavaG 38 
                      +l+GAaaG+  G+ + ++ g+++lG+++GA++G++a 
       KKY19390.1 141 GLLGAAAGAWGGHHFgKNAGHGLLGTIGGAIVGSLAE 177
                      799************888****************985 PP

>> TraT  Enterobacterial TraT complement resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   2.5e-05      0.11      94     134 ..     139     179 ..     116     181 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.5e-05
        TraT  94 agaaagaaigaanggsagaalggglvGglvgaiagalvedv 134
                 + + +gaa+ga  g+++g+ +g gl+G + gai+g+l ed+
  KKY19390.1 139 ERGLLGAAAGAWGGHHFGKNAGHGLLGTIGGAIVGSLAEDK 179
                 44566777777777778888888888888888888888875 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  15.0    0.0004       1.8       7      39 ..     141     176 ..     135     179 .. 0.77
   2 ?    5.2   4.1     0.004        18       6      22 ..     161     177 ..     159     192 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0004
                      XXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXX CS
  Gly-zipper_YMGG   7 AaiGAaaGAvvGaliGsgggkG...AaiGAaaGala 39 
                      ++ GAaaGA +G  +G+++g+G   ++ GA +G la
       KKY19390.1 141 GLLGAAAGAWGGHHFGKNAGHGllgTIGGAIVGSLA 176
                      688999999999999977777544488888888776 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.004
                      XXXXXXXXXXXXXXXXX CS
  Gly-zipper_YMGG   6 GAaiGAaaGAvvGaliG 22 
                       ++ G+++GA+vG l+ 
       KKY19390.1 161 HGLLGTIGGAIVGSLAE 177
                      57899********9987 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   9.6   1.5e-05     0.066       2      33 ..     144     175 ..     142     178 .. 0.89
   2 ?   -4.0   0.6       3.6   1.6e+04      14      23 ..     192     201 ..     191     203 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.5e-05
  Gly-zipper_Omp   2 GaaiGAaaGaliGgavggrgtGaliGAavGaa 33 
                     Gaa+GA  G  +G+++g+   G+++GA+vG +
      KKY19390.1 144 GAAAGAWGGHHFGKNAGHGLLGTIGGAIVGSL 175
                     99999999999999999999999999999976 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 3.6
  Gly-zipper_Omp  14 GgavggrgtG 23 
                     G  +gg+ +G
      KKY19390.1 192 GHSSGGSSWG 201
                     4456777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1449.66
//
Query:       KKY19391.1  [L=917]
Description: putative sh3 domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (917 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       906  (0.0505327); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.53
# Mc/sec: 5207.18
//
Query:       KKY19392.1  [L=361]
Description: putative nuclear protein snf4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-23   80.5   8.7    1.5e-11   44.5   0.1    4.3  4  CBS       CBS domain


Domain annotation for each model (and alignments):
>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00039       7.1       8      56 ..      71     120 ..      63     121 .. 0.85
   2 !   22.4   0.1   6.9e-09   0.00012       8      56 ..     153     206 ..     141     207 .. 0.85
   3 !    9.2   0.5   9.1e-05       1.6      11      42 ..     233     264 ..     227     279 .. 0.76
   4 !   44.5   0.1   8.6e-16   1.5e-11       9      56 ..     303     350 ..     289     351 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00039
                 SCEEEETTSBHHHHHHHHHHHT.SSEEEEEETTTB.EEEEEEHHHHHHHHH CS
         CBS   8 dvvtvppdttleealelmrekg.vsrlPVVdedgk.lvGivtlrDllrall 56 
                 ++++++   t++e l++++++g v + P  d+    + G++t +D ++++ 
  KKY19392.1  71 RLIVFDTGLTVKESLNILIQNGiV-SAPLWDSATSvFAGLLTVTDYINVIQ 120
                 678999999********99***66.99***98885488*******998875 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 6.9e-09
                 SCEEEETTSBHHHHHHHHHHHTSSEEEEE...ETTTB..EEEEEEHHHHHHHHH CS
         CBS   8 dvvtvppdttleealelmrekgvsrlPVV...dedgk..lvGivtlrDllrall 56 
                 + v+++p+ +l +a ++m +++ +r+P +   d  g+  +v +vt+  +l++++
  KKY19392.1 153 ETVSIDPERPLYDACRKMLKSRARRIPLIshdDQTGRptVVNVVTQYRILKFIA 206
                 4489**************999999***998865555688************996 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 9.1e-05
                 EEETTSBHHHHHHHHHHHTSSEEEEEETTTBE CS
         CBS  11 tvppdttleealelmrekgvsrlPVVdedgkl 42 
                  ++ dt + e++ +m+++ +s++P+V  +g +
  KKY19392.1 233 KASMDTLVIEIIHMMVKRSISSVPIVTLEGVV 264
                 6677888********8888******9767744 PP

  == domain 4  score: 44.5 bits;  conditional E-value: 8.6e-16
                 CEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHHHHH CS
         CBS   9 vvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllrall 56 
                 + t+++d+ l  ++e++r+++v+rl VVd+++++ G+++l+D+l+++l
  KKY19392.1 303 IYTCTEDDGLDTIFETIRRSRVHRLVVVDDNNNFKGVLSLSDILEYIL 350
                 36***********************889******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2628.15
//
Query:       KKY19393.1  [L=256]
Description: putative gtpase activating protein rga6 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 1676.87
//
Query:       KKY19484.1  [L=549]
Description: putative golgi to endosome transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-46  157.1   0.4    2.9e-46  156.6   0.4    1.3  1  ENTH      ENTH domain
    8.3e-05   21.7   0.1    0.00011   21.3   0.1    1.2  1  ANTH      ANTH domain
  ------ inclusion threshold ------
       0.06   13.4   0.3       0.06   13.4   0.3    2.2  2  DUF5102   Domain of unknown function (DUF5102)


Domain annotation for each model (and alignments):
>> ENTH  ENTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.6   0.4   4.9e-50   2.9e-46       1     123 [.      32     154 ..      32     156 .. 0.98

  Alignments for each domain:
  == domain 1  score: 156.6 bits;  conditional E-value: 4.9e-50
                 --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSHHHHHHHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---B-T CS
        ENTH   1 yseteskvreatnndpwGpsnkllteiarltyskkelseiisvitkrLqnnkgkewrsvlKaLtlieYLlknGseqvidwlkenisiiktlsefkyide 99 
                 y+e+e+kvreatnn+pwG+s++l++ei++ t+s++ l+ei+ +i+kr+++++ +ewr+++KaL+l+e+L+knGse+vid++++++s++++l++f+y+d+
  KKY19484.1  32 YTEMEQKVREATNNEPWGASSTLMQEISNGTHSYQLLNEIMPMIYKRFTDKTAEEWRQIYKALQLLEFLIKNGSERVIDDARSHLSLLRMLRQFHYVDQ 130
                 799*********************************************99************************************************* PP

                 TS-B-HHHHHHHHHHHHHHHT-HH CS
        ENTH 100 egkdeglniRkkakkiislledee 123
                 +gkd+g+n+R++a+++++ll+d +
  KKY19484.1 131 NGKDQGINVRNRAQELAKLLNDVD 154
                 *********************976 PP

>> ANTH  ANTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   1.9e-08   0.00011       2     109 ..      35     141 ..      34     169 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.9e-08
                 HHHHHHHHT-SSS---HHHHHHHHHHHCSTTS-HHHHHHHHHHHCTSS...SHHHHHHHHHHHHHHHHHS-CHHHHHHHHTT-----TT---TSHHHST CS
        ANTH   2 levavvKAtshdevPpkekhvreilvltssrekvaalvwalsrrlklt..rnwvvalKaLilvHklLreGhpsveqellsarrrisellnlssfddsss 98 
                 +e+ v+ At+ +   +   +++ei  +t+s + +++++ ++ +r +++  ++w + +KaL l+  l++ G+++v+ ++ s+ + ++ l +++      +
  KKY19484.1  35 MEQKVREATNNEPWGASSTLMQEISNGTHSYQLLNEIMPMIYKRFTDKtaEEWRQIYKALQLLEFLIKNGSERVIDDARSHLSLLRMLRQFHY-V--DQ 130
                 678899************************999***********98752258***********************999888886666666666.2..35 PP

                 HHHHHHHHHHH CS
        ANTH  99 kswdysafira 109
                 +++d++ ++r+
  KKY19484.1 131 NGKDQGINVRN 141
                 67777777765 PP

>> DUF5102  Domain of unknown function (DUF5102)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.9      0.33     2e+03       9      57 ..     221     277 ..     216     286 .. 0.38
   2 ?   13.4   0.3     1e-05      0.06       2      82 ..     293     388 ..     292     413 .. 0.53

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.33
     DUF5102   9 eegaeaeddddFgDFd...dgfqeee.........aeeseeaeeeepaepsasslsfplld 57 
                 ++++  +  d F+++d   dg +  +         +  ++ ++++++a+ ++++ ++ l d
  KKY19484.1 221 ADAQ--RGSDKFEEYDegdDGGSSRNpeparraasV--NTIKRDAAKAARAKAEPEVDLFD 277
                 4443..334667777733222222222344432210..11111111112222223334444 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1e-05
     DUF5102   2 gdDfddFeegaeaeddddFgDFddgfqeee.................aeeseeaeeeepa.epsasslsfplldfesldlesdllaaleeeldelfpps 82 
                 +dDf   e++  a+ dd+F+DF+   + ++                 a  ++++++++++ +++++++ ++   f++l +++++  + ++ + ++ +p+
  KKY19484.1 293 QDDFGTLESSSAANGDDEFDDFQT-AETPAaapaaplsglsvlspppA--TTSTTTSTTQfAAPKPVSGTQSSSFNDLFSTKSPGPTSSSGIASVTSPQ 388
                 6888888888878999******94.22222233455555555444321..1111222222233334444444555555555555555555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.47
# Mc/sec: 3479.04
//
Query:       KKY19485.1  [L=648]
Description: putative calcium calmodulin-dependent protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-74  249.0   0.0      8e-74  248.3   0.0    1.3  1  Pkinase         Protein kinase domain
    1.3e-37  129.5   0.0      3e-37  128.3   0.0    1.6  1  Pkinase_Tyr     Protein tyrosine kinase
     0.0018   18.2   0.0       0.38   10.6   0.0    2.9  3  APH             Phosphotransferase enzyme family
     0.0027   17.1   1.1          3    7.1   0.0    3.0  3  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.022   13.5   0.0      0.057   12.2   0.0    1.7  2  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.3   0.0   2.2e-77     8e-74       2     264 .]     123     410 ..     122     410 .. 0.92

  Alignments for each domain:
  == domain 1  score: 248.3 bits;  conditional E-value: 2.2e-77
                 EEEEEEEEESSEEEEEEEETT.TTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   2 ekleklGeGsfGkVykaveke.tgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                 + +ek+G G+f++Vyka++++ +  +vAvK+++k +++++++ ++l+E++i+++l+hpniv+l+++ e+ +++y+vle+++ggel++ + r + +se+ 
  KKY19485.1 123 TLIEKMGDGAFSNVYKARDNTgKYGEVAVKVVRKFEMNSNQRANILKEVQIMRQLDHPNIVKLVDFSESRQYYYIVLELCPGGELFHQIVRLTYFSEDL 221
                 6789**************75413458****************************************************************9999***** PP

                 HHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEET.................................TTEEEE-SGTTSEESSSSCSBCTTTSCGGGS CS
     Pkinase 100 akkiakqilegleylH.skgiiHrDlKpeNiLide.................................kgelKitDFGlakelessskltsfvgtseYl 164
                  +++++q++++leylH +kg++HrD+KpeN+L+                                    g++Ki+DFGl+k +  ++ +++ +gt  Y 
  KKY19485.1 222 SRHVITQVAQALEYLHeEKGVVHRDIKPENLLFYPvpfvptknpkprgpedeekadegefipgvgsggIGQIKIADFGLSKVVWDTQ-TMTPCGTVGYT 319
                 ****************6677**************779**************99999988888888777777*************988.9********** PP

                 -HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSG CS
     Pkinase 165 APEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeaseiseeakdllkkllkkdpkkRltaeellqhp 262
                 APE++k+++ysk+vD+W+lG++ly+ll+g ppf++e+      + l++     k+ + ++++ +p++++is++a+dl++ ll+++p kR+t++e l+hp
  KKY19485.1 320 APEIVKDERYSKSVDMWALGCVLYTLLCGFPPFYDES-----IQVLTE-----KVARgQYTFLSPWWDDISKSAQDLVSHLLTVNPDKRYTIREFLNHP 408
                 **********************************222.....233333.....44444899************************************** PP

                 GG CS
     Pkinase 263 yl 264
                 ++
  KKY19485.1 409 WI 410
                 *7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.3   0.0   8.5e-41     3e-37       2     255 ..     123     404 ..     122     407 .. 0.89

  Alignments for each domain:
  == domain 1  score: 128.3 bits;  conditional E-value: 8.5e-41
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST.TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlke.eateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkeke 98 
                  +l +k+G Gaf++V++++ +   + k  +VavK++++ e+++++++++l+e++im++l+hpnivkl+ +  +++ ++iv+e+++gG+L + + +   +
   KKY19485.1 123 TLIEKMGDGAFSNVYKARDN---TGKYGEVAVKVVRKfEMNSNQRANILKEVQIMRQLDHPNIVKLVDFSESRQYYYIVLELCPGGELFHQIVRL--T 215
                  6789*************998...89999*******762666677999*****************************************9999997..7 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTT.EEEST-SGGGEEEEE.................................TTEEEE-STTTHEETTTSSEEEET CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskk.lvHrdlaarNvLlse.................................nkvvkisDfGLardiekddeyvkk 162
                   ++ +   ++++qvA+++eyL+++k +vHrd+   N L                                      ++ki+DfGL++ +      +++
   KKY19485.1 216 YFSEDLSRHVITQVAQALEYLHEEKgVVHRDIKPENLLFYPvpfvptknpkprgpedeekadegefipgvgsggIGQIKIADFGLSKVVW----DTQT 309
                  8888888999***********976559************99999***************************99888*************3....3344 PP

                  TSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEE.S-BB..TTSBHHHHHHHHHHT-SSGGGS--HHHH CS
  Pkinase_Tyr 163 eeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklkegkr.lekp..ekcpeelyelmkkcweedpeeRptfsel 255
                   +    v ++apE++k+++++++ D+W+ G +l+ +++ g  p+ + + + ++ek+ +g+     p  ++++++ ++l+++ ++ +p++R t++e 
   KKY19485.1 310 MTPCGTVGYTAPEIVKDERYSKSVDMWALGCVLYTLLC-GFPPFYDESIQVLTEKVARGQYtFLSPwwDDISKSAQDLVSHLLTVNPDKRYTIREF 404
                  45556899*****************************9.*******99999999996665424444338899999999999999999999998876 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0013       4.7      12     106 ..     135     237 ..     125     238 .. 0.70
   2 !   10.6   0.0   0.00011      0.38     151     180 ..     224     254 ..     209     262 .. 0.71
   3 ?   -3.1   0.0       1.7   6.1e+03     203     229 ..     481     505 ..     480     514 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0013
                 EEEEEEETT-...-EEEEEE-TT....S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS.....HHHHHHHHHHHHHH CS
         APH  12 rtylvttpag...ryvlrrnppa....raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr.....klsaaqlpelleal 98 
                  +y+  + +g   +++++++++        + i +ev+++r+L   ++   +++++ ++++ ++++ +l ++  g+ +++     + s++ +++++ ++
  KKY19485.1 135 NVYKARDNTGkygEVAVKVVRKFemnsNQRANILKEVQIMRQLDHPNI--VKLVDFSESRQYYYIVLELCPG--GELFHQivrltYFSEDLSRHVITQV 229
                 366666555334499999977776556678888899999999887766..5****87666666666666666..5555558889988899999999999 PP

                 HHHHCCHH CS
         APH  99 geflaalh 106
                 +++l  lh
  KKY19485.1 230 AQALEYLH 237
                 99988887 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00011
                 HHHHHHHHH--S.SS-EEEE-SS-SGGGEEE CS
         APH 151 qvlaalaallpg.elptvllHgDlhpgNllv 180
                  v+ ++a+ l   +++++++H+D++p Nll+
  KKY19485.1 224 HVITQVAQALEYlHEEKGVVHRDIKPENLLF 254
                 333333333333448***************8 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.7
                 HHHHCCHHHCSCHCCCHCHHHHHHHHC CS
         APH 203 yDlavllrswtseldpeflaallraye 229
                 +D+++++ + ++e+ +  ++++ ++y 
  KKY19485.1 481 FDVGYAV-H-RQEEEAKRRKNFKQGYR 505
                 8999999.7.79999999999999997 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.12   4.3e+02      20      64 ..     128     173 ..     120     199 .. 0.65
   2 !    7.1   0.0   0.00085         3     142     178 ..     219     255 ..     205     259 .. 0.83
   3 !    6.7   0.0    0.0011         4     225     251 ..     327     353 ..     301     398 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.12
  Kinase-like  20 lkkgdrsvvfevkdqetgep..lavkvfllpseaskkdlerlkeqel 64 
                  +++g +s v++++d+  g++  +avkv    + +s++  + lke ++
   KKY19485.1 128 MGDGAFSNVYKARDNT-GKYgeVAVKVVRKFEMNSNQRANILKEVQI 173
                  5677788888888876.554114455555555666666666666554 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00085
  Kinase-like 142 etiarlllTlqlirlaanLqa.kglvhgkftvdnllld 178
                  e+++r+++T q+ +   +L++ kg+vh +++++nll+ 
   KKY19485.1 219 EDLSRHVIT-QVAQALEYLHEeKGVVHRDIKPENLLFY 255
                  7899****7.5888888998537************985 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0011
  Kinase-like 225 tkmthkldaWqlGlviyriwclklPlt 251
                   +++ ++d W+lG v y + c   P+ 
   KKY19485.1 327 ERYSKSVDMWALGCVLYTLLCGFPPFY 353
                  568999***************988875 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.6e-05     0.057     311     342 ..     225     272 ..     218     346 .. 0.74
   2 ?   -4.3   0.4       1.6   5.7e+03     221     247 ..     556     582 ..     530     608 .. 0.46

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.6e-05
  Pkinase_fungal 311 alrDaIkghrsLflkagiLHrDiSenNilit................d 342
                     ++ ++ ++++ L++++g++HrDi  +N+l++                d
      KKY19485.1 225 VITQVAQALEYLHEEKGVVHRDIKPENLLFYpvpfvptknpkprgpeD 272
                     567788999********************9988888777777777652 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 1.6
  Pkinase_fungal 221 iRkgldvtkaekfrskrkvvsssssqe 247
                     +R++   t++++  ++r++++s+++q+
      KKY19485.1 556 MRQTNLGTQPSAAAQARSAAASKPRQQ 582
                     222222222223333333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.49
# Mc/sec: 3999.85
//
Query:       KKY19486.1  [L=584]
Description: putative c6 zinc finger domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-07   30.9   1.1    6.9e-07   28.6   0.1    2.1  2  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.1   3.8e-11   6.9e-07      16     159 ..     106     243 ..      92     259 .. 0.82
   2 ?    0.6   0.1     0.013   2.4e+02      30      80 ..     386     441 ..     368     467 .. 0.63

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-11
  Fungal_trans  16 hkpsflpkt..ssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektssdr 110
                   h++ f ++   ++ ++++  + sp+l++ai+++Ga+  +++ +  +  ++  +       l+ ++l+    s +++ + ++++ lll l+ + ++++
    KKY19486.1 106 HYERFVSDIfeRNMSPPQYFEESPFLFWAIVCTGARKHPKDPSLLERASKILM------GLALKSLY----SMEDP-IPSIKAVLLLLLWPLPMTTT 191
                   445555555666669999999***************99999999866666544......45888888....66666.88*****************9 PP

  Fungal_trans 111 alher..hhgvavrlarslgLhrnpsyvgkks.lwklweeeaesrrRlwwaa 159
                   ++     ++g a++la + gLh        ++   + +e e+ +r Rlw  +
    KKY19486.1 192 YKDPSfaFSGAAMQLAIQGGLHVAGHAQDYSQtKHRFSESEQNARSRLWIQC 243
                   9999999***************8887777666677788888889*****877 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.013
  Fungal_trans  30 sksayaspllllailalGalfsesetkesnssltses......qefiafplraeili 80 
                    + a  sp++++ ++ l+a+++ ++tk   +s+ +        ++ i ++ r ++l+
    KKY19486.1 386 QDLALFSPIFIARMITLAAFSVLKITKGPLKSHIDLHtaeeaiYKAI-TFSRRRSLQ 441
                   55566678899999999999999999998777777555533322222.222333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 3587.98
//
Query:       KKY19487.1  [L=547]
Description: putative cytochrome p450 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-64  218.9   0.0    1.5e-64  218.5   0.0    1.0  1  p450      Cytochrome P450
  ------ inclusion threshold ------
      0.079   12.7   1.3       0.23   11.2   0.9    2.0  2  TetR      Bacterial transcriptional repressor


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.5   0.0   1.7e-68   1.5e-64      39     439 ..     100     512 ..      74     527 .. 0.87

  Alignments for each domain:
  == domain 1  score: 218.5 bits;  conditional E-value: 1.7e-68
                 EEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCS CS
        p450  39 lklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgklsleelveeeaedlveklrkkagess 137
                 + l + +  + ++pea k  +++k+ +     +++  a+      g+g+++ +gek+k++R++l p++ +  +++l +l+   +++lv+ +rk+++es+
  KKY19487.1 100 FGLLNSECLIATSPEALKDMFVAKQYDWI---KPRKRAQVLASIIGNGLVTIEGEKHKRQRKLLQPSFNFRHIQELYSLFWNTSKELVQCIRKTVSESG 195
                 5667778889999*********9974443...3334444444789************************99888************************* PP

                 ...EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCC.CCCH..HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        p450 138 ...elditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqll.llfp..llkylptkllrklkeavkklkdlldklieerret 230
                    ++di+ ++++a+ld+igs  Fg +f++l+ +++ +lv   + +++  + ++v++l +l p  +l+ lp+k l+++     +++ +++k+i++r+e+
  KKY19487.1 196 sdrVIDIQSWFARATLDIIGSAGFGLHFNSLKYPHS-DLVSRYRIMFESRAVPVVNVLaKLVPtrVLLSLPSKRLQEISTSKTAISTHMQKVIRQRKEQ 293
                 ********************************9975.7887777777765556555442333346999******************************* PP

                 HCHC..SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTT....T-HHHHCCT-HH CS
        p450 231 ldsa..kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkr....eptyddlqklpy 323
                 l ++  k  ++d l++ ++a+        ++++el+   +++l+aG+dTts +l+ +L+eL +n+e+q++lr Ei+  +++ +     +  +d+ ++p 
  KKY19487.1 294 LAESdqKLAEKDILSIAMQAE-------AYTEQELTDHSMTFLAAGQDTTSFALTCTLLELSRNQELQSRLRREIRANIPSPDsedsMINSNDIDRVPW 385
                 **9966556777777777774.......8**************************************************554447889999******** PP

                 HHHHHHHHHHHSCSSTTEEEEESSS.CEEETTEEE-TT-EEEEEHHHHHT-TTTSS....STTS--GGGGB-TTS.......CTESSCTT--TTEEGGG CS
        p450 324 ldavikEtLRlhpvvplllpRevtk.dvvirgylipkGtevivnlyalhrdpevfp....nPeeFdpeRFldekg.......nskrksfaflPFGaGpR 410
                 l+av++EtLR++p v+ ++ R+++k d+v+ g ++pk+t+v +++ a++r +  ++    ++ e +peR+ ++ +           +  +f+ F  G R
  KKY19487.1 386 LTAVCNETLRFYPSVD-QTGRVTLKsDTVLVGEKVPKDTIVETSIVAINRYQPWWSgtpyDASEWHPERWFEDLEtgklsasGGATDAWSFMTFIRGNR 483
                 ****************.*****9999*****************************6666689********98877789998744478899********* PP

                 S-TTHHHHHHHHHHHHHHHHHHEEEEEST CS
        p450 411 nCiGerlArmelklflatlLqnFevelqp 439
                 +CiGe++Ar e+ ++la l+ +Fe+ +  
  KKY19487.1 484 SCIGEKFARSEMAVILAALIGKFEFRFEG 512
                 *************************9844 PP

>> TetR  Bacterial transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.73   6.5e+03      92     104 ..       4      16 ..       2      23 .. 0.83
   2 ?   11.2   0.9   2.6e-05      0.23      43      85 ..     268     312 ..     266     327 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.73
                 HHHHHHHHHHCHH CS
        TetR  92 LadniwlvatyWl 104
                  a+n+ +vat+ +
  KKY19487.1   4 TATNMAIVATFLI 16 
                 689******9965 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 2.6e-05
                 SHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSB-..-- CS
        TetR  43 DlaellsrnpeLakryrqlleelqaqlrellqelveagllq..ad 85 
                  l e+ ++  ++ ++++++++++++ql+e  q+l+e+++l+  ++
  KKY19487.1 268 RLQEISTSKTAISTHMQKVIRQRKEQLAESDQKLAEKDILSiaMQ 312
                 6899************************************95433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.48s 00:00:01.17 Elapsed: 00:00:00.70
# Mc/sec: 2361.33
//
Query:       KKY19488.1  [L=394]
Description: putative g1 s-specific [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-37  127.0   0.1    8.5e-37  125.7   0.0    1.7  2  Cyclin_N  Cyclin, N-terminal domain
      4e-10   39.8   0.6    1.4e-09   38.1   0.6    2.0  1  Cyclin_C  Cyclin, C-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.7   0.0   9.5e-41   8.5e-37       1     126 [.      53     180 ..      53     181 .. 0.97
   2 ?   -2.5   0.0      0.44     4e+03      50      84 ..     201     235 ..     188     251 .. 0.67

  Alignments for each domain:
  == domain 1  score: 125.7 bits;  conditional E-value: 9.5e-41
                 HHHHHHHHHHCHTS-STTCTTCTSSS-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHH..HSSS---HHH CS
    Cyclin_N   1 dilknlieqelkflpkpdyldqqpelnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKv..eeisppkled 97 
                 dil+++ + ++ ++p+ + +d qpe+++ mR+ l+d+++e +++f+l petlflavn+ldR++sk++v k++ qlv +++Ll+A+K+  ++ ++p++++
  KKY19488.1  53 DILEHMMQMDADTIPDVESIDIQPEIKWFMRPYLLDFIIEAHSVFQLLPETLFLAVNLLDRYCSKREVFKRHYQLVSCAALLIASKYgdKKERVPTIKE 151
                 7999***********************************************************************************775556****** PP

                 HHHHTTTSS-HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N  98 lvyitdeafteeeilemErliLetLnfdl 126
                 l  ++++ ++ +++l+mE +iL+tL + +
  KKY19488.1 152 LRSMCGSLYDDDMFLQMEWHILSTLGWTI 180
                 ***************************97 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.44
                 THHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHH CS
    Cyclin_N  50 etlflavnyldRflskksvpkdklqlvgatcLllA 84 
                 e  +la+ + +  l ++++  +   ++++++L lA
  KKY19488.1 201 EAEHLALYIAEIALFHREFVSKLSSTIALSSLALA 235
                 44455555555555555556666666777777766 PP

>> Cyclin_C  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.6   1.6e-13   1.4e-09       1     114 [.     183     285 ..     183     290 .. 0.81

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 1.6e-13
                 --HHHHHHHHHCCSSHT.-HCCHHCHHCHHHHHHCSCCHCCS-HHHHHHHHHHHCCHHHHS--S-HHHHHHC---HHHHHHHHHHHHHHHHHHHGSS-- CS
    Cyclin_C   1 ptplsFlrrflkaadasedselrtlakylleltlldydflsyppSliAaaalllarstlnspewtetlehytgyskedlkpcvelilellssapssklq 99 
                 pt+ sFlr+ +k + +  d+e ++la y++e++l + +f+s + S+iA ++l+lar++l++p+  ++ e+ +++ +  + ++ +++++ +         
  KKY19488.1 183 PTVDSFLRLAVKDSVY--DPEAEHLALYIAEIALFHREFVSKLSSTIALSSLALARHVLGRPQ-ARQGEYASHFCQATVIELSQKLHQPS--------V 270
                 8999*********666..99***************************************8888.45777778888888888888777766........2 PP

                 HHCCCCTCGGGCCCG CS
    Cyclin_C 100 avrrkyssskfhkvs 114
                    rky+s +f +vs
  KKY19488.1 271 ILSRKYASGRFASVS 285
                 345566666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.78s 00:00:01.40 Elapsed: 00:00:00.67
# Mc/sec: 1780.57
//
Query:       KKY19489.1  [L=238]
Description: hypothetical protein UCRPC4_g04472 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.8    7.3   7.3        3.4    7.0   7.3    1.2  1  SDA1      SDA1


Domain annotation for each model (and alignments):
>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.3   0.00019       3.4      89     143 ..      92     164 ..      49     190 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00019
        SDA1  89 e...............eeeedsddeddeedwevesdddseedseggwidvesdee.......eieesdesedeeeee 143
                 +                +e d+d +d++e++e+++d d  ++++ g i  +s ++       ++e++++se+ee  +
  KKY19489.1  92 DrkrspppatlppesiGDEYDDDGADSNEEDELAEDLD--SEEDLGLIRFQSASAtqprtlsDVEDESSSEEEE--D 164
                 13445777777777652333323344444555555444..4666799***999997766644333333222222..2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.42s 00:00:00.98 Elapsed: 00:00:00.57
# Mc/sec: 1247.96
//
Query:       KKY19490.1  [L=952]
Description: putative small nucleolar ribonucleoprotein complex [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-16   59.9   0.8      0.002   18.4   0.0    7.4  7  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    1.1e-11   45.1  11.8       0.87   10.6   0.1    8.9 10  WD40         WD domain, G-beta repeat
    4.4e-05   22.6   0.1      0.022   13.7   0.0    3.6  4  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
      0.001   18.4   6.6       0.57    9.4   0.0    4.0  5  Lactonase    Lactonase, 7-bladed beta-propeller
     0.0023   17.6   0.0      0.015   14.9   0.0    2.3  2  PQQ_2        PQQ-like domain
  ------ inclusion threshold ------
      0.035   14.0   0.0       0.67    9.8   0.0    3.1  4  eIF2A        Eukaryotic translation initiation factor eIF2A
      0.057   12.7   0.0        4.4    6.5   0.0    2.6  2  RAB3GAP2_N   Rab3 GTPase-activating protein regulatory subuni
       0.15   11.7   0.5       0.57    9.9   0.2    2.1  3  Hira         TUP1-like enhancer of split


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.099   2.2e+02      11      49 ..      38      78 ..      33     113 .. 0.66
   2 !    6.5   0.0    0.0046        10      46      73 ..     147     174 ..     112     178 .. 0.79
   3 !   18.4   0.0   8.9e-07     0.002      27      86 ..     176     242 ..     172     246 .. 0.81
   4 ?    4.6   0.0     0.018        41      51      82 ..     246     277 ..     236     286 .. 0.86
   5 ?    3.5   0.1     0.038        86      38      80 ..     431     472 ..     425     477 .. 0.84
   6 !   11.6   0.0   0.00012      0.27      35      72 ..     480     517 ..     470     532 .. 0.80
   7 ?    3.6   0.0     0.037        82      35      64 ..     550     579 ..     528     597 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.099
  ANAPC4_WD40 11 Alatedgellv...fRlng.qrvwtleedkedsevrsLaWkpd 49
                 Al+ ++g++++   +R n+ q++      ++d+++++LaW +d
   KKY19490.1 38 ALGRANGDIEIwnpNRGNWfQEIILR--GGNDRSIEGLAWTED 78
                 44444444433112344444333333..577777777777655 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0046
  ANAPC4_WD40  46 WkpdgklLavaysdgevrlldaesgkvv 73 
                   +p+ + +a +++dg++ l++ e+g++ 
   KKY19490.1 147 NHPQSQYIAAGCADGNILLFSTEDGDLR 174
                  4788999*****************9875 PP

  == domain 3  score: 18.4 bits;  conditional E-value: 8.9e-07
  ANAPC4_WD40  27 qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek.........avtc 86 
                   +v ++  ++++ +v s+aWk+  ++ + +ysdg++rl+d+   k++++++ ++++         avtc
   KKY19490.1 176 SKVIGA-PPTKKPRVLSIAWKNR-NVVVAGYSDGTLRLYDIRARKLLRNMTLGKSTdgsneilvwAVTC 242
                  566777.6889999******976.67889*********************9998876756555555555 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.018
  ANAPC4_WD40  51 klLavaysdgevrlldaesgkvvhslsvksek 82 
                  + +  + s ge+++ d+++  +v+ +++++ +
   KKY19490.1 246 ETIISGDSAGEIKIWDSHNYSLVQRIQAHQAD 277
                  5677899*********************9985 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.038
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  d++++s   + dg+ Lav++s  +v+l++ ++++ +++l vk 
   KKY19490.1 431 DENITSATISTDGQALAVSTS-ASVKLFQLKHKQNLQKLIVKV 472
                  788999999*********997.579999999999988887765 PP

  == domain 6  score: 11.6 bits;  conditional E-value: 0.00012
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkv 72 
                    e +  r ++++pdg+ La + sd++++ll+++  + 
   KKY19490.1 480 RVEAGGARLVQFSPDGHWLASVRSDNSISLLKIHRSTY 517
                  55666778899********************9987654 PP

  == domain 7  score: 3.6 bits;  conditional E-value: 0.037
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrl 64 
                   k ++++ ++a+++d ++Lav+   g +  
   KKY19490.1 550 GKYEKTILNIAFSHDSRILAVGDISGCIDC 579
                  56678999**************99998765 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.7     6e+03      28      38 .]      40      50 ..      16      50 .. 0.78
   2 !   10.6   0.1   0.00039      0.87       4      37 ..     112     166 ..     109     167 .. 0.83
   3 !    7.8   0.0    0.0028       6.3      13      38 .]     189     213 ..     178     213 .. 0.73
   4 ?    6.0   0.1     0.011        24      12      38 .]     234     261 ..     221     261 .. 0.73
   5 !    6.1   0.0    0.0097        22       5      32 ..     269     297 ..     265     299 .. 0.86
   6 ?   -1.1   0.0       1.9   4.4e+03       7      31 ..     324     349 ..     319     351 .. 0.64
   7 ?   -2.2   0.1       4.1   9.1e+03      29      37 ..     388     397 ..     376     398 .. 0.69
   8 ?   -1.7   0.0       2.8   6.3e+03       9      36 ..     430     456 ..     425     458 .. 0.73
   9 !    9.8   0.0   0.00068       1.5      16      35 ..     489     508 ..     462     509 .. 0.85
  10 ?    2.1   0.2      0.18   4.1e+02      12      29 ..     555     572 ..     538     581 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.7
                EETTSEEEEEE CS
        WD40 28 GsdDgtvriWd 38
                G  +g + iW+
  KKY19490.1 40 GRANGDIEIWN 50
                756999****8 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00039
                 EEEEESS.SSEEEEE....................EETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGH.ssvtsla....................fspdgawlasGsdDgtvriW 37 
                 lr+  G  + ++++a                    ++p ++++a+G+ Dg++ ++
  KKY19490.1 112 LRHANGNyGEIWCFAaqpkykrkdntssssttihdNHPQSQYIAAGCADGNILLF 166
                 45545555559999999999999999999999999***********99****886 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0028
                 EEEEEEETTSSE.....EEEEETTSEEEEEE CS
        WD40  13 vtslafspdgaw.....lasGsdDgtvriWd 38 
                 v s+      aw     +++G  Dgt+r++d
  KKY19490.1 189 VLSI------AWknrnvVVAGYSDGTLRLYD 213
                 6677......4444444668*55******98 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.011
                 S..EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 s..vtslafspdgawlasGsdDgtvriWd 38 
                    v+++   pd + + sG+  g ++iWd
  KKY19490.1 234 EilVWAVTCLPDETII-SGDSAGEIKIWD 261
                 3555666666888886.8*66*******9 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.0097
                 EEEESS.SSEEEEEEETTSSEEEEEETTS CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDg 32 
                 + + +H  +v ++  s dg +l+sG+ D+
  KKY19490.1 269 QRIQAHqADVLDIVASADGEMLMSGGADR 297
                 55679*888****************9997 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 1.9
                 EESSSSEEEEEEETTSSE..EEEEETT CS
        WD40   7 ltGHssvtslafspdgaw..lasGsdD 31 
                 +  H +v  +a+  + ++  l+sG+ D
  KKY19490.1 324 FHEH-DVKTIATFESTDLsvLVSGGLD 349
                 4556.6777775555555558899877 PP

  == domain 7  score: -2.2 bits;  conditional E-value: 4.1
                 E.TTSEEEEE CS
        WD40  29 s.dDgtvriW 37 
                 s +D+ v iW
  KKY19490.1 388 SwWDREVSIW 397
                 5369****** PP

  == domain 8  score: -1.7 bits;  conditional E-value: 2.8
                 SSSSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40   9 GHssvtslafspdgawlasGsdDgtvri 36 
                 G  ++ts   s dg+ la ++   +v++
  KKY19490.1 430 GDENITSATISTDGQALAVST-SASVKL 456
                 444599999999999998665.666665 PP

  == domain 9  score: 9.8 bits;  conditional E-value: 0.00068
                 EEEETTSSEEEEE.ETTSEEE CS
        WD40  16 lafspdgawlasG.sdDgtvr 35 
                 ++fspdg+wlas  s D+++ 
  KKY19490.1 489 VQFSPDGHWLASVrS-DNSIS 508
                 45********98866.99996 PP

  == domain 10  score: 2.1 bits;  conditional E-value: 0.18
                 SEEEEEEETTSSEEEEEE CS
        WD40  12 svtslafspdgawlasGs 29 
                  +  +afs+d++ la G+
  KKY19490.1 555 TILNIAFSHDSRILAVGD 572
                 38899*********9875 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.017        38     165     228 ..     129     191 ..      93     199 .. 0.66
   2 ?    0.1   0.0      0.13     3e+02     260     286 ..     248     274 ..     237     292 .. 0.84
   3 !   13.7   0.0   9.8e-06     0.022     145     221 ..     384     464 ..     372     473 .. 0.69
   4 ?   -2.0   0.0      0.59   1.3e+03     194     220 ..     490     516 ..     484     522 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.017
    Ge1_WD40 165 skygsgelsveeieegllkieehsliveaafspdGtalatasedGevkffqvyle.deeeprCLh 228
                  ky++++ +++  ++++++ ++      aa  +dG  l  ++edG ++f +v     +++pr L 
  KKY19490.1 129 PKYKRKDNTSS--SSTTIHDNHPQSQYIAAGCADGNILLFSTEDGDLRFSKVIGApPTKKPRVLS 191
                 44544443322..33334433334556678899****************9998764567777774 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.13
    Ge1_WD40 260 itgadnnselklWscelWtClqtikfa 286
                 i + d   e+k+W ++ ++ +q i+ +
  KKY19490.1 248 IISGDSAGEIKIWDSHNYSLVQRIQAH 274
                 66778899***********99999864 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 9.8e-06
    Ge1_WD40 145 kllvltrgdkaeiwsvdmiaskygs...gelsveeiee..gllkieehsliveaafspdGtalatasedGevkffqvylede 221
                 +llv     ++ iw+++  +s  ++   + +   e+++  + + ++ + +i++a++s+dG ala+++    vk+fq+  +++
  KKY19490.1 384 RLLVSWWDREVSIWQIHNKESTSDQsdsMTTPGVEKYKllSKILLTGDENITSATISTDGQALAVST-SASVKLFQLKHKQN 464
                 66666666778899988766655441112222333333345666778889**************976.578*****977655 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 0.59
    Ge1_WD40 194 afspdGtalatasedGevkffqvyled 220
                  fspdG  la   +d  + + +++ + 
  KKY19490.1 490 QFSPDGHWLASVRSDNSISLLKIHRST 516
                 69*************999988887665 PP

>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00066       1.5      60     123 ..     160     222 ..     137     234 .. 0.74
   2 ?    3.7   0.0     0.014        31      76     159 ..     421     500 ..     400     502 .. 0.78
   3 !    9.4   0.0   0.00025      0.57     214     288 ..     453     527 ..     446     533 .. 0.68
   4 ?    3.1   0.2      0.02        46     108     156 ..     505     552 ..     503     553 .. 0.81
   5 ?   -0.5   0.8      0.25   5.6e+02     124     160 ..     652     687 ..     645     702 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00066
                 TTEEEEEEEETTTTEEEEEEEEE.SSS-EEEEEE-TTSSEEEEEETTTTEEEEEEB.TTSEBES CS
   Lactonase  60 eggvsafaidkdsgeltllnkvssegaspchlsvdedgkllavAnYsggsvsvfpldadgslke 123
                 +g++  f+ ++ + +++++  ++   ++p +ls+  +++ ++vA Ys g+++ ++++a + l++
  KKY19490.1 160 DGNILLFSTEDGDLRFSKVIGAP-PTKKPRVLSIAWKNRNVVVAGYSDGTLRLYDIRARKLLRN 222
                 56666666665443333333333.57899999************************99765554 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.014
                 EEEEEEE..SSS-EEEEEE-TTSSEEEEEETTTTEEEEEEB.TTSEBESECEEEE.....SSTTT-SSTTEEEEEE-TTSSEEEE CS
   Lactonase  76 tllnkvss.egaspchlsvdedgkllavAnYsggsvsvfpldadgslkeasqvlkhegsgpnperqesphaHsvvldpdgkfllv 159
                 +ll+k    ++++ +  +++ dg+ lav+  +++sv+ f+l+ +++l++    +    s   per e+  a  v+++pdg+ l++
  KKY19490.1 421 KLLSKILLtGDENITSATISTDGQALAVS--TSASVKLFQLKHKQNLQKLIVKV---KSVELPERVEAGGARLVQFSPDGHWLAS 500
                 55555544266677788899999998888..5899******9999999996655...3566778999999999999999999876 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00025
                 EEEEEEEE-TTTEEEEEEEEE..SS-TSS-S---EEEEEE-TTSSEEEEEETSSTEEEEEEE-TTT--EEEEEEEE- CS
   Lactonase 214 tvsvfsydeatgaleelqtvs..tlpegftgknsaaeIrlspdgkflyvSnRgadsiavfavdeadgtltlveevst 288
                 +v+ f++++++   + + +v+   lpe++++  +a  ++ spdg++  +S R+++si+++++++++ t + + + +t
  KKY19490.1 453 SVKLFQLKHKQNLQKLIVKVKsvELPERVEAG-GARLVQFSPDGHW-LASVRSDNSISLLKIHRSTYTTERISALPT 527
                 56666655333322333333300345555555.6667899*****9.69*************999888877776665 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.02
                 TEEEEEEB.TTSEBESECEEEE.....SSTTT-SSTTEEEEEE-TTSSE CS
   Lactonase 108 gsvsvfpldadgslkeasqvlkhegsgpnperqesphaHsvvldpdgkf 156
                 +s+s ++++ +   +e+ + l  + ++ ++ r +  h+H    dp+gk+
  KKY19490.1 505 NSISLLKIHRSTYTTERISALP-TITRLRRRRRKLDHPHTSSSDPTGKY 552
                 6788888888888888888775.46677788999*************97 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.25
                 ECEEEE.....SSTTT-SSTTEEEEEE-TTSSEEEEE CS
   Lactonase 124 asqvlkhegsgpnperqesphaHsvvldpdgkfllvp 160
                 +sq l ++  g +  rq +ph+Hs ++  +++ l+++
  KKY19490.1 652 ESQSLPNDDIGLHATRQ-TPHPHSHTVPVQEDRLVAV 687
                 45667777779999888.9999998887777777765 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   6.5e-06     0.015      95     227 ..     108     261 ..      67     266 .. 0.65
   2 ?   -1.2   0.0      0.54   1.2e+03      73     101 ..     678     707 ..     663     730 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.5e-06
       PQQ_2  95 dGkr..........lWstqqrse.epaelrssaspava.....gdtvvvgessgklvaldpkdGkvlWerelaaprgtselsrvgdisgrpvva....e 173
                  G++           W ++ + + +  +  ss+s +++     ++++++g+++g++  ++ +dG+++ ++ ++ap++            +p+v     +
  KKY19490.1 108 RGTTlrhangnygeIWCFAAQPKyKRKDNTSSSSTTIHdnhpqSQYIAAGCADGNILLFSTEDGDLRFSKVIGAPPT-----------KKPRVLsiawK 195
                 55555555555555666555554333334567777777799999****************************99882...........33333333563 PP

       PQQ_2 174 g.tVyassgqgrllal.dlatgr..rlwskeiss.........inglpildgdllyvvsa.geliald 227
                 + +V +++++ ++l l d++  +  r+   +++          + +  +l++++++ +++ ge+  +d
  KKY19490.1 196 NrNVVVAGYSDGTLRLyDIRARKllRN--MTLGKstdgsneilVWAVTCLPDETIISGDSaGEIKIWD 261
                 348888888888888888888774422..112222234455665555566666666666447776666 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.54
       PQQ_2  73 lvaegrvvvvasdgqlialdaedGkr.lWs 101
                  v e+r+v+v++  ++++++   G++  Ws
  KKY19490.1 678 PVQEDRLVAVTAQHHVVEFEGMKGRLsDWS 707
                 344555555555555555554444432454 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.6   5.9e+03     120     132 ..      39      51 ..      38      57 .. 0.82
   2 ?   -2.4   0.0       1.7   3.8e+03     125     159 ..     120     155 ..     115     159 .. 0.80
   3 ?    9.8   0.0    0.0003      0.67      62     151 ..     189     281 ..     175     297 .. 0.69
   4 ?   -1.2   0.0      0.68   1.5e+03     130     159 ..     470     499 ..     457     508 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.6
                 TTSSS-EEEEEET CS
       eIF2A 120 fgnlaGeleiwdv 132
                 +g  +G++eiw+ 
  KKY19490.1  39 LGRANGDIEIWNP 51 
                 67889******96 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.7
                 -EEEEEETT.TTEEEEEEE-TT--EEEE-TTSSEEE CS
       eIF2A 125 Geleiwdvk.kkkkiakaeaanatlvewspdgryvl 159
                 Ge+  +  + k+k   ++ ++ +t  + +p+++y++
  KKY19490.1 120 GEIWCFAAQpKYKRKDNTSSSSTTIHDNHPQSQYIA 155
                 777777777788888889999999999999999986 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.0003
                 EEEEEE-TTSS-EEEEESSSSCEEEEEECS.....CEEEEEEEEES--EE.EE-TT...SSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--EEEE CS
       eIF2A  62 ihdvaWspkskefaviyGkmpakvslfdlk.....vkviskleeqkrNti.ffspk...gklvllaGfgnlaGeleiwdvkkkkkiakaeaanatlvew 151
                 +  +aW++   + +v+ G+++ +  l+d +      +++   +++  N i ++  +   ++ ++    g+ aGe++iwd ++++ +++++a +a +++ 
  KKY19490.1 189 VLSIAWKN---RNVVVAGYSDGTLRLYDIRarkllRNMTLGKSTDGSNEIlVWAVTclpDETIIS---GDSAGEIKIWDSHNYSLVQRIQAHQADVLDI 281
                 66677765...4589*************9854533222222333445654156543222455554...6899******************999988774 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.68
                 EETTTTEEEEEEE-TT--EEEE-TTSSEEE CS
       eIF2A 130 wdvkkkkkiakaeaanatlvewspdgryvl 159
                 ++vk+++  +++ea  a lv++spdg++++
  KKY19490.1 470 VKVKSVELPERVEAGGARLVQFSPDGHWLA 499
                 6677778888889999999*******9986 PP

>> RAB3GAP2_N  Rab3 GTPase-activating protein regulatory subunit N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.019        43      70     102 ..     144     178 ..     115     192 .. 0.78
   2 ?    6.5   0.0     0.002       4.4      76     102 ..     197     223 ..     188     228 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.019
  RAB3GAP2_N  70 sqg.spdwtviavGlssGylrfyt.engelLlsql 102
                  ++ +p++++ia+G  +G +++++ e+g+l +s++
  KKY19490.1 144 IHDnHPQSQYIAAGCADGNILLFStEDGDLRFSKV 178
                 3444999***********99988527787766665 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.002
  RAB3GAP2_N  76 wtviavGlssGylrfytengelLlsql 102
                  +v+++G+s+G lr+y+ +  +Ll ++
  KKY19490.1 197 RNVVVAGYSDGTLRLYDIRARKLLRNM 223
                 689*****************9999887 PP

>> Hira  TUP1-like enhancer of split
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.4   7.7e+03      22      44 ..     198     220 ..     191     225 .. 0.80
   2 ?    9.9   0.2   0.00026      0.57      10      95 ..     371     458 ..     368     463 .. 0.80
   3 ?   -3.9   0.0         4     9e+03      20      57 ..     494     531 ..     486     543 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.4
        Hira  22 syLlavtsvgllyvWnvkkkkvl 44 
                 ++++a  s+g+l  ++++ +k+l
  KKY19490.1 198 NVVVAGYSDGTLRLYDIRARKLL 220
                 566677799********999876 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00026
        Hira  10 lespasfLessgsyLlavtsvgllyvWnvkkkkvllppvs..lapllssssrssekeltrapavtsasltsnGvpivtlsngdgylyd 95 
                 l+ +++++++ +  Ll+   + ++++W++++k+++ ++++   +p +++ +  s+  lt ++++tsa++++ G+ + + ++ +  l++
  KKY19490.1 371 LPRQPQVCSAPTARLLVSWWDREVSIWQIHNKESTSDQSDsmTTPGVEKYKLLSKILLTGDENITSATISTDGQALAVSTSASVKLFQ 458
                 67789999999999999999*********9999998643311566677666666666******************9998888777765 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 4
        Hira  20 sgsyLlavtsvgllyvWnvkkkkvllppvslapllsss 57 
                  g++L+ v s+ +++  ++++ + + ++ s  p +++ 
  KKY19490.1 494 DGHWLASVRSDNSISLLKIHRSTYTTERISALPTITRL 531
                 56999999999999999999999888888888877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (952 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.48
# Mc/sec: 5967.09
//
Query:       KKY19491.1  [L=461]
Description: putative protein png1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-16   58.1   3.2    1.3e-15   57.3   3.2    1.3  1  Rad4            Rad4 transglutaminase-like domain
    1.5e-15   57.6   2.0    3.6e-15   56.4   2.0    1.6  1  Transglut_core  Transglutaminase-like superfamily


Domain annotation for each model (and alignments):
>> Rad4  Rad4 transglutaminase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   3.2   1.5e-19   1.3e-15      36     147 .]     288     398 ..     285     398 .. 0.87

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.5e-19
                 -SEEEEEEETTTTEEEEEESSSS-EESS--TTS--..TGGGS----EEEEE-TTS-EEE-HHHH-T.TCCCCHGGGSGGGSHHHHHHHHHHHHHH--S- CS
        Rad4  36 pvyWvEvfspekkkwisvdplvgstiekkeilepl..aekakqvlsYVvAfdsdgsakDVTrRYlsdysnsktkklrvekskeekkWfesvlrplekrn 132
                  ++W+Ev+s+++++w++vd++       +++++p+   e  k+ l+Y +Af s+ +a DVTrRY+++ + + + + r +  +e   W+ + +r ++++n
  KKY19491.1 288 DHVWTEVYSEHQRRWVHVDACE------EAWDNPRlyTEGWKKKLAYCIAF-SADGASDVTRRYVRNPVAHGLDRTRCP--EEVLLWIIQEIRRMRREN 377
                 579******************6......6999999999*************.8889**********99***********..666667766666666666 PP

                 --H........HHHHHHHHHH CS
        Rad4 133 kert......evdalEdaelr 147
                 ++++      + d++E++elr
  KKY19491.1 378 TSKEerrrlmREDDREEKELR 398
                 666688999999999999986 PP

>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   2.0     4e-19   3.6e-15       4     112 .]     211     307 ..     208     307 .. 0.88

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 4e-19
  Transglut_core   4 aeeltagakdpl.ekakaiyewvrknveysaprrtpgsrdaeavletgkGncedfaslfvallRalGipaRvvtgylsgeeekeqsvasedaHaw 97 
                     a+ +t+   d++   a++++ + +++ ++++++r p++ d++a+l+t++G+c ++a++f++l+Ra+G   R+v +  +              H+w
      KKY19491.1 211 AQGMTPPSPDEQaRGAARVELYKCSEPGCTTYERFPRYSDVWALLQTKRGRCGEWANCFSMLCRAVGARVRWVWNSED--------------HVW 291
                     55665555555558999999999999999999*****************************************88776..............*** PP

  Transglut_core  98 vevyl.egygWvplDp 112
                     +evy  ++++Wv++D+
      KKY19491.1 292 TEVYSeHQRRWVHVDA 307
                     *****77888*****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.35s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 2872.34
//
Query:       KKY19492.1  [L=842]
Description: hypothetical protein UCRPC4_g04475 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.038   13.0   1.0        3.4    6.6   0.1    2.3  2  PDH       Prephenate dehydrogenase


Domain annotation for each model (and alignments):
>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1   0.00019       3.4     208     250 ..     300     343 ..     293     348 .. 0.88
   2 ?    4.6   0.1   0.00075        13     200     258 .]     644     707 ..     620     707 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00019
                 GGS-HHHHHHHHH.HTHHHHHHHHHHHHHHHHHHHHHHHTT-HH CS
         PDH 208 aksnPelwadill.eNkeavlealdkfikelkklkelienedae 250
                 a+s+P+l + +++ +  +a +e+l +f+ ++++l+++i++e+ae
  KKY19492.1 300 AASDPALKQLMQVvASSRATQEQLRTFQGHIDRLNAIIARENAE 343
                 789******99862678899*******************99987 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.00075
                 CHHHHH.CGGGS-HHHHHHHHHHTH..HHHHHHHHHHHHHHHHHHHHHH..TT-HHHHHHHHHH CS
         PDH 200 gfrdvt.RiaksnPelwadilleNk..eavlealdkfikelkklkelie..nedaeeLvellke 258
                  ++ vt R++++nP + + i+ + k  +av++ +++ ik+ k++++ i   +  +ee+ve lke
  KKY19492.1 644 YYQPVTmRLIANNPLVLETIARAAKplKAVQDHMQNIIKTKKRARQEILalRLPREEFVEKLKE 707
                 4666667**************9988335889999999999999998887455566788888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (842 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1423  (0.0793686); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.01u 0.43s 00:00:01.44 Elapsed: 00:00:00.60
# Mc/sec: 4251.23
//
Query:       KKY19493.1  [L=417]
Description: hypothetical protein UCRPC4_g04476 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-58  196.4   0.0    6.3e-58  196.1   0.0    1.0  1  Memo      Memo-like protein


Domain annotation for each model (and alignments):
>> Memo  Memo-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.1   0.0   3.5e-62   6.3e-58      33     270 ..      98     413 ..      78     414 .. 0.93

  Alignments for each domain:
  == domain 1  score: 196.1 bits;  conditional E-value: 3.5e-62
        Memo  33 i..arviisPHagyvysgevaakayaelesskvervvilGpsHtilgskvsvlaaseleTPlG..dlkvDeelveeLvkkeei.........adldeta 118
                 +  ar++isPHagy ysg+ aa ay++l+ s+ +r++il psH+   s +++ + +++eTPl    l+ D+e +  L   + +         +  +  +
  KKY19493.1  98 QsgARAVISPHAGYAYSGPCAAWAYKSLDLSEAKRIFILHPSHHHSLSTIALPTLDAYETPLSpePLRLDKETIADLASLSTSipqssrilkFTTMSAS 196
                 1349**********************************************************84469**********9998888999999997777777 PP

        Memo 119 a.laEHSlEvqlpfLkellkek......kfkivPilvsaqseetakevgealakvikdesnlviiSsDlsHygrrFg...................... 188
                 + +aEHS+E+qlp +++ll++           vP++v++ s+ +++++g+ la +i d++n++++SsD++H+g rF+                      
  KKY19493.1 197 VdEAEHSMEMQLPYIHRLLQKLyqnpseYPPLVPMMVGSTSVAVEAAFGKLLAPYIADQENAFVLSSDFCHWGARFSytyyvpdspspatdpfilpprp 295
                 78*************99999877778844579******************************************************************* PP

        Memo 189 ..........................spqeiaesie..DrevikaleelneeelkeylektnnticGekpiavilkalkklga........kkakllkY 251
                                           s+ +i+esi   Dr ++ a+++ +++++++ l++t+nticG++pi v++  +++++          ++k+++Y
  KKY19493.1 296 sqaenllhldpsivhgrdlssrdktpSKPTIYESIAhvDRGCMCAIATGEHAAFAKILQETGNTICGRHPIGVFMAGVEEVRRasgkgedyGQFKFVRY 394
                 ************************999999*****99*****************************************99998899999999******* PP

        Memo 252 aqssdvtsdtdsvVsyasl 270
                 + ssd+   +ds+Vsy s+
  KKY19493.1 395 ERSSDAVHARDSSVSYVSG 413
                 ****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.53
# Mc/sec: 2380.88
//
Query:       KKY19494.1  [L=305]
Description: putative gnat family acetyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-10   41.5   0.0    2.2e-10   40.8   0.0    1.3  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    9.4e-06   25.5   0.0    1.7e-05   24.7   0.0    1.3  1  FR47             FR47-like protein
  ------ inclusion threshold ------
       0.01   15.7   0.0      0.017   15.0   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
      0.013   15.9   0.0       0.02   15.3   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   4.8e-14   2.2e-10      42     117 .]     188     266 ..     162     266 .. 0.90

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 4.8e-14
                     TEEEEEEEEEEEET.TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHHHHHH.TTE CS
  Acetyltransf_1  42 geliGfisllkipd.ekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaairlYek.lGF 117
                     g+++Gfisl +  + +  +v yi+++  sp  + +GlG +L++ +e  a +  g++k +l+v++ n++a+++Ye  lG+
      KKY19494.1 188 GQILGFISLMPTLEpPPHPVLYIYEIQLSPPLQSRGLGPRLVRLVEAMAVKIpGVEKCMLTVFKKNERARKMYEAkLGW 266
                     89*****99999999889**********************************9**999***************955996 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   3.7e-09   1.7e-05      23      81 ..     209     270 ..     204     273 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 3.7e-09
                 SEEEEEE-GGG-SSSHHHHHHHHHHHHHHH..S-S-EEEEEETT-HHHHHHHH.HHT-EEEE CS
        FR47  23 elgalqvlpehrrrGlgsrlvkalakeiae..rgktvllvvvasNtpsirlye.klGfekie 81 
                 +++ +q+ p  + rGlg rlv+ + +  ++    ++ +l v  +N++++++ye klG+e++e
  KKY19494.1 209 YIYEIQLSPPLQSRGLGPRLVRLVEAMAVKipGVEKCMLTVFKKNERARKMYEaKLGWEVDE 270
                 7999*************9887766555444423367899999**********9789999875 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   3.9e-06     0.017      40     109 ..     188     269 ..     186     279 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.9e-06
  Acetyltransf_10  40 gkivGviel.rdgs.......hisllfVdpeyrgqGigkaLleaveeeaekdgikl..eltvnasp.yavpfYe.klGFkav 109
                      g+i+G+i+l  + +       +i+ +  +p  +++G+g +L+  ve+ a k ++ +   ltv +++  a+++Ye klG+++ 
       KKY19494.1 188 GQILGFISLmPTLEppphpvlYIYEIQLSPPLQSRGLGPRLVRLVEAMAVKIPGVEkcMLTVFKKNeRARKMYEaKLGWEVD 269
                      6899999885555589999999999***********************7777665569********9******868999987 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   4.4e-06      0.02      12      74 ..     188     266 ..     172     268 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.4e-06
                     TEEEEEEEEEEES.......TCTEEEEE-GGGTTSSHHHHHHHH......TT...SEEEEEEEEE..THHHHHHHH.HHTTE CS
  Acetyltransf_7  12 gkivGfialslld.......aeitrlaVdpeyrgkGiGraLlea......ae...kgiileqlel..naekaikfY.eklGF 74 
                     g+i+Gfi+l+++         +i ++  +p  + +G+G +L+++      ++   +++ l+   +  ++e+a+k+Y +klG+
      KKY19494.1 188 GQILGFISLMPTLeppphpvLYIYEIQLSPPLQSRGLGPRLVRLveamavKIpgvEKCMLT---VfkKNERARKMYeAKLGW 266
                     8999*******9999998888888899***************9644444322332223222...33344499****446666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2132.68
//
Query:       KKY19495.1  [L=667]
Description: putative ribosome biogenesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   7.1e-123  409.5   0.3   7.1e-123  409.5   0.3    1.8  2  Pescadillo_N  Pescadillo N-terminus
    4.6e-06   27.0   0.0    3.4e-05   24.2   0.0    2.5  2  BRCT_2        BRCT domain, a BRCA1 C-terminus domain
     0.0059   16.9   0.0       0.45   10.9   0.0    3.2  2  BRCT          BRCA1 C Terminus (BRCT) domain


Domain annotation for each model (and alignments):
>> Pescadillo_N  Pescadillo N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  409.5   0.3  1.2e-126  7.1e-123       1     266 [.       6     272 ..       6     279 .. 0.98
   2 ?   -7.1   5.8         3   1.8e+04      82     102 ..     609     629 ..     597     661 .. 0.48

  Alignments for each domain:
  == domain 1  score: 409.5 bits;  conditional E-value: 1.2e-126
  Pescadillo_N   1 kkkkegeakkyitrkqalkkLqlslkdFRrLCilKGiyPrepkkkkkankgstaaktyYyakdikfLlhepilekfreikafakklkkalakkekek 97 
                   kk+++g+ak+yitr+qa++kLq+sl+dFRrLCi+KGiyPrep++kkka+k+s++++t+Yy+kdi++Llhep+l+kfre+ka++kk+ k l+++e+++
    KKY19495.1   6 KKGTAGQAKNYITRTQAVRKLQISLPDFRRLCIFKGIYPREPRNKKKASKSSSHSTTFYYTKDIQYLLHEPLLQKFREQKALSKKIAKSLGRNEVSD 102
                   799********************************************************************************************** PP

  Pescadillo_N  98 akrleknk.pkykldhiikeRYPtfidAlrdldDaLsliflfatlpktkkikekliekcerlaeefqayviksrslrkvFlSiKGiYyqaeikgqkv 193
                   a rlek+  pk++ldhi++eRYPtf+dAlrdldDaLsl+flfa+lp+t++++ k+i++c+rl++ef++y+i srs+rk+FlSiKGiYyqa+i+gq++
    KKY19495.1 103 AARLEKHAtPKITLDHIVRERYPTFVDALRDLDDALSLLFLFANLPSTSTVPPKIIARCQRLCHEFEHYLIVSRSMRKSFLSIKGIYYQATIQGQDI 199
                   ****99877**************************************************************************************** PP

  Pescadillo_N 194 tWlvPykfaqklekdvdfkvmltflefYetllkfvnfkLykslnlkyppkldeekdekaaelealsleekask 266
                   +WlvPy+f q+++ dvd+++m tf+efY tll+fvnf+Ly+s++l yppk+d + dek  el+a++le ++ +
    KKY19495.1 200 MWLVPYRFVQRVSGDVDYRIMGTFVEFYATLLGFVNFRLYTSIGLVYPPKFDVAADEKGGELAAFTLEGRKIS 272
                   ******************************************************************9988765 PP

  == domain 2  score: -7.1 bits;  conditional E-value: 3
  Pescadillo_N  82 fakklkkalakkekekakrle 102
                    +k++kk+++k+e+ + ++l 
    KKY19495.1 609 AKKRVKKQKEKDEELERQKLM 629
                   233333333333333333332 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.9   1.1e+04      26      42 ..     280     296 ..     268     319 .. 0.52
   2 !   24.2   0.0   5.7e-09   3.4e-05       3      84 ..     351     461 ..     349     462 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.9
      BRCT_2  26 klIeknGGevvetitsa 42 
                 +++++nG + ++++++ 
  KKY19495.1 280 PKVITNGNTTTQNSEEV 296
                 44445554444444322 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 5.7e-09
      BRCT_2   3 klFeglrFYindaepspsreklkklIeknGGev...............veti..tsavyiviaesneee.................laekrkrrvvspk 67 
                 +lF +++FYi     ++ r+ l+ l +++G +                +     + +++iv  +   e+                  ++ ++r +v+p+
  KKY19495.1 351 DLFAPFTFYI---SREAPRHPLELLLRAFGCKRlgwdafvgegaythdE--AdpRITHQIVDRPPLPETslpriendvnapgrvrpGMRIPGRTYVQPQ 444
                 79********...67789*************988888777777654222..222333555555555555999999999999*****9************ PP

      BRCT_2  68 yIkdCikkgkllpleny 84 
                 +I dC+++g+ll ++ y
  KKY19495.1 445 WIWDCVNEGRLLRPDLY 461
                 ************88766 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.18   1.1e+03      37      69 ..      62      91 ..      37      94 .. 0.70
   2 !   10.9   0.0   7.5e-05      0.45       4      53 ..     351     421 ..     348     450 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.18
                ESSCSTTSSEEEESSSHSHHHHHHHHHHTTSEE CS
        BRCT 37 ttevskktthlvvgepesrslkylealklnipi 69
                t +++k++++l++       +k+ e+++l ++i
  KKY19495.1 62 TFYYTKDIQYLLHEPL---LQKFREQKALSKKI 91
                4466777777877666...55666666666555 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 7.5e-05
                 TTTTTEEEEEEESTSSHHHHHHHHHHHHTTCEE.............ESSCSTTSSEEEESSS...........H CS
        BRCT   4 llfhgckfvitgvldnftrdeleelikehGGkv.............ttevskktthlvvgep...........e 53 
                 +lf  ++f+i     + +r  le l++ +G+k              ++e ++++th +v+ p           +
  KKY19495.1 351 DLFAPFTFYI---SREAPRHPLELLLRAFGCKRlgwdafvgegaytHDEADPRITHQIVDRPplpetslprieN 421
                 78999*****...9999*******************************************99777555555431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2402  (0.133973); expected 358.6 (0.02)
Passed bias filter:                      719  (0.0401026); expected 358.6 (0.02)
Passed Vit filter:                       161  (0.00897987); expected 17.9 (0.001)
Passed Fwd filter:                        67  (0.00373696); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.43u 0.42s 00:00:01.85 Elapsed: 00:00:00.64
# Mc/sec: 3138.76
//
Query:       KKY19496.1  [L=674]
Description: hypothetical protein UCRPC4_g04479 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-14   54.2   0.0    1.2e-13   51.1   0.0    2.8  1  RRN9           RNA polymerase I specific transcription initia
  ------ inclusion threshold ------
      0.019   15.1   0.3      0.064   13.4   0.3    1.8  1  zf-C2H2_aberr  Aberrant zinc-finger
      0.073   13.6   8.7        1.1    9.8   0.9    2.8  2  zf-C2H2        Zinc finger, C2H2 type
        5.4    8.1   9.0         18    6.5   0.7    3.0  2  zf-C2H2_4      C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> RRN9  RNA polymerase I specific transcription initiation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   2.7e-17   1.2e-13       4      64 ..     124     181 ..     121     184 .. 0.87

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 2.7e-17
        RRN9   4 lraeDLslHLYnafaLkrrlrkaeseeaeaneekeekeqeefvpskrWtAWPlpadevPrt 64 
                 +r+ DLs+HL+na+aL  r r+a+s   + +e + ++   +f+p+++Wt+WPlp++evPr 
  KKY19496.1 124 IRDADLSAHLFNAHALELRERRATS---DLDEGNFAALDMTFAPTREWTSWPLPPSEVPRG 181
                 7899************999986655...457777888999*******************96 PP

>> zf-C2H2_aberr  Aberrant zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.3   1.4e-05     0.064      35      78 ..     591     634 ..     536     665 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.4e-05
  zf-C2H2_aberr  35 fslkCpvrkCsesivelentelleehlekehaakllellkelei 78 
                      + Cpvr C +  + ++   +l++h+++ h +  ++ +k le 
     KKY19496.1 591 APFNCPVRACRKFKIPFKSSTNLYQHIRRSHPEVDVAEVKRLER 634
                    5679******99999****************9776777766553 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   1.5    0.0019       8.6       8      23 .]     548     563 ..     547     564 .. 0.89
   2 ?    9.8   0.9   0.00025       1.1       2      23 .]     594     621 ..     593     621 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0019
                 EEESSHHHHHHHHHCC CS
     zf-C2H2   8 ksFkrksnLkrHirtH 23 
                  +F++  +L++Hir H
  KKY19496.1 548 HVFNSARMLNQHIREH 563
                 68*************6 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00025
                 EET..TTT...EEESSHHHHHHHHHC.C CS
     zf-C2H2   2 kCp..dCg...ksFkrksnLkrHirt.H 23 
                  Cp   C     +Fk++ nL +Hir+ H
  KKY19496.1 594 NCPvrACRkfkIPFKSSTNLYQHIRRsH 621
                 5666666666689*************99 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   2.1     0.015        67       9      24 .]     549     564 ..     536     564 .. 0.90
   2 ?    6.5   0.7     0.004        18       1      24 []     593     621 ..     593     621 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.015
   zf-C2H2_4   9 sFsskkaLlrHlkthH 24 
                 +F+s + L++H++ hH
  KKY19496.1 549 VFNSARMLNQHIREHH 564
                 7999999********* PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.004
   zf-C2H2_4   1 fkCpi..C...gksFsskkaLlrHlkthH 24 
                 f Cp+  C   + +F+s+++L +H+++ H
  KKY19496.1 593 FNCPVraCrkfKIPFKSSTNLYQHIRRSH 621
                 66888888888889************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.41s 00:00:01.17 Elapsed: 00:00:00.61
# Mc/sec: 3338.73
//
Query:       KKY19497.1  [L=722]
Description: hypothetical protein UCRPC4_g04480 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-10   39.5   0.0    3.9e-09   36.8   0.0    2.2  1  Dynamin_N    Dynamin family
    1.1e-05   24.9   0.0    1.9e-05   24.1   0.0    1.4  1  AIG1         AIG1 family
    1.5e-05   25.0   0.2    0.00051   20.1   0.1    2.7  2  MMR_HSR1     50S ribosome-binding GTPase
     0.0043   17.4   0.0      0.011   16.1   0.0    1.7  1  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
      0.042   13.4   0.3        5.7    6.4   0.0    2.4  2  AAA_7        P-loop containing dynein motor region
      0.051   13.5   0.2        0.2   11.5   0.1    2.0  2  RsgA_GTPase  RsgA GTPase
      0.061   13.8   0.0       0.14   12.6   0.0    1.6  1  ABC_tran     ABC transporter
      0.069   12.4   0.0       0.21   10.8   0.0    1.6  1  KAP_NTPase   KAP family P-loop domain
       0.11   12.7   0.0       0.89    9.8   0.0    2.5  3  AAA_22       AAA domain
       0.21   11.8   0.5        6.3    7.1   0.1    2.3  2  Roc          Ras of Complex, Roc, domain of DAPkinase
        1.6    7.8   6.1        2.5    7.1   6.1    1.2  1  DUF2457      Protein of unknown function (DUF2457)


Domain annotation for each model (and alignments):
>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   2.4e-12   3.9e-09       1     165 [.     156     426 ..     156     429 .. 0.72

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 2.4e-12
                 EEEEEBTTTTHHHHHHHHHTS--S-.--SSS---S-EEEEE...........................................CCT---CCS...SSE CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilp.rgpnptTrrplelql...........................................geeeeaseravkeel 55 
                 i +vG+  +GKSS ln+Ll+ + l  +g   ++ + ++ ++                                           +  e a +  ++eel
  KKY19497.1 156 IGLVGDAGQGKSSTLNSLLETEDLAtVGDSGVSVTSFVTEYsqklsqqnvpyvvvvktmswkdietllrefidkalrglpghpdR--EGAGDFLSQEEL 252
                 789****************976555467666655555555522555555555555555555555555555555444444433211..111122222222 PP

                 EEE.T-EB--CHHHHHHHHHHHHHHHTSSSS--SS................................................................ CS
   Dynamin_N  56 kek.ekkledfsevreeieketekiagankgiskk................................................................ 89 
                  +  ++ ++ f  +r+ + ket            +                                                                
  KKY19497.1 253 DSIdSESESAFATLRKIFPKET------------Idniercsfgqtgyvtrilkkllpalqalewpgdmhnlswhgsaasigecqglvrkftqhklsaf 339
                 2224444444444444444444............044455555566789999999******************************************** PP

                 ...-EEEEEEETTS-SEEEEE---B-SSSGTTSHHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTT........EEEEE CS
   Dynamin_N  90 ...villkilsllvkgltlvDlPGldsvnkrdqelvkeyikkadiilavtsanhdlsnsealflarevdpkgkr........tivvl 165
                    + ++ + ++l +g++l D PG++++n  + +++++y  ++d i++v +    +sn+ +l+  ++ +   +r        ti v+
  KKY19497.1 340 ieiMRVYLDSKILSSGVVLADIPGFHDTNGLRVKVAEKYSARCDGIFVVANIGRIASNATVLDTIKSFRRLRRRgdikgylpTITVI 426
                 **9999999********************************************9999999999888888777776666666666555 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.2e-08   1.9e-05       2     118 ..     155     277 ..     154     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.2e-08
                 EEEEESSTTSSHHHHHHHHHTS--SS--T.TTS---SS-EEEEE...EETTEEEEEEE--SCCCTTCCHHCHHHHHHHHH..HHCTT-ESEEEEEEETT CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkkaFeskl.saqsvtkkcqkksr...twdgkkinViDTPglfdlsvsadkiskeivrcl..llseegihalllvlslg 94 
                 +i lvG  g GkS+T Ns+l+++   +   s  svt+ ++++s+   +++   ++V+ T +  d+++   + + +  r l  +  +eg   +l   +l+
  KKY19497.1 155 RIGLVGDAGQGKSSTLNSLLETEDLATVGdSGVSVTSFVTEYSQklsQQNVPYVVVVKTMSWKDIETLLREFIDKALRGLpgHPDREGAGDFLSQEELD 253
                 6779******************99766541446777777777762214444678999**9999999977666666777763356899999999999999 PP

                 B-SHHHHHHHHHHHHHHCGGGGGG CS
        AIG1  95 rfteedekalktlkelFGekilky 118
                  +++e e+a++tl+++F ++ +++
  KKY19497.1 254 SIDSESESAFATLRKIFPKETIDN 277
                 9*99999*******9999987765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   3.1e-07   0.00051       1      93 [.     155     397 ..     155     427 .. 0.85
   2 ?   -3.4   0.0       6.1   9.9e+03      66      84 ..     628     645 ..     581     669 .. 0.55

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.1e-07
                 EEEEEESTTSSHHHHHHHHHTS..TEEESSST.TSSSSEEEEEEEETTEE................................................. CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge..kaivsdkp.gtTrdinegrvklkgke................................................. 47 
                 ++++vG    GKS+ +n+l+++   a v+d    +T  ++e+  kl++++                                                 
  KKY19497.1 155 RIGLVGDAGQGKSSTLNSLLETedLATVGDSGvSVTSFVTEYSQKLSQQNvpyvvvvktmswkdietllrefidkalrglpghpdregagdflsqeeld 253
                 699****************986557888776657888888887776554478899999999999999******************************** PP

                 ................................................................................................... CS
    MMR_HSR1  48 ................................................................................................... 47 
                                                                                                                    
  KKY19497.1 254 sidsesesafatlrkifpketidniercsfgqtgyvtrilkkllpalqalewpgdmhnlswhgsaasigecqglvrkftqhklsafieimrvyldskil 352
                 *************************************************************************************************** PP

                 ...EEEEECGGCSS.HHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHH CS
    MMR_HSR1  48 ...ielvDtpGlie.gaseekglgkaflaleeadlillvvdaseeklkpl 93 
                    ++l+D+pG ++ ++  + ++++++    ++d i++v ++  + ++ +
  KKY19497.1 353 ssgVVLADIPG-FHdTNGLRVKVAEKYS--ARCDGIFVVANIG-R-IASN 397
                 ***********.7612333334555555..489******9987.2.3333 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.1
                 HHHHHHHHHCTSEEEEEEE CS
    MMR_HSR1  66 lgkaflaleeadlillvvd 84 
                 +++++ ++ + dl  + ++
  KKY19497.1 628 VSHTVVKMVQ-DLTYHTIK 645
                 1222222222.55555554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   6.7e-06     0.011      29      89 ..     158     235 ..     137     297 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.7e-06
      AAA_16  29 lsGesGvGKsslvrellralekd.......ggif...lrgkcdql.esaipysalaqalareellrqllde.........a 89 
                 l+G++G GKss +++ll+  ++d       g+ +   +++  ++l ++++py++++++ ++ + ++ ll+e         +
  KKY19497.1 158 LVGDAGQGKSSTLNSLLE--TEDlatvgdsGVSVtsfVTEYSQKLsQQNVPYVVVVKTMSW-KDIETLLREfidkalrglP 235
                 89***************8..33344677664444343666666668999***999999988.9999999995433322220 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0035       5.7      28      56 ..     148     176 ..     140     180 .. 0.83
   2 ?    5.1   0.0     0.009        15      36      89 ..     179     230 ..     175     241 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0035
       AAA_7  28 lllknkkpvllvGptGtGKtviikdllkk 56 
                   l+ ++ + lvG++G GK++++++ll++
  KKY19497.1 148 NQLTTSYRIGLVGDAGQGKSSTLNSLLET 176
                 5567778899***************9976 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.009
       AAA_7  36 vllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekr 89 
                 +  vG++G++ t+ ++++ +kl+++++ ++++   +++s +++ +++ + ++k 
  KKY19497.1 179 LATVGDSGVSVTSFVTEYSQKLSQQNVPYVVV--VKTMSWKDIETLLREFIDKA 230
                 5689*******************666544433..34455555555555555555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00012       0.2     100     127 ..     154     181 ..     123     221 .. 0.81
   2 ?   -1.6   0.0       1.4   2.2e+03     150     163 ..     353     366 ..     350     368 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
                  SEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelkt 127
                    + lvG  G GKS+ +n+ll++++l+t
   KKY19497.1 154 YRIGLVGDAGQGKSSTLNSLLETEDLAT 181
                  45569****************9988887 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.4
                  TTTEEEESS-SSSS CS
  RsgA_GTPase 150 aegglliDtPGfre 163
                  ++g +l+D PGf+ 
   KKY19497.1 353 SSGVVLADIPGFHD 366
                  67899*******86 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   8.7e-05      0.14       8      40 ..     150     183 ..     144     289 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.7e-05
                 EETTSEEEEEESTTSSHHHHHHHHTTSS--.SEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllkp.teG 40 
                 l  + ++++vG+ G GKS+ l+ l++ ++  t G
  KKY19497.1 150 LTTSYRIGLVGDAGQGKSSTLNSLLETEDLaTVG 183
                 5667799************999998877653444 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00013      0.21       9      49 ..     142     187 ..     139     250 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
  KAP_NTPase   9 adilseptlatpivvgLygkWGsGKssllnkledelkefa.....k 49 
                 a+ l+e++l+t++ +gL g  G GKss ln+l +  +         
  KKY19497.1 142 AKNLNENQLTTSYRIGLVGDAGQGKSSTLNSLLETEDLATvgdsgV 187
                 889****************************988776665555551 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00055      0.89      10      66 ..     158     229 ..     151     282 .. 0.72
   2 ?   -3.2   0.0       5.6   9.2e+03      40      70 ..     354     384 ..     328     416 .. 0.62
   3 ?   -2.0   0.0       2.5   4.1e+03      93     105 ..     507     521 ..     495     535 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00055
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee...................erpevvfvtlpsstsskdllrellralgl 66 
                 ++G +G GK+ +l+ lle+ d +    +                    +  v +v + + +s+kd+ + l ++++ 
  KKY19497.1 158 LVGDAGQGKSSTLNSLLETEDLA----TvgdsgvsvtsfvteysqklSQQNVPYVVVVKTMSWKDIETLLREFIDK 229
                 79*****************8743....2344577777777777776544444466666666777775444444444 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.6
      AAA_22  40 pevvfvtlpsstsskdllrellralglelka 70 
                 ++vv+ ++p+  +   l+ ++++++  ++++
  KKY19497.1 354 SGVVLADIPGFHDTNGLRVKVAEKYSARCDG 384
                 5566666666666666666666666665554 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.5
      AAA_22  93 elliiDEaqhlr..s 105
                 +++ iD+a++++   
  KKY19497.1 507 AFFGIDNADYFNdeD 521
                 56779*****97541 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0038       6.3       2      21 ..     156     175 ..     155     180 .. 0.88
   2 ?    2.4   0.0      0.11   1.8e+02       3      40 ..     180     217 ..     178     227 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0038
                 EEEESSTTSSHHHHHHCHCT CS
         Roc   2 vvlvGdsgvGKtsllkrfve 21 
                 + lvGd+g+GK+s l++++e
  KKY19497.1 156 IGLVGDAGQGKSSTLNSLLE 175
                 779************99986 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.11
                 EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEE CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekstigvdfltke 40 
                   vGdsgv  ts+++++ ++  +++    + v++++++
  KKY19497.1 180 ATVGDSGVSVTSFVTEYSQKLSQQNVPYVVVVKTMSWK 217
                 679***************98888887777777777664 PP

>> DUF2457  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   6.1    0.0015       2.5     291     337 ..      10      55 ..       5      87 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0015
     DUF2457 291 kaspkrlrSppPrrrgksPpkkrlrsPpprklfdrksprrlrspapt 337
                 +++ kr++S +P+ + +sPp kr rs +p +   ++ +   rsp+++
  KKY19497.1  10 ETTRKRMQSSSPQLK-ASPPPKRWRSTTPVEKRRKHESLAQRSPQSS 55 
                 567789999999554.8998899999888655566666667777663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.53
# Mc/sec: 4103.81
//
Query:       KKY19498.1  [L=163]
Description: hypothetical protein UCRPC4_g04481 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.027   14.8   3.1       0.04   14.2   3.1    1.3  1  THOC7         Tho complex subunit 7
       0.03   14.2   0.8      0.041   13.8   0.8    1.2  1  3HCDH_N       3-hydroxyacyl-CoA dehydrogenase, NAD binding do
      0.034   13.9   2.7      0.054   13.3   2.7    1.2  1  FAM184        Family with sequence similarity 184, A and B
      0.053   13.6   2.0      0.068   13.3   0.4    1.9  2  Swi5          Swi5
      0.067   13.1   1.2       0.13   12.1   1.2    1.5  1  Sec8_exocyst  Sec8 exocyst complex component specific domain
      0.094   13.0   0.2       0.38   11.0   0.0    2.0  2  TA0956        Thermoplasma acidophilum protein TA0956
       0.24   12.0   3.9         10    6.7   0.0    2.8  3  ATP-cone      ATP cone domain
       0.62   10.3   4.1        2.4    8.4   2.5    2.3  2  DUF5446       Family of unknown function (DUF5446)


Domain annotation for each model (and alignments):
>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   3.1   1.8e-05      0.04      16     107 ..      71     158 ..      49     159 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.8e-05
       THOC7  16 lkrltkrllklltslaesteeeleqlkedllldfaafelsie.rlqllakaner..ereryeaekeeieseieavreeieelkaqLeearatran 107
                 ++++++r+ +       +te++l + +++l   + +f + ie +++ + ++ne      +y + k+++  +ie++ e++e+ ++  ++ar+t ++
  KKY19498.1  71 FSKIIRRFES-------DTESALHEIEKTLRSAIDKFTSDIElQIESVGQSNESieVLHKYPEMKDDLTGAIEMATEQMEKNEQLAQRARQTAKQ 158
                 5566666666.......3345778888888888888888888888888888887757899*******************************9876 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.8   1.8e-05     0.041      31     106 ..      82     158 ..      72     162 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.8e-05
                 -HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHH.C-SEEEE-S-SSHHHHHHHHHHHHCCS-T CS
     3HCDH_N  31 seealekalekieksleklvekgklkeeeveaalarisfttdleeav.dadlviEavvEnlelKrkvfaelekiakp 106
                 +e+al++ ++++++ ++k+ ++ +l+ e+v +  + i++  ++ e++ d    iE ++E++e  +++ ++  ++ak+
  KKY19498.1  82 TESALHEIEKTLRSAIDKFTSDIELQIESVGQSNESIEVLHKYPEMKdDLTGAIEMATEQMEKNEQLAQRARQTAKQ 158
                 46788888999999999999999********************************************9999999876 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.7   2.4e-05     0.054     119     192 ..      71     149 ..      64     160 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.4e-05
      FAM184 119 faqlqeqleqekekaLeelrkkhreeveeLlkeqeaqsekllkeqekl.....eekhkaeveklkeeveelekekkklv 192
                 f+++  ++e++ e+aL e++k+ r  ++++    e q e++ +++e +       ++k++++ + e + e  +++++l+
  KKY19498.1  71 FSKIIRRFESDTESALHEIEKTLRSAIDKFTSDIELQIESVGQSNESIevlhkYPEMKDDLTGAIEMATEQMEKNEQLA 149
                 889999****************************************993333333445666666655544444444443 PP

>> Swi5  Swi5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.4     3e-05     0.068       6      51 ..      84     129 ..      79     141 .. 0.87
   2 ?   -0.9   0.1      0.78   1.7e+03       8      25 ..     138     155 ..     130     159 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHH CS
        Swi5   6 keleeqleelekelaelkeelkekkdpeetvkrhIklLheYNEiKD 51 
                 ++l+e +++l+++++++++  + + ++    ++ I+ Lh+Y E+KD
  KKY19498.1  84 SALHEIEKTLRSAIDKFTSDIELQIESVGQSNESIEVLHKYPEMKD 129
                 56777888899999999999999989*******************9 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.78
                 HHHHHHHHHHHHHHHHHH CS
        Swi5   8 leeqleelekelaelkee 25 
                   eq+e+ e+  + +++ 
  KKY19498.1 138 ATEQMEKNEQLAQRARQT 155
                 445555555555555544 PP

>> Sec8_exocyst  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.2   5.8e-05      0.13      25     118 ..      52     154 ..      43     163 .] 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.8e-05
  Sec8_exocyst  25 elalsllDdssvGlahrlkefkqlkkqieeaLqevvnehhqaFnssiasYsk....ilssiqesqekvs......elKesleeakkklstkkkeLke 111
                   ++ l+l D  s G++++   f+++ +++e++ +++ +e  ++  s+i  +++     ++s+ +s+e+++      e+K++l  a +  +++ ++ ++
    KKY19498.1  52 QMVLTLFDACS-GKSNKTLIFSKIIRRFESDTESALHEIEKTLRSAIDKFTSdielQIESVGQSNESIEvlhkypEMKDDLTGAIEMATEQMEKNEQ 147
                   78999******.***********************************99986222234667778877762233335566777777666666666666 PP

  Sec8_exocyst 112 lnarsak 118
                   l++r ++
    KKY19498.1 148 LAQRARQ 154
                   6666655 PP

>> TA0956  Thermoplasma acidophilum protein TA0956
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00017      0.38      25      62 ..       5      42 ..       1      47 [. 0.88
   2 ?   -1.1   0.1      0.95   2.1e+03      21      22 ..     106     107 ..      82     150 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00017
                HHHHHHHHHHHHTTS-.-CCHHHHHHHHH---S---TT CS
      TA0956 25 klreslealadvldselieesleefieefartdeimPe 62
                +   sl+++ d+l  +lie+  e +++e+  +  +m +
  KKY19498.1  5 NSVPSLKKILDILRANLIEHGAESYVSEYMEAHYVMCD 42
                56789*************************99999975 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.95
                 EE CS
      TA0956  21 vv 22 
                 ++
  KKY19498.1 106 LQ 107
                 33 PP

>> ATP-cone  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0046        10      50      79 ..       6      35 ..       1      39 [. 0.87
   2 ?    5.7   0.3      0.01        23      22      59 ..      78     123 ..      64     128 .. 0.70
   3 ?   -0.8   0.0       1.1   2.4e+03      18      39 ..     131     151 ..     125     159 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0046
                IT-BHHHHHHHHHHHHHHSS-HHHHHHHHH CS
    ATP-cone 50 dgisteeIqdlvektliehpdyavaaayil 79
                + +s ++I d++  +lieh+  +++  y++
  KKY19498.1  6 SVPSLKKILDILRANLIEHGAESYVSEYME 35
                558999********************9986 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.01
                 HHHHHHH........-HHHHHHHHHHHHHHHHHHHIIT-BHHHHHH CS
    ATP-cone  22 iekAceg........seeeideiaeeveaevrkrlrdgisteeIqd 59 
                  e   e+         +  id++++ +e+++++ ++++ s+e +++
  KKY19498.1  78 FESDTESalheiektLRSAIDKFTSDIELQIESVGQSNESIEVLHK 123
                 4444444443333334446*************99999999998887 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.1
                 HHHHHHHHHHH-HHHHHHHHHH CS
    ATP-cone  18 IkraiekAcegseeeideiaee 39 
                 ++ aie A e+ +e+ +++a++
  KKY19498.1 131 LTGAIEMATEQ-MEKNEQLAQR 151
                 56678888777.3333444333 PP

>> DUF5446  Family of unknown function (DUF5446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.5    0.0011       2.4      15      52 ..      80     123 ..      73     143 .. 0.65
   2 ?    2.1   0.4     0.098   2.2e+02      10      42 ..     120     152 ..     114     156 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0011
     DUF5446  15 eeiEeeltevEkelseavnete......aekeekeeerldllek 52 
                 +++E+ l e+Ek l +a+ + +      +e   + +e +++l k
  KKY19498.1  80 SDTESALHEIEKTLRSAIDKFTsdielqIESVGQSNESIEVLHK 123
                 799**************987651111104444455666666665 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.098
     DUF5446  10 vLqlLeeiEeeltevEkelseavneteaekeek 42 
                 vL+   e+ ++lt + +  +e++ ++e+ ++ +
  KKY19498.1 120 VLHKYPEMKDDLTGAIEMATEQMEKNEQLAQRA 152
                 677777888888888888888999888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1525  (0.0850577); expected 358.6 (0.02)
Passed bias filter:                      834  (0.0465168); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.60u 0.48s 00:00:01.08 Elapsed: 00:00:00.58
# Mc/sec: 839.95
//
Query:       KKY19499.1  [L=499]
Description: putative succinate-semialdehyde dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.7e-169  564.2   0.5   1.9e-169  564.1   0.5    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  564.1   0.5    1e-173  1.9e-169       1     462 []      25     488 ..      25     488 .. 0.97

  Alignments for each domain:
  == domain 1  score: 564.1 bits;  conditional E-value: 1e-173
                 EET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHH CS
      Aldedh   1 wveses.etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlr 98 
                 w++++s +t+e ++Patg+ i+++p+ +a+d ++a+aaA+eafk+++k++a+eR+++Lrk+ dl+ +++e++a+l+t+e+Gkp+a+a++e ++a+++++
  KKY19499.1  25 WTTAASgKTFEIHDPATGKLIGTCPEFDAADTEKAIAAAAEAFKSFKKTSARERSKLLRKWYDLMVQNAEDIATLITWENGKPFADAKGEAAYAANFFE 123
                 777888678****************************************************************************************** PP

                 HHHHHHHHHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SS..TC CS
      Aldedh  99 yyaelaeklegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgs..gs 194
                 ++ e+a + +g+++p   +g++a++ r+P+Gv+g ItPWNfP++++++k+ pa+aaG+tvv K   etp++a +++el+++ag+P+gv+n++t      
  KKY19499.1 124 WFSEEAPRAYGDTIPAtVPGNRAFTIRQPVGVCGFITPWNFPAAMITRKVGPAIAAGCTVVAKSPGETPFTANAVVELAKRAGIPPGVVNIITALenTP 222
                 ****************55**************************************************************************8642278 PP

                 CHHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTS.HHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHH CS
      Aldedh 195 evgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivleda.DldkaveaivkgafgnaGQvCiaasrllvqesiydefveklvea 292
                 +vge l++hp ++kvsftGst+vg+ ++k+++++lk++++ElGG++p+iv++d+ Dld+av++++++ f+++GQ+C++a+r++vq++iydef ++l+e+
  KKY19499.1 223 QVGEVLTTHPTIKKVSFTGSTNVGKLLMKQSSSTLKKLSMELGGNAPFIVFDDCpDLDAAVAGCIASKFRSSGQTCVCANRIYVQSGIYDEFAKRLTEK 321
                 9************************************************************************************************** PP

                 HHT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSST.TEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHH CS
      Aldedh 293 akklkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekg.yfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieia 390
                 ++++k+g ++d+ ++ GP+i+ +++ekv+++v++a+++gak+ +Gg   ++ ++ g +f++Ptvl+n++pdm+i  eE+FGPV+ +++fk+e+e++++a
  KKY19499.1 322 VNTFKIGYGFDDGVTHGPVIHDRAVEKVHRHVQDATSKGAKVTTGG---QKLPDLGsNFYKPTVLTNMKPDMDINAEETFGPVAGLFEFKTEKEVVNLA 417
                 **********************************************...44455555****************************************** PP

                 HSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 391 NdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 N++e+GLa++ f+kd++r+ rvae+le+G+v++N+   +++ + pfgGvkqSg+Greg+k+g+eey+ +ktv
  KKY19499.1 418 NESEVGLAGYFFSKDIQRIYRVAEALEVGMVGVNTGLISDPAT-PFGGVKQSGFGREGSKYGIEEYMIIKTV 488
                 *******************************************.**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.42s 00:00:01.08 Elapsed: 00:00:00.57
# Mc/sec: 2638.64
//
Query:       KKY19500.1  [L=579]
Description: putative lysophospholipase plb1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-187  624.1   7.4   1.6e-187  623.9   7.4    1.0  1  PLA2_B    Lysophospholipase catalytic domain


Domain annotation for each model (and alignments):
>> PLA2_B  Lysophospholipase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  623.9   7.4  8.7e-192  1.6e-187       1     491 []      32     521 ..      32     521 .. 0.97

  Alignments for each domain:
  == domain 1  score: 623.9 bits;  conditional E-value: 8.7e-192
      PLA2_B   1 iaiavSGGGyramltgaGvlkAldsRtdnat...glgGlLqsatYlaGlsGgsWlvgslavNnftsvqelskkkeddsvweleksiln.p..eglelvk 93 
                 +a+a+SGGG+ra+++gaG++ A+d+Rt ++t   +lgG++q++tYlaGlsGgsWlv+s+++Nnf++v++l+    +++vwe+++si++ p  +g++l++
  KKY19500.1  32 LAVAFSGGGWRALMNGAGAMTAFDNRTADSTtsnHLGGIVQASTYLAGLSGGSWLVSSIYMNNFSTVPALQY---SNDVWEFQNSIIEgPpsDGIQLLS 127
                 69*************************6665589*************************************9...799*********984579****** PP

      PLA2_B  94 nikrydeivdevekKkdagfnvsltDiwGralseklveaeeggvnltlsslkdaekfqeaemplPiivadgrkpgetvinlNatvfEfsPyelgswdak 192
                 ++ +++++ d+v+ K+dag+++++tD+wGr ls++l++a++gg+++t+ss++  e fq+++ p+P+i+ad+r+pget i  N+t+fE++P+e+g+wd++
  KKY19500.1 128 TVGYWESVYDQVDGKEDAGYETTITDYWGRTLSYQLINATSGGPAYTWSSIALDEDFQNGKQPMPVIIADERAPGETLIPGNTTIFEMNPFEFGTWDPT 226
                 *************************************************************************************************** PP

      PLA2_B 193 lnsFvpveylGtklsnGtvvkkgkcvagfdnaGflmgtsstlFnevlle.instsmlesllkellkkllkdlsedsedisqyapnpfkdaeeenqnatq 290
                 + +F+p++ylGt+++ G+vv++ +cv gfdnaG+l gtss+lFn+++le i+++s l+s+l+++++++ +d+ +++edi+ y+pnpf+ +       t+
  KKY19500.1 227 VYGFIPLKYLGTNFTSGSVVNTSSCVVGFDNAGYLFGTSSSLFNQLVLEaITTNSSLPSFLTSAIQSIAEDIGSSNEDIAEYKPNPFYRYA----LDTN 321
                 *********************************************99983555559*********************************99....7899 PP

      PLA2_B 291 sivesktLdlvdggedgqniplvpllqkerevdvifaldnsadteeswpdgvslvatyeRvle....skqvkgkkfpyvpdqntfvnlgLnkrptffGc 385
                 + ++s++L lvdgged +nipl+pl+q+ r vd+i a+d+sadt+++wp+g+slvatyeR ++    ++ ++g++fp +pd ntfvnlgLn+rptffGc
  KKY19500.1 322 PAANSSSLTLVDGGEDLENIPLHPLIQPVRGVDIILAIDSSADTDTNWPNGTSLVATYERSTNangtTNLSNGTSFPSIPDVNTFVNLGLNSRPTFFGC 420
                 99************************************************************9877667789*************************** PP

      PLA2_B 386 DarnltdlsatvdestpPlvvylpnekysylsnlstfklsykdseregliengfeaatqdnetdddefaacvacaiirRklerknltlpsecekcFedy 484
                  a+n+t+      +s pP++vylpn++y+++sn+stf+lsy++++r+++i+ng+++at+ n +  +++++c+aca+++R+  r+ +  p  c++cF+ y
  KKY19500.1 421 NASNTTNP-----SSPPPIIVYLPNAPYTTNSNVSTFTLSYSETKRDAIIQNGYNVATMANGSLASNWTTCLACAMMSRSWYRTSTDIPTICQECFDSY 514
                 ********.....999*********************************************************************************** PP

      PLA2_B 485 cwngtvd 491
                 cw+gt++
  KKY19500.1 515 CWDGTLN 521
                 ****975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.54
# Mc/sec: 3256.41
//
Query:       KKY19501.1  [L=1071]
Description: putative transcription initiation protein spt5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-24   83.2   0.0    1.6e-23   82.4   0.0    1.4  1  Spt5-NGN  Early transcription elongation factor of RNA pol II
    6.4e-17   60.9  12.8     0.0011   18.9   2.0    6.0  6  KOW       KOW motif
    9.1e-17   61.9  14.4    9.1e-17   61.9  14.4    3.9  2  Spt5_N    Spt5 transcription elongation factor, acidic N-term
    2.3e-14   53.7  60.5      7e-08   32.9  18.4    4.2  3  CTD       Spt5 C-terminal nonapeptide repeat binding Spt4
    2.1e-05   24.7   0.7     0.0038   17.5   0.0    2.8  3  DUF3912   Protein of unknown function (DUF3912)


Domain annotation for each model (and alignments):
>> Spt5-NGN  Early transcription elongation factor of RNA pol II, NGN section
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.0   4.5e-27   1.6e-23       1      84 []     235     321 ..     235     321 .. 0.96

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 4.5e-27
    Spt5-NGN   1 siwavkctagqErevalslmkkilelakken.leIkSvfapde.lkGyiyvEAdrkaaveralegipnvrgvv.qglvpikEvedll 84 
                 siw ++c++g+Erev++++mkk+ e+ +++n + I+S+f++ + + Gy+y+EA++ka++++a+egi+n++ +    lvp+kE++dll
  KKY19501.1 235 SIWGIQCRPGKEREVVFNIMKKFQERLNSRNpMRIFSAFERGGpMAGYVYIEARKKADIDDAIEGIMNIYVRGkTVLVPVKEMPDLL 321
                 69************************9999989*********99**************************9984678********97 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   6.3e-07    0.0023       1      29 [.     331     361 ..     331     363 .. 0.87
   2 !    8.3   0.3   0.00065       2.3       1      22 [.     501     522 ..     501     523 .. 0.95
   3 ?   -1.4   0.0      0.74   2.7e+03       5      16 ..     529     540 ..     528     543 .. 0.85
   4 !   18.9   2.0   2.9e-07    0.0011       1      29 [.     554     583 ..     554     585 .. 0.94
   5 ?    1.8   0.0     0.071   2.5e+02      13      24 ..     687     698 ..     687     703 .. 0.91
   6 !   15.8   0.0   2.7e-06    0.0098       2      31 ..     769     798 ..     768     799 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 6.3e-07
                 TTSEEEESSSTTTTCEEEEEEEETTT..TEE CS
         KOW   1 pGdhVkVvsGphkGktGkVvkvdqhk..vrV 29 
                 pG +V++ +G++ G+ +++++v+ +   v+V
  KKY19501.1 331 PGGWVRIKRGKYTGDLAQIEEVETNGldVTV 361
                 89********************998855444 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00065
                 TTSEEEESSSTTTTCEEEEEEE CS
         KOW   1 pGdhVkVvsGphkGktGkVvkv 22 
                 pGdhV+V  G  +G tGkV +v
  KKY19501.1 501 PGDHVEVYEGEQRGITGKVASV 522
                 8******************876 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.74
                 EEESSSTTTTCE CS
         KOW   5 VkVvsGphkGkt 16 
                  +V+ G  +G+t
  KKY19501.1 529 IQVTEGDLAGQT 540
                 58********98 PP

  == domain 4  score: 18.9 bits;  conditional E-value: 2.9e-07
                 TTSEEEESSS.TTTTCEEEEEEEETTTTEE CS
         KOW   1 pGdhVkVvsG.phkGktGkVvkvdqhkvrV 29 
                 +GdhVkV++G +++++ G+Vv++ +++v+V
  KKY19501.1 554 EGDHVKVIGGsRYRDELGMVVRIKDDRVTV 583
                 5*********99***************998 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.071
                 TTCEEEEEEEET CS
         KOW  13 kGktGkVvkvdq 24 
                 +GktG+++++ +
  KKY19501.1 687 EGKTGTILHIHR 698
                 7********986 PP

  == domain 6  score: 15.8 bits;  conditional E-value: 2.7e-06
                 TSEEEESSSTTTTCEEEEEEEETTTTEEEE CS
         KOW   2 GdhVkVvsGphkGktGkVvkvdqhkvrVfv 31 
                 G++V +  Gp+kG  G+V++  + ++rV +
  KKY19501.1 769 GKTVTIRKGPYKGLMGIVKDASESTARVEL 798
                 9**********************9999976 PP

>> Spt5_N  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -34.1  50.6         5   1.8e+04      14      21 ..      80      91 ..       4     135 .. 0.46
   2 !   61.9  14.4   2.5e-20   9.1e-17       1      99 []     137     229 ..     137     229 .. 0.82

  Alignments for each domain:
  == domain 1  score: -34.1 bits;  conditional E-value: 5
                X....XXXXXXX CS
      Spt5_N 14 e....eeeeeev 21
                     ee+++e+
  KKY19501.1 80 AlganEEDDDEA 91
                122223333333 PP

  == domain 2  score: 61.9 bits;  conditional E-value: 2.5e-20
                 XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..X-GGGG CS
      Spt5_N   1 FiddeAeVdddeeeeeeeeeveggeddfiaeeeaeeeeed..serddrshreldrrrqaeededaeeiaealeeRYgrsskkayrgeaeessevpqqlL 97 
                 F+++eAeVd+++e+e ee+e++ +   f+a+ + ++ +ed  ++rddr+hreldr+r+ e++ dae++ae+l+eRYgr  ++a+ ++a +   vp++lL
  KKY19501.1 137 FFEEEAEVDEEDEDEAEEDELGAE---FVADTHPDDLDEDgvADRDDRRHRELDRQRELEQSLDAEKQAEMLRERYGR--RTATATNAIA---VPKRLL 227
                 99*********9776666666554...55555555555557789********************************98..6666688888...****** PP

                 -- CS
      Spt5_N  98 LP 99 
                 LP
  KKY19501.1 228 LP 229
                 *9 PP

>> CTD  Spt5 C-terminal nonapeptide repeat binding Spt4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   9.1   1.3e-10   4.6e-07       2      53 ..     837     890 ..     836     893 .. 0.76
   2 !   32.9  18.4   1.9e-11     7e-08      11      70 ..     891     983 ..     885     983 .. 0.88
   3 ?    3.5  28.1     0.031   1.1e+02       1      68 [.     964    1037 ..     964    1060 .. 0.57

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.3e-10
         CTD   2 srTPawnsaggsrTPawgadgsrTpayggagsrtPaw.nagskTPahg...aagsr 53 
                 +rTP  +  + sr P w+  gsrTp   g+g+rtPaw  ag++TPa+g    +gs+
  KKY19501.1 837 GRTPYGGV-TPSRVPEWNG-GSRTPLAAGDGGRTPAWgAAGGRTPAWGgggTNGSS 890
                 68887776.8899999974.999999999999999998888999999955545554 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 1.9e-11
         CTD  11 ggsrTPawgadgsrT.........paygga.......gsrtPawnagskTPahg.................aagsrTPayktawdgsrTpayg 70 
                 ++srTPaw+ +gs+T         +aygg+       g+rtP+w+++++TP+ g                 a+gsrTP  +t  +g rTpa+g
  KKY19501.1 891 TSSRTPAWKPSGSQTsyggasggmTAYGGSsggsdlgGGRTPVWTSSARTPYGGdhgfsgsgssnsgfdtfASGSRTPYGGTGASGGRTPAWG 983
                 56777777777777777777777789*99999**********************************************9977777*******7 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.031
         CTD    1 gsrTPawns.aggsrTPawgadgsrTpayggagsrtPawnagskTPahg....aagsrTPay......ktawd.gsrTpa 68  
                  gsrTP  ++ a+g+rTPawga   +  +y+   + tPa ++++ TP+ +    aa++ TP +      + a+d  ++Tpa
  KKY19501.1  964 GSRTPYGGTgASGGRTPAWGA---TPKPYD---APTPAAHNDYSTPYASaptpAASAATPRFaadaptPRAYDnSAPTPA 1037
                  79****9999*********75...433333...35555555555555554544444555555333333222223233333 PP

>> DUF3912  Protein of unknown function (DUF3912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.4   1.2e+04      10      27 ..     335     352 ..     332     358 .. 0.77
   2 ?    4.5   0.1     0.012        42      16      51 ..     565     599 ..     555     615 .. 0.79
   3 !   17.5   0.0   1.1e-06    0.0038       5      48 ..     767     809 ..     761     829 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.4
     DUF3912  10 vyvkdGPyrnklGvvkkk 27 
                 v +k+G y + l  +  +
  KKY19501.1 335 VRIKRGKYTGDLAQIEEV 352
                 6699****9999877665 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.012
     DUF3912  16 PyrnklGvvkkkeqedddhftvv..iddqdidvelkdi 51 
                  yr+ lG+v +    +dd  tv   +  q+i+v  kd+
  KKY19501.1 565 RYRDELGMVVR---IKDDRVTVLtdVSMQEITVFSKDL 599
                 59*********...456666665589999999988885 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 1.1e-06
     DUF3912   5 ilGqkvyvkdGPyrnklGvvkkkeqedddhftvviddqdidvel 48 
                  +G++v +++GPy++ +G+vk   +e +    +  + + i+ve+
  KKY19501.1 767 TIGKTVTIRKGPYKGLMGIVKD-ASESTARVELHSKSKIITVEK 809
                 68*******************9.778887777777888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1071 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       976  (0.0544369); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.18u 0.40s 00:00:01.58 Elapsed: 00:00:00.57
# Mc/sec: 5680.39
//
Query:       KKY19502.1  [L=553]
Description: putative acyldehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-43  147.2   0.2    5.8e-43  146.7   0.2    1.2  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    1.4e-20   73.3   0.1      3e-20   72.2   0.1    1.6  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    3.5e-18   65.5   0.1    6.8e-18   64.6   0.1    1.5  1  Cyt-b5         Cytochrome b5-like Heme/Steroid binding domain
    3.5e-18   66.3   0.0    9.7e-18   64.9   0.0    1.8  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    1.4e-09   38.4   0.0    2.1e-09   37.8   0.0    1.2  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
  ------ inclusion threshold ------
        1.2    8.6   6.0        1.9    7.9   6.0    1.2  1  CAP_N          Adenylate cyclase associated (CAP) N terminal


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.7   0.2   1.9e-46   5.8e-43       1     148 [.     385     541 ..     385     543 .. 0.96

  Alignments for each domain:
  == domain 1  score: 146.7 bits;  conditional E-value: 1.9e-46
                    TBHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------......HHHHHH CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheRlavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpd......raeasm 90 
                    ++Gfrv+m+++nheR+++++++l++ r ++ee+++ya++r++fgk+li+h+++r kla+ma ++ea+ ++++++++++++++++      + +++ 
     KKY19502.1 385 NQGFRVIMTNFNHERIGIIIQCLRFSRVCFEECVKYANKRRTFGKKLIEHPVIRLKLAHMARQIEASYNWLENLIYQCEKMDETeamlklGGAIAS 480
                    79********************************************************************************999*********** PP

                    HHHHHHHHHHHHHHHHHHHHGGGTTSGGGH...HHHHHHHTHHHHHSSS-HHHHHHHHHHH CS
  Acyl-CoA_dh_1  91 aKlfaselaqevadlamqllGgaGyleeyp...verlyrdarvlrigeGtseiqrniiarr 148
                    +K++ + +++ +a++a q++Gg +y+++++   +erlyrd+r++ i +G++ei++++  r+
     KKY19502.1 481 LKAQSTTTFEFCAREASQIFGGLSYSRGGQggkIERLYRDVRAYAIPGGSEEIMLDLSIRQ 541
                    *************************86666677**********************987765 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.1   9.9e-24     3e-20       1      97 []     279     373 ..     279     373 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 9.9e-24
                    EEE---SS-SS-GGG---EE.EEETT.EEEEEEEEEEEETTTT-SEEEEEEETS-------EEEEEEE..GGGEEE-----BSS-TTS-EEEEEEE CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvktta.aerdggeyvlnGeKiwitnaaiatlalvlartekpdrarglslflvprdapgvsvrrieeklGlrglptgelvfe 95 
                    ++a+TEp+aGsdva+++ +a  ++dg++y++nGeK witn+ +++++++ +rt++p   +g+sl+l++r  +gvs rr++   G+ +  t++++fe
     KKY19502.1 279 CLAITEPDAGSDVANLTCEAkLSEDGKHYIVNGEKKWITNGIWCDYFTTAVRTGGPG-MNGVSLLLIER-GEGVSTRRMD-CQGVWSSGTTYVTFE 371
                    9*******************99999999************************99999.**********5.789******5.79************* PP

                    .. CS
  Acyl-CoA_dh_M  96 dv 97 
                    dv
     KKY19502.1 372 DV 373
                    97 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.1   2.3e-21   6.8e-18       3      73 ..       8      77 ..       6      78 .. 0.92

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 2.3e-21
                HHHTTTECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHGGEEEEE CS
      Cyt-b5  3 eelskhngkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkkylvGkl 73
                +++s+h ++++lw++++  VYD++ f ++hpGg++++++ aGkDa++ f+++ h+e +++k+  k+ +G l
  KKY19502.1  8 ADVSAHSKPDSLWIVVDEDVYDLTTFQDEHPGGKKILSRVAGKDASKQFWKY-HNEGILKKYKGKLQIGSL 77
                79**************************************************.*99999999555777765 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   3.2e-21   9.7e-18       2     113 .]     150     275 ..     149     275 .. 0.86

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 3.2e-21
                    HHHHHHHHHHHHHHHHHTHHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-.GGGTS--S............-HHHHHHHHHHHHHH-HHHHH.HHH CS
  Acyl-CoA_dh_N   2 eeqealrdtvrefaeeelaphaaewdeegefprelwkklaelGllgitvp.eeygGagl............dyleaaivaeelaradaglal.llg 83 
                    +++ alr++vre++e e++p+++ewde++++p +++k+++e G+l+  +  +ey                 d ++++++++el+ra++g+ +  l 
     KKY19502.1 150 QTHAALRAEVREWFEAEIEPYVTEWDEAKQVPGKIYKQMGERGYLAGLLGfKEYPTHLTnhrvksvdpkdwDLFHEVLLTDELSRAGSGGLVwNLI 245
                    6899***************************************99888877666543223445556666559**************9987776777 PP

                    HHHHTTHHHHHHHS-HHHHHHHHHHHHTTS CS
  Acyl-CoA_dh_N  84 vhsslvapailrfGteeqkrryLpklasge 113
                     + ++++p++ rfG+++  +r Lp++++g+
     KKY19502.1 246 GGYGIGCPPLTRFGNPDVVKRVLPDILNGD 275
                    7999***********************996 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0     7e-13   2.1e-09      10     126 ..     409     524 ..     400     526 .. 0.85

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 7e-13
                    HHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  Acyl-CoA_dh_2  10 aAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaavdalfeaa 105
                    + r +++e v++a++r +  +g+kl ++p++ l+la++a +++A    le+ +++ e++ ++++    ++   ++  +a  +++   +++++ +++
     KKY19502.1 409 FSRVCFEECVKYANKRRT--FGKKLIEHPVIRLKLAHMARQIEASYNWLENLIYQCEKMDETEAM--LKLGGAIASLKAQSTTTFEFCAREASQIF 500
                    5678999***********..***********************************7765444444..4666677777999**************** PP

                    GGGGGB...TT-HHHHHHHHHHHH CS
  Acyl-CoA_dh_2 106 Ggsalr...kesplqRlwRDahaa 126
                    Gg ++    +  +++Rl+RD++a 
     KKY19502.1 501 GGLSYSrggQGGKIERLYRDVRAY 524
                    *****73335789********996 PP

>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   6.0   0.00064       1.9     214     265 ..      59     101 ..      52     113 .. 0.44

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00064
                 HSTTS----TTSBE.......SSC--XXXXXXX....XXXXXXXX.....XX CS
       CAP_N 214 yhttGltWnkkGkdaeealkaaaaaasaaaaggpppPpPpPppasvfeeesa 265
                 yh++G+  + kGk        +  +  +++a++ ppPpPp ppa+  ++e+a
  KKY19502.1  59 YHNEGILKKYKGKL-------QIGSLDTKKAAA-PPPPPPAPPAAE-KKETA 101
                 55555555555521.......122222223233.333444444432.22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.49
# Mc/sec: 3416.59
//
Query:       KKY19503.1  [L=1124]
Description: putative 26s proteasome regulatory subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-54  184.2  11.7    2.6e-54  183.5  11.7    1.4  1  RPN2_C    26S proteasome regulatory subunit RPN2 C-terminal d
    2.3e-36  122.4  11.9    7.3e-09   35.6   0.0    8.2  7  PC_rep    Proteasome/cyclosome repeat
    1.3e-19   70.3   0.0    4.6e-14   52.6   0.0    4.7  4  HEAT_2    HEAT repeats
    1.6e-05   25.3   1.0    0.00052   20.5   0.1    4.0  5  HEAT_EZ   HEAT-like repeat
    4.4e-05   23.4   0.1        6.3    7.3   0.0    5.1  4  HEAT      HEAT repeat
     0.0036   17.4   0.0       0.77    9.8   0.0    3.2  2  Cnd1      non-SMC mitotic condensation complex subunit 1
  ------ inclusion threshold ------
       0.06   14.0   0.6        2.4    9.1   0.0    3.8  3  HEAT_PBS  PBS lyase HEAT-like repeat
        1.4    8.1   4.6        2.9    7.1   4.6    1.4  1  MSP1a     Major surface protein 1a (MSP1a)


Domain annotation for each model (and alignments):
>> RPN2_C  26S proteasome regulatory subunit RPN2 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.5  11.7   1.1e-57   2.6e-54       1     160 []     880    1048 ..     880    1048 .. 0.98

  Alignments for each domain:
  == domain 1  score: 183.5 bits;  conditional E-value: 1.1e-57
                  -BEEEEETTTBEE--EEEEES-TTTTSSS-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG............-------------------- CS
      RPN2_C    1 TaiIglnkdLkiPkfefksnakpslFaYPpeleekkekekekvatAvLSttakakarakkkekek...........eeeekeedkmdvdeekeekek 86  
                  T++Ig++++L++P f+f+sn++pslF+Y pe+++k ++++ekv++AvLStta+ak+ra++kek++            ++ +++dkmd+de+  ++e+
  KKY19503.1  880 TSVIGVDQKLEVPVFKFHSNTRPSLFDYVPEQQAKVDEAPEKVKAAVLSTTAQAKRRAQRKEKQQrresmdidqpaPAKPADADKMDTDETAIKDEE 976 
                  9*************************************************************************9988899*********9999999 PP

                  --------------SS----SSEEEEESSSB--TTCCTTEEE-SSSSEEESSS-SSSSEEEEEESSTSSSSSEE CS
      RPN2_C   87 kekekkekekeeekkkkekektfekleNpaRVlpaQlkyisfkkdsrYkpvkkkgtgGivllkdkkpeeeeelv 160 
                  +++ekke eke  kkk ekek+++++eN++RVlp Qlk+++f +d rY+pvk+ +tgG+v++ d+kpee+++++
  KKY19503.1  977 EKTEKKEGEKEPLKKKLEKEKVGYEMENMSRVLPPQLKHLTF-PDPRYEPVKR-PTGGVVVVIDTKPEEARDTI 1048
                  999999999999******************************.**********.***************99886 PP

>> PC_rep  Proteasome/cyclosome repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.2e-06    0.0049       2      30 ..     493     520 ..     492     522 .. 0.93
   2 !    9.3   0.0   0.00073       1.6       1      28 [.     535     561 ..     535     568 .. 0.74
   3 !   15.3   0.6   9.1e-06      0.02       1      34 [.     570     603 ..     570     604 .. 0.94
   4 !   20.5   0.0     2e-07   0.00045       4      34 ..     608     638 ..     605     639 .. 0.94
   5 !    6.8   0.0    0.0044        10       8      34 ..     682     709 ..     682     710 .. 0.86
   6 !   35.6   0.0   3.3e-12   7.3e-09       1      35 []     745     779 ..     745     779 .. 0.97
   7 !   17.3   0.5   2.1e-06    0.0048       1      24 [.     823     845 ..     823     848 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.2e-06
                 HHHHHHHHCTTSTCHHHHHHHHHHHHHHS CS
      PC_rep   2 AllALGlihaGsgneeaislLkpylsdts 30 
                 A++ALG+ih G+ ++ + +lL pyl+++s
  KKY19503.1 493 ATAALGVIHRGNLTD-GQKLLAPYLPKDS 520
                 99*********9999.**********998 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00073
                 HHHHHHHHHCTTSTCHHHHHHHHHHHHH CS
      PC_rep   1 GAllALGlihaGsgneeaislLkpylsd 28 
                 GAl+A Gl++a++    a +l++++ ++
  KKY19503.1 535 GALYAFGLVYANHEGW-AVDLIRDHFKK 561
                 9***********8755.66666666665 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 9.1e-06
                 HHHHHHHHHCTTSTCHHHHHHHHHHHHHHSSHHH CS
      PC_rep   1 GAllALGlihaGsgneeaislLkpylsdtsaevr 34 
                 G +l+LG++++ + +e +++ Lk++l+ +sa  +
  KKY19503.1 570 GGALGLGVAGMATKDEGIYEDLKNVLYADSAING 603
                 789**************************99865 PP

  == domain 4  score: 20.5 bits;  conditional E-value: 2e-07
                 HHHHHHCTTSTCHHHHHHHHHHHHHHSSHHH CS
      PC_rep   4 lALGlihaGsgneeaislLkpylsdtsaevr 34 
                 l++Gli++Gsgn  a++ + +y++dt++e++
  KKY19503.1 608 LSMGLIMLGSGNWKALEDMIQYAHDTQHEKI 638
                 9***************************986 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.0044
                 HHCTTSTCH.HHHHHHHHHHHHHSSHHH CS
      PC_rep   8 lihaGsgne.eaislLkpylsdtsaevr 34 
                 l+++G+g++ ++++lL+  +sd s++vr
  KKY19503.1 682 LAYCGTGSNkAVRKLLHVAVSDVSDDVR 709
                 89*******9999999988888887776 PP

  == domain 6  score: 35.6 bits;  conditional E-value: 3.3e-12
                 HHHHHHHHHCTTSTCHHHHHHHHHHHHHHSSHHHH CS
      PC_rep   1 GAllALGlihaGsgneeaislLkpylsdtsaevra 35 
                 GA++ALG+ +aG+g +ea +lL+p+l+d++++vr+
  KKY19503.1 745 GAAMALGISCAGTGLDEAVELLEPMLKDPTDFVRQ 779
                 9******************************9985 PP

  == domain 7  score: 17.3 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHHCTTSTCHHHHHHHHH CS
      PC_rep   1 GAllALGlihaGsgneeaislLkp 24 
                 G+++ALG+i+aG g++ +isl  +
  KKY19503.1 823 GCAMALGIIDAG-GRNCTISLQTQ 845
                 9***********.******99765 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.018        40       4      57 ..      10      68 ..       7      79 .. 0.81
   2 !    6.2   0.0    0.0058        13      27      81 ..     617     674 ..     605     681 .. 0.78
   3 !   52.6   0.0   2.1e-17   4.6e-14       3      88 .]     695     786 ..     693     786 .. 0.89
   4 ?    0.1   0.0      0.47     1e+03      30      59 ..     798     832 ..     783     842 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.018
      HEAT_2  4 LlqalendpdpevrraairaLg......rignpealpaLvellededpavRraaaeaLga 57
                L+ +l + pdpe++  a+++L       +    +++  +  l ede+   R+ aa  +++
  KKY19503.1 10 LVGFL-SEPDPELKVFALKQLDeqvdllWTEIADSVGEIEALYEDESFPERQLAALVAAK 68
                56678.89**************7666555555699************8888888877665 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0058
      HEAT_2  27 ignpealpaLvelled.edpavRraaaeaLgai..gdpealpaLkellddddddvvRe 81 
                  gn +al+ +++++ d +++ + r  a+ ++ i  g++e ++ L   l+ d+d+  R 
  KKY19503.1 617 SGNWKALEDMIQYAHDtQHEKIVRGLAMGMALImyGLQEEADGLITGLLADPDPTLRY 674
                 58899*********65378998888887666443399999999999999999988885 PP

  == domain 3  score: 52.6 bits;  conditional E-value: 2.1e-17
      HEAT_2   3 aLlqalendpdpevrraairaLg..rignpealpaLvell.ededpavRraaaeaLgai....gdpealpaLkellddddddvvReaAaeaLa 88 
                 +Ll ++++d +++vrr a+++Lg   ++   ++p +vell e+ +p+vR+ aa+aLg      g++ea+++L+ +l+d++ d+vR+ A+ aLa
  KKY19503.1 695 KLLHVAVSDVSDDVRRVAVMSLGfiLFRKYNSVPRMVELLaESYNPHVRYGAAMALGIScagtGLDEAVELLEPMLKDPT-DFVRQGALVALA 786
                 7999999****************888889999******9999***************77665579*********998765.677999998885 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.47
      HEAT_2  30 p...ealpaLvell..ededpavRraaaeaLgaig 59 
                 p   ++++++++++  ++ed+++    a+aLg i+
  KKY19503.1 798 PkvgSIRETMLKVIgnRHEDAMTKFGCAMALGIID 832
                 2455679999999988899*************985 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.1   9.2e+03      22      39 ..     311     328 ..     309     335 .. 0.72
   2 ?   -2.7   0.0       4.2   9.5e+03      31      46 ..     658     674 ..     639     679 .. 0.63
   3 !    7.7   0.0    0.0022         5      30      53 ..     727     751 ..     706     752 .. 0.82
   4 !   20.5   0.1   2.3e-07   0.00052       1      53 [.     740     786 ..     740     788 .. 0.87
   5 ?   -3.1   0.0       5.7   1.3e+04       4      13 ..     821     830 ..     819     836 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.1
     HEAT_EZ  22 lqplvpeilpaLlalLnd 39 
                 ++ + +eil++L+    +
  KKY19503.1 311 QHSMATEILRQLVEKGDS 328
                 678899******965544 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.2
     HEAT_EZ  31 paLl.alLnddsdeVRa 46 
                 + L+  lL d++++ R+
  KKY19503.1 658 DGLItGLLADPDPTLRY 674
                 44442445777777786 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0022
     HEAT_EZ  30 lpaLlalL.nddsdeVRaaAagaLg 53 
                 +p ++ lL ++ +++VR+ Aa aLg
  KKY19503.1 727 VPRMVELLaESYNPHVRYGAAMALG 751
                 677777777***************8 PP

  == domain 4  score: 20.5 bits;  conditional E-value: 2.3e-07
     HEAT_EZ   1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 + vR +Aa+aLG   ++++  l     e++ +L ++L+d+ d VR+ A+ aL+
  KKY19503.1 740 PHVRYGAAMALGI--SCAGTGLD----EAVELLEPMLKDPTDFVRQGALVALA 786
                 579*********5..33566666....************************96 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 5.7
     HEAT_EZ   4 RraAawaLGr 13 
                 ++++a+aLG 
  KKY19503.1 821 KFGCAMALGI 830
                 6899****95 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.81   1.8e+03       5      18 ..     661     674 ..     659     681 .. 0.82
   2 ?    5.3   0.0     0.013        28       9      27 ..     701     719 ..     693     721 .. 0.84
   3 ?    3.2   0.0     0.061   1.4e+02       4      25 ..     729     751 ..     727     755 .. 0.78
   4 !    7.3   0.0    0.0028       6.3       3      25 ..     764     786 ..     762     789 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.81
                 HHHHHT-SSHHHHH CS
        HEAT   5 llkllsDpspeVRe 18 
                 +  ll Dp+p  R+
  KKY19503.1 661 ITGLLADPDPTLRY 674
                 67789*****9997 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.013
                 HT-SSHHHHHHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAakaLgal 27 
                  sD s +VR+ A+ +Lg +
  KKY19503.1 701 VSDVSDDVRRVAVMSLGFI 719
                 499*************966 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.061
                 HHHHHH.T-SSHHHHHHHHHHHH CS
        HEAT   4 lllkll.sDpspeVReaAakaLg 25 
                  +++ll ++ +p+VR+ Aa aLg
  KKY19503.1 729 RMVELLaESYNPHVRYGAAMALG 751
                 556665566699**********9 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0028
                 HHHHHHHT-SSHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLg 25 
                  ll  +l+Dp  +VR+ A+ aL+
  KKY19503.1 764 ELLEPMLKDPTDFVRQGALVALA 786
                 68999*************99986 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.027        59      24      61 ..     695     732 ..     639     739 .. 0.70
   2 !    9.8   0.0   0.00034      0.77       2      55 ..     742     797 ..     741     840 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.027
        Cnd1  24 epLrkrLkDedpyVRktaaivvakLilndmvkekgfls 61 
                 + L+ +++D +  VR+ a++ +  ++ +++  +  +++
  KKY19503.1 695 KLLHVAVSDVSDDVRRVAVMSLGFILFRKYNSVPRMVE 732
                 44666777788888888888777766555555554444 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00034
        Cnd1   2 iRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakL..ilndmvk 55 
                 +R  a ++lg  +  + +++ ve L+  LkD+   VR+ a++++a +   +nd + 
  KKY19503.1 742 VRYGAAMALGISCAGTGLDEAVELLEPMLKDPTDFVRQGALVALAMVlvQQNDAMN 797
                 77788899999999999****************************99654455443 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.2   2.6e+03       9      22 ..     386     410 ..     381     417 .. 0.74
   2 ?   -0.6   0.0       1.4   3.1e+03       1      12 [.     708     719 ..     708     719 .. 0.92
   3 ?    9.1   0.0    0.0011       2.4       1      27 []     742     772 ..     742     772 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.2
                 HHHCTS...........GGGHHHHH CS
    HEAT_PBS   9 Lgqlgd...........eeaipaLl 22 
                 Lg+l+d           +ea +aL+
  KKY19503.1 386 LGELQDsagpdttsplsKEAKEALQ 410
                 9999999999999999955555554 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHC CS
    HEAT_PBS   1 vRraAakaLgql 12 
                 vRr A+ +Lg +
  KKY19503.1 708 VRRVAVMSLGFI 719
                 9*********76 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHCTS....GGGHHHHHHHCTC CS
    HEAT_PBS   1 vRraAakaLgqlgd....eeaipaLleaLqd 27 
                 vR+ Aa aLg   +    +ea+++L   L+d
  KKY19503.1 742 VRYGAAMALGISCAgtglDEAVELLEPMLKD 772
                 9************************999987 PP

>> MSP1a  Major surface protein 1a (MSP1a)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.6    0.0013       2.9     160     231 ..    1034    1103 ..    1030    1114 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0013
       MSP1a  160 avvvatrdessaltvsavPasdqqpdvreavasgGsqedsaqvpttsvPaaessavaPdtivvsvspdsvat 231 
                  +vv+ t+ e +  t++   + ++q+   +a ++ G   +  +vp t vP ++s+a a + ++++v+ d   +
  KKY19503.1 1034 VVVIDTKPEEARDTIELKASRQTQQ--APASTATGAAPQDVNVPQTPVPGTDSGAAAAAGVLTAVDEDEEGA 1103
                  6777777777666666555555555..6788888888899*************************9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1347  (0.0751297); expected 358.6 (0.02)
Passed bias filter:                      663  (0.0369792); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.53
# Mc/sec: 6349.28
//
Query:       KKY19504.1  [L=735]
Description: putative mrna capping nucleoside [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-50  169.8   0.1    9.8e-50  169.3   0.1    1.2  1  mRNA_triPase   mRNA capping enzyme, beta chain
    0.00051   19.4   0.0      0.064   12.5   0.0    2.4  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.091   13.3   0.0       0.19   12.3   0.0    1.5  1  Abhydrolase_6  Alpha/beta hydrolase family
       0.18   10.8   0.0       0.35    9.9   0.0    1.4  1  Lycopene_cycl  Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> mRNA_triPase  mRNA capping enzyme, beta chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.3   0.1   2.2e-53   9.8e-50       2     219 .]      91     326 ..      90     326 .. 0.93

  Alignments for each domain:
  == domain 1  score: 169.3 bits;  conditional E-value: 2.2e-53
                   -HHHHHHHHHHHHHHHH.CTCCGGCCEEEEEEEEEEEETTTSSB---SBSS-EEE-TT....CTEEEEE-B-HHHHHHHHHHHHHHHH..HTTCCCT CS
  mRNA_triPase   2 deitksvsdwiiaaldn.iksekrsqiEiEaklGlivdkstkeRlklpvsteaivenn....adskfesgvdedqfkelnnfLnelsrrneeenskr 93 
                   +++t+ ++d +++ + +  ++ + +++EiE klG i++ +++ Rl++pv te++++++    ++++fes+++  ++k+ln++Ln+  +   +++++r
    KKY19504.1  91 EDLTRFMCDKMFQIIGSaDPPIGGAKFEIEGKLGEIQTHDEQSRLDMPVLTETLIAKDnlrlTRTRFESSMTVGDHKHLNEYLNSCLV-RTQKEPNR 186
                   67899999999988888434556789***************************99887799999*********************997.789999** PP

                   TTEEEEEEEEEEEEEE-S...............-SSS--EEEEEEETTT--EEEEEEEEEEEEEEEE-TTSSSEEEEEEEEEEE-SSS....HHHCT CS
  mRNA_triPase  94 ekvslkeskevDkfYelk...............kkeekskirvskdsenqevlkkieKeriadlniylPnsklDyriSinlElpvses....kakls 171
                   +++++k+++e+D+fY+l+               ++  k ++r+++d  ++ +++ki K riad+++y+P+ k+Dyr+Si++E p+++      +   
    KKY19504.1 187 QIMHYKHTQETDNFYDLSpsgremlpdhirkylNPMFKPRVRITTDLATGMIVAKIIKSRIADFDVYNPRCKFDYRMSISIECPWDGPeshlIMVNE 283
                   ********************************999***************************************************99888888889 PP

                   TS--SEEEEEEEEEEEECCGTEEEEEEEESSS---S--EEEEEEEEEE CS
  mRNA_triPase 172 kktpvseRlkeRlSyihkksgiqfDLtkvektektkkteekyElEiEi 219
                    +++  eR+k+R+Sy+h +  +q+DLt+v   +  + +++++ElEiE+
    KKY19504.1 284 AEGRRGERQKDRMSYRHLA--YQVDLTQV---TYPQTQKKEHELEIEV 326
                   999****************..********...466899999*****97 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0032        14      22      96 ..     434     509 ..     391     522 .. 0.63
   2 !   12.5   0.0   1.4e-05     0.064     183     294 .]     540     656 ..     511     656 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0032
                  HTS-EEEEE.TTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHH.CCCCHCCTCEEEEESCEEEEETEEECTCEE CS
                  xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  22 agakvtlve.legtclnggcllskallgvaedaeiasevvkklnqg.ielllgeevvkidpgkkkvklekkkegdee 96 
                   g+++++++ ++g ++++g +l+++ +++++    + +v+k+l+   ++++ g +v ++dpg+++v ++++ +++++
   KKY19504.1 434 RGVEIIVIDeRDGFFHTVGAPLAHVERSFSASFWKRFNVLKELQRPeVKFIRG-SVQQVDPGSRTVSYTQSGSEEKQ 509
                  45566666556667777777776666666665555559999998877999999.**************876654444 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.4e-05
                  HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCE.......EEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBESSTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 183 kelsaaleealekeGvevklgtsvkeidgngeklevvledgee.......idadlvvvavGvrpstelleeklglelderggivvdeflrtnvpgiya 273
                   e++a + ++l+++Gvev l++++  +  ++ + + v +d++e        +a+ v  ++G+ p  +l  e+  ++++++  +  +  +     + +a
   KKY19504.1 540 AEFKAKALQYLQEQGVEVILNQRPSVFPLDNGRSKIVFGDNTEmrpgyvfTAASKVYPSTGYLPAAALD-EHGYVKITSNLSLSYNLPSPKAPLHDFA 636
                  789999******************877777778889999999988999888888888899999998886.88888988888888888775555566** PP

                  -GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 274 iGDvaggkggpelaqaAvqqG 294
                  +GD+a   +g+++a aA++++
   KKY19504.1 637 VGDIA-SWSGIRRAGAAMAMA 656
                  *****.9999**999999986 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.2e-05      0.19      47     121 ..     373     457 ..     341     552 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.2e-05
                    HHHCHHH.HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC..EEEEES-........----TTT..........S----TTHHHHHHTT-C CS
  Abhydrolase_6  47 ledladl.aalldelaagggpvvlvGHSlGGalalaaaplalvvgvlldppp......talpagl..........laaalelllallallrl 121
                    ++d a l +++ + +++g+++v++ G S+GG+ al+   ++l    l+d+ p      ta+p+g           ++ +  ++++++a+l++
     KKY19504.1 373 VTD-AGLpVEIQENEKTGAHKVIIAGCSYGGITALL---SLL---SLIDGEPvknttaTAVPTGTrtirgveiivIDERDGFFHTVGAPLAH 457
                    333.44477888888889**************9999...887...88888666766554555555555555556555555555555555444 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   7.7e-05      0.35     217     284 ..     542     611 ..     536     636 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 7.7e-05
  Lycopene_cycl 217 lkkrlaaylralglkvkevveeEqgviPvtlggslprleqk....vlaiGaaaglvhPaTGYsvarslaeap 284
                    +k++  +yl+++g++v  + ++  +v P+ +g+s   +  +    +  + +aa+ v P+TGY  a++l e  
     KKY19504.1 542 FKAKALQYLQEQGVEV--ILNQRPSVFPLDNGRSKIVFGDNtemrPGYVFTAASKVYPSTGYLPAAALDEHG 611
                    5777788999999876..99999******9999887776665222455559************999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (735 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:00.58
# Mc/sec: 3818.17
//
Query:       KKY19505.1  [L=265]
Description: hypothetical protein UCRPC4_g04488 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.51
# Mc/sec: 1550.89
//
Query:       KKY19506.1  [L=317]
Description: putative thiamin pyrophosphokinase-related protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-13   49.4   0.0    7.2e-13   48.6   0.0    1.4  1  DUF4743   Domain of unknown function (DUF4743)
    6.1e-12   45.7   0.0    1.2e-11   44.8   0.0    1.4  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> DUF4743  Domain of unknown function (DUF4743)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   8.1e-17   7.2e-13      12     119 ..      24     131 ..       4     133 .. 0.87

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 8.1e-17
                 ..--GCCEEEEEETT..EEEEEEEHHHHHHHCT-TTTEEE-SS..EEEE-TT--SHHHHHHHHHHHHHHHHHTT...SS----S-EEEE-SSTTS---E CS
     DUF4743  12 agssrseflpFvveg..qqvGlirpdvaeklrkfpdvFevseke.aveLapslktyeeRtaaveevleelreegsfvalkgwRdElYeVrasfsdppll 107
                  + + +e+ +F +eg   ++G++ p+ ++++ ++pd +++++++  ++La+  +++++R++a e+ + + re+g+f++lkgw +E+Y++    +  ++l
  KKY19506.1  24 YQAETAELYNFRIEGvpSNLGYVLPSTVQAI-QWPDHWTLDNESkTITLAAG-SSMDDRSKAFESTMLAEREKGTFKLLKGWGNERYPIYGPDG-SVVL 119
                 5667889999****95458*********998.5*******998878999876.59**********************************99876.8999 PP

                 EEEGGGTGGGT- CS
     DUF4743 108 kleRaaaplfGv 119
                 ++eRa ++lfG+
  KKY19506.1 120 SVERATSALFGI 131
                 ***********9 PP

>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   1.3e-15   1.2e-11      16     120 ..     149     268 ..     134     278 .. 0.77

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 1.3e-15
                 EEEEEEES..SSSTTT.EE.SSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEE.........EEEEEEEEEEEECSGCSST.S CS
       NUDIX  16 evLlvrrs..kkpfpg.We.lPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygd.........eheilyvfleevegelepn.d 100
                 +v++ rrs  k +  g  +  +gG +  gE p e+++RE+eEE+ ++ +l++  ++ +   +y  + ++         + e+ yv++ +v ++ ep+ +
  KKY19506.1 149 KVWVSRRSrsKLTYGGkLDsCVGGSITTGEFPFECLVREAEEEASFPSQLVQSKAKSTGAVTYFYIRDEraggevgmmQPECQYVYEIDVGDDFEPRpN 247
                 3999999976555555665599********666************988999666666666666655555677799999*********999999999999 PP

                 TTTEEEEEEEEHHHH.HHHHT CS
       NUDIX 101 enevsevrwvpleel.lkekl 120
                 +nev+e+++++++el +  + 
  KKY19506.1 248 DNEVEEFKLMTIDELrASLAN 268
                 ***************422222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2182.06
//
Query:       KKY19507.1  [L=687]
Description: putative MICOS complex subunit mic60 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.5e-150  501.5  29.6   1.3e-122  410.8  24.9    2.1  2  Mitofilin  Mitochondrial inner membrane protein
  ------ inclusion threshold ------
       0.17   12.2   4.6       0.17   12.2   0.3    2.6  2  DUF3135    Protein of unknown function (DUF3135)
        0.2   11.6   4.9      0.071   13.1   0.8    2.1  2  Focal_AT   Focal adhesion targeting region
       0.63   10.5   5.6       0.22   12.0   0.5    2.7  2  HsbA       Hydrophobic surface binding protein A


Domain annotation for each model (and alignments):
>> Mitofilin  Mitochondrial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   0.2   4.2e-30   1.9e-26       2     169 ..     137     304 ..     136     320 .. 0.92
   2 !  410.8  24.9  2.9e-126  1.3e-122     249     617 ..     321     683 ..     318     687 .] 0.99

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 4.2e-30
   Mitofilin   2 sgfgkvlvalvlivgvgvGGvvlyakkddeFrdfleksvPyseevvdylleedpplaeklkeisklqvsavsevtkeskepkeekkkeksekqssasse 100
                 +++ ++l++l+ ++g+++GG+v+ya+ +d+F+df+++ +P++eevv+y++e++         +s+++++a   + k +++p++e k ++++++s++s++
  KKY19507.1 137 RRGLRFLTYLLFTGGLVYGGGVWYALRSDNFHDFFTEFIPFGEEVVLYFEERS---------FSQRFPHAQHHARKLDARPRDESKAVTIPSRSGQSWR 226
                 67889************************************************.........************************************* PP

   Mitofilin 101 vaeeeaeatkkaaeaka.........qqpkseqekekaleevlkealskaekataaakeakdeakkavkeavdklkea 169
                 v++ee  + +++++  +         +q ++ ++ ++a e  +++a+++a  at  ++++++++ ++ ++++  + ++
  KKY19507.1 227 VKDEEGLGADVSQKGPHmsalgtgktEQKNAQKQPSQATEPEKTKAVEQAKAATGSTTPSTEKSLRPATKEAPAAASP 304
                 *************************9999999999999999********************99999888877665443 PP

  == domain 2  score: 410.8 bits;  conditional E-value: 2.9e-126
   Mitofilin 249 vekykelveeerevFqqelesiipeiitnlkednkklskddlnsliahAkteidqlskelaelkkeeekkieralekqkeelekqeealsarleeerak 347
                 ++++++ ++ee++v  qel+++++++it++++dn  + + +++++i++Ak+ ++ +++++ +lkk++e+++++++e++++e+e+ ++ l+++++ +ra+
  KKY19507.1 321 ISPLSVASAEEPIV--QELVKTVNDLITVINADNG-AAANKYSQPIEKAKESLSSVGAKIVALKKAAEEDAKSKIEEAHKEFEERARNLISQIDVARAE 416
                 56788999******..*******************.9************************************************************** PP

   Mitofilin 348 eerqlrlelereleeireeyeekLrteLerqaeaheehLkdvlveqeieLkrefqqeikekveeEragrllkLaellaklkglekaleshaeaedenrk 446
                 e + +r+++e+++e+++++y ek++ e +r ae +e +Lk++l  q+ieLkr+f  ei + ve+Er+grl+kL+ l +++ +l ++++ ++ ++d+n++
  KKY19507.1 417 ETAAFREQFEQAREQLAQAYHEKVKLEVQRSAELAEAKLKNELMDQAIELKRKFSSEIHNLVEKERDGRLSKLSDLSSNVTKLQELTSNWNGVIDTNLS 515
                 *************************************************************************************************** PP

   Mitofilin 447 aqqLwlAveaLrstlksasadk.rtrPlkdelkalkelasdDevvkavlaslpeealqrGvyseaaLrerFrkVakevRkvalvdpegagllshalSyl 544
                 +q+L++Av+a+rstl++as  + r+rP+++el+alke+a++D+vv+a++as+++ a+qrG +s  +L +rFr+Va+evRk+al+ pe+ag++sha+S+l
  KKY19507.1 516 TQKLQVAVDAVRSTLERASLVEgRPRPFVRELAALKEVANGDPVVDAAIASINPLAYQRGLPSSHQLVDRFRRVASEVRKAALL-PEDAGVASHAASFL 613
                 *******************9889*************************************************************.************** PP

   Mitofilin 545 lSkllfkpkqgeldvagdDvesiLaRAeyyLeegdLdkAaremnsLkGwskklasDWLkeaRkvlevqqalel 617
                  Sk++fk k+g++  +g+DvesiL+R+e++Leeg+Ld Aaremn L+Gw+k+l++DWL+e+R+vlevqqa+e+
  KKY19507.1 614 ISKVMFK-KEGLA--EGNDVESILTRTETLLEEGNLDAAAREMNGLQGWAKTLSKDWLGEVRRVLEVQQAMEV 683
                 *******.99999..********************************************************98 PP

>> DUF3135  Protein of unknown function (DUF3135)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   3.7e-05      0.17      18      55 ..     379     416 ..     378     422 .. 0.90
   2 ?    0.5   0.3      0.17   7.5e+02      17      40 ..     423     446 ..     422     454 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.7e-05
     DUF3135  18 alealrqelieelIesapeemqrrLrglqfqiDmqlsr 55 
                 al+++ +e  ++ Ie+a++e+ +r r l +qiD+ ++ 
  KKY19507.1 379 ALKKAAEEDAKSKIEEAHKEFEERARNLISQIDVARAE 416
                 5778888999999*********************9976 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.17
     DUF3135  17 ealealrqelieelIesapeemqr 40 
                 e++e++r++l ++  e+++ e qr
  KKY19507.1 423 EQFEQAREQLAQAYHEKVKLEVQR 446
                 79*********9999988888876 PP

>> Focal_AT  Focal adhesion targeting region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.8   1.6e-05     0.071      13     104 ..     335     426 ..     328     440 .. 0.81
   2 ?   -0.7   0.2      0.28   1.3e+03      51      85 ..     459     493 ..     434     527 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.6e-05
    Focal_AT  13 eatlsvvkavvelsqevetakaeeyvslvksvglelrkLltsvdellsslpasarreielaekvlskdlaelisamklaqqyssttldeeyr 104
                 ++ ++ v+ ++++ +  + a a++y + + +   +l +  +++  l +  +++a+  ie a+k  ++  ++lis++  a+ +++ +  e++ 
  KKY19507.1 335 QELVKTVNDLITVINADNGAAANKYSQPIEKAKESLSSVGAKIVALKKAAEEDAKSKIEEAHKEFEERARNLISQIDVARAEETAAFREQFE 426
                 4445555555666666778999*******************************************************999998887666553 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.28
    Focal_AT  51 Lltsvdellsslpasarreielaekvlskdlaeli 85 
                 L+ +  el  +++++ ++ +e ++    + l++l+
  KKY19507.1 459 LMDQAIELKRKFSSEIHNLVEKERDGRLSKLSDLS 493
                 33333333333333333333333333333333333 PP

>> HsbA  Hydrophobic surface binding protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.5      0.39   1.8e+03      43      43 ..     368     368 ..     332     477 .. 0.63
   2 ?   12.0   0.5   4.8e-05      0.22       6      48 ..     487     533 ..     486     536 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.39
                 H CS
        HsbA  43 s 43 
                  
  KKY19507.1 368 E 368
                 2 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 4.8e-05
                 HHHHHHHHHHHHHHHHHHH--S...H...HHHHHHHHHHHHHHHHHH CS
        HsbA   6 sdittistavtaldtavnafnG...g.asalpilsasnalvsaikka 48 
                 s ++++s++vt+l++  +++nG   + +s ++++ a++a+ s+++ a
  KKY19507.1 487 SKLSDLSSNVTKLQELTSNWNGvidTnLSTQKLQVAVDAVRSTLERA 533
                 6799********************97899**************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1762  (0.0982765); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.50
# Mc/sec: 4127.75
//
Query:       KKY19508.1  [L=218]
Description: putative rab gtpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-59  199.8   0.3    2.4e-59  199.6   0.3    1.0  1  Ras          Ras family
    2.1e-36  124.7   0.3    3.5e-36  124.1   0.1    1.4  2  Roc          Ras of Complex, Roc, domain of DAPkinase
    1.3e-14   54.0   0.0    1.6e-14   53.7   0.0    1.0  1  Arf          ADP-ribosylation factor family
    1.3e-07   31.4   0.1    1.8e-07   30.9   0.1    1.3  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    3.3e-07   29.9   0.0      4e-07   29.6   0.0    1.1  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
    1.3e-06   28.5   0.0      2e-06   27.9   0.0    1.3  1  MMR_HSR1     50S ribosome-binding GTPase
    2.2e-05   24.4   1.4       0.12   12.3   0.2    2.4  3  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
       0.01   16.2   0.1      0.018   15.4   0.1    1.6  1  AAA_16       AAA ATPase domain
      0.059   13.6   0.0        2.2    8.5   0.0    2.3  2  AAA_22       AAA domain
       0.19   12.6   1.1        1.2   10.1   1.1    2.0  1  DUF2624      Protein of unknown function (DUF2624)


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.6   0.3   1.3e-62   2.4e-59       1     160 [.      19     183 ..      19     185 .. 0.98

  Alignments for each domain:
  == domain 1  score: 199.6 bits;  conditional E-value: 1.3e-62
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEET.TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievd.gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeik 98 
                 Klvl+G+savGK+sl+lrfvkd+F++  esTig++f+t++i++d +++vk+eiwDTAGqe++ksl+++yyr+a+++++vydit+++s++++k+wv+e++
  KKY19508.1  19 KLVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTISLDeSTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKSWVKELQ 117
                 99*****************************************97789*************************************************** PP

                 HHSTTTSEEEEEEETTTGGG....G-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras  99 rvaeenvpivLvGnKvDlee....kravsteegeelakelglkfletSAktnenveeafeellrei 160
                 r+a+en++i+L GnKvD+ +    kra++t+++e++a+e gl f+etSAkt++nv+e+f+++++++
  KKY19508.1 118 RQANENIVIALAGNKVDMVNenpdKRAIQTADAEAYAREAGLLFFETSAKTATNVRELFTAIAKKL 183
                 ******************999999**************************************9986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.1   0.1   1.9e-39   3.5e-36       1     120 []      19     135 ..      19     135 .. 0.88
   2 ?   -3.3   0.0       5.5   9.9e+03      75      98 ..     152     175 ..     147     182 .. 0.60

  Alignments for each domain:
  == domain 1  score: 124.1 bits;  conditional E-value: 1.9e-39
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHH...HCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrss...enlk 96 
                 K+vl+G+s+vGK+sl+ rfv+d+f++ ++stig+ flt+++ ++++       ++vk++iWDtaGqer++sl+p+y+r+a++a++vyd ++    +++k
  KKY19508.1  19 KLVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTI-SLDE------STTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAaslDKAK 110
                 99************************************987.3333......45799*******************************55441236889 PP

                 HHHHHHHHHCSSS-EE.EEEE-TTT CS
         Roc  97 eWlkelkkvagkspvi.lvgnkiDl 120
                 +W+kel+++a++++vi l gnk+D+
  KKY19508.1 111 SWVKELQRQANENIVIaLAGNKVDM 135
                 9********99887764899***96 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5.5
                 HHHCTSCEEEEEEEGHHHHCHHHH CS
         Roc  75 lylreaalailvydsrssenlkeW 98 
                  y rea l+++ + +++ +n++e 
  KKY19508.1 152 AYAREAGLLFFETSAKTATNVREL 175
                 566666666555556666666554 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   9.1e-18   1.6e-14      13     173 ..      16     181 ..      11     183 .. 0.86

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 9.1e-18
                 TEEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEE...TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHH CS
         Arf  13 kelrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei...knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLk 105
                  +++++llG  + GK+ ++ ++ ++++++    Tig  f +++++     ++kf++wD  Gqe+ ++l   Y+++ +  + v D ++   l++ak+ +k
  KKY19508.1  16 AQFKLVLLGESAVGKSSLVLRFVKDQFDDyRESTIGaaFLTQTISLdesTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKSWVK 114
                 5799*********************99985678888334566666566689**********************************************99 PP

                 HHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHHH CS
         Arf 106 alleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlse 173
                 +l +++ ++++++ + +NK D+ +   ++   ++ + e    +  l  +++sa + +++ e ++ +++
  KKY19508.1 115 EL-QRQANENIVIALAGNKVDMVNENPDKRAIQTADAEAYAREAGLLFFETSAKTATNVRELFTAIAK 181
                 97.677889999999*******9998877776666666666699999999999999999999988876 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.1   9.8e-11   1.8e-07      53     193 ..      51     184 ..      20     185 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 9.8e-11
                 TSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.....STHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHH CS
    GTP_EFTU  53 giTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG.....vepqteevlrlalkegvpiivfiNKmDrlkaelkeiveev 146
                 g    +++isl+ e+++ ++ + Dt G + + +     +r +++av+v d+++       ++  +e+ r+a+ e++ i ++ NK+D+++++ ++ + + 
  KKY19508.1  51 GAAFLTQTISLD-ESTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAasldkAKSWVKELQRQAN-ENIVIALAGNKVDMVNENPDKRAIQT 147
                 334445566666.999************************************88444435555555555554.556677788******99999877776 PP

                 HHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 147 kqklsrkeeklekygekgekevpvvfgSalkgegvktllealvellp 193
                  +         e+y+ ++     ++ +Sa+++ +v++l+ a+ ++lp
  KKY19508.1 148 ADA--------EAYAREA--GLLFFETSAKTATNVRELFTAIAKKLP 184
                 633........3454443..5899******************99887 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   2.2e-10     4e-07       1     144 [.      19     156 ..      19     181 .. 0.67

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 2.2e-10
   Gtr1_RagA   1 kvLLmGksgsGKtsmr.sii...Fdnylard..tlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesrelee 93 
                 k++L+G+s  GK+s+  + +   Fd y      + +l++ti++++s+      +++++wD  Gqe++   +        +rn +  + V D++      
  KKY19508.1  19 KLVLLGESAVGKSSLVlRFVkdqFDDYRESTigAAFLTQTISLDESTT-----VKFEIWDTAGQERYKSLA-----PMYYRNANCAVVVYDIT---QAA 104
                 899***********8623332336666544311456666666666665.....9***********997775.....44455555555556999...456 PP

   Gtr1_RagA  94 dletlkeileal.rqyspeakvfvlihKmDliqedereeifeerkeeireei 144
                 +l++ k+ +++l rq ++++ +    +K+D+++e+  ++++++  +e   + 
  KKY19508.1 105 SLDKAKSWVKELqRQANENIVIALAGNKVDMVNENPDKRAIQTADAEAYARE 156
                 67777777777724678888888888*******9887777766655544433 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.1e-09     2e-06       2     111 ..      20     127 ..      19     132 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.1e-09
                 EEEEESTTSSHHHHHHHHHTS.....TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.....kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkplde 95 
                  +++G + vGKS+L+ + +++     +  +   ++ T++i   + +    ++e++Dt+G  e   + k+l+  + ++ ++ ++++ +    ++l++ ++
  KKY19508.1  20 LVLLGESAVGKSSLVLRFVKDqfddyRESTIGAAFLTQTISLDEST--TVKFEIWDTAG-QE---RYKSLAPMYYRNANCAVVVYDITQ-AASLDKAKS 111
                 6899***************954444556667778899999888877..679********.54...555888888876666666665553.346888888 PP

                 HHHHHHHHTTSEEEEE CS
    MMR_HSR1  96 eleelleeakkplilv 111
                  ++el+++a+++++++
  KKY19508.1 112 WVKELQRQANENIVIA 127
                 8888887777777665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00022       0.4     102     121 ..      20      39 ..      14      53 .. 0.83
   2 ?    0.9   0.0      0.21   3.8e+02      56      99 ..      72     115 ..      45     120 .. 0.73
   3 !   12.3   0.2   6.4e-05      0.12       6     100 ..      81     182 ..      76     185 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00022
                  EEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallp 121
                   vl+G+S vGKS+L+ +++ 
   KKY19508.1  20 LVLLGESAVGKSSLVLRFVK 39 
                  69************977665 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.21
                  GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  56 iDlleeeeeleelkeelealgyevllvsaktkegleelkellkd 99 
                   D + +e+  +     +++++++v++ + ++ ++l++ k+++k+
   KKY19508.1  72 WDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKSWVKE 115
                  55555555333334568999999999999999999999998876 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 6.4e-05
                  -EETTTTEES--EEEEEEESTTTT--HHHHH...HHHHHHHHTT-EEEEEEE-GGG--HHH.....HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHH CS
  RsgA_GTPase   6 nelvrpkvaNvdqllivvslkepelslnlld...rfLvlaeekgiepvivlnKiDlleeee.....eleelkeelealgyevllvsaktkegleelke 95 
                  ++l      N + +++v  ++ +  sl+  +   + L    +++i + ++ nK+D+++e+      ++ + ++  +++g+ ++ +sakt ++++el +
   KKY19508.1  81 KSLAPMYYRNANCAVVVYDIT-QAASLDKAKswvKELQRQANENIVIALAGNKVDMVNENPdkraiQTADAEAYAREAGLLFFETSAKTATNVRELFT 177
                  555555566777777777777.44444443311155666677788888888*******9998887777777888999*******************99 PP

                  HCTTS CS
  RsgA_GTPase  96 llkdk 100
                  ++++k
   KKY19508.1 178 AIAKK 182
                  99876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.1     1e-05     0.018      27     107 ..      20     100 ..      10     190 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1e-05
      AAA_16  27 vllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala..................a 107
                 ++l Ges+vGKsslv ++ +            ++d+++++    ++  a+ + +     lde+++ ++e w+++ +e+++                  +
  KKY19508.1  20 LVLLGESAVGKSSLVLRFVK-----------DQFDDYRES----TIGAAFLT-QT--ISLDESTTVKFEIWDTAGQERYKslapmyyrnancavvvydI 100
                 5799***********55554...........455555222....23333322.22..233444555666666666666664444444444444444442 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0012       2.2       8      42 ..      20      66 ..      17     136 .. 0.74
   2 ?    3.3   0.0     0.051        92      37      70 ..     148     189 ..     109     200 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0012
      AAA_22  8 lvvtGesGtGKTtl.lrrlleqldeeakaee...........erpev 42
                lv+ Ges +GK+ l lr +++q+d + + +             ++++
  KKY19508.1 20 LVLLGESAVGKSSLvLRFVKDQFDDYRESTIgaafltqtislDESTT 66
                6899*******876156667777766555556555555555544444 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.051
      AAA_22  37 e......erpevvfvtlpsst..sskdllrellralglelka 70 
                        ++++++f++ +++t  + ++l+++++++l l++ +
  KKY19508.1 148 AdaeayaREAGLLFFETSAKTatNVRELFTAIAKKLPLDQGG 189
                 24555667888899999999988***********99987776 PP

>> DUF2624  Protein of unknown function (DUF2624)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.1   0.00068       1.2      14      65 ..      99     150 ..      95     180 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00068
     DUF2624  14 siTaeellkyakqygveltksqAekivkilrekkidifnkeerkkllkelak 65 
                  iT+   l  ak    el ++  e+iv  l ++k+d+ n++  k+ ++   +
  KKY19508.1  99 DITQAASLDKAKSWVKELQRQANENIVIALAGNKVDMVNENPDKRAIQTADA 150
                 68888889999999999999999**********************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.55u 0.32s 00:00:00.87 Elapsed: 00:00:00.52
# Mc/sec: 1249.64
//
Query:       KKY19509.1  [L=702]
Description: putative phosphoinositide phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-89  299.1   0.0      5e-89  298.8   0.0    1.1  1  Syja_N         SacI homology domain
  ------ inclusion threshold ------
      0.088   12.7   6.1       0.14   12.0   6.1    1.2  1  7TMR-DISM_7TM  7TM diverse intracellular signalling


Domain annotation for each model (and alignments):
>> Syja_N  SacI homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.8   0.0   5.6e-93     5e-89       2     320 .]      59     400 ..      58     400 .. 0.92

  Alignments for each domain:
  == domain 1  score: 298.8 bits;  conditional E-value: 5.6e-93
      Syja_N   2 gilGlirllsgsyllvitkreevgtlkgkkeiykitevellplsseeeaekalkslkaktekkkeekeleekllklleklfessgsfYFsydlDltrsl 100
                 gilG+i+l+ ++y++vitk++ +g+++g+ + yki ++e+lpl++       +            ++ +e+++l+ll k++ ++  +YFsy++Dlt+s+
  KKY19509.1  59 GILGIIKLKLDKYVIVITKAQPMGRIRGH-MAYKILATEFLPLRER-----PV------------HDPDEDTFLALL-KILLKTAPMYFSYSFDLTNSF 138
                 9********99***************887.88**********9433.....22............2345999**999.89999**************** PP

      Syja_N 101 qrqlekssesskslplweraderFvWNrhllkpli..........eaeldswllpviqGfveqsklklsksqkekekkevtltlisRrsrkraGtRylr 189
                 qrq+e    s+ s+plw+rad+rF+WNr+ +++li          ++++d ++lpvi+G+++   ++        + + +t++li+R+sr+r+GtRy++
  KKY19509.1 139 QRQSE----SDLSQPLWKRADDRFLWNRFAQSDLIdfrnggrigpQTGADAYILPVISGVLRIVPTS-------IKANPFTFVLITRKSRHRTGTRYFS 226
                 ***97....578899******************998877776666669************9533332.......34577******************** PP

      Syja_N 190 RGiddeGnvANfvEtEqileves.....................sekeskilSfvqiRGSiPlfWsqeptlkykpkirierseeenleafkkHfekllk 267
                 RGid++G+v+N+ EtEqi++ ++                     s+k+ +ilSfvq+RGS+P++W ++++l+y+pk++i r  +++ +a+k+Hf+++++
  KKY19509.1 227 RGIDEQGHVSNYNETEQIVLLNDdggqpagfaggnafqngpsggSSKDLQILSFVQTRGSVPVYWAEINNLRYTPKLQI-RGVDTAIDAAKRHFNEQIR 324
                 ********************7778********************88899******************************.599**************** PP

      Syja_N 268 rYgkvvvvnLlekkgrEkkLgeayekavkklnk.le......................kekkklkyveFDfhkeck 320
                  Yg+ ++vnL++kkgrE+k+++aye++v++l + ++                      ++ ++l+y++FDfh+e+k
  KKY19509.1 325 IYGENYLVNLVNKKGREEKVKRAYEDMVRALISsTKevttadqitsekthviqpeerdQKLDRLHYIYFDFHSETK 400
                 *******************************985559********************98889***********987 PP

>> 7TMR-DISM_7TM  7TM diverse intracellular signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   6.1   1.6e-05      0.14      38     117 ..     558     636 ..     556     646 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.6e-05
  7TMR-DISM_7TM  38 llsfllyllslngllfqylwpnappalnnkllyltlllllilfll.Farsflelkkkprllklllllavllsllllllpll 117
                     ++++ yl s +g +  +++ +  p l++ + y++ + ++++f+  F+rs+   +   + +k++ll+++++++ +++++  
     KKY19509.1 558 DIFLGAYLPSTSGVGSSLIFADRRPLLVQSVPYVLAASVFLIFVSlFTRSVPGSST--WAMKFFLLVWFAIGCWAISFIYR 636
                    58999*********************************99999999****965522..************99999996654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 4570.39
//
Query:       KKY19510.1  [L=763]
Description: putative tissue alpha-l-fucosidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-79  268.0   3.3    2.2e-79  267.5   3.3    1.2  1  Alpha_L_fucos  Alpha-L-fucosidase


Domain annotation for each model (and alignments):
>> Alpha_L_fucos  Alpha-L-fucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.5   3.3   1.2e-83   2.2e-79      12     350 .]     308     662 ..     299     662 .. 0.88

  Alignments for each domain:
  == domain 1  score: 267.5 bits;  conditional E-value: 1.2e-83
                    -SSS-SSSSS--SHHHHHHHHH-EEEEE--SGGGTTT..T......-GGGHHHHTT--HH.................HHHGGGGG---TT--HHHH CS
  Alpha_L_fucos  12 ekyeptwesldkrklpewFrdaKfGifiHWGlysvpaage......aseWyarnmkeekek..kvvkfhkkkYgeefeYkdlakeFkaekFdpeew 99 
                    ++yept +s+ +++ p+wF+ aK GifiHWGl+s+pa g       ++eWy++n+++  ++  ++++fh ++Yg+++ Y+d + +F+ae ++p+ew
     KKY19510.1 308 TNYEPTYDSIYAHESPSWFSGAKYGIFIHWGLFSIPAWGNsgsnetYAEWYWWNLNQGPDTsdQTYEFHIEHYGPNYVYDDCIANFSAEAYNPKEW 403
                    57***********************************666***************99866678********************************* PP

                    HHHHHHHT-SEEEEEEE-TT--BSS-..-TT-S-BGGG.ST-S-HHHHHHHHHHH..TT-EEEEEEESS-TT-TT--SS--SHHHHHHHH...... CS
  Alpha_L_fucos 100 aklfkaaGakYvvltakHHdgfalwd..skvsdwnsvdagPkrDivkelakavrk..eglkfglyysladwknpdyyedkkkeedrktekkek... 188
                    ++lf +aGa Y+v+++kHHdg+al+d  s+v++ +sv  +P+r+++kel++a+ +    l+  +yysl++w++pdy++    +    + +  +   
     KKY19510.1 404 VDLFAEAGANYIVPVTKHHDGYALFDvsSNVTKRTSVALHPHRNLIKELFDAASHyqPHLHRATYYSLPEWFHPDYQPYGFGRWPGGNAT--Npft 497
                    *************************87789999********************9844569999************999776665433333..2358 PP

                    .............HH.HHHHHHHHHHHHHHSTTEEEEEES--SHH.HHTTHHHHHHH..HHHHHHHSTT..-EEBGGG-B-TTSSBBEEBSS---T CS
  Alpha_L_fucos 189 ..........kskky.kektlnqlkelvtkYkpdilwfDgewekkeeyynedwkseeelaklykelspgdevlvndrlgkkeaedyqtperglpke 273
                              + ++y ++ +l+++  l  + + +++w+D++  +       + +      ++   +s+g++v++n+r+g     d++tpe+ + + 
     KKY19510.1 498 ngslpytgyvPVSDYvQDLALPEMFTL-ASMGSELMWCDIGGPN------MTAELASS--WYNIAASQGRQVAMNSRCGL--PGDFDTPEYATYSA 582
                    899*******99999788888888877.56799******99888......22233332..3333334557899***7754..448*********** PP

                    -GGG-EEEEE-SB.S--S--S-G..S-B--HHHHHHHHHHHHHTTEEEEEEE---TTSS--HHHHHHHHHHHHHHHHHGG CS
  Alpha_L_fucos 274 lkakpWetcttig.ksWgYkrne..eeyksakeliklLvdivskgGnlLLnigptadGsipeeeeerLkeiGkWlkvnge 350
                    +++++We   +++  s+gY+r +  + y+++++++++Lvdivsk+Gn+LL+igpt++Gsi ++e + L+e G+W+k +ge
     KKY19510.1 583 TQQRKWEASSGMDpYSYGYNRATarSGYMNSSTIVTTLVDIVSKNGNFLLDIGPTGNGSILDIEAQHLREAGTWIKSHGE 662
                    **********************999*****************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (763 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.49
# Mc/sec: 4701.23
//
Query:       KKY19511.1  [L=566]
Description: hypothetical protein UCRPC4_g04494 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-57  196.2   0.7    6.9e-56  190.2   0.7    2.1  1  Glyco_hydro_35  Glycosyl hydrolases family 35
      7e-05   23.4   0.2     0.0035   17.9   0.0    2.9  3  BetaGal_dom4_5  Beta-galactosidase jelly roll domain
  ------ inclusion threshold ------
      0.011   15.1   0.0       0.17   11.2   0.1    2.0  2  Glyco_hydro_42  Beta-galactosidase


Domain annotation for each model (and alignments):
>> Glyco_hydro_35  Glycosyl hydrolases family 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.2   0.7   1.1e-59   6.9e-56      36     315 ..       1     274 [.       1     275 [. 0.89

  Alignments for each domain:
  == domain 1  score: 190.2 bits;  conditional E-value: 1.1e-59
                     CT-SEEEEE--HHHH-SCTTB---S.GGG-CHHHHHHHHHCT-EEEEEEES---TTBGGGG--GGGGGSTTS-TTSS-HHHHHHCHHHHHHHHHH CS
  Glyco_hydro_35  36 lGlnaietYveWnlhepkegkydfe.GaldlekFlklaqeagLyvilRpGpYicaEwdaGGlpaWllkkkeiklRssdeafleavekyleailkk 129
                     +Gln+i  Y++Wn  ep++g+   +  ++d+++++++aqe+gLyv+lRpGpYic+E + GG+p+Wl++k           ++e++        + 
      KKY19511.1   1 MGLNTIFSYIFWNNLEPEQGTWLSDkPENDIARYFQIAQEEGLYVVLRPGPYICGEHEWGGFPVWLTAK----------GYIENLAG-----SSG 80 
                     7********************665549*****************************************9..........45555543.....467 PP

                     HHHCBGGGTSSEEEEEESSSGGGT---HHHHHHHHHHHCCCT-SSCBEEECESTTTCCCTTSSTTT.SCEEEEEECTTS.THHHHHHHHHH-TTS CS
  Glyco_hydro_35 130 vkkllltnGGpiilvQvEneYgskavdkaylralakalkeklaekallftadvpseevaekgtlpeedilatvgfgsdakakeafkllkefspek 224
                     +++l++++GGpi++vQvEneYgs +++++y++al++ l+e+ + ++ +++ +v +  ++e+g++p+  +la v+ gs a a +  +     s+  
      KKY19511.1  81 LADLQVSRGGPILMVQVENEYGSFGENHNYTAALRDILRENFEVPLYTNDGGVDW--TLEGGEIPG--VLAEVDGGSWALA-ARDEYITDPSELG 170
                     899***************************************9988888877777..69999****..7777777766553.2345556777788 PP

                     --EEEEEESS---BTTS--HHHHHHHCCHHHHHHHCCC........SEEEEEECE--B-GCC-B-CCTT.......SB--TT-SB-TTS---HHH CS
  Glyco_hydro_35 225 Plvvsefwtgwfdewgekkaarsaeelaeevervlakn.......issvnlYMihGGTnfGflaganflg......tsYdydApldEagnltpky 306
                     Pl+  e++t + d+wg  + ++++ +  +ev+++l++         +s+++YM+hGGTnfGf +ga  ++      +sYdy++pldE+g++t+ y
      KKY19511.1 171 PLLDGEYYTLAPDQWGPYNPHNTTADDPDEVATILSDIeyhlgnvSASISFYMVHGGTNFGFQNGALWQNrttvftSSYDYGSPLDETGRTTDLY 265
                     *****************999999999999999999887788899899*******************98888999999****************** PP

                     HHHHHHHCC CS
  Glyco_hydro_35 307 lelkelika 315
                     +++++ i++
      KKY19511.1 266 YKMRDTISK 274
                     ****99875 PP

>> BetaGal_dom4_5  Beta-galactosidase jelly roll domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.4   2.4e+03      60      86 ..     235     261 ..     191     274 .. 0.61
   2 ?    1.4   0.0     0.074   4.5e+02      57      89 ..     344     372 ..     307     394 .. 0.61
   3 !   17.9   0.0   5.8e-07    0.0035      30     107 ..     455     532 ..     439     537 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.4
  BetaGal_dom4_5  60 sggtafrvsvwlNGyqlgsyvphigpq 86 
                     ++  + r+ v+   y +gs + ++g +
      KKY19511.1 235 GALWQNRTTVFTSSYDYGSPLDETGRT 261
                     333344555555555555555555555 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.074
  BetaGal_dom4_5  57 ltlsggtafrvsvwlNGyqlgsyvphigpqvtF 89 
                     ++ ++    rv v++NG+  g +     +q++ 
      KKY19511.1 344 VQAGDRPRDRVLVYVNGKIKGVMD----SQYQH 372
                     4556666779999***99877744....33334 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 5.8e-07
  BetaGal_dom4_5  30 ygfhagvrlyrgtfdldlpsg..ldvslsltl..sggtafrvsvwlNGyqlgsyvphigpqvtFpvpegilnyngenvlavl 107
                       +  +  +y+gtf   ++    +++++ l +  +  +    +vw+N+  lg+y   +gpq ++ vp  i++   +n + vl
      KKY19511.1 455 NTTSDSPIFYKGTF---TGPAisHNSTMTLDTflTVPNGIKGNVWVNDFHLGRYW-LVGPQQSLYVPGSIVKPGMKNEVVVL 532
                     44667789******...65552344444444488889999999**********75.58**************9999998886 PP

>> Glyco_hydro_42  Beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   2.8e-05      0.17      30      79 ..       8      69 ..       1      80 [. 0.88
   2 ?    1.6   0.0     0.023   1.4e+02     128     161 ..      91     123 ..      83     129 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.8e-05
                    -TT-HHHH-SBTTB---HH....HHHHHHHHHCTT-EEEEE-S........TTS--HHHHHH CS
  Glyco_hydro_42 30 gefaWaklePeegkydFew....LdevldllekagikviLatp........taapPaWlvkk 79
                     ++ W+ lePe+g++        + + +++++++g++v+L+++         ++ P Wl+ k
      KKY19511.1  8 SYIFWNNLEPEQGTWLSDKpendIARYFQIAQEEGLYVVLRPGpyicgeheWGGFPVWLTAK 69
                    6677**********9888889999*******************9*****999*******865 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.023
                     TEEEEE-SSSTTTTS--SHHHHHHHHHHHHHHHS CS
  Glyco_hydro_42 128 avilwhidnEygchecycetceeaFrkwlkekYg 161
                      +++++++nEyg      ++ + a r+ l+e+++
      KKY19511.1  91 PILMVQVENEYGS-FGENHNYTAALRDILRENFE 123
                     689*********9.77777888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 3460.79
//
Query:       KKY19512.1  [L=1521]
Description: putative izh family channel protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-56  190.7  19.2    3.9e-56  190.3  19.2    1.2  1  HlyIII    Haemolysin-III related


Domain annotation for each model (and alignments):
>> HlyIII  Haemolysin-III related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.3  19.2   2.2e-60   3.9e-56       4     224 .]    1270    1489 ..    1267    1489 .. 0.95

  Alignments for each domain:
  == domain 1  score: 190.3 bits;  conditional E-value: 2.2e-60
      HlyIII    4 hnEtlniwtHllgailfivlailllslaevken.sklakvvvlvfllgallcllcSalyHtlsihseeklrkffaklDysgIslliagsylplilya 99  
                  +nEt+niw+H++g+++++++a+++++  ++    sk++ ++ ++f+++a++cl+cS+++Ht++ + ++ l + fa++Dy+gIs+l+a+s+l+++ +a
  KKY19512.1 1270 SNETVNIWSHVIGLVIVLAIAFYFYPSNSLFTSsSKTDILIAACFFFAACKCLVCSVMWHTMNGIASQTLLERFACVDYTGISFLVATSILSTEWTA 1366
                  7****************9999888888877766799************************************************************* PP

      HlyIII  100 lakapkagllylslilalgvlgiisklvplfsrpearplravlfillgllgvipllhlllvltqlgeaa.elalvllvlggvlylvGavfYalrvPE 195 
                  ++++p  +++y++l+++lg+ g+i+ ++p f+r+ + + r+ ++i+l++ g  p+++ l +  +++  +   ++  +++++ +y+vGav+Ya++vPE
  KKY19512.1 1367 FYCEPVSRTVYMTLTIVLGLGGTIFPWHPTFNRADMAWARVGFYIALAATGFAPVVQ-LGITRGFD--WvLYFYAPIAKSLCVYVVGAVIYASQVPE 1460
                  *********************************************************.55556577..548999*********************** PP

      HlyIII  196 rlkpgkfdivghsHqiFHvfvvlgalfhy 224 
                  +++pg fd++g sH+i+H+ v+ g+lfhy
  KKY19512.1 1461 KWWPGLFDYAGASHNIWHLAVLGGILFHY 1489
                  ****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.52
# Mc/sec: 8884.30
//
Query:       KKY19513.1  [L=1574]
Description: putative translation elongation factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.5e-179  598.0   8.3   2.2e-178  594.1   8.3    2.0  1  K_trans      K+ potassium transporter
      2e-58  197.1   0.4    4.1e-58  196.1   0.4    1.5  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    2.8e-33  114.3   0.1    5.7e-33  113.3   0.1    1.6  1  EFG_IV       Elongation factor G, domain IV
    2.2e-32  111.0   0.0      5e-32  109.8   0.0    1.7  1  EFG_II       Elongation Factor G, domain II
    6.1e-23   80.7   0.1    3.8e-22   78.1   0.0    2.4  3  EFG_C        Elongation factor G C-terminus
    9.9e-13   48.3   0.1    2.5e-12   47.0   0.1    1.8  1  GTP_EFTU_D2  Elongation factor Tu domain 2
      1e-06   28.6   0.0    2.6e-06   27.3   0.0    1.6  1  RF3_C        Class II release factor RF3, C-terminal domain
  ------ inclusion threshold ------
       0.14   12.0   2.1       0.14   12.0   0.0    2.1  2  ATP_bind_1   Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> K_trans  K+ potassium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  594.1   8.3  9.8e-182  2.2e-178       2     534 .]     104     722 ..     103     722 .. 0.94

  Alignments for each domain:
  == domain 1  score: 594.1 bits;  conditional E-value: 9.8e-182
     K_trans   2 lqalgvvygdigtSPLYvlksifeakatepseedilGvlSlifwtLilivtvkYviivlradnkgeGGilaLlalia...................... 78 
                 +qa gv+ygdigtSPLYv++s+f   +++p+ +d+lG+lSli+wtL+liv+vkYv+ivlrad++geGG++a+++l++                      
  KKY19513.1 104 YQATGVIYGDIGTSPLYVYSSTF---SADPTYDDLLGALSLIIWTLTLIVSVKYVLIVLRADDEGEGGTFAVYSLLTryahlterdpreattvkmersl 199
                 799********************...9************************************************************************ PP

     K_trans  79 ............slkkskkkakwlllilaliGaalllgDgvltPaisvlsAveGlevaspsle.klvvpislvilvlLFliQkfGtekigklfgpimli 164
                             ++ +++k ak++l +++++G+al+++Dg+ltPa+svl+A++G+ev+ +s++ ++++ +s++ilv+LF++Q +G +k+++ f+pi++i
  KKY19513.1 200 tndmrpagrnarRFFEQSKFAKIFLKFIGVFGVALIMADGILTPAQSVLGAIQGIEVVDSSITkSTIIGVSCAILVVLFVLQPLGVTKLANSFAPIVVI 298
                 *****9999999889999999999***********************************999989********************************** PP

     K_trans 165 WflllavlGiln....................ivkkpsvlkAlnPlyaiefllrnklagflvLgavlLavTGaEaLyaDlGhfgkkpirlawlllvlpa 243
                 W+l+ + +Gi+                      + ++svlkA++P++a ++l+rnk++g+ +Lg+vlLa+TG+EaL+aDlG f++++++++wl++++p+
  KKY19513.1 299 WLLFNLSFGIYVrfqdsdatfrtpysftlknlALFDASVLKAFSPYFAGSYLVRNKTEGWKSLGGVLLAFTGVEALFADLGAFSRRAVQMSWLCFAFPC 397
                 **********9644444444444444432221122468************************************************************* PP

     K_trans 244 LllnYlGQgalllknpeavsnpfyelipealllpllvlatlatiiASQalIsgvFslvsqaiklgllPrlkvvhtsekeegqiYiplvNwllliavilv 342
                 Ll++Y+GQ+a++ ++p a snpfy+++p  +++p lv+a+la+i+ASQa I+++F+l++q++kl+++P++k +hts++  gq+Yip+vNwll++++++v
  KKY19513.1 398 LLVAYIGQAAYISRHPGAWSNPFYNSVPPGMFYPSLVVAILAAIVASQATITACFQLLTQIMKLSYFPQIKTIHTSRNFYGQVYIPAVNWLLMVGTVVV 496
                 *************************************************************************************************** PP

     K_trans 343 vlvFksssnlaaAYGlavtltmlittlllllvlvlvwklklilvllvlllfllidllflsanlkKipeGgwvplllavvlllimltWkygrkkllekea 441
                 +++++++++l++AYG++v+l+ +itt+++ +v+v++w++++++vl+++l+f+++d+++ls++l+K+p+G+w++l+la++l +++++W+ g+++++++ea
  KKY19513.1 497 TAAYSDTTKLGHAYGVCVILVTFITTCMVSIVAVIIWRIPVLVVLFFFLAFGALDGVYLSSALTKVPDGAWFTLALALTLSSVFILWRFGKEQQWKAEA 595
                 *************************************************************************************************** PP

     K_trans 442 eeevpleellkllekkkvk....................rvpgtavflssak..etvpavllhilkklkvlhervvllsvktlevpkvpkeerveve.. 516
                 e++ p  ++l++ +++  +                    r++g+++f+ +a   +t+p v++h+l+k+++++e +v+++++ ++ p++p++er++v+  
  KKY19513.1 596 EDRFPPAHILEIDDSHGFEgdkqagvlrltptfggslvnRIEGMGIFFDKAGssSTTPTVFIHFLQKFHAAPELIVFFHLRPVHLPSIPPDERYTVTrc 694
                 ***********99998877888999***********************65543499****************************************966 PP

     K_trans 517 .....klks.......eglvrvvvryGfme 534
                      +  +       ++++r+v+r+G+m+
  KKY19513.1 695 fsarkE--TntakiplPNCFRLVIRHGYMD 722
                 665542..1446678899**********96 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.1   0.4   1.8e-61   4.1e-58       2     193 ..     891    1173 ..     890    1174 .. 0.91

  Alignments for each domain:
  == domain 1  score: 196.1 bits;  conditional E-value: 1.8e-61
                  CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHST...HCHSHHHHHHTSCSSCEEEEEE.....T.TCSSEEEEEEEESSSGGGHHHHHH CS
    GTP_EFTU    2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeerv...lDtlkeErergiTiksaaisle.....k.etkkylinliDtPGHvdFskevir 89  
                  r+rnigi++h+D+GKtT t+r+l++tg+i+  +e++++++v   +D+++ Ere+giTi+saa+ ++     + e kk++inliDtPGH+dF+ ev+r
  KKY19513.1  891 RVRNIGIAAHIDSGKTTATERVLFYTGRIKAIHEVRGKDSVgakMDSMDLEREKGITIQSAATFCDwvkkeNgEDKKFHINLIDTPGHIDFTIEVER 987 
                  79**********************************55544555************************9863699********************** PP

                  HHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH................................. CS
    GTP_EFTU   90 glrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk................................. 153 
                  +lrvlDgav++++av+Gv++qt +v r++++++vp+i+fiNKmDr++a+  + ve+++qkl+ +                                 
  KKY19513.1  988 ALRVLDGAVMILCAVSGVQSQTITVDRQMRRYNVPRITFINKMDRMGANPFKAVEQINQKLKIHaaavqipvgreedfkgvvdlirmktlyaegsrg 1084
                  *************************************************************777********************************* PP

                  ..................................................HHHHHHHHHTTT.........TTEEEEEEBTTTTBTHHHHHHHHHHH CS
    GTP_EFTU  154 ..................................................eeklekygekge.........kevpvvfgSalkgegvktllealvel 191 
                                                                    +          +         k++pv++gSal  + v+++l+ + ++
  KKY19513.1 1085 efivvkdeipedvqelarerraqlietladvddevaelfleekepteqqlK----------DairratvslKFTPVFMGSALADKFVQPMLDGVCDY 1171
                  *********999999999999999999999987777766666665544433..........04444556668************************* PP

                  SH CS
    GTP_EFTU  192 lp 193 
                  lp
  KKY19513.1 1172 LP 1173
                  98 PP

>> EFG_IV  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3   0.1   2.5e-36   5.7e-33       1     120 [.    1369    1487 ..    1369    1488 .. 0.99

  Alignments for each domain:
  == domain 1  score: 113.3 bits;  conditional E-value: 2.5e-36
                  TCCESCEE.SS-CCHCCCCCCCHTSSSHCCCCCEEEECCTTTTSSEEEEE--STCCCHCCCCHHHHCCCCCCTTS-TTTS--EESEEEEEEEEE--T CS
      EFG_IV    1 pqVayrEtirkpvkereeklkkqsggdgqyakvileiePleegsgnefvdetkggqvpkeyieavekGfqealkeGplagepvtdvkvtLldgslhe 97  
                  pqVayrEt++++v+ +++ lkkq+gg+g+ya+v   +ePl + +gn f +e++gg++ +++i a+ekGf+ a+++Gpl+g++v +  +t+ dg++h 
  KKY19513.1 1369 PQVAYRETVTERVD-FDHLLKKQTGGAGDYARVAGFMEPLANLEGNKFTEEIVGGAISEKFIFACEKGFNAACEKGPLIGHRVLGTGMTINDGATHM 1464
                  8*************.********************************************************************************** PP

                  TTC-HHHHHHHHCHHHHHHHHCC CS
      EFG_IV   98 vdsseaafkpaarralkeallkA 120 
                   dsse  f++a+++a+++a+++A
  KKY19513.1 1465 TDSSEQSFRNATQQAFRKAFMDA 1487
                  ********************998 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.0   2.2e-35     5e-32       1      75 []    1294    1368 ..    1294    1368 .. 0.99

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 2.2e-35
      EFG_II    1 fPePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkreykvevelgk 75  
                  +PePvisl+i+p+ ++d +++ska+ar+++EDpt+rv++d+e++eti+sGmGelHle++ver++rey ve+e+g+
  KKY19513.1 1294 VPEPVISLSIKPRHSKDGQNFSKAIARFQREDPTFRVHFDSESEETIISGMGELHLEVYVERMRREYRVECETGQ 1368
                  8***********************************************************************986 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.7   8.3e+03      11      36 ..    1087    1112 ..    1087    1120 .. 0.78
   2 ?   -1.8   0.0       1.5   3.4e+03      45      72 ..    1371    1398 ..    1338    1408 .. 0.82
   3 !   78.1   0.0   1.7e-25   3.8e-22       2      85 ..    1491    1573 ..    1490    1574 .] 0.97

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.7
                  EEEECCCCCCHHHHHHHCT-EEEEEE CS
       EFG_C   11 ievpeeyvgkvisdlssrrGeiedme 36  
                  i v +e   +v ++  +rr++++++ 
  KKY19513.1 1087 IVVKDEIPEDVQELARERRAQLIETL 1112
                  56778888899988888***999875 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.5
                  EEEEEEGGG-TTHHHCHHHCTTTS-EEE CS
       EFG_C   45 ieaeiPlaeligfateLrslTkGegsfs 72  
                  + ++  + e ++f   L++ T G g + 
  KKY19513.1 1371 VAYRETVTERVDFDHLLKKQTGGAGDYA 1398
                  55666677889999*********99875 PP

  == domain 3  score: 78.1 bits;  conditional E-value: 1.7e-25
                  EEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHH CS
       EFG_C    2 llEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdk 85  
                  +lEP++k  i++p+e++g+v+++l++r++ i+d+e+   + ++i a++ l +++gf+++Lr++T+G+g+fsmefs+Ye++pg++
  KKY19513.1 1491 VLEPLMKTVITAPTEFQGNVVGLLNKRNAVINDTETG-VEDFTIYADCSLHGMFGFSSNLRAATQGKGEFSMEFSHYEKAPGQL 1573
                  79***********************************.*******************************************997 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.1   1.1e-15   2.5e-12       1      74 []    1215    1281 ..    1215    1281 .. 0.97

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 1.1e-15
                   EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2    1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74  
                   G+++++rvy+Gtl+kG +v +   +t+kk   ++i ++ ++h +e e+  +  aG i+a+ g+++a   Gdt+t
   KKY19513.1 1215 GQLTYIRVYQGTLRKGANVFN--ARTDKK---VKIPRIVRMHSNEMEEATEIGAGEICAVFGVDCA--SGDTFT 1281
                   7899*****************..******...*********************************7..9**985 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.2e-09   2.6e-06      15      91 ..    1303    1379 ..    1289    1396 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.2e-09
                  EEESSGGGHHHHHHHHHHHHHCTSSEEEEET.TSS-EEEEESSTHHHHHHHHHHHHHH---EEEEE-S--EEEEEE- CS
       RF3_C   15 vrlkdplkrkqlrkgleqLaeEGavqvfkeeeageelilgaVGqLQfeVveeRlknEYgvevrleslpyslarwves 91  
                  ++ + +   ++++k++  ++ E  +   + ++++ee+i++ +G+L +eV  eR+++EY+ve+++ + ++ +   v++
  KKY19513.1 1303 IKPRHSKDGQNFSKAIARFQREDPTFRVHFDSESEETIISGMGELHLEVYVERMRREYRVECETGQPQVAYRETVTE 1379
                  55566677789***********9887777777899****************************99988888777755 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   1.0       2.7   6.1e+03     139     163 ..     517     541 ..     512     542 .. 0.91
   2 ?   12.0   0.0   6.1e-05      0.14      74     172 ..     950    1036 ..     902    1078 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.7
  ATP_bind_1 139 tkfisgllsalsamlrlelPhvvvl 163
                 ++fi ++++++ a++  ++P +vvl
  KKY19513.1 517 VTFITTCMVSIVAVIIWRIPVLVVL 541
                 68******************99987 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 6.1e-05
  ATP_bind_1   74 flresldwldeelekeed.dyllfDtPGQielfthseslakiveeLes.efalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDl 168 
                    ++ +dw+++e ++ ++    l+DtPG i +   +e      + L    + l++v  v sq++t      ++       m r+++P ++ +nk+D 
  KKY19513.1  950 SAATFCDWVKKENGEDKKfHINLIDTPGHIDFTIEVERAL---RVLDGaVMILCAVSGVQSQTITV-----DR------QMRRYNVPRITFINKMDR 1032
                  445666*******888777999*********988888777...55555455666666666666664.....33......577789999999999998 PP

  ATP_bind_1  169 lkek 172 
                  +  +
  KKY19513.1 1033 MGAN 1036
                  6633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       949  (0.052931); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.04u 0.31s 00:00:01.35 Elapsed: 00:00:00.53
# Mc/sec: 8995.93
//
Query:       KKY19514.1  [L=717]
Description: putative mucin-7 precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1158  (0.0645881); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.67u 0.39s 00:00:02.06 Elapsed: 00:00:00.66
# Mc/sec: 3261.85
//
Query:       KKY19515.1  [L=200]
Description: hypothetical protein UCRPC4_g04498 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.34s 00:00:00.88 Elapsed: 00:00:00.53
# Mc/sec: 1132.94
//
Query:       KKY19516.1  [L=317]
Description: putative allergen asp f 4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.021   14.6   0.9      0.039   13.7   0.9    1.5  1  Robl_LC7      Roadblock/LC7 domain
        1.8    7.0   3.9        2.2    6.7   3.9    1.1  1  Macoilin      Macoilin family
          2    6.9   6.2        2.8    6.5   6.2    1.2  1  SWI-SNF_Ssr4  Fungal domain of unknown function (DUF1750)


Domain annotation for each model (and alignments):
>> Robl_LC7  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.9   6.5e-06     0.039      11      49 ..      31      70 ..      24      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.5e-06
                HHCTECEEEEEETTS-EEEE.CCSSSS-HHHHHHHHHHHH CS
    Robl_LC7 11 svpgvrgalvvskdGlviat.stldnddadqlAalasgll 49
                + + v +++vv+ dG+v+++   +d+++a  +Aa+as+ +
  KKY19516.1 31 QKRAVGDIVVVTMDGQVVSWvNEYDGSAATTTAAAASATA 70
                5677889***************************999764 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   3.9   0.00037       2.2     297     350 ..      69     121 ..      13     154 .. 0.43

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00037
    Macoilin 297 rlsksessgsesellveesvkskssssssssnknskkasagsagssnssskkhs 350
                     ++s + + ++ v++  +s ss++s+ss++ns +as+  ++  +sssk+++
  KKY19516.1  69 TAPAETSATATASVEVSSGETSASSTASASSASNSGSAST-YSDFCSSSSKNKR 121
                 1111111111111111111111111111111122222211.1111222222222 PP

>> SWI-SNF_Ssr4  Fungal domain of unknown function (DUF1750)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   6.2   0.00047       2.8     580     661 ..      22     103 ..      10     133 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00047
  SWI-SNF_Ssr4 580 eketetapdaatesgdwVvvpkggkspseaaakaaaeasaeagaaaaekaakesaakateaagkeattpaakaasaaatpea 661
                   ++++++ +d++   gd Vvv  +g+  s  ++ +  +a+++a+aa+a+++a++sa+++++++ +++ t+a+++asa+++ + 
    KKY19516.1  22 HRRHQKFHDQKRAVGDIVVVTMDGQVVSWVNEYDGSAATTTAAAASATAPAETSATATASVEVSSGETSASSTASASSASNS 103
                   45566789999**********9999888888887777777777777777775555666666666665555555554444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1297  (0.0723409); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.50
# Mc/sec: 1888.96
//
Query:       KKY19517.1  [L=628]
Description: putative mfs multidrug [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-38  131.4  35.0    3.6e-38  131.4  35.0    2.0  2  MFS_1       Major Facilitator Superfamily
    0.00014   20.4   7.7    0.00014   20.4   7.7    2.4  3  TRI12       Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.4  35.0   4.1e-42   3.6e-38       2     353 .]     144     553 ..     143     553 .. 0.83
   2 !    3.2   4.2    0.0039        35     135     167 ..     567     601 ..     556     616 .. 0.70

  Alignments for each domain:
  == domain 1  score: 131.4 bits;  conditional E-value: 4.1e-42
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 ++a +l+a++++ +++a++ +l+++ g+s  +++  +t++ lg+++a ++l+++s+  Gr  v++l+ ++f+lg+l +++ + ++  +lv+r++ G ga
  KKY19517.1 144 CIASMLAAYSAGSYAMAAS-HLMKAWGVSQIAVNVGITMFVLGFGFAPMILAPFSEVKGRYGVFVLAGTVFSLGTLGCAV-TRSYaGMLVSRFIVGSGA 240
                 78999**************.******************************************************566664.777779************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 ++++++++ +++d+++k +r+ a++++s+++ +G+ lgpll+g++++++ Wr++fy+  i+  +   l++++++e++ +   ++++  +          
  KKY19517.1 241 SVFATIVGGVVSDIYHKADRNTAMSMYSLSVFVGTGLGPLLSGIISDHITWRWIFYLQMIMIGITTALIIFFFRETRGNVILQRKAAALnkyyeslend 339
                 *******************************************************************999***9999999999999999********** PP

       MFS_1 189 .............kgtgpaplvp.........................awkallkdpvl.willialllfffgfsglltllplylqevlglsglllagl 248
                              + ++++pl+p                         ++k+l +  v+ w+ l++++ +++ ++++++   ++ ++ +g+s+  ++g+
  KKY19517.1 340 ghlgimwpsdnstEDPEKRPLRPqrirfhaptekrrslpkmiyfsfkfPLKLLATESVVfWFSLWVSFAWAILYMQFSSIGLVF-KTNHGFSN-SQIGG 436
                 *************77777777776666666666677777888888888888888888665888888888876666677776666.*******4.44444 PP

       MFS_1 249 llallalvgail...allagrlsdr.lgr......rrrlllallllllaalglallavtssavllll..vlvl..iGf.glgfvfpsllalasdlappe 332
                 +++ + ++++i+   ++   +l+ r l +      + rl++a++  +++ +gl++++++s + ++++   l++  +++  ++++ + +++la+ ++  +
  KKY19517.1 437 VFSSIIVASIIFtwiSIYQEKLVVRyL-PktastpEGRLYFACIESAFLPIGLFWFGWSSFSNIHWIvpTLAIgsCTIgIFSIYLAVFNYLADTYH--R 532
                 444444443333355555555554442.23444569***********************5555555533666677777566666777777777777..* PP

       MFS_1 333 eagtasglfntagslggalgp 353
                 +a +a+++ +++++l + ++p
  KKY19517.1 533 YASSALAAQSMCRNLLAGIFP 553
                 **************9888876 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0039
       MFS_1 135 ilgpllgg..llasslgWravfyilaivsllafvl 167
                   g llgg  +l++++ W ++ +i+ i+ ++ +++
  KKY19517.1 567 GAGSLLGGigILLTAVPWKVIIIIIIIIIIIIIII 601
                 45555555446667888999999999999998875 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   7.7   1.6e-08   0.00014      68     219 ..     162     315 ..     131     344 .. 0.74
   2 ?   -4.7   0.9      0.64   5.8e+03     262     294 ..     423     455 ..     399     462 .. 0.71
   3 ?   -5.4  10.9       1.1   9.6e+03     117     215 ..     502     604 ..     489     614 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.6e-08
       TRI12  68 pnilqdvgqsens.slfstlwttgqavsilvmgrltdrfgrrp.fvilthilglvgaivgctatk.fntllaamtllgvaagp.agasplfvgelmsnk 162
                   +++  g s+   ++  t++ +g   + +++  +++  gr   fv++  ++  +g+ +gc+ t+ +  +l +  ++g  a   a     +v ++  + 
  KKY19517.1 162 SHLMKAWGVSQIAvNVGITMFVLGFGFAPMILAPFSEVKGRYGvFVLAGTVFS-LGT-LGCAVTRsYAGMLVSRFIVGSGASVfATIVGGVVSDIYHKA 258
                 45555555555331344577888888888888888888888761555555554.565.57766642788999999998766541556667778888888 PP

       TRI12 163 tkflgllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyyp 219
                  +   + + s+ v v +gl+p l   ++   +wrwify+ +i+  i+  li+ ++  
  KKY19517.1 259 DRNTAMSMYSLSVFVGTGLGPLLSGIISDHITWRWIFYLQMIMIGITTALIIFFFRE 315
                 88999999*******************************************998865 PP

  == domain 2  score: -4.7 bits;  conditional E-value: 0.64
       TRI12 262 gkpnspwnsakviglissglgslvvfalyevyg 294
                  k n  +  +++ g++ss + + ++f+   +y 
  KKY19517.1 423 FKTNHGFSNSQIGGVFSSIIVASIIFTWISIYQ 455
                 467788888888888888888888888777764 PP

  == domain 3  score: -5.4 bits;  conditional E-value: 1.1
       TRI12 117 lglvgaivgctatkfntllaamtllgvaagpagasplfvgelmsnktk.flgllivs.ipvvvtsglspylgqr..laiqgswrwifyiyiitsaiavl 211
                 +    ai  ct   f   la +  l  +     +s l    +  n    ++ l++      ++ +g++  lg    l     w+ i+ i ii+  i ++
  KKY19517.1 502 IVPTLAIGSCTIGIFSIYLAVFNYLADTYHRYASSALAAQSMCRNLLAgIFPLITNMmFTNLTYQGAGSLLGGIgiLLTAVPWKVIIIIIIIIIIIIII 600
                 344558999***************999999999999999888888755144454443145677899999999761144455677777777776666666 PP

       TRI12 212 livv 215
                 +i++
  KKY19517.1 601 IIII 604
                 6665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1455  (0.0811534); expected 358.6 (0.02)
Passed bias filter:                      597  (0.033298); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.50
# Mc/sec: 3798.94
//
Query:       KKY19518.1  [L=505]
Description: putative phospho-2-dehydro-3-deoxyheptonate class ii [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.1e-198  659.3   0.0   2.4e-198  659.1   0.0    1.0  1  DAHP_synth_2  Class-II DAHP synthetase family


Domain annotation for each model (and alignments):
>> DAHP_synth_2  Class-II DAHP synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  659.1   0.0  1.3e-202  2.4e-198       1     437 []       9     480 ..       9     480 .. 0.98

  Alignments for each domain:
  == domain 1  score: 659.1 bits;  conditional E-value: 1.3e-202
  DAHP_synth_2   1 wspsswrskpaaqqpeyedeealekvlkklkklpplvtaeeieklkeqLaevaegkaflLqgGdCaEsfeectaekieeklkvllqmslvltlgasl 97 
                   wsps+w +kp++q+++yed++a+ ++++kl++lpplvt++ei klk++L++va g+aflLqgGdCaE f++c++  ie+k+k+llqmslvl++ga++
    KKY19518.1   9 WSPSTWTKKPIKQDVTYEDKAAFGSAIQKLERLPPLVTPQEIVKLKNSLKDVALGNAFLLQGGDCAELFDYCNQPMIEAKVKLLLQMSLVLIYGAKK 105
                   99*********************************************************************************************** PP

  DAHP_synth_2  98 pvvkigRiAGqyaKPRSsetetvdgkelpsyrGdivnglelteeeRepdPerllkaYfhsaatlnlvrallssgladlekveewnlefvksselkek 194
                   +vv+++R+AGq+aKPRSs++e++dg e+ps+rGd++ng+e+t+e+R+pdP+rl++aYfhsaatln++ra+lssgladl+++ +w l++v +++lk++
    KKY19518.1 106 KVVRVARMAGQFAKPRSSPMENIDGIEMPSFRGDNINGYEPTPEARKPDPARLVDAYFHSAATLNYLRAALSSGLADLHSPLDWGLGHVVDPDLKSR 202
                   ************************************************************************************************* PP

  DAHP_synth_2 195 yeelaeeleealefmkaigvdeeeeeeleevdlytsHeaLlleyeealtr................................kdsetklydtsahfl 259
                   y++++++++++l++mk+ig+++     le+vdl+tsHe+L+leye+a+tr                                   ++++y+ts+hfl
    KKY19518.1 203 YQRIVDRITDTLDMMKTIGLNT--GGGLETVDLFTSHEGLVLEYEQAFTRlfrhppaalttqpepniplrerktslpsrlhpLPPTSGYYNTSGHFL 297
                   ********************66..778***************************************************9988678899********* PP

  DAHP_synth_2 260 WiGdRTrqldgahveflrgieNpigvKvgpslkpeelvelldilnPekepGrltlitRlgadkveelLpklieavkksgakvvwvcDpmHGNtltss 356
                   WiGdRTrql +ahvef+rg++NpigvKvgps+ p+++  lldilnP++e G++tlitR+ga k++++Lp++i+av++sg+  vw+cDpmHGN +t++
    KKY19518.1 298 WIGDRTRQLTNAHVEFFRGLSNPIGVKVGPSMPPNDIPPLLDILNPNREIGKVTLITRYGAGKISQHLPAHIAAVQASGHIPVWQCDPMHGNGRTAQ 394
                   ********************************************************************************************88776 PP

  DAHP_synth_2 357 .....sglKtRefedilkEvksfleihkeegsvlgGvhlEltgedVtEclggseelseedlserYetlcDPRLnaeqslelaflia 437
                         ++KtR+f+dil+E+k++leih+++gs+lgGvhlEltge VtEc+gg+e l+eedls +Y+t+cDPRLn++q+lelafl+a
    KKY19518.1 395 vsttgGSFKTRRFSDILSELKQALEIHRSMGSYLGGVHLELTGEPVTECVGGAEGLTEEDLSLNYTTFCDPRLNEKQALELAFLVA 480
                   55543459****************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3576.22
//
Query:       KKY19519.1  [L=250]
Description: putative 14-3-3 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.1e-100  335.7   0.5   1.4e-100  335.4   0.5    1.1  1  14-3-3         14-3-3 protein
  ------ inclusion threshold ------
      0.075   13.6   8.5       0.25   11.9   4.0    2.6  2  Ribosomal_60s  60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> 14-3-3  14-3-3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  335.4   0.5  1.5e-104  1.4e-100      14     222 .]       1     210 [.       1     210 [. 0.99

  Alignments for each domain:
  == domain 1  score: 335.4 bits;  conditional E-value: 1.5e-104
                 HHHHHCHHHHCSS---HCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCTCC.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHCH.-SHHHHHHH CS
      14-3-3  14 mveymkkvvelkeeLskeernlLsvayKnvvgarRaswrvlssieqkeeske.ekkvelikeyrekiekeLkeiceevlelldktlipkatseeskvfy 111
                 mv+ymk+v++l+ eLs++ernlLsvayKnvvg+rRaswr++ssieqkeesk+ +k+v +i+eyr+kie+eL+++c++vl++ld+ lipka+s eskvfy
  KKY19519.1   1 MVTYMKEVANLGGELSVDERNLLSVAYKNVVGTRRASWRIISSIEQKEESKGsDKHVGTIREYRQKIETELEKVCQDVLDVLDESLIPKAESGESKVFY 99 
                 99**************************************************9999*******************************99********** PP

                 HHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHTTTGCC-HHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHCCHCCCCCS.TTTHHHHHHH CS
      14-3-3 112 lkmkgDyyRYlaEfaegeekkeaaekakeaYeeAleiakkelqpthpirLglaLNySVflyeilnspekAcelakkafdeaiaeldelseesykdstli 210
                 +kmkgDy+RYlaEfa+ge++k aa++a+eaY++A+++a++el+pthpirLglaLN+SVf+yeilnsp++Ac+lak+afd+aiaeld+lseesy+dstli
  KKY19519.1 100 HKMKGDYHRYLAEFASGEKRKVAATAAHEAYKNATDVAQTELTPTHPIRLGLALNFSVFYYEILNSPDRACHLAKQAFDDAIAELDSLSEESYRDSTLI 198
                 *************************************************************************************************** PP

                 HHHHHHHHHHHC CS
      14-3-3 211 lqlLrdnltlWt 222
                 +qlLrdnltlWt
  KKY19519.1 199 MQLLRDNLTLWT 210
                 ***********8 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.012   1.1e+02      30      64 ..     102     135 ..      69     141 .. 0.64
   2 ?   11.9   4.0   2.8e-05      0.25      48      78 ..     218     245 ..     170     248 .. 0.54

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.012
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  30 legkdieellangaaklaaaaaaaaaaaaaaaaaa 64 
                    ++g d + +la+ a++    +aa+aa +a ++a +
     KKY19519.1 102 MKG-DYHRYLAEFASGEKRKVAATAAHEAYKNATD 135
                    444.5667777777664344455555555555444 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.8e-05
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX CS
  Ribosomal_60s  48 aaaaaaaaaaaaaaaaaaaeekkkeeeeeEe 78 
                    +aa+++ a  +++aa++a e+k+++    Ee
     KKY19519.1 218 EAAPSTEAPKEEKAAEPATEAKEEKT---EE 245
                    22233333333333333333322222...33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1100  (0.0613531); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.50
# Mc/sec: 1493.53
//
Query:       KKY19520.1  [L=1045]
Description: putative endoplasmic reticulum calcium [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-52  177.9   3.6    2.5e-51  173.8   1.3    2.7  2  E1-E2_ATPase     E1-E2 ATPase
    1.9e-46  158.1   5.9    1.9e-46  158.1   5.9    2.0  2  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    1.2e-24   87.8   0.2    5.8e-24   85.6   0.2    2.2  1  Hydrolase        haloacid dehalogenase-like hydrolase
    7.5e-19   67.2   0.1    3.5e-18   65.1   0.0    2.2  2  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    1.4e-16   60.4   0.0    2.7e-16   59.4   0.0    1.5  1  Cation_ATPase    Cation transport ATPase (P-type)
    2.9e-09   37.0   0.9    9.1e-07   28.9   0.6    2.4  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
    1.7e-07   31.8   0.0    6.7e-07   29.9   0.0    2.0  2  HAD              haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.42   10.8   2.9        3.3    7.9   0.0    3.4  4  Phage_holin_3_5  Bacteriophage holin Hol, superfamily III


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.023        51     114     159 ..      89     134 ..      64     142 .. 0.86
   2 !  173.8   1.3   1.1e-54   2.5e-51       2     181 .]     157     361 ..     156     361 .. 0.97

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.023
                   HHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS CS
  E1-E2_ATPase 114 kldklgkvlvpvvlliallvflialllgkslaeallralallvaai 159
                    l+++  +lv++ l  a++ f++al+ +++ ++a++  +++l++ i
    KKY19520.1  89 VLEQFKDQLVLILLGSAAISFVLALFEEGDDWTAFVDPVVILTILI 134
                   57888899***************************99999998876 PP

  == domain 2  score: 173.8 bits;  conditional E-value: 1.1e-54
                   SS--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S...EEE-TTTS---S-EE-.............G-TTEE-TT-EEEE-EEE CS
  E1-E2_ATPase   2 llpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsa...evdesaLTGEslpvek.............ekgdmvfsGtvvvsgeak 82 
                   +++++akv+r+g +++i+a+elvpGDi+ +  gdr+paD+r+++ ++   +vd+++LTGEs+ v+k             ++ + +fsGt+vv g+a+
    KKY19520.1 157 YSANEAKVVRNGHTHKIKAEELVPGDIISVAVGDRIPADCRLLSIQSnsfKVDQAILTGESESVDKdikaiqdpqavkqDQINILFSGTTVVTGHAT 253
                   57899*************************************9966666****************************999***************** PP

                   EEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT.........HHHHHHHHHHHHHS-TTHHHHHHHH CS
  E1-E2_ATPase  83 avVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla.........eallralallvaaiPcaLplavpla 170
                   avV+ tg +t +g i +++ ++ s+ tpl++kld +g  l++v+++i++lv+li++ +++++a         ++l  a++l vaaiP++L+++++++
    KKY19520.1 254 AVVVLTGGSTAIGDIHESITSQISEPTPLKQKLDDFGDSLAKVITVICILVWLINIQHFNDPAhgsfskgaiYYLKIAVSLGVAAIPEGLAAVITTC 350
                   ***********************************************************************889999******************** PP

                   HHHHHHHHHHT CS
  E1-E2_ATPase 171 lalgarrlakk 181
                   lalg+r++a k
    KKY19520.1 351 LALGTRKMAAK 361
                   ********975 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.5   1.1e+03      60      81 ..     296     317 ..     232     349 .. 0.60
   2 !  158.1   5.9   8.3e-50   1.9e-46       1     181 [.     814    1018 ..     814    1019 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.5
  Cation_ATPase_C  60 lqalvtllvffltlllfgisek 81 
                      +++++++lv++++++ f+  ++
       KKY19520.1 296 VITVICILVWLINIQHFNDPAH 317
                      3445555555555554433333 PP

  == domain 2  score: 158.1 bits;  conditional E-value: 8.3e-50
  Cation_ATPase_C    1 plplsaiqiLwinLvtDllpalaLaleppekdimkrpPrkkkepliskkmlrriliqgllqalvtllvffltlllfgisekenkls...... 86  
                       p +l ++q+Lw+nLvtD+lpa+aL+++pp+ d+m+rpPrk++e l+ + +++r +++g++++++t++ +++++ +++  ++   ++      
       KKY19520.1  814 PEALIPVQLLWVNLVTDGLPATALSFNPPDHDVMRRPPRKRDEALVGGWLFFRYMVIGVYVGAATVFGYAWWFMFYSGGPQITFWQlshfhr 905 
                       67899********************************************************************9998888888888999999 PP

  Cation_ATPase_C   87 ...................snyaqtmaFitlvlsqifnalnlrsrreslfkfsglfsnkllllaillslllqvlivyvpglnavfgtaplsl 159 
                                           ++a+tm + +lv++++fna+n  s++esl++ + l++n++l++ai+ls++l++ i+y+p+l+ +fg++pl++
       KKY19520.1  906 cssfepaidcnlfapsaasTKSASTMSLSILVVIEMFNAMNGLSSSESLLT-MPLWKNMILVYAITLSMVLHFGILYTPFLQGLFGIVPLNW 996 
                       9999999***********99*******************************.**************************************** PP

  Cation_ATPase_C  160 eewlialllalvvllvdelvKl 181 
                        ew  +l++++ v+l+de++K+
       KKY19520.1  997 DEWKAVLIISAPVILIDEVLKV 1018
                       ********************97 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.2   2.6e-27   5.8e-24       3     210 .]     379     745 ..     377     745 .. 0.76

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 2.6e-27
                 EEEEESBTTTBCHHHHHHHHHHHH................................CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTE.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxx................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
   Hydrolase   3 tvvfDkdGTLttgepsvedvivsa................................alalaaaletgsehpigkalvaaakarsgaltgfatfigrg.. 67 
                 +++ Dk+GTLtt ++sv +++                                   a++ + +l+++    i +  v +++a +g+ +++++ + +g  
  KKY19520.1 379 VICSDKTGTLTTNQMSVQKIVYLShtgygleeidvegttfapegrlsqggkalenpAVSSNTILQMAEVLAICNDSVLEFDAKTGNHSNVGE-PTEGal 476
                 7999***************9999977777777777777655555554444444444333333333333333333333333333444444444.333355 PP

                 HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH............................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................................... RF
   Hydrolase  68 ayaigkpewltaldippdlgaaigsaqsqgrtvall............................................................... 103
                 ++++ k    ++       +++ +s+  ++r ++                                                                 
  KKY19520.1 477 RVLVEKIGTNDSK-----INQKRSSLAIEDRLHYASkyfesklplqatfefsrdrksmsvlagtgtaqklfvkgapesvlercshvlvgsdgkrvpisk 570
                 3333333333333.....333334444444444333666666666666678888888888999999999999*************************** PP

                 .................................................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHH CS
                 .................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 104 .................................................qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraan 153
                                                                  +  + +++++ dp  ++pe+ae +++ k+agi+v+++tgdn++tae++ +
  KKY19520.1 571 hhssliaeevveygnrglrvlaiasveeissnplihkakttseyaqleqNMTLIGLVAMRDP--PRPEVAESIRKCKEAGIRVIVITGDNRNTAEAICR 667
                 ************************************************999***********..*********************************** PP

                 HTT..............GGGESEEEEHHCES.......STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxx..............xxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 154 qlG..............ddyfdaviasdiet.......vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 q+G               + fd   +s+  +       ++ ++p +k ++++ Lq ++e vam GDgvnDa+al++ +
  KKY19520.1 668 QIGvfgenedvtgksftGREFDSLSESEQLEaaqkaslFSRVEPTHKSKLVDLLQSSGEVVAMTGDGVNDAPALKKSD 745
                 ***999997777655554444444444444488888999999********************************9865 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   1.5e-21   3.5e-18       7      69 .]      46     108 ..      41     108 .. 0.96
   2 ?   -3.3   0.0       3.4   7.6e+03      24      39 ..     148     163 ..     146     166 .. 0.79

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 1.5e-21
  Cation_ATPase_N   7 eevlekLetdlenGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalvs 69 
                       evl+++++++ +GLt+a++ + +++yG+N l+e ++++lw+++l+qf++ lv++Ll +a++s
       KKY19520.1  46 PEVLKHFDVTEASGLTDAQVTKIRSQYGSNSLPEDPPTPLWKLVLEQFKDQLVLILLGSAAIS 108
                      69***********************************************************98 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.4
  Cation_ATPase_N  24 aeaaerlkkyGpNelk 39 
                      + a + l++y  Ne k
       KKY19520.1 148 EKAIAALQEYSANEAK 163
                      67788899*****986 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0   1.2e-19   2.7e-16       2      91 .]     450     557 ..     449     557 .. 0.85

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 1.2e-19
  Cation_ATPase   2 lcNsaafsensekdevkllGnktEsALlvlaeklgldteelree....................tkkvqeipFnssrKrmsvvlklepekkvrlyv 77 
                    +cN++ ++ ++++++ + +G++tE AL vl+ek+g + ++++++                     +  ++++F+++rK+msv+  +       l+v
     KKY19520.1 450 ICNDSVLEFDAKTGNHSNVGEPTEGALRVLVEKIGTNDSKINQKrsslaiedrlhyaskyfeskLPLQATFEFSRDRKSMSVLAGT--GTAQKLFV 543
                    8*********************************5555555555556666666666666665559999*****************6..599***** PP

  Cation_ATPase  78 KGApeiilkrCthv 91 
                    KGApe++l+rC+hv
     KKY19520.1 544 KGAPESVLERCSHV 557
                    ************96 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0044       9.9      18      53 ..     635     670 ..     626     675 .. 0.88
   2 !   28.9   0.6   4.1e-10   9.1e-07     194     247 ..     716     769 ..     713     775 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0044
                  HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCC CS
  Hydrolase_3  18 ektkeaikklkekgikvviATGRslravlpvleelg 53 
                  ++ +e i+k+ke+gi v++ TG +  +++ + +++g
   KKY19520.1 635 PEVAESIRKCKEAGIRVIVITGDNRNTAEAICRQIG 670
                  67899*****************99999999888877 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 4.1e-10
                  HHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GG CS
  Hydrolase_3 194 klakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnn 247
                  kl+  l+ s e v+  GDg ND + L+++++gvAmg +++ +k aAd+v ++ n
   KKY19520.1 716 KLVDLLQSSGEVVAMTGDGVNDAPALKKSDIGVAMGTGTDVAKLAADMVLADDN 769
                  677788999999999**********************************98876 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0     3e-10   6.7e-07      87     188 .]     634     742 ..     597     742 .. 0.79
   2 ?   -2.4   0.0       2.4   5.5e+03     103     128 ..     791     818 ..     764     832 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 3e-10
         HAD  87 dpgalellaahraaGdrvvvvSgglrplvepllaelg....adevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidlee........ 173
                 +p++ e ++++++aG+rv+v++g +r  +e+++++ g     ++v +        +tg+   +++++  e+  aa ++ l+ + e+ + ++        
  KKY19520.1 634 RPEVAESIRKCKEAGIRVIVITGDNRNTAEAICRQIGvfgeNEDVTGK------SFTGR--EFDSLSESEQLEAAQKASLFSRVEPTHKSKlvdllqss 724
                 48***********************************44444444444......99999..66666666555555555777777777777777888888 PP

         HAD 174 ..vvay.GDspsDlpllr 188
                   vva  GD+++D p+l+
  KKY19520.1 725 geVVAMtGDGVNDAPALK 742
                 8888889********996 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.4
         HAD 103 rvvvvSgglrplvepll.aelg.adevl 128
                   +++S+++ ++v ++l a+lg +++++
  KKY19520.1 791 IRYLISSNIGEVVSIFLtAALGmPEALI 818
                 55899************99999766665 PP

>> Phage_holin_3_5  Bacteriophage holin Hol, superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.7   5.9e+03      13      29 ..     129     145 ..     122     160 .. 0.72
   2 ?    0.6   0.0      0.26   5.9e+02      47      70 ..     240     263 ..     232     274 .. 0.86
   3 ?    7.9   0.0    0.0015       3.3      32      71 ..     854     895 ..     850     904 .. 0.84
   4 ?   -2.3   0.1       2.1   4.7e+03       5      19 ..     951     965 ..     948     973 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.7
  Phage_holin_3_5  13 lwllillallggvsgem 29 
                      +  +++l ++ gvs e 
       KKY19520.1 129 ILTILILNAVVGVSQES 145
                      44456778888888874 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.26
  Phage_holin_3_5  47 llrsgasvvcglavillllaagaa 70 
                      +l sg++vv g a+ +++l+ g +
       KKY19520.1 240 ILFSGTTVVTGHATAVVVLTGGST 263
                      5789**********9999998865 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0015
  Phage_holin_3_5  32 adkaglsgwallrrlll..rsgasvvcglavillllaagaal 71 
                       d a ++gw+++r +++    ga+ v g a  ++ ++ g  +
       KKY19520.1 854 RDEALVGGWLFFRYMVIgvYVGAATVFGYAWWFMFYSGGPQI 895
                      68999********98862268***************999765 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 2.1
  Phage_holin_3_5   5 qqalvemplwllill 19 
                       ++l  mplw  ++l
       KKY19520.1 951 SESLLTMPLWKNMIL 965
                      567999****76555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1045 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.58
# Mc/sec: 5464.66
//
Query:       KKY19521.1  [L=807]
Description: putative mannosyl-oligosaccharidealpha-mannosidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.9e-162  540.7   0.0   3.8e-162  540.3   0.0    1.2  1  Glyco_hydro_47  Glycosyl hydrolase family 47


Domain annotation for each model (and alignments):
>> Glyco_hydro_47  Glycosyl hydrolase family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  540.3   0.0  2.1e-166  3.8e-162       1     458 []     137     642 ..     137     642 .. 0.92

  Alignments for each domain:
  == domain 1  score: 540.3 bits;  conditional E-value: 2.1e-166
                     HHHHHHHHHHHHCTTSSEEETTTTEEE-SS..SS-CCHHHHHHHHHHCCHHHHHHHHHHHHHHC----S.SS.EEEHHHHHHHHHHHHHHHHHHH CS
  Glyco_hydro_47   1 afkhswegYkkyAwghDelrPlskkgrdtf.gglgatlvDsLdtllimglkeefeeaveavekkidfdtsdskevsvFEttIRyLGGLlsaydls 94 
                     af  swegY+kyAwg De++P+sk+gr+++ gg+g+++vD+Ldt++im+l++ +++a++++++++++d   ++ev++FEttIR+LGGLlsa++ls
      KKY19521.1 137 AFLISWEGYEKYAWGLDEYHPISKNGRNMVaGGMGWIIVDALDTAMIMNLTSCVKHARDWISTSLHYD--AHHEVNTFETTIRMLGGLLSAHYLS 229
                     6999*************************999************************************..3559********************* PP

                     ................S-HHHHHHHHHHHHHHHHGGGSSTTS---SEEETTT--EE-.STCGCEEEHHHHCSSHHHHHHHHHHHT-CHHHHHHHC CS
  Glyco_hydro_47  95 ...............ekkedvllekAveladrLlpAFdtpsglpvarvnlkkrkaskkerassesvlAelgslslEftrLsqlTgdkkYedlaer 174
                                    +++ed+++ekA++ladr+l+AFdtpsg+p+a++nl+++++  ++++ ++s++Ae+++ +lEf++L++lTg+++Y++++er
      KKY19521.1 230 ttfpdlaplteddvsQPGEDLYIEKATDLADRILGAFDTPSGIPFASFNLNTSTGIPSHADGGASSTAEAATTQLEFKYLAKLTGEPHYWEKVER 324
                     *********************************************************************************************** PP

                     CHHHHHCHCC.HHHTTB-BSEEETTT--EESTEE-SSTTTHHHHHHHHHHHHHCTS--HHHHHHHHHHHHHHHHH.TEEE-TTT..--EEE-EEC CS
  Glyco_hydro_47 175 vtkaleelqektklpglvpikidastgkfvaekislgargDSyYEYllKqylllggeeeqyrkmyeealdaikkhllfrpskkkeddllfvgevt 269
                     v++++++  ++    gl+pi+i +stg+f++e+i+lg+rgDSyYEYl+Kqyl+++++e++y +m++eal+++k++ l+++s+ +  +l++++e++
      KKY19521.1 325 VIEVIDS--NH-MPGGLLPIYIYPSTGNFRGENIRLGSRGDSYYEYLIKQYLQTSKAEPVYLEMWNEALAGVKEY-LITYSEGA--KLTILAERP 413
                     *******..43.488************************************************************.66656666..8******** PP

                     TTCTS.EE-EEEGGGGHHHHHHHHHHHTT-H..............HHHHHHHHHHHHHHHHHHHTSTTS---SEEEE-SS............... CS
  Glyco_hydro_47 270 steegklspeidhLscFlgGllalgakllek..............eedlelAkkltegcvkayeatktglmPEifevkpces............a 338
                     ++ + ++sp++dhL+cF++G++alga+ ++               ee++ lAk+l+++c+++y+at+tgl+PEi++++ ++             +
      KKY19521.1 414 NGLSRDISPKMDHLVCFMPGTIALGATSGRTvaqakadgswtaadEENMVLAKELMKTCWAMYKATPTGLAPEITYFNIDSPpkmyndfktkpvS 508
                     99999**********************996679*********************************************87766666665555331 PP

                     ..S-ECTSSSSEEE-..............GGG--B----HHHHHHHHHHHHH--THHHHHHHHHHHHHHHHCEETT..........EE--ECETT CS
  Glyco_hydro_47 339 eecewneekkdealk.............riedrkyllRPEaiESlfylYritgdekyrevgwemfealekatktes..........gysaledVt 410
                                   +             + +d ++l+RPE++ESl y++ritgde yr++gw+mf+++ k+++             ++++l+  +
      KKY19521.1 509 --------------SsldgsdwrpdidiHGNDVHNLQRPETVESLLYMWRITGDEIYRQWGWDMFRSWVKHSAYPVpvdgdasevyAFTSLDSAN 589
                     ..............123344444445555899****************************************9988889999****888887776 PP

                     SS.....S-EE-S-B-HHHHHTHHHHHHHHC-S-TTT-TTTEEE-TTS-EEE- CS
  Glyco_hydro_47 411 ke.....epekeDemeSFwlaEtlKYlYLlFsdedvlsldeyVfnTeAHplkr 458
                            ++ ++D+meSFwlaEtlKY+YLlFs++++l+ld++V+nTeAH ++r
      KKY19521.1 590 IPdpdkiAAPRRDNMESFWLAETLKYFYLLFSPDELLPLDQVVINTEAHFFPR 642
                     5554555788****************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (807 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.52
# Mc/sec: 4711.42
//
Query:       KKY19522.1  [L=318]
Description: putative wd repeat-containing protein jip5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0015   19.3   1.7      0.074   14.0   0.2    3.1  3  WD40         WD domain, G-beta repeat
     0.0049   17.0   1.9     0.0066   16.6   1.9    1.2  1  YL1          YL1 nuclear protein
  ------ inclusion threshold ------
       0.48    9.7   6.0        0.8    9.0   6.0    1.3  1  NOA36        NOA36 protein
        0.5   10.8   6.8          1    9.8   6.8    1.4  1  Phage_1_1    Bacteriophage 1.1 Protein
       0.61    8.3   5.7       0.84    7.8   5.7    1.1  1  CDC45        CDC45-like protein
        8.8    6.8  13.0         18    5.8  13.0    1.4  1  PBP1_TM      Transmembrane domain of transglycosylase PBP1 at


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       4.1   1.2e+04      13      16 ..      54      57 ..      41      80 .. 0.55
   2 ?    3.2   0.0     0.062   1.9e+02      21      36 ..     176     191 ..     151     192 .. 0.68
   3 !   14.0   0.2   2.5e-05     0.074      10      37 ..     207     235 ..     199     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.1
                EEEE CS
        WD40 13 vtsl 16
                 +sl
  KKY19522.1 54 LSSL 57
                4444 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.062
                 TSSEEEEE.ETTSEEEE CS
        WD40  21 dgawlasG.sdDgtvri 36 
                 +++++a+G + Dg++++
  KKY19522.1 176 EHKLVATGlG-DGKIKF 191
                 345599**88.****96 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 2.5e-05
                 SSS...EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  10 Hss...vtslafspdgawlasGsdDgtvriW 37 
                 H+    vt+l+f+  g+++ sG+   tv+iW
  KKY19522.1 207 HDEiegVTALSFDVGGRLI-SGG-GSTVKIW 235
                 6224459***********7.7**.******* PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.9   2.2e-06    0.0066      49      90 ..     258     298 ..     206     308 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.2e-06
                 xxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  49 sDsdfdsdeedee....sdeeedeeegekelerqerkkrkkekkkr 90 
                  Ds  d+d++d +    sd+ +d++++eke +   rk+rk   +kr
  KKY19522.1 258 ADS--DDDDDDADavndSDAADDNSDEEKEGKTNGRKRRK---RKR 298
                 222..23333333456677777778888887766666662...222 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   6.0   0.00027       0.8     267     301 ..     252     286 ..     231     293 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00027
       NOA36 267 ddeddegdedddddddeedddeeeddedeeeeeee 301
                 ++++ e+d+dddddd +  +d++  d++++ee+e 
  KKY19522.1 252 SKRSAEADSDDDDDDADAVNDSDAADDNSDEEKEG 286
                 44555555555555544444444444444443333 PP

>> Phage_1_1  Bacteriophage 1.1 Protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   6.8   0.00034         1      19      42 ..     281     304 ..     273     305 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00034
   Phage_1_1  19 feveErkdkgkKrnKpqRdrssKR 42 
                  e +E+k+ g+Kr K +R+r + R
  KKY19522.1 281 DEEKEGKTNGRKRRKRKRGRGKDR 304
                 3557****************9877 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   5.7   0.00028      0.84     135     176 ..     257     298 ..     233     309 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00028
       CDC45 135 edeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksd 176
                 e ++++++dd d  ++++  +d++dee++++++++kr+++++
  KKY19522.1 257 EADSDDDDDDADAVNDSDAADDNSDEEKEGKTNGRKRRKRKR 298
                 222344444444455555555555555555555555553222 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  13.0    0.0062        18      31      70 ..     258     297 ..     248     303 .. 0.48

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0062
     PBP1_TM  31 rdddyddeyddeedDdddddeeeevprkgkkkkpprkkrr 70 
                  d d dd+  d  +D d  d++++  + gk++  +r+kr+
  KKY19522.1 258 ADSDDDDDDADAVNDSDAADDNSDEEKEGKTNGRKRRKRK 297
                 2333333345556666655555555555554443444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.53
# Mc/sec: 1804.87
//
Query:       KKY19523.1  [L=785]
Description: putative early growth response protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-09   38.3  12.8    9.4e-05   22.7   1.6    2.6  2  zf-C2H2       Zinc finger, C2H2 type
    3.5e-08   33.5   8.4    2.3e-07   30.9   2.5    2.6  2  zf-H2C2_2     Zinc-finger double domain
    2.4e-07   31.0  10.5    0.00021   21.9   0.8    2.8  2  zf-C2H2_4     C2H2-type zinc finger
    6.2e-07   29.5   5.6     0.0071   16.6   0.1    2.5  2  zf-C2H2_jaz   Zinc-finger double-stranded RNA-binding
    1.7e-06   27.3   0.2    3.8e-06   26.1   0.2    1.6  1  Fungal_trans  Fungal specific transcription factor domain
     0.0011   19.3   7.8       0.03   14.7   1.1    2.6  2  zf-met        Zinc-finger of C2H2 type
  ------ inclusion threshold ------
      0.054   12.7   0.0      0.088   12.0   0.0    1.3  1  NAD_kinase    ATP-NAD kinase
      0.061   13.3   9.6       0.59   10.2   0.5    2.4  2  zf-C2H2_6     C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   3.9   2.1e-07   0.00046       2      23 .]      10      31 ..      10      31 .. 0.98
   2 !   22.7   1.6   4.2e-08   9.4e-05       1      23 []      37      59 ..      37      59 .. 0.98

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.1e-07
                EETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2  2 kCpdCgksFkrksnLkrHirtH 23
                kC+ C+k+F   ++L+rHir+H
  KKY19523.1 10 KCHLCDKVFGKTEHLERHIRSH 31
                7********************9 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 4.2e-08
                EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                + C++C ksF+r++ L rH r+H
  KKY19523.1 37 FNCNVCQKSFSRNDTLLRHWRSH 59
                89********************9 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.4     0.011        25      15      25 ..       9      19 ..       2      20 .. 0.80
   2 !   30.9   2.5     1e-10   2.3e-07       1      25 [.      23      47 ..      23      48 .. 0.95

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.011
   zf-H2C2_2 15 yeCplCdkaFk 25
                 +C lCdk+F 
  KKY19523.1  9 RKCHLCDKVFG 19
                59********7 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 1e-10
   zf-H2C2_2  1 nLrrHirkHtgekpyeCplCdkaFk 25
                +L+rHir+Ht++kp++C +C k+F+
  KKY19523.1 23 HLERHIRSHTKDKPFNCNVCQKSFS 47
                79**********************8 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   3.0   6.5e-05      0.15       2      23 ..      10      31 ..       9      32 .. 0.93
   2 !   21.9   0.8   9.2e-08   0.00021       1      23 [.      37      59 ..      37      60 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.5e-05
   zf-C2H2_4  2 kCpiCgksFsskkaLlrHlkth 23
                kC++C+k+F   ++L rH+++h
  KKY19523.1 10 KCHLCDKVFGKTEHLERHIRSH 31
                8********99999*******9 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 9.2e-08
   zf-C2H2_4  1 fkCpiCgksFsskkaLlrHlkth 23
                f C +C+ksFs++++LlrH+++h
  KKY19523.1 37 FNCNVCQKSFSRNDTLLRHWRSH 59
                79********************9 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   1.5   1.6e-05     0.036       3      24 ..      10      31 ..       9      33 .. 0.94
   2 !   16.6   0.1   3.2e-06    0.0071       2      24 ..      37      59 ..      36      60 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
                 BBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz  3 YCvlCdKyFksenaldnHlkSK 24
                  C lCdK F + + l+ H++S+
   KKY19523.1 10 KCHLCDKVFGKTEHLERHIRSH 31
                 5********************6 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 3.2e-06
                 CBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz  2 fYCvlCdKyFksenaldnHlkSK 24
                 f C +C+K F+   +l  H++S+
   KKY19523.1 37 FNCNVCQKSFSRNDTLLRHWRSH 59
                 99********************7 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.2   1.7e-09   3.8e-06       2     204 ..     317     514 ..     316     550 .. 0.74

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.7e-09
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLl 98 
                    +ffs fhp fpi h p+f p             +pll +a+  +Gal++ +++   +  +           l+ e  + + +  ++ ++ ++q+ l
    KKY19523.1 317 TTFFSRFHPVFPIAHIPTFQPAE-----------KPLLSFAMATVGALSVFEPEVAAEVFAQLQT--S----LSTEW-QRDVAAAQAIDFVVIQAAL 395
                   68*********************...........*******************998844444422..2....22221.12334467778999**999 PP

  Fungal_trans  99 llelyektssdralher...hhgvavrlarslgLhrnpsyvgkks............lwklweeeaesrrRlwwaaFylDktialklGrppllddsq 180
                   l  l+   s++++ +     +h    + a s+g  + ++     +            +w+ w+  +e+r R+  +  +lD  +a  ++rp  +  + 
    KKY19523.1 396 LSDLFTVLSGSTENVLHvesTHAKLATWAASIGSIDMQETLALLNtenmptgealehIWRAWVQ-KEERIRVLHGLRILDAELADLFRRPHSITFDV 491
                   9999999999766666655644444444444443333332222224457777889999*****9.9999********************99888888 PP

  Fungal_trans 181 inlpLPcddddlwesddaseetlv 204
                    +lp    +d l ++++a+e+  +
    KKY19523.1 492 NSLPQMAPED-LFQAWSATEWLSL 514
                   8888777777.7777777776655 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.8    0.0018         4       3      23 ..      11      31 ..       9      32 .. 0.93
   2 !   14.7   1.1   1.3e-05      0.03       1      23 [.      37      59 ..      37      59 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0018
      zf-met  3 CelCnvtfnsesqlksHlqGK 23
                C lC+++f    +l+ H +++
  KKY19523.1 11 CHLCDKVFGKTEHLERHIRSH 31
                *******************98 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.3e-05
      zf-met  1 fyCelCnvtfnsesqlksHlqGK 23
                f C++C+++f+   +l  H +++
  KKY19523.1 37 FNCNVCQKSFSRNDTLLRHWRSH 59
                67******************996 PP

>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.9e-05     0.088      97     132 ..     334     369 ..     330     432 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.9e-05
                 HHHHCT-EEEEEESSS--SS-SEEGGGHHHHHHHHH CS
  NAD_kinase  97 llqkaeiPvlgvnaGvkgfltefepeaaaellekll 132
                 ++q+ae P+l++ ++++g+l++fepe aae+ ++l 
  KKY19523.1 334 TFQPAEKPLLSFAMATVGALSVFEPEVAAEVFAQLQ 369
                 589999**********************99998875 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   3.1    0.0036       8.1       3      24 ..      10      31 ..       9      33 .. 0.90
   2 ?   10.2   0.5   0.00026      0.59       2      24 ..      37      59 ..      37      59 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0036
   zf-C2H2_6  3 eCsvCsksFpslqaLggHkksH 24
                +C+ C+k+F++   L+ H +sH
  KKY19523.1 10 KCHLCDKVFGKTEHLERHIRSH 31
                8*********999999999999 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00026
   zf-C2H2_6  2 heCsvCsksFpslqaLggHkksH 24
                ++C+vC ksF+  + L  H +sH
  KKY19523.1 37 FNCNVCQKSFSRNDTLLRHWRSH 59
                89********9877777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.52
# Mc/sec: 4509.19
//
Query:       KKY19524.1  [L=544]
Description: putative at hook domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.047   13.0   0.0      0.076   12.3   0.0    1.2  1  LcrV         V antigen (LcrV) protein
      0.093   13.6   0.0      0.093   13.6   0.0    2.5  3  Ima1_N       Ima1 N-terminal domain
       0.19   12.1   1.8        0.6   10.5   1.8    1.8  1  PP_kinase_N  Polyphosphate kinase N-terminal domain


Domain annotation for each model (and alignments):
>> LcrV  V antigen (LcrV) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.3e-05     0.076     190     250 ..     481     540 ..     471     543 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.3e-05
                 S--TT-GGGCT-SSHHHHHTSHHHHHHTTS--EEEEETTCEEEE--HHHHHT-SSSTT--- CS
        LcrV 190 sinlldkkkygysdeeifkksaeykllekisqttiqvdgsekkivsikdflesenkrsgal 250
                 s++  ++++ gysd e      ey ll+k  + ++ +dgs    v ik+f +  ++  gal
  KKY19524.1 481 SMEHQNRNRRGYSDSEGVADGLEY-LLKKTKEDVVGIDGSGGTFVRIKEFNGILERVIGAL 540
                 566678999***************.8999999******************99888888887 PP

>> Ima1_N  Ima1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.8   1.1e+04      63      63 ..     109     109 ..      84     159 .. 0.52
   2 ?   -0.7   0.2      0.41   2.4e+03      34      71 ..     167     203 ..     163     272 .. 0.56
   3 ?   13.6   0.0   1.5e-05     0.093      60     124 ..     342     406 ..     313     411 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.8
      Ima1_N  63 s 63 
                 +
  KKY19524.1 109 T 109
                 1 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.41
      Ima1_N  34 dGdindeipe.qeeeslneaakkaaaskskskseeaess 71 
                  G+++d+i + +++ s n ++k+++++ks  ++ +++++
  KKY19524.1 167 SGQVEDSIMSnMSTVSVN-TRKARRKRKSIGQQ-RKKKR 203
                 566666554303333333.22222222222222.11111 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 1.5e-05
      Ima1_N  60 kskskseeaessssssllCskClknqelkvsklaeylpkededdpeyeekeealeeykkeleerY 124
                 ++ ++ + +++++s +++ + C +  e +vskl++y+p+++++ ++  ++++a+e + ++l+ r+
  KKY19524.1 342 SHPRRPQLSSNPNSVDVISQLCRETIESVVSKLSSYTPSNNQSRSSLLRRQKAIEVFGENLDVRF 406
                 2222225578899999**********************989999999999999*******99887 PP

>> PP_kinase_N  Polyphosphate kinase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.8    0.0001       0.6      21      96 ..     383     460 ..     380     466 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0001
                  -TTS-HHHHHHHHHHHHHHHH.HHH.HHCCHHHHH.HTT-..-----------HHHHHHHHHHHHHHHHHHHHHHTHH CS
  PP_kinase_N  21 dervplleRlkFlaIfssNlD.EFf.mvRvaslkrqleakvekksedgltpeeqlkaiseeveelveeqekileeell 96 
                  ++r  ll R k + +f +NlD  Ff m +v + k  +ea+v+k++++++  ++++ +i+++ ee+  + +++ +++l 
   KKY19524.1 383 QSRSSLLRRQKAIEVFGENLDvRFFeMSQVLDTKTLIEAQVKKSKREKMALQNEWLEIRRQREEIALKCDDVRRRNLE 460
                  567899***************546636799**********9999999************9999999888888766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3600.83
//
Query:       KKY19525.1  [L=323]
Description: hypothetical protein UCRPC4_g04508 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0023   17.6   0.2     0.0038   16.9   0.2    1.2  1  DUF943           Enterobacterial putative membrane protein (D
  ------ inclusion threshold ------
      0.018   15.0   0.0       0.37   10.8   0.0    2.2  2  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
      0.045   13.8   0.2       0.11   12.5   0.2    1.8  1  Mitochondr_Som1  Mitochondrial export protein Som1
       0.18   11.9   1.8       0.76    9.9   0.1    2.3  2  DUF3105          Protein of unknown function (DUF3105)


Domain annotation for each model (and alignments):
>> DUF943  Enterobacterial putative membrane protein (DUF943)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2   8.5e-07    0.0038      36     116 ..      80     160 ..      75     172 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 8.5e-07
      DUF943  36 hqrnsysssilVenlpltdkgkIkWwlenkselkekYkipksasdglysitiwdfgdGykeegdsdrlCFedmktkenCId 116
                 h  ++y+ + +Ve++ l ++++I+  +en+++l +k  + + a ++ +  + ++ gd  ++      +C+++ k+ ++C +
  KKY19525.1  80 HLWKTYTPQAAVEKFGLDTTQRIHEDHENRRQLIHKAALENCAVEDELFKNCFHTGDWKQRAYARATMCYQEEKAFNRCYQ 160
                 555779999************************************************999999999*************76 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.042   1.9e+02      32      62 ..      93     126 ..      71     134 .. 0.71
   2 ?   10.8   0.0   8.2e-05      0.37      94     142 ..     260     309 ..     202     314 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.042
                     H...HHHHHHHHHSSBTTTBTT----TTEEEES- CS
  NAD_Gly3P_dh_N  32 e...elieeineehenvkyLpgiklpenlvattd 62 
                     +   +++++i+e+hen + L + +  en  ++++
      KKY19525.1  93 KfglDTTQRIHEDHENRRQLIHKAALENCAVEDE 126
                     1555899***********9988776666666555 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 8.2e-05
                     -TT-EEEE---SEET.TTEEHHHHHHHHH-S--.EEEEESS--HHHHHTT CS
  NAD_Gly3P_dh_N  94 kkkailvsliKGieegtlkllsevieeelkeek.vavlsGpslAeEvakg 142
                     ++  + v  +KG+ ++ ++ ++e  ++++++++ ++ + Gp++A+ +a++
      KKY19525.1 260 AAWRAEVAQSKGMARELTEYMQEHHQNKIERQEtLSRIFGPTVAKFIADD 309
                     444455669**********************999**********988865 PP

>> Mitochondr_Som1  Mitochondrial export protein Som1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   2.5e-05      0.11      15      82 ..     100     167 ..      86     210 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.5e-05
  Mitochondr_Som1  15 ervqvkeklekkrke.eeveLkkCeLkelvQyeCtfkeskkeekekk.iiClpvkRlfrrCkekekglnv 82 
                      +r+  +e++e++r+  ++++L++C++ + +  +C  +++ k+++ ++ ++C+  ++ f rC + + ++ v
       KKY19525.1 100 QRI--HEDHENRRQLiHKAALENCAVEDELFKNCFHTGDWKQRAYARaTMCYQEEKAFNRCYQLQAKFLV 167
                      344..444434444414445*******9999***98888877666667*************776666554 PP

>> DUF3105  Protein of unknown function (DUF3105)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.3      0.11   5.1e+02       4      57 ..      29      88 ..      27     116 .. 0.65
   2 ?    9.9   0.1   0.00017      0.76      58     124 ..     227     288 ..     219     294 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.11
     DUF3105  4 agesvaYkqspPssGphrptw.....ancgekvY.dkpvpnenaVHnLehGavvllYdpk 57
                ++++ +Yk++pP   ++ +++      + ++++Y ++p+p+e +  +    + + +Y p+
  KKY19525.1 29 QQQPQKYKTTPPPAPEFVKKPkvevdFPDTNRIYdERPLPKESLFQDGRYAHLWKTYTPQ 88
                567788888888776665543111114667788866677777777777777777777776 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00017
     DUF3105  58 lpaeqvekLkklvkaalaeksyvlvsPyedldkpvalsaWgrqlkldsvddervkeFiekyaqktap 124
                 +p+++  k+ + v++++++ s   + Pye   +++a++aW++++  ++    +++e++++++q+ + 
  KKY19525.1 227 APDAASLKVPHGVEKKMKR-SLSEIPPYE---RELAVAAWRAEVAQSKGMARELTEYMQEHHQN-KI 288
                 5555555555555544444.223344554...59***************************998.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2393.97
//
Query:       KKY19526.1  [L=606]
Description: putative c2h2 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-13   50.6  11.4    1.1e-06   28.8   0.5    2.7  2  zf-C2H2       Zinc finger, C2H2 type
    1.8e-08   34.5   8.8     0.0015   19.2   0.2    2.8  2  zf-C2H2_4     C2H2-type zinc finger
    1.5e-06   28.4   3.6     0.0004   20.7   0.3    2.7  2  zf-met        Zinc-finger of C2H2 type
    6.9e-05   23.0   4.7      0.026   14.8   1.7    2.6  2  zf-C2H2_jaz   Zinc-finger double-stranded RNA-binding
    9.9e-05   22.6   6.0    9.9e-05   22.6   6.0    2.9  3  zf-H2C2_2     Zinc-finger double domain
     0.0004   20.3   7.3       0.15   12.1   0.5    2.6  2  zf-C2H2_6     C2H2-type zinc finger
  ------ inclusion threshold ------
      0.012   15.2   3.7       0.79    9.4   0.2    2.4  2  zf_C2H2_ZHX   Zinc-fingers and homeoboxes C2H2 finger domain
      0.046   13.3   1.5        2.7    7.7   0.1    2.8  2  zf_UBZ        Ubiquitin-Binding Zinc Finger
      0.067   13.1   2.8       0.12   12.3   0.2    2.4  2  zf-LYAR       LYAR-type C2HC zinc finger
      0.098   12.8   1.2       0.27   11.4   1.2    1.7  1  zf-UBR        Putative zinc finger in N-recognin (UBR box)
       0.23   11.7   4.2       0.46   10.8   4.2    1.5  1  LIM           LIM domain
       0.42   11.3   2.8         15    6.3   1.0    2.5  2  zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
       0.52   10.2   3.1        1.4    8.8   0.5    2.3  2  zf-trcl       Probable zinc-ribbon domain
       0.55   10.1   2.9         15    5.5   0.2    2.4  2  TFIIS_C       Transcription factor S-II (TFIIS)
       0.58   10.3   3.4        6.6    7.0   0.4    2.5  3  Zn-ribbon_8   Zinc ribbon domain
       0.74   10.2   4.6        7.3    7.0   0.8    2.4  2  zf-C2H2_2     C2H2 type zinc-finger (2 copies)
        1.4    8.8   5.2        6.2    6.7   0.0    2.4  2  zf-C2H2_11    zinc-finger C2H2-type
        1.6    9.2   6.8    1.4e+02    3.1   6.7    2.6  1  zf-C2HE       C2HE / C2H2 / C2HC zinc-binding finger
        3.2    7.8   9.3        6.2    6.9   3.3    2.4  2  zf-BED        BED zinc finger
        5.4    7.0   7.2        4.9    7.2   2.9    2.3  2  zf-C2HC_2     zinc-finger of a C2HC-type


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   4.6   1.4e-08   1.3e-05       1      23 []     472     495 ..     472     495 .. 0.98
   2 !   28.8   0.5   1.2e-09   1.1e-06       1      23 []     501     523 ..     501     523 .. 0.98

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.4e-08
                 EEETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                 ++C++C+++F+r+++LkrH+r+ H
  KKY19526.1 472 FVCNICNRRFRRQEHLKRHYRSlH 495
                 89*******************999 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 1.2e-09
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 ++C+dCgk+F+r++nL +H rtH
  KKY19526.1 501 FECTDCGKKFSRSDNLAQHARTH 523
                 89********************9 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   3.4   5.2e-06    0.0047       1      24 []     472     495 ..     472     495 .. 0.96
   2 !   19.2   0.2   1.7e-06    0.0015       1      23 [.     501     523 ..     501     524 .. 0.97

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.2e-06
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkthH 24 
                 f C iC+++F+++++L+rH ++ H
  KKY19526.1 472 FVCNICNRRFRRQEHLKRHYRSLH 495
                 89*******************988 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.7e-06
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 f+C+ Cgk Fs++++L +H +th
  KKY19526.1 501 FECTDCGKKFSRSDNLAQHARTH 523
                 89********************9 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.3   4.5e-07    0.0004       1      22 [.     472     493 ..     472     494 .. 0.96
   2 !    8.1   0.3    0.0042       3.7       1      21 [.     501     521 ..     501     523 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 4.5e-07
      zf-met   1 fyCelCnvtfnsesqlksHlqG 22 
                 f C++Cn++f  + +lk H+++
  KKY19526.1 472 FVCNICNRRFRRQEHLKRHYRS 493
                 78******************98 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0042
      zf-met   1 fyCelCnvtfnsesqlksHlq 21 
                 f+C  C ++f+   +l +H +
  KKY19526.1 501 FECTDCGKKFSRSDNLAQHAR 521
                 79*****************65 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.7   2.9e-05     0.026       2      23 ..     472     493 ..     471     497 .. 0.92
   2 !    8.6   0.1    0.0025       2.3       2      22 ..     501     521 ..     500     524 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.9e-05
                  CBBTTTTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkS 23 
                  f C +C++ F  ++ l+ H++S
   KKY19526.1 472 FVCNICNRRFRRQEHLKRHYRS 493
                  78*******************9 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0025
                  CBBTTTTBBBSSHHHHHCCTT CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlk 22 
                  f+C  C K F+ + +l +H +
   KKY19526.1 501 FECTDCGKKFSRSDNLAQHAR 521
                  99****************955 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.27   2.4e+02      13      25 ..     470     482 ..     465     483 .. 0.81
   2 !   22.6   6.0   1.1e-07   9.9e-05       1      25 [.     486     511 ..     486     512 .. 0.94
   3 ?   -1.9   0.1         6   5.4e+03       1       9 [.     515     523 ..     515     524 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.27
   zf-H2C2_2  13 kpyeCplCdkaFk 25 
                 k + C  C+ +F 
  KKY19526.1 470 KTFVCNICNRRFR 482
                 569*******995 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 1.1e-07
   zf-H2C2_2   1 nLrrHirk.HtgekpyeCplCdkaFk 25 
                 +L+rH r+ Ht +kp+eC  C+k+F+
  KKY19526.1 486 HLKRHYRSlHTHDKPFECTDCGKKFS 511
                 79*****77****************8 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 6
   zf-H2C2_2   1 nLrrHirkH 9  
                 nL +H r+H
  KKY19526.1 515 NLAQHARTH 523
                 7999****9 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   1.2   0.00041      0.37       2      20 ..     472     490 ..     471     495 .. 0.78
   2 !   12.1   0.5   0.00017      0.15       2      24 ..     501     523 ..     501     524 .. 0.97

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00041
   zf-C2H2_6   2 heCsvCsksFpslqaLggH 20 
                 ++C++C+++F+ +  L  H
  KKY19526.1 472 FVCNICNRRFRRQEHLKRH 490
                 99*********99666555 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00017
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkksH 24 
                 +eC+ C+k F+  ++L  H ++H
  KKY19526.1 501 FECTDCGKKFSRSDNLAQHARTH 523
                 8******************9999 PP

>> zf_C2H2_ZHX  Zinc-fingers and homeoboxes C2H2 finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.7    0.0063       5.6       4      29 ..     471     496 ..     466     501 .. 0.89
   2 ?    9.4   0.2   0.00088      0.79       4      29 ..     500     524 ..     497     536 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0063
  zf_C2H2_ZHX   4 sFvCveCsfsakkfegLalHNarsHp 29 
                  +FvC  C+   ++ e L+ H    H+
   KKY19526.1 471 TFVCNICNRRFRRQEHLKRHYRSLHT 496
                  7*******************999986 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00088
  zf_C2H2_ZHX   4 sFvCveCsfsakkfegLalHNarsHp 29 
                   F C++C+    + ++La+H ar+H 
   KKY19526.1 500 PFECTDCGKKFSRSDNLAQH-ARTHG 524
                  599*****************.77774 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.2     0.045        41       2      20 ..     471     486 ..     470     487 .. 0.80
   2 ?    7.7   0.1     0.003       2.7       3      20 ..     501     519 ..     499     520 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.045
      zf_UBZ   2 tylCerCgkeipeselqEH 20 
                 t++C  C++++    +qEH
  KKY19526.1 471 TFVCNICNRRFR---RQEH 486
                 8********997...4555 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.003
      zf_UBZ   3 ylCerCgkeipes.elqEH 20 
                 + C +Cgk+++ s  l++H
  KKY19526.1 501 FECTDCGKKFSRSdNLAQH 519
                 78*********99777777 PP

>> zf-LYAR  LYAR-type C2HC zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.85   7.6e+02       2      15 ..     473     486 ..     472     491 .. 0.71
   2 ?   12.3   0.2   0.00014      0.12       1      18 [.     501     519 ..     501     521 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.85
     zf-LYAR   2 sCiDCsktFdgdey 15 
                  C  C+ +F+++e+
  KKY19526.1 473 VCNICNRRFRRQEH 486
                 5666******9654 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00014
     zf-LYAR   1 fsCiDCsktFdg.deykaH 18 
                 f C DC+k+F++ d+  +H
  KKY19526.1 501 FECTDCGKKFSRsDNLAQH 519
                 77**********8888888 PP

>> zf-UBR  Putative zinc finger in N-recognin (UBR box)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.2    0.0003      0.27      23      59 ..     473     510 ..     463     518 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0003
      zf-UBR  23 tsviCeeCfkaskHeghelvelstkrng.gvCdCGdee 59 
                  + iC++ f++++H + ++ +l+t+++   + dCG++ 
  KKY19526.1 473 VCNICNRRFRRQEHLKRHYRSLHTHDKPfECTDCGKKF 510
                 58899999******9999989999999956669**975 PP

>> LIM  LIM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.2   0.00051      0.46       1      42 [.     474     517 ..     473     523 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00051
                 -TTT--BE-TTTEEEE.ETTEEEETTTSB-TTT-SB-CTT..CE CS
         LIM   1 CagCnkkiadrelvlk.aldkvwHeeCFtCsdCqkeLkegs.fy 42 
                 C+ Cn++++++e + +  +  + H + F C+dC+k++++ + ++
  KKY19526.1 474 CNICNRRFRRQEHLKRhYRSLHTHDKPFECTDCGKKFSRSDnLA 517
                 999******77766551555667**************9987555 PP

>> zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   1.0     0.017        15      91     125 ..     461     495 ..     419     497 .. 0.69
   2 ?    3.8   0.0       0.1        90      33      54 ..     501     522 ..     496     550 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.017
  zf-C2H2_3rep  91 nnsenesgvrkfvcrfcGlkfdllpdlGrhhqaah 125
                   ++s  e+ ++ fvc +c  +f     l rh+++ h
    KKY19526.1 461 KQSLTEDPTKTFVCNICNRRFRRQEHLKRHYRSLH 495
                   34445667889999999999999999999998877 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.1
  zf-C2H2_3rep  33 lqcipcgshfgnaeelwlhvls 54 
                   ++c  cg +f+ +++l +h  +
    KKY19526.1 501 FECTDCGKKFSRSDNLAQHART 522
                   5788999999999999988755 PP

>> zf-trcl  Probable zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.42   3.8e+02       3      14 ..     470     481 ..     469     491 .. 0.92
   2 ?    8.8   0.5    0.0016       1.4       2      14 ..     498     510 ..     497     513 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.42
     zf-trcl   3 ktltCkdCgaef 14 
                 kt++C+ C++ f
  KKY19526.1 470 KTFVCNICNRRF 481
                 89******9988 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0016
     zf-trcl   2 DktltCkdCgaef 14 
                 Dk++ C+dCg++f
  KKY19526.1 498 DKPFECTDCGKKF 510
                 9**********98 PP

>> TFIIS_C  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.2     0.017        15      23      39 .]     466     482 ..     462     482 .. 0.91
   2 ?    4.7   0.2     0.031        28      29      38 ..     501     510 ..     499     511 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.017
     TFIIS_C  23 EpmtvfykCtkCghrWr 39 
                 E +t  ++C+ C+ r+r
  KKY19526.1 466 EDPTKTFVCNICNRRFR 482
                 78999**********98 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.031
     TFIIS_C  29 ykCtkCghrW 38 
                 ++Ct+Cg+++
  KKY19526.1 501 FECTDCGKKF 510
                 79******98 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2      0.15   1.4e+02       2      37 ..     468     482 ..     461     485 .. 0.59
   2 ?    6.1   3.6     0.014        13       3      38 ..     469     512 ..     468     513 .. 0.72
   3 ?    7.0   0.4    0.0073       6.6       6      17 ..     501     512 ..     500     523 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.15
  Zn-ribbon_8   2 PiYeYrCeeCghefevlqsisdapltaCPeCgsevr 37 
                  P+  + C+ C+++f                     r
   KKY19526.1 468 PTKTFVCNICNRRF---------------------R 482
                  33345666666666.....................4 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.014
  Zn-ribbon_8   3 iYeYrCeeCghefe.......vlqsisdaplta.CPeCgsevrr 38 
                  +  + C+ C+++f        + +s +  +++  C +Cg++  r
   KKY19526.1 469 TKTFVCNICNRRFRrqehlkrHYRSLHTHDKPFeCTDCGKKFSR 512
                  55688999999999888888766666644555569999987766 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0073
  Zn-ribbon_8   6 YrCeeCghefev 17 
                  ++C++Cg++f +
   KKY19526.1 501 FECTDCGKKFSR 512
                  89********85 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.8    0.0082       7.3      46      73 ..     467     494 ..     455     500 .. 0.80
   2 ?    4.2   0.5     0.062        55      50      73 ..     500     523 ..     495     528 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0082
   zf-C2H2_2  46 kieekleClyCekefkslealreHmkkk 73 
                   ++++ C +C+++f+ +e+l+ H ++ 
  KKY19526.1 467 DPTKTFVCNICNRRFRRQEHLKRHYRSL 494
                 5556799*****************9864 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.062
   zf-C2H2_2  50 kleClyCekefkslealreHmkkk 73 
                  +eC  C+k+f+  ++l +H +++
  KKY19526.1 500 PFECTDCGKKFSRSDNLAQHARTH 523
                 579*****************9876 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   2.4      0.18   1.6e+02       4      27 ..     471     494 ..     469     495 .. 0.86
   2 ?    6.7   0.0    0.0069       6.2       6      23 ..     502     519 ..     500     522 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.18
  zf-C2H2_11   4 tcqCleCGlcftSqlsLsRHlfIv 27 
                 t+ C  C + f  q  L+RH +  
  KKY19526.1 471 TFVCNICNRRFRRQEHLKRHYRSL 494
                 677999**************8755 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0069
  zf-C2H2_11   6 qCleCGlcftSqlsLsRH 23 
                  C++CG +f+ +  L  H
  KKY19526.1 502 ECTDCGKKFSRSDNLAQH 519
                 5*********88888877 PP

>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   6.7      0.15   1.4e+02      23      49 ..     486     512 ..     445     523 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.15
     zf-C2HE  23 slseeqskelilktpLkCtrCganfgn 49 
                 +l+++  +    ++p++Ct Cg++f +
  KKY19526.1 486 HLKRHYRSLHTHDKPFECTDCGKKFSR 512
                 333333333557899999999977765 PP

>> zf-BED  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   4.3     0.055        49      16      43 ..     471     495 ..     465     498 .. 0.86
   2 ?    6.9   3.3    0.0069       6.2       4      38 ..     488     523 ..     485     523 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.055
                 --EETTTTEE----SSTHHHHHHHHHS- CS
      zf-BED  16 kavCryCgkilsrgggttnLkrHLrrkH 43 
                   vC++C++ + r     +LkrH r+ H
  KKY19526.1 471 TFVCNICNRRFRRQ---EHLKRHYRSLH 495
                 569**********9...9*****88777 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0069
                 TSSS----GGSS--EETTTTEE----.SSTHHHHHH CS
      zf-BED   4 WkyftpvslkeqkavCryCgkilsrg.ggttnLkrH 38 
                 +++++ + + ++  +C  Cgk++sr+ +   + ++H
  KKY19526.1 488 KRHYRSLHTHDKPFECTDCGKKFSRSdNLAQHARTH 523
                 789999999****************95555555555 PP

>> zf-C2HC_2  zinc-finger of a C2HC-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   2.9    0.0055       4.9       2      21 ..     471     491 ..     470     493 .. 0.84
   2 ?    1.8   0.1      0.27   2.4e+02       5      21 ..     503     520 ..     501     522 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0055
   zf-C2HC_2   2 lvpCpkCgRsF.npdrlekHe 21 
                 +  C +C+R+F  ++ l +H 
  KKY19526.1 471 TFVCNICNRRFrRQEHLKRHY 491
                 567********9999999995 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.27
   zf-C2HC_2   5 CpkCgRsF.npdrlekHe 21 
                 C  Cg +F  +d l+ H 
  KKY19526.1 503 CTDCGKKFsRSDNLAQHA 520
                 666*****9999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       988  (0.0551063); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.58
# Mc/sec: 3156.04
//
Query:       KKY19527.1  [L=276]
Description: putative phosphatidylethanolamine-binding protein pebp [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-15   55.7   0.2    8.5e-15   55.2   0.2    1.2  1  PBP       Phosphatidylethanolamine-binding protein


Domain annotation for each model (and alignments):
>> PBP  Phosphatidylethanolamine-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.2   4.8e-19   8.5e-15      11     125 ..      63     192 ..      38     199 .. 0.69

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 4.8e-19
                 GS-EEEEE.....S--TTSSEEEEEEEETTSCCTCT.T...EEEEEEEEEETTSSEE-TTC..EE-B-TTSSCCCCS---B--STTS..EEEEEEEE.. CS
         PBP  11 tsPplsws.....dvpegtksyalvviDpDapkvse.t...flHwvvtnipasvtslpega..vqgknslgeesesgYlgpcPpkgdgkHrYvflly.. 96 
                 ++P+l+++     ++ + + sy+++++DpDap+ ++ t   +lHw++ n++ + t+ ++    ++++n+  +    +Y  p+Pp  +  HrY++  +  
  KKY19527.1  63 QQPALAVDtnkfeSLANYNGSYVVLMVDPDAPTPQNaTsrfILHWLQSNMTQTDTTSSK-LsgRELTNATDA--FVPYANPAPPTDSDAHRYILYAFvq 158
                 4488887777666555679************7444453578*********955544333.134555555554..56***********99******9988 PP

                 ..EESSSG--.BGSS.-SHHHHHHH..HCTTEEEE CS
         PBP  97 ..aldveald.lkag.ftraelgaa..iaghvlak 125
                   ++++++ + +++  ++r+ ++    ia++ l++
  KKY19527.1 159 asNFTIPE-AfQDFSsTNRSSFNLTqfIADAGLGT 192
                 76666665.33455533344444333244666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 1729.69
//
Query:       KKY19528.1  [L=448]
Description: putative cation diffusion facilitator 10 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-24   85.3  15.4    5.4e-24   85.0  15.4    1.1  1  Cation_efflux   Cation efflux family
    3.3e-06   27.1   0.0    5.9e-06   26.3   0.0    1.4  1  ZT_dimer        Dimerisation domain of Zinc Transporter
  ------ inclusion threshold ------
      0.044   13.9   0.3       0.11   12.7   0.3    1.6  1  Alpha-mann_mid  Alpha mannosidase middle domain
        0.1   12.7   0.3        0.2   11.8   0.3    1.4  1  BCNT            Bucentaur or craniofacial development


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0  15.4   1.2e-27   5.4e-24       2     198 ..     162     352 ..     161     353 .. 0.93

  Alignments for each domain:
  == domain 1  score: 85.0 bits;  conditional E-value: 1.2e-27
  Cation_efflux   2 ilsllanlilalvelivglltnSlalladafhslsdlvsllllllalklsrkppderfpfGygrlevlgalvsgllllglavfllleaiqklikeg 97 
                    +++++an++l++++++v +lt Sl++la  + + +d++s+ +++ + kl+ ++  + +p G+ rle++g lv +++++   +++ le +q+l +++
     KKY19528.1 162 YINFIANFLLLVAKIAVIVLTSSLSVLASLVDAALDFLSTAIVWTTTKLIARQDQYAYPVGRRRLEPVGVLVFSIIMITSFFQVGLECFQRLTSGD 257
                    799******************************************************************************************999 PP

  Cation_efflux  98 ereihaglalvvalvslvvnlalllilrragrklrsaalkaaalhvlgDaltslgvlvsalvillfnlksgplaDpvaslligliilysalkllke 193
                    +  ++ g+ ++++ +s+vv   + + + r    +++++++a a+++++D++ ++  ++  lv ++ ++    ++D++++ll++l++++++ ++  e
     KKY19528.1 258 HSIVELGIPAIIIMASTVVIKGFCFVWCRL---IKNSSVQALAQDAMTDVVFNIFSIIFPLVGFYAKV---WWLDALGGLLLSLYVIVNWASTSSE 347
                    999999998888888877777777777766...59***************************999844...58*********************99 PP

  Cation_efflux 194 slseL 198
                     +++L
     KKY19528.1 348 HIRNL 352
                    99998 PP

>> ZT_dimer  Dimerisation domain of Zinc Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.3e-09   5.9e-06      19      77 ..     376     433 ..     359     434 .. 0.89

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.3e-09
                 -EEEEEEEEE-S----EEEEEEEE-TTS-HHHHHHHHHHHHHHHHHH-TT--EEEEEEE CS
    ZT_dimer  19 vkgvhdlrtrksGskifvdlhievdgdlsvkeaHeiadevekrikeefpgvadvliHve 77 
                 +k ++ l++ ++G+k+ v+++i++d+++s++++H++ + ++  + e++p v + ++H +
  KKY19528.1 376 IKCIQGLQAYHAGDKLNVEVDIVLDEHMSLRDSHDLGESLQYVL-ESVPTVDRAFVHTD 433
                 56677889999*****************************9999.5899*9999**975 PP

>> Alpha-mann_mid  Alpha mannosidase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   2.4e-05      0.11       3      52 ..      16      69 ..      14      75 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.4e-05
                    --GGGTSSCHHHHHHHHHHHHHHHHHHHCCTTT....-SCGC-HHHHHHHHHHH CS
  Alpha-mann_mid  3 hrgtfTSrarlKrlnrkleslLraaellssaaa....skgyeypkeeleelwka 52
                    +  ++TS+ +lK++++ + +++++ + l s++      ++++ p++ ++e +++
      KKY19528.1 16 WEQYYTSKEELKAYSKPVRQYYERNNFLVSQYLyidrLLDSSVPHNLIQEYHQQ 69
                    99****************************665667788999999999988876 PP

>> BCNT  Bucentaur or craniofacial development
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   4.4e-05       0.2      28      58 ..      16      43 ..      11      46 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.4e-05
        BCNT 28 WeaykdkegikeeLeahnkgkegYlerqdFL 58
                We+y ++   keeL+a++k  ++Y er +FL
  KKY19528.1 16 WEQYYTS---KEELKAYSKPVRQYYERNNFL 43
                9999999...99******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3261.98
//
Query:       KKY19529.1  [L=583]
Description: putative synaptic vesicle transporter svop [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-23   80.8  22.5    8.6e-23   80.8  22.5    2.6  2  MFS_1     Major Facilitator Superfamily
    2.2e-08   33.3   1.1    2.1e-07   30.1   0.0    2.5  3  PTR2      POT family
    0.00021   19.7   1.4    0.00021   19.7   1.4    2.1  2  BT1       BT1 family
  ------ inclusion threshold ------
      0.089   11.1   7.0       0.17   10.1   0.7    2.4  2  OATP      Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8  22.5   1.9e-26   8.6e-23      16     333 ..      39     482 ..      31     493 .. 0.80
   2 ?   -2.5   6.4      0.42   1.9e+03     132     171 ..     516     555 ..     504     576 .. 0.65

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 1.9e-26
       MFS_1  16 gpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw.lllvlrvlqGlgagalfpagaaliad 112
                 +p+ +  + e+lg+s   ++  +++   + +++++ l +++ +fGrr+v++l+ ++ ++ +++ + + +++  ++lv  + + lg +++  +++  +ad
  KKY19529.1  39 TPTWT-PMHEQLGFSYEILNDSYAVGCGTLSFGAMQLIPFALKFGRRPVYVLSTAGQFAVSVWSAkL-QTVAdIMLVNAFSCWLG-ALAEVLVQMTVAD 134
                 56666.677888877777666444444444555555566677******************6777767.88887777777777776.8************ PP

       MFS_1 113 wfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee....................... 188
                 +f   +rg +++++  ++++Ga l+p+++g+++ s gWr+v++ +ai++++a+vlfl+ + e++ +++  +++++                        
  KKY19529.1 135 VFFVHQRGVMNSMYVWFVNVGASLAPVAAGYITLSQGWRWVWWWNAIFFAVALVLFLFCYEETKYTPPAIEGIPRVmvqdplagaeqkahdvesktvme 233
                 *********************************999******************988888666666666666666677778888888888888888888 PP

       MFS_1 189 .....................................................................................kgtgpaplvpawka 202
                                                                                                           +++vp +  
  KKY19529.1 234 kaepktaeaavddgvsqnltkieidpttpkktylqkltlwtstpgswneffrhswqpvvilftrprcksatytmraakktiyatfDNLILFSIVP-YLD 331
                 88888899999999*********************************999998888888888888888888888888888777777777777777.888 PP

       MFS_1 203 llkdp.......vlw.illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr............lgrrrrlllal 281
                 l ++p       v++ +ll++ l+++ ++++++     ++   ++++   ++gl++  +++++ i+al++g +sd             + ++ rl++++
  KKY19529.1 332 LYHNPdsaqnpsVFFmSLLYGTLIATSCVQITTLS-SWMALPPYNFN-SAQIGLMSLPGWIGTTIGALITGPISDWlilflsrrnngiYEPEMRLWVII 428
                 88888777777644346777777776666663333.33357999***.79***9999999999999**************9999999988899999999 PP

       MFS_1 282 lllllaalglallavtssavllll....vlvliGfglgfvfpsllalasdlappee 333
                 +++ ++ +gl++++    + +++     +++++ fg   +++++l++++d++   e
  KKY19529.1 429 AFIPFVPAGLFMFGIGLAKGASWPilamGSAICAFGTTPASSISLTYITDSY--TE 482
                 9999999999999999555555551133666688888888999999999998..44 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.42
       MFS_1 132 lGailgpllggllasslgWravfyilaivsllafv.lflll 171
                 +++i+  ++ +++a s+g + v++ +++++  +++  f++ 
  KKY19529.1 516 ISMIFVFAATPWIA-SVGMQNVYITIGVLLTAVLLgNFVFI 555
                 55666666777777.77777777777777777766433333 PP

>> PTR2  POT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   4.8e-11   2.1e-07      77     177 ..     145     246 ..     130     282 .. 0.75
   2 ?    0.5   0.2     0.045     2e+02     324     378 ..     344     397 ..     313     404 .. 0.66
   3 ?    0.6   0.2     0.045     2e+02     337     379 ..     356     398 ..     337     430 .. 0.55

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 4.8e-11
                 HHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHCTTTS-EE------SHHHHCCCHSHH.HHHCCCHHHHHHHHHHHHHSHHHHH CS
        PTR2  77 FsiFyfsiNvGSLlsliitpylqenvgyplgFgipavlmiiallvFllGsrlykkkppkgnvltkvfkvllva.aknkvkkirssagkkklhwldkake 174
                  s++++ +NvG+ l++++ +y+   +g+ + +   a+++++al+ Fl++ +  k +pp  + + +v+ + ++a a +k + ++s+++ +k++ ++  + 
  KKY19529.1 145 NSMYVWFVNVGASLAPVAAGYITLSQGWRWVWWWNAIFFAVALVLFLFCYEETKYTPPAIEGIPRVMVQDPLAgAEQKAHDVESKTVMEKAEPKTAEAA 243
                 489*******************************************************55555555555555504555556677777777777777777 PP

                 H-- CS
        PTR2 175 ldk 177
                 +d+
  KKY19529.1 244 VDD 246
                 777 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.045
                 TCCCHHHHHHHHHHHHHCCCHHHHHHCTSS-TTTCCCCHHHHHHHHHHHHHHHHH CS
        PTR2 324 vlwlipqylligiselfasiggleffykeapksmkslitglflltnalgnflssv 378
                 v+++ + y +  i+  +++i+ l+  + + p +++s+ +gl+ l   +g  ++++
  KKY19529.1 344 VFFMSLLYGT-LIATSCVQITTLSSWMALPPYNFNSAQIGLMSLPGWIGTTIGAL 397
                 3333333333.34666777777777777777777777777777666666666655 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.045
                 HHHHCCCHHHHHHCTSS-TTTCCCCHHHHHHHHHHHHHHHHHH CS
        PTR2 337 selfasiggleffykeapksmkslitglflltnalgnflssvl 379
                 +  +++i+ l+  + + p +++s+ +gl+ l   +g  +++++
  KKY19529.1 356 ATSCVQITTLSSWMALPPYNFNSAQIGLMSLPGWIGTTIGALI 398
                 3344444444444444444444444444444444444444333 PP

>> BT1  BT1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   1.4   4.6e-08   0.00021      63     180 ..      88     198 ..      52     257 .. 0.85
   2 ?   -2.0   2.6      0.17   7.6e+02     301     391 ..     469     554 ..     453     561 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 4.6e-08
         BT1  63 vvscllgaafallygllpakeasakvaaafillsslgkaivdvlsdalvselarqspkagpsLvSwiwlvsavGgiiasvlsGpLldagktrisvlvsa 161
                 v+s     a   ++++++ak + ++  +++  +s +  a+++vl++  v+ +   +++    + S   +++ vG+ +a v  G+++ ++  r +    a
  KKY19529.1  88 VLS----TAGQFAVSVWSAKLQTVADIMLVNAFSCWLGALAEVLVQMTVADVFFVHQRGV--MNSMYVWFVNVGASLAPVAAGYITLSQGWRWVWWWNA 180
                 334....3444455678999999888888889999****************998887765..****999****************************** PP

         BT1 162 alqlltvvvflfnwygerk 180
                 ++ ++ +v+flf  y+e k
  KKY19529.1 181 IFFAVALVLFLFC-YEETK 198
                 *********9996.66655 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.17
         BT1 301 kanvFlyltkalylqlpgaldafylakaeClpdgPnfsyeflgtvkgvigsiagligvtlfnrllkklsyrlvfivttvlqvlaglfdlil 391
                 ++   +y+t     +++++l  f l+    l   P++ + +l +v     ++ ++i v++ + +++ + +++v i + vl ++  l + ++
  KKY19529.1 469 SSISLTYITDSY-TEVSSPLFLFALNP---LTPSPQIVADALVSVT-FTRNLISMIFVFAATPWIASVGMQNVYITIGVLLTAVLLGNFVF 554
                 555567777654.78888886666654...5567788899999998.8899999999999999*****99999999999888777666655 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.8    0.0026        12     190     232 ..     143     193 ..     122     298 .. 0.78
   2 ?   10.1   0.7   3.8e-05      0.17     132     172 ..     451     491 ..     436     552 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0026
                 xxxxxxxxxxx.xxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 190 lllklyvdids.eisltp.......kdprWvgaWWlgflilgvllllaaip 232
                 +++++yv + + + sl p        ++ W   WW + ++++v+l+l+ + 
  KKY19529.1 143 VMNSMYVWFVNvGASLAPvaagyitLSQGWRWVWWWNAIFFAVALVLFLFC 193
                 677777777556667777778888446779999****99999999998765 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 3.8e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 132 vllfflaqlllGiGatpiytlGisYidDnvkkknsplylgi 172
                 + ++ ++  ++++G+tp  ++ ++Yi D+ ++ +spl+l +
  KKY19529.1 451 WPILAMGSAICAFGTTPASSISLTYITDSYTEVSSPLFLFA 491
                 45899********************************9833 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.52
# Mc/sec: 3364.39
//
Query:       KKY19530.1  [L=283]
Description: hypothetical protein UCRPC4_g04513 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-55  187.2   0.1    2.2e-55  186.9   0.1    1.1  1  Protoglobin    Protoglobin
  ------ inclusion threshold ------
      0.081   12.7   0.1       0.12   12.1   0.1    1.2  1  Orthopox_A43R  Orthopoxvirus A43R protein


Domain annotation for each model (and alignments):
>> Protoglobin  Protoglobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.9   0.1   2.5e-59   2.2e-55       3     158 .]      21     198 ..      19     198 .. 0.98

  Alignments for each domain:
  == domain 1  score: 186.9 bits;  conditional E-value: 2.5e-59
                  HHHHHHHHHTT-SHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCTSHHHHHHHCH................HCHHHHHHHHHHHHHHHCCCSSCCHHHH CS
  Protoglobin   3 arlayllsflglteedlaaLralapliealipavvdafYekllsfpetarifet................ssqierlkdflksyllklfsgpfdsayv 84 
                   r++yl+sfl+++++d+ aL +++++i+a ipa+v+++Y+kll++++tar+f+t                s+qi+++k+fl++yl+kl s+p++++y+
   KKY19530.1  21 TRIQYLQSFLEFDSDDVNALVEGQKYIKAVIPAIVNIVYKKLLKYDITARVFTTrdtrnedeleqfvtedSAQIQHRKMFLRWYLTKLNSDPSKMEYW 118
                  79************************************************************************************************ PP

                  HHHHHHHHHHC......HCT--HHHHHHCHHHHHHHHHHHHCCCS.-SHHHHHHHHHHHHHHHHHHHHHHCGGGBXTTX. CS
  Protoglobin  85 eyldkvGkmht......rlgleprwyiaalglvqevlleallekeklsaaektalvkalnKliwldndlaleaYvregee 158
                  eyldkvG mh+      +l++++  + a+lg++q++++ea+l++++l++a+k+a+vkal K+iw++ndl+++++  +g+e
   KKY19530.1 119 EYLDKVGLMHVglgrrnPLHVDYVFLGACLGYIQDSMFEAILSHPHLPMANKIAIVKALGKIIWIQNDLFAKWHCTDGKE 198
                  *************************************************************************9998875 PP

>> Orthopox_A43R  Orthopoxvirus A43R protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   1.4e-05      0.12      17      74 ..      22      77 ..      12     104 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.4e-05
  Orthopox_A43R 17 vlvysssifrfrsedve.lcygnlyfdriynnvvnikyipehipykynfinrtlsvdel 74
                    + y  s + f s+dv+ l+ g+ y+  +   +vni y+      ky++  r ++  + 
     KKY19530.1 22 RIQYLQSFLEFDSDDVNaLVEGQKYIKAVIPAIVNIVYKK---LLKYDITARVFTTRDT 77
                   577999**********75899*****************98...6788888888876443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1988.57
//
Query:       KKY19531.1  [L=365]
Description: putative serine threonine-protein phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-36  127.3   0.1    1.7e-36  126.7   0.1    1.3  1  Metallophos  Calcineurin-like phosphoesterase
      1e-16   61.1   0.0    1.8e-16   60.3   0.0    1.4  1  STPPase_N    Serine-threonine protein phosphatase N-terminal 


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   0.1   1.9e-40   1.7e-36       2     201 ..      92     283 ..      91     286 .. 0.92

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 1.9e-40
                  EEEEEESBTBTTCCTHHHHHHHHHHHH..HHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddl..lreekpdlvllaGDlvdrgdlekellel.laalvkypipvylllGNHe........gfeeellnkygyl 88 
                  ++ ++gD+H     gq+ dl++l++ +  ++   ++l+l  GD+vdrg  + e++ l +++++k+p ++++l+GNHe        gf++e++++    
   KKY19531.1  92 PVKIVGDIH-----GQYTDLIRLFEMCgfPP-AANYLFL--GDYVDRGKQSLETILLlFCYKLKFPENFFILRGNHEcanvtrvyGFYDECKRRCN-- 179
                  5789*****.....***********997444.4789999..*******66666666669***********************************88.. PP

                  HHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHH CS
  Metallophos  89 gifsepwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsplyrgsgylfgde 182
                      ++w++++++fn+lp+as++ g  k++++hGg sp l  + d+++++ +++++p+ g   d++++d       + ++   +  ++rg +y fg +
   KKY19531.1 180 ---IKVWKTFVDTFNCLPIASIVAG--KIFCVHGGlSPSL-SHMDDIRQIARPTDVPDYGllnDLLWSD-------PADMEADWESNERGVSYCFGKK 264
                  ...899*******************..********65555.*****************99*********.......********************** PP

                  HHHHHHHHTTESEEEEESS CS
  Metallophos 183 aledllkkygvdlvisGHt 201
                  +++d+l +++ dlv+++H 
   KKY19531.1 265 VIMDFLARHDFDLVCRAHM 283
                  ******************7 PP

>> STPPase_N  Serine-threonine protein phosphatase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0     2e-20   1.8e-16       1      48 []      42      90 ..      42      90 .. 0.91

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 2e-20
   STPPase_N  1 vDdiIerLlevrgkpggkkvq.LseaEIrqlCakareiFLsQPtLLeLe 48
                +Dd+I+rLl+++++ + +k   L++aEI+++C+++re++LsQP LLeL+
  KKY19531.1 42 LDDMITRLLDAGYSAKVTKAVaLKNAEITAICHAVREVLLSQPALLELS 90
                7************777666555**************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 2322.92
//
Query:       KKY19532.1  [L=749]
Description: putative chromatin assembly factor 1 subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-18   64.9  10.3    0.00078   20.2   0.1    6.8  7  WD40         WD domain, G-beta repeat
    2.8e-12   46.8   0.0    0.00023   21.4   0.0    5.3  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0026   17.6   0.7     0.0056   16.5   0.7    1.6  1  HIRA_B       HIRA B motif
  ------ inclusion threshold ------
      0.014   15.3   0.1        3.3    7.6   0.0    3.4  4  eIF2A        Eukaryotic translation initiation factor eIF2A
       0.47   10.5   8.9         19    5.3   0.1    4.5  4  PD40         WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00019      0.67      15      38 .]      21      43 ..       8      43 .. 0.68
   2 !   19.2   0.0   4.5e-07    0.0016       4      37 ..      56      90 ..      54      91 .. 0.92
   3 !   20.2   0.1   2.2e-07   0.00078       8      38 .]     121     150 ..     111     150 .. 0.83
   4 !   12.4   0.0   6.5e-05      0.23       2      37 ..     171     207 ..     170     207 .. 0.84
   5 ?   -0.9   0.0         1   3.6e+03      14      27 ..     345     358 ..     333     366 .. 0.76
   6 ?   -0.4   0.0      0.69   2.5e+03       3      17 ..     396     411 ..     395     418 .. 0.74
   7 ?    1.3   0.1      0.21   7.4e+02      14      33 ..     532     551 ..     509     553 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
                EEEEETTSSEEEEEETTSEEEEEE CS
        WD40 15 slafspdgawlasGsdDgtvriWd 38
                +++ +++g++ ++G+ D+++r+W+
  KKY19532.1 21 HFDPHKSGRLATAGG-DNNIRLWS 43
                334666777777888.*******5 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 4.5e-07
                EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37
                l tl  H +sv+ ++f+p g +las++dDg+v +W
  KKY19532.1 56 LSTLIKHtQSVNVVRFCPKGEMLASAGDDGNVLLW 90
                6788889999************************* PP

  == domain 3  score: 20.2 bits;  conditional E-value: 2.2e-07
                 ESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGHssvtslafspdgawlasGsdDgtvriWd 38 
                 tG   +++la+spdg  +++G+ D+t ri++
  KKY19532.1 121 TGA-EIYDLAWSPDGLHFITGGVDNTARIYN 150
                 333.5************************98 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 6.5e-05
                 EEEEEEESSSS.EEEEEEETTSSEEEE.EETTSEEEEE CS
        WD40   2 qclrtltGHss.vtslafspdgawlas.GsdDgtvriW 37 
                 q++r +  Hs+ v ++a++p + ++a+ +s D++v+i+
  KKY19532.1 171 QLIRQIAEHSHyVQGVAWDPLNEFIATqSS-DRSVHIY 207
                 677778889778*************98446.*****97 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 1
                 EEEEEETTSSEEEE CS
        WD40  14 tslafspdgawlas 27 
                 + l f pdg++l++
  KKY19532.1 345 RRLTFAPDGSLLFT 358
                 56789999999986 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 0.69
                 EEEEEESS.SS.EEEEE CS
        WD40   3 clrtltGH.ss.vtsla 17 
                 ++ +l GH ++ v +++
  KKY19532.1 396 PVAHLPGHkKPsV-AVK 411
                 6789****87775.553 PP

  == domain 7  score: 1.3 bits;  conditional E-value: 0.21
                 EEEEEETTSSEEE.EEETTSE CS
        WD40  14 tslafspdgawla.sGsdDgt 33 
                 ++l +s dg  l+ ++s Dg 
  KKY19532.1 532 SDLTWSNDGLTLLmTSS-DGF 551
                 46779999999755999.985 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.016        58      37      77 ..      13      54 ..       6      61 .. 0.71
   2 !    6.6   0.0    0.0026       9.5      36      64 ..      61      89 ..      40      95 .. 0.85
   3 !   21.4   0.0   6.5e-08   0.00023       2      75 ..      70     159 ..      69     167 .. 0.88
   4 !    7.8   0.0    0.0011         4      26      67 ..     170     209 ..     158     224 .. 0.84
   5 ?    4.1   0.0     0.015        55      40      70 ..     530     560 ..     500     568 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.016
  ANAPC4_WD40 37 edsevrsLaWkpdg.klLavaysdgevrlldaesgkvvhsls 77
                 e++ + s ++ p     La a  d+++rl ++e++   ++++
   KKY19532.1 13 EQQPIYSAHFDPHKsGRLATAGGDNNIRLWSVENEGEQRKVT 54
                 556666666665431469999***********9987666655 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0026
  ANAPC4_WD40 36 kedsevrsLaWkpdgklLavaysdgevrl 64
                 k+ ++v+ +++ p+g++La a +dg+v l
   KKY19532.1 61 KHTQSVNVVRFCPKGEMLASAGDDGNVLL 89
                 678899999****************9976 PP

  == domain 3  score: 21.4 bits;  conditional E-value: 6.5e-08
  ANAPC4_WD40   2 swcptmDLiAlatedgellvfRlng.............qrvwtl...eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                  ++cp+ +++A a +dg++l+   +              ++ w +    +++++ e+ +LaW+pdg  +  +  d++ r+++a++g+ +++
   KKY19532.1  70 RFCPKGEMLASAGDDGNVLLWVPSEvpssvigednsddKETWRVkhmCRSTTGAEIYDLAWSPDGLHFITGGVDNTARIYNASTGEQISE 159
                  699999999999999999998777778889999999997777777768899**********************************98875 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0011
  ANAPC4_WD40  26 gqrvwtleedkedsevrsLaWkpdgklLavaysdgevrllda 67 
                  gq + ++  +++++ v+++aW p ++++a   sd +v+++  
   KKY19532.1 170 GQLIRQI--AEHSHYVQGVAWDPLNEFIATQSSDRSVHIYAL 209
                  5666666..788999***********************9965 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.015
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesg 70 
                  + ++L W++dg  L +  sdg ++ l    g
   KKY19532.1 530 TFSDLTWSNDGLTLLMTSSDGFCSTLAFAPG 560
                  5678*****************9987766555 PP

>> HIRA_B  HIRA B motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.7   1.6e-06    0.0056      10      22 ..     722     734 ..     721     735 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.6e-06
      HIRA_B  10 GKKRVaPtLiSss 22 
                 +K+RVaPtLiS +
  KKY19532.1 722 KKRRVAPTLISGG 734
                 7**********76 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.023        82      92     119 ..      53      82 ..       8      87 .. 0.67
   2 ?    7.6   0.0   0.00091       3.3      59     101 ..     122     163 ..     108     173 .. 0.76
   3 ?   -1.8   0.0      0.65   2.3e+03     146     164 ..     183     201 ..     163     208 .. 0.73
   4 ?   -1.0   0.0      0.39   1.4e+03     128     159 ..     510     544 ..     502     550 .. 0.55

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.023
                 CEEEEEE..EEES--EEEE-TTSSEEEEE- CS
       eIF2A  92 vkviskl..eeqkrNtiffspkgklvllaG 119
                 v  +s+l  ++q+ N + f+pkg++++ aG
  KKY19532.1  53 VTYLSTLikHTQSVNVVRFCPKGEMLASAG 82 
                 44444441145789*************998 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00091
                 SS.EEEEEE-TTSS-EEEEESSSSCEEEEEECS.CEEEEEEEEE CS
       eIF2A  59 egpihdvaWspkskefaviyGkmpakvslfdlk.vkviskleeq 101
                   +i+d+aWsp++ +f  i G +++++ +++   +++is+  ++
  KKY19532.1 122 GAEIYDLAWSPDGLHF--ITGGVDNTARIYNAStGEQISERIRN 163
                 3459*******99988..7999********99546766665554 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.65
                 --EEEE-TTSSEEEEEE-T CS
       eIF2A 146 atlvewspdgryvlTatta 164
                    v w+p  ++++T ++ 
  KKY19532.1 183 VQGVAWDPLNEFIATQSSD 201
                 3468999999999998875 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.39
                 EEEETT...TTEEEEEEE-TT--EEEE-TTSSEEE CS
       eIF2A 128 eiwdvk...kkkkiakaeaanatlvewspdgryvl 159
                  ++d++    +  +++++ a+ +++ ws+dg  +l
  KKY19532.1 510 YVYDTQqqsPLCVVSNLHYATFSDLTWSNDGLTLL 544
                 45565532223345566666667777777774332 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0058        21       7      20 ..     121     134 ..     119     138 .. 0.78
   2 ?    2.1   0.1     0.054   1.9e+02      15      27 ..     348     359 ..     337     366 .. 0.81
   3 ?    5.3   0.1    0.0054        19      15      28 ..     535     548 ..     532     552 .. 0.90
   4 ?   -1.0   0.4      0.52   1.9e+03       2      16 ..     588     602 ..     587     604 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0058
                 SSS.EEEEEE-TTS CS
        PD40   7 tpgnegaPsfSPDG 20 
                 t +++++ ++SPDG
  KKY19532.1 121 TGAEIYDLAWSPDG 134
                 45588999****** PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.054
                 EE-TTSSEEEEEE CS
        PD40  15 sfSPDGkrlaFsS 27 
                 +f PDG +l F+ 
  KKY19532.1 348 TFAPDG-SLLFTP 359
                 89****.888875 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0054
                 EE-TTSSEEEEEEE CS
        PD40  15 sfSPDGkrlaFsSd 28 
                 ++S+DG +l  +S+
  KKY19532.1 535 TWSNDGLTLLMTSS 548
                 8*********9996 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.52
                 EE--SSSS.EEEEEE CS
        PD40   2 krltntpgnegaPsf 16 
                 + +t+tpg+  +Ps+
  KKY19532.1 588 PAPTPTPGPGASPSL 602
                 6799****9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.51
# Mc/sec: 4434.50
//
Query:       KKY19704.1  [L=256]
Description: putative calcium calmodulin dependent protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-27   95.3   0.0    5.6e-27   94.7   0.0    1.2  1  Pkinase         Protein kinase domain
    1.9e-10   40.5   0.0    2.7e-10   40.0   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
      0.002   17.0   0.1     0.0022   16.8   0.1    1.1  1  Pkinase_fungal  Fungal protein kinase
     0.0097   15.3   0.1      0.071   12.5   0.1    2.0  2  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.049   13.5   0.0      0.078   12.9   0.0    1.3  1  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0   1.6e-30   5.6e-27      92     264 .]      38     252 ..      14     252 .. 0.84

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 1.6e-30
                 HSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE........EEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHH CS
     Pkinase  92 kgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekge........lKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvW 181
                 ++ ++   +k+i+k  l+g++ lH+kgi+H D+K +Ni++d +++        ++i+D   a+ +  +s  +  +vg   +++PE   + ++ k++D++
  KKY19704.1  38 QKDVPFPLIKRILKDSLQGIAALHEKGIVHTDIKADNIMVDWDEMdsnttvrqVQIADIEDAAYVPDHSAiVGRQVGNWMWRSPEAHASGQVHKPSDIF 136
                 3445666899*******************************555557888999**************9999999************************* PP

                 HHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS......................................-HHHHHHHH CS
     Pkinase 182 slGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei......................................seeakdllk 242
                 s Gv+++  lt++ +f+   ++e+ ++  d+   ++ +l+ +   +   +++                                      ++e+kdl+ 
  KKY19704.1 137 SFGVVCIYALTKQVIFA--VTDEELKEGEDK---LAIVLERQLSYFSDLESLsgllqhlgdspwaqiftviaegfnkelprapfalwrdlDPEFKDLVG 230
                 *****************..333333444444...445555433334444444666888899999999******************************** PP

                 HHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 243 kllkkdpkkRltaeellqhpyl 264
                 k+ + dp++R+ta+e+l+h+++
  KKY19704.1 231 KMTNIDPTRRITAHEALSHRWF 252
                 *********************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   7.7e-14   2.7e-10      98     196 ..      39     143 ..      22     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 7.7e-14
                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE........TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse........nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksD 187
                  + + +  + ++  +  +G++ L++k +vH d+ a N++++          ++v+i+D   a  +   d+    +++  +  W +pE+  ++++ + sD
   KKY19704.1  39 KDVPFPLIKRILKDSLQGIAALHEKGIVHTDIKADNIMVDWdemdsnttVRQVQIADIEDAAYV--PDHSAIVGRQVGNWMWRSPEAHASGQVHKPSD 134
                  55555666677788889**********************977788877677999***9888888..444445566788999***************** PP

                  HHHHHHHHH CS
  Pkinase_Tyr 188 vWsfGvllw 196
                  ++sfGv+++
   KKY19704.1 135 IFSFGVVCI 143
                  ******985 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   6.2e-07    0.0022     312     364 ..      50     104 ..      44     183 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6.2e-07
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilit.ds.kke.gerkglLiDLDlakelsd 364
                     l+D ++g   L+ ++gi+H Di ++Ni++  d+ +++   r+  ++D++ a  + d
      KKY19704.1  50 LKDSLQGIAALH-EKGIVHTDIKADNIMVDwDEmDSNtTVRQVQIADIEDAAYVPD 104
                     8999********.***************9853223333556666778777776665 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1     2e-05     0.071     123     156 ..      49      83 ..      31     100 .. 0.78
   2 ?    0.5   0.0      0.09   3.2e+02      76     110 ..     151     185 ..     144     206 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2e-05
         Kdo 123 llkavgrliaklhragvnHadlyaknillqqee.e 156
                 +lk+  + ia lh+ g+ H+d+ a ni+++ +e +
  KKY19704.1  49 ILKDSLQGIAALHEKGIVHTDIKADNIMVDWDEmD 83 
                 5555557799*******************998852 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.09
         Kdo  76 pkpvaagavkvgleyrAlllterlegaqdLedlla 110
                 + +v  ++ k+g    A++l ++l  ++dLe l+ 
  KKY19704.1 151 IFAVTDEELKEGEDKLAIVLERQLSYFSDLESLSG 185
                 45666677777888999*************98765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.2e-05     0.078     156     182 ..      50      80 ..      15     101 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.2e-05
                 HHHH--S...SS-EEEE-SS-SGGGEEEC.. CS
         APH 156 laallpg...elptvllHgDlhpgNllvd.p 182
                 l++ l+g     +++++H D++ +N++vd +
  KKY19704.1  50 LKDSLQGiaaLHEKGIVHTDIKADNIMVDwD 80 
                 4444444665779****************62 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.33s 00:00:00.88 Elapsed: 00:00:00.51
# Mc/sec: 1497.25
//
Query:       KKY19705.1  [L=580]
Description: putative beta-glucanase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-28   99.9   3.9    2.6e-28   99.0   3.9    1.4  1  Glyco_hydro_30   Glycosyl hydrolase family 30 TIM-barrel doma
     0.0002   21.5   0.0    0.00058   20.0   0.0    1.8  1  Glyco_hydro_30C  Glycosyl hydrolase family 30 beta sandwich d
    0.00069   19.3   0.0      0.001   18.8   0.0    1.4  1  Glyco_hydr_30_2  O-Glycosyl hydrolase family 30
  ------ inclusion threshold ------
      0.013   14.7   0.1       0.02   14.1   0.1    1.3  1  Glyco_hydro_59   Glycosyl hydrolase family 59


Domain annotation for each model (and alignments):
>> Glyco_hydro_30  Glycosyl hydrolase family 30 TIM-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   3.9   5.8e-32   2.6e-28       3     348 .]     105     441 ..     103     441 .. 0.83

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 5.8e-32
                     EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST-STT..-TT-TT----HHHHTTHHHHHHHHHHH-SS-E CS
  Glyco_hydro_30   3 GfGstlsdasganlkslsdkladlllkqyfsdeGlnlqigrvpiastdfssrvytyddtad..dyslanfsltkedtklkipyikraqkynqdlk 95 
                     GfG + +d++ + + +l   + + ++ + f ++G n+ ++r  i s+d+s   y+yd +a   d +l  f+l     ++   +i +   y+ d+ 
      KKY19705.1 105 GFGHSWTDSAVIMFNTLESYVFKEVMEDLFGQNGNNMGFMRHTIGSSDLSEYQYSYDANAGkvDSDLSAFTLGSYGEQMA-EMIAQMGDYKGDVF 198
                     9*******************************************************9997534889******99988875.67778889****** PP

                     EEEEES---GGGBTTSSSSSS-BBSS.....-TTSHHHHHHHHHHHHHHHHHHHTT--ESEEESSSSGGGGGSTT-SSS--B--HHHHHHHHHHT CS
  Glyco_hydro_30  96 llaapwaapgwlkttkavkGkGalkG.....kagdiyhkayakyfvkfleeyaksklsfwglsteneptaGsdkktklqslgftaetqrdfikrd 185
                     ll +pw+ pgw k ++    +G           + +y k  ++yf k++++++++++   +++  nep    +++++  ++ + ++ + d+ik+ 
      KKY19705.1 199 LLGSPWSYPGWAKNNHLFVAPGGASDsysnnSFNTKYTKEMVEYFSKYIDAFQEKGVVVNAITPMNEPLN-WQSGYP--TMHLPSDDEADLIKKG 290
                     ***************9887776543301000334578999999*************************65.556665..678899999******* PP

                     HHHHHHTSTT.TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEETTTS-HH.HHHHHHHHHSTTSEEEEEEEESS-STTS-SS-TT-HH CS
  Glyco_hydro_30 186 lGpalaassagknvkllilddnrgnlpkwadvvlndkdaakyvsGiavhayqdaead.khldethkkfpnvlllgteaseGskskdqsvdyGsfd 279
                     lG a++     +nv ++ +ddn  +       vln++   ++v+G+a h yq   ad + +d+ h  fpn l + +e s+     + +v   +f 
      KKY19705.1 291 LGTAMS----KRNVSIFAFDDNTYETTYPL-DVLNQE--HRHVDGVAWHCYQSPAADySVMDDIHDAFPNALQFMSECSDYASVVN-KV---NFL 374
                     **9874....3799********98876555.577765..589***********7777256899**************887555444.44...555 PP

                     HHHHHHHHHHHHHHTTEEEEEEEESEB-TTS---TT---B--SE..EEEGGGTEEEE-HHHHHHHHHHTTS CS
  Glyco_hydro_30 280 raadyasdildnlnnwvvGwternlvldaeGGpswvsdfvdapv..iafialaqfykqpmfyalahfskfi 348
                      a     + +  + +     + + ++ ++e Gp   ++ +d  +  i+  +  ++ k   +y ++hfs+++
      KKY19705.1 375 VAR----NFILPVHHGASAGSMWVMATNPEFGPHVSEGGCDECLgsIIVNSSTTYTKTNDYYMVGHFSRYV 441
                     554....445556666667788999********9999999987543666677899999**********986 PP

>> Glyco_hydro_30C  Glycosyl hydrolase family 30 beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.3e-07   0.00058      13      64 ..     460     512 ..     453     513 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.3e-07
  Glyco_hydro_30C  13 vssnvetvAFlnpDGsivvvilNrsessvtitvs.dsskskgslsvparSivT 64 
                      +++++   A +npD+s +v+++N+ + ++++ +  +++++k + +vp +++vT
       KKY19705.1 460 SDDQFFLMAVKNPDKSWAVIFMNNMGVDKDVVLGfTGTSQKWRGTVPNETVVT 512
                      45689999****************99999999985444467888999999998 PP

>> Glyco_hydr_30_2  O-Glycosyl hydrolase family 30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.3e-07     0.001     144     217 ..     227     299 ..     165     375 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.3e-07
                      SS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-T.-GGG--.SS-B----HHHHHHHHHHHHHHHHHHT CS
  Glyco_hydr_30_2 144 kelnlkadkiddfadflvkvadkfrkegvkfdylsPvneP.qWdwgegsqeGtpatnediaalvrkLseklsekk 217
                      ++  ++++ +++  ++++k +d f+++gv ++ ++P+neP  W+ g  +       +++   + + L +++s+++
       KKY19705.1 227 SNNSFNTKYTKEMVEYFSKYIDAFQEKGVVVNAITPMNEPlNWQSGYPTMH--LPSDDEADLIKKGLGTAMSKRN 299
                      33446667778999**************************88887663222..2222222233344555555555 PP

>> Glyco_hydro_59  Glycosyl hydrolase family 59
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   4.5e-06      0.02      87     173 ..     194     308 ..     168     395 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.5e-06
  Glyco_hydro_59  87 npdikldileWgaPgwlk..................ksaekasektaeylkswlkgakktygldidyiag...............lrnekeydkd 148
                       d+ l + +W++Pgw k                  + ++k++++++ey++++++++ ++ g+ ++ i++               l ++ e  + 
      KKY19705.1 194 KGDVFLLGSPWSYPGWAKnnhlfvapggasdsysnnSFNTKYTKEMVEYFSKYIDAF-QEKGVVVNAITPmneplnwqsgyptmhLPSDDE--A- 284
                     567888899**********************998765667889999**********9.6679******99666666555555543222222..2. PP

  Glyco_hydro_59 149 yvktlrkaLdkn.gykkvklvaadea 173
                       + ++k+L ++   ++v + a d++
      KKY19705.1 285 --DLIKKGLGTAmSKRNVSIFAFDDN 308
                     ..233344432213345667776643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3820.77
//
Query:       KKY19706.1  [L=2326]
Description: putative alpha-glucan synthase ags2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-17   64.6   1.8    3.2e-17   63.1   0.4    2.4  2  Alpha-amylase    Alpha amylase, catalytic domain
    3.5e-14   53.1   0.1    6.2e-14   52.3   0.1    1.3  1  Glyco_transf_5   Starch synthase catalytic domain
    3.5e-06   26.7   0.0    6.3e-06   25.8   0.0    1.3  1  Glycos_transf_1  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.059   13.4   0.0       0.16   12.0   0.0    1.7  1  Glyco_transf_4   Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.4   7.1e-21   3.2e-17       1     217 [.       5     253 ..       5     261 .. 0.74
   2 ?   -2.5   0.0      0.66     3e+03     129     165 ..    1796    1835 ..    1779    1836 .. 0.81

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 7.1e-21
                    --CHHHHCTCCCCCCCT-SCEEE-..B-CE-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCC........... CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwls..PifkspqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehew........... 83 
                    GDL+G+ + LdYl+++G+ +i+l+  P  ++p    gY i d   +d ++Gt + + + i+++he+g++v++D  +  +++               
     KKY19706.1   5 GDLQGLLDTLDYLHGMGIRGIYLAgpPLINQPWGADGYSILDHSLLDFHYGTLKLWRKAITEIHERGMYVVMDNTMGTMGNLLGFkgyfntstpft 100
                    9**********************877999********************************************88877777666466777777777 PP

                    ................CHCCHHSTTSGGGCC.C-E................ESS-STTC-....TTTTCSCEE.CTTTTCEEESSS-TTS-BB-TT CS
  Alpha-amylase  84 ................fkeslkkkgepkrdy.yiwkegk..........eekeppnnwks....lfdgsawey.dekaqeyylhlflkklpdLnte 147
                                    f+ s+++++    dy ++wke                   + +s    + d +a+    ++     l  f++ ++ L   
     KKY19706.1 101 vnehhvqwvssrryldFDFSNDYNE--TCDYpAFWKESGypvsdsvndrL----TGCYNSefdqYGDVEAFGVfPNWER--QLSRFASVQDRLREW 188
                    7666666666666654222222222..22221344443356666543221....2222222222444444444433333..499************ PP

                    TCCCCCCCCC.CCCCCCTTT-SEEEETTCCCTTTCCCCHCCHCCHHHHHHHHHHHTC..CGTT-EEEEE-TT- CS
  Alpha-amylase 148 neevrkelkd.vvkfwlekgidGfRlDvvkhvskvealesngeflheftqalnetva..srkevmtvgEvssd 217
                    ++ vr++l+   + +    ++dGfR D + +           + l e+++++ + ++  ++k++++ gE+  +
     KKY19706.1 189 HPPVREKLQTfGCIYIASLDVDGFRYDKATQATV--------DALSEYNHKVRQCARrfGKKNFFLPGEITLG 253
                    **********6666777777*******9999888........8899999999988878888999999998765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.66
                     TTCEEESSS-TTS-BB-TTTCC....CCCCCCCCCCCCCTT CS
  Alpha-amylase  129 aqeyylhlflkklpdLntenee....vrkelkdvvkfwlek 165 
                     ++e ++++f+ kl+dL   n+e    ++++l+++ k w+e+
     KKY19706.1 1796 TGE-FTNKFSTKLADLSGANSEdqlcIEQYLEQAEKKWFER 1835
                     445.8999*********999998887888888899999876 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.1   1.4e-17   6.2e-14       3     214 ..    1072    1276 ..    1070    1279 .. 0.77

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 1.4e-17
  Glyco_transf_5    3 lfvasEv..apl...aktGGLadvvgaLpkaLaklghdvrvilPrygaikeekkeleevaelskaaedeveve.v...ekvkvaklkkdgvdv 86  
                      l+++ E+    +   +k GGL+ +++ ++k L ++  d   ++P  g ++   +         + ae +++v+ +   +++ v  +  +++++
      KKY19706.1 1072 LIATIEYeiEDWdvkIKIGGLGVMAQLMAKHLGHE--DLIWVVPCVGGVNYPFD---------QPAE-PITVTiLgnaYEIAVQYHVVRNITY 1152
                      5555555435556679****************775..8999*****99998652.........2222.333443133466666666668**** PP

  Glyco_transf_5   87 yfldnpeffdreg..lYgdkgedyednaerfalfsraalelleklgwkpdvihahDWhtalvpallkelykerglfkkiktvftiHNlayqgr 177 
                      ++ld+p f ++++  +Y ++  d  d a  ++++++ +++++++  + +d+ h++D+h +l+p++l            ++ ++++HN ++qg 
      KKY19706.1 1153 VLLDAPVFRQQTKtdPY-PARMDDLDSAIYYSAWNQSIAAVIKR--FPVDIYHINDYHGSLAPIYLLPGT--------VPACLSLHNAEFQGL 1234
                      *******99766568**.4588889*******************..57******************9977........*************** PP

  Glyco_transf_5  178 fp.......kdelaalglpaedfekldglefygkvnflkagivy 214 
                      +p       +++ + ++l +   + ++ ++f + +n+l+ag+ y
      KKY19706.1 1235 WPirtdkelEEVCSVFNLLPT--NIKKYVQFGQVFNMLHAGVSY 1276
                      **9984442222233555433..346778888899999999977 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.4e-09   6.3e-06      12     127 ..    1362    1479 ..    1353    1525 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.4e-09
                       TTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.....STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEE CS
  Glycos_transf_1   12 nekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaG....ngeeekelkklaeelelsdnviflgevsredleellknadifvlp 99  
                       +   +++++vgr + +Kgvdl+ ++f+++ ++ ++nv+l+ +G       +++ lk +        +v+   e      + +++ a  +++p
       KKY19706.1 1362 DPSAELFVFVGRWSMQKGVDLIADVFPSVLEA-HSNVQLLCVGpvidLYGKFAALKLQRMMELYPGRVFAKPEFT-ALPPFIFSGAEFALIP 1451
                       566789*************************9.**********99994444555666655666666899988887.566666777******* PP

                       ESSBSS-HHHHHHHHTT--EEEETTTTH CS
  Glycos_transf_1  100 sisEgfGivllEAmaaglpviasnaggp 127 
                       s+ E+fG+v++E    g   +   +gg+
       KKY19706.1 1452 SRDEPFGLVAVEFGRKGALGVGARVGGL 1479
                       ************7666666666666655 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.5e-05      0.16      60     114 ..    1185    1237 ..    1127    1246 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.5e-05
  Glyco_transf_4   60 flrrlrrllkrekpDvvHahspaalgaallalrrrlgiplVltvHglyekrllka 114 
                        +++++++kr+ +D+ H+++++  +a    l     +p  l++H+ + ++l++ 
      KKY19706.1 1185 WNQSIAAVIKRFPVDIYHINDYHGSLAPIYLLP--GTVPACLSLHNAEFQGLWPI 1237
                      3346899****************9988877777..8**********997655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.12u 0.32s 00:00:01.44 Elapsed: 00:00:00.51
# Mc/sec: 13770.56
//
Query:       KKY19707.1  [L=420]
Description: putative cfem domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.3    9.2   6.5        2.5    8.3   5.6    2.0  1  Pox_A14   Poxvirus virion envelope protein A14


Domain annotation for each model (and alignments):
>> Pox_A14  Poxvirus virion envelope protein A14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.6   0.00014       2.5       9      74 ..     108     168 ..     101     183 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00014
     Pox_A14   9 nyystvliaGiiLLilacifafv.dfskststtdkawralsivsFilgivillglllfsmygrkCka 74 
                 ny +++l+  i+ L+   ++ f+  +  s+   +ka r  +i  F+++iv+++ +l+ +++  +C +
  KKY19707.1 108 NYANQILYNPILSLVKLSVILFLlRLN-SQ---QKAIRIFAISIFVVTIVSMVVILIVDVF--QCSP 168
                 788999999998777655555540333.22...46899**********************9..7755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1167  (0.0650901); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2661.80
//
Query:       KKY19708.1  [L=438]
Description: putative integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-10   40.6  26.3    2.5e-05   24.5   3.1    2.9  3  EamA            EamA-like transporter family
    1.2e-09   37.8   0.4    2.3e-09   36.9   0.4    1.5  1  Nuc_sug_transp  Nucleotide-sugar transporter
    9.4e-07   28.3   7.4    1.8e-06   27.4   7.4    1.4  1  UAA             UAA transporter family
    3.8e-06   26.5   5.4    0.00019   20.9   0.1    2.5  2  TPT             Triose-phosphate Transporter family
     0.0051   15.8   2.0     0.0051   15.8   2.0    3.0  3  CRT-like        CRT-like, chloroquine-resistance transporter-
  ------ inclusion threshold ------
       0.54    9.7  14.6       0.47    9.9   5.8    2.7  2  SLC35F          Solute carrier family 35
        5.8    7.2  10.1         10    6.4   0.3    3.0  3  DMT_6           Putative member of DMT superfamily (DUF486)


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.6   4.1e+03      63      83 ..       5      25 ..       3      28 .. 0.75
   2 !   24.5   3.1   9.8e-09   2.5e-05      62     135 ..     133     207 ..     119     209 .. 0.84
   3 !   24.1  11.8   1.2e-08   3.2e-05       2     135 ..     253     406 ..     252     407 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.6
        EamA 63 dwllllllgllgtvlafllff 83
                +++++l++g l t +++ l++
  KKY19708.1  5 ALISILVTGMLVTGVCNTLLT 25
                677888888888888887765 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 9.8e-09
        EamA  62 kdwlll.lllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 k+w l+ l + + + + +  l++ +l  + as+  +      +f+ ++sv++l+ k+ l+q+ +++++++Gv+l+
  KKY19708.1 133 KGWRLIlLAIPASCDITGTTLMNVGLLFVAASIYQMTRGALILFVGLFSVIFLRRKIHLYQWTALFIVVIGVALV 207
                 555554344444666778899****************************************************98 PP

  == domain 3  score: 24.1 bits;  conditional E-value: 1.2e-08
        EamA   2 lgillallaalfwaiyfvlskillrkv..spltltfvrfliagilllii.................allkegkl..aklslkdwllllllgllgtvlaf 79 
                 +g+ll+  a +f a+ f +  ++l+++  +pl ++++  ++++ + +i                  ++  e+    ++l+ ++++   +l  +++  ++
  KKY19708.1 253 IGVLLIAFAQIFTATQFCVEEWILEQYalEPLKVVGWEGIFGFTITIIAqvilhfavgrtskgrngYFDAEE-GykEVLTDRAIAVSSVLIMISIGGFN 350
                 79************************9999************999999888888877777777764333333.25799999999999************ PP

        EamA  80 llffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 ++ ++  +++sa+  s+i +   +f+ i+s +l  e+++++q++g+++ + G++l 
  KKY19708.1 351 FFGLSVTRSISATSRSIIDTCRTLFIWIISLALGWESFKWLQVIGFAMLVYGTFLF 406
                 *****************************************************996 PP

>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.4   8.9e-13   2.3e-09      86     156 ..     140     210 ..     132     267 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 8.9e-13
  Nuc_sug_transp  86 lavPsliYtvqnnllyvalsnLdaatyqvtyqlkilttalfsvllLkrklskkqWlslllLvaGvalvqlk 156
                     la+P+   +    l+ v+l  + a++yq+t    il   lfsv++L+rk++ +qW++l+++v+Gvalv l+
      KKY19708.1 140 LAIPASCDITGTTLMNVGLLFVAASIYQMTRGALILFVGLFSVIFLRRKIHLYQWTALFIVVIGVALVGLA 210
                     89999999999********************************************************9775 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   7.4     7e-10   1.8e-06      73     300 ..     148     408 ..     139     410 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 7e-10
         UAA  73 fitsvlnnealkydisvPvhiifrssklipvmilGililgkrYsllqylsvllltlGviiftllsakdk.........................kedsk 146
                 ++ ++l n  l + ++  +  + r + ++ v + ++++l+++ +l q ++++++++Gv ++ l+ a  k                         ++ ++
  KKY19708.1 148 ITGTTLMNVGLLF-VAASIYQMTRGALILFVGLFSVIFLRRKIHLYQWTALFIVVIGVALVGLAGAIFKgdtnvppsdglgpsdelakmvrdatSAATE 245
                 6677888899999.99999999999999*********************************996665447889******************99988889 PP

         UAA 147 eslnkfllGiallvlallldavlglvqeklykkygkhskealfyshllslplflllqgellsavkflsesedval........lslpsklfylllnvlt 237
                  +  ++++G++l+++a++++a    v+e++ ++y  +   ++    ++++ ++++ q  l  av   s+ ++ ++        +   + + +  ++ ++
  KKY19708.1 246 PAVVNTVIGVLLIAFAQIFTATQFCVEEWILEQYALEPLKVVGWEGIFGFTITIIAQVILHFAVGRTSKGRNGYFdaeegykeVLTDRAIAVSSVLIMI 344
                 999******************************************************************999999999997664444444445555555 PP

         UAA 238 qyvcikgV.lilisefgaltvtlvltlRKfvslllSillFknpltlqhlvgtllVflglllysy 300
                 +  + ++  l  +++++a   +++ t R +   ++S+ l  + + + +++g ++ + g++l++ 
  KKY19708.1 345 SIGGFNFFgLSVTRSISATSRSIIDTCRTLFIWIISLALGWESFKWLQVIGFAMLVYGTFLFND 408
                 5556665524567778888899**************************************9875 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   7.4e-08   0.00019      65     140 ..     137     212 ..     124     216 .. 0.89
   2 !    7.2   1.0    0.0011       2.8     228     290 .]     350     407 ..     296     407 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 7.4e-08
         TPT  65 lkailplalvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGvalasvtEl 140
                 l+ + + a + + g  l +v l  va S  ++ + +  +F  ++s ++l+ k++l  + +L ++v Gval  +  +
  KKY19708.1 137 LILLAIPASCDITGTTLMNVGLLFVAASIYQMTRGALILFVGLFSVIFLRRKIHLYQWTALFIVVIGVALVGLAGA 212
                 5566678999***********************************************************9877655 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0011
         TPT 228 lfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGvflYs 290
                  f+       +v   +s+ + s+ +t++  ++ ++s+ +  ++ ++l++iG a+ + G+fl++
  KKY19708.1 350 NFF-----GLSVTRSISATSRSIIDTCRTLFIWIISLALGWESFKWLQVIGFAMLVYGTFLFN 407
                 443.....456678899999*******99999999999999********************97 PP

>> CRT-like  CRT-like, chloroquine-resistance transporter-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.15   3.9e+02       2      22 ..       8      28 ..       7      36 .. 0.84
   2 !   15.8   2.0     2e-06    0.0051      78     144 ..     147     213 ..     133     221 .. 0.85
   3 ?    0.6   2.3     0.083   2.1e+02     191     333 ..     258     405 ..     248     406 .. 0.55

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.15
    CRT-like  2 liyvvllvlsgviNsillKkv 22
                 i+v+ ++++gv+N++l K +
  KKY19708.1  8 SILVTGMLVTGVCNTLLTKYQ 28
                588999***********9965 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2e-06
    CRT-like  78 DavsgilvvigavstsGslqvllnqaiipitllasllllkerysliqylGAlviilgvvvvlipsll 144
                 D  ++ l+ +g   ++ s+ ++   a i +  l+s+++l+++ +l+q +  +++++gv++v  +  +
  KKY19708.1 147 DITGTTLMNVGLLFVAASIYQMTRGALILFVGLFSVIFLRRKIHLYQWTALFIVVIGVALVGLAGAI 213
                 666667788899999999****************************************987666555 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.083
    CRT-like 191 valfqlligilllpvnalllkpakikfkeileslkdGlaCllgkntiveev................lscgldeqkscDdCekawivvllyllvNi.iy 272
                 +a++q+++++  + v++++l++ ++++ +++   ++G+  +  + ti+ +v                ++   + ++     ++a  v  + +++ i   
  KKY19708.1 258 IAFAQIFTATQ-FCVEEWILEQYALEPLKVVG--WEGIFGF--TITIIAQVilhfavgrtskgrngyFDAEEGYKEVL--TDRAIAVSSVLIMISIgGF 349
                 67777777766.77777777777777766653..3333222..22333333344456655444332211111111111..1223333334444444236 PP

    CRT-like 273 NilillvlkhagatvlsiastlrlPltnivfslkfivgkevtplsaldvaglliillGlvl 333
                 N + l v +  +at  si+ t r   t ++++++   g   + ++ l+v+g+ +++ G +l
  KKY19708.1 350 NFFGLSVTRSISATSRSIIDTCR---TLFIWIISLALGW--ESFKWLQVIGFAMLVYGTFL 405
                 88888888888888888888877...5566777777676..67778888888888777665 PP

>> SLC35F  Solute carrier family 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   5.8   0.00018      0.47      73     224 ..     134     291 ..     130     309 .. 0.74
   2 ?    3.9   1.5     0.012        31     229     297 ..     340     406 ..     323     408 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00018
      SLC35F  73 wykylllal...vdveanylvvkayqytsltsvqlldcfaipvvlvlswlflkvryrlvkiigvvvcilGvvllvvs.dvlagrransgsnpvlGdllv 167
                 +++ +lla+    d+ +  l+     + +    q+     i  v ++s +fl+ + +l +  ++++ ++Gv+l+  +  ++ g+ +       lG    
  KKY19708.1 134 GWRLILLAIpasCDITGTTLMNVGLLFVAASIYQMTRGALILFVGLFSVIFLRRKIHLYQWTALFIVVIGVALVGLAgAIFKGDTN-VPPSDGLGPSDE 231
                 56666665433356666666555555555555555556667778899*************************99665167788877.555567898889 PP

      SLC35F 168 laGatlyavsnvleeylvkklslvellgllglfGaiisaiqlailerkelkaih...Wda 224
                 la     a s  +e  +v+++  v l+++  +f a    +   ile+ +l+ ++   W+ 
  KKY19708.1 232 LAKMVRDATSAATEPAVVNTVIGVLLIAFAQIFTATQFCVEEWILEQYALEPLKvvgWEG 291
                 99999999**************************************98876554111543 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.012
      SLC35F 229 lfvgfalvlfllysllpilikktsatsvnlslltsdlyslliglflfhykvswlyllafvviliGlily 297
                 +++  +++ f ++ l   + +  sats ++      l+  +i l l  + ++wl ++ f++++ G +l+
  KKY19708.1 340 VLIMISIGGFNFFGLS--VTRSISATSRSIIDTCRTLFIWIISLALGWESFKWLQVIGFAMLVYGTFLF 406
                 4455555556666654..67888999999888888899999999999999***********99999987 PP

>> DMT_6  Putative member of DMT superfamily (DUF486)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   1.1    0.0049        13      70     104 ..     172     207 ..     139     208 .. 0.82
   2 ?   -3.0   0.1       3.4   8.6e+03      84     103 ..     245     264 ..     240     266 .. 0.73
   3 ?    6.4   0.3    0.0039        10      57     103 ..     360     405 ..     328     407 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0049
       DMT_6  70 tlvvfv.lfsvlllkeklklnhlvaflllvlavyfv 104
                 +l++fv lfsv++l++k++l + +a +++v++v +v
  KKY19708.1 172 ALILFVgLFSVIFLRRKIHLYQWTALFIVVIGVALV 207
                 455555379***********************9987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.4
       DMT_6  84 eklklnhlvaflllvlavyf 103
                 e+  +n+++++ll++ a +f
  KKY19708.1 245 EPAVVNTVIGVLLIAFAQIF 264
                 55667888888888888776 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0039
       DMT_6  57 lslaqlkiiqevitlvvfvlfsvlllk.eklklnhlvaflllvlavyf 103
                 +s++   ii+ + tl ++  +  l+l+ e++k+ ++++f++lv + ++
  KKY19708.1 360 ISATSRSIIDTCRTLFIW--IISLALGwESFKWLQVIGFAMLVYGTFL 405
                 555556667777776554..55666776***************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.37s 00:00:01.08 Elapsed: 00:00:00.57
# Mc/sec: 2325.01
//
Query:       KKY19709.1  [L=1225]
Description: putative eukaryotic translation initiation factor 3 subunit clu1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-76  254.5   0.0    1.7e-75  253.7   0.0    1.4  1  CLU        Clustered mitochondria
    1.3e-49  168.6   0.0    3.6e-49  167.2   0.0    1.8  1  eIF3_p135  Translation initiation factor eIF3 subunit 135
    3.9e-25   88.0   0.2    1.5e-24   86.1   0.2    2.1  1  CLU_N      Mitochondrial function, CLU-N-term
    5.7e-20   71.4  10.5    8.9e-10   38.7   0.3    4.3  5  TPR_12     Tetratricopeptide repeat
    3.1e-19   68.2   4.7    2.6e-06   27.1   0.0    5.6  5  TPR_10     Tetratricopeptide repeat
    7.4e-06   26.0   0.0    2.3e-05   24.4   0.0    1.8  1  DUF727     Protein of unknown function (DUF727)
    0.00044   20.1   0.8        1.7    8.9   0.1    4.3  3  TPR_2      Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.046   13.9   5.2      0.065   13.5   0.4    3.4  4  TPR_8      Tetratricopeptide repeat
       0.19   12.1   5.5        3.8    7.9   0.8    3.0  2  BRF1       Brf1-like TBP-binding domain


Domain annotation for each model (and alignments):
>> CLU  Clustered mitochondria
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.7   0.0   8.3e-79   1.7e-75       1     221 []     290     512 ..     290     512 .. 0.99

  Alignments for each domain:
  == domain 1  score: 253.7 bits;  conditional E-value: 8.3e-79
         CLU   1 DWNeefqslrelpketlqerlereralsklasdFveaAtkgakaiikenilplnpkekpggqkylvnniffsfavDakgsyeslggdeaarkaagkdLk 99 
                 DWNeefq++relpk+++q+r+ rer++skl +d+++aA++ga+ +++++++plnp+e +++q++++nniffsf++D  ++++s ggdeaar+a gkd+ 
  KKY19709.1 290 DWNEEFQTTRELPKDNVQDRVFRERLTSKLFADYNDAAARGAVLVARGEVAPLNPTEGRDAQIFVYNNIFFSFGADGVQTFSSEGGDEAARVAVGKDVM 388
                 9************************************************************************************************** PP

         CLU 100 glkllnrldvkglytlltaivDYrGkRliaqsllPgilkkekei..tivYGssdggktvhsdeefhellkkvakalnlkehkvkdeegkevklylsadi 196
                 g+k++n+ld++glyt++t++vDY GkR++ qs++Pgi+k+++    +i YG ++g + v++++ f e+++k++kal++k+h+v+d+egk ++l +s+++
  KKY19709.1 389 GVKVVNQLDIQGLYTPGTVVVDYLGKRIVGQSIVPGIFKQREPGepQIDYGGVEGREVVAENQAFVEVFEKLSKALRVKKHSVWDKEGKLHELEGSVET 487
                 ***************************************8887788***************************************************** PP

         CLU 197 kgivgsDgrkYllDlarlfPpdvnf 221
                 kg++g+DgrkY+lDl+r++P+d+ +
  KKY19709.1 488 KGLLGTDGRKYVLDLYRITPLDIVW 512
                 **********************865 PP

>> eIF3_p135  Translation initiation factor eIF3 subunit 135
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.2   0.0   1.8e-52   3.6e-49       3     174 ..     660     820 ..     658     822 .. 0.97

  Alignments for each domain:
  == domain 1  score: 167.2 bits;  conditional E-value: 1.8e-52
   eIF3_p135   3 apiDGqsLtelLHkrGINvRYLGkvakklekeeakarlealkrllvqEmiaRaaKhilrkylqsvealllsaavshflnClLgseenskpkvsidellk 101
                 +p+DG+sL++lLHkrGINvRYLG+v+k +e++   +rl+al  l++qEm+aRa+Khi ++yl++++++ +  + sh+lnClL s++ + p ++ide l+
  KKY19709.1 660 FPMDGASLSQLLHKRGINVRYLGRVTKLAEDKG--KRLKALVALAIQEMVARAFKHISNSYLRHLPTPFITLCYSHLLNCLLDSSSDAVPVAEIDEDLR 756
                 8*************************9777766..9*************************************************************** PP

   eIF3_p135 102 klykkkkkkknkkkesewtkltpeslweqiekevkarfryeleedsieeelkkislLReiclkvGiqlllreY 174
                 +ly+    + ++    ++ kl+++sl +q+e++v++r+ry+l++ +++ +lk+++ LRei+lk G+ql +r+Y
  KKY19709.1 757 ELYP----EGDF----SFDKLNRDSLKSQVESQVRRRYRYTLPDGWLD-SLKPLQTLREIALKQGLQLCARDY 820
                 ****....6777....9*******************************.************************ PP

>> CLU_N  Mitochondrial function, CLU-N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.2   7.7e-28   1.5e-24       2      79 .]       5      77 ..       4      77 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 7.7e-28
       CLU_N  2 setvqdlrqvLselpstkylTnyhLkyengngerlnefvtlseiieeedvdelkLelkekpYterealeHvlrfReli 79
                +e+vqd+rq+++e p t+++T++hL++   ng+r+n+f +lse+  ++ + + +++l+e+pYte+ea+ H++r+Reli
  KKY19709.1  5 QEQVQDVRQSIIEQPGTFQYTCFHLEH---NGQRINDFIELSEV--KGLKADSEITLVEDPYTEKEARTHFVRIRELI 77
                89***********************99...78************..8888**************************98 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       6.9   1.4e+04      21      41 ..      65      83 ..      64      87 .. 0.80
   2 !   24.2   0.9   1.6e-08   3.2e-05      20      71 ..     908     959 ..     891     965 .. 0.89
   3 !   32.5   0.2   4.1e-11   8.1e-08       2      69 ..     974    1041 ..     973    1041 .. 0.95
   4 !   38.7   0.3   4.5e-13   8.9e-10       3      74 ..    1017    1088 ..    1015    1089 .. 0.96
   5 ?   -2.4   0.0       3.1   6.1e+03      61      73 ..    1100    1112 ..    1098    1129 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6.9
      TPR_12 21 eAlellekaleiarrllGpdh 41
                eA++++ + +e++ ++  +d+
  KKY19709.1 65 EARTHFVRIRELIAAA--GDR 83
                999*****99999877..555 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 1.6e-08
      TPR_12  20 deAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                 +  +el  ++l ++++++G  hp++a  ++ L++ly+++++ ++A+el ++a
  KKY19709.1 908 QLGQELILESLSLHEQIYGILHPEVAKMYHQLSMLYYQTDEKDAAVELARKA 959
                 4789999*******************************************99 PP

  == domain 3  score: 32.5 bits;  conditional E-value: 4.1e-11
      TPR_12    2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelle 69  
                  +  a+ nl +++++  +   Al + ++al++++ ++Gp hp+ +tt++n + +++ l++y + + ++e
  KKY19709.1  974 TILAYLNLSLFEHAVSNTSTALHYVRHALALWKIIYGPSHPDSITTMNNAAVMLQHLKQYSASRHWFE 1041
                  567889*********************************************************99997 PP

  == domain 4  score: 38.7 bits;  conditional E-value: 4.5e-13
      TPR_12    3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74  
                   t++nn a++l++l++y  ++ ++e+++ i++ l+G ++ +tat+l+ L++++ +  + ++A++  +ea++i
  KKY19709.1 1017 ITTMNNAAVMLQHLKQYSASRHWFEASMHICEDLFGRQSVNTATILFQLAQALALDQDSKAAVSKMREAYNI 1088
                  57889************************************************9999************998 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 3.1
      TPR_12   61 yeeAlelleeala 73  
                  ++eA+++le+ ++
  KKY19709.1 1100 TKEAESWLEQLTQ 1112
                  5677777777554 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.31   6.1e+02      14      41 ..     903     930 ..     896     931 .. 0.77
   2 !   27.1   0.0   1.3e-09   2.6e-06       2      42 .]     933     973 ..     932     973 .. 0.94
   3 !   16.6   0.0   2.6e-06    0.0052       2      42 .]     975    1015 ..     974    1015 .. 0.95
   4 !   20.0   0.0   2.3e-07   0.00046       3      38 ..    1018    1053 ..    1016    1057 .. 0.94
   5 ?   -0.1   0.0      0.47   9.3e+02       1      39 [.    1058    1096 ..    1058    1099 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.31
      TPR_10  14 qrgrydeAealleealairrrllGpdHP 41 
                 ++++ +   +l  e+l+++++++G  HP
  KKY19709.1 903 AQNQKQLGQELILESLSLHEQIYGILHP 930
                 5666666667889***********8777 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 1.3e-09
      TPR_10   2 AsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 A  ++ L+++++q+ + d+A++l+++a+ + +r+lG d+ d
  KKY19709.1 933 AKMYHQLSMLYYQTDEKDAAVELARKAVIVTERTLGVDSAD 973
                 7789********************************99865 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 2.6e-06
      TPR_10    2 AsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42  
                    ++ NL+   +++ +   A+ + ++ala+++ ++Gp HPd
  KKY19709.1  975 ILAYLNLSLFEHAVSNTSTALHYVRHALALWKIIYGPSHPD 1015
                  56899***********************************9 PP

  == domain 4  score: 20.0 bits;  conditional E-value: 2.3e-07
      TPR_10    3 sslnNLanalrqrgrydeAealleealairrrllGp 38  
                  +++nN a++l+++++y +++ ++e ++ i++ l+G+
  KKY19709.1 1018 TTMNNAAVMLQHLKQYSASRHWFEASMHICEDLFGR 1053
                  89*********************************7 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.47
      TPR_10    1 tAsslnNLanalrqrgrydeAealleealairrrllGpd 39  
                  tA++l  La al   ++ ++A+  ++ea++i    lGp+
  KKY19709.1 1058 TATILFQLAQALALDQDSKAAVSKMREAYNIFHTELGPN 1096
                  566666788888888888888888999999999999988 PP

>> DUF727  Protein of unknown function (DUF727)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.1e-08   2.3e-05      24      94 ..     159     229 ..     145     235 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.1e-08
      DUF727  24 klpsteeviylnvetlEgeelcvelsakGfrvvsskydeveeeeekedeekyfetlyaLLdkiSpeyrekF 94 
                 +l+++ +++yl+v+t Ege++ v  s++Gf v  s+ ++ + + + + ++    +l +LL+k+Sp+++++F
  KKY19709.1 159 SLRQKGHLMYLQVTTNEGEQFQVTASVSGFFVNRSSSNKFDPFPRPAPKSCQAHSLLSLLSKLSPSFSSAF 229
                 5788999*********************************99999999999999***************99 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   0.00086       1.7       3      28 ..     935     960 ..     933     964 .. 0.91
   2 ?    2.7   0.0     0.089   1.8e+02       5      30 ..    1021    1046 ..    1018    1050 .. 0.85
   3 ?    3.6   0.1     0.044        88       2      30 ..    1060    1088 ..    1059    1091 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00086
       TPR_2   3 alynlGlayyklgdyeeAleafekAl 28 
                  +++l ++yy+ ++ + A+e+ +kA+
  KKY19709.1 935 MYHQLSMLYYQTDEKDAAVELARKAV 960
                 5999********************97 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.089
       TPR_2    5 ynlGlayyklgdyeeAleafekAlel 30  
                  +n +  + +l++y   +++fe++  +
  KKY19709.1 1021 NNAAVMLQHLKQYSASRHWFEASMHI 1046
                  789999***************97665 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.044
       TPR_2    2 ealynlGlayyklgdyeeAleafekAlel 30  
                   +l++l++a++  +d + A+  +++A  +
  KKY19709.1 1060 TILFQLAQALALDQDSKAAVSKMREAYNI 1088
                  689**********************9876 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   3.2e-05     0.065       1      28 [.     933     960 ..     933     960 .. 0.96
   2 ?   -1.6   0.0       2.2   4.4e+03       4      26 ..    1020    1042 ..    1018    1047 .. 0.86
   3 ?   -0.1   0.1      0.75   1.5e+03       2      28 ..    1060    1086 ..    1059    1088 .. 0.83
   4 ?   -3.8   0.0         9   1.8e+04      17      27 ..    1100    1110 ..    1099    1112 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.2e-05
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekal 28 
                 a++y++l+++y ++ ++++A+e  +ka+
  KKY19709.1 933 AKMYHQLSMLYYQTDEKDAAVELARKAV 960
                 789***********************96 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.2
                  HHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_8    4 yynlgsiylklgdyeeAkeyyek 26  
                  ++n +  ++ l++y ++  ++e 
  KKY19709.1 1020 MNNAAVMLQHLKQYSASRHWFEA 1042
                  5788899999*******999986 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.75
                  CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8    2 eayynlgsiylklgdyeeAkeyyekal 28  
                   ++++l++++   +d ++A++ +++a 
  KKY19709.1 1060 TILFQLAQALALDQDSKAAVSKMREAY 1086
                  6899******99999999998777775 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 9
                  HHHHHHHHHHH CS
       TPR_8   17 yeeAkeyyeka 27  
                   +eA++++e+ 
  KKY19709.1 1100 TKEAESWLEQL 1110
                  689**999986 PP

>> BRF1  Brf1-like TBP-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.8    0.0019       3.8      25      69 ..     543     587 ..     537     615 .. 0.67
   2 ?    4.8   0.3     0.017        34      30      68 ..     818     857 ..     794     908 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0019
        BRF1  25 WvelnkeyLeeqeekrlkeeaeeaeadkkkkkkkrkrkkkekkkg 69 
                 W    + y++e+ ekr++++++eae+ k + +++++++ +++kk+
  KKY19709.1 543 WRLKMQAYVKEEVEKRRAAKKAEAETVKDQGSEEQQTEGDTEKKA 587
                 7777889***99999999999999966666655555444444332 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.017
        BRF1  30 keyLe..eqeekrlkeeaeeaeadkkkkkkkrkrkkkekkk 68 
                 ++y     q  k+++  ++  +++ +kkkkk+    +e+++
  KKY19709.1 818 RDYFShkTQLTKEEAPTTNGTNHEDNKKKKKK-VAVTEQTN 857
                 67777434666666666666663333333333.33333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1039  (0.0579508); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.52
# Mc/sec: 7119.05
//
Query:       KKY19710.1  [L=510]
Description: hypothetical protein UCRPC4_g04411 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-07   31.8   0.7    3.6e-07   30.7   0.2    1.8  2  AAA_16           AAA ATPase domain
     0.0061   16.1   0.0       0.01   15.4   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
     0.0075   15.5   0.0      0.013   14.7   0.0    1.3  1  DUF815           Protein of unknown function (DUF815)
       0.01   15.2   0.4        1.6    8.1   0.0    2.4  3  DUF3388          Protein of unknown function (DUF3388)
  ------ inclusion threshold ------
      0.014   14.7   0.0       0.08   12.2   0.1    1.9  2  M-inducer_phosp  M-phase inducer phosphatase
      0.017   14.7   0.1        0.1   12.2   0.0    2.1  2  AAA_25           AAA domain
      0.095   12.5   0.0       0.18   11.5   0.0    1.4  1  AAA_29           P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.2   1.4e-10   3.6e-07       2     165 ..      81     236 ..      80     243 .. 0.72
   2 ?   -3.2   0.0       3.8   9.8e+03     117     145 ..     374     388 ..     326     406 .. 0.58

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.4e-10
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrek 100
                 +v Ree++ ++ ++l+   +g  ++ ll+Ge+G+GKss++ e++r +e++g+  +++++d     i ++ l +al++ e+ ++    + s   +++ ++
  KKY19710.1  81 WVQREEQT-RIDQILSGQVTG--HYHLLIGEKGTGKSSMLIEAMRKVEGEGISMFEAHADLE---IFRIRLGKALDF-EFHEDYIGSLFSIRGPRDTTA 172
                 77888886.999999977777..89*************************888899999988...444557777766.777777777666555555555 PP

      AAA_16 101 leealaavpelagaeasrllellkrllallsrderplvlvlDdlq..wadeaslqllaaLlrlles..k 165
                 l++  +a ++l     + ++ + k+  +++ ++ rplvlv+  ++  + d++ ++ll+ L +++e+   
  KKY19710.1 173 LLDIERAFNKL-----EKIALKRKHSHQRAGQKPRPLVLVVNCVHliRDDDDGRDLLEVLQQRAEAwaA 236
                 55543322222.....3333333333355555555**********667777**********99987653 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.8
      AAA_16 117 srllellkrllallsrderplvlvlDdlq 145
                  r ++l+++              +lDd +
  KKY19710.1 374 DRTNDLVTH--------------TLDDSH 388
                 222222222..............333333 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     4e-06      0.01       8      61 ..      76     128 ..      69     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4e-06
       AAA_7   8 kfseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkek 61 
                 + se  V+  +++r++ +l+  ++ +++ ll+G++GtGK++++ + ++k++ e 
  KKY19710.1  76 DSSEHWVQREEQTRIDQILSGQVTGHYH-LLIGEKGTGKSSMLIEAMRKVEGEG 128
                 567788999999*******999998776.779*************999998665 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.1e-06     0.013      46      88 ..      92     135 ..      81     143 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.1e-06
      DUF815  46 qfleglpa.nnvLLwGarGtGKSslvkallneyaeegLrlieve 88 
                 q l+g+ + +  LL+G++GtGKSs++  ++++++ eg+ + e +
  KKY19710.1  92 QILSGQVTgHYHLLIGEKGTGKSSMLIEAMRKVEGEGISMFEAH 135
                 556665541557*************99999*******9999876 PP

>> DUF3388  Protein of unknown function (DUF3388)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       2.8   7.1e+03      35      63 ..      84     112 ..      75     115 .. 0.68
   2 !    8.1   0.0   0.00061       1.6      42     130 ..     294     382 ..     292     393 .. 0.85
   3 !    4.5   0.0    0.0074        19      96     135 ..     404     443 ..     395     447 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2.8
     DUF3388  35 reelgllvdflaellkkeghkliGirGmP 63 
                 ree   +  +l+  +  + h liG +G+ 
  KKY19710.1  84 REEQTRIDQILSGQVTGHYHLLIGEKGTG 112
                 55544444566777778889999988875 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00061
     DUF3388  42 vdflaellkkeghkliGirGmPrvGktesivaasvcankrwlflsstllkqtvrsqliedeynednifiidgivsarranekhlqlire 130
                 vd+l+e++k+ g +l  +  + +     s   a   a+k w +    +l + + +++++d+  ++   ++  ++  ++ +++  +l+  
  KKY19710.1 294 VDVLTEVYKRVGGRLSYLSRVAKSKDMLSTCDAINRAEKTWFLNKCWILGESMDDDVMDDQKYSSAAMVLAKALVEKEREDRTNDLVTH 382
                 899***********9988877777777788888899************************98888888888877788888888888865 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.0074
     DUF3388  96 sqliedeynednifiidgivsarranekhlqlireimrlp 135
                    + ++y++dnif id+   +r  +   ++  rei + p
  KKY19710.1 404 RADFIKIYDHDNIFTIDSNAMVRADSVPMMNAFREICTQP 443
                 44445699**********9999999999999999998877 PP

>> M-inducer_phosp  M-phase inducer phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.24   6.2e+02     124     166 ..     190     231 ..     181     240 .. 0.73
   2 ?   12.2   0.1   3.1e-05      0.08     160     224 ..     344     406 ..     342     413 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.24
  M-inducer_phosp 124 pekkeeelesessplflrrssltsslneddedDG..fleiLdddl 166
                      ++++++ ++++  pl+l   +++      d+dDG  +le+L++  
       KKY19710.1 190 RKHSHQRAGQKPRPLVLVVNCVHLI---RDDDDGrdLLEVLQQRA 231
                      4455555557888999888888877...67788766899999854 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 3.1e-05
  M-inducer_phosp 160 eiLdddlendeevpsgmasLltAPLvkdkekeeeqslvirsrprrlfrspSmpssvirpilKRle 224
                      e +ddd+ +d++ +s  a  l+  Lv+++ ++++++lv++       r pS p ++ r+i+ R++
       KKY19710.1 344 ESMDDDVMDDQKYSSA-AMVLAKALVEKEREDRTNDLVTHT-LDDSHRLPSIPLHIARQIMTRAD 406
                      6799999999877665.5566667***99999999***999.99999***************998 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.9e-05       0.1      10      60 ..      77     128 ..      69     148 .. 0.81
   2 ?   -0.9   0.1      0.39     1e+03     104     146 ..     203     243 ..     169     244 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.9e-05
      AAA_25  10 vsvad.laapppprrwlvkgllpagelallaGapgtGKttlaldlalava.tG 60 
                 +s ++  + ++++ ++++ g +  g+ +ll+G  gtGK+ ++++ + +v  +G
  KKY19710.1  77 SSEHWvQREEQTRIDQILSGQV-TGHYHLLIGEKGTGKSSMLIEAMRKVEgEG 128
                 5566634458999999999996.8*******************9998886555 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.39
      AAA_25 104 lvldlagv.eslpLfakdrggtlltadvdaleaaieevegvrlv 146
                 +++    v  +++L+ +d++g  l +++++ ++a  +++ v +v
  KKY19710.1 203 PLVL---VvNCVHLIRDDDDGRDLLEVLQQRAEAWAAANLVTMV 243
                 2333...3357899999888888777777777766665556555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.2e-05      0.18      21      39 ..      98     117 ..      87     124 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.2e-05
      AAA_29  21 lkg.atlltGpsGsGKSTll 39 
                 + g  +ll+G+ G+GKS++l
  KKY19710.1  98 VTGhYHLLIGEKGTGKSSML 117
                 456689***********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.34s 00:00:01.02 Elapsed: 00:00:00.52
# Mc/sec: 2935.16
//
Query:       KKY19711.1  [L=489]
Description: putative proteasome regulatory particle subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-20   71.9   0.0    1.5e-19   70.5   0.0    1.8  1  PCI       PCI domain
    4.4e-15   55.5   0.2    1.2e-14   54.0   0.2    1.8  1  RPN5_C    26S proteasome regulatory subunit RPN5 C-terminal d


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   1.7e-23   1.5e-19       5     105 .]     329     441 ..     327     441 .. 0.87

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 1.7e-23
                 HHHHHHHHTSHHHHHHHHHHH............HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSS CS
         PCI   5 dllkalrsgnlsgfseelkdl............eeelladdglaqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIrdgeir 91 
                 +llk ++  +l++++   +++            ++   ++++ ++    L+++v+e+++r ++k+y++i++ rl+ lldls++e+Ek++++l+ ++ i+
  KKY19711.1 329 ALLKLFTVHELMRWPIVAEKFgphlcstdvfaaSSSDGKEEKANTRFLALRNRVIEHNVRVIAKYYTRITFPRLTALLDLSEEETEKYISDLVTNKTIY 427
                 699******************555555555555444444455555999*************************************************** PP

                 EEEETTTTEEEECS CS
         PCI  92 akidqesgivvfkk 105
                 a+id+++++v+f+k
  KKY19711.1 428 ARIDRPARTVSFEK 441
                 ************96 PP

>> RPN5_C  26S proteasome regulatory subunit RPN5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.2   1.4e-18   1.2e-14       1      33 []     446     478 ..     446     478 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 1.4e-18
      RPN5_C   1 NevLNeWssninkLLelvekttHLInKEeMvhk 33 
                 ++vLNeWs +++ LL l+e+++HLI+KEeM+++
  KKY19711.1 446 DDVLNEWSGSVKGLLGLLERIDHLITKEEMMAR 478
                 79*****************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1088  (0.0606838); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.51
# Mc/sec: 2884.32
//
Query:       KKY19712.1  [L=913]
Description: hypothetical protein UCRPC4_g04413 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   15.1   3.1      0.023   14.2   3.1    1.3  1  Frag1      Frag1/DRAM/Sfk1 family
       0.46    9.9   6.0       0.99    8.8   6.0    1.5  1  Caa3_CtaG  Cytochrome c oxidase caa3 assembly factor (Caa3_Ct


Domain annotation for each model (and alignments):
>> Frag1  Frag1/DRAM/Sfk1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   3.1   2.6e-06     0.023      46     164 ..     666     798 ..     644     816 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.6e-06
       Frag1  46 digatnpeslffslalnlglflvilvallrfqrlpplatksern.lnfaalvlgligalglllvsifstaeyhsvHlvgavvffvfgflyvllqtalyy 143
                 ++ +  p sl+ s + +l+ ++ +    lr ++++ l++ +    l +++l++ li +l  +++++ s++++h+ H++  ++++ ++f   +++ +++y
  KKY19712.1 666 AVYNLLPMSLILSSISTLTNLFGVRESTLRLKIMRFLISPKTLTiLHILILIFTLI-SLLFGILANGSASHFHTPHQILGFFMVGMVFATSVCHLYISY 763
                 33333444455555555555555555555555566555544433799999999999.5667899*********************************** PP

       Frag1 144 kmgrhy..............vwnkstisfrlkvvl 164
                 +  +++              +++++ +++ +k++ 
  KKY19712.1 764 SAPTSNgaqgedtdlankteQTPEESLTGSMKFLS 798
                 99888788888888887777666666666666544 PP

>> Caa3_CtaG  Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   6.0   0.00011      0.99      70     150 ..     672     758 ..     658     767 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00011
   Caa3_CtaG  70 Pvtlllralpral..re.llrllrsrvlrvlthPlvalllfvallyllylpplfdaal...rsealhalmhlhfllaGllfwwpvlg 150
                 P++l+l  +   +  +  + + lr +++r+l +P + ++l++++l++  ++ lf ++    +s++    + l f+++G++f  +v++
  KKY19712.1 672 PMSLILSSISTLTnlFGvRESTLRLKIMRFLISPKTLTILHILILIFTLISLLFGILAngsASHFHTPHQILGFFMVGMVFATSVCH 758
                 77777777775447744468899999******************************98333455555567789********999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (913 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.49
# Mc/sec: 5620.68
//
Query:       KKY19713.1  [L=616]
Description: hypothetical protein UCRPC4_g04414 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-17   64.0   0.6    2.4e-16   59.6   0.5    2.0  2  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.5   1.3e-20   2.4e-16       2     105 ..     299     383 ..     298     405 .. 0.91
   2 !    2.5   0.0    0.0034        61     221     266 ..     398     447 ..     388     448 .. 0.86

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 1.3e-20
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLl 98 
                   d+ff+ f++ +p+lh+ +f+p+           ++pll++++l lGa++s  +++++           i++ lr +i++h++f  +++ lw+lq+ l
    KKY19713.1 299 DLFFTRFNSAYPLLHQATFDPSQ----------NEPLLAISVLLLGATYSTRNAHQM------A--VGIHDTLRPRIFSHPSFAAQPD-LWVLQTIL 376
                   79*********************..........***********************7......4..6*****************9999.******** PP

  Fungal_trans  99 llelyek 105
                   l+e++ +
    KKY19713.1 377 LVECFVL 383
                   ***9865 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.0034
  Fungal_trans 221 llaLkkilskiagsllsiekqlqqrdlq......seklswveeleraldnWr 266
                   l+aL++i+  ++g l+s+ ++l++rd+       +    w+ ++ r++d W 
    KKY19713.1 398 LNALSRIVL-LHG-LMSVAWDLRRRDQTslgadgDALGTWKARIARSYDLWL 447
                   667777763.667.*******************99999************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4222.26
//
Query:       KKY19714.1  [L=415]
Description: putative 12-oxophytodienoate reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-85  286.0   0.0    1.5e-83  280.9   0.0    2.0  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.9   0.0   8.6e-88   1.5e-83       2     342 .]      18     383 ..      17     383 .. 0.85

  Alignments for each domain:
  == domain 1  score: 280.9 bits;  conditional E-value: 8.6e-88
                   CCS-EEETTEEESSSEEE----S-TTTTT.CS.HH..HHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-E CS
  Oxidored_FMN   2 LFkPikignmtLknRivmapmtrlraldk.gnvle..dlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengsk 95 
                   LF+P+ +g  +L++R+++ap+tr+ra+++ + v    dl++eyy qra+ +++l itea+++++   g+++ pgi++++qi +w+ +t+avh++g+k
    KKY19714.1  18 LFTPLSVGAIELEHRVIQAPLTRMRAEEEvPHVYVpgDLMVEYYGQRAS-KGGLQITEATSISKYCCGYPKVPGIFTASQITGWKRVTDAVHAKGGK 113
                   9************************987633333335************.99********************************************* PP

                   EEEEEE--GGGS..SCSTCEC...SS.ESSSSSTTT-.S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TTT---- CS
  Oxidored_FMN  96 vvvqlwhlGreakseyladqe.vdspsdpvaldaqeeesaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspksnkrt 191
                   +v q+wh Gr+  s  l  +    +   p+    q  +  +++ ++++tk e++++  +fv AAk+a eAgfDgVeihganGYLl+qFl+ + n+rt
    KKY19714.1 114 IVCQIWHVGRATISSVLDGKTpISCTTIPISGAHQDGTLYSDCPPRQMTKGEMQEIKGDFVSAAKNALEAGFDGVEIHGANGYLLDQFLHDNVNTRT 210
                   ***********9877666555566777666666665566677779**************************************************** PP

                   STTSSSHHHHHHHHHHHHHHHHHHH-SSSEEEEEECE--STTS--HHHHHHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCC....TTHHH CS
  Oxidored_FMN 192 DeygGslenRarFllevvdaVkeavgeervgyRlSpedvvekgldfaetaqkivllkelekrlkdgkklalvhaaeprkrgagsvrte....qeknt 284
                   DeygGs+enRarF+lev++aV ea+g +rvg+Rl p++++++ +d+  + ++   + e++  +++  +l++v  +epr  +    + +    +   +
    KKY19714.1 211 DEYGGSVENRARFPLEVIKAVGEAIGGDRVGIRLTPYNYFQDTKDSKPV-EHWSYICEQIAAMPEQYRLSYVSSVEPRFDEVLDEKAKmdalH---A 303
                   ******************************************9999888.7788888888888888899999888887554433333321221...1 PP

                   .......................HHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCTCGG CS
  Oxidored_FMN 285 .......................efvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkglpln 342
                                           ++ +     + ++g++ +++ a+  v+ + ad + +gR+ +a+pdl+++l++glpln
    KKY19714.1 304 ynnlpggveaeatvptahdlapfRKILKKGGIKFFAAGNFSRDN-ATPKVEADGADGIIFGRHYIANPDLPDRLRQGLPLN 383
                   12234455555556777777655444444456799*********.999999***************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 2692.91
//
Query:       KKY19715.1  [L=1467]
Description: putative xanthine dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.9e-197  657.1   0.3   2.6e-197  656.6   0.3    1.1  1  Ald_Xan_dh_C2  Molybdopterin-binding domain of aldehyde dehyd
    1.2e-41  142.3   0.1    2.6e-41  141.2   0.1    1.6  1  FAD_binding_5  FAD binding domain in molybdopterin dehydrogen
    8.9e-34  115.8   0.1      1e-32  112.4   0.0    2.6  2  CO_deh_flav_C  CO dehydrogenase flavoprotein C-terminal domai
    8.7e-27   93.7   0.0    3.3e-26   91.8   0.0    2.0  2  Ald_Xan_dh_C   Aldehyde oxidase and xanthine dehydrogenase, a
    5.9e-26   90.3   0.1    1.6e-25   88.9   0.1    1.8  1  Fer2_2         [2Fe-2S] binding domain
    1.5e-06   28.0   0.6    3.2e-06   27.0   0.0    1.9  2  Fer2           2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> Ald_Xan_dh_C2  Molybdopterin-binding domain of aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  656.6   0.3  8.7e-201  2.6e-197      18     550 .]     847    1371 ..     830    1371 .. 0.97

  Alignments for each domain:
  == domain 1  score: 656.6 bits;  conditional E-value: 8.7e-201
                     HHHHHHH-S.EEEEEEEEEEBE---SS--EEEEEEETCTTEEEEEES-SSHHHHHHHHHHHHT--GGGEEEE-SB-S--TTTT.SS--HHHHHH CS
  Ald_Xan_dh_C2   18 veaafaeadhvvegefrtgrqehfylEtqaalavpddedgeltvysstqaphevrrlvaevlglpenkvrvivprvGGGFGgK.tqsvplevla 110 
                      e+ ++++d+++ege r+g+qehfylEt+aa+a+p  edg ++v+s+tq+++ev+++va+vlg+p+nkv+ +v+r+GGGFGgK +++v+l++l+
     KKY19715.1  847 LEDIWSTCDRIFEGESRVGGQEHFYLETHAAMAIPGSEDGFMEVWSTTQNTMEVQEFVAQVLGVPSNKVNSRVKRMGGGFGGKeSRPVQLSCLL 940 
                     588999**************************************************************************************** PP

                     HHHHHHHTS-EEEE--HHHHHHHS-EEEEEEEEEEEEE-TTS-EEEEEEEEEEEESSTHHHCHCCHCCTTGGGTTTB--SEEEEEEEEEE-SSS CS
  Ald_Xan_dh_C2  111 alaAkktgrpVklvldReedmlatgkrhpfkikykvgadkdGkitaldvdlladaGayadlspavleralshldgpYkipnvrvegrvvytNtp 204 
                     a+aAkk +rpV+++l+R+edm++tg+rhp+ +++kvg+++dGk++al++ ++++aG++ d+s av++r+ +hl+++Y+ipnv ++g++++tNt+
     KKY19715.1  941 AIAAKKEKRPVRCMLNRDEDMMTTGQRHPIMARWKVGCTNDGKLLALQAFVYNNAGYSHDMSGAVMDRCQTHLENCYQIPNVWIKGHLCKTNTH 1034
                     ********************************************************************************************** PP

                     -EE-SSTTTHHHHHHHHHHHHHHHHHHHT--HHHHHHHHBCECGCC.SEEETEESSS-HHHHHHHHHHHHTHHHHHHSCCHHCCT..ECEEEEE CS
  Ald_Xan_dh_C2  205 pntafRGfGgpqamfalErlmdelAeelgldplelRrrNlikpgeltpygqpvydsgdlpelldklkessdyeerraeqaefnag..wkkrGig 296 
                     +nta+RGfGgpq+m+++E++m+++Ae l++d++elR +Nl+k+ge+tp+ q++ +++++p+l+ +lke+++ye r+a++a+fna+   kkrGi+
     KKY19715.1 1035 SNTAYRGFGGPQGMYIAECFMNAVAEGLNMDVDELRWKNLYKQGERTPFLQEIDQDWHVPQLVTQLKEEANYEVRKAAVAKFNAEhkYKKRGIC 1128
                     ****************************************************999****************************7777889**** PP

                     EEEEEEEBS--S..EETTEEEEEEEEE-TTS-EEEEESS--SSS-HHHHHHHHHHHHHT--GGGEEEE-SBTTSSS----S-TT-HHHHHHHHH CS
  Ald_Xan_dh_C2  297 lapvvegiglgf.takflnqegalvrvntdGsvtvstggtemGqGletklaqiaaeeLgvpledvrvvegdtdkvpngsgtaaSrstdlngnAv 389 
                     l+p+++g   +f ta +lnq++a ++v++dGs+++++ggtemGqGl+tk++q+aa+eL+vp++ + ++++++ + +n+s+taaS+++dlng+Av
     KKY19715.1 1129 LIPTKFGL--SFaTALHLNQATANIKVYADGSILLNHGGTEMGQGLYTKMVQVAAQELKVPVDAIFTQDTSSYQSANASPTAASSGSDLNGMAV 1220
                     ********..666889****************************************************************************** PP

                     HHHHHHHHHHHHHHHHHHCTS-CCCEEEETTEEEETEEEECHHHHHHHHHHTTSSEEEEEEE..........EEEETHCHC.SBBEEEEEEEEE CS
  Ald_Xan_dh_C2  390 kkAaeklrerllkiaaellevspedleledgkvvvkeksvslaelaaaaylervslsatgfykt.......ldeetgkgpp.fayfaygaavae 475 
                     k A+++l+erl+++ +   +  +++               s++++a+aayl+rv+lsatg++k+        +++ gk++p ++yf++ga+++e
     KKY19715.1 1221 KSACDQLNERLAPYWE---RYGADA---------------SMKTIAHAAYLDRVNLSATGHWKMprigftwNQWDVGKNKPmYYYFTQGAVCCE 1296
                     ****************...444444...............9***************************998677777777757899******** PP

                     EEEETTT--EEEEEEEEEEE-BS-S-HHHHHHHHHHHHHHHHHHHHT---EEETTTEESS-STTTS----GGGS- CS
  Ald_Xan_dh_C2  476 VevDtetgevkvlrvvivhDvGksiNpaivegQieGGfvqGiGlalmEelvydedGqlltasladYkiPtaadiP 550 
                      e+D +tg++++lr++i +DvG+siNpai++gQieG+++qG G+++mEe+++ +dG l t+++++YkiP ++diP
     KKY19715.1 1297 AELDLLTGDHTILRTDIKMDVGRSINPAIDYGQIEGAYIQGQGMFTMEETLWTRDGLLATRGPGNYKIPGFSDIP 1371
                     **************************************************************************9 PP

>> FAD_binding_5  FAD binding domain in molybdopterin dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.2   0.1   8.7e-45   2.6e-41       5     170 ..     360     541 ..     353     542 .. 0.96

  Alignments for each domain:
  == domain 1  score: 141.2 bits;  conditional E-value: 8.7e-45
                    EEE-SSHHHHHHHHHHCTTSEEESS-TTHHHHHHHTT---SEEEEGTTSGGGS-E........EEESSEEEEETTSBHHHHHHHHHHHHHHHHSH. CS
  FAD_binding_5   5 ylrpasleealallaaepdaklvaGgtdlgvlmkekvarpehliditgipelkei........eeteggleiGAavtlselaaealvrerypals. 91 
                    +lrp+sl+++l+++a +p+ak+v+G+ +++v++++k+ +    + +++i+el++i         +t ++l +GA++ l++l  e+++++ yp+l  
     KKY19715.1 360 WLRPTSLAQLLDIMAVYPSAKIVSGASEVQVEVRFKHSDFAVSVFVSDIEELNKItvpkaeadIQTMQELVVGANAPLTDL--EEVCNSLYPKLGt 453
                    9******************************************************88888665566899************..9************ PP

                    .........HHHHTSS-HHHHHH-BHHHHHHHT-TT-SSHHHHHHTTEEEEEEESSEEEEEECHHHEEETTEESS-TT-EEEEEEEE- CS
  FAD_binding_5  92 .........ealekiAspqiRnvaTiGGNlataspisDlapaLlaldAevelrsaegerevpleeflkgpgktalepgelitaveiPa 170
                             ++l+ +A++qiRn+a+i+GN+ataspisDl+p+L+a++A+v  ++ +ge  +p++ f+ ++++t l +g +i++v+iP 
     KKY19715.1 454 rgtvlkaiaKQLRYFAGRQIRNAASIAGNIATASPISDLNPVLMAAGATVIAENVDGEVVLPMKTFFLAYRTTSLPKGGVIKQVRIPL 541
                    ***************************************************************************************7 PP

>> CO_deh_flav_C  CO dehydrogenase flavoprotein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   0.0   3.4e-36     1e-32       3     103 .]     553     655 ..     551     655 .. 0.98
   2 ?    0.1   0.0       0.3   8.9e+02      54      98 ..    1210    1255 ..    1204    1260 .. 0.81

  Alignments for each domain:
  == domain 1  score: 112.4 bits;  conditional E-value: 3.4e-36
                    EEEESSSSSS-ESEEEEEEEEEETTCEECEEEEEEESSSSS-EE-HHHHHHHTTSBSSH.HHHHHHHHHHHTTCHHHTC.TTC-HHHHHHHHHHHH CS
  CO_deh_flav_C   3 yklsrrrendiaivnaAfrveleedgkiedariafggvaptpvraekaeaaLiGkplse.elleeaakaleeelspasd.prasaeYRrslavsll 96 
                    yk+++r+++diaivnaAfrv+l++dg++++a++ +gg ap ++ a+k+ +aLiG+++ e ++l +a+k+l++e++++ + p+++a YRr+la sl+
     KKY19715.1 553 YKQAKRKDDDIAIVNAAFRVRLSDDGIVTNASLIYGGLAPVTIEAKKTGQALIGRKWFEqATLGAALKSLSDEFNLRFGvPGGMASYRRTLALSLF 648
                    9*********************************************************************************************** PP

                    HHHHHHH CS
  CO_deh_flav_C  97 frfllea 103
                    fr+++e+
     KKY19715.1 649 FRYWHEV 655
                    ****986 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.3
                     HTTSBSSHHHHHHHHHHHHTTCHHHTC.TTC-HHHHHHHHHHHHHH CS
  CO_deh_flav_C   54 LiGkplseelleeaakaleeelspasd.prasaeYRrslavsllfr 98  
                       G++l+  +++ a+++l e l p ++  +a a  ++   +++l r
     KKY19715.1 1210 SSGSDLNGMAVKSACDQLNERLAPYWErYGADASMKTIAHAAYLDR 1255
                     579999999***************9998998888877666666655 PP

>> Ald_Xan_dh_C  Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.3   6.9e+03       8      25 ..     279     296 ..     278     300 .. 0.87
   2 !   91.8   0.0   1.1e-29   3.3e-26       1     110 []     706     814 ..     706     814 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.3
                   GGCC-TTTEEEEEEE-SS CS
  Ald_Xan_dh_C   8 dDipapgalylafvrStk 25 
                   dDip+ ga+y++ + S +
    KKY19715.1 279 DDIPVSGAEYGKPMKSRE 296
                   8**********9998876 PP

  == domain 2  score: 91.8 bits;  conditional E-value: 1.1e-29
                   TT-SCCGGGCC-TTTE.EEEEEE-SSSSEEEEEEE-HHHHCSTTEEEEEEHHHHCCGTECCTTSSS-EEEESS-SSEESSTT-EEEEEEESSHHHHH CS
  Ald_Xan_dh_C   1 tGeavYvdDipapgal.ylafvrStkahAkivsidvsaalalpGVvavitakdlpkenkaigsiledeedallaedkvrsvgqavaavvAedeetAr 96 
                   tGea Y+dD+p+ +++ y+a+v+S++ahAk+ sid s al++   + +i++  +p e + +gs+ +de+  ++a dkv+s+gq++++v A++ e+A+
    KKY19715.1 706 TGEAEYLDDMPHHERElYGALVMSQRAHAKLASIDWSPALESGLALGYIDHTSIPPEANIWGSVVKDEP--FFAIDKVESHGQPIGLVYADTYEQAQ 800
                   8**************************************************************999997..************************** PP

                   HHHHT-EEEEEE-- CS
  Ald_Xan_dh_C  97 kAaklvkveYeelp 110
                   +Aa++vkv Ye+lp
    KKY19715.1 801 AAARAVKVVYEDLP 814
                   ***********986 PP

>> Fer2_2  [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.1   5.3e-29   1.6e-25       1      75 [.     114     195 ..     114     196 .. 0.89

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 5.3e-29
      Fer2_2   1 TveglgeeleelhpvqeafveegasqCGyCtpGfvmsaaalleene........pkpteeeirealsgnlCRCtgYrpivdAv 75 
                 Tveglg+  e+ hp+qe++++ ++sqCG+CtpG+vms++a+++++          +++e e++ +l+gnlCRCtgY+pi++A+
  KKY19715.1 114 TVEGLGSV-EHPHPLQERLAKFHGSQCGFCTPGIVMSIYAIIRNAFdqetntfhLTEDEIEMKGHLDGNLCRCTGYKPILQAA 195
                 9*****77.569*****************************977668889998755555789999*****************8 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.1e-09   3.2e-06       2      52 ..      35      86 ..      34     104 .. 0.77
   2 ?   -4.3   0.4         6   1.8e+04      37      44 ..     136     143 ..     135     146 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.1e-09
                ETTTEEEEEEEETTTHBHHHHHHH.TTTTTSTTSSSSSSSSTTEEEEEESCE CS
        Fer2  2 tidgkevevevadgettlldaaee.nggidipysCggggCgtClvevlegev 52
                +++g+++++  +++  tlld+ ++  g  +++++Cg+ggCg+C+v +   + 
  KKY19715.1 35 FVNGTKISLFNPNPHWTLLDFIRSqHGLKGTKLGCGEGGCGACTVVLQVPDA 86
                7899999999999999*******978899****************7664332 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 6
                 SSSSSTTE CS
        Fer2  37 gggCgtCl 44 
                 g++Cg C+
  KKY19715.1 136 GSQCGFCT 143
                 456****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.51
# Mc/sec: 8708.31
//
Query:       KKY19716.1  [L=557]
Description: putative acetamidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-89  300.6   0.0    5.9e-89  299.1   0.0    1.6  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.1   0.0   3.3e-93   5.9e-89      16     451 .]     103     544 ..      99     544 .. 0.92

  Alignments for each domain:
  == domain 1  score: 299.1 bits;  conditional E-value: 3.3e-93
                 HH--EEEEEHCCCCHHHHT---TTT.......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE--SGGG-.SSSSTT CS
     Amidase  16 klnalvtvfieealaqAakldkkra.rgkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgkTnmdefam.gssten 112
                 k+n+l ++ ++ea+++A+kld+ ++ +gk kgpLhG+P+++KD++++kg++tt G+  ++ +pa  Da++v+ Lk+ G v++ kTn+++++m +++t+n
  KKY19716.1 103 KTNSLTEISFDEAISEAKKLDAVYQeTGKIKGPLHGIPFTLKDQFNIKGHDTTIGYCGRAFKPAAGDAVIVDILKELGGVVIAKTNLPQSIMqWCETDN 201
                 7899******************9999***************************************************************976489**** PP

                 -TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB-....-SSTTT-EEEEEESSHHHHHHHHHHH CS
     Amidase 113 svfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvv....alessldvvGplarsvedlalllrvi 207
                 ++ g t+NP++++ tpGGS GG++A+ A + ++++ GtD+GGS+RiP  ++gl+ lKP++ r++++gv     ++e+  ++vGp++rs+  l  l +++
  KKY19716.1 202 PLWGLTVNPRNPDFTPGGSTGGEGALQALHSSLAGFGTDIGGSVRIPQTINGLYALKPSSARMPYEGVPvstdGQEHVPSSVGPMTRSLGSLTHLTKAV 300
                 *************************************************************************************************** PP

                 BS--TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHHHHHHHHHHHHHHHTTT-SSS CS
     Amidase 208 lgedpkdstssvipeesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelpsleealslyylilvaeassnlarylgv 306
                 ++  p+ ++ +++p      ++  + ++++l+i+v+k+dgv++++p++ ra+e++++ Le+aGhe+v+++ + ++e+++++ l ++a++ +        
  KKY19716.1 301 IEGKPWTRDPKCVP-IPWREEAFDEVQCRPLVIAVMKDDGVVKAHPPILRALEEVVAVLEAAGHEIVPWNAQGHAECIEIMDLYYTADGCED------- 391
                 *9988888888777.3345567778889**********************************************************999854....... PP

                 SS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCC........BSEEEEESSSSS--BCCCCCHHHC CS
     Amidase 307 ryerlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafee........lDvllsPtaptpaprlgekdktid 397
                           +++ ++    e++ ++v++ +++       e     y++  k+r + ++++   +++        +D+ll+P++p+ a++++  +    
  KKY19716.1 392 ----------IRRDVE-AGGEPYIPHVEALVNRAPAISVYE-----YWQLNKRRNAAQKRYLDKWNSvaslsgkpVDILLTPAMPHVAVPHRGCRW--V 472
                 ..........333333.566777777777777766433333.....9999999999************************************9985..5 PP

                 SHHHHHGCCTTT...HHHHHTT--EEEEECCCCT...................TECEEEEEEESTT-HHHHH CS
     Amidase 398 sytvlynlldftavvvpvnlaglpalsvpagksed..................glPvGvqvigkafqeetlL 451
                  yt ++n+ld+ta+++pv+++ ++ +  + g +e                   g P+ +qv+g++++ee++L
  KKY19716.1 473 GYTKVWNFLDYTAMSFPVSTVSKEIDDPTTGGYEPrgpldkwnndlynldtmaGHPINLQVVGRKLEEEKVL 544
                 7*************************9666666555888889999************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 4294.58
//
Query:       KKY19717.1  [L=628]
Description: putative fad binding domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-82  277.1   0.0    2.6e-82  276.9   0.0    1.1  1  FAD_binding_3   FAD binding domain
    2.7e-27   95.9   0.0    4.8e-27   95.0   0.0    1.4  1  Phe_hydrox_dim  Phenol hydroxylase, C-terminal dimerisation d
    2.2e-08   33.7   0.1    0.00016   21.0   0.1    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
      5e-05   22.2   0.1    0.00016   20.6   0.1    1.8  2  HI0933_like     HI0933-like protein
    0.00012   22.2   0.0    0.00031   20.9   0.0    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00031   20.4   0.2    0.00081   19.1   0.2    1.8  1  DAO             FAD dependent oxidoreductase
     0.0019   18.7   0.3      0.017   15.7   0.1    2.4  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      0.002   17.2   0.1     0.0031   16.6   0.1    1.2  1  Lycopene_cycl   Lycopene cyclase protein
     0.0071   16.2   0.0      0.012   15.5   0.0    1.3  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
  ------ inclusion threshold ------
      0.015   14.4   0.2      0.038   13.1   0.1    1.7  2  FAD_binding_2   FAD binding domain
      0.019   13.9   0.7        1.3    7.8   0.1    2.4  2  Trp_halogenase  Tryptophan halogenase
      0.019   14.2   0.0      0.035   13.4   0.0    1.3  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
      0.026   14.5   0.0      0.052   13.5   0.0    1.5  1  NAD_binding_9   FAD-NAD(P)-binding
      0.027   13.7   0.2        0.1   11.8   0.2    1.9  1  Thi4            Thi4 family
      0.039   13.2   0.0      0.062   12.5   0.0    1.2  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
      0.084   13.0   0.0       0.26   11.5   0.0    1.8  2  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
       0.15   11.3   0.0        1.3    8.3   0.0    2.0  2  ThiF            ThiF family
       0.18   11.1   0.1        2.1    7.7   0.0    2.1  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.9   0.0   2.6e-85   2.6e-82       2     348 ..      30     384 ..      29     385 .. 0.92

  Alignments for each domain:
  == domain 1  score: 276.9 bits;  conditional E-value: 2.6e-85
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE.....CCCC...CEEEEE CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealyne.....lsdt...pkarad 89 
                    ++V++VGaGpaGlmla  L ++G++ ++++ r++++ ++radgl+++++e+++ql l+d++l++g    +  +a++++     l++t    + +a+
     KKY19717.1  30 YQVAVVGAGPAGLMLAANLVRYGIKIRVLDDRENATSTGRADGLQPKSIETFKQLRLADSLLQKG--VRIYDIAFWESkgtepLHRTgrqLHYPAN 123
                    69***************************************************************..55567777777456665555533333444 PP

                    HHCHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEE..ECCTTEEEEEEEEEEEE--GTT-HHHHHHT.GGEEEEEEE CS
  FAD_binding_3  90 lelesspervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevr..dketgeeetvrakYlvGaDGgrStvrktlg.iefegeetv 182
                    l +++  ++v ++ q ++e i +++ + rg++v ++  +++  ++++g   ev+  d   ++ +t+ a++lvG+DG++S+vr++++ i++ege++ 
     KKY19717.1 124 L-VDTLDPYVLLVHQGMVEDIFINDMKDRGVEVTRSSSFVTYSEEGNGKPIEVQcqDLVHNTGKTILADFLVGCDGAHSAVRRAMPdITMEGESDH 218
                    4.59**********************************999999888865555444888899999*******************97477******* PP

                    EEEEEEEEEEEC-SCCCTTCCEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEE.EEEEEEEEEEEEEE CS
  FAD_binding_3 183 yeagvldvlfdadlsdiveplvlilsaesrgvmviPlentlerfyvqvearaekeersekfteeevkarlreivgektldv.eieevsawtvaqrv 277
                      +gvld ++++d++d++++ v+++s+  + + viP+e++ +r y+ ++a+a+++ +++  ++e v +++rei ++ tl+  ++e++  ++++qrv
     KKY19717.1 219 ASWGVLDGVINTDFPDLWSK-VVVTSETAGTILVIPRERNMTRLYIELNAGANQRIEKDVASQEWVMQKAREILAPFTLEWeSVEWFGNYHIGQRV 313
                    ********************.89999999999************************************************9899************ PP

                    ESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 278 aekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvdf 348
                    a+++r+g+vf+ GDA H+h+P+++qG+Nt++ D +nLawkL ++ +G A ++lL tYeeerr++aq++++f
     KKY19717.1 314 ARSFRNGNVFITGDAGHTHSPKAAQGMNTSMHDGFNLAWKLNLAARGLAAPSLLSTYEEERRKIAQDLINF 384
                    *******************************************************************9987 PP

>> Phe_hydrox_dim  Phenol hydroxylase, C-terminal dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.0   4.9e-30   4.8e-27       1     151 [.     409     570 ..     409     580 .. 0.94

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 4.9e-30
  Phe_hydrox_dim   1 FtsGvgveYqpsllvaevkskqnlatglrpGrrlpsakVvrvaDanpvdlqdeipsdGrfRilvfagdlsdaeqksrlsaladalsskesflsrf 95 
                     F+sGvg+eY++++l   + s+ + ++ lr G +lp+a+V+r++Danpv ++ +ip+  +f++++fa d+ +a  k+ l++++d++++ +sfls+ 
      KKY19717.1 409 FISGVGAEYHDNVL---NLSEPSPQGTLRAGALLPPARVTRFIDANPVGIEIDIPLFSQFKLYFFAPDAIKA--KAFLNSVCDKIATASSFLSQA 498
                     9*************...7889999999***************************************996666..89*********9999****** PP

  Phe_hydrox_dim  96 tpada.......................dvdsvievllihaaprkeieledlPevlrpfdeklgldy.ekvyvddesyhe 151
                     t +++                       +v+ +i+++l++++p+++ie++dlP++l+           ++ y+dd s+h+
      KKY19717.1 499 TLRAKksyassplgkssgdafiqadryiSVSPLITFCLVTQTPKSDIEIADLPALLQ--------ASrWTFYLDDISDHK 570
                     998889***************************************************........666********9876 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   1.6e-07   0.00016       1      34 [.      30      63 ..      30      78 .. 0.88
   2 !   10.4   0.0   0.00027      0.27     179     242 ..     134     204 ..     112     237 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.6e-07
                 CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaqagakvtlvelegt 34
                 ++v+v+G+GpAGl +a +l ++g+k+ +++++++
   KKY19717.1 30 YQVAVVGAGPAGLMLAANLVRYGIKIRVLDDREN 63
                 68***************************85554 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00027
                  TTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE....EEE...EEETTSCEEEESEEEE-S-EEES-H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxx...xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 179 raldkelsaaleealekeGvevklgtsvkeidgnge....kle...vvledgeeidadlvvvavGvrpste 242
                    ++ +++++  + ++++Gvev   +s+++  ++g+    +++   +v+++g++i ad +v + G     +
   KKY19717.1 134 LVHQGMVEDIFINDMKDRGVEVTRSSSFVTYSEEGNgkpiEVQcqdLVHNTGKTILADFLVGCDGAHSAVR 204
                  678889999********************99999889999555669*****************99876554 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   1.6e-07   0.00016       2      34 ..      31      63 ..      30      69 .. 0.91
   2 ?   -2.4   0.0       1.4   1.4e+03     113     160 ..     142     189 ..     139     197 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.6e-07
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakk 34
                 +v+v+G+G+AGlm A+++ + g ++ +l+  ++
   KKY19717.1 31 QVAVVGAGPAGLMLAANLVRYGIKIRVLDDREN 63
                 89**************************98765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
                  HHHHHHHHHHT-EEE-S--EEEEECETTE..EEEEE.TTEEEEESEEEE CS
  HI0933_like 113 dallkelkeagvklrletevksvekeedg.kfrvktkseeeleadklvl 160
                  d++++ +k++gv++  +++  + ++e +g  ++v++ ++   ++ k++l
   KKY19717.1 142 DIFINDMKDRGVEVTRSSSFVTYSEEGNGkPIEVQC-QDLVHNTGKTIL 189
                  6889999******99999988886655540355555.444445555555 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.1e-07   0.00031       1      30 [.      34      63 ..      34      79 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.1e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdr 30
                   +vGaG +Gl +A+ L ++g+++ +l+ r+ 
     KKY19717.1 34 VVGAGPAGLMLAANLVRYGIKIRVLDDREN 63
                   8*************************9976 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2   8.1e-07   0.00081       2      80 ..      32     111 ..      31     345 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 8.1e-07
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHH.HHHHHHHHHH.HHHHHHHSSTTS CS
         DAO   2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeasela.rlslealeel.releeelgidid 80 
                 v+++G+G +Gl  A  L r g  + +l+ + + +  ++gr+ gl   +++++++  +la  l + +++ +  ++ e+ g +  
  KKY19717.1  32 VAVVGAGPAGLMLAANLVRYGikIRVLDDR-ENA-TSTGRADGLQPKSIETFKQL-RLAdSLLQKGVRIYdIAFWESKGTEPL 111
                 9*****************************.777.8*******999999888866.666566666677775444455565444 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   1.7e-05     0.017       2      33 ..      32      63 ..      31      72 .. 0.91
   2 ?   -0.2   0.0       1.6   1.6e+03      42      72 ..     140     170 ..     132     179 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.7e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdk 33
                v+vvG+G  gl+lA++l ++g k+ v++ +++
  KKY19717.1 32 VAVVGAGPAGLMLAANLVRYGIKIRVLDDREN 63
                89************************998876 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHTTEEEECSEEEEEEEEETTS CS
   Pyr_redox  42 askilqeklekngievllntkveeiegsedg 72 
                 +++i+ + ++++g+ev  +++ +   ++++g
  KKY19717.1 140 VEDIFINDMKDRGVEVTRSSSFVTYSEEGNG 170
                 67788899********999988888777776 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   3.1e-06    0.0031       2      35 ..      32      63 ..      31      70 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.1e-06
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlieasps 35
                   v+v+GaGpAgl lAa+l   ++g+k+ +++  ++
     KKY19717.1 32 VAVVGAGPAGLMLAANL--VRYGIKIRVLDDREN 63
                   89***************..888888888876665 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.2e-05     0.012       1      40 [.      31      70 ..      31      95 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.2e-05
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekale 40
                +vav+GaG  G  +aa +++ g++++++d +e+a  ++++
  KKY19717.1 31 QVAVVGAGPAGLMLAANLVRYGIKIRVLDDRENATSTGRA 70
                69****************************9999988776 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.9e-05     0.038       2      35 ..      32      65 ..      31      77 .. 0.86
   2 ?   -2.2   0.0       1.6   1.6e+03     322     372 ..     395     445 ..     308     447 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.9e-05
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefg 35
                   v V+G+G AGL+ A+++ + G k+ v++  ++  
     KKY19717.1 32 VAVVGAGPAGLMLAANLVRYGIKIRVLDDRENAT 65
                   89*************************9988843 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.6
                    SHHHHHHHSHHHHHHHHHCCT......S-TTTSEEE........EEEEEEEE CS
  FAD_binding_2 322 daegleatleaineeaangldkdfgrgidpadrpip.gpfyavkvvpaqhyt 372
                    + ++l++++++ n  ++ g++++ +  + +  +p p g++ a  + p+++ t
     KKY19717.1 395 GDAALAKNFDD-NIRFISGVGAEYHDNVLNLSEPSPqGTLRAGALLPPARVT 445
                    56788888888.8888888888888888888888888888888888888776 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0013       1.3       2      34 ..      32      61 ..      31     119 .. 0.79
   2 ?    4.1   0.0     0.017        17     147     212 ..     131     202 ..      79     218 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0013
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlvese 34
                    + +vG+G+aG + Aa l +++   +++ +++  
      KKY19717.1 32 VAVVGAGPAGLMLAANLVRYG---IKIRVLDDR 61
                    89*****************99...777777654 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.017
                     -EEEE-HHHHHHHHHHHHHHCT-EEEE--EEEEEE-T.TS-EEEEEETT.....S-EEE-SEEEE-SGGG-I CS
  Trp_halogenase 147 yAyhldaalyakfLrrvaearGvtrvegkvvevqlde.dgrveslrled.....greveadlfiDcsGfrgl 212
                     y + + ++ ++++  +  ++rGv++++  +  +  +e +g+  +++ +d     g+++ ad+ + c G  + 
      KKY19717.1 131 YVLLVHQGMVEDIFINDMKDRGVEVTRSSSFVTYSEEgNGKPIEVQCQDlvhntGKTILADFLVGCDGAHSA 202
                     555566777788888888999999988877555555558876666666666666**************9886 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.6e-05     0.035      27      77 ..      28      80 ..      12     103 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.6e-05
                 ---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH..TTTCECEE CS
  AlaDh_PNT_C 27 epakvlviGgGvaGlqAiatakglgakVtvlDvrparleqles..lgakfvev 77
                 +  +v v+G+G aGl  +a+ ++ g k++vlD r+++    ++  l+ k +e+
   KKY19717.1 28 NSYQVAVVGAGPAGLMLAANLVRYGIKIRVLDDRENATSTGRAdgLQPKSIET 80
                 5668*****************************99988766655677777776 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.2e-05     0.052       1      35 [.      33      62 ..      33      77 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.2e-05
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpse 35
                   a+vGaGp+Gl+++++L++       ++i + d++e
     KKY19717.1 33 AVVGAGPAGLMLAANLVRY-----GIKIRVLDDRE 62
                   89***************99.....58888888844 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2    0.0001       0.1      19      50 ..      31      61 ..      25     190 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0001
                EEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 19 DvvivGaGssGLtaayylakkpdlkvailers 50
                 v++vGaG++GL  a  l +  ++k+ +l+ +
  KKY19717.1 31 QVAVVGAGPAGLMLAANLVRY-GIKIRVLDDR 61
                699*****************9.******9754 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.3e-05     0.062       2      32 ..      34      63 ..      30      85 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.3e-05
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilEkgni 32
                 ++GaGPaGl  a +l + g+ ++ +l+  + 
   KKY19717.1 34 VVGAGPAGLMLAANLVRYGI-KIRVLDDREN 63
                 89******************.6999987644 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00026      0.26       1      45 [.      31      75 ..      31      94 .. 0.84
   2 ?   -2.4   0.0       4.7   4.6e+03      14      67 ..      86     139 ..      84     150 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00026
                   EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE CS
  NAD_binding_2  1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegaka 45
                   +++++G G  G  +a nl++ g+k+ v + +++++ +  a+g+++
     KKY19717.1 31 QVAVVGAGPAGLMLAANLVRYGIKIRVLDDRENATSTGRADGLQP 75
                   589**************************9999988877777544 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.7
                    HHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHH CS
  NAD_binding_2  14 malnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagk 67 
                    +a  ll++g +++ +   ++k +e +++  + ++ +++lv++ld  +++v++g 
     KKY19717.1  86 LADSLLQKGVRIYDIAFWESKGTEPLHRTGRQLHYPANLVDTLDPYVLLVHQGM 139
                    677888888888888877777777777778888999999999999999888875 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0013       1.3      19      49 ..      30      59 ..      23      92 .. 0.82
   2 ?    0.4   0.0      0.35   3.5e+02     106     135 ..     461     490 ..     443     546 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0013
                SEEEEE--SHHHHHHHHHHHHHTTTEEEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 19 skvllvGaGglGsellknLalsGvgkltlvD 49
                 +v++vGaG  G  l+ nL++ G++ +++ D
  KKY19717.1 30 YQVAVVGAGPAGLMLAANLVRYGIK-IRVLD 59
                689********************96.66666 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.35
                 HHTT-SEEEEESSSHHHHHHHHHHHHHHT- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 106 llesvDlVvdalDniearrlvnracvkkgi 135
                 l++++ l + a D i+a+  +n++c k ++
  KKY19717.1 461 LFSQFKLYFFAPDAIKAKAFLNSVCDKIAT 490
                 7899999999***************97663 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0021       2.1      31      87 ..      24      80 ..       8      89 .. 0.86
   2 ?    0.8   0.0      0.28   2.8e+02      13      59 ..     272     321 ..     264     345 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0021
                  BS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHH CS
  2-Hacid_dh_C 31 gkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvslee 87
                  g+  +  +v+++G+G  G  +a  l   g+k+ + d +++++++ ++ g++  s+e+
    KKY19717.1 24 GTAANSYQVAVVGAGPAGLMLAANLVRYGIKIRVLDDRENATSTGRADGLQPKSIET 80
                  55667789******************************9988877777777666665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.28
                   HHHHHHHTTCC...HTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT CS
  2-Hacid_dh_C  13 eadeevregew...ksekallgkelsgktvGiiGlGrIGqavakrlkafg 59 
                   +++++v ++ew   k+++ l   +l+ + v  +G  +IGq+va+ ++  +
    KKY19717.1 272 RIEKDVASQEWvmqKAREILAPFTLEWESVEWFGNYHIGQRVARSFRNGN 321
                   667888888997755555566669999999999999*******9988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.53
# Mc/sec: 3576.81
//
Query:       KKY19718.1  [L=276]
Description: putative lung carbonyl [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-58  196.7   0.1    5.2e-58  196.4   0.1    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    5.2e-44  150.0   0.1    6.7e-44  149.7   0.1    1.1  1  adh_short     short chain dehydrogenase
    5.9e-10   39.4   0.0    9.7e-10   38.6   0.0    1.4  1  KR            KR domain
  ------ inclusion threshold ------
       0.11   12.6   0.1       0.36   10.9   0.0    1.8  2  TFIIB         Transcription factor TFIIB repeat


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.4   0.1   1.2e-61   5.2e-58       1     232 [.      38     272 ..      38     273 .. 0.96

  Alignments for each domain:
  == domain 1  score: 196.4 bits;  conditional E-value: 1.2e-61
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.E.EE--TTSHHHHHHHHHHHHHHH.SSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.v.lecDVtdeeqvealveevvekf.gklDilvnnagiapklkgpfletsree 94 
                   G a+g G a A+ la+ Ga+v++ d+ + +  + +e+a+++g + + +++DV ++e++++ +e+ ++++ + lDi+v +agi ++   +fl+ + ee
    KKY19718.1  38 GGARGCGLAFAEGLADSGANVIIFDIIDPS-PAFNEIASKYGVKtAyYKVDVGSQESLKQGFETFQKDWdNALDICVPCAGINRH--YEFLDYPFEE 131
                   6689*************************9.89*********88546**********************999*************..********** PP

                   HHHHHHHHTHHHHHHHHHHHH.HCTSC...CEEEEEEEGGGTSBSTTTT..HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTH CS
  adh_short_C2  95 fdraldvnlyslfllakaalp.lmkeg...gsivnlssvgaervvpnyn..aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgf 185
                    ++ l+vn+ ++f +a+ a++ ++++g   gsiv ++s+++  +vp +   ay+ +K+a+ +++  +A+el+++giR+N+vspg+++T++++++   
    KKY19718.1 132 AEKLLQVNVLGAFFTAQLAAKqMIANGtqkGSIVMVASIASYGAVPTQLasAYCGSKGAVRSMVSPIARELAKHGIRINSVSPGYVETEMTAAFG-- 226
                   *********************777777899**************9998778***************************************98876.. PP

                   HHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 186 delleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                    +l+e+++a+++ grl++p+++  a++fLasd++syitGq++ vDgG
    KKY19718.1 227 -HLKEAWKAETMNGRLAQPDDIMGACVFLASDASSYITGQDILVDGG 272
                   .99*******************************************9 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   0.1   1.5e-47   6.7e-44       2     189 ..      33     224 ..      32     229 .. 0.95

  Alignments for each domain:
  == domain 1  score: 149.7 bits;  conditional E-value: 1.5e-47
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHH.SSESEEEE---SS--SSGGGCSH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkkl.gkldvLvnNAGitgsgpfselse 98 
                 ++lvtG+++G G+a+a+ la +Ga+v+++d+ +     + +e+ ++ g k  +++vDv ++e++++ +e+ +k++   ld+ v +AGi++  +f ++  
  KKY19718.1  33 TALVTGGARGCGLAFAEGLADSGANVIIFDIIDPSP--AFNEIASKyGVKTAYYKVDVGSQESLKQGFETFQKDWdNALDICVPCAGINRHYEFLDYPF 129
                 89****************************997766..899999999****************************999********************* PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHH..HCTTEEEEEEEEGGG..TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short  99 eewervievNltgvflltravlpaml..kqssGrIvnvsSvag..kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 ee e++++vN+ g+f ++++++++m+    ++G+Iv v+S+a+   vp    +aY+ sK+av+++++ +a+ela++gir+n+v PG+v+T+m+++
  KKY19718.1 130 EEAEKLLQVNVLGAFFTAQLAAKQMIanGTQKGSIVMVASIASygAVPTQLASAYCGSKGAVRSMVSPIARELAKHGIRINSVSPGYVETEMTAA 224
                 **************************9999**********996448999999****************************************986 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   2.2e-13   9.7e-10       2     147 ..      33     180 ..      32     214 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 2.2e-13
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHH.HHTT-EEEE----TT-HHHHHHHHHHHHHHS.S---EEEE---------TT CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliael.ealgaevevvaaDvsdkdavealleeikaee.ppikGvihaAgvlrdklle 98 
                 t l+tGG+ g Gl++a+ la++ga+ +++   +  ++++    ++e+ +++g++  ++++Dv +++++++ +e+++++  +++  ++ +Ag+ r   + 
  KKY19718.1  33 TALVTGGARGCGLAFAEGLADSGANVIIFDIID--PSPA----FNEIaSKYGVKTAYYKVDVGSQESLKQGFETFQKDWdNALDICVPCAGINRHYEFL 125
                 579**********************99987666..2333....44440566*************************9999******************* PP

                 T--HHHHHHHHTTTTHHHHHHHHHTTT......S--SEEEEEEEHHHHH--TT-H CS
          KR  99 emtaedleqvlapKvkGawnLhelled......esldffvlfSSiagllgsagqa 147
                 +   e+ e++l+  v Ga    +l ++      ++   +v+++Sia+    ++q 
  KKY19718.1 126 DYPFEEAEKLLQVNVLGAFFTAQLAAKqmiangTQKGSIVMVASIASYGAVPTQL 180
                 *****************9988888777666667888899******9987777775 PP

>> TFIIB  Transcription factor TFIIB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.2   5.3e+03      18      33 ..     147     162 ..     143     169 .. 0.60
   2 ?   10.9   0.0     8e-05      0.36      17      49 ..     223     257 ..     218     266 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.2
                 HHHHHHHHTTSTTTTS CS
       TFIIB  18 AkelaklaleekvlkG 33 
                 A+ +ak++ ++++ kG
  KKY19718.1 147 AQLAAKQMIANGTQKG 162
                 4445555555555554 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 8e-05
                 HHHHHHHHHTTSTTTTSG..CTTHHHTTHHHHHHT CS
       TFIIB  17 aAkelaklaleekvlkGr..spagiaAAclyiAcr 49 
                 aA+  +k+a + ++++Gr  +p+ i++Ac+++A+ 
  KKY19718.1 223 AAFGHLKEAWKAETMNGRlaQPDDIMGACVFLASD 257
                 78888999**********77799**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1971.58
//
Query:       KKY19719.1  [L=312]
Description: putative arp2 3 complex subunit arc16 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-15   57.3   0.0    2.6e-15   56.4   0.0    1.4  1  Polysacc_deac_1  Polysaccharide deacetylase
    5.8e-05   22.8   0.0    0.00012   21.8   0.0    1.6  1  DUF2334          Uncharacterized protein conserved in bacteri


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0   2.9e-19   2.6e-15      21     123 ..      44     147 ..      30     148 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 2.9e-19
                      HHHHHHHHHHCT--EEEEE-HHHHCH-HHHHHHHHHTTEEEEE--SS--EGGGSHHHHHHHHHHHHHHHHHHHHS-.---EEE-GGGEE-HHHH CS
  Polysacc_deac_1  21 tteilpvLkkykvkatffvigglvedypdevremaasGveignHtinhsnlkrlseeevrreierakdalrkalgr.eprlfryPygsasatvl 113
                      ++++l++++ky++ka +f+ g++ e+ p+   ++ ++G+eig H+++h+n  +++ e++r+ ++++ + l + +g  +pr   +P  + s+++ 
       KKY19719.1  44 VERLLKLFDKYNIKASWFIPGHTLETFPEDCAKVRDAGHEIGLHGYTHENPVDMTLEQQRDVLDKCYRLLTDFCGGkPPRGTVAPWWEVSREST 137
                      789**********************************************************************87769**************** PP

                      HHHHHTT.EE CS
  Polysacc_deac_1 114 evarelgfay 123
                      + + e+g++y
       KKY19719.1 138 DLLLEYGIEY 147
                      ****999988 PP

>> DUF2334  Uncharacterized protein conserved in bacteria (DUF2334)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.4e-08   0.00012      63     141 ..      76     146 ..      43     215 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.4e-08
     DUF2334  63 ylqakGgeialHGYtHqygtvksevsgegfeflseseakeriekGieilkk.lg.ikpkgFeaPhyaaseetykalkky.fs 141
                 ++++ G+ei+lHGYtH+      +        ++ +++++ + k  ++l++ +g  +p+g +aP +++s+e++  l +y ++
  KKY19719.1  76 KVRDAGHEIGLHGYTHENP---VD--------MTLEQQRDVLDKCYRLLTDfCGgKPPRGTVAPWWEVSRESTDLLLEYgIE 146
                 45799*************8...33........46799*************943425*****************999976554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2131.65
//
Query:       KKY19720.1  [L=447]
Description: putative fad dependent oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-18   65.8   0.0    1.4e-17   63.9   0.0    1.7  1  FAD_binding_3   FAD binding domain
    1.5e-05   25.1   2.4    0.00016   21.8   1.1    2.6  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
      2e-05   24.4   6.6     0.0071   16.0   0.0    2.2  2  DAO             FAD dependent oxidoreductase
    0.00013   20.8   2.6    0.00082   18.2   2.6    1.9  1  HI0933_like     HI0933-like protein
    0.00014   20.9   3.3      0.032   13.1   1.0    2.1  2  Trp_halogenase  Tryptophan halogenase
    0.00064   19.0   3.8      0.063   12.5   1.0    2.1  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0037   16.4   0.6     0.0074   15.4   0.6    1.4  1  Lycopene_cycl   Lycopene cyclase protein
     0.0042   16.2   0.0       0.15   11.1   0.0    2.1  2  SE              Squalene epoxidase
     0.0065   15.9   0.3     0.0094   15.3   0.3    1.3  1  FAD_oxidored    FAD dependent oxidoreductase
  ------ inclusion threshold ------
       0.01   15.0   6.4      0.022   13.9   5.5    1.8  2  FAD_binding_2   FAD binding domain
      0.054   12.7   0.9        0.1   11.8   0.8    1.5  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
        0.2   11.5   0.8       0.33   10.8   0.8    1.3  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
       0.47    9.7   2.8       0.96    8.7   0.1    2.1  2  Amino_oxidase   Flavin containing amine oxidoreductase
       0.48    9.5   5.2        1.7    7.6   4.9    1.8  2  GIDA            Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   1.1e-20   1.4e-17       2     348 ..      19     378 ..      18     379 .. 0.85

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 1.1e-20
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE..CCCCCEEEEEHHCHHC CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealyne..lsdtpkaradleless 95 
                     +++IVGaG+ Gl +a     aG +v ++e  ++  + + +  + + + ++l + Gl++ +++ +++ + ++ + ++   +s ++ ++a  e +  
     KKY19720.1  19 LKIIIVGAGLGGLGAAIACLLAGHDVDVLESATQIGEVGAGIQILPNSCRVLTHWGLKEALEQYATRPKQVNMLGWKGniISSMNFHEAAAE-QYP 113
                    5789***************************999999999999**********************998888888887755555566666666.999 PP

                    ST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHH.HHTGG.EEEEEEEEEEEEE. CS
  FAD_binding_3  96 pervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrk.tlgie.fegeetvyeagvl. 188
                    +++  ++   +l   L+++ +e g +v+ + +ve ++ ++ g ta++  k+  e+   +a+ +vGaDG  St+r+  +g +  +++ ++   ++l 
     KKY19720.1 114 GTSFWDFHRANLHMCLYNRTVELGGKVYVNSRVEDVRINDGGSTATAVLKNGTEH---TADLIVGADGIFSTMREiMVGHPdPPTPTGDLAYRLLl 206
                    9**********************************************99975555...8***************9446766655555554444332 PP

                    ...EEEEEC-SCCCTTC...CEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEE..EEEEEEEEEEEEE CS
  FAD_binding_3 189 ...dvlfdadlsdivep...lvlilsaesrgvmviPlentlerfyvqvearaekeersekfteeevkarlreivgektldv..eieevsawtvaqr 276
                       ++l d +l+++v +   +++++ ++  +  v+   + l +++++v+ + +++ ++   + +e+ a  +   ++   +     e+v++w++  r
     KKY19720.1 207 stkEMLKDPELASFVTDpqvNYWMGPDKHAVNYVLRGGE-LFNMVLLVPDDMPDGVTNITADVNEMCALFQDGWDPRIPKLlkLCESVQKWKLCIR 301
                    222455555888888889*99999999999877766666.88899999999999999999999999999999998876665537899*****9988 PP

                    E.ESSSEE..TTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTS..S-GGGGHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 277 v.aekyrk..grvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGe..AkeelLdtYeeerravaqavvdf 348
                    + ++++++  g v + GDA+H++ P  + G  ++++Da  L+  L      +   k++ L  Yee r+++ + vv++
     KKY19720.1 302 LgMDQWSHpsGAVTMLGDAVHATLPYLASGAGMSLEDAAVLGECLSRITDKSpaSKQNALSVYEECRAPRTKMVVQR 378
                    74678875338**********************************99986432267889*************99986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   1.1   1.3e-07   0.00016       1      32 [.      23      54 ..      23      73 .. 0.89
   2 ?    1.7   0.0      0.25   3.2e+02      17      54 ..     122     160 ..     101     173 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.3e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlG 32
                   IvGaGl+Gl aA ++  ag+dv++le+++++G
     KKY19720.1 23 IVGAGLGGLGAAIACLLAGHDVDVLESATQIG 54
                   9******************************9 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.25
                    CCTEEEEEE-SSSSSSGGG-EECE.TTCEECTS---EEE CS
  NAD_binding_8  17 kagfdvlllekrdrlGGraasyev.pgvrvdygahifhg 54 
                    +a+++  l+ +   lGG+++ +++ ++vr++ g ++ + 
     KKY19720.1 122 RANLHMCLYNRTVELGGKVYVNSRvEDVRINDGGSTATA 160
                    567788888888999999998866588888888877655 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   6.9    0.0052       6.6       1      34 [.      20      55 ..      20      60 .. 0.90
   2 !   16.0   0.0   5.5e-06    0.0071     141     288 ..     118     271 ..      76     337 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0052
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiags 34
                +++i+G+G  Gl++A +   +g  V +le++ ++g+
  KKY19720.1 20 KIIIVGAGLGGLGAAIACLLAGhdVDVLESATQIGE 55
                59****************999999******998885 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 5.5e-06
                 EEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE.EECTEEEEEEEEEEE--GGGHH..HHHTTCTTTSEEEEEEEEEEEEEECCTHSTG CS
         DAO 141 gqvdpakltaalaraaealGveilegtevtgleeedgkvwgve.rttpgendaadavVnaaGawsd..llgllkeldlpispvrgqvlvlkplseklvs 236
                 + ++ a l   l+++  +lG++++ +++v++++ +dg+ ++   + ++g++++ad +V a G++s+  ++ +++  d+p +p+    ++l  ls k+  
  KKY19720.1 118 WDFHRANLHMCLYNRTVELGGKVYVNSRVEDVRINDGG-STATaVLKNGTEHTADLIVGADGIFSTmrEI-MVGHPDPP-TPTGDLAYRL-LLSTKEML 212
                 56788889999*********************887733.333334555888778**********976544.33334566.6766666666.22332222 PP

                 SGCSEEEEEEEETTTTEEEEEETTS..EEEEEESSE......EETTCSSTSCSHHHHHHH CS
         DAO 237 paailpvpetdddgrgvyvtprkdg..rvlvGgtad......eesgdddpevdeedidel 288
                 +++ l+ +  +d+   + + p+k     vl Gg+        +++ +d ++   +d++e+
  KKY19720.1 213 KDPELASF-VTDPQVNYWMGPDKHAvnYVLRGGELFnmvllvPDDMPDGVTNITADVNEM 271
                 22334433.666667777777643311233344433666666555555544444444444 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   2.6   6.4e-07   0.00082       2     163 ..      20     178 ..      19     184 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 6.4e-07
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H...HHHHCGGGT-EEEETT-SGGGEEES...STTTTHHHHHHS-HHHHHHHHHHTT--EEE- CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgr...KilisGgGrcNvTnlseepeellsrypenpkflksalsrftnedlialveelgvelkee 96 
                  ++i++G+G  Gl aAi++  +g++V +le+a+++g+    i+i  +    +T+    ++e l++y+++pk+++       + ++i+ ++ ++ +  e+
   KKY19720.1  20 KIIIVGAGLGGLGAAIACLLAGHDVDVLESATQIGEvgaGIQILPNSCRVLTH--WGLKEALEQYATRPKQVNMLG---WKGNIISSMNFHEAAA-EQ 111
                  79*****************************9987611156666555445666..788888999999999887543...2467888777777665.55 PP

                  STTEEEETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE..TTEEEEESEEEE--- CS
  HI0933_like  97 dsgrlFpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvkt.kseeeleadklvlAtG 163
                    g  F +  + +++  +l ++  e g k++++++v++v+ +++g+   ++ k+++e +ad +v A G
   KKY19720.1 112 YPGTSFWDF-HRANLHMCLYNRTVELGGKVYVNSRVEDVRINDGGSTATAVlKNGTEHTADLIVGADG 178
                  667777777.5667999999999999999999999999999999998888888999999888887776 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   1.0   2.5e-05     0.032       1      69 [.      20      84 ..      20      97 .. 0.86
   2 !    8.6   0.0   0.00056      0.71     117     211 ..      87     181 ..      79     190 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.5e-05
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S.SS---SS-EE--THHHHTHHHHT--HHHHCHHCT- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlvese.eigtvgvGeatipsirkllrlLgideeeflretea 69
                    ki+ivG+G  G  aA+a+  a+   ++v ++es+ +ig vg G   +p+   +l   g++e+  l++   
      KKY19720.1 20 KIIIVGAGLGGLGAAIACLLAG---HDVDVLESAtQIGEVGAGIQILPNSCRVLTHWGLKEA--LEQYAT 84
                    79***************99999...99*****9747*************9999999999998..655555 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00056
                     S-HHHHH-SCHHHHHTTB-SB-TTS-B-S--EEEE-HHHHHHHHHHHHHHC.T-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SGGG CS
  Trp_halogenase 117 eeledysleavaakakkfsprekdglsalsyAyhldaalyakfLrrvaear.GvtrvegkvvevqldedgrveslrledgreveadlfiDcsGfr 210
                     ++++   ++   + + +f +++ ++  ++s+ + + +a++   L +   +  G   v+ +v++v++++ g+ +   l++g+e  adl++ + G  
      KKY19720.1  87 KQVNMLGWKGNIISSMNFHEAAAEQYPGTSF-WDFHRANLHMCLYNRTVELgGKVYVNSRVEDVRINDGGSTATAVLKNGTEHTADLIVGADGIF 180
                     5556666666666667776666665666666.89999999998876666663777899*******************************999976 PP

                     - CS
  Trp_halogenase 211 g 211
                     +
      KKY19720.1 181 S 181
                     6 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   1.0   4.9e-05     0.063       2      31 ..      20      53 ..      19     118 .. 0.72
   2 !    7.3   0.1     0.002       2.5     183     237 ..     123     179 ..     112     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.9e-05
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEE....T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlve....l 31
                 +++++G+G +Gl aa+    ag++v ++e     
   KKY19720.1 20 KIIIVGAGLGGLGAAIACLLAGHDVDVLEsatqI 53
                 799**********************999754441 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.002
                  HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE..EEEEEETTSCEEEESEEEE-S-E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 183 kelsaaleealekeGvevklgtsvkeidgnge..klevvledgeeidadlvvvavGv 237
                   +l ++l ++  + G +v+++++v++++ n+    ++ vl++g+e  adl+v a G+
   KKY19720.1 123 ANLHMCLYNRTVELGGKVYVNSRVEDVRINDGgsTATAVLKNGTEHTADLIVGADGI 179
                  56677777788888999**********9999975666***************98885 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.6   5.8e-06    0.0074       2     148 ..      21     186 ..      20     195 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.8e-06
  Lycopene_cycl   2 vvviGaGpAglslAarl......te.akpglkvvlieaspsllfpnny.vWsdef..edlga....leecvehsWsgtivylddgkkillg....r 79 
                    ++++GaG+ gl  A         ++  + + +++ + a+ ++  pn   v   ++  e+l++     +++    W+g i+   ++++   +     
     KKY19720.1  21 IIIVGAGLGGLGAAIACllaghdVDvLESATQIGEVGAGIQI-LPNSCrVLTHWGlkEALEQyatrPKQVNMLGWKGNIISSMNFHEAAAEqypgT 115
                    688888888764443331122112213445566667666666.44443466666422445543332334445569999887665555444434448 PP

  Lycopene_cycl  80 aYgrvsskrlkeellerlv.engvklleakvesveeeea.geslvvleggrkirarlvvdarglaslkkar 148
                     +   ++++l+  l +r v  +g  +++++ve v+ ++  +  ++vl++g +  a l+v a g++s  ++ 
     KKY19720.1 116 SFWDFHRANLHMCLYNRTVeLGGKVYVNSRVEDVRINDGgSTATAVLKNGTEHTADLIVGADGIFSTMREI 186
                    89999**************668899**********999978899*******************99987654 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.035        44       2      20 ..     170     188 ..     169     198 .. 0.86
   2 !   11.1   0.0   0.00012      0.15     122     173 ..     304     355 ..     261     402 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.035
          SE   2 AkltvvcDGifsklRkels 20 
                 A l v +DGifs +R  ++
  KKY19720.1 170 ADLIVGADGIFSTMREIMV 188
                 8999***********8765 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00012
          SE 122 lpasknekkGlillGDalnmRHPltggGmtvalnDivllskllkpledlsde 173
                 ++  ++ +  + +lGDa+    P  ++G  + l+D+++l + l+ ++d s +
  KKY19720.1 304 MDQWSHPSGAVTMLGDAVHATLPYLASGAGMSLEDAAVLGECLSRITDKSPA 355
                 555555666788*******************************999765443 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.3   7.3e-06    0.0094       2      35 ..      21      54 ..      20     177 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.3e-06
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlG 35
                  +++vG+g++G+ AAia+  aG  v ++e    +G
    KKY19720.1 21 IIIVGAGLGGLGAAIACLLAGHDVDVLESATQIG 54
                  89**************************999998 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   5.5   1.7e-05     0.022       2      33 ..      21      52 ..      20      58 .. 0.92
   2 ?   -1.2   0.0      0.64   8.1e+02     146     200 ..     128     178 ..     119     198 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-05
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   +i++G+Gl+GL AA+++  aG++v v+e + +
     KKY19720.1 21 IIIVGAGLGGLGAAIACLLAGHDVDVLESATQ 52
                   79************************998776 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.64
                    HHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE--- CS
  FAD_binding_2 146 rlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatg 200
                     l+++  ++g +++ + +++++ ++dg+ t   v   ++g+e++  a+ +v a g
     KKY19720.1 128 CLYNRTVELGGKVYVNSRVEDVRINDGGSTATAVL--KNGTEHT--ADLIVGADG 178
                    68888999999999999999999999977777666..6777775..555555555 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.8   8.1e-05       0.1       1      34 [.      22      55 ..      22      84 .. 0.87
   2 ?   -2.8   0.0       2.3     3e+03      95     135 ..     139     180 ..      86     187 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.1e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg.nign 34
                 iI+GaG  Gl+aai++  ag  d+ +lE + +ig+
   KKY19720.1 22 IIVGAGLGGLGAAIACLLAGH-DVDVLESAtQIGE 55
                 8*******************9.89****9766654 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.3
  Pyr_redox_3  95 elpiklfeeVesvkkedeg...fevetsketyeAkkviiAtGef 135
                  ++    +++Ve+v  +d+g     v  +  + +A+ ++ A G f
   KKY19720.1 139 KV--YVNSRVEDVRINDGGstaTAVLKNGTEHTADLIVGADGIF 180
                  33..2333444444333321113333344455555555555555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.8   0.00026      0.33       1      34 [.      20      53 ..      20      69 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00026
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseea 34
                k+ ++GaG+ G g a +++ ag++V +++ ++++
  KKY19720.1 20 KIIIVGAGLGGLGAAIACLLAGHDVDVLESATQI 53
                5789***********************9987765 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.6      0.18   2.4e+02       2      27 ..      29      54 ..      28      54 .. 0.90
   2 ?    8.7   0.1   0.00075      0.96     219     257 ..     134     174 ..     123     176 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.18
                   HHHHHHHHHHHTTEEEEEEESSSSSB CS
  Amino_oxidase  2 aGLaaArqLlsaGfdVtvlEardrvG 27
                    GL aA   l aG+dV vlE+  ++G
     KKY19720.1 29 GGLGAAIACLLAGHDVDVLESATQIG 54
                   69999999999*********988887 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00075
                    TTTTEEEETSEEEEEEEE..ETTCEEEEETTSTEEEESEEE CS
  Amino_oxidase 219 elrgldirlntrVkeikr..egdgvtvtledgevveaDaVv 257
                     ++g+++ +n+rV +++   +g++ t  l++g++ +aD +v
     KKY19720.1 134 VELGGKVYVNSRVEDVRIndGGSTATAVLKNGTEHTADLIV 174
                    469***************7666669999**********988 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.9    0.0014       1.7       1      37 [.      20      55 ..      20      60 .. 0.84
   2 ?   -0.6   0.0      0.41   5.3e+02     115     173 ..     143     202 ..     139     222 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0014
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT- CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLithkldtiae 37
                ++i++G+G+ G+ AA+a+  +G++v  + ++  +i+e
  KKY19720.1 20 KIIIVGAGLGGLGAAIACLLAGHDVDVL-ESATQIGE 55
                69***********************998.44445554 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.41
                 ES-EEEEEECT.TEEEEEEETTS-EEEECEEEE--TT-BT-EEEETTEEEESSCTTC--B CS
        GIDA 115 eeeveelivee.kkvkgvvtedgetikakavviatGtflkgkihigekelsaGrlgelts 173
                 + +ve++ +++ ++++  v+++g++ +a+ +v a G f++ + ++  +  +  ++g+l+ 
  KKY19720.1 143 NSRVEDVRINDgGSTATAVLKNGTEHTADLIVGADGIFSTMREIMVGHPDPPTPTGDLAY 202
                 567889988777788889*******************99876555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 2839.47
//
Query:       KKY19721.1  [L=642]
Description: putative ferric-chelate reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-19   69.2   0.0    3.4e-12   46.8   0.0    2.3  2  NAD_binding_6  Ferric reductase NAD binding domain
    5.7e-19   68.5  12.3      1e-18   67.6  11.3    1.9  2  Ferric_reduct  Ferric reductase like transmembrane component
    2.4e-12   46.9   0.0    2.5e-08   33.9   0.0    2.4  2  FAD_binding_8  FAD-binding domain
  ------ inclusion threshold ------
        0.5   11.1   3.4        2.1    9.1   3.4    2.0  1  PrgI           PrgI family protein


Domain annotation for each model (and alignments):
>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   7.6e-16   3.4e-12       2      87 ..     493     579 ..     492     582 .. 0.93
   2 !   22.8   0.0   1.7e-08   7.8e-05     105     156 .]     575     625 ..     571     625 .. 0.93

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 7.6e-16
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   2 envllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeekse.gnieihiYlTseyeaedasdql 87 
                     +v+l agG+Git  ++ ++dl+   ++e++ t+k+ l+w++ + ++lew++  + ++ +++++   + i+ ++T+ ++a+++ + +
     KKY19721.1 493 GTVMLFAGGVGITHQVPYVRDLVMGFANETVATRKVVLVWIIQSPEHLEWIRPWMTKILNMDRRrDILTIKLFITRPRSAKEVHSPS 579
                    68*****************************************************99*99999978889*********999987755 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 1.7e-08
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 105 avsgtrnvkihfgRPnlkevlkdiaskhknssvgvfvCGppklvkevkklva 156
                    ++s+++ v++  gRPn+++++ ++  +++ +  gv vCG   l ++v+++++
     KKY19721.1 575 VHSPSATVQMFPGRPNVDTLIGKE-CEAQIGAMGVSVCGTGELQDDVRRACN 625
                    68999999***************9.8999999*****************996 PP

>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6  11.3   2.3e-22     1e-18       1     122 [.     182     316 ..     182     319 .. 0.90
   2 ?   -3.0   0.0       1.7   7.5e+03      75     102 ..     485     512 ..     476     515 .. 0.83

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 2.3e-22
  Ferric_reduct   1 lGiaalillplalllalRnnflepltglsldklllfHkwlgvlafllallHvilyllnflrfsal.............deerlldsllk.kpynll 82 
                    +G++++++l  ++++a+R n+l ++ ++s+d+++++H+++g+l++l al+H++++++  + +s+              ++++++ + ++ + +++ 
     KKY19721.1 182 TGTLSTVNLIPLVIMAGRHNPLIKWMNISFDSFNMMHRLFGRLCALEALAHTLCWMISSVEKSKIltllrrfstdeftEGWSHVTMAFReSQFIYA 277
                    699*********************************************************99988*******99998855555555555045666* PP

  Ferric_reduct  83 GvlalllliilaitSlkfirrrlsyelFyylHhllyvayl 122
                    G++a++l++++++++++++r + +ye+F+ lH++++v+ +
     KKY19721.1 278 GLIATVLFLAICLFAFSPVR-HAFYETFLHLHIAMVVVSF 316
                    ********************.*************999865 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.7
  Ferric_reduct  75 lkkpynllGvlalllliilaitSlkfir 102
                    +++p   +G+++l++ ++ ++  ++++r
     KKY19721.1 485 VHRPLDSYGTVMLFAGGVGITHQVPYVR 512
                    5677788999999999999999999988 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   5.7e-12   2.5e-08       5      63 ..     360     415 ..     357     429 .. 0.86
   2 !   10.6   0.0    0.0001      0.45      64     107 ..     444     485 ..     430     487 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 5.7e-12
  FAD_binding_8   5 skakvalleedliklkvskpkkslkykaGqyvyinipslsklfwqsHPFtiasapeddk 63 
                    +ka v+ +++d ++++++ +  ++ +k+Gq+ y+ ips+   +w sHPF++a +  +d 
     KKY19721.1 360 TKALVEAMPGDAMRITFRMAR-PWTFKPGQHFYVIIPSIG--LWTSHPFSVAWSDDEDL 415
                    567789999*******98887.5*****************..7********98766655 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0001
  FAD_binding_8  64 lslvikvksgltkklakkllssskkelenkkaklkvlidGPYGa 107
                     s +++ + g+t  l kk+ ++    ++    +l+ +++GPYG+
     KKY19721.1 444 FSAIVRRRTGFTDALWKKVEKA--GAFDGTSLTLTAFVNGPYGV 485
                    57799****************9..99999999***********7 PP

>> PrgI  PrgI family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.4   0.00046       2.1      21      79 ..     273     336 ..     263     346 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00046
        PrgI  21 Qliflvlallv.....aiglylllrafleelasvlvillavPvaalgfykkdglplekylkaii 79 
                 Q+i+ +l++ v     ++ ++  +r+++ e+ + l i+++v  +a+ +++ dg++++ yl+ +i
  KKY19721.1 273 QFIYAGLIATVlflaiCLFAFSPVRHAFYETFLHLHIAMVVVSFAFLWIHLDGMSAQNYLLGAI 336
                 66666666664222112233333344446777777777777788888************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.50
# Mc/sec: 3854.34
//
Query:       KKY19722.1  [L=404]
Description: hypothetical protein UCRPC4_g04423 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.19   11.1   0.0       0.28   10.6   0.0    1.2  1  GATase1_like  Putative glutamine amidotransferase


Domain annotation for each model (and alignments):
>> GATase1_like  Putative glutamine amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   1.5e-05      0.28      99     151 ..     251     305 ..     226     326 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 1.5e-05
  GATase1_like  99 llkdyvaeGggllmvGGylsfqGidgkaryk.ktpvedvlPvtc.ldvddrvevP 151
                   l+++ v  G +++m+GGy   + i++k + + + ++++++ +t  l+  dr+e  
    KKY19722.1 251 LIAAGVGVGITVVMLGGYKVIKKIKAKEELQkEGSMDEMMEITSdLPNIDRIENW 305
                   678889999******************9986157899****99669*****9964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1480  (0.0825478); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.52
# Mc/sec: 2329.65
//
Query:       KKY19723.1  [L=164]
Description: putative mitochondrial inner membrane translocase subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-32  109.7   8.3    1.2e-31  109.3   8.3    1.1  1  Tim17     Tim17/Tim22/Tim23/Pmp24 family


Domain annotation for each model (and alignments):
>> Tim17  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.3   8.3   6.8e-36   1.2e-31       3     111 .]      17     123 ..      15     123 .. 0.96

  Alignments for each domain:
  == domain 1  score: 109.3 bits;  conditional E-value: 6.8e-36
       Tim17   3 yktglsgvlGallGavfglvkgsrradtpapskerlreglrsvgkrgpslGknfgvvgglysgiecaleklRgkediwnsvaAGaltGall..ragpqa 99 
                 +++g+++ +Ga++Gav++ vkg+r+++    ++er+  ++ ++++r+p lG+nfgv+ggl+s+++ca++++R+ked++n+++AG++tG+ l  r+g++a
  KKY19723.1  17 SDFGGAFCMGAIGGAVWHGVKGFRNSP----YGERRIGAITAIKARAPVLGGNFGVWGGLFSTFDCAIKGIRKKEDPYNAIIAGFFTGGSLaiRGGVKA 111
                 789**********************99....9**********************************************************9556***** PP

       Tim17 100 aavgaiggaafs 111
                 a ++ai++a+f+
  KKY19723.1 112 ARNSAIMCAIFL 123
                 *********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1061.67
//
Query:       KKY19724.1  [L=484]
Description: putative tpa: asparaginase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-55  185.9   0.0    7.8e-26   90.8   0.0    3.2  3  Asparaginase_2   Asparaginase
  ------ inclusion threshold ------
      0.068   11.9   0.0       0.12   11.1   0.0    1.3  1  G_glu_transpept  Gamma-glutamyltranspeptidase
      0.081   12.3   0.0       0.12   11.8   0.0    1.2  1  T3SS_TC          Type III secretion systems tip complex compo


Domain annotation for each model (and alignments):
>> Asparaginase_2  Asparaginase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   1.2e-22   7.2e-19       1      82 [.      16     100 ..      16     109 .. 0.95
   2 !   90.8   0.0   1.3e-29   7.8e-26      85     216 ..     124     273 ..     121     277 .. 0.78
   3 !   23.5   0.0   4.1e-09   2.5e-05     218     300 ..     373     470 ..     359     477 .. 0.76

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 1.2e-22
                     -EEEEEEEEESE-G...-HHHHHHHHHCHHHHHHHHHHHHHTT--HHHHHHHHHHHHHCTCCCSSSTTSS-BTTS---EEEEEEE CS
  Asparaginase_2   1 pvlvihGGAgsilk...tkereeavrkalkealeagykvLkeggsaldaVeaavrllEddplfnaGkGsvltedgeveldAsimd 82 
                     p+l++hGGAg+i     ++   ++++++l + +++  k+L++g++al a ++av l+E+dplfn G+Gsv+te+g++e++As+m 
      KKY19724.1  16 PTLILHGGAGRIAWenlPPALYKQYENSLLSYVTETRKLLDDGANALTAAVHAVALMEEDPLFNCGRGSVFTEKGTIEMEASVMV 100
                     689*********9888999*****************************************************************5 PP

  == domain 2  score: 90.8 bits;  conditional E-value: 1.3e-29
                     TTEEEEEEEESSBS-HHHHHHHHHHHC........S-SEEEHHHHHHHH.HHTT-----CGGG--HHHHHHHHHHHHCCCHS....B-S-BS-TT CS
  Asparaginase_2  85 tlraGaVagvkrvknpislArlvmeks........ehvlLvgegAeefa.reqglelvdeesllteerlkelekakkekaekk..eaknvsekel 168
                     ++ra +V+ v++ ++pi+lA+ v+ ++        +h  L+g   ee   +e gle+ ++e + t++r++e+ + +++    +  +  ++s++  
      KKY19724.1 124 QKRAASVILVTQTRHPIKLAEQVLIHTaeqvggvsRHCQLSGIEIEETGfKEWGLERKSKEWFWTKKRWEEHLRGLRKADGGSkgVLLDISTA-- 216
                     67899******************988622222222577777766665535999****************999886555444330033444433.. PP

                     T.........TT---EEEEEE-TTS-EEEEEEE--STTB-TTEE-STTSTTTSEEEE CS
  Asparaginase_2 169 k.........aklgTvGaValDsegnlAaaTSTgGltnklvGRvGDspiiGaGtYAd 216
                     +          + gTvG+V lDs+gn+ aaTSTgGltnk +GRvGD+p +GaG +A+
      KKY19724.1 217 DeglgdgyalPSQGTVGCVCLDSWGNIVAATSTGGLTNKKPGRVGDTPTVGAGFWAE 273
                     34688898888889*****************************************96 PP

  == domain 3  score: 23.5 bits;  conditional E-value: 4.1e-09
                     TTEEEEEEE-HHHHCCTTHHHHHHHHHHTTT--HHHHHHHHHHCHHH..........HTTT-EEEEEEE.....TTS-EEEEECSCCCEEEEEET CS
  Asparaginase_2 218 kvgAvsaTGkGeeiirellaadivalmeykglsleeAaekvieeklk..........rvkgsgGviavd.....kkGevaaefnsegmlrayake 297
                     ++ ++s TG+G++++r+++a+++ al + +g+ l+e    v     +            +g+gG+ia++      +Gev++ fn+ gm ra+ +e
      KKY19724.1 373 RAIGISGTGNGDSFLRVAAARTVGALSRFQGRPLNESLPLVAGALGElqqsagnrwgTGEGEGGMIAIElvdsrLEGEVVWDFNCGGMWRAFWDE 467
                     46789****************************99987655443333333555555455679*****963333358***************9988 PP

                     TS- CS
  Asparaginase_2 298 del 300
                     ++ 
      KKY19724.1 468 ERD 470
                     764 PP

>> G_glu_transpept  Gamma-glutamyltranspeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.1e-05      0.12     320     349 ..     222     251 ..     203     254 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.1e-05
                      GCSCG.TTEEEEEEEEETTS-EEEEEEEES CS
  G_glu_transpept 320 aeaaeesggTthlsvvDregnaVSltstin 349
                      + +a +s+gT+   ++D++gn+V++tst +
       KKY19724.1 222 DGYALPSQGTVGCVCLDSWGNIVAATSTGG 251
                      5678889*********************76 PP

>> T3SS_TC  Type III secretion systems tip complex components
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.9e-05      0.12       9      84 ..      95     170 ..      87     181 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.9e-05
                 -THHHHHHHHHHHHHHHHHHHHHHC..S.SSHHHHHHHHHHHHHHHHHHHHHHHHHHSS-S-------SSSTTTCC CS
     T3SS_TC   9 palaaerakadelgsaaeeveasvktstsehrvsdlislrqtateirlaaqalkkdlsqkeltkarleapqislde 84 
                  a++   +  +e g +  ev+  + + + ++r++++i + qt + i+la+q l +   q      + + ++i+++e
  KKY19724.1  95 EASVMVTSVRPEAGTSPAEVNGGIPPEAFQKRAASVILVTQTRHPIKLAEQVLIHTAEQVGGVSRHCQLSGIEIEE 170
                 5566667778889**************************************9988655554444444566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 3426.81
//
Query:       KKY19725.1  [L=560]
Description: putative septin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-30  105.8   0.0    1.3e-10   41.0   0.0    3.2  3  Septin        Septin
    0.00031   20.2   0.0    0.00053   19.4   0.0    1.3  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
  ------ inclusion threshold ------
      0.011   15.8   0.0       0.03   14.4   0.0    1.9  2  Dynamin_N     Dynamin family
      0.018   15.1   0.0      0.043   13.9   0.0    1.6  1  MMR_HSR1      50S ribosome-binding GTPase
       0.11   11.6   0.0       0.27   10.4   0.0    1.5  2  G-alpha       G-protein alpha subunit


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   3.1e-12   1.1e-08       5     123 ..     179     305 ..     176     312 .. 0.88
   2 !   26.2   0.0   1.3e-09   4.5e-06     129     189 ..     341     401 ..     328     414 .. 0.80
   3 !   41.0   0.0   3.6e-14   1.3e-10     203     275 ..     468     539 ..     450     544 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 3.1e-12
                 EEEEEEEBTTSSCCCCCCTTSSSS----........--------------S-EEEEEEEEETTCEEEEEEEE---BSSSSSHHCCCHHHHHHHHHHHHH CS
      Septin   5 ftlmvvGesglGkttlintlfetdliee........ekleeasekkkktveikkkkvvieedgvklnltviDtpgfGdavdnskswepiveyideqfee 95 
                 ++++v+G++  Gkt+++n l ++   +         e+le++  ++k + ++ ++  + e dg ++ lt+ D +g   +v  +   + + ++++++fe+
  KKY19725.1 179 YNVLVIGAKNSGKTSFLNFLRTSLALPPkkrptrapEELESPPPSAKASRNFVHHYLESEIDGERVGLTLWDSQGLEKNVV-DLQLREMSSFLESKFED 276
                 79****************9877665554577888887788888889999999999999999***************98875.456899*********** PP

                 HHHHCTSS--.SS-----EEEEEEEE-TT CS
      Septin  96 ylreesklkR.kkivDkRvHaclyfisPt 123
                  + ee k+ R   + D+ +H+++++++P+
  KKY19725.1 277 TFGEEMKVIRsPGVRDTHIHCVFFLLDPS 305
                 **********8899*************97 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 1.3e-09
                 HHHHHHHHHHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT--------SSSS-SC CS
      Septin 129 pldvelmkklsekvnliPviaKaDtltkeElkefKkkireeleeeeikiyklpdeeedede 189
                 ++++++++ l+ k  ++Pvi+KaDt+t+  ++ +K+ + ++l++  ++  +  + ee++++
  KKY19725.1 341 DFELQILRTLQGKTTVVPVISKADTITTAHMDFLKRAVWDSLKRAGLEPLEALNFEEESED 401
                 67899****************************************9998885554444432 PP

  == domain 3  score: 41.0 bits;  conditional E-value: 3.6e-14
                 SEEB-SSSSEEEESSSEEEEEEETTEEEETT-TTT-SCCHHHHHHHHHCHHHHHHHHHHTHHHHHHHHHH-XX CS
      Septin 203 PfaivgsneliekkgkkvrgRkypWGvvevenekhsdFlkLrklllkthledLkevteellYetyRseklskl 275
                 P +i++  + ++  g+   gRk+pWG  + +n++h+d++kL++ ++ ++  dL+e  +e+ Ye++R+++l+++
  KKY19725.1 468 PMSILSP-DSYSLGGDGPIGRKFPWGFADPYNPEHCDYVKLKENVFGEWRADLREASREVWYERWRTSRLNRQ 539
                 5555543.44555667778***************************************************876 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.5e-07   0.00053      34      65 ..     171     204 ..     143     211 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.5e-07
                   EGGGS-...SEEEE--TTSSHHHHHHHHHHHHHT CS
  FtsK_SpoIIIE  34 dlkkma..shllvaGatgsGKStalntLilSlat 65 
                     +k +   ++lv+Ga+ sGK+ +ln L +Sla+
    KKY19725.1 171 RRRKDPtpYNVLVIGAKNSGKTSFLNFLRTSLAL 204
                   444444449**********************997 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   8.4e-06      0.03       1      40 [.     181     219 ..     181     329 .. 0.83
   2 ?   -2.9   0.0       1.7     6e+03      31      55 ..     354     378 ..     344     428 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.4e-06
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEE CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelql 40 
                 ++v+G+ +sGK+S+ln L  +  lp ++ p Tr+p el+ 
  KKY19725.1 181 VLVIGAKNSGKTSFLNFLRTSLALPPKKRP-TRAPEELES 219
                 78********************9**99998.688877776 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.7
                 ---S-EEEEECCT---CCS...SSE CS
   Dynamin_N  31 tTrrplelqlgeeeeaseravkeel 55 
                 tT  p++ + ++  +a+ ++ k  +
  KKY19725.1 354 TTVVPVISKADTITTAHMDFLKRAV 378
                 3333333333333333333333333 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.2e-05     0.043       1      57 [.     180     259 ..     180     329 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.2e-05
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE...ETTEE....................EEEEECGGC....S CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk...lkgke....................ielvDtpGl....i 57 
                 +v+++G  N+GK++++n l  + a    k+  Tr ++e +         +                    ++l+D  Gl    +
  KKY19725.1 180 NVLVIGAKNSGKTSFLNFLRTSLALP-PKKRPTRAPEELESPppsA---KasrnfvhhyleseidgervgLTLWDSQGLeknvV 259
                 589****************8765533.4445566666665542220...13334444445555555555577777777443330 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   7.4e-05      0.27      12      44 ..     166     199 ..     156     213 .. 0.76
   2 ?   -3.2   0.0         1   3.7e+03     305     335 ..     263     298 ..     257     316 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 7.4e-05
                 XXXXXXXXE...EEEEEEEESTTSSHHHHHHHHH CS
     G-alpha  12 kaerkarkk.krevkllllGqseSGKsTilkqlk 44 
                    r +r+k  +++++l++G++ SGK+++l+ l+
  KKY19725.1 166 SPRRVRRRKdPTPYNVLVIGAKNSGKTSFLNFLR 199
                 33444555567899****************9776 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1
                 HHHHHHHHHHHHHCCCCCCESGGS.....CEEEEEE CS
     G-alpha 305 lesvlkylrnkFeeihkeksnnrr.....kiythft 335
                 l++ +++l++kFe+   e+ +  r       ++h++
  KKY19725.1 263 LREMSSFLESKFEDTFGEEMKVIRspgvrDTHIHCV 298
                 567789999999998776663332222114444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.53
# Mc/sec: 3195.07
//
Query:       KKY19726.1  [L=287]
Description: putative short-chain oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      8e-39  133.1   0.0    1.1e-38  132.7   0.0    1.1  1  adh_short       short chain dehydrogenase
      3e-21   76.0   0.0    4.2e-21   75.6   0.0    1.1  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    8.9e-08   32.3   0.0    1.3e-07   31.7   0.0    1.2  1  KR              KR domain
    4.5e-06   26.2   0.0    6.8e-06   25.7   0.0    1.4  1  DUF1776         Fungal family of unknown function (DUF1776)
    0.00015   21.8   0.0    0.00026   20.9   0.0    1.4  1  NAD_binding_10  NAD(P)H-binding
     0.0015   18.1   0.0     0.0021   17.6   0.0    1.3  1  Epimerase       NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.057   13.4   0.2       0.11   12.5   0.2    1.4  1  Integrase_Zn    Integrase Zinc binding domain
       0.12   12.6   0.0       0.28   11.5   0.0    1.6  1  Inhibitor_I67   Bromelain inhibitor VI


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.7   0.0   4.9e-42   1.1e-38       4     192 ..       7     193 ..       5     196 .. 0.94

  Alignments for each domain:
  == domain 1  score: 132.7 bits;  conditional E-value: 4.9e-42
                 EEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTT.SHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHH CS
   adh_short   4 lvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvt.dreevealvekavkklgkldvLvnNAGitgsgpfselseeew 101
                 +vtG++sG+G+ i+ ela++G  v++++r+ e++   + + ++    + ++q+Dv+ +++e+ ++v+ka++ +g++dvLvnNAG   +gpf++++e+ +
  KKY19726.1   7 FVTGCTSGFGKHICTELASRGDYVIATARNIERISSHIRQHQN----IRCLQLDVNvSKDEIANIVQKAIDFFGQIDVLVNNAGYPLVGPFEDIDERLV 101
                 79****************************9999777777666....9*************************************************** PP

                 HHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-.TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCT CS
   adh_short 102 ervievNltgvflltravlpamlkqssGrIvnvsSvagkvpv.agvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelre 192
                  +++ + ++g+++l+ a+lp++ +++sG+    sS+ + vp  +  + Y+++K+a+ag++r+l  e+++ gi+  ++  G++++++ ++++ 
  KKY19726.1 102 HEYMTTAFFGPLNLVNAILPHFRSRRSGTLLYNSSMYSYVPGaPLATYYASAKHALAGFARTLDLEVSQFGIKTLIIDSGYFRSKFLQRVNL 193
                 **************************************77651667778999*******************************999988775 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.0   1.9e-24   4.2e-21       1     183 [.      10     192 ..      10     213 .. 0.87

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 1.9e-24
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTT.SEEEE--TT.SHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelg.aevlecDVt.deeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   G  sg G++i  +la++G  v++t +n e+   + +  ++++  + l++DV+ ++++++++v+++ + fg++D+lvnnag+     gpf+++++  +
    KKY19726.1  10 GCTSGFGKHICTELASRGDYVIATARNIER---ISSHIRQHQnIRCLQLDVNvSKDEIANIVQKAIDFFGQIDVLVNNAGYPLV--GPFEDIDERLV 101
                   6789***********************998...444444444145799999846788*************************99..*********** PP

                   HHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSB.STTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGST CS
  adh_short_C2  96 draldvnlyslfllakaalplmkeg..gsivnlssvgaerv.vpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgik 183
                   ++ + + + + ++l++a+lp+++++  g ++  ss+ + +   p  + y+ aK+al +++r+l  e+ + gi+   +  g+ + +  ++++
    KKY19726.1 102 HEYMTTAFFGPLNLVNAILPHFRSRrsGTLLYNSSMYSYVPgAPLATYYASAKHALAGFARTLDLEVSQFGIKTLIIDSGYFRSKFLQRVN 192
                   ********************888776799998888877665277777*********************************99998888776 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   5.7e-11   1.3e-07       3     163 ..       6     164 ..       5     185 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 5.7e-11
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT.-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvs.dkdavealleeikaeeppikGvihaAgvlrdklleem 100
                  ++tG++ g+G+++++ la++g   ++ ++R+        ++i++  ++  +++++++Dv  +kd+++++++++ + +++i   ++ Ag    +++e+ 
  KKY19726.1   6 WFVTGCTSGFGKHICTELASRGD-YVIATARN-------IERISSHIRQHQNIRCLQLDVNvSKDEIANIVQKAIDFFGQIDVLVNNAGYPLVGPFEDI 96 
                 68********************7.67889999.......34555555667899******9746899********9999********************* PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHH.HH--TT-HHHHHHHHHHHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled....esldffvlfSSiag.llgsagqanYaaaNaflDalaeyr 163
                 ++  +++ +   + G  nL +++ +    ++   +++ SS+ + + g++  + Ya+a + l ++a++ 
  KKY19726.1  97 DERLVHEYMTTAFFGPLNLVNAILPhfrsRRSGTLLYNSSMYSyVPGAPLATYYASAKHALAGFARTL 164
                 *******************9997766777999999999**98857799999*********99999865 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0     3e-09   6.8e-06      96     201 ..      80     184 ..      17     214 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 3e-09
     DUF1776  96 ilvPslsy.ptgpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsisssln.lpfhapEalvssalsalfevLkrelrphnidv 192
                 +lv +  y  +gp+e i +  +++ +++ ++ p+ +++a+lp+++s   +++ ++++n s+ s +  +p +   a    al  ++++L+ e+++ +i++
  KKY19726.1  80 VLVNNAGYpLVGPFEDIDERLVHEYMTTAFFGPLNLVNAILPHFRS---RRSGTLLYNSSMYSYVPgAPLATYYASAKHALAGFARTLDLEVSQFGIKT 175
                 57778889889**********************************9...88**********9998625666667778899******************* PP

     DUF1776 193 tqikLGnld 201
                   i  G + 
  KKY19726.1 176 LIIDSGYFR 184
                 999988875 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.2e-07   0.00026       1      60 [.      10      70 ..      10      99 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.2e-07
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHH.HHCTTTCEEEE--TT.-CCHHHHHHTT CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklae.leaeeglevvegdvt.dvedlaealkg 60
                    G t + G+++++el++rg   v a +Rn e++++ ++++++++ +++dv+ +++++a+ ++ 
      KKY19726.1 10 GCTSGFGKHICTELASRG-DYVIATARNIERISShIRQHQNIRCLQLDVNvSKDEIANIVQK 70
                    567789***********6.789**********7527799**********9678999998874 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   9.4e-07    0.0021       2     120 ..       7     141 ..       6     171 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 9.4e-07
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..EEEE--TT-HH.....HHHHHHHHH.T-SEEEE--S..---HHHHHHSHH..HHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl..elveldltdrs.....alerlfkee.qpdavihlAa..vggvaassedpa..dfi 88 
                 +VtG t   G++++ +l+++g  vi+ +r+ ++  +  +++   +  +ld+  ++      ++++++ + q+d+ ++ A+    g+ + ++++   +++
  KKY19726.1   7 FVTGCTSGFGKHICTELASRGDYVIATARNIERISSHIRQHQniRCLQLDVNVSKdeianIVQKAIDFFgQIDVLVNNAGypLVGPFEDIDERLvhEYM 105
                 7********************9999999998888888888778888888887766666667888999889******99995556666666666433677 PP

                 HHHTHHHHHHHHHHHHH....TCTEEEEEEEGGGGT CS
   Epimerase  89 eknlqgtlnlleaarka....gvkrllflsSsevYG 120
                  + + g lnl++a+  +        ll+ sS   Y 
  KKY19726.1 106 TTAFFGPLNLVNAILPHfrsrRSGTLLYNSSMYSYV 141
                 788899999999998554222333788888855554 PP

>> Integrase_Zn  Integrase Zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   4.8e-05      0.11       4      31 ..      42      69 ..      41      70 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.8e-05
  Integrase_Zn  4 lHelhHvNakaLrkkFgitrkqAreIVq 31
                  +H   H+N + L+ + +++  +  +IVq
    KKY19726.1 42 SHIRQHQNIRCLQLDVNVSKDEIANIVQ 69
                  8999***********************9 PP

>> Inhibitor_I67  Bromelain inhibitor VI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012      0.28      17      40 ..       7      30 ..       5      31 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
                   T-SSEEEETTEEEE-EE--SSS-- CS
  Inhibitor_I67 17 fCkkCkaefGkyiCLDLisPnDCv 40
                   f   C + fGk+iC +L s  D v
     KKY19726.1  7 FVTGCTSGFGKHICTELASRGDYV 30
                   6678**************988866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 1951.79
//
Query:       KKY19727.1  [L=646]
Description: putative annexin anxc4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-14   51.6   1.5     0.0044   17.0   0.1    4.1  4  Annexin   Annexin
  ------ inclusion threshold ------
       0.22   11.2   0.0       0.59    9.8   0.0    1.7  1  ArgoL1    Argonaute linker 1 domain


Domain annotation for each model (and alignments):
>> Annexin  Annexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   9.2e-07    0.0082       2      61 ..     371     435 ..     370     439 .. 0.82
   2 !   17.0   0.1   4.9e-07    0.0044      15      62 ..     461     509 ..     454     513 .. 0.87
   3 ?   -0.4   0.0      0.14   1.3e+03       2      32 ..     534     564 ..     533     566 .. 0.84
   4 !   14.1   0.0   4.2e-06     0.038      29      60 ..     607     638 ..     575     644 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.2e-07
                 HHHHHHHHHSSSSSCHHHHHHHHHHSTHHHHHHHHHHHHHHH.....SS-HHHHHHHHS-HHHHH CS
     Annexin   2 dAelLkkamkglGtdektlieIlatRsnaqlqaifeeYkkky.....gkdLekdIksetsGdfek 61 
                 dA+ L+ka++   +d + +i+Il + s  ++   + eYkk+      g ++ k Ik ++ G++ k
  KKY19727.1 371 DAKALEKALNHHRVDTEPVIKILPHLSSDEILLLRTEYKKHAkvggaGINIAKQIKMKITGNLGK 435
                 9***************************************9722222457777777777777666 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 4.9e-07
                 SCHHHHHHHHHHSTHHHHHHHHHHHH.HHHSS-HHHHHHHHS-HHHHHH CS
     Annexin  15 tdektlieIlatRsnaqlqaifeeYk.kkygkdLekdIksetsGdfekl 62 
                 t+ + lie l  Rsn+++++i++ +  k+y+ dLe   k e++ d  +l
  KKY19727.1 461 TRRELLIESLMGRSNQEIREIKRCFSdKRYNDDLERCMKAELKADKFRL 509
                 88899********************8468*************9986665 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.14
                 HHHHHHHHHSSSSSCHHHHHHHHHHSTHHHH CS
     Annexin   2 dAelLkkamkglGtdektlieIlatRsnaql 32 
                 d+  L++a+ g++  e+++i+I++  + a++
  KKY19727.1 534 DVWDLHQALVGKEGGETAMIQIIVGETLAHI 564
                 66679999999999********998777776 PP

  == domain 4  score: 14.1 bits;  conditional E-value: 4.2e-06
                 HHHHHHHHHHHHHHHSS-HHHHHHHHS-HHHH CS
     Annexin  29 naqlqaifeeYkkkygkdLekdIksetsGdfe 60 
                 ++++++++ eY k+y+ d  +d+++e++G++ 
  KKY19727.1 607 PKHMERVKMEYFKRYKSDVRSDLEREVKGEVA 638
                 68***************************975 PP

>> ArgoL1  Argonaute linker 1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   6.6e-05      0.59      21      41 ..     275     295 ..     263     295 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 6.6e-05
      ArgoL1  21 gleawrGfyqSvRptqggLll 41 
                  lea+ G+yqS+ p  ++++l
  KKY19727.1 275 LLEAYHGTYQSISPMPSPMML 295
                 69************9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 4104.91
//
Query:       KKY19728.1  [L=159]
Description: putative 60s ribosomal protein l21 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-46  154.9   4.1    6.3e-46  154.4   4.1    1.2  1  Ribosomal_L21e  Ribosomal protein L21e


Domain annotation for each model (and alignments):
>> Ribosomal_L21e  Ribosomal protein L21e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.4   4.1   3.5e-50   6.3e-46       1     100 [.       1     100 [.       1     101 [. 0.98

  Alignments for each domain:
  == domain 1  score: 154.4 bits;  conditional E-value: 3.5e-50
                     X--S-STTTT-TTTTS--GGG-SS--SHHHH----TT-EEEE---TT--SS---GGGTT-EEEE..EEEETTEEEEEEEETTE..EEEEEE-GGG CS
  Ribosomal_L21e   1 mknskglrrgtrklfskkfrkkgvpplstylreykkGdkVdikidpsvqkgmphkryhGktgrvynvtkravgvivnkkvggkileKriivrieh 95 
                     m +s+glr+gtr++fs++f+kkg++ l+tylr+yk+Gd+Vdik++++vqkgmp+k+yhGktg++ynvtk+avgvi+nkkvg++++eKr++vrieh
      KKY19728.1   1 MGKSAGLRSGTRYAFSRDFKKKGHIALQTYLRTYKVGDIVDIKANGAVQKGMPYKVYHGKTGVIYNVTKSAVGVIINKKVGSRYIEKRVNVRIEH 95 
                     889******************************************************************************************** PP

                     EEE-- CS
  Ribosomal_L21e  96 lkksk 100
                     ++ s+
      KKY19728.1  96 ISLSR 100
                     *9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       888  (0.0495287); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.32s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 1000.15
//
Query:       KKY19729.1  [L=191]
Description: putative 40s ribosomal protein s9 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.5e-12   44.4   0.9    9.5e-12   44.4   0.9    2.5  3  S4            S4 domain
    4.2e-05   24.4   0.2    8.3e-05   23.4   0.2    1.6  1  Ribosomal_S4  Ribosomal protein S4/S9 N-terminal domain


Domain annotation for each model (and alignments):
>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.14   1.3e+03      16      22 ..      51      57 ..      43      59 .. 0.75
   2 ?   -2.8   0.1      0.62   5.5e+03       1       8 [.      89      96 ..      89      97 .. 0.86
   3 !   44.4   0.9   1.1e-15   9.5e-12       1      44 [.     105     148 ..     105     151 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.14
                HHHHHHH CS
          S4 16 rreArql 22
                rr Arql
  KKY19729.1 51 RRAARQL 57
                8999998 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.62
                EEHHHHHH CS
          S4  1 rRLdkvla 8 
                + Ld vla
  KKY19729.1 89 MKLDYVLA 96
                78****97 PP

  == domain 3  score: 44.4 bits;  conditional E-value: 1.1e-15
                 EEHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-T CS
          S4   1 rRLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkp 44 
                 rRL++ +++lgla+s+ +Ar lI++++++V +++v+ ps+ V+ 
  KKY19729.1 105 RRLQTCVYKLGLAKSIHHARVLIKQRHIRVGKQIVNVPSFVVRL 148
                 8***************************************9985 PP

>> Ribosomal_S4  Ribosomal protein S4/S9 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.2   9.3e-09   8.3e-05      37      81 ..      15      60 ..       4     104 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 9.3e-09
                  -CHCH.HHHHHHHHHHHHT-S.HHHHHHHHHHHHHCCSHHHHHHHHH CS
  Ribosomal_S4 37 seYgk.qlrekqklkrrYgll.ekqfrryfkearrirGktgenLlql 81
                   ++++ +l+ + k  ++Ygl+ +++++r++  +++ir + +++Ll+l
    KKY19729.1 15 RPFESaRLDGELKTVGEYGLRnKREVWRVQLTLSKIR-RAARQLLTL 60
                  389999*******************************.*******94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.33s 00:00:00.83 Elapsed: 00:00:00.51
# Mc/sec: 1128.72
//
Query:       KKY19730.1  [L=305]
Description: hypothetical protein UCRPC4_g04431 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.35   10.8   7.6       0.11   12.5   3.7    1.9  2  Lipoprotein_6    Lipoprotein
       0.67   10.1  18.1       0.29   11.3   7.7    3.2  3  Fib_alpha        Fibrinogen alpha/beta chain family
       0.87    8.9   6.5      0.073   12.5   0.4    2.1  2  SelP_N           Selenoprotein P, N terminal region
       0.93    9.8  14.6       0.44   10.9   7.5    3.1  2  BLOC1_2          Biogenesis of lysosome-related organelles co
        2.2    7.9  12.7       0.96    9.1   6.8    2.4  2  RasGAP           GTPase-activator protein for Ras-like GTPase
        2.4    8.4  27.4      0.074   13.2   4.9    4.6  3  Cnn_1N           Centrosomin N-terminal motif 1
        2.4    8.8  23.1       0.23   12.1   5.1    3.5  4  YabA             Initiation control protein YabA
          4    7.9  38.3        2.5    8.5  33.3    2.7  2  Fez1             Fez1
        5.2    7.1  14.3       0.86    9.7   7.5    2.4  2  DUF1664          Protein of unknown function (DUF1664)
        5.9    6.8  16.3      0.065   13.1   3.7    2.7  3  Lipoprotein_20   YfhG lipoprotein
        7.5    5.3   9.2        8.9    5.1   9.2    1.2  1  LMBR1            LMBR1-like membrane protein


Domain annotation for each model (and alignments):
>> Lipoprotein_6  Lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   3.7   6.6e-05      0.11      74     147 ..     118     190 ..     112     199 .. 0.66
   2 ?   -0.8   0.1      0.84   1.4e+03      76     110 ..     219     253 ..     210     289 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.6e-05
                    HT---TT.....THHHHHHHHHHHHHHHHHHHHTHHHHSS..S---.HHHHHHHH-TTSS--TTTHHHHHHHHHHHH CS
  Lipoprotein_6  74 kaLekeaekfnelkakvvavkkkseaflnklkekhadlgk..edat.DedakkailksngtkdkGaeeLvkLntaie 147
                    +++e e+ +++e+k+++ + k ++e++++++ke+   l+k  e+++ D +  +++ ++     +G + +  L t++e
     KKY19730.1 118 ENVELET-ETAEMKKQLKEKKVEVEKMVDQMKEESESLAKmwEEVQrDVERLEVLEREV---RQGEQRVESLRTEVE 190
                    4455555.459****************************94434431444444444444...444444455555555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.84
                    ---TT.....THHHHHHHHHHHHHHHHHHHHTHHH CS
  Lipoprotein_6  76 Lekeaekfnelkakvvavkkkseaflnklkekhad 110
                    + +++++++++  ++ + +k+  a +  +  ++ d
     KKY19730.1 219 IAQREQEMKDMERQIQELRKEEPARVREVELAEKD 253
                    45555666677777777776665555544433333 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.17   2.8e+02     102     127 ..      17      42 ..       4      76 .. 0.74
   2 ?   11.3   7.7   0.00018      0.29      53     130 ..     121     194 ..     110     201 .. 0.63
   3 ?    2.8   0.6     0.073   1.2e+02      40      73 ..     212     245 ..     207     269 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha 102 snirvLqnvlesneqkiqkLeqdidq 127
                   + +Lqn +esn  +i +L + i++
  KKY19730.1  17 DLLSQLQNQHESNPLSILRLSEPISA 42 
                 45677777777777777777766654 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  53 eaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqker 130
                 e e+ + e+k++l+ek+ +    ++++ ++++e e   +++ e++++ +++++vL   +++ eq+++ L++++++ke+
  KKY19730.1 121 ELETETAEMKKQLKEKKVEV---EKMVDQMKEESE-SLAKMWEEVQRDVERLEVLEREVRQGEQRVESLRTEVEEKEA 194
                 33333444444444433333...467777777777.777777777777777777777777777777777777777764 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.073
                 CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  40 leneleeisnstkeaeelvkeikdslrekqkskk 73 
                 le++l+ i+++++e++++ ++i++  +e+ +  +
  KKY19730.1 212 LEDTLALIAQREQEMKDMERQIQELRKEEPARVR 245
                 6677777777777777777777777666655544 PP

>> SelP_N  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   4.5e-05     0.073     129     187 ..      86     149 ..      78     194 .. 0.65
   2 ?   -1.3   1.0      0.73   1.2e+03     181     210 ..     258     283 ..     219     297 .. 0.39

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.5e-05
      SelP_N 129 ysfltfpyveeaikatyceekCGnCslesseaee.eckevtk....aaeekpaeaeekteheha 187
                 ++ l+f+y+e+  k+ y   + G+  + ++++e+ e ++ t     + +ek  e e+++++ ++
  KKY19730.1  86 FTKLHFSYIEQVTKEKYLRAIVGDPPVLHTHQENvELETETAemkkQLKEKKVEVEKMVDQMKE 149
                 889*********************8776655544133333331111334444444333333333 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.73
      SelP_N 181 ktehehahshkqghkhhekhghhHkekeel 210
                 k++++ a     +  ++ +  ++H++++e+
  KKY19730.1 258 KHRRDIA----TAEANEARRRKEHGGRDEV 283
                 1111111....2222222223333333333 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   7.5   0.00027      0.44      25      85 ..     140     200 ..     116     210 .. 0.81
   2 ?    1.8   0.8      0.19     3e+02      48      72 ..     214     238 ..     207     259 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00027
     BLOC1_2  25 LeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLD 85 
                 +ek+  ++ e+ ++l+++ +++++++e+l+ ++ e+++  q+++ + ++v+e e++v  LD
  KKY19730.1 140 VEKMVDQMKEESESLAKMWEEVQRDVERLEVLEREVRQGEQRVESLRTEVEEKEATVMDLD 200
                 5788888888888888888888888888888888888888888888888888888888888 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.19
     BLOC1_2  48 kkleklnekyeelqpylqqidqiek 72 
                 ++l  + ++++e++ + +qi+++ k
  KKY19730.1 214 DTLALIAQREQEMKDMERQIQELRK 238
                 4445555555555555555555544 PP

>> RasGAP  GTPase-activator protein for Ras-like GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.3     0.073   1.2e+02      52     105 ..      16      69 ..       9      82 .. 0.83
   2 ?    9.1   6.8   0.00059      0.96      24     111 ..      84     169 ..      73     259 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.073
      RasGAP  52 qkilekedlnlelDPrkiyeelkkkkesktgkksessgkksekeaselekvsqm 105
                 q++l++ +++ e++P  i +  +  +   t+k s++  k s++  ++++ +s+ 
  KKY19730.1  16 QDLLSQLQNQHESNPLSILRLSEPISAAATTKSSQLAAKRSSNASEDNSDSSEN 69 
                 555666778889***********9999999999999999999988888877765 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00059
      RasGAP  24 svvsklleeytkrpegqeyLkkilkpl.lqkilekedlnlelDPrkiyeelkkkkesktgkk..............sessgkksekeaselekvsqmle 107
                  +++kl  +y ++   ++yL++i++++ +  +  +e+ +le+   +++++lk+kk + ++                +                + q++ 
  KKY19730.1  84 DLFTKLHFSYIEQVTKEKYLRAIVGDPpVLHT-HQENVELETETAEMKKQLKEKKVEVEKMVdqmkeeseslakmwE----------------EVQRDV 165
                 688999999****9***********9845555.6********************99986642223333333333330................333333 PP

      RasGAP 108 knld 111
                 ++l+
  KKY19730.1 166 ERLE 169
                 3333 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   4.9   4.5e-05     0.074      41      70 ..     115     144 ..     110     147 .. 0.90
   2 ?   -0.8   8.1       1.1   1.7e+03      35      66 ..     152     196 ..     135     201 .. 0.48
   3 ?    3.4   1.2     0.054        88       2      15 ..     226     239 ..     225     240 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.5e-05
      Cnn_1N  41 llkenielkveveslqkelkekkkllreae 70 
                 +++en+el++e ++++k+lkekk +++++ 
  KKY19730.1 115 THQENVELETETAEMKKQLKEKKVEVEKMV 144
                 799********************9998875 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.1
      Cnn_1N  35 e.............eqkeellkenielkveveslqkelkekkkll 66 
                 e             e  e l++e  + +++vesl+ e++ek+  +
  KKY19730.1 152 EslakmweevqrdvERLEVLEREVRQGEQRVESLRTEVEEKEATV 196
                 222223334444444555555555666666666666666666555 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.054
      Cnn_1N   2 lrEqeeqidkLkKE 15 
                 ++++e qi++L+KE
  KKY19730.1 226 MKDMERQIQELRKE 239
                 799**********9 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       4.9     8e+03      38      38 ..      29      29 ..       7      70 .. 0.53
   2 ?   12.1   5.1   0.00014      0.23      33      79 ..     114     160 ..      83     162 .. 0.91
   3 ?    1.4   0.2      0.32   5.1e+02       8      33 ..     166     191 ..     161     200 .. 0.80
   4 ?    6.2   2.4    0.0096        16       8      66 ..     217     275 ..     211     298 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.9
                H CS
        YabA 38 n 38
                n
  KKY19730.1 29 N 29
                1 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00014
                 HHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        YabA  33 elleenaeLeleneklrerleeeekkekekkkelsegkenLarlYee 79 
                 ++ +en eLe+e  +++++l+e++ + ++   +++e  e+La+++ee
  KKY19730.1 114 HTHQENVELETETAEMKKQLKEKKVEVEKMVDQMKEESESLAKMWEE 160
                 6789****************************************998 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.32
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA   8 dkleeleeqleelleeleelkeelae 33 
                 ++le le+++++  +++e+l++e++e
  KKY19730.1 166 ERLEVLEREVRQGEQRVESLRTEVEE 191
                 67888999999999999999998876 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0096
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXX CS
        YabA   8 dkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkel 66 
                 + +++ e++++++ ++++el++e  + + e +  e + e l++r + ++++++e ++++
  KKY19730.1 217 ALIAQREQEMKDMERQIQELRKEEPARVREVELAEKDVEALKHRRDIATAEANEARRRK 275
                 567788999************99999999999888889999888833333332222222 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.75   1.2e+03      51     100 ..      16      67 ..       3     104 .. 0.47
   2 ?    8.5  33.3    0.0015       2.5      30     173 ..     116     297 ..     111     298 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.75
        Fez1  51 eeeikeleesleektlelevcenelqrk..kseaellrekvekleeelkelr 100
                 ++ +++l+++ e+  l++ ++ + ++ +  +++++l  ++ ++++e+ ++  
  KKY19730.1  16 QDLLSQLQNQHESNPLSILRLSEPISAAatTKSSQLAAKRSSNASEDNSDSS 67 
                 3333333444444334433333333332112222222223333333333333 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0015
        Fez1  30 lseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa.............. 114
                  +e v+l +++ e++++l+ek  e++++ ++++e +++l ++ +e+qr  ++ e+l+ +v++ e+ +++lr+e++e++++  +                
  KKY19730.1 116 HQENVELETETAEMKKQLKEKKVEVEKMVDQMKEESESLAKMWEEVQRDVERLEVLEREVRQGEQRVESLRTEVEEKEATVMDLDgpqnepdqklgled 214
                 6899********************************************************************999966555544489999999999888 PP

        Fez1 115 ................lesdeakaqrqe..................aeeleelkreverlraeLkeerqkkeeqassFeqERrtWqeeKekVi 173
                                            +                  ++++e+lk++ +   ae +e r++ke+   +  +ER  W +  ++V 
  KKY19730.1 215 tlaliaqreqemkdmeR----------QiqelrkeeparvrevelaEKDVEALKHRRDIATAEANEARRRKEHGGRDEVEERGRWYKSQQQVY 297
                 87777665533332220..........1233555556665555555566666666666666699999***999999999******99998885 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   7.5   0.00053      0.86      52     119 ..     128     191 ..     113     203 .. 0.47
   2 ?    1.0   0.5      0.25     4e+02      82     103 ..     219     240 ..     207     267 .. 0.48

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00053
     DUF1664  52 qvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskler 119
                 +++++l++ k + ++ +d++ ++ ++ +++ +e++    +  e l+ ++++v++ ++ ve+l +++e+
  KKY19730.1 128 EMKKQLKEKKVEVEKMVDQMKEESESLAKMWEEVQ----RDVERLEVLEREVRQGEQRVESLRTEVEE 191
                 22333333333333333333333333333333333....33333444556666666666666665554 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.25
     DUF1664  82 skeikeevtevredlseigedv 103
                 +++ ++e+++++++++e++++ 
  KKY19730.1 219 IAQREQEMKDMERQIQELRKEE 240
                 4444444444444444443332 PP

>> Lipoprotein_20  YfhG lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.1   6.7e+03      22      36 ..      24      38 ..      12      67 .. 0.51
   2 ?   13.1   3.7     4e-05     0.065      98     167 ..     111     180 ..      79     188 .. 0.90
   3 ?    1.8   1.3      0.12     2e+02     137     167 ..     208     239 ..     195     247 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.1
  Lipoprotein_20 22 kealenaLyWlramd 36
                    ++ + n+L  lr  +
      KKY19730.1 24 NQHESNPLSILRLSE 38
                    344445555555433 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4e-05
  Lipoprotein_20  98 pllqlWreqqalqlalaeeraryqrlqeesdskldslreqqaaLeaeLeettrKLenLtdiERqLssRkq 167
                     p+l++ +e+ +l+ + ae +++ +  + e ++ +d+++e+ + L +  ee++r +e+L  +ER +    q
      KKY19730.1 111 PVLHTHQENVELETETAEMKKQLKEKKVEVEKMVDQMKEESESLAKMWEEVQRDVERLEVLEREVRQGEQ 180
                     7888999999999999***********************************************8766555 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.12
  Lipoprotein_20 137 qqaaLeaeLeettrKLenLtdiERqLss.Rkq 167
                     q+  Le  L+ + ++ +++ d+ERq+   Rk+
      KKY19730.1 208 QKLGLEDTLALIAQREQEMKDMERQIQElRKE 239
                     6778999999999999*********9752554 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   9.2    0.0054       8.9     210     321 ..     120     277 ..      35     298 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0054
       LMBR1 210 aklntekeeaereledllkevkklrksisesdp.lrkyleeilk....................kvPeeiaeklks....................... 264
                 ++l+te +e++++l++++ ev+k+ ++++e+++ l k+ ee+ +                    +  +e++    +                       
  KKY19730.1 120 VELETETAEMKKQLKEKKVEVEKMVDQMKEESEsLAKMWEEVQRdverlevlerevrqgeqrveSLRTEVE----Ekeatvmdldgpqnepdqklgled 214
                 44555555555555555555555544444444334444444444333333333333333332222222222....133335666777777777777777 PP

       LMBR1 265 ......nenkteeslaklekqlikalqkrertekqwkrllekalelediiknksskekefkss 321
                       ++++ ++ + +  ++l k+   r+r+ ++ ++ +e   +  di+ +++++ ++ k+ 
  KKY19730.1 215 tlaliaQREQEMKDMERQIQELRKEEPARVREVELAEKDVEALKHRRDIATAEANEARRRKEH 277
                 776554444444555555555555566788888999999999999999999999887776644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2996  (0.167104); expected 358.6 (0.02)
Passed bias filter:                      750  (0.0418317); expected 358.6 (0.02)
Passed Vit filter:                       140  (0.00780858); expected 17.9 (0.001)
Passed Fwd filter:                        65  (0.00362541); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.08u 0.38s 00:00:01.46 Elapsed: 00:00:00.57
# Mc/sec: 1617.49
//
Query:       KKY19731.1  [L=237]
Description: hypothetical protein UCRPC4_g04432 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.13   12.0   4.9       0.21   11.3   4.9    1.2  1  Sarcolipin      Sarcolipin
       0.68    8.5   7.9        0.8    8.3   7.9    1.1  1  Ndc1_Nup        Nucleoporin protein Ndc1-Nup
        4.9    7.1   5.6        7.6    6.5   5.6    1.3  1  Neur_chan_memb  Neurotransmitter-gated ion-channel transmembr
        5.6    7.0  11.9         11    6.0  11.5    1.5  2  CAML            Calcium signal-modulating cyclophilin ligand


Domain annotation for each model (and alignments):
>> Sarcolipin  Sarcolipin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   4.9   4.7e-05      0.21      12      26 ..     166     180 ..     164     184 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.7e-05
  Sarcolipin  12 FTvVLITViLmWLLV 26 
                 F  VLIT +L+W+LV
  KKY19731.1 166 FVGVLITMLLIWILV 180
                 566***********9 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   7.9   0.00018       0.8     358     452 ..      28     130 ..      12     205 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00018
    Ndc1_Nup 358 pkaaps...kapknkasapvkelprlsksplkkk..ddeifgnsltaeaspkssssskegvekalsslakspgqs.psptarls........prarkll 442
                 + +a++   ++pk+++ +++ke++  s  ++k+k  d+++ +++l+a++ ++ ++++ e+++  +s   ++ ++s +  +   +        ++++k  
  KKY19731.1  28 KDTAAPtavTPPKSNKVKKNKEHSNHS--KPKNKgtDKDLSQTTLAAQKENHVTNEKEEHLKPIISGEKSQRSNSnS-EA---KedtvtvsnEQKKKNP 120
                 222222455445555555555555554..444445455566655666666666777777777777777777666641.22...1223456667777777 PP

    Ndc1_Nup 443 ekaksrllsk 452
                 +k+ks+++++
  KKY19731.1 121 KKGKSEVVKE 130
                 7777777772 PP

>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   5.6    0.0017       7.6      88     178 ..      21     131 ..      11     181 .. 0.35

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0017
                     S---HHHHHHHTTHHHHHHC--------------.............------..-------------..........----------------- CS
  Neur_chan_memb  88 thtmpawvrkvfldklprllfmkrpsevkdnekkl............ssgass..eaeelilskskse..........skkaklseeqgsekast 158
                     t +mp+++ +++   +   +  k++++++++++++            +    +  +++e  ++++k+e          s+++++++e +++  + 
      KKY19731.1  21 TTNMPPKKDTAAPTAVTPPKSNKVKKNKEHSNHSKpknkgtdkdlsqT----TlaAQKENHVTNEKEEhlkpiisgekSQRSNSNSEAKEDTVTV 111
                     455555555555554444333333333333333332333333333220....0211111111111111122222211122222222222222222 PP

                     --SS---TTGGG--.....- CS
  Neur_chan_memb 159 ckckckegeeaspstqlske 178
                     ++ ++k++ ++++s++ ++e
      KKY19731.1 112 SNEQKKKNPKKGKSEVVKEE 131
                     22222222222222222222 PP

>> CAML  Calcium signal-modulating cyclophilin ligand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   1.2     0.013        58      81     152 ..      15      83 ..       7      88 .. 0.68
   2 ?    6.0  11.5    0.0025        11      36     147 ..      47     164 ..      39     166 .. 0.60

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.013
        CAML  81 staerkgsklpdkkdsl.tkesseddsaelrkrergelssdeasrsprrglekyLsrfdeamklrkqLanekp 152
                  ta ++++++p kkd+  +++++  +s++++k ++    + ++s++ ++g +k Ls+   a +  ++++nek 
  KKY19731.1  15 RTASTQTTNMPPKKDTAaPTAVTPPKSNKVKKNKE----HSNHSKPKNKGTDKDLSQTTLAAQKENHVTNEKE 83 
                 45556666777777777344455556666665544....3367888889999999999999998999999986 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0025
        CAML  36 eeeeesevesklqldldkleslslssvskrv.llgds........sgakdksksstaerkgsklpdkkdsltkesseddsaelrkrergelssdeasrs 125
                 ++e+++++++k ++ +dk  s ++ +++k   ++++         sg+k+++++s +e k+ +++ ++++ +k+ ++ +s+ +++   g  ++d++++ 
  KKY19731.1  47 NKEHSNHSKPK-NKGTDKDLSQTTLAAQKENhVTNEKeehlkpiiSGEKSQRSNSNSEAKEDTVTVSNEQKKKNPKKGKSEVVKEEPLG--TKDDNEEK 142
                 34444444444.33333332333223333321222224455555688888888999999998888887777666666666666666554..55667777 PP

        CAML 126 prrglekyLsrfdeamklrkqL 147
                  + g ++ Lsr+d +  +r++L
  KKY19731.1 143 KSLGTKDSLSRYDVSRLMRHRL 164
                 88999********999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2146  (0.119694); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:00.54
# Mc/sec: 1322.04
//
Query:       KKY19732.1  [L=1416]
Description: putative mitochondrial carrier protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-56  186.1   0.8    6.5e-22   77.3   0.1    3.4  3  Mito_carr        Mitochondrial carrier protein
    0.00013   22.0   0.6    0.00064   19.9   0.0    2.6  3  Myb_DNA-binding  Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.036   14.1   1.0       0.14   12.2   0.1    2.3  2  PT-VENN          Pre-toxin domain with VENN motif


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   1.3e-23   7.6e-20       3      94 ..    1095    1213 ..    1093    1216 .. 0.82
   2 !   77.3   0.1   1.1e-25   6.5e-22       6      95 ..    1226    1318 ..    1221    1320 .. 0.87
   3 !   34.9   0.0   1.8e-12   1.1e-08       6      66 ..    1341    1406 ..    1337    1412 .. 0.81

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 1.3e-23
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...........................CCCSSTTTSCSS..........HHHHHHHHHHHHHHH CS
   Mito_carr    3 lsvlkellaGglagavatlvttPldvvKtrlqt...........................qkksskksksaa..........ildvlkkiykeeGlr 62  
                  +++++++l G+++g++a+++t Pldv+Ktrlq+                           +                     +l +l++i  +eG+r
  KKY19732.1 1095 VKPWAHFLGGAVGGMTAATLTSPLDVLKTRLQSdfyqsqlralheahpiplpqtsiqrivS----------VpraayvhlaeTLAILGSIRTNEGIR 1181
                  689******************************7766666666666555555555544443..........05555556666*************** PP

                  GGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   63 glyrGllpnllrvapasalkfvlyetlkrlll 94  
                  gl+rGl +nl++v+pa+a++f +y   kr++ 
  KKY19732.1 1182 GLFRGLDANLVGVVPARAINFYVYGNGKRIYG 1213
                  **************************999886 PP

  == domain 2  score: 77.3 bits;  conditional E-value: 1.1e-25
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS....HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr    6 lkellaGglagavatlvttPldvvKtrlqtqkksskksksaa....ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95  
                    +lla+++ag++++++t+P++vvKtrlq++k+ ++ s++++     +d++kk+++ eG++glyrGl+++ l+v+ +s l++vlye +k  l++
  KKY19732.1 1226 SVHLLAAATAGIATGTATNPIWVVKTRLQLDKNAAAGSGKQReyknSWDCVKKTVRGEGIKGLYRGLSASYLGVT-ESTLQWVLYERMKLALKR 1318
                  579***************************7776544444334455****************************9.************988865 PP

  == domain 3  score: 34.9 bits;  conditional E-value: 1.8e-12
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH......CCCSSTTTSCSSHHHHHHHHHHHHHHHGGGT CS
   Mito_carr    6 lkellaGglagavatlvttPldvvKtrlqt......qkksskksksaaildvlkkiykeeGlrglyr 66  
                    +l a+g+a+++a+ +t+P +vv+trl        ++++ ++ k++++++++ ++ keeGl+gly 
  KKY19732.1 1341 GGKLTAAGAAKLFAAALTYPHEVVRTRLRQapvvkvAGGK-AEMKYKGLVNCFATVAKEEGLSGLYE 1406
                  56899***********************994555432222.3334445******************5 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.88   5.2e+03      18      33 ..     264     279 ..     261     287 .. 0.84
   2 ?   -3.0   0.2       1.5   8.9e+03       1      11 [.     491     501 ..     491     503 .. 0.84
   3 !   19.9   0.0   1.1e-07   0.00064       2      45 ..     642     694 ..     641     695 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.88
                      HHTTCHHHHHHHHTSS CS
  Myb_DNA-binding  18 khGnrWkkIaerlggR 33 
                      +hGn +++ ++++++R
       KKY19732.1 264 EHGNLPRELSSHVQNR 279
                      89999********998 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.5
                      CSSSBHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdel 11 
                      r +W  +E+e 
       KKY19732.1 491 RVQWDDDEEEA 501
                      679******96 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 1.1e-07
                      SSSBHHHHHHHHHHHHHHTTCHHHHHH.........HHTSS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 gkWteeEdelLleavkkhGnrWkkIae.........rlggRtekqcrsrwrny 45 
                       +++  E++++le+v+ +G +W++I +         +l +R+  + +++ rn+
       KKY19732.1 642 TPYSRSEENRILELVEVYGTSWTLIKKmdqvhpdgpELDNRSQVDLKDKCRNM 694
                      578999*******************999988888888889********99985 PP

>> PT-VENN  Pre-toxin domain with VENN motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.41   2.4e+03      19      31 ..    1102    1114 ..    1095    1116 .. 0.68
   2 ?   12.2   0.1   2.4e-05      0.14       4      31 ..    1216    1243 ..    1214    1264 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.41
     PT-VENN   19 aaGlaGgvvggtl 31  
                  ++G++Gg +  tl
  KKY19732.1 1102 LGGAVGGMTAATL 1114
                  6777777777665 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 2.4e-05
     PT-VENN    4 LteeEKqtvsalstlaaGlaGgvvggtl 31  
                  L++eEK++v ++  laa+ aG ++g  +
  KKY19732.1 1216 LNPEEKENVWSVHLLAAATAGIATGTAT 1243
                  9***********************9443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.51
# Mc/sec: 8279.42
//
Query:       KKY19733.1  [L=267]
Description: putative transcription regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0015   18.4   0.0      0.061   13.1   0.0    2.5  3  TENA_THI-4  TENA/THI-4/PQQC family


Domain annotation for each model (and alignments):
>> TENA_THI-4  TENA/THI-4/PQQC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   3.4e-06     0.061       2      53 ..      15      66 ..      14      69 .. 0.86
   2 ?   -2.6   0.0      0.23     4e+03      65      92 ..      92     119 ..      87     130 .. 0.75
   3 !    2.7   0.0    0.0053        95     149     206 ..     204     266 ..     159     267 .] 0.65

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.4e-06
                HHCHHHHHHHHCSHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  TENA_THI-4  2 aqlrpiwkeyinHpFvkalakGtlpreqfqayviqdylylknfvrvlaiils 53
                ++  +++ke+++ +F +   +G+lp  q+ +++ qd+ly  ++ r+ + +ls
  KKY19733.1 15 PSTNSKYKEATQSEFLALAGQGKLPLPQLSQWLSQDRLYAEAYLRFIGGVLS 66
                5666778888888999999*************************99876666 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.23
                 HHHHHHHHHCHHHHHHHHHHHTT-HHHH CS
  TENA_THI-4  65 esrivdhdgeeielhlrlaealGlsree 92 
                  + ++d +  e++ ++  a+ +G+++  
  KKY19733.1  92 LQSALDGIVRELAFFEATAKDYGIDLAA 119
                 5678888888888888888888888765 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.0053
                 CHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHT.SHHH....HHHHHHHHHHHHHHHHHHHHHH CS
  TENA_THI-4 149 peyyewvkeyaseefraaveeakrllerllak.vsde....qleelqeiflkalefetsfltm 206
                 +  +e++ +++s ef + ve  +  l+ l  k +s++    +  e+ ++ +++l++e+ f+++
  KKY19733.1 204 ALRKEFIPNWTSNEFVEFVEGIEVCLNDLASKeASKSgreaVETEALKVWEEVLDLEVGFWPS 266
                 455788889999999999888776666554330333311113556667777889999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 1622.69
//
Query:       KKY19734.1  [L=197]
Description: putative arp2 3 complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-45  154.8   0.0    2.5e-45  154.6   0.0    1.0  1  P16-Arc   ARP2/3 complex 16 kDa subunit (p16-Arc)
  ------ inclusion threshold ------
      0.045   14.2   3.6       0.08   13.4   3.6    1.4  1  DUF1720   Domain of unknown function (DUF1720)


Domain annotation for each model (and alignments):
>> P16-Arc  ARP2/3 complex 16 kDa subunit (p16-Arc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.6   0.0   2.8e-49   2.5e-45       1     148 []       5     197 .]       5     197 .] 0.93

  Alignments for each domain:
  == domain 1  score: 154.6 bits;  conditional E-value: 2.8e-49
                 XXXXXXXXXXXXXX...XXXXXXXX..XXXXX---GGGGTHHHHHHHHHHS--HHHHHHHTSS---S-S-HHHHHHHHHHHHHHHHTS-GGGHHHHHH. CS
     P16-Arc   1 afRkidvDaldedk...fkeeelap..espeeseaevqqkesevrsllrsgdaeeALkaalknppygakeqaakeralqlvlevLssikasdiekavk. 93 
                 ++R+idvDa+d+++   f  e+l p    ++++++e+++ ++++r+llr+gd e+AL+ +l+++p+g++ + ak+ ++++v+evL+ i++sd+++++  
  KKY19734.1   5 NYRTIDVDAYDPESsknFPLETLLPatLPAPSTASEAASVAQQIRQLLRAGDSEGALSGVLETAPLGGD-EGAKQVHTTTVIEVLQGIRQSDVSRVLGt 102
                 79***********5579*******984334589999*********************************.7************************9998 PP

                 ....HS-HHHHHHHHHHHHHHTT-------....................................SHHHHHHHHHHHTT-SHHHHHHTT--X.. CS
     P16-Arc  94 ....sldkeeldvLmkYiYkgmespsekss....................................avLLsWhekvvevaGvgsIvrvltdrrtV 148
                     + ++ + d+LmkYiYkgm++ s+ s+                                    +vLLsWhek+ve+ Gvg I+rv++drrtV
  KKY19734.1 103 vvegEGGNARADTLMKYIYKGMATGSQPSQpngsarktssslspqatgfsqiqsrnigeggggqamSVLLSWHEKLVEIVGVGGIIRVMSDRRTV 197
                 887556699*************877766666779999*********************************************************8 PP

>> DUF1720  Domain of unknown function (DUF1720)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   3.6   8.9e-06      0.08       5      36 ..     125     158 ..     121     169 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.9e-06
     DUF1720   5 qtGfqppqqqqpqqq..qplqpqpTGfmpqqqtg 36 
                 +tG qp q+++ ++   + l pq+TGf + q+ +
  KKY19734.1 125 ATGSQPSQPNGSARKtsSSLSPQATGFSQIQSRN 158
                 4788888888887777888888888888877754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1396.16
//
Query:       KKY19735.1  [L=930]
Description: hypothetical protein UCRPC4_g04436 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.17   12.0   1.4        5.8    7.1   0.0    2.8  2  DUF4543   Domain of unknown function (DUF4543)


Domain annotation for each model (and alignments):
>> DUF4543  Domain of unknown function (DUF4543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.3    0.0083   1.5e+02      28      54 ..     418     444 ..     412     447 .. 0.87
   2 ?    7.1   0.0   0.00032       5.8      33      63 ..     544     574 ..     519     585 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.0083
     DUF4543  28 aGypdePmreyllylqrleqraeeqfl 54 
                 +Gy  e m e +  l +l   ++ q +
  KKY19735.1 418 SGYDHEYMDERMKDLNQLSSESRLQQF 444
                 79***************9998887665 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00032
     DUF4543  33 ePmreyllylqrleqraeeqflehWlnPhck 63 
                   ++e   ylq l+  a +++ e W n  c 
  KKY19735.1 544 SILKEQYSYLQGLDFTAVDEYHEVWSNESCP 574
                 4579999*********************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (930 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.49
# Mc/sec: 5725.38
//
Query:       KKY19736.1  [L=254]
Description: putative rab gtpase vps21 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-57  193.7   0.0    1.8e-57  193.4   0.0    1.1  1  Ras          Ras family
    3.1e-34  117.8   0.0      6e-34  116.8   0.0    1.4  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    4.6e-14   52.3   0.0    1.8e-13   50.3   0.0    1.7  2  Arf          ADP-ribosylation factor family
      1e-05   25.2   0.0    1.5e-05   24.6   0.0    1.4  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    2.7e-05   23.6   0.0    3.5e-05   23.3   0.0    1.2  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
    6.2e-05   23.1   0.0    0.00012   22.2   0.0    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.023   15.1   0.5      0.038   14.4   0.3    1.6  1  AAA_16       AAA ATPase domain
      0.023   14.6   0.1          2    8.3   0.0    2.5  2  RsgA_GTPase  RsgA GTPase
       0.17   12.1   0.0        1.1    9.5   0.0    2.2  2  AAA_22       AAA domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.4   0.0   9.2e-61   1.8e-57       1     160 [.      14     205 ..      14     207 .. 0.99

  Alignments for each domain:
  == domain 1  score: 193.4 bits;  conditional E-value: 9.2e-61
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 Klvl+G+ avGK+sl+lrfv+++F+e++e+Tig++f+t++i++ ++ +k+eiwDTAGqe+f sl+++yyr+a+++l+vyd+t+ +s++++k+wv e++r
  KKY19736.1  14 KLVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKISLPNRIIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTKPTSLTKAKHWVAELQR 112
                 99************************************************************************************************* PP

                 HSTTTSEEEEEEETTTGGG................................G-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDlee................................kravsteegeelakelglkfletSAktnenveeafeellrei 160
                 +a+  ++i+LvGnK Dl++                                 r++st+e++++a+e +l f+etSAkt +nv e+f++++++i
  KKY19736.1 113 QASPGIVIALVGNKLDLTNetttapsgataeddipaedaetegetegadasARKISTQEAKAYAEEESLLFFETSAKTGTNVAEVFTAIANSI 205
                 *****************************************************************************************9987 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8   0.0     3e-37     6e-34       1     120 []      14     129 ..      14     129 .. 0.88

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 3e-37
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K+vl+G+++vGK+sl+ rfv+++f+e++++tig+ flt++++ + +       + +k++iWDtaGqerf sl+p+y+r+a++a++vyd    +s +++k
  KKY19736.1  14 KLVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKIS-LPN-------RIIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDltkPTSLTKAK 104
                 99************************************9973.322.......4599*******************************64333457899 PP

                 HHHHHHHHHCSSS-EE.EEEE-TTT CS
         Roc  97 eWlkelkkvagkspvi.lvgnkiDl 120
                 +W+ el+++a+  +vi lvgnk+Dl
  KKY19736.1 105 HWVAELQRQASPGIVIaLVGNKLDL 129
                 ********9997655549*****95 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   9.2e-17   1.8e-13      12     132 ..      10     134 ..       4     145 .. 0.86
   2 ?   -0.6   0.0       0.4   7.9e+02     147     174 ..     177     204 ..     156     205 .. 0.72

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 9.2e-17
                 TTEEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEE..EEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHH CS
         Arf  12 kkelrilllGLDnaGKtTilkklkleelvt.tvPTigfn..veelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLk 105
                 + +++++llG  + GK+ ++ ++ ++++++   PTig    +++++   + +kf++wD  Gqe+  +l   Y+++ +a + v D ++ + l++ak+ ++
  KKY19736.1  10 SSSVKLVLLGEAAVGKSSLVLRFVNNDFQEnKEPTIGAAflTQKISLpnRIIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTKPTSLTKAKHWVA 108
                 5689*********************99987489***9661155555555779********************************************999 PP

                 HHCTSGCCTTSEEEEEEE-TTSTTSS- CS
         Arf 106 alleeeelkevallvlaNKqDlpeals 132
                 +l  ++    +++ +++NK Dl++  +
  KKY19736.1 109 ELQ-RQASPGIVIALVGNKLDLTNETT 134
                 975.566678888889******99776 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.4
                 SSSSEEEEEEBTTTTBTHHHHHHHHHHH CS
         Arf 147 gkrkleiqkcsavkgeglkeglewlses 174
                  +++l  +++sa +g+++ e ++ +++s
  KKY19736.1 177 EEESLLFFETSAKTGTNVAEVFTAIANS 204
                 46778899999****9999999998876 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   7.7e-09   1.5e-05      53     193 ..      46     206 ..      12     207 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 7.7e-09
                 TSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTE....EEEEEESCGST........HHHH CS
    GTP_EFTU  53 giTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqteevlrlalkegvp....iivfiNKmDrl........kael 139
                 g    ++ isl    +  ++ + Dt G + F +     +r +  a++v d ++       +++   l+++      i ++ NK+D +        +   
  KKY19736.1  46 GAAFLTQKISLP--NRIIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTKPTSLTKAKHWVAELQRQASpgivIALVGNKLDLTnetttapsG--- 139
                 445556677777..888999*********************************9999999999888887777674344455******854444441... PP

                 HHHHHHHHHHHHHH...................HHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 140 keiveevkqklsrk...................eeklekygekgekevpvvfgSalkgegvktllealvellp 193
                      ++++++ ++                   +++ ++y+e+  +   ++ +Sa++g +v +++ a+ + +p
  KKY19736.1 140 ----ATAEDDIPAEdaetegetegadasarkisTQEAKAYAEE--ESLLFFETSAKTGTNVAEVFTAIANSIP 206
                 ....444444433344455555666666666655555555555..4799*******************99887 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.8e-08   3.5e-05       1     148 [.      14     154 ..      14     205 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.8e-08
   Gtr1_RagA   1 kvLLmGksgsGKtsmr.siiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 k++L+G+   GK+s+  + + + ++ +   ++ga+  ++k ++  ++ +++++wD  Gqe+f        +   +rn ++ + V D +    +++l++ 
  KKY19736.1  14 KLVLLGEAAVGKSSLVlRFVNNDFQENKEPTIGAAFLTQKISL-PNRIIKFEIWDTAGQERFASL-----APMYYRNAQAALVVYDLT---KPTSLTKA 103
                 899***********86267778899999999999999999988.68999************9877.....478899***********9...56677777 PP

   Gtr1_RagA  99 keileal.rqyspeakvfvlihKmDliqedereeifeerkeeireeiekle 148
                 k+ + +l rq sp + +    +K+Dl +e + +    + +++i  e +++e
  KKY19736.1 104 KHWVAELqRQASPGIVIALVGNKLDLTNETTTAPSGATAEDDIPAEDAETE 154
                 77666652689****************999888777777777766655444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   5.9e-08   0.00012       2     103 ..      15     113 ..      14     126 .. 0.65

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 5.9e-08
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE.ETT.EEEEEEECGGCSSHHHHHH.HHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk.lkg.keielvDtpGliegaseek.glgkaflaleeadlillvvdas.eeklkpldee 96 
                  +++G   vGKS+L+ + +++  + +++p       + +++  ++  ++e++Dt+G  e    +  +l+  + +  +a+++l+v d++  ++l++ ++ 
  KKY19736.1  15 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKISlPNRiIKFEIWDTAG-QE----RFaSLAPMYYR--NAQAALVVYDLTkPTSLTKAKHW 106
                 6899****************9777777775555555555552233478********.44....33366666665..56677777776642346666666 PP

                 HHHHHHH CS
    MMR_HSR1  97 leellee 103
                 ++el+++
  KKY19736.1 107 VAELQRQ 113
                 6666543 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.3   1.9e-05     0.038      27     107 ..      15     132 ..       4     210 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.9e-05
      AAA_16  27 vllsGesGvGKsslv.rellralekd.....ggiflrgkcdqlesaipysalaqalareellrqllde.................aesaeleawrekle 102
                 ++l Ge++vGKsslv r + + ++++     g+ fl++k     + i +  +++++ + e ++ l+ +                 ++ +++ +w ++l+
  KKY19736.1  15 LVLLGEAAVGKSSLVlRFVNNDFQENkeptiGAAFLTQKISLPNRIIKF-EIWDTAGQ-ERFASLAPMyyrnaqaalvvydltkpTSLTKAKHWVAELQ 111
                 789************5555566666688898888888887777555444.23333322.3333333333332222222222222255555566666555 PP

      AAA_16 103 eala................a 107
                 ++++                +
  KKY19736.1 112 RQASpgivialvgnkldltnE 132
                 555555555555555555550 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0     0.001         2     102     125 ..      15      38 ..       9      48 .. 0.83
   2 ?    4.0   0.0     0.022        43      13      63 ..      82     134 ..      70     215 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.001
                  EEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelel 125
                   vl+G+  vGKS+L+ ++++++ +
   KKY19736.1  15 LVLLGEAAVGKSSLVLRFVNNDFQ 38 
                  699***********9888877554 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.022
                  EES--EEEEEEESTTTT--HHHHHHHHHHHHHT...T-EEEEEEE-GGG--HHH CS
  RsgA_GTPase  13 vaNvdqllivvslkepelslnlldrfLvlaeek...giepvivlnKiDlleeee 63 
                    N + +l+v  l+ + +sl   +  +++++++   gi + +v nK+Dl++e++
   KKY19736.1  82 YRNAQAALVVYDLT-KPTSLTKAKHWVAELQRQaspGIVIALVGNKLDLTNETT 134
                  56788888888888.555666666666665544111566677779****99988 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00057       1.1       8      56 ..      15     103 ..      13     136 .. 0.70
   2 ?   -0.3   0.0      0.58   1.2e+03      37      70 ..     174     211 ..     157     238 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00057
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee........................................erpevvfvtlpsstsskdl 56 
                 lv+ Ge+ +GK+ l+ r+++++ +e+k  +                                        +++ +v ++l+++ts+++ 
  KKY19736.1  15 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTigaafltqkislpnriikfeiwdtagqerfaslapmyyrnAQAALVVYDLTKPTSLTKA 103
                 6899*************999986655555478888888887666655555555555555555555555544444455555555555554 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.58
      AAA_22  37 e..erpevvfvtlpsst..sskdllrellralglelka 70 
                    e+ +++f++ +++t  + +++++++++ + +   +
  KKY19736.1 174 AyaEEESLLFFETSAKTgtNVAEVFTAIANSIPETSLK 211
                 13456677777777777779999999999988766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.52
# Mc/sec: 1462.96
//
Query:       KKY19737.1  [L=535]
Description: putative molybdenum cofactor sulfurase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-16   59.8   0.0    1.1e-13   50.9   0.0    3.1  2  Aminotran_5  Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   6.4e-18   1.1e-13       1     268 [.      38     343 ..      38     383 .. 0.69
   2 !    3.5   0.0    0.0015        28     341     369 ..     473     502 ..     452     504 .. 0.75

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 6.4e-18
                  EEEBTTTS----HHHHHHHHH.HHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-S.TGGGEEEESSHHHHHHHHHHHCCCC.-TTTSEEEEET CS
  Aminotran_5   1 iyldsaAttqkpqeVldalqe.yytdynanvhrsvhhlgkeatkaveearekvaelinae.seeeiiftsGtteainlvalslars.lkpgdeivvte 95 
                  iyld a+ t   +++l++ ++  +++  an+h++    +++ t+ ++++r+++ e+++a+ ++++i+f+ ++t ai+lv  ++ +  +       +  
   KKY19737.1  38 IYLDHAGATIPAKSTLTRFADdISSSIFANPHSASP-SSQRSTERIDAVRKRLLEFFHASpDDYDIVFVANATAAIKLVTEAFSDYgF----DCAYHI 130
                  8********9999999997651677889***98765.57789***************9962679*******************65444....444444 PP

                  TSHGGGTHHHHHHH.HHHTEEEEEE.EBETTSCBE.....GGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHH..T.T-EEEEE-TTTTTTS CS
  Aminotran_5  96 aehhanlvpwqela.krtgakvkvi.pldeegeld.....ldelekllnektklvaithvsnvtGtiqpveeigklakk..k.galvlvDaaqavghi 183
                    h + + +  +++  r+ ++v+ + p  ++ e++      ++ + +++  t+lva+ + sn+tG   p ++ +k+++   +   ++l+Daa+  +  
   KKY19737.1 131 DSHTSLVATSTKARtARCFYTVEDLdPWLQREEVEpdhpaGNTSNGNITGPTSLVAFPAQSNMTGYRPPYHSWIKHIRThaHhPTYILLDAAAFTMTG 228
                  444444433333321245677777744445555551122235678899*********************99999988763324789********9999 PP

                  ---HHH..HTESEEEEETTTTTSSTT-EEEEEEHHHHHTS......SS.STTSEEEEETTEEE........................EHCTTGGGS.S CS
  Aminotran_5 184 pidvkk..lgvDflafsghKllgPtGiGvlyvrkellekl....eplllggemveevsleett........................faeapskfeaG 251
                  ++++++  +  D++++s  K++g + iG l vrk+  + +       ++gg++v+ v  ++                          +++  +++e G
   KKY19737.1 229 QLELRDpsTSPDLISISLYKIFGFPDIGTLLVRKSSPHLFqifsSRKYFGGGTVDMVIPHSLPllpttlpsplqsilsspspwfrrnTRSYHTMLEDG 326
                  99998633678**********************97655442234445677777887766555445555556666666555555555555555555666 PP

                  S--HHHHHHHHHHHHHH CS
  Aminotran_5 252 Tpnvagiiglgaaleyl 268
                  T +  +i +++ al++ 
   KKY19737.1 327 TLPFHSITAVSHALDLH 343
                  66666666666666655 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0015
                  TTHHHHHHTT.S.-EEEEE--TTS-HHHHH CS
  Aminotran_5 341 caqplmkrlale.gtvRaSlyiynteeevd 369
                  c + + ++++ + g+vR+Sl+  +t eev 
   KKY19737.1 473 CGNGVDEIHGKPtGVVRISLGAMSTMEEVR 502
                  44333344444459**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 3478.02
//
Query:       KKY19738.1  [L=495]
Description: putative cellobiose dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-12   47.6   0.5    2.6e-12   46.8   0.5    1.3  1  CDH-cyt         Cytochrome domain of cellobiose dehydrogenase
    1.1e-09   38.5  16.0    2.1e-09   37.6  16.0    1.5  1  Cytochrom_B561  Eukaryotic cytochrome b561
    0.00045   20.0  13.3     0.0015   18.3   5.9    3.5  3  DUF2427         Domain of unknown function (DUF2427)
  ------ inclusion threshold ------
       0.01   16.0   0.0      0.021   15.0   0.0    1.5  1  DOMON           DOMON domain


Domain annotation for each model (and alignments):
>> CDH-cyt  Cytochrome domain of cellobiose dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.5   5.8e-16   2.6e-12      14     175 ..      31     204 ..      22     210 .. 0.69

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 5.8e-16
                 TT-SS-EEEEEEB-CCC...TS--SEEEEEEEEE-G.C.S--EEEEESSSSSCTSEEEEEEEE...TTEEEEEEEEBSSSSS-EE--SS-EEEEEE... CS
     CDH-cyt  14 tdeaggftfgialPeda...ttdatefigqlvapls.a.kagWaGislggsMtnnlLlvaWpn...gnevvtSfrlatgyasPevytgdakltqls... 101
                  ++a++++f +al + +   t + ++++   + + + + + gW+G+++g  M+++l+++++ +   ++  ++S r + g+ +P+v + + ++ ql+   
  KKY19738.1  31 CKSASDYNFCFALESYKnatTGELDAYMTF-QTTREtSsALGWVGVGFGNVMEGSLMFIMYGDpksKTGPTLSIRTTPGHNQPTVLE-AETIPQLHvad 127
                 456778888888887663355555555555.4444434459********************887567778****************4.44555555432 PP

                 .EEE-SSE.....EEEEEEEET-SEEEETTEEEE--TTTEEEEEEEEESS-.-B.STTSCCC.B-----SEEEEEEEE--CC CS
     CDH-cyt 102 gtsvnath.....ftltfrCqgClsweqggtsgsastssnlvlgwAqskka.pt.npaspds.tlsqHdngfgqfgadlsaa 175
                 ++++n        +t+ + C  C +    g  + +     +++ wA++ ++  + n a++   ++  H++gfg+f a++s+ 
  KKY19738.1 128 TSYANTKDspqniLTAHIICYSCEKRL--GRPEGQ---PFQSFIWAVNPTQdFDnNFADNVDlKMHSHESGFGNFYAEMSKS 204
                 556665432222266666777776662..222223...57889****988855546666666799999*********99983 PP

>> Cytochrom_B561  Eukaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6  16.0   4.8e-13   2.1e-09       1     135 [.     252     374 ..     252     376 .. 0.92

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 4.8e-13
                     HHHHHHHHHHTHHHHHHHTHHHHS-S...-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SS-SHHHHHHHHHHHHHHHHHHHHHHHHT CS
  Cytochrom_B561   1 lHpvlmviGfvllmgeaiLvyrvsstrklskktkkllHlilqllalilavvgllavfksknekeianlyslHswlGlvtvilfllqlvlGfvlfl 95 
                     +H +lm+i+f +l+  +i+v+r+            +lH+++q++a i a++g l+ +   +      +  +H ++G  +++ +l+q +lG    +
      KKY19738.1 252 VHGILMTISFYFLYPLGIIVMRGG------LPRAVRLHWVIQAIATITATTGSLIGIMLSR-----RFIRWHQYIGCFVLFAVLMQSLLGWRHHI 335
                     6*********************72......345789******************9998887.....5***********************99887 PP

                     SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cytochrom_B561  96 lpklskklralllplHvllGlvifvlaivtallGllekli 135
                        l++k ++ ++++Hv+lG +i++l+ + +++G++ k +
      KKY19738.1 336 -TYLRTKQKTWMSKIHVWLGHIILLLGWLELIMGMVLKHW 374
                     .8899999***************************88877 PP

>> DUF2427  Domain of unknown function (DUF2427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0085        38       4      25 ..     127     148 ..     124     151 .. 0.89
   2 !   18.3   5.9   3.3e-07    0.0015      15      99 ..     246     330 ..     237     336 .. 0.82
   3 ?    2.4   1.6     0.029   1.3e+02      36     103 ..     301     372 ..     300     374 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0085
     DUF2427   4 tttyfttdephksalwvHiilm 25 
                 +t+y++t+++ +++l++Hii+ 
  KKY19738.1 127 DTSYANTKDSPQNILTAHIICY 148
                 789*****************86 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 3.3e-07
     DUF2427  15 ksalw.vHiilmtlalvvvyPvalvL...slak.srwylpvqivnlvlavlglllghiykgstPelypnniyaklswillillavqvvla 99 
                 +s +w vH ilmt+++ ++yP++++    +l +  r++ ++q +++++a +g l+g++ + ++  +     ++ ++ ++l+ +++q +l+
  KKY19738.1 246 RSQMWaVHGILMTISFYFLYPLGIIVmrgGLPRaVRLHWVIQAIATITATTGSLIGIMLSRRFIRW-----HQYIGCFVLFAVLMQSLLG 330
                 4444428****************9873333344589************************999555.....9999999999999998776 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.029
     DUF2427  36 alvLslaksrwy....lpvqivnlvlavlglllghiykgstPelypnniyaklswillillavqvvlavllk 103
                 +++Ls    rw+      v+++ l+  +lg+   ++y  ++       i+  l+ i+l+l  + ++++++lk
  KKY19738.1 301 GIMLSRRFIRWHqyigCFVLFAVLMQSLLGWRHHITYLRTKQKTWMSKIHVWLGHIILLLGWLELIMGMVLK 372
                 677777666776322234677778888999999999999887755999******************999986 PP

>> DOMON  DOMON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   4.7e-06     0.021      17      74 ..      57     115 ..      49     136 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.7e-06
       DOMON  17 eiefelsgkvnt.ngyvaiGfsddgkMsnadvvvgwvd.n.grvyvqdyystggkgaprid 74 
                 +++f+ ++++    g+v++Gf++   M ++ + +++ d +  ++ + +  +t+g+++p++ 
  KKY19738.1  57 YMTFQTTRETSSaLGWVGVGFGNV--MEGSLMFIMYGDpKsKTGPTLSIRTTPGHNQPTVL 115
                 6899999999956*********98..**********9954666666666688888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 2955.30
//
Query:       KKY19739.1  [L=432]
Description: putative pantothenate kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.2e-143  476.9   0.5   4.3e-143  476.5   0.5    1.2  1  Fumble    Fumble


Domain annotation for each model (and alignments):
>> Fumble  Fumble
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  476.5   0.5  2.4e-147  4.3e-143       1     330 []      54     388 ..      54     388 .. 0.95

  Alignments for each domain:
  == domain 1  score: 476.5 bits;  conditional E-value: 2.4e-147
      Fumble   1 hiavDiGgsLaKlvYfsrkkkksaaekekeeeveeeeeseelggrLhfikfetekieevleflkelllkskekekkkk...tikaTGGGaykyaelike 96 
                 h+avDiGgsLaKlvYfsr                 e  s + ggrL+f++fet++i+ +++f+ +l +k+ + + ++    +++aTGGGayk+++++ke
  KKY19739.1  54 HVAVDIGGSLAKLVYFSR-----------------EPGSLQGGGRLNFLSFETDRIDLCIDFILQLKQKQLKLNGSNPhelCVMATGGGAYKFYDKMKE 135
                 79****************.................334567899*******************999888777755554788****************** PP

      Fumble  97 elgvevekedemeclikGlkfllteipkevftyseekpkkavekkeseeiyPylLvniGSGvsilkvegeekfervgGtslgGgtfwGLlslLtgaksf 195
                  lgv++ +edemecli Gl+f++teip+evftyse++p+ +ve+  + ++yPylLvniGSGvs++kv+g+++f+rvgGtslgGgtfwG+lslLtga++f
  KKY19739.1 136 ILGVDILREDEMECLIIGLDFFITEIPNEVFTYSETDPMAFVEA--RPDVYPYLLVNIGSGVSMIKVSGPKQFQRVGGTSLGGGTFWGILSLLTGARTF 232
                 **********************************8679999988..999************************************************** PP

      Fumble 196 dellelaekGdnskvDmlvgDiyGedyekiglksdliassfgkvfkkkkkkeeeek.....................eDiarslLyaisnnigqiaylq 273
                 de+l++ae+Gdns vDmlvgDiyG  y+kiglks++ias+fgkvfk+k+++e++ +                     eD++rslL+aisnnigqiaylq
  KKY19739.1 233 DEMLAMAENGDNSGVDMLVGDIYGAGYGKIGLKSTTIASTFGKVFKTKRTAERNAEdgsglhngdsedgeevgnfkvEDMSRSLLFAISNNIGQIAYLQ 331
                 **********************************************99877776669****************************************** PP

      Fumble 274 aklhnlkriyFgGsfirgheqtmktlsyaikfwskgelkalFlrHegylGavGaflk 330
                 +++h+lk+iyFgGsfirgh+qtm+tlsyaikfws+ge++a+FlrHegylG+vGaflk
  KKY19739.1 332 SEKHQLKHIYFGGSFIRGHPQTMNTLSYAIKFWSQGEKQAYFLRHEGYLGSVGAFLK 388
                 *******************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 2623.29
//
Query:       KKY19740.1  [L=1054]
Description: hypothetical protein UCRPC4_g04441 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1054 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.85u 0.36s 00:00:01.21 Elapsed: 00:00:00.54
# Mc/sec: 5857.31
//
Query:       KKY19741.1  [L=1356]
Description: hypothetical protein UCRPC4_g04442 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.77   10.0   5.9        2.1    8.6   3.3    2.5  2  CTK3_C    CTD kinase subunit gamma CTK3 C-terminus


Domain annotation for each model (and alignments):
>> CTK3_C  CTD kinase subunit gamma CTK3 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.3   0.00011       2.1       4      22 ..     349     367 ..     347     368 .. 0.90
   2 ?    0.4   0.0      0.04   7.2e+02      37      55 ..    1029    1047 ..     993    1059 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00011
      CTK3_C   4 qilkRiEeDRErhKRlrEn 22 
                 +i kR+Ee+RE+  R+ E+
  KKY19741.1 349 DIYKRMEEEREKQRRQSEE 367
                 799************9886 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.04
      CTK3_C   37 eaEfenlWeetsdlnedde 55  
                   +E++ +W+e++d   +d 
  KKY19741.1 1029 PKEYDSYWNEAKDEVHEDA 1047
                  589*******998555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.50
# Mc/sec: 8181.27
//
Query:       KKY19742.1  [L=484]
Description: putative cysteine synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-29  102.9   0.0    3.3e-29  102.2   0.0    1.2  1  PALP       Pyridoxal-phosphate dependent enzyme
    2.1e-07   31.4   0.0    6.1e-07   29.9   0.0    1.7  1  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   0.0   3.7e-33   3.3e-29      33     275 ..       6     238 ..       2     251 .. 0.89

  Alignments for each domain:
  == domain 1  score: 102.2 bits;  conditional E-value: 3.7e-33
                 TTSBTTHHHHHHHHHH.HHTTTTTSEEEEEBSSHHHHHHHHHHHHH.T-.EEEEEEETTS-HHHHHHHHHTT-EEEEE.......CCHHHHHHHHHHHH CS
        PALP  33 ptgSfKdRgaeyllar.lkegtgaktvveassGNhgralAaaaall.Gl.kvtivvpadaspekvallrllGaevvev.......ggdydeavaaaael 121
                 p   +K++ a +ll++  ++g ++ktv+e ssG + +++++++++  G+ + + ++++++s +k++l++ +G +++++       + d     +aa++ 
  KKY19742.1   6 PANNVKALPALNLLSEsVAPG-KTKTVIEYSSGSTVISMSLVSRVVhGItDIRAFLSNKTSDAKLKLMQFFGLDLTLFggpsqpdPMDNRGGIQAARKQ 103
                 77789***********99999.**********************999*99****************************665543322244555557877 PP

                 HHHSTTCEE--TTTSHHHHHH.HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTCCS..S.SS..B.SSS.CC CS
        PALP 122 aaegegaylvsqfdnptvieg.ygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalarslragrrvtvpvsdtiadg 219
                 aae+e +++ +q++n++++ + ++++g++i++ql + + ++ +++G+ g+++Gi+ ++ke++++v  igv ++  d + + +                +
  KKY19742.1 104 AAESEQVVNPNQYENEANWNAhMKWTGPQIHRQL-PHIGVICAGMGTSGTMTGIGLYFKEKKSSVVRIGVCTSPGDRVPGPR----------------S 185
                 7778******************************.6**********************************************................8 PP

                 STCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH.H CS
        PALP 220 lavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal.k 275
                  a  sp ++ ++   + vd + +v + e +    +l  reg++++pss+ +l++l +
  KKY19742.1 186 YALMSPVTFPWR---DAVDHMEQVGSTESYGLSLQLS-REGLICGPSSGFNLQGLyQ 238
                 888888999995...5588888***************.****************963 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   6.8e-11   6.1e-07      13     105 ..     340     448 ..     334     449 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 6.8e-11
   Rhodanese  13 kvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellel...............gidn..kktvvvycdgggraaaaaallkklGyknv 94 
                 ++a+lD R+ ++Y+ +h pg+vnv+++++++ +ks+ ++ + +e+  ++               g+d    k++ ++c +g++++ a+ +l++ G  + 
  KKY19742.1 340 AIAVLDLRSHQDYQSWHMPGSVNVPFESITTISKSPFFDSKVLEQQWREmesffasqirqctidGVDSllPKKIQLICYNGDSSRVATSILRAKG-VEA 437
                 4559********************9999999999999888887776666698999867777555444488999**********888899***9**.89* PP

   Rhodanese  95 svldGGfkawk 105
                 s + GG+ + k
  KKY19742.1 438 SSIAGGIANVK 448
                 ******98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 3110.15
//
Query:       KKY19743.1  [L=480]
Description: putative mfs drug transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-32  110.4  32.1    5.5e-30  104.5  33.8    2.6  2  MFS_1     Major Facilitator Superfamily
    1.6e-09   36.7  24.1      3e-09   35.9  24.2    1.3  1  TRI12     Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
       0.07   11.4   0.0       0.18   10.1   0.0    1.6  2  Gp58      gp58-like protein
        5.2    7.0   9.8        1.5    8.7   1.1    3.6  3  DUF5337   Family of unknown function (DUF5337)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5  33.8   1.2e-33   5.5e-30      86     352 ..      36     353 ..      25     354 .. 0.90
   2 ?    1.3   0.0     0.028   1.3e+02     145     171 ..     411     437 ..     403     469 .. 0.73

  Alignments for each domain:
  == domain 1  score: 104.5 bits;  conditional E-value: 1.2e-33
       MFS_1  86 wlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg..Wravfyilaivsllafvlfllllpeepperkrk 182
                 + l+++r+++G+g+g+l+++++ +++d++p +erg++ g+l+a+++lG  +gp++gg+l+s+ +  Wr++f ++ ++s+++++++++++p +++e  +k
  KKY19743.1  36 TQLIAFRAVTGVGGGGLMTVAQMIVSDVVPLRERGKYQGILGAFVALGNGVGPVIGGALSSLSSdsWRWIFRLNMPMSVIMVICVIFFMPLRKVEGDWK 134
                 369*********************************************************777799********************************* PP

       MFS_1 183 spkeee...................................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltll 230
                 ++ +                                                      +    plvp   ++++++v+  + i+++++++ f    +++
  KKY19743.1 135 TKFQGVdffgaflalagssvlvlgltwaggqydwdsahvivtfsvgilvfisffiwqWKGTVIPLVP--LHIFRSKVVNGASITMFINGWNFVVQIYYI 231
                 **9999***************************************9999999999755555555555..6777777675588888888779999***** PP

       MFS_1 231 plylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt.ssavllllvlvliGfglgfvfpsllalasdl 328
                 p++ q v+g+s +  a++ll  + ++  +++ ++g +++ +gr r ++l + ++ ++ lgl+ + +  s     + + +l Gfg+g +  ++l++++  
  KKY19743.1 232 PTFYQLVYGYS-ATKAATLLLPITVIQTFSSTFSGLIVTWTGRYRENILVGWAAWAVGLGLFSTLNEnSGLGKQIGFAILTGFGVGQTLQPSLVAIQAG 329
                 **99*******.799999999999999999*************9999999999999999998888883444445557777999**************** PP

       MFS_1 329 appeeagtasglfntagslggalg 352
                 + ++ ++ ++++ n++++lg+ +g
  KKY19743.1 330 VERRDMAVVTSWRNFIRNLGATIG 353
                 *********************998 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.028
       MFS_1 145 asslgWravfyilaivsllafvlflll 171
                 a s ++  +fyi+a+++++af  +l l
  KKY19743.1 411 AYSTSFKMLFYINAGLAAFAFCTALGL 437
                 457789999999999999997633333 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9  24.2   6.6e-13     3e-09     134     450 ..      38     346 ..      30     442 .. 0.75

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 6.6e-13
       TRI12 134 llaamtllgvaagp.agasplfvgelm..snktkflgllivsipvvvtsglspylgqrlai..qgswrwifyiyiitsaiavllivvwyyppsfaqlhg 227
                 l+a  ++ gv  g     + ++v +++   ++ k+ g+l   + v   +g++p +g  l+     swrwif + + +s i v+  v+++ p  ++++ g
  KKY19743.1  38 LIAFRAVTGVGGGGlMTVAQMIVSDVVplRERGKYQGIL--GAFVALGNGVGPVIGGALSSlsSDSWRWIFRLNMPMSVIMVIC-VIFFMP--LRKVEG 131
                 555556666665541445566777765225677888876..56677899*********98622568************998865.455665..688888 PP

       TRI12 228 kkvrkreelakldwigiilvivgvslfllgvswggkpnspwnsakviglissglgslvvfalyevygkpvrpivppalfkdtrgfvcillissimgamn 326
                    +k   +  +d+ g +l  +g s+++lg++w g     w+sa+vi  +s g+  ++ f +++  g  v p+vp  +f+    +v    i+  +   n
  KKY19743.1 132 DWKTK---FQGVDFFGAFLALAGSSVLVLGLTWAGGQ-YDWDSAHVIVTFSVGILVFISFFIWQWKG-TVIPLVPLHIFRSK--VVNGASITMFINGWN 223
                 76655...6689*********************9864.57*******99999988888888887666.688********864..455555666667778 PP

       TRI12 327 lslviiy.pqqvvnifgssl.knweetawmsatasfg.tgagvvvlgslfhlvrhirwqilvgalwltaflgamssvnrdnk.naaialsvlsgfvvaw 421
                 + + i y p     ++g s  k       ++   +f  t++     g ++      r +ilvg    +  lg +s++n +      i +++l+gf v+ 
  KKY19743.1 224 FVVQIYYiPTFYQLVYGYSAtKAATLLLPITVIQTFSsTFS-----GLIVTWTGRYRENILVGWAAWAVGLGLFSTLNENSGlGKQIGFAILTGFGVGQ 317
                 88888774555556788665144444444555555641344.....44555677889******7777788********88752678************9 PP

       TRI12 422 aqditmllvqfittdedlgvafavvaaar 450
                 + + +++ +q      d+ v  +     r
  KKY19743.1 318 TLQPSLVAIQAGVERRDMAVVTSWRNFIR 346
                 98888888888777777766655544444 PP

>> Gp58  gp58-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0     4e-05      0.18     466     541 ..       2      75 ..       1      81 [. 0.83
   2 ?   -1.9   0.0      0.17   7.7e+02     176     223 ..     314     361 ..     312     406 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 4e-05
        Gp58 466 idLnsakldfnsdatinfnskenalvrkds.statafvkfsnataksyegsalaasivitsssdgidsaesgrfaGi 541
                  d+++a  + n+++ti fn++ + l+r+   +tat+ + f  +t ++  g + +a + ++   d +   e g++ Gi
  KKY19743.1   2 SDVENAGEQKNAETTIAFNEQTKYLTRRRIiTTATQLIAFRAVTGVGGGGLMTVAQMIVS---DVVPLRERGKYQGI 75 
                 5889999899*************999887616799***************9999999885...56666666666665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.17
        Gp58 176 GlkatlasdklglkaeiqasaqgLsqkyddeirkLsakitttssGtte 223
                 G+ +tl+   + ++a ++     +   + + ir+L a i     Gt+ 
  KKY19743.1 314 GVGQTLQPSLVAIQAGVERRDMAVVTSWRNFIRNLGATIGLAVAGTIM 361
                 677888888999999999999999999999999999999999999984 PP

>> DUF5337  Family of unknown function (DUF5337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.1   0.00034       1.5      18      41 ..     147     170 ..     145     190 .. 0.88
   2 ?   -1.2   0.6      0.41   1.8e+03      14      53 ..     245     286 ..     242     290 .. 0.76
   3 ?    1.9   0.0     0.045     2e+02      39      58 ..     412     432 ..     393     450 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00034
     DUF5337  18 lviavtmllwlgaqwigeqlglsn 41 
                 l++a++ +l lg++w+g+q+++ +
  KKY19743.1 147 LALAGSSVLVLGLTWAGGQYDWDS 170
                 689*******************65 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.41
     DUF5337  14 rlvalviavtmllwlgaqwigeqlglsnRya..lLfdLaAlA 53 
                 + ++l + +t++     ++ g  + +++Ry+  +L+  aA A
  KKY19743.1 245 KAATLLLPITVIQTFSSTFSGLIVTWTGRYRenILVGWAAWA 286
                 566777888888888889999999999999644677777755 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.045
     DUF5337  39 lsnRyalLfdLaA.lAaliwa 58 
                  s+ + +Lf++ A lAa+++ 
  KKY19743.1 412 YSTSFKMLFYINAgLAAFAFC 432
                 477899999996669*99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.50
# Mc/sec: 2881.41
//
Query:       KKY19744.1  [L=211]
Description: putative fumarylacetoacetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-38  131.4   0.0    4.1e-38  131.2   0.0    1.0  1  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.2   0.0   2.3e-42   4.1e-38       3     136 ..       8     184 ..       6     206 .. 0.87

  Alignments for each domain:
  == domain 1  score: 131.2 bits;  conditional E-value: 2.3e-42
                    EEEEEE--SHHHHHTTT.......-SS-EEEEEEGGGE.EETTE..EE-TTSSSS-EE.......................EEEEEEEESS..-B- CS
  FAA_hydrolase   3 vcdglnyaehvreagka......aeeppdrhiplepvfflkrasslvgpgdpirrPag.................sekldyEvELavvigk..plr 73 
                    ++d+++  +h+ ++g +      a +p++++ p+   ++++rass+v +g+pirrPag                 ++kld+E+ELa++i +  +l+
     KKY19744.1   8 YTDFYAGLNHAFNVGVLfrgpdnALQPNYKNLPV---AYHGRASSVVISGTPIRRPAGqlltdptavlkkpvhlpCKKLDFELELAAFIATgnDLG 100
                    799***********98899999988999977777...****************************************************9999*** PP

                    -T--HHHHHTTEEEEEEEEEEE-SBGGG---.HHHHHHTGGGEEEEEE-B--B-.STT---S.......................S CS
  FAA_hydrolase  74 evlsveeAedaiaGytllnDvsaRdlqaeekaplgwflgksfdtftpiGpwivtpdeledpe.......................d 136
                    e++s ++A++ ++Gy+l+nD+saRd+qa+e++plg+f++k+f   t+i+pw+v pd+l++++                       d
     KKY19744.1 101 EPISTKNASESVFGYVLMNDWSARDIQAWEYVPLGPFNSKNF--GTTISPWVVLPDALAPFKtaglhndvdilaylkedssetvyD 184
                    ******************************************..****************88555656444444444444444442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1406.94
//
Query:       KKY19745.1  [L=354]
Description: putative er-golgi snare complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-11   42.1   0.6    1.1e-10   40.5   0.6    2.0  1  Syntaxin-5_N   Syntaxin-5 N-terminal, Sly1p-binding domain
    1.2e-09   38.1   0.2    1.2e-09   38.1   0.2    1.9  2  SNARE          SNARE domain
     0.0011   19.3   0.6        1.9    8.8   0.1    3.0  3  KxDL           Uncharacterized conserved protein
     0.0016   18.1   6.3     0.0042   16.8   0.0    3.0  3  Syntaxin       Syntaxin
  ------ inclusion threshold ------
      0.055   13.7   1.5        0.3   11.3   0.2    2.6  2  Syntaxin-18_N  SNARE-complex protein Syntaxin-18 N-terminus
      0.061   13.8   6.7        1.1    9.8   0.2    3.6  4  NPV_P10        Nucleopolyhedrovirus P10 protein
       0.27    9.1   1.2        4.9    5.0   0.7    2.2  2  Prominin       Prominin
       0.28   11.9  10.7        1.3    9.7   0.2    3.8  4  LTXXQ          LTXXQ motif family protein
       0.89    9.7   9.6        5.2    7.2   0.1    3.2  3  Fib_alpha      Fibrinogen alpha/beta chain family


Domain annotation for each model (and alignments):
>> Syntaxin-5_N  Syntaxin-5 N-terminal, Sly1p-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.6   5.4e-14   1.1e-10       2      22 ..       2      22 ..       1      23 [. 0.94

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 5.4e-14
  Syntaxin-5_N  2 apmSirDRTsEFqSivkslQk 22
                  +++Si+DRT+EF+Si++++Qk
    KKY19745.1  2 VTTSIQDRTNEFRSILTQAQK 22
                  79******************9 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2         4   7.9e+03      21      34 ..      14      27 ..       6      28 .. 0.72
   2 !   38.1   0.2   5.8e-13   1.2e-09       1      47 [.     288     334 ..     288     335 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4
                HHHHHHHHHHHCTX CS
       SNARE 21 qkeLkkavkyqksn 34
                ++ L +a k+q s+
  KKY19745.1 14 RSILTQAQKKQASS 27
                67789999999876 PP

  == domain 2  score: 38.1 bits;  conditional E-value: 5.8e-13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXX CS
       SNARE   1 emvDrIdtnVenaqsnveraqkeLkkavkyqksnRklkciillilvi 47 
                 em++rId+n e++++nv++aq+eL k+  + + nR+l  + +++l +
  KKY19745.1 288 EMIQRIDANTEDVVDNVQGAQRELLKYWSRVQGNRWLVAKMFGVLMV 334
                 8*****************************************99986 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1   0.00093       1.9      52      84 ..      96     128 ..      61     129 .. 0.77
   2 ?   -2.9   0.0       4.2   8.4e+03      48      59 ..     158     165 ..     143     185 .. 0.52
   3 !    7.5   0.0    0.0025       4.9      10      55 ..     278     323 ..     277     332 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00093
        KxDL  52 qgtkllkevkkdLesifkkirslkaklakkyPe 84 
                 +  +l   +k+dL s+++++++l+  +++++P 
  KKY19745.1  96 EISELTYIIKQDLASLNSQVSQLQILTQSQHPS 128
                 556777889***********************7 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.2
        KxDL  48 arfkqgtkllke 59 
                 a+fk+    + e
  KKY19745.1 158 ANFKD----VLE 165
                 33332....222 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0025
        KxDL  10 dldeilalQaqtsgrlnkknreLlelnalsqerlaklrarfkqgtk 55 
                 +l ++++ Q+++ +r+ + ++ + +  + +q++l k+ +r++ +  
  KKY19745.1 278 QLASMVSEQSEMIQRIDANTEDVVDNVQGAQRELLKYWSRVQGNRW 323
                 68899****************************9999888887765 PP

>> Syntaxin  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3      0.44   8.9e+02      28      41 ..      23      36 ..       3      93 .. 0.49
   2 ?    2.8   0.9     0.041        82      51     116 ..     104     169 ..      57     186 .. 0.63
   3 !   16.8   0.0   2.1e-06    0.0042     168     199 ..     255     286 ..     241     287 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.44
    Syntaxin 28 qneesktstraksv 41
                ++ +sk   ++ s+
  KKY19745.1 23 KQASSKVGAQRTSL 36
                33333333333332 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.041
    Syntaxin  51 ikeikkraesvkarLeaLdksnkenekksgegsavdRirksqtaaLrkklkevmteynelrekire 116
                 ik+   + +s  ++L+ L +s++ + ++++++  +   +k ++ +L+ k  +v  +++++ e  ++
  KKY19745.1 104 IKQDLASLNSQVSQLQILTQSQHPSASQPKSADQEGQHNKNVVVMLQGKVADVAANFKDVLEVRTK 169
                 333333333334556666666666666667777777888888888888888888888887665554 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 2.1e-06
    Syntaxin 168 ieeRhkevlelekslkeLhqlFldmavLVEeQ 199
                 i++R +++  +e+ + eL  +F ++a +V eQ
  KKY19745.1 255 IQQRGEAIEAIERTISELGGIFGQLASMVSEQ 286
                 9******************************9 PP

>> Syntaxin-18_N  SNARE-complex protein Syntaxin-18 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00015       0.3       2      55 ..       8      70 ..       7      73 .. 0.65
   2 ?    0.3   0.1      0.43   8.6e+02       3      15 ..     177     189 ..     154     220 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
  Syntaxin-18_N  2 DiTplFkasVktvk.........asssskseekeakkrkkkrlkkskekdeFikeAkeilkhI 55
                   D+T++F++++ + +         a++ s  ++ ++++ + ++   +++++eF + A +i + I
     KKY19745.1  8 DRTNEFRSILTQAQkkqasskvgAQRTSLLSDAQRRQANGSPVGTRQARSEFARNAVQIGRGI 70
                   9************88887764321333333333333344445556678889999999886666 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.43
  Syntaxin-18_N   3 iTplFkasVktvk 15 
                    +T+ F +sV++ +
     KKY19745.1 177 RTENFVSSVSARS 189
                    5666666666654 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       7.3   1.5e+04      54      66 ..       6      18 ..       4      30 .. 0.64
   2 ?    3.4   0.1     0.056   1.1e+02       8      24 ..     103     119 ..      97     131 .. 0.81
   3 ?    9.8   0.2   0.00054       1.1      20      43 ..     146     169 ..     140     188 .. 0.82
   4 ?    2.2   0.1      0.13   2.5e+02      11      51 ..     260     300 ..     253     311 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 7.3
     NPV_P10 54 letkvenIqdiLn 66
                +++  ++  +iL+
  KKY19745.1  6 IQDRTNEFRSILT 18
                5555666666666 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.056
     NPV_P10   8 vIradikavddkVdalq 24 
                  I++d + ++++V+ lq
  KKY19745.1 103 IIKQDLASLNSQVSQLQ 119
                 58899999999999888 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00054
     NPV_P10  20 Vdalqqqvddvqenlpdvtelnek 43 
                 V  lq +v+dv++n++dv e+ +k
  KKY19745.1 146 VVMLQGKVADVAANFKDVLEVRTK 169
                 789***************999876 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.13
     NPV_P10  11 adikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqL 51 
                 ++i+a++  ++ l     ++++ + + +e+ +++da ++ +
  KKY19745.1 260 EAIEAIERTISELGGIFGQLASMVSEQSEMIQRIDANTEDV 300
                 57888888888888888888888888888888888887654 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.7    0.0025       4.9     561     643 ..      93     174 ..      81     210 .. 0.77
   2 ?    2.5   0.0     0.014        28     357     421 ..     265     328 ..     251     340 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0025
    Prominin 561 ellnikklteeiqkelenlkvdlsnlelLteeerkdLeklresglskihsslyleqlckkltkvnletlaekleelanelsng 643
                 + ++i++lt  i+++l++l+ ++s+l++Lt++++ +  + ++++ +  h ++++  l+ k+++v   ++++ le   ++++ +
  KKY19745.1  93 KPVEISELTYIIKQDLASLNSQVSQLQILTQSQHPSASQPKSADQEGQHNKNVVVMLQGKVADVAA-NFKDVLEVRTKNIQAS 174
                 567899999999999999999999999999999999999999998899999999999888888765.7777777777777555 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.014
    Prominin 357 taevvpdlkkalakgreqikklakkiprealdavisdlenterssktfddvvekyekyrwligli 421
                 +++++++l     +  +++++++++i +++  ++ + ++n++   ++ ++++ +++ +rwl+  +
  KKY19745.1 265 IERTISELGGIFGQLASMVSEQSEMI-QRIDANTEDVVDNVQGAQRELLKYWSRVQGNRWLVAKM 328
                 34444444444455556666666666.44444444444477777788888888888888877655 PP

>> LTXXQ  LTXXQ motif family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.2   0.00068       1.3      80     101 ..       5      26 ..       2      29 .. 0.87
   2 ?    0.2   0.1      0.63   1.3e+03      91     101 ..      36      46 ..      31      90 .. 0.68
   3 ?    6.4   0.3    0.0071        14      13      90 ..     108     183 ..     103     188 .. 0.63
   4 ?   -1.0   0.1       1.5     3e+03      69      98 ..     281     310 ..     277     313 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00068
                 HHHHHHHHHHHTS-HHHHHHHH CS
       LTXXQ  80 kraealkqfyavLtpEQkakld 101
                 + ++ +++f+++Lt  Qk++++
  KKY19745.1   5 SIQDRTNEFRSILTQAQKKQAS 26 
                 568899**************97 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.63
                 TS-HHHHHHHH CS
       LTXXQ  91 vLtpEQkakld 101
                 +L++ Q+++++
  KKY19745.1  36 LLSDAQRRQAN 46 
                 56666666654 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0071
                 ----HHHHHHHHHHHHHHHHHS---..-HHHHHHHHHHH....TSSS--HHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHH CS
       LTXXQ  13 LkLtdaQkaalkalaeaaraeakplkakkeemramrkkv....laanfdetaperlarmeamlearleavkkraealkqfya 90 
                 L    +Q  +l+ l++++++ a++ k + +e +  ++k     l+ ++++ a+      +  le r+++ ++++  +++f +
  KKY19745.1 108 LASLNSQVSQLQILTQSQHPSASQPKSADQEGQ--HNKNvvvmLQGKVADVAA----NFKDVLEVRTKNIQASRSRTENFVS 183
                 55556899************9999944444444..444413443333333333....3356777777777777777777765 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHHHHHHHHHTS-HHHHH CS
       LTXXQ  69 amlearleavkkraealkqfyavLtpEQka 98 
                  m++++ e+ ++ ++ ++++ +     Q++
  KKY19745.1 281 SMVSEQSEMIQRIDANTEDVVDNVQGAQRE 310
                 688888888888888888888877777776 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0026       5.2      31     112 ..       4      85 ..       1      89 [. 0.89
   2 ?    2.5   2.7     0.079   1.6e+02      33     114 ..     104     181 ..      87     189 .. 0.69
   3 ?    2.9   0.1     0.057   1.1e+02      89     124 ..     261     296 ..     223     313 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0026
                 CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHH CS
   Fib_alpha  31 kdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvle 112
                 ++++++ ++ ++ l+++++++ +++   ++++    ++ ++++++   +++ ++e  ++ +++ + i+a++ +++ L ++ +
  KKY19745.1   4 TSIQDRTNEFRSILTQAQKKQASSKVGAQRTSLLSDAQRRQANGSPVGTRQARSEFARNAVQIGRGITATMGKLERLAQLAR 85 
                 678899999***********9999999999999999999999989999**********************999999987665 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.079
                 CCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHH CS
   Fib_alpha  33 vkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesn 114
                 +k+dl++l++++++++  t++ +   ++ k+      ++ ++n+nv+  ++ ++ +  +++k+ +    +ni++ ++  e+ 
  KKY19745.1 104 IKQDLASLNSQVSQLQILTQSQHPSASQPKSA----DQEGQHNKNVVVMLQGKVADVAANFKDVLEVRTKNIQASRSRTENF 181
                 56666677777777776666666655554443....2223336778888888888788888888888889999888777765 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.057
                 CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  89 eilrlketidaqesnirvLqnvlesneqkiqkLeqd 124
                  i+ +++ti++      +L ++++++++ iq++  +
  KKY19745.1 261 AIEAIERTISELGGIFGQLASMVSEQSEMIQRIDAN 296
                 445777777777777778888888888888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       934  (0.0520944); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 2350.56
//
Query:       KKY19746.1  [L=369]
Description: putative phosphopantothenate-cysteine ligase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-16   60.3   0.0    3.4e-08   33.6   0.0    2.2  2  DFP       DNA / pantothenate metabolism flavoprotein


Domain annotation for each model (and alignments):
>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.1e-09     2e-05       4      55 ..      42      95 ..      40     122 .. 0.85
   2 !   33.6   0.0   1.9e-12   3.4e-08      77     172 ..     179     284 ..     156     299 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.1e-09
                -EEEEEES-EEEECCT..TEEEEE----HHHHHHHHHHHHTT-EEEEEE-S-SS CS
         DFP  4 kkvlvtaGpTrEaiDp..VRfisNrSSGkmGyalAeaaaarGaeVtlvsgpvsl 55
                k vl+t+G+T  ++ +  VRfi N S G+ G++ Ae ++++G  V + + + sl
  KKY19746.1 42 KLVLITSGGTTVPLENqtVRFIDNFSAGTRGATSAEYFLREGYAVIFMHRQYSL 95
                679***********7444****************************99988654 PP

  == domain 2  score: 33.6 bits;  conditional E-value: 1.9e-12
                 HHHHTT-SEEEE---S--EEE..S----------.....---..----EEE---HHHHHHHC-S.S.-EEEEEEE-SS..-HHHHHHHHHHHTT-SEEE CS
         DFP  77 eealkeadivimaAAvaDyrp..keaaeeKikke.....eeeeeltleleknpdilaelaekkkkk.qllvGFaaete..ellenareklerkgldliv 165
                 ++ l +  ++  aAAv+D+ +  ++ +e+Ki+ +      ++++l ++l + p+ l+ l ++ +++ +l+v F++et+   l+++a++ le+ g +l++
  KKY19746.1 179 MKPLGSRAVFYLAAAVSDFFIprDRMEEHKIQSSditgsGKGKQLRIDLDPVPKFLSPLVNNWAPSgSLIVSFKLETDpnLLVSKAEQALEKYGHNLVI 277
                 44456778999*******9875666788999876454446788999************97666655369********5558899*************** PP

                 EEEGGGT CS
         DFP 166 aNdvske 172
                  N ++++
  KKY19746.1 278 GNLLTTR 284
                 **99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.53
# Mc/sec: 2095.68
//
Query:       KKY19747.1  [L=252]
Description: putative ibr domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1572  (0.0876792); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 1661.51
//
Query:       KKY19748.1  [L=612]
Description: putative extracelular serine [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-46  156.4   0.0    3.3e-44  151.4   0.0    2.1  1  Peptidase_S28  Serine carboxypeptidase S28


Domain annotation for each model (and alignments):
>> Peptidase_S28  Serine carboxypeptidase S28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.4   0.0   1.8e-48   3.3e-44       7     390 ..      72     483 ..      61     491 .. 0.73

  Alignments for each domain:
  == domain 1  score: 151.4 bits;  conditional E-value: 1.8e-48
  Peptidase_S28   7 dasnkrtfqqryfvndqfyknggpiflyiGgegsl..saswvsngeilklAkefgAlvlslEHRfYGqSiPvkdlstenlrylsseqaLaDlasfi 100
                    +++ +  f+ ry+  + +yk+ggp+ +++ ge         +++g +++lA e+++  + lEHR+YG S P++dlst+nlr+l++ qa aD+a+f 
     KKY19748.1  72 EPHSSGYFDLRYWFDASHYKQGGPVIVFLAGEDDGagRLPLIQKGLMADLASELNGIGIVLEHRYYGTSFPTEDLSTPNLRFLTTDQANADAAYFA 167
                    3456889*********************99986540045579999*************************************************** PP

  Peptidase_S28 101 kal.....kqkfklsssskwitfGgSYsgsLaawarkkyPelvvgavaSSaPllakvdfkeylevvetslakvage.cakaveqgfaeveellktk 190
                    + +     +++  ++ + +wi++G SYsg  aa++rk+yP++  ga++SS+  +a  d+++yle v    +++++  c++ + q +++v   ++++
     KKY19748.1 168 QHIvlpglEHENITAPNVPWIAYGVSYSGGQAAFVRKLYPDIFWGAISSSGVTQAIDDYWQYLEPV----RQYGPGdCIQIT-QNMTDVVDKILID 258
                    9863332256666899***********************************************987....567776488755.5555555556666 PP

  Peptidase_S28 191 egrqalkeelqlcskldek.tdkdvakffsniasefqgvvqysydgkanaalsaisikelCklllna............................. 256
                    + +  l+ +l+  ++l e  +d d+a++ +  +++ q   ++  d        + +  ++C+ +++                              
     KKY19748.1 259 SQNITLSRQLKDVFRLREVrDDADFANILTYGIMKWQSR-NWDSD------IGSGKFMHYCNNITSPsllysqpaslissvfelisitgydntsni 347
                    65788899***9999999868899999877666666543.22222......222344455555552222222233444444444444444332222 PP

  Peptidase_S28 257 skt.dlilrvevliqlfkslnqkslnlstadisyqlanaekkdssleslad.drqWlyqtCtEfgfyqttds.......eaqlfgskvpvelyidl 343
                    +++  + + + +l  +++ ++ + +nl  + i++  +    + ss +++++    Wlyq Ct  g++ t+++       +  l +  +++ +  ++
     KKY19748.1 348 TTNfLNWIGFLNLTIINSLFDPTTSNLIPSLIETRNLTPLLDSSSSSPYQNrWFCWLYQVCTQWGYFITGSGfpstldrGLPLISRLITLPYTSEF 443
                    2222222344555555566666677777777777777777777776667763679****************99888865666777888888889** PP

  Peptidase_S28 344 CedvFgasynskkvsqavkatnskYGgadnpkatnvvfvnGalDPWh 390
                    C  +F+ s +      +     ++YGg  +++  +   v G  DPW+
     KKY19748.1 444 CHSLFSISTRP-----N-LTAINQYGG-YEISYPRLAIVGGIADPWK 483
                    *****544443.....3.3334569**.99****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1310  (0.073066); expected 358.6 (0.02)
Passed bias filter:                      720  (0.0401584); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.48
# Mc/sec: 3797.24
//
Query:       KKY19749.1  [L=431]
Description: putative zinc-binding dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-10   39.5   0.0    3.2e-09   36.6   0.0    2.1  2  ADH_N       Alcohol dehydrogenase GroES-like domain
    7.5e-08   32.4   0.0    1.7e-07   31.3   0.0    1.5  1  ADH_zinc_N  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   3.6e-13   3.2e-09       2      65 ..      90     152 ..      89     161 .. 0.92
   2 ?    1.3   0.0     0.034     3e+02      91     107 ..     156     172 ..     148     174 .. 0.80

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 3.6e-13
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEE CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepli 65 
                 +ev+i  +a+g++  D ++++  +    ++p i G E++G+ve+vg+ev++++vGd+V  +  +
  KKY19749.1  90 HEVVIHNHATGLNPIDWKTVDY-NFCMPEFPWINGREMAGVVEKVGSEVSRFRVGDKVWTSTYY 152
                 89*******************9.899********************************987665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.034
                 S-SSSBSEEEECGGGEE CS
       ADH_N  91 ldGgfaeyvvvpekklv 107
                 + G+f+e v+vpe+++ 
  KKY19749.1 156 RAGCFQEFVTVPEHTVS 172
                 78***********9886 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   1.9e-11   1.7e-07       3      77 ..     232     335 ..     231     341 .. 0.67

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 1.9e-11
                 HHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHT................................TTSSEEEEEESSCSH CS
  ADH_zinc_N   3 GlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikelt................................ggegvdvvfecvGsg 69 
                 G++a+ql k +G +vi v+s+++ ++l+++lGad++i+++e + +++i e                                      + ++++ vG +
  KKY19749.1 232 GQFAIQLSKLAGLKVISVCSNQS-FKLVQSLGADHIITRDE-KTNDEILEEIlslsdtksqqeksptpatddgastpppsssssLSSRITLAIDLVG-P 327
                 9*********************8.9**************55.4444444433344466666666666666665555555555542345555666666.5 PP

                 HHHHHHHH CS
  ADH_zinc_N  70 atleaalk 77 
                 +t +  l+
  KKY19749.1 328 STSPYTLR 335
                 55555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2971.40
//
Query:       KKY19750.1  [L=264]
Description: putative short-chain dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-42  143.3   0.0    9.1e-42  142.7   0.0    1.2  1  adh_short        short chain dehydrogenase
    1.3e-21   77.2   0.0    1.7e-21   76.9   0.0    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.1e-08   35.2   0.0    1.8e-08   34.5   0.0    1.3  1  KR               KR domain
      5e-05   23.8   0.2    0.00013   22.5   0.2    1.7  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
    0.00017   21.7   0.1    0.00065   19.8   0.0    1.9  3  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
     0.0013   18.3   0.0     0.0021   17.6   0.0    1.4  1  Epimerase        NAD dependent epimerase/dehydratase family
     0.0013   18.9   0.0     0.0027   18.0   0.0    1.4  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.006   15.8   0.0     0.0082   15.3   0.0    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
  ------ inclusion threshold ------
      0.011   16.0   0.3      0.049   13.8   0.0    2.1  2  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
      0.019   14.3   0.4          1    8.7   0.1    2.6  3  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.044   13.2   0.0      0.063   12.7   0.0    1.2  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
      0.061   13.3   0.0       0.11   12.5   0.0    1.4  1  ADH_zinc_N       Zinc-binding dehydrogenase
       0.12   11.3   0.0       0.31   10.0   0.0    1.7  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
       0.18   10.5   0.6       0.28    9.8   0.1    1.5  2  WEMBL            Weak chloroplast movement under blue light
        0.3   11.0   1.6       0.43   10.4   0.1    2.0  3  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.7   0.0   7.6e-45   9.1e-42       1     191 [.      10     205 ..      10     209 .. 0.93

  Alignments for each domain:
  == domain 1  score: 142.7 bits;  conditional E-value: 7.6e-45
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S....S--SSGGG CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi....tgsgpfse 95 
                 k++l+tG+++G+G+a+a  l+k+G kv++++r+e+kl+ +ake+++    a ++ +D  d  ++ea+v+++ +++ +ld+L+nNAG+    +  gp  +
  KKY19750.1  10 KCALITGGAGGLGKAMATDLVKMGKKVIIAGRTESKLQSTAKEIGA----AAYYVLDTGDIPSLEAFVRRITEEHPELDCLINNAGVqrpfQVLGPDYD 104
                 789******************************************9....89***********************************9999999***** PP

                 CSHHHHHHHHHHHTHHHHHHHHHHHHH.HH.HCTTEEEEEEEEGGGTSB-TT.BHHHHHHHHHHHHHHHHHHHHHGGGT..EEEEEEEESSBSSHHHHH CS
   adh_short  96 lseeewervievNltgvflltravlpa.ml.kqssGrIvnvsSvagkvpvag.vaaYsAsKaavagltrslakelaptg..irvnavaPGlvdTdmake 189
                 ++ ++ ++ i++N+ g+++l+ ++++  ++  +s++ I+nvsSv g++p+ +  ++Y  +Ka ++ +t +l+ +l++    i+v+ +aP+ v+Td+ +e
  KKY19750.1 105 FDLSKADQEININIRGPLHLCVLLVQDhFKnLSSGAVIINVSSVLGFNPFSViNPVYNGTKAWLHFFTTNLRTQLSQADskIKVVEIAPPSVETDLHRE 203
                 *******************9998776527755677789***********9872689*******************987777***************988 PP

                 HC CS
   adh_short 190 lr 191
                 + 
  KKY19750.1 204 RV 205
                 76 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   1.4e-24   1.7e-21       2     187 ..      17     209 ..      16     229 .. 0.90

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 1.4e-24
                   TTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG..CSS-GGGH-HHHH CS
  adh_short_C2   2 aasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapk..lkgpfletsreef 95 
                    a g+G+a+A  l + G +v+++ + e++   +++ a+e+ga++ + +D  d  ++ea+v++++e++ +lD+l+nnag+ ++  + gp  +++ ++ 
    KKY19750.1  17 GAGGLGKAMATDLVKMGKKVIIAGRTESK---LQSTAKEIGAAAyYVLDTGDIPSLEAFVRRITEEHPELDCLINNAGVQRPfqVLGPDYDFDLSKA 110
                   578***********************998...9999*****9955**************************************999999******** PP

                   HHHHHHHTHHHHHHHHHHHH.HCTSC...CEEEEEEEGGGTSBSTTTT.HHHHHHHHHHHHHHHHHHHHGG..GTEEEEEEEE--BHCTGGGGSTTH CS
  adh_short_C2  96 draldvnlyslfllakaalp.lmkeg...gsivnlssvgaervvpnyn.aygaaKaalealtrylAvelgp..kgiRvNavspgpikTlaasgikgf 185
                   d+ +++n+++ ++l+  +++ ++k+    + i+n+ssv +   ++  n +y+ +Ka l+ +t +l  +l +   +i+v  ++p  ++T++ ++  + 
    KKY19750.1 111 DQEININIRGPLHLCVLLVQdHFKNLssgAVIINVSSVLGFNPFSVINpVYNGTKAWLHFFTTNLRTQLSQadSKIKVVEIAPPSVETDLHRERVDP 207
                   *************999999986665434378************999999*****************999876699**************98776655 PP

                   HH CS
  adh_short_C2 186 de 187
                   d+
    KKY19750.1 208 DD 209
                   44 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   1.5e-11   1.8e-08       4     140 ..      13     142 ..      11     151 .. 0.74

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1.5e-11
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TT.... CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklle.... 98 
                 litGG+GgLG+++a+ l++ g++ +++ +R+++   +   l ++ ++ ga   ++ +D  d  ++ea +++i++e+p++   i+ Agv r  ++     
  KKY19750.1  13 LITGGAGGLGKAMATDLVKMGKK-VIIAGRTES---K---LQSTAKEIGA-AAYYVLDTGDIPSLEAFVRRITEEHPELDCLINNAGVQRPFQVLgpdy 103
                 9*******************975.7789**922...2...2233445555.567779*******************************99655541222 PP

                 T--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHH CS
          KR  99 emtaedleqvlapKvkGawnLhelledesldffvlfSSiagl 140
                 + + ++ +q ++  ++G  +L  ll +   d+f  +SS a +
  KKY19750.1 104 DFDLSKADQEININIRGPLHLCVLLVQ---DHFKNLSSGAVI 142
                 455566667777777777766666654...666666666655 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.2   1.1e-07   0.00013       3      49 ..      12      56 ..      10      68 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.1e-07
                   EEE..TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-E CS
  F420_oxidored  3 gii..GaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvk 49
                   ++i  GaG +g+a+a  l++ g   +++++a  r+++k++++a+e+g+ 
     KKY19750.1 12 ALItgGAGGLGKAMATDLVKMG---KKVIIA-GRTESKLQSTAKEIGAA 56
                   566679****************...****88.*************9965 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   5.4e-07   0.00065      19      66 ..      17      63 ..       4      73 .. 0.82
   2 ?   -3.7   0.0       9.8   1.2e+04     101     118 ..     181     197 ..     171     202 .. 0.59
   3 ?   -2.0   0.0       2.8   3.3e+03      13      29 ..     234     250 ..     226     251 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5.4e-07
                  S-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEG CS
  Shikimate_DH 19 GaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkl 66
                  GaG +++ +a+ L++ g k v++a+Rt ++ ++ a+e++++ + +l+ 
    KKY19750.1 17 GAGGLGKAMATDLVKMGKK-VIIAGRTESKLQSTAKEIGAAAYYVLDT 63
                  8*************88877.******************9987766655 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 9.8
                   H.S..EEEEE--SS-SB- CS
  Shikimate_DH 101 krkkplllvDiavPRdve 118
                   + ++++ +v ia P  ve
    KKY19750.1 181 QADSKIKVVEIAPP-SVE 197
                   33455667777766.555 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.8
                   -EEEEES-SHHHHHHHH CS
  Shikimate_DH  13 kkvlliGaGemaelvak 29 
                   ++v  iG G+ +++va+
    KKY19750.1 234 ENVDTIGPGMAGKQVAQ 250
                   677789******99986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.8e-06    0.0021       1      75 [.      12      93 ..      12     138 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.8e-06
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC......EEEE--TT-HHH.HHHHHHHH.T-SEEEE--S-- CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl......elveldltdrsa.lerlfkee.qpdavihlAavg 75
                +l+tG++G +G+a++  l + g +vi   r +s+ ++ ++e +       l ++d+   +a ++r+ +e+ + d+ i+ A+v+
  KKY19750.1 12 ALITGGAGGLGKAMATDLVKMGKKVIIAGRTESKLQSTAKE-IgaaayyVLDTGDIPSLEAfVRRITEEHpELDCLINNAGVQ 93
                59**********************99998885555444333.25787877788888877751555556667778888887754 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.2e-06    0.0027       5      67 ..      17      73 ..      13      91 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.2e-06
                     --SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHH CS
  Sacchrp_dh_NADP  5 GaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaall 67
                     GaG+ G+a+a +l++ ++   ++++a+r+++kl+ +a+++    +  + ld  ++++ L+a +
       KKY19750.1 17 GAGGLGKAMATDLVKMGK---KVIIAGRTESKLQSTAKEI--GAAAYYVLDTGDIPS-LEAFV 73
                     77*************997...6**************9754..555666777777777.77665 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.9e-06    0.0082       2      43 ..      13      53 ..      12      85 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.9e-06
                     EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH. CS
  Polysacc_synt_2  2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekel 43
                     l+tG++G +G+++ + ++k+  kk+i+  r+E kl++ +ke+
       KKY19750.1 13 LITGGAGGLGKAMATDLVKMG-KKVIIAGRTESKLQSTAKEI 53
                     8****************9986.7899*********9999986 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.1e-05     0.049       6      42 ..      17      53 ..      12      76 .. 0.87
   2 ?   -1.4   0.0         2   2.3e+03      75      92 ..     131     148 ..     126     149 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.1e-05
                   --SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT CS
  NAD_binding_2  6 GlGvMGsnmalnllkagykvavynrtkekveelvaeg 42
                   G G +G+ ma+ l+k g kv++  rt++k+++ ++e 
     KKY19750.1 17 GAGGLGKAMATDLVKMGKKVIIAGRTESKLQSTAKEI 53
                   8999***************************999884 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2
                    SHCCC--TT-EEEE-S-- CS
  NAD_binding_2  75 gllealkkgdilidgsts 92 
                    + +++l++g+++i++s++
     KKY19750.1 131 DHFKNLSSGAVIINVSSV 148
                    567899*******99986 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1   0.00084         1      43      80 ..      17      55 ..       8      79 .. 0.82
   2 ?    2.7   0.0     0.057        68     110     127 ..     129     146 ..     126     148 .. 0.88
   3 ?   -2.1   0.0       1.7   2.1e+03      37      52 ..     234     249 ..     206     256 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00084
                  S-SHHHHHHHHHHHHTT-EEEEESSSHHHHH.CHHHHTC CS
  2-Hacid_dh_C 43 GlGrIGqavakrlkafgmkviaydrskkkee.eeeelgv 80
                  G+G +G+a+a  l ++g kvi+  r+++k + +++e g+
    KKY19750.1 17 GAGGLGKAMATDLVKMGKKVIIAGRTESKLQsTAKEIGA 55
                  99************************9977644555444 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.057
                   SHHHHHCSTTTEEEEESS CS
  2-Hacid_dh_C 110 naeelakmkkgailiNta 127
                    +++++ + +ga++iN++
    KKY19750.1 129 VQDHFKNLSSGAVIINVS 146
                   5789************97 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.7
                   SEEEEES-SHHHHHHH CS
  2-Hacid_dh_C  37 ktvGiiGlGrIGqava 52 
                   + v  iG G  G++va
    KKY19750.1 234 ENVDTIGPGMAGKQVA 249
                   3344455555555555 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.3e-05     0.063       1      38 [.      13      50 ..      13      93 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.3e-05
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHH CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgr 38
                   LiTG+aG  G  +a  L++ g +v++  r +s+++ + 
     KKY19750.1 13 LITGGAGGLGKAMATDLVKMGKKVIIAGRTESKLQSTA 50
                   9***********************98888777765333 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   9.1e-05      0.11       1      73 [.      20      97 ..      20     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.1e-05
                HHHHHHHHHHHHTT-EEEEEESSHHHH.HHHHHTT..ESEEEETTTC.HHHHHHHHHTT.TSSEEEEEESSCSHHHHH CS
  ADH_zinc_N  1 gvGlaavqlAkalGaeviavdsseekl.elakklG..adevinykea.dlverikeltg.gegvdvvfecvGsgatle 73
                g+G a    +  +G +vi + ++e+kl   ak++G  a +v+++ +  +l++ ++++t+ +  +d  ++ +G+++ ++
  KKY19750.1 20 GLGKAMATDLVKMGKKVIIAGRTESKLqSTAKEIGaaAYYVLDTGDIpSLEAFVRRITEeHPELDCLINNAGVQRPFQ 97
                566666666677999************557888**7455677777778888888888866679999999999888776 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00026      0.31       1      63 [.      13      72 ..      13     103 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00026
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleea 63
                ++tGgaG lG+a+   Lv++++  +v  +  r++++l++++++++ + +   D  d ++le+ 
  KKY19750.1 13 LITGGAGGLGKAMATDLVKMGK--KVI-IAGRTESKLQSTAKEIGAAAYYVLDTGDIPSLEAF 72
                69*******************5..664.45678888889999999999766666665555543 PP

>> WEMBL  Weak chloroplast movement under blue light
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.4   1.7e+03     424     438 ..      42      56 ..      38      58 .. 0.85
   2 ?    9.8   0.1   0.00023      0.28     304     361 ..     174     231 ..     172     239 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.4
       WEMBL 424 vesrLeavlkEieAa 438
                 +es+L+ ++kEi Aa
  KKY19750.1  42 TESKLQSTAKEIGAA 56 
                 689999999999998 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00023
       WEMBL 304 evkaniekakdevklLkvaaasLrseLekekaeLaslrqregmasiavssLeaelsrt 361
                 ++++++++a +++k++++a  s++++L++e+ + +  ++++g+++ +v+ + +e++r 
  KKY19750.1 174 NLRTQLSQADSKIKVVEIAPPSVETDLHRERVDPDDNKKSKGASALSVEEFMEEVKRG 231
                 578999************************************************9985 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00036      0.43       6      55 ..      17      66 ..      13      84 .. 0.85
   2 ?   -2.1   0.0       2.6   3.1e+03      52      63 ..     213     224 ..     175     231 .. 0.44
   3 ?   -2.7   0.0         4   4.8e+03       2      16 ..     236     250 ..     235     251 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00036
                --SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS CS
     3HCDH_N  6 GaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgkl 55
                GaG +G+ +a+ +++ g +V +  ++e++l++ +++i +    +   g +
  KKY19750.1 17 GAGGLGKAMATDLVKMGKKVIIAGRTESKLQSTAKEIGAAAYYVLDTGDI 66
                9***********************************99877766666665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.6
                 TTSS-HHHHCCC CS
     3HCDH_N  52 kgklkeeeveaa 63 
                 ++ +++ +ve+ 
  KKY19750.1 213 SKGASALSVEEF 224
                 333333333333 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 4
                 EEEE--SCCHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaa 16 
                 v  iG G+ G+++a+
  KKY19750.1 236 VDTIGPGMAGKQVAQ 250
                 6679********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.52
# Mc/sec: 1532.32
//
Query:       KKY19751.1  [L=725]
Description: putative ph signal transduction protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-24   86.5   8.0    2.5e-24   86.1   8.0    1.1  1  SUR7      SUR7/PalI family


Domain annotation for each model (and alignments):
>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   8.0   1.4e-28   2.5e-24       5     210 ..       8     165 ..       5     167 .. 0.86

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 1.4e-28
        SUR7   5 llflslaalilllfailgsiknstpltsiylskfdlsgldlaqigladvysfgvwgyCdnsdvnytkCskpkagypfdp.l..eelnsesngkvdlPsn 100
                 l++l++++++lll+ +l+    +  ++ i l++f+               +fgv+gyC     + ++C+  ++gy  d  +  ++ n + +    lPs 
  KKY19751.1   8 LTILLFISFVLLLLSVLS----TPIIKGIPLASFEGV-------------DFGVFGYC-----KGSDCTGIRIGYTTDGlFssDSENENFD----LPSG 80 
                 455555555555555554....34777**********.............********.....***************5333344444443....**** PP

        SUR7 101 lrktlsklnnltkalfilhiialvlsfislvvgllaicvspdnsrllsflnlllsvlsflatllaalldtllfvfvrkkinlkefgikaslglkflafa 199
                 +r++ls        l+i+h++a++l +++l ++  a+++sp++s ++++  l+l + ++l++lla+l+d+llfv                ++l++ +  
  KKY19751.1  81 TRNSLSS-------LLIVHPVAAFLNLVCLGLAAAAHLHSPSHSARYLLGLLILFLPTLLVALLAFLVDVLLFV----------------PHLQWGG-- 154
                 *******.......9***********************************************************................*******.. PP

        SUR7 200 Wlalaaallvv 210
                 W++la +++ +
  KKY19751.1 155 WIVLASTIIIA 165
                 ******99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.50
# Mc/sec: 4369.51
//
Query:       KKY19752.1  [L=582]
Description: putative extracellular developmental signal biosynthesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-65  220.7   0.0    1.4e-64  218.3   0.0    1.8  1  Gln-synt_C  Glutamine synthetase, catalytic domain


Domain annotation for each model (and alignments):
>> Gln-synt_C  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.3   0.0   7.6e-69   1.4e-64       2     330 ..     254     563 ..     253     572 .. 0.90

  Alignments for each domain:
  == domain 1  score: 218.3 bits;  conditional E-value: 7.6e-69
                 T-HHHHHHHHHHHH.HHTTCEEEEEEEEEEEEESEECCCESSEEEEEEE.TB...B.TSS-TTBHCCCCCTCCHHHHHHHHHHHTT--EECCEEECCCT CS
  Gln-synt_C   2 rdPRsvlkralarl.aeeGltvvvgpElEFflfdkeedkeasksllevdseekgrpaekggyfsvapvdeaedlrreivealealgieveashhEvatg 99 
                 ++PR  l+r+++ + +e Gl++++g+E+E + ++ ++d e ++ + e+ s+++     ++ +  + ++ +  ++++eive+l+a gi++ ++h+E a+g
  KKY19752.1 254 GCPRWSLQRQVEAAeSEFGLSLLMGFEIEIIFMKPVKDPE-TGYIKEFVSVTDM----HSWCNMTYAQLDILPMIEEIVETLAASGIHLPQFHSEAAPG 347
                 79**********995678************9999999965.6777777776322....33333334444678*************************** PP

                 EEEEEE--EECHHHHHHHHHHHHHHHHHHHHTT-EEE-SSSSSTTS---BEEEEEEEEECTTEESSB-TTSGGGB-HHHHHHHHHHHHHHHHHHHHHS- CS
  Gln-synt_C 100 QvEinlkfadalkaaDnvvtfKrvvkevArkhgltatFmpKplegdnGsgmHvhlSlwdkdgknlfadeddeyalselarhfigGllkhakaltaltap 198
                 Q E  l +  +l+++Dn++  ++++ ++Arkhgl+at  p+p+  ++G+++H h+S++      + +++            +++G+l+h+++++a+t p
  KKY19752.1 348 QWEFILPPYPPLQSVDNLYRARTIIGNIARKHGLKATVYPRPFDFTCGTACHAHFSIS-----DATYET-----------CWLAGILDHLPSILAFTLP 430
                 **********************************************************.....344444...........4****************** PP

                 SCCHHHHCSSSTTS.SSBEEEESS-TTCSEEEE-TSGGCSTEEEECEBTTS-HHHHHHHHHHHHHHHHHT.T--------S-SSSS-TTTH..TSS-B. CS
  Gln-synt_C 199 tvnSYkRlvpgyea.PvalawgarNRsallRipaskekakrvElRlpdasaNPYLalAallaAgldGien.klepgepvekdlyelspeer..kgiee. 292
                   +SY+R + g +a + +++wg +N+++ lR ++      r+E++++d++aN Y a+A ++aAgldGi+n k  ++++++ d+ ++++e+r  +gi++ 
  KKY19752.1 431 VLASYERVKGGIWAgGEWVTWGWQNKEVPLRKVE----DGRFEMKTVDGMANGYFAMASVIAAGLDGIRNrKPLIHKDCKFDASQIDEETRknLGITTr 525
                 **************789**************999....99****************************761567899***********99988777666 PP

                 --SSHHHHHHHHHCSHHHCCSS-HHHHHHHHHHHHHCH CS
  Gln-synt_C 293 lPasleeAlealeedellkevlgeevieaylalkraEl 330
                 lP++l++Ale l++del+++ lge +ie+y+a+k +E 
  KKY19752.1 526 LPNTLHKALEILKADELMNKELGEGFIENYIATKLEED 563
                 **********************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.49
# Mc/sec: 3546.88
//
Query:       KKY19753.1  [L=421]
Description: putative anion exchange family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-41  141.7   2.7    2.8e-35  122.1   0.8    2.1  2  HCO3_cotransp  HCO3- transporter family


Domain annotation for each model (and alignments):
>> HCO3_cotransp  HCO3- transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1     1e-08   0.00019      58      94 ..       3      39 ..       1      40 [. 0.95
   2 !  122.1   0.8   1.6e-39   2.8e-35     280     501 ..      40     270 ..      38     278 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1e-08
  HCO3_cotransp 58 eategaigvseslvsaaisgilfalfagqpllilgst 94
                   e+t++  gv e+l++ +++ ++fa+fa+qpl+i+g t
     KKY19753.1  3 EKTHQSYGVNEVLLASVLGSVVFAFFAAQPLVIVGVT 39
                   89********************************998 PP

  == domain 2  score: 122.1 bits;  conditional E-value: 1.6e-39
  HCO3_cotransp 280 sDfavliailvmvl...vdvllgvetpklevpeefkptsekrgwlinpleknpwwlvlaavlpallvtiLifmdqqitavivnrkenkLkKgsgyh 372
                     D++ +++i++++    ++++  v++++l  ++ f pt ++rgw+i  + ++++  v++a+  a+l+tiL++ d++++++i +  e  L+K +g+h
     KKY19753.1  40 EDYGTPLTIVFFTGfvhIGHMRDVTVERLPTSKAFFPT-SNRGWFI-HFWDISIGDVFLAIPFAILLTILFYFDHNVSSLIAQGSEFPLRKPAGFH 133
                    69********9865111566666999***********8.56*****.67799******************************************** PP

  HCO3_cotransp 373 lDLlvvavlilvlsllGlPwlvaatvlsitHvnslkvesetsapG......ekpkilgvrEqRvtgllvfiliglsvl..ltpvlklIPmpVLyGv 460
                    +D+++++++++v +llG+P+  + +++++ H +sl v+++ ++         +  + +v EqR+++l+  +l+  ++   l  vl+l+P +VL G+
     KKY19753.1 134 WDIFLLGLTTGVAGLLGIPFPNGLIPQAPFHTTSLCVTRQVVDTSeehkgkITRVVDHVVEQRLSNLAQGLLTLGTMTgpLLIVLHLVPQAVLAGL 229
                    ***********************************9998877655210002233445689*********999987777778899************ PP

  HCO3_cotransp 461 FLYmgvtsLkgiqlfdRilLllmpakhqpdtiYlrkvplrk 501
                    F+ mgv +L+g+ ++ ++l l  ++   p    l +v+ rk
     KKY19753.1 230 FFVMGVQALQGNGITLKMLFLAKEKSLTPRADPLNQVQRRK 270
                    *******************************9999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.51
# Mc/sec: 2500.06
//
Query:       KKY19754.1  [L=198]
Description: putative rho gtpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-54  184.2   0.0    1.5e-54  184.0   0.0    1.0  1  Ras       Ras family
    8.5e-21   74.4   0.0    1.3e-20   73.8   0.0    1.3  1  Roc       Ras of Complex, Roc, domain of DAPkinase
    4.7e-08   32.7   0.0    5.7e-08   32.4   0.0    1.1  1  Arf       ADP-ribosylation factor family


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.0   0.0   2.5e-58   1.5e-54       1     161 [.      10     182 ..      10     183 .. 0.98

  Alignments for each domain:
  == domain 1  score: 184.0 bits;  conditional E-value: 2.5e-58
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHH.HHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvk.kwveeik 98 
                 K+v+ Gd+avGKt+ll++++++ F+ ey++T+ +d+y+++++vdgk ++l +wDTAGqe++++lr+l+y +++++l++++i s  sf+nvk kw+ ei+
  KKY19754.1  10 KCVVTGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSASVMVDGKPISLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSPPSFDNVKaKWYPEIE 107
                 89******************************.****************************************************************** PP

                 HHSTTTSEEEEEEETTTGGG............G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras  99 rvaeenvpivLvGnKvDlee............kravsteegeelakelg.lkfletSAktnenveeafeellreil 161
                 ++a+  vpi+LvG+K Dl+e             + vs+e++  +ake+  +k+le+SA t+ n++ +f+e++r++l
  KKY19754.1 108 HHAP-GVPIILVGTKLDLREdkatadslrakkMEPVSYEQALGVAKEIRaVKYLECSALTQRNLKSVFDEAIRAVL 182
                 ****.7************************99999**************9**********************9986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.0   2.1e-24   1.3e-20       1     120 []      10     124 ..      10     124 .. 0.89

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 2.1e-24
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K v+ Gd++vGKt+ll +++++ f  ++ +t+  +++ + +  ++g       k ++l +WDtaGqe+++ l+pl + + +++++++      s++n+k
  KKY19754.1  10 KCVVTGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSASVM--VDG-------KPISLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSivsPPSFDNVK 99 
                 78999***************************999876543..333.......689******************************9865444788885 PP

                 .HHHHHHHHHCSSS-EEEEEE-TTT CS
         Roc  97 .eWlkelkkvagkspvilvgnkiDl 120
                  +W+ e++++a+  p+ilvg+k+Dl
  KKY19754.1 100 aKWYPEIEHHAPGVPIILVGTKLDL 124
                 38*********************95 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   9.6e-12   5.7e-08      12     170 ..       6     176 ..       1     181 [. 0.85

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 9.6e-12
                 TTEEEEEEEESTTSSHHHHHHHHHHSSCE.ECSSSSSEEEE.EEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHH CS
         Arf  12 kkelrilllGLDnaGKtTilkklkleelv.ttvPTigfnve.elei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLka 106
                 +++l++++ G  + GKt +l  ++++ +  + +PT+  n   ++++  k +++ +wD  Gqe   +l    +++td+ + +   +    +++ k++   
  KKY19754.1   6 TQSLKCVVTGDGAVGKTCLLISYTTNAFPgEYIPTVFDNYSaSVMVdgKPISLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSPPSFDNVKAKWYP 104
                 6899******9999************996269***988854255555599*************9999999*************************9998 PP

                 HCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSS.........SSSSEEEEEEBTTTTBTHHHHHHH CS
         Arf 107 lleeeelkevallvlaNKqDlpealseeelrellgleelk.........gkrkleiqkcsavkgeglkeglew 170
                  +e++    v++++++ K Dl+e+  +++  ++ ++e ++           r ++  +csa+++++lk+ ++ 
  KKY19754.1 105 EIEHH-APGVPIILVGTKLDLREDKATADSLRAKKMEPVSyeqalgvakEIRAVKYLECSALTQRNLKSVFDE 176
                 88664.579**************99999988888888865555555555778889999999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1453.87
//
Query:       KKY19755.1  [L=679]
Description: putative abc1 domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-21   75.3   0.1    1.2e-20   73.8   0.0    1.8  2  ABC1           ABC1 family
  ------ inclusion threshold ------
       0.15   11.9   0.0       0.28   11.0   0.0    1.4  1  Helicase_RecD  Helicase


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         1   9.1e+03      58      94 ..      93     127 ..      85     131 .. 0.68
   2 !   73.8   0.0   1.4e-24   1.2e-20      15     119 .]     229     334 ..     226     334 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1
        ABC1  58 lkllakllkkflkelrldleelvdefskslleEldfe 94 
                 ++ ++ +++k+++     l++ +++f++     ld++
  KKY19755.1  93 FSAVVYTTDKTFNASA--LTRSLRTFRTAATAALDYK 127
                 4445555555555555..8888888888888888886 PP

  == domain 2  score: 73.8 bits;  conditional E-value: 1.4e-24
        ABC1  15 deePiAaASiaqVhrAklksgeeVavKvqrpgvkkriksDlellkllakllkkflkelrldleelvdefskslleEldferEAknaekfrenfaklk.. 111
                 ++++ A+AS+aqVh Akl +g+eVa+K+q+ ++++++ +Dl ++k++a +++k++   +     lv  +s++l+ E dfe+EA+n+e ++e+++  +  
  KKY19755.1 229 EKAARASASVAQVHWAKLADGREVAIKIQKREIARQVGWDLFTFKVVAWIYSKWFDIPF---YSLVPFISERLMLETDFENEANNSELMKERVQGEPrl 324
                 67888********************************************9999987655...899999***************************9988 PP

        ABC1 112 ..evkvPkvy 119
                   +v++Pkvy
  KKY19755.1 325 rnRVYIPKVY 334
                 8779****98 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.2e-05      0.28     112     169 ..     508     567 ..     493     574 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.2e-05
  Helicase_RecD 112 ekfkrvvlatTvhGYEGtGrgfslkflkqlkkekkrelreleleepiRyaegdpl...Ekw 169
                    ++ + ++ at ++ YEG   +fs  + k+l++ ++ + r++e+++++R a  d l   Ekw
     KKY19755.1 508 KNVDIFASATLMKPYEGGDHTFSNSLRKNLSTADA-KKRQYEMQQSMRKAVRDILgdeEKW 567
                    44445555677788****************98877.99**********9998876444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.40s 00:00:01.18 Elapsed: 00:00:00.58
# Mc/sec: 3534.55
//
Query:       KKY19756.1  [L=344]
Description: putative rna binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-14   54.1   0.0      2e-14   53.1   0.0    1.4  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
  ------ inclusion threshold ------
      0.057   13.5   0.0       0.16   12.1   0.0    1.7  1  RRM_7     RNA recognition motif
        1.2    9.9   5.4        1.5    9.6   2.0    2.9  2  M         M protein repeat


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   3.4e-18     2e-14       1      64 [.     115     179 ..     115     182 .. 0.95

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 3.4e-18
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkkl 64 
                 lfVgnLp+d+t+  ++ +Fs   p  +++ ++d +tg+s+gfaf eFe+ + ++++l+ +++  +
  KKY19756.1 115 LFVGNLPYDTTNASIHNHFSALAPGFTVRHSTDkATGRSRGFAFLEFENYDVMRRCLKGYHHSIF 179
                 8********************99999********************************9998765 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.6e-05      0.16       4      67 ..     115     171 ..     112     186 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.6e-05
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLl 67 
                 +FvG lP D t++++++ f++ ++         ++++ +a+  +  +g++fl fe+ + +++ l
  KKY19756.1 115 LFVGNLPYDTTNASIHNHFSALAPGF---T--VRHSTDKAT-GR-SRGFAFLEFENYDVMRRCL 171
                 6****************999877532...2..233333322.23.4688888888776665544 PP

>> M  M protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.59   3.5e+03       1      12 [.      89     100 ..      86     102 .. 0.76
   2 ?    9.6   2.0   0.00025       1.5       5      21 .]     242     258 ..     241     258 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.59
           M   1 eakkeLEaelqe 12 
                 ea ++L+ e+ e
  KKY19756.1  89 EATQTLDGEHDE 100
                 578888888876 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00025
           M   5 eLEaelqeLeeelqaLe 21 
                 ++E+++q+L++++++L+
  KKY19756.1 242 KSESRRQKLKAKNEKLT 258
                 68*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.33s 00:00:00.92 Elapsed: 00:00:00.51
# Mc/sec: 2030.61
//
Query:       KKY19757.1  [L=353]
Description: hypothetical protein UCRPC4_g04458 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 2178.33
//
Query:       KKY19758.1  [L=536]
Description: putative atp-dependent rna helicase dbp8 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-38  132.6   0.0    2.2e-38  131.8   0.0    1.4  1  DEAD        DEAD/DEAH box helicase
    1.2e-29  102.8   0.0    3.5e-29  101.4   0.0    1.8  2  Helicase_C  Helicase conserved C-terminal domain
    7.6e-06   26.0   0.0    1.5e-05   25.0   0.0    1.4  1  ResIII      Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.015   15.6   0.1      0.076   13.3   0.0    2.3  2  AAA_22      AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.8   0.0   4.8e-42   2.2e-38       1     174 [.     117     290 ..     117     292 .. 0.87

  Alignments for each domain:
  == domain 1  score: 131.8 bits;  conditional E-value: 4.8e-42
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvd 99 
                 t+iQ+++ip++l+g+d+++  +TG+GKT af++p+lq+ +e  +  g+ a++++PtreLa q+++++  ++ + +l+ +l++gg + r q  ++ ++++
  KKY19758.1 117 TAIQKACIPELLKGRDCIGGSRTGTGKTIAFAVPILQKWAE--DPFGTYAVVLTPTRELALQIHEQFLALGAPQSLKSVLVTGGADLRTQALAIAQRPH 213
                 79*************************************98..88899*************************99*******************999** PP

                 EEEEEHHHHHHHH....HCTSSH.CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxx....xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
        DEAD 100 ivvgtpgrlddll....stgkln.lsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlpkdvk 174
                 i+++tpgrl+d++    ++ +++ ls+v+++VlDEadrll  g +  +  + + l++     + + r++++++AT++ +v+
  KKY19758.1 214 IIIATPGRLADHIrtsgED-TMRgLSRVKVVVLDEADRLLTPGKGSMLTDVETCLSSL---PPsSRRHTLLFTATVTPEVR 290
                 *************765422.2336******************7776666655555322...2423455********97775 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.4   0.0   7.7e-33   3.5e-29       2     111 .]     341     455 ..     340     455 .. 0.90
   2 ?   -3.4   0.0       2.7   1.2e+04      73      84 ..     514     525 ..     512     529 .. 0.81

  Alignments for each domain:
  == domain 1  score: 101.4 bits;  conditional E-value: 7.7e-33
                 HHHHHHHHH..HHTTTTSEEEEEESSHHHHHH.HHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSS CS
  Helicase_C   2 kleallell..kleeeggkilifvntidrlek.vklllekk..gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlpr 95 
                 k+++l+ ll   ++ +   +lif+n+ ++++  ++ +l+     ++  +lh+++pq +r e l++f++ +s++Liatdva+rG+dip+v+lVin+d+pr
  KKY19758.1 341 KPAYLMTLLqtAQNCSMPSVLIFTNRASTADLlTRTFLKLDppPFTLSTLHSQMPQAQRTENLSNFRSRKSRILIATDVASRGLDIPSVSLVINYDVPR 439
                 77888888866666777899********9977766665555889******************************************************* PP

                 SHHHHHHHHTTSSSTT CS
  Helicase_C  96 nvtsyiqriGRtgRag 111
                 ++++y++r+GRt+Rag
  KKY19758.1 440 DPATYVHRVGRTARAG 455
                 **************97 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.7
                 SGGGTSSSTSTT CS
  Helicase_C  73 tdvaerGidipk 84 
                  + +e+Gid+++
  KKY19758.1 514 MREIEQGIDMKG 525
                 56799****985 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   3.5e-09   1.5e-05      32     169 ..     138     285 ..     128     287 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 3.5e-09
                 STTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG.........GEEEESSS-B--.......-SEEEEEHHHHHHTH...... CS
      ResIII  32 aTGtGKTlvaaklierllkkgkee.kflflvprkslleqtleefkkflseayke.....igkkvsgdkkkakekdstnkkilvttiqsldadseeeeee 124
                  TGtGKT+  a  i + + + +    +++l p+++l  q  e+f  +  ++  +      g +++ +        ++  +i+++t  +l  ++ +++ e
  KKY19758.1 138 RTGTGKTIAFAVPILQKWAEDPFGtYAVVLTPTRELALQIHEQFLALGAPQSLKsvlvtGGADLRTQ----ALAIAQRPHIIIATPGRLADHI-RTSGE 231
                 5********988777777665544599*******************999998764443333333333....44559999***********999.55899 PP

                 ..HHHTTT-SEEEEETGGGTTS.......TTTHHHHHT---...SEEEEEESS- CS
      ResIII 125 seellrdrfdviiiDEaHrlgak......kswreilekfke...avllglTATp 169
                 ++  + +r +v++ DEa rl         + ++ +l ++++      l +TAT 
  KKY19758.1 232 DTMRGLSRVKVVVLDEADRLLTPgkgsmlTDVETCLSSLPPssrRHTLLFTATV 285
                 9999999999*********99976553333666666666445558889999996 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.7e-05     0.076      55     119 ..     200     275 ..     138     292 .. 0.63
   2 ?   -2.4   0.0       1.2   5.3e+03     120     136 ..     456     472 ..     445     473 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.7e-05
      AAA_22  55 dllrellralglelka...erlsseellealeqalraravielliiDEaqhlr...seealeeLrsllnl.....s 119
                 dl+++ l + ++++     ++   +++++  e+ +r  ++++++++DEa++l    +  +l+++ ++l       +
  KKY19758.1 200 DLRTQALAIAQRPHIIiatPGRLADHIRTSGEDTMRGLSRVKVVVLDEADRLLtpgKGSMLTDVETCLSSlppssR 275
                 5555555555555555443444444455666666666666***********6556558888887777655454433 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
      AAA_22 120 rkgvqliLvGtpelrkl 136
                 r g+++ ++G+++++ +
  KKY19758.1 456 REGTSITFIGQRDIELI 472
                 77899******999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3843.40
//
Query:       KKY19759.1  [L=307]
Description: hypothetical protein UCRPC4_g04460 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 2102.40
//
Query:       KKY19760.1  [L=702]
Description: putative wd repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.6e-20   70.7  16.7    0.00071   20.3   0.1    7.2  7  WD40           WD domain, G-beta repeat
    0.00011   22.4   0.1      0.002   18.4   0.0    3.0  4  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
     0.0085   14.7   4.5        0.4    9.1   0.0    3.7  4  Cytochrom_D1   Cytochrome D1 heme domain
  ------ inclusion threshold ------
      0.016   15.7   0.1        5.9    7.5   0.0    3.6  3  PQQ_3          PQQ-like domain
      0.031   14.2   0.6       0.12   12.4   0.0    2.3  2  PD40           WD40-like Beta Propeller Repeat
       0.18   11.1   0.7        4.1    6.6   0.0    2.7  3  WD40_like      WD40-like domain
       0.86    9.0  12.0        1.4    8.2  10.1    2.1  2  SDA1           SDA1


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   0.00049       1.3      17      38 .]     245     268 ..     230     268 .. 0.86
   2 ?    0.0   0.0      0.72   1.8e+03      13      26 ..     290     303 ..     280     313 .. 0.82
   3 !   16.5   0.1   4.6e-06     0.012      10      38 .]     348     377 ..     340     377 .. 0.90
   4 !   20.3   0.1   2.8e-07   0.00071       4      38 .]     384     421 ..     381     421 .. 0.81
   5 !   11.8   0.0   0.00014      0.35       6      38 .]     433     466 ..     429     466 .. 0.90
   6 !   15.9   0.0   6.8e-06     0.017       5      38 .]     510     550 ..     507     550 .. 0.74
   7 ?    0.6   0.7      0.46   1.2e+03      12      32 ..     593     613 ..     584     627 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00049
                 E..EETTSSEEEEEETTSEEEEEE CS
        WD40  17 a..fspdgawlasGsdDgtvriWd 38 
                 +  fs+dg++++s+  D +vr++d
  KKY19760.1 245 SgqFSDDGNFFFSCAQDFKVRMYD 268
                 3449******************98 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.72
                 EEEEEEETTSSEEE CS
        WD40  13 vtslafspdgawla 26 
                 +t+   spd+++la
  KKY19760.1 290 ITDATLSPDNKYLA 303
                 899999******97 PP

  == domain 3  score: 16.5 bits;  conditional E-value: 4.6e-06
                 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  10 H.ssvtslafspdgawlasGsdDgtvriWd 38 
                 H ++++sl+fs dg+ +++G+ D++v ++d
  KKY19760.1 348 HgFGIWSLRFSGDGREIVAGTSDRSVVVYD 377
                 8677****************66******98 PP

  == domain 4  score: 20.3 bits;  conditional E-value: 2.8e-07
                 EEEEESS.SSEEEEE.EETTSSEEE.EEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtsla.fspdgawla.sGsdDgtvriWd 38 
                 + t   H ++v++++  + +++ ++ sGsdD t+r+Wd
  KKY19760.1 384 VMTVQNHeDDVNAVCfGDESSPHILySGSDDTTLRVWD 421
                 677889*888****986666666545***********9 PP

  == domain 5  score: 11.8 bits;  conditional E-value: 0.00014
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++ GH  + t ++   dg++++s ++D+t ++Wd
  KKY19760.1 433 VFMGHtEGLTYVDSKGDGRYVLSNGKDQTMKLWD 466
                 56799777**************8899*******9 PP

  == domain 6  score: 15.9 bits;  conditional E-value: 6.8e-06
                 EEEESSSS.....EEEEE...EETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGHss.....vtsla...fspdgawlasGsdDgtvriWd 38 
                  t++GH s     +++      s +++++ sGs+Dg+v+i++
  KKY19760.1 510 VTFRGH-SvlktlIRCHFsppGSTNNRYVYSGSEDGKVYIYN 550
                 589***.534457744434777777777************97 PP

  == domain 7  score: 0.6 bits;  conditional E-value: 0.46
                 SEEEEEEETTSSEEEEEETTS CS
        WD40  12 svtslafspdgawlasGsdDg 32 
                 +v++ +++p+ + +a+ s++g
  KKY19760.1 593 CVRDASWHPNVPIIAATSWNG 613
                 367777*******99888754 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.74   1.9e+03      45      69 ..     247     271 ..     238     280 .. 0.87
   2 !   18.4   0.0   7.7e-07     0.002      36      90 ..     347     400 ..     331     402 .. 0.85
   3 ?   -3.8   0.0       6.3   1.6e+04      52      67 ..     536     551 ..     532     556 .. 0.70
   4 ?   -2.7   0.1         3   7.7e+03      38      57 ..     591     610 ..     586     614 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.74
  ANAPC4_WD40  45 aWkpdgklLavaysdgevrlldaes 69 
                  +++ dg+++    +d +vr++d ++
   KKY19760.1 247 QFSDDGNFFFSCAQDFKVRMYDTSN 271
                  6889*****************9876 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 7.7e-07
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                   ++  + sL+++ dg+ ++ ++sd +v ++d+e +++v +++ ++++ v+ + +g
   KKY19760.1 347 RHGFGIWSLRFSGDGREIVAGTSDRSVVVYDVERAETVMTVQNHEDD-VNAVCFG 400
                  56667899**********************************99996.8777665 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 6.3
  ANAPC4_WD40  52 lLavaysdgevrllda 67 
                      + +dg+v +++ 
   KKY19760.1 536 YVYSGSEDGKVYIYNL 551
                  5566778888888765 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 3
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavay 57 
                  +  vr+ +W+p+  ++a   
   KKY19760.1 591 KTCVRDASWHPNVPIIAATS 610
                  56799999999988888765 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.1   2.7e+02      40      66 ..     245     271 ..     233     306 .. 0.75
   2 ?    1.6   0.1     0.032        82     291     348 ..     369     425 ..     358     433 .. 0.77
   3 ?    1.9   0.0     0.025        64      44      68 ..     447     471 ..     431     478 .. 0.85
   4 !    9.1   0.0   0.00016       0.4      28      64 ..     515     551 ..     509     565 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.1
                   EEE-TT.SSEEEEEETTSEEEEEESSS CS
  Cytochrom_D1  40 srvfasdgRyvyvigRDgkvtliDLwa 66 
                   s  f+ dg + +  + D kv ++D  +
    KKY19760.1 245 SGQFSDDGNFFFSCAQDFKVRMYDTSN 271
                   678999999*99999**9999999755 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.032
                   SHT-EEEEETTBT-EEE-HHHHHT--EEEEEE-TTSS.EEEEEEE--SSEEEEEETTTT CS
  Cytochrom_D1 291 dndsvaviDkktlekvltlaesaglkvvhvEfnkdGd.evwlSvwdgkdalvvyDdktl 348
                    + sv v+D +  e v+t++++ +  v  v f ++   +++ S  d ++ l v+D ++l
    KKY19760.1 369 SDRSVVVYDVERAETVMTVQNHED-DVNAVCFGDESSpHILYSGSD-DTTLRVWDRRSL 425
                   56799**************99999.888888977765145555444.459999999887 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.025
                   TT.SSEEEEEETTSEEEEEESSSSS CS
  Cytochrom_D1  44 asdgRyvyvigRDgkvtliDLwake 68 
                     dgRyv+  g+D +++l DL +  
    KKY19760.1 447 KGDGRYVLSNGKDQTMKLWDLRKMM 471
                   569*****************97665 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00016
                   EEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEES CS
  Cytochrom_D1  28 lavletgyalHisrvfasdgRyvyvigRDgkvtliDL 64 
                    +vl+t+   H s+  + ++Ryvy  + Dgkv ++ L
    KKY19760.1 515 HSVLKTLIRCHFSPPGSTNNRYVYSGSEDGKVYIYNL 551
                   67899****************************9988 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.077     2e+02      20      39 ..     360     379 ..     347     383 .. 0.82
   2 ?    0.3   0.0      0.44   1.1e+03      23      40 .]     407     424 ..     396     424 .. 0.89
   3 ?    7.5   0.0    0.0023       5.9      17      37 ..     529     550 ..     523     552 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.077
       PQQ_3  20 dgglvyvgtgdGtlyAlDae 39 
                 dg+ +++gt+d +++ +D e
  KKY19760.1 360 DGREIVAGTSDRSVVVYDVE 379
                 566699***********965 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.44
       PQQ_3  23 lvyvgtgdGtlyAlDaet 40 
                 ++y g++d tl+  D ++
  KKY19760.1 407 ILYSGSDDTTLRVWDRRS 424
                 5899*********99886 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0023
       PQQ_3  17 p.avdgglvyvgtgdGtlyAlD 37 
                 p  + +++vy g++dG++y ++
  KKY19760.1 529 PgSTNNRYVYSGSEDGKVYIYN 550
                 3678899************776 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.4       4.4   1.1e+04      16      22 ..     248     254 ..     248     257 .. 0.52
   2 ?   12.4   0.0   4.6e-05      0.12      12      30 ..     291     309 ..     286     317 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.4
                 E-TTSSE CS
        PD40  16 fSPDGkr 22 
                 fS DG+ 
  KKY19760.1 248 FSDDGNF 254
                 6777743 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 4.6e-05
                 EEEEE-TTSSEEEEEEECT CS
        PD40  12 gaPsfSPDGkrlaFsSdRg 30 
                 ++ ++SPD k+la+sS R+
  KKY19760.1 291 TDATLSPDNKYLAYSSIRH 309
                 6789************986 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0016       4.1       3      56 ..     352     407 ..     351     419 .. 0.85
   2 ?   -1.3   0.0      0.43   1.1e+03       6      33 ..     444     471 ..     441     480 .. 0.84
   3 ?    1.2   0.1     0.073   1.9e+02      92     111 ..     534     553 ..     530     563 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0016
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd..li 56 
                 i+s+ +s +g  i+ G  d  + v+++e  e+v  v++ ed v  v + d+   +i
  KKY19760.1 352 IWSLRFSGDGREIVAGTSDRSVVVYDVERAETVMTVQNHEDDVNAVCFGDESspHI 407
                 789999***********************************998877766654455 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.43
   WD40_like   6 idiskkgslilyGgkddkctvlklesle 33 
                 +d   +g ++l  gkd+++++ +l+   
  KKY19760.1 444 VDSKGDGRYVLSNGKDQTMKLWDLRKMM 471
                 7888899**************9998765 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.073
   WD40_like  92 ddklliGtnkGsiyvfskdl 111
                 +  ++ G++ G++y+++ d 
  KKY19760.1 534 NRYVYSGSEDGKVYIYNLDA 553
                 566889999*******9994 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  10.1   0.00056       1.4     104     161 ..      14      80 ..       2     144 .. 0.53
   2 ?   -0.3   0.0      0.22   5.7e+02     207     224 ..     467     484 ..     454     504 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00056
        SDA1 104 wevesdddseedseggwidvesdee...eieesdesedeeeeeeeeeekeekeeeeeeee..........e 161
                  ++ +ddd+  d + + +++++ +e   +  +++++ dee+eeee++e+++++ e+++ee          e
  KKY19760.1  14 YDWVDDDDD-MDYDPS-MEMSETNEelyD--IDENEFDEEDEEEEDDEEDDDDYEDAAEElggidiqftiE 80 
                 333333333.333333.223222223442..2222233333333333333333333333344555555441 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.22
        SDA1 207 ttrILTpaDFaklkelra 224
                   + +T aDF k++ ++ 
  KKY19760.1 467 LRKMMTTADFDKIDPAQF 484
                 57899********99884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.85u 0.36s 00:00:01.21 Elapsed: 00:00:00.55
# Mc/sec: 3815.30
//
Query:       KKY19761.1  [L=70]
Description: putative translocation complex subunit sss1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-15   57.1   0.0    1.5e-15   56.8   0.0    1.1  1  SecE      SecE/Sec61-gamma subunits of protein translocation 


Domain annotation for each model (and alignments):
>> SecE  SecE/Sec61-gamma subunits of protein translocation complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0   8.4e-20   1.5e-15       1      54 [.      13      66 ..      13      67 .. 0.94

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 8.4e-20
                HHCHHHHHHHHHCCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHH CS
        SecE  1 kkFfkevkaElkKVtWPtrkEllkttvvVlvfvvimglflflvDlvfskli.nll 54
                k+F+++  ++l+++t+P+r+E++k++ +V ++++img+++++++l++ +++ n+l
  KKY19761.1 13 KDFLRDGTQFLNRCTKPDRREFIKISQAVGMGFLIMGAIGYIIKLIH-IPVnNIL 66
                58********************************************9.**95555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 530.37
//
Query:       KKY19762.1  [L=386]
Description: putative rrm domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0016   18.3   0.0     0.0027   17.5   0.0    1.4  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.5e-07    0.0027       2      63 ..     111     176 ..     110     183 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.5e-07
                 EEESETTTSSHHHHHHHHHT..TSCE.EEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEE CS
       RRM_1   2 fVgnLppdvteeeLkelFsk..fGpi.ksiklvrd.etgkskgfafVeFeskedAekAlealngkk 63 
                 +V++L +  te++L+ + ++   ++  k+++ +    +gkskg af+eF+s+ +A++ +++ +   
  KKY19762.1 111 IVSDLQWWNTEDDLRGWANQadAEDElKDVTFSEHkVNGKSKGQAFMEFASPQAATATKRKIDSFA 176
                 5666777777888888887733333347888888899********************999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       839  (0.0467957); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.51
# Mc/sec: 2265.64
//
Query:       KKY19763.1  [L=548]
Description: hypothetical protein UCRPC4_g04464 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.1   2.2       0.17   11.3   2.2    1.2  1  LRRFIP    LRRFIP family


Domain annotation for each model (and alignments):
>> LRRFIP  LRRFIP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.2   9.4e-06      0.17     169     280 ..      11     119 ..       7     129 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.4e-06
      LRRFIP 169 kqrdeLiedhglvlveeeatdgekeeesssssksalvskeaaellesagegtldvrLkklaeekeeLleeveklkqqleeekskksssasseelegeee 267
                 kqrd++ e+  +v+ ++++ d++++++    ++++ v  e a+  ++ g+ + +    ++  + e+L +++++l +ql+  +  ++s +++  ++ +++
  KKY19763.1  11 KQRDRMRENIEIVVETQDSYDKKEAAKARRRPSAVPVQPEDAQTASKGGSPSTEAVPGQIWSDTEHLDSSISELANQLAVDTDISRSAEDEAPVQIQID 109
                 79***************999999999999***************99999999999999************************99988888887777776 PP

      LRRFIP 268 endleiqreankl 280
                 +   ++qre ++ 
  KKY19763.1 110 S---NVQREIEQA 119
                 6...677776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4042.37
//
Query:       KKY19764.1  [L=379]
Description: putative acetylornithine deacetylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-57  195.6   0.0    1.4e-57  195.3   0.0    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.3   0.0   7.9e-62   1.4e-57       4     292 ..      36     355 ..      33     357 .. 0.89

  Alignments for each domain:
  == domain 1  score: 195.3 bits;  conditional E-value: 7.9e-62
                 CSSS--EEEECCTCCCCCCE.EEEEEGGGS.TTSBTTHHHHHHHHHHHHTT..................TTTSEEEEEBSSHHHHHHHHHHHHHT-EEE CS
        PALP   4 gigpTPlvrlprlskelgvp.lflKlEsln.ptgSfKdRgaeyllarlkeg..................tgaktvveassGNhgralAaaaallGlkvt 82 
                  + +T lv l+ +++e+gv+ ++lK+Es +  + SfK++ga++    +  +                  +   t+++a++GNhgra+A +++ lG++v 
  KKY19764.1  36 SYAQTQLVSLDYVAHEIGVKsVLLKDESSRlGLPSFKILGASWGTFCAVTQklhlpfdttldqvqatlsRCPITLFAATDGNHGRAVARMGKILGVPVS 134
                 6889**************************66**********555552222245566666777788999999*************************** PP

                 EEEETTS-HHHHHHHHHTT-EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTT.......SHHHHHHHHTHHHHHHHHTT.TTEEEEEEE-SSSHHHHH CS
        PALP  83 ivvpadaspekvallrllGaevvevggdydeavaaaaelaaegegaylvsqfd.......nptviegygtiglEileqlg.gkpdavvvpvGgGgliaG 173
                 i+vpa++    +  +r+ Gae+ve++++yd av++a   a++  g +lv+++         ++++ gy t+  Ei +q+g + +d v++pvG+G+++ +
  KKY19764.1 135 IFVPATMHVRTKNFIREEGAEIVECHSSYDMAVQTAFSEAEK-VGGILVQDTAfdgytdiPSWIVNGYRTMFREIDAQIGdRTVDLVIAPVGVGSFAQA 232
                 ***********************************7777777.67777777777755555555************************************ PP

                 HHHHHHHHSTT-EEEEEEECTTCGGTTCCS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHH CS
        PALP 174 iaaglkerrpdvrvigvepegsdalarslragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaala 272
                 +a ++k+ + +++v+ vep+++++l  sl++g+ +++++++ti+ gl++g++s+ a+++l++ vd  +t+sd e ++a + la  + i ++p++ a la
  KKY19764.1 233 VALHYKSPGRSTKVLTVEPDTAACLWMSLKKGENTPIETEHTIMAGLDCGTVSSIAWPILRDGVDASITISDLESHQASQDLA-QHSISAGPCGSAPLA 330
                 *******99999***********************************************************************.*************** PP

                 HH.....HHHHHHCCTTCEEEEEEE CS
        PALP 273 al.....klreagelkegdrvvvil 292
                 al     + +e  +l ++++vv++ 
  KKY19764.1 331 ALrklrkEDLESLQLTDKSTVVLLC 355
                 **87766666666777776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.54
# Mc/sec: 2100.29
//
Query:       KKY19765.1  [L=721]
Description: nrps-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-23   82.1   0.0    1.4e-22   80.1   0.0    1.9  2  NAD_binding_4  Male sterility protein
    6.9e-06   25.7   0.0    1.6e-05   24.5   0.0    1.5  1  Epimerase      NAD dependent epimerase/dehydratase family
    0.00054   19.9   0.0     0.0012   18.8   0.0    1.6  1  KR             KR domain
  ------ inclusion threshold ------
      0.027   14.8   0.1      0.071   13.5   0.1    1.8  1  PP-binding     Phosphopantetheine attachment site


Domain annotation for each model (and alignments):
>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.19   8.4e+02      94     127 ..     103     136 ..     101     162 .. 0.87
   2 !   80.1   0.0   3.1e-26   1.4e-22       1     257 []     306     551 ..     306     551 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.19
                    --SS-S.STTSSEEHHHHHHHHHHHHHHHTSSS- CS
  NAD_binding_4  94 saAtvnfdepykellrvNveGtrevlelakklkk 127
                     aAt++ +e +++l+ v +eG r++  +ak +++
     KKY19765.1 103 AAATLSKEEYTNQLWPVITEGNRQLSAFAKIGRE 136
                    7999999999999****************96655 PP

  == domain 2  score: 80.1 bits;  conditional E-value: 3.1e-26
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--S CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdviihsaA 96 
                    lTGaTG LG+ +l +L+ + ++ +iy+ vRak+  +a  R  ++le ++   + l   ++r+++ + Dls   l ++++ l + a ++++iih a 
     KKY19765.1 306 LTGATGSLGSAILCELIGNPTA-RIYCPVRAKNVPNAISRTLAALECNGYNGKGL---PSRVHIFPCDLSIFPLSIPQDILSTFALSLTHIIHAAW 397
                    8****************99986.******************9**99999999996...************************************** PP

                    S-S.STTSSEEH.HHHHHHHHHHHHHHTSSS--.-EEEEEE..GGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHHHHH CS
  NAD_binding_4  97 tvnfdepykell.rvNveGtrevlelakklkklkvllhvST..ayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEklvre 189
                     vnf  +++ +  +  ++    +l+l  +++    ++++S+   +++    +++             +de  +++    +++Y +sK++aE+++++
     KKY19765.1 398 AVNFSLSLSSFEpQLQTLHFLYCLTLLVQRSTPAGFMFCSSigTAMASPLGTTI-------------EDEPIPSQACCAATGYARSKFVAERILES 480
                    *********9753788999999999999999999******98544444444444.............89999999999****************** PP

                    HHHHH---EEEEEE-EEE--SSST---TTSHHHHHHHHHHH.H-EEES-SB---TT....--EEEHHHHHHHH CS
  NAD_binding_4 190 arrrsglpvvivRpsiitgesktGwingsdlgirgllglia.kgvlpeilgdkeav....ldlvpvDyvanai 257
                    a+ + + +v+i+R++ i+ +   G+++  +   +++  +i   + ++ + g++  +    + ++pv+++a++i
     KKY19765.1 481 ASAK-NQNVTILRLGQIIPSMNHGASKLWN-PSEMIPLVIScSKDIKAFPGTPGPRcvdsCTWIPVNVLAKVI 551
                    **77.9******************998888.777776666645556666666665666889999999999886 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   3.5e-09   1.6e-05       1     173 [.     304     497 ..     304     527 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 3.5e-09
                 EEEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHC......................EEEE--TT-HHHHHHHHHHHT-SEEEE--S--- CS
   Epimerase   1 ilVtGatGfiGsalvkallekg.yevigldrlssasntarledl......................elveldltdrsalerlfkeeqpdavihlAavgg 76 
                 +l+tGatG +Gsa++ +l  +   ++ +  r ++  n  ++  l                      +l    l  ++++   f+    +++ih+A   +
  KKY19765.1 304 VLLTGATGSLGSAILCELIGNPtARIYCPVRAKNVPNAISRT-LaalecngyngkglpsrvhifpcDLSIFPLSIPQDILSTFA-LSLTHIIHAAWAVN 400
                 699***********9999999955598888887777765544.4599**************77666566666666678888888.49*******88666 PP

                 HHHHHHSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEE..GGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE CS
   Epimerase  77 vaassedpadfieknlqgtlnlleaarkagvkrllflsS..sevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnly 173
                  + s ++ +  ++ +l+  + l   ++++ +  ++f+sS  +++  +  ++ ++e + ++ +   + Ya++K  +e+++e++ a+++ n++ilrl  ++
  KKY19765.1 401 FSLSLSSFEPQLQ-TLHFLYCLTLLVQRSTPAGFMFCSSigTAMASPLGTTIEDEPIPSQACCAATGYARSKFVAERILESASAKNQ-NVTILRLGQII 497
                 6666666666554.4455555555567778889******88777777777438999999999********************99995.9****998776 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.7e-07    0.0012       1      96 [.     302     403 ..     302     448 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.7e-07
                 SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-.......EEEE----TT-HHHHHHHHHHHHHHS.S---EEEE---- CS
          KR   1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealga.......evevvaaDvsdkdavealleeikaee.ppikGvihaAgv 91 
                 +t+l+tG++G+LG ++   l+ +  +++ +  R +++ ++ ++++a+le +g        +v+++++D+s      ++ ++i +++  +++ +ihaA +
  KKY19765.1 302 ATVLLTGATGSLGSAILCELIGNPTARIYCPVRAKNVPNAISRTLAALECNGYngkglpsRVHIFPCDLSIFPL--SIPQDILSTFaLSLTHIIHAAWA 398
                 689*******************************999999999********999999999********997542..33344444444789999999988 PP

                 ----- CS
          KR  92 lrdkl 96 
                 ++ +l
  KKY19765.1 399 VNFSL 403
                 87665 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.6e-05     0.071       1      67 []     191     260 ..     191     260 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-05
  PP-binding   1 eklrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgv.....eiplsdlfehptlaelaayl 67 
                 ++l+e ++  l++  +    + d+f  G+DS  a++ ++ + +++++     ++++ ++fe  ++++la++l
  KKY19765.1 191 QWLVEEFEHKLNIVIKN--REVDFFAAGVDSQKAIQAQRLIIQTLDLgqstrRVSSLVVFEQGNIKRLAKFL 260
                 57888899999998776..89************************99889999999999********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.51
# Mc/sec: 4217.60
//
Query:       KKY19768.1  [L=476]
Description: putative mfs [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-42  145.2  24.3    4.3e-42  144.3  15.0    2.0  2  MFS_1     Major Facilitator Superfamily
    3.2e-10   39.5  22.7    3.7e-10   39.3  11.6    3.0  3  Sugar_tr  Sugar (and other) transporter
    0.00032   19.3   8.4    0.00048   18.7   8.4    1.2  1  TRI12     Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
       0.36    9.1  10.2       0.16   10.3   4.4    2.7  2  OATP      Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.3  15.0   9.7e-46   4.3e-42       2     270 ..      79     379 ..      78     394 .. 0.82
   2 !    6.3   2.2   0.00087       3.9     118     183 ..     400     463 ..     387     474 .. 0.80

  Alignments for each domain:
  == domain 1  score: 144.3 bits;  conditional E-value: 9.7e-46
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 ++++++s ++++i++pa++  +a++++ s  ei+l +t+y + +a+a l++G lsd +Grr v+++++++++++ + l++ +++ +l+vlr+lq+ g++
  KKY19768.1  79 VFSTIFSPFSSFIYLPAIT-PIAKSYHRSLGEINLTVTVYQIMQAIAPLFFGDLSDQIGRRLVYIITFAIYIAANIGLALQHNYAALMVLRALQSTGSS 176
                 6899***************.8*****************************************************44444558888************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........... 188
                 a +++g a+++d+++  erg +i  ++a++ ++++l+p+lgg+l+  lgWr++f++l i++ +++v+ + ++pe++++   + +++             
  KKY19768.1 177 ATVAIGSAVMSDVTTSAERGGYITAVQASVMFAPALAPVLGGILTKFLGWRSTFWFLVIAAGVFLVVYVSFVPETARNIVGNGSIPPPrlsssltsilh 275
                 ******************************************************************988999888888888888888888888888888 PP

       MFS_1 189 ....................kgtgpaplvp...........awkallkdpvlwillialllfffgfsglltllpl..ylqevlglsglllaglllalla 254
                                     k+                   a+ +++ + v    l+++++  f+++ + +l+pl   ++ +++++  l++gl +  ++
  KKY19768.1 276 wrrklhnlesqpdhstppqpKK-------VprkipipniaaAILIIFEKDVG---LLMFFMSLFVMANYAMLVPLqdVIRRQYNFN-DLQVGLCYIPFS 363
                 8888888888777655554422.......12222333555656666666633...333333333333344444444456*******.599999999999 PP

       MFS_1 255 lvgailallagrlsdr 270
                 ++++++++ +g+l++ 
  KKY19768.1 364 IGSIVGSVGVGKLLNW 379
                 999999*******986 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.00087
       MFS_1 118 ergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrks 183
                 + gr+ + ++++ +  +++g ++  ++++++g+  +++++++v l a     ++++++  +++r++
  KKY19768.1 400 NPGRVSSSFNLTRASTSAVGTAVVQYIIDAWGYGFTYLFMGLVVLAASP--SVWIVRNWGPKWREE 463
                 667888888888888899****************************955..577777666666665 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3  11.6   8.2e-14   3.7e-10      47     202 ..     109     259 ..      78     262 .. 0.89
   2 !    6.5   0.1   0.00072       3.2      23      72 ..     330     379 ..     313     385 .. 0.70
   3 ?   -0.4   0.3      0.09     4e+02      60      88 ..     417     445 ..     402     454 .. 0.59

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 8.2e-14
                 HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHH CS
    Sugar_tr  47 lsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyql 145
                  + l+v ++++ ++i  lf+g l+d +GR+ +++i+ ++++++++  a+ +   ++ +l+v R l   g  ++ ++ +  +s +++ + Rg  ++  q 
  KKY19768.1 109 EINLTVTVYQIMQAIAPLFFGDLSDQIGRRLVYIITFAIYIAANIGLALQH---NYAALMVLRALQSTGSSATVAIGSAVMSDVTTSAERGGYITAVQA 204
                 47899**********************************************...9******************************************** PP

                 HHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHH.HHHHHHGGGS---HHHHHHTT CS
    Sugar_tr 146 aitfGilvaaifglglnktsnadgwrillglqlvpa.llllilllflPESPrylvekg 202
                 ++ f   +a ++g +l k+ +   wr ++++ ++ a ++l++ + f+PE+ r  v +g
  KKY19768.1 205 SVMFAPALAPVLGGILTKFLG---WRSTFWFLVIAAgVFLVVYVSFVPETARNIVGNG 259
                 *********************...*****9887776256667779*****99777665 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.00072
                 HHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  23 ltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdr 72 
                 ++ + +     +++ + +++  ++++gl+   f++G+i+Gs+ +g+l ++
  KKY19768.1 330 VMANYAMLVPLQDVIRRQYNFNDLQVGLCYIPFSIGSIVGSVGVGKLLNW 379
                 3333333333333334444446789*********************9886 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.09
                 HHHHHHHHHHHHHTTHHHHHHHHHHHHHH CS
    Sugar_tr  60 iiGslfagllgdrfGRkkslliaavlfvi 88 
                 ++G  ++ +++d +G+  ++l++++++++
  KKY19768.1 417 AVGTAVVQYIIDAWGYGFTYLFMGLVVLA 445
                 44555555555555555555555544444 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   8.4   1.1e-07   0.00048      80     225 ..     110     255 ..      59     261 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.1e-07
       TRI12  80 sslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntlla..amtllgvaagpagasplfvge.lmsnktkfl...g.lliv 171
                  +l  t++ + qa++ l +g l+d++grr + i+t  + +   i  +   ++ +l+   a+   g +a       + +g  +ms+ t      g +  v
  KKY19768.1 110 INLTVTVYQIMQAIAPLFFGDLSDQIGRRLVYIITFAIYIAANIGLALQHNYAALMVlrALQSTGSSAT------VAIGSaVMSDVTTSAergGyITAV 202
                 35678999****************************998766654444444544432113333343343......444432555554432121414457 PP

       TRI12 172 sipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaql 225
                  + v+   +l+p lg  l+    wr  f+  +i + +  l++ v + p + +++
  KKY19768.1 203 QASVMFAPALAPVLGGILTKFLGWRSTFWFLVIAAGVF-LVVYVSFVPETARNI 255
                 888888899********************998877654.344456666666655 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.3     0.035   1.5e+02     275     349 ..      50     127 ..       9     151 .. 0.57
   2 ?   10.3   4.4   3.5e-05      0.16     135     194 ..     164     223 ..     154     390 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.035
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 275 eelkslkdfpkalkrllknpifllvilssvfeillvaGf..itFlpky..lEtqFslsaseAnlltGvvvipgaalGil 349
                 + +++++  p+ + ++++ ++ ++++l +vf   ++++f  +++lp    + + ++ s  e nl + v+ i+ a++ ++
  KKY19768.1  50 RNKDEIQTPPALVHSVFSPKMKIFLVLMTVFST-IFSPFssFIYLPAItpIAKSYHRSLGEINLTVTVYQIMQAIAPLF 127
                 455566666666666666666666666655542.333330034445443355555555555555555555555554444 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 3.5e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 135 fflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllkl 194
                 +++   l+  G+++ +++G + + D +++ +   y+ +++a  ++ pal+ +lG++l+k+
  KKY19768.1 164 LMVLRALQSTGSSATVAIGSAVMSDVTTSAERGGYITAVQASVMFAPALAPVLGGILTKF 223
                 4555778999**********************************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 3124.12
//
Query:       KKY19769.1  [L=125]
Description: putative protease inhibitor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-07   30.5   0.0    3.8e-07   30.5   0.0    1.1  1  PBP       Phosphatidylethanolamine-binding protein


Domain annotation for each model (and alignments):
>> PBP  Phosphatidylethanolamine-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   2.1e-11   3.8e-07      63      99 ..      48      94 ..       7     118 .. 0.70

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 2.1e-11
                EE-B-TTSS.....CCCC...S---B--STTS..EEEEEEEE....EES CS
         PBP 63 vqgknslge.....eses...gYlgpcPpkgdgkHrYvflly....ald 99
                v+g  s ++     e       Y gp+Pp+++ +HrY+flly    +ld
  KKY19769.1 48 VKGADSTTKlvagdE--PfiaDYAGPGPPPQSSPHRYIFLLYeqpeGLD 94
                455555555444331..1455***********99********4443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       197  (0.0109878); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 833.79
//
Query:       KKY19770.1  [L=198]
Description: hypothetical protein UCRPC4_g04377 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1431.66
//
Query:       KKY19771.1  [L=308]
Description: putative golgi membrane [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-05   22.2  16.1      0.034   13.9   9.3    2.6  2  Yip1      Yip1 domain


Domain annotation for each model (and alignments):
>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.5     7e-06      0.13      13      86 ..     123     176 ..     104     185 .. 0.72
   2 !   13.9   9.3   1.9e-06     0.034      92     152 ..     224     283 ..     215     307 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7e-06
        Yip1  13 kkeppilrapdlallllalltlllgllaslnlgqtlasgeevqgltlssllgaiiggylglllgllllalllhl 86 
                 + +p i++++dl+++ll+l+ +  +l++s                 ++ + g+i+g++l   +g l l l++ l
  KKY19771.1 123 RPSPHIMDDSDLYGALLFLILYGTFLALS-----------------GKFFYGYIYGIAL---FGSLALHLIFSL 176
                 3344499**********************.................3444444444444...555555555555 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.9e-06
        Yip1  92 ggkgsfkqtlsvvgyallPlilgaliaillllllgtllllvgllaliWslvllylglkaah 152
                  ++ ++ ++ sv+gy++lPl + al++il+ + +   ++++  la++W+++  ++ + ++ 
  KKY19771.1 224 SSTLTYSRSASVLGYCFLPLTFTALFGILVPMDTLL-GYILTSLAVAWCTFSSSGIFVSVG 283
                 47889************************9999885.9999*******9987777666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.50
# Mc/sec: 1863.64
//
Query:       KKY19772.1  [L=1859]
Description: putative fatty acid synthase alpha subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-76  255.3   0.0    1.3e-75  253.5   0.0    2.0  1  FAS_I_H          Fatty acid synthase type I helical domain
    7.5e-75  250.7   0.0    1.7e-74  249.6   0.0    1.6  1  Fas_alpha_ACP    Fatty acid synthase subunit alpha Acyl carri
      1e-21   77.7   0.0      2e-21   76.7   0.0    1.5  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    9.1e-18   64.4   0.0    2.3e-17   63.1   0.0    1.7  1  ACPS             4'-phosphopantetheinyl transferase superfami
    2.3e-11   43.8   0.2    5.9e-11   42.4   0.0    1.8  2  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
     0.0011   18.9   0.0     0.0026   17.7   0.0    1.6  1  KR               KR domain


Domain annotation for each model (and alignments):
>> FAS_I_H  Fatty acid synthase type I helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.5   0.0   4.2e-79   1.3e-75       1     202 [.     324     525 ..     324     526 .. 0.99

  Alignments for each domain:
  == domain 1  score: 253.5 bits;  conditional E-value: 4.2e-79
     FAS_I_H   1 tkkqnelvrqqlevlaryLgvdseasereaaessaevaelqaeLdlweaEhgdeylkgikpiFdakKaRrydSaWNwarqdilklyydllqgrlkdvdr 99 
                 tk+q++l++qqle++aryL++d ++++++  +s+   ++lqa++dlw++Ehg+ y++gi+p+F+++KaR+ydS+WNwarqd+l++yyd+++grl++vdr
  KKY19772.1 324 TKDQRALFKQQLELFARYLKIDLRSGDKAFVNSQLSSKALQAQIDLWNTEHGEFYASGIEPSFTPLKARIYDSSWNWARQDALTMYYDIIFGRLQTVDR 422
                 689****************************999999************************************************************** PP

     FAS_I_H 100 eiksrlqrilnRadenlvdlvqyllkkakassgekyaaakelgekllknarsalsaapvyvelseptaPrttidekGnieYeEvpragvqeledyveel 198
                 ei s++ ri+nR+++ l+d++qy+++++++++ge+ya+akelg++l++n+++ l  apvy+++  pt+P+tt+d++Gn+ Y+Evpra++++le+yv+e+
  KKY19772.1 423 EIVSQCIRIMNRSNPLLLDFMQYHIDNCPTERGETYALAKELGQMLIENCKDVLGVAPVYKDVGLPTGPQTTVDARGNLDYQEVPRASARKLEHYVREM 521
                 *************************************************************************************************** PP

     FAS_I_H 199 ksGs 202
                 ++G+
  KKY19772.1 522 AEGG 525
                 **97 PP

>> Fas_alpha_ACP  Fatty acid synthase subunit alpha Acyl carrier domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.6   0.0   5.6e-78   1.7e-74       2     162 .]     137     297 ..     136     297 .. 0.99

  Alignments for each domain:
  == domain 1  score: 249.6 bits;  conditional E-value: 5.6e-78
  Fas_alpha_ACP   2 DepvkavdivraivaqklkkkldevplsksikdlvgGkStlqNEilgdLqaEfgslpekaedlpleelaealqesfsGklGkqssslisrlvsskm 97 
                    D pv+avdi+r++vaqklkk l ++plsk+ikdlvgGkStlqNEilgdL++Efgs+pek+ed+pl+el++++q++f+G+lGkqsssli+rlvsskm
     KKY19772.1 137 DVPVQAVDILRVLVAQKLKKGLGDIPLSKAIKDLVGGKSTLQNEILGDLGKEFGSTPEKPEDTPLDELGASMQATFNGQLGKQSSSLIARLVSSKM 232
                    99********************************************************************************************** PP

  Fas_alpha_ACP  98 pggfnlaairkyLekrwglgpgrqdsvlllavtsePakRlgseaeAkafldsvvqkyakkagisL 162
                    pggfn++a+rkyLe+r+glg+grqd+vllla+t+ePa+Rlgse++Aka+ld+v +kya++agi+L
     KKY19772.1 233 PGGFNITAVRKYLETRFGLGAGRQDGVLLLALTMEPASRLGSENDAKAYLDDVSNKYAASAGINL 297
                    ***************************************************************97 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.0   6.8e-25     2e-21      50     252 ..    1154    1364 ..    1140    1365 .. 0.83

  Alignments for each domain:
  == domain 1  score: 76.7 bits;  conditional E-value: 6.8e-25
                     STTEEE-BSS.EEE..STTEGGTTSTHHHHHHHCTS-HHHHHHHHHHHHHHHHHTS-HHTC.....TTGGEEEEEEESSTHHHHHHHHHHHTT. CS
  ketoacyl-synt   50 paraagkiktklggfldvddfdpeffgispreaeamdpqqrllleaawealedagltpeel.....dgsrvgvfiGvgagdyaalaaldedgs. 137 
                     ++ +ag+i+t          +d++ +g++++  +++d ++ ++l++++e l +ag+t+        + s+vg+++G+g+g + al+ ++  ++ 
     KKY19772.1 1154 DRFVAGQIPT---------GWDAKKYGVPEDIIDQVDQVTLFVLVCVAESLLSAGITDPYEfykyvHLSEVGNCVGSGIGGTTALRGMY--KDr 1236
                     5667777777.........7999*********************************77666577766667**********775544444..433 PP

                     ..GGGSCTTHHHHHSTTHHHHHHHHH.HT--SSEEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSG... CS
  ketoacyl-synt  138 ..evkaspkavgavlanviagrisya.lglrGpsvtvdtACsSslvavhaavqslrsgeadvalaGGvellltpeavagfsaagllspdgr... 225 
                       ++ +  ++++    n++++ +++  l  +Gp  t++ AC+++   v+  ++ +++g+a v+++GG + ++++e+ + f++++++s+ +    
     KKY19772.1 1237 flDKPVQKDILQESFINTMSAWVNMLlLSSTGPIKTPVGACATAVESVDIGYETIVEGKARVCIVGGFD-DFQEEGSYEFANMKATSNAEEeva 1329
                     344444445566689**********999*****************************************.999999********8888744366 PP

                     .....GGTTBTTB...-SB-BB-EEEEEEEEECHH CS
  ketoacyl-synt  226 .....ckafdpka...dGfvlGEGvGavvLkrled 252 
                           + ++p     +Gf+ ++G+G+ vL++++ 
     KKY19772.1 1330 hgrtpKEMSRPTTttrNGFMESQGCGVQVLMTAQL 1364
                     6667755566655777**************98875 PP

>> ACPS  4'-phosphopantetheinyl transferase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0   7.8e-21   2.3e-17       2     112 ..    1742    1853 ..    1741    1856 .. 0.88

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 7.8e-21
                  EEEEEEEHHHHH.HHH-----HHHHHS-HHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTS-SSS.S--GGG-EEEE-TTS-EEEE-S-SSEEEE CS
        ACPS    2 vGiDieklsrlrkrvkrrgakilkrifteeErkllkssdeearaelfarlWaaKEAllKalgpglrk.lldfksievledstgrptlellseakkka 97  
                  vG+D+e++++++     +++ +++r ft++E+++++++ ++++    a++W+aKEA++K+lg   +    ++ +ie+ +d++g+pt+el++ea+  a
  KKY19772.1 1742 VGVDVEDIKAIN-I---ENETFVQRNFTAKEQEYCNKAANPQA--SYAGRWSAKEAVFKSLGVSSKGaGASLSEIEIGTDANGAPTVELHGEAATAA 1832
                  9*****888888.4...7889****************999999..99**************888844499*************************** PP

                  EEEE-..........SSEEEE CS
        ACPS   98 wkleslkid......kdyvia 112 
                   k + ++++      +  +ia
  KKY19772.1 1833 KKAGINSVNvsishsDTQAIA 1853
                  *99999888777776555555 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0     2e-14   5.9e-11      29     117 ..    1496    1586 ..    1469    1587 .. 0.89
   2 ?   -4.3   0.3       5.8   1.7e+04      67      92 ..    1827    1849 ..    1812    1858 .. 0.47

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 2e-14
                       HHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG..SCTSEEE-THHHH-B-GGGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   29 aiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar..kqplavgSvKsniGHleaAaGvaelikvvlalkhgvipptlnl 117 
                        ++ ala+ g++ +d d+ + hgt+t ++D++E   + + +++ +r   + l    +K ++GH ++AaG+  +  ++++l+ g +p + n 
       KKY19772.1 1496 PLRGALATWGLTIDDLDVASFHGTSTVANDKNESDVICEQMKHLGRrkGNALLAIFQKYLTGHPKGAAGAWMMNGCIQVLNSGLVPGNKNA 1586
                       4899**************************************999988667777889*****************************99875 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 5.8
                       HHHGGGGGSCTSEEE-THHHH-B-GG CS
  Ketoacyl-synt_C   67 kvfgekarkqplavgSvKsniGHlea 92  
                       ++  + +   +  ++Sv  +i H+  
       KKY19772.1 1827 EAATAAK---KAGINSVNVSISHSDT 1849
                       2222222...3455555555555544 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   8.7e-07    0.0026       4      77 ..     654     729 ..     652     739 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 8.7e-07
                 EEET.TTSHHHHHHHHHHHHHHS-EEEEE-SS...--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHH CS
          KR   4 litG.GlGgLGlelarwlaekgarhlvllsRsa.aadedskaliaelealgaevevvaaDvsdkdavealleeika 77 
                 l+tG G+G++G e+ + l++ ga+ +v +sR + +++e  +a+ a++ a+g +  vv+    +k++veal++ i +
  KKY19772.1 654 LMTGaGAGSIGAEVLQGLISGGAKVIVTTSRFSrEVTEYYQAMYARFGARGSQLVVVPFNQGSKQDVEALIDYIYD 729
                 6788579************************75378889999****************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1859 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.47
# Mc/sec: 11790.76
//
Query:       KKY19773.1  [L=2098]
Description: putative fatty acid synthase beta subunit dehydratase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.7e-162  539.7   0.0   4.8e-162  538.8   0.0    1.5  1  DUF1729          Domain of unknown function (DUF1729)
    2.5e-92  309.8   0.0    3.3e-90  302.8   0.0    2.8  3  Acyl_transf_1    Acyl transferase domain
    5.7e-55  185.1   0.0    1.4e-54  183.8   0.0    1.7  1  FAS_meander      Fatty acid synthase meander beta sheet domai
    8.5e-41  139.0   0.1    5.4e-39  133.2   0.0    2.5  2  FAS_N            N-terminal domain in fatty acid synthase sub
    2.1e-39  135.7   0.1    6.1e-39  134.2   0.0    1.8  2  SAT              Starter unit:ACP transacylase in aflatoxin b
    7.4e-38  128.9   0.1    2.1e-37  127.4   0.0    1.8  2  MaoC_dehydratas  MaoC like domain
    4.3e-24   85.1   0.0    1.3e-23   83.6   0.0    1.8  1  MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
  ------ inclusion threshold ------
      0.098   12.7   0.1        0.2   11.6   0.1    1.4  1  MCRS_N           N-terminal region of micro-spherule protein
       0.16   11.3   0.3        2.7    7.3   0.3    2.4  1  NMO              Nitronate monooxygenase


Domain annotation for each model (and alignments):
>> DUF1729  Domain of unknown function (DUF1729)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  538.8   0.0  2.4e-165  4.8e-162       1     353 []     738    1087 ..     738    1087 .. 0.99

  Alignments for each domain:
  == domain 1  score: 538.8 bits;  conditional E-value: 2.4e-165
     DUF1729    1 piilqwtggraGGHHSledleaplletYakiRkqkNvvlvvGsGlgdaedsieyltGeWskelglppmPvdgillgsavmvakEaktseevkqlive 97  
                  p+ilqwtggr+GGHHS+ed+++p+l++Y++iRk++N+vlv+GsG+g aed+++yltG+Ws ++g+ppmP+dg ++gs++mvakE +ts ++k++iv+
  KKY19773.1  738 PVILQWTGGRGGGHHSFEDFHQPMLQMYGRIRKCDNIVLVAGSGFGGAEDTYPYLTGTWSARFGYPPMPFDGCMFGSRMMVAKECHTSYNAKKAIVD 834 
                  79*********************************************************************************************** PP

     DUF1729   98 tpGvkdeeWeatykkpaGgvvsvrSelgepihkianraaklwkeldetifsleavekrkaalekkrdeiierlnkdyakpwfavdeegelveleemt 194 
                  ++Gv+d++We+tyk paGgv++vrSe+gepihk+a+r++ +w e+d+tif l +++kr+a+l+kkrd+ii++ln d++k+wf+ ++ g++v+le+mt
  KKY19773.1  835 AEGVDDSQWERTYKGPAGGVITVRSEMGEPIHKLATRGVIFWAEMDKTIFAL-DKKKRVAELQKKRDYIIRKLNDDFQKVWFGRNSAGKTVDLEDMT 930 
                  ****************************************************.9******************************************* PP

     DUF1729  195 YsevvrRlveLaflksrkewidpswkklfqdllqrveeRltaeehgeaesllesvealedPaeavetllaaypsaeaqlltaeDvawflqlvqrrgi 291 
                  Y+ev+rR+veL+++k++++wid+s+kkl+ d+++r eeR+  ++++ ++sl++++++l++P+ +v+++laayp+ae+ql+ a+Dv++fl l+qrrg+
  KKY19773.1  931 YAEVTRRMVELMYVKHQSRWIDQSLKKLTVDFVHRLEERF--TNNRGKASLVQNYSDLDNPYPTVDNILAAYPEAEKQLISAQDVQHFLLLCQRRGQ 1025
                  ****************************************..55578999*********************************************** PP

     DUF1729  292 KPvpFvPvldedfeaffkkdslwqsedldavvdqdaqrviilqgpvavryitkvdepvkeil 353 
                  KPvpFvP lde+fe++fkkdslwqsedl+avvdqd+ r++ilqgp+av+y+tk+depvk+il
  KKY19773.1 1026 KPVPFVPSLDENFEFWFKKDSLWQSEDLEAVVDQDVGRTCILQGPMAVKYSTKIDEPVKDIL 1087
                  ************************************************************98 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.018        36      54     108 ..     240     302 ..     205     341 .. 0.69
   2 ?   -2.6   0.0       1.5   2.9e+03     146     180 ..    1593    1628 ..    1589    1636 .. 0.79
   3 !  302.8   0.0   1.7e-93   3.3e-90       2     317 ..    1691    2063 ..    1690    2064 .. 0.98

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.018
                    TGGGSHHHHHHHHHHHHHHHHHHH.HHTT-TTSEE.......EE-TTHHHHHHHHCCSSSHHH CS
  Acyl_transf_1  54 glldaiqfvqpaLaavqialaell.kskGvrpaav.......vGHSlGElAaavvagalssee 108
                      l +  ++ p + +vq+a +++  ++ G++p+ v        GHS+G + aa+ a+  s e 
     KKY19773.1 240 EYLVSAPVSLPLIGLVQLAHYQVTcRALGQTPGEVrerfsgtTGHSQGIVTAAAIATGTSWES 302
                    5566666777778889999999877899988876644444448*****998887776554332 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.5
                     T.EEEEEEECCCCECC.EEHHHHHHHHHHHHHCC.C CS
  Acyl_transf_1  146 dvvgavansprrvvis.gsqealrelvervskegvg 180 
                     ++  a an p++++ +  s++a+r lve +++e+  
     KKY19773.1 1593 RIFAAYANLPGTITHGmYSSAAVRSLVETWAAENNI 1628
                     567788899999987637899***********9943 PP

  == domain 3  score: 302.8 bits;  conditional E-value: 1.7e-93
                     EEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T.......................................... CS
  Acyl_transf_1    2 fvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe.......................................... 53  
                     +vf+GqGsQ++GMGm+L+++s+++++v++rad++f ++yg+s+ ++++nnp+                                          
     KKY19773.1 1691 YVFTGQGSQEQGMGMDLYNSSPVAKDVWDRADRHFLENYGLSIIHIVKNNPKeltvhfggpkgkairqnyvsmtfetinadgsvksekifkdid 1784
                     9********************************************************************************************* PP

                     ............TGGGSHHHHHHHHHHHHHHHHHHHHHTT..-TTSEEEE-TTHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEEC CS
  Acyl_transf_1   54 ............glldaiqfvqpaLaavqialaellkskG..vrpaavvGHSlGElAaavvagalsseeallavvlrsrlmmqlagpgdmaave 133 
                                 gll+a+qf+qpaL+++++a++e++++kG  +r   ++GHSlGE++a+++ + ++++e+l++vv++++l+mq+a+++d+ +++
     KKY19773.1 1785 ettssytykspsGLLSATQFTQPALTLMEKAAFEDMRAKGlvQRSSSFAGHSLGEYSALASIAEVMPIESLVSVVFYRGLTMQVAVERDEQGRS 1878
                     *****************************************9999************************************************* PP

                     S.HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHH CS
  Acyl_transf_1  134 laeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalvenvnvavhspqvdaiadalasaladiaprkpkvakisstsldes 227 
                     +             + ++a +p+r+  ++s++al+++v++v++ + g+l e+vn++v + q+++++d +a+++++++++  k++ki++ +l ++
     KKY19773.1 1879 N-------------YSMAAVNPSRISKTFSEDALQYVVNNVAETT-GWLLEIVNYNVANMQYVCAGDLRALDTMTNVLNVLKLQKIDIQTLMQQ 1958
                     *.............****************************999.****************************************99888777 PP

                     .....HHHCHHHHHHHHHHHCHCCHCCHHTTS.SSECC-CCEECSSSSCCHCCCCCCCHH.......GGG-TCCCCCCTEETTSS-..HHHCHH CS
  Acyl_transf_1  228 .....serelsaeywvanlrspvrfaeavlsa.aetiplvfveispHslllaalektlks.......aedvksatlvGklkrdltd..flvtfl 306 
                          ++++l++++++       ++++++l++ +++ipl+++++++Hs+ l+ ++k++++       +  + + +lvGk+++++t+  f   ++
     KKY19773.1 1959 msledVKEHLVEIIKECAAETEKKPKPLELQRgFAVIPLAGIDVPFHSTFLRSGVKPFRNfllkkinKTTIDPSKLVGKYIPNVTAkpFEISKE 2052
                     7999999*************************************************************************************** PP

                     HHHHHHHHCT- CS
  Acyl_transf_1  307 yllakahltgs 317 
                     y+ ++++lt s
     KKY19773.1 2053 YFEEVYKLTNS 2063
                     *******9976 PP

>> FAS_meander  Fatty acid synthase meander beta sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.8   0.0   7.3e-58   1.4e-54       2     146 .]    1151    1295 ..    1150    1295 .. 0.99

  Alignments for each domain:
  == domain 1  score: 183.8 bits;  conditional E-value: 7.3e-58
  FAS_meander    2 selpseeewlellageelsWlralltsetivqgkklveNPlrrllaprkgqlveieeadspektvvtvkeakesgelkkaveiklsedkeIsvtli 97  
                   +e+p+ e+w+ +lag+++sW++a++t+++++qg+++++NP+rr+lap +g++vei+ +++p+kt+++vke+++sg+l+++++i+ s++keI+++++
   KKY19773.1 1151 AEIPDVEAWMTMLAGKTYSWRHAMFTADVFIQGQRFQSNPMRRILAPVRGMYVEIAYPEEPNKTIISVKEPSQSGKLVQTLQIRWSGNKEIAMDMF 1246
                   689********************************************************************************************* PP

  FAS_meander   98 eertaegesvpLeleFeYkpetglapIhEvmegrndrikeFYwklWfge 146 
                   e+rtaeg +v+L+++F+Y+petg+apI+EvmegrndrikeFY++lWf e
   KKY19773.1 1247 EHRTAEGGPVALSFKFKYHPETGYAPIREVMEGRNDRIKEFYYRLWFNE 1295
                   ***********************************************75 PP

>> FAS_N  N-terminal domain in fatty acid synthase subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2   0.0   2.7e-42   5.4e-39       2     128 ..      21     145 ..      20     146 .. 0.95
   2 ?    3.1   0.0     0.044        88      27     125 ..     904    1003 ..     897    1007 .. 0.79

  Alignments for each domain:
  == domain 1  score: 133.2 bits;  conditional E-value: 2.7e-42
       FAS_N   2 lrplslthgslevsilvpaslylaaeqLrdeFtatlvapseeleqeeeplseieLlakFLgyvaksiestesstsqfedvlklvleefessyLkkndih 100
                 lrpl+l+hgsle+s+l+p+s++++a qL+d Ft tl++p++el+q++ep+s+ eL+a+++g+va +i++++++++ + +v+k+vl+efe++++++nd+h
  KKY19773.1  21 LRPLTLNHGSLEYSFLIPTSHHFQASQLKDGFTSTLPEPTDELAQDDEPSSVAELVARYIGFVAAQIDEDDDAQGLYIEVVKTVLNEFERAFMHANDVH 119
                 7*******************************************************************999**************************** PP

       FAS_N 101 alvsnLpsettllakkeviraYykalal 128
                 al+  Lp  + + +k +v+++Yy+++a+
  KKY19773.1 120 ALAATLP--GIAAKKLVVVQSYYAGRAA 145
                 *******..444555569******9987 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.044
       FAS_N   27 eqLrdeFtatlvaps.eeleqeeeplseieLlakFLgyvaksiestesstsqfedvlklvleefessyLkkndihalvsnLpse.ttllakkevira 121 
                   +L+d+F++    ++  +   + e+++  e + +  ++   + +s    +++++++    ++ +e+++ ++    +lv+n        +  +++++a
  KKY19773.1  904 RKLNDDFQKVWFGRNsAGKTVDLEDMTYAEVTRRMVELMYVKHQSR-WIDQSLKKLTVDFVHRLEERFTNNRGKASLVQNYSDLdNPYPTVDNILAA 999 
                  689******76655438888999**********9966555544544.567999999999**********9999999999966445778889999999 PP

       FAS_N  122 Yyka 125 
                  Y +a
  KKY19773.1 1000 YPEA 1003
                  9776 PP

>> SAT  Starter unit:ACP transacylase in aflatoxin biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2   0.0   3.1e-42   6.1e-39       2     238 ..     171     423 ..     170     425 .. 0.85
   2 ?   -2.3   0.1       1.5   2.9e+03     102     185 ..    1827    1907 ..    1793    1912 .. 0.61

  Alignments for each domain:
  == domain 1  score: 134.2 bits;  conditional E-value: 3.1e-42
         SAT   2 lFGDq.tad.vlpeLrkLlqakenplLrsFLekasealraeisrlpaaerkslp...rf.tslqellerysesglkspalssallciaqlaqfivy... 91 
                 +FG+q + + +++eLr+++  ++ p  ++ L ++s+ l + +sr p+ae++ +p   ++ ++l ++ +++++++l s+++s++l++++qla++ v+   
  KKY19773.1 171 IFGGQgNIEeYFEELREVY--NTYPSFTEDLITSSAELLHALSRDPKAEKQ-YPkglDVmKWLNDPDAQPDTEYLVSAPVSLPLIGLVQLAHYQVTcra 266
                 7****97777*********..555666655555666666777777766665.55589666************************************554 PP

         SAT  92 leenpeeypspestylvGlCtGllaAaavacskslseLvplaveavrvafrlGlevar...........vaarle..egsssssesWslavtglseeel 177
                 l+++p e+ ++  ++ +G+++G++ Aaa+a+ +s++++ ++a+ a++++f++G+++++            ++++e  egs     +++l++++ls+ ++
  KKY19773.1 267 LGQTPGEVRER-FSGTTGHSQGIVTAAAIATGTSWESFAKAARSAITMLFWIGMRSQQayprtslapsvLQDSIEngEGS----PTPMLSIRDLSRTQV 360
                 45555544433.67********************************************9988888666666666644444....55************* PP

         SAT 178 ekalaefneekglppasrvyisavssss.vtisGpPstl...eallksskakkkkkksklpiyap 238
                 +++++++n++ +  +++++ is+v+s + ++++GpP +l   +  l++ ka + ++++++p +++
  KKY19773.1 361 QEHIDATNQHLP--EERHIAISLVNSARnFVVTGPPISLyglNLRLRKVKAPTGLDQNRIPHTER 423
                 *********998..88**********999***********99*******************9876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.5
         SAT  102 pestylvGlCtGllaAaavacskslseLvplaveavrvafrlGlevarvaarle...egsssssesWslavtglseeelekalaefn 185 
                  + s+  +G++ G  +A a     s++e++p+    v v+f  Gl ++ + +r e   ++ s +  ++s +    se++l+ +++++ 
  KKY19773.1 1827 QRSSSFAGHSLGEYSALA-----SIAEVMPI-ESLVSVVFYRGLTMQVAVERDEqgrSNYSMAAVNPSRISKTFSEDALQYVVNNVA 1907
                  446677777777777765.....56666665.3567778888888877655555222333333334555555566666666666555 PP

>> MaoC_dehydratas  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.4   4.8e+03      88     114 ..    1388    1414 ..    1386    1418 .. 0.77
   2 !  127.4   0.0     1e-40   2.1e-37       2     121 ..    1546    1674 ..    1545    1676 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.4
                       --BTTCEEEEEEEEEEEEEEEEEEEEE CS
  MaoC_dehydratas   88 pVlpgdtlkvelevvgkrdvrktkkve 114 
                       p  +gd+++++++ +++++ +  k ve
       KKY19773.1 1388 PLKVGDEVHTSAQINAVINQDSGKMVE 1414
                       7789*********99977776555554 PP

  == domain 2  score: 127.4 bits;  conditional E-value: 1e-40
                       TCCCTTSEEEEEEEEEEE.........HHHHHHHHHHHT---GGGT-HHHHHHTTTSSSB--HHHHHHHHHHHHHHHHSTTEGGGEEEEEEE CS
  MaoC_dehydratas    2 fqnaigekvetekeitvt.........eadialyalvsgDlnpiHvdpefAkkagfggpIahGmltlaivaklveeelgdnvvarvgeikvr 84  
                       f+++i+++v++e++i+++         +a++++y +vsgD+npiHv++ fA++a+++g+I+hGm+++a+v++lve+++++n++ rv+++++ 
       KKY19773.1 1546 FGSSIEQPVNFENPIPLSgktplslkaPASNETYGRVSGDYNPIHVSRIFAAYANLPGTITHGMYSSAAVRSLVETWAAENNIGRVRSFHAD 1637
                       67889*************************************************************************************** PP

                       E-S--BTTCEEEEEEEEEEEEEEEEEEEEEEEEEEEE CS
  MaoC_dehydratas   85 FtkpVlpgdtlkvelevvgkrdvrktkkvevtkevte 121 
                        +++Vlp+d+++v+le+vg+ ++rk++kv +++++te
       KKY19773.1 1638 LVGMVLPNDEIDVKLEHVGMVAGRKIIKVVTSNKETE 1674
                       *********************************9998 PP

>> MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0   6.4e-27   1.3e-23       6     131 ..    1307    1428 ..    1303    1429 .. 0.93

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 6.4e-27
  MaoC_dehydrat_N    6 efepvkaevereavrefakavgetnpayldeeaaraagyrsliaPptflivlatkap..ell.ealgidlsrllhgeqefey...hepiraG 91  
                        f++ k +v++++v +f++avg+t +a++d+  +      ++ aP++f+iv+++ka    ++ +a+++dl +l+h+++ef++   ++p+++G
       KKY19773.1 1307 TFDGGKSVVTAQDVADFVHAVGNTGEAFVDRPGK------EVYAPMDFAIVVGWKAItkPIFpRAIDGDLLKLVHLSNEFRMlpgAQPLKVG 1392
                       6789999**************************8......9*************886664556999******************9******* PP

  MaoC_dehydrat_N   92 DelttesriadvydkkgvGalefivvettvtnqrGepvat 131 
                       De+ t+++i++v ++   +++++++v+ t+t ++G+pv++
       KKY19773.1 1393 DEVHTSAQINAVINQ---DSGKMVEVCGTIT-RSGRPVME 1428
                       **************9...68***********.******98 PP

>> MCRS_N  N-terminal region of micro-spherule protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1    0.0001       0.2      33     107 ..     929    1002 ..     927    1025 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0001
      MCRS_N   33 FtlkeiqeRWyalLydptiskiavaalrnLhpevvasvqkkalfskeeeellatiksteqptlekfqeLldknaa 107 
                   t  e+++R   l+y ++ s+   ++l++L ++ v+  +++ +  + + +l+++ +  ++p   + +++l+ +++
  KKY19773.1  929 MTYAEVTRRMVELMYVKHQSRWIDQSLKKLTVDFVHRLEERFTNNRGKASLVQNYSDLDNPY-PTVDNILAAYPE 1002
                  5889*************************************999999999999999887776.556666665555 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.3    0.0013       2.7       4     245 ..     594     836 ..     591     856 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0013
         NMO   4 ltellkikppvvqpgmggiska.rLaaavsnaGgLGvla.sgyltaDrlakeirkvkaltdk..Pfgvnlflpkkdaadra.....ekykkeleeaale 93 
                 ++ ll+  ppv+ +gm   +++ +++aa+ naG    la +gy  a  + ++++k+++++     + vnl + ++ a+ ++     +  ++ ++   ++
  KKY19773.1 594 MSRLLG-VPPVMVAGMTPSTVPwDFIAATMNAGYQIELAgGGYYNAKTMTEALTKIEKAIPPgrGITVNLIYVNPRAMAWQipligQLRADGVP--IEG 689
                 555665.456666666555544478888888887777776788888888888888888775334788888888888888854333222222222..344 PP

         NMO  94 lnieegvrfyrkvevvldekvevvsfgfglpteevvarlkeagvvliptissvkearkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldav 192
                 l i  gv+        + e ++  ++++g +        ++a+ ++i ++ +           + +l  +G+ +GGh   +e  ++  +++  ++++  
  KKY19773.1 690 LTIGAGVP--------SIEVANEYITTLGIKHIAFKPGSNDAIQAVINIAQANPGF-------PVILQWTGGRGGGHHS-FEDFHQPMLQMYGRIRKCD 772
                 44555555........3333444455555552222222233333333322222222.......3333447999999998.5555578889999999999 PP

         NMO 193 diPviAaGGiidrrgvaaaLa......lGA.....sgvqigtrfLltkesdakdahkkklleak 245
                 +i ++A  G+  +++    L+       G       g   g+r++++ke+ ++  +kk++++a+
  KKY19773.1 773 NIVLVAGSGFGGAEDTYPYLTgtwsarFGYppmpfDGCMFGSRMMVAKECHTSYNAKKAIVDAE 836
                 9999999999999888877752222222212233358889999999999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2098 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      606  (0.0338); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.21u 0.34s 00:00:01.55 Elapsed: 00:00:00.54
# Mc/sec: 11633.45
//
Query:       KKY19774.1  [L=398]
Description: hypothetical protein UCRPC4_g04381 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 2472.45
//
Query:       KKY19775.1  [L=139]
Description: putative cytochrome c oxidase-assembly factor cox16 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-28   99.7   0.1    1.3e-28   99.3   0.1    1.2  1  COX16     Cytochrome c oxidase assembly protein COX16
  ------ inclusion threshold ------
      0.075   13.0   0.0       0.12   12.4   0.0    1.3  1  OppC_N    N-terminal TM domain of oligopeptide transport perm


Domain annotation for each model (and alignments):
>> COX16  Cytochrome c oxidase assembly protein COX16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.1   1.5e-32   1.3e-28       2      79 .]      41     133 ..      40     133 .. 0.91

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 1.5e-32
       COX16   2 lfGlPflllivgGsfgLteftqlryevrdrkvkelskeealelk........kkrrkv........dleeeyerlqakldlddWenkRvpRpke 79 
                 lfGlPf++++v++sf+Lt++t+lrye +drk+ elsk+ea+el+        ++rr+v         ++eey+rl+ak d+ddW++kRv+R+k+
  KKY19775.1  41 LFGLPFITIMVAASFLLTPATALRYEIHDRKHTELSKTEAMELGlksegvnyNPRRRVidpnrakeIEREEYYRLMAK-DIDDWDQKRVQRFKG 133
                 69**************************************************55555556666655899********9.************997 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.3e-05      0.12       9      34 ..      33      59 ..      27      78 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.3e-05
      OppC_N  9 rFkrNklAvvglvilllllliaif.aP 34
                ++ r++ A++gl ++ ++++++++  P
  KKY19775.1 33 SLARHPFALFGLPFITIMVAASFLlTP 59
                688******************988334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.31s 00:00:00.81 Elapsed: 00:00:00.51
# Mc/sec: 824.86
//
Query:       KKY19776.1  [L=1087]
Description: putative nuclear pore protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.4e-193  644.0   0.3   3.7e-193  643.4   0.3    1.2  1  Nic96           Nup93/Nic96
    3.1e-07   31.1  46.3      1e-05   26.3  27.4    3.5  3  Nucleoporin_FG  Nucleoporin FG repeat region
  ------ inclusion threshold ------
      0.021   14.4   0.1      0.042   13.4   0.1    1.4  1  BID             BH3 interacting domain (BID)
       0.21   11.8   1.5       0.65   10.3   1.5    1.8  1  DUF2644         Protein of unknown function (DUF2644)


Domain annotation for each model (and alignments):
>> Nic96  Nup93/Nic96
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  643.4   0.3  8.2e-197  3.7e-193       6     620 ..     405    1069 ..     401    1070 .. 0.95

  Alignments for each domain:
  == domain 1  score: 643.4 bits;  conditional E-value: 8.2e-197
                  HHHHHHHHHHH...T....TTTS--.-..................HHHHHHHHHHHHHHHHHHHHHCC....CTTSSSS-HHHHHHHHHHCTTBESS CS
       Nic96    6 kqlleaWkllkelvgekpevkerefak........srqsaelrkrivegarryLEkqfleyveeliaknpreaqlggvpsvvnkvraFvrvrlakkn 94  
                  +ql++a+++l e+v+e++ ++er+ a+        s ++++lrk+i++g+r yLEk+f++++e+l++knpreaqlgg p+v+nk+ra++rvr a+k+
  KKY19776.1  405 RQLVQAYQALIEIVNESNPPSERSLASayldeqqnSPRAVKLRKQILDGSRAYLEKSFYRELESLVEKNPREAQLGGRPTVTNKIRAYIRVRSARKD 501 
                  79***************99999998889999999999************************************************************ PP

                  SCBSSTT--EE..TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT.-TTS.-HHHHH CS
       Nic96   95 laedaglldev..ngeplWaliyylLRaGdldeAlevvnenkeafrkldrsfaaylkayassedrrlpseleerlkleYnqrirnaseds.Dpykka 188 
                  la+d ++l+++  +g+++W l+++lLR+G ++eA+ +vn+   af+++d+ f+ayl+aya+s+drrl+++l+e ++ eY+qr+r a+ ++ Dpy++a
  KKY19776.1  502 LAPDGTELQQLgdDGDYCWILVFFLLRCGFVKEAAGYVNDD-PAFQSTDKRFVAYLTAYANSPDRRLNRKLQEMINGEYQQRMRIAPDNTiDPYRMA 597 
                  ***********855************************776.9****************************************************** PP

                  HHHHHHT--CCC-S-T.TC--SHHHHHHHHHHH---TTSSSSS.SS----HHHHHHHHHHH-GGGCTT-........HHHHHHHTT-HHHHHHHHHT CS
       Nic96  189 vYkiigrcdlsrknlhqevaktieDwlWlqLslireddrdsselasekytledLqklilkyGeshFnas...eqpllYfqvllLtgqFEaAieylyr 282 
                  +Y+i+grcdl++++++  +a+++eDw+Wlq++l+re dr ++e+a + ++le++ +++ ++Ge+hF+++     + ++f++++++g++E A++yl++
  KKY19776.1  598 CYQIVGRCDLRNRRIE-GLAQSVEDWIWLQFNLARELDR-TEEVAGDIFGLEQICETVRDIGERHFKGQessTGFATFFFMQIMAGMYEYAVQYLHS 692 
                  ****************.**********************.899***********************8887778999********************* PP

                  T-HHHHHHHHHHHHHTT------.....------..-................------HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS-S.....C CS
       Nic96  283 esrvdAVHlAIaLaeygLLrvsdskvs.eellsvete................skrrinfarligqYtrkfeatdprealeYlylirllkdleg..k 360 
                  +++v+AVH+AIaL++ygLLrvsd+ v+ ++l  ++t                   ++in++ li  Yt++ ++++ ++a++Yl l++l++dl++  +
  KKY19776.1  693 YAPVSAVHFAIALNYYGLLRVSDFAVAgNDLRKFSTFmikarltecevttttkGLPQINLVPLIAFYTSAWRTANCEAAVDYLCLLCLNSDLPAlgE 789 
                  *********************9999988555555444555778999999999988*************************************99888 PP

                  CHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       Nic96  361 eqrelchealrelvletrefalLLGdirsdGtripGlieerlkliklddeeeflkkiieqaAreaeekgrledAilLydlageydkvlellnrlLsq 457 
                  + +++che+lrel+letrefa+LLGdirsdGtri+G+ie+r kl+k++++++fl+++++qaA+ a+e+g+++dA lLy+la+++d v e+l+r+L++
  KKY19776.1  790 AYTTYCHESLRELCLETREFAKLLGDIRSDGTRISGAIERRAKLVKIENRQDFLQAVTRQAAQIADERGQIADAALLYHLAEDFDSVAEVLSRALAE 886 
                  889********************************************************************************************** PP

                  HHHC.........SSSSSSSST....TT..........TSHHHHHHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH CS
       Nic96  458 vlst.........qplkprsererlqqe..........edpveLaekileryesnakisekvsaknretcelLldlleifdlyeagqweealdeiek 535 
                  +++          qplkpr++ e  + +          +  ++La++il +y++na +++++++ +r+tc  L++++e+++++ ag++ +ald+i++
  KKY19776.1  887 AVTLdledtpaslQPLKPRKDLEPGDAQansslsltsaDTTYQLAQNILGLYNANAVYYNQIRPVHRQTCGSLMHMMEARNMILAGRYMDALDRINS 983 
                  **9999****999777777766555555677888999999********************************************************* PP

                  TT-S--.-HHH...HHHHHHCGCCS-HHHHTTHHHHHHHHHHHHHHHHHHHHSTT---TTHHHHHHHHHHHHHHHHHHHHHGCCCS CS
       Nic96  536 ldllPl.aegdleevrekveefkslseevakvipdlLlatmtclskqyeqlknkqfeseskedkleelrqkakalmtfagmikyrm 620 
                  l +lPl a g+ ++vr +v++f  l++ +a++  +l+++++tc+ k++eql++ ++e++++++   +l ++a++l+ f+g+ik+r+
  KKY19776.1  984 LMILPLlAGGNKAAVRTAVSNFAVLPQLLARTTGSLIVWSITCIAKEREQLAQAKYETTERNNVKAQLASMASDLVDFSGLIKFRL 1069
                  ***************************************************99999988888899*******************97 PP

>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   7.3    0.0022       9.6      45      82 ..       2      42 ..       1      47 [. 0.49
   2 !   26.3  27.4   2.3e-09     1e-05       2      85 ..      33     115 ..      32     121 .. 0.78
   3 !    7.9   1.3    0.0013       5.7       6      62 ..     289     325 ..     270     361 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0022
  Nucleoporin_FG 45 fgatsqtaasgglFGstnattqtta...tgglFGstaataq 82
                    fg+++q+a +++lFG+  a+t++ +     ++F s+++ +q
      KKY19776.1  2 FGQSTQPAGGSSLFGNLGANTTADQpakRRSIFDSSTTGSQ 42
                    56666666666666555555554444445555554444432 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 2.3e-09
  Nucleoporin_FG   2 lFGaaatstsgglFGststtatstgglFG...asstatatasggglfgatsqtaasgglFGstnattqttatgglFGstaataqq...tt 85 
                     +F  ++t+ s+ + Gs++ +   t+glFG   +++t++ +a g++lfg+ +++a+sgglFG+t++++++  +++lFGst+a+  +   ++
      KKY19776.1  33 IFD-SSTTGSQPTMGSATPA---TSGLFGglgSNNTSQPAAPGASLFGG-TSAAPSGGLFGQTSSQPAA--GSSLFGSTTANPPAggsQA 115
                     677.7777788888888888...9*******6555555555555*****.89************99887..9*****9999986666443 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0013
  Nucleoporin_FG   6 aatstsgglFGststtatstgglFGasstatatasggglfgatsqtaasgglFGstn 62 
                     a+ s+sgg FG ts +   +++                +f + s++ ++ ++FG + 
      KKY19776.1 289 AQGSPSGGCFGRTSRK---GKN----------------IFAE-SAKGSTRSVFGRSG 325
                     2233333333333333...333................3333.33333334443333 PP

>> BID  BH3 interacting domain (BID)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   9.4e-06     0.042      50     131 ..     810     889 ..     785     903 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.4e-06
                 SXS.XSSXXX-S-S---TTT-ST.TS-HCHHHHHHHHHHHHHHHHHHHHCCSSTTSHHHHHHHHHCHCCCCCCCCHHHHHHHH CS
         BID  50 edkddeLqtDGnrashlqagrle.adsesqeevirniarqLaqiGDeldksiqpklvneLaaqfvneslseedrrkkLaaale 131
                 ++  +++  DG r s   + r++    e++++ ++ + rq aqi De  +   + l+ +La+ f       e  ++ La+a+ 
  KKY19776.1 810 AKLLGDIRSDGTRISGAIERRAKlVKIENRQDFLQAVTRQAAQIADERGQIADAALLYHLAEDFDS---VAEVLSRALAEAVT 889
                 444477899******966666552678999*********************************976...45666666777665 PP

>> DUF2644  Protein of unknown function (DUF2644)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.5   0.00015      0.65       8      50 ..     663     705 ..     661     709 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00015
     DUF2644   8 GrlSTTafiQFfgalllagiLvyavyldrpyveelfmtfaifc 50 
                 G+ S T+f  Ff + ++ag+  yav + ++y++   + fai++
  KKY19776.1 663 GQESSTGFATFFFMQIMAGMYEYAVQYLHSYAPVSAVHFAIAL 705
                 888******************************9999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1087 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.49
# Mc/sec: 6682.48
//
Query:       KKY19777.1  [L=323]
Description: putative 2og-fe oxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-14   53.6   0.0    5.1e-14   52.6   0.0    1.5  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
    2.1e-12   47.8   0.0    3.1e-12   47.3   0.0    1.2  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   5.6e-18   5.1e-14       5     101 .]     178     274 ..     174     274 .. 0.86

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 5.6e-18
                   EEEEEE-S---------EEEEEESSSEEEEEEE-TT---EEEETEEEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTGS....EEEEEE CS
  2OG-FeII_Oxy   5 lvlnyypphpdpevilglgahtdaslltillqddvgglevfkdgkwlrvppvdnslivniGdallflsngryksvlHrVlpvneger....Rvsiay 97 
                   ++ +++ ph   +  +gl  htd + +til++   ggl++++ g+w +++p  n  i+n Gda   ++ng + s++HrV p  +ge+    R+si y
    KKY19777.1 178 RLTRKF-PHEGED-AIGLPSHTDFGSITILFNWL-GGLQIQHRGEWKYIQPLSNHAIINLGDATVRFTNGALLSAKHRVVPA-PGEQanvdRYSIVY 270
                   555664.676666.8*************999765.*****999*************************************44.44444899****** PP

                   EE-- CS
  2OG-FeII_Oxy  98 fiep 101
                   f++p
    KKY19777.1 271 FVRP 274
                   *986 PP

>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   3.4e-16   3.1e-12      19     101 ..      26     113 ..       9     131 .. 0.84

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 3.4e-16
      DIOX_N  19 aeqlreAcrevGffyvvnhgvp.eelidelfeaareFFalPeeeKekl..akspsfrGysrlgeektdg..kkldwkesfdlgtelpe 101
                 a+++ eAc++ Gffy+  +g p  e+++ l+e+a + F+ P eeK+k+   + +s  Gy+++g+ k      ++d  e+f+++t+++ 
  KKY19777.1  26 ADKVFEACSTDGFFYLDLTGHPiLEQAEGLRELAVKAFDHPVEEKNKYhlVRGQSMAGYKAAGTRKQTDstLRPDTTEFFNIYTDHAH 113
                 78999***********8888775689**********************999999********9998877799************9763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2191.46
//
Query:       KKY19778.1  [L=754]
Description: putativedimethylguanosine trna methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.6e-102  342.8   0.0    2.4e-89  300.2   0.0    2.2  2  TRM       N2,N2-dimethylguanosine tRNA methyltransferase
    4.3e-07   29.9   0.0    8.6e-07   28.9   0.0    1.5  1  Met_10    Met-10+ like-protein


Domain annotation for each model (and alignments):
>> TRM  N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.2   0.0   2.6e-93   2.4e-89      16     320 ..      52     514 ..      38     538 .. 0.90
   2 !   40.6   0.0     2e-14   1.8e-10     318     376 .]     546     604 ..     532     604 .. 0.93

  Alignments for each domain:
  == domain 1  score: 300.2 bits;  conditional E-value: 2.6e-93
                 TT--SS--GGGHHHHHHHHHH........HHHHHHHH-S-........................................................... CS
         TRM  16 kkeeVFYNPvqefnRDlsvlvi....r.qlellkkklgek........................................................... 50 
                   ++VFYN +q+fnRDl++l+i       l  ++ ++++k                                                           
  KKY19778.1  52 GVQTVFYNKIQQFNRDLTILAIlvhgEgVLVEKRARIQRKaktprkqravreakhasadastdkarddsgvalkikddpgnsrkrkleavhegeqghie 150
                 4578*****************966552233333333333388889999*************************************************** PP

                 .........................................................EEEEESS-TTSHHHHHHHHH-S-EEEEEEE-S-HHHHHHHHH CS
         TRM  51 .........................................................ikvldaLsasGlRaiRfalEvpgvkevlaNDisekAvelike 92 
                                                                           ++ldaLsa+GlR++R+a+E+p + +++aND++++Av+ i+ 
  KKY19778.1 151 nceqgaakkarnrdrpdiaalegdnpdptesgvhneaetslddakvgnsdqkqekirYTILDALSATGLRSLRYAKEIPFATRIVANDLLPEAVKAIET 249
                 *******************************************************999***************************************** PP

                 HHHHTT--GGEEEE-S-HHHHHC............--SS-EEEEEE--SS--GGGHHHHHHHEEEEEEEEEEE--HHHHTT.SSHHHHHHHHSSB---S CS
         TRM  93 NvklneveeivvineddAnvlla............ekkkrfdviDlDPfGspapfldsavqsvkekglLlvTaTDtavLaG.aspekclrkYgavalks 178
                 N+k+n+v+++v+++ ddA+v+++            +  +rfdviDlDP+G++apf d+ +q+++++glL+vT+TD  v a   +pek ++ Y ++++k 
  KKY19778.1 250 NIKYNQVDHVVTPHLDDARVFMYskvgnetntrdeTYVHRFDVIDLDPYGTAAPFFDASLQALQDGGLLCVTCTDAGVFASnGYPEKAYSLYAGTTMKG 348
                 ***********************99999887766555679****************************************989**************** PP

                 TTHHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEETTEEEEEEEEEE-HHHHHHHHTTEEEEEEE.TTT...........--EEEE--GGG--....... CS
         TRM 179 elcHEvalRillkavareaakYekavepllslsadfYvrvfvkvktgaakvkkvleklglvlhC.sgC...........lseekvkglakfk....... 258
                    HE +lR++l+a+  +aakY  a+epllsls+dfY r+f++v++ +++vk +   +++ ++C sgC           + ++ ++g + f+       
  KKY19778.1 349 VHSHEAGLRLILHAISLSAAKYGIAIEPLLSLSIDFYARLFIRVHRRPREVKLLSGTSMIAYNCdSGCsawttqsigrsVARKAKNGEQFFHhgyaqgp 447
                 ****************************************************************77899999888777744455555555557888899 PP

                 ...SB-TTT-SBEEEEEEEE-S-S--HHHHHHHHHHHCT..-TTS..-HHHHHHHHHHHHHHS--SS CS
         TRM 259 ...aecehcgaklhlaGPlwlgplkdkefveevleeaekekeeel..kkrvkklLklikeElldapl 320
                     +c hcg k+h+aGP+w+gpl++  f+  +l+++ + +++ +    r++++Lk++ eE + + +
  KKY19778.1 448 samPNCDHCGFKTHMAGPMWAGPLHNPFFIRGILAKLPSLDRSVYgtFDRIEGMLKTAIEEDMSSTI 514
                 999************************************9988888889*********999766555 PP

  == domain 2  score: 40.6 bits;  conditional E-value: 2e-14
                 -SS-EEHHHHHHHHT-SS---HHHHHHH....TT-EE-TTSTTEEE-SS-HHHHHHHHH CS
         TRM 318 aplyydlsqlasvlklsvpplkkvvsalkelgfevsrtHakpkaikTnapleavvevlr 376
                  p+++    la+vl++ +p+  ++++al +lg++v+r+H+k  ++kTnap+++++e++r
  KKY19778.1 546 MPFFFIPTFLAKVLHTITPSEARLRAALISLGYKVTRSHCKAGSFKTNAPWSVIWEIFR 604
                 69999***************************************************986 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   9.6e-11   8.6e-07     124     198 ..     231     319 ..     202     320 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 9.6e-11
                 SSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EE.............EEE.E--TTTGGGGHHHHHHHEEEEEEEE CS
      Met_10 124 akrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqlad.............rvv.mnlpksaieFldkvlaalkdggvih 198
                 a r++a+dl Pe+vk ++ nik N+v++vv+p l D+r ++ +++ +              v+ ++   +a  F d+ l+al+dgg+ +
  KKY19778.1 231 ATRIVANDLLPEAVKAIETNIKYNQVDHVVTPHLDDARVFMYSKVGNetntrdetyvhrfDVIdLDPYGTAAPFFDASLQALQDGGLLC 319
                 679*************************************9988888788888888886644424455678888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.50
# Mc/sec: 4553.19
//
Query:       KKY19779.1  [L=639]
Description: putative eukaryotic aspartyl protease family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-09   37.6   0.0    2.6e-09   36.9   0.0    1.3  1  Asp       Eukaryotic aspartyl protease
  ------ inclusion threshold ------
      0.012   15.2   0.2      0.021   14.4   0.2    1.3  1  DUF4328   Domain of unknown function (DUF4328)


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   2.9e-13   2.6e-09       5     315 .]      49     401 ..      47     401 .. 0.74

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 2.9e-13
                 EEEETTTTEEEEEEEETT--SEEEEBTT.ESTSHCHHTS..S-B-GGG-TT-EEEEEEEEEECTTS.EEEE..EEEEEEEEE.TTEEEEEEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx.xxxx..xxxxxxxxx.xxxxxxxxxxxxxxxx RF
         Asp   5 eisiGtpeqkftvifDTGSsdlWVpssk.ckkssacksh..stydpskSstykkngkslsisYGdg.svsG..flsqdtvkv.ggltvknqefgeatke 96 
                 +i +G+p q   v+    S +lWV+  + c+ s+ c      ++d+s+S t ++ g s+++ + +   v+G  +++ d ++  +g tv +q +g ++++
  KKY19779.1  49 TILVGKPAQWVYVLPNILSNELWVIGPSgCNDSTTCIDArgGVFDSSQSKTWQAWG-SFELVFNQElGVTGeaYYGSDRISPnQGPTVSDQIIGIVNNT 146
                 6899********************9855499999*97652268*********9887.6999999988999933566788885258999******99999 PP

                 SSHHHTTSSSSEEEE-S-GGGSCGGSCCH..HHHHHHTTSSSSSEEEEEE-S...TTSSEEEEEESSEEGGGEEEEEEEEEESSTSSTEEEEEEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp  97 pgstflaakfdGiLGlgfkeisveeatpv..fdnlvsqglikepvfsvylnr...eeeeggeivfGgvDeskykGsltyvpvtskgywqielesvtvgg 190
                 +          G LGlg + +  + at       lv +g+i +  f+         ++   ++++Gg D  +y  + ++++++ ++   + l+++ v++
  KKY19779.1 147 QF-------YTGYLGLGVTGQVFGAATREtyLTSLVMAGVIPSYSFGYTAGAyyrLKRVPASLTLGGFDRVRYIPNDVTFSLDANARPVVALNQMLVTS 238
                 98.......68**********9999766542455*******9999986554444488999*************99999999998555555555555554 PP

                 EEE................EEEEEEEEE..EETTCSSEEEEHHHHHHHHHHHTTEEEET....................TCEEEEETTGGGGSEEEEEE CS
                 xxx................xxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxx RF
         Asp 191 ktv................lcssgcqai..lDtGTsllalptsivekiakaigakkses....................egeyvvdCdslsslpdisft 251
                 ++                 l+s++ +a+  +D+ T +l lp+++ +++a+a+g  ++e+                        ++  d+  s+++i++t
  KKY19779.1 239 TANlsthtgsgpnwtspltLSSESDAALfvIDSSTPFLWLPETVCDRFANAFGLFYNETlqlytyennvtsptelgnwnLTFTFTIADTPGSSKSINLT 337
                 444334445556667777655566666577**************************9996777665555555555555322222222333344444444 PP

                 ETTEEEEEEGGGGEEEESSSTTSEEEESEEECCTSSSEEEEHHHHTTEEEEEETTTTEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 252 iggakitvpvselvlkeeeseesqCilglvseeegdlwiLGdvFlrsayvvfdldnnrvglAea 315
                 +    +++++s+     +++++   ++ l    ++ ++ +G +Fl++ y   d++  + +lA+a
  KKY19779.1 338 LPFDAFNLQLSSPFPGLNTTKSPLEYFPLRRAANSTQYTIGRLFLQETYLTVDYERGNFSLAQA 401
                 444444444444444444444455555568999999*******************999999985 PP

>> DUF4328  Domain of unknown function (DUF4328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   2.3e-06     0.021      17      49 ..     438     470 ..     427     482 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.3e-06
     DUF4328  17 velagllalllllaaavvflvWlrraranaeal 49 
                  ++++++ +ll++   ++fl+W+rr+++n++  
  KKY19779.1 438 IGVGAVAGFLLFVCLLILFLRWFRRRNNNLQST 470
                 578899999********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 3848.25
//
Query:       KKY19780.1  [L=376]
Description: putative fatty acylhydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-45  155.1   0.0    2.8e-38  132.1   0.1    2.0  2  COesterase     Carboxylesterase family
    1.7e-05   24.8   0.0    5.9e-05   23.0   0.0    1.8  1  Abhydrolase_3  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.1   0.1   3.2e-42   2.8e-38     113     321 ..       3     216 ..       1     226 [. 0.89
   2 !   21.1   0.0   1.3e-08   0.00012     390     469 ..     240     321 ..     232     356 .. 0.81

  Alignments for each domain:
  == domain 1  score: 132.1 bits;  conditional E-value: 3.2e-42
                 -STTTS-BGCG...S-THHHHHHHTSEEEEE----HHHHH-B-SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSGGG CS
  COesterase 113 Gggfqtgsase...ydgsaLaaegnvivVtinYRlGvlGFlstgdeeapGNvGllDqvlALrWVkenIasFGGdpervtlfGesAGaasvsllllspls 208
                 Gggf tg  +     + s   ++++ ivVtinYR++++G+        + N+G+lDq++AL+WV++n+a+FGGdp+ + l+G+sAG+ s+++++   ++
  KKY19780.1   3 GGGFSTGGVNIkwqLPTSWVDRTQEHIVVTINYRVNIFGWPNAR-GLKDQNLGILDQRMALEWVHTNVANFGGDPSAIILWGQSAGSQSADFHSYAYYK 100
                 999999999777667778888888*****************995.57899************************************************* PP

                 TTSBSEEEEES--TTSTTTSBSHHHHHHHHHHHHTTS.-CSSHHHHHHHHHCS-HHHHHHCCGGSSSSSSTTC-SSS-B--SSS.SSS-HHHHHHCGC. CS
  COesterase 209 rglfkraIlqSGsalspwaiqkkarkrakklakkvgc.kassskelveclrsksaeelldaqekaleasssklvsfaPvvdgdf.lpekPeellkseg. 304
                 +  ++ + +qSG+al++   ++ a+ +++ +ak+++c   +++k  ++c+r+ +   + +   +  + ++++ +sf  v d+++ +++ P+++   +  
  KKY19780.1 101 NPIVRGYFMQSGTALKSLNFKDTAQMNFTFVAKQFNCdFPADAKAELDCMRQVPFAMIENFIGQYSDNGTKPTLSFNVVPDEKIiFSDYPARAALGKVa 199
                 *************************************545677799*********99999999988899999999999999988356899977766447 PP

                 CSEEEEEEETTTTHHHH CS
  COesterase 305 kvplliGvnkdegllfl 321
                 k p++++  ++e + + 
  KKY19780.1 200 KAPIIVSNCANEVSALT 216
                 **********9988765 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 1.3e-08
                 THHHHHHHHHHHHHTT-SEEEEEEE--STTSSST.TTGSSBTTTTHHHHTTGGGTSGCS.S-HH.HHHHHHHHHHHHHHHHHH CS
  COesterase 390 fkapvlrtaklhasrgspvYlYsfdyrnssskkp.kwmgvvhgdeleyvfglpllekee.ftke.deklsrkmmtywtnFakt 469
                 +++p+ +t+ l+ +   pvY Y++  +  + + p +w g++h+++l++ fg++ l ++  +t++ + ++sr m + +  F+k 
  KKY19780.1 240 WICPAANTTILRNALDIPVYRYQNAGQYPNLN-PfAWLGAYHASDLPMNFGTYGLLTNLgNTTDfEIEVSRSMQEHILAFVKD 321
                 78999999999999999****99988775544.45****************99887777799999***************995 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   6.6e-09   5.9e-05       6      83 ..       3      89 ..       1     129 [. 0.85

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 6.6e-09
                   -STTTS--TTTTHHHHHHHHHHHT.SEEEEEE---T....TTS-....TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHH CS
  Abhydrolase_3  6 GGGfvlgsldthdalcrelakelg.avvvsvdYrlA....Pehp....fPaavedalaalrwlaeqawelgadpsrivlaGdSaGGn 83
                   GGGf +g+++ +++l ++ +++++  +vv ++Yr      P+++        + d   al+w++++ +++g dps i+l G+SaG +
     KKY19780.1  3 GGGFSTGGVNIKWQLPTSWVDRTQeHIVVTINYRVNifgwPNARglkdQNLGILDQRMALEWVHTNVANFGGDPSAIILWGQSAGSQ 89
                   9*******************9997478999****977777888722224567899***********99*****************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2307.92
//
Query:       KKY19781.1  [L=571]
Description: hypothetical protein UCRPC4_g04388 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-55  187.6   0.0    3.6e-55  187.1   0.0    1.2  1  XPG_I_2   XPG domain containing


Domain annotation for each model (and alignments):
>> XPG_I_2  XPG domain containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.1   0.0     2e-59   3.6e-55       1     244 [.     159     402 ..     159     407 .. 0.93

  Alignments for each domain:
  == domain 1  score: 187.1 bits;  conditional E-value: 2e-59
     XPG_I_2   1 eppfmvpavieaLknrw....kakditevvpgEADkfcAvlArklgcaVLTsDSDLlvhdlgeegsvifldsielssrvkkaepksklsiratkyrpae 95 
                 eppfmvpavie L+ r+     +k+i+++v gEAD +cA++A+++g+aVL++DSDLl +dlge++s+  l ++e       ++  + ++ir+ + rp++
  KKY19781.1 159 EPPFMVPAVIEELR-REdiipSFKEIVHLVRGEADIYCAAHAQRTGAAVLSNDSDLLGYDLGETSSILILGTLEAAL----SDDGESCEIRCLRWRPHK 252
                 69************.666999*****************************************************776....2333589*********** PP

     XPG_I_2  96 iakklgvpslqllAfelnrdphlklaelvkrakssskvaeksseyvaflkeyeessevksatsanalqlldprvseLllqleqa.aafnk..eeeapev 191
                 iakklg+++l +l fe   dp +++ ++ +ra++s+  a  + e+++f +ey+    +++ t  + +  ld+r+seL+ q+e   ++ ++  +++a+++
  KKY19781.1 253 IAKKLGLQNLTRLVFERFSDPSISFHSVKNRAQQSQISARRRVELEKFREEYA---IKDDLTGGKLMLSLDTRTSELYYQFEALrNGRQCseDTTAAHI 348
                 *****************************************************...6777888889999*************99977777447789*** PP

     XPG_I_2 192 YlpflvedhsrrcaWeegkdiRllAysllnls.skgerketvlEylrkgqriak 244
                 Ylp+ ve+h r+++W+ g ++R lAysllnls  ++ r+++v+E lr+g+ri++
  KKY19781.1 349 YLPVVVENHMRTSSWNIGLNTRILAYSLLNLSlPDHLRRTSVVEILRSGNRIIS 402
                 *********************************899***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 3625.19
//
Query:       KKY19782.1  [L=465]
Description: putative nuclear envelope protein brr6 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-21   74.5   0.1    9.6e-21   73.9   0.1    1.2  1  Brr6_like_C_C    Di-sulfide bridge nucleocytoplasmic transpor
    9.5e-16   58.1   0.0    2.4e-15   56.8   0.0    1.7  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    4.3e-07   30.3   0.0    9.3e-07   29.2   0.0    1.6  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.1e-06   28.5   0.0    2.2e-06   27.6   0.0    1.4  1  FR47             FR47-like protein
    2.1e-05   24.4   0.0    3.8e-05   23.6   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.039   14.6   0.0      0.075   13.7   0.0    1.4  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
        0.1   12.7   0.0       0.24   11.6   0.0    1.6  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
       0.48   10.8   3.0        1.3    9.5   2.2    1.9  2  PBP1_TM          Transmembrane domain of transglycosylase PBP


Domain annotation for each model (and alignments):
>> Brr6_like_C_C  Di-sulfide bridge nucleocytoplasmic transport domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.1   4.3e-24   9.6e-21       2      75 ..     227     300 ..     226     311 .. 0.98

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 4.3e-24
  Brr6_like_C_C   2 sylqllfnlllvllllylvisfvltikkDiekkleekkaellaeieeCkkeYeeNkCdpetrvpaleekCeewe 75 
                    +ylql+fn+ ++l +ly++ sf+l+i++D++k+ e++ +e+lae+++C+k++ +N+C  ++r+pale+ C++we
     KKY19782.1 227 KYLQLAFNAAILLGCLYAIGSFWLAIQSDVNKASEDAAQETLAEMAACAKNFVDNRCGADNRLPALESVCSNWE 300
                    7************************************************************************8 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0   1.1e-18   2.4e-15      39     113 ..     359     435 ..     327     441 .. 0.92

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 1.1e-18
                     EETTEEEEEEEEEEEET..TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHH CS
  Acetyltransf_1  39 eedgeliGfisllkipd..ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYe 113
                     e +g ++G++ ++ ++   ++ + +y+e+l+V+p++rgkG+G+aLl +l++++++  ++++ + v ++n+++i++Ye
      KKY19782.1 359 ESEGSVAGMALYFHNYStwTSAPGIYLEDLFVRPAFRGKGYGTALLSQLAKEVLKIKGRRLDWSVLKWNTPSIKFYE 435
                     56799**************99*******************************************************7 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   4.1e-10   9.3e-07      16      70 ..     366     435 ..     337     436 .. 0.68

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 4.1e-10
                     EEEEEEEES........TCTEEEEE-GGGTTSSHHHHHHHH..TT....SEEE.EEEEEE..THHHHHHHHH CS
  Acetyltransf_7  16 Gfialslld........aeitrlaVdpeyrgkGiGraLlea..ae....kgii.leqlel..naekaikfYe 70 
                     G++ + ++          +++ l+V+p++rgkG+G+aLl    +e    kg + l  + l  n+ ++ikfYe
      KKY19782.1 366 GMALYFHNYstwtsapgIYLEDLFVRPAFRGKGYGTALLSQlaKEvlkiKG-RrLDWSVLkwNT-PSIKFYE 435
                     5544444445665655556666*****************843422434455.222333333333.89****8 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   9.7e-10   2.2e-06      23      73 ..     384     435 ..     374     447 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 9.7e-10
                 SEEEEEE-GGG-SSSHHHHHHHHHHHHHHH.S-S-EEEEEETT-HHHHHHHH CS
        FR47  23 elgalqvlpehrrrGlgsrlvkalakeiae.rgktvllvvvasNtpsirlye 73 
                 +l  l v+p +r++G+g+ l ++lake+ + +g  +   v   Ntpsi++ye
  KKY19782.1 384 YLEDLFVRPAFRGKGYGTALLSQLAKEVLKiKGRRLDWSVLKWNTPSIKFYE 435
                 688899*********************************************8 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.7e-08   3.8e-05      40     102 ..     362     435 ..     358     439 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.7e-08
  Acetyltransf_10  40 gkivGviel.rdgs........hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYe 102
                      g+++G++ +  + s        +++ lfV+p++rg+G+g+aLl ++ +e+ k +++  + +v + +   ++fYe
       KKY19782.1 362 GSVAGMALYfHNYStwtsapgiYLEDLFVRPAFRGKGYGTALLSQLAKEVLKIKGRRlDWSVLKWNtPSIKFYE 435
                      566677765566666666777799*************************8888888778887777768889987 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.4e-05     0.075      49     133 ..     339     435 ..     292     436 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.4e-05
  Acetyltransf_3  49 seeegyg..waivl......kdtg...viGsv.glrdleeedee..aelg.ymlapsfwgkGyateavralleyafeelglerlvavidkeNeaS 128
                     ++++gy   +++++      +  +   v G++  +++++ ++ +  + l+ + ++p+f+gkGy+t  +++l + + +    +rl + + k N+ S
      KKY19782.1 339 NPNSGYAktLLVITppstqpE--SegsVAGMAlYFHNYSTWTSApgIYLEdLFVRPAFRGKGYGTALLSQLAKEVLKIK-GRRLDWSVLKWNTPS 430
                     444555544333333333221..1222466664455666666557755553667799******************6555.778************ PP

  Acetyltransf_3 129 irvle 133
                     i+ +e
      KKY19782.1 431 IKFYE 435
                     99765 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00011      0.24      25      53 ..     383     411 ..     360     417 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
  Acetyltransf_CG  25 ldfthTeVpeelrGkGiAkkLvkaaldda 53 
                      + ++  +V +++rGkG++ +L  +  +++
       KKY19782.1 383 IYLEDLFVRPAFRGKGYGTALLSQLAKEV 411
                      6678889**************99887765 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.4   3.2e+03      41      69 ..      99     127 ..      77     134 .. 0.50
   2 ?    9.5   2.2   0.00056       1.3      15      60 ..     149     194 ..     141     203 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.4
     PBP1_TM  41 deedDdddddeeeevprkgkkkkpprkkr 69 
                  e+ D++d  e+   +    ++++++ kr
  KKY19782.1  99 PEQADNEDTPESVRATPFQFSSNENKGKR 127
                 33444444444333333333333333333 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00056
     PBP1_TM  15 kakakparkkasrrrrrdddyddeyddeedDdddddeeeevprkgk 60 
                  +++ +  +++++rrrr + +d +   +    dd+ e+e +p   k
  KKY19782.1 149 TKRNDALERRVHKRRRRGEKFDRQLLISRRNSDDYTEDEASPTEEK 194
                 34445667888999*********88777777778888888876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.51
# Mc/sec: 2748.71
//
Query:       KKY19783.1  [L=971]
Description: putative phosphatidylethanolamine methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-55  184.0  18.1      1e-34  119.1   1.1    3.1  3  PEMT           Phospholipid methyltransferase
  ------ inclusion threshold ------
      0.027   15.0   0.0       0.42   11.2   0.0    2.3  1  SKICH          SKICH domain
      0.029   14.2   0.0      0.078   12.8   0.0    1.6  1  HECW_N         N-terminal domain of E3 ubiquitin-protein liga
       0.83    9.0   5.2          5    6.4   0.2    2.6  2  YitT_membrane  Uncharacterised 5xTM membrane BCR, YitT family


Domain annotation for each model (and alignments):
>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   1.9   4.1e-25   1.9e-21       2     103 ..     231     332 ..     230     334 .. 0.97
   2 ?   -3.6   1.3       3.3   1.5e+04      58      84 ..     392     419 ..     389     426 .. 0.55
   3 !  119.1   1.1   2.3e-38     1e-34       2     104 ..     497     599 ..     496     601 .. 0.98

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 4.1e-25
        PEMT   2 rlilGlllialglllvlssiealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstlgflGlaLitgsaaglllallvllvylialkfvEephlak 100
                 r ++G+ li+++l++ l +++ +++f ++ gdfF+  +++l+ +G++++  +P+y  +++g++G++++t s+++l+++l ++++ +++l fvE+ph++k
  KKY19783.1 231 RWTIGISLILFNLWVKLDAHRVVKDFAWYWGDFFYLIDQELIFDGVFEMAPHPMYSVGYVGYYGISMLTASYKVLFISLAAQAAQFAFLHFVENPHIEK 329
                 5678*********************************************************************************************** PP

        PEMT 101 iYg 103
                  Y 
  KKY19783.1 330 TYN 332
                 **6 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.3
        PEMT  58 gstlgflGlaLitgsaag.lllallvll 84 
                 + ++ +++l+Li+ s  +  ++ +++++
  KKY19783.1 392 LIMILIVALTLISPSTPAyQAIFVIAAT 419
                 5567788888888877652223333332 PP

  == domain 3  score: 119.1 bits;  conditional E-value: 2.3e-38
        PEMT   2 rlilGlllialglllvlssiealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstlgflGlaLitgsaaglllallvllvylialkfvEephlak 100
                 ++++G++li++++++++s++++lgefg+fygdfF+++++kl+++GiYr+lnnPe +++  g++G+aLit s a+llla++++++ l ++++vE+ph++k
  KKY19783.1 497 KHVIGIVLIVTQIWVSVSVYDSLGEFGWFYGDFFFDHSSKLTYKGIYRFLNNPEILLGNFGLYGAALITASKAVLLLAAFSQILSLSFIQLVERPHMQK 595
                 7899*********************************************************************************************** PP

        PEMT 101 iYgk 104
                 +Yg+
  KKY19783.1 596 LYGR 599
                 **97 PP

>> SKICH  SKICH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.5e-05      0.42      21      51 ..     737     767 ..     728     844 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.5e-05
       SKICH  21 tltkdfkpsskDwiGlfkvgfkslkdyvtyv 51 
                 ++t+ ++ s+kDwiGl+ v  +  ++     
  KKY19783.1 737 KWTAPLHHSKKDWIGLYMVADNPSREVTKIS 767
                 5566799**********99776666655554 PP

>> HECW_N  N-terminal domain of E3 ubiquitin-protein ligase HECW1 and 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.7e-05     0.078      28      69 ..     730     771 ..     721     788 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.7e-05
      HECW_N  28 ksqslvisWDikeevdaeDWiGlylidetnsenfldyknrgv 69 
                   + +++ W    + +++DWiGly++ ++ s+++ ++++ g 
  KKY19783.1 730 YGSPVTVKWTAPLHHSKKDWIGLYMVADNPSREVTKISSAGR 771
                 567899999999999*************99999988877664 PP

>> YitT_membrane  Uncharacterised 5xTM membrane BCR, YitT family COG1284
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.2    0.0011         5      67     121 ..     384     437 ..     371     439 .. 0.85
   2 ?    3.6   1.1    0.0082        37       2     103 ..     466     596 ..     465     601 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0011
  YitT_membrane  67 kfvlktlvailllsvfldllalppvkpltndpllaaifggvllGiGvGivfraga 121
                    +++ ++++ i++l v l l+  p++++++   ++aa ++ +   +G+G ++++++
     KKY19783.1 384 RVTDSSALLIMILIVALTLI-SPSTPAYQAIFVIAATVARIWFSVGIGYILNRQS 437
                    56667888899999999999.99****************************9886 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0082
  YitT_membrane   2 illivlgsllyAlginlfllpnkiatG.....GvtGialilnylt.........................glpigilvlilNipllilgykilgkk 67 
                    + +++++++l+A+++++  +p++  +G      v Gi li+ +++                         +l ++ ++  lN p ++lg + l   
     KKY19783.1 466 LSMMLCYACLVAAAWKTYSIPHDWNQGlvllkHVIGIVLIVTQIWvsvsvydslgefgwfygdfffdhssKLTYKGIYRFLNNPEILLGNFGLYGA 561
                    578999999999999999999999988444445689999999999999999999999999999999999999999999999999999999999999 PP

  YitT_membrane  68 fvlktlvailllsvfldllalppvkpltndpllaai 103
                     ++ +  a+lll++f ++l   ++ +l + p ++ +
     KKY19783.1 562 ALITASKAVLLLAAFSQIL-SLSFIQLVERPHMQKL 596
                    9999999999999999999.5666666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (971 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.51
# Mc/sec: 5693.25
//
Query:       KKY19784.1  [L=516]
Description: putative monooxygenase fad-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-28   98.5   0.0    6.1e-28   98.1   0.0    1.2  1  FAD_binding_3  FAD binding domain
     0.0099   15.1   0.1        1.7    7.8   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
       0.03   13.6   2.5        1.4    8.1   0.1    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
        0.1   13.2   1.7       0.27   11.8   0.2    2.3  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.0   1.4e-31   6.1e-28       3     318 ..       5     342 ..       3     376 .. 0.76

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 1.4e-31
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE....CCCCCEEEEEHHCHH CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealyne....lsdtpkaradleles 94 
                    +V+I G++++Gl+lal+  + G++  + ek + + +l+ + gl++ ++ +l+qlG++  i+++  p +  + ++y e    ++d + +  d+e e 
     KKY19784.1   5 KVIIAGGSLVGLSLALIFERLGIDYEVFEKGEIAPQLGASIGLHPHSLKILEQLGVWGDIEKHILPLQ--RRFHYDEnlkcFED-SWVLRDIE-EN 96 
                    79**************************************************************6665..66666663232222.23444444.67 PP

                    CST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEEEEE CS
  FAD_binding_3  95 spervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvldv 190
                     ++ +  +p  + ++iL++h  +   ++  +t v+s e+++egv+ +  d +   +   +++ l+GaDG +S+vrk++  e+  e++   ++ ++ 
     KKY19784.1  97 LHRPIIFMPRCDALKILYSH-IQNKQKIFDHTAVHSYEENNEGVKVTTSDGK--VH---QCDMLIGADGIHSQVRKRMSEEIAKEDQA-LSKAINE 185
                    7799999*************.556689****************999998885..55...8*******************996666644.4666666 PP

                    EEEC-SCCCTTCCEEEEECCTTEE................EEEECCE.TEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCE....... CS
  FAD_binding_3 191 lfdadlsdiveplvlilsaesrgv................mviPlen.tlerfyvqvearaekeersekfteeevkarlreivgektld....... 262
                     f+a+ +     l++i ++++++                  v++    +l  + ++v++ ++k+ + +++tee++ + +++ ++ k+ +       
     KKY19784.1 186 GFTAEYK----TLFAISQNDPQSPflpdaavqntyydgysGVVAAGVpGLAFWFLFVKIPKSKTPNCPRYTEEDANNLAKQYSHVKFGPgytlgdl 277
                    6666555....33444444444334566666666777779777777668888888889999999999*************9999987652222222 PP

                    .EEEEEEEEEEEEEEEESSSEETTEEE-GGGTEEE.-STT....SHHHHHH...HHHHHHHHHHH CS
  FAD_binding_3 263 .veieevsawtvaqrvaekyrkgrvflaGDAaHih.pPtg....GqGlNta...iqDavnLawkL 318
                      ++ + + +++++ v +k+++grv+l+GDA+H   +P +    G+G N+a   i + +nL   L
     KKY19784.1 278 wNKLVKSTLVPMEEGVLKKWSHGRVLLMGDAVHKLtTPQAtvnpGLGGNLAyegIAHFTNLLHSL 342
                    1356678899***********************85244433344899998622255666665555 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0028        12     144     177 ..       5      38 ..       2      68 .. 0.80
   2 !    7.8   0.0   0.00038       1.7     203     244 ..     126     167 ..     101     199 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0028
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveardrl 177
                  ++++ Gg+++G+ lA  + +lg +  + e +++ 
   KKY19784.1   5 KVIIAGGSLVGLSLALIFERLGIDYEVFEKGEIA 38 
                  68999*****************999888887665 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00038
                  SCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 203 gtsvkeidgngeklevvledgeeidadlvvvavGvrpstell 244
                  +t v+  ++n+e ++v+++dg++ ++d+++ a G+  + + +
   KKY19784.1 126 HTAVHSYEENNEGVKVTTSDGKVHQCDMLIGADGIHSQVRKR 167
                  6899999*************************9998776554 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.2     0.002       8.9       1      33 [.       7      38 ..       6      56 .. 0.86
   2 ?    8.1   0.1   0.00031       1.4     223     285 ..     118     178 ..     106     197 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.002
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgnig 33
                 iI G+   Gl+ a+ ++++g+ dy + Ekg+i 
   KKY19784.1  7 IIAGGSLVGLSLALIFERLGI-DYEVFEKGEIA 38
                 56677779*************.8*******985 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00031
  Pyr_redox_3 223 keekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkkslfeldedg 285
                  + +k k+ +++ v++ +e++e +kv+t+dgk v++ d  + a G +++++   ++ ++++++ 
   KKY19784.1 118 Q-NKQKIFDHTAVHSYEENNEGVKVTTSDGK-VHQCDMLIGADGIHSQVRKRMSEEIAKEDQA 178
                  2.55689999999999999999999999985.5666888888899888876555555554444 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   5.9e-05      0.27       1      31 [.       5      35 ..       5      47 .. 0.88
   2 ?   -0.9   0.1      0.57   2.6e+03      53      80 ..     119     145 ..     111     146 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.9e-05
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvvers 31
                kv++ Gg+++gl lA ++ +lg +  v+e +
  KKY19784.1  5 KVIIAGGSLVGLSLALIFERLGIDYEVFEKG 35
                799********************99999976 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.57
                 TTEEEECSEEEEEEEEETTSEEEEEEET CS
   Pyr_redox  53 ngievllntkveeiegsedgvesvklkd 80 
                 n+ ++  +t v + e++++gv+ v+++d
  KKY19784.1 119 NKQKIFDHTAVHSYEENNEGVK-VTTSD 145
                 5667888899999999999865.77655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1014  (0.0565564); expected 358.6 (0.02)
Passed bias filter:                      709  (0.0395449); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.34s 00:00:01.11 Elapsed: 00:00:00.55
# Mc/sec: 2818.65
//
Query:       KKY19785.1  [L=800]
Description: putative ubiquitin fusion degradation protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-27   95.6   0.0    6.8e-22   77.8   0.0    3.2  2  UFD1            Ubiquitin fusion degradation protein UFD1
  ------ inclusion threshold ------
      0.046   14.0   0.1       0.19   12.0   0.1    2.1  1  AZUL            Amino-terminal Zinc-binding domain of ubiquit
       0.12   11.9   5.7       0.63    9.7   1.3    3.5  3  MCR             Magnetochrome domain
       0.47   11.3   3.9        1.6    9.7   3.9    1.8  1  zf-PARP         Poly(ADP-ribose) polymerase and DNA-Ligase Zn
        4.2    7.4   9.0        7.3    6.6   0.0    3.5  3  zinc_ribbon_4   zinc-ribbon domain


Domain annotation for each model (and alignments):
>> UFD1  Ubiquitin fusion degradation protein UFD1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00038       1.4      16      37 ..      21      42 ..      11      52 .. 0.82
   2 !   77.8   0.0   1.9e-25   6.8e-22      37     171 ..      83     248 ..      74     249 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00038
        UFD1 16 reelekggkiiLPpsaLdeLtr 37
                +++  +g+ki LPpsaL+ L  
  KKY19785.1 21 KSTRLHGDKITLPPSALEALLA 42
                566679************9975 PP

  == domain 2  score: 77.8 bits;  conditional E-value: 1.9e-25
        UFD1  37 rlnieyPmlFelsnkkkkksthagVleFtaeegtvylPew.............................mmenlgleegdlveiesvslpkgkfvklqp 106
                 ++++  P++F++ n+++++ ++ag+ eF+aeegt+ l+++                               e l +++   ++++  +lpkg++v+l+p
  KKY19785.1  83 QQQLPQPLTFRIVNPRNERVVYAGIREFSAEEGTIGLSNFlqdalgledtvsetqwgeevsvgngniptTEEVLPIRKDTQITVHFKELPKGSYVRLRP 181
                 457889*********************************99*************************886666777899999****************** PP

        UFD1 107 qsedfldisdpkavLekaLr.nfatLtkgdvieikyn.dkvyelkvlevkpes.avsiietdlevdfa 171
                 ++   +d +d+k +Le+ Lr nf+t+t+g+++ ++   + ++++ + +  pe  +++i++tdlevd++
  KKY19785.1 182 LEAG-YDPEDWKSLLERYLRdNFTTMTNGEILDVRAGrSDNFRFLIDKFMPEGdGICIVDTDLEVDIE 248
                 *766.699**************************9952789**********988************97 PP

>> AZUL  Amino-terminal Zinc-binding domain of ubiquitin ligase E3A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   5.3e-05      0.19       5      30 ..     657     683 ..     653     702 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.3e-05
        AZUL   5 veqYfyQLthGCgsknCtnpt.Cassr 30 
                  ++ ++Q + GCg++ C+n++ C++ +
  KKY19785.1 657 ERRLLTQVMSGCGKSWCKNQYlCRTGK 683
                 57899**************97577765 PP

>> MCR  Magnetochrome domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.098   3.5e+02      13      29 ..     421     434 ..     412     435 .. 0.75
   2 ?    9.7   1.3   0.00018      0.63      15      28 ..     446     459 ..     444     461 .. 0.85
   3 ?    0.6   0.1      0.12   4.3e+02      20      29 ..     535     544 ..     533     545 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.098
                 -...-S-GGGT--BSST CS
         MCR  13 DGRqnmnCtkCHqIiga 29 
                 D      C++C q i++
  KKY19785.1 421 D---EVKCKNCQQFIPK 434
                 6...678****999986 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00018
                 ..-S-GGGT--BSS CS
         MCR  15 RqnmnCtkCHqIig 28 
                 R n  C+kCHq+ +
  KKY19785.1 446 RNNILCSKCHQVFQ 459
                 88999******976 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.12
                 GGGT--BSST CS
         MCR  20 CtkCHqIiga 29 
                 C  CH ++++
  KKY19785.1 535 CQFCHLLVPQ 544
                 999***9997 PP

>> zf-PARP  Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.9   0.00043       1.6       9      73 ..     424     508 ..     419     512 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00043
                 B-SSS--B--SSSEEEEE-...---............---EEE.EHHHHHTSSS--S-GGG..............EETTTTS-HH CS
     zf-PARP   9 kCkkCkkkIakgelRlgkkveiees............eskrWy.HvgCftekqiknkketkeieee.......eeiegfeeLeke 73 
                 kCk+C++ I+k ++ l +    +++             s++W  H+ C  + +  n+ ++k+++++        + ++ ++L  +
  KKY19785.1 424 KCKNCQQFIPKRTMPLHEAYCYRNNilcskchqvfqkRSPEWEaHWHCPHDSSYGNSSTSKQKHDQiyhpltpYDCPSCSDLASD 508
                 8*************666655554446666666666679999955****************9887776666666556666666555 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.002       7.3      25      34 ..     422     431 ..     414     433 .. 0.82
   2 ?    4.7   0.5    0.0079        28      26      35 ..     449     458 ..     446     459 .. 0.82
   3 ?   -2.1   0.7       1.1   3.8e+03       5       9 ..     499     503 ..     498     504 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.002
  zinc_ribbon_4  25 kvrCskCghv 34 
                    +v+C++C++ 
     KKY19785.1 422 EVKCKNCQQF 431
                    79******86 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0079
  zinc_ribbon_4  26 vrCskCghvF 35 
                    + CskC +vF
     KKY19785.1 449 ILCSKCHQVF 458
                    6799999999 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.1
  zinc_ribbon_4   5 CpsCk 9  
                    CpsC+
     KKY19785.1 499 CPSCS 503
                    99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (800 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.58
# Mc/sec: 4159.50
//
Query:       KKY19786.1  [L=617]
Description: putative het domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-32  111.2   0.3    9.5e-32  110.4   0.3    1.5  1  HET       Heterokaryon incompatibility protein (HET)


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.3   5.3e-36   9.5e-32       1     146 []      51     222 ..      51     222 .. 0.75

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 5.3e-36
         HET   1 YeaLSYvWgdsk.............ekeeievng.......klleltenledalqvlrk.lgerylWiDaiCInQdddkekskqvqlmadIYsnAelvi 78 
                 Y+aLSYvWgd++             +      ++         +++t+nle+al++lr+ +++++lW+DaiCInQ+d +e++ qv++m++IYs A+ v 
  KKY19786.1  51 YAALSYVWGDATivkpislgyqdirS------REglhseafIDFQVTTNLEAALRQLRSpDHVKVLWVDAICINQQDLQERAMQVRKMGRIYSMASEVT 143
                 9***********77777764444431......22666666789****************9*************************************** PP

         HET  79 valgsese.dsgllalealralkkekleekeielkksaek.............kkellekeeraieellespwfkRvWvlQE 146
                 ++lg+  e d+ +++l++ + ++  +    +  + ++  +             +++    + +a++++++++wf RvWvlQE
  KKY19786.1 144 IWLGKLLEaDEADFGLQEQDMQRGWQYLC-RFAEVTR--SgvseedfyygidhSQRPTGPRYNALQAICSRKWFGRVWVLQE 222
                 ****9886466455444443322222222.1111111..0123356788887677777888999*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 4284.17
//
Query:       KKY19787.1  [L=906]
Description: putative peroxisomal hydratase-dehydrogenase-epimerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-84  282.0   7.4    5.8e-47  159.7   0.6    2.5  2  adh_short        short chain dehydrogenase
    3.8e-65  219.7   9.1    6.4e-37  127.3   0.9    2.8  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.7e-29  101.9   0.1    7.8e-29   99.7   0.0    2.0  2  MaoC_dehydratas  MaoC like domain
    2.4e-27   96.0   4.4    3.8e-13   49.7   0.3    2.3  2  KR               KR domain
    5.8e-05   22.5   3.5    0.00069   19.0   0.3    2.7  3  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas
  ------ inclusion threshold ------
          1    9.2  10.0        1.9    8.3   1.0    3.2  4  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
        2.5    7.9   8.0        5.5    6.8   1.0    2.4  2  PglL_A           Protein glycosylation ligase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   1.2   7.3e-40   1.9e-36       1     181 [.       9     195 ..       9     206 .. 0.85
   2 !  159.7   0.6   2.3e-50   5.8e-47       1     189 [.     314     496 ..     314     502 .. 0.93

  Alignments for each domain:
  == domain 1  score: 125.4 bits;  conditional E-value: 7.3e-40
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEES.........CHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS-- CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdr.........seekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgs 90 
                 ++v+vtGa++G+G+a+a  +a++Ga+vvv d          s++++  v++e+k++g ka+   ++  + e+ ++++++a++ +g++d+L nNAGi ++
  KKY19787.1   9 QTVVVTGAGGGLGKAYALFFASRGANVVVNDLggstkgegaSNKAADVVVDEIKKAGGKAV---ANYDSVENGDKIIDTAIQAFGRIDILLNNAGILRD 104
                 589**************************87511111111133444445566666555554...455566788899*********************** PP

                 SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESS CS
   adh_short  91 gpfselseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGl 181
                 ++f+++++++w+ +  v ++g+++++ra+ p++ kq+ Gr++n++S ag+ +++g+a YsA+K a +g+ ++lake  +++i +n++aP +
  KKY19787.1 105 VSFKNMKDSDWDLINTVHIKGAYKCARAAWPHFRKQKYGRVINTASAAGLFGNFGQANYSAAKLAQVGFGETLAKEGYKYNILCNIIAPIA 195
                 ****************************************************************************************954 PP

  == domain 2  score: 159.7 bits;  conditional E-value: 2.3e-50
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 kv+l+tGa++G+Gra+a  +ak Ga+vvv d  + +   +++e++++g ka + ++  +   + ea+v++a++ +g++d+LvnNAGi ++++f++++++
  KKY19787.1 314 KVALITGAGGGLGRAYALLFAKLGASVVVNDLVNPDT--TVQEIQKLGGKAAPSKASAE---DGEAVVKAAIDAFGRVDILVNNAGILRDKSFHNMDDK 407
                 89***************************88886655..9*******999999998666...6778899999*************************** PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                  w++vi+v l g++++tra+ p++lkq+ Gr+vn++S+ g ++++g+a Y+A+Ka++ g++r+la+e a+ +i vn++aP +  T+m+++
  KKY19787.1 408 LWDDVINVHLRGTYKTTRAAWPYFLKQKYGRVVNTTSTSGIYGNFGQANYAAAKAGILGFSRALAREGAKNNIYVNTIAPNA-GTNMTRT 496
                 ********************************************************************************64.5666655 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   1.8   1.1e-30   2.8e-27       1     182 [.      15     203 ..      15     243 .. 0.84
   2 !  127.3   0.9   2.5e-40   6.4e-37       1     183 [.     320     498 ..     320     538 .. 0.85

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 1.1e-30
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH..H....HHHHHHHHHTTSEE...EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GG CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea..k....krveelaeelgaev...lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfl 88 
                   Ga  g+G+a A  +a++Ga+vv+ dl+ +   +    k+++ +++e+++ +     ++  + e+ +++++++ + fg++Dil+nnagi ++   +f 
    KKY19787.1  15 GAGGGLGKAYALFFASRGANVVVNDLGGSTkgEgasnKAADVVVDEIKK-AggkAVANYDSVENGDKIIDTAIQAFGRIDILLNNAGILRD--VSFK 108
                   7889**********************98764331111333334444444.246789999999999**************************..**** PP

                   GH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGS CS
  adh_short_C2  89 etsreefdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgi 182
                   +++++++d +  v +++++++a+aa p+++++  g+++n++s ++  +  +++ y+aaK a +++  +lA+e  +++i +N ++p +   ++++ i
    KKY19787.1 109 NMKDSDWDLINTVHIKGAYKCARAAWPHFRKQkyGRVINTASAAGLFGNFGQANYSAAKLAQVGFGETLAKEGYKYNILCNIIAPIAAS-RMTETI 203
                   ***************************9998889**************************************************97765.444444 PP

  == domain 2  score: 127.3 bits;  conditional E-value: 2.5e-40
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdr 97 
                   Ga  g+Gra A ++a+ Ga+vv+ dl + +  +v+e+++ lg ++ +  + + e+ ea+v+++ + fg++Dilvnnagi ++  ++f++++++ +d+
    KKY19787.1 320 GAGGGLGRAYALLFAKLGASVVVNDLVNPD-TTVQEIQK-LGGKAAPSKA-SAEDGEAVVKAAIDAFGRVDILVNNAGILRD--KSFHNMDDKLWDD 411
                   7889************************98.89999998.5666655554.5678899************************..************* PP

                   HHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGST CS
  adh_short_C2  98 aldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgik 183
                   +++v l++++++++aa p  +k++ g++vn++s+++  +  +++ y+aaKa++ +++r+lA+e ++++i vN+++p +  T++++ i 
    KKY19787.1 412 VINVHLRGTYKTTRAAWPyFLKQKyGRVVNTTSTSGIYGNFGQANYAAAKAGILGFSRALAREGAKNNIYVNTIAPNA-GTNMTRTIM 498
                   ******************6444448***************************************************86.456766664 PP

>> MaoC_dehydratas  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.64   1.6e+03      79     108 ..     707     736 ..     699     749 .. 0.78
   2 !   99.7   0.0   3.1e-32   7.8e-29       5     114 ..     776     883 ..     772     891 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.64
                      EEEEEEE-S--BTTCEEEEEEEEEEEEEEE CS
  MaoC_dehydratas  79 geikvrFtkpVlpgdtlkvelevvgkrdvr 108
                       +++v+++k+V + d+  + ++v+g + ++
       KKY19787.1 707 AAQTVSYPKLVEVVDKKNAAVVVTGTTTKD 736
                      578899999999999999999999977666 PP

  == domain 2  score: 99.7 bits;  conditional E-value: 3.1e-32
                      CTTSEEEEEEEEEEEHHHHHHHHHHHT---GGGT-HHHHHHTTTSSSB--HHHHHHHHHHHHHHHHSTTEGGGEEEEEEEE-S--BTTCEEEEE CS
  MaoC_dehydratas   5 aigekvetekeitvteadialyalvsgDlnpiHvdpefAkkagfggpIahGmltlaivaklveeelgdnvvarvgeikvrFtkpVlpgdtlkve 98 
                      ++++ +++  e t++e+++aly+l  gD np+H+dp f+k++gf++pI+hG++ ++++ k++ + +g      ++ ikvrF+++Vlpg+tl++e
       KKY19787.1 776 PPQRAPDAVVEETTSEDQAALYRL-NGDRNPLHIDPSFSKVGGFKTPILHGLCFMGFSGKHILKTYGA-----FKNIKVRFAGVVLPGQTLRTE 863
                      78999*******************.*******************************************.....********************* PP

                      EEEEE....EEEEEEEEEEE CS
  MaoC_dehydratas  99 levvg....krdvrktkkve 114
                      ++++     +  v++t+++ 
       KKY19787.1 864 MWKETiggrNVVVFQTIVKD 883
                      ***98443344444555444 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.5   6.5e-16   1.7e-12       2     161 ..      10     175 ..       9     186 .. 0.82
   2 !   49.7   0.3   1.5e-16   3.8e-13       3     168 ..     316     476 ..     314     486 .. 0.84

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 6.5e-16
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEE.E-SS......--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE-------- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvl.lsRsa....aadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdk 95 
                 t+++tG+ GgLG++ a + a++ga+ +v  l+ s     a++++++  ++e+++ g +  +    v + d   ++++++ + +++i   ++ Ag+lrd 
  KKY19787.1  10 TVVVTGAGGGLGKAYALFFASRGANVVVNdLGGSTkgegASNKAADVVVDEIKKAGGKAVANYDSVENGD---KIIDTAIQAFGRIDILLNNAGILRDV 105
                 689*********************9998434444335556666666799******988776665666655...56777777889*************** PP

                 -TTT--HHHHHHHHTTTTHHHHHHHHH....TTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHH CS
          KR  96 lleemtaedleqvlapKvkGawnLhel....ledesldffvlfSSiagllgsagqanYaaaNaflDalae 161
                  +++m+++d++ +    +kGa    ++    +++++   ++ ++S+agl+g++gqanY+aa   + ++ e
  KKY19787.1 106 SFKNMKDSDWDLINTVHIKGAYKCARAawphFRKQKYGRVINTASAAGLFGNFGQANYSAAKLAQVGFGE 175
                 ********************9998887333356699*************************876666555 PP

  == domain 2  score: 49.7 bits;  conditional E-value: 1.5e-16
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                  litG+ GgLG++ a   a+ ga+ +v       +++d  ++++e+++lg +    +a   d    ea+++++ + ++++   ++ Ag+lrdk + +m+
  KKY19787.1 316 ALITGAGGGLGRAYALLFAKLGASVVVNDL----VNPD--TTVQEIQKLGGKAAPSKASAEDG---EAVVKAAIDAFGRVDILVNNAGILRDKSFHNMD 405
                 59*********************9877432....3344..46999999999999999765555...555666666789********************* PP

                 HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHH CS
          KR 102 aedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqgl 168
                 ++ ++ v++  ++G+    ++  +    ++   +v ++S +g++g++gqanYaaa a + ++ +  +++g+
  KKY19787.1 406 DKLWDDVINVHLRGTYKTTRAAWPyflkQKYGRVVNTTSTSGIYGNFGQANYAAAKAGILGFSRALAREGA 476
                 **************99888765444444999************************9988888877777765 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.3   2.7e-07   0.00069      33     128 ..       5     112 ..       1     117 [. 0.84
   2 ?    3.5   0.0     0.015        39      31      67 ..     308     344 ..     305     356 .. 0.88
   3 ?   -3.7   0.1       2.6   6.7e+03      55      73 ..     719     737 ..     708     739 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.7e-07
                    --TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-T..TSCCHHHHHCCSSEEEE-S...S-TT-B-GGGS-TT-EEEE---EEC.......-TTE CS
  THF_DHG_CYH_C  33 elegkkvvvvGrsnivgkplallLleknatVtvchs..ktkdlaeitreadivvvav...GkpelikaemvkegavviDvGinrv.......ekgk 116
                      ++++vvv G++  +gk+ al++++++a V v +   +tk   +  + ad+vv  +   G + + + + v++g  +iD  i+         ++  
     KKY19787.1   5 RFDNQTVVVTGAGGGLGKAYALFFASRGANVVVNDLggSTKGEGASNKAADVVVDEIkkaGGKAVANYDSVENGDKIIDTAIQAFgridillNNAG 100
                    567899********************98888877652268888889999****865422277789999***************9989999988888 PP

                    EE-SB-HHHHCT CS
  THF_DHG_CYH_C 117 lvGDvdfeevke 128
                    ++ Dv+f+++k+
     KKY19787.1 101 ILRDVSFKNMKD 112
                    999999998875 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.015
                    T---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE- CS
  THF_DHG_CYH_C  31 gielegkkvvvvGrsnivgkplallLleknatVtvch 67 
                    + + +gk +++ G++  +g++ all+++ +a V v +
     KKY19787.1 308 KLDFSGKVALITGAGGGLGRAYALLFAKLGASVVVND 344
                    67899**************************998865 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 2.6
                    HHHCTT-EEEEE-TTSCCH CS
  THF_DHG_CYH_C  55 lLleknatVtvchsktkdl 73 
                    ++ +kna V v+ + tkd 
     KKY19787.1 719 VVDKKNAAVVVTGTTTKDA 737
                    4556788888888888765 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   1.0   0.00075       1.9       1      49 [.      10      64 ..      10      94 .. 0.71
   2 ?    5.7   0.3    0.0049        12       4      44 ..     318     360 ..     314     394 .. 0.73
   3 ?   -2.0   0.0       1.1   2.7e+03       5      43 ..     534     572 ..     534     615 .. 0.73
   4 ?   -3.4   0.1         3   7.6e+03     144     157 ..     714     727 ..     711     736 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00075
                EEEEE--.SCCHHHHHHHHHHTT-EEEEE-S.....-HHHHHHHHHHHHHHHHCC CS
     3HCDH_N  1 kvaviGa.GtmGagiaavfasagleVvlvdi.....seealekalekiekslekl 49
                +v v Ga G +G+  a  fas+g +Vv+ d       e a +ka++ + ++++k+
  KKY19787.1 10 TVVVTGAgGGLGKAYALFFASRGANVVVNDLggstkGEGASNKAADVVVDEIKKA 64
                5889999678********************9766553344444444444444443 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0049
                 EE--.SCCHHHHHHHHHHTT-EEEEE-S.-HHHHHHHHHHHHH CS
     3HCDH_N   4 viGa.GtmGagiaavfasagleVvlvdi.seealekalekiek 44 
                 + Ga G +G+  a +fa+ g +Vv+ d  ++++  +  +k+  
  KKY19787.1 318 ITGAgGGLGRAYALLFAKLGASVVVNDLvNPDTTVQEIQKLGG 360
                 4577578********************7566666666666554 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.1
                 E--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHH CS
     3HCDH_N   5 iGaGtmGagiaavfasagleVvlvdiseealekalekie 43 
                 +G+G  Ga   + +  +g++V +  + ee l++ ++ i+
  KKY19787.1 534 VGSGWFGATRWQRTGGHGFPVDVKLTPEEVLKHWKDIIT 572
                 799999999999999999999998888888887776665 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 3
                 --EEEEEE-TT--H CS
     3HCDH_N 144 mkLvEvvrgekTse 157
                  kLvEvv +++ + 
  KKY19787.1 714 PKLVEVVDKKNAAV 727
                 58999999887665 PP

>> PglL_A  Protein glycosylation ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   1.0    0.0095        24       2       9 ..     155     162 ..     154     163 .. 0.93
   2 ?    6.8   1.0    0.0021       5.5       1       9 [.     448     456 ..     448     459 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0095
      PglL_A   2 yGNlrQpN 9  
                 +GN++Q+N
  KKY19787.1 155 FGNFGQAN 162
                 9******9 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0021
      PglL_A   1 pyGNlrQpN 9  
                 +yGN++Q+N
  KKY19787.1 448 IYGNFGQAN 456
                 6******** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (906 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 5666.28
//
Query:       KKY19788.1  [L=294]
Description: putative uridine cytidine [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.35s 00:00:00.98 Elapsed: 00:00:00.57
# Mc/sec: 1547.64
//
Query:       KKY19789.1  [L=493]
Description: putative aromatic-l-amino-acid decarboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.9e-107  357.6   0.0   7.9e-107  357.2   0.0    1.2  1  Pyridoxal_deC    Pyridoxal-dependent decarboxylase conserved 
    2.5e-05   23.7   0.0    3.8e-05   23.1   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.2   0.0  8.8e-111  7.9e-107       1     374 [.      28     418 ..      28     419 .. 0.93

  Alignments for each domain:
  == domain 1  score: 357.2 bits;  conditional E-value: 8.8e-111
                    TTTTGGGSCSSHHSSHH.HHHHHHHHHHCTGGGS--TTSTTBHCSSH....HHHHHHHHHHHHHT-BTSSTTTSHHHHHHHHHHHHHHHHHTT--G CS
  Pyridoxal_deC   1 PeylkrlldeaapekaesleqilediekilapgvttwhspefhkllpagnslisllgdlLadainkngftweesPaltelevvvldwlaellglpe 96 
                    P+yl ++l+++ap + es+++i  d++  ++pg+t+w+sp+f++++p    ++s+lg++ ++a     f+w  sPa+tele++v+dwla+ ++lp 
     KKY19789.1  28 PGYLAPQLPTEAPLDGESWDDIQADVASKIVPGLTHWNSPNFFAFFPGSVTYPSILGEMYSAAFTAPAFNWLCSPACTELETIVMDWLAKAFALPP 123
                    99********************************************************************************************** PP

                    GGTCC.T..-EEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTS.H.........HHHHCCEEEEEETTS-HHHHHHHHHHT-EEEEE--..BTTT CS
  Pyridoxal_deC  97 eflek.e..gggvlqvgssestllallAartkvikemkekgkelke.........aeildklvlytsdqahssvekaalvlgvklrvipl..deng 178
                     fl++ e  gggv+  ++se++  +++Aar++ +k m++ ++ l++         a + ++lv+  s ++hss +k a ++g + +++p+  de+ 
     KKY19789.1 124 TFLSTsEngGGGVIHGSASEAIVTVMVAARERYLK-MRADEEGLVDgtmqrddriAFLRGRLVALGSTESHSSTKKGAIIAGTRFKTVPVdlDEDL 218
                    ****96599**********************9876.555444443311111112245789************************999986226899 PP

                    BB-HHHHHHHHHHHHCTT.EEEEEEEEBS-TTT-BB--HHHHHHHHHH.CT-EEEEE-TTGGGGGGSGGGGGGGTTGGGESEEEEECCCCTS--SS CS
  Pyridoxal_deC 179 klrgaalekaieedkekGlipffvvatlGttvlgaFddlkelgdicek.ydlwlHvDAAyaGsaficpeirhllkgieradSitvnphKlllvlld 273
                    +l g+ l++ +ee+k++Gl p++++ tlGtt+++a d  +e+++i +   +lw+HvDAAyaG+a++c e++h  k +++adS+++n hK+llv++d
     KKY19789.1 219 SLTGSRLQAVLEECKAEGLEPYYITTTLGTTTSCAVDRFDEIAEIKKAwKGLWVHVDAAYAGAALVCEEYQHYSKAMQMADSFNMNMHKWLLVNFD 314
                    9********************************************999568********************************************* PP

                    -EEEEESSCCGCHHHH-EEECCCT.TT..TTTSEECCCGSSSSSGHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT.EEECSTTB CS
  Pyridoxal_deC 274 csalivkdkealqqalqleaeYLehed..sdvaadlgtkaiplsrrvrilklwfvlralGveglqnqirksvelakyleklirkder.feivaeve 366
                    +s+l+++++ +l++al++ + YL+++   s++ +d+++++ipl+rr+r+lk+wfvlr++G++glq++ir+svel+  +++l+  +++ feiv  + 
     KKY19789.1 315 ASCLFIQKRADLTHALSIMPAYLQNNFtdSGLVTDYRDWQIPLGRRFRALKVWFVLRTYGIKGLQQHIRRSVELGDLFTELLTSKGQlFEIVGTPR 410
                    ************************65588******************************************************************* PP

                    SSEEEEEE CS
  Pyridoxal_deC 367 lglVcFrl 374
                    ++l cFr+
     KKY19789.1 411 FALTCFRI 418
                    ******98 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   4.3e-09   3.8e-05      81     252 ..     191     381 ..     101     410 .. 0.67

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 4.3e-09
                      HHHHSST.THHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHH.CT-EEEEEETTHH CS
  Beta_elim_lyase  81 hihfdet.gaiaelagvklrdlknkeaGkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakk.ygiplhlDgARfa 172
                        h  +  gai +    k ++++ +e+  ++  +l+a+++e +a  e  +  ++t+T  t   +   ++  +e+a+i k+ +g+ +h+D+A   
       KKY19789.1 191 ESHSSTKkGAIIAGTRFKTVPVDLDEDLSLTGSRLQAVLEECKA--EGLEPYYITTTLGT--TTSCAVDRFDEIAEIKKAwKGLWVHVDAAYAG 280
                      455666624444447777777778887888899********999..66666666666666..567778888888888876589********555 PP

                      HHH.HHHTS-CHHHHTTSSEEEEESSSTT--SS-EEEEE-HH.......................HHHHHHHHHHHHT---SSTHHHHH...HH CS
  Beta_elim_lyase 173 naa.kslgeivkemfsyvDsvtmslkKdllanvGgvlafrddel...................edylaerveqrkylggglrqagvlaa.leag 245
                       a   +  ++ ++ ++++Ds+ m + K ll+n ++ ++f ++ +                      +   + ++  lg ++r   v  + + +g
       KKY19789.1 281 AALvCEEYQHYSKAMQMADSFNMNMHKWLLVNFDASCLFIQKRAdlthalsimpaylqnnftdSGLVTDYRDWQIPLGRRFRALKVWFVlRTYG 374
                      554444456778889*******************666666663445555555555554444442222222333333333333333333344455 PP

                      HHHHHHS CS
  Beta_elim_lyase 246 iraleeg 252
                      i  l+++
       KKY19789.1 375 IKGLQQH 381
                      5555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 3119.75
//
Query:       KKY19790.1  [L=353]
Description: putative transcriptional activator hac1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-05   25.0  15.0    4.3e-05   23.5  14.9    1.8  2  bZIP_2          Basic region leucine zipper
      5e-05   23.3  11.8    9.7e-05   22.4  11.8    1.4  1  bZIP_1          bZIP transcription factor
    0.00012   22.5   3.9    0.00026   21.5   3.9    1.5  1  bZIP_Maf        bZIP Maf transcription factor
  ------ inclusion threshold ------
        1.4    9.6  10.1        3.4    8.3  10.1    1.6  1  NAM-associated  No apical meristem-associated C-terminal doma


Domain annotation for each model (and alignments):
>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5  14.9   9.6e-09   4.3e-05       2      52 ..      77     128 ..      74     129 .. 0.93
   2 ?   -2.7   0.0       1.4   6.5e+03      30      42 ..     282     294 ..     277     295 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 9.6e-09
                 XXXXXXXXX.XXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2   2 ddeyrerRr.kNreAarrsRekkkakeeeleervkeLeeeNaqLrqkveqLe 52 
                 ++++r +R  +Nr Aa++sR++kk++ e le+++k L+e+ aq ++ +++++
  KKY19790.1  77 KEQRRCERIvRNRKAAATSRDRKKMEFERLEQENKILREQLAQQQAIIQAMQ 128
                 5788889************************************999999987 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHH CS
      bZIP_2  30 leervkeLeeeNa 42 
                  e+ v++L ++Na
  KKY19790.1 282 SERHVQYLLKDNA 294
                 688999**99997 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4  11.8   2.2e-08   9.7e-05       1      42 [.      76     117 ..      76     129 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.2e-08
                 XXXXXXXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   1 ekelKrekrkqkNReaArrsRqRKqaeieeLerrvkaLekeN 42 
                 eke +r  r  +NR aA+ sR RK++e e+Le++ k L ++ 
  KKY19790.1  76 EKEQRRCERIVRNRKAAATSRDRKKMEFERLEQENKILREQL 117
                 79999********************************99875 PP

>> bZIP_Maf  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   3.9   5.7e-08   0.00026      23      79 ..      73     129 ..      57     135 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 5.7e-08
    bZIP_Maf  23 eeeverLKqrRRrlKNrgyakscrkrrlqqkeelekekeeleeelerlqqelsrlrq 79 
                  ee ++ ++  R+ +Nr++a+++r+r+  + e le+e++ l+e+l + q+ ++++++
  KKY19790.1  73 TEEEKEQRRCERIVRNRKAAATSRDRKKMEFERLEQENKILREQLAQQQAIIQAMQN 129
                 455556677779**********************************99998888875 PP

>> NAM-associated  No apical meristem-associated C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  10.1   0.00077       3.4      50     138 ..      28     122 ..       3     128 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00077
  NAM-associated  50 e.dssesssesseesaadsestsssrlkRPiGkkka.....Kekrkeaskdeealeklasaqkkiakkskekkeeaeleekkldieeekveaeqr 138
                     +  + e+s+ + +e + +s s++++++  Pi   +a     K++++e++k++   e +++++k+ a  + +kk e e  e++++i +e+++ +q 
      KKY19790.1  28 AtPTPEPSERAGSEASESSGSKKRKSWGQPIPEYQAilppgKRAKTEEEKEQRRCERIVRNRKAAATSRDRKKMEFERLEQENKILREQLAQQQA 122
                     222334444445555566777888888888888887666667999999********************999998866666699999999976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1284  (0.0716158); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 2111.43
//
Query:       KKY19791.1  [L=643]
Description: putative chromatin remodeling complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-22   79.4   0.0      3e-17   62.4   0.0    2.7  3  Actin     Actin


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   1.7e-21     3e-17      60     199 ..     124     263 ..      84     286 .. 0.85
   2 !   13.7   0.0   9.6e-07     0.017     305     350 ..     446     491 ..     417     506 .. 0.86
   3 ?   -1.6   0.0     0.043   7.7e+02     386     404 ..     622     640 ..     600     642 .. 0.80

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 1.7e-21
       Actin  60 evrspvedGvvedwdaveelwehvlkeelkvdpeehpllltepplnppkqrekalEivfEkfkvpalylaksavlsafasgkstglvvDsGasvtsvvp 158
                 +  +p+++G +e+w  + +l  h++       p ++p+l++ +p  ++ + e +++ +fE+fk+pa++l ++a  + +a+g  ++ vvD+G+s+  v++
  KKY19791.1 124 SAVYPIREGRIENWSCFLALVTHIYNT--LSPPFHTPILVVSQPCWSARDHEIITQFFFENFKIPAFCLIDAALATCYAYGVPSATVVDVGHSKCDVTA 220
                 4568*******************9877..4567888888888888889999************************************************ PP

       Actin 159 VldGyv..LkkairrsdlgGkaLteqlkellssknvevtpryl 199
                 V + ++    ++++    gG+aLt  l ell++k ++     +
  KKY19791.1 221 VSEFVPqeAGRGVAVKRCGGDALTLRLLELLERKGFNYEMCEQ 263
                 **9766225689*********************9777654444 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 9.6e-07
       Actin 305 iselivaainacdvdlrpeLlanivvtGGnsllpglteRlekelaq 350
                 i+  i+++i+a+d   r++L +n +++G+ s l+g+++ l + l++
  KKY19791.1 446 IAATIHNTIQAVDGSKRSDLWENLIIVGNGSRLRGFKDSLLQILTT 491
                 6788999******************************988776665 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.043
       Actin 386 qlwvskqEYeEqGssvver 404
                 +  ++++EY+++G+  ++ 
  KKY19791.1 622 KGFFTRSEYNDMGPAGIHE 640
                 56789********998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 4122.66
//
Query:       KKY19792.1  [L=208]
Description: putative vacuolar protein sorting protein 46 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-11   43.7   3.7    2.9e-11   43.3   3.7    1.2  1  Snf7      Snf7
     0.0038   16.7   0.3     0.0045   16.5   0.3    1.1  1  FAM117    Protein Family FAM117


Domain annotation for each model (and alignments):
>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   3.7   3.2e-15   2.9e-11       5     157 ..      10     169 ..       6     188 .. 0.82

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 3.2e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
        Snf7   5 sLrkaerkldkkqeslekkikkleaelkklakkgn..kdralllLKqkkryekqldqldnqlanleqvslaienlksnkevlnamkqgakamkamnkkv 101
                 +L+ + ++l+++  + ++  k ++++lkk  +++    + a+l++   +r+ + + ql +  +++++v+  ++++ ++ +v ++m q+ k m  + k +
  KKY19792.1  10 NLKFTSKQLNRQAARADRDSKAEQSKLKKALQQTPpqPQIARLYATSSVRHSNHRIQLLTLASRIDAVAARVQTAITMRAVTQSMAQTVKGMDVALKSM 108
                 5788999**************************654499************************************************************ PP

                 CCHHHHHHHHHHHHHHHHHTCHH...HHHHHHHTT-..GGTTHHHHHHHHHHHHHHHHHCS CS
        Snf7 102 didkidklmdeiedqmekaeeis...Ealsrsldda..deedEeeleaeLdaLeqelgdee 157
                 d++ki  +m+ +e q e  + +    E ++  +++    +e  ++++a + ++++e g e 
  KKY19792.1 109 DLEKIGAVMEKFESQFEDLDVVGgyyENVAGGVESQqvGAEGQADVDALMARVADEAGVEM 169
                 ***************9998887511144444454445566666666666666666666655 PP

>> FAM117  Protein Family FAM117
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.3     5e-07    0.0045      53     159 ..      16     131 ..      10     155 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5e-07
      FAM117  53 sshkRsaswgsadhlreiakLrqqLQrskkasrsskekerqsplpgdhaiagatqsskskpvtiPl...iplsklsprlrrsvegLnqEleev...... 142
                 ++ +R a+    d + e +kL++ LQ++  +++ ++ + ++s  +++h i+  t +s+  +v+  +   i++  +++ + + v g++  l+ +      
  KKY19792.1  16 KQLNRQAARADRDSKAEQSKLKKALQQTPPQPQIARLYATSSVRHSNHRIQLLTLASRIDAVAARVqtaITMRAVTQSMAQTVKGMDVALKSMdlekig 114
                 566899999***************************************777776655555555444323555555689999999998766554111113 PP

      FAM117 143 fvkekaekehellevpd 159
                  v ek e+++e l+v+ 
  KKY19792.1 115 AVMEKFESQFEDLDVVG 131
                 34555555556666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1350  (0.075297); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.31s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1312.43
//
Query:       KKY19793.1  [L=539]
Description: putative rrna processing protein bystin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.7e-127  423.3   0.0     6e-127  422.9   0.0    1.1  1  Bystin    Bystin


Domain annotation for each model (and alignments):
>> Bystin  Bystin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  422.9   0.0  3.3e-131    6e-127       4     290 ..     163     490 ..     160     492 .. 0.94

  Alignments for each domain:
  == domain 1  score: 422.9 bits;  conditional E-value: 3.3e-131
      Bystin   4 rktLadlilekieekeaekesklekee.......eeeeeeeldpkvvevYekvgelLsrYksGklpkafkilpslknWeellaltePekWtpnavyeat 95 
                  ++Ladlil++i+ekea +++++  +        ++ +++e+++kvv+v++k+g +LsrYksG+lpk+fk+lp+l++W +lla+t+Pe+Wtpna+y+at
  KKY19793.1 163 GTNLADLILQRIAEKEAAQSAQAAGQPvpifgggDPADAVEIPAKVVDVFQKCGLILSRYKSGPLPKPFKVLPTLPQWPDLLAITRPEQWTPNACYAAT 261
                 689****************9888777789*****999************************************************************** PP

      Bystin  96 rifvsnlkekkaqrflelvllprvrddieenkkLnvhlyeaLkkalykpaaffkgillPLvesgtctlreaaivgsvlakvsipvlhsaaallklael. 193
                 +ifvs+ ++  +q++l+ vll+r+r+di+e+ kLnvhl++aLkk+lykpaaffkg+l+PLv+sgt tlrea iv+ vl++vsipvlhsaaal++l+e+ 
  KKY19793.1 262 KIFVSS-QPIVVQHYLTDVLLDRIREDIHETGKLNVHLFNALKKSLYKPAAFFKGFLFPLVDSGTATLREASIVSGVLSRVSIPVLHSAAALVRLCEIa 359
                 ******.******************************************************************************************** PP

      Bystin 194 ........eysgatslfirvlldKkyaLpykvvdalvfhFlrfree..........................krelpvlwhqsllvfaqrYknditedq 258
                         e +gat++fir+ll KkyaLpyk+vdalvfhFlrfr++                           ++lpvlwhq+ll faqrYknditedq
  KKY19793.1 360 aeqssvntESAGATNIFIRTLLAKKYALPYKAVDALVFHFLRFRNSvnpdlldtdpsnnnnstkfsaqrkskDQKLPVLWHQCLLEFAQRYKNDITEDQ 458
                 ********************************************8877777766666666655555544444345************************ PP

      Bystin 259 keaLldllkkkkhkkitpeirrellasksrgv 290
                 +eaLldll  ++h+ki+pe+rrella+++rgv
  KKY19793.1 459 REALLDLLLIRGHEKIGPEVRRELLAGRGRGV 490
                 *****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.34s 00:00:01.02 Elapsed: 00:00:00.53
# Mc/sec: 3072.27
//
Query:       KKY19794.1  [L=409]
Description: putative mitochondrial enoyl [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.7e-13   48.2   0.0      2e-12   47.2   0.0    1.5  1  ADH_zinc_N    Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.018   16.1   0.0      0.032   15.3   0.0    1.4  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
      0.025   14.4   0.1      0.069   13.0   0.1    1.7  1  ADH_N         Alcohol dehydrogenase GroES-like domain


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   3.3e-16     2e-12       1     120 [.     218     345 ..     218     361 .. 0.84

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 3.3e-16
                 HHHHHHHHHHHHTT-EEEEEESSHHHH....HHHHHTTESEEEET....TTCHHHHHHHHHT..TTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECS CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseekl....elakklGadeviny....keadlverikelt..ggegvdvvfecvGsgatleaalkllkpgGrlvvvG 89 
                 gvG aa+ql k +G + i v++++e      + +++lGa+ v+ +     + ++ +++ke t  g e++++ +++vG g+  ++  k+l p  rlv++G
  KKY19794.1 218 GVGRAAIQLGKEWGLKSINVVRKREGYeelkQELEELGATKVVSEeellGR-EFRDMVKEWTngGREPIKLGLNAVG-GKNATSIAKILSPESRLVTYG 314
                 8******************999999663334667788********666633.4888888888444789*********.********************* PP

                 C.TSSEEEEEHHHHHHTT-EEEEE-SSCHHHH CS
  ADH_zinc_N  90 g.gkgeeefdlrnlllkeksilGsllgslree 120
                 g + ++  ++++ l++k++ + G+++++ +++
  KKY19794.1 315 GmSRQPVMLPTSLLIFKNIGFDGFWVSK-WSD 345
                 *555555599999*************99.554 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   5.4e-06     0.032      15     117 ..     271     384 ..     254     396 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.4e-06
                   H....HHH-T..T-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-......-HHHHHHHHHHHHHH CS
  ADH_zinc_N_2  15 e....aatgg..egvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas.....aqadileelaalieeG 100
                   +    ++t+g  e + + l++vgg+++ + + k+l+++ rlv++gg + ++ ++ p++    +++ +  +   k+s     +++++ e+++++  +G
    KKY19794.1 271 RdmvkEWTNGgrEPIKLGLNAVGGKNA-TSIAKILSPESRLVTYGG-MSRQPVMLPTSLLIFKNIGFDGFWVSKWSdrnpvEKKQTVEDVLRMTRQG 365
                   14446566555589999******9999.99999**777*******7.455566666666667777777666444447788899999*********** PP

                   H--..--EEEEEEGGGHHH CS
  ADH_zinc_N_2 101 klr..pvvdrvfpleeaae 117
                   +l+  pvv+  ++++ ++e
    KKY19794.1 366 RLKdiPVVETKWDWDTTNE 384
                   ***9777777798887766 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.2e-05     0.069       3      63 ..      82     151 ..      80     160 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.2e-05
                 EEEEEEEEEEE-HHHHHHHTTS.........TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-S CS
       ADH_N   3 evlikvkaagiCgsDlhilkgg.........kelevklplilGHEivGeveevgpevkklkvGdrVvvep 63 
                  +++++ +a i+  D+  ++g+         +  ++++  + G E v ev  +g + +++++Gd V+++ 
  KKY19794.1  82 SITLRMLTAPINPADINQIQGTypskppmtsALGTNPPAAVGGNEGVAEVIGTGAGATTVAKGDWVIMKS 151
                 57889999999999**999998777777764444444448889***********************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 2548.35
//
Query:       KKY19795.1  [L=1063]
Description: putative arginyl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.1e-105  353.3   0.1   3.1e-105  352.8   0.1    1.2  1  Amidase       Amidase
    6.9e-92  308.1   2.4    1.1e-91  307.5   2.4    1.2  1  tRNA-synt_1d  tRNA synthetases class I (R)
    1.4e-18   67.2   0.0    3.6e-18   65.9   0.0    1.7  1  DALR_1        DALR anticodon binding domain


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  352.8   0.1  5.1e-109  3.1e-105      27     451 .]     581    1050 ..     565    1050 .. 0.93

  Alignments for each domain:
  == domain 1  score: 352.8 bits;  conditional E-value: 5.1e-109
                  CCCHHHHT---TTT......TTTT-EEEEETTB--T...TSB--TTSGGGT.T-B-SS--HHHHHHHHTT-EEEEEE--SGGG-SSSSTT-TT---B CS
     Amidase   27 ealaqAakldkkrargkekgpLhGvPisvKDnidvk...gvpttaGskale.nypaekDatvverLkkaGavilgkTnmdefamgsstensvfgptr 119 
                   a a A+  d+++    ++gpL+G+  ++KDni++    g ptt+ sk+l  +y+++++atvve+L++aG ++ gkTnmdef+mgs + ++ fg + 
  KKY19795.1  581 IAPANASTNDART----SNGPLAGLQGAIKDNICTDaaiGSPTTCDSKILGpGYVSPYNATVVELLQQAGSIVTGKTNMDEFGMGSHSTHTSFGEVY 673 
                  4445555555555....6*****************98899*********9648******************************************** PP

                  BTTCTCC..B--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEEEESSHHHHHHHHHHHBS--TT- CS
     Amidase  120 NPwdksr..tpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGplarsvedlalllrvilgedpkd 214 
                     +k r  ++GGSSGGsA av  + +++a+GtDtGGS+R+PA+++g++G+KP+yg++Sr+gv+a+++sld+vG+lar+  ++  +++v+ + dpkd
  KKY19795.1  674 QLDEKGRklSVGGSSGGSALAVKDQACDFALGTDTGGSVRLPAAYTGTLGFKPSYGLLSRWGVIAYANSLDTVGILARTMGTIHKVFDVLNQFDPKD 770 
                  998888888**************************************************************************************** PP

                  TTS----HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHH.CTT-EEEEEE-CCGGGHHHHHHHHHHHHHHHHTTT-SSSSS.. CS
     Amidase  215 stssvipeesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLe.eaGhevvevelpsleealslyylilvaeassnlarylgvry.. 308 
                  +ts + p+   +++e+ ++ +k lriG++ e++  +l+p v+ a ++ l++ + ++Gh++ +++lp+ ++als+yy ++++eassnla+y+g+ry  
  KKY19795.1  771 PTSMS-PRIRSHVKEAFSQPKKVLRIGIPLEYNILELHPTVRSAWLNSLHQISiKLGHTIHPISLPRTKQALSTYYVLAPSEASSNLAKYDGIRYgr 866 
                  ****8.6799****************************************996599****************************************7 PP

                  ---SS-SCCCC..CCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCC......................BSEEEEES CS
     Amidase  309 erlsetkvlse..llpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafee......................lDvllsPt 381 
                  + ++ t++ ++  l++k+r e++g+evkrri lg+y lsaea ++y+++aqkvrrl++++f+++f +                      +D++lsPt
  KKY19795.1  867 RSPNVTDNAEDgyLYAKTRGEGFGPEVKRRILLGAYSLSAEAIDNYFIQAQKVRRLVQQDFDEVFSTpnplhdtpdhpitpsssnlspnIDLILSPT 963 
                  4444444444333899********************************************************************************* PP

                  SSSS--BCCCCCHHH.CSHHHHHGCCTTT...HHHHHTT--EEEEECCCCT....................TECEEEEEEESTT-HHHHH CS
     Amidase  382 aptpaprlgekdkti.dsytvlynlldftavvvpvnlaglpalsvpagksed...................glPvGvqvigkafqeetlL 451 
                  aptp+p l   ++    s+++ y  ++ft   vp++laglpa+s+pa    +                      +G+q+ig+ + ++++L
  KKY19795.1  964 APTPPPLLSSLSSPSsSSPLNAYMNDVFT---VPASLAGLPAISIPALPPSSssfsseapsgnndqnlkhtQQKIGMQIIGQWGTDNMVL 1050
                  ***********99989*************...************99998755689999******************************98 PP

>> tRNA-synt_1d  tRNA synthetases class I (R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.5   2.4   1.8e-95   1.1e-91      17     348 ..      72     422 ..      62     423 .. 0.95

  Alignments for each domain:
  == domain 1  score: 307.5 bits;  conditional E-value: 1.8e-95
                   SST-EEEEE----BTTS--BHHHHHHHHHHHHHHHHHHHCT-EEEEEE--B-SSTCHHHHHHHHHHHTTTTTTS-----SCCCHHHHHHHHCCCSHC CS
  tRNA-synt_1d  17 rekkkvvvdfssPniakemhvGhLrstiiGdavsrlleflGydvirlnhvGDWGtqfGlLiaylekkqdekllqeqelqdLeafykeakkdydeeei 113
                   + +kk++++fssPniake+hvGhLrstiiG+++s+l++  Gydv+r+n++GDWG+q+GlL+++ +k + e+ l+ +  ++L+++y+++   +  ee+
    KKY19795.1  72 SGRKKIIIEFSSPNIAKEFHVGHLRSTIIGGFLSNLYQGFGYDVTRMNYLGDWGRQYGLLAVGWKKFGSEEQLKANATAHLFDIYVKISALFKPEEE 168
                   5689*****************************************************************************************9999 PP

                   ...................CCHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHCT---EC.--CC.CCCCCHHHHHHHHHCTT-EEECTTC CS
  tRNA-synt_1d 114 ...................faerarnyvvkLqsgdedirklwkllvditrtelqklydrldvtlie.rGes.lykeslneivkelkkkglvkesdGa 189
                                      +  + + y++++++gde+   lw++   ++  +++k+y+rl+++  e  Ges +   +++ + + + + gl ++++Ga
    KKY19795.1 169 afkaanrngqdtsklesagLFVEVKAYFKRMEEGDEEALALWRRFRVLSIDKYKKTYARLNIFFDEySGESqVKPSTMETAEAVMDQLGLTEVDQGA 265
                   9***************9997788999**************************************9999***66666788888888999********* PP

                   EEEEECCC.TSSCCE.ECC-TTS-B-HHHHHHHHHHHHHHTT--SEEEEEEECCCHHHHHHHHHHHHCTT..SSTTTSEEEEEEE--EE-TTSSBSB CS
  tRNA-synt_1d 190 lvvfldef.gkrlgv.vvqksDGgylytttDiaaakerkeelkadkvlyvidsrqslhlqqiflilkkig..yvpeskdlehanfGmvlgkdkkkfk 282
                   +vv  +++ +k+l   +v+ ++G++ y+ +Di+aa+er +  ++++++yv+ ++q+lh+q++f il  +g  y   +k+++h nfG v      +++
    KKY19795.1 266 KVVNFKDHgAKKLEKaIVRNRNGTTNYLLRDIGAAIERFDRFEFNRMIYVVMAEQDLHMQRLFKILELMGgrYADIAKKVQHVNFGKV-----MGMS 357
                   ******99668899889999*************************************************9999777************.....67** PP

                   CSSSTC-BHHHHHHHHHHHHHHHHCCCCCCTS-CCCCHCHHHHHHHHHHHHCCCCTS-TTS-EE-- CS
  tRNA-synt_1d 283 trkGetvkLadlLdealeralqlikeknkdkvlqadelekvaeavgvgaikyaDlsknrindyifd 348
                   tr+G + +L+dlL++  e +++ ++ +n+ k + +d++ekva+ +g++ai ++D+s +rindy fd
    KKY19795.1 358 TRRGTVKFLDDLLNDVGE-SMHEVMRRNQAKYVLVDQPEKVADILGISAIMVQDMSGKRINDYPFD 422
                   *************98765.6777*****************************************98 PP

>> DALR_1  DALR anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   5.9e-22   3.6e-18      13     118 ..     438     544 ..     436     545 .. 0.93

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 5.9e-22
                 HHTTCTTCCCCHCCHCCS-SHHHHHHHHHHHTHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHCTSTTSCTHHH..HHHHHHHHHHHHHHHHHHHH CS
      DALR_1  13 rkaeeegekleeealalleeeeekeLlkalaqfpevleeaaeelephklaeylyeLaatfhkfYnkervlkeeeeel.aaaRLaLvkavrqvLangLdl 110
                 ++a+++ e+l +++ +ll+e++ ++L++ laq+p+++  +++++ep ++++yl++L ++ ++ Y+  rv++++e    + aR  L +a+rqvLang+ l
  KKY19795.1 438 QNAGYSREELVNADFSLLTEKHAIDLIRILAQYPDTVGHTLKTQEPATVLTYLFKLTHKLSSSYEVLRVIGAKEGGEtSIARASLYEAARQVLANGMGL 536
                 678888889999999999999**************************************************888655599******************* PP

                 TT----S- CS
      DALR_1 111 LGieapek 118
                 LG++++++
  KKY19795.1 537 LGLTPVDR 544
                 *****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1063 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 7374.68
//
Query:       KKY19796.1  [L=542]
Description: putative histone-lysine n-methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       940  (0.052429); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.50
# Mc/sec: 3238.29
//
Query:       KKY19905.1  [L=399]
Description: putative o-methyltransferase-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-16   57.7   0.0    1.4e-15   57.2   0.0    1.3  1  Methyltransf_2  O-methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   7.6e-20   1.4e-15      65     208 ..     233     375 ..     162     377 .. 0.85

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 7.6e-20
                     EEEEET-TTSHHHHHHHHH-.TT-EEEEEE-HHHHHHHHHHS-----TTEEEEES-TTT.S-----SEEEEESSGGGS-HHHHHHHHHHHHHH-- CS
  Methyltransf_2  65 slvDvGGGtGalakaivsay.PtikvivfDlpeVveaAkehlsageeervefvgGdffk.dslPeaDaillkrvlhDwsdekcvklLkrvkkalp 157
                      +vDv GG G  + ai + + P  k+i+ Dlp V+++ k        +++e ++ df+  +++ +a ++l+ rv+hD+    c k+Lk v  a+ 
      KKY19905.1 233 FIVDVAGGRGQDLLAIQKEFgPIGKLILQDLPIVINSLKPE----DIPGIEGMEYDFYTpQPIKNAHVYLMRRVMHDYYTPVCIKILKSVVPAMG 323
                     69*****************978889**********998777....899*********9435666******************************* PP

                     TT-EEEEEE----TTS-..--HHHHHHHHHHHHCSS-----HHHHHHHHHHCT CS
  Methyltransf_2 158 agGkvivveavlgadps..geletelvdlimlvqteGkeRteaeyeellseaG 208
                     ++ ++i+ +++l+ + +  g++e + +d+ +l +  G e+t +e++e++ + G
      KKY19905.1 324 PDSRLIICDMLLPDRVEvgGPMEPYWLDFSLLCI-SGIEKTLKEFNEIFDAVG 375
                     ***********9987662267888888***9999.9************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2482.13
//
Query:       KKY19906.1  [L=280]
Description: putative sam domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-19   70.8   0.0    1.6e-19   70.3   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    1.7e-14   54.3   0.0      5e-14   52.8   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
    1.8e-12   47.7   0.0    3.1e-12   47.0   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    3.2e-12   46.5   0.0    6.1e-05   22.9   0.0    2.2  2  Methyltransf_31  Methyltransferase domain
    1.5e-10   41.7   0.0    1.3e-09   38.7   0.0    2.1  1  Methyltransf_12  Methyltransferase domain
    0.00043   19.9   0.0     0.0013   18.3   0.0    1.8  1  MTS              Methyltransferase small domain
     0.0025   17.3   0.0     0.0057   16.1   0.0    1.6  1  Methyltransf_4   Putative methyltransferase
     0.0027   17.5   0.0     0.0053   16.5   0.0    1.4  2  Methyltransf_16  Lysine methyltransferase
  ------ inclusion threshold ------
      0.011   15.1   0.0       0.87    8.9   0.0    2.1  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.017   14.6   0.0      0.044   13.2   0.0    1.7  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.034   14.3   0.0      0.056   13.6   0.0    1.4  1  FtsJ             FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.0     1e-22   1.6e-19      14     163 ..      56     216 ..      44     218 .. 0.73

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 1e-22
  Methyltransf_23  14 erllpklraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfd.eqeaaepqgkfdlIvlrevlehvpdppellrq 104
                      +r+l+   ++ r+L++GcGtGi++  +++++   +vtgvD+ p + +++  +++ +++  d eq ++ ++++fd+I +r+ + +++d+p+l++q
       KKY19906.1  56 KRFLAPIVEPHRILELGCGTGIWSIDIADQFPsaEVTGVDIAPTQPGWV--PPNCRFELDDiEQPWTWKDNHFDFIFCRDPIASIRDFPKLISQ 147
                      34444478899****************99987789*************8..55555555540455556999*********************** PP

  Methyltransf_23 105 iatllkpgGylllse......plasl....kedrllldwlylvpag..rhi.sffsarslkelleeaGlevv 163
                       ++++kpgG+++++       +   +    +ed++++       a+  + +    +   +k ++e++G+e v
       KKY19906.1 148 CYNHVKPGGWVEFQCvmgvltS---DddslPEDSAFKAFSDNLRAScaKFGsPIDDPMRWKAQFEAQGFEEV 216
                      **************96664331...24444677777764433333332333355566777777777777765 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   3.1e-17     5e-14       1      97 []      68     156 ..      68     156 .. 0.91

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 3.1e-17
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG.BSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaed.lpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      +L+lGcGtG +++++a+++++a+vtgvDi++++   +        +n++f+  d+e+ +  +d++fD+++++  +  +   d +k+++++++++
       KKY19906.1  68 ILELGCGTGIWSIDIADQFPSAEVTGVDIAPTQPGWVP-------PNCRFELDDIEQpWTWKDNHFDFIFCRDPIASIR--DFPKLISQCYNHV 152
                      8******************99***********988654.......4679******887899**********76677665..99*********** PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      kpgG
       KKY19906.1 153 KPGG 156
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   1.9e-15   3.1e-12       1      94 [.      69     158 ..      69     160 .. 0.93

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 1.9e-15
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaekl.pfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      L++GcGtG+ + ++a+++  a+v+gvD+++++  ++      ++ +++f   d+e+    +dn fD+++++  +  + d  k++++++  +kpg
       KKY19906.1  69 LELGCGTGIWSIDIADQFpsAEVTGVDIAPTQPGWV------PP-NCRFELDDIEQPwTWKDNHFDFIFCRDPIASIRDFPKLISQCYNHVKPG 155
                      89*************999**************9888......33.489999*****659*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       KKY19906.1 156 GWV 158
                      *97 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   9.6e-08   0.00016       6      38 ..      67      98 ..      63     100 .. 0.90
   2 !   22.9   0.0   3.8e-08   6.1e-05      55     106 ..     107     157 ..     104     191 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 9.6e-08
  Methyltransf_31  6 rvlDlGCGtGeltfelaeelgpkaevvGiDise 38
                     r+l+lGCGtG  ++ +a   +p aev+G+Di +
       KKY19906.1 67 RILELGCGTGIWSIDIA-DQFPSAEVTGVDIAP 98
                     79***************.66899********87 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 3.8e-08
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggi 106
                      n++Fe  die+     ++d+ fD+i+++++++ + d +k + +  + +kpgg 
       KKY19906.1 107 NCRFELDDIEQpWT--WKDNHFDFIFCRDPIASIRDFPKLISQCYNHVKPGGW 157
                      99*********777..**********************************995 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0     8e-13   1.3e-09       1      99 []      69     158 ..      69     158 .. 0.83

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 8e-13
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsai....edakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnir 90 
                      Le+GcGtG  +  +++++p +e+tgvDi p +     ++ + +l ++e+     +++++         ++fD +++ + +  ++d  +++++++
       KKY19906.1  69 LELGCGTGIWSIDIADQFPSAEVTGVDIAPTQPgwvpPNCRFELDDIEQ----PWTWKD---------NHFDFIFCRDPIASIRDFPKLISQCY 149
                      8*******************************94444444444444443....444443.........68************************ PP

  Methyltransf_12  91 klLkpgGrl 99 
                      +++kpgG++
       KKY19906.1 150 NHVKPGGWV 158
                      *******85 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   7.9e-07    0.0013      32      64 ..      65      97 ..      40     165 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 7.9e-07
                CSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS 32 sgkvlDlGcGaGvlgaalakespeaevtlvdvd 64
                 +++l lGcG+G+ ++ +a++ p+aevt vd+ 
  KKY19906.1 65 PHRILELGCGTGIWSIDIADQFPSAEVTGVDIA 97
                468***************************975 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.5e-06    0.0057       5      34 ..      68      97 ..      64     102 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.5e-06
                    EEEET-TTSHHHHHHHHHSTTSEEEEEES- CS
  Methyltransf_4  5 vleiGcGkGeflvalAkknPdknflGiEir 34
                    +le+GcG G + +++A ++P+ ++ G++i 
      KKY19906.1 68 ILELGCGTGIWSIDIADQFPSAEVTGVDIA 97
                    79**************************97 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.3e-06    0.0053      31      80 ..      49      98 ..      43     107 .. 0.81
   2 ?   -3.7   0.0       5.3   8.6e+03     118     141 ..     123     146 ..     116     152 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.3e-06
  Methyltransf_16 31 ylekklakelganelsklsvlELGsGtGlvGlavaellpeakviltDlee 80
                     y+    +k + a  +++ ++lELG GtG+  + +a + p+a+v+  D+  
       KKY19906.1 49 YFVLLEKKRFLAPIVEPHRILELGCGTGIWSIDIADQFPSAEVTGVDIAP 98
                     555555555666678899*************************9888765 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5.3
  Methyltransf_16 118 keevDlilaaDcvYledslelLvk 141
                       +++D+i   D +     +++L++
       KKY19906.1 123 DNHFDFIFCRDPIASIRDFPKLIS 146
                      567899999998888888888875 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00053      0.87      47      82 ..      64      98 ..      49     100 .. 0.87
   2 ?    4.1   0.0     0.015        24     113     150 ..     122     159 ..     114     194 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00053
                     -TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-H CS
  Ubie_methyltran 47 rgakvlDvagGtgDlafklsdsvgekgkvvvlDine 82
                     +++++l++ +Gtg ++++++d+   + +v+++Di +
       KKY19906.1 64 EPHRILELGCGTGIWSIDIADQF-PSAEVTGVDIAP 98
                     6889*****************97.567999999975 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.015
                      S-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEE CS
  Ubie_methyltran 113 eddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlv 150
                      +d+ fD++     +  + D +k + + y  +kpGG + 
       KKY19906.1 122 KDNHFDFIFCRDPIASIRDFPKLISQCYNHVKPGGWVE 159
                      789999999999999********************763 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.7e-05     0.044     162     256 ..      65     158 ..      52     185 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.7e-05
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDevAvkvakeNaelNkveaklevalseellkeekadvivaN.ILaev..lielaedikklvkeggll 256
                  +++l +G+G+Gi +i  a ++  ++v++vDi +        N ++  +++     ++ +  + +++d i++   +a++    +l+++ +++vk+gg++
  KKY19906.1  65 PHRILELGCGTGIWSIDiADQFPSAEVTGVDIAPTQPGWVPPNCRFE-LDDIE---QPWTWKD-NHFDFIFCRdPIASIrdFPKLISQCYNHVKPGGWV 158
                 5789************636789**********998776666666543.22222...3444444.56777777424554433456777777777777776 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.4e-05     0.056      14      73 ..      54     118 ..      25     136 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.4e-05
                 HHHT-S-TT...-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCCS CS
        FtsJ  14 ekfklfkpg...ktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditdp 73 
                 ek +++ p    +++++lg+++G ws  ++ ++   + v +vD+ p +p    p++++   di +p
  KKY19906.1  54 EKKRFLAPIvepHRILELGCGTGIWSIDIADQFPS-AEVTGVDIAPTQPGwvpPNCRFELDDIEQP 118
                 44443332233388******************975.**********98766667777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1971.62
//
Query:       KKY19907.1  [L=183]
Description: putative rhomboid protein 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-05   25.5   2.3    1.5e-05   25.1   2.3    1.1  1  Rhomboid  Rhomboid family


Domain annotation for each model (and alignments):
>> Rhomboid  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   2.3   8.2e-10   1.5e-05      59     146 ..      32     115 ..       2     118 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 8.2e-10
                 HHHHHHH-S...-EESSHHHHHHHHHHHHHHHHCCCCGS----HC....CCCCCCCCCCHHHCTSSSTTTHHHHHHHHHHHHHHHHHHC CS
    Rhomboid  59 llsllfsaesesplvGaSGaifgllgallvlvprnrkllrkliia.llllllfillnlvlgllpraggvsnlAHlgGllaGlllgllll 146
                 +  ++f +++   ++G S ++f ll + +++v+r++  +     + ++   ++il+ l+++++p++   s l+Hl+G ++G+++gl  l
  KKY19907.1  32 IERCFFRSDT--AIFGTSLWVFLLLSIEAIKVYRANPFFSLGDWKiPTWTSPLILILLIYIFIPGT---SLLGHLCGCAVGYAYGLGYL 115
                 4445566666..99*******************999877766555699999*************97...***************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 1200.66
//
Query:       KKY19908.1  [L=417]
Description: putative phosphatidylinositol-phosphatidylcholine transfer protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-35  121.6   0.0    9.7e-35  119.6   0.0    1.9  2  CRAL_TRIO    CRAL/TRIO domain
    1.9e-08   34.3   0.5    5.2e-08   33.0   0.5    1.8  1  CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
     0.0004   20.5   0.0    0.00099   19.3   0.0    1.6  1  CRAL_TRIO_2  Divergent CRAL/TRIO domain
  ------ inclusion threshold ------
      0.032   14.1   0.1      0.062   13.2   0.1    1.4  1  DUF4479      Domain of unknown function (DUF4479)


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.33   1.5e+03      36      65 ..     105     134 ..      83     136 .. 0.77
   2 !  119.6   0.0   2.2e-38   9.7e-35       4     159 .]     180     343 ..     178     343 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.33
   CRAL_TRIO  36 leelvralvlvlerllkeleedgqvegvtv 65 
                 l+e+ +a+v+ l++ll++   +++ +++t+
  KKY19908.1 105 LDEVQQAQVHQLRQLLEKEGFTERLDTLTL 134
                 459999999999999987776777777765 PP

  == domain 2  score: 119.6 bits;  conditional E-value: 2.2e-38
   CRAL_TRIO   4 leggkvgihgrDkegrpvlylrlgrfdpk...kls.leelvralvlvlerllkelee......dgqvegvtvviDlkglslskmlwkp.isllkkilki 91 
                  +++++++h++Dk+grp+++ +lg++d +   k++  e+++  lv+ +e+l++   +      ++  e+++ v Dlkg++l k +  + +++l++ + i
  KKY19908.1 180 FKYYPQYYHKTDKDGRPLYIEQLGNIDLNamyKITtAERMLSNLVCEYEKLADPRLPacsrkaGKLLETCCTVLDLKGVGLMKAP--SvYGYLRQASAI 276
                 6899**************************99888899***********99984444566677889**************99999..55********** PP

   CRAL_TRIO  92 lqdnyperlgkilivnaPklfkfafklvkpfldektreKikfvspsnteatlekyidpeqlpkelGGt 159
                  q++yperlg+++++naP+ f+ +f +vk+fld++t +Ki+++++   +++l  ++++e+lpke+GGt
  KKY19908.1 277 SQNYYPERLGRLYLINAPWGFSSVFGVVKGFLDPVTVQKIHVLGS-GYQSELLAQVPKENLPKEFGGT 343
                 *******************************************66.5569*****************7 PP

>> CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.5   1.2e-11   5.2e-08       4      54 .]     115     154 ..     104     154 .. 0.68

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 1.2e-11
  CRAL_TRIO_N   4 ellahlqeseyklteeekfWltredhdda.clLRfLRArkwdvekAikrLed 54 
                  +l++ l++++              ++ d  +lLRfLRArk++ve A+++++d
   KKY19908.1 115 QLRQLLEKEGFT------------ERLDTlTLLRFLRARKFNVELAKQMFVD 154
                  344444444443............444445*******************986 PP

>> CRAL_TRIO_2  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.2e-07   0.00099      40     134 ..     250     345 ..     229     352 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.2e-07
  CRAL_TRIO_2  40 vlVyfhtglss.enkpslswlkkvystlprrykknlkklyivhpstfvktllktvlsafvsskfrkkveyvs..rleeLarkidrtqllkslPegvvs 134
                  + V++ +g+   +   ++++l+++  + ++ y+++l +ly++++ + + +++  v++ f+ +   +k++++   + +eL   + +++l+k+++ g+ +
   KKY19908.1 250 CTVLDLKGVGLmKAPSVYGYLRQASAISQNYYPERLGRLYLINAPWGFSSVF-GVVKGFLDPVTVQKIHVLGsgYQSELLAQVPKENLPKEFG-GTCQ 345
                  556666665553344579**********************************.89999999999999999651167999*************9.8765 PP

>> DUF4479  Domain of unknown function (DUF4479)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.4e-05     0.062      47      69 ..     108     130 ..     103     131 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.4e-05
     DUF4479  47 LteeqvakLnealkkaGfeeeLe 69 
                 + ++qv +L+++l+k+Gf+e+L+
  KKY19908.1 108 VQQAQVHQLRQLLEKEGFTERLD 130
                 6789*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 2524.90
//
Query:       KKY19909.1  [L=1234]
Description: putative sensor histidine kinase response [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-19   69.7   0.2    8.1e-19   68.2   0.2    1.8  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    4.1e-17   62.4   0.0    9.9e-17   61.1   0.0    1.7  1  Response_reg  Response regulator receiver domain
    1.1e-11   44.5   0.0      3e-11   43.2   0.0    1.8  1  HisKA         His Kinase A (phospho-acceptor) domain
      6e-08   33.4   0.0    2.1e-06   28.4   0.0    2.9  3  GAF           GAF domain
     0.0044   16.9   0.0      0.024   14.6   0.1    2.2  2  HATPase_c_5   GHKL domain
  ------ inclusion threshold ------
      0.022   15.1   0.0       0.38   11.1   0.0    2.9  3  GAF_3         GAF domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.2   2.7e-22   8.1e-19       3     110 ..     706     815 ..     704     817 .. 0.86

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 2.7e-22
                 HHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEE.....TEEEEEEEESSSSSTTHHHT.GTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEE CS
   HATPase_c   3 ekrLrqiisnlvdNavkfatkageieveikase.....ddlvisveDnGiGipkedlk.klfekfsqddstkrggggtGlGlsivkklvelmgGeiwve 95 
                 + +Lr++i n+ +Na+k+  +ag+ie ++++++       + + ++D+G+G++ke +  +lf +fsq  +++  + gtGlGlsivk++v+ ++G+i+v+
  KKY19909.1 706 PGGLRRVIMNVFGNAIKY-CDAGSIETSLNVTQqgrsaISVDFIIKDTGRGMSKEFMAnHLFRAFSQ--EDSF-SYGTGLGLSIVKQIVDSLDGNIEVK 800
                 679**************9.7899999999984444545667778***********9999********..3344.46*********************** PP

                 EETTTEEEEEEEEES CS
   HATPase_c  96 sepgrGttftftlpl 110
                 s+++ Gt++ ++l l
  KKY19909.1 801 SQKHVGTEVKISLSL 815
                 ********9998876 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   3.3e-20   9.9e-17       1     111 [.    1108    1230 ..    1108    1231 .. 0.91

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 3.3e-20
                    EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH..ESEEEEESSCSSSEHHHHHHHHHHCT...........TTSEEEEEESSTS CS
  Response_reg    1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek..vdlillDinmpgmdGlellkeireed...........pelpviiltahse 82  
                    vl+vdD+ ++++ll +++++ ++   aea +g ea e++k+++  +d +l+Di+mp mdGl+ +++ire +           ++  +i+lt+ ++
    KKY19909.1 1108 VLLVDDNFINLRLLVTFMKKINL-PYAEAVNGLEACEKFKSSDrpFDYVLMDISMPVMDGLTSTQHIREFErdenlkhqerqRHATIIALTGLAS 1201
                    89*****************9999.99*************999999**********************998865555544444459********** PP

                    HHHHHHHHHCTESEEEESSG-HHHHHHHH CS
  Response_reg   83 eedavealkagaddflsKpfdpeeLlkal 111 
                     +  ++a++ag++ fl+Kp++ ++L + l
    KKY19909.1 1202 ASIQEQAFRAGISHFLAKPVRFKALQQLL 1230
                    **********************9999876 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0     1e-14     3e-11       1      65 [.     523     586 ..     523     588 .. 0.93

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 1e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrie 65 
                 +++ f+a+++HELr PL++ilg +e L+++  +t  ++ ++ +ie +++ l++ ++ lLd+++i 
  KKY19909.1 523 AKTTFIASISHELRSPLHGILGSIEFLEET-LTTAYQMGLIGSIETCGKTLLDTIDHLLDYAKIN 586
                 5899***********************996.67778888************************97 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   7.1e-10   2.1e-06      36     128 ..      41     138 ..      13     140 .. 0.76
   2 ?    1.3   0.0      0.17     5e+02       1      32 [.     269     299 ..     269     379 .. 0.69
   3 ?   -4.0   0.0         6   1.8e+04      81      99 ..     455     475 ..     436     484 .. 0.70

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 7.1e-10
                 EEEEECCEEEETTSHHHH.....HHHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEEEEEE.TTEEEEEEEEEE..SSSCSHHHHHHHHHHHH CS
         GAF  36 ipqasrwlfmkngrgicg.....qvlatgqplvipdstpdprfaqynrrdllenmgirsslvvPlvn.dgelwGllvlhn..psppftreelellqvla 126
                 ip a++ ++ + g++ +      + ++  ++lvip+  +d+rf+   r+ +++  g+r +++vP++   g+ +G+ ++ +  p++p +++e++++q +a
  KKY19909.1  41 IPRADAICENVFGSSYVVnkpdgTSFN-TEALVIPNMLEDERFNT--RSYVIASKGVRFYAGVPIITrAGNKIGVYAVSHdqPRQPLNPDEVNFMQDIA 136
                 444444433333333111344446667.89******99*******..88899**************876666********665559************9 PP

                 HH CS
         GAF 127 dq 128
                   
  KKY19909.1 137 VT 138
                 76 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.17
                 SHHHHHHHHHHHHHHHHTESEEEEEEEEETTE CS
         GAF   1 dleelldtvveelrellgadrvalylpdydGl 32 
                 d+ ++  ++++ +r+ + ad ++++   ++G+
  KKY19909.1 269 DMKQIMSKACDIIRKSTRADGCVFFD-ASSGV 299
                 68899999****************99.56662 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 6
                 HHHHTTESEEEEEEEEE..TT CS
         GAF  81 llenmgirsslvvPlvn..dg 99 
                 +   +g+r+++ +Pl++  ++
  KKY19909.1 455 FKLLPGVRAVVFLPLFDyaQN 475
                 455578999999999975544 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   7.9e-06     0.024       6      93 ..     709     805 ..     705     813 .. 0.70
   2 ?   -2.2   0.0       1.3     4e+03      16      29 ..    1137    1150 ..    1137    1155 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.9e-06
  HATPase_c_5   6 lcvilgnlLdNAieacskieeekrfIrltvrekk.ksliisieNsyeg......ek...kklesskskkeehGiGlksireivkkykgnlsieaedgl 93 
                  l +++ n++ NAi  c++ +  + ++++t + ++  s+ ++i+ + +g       +   + + ++ s +   G+Gl+ +++iv++ +gn++++ ++++
   KKY19909.1 709 LRRVIMNVFGNAIKYCDAGS-IETSLNVTQQGRSaISVDFIIKDTGRGmskefmANhlfRAFSQEDSFSYGTGLGLSIVKQIVDSLDGNIEVKSQKHV 805
                  667999**********9966.355555555533313466777777666433332112335555666777889********************998875 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.3
  HATPase_c_5   16 NAieacskieeekr 29  
                   N +eac+k+++++r
   KKY19909.1 1137 NGLEACEKFKSSDR 1150
                   99*******98655 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00013      0.38      80     123 ..      93     139 ..      27     144 .. 0.67
   2 ?   -1.5   0.0         1     3e+03       1      25 [.     269     293 ..     269     295 .. 0.92
   3 ?   -1.2   0.0      0.83   2.5e+03      64      90 ..    1075    1101 ..    1044    1126 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
       GAF_3  80 draala.vPLvagr.qviGvlalastkpra.fdaedlelleslArqi 123
                 +   +a vP++++  + iGv a+ +++pr+ ++++++ +++++A  i
  KKY19909.1  93 GVRFYAgVPIITRAgNKIGVYAVSHDQPRQpLNPDEVNFMQDIAVTI 139
                 3444666*****99*********88888877***********99765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1
       GAF_3   1 sldellekllkllvkllgaevgall 25 
                 +++++++k+++ + k ++a+ ++++
  KKY19909.1 269 DMKQIMSKACDIIRKSTRADGCVFF 293
                 689******************9975 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.83
       GAF_3   64 gevvsepsfaeedglpdraalavPLva 90  
                     +s+ps++ +++l dr+a+a++L++
  KKY19909.1 1075 SHNASKPSAESRTSLSDRPATAASLYS 1101
                  334678999999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 8068.83
//
Query:       KKY19910.1  [L=860]
Description: putative nuclear import and export protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.089   12.9   0.1       0.35   11.0   0.1    2.0  1  DUF1539   Domain of Unknown Function (DUF1539)


Domain annotation for each model (and alignments):
>> DUF1539  Domain of Unknown Function (DUF1539)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   1.9e-05      0.35      26      84 ..     539     603 ..     520     619 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.9e-05
     DUF1539  26 LekeikklaqnlrdeWkkilkylskk......esseveseeaqalfrstlkkllelLkdptiske 84 
                 L++  ++l qn++ eW++il+  sk+      +++ +e++   +  +  +  ++++L++   ++e
  KKY19910.1 539 LTTLFTQLDQNITAEWERILNKRSKNaaeddlTEEMKEESVLRQFTYNAIMLVTSILDPNRDANE 603
                 888999***************99998776555222222222333334445567777775554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (860 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.48
# Mc/sec: 5415.87
//
Query:       KKY19911.1  [L=336]
Description: putative cytochrome c peroxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-45  155.9   0.0    1.7e-45  155.5   0.0    1.1  1  peroxidase  Peroxidase


Domain annotation for each model (and alignments):
>> peroxidase  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.5   0.0   9.3e-50   1.7e-45       7     229 .]      25     255 ..      19     255 .. 0.94

  Alignments for each domain:
  == domain 1  score: 155.5 bits;  conditional E-value: 9.3e-50
                 HCCCC....TTTHCHHHHHHHHHHHTT.......SSTTSCHHHTCCHHCSGGGTTTHHHHHHHHHHHHHCTT.....S-HHHHHHHHHHHHHHCTT--. CS
  peroxidase   7 aalka....drdmgpsllrlafhdcfv.......gGcdgsvlllepektapaNaslrkgldvldaikakleaacpgvvScADlialaardavelaggpl 94 
                 ++l++    d+++gp ++rla+h++++       gG +g+ ++ e+e  +paNa+l++++ +l++ik+ +++     ++++Dl++la+ +a++++ggp+
  KKY19911.1  25 DLLHQpeydDGSAGPVIVRLAWHSAGTydletdtGGTNGAGMRYEAEGGDPANAGLQHARLFLEPIKRLHPW-----ITYSDLWTLAGVTAIAAMGGPT 118
                 555555666899************************************************************.....*********************9 PP

                 .--EE---S-SSGGGS-S....-.-TS-HHHHHHHHHHHT--HHHHHHHHGGGGC-EESHH...........SS-GGGT....HHS........EETS- CS
  peroxidase  95 vpvslGRrDatessasev.snlPdptasvdelrdkfarkgltdeelvaLsGaHtiGkahcssfsrlyaaadpaldaayaaekCasgntelvdldtptkf 192
                 +p+++GR+D  ++s+      lPd    +d++r+ f r+g++d+e+vaL GaH +G++h             a++++++++           +++pt+f
  KKY19911.1 119 IPWQPGRTDYVDDSKLPPrGRLPDGALGADHIRSVFYRMGFNDQEIVALCGAHNLGRCH-------------AVNSGFEGK----------WVNNPTRF 194
                 9**************777799**************************************.............678888876..........4458**** PP

                 STHHHHHHCC........................T-EEEHHHHHHHHSCCCHHHHHHCCC- CS
  peroxidase 193 dnsyfknlle........................krgllrsDqvllsdsetralvekyaes 229
                 +n+y++ l++                        + ++l++D++l+sd+++ ++v++ya++
  KKY19911.1 195 SNQYYRLLISeewiqktlpsgivqfsavdpiseeELMMLPTDMALVSDPSFSQHVKTYAKD 255
                 **********************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 2094.69
//
Query:       KKY19912.1  [L=263]
Description: putative tsa family thioredoxin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-31  107.5   0.1    5.5e-31  107.1   0.1    1.2  1  AhpC-TSA    AhpC/TSA family
    2.9e-13   49.8   0.0    4.6e-13   49.1   0.0    1.3  1  Redoxin     Redoxin
    1.1e-11   44.3   0.2    1.9e-11   43.6   0.2    1.4  1  1-cysPrx_C  C-terminal domain of 1-Cys peroxiredoxin


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   0.1   9.2e-35   5.5e-31       2     122 ..      55     190 ..      54     192 .. 0.96

  Alignments for each domain:
  == domain 1  score: 107.1 bits;  conditional E-value: 9.2e-35
                 TSB----EEESTTCEEEECHHHTT.SEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.......SSEEEE-TTSH CS
    AhpC-TSA   2 gdkapdfelknadgetvslsdykg.kpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekes......lnfpllsDeegk 93 
                 g  ap+f++k+++ ++++++++ g ++++lf +p+d++pvCttel a+akl +ef++r+v++ig+s++++ sh ++i++++      l+fp+++D ++k
  KKY19912.1  55 GSIAPNFQAKTTH-GDIDFHKFIGdSWAILFSHPADFTPVCTTELGAFAKLKDEFDKRNVKMIGLSANDLTSHDAWIKDINevskinLQFPIIADADRK 152
                 889*******999.99******555************************************************************************** PP

                 HHHHTT-EETT.........TTECSCEEEEE-TTSBEE CS
    AhpC-TSA  94 vakaygvlkee.........kglalratfvidkegkir 122
                 va  y++++++           +++r++fvid+ +k+r
  KKY19912.1 153 VAFLYDMIDQQdltnidqkgIAFTIRSVFVIDPSKKVR 190
                 ********999*******99999*************98 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   7.7e-17   4.6e-13       3     136 ..      55     198 ..      53     210 .. 0.86

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 7.7e-17
                 TSBB---ECCEETTCEEEEEHHHHTTSE.EEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH......TT-TSEEEE-TT CS
     Redoxin   3 gdkaPdftlplaatdgnsvslsefkgkk.vvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgk......eglkfpvlsDgs 94 
                 g+ aP+f+   a+t   +++ ++f g + +++++ p+ f+P+C++e+ +++kl++++ +++v++++++a++ +   +++++       +l+fp+++D++
  KKY19912.1  55 GSIAPNFQ---AKTTHGDIDFHKFIGDSwAILFSHPADFTPVCTTELGAFAKLKDEFDKRNVKMIGLSANDLTSHDAWIKDinevskINLQFPIIADAD 150
                 66689999...4578889*****988887999***********************************98887776666666998998889********* PP

                 SHHHHHTT-TTEEE.GGG......EEE-EEEEEEETTEEEEEEESSSC CS
     Redoxin  95 aaftkalGlrleedaseg......lrtpryavidedgkvvylevepep 136
                  +++  +++  ++d ++       + +++++vid  +kv+ +   p +
  KKY19912.1 151 RKVAFLYDMIDQQDLTNIdqkgiaFTIRSVFVIDPSKKVRLTMMYPAS 198
                 ********998888888799*****************99877666655 PP

>> 1-cysPrx_C  C-terminal domain of 1-Cys peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.2   3.2e-15   1.9e-11       1      39 [.     212     250 ..     212     251 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 3.2e-15
                 HHHHHHHHT-BB-TTT.TBT-EEE---SSHHHHHHHHHH CS
  1-cysPrx_C   1 ALQladkhgvatPAnWkpGdkvivpPpateedavkryle 39 
                 +LQ+ dk+gv tP +W+ G++vivpP+++  da+k++ e
  KKY19912.1 212 SLQMGDKKGVTTPIDWQVGEDVIVPPSVSTADAKKKFGE 250
                 79*********************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 1647.65
//
Query:       KKY19913.1  [L=775]
Description: putative dicarboxylic amino acid permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   9.8e-126  420.1  35.1   9.8e-126  420.1  35.1    1.9  2  AA_permease    Amino acid permease
    5.1e-39  134.3  35.0    5.1e-39  134.3  35.0    1.9  2  AA_permease_2  Amino acid permease
    6.5e-09   35.2   6.0    6.5e-09   35.2   6.0    3.3  3  Sugar_tr       Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.6      0.21   1.2e+03       9      32 ..     107     130 ..     107     159 .. 0.80
   2 !  420.1  35.1  1.6e-129  9.8e-126       1     472 [.     257     725 ..     257     729 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.21
  AA_permease   9 gviGtglfvglgvvlsqaGplgal 32 
                  ++ G +++ gl  +l+++Gp+g++
   KKY19913.1 107 NIAGFVVLYGLMQALGHGGPGGTI 130
                  578999**************8883 PP

  == domain 2  score: 420.1 bits;  conditional E-value: 1.6e-129
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ia+gg+iGtgl++g+g++l+qaGp+++l++y l+g+ +++vm++lge+a+ +p s+gf+ ya r+ ++ lGf+ G+ y+f +i++ +++lta +
   KKY19913.1 257 HITMIAIGGAIGTGLIIGTGKALAQAGPGSILISYTLVGFLVYMVMCALGEMASWIPLSSGFTGYADRYCDKCLGFALGWTYWFKYIITTPNQLTAGA 354
                  99************************************************************************************************ PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeee 195
                   +iq+w   + ++   v++avf+++++++n++g++++geaef+l+++k+i i + i+++ +l  gg+pn+++ gfr+++d+g+     + p+ a+ + 
   KKY19913.1 355 LVIQYWVDRDRVN-PGVFIAVFWIAIVLLNYLGIRFFGEAEFWLSSVKVIVICGIILLSLVLALGGGPNHDRtGFRYYNDPGA-----FAPYIAEGAW 446
                  ******7788888.*********************************************************************.....888877889* PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa....aspfvifikesgvsvla 289
                  g f++f s +v++ fa+ G+elv+++ gE+++P+ksiP+ai+ +++ri++fYvls+ll+g+++p++++ l n+++      aspfv +ik +g+ vl+
   KKY19913.1 447 GKFLGFWSTLVTATFAYLGTELVGVTVGEAQNPRKSIPRAIRLTFYRILFFYVLSVLLLGMIIPYDSPELANAVNASssaaASPFVAAIKVAGIQVLP 544
                  ***********************************************************************977766999****************** PP

  AA_permease 290 plinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsy 387
                   l+n +il+ ++s+ans ly+asR++y l+ +g aP+++++ +krgvP+ a+++s++++l+a+++ s  ++  +vfn++++++++ gl++w++i++s+
   KKY19913.1 545 GLLNGCILLFVFSAANSDLYIASRTIYGLSVEGNAPRIFRRTDKRGVPIFALAISAAVALIAFMNVSDDSS--KVFNYFVNLVTIFGLLTWISILVSH 640
                  ***************************************************************88888888..************************* PP

  AA_permease 388 lrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvkn 472
                  + f +a ++qg+s + l fka+++++g++ ++a++ +i+l+ ++  +++ +++ +++++ +f+  yl+++l+li+++g+k++ k 
   KKY19913.1 641 IYFVRARQAQGISPDTLAFKAPFGIYGSYGAVAFCALIALTKNFSVFVRDPDSYGNFDYKNFITGYLGIPLYLIMIFGYKFFMKS 725
                  *********************************************************************************9985 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   1.1      0.13   7.9e+02      94     397 ..      57      95 ..       2     118 .. 0.55
   2 !  134.3  35.0   8.6e-43   5.1e-39       5     399 ..     257     680 ..     253     709 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.13
  AA_permease_2  94 silsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffpngwpg 189
                    ++                                                                                              
     KKY19913.1  57 IV---------------------------------------------------------------------------------------------- 58 
                    22.............................................................................................. PP

  AA_permease_2 190 vllgllivlwsfdGfesaanvseevkkkdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvilialsll 285
                                                                                                                    
     KKY19913.1   - ------------------------------------------------------------------------------------------------   -
                    ................................................................................................ PP

  AA_permease_2 286 gaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisylll.iigalilrkkrphlk 380
                                                                                                 ++l i g+++  +  ++ +
     KKY19913.1  59 ----------------------------------------------------------------------------LAVLlIPGVIVGAWLTNVIG 78 
                    ............................................................................11111223333333333333 PP

  AA_permease_2 381 rpgkilvaiigalfllf 397
                    r +  +++++g +++ f
     KKY19913.1  79 RRYTSMLGFFGYVVFGF 95 
                    33333333333333333 PP

  == domain 2  score: 134.3 bits;  conditional E-value: 8.6e-43
  AA_permease_2   5 safalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsv 98 
                      ++++ig +ig+g ++ +  ++a +gp +il+  + v+ ++++v+ ++ E++s +p s G  +y+ + + k ++f  +w++wf y+++++  l++
     KKY19913.1 257 HITMIAIGGAIGTGLIIGTgkALAQAGPGSILISYTLVGFLVYMVMCALGEMASWIPLSSGFTGYADRYCDKCLGFALGWTYWFKYIITTPNQLTA 352
                    6789**********999888866666666555444444444478999*******9***************************************** PP

  AA_permease_2  99 aasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.......stetdt...... 181
                    +a  ++++++ d     +   ++++++ i ++l+n++gi+  + + ++l  +k+ +++  +i+l l+++ ggg +                     
     KKY19913.1 353 GALVIQYWVDRDR----VNPGVFIAVFWIAIVLLNYLGIRFFGEAEFWLSSVKV-IVICGIILLSLVLALGGGPNHDrtgfryyN----Dpgafap 439
                    ********99753....334677788888999**********************.677778888888888888875546555541....0444222 PP

  AA_permease_2 182 .ffpngwp...gvllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddei.......anlsnlgsvaalff 264
                     +  + w    g++++l ++++++ G e + + + e+++  k +p+ai + +  +l++y+l  +++ +++p d+        a++s   s++ +  
     KKY19913.1 440 yIAEGAWGkflGFWSTLVTATFAYLGTELVGVTVGEAQNprKSIPRAIRLTFYRILFFYVLSVLLLGMIIPYDSPelanavnASSSAAASPFVAAI 535
                    24444444433369999*******************8887578*******************************9777665433344445566667 PP

  AA_permease_2 265 eavggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas..saaynfllsvsslgl 358
                    + +g +v+ ++++ +i l ++ a+n+ ++++sr+++ l+ +g  Pr f++++k+g pi a+ ++a v+li ++ +  ++  s+ +n+ +++ +++ 
     KKY19913.1 536 KVAGIQVLPGLLNGCILLFVFSAANSDLYIASRTIYGLSVEGNAPRIFRRTDKRGVPIFALAISAAVALIAFMNV--SDdsSKVFNYFVNLVTIFG 629
                    777778**************************************************************8776444..44779************** PP

  AA_permease_2 359 iisyllliigalilrkkrphl...kr...pgkilvaiig.....alfllfll 399
                    ++ ++ ++++ ++  + r  +   +    + k++++i g     a+++l++l
     KKY19913.1 630 LLTWISILVSHIYFVRARQAQgisPDtlaF-KAPFGIYGsygavAFCALIAL 680
                    *******99999666555544354326642.345555553332244444444 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.9   1.5    0.0065        39     102     124 ..       2      24 ..       1      57 [. 0.72
   2 !   35.2   6.0   1.1e-12   6.5e-09     293     394 ..      56     153 ..      43     161 .. 0.86
   3 ?   -5.5   2.7       2.3   1.4e+04     324     368 ..     375     420 ..     369     421 .. 0.61

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.0065
                 -TGGGGGHHHHHHHHHHHHHHHH CS
    Sugar_tr 102 vevlivgRvlvGigvGlasvlvP 124
                 ++ li+ R ++G+gvG+++  + 
  KKY19913.1   2 LWYLIIVRGISGVGVGGEYPSSA 24 
                 799**************997654 PP

  == domain 2  score: 35.2 bits;  conditional E-value: 1.1e-12
                 HHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHH CS
    Sugar_tr 293 tiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaia 391
                  i++ v+ +  ++v+++l   +GRR++ +lG++g+ ++ +i+g++ + l+++      +++v++ l+ al   g+g+++ ++++E +p++ R+ ++a++
  KKY19913.1  56 PIVLAVLLIPGVIVGAWLTNVIGRRYTSMLGFFGYVVFGFIIGGCYDKLKEN----IAGFVVLYGLMQALGHGGPGGTIGLISTEAYPTAARGMGYAVS 150
                 4677777788889999***************************666666666....68899999999******************************99 PP

                 HHH CS
    Sugar_tr 392 vav 394
                  a 
  KKY19913.1 151 IAF 153
                 875 PP

  == domain 3  score: -5.5 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHH..HHHHTTSS.....CHHHHHHHHHHHHHHHTTTT CS
    Sugar_tr 324 aagmaicfvilgivalllvaks..kaasivaivfialfialfalgwg 368
                 + ++++++ +lg + ++++a+   ++ ++++i +i+l   + alg g
  KKY19913.1 375 FWIAIVLLNYLG-IRFFGEAEFwlSSVKVIVICGIILLSLVLALGGG 420
                 444455555555.7777777777777777777777777666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.48
# Mc/sec: 4883.87
//
Query:       KKY19914.1  [L=583]
Description: putative siderophore iron transporter mirc [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.1e-135  452.1  25.5   2.4e-135  451.9  25.5    1.0  1  Sugar_tr  Sugar (and other) transporter
      1e-25   90.4  24.6      1e-25   90.4  24.6    2.1  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.091   13.0   7.6      0.043   14.1   2.8    3.0  3  DUF2530   Protein of unknown function (DUF2530)
       0.66   10.1   3.6        1.1    9.4   0.1    2.8  3  SirB      Invasion gene expression up-regulator, SirB


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  451.9  25.5  5.3e-139  2.4e-135       3     452 .]      49     510 ..      47     510 .. 0.95

  Alignments for each domain:
  == domain 1  score: 451.9 bits;  conditional E-value: 5.3e-139
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH....HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTS CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskee.ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkn 100
                 +++++gg++fgYdtg i++fl++++f+ +fg+ ++++ ++  s+v+sgliv+++++G +iG+l+a +++dr+GR++s+ + +v+f+ig ++q+++    
  KKY19914.1  49 VLVSMGGCIFGYDTGQISGFLAMPDFLERFGQFRESTGEYYfSDVRSGLIVGMLSIGTLIGALVAAPIADRIGRRPSISFWCVIFCIGLIVQMTSV--D 145
                 5789**************************977666655555******************************************************..5 PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-.TTHHHHHHHCCHHHHHHHHHHGGGS---HHH CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl.nktsn.adgwrillglqlvpallllilllflPESPry 197
                 +++++++gR+++G+gvG+ s lvPmy++E Ap+++Rgal+s yql +t+Gi++aa++++g  ++ ++ a+ wr+++g+ +v+a +l i+++f+PE+Pry
  KKY19914.1 146 KWYQVMMGRWVAGLGVGALSLLVPMYQAETAPPHIRGALISTYQLLVTLGIFLAACINYGCyEHQRDnATSWRLPIGIGFVWAFILGIGIMFFPETPRY 244
                 6************************************************************65555589****************************** PP

                 HHHTT-HHHHHHHHHHHHHC.HHHHHHHHHHHHHHHHHHH........HTTHHHHSH......HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH CS
    Sugar_tr 198 lvekgkeeeakevlaklrge.edadrelaeekdsleaeqeee...kaswkellsskt...vrqrlligvvlqifqqltGinaimyysptifenlglsks 289
                  + kg++e ak+++ k+ g+ ++++ ++  e ++++a+ ++e   + s++ ++++ +   + +r+ +g++lq+fqqltG n+++yy+++ife++g+++s
  KKY19914.1 245 VYRKGDHEGAKKTMMKVYGTsSENHYSIHHELAEIDAKLRAEsatTGSVRDFFQMLSapkMAYRIALGMLLQMFQQLTGANYFFYYGTVIFESTGIDNS 343
                 ****************666548888899999999999988888889*********99999*************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH...HHHHTTSS.......CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTT CS
    Sugar_tr 290 llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg.ivalllvaks....kaasivaivfialfialfalgwgpvpwvlvsElfpqsv 383
                 +++ +i+  +nf +tf ++++v++ GRR+ l++G++ m++cf+i++ i  + l+  +    +  +i++i f a+fi+ fa++wgp++w ++ El+p++ 
  KKY19914.1 344 FVTQMILNGINFGTTFYGLYIVEHYGRRKSLIVGSTAMFVCFLIFAsIGHFSLNRDEptktERTGIAMICFAAFFIFSFATTWGPMIWTIIGELYPSRY 442
                 **********************************************98888777777899999************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 384 Rskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 R+k++a+a+a+nwl+nfl s+++p+it+ai  + +++vfag++vl+ + v+ff +e  grtlee+++++
  KKY19914.1 443 RAKGMALATASNWLWNFLLSFFTPFITSAID-FQFGYVFAGCNVLGGLLVYFFAIEGQGRTLEELDTMY 510
                 *******************************.**********************************996 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4  24.6   2.3e-29     1e-25       5     348 ..      55     457 ..      51     460 .. 0.80
   2 !    9.4  11.4   9.7e-05      0.43      89     178 ..     414     501 ..     407     537 .. 0.73

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 2.3e-29
       MFS_1   5 aflsalarsilgpalpl.alaedlg..........ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslwlllv 90 
                 +++ +++ + ++ +l +    e +g          +s    gl++++ ++g+++++l++++++dr+Grr+ + +  ++f++g l+  ++    ++ ++ 
  KKY19914.1  55 GCIFGYDTGQISGFLAMpDFLERFGqfrestgeyyFSDVRSGLIVGMLSIGTLIGALVAAPIADRIGRRPSISFWCVIFCIG-LIVQMTsvDKWYQVMM 152
                 55555555555555555566666666666666666888889*****************************************.7777744466669*** PP

       MFS_1  91 lrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.....Wravfyilaivsllafvlfllllpeepperkrksp 184
                 +r ++Glg gal  ++  + a+ +p+  rg  i+ +++ + lG+ l++ +   ++++       Wr++  i  + ++++++ +++++pe+p+   rk +
  KKY19914.1 153 GRWVAGLGVGALSLLVPMYQAETAPPHIRGALISTYQLLVTLGIFLAACINYGCYEHQRdnatsWRLPIGIGFVWAFILGI-GIMFFPETPRYVYRKGD 250
                 *******************************************************776689999***************99.66*********999999 PP

       MFS_1 185 keee...............................kgtgpaplvpawkallkdpvl.w.illialllfffgfsg.....lltllplylqevlglsglll 245
                  e                                 ++    ++++ +++l +++ + + i+l +ll +f    +     ++++ +++  e  g+++   
  KKY19914.1 251 HEGAkktmmkvygtssenhysihhelaeidaklraESATTGSVRDFFQMLSAPK-MaYrIALGMLLQMFQQ--LtganyFFYYGTVI-FESTGIDN-SF 344
                 9999999*******9999999999988887766555555555555555555555.5234333333333222..23466366666664.89999994.66 PP

       MFS_1 246 aglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt...........ssavllllvlvliGfglgfv.fpsllalasdlappe 332
                 ++   ++l  ++++  + + +++ ++grr+ l+++  ++++++l++a ++++            + ++++++ +++ f ++++  p++++++ +l+p +
  KKY19914.1 345 VT--QMILNGINFGTTFYGLYIVEHYGRRKSLIVGSTAMFVCFLIFASIGHFslnrdeptkteRTGIAMICFAAFFIFSFATTwGPMIWTIIGELYPSR 441
                 66..8899999999999999****************************************8765555555555555553333359************** PP

       MFS_1 333 eagtasglfntagslg 348
                 ++++ ++l++  + l 
  KKY19914.1 442 YRAKGMALATASNWLW 457
                 ********99887665 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 9.7e-05
       MFS_1  89 lvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeeppe 178
                 +++ ++ +++  +  p++ ++i +++p + r+++++l++a++ l   l   + ++++s++ ++   y++a+  +l+++l++++  e + +
  KKY19914.1 414 FAAFFIFSFA-TTWGPMIWTIIGELYPSRYRAKGMALATASNWLWNFLLSFFTPFITSAIDFQFG-YVFAGCNVLGGLLVYFFAIEGQGR 501
                 4445555555.58889999*******************************************966.555556666667656665444333 PP

>> DUF2530  Protein of unknown function (DUF2530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.7   7.6e+03      48      58 ..      96     106 ..      93     123 .. 0.71
   2 ?   14.1   2.8   9.5e-06     0.043      14      66 ..     123     176 ..     117     184 .. 0.85
   3 ?   -2.5   0.0       1.4   6.2e+03      24      60 ..     328     364 ..     305     372 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.7
     DUF2530  48 GlvvGllGlai 58 
                 Gl+vG+l ++ 
  KKY19914.1  96 GLIVGMLSIGT 106
                 77888876654 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 9.5e-06
     DUF2530  14 rpvivvgtllWlvalvvllvvgdales.wlpvclaGlvvGllGlaiflwQRrAa 66 
                 rp i   +++++++l+v +++ d++ + ++   +aGl+vG+l l + + Q + a
  KKY19914.1 123 RPSISFWCVIFCIGLIVQMTSVDKWYQvMMGRWVAGLGVGALSLLVPMYQAETA 176
                 6889999**********9988887766267789*************99998776 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.4
     DUF2530  24 WlvalvvllvvgdaleswlpvclaGlvvGllGlaifl 60 
                 +  ++v++  +g + + ++++ l G+  G   +++++
  KKY19914.1 328 FYYGTVIFESTGIDNSFVTQMILNGINFGTTFYGLYI 364
                 4455555555555555566667777777776666665 PP

>> SirB  Invasion gene expression up-regulator, SirB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.85   3.8e+03      77     112 ..     107     142 ..     103     147 .. 0.65
   2 ?   -0.1   0.1      0.21   9.3e+02      45      79 ..     187     227 ..     165     244 .. 0.64
   3 ?    9.4   0.1   0.00024       1.1      71     117 ..     379     425 ..     370     428 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.85
        SirB  77 lvvyivlgvvalkrakskklrllafvlAlvvflyiv 112
                 l+  +v++ +a + ++++++++  +++ +++++ + 
  KKY19914.1 107 LIGALVAAPIADRIGRRPSISFWCVIFCIGLIVQMT 142
                 666777777777777777766666666666665554 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.21
        SirB  45 vdtlLllsgiaLlvllglspftka......WltaKlvllvv 79 
                 ++ lL++ gi L++ +++    ++      W +   +++v 
  KKY19914.1 187 TYQLLVTLGIFLAACINYGCYEHQrdnatsWRLPIGIGFVW 227
                 56678888888888877655522223455565555555543 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00024
        SirB  71 taKlvllvvyivlgvvalkrakskklrllafvlAlvvflyivslAlt 117
                 ta++v+++++ ++g++ l+r++ +k+ ++++++ +++ ++i+s+A+t
  KKY19914.1 379 TAMFVCFLIFASIGHFSLNRDEPTKTERTGIAMICFAAFFIFSFATT 425
                 6899*****************99999999999999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4033.99
//
Query:       KKY19915.1  [L=619]
Description: putative iron transport multicopper oxidase fet3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.5e-46  154.9   4.5    6.9e-40  136.0   0.1    3.5  3  Cu-oxidase_2  Multicopper oxidase
      2e-44  150.4   2.5    9.5e-41  138.6   0.5    3.7  3  Cu-oxidase_3  Multicopper oxidase
    2.2e-34  118.9   1.8      1e-31  110.2   0.4    2.8  3  Cu-oxidase    Multicopper oxidase


Domain annotation for each model (and alignments):
>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.5   2.6e-05      0.16      35     133 ..      58     143 ..      35     147 .. 0.75
   2 !    6.9   0.0   0.00081       4.8      25     100 ..     193     268 ..     168     279 .. 0.74
   3 !  136.0   0.1   1.2e-43   6.9e-40       1     135 [.     363     495 ..     363     497 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.6e-05
                   EEEETTEEEEEEEEE-SSS.-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES.S-EEEEEEESSHHHHHTT-EEE CS
  Cu-oxidase_2  35 itlpkgevveiviqnntkl.pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfkadnpGvwllHCHilwHldqGmalq 130
                   i+++ g++v i  +nn      ++H+HG      ++g+           +++ p++    ++ppg+ + + f+ +++G + +H+H       G+ + 
    KKY19915.1  58 IDVDVGDRVVIHAHNNLGNeSTSLHFHGI----YQNGST----------EMDGPIQVSQCEIPPGSSFLYNFTINQTGTYWYHSHSKAQYPDGLRGP 140
                   56666666666666655555788999997....322222..........4688999999**************************887666666666 PP

                   EEE CS
  Cu-oxidase_2 131 fvv 133
                   ++v
    KKY19915.1 141 LIV 143
                   655 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00081
                   TCCTTTSSEEEEEETTEEEEEEEEE-SSS.-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEE CS
  Cu-oxidase_2  25 geefsentnvitlpkgevveiviqnntkl.pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggw 100
                   + + +++  +i+++ +++ +i + n + +  + f + Ghdf++++ ++ + +e++++s  +  + +r t+ +  + +
    KKY19915.1 193 NLMNDTQNLTIQVEPNKTYKIRLINIGAFaGQYFWIQGHDFDIIEVDGIT-TERQKASQIYLSASQRYTILLTTKNE 268
                   335557788899999**********99998899***********999888.44445554555666667776665544 PP

  == domain 3  score: 136.0 bits;  conditional E-value: 1.2e-43
                   XXS-SCCCCCCCEEEEEEEEEEEETCCTTTSSEEEEEETTEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECC..CCCCTCCSSGCCGSSCBSEEEE CS
  Cu-oxidase_2   1 dvppklptllqltsgneeaseitngeefsentnvitlpkgevveiviqnntklpHPfHlHGhdfqvlgrgpgn..dpeedpksynlenpvrrdtvqv 95 
                   +v+p++ptl+++ +++e a+   + ++++  tn+++l+ g+++eiv++n+++++HPfHlHGh fq ++rg ++  d ++++++++   p+rrdt++v
    KKY19915.1 363 YVQPTVPTLYSVLTSGELAT---DATIYGSYTNTFVLERGQIIEIVVNNHDTGKHPFHLHGHAFQAVARGVDEsgDYDAENTTLS-AIPMRRDTFMV 455
                   6899*********8888887...888*******************************************9999765555555555.59********* PP

                   -TTEEEEEEEES.S-EEEEEEESSHHHHHTT-EEEEEEEC CS
  Cu-oxidase_2  96 ppggwvairfkadnpGvwllHCHilwHldqGmalqfvvrp 135
                   +p+g++++rf+adnpGvw++HCH++wHl++G+ +++v+ p
    KKY19915.1 456 QPDGYIVMRFRADNPGVWIFHCHLEWHLSSGLLATMVEAP 495
                   ************************************9976 PP

>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.5   1.6e-44   9.5e-41       3     118 ..      32     147 ..      30     148 .. 0.97
   2 ?    3.0   0.0     0.016        95      28      58 ..     393     423 ..     381     435 .. 0.76
   3 !    6.0   0.0    0.0019        11      74     113 ..     454     492 ..     448     495 .. 0.91

  Alignments for each domain:
  == domain 1  score: 138.6 bits;  conditional E-value: 1.6e-44
                   EEEEEECTTEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-S.SS-B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEEEEEE CS
  Cu-oxidase_3   3 tektvsplggterevitvNgqfpgptievregdtvvvnvtNkl.dentsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtlwYhs 98 
                    + + +p+g +er+vi++Ngq+p p+i+v+ gd+vv++ +N+l +e+ts+h+hG+ q++++ mDG+ +v+qc i+pg+sf y+ft++q  gt+wYhs
    KKY19915.1  32 GWLNRNPDGMVERPVIGINGQWPIPRIDVDVGDRVVIHAHNNLgNESTSLHFHGIYQNGSTEMDGPIQVSQCEIPPGSSFLYNFTINQ-TGTYWYHS 127
                   567899**********************************************************************************.******** PP

                   --TTHHHTT-EEEEEEE-HH CS
  Cu-oxidase_3  99 hlslqqaaGlaGaiiiedke 118
                   h+++q+ +Gl G++i++d++
    KKY19915.1 128 HSKAQYPDGLRGPLIVHDPS 147
                   *****************986 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.016
                   EEEEETT-EEEEEEEE-SSS-B-EEEET--S CS
  Cu-oxidase_3  28 tievregdtvvvnvtNkldentsihwhGlqq 58 
                   t+ +++g+ +++ v N+ + +   h+hG   
    KKY19915.1 393 TFVLERGQIIEIVVNNHDTGKHPFHLHGHAF 423
                   778899***********96666666666443 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0019
                   -B-TT-EEEEEEE--S-SEEEEEEE--TTHHHTT-EEEEE CS
  Cu-oxidase_3  74 piqpgesftyrftvkqqagtlwYhshlslqqaaGlaGaii 113
                   ++qp    + rf++++  g   +h hl+++  +Gl  +++
    KKY19915.1 454 MVQPDGYIVMRFRADN-PGVWIFHCHLEWHLSSGLLATMV 492
                   7999************.*************9999988775 PP

>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0     0.001       6.2     103     136 ..      95     128 ..      44     141 .. 0.80
   2 !  110.2   0.4   1.7e-35     1e-31       2     158 ..     157     303 ..     156     304 .. 0.92
   3 ?   -1.7   0.0      0.46   2.7e+03      76      97 ..     407     428 ..     360     459 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.001
                 S.EEEESCEEE-TTEEEEEEEEE-SSSEEEEEEEE CS
  Cu-oxidase 103 e.pvevdsldIavGqrysvlvtanqapgnYwivas 136
                 + p +v++ +I +G+++   +t nq +g+Yw++ +
  KKY19915.1  95 DgPIQVSQCEIPPGSSFLYNFTINQ-TGTYWYHSH 128
                 35999***********9999999*9.******983 PP

  == domain 2  score: 110.2 bits;  conditional E-value: 1.7e-35
                 EEEEEEEEETCBCTTSCBC.HSSCHCHHHHHTT--SEEEETTBSS.......CTTTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEEEETCE CS
  Cu-oxidase   2 eyvitlsDwyhkdakelekellasgkapadtppvpdavlingkggfnatladkdgaslatltvepgktyrlriinvsaddslnfsIeGHkltVvevDgv 100
                 e v+tlsDwyh+++ +l k  + s ++p++++pvp++ l+n              +++ t++vep+kty++r+in++a     f+I+GH + ++evDg 
  KKY19915.1 157 ELVVTLSDWYHDQMPGLLK-WFISVANPTGAEPVPKSNLMND-------------TQNLTIQVEPNKTYKIRLINIGAFAGQYFWIQGHDFDIIEVDGI 241
                 689****************.77777889**************.............3579**************************************** PP

                 TTSEEEESCEEE-TTEEEEEEEEE-S.SSEEEEEEEE...GSSSCHHHHTTSEEEEEEEEST CS
  Cu-oxidase 101 yvepvevdsldIavGqrysvlvtanq.apgnYwivas...grsnlieafengtaaailryse 158
                  +e  + +++ +++ qry++l+t+++ +++nY+i+as     +++ ++  n++ + +l+y+ 
  KKY19915.1 242 TTERQKASQIYLSASQRYTILLTTKNeTTSNYAIMASmdeDLFDTVPSSLNPNVTSYLVYDS 303
                 ************************7758*********8885566788999999999999985 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.46
                 EESSS-BEEEEETSB-EEEEEE CS
  Cu-oxidase  76 nvsaddslnfsIeGHkltVvev 97 
                 n      ++f ++GH ++ v+ 
  KKY19915.1 407 NNHDTGKHPFHLHGHAFQAVAR 428
                 4444567889999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.54
# Mc/sec: 3476.59
//
Query:       KKY19916.1  [L=353]
Description: putative plasma membrane iron permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-79  265.9   5.5    5.1e-79  265.6   5.5    1.0  1  FTR1      Iron permease FTR1 family
     0.0027   17.9   1.5     0.0091   16.3   0.4    2.3  2  DUF3382   Domain of unknown function (DUF3382)
  ------ inclusion threshold ------
       0.73    9.2   7.5       0.17   11.3   0.3    2.6  2  DUF4173   Domain of unknown function (DUF4173)


Domain annotation for each model (and alignments):
>> FTR1  Iron permease FTR1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.6   5.5   8.5e-83   5.1e-79      16     304 ..       9     307 ..       8     309 .. 0.96

  Alignments for each domain:
  == domain 1  score: 265.6 bits;  conditional E-value: 8.5e-83
        FTR1  16 slivsvllallkqtqretdk........lqvwagialavllalaigqafasitaalqkdkalieeellegvlsliavvviswmilwmrrvgkklkeeve 106
                 ++ivs+ll++lkq +  +++        +qvw+g++l++l+++ +g+++++++++l+kd ++++e  +egv++lia+++i++m+ + +r ++kl+++++
  KKY19916.1   9 VIIVSILLSFLKQNIGPDKDpavyrrlrKQVWVGTLLGLLICIVVGCGLIGAFYGLGKDAWSGAEYVWEGVFGLIASIIITVMGAALLR-VSKLQAKWR 106
                 589**********777777788888888*************************************************************.********* PP

        FTR1 107 qklakavaeiknrekaa.qkgekgsekwalfilsFlivlREGlEavLfvaaivaytvkrvsalilgvvlGaliavvlglliyrglvklslqsffilegf 204
                 +kla+a++ ++ ++ +a    +++ ek+a+f+l+F++vlREGlEav+f+++++  ++  +s+++l+ v+G+ +++++g+liy +++   lq f+i++++
  KKY19916.1 107 VKLAAALEAKDGPKGKAsTRFKRWLEKYAMFVLPFITVLREGLEAVVFIGGVSLGLP--ASSIPLATVVGLGAGCLVGVLIYKFGNLAPLQYFLIVSTC 203
                 **********99998888***************************************..9*************************************** PP

        FTR1 205 lLllvaagLfsvg..tlellekaeacngkdyiefkkskslskisllslllvaflavereg...leivlaliGwantgplg.livyaavwlvvlillgll 297
                 +L+lvaagLfs +  ++e + +++  +g+d+ e ++++++++i+  s+++v+++++e +g   + i++a++Gw+n+++lg +i+y+++w+vv+ ++  +
  KKY19916.1 204 VLYLVAAGLFSRAiwYFEQNAFNNL-TGGDAAETGSGAGSYDIRV-SVWHVNCCNPELNGgsgWGIFNAILGWQNSATLGsVIGYNLYWVVVISAFICM 300
                 *************999999999999.*******************.***********************************************999888 PP

        FTR1 298 liklgvr 304
                  + ++ +
  KKY19916.1 301 RYNEKKG 307
                 8777665 PP

>> DUF3382  Domain of unknown function (DUF3382)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.13     8e+02      41      79 ..       2      40 ..       1      54 [. 0.63
   2 !   16.3   0.4   1.5e-06    0.0091       9      86 ..      50     131 ..      42     145 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.13
     DUF3382 41 vaiavavvfvgqLlrplllqalkarkklkkveskadgvl 79
                v ++++ v ++++l++ l q++++ k+++   +  ++v 
  KKY19916.1  2 VNVFAVPVIIVSILLSFLKQNIGPDKDPAVYRRLRKQVW 40
                557788889999999999999988666655544444443 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1.5e-06
     DUF3382   9 aallalvlfvpilGl.qleldgtrlvleprwglvaiavavvfvgqLlrplllqalkarkklkkveskadgvlvl...tqrwi 86 
                 + ++  +l++ + Gl +++ +g++ v+e+ +gl+a ++++v+   Llr   lqa  ++k ++ +e+k+ + ++    ++rw+
  KKY19916.1  50 CIVVGCGLIGAFYGLgKDAWSGAEYVWEGVFGLIASIIITVMGAALLRVSKLQAKWRVKLAAALEAKDGPKGKAstrFKRWL 131
                 556778999**************************************99877776665666666665555554467755554 PP

>> DUF4173  Domain of unknown function (DUF4173)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   2.9e-05      0.17       8      59 ..      47      97 ..      41     113 .. 0.75
   2 ?    0.8   1.5     0.048   2.8e+02     113     134 ..     196     217 ..     161     227 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.9e-05
     DUF4173  8 llfvliqiayLfggeekvslpegltyaeyArrGffqLlavtllnllvvlval 59
                ll +++    L+g++  +  ++  + aey+ +G+f L+a+++++++  +++ 
  KKY19916.1 47 LLICIVVGCGLIGAFY-GLGKDAWSGAEYVWEGVFGLIASIIITVMGAALLR 97
                5566666667777764.7888999*******************998665554 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.048
     DUF4173 113 vfllllalvlllvlvkilkrkf 134
                  fl++ ++vl lv++ ++ r++
  KKY19916.1 196 YFLIVSTCVLYLVAAGLFSRAI 217
                 3444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.53
# Mc/sec: 2011.56
//
Query:       KKY19917.1  [L=449]
Description: hypothetical protein UCRPC4_g04344 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 3133.45
//
Query:       KKY19918.1  [L=285]
Description: putative carbon-nitrogen family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-24   86.2   0.4    1.2e-23   83.8   0.4    1.8  1  CN_hydrolase  Carbon-nitrogen hydrolase
  ------ inclusion threshold ------
       0.14   12.2   0.0       0.28   11.2   0.0    1.5  1  PCSK9_C2      Proprotein convertase subtilisin-like/kexin typ


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.4   1.4e-27   1.2e-23       1     254 [.       5     247 ..       5     253 .. 0.87

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 1.4e-27
                   EEEEEEBB-STTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTBSSSHHHHHHHHBHSSSHHHHHHHHHHHHHTEEEEEEEEEEECCTTEEEEEEE CS
  CN_hydrolase   1 rvAvvQlpqkaadleanlqklleliaeAarkgadLivlPElfitgykeeahfleaAeaglgetlallaalarkngiavvigliereltngklqaynt 97 
                   ++A++Ql       ean++++ ++i++Aa kga+L vlPE+ +  +   +  ++            +a  a+++  +v   +   +  n+ +   n 
    KKY19918.1   5 KIAAIQLYCEPLAPEANHKRACDFIRKAAAKGAQLAVLPEFHLNAW---EPSHP-----------EWAIQAAQYRKYVESYCGDADANNPLF--RNV 85 
                   6899998888899*******************************99...44333...........456666777777766666664356666..*** PP

                   EEEEETTSEEEEEEE-SS--EECTTSCECCGHHTSCS.-SS.S-EEEETTEEEEEEEGGGGGSHHHHHHHHHTT-SEEEE.........BH.GCCCT CS
  CN_hydrolase  98 avlldldgklvgkyrKlhLfpgeprpptaverelfep.gdg.ipvfdtpvgkiGaaiCyeigfpellralalkgaeilvn.........lserapvp 183
                   a+++d++gk++g+y+K +L+        + er  + +  d+ +pv+dtp+gk+G++ C++  fpe+ r l + gae ++             ++++ 
    KKY19918.1  86 AYFIDNQGKILGSYQKKNLW--------HSERGHLTSaVDDlHPVIDTPIGKVGLLACWDLAFPEAFRELIAGGAETIIIpaywtfaeaSGAGMRYN 174
                   ********************........555555555456669*****************************************999984479**** PP

                   CHHHHHHHHHHHHHHHHHHTSEEEEEEBEEE....HCETTEEEE--EEEE-TTS-EEEECCSSSTEEEEEEEEHH CS
  CN_hydrolase 184 ksmgppqwellgraralengcfviaanqvgg....yeqlilwpvghSaiidpdGrilaglgeeeegvliaeidla 254
                    +  + +++ +  +r +en c  i  +++g+    + + +  +vg S i  p    l +lg  e g++ia+id +
    KKY19918.1 175 ARCEQLVLNSMVVSRCFENTCA-IVFVNAGNavpkRDDKKNICVGESQISVPFIGALEKLGDAE-GMIIADIDTQ 247
                   *********************9.56666666699999************************998.9*******65 PP

>> PCSK9_C2  Proprotein convertase subtilisin-like/kexin type 9 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.1e-05      0.28       6      62 ..     165     224 ..     162     225 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.1e-05
    PCSK9_C2   6 pqaragtetrarCse...edhVLTGCssHsevedlsdqvrPvlrsegqpsqCVGrkeasv 62 
                 ++  ag+  +arC++   ++ V+  C     +  + + +++v++ + +++ CVG++++sv
  KKY19918.1 165 EASGAGMRYNARCEQlvlNSMVVSRCFENTCAIVFVNAGNAVPKRDDKKNICVGESQISV 224
                 567899999****9977789************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1914.52
//
Query:       KKY19919.1  [L=801]
Description: putative rna splicing factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.7e-42  141.0   0.4    4.7e-21   74.4   0.0    3.5  3  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
      2e-21   76.8   0.0    7.9e-21   75.0   0.0    2.1  1  RBM39linker   linker between RRM2 and RRM3 domains in RBM39 p
    1.6e-17   63.4   0.2    4.7e-17   61.9   0.2    1.8  1  Cyt-b5        Cytochrome b5-like Heme/Steroid binding domain
    0.00065   19.5   0.0       0.29   11.0   0.0    2.6  2  RRM_occluded  Occluded RNA-recognition motif
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.046   13.8   0.0    1.9  1  RRM_3         RNA binding motif
      0.077   13.2   0.0         14    5.9   0.0    2.6  2  PHM7_cyt      Cytosolic domain of 10TM putative phosphate tra
       0.15   12.2   0.0          2    8.6   0.0    2.4  2  RRM_7         RNA recognition motif
        4.4    6.1   5.0         32    3.3   3.4    2.1  2  XRN_M         Xrn1 helical domain


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   2.6e-16   5.8e-13       1      66 [.     412     477 ..     412     480 .. 0.96
   2 !   74.4   0.0   2.1e-24   4.7e-21       1      70 []     511     580 ..     511     580 .. 0.99
   3 !   14.6   0.0   9.5e-06     0.021      13      69 ..     728     781 ..     726     782 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 2.6e-16
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETT CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklgg 66 
                 +fV  L+  +  +eL ++F+k+Gp+k++++v+d   g+skg+++VeF ++e+   A++ l g+kl g
  KKY19919.1 412 VFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDrVSGRSKGVGYVEFRQEESVPLAIQ-LTGQKLLG 477
                 79********************************************************.***99876 PP

  == domain 2  score: 74.4 bits;  conditional E-value: 2.1e-24
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 l+Vgn+++++tee+L  +F++fG+ + ++l +detg+s+g++fV+F ++ +A++Ale++ng  l gr+++
  KKY19919.1 511 LYVGNIHFSITEEDLQNVFEPFGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKMNGFDLAGRPIR 580
                 8******************************************************************996 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 9.5e-06
                 HHHHHHHHT.TSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  13 eeLkelFsk.fGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +++++  ++ +G +++i l ++    ++g  + +F++    e+A++ lng+ +ggr++
  KKY19919.1 728 DDVRAECEDkYGHVVHIALDPN----TQGDIYLKFDKVQGGENAIKGLNGRFFGGRQI 781
                 666666666699**99999995....9*****************************98 PP

>> RBM39linker  linker between RRM2 and RRM3 domains in RBM39 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0   3.5e-24   7.9e-21       1      91 []     650     722 ..     650     722 .. 0.84

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 3.5e-24
  RBM39linker   1 lDdddrgGvnLnatsRaaLMakLarsgtalsipaaaaaalqnsaaaaeaataveaaapaeak.lasvavpiatecllLkNMFdpaeEtepdW 91 
                  lDd+d++Gvn++++sR+aLM+kLar++++++++++++ +     +                k l  v+v++a++c+l +NMFdpaeE++++W
   KKY19919.1 650 LDDTDVAGVNFSNYSRDALMRKLARTDEPTETTKQQPVKRA--DV----------------KpL-PVSVSQASRCVLVRNMFDPAEEEGEEW 722
                  7***************************9776665555422..11................112.4899**********************9 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.2   2.1e-20   4.7e-17       3      73 ..      13      85 ..      11      86 .. 0.93

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 2.1e-20
                HHHTTTECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTT...GGCHHHHHHHHGGEEEEE CS
      Cyt-b5  3 eelskhngkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvv...hsekdaekllkkylvGkl 73
                 ++++hn+ ++++v+i  kVYDv++f+s+hpGg+++il+y GkD+ +++++ v   hse+ a ++l++ l+G++
  KKY19919.1 13 VDVASHNNAKSCYVTIGTKVYDVTDFISDHPGGGDLILEYGGKDVGDIMQDEVshaHSEA-AYEILDESLIGYM 85
                589************************************************999878777.7999999999985 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00013      0.29      12      72 ..     519     583 ..     510     587 .. 0.89
   2 !    5.6   0.0    0.0062        14      16      69 ..     728     782 ..     726     788 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
  RRM_occluded  12 tvnkariralveekegeikkivLvpdheG.....AivefkdekiagkasLaLdgsefegkklrcGt 72 
                    ++++ +++++e+  ge++ ++L+ d  G      +v+f+d ++a  a+ +++g +++g+ +r+G 
    KKY19919.1 519 SITEEDLQNVFEPF-GELEFVQLQKDETGrsrgyGFVQFRDPNQAREALEKMNGFDLAGRPIRVGL 583
                   689999********.************996666669****************************95 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0062
  RRM_occluded  16 ariralveekegeikkivLvpdheGAi.vefkdekiagkasLaLdgsefegkklr 69 
                   + +ra +e+k g++++i L p+ +G i ++f++++    a+  L+g  f g+++ 
    KKY19919.1 728 DDVRAECEDKYGHVVHIALDPNTQGDIyLKFDKVQGGENAIKGLNGRFFGGRQIT 782
                   56899999999**************884566666666677778999999999886 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.1e-05     0.046      12      60 ..     519     572 ..     512     610 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.1e-05
                 S--HHHHHHHCHCCS-ECEEEE-TTSSE.....EEEEESSHHHHHHHHHHHHHC CS
       RRM_3  12 elsredikellsklgevayvdyekgdke.....gevrFkedeeakkalekatea 60 
                  ++ ed++++++ +ge+++v ++k+++      g v+F ++++a++alek+  +
  KKY19919.1 519 SITEEDLQNVFEPFGELEFVQLQKDETGrsrgyGFVQFRDPNQAREALEKMNGF 572
                 57899******************998733333378**************98765 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.016        36       2      39 ..     410     443 ..     409     475 .. 0.89
   2 ?    5.9   0.0    0.0061        14     109     140 ..     536     567 ..     478     576 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.016
    PHM7_cyt   2 rTvlvtgiPkelrseeklkeffeelypgkvvesvqivr 39 
                 rTv+v+++   lr++e l  ffe++ p k+    qiv+
  KKY19919.1 410 RTVFVQQLAARLRTKE-LIAFFEKVGPVKE---AQIVK 443
                 9************887.999*****99766...56665 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0061
    PHM7_cyt 109 eieeerekvkkkplgaaFvtfesersaaavak 140
                 e+ ++++ ++ + +g++Fv+f++ ++a ++++
  KKY19919.1 536 EFVQLQKDETGRSRGYGFVQFRDPNQAREALE 567
                 67889999999****************99974 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       0.3   6.7e+02       4      67 ..     412     468 ..     409     477 .. 0.63
   2 ?    8.6   0.0    0.0009         2       3      59 ..     510     558 ..     509     570 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.3
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLl 67 
                 vFv  l + +  +el+a f++ g+v+      a+  k +   s   kg  ++ f +e+sv   +
  KKY19919.1 412 VFVQQLAARLRTKELIAFFEKVGPVKE-----AQIVKDRV--SGRSKGVGYVEFRQEESVPLAI 468
                 677777777777777777777776642.....23322222..3334688888899999987655 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0009
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfed 59 
                 +++vG +   itee+l++ f+ fg++   + + ++ ++ +       +gy f+ f d
  KKY19919.1 510 RLYVGNIHFSITEEDLQNVFEPFGELE--FVQLQKDETGR------SRGYGFVQFRD 558
                 579*********************975..33333322222......24666666655 PP

>> XRN_M  Xrn1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   3.4     0.015        32      68     162 ..     233     327 ..     222     344 .. 0.65
   2 ?    2.0   0.0     0.037        82     321     378 ..     397     454 ..     390     478 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.015
       XRN_M  68 lvslvgkveekifrkrkeredrkekklakeeeaskedaaneeaavaeeklseskvak..saeaeaeaeaeaeaeakaekekrekaekeleeseeeee 162
                 l s+ +++ ++i ++r +  ++k+++++++e+++++d   +++   ++++ e++ ++  + e+++++++  ++ ++  ++kr++  ++ + ++++ +
  KKY19919.1 233 LDSTAASAADDISKDRDRDDRHKSERAERRERDRHRDGSRDRDRKRKDRSRERRHERdgDREITPKSDRGSANGSH--RSKRRSRSRDSDRHHSRRD 327
                 4556677889*****************9999999999998888888777777666652234444444444333333..3333333333333333333 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.037
       XRN_M 321 kleeeLteeEkkRNtrksdvlfvsktskkaeallaklsekekdeeklkideklsegln 378
                 + e++Lte+E+ R t+  ++l  +  +k+  a+ +k+   ++++  +   +  s+g++
  KKY19919.1 397 TPEPQLTEDERDRRTVFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVG 454
                 55899********************999999999998877755544443334555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (801 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       923  (0.0514808); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.50
# Mc/sec: 4803.46
//
Query:       KKY19920.1  [L=657]
Description: putative succinate dehydrogenase flavoprotein subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-51  175.6   0.4    3.3e-28   98.7   0.1    2.1  2  DUF3818   Domain of unknown function in PX-proteins (DUF3818)
      4e-22   78.6   0.0    8.4e-22   77.5   0.0    1.5  1  PXB       PX-associated


Domain annotation for each model (and alignments):
>> DUF3818  Domain of unknown function in PX-proteins (DUF3818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.1   3.6e-32   3.3e-28       2     155 ..     141     310 ..     140     312 .. 0.95
   2 !   76.4   0.0   2.3e-25   2.1e-21     211     335 ..     310     438 ..     308     442 .. 0.91

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 3.6e-32
     DUF3818   2 LsklfeeikekesieelspelkkliewarielAstlyqvFvgsdnsselfaqlkrlhklmPYfllkqiLritNpmaimkglldLfLaqPf......... 91 
                 L++l+ + +e++++ee++p++k++ e++ ++lAs+++ +++ s +++ l++ + + +kl+PY +++q L+i+N+++++++++++ L +           
  KKY19920.1 141 LEELVVKAGETDDLEEHPPSTKAVHEFVLVNLASFMHYTLILSPKGQYLLKLMDNANKLVPYLVIRQTLKIGNVASMISAMVRVVLTKMSvtsltnwmg 239
                 678888999******************************************************************************966699999999 PP

     DUF3818  92 ......ggrsLlqrifstilnedlkelekeikelekkidk.seelieklkkfveaseeeqeeireeseeek 155
                        g +Llq i+st+ln+d+k+le+   +le++  +  + ++++lk+++ +++e+qe+ir++s+e+ 
  KKY19920.1 240 ltqskdEGMNLLQHIISTVLNWDIKDLESRAGKLERERAQlGKDQLQALKDYTTKPREDQEKIRKQSREQA 310
                 999887779***************************888889*************************9876 PP

  == domain 2  score: 76.4 bits;  conditional E-value: 2.3e-25
     DUF3818 211 lkellklylrerDkellikll...qepelsellkdiitifyeplvrvykaanisdalkdfqkFlndliklveklkneeqe..sdpanvvqafidLvdrh 304
                 + e+l+++l  rD++++i+ l   + + l+++++d+++ +  ++ r ++a ++s +++df++Fl d+ikl++ +++++++       +v +f++L+ +h
  KKY19920.1 310 ALEYLNIQLSIRDRKQIIQTLchsSPDHLTQAVRDLVAAYEPVIRRMHEAVDLSGTVSDFEQFLRDIIKLAK-VQTTNKDgkDAVVPTVGDFAQLLRKH 407
                 569****************998867789********************************************.55555555677889************ PP

     DUF3818 305 edsfykFvhevyvkdeelfdelikWiekilk 335
                 ++s  +F+h+ +++++el++ +++W +k  +
  KKY19920.1 408 QKSSHRFIHQCCKNGPELVSWYLEWAKKAAT 438
                 **************************99876 PP

>> PXB  PX-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.0   9.4e-26   8.4e-22      32     129 ..      11     100 ..       7     101 .. 0.93

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 9.4e-26
         PXB  32 pdalsklGyPFkseekekkekkeaesselPllrfllrefvltfPflkalpkefWqdkvqpfleslaeanlSesydkgeltkrkklatklskllellvr 129
                 p  l+++G+PF+ e+         + s++P l+ l+++f l++P+l++l+++fW+ +v +++e+l +anlSesydkg +++rk+lat++s+l+e+ vr
  KKY19920.1  11 PGSLKHYGPPFTAED--------GKPSSSPALQALVSKFALPLPGLRDLSEDFWKIRVHELIEDLEKANLSESYDKGVIGSRKTLATAVSALIEYPVR 100
                 6789********866........34679*****************************************************************99776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1113  (0.0620782); expected 358.6 (0.02)
Passed bias filter:                      680  (0.0379274); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 4097.41
//
Query:       KKY19921.1  [L=403]
Description: putative u3 small nucleolar ribonucleoprotein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-16   60.0   0.2    2.6e-16   60.0   0.2    2.1  2  Sas10_Utp3  Sas10/Utp3/C1D family
  ------ inclusion threshold ------
      0.071   12.8   1.9       0.13   12.0   1.9    1.4  1  DUF4636     Domain of unknown function (DUF4636)


Domain annotation for each model (and alignments):
>> Sas10_Utp3  Sas10/Utp3/C1D family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.2   2.9e-20   2.6e-16      14      87 .]      23     105 ..       7     105 .. 0.71
   2 ?   -2.6   1.5         1   9.1e+03      34      34 ..     178     178 ..     117     215 .. 0.65

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 2.9e-20
  Sas10_Utp3  14 slepllskakaeekkslsd..........eklsegisllslKnelllaYllnlllylllklsgvelkd...hp.......vvkeLvrlRvyleK 87 
                 sl++ ++           +          +++++gislls+Knelll+Yl+nl+++++lkl++++ ++   h+       v+ +Lv+l++y++K
  KKY19921.1  23 SLASSST-----------IeantifdpstDATKHGISLLSTKNELLLSYLHNLVFLIILKLRSISESTdgnHDqsqlgkdVIGKLVELKTYMDK 105
                 2222111...........022333446668999******************************44444233558889999************98 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1
  Sas10_Utp3  34 k 34 
                 +
  KKY19921.1 178 N 178
                 1 PP

>> DUF4636  Domain of unknown function (DUF4636)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.9   1.4e-05      0.13     126     190 ..     140     205 ..      50     214 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.4e-05
     DUF4636 126 qrrarrhsqlnqvnqiqkdsdtteldseesnsga.sswkesese...hhpspasikrrkiaqrqrnlgs 190
                  +  +++s++n v +    sd +   se+ +s+a ss  e+e +   ++p pa+++ +   qrq++ +s
  KKY19921.1 140 SKSKKHKSKINGVRNGAASSDVSSNASEDEDSDAeSSANEAELDelsYRPNPAALQSK---QRQQQTNS 205
                 34456889*********************9999856778887543338999**99955...44444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1492  (0.0832171); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.51
# Mc/sec: 2365.86
//
Query:       KKY19922.1  [L=556]
Description: putative proline-specific permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   7.3e-135  450.2  44.5   9.1e-135  449.9  44.5    1.0  1  AA_permease    Amino acid permease
    6.6e-31  107.6  48.9    7.9e-31  107.3  48.9    1.0  1  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
      0.014   15.9   0.2      0.036   14.6   0.2    1.6  1  Pet100         Pet100


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  449.9  44.5  1.5e-138  9.1e-135       1     475 [.      51     517 ..      51     520 .. 0.98

  Alignments for each domain:
  == domain 1  score: 449.9 bits;  conditional E-value: 1.5e-138
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngp.ksggfytyasrflgpelGfviGlnylfswitvlaleltaa 97 
                  h+++ialgg+iGtglfvg+g vl+ +Gp+ +l ay+ + + ++l+ml lge+  ++p ++ +  +++ rf++p+l+f+ G+ny++ + + +a+e+taa
   KKY19922.1  51 HLQLIALGGAIGTGLFVGSGTVLADCGPAPLLMAYICMSALVWLIMLDLGEMTAYMPiRGLSVPYLVNRFVEPSLAFASGWNYWYAYSILVAAEVTAA 148
                  99************************************************************************************************ PP

  AA_permease  98 siliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakee 194
                  s +i++w  +t+++   v+++++lvv+li+n+v+v ++geaef++a+ik+iai ++iivg+++ +gg+p +++ gfr+++d+g+     + p+ ++ +
   KKY19922.1 149 SLIIEYW--TTKIS-PAVWITIVLVVILILNIVAVAWFGEAEFWFASIKLIAITGLIIVGVVIFFGGAPDHDRlGFRYWKDPGA-----FNPYMTSGN 238
                  *******..*****.*********************************************************************.....666655669 PP

  AA_permease 195 egafknfisvfvivvfaft.GielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.....aspfvifikesgvs 286
                  +g+f++f  +++ ++fa+  + el++++agE++ P+++iPka++++v+r++ fYv+++l+ig++vp+n+  ll++++s+     aspfv+ i+++g++
   KKY19922.1 239 TGRFLAFWHAMIKAAFAYIlSPELITAAAGECEAPRRNIPKATRRFVYRLVAFYVFGALVIGVIVPYNNNRLLSAINSGsagaaASPFVVGIQNAGIP 336
                  ******************99****************************************************************************** PP

  AA_permease 287 vlaplinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwllii 384
                  vl+++inavilt+a+s++ns+ly++sRvly la+ g aPk+++k+++ gvP++a+l s+++++l++l+ s++ a  +vfn+l++is+++g+i w++++
   KKY19922.1 337 VLNHIINAVILTSAWSAGNSFLYAGSRVLYGLACTGQAPKIFGKCNRFGVPYNAVLGSFAVGCLGYLNVSSTGA--TVFNWLSNISTVSGFIAWIVVL 432
                  **************************************************************************..********************** PP

  AA_permease 385 lsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkrp 475
                  ++ylrfRka  ++g+ +++l+f+++++p+ +++v++++++++l+++++++++     + ++a+sf+ ay+++++fl++++g+k +++++ +
   KKY19922.1 433 YTYLRFRKAVILNGI-TDRLPFRSHFQPYATYFVMFIVTLLALTNGFAIFFP-----GELSASSFFTAYVTIPIFLVFYFGHKAYFRTPWA 517
                  *********999999.99**********************************.....99****************************9765 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3  48.9   1.3e-34   7.9e-31       8     423 ..      54     502 ..      47     505 .. 0.78

  Alignments for each domain:
  == domain 1  score: 107.3 bits;  conditional E-value: 1.3e-34
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsg.Giyvytkaafgkkvaflsawfnwfayvpvlasilsvaa 100
                    ++++g +ig+g fv +  ++a  gpa +l   i + ++++  +l + E+++ +p +g  +   + ++  + +af s+w +w+ay++ + +  + aa
     KKY19922.1  54 LIALGGAIGTGLFVGSgtVLADCGPAPLLMAYICMSALVWLIMLDLGEMTAYMPIRGlSVPYLVNRFVEPSLAFASGWNYWYAYSILV-AAEVTAA 148
                    6899***********9977777999877777777777777889999***6667777725666668888******************55.6667777 PP

  AA_permease_2 101 syllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl..........stetdtffpng 186
                    s ++  +  ++ +  w+t++     l+++ ++ni+++ + + + ++ + +k+ + ++ lii+g++++ +gg++++          +++ +  +++g
     KKY19922.1 149 SLIIEYWTTKISPAVWITIV-----LVVILILNIVAVAWFGEAEFWFASIKL-IAITGLIIVGVVIF-FGGAPDHdrlgfrywkdPGAFNPYMTSG 237
                    77777787787776555555.....7778899********************.89999999*****8.6666666699988876666666677778 PP

  AA_permease_2 187 wpg....vllgllivlwsfdGf.esaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddei.......anlsnlgsv......aal 262
                    ++g    ++ ++  ++++++   e ++  + e  ++++++pka+   +   + +y++ ++++  +vp ++        +   ++  +      + +
     KKY19922.1 238 NTGrflaFWHAMIKAAFAYILSpELITAAAGEceAPRRNIPKATRRFVYRLVAFYVFGALVIGVIVPYNNNrllsainS---GS--AgaaaspFVV 328
                    8884233355666677877754377777777777999*******************************99967764321...22..1223222666 PP

  AA_permease_2 263 ffeavggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgl 358
                      +++g +v+ +i++++i  s++ a+n+++++ srvl+ la  g  P+ f k n+fg p++a+  ++ v ++ +l ++ + ++ +n+l+++s+++ 
     KKY19922.1 329 GIQNAGIPVLNHIINAVILTSAWSAGNSFLYAGSRVLYGLACTGQAPKIFGKCNRFGVPYNAVLGSFAVGCLGYLNVSSTGATVFNWLSNISTVSG 424
                    67999999*****************************************************************99888767*************** PP

  AA_permease_2 359 iisyllliigalilrkkrphl.....kr........pgkilvaiigalfllfll...valffppkgpatqssliyt.iiltv 423
                    +i +++++ ++l  r+++ +       r        p  + +++++++++l++l   +a+ffp++ +a ++ ++y  i +++
     KKY19922.1 425 FIAWIVVLYTYL--RFRKAVIlngitDRlpfrshfqP--YATYFVMFIVTLLALtngFAIFFPGELSASSFFTAYVtIPIFL 502
                    *******96555..55555443333344765555332..5555555555555554449999***999999998888644444 PP

>> Pet100  Pet100
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2   6.1e-06     0.036      11      38 ..     492     520 ..     491     546 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.1e-06
      Pet100  11 fglYvffPvgvfyyfnqpeyfee.fvvkt 38 
                 f  Yv++P+++ +yf++  yf+  + +++
  KKY19922.1 492 FTAYVTIPIFLVFYFGHKAYFRTpWAKPI 520
                 789*******************9888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       853  (0.0475766); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.54
# Mc/sec: 3096.40
//
Query:       KKY19923.1  [L=899]
Description: putative delta-1-pyrroline-5-carboxylate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.6e-104  348.8   0.0   5.3e-104  348.3   0.0    1.2  1  Aldedh    Aldehyde dehydrogenase family
    4.6e-63  213.5   0.0      7e-63  212.9   0.0    1.3  1  Pro_dh    Proline dehydrogenase


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  348.3   0.0  5.9e-108  5.3e-104       9     462 .]     412     882 ..     403     882 .. 0.91

  Alignments for each domain:
  == domain 1  score: 348.3 bits;  conditional E-value: 5.9e-108
                 EEEEETT.TCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH.HTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHHHHH CS
      Aldedh   9 ievinPa.tgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlle.erkeelaeletletGkplaeara.eveeaidvlryyaela 104
                  + +nP+ + e +a +++a++edvda+++aA ea++aw++lp+e+Ra i+ +aa+l+  + + e++++ +l +Gk++++a+    +e++d++r y+ ++
  KKY19923.1 412 TRQHNPSrHAESVAVYASASPEDVDACIDAALEAKPAWEALPFEDRATIFLRAAELISgKYRAEIVAATMLGQGKNIWQAEIdAAAETCDFFRHYIHEC 510
                 67899*999999*********************************************9889*********************7777************* PP

                 HHHSEEEEEE.CTTEEEEEEEEE-.SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHH CS
      Aldedh 105 eklegevlps.segklalvrrePl.GvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealv 201
                  +l  e  ++  +g+ + + ++Pl G+v aI+P+Nf +l  a  +apa + GN+v++KP++ +++ +++l +++ eaglPk+v+++v+g+ +e+ ++++
  KKY19923.1 511 WRLFAEQPKVhPSGTWNKMEYRPLeGFVYAIAPFNFTAL-GATLIAPAALLGNVVIWKPSPSAVHASWILYKILLEAGLPKNVIQFVPGDAEEITNTVL 608
                 **888776665589**********************865.66779999999************************************************ PP

                 H-TTESEEEEES-HHHHHHHHHHHHCT........TSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHH CS
      Aldedh 202 ehpevdkvsftGstevgrkiakaaakn........lkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklvea 292
                 + pe+  v+ +Gst+v + ++ + +k         + r++ E+GGkn ++v+++aD+ +a+  +++gaf ++GQ+C+a+sr++v  s++ ef+  lve+
  KKY19923.1 609 RRPEFSGVTYIGSTAVFKGLLGKIGKAtaegtfrsYPRIVGETGGKNFHLVHSSADVRSAALHTMRGAFEYQGQKCSACSRAYVSASVWPEFRRHLVEQ 707
                 ****************996555544322333344479************************************************************** PP

                 HHT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHT.TSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESS..HHHHHH CS
      Aldedh 293 akklkvgdpldedtdvGPliseaqlekvekyveeakee.gaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkd..eeeaie 388
                 + k+k+g+p+d ++ + ++i+e++++k+++++ +ak++ + +l+ Gg   +a++e+gyfv+Ptv   ++p+++i+ +E+FGP+l+v+ ++d   +++++
  KKY19923.1 708 LDKVKIGKPEDYSNFMNAVIHERSFDKLNDVILSAKDDsELELIAGG---KASKEEGYFVHPTVYVTTNPKHEIMSKELFGPILPVYVYDDaeWDHLLK 803
                 ********************************999975268999999...899*************************************733568887 PP

                 HHHS.SSEESEEEEE-SBHHHHHHHHHHS..-SSEEEESSSST--TTT.SEB--CGGGEES-BSH.HHHHHHTEEEEEE CS
      Aldedh 389 iaNd.teyGLaagvftkdleraervaerl..eaGnvyiNdsttgaaea.lpfgGvkqSglGregg.kegleeytevktv 462
                    + + y+L++++f++d    +++  +l  +aG++y+N+++tg++ a +pfgG ++Sg+++++g  + l ++t v+t+
  KKY19923.1 804 TIDStSTYALTGSIFARDQYASKHAQTALkhSAGMLYLNTKCTGSTVAqQPFGGSRDSGTNDKTGtMAHLLRFTSVRTI 882
                 7766168***********98888888777669**************999************888867889999999875 PP

>> Pro_dh  Proline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.9   0.0   7.8e-67     7e-63       2     295 ..      29     356 ..      28     357 .. 0.84

  Alignments for each domain:
  == domain 1  score: 212.9 bits;  conditional E-value: 7.8e-67
                 HHHHHHHHHTTE.EEEEEES-S.....S--SHHHHHHHHHHHHHHHHHHHHHHCCS-T....TCC-SEEE-GGG....TT-SGGGHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxx.xxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh   2 kktieklkkrgv.rlsldllge.....avlteedadryleayleaiksiekaskalkv....leapgvsvklsa....prletaeeeevmeelverlrt 86 
                 +kti+++k+ g+  ++l++++e     + ++e+  ++  +++   i+++++++ +  +     e +++++k+++       + a+     +e+++ +++
  KKY19923.1  29 EKTITDIKRMGYsGVILSYSKEivantTSVQEAISQKVQSTTMSHIQQWRESNLQ--TlkmmGEGDYLALKFTGagstVTKALADGADPPQEFLDSIDA 125
                 7999999955996699999999555444444444455555556666666555542..2334566666*******985324455555556********** PP

                 HHHHHHHTT-EEEE----GGGHH....HHHHHHHHHHHSCCTTT---EEEEEETTBTTHHHHHHHHHHHHHHTTS-EEEEEE--S-HHHHHHHHHHTT- CS
                 xxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh  87 lakeakelgvrlliDaEeaklqe....ltlelfrklnkepelkdwevvgntyQaYlkdalevlqkllelAeregfrlgvkLVrGAYldsErkraqelgy 181
                 ++++a++++  +++DaE++ +q+    +++ ++r++n++ e+     v nt+QaYlk++ e+l+ +l+lA++eg+ lg+kLVrGAY+ s+++       
  KKY19923.1 126 ICQQAASQNSLVWVDAEQQVFQPtidtWAIGMMRRYNRNGEI----LVLNTIQAYLKSSRENLSAQLRLAQAEGWGLGIKLVRGAYIGSDPR------- 213
                 **************************************9999....7*********************************************....... PP

                 S-SB-SSHHHHHHHHHHHHHHHH.........HTTTTEEEEEE-S-HHHHHHHHHHHHHT...T--GGGEEEEEETTSSHHHHHHH.....HHTTS-.. CS
                 xxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxx.. RF
      Pro_dh 182 espifdtkeeTDanYdavaelll.........enrdeiypavAsHNaesvakalalaeel.gqekeksevefqqLlGMadnlsfal.....akagyn.. 263
                  ++i+dtk++TD +++++++ ll         e   ++++ +AsHNa+sv+ a +l ++l + +k k+ ++f++L+GMad++ ++l     +    +  
  KKY19923.1 214 -NLIHDTKADTDDCFNSIVRNLLsksfpgfheEDFPDVRLFIASHNADSVRMASELENDLtSSGKLKQPISFGMLQGMADDVGCELleendC----Akq 307
                 .8*********************999998755445588889*******************9999999*******************865541....234 PP

                 .................EEEEEEECEHHHHHHHHHHHHHHHH-TT-HHH CS
                 .................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh 264 .................vrkYlPvGpveevlpYLvRRleENtanssftr 295
                                  v+kYl +G+v+e+++YLvRR+ EN+ ++++++
  KKY19923.1 308 sslhplgneaiqmkahkVYKYLAWGTVQECMQYLVRRAVENQGATDKLK 356
                 56677888888888888*************************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (899 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.54
# Mc/sec: 5029.75
//
Query:       KKY19924.1  [L=607]
Description: putative fungal specific transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-09   35.3   0.0    2.8e-08   33.1   0.0    2.0  2  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1     0.019   3.4e+02      68     104 ..      99     135 ..      78     177 .. 0.54
   2 !   33.1   0.0   1.6e-12   2.8e-08       8     190 ..     136     314 ..     127     346 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.019
  Fungal_trans  68 efiafplraeilihedfsspssslwilq.sLlllelye 104
                   +  a+ lr++ ++ ed  +  s+l +l  +L l++++ 
    KKY19924.1  99 DGTAYRLRWKRIS-EDEDPDISNLPALDyALYLFNVVK 135
                   5555666665555.555555555665554444444433 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 1.6e-12
  Fungal_trans   8 fh.pqf.pilhkpsflpkt...ssenssksayasplll..lailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsL 97 
                   fh +qf +i++++s+l +    + ++ +k++++   ++  l++la G  f++ ++   +ssl  +      +  ra++l+ +   ++ + l +++ L
    KKY19924.1 136 FHlGQFsNIVDEESYLQNLdefYVDTATKARSSRLWFAqyLLVLAFGKAFVGHASVGPSSSLPGVE-----YASRAMALLPDMSAVEGDGLFAIEVL 227
                   8888889999999999999887777788888888888899****************9988888854.....5679*99*98888888888******* PP

  Fungal_trans  98 lllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddd 190
                    l++ly +  + r ++  h+g a+r ++  g hr+ +         +  + +++   +ww++++lD+ +   +G p++++d+qi+  +P   d
    KKY19924.1 228 CLASLYFQSIDMRIAAFQHIGQALRYCYVEGIHRHLPEGT------VGSKLSQRCNTVWWTVYILDREFTALMGGPSTIPDEQITAVYPSQRD 314
                   **********99************************9988......88888**************************99******99998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 3752.01
//
Query:       KKY19925.1  [L=639]
Description: putative nonsense-mediated mrna decay protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-42  144.2   0.0    3.9e-42  144.2   0.0    3.4  3  Smg4_UPF3      Smg-4/UPF3 family
    1.5e-05   24.8   1.8    0.00022   21.0   0.0    3.4  4  RRM_1          RNA recognition motif. (a.k.a. RRM, RBD, or RN


Domain annotation for each model (and alignments):
>> Smg4_UPF3  Smg-4/UPF3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.2   0.0   4.3e-46   3.9e-42       3     174 .]      53     220 ..      51     220 .. 0.92
   2 ?  -16.7  25.1         2   1.8e+04     133     173 ..     223     263 ..     218     356 .. 0.80
   3 ?   -3.4   0.1      0.92   8.3e+03     137     154 ..     415     444 ..     402     457 .. 0.39

  Alignments for each domain:
  == domain 1  score: 144.2 bits;  conditional E-value: 4.3e-46
   Smg4_UPF3   3 ktKvviRrLPPnLteeefleavsd..kplpetvdykyFvpGklskdslkeskysrayinfkdpedlvqfakkfdghvFvDskgnes......paivefA 93 
                 + K+++RrLPP Lt++ef +a+++  ++++++++++++  Gk+s+d++k+s++sray+++k++  +  +a+k+++  F+D k+++       p+++efA
  KKY19925.1  53 RLKLILRRLPPGLTQDEFTTALGAewNAGAGKIEWMAYKDGKISRDPSKPSRPSRAYVKVKEQALISILADKVKTTSFQDGKDSTNdpcligPPSLEFA 151
                 68*********************889999*****************************************************888899*********** PP

   Smg4_UPF3  94 pyqkvpkkkkkkkdakqgtIekDpeylaFleslekeeeekeseseeeklaeeaeekekekeakkekktttpLleylkekka 174
                 py +vp  + ++kd +qgtI++Dpe++aFl+sl ++ ++++++   e++++         +a++ek+tttpL+ey+kekka
  KKY19925.1 152 PYGRVPGGR-ARKDGRQGTIDQDPEFIAFLHSLTEPITKSTANG--ESADS---------KAEAEKVTTTPLVEYIKEKKA 220
                 *******88.************************8888744444..44443.........45679**************96 PP

  == domain 2  score: -16.7 bits;  conditional E-value: 2
   Smg4_UPF3 133 keseseeeklaeeaeekekekeakkekktttpLleylkekk 173
                 +++++e+++++++++ekeke +++k+ kt+t  +  +k++k
  KKY19925.1 223 AKEKAEKAAEKSAKKEKEKEGKESKASKTETKKVSVMKKEK 263
                 22222233333333344444466777777776666666655 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 0.92
   Smg4_UPF3 137 seeeklaeeaeekekek.................e 154
                 +++++     +++++++                  
  KKY19925.1 415 TAAQQ-----QPSTRQSnkpnpvpssgarsaflkH 444
                 11111.....1221111122334444544555544 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.37   3.3e+03       2      15 ..      57      70 ..      56      75 .. 0.82
   2 ?    0.4   0.1     0.064   5.7e+02      44      59 ..     212     227 ..     208     234 .. 0.88
   3 ?   -3.1   0.0      0.79   7.1e+03      50      63 ..     304     317 ..     302     320 .. 0.81
   4 !   21.0   0.0   2.4e-08   0.00022       8      58 ..     449     494 ..     446     501 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.37
                EEESETTTSSHHHH CS
       RRM_1  2 fVgnLppdvteeeL 15
                +++ Lpp +t++e 
  KKY19925.1 57 ILRRLPPGLTQDEF 70
                6789*******986 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.064
                 EEESSHHHHHHHHHHH CS
       RRM_1  44 VeFeskedAekAleal 59 
                 Ve+ ++  A+kA+e+ 
  KKY19925.1 212 VEYIKEKKANKAKEKA 227
                 9************975 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.79
                 HHHHHHHHHHTTEE CS
       RRM_1  50 edAekAlealngkk 63 
                  +A++A++ ln ++
  KKY19925.1 304 GEATAAKDVLNTTQ 317
                 6899****999876 PP

  == domain 4  score: 21.0 bits;  conditional E-value: 2.4e-08
                 TTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHH CS
       RRM_1   8 pdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlea 58 
                 + vte  L   FskfG++ ++++ +      kgf++ +Fe  e  ++A++a
  KKY19925.1 449 QGVTEPLLLSEFSKFGRVLKCEIDK-----RKGFGYLDFEEAEGLKAAMAA 494
                 579999************9999988.....6*****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3013  (0.168052); expected 358.6 (0.02)
Passed bias filter:                      784  (0.043728); expected 358.6 (0.02)
Passed Vit filter:                       239  (0.0133304); expected 17.9 (0.001)
Passed Fwd filter:                        79  (0.00440627); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.81u 0.45s 00:00:02.26 Elapsed: 00:00:00.64
# Mc/sec: 3002.20
//
Query:       KKY19926.1  [L=396]
Description: putative tor signaling pathway phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-34  118.0   0.0    2.1e-29  103.5   0.0    2.1  2  Metallophos      Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
      0.084   12.5   0.0       0.14   11.8   0.0    1.2  1  Glyco_hydro_65N  Glycosyl hydrolase family 65, N-terminal dom
       0.22   10.4   0.0       0.33    9.9   0.0    1.2  1  Pox_I6           Poxvirus I6-like family


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.5e-05      0.15       2      28 ..      62      83 ..      61     103 .. 0.84
   2 !  103.5   0.0   3.5e-33   2.1e-29      35     201 ..     164     326 ..     144     329 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.5e-05
                 EEEEEESBTBTTCCTHHHHHHHHHHHH CS
  Metallophos  2 rilvigDlHlalgggqlddllkllddl 28
                 +++++gD+H     gq++dll+l++ +
   KKY19926.1 62 PVTICGDIH-----GQFYDLLELFRVA 83
                 699******.....**********765 PP

  == domain 2  score: 103.5 bits;  conditional E-value: 3.5e-33
                  SEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHHHHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE CS
  Metallophos  35 dlvllaGDlvdrgdlekellel.laalvkypipvylllGNHe........gfeeellnkygylgifsepwrsdaevfnnlplaslgsgslkvlllhGg 123
                   ++  +GD+vdrg ++ e+l l l+ + kyp+++ l++GNHe        gf+ee+ +kyg+      +w+ +++vf+++ l ++++g  kvl++hGg
   KKY19926.1 164 FVF--LGDYVDRGYFSLETLTLlLCLKAKYPDKITLVRGNHEsrqitqvyGFYEECVQKYGN----TSVWKACCQVFDFMTLGAIVDG--KVLCVHGG 253
                  444..5*******555555555599999999******************************9....889*******************..******** PP

                  .CEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHHHHHHHHHTTESEEEEESS CS
  Metallophos 124 .spellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsplyrgsgylfgdealedllkkygvdlvisGHt 201
                   spe+  +ld+++ + + +e+p++g   d+ ++d        +  v ++   +rg+g+lfgd+++ +++  +g+ l+ ++H+
   KKY19926.1 254 lSPEI-RTLDQIRVVARAQEIPHEGafcDLVWSD--------PEDVETWAVSPRGAGWLFGDKVATEFCHVNGLSLIARAHQ 326
                  98888.****************************........***************************************7 PP

>> Glyco_hydro_65N  Glycosyl hydrolase family 65, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.3e-05      0.14      26      84 ..     198     251 ..     197     265 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.3e-05
                      E----TTTT--.-EEETT-EE-T........TSSS-EE----EEEEEEEEETTEE--GG CS
  Glyco_hydro_65N  26 tRgafeeeysdpgtyiaGvYdreiseeanGypeeneelvnlpdwlglrlrvdgeeldld 84 
                      +Rg++e     + t + G+Y++    +++G + +++ ++++ d+++l   vdg+ l + 
       KKY19926.1 198 VRGNHES--R-QITQVYGFYEEC--VQKYGNTSVWKACCQVFDFMTLGAIVDGKVLCVH 251
                      6999999..4.59*******988..57**************************888775 PP

>> Pox_I6  Poxvirus I6-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   5.5e-05      0.33     206     257 ..      27      78 ..      23      81 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 5.5e-05
      Pox_I6 206 dekskkkfpenkvtsiceivkefeklkfeeaksssapalttfvpkklvslid 257
                   k++k ++e++++++ce+vkef  ++ + + +s++  +   +  ++  l++
  KKY19926.1  27 AAKNCKYLSEAHMKQLCEMVKEFMMEESNIQPVSTPVTICGDIHGQFYDLLE 78 
                 4689**********************99999999988887777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.52
# Mc/sec: 2312.41
//
Query:       KKY19927.1  [L=554]
Description: putative threonine synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-24   84.8   0.0    8.6e-24   83.6   0.0    1.7  1  Thr_synth_N  Threonine synthase N terminus
    6.8e-18   65.1   0.0    3.7e-17   62.7   0.0    1.8  1  PALP         Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> Thr_synth_N  Threonine synthase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0   9.6e-28   8.6e-24       1      79 []       7      89 ..       7      89 .. 0.92

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 9.6e-28
  Thr_synth_N  1 kYiSTRgea....eklsfeeallkGlAeDgGLyvPeeiPklsaeeleelrklsYaelafevlklfi.edeipeedLkeliekaY 79
                 kY STR ++    e +sfe+++lkGlAeDgGL+ P++iP++ ++ l+++++l +++laf++++l+i e+ei++++Lk++i+k+Y
   KKY19927.1  7 KYSSTRYHDtskqEFFSFEDVVLKGLAEDGGLFHPDSIPSVATK-LTSWQDLAFPDLAFNIMRLYIdESEISNSELKSIIDKTY 89
                 699**986433337789************************997.**************************************9 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   4.1e-21   3.7e-17       8     275 ..      98     464 ..      92     478 .. 0.83

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 4.1e-21
                 --EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHH...........HHTT..TTTSEEEEEBSSHHHHHHHHHHHHH.T-EEEEEEETTS-H. CS
        PALP   8 TPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllar...........lkeg..tgaktvveassGNhgralAaaaall.Glkvtivvpadasp. 91 
                 TP+v l++ +     +l l   ++ pt +fKd ++++l              l++g      tv+ a+sG++g a+++  +    +   i +p+++ + 
  KKY19927.1  98 TPVVSLDKSK-----DLHLLELFHGPTFAFKDVALQFLGNLfefflvrknksLAPGqkPHHLTVIGATSGDTGSAAIYGLRGKkDVSIFIMFPDGKVSp 191
                 7888887743.....4667666777***********54444555854335554444877899*******************7768999999**999844 PP

                 .HHHHHHHHTT-EEEEE..CCHHHHHHHHHHHHHHHSTTCEE--TTT..SHHHHHH.HHTHHHHHH.........HHTTTTEEEEEEE-SSSHHHHHHH CS
        PALP  92 .ekvallrllGaevvev..ggdydeavaaaaelaaegegaylvsqfd..nptvieg.ygtiglEil.........eqlggkpdavvvpvGgGgliaGia 175
                  + ++++  l  +v+    +g++d++++++++l a+ +++  +++    n+ +++   ++i + ++         +q+g++p  +vvp G+ g i +  
  KKY19927.1 192 vQEAQMTTVLDPNVHNLavEGTFDDCQDTVKALFAD-PEMNKTHHLAavNSINWARiLAQITYYFYayfsllrqdAQIGPNPVKFVVPSGNFGDILAGF 289
                 588888999999**99999*****************.555555555555555555555555555544478889999999******************** PP

                 HHHHHHSTT-EEEEEEECTTCGGTTCCS..S.SS..B.............................................................. CS
        PALP 176 aglkerrpdvrvigvepegsdalarslragrrvtvpvs............................................................. 213
                 ++ + + p  +++++ ++++d l+r++++g +++ pv+                                                             
  KKY19927.1 290 FAKRMGLPIEKLVIA-TNENDILHRFWQTGTYSKHPVPaseaegglpqdgvkahsdgvketlspamdilvssnferllwylqydhevsndqsadpaalv 387
                 ********8888877.556******************************************************************************** PP

                 .......SSS.CCSTCS...CGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHH.....HHHSB-B-HHHHHHHHHH.H CS
        PALP 214 .......dtiadglavg...spselafelldrlvdeivtvsdeealeamrlla.....rregivvepssaaalaal.k 275
                        +t+ + l++    s+ +++++ ++r  +    vsd ++le++r  +     ++  +v++p++a+++aa+ +
  KKY19927.1 388 hragsqvNTWFQELKTTgsfSVHPDVLANARRDFT-THRVSDTQTLETIRSTYkgeiiEKKNYVLDPHTAIGVAAAiR 464
                 *******9999999999655555555555555555.788***********99988888999**************943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 3471.66
//
Query:       KKY19928.1  [L=486]
Description: putative atp citrate lyase subunit putatibe [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-87  292.0   0.1    1.7e-87  291.5   0.1    1.2  1  Citrate_bind  ATP citrate lyase citrate-binding
    1.5e-07   31.2   0.0    2.1e-07   30.7   0.0    1.2  1  ATP-grasp_2   ATP-grasp domain
  ------ inclusion threshold ------
      0.028   12.5   0.1      0.043   11.9   0.1    1.1  1  Reovirus_M2   Reovirus major virion structural protein Mu-1/M


Domain annotation for each model (and alignments):
>> Citrate_bind  ATP citrate lyase citrate-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.5   0.1   2.9e-91   1.7e-87       1     177 [.     297     474 ..     297     475 .. 0.99

  Alignments for each domain:
  == domain 1  score: 291.5 bits;  conditional E-value: 2.9e-91
  Citrate_bind   1 relskeeayiaeldaktgaslKltvlnpkgriwtlvaGGGasvvyaDtiadlglaselanYgeysGapseeqtyeyaktildlmtre.krpdgkvli 96 
                   relskee+yi+++daktgaslKltvln++griwtlvaGGGasvvyaD+ia++g+ selanYgeysGap+e+qty+ya+tildlm+r+   pdgkvl+
    KKY19928.1 297 RELSKEEKYISDMDAKTGASLKLTVLNANGRIWTLVAGGGASVVYADAIASAGFVSELANYGEYSGAPTETQTYNYARTILDLMLRApMYPDGKVLF 393
                   7899**********************************************************************************9899******* PP

  Citrate_bind  97 iGggianftnvaatfkgiiraleelksklkehkvkiyvrrggpnyqeglkamkelgeelglpikvfgpethitaivklalg 177
                   iGggianftnva+tfkg+iral+e++  l+ehk++i+vrr+gpnyqeglk++k++geelgl+++v+gpe+h+++iv+lal+
    KKY19928.1 394 IGGGIANFTNVASTFKGVIRALKEVAPVLNEHKTQIWVRRAGPNYQEGLKNIKAVGEELGLNMHVYGPEMHVSGIVPLALN 474
                   *******************************************************************************96 PP

>> ATP-grasp_2  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   3.6e-11   2.1e-07      41     202 .]      73     228 ..      52     228 .. 0.78

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 3.6e-11
                  SEEEEE--SSSTCCCTTCEEEESSHHHHHHHHHCCTTSEEE-TTS-TT-EEE--EEEEE---..ECEEEEEEEEEETTTTEEEEEEESSTTS-HHHHH CS
  ATP-grasp_2  41 elvvKaQvlaGGRGKagGvklvkskeeakeaakellgkelvtkqtgkeGkkvekvlveeald..ikkElYlsivlDraskkvvviaSseGGvdiEeva 136
                  ++v K   l+  RGK+g + l k+  ea++ +++  gke +    ++      + lve  ++   + E+Y+ i   r+  +  +++ +eGGvd+ +v 
   KKY19928.1  73 KFVAKPDQLIKRRGKSGLLALNKTWPEARAWIEARAGKEQK---VETVTGVLRQFLVEPFVPhpQNTEYYININSVRD--GDWILFTHEGGVDVGDVD 165
                  5577777788889***999999*******999999999988...3334456788999986651167899998766665..5678899*********** PP

                  HH-GGGEEEEEEBTTTB--HHHHHHHHHHCT--CHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE CS
  ATP-grasp_2 137 akkPekiikvaidpakglkeeqareiakklglekelvkkaakiikklyklfveldatlvEiNPLvv 202
                  ak  + +i v + +    +e+ a  ++   ++++ + + ++++i++ly ++v+++ t +EiNPLvv
   KKY19928.1 166 AKAEKLLIPVDLKQYPS-NEKIAAALL--SKVPRGVHNVLVDFISRLYAVYVDCQFTYLEINPLVV 228
                  99988777666554433.344444444..45788999***************************96 PP

>> Reovirus_M2  Reovirus major virion structural protein Mu-1/Mu-1C (M2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   7.1e-06     0.043      32     120 ..     314     411 ..     306     428 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.1e-06
                  XXXXXHHHHX--BEEEEESS...S---SGGGE...-----..---B-EE-.-HHHHHHHHHHHHHHHTTHHHHHHTT---S---HHHH-EEEEEEEES CS
  Reovirus_M2  32 aldlkPGvlnPtGklWraiG...tsvasadsl...alvsd..nkeeyvvv.tenaretltkavldlelwrelldalkvgsgsvvlsdlltivdgyvGa 120
                    +lk  vln  G++W  +    +sv  ad++    +vs+  n +ey+   te    ++++++ldl l  +++   kv+     +++++ +++++ G+
   KKY19928.1 314 GASLKLTVLNANGRIWTLVAgggASVVYADAIasaGFVSElaNYGEYSGApTETQTYNYARTILDLMLRAPMYPDGKVLFIGGGIANFTNVASTFKGV 411
                  5688999*********98843569999999995553565433889998643899999************************************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 3093.11
//
Query:       KKY19929.1  [L=691]
Description: putative atp-citrate synthase subunit 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.4e-21   74.3   0.0    1.5e-17   63.7   0.0    2.8  2  Citrate_synt  Citrate synthase, C-terminal domain
    8.4e-19   68.1   0.0    2.4e-18   66.6   0.0    1.8  2  CoA_binding   CoA binding domain
    7.3e-15   55.1   0.1    1.3e-14   54.3   0.1    1.3  1  Ligase_CoA    CoA-ligase
    3.1e-06   27.0   0.1    6.5e-05   22.8   0.0    2.2  2  Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain


Domain annotation for each model (and alignments):
>> Citrate_synt  Citrate synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00034       1.5      12      53 ..     397     440 ..     388     443 .. 0.81
   2 !   63.7   0.0   3.3e-21   1.5e-17     168     354 ..     442     636 ..     436     642 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00034
                   SEEEETTTTE.EEETTEEHHHHHHHHS-HHHHHHHHHH.SS--- CS
  Citrate_synt  12 isevdgekge.lrYRGydieeLaeekssfeevaylLlt.gelPt 53 
                   is++  ++g+ l+Y G++i +  +e   +  v+ lL++  +lPt
    KKY19929.1 397 ISTISDDRGQeLLYAGMPISDVFREDIGIGGVMSLLWFrRRLPT 440
                   55555556777************999***********9455887 PP

  == domain 2  score: 63.7 bits;  conditional E-value: 3.3e-21
                   HHHHHHHHHHHHS--SSSHHHHHHHHHHT.TT--HHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHSSGG.GHHHHHHHHHHTTTS--TTBC-SSS.. CS
  Citrate_synt 168 eaklldlalvlhaDHelnaSTfaarvvaS.tladlysaiaagigalkGplhgganeavlkmleeigsaeveveeylekvlakekerlpGfGHrvy.. 261
                   + k+l+++l+l aDH+ ++S ++  +++  ++ dl+s+++ag+ +  G + gga + + + ++++ ++ +  +e+++++ ++ ++ +pG+GHrv   
    KKY19929.1 442 ASKFLEMVLMLTADHGPAVSGAMNTIITTrAGKDLISSLVAGLLTI-GSRFGGALDGAAEEFTKAYDKGLSPREFVDTMRKE-NKLIPGIGHRVKsr 536
                   6799*************99988776665449**************9.777777777776666666577669********886.5**********944 PP

                   SS--HHHHHHHHHHHHHHTCHTHHHHHHHHHHHHHHHHHHHHCHHGCT-EB-THHHHHHHHHHT....T.-.-GGG........HHHHHHHHHHHHH CS
  Citrate_synt 262 kksDpRakilkelaeelaeekgkdpllklaeeleevapevlkekeeknlypNvDfysgvlyral....g.i.peel........ftvlfaisRvaGw 344
                   ++ D R++++ke++ + +    +++ll+ a ++e v+ +    k+  nl  NvD   +v +  l    g + pee+           lf+++R++G 
    KKY19929.1 537 QNPDLRVELVKEYVLKNF---ASHKLLDYAIAVETVTTS----KK-DNLILNVDGCVAVCFVDLmrncGaFsPEEAedylkmgvLNGLFVLGRSIGL 625
                   57888*********7755...5899**************....34.89******999887654422224323444355556666889********** PP

                   HHHHHHHH.HT CS
  Citrate_synt 345 lAhileql.ad 354
                   +Ah l+q+  +
    KKY19929.1 626 IAHFLDQKrLR 636
                   ******87444 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   5.3e-22   2.4e-18       2      96 .]      51     156 ..      50     156 .. 0.98
   2 ?   -2.8   0.1       2.3     1e+04      70      89 ..     157     176 ..     157     179 .. 0.61

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 5.3e-22
                  TTEEEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TTTTTCEET.........TEEEESCHHHHHHHC.TTTEEEEES-HHHHHHHHHHHHH.TT-S CS
  CoA_binding   2 kdtkviviGagglgiaglyhfkeklkygikavfgvnprkvgtevl.........glpvyksvdeleekt.evdvavitvPaesaqeavdelve.agik 88 
                  ++t+++v+G++ ++ +g+++f++ +k+++++v+g+ ++++g+ v+          lpvy++vd++ +k+ +vd+ v +++++s++++++el+e  +i+
   KKY19929.1  51 NKTRCFVYGMQPRAVQGMLDFDFICKRSTPSVAGIIYTFGGQFVSkmywgtretLLPVYQDVDKAFAKHsDVDTVVNFASSRSVYSSTMELLEyPQIR 148
                  79*******************************************************************88*************************** PP

                  EEEEESST CS
  CoA_binding  89 giviiteg 96 
                   i+ii+eg
   KKY19929.1 149 AIAIIAEG 156
                  ******97 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.3
                  S-HHHHHHHHHHHHHTT-SE CS
  CoA_binding  70 vPaesaqeavdelveagikg 89 
                  vP+++a+e+ +++ ++g+  
   KKY19929.1 157 VPERRAREILVAAKAKGVTI 176
                  67777777666666666554 PP

>> Ligase_CoA  CoA-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.1   2.9e-18   1.3e-14       1     150 [.     216     338 ..     216     340 .. 0.91

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 2.9e-18
                 EESSHHHHHHHHHHHHHT..............T--BSEEEE-TSS--..........HHHHHHHHHHHHS-TT-SEEEEEEEESSSEHHHHHHHHHHHH CS
  Ligase_CoA   1 lvnGGtLayeamdlikealgdvasnkklknvlgseqheiidlGddaftkGrpHPmiDptkriealkklaadpevkvilldivlGygahedpaaellkai 99 
                 ++++G++++e++++++++              + + +e +++G+d+++         +t++i++l +++adpe k++ll +++G g +e+ + e +k  
  KKY19929.1 216 VSKSGGMSNELNNIVSQT--------------TDGVYEGVAIGGDRYP---------GTSFIDHLLRYQADPECKILLLLGEVG-GVEEYRVIEAVKGG 290
                 579***************..............9**************9.........***************************.****9876666655 PP

                 HHTT...--S-EEEEEECTTHH........HHHHHHHTTTSSEEE-SSHHHHHH CS
  Ligase_CoA 100 keakaegrelpvvarvaGtead..pqels.eqakaleeagveiasskaqalraa 150
                 + +      +p+va+ +Gt+a   + e++ ++a+a +++++e+a  k++a + a
  KKY19929.1 291 QIT------KPIVAWAIGTCASmfKTEVQfGHAGASANSQLETAVMKNKAMKEA 338
                 555......5************88677778*******************99877 PP

>> Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.04   1.8e+02      49      75 ..     141     169 ..     122     178 .. 0.79
   2 !   22.8   0.0   1.4e-08   6.5e-05       1     136 [.     210     354 ..     210     356 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.04
  Succ_CoA_lig  49 laedpetkvillylEsird..grkflsaa 75 
                   l e p++++i++  E++ +  +r+ l aa
    KKY19929.1 141 LLEYPQIRAIAIIAEGVPErrAREILVAA 169
                   66889************983344454444 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 1.4e-08
  Succ_CoA_lig   1 pGkialisqSGalalalldwaasrglgfskvvslGn..eadvdvadlleylaedpetkvillylEsird.grkflsaarraarkkpvvvlksGr..s 92 
                   +G+++ +s+SG++  +l + +++   g+ + v +G      +++ d l  +++dpe+k++ll  E  +    + ++a++  + +kp+v++  G+  s
    KKY19929.1 210 KGSVGYVSKSGGMSNELNNIVSQTTDGVYEGVAIGGdrYPGTSFIDHLLRYQADPECKILLLLGEVGGVeEYRVIEAVKGGQITKPIVAWAIGTcaS 306
                   599*******************************9833457899999999999*********99966653789********************9887 PP

  Succ_CoA_lig  93 eagaraaashtgalagsd....avvdaafrqaGvlrvdsleelfdaae 136
                     +++    h ga a+s+     + ++a+++aG+ + d++ee+ ++++
    KKY19929.1 307 MFKTEVQFGHAGASANSQletaVMKNKAMKEAGFHVPDTFEEMPATLA 354
                   778888899999998875333245678***************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.50
# Mc/sec: 4194.09
//
Query:       KKY19930.1  [L=369]
Description: putative cell wall biogenesis protein glutathione transferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-20   73.7   0.0    2.9e-20   72.3   0.0    1.8  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    1.6e-13   50.5   0.0    2.8e-13   49.7   0.0    1.4  1  GST_C_2   Glutathione S-transferase, C-terminal domain
    9.2e-06   26.0   0.0    0.00054   20.3   0.0    2.4  1  GST_N_3   Glutathione S-transferase, N-terminal domain
     0.0064   16.7   0.0      0.017   15.3   0.0    1.7  2  GST_C     Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0   6.6e-24   2.9e-20       1      68 [.      73     173 ..      73     174 .. 0.89

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 6.6e-24
                 S-HHHHHHHHHHHHCT--EEEEEE.H...-TTSHHHHH...............................HHHCTTTSSSEEE-CTTE..EEESHHHHHH CS
     GST_N_2   1 aCPwahRvlialalkglediisvv.vlepkgfekseef...............................prlnprgtVPvLwdkdgq..vineSseIlr 65 
                 aCPwahR+li+++lkgl+d i    v++ +  ek++ f                               p++ +r+tVPvL d++++  v+neSseI+r
  KKY19930.1  73 ACPWAHRTLITRNLKGLQDYIGITsVHW-EMLEKGWRFakkdeipgdnagpdpihpnfthlqdiyyesePNYEGRFTVPVLYDTKTKriVNNESSEIIR 170
                 7*****************9988854666.456677777888888999999999******************************877789********** PP

                 HHH CS
     GST_N_2  66 yle 68 
                 +l+
  KKY19930.1 171 MLY 173
                 *97 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   6.2e-17   2.8e-13       2      68 ..     225     305 ..     224     305 .. 0.92

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 6.2e-17
                 HHHCHHHHHCCHCHHHCTTT--......-SS...CTTCS--HHHHHHHHHHHHHHHHHHS-......---TT-HHHHHHHH CS
     GST_C_2   2 aaveraleqldaaldaleahLa......dsp..flfGdqptlaDialapflvrlraagpgf......direaypnlraWle 68 
                 +a+er + +l+++ld +e+hL+      +sp  +++G ++t  Di+l+++++r++ ++ ++      dir++yp +++W++
  KKY19930.1 225 EAYERNVVTLFKSLDRVESHLRtqfsspKSPgpYYLGPHLTELDIRLFTTIIRFDPVYVQHfkcnlkDIRSGYPAIHRWMK 305
                 7899999***************88877733367************************99999*****************96 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.2e-07   0.00054       1      69 [.      68     174 ..      68     182 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.2e-07
                 EES-TTSHHHHHHHHHHHHHT--.......EEEE---..............................TTTTHHHHHHH-TT--SSEEETTS-...EEES CS
     GST_N_3   1 LygfpaSpyarrvrlaLnekglp.......vevvevt..............................pgehdeellaknplgkvPvLeddge...altd 59 
                 Ly ++a+p+a r  ++ n+kgl+       v+++  +                              ++   e+ +++ ++ +vPvL+d+ +   +  +
  KKY19930.1  68 LYVSYACPWAHRTLITRNLKGLQdyigitsVHWE--MlekgwrfakkdeipgdnagpdpihpnfthlQDIYYESEPNYEGRFTVPVLYDTKTkriVNNE 164
                 9*********************855554333333..2559999999999999999999999977775555677777888********99955566777* PP

                 HHHHHHHHHH CS
     GST_N_3  60 SlaIidyLee 69 
                 S++Ii+ L +
  KKY19930.1 165 SSEIIRMLYH 174
                 *****99976 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.8e-06     0.017      16      87 ..     219     305 ..     188     308 .. 0.88
   2 ?   -3.5   0.0       2.9   1.3e+04      74      87 ..     314     328 ..     311     329 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.8e-06
                 THHHHHHHHHHHHHHHHHHHHHHHHHHH........TSSSSSTTSSCHHHH.HHHHHHH....HHHHHTTTTT..TTTSHHHHHHHH CS
       GST_C  16 aeekkeelvdealekvaevlsaleeelk........kqdylvGdkltlADi.alvpiln....wlqrlglafg..qekfpnlkawle 87 
                  +++++e+++ +   ++++l+++e +l+           y+ G +lt  Di ++++i++    ++q+++ +++  + ++p++++w++
  KKY19930.1 219 GFATSQEAYERNVVTLFKSLDRVESHLRtqfsspksPGPYYLGPHLTELDIrLFTTIIRfdpvYVQHFKCNLKdiRSGYPAIHRWMK 305
                 45789999********************99999988788************55556666999999******99************98 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.9
                 TT.TTTSHHHHHHHH CS
       GST_C  74 fg.qekfpnlkawle 87 
                 f+ +++f ++k++++
  KKY19930.1 314 FKeTTQFEHIKKHYT 328
                 555688999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2456.47
//
Query:       KKY19931.1  [L=834]
Description: putative meiotic recombination protein mre11 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-52  178.9   3.1      1e-52  178.9   3.1    2.2  2  Mre11_DNA_bind  Mre11 DNA-binding presumed domain
      1e-14   55.5   2.4    1.9e-14   54.7   2.4    1.5  1  Metallophos     Calcineurin-like phosphoesterase
    1.7e-06   28.4   0.2    9.6e-06   25.9   0.2    2.2  1  Metallophos_2   Calcineurin-like phosphoesterase superfamily 
  ------ inclusion threshold ------
        8.1    6.6  10.8      0.079   13.1   0.9    2.6  3  Voldacs         Regulator of volume decrease after cellular s


Domain annotation for each model (and alignments):
>> Mre11_DNA_bind  Mre11 DNA-binding presumed domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.9   3.1   2.2e-56     1e-52       1     169 []     290     472 ..     290     472 .. 0.97
   2 ?   -0.6   0.2      0.32   1.5e+03      29      57 ..     477     511 ..     473     523 .. 0.65

  Alignments for each domain:
  == domain 1  score: 178.9 bits;  conditional E-value: 2.2e-56
                     EEEEEEE-SSS--EEEEEEECCC-TTT-...CCTS-CCCHHHHHHHHHHHHHHHHHHHH........SSSTTS------EEEEEEE-T....TT- CS
  Mre11_DNA_bind   1 FklepipLktvRpfvlkeisLsdvaelk...kkeknkekvtkflrekVeelieeaeeew........eeeaeeeepplPLiRLrVdys....ggf 80 
                     F+ e+++LktvRpfv+kei+L+d+++++   +k++n+++vt++l ++Ve+lie+a+eew        e+e+e++epplPLiRLrV+ s    g f
      KKY19931.1 290 FTSENVRLKTVRPFVMKEIALQDDPAMRkisRKNQNRAEVTNYLVKVVEQLIEQAKEEWletrepgdEDEDESSEPPLPLIRLRVEISapegGTF 384
                     78899********************99999999*********************************999**********************99** PP

                     ----HHHHHHCCCTTBS-SSSSEEEE-S-XXXXXXXXXXXXXXX......XXXXXXXXXCHHHHHHHHHHS.XXTTSXHHHHHHHHHHH CS
  Mre11_DNA_bind  81 evenpqrfgqrFvgkVANpndvlqfyrkkkarkkkkkekaaakeeeellaeaekldklkvedlVkeyleaqekLkllpekglneAveeF 169
                     +venpqrf+++F+++VAN+ndv+qfyr+kk+ +  kk ka++ ++ee +++ e ld +++e+lV+e+l+aq +L++lp++++++Av +F
      KKY19931.1 385 DVENPQRFSNKFATRVANTNDVVQFYRSKKNLNILKKVKADDLASEEAMSHLEGLDIVRIEKLVREFLAAQ-TLTILPQNTFSDAVGQF 472
                     ********************************99998888888889999999*******************.**************999 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.32
                     CCTS-CCCHHHHHHHHHHHHHHHHHHHH......S CS
  Mre11_DNA_bind  29 kkeknkekvtkflrekVeelieeaeeew......e 57 
                     +k+++++ v++ l+++V+ l++  +++       +
      KKY19931.1 477 DKHAMEAFVNDSLSNQVKHLMALNKSKAgdddddD 511
                     45555666888888899998888777776554431 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   2.4   4.1e-18   1.9e-14       1     204 []      10     245 ..      10     245 .. 0.63

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 4.1e-18
                  EEEEEEESBTB.......TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS..............................HHHHHHHHHHHHHH CS
  Metallophos   1 lrilvigDlHl.......algggqlddllkllddllreekpdlvllaGDlvdrg..............................dlekellellaalv 61 
                  +r+lv +D H+        +g+ +++++ ++++ ++++ ++d+vllaGDl++++                              d             
   KKY19931.1  10 IRVLVASDNHVgynerdpIRGDDSWRSFHEVMRIAKER-DVDMVLLAGDLFHENkpsrksmfqvmrslrmnclgdkpcelqflsD------------- 93 
                  59******************************777666.***************7666666666666666666544444443331............. PP

                  HH....................TSEEEEEC-TTSCHHHHHHHHHHHHHHH....HHHHEHHHCEEETSEEEEEETTEEEEEEEESECEEE........ CS
  Metallophos  62 ky....................pipvylllGNHegfeeellnkygylgif....sepwrsdaevfnnlplaslgsgslkvlllhGgspel........ 127
                                         ipv+ ++GNH+    + +      +++    s++++++    +  p a+ +    k ll+  g   l        
   KKY19931.1  94 -AsenfpgafdhvnyedldinvAIPVFSIHGNHD----DPSGEGHLAALDllqvSGLINYY----GRTPEADNIHV--KPLLMQKGRTKLalygmsnv 180
                  .04445556666666677777889**********....44444333333322334444444....66666665555..55555555333342222222 PP

                  ....THHHHHHHHHHHSCHHHHCCHHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHHHHHHHHHTTESEEEEESSSSE CS
  Metallophos 128 ....lvsldklgslnleleapepgdewlkdlekrekadwvivlgHsplyrgsgylfgdealedllkkygvdlvisGHtHvy 204
                      l  +   g++n++l+++++ d+w++            +  H +++    ++  +   e +l ++  dlv++GH+H++
   KKY19931.1 181 rderLFRTFRDGKVNFYLPSTQK-DDWFNL-----------LAVHQNHH---AHTETSYLPEHFLPEF-MDLVVWGHEHEC 245
                  34566666677777777777666.788877...........33333333...2223333333444444.8*********85 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.2   2.1e-09   9.6e-06       2     149 ..      11     268 ..      10     288 .. 0.65

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 2.1e-09
  Metallophos_2   2 klaiiSDlH............snldaleavlealkevgvdaiihaGDl.eeeep.......................................evl 45 
                    ++++ SD H            ++ +   +v++++ke +vd++++aGDl  e +p                                       +  
     KKY19931.1  11 RVLVASDNHvgynerdpirgdDSWRSFHEVMRIAKERDVDMVLLAGDLfHENKPsrksmfqvmrslrmnclgdkpcelqflsdasenfpgafdH-- 104
                    799****************999999999*******************66555556666666677777777777777777777666666666441.. PP

  Metallophos_2  46 eellela.....pvlaVrGNnD.............................eev.veedvlreaaelgtdl......peeaelelagek....... 93 
                     + ++l      pv  ++GN+D                             +++ v+  ++++  +    +       e+ + ++++ k       
     KKY19931.1 105 VNYEDLDinvaiPVFSIHGNHDdpsgeghlaaldllqvsglinyygrtpeaDNIhVKPLLMQKGRTKLALYgmsnvrDERLFRTFRDGKvnfylps 200
                    222222244578*******************99999999999999999877444333444444333333336666642333333333332222222 PP

  Metallophos_2  94 ........vlliHgdplgvkdalaellkeaeegsd..vvvcGHtHvpeveke....ggvlvvnPGsvgep 149
                            +l +H+ + +++ + ++l +    +++  +vv GH H+ e++ +    ++ +v  PGs    
     KKY19931.1 201 tqkddwfnLLAVHQNH-HAHTETSYLPEH-FLPEFmdLVVWGHEHECEIDPRlnpdTSFRVMQPGSSVAT 268
                    2233344566666652.444444444444.5566677**********88887555457788899986554 PP

>> Voldacs  Regulator of volume decrease after cellular swelling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.37   1.7e+03      65      87 ..     351     373 ..     319     404 .. 0.74
   2 ?   13.1   0.9   1.8e-05     0.079      81     130 ..     454     520 ..     444     527 .. 0.76
   3 ?   -4.2   0.7       3.9   1.7e+04     117     126 ..     660     666 ..     651     678 .. 0.40

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.37
     Voldacs  65 gededdneededeeessveltlv 87 
                   + +d++ede++e+  + ++l+
  KKY19931.1 351 TREPGDEDEDESSEPPLPLIRLR 373
                 34556667777777777777776 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.8e-05
     Voldacs  81 sveltlvPkna.................eetildnifealsacqelhpdpdeeddeedeeneeneee 130
                 + +lt+ P+n+                 e  ++d++ +++ + ++l+++++ +dd++d e+ee+e++
  KKY19931.1 454 AQTLTILPQNTfsdavgqfidkddkhamEAFVNDSLSNQVKHLMALNKSKAGDDDDDDLEDEEEEDD 520
                 5679999999988877777666555444356799*****************7777777666666665 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 3.9
     Voldacs 117 ddeedeenee 126
                 +dee     +
  KKY19931.1 660 EDEES---YP 666
                 11111...11 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (834 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1371  (0.0764683); expected 358.6 (0.02)
Passed bias filter:                      679  (0.0378716); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.41
# Mc/sec: 6162.32
//
Query:       KKY19932.1  [L=1284]
Description: putative poly + rna transport protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.5e-108  360.6   0.0    3.1e-71  239.6   0.0    2.2  2  ThiF             ThiF family
    9.5e-93  310.7   0.1    1.9e-92  309.8   0.1    1.5  1  UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
    9.9e-32  109.5   0.1    2.4e-31  108.3   0.1    1.7  1  E1_UFD           Ubiquitin fold domain
    5.9e-29  100.1   0.1    1.6e-28   98.7   0.1    1.8  1  E1_FCCH          Ubiquitin-activating enzyme E1 FCCH domain
    3.9e-25   87.8   0.9    8.9e-25   86.7   0.9    1.7  1  E1_4HB           Ubiquitin-activating enzyme E1 four-helix bu
      1e-09   38.7   0.0    3.2e-09   37.1   0.0    1.9  2  HAD_2            Haloacid dehalogenase-like hydrolase
     0.0002   21.7   0.0     0.0007   19.9   0.0    2.0  1  Hydrolase        haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.11   13.0   0.0        1.2    9.6   0.0    2.8  3  NAD_binding_7    Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.7   0.0   1.2e-37   2.6e-34       1     233 [.     280     661 ..     280     668 .. 0.89
   2 !  239.6   0.0   1.4e-74   3.1e-71       1     240 [.     674    1173 ..     674    1177 .. 0.98

  Alignments for each domain:
  == domain 1  score: 118.7 bits;  conditional E-value: 1.2e-37
                 THHHHHHHHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-CCG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   1 ysrqlallgedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteritd 99 
                 ysrql++lg++ ++++++s +l+vG+ glG e++kn al+Gv++ tl D   +++ +l+ q+   e+d+Gkp+a+v a +++e+np++ ve ++ +   
  KKY19932.1 280 YSRQLYVLGHEAMQRMSKSNILIVGLKGLGVEIAKNVALAGVKSMTLYDPTPVSIADLSSQYFLHESDVGKPRADVTAPRVAELNPYTPVEVHKLPSLV 378
                 89**************************************************************************************99999988755 PP

                 CCS-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEE.........ECCS-ECTSS-............T........GGS. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxx............x........xxxx RF
        ThiF 100 etvleellesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvvii.........pgktgcyeCld............p........sste 169
                 +    + l+ +++Vv++  ++ +++++ ++c+ +gi +i a+t g+ g+++  +                                          s +
  KKY19932.1 379 DG--LDSLKAFQVVVLTGTTLNDQLAISEYCHDNGIYVIIADTFGLFGYLFNDFgknftvgdaT---------GenpvngivagidNeglvsaldESRH 466
                 54..489******************************************999962333333330.........13333333333330333344446777 PP

                 EECCCCEEHHH........................................................................................ CS
                 xxxxxxxxxxx........................................................................................ RF
        ThiF 170 dptekkvplct........................................................................................ 180
                   ++  + ++t                                                                                        
  KKY19932.1 467 GLEDGDFVTFTevkgmeglnnaapkkvtvkgpytfsigdvsglgdyqggglfqqvkmpkfidfqplseqlkkpelmvsdyakfdrpqqlhvgvqalhrf 565
                 7788888888899999999999999999*********************************************************************** PP

                 ...............................................HHHCTE-B-HHHHHHHHHHHHHHHHHHHTTBCGGGCCEEEECCTTTTEEEEE CS
                 ...............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 181 ...............................................siagnipaiatttavvaglaalellkllsgkeklenslltqvdllesrfenv 232
                                                                ++ g    +++++a+++glaa+e+lk++sgk +   ++l ++d les  ++v
  KKY19932.1 566 adahknilprphnaadakevveyakeiikadglelevdeklitelsyQATG---DLSPINAFFGGLAAQEVLKSVSGKFHPVLQWL-YFDSLESLPTSV 660
                 ***************************************999999998888...9************************9999999.899888877666 PP

                 C CS
                 x RF
        ThiF 233 e 233
                 +
  KKY19932.1 661 Q 661
                 5 PP

  == domain 2  score: 239.6 bits;  conditional E-value: 1.4e-74
                  THHHHHHHHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTT.....EEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTS..EE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xx RF
        ThiF    1 ysrqlallgedgqekLrdskvllvGaGglGsellknLalsGvg.....kltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdv..ev 90  
                  y+ q+a++g+++qek+ ++k +lvGaG++G+e+lkn a++G+      ++ ++D+D+ie+sNlnRqflfr +d+G++K+e+a +a++ +np++  ++
  KKY19932.1  674 YDGQIAVFGREFQEKIGNVKNFLVGAGAIGCEMLKNYAMIGLAtgakgSIAVADMDTIEKSNLNRQFLFRAKDVGRAKSETAVAAVELMNPQLksKI 770 
                  789***************************************999999*********************************************999* PP

                  EEEES-CCGCC...S-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEECCS-ECTSS-TGGS.EECCCCEEHHH.... CS
                  xxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.... RF
        ThiF   91 eavteritdet...vleellesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvviipgktgcyeCldpsstedptekkvplct.... 180 
                  + +++r+++et   ++e++++++DlV +alDn+ear +v+r+cv+  +pl+e+gtlg++g+++vi+p+ t+ y      s++dp+e ++p+ct    
  KKY19932.1  771 TCMKDRVGPETeglYNENFWQGHDLVTNALDNVEARTYVDRRCVFFMKPLLESGTLGTKGNTQVILPKLTESYS-----SSQDPPEVSFPMCTlksf 862 
                  *********776999**************************************************976666655.....558*************** PP

                  ................................................................................................. CS
                  ................................................................................................. RF
        ThiF  181 ................................................................................................. 180 
                                                                                                                   
  KKY19932.1  863 pnkiehtiawarelfqqyyvgppetcnqylsqpdyinttlkaqgnekitldtlheflvaekpltfedcvvwarqqferqynnaiqqllynfpkdskt 959 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
        ThiF  181 ................................................................................................. 180 
                                                                                                                   
  KKY19932.1  960 ssgqpfwsgpkraptplkfdpedpthmgfviaaanlhafnygvkspstskgyyrkilddmiipefspdanvkikandadpdpeegpaaraegedlqk 1056
                  ************************************************************************************************* PP

                  ........................................................HHHCT.E-B-HHHHHHHHHHHHHHHHHHHTTBCGGGCCEEE CS
                  ........................................................xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  181 ........................................................siagn.ipaiatttavvaglaalellkllsgkeklensllt 220 
                                                                          +iag+ ipaiattt++v+gl++lel k+++gk+++e++++ 
  KKY19932.1 1057 vvdslpkpkdlsgfrltpvefekdddtnhhidfitaasnlralnydipvadrhqtkFIAGKiIPAIATTTSMVTGLVILELFKIIDGKDDIEQYKNG 1153
                  ************************************************************************************************* PP

                  ECCTTTTEEEEECCEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxx RF
        ThiF  221 qvdllesrfenvelerakks 240 
                  +v+l++++f + e+ +++k 
  KKY19932.1 1154 FVNLALPFFGFSEPISSPKG 1173
                  **************998865 PP

>> UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.8   0.1   8.3e-96   1.9e-92       1     252 []     863    1112 ..     863    1112 .. 0.95

  Alignments for each domain:
  == domain 1  score: 309.8 bits;  conditional E-value: 8.3e-96
  UBA_e1_thiolCys    1 PneieHtieWArdkFeglFekkpeevnkflkdkekfleelekekeeekletlekvlkllvkerpktfedCvkwArekfeklFnnkikqLlyn 92  
                       Pn+ieHti+WAr+ F+++++ +pe++n++l++  ++++++ k++++ek  tl++++++lv+e+p tfedCv wAr++fe+++nn+i+qLlyn
       KKY19932.1  863 PNKIEHTIAWARELFQQYYVGPPETCNQYLSQ-PDYINTTLKAQGNEK-ITLDTLHEFLVAEKPLTFEDCVVWARQQFERQYNNAIQQLLYN 952 
                       9*****************************65.699999999999999.58***************************************** PP

  UBA_e1_thiolCys   93 fPkdsktsdGapFWsgpKraPkplefdlenelhleFvvaaanLraqvygikg.erdeeaiakllskvkvpefkpkekvkiavsdeeakeeee 183 
                       fPkdskts+G+pFWsgpKraP+pl+fd+e+++h+ Fv+aaanL+a++yg+k  ++++ +++k+l+++ +pef+p+++vki+++d++ + ee 
       KKY19932.1  953 FPKDSKTSSGQPFWSGPKRAPTPLKFDPEDPTHMGFVIAAANLHAFNYGVKSpSTSKGYYRKILDDMIIPEFSPDANVKIKANDADPDPEEG 1044
                       ***************************************************9668999***********************99999976655 PP

  UBA_e1_thiolCys  184 ..eeedeeeleelaeeleklakkessla.lklkpieFeKDddtnfhidfitaasNlRArnYkIkeadrlkvK 252 
                         ++++ e+l+++ ++l+k    +++l+ ++l+p+eFeKDddtn+hidfitaasNlRA nY+I+ adr+++K
       KKY19932.1 1045 paARAEGEDLQKVVDSLPK----PKDLSgFRLTPVEFEKDDDTNHHIDFITAASNLRALNYDIPVADRHQTK 1112
                       543667899**********....8888889*****************************************9 PP

>> E1_UFD  Ubiquitin fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   0.1   1.1e-34   2.4e-31       1      93 []    1188    1278 ..    1188    1278 .. 0.99

  Alignments for each domain:
  == domain 1  score: 108.3 bits;  conditional E-value: 1.1e-34
      E1_UFD    1 WDrlevegeitlkelldyfkekkklevsmislgvsllYasflpkkkdkerlklklselveevtkkkipphqkyldlevsvedeegedvevPlv 93  
                  WDr+eve +i l+++ld f+ +k+l+v+mis+gvsllYasf+p++k k+rl+lkls+lve+v+kk+ip+hqk++++e+++ed+++edvevP+v
  KKY19932.1 1188 WDRFEVE-DIPLQQFLDEFE-EKGLSVTMISSGVSLLYASFYPPSKVKDRLPLKLSQLVETVSKKPIPSHQKNVIFEITAEDTTEEDVEVPYV 1278
                  *******.************.99***********************************************************999*******8 PP

>> E1_FCCH  Ubiquitin-activating enzyme E1 FCCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.1     7e-32   1.6e-28       1      71 []     453     523 ..     453     523 .. 0.99

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 7e-32
                 .TTSEEEESTT--S---TT-EEEEES-BT-CCGGGS--EE-EE-SSSEEE----TTS-SEEES-EEEEE-- CS
     E1_FCCH   1 dnpgvVtvleesrhgledgDyVtFseveGmtelNgkeprkikvlgpytFeIgdtsnfspYkrgGivtqvKq 71 
                 dn+g+V+ l+esrhgledgD+VtF+ev+Gm++lN+  p k++v+gpytF+Igd+s +++Y++gG+++qvK+
  KKY19932.1 453 DNEGLVSALDESRHGLEDGDFVTFTEVKGMEGLNNAAPKKVTVKGPYTFSIGDVSGLGDYQGGGLFQQVKM 523
                 699*******************************************************************8 PP

>> E1_4HB  Ubiquitin-activating enzyme E1 four-helix bundle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.9     4e-28   8.9e-25       1      69 [.     524     592 ..     524     593 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 4e-28
                 -EEE----HHHHTTS-.-BE-S-GGGTTCHHHHHHHHHHHHHHHHCT.T----TT-HHHHHHHHHHHHHH CS
      E1_4HB   1 PktlsFksleesleePeeflisDfakfdrpeqlHlafqALhaFeeeh.grlPrplneedaekvvalakel 69 
                 Pk ++F++l+e+l++P e+++sD+akfdrp+qlH+++qALh+F++ h + lPrp+n++da++vv++ake+
  KKY19932.1 524 PKFIDFQPLSEQLKKP-ELMVSDYAKFDRPQQLHVGVQALHRFADAHkNILPRPHNAADAKEVVEYAKEI 592
                 9***************.******************************777******************97 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   1.4e-12   3.2e-09       5     172 ..       1     197 [.       1     203 [. 0.78
   2 ?   -3.8   0.0       5.1   1.1e+04     111     135 ..    1127    1151 ..    1124    1159 .. 0.82

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 1.4e-12
       HAD_2   5 lDgTlldteeliiqafnelleeyglsels...eeelrkliglslrellrklgeseeeeekieellrkyneekkkkevkpydgvkelLeeLkea...... 94 
                 +Dg+l+d+e+l+ +++n +l ey  ++l+   + +l+   g+   +++ + ++   + + + + ++k++e + + ++++++gv +lL +Lk+       
  KKY19932.1   1 MDGLLIDSEDLYTHCTNAILHEYSRPSLPwsiKAQLQGRPGPAAGKIFHEWAQLPITRDEFMTKVSKIQEVEFR-KCSLLPGVSKLLTDLKSTegrgkd 98 
                 7**********************766555112455666666666667777666655555666677888888888.***************975222222 PP

       HAD_2  95 ..gyklgivTsksreaveekleqlgie.syF...dvivtsedvekk...KPdpeviekalekl............klkkeeviyvGDsptDieaakkag 172
                   +++++++Ts+++++ e k e+l+ + ++F   +v+ + +d   k   KP p++++ al+              ++k+ee+++++Ds  ++ea+++a 
  KKY19932.1  99 ggEVHIAVATSSHKRNYEIKTERLKDTfDLFpesQVVKGDDDRIPKgrgKPLPDIYLLALKLVneeiarrgtgepEIKPEECLVFEDSVPGVEAGRRAE 197
                 22599*****************998444566442344455554433666************99**********************************97 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5.1
       HAD_2  111 ekleqlgiesyFdvivtsedvekkK 135 
                  ++++ l i ++F+ i +++d+e+ K
  KKY19932.1 1127 SMVTGLVILELFKIIDGKDDIEQYK 1151
                  56677889999*********99998 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.1e-07    0.0007     116     209 ..      75     196 ..      54     197 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.1e-07
                 THHBHTTHHHHHHHHHHT.TE.E......EEEEESSEHHHHHHHHHHTT..GGGE..SEEEEHHCES....STTTSHHHHHHHHHHHT........... CS
                 xxxxxxxxxxxxxxxxxx.xx.x......xxxxxxxxxxxxxxxxxxxx..xxxx..xxxxxxxxxx....xxxxxxxxxxxxxxxxx........... RF
   Hydrolase 116 plkvkpeaaeavasLkaa.gi.e......vvlltgdnpetaeraanqlG..ddyf..daviasdiet....vakpspegkvaaireLq........... 187
                 ++++ p++ +++  Lk+  g  +      ++++t+++++++e   ++l   +d f  + v+ +d++      +kp+p++++ a++  +           
  KKY19932.1  75 KCSLLPGVSKLLTDLKSTeGRgKdggevhIAVATSSHKRNYEIKTERLKdtFDLFpeSQVVKGDDDRipkgRGKPLPDIYLLALKLVNeeiarrgtgep 173
                 45688999999999995544433566677999999999999865666666855555333444444446666****************999999999999 PP

                 .STGGGEEEEESSHHHHHHHHHT CS
                 .xxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 188 .gkpeevamVGDgvnDaaalaaA 209
                  +kpee+++++D+v +++a+++A
  KKY19932.1 174 eIKPEECLVFEDSVPGVEAGRRA 196
                 999*****************998 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00054       1.2       4      94 ..     294     419 ..     291     427 .. 0.69
   2 ?   -1.9   0.0       2.1   4.7e+03      31      82 ..     757     813 ..     741     814 .. 0.56
   3 ?   -2.2   0.0       2.6   5.8e+03      48      78 ..    1070    1103 ..    1027    1112 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00054
  NAD_binding_7   4 dlkgkkvlvvGgGevAarkvrklleag.akvtvvapevkeele..elvklaeeel...ekd.............................legadl 64 
                    ++++ ++l+vG   ++ + +++++ ag + +t+++p+  ++++  +++ l+e+++   ++d                             l+ +++
     KKY19932.1 294 RMSKSNILIVGLKGLGVEIAKNVALAGvKSMTLYDPTPVSIADlsSQYFLHESDVgkpRADvtaprvaelnpytpvevhklpslvdgldsLKAFQV 389
                    6788999***************999996679***99964433344445566666432222245555555555555555555666555454555667 PP

  NAD_binding_7  65 viaatddrelneriaeaakarrilvnvadk 94 
                    v+ + +  + + +i e++++++i v +ad+
     KKY19932.1 390 VVLTGTTLNDQLAISEYCHDNGIYVIIADT 419
                    7777666666777***************96 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.1
  NAD_binding_7  31 akvtvvapevkeeleelvklaeee.......l..ekdlegadlviaatddrelneriaeaa 82 
                    a v ++ p++    ++++++ ++        l  e+  +g dlv  a d+ e ++ + + +
     KKY19932.1 757 AAVELMNPQL----KSKITCMKDRvgpetegLynENFWQGHDLVTNALDNVEARTYVDRRC 813
                    3355566653....33344333331111111333455888999999999988887776655 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.6
  NAD_binding_7   48 vklaeeelekd...legadlviaatddrelneri 78  
                     ++l++ e+ekd      +d++ aa + r+ln  i
     KKY19932.1 1070 FRLTPVEFEKDddtNHHIDFITAASNLRALNYDI 1103
                     4466666765534455688999999999999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.50
# Mc/sec: 7797.88
//
Query:       KKY19933.1  [L=731]
Description: putative dynamin gtpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-33  115.5   0.0    3.3e-32  111.9   0.0    2.3  1  Dynamin_N  Dynamin family
    5.5e-30  104.6   0.1    1.6e-26   93.2   0.0    2.2  2  Dynamin_M  Dynamin central region
    3.8e-05   23.7   0.2      0.013   15.6   0.1    3.1  2  MMR_HSR1   50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.0   5.5e-36   3.3e-32       1     167 [.      37     254 ..      37     255 .. 0.72

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 5.5e-36
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEE..............................CCT---CCS...SSEEEET-EB--CHHHH CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelql..............................geeeeaseravkeelkekekkledfsevr 69 
                 ++vvG+qSsGKSSvl+ L+g + +pr++ ++Tr  ++++                               +                            
  KKY19933.1  37 LVVVGDQSSGKSSVLEGLTGVP-FPRDSRLCTRFATQISFrrdpvqrtnvtiipgsnaseehkttvkaftQ---------------------------- 106
                 69********************.7****************4444444444444433333322222222221............................ PP

                 HHHHHHHHHHHTSSSS--SS.........................................-EEEEEEETTS-SEEEEE---B-SSSGTTS........ CS
   Dynamin_N  70 eeieketekiagankgiskk.........................................villkilsllvkgltlvDlPGldsvnkrdq........ 119
                  +  +  + +a     i+++                                         v+ l+i+++++++lt++D+PG+ ++ ++ +        
  KKY19933.1 107 -NDVRLHDVAA-FAHLINQVrivmgiprndsgeasgsespfrseteseteigaqhtsfsddVLRLEICGPHEEHLTVIDVPGIFRTMTEGEttmadrdm 203
                 .2222222222.1111111133333344444444445555555566666666666666666************************88877779****** PP

                 ..HHHHHHH.STTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N 120 ..elvkeyi.kkadiilavtsanhdlsnsealflarevdpkgkrtivvltk 167
                   ++v+ y+ +++++ilav++a++d++++e l++a  +dp+g rt++vltk
  KKY19933.1 204 vrNMVNGYMaNPKSLILAVVPASVDIATQEILDIAGRYDPQGIRTLGVLTK 254
                 **************************************************9 PP

>> Dynamin_M  Dynamin central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   0.0   2.7e-30   1.6e-26       2     174 ..     267     448 ..     266     469 .. 0.81
   2 !    9.4   0.0   9.1e-05      0.55     170     279 ..     489     597 ..     476     604 .. 0.83

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 2.7e-30
   Dynamin_M   2 vdilenkvipLklGYvgVvnRsqkdInkkksieealkkEkaFFeshpayrkl.adkaGtpyLakkLnqiLvehIrkslPelkkkineklqklekeleel 99 
                 +d+le++  +L lG+ +V+n +q++ n+  + ++++  EkaFF++   +++l +dk+ +  L   L++iL +hIr+++P+ k++in++lq+ +kel++l
  KKY19933.1 267 FDVLEGRRHKLTLGWHIVRNPGQRELNDPDPTQDRHTIEKAFFRDTAPWNSLnKDKVSIGKLRINLQKILASHIRREYPKVKAEINKRLQDRRKELQAL 365
                 69***********************************************9999********************************************** PP

   Dynamin_M 100 geskpsde.ektklllqlitkfkedfkklieGe...se.vs.tkelsggari...reiFnetlekslekidpleelsdeeirta 174
                 g+ +++ + +++++ll++  +f++ +  +++ +   s+  + + +l++ + +   +e F+  +e+   ++ +++  + +ei ++
  KKY19933.1 366 GTTRET-PgQQRSYLLEMSMEFQRLVDLAVSAKyggSDvFEeHPDLRLATAVvsrNESFAALVEAGGHSFYFDKSDTVKEIGKY 448
                 *97766.55**************9888888766554333233555555554322255566666666666666666666666654 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 9.1e-05
   Dynamin_M 170 eirtairnsrGrelplfvpekaFealvkkqikkleepalkcvelVyeelekiveklek..elkrFpnLreeikevvedllreqeeptkemienliemel 266
                 + +++ + srG el  f   +++ + ++kq +++e+ a  +++ + + ++ ++++l +  +     ++r+++ +++++ l  + +++ ++++ ++++e+
  KKY19933.1 489 WLKKVFETSRGFELGTF-DASVLAVTMRKQSANWEPLANGYITDIATLIQHFIKELLHivC--AKEQVRDSLLSILHERLLDRYRKAFDHVRFVLNVER 584
                 56788899999999776.8899********************8888888888888666343..3479*******************************9 PP

   Dynamin_M 267 ayintnhpdfiga 279
                   +    ++f+++
  KKY19933.1 585 DGVPLTVNNFFKE 597
                 8776655555544 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   2.1e-06     0.013       2      99 ..      37     236 ..      36     254 .. 0.69
   2 ?   -2.3   0.0      0.75   4.5e+03      47      58 ..     526     545 ..     508     610 .. 0.44

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.1e-06
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE..................................................... CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke..................................................... 47 
                  ++vG   +GKS+++  ltg +    d   +Tr  +++ ++ +  +                                                     
  KKY19933.1  37 LVVVGDQSSGKSSVLEGLTG-VPFPRDSRLCTRFATQISFRRDPVQrtnvtiipgsnaseehkttvkaftqndvrlhdvaafahlinqvrivmgiprnd 134
                 689****************9.344566777777777777773322244555666666666777777777777888888888888888888888888888 PP

                 ............................................EEEEECGGCS......S..HHHHHH..HHHHHHHHHHCTSEEEEEEETTTTCSHH CS
    MMR_HSR1  48 ............................................ielvDtpGli......e..gaseek..glgkaflaleeadlillvvdaseeklkp 92 
                                                             ++++D+pG++      e  +a+++   ++ + + a+ + +lil vv as +    
  KKY19933.1 135 sgeasgsespfrseteseteigaqhtsfsddvlrleicgpheehLTVIDVPGIFrtmtegEttMADRDMvrNMVNGYMANPK-SLILAVVPASVD---I 229
                 8999999999999999999999999999999999999999999999999999754444331333333333456666666555.788888876622...2 PP

                 HHHHHHH CS
    MMR_HSR1  93 ldeelee 99 
                   +e+ +
  KKY19933.1 230 ATQEILD 236
                 3344444 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.75
                 EEEEEECGGCS........S CS
    MMR_HSR1  47 eielvDtpGli........e 58 
                 + +++D++ li        +
  KKY19933.1 526 NGYITDIATLIqhfikellH 545
                 45667777764222221111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.49
# Mc/sec: 4531.21
//
Query:       KKY19934.1  [L=682]
Description: putative dynamin gtpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-17   64.6   0.0    1.9e-15   57.3   0.0    2.5  2  Dynamin_N  Dynamin family
    2.6e-16   59.7   0.0      3e-13   49.6   0.0    3.3  2  Dynamin_M  Dynamin central region


Domain annotation for each model (and alignments):
>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   2.1e-19   1.9e-15       1     118 [.      34     171 ..      34     184 .. 0.79
   2 !    5.4   0.0    0.0019        17     146     167 ..     181     202 ..     172     203 .. 0.88

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 2.1e-19
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEE................CCT---C.........CS...SSEEEET-EB--CHHHHHHHHH CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelql................geeeeas.........eravkeelkekekkledfsevreeiek 74 
                 ++vvG+qSsGKSSvl+ L+  + +pr+++++Tr  +++                  +     s           ++++e  + e+    ++ev++ +  
  KKY19934.1  34 LVVVGDQSSGKSSVLEGLTDLP-FPRSSGLCTRFATHIMFrrvpdsgtfvsiipspD-----SspehvkrvmACKASIESLDSEQFAVIMTEVQDVMGI 126
                 69********************.7****************66666666666655541.....0444455644556666666668888889999999999 PP

                 HHHHHHT.SSSS--SS-EEEEEEETTS-SEEEEE---B-SSSGTT CS
   Dynamin_N  75 etekiag.ankgiskkvillkilsllvkgltlvDlPGldsvnkrd 118
                 + ++i+g +++++s +++ ++i ++++++++++D+PG+ +  ++ 
  KKY19934.1 127 SADTINGnSCSAFSGDILRVEIRGPNEPHMSVIDVPGIFRGTTQG 171
                 9999998788999999**********************9966654 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0019
                 CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N 146 ealflarevdpkgkrtivvltk 167
                 e l++a evd++g+rt++vltk
  KKY19934.1 181 EILEMAVEVDKDGHRTLGVLTK 202
                 788999***************9 PP

>> Dynamin_M  Dynamin central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   3.3e-17     3e-13       1     131 [.     214     329 ..     214     391 .. 0.80
   2 ?    1.3   0.0     0.018   1.6e+02     146     282 ..     415     551 ..     391     554 .. 0.69

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 3.3e-17
   Dynamin_M   1 vvdilenkvipLklGYvgVvnRsqkdInkkksieealkkEkaFFeshpayrkladkaGtpyLakkLnqiLvehIrkslPelkkkineklqklekeleel 99 
                 v+++l+++  +L lG+ +V+n sq++ ++ +s ++++  E+aFF                 L  +L+++L  hIr+++P+ k +i++ l++++++l++l
  KKY19934.1 214 VIELLTGRRHQLTLGWNIVRNPSQQELEQIQSSTDRHAIEQAFFLP---------------LRDRLQEVLGAHIRREFPKVKLEITKILRSCNERLDSL 297
                 6899****************************************85...............689*********************************** PP

   Dynamin_M 100 geskpsdeektklllqlitkfkedfkklieGe 131
                 g+ +++ +e++k+l+++ t f++ +  +++ +
  KKY19934.1 298 GPARDTPSEQSKFLMSVATRFSRLVDCALSAN 329
                 *9876655**************9888877776 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.018
   Dynamin_M 146 reiFnetlekslekidpleelsdeeirtairnsrGrelplfvpekaFealvkkqikkleepalkcvelVyeelekiveklekelkrFpnLreeikevve 244
                 ++ ++++l+k ++  +p  +   ++ + +++ srG e+ + + +k + a +++q + +e +a  ++  V   + +++     +l   ++++  +k+ + 
  KKY19934.1 415 HDDLHDILDKPTTVASPNGTNVLSWLSRVYNGSRGFEI-GTYDTKLLSATMREQTEHWEGIAYGYIIDVIGMVHEFICASLAQLCPDSRVQTGLKSLLM 512
                 45555555544444444444445677788888888887.67899999999*************999666666666666633333333578899999888 PP

   Dynamin_M 245 dllreqeeptkemienliemelayint.nhpdfigalka 282
                 + l ++ +++   ++ l+++e+  + t +++ f ++l++
  KKY19934.1 513 EDLIQKYKTALANVQFLLRVERTGTPTtMNHYFNENLEK 551
                 888888888888899999999876655366666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.52
# Mc/sec: 3923.07
//
Query:       KKY19935.1  [L=312]
Description: putative tetratricopeptide repeat protein 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-07   29.3   0.6    1.6e-06   28.3   0.6    1.6  1  TPR_12          Tetratricopeptide repeat
    2.4e-06   27.1   0.1     0.0015   18.2   0.0    2.7  2  TPR_1           Tetratricopeptide repeat
    4.2e-06   26.5   0.2      0.016   15.3   0.0    2.6  2  TPR_2           Tetratricopeptide repeat
    0.00039   20.2   0.3       0.57   10.3   0.1    2.9  3  TPR_7           Tetratricopeptide repeat
    0.00075   19.1   0.2     0.0015   18.2   0.2    1.5  1  TPR_11          TPR repeat
  ------ inclusion threshold ------
      0.011   15.6   0.2       0.78    9.7   0.0    2.7  2  Phage_tail_APC  Phage tail assembly chaperone protein
      0.031   15.1   0.8       0.49   11.4   0.0    2.8  3  TPR_14          Tetratricopeptide repeat
      0.034   14.6   0.2       0.12   12.9   0.1    2.0  1  TPR_19          Tetratricopeptide repeat
      0.078   13.2   2.0       0.22   11.8   2.0    1.8  1  ANAPC3          Anaphase-promoting complex, cyclosome, subuni
       0.13   12.1   0.1       0.28   11.0   0.1    1.5  1  DUF4295         Domain of unknown function (DUF4295)
       0.19   11.9   3.9       0.36   11.0   0.1    3.2  4  RPN13_C         UCH-binding domain
        2.5    7.6   6.2        1.1    8.8   0.1    2.0  2  Pneumo_att_G    Pneumovirinae attachment membrane glycoprotei


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.6   1.1e-09   1.6e-06       6      76 ..      69     136 ..      64     137 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.1e-09
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                    +a++l+   +y eAl+ +++al+ + +      ++ a  + n++ +y +l+++++A+++ +++l+++e
  KKY19935.1  69 TKSRANALFSSSQYSEALSTYDQALASCPN---YLDYDIAVLQSNISACYIKLEEWKDAVDAATRSLDRLE 136
                 44689***********************44...44458******************************988 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     1e-06    0.0015       5      34 .]      70      99 ..      66      99 .. 0.93
   2 !    6.2   0.0    0.0064       9.6       9      30 ..     113     134 ..     108     138 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1e-06
                HHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  5 ynlGnayfklgkydeAleyyekALelnPnn 34
                + ++na+f+  +y eAl  y++AL  +Pn+
  KKY19935.1 70 KSRANALFSSSQYSEALSTYDQALASCPNY 99
                579**********************99997 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0064
                 HHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   9 nayfklgkydeAleyyekALel 30 
                 ++y kl+++++A+++  + L  
  KKY19935.1 113 ACYIKLEEWKDAVDAATRSLDR 134
                 69*************9999875 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.1e-05     0.016       7      34 .]      72      99 ..      68      99 .. 0.95
   2 !    8.8   0.0    0.0013       1.9       5      30 ..     109     134 ..     105     138 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
       TPR_2  7 lGlayyklgdyeeAleafekAleldPnn 34
                +++a++ + +y eAl  +++Al+ +Pn+
  KKY19935.1 72 RANALFSSSQYSEALSTYDQALASCPNY 99
                89************************96 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0013
       TPR_2   5 ynlGlayyklgdyeeAleafekAlel 30 
                  n+  +y+kl ++++A++a  ++l  
  KKY19935.1 109 SNISACYIKLEEWKDAVDAATRSLDR 134
                 78999***************999975 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   0.00038      0.57       6      28 ..      73      95 ..      70     104 .. 0.87
   2 !    6.8   0.0     0.005       7.5       4      30 ..     110     137 ..     106     151 .. 0.85
   3 ?   -2.8   0.1       6.2   9.2e+03       1      13 [.     209     221 ..     209     225 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00038
       TPR_7  6 arlysrlGdyeeAielyeqsLal 28
                a++ ++  +y+eA++ y q+La 
  KKY19935.1 73 ANALFSSSQYSEALSTYDQALAS 95
                89999**************7775 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.005
       TPR_7   4 nLarlysrlGdyeeAielyeqsL.altk 30 
                 n+  +y +l ++++A++  ++sL +l++
  KKY19935.1 110 NISACYIKLEEWKDAVDAATRSLdRLEN 137
                 77789****************9988874 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 6.2
       TPR_7   1 aLlnLarlysrlG 13 
                 +Ll+ ar++ +lG
  KKY19935.1 209 SLLRRARARTSLG 221
                 6888899999888 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2     1e-06    0.0015       2      28 ..      74     100 ..      73     102 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1e-06
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdna 28 
                 +a+++  +y eA+  Y +Al+ +P++ 
  KKY19935.1  74 NALFSSSQYSEALSTYDQALASCPNYL 100
                 9***********************995 PP

>> Phage_tail_APC  Phage tail assembly chaperone protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.064        96      11      44 ..      62      97 ..      57     103 .. 0.68
   2 ?    9.7   0.0   0.00052      0.78      25      46 ..     241     262 ..     226     268 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.064
                    HHHHTHHHHSTTS--..-HHHHHHHHHHHHHHHHS- CS
  Phage_tail_APC 11 rLaasDwvqlpDspl..deeerqalkaYrqaLRDlP 44
                    +La+s  ++ +   l  +++  +al +Y qaL   P
      KKY19935.1 62 LLAESNATKSRANALfsSSQYSEALSTYDQALASCP 97
                    66667655554444411455599*********8777 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00052
                     --HHHHHHHHHHHHHHHHS--- CS
  Phage_tail_APC  25 ldeeerqalkaYrqaLRDlPeq 46 
                      ++   ++lk+ r aLRDlP +
      KKY19935.1 241 SSSLPPSDLKTVRTALRDLPTK 262
                     55555789************75 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00033      0.49       2      35 ..      67     100 ..      66     108 .. 0.89
   2 ?    0.9   0.0      0.74   1.1e+03      11      30 ..     115     134 ..     111     141 .. 0.74
   3 ?   -2.3   0.1       8.2   1.2e+04      14      14 ..     220     220 ..     209     240 .. 0.45

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00033
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPdda 35 
                 +a++ +a al+ + ++ eA+  +++ala +P+ +
  KKY19935.1  67 NATKSRANALFSSSQYSEALSTYDQALASCPNYL 100
                 578889*************************876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.74
      TPR_14  11 llalGdpdeAiallrralal 30 
                 +  l+++++A++++ r l++
  KKY19935.1 115 YIKLEEWKDAVDAATRSLDR 134
                 56678888888888888775 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 8.2
      TPR_14  14 l 14 
                 l
  KKY19935.1 220 L 220
                 2 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   7.8e-05      0.12       2      53 ..      77     133 ..      76     141 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.8e-05
      TPR_19   2 laegdyaeAlalleqalqedpk..naearl...lLAeallalgqldeAealLdalpe 53 
                 + + +y eAl+ + qal+  p+  + +++    +   ++++l ++++A ++  + ++
  KKY19935.1  77 FSSSQYSEALSTYDQALASCPNylDYDIAVlqsNISACYIKLEEWKDAVDAATRSLD 133
                 56789*****************8866666644566*************987766655 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.0   0.00015      0.22      29      78 ..      72     127 ..      46     130 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00015
                 HHHHHHHTT-HHHHHHHHHCT.SHHHC-H..HHHHHHH...HHHHHTT-HHHHHHH CS
      ANAPC3  29 lAlclylngqykrAyellrka.klnsksl..gcrylfA...qcllkLkkyeeAiaa 78 
                  A +l++++qy +A+  +++a  + ++ l   +++l      c++kL+++++A++a
  KKY19935.1  72 RANALFSSSQYSEALSTYDQAlASCPNYLdyDIAVLQSnisACYIKLEEWKDAVDA 127
                 499******************77777777555555544887999*********987 PP

>> DUF4295  Domain of unknown function (DUF4295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00019      0.28      22      33 ..     297     308 ..     293     309 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00019
     DUF4295  22 kmvKspKTGaYt 33 
                 kmvK++KTG Y+
  KKY19935.1 297 KMVKDEKTGGYS 308
                 9**********6 PP

>> RPN13_C  UCH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00024      0.36      47      80 ..      63      95 ..      36     113 .. 0.87
   2 ?   -2.5   0.0       3.7   5.6e+03      51      65 ..     146     164 ..     130     177 .. 0.61
   3 ?   -0.5   0.1      0.89   1.3e+03      46      72 ..     178     203 ..     167     210 .. 0.72
   4 ?   -0.8   0.0       1.1   1.6e+03      84      95 ..     283     294 ..     235     311 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00024
     RPN13_C 47 LPeegeateeelretlrSPqfrqalsslsqALqs 80
                L e ++at++  ++  +S+q+++als+ +qAL s
  KKY19935.1 63 LAE-SNATKSRANALFSSSQYSEALSTYDQALAS 95
                444.889999999*******************87 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.7
     RPN13_C  51 geate....eelretlrSP 65 
                 +++t      ++r++ +SP
  KKY19935.1 146 KNDTGeevkPNVRKNTNSP 164
                 3333322224555556666 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.89
     RPN13_C  46 hLPeegeateeelretlrSPqfrqals 72 
                  LPe +e++ ++l++   S  +++++s
  KKY19935.1 178 ELPE-DEDETQALQRLTISDTLKSSIS 203
                 5899.7777777777777776666665 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.1
     RPN13_C  84 gpvlsqlgLdee 95 
                 +++l+ +gL++e
  KKY19935.1 283 NGILKPFGLSTE 294
                 456666777766 PP

>> Pneumo_att_G  Pneumovirinae attachment membrane glycoprotein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00071       1.1     244     348 ..      10     115 ..       3     131 .. 0.83
   2 ?    0.3   2.2      0.27     4e+02     230     269 ..     147     187 ..     136     209 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00071
  Pneumo_att_G 244 stsdkeassttsqdsstrgdskkhtqrrktppatenrrsilstatppet.tkiqetrkptpkptaelkvnsregsssptavqknpttqnlvdCkeld 339
                     s++++s+t+ +  +   ++ ++t rrk +++ +   + ++   ppe+ +      ++t++  + l ++s+ +++  t +q++    n +d +   
    KKY19935.1  10 NHSPNHLSATEMPGDAGVRKDSEQTSRRKSAASESDAEEFHDARFPPEEeASLLAESNATKSRANALFSSSQYSEALSTYDQALASCPNYLDYDIAV 106
                   468999******999998888899999999**********9999988751567788899*******9999999999999999999999999988877 PP

  Pneumo_att_G 340 pdepekiCy 348
                    + + + Cy
    KKY19935.1 107 LQSNISACY 115
                   777777777 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.27
  Pneumo_att_G 230 sepqleprpsqrGkstsdkeassttsqdsst.rgdskkhtq 269
                    +   e++p+ r ++ s+ke  +tt +d+     ++++ tq
    KKY19935.1 147 NDTGEEVKPNVRKNTNSPKEKETTTADDTVIeLPEDEDETQ 187
                   44556788999999999999999999888774333333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       979  (0.0546043); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.50
# Mc/sec: 1865.66
//
Query:       KKY19936.1  [L=480]
Description: hypothetical protein UCRPC4_g04363 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.13   12.2   0.1       0.29   11.1   0.1    1.5  1  Microvir_lysis  Microvirus lysis protein (E), C terminus


Domain annotation for each model (and alignments):
>> Microvir_lysis  Microvirus lysis protein (E), C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   1.6e-05      0.29       3      26 ..     199     222 ..     197     225 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.6e-05
  Microvir_lysis   3 vssWkALnLRktLLmAssvRLkPL 26 
                     v s +ALn Rk  +mA   RLk L
      KKY19936.1 199 VLSNRALNKRKGAMMAEGKRLKAL 222
                     66889*****************88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3490.57
//
Query:       KKY19937.1  [L=409]
Description: putative mrna binding post-transcriptional regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.4e-46  153.7   0.0    7.6e-17   60.9   0.0    3.2  3  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    0.00011   22.1   0.1     0.0016   18.4   0.0    2.5  3  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif
    0.00012   22.0   0.0     0.0012   18.8   0.0    2.4  3  RRM_3         RNA binding motif
    0.00016   21.5   0.0      0.058   13.3   0.0    2.7  3  RRM_occluded  Occluded RNA-recognition motif
     0.0015   18.6   0.3      0.052   13.7   0.0    2.8  3  RRM_7         RNA recognition motif
  ------ inclusion threshold ------
      0.015   14.9   0.0      0.097   12.3   0.0    2.2  3  RRM_5         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
       0.24   11.6   0.0         35    4.6   0.0    3.4  4  PHM7_cyt      Cytosolic domain of 10TM putative phosphate tra


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   5.7e-12   1.5e-08       3      66 ..      67     130 ..      65     132 .. 0.86
   2 !   55.0   0.0     2e-18   5.1e-15       1      69 [.     158     228 ..     158     229 .. 0.97
   3 !   60.9   0.0     3e-20   7.6e-17       1      69 [.     284     347 ..     284     348 .. 0.97

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 5.7e-12
                 EESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETT CS
       RRM_1   3 VgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklgg 66 
                 +g L + ++e+ ++ +  + G+ +++k++rd   g++ g++fV+F ++e+A kAl  lng +++g
  KKY19937.1  67 MGELESWMDENFVRNVWFQMGEQVNVKMIRDkFSGSNAGYCFVDFSNPEAASKALT-LNGSQIPG 130
                 566666666777777777889999********************************.****9988 PP

  == domain 2  score: 55.0 bits;  conditional E-value: 2e-18
                 EEEESETTTSSHHHHHHHHHT.TSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFsk.fGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +fVg+L p+v+e  L +lF++ f + ks+k+++d   g s+g++fV+F ++ d ++Al  ++g   g+r++
  KKY19937.1 158 IFVGDLGPEVNEYVLVQLFQNrFPSCKSAKIMTDpISGMSRGYGFVRFSDQADQQRALTDMQGVYCGNRPM 228
                 8**************************************************************99999987 PP

  == domain 3  score: 60.9 bits;  conditional E-value: 3e-20
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +fVg+L+ +vte+eL+ +F++fG+i+ +k+++      kg++fV+F ++ +Ae A+++++g+ +g++++
  KKY19937.1 284 VFVGGLSGYVTEDELRSFFQGFGEITYVKIPPG-----KGCGFVQFVQRHAAEMAINQMQGYPIGNSRV 347
                 8*******************************7.....****************************987 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.24   6.1e+02      38      53 .]     106     121 ..      88     121 .. 0.87
   2 ?   -2.5   0.0       2.1   5.5e+03      38      53 .]     200     215 ..     195     215 .. 0.86
   3 !   18.4   0.0   6.1e-07    0.0016      14      52 ..     295     333 ..     281     334 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.24
  Nup35_RRM_2  38 vmyvkfesekdaekAL 53 
                  + +v f ++ +a kAL
   KKY19937.1 106 YCFVDFSNPEAASKAL 121
                  6789***********8 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.1
  Nup35_RRM_2  38 vmyvkfesekdaekAL 53 
                  + +v+f +  d ++AL
   KKY19937.1 200 YGFVRFSDQADQQRAL 215
                  67999***99999998 PP

  == domain 3  score: 18.4 bits;  conditional E-value: 6.1e-07
  Nup35_RRM_2  14 ielVlehFasfGeIvkhyvpkevsvmyvkfesekdaekA 52 
                  +++ + +F+ fGeI+   +p+++   +v+f  + +ae+A
   KKY19937.1 295 EDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMA 333
                  345677********************************9 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.86   2.2e+03      12      50 ..      89     117 ..      82     123 .. 0.56
   2 ?   -1.2   0.0      0.81   2.1e+03      40      56 ..     201     217 ..     197     223 .. 0.84
   3 !   18.8   0.0   4.8e-07    0.0012       4      58 ..     284     338 ..     282     350 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.86
                 S--HHHHHHHCHCCS.-ECEEEE-TTSSEEEEEESSHHHH CS
       RRM_3  12 elsredikellsklg.evayvdyekgdkegevrFkedeea 50 
                 ++ ++ i++ +s  +    +vd+++ ++           a
  KKY19937.1  89 QVNVKMIRDKFSGSNaGYCFVDFSNPEA-----------A 117
                 5555666666665543455666655444...........3 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.81
                 EEEEESSHHHHHHHHHH CS
       RRM_3  40 gevrFkedeeakkalek 56 
                 g vrF ++ + ++al  
  KKY19937.1 201 GFVRFSDQADQQRALTD 217
                 789*****999999865 PP

  == domain 3  score: 18.8 bits;  conditional E-value: 4.8e-07
                 EEEEE-SSS--HHHHHHHCHCCS-ECEEEE-TTSSEEEEEESSHHHHHHHHHHHH CS
       RRM_3   4 lklsGlnkelsredikellsklgevayvdyekgdkegevrFkedeeakkalekat 58 
                 +++ Gl+  ++ ++++ +++ +ge+ yv    g+  g v+F + ++a+ a++++ 
  KKY19937.1 284 VFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 338
                 678899999*****************************************99865 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0096        25      37      65 ..     103     130 ..      85     136 .. 0.79
   2 ?   -1.6   0.0      0.95   2.4e+03      42      72 ..     202     232 ..     200     234 .. 0.88
   3 !   13.3   0.0   2.3e-05     0.058       3      70 ..     283     349 ..     281     353 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0096
  RRM_occluded  37 dheGAivefkdekiagkasLaLdgsefeg 65 
                   + + ++v f++ ++a ka L L+gs++ g
    KKY19937.1 103 NAGYCFVDFSNPEAASKA-LTLNGSQIPG 130
                   555689999999888885.9******976 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.95
  RRM_occluded  42 ivefkdekiagkasLaLdgsefegkklrcGt 72 
                   +v f+d+++  +a+  ++g    ++ +r++t
    KKY19937.1 202 FVRFSDQADQQRALTDMQGVYCGNRPMRIST 232
                   58999****9999999999999999999987 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 2.3e-05
  RRM_occluded   3 tisllplsDtvnkariralveekegeikkivLvpdheGAivefkdekiagkasLaLdgsefegkklrc 70 
                   t+ + +ls  v+++++r++++   gei+ + + p +++ +v+f ++++a  a+ +++g+ + + ++r 
    KKY19937.1 283 TVFVGGLSGYVTEDELRSFFQGF-GEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQGYPIGNSRVRL 349
                   5566679999*************.*********************9999999999***9999988775 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.4   3.6e+03      44      62 ..      98     116 ..      82     127 .. 0.67
   2 ?    1.7   0.0      0.11   2.8e+02       4      24 ..     158     178 ..     156     238 .. 0.68
   3 !   13.7   0.0     2e-05     0.052       3      32 ..     283     313 ..     281     340 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.4
       RRM_7  44 enskaakgyvflvfedeks 62 
                 + s ++ gy f+ f++ ++
  KKY19937.1  98 KFSGSNAGYCFVDFSNPEA 116
                 4556778999998877554 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.11
       RRM_7   4 vFvGGlPiDiteeelkatfke 24 
                 +FvG l ++++e  l++ f++
  KKY19937.1 158 IFVGDLGPEVNEYVLVQLFQN 178
                 899999999999999998875 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 2e-05
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkvl.vdw 32 
                  vFvGGl   +te+el + f+ fg+++ v  
  KKY19937.1 283 TVFVGGLSGYVTEDELRSFFQGFGEITyVKI 313
                 69**********************9752555 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.2     3e+03      76      86 ..      91     101 ..      80     134 .. 0.53
   2 ?   -1.7   0.0      0.78     2e+03      65      89 ..     199     223 ..     195     237 .. 0.78
   3 ?   12.3   0.0   3.8e-05     0.097      21     102 ..     276     355 ..     256     365 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.2
       RRM_5  76 averavqHLnn 86 
                 +v+  ++ +++
  KKY19937.1  91 NVKMIRDKFSG 101
                 44444333333 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.78
       RRM_5  65 etalvqmgdasaveravqHLnnakl 89 
                 ++ +v  +d+ + +ra++ ++++  
  KKY19937.1 199 GYGFVRFSDQADQQRALTDMQGVYC 223
                 7788999999999***999999866 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 3.8e-05
       RRM_5  21 agvaegsVllVyglepdkvnldklFnlfclYgnvervkflktkketalvqmgdasaveravqHLnnaklfgkrlevalSKqq 102
                    ++++ ++V gl    v+ d+l  +f  +g++  vk+    k+  +vq  +  a+e a++ +++ ++ ++r+++   + q
  KKY19937.1 276 FTDPNNTTVFVGGLS-GYVTEDELRSFFQGFGEITYVKIPP-GKGCGFVQFVQRHAAEMAINQMQGYPIGNSRVRLSWGRSQ 355
                 456789999999996.689*******************965.579************************8889888776655 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.014        35     109     139 ..      91     121 ..      85     139 .. 0.83
   2 ?    0.8   0.0       0.2     5e+02     121     140 ..     197     216 ..     184     237 .. 0.73
   3 ?   -0.3   0.0      0.42   1.1e+03       3      32 ..     283     311 ..     281     315 .. 0.81
   4 ?   -0.2   0.1      0.39     1e+03     123     139 ..     318     333 ..     312     355 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.014
    PHM7_cyt 109 eieeerekvkkkplgaaFvtfesersaaava 139
                 +++  r+k++ +  g++Fv f++ ++a +++
  KKY19937.1  91 NVKMIRDKFSGSNAGYCFVDFSNPEAASKAL 121
                 5777899999999**********99999886 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.2
    PHM7_cyt 121 plgaaFvtfesersaaavak 140
                  +g++Fv f+++ + + ++ 
  KKY19937.1 197 SRGYGFVRFSDQADQQRALT 216
                 4799*******999999863 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.42
    PHM7_cyt   3 TvlvtgiPkelrseeklkeffeelypgkvv 32 
                 Tv+v g+   ++ e++l++ff+ + + ++v
  KKY19937.1 283 TVFVGGLSGYVT-EDELRSFFQGFGEITYV 311
                 888888888888.777******99888886 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.39
    PHM7_cyt 123 gaaFvtfesersaaava 139
                 g +Fv+f  +r+aa++a
  KKY19937.1 318 GCGFVQFV-QRHAAEMA 333
                 679****9.78888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2722.03
//
Query:       KKY19938.1  [L=577]
Description: putative cytosolic probable ctt1-catalase t [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   5.1e-178  592.0   0.0   6.4e-178  591.7   0.0    1.1  1  Catalase      Catalase
    5.4e-17   61.8   0.0    1.6e-16   60.2   0.0    1.9  1  Catalase-rel  Catalase-related immune-responsive


Domain annotation for each model (and alignments):
>> Catalase  Catalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  591.7   0.0  7.2e-182  6.4e-178       2     379 ..      35     417 ..      34     420 .. 0.97

  Alignments for each domain:
  == domain 1  score: 591.7 bits;  conditional E-value: 7.2e-182
                 -TTS-B-S-SSS-EEESTTS-BBTT-HHHHHHHHHHHT------SS--SEEEEEEEEEESS--TTT---GGGSSTT-EEEEEEEEE-SS--TT--SSSS CS
    Catalase   2 tseGapvsdnqnsltagerGplllqdvhlieklahfdreripeRvvhAkGagahgeFevtkdisdltkakllskvgkktpvlvRfStvagekgsadtaR 100
                 ts+G+p++++++s+++ge+Gplllqd+hl++ l+hfdreripeRvvhAkG+gahg+F++t+ ++dlt a+++s +gk +pv+vRfStv+ge+gs+d aR
  KKY19938.1  35 TSNGVPMPHPYESQRVGENGPLLLQDFHLVDLLSHFDRERIPERVVHAKGSGAHGVFTCTDPLDDLTIADIFSAKGKSCPVTVRFSTVGGESGSHDCAR 133
                 79************************************************************************************************* PP

                 S--EEEEEEEETTEEEEEEEESSSS-S-S-GGGHHHHHHHHSB-TTT-SB...-HHHHHHHHHT-GGGHHHHHHHHSGGGSBS-GGGS-EE--S-EEEE CS
    Catalase 101 dvrGfavkfyTeeGnwDlvgnntpvFfirDpikfpdlihsqkrepqtnlk...daamfwdflslnpeslhqvlilfsdrgipksyrhmngygvhtfklv 196
                 d+rGfavk++T+eGnwD+v nntpvFf+rDp+kfp++ih+qkr+p+t+l    +++mfwd+ls+npes+hqv+il++drgip++yr m+gy +ht klv
  KKY19938.1 134 DPRGFAVKLRTNEGNWDIVANNTPVFFLRDPAKFPHFIHTQKRDPATHLGggdNSTMFWDYLSQNPESIHQVMILMGDRGIPDGYRFMHGYLGHTIKLV 232
                 *************************************************99988999****************************************** PP

                 -TT--EEEEEEEEEETT---B--HHHHHHHHHH-TTHHHHHHHHHHHTT---EEEEEEEEEEHHHHTTT....HHHHT-TT----TTTS--EEEEEEEE CS
    Catalase 197 nkegevvyvkfhfktkqgvknltaeeaeklagedpdyatrdLyeaiekgeypewelyvqvmteeeaekl....rfnilDlTkvwpekevplrevGkltL 291
                 nk+ge+vy+++h+k++qg+k lt+eea     ++pd++++dLy aie+g+yp+w++ vq+mt+++ae+l    ++n++DlT+vwp++++plr+vG+++L
  KKY19938.1 233 NKKGEWVYCQLHMKSQQGTKFLTQEEA---GTKSPDHSQKDLYYAIENGDYPRWSVEVQTMTPKQAEELwetqKINVFDLTHVWPHAQFPLRKVGEFVL 328
                 **************************9...5789********************************98777779************************* PP

                 EE--S-HHHHTTT----TT---TTEE--S-HHHHHHHHHHHHHHHHHT-TTGGGSGGG---..--..-S----TT-.....S-S---SS- CS
    Catalase 292 nrnpenyFaevEqvafspsnlvpGiepseDklLqgRlfsYadtqryRlGvnyqqlpvNrpkakva..nyqrdGamrveankgkepnYepn 379
                 n+n++nyFaevEq+af+ps++vpGieps+D+++q+RlfsY+dt+r+R+GvnyqqlpvN+p+++++  n+qrdG+m++ +n+g++p Y ++
  KKY19938.1 329 NENAKNYFAEVEQAAFNPSHMVPGIEPSADPVFQSRLFSYPDTHRHRIGVNYQQLPVNAPRTAYKygNFQRDGQMAF-YNQGSRPAYLSS 417
                 ************************************************************65555559********8.899999***987 PP

>> Catalase-rel  Catalase-related immune-responsive
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   1.8e-20   1.6e-16       4      64 ..     449     510 ..     446     511 .. 0.96

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 1.8e-20
                   G--SSHHHHHHHH.HS-HHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH-HHHHHHHHHH CS
  Catalase-rel   4 fddhfsQagllyr.smseeekerlvnniafelskvedeeiqerqlehfakvDpdlgqrVaea 64 
                   ++++f+ +++l++ +++e ++er++nn+++++s +++eei++rq+++f++v++d+++r+++a
    KKY19938.1 449 REEDFKAPRALWEkVWDEGARERFINNVSGHMSTCQKEEIIKRQIAIFREVSEDIASRLEKA 510
                   489*********99*********************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3802.48
//
Query:       KKY19939.1  [L=121]
Description: hypothetical protein UCRPC4_g04366 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0043   17.5   0.1       0.01   16.3   0.0    1.6  1  ParB      ParB family


Domain annotation for each model (and alignments):
>> ParB  ParB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.6e-07      0.01      70     107 ..      13      50 ..       8      58 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.6e-07
        ParB  70 kkpkkkdkavvekLaefedkkqfarkktkkRlvsYefs 107
                 k++++ +k  vekL++  d k+f r ++++R++  ef+
  KKY19939.1  13 KDKSEDTKYIVEKLIKLGDNKIFLRLRVNGRMFDVEFG 50 
                 6677778889**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.31s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 782.91
//
Query:       KKY19940.1  [L=281]
Description: hypothetical protein UCRPC4_g04367 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-40  137.9   0.1    4.5e-40  137.2   0.1    1.3  1  TFB6      Subunit 11 of the general transcription factor TFII


Domain annotation for each model (and alignments):
>> TFB6  Subunit 11 of the general transcription factor TFIIH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.2   0.1   2.5e-44   4.5e-40       1     171 []      56     253 ..      56     253 .. 0.79

  Alignments for each domain:
  == domain 1  score: 137.2 bits;  conditional E-value: 2.5e-44
        TFB6   1 GYeslkellkdldklvdvlWvSgtpslqipyLlniaselldylekfppspratfklLrkLDkiFasLlaGeDvetgetlpGf....eeglragmstTdk 95 
                 GY s++e+++dl+++ +v+WvS+tp+lqipyLl++as+ll+yl++fp+s+++t++++rkLD++Fa+Ll+  D +  + l  +    + +lr+ +s+Td 
  KKY19940.1  56 GYDSIDEVVQDLEAVFNVVWVSNTPTLQIPYLLSLASTLLSYLPAFPFSAKSTLRMIRKLDEAFAHLLEQDDSNHLSGLHAQqfhnQGNLRRIVSRTDR 154
                 9*******************************************************************9998776655554433323456779****** PP

        TFB6  96 VRlksivertRvlvvevlereeeeee...............eeedeeededeeeeeeeeee........................eeeeedeededeel 155
                 VR++s+ e tRv + +   +  e+ +               +   +              e                         + +++e++e ++ 
  KKY19940.1 155 VRIRSVCELTRVCITDKSLSPAEDLRdegsdassnsssednN--GN--------------ErmndlddeqsqhhdhdmcghihhiAQVDQHEDQEIAHK 237
                 **************9976655444444566666655543220..22..............122333344445556889999999767777777899999 PP

        TFB6 156 emevarvYektleklG 171
                 +  +a+ Yektle lG
  KKY19940.1 238 KQGIANAYEKTLELLG 253
                 9************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1918.81
//
Query:       KKY19941.1  [L=305]
Description: putative meiotic recombination protein dmc1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-30  105.7   0.0    3.4e-30  105.0   0.0    1.4  1  RRM_Rrp7        Rrp7 RRM-like N-terminal domain
    1.1e-29  103.0   9.8    1.1e-29  103.0   9.8    2.1  2  RRP7            Ribosomal RNA-processing protein 7 (RRP7) C-t
  ------ inclusion threshold ------
       0.15   11.9   0.5         26    4.7   0.0    3.4  4  RRM_1           RNA recognition motif. (a.k.a. RRM, RBD, or R


Domain annotation for each model (and alignments):
>> RRM_Rrp7  Rrp7 RRM-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0   0.0   5.7e-34   3.4e-30       3     161 ..       9     186 ..       7     187 .. 0.80

  Alignments for each domain:
  == domain 1  score: 105.0 bits;  conditional E-value: 5.7e-34
    RRM_Rrp7   3 kGFlvlPlkLpkskklknkatHYlylkkHqtknndeessrslFlvNlPiettletlkkffqkvalgatiesvvsslltdeqe.dvsidltkltsdlel. 99 
                   F+vlP+++ k+k    +atHY+ylk+H+++ +d++s rslFlvN+P+ tt  +lk+ f+++  ++++e+v    + +    + si  +  +++ ++ 
  KKY19941.1   9 ADFTVLPVQIAKTK-AFPAATHYIYLKPHDPRIPDPSSARSLFLVNIPVSTTEGHLKHLFNTQIGAGRVEEV---YFGEARAqKASILSQTQSAQQKKs 103
                 56***********5.55689****************************************************...454444404444334444444443 PP

    RRM_Rrp7 100 ...kdeekdeeeakl...................PkntglvkfvDkssvelafnalkKlsksstkkeWeldk...keplgsqrflnk 161
                    k+e++++                          ++++v+fvD+ s+e++++a+kK+s++ t + W  +     + lg++r++ +
  KKY19941.1 104 rkrKRENVED----FeaaleacqlprswnsdihtSGAHAVVVFVDRTSMEASLKAAKKISRKGTGIAWGDGLesaSSSLGLSRYIAH 186
                 3333333344....35666**************99*********************************8765445666777777665 PP

>> RRP7  Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.5     0.041   2.5e+02      61      80 ..      94     114 ..      72     115 .. 0.46
   2 !  103.0   9.8   1.8e-33   1.1e-29       2     117 ..     189     303 ..     188     305 .] 0.84

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.041
        RRP7  61 eekakkkekkkkkkkell.dF 80 
                 ++++++++k +k+k+e++ dF
  KKY19941.1  94 QTQSAQQKKSRKRKRENVeDF 114
                 222233333333333333355 PP

  == domain 2  score: 103.0 bits;  conditional E-value: 1.8e-33
        RRP7   2 ksrpseeelqeevdeymeefdkeeeeekkeekkkeeevDeDGfvtVtrgkkaaa.keeaaeekakkkekkkkkkkelldFYrFQirekkkeelaeLrkk 99 
                  ++ps++el ++v++ym++f+k ee+++k+++k+++ +D+DGfvtVtrg ++ a ++  +++++++k+k   k+k l dFYrFQ+rek+kee+ +L ++
  KKY19941.1 189 LRYPSRKELLHSVEDYMTAFNKLEEARHKADAKRRSMPDDDGFVTVTRGTRGGAiRS-DEAKEIAEKQK--AKNKGLEDFYRFQMREKRKEEQGKLIRQ 284
                 57999*******************************************887777443.32344443333..3334678********************* PP

        RRP7 100 FeeDkekieelkekr.kfk 117
                 FeeD++k++e+k++r   +
  KKY19941.1 285 FEEDRRKVAEMKRRRgTLR 303
                 *************995555 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0043        26       1      21 [.      49      69 ..      49      81 .. 0.85
   2 ?   -0.4   0.0      0.18   1.1e+03      47      60 ..     109     122 ..     109     128 .. 0.90
   3 ?    2.5   0.0     0.021   1.2e+02      35      62 ..     131     158 ..     118     165 .. 0.77
   4 ?   -1.1   0.0      0.28   1.7e+03      15      38 ..     201     226 ..     199     236 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0043
                EEEESETTTSSHHHHHHHHHT CS
       RRM_1  1 lfVgnLppdvteeeLkelFsk 21
                lf+ n+p ++te  Lk lF+ 
  KKY19941.1 49 LFLVNIPVSTTEGHLKHLFNT 69
                7889***************87 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.18
                 SSHHHHHHHHHHHT CS
       RRM_1  47 eskedAekAlealn 60 
                 e+ ed e+Alea++
  KKY19941.1 109 ENVEDFEAALEACQ 122
                 6899******9986 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.021
                 TTSEEEEEEEEESSHHHHHHHHHHHTTE CS
       RRM_1  35 tgkskgfafVeFeskedAekAlealngk 62 
                  ++s  +a V F ++ ++e+ l+a  + 
  KKY19941.1 131 IHTSGAHAVVVFVDRTSMEASLKAAKKI 158
                 5677889*************99977665 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.28
                 HHHHHHTTSCEEEEEEEEE..TTTSE CS
       RRM_1  15 LkelFskfGpiksiklvrd..etgks 38 
                 +++++  f++ ++++   d  ++  +
  KKY19941.1 201 VEDYMTAFNKLEEARHKADakRRSMP 226
                 57788889999999999995444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1362  (0.0759663); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 1905.32
//
Query:       KKY19942.1  [L=348]
Description: putative secreted lipase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.1e-07   28.8   0.0    3.7e-06   26.6   0.0    1.9  1  Lipase_2       Lipase (class 2)
    0.00064   20.4   0.0    0.00076   20.1   0.0    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family
     0.0057   16.3   0.2      0.013   15.2   0.2    1.5  1  Abhydrolase_1  alpha/beta hydrolase fold
       0.01   15.4   0.0      0.016   14.7   0.0    1.2  1  DUF676         Putative serine esterase (DUF676)
  ------ inclusion threshold ------
       0.01   14.9   0.0      0.016   14.3   0.0    1.4  1  DUF1749        Protein of unknown function (DUF1749)
      0.013   15.2   0.0      0.027   14.2   0.0    1.5  1  PGAP1          PGAP1-like protein
      0.026   14.4   0.0      0.074   12.9   0.0    1.6  1  Palm_thioest   Palmitoyl protein thioesterase
      0.078   12.8   0.0        8.6    6.1   0.0    2.2  2  Abhydrolase_2  Phospholipase/Carboxylesterase
       0.12   11.7   0.0       0.21   10.8   0.0    1.4  1  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Lipase_2  Lipase (class 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.9e-09   3.7e-06       2      97 ..      51     145 ..      50     256 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1.9e-09
    Lipase_2   2 ePviivhGnsdlaaeklskliqkflekgyteaelYattygdteestslerle.kCeyvkqlRklilaVlkyTga.kkvdivahsmGvpiaRkailGgk 97 
                 +Pv+i hG   ++ e l+ l +++ +++y     +++tyg       +  l+   e   ++ ++i  V + Tg  +k++iv+hs+G+  + ++ ++ +
  KKY19942.1  51 NPVVILHGLGATYYEDLNYLEAYLQTQDYCT---FSLTYGAYDGFPFVGGLKpINESAAEIASFITDVYSQTGSeNKINIVGHSEGAFQSLYVPKFET 145
                 7****************************99...**********99999999878999**************96269*********876666655554 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.8e-07   0.00076       1     104 [.      53     166 ..      53     298 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.8e-07
                    EEEE--GC.....GC.HHHHHHHHCCT.CEEEEE--TTS.TS-GGCS--HHH....CHHHHHHHCCTT.....TTSEEEEEETCHHHHHHHHHHCC CS
  Abhydrolase_6   1 vlllHGagssassWl.vapLaallaag.vhvlapDlpGh.Grsdpppldled....ladlaalldelaa...gggpvvlvGHSlGGalalaaapla 86 
                    v+ lHG+g+  + +     L a+l  + ++++++ +  + G   p   +l +    +a++a +++++ +   + +++ +vGHS G++ +l    ++
     KKY19942.1  53 VVILHGLGA--TYYEdLNYLEAYLQTQdYCTFSLTYGAYdG--FPFVGGLKPinesAAEIASFITDVYSqtgSENKINIVGHSEGAFQSLY---VP 141
                    799***886..444345677555555558556555544455..3333333333334599999999999999999999**********9999...66 PP

                    ..........EE.EEES-..----TTT CS
  Abhydrolase_6  87 ........lvvg.vlldppptalpagl 104
                            +v + v+++pp    ++++
     KKY19942.1 142 kfetgvsaIVDKiVAIAPPT--HGTSF 166
                    6667777655556*****43..22222 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   6.3e-06     0.013       1     116 [.      51     167 ..      51     198 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.3e-06
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB...CHHSHHHHHHHHHHHHHHCTTSSEE.EEEETHHHHHHHHHHHH CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacin..ddygtasvaddldrildalgddklt.lvGhSmGGmialayaae 93 
                    +++vilhGl+++ +   +    +a  +  +d++++ l   +y  ++        + + a +a ++  +  ++g ++ + +vGhS G +++l++   
     KKY19942.1  51 NPVVILHGLGATYYEDLN--YLEAYLQ-TQDYCTFSLTYGAYDGFPFVGGLkpINESAAEIASFITDVYSQTGSENKInIVGHSEGAFQSLYVPKF 143
                    799********9999888..6666665.899999999999999988653334433478889999999966666665555************99888 PP

                    H...GGGEEEEEEESECSSCCHHHHH CS
  Abhydrolase_1  94 y...perVkalvllgaidpaasliea 116
                           V+++v++++  p + ++ a
     KKY19942.1 144 EtgvSAIVDKIVAIAP--PTHGTSFA 167
                    7999999999999999..65555544 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   7.9e-06     0.016       8      90 ..      53     134 ..      49     159 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.9e-06
      DUF676   8 vVlvHGlqgn.saDlelikeqlekikeklpeekieflmsennes.ktfkgidvlgerlaeevlevvkkkkdknkkiSfvghSlGg 90 
                 vV+ HGl +  ++Dl++++++l++  +++    + + ++ +       k i++ +  +a+ + +v  +  ++ +ki +vghS G 
  KKY19942.1  53 VVILHGLGATyYEDLNYLEAYLQT--QDYCTFSLTYGAYDGFPFvGGLKPINESAAEIASFITDVYSQTGSE-NKINIVGHSEGA 134
                 89********99************..6677777777777776541456778888888888888888888887.6********996 PP

>> DUF1749  Protein of unknown function (DUF1749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   8.2e-06     0.016      21     121 ..      41     139 ..      12     159 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.2e-06
     DUF1749  21 eyetsgelkskallFigGLgdGll.tvpyvkelanaldeagwsvvelqlsssyggwG.tgsLkrDaeeieklveYlkktksGeekkekvvlmGHstGsq 117
                 +y+ +++ +++ ++ + GLg   +  + y   l + l+  ++  ++l+   +y g+  +g+Lk  +e  +++  +++   s + +++k+ ++GHs G+ 
  KKY19942.1  41 DYSCRSTTHPNPVVILHGLGATYYeDLNY---LEAYLQTQDYCTFSLT-YGAYDGFPfVGGLKPINESAAEIASFITDVYSQTGSENKINIVGHSEGAF 135
                 67788888999999999998765413455...5567888999999875.579****7469999999999999999999987788*************98 PP

     DUF1749 118 dvly 121
                 + ly
  KKY19942.1 136 QSLY 139
                 7775 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.4e-05     0.027      77     133 ..     110     165 ..      98     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.4e-05
       PGAP1  77 kyIlslysssekeptsviliGHSmGGivaraaltlknyikqsvntiltlasPhalpp 133
                   I+++y s++  ++++ ++GHS G + +  + + ++ +   v++i+ +a P + + 
  KKY19942.1 110 SFITDVY-SQTGSENKINIVGHSEGAFQSLYVPKFETGVSAIVDKIVAIAPPTHGTS 165
                 5699999.8899999*************************************98765 PP

>> Palm_thioest  Palmitoyl protein thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.7e-05     0.074       1     110 [.      52     225 ..      52     261 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.7e-05
  Palm_thioest   1 PvviwhGldsaesn.mqklaeliekligtyvknveigeseaedrkasffgnlndqvea.......vckklelangfhaiGfSQGglflRaliercdd 89 
                   Pvvi+hGl++   + ++ l+ +++++ + ++ +++ g+ +      + ++++n+ +++       v +++  +n+++++G+S G+ f   ++ + + 
    KKY19942.1  52 PVVILHGLGATYYEdLNYLEAYLQTQ-DYCTFSLTYGAYD-GFPFVGGLKPINESAAEiasfitdVYSQTGSENKINIVGHSEGA-FQSLYVPKFET 145
                   9*******555555689999999985.5666777766654.355566666666666665554444666667799********987.66688888854 PP

  Palm_thioest  90 kkn..vrnlislggpqaGvfg.....................l....................................l 110
                     +  v++++ ++ p  G +                      l                                    l
    KKY19942.1 146 GVSaiVDKIVAIAPPTHGTSFaglynlayifgntsrelvgdaLdalgcpacddlgpdgtaveklndgtpivqdgntvtiL 225
                   44488999999999999988756555555444444444333304434444444444444444445555545555554442 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.014        28      10      27 ..      46      63 ..      39      87 .. 0.77
   2 ?    6.1   0.0    0.0043       8.6      83     122 ..     101     140 ..      98     151 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.014
                   SS---EEEEEE--TT--S CS
  Abhydrolase_2 10 kdkaqavviflHGlGdsg 27
                   +  + + v+ lHGlG++ 
     KKY19942.1 46 STTHPNPVVILHGLGATY 63
                   5667788999*****986 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0043
                    HHHHHHHHHHHHHHHHHTT--GGGEEEEEETHHHHHHHHH CS
  Abhydrolase_2  83 ikksaekleelidaelkkgipssriiigGFSqGaalalyl 122
                    i++sa ++  +i    ++   +++i i+G S Ga  +ly 
     KKY19942.1 101 INESAAEIASFITDVYSQTGSENKINIVGHSEGAFQSLYV 140
                    889999******************************9996 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0001      0.21       7      94 ..      53     141 ..      48     186 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0001
  Hydrolase_4   7 vvlvHGlae.hsgryaelaeaLaaqGfavyalDhrGhGrse..gkrghvpsfddyvdDlaafvekvk.eehpelplfllGhSmGGliallyl 94 
                  vv++HGl+  +++  + l ++L+ q++ ++ l +   G  +  +  g ++++++  + +a+f++ v  ++ +e ++ ++GhS G++ +l + 
   KKY19942.1  53 VVILHGLGAtYYEDLNYLEAYLQTQDYCTFSLTY---GAYDgfPFVGGLKPINESAAEIASFITDVYsQTGSENKINIVGHSEGAFQSLYVP 141
                  8899998751567788899999999999998864...5555447789999*************99994555555***********9987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:01.09
# Mc/sec: 964.18
//
Query:       KKY19943.1  [L=581]
Description: putative high affinity methionine permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-72  245.3  35.6    1.4e-72  244.9  35.6    1.1  1  AA_permease_2  Amino acid permease
    3.8e-18   65.4  31.1    5.4e-18   64.8  31.1    1.2  1  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.9  35.6   1.5e-76   1.4e-72       4     424 ..      70     502 ..      67     511 .. 0.88

  Alignments for each domain:
  == domain 1  score: 244.9 bits;  conditional E-value: 1.5e-76
  AA_permease_2   4 lsafalvigsvigsgifvkn.....laasggpalilwvwiavligslavllvyaElssa.lprsgGiyvytkaafgkkvaflsawfnwfayvpvla 93 
                    ++ ++l i+ +ig+gi+ ++     +++s+g al+ w  ++ li sl+ l vy+E++s  ++rsg ++vy+++a++++ + + + f+    +++++
     KKY19943.1  70 ITIIFLNISKMIGTGIYSTPssvltGTGSVGLALLYWP-LGFLI-SLSSLTVYLEYASYfPNRSGSEVVYLEQAYPRPRYLFPVTFAIQTVILSFS 163
                    68899****************98555555555444444.44444.479********9999********************9999999999999999 PP

  AA_permease_2  94 silsv.aasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl..stetdtffpng 186
                    s++++ +a+yl   ++++  +++w  +++a+a +++ +l+ +++++ s ++ n +gi+k+ ++l+++ i+gl++++g++  +    + +d f +++
     KKY19943.1 164 SSNAIvLAQYLYK-INGH-SPTDWEKKGVAVAGYTVAVLLVLFNTRFSFRLSNAIGIVKV-ITLVFIGITGLVVLGGNTRVDDptANFKDAFAGTT 256
                    9975527777777.5555.499**************************************.8****************999877544444566668 PP

  AA_permease_2 187 wpg..vllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggk.vvaiivv 277
                    ++g  v ++l+ +++s++G+e++ nv++evk+  k+++  +f++lliv++ly l nia++++v++  ++ + ++   a+lff +v+g+  + + ++
     KKY19943.1 257 SSGygVTNALYKIIFSYAGYENSFNVVNEVKNpvKTLRTNAFLSLLIVAILYQLANIAYFAAVSKADLEASTQVA--ASLFFTNVFGSsGAVRGLN 350
                    887557**************************999*********************************9999875..9*******98879999*** PP

  AA_permease_2 278 ilialsllgaintavigssrvlealardgvlP..rffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigali 371
                    +lials++g+++++++g+sr+l++++r+gvlP  rf+a++++fg+p++   + ++ +li++l+  +  ++a+nf++++ ++++ ++ + ++ig+ i
     KKY19943.1 351 FLIALSSFGNLLAVLLGTSRMLRECGRQGVLPfpRFWASTRPFGTPTGPYLVKWVMTLIMILAPPA--GDAFNFIVDLQVYPSALFAASMSIGLYI 444
                    *********************************************************887644433..79************************** PP

  AA_permease_2 372 lrkkrphl..kr..pgki.lvaiigalfllfllvalffppkgpatqssliyt...iiltva 424
                    +r++r++   +r  ++++ + +++ +  +lf+l+++++pp+  +   s++y+   +   v+
     KKY19943.1 445 VRWRRRKAgiPRseFRAWdIAVTFNIAANLFILIMPWYPPEPGQSDVSFWYAtyvV---VG 502
                    ****998877777788898899999***************************7532...22 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8  31.1   6.1e-22   5.4e-18       2     469 ..      72     518 ..      71     524 .. 0.79

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 6.1e-22
  AA_permease   2 vlvialggviGtglfvglgvvlsqaGplga.llayllagvviflvmlslgeiatngp.ksggfytyasrflgp...elGfviGlnylfswitvlalel 94 
                  +++ ++  +iGtg++   ++vl   G +g+ ll + l++++++       e a+++p +sg+  +y ++   +    + ++ ++++++++ +   +++
   KKY19943.1  72 IIFLNISKMIGTGIYSTPSSVLTGTGSVGLaLLYWPLGFLISLSSLTVYLEYASYFPnRSGSEVVYLEQAYPRpryLFPVTFAIQTVILS-FSSSNAI 168
                  68999************999999999999946666666666666666666****************998876645457788888855555.6678999 PP

  AA_permease  95 taasiliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfak 192
                  + a++l ++ +  +  +++ ++++  ++v +++ l++ +++ + +  + ++k+i+++   i g ++l g  + +        d++++fk+ + +    
   KKY19943.1 169 VLAQYLYKINGHSPTDWEKKGVAVAGYTVAVLLVLFNTRFSFRLSNAIGIVKVITLVFIGITGLVVLGGNTRVD--------DPTANFKDAFAGT--- 255
                  99999999998877777788888888999999999999999998888999999988866666654444444333........6*********999... PP

  AA_permease 193 eeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspf..vifikesgvsvl 288
                    +++ +++  ++  ++f+++G+e+  ++  Evk+P k++       +++++i+Y l+ +++ + v+  dl   +++a  as+f  ++f+++  v++l
   KKY19943.1 256 --TSSGYGVTNALYKIIFSYAGYENSFNVVNEVKNPVKTLRTNAFLSLLIVAILYQLANIAYFAAVSKADLEASTQVA--ASLFftNVFGSSGAVRGL 349
                  ..666789999**********************************************************977777665..566633555555556666 PP

  AA_permease 289 aplinaviltaalssansslysasRvlyslakdglaP..kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisal..iglivwll 382
                  ++li++ +++++    ++ l  +sR+l    ++g++P  ++ +     g P   +l+ +++ l+++l+    ++a  +fnf++ +  +  + ++  ++
   KKY19943.1 350 NFLIALSSFGNL----LAVLLGTSRMLRECGRQGVLPfpRFWASTRPFGTPTGPYLVKWVMTLIMILA----PPAGDAFNFIVDLQVYpsALFAASMS 439
                  666666666555....5667779**************99999999999*****************955....555567****8776553155566666 PP

  AA_permease 383 iilsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklh 469
                  i l ++r+R+     +  i ++ f+a+ +  ++   +aa+++il i+ +y++ + +++++++ +a+ + + ++++++ +i+  v++h
   KKY19943.1 440 IGLYIVRWRRR----KAGIPRSEFRAWDIAVTFN--IAANLFIL-IMPWYPPEP-GQSDVSFWYATYVVVGIGIIVICVIYYYVWVH 518
                  66666699998....77789999**998877664..55666665.567888888.77888888888888888887777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.53
# Mc/sec: 3295.18
//
Query:       KKY19944.1  [L=681]
Description: putative zn 2cys6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.026   13.5   0.2      0.064   12.3   0.2    1.7  1  Fungal_trans  Fungal specific transcription factor domain
       0.09   13.4   0.4         10    6.9   0.0    3.3  3  DUF4404       Domain of unknown function (DUF4404)


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   7.1e-06     0.064      22     174 ..     213     372 ..     184     379 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.1e-06
  Fungal_trans  22 pktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektssdralher..h 116
                   +k            s++l++a+la  +lf++s+++ s+  + +      +  l+ + +         +s +i+ ++ ++  + +  + +a  e   +
    KKY19944.1 213 RKR-----------SNFLFTAVLAASCLFLPSTAAMSKRLSAH------CHELALHVIK-----QRKRSAEIVLAFIICIPWMSFGEQWADDETpfY 287
                   444...........88999999999999999999999666555......2333444333.....33333566665555555555555588888899* PP

  Fungal_trans 117 hgvavrlarslgLhrnpsyvgkks.............................lwklweeeaesrrRlwwaaFylDktialklGrpp 174
                   ++va+++a +l+L++    v + s                             +++       +r R+w+a F+l++ i+l  Gr++
    KKY19944.1 288 LSVALSMALDLSLNKIVTGVPS-SlvdhsvpradcidarralemdgflgveatSIHGRRL-LRRRERIWLALFVLERGICLARGRNY 372
                   **************99988874.359999********************77643333333.67799***************999987 PP

>> DUF4404  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.3      0.06   5.4e+02      26      57 ..      10      42 ..       5      68 .. 0.64
   2 ?    6.9   0.0    0.0011        10      22      61 ..     405     445 ..     394     447 .. 0.89
   3 ?    0.2   0.0      0.13   1.2e+03      65      82 ..     553     570 ..     551     571 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.06
     DUF4404 26 Leslaedieellaeedaaaeeee.laerlneav 57
                +e++  +iee+++++++ +++++  + +l+e++
  KKY19944.1 10 IEKAVHQIEEAIRKSKKSDPQSQlSVSKLEELL 42
                555666777777777776666665444444443 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0011
     DUF4404  22 tralLeslaedieellaeedaaaeeee.laerlneaverFe 61 
                  r+ L +l++di+++ ++ d + ++++ ++e++++ +e+F 
  KKY19944.1 405 LRRALPALIDDIRRACDSHDIRGASSDeIVEQIHSNIENFF 445
                 678999**************99888778**********995 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.13
     DUF4404  65 PklagvlreildsLanmG 82 
                 P++ ++++e +d+L ++G
  KKY19944.1 553 PSVRNLINETADVLERIG 570
                 9999*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       865  (0.0482459); expected 358.6 (0.02)
Passed bias filter:                      716  (0.0399353); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.49
# Mc/sec: 4210.27
//
Query:       KKY19945.1  [L=564]
Description: putative coenzyme a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-97  323.9   0.6    1.2e-56  191.6   0.1    2.0  2  CoA_trans        Coenzyme A transferase
  ------ inclusion threshold ------
      0.026   14.5   0.1      0.051   13.5   0.1    1.4  1  AcetylCoA_hyd_C  Acetyl-CoA hydrolase/transferase C-terminal 
      0.046   12.0   0.0      0.077   11.3   0.0    1.2  1  Mal_decarbox_Al  Malonate decarboxylase, alpha subunit, trans
      0.093   12.7   0.0        1.1    9.2   0.0    2.4  3  AcetylCoA_hydro  Acetyl-CoA hydrolase/transferase N-terminal 


Domain annotation for each model (and alignments):
>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.6   0.1   2.6e-60   1.2e-56       3     216 ..      79     307 ..      77     308 .. 0.98
   2 !  131.1   0.1   8.2e-42   3.7e-38       3     216 ..     343     541 ..     341     542 .. 0.97

  Alignments for each domain:
  == domain 1  score: 191.6 bits;  conditional E-value: 2.6e-60
                 HHHHHHCTT--TTEEEEE-SBTTBTHHHHHHHHHHHHT.TTSEEEEESTTTE...ECCHHHHHTTTEEEEEESCTTBBCEHHHHHHHHTTSSEEEEHHH CS
   CoA_trans   3 taaeavakeikdGmtvavGGFgligiPealiaalarsg.vkdltviiseagv...lglgplllngsvkkviasyggetvnprfgkqflsgelefellpq 97 
                 +a+eav+ ++k+G++++  GFgl+g++e++i+al r++  +dl  ++++ag     gl  l+++g+vkk i+sy g   n++++k++l ge+++el pq
  KKY19945.1  79 DANEAVK-DVKSGSVIFSAGFGLCGTAETIIQALSRRKdLTDLSAVSNNAGSvgdAGLAILTKTGQVKKLILSYLGA--NKTLEKKYLTGEISIELCPQ 174
                 789***9.**************************99887***********98899**********************..******************** PP

                 HHHHHHHHHHHHTEETTEEEESTTTTSHGGTT.................ESEEEEETTEEEEEEESSSEEEEEEECCEEETTCSEESSGGGHTTHSHHH CS
   CoA_trans  98 gtlaerlraGgaglpelgfltntgigtlvapk.................lkkvpgfgGaeyilepalkadvalikaskadeegnlvfeksagnfnkpai 179
                 gtlaer+r+Ggag+p  +f+t+tg+ t+++ +                 + +++ f+G++y  e+alk dva+++a+k d+egn +f+ +++ f+ p +
  KKY19945.1 175 GTLAERIRCGGAGIP--AFYTPTGVSTFIQSGgiphrlgpngtvsepgiPRETRIFDGKTYNFERALKGDVAILRAYKVDKEGNCQFRYTTKAFG-PLM 270
                 ***************..********************************88********************************************.*** PP

                 HHHEEEEEEEEEEEECTTSSECCCESBTGGGHSEEEE CS
   CoA_trans 180 aeaakvtileveeivekgkldpekvliPgvlvdavve 216
                 a+a    i+e e+ive+g++ p  ++ Pg+++d++v 
  KKY19945.1 271 AKASALAIVEAENIVEIGEIGPHDIDLPGMFIDRIVP 307
                 ***********************************95 PP

  == domain 2  score: 131.1 bits;  conditional E-value: 8.2e-42
                 HHHHHHCTT--TTEEEEE-SBTTBTHHHHHHHHHHHHTTTSEEEEESTTTEECCHHHHHTTTEEEEEESCTTBBCEHHHHHHHHTTSSEEEEHHHHHHH CS
   CoA_trans   3 taaeavakeikdGmtvavGGFgligiPealiaalarsgvkdltviiseagvlglgplllngsvkkviasyggetvnprfgkqflsgelefellpqgtla 101
                 ++a+++ake+k G +v++G    +g+P +l+ ++++    +++ i+se+g+lg+gp++ +++v+ +++++g+etv+ + g++ ++++++f  +++g+++
  KKY19945.1 343 RIAKRAAKELKQGYYVNLG----VGMP-TLAPSYLPE--GRKVWIHSENGILGMGPYPTPEEVDPDLINAGKETVTLVPGASCFDSSESFG-MIRGGHI 433
                 57899999***********....****.*********..9***************************************************.******* PP

                 HHHHHHHHTEETTEEEESTTTTSHGGTTESEEEEETTEEEEEEESS.SEEEEEEECCEEETTCSEESSGGGHTTHSHHHHHHEEEEEEEEEEEECTTSS CS
   CoA_trans 102 erlraGgaglpelgfltntgigtlvapklkkvpgfgGaeyilepal.kadvalikaskadeegnlvfeksagnfnkpaiaeaakvtileveeivekgkl 199
                 ++  +G+++++ +g+l+n +i+    +k   ++g+gGa+++++++  +++v+   ++ +d+ +++v + +++ +++ +++   ++t+l+v+++++++  
  KKY19945.1 434 DVSILGALQVGANGDLANYMIP----GK--VFKGMGGAMDLVSNPDeTKIVVCTDHVAKDGSPKVVEHVQLPLTGARVVS--TIITDLCVFQVDREQGG 524
                 **********************....77..8***********99862689******************************..8**************** PP

                 ECCCESBTGGGHSEEEE CS
   CoA_trans 200 dpekvliPgvlvdavve 216
                 +++++l Pgv+v++v+e
  KKY19945.1 525 LTLTELAPGVTVEQVKE 541
                 ***************98 PP

>> AcetylCoA_hyd_C  Acetyl-CoA hydrolase/transferase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.1e-05     0.051      36     119 ..     435     511 ..     420     527 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.1e-05
                      EEEEE-SEEETTS-EESSECTTCCTCGGTTHHHHHHHHHHSTT-EEEEE--SEETTTTEESEESS-STTSSECE-TTT-SEEEE CS
  AcetylCoA_hyd_C  36 vsinsalevdltGqvnseslggrvvsGvGgqldFvrgaalskggksiialpStakkgeiSrIvpslkegahvtttrhdvdyvvT 119
                      vsi  al+v  +G  +  ++ g+v+ G+Gg +d v++  +    k ++++  +ak+g+  ++v +++      t    v++++T
       KKY19945.1 435 VSILGALQVGANGDLANYMIPGKVFKGMGGAMDLVSNPDE---TKIVVCTDHVAKDGS-PKVVEHVQ---LPLTGARVVSTIIT 511
                      79999*******************************9988...889999999999997.78887777...33344444555555 PP

>> Mal_decarbox_Al  Malonate decarboxylase, alpha subunit, transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.7e-05     0.077     137     217 ..     240     321 ..     234     328 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.7e-05
  Mal_decarbox_Al 137 iPnvalvaaekadreGnlytGanted.tPaiveatafkdgiviaqvneivd..kl..prvdiPadwvdfvveadkpfaieplftrd 217
                        +va++ a+k d+eGn    + t    P +  a+a    + i+  ++iv+  ++    +d+P+ ++d +v a    ++e + tr 
       KKY19945.1 240 KGDVAILRAYKVDKEGNCQFRYTTKAfGPLMAKASA----LAIVEAENIVEigEIgpHDIDLPGMFIDRIVPATADKHLEVVKTRP 321
                      5689**************999998873577766665....56777777776553321479*********************99995 PP

>> AcetylCoA_hydro  Acetyl-CoA hydrolase/transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00024       1.1       7      48 ..      75     116 ..      70     125 .. 0.91
   2 ?    0.1   0.0      0.15   6.8e+02     125     161 ..     241     286 ..     228     298 .. 0.67
   3 ?   -3.3   0.0       1.6   7.4e+03     137     147 ..     353     364 ..     342     372 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00024
  AcetylCoA_hydro   7 kklkepeeaaelvkngshielsgftavgtakaipkylakrkv 48 
                      k+ k+++ea++ vk+gs i  +gf   gta  i ++l +rk+
       KKY19945.1  75 KLYKDANEAVKDVKSGSVIFSAGFGLCGTAETIIQALSRRKD 116
                      77889*********************************9987 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.15
  AcetylCoA_hydro 125 iDvalieataldedGylnlGvg.........vrakKviiEvaelvv 161
                       Dva++ a  +d++G   +  +           +  +i+E +++v 
       KKY19945.1 241 GDVAILRAYKVDKEGNCQFRYTtkafgplmaKASALAIVEAENIVE 286
                      49*************5555433333345544445556777766665 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.6
  AcetylCoA_hydro 137 edG.ylnlGvgv 147
                      ++G y+nlGvg+
       KKY19945.1 353 KQGyYVNLGVGM 364
                      345477888774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3824.74
//
Query:       KKY19946.1  [L=468]
Description: putative major facilitator superfamily transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-30  105.5  35.5    2.2e-29  102.5  34.5    2.0  1  MFS_1     Major Facilitator Superfamily
     0.0037   17.0   3.1       0.01   15.5   3.1    1.7  1  UNC-93    Ion channel regulatory protein UNC-93


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5  34.5   2.5e-33   2.2e-29       2     352 ..      53     453 ..      52     454 .. 0.82

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 2.5e-33
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 ++++++s+l+r+++g a    l ++ gi+  ++  +l++++++++++ +p   +  r++++ +l +  +++++++++l f++++  ++++r+l Gl++g
  KKY19946.1  53 AVLFLCSFLDRTNVGNAKLYGLEKAIGITDLQYDSALSIFYAFYIISEVPSNLVLKRVSPKIWLPVLTFTWGVFAMCLGFITGFGSFMAVRALLGLAEG 151
                 67789999999998888888******************************************************77777878988************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee..... 188
                 +l+p+++ +++ ++++ e ++ igl+++++sl+ ++g ll+  l++ +       Wr++f+i +i++ ++++  ++llp   ++ +  +++e+e     
  KKY19946.1 152 GLLPGIVLYLSSMYTRAELALRIGLFYTAASLSGAFGGLLARGLSEIGYrggqspWRWIFIIEGILTSVVGIASYFLLPNGLSSARFLTDEEREygvqr 250
                 *********************************************7766***********************999999888888888777777788888 PP

       MFS_1 189 ..............kgtgpaplvpawkallkdpvlw.......illialllfffgfsg..lltllpl.........................ylqevlg 239
                               +++++++++++ + +++ +  w       ++l +l+       +  +++ +p                           + + lg
  KKY19946.1 251 landkskgqtgstgESVEKFQWSEVARGFFSVQ-TWlsasayfAILSGLY----S--FglFVSSSPPppppppplhpdpthheefpnhpklpTIIKGLG 342
                 888889999998888888888888556666555.4665432222222222....2..13344445446666666555555555544444433269**** PP

       MFS_1 240 ls.glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdla.ppeeagt 336
                 ++ +  ++   + ++++++a++ ++++++sdrl  r r +++l+ l +a +g+a++a+ +s+ + + + +l+ +gl   +p++l+++s++  +  +++t
  KKY19946.1 343 YTsNEAQLW--SVIPYAAAAVVTVIVAFISDRL--RLRGVMMLITLPIAIIGYAVIANVDSNKVRYGMTFLMATGLYGSVPPVLSWISNNSaGHYKRAT 437
                 **8657777..9999999999999********6..569*********************9999999999999996666667777776666548899999 PP

       MFS_1 337 asglfntagslggalg 352
                 a++l   + + gg+++
  KKY19946.1 438 ATALQLAIANCGGFVA 453
                 9999997777788776 PP

>> UNC-93  Ion channel regulatory protein UNC-93
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   3.1   1.2e-06      0.01      42     143 ..      88     190 ..      75     194 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.2e-06
      UNC-93  42 slaiiyavftvanlvapsvvdlltakwalvigallyaifql..gFlllnkyylyissallGvgaallwtgqGsyLsenstretiernssilwallkssl 138
                 +l+i ya++ ++ + +  v++ +++k+ l + ++++ +f +  gF+  +  +  +  allG++   l  g   yLs+  tr +     +++++  + s 
  KKY19946.1  88 ALSIFYAFYIISEVPSNLVLKRVSPKIWLPVLTFTWGVFAMclGFITGFGSF-MAVRALLGLAEGGLLPGIVLYLSSMYTRAELALRIGLFYTAASLSG 185
                 689**************************99999999997533788888765.5678**************************9999999999999888 PP

      UNC-93 139 liGgi 143
                  +Gg+
  KKY19946.1 186 AFGGL 190
                 88886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 3003.99
//
Query:       KKY19947.1  [L=288]
Description: putative conserved mitochondrial protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.034   14.8   0.1       0.14   12.8   0.0    2.0  2  Auxin_repressed  Dormancy/auxin associated protein


Domain annotation for each model (and alignments):
>> Auxin_repressed  Dormancy/auxin associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.15   2.6e+03      75      90 ..      29      45 ..      12      68 .. 0.56
   2 ?   12.8   0.0     8e-06      0.14      49      97 ..     123     171 ..      92     187 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.15
  Auxin_repressed 75 rsvfhPGsn.latkrlG 90
                     rs+f+  s   a k++G
       KKY19947.1 29 RSIFDSISKdAASKKVG 45
                     55555554423444444 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 8e-06
  Auxin_repressed  49 asagtpstPvtPtassptsarkdnvWrsvfhPGsnlatkrlGaelfdkp 97 
                      +  +tp+  +tP++ + + ar   +W sv+ P  ++   +lG +  d p
       KKY19947.1 123 SLSTTPTRNITPSNLTTSQARGRSLWNSVYIPFQDKLLSKLGESHPDLP 171
                      3457888899999999999*************99988888887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 1822.21
//
Query:       KKY19972.1  [L=770]
Description: putative rhamnogalacturonan lyase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-27   94.5   1.0    9.7e-27   92.6   1.0    2.1  1  fn3_3            Polysaccharide lyase family 4, domain II
    4.5e-16   59.2   0.4    8.6e-16   58.2   0.4    1.5  1  CBM-like         Polysaccharide lyase family 4, domain III
    1.6e-14   54.0   0.2    4.6e-13   49.1   0.1    2.1  2  Lactonase        Lactonase, 7-bladed beta-propeller
  ------ inclusion threshold ------
      0.047   14.0   0.0       0.25   11.6   0.0    2.2  1  CarboxypepD_reg  Carboxypeptidase regulatory-like domain


Domain annotation for each model (and alignments):
>> fn3_3  Polysaccharide lyase family 4, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   1.0   2.2e-30   9.7e-27       3      74 ..     549     624 ..     547     625 .. 0.97

  Alignments for each domain:
  == domain 1  score: 92.6 bits;  conditional E-value: 2.2e-30
       fn3_3   3 gavsglavltgsvvsfqne...tkayQYwteadss.gsftipnVkpGtYrltvYadglfgdykqdsvtVtagkttt 74 
                 ga+ ++avl++++v+fq++   tkayQYw ++d + g+++i++Vk+GtYrlt+Yadg+fg+y++d+++++agktt+
  KKY19972.1 549 GAKDPIAVLAQNGVDFQDNvldTKAYQYWSDIDPTsGYVQISRVKAGTYRLTIYADGIFGQYEHDNIVIHAGKTTD 624
                 8999****************************9999**************************************97 PP

>> CBM-like  Polysaccharide lyase family 4, domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.4   1.9e-19   8.6e-16       1      96 [.     639     767 ..     639     770 .] 0.84

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 1.9e-19
    CBM-like   1 tlWeIGepDrtaaeFlngdak.lkntlmh...............lyPsddlvytvGtsdaskdwlfaqvnr................yktttwtikFkl 67 
                 +l++IG+pD++++eF++g+++   +   h               ++P+    y vG s++s+d+++++++                   +++wti F++
  KKY19972.1 639 ELFRIGTPDKSSGEFRHGNTPdQTH-PLHlpeyriywavydyptDFPN-GTRYHVGRSNDSRDFNYVHWSVfggyanslrpttyysnGDVNNWTIIFDV 735
                 59*****************774333.2236778999****66666666.99*********************************999999********* PP

    CBM-like  68 kevq..aagtatLrialagasa.arlqvrvNg 96 
                  ++q  ++++at+ i+laga++ a  + +vN 
  KKY19972.1 736 HRDQlkDTQQATFAIQLAGAKTaAGNTDTVNA 767
                 555546899***********996666666774 PP

>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.1     1e-16   4.6e-13     142     242 ..      36     137 ..      11     153 .. 0.88
   2 ?    2.5   0.0     0.015        68      81     128 ..     193     240 ..     185     252 .. 0.78

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 1e-16
                 STTEEEEEE-TTSSEEEEEETTTTEEEEEEE.-TTS-EEEEEEEE-STT--EEEEEE-TTSSEEEEEETTTTEEEEEEEE-TTTEEEEEEEE.ESS-TS CS
   Lactonase 142 sphaHsvvldpdgkfllvpDLGtDrvrvykldkatgkltepasvklppgsGPRHlaFhpdgkiaYvvnELsstvsvfsydeatgaleelqtv.stlpeg 239
                 ++ +H   +d + kf+++ D     + v  +d+a+g+++e++ +++p  + PRHl+ hp+g++aYvv E  + ++v++ d++tg+l+ ++t+ + +p+ 
  KKY19972.1  36 ASCVHGLAIDSSTKFIYSADDDGNAIWVHSFDQANGTVKEVQYLAAPTDADPRHLVVHPNGQYAYVVFEAGNALAVYTRDDSTGKLTYTNTTyPLIPSS 134
                 6779**********************************************************************************8887651555555 PP

                 S-S CS
   Lactonase 240 ftg 242
                  tg
  KKY19972.1 135 TTG 137
                 555 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.015
                 EE.SSS-EEEEEE-TTSSEEEEEETTTTEEEEEEB.TTSEBESECEEE CS
   Lactonase  81 vssegaspchlsvdedgkllavAnYsggsvsvfpldadgslkeasqvl 128
                  s+e+++ +   v ++ +lla+ n s+g+++v+ ld ++ l++++ v 
  KKY19972.1 193 SSNEPEETATCLVLQNDRLLAAVNKSSGAIDVLTLDGQNLLGSQNYVA 240
                 455677777778889999999999999999999999999888886655 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.6e-05      0.25      37      76 ..     584     624 ..     580     630 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.6e-05
  CarboxypepD_reg  37 dGafrlrglppgtysvtvsapG.yatatreevtltagqttt 76 
                      +G+ +++ +++gty++t+ a+G + +++  +++++ag+tt+
       KKY19972.1 584 SGYVQISRVKAGTYRLTIYADGiFGQYEHDNIVIHAGKTTD 624
                      7999******************55566678*******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.49
# Mc/sec: 4716.18
//
Query:       KKY19973.1  [L=382]
Description: putative glycoside hydrolase family 105 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-87  293.6   0.0    2.1e-87  293.4   0.0    1.0  1  Glyco_hydro_88   Glycosyl Hydrolase Family 88
  ------ inclusion threshold ------
      0.035   12.6   0.2      0.046   12.2   0.2    1.1  1  Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127


Domain annotation for each model (and alignments):
>> Glyco_hydro_88  Glycosyl Hydrolase Family 88
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.4   0.0   2.4e-91   2.1e-87       2     343 ..      30     380 ..      29     381 .. 0.97

  Alignments for each domain:
  == domain 1  score: 293.4 bits;  conditional E-value: 2.4e-91
                     HHHHHHHHHHHTTT--CCTSSTTCCE.HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCTTS-CTTSGGGTGHHHHHHHHHHHH-THHHHHH CS
  Glyco_hydro_88   2 ikkvngsfikkkeegkvielkkenewewtnGvflsglleayeatgdkeyldyakawadslideggktelelDdidigllllllyeltkderykea 96 
                     ik++++ f+ k ++g+ i++k +n wewt+G+ l+gl+++y  tg++  l+++k+w+++ + eg++  +++++++++l+l++lye  +d+ y  +
      KKY19973.1  30 IKDETDHFLLKLPDGRIIDTKGWNDWEWTHGIGLYGLYQYYTLTGNDSTLSIIKSWFKDRFREGTT--KNINTMSPFLTLAYLYEASHDPTYLPW 122
                     8999*********************************************************99998..9************************** PP

                     HHHHHHHHHHCS-B.TTS.B.S...BTTSTTEEETHHHHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHHHBETTTSEB-SEEETTTTSTTS.. CS
  Glyco_hydro_88  97 aeeladyvlakpprtseGgfwh...kkkepeqlWlDgLfMaipllaklskvtgepkyldeaikqflltarhlfdpetGlyyhgwdesgtedwak. 187
                     ++ +a++ + + prt  Gg++h   ++ + ++lW D+L+M+++ l+k+++++++p y++e  +qfll+ ++lfd  tGl++hgw++++  +    
      KKY19973.1 123 LDSWAEWAMYDLPRTTYGGMQHityNNDNVNELWDDTLMMTVLPLIKIGQILNRPHYIEEGKRQFLLHIQYLFDTSTGLFFHGWKFDSSTPGGLg 217
                     *************************999***********************************************************99765546 PP

                     .....--BHHHHHHHHHHHHHHHHH..S-TT-TTHHHHHHHHHHHHHHHHCTS-.TTSSEBSBTT-TT.TTSSBEHHHHHHHHHHHHHHHHTTSS CS
  Glyco_hydro_88 188 .....efWaRgngWalaglaevlel..Lpekekarqelinllrdlvkalaklqd.eeglWhqilddgs.kesylEtSatalfvygLakgvnkgll 273
                          + WaRgn+W+++++++vl++  Lp ++     l ++lr++++al+  qd ++glW+++ld ++ ++sylEtSa a+f+yg++k+++k+++
      KKY19973.1 218 hnfarARWARGNSWLTIVIPDVLDMlnLPPNDHFHIILLDTLRAQISALKIFQDpKTGLWRTLLDVPEsEGSYLETSAAAGFAYGILKSIRKRYI 312
                     77777********************77788888888999******************************************************** PP

                     -HHHHHHHHHHHHHHHHHCEE-TTS-EEE-SEETS--SCTC.HHHHTS-EESS-HHHHHHHHHHHHHHHHH CS
  Glyco_hydro_88 274 dkkkykkvaqkawkallkkaveedGqllvkqvsvgtgiggd.dyYksvdvnsiedygvgafllalievlrl 343
                     ++++y++va ka k++l k  +edG+  + +vs+gt++g d + Y + +++s+ +yg++++++al e+ r+
      KKY19973.1 313 PREEYEDVAIKAVKGVLAKTRQEDGE--LLDVSFGTAMGSDrEHYLKIERTSM-PYGQAMAIMALGEFSRV 380
                     *******************9******..*************************.***********999875 PP

>> Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   5.2e-06     0.046      85     220 ..      20     151 ..       4     165 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.2e-06
                      HHHHHHHHHHHCH.SSS-B-GCCTHHSSEETTEESH----HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCS-CCHHHHHTTTHH CS
  Glyco_hydro_127  85 ldrlvdelakaQq.edGYlsavtelkneakkeawapdshelYnlgkliegavayyqatgkeklldvatrladyleevleklgdeqlqkalvpeh 177
                      +d l + l ++ +  d +l  +++ + +  ++ w +     ++ g  + g+ +yy++tg+++ l++++    ++    +++ + + ++    + 
       KKY19973.1  20 IDLLTNNLVNIKDeTDHFLLKLPDGR-IIDTKGWND---WEWTHGIGLYGLYQYYTLTGNDSTLSIIK---SWF---KDRFREGTTKNINTMSP 103
                      55555555555554555555555555.555667777...3366777789*****************87...589...67777776554444443 PP

                      CTHHHHHHHHHHHHT-CHHHHHHHHCCHHCCHCC........T-HCTTT-S CS
  Glyco_hydro_127 178 ggieealvklyelTgdkrYldlAkrfidergldp........eklaykqde 220
                           +l+ lye+  d+ Yl +   + +++++d         ++ +y++d+
       KKY19973.1 104 ---FLTLAYLYEASHDPTYLPWLDSWAEWAMYDLprttyggmQHITYNNDN 151
                      ...489**************************9966666665556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2629.53
//
Query:       KKY19974.1  [L=238]
Description: putative allantoate permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-17   61.4   2.2    8.4e-17   61.1   2.2    1.0  1  MFS_1          Major Facilitator Superfamily
      0.004   17.1   2.5      0.042   13.8   0.3    2.3  2  TB2_DP1_HVA22  TB2/DP1, HVA22 family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   2.2   9.3e-21   8.4e-17       2     131 ..      89     218 ..      88     220 .. 0.92

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 9.3e-21
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 ++++fl al+ ++ ++a  + + ed ++  +++++l+t+ +++ +   +p+ +l++r+   ++l + +++++  l++ + a++ +  ll++r l G+++
  KKY19974.1  89 VFTYFLQALDKGTMSFASIMNIREDNHLVDQQYSWLTTCIYIAILCVEYPINWLIQRIPIAKTLGTVVIIWGTILACHA-ATTNFaGLLAVRTLLGIFE 186
                 699**********9999988**************************************9888***********945555.4455559************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfs 131
                 ++  p+ ++l + w+++ee+++a+ +++++++
  KKY19974.1 187 AFCQPSFVVLSSMWYKREEQAQAVTYWYMMNG 218
                 *****************************976 PP

>> TB2_DP1_HVA22  TB2/DP1, HVA22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.3   4.7e-06     0.042       3      68 ..     104     170 ..     102     179 .. 0.77
   2 ?    3.1   0.1      0.01        93      11      27 ..     198     216 ..     185     230 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.7e-06
  TB2_DP1_HVA22   3 yaslkalesk.eksdet.kwltYWvvfafltvvesladvllswiPfYylfKllfllwlvlpqtqgaty 68 
                    +as+  ++++    d++  wlt  +++ ++++ve+ +++l++ iP+  ++ +++++w  +  + +at+
     KKY19974.1 104 FASIMNIREDnHLVDQQySWLTT-CIYIAILCVEYPINWLIQRIPIAKTLGTVVIIWGTILACHAATT 170
                    5677777666344467756**98.899999***************************66655555554 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.01
  TB2_DP1_HVA22  11 sk.eksdet.kwltYWvvf 27 
                    s   k++e+ + +tYW ++
     KKY19974.1 198 SMwYKREEQaQAVTYWYMM 216
                    44444555559*****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1577.42
//
Query:       KKY19975.1  [L=1022]
Description: hypothetical protein UCRPC4_g04298 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1022 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1676  (0.0934798); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.52
# Mc/sec: 5878.20
//
Query:       KKY19976.1  [L=766]
Description: putative ubiquinone biosynthesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-33  113.0   0.0      2e-32  111.8   0.0    1.6  1  ABC1       ABC1 family
    6.7e-16   58.0   0.4    7.8e-08   32.1   0.0    2.6  2  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.0   2.3e-36     2e-32       2     118 ..     321     438 ..     320     439 .. 0.95

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 2.3e-36
        ABC1   2 elgkkleeiFaefdeePiAaASiaqVhrAklk.sgeeVavKvqrpgvkkriksDlellkllakllkkflkelrldleelvdefskslleEldferEAkn 99 
                 ++g+ +e+ F+ef+++Pi+aAS+aqVh+A+lk +ge++avKvq+p ++  +++Dl+l+++++++lk+f++e++  le+l +e++ sl++Eldf+ E+kn
  KKY19976.1 321 DTGHRIEDDFEEFSKTPIGAASLAQVHTAVLKeTGEKIAVKVQHPALATYVRLDLALTRFTFSTLKRFFPEYD--LEWLSREMEFSLPQELDFSLEGKN 417
                 68999***************************99***************************************..************************ PP

        ABC1 100 aekfrenfaklke..vkvPkv 118
                 a ++ + f++ +   + +P+v
  KKY19976.1 418 AMRTSKYFKEHSSlpLIIPNV 438
                 *********999534777777 PP

>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.2   4.6e-09   4.1e-05      55      93 ..       1      38 [.       1      41 [. 0.94
   2 !   32.1   0.0   8.8e-12   7.8e-08      40      93 ..     106     159 ..      91     163 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 4.6e-09
                HHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr 55 iykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93
                +y++eG+r++y+Gl+p+ll+ +   a++f lye++k  +
  KKY19976.1  1 MYRTEGIRSFYSGLTPALLGLT-HVAVQFPLYEYFKMKF 38
                59*******************9.9***********9877 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 8.8e-12
                 STTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr  40 skksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                  +  ++++++++ k+i+ eeG r++y G++ nl+r +pa++ ++++ye+l + +
  KKY19976.1 106 PTGPRYKGVIRTCKTILAEEGWRAFYAGIGTNLIRAVPAAMTTMLTYEFLSKEI 159
                 45556677999*************************************997755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 5060.19
//
Query:       KKY19977.1  [L=135]
Description: putative ubiquinol-cytochrome c reductase complex 14 kda protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-45  151.2   0.6    7.7e-45  151.0   0.6    1.0  1  UCR_14kD  Ubiquinol-cytochrome C reductase complex 14kD subun


Domain annotation for each model (and alignments):
>> UCR_14kD  Ubiquinol-cytochrome C reductase complex 14kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.0   0.6   4.3e-49   7.7e-45       1     100 []      14     113 ..      14     113 .. 0.99

  Alignments for each domain:
  == domain 1  score: 151.0 bits;  conditional E-value: 4.3e-49
    UCR_14kD   1 pllskllkplakwyanaagyrklGLrydDllseenedvqeALrrLpeeeaydRvfRlkrAlqlslkhklLPkeewtkpeedvrYlkpyieevekeaaer 99 
                 p+l++ ++p+a+wy+naagyr++GLrydDl++ee+ +vq+AL+rL+++e+ydRvfRl+rA+qlsl+h+lLP++ewtk+eed++Yl+++ie+ve+e++e+
  KKY19977.1  14 PWLERAITPFANWYCNAAGYRQMGLRYDDLIPEESMVVQQALKRLSPKESYDRVFRLRRAFQLSLSHQLLPRDEWTKAEEDTHYLHDLIEQVEAEEKEK 112
                 699***********************************************************************************************9 PP

    UCR_14kD 100 e 100
                 +
  KKY19977.1 113 K 113
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.33s 00:00:00.78 Elapsed: 00:00:00.50
# Mc/sec: 818.89
//
Query:       KKY19978.1  [L=394]
Description: putative dna-3-methyladenine [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-14   54.6   0.0    2.5e-14   53.6   0.0    1.5  1  HhH-GPD   HhH-GPD superfamily base excision DNA repair protei


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   1.4e-18   2.5e-14       2      87 ..     208     339 ..     207     354 .. 0.95

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 1.4e-18
                 HHHHHTTS-HHHHHHHHHHHHHHHS..........HCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH........................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................ RF
     HhH-GPD   2 sailsqqtsderanriierlferfg..........fptpedladadeekLrelirelGfyrrKakyikelArilv........................ 66 
                 s i+ qq+s ++a++i +++  +f           fptp ++a+ d + Lr +    G+++rKa+yi+ lA+++v                        
  KKY19978.1 208 SGIMAQQVSGAAAKSIKNKFIGLFHegqpedqsvmFPTPAQVAATDITRLRLA----GLSQRKAEYIQGLAQKFVsgelstemllkatdeevmekliav 302
                 679**************************************************....****************************************** PP

                 ................S-SSS--TTSHHHHHHHHHHT CS
                 ................xxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  67 ................gkpdvlivvDvhvrrilkrlr 87 
                                 +++dv++  D++v+r++  + 
  KKY19978.1 303 rglgrwsvemfacfglKRTDVFSTGDLGVQRGMAAFM 339
                 ****************99**************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 2392.22
//
Query:       KKY19979.1  [L=402]
Description: putative gpi-anchored cell wall organization protein ecm33 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-12   46.0   1.0    1.4e-11   44.3   0.2    2.4  2  Ecm33           GPI-anchored cell wall organization protein
    6.3e-05   23.1   5.4        1.5    8.9   0.4    4.6  5  Recep_L_domain  Receptor L domain
    0.00033   20.6   3.0       0.13   12.2   0.2    2.7  3  LRR_5           BspA type Leucine rich repeat region (6 copie
  ------ inclusion threshold ------
      0.092   12.5   0.1       0.45   10.3   0.1    2.2  1  LRR_8           Leucine rich repeat
       0.17   12.4   7.5        2.4    8.7   1.8    4.7  3  LRR_4           Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> Ecm33  GPI-anchored cell wall organization protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.2     4e-15   1.4e-11       1      40 []       1      46 [.       1      46 [. 0.95
   2 ?   -1.5   0.0      0.84     3e+03      24      37 ..     318     330 ..     313     332 .. 0.80

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 4e-15
       Ecm33  1 maflKYllPALaaagaaaAaS..sCk....ggtttIenQgDAdgLa 40
                m+f+KY+lP+L +agaa+AaS  +C     +g  tI++Q++Ad+L+
  KKY19979.1  1 MGFTKYILPVLSVAGAAFAASngTCPdtddDGAYTITSQSEADALS 46
                99*********************99888788899***********8 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.84
       Ecm33  24 kggtttIenQgDAd 37 
                 k g+ +I++ +++d
  KKY19979.1 318 K-GQFNIQSTSELD 330
                 4.899999988886 PP

>> Recep_L_domain  Receptor L domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.4   0.00043       1.5       2      82 ..      48     123 ..      47     137 .. 0.79
   2 !    5.3   0.1    0.0059        21      64     100 ..     163     199 ..     142     211 .. 0.65
   3 !    5.9   0.2    0.0037        13      25      98 ..     178     260 ..     157     268 .. 0.60
   4 !    5.1   0.1    0.0068        25      22      57 ..     262     298 ..     220     311 .. 0.73
   5 ?    3.0   0.0     0.029     1e+02       5      47 ..     296     332 ..     294     338 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00043
                     ESEEESBEEEECCHCTSBGGGGGGGGG--EESS-EEEESE.T-SSEGCGTT--EEESSSSBTTTEEEEEES-TT-SBEE-TT CS
  Recep_L_domain   2 CtvieGnLeitltseneeeellsflsnveeitGylliknt.nlkslsflenLrvIrgrelfeskyalaildnknleeLglps 82 
                     Ct+ +G + i +           +++ v++itG+l  +n+ +l+s+   ++L+ I g    e+  +l+ l+++ l+++ + +
      KKY19979.1  48 CTTFDGTVVIDSSVSG-----NIQINGVQQITGNLSAYNAtALTSI-STDQLNAIGGYFRLEEITVLSTLQMSSLTSVDVIN 123
                     9999999999988777.....36899**************555555.5699*****98888889999999999987776655 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0059
                     TEEEEEES-TT-SBEE-TTTSEESSSEEEEESETTSB CS
  Recep_L_domain  64 kyalaildnknleeLglpslkeitsgsvviskNpkLC 100
                       a+ +++n+ l++ ++++l e+ts+  v  +  +L 
      KKY19979.1 163 VGAMEVTNNDYLTDFNVNNLAEVTSYLTVAANGADLS 199
                     4467788888888888888888887655554444444 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0037
                     GGGG--EESS-EEEESET-SSEGCGTT--EEESSSSBTTTEEEEEES-TT...........-SBEE-TTTSEESSSEEEEESETT CS
  Recep_L_domain  25 flsnveeitGyllikntnlkslsflenLrvIrgrelfeskyalaildnkn...........leeLglpslkeitsgsvviskNpk 98 
                       +n+ e+t yl+++ +       ++nL + +  + f +  ++++ +  n            +  +  +l+++ + ++v+++N+k
      KKY19979.1 178 NVNNLAEVTSYLTVAANGADLSIEFPNLLTAANLT-FRNVSSVSVPSLANvtgalgcysnsFKTFSAANLTTVGN-ALVFNDNSK 260
                     45788888888888888777777788887665544.455666666666665555555533333333333333333.555556655 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.0068
                     GGGGGGG--EESS-EEEESE.T-SSEGCGTT--EEES CS
  Recep_L_domain  22 llsflsnveeitGylliknt.nlkslsflenLrvIrg 57 
                     +  +++++  + G  +i+n+ +lk ++ + +L++I g
      KKY19979.1 262 TNISIPELLSVGGAYQIANNsALKVIDGFTKLKTIGG 298
                     4455667777888888888888888888888888877 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.029
                     EESBEEEECCHCTSBGGGGGGGGG--EESS-EEEESET-SSEG CS
  Recep_L_domain   5 ieGnLeitltseneeeellsflsnveeitGyllikntnlksls 47 
                     i G L ++  ++n       +l+ +e ++G ++i++t++ + s
      KKY19979.1 296 IGGGLDFSGDFTN------VSLPALEDVKGQFNIQSTSELDCS 332
                     5666666666666......689**************9665555 PP

>> LRR_5  BspA type Leucine rich repeat region (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0024       8.6      52     115 ..      78     141 ..      58     145 .. 0.65
   2 !    6.2   0.1    0.0026       9.4      20      92 ..     114     183 ..      93     220 .. 0.67
   3 !   12.2   0.2   3.6e-05      0.13      42      96 ..     244     298 ..     215     324 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0024
       LRR_5  52 aFsncssltsitipssltsigey.aFsncsslkeitlpsnlttigssaFsnc.slesitipssvtk 115
                 + +n + ltsi+  ++l+ ig y   ++++ l+++++ s+lt+++   F +  +l+s+t++s v+k
  KKY19979.1  78 SAYNATALTSIST-DQLNAIGGYfRLEEITVLSTLQM-SSLTSVDVINFVGLpNLQSLTFSSGVQK 141
                 3445557777777.56666665524666666777776.6788888888888778888888777765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0026
       LRR_5  20 ssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlt 92 
                 ss+ts++   F +  +l+s+t++s++++ +     n+ +l+s++   +l+s+g    +n++ l+++++ +nl 
  KKY19979.1 114 SSLTSVDVINFVGLPNLQSLTFSSGVQKASGVRIVNT-QLQSLDG-IELDSVGAMEVTNNDYLTDFNV-NNLA 183
                 3566777777777777777777777777777777777.7777765.3666666666666666666666.4444 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 3.6e-05
       LRR_5  42 psslteigsy.aFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigs 96 
                   +lt++g+  +F++ s++t+i+ip+ l+  g y  +n+s lk i+  ++l+tig 
  KKY19979.1 244 A-NLTTVGNAlVFNDNSKITNISIPELLSVGGAYQIANNSALKVIDGFTKLKTIGG 298
                 2.455555542466677777777777777777777777777777777777777765 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00012      0.45       8      33 ..     111     136 ..     107     138 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00012
                 -TTS--SEE-TTSSTT-TT--EEE-- CS
       LRR_8   8 LsnNrltslddeaFkglsnLkvLdLs 33 
                 L+ ++lts+d   F gl+nL++L  s
  KKY19979.1 111 LQMSSLTSVDVINFVGLPNLQSLTFS 136
                 66688999999999999999999887 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.8   0.00066       2.4       4      32 ..     109     137 ..     106     186 .. 0.81
   2 ?    0.2   0.1      0.31   1.1e+03       6      20 ..     253     268 ..     243     272 .. 0.69
   3 ?    1.4   0.0      0.13   4.7e+02       9      27 ..     279     295 ..     277     315 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00066
                 -EEE--SS---E-S-HH..H-TT--EEE-.- CS
       LRR_4   4 evLdLsnNqltdiplle..klpnLkeLdLsg 32 
                  +L  s+  lt+++ ++  +lpnL++L+ s+
  KKY19979.1 109 STLQMSS--LTSVDVINfvGLPNLQSLTFSS 137
                 5777888..99999955559*******9743 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.31
                 EE--SS.---E-S-HH CS
       LRR_4   6 LdLsnN.qltdiplle 20 
                 L +++N ++t i+ +e
  KKY19979.1 253 LVFNDNsKITNISIPE 268
                 5566555666666654 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.13
                 -SS.---E-S-HHH-TT--E CS
       LRR_4   9 snN.qltdiplleklpnLke 27 
                 +nN  l+ i++   +++Lk+
  KKY19979.1 279 ANNsALKVIDG---FTKLKT 295
                 67757999999...888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2789.14
//
Query:       KKY19980.1  [L=449]
Description: hypothetical protein UCRPC4_g04303 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.016   15.3   0.2      0.032   14.4   0.2    1.4  1  DALR_1    DALR anticodon binding domain


Domain annotation for each model (and alignments):
>> DALR_1  DALR anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   1.8e-06     0.032      41      96 ..     238     297 ..     211     304 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.8e-06
                 HHHTHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHC.....TSTTSCTHHH.HHHHHH CS
      DALR_1  41 alaqfpevleeaaeelephklaeylyeLaatfhkfYnke.....rvlkeeeeelaaaRLaL 96 
                 ++a +++  +e ++++++h  + y+ +La t ++ Yn+e      v  +eee + + +L+L
  KKY19980.1 238 QMAGWHDQAKEPIKKVQLHAAVIYMNDLARTCTNIYNSErhlkqTVARQEEEIR-MLKLEL 297
                 56667777888999***********************77222224555666655.777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 2800.46
//
Query:       KKY19981.1  [L=410]
Description: putative mannan polymerase ii complex anp1 subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.5e-108  361.5   0.0   3.1e-108  361.2   0.0    1.1  1  Anp1             Anp1
    0.00036   20.4   0.2      0.016   15.0   0.1    2.2  2  Glycos_transf_2  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Anp1  Anp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.2   0.0  3.4e-112  3.1e-108       2     264 .]     102     363 ..     101     363 .. 0.98

  Alignments for each domain:
  == domain 1  score: 361.2 bits;  conditional E-value: 3.4e-112
        Anp1   2 vekydlnklestadaaenkekvLiltplrdaekflpeyfenllkltyphelidLaflvsdtsegdktlealeeelkklqkkkkkkrfrsitilekdfge 100
                 +e++dln ++st++a +nkekvL+ltplrda+++l +yf++l++ltyph+lidLaflv+d+s  d+tl++l++el+++q++++k +f+s ti++kdfg+
  KKY19981.1 102 IESVDLNPIKSTPRALANKEKVLLLTPLRDAAPYLAKYFDLLSELTYPHDLIDLAFLVGDSS--DDTLAVLASELDRIQSRTDKIPFHSATIVQKDFGK 198
                 7899**********************************************************..*******************9*************** PP

        Anp1 101 kisqsesdrhkvevqklRRklmaraRNsLlssaLkpehswvlwlDaDivetpktliedlishdkdvivpnvlrklpdelek.eqpYDlnsWveseeale 198
                  ++++ +++h +++q++RRk+m+raRN+Lls+aL+pehswv+w+D+Div++pk+++ed+++hdkd++vpn++++++++  + e ++D+nsW+ese++l+
  KKY19981.1 199 VVDMNIQEKHGFAAQGPRRKAMGRARNYLLSAALQPEHSWVYWRDVDIVDSPKKILEDFMAHDKDILVPNIWFHRYENGRDvEGKFDYNSWIESEKGLK 297
                 ***************************************************************************9965446***************** PP

        Anp1 199 lakkldeddvivegyaelatkrvhlaklrdengdpeeeveLDgVGgvsilvkaevfrqGamFpaft 264
                 la++ld+d+v++egy e++t r++l+kl d++++++eev+LDg+Ggv+ilvka+v+r+G++Fp+++
  KKY19981.1 298 LAASLDKDTVLAEGYDEFKTGRTYLVKLGDWRNNKDEEVDLDGIGGVNILVKADVHRSGINFPCYP 363
                 ****************************************************************96 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.3   0.0    0.0071        63       5      50 ..     128     174 ..     125     189 .. 0.82
   2 !   15.0   0.1   1.8e-06     0.016      62     132 ..     215     285 ..     197     315 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0071
                      EESS-TTTHHHHHHHHHHH..GGCCEEEEEEEEES-SSCHHHHHGGGC CS
  Glycos_transf_2   5 ptyNeektlletlesllaq..dpypdfeiivvDDgStDetveileela 50 
                      p    +++l++ ++ ll+   +p++ +++ ++   S+D+t ++l +  
       KKY19981.1 128 PLRDAAPYLAKYFD-LLSEltYPHDLIDLAFLVGDSSDDTLAVLASEL 174
                      66677899999999.55555*9*******99999999***99998765 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.8e-06
                      SSS-HHHHHHHHHHHH--SS...EEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS CS
  Glycos_transf_2  62 eenvGkagalnaglraatgd...yilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrv 132
                      +++++ ++a+n  l+aa      ++ + D D + +p   +k++e + ++++d+ ++++ ++++e+++    k+ 
       KKY19981.1 215 PRRKAMGRARNYLLSAALQPehsWVYWRDVDIVDSP---KKILEDFMAHDKDILVPNIWFHRYENGRDVEGKFD 285
                      78999*******************************...7999999999****************999888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 2520.14
//
Query:       KKY19982.1  [L=541]
Description: putative f-box domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-06   25.6   0.1    3.4e-05   23.6   0.1    2.1  1  F-box       F-box domain
  ------ inclusion threshold ------
        8.9    6.3   9.6       0.95    9.4   0.1    3.8  5  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.1   3.8e-09   3.4e-05       3      37 ..     127     161 ..     126     165 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 3.8e-09
                 HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHH CS
       F-box   3 lsrLPsevlrhILerLplsdllalrrVSkgwrili 37 
                 + rL+++++r+IL +L+l+d  +l + +k +r+l+
  KKY19982.1 127 IKRLSPAIWRNILGYLDLTDMSSLIFSCKAFRNLV 161
                 569******************************98 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00011      0.95      10      43 ..     136     167 ..     132     171 .. 0.84
   2 ?   -0.5   0.0      0.14   1.2e+03       3      13 ..     188     198 ..     187     236 .. 0.63
   3 ?   -2.9   1.3      0.72   6.5e+03      28      45 ..     271     287 ..     266     290 .. 0.70
   4 ?   -0.8   0.1      0.16   1.4e+03      17      33 ..     324     340 ..     303     340 .. 0.76
   5 ?   -1.3   0.0      0.24   2.2e+03      17      34 ..     415     432 ..     398     436 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00011
  F-box-like  10 lqIFsyLppsdLlrlalVCrrWrrvaldtplLWr 43 
                   I+ yL+++d+++l   C+ +r+++  t + W+
  KKY19982.1 136 RNILGYLDLTDMSSLIFSCKAFRNLV-GT-RSWS 167
                 57***********************9.34.6676 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.14
  F-box-like   3 rLPdEiLlqIF 13 
                 +LP+ +L+ + 
  KKY19982.1 188 SLPNHLLCFVC 198
                 79****99877 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.72
  F-box-like  28 CrrWrrvaldtplLWrrl 45 
                 +rrW+ v  ++ + ++r 
  KKY19982.1 271 SRRWKHV-ESCWSHYTRY 287
                 899*999.4555555555 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.16
  F-box-like  17 ppsdLlrlalVCrrWrr 33 
                 + +d ++    C++Wr+
  KKY19982.1 324 SREDFWPYFSACSHWRD 340
                 45577777788****96 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 0.24
  F-box-like  17 ppsdLlrlalVCrrWrrv 34 
                 + + L   alV  rW ++
  KKY19982.1 415 DRRNLFKYALVVTRWSDL 432
                 456799999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3638.11
//
Query:       KKY19983.1  [L=799]
Description: putative mfs transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-10   38.5  32.1    1.1e-07   31.1  30.4    2.5  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.088   11.8  11.0     0.0091   15.0   2.9    2.3  2  PUCC      PUCC protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1  30.4   1.2e-11   1.1e-07       4     348 ..     226     573 ..     216     576 .. 0.75
   2 !    7.5  14.3   0.00019       1.7      45     182 ..     487     620 ..     480     642 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 1.2e-11
       MFS_1   4 aaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdr.fGrrrvlllglllfalglllllfa....sslwlllvlrvlqG 96 
                 ++f+ ++a+++l+++  +  +  +l  + +++gl  ++y+ g++++ l lG ++ + +G + +l++g++++a g +l++++    +s+++++++ v+ G
  KKY19983.1 226 LFFILGFAYGFLNILDGQfEIIAELP-QNQTLGL-HAAYYSGYFIGPLTLGQFILKkYGFKATLITGMVVYACG-TLIFWPsavlTSYTAFVLSNVIVG 321
                 45555555555444444444444443.5666665.6778889********7775555*****************.66665324667888********** PP

       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailgpllgg.lla.sslg......Wravfyilaivsllafvlfllllpeepperkrkspkee 187
                  g +++  a++ +i    p e     + l ++  ++G+++ pl++  +l  + l        +++++++a++ +l++v fl +lp ++ + +  +++  
  KKY19983.1 322 TGLSIVEIASNPFILLCGPLEYAEIRLNLSQGVQAIGTVVSPLIAKkYLFkDVLDapslinVQWTYLAIALFDVLVAV-FLYYLPLPEAADEDLEDVAT 419
                 *********************************************9855544444667777***************99.56777888888888888888 PP

       MFS_1 188 ekgtgpaplvpawkallkdpvlw.illialllfffgfsg....lltllplylqevlgls...glllaglllallalvgailallagrlsdrlgrrrrll 278
                      ++++ +  k+  + pv+w  l++++++ + ++ g    + t +  +   +l+ +          +l ++  ++a+++++++ l   + +r++ll
  KKY19983.1 420 ----RRQSVHN-AKIWNRFPVFWvTLVLGVFSQW-CYVGgqesIGTNTQAL-FNTLKPNgtlR---PFDYLTIAHTIFAAGRFFTAMLNFIFMPRWILL 508
                 ....7888888.8999999999986666666666.4444477755555553.44444444442...333356666666677999999999999999999 PP

       MFS_1 279 lallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslg 348
                   + +l++++++ + l       +++++l+l+ ++ + vf++++ ++ + ++ +++ tas+l++ a s g
  KKY19983.1 509 GLYTGLIITTALTLSLKGD----ASVAMLLLVYLFESGVFILVFGITIRGMG-RHTKTASALITAAISGG 573
                 9999999999999999999....44445555555677777777777777776.77788888888776655 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00019
       MFS_1  45 aavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgg 142
                 +a++ ++++ l   f +r++ll  +++++++ ++l+++  +    +++ +l  l+++++f ++  ++ +   + +   a +l++a++s G+ + p++  
  KKY19983.1 487 FAAGRFFTAMLNFIFMPRWILLGLYTGLIIT-TALTLSlKGDA-SVAMLLLVYLFESGVFILVFGITIRGMGR-HTKTASALITAAISGGSPF-PPIQN 581
                 6788889999988999***************.55554334444.79999999999999999999999999988.*****************98.78899 PP

       MFS_1 143 llasslgWravfyilaivsllafvlfllllpeepperkrk 182
                 ++a  +g r++f + +++++++++ f ++l + p ++k +
  KKY19983.1 582 AVANRYGIRYSFCVTTALFAFGAI-FPIYLNVFPQAKKQV 620
                 9999******************99.455554444444443 PP

>> PUCC  PUCC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   2.9     1e-06    0.0091     229     356 ..     239     366 ..     200     400 .. 0.82
   2 ?    1.1   1.1     0.017   1.6e+02     300     327 ..     498     525 ..     458     569 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1e-06
        PUCC 229 iLEpYgGevlgLtvgeTTkLtalfalGtlvGlllaglvlsrglkkarlaslgvllgllsflllilaallenvallvagvlllGlasGlfavaaltlmld 327
                 iL+     + +L+  +T  L a++  G ++G l+ g ++ ++ + + +   g+++ + + l+   +a+l++ +++v++ +++G +  ++ +a+   +l 
  KKY19983.1 239 ILDGQFEIIAELPQNQTLGLHAAYYSGYFIGPLTLGQFILKKYGFKATLITGMVVYACGTLIFWPSAVLTSYTAFVLSNVIVGTGLSIVEIASNPFILL 337
                 3343334577999*******************************************************************************9999999 PP

        PUCC 328 laaeeraglalGaWGaaQaiaaglavllg 356
                   + e a ++l +   +Qai   ++ l++
  KKY19983.1 338 CGPLEYAEIRLNLSQGVQAIGTVVSPLIA 366
                 99999999999999999999887777665 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.017
        PUCC 300 vallvagvlllGlasGlfavaaltlmld 327
                  +++++  +llGl +Gl+ ++altl l+
  KKY19983.1 498 NFIFMPRWILLGLYTGLIITTALTLSLK 525
                 5678888999999999998888887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (799 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.49
# Mc/sec: 4932.63
//
Query:       KKY19984.1  [L=753]
Description: putative formin binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-52  173.3  18.4      9e-15   54.6   0.9    6.8  6  FF              FF domain
      1e-16   60.7  17.3    8.6e-09   35.3   2.5    2.7  2  WW              WW domain
  ------ inclusion threshold ------
        7.7    6.8  11.7        3.4    8.0   2.4    3.1  3  Glyco_hyd_101C  Glycosyl hydrolase 101 beta sandwich domain


Domain annotation for each model (and alignments):
>> FF  FF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.9   1.5e-18     9e-15       1      51 []     146     195 ..     146     195 .. 0.99
   2 !   43.0   0.6   6.4e-15   3.9e-11       1      51 []     213     263 ..     213     263 .. 0.98
   3 !   12.9   0.0   1.6e-05     0.093       5      51 .]     285     335 ..     281     335 .. 0.81
   4 !   51.1   0.0   1.8e-17   1.1e-13       2      50 ..     361     414 ..     360     415 .. 0.97
   5 !    7.6   0.0   0.00069       4.1      10      34 ..     434     459 ..     432     472 .. 0.88
   6 !   11.4   0.4   4.6e-05      0.28      21      50 ..     517     546 ..     505     547 .. 0.88

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 1.5e-18
                 CCHHHHHHHHHHCSSS-TTSSHHHHHHHCTTSCCCHHGTSHHHHHHHHHHH CS
          FF   1 kareaFkeLLkehkeitpkstWseikkilenDpRYlalldkseReelFedy 51 
                 +a++aF++LL+  + + p++tW++++++ ++Dp+Y+al+d+++R+++Fe+y
  KKY19984.1 146 EAEAAFIKLLRRFN-VQPDWTWEQTMRATIKDPQYRALKDPKDRKAAFEKY 195
                 79************.***********************************9 PP

  == domain 2  score: 43.0 bits;  conditional E-value: 6.4e-15
                 CCHHHHHHHHHHCSSS-TTSSHHHHHHHCTTSCCCHHGTSHHHHHHHHHHH CS
          FF   1 kareaFkeLLkehkeitpkstWseikkilenDpRYlalldkseReelFedy 51 
                 k r++F ++L+ h ei+++s+W++ik+ile +  ++  +d+ eR++ Fe+y
  KKY19984.1 213 KLRADFGTMLRRHPEIKHYSRWKTIKPILEGETIFKSTTDDQERRQFFEEY 263
                 5699**********************************************9 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHCSSS-TTSSHHHHHHHCTTSCCC.....HHGTSHHHHHHHHHHH CS
          FF   5 aFkeLLkehkeitpkstWseikkilenDpRY.....lalldkseReelFedy 51 
                 +    L+ +  ++p+++Wse++ ++++++ +      +ll+ks+ +++Fe++
  KKY19984.1 285 DLVSVLNALD-LEPYTRWSEAQGVIQSNDHFssdskFKLLSKSDVLTAFENH 335
                 5566788888.************99999999777554448999999999987 PP

  == domain 4  score: 51.1 bits;  conditional E-value: 1.8e-17
                 CHHHHHHHHHHCS...SS-TTSSHHHHHHHCTTSCCCHHG..TSHHHHHHHHHH CS
          FF   2 areaFkeLLkehk...eitpkstWseikkilenDpRYlal..ldkseReelFed 50 
                 +r+ F++LLke+    +i+++s+W +i++++e+DpRY a+  + +s++++lF+d
  KKY19984.1 361 NRDRFIALLKELRdqgKIKANSKWMNILPLIEEDPRYVAMlgQAGSTPLDLFWD 414
                 79***************************************************9 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.00069
                 HHHCS.SS-TTSSHHHHHHHCTTSCC CS
          FF  10 Lkehk.eitpkstWseikkilenDpR 34 
                 L++++ eitp++t++e++++ + D R
  KKY19984.1 434 LEDKQyEITPMTTYEEFESVMIADRR 459
                 8888889*************999998 PP

  == domain 6  score: 11.4 bits;  conditional E-value: 4.6e-05
                 SHHHHHHHCTTSCCCHHGTSHHHHHHHHHH CS
          FF  21 tWseikkilenDpRYlalldkseReelFed 50 
                 +W++++k+ e+ ++Y+al++++ R+ +Fe+
  KKY19984.1 517 SWEDVRKRVEKTDEYRALENDEPRKIAFEK 546
                 9***************************97 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   2.5   1.4e-12   8.6e-09       4      31 .]      10      36 ..       7      36 .. 0.95
   2 !   30.3   7.0   5.2e-11   3.1e-07       4      31 .]      51      77 ..      49      77 .. 0.96

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.4e-12
                TEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW  4 GWeeqwdpdsGrvYYyNheTgetqWekP 31
                 W+e+++++ G++YYyN+ T+ tqW+kP
  KKY19984.1 10 VWQEARTAE-GKPYYYNTITKLTQWTKP 36
                5********.*****************9 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 5.2e-11
                TEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW  4 GWeeqwdpdsGrvYYyNheTgetqWekP 31
                +W+e+ +++ Gr+Y+yN+eT+ ++We P
  KKY19984.1 51 PWKEYQTAE-GRKYWYNTETKASTWEIP 77
                8********.****************98 PP

>> Glyco_hyd_101C  Glycosyl hydrolase 101 beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.2     0.011        64      77     104 ..      15      42 ..       7      47 .. 0.77
   2 ?    8.0   2.4   0.00056       3.4      67     103 ..      52      82 ..      47      87 .. 0.80
   3 ?   -1.8   0.1      0.59   3.5e+03       6      51 ..     321     367 ..     317     377 .. 0.59

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.011
                     -GGG-EEEEEESS-SEEEEE--HHHHT. CS
  Glyco_hyd_101C  77 kadeeklYhynpkggtstwkLpekwakk 104
                     ++ e k Y+yn+    ++w+ p ++ ++
      KKY19984.1  15 RTAEGKPYYYNTITKLTQWTKPVEMMDA 42 
                     4445599*************99887665 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00056
                     E-B-TTS-B--GGG-EEEEEESS-SEEEEE--HHHHT CS
  Glyco_hyd_101C  67 WnadatgkkekadeeklYhynpkggtstwkLpekwak 103
                     W+      + ++ e + Y+yn++  +stw++pe +++
      KKY19984.1  52 WK------EYQTAEGRKYWYNTETKASTWEIPEVYKN 82 
                     44......445555688****************9987 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.59
                     HHHTTSEEEEEEE........---EEEEETTEE--EEEGGGG-EEEE CS
  Glyco_hyd_101C   6 KflQhyeitkweeeeik.lengekvtvkkaatvtkeeeeayrertit 51 
                     K l ++++++  e++ik le + + + +++++++ ++e ++r+r i+
      KKY19984.1 321 KLLSKSDVLTAFENHIKsLERTFNDAKQQQKATKTRRERQNRDRFIA 367
                     66777777777666776444433333333333445555677777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1699  (0.0947627); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.48
# Mc/sec: 4752.47
//
Query:       KKY19985.1  [L=619]
Description: putative sir2 family histone deacetylase hst4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-28   98.3   0.0    2.4e-27   96.0   0.0    2.1  1  SIR2            Sir2 family
  ------ inclusion threshold ------
       0.09   12.8   0.2       0.96    9.4   0.1    2.5  3  MNE1            Mitochondrial splicing apparatus component
       0.56    8.2   0.0       0.56    8.2   0.0    2.2  2  Totivirus_coat  Totivirus coat protein
        4.1    4.4   9.5        5.3    4.0   9.5    1.1  1  GREB1           Gene regulated by oestrogen in breast cancer


Domain annotation for each model (and alignments):
>> SIR2  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0   5.4e-31   2.4e-27       1     177 []     101     317 ..     101     317 .. 0.82

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 5.4e-31
                 -GGGGGGGT---SSSTTSHHHHSCHHH..HSSHHHHHHHHHHHHH....HHHHHHHHHHCC..TSS--HHHHHHHHHHHTTCEEEEEES-SSS...... CS
        SIR2   1 GAGiStesGipdfRskeGlyaklakee..laspealfskkllvee....vfyniarellae..eaepnaaHkalkklekkgkllrliTQNiDg...... 85 
                 GAGiS+++GipdfRs++Gl++ l++e+   as ++lf+ ++ +++     f n++r+l +   +a+p++ H++l+ l k+++llrl+ QN+Dg      
  KKY19985.1 101 GAGISVSAGIPDFRSSHGLFRTLKDEHklKASGKQLFDASVYKNDssteSFHNMVRSLSNLsaKAHPTPFHRLLARLAKEDRLLRLYSQNVDGiectlp 199
                 9*********************9988763345677888887777777778999999876655699***************************9333333 PP

                 .......HHHHTT-SSEEETTEEEEEEEETTTSBEEECCGGHCHHHCCTT.B-TTTCC.................BEEEEE--CTSB-S..HHHHHHHH CS
        SIR2  86 .......LekkaGskkvvelHGslakakcvkcekkldkeelqeeieaekvpecekcgk.................llkpdvvfFGealp..dklkklie 158
                        L++ka   k ++lHG l+k+ c kc+++ + +   e+ +   +p c+ c++                  l+p++v++ e+ p  d++  +++
  KKY19985.1 200 platqvpLNHKAPWPKTIQLHGGLEKMVCHKCKQISKFD--PEMFTGPVPPLCQACEErdsvrttyagkrshgigRLRPRIVLYNETNPdeDAIGAVVA 296
                 333333344667777******************977663..4556667778999999999**************************9997667877777 PP

                 .HH.HH-SEEEEES--STSTT CS
        SIR2 159 .kv.eeadlllviGtSlkVap 177
                  ++  + d ++v+GtSlk+ p
  KKY19985.1 297 sDLrARPDAVIVVGTSLKIPP 317
                 6551578**********9866 PP

>> MNE1  Mitochondrial splicing apparatus component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.28   1.2e+03      28      62 ..      57      91 ..      52      96 .. 0.82
   2 ?    9.4   0.1   0.00021      0.96      57     103 ..     119     165 ..     110     180 .. 0.79
   3 ?   -2.5   0.0      0.98   4.4e+03      10      32 ..     369     388 ..     363     394 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.28
        MNE1 28 keeeaseslktlfinciLnhlaveknfggvvsale 62
                k e+++ ++++l++n  L +    ++++++++al+
  KKY19985.1 57 KIESVERKTRVLHLNRHLDNDEDDESLDLMLKALR 91
                55678899999999999999999999999999987 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00021
        MNE1  57 vvsaleklvkelnl.qsllnssnligsldnsgfhillksvsnSssakl 103
                 + ++l+  +k +   ++l+++s++++  + ++fh +++s+sn  sak 
  KKY19985.1 119 LFRTLKDEHKLKASgKQLFDASVYKNDSSTESFHNMVRSLSNL-SAKA 165
                 55666666665666789*************************8.6665 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.98
        MNE1  10 lanlevlkefieehlkymkeeea 32 
                  anl+++++ i   +++m+e +a
  KKY19985.1 369 IANLKDWDDNI---VDEMEEITA 388
                 68******999...444444443 PP

>> Totivirus_coat  Totivirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00013      0.56      66     111 ..     134     179 ..     121     192 .. 0.90
   2 ?   -3.6   5.1      0.46   2.1e+03     661     753 ..     459     557 ..     421     563 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00013
  Totivirus_coat  66 avlldcsyptnaalaenfeglirkysnfsatwetvdlaalverlaa 111
                       l+d+s+  n +  e f++++r  sn sa+ +   ++ l+ rla+
      KKY19985.1 134 KQLFDASVYKNDSSTESFHNMVRSLSNLSAKAHPTPFHRLLARLAK 179
                     4689****************************************98 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.46
  Totivirus_coat 661 ergaeqvsaeaetakpervargdpvrltahhaalrapqlpraggasdGgggvppppalgaaagdap....sppss..gsslaasaeapaepeppa 749
                      + + q+  e +++k++ ++  + v  t +    +a+++++++  s+   ++   ++   a++       +p+++  + s+++s+ +p  p+ p+
      KKY19985.1 459 ADVLGQSNKENQQKKSKTKSMLKTVTKTSKSTTKKAQKAKKNPATSQSKITARVSKPNQSAVTVSVksskPPSKDhtTISSSPSPYKPFDPVRPE 553
                     45556666777777777777777888888888888888887766666554433222222222211123434444411334444444444444444 PP

  Totivirus_coat 750 aeqa 753
                     a+ +
      KKY19985.1 554 AHRN 557
                     4444 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   9.5    0.0012       5.3     235     317 ..     459     538 ..     349     595 .. 0.50

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0012
       GREB1 235 aleaaisseaskaaasklakeadtaeekaeqqvaaveskllngkesvkseklaklnqsasarpsvlatlansgPPkkrhkgWs 317
                 a    +s++++++ +sk++   ++ ++ ++++ +++++++  +k+ ++s+++ +   s++++++v+ + ++s+PP k h + s
  KKY19985.1 459 ADVLGQSNKENQQKKSKTK---SMLKTVTKTSKSTTKKAQKAKKNPATSQSKITARVSKPNQSAVTVSVKSSKPPSKDHTTIS 538
                 1111122222222222222...1111111112222222222222223333333344444444444444455555555554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2595  (0.144738); expected 358.6 (0.02)
Passed bias filter:                     1058  (0.0590105); expected 358.6 (0.02)
Passed Vit filter:                       134  (0.00747392); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 3910.22
//
Query:       KKY19986.1  [L=353]
Description: putative taurine catabolism dioxygenase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-16   59.2   0.2    8.8e-16   58.5   0.2    1.4  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family
  ------ inclusion threshold ------
       0.09   11.9   0.0       0.15   11.2   0.0    1.2  1  CsiD      CsiD


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.2   9.8e-20   8.8e-16      93     268 .]     118     280 ..      73     280 .. 0.79

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 9.8e-20
        TauD  93 ayttllwHtDlsylesppgiqlLhcleapatGGetpfvDgraaynaLpeelpellegltavrvyyhyrggglrteqelpavdkhprtghpvvrthp... 188
                  ++ + +H+D+      ++++ L+++    +GG++++++++++yn+L++++p+ l+ l++     + +g               p  g  ++ + +   
  KKY19986.1 118 DTNAQMYHSDAG-----SDVVALMAVSLTGKGGASTVASSWQVYNHLAKTRPDILRILAEKKFRWEANG--------------IPDDGVRLIHWKDekl 197
                 2333347***99.....9*************************************99998888888888..............5555555555555555 PP

        TauD 189 ..vl.tgrkallvn.ppfatrieglgtpeskelldaleelledpeftyrfqwqeGdlvifdNrrvlHgrtaf..degeeRhllrcy 268
                   ++ t+ +  +   p ++tr+ +  t e++e++   + ++e  ++++++++q Gd+  ++N+  +H+r+ f  d+  +Rhllr++
  KKY19986.1 198 flNFsTRTFIGYGElPERDTRY-PALTFEEREAFGGWQWVAE--QYSLETPLQVGDIEWVNNLHHQHARRGFteDPANPRHLLRVW 280
                 543305555555558899***9.8878888888888777776..****************************6655578*****98 PP

>> CsiD  CsiD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.6e-05      0.15     251     290 ..     239     278 ..     236     281 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.6e-05
                 TT-EEE---TT-EEEEETTTEEEEE--B---TT-EEEEEE CS
        CsiD 251 kkklevkvpvGslllinnlfwlhGrdkfeeneelrreLlr 290
                 +  le++++vG++  +nnl + h r  f+e++   r Llr
  KKY19986.1 239 QYSLETPLQVGDIEWVNNLHHQHARRGFTEDPANPRHLLR 278
                 5678999********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2544.68
//
Query:       KKY19987.1  [L=460]
Description: putative major facilitator superfamily transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-28   98.9  30.5    1.1e-23   83.8  12.9    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8  12.9     6e-28   1.1e-23       2     218 ..      68     303 ..      67     311 .. 0.82
   2 !   20.6  12.0   9.9e-09   0.00018      39     172 ..     305     443 ..     301     459 .. 0.79

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 6e-28
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 ++++fl  l+ ++ + a+ + ++edl++  +e++l +t  ++g+ ++++p  ++++ + +  ++ ++ +++a+ +++++ a +    ++++r+l Gl++
  KKY19987.1  68 CFGYFLRLLDTTNMSNAYVSGMKEDLNLYSDEYNLFTTYWTVGYTIGMIPSQYITTYVRPSVWIPAAEVIWAILTFCFA-AVNNAkQIYAMRFLIGLAE 165
                 799**********9999999**************************************6666************44444.455555************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.......Wravfyilaivsllafvlfllllpeepperkrkspkeee... 188
                 + ++ ++++l+  w++++e ++  g++++++ ++ ++   l ++++s l        Wr++f++++++++ +++ ++++ + + p + r+   ++e   
  KKY19987.1 166 SPFYVGVMTLLGNWYTPSELAKRAGIFYSASFAANMFSGYLQAAVYSGLDgvhglpgWRWLFIMCGVITVPGAL-WGFFAVPDSPYNTRVFYLTKEqkg 263
                 **********************************************88889********************988.555555555555555444444477 PP

       MFS_1 189 ...........kgtgpaplvp....awkallkdpvlwillialll 218
                            k              + ++l++p++w+++i  ++
  KKY19987.1 264 iakarmenigrKPFN-----GanlkTFLKILSRPFVWVFVINYII 303
                 777777444444444.....355555********88844444433 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 9.9e-09
       MFS_1  39 tlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGail 136
                 t+ +++ +v++l++G lsdr+  r+ v l+  l+ ++++++l+ as+  + +++  +  +++ a+ p++++++ + f+     ra+ +l+++ +lGa +
  KKY19987.1 305 TGAYAFGLVGTLFWGILSDRLRDRPyVALAITLVNLISVAVLA-ASPTKAAVFSGYILNAATYAYGPIIISYLNETFSAVADERAL-ILGLAQALGATF 401
                 6677889******************999999999999966666.3676667777777777777****************9999999.9999999***** PP

       MFS_1 137 gpllggllasslg.....Wravfyilaivsllafv..lfllll 172
                  + +  l+  + g     +r+ ++ + +++++ +v  l+l +l
  KKY19987.1 402 NAWVPLLIF-NTGtqaplFRVGYITVSVLAAVQAVgvLGLKYL 443
                 ***999999.666578888888888888888877753444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2929.37
//
Query:       KKY19988.1  [L=928]
Description: putative rna polymerase ii mediator complex subunit sin4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-91  307.6   0.0    1.8e-91  307.3   0.0    1.1  1  Med16     Mediator complex subunit 16


Domain annotation for each model (and alignments):
>> Med16  Mediator complex subunit 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.3   0.0   9.9e-96   1.8e-91       5     757 ..     143     912 ..     139     913 .. 0.86

  Alignments for each domain:
  == domain 1  score: 307.3 bits;  conditional E-value: 9.9e-96
       Med16   5 tpkepgasIvafkWLniekpqivnkaaakdqerniykysvnqfrPigvfHPistkealvalrrsGqlkLlyqgenkveykkisvqlknvsesksrellt 103
                 +++++ ++ v++ WLn e+p++ + +  kd++   + y+  +  P+g+ H +    al  +++sG ++Llyq   +  +k +s+ l   +  +s el+t
  KKY19988.1 143 DQENDLNQPVGMYWLNRERPSLWFLPTSKDNN---WVYQLTKKVPYGPHHNL----ALATVTKSGNFRLLYQ-PTSGTWKTTSAMLRRMT--SSGELVT 231
                 7899**********************998854...9****************....****************.8999*************..78***** PP

       Med16 104 kAaiaftndgqilvtayssltnkiqfYkvevnwkrqkldpeqktpkeseklPsltlkhihqktedqcdeeg.............kvleLthldiisatp 189
                 +Aa+++++d+  lv a  +  +k+++++v+++ +++k +     p e   ++ ++++hi + +   +++               ++l+L+hl+ii  ++
  KKY19988.1 232 HAAMGSMKDK-SLVLAMQTYDRKLHVFRVKIEFNQEKGQ-----P-ENVRFANISVEHIRGNVSAGIFKDPnsallgeatlpsySALQLSHLEIIPMSD 323
                 **********.88888888899***********333333.....3.66789************888755557899************************ PP

       Med16 190 ekksg...psIlivysipgqs..........sSiieryqltkeanllhkafselgskksvtqkkskstlrlvddltldskiisitsteldlvvaiyydD 275
                  + ++   p Il+vy+ + +s           +i+ r+ql+  +  lh+ f+e g k +  + k+k+ l ++dd+ +d+ + s++ ++   ++a+++ D
  KKY19988.1 324 IERTEmkaPIILAVYTASLNSmglpnfahgsPTIVARWQLSIAEHKLHPSFDEIGAKTTDNSLKKKIDLLRLDDVPMDQIVASVQLID-AGSIAFVLGD 421
                 *9999999********99999*********99*************************999988999999999**************99.7799****** PP

       Med16 276 gsievvdrnslkvvnetisgdyppktitslfdaGfkfpki.snknvlvlavSpsmtsivyldieGqlklkqleklkflgvsskel...sitsaalaley 370
                 gsi+++d+n++       +++++    ++l +aGf+f+ + +  ++l++a+Sp+ + + +ld +G++  + +++ +++  + ++    + t  +l l +
  KKY19988.1 422 GSIQIYDPNTMIN----LHQQQELGKASTLSRAGFAFQGLgQDPAGLHVALSPNNCVAAVLDNDGKIHCRDMRLWQTSQNEGQQQlglETTMNVLSLSF 516
                 ***********99....68889999999***********999999*********************9999999998777665554677999******** PP

       Med16 371 aiatgsdtssdDilllikteilrveklsekrtrnFiesviselhvsinftldaekesldkLlsspalqklLllqlelGpaqknnevvsdiawiiLnLrs 469
                 a+a+      dDi+ l+      +e+  + +t  F+e+v+++l+   +ft       ld L  + +++k+L+lq++lG  ++ ++v+s+  w  Ln+r+
  KKY19988.1 517 ARACLVANTTDDIVKLV------MEQFPDHQT-LFLETVYQALFTDADFTSG-----LDQLAKKSFIPKVLSLQAALGYQKR-RNVSSALCWTTLNIRH 602
                 *******99******97......666666555.9***************999.....6*********************999.**************** PP

       Med16 470 asfalefvlrsikrqiskpsitrgeliqslignikWlidlvlyllqeLlqlayaknd......vnsklkl.snslvliillskvprlfllkiisalgri 561
                 +s+ l  +l ++k+        +++++  ++ ni+    l +yll++L+++a  ++       + + l++  ++l  +ills+ +r fl++  +al+++
  KKY19988.1 603 VSLHLLLILTYLKQTGGV-EYRDPDVLSAVLHNINYAQALFAYLLNNLFEIA--VPTfaspptSPDSLQAqHTELTSLILLSSWSRFFLRHLSRALRGL 698
                 ************988776.67999***************************5..3333357774444443145788899**********9999999988 PP

       Med16 562 hellkklhkdla.........kllgeskeslnrvfsiln....nspvtldlfekfLreldalvtkeneeaglsdier....EkelLvkgeippeleela 643
                 + + +  +  ++         ++  e+ + +++  s+ +     sp++++  e ++  +++ v +++e+agl++  +    E+e+L  +++p++l  + 
  KKY19988.1 699 TLVPQSGS--AVnpkalpaftRIAREIDPDYTSAGSTPEtgepTSPIKMEAVERLIVGVEKFVMNAYENAGLTTDAQkaavEREMLAHANVPEVLSGVI 795
                 76544332..112234468889999********999876333369**************************9988888******************999 PP

       Med16 644 kvlldrtsisllsevklsalyfydtswLgigedkrfenyvrtllvdii........kktaddsivdslrkeqlakkkkql.RrCtRCgavslvgdplvr 733
                   ++++  +  + ev+  ++  +d++wLg+ + k    + +  ++ i         + + ++++ ++   +  ++++ ++ R C+RCg+vs++  p  r
  KKY19988.1 796 PKVVKEILPITRTEVNHLDVWESDYTWLGLWHRK-GGLVDIHKKRAIKqqgynpsrQSNMSNNTGSTYLVSVKSTTPGKPlRACVRCGEVSEDLVPG-R 892
                 9999***9*********************97654.3333333344455777777664444444444444444455556667************9993.3 PP

       Med16 734 katavkalwtmvflrtCiCggawv 757
                   ++    +    +  C+C g ++
  KKY19988.1 893 GLPI----YFRQQIGRCVCEGNFY 912
                 3332....2233555788877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (928 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 6012.95
//
Query:       KKY19989.1  [L=126]
Description: putative 60s ribosomal protein l35 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-19   67.5   2.1      2e-18   66.1   0.1    2.1  2  Ribosomal_L29  Ribosomal L29 protein


Domain annotation for each model (and alignments):
>> Ribosomal_L29  Ribosomal L29 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.1   1.1e-22     2e-18       3      55 ..      11      64 ..      10      66 .. 0.96
   2 ?    0.9   0.2     0.026   4.7e+02       2      28 ..      84     110 ..      83     123 .. 0.70

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 1.1e-22
                   HHHS-HHHHHHHHHHHHHHHHHHHHHHHHT.SSS-CHHHHHHHHHHHHHHHHHH CS
  Ribosomal_L29  3 lrelsdeeLkeklkelkkeLfnLrfqkatg.qlenpsrirkvRkdIARikTvlr 55
                   l ++s+++Lk++l+++k+eL +Lr+qk++g + +++ ri  +Rk+IARi+Tv++
     KKY19989.1 11 LWSKSKDDLKKQLDDAKTELGQLRVQKVAGgASSKLTRIHDLRKSIARILTVIN 64
                   779***************************9999*******************9 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.026
                    HHHHS-HHHHHHHHHHHHHHHHHHHHH CS
  Ribosomal_L29   2 elrelsdeeLkeklkelkkeLfnLrfq 28 
                    +lr++ +  ++ +l ++ +   + + +
     KKY19989.1  84 DLRAKKTRAIRRQLTKADASRVTEKQK 110
                    677777777777777766655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1490  (0.0831056); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 833.39
//
Query:       KKY19990.1  [L=357]
Description: putative f1f0 atp synthase assembly protein atp10 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-67  225.7   0.0    7.6e-67  225.2   0.0    1.1  1  ATP-synt_10  ATP10 protein


Domain annotation for each model (and alignments):
>> ATP-synt_10  ATP10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.2   0.0   4.3e-71   7.6e-67       7     257 .]      82     336 ..      78     336 .. 0.93

  Alignments for each domain:
  == domain 1  score: 225.2 bits;  conditional E-value: 4.3e-71
  ATP-synt_10   7 skpkeekvkeltrpiGldkppsknent.skkyslgnslkdlfdeektekrrkeLeeelkksyfydlkefrktnGKlFlspksyfkadkalyfPnlvGk 103
                  +k +  ++k+l +piGl+ pp++++nt  + ++++++ +d+++++++ +rr++L+ e++k+yf+d++ +r+ +GK F++++ +fk +k+  fPnl G+
   KKY19990.1  82 AKTETFEPKPLAHPIGLPYPPEAEHNTgLDPRTFRERHRDFTNYDRHLQRRQQLKTEFAKPYFRDWTMLRHSKGKSFIANQLLFKGEKSGWFPNLWGE 179
                  5667888*********************99******************************************************************** PP

  ATP-synt_10 104 tLa........sskeqsledvlkgkvsvVrlfssvvgeelvksyfknkeegkdylkdyeelk.eenkdlQivdinlienwlKallvklslaslrkklp 192
                  tL+        ++   ++++v++g+v+vV +fs  ++e++vk++++++   +   + +e l  ++n  l +  in+++nwl++ +vk ++ +lr+  p
   KKY19990.1 180 TLSkekgqgwlPKLGWNTTQVFQGNVNVVAIFSGLWAEKQVKTFVDDN---S---ELMELLDqNRNGLLRLTRINIEDNWLRRSVVKAFKYRLRSLFP 271
                  ***8888888878888******************************33...3...344444404566789**************************** PP

  ATP-synt_10 193 kerhnkyfivsrkqlpfeireelkinNlytGYvylvDqnlkIRWagsGnateeelellwkcvkgL 257
                  +e++ +yfiv++++ ++e++++++++N+++GYvylvD++++IRWagsG a+++e   l+ + k+L
   KKY19990.1 272 EEEWARYFIVDKSIRSQELKDAIGFLNSKVGYVYLVDSHCRIRWAGSGHANPQEAASLVVGAKRL 336
                  *******************************************************9999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 2165.76
//
Query:       KKY19991.1  [L=172]
Description: putative small secreted protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.56
# Mc/sec: 918.59
//
Query:       KKY19992.1  [L=552]
Description: putative serine carboxypeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.3e-77  259.2   0.0    1.2e-76  258.8   0.0    1.0  1  Peptidase_S10  Serine carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.8   0.0   6.8e-81   1.2e-76       9     414 ..      78     512 ..      71     516 .. 0.86

  Alignments for each domain:
  == domain 1  score: 258.8 bits;  conditional E-value: 6.8e-81
                    SEEEEEEEECS..TTTTEEEEEEEEE-SSGTTTS-EEEEE--TTTB-THHHHHHTTSSEEEETTTTSEEEE-TT-GGGCSEEEEE--STTSTT-EE CS
  Peptidase_S10   9 fkqysGYldve..eeedkslFYwfveseknpeedplvlWLnGGPGCsSldGlleElGPfrvnkdstkkleenpysWnkvanvlfldqPvGvGFSys 102
                     ++y+G l ++  ++e+++lF+wf+ s +  + d++++WLnGGPGCsS++Gll+E+GPf ++  +t+ +++npy+  +++n+l+++qPvGvGF   
     KKY19992.1  78 GESYAGLLPISsaKNETRELFFWFFPSDNPAAGDEITIWLNGGPGCSSFIGLLQENGPFLWQ-PGTYAPVQNPYAFRNLTNMLYVEQPVGVGFTQG 172
                    589*****888668999*********************************************.668***************************999 PP

                    TTSSGS--SHHHHHHHHHHHHHHHHHHSTCGTTSEEEEEEETTHHHHHHHHHHHHHTHCCH--SSTSEEEEEEEESE-SBHHHHHCCHHH...... CS
  Peptidase_S10 103 ntksdvktddeevaedlyefLkkffekfpeyksrdfyitGESYaGhyvPalakeilkknkkekkkkinLkGlligNglideaeqvnsyve...... 192
                      + +   ++ e +++++ f k+f ++f+ +++ ++y+tGESYaG y+P++ + ++ +n+++    ++L+G+li+++++ + +  ++ ++      
     KKY19992.1 173 VPNIT---NEVELTQEFMGFYKNFVNTFKVHNH-KVYLTGESYAGYYIPYIGDGFIAQNDTK---YFDLRGALIIDPIVGDDILQQEVINiplvdy 261
                    99776...********************87766.9************************995...9***************99999999999**99 PP

                    ...HHHHTTSSHHHHHHHHHHHHEET...............HHHHHHHHHHHHHHHHHHHHHHHHHCHCEETTETTSEETTSSEEHHHCTTCCCCT CS
  Peptidase_S10 193 ...fayehgliseeeyeslkkacekk...............eeleqesekcanllekaskvavekenkglnvynileeccklkaelkksstdaqgg 270
                        +y+ + + +  +++ ++ac+++                +++++ ++  ++ +++ +  + + n ++n+y+il  c         +  ++  +
     KKY19992.1 262 wsnVFYFNKTFTA-ALHETQDACNFTsyfekyltfpppgpfPDIASTFTDECDTWDAIYNA-ALEINPCFNPYHILDTC---------PLLWDVLD 346
                    9876666666664.4555799999999999*******987744444444333333333332.566789***********.........44567778 PP

                    TTTTCHHHHHHHHTSHHHHHHTT--TTSSS--SB-H.HH.......HHHCTCCC-SBCHH.HHHHHHHTT-EEEEEEETT-STT-HHHHHHHHHHT CS
  Peptidase_S10 271 edpydesyvekylnkkeVrkalhvnasvkkweecnd.sv.......feqleddisksvee.ileellesglrvliynGdvDlicnvlgteawikkl 357
                       y ++ ++ y+++++V++a+++     +w+ec+d +v       +e ++d++ +++++ +l++++e++ +vli  G+ D+++++ gt   i+++
     KKY19992.1 347 GSNYLPAGATIYFARDDVQEAINAV-VGTNWTECSDgNVfgygtddYEDYSDTSDPPAQNgVLKRVIEHTQNVLITGGNLDFVIPTNGTLLAIQNM 441
                    8889999****************85.669*******8889**9988666666666666543889******************************** PP

                    ECTTECCSCCCEEEE..............TTTCESEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHHH CS
  Peptidase_S10 358 elsgkkefrpwevsp..............kkengqvaGyvkeyenltfltvkgaGHmvPedkpeealqlle 414
                    ++ g ++f++  +                   +  ++G + + ++ltf+tv+ +GH+ P++ p +a++ le
     KKY19992.1 442 TWGGLQGFQNDPRDGeefyvpyhpeynegAMAGAGIVGRWLTERGLTFATVQLSGHELPQYAPGAAYRALE 512
                    **********99977999****99886665556666677777799*********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.50
# Mc/sec: 3336.36
//
Query:       KKY19993.1  [L=734]
Description: putative dna polymerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-34  116.5   0.1    2.3e-33  114.8   0.0    1.9  2  DNA_pol_B_palm   DNA polymerase beta palm
    7.7e-25   86.9   0.0    5.2e-24   84.2   0.0    2.4  2  DNA_pol_B_thumb  DNA polymerase beta thumb
    5.2e-20   71.0   0.1    1.2e-19   69.8   0.1    1.7  1  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
    1.3e-19   70.3   0.1    3.1e-19   69.1   0.1    1.7  1  HHH_8            Helix-hairpin-helix domain
     0.0052   17.0   0.2      0.032   14.5   0.0    2.4  2  NTP_transf_2     Nucleotidyltransferase domain
     0.0078   16.6   0.0       0.02   15.3   0.0    1.7  1  BRCT             BRCA1 C Terminus (BRCT) domain
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.38   10.7   0.0    1.8  1  PTCB-BRCT        twin BRCT domain


Domain annotation for each model (and alignments):
>> DNA_pol_B_palm  DNA polymerase beta palm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.6     4e+03      31      69 ..     431     466 ..     409     498 .. 0.64
   2 !  114.8   0.0   8.9e-37   2.3e-33       1     113 [.     542     654 ..     542     655 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.6
                     HHHHTT-SEESSEEEEEEBTTBSTTSS--HHHHHHHHHH CS
  DNA_pol_B_palm  31 GSYRRgaessGDvDvlitkkdakseskklkklleklvkk 69 
                       YR+  ++   +Dv it+++++ +   l ++ e+l +k
      KKY19993.1 431 RAYRKAISELRKLDVKITRREQAIQ---LPNVGERLADK 466
                     5678888888888888888888774...33444444333 PP

  == domain 2  score: 114.8 bits;  conditional E-value: 8.9e-37
                     -EEHHHHHHHHHHHHHHHHHH-TT-EEEE-HHHHTT-SEESSEEEEEEBTTBSTTSS--HHHHHHHHHHHHHTTSEEEEEE.......E-SSEEE CS
  DNA_pol_B_palm   1 riPreEvealealvkkaakeldpevevivcGSYRRgaessGDvDvlitkkdakseskklkklleklvkklkkkgfltdsLav.....esgeskfm 90 
                     riPr+Ev+++ ++v+k+a++ d +++viv+GSYRRg+ ssGD+D+litk++a+   ++ k+++ +++++lkk++fl++sLa+     ++++sk++
      KKY19993.1 542 RIPRDEVSRHGEIVRKQAQKQDAKMQVIVGGSYRRGSPSSGDIDLLITKEGASL--SDIKRVMGQVIAHLKKSKFLVASLATggnrgSDSGSKWH 634
                     9****************************************************9..469**********************988665555***** PP

                     EEEE---SSSTS-EEEEEEEEE- CS
  DNA_pol_B_palm  91 GvcrlpeeekkelhrRiDlklvp 113
                     G+++lp+ +  +++rRiDl++vp
      KKY19993.1 635 GASCLPD-S--RIWRRIDLLFVP 654
                     *******.4..8*********98 PP

>> DNA_pol_B_thumb  DNA polymerase beta thumb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       0.9   2.3e+03      39      61 ..     136     159 ..      97     164 .. 0.68
   2 !   84.2   0.0     2e-27   5.2e-24       1      69 [.     661     732 ..     661     733 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.9
                      .ETCCCE.EEC-SSHHHHHHHCTS CS
  DNA_pol_B_thumb  39 eddddge.lvevetErdvfelLgl 61 
                      +++++++ l ++ + r++f++L +
       KKY19993.1 136 SRKASKNqLPPIPEHRRIFRGLVF 159
                      333333314466999999999965 PP

  == domain 2  score: 84.2 bits;  conditional E-value: 2e-27
                      HHHHHHS-HHHHHHHHHHHHCTTEEEETTEEE...........ETCCCEEEC-SSHHHHHHHCTS----GGGT CS
  DNA_pol_B_thumb   1 allyfTGsktFnrdlRrlakkkglkLnssglrdek....gkaeddddgelvevetErdvfelLglpyipPeeR 69 
                      al+yfTG++ Fnr+lR+la ++g++Ln++gl+  +      +++ ++g+l+e+++E+++fe+Lg+py+pPe+R
       KKY19993.1 661 ALIYFTGNDIFNRSLRLLASRNGMRLNQHGLYG-DvlrgAGRTKVTEGKLIEGQDEKRIFEILGVPYRPPEHR 732
                      89******************************5.3467777889****************************9 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.1   4.7e-23   1.2e-19       2      49 ..     493     539 ..     492     540 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 4.7e-23
  DNA_pol_lambd_f   2 lFtkvyGVGpktAkkwyakGirtledlrakrakLtreqqiGlkyyeDl 49 
                      lF+++yG G ++A+kw+a+G+rtledlr+ +a+Lt++q++G+++y+D+
       KKY19993.1 493 LFMGIYGAGYAQASKWIAQGHRTLEDLRT-KAELTSNQKVGIEHYDDF 539
                      7****************************.6****************9 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.1   1.2e-22   3.1e-19       1      67 [.     407     471 ..     407     472 .. 0.96

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 1.2e-22
                 HHHHHHHHHHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHHHH CS
       HHH_8   1 NkeiadaLeeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakieeil 67 
                 N+   ++L+e+a++++++ +d++r raYr+A++ +++l+ +it  e+ + +lp++G+++a+kieei+
  KKY19993.1 407 NSRTMEVLQEMATYYDRT-GDSWRTRAYRKAISELRKLDVKITRREQ-AIQLPNVGERLADKIEEIV 471
                 778899************.9************************888.******************8 PP

>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.4   3.5e+03      40      73 ..     316     347 ..     313     363 .. 0.73
   2 !   14.5   0.0   1.2e-05     0.032       5      41 ..     556     591 ..     548     615 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.4
                   ESTTCHHHHHHEHHHHHHHHCCCEEECTTEEEEE CS
  NTP_transf_2  40 lpeevsrekkeegleklaeiikfleellglevdl 73 
                   ++ee  +e ++++ ++l eiik ++++  l++ l
    KKY19993.1 316 YDEE--EEAMTNYHDDLNEIIKDTKKIGHLPIEL 347
                   4555..4467778899999999999988777766 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.2e-05
                   HHHHHHHTTTSEEEEEHHHHCTTSCTTSSEEEEEEES CS
  NTP_transf_2   5 leelkelepvakvvlfGSyarGtalkgSDiDllvvlp 41 
                   ++  ++ + + +v++ GSy+rG      DiDll++ +
    KKY19993.1 556 RKQAQKQDAKMQVIVGGSYRRGSPS-SGDIDLLITKE 591
                   333344444999***********55.48*****9865 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   7.7e-06      0.02       3      52 ..     151     201 ..     149     224 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.7e-06
                 TTTTTTEEEEE.EESTSSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSS CS
        BRCT   3 ellfhgckfvi.tgvldnftrdeleelikehGGkvttevskktthlvvgep 52 
                   +f+g++f++ ++   ++ r    ++++ +G++ ++++++ +th+v++ +
  KKY19993.1 151 RRIFRGLVFYFmPNDNVGMARRMRIQKAEQYGARWSKDWDESITHIVADRD 201
                 579********988888888888899**********************987 PP

>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00015      0.38      19      41 ..     177     199 ..     165     201 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00015
                 HHHHTT-EEESSEETT-SEEEEC CS
   PTCB-BRCT  19 lieamGaeyskdltksvTHLick 41 
                   e+ Ga  skd+ +s+TH ++ 
  KKY19993.1 177 KAEQYGARWSKDWDESITHIVAD 199
                 4689****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.78u 0.38s 00:00:01.16 Elapsed: 00:00:00.57
# Mc/sec: 3897.31
//
Query:       KKY19994.1  [L=163]
Description: putative integral membrane mpv17 pmp22 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-20   72.6   0.4      4e-20   71.8   0.4    1.4  1  Mpv17_PMP22  Mpv17 / PMP22 family


Domain annotation for each model (and alignments):
>> Mpv17_PMP22  Mpv17 / PMP22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.4   2.3e-24     4e-20       2      62 .]      95     155 ..      94     155 .. 0.97

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 2.3e-24
  Mpv17_PMP22   2 llegksleeikeelkekfwptlkanwkvWppaqlinFyfvPlkfRvlfvnvvslgWntyLS 62 
                  + eg     i+ ++++ ++p+lkan+ +Wp++q++nF++vP +f+++fv++++++W++yLS
   KKY19994.1  95 VAEGGGKRAIWRKFQDVYVPALKANYLLWPAVQILNFRVVPIQFQIPFVSTIGIAWTAYLS 155
                  56899999****************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.49
# Mc/sec: 990.76
//
Query:       KKY19995.1  [L=417]
Description: putative phosphoglycerate kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     5e-152  506.2   1.0   5.6e-152  506.1   1.0    1.0  1  PGK       Phosphoglycerate kinase
    0.00025   21.0   0.8      0.021   14.8   0.0    3.0  3  PA        PA domain


Domain annotation for each model (and alignments):
>> PGK  Phosphoglycerate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  506.1   1.0  6.3e-156  5.6e-152       1     378 []       9     406 ..       9     406 .. 0.94

  Alignments for each domain:
  == domain 1  score: 506.1 bits;  conditional E-value: 6.3e-156
                 GGGS--TT-EEEEEE-----EECTTEES--HHHHHHHHHHHHHHHTT-E.EEEEE--S--TT.S-GGG-SHHHHHHHHHHHTT-EEEESSTTSHHHHHH CS
         PGK   1 vkdldlkgkrvlvRvDfNvplkkegkitddtriraalpTikyllekgak.vvllsHlgrpkg.ekeklslkpvaerLsellgkeVkfvedvvgeeveea 97 
                 ++d+dlkgkrvl+RvDfNvpl++++k+t+++ri  alpTiky++e+gak v+l+sHlgrp+g +++k+sl+pv+ +L++llgk+V+f ed+vg+evee+
  KKY19995.1   9 ITDVDLKGKRVLIRVDFNVPLDSDKKVTNNQRIVGALPTIKYAVENGAKaVILMSHLGRPDGkKNSKYSLAPVVPELEKLLGKKVTFTEDCVGKEVEET 107
                 689**********************************************9**********995569********************************* PP

                 HHT-TTT-EEEES-GGGSTTTT...........TT-H......HHHHHHHHT-SEEEE--GGGTTS--TTTTHHHHCSEEEE-HHHHHHHHHHHHHHHS CS
         PGK  98 iaelkegevllLeNvrfykeEe...........knde......elakklasladvyVnDAFgtahrahaStvgiakvlsaaaGllmekElealskvlen 179
                 +++++ gev+lLeN+rf++eEe           k  +      e++k l++l+d+y+nDAFgtahr h+S+vg+    ++a G+l++kEl++++++len
  KKY19995.1 108 VNKATGGEVILLENLRFHAEEEgsskdaegkkvK--AdkaaveEFRKGLTALGDIYINDAFGTAHRGHSSMVGVDLP-QKASGFLVKKELDYFAQALEN 203
                 *********************8666666655542..03355557******************************955.56******************* PP

                 --SSEEEEEEES-HHHCHHHHHHHTTT-SEEEEETCHHHHHHHH.TT-B-TTSS--GGGHHHHHHHHHHHHHHT-EEE--SEEEEESS.SSTTS..EEE CS
         PGK 180 perplvailGGakvsdkikvienLlekvdkliigGgmantFlka.qgleigkslveedklelakellekakkkgvkillpvDvvvake.eaeke.akvv 275
                 p+rp++ailGGakvsdki++i+nLl+kv++lii+Ggma+tF k+  +++ig+sl++e   + ++el+ekakk++vki+lpvD+++a++ +++++ + ++
  KKY19995.1 204 PQRPFLAILGGAKVSDKIQLIDNLLTKVNSLIICGGMAFTFKKTlYNVKIGNSLFDEPGSQKCAELIEKAKKNNVKIVLPVDYITADKfAKDAQtSYAT 302
                 ********************************************9******************************************953333336777 PP

                 ECCG--TT-EEEEE-HHHHHHHHHHHCC-SEEEEES-SS-TTSGCCCHHHHHHHHHHHHHCH.TSEEEEESHHHHHHHHHTT-GGGSSEEESSSHHHHH CS
         PGK 276 eveaipedemalDigpktielfaeaikeaktvvwnGpmGvfeiekfakGTkaiakalaeatk.galsivGGgdsaaaveklgladkvshvStGGgAsLe 373
                 +++ ip+++m+lD+g+k+iel++e+i eakt++wnGp Gvfe+e+fakGTka ++a+ ea + g ++i+GGgd+a++++k+g++dk+shvStGGgAsLe
  KKY19995.1 303 DEDGIPDGWMGLDCGSKSIELYKETIGEAKTILWNGPPGVFEMEPFAKGTKATLDAAVEAASnGKIVIIGGGDTATVAAKYGVEDKLSHVSTGGGASLE 401
                 9999****************************************************999877899********************************** PP

                 HHCTS CS
         PGK 374 lLegk 378
                 lLegk
  KKY19995.1 402 LLEGK 406
                 ****8 PP

>> PA  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.4e-06     0.021      21      61 ..      11      70 ..       3      87 .. 0.77
   2 ?   -2.2   0.0      0.49   4.4e+03      19      32 ..     202     225 ..     185     246 .. 0.66
   3 ?    3.1   0.1     0.011        99      22      46 ..     362     384 ..     343     400 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.4e-06
          PA 21 gvdvkGkivLvqr.tf...................aeKarnAqaaGAagviivndgelgaa 61
                 vd+kGk vL+ r +f                      ++ A ++GA++vi+ +  + ++ 
  KKY19995.1 11 DVDLKGKRVLI-RvDFnvpldsdkkvtnnqrivgaLPTIKYAVENGAKAVILMSHLGRPDG 70
                569********.66778899999999999999999999999************64432222 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.49
          PA  19 fe..........gvdvkGkivLvq 32 
                 ++          g +v+ ki L++
  KKY19995.1 202 ENpqrpflailgGAKVSDKIQLID 225
                 335556667777888999999984 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.011
          PA  22 vdvkGkivLvqrtfaeKarnAqaaG 46 
                    +Gkiv++    ++ a++A++ G
  KKY19995.1 362 AASNGKIVII--GGGDTATVAAKYG 384
                 3457******..5555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 2531.35
//
Query:       KKY19996.1  [L=117]
Description: putative 26 proteasome complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-19   69.5  10.7    3.3e-19   68.7  10.7    1.4  1  DSS1_SEM1  DSS1/SEM1 family


Domain annotation for each model (and alignments):
>> DSS1_SEM1  DSS1/SEM1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7  10.7   1.8e-23   3.3e-19       5      60 .]      43     111 ..      40     111 .. 0.83

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 1.8e-23
                 HHHHHHHTTSTTHHHHH--.--------.............---BESSTTTSCG.GCHHHHHHHHHHHH CS
   DSS1_SEM1   5 klklLeeDDEFEeFpvedw.deeeeeake...........ekklWednWDDddv.eddFskqLreELek 60 
                 + ++LeeDDEFE+Fpvedw +e++++ ++           +++lWe++WDDd+  +++Fsk L+eEL++
  KKY19996.1  43 QPAMLEEDDEFEDFPVEDWpQEDSTDPAAssangtaatsaTTHLWEESWDDDEDgNEEFSKALKEELKQ 111
                 6789***************6444444444789999999999********9876549***********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 896.68
//
Query:       KKY19997.1  [L=769]
Description: putative mitochondrial outer membrane protein iml2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.6e-134  448.5   0.0   3.2e-134  448.3   0.0    1.1  1  DUF3808   Protein of unknown function (DUF3808)
  ------ inclusion threshold ------
      0.016   15.7   3.5          2    9.0   0.2    3.7  4  TPR_19    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> DUF3808  Protein of unknown function (DUF3808)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  448.3   0.0  3.6e-138  3.2e-134       1     477 []       1     607 [.       1     607 [. 0.95

  Alignments for each domain:
  == domain 1  score: 448.3 bits;  conditional E-value: 3.6e-138
     DUF3808   1 lqaldlvLndkfeeaeellkeaskeSslhalgrgviafleAvltfepekmkkAsealkeaeklceksrkkaqkneskqnlssdslyepgleaevcyaea 99 
                 +++++l++nd++++ae+ l+  +++Ss+h+lgrg ++fl+A+ +fe e mk+Ase+l++ae+ ++ + +ka kn   ++++s  +y+ g e++++  ea
  KKY19997.1   1 MEGAALIMNDDVDGAEKRLA--KGQSSFHKLGRGLVTFLRATYGFESEFMKEASERLADAEASASSDHAKAIKNG--GAYES-TIYATGSEYALVTVEA 94 
                 57899**************6..99*****************************************8888888888..55555.8*************** PP

     DUF3808 100 lLlkAlLtflseslvefiKgglklRkaYqiykeilkeikklekkkrskt.................................................. 148
                 +++ A++++l+esl+e+i g++k+Rka+ +++ +l +++k+ +++  k+                                                  
  KKY19997.1  95 QIMAAVVGVLNESLTESIRGFYKIRKAFATLEGLLAMETKYANESLAKQsaeslgsvesspstveigrtpvdlktafsippsntvstatsgsnndrnes 193
                 ***************************************9998888777999*********************************************** PP

     DUF3808 149 ...............................................................eeeeesllseekn...sqaeideflesGvnlgfGil 181
                                                                                ++++++ll+ +++   + +  d f++sG+nl+fGil
  KKY19997.1 194 deeefidaneelpeaptpttyeghleiqhnpnklsnpslldpvevivsskndkenlpetpsmpTSSSHQLLNLDPDssaFSNPLDGFVHSGINLCFGIL 292
                 ************************************************************999667777777666677899****************** PP

     DUF3808 182 qlviSllPpailklLsvvGFsGdreeGLrlLweasksrnlraalallaLlfYytgvvqvldi....d......dg.lkapleeleelLlksrkrfPksa 269
                  l+iS +Ppa++klLs+vGF+Gdre+G+ lLw++sk++n+++a+a+l+Ll++y+++v  +di    +       + +++p  +l +lL   ++r+Pks+
  KKY19997.1 293 LLLISTIPPAFSKLLSIVGFRGDREKGILLLWQSSKFHNIHGAMAALCLLVWYNVLVGSCDIvpdpPedstpqTQvEGYPALRLRNLLSATSQRYPKSQ 391
                 **************************************************************8865155665423789********************* PP

     DUF3808 270 lwllfearieslkgnldeAlelleeiieesqselkqvkhlclfelaltlvylheykeaaesfleLlklskwSkalYtYlaaacllelgre......ekk 362
                 lw l++ar+ s + +l +Al++l+   + s+s+lkq   l +fe++l+++y h+ + ++esfl +++l++wS+a+Y+Y a+a +l+l+r+      +++
  KKY19997.1 392 LWKLERARMASSQRQLSKALDILK---QPSTSSLKQAAGLHMFERSLNAMYAHQHRLCYESFLTCVDLNNWSQAMYYYNAGASHLALYRNlrnsnpKEA 487
                 ************************...578******************************************************************788 PP

     DUF3808 363 aeakekaeelfkevpkllqkkag..kslplekFilrKverfkarkkekkselldavlvspvlEliYvwngfsrmskeeleeesvkkleeka...anke. 455
                 +++++ ae++f+++p++ +kk+   ++lp++ F+ rK++++++r+k+++ + +da++vsp +E+ Y+wng+++ms  +le es++ l ++    +n++ 
  KKY19997.1 488 DKHAKAAESYFQTAPTHTGKKRImaRQLPFDIFVSRKIQKWEQRAKDWNCSFVDAIGVSPTEEMCYLWNGYRKMSYADLE-ESLNILSWSDnleTNPQw 585
                 8888****************99999*******************************************************.999999888788878887 PP

     DUF3808 456 seeeeDdellkkLLkglvlrrl 477
                 +ee+ D+ ++++LL+++++r+l
  KKY19997.1 586 KEESADEGAILALLRAAIYRHL 607
                 78999***************97 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.39   3.5e+03      34      54 ..       5      25 ..       4      31 .. 0.74
   2 ?    9.0   0.2   0.00023         2      12      50 ..     378     416 ..     376     429 .. 0.91
   3 ?   -2.4   0.0       0.8   7.2e+03      11      44 ..     428     462 ..     421     463 .. 0.77
   4 ?    4.9   0.1    0.0041        37      20      50 ..     588     619 ..     581     629 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.39
      TPR_19 34 allalgqldeAealLdalpee 54
                al+ + ++d Ae+ L++ + +
  KKY19997.1  5 ALIMNDDVDGAEKRLAKGQSS 25
                577778888888888877665 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00023
      TPR_19  12 alleqalqedpknaearllLAeallalgqldeAealLda 50 
                 +ll++  q +pk++  +l  A+   ++ ql +A ++L++
  KKY19997.1 378 NLLSATSQRYPKSQLWKLERARMASSQRQLSKALDILKQ 416
                 5889999******************************97 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.8
      TPR_19  11 lalleqal.qedpknaearllLAeallalgqldeA 44 
                 l ++e+ l + ++++ ++ +     ++ l+++ +A
  KKY19997.1 428 LHMFERSLnAMYAHQHRLCYESFLTCVDLNNWSQA 462
                 66777765366888999999888999999999999 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.0041
      TPR_19  20 edpknaearllL.AeallalgqldeAealLda 50 
                 e+++ +++++lL A ++  l   ++A+alL++
  KKY19997.1 588 ESADEGAILALLrAAIYRHLRKHEKAKALLQK 619
                 3444444444448*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (769 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.35s 00:00:01.04 Elapsed: 00:00:00.52
# Mc/sec: 4469.78
//
Query:       KKY19998.1  [L=288]
Description: hypothetical protein UCRPC4_g04321 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.085   12.4   0.1       0.15   11.6   0.1    1.4  1  AHJR-like  REase_AHJR-like


Domain annotation for each model (and alignments):
>> AHJR-like  REase_AHJR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   8.5e-06      0.15      54     106 ..     138     185 ..     130     194 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.5e-06
   AHJR-like  54 eaviiEvksrrssaseqyLqelakaveqhpgWrfelvmtndedatvsikaees 106
                 e++iiE  +     ++++L ++a   e+ +gWrf+l    +ed+ v+++ae++
  KKY19998.1 138 EELIIEFETDV--LKKEQLGAVA---ERAKGWRFLLNAMANEDEDVETQAEKN 185
                 55666655443..4455566555...7889******88666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1862.81
//
Query:       KKY19999.1  [L=285]
Description: putative cell wall [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00017   21.5   3.4    0.00017   21.5   3.4    3.5  3  Mid2       Mid2 like cell wall stress sensor
  ------ inclusion threshold ------
      0.021   13.9  15.2      0.036   13.2  15.2    1.4  1  LAP1C      Lamina-associated polypeptide 1C (LAP1C)
      0.043   12.5  25.5      0.048   12.3  25.5    1.1  1  Hamartin   Hamartin protein
        9.9    3.1  27.4         13    2.8  27.4    1.1  1  GREB1      Gene regulated by oestrogen in breast cancer


Domain annotation for each model (and alignments):
>> Mid2  Mid2 like cell wall stress sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   1.4       1.6   7.3e+03      32      32 ..      58      58 ..      28      81 .. 0.55
   2 ?  -15.6  18.0         4   1.8e+04      19      19 ..     117     117 ..      56     158 .. 0.61
   3 !   21.5   3.4   3.7e-08   0.00017      20      68 ..     179     228 ..     146     239 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.6
        Mid2 32 s 32
                +
  KKY19999.1 58 T 58
                1 PP

  == domain 2  score: -15.6 bits;  conditional E-value: 4
        Mid2  19 y 19 
                  
  KKY19999.1 117 A 117
                 1 PP

  == domain 3  score: 21.5 bits;  conditional E-value: 3.7e-08
        Mid2  20 ttvtytptataessnkskssGLskknrniviGcvvGigvPlll.villll 68 
                 +  + t+ + ++s+++s+ssGLs+  ++ +iG+v Gig  ++l ++ ++ 
  KKY19999.1 179 ASASSTAASLSSSDKSSSSSGLSSSSKKTIIGVVCGIGGAIILgALGVMA 228
                 2233334444455556999*******************999883344444 PP

>> LAP1C  Lamina-associated polypeptide 1C (LAP1C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2  15.2   7.9e-06     0.036      28     188 ..      15     182 ..       2     229 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.9e-06
                 XXXXXXXXXXX................XXXXXXXXXXXXXX..XXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       LAP1C  28 trkplsslkkdhqevetigsesadtedkseseqevnlseepkdetEeedsessqsgeeghklsseslgeekldsedsvsssdktgradaqleessaals 126
                 + + l +l +  ++ ++ g++ a t+ +s+ +  ++  +++++ t +  s+s   + +  +++++ +++++  +++s +   +t+ +++++e+ss++++
  KKY19999.1  15 RYRQLLGLGSSDSTTSAAGNAAAVTSATSSAPASTAAASTTQETTQTSASSSAVAETTSSTTPTTTATSRTSTTQPSKTAVATTTSSSSTTESSSTETP 113
                 445566666777888999999999999999999888888886666555555555555555566677777777778888888888888888888888887 PP

                 XXX.XXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXX...........XXXX..XXXXXXXXXXXX CS
       LAP1C 127 eeasdrtaasqepsaadsqeaqssghskaeqeeqdtlrrtrllv.........peaeshqqetelleeske 188
                  ++    aas  +sa++s+ +  + +++++   q+ +  t + +         + aes +  +     s +
  KKY19999.1 114 SDT--AAAASSTSSASESTTTSATAKTTTQSSTQKPVVVTTVITrtsgsktyvSTAESTNTAATSAAASAS 182
                 776..444444555544444444444444444444444333333121122222222222222222222222 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3  25.5   1.1e-05     0.048     337     504 ..      34     207 ..       6     274 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.1e-05
    Hamartin 337 mttppsspgivptte.lelsssasllsskvsstpeaagkatpetTPakssrkl.ppslsesavvvalpassrksspprkdeks......esskpdlskq 427
                  +   +s ++++  + +  + s+ +++++ s  ++a++++t +tTP ++  +  + +++ s++ va+++ss +++  ++ e++       ss ++ s++
  KKY19999.1  34 NAAAVTSATSSA--PaSTAAASTTQETTQTSASSSAVAETTSSTTPTTTATSRtS-TTQPSKTAVATTTSSSSTTESSSTETPsdtaaaASSTSSASES 129
                 333333333222..21334444445555555555555666666788777664432.2222222222222221122222222220000012222222222 PP

    Hamartin 428 eev.enekeleeslkskssvtlseLsdvikelleaesedsvekeeeeaaisqelseiteekketlvsrggldspfsrt 504
                 +++ +++k+ ++s  +k  v ++ ++   ++++ +++++s +++ ++aa+s    + + + ++++ s  gl s++ +t
  KKY19999.1 130 TTTsATAKTTTQSSTQKPVVVTTVITRTSGSKTYVSTAESTNTAATSAAASASSTAASLSSSDKSSSSSGLSSSSKKT 207
                 222233333333333333333334555555556677777777777777777777666666666777777887776665 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8  27.4    0.0028        13    1098    1254 ..      47     199 ..       5     219 .. 0.32

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.0028
       GREB1 1098 eklsstdnedeelqedgerpksnssavqst.sdsv.aadaaeessktspvkvekseskdavesglsskasakselseasaaaasaseeakspkasvt 1192
                   +++++      +qe +++  ++ssav +t s+++ ++ a++++s+t+p k++ ++++++ +++ ss++++ s +  a+++++sase+++++  +++
  KKY19999.1   47 ASTAAAST----TQETTQT-SASSSAVAETtSSTTpTTTATSRTSTTQPSKTAVATTTSSSSTTESSSTETPSDTAAAASSTSSASESTTTSA-TAK 137 
                  22222222....2222222.2222222222022220222223333333433333333333222222222222222222222222222221111.111 PP

       GREB1 1193 seeeeseeskekekeslsketesqlsleaseqkealdakasskssssssssssassPssscs 1254
                  +++++s+++    ++ +++++ s+++++++e++++++++a+++ ss+++s ss+ + sss+ 
  KKY19999.1  138 TTTQSSTQKPVVVTTVITRTSGSKTYVSTAESTNTAATSAAASASSTAASLSSSDKSSSSSG 199 
                  11122222222222222223333333333333333333222222222211111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2502  (0.13955); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                       245  (0.013665); expected 17.9 (0.001)
Passed Fwd filter:                       113  (0.00630264); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.71u 0.39s 00:00:02.10 Elapsed: 00:00:00.62
# Mc/sec: 1375.77
//
Query:       KKY20000.1  [L=158]
Description: hypothetical protein UCRPC4_g04323 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-17   64.4  18.0    1.3e-17   64.2  18.0    1.1  1  MARVEL    Membrane-associating domain


Domain annotation for each model (and alignments):
>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2  18.0   7.1e-22   1.3e-17       8     143 ..       8     132 ..       3     133 .. 0.94

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 7.1e-22
      MARVEL   8 ilrilqlvfaiiilgliaslia.kldqllgspssalnfavfvavfsflyalfllvlylfknsaftsilwplidlivdalaallwlvafialaaglrdis 105
                  lr++ql++a+ +lgl+a++ + +  +   ++++++nf +f+a ++ ++++ +l l     ++f++ ++ +  l++++la+l+w+++fial + l++  
  KKY20000.1   8 PLRVAQLALAVAVLGLVAYVASwYNGSTSVASPDQVNFLIFAASWTTFLTIPYLTLSP---RYFPQMAHKFGILVAEVLAMLFWFAGFIALGVFLGN-- 101
                 59******************998777788999************************98...5***********************************.. PP

      MARVEL 106 cafesnqysasltvrcgqaqaavafgflavllfaasav 143
                         +++ +++c++a aa+a+g++ +llfaa+++
  KKY20000.1 102 -------LVFCKGSVCNAARAATALGAVEWLLFAATTI 132
                 .......78888***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       851  (0.047465); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1099.00
//
Query:       KKY20001.1  [L=566]
Description: putative amp-binding enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      8e-75  252.0   0.0    1.1e-74  251.6   0.0    1.1  1  AMP-binding  AMP-binding enzyme


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.6   0.0     6e-79   1.1e-74      65     422 ..       5     413 ..       2     414 .. 0.83

  Alignments for each domain:
  == domain 1  score: 251.6 bits;  conditional E-value: 6e-79
                  HHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS.............. CS
  AMP-binding  65 lailkaGavvvplnptltaeelayiledseakvliatvdselleklleaaakleavklvivldadellkeeelkeeeeseekae.............. 148
                  l++++ ++  v +++tl++++ +yi++++e +++    +  ++++ll+++++   ++l+i+++ d+l+  e+  +++ +    +              
   KKY20001.1   5 LGCMSQSLYSVSIYDTLGPDTAQYIINHAELTCVA--ASLPKIPALLKIKSNC--PSLKIIVSLDPLDAGEPTGNSKRDILR-Qmaedvdiqiytlde 97 
                  8**********************************..777779******9965..666777777788877777666654444.1467889999***** PP

                  .........-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTC CS
  AMP-binding 149 .........kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkd 237
                           +  + +++++dd+++i YTSGTTG+PKGV+l+hrn+va+++++++ t ++   ++ ++s+lplahif+  +++ + l  G +++++++d
   KKY20001.1  98 ieaigaalnR--PYNPPTADDVVTINYTSGTTGNPKGVILTHRNAVAAASNASVGTNHG--TEEIICSFLPLAHIFAR-MAEAAGLWGGIQIGYFHGD 190
                  *******743..5558***********************************87554444..47899***********6.*****************99 PP

                  GCCHHHHHHHHHHHHT-SEEEEEHHHHHHH........HHCCCHHCHHHHC..................................CGTT-SEEEEESS CS
  AMP-binding 238 aaldpklllelieklkvtviagvPrvleal........lesgalkaakkak..................................dlsslrlvllgge 293
                  +      ll++++ lk+t++ +vPr+l+++        ++++ +k a +++                                   + +++ +++g++
   KKY20001.1 191 TL----GLLDDLKILKPTLLIVVPRLLNRFgggikaasIDAPGFKGALSRQalstkltnlndpvnptnkhmfydriwsrkvrqqmGMDRIKALVSGAA 284
                  88....257*********************9998877744444442233332333344444444444444555555555555444444677799**** PP

                  -EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSE...EEEEEEETTS-SEBTT-HHHHHHH CS
  AMP-binding 294 plspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgee...GellvrgpgvmkgYlkkpeataea 388
                  pl  ++++f+ra  g  v +gYG+TE  + ++ ++ + d+ ++g  G  lpg+e+ +    ++e+  ++++   Ge+l+rg++++kgYlk++e+ta++
   KKY20001.1 285 PLDGSMQQFLRASWGAVVAQGYGMTESYASTM-VQ-MVDDFSTGNLGGMLPGAEACLQSIPDMEYYVTDKPfprGEILLRGHTIFKGYLKDDEETAKS 380
                  *******************************9.88.56668999****************99***998888999************************ PP

                  EEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 389 fdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                  f+ e++w++TGD+g +d++G++++++Rkk+++kl
   KKY20001.1 381 FT-EDGWFKTGDVGAIDAQGRFKVIDRKKNVLKL 413
                  *9.867**************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3634.67
//
Query:       KKY20002.1  [L=399]
Description: putative o-acetylhomoserinelyase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-130  434.9   0.0   2.1e-130  434.7   0.0    1.0  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    1.6e-10   40.8   0.2    2.6e-10   40.2   0.2    1.3  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
      4e-10   39.4   0.1    2.9e-09   36.6   0.0    2.0  2  Aminotran_1_2    Aminotransferase class I and II
      2e-07   30.3   0.3    3.7e-07   29.4   0.3    1.4  1  Aminotran_5      Aminotransferase class-V
    0.00011   21.6   0.0    0.00017   20.9   0.0    1.4  1  Beta_elim_lyase  Beta-eliminating lyase
     0.0013   17.4   0.1     0.0017   17.0   0.1    1.2  1  Met_gamma_lyase  Methionine gamma-lyase
  ------ inclusion threshold ------
      0.073   13.3   0.0       0.16   12.2   0.0    1.5  1  Asparaginase_C   Glutaminase/Asparaginase C-terminal domain
      0.075   11.8   0.0       0.11   11.3   0.0    1.2  1  GDC-P            Glycine cleavage system P-protein
       0.26   11.9   1.3       0.54   10.8   0.1    2.1  2  MccV             Microcin V bacteriocin


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  434.7   0.0    1e-133  2.1e-130      50     381 ..       1     366 [.       1     367 [. 0.99

  Alignments for each domain:
  == domain 1  score: 434.7 bits;  conditional E-value: 1e-133
                      --HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEE CS
  Cys_Met_Meta_PP  50 gnptrsvleeriaaLeggeaalavssGmaAiaaailallkaGdeivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvyl 143
                      +npt++v+e+r+aaLegg aala+ssG+aA++ ai ++++aGd+i+++++lYggt+++lk +l+++gi++kf+ t+++e++e+ai+++tk++y+
       KKY20002.1   1 MNPTNDVFEKRLAALEGGVAALAMSSGQAAQFIAISTIAHAGDNIISTSNLYGGTYNQLKVTLPRFGIQTKFITTEKPEDFEAAIDDKTKAIYV 94 
                      7********************************************************************************************* PP

                      ESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHT.TTS-GGGGT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHH......... CS
  Cys_Met_Meta_PP 144 EtptnpllkvvDiekiaklakkagvlvvvDntfasp.llqrplklgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflq......... 227
                      Et++np  +v+D+e+iak+a+++gv+v+vDntf ++ +++rp+++gaDivvhSaTK++gGh+++++G+i+++gk++++k++k+++         
       KKY20002.1  95 ETIGNPRFNVPDFEAIAKVAHAKGVPVIVDNTFGAGgYFCRPIDHGADIVVHSATKWIGGHGTTIGGIIIDSGKFDWAKNAKRFPvmndpapgf 188
                      **********************************999*********************************************9999******** PP

                      .......................HHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE-TTSTTSTTHHHHHHHS.SSG CS
  Cys_Met_Meta_PP 228 .......................nalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekhpkvekvyYpglpshpqhelakkql.kga 297
                                             +++G +l+pf a +l+ Gl+TLslR er ++n++++A++Lek+++v++v+Ypgl++hp+h lakk+l +g+
       KKY20002.1 189 hglkfvdtfgpiayiirarvellRDIGTALNPFGAQQLILGLETLSLRAERIASNSITLAKWLEKNEHVTWVSYPGLENHPSHALAKKYLpRGF 282
                      ****************************************************************************************985788 PP

                      -SEEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHHHHHH CS
  Cys_Met_Meta_PP 298 ggvlsFelkseeekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRlsvGiEdvdDliaDlkqal 381
                      ggvl+F +k+++++ +++vd +kl+s+++++G+ ++l+++pas+th++++++e+e++gvtdd+iR+svG E++dD+i D++q++
       KKY20002.1 283 GGVLAFGVKGGAAAGSQIVDGFKLISNLANVGDSKTLAIHPASTTHEQLSAKEQEDSGVTDDMIRISVGTEHIDDIIGDFEQSF 366
                      99********************************************************************************98 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.2   1.3e-13   2.6e-10      22     146 ..       2     126 ..       1     154 [. 0.85

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.3e-13
                      SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHH....HTT-EEEEE-B-TTTSSB-GGGCGGG--TT CS
  DegT_DnrJ_EryC1  22 gpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavl....elgakpvfvDvdpdtynidpaaieaaiter 111
                      +p+++ FEk++aa  g   a+a+ssG aA  +a++ +    gd +I +s+ + +t n       + g ++ f+  +      +p++ eaai  +
       KKY20002.1   2 NPTNDVFEKRLAALEGGVAALAMSSGQAAQFIAISTIAHA-GDNIISTSNLYGGTYNQLKvtlpRFGIQTKFITTE------KPEDFEAAIDDK 88 
                      68999******************************98776.9**************97642222556666666655......8*********** PP

                      EEEEEEB-GGGB--....-HHHHHHHHHHCT-EEEEE-T CS
  DegT_DnrJ_EryC1 112 tkaIlpVhlyGqva....dmdalkaiaakhglkvieDaA 146
                      tkaI  V++ G++     d++a+ ++a+++g++vi D  
       KKY20002.1  89 TKAI-YVETIGNPRfnvpDFEAIAKVAHAKGVPVIVDNT 126
                      ***9.58999986444569*****************965 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.5e-12   2.9e-09      48     249 ..       7     178 ..       2     188 .. 0.82
   2 ?    0.4   0.0      0.14   2.9e+02     222     281 ..     287     348 ..     287     373 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1.5e-12
                    HHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHT....TSEEEEEEBEETTTTEE-HHHHHHHH CS
  Aminotran_1_2  48 eleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrls....ggevvryplyseedfhldlealeeal 139
                     +e++la + g          aa+ ++sG  a   a+ ++++  +gd+i++ +  y+   n l+      g++   +        +   e++e+a+
     KKY20002.1   7 VFEKRLAALEG--------GVAALAMSSGQAAQFIAISTIAH--AGDNIISTSNLYGGTYNQLKVTlprfGIQTKFIT-------TEKPEDFEAAI 85 
                    68899999999........77689999998877777777776..*******998888777776643221155555555.......67999****** PP

                    TTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEE CS
  Aminotran_1_2 140 keapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilg 235
                    ++      ktk i+ve++ NP   v++ e + k+   a+++++ ++vD +++++ +        +  ++++ + ++v s  K  G  G  +G i++
     KKY20002.1  86 DD------KTKAIYVETIGNPRFNVPDFEAIAKV---AHAKGVPVIVDNTFGAGGYF-------CRPIDHGAD-IVVHSATKWIGGHGTTIGGIII 164
                    **......*************9888888888888...*******************8.......788888877.********************** PP

                    EHHHHHHHHHHHHH CS
  Aminotran_1_2 236 naavvsqlrklsrp 249
                    ++   +++++++r+
     KKY20002.1 165 DSGKFDWAKNAKRF 178
                    99888888887776 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.14
                    TTSSGGG-EEEEEEEH.....HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 222 afGlaGeRvGyilgna.....avvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrl 281
                    afG+ G   G+++g++     +++s l+++  + +   + +  + + ls++++++s +++   r+
     KKY20002.1 287 AFGVKG---GAAAGSQivdgfKLISNLANVGDSKTLAIHPASTTHEQLSAKEQEDSGVTDDMIRI 348
                    799999...*****999999999999999999999999999999999999999888777776666 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.3   1.8e-10   3.7e-07      85     210 ..      39     159 ..      22     164 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.8e-10
                  -TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTT CS
  Aminotran_5  85 lkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavgh 182
                   ++gd+i+ t++ + ++ +  +    r g++ k+i+       +++++e+++++ktk++++  + n   ++ ++e+i+k+a++kg+ v+vD + ++g 
   KKY20002.1  39 AHAGDNIISTSNLYGGTYNQLKVTLPRFGIQTKFITT-----EKPEDFEAAIDDKTKAIYVETIGNPRFNVPDFEAIAKVAHAKGVPVIVDNTFGAGG 131
                  4666666666666666665555555555555555555.....3589**************************************************** PP

                  S---HHHHTESEEEEETTTTTSSTT-EE CS
  Aminotran_5 183 ipidvkklgvDflafsghKllgPtGiGv 210
                  +     + g+D+++ s+ K +g  G+++
   KKY20002.1 132 YFCRPIDHGADIVVHSATKWIGGHGTTI 159
                  *************************986 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   8.7e-08   0.00017      32     221 ..       3     174 ..       1     259 [. 0.76

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 8.7e-08
                      HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHC.C--EEEEE-EBTTTBE-HHHHHHHS--S-TT CS
  Beta_elim_lyase  32 ktvnrLedavaelfgkeaalfvpqGtaAnsillkillqrgeevivtepahihfdetgaiael.agvklrdlknkeaGkmdlekleaaikevgah 124
                      +t  ++e+++a+l g  aal + +G aA  i+++++++ g+++i t++  + ++ +  +     g++ + +++++     +e++eaai++    
       KKY20002.1   3 PTNDVFEKRLAALEGGVAALAMSSGQAAQFIAISTIAHAGDNIISTSNLYGGTYNQLKVTLPrFGIQTKFITTEK-----PEDFEAAIDD---- 87 
                      6667889999*********************************98877666666664443333677777777766.....*********9.... PP

                      S-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSS...TT--SS-EEEEE-HH.. CS
  Beta_elim_lyase 125 eekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkK...dllanvGgvlafrddel 215
                        k+k+i++++  n        +   +++a++a+++g+p+++D     n   + g   + +  ++D+v+ s++K   + ++ +Gg+++ + +  
       KKY20002.1  88 --KTKAIYVETIGN----PRFNVPDFEAIAKVAHAKGVPVIVD-----NTFGAGGYFCRPIDHGADIVVHSATKwigGHGTTIGGIIIDSGK-- 168
                      ..699****98777....5899*********************.....55677788889999999999999999776667889999987777.. PP

                      ..HHHH CS
  Beta_elim_lyase 216 edylae 221
                      +d  ++
       KKY20002.1 169 FDWAKN 174
                      333333 PP

>> Met_gamma_lyase  Methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   8.5e-07    0.0017     171     246 ..     100     175 ..      27     187 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8.5e-07
  Met_gamma_lyase 171 kslsieeieeiiklvkeinedvivfvdncyGefveekePtevGadliaGsliknpGGgiaktGGyia..Gkeelveaa 246
                      + +++ + e i k+ +   + v v vdn +G       P++ Gad++  s  k +GG  +++GG i+  Gk ++ ++a
       KKY20002.1 100 PRFNVPDFEAIAKVAH--AKGVPVIVDNTFGAGGYFCRPIDHGADIVVHSATKWIGGHGTTIGGIIIdsGKFDWAKNA 175
                      5566666665555443..4567789****************************************9644777777665 PP

>> Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.9e-05      0.16      12      57 ..      77     123 ..      69     133 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.9e-05
                     -HHHHHHHHHTT--EEEEEEBTTTB--H.HHHHHHHHHHTTT-EEEE CS
  Asparaginase_C  12 dtkvlkallkkgakGvvlegtGvGnlps.allealkeakargivvva 57 
                     +++ ++a+++ + k++ +e+ G+   +  ++   +k+a a+g++v++
      KKY20002.1  77 KPEDFEAAIDDKTKAIYVETIGNPRFNVpDFEAIAKVAHAKGVPVIV 123
                     567799*********************77****************97 PP

>> GDC-P  Glycine cleavage system P-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.5e-05      0.11     146     259 ..      34     150 ..      13     160 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.5e-05
                 HHHH-SSS--EEEEETTS-HHHHHHHHHHHGGGT-EEEE..E-GGG--S-...S-EEEEEEEES.-TTSB----HHHHHHHHHTT-EEEEEE-TTGGGT CS
       GDC-P 146 aaraskkkakkvvvdkkvhpqtlevlktrakglgieive..vdlteekvtdkekevagvlvqyp.nteGriedlkelvekakkkkslvvvaadllaLtl 241
                 a  +  +  ++++  ++++  t + lk     +gi++    ++  e+  +   +++ ++ v    n   ++ d++++++ a+ k + v+v     a + 
  KKY20002.1  34 AISTIAHAGDNIISTSNLYGGTYNQLKVTLPRFGIQTKFitTEKPEDFEAAIDDKTKAIYVETIgNPRFNVPDFEAIAKVAHAKGVPVIVDNTFGAGGY 132
                 4444555567788888899999999999888888875430033223333336778888888754155678***************************** PP

                 B--HHHHT-SEEEEE-TT CS
       GDC-P 242 lkpPgelgaDivvGsaqr 259
                 +  P + gaDivv sa +
  KKY20002.1 133 FCRPIDHGADIVVHSATK 150
                 *************99865 PP

>> MccV  Microcin V bacteriocin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2       3.5   6.9e+03      30      62 ..      28      44 ..      13      64 .. 0.51
   2 ?   10.8   0.1   0.00027      0.54      10      65 ..     124     182 ..     121     192 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.5
        MccV 30 aagtfvaGaiGaivggivagavydvastktpda 62
                +a++f+a ++ a +g                d 
  KKY20002.1 28 QAAQFIAISTIAHAG----------------DN 44
                334444444333333................33 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00027
        MccV  10 dsvsGagddsgrdiakg..igaaagtfvaGaiGaivggiv.agavydvastktpdaals 65 
                 d+  Gag+   r i +g  i  +++t   G+ G+++ggi+  ++ +d+a +++  ++++
  KKY20002.1 124 DNTFGAGGYFCRPIDHGadIVVHSATKWIGGHGTTIGGIIiDSGKFDWAKNAKRFPVMN 182
                 667799999999886652255667766667778877776516789******99988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.50
# Mc/sec: 2392.53
//
Query:       KKY20003.1  [L=202]
Description: putative glycerol-3-phosphate phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-13   49.8   0.0    5.4e-13   49.4   0.0    1.3  1  HAD_2           Haloacid dehalogenase-like hydrolase
    9.4e-07   29.3   0.0    1.4e-06   28.8   0.0    1.3  1  Hydrolase       haloacid dehalogenase-like hydrolase
     0.0042   17.1   0.0     0.0077   16.3   0.0    1.5  1  Hydrolase_like  HAD-hyrolase-like
  ------ inclusion threshold ------
      0.051   13.7   0.0      0.081   13.0   0.0    1.3  1  FtsJ            FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   1.2e-16   5.4e-13      78     177 ..      56     155 ..      21     156 .. 0.90

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 1.2e-16
       HAD_2  78 vkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkk.eeviyvGDsptDieaakkagikv 175
                    ++g++++L++L++ g+  +ivTs++ + +   ++ +++ +  +  v++edv++ KPdpe+++   ++l l++ ++v++v+D p ++ a+k+ag kv
  KKY20003.1  56 AVEIPGARNVLDNLEQSGVPWAIVTSGTGALAGGWIQVMKLARP-KNLVVAEDVSHGKPDPECYLMGRDRLALSStSSVLVVEDAPAGVRAGKAAGFKV 153
                 5679************************************9666.7778899*******************9986256788*****************9 PP

       HAD_2 176 ia 177
                 ++
  KKY20003.1 154 LG 155
                 86 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   3.1e-10   1.4e-06     120     210 .]      59     150 ..      32     150 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 3.1e-10
                 HTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSHHHHHHHHHHHT.STGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 120 kpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdietvakpspegkvaaireLq.gkpeevamVGDgvnDaaalaaAg 210
                  p+a+ ++  L + g++++++t++  + a   ++ +     ++ + ++++ ++kp+pe+++   ++L   + + v++V+D + ++ a++aAg
  KKY20003.1  59 IPGARNVLDNLEQSGVPWAIVTSGTGALAGGWIQVMKLARPKNLVVAEDVSHGKPDPECYLMGRDRLAlSSTSSVLVVEDAPAGVRAGKAAG 150
                 69***********************99999777777733347888888888****************9555999*****************8 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.7e-06    0.0077       3      73 ..     111     178 ..     109     180 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.7e-06
                     STTSSHHHHHHHHHH---.GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEE CS
  Hydrolase_like   3 gKPepemydfalevlgsd.peevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddla 73 
                     gKP pe y + + +l +   + vl++ D   + ++++++aG k +  +t     ++l+   +++++++ dl+
      KKY20003.1 111 GKPDPECYLMGRDRLALSsTSSVLVVEDA-PAGVRAGKAAGFKVLGLATTHD-VQHLK--DAGADWIIRDLR 178
                     9**************76647789999999.99************99988553.33333..467888888876 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.8e-05     0.081      29      99 ..      84     181 ..      78     200 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.8e-05
                 T-TTSHHHHHHCCT.T.-SEEEEEESSSSHHHTTEEEECS-CCCSSHHHHHCHCHHH.............................SSEEEEEE--S-S CS
        FtsJ  29 gaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealse.............................rkvdlvvsDgapd 98 
                 ga  Ggw+qv+     +k  vva D+ +++p p + ++  d +  +    ++  +++                             +++d ++ D+ ++
  KKY20003.1  84 GALAGGWIQVMKLA-RPKNLVVAEDVSHGKPDPECYLMGRDRLALSSTSSVLV-VEDapagvragkaagfkvlglatthdvqhlkdAGADWIIRDLRSF 180
                 8899*******666.4569*******************999988888887773.333466677777777777777777777777777788888887766 PP

                 S CS
        FtsJ  99 v 99 
                 v
  KKY20003.1 181 V 181
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1617.64
//
Query:       KKY20004.1  [L=546]
Description: putative gtp-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-25   88.5  18.0    4.2e-25   87.6  18.0    1.5  1  GN3L_Grn1    GNL3L/Grn1 putative GTPase
    9.4e-16   57.9   1.9    5.2e-12   45.9   0.1    2.8  2  MMR_HSR1     50S ribosome-binding GTPase
    1.1e-08   35.1   0.2    5.9e-08   32.8   0.2    2.0  1  RsgA_GTPase  RsgA GTPase
    2.1e-06   27.4   0.0      0.022   14.3   0.0    2.5  2  GTP_EFTU     Elongation factor Tu GTP binding domain
    0.00016   21.3   0.0     0.0022   17.6   0.0    2.3  2  FeoB_N       Ferrous iron transport protein B
    0.00031   20.9   7.4       0.21   11.6   0.2    3.9  3  Dynamin_N    Dynamin family
    0.00058   18.9   0.1     0.0014   17.7   0.1    1.6  1  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
     0.0052   17.0   0.0       0.85    9.9   0.0    2.5  2  Roc          Ras of Complex, Roc, domain of DAPkinase
  ------ inclusion threshold ------
      0.076   12.4   0.3       0.55    9.6   0.0    2.2  2  TniB         Bacterial TniB protein
       0.09   11.3   1.7       0.12   10.9   1.7    1.3  1  RRN3         RNA polymerase I specific transcription initiati
      0.092   13.1   0.0      0.092   13.1   0.0    3.2  2  AAA_16       AAA ATPase domain
       0.95    9.3  10.5        1.5    8.6  10.5    1.3  1  CNDH2_C      Condensin II complex subunit CAP-H2 or CNDH2, C-
        4.9    6.4  14.6        8.8    5.5  14.6    1.3  1  NOA36        NOA36 protein


Domain annotation for each model (and alignments):
>> GN3L_Grn1  GNL3L/Grn1 putative GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6  18.0   3.1e-28   4.2e-25       1      74 [.      14      87 ..      14      89 .. 0.96

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 3.1e-28
                .HHHHHHHHHHHHHHHHHHHTT-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   GN3L_Grn1  1 rkrykiekkvkehnrKerKeakknptwkskkkkdpgIPnsfPfKeeiLeeieekkrkkeeekekkkeakkeeke 74
                r+r+kiek++++++rK+rK akknp+w+sk kkdpgIPn+fPfK++iL+eieekkr k+ee  k+ke +k+ k+
  KKY20004.1 14 RLRHKIEKRSAAKQRKDRKLAKKNPEWRSKLKKDPGIPNLFPFKDKILAEIEEKKRIKAEEAAKRKETAKTTKN 87
                78******************************************************************988775 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.2   0.00025      0.35      56     114 .]     173     234 ..      64     234 .. 0.80
   2 !   45.9   0.1   3.7e-15   5.2e-12       2      58 ..     304     369 ..     303     399 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00025
                 CSSHHHHHHHHHHHHHHHHC.TSEEEEEEETT......TTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  56 liegaseekglgkaflalee.adlillvvdas......eeklkpldeeleelleeakkplilvlnk 114
                 l++++s+++ + k f+++ e +d+il+v+da+      +   +++++++ +   +  k+lil+lnk
  KKY20004.1 173 LLHTESSRHAFDKIFKQVLEaSDVILYVLDARdplgtrS---QEVERQVMAAA-SGSKRLILILNK 234
                 4565666778889999999956********996654321...33333333332.256889999998 PP

  == domain 2  score: 45.9 bits;  conditional E-value: 3.7e-15
                 EEEEESTTSSHHHHHHHHHT.........S.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCS..S CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg.........e.kaivsdkpgtTrdinegrvklkgkeielvDtpGli..e 58 
                 v+i+G+pNvGKS++inalt          +  a v++++g+T+  ++++++   ++++l+D pG++  +
  KKY20004.1 304 VGIIGYPNVGKSSVINALTShftkrtsqaTtPAPVGSEAGVTTALRTIKLD---SKLTLLDSPGIVfpS 369
                 89*****************66666665442479***************997...79********75331 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.2   4.3e-11   5.9e-08      30     162 ..     209     366 ..     188     371 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 4.3e-11
                  --HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHH.................HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT.....SEEE.E CS
  RsgA_GTPase  30 lslnlldrfLvlaeekgiepvivlnKiDlleeee.................eleelkeelealgyevllvsaktkegleelkellkd.....ktsv.l 104
                  ++++ ++r +++a +   +++++lnKiDl+                     ++++ +++ ++++ + l+ ++++++ l++lk++ ++     ++sv +
   KKY20004.1 209 TRSQEVERQVMAAASGSKRLILILNKIDLVPPPVlkgwlihlrryfptlplRASSPASNAQTFNHKSLTPQSTSSTLLKALKSYAHSsqlsrSISVgI 306
                  567899*************************99999***********999988889999999999999999999999999998765531100444458 PP

                  ECSTTSSHHHHHHHHCTT-----S------------..--SEEEEEETTTEEEESS-SSS CS
  RsgA_GTPase 105 vGqSGvGKStLinallpelelktgevseklgrGkhT..TtavellelaegglliDtPGfr 162
                  +G   vGKS++inal+++ + +t++  +    G     Tta + ++l+++ +l D+PG+ 
   KKY20004.1 307 IGYPNVGKSSVINALTSHFTKRTSQATTPAPVGSEAgvTTALRTIKLDSKLTLLDSPGIV 366
                  88999*******************99999999987444999999**************95 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.6e-05     0.022      31     135 ..     132     238 ..     118     273 .. 0.76
   2 !   10.5   0.1   0.00023      0.32       3      81 ..     301     366 ..     299     378 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.6e-05
                 CHHHHHH..HHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHH..HTTTE. CS
    GTP_EFTU  31 skkgeka..eeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqteevlrlal..kegvp. 124
                 + + e +  e+e+  D ++e++    T +++  +++   ++  + +  +  H+ F k   + l++ D+ + v+da++   ++++ev r++   + g + 
  KKY20004.1 132 AAEYEGQsdEDEESYDEMDEDKDDTTTGSVSLPTTS--VATSSLLHTESSRHA-FDKIFKQVLEASDVILYVLDARDPLGTRSQEVERQVMaaASGSKr 227
                 333333332557778888888888888888888888..888888888888775.99999999**************98777777777765400445557 PP

                 EEEEEESCGST CS
    GTP_EFTU 125 iivfiNKmDrl 135
                 +i+++NK+D +
  KKY20004.1 228 LILILNKIDLV 238
                 *********98 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00023
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSG CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHv 81 
                  + +giig  + GK++++ +L+ +  + ++   +     ++  ++   e g+T    +i+l+      +++l+D+PG v
  KKY20004.1 301 SISVGIIGYPNVGKSSVINALTSHFTKRTS---Q-----ATTPAPVGSEAGVTTALRTIKLD-----SKLTLLDSPGIV 366
                 6789******************66555333...2.....37889*****************9.....99********55 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0       0.2   2.8e+02      73     117 ..     190     237 ..     131     241 .. 0.80
   2 !   17.6   0.0   1.6e-06    0.0022       2      57 ..     303     365 ..     302     385 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.2
                 HHHCTSSSEEEEEEEGGGH..HHHHHHHHHHHHTT...SSEEEEEETHHH CS
      FeoB_N  73 flleeepdvvvnvvdatnl..ernLyLtlqllelg...vpvvlalnmide 117
                 +l  e  dv++ v+da      r+  +  q++      ++++l+ln+id 
  KKY20004.1 190 VL--EASDVILYVLDARDPlgTRSQEVERQVMAAAsgsKRLILILNKIDL 237
                 33..5678999999998753467777777777654333788888888886 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.6e-06
                 EEEEEESTTSSHHHHHHHHHTTSEE..........EEESTTSSSEEEEEEEEETTEEEEEEE---- CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqk..........vgNwpGvtvekkegklklkgkeveivDlPGi 57 
                 +v ++G pnvGk++++nalt   +k          vg  +Gvt   ++ kl+   ++++++D PGi
  KKY20004.1 303 SVGIIGYPNVGKSSVINALTSHFTKrtsqattpapVGSEAGVTTALRTIKLD---SKLTLLDSPGI 365
                 6889***************975322112223333478888888888777777...88889999997 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.7    0.0011       1.5     119     167 ..     182     234 ..      10     235 .. 0.88
   2 !   11.6   0.2   0.00016      0.21       1      35 [.     304     337 ..     304     346 .. 0.84
   3 ?    2.4   0.1      0.11   1.5e+02      95     111 ..     349     365 ..     325     373 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0011
                 S..HHHHHHHSTTEEEEEEEETTS-CCC-..CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N 119 q..elvkeyikkadiilavtsanhdlsns..ealflarevdpkgkrtivvltk 167
                    ++ k+ ++ +d+il+v++a   l +   e+++   ++ + +kr i +l+k
  KKY20004.1 182 AfdKIFKQVLEASDVILYVLDARDPLGTRsqEVERQVMAAASGSKRLILILNK 234
                 2546777777**************88643235666666666777789999998 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00016
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrp 35 
                 + ++G  + GKSSv+naL+ + +  r ++ tT +p
  KKY20004.1 304 VGIIGYPNVGKSSVINALTSH-FTKRTSQATTPAP 337
                 67899999*********9875.5788888888777 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.11
                 EEETTS-SEEEEE---B CS
   Dynamin_N  95 ilsllvkgltlvDlPGl 111
                  +  l+++ltl+D+PG+
  KKY20004.1 349 RTIKLDSKLTLLDSPGI 365
                 55568899********8 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1     1e-06    0.0014      14      59 ..     281     331 ..     269     375 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1e-06
                 HHHHHHHHHGGG-.....S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT-- CS
        MeaB  14 eakellerllaka.....GraqvvGltGvPGaGkstlvealglelrrrGkr 59 
                 ++ +ll++l ++a      r+  vG+ G P +Gks +++al+ ++++r  +
  KKY20004.1 281 TSSTLLKALKSYAhssqlSRSISVGIIGYPNVGKSSVINALTSHFTKRTSQ 331
                 66777777765542222268889**********************999765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.027        38      69     120 .]     183     237 ..     177     237 .. 0.71
   2 !    9.9   0.0   0.00062      0.85       3      37 ..     305     339 ..     303     361 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.027
                 TTTT-HHHHCTSCEEEEEEEGHHH..HCHHHHHHHHHHH.CSSS-EEEEEE-TTT CS
         Roc  69 frslhplylreaalailvydsrss..enlkeWlkelkkv.agkspvilvgnkiDl 120
                 f+++ +  l++++++++v+d+r+   ++ +e  +++ +  +g++ +il+ nkiDl
  KKY20004.1 183 FDKIFKQVLEASDVILYVLDARDPlgTRSQEVERQVMAAaSGSKRLILILNKIDL 237
                 556666667899999*****886433555666666665515677999******95 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00062
                 EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEE CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekstigvdfl 37 
                  ++G  +vGK+s ++ ++++  ++++++t+ + + 
  KKY20004.1 305 GIIGYPNVGKSSVINALTSHFTKRTSQATTPAPVG 339
                 589**************988888888888766554 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.2      0.36   4.9e+02      77     119 ..      44      89 ..      18      91 .. 0.67
   2 ?    9.6   0.0    0.0004      0.55      15      72 ..     281     338 ..     268     347 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.36
        TniB  77 appkpdekrly...aaiLealgaplkararvskleqqvlrllrelk 119
                 + + p   +l+   ++iL++++++ + +a+ +++++++ ++ ++ +
  KKY20004.1  44 LKKDPGIPNLFpfkDKILAEIEEKKRIKAEEAAKRKETAKTTKNSS 89 
                 4455444444422289********9999999999999988777665 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0004
        TniB  15 rakeilerLeeLleypkrkrmpnlllvGdsnnGKtmivekFarlhppekdedaekvpv 72 
                  + ++l+ L++  +  + +r  ++ ++G +n+GK+++++  +++ ++++++ ++  pv
  KKY20004.1 281 TSSTLLKALKSYAHSSQLSRSISVGIIGYPNVGKSSVINALTSHFTKRTSQATTPAPV 338
                 567788999999999999999*****************99988888888777777766 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.7   8.7e-05      0.12     215     295 ..     108     196 ..      63     330 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.7e-05
        RRN3 215 veledlddeedeeleeelee..............deddedddeddeesdlddlssdeeaeedee...kdeeeeslkkikelvekLDailtllfehlek 295
                  +l+d+d+++ +                         ++++ded+e  d  d+++d+  ++  +   ++ +++sl +++   +  D+i + ++e  + 
  KKY20004.1 108 EDLDDMDEDDSN-------PmaallasaqaraaeY--EGQSDEDEESYDEMDEDKDDTTTGSVSlptTSVATSSLLHTESSRHAFDKIFKQVLEASDV 196
                 233333333332.......1445666688877531..333333332222222222222222211111334447899************9999988776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   7.0       3.1   4.3e+03      67     169 ..     119     230 ..       4     232 .. 0.63
   2 ?   13.1   0.0   6.7e-05     0.092       9      58 ..     286     331 ..     283     419 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.1
      AAA_16  67 ipysa.laqalareellrqlldeaesaeleawrekleeala.......avpelagaea.....srllellkrll.allsrderplvlvlDdlqwadeas 151
                  p++a la+a ar   ++   de+e++  e + +k +++++       +v+      +     ++ ++++ +++ + l+  +  ++ vlD  + + + s
  KKY20004.1 119 NPMAAlLASAQARAAEYEGQSDEDEESYDEMDEDKDDTTTGsvslpttSVAT-----SsllhtESSRHAFDKIFkQVLEASDV-ILYVLDARDPLGTRS 211
                 4554444555544444555555555555555555545544466553332222.....13355577788888888766777444.888888888887777 PP

      AAA_16 152 lql.laaLlrlleskpllv 169
                 +++  + +++++ sk+l++
  KKY20004.1 212 QEVeRQVMAAASGSKRLIL 230
                 7775555555555556655 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 6.7e-05
      AAA_16   9 leqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrg 58 
                 l++L+s+ ++   +r+ +v ++G++ vGKss++++l  +++k+    +++
  KKY20004.1 286 LKALKSYAHSSQLSRSISVGIIGYPNVGKSSVINALTSHFTKR----TSQ 331
                 67788888877778888999********************999....332 PP

>> CNDH2_C  Condensin II complex subunit CAP-H2 or CNDH2, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  10.5    0.0011       1.5      16     151 ..       3     149 ..       1     193 [. 0.41

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0011
     CNDH2_C  16 kpfkkgksyrvPkgleeakkrkrkgsiklqeflsalseklqavkeekkaekkg..pafadeleylyqkeakerskarrklareeklkqalleeeeaeee 112
                 kpf k+k    P +l+++ +++   +  +++ +++++++ +  ++ kk +  +    f+d  ++l+  e+k+r ka++ ++r ++ ++++ + + +e+ 
  KKY20004.1   3 KPFSKSKR--TPVRLRHKIEKRSAAK--QRKDRKLAKKNPEWRSKLKKDPGIPnlFPFKD--KILAEIEEKKRIKAEEAAKR-KETAKTTKNSSVEEDG 94 
                 88887765..4544322222222222..33334444444333344444444443345666..55555555555555554433.3333333333322222 PP

     CNDH2_C 113 ee..vdeqeddddneaedgvdddddfgiel................eeeeddlkese 151
                  +  +++  d+dd++ +d  +dd  ++                   ++e+++++ ++
  KKY20004.1  95 VDmgEEDLIDEDDEDLDDMDEDD--SNPMAallasaqaraaeyegqSDEDEESYDEM 149
                 22002222233333333333333..33333345555554555554322222222222 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  14.6    0.0064       8.8     207     294 ..      69     156 ..      56     163 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0064
       NOA36 207 knkaipcpkcgyetqetkdlslstrslkfgrqkqadgsddddddeedsdydaylkalasgddeddegdedddddddeedddeeedded 294
                 + ka    k +  ++ tk+ s+    + +g ++  d++d+d dd ++ d + + + las++ ++ e + + d+d++  d+ +e++d++
  KKY20004.1  69 RIKAEEAAKRKETAKTTKNSSVEEDGVDMGEEDLIDEDDEDLDDMDEDDSNPMAALLASAQARAAEYEGQSDEDEESYDEMDEDKDDT 156
                 45566667777777889***************99888888777777777777777777775555444444444444444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1082  (0.0603492); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.84u 0.37s 00:00:01.21 Elapsed: 00:00:00.55
# Mc/sec: 2973.67
//
Query:       KKY20005.1  [L=381]
Description: putative cbf nf-y family transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-05   25.7   0.0    1.8e-05   24.9   0.0    1.4  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
     0.0026   18.1   0.0     0.0026   18.1   0.0    2.7  3  Histone        Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
      0.047   13.8   0.0      0.088   12.9   0.0    1.4  1  CENP-T_C       Centromere kinetochore component CENP-T histon
        1.3    8.9   0.0        1.3    8.9   0.0    2.4  2  Myc_N          Myc amino-terminal region


Domain annotation for each model (and alignments):
>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0     4e-09   1.8e-05       3      65 .]     125     185 ..     123     185 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 4e-09
                    XXHHHHHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF   3 LPiarvkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65 
                    LP +   ++ +   p +  i+kdA   ++++ + fi++las A +++    rKti++++++ A+
     KKY20005.1 125 LPRTLLSRLARGVlPPNTSISKDALLALTKASSVFISHLASSADSLT---TRKTIAPQDVLNAL 185
                    677777888888889999*************************9997...59********9986 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.3       0.2   8.9e+02      27      55 ..      42      71 ..      20      75 .. 0.54
   2 !   18.1   0.0   5.9e-07    0.0026      58     127 ..     121     184 ..     115     186 .. 0.91
   3 ?   -2.0   0.4      0.99   4.4e+03      19      39 ..     300     320 ..     282     344 .. 0.45

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.2
                T.TS-SSSSB--TTT-XTTHHHHHHHHHHH CS
     Histone 27 r.kasskskkkkkrryrpgtvalkeirkyq 55
                + +a+++  ++k+++ ++g++ ++++++++
  KKY20005.1 42 SkSAKANGTSSKSKDKADGEHGGEKEKEKD 71
                133333444444455555555555544444 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 5.9e-07
                 XSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHH CS
     Histone  58 tdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlA 127
                  dll +++  +R+ r + +    + +is++a+lal++a+  ++ +l++ A  l+    R+Ti p+D+  A
  KKY20005.1 121 QDLLLPRTLLSRLARGVLP---PNTSISKDALLALTKASSVFISHLASSADSLTT---RKTIAPQDVLNA 184
                 5888999999999999999...89***************************9975...99******9766 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.99
                 XXXXXXXHTTS-SSSSB--TT CS
     Histone  19 kkvsakkerkasskskkkkkr 39 
                 ++++ ++++ +++++++  + 
  KKY20005.1 300 EDITMNQDPAEEEDEEEDPED 320
                 333333333333333222222 PP

>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     2e-05     0.088       7      72 ..     124     183 ..     118     187 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2e-05
    CENP-T_C   7 slPaavvkklakrfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvil 72 
                  lP +++++la+ +      ++ ++k+al al+kas  f++ +++  +  +    RKti  +Dv+ 
  KKY20005.1 124 LLPRTLLSRLARGVLP---PNTSISKDALLALTKASSVFISHLASSADSLT---TRKTIAPQDVLN 183
                 4899********9955...599*******************9988777665...7********975 PP

>> Myc_N  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00029       1.3     204     263 ..      27      86 ..       3     121 .. 0.60
   2 ?   -4.3  11.8         3   1.3e+04     205     253 ..     277     321 ..     208     341 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00029
       Myc_N 204 aldppasssssasaassssssdskalssseedvlsesdeeeeeee.eeeeeidVVtvekrr 263
                   dp +s  +s+++++s+s++ + ++s+s++++  e+  e+e e+  +   idV  +++r 
  KKY20005.1  27 LPDPDVS-MMSTTSTTSKSAKANGTSSKSKDKADGEHGGEKEKEKdKDALGIDVCVLDRRM 86 
                 3334444.3333333333334444445555555555555555554055668***9999886 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 3
       Myc_N 205 ldppasssssasaassssssdskalssseedvlsesd..eeeeeeeeeeee 253
                 ++p ++      ++++ +  ++ ++++ eed + ++d  eee+eee+ e+e
  KKY20005.1 277 THPDVT------SNTRPNYDETGDETQPEEDITMNQDpaEEEDEEEDPEDE 321
                 223333......222222222222222222222222211222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       928  (0.0517597); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.37s 00:00:01.10 Elapsed: 00:00:00.54
# Mc/sec: 2113.70
//
Query:       KKY20006.1  [L=710]
Description: putative nuclear localization protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.7e-54  181.8   0.1    1.2e-53  181.2   0.1    1.3  1  CRC_subunit  Chromatin remodelling complex Rsc7/Swp82 subunit
  ------ inclusion threshold ------
       0.51   10.4   7.4        2.3    8.4   7.4    2.2  1  AT_hook      AT hook motif
        9.8    5.0   7.3         16    4.3   7.3    1.3  1  DUF4707      Domain of unknown function (DUF4707)


Domain annotation for each model (and alignments):
>> CRC_subunit  Chromatin remodelling complex Rsc7/Swp82 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.2   0.1     2e-57   1.2e-53       3     135 .]     172     303 ..     170     303 .. 0.98

  Alignments for each domain:
  == domain 1  score: 181.2 bits;  conditional E-value: 2e-57
  CRC_subunit   3 deykltkedpegekkidknGkLlggreyrvktFtleeregkklyvLstdlarllgfrdsylffkknpqllkllatqeekedLiergllpsslksrqik 100
                  dey  ++ d++gekk+d+ G+L+ggr+yr++tFt+++r g+kl++L+t++ar+l++rdsyl+f+kn++l+k++a+qeek+ Li++++lp+s++srqi+
   KKY20006.1 172 DEYLPREFDEAGEKKVDAMGRLQGGRQYRCRTFTVPRR-GEKLFMLATECARVLSYRDSYLLFNKNRSLYKIIANQEEKDALIAHDFLPYSYRSRQIA 268
                  78888899****************************77.*********************************************************** PP

  CRC_subunit 101 lvtarsvFlefGariivkGkrvvDDYyeekakeqg 135
                  +vtars+F++fG+r+iv+G+rv DDY+e+ka++qg
   KKY20006.1 269 IVTARSMFRQFGSRVIVDGRRVRDDYWEAKARKQG 303
                  *********************************97 PP

>> AT_hook  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   7.4   0.00039       2.3       1      11 [.      82      92 ..      82      94 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00039
     AT_hook  1 kRkRGRPrKaa 11
                +RkRGRP+K++
  KKY20006.1 82 PRKRGRPPKTP 92
                7********86 PP

>> DUF4707  Domain of unknown function (DUF4707)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   7.3    0.0027        16     342     394 ..     453     509 ..     449     544 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0027
     DUF4707 342 vsnPpadarplsrknsPsspavrd....llerhqaslgrsqsfshqqpsrshllrtg 394
                 vs+Pp+ a  +s+  s s+p  +       ++ qa+ g+ +sfsh+ p + ++ +t 
  KKY20006.1 453 VSTPPPTAAGVSQDVSVSGPNYQSphlaSADMSQANSGQQHSFSHHAPQFPSTQQTQ 509
                 99***********9888887776422226799**************99887665553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.36s 00:00:01.12 Elapsed: 00:00:00.52
# Mc/sec: 4084.16
//
Query:       KKY20007.1  [L=594]
Description: putative mfs sp sugar:h+ symporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.1e-137  456.6  30.9     1e-136  456.4  30.9    1.0  1  Sugar_tr  Sugar (and other) transporter
    5.6e-20   71.6  34.2    1.5e-10   40.6  15.9    2.1  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.19   11.7   2.0        1.4    9.0   0.4    2.6  2  DUF1422   Protein of unknown function (DUF1422)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  456.4  30.9  1.8e-140    1e-136       3     452 .]      53     511 ..      51     511 .. 0.97

  Alignments for each domain:
  == domain 1  score: 456.4 bits;  conditional E-value: 1.8e-140
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHH..TTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdr..fGRkkslliaavlfvigavlqaaakgk 99 
                 +++++gg++fgYdtg i++fl++ +f+ nfg+ +s+++++ ++v+sgliv+++++G ++G+l+ag+++++  +GRk+s+++ +++f+ig v+q+a+  +
  KKY20007.1  53 VLVSMGGIVFGYDTGQISGFLEMKDFLENFGQLQSDGTYAFTNVRSGLIVGMLSIGTLVGALVAGPIANMplIGRKYSIIVWSIVFSIGLVVQIASI-Y 150
                 5789*********************************9999***************************98779************************.9 PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPryl 198
                   ++++++gR+++G+g+G+ sv+vPmy++E +p ++Rga+v +yql+it+Gil+a+++++g++ ++n+  wri +g+ +++a++l +++lf+PE+Pr+ 
  KKY20007.1 151 PRWYQVMIGRIIAGFGIGALSVIVPMYQGESSPVHVRGAIVCCYQLFITIGILIAYVINFGTEAIDNTASWRIVIGVGWLWAIILGFGILFFPETPRFD 249
                 9************************************************************************************************** PP

                 HHTT-HHHHHHHHHHHHHC....HHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHH CS
    Sugar_tr 199 vekgkeeeakevlaklrge....edadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvt 293
                 + +gk++ a++++ak  g+    + ++ +++e++++le+e+e   + w e+++   + +r+ +g+ +q+fqqltG n+++yy++tif ++gls+s+++ 
  KKY20007.1 250 FRNGKHDTARASIAKFHGVhehhSSVKHQMEEMAEKLEMEREGGDHPWYEIITGPRMAYRTALGMTIQAFQQLTGANYFFYYGTTIFASVGLSNSYVTQ 348
                 ***************88886666888888899999999998888******************************************************* PP

                 HHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH...HHHHTTSS.......CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHH CS
    Sugar_tr 294 iivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg.ivalllvaks....kaasivaivfialfialfalgwgpvpwvlvsElfpqsvRska 387
                 ii+g+vn+ +tf ++++v++fGRR++l++Ga+ +++cf++++   a+ l++++    ++ ++v+ivf +lfia fa +wgp+ w + +E++p + Rs +
  KKY20007.1 349 IILGAVNTGTTFPGLYFVEKFGRRKCLVTGALWQFMCFMVFAsLGAFKLTNADgsynQSTGYVMIVFACLFIASFASTWGPMAWAVTAEIYPGRYRSQC 447
                 ******************************************9888888888889******************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 388 laiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 ++++ a+nw++nfl ++++p+it+ i+ +++++vfag++++++i+v+ff+pe +g+tlee+++++
  KKY20007.1 448 ISLCSASNWMFNFLLAFFTPFITQDIQ-FKYGYVFAGCNLAAAIVVYFFLPESAGKTLEEVDTMY 511
                 ***************************.**********************************996 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6  15.9   2.5e-14   1.5e-10       8     242 ..      62     344 ..      44     363 .. 0.66
   2 !   35.7  12.1   7.4e-13   4.4e-09      48     185 ..     358     507 ..     349     533 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 2.5e-14
       MFS_1   8 salarsilgpalpl.alaedlg.........ispseigllltlyalgaavaslplGrlsd..rfGrrrvlllglllfalg.lllllfa..sslwlllvl 91 
                  +++ + ++ +l +    e++g         ++    gl++++ ++g++v++l++G++++   +Gr+  +++  ++f++g ++ ++ +  + ++ ++++
  KKY20007.1  62 FGYDTGQISGFLEMkDFLENFGqlqsdgtyaFTNVRSGLIVGMLSIGTLVGALVAGPIANmpLIGRKYSIIVWSIVFSIGlVVQIA-SiyPRWYQVMIG 159
                 44444445555555555555555555555446666699********************997779****555555556666244444.2435555***** PP

       MFS_1  92 rvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgg...llasslgWravfyilaivsllafvlfllllpeepperkrkspkee 187
                 r+++G+g gal  ++  +  + +p   rg  + ++++++ +G+++++++     ++   ++Wr v  +  + +++++  ++l++pe+p+   r+ + + 
  KKY20007.1 160 RIIAGFGIGALSVIVPMYQGESSPVHVRGAIVCCYQLFITIGILIAYVINFgteAIDNTASWRIVIGVGWLWAIILGF-GILFFPETPRFDFRNGKHDT 257
                 **********************************************88743344555666799985555555555544.34889888888777777777 PP

       MFS_1 188 e................kgtgpaplvp...................awkallkdpvlw.....illialllfffgfsglltllplylqevlgls.g 242
                                  +        +                   +w ++ + p +       + i ++   +g ++++++ +++     gls +
  KKY20007.1 258 ArasiakfhgvhehhssV--------KhqmeemaeklemereggdhPWYEIITGPRMAyrtalGMTIQAFQQLTGANYFFYYGTTI-FASVGLSnS 344
                 455555555555554441........044444555666777888888888999998832334445555555555555577777664.556666642 PP

  == domain 2  score: 35.7 bits;  conditional E-value: 7.4e-13
       MFS_1  48 aslplGrlsdrfGrrrvlllglllfalglllll....f....a.......sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagf 130
                 +++p+ +++++fGrr++l++g+l+ + ++++++    f    a       +++  +++++ ++++++ ++  p++ a++a+++p++ r++ i+l sa++
  KKY20007.1 358 TTFPGLYFVEKFGRRKCLVTGALWQFMCFMVFAslgaFkltnAdgsynqsTGYVmIVFACLFIASFA-STWGPMAWAVTAEIYPGRYRSQCISLCSASN 455
                 57889999********************444444443355542555655455774455555555555.999**************************** PP

       MFS_1 131 slGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspk 185
                  +   l + + +++++ + + + +++++  ++ a+v   ++++ ++++ k+ +++
  KKY20007.1 456 WMFNFLLAFFTPFITQDIQFKYGYVFAGCNLAAAIV---VYFFLPESAGKTLEEV 507
                 ***********************9999999999888...6777777666665554 PP

>> DUF1422  Protein of unknown function (DUF1422)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.08   4.8e+02      61      76 ..      40      55 ..      33      64 .. 0.86
   2 ?    9.0   0.4   0.00023       1.4       8      58 ..     108     158 ..     104     176 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.08
     DUF1422 61 glPllalacfllGvlg 76
                 +P l++ +f++Gvl+
  KKY20007.1 40 PMPFLTARTFFMGVLV 55
                5899**********96 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00023
     DUF1422   8 ktllLaliaGlslngtlsalfsslvpfsifplialvlavyclyqrYlnksl 58 
                 +tl+ al+aG  +n  l     s++ +si   i lv+ +  +y r+ + ++
  KKY20007.1 108 GTLVGALVAGPIANMPLIGRKYSIIVWSIVFSIGLVVQIASIYPRWYQVMI 158
                 79*****************************************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.51
# Mc/sec: 3503.87
//
Query:       KKY20008.1  [L=776]
Description: putative copper-transporting atpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-44  149.4   5.4    7.5e-44  149.4   5.4    2.3  4  E1-E2_ATPase  E1-E2 ATPase
    6.1e-25   88.7   0.0      1e-24   88.0   0.0    1.4  1  Hydrolase     haloacid dehalogenase-like hydrolase
    7.8e-07   29.1   0.3     0.0015   18.4   0.1    2.5  2  Hydrolase_3   haloacid dehalogenase-like hydrolase
     0.0071   16.8   0.0      0.016   15.6   0.0    1.6  1  HAD           haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.12   12.3   3.2      0.099   12.6   0.9    2.0  2  TMCCDC2       Transmembrane and coiled-coil domain-containing
        8.7    6.2  14.4        0.6    9.9   0.6    3.4  3  Mid2          Mid2 like cell wall stress sensor


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.5       2.5   7.4e+03     132     158 ..     133     164 ..     118     172 .. 0.48
   2 ?   -2.9   0.5       1.4   4.2e+03     120     145 ..     200     225 ..     185     239 .. 0.49
   3 !  149.4   5.4   2.5e-47   7.5e-44       2     180 ..     257     446 ..     256     447 .. 0.95
   4 ?   -4.0   0.7         3   8.9e+03     111     148 ..     716     759 ..     712     769 .. 0.51

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.5
                   HHHHS-STTTSSTT.....HHHHHHHHHHHHH CS
  E1-E2_ATPase 132 lvflialllgksla.....eallralallvaa 158
                    v+l+ ++l   +a     e+++ +++l++++
    KKY20008.1 133 SVCLTVPVLVLAWAplperEIIYGSVSLVMST 164
                   11111111111111122236666666666655 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.4
                   HHHHHHHHHHHHHHHHS-STTTSSTT CS
  E1-E2_ATPase 120 kvlvpvvlliallvflialllgksla 145
                   + +++ v+++all++   l++g++  
    KKY20008.1 200 AAYIFSVVAFALLTAGKPLSTGEFFE 225
                   23334444444444444444444443 PP

  == domain 3  score: 149.4 bits;  conditional E-value: 2.5e-47
                   SS--EEEEE..-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTT CS
  E1-E2_ATPase   2 llpptakvi..rdgteeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgk 96 
                   l+++ta ++   d+ ++eid++ l++GD+  l ++ +v++Dg +++g++e+des++TGE   v+k+kg+ v++G+v+ sg++ ++ t++  d+++++
    KKY20008.1 257 LQQSTAILVesDDTFTREIDVRLLQYGDVFRLMPEAKVVTDGTVISGNSEIDESMITGEPSLVTKSKGSPVIAGSVNGSGTLDVRLTRLCDDNTIST 353
                   667777777655667889******************************************************************************* PP

                   TSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT.........HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase  97 iarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla.........eallralallvaaiPcaLplavplalalgarrlak 180
                   ia++v +ak +k+++qk++d +++++vpvv+li++++f+i++ +g  ++         +a++ a+a+l++++Pca++l+vp++++++ + +a+
    KKY20008.1 354 IANMVDKAKLSKPKTQKIADCVAGYFVPVVILITIITFVIWIAVGIAIQkrssldatlQAVTYAIAVLIISCPCAIGLTVPMVIVIAGGIAAD 446
                   *********************************************999999**********************************99888776 PP

  == domain 4  score: -4.0 bits;  conditional E-value: 3
                   HHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT......HHH CS
  E1-E2_ATPase 111 lqkkldklgkvlvpvvlliallvflialllgksla......eal 148
                   l +++ +++  ++   ++i+l++ ++  ++  +++       ++
    KKY20008.1 716 LRRIMFNFAWSFAYNLFAILLAAGAFVNFRVPPAFagvgeiVSV 759
                   55566666666666666666666665555555555444322222 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.0   3.3e-28     1e-24       2     210 .]     464     677 ..     463     677 .. 0.83

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 3.3e-28
                 SEEEEESBTTTBCHHHHHHH......HHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHH...HHHHHHHHHETTTE........HHHHTHHHHHHHHHCH CS
                 xxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx........xxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsved......vivsaalalaaaletgsehpigkalvaaakar...sgaltgfatfigrg........ayaigkpewltaldip 83 
                 + v+fDk+GTLt g+ sv++      +++ + +++   l  g +hp  +a+++  + +   + a+ ++  ++g+g        ++  g+  w++a    
  KKY20008.1 464 THVIFDKTGTLTMGRLSVREstyvdgLTEDI-KPILLGLVSGIKHPVSRAIAEHLQSLgvsPAAVIDVKSLPGKGvfgnwngnEIRAGNASWTQAT--- 558
                 579************7777733323244444.5666666666****************9977777*******************************... PP

                 HHHHHHHHHHHHHCHHHHHH..TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  84 pdlgaaigsaqsqgrtvall..qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdietvakpspegkv 180
                      + ++  + g tv     ++ ++a+++++d+  ++peaa+++ +L+a+g+ v +++gd+   ++++a+ lG         ++ ++ +  sp +k+
  KKY20008.1 559 --SSLELQQFLTSGSTVLCFtiNNTLRAIYALQDT--LRPEAAHVISTLHAKGVSVSIVSGDETGAVQKTAESLG--------IASSNALSCCSPADKQ 645
                 ..3333344444444433337799***********..**************************************........4555559999****** PP

                 HHHHHHT...STGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 181 aaireLq...gkpeevamVGDgvnDaaalaaAg 210
                 a i+ L+   ++p  +++ GDg nDa ala A+
  KKY20008.1 646 AYIQTLKtssANP-TIIFLGDGTNDAIALASAD 677
                 ******9887555.6****************98 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00062       1.9      15      55 ..     591     631 ..     579     640 .. 0.88
   2 !   18.4   0.1   4.9e-07    0.0015     205     251 ..     659     705 ..     642     708 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00062
                  ---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC CS
  Hydrolase_3  15 kisektkeaikklkekgikvviATGRslravlpvleelgld 55 
                  ++ ++++++i  l++kg+ v i +G ++ av++ +e+lg+ 
   KKY20008.1 591 TLRPEAAHVISTLHAKGVSVSIVSGDETGAVQKTAESLGIA 631
                  5678999*******************************987 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 4.9e-07
                  GEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHH CS
  Hydrolase_3 205 eviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGV 251
                   +i  GDg ND   L  a++gv m  +++ + +aAd v  + +  GV
   KKY20008.1 659 TIIFLGDGTNDAIALASADIGVHMSEGTDVARSAADVVLMHPDLRGV 705
                  47889*********************************998887777 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.2e-06     0.016      83     183 ..     589     669 ..     577     674 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.2e-06
         HAD  83 pklldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDsp 181
                 + +l+p+a  +++  +a+G+ v +vSg     v+ +++ lg    +a+                +++  ++k a ++  l+  +++   +++++ GD+ 
  KKY20008.1 589 QDTLRPEAAHVISTLHAKGVSVSIVSGDETGAVQKTAESLG----IAS----------S--NALSCCSPADKQAYIQT-LKTSSAN---PTIIFLGDGT 667
                 33688********999*************************....999..........3..35667777666666666.3333333...3477888888 PP

         HAD 182 sD 183
                 +D
  KKY20008.1 668 ND 669
                 88 PP

>> TMCCDC2  Transmembrane and coiled-coil domain-containing protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.84   2.5e+03      28      62 ..     109     143 ..     103     169 .. 0.83
   2 ?   12.6   0.9   3.3e-05     0.099       5      77 ..     346     417 ..     342     424 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.84
     TMCCDC2  28 pqqtnlglldnlaptvqvilkiiflillaiGlyal 62 
                 p++++  ++     ++qv l + + ++l++ ++ l
  KKY20008.1 109 PNRPDPSISAANKHVWQVGLATLVSVCLTVPVLVL 143
                 5566666777778899******9999999988776 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.3e-05
     TMCCDC2   5 ldslslstiwnwlqatllgetsvpqqtnlglldnlaptvqvilkiiflillaiGlyalwkrs.irsiqkillfv 77 
                  d  ++sti n + ++ l++  ++q+    +  ++ p+v +i  i+f+i +a+G+ a+ krs + +  +++ ++
  KKY20008.1 346 CDDNTISTIANMVDKAKLSK-PKTQKIADCVAGYFVPVVILITIITFVIWIAVGI-AIQKRSsLDATLQAVTYA 417
                 6777899***********99.88999999*************************8.666665155544455444 PP

>> Mid2  Mid2 like cell wall stress sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.6    0.0002       0.6      34      73 ..     356     395 ..     325     406 .. 0.77
   2 ?   -2.2   4.6       1.1   3.3e+03      51      65 ..     426     440 ..     419     443 .. 0.83
   3 ?    3.0   0.0     0.027        80      14      61 ..     466     510 ..     454     525 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0002
        Mid2  34 nkskssGLskknrniviGcvvGigvPlllvillllyifCi 73 
                 n  ++  Lsk   + +  cv G  vP++++i+++ +++ i
  KKY20008.1 356 NMVDKAKLSKPKTQKIADCVAGYFVPVVILITIITFVIWI 395
                 44667789999999999*****************998765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.1
        Mid2  51 GcvvGigvPlllvil 65 
                  c +G++vP+++vi+
  KKY20008.1 426 PCAIGLTVPMVIVIA 440
                 589**********96 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.027
        Mid2  14 iLsdlyttvtytptataessnkskssGLskknrniviGcvvGigvPll 61 
                 ++ d+  t+t+   +  es   +   GL++  + i++G v Gi  P+ 
  KKY20008.1 466 VIFDKTGTLTMGRLSVRES---TYVDGLTEDIKPILLGLVSGIKHPVS 510
                 5556666666655555544...5689*****************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       898  (0.0500865); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 4834.84
//
Query:       KKY20009.1  [L=455]
Description: putative chromate transport protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-49  166.8  27.8      2e-28   99.5  10.2    2.6  3  Chromate_transp  Chromate transporter


Domain annotation for each model (and alignments):
>> Chromate_transp  Chromate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5  10.2   1.1e-32     2e-28       8     155 ..      34     194 ..      27     197 .. 0.87
   2 ?   -2.0   0.3       0.2   3.5e+03      75      91 ..     309     325 ..     298     331 .. 0.66
   3 !   78.0   4.0   4.6e-26   8.3e-22       2      97 ..     337     437 ..     336     454 .. 0.86

  Alignments for each domain:
  == domain 1  score: 99.5 bits;  conditional E-value: 1.1e-32
  Chromate_transp   8 lkiGllifGGgyavipllreevverkgwlteeefldglalaqalPGPiavnlatfvGylil.gvlGaliatlgfflPsfllilllaplleklrk 100
                      + +G+++fGG++++ ++l++++ve+++w++e+ +++++al+qalPGP ++++ +++ yl + g+l+++ a+l+++lP+++ +++l+  ++++ +
       KKY20009.1  34 WHLGFTAFGGPPVHFQILHKKFVEKYKWVDEQMYQEIFALSQALPGPASTKMLFCMNYL-HgGLLAGIGAFLLWCLPGAIGMYALSLGVSRIGD 126
                      689********************************************************.66*****************************977 PP

  Chromate_transp 101 ..nplvkaaleglnaavvglilaaalslakk..........iallaflllllfkvs..pilvillaall 155
                         p+v a+l+glnaa+vg+i+ aa++la+k          ++l ++  +l++ ++  p +++++a+++
       KKY20009.1 127 tlPPPVYALLSGLNAATVGIIALAAVQLAQKaitdkvsralVFLDGVTGMLYTALWffP-VLMAGAGVV 194
                      76688*********************999999999999988445555555555555324.466666665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.2
  Chromate_transp  75 iatlgfflPsfllilll 91 
                      ++++g fl sf+ i+++
       KKY20009.1 309 LCLIGAFLISFIAIMVI 325
                      45666777777777665 PP

  == domain 3  score: 78.0 bits;  conditional E-value: 4.6e-26
  Chromate_transp   2 elflfflkiGllifGGgyavipllreevverkgwlteeefldglalaqalPGPiavnlatfvGyl.....il.gvlGaliatlgfflPsfllil 89 
                      +lf + + +G++ifGGg++vipllre++v  +gw+++++fl glal q++PGP++ n+a+++G+l      l   lGali ++g+f+P+++ +l
       KKY20009.1 337 SLFANLYLAGTIIFGGGPVVIPLLREYIVA-EGWVSPRDFLLGLALIQSFPGPNF-NFAVYLGSLatagtSLpSSLGALIGFVGIFTPAIIDLL 428
                      69***************************9.67*********************9.*********999885557789************99666 PP

  Chromate_transp  90 l.lapllek 97 
                        +a l+ +
       KKY20009.1 429 TpIASLYIT 437
                      545555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3331.17
//
Query:       KKY20010.1  [L=529]
Description: putative high-affinity nicotinic acid [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-30  105.8  32.1    2.2e-30  105.8  32.1    1.3  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.081   12.4   0.0       0.27   10.7   0.0    1.9  1  DUF1129   Protein of unknown function (DUF1129)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8  32.1   2.5e-34   2.2e-30       1     352 [.      79     453 ..      79     454 .. 0.81
   2 ?   -4.4   0.5      0.77   6.9e+03      65      80 ..     469     484 ..     465     491 .. 0.46

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 2.5e-34
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlg 98 
                 l+l ++l++l+rs++g +      ed +++ ++++l+lt y++++a++  p   ++ +fG+rr+l   ++++++  +l++ ++ s+   +++rv+ G++
  KKY20010.1  79 LFLYYLLNSLDRSNAGNVKIYSFLEDAHMTSHQFNLALTWYFFTYAFLEAPSNMMMRKFGPRRWLSGLVVCWGAV-TLGSaWVKSYGDYCAARVMLGFF 176
                 688999*******98888888788999************************************************.5555486555579********** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee... 188
                 +++lf ++ + ++ w+ + e     +++++++ l+ ++g ll+ ++  + g      W+++f+i +i+++++++ ++++l ++ pe + ++  +     
  KKY20010.1 177 EAGLFQGCFYTLSCWYLRGELQTRCAFWYSATMLSGAFGGLLAYAVGGLQGhlglrqWQYLFIIEGIITMFFGL-VGFWLCVDFPETWSSRFFRPDemk 274
                 **********************************************977778*******************999.688888888888888888886777 PP

       MFS_1 189 .............kgtgpaplvp....awkallkdpvlw....illialllfffgfsglltllplylqevlgls..glllaglllallalvgailalla 264
                              +        p     w+a+l     w    i+ + ++++++ ++++ ++l + +++ lg++     +a+   a +++++++  + +
  KKY20010.1 275 flqlrvkyangpiA--------PddtfKWSAFLEAVKDWktyfIASLLAFGGSVPTYSVNYTLAT-MVKSLGYTsiR-AQAL--TAPPYVFAFFCVIAI 361
                 88777555553333........3444435555555544553223333333334444449999999.6*******642.4555..888888888888899 PP

       MFS_1 265 grlsdrlgrrrrlllallllllaalglallavt..ssavllllvlvliGfglgfvfpsllalasdla.ppeeagtasglfntags.lggalg 352
                 + +sdr++ r r ll+  ++ ++ + +++  ++    + +++++l+l+  g+ +  p++ +++  ++  p ++++a+g+ +t+g+ lgg +g
  KKY20010.1 362 AIYSDRYKCRARSLLISYSVGTIGIVILWPTLYysGLSGVSYFALFLVVAGYNMQAPAVGSWLGTNVrNPTKRAAAMGWQSTFGQlLGGTIG 453
                 999***99988888887777777777777777766566666668888888999999999999999997679**********99998888888 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 0.77
       MFS_1  65 lllglllfalglllll 80 
                 +++ l+l ++g+++++
  KKY20010.1 469 FITLLVLVIVGGYCAC 484
                 4444444444434433 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0     3e-05      0.27      99     144 ..     455     501 ..     439     506 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3e-05
     DUF1129  99 lalfskkkqtas.iGlitlllvalvgGlamvlvyrlltre.kkkkkrp 144
                   +f +k++ ++ +G+itll++ +vgG+   + + +  r  ++kk+r+
  KKY20010.1 455 N-IFVDKEAPTYkSGFITLLVLVIVGGYCACIANWYCLRAaNRKKDRI 501
                 3.45555666666********************999999877777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3543.01
//
Query:       KKY20011.1  [L=577]
Description: putative x-pro dipeptidyl-peptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-47  161.4   1.7    3.8e-46  158.8   1.7    1.9  1  DUF885    Bacterial protein of unknown function (DUF885)


Domain annotation for each model (and alignments):
>> DUF885  Bacterial protein of unknown function (DUF885)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.8   1.7   2.1e-50   3.8e-46      19     528 ..      57     556 ..      50     557 .. 0.74

  Alignments for each domain:
  == domain 1  score: 158.8 bits;  conditional E-value: 2.1e-50
                 -SHHHHHHHHHHHHHHHHHHCT.S-CCHH.HHHHHHHHHHHHHHHHHHHHHHHSHHHHTT-CCCCH....HHHHHHHHCGT....TSSCHHHHHHHHHH CS
      DUF885  19 lspaaeaaraarlraalaeldaaidrdkl.seerldldllrerleleletaeagypleqlralagp....vqqlpsllsee....pfateedleaylar 108
                 +s     + ++++ ++l+ l ++i+ d+l +e ++d+ ll+++++++ ++ +a+ + ++    a p     ++l +l +e+    p + ++ ++++++ 
  KKY20011.1  57 FSSTRSTRLQKFYDEHLTGL-SEISFDSLsQEGKVDYILLQNYITRQQRQLDAEVDSNKA---AEPlllfSAGLVRLCEERqqmkPMEPKKTAQDLFET 151
                 56677889999*********.88******8889*********************777777...444455644444444444000044455555555555 PP

                 CCCHHHHHHHHHHHHHHHHHTT.-S-HHHHHHHHHHHHHHHGTSSHHCCCHH.CCCCCC...HHHHHHHHHH.HHHHHHHHHHHHHHHHHCCHHHS-BS CS
      DUF885 109 laavpaaldqaranlregaaaglvpprrqvekvieqlrgllagaaaeasalvaplaeleaekealraeleaalaeavkpayaeladfleeellpaarkd 207
                  ++v ++   + ++  + ++   ++++  v++  + l+++++        +++ ++        ++  + +   +++ + +++la  ++e+l     ++
  KKY20011.1 152 TTKVLELKGRVESKEVKISKFSAFRAANKVDELCSLLKEWFS--------FYNGYDP------MFTWWVSEP-YKKIDEELQQLAGIIRERLVGIKGDE 235
                 555555555555444444444445555555555555555554........4544443......245556666.88899999999999999997776644 PP

                 S.....HHHHHHHHHHHHHS...SSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH.-.HHHHHHHHHC...H-GGGEEESHHHHHHHHHHHHHHHHHHH CS
      DUF885 208 apd...GeelYarllrsftt...tdltpeeihelglaelariraemeaiakevgf.kgdlaevlaalr...tdprfyleetdagreellaaaraaiael 296
                 + d   G+ + + +l   ++     +tpe++ e+g +e+   ++em++  +e+g+ + d+ ++l+ ++    +p    +    + e + + ar+a++ +
  KKY20011.1 236 D-DtivGDPIGRSALMDELEaekIPYTPEQLIEIGDNEYVWCEEEMKKASRELGYgD-DWHRALEYVKdlhVEP---GK----QTELVHDLAREAVDYV 325
                 4.3355555555555554441116799**************************9955.8999999999433333...22....2367788999999999 PP

                 CCHHHCCT---TTS-GCCCEEEEEE-SS.-S.EEEE---.TTSSS-EEEEESS-CHHCC...ETTCCHHHHHHHTTTTHHHHHHHHHCCGGS-HHHHHT CS
      DUF885 297 daklpehfgllpkaplevrrvpefiapsasg.ayytpps.adgsrpgiyyvnlpdvesf...pkyeletlaaHEgvPGHhlQialaqeledlprfrrll 390
                 ++   ++  ++p+ + e  r+  +  +++ + +++ +++ +  s p+  + + +++ s+   + +   ++++HE +PGHhlQ+ +  +   ++r r++ 
  KKY20011.1 326 KT---KDMVTIPQVAEEAWRMFMMSPEQQEVnPFFLGGTsIIVSYPTDKMNHGSKLMSMrgnNPHFSRSTVFHELIPGHHLQLYMNAR---VNRHRSI- 417
                 99...55556666666666666666555555568888886333555555443344222235566677****************99996...7889*99. PP

                 .H-H.HHHHHHHHHHHHHHHHT.TCCGCHHHHHHHHHHHHHHHHHHHHHHHHHCSCB--HHHHHHHHHHCS-S-HHHHHHHHHHHHH...STTCCCHHH CS
      DUF885 391 gfas.ayvEGWAlYaErlmdel.GlyddplerlgmlkaellraarlvvDtglHlakgwtreqaidfleentalteaeaesevdRyiv...wpGqalsYk 484
                  f +   +EGWA Y E +  ++  + + p++r+gml ++++r+ar+    + Hl +++t++ +id+l+++++ ++ +ae+ev+R  +   +p +  +Y+
  KKY20011.1 418 -FDTpFCIEGWAFYWEMVLWDDpEFPKGPENRIGMLFWRMHRCARITFSLKFHL-GQMTPQACIDYLVDKVGHERFTAEGEVRRSFAgeySPLYQAAYM 514
                 .999899**********9999857777**************************8.*****************************998777899999*** PP

                 HHHHHHHHHHHHHHTSTCGG--HHHHHHHHHHC-S--HHHHHHH CS
      DUF885 485 vGeleilelRekaekalgdkfdlkaFHdavLsqGslPldvLeea 528
                 +G l++ +lR+++      k+d k FHd++L+ G +P+++L++ 
  KKY20011.1 515 MGALQFYALRRELV--SSGKMDEKVFHDRILKAGQMPVELLRAL 556
                 ************97..677**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.49
# Mc/sec: 3526.53
//
Query:       KKY20012.1  [L=482]
Description: putative hexose transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-70  236.0  18.3    9.1e-70  235.8  18.3    1.0  1  Sugar_tr  Sugar (and other) transporter
    1.8e-22   79.7  39.3    1.8e-19   69.9  20.8    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.8  18.3     1e-73   9.1e-70      44     451 ..      18     434 ..       6     435 .. 0.93

  Alignments for each domain:
  == domain 1  score: 235.8 bits;  conditional E-value: 1e-73
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                  ++++ l +s++ +Ga++ ++   ++ d++GRk +l  aa++++ + +lqaaa+   ++ +++v+R+l+G g G+ s+ +P+y++E  p k+Rg   s+
  KKY20012.1  18 NTTTLALNTSSVWLGAFVIGIAYAKVPDYIGRKAALFWAALITLFAVILQAAAQ---NIAMFVVARILIGAGTGASSIAAPVYLAETLPLKWRGVGLSI 113
                 567788999*********************************************...**************************************9999 PP

                 HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHH..HHHC...HHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekgkeeeakevlak..lrge...edadrelaeekdsleaeqe 236
                    ++ +G l+aa++++g++k+++++ wr++ +lq ++++  li+l f+PESPr+l  +g+ +e   v+ak   +g    + +  +  e+ d++  e++
  KKY20012.1 114 IYDFWYVGGLIAAGVTYGTAKMDSTWAWRLPSALQGLFTVGCLIVLPFIPESPRWLADQGRFDECLHVVAKtyANGRiddPIVLVQHREILDTIAFEKS 212
                 9999*******************************************************************7655557556667788899999999988 PP

                 .........HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHH CS
    Sugar_tr 237 ee....kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks...llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagma 328
                 +     k+ +k ++   + r+r++++  ++if  l+G+n++ yy  t+++n+g+++s   l++++i+ +     ++ +  l d  GR+ + +++++  +
  KKY20012.1 213 RGkiatKVVLKDIMFHPSTRKRMILASSVAIFAMLSGNNIVSYYLGTMLDNAGITDSttqLEINVILNAFCLCCCIGGTVLADSHGRKAIAIISTSLLT 311
                 776666666777777777***************************************999999999999999999999********************* PP

                 HHHHHHH...HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHH CS
    Sugar_tr 329 icfvilg.ivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfagla 426
                 ++++++g +    +++++++  ++ +++++lf   +++gw+p+  ++ +E+   s+Rs+++ i +a+ + + +++ + fp+++eaig +++++++++  
  KKY20012.1 312 VFLFLFGgMNKVYGTSENNSGIYGTVAMLFLFQGSYSIGWTPLACLYPPEVMNYSMRSLGMGIYTAIGNAVGLFTVWAFPYALEAIG-WKTYMINGAWD 409
                 *******7555555555589999****************************************************************.*********** PP

                 HHHHHHHHHHS--STT--CCCCGGG CS
    Sugar_tr 427 vlfiifvfffvpetkgrtleeieel 451
                 vl + fv++  +etkgrtleei+e 
  KKY20012.1 410 VLEVAFVVWYWVETKGRTLEEIDET 434
                 **********************985 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9  20.8     2e-23   1.8e-19      18     321 ..       7     354 ..       1     360 [. 0.73
   2 !   23.9  10.5   1.9e-09   1.7e-05       4     183 ..     240     430 ..     237     466 .. 0.74

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 2e-23
       MFS_1  18 alplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlgagalfpagaaliadwfp 115
                 +lp  ++e + ++ +++ l ++ + lga+v  + ++ + d +Gr+  l++++l+++++ ++l  a +++ +++v+r+l G+g+ga+  a+ +++a+  p
  KKY20012.1   7 ILP-SYTEYFDLNTTTLALNTSSVWLGAFVIGIAYAKVPDYIGRKAALFWAALITLFA-VILQAAaQNIAMFVVARILIGAGTGASSIAAPVYLAETLP 103
                 456.899***************************************888888888888.55553338888***************************** PP

       MFS_1 116 keergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrkspkeee....................... 188
                  + rg ++++++ ++ +G ++++++    a   +   Wr++  + +++++ +++   +l + ++++r+   + +                         
  KKY20012.1 104 LKWRGVGLSIIYDFWYVGGLIAAGVTYGTAKMDStwaWRLPSALQGLFTVGCLI---VLPFIPESPRWLADQGRFDeclhvvaktyangriddpivlvq 199
                 **********************999997663333446***************88...667777777777766666678*********999999995555 PP

       MFS_1 189 ....kgtgpaplvp...........awkallkdpvl....w..illialllfffgfsg...lltllplylqevlgls...glllaglllallalvgail 260
                              +           a k +lkd  +       ++l++++ +f+++sg   ++++l + + +  g++   + l++ ++l +++l +   
  KKY20012.1 200 hreiL--------DtiafeksrgkiATKVVLKDIMFhpstRkrMILASSVAIFAMLSGnniVSYYLGT-MLDNAGITdstTQLEINVILNAFCLCC--- 286
                 55551........3444455444443444444443343332555666666665555556669999999.59******9984466666777777777... PP

       MFS_1 261 allagrlsdrlgrrrrlllallllllaalglallavt.........ssavllll....vlvliGfglgfvfpsl 321
                 ++ ++ l+d  g   r  +a+++++l++++l+l++           +    +++    +l+l+   +++ +++l
  KKY20012.1 287 CIGGTVLADSHG---RKAIAIISTSLLTVFLFLFGGMnkvygtsenN---SGIYgtvaMLFLFQGSYSIGWTPL 354
                 666888999955...56666666666666666666665568886332...222234456666666666666554 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 1.9e-09
       MFS_1   4 aaflsalarsilgpalpl.alaedlgispseigl....lltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..f....a.....sslw 86 
                 ++++ a+ +++ ++++ l ++ ++ gi+ s+ +l    +l ++ l ++++   + +l+d +Gr+ + +++  l+ ++ l+l+  +    +     s+++
  KKY20012.1 240 SVAIFAMLSGNNIVSYYLgTMLDNAGITDSTTQLeinvILNAFCLCCCIG---GTVLADSHGRKAIAIISTSLLTVF-LFLFggMnkvyGtsennSGIY 334
                 55566666666677777779999999999998885222444444444444...46799*******999999999999.333335755451567778899 PP

       MFS_1  87 .lllvlrvlqGlgagalfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrks 183
                  +++ l ++qG   +++++  a l    ++  + r++++g+++a  ++  +++  + ++ ++++gW  +++i+++  +l +  f++++++e + r  ++
  KKY20012.1 335 gTVAMLFLFQGSY-SIGWTPLACLYPPEVMNySMRSLGMGIYTAIGNAVGLFTVWAFPYALEAIGWK-TYMINGAWDVLEVA-FVVWYWVETKGRTLEE 430
                 6666666666666.777777777776666666**********************************9.99*****9999844.5677777777666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3084.45
//
Query:       KKY20013.1  [L=417]
Description: hypothetical protein UCRPC4_g04278 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.6e-122  407.5   0.0   6.7e-122  407.2   0.0    1.0  1  DUF1479   Protein of unknown function (DUF1479)


Domain annotation for each model (and alignments):
>> DUF1479  Protein of unknown function (DUF1479)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  407.2   0.0  3.7e-126  6.7e-122      11     415 ..      12     414 ..       6     415 .. 0.95

  Alignments for each domain:
  == domain 1  score: 407.2 bits;  conditional E-value: 3.7e-126
                 HHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHTT--SS-EEEHHHHHCT---HHHHHHHHHHTEEEEETSS-HHHHHHHHHHHHHHHHHTSS.HHHT CS
     DUF1479  11 krkLveeeakeeevkaswerlikaleeeieeikekgseliPeidfkdieegavsaefsaeikrrGvlvvrgvvpeeeaeewkeeikeYleknsd.ikgl 108
                 k+++ ++   ee++++ w ++ k+le+ ++++++kg+++iPe+df+d+ +    +e ++++k  G++vvrgvv++e++++w +++k+Y+++n++ i+g+
  KKY20013.1  12 KKSIAKQF-GEENIRRGWLKVCKELETITDNLAAKGTSAIPEVDFEDLFSL--PEESKQKLKDIGCFVVRGVVDREQVDTWFNDLKSYVAENRSsITGW 107
                 66666444.4999************************************99..899************************************999**** PP

                 TSSS-CEE-----HHHHHHHCSHHHHHHHHHHHTTSB-ETTEESSEEEEE------EEEE-TT--B--ECCEESS-STHHHH-HHHHHHTHHHHTS-GG CS
     DUF1479 109 pkekpqiyelyWskaqvkaRahpnvlaaqkflnslwesedekkrislatpitYaDrlrirkpgdasfaLgphvDgGsleRWedeeYrkvYkkvfeGewe 207
                 p+e+p + +ly ++ q++aR+hpn l++ k lns w+    ++  ++a p++YaD++rir+pg    +Lgph+D+Gsl+RW d +Yr++Y+ vfeG+ e
  KKY20013.1 108 PAENPFVLNLYFTPTQIAARSHPNQLRVAKELNSWWHD---SSDSATADPLSYADAVRIRPPGVPFYGLGPHIDAGSLSRWADSTYRSCYAPVFEGHPE 203
                 *************************************9...67788999************************************************** PP

                 G--TTB-TTGGG-----..STT--SS--SEEEEEESS-B-TTCT-EEE-S-TT.HHHHHHHHCCSTTS-...............TT-STT--TTS-EE- CS
     DUF1479 208 eydpwdaaeRveakedlyngagacsvfRtfQGwlalsdvkpgeGtlrvlPlvklataYllLRpffeekkeeeelaee..lkeeqdsklpgavpgsaqel 304
                 ++d +++  R +ak+ +++g++++ vfR fQGw+al++ +pgeG+l ++P vk a+aY++LRpff+e  ee+ l+ +  + + +++++pg++   +q l
  KKY20013.1 204 DLDLYNIGIRKDAKQAMFEGSAHSRVFRAFQGWTALTSAGPGEGSLMLYPAVKWAIAYVMLRPFFKEPAEENILDATkwTFDLENPWFPGTFREDSQLL 302
                 ******************************************************************999777655445456789*************** PP

                 -TTT-HH..HHTT-EE---B-TT-EEEEETT--EEE-SBCSSSS-EEEEE--B-EESHHHHHHHHHHHHHHHHT---TTS-S--G....GGG-TT---G CS
     DUF1479 305 teelhphLelketlvsiPdleaGDyvvWhcdlihavdkehegkkdssvlYipavPltqknaeylarqrkaflrgkpppDFpsegsGlg.eaefagrlte 402
                 ++ +hphL+lke +v+iP++ +GD+++Wh+d+ hav+  h+g++++sv Yi+a+P+t  n +y+a+q k fl+g+pp+DF + ++ l+ e +f+g  +e
  KKY20013.1 303 SPSSHPHLRLKECMVNIPQMYPGDTIWWHADMCHAVEVDHNGDHEASVAYIAATPSTDVNKAYIAAQLKDFLEGRPPEDFRNPKKKLTvEKDFVGYSGE 401
                 ********************************************************************************987765556********** PP

                 GG--HH.HHHCTT CS
     DUF1479 403 edlreveGlralg 415
                   + + eG+ a+g
  KKY20013.1 402 RAILSPEGRLAMG 414
                 **99999***998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2648.33
//
Query:       KKY20014.1  [L=391]
Description: putative pth11-like integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 2402.00
//
Query:       KKY20015.1  [L=423]
Description: putative metal-dependent amidase aminoacylase carboxypeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-09   36.1   0.0    1.3e-08   34.7   0.0    1.7  1  M20_dimer      Peptidase dimerisation domain
    1.4e-08   34.7   0.1    2.3e-08   34.0   0.1    1.3  1  Peptidase_M20  Peptidase family M20/M25/M40


Domain annotation for each model (and alignments):
>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   1.5e-12   1.3e-08       8      86 ..     199     273 ..     197     293 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 1.5e-12
                 EEEEEEE-B-EEGG.-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHH CS
   M20_dimer   8 ggkitvkgkagHsg.apgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiRllp 86 
                 +++it++g  +H++ ap +g+NA+ + ++  ++  +++++i+     p + +   + +gG+a n+ipd+a++++ +R + 
  KKY20015.1 199 DFEITFTGLPAHAAlAPWKGINALDAVVQGYNSVSALRQQIQ-----PDERVHGIISHGGDAVNIIPDHATVQYGVRAPT 273
                 699**********************************87766.....88888888889999****************765 PP

>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.1   2.6e-12   2.3e-08       2     185 ..      99     371 ..      98     396 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 2.6e-12
                    EEEES-BSSTTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHH.HHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH.HHHTTTCESEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  Peptidase_M20   2 lgsHlDvVpeeetdgwttpfslteedGklyGrGaddmkggvla.alealralkdegikpkgtivllfqpdEEggrgGakalle.gleerekvdavf 95 
                    +++ +D++p                 G  +++G++   ++ l+ ++ a++alk +g   +g ++ll +p+EE g gG   l++ g+   ++vda +
     KKY20015.1  99 FNAEYDALP-----------------GIGHACGHNLIATSALGaFVGAVAALKTSGK--PGRVRLLGTPAEERG-GGKIDLIKaGAY--KDVDACL 172
                    677788888.................777*****98777666505678899999984..9************76.9999***96554..5899988 PP

                    EEEEESSSBTCHSTETEEEE............................................................................ CS
                    xxxxxxxxxxxxxxxxxxxx............................................................................ RF
  Peptidase_M20  96 elhieepgileagklaigvv............................................................................ 115
                     lh + +    ++                                                                                   
     KKY20015.1 173 MLHPGSTNDYPKNL-----Fgtsfdptlattdfeitftglpahaalapwkginaldavvqgynsvsalrqqiqpdervhgiishggdavniipdha 263
                    88844333333222.....1233445566888899999********************************************************** PP

                    ................................EEEEEEEEEESHEEEC.CHHHHHHHHHHHHHHHTSCEEEE.EES..SSBHTHHHH.TTTEEE.E CS
                    ................................xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx.xxx..xxxxxxxxx.xxxxxx.x RF
  Peptidase_M20 116 ................................kvevelleggapvtln.dsplvkalaeaaeelfgekveli.vsg..pggtdarff.agiptv.m 173
                                                     +e++l ++++ + +  + p++ a ae++ +l g++ e+    +  p++td + +  + p+   
     KKY20015.1 264 tvqygvraptlsgthllrervincfrgaalatGCEMSLKQQMEYADMRpNRPIATAYAEVMANL-GYDIECNfEAAavPASTDQGNVsYECPSWqG 358
                    *******************************7477776666666666667*************9.99955553333599****9999666686655 PP

                    EEE.SSGGCTTST CS
                    xxx.xxxxxxxxx RF
  Peptidase_M20 174 ifg.pgsglaHsp 185
                    +fg   +++++++
     KKY20015.1 359 GFGiVTEKDVYNH 371
                    5775445666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 2730.10
//
Query:       KKY20016.1  [L=509]
Description: hypothetical protein UCRPC4_g04281 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-103  346.3   0.0   1.7e-103  345.9   0.0    1.1  1  DUF1485   Metallopeptidase family M81
    3.7e-60  203.1   0.1    5.8e-60  202.5   0.1    1.3  1  MlrC_C    MlrC C-terminus


Domain annotation for each model (and alignments):
>> DUF1485  Metallopeptidase family M81
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.9   0.0  1.9e-107  1.7e-103       2     288 .]       7     295 ..       6     295 .. 0.99

  Alignments for each domain:
  == domain 1  score: 345.9 bits;  conditional E-value: 1.9e-107
                 EEEEEEE--EETT--S-B-GGGEE.EEETHHHHH..HHHTS-SHHHHHHHHHHHTT-EEEEEEEEEE-SEE-B-HHHHHHHHHHHHHHHHHS-...... CS
     DUF1485   2 iaiaglahEtntFspvrttledFeavlrGeelle..afrgtntelggfidaaeaagvelvpllvaralPgGpvtrdayeelkaeilerlkaalp..... 93 
                 iaiagla E +tF+p+rt + +F+ + rG+++l+  +f + +telg        ++v++ ++l++++lPgG+vtr+a+eel++ei++rl++ ++     
  KKY20016.1   7 IAIAGLASENSTFTPSRTLAPAFH-PVRGDDILNyyPFLRHGTELG--------NDVDWRGALIGHSLPGGIVTRNAFEELAEEIVARLTSIVAslnsp 96 
                 89**********************.*********999*********........**************************************99999** PP

                 -SEEEEEE-S---BSS-SSHHHHHHHHHHHHHTTTSEEEEEE-TT----HHHHHH-SEEEE---SS---HHHHHHHH.HHHHHHTTT-S...S-EEEEE CS
     DUF1485  94 lDgvlldlHGAmvveglddaEgelleriRavvGpdvpiaaslDlHgnvserlveaadllvayrtaPHvDmaetgeraarllvellkgek...rpvkalv 189
                 lDg+++d+HGAm+v g++d E ell+riRav+Gpd++++as+DlHgnvs++l++++dl+++yr+aPH+D  +t+era+ ++v+llk++    rp ka++
  KKY20016.1  97 LDGLWFDIHGAMYVAGFQDIESELLKRIRAVIGPDTIVSASMDLHGNVSRELAHQIDLITCYRMAPHEDELDTKERACLNMVKLLKNRPrdsRPLKAWI 195
                 **************************************************************************************9998889****** PP

                 EE-B--BS-.--SSSSHHHHHHHHHHHHHTSTT--EEEEE---TT---SS-SEEEEEEESSS.SSHHHHHHHHHHHHHHTGGG..SB---B-HHHHHHH CS
     DUF1485 190 kvpillpgektsTrdePakslyarleeleaeegvldasvlvGFpwaDvpragasvvvvgddeeaaaeaaaeelaralwdarae..fvaptgsleealar 286
                 ++pillpge+tsTr+ePak++ya+++++e+ eg+lda+++vG++waD+pr++a v+v+g+++ + ++ +ae+la+ +wda++e  fv+ptgs++e+l++
  KKY20016.1 196 PLPILLPGEQTSTRVEPAKHIYAAVPDVEKLEGILDAAIWVGYAWADEPRNRAIVIVTGWEK-NIVAVGAEKLAKLFWDAHEEfkFVGPTGSFAECLDT 293
                 **************************************************************.***********************************9 PP

                 HH CS
     DUF1485 287 Al 288
                 Al
  KKY20016.1 294 AL 295
                 95 PP

>> MlrC_C  MlrC C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.5   0.1   6.4e-64   5.8e-60       1     177 [.     304     473 ..     304     474 .. 0.97

  Alignments for each domain:
  == domain 1  score: 202.5 bits;  conditional E-value: 6.4e-64
                 EEEGGG-GGGT------HHHHHHHHH-T...T...--EEEEEE-HHHHHHHHHH-TT-EEEEEES-SS-TTS.--EEEEEEEEEEEEEEEE--SSTTTT CS
      MlrC_C   1 laDsgDNpgaGgsgdvtalLrellarge...k...kvlvasivDpeavaaaaaagvGatveltlGgkvdalhgepveltgtVealsdgrytaegpmltg 93 
                 ++DsgDNp+aGgsgdvt+ L++llar+e   +   +v++as+++peav++a++agvGatv++t+G++vd+ h++p++ltg+V+++++g+++a       
  KKY20016.1 304 ISDSGDNPTAGGSGDVTWGLKQLLARPEfkdPsgpTVIYASVPGPEAVQTAVEAGVGATVTVTAGAEVDNIHAGPITLTGKVHSIKHGDQHA------- 395
                 89**************************9761566*********************************************************....... PP

                 -EEEEEEEEEEEETTEEEEEESS-----STHHHHHTT--GGG-SEEEES-SSTTHHHHTTTE.EEEEE---STTSS-GGGS--S CS
      MlrC_C  94 qevdlgrtavlrvggvdvvvtsrrkqphdleqftslgidpeeadivvvKsgvylraefapiaadiimaltpGvvdqdlarlpyk 177
                        ++vl+vg+v  ++t+ rk++h++++ft+l+++p++ad+v+vK+g yl++e+++iaad+++ ltpG+vdqdl+rl+++
  KKY20016.1 396 -----IIEVVLQVGSVFAILTKLRKPYHKEHDFTDLNLSPRSADLVIVKIG-YLEPELYDIAADWMLGLTPGGVDQDLQRLGHH 473
                 .....9*********************************************.*****************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.51
# Mc/sec: 2984.79
//
Query:       KKY20017.1  [L=403]
Description: putative hexose transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-57  194.0   9.8    4.6e-57  193.9   9.8    1.0  1  Sugar_tr    Sugar (and other) transporter
    2.2e-14   53.2  12.5    2.2e-14   53.2  12.5    1.8  2  MFS_1       Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.27   11.3   3.4        7.7    6.6   0.0    3.4  3  Holin_BhlA  BhlA holin family


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.9   9.8   7.8e-61   4.6e-57     104     452 .]       1     361 [.       1     361 [. 0.96

  Alignments for each domain:
  == domain 1  score: 193.9 bits;  conditional E-value: 7.8e-61
                 GGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT CS
    Sugar_tr 104 vlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekg 202
                 ++++gR+++G+g  +  + + +y+sE  p ++R   v+l + ++ +G l+aa+++lg+ + ++++ wr +  +q ++++l +++l f+PESPr+lv+ g
  KKY20017.1   1 MFVIGRIILGFGSAVSGIAAGVYLSETFPSRWRAWGVGLLNDFYYVGALIAAGITLGTGQWQSTWAWRAPSLFQGIFSVLCIVILPFIPESPRWLVHEG 99 
                 689************************************************************************************************ PP

                 -HHHHHHHHHHHHHC.....HHHHHHHHHHHHHHHHHHH......HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HHH CS
    Sugar_tr 203 keeeakevlaklrge.....edadrelaeekdsleaeqeee.kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks...llv 292
                  +eea++v+a+ + +     + +    +e++d+le e++e  ++s ke++++ t r+rllig+    f ++ G+ +  yy  + ++++g+++s   l +
  KKY20017.1 100 YYEEARTVVAQTNANgditdPVVLTVYKEIVDTLEWEKKEGrTMSPKEIIKTPTARKRLLIGMSPGPFSCVAGNIIASYYLGSELDTAGVTNSndqLKA 198
                 ***********6666557766667778999999999977779********************************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS.......CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHH CS
    Sugar_tr 293 tiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvaks....kaasivaivfialfialfalgwgpvpwvlvsElfpqsvRska 387
                 ++++ v+  + ++++  l  ++GR+++ l+  +   ic++++g+   ++ ++     ++  ++ +++++lf  ++++ w+p+++++  E+   s+R+ +
  KKY20017.1 199 NVVLNVWCLLCCLAGTHLAAKWGRKPTALMTEVLLVICLFLIGGLSKMYADNPdgasQSLVYGDVAMMFLFQGFYSIAWTPLLYLYPNEIMNYSIRANG 297
                 *******************************************9999999999898999999************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 388 laiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                  a++  + +   ++  +++pi +++ig +++++v+++  ++ +i + +  +etkg+tlee++++f
  KKY20017.1 298 VAFSSLMLNGLALVLVFIMPIGLSNIG-WKMYIVNGSWDIVIVILIAVYWVETKGKTLEEVDAIF 361
                 ***************************.*********************************9987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2  12.5   3.7e-18   2.2e-14      87     341 ..       1     299 [.       1     313 [. 0.76
   2 ?   -0.3   5.1     0.068   4.1e+02      95     263 ..     270     318 ..     266     379 .. 0.49

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 3.7e-18
       MFS_1  87 lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrk 182
                 +++++r++ G+g++++  a+++++++ fp + r+ ++gll+ ++ +Ga++++++     ++ +   Wra+ ++ +i+s+l++v   +l + ++++r+ +
  KKY20017.1   1 MFVIGRIILGFGSAVSGIAAGVYLSETFPSRWRAWGVGLLNDFYYVGALIAAGITLGTGQWQStwaWRAPSLFQGIFSVLCIV---ILPFIPESPRWLV 96 
                 79*************************************************999999997666889***************99...5555666666666 PP

       MFS_1 183 spkeee.................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls....... 241
                  +   e                                 ++++++ ++p  ++++++     lli++  + f   +  +    yl + l+ +       
  KKY20017.1  97 HEGYYEeartvvaqtnangditdpvvltvykeivdtlewEKKEGRTMSP-KEIIKTPTARKRLLIGMSPGPFSCVAGNIIASYYLGSELDTAgvtnsnd 194
                 54444466***********************999999998888888888.4444444433234444444444444433333333333333334446665 PP

       MFS_1 242 glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt.......ssavllll...vlvliGfglgfvfpsllalasdlap 330
                   l a ++l + +l++   +l ++ l+ ++gr+++ l++ +ll+++++++  l+          s++l++    +++l+  ++++++++ll+l  + + 
  KKY20017.1 195 Q-LKANVVLNVWCLLC---CLAGTHLAAKWGRKPTALMTEVLLVICLFLIGGLSKMyadnpdgASQSLVYGdvaMMFLFQGFYSIAWTPLLYLYPNEIM 289
                 4.888889********...999****************9999999999999999999999987444444447788888888999999999988877662 PP

       MFS_1 331 peeagtasglf 341
                  +++ +a+g++
  KKY20017.1 290 -NYSIRANGVA 299
                 .4444444444 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.068
       MFS_1  95 qGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgp 193
                 qG+                                                                                                
  KKY20017.1 270 QGFY----------------------------------------------------------------------------------------------- 273
                 3332............................................................................................... PP

       MFS_1 194 aplvpawkallkdpvlwillialllfffgfsg.lltllplylqevlgls....glllaglllallalvgailall 263
                                               s+  + ll ly +e +++s    g+  ++l+l  lalv ++++++
  KKY20017.1 274 ------------------------------SIaWTPLLYLYPNEIMNYSiranGVAFSSLMLNGLALVLVFIMPI 318
                 ..............................223444444455666666655553333332222222222222222 PP

>> Holin_BhlA  BhlA holin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0013       7.7      12      26 ..      74      88 ..      71      95 .. 0.88
   2 ?    0.9   0.1     0.077   4.6e+02      14      21 ..     204     211 ..     194     215 .. 0.87
   3 ?    1.9   0.1     0.038   2.2e+02       7      32 ..     326     352 ..     325     368 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0013
  Holin_BhlA 12 qGiwavLfvvllvYi 26
                qGi++vL++v+l +i
  KKY20017.1 74 QGIFSVLCIVILPFI 88
                9**********9776 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.077
  Holin_BhlA  14 iwavLfvv 21 
                 +w++L+++
  KKY20017.1 204 VWCLLCCL 211
                 7******7 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.038
  Holin_BhlA   7 klaitqGiwavLfvvll.vYilkkqek 32 
                 k+ i +G w +  v+l+ vY + ++ k
  KKY20017.1 326 KMYIVNGSWDIVIVILIaVYWVETKGK 352
                 677889***999999885798887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.35s 00:00:01.04 Elapsed: 00:00:00.58
# Mc/sec: 2084.02
//
Query:       KKY20018.1  [L=297]
Description: putative 2-dehydropantoate 2-reductase family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-26   90.9   0.0    7.9e-26   90.5   0.0    1.2  1  ApbA      Ketopantoate reductase PanE/ApbA
    9.9e-15   54.8   0.0    1.7e-14   54.1   0.0    1.3  1  ApbA_C    Ketopantoate reductase PanE/ApbA C terminal
  ------ inclusion threshold ------
      0.018   14.8   0.0        5.6    6.8   0.0    2.5  2  Moricin   Moricin
      0.031   13.6   1.4      0.066   12.5   1.2    1.6  2  ThiF      ThiF family
       0.17   10.8   0.0       0.44    9.5   0.1    1.5  2  DUF1424   Putative rep protein (DUF1424)


Domain annotation for each model (and alignments):
>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.0   2.2e-29   7.9e-26       2     151 ..       8     165 ..       7     166 .. 0.90

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 2.2e-29
                 EEES-SHHHHHHHHHHHH.HTHCEEEE-SCHHHHHHHHHCEEEEETT.CEEEEEECEEECCH....SCCCCS-ESEEEE-SSGGGHHH.HHHH.HGGGE CS
        ApbA   2 ailGaGaiGsllaakLak.agadvtlilrsrrlealkknGlrltseg.geeilrppealsae....ekselepidlvivtvKayqtee.alee.ikpll 92 
                 + +G+G+iG++ a +L     a v  +lrs+ ++a++k+G++++s++ g ++  +p++l ++    ++ +++p+d+++ t+K+ +++   l+e ikp++
  KKY20018.1   8 LLVGSGGIGTIAALNLETgGRAAVSAVLRSN-FAAVEKRGFNIKSCDhGVVNGFKPTELLSSipnvATGNISPFDYIVCTTKNIPDVPpTLAEiIKPAV 105
                 789*************9955555********.***************9655555555555556999889***************9998788888***** PP

                 CTC.EEEEEESSSSCHHHHHTTTSTTSEEEEEEEE-EEEEEETTEEEECS--EEEEEESS CS
        ApbA  93 dpn.tvvlllqNGlgheeelrealpkprvlggvtthgatregpgevhhagkgeikigela 151
                 +p  +vv+l+qNGl+ e+++ +a+p + vl+gv++ g+++ ++ge+ h +++++ +g+++
  KKY20018.1 106 TPGhSVVVLVQNGLNIERPILAAFPSNIVLSGVSFCGSHEINHGEIVHEDNDRLFVGAFR 165
                 *9989***************************************************9986 PP

>> ApbA_C  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   4.6e-18   1.7e-14       5      87 ..     202     284 ..     198     287 .. 0.92

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 4.6e-18
      ApbA_C   5 arweKllinaainpltalldckngell.espelralvrallkEalavaeaegvelseerleeaveavlektaanrsSMlqDvea 87 
                 +rw+Kll+na++np++a++d+++g++  + ++++ lv+++++E+ a a+a+g+ l+ee l + + +    t  n +SM+ Dv++
  KKY20018.1 202 TRWRKLLYNACLNPVCAITDLDTGRIQlAPGAVDGLVKPAMNEIRAAAKAMGHDLPEE-LIDFMITMDPITMYNPPSMQVDVRK 284
                 79************************967778899*****************999999.888888888889999********97 PP

>> Moricin  Moricin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0016       5.6      20      37 ..      45      62 ..      40      64 .. 0.92
   2 ?    5.3   0.0    0.0048        17       5      19 ..     242     256 ..     239     257 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0016
     Moricin 20 RAlNIASTAnDvvsalKh 37
                R  NI S  + vv+ +K+
  KKY20018.1 45 RGFNIKSCDHGVVNGFKP 62
                889**************9 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0048
     Moricin   5 IkAIkkvaKAVGkGL 19 
                 ++ I+  aKA G+ L
  KKY20018.1 242 MNEIRAAAKAMGHDL 256
                 588**********76 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.2   1.9e-05     0.066      18      41 ..       4      27 ..       2      34 .. 0.88
   2 ?   -2.7   0.0      0.82   2.9e+03     105     121 ..      75      91 ..      61     112 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.9e-05
                TSEEEEE--SHHHHHHHHHHHHHT CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 18 dskvllvGaGglGsellknLalsG 41
                +s+vllvG Gg+G +++ nL   G
  KKY20018.1  4 KSRVLLVGSGGIGTIAALNLETGG 27
                79****************997665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.82
                 HHHTT-SEEEEESSSHH CS
                 xxxxxxxxxxxxxxxxx RF
        ThiF 105 ellesvDlVvdalDnie 121
                   ++ +D++v ++ ni+
  KKY20018.1  75 GNISPFDYIVCTTKNIP 91 
                 45677777777777764 PP

>> DUF1424  Putative rep protein (DUF1424)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00012      0.44     148     241 ..     100     190 ..      96     199 .. 0.84
   2 ?   -2.2   0.0      0.44   1.6e+03      90     160 ..     203     277 ..     200     285 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00012
     DUF1424 148 ileptepagngpagyvhihlgvfvkgpvvaeqfedvldahlknsetagreahravveedededavsvrrsarpdredgvenlgaylaaymagey 241
                 i++p    + g +  v ++ g+ +  p++a    +++ + +  + +  +  h  +v+ed+d   v   r    dre+ ve   a++  y ag  
  KKY20018.1 100 IIKPAV--TPGHSVVVLVQNGLNIERPILAAFPSNIVLSGVSFCGS-HEINHGEIVHEDNDRLFVGAFRNPALDREKEVEAAEAFVQMYKAGGK 190
                 555554..55777888899999999999999999999999998855.5667888*************************************964 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.44
     DUF1424  90 ewgdllhtamvtltasste.eegrlr..p.llehl.rdllesweavrdalarvledrefeylaileptepagngpa 160
                 +w +ll+ a +   ++ t+ + gr++  p  ++ l +  ++   a  +a+ + l +   +++  ++p +   n p+
  KKY20018.1 203 RWRKLLYNACLNPVCAITDlDTGRIQlaPgAVDGLvKPAMNEIRAAAKAMGHDLPEELIDFMITMDPIT-MYNPPS 277
                 677888777766555555525566541122344431445666777777888888887788888888777.555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.51
# Mc/sec: 1753.35
//
Query:       KKY20019.1  [L=593]
Description: putative c6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-52  177.3   3.0    1.6e-51  175.3   3.0    1.7  1  Fungal_trans_2   Fungal specific transcription factor domain
  ------ inclusion threshold ------
      0.024   14.4   0.0      0.046   13.5   0.0    1.4  1  PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-t


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.3   3.0   1.8e-55   1.6e-51       1     380 [.     166     589 ..     166     592 .. 0.89

  Alignments for each domain:
  == domain 1  score: 175.3 bits;  conditional E-value: 1.8e-55
  Fungal_trans_2   1 elldyyldnvapllspvpes.snpfrkvllplalsnk..............allhallalsafhl..qskgpkdslereakrykslalkelqeal 78 
                     +ll++y d + p+lsp + s  +p++ ++lp a+++               a l+a+la saf l  +s+ + +++++  + y++la +el+ +l
      KKY20019.1 166 FLLSHYRDTIIPILSPLKYSkTSPWKVLHLPGAMNALaemtmgsrgnhartAFLYAILATSAFGLlrSSSAGTEHWQELGNLYQTLAQQELKLSL 260
                     699**************9998********************************************77666666679******************* PP

  Fungal_trans_2  79 aelsstls.rnekykdiLaaiLllcsieissgdvsdwrvhLeaatsliksrggskasssslss...............karfllri.fayldils 156
                     +  ++++  +++kyk+iL a+L++  + i+sg +++  ++L  a+++i+ rg++   +s+ls+               + ++  r+ ++ +di+ 
      KKY20019.1 261 SQETTKSGpKRAKYKEILLATLSMATVSIFSGAKDKTIIYLIDAERFIRLRGLT---KSKLSRkvtshgsgsgspecdASPLSPRFgISRWDIIP 352
                     *******9**********************************************...55555545556666777788755555555235699999 PP

  Fungal_trans_2 157 sttlgrgpsfpseeyekllenkkeesdsgldplmGcsnslilliseisrLarekrsarkd...seleplsileeaseleqrllswkprssdlepd 248
                     + +  ++  + + +   +le +   +   + +++G+++s + l+s+++rL++e++ +  +   + ++++++ ++a+ le+ + +w p+ +++ +d
      KKY20019.1 353 DYAMTTEKDMKTGQEDLHLEIPGRWEPTLYPDIYGIPESFMVLLSQVIRLGNERDVFMTSraaTGPNFRDLDRRAKLLEKHIYDWTPPAQACPED 447
                     99999888888888888888844555555889*************************999999*****************************999 PP

  Fungal_trans_2 249 ldeterassls......kdltelfrlaaliylyrlvlglpps..spevqelvkkllellellpsspvaiasLlWplFiaGceavdeddRdfvrrr 335
                     +d++ + + +       k++  ++++a+li+++r+v+++++   ++ev+ + + l +++++  +     ++++Wp+F+a++ea d d ++f+ ++
      KKY20019.1 448 YDSSVESQLYAsnrkiiKWMLLAMHHALLIFFHRRVYDVNTRllQHEVRMVQRYLQKCMDEDAKRADYTVGIVWPAFVAASEALDFDVQEFFSSW 542
                     99999999888999998888889*******************8888888888888888888888888999************************* PP

  Fungal_trans_2 336 leele.qsrlgnvrrarqvleevWrrrd.dgeekidWrdvmekkgwe 380
                     + +   +s++ ++++ar+  e++W+ r+  ++ +  W d++++k+ +
      KKY20019.1 543 FSTSYrESGMISFENARKAAESIWALRRePENDCLTWPDILRSKRLT 589
                     *****99999******************65666999*****776655 PP

>> PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.2e-06     0.046      95     132 ..     442     480 ..     434     503 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.2e-06
  PhoLip_ATPase_C  95 lkyPelYklgqknk.lfnlktfllwileglyqsliiffl 132
                      +++Pe Y ++ +++ + + +++++w+l ++ ++l+iff 
       KKY20019.1 442 QACPEDYDSSVESQlYASNRKIIKWMLLAMHHALLIFFH 480
                      679*****87776658888******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.52
# Mc/sec: 3447.22
//
Query:       KKY20020.1  [L=129]
Description: putative class ii aldolase adducin domain containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-13   50.5   0.0    2.9e-13   50.2   0.0    1.1  1  Aldolase_II  Class II Aldolase and Adducin N-terminal domain


Domain annotation for each model (and alignments):
>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   1.6e-17   2.9e-13     114     186 .]       3      76 ..       1      76 [. 0.82

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 1.6e-17
                  SHHHHC.HSSSEEEEES-SSTTCHHH....HHHHHHHHHHS-SEEEETTTEEEEEESSHHHHHHHHHHHHHHHHHHH CS
  Aldolase_II 114 tqeaaklllgdevpvipyaapgteel....gealaealkedakavllrnHGlltvGetleeAvalaetleeaaeiql 186
                  +q+  ++ +gd ++v+ ++  g + l    +e+la+al+++ k+++lrnHGlltvG+t++eA++l++ le+++eiql
   KKY20020.1   3 NQDVTMF-YGDALGVYGDFG-G-VVLdnaeSERLADALGDNGKGLILRNHGLLTVGQTVDEAAYLFTLLERSCEIQL 76 
                  6677774.477888876666.3.44455568********7679********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 883.36
//
Query:       KKY20021.1  [L=118]
Description: hypothetical protein UCRPC4_g04286 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 847.48
//
Query:       KKY20022.1  [L=533]
Description: putative phosphotransferase enzyme family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-11   43.6   0.0      4e-10   40.0   0.0    2.2  1  APH       Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.045   12.6   0.0      0.074   11.9   0.0    1.2  1  PRONE     PRONE (Plant-specific Rop nucleotide exchanger)
       0.15   10.9   0.1       0.53    9.1   0.1    1.8  2  DUF1679   Protein of unknown function (DUF1679)


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   6.7e-14     4e-10       8     201 ..      62     335 ..      57     337 .. 0.65

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 6.7e-14
                 .SSCEEEEEEETT-.-EEEEEE-TT..S-HHHHHHHHHHHHHHH.HTT-B--B-CTTB.S-EEETTEEEEEEE----EE-SS...HHHHHHHHHHHHHH CS
         APH   8 gasnrtylvttpag.ryvlrrnppa..raaeeirrevallrlLa.kagvpvPevlagd.tddeeigllfalieyvpgrsllr...klsaaqlpelleal 98 
                 g  n++++++ ++g  ++ r+++p    +   +++eva +++ +  +++pvP vla+    ++  g ++ l+e   g +l++   +l    + e++e+l
  KKY20022.1  62 GGFNKVFRLVMDDGsVVIARIPNPNagPPGKAVASEVATMDFAStILEIPVPTVLAWSgDLENPVGSEYILMEEASGSHLSEvweELEIHAKAEVVEEL 160
                 5568899999999736668888877867777789********9955555******865577888888***************99944555566666666 PP

                 HHHHC....................................CHHCH.-STTTB-..........SHHCHTCCHHHHHHCHHH.CCCGCCTCC....HHH CS
         APH  99 gefla....................................alhqvdpaalpla..........dflaqdlellrqlesata.rllaselld....lle 146
                 +   +                                    +l          +           ++ + ++++r +++  + ++l ++        +e
  KKY20022.1 161 VGIEKkllslsfsrygnlffaknafegcekvdvsgnlpesrRL----------DasnrfvigpvVDR-DFWNEERSIMKIDRgPWLSAAEYLkaisQRE 248
                 6666633335556666666666555555555444433333322..........13333333332222.3355555665555544433333332333333 PP

                 HHHHH.................................HHHHHHHH--S.......SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEEC CS
         APH 147 eleeq.................................vlaalaallpg.......elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpp 201
                 +                                     +    +a +          ++++l+H Dlh +Nl +d  ++++t++iD++da +gp 
  KKY20022.1 249 K---TwlscyavpkqgrkllyvpisqnsvnahvslydkF----LAIAEFvlpseggLVKPTLWHWDLHAPNLFID-SKNKLTALIDWQDAWVGPL 335
                 3...14447777777777777777777777777744443....33333355558889******************.99*************9986 PP

>> PRONE  PRONE (Plant-specific Rop nucleotide exchanger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.2e-05     0.074      98     164 ..     189     261 ..     182     273 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.2e-05
                 E-HHHHTHHHHHHHHHHHHHHHHHTTCS-SSEE--TTSH.........HHHT------CCCTTS--EE--TT- CS
       PRONE  98 pRsDllinlPaLrkldamLleildsfkdteFwYvekgseas......aessrkksqrkeekwwlPvpkvpkeG 164
                 ++ D+  nlP  r+lda    ++  + d++Fw  e+++++       ++++  k+  + ek wl +  vpk+G
  KKY20022.1 189 EKVDVSGNLPESRRLDASNRFVIGPVVDRDFWNEERSIMKIdrgpwlSAAEYLKAISQREKTWLSCYAVPKQG 261
                 5789********************************999657888876666778889999***********99 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   8.8e-05      0.53     265     303 ..     297     332 ..     269     335 .. 0.79
   2 ?   -2.3   0.0      0.26   1.5e+03     126     154 ..     375     401 ..     364     421 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 8.8e-05
     DUF1679 265 Gi.kkvlvhgDlwsaNiLfseeeegklklkkviDyQlvsl 303
                 G+ k+ l h Dl + N++   ++    kl+++iD+Q + +
  KKY20022.1 297 GLvKPTLWHWDLHAPNLFIDSKN----KLTALIDWQDAWV 332
                 7779************9998855....59*******8766 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.26
     DUF1679 126 lnheeilltkvyflkkfdeenklkgyiim 154
                 +  e+ +l ++y ++  +e+ +lkg++ +
  KKY20022.1 375 V--EKSILLQIYESSTSEENPDLKGVLQI 401
                 3..57788899**99999999***99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.49
# Mc/sec: 3254.92
//
Query:       KKY20023.1  [L=740]
Description: putative succinate-semialdehyde dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   9.6e-115  383.3   0.0   1.6e-114  382.6   0.0    1.3  1  FMN_dh        FMN-dependent dehydrogenase
   1.4e-112  376.6   3.6   1.7e-112  376.3   3.6    1.1  1  Aldedh        Aldehyde dehydrogenase family
    7.3e-07   28.5   0.0    1.9e-06   27.1   0.0    1.7  1  IMPDH         IMP dehydrogenase / GMP reductase domain
    1.5e-06   27.9   0.0    2.7e-06   27.0   0.0    1.4  1  NMO           Nitronate monooxygenase
    1.6e-05   24.3   0.0      3e-05   23.3   0.0    1.3  1  Glu_synthase  Conserved region in glutamate synthase
    8.8e-05   21.9   0.0    0.00024   20.4   0.0    1.8  1  DHO_dh        Dihydroorotate dehydrogenase
    0.00039   19.8   0.1     0.0013   18.1   0.1    1.9  2  ThiG          Thiazole biosynthesis protein ThiG
     0.0043   16.5   0.0      0.011   15.2   0.0    1.6  1  His_biosynth  Histidine biosynthesis protein
  ------ inclusion threshold ------
      0.046   13.1   0.3        0.2   11.1   0.0    2.2  3  G3P_antiterm  Glycerol-3-phosphate responsive antiterminator


Domain annotation for each model (and alignments):
>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.6   0.0  7.8e-118  1.6e-114       1     346 [.     372     726 ..     372     728 .. 0.92

  Alignments for each domain:
  == domain 1  score: 382.6 bits;  conditional E-value: 7.8e-118
                 HHCCS-HHHHHHHH--STTSHHHHHHHHGGGGEEE---SSSS-SS-B--EEETTEEESSSEEE--BSTGGGTSTTHHHHHHHHHHHHTS-EEEETT-SS CS
      FMN_dh   1 ArkrlpkkafayvaggagdevtlrenraaferirlrprvlrdvskvdlsttllGqklslPvliaPvglaklahpdgelalaraaakagipfvlstvast 99 
                 Ar  ++k++++y+a g++d+++lren +af+r+++ prv+rdvs+vd+stt+lG+k+++P++iaP +++kla  +gel + raa+++g+ ++ls++++t
  KKY20023.1 372 ARGCMKKEVWDYYACGTDDQIALRENIEAFDRLKILPRVFRDVSTVDTSTTILGKKYPIPIGIAPSAMQKLAGGEGELDVSRAASELGVNMTLSSQSTT 470
                 788899********************************************************************************************* PP

                 -HHHHHH...HHTT....-EEEEEE-CSSHHHHHHHHHHHHHCTESEEEEESSTSS---BHHHHHCT--BSTT-T.G.TTGGGSTSGSCCTTH...... CS
      FMN_dh 100 sleevaa...aaeg....plwfqlyvpkdrelteellkraeaagykalvltvDtpvlgkRerdlrngfslppklklrnllqelakpewaaeal...... 185
                 sle+v+a   ++eg      wfq+y+  d e +  l+krae+agy+alvltvDtpvlg+R +++++ + lp +l l+n+ + ++ p+ ++ +       
  KKY20023.1 471 SLEDVMAcrsKNEGafcpGYWFQIYLTADLERSVPLIKRAEEAGYQALVLTVDTPVLGNRINERKTPLVLPANLYLANIEKHKQVPTERKPSFnrrlmd 569
                 *****996542332567689*****************************************************99777777666666665555788989 PP

                 ......THHHH.HHCCCHB-TC--HH.HHHHHHHHHSSEEEEEEE-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCHHHHHHHH..SS-EEEES CS
      FMN_dh 186 ....kkasaaa.efvgkqldpsltwd.dikwlreqtklplvvKGvltaedakraveaGvdgivvSNHGGRqldgapatidvLpeiveavggrievlvDg 278
                     ++as+   +  g++ ++sltw+ ++  lr++t+l++++KG++++ da          ivvSNHGGRqld+ap+ti+vLp+i+ av+gri+v++Dg
  KKY20023.1 570 artaSEASNVIsQAGGSMHSSSLTWEsTVPFLRRTTSLKIILKGIMSPSDA----------IVVSNHGGRQLDSAPSTIEVLPSIATAVRGRIPVILDG 658
                 865422333225667778899*****77********************986..........9************************************* PP

                 S--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHCGGE CS
      FMN_dh 279 GirrGsDvlkAlalGAdavllGRpflyglaagGeeGvervleilraelertmallGvksvaeldrsll 346
                 GirrGsDv+kAlalGAd+vl+GRp+l+gla++G++Gvervl+il++el rtmal+Gv++v +++ +l+
  KKY20023.1 659 GIRRGSDVFKALALGADFVLVGRPVLWGLAYDGQQGVERVLQILERELARTMALAGVSRVVDVNGELV 726
                 ************************************************************99998776 PP

>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  376.3   3.6  8.5e-116  1.7e-112     142     462 .]       1     320 [.       1     320 [. 0.97

  Alignments for each domain:
  == domain 1  score: 376.3 bits;  conditional E-value: 8.5e-116
                 HHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SS..TCCHHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE-- CS
      Aldedh 142 laawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgs..gsevgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGG 238
                 ++a+k+apal aG+t+v+K a etp+sa +la+l eeag+Pkgv+n+vt     +e+g +l++++ v+k+sftGst+vg+ ++k+++++lk+++lElGG
  KKY20023.1   1 MMARKVAPALGAGCTCVIKSAGETPFSANALAKLGEEAGVPKGVINIVTALenTAEIGLTLCSSEIVRKISFTGSTRVGKLLMKQSSDTLKKLSLELGG 99 
                 789*********************************************76433899******************************************* PP

                 -EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE- CS
      Aldedh 239 knplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgdpldedtdvGPliseaqlekvekyveeakeegaklllG 337
                 ++++i+ +daDl++av++++++ f  +GQ+C++a+r++vq+++yd+f   l+ea++klkvg+++d++t+ GPl+ e++ +kv+++v++a+++ga++++G
  KKY20023.1 100 NAAFIIYDDADLQEAVTGVLASKFKVSGQTCVSANRIFVQDKVYDKFCGLLKEAVSKLKVGHGFDKSTTQGPLTAENSIAKVTEHVDDAVKKGATVVVG 198
                 *************************************************************************************************** PP

                 TTE.SB-SSST.TEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSE CS
      Aldedh 338 gereeaglekg.yfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealp 435
                 g   e+  + g +f++Pt+la+++++m+ia+eE+FGPV+ ++kf++eee+i+ aN+t++GLa++v+t+d+ r  r  e l+aG+v iN+  +++a + p
  KKY20023.1 199 G---EQLTSLGpNFFAPTILAGMRDEMKIAHEETFGPVAGLFKFSTEEEVIARANNTDVGLAGYVYTRDIGRSTRSYETLQAGMVAINSGVVSDAAS-P 293
                 *...44555555************************************************************************************9.* PP

                 B--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 436 fgGvkqSglGreggkegleeytevktv 462
                 fgGvk+Sg+Greg+k+g+ +y+e+ktv
  KKY20023.1 294 FGGVKHSGFGREGSKYGILDYMEMKTV 320
                 *************************98 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   9.8e-10   1.9e-06     201     237 ..     645     681 ..     632     686 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 9.8e-10
                 HHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 201 eaakkagvpviaDGGikysgdivkAlaaGadavmlGs 237
                 ++a +  +pvi DGGi+   d+ kAla+Gad+v++G+
  KKY20023.1 645 ATAVRGRIPVILDGGIRRGSDVFKALALGADFVLVGR 681
                 4555567*****************************7 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.4e-09   2.7e-06     109     223 ..     572     681 ..     517     711 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.4e-09
         NMO 109 vldekvevvsfgfglpteevvarlkeagvvliptissvkearkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavd..iPviAaGGiidr 205
                  + e  +v+s + g      +  ++++    +  ++s k + k + +  Da++v  ++ GG q + ++   ++++++p+++ av   iPvi  GGi ++
  KKY20023.1 572 TASEASNVISQAGGSMHSSSLTWESTV--PFLRRTTSLKIILKGIMSPSDAIVV--SNHGGRQLDSAP---STIEVLPSIATAVRgrIPVILDGGIRRG 663
                 455566666666666655555544443..4445677888888888888999999..5899*9997777...7*************************** PP

         NMO 206 rgvaaaLalGAsgvqigt 223
                  +v  aLalGA  v +g 
  KKY20023.1 664 SDVFKALALGADFVLVGR 681
                 ************999985 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.5e-08     3e-05     269     307 ..     646     684 ..     635     688 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.5e-08
                   TT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SHHHH CS
  Glu_synthase 269 eglrdrvsliadGglktgadvvkalalGAdavgigtaal 307
                   + +r r+ +i dGg++ g dv+kalalGAd+v +g+  l
    KKY20023.1 646 TAVRGRIPVILDGGIRRGSDVFKALALGADFVLVGRPVL 684
                   56899*****************************99776 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.2e-07   0.00024     228     295 .]     635     706 ..     613     706 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.2e-07
                 HHHHHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESH....HHHHHGTCHHHHHHHHHHHHH CS
      DHO_dh 228 dialkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvyt....alvfegpkiakkikkeleelL 295
                 +  ++v+ ++++ ++++ip+I  GGi  g D++  +  GA +v v+     +l ++g + ++++ + le++L
  KKY20023.1 635 PSTIEVLPSIATAVRGRIPVILDGGIRRGSDVFKALALGADFVLVGRpvlwGLAYDGQQGVERVLQILEREL 706
                 66899999***********************************99964444788999999999999888765 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.4   2.7e+03     120     150 ..     511     541 ..     495     543 .. 0.77
   2 !   18.1   0.1   6.7e-07    0.0013     168     204 ..     642     680 ..     609     685 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.4
                 HHTT-EEEEEE-S-HHHHHHHHHTT-SEBEE CS
        ThiG 120 vkeGFevlpYvsdDlvlarrleevGcaavmP 150
                  + G++ l+ + d +vl +r++e  +  v+P
  KKY20023.1 511 EEAGYQALVLTVDTPVLGNRINERKTPLVLP 541
                 5679999999999999999999987777776 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 6.7e-07
                 HHHHHH-..SS-BEEES---SHHHHHHHHHTT-SEEEES CS
        ThiG 168 kiiieea..kvPvivDAGigspsdaaqamelGadavlln 204
                   i   +  ++Pvi+D Gi++ sd+ +a+ lGad vl+ 
  KKY20023.1 642 PSIATAVrgRIPVILDGGIRRGSDVFKALALGADFVLVG 680
                 4555555558***************************96 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   5.4e-06     0.011      60     103 ..     636     681 ..     629     695 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.4e-06
                   HHHHHHHHHHHH-S..SEEEEESSSSSHHHHHHHHHCT-SEEEESH CS
  His_biosynth  60 anldlveeiaeevf..ipvqvGGGIrsledveelleagadkviigt 103
                     ++++  ia +v+  ipv ++GGIr+ +dv ++l +gad v +g 
    KKY20023.1 636 STIEVLPSIATAVRgrIPVILDGGIRRGSDVFKALALGADFVLVGR 681
                   5667777777777766************************999985 PP

>> G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.3   2.6e+03     151     166 ..     182     197 ..     165     202 .. 0.72
   2 ?   -3.1   0.0       2.2   4.4e+03     100     130 ..     412     442 ..     403     444 .. 0.83
   3 ?   11.1   0.0   9.9e-05       0.2     113     173 .]     631     685 ..     602     685 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.3
                   HHHHHHHCTT.SSEEE CS
  G3P_antiterm 151 kedveealkaGaiavs 166
                    e+v++a+k+Ga+ v 
    KKY20023.1 182 TEHVDDAVKKGATVVV 197
                   5677778888877775 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.2
                   -SHHHHHHHHHHHHHHT-SEEEEESGGGHHH CS
  G3P_antiterm 100 iDssalekalkqiekskpdavevlPglvpkv 130
                    D s+++++ + + k  p  + + P+ ++k+
    KKY20023.1 412 RDVSTVDTSTTILGKKYPIPIGIAPSAMQKL 442
                   5889999999999999999999999999886 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 9.9e-05
                   HHHT-SEEEEESGGGHHHHCTSTTS...EEEEESS--SHHHHHHHCTT.SSEEEE--HHHH CS
  G3P_antiterm 113 ekskpdavevlPglvpkvikeikkelkipiiaGGLietkedveealkaGaiavstsnkelW 173
                    +s p  +evlP+++  v        +ip+i  G i+  +dv +al+ Ga+ v ++++ lW
    KKY20023.1 631 LDSAPSTIEVLPSIATAVRG------RIPVILDGGIRRGSDVFKALALGADFVLVGRPVLW 685
                   458899******99865543......589999999**********************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.51
# Mc/sec: 4400.91
//
Query:       KKY20024.1  [L=877]
Description: putative flavin-containing amine [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-91  305.4   0.0      7e-91  304.8   0.0    1.2  1  FMN_dh         FMN-dependent dehydrogenase
    4.8e-51  174.5   0.0    6.1e-51  174.1   0.0    1.1  1  Amino_oxidase  Flavin containing amine oxidoreductase
    9.9e-14   51.4   0.0    1.8e-13   50.6   0.0    1.4  1  Ribonuc_L-PSP  Endoribonuclease L-PSP
    2.4e-12   46.9   0.4      9e-12   45.1   0.2    2.2  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    1.4e-06   27.7   1.6    2.4e-06   26.9   1.6    1.3  1  FAD_binding_2  FAD binding domain
    1.7e-06   27.9   0.0    4.6e-05   23.2   0.0    2.3  2  DAO            FAD dependent oxidoreductase
      2e-06   27.0   0.1    5.3e-06   25.7   0.1    1.6  1  IMPDH          IMP dehydrogenase / GMP reductase domain
      3e-06   26.8   0.7    4.8e-06   26.2   0.7    1.3  1  FAD_oxidored   FAD dependent oxidoreductase
    1.2e-05   24.7   0.8    2.4e-05   23.7   0.8    1.4  1  Thi4           Thi4 family
    0.00025   20.2   0.4     0.0086   15.2   1.1    2.1  2  Lycopene_cycl  Lycopene cyclase protein
    0.00025   20.3   0.1    0.00052   19.3   0.0    1.4  1  Glu_synthase   Conserved region in glutamate synthase
     0.0012   17.6   0.2     0.0067   15.2   0.3    1.9  2  HI0933_like    HI0933-like protein
     0.0012   18.1   0.5     0.0019   17.5   0.5    1.2  1  FAD_binding_3  FAD binding domain
     0.0039   16.5   0.0        1.8    7.8   0.0    2.4  2  ThiG           Thiazole biosynthesis protein ThiG
     0.0047   16.4   0.1      0.097   12.1   0.0    2.7  3  His_biosynth   Histidine biosynthesis protein
     0.0092   15.2   0.1      0.019   14.2   0.1    1.4  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
       0.06   11.8   0.1      0.087   11.2   0.1    1.1  1  FMO-like       Flavin-binding monooxygenase-like
       0.07   12.2   0.8       0.16   11.0   0.8    1.6  1  GIDA           Glucose inhibited division protein A
      0.099   12.6   0.1        6.5    6.7   0.1    2.7  2  NAD_binding_9  FAD-NAD(P)-binding
       0.15   11.3   0.4       0.96    8.6   0.1    2.1  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
       0.21   12.2   0.4       0.77   10.4   0.4    2.0  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.8   0.0   8.2e-94     7e-91      47     342 ..       2     296 ..       1     299 [. 0.93

  Alignments for each domain:
  == domain 1  score: 304.8 bits;  conditional E-value: 8.2e-94
                 B--EEETTEEESSSEEE--BSTGGGTSTTHHHHHHHHHHHHTS-EEEETT-SS-HHHHHHHHT.T-EEEEEE-CSSHHHHHHHHHHHHHC.......TE CS
      FMN_dh  47 dlsttllGqklslPvliaPvglaklahpdgelalaraaakagipfvlstvastsleevaaaae.gplwfqlyvpkdrelteellkraeaa.......gy 137
                 d+stt+l++k+s+P+++aP+++++lah+dgela+ raaak+gip++ls +a+ s e+v ++ + +p ++q+ + ++re++ ell rae         gy
  KKY20024.1   2 DISTTFLDTKVSAPFGFAPAAMHRLAHRDGELATSRAAAKMGIPMGLSAYATESCEDVISQGGdNPYIIQINFLEKREIMSELLSRAETRvsghveaGY 100
                 89********************************************************9964426**********************9755555555** PP

                 SEEEEESSTSS---BHHHHHCT--BSTT-T.G.TTGGGSTSGSCCTTH..THHHHHHCCCHB-TC--HHH.HHHHHHHHSSEEEEEEE-SHHHHHHHHH CS
      FMN_dh 138 kalvltvDtpvlgkRerdlrngfslppklklrnllqelakpewaaealkkasaaaefvgkqldpsltwdd.ikwlreqtklplvvKGvltaedakrave 235
                 ka++ltvD+pv g R ++ rn+f lp++l++ nll   +  + + +               ++   +w++  + +r++tklp+++KG+ ta+d+ +a++
  KKY20024.1 101 KAVFLTVDVPVFGIRMNEYRNSFGLPKGLTWPNLLPGQDMSDLNRSDD----------PLAYECGAEWEEaAAFVRSNTKLPVWLKGIYTADDVALAIK 189
                 ****************************99999888887777777766..........223355789*964899************************* PP

                 TTESEEEE--GGGTSSTT---HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
      FMN_dh 236 aGvdgivvSNHGGRqldgapatidvLpeiveavggrievlvDgGirrGsDvlkAlalGAdavllGRpflyglaagGeeGvervleilraelertmallG 334
                 +G dg+v+SNHGGRqldg+pat+d+L e++  + g+i++ +DgGirrG+D++kAlalGAd+++lGR  ++gla++G+eGve +++il +el+ +m + G
  KKY20024.1 190 HGFDGVVISNHGGRQLDGVPATLDALRECAPVAMGKIPIAIDGGIRRGTDIFKALALGADFCFLGRIPIWGLAYNGQEGVELAVHILIKELKVAMGISG 288
                 *************************************************************************************************** PP

                 -SBHHHHH CS
      FMN_dh 335 vksvaeld 342
                  +s + ++
  KKY20024.1 289 STSPQTIH 296
                 **998875 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.1   0.0   7.1e-54   6.1e-51       1     451 [.     423     865 ..     423     866 .. 0.81

  Alignments for each domain:
  == domain 1  score: 174.1 bits;  conditional E-value: 7.1e-54
                    HHHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEET.T.EEEESS--EEET.TTHHHHHHHHHTTCCCCEEEESCCGCEEEEETTEECCTTEECHH CS
  Amino_oxidase   1 laGLaaArqLlsaGfdVtvlEardrvGGRirtvrsd.G.ylielGamwftg.agnpllellkelgledslslpdpgapkrvlskggrefpgdlspv 93 
                    l+GLaaAr    aG++++vlEardrvGG+ ++ +   G  +++lGa w+++ +++ + +l+k+++ e+  + +  g++ + ++      +g+++++
     KKY20024.1 423 LSGLAAARDVIKAGLSCVVLEARDRVGGKTWSQKVTdGkGVVDLGAAWINDtNQSRMIALAKQIDAELIEQ-NTIGNAMFQDF------DGKVHSF 511
                    79********************************997469***********************99997555.22223344444......5555555 PP

                    .HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH....HHHCCCCHHHHHHHHHCHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHCHTSTTTT CS
  Amino_oxidase  94 .paewealleqgalsaellsleeklrlgleall....qktldeldldskslaesleelgrrepgdvev..wdrliepelfaklefasglfagdpse 182
                     ++ ++++   ++      +  + +r  +ea++    + +++  d ds ++++ l ++g++     ++  w+r ++    ++    s+l++ +   
     KKY20024.1 512 pYGDLPKFDGATR------ENIAYIRDLVEAECqkldSFAPQNIDYDSLTFEAFLVKSGANKYARETAatWTRAMLG---QEPRDISALYFMNY-- 596
                    3333444444222......2355555555555544443335555556666666666666555555444668888886...77778889999865.. PP

                    CBHHHHTCCCCHHHHHTSCCCEETTHTHHHHHHHHHTTTTEEEETSEEEEEEEEETTC.EEEEETTSTEEEESEEEE-S-HHHHHSSEEESCCSHH CS
  Amino_oxidase 183 lsaklalpllwelegfggslllprgGlsqlpealaeelrgldirlntrVkeikregdg.vtvtledgevveaDaVvvTvplgvlkailfsPplpde 277
                      a+  l + + + ++gg+ l++r G ++  e la+ l++++i ++t+V +++++++  v++t ++g+++ a++V++ vp ++lk i+f+P+lp+ 
     KKY20024.1 597 CKAGGGLLQMRSDRKHGGQFLRVRLGTQTFSEGLAAALPKGTIITSTPVQSVTQHPHQpVAITSSSGRTFLAKKVILSVPGPCLKSITFTPSLPES 692
                    8999999***********************************************99988************************************* PP

                    HHHHHHHSEEEEEEEEEEEESSGGSGCSTSECECECCCEEETTTEEEEECCECCCSTTTEEEEEEEEECHHHHHHHTTS-HHHHHHHHHHHHHHHH CS
  Amino_oxidase 278 kaeairnlgfgsvnkvilefdrkfwednalgqgvlvseltttlgeafissdfpsrappgkglvllvyvggdaaneleslsdeelvqavlrdLrklf 373
                     +  + +l +g  +k+ l f+++fw  ++   g + s + +    + +s++  s     k  +l+ ++ggd ++ +  lsd e+++ +l+++++lf
     KKY20024.1 693 TTVLFSSLTYGYYTKAMLVFKTPFWTTHGY-CGLSQSFKGPAGVIRDTSIP--SD---NKY-ALTCFLGGDPGRAWSHLSDPERLDSLLQQVAQLF 781
                    ***************************874.44577888888888888855..22...223.69*******************************9 PP

                    T......GTSSTCSEEEEEECCTETTT..SSSEEE.BTTHHHHHHHHHHCHHCSTTEEE.SGGGCTTTTTSHHHHHHHHHHHHHHH CS
  Amino_oxidase 374 g......eevpepkatlvtrWhtdpla..rgsysyvsvgpghedydplakpegdprlffAGehtsreypgtvegAilSGlraAari 451
                           +  ++ +++    W++d++a  +   ++ ++g  ++  d+l kp  ++ l+f G  t+  + g++egA+++G r Aa++
     KKY20024.1 782 TpnndldSVKQNFIEIMAYEWTKDEFAgwGCPCTALPPGILTTSGDALGKP--VGDLHFIGTETAGVWKGYMEGALRTGERGAAEV 865
                    999999888889999************544445556666666777777777..******************************998 PP

>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   2.1e-16   1.8e-13      19     119 ..     293     391 ..     287     393 .. 0.87

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 2.1e-16
                    TEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSST..S--EEEEEE-SBSG.GG- CS
  Ribonuc_L-PSP  19 nlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelk..eaParsaveVaaLp.kga 111
                    ++++vsGq+++   +g++ ++d e q + al nl+++L a+g++++d+ k+t ++++ +     n+ +++++++    ++Pa ++v V++L+ +++
     KKY20024.1 293 QTIHVSGQVGSL-GSGTV-PTDYESQIHLALLNLRRILVASGTTVEDISKLTLYIVNYDA---KNRLHTRHIQKFLgsHRPAITLVPVQQLAaPEW 383
                    799*******98.46665.************************************99877...66666666666633489**************** PP

                    SEEEEEEE CS
  Ribonuc_L-PSP 112 kvEIeaia 119
                    ++EI+a++
     KKY20024.1 384 LFEIDAVI 391
                    *****997 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.2   1.1e-14     9e-12       1      64 [.     418     482 ..     418     486 .. 0.88
   2 ?   -2.4   0.0       6.7   5.7e+03      35      53 ..     606     627 ..     601     631 .. 0.72

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 1.1e-14
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE.TT.CEECTS---EEETTHHHHCHHH CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev.pg.vrvdygahifhgsgyypnvrrl 64 
                    +vGaGlsGl+aA+   kag+++++le+rdr+GG+  s +v +g  +vd+ga ++++++ + ++ +l
     KKY20024.1 418 VVGAGLSGLAAARDVIKAGLSCVVLEARDRVGGKTWSQKVtDGkGVVDLGAAWINDTN-QSRMIAL 482
                    8************************************99974569***********74.6666555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.7
                    G-EECETT...CEECTS---EE CS
  NAD_binding_8  35 aasyevpg...vrvdygahifh 53 
                    ++s + +g    rv +g ++f 
     KKY20024.1 606 MRSDRKHGgqfLRVRLGTQTFS 627
                    5566554447899999999996 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   1.6   2.8e-09   2.4e-06       1      38 [.     415     452 ..     415     460 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 2.8e-09
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGG CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggat 38 
                    Dv+V+G+Gl+GLaAA    +aGl+++v+e  +++gg t
     KKY20024.1 415 DVLVVGAGLSGLAAARDVIKAGLSCVVLEARDRVGGKT 452
                    9********************************99976 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   5.4e-08   4.6e-05       1      38 [.     415     453 ..     415     555 .. 0.91
   2 ?    2.2   0.0      0.13   1.1e+02     263     299 ..     750     787 ..     623     806 .. 0.63

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 5.4e-08
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGG CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSg 38 
                 dv+++G+G  Gl++A++  ++g   ++le++d++g g ++
  KKY20024.1 415 DVLVVGAGLSGLAAARDVIKAGlsCVVLEARDRVG-GKTW 453
                 8**********************************.8776 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.13
                 EEE.EESSEEETTCSSTSCSHHHHHHHHHHHHHHS.GG..G CS
         DAO 263 vlv.Ggtadeesgdddpevdeedidellealrklf.Pq..l 299
                 +++ Gg+  + +++ +   d+e++d ll+++++lf P+  l
  KKY20024.1 750 TCFlGGD--PGRAWSH-LSDPERLDSLLQQVAQLFtPNndL 787
                 4543776..4677777.999**************9766432 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.1   6.2e-09   5.3e-06     192     238 ..     211     256 ..     178     260 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 6.2e-09
                 HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 192 qltAvaevaeaakkagvpviaDGGikysgdivkAlaaGadavmlGsl 238
                  l A+ e+a +a   ++p+  DGGi+   di kAla+Gad++ lG++
  KKY20024.1 211 TLDALRECAPVAMG-KIPIAIDGGIRRGTDIFKALALGADFCFLGRI 256
                 46788888888764.6*****************************85 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.7   5.6e-09   4.8e-06       1      43 [.     415     457 ..     415     504 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 5.6e-09
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglv 43 
                   Dv+VvG+g++G+aAA    +aG + +++e r+++GG + s+ v
    KKY20024.1 415 DVLVVGAGLSGLAAARDVIKAGLSCVVLEARDRVGGKTWSQKV 457
                   9***********************************9987765 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.8   2.8e-08   2.4e-05      17      59 ..     413     454 ..     409     470 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2.8e-08
                 EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTT CS
        Thi4  17 esDvvivGaGssGLtaayylakkpdlkvailersvspGGGawl 59 
                 + Dv++vGaG sGL+aa+ + k+ +l  ++le++  +GG +w 
  KKY20024.1 413 VYDVLVVGAGLSGLAAARDVIKA-GLSCVVLEARDRVGGKTWS 454
                 57*********************.******************6 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.1     1e-05    0.0086       1      51 [.     415     460 ..     415     474 .. 0.89
   2 ?    2.0   0.0     0.098        84      86     140 ..     623     676 ..     606     697 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1e-05
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieaspsllfpnnyvWsdefedl 51 
                    Dv+v+GaG+ gl+ A  +   k+gl+ v++ea + +   + ++Ws   +d 
     KKY20024.1 415 DVLVVGAGLSGLAAARDV--IKAGLSCVVLEARDRV---GGKTWSQKVTDG 460
                    9*****************..9*************99...889999887775 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.098
  Lycopene_cycl  86 skrlkeellerlvengvklleakvesveeeeageslvvleggrkirarlvvdarg 140
                     + + e l+  l+ +g + ++  v+sv++++   + ++ + gr+  a+ v+ + +
     KKY20024.1 623 TQTFSEGLAAALP-KGTIITSTPVQSVTQHPHQPVAITSSSGRTFLAKKVILSVP 676
                    5678888888888.89999*************99****************99887 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   6.1e-07   0.00052     274     307 ..     225     258 ..     195     262 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 6.1e-07
                   G-EEEEESS--SHHHHHHHHHHT-SEEE-SHHHH CS
  Glu_synthase 274 rvsliadGglktgadvvkalalGAdavgigtaal 307
                   ++ + +dGg++ g+d++kalalGAd+  +g++++
    KKY20024.1 225 KIPIAIDGGIRRGTDIFKALALGADFCFLGRIPI 258
                   7899***********************9999876 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.3   7.8e-06    0.0067       1      38 [.     414     451 ..     414     466 .. 0.94
   2 ?   -0.4   0.0      0.42   3.6e+02     125     164 ..     638     677 ..     625     689 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.8e-06
                  -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HH CS
  HI0933_like   1 kdviviGgGaAGlmaAisaakrgkrVlllekakklgrK 38 
                  +dv+v+G+G +Gl aA  + k+g + ++le+ +++g K
   KKY20024.1 414 YDVLVVGAGLSGLAAARDVIKAGLSCVVLEARDRVGGK 451
                  59*********************************998 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.42
                  EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE---- CS
  HI0933_like 125 klrletevksvekeedgkfrvktkseeeleadklvlAtGG 164
                  ++ ++t v+sv+++ ++ + ++ +s++++ a+k++l++ G
   KKY20024.1 638 TIITSTPVQSVTQHPHQPVAITSSSGRTFLAKKVILSVPG 677
                  688999***********9***999************9866 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.5   2.2e-06    0.0019       2      34 ..     414     446 ..     413     454 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.2e-06
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrs 34 
                    +dVl+VGaG++Gl +a+   +aG ++v++e r+
     KKY20024.1 414 YDVLVVGAGLSGLAAARDVIKAGLSCVVLEARD 446
                    69****************************986 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0076       6.5     160     204 ..     155     198 ..     148     206 .. 0.86
   2 !    7.8   0.0    0.0021       1.8     175     202 ..     225     252 ..     209     255 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0076
                 --S-HHHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEES CS
        ThiG 160 GllnkealkiiieeakvPvivDAGigspsdaaqamelGadavlln 204
                 G + +ea  ++++++k+Pv +  Gi ++ d+a a++ G+d+v++ 
  KKY20024.1 155 GAEWEEAAAFVRSNTKLPVWLK-GIYTADDVALAIKHGFDGVVIS 198
                 666677778899999***9985.*******************985 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0021
                 SS-BEEES---SHHHHHHHHHTT-SEEE CS
        ThiG 175 kvPvivDAGigspsdaaqamelGadavl 202
                 k+P+ +D Gi++ +d+ +a+ lGad ++
  KKY20024.1 225 KIPIAIDGGIRRGTDIFKALALGADFCF 252
                 89**********************9765 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.57   4.8e+02      69     102 ..     166     198 ..     154     222 .. 0.68
   2 !   12.1   0.0   0.00011     0.097      71     102 ..     223     254 ..     204     259 .. 0.76
   3 ?   -1.2   0.0       1.3   1.1e+03      72     101 ..     413     442 ..     403     446 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.57
                   HHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEES CS
  His_biosynth  69 aeevfipvqvGGGIrsledveelleagadkviig 102
                   ++++++pv++  GI + +dv+ +++ g d v+i+
    KKY20024.1 166 RSNTKLPVWLK-GIYTADDVALAIKHGFDGVVIS 198
                   44555555554.5666666666666666666665 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00011
                   H-SSEEEEESSSSSHHHHHHHHHCT-SEEEES CS
  His_biosynth  71 evfipvqvGGGIrsledveelleagadkviig 102
                     +ip+ ++GGIr+  d+ ++l +gad + +g
    KKY20024.1 223 MGKIPIAIDGGIRRGTDIFKALALGADFCFLG 254
                   336************************98887 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.3
                   -SSEEEEESSSSSHHHHHHHHHCT-SEEEE CS
  His_biosynth  72 vfipvqvGGGIrsledveelleagadkvii 101
                   v   + vG G + l +++++++ag + v++
    KKY20024.1 413 VYDVLVVGAGLSGLAAARDVIKAGLSCVVL 442
                   555688******************999886 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   2.2e-05     0.019       1      45 [.     414     457 ..     401     489 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.2e-05
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllska 45 
                  +dv+v+G+G  Glaaa+++ +ag+  +++ + +  ++g+ + +k+
   KKY20024.1 414 YDVLVVGAGLSGLAAARDVIKAGLSCVVL-EARDRVGGKTWSQKV 457
                  46666666666666666666666666666.444455555544444 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1    0.0001     0.087       4      51 ..     416     462 ..     413     479 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
    FMO-like   4 vaviGaGvsGlasikccleegleptcfersddiGGlwrfkenveeGra 51 
                 v v+GaG+sGla+ +  ++ gl  + +e  d +GG   ++++v +G+ 
  KKY20024.1 416 VLVVGAGLSGLAAARDVIKAGLSCVVLEARDRVGGK-TWSQKVTDGKG 462
                 789*******************************95.34566666654 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.8   0.00018      0.16       1      28 [.     415     442 ..     415     464 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
                 CEEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLi 28 
                 dv V+G+G++G++AA  + ++G++ + +
  KKY20024.1 415 DVLVVGAGLSGLAAARDVIKAGLSCVVL 442
                 79********************998877 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0076       6.5       2      45 ..     418     456 ..     417     461 .. 0.85
   2 ?    2.7   0.0      0.13   1.2e+02     108     152 ..     631     674 ..     608     677 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0076
  NAD_binding_9   2 ivGaGprGlavlerLlarakkkspleitlfdpsep.gagrvwrtd 45 
                    +vGaG +Gla+++ +++       l+  + + +   g g+ w+++
     KKY20024.1 418 VVGAGLSGLAAARDVIKA-----GLSCVVLEARDRvG-GKTWSQK 456
                    8***************99.....59999999966636.9999886 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.13
  NAD_binding_9 108 larlpegvtvevhraevvdleeradg.qavlladgaslaadaVvLA 152
                    +a+lp+g+   + ++ v ++++++ + +a++ ++g+++ a++V+L 
     KKY20024.1 631 AAALPKGT--IITSTPVQSVTQHPHQpVAITSSSGRTFLAKKVILS 674
                    44445553..3446789999999988459999************97 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1    0.0011      0.96       1      30 [.     417     445 ..     417     454 .. 0.89
   2 ?    0.0   0.0      0.47     4e+02      98     131 ..     639     674 ..     631     675 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0011
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkg 30 
                  +++GaG  Glaaa  + kagl + ++lE  
   KKY20024.1 417 LVVGAGLSGLAAARDVIKAGL-SCVVLEAR 445
                  69*******************.799***86 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.47
  Pyr_redox_3  98 iklfeeVesvkkedeg.fevetske.tyeAkkviiA 131
                  i + + V+sv+++ ++   +++s++ t+ Akkvi++
   KKY20024.1 639 IITSTPVQSVTQHPHQpVAITSSSGrTFLAKKVILS 674
                  778999******755527777777679******986 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4    0.0009      0.77       2      43 ..     416     454 ..     415     463 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0009
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHH CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeas 43 
                 v+vvG+G++gl +A    + g +  v+e++d++    +++ s
  KKY20024.1 416 VLVVGAGLSGLAAARDVIKAGLSCVVLEARDRVG---GKTWS 454
                 89******************************99...44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (877 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.38
# Mc/sec: 6852.57
//
Query:       KKY20025.1  [L=302]
Description: putative alpha beta hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-05   24.9   0.0       0.11   12.1   0.0    2.2  2  Abhydrolase_1  alpha/beta hydrolase fold
    5.3e-05   22.6   0.0       0.28   10.4   0.0    2.2  2  Hydrolase_4    Serine aminopeptidase, S33
    0.00019   22.1   0.0       0.34   11.5   0.0    2.1  2  Abhydrolase_6  Alpha/beta hydrolase family
     0.0084   15.6   0.0      0.014   14.8   0.0    1.3  1  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.011   15.3   0.0      0.019   14.5   0.0    1.3  1  DLH            Dienelactone hydrolase family
        0.1   12.7   0.0       0.18   11.9   0.0    1.3  1  Abhydrolase_4  TAP-like protein


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   3.8e-05      0.11      29      79 ..      90     139 ..      70     140 .. 0.82
   2 !   10.7   0.0   9.9e-05      0.29     180     256 ..     186     281 ..     150     282 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.8e-05
                    TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTT...SSEEEEE CS
  Abhydrolase_1  29 gfdvillDlrGvgySspapacinddygtasvaddldrildalgd...dkltlvG 79 
                    +++ +++D rG g+S+++      +y+t  +a+d   +l++ g+   ++l+++G
     KKY20025.1  90 EYTSLIYDNRGMGESDKPG----IRYTTSEMAKDTLELLEHVGWtgkRQLHVIG 139
                    78999**************....57*************9997651115666666 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 9.9e-05
                    HHHHHHHHHHHHHHHCCHHHHHHHHHC.................THHHHS.EEEEEEETTCSSSCHHHHHHHHHCHTS.EEEEEEETCSSSHHHHS CS
  Abhydrolase_1 180 slatgalksieqwpttdsaklllrlre.................lknvla.ptlvisgtsDplvppkaledlaqllpk.krlvvisdagHlafleg 256
                    +++++a++ i   +++d + + ++l +                 ++++    ++v++gt+D++++  ++e la+ l + ++ +v+++ gH +++e+
     KKY20025.1 186 NGDRVAALEIHKRSDKDGFTRKGFLLQaiaanwhykspahlkelGDEIGRdRIMVVHGTKDNMITFPHGEILAKELGEgVEFKVFEGRGHALCIEE 281
                    44444444444444444444444444466667777776664444444444899*************99*****999999*************9986 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   9.4e-05      0.28      30      76 ..      89     134 ..      78     141 .. 0.79
   2 !   10.2   0.0   0.00011      0.33     193     238 ..     237     281 ..     183     282 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 9.4e-05
  Hydrolase_4  30 qGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpel 76 
                   ++  +++D+rG G+s+ k g    ++++ +D  +++e+v  + +++
   KKY20025.1  89 SEYTSLIYDNRGMGESD-KPGIRYTTSEMAKDTLELLEHVGWTGKRQ 134
                  678999**********5.5555669999*****99999998555444 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00011
  Hydrolase_4 193 PllllhGeaDkvvdpeasrelyerlgskdktlklypglyHellnEp 238
                   ++++hG++D+ +     + l+++lg   +++k+++g  H l  E+
   KKY20025.1 237 RIMVVHGTKDNMITFPHGEILAKELGE-GVEFKVFEGRGHALCIEE 281
                  589***********************6.*************99885 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00011      0.34       6      71 ..      66     139 ..      53     140 .. 0.70
   2 !    8.9   0.0   0.00069       2.1     160     219 ..     220     287 ..     141     288 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
                    -GC.....GC..HHHH..HHHHCCTCEEEEE--TTSTS-GGCS--HHH...CHHHHHHHCCTT...TTSEEEEE CS
  Abhydrolase_6   6 GagssassWl..vapL..aallaagvhvlapDlpGhGrsdpppldled...ladlaalldelaa.gggpvvlvG 71 
                    G+g+ +++W+  + ++   + +a+ ++ l++D +G+G+sd p   ++    + d ++ll++++  g ++ +++G
     KKY20025.1  66 GLGTFKTAWQrqTKHFchEEPRASEYTSLIYDNRGMGESDKPGIRYTTsemAKDTLELLEHVGWtGKRQLHVIG 139
                    4667788884446688876666777999*********9988887777744567778888888777777778887 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00069
                    HTTCCHHTT-TTGC.....EEE.CTT-CHHHHCHHCCCH...STTEEETCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 160 llpaaawadlpvpl.....lvl.ggeDplvprllerlla...qagarlpvvlpgaGHlphleepdevae 219
                    + ++a+++ l   +     +v+ g++D ++     ++la    +g+++ +v++g GH++ +ee de+++
     KKY20025.1 220 YKSPAHLKELGDEIgrdriMVVhGTKDNMITFPHGEILAkelGEGVEF-KVFEGRGHALCIEERDEFNR 287
                    334444444444447777666657999955533445555533388888.********999999999986 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.8e-06     0.014     143     189 ..     235     278 ..     210     297 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.8e-06
                   --EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTT CS
  Peptidase_S9 143 ypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvg 189
                     +++++hG++D+ +++ +++ l+++L   g+ v++++f + gH + 
    KKY20025.1 235 RDRIMVVHGTKDNMITFPHGEILAKEL---GEGVEFKVFEGRGHALC 278
                   5689********************999...67999*********554 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   6.3e-06     0.019     143     198 ..     234     286 ..     208     296 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.3e-06
         DLH 143 ikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsresyn 198
                     i++++g++D++i++ + e l+++l   +  +e+kv++g gHa   ++r+++n
  KKY20025.1 234 GRDRIMVVHGTKDNMITFPHGEILAKEL---GEGVEFKVFEGRGHALCIEERDEFN 286
                 45679**********************9...8899***********9999998776 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.1e-05      0.18      16      91 ..     216     293 ..     208     298 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.1e-05
  Abhydrolase_4  16 agwpvspqrprdesta.kgaapvLllqnerDpaTPyegakklakalggavlvtv.egeGHgalaagntCvdkavdaYL 91 
                    a+w +++ +  +e  +  g  +++++ ++ D++  +  ++ lak+lg++v + v eg GH   +++ +  ++++++++
     KKY20025.1 216 ANWHYKSPAHLKELGDeIGRDRIMVVHGTKDNMITFPHGEILAKELGEGVEFKVfEGRGHALCIEERDEFNRLLENFV 293
                    567777777777777524579***************************9998773666**998877666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2553.67
//
Query:       KKY20026.1  [L=875]
Description: putative fungal specific transcription factor domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-26   91.9   0.1    8.6e-26   90.6   0.0    1.7  2  Fungal_trans  Fungal specific transcription factor domain
    5.1e-10   39.3  13.3    1.1e-09   38.2  13.3    1.6  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.0   9.5e-30   8.6e-26       1     266 [.     305     549 ..     305     550 .. 0.86
   2 ?   -2.6   0.1      0.25   2.2e+03       7      37 ..     580     607 ..     576     619 .. 0.78

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 9.5e-30
  Fungal_trans   1 ldrffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeili.....hedfsspssslw 92 
                   l+ ff+nf++ fp++h+p+f++    e+  +++ ++    +a + ++   ++     sn   ++e q+      +++ l      +++++  +++l 
    KKY20026.1 305 LKDFFENFNCMFPLFHEPTFMHLV--ERQYSKDPYEGSGWWASMNVALAIAHRLRVMSNLVPKEEDQK------AWMYLKnamgvLTELTLRNTDLL 393
                   567********************9..777777777777788888889999998888888888887755......344444444558*********** PP

  Fungal_trans  93 ilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcdd 189
                   ++q+Ll + ++++++ +      ++  a+rla+s+gLh++ s  +      l   e e+r+R++w a+ lDk ++l  Grpp+ dd+++n++LP +d
    KKY20026.1 394 TVQALLGMGMFLQGTPNPQPSFFLIAAALRLAHSIGLHKRGSGFN------LNQVEVEQRKRVFWIAYTLDKDLCLRSGRPPMQDDDDMNVELPSED 484
                   *****************999999********************99......99999***************************************99 PP

  Fungal_trans 190 ddlwesddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlqseklswveeleraldnWr 266
                      ++  +    + ++         ++ +  + +++ i sk+++ +l+  k ++q+d +   l+ + el+r+l++W+
    KKY20026.1 485 P-PDNIGNIPLADGKG--------KVNLFRLMCTFATISSKVYK-CLYSTKASKQTDGE--LLNTIGELDRELEEWK 549
                   9.44444444444444........56788888999999999999.88889999999999..9**************8 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.25
  Fungal_trans   7 nfhpqfpilhkpsflpktssenssksayasp 37 
                   + +++++ +h++s+++ +  ++s+ s+ya +
    KKY20026.1 580 Y-YNCLTTIHRMSVHHGY--WTSRLSNYAIQ 607
                   3.579999******9999..77776666655 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2  13.3   1.3e-13   1.1e-09       1      39 [.      69     107 ..      69     108 .. 0.91

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 1.3e-13
                 SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus   1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39 
                 +aCd CrkkK+KCd+k P+Cs+C+ + ++C+f +  +kr
  KKY20026.1  69 RACDMCRKKKIKCDGKMPKCSHCVNYKTDCVFTQVEKKR 107
                 69*****************************77777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (875 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       953  (0.0531541); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:00.49
# Mc/sec: 5381.15
//
Query:       KKY20027.1  [L=936]
Description: putative mitochondrial inner membrane aaa protease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-66  222.4   0.2    1.2e-65  221.0   0.0    1.8  2  Peptidase_M41  Peptidase family M41
    9.7e-43  145.8   0.1    3.2e-42  144.1   0.0    2.0  2  AAA            ATPase family associated with various cellular
    1.2e-12   47.4   0.1    3.8e-12   45.8   0.1    1.9  1  AAA_lid_3      AAA+ lid domain
    2.9e-07   30.8   0.0    7.8e-07   29.4   0.0    1.8  1  FtsH_ext       FtsH Extracellular
    0.00047   20.2   0.3     0.0036   17.3   0.0    2.6  2  AAA_5          AAA domain (dynein-related subfamily)
     0.0048   16.1   0.4      0.013   14.7   0.0    1.8  2  TIP49          TIP49 P-loop domain
     0.0071   16.6   0.1        1.2    9.4   0.1    3.2  3  AAA_22         AAA domain
  ------ inclusion threshold ------
       0.01   16.3   2.1       0.28   11.5   0.2    3.0  2  AAA_16         AAA ATPase domain
      0.012   15.3   0.0      0.033   13.9   0.0    1.7  1  RuvB_N         Holliday junction DNA helicase RuvB P-loop dom
      0.022   14.9   0.1       0.12   12.5   0.0    2.2  2  AAA_2          AAA domain (Cdc48 subfamily)
      0.026   14.3   0.0       0.09   12.5   0.0    1.9  1  IstB_IS21      IstB-like ATP binding protein
      0.035   14.5   1.9       0.16   12.4   0.0    2.7  2  AAA_17         AAA domain
      0.066   13.0   0.1        2.9    7.8   0.0    2.6  2  DUF3368        Domain of unknown function (DUF3368)
       0.68   10.1   2.4       0.77    9.9   0.0    2.4  3  AAA_33         AAA domain


Domain annotation for each model (and alignments):
>> Peptidase_M41  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       3.2   4.2e+03      76     101 ..     105     130 ..      78     147 .. 0.56
   2 !  221.0   0.0     9e-69   1.2e-65       2     190 ..     672     854 ..     671     855 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.2
                    HHHHHHS-BGGGHHHHHHHHHHHHHH CS
  Peptidase_M41  76 EelifgevttGasnDlekatkiarkm 101
                    E++  ++  t  s+Dl+++ +++ +m
     KKY20027.1 105 EQVRSESQHTIMSEDLHRVEELVAHM 130
                    33333333333344444444444333 PP

  == domain 2  score: 221.0 bits;  conditional E-value: 9e-69
                    X--HHHHHHHHHHHHHHHHHHCCSSS-S-B--EES--TTS.-----------..TSS--BHHHHHHHHHHHHHHHHHHHHHHHS-BGGGHHHHHHH CS
  Peptidase_M41   2 visekekklvAyHEaGHalvglllkeadpveKvtiiPRgq.alGltlslPee..dklsltkeellarlavllGGraaEelifgevttGasnDleka 94 
                    v++ +ekk+vAyHEaGHa++g++ k adp+ Kv+iiPRgq alG++++lP    d + ++ ++l++r+a++lGGr++Eel f++vt+Gas+D++k+
     KKY20027.1 672 VLTPEEKKTVAYHEAGHAICGWYFKYADPLLKVSIIPRGQgALGYAQYLPAGggDVYLMNVRQLMDRMAMTLGGRVSEELWFDTVTSGASDDFNKV 767
                    6889**********************************************86226667************************************** PP

                    HHHHHHHHHTS---TTT-S--------..----.------SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEE-HHHHHH CS
  Peptidase_M41  95 tkiarkmvtefGmsdklGpvsleeeeeeevflgkelkkekelseetaeeideevkelveeayerakeileekreelealaeaLlekEtldaeeiee 190
                    t++a++mvte+Gms+k+G +s++++e+         + +k++seeta++id+ev+++v+eay++++++leekre++  +ae+Ll+kE+l ++++ +
     KKY20027.1 768 TRMATAMVTEWGMSSKIGYLSYKDDEQ---------RLHKPFSEETARNIDSEVRRIVDEAYKQCRNLLEEKREQVGMVAEELLKKEMLVRDDLVR 854
                    *********************999776.........2469**************************************************999876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.1   0.0   2.5e-45   3.2e-42       2     131 ..     456     588 ..     455     589 .. 0.96
   2 ?   -3.0   0.0         7     9e+03      63      81 ..     815     833 ..     779     848 .. 0.58

  Alignments for each domain:
  == domain 1  score: 144.1 bits;  conditional E-value: 2.5e-45
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH....TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr....sgseseeeervvnqLlteldgv 96 
                 +l+GppGtGKTllaka a e+gv+f+++sgse+++++vg +++++r+lf++a+++  p+i+fiDEida++ksr     g+ ++e+e ++nq+lte+dg+
  KKY20027.1 456 ILSGPPGTGKTLLAKATAGESGVPFFSVSGSEFVEMFVGVGASRVRDLFANARKST-PCIIFIDEIDAIGKSRskqnFGGGNDEREATLNQILTEMDGF 553
                 79***************************************************997.****************98877789****************** PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 +++e+ v+v++ tnrpd ld+al+r gRfdr+i i+
  KKY20027.1 554 NTSEQ-VVVLAGTNRPDVLDRALMRpGRFDRHISID 588
                 **866.***************************987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7
                 EEETGGGHHHHHTTCCCHH CS
         AAA  63 fiDEidalaksrsgsesee 81 
                 ++DE+++ +++  ++++e+
  KKY20027.1 815 IVDEAYKQCRNLLEEKREQ 833
                 4555555555553333333 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.1   2.9e-15   3.8e-12       6      45 .]     618     657 ..     609     657 .. 0.92

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 2.9e-15
   AAA_lid_3   6 eLAerTeGySGADlaalcreAallAlrrgikeitmedfee 45 
                 +L ++T+G+SGAD+a+ ++eAal A r +  e+tm++fe+
  KKY20027.1 618 RLSALTPGFSGADIANCVNEAALIAARASASEVTMQHFEA 657
                 5889**********************************96 PP

>> FtsH_ext  FtsH Extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   6.1e-10   7.8e-07       9     107 ..     252     352 ..     247     354 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 6.1e-10
    FtsH_ext   9 llllllllslfggsgtgstkeisyseFl.edleqgnvekvvvqestis.alirrptgdgvsttkkgnstttystptlgsvesleekLeealkskgvdve 105
                 ++ ll ++++  ++ +++ ++i+++eF+ +  ++g vek +v + ++  + +rr         +   ++  y+++t+gsve++e+kL+ea k++g+ ++
  KKY20027.1 252 ISTLLSWYLYKSLFPGETKRDITWQEFRtTFFDKGLVEKLTVINHNRVrVELRREAVQQMYPESPAANPQFYYYFTIGSVEAFERKLDEAHKELGIPSS 350
                 33333444443399999**********99**************8888875555555555556666666777799999*******************998 PP

    FtsH_ext 106 ss 107
                  +
  KKY20027.1 351 ER 352
                 76 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.8e-06    0.0036       3     130 ..     456     571 ..     454     578 .. 0.75
   2 ?   -1.4   0.1       1.7   2.1e+03      72     107 ..     810     845 ..     803     858 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.8e-06
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--.HHHHHHHHHHHHSSEEE..- CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEverae.sevlnsLlslleerrlllee 98 
                 +L GppGtgK+ la+  a   + +++ v ++++ +    +g  ++           l  +ar  +++i+++DE++ +  s   + +    +er+  l++
  KKY20027.1 456 ILSGPPGTGKTLLAKATAGESGVPFFSVSGSEFVEMFVGVGASRV---------RDLFANARksTPCIIFIDEIDAIGkSRSKQNFGGGNDEREATLNQ 545
                 89******************************8865555555554.........555556666899*********999555566666777778888887 PP

                 SSSEEE---......-EEEEEESS--.-TT-T CS
       AAA_5  99 ggelvkaknddllerfrviatanpldrslnel 130
                   ++++  n+   e++ v+a +n++d     l
  KKY20027.1 546 ILTEMDGFNT--SEQVVVLAGTNRPD----VL 571
                 7777777664..46688888888887....44 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.7
                 ESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE--- CS
       AAA_5  72 DEveraesevlnsLlslleerrllleeggelvkakn 107
                  Ev r+ +e+ +   +llee+r ++    e+  +k+
  KKY20027.1 810 SEVRRIVDEAYKQCRNLLEEKREQVGMVAEELLKKE 845
                 5899999999999999****9999888887776665 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       1.1   1.4e+03     209     249 ..     115     154 ..      97     163 .. 0.73
   2 !   14.7   0.0     1e-05     0.013      51      89 ..     453     489 ..     406     514 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.1
                 --S---S----XXXXXXXXXXXXXXXXXXXXXXXX....XX CS
       TIP49 209 lPkGevekkkevvqevtLhdlDvanarpqdllslllqllks 249
                 + + ++++  e+v ++  h +  ++a++ d l +l  + ++
  KKY20027.1 115 IMSEDLHRVEELVAHMKKHAISESQAKTLDALVIL-AKRRG 154
                 55668899999999999999999999999988888.34444 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevy 89 
                 r+ +l+Gp+gtGkt la a + e g  vpf ++sgse+ 
  KKY20027.1 453 RGAILSGPPGTGKTLLAKATAGESG--VPFFSVSGSEFV 489
                 7889*****************9977..*********975 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       7.6   9.8e+03      12      26 ..     396     410 ..     395     432 .. 0.74
   2 !    9.4   0.1   0.00095       1.2       9      24 ..     456     471 ..     452     483 .. 0.88
   3 ?    3.2   0.0     0.076        97      83     130 ..     501     565 ..     495     569 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 7.6
      AAA_22  12 GesGtGKTtllrrll 26 
                 G  G+GK++  +  +
  KKY20027.1 396 GIFGIGKSRAKKFNH 410
                 67799***9765544 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00095
      AAA_22   9 vvtGesGtGKTtllrr 24 
                 ++ G++GtGKT+l++ 
  KKY20027.1 456 ILSGPPGTGKTLLAKA 471
                 799**********997 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.076
      AAA_22  83 eqalrarav..ielliiDEaqhlr...s...........eealeeLrsllnl.srkgvqliLvGt 130
                 ++ + ++++  + ++ iDE++ +    s           e+ l+++ + ++  +++   ++L+Gt
  KKY20027.1 501 RDLFANARKstPCIIFIDEIDAIGksrSkqnfgggnderEATLNQILTEMDGfNTSEQVVVLAGT 565
                 444444455567899*******9876515667777766666666664444434577777778777 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00022      0.28      21      45 ..     449     473 ..     442     488 .. 0.82
   2 ?    2.7   0.0      0.11   1.4e+02     123     147 ..     500     523 ..     493     551 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00022
      AAA_16  21 sgrpelvllsGesGvGKsslvrell 45 
                 +  p+  +lsG++G+GK+ l+++ +
  KKY20027.1 449 AKIPRGAILSGPPGTGKTLLAKATA 473
                 55578999************98765 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.11
      AAA_16 123 lkrllallsrderplvlvlDdlqwa 147
                 +++l+a +++ + p ++++D+++ +
  KKY20027.1 500 VRDLFANARK-STPCIIFIDEIDAI 523
                 5566677777.999*******9954 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.6e-05     0.033      37      96 ..     456     523 ..     445     531 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.6e-05
      RuvB_N  37 llyGpPGlGkttlakiiakelgvklkitsgPvl.ek.....agdlaalltnleekd..vlfideihrl 96 
                 +l+GpPG Gkt lak  a e gv + + sg    e      a+ +  l++n +++   ++fidei  +
  KKY20027.1 456 ILSGPPGTGKTLLAKATAGESGVPFFSVSGSEFvEMfvgvgASRVRDLFANARKSTpcIIFIDEIDAI 523
                 89**********************99999875313211111222333344433332238888888765 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       3.5   4.5e+03     114     164 ..     105     159 ..      91     165 .. 0.57
   2 ?   12.5   0.0   9.2e-05      0.12       7      83 ..     456     526 ..     453     552 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.5
                 --EE-TT-EEEEEE--TTHHHHTTTS-S....TTTTSGGG--HHHHHHTT--HHH CS
       AAA_2 114 rkvdtknilfImtgafgsskisdesrsk....eeeeekkkeeveeelkkglipEl 164
                 ++v+ +    Im+  ++  ++  ++ +k    e+++++ +  v  + ++gl+pEl
  KKY20027.1 105 EQVRSESQHTIMSEDLHRVEELVAHMKKhaisESQAKTLDALVILAKRRGLTPEL 159
                 4555555556666666666555544444455455555556666666666777766 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 9.2e-05
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT.-HHHHTTSEEEEETGGG---- CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappg.yvgaeegGivllDEidKihpk 83 
                 +l gp g+Gkt+laka+a    v    ++  +  se+ e   +   v    +   + + ++    i+++DEid i ++
  KKY20027.1 456 ILSGPPGTGKTLLAKATAGESGV----PFFSVSGSEFVE---MFVGVGASRVRDLFaNARKSTPCIIFIDEIDAIGKS 526
                 5789*****************98....************...44444444444433033444445********99995 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.1e-05      0.09      11      71 ..     406     476 ..     401     530 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.1e-05
   IstB_IS21  11 aklpaqktledidfraarsldkrkvkeLatlsfiekkeni...........vllGpsGvGKshlaialgvea 71 
                  k++++ ++ +i+f+   ++d++kv+ +   +f+++ e +           +l Gp+G+GK+ la a + e 
  KKY20027.1 406 KKFNHETDI-KIKFSDVAGMDEAKVEIMEFVEFLKNPEKFqklgakiprgaILSGPPGTGKTLLAKATAGES 476
                 566666666.7788888888888888888888887766432223333333399*************987665 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   1.7       1.8   2.3e+03      43      93 ..     112     160 ..      95     221 .. 0.51
   2 ?   12.4   0.0   0.00012      0.16       2      74 ..     459     532 ..     458     586 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.8
                 HHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEESSH CS
      AAA_17  43 rdemrklpleekkelqkeaaekiaeeakkkgvlvdghprikeqagfldglp 93 
                 ++ ++ ++l + +el + ++++   e++ k   +d    + +++g+ ++l+
  KKY20027.1 112 QHTIMSEDLHRVEELVAHMKKHAISESQAK--TLDALVILAKRRGLTPELK 160
                 556666666666666666666655554332..3344444444444444444 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00012
                 E-TTSSHHHHHHHHHHHHTEEEEEH.HHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEE CS
      AAA_17   2 GgPGsGKgtqceklvekygfthlsa.Gdllreeakrgglakardemrklpleekkelqkeaaekiaeeakkkgv 74 
                 G+PG GK+ +++  + + g++++s  G+ + e+    g+++ rd ++++ ++  + +    +++i + ++k+++
  KKY20027.1 459 GPPGTGKTLLAKATAGESGVPFFSVsGSEFVEMFVGVGASRVRDLFANARKSTPCIIFIDEIDAIGKSRSKQNF 532
                 9**********************9889***********999999999999999988887777888887777766 PP

>> DUF3368  Domain of unknown function (DUF3368)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0022       2.9       7      24 ..     146     163 ..     145     170 .. 0.90
   2 ?    2.3   0.0      0.11   1.4e+02      19      38 ..     731     751 ..     728     752 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0022
     DUF3368   7 iLllAKqrGlIpsvkpll 24 
                 +++lAK+rGl p++k+ l
  KKY20027.1 146 LVILAKRRGLTPELKEML 163
                 899************988 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.11
     DUF3368  19 svkplldaL.iqaGfrispkl 38 
                 +v++l+d++    G r+s++l
  KKY20027.1 731 NVRQLMDRMaMTLGGRVSEEL 751
                 79****************998 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       5.6   7.1e+03      45      74 ..      83     115 ..      66     126 .. 0.61
   2 ?   -3.5   0.3       8.4   1.1e+04     108     128 ..     197     217 ..     194     226 .. 0.74
   3 ?    9.9   0.0    0.0006      0.77       3      32 ..     456     487 ..     455     531 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.6
      AAA_33  45 ktdytrvldr...lyqilnelarkalsagrnvi 74 
                 +t ++++++    + + ++ +a++++s+ +++i
  KKY20027.1  83 PTSQKHARNPeksTLEETKHRAEQVRSESQHTI 115
                 334444433323366666677777777776666 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 8.4
      AAA_33 108 eetlkeRlakRaangddrsev 128
                 ee++ke  + R ++gd++ + 
  KKY20027.1 197 EEVIKEEQEHRRESGDADPDT 217
                 899999999999999765333 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.0006
      AAA_33   3 llvGlpGsGKstlaerllkklg..avllssdt 32 
                 +l G+pG+GK+ la+  + + g  ++ +s  +
  KKY20027.1 456 ILSGPPGTGKTLLAKATAGESGvpFFSVSGSE 487
                 678*************9999987666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (936 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1416  (0.0789782); expected 358.6 (0.02)
Passed bias filter:                      760  (0.0423894); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.00u 0.32s 00:00:01.32 Elapsed: 00:00:00.53
# Mc/sec: 5361.38
//
Query:       KKY20028.1  [L=560]
Description: putative dna topoisomerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-79  266.4   0.0    3.2e-72  243.8   0.0    3.1  2  Topoisom_bac  DNA topoisomerase
    2.8e-13   50.0   0.1    1.1e-12   48.1   0.0    2.1  2  Toprim        Toprim domain


Domain annotation for each model (and alignments):
>> Topoisom_bac  DNA topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   7.2e-07    0.0065       3      41 ..     112     156 ..     110     158 .. 0.77
   2 !  243.8   0.0   3.6e-76   3.2e-72      83     383 ..     160     467 ..     151     518 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.2e-07
  Topoisom_bac   3 nenlvdaaeaRrelDwliGinlsrlltkklkg......kkvlsaG 41 
                   ++ +++a+ aR elD++iG++++rl+t +l+       +kv+s+G
    KKY20028.1 112 DDLQANAVYARIELDLRIGAAFTRLQTMQLQTmvpdmaSKVISYG 156
                   67789**********************955533333446677766 PP

  == domain 2  score: 243.8 bits;  conditional E-value: 3.6e-76
  Topoisom_bac  83 kkkkkkerikdkeeaeaileklkkk.eakvesvekkekkkppplpfdtttLqkeasrklglsakktlsiaqkLYekaglitYpRTdstrlseeaelk 178
                   ++ +k+++++d+  +  ++e++    +akv++v+kk ++k++plp++t++Lq + sr l+++++++++ a++LY++ g+i+YpRT+++++++  +l+
    KKY20028.1 160 NFLWKRSHLFDRATVVILFEQCLVAkTAKVTKVQKKATSKWRPLPLTTVELQMQGSRFLRMTSAQIMKHAESLYNS-GWISYPRTETDQFDDAIDLR 255
                   5789******************8855*************************************************7.****************77** PP

  Topoisom_bac 179 ailealakkygkeylefaekllkktkkks.vvknkkveaHeAIrPteelpklkels.ddekklYelIvrrflaslmkdakyeettvkleveeeefka 273
                   a+++++++   +++ ++a+ ll ++  ++  +++ +++aH++I+P++ ++  ++ls   ++k+Ye+Ivrrfla++++dak e t ++++ ++e f++
    KKY20028.1 256 ALIRKQTQS--QTWGDYATGLLDNGGFQTpRRGRHNDKAHPPIHPVNYVDP-SALSdVGQRKIYEFIVRRFLACCSEDAKGEATDIEIRYGDEFFRT 349
                   ****99996..679999999998765444655556669********99985.6666467788*********************************** PP

  Topoisom_bac 274 sgktilekGfkkvykeekkeeeeeelpelkegeevkvkeveleekkTkppkryteasLikamekagiGtpaTraeiieklvergYverk.......k 363
                    g  ++ ++++ +y ++k+e + ++lp+++ ge++   e++++e+kT++p+++te +Li++m+ +giGt+aT+ae+i ++++r+Yv  +        
    KKY20028.1 350 HGLLVTARNYLDIYVYDKWESS-QQLPPFELGETFVPAEANITEGKTSAPSYLTEPELIALMDANGIGTDATMAEHIANIKTREYVSTRsssgsrnA 445
                   **************88888887.49*************************************************************87655555545 PP

  Topoisom_bac 364 .kslvptelGkalvellekf.k 383
                    ++++pt+lG al++++e + +
    KKY20028.1 446 vQEFIPTTLGVALIQGYESIlS 467
                   678**************86533 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   1.2e-16   1.1e-12      25     103 .]       1      96 [.       1      96 [. 0.92
   2 ?   -3.7   0.0       1.6   1.4e+04      69      84 ..     326     341 ..     321     348 .. 0.78

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 1.2e-16
                 EEEESSSSEEEHS..............TTEEEEE..ECTTTHHHHHHHHHHHHHHSEEEEECSSSHHHHHHHHHHHHHHTHHHTT.TEEEEEESSS CS
      Toprim  25 vtaslGhildlet..............efkpvye..eiedkkkvlkalkelakradeiilatDpDreGeaiawellevlkellen.kigrvefsei 103
                 +t++lGh++++++               f+++++  +++d + v + ++++a+ a+ ++++tD+DreGe+i+ e+++ +++++++ +++r++f++i
  KKY20028.1   1 MTSVLGHLTEIDFdqnhrkwhscppgaLFDANLItaVKQDVRAVADNIAQQARYAKILFIWTDCDREGENIGAEIRTEARKGNPRiEVKRAVFNNI 96 
                 799**********999998888888887777777889*******************************************99999********987 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.6
                 ECSSSHHHHHHHHHHH CS
      Toprim  69 atDpDreGeaiawell 84 
                 ++  D  Gea+  e++
  KKY20028.1 326 CCSEDAKGEATDIEIR 341
                 6788999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.56
# Mc/sec: 3029.07
//
Query:       KKY20029.1  [L=350]
Description: hypothetical protein UCRPC4_g04294 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-36  124.4   7.7      7e-36  123.9   7.7    1.1  1  DUF1295   Protein of unknown function (DUF1295)
  ------ inclusion threshold ------
        0.2   12.1   1.7        2.2    8.8   0.0    2.8  3  ICMT      Isoprenylcysteine carboxyl methyltransferase (ICMT)


Domain annotation for each model (and alignments):
>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.9   7.7   7.8e-40     7e-36       3     235 .]      70     329 ..      68     329 .. 0.83

  Alignments for each domain:
  == domain 1  score: 123.9 bits;  conditional E-value: 7.8e-40
     DUF1295   3 lislltkssslvDvlwgvlfvilavltlll..sea.aklrrllvllLvvlWglRLalhllrr.tlkkg.eDkryeelrkelgkt.iallsllvvfvlQa 95 
                 l+s + +++s+vD++w++l++++ ++ ++    ++ ++ r   +l+  v+W+ RL++++ r+  +  g eD+r+e lrk++++      ++l++ ++Q 
  KKY20029.1  70 LLSEINRNYSQVDRVWSILPTVFNIHYVAWahLHNlDTKRLDALLAASVIWSFRLTYNYWRKgGYSVGsEDYRWEILRKHIPAPlFFAFNVLFISLAQS 168
                 6788999****************9988776565665777778899999**************9999999*************985555567778889** PP

     DUF1295  96 vllylvalpvllaaaskeeq........alkaldviglalwlvgivlealaDqQlsaf....................kkdpankgk.vldsGLwrysR 165
                 vll+ ++ p+++    ++ +            ld++ +  ++  ++l ++aD+Q++++                    + d+    + +l++GL+ +sR
  KKY20029.1 169 VLLWSITTPTYILLLRSRLAqsgkntpaDYDGLDMLFSRFLVALVLLTYIADNQQWHYqtikqnykssaklpsdskfsQIDL---ERgFLTKGLFGWSR 264
                 **********987553322223423334556667776666777778899************************995444444...4449********** PP

     DUF1295 166 HPNYfgealiWwglflialealeglealaiagpllltlllvfvsgipllEkkalkkykdkeeyreYqkkt 235
                 HPN+ +e+ +W+ l++ a+ ++e+  +++ +g   + +l++f++++  +E  + kky   ++y+ Yqkk+
  KKY20029.1 265 HPNFAAEQSFWVTLYIWAAVKSETPFNWTAIG--AVSYLILFQASTWFTESVSAKKY---PDYKVYQKKV 329
                 *******************99999999****9..4567888888899***9999999...8******996 PP

>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       1.7   1.5e+04      65      76 ..      52      63 ..      43      74 .. 0.46
   2 ?    1.6   0.1     0.042   3.8e+02      13      87 ..     110     189 ..     104     193 .. 0.72
   3 ?    8.8   0.0   0.00024       2.2      36      51 ..     255     270 ..     247     309 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.7
        ICMT 65 nakltalvllal 76
                n+ + a+ + ++
  KKY20029.1 52 NPLVFAFAFALF 63
                443333333222 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.042
        ICMT  13 lvvmatlGeiwttrvai...lpdhklvksglyky...lrHPnYllfvilelatllLlcnakltalvllalvalllfvRike 87 
                 l ++  +  iw+ r++    +++   v s  y++    +H    lf++ ++  ++L+ +  l+  + ++ ++lll +R+ +
  KKY20029.1 110 LDALLAASVIWSFRLTYnywRKGGYSVGSEDYRWeilRKHIPAPLFFAFNVLFISLAQSV-LLWSITTPTYILLLRSRLAQ 189
                 556777778888888877778888888888888744347855566688888888887777.66667777777777788765 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00024
        ICMT  36 vksglykylrHPnYll 51 
                  ++gl+ + rHPn+++
  KKY20029.1 255 LTKGLFGWSRHPNFAA 270
                 689**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.50
# Mc/sec: 2118.97
//
Query:       KKY20068.1  [L=776]
Description: hypothetical protein UCRPC4_g04257 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-27   95.9  19.3    2.6e-27   95.9  19.3    2.8  2  Choline_transpo  Plasma-membrane choline transporter


Domain annotation for each model (and alignments):
>> Choline_transpo  Plasma-membrane choline transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   4.4     0.072   1.3e+03     283     312 ..     316     352 ..     284     385 .. 0.50
   2 !   95.9  19.3   1.5e-31   2.6e-27       4     322 ..     403     738 ..     401     741 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.072
  Choline_transpo 283 e.......elnsplvpllvvfiiayliasiflsvyes 312
                              +l++ +++llv  ++++++a + l+ +++
       KKY20068.1 316 PlgdtvytTLHASFYLLLVDTVVSIFVALFWLAALRA 352
                      1444444444444444444444444444444433333 PP

  == domain 2  score: 95.9 bits;  conditional E-value: 1.5e-31
  Choline_transpo   4 livavllllllivlrkrirlaiallkvaskaiksnpslllvplltllllllvsafwivvavalylassgestdkvnsgsesglaavefessskv 97 
                      +i+a l+++  i  r+ ++ aia+l+ a++++++np ll v +++l+++++ +++w+v + +++l +  ++t+          a v f +++++
       KKY20068.1 403 AIIATLWIFSAIQARRSLHKAIAILEFATRILGENPALLGVGFALLFAIVASTWLWLVMFTRVFLGGHLSTTT----------AVVRFVIDAST 486
                      68999***********************************************************888877763..........4578999**** PP

  Choline_transpo  98 kalllyllfgllWtleflralqqvtvagavasWYfskkkdlp.skfp...vlkslkraltyhlGSialgSlilaivqllrlileylekklkkke 187
                      ++l +++++++lWtl +l+++q+ +++++v++WYf+ + ++p ++ +   v ++ ++++t+ +G+i l+ l+  +++l+ l+l +         
       KKY20068.1 487 WWLGVFFILMYLWTLMVLSGVQRSITSATVSQWYFH-RLAVPqPT-SvavVQAAASHSTTTMFGTISLSTLLRLLIRLPLLVLPR--------- 569
                      ************************************.33333222.145699*****************************9997......... PP

  Choline_transpo 188 navakcllcclkcclwclekflkflnrnayimvaiyGksFcesakdafellkrnglrvavld............................svvd 253
                        +a++l  +   +  +   +   +n  ++++ +i++++   sa++  +l +  + + +++                              + +
       KKY20068.1 570 -RFATILTAV--TFTLIPSPVAALINPLSLTYASIHSQPLSVSARSLSQLSFLSPDDPTTSLhpntfssrqhhgdgwsydrsstsslkpyRLAK 660
                      .345554444..233457778889**************************99999855333346788888888888888888888777777*** PP

  Choline_transpo 254 fvlflgkllialltgliaylllkatltnpe.........elnsplvpllvvfiiayliasiflsvyesavdtifvcfa 322
                      ++l+ ++l+ +l+ ++ +++  +++++ ++            ++++++l+++ i++ i+s +  v+ ++vd+  vc+ 
       KKY20068.1 661 LLLYSSRLITSLALAYGGWVTAARQIRLKApddptstvrGSLYAYIIALIAGAIGWGILSAMEGVLANIVDACVVCWG 738
                      **********************9999998899*******6666669******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.52
# Mc/sec: 4497.04
//
Query:       KKY20069.1  [L=284]
Description: hypothetical protein UCRPC4_g04258 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-07   30.5   0.0    6.6e-07   29.9   0.0    1.3  1  4HBT_2     Thioesterase-like superfamily
  ------ inclusion threshold ------
      0.031   14.6   3.3       0.06   13.7   3.3    1.5  1  kleA_kleC  Uncharacterized KorC regulated protein A


Domain annotation for each model (and alignments):
>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   7.3e-11   6.6e-07       5      91 ..      42     150 ..      39     193 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 7.3e-11
      4HBT_2   5 dvDlnghlnnarylryleearvkfle............rtglksrsiarr..........giglilssahvryrrplkfpdrltvefrvididaktlii 81 
                 ++D+n h  n++y++ l++ r k +             r +++ +s+  +          + + il++ h+++r+++ +   + v++rv  +d ++++i
  KKY20069.1  42 ETDYNLHKSNSTYFSDLDISRSKVMGrllaavwplsdiRVEVRADSNDPNsemklqkvkgRAATILGAVHTTFRKEIAPYASYNVQSRVLSWDNRWIYI 140
                 579*******************9998666677776666434433333322566666666667************************************* PP

      4HBT_2  82 ehrflsnadg 91 
                   +fl++a+ 
  KKY20069.1 141 GTWFLKPASK 150
                 ******8744 PP

>> kleA_kleC  Uncharacterized KorC regulated protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   3.3   6.7e-06      0.06      30      74 ..     211     255 ..     204     257 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.7e-06
   kleA_kleC  30 laeAeeLvrqaeeLRakvyeesaaLedrakkrWtleeveqAkarA 74 
                 ++eA++++++a++L a++    ++  +   + Wt eeve+ + r 
  KKY20069.1 211 VQEAADMTQRAARLVADATSSTSSEANANEEEWTWEEVEKERLRG 255
                 689************************************988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2031.33
//
Query:       KKY20070.1  [L=272]
Description: putative secretion related gtpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-49  165.7   0.1    3.7e-38  130.7   0.0    2.1  2  Ras          Ras family
    9.8e-30  103.2   0.0      6e-19   68.4   0.0    2.2  2  Roc          Ras of Complex, Roc, domain of DAPkinase
    9.8e-11   41.4   0.0    6.5e-10   38.7   0.0    2.0  2  Arf          ADP-ribosylation factor family
    8.9e-09   35.2   0.0    3.5e-08   33.2   0.0    1.8  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    6.5e-05   23.0   0.1    0.00031   20.8   0.0    2.1  2  MMR_HSR1     50S ribosome-binding GTPase
    6.5e-05   22.4   0.0    0.00015   21.2   0.0    1.6  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
     0.0036   17.2   0.0       0.38   10.6   0.0    2.2  2  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.088   13.1   0.1       0.55   10.5   0.1    2.1  2  AAA_22       AAA domain
        0.2   11.1   0.0        7.1    6.0   0.0    2.0  2  SQS_PSY      Squalene/phytoene synthase


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   1.6e-11   3.2e-08       1      44 [.      10      53 ..      10      67 .. 0.88
   2 !  130.7   0.0   1.8e-41   3.7e-38      43     161 ..      92     220 ..      68     221 .. 0.96

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 1.6e-11
                EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEET CS
         Ras  1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievd 44
                Klv +Gds++GK+sl++r  +++F+ +++ Tigv+f ++ ++v 
  KKY20070.1 10 KLVCIGDSGTGKSSLTVRLCEGRFTPTHDVTIGVEFGSRIVSVG 53
                89**********************************99999876 PP

  == domain 2  score: 130.7 bits;  conditional E-value: 1.8e-41
                 ETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG.........G-SS-HHHHHHHHH CS
         Ras  43 vdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDlee.........kravsteegeelak 132
                  ++k++kl++wDTAGqe +ks++++y+r+a+g+llv+dit++++f++v++w+++++++aee + +vLvGnK+Dl++         +rav++ee+ee+++
  KKY20070.1  92 QKQKKMKLSLWDTAGQETYKSITRSYFRGASGALLVFDITRKATFNSVTQWLHDLRQIAEEGIIVVLVGNKSDLAStsidaqggnRRAVTKEEAEEWCR 190
                 5789*********************************************************************************************** PP

                 HHT.SEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 133 elg.lkfletSAktnenveeafeellreil 161
                  ++ ++++etSAk+ e+ve af e++++i+
  KKY20070.1 191 ANDvMEYVETSAKSGEGVERAFLEVAERIY 220
                 ***99*********************9987 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   3.4e-11   6.7e-08       1      40 [.      10      49 ..      10      58 .. 0.92
   2 !   68.4   0.0     3e-22     6e-19      49     119 ..      90     164 ..      64     165 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 3.4e-11
                EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEE CS
         Roc  1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltke 40
                K+v++Gdsg+GK+sl  r++e++f+++++ tigv+f ++ 
  KKY20070.1 10 KLVCIGDSGTGKSSLTVRLCEGRFTPTHDVTIGVEFGSRI 49
                89**********************************8764 PP

  == domain 2  score: 68.4 bits;  conditional E-value: 3e-22
                 TBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHHHHHHHHHHHCSSS.-EEEEEE-TT CS
         Roc  49 ndkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlkeWlkelkkvagks.pvilvgnkiD 119
                 +++k+kk+kl++WDtaGqe ++s++++y+r+a+ a+lv+d   + +++++ +Wl++l++ a++  +v+lvgnk D
  KKY20070.1  90 SSQKQKKMKLSLWDTAGQETYKSITRSYFRGASGALLVFDitrKATFNSVTQWLHDLRQIAEEGiIVVLVGNKSD 164
                 4566789*********************************7544467999**********998626779****99 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.32   6.4e+02      15      42 ..       9      36 ..       4      47 .. 0.79
   2 !   38.7   0.0   3.3e-13   6.5e-10      54     173 ..      93     217 ..      84     219 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.32
                EEEEEEESTTSSHHHHHHHHHHSSCEEC CS
         Arf 15 lrilllGLDnaGKtTilkklkleelvtt 42
                ++++ +G  ++GK+ +  +l +++++ t
  KKY20070.1  9 AKLVCIGDSGTGKSSLTVRLCEGRFTPT 36
                689999999***********99987643 PP

  == domain 2  score: 38.7 bits;  conditional E-value: 3.3e-13
                 EETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGG......SS CS
         Arf  54 eiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellglee......lk 146
                 + k++k+++wD  Gqe+ +++ ++Yf+   + + v D + +  +++  + L+ l +  e + +++++++NK Dl+++  +++  +  ++++       +
  KKY20070.1  93 KQKKMKLSLWDTAGQETYKSITRSYFRGASGALLVFDITRKATFNSVTQWLHDLRQIAE-EGIIVVLVGNKSDLASTSIDAQGGNRRAVTKeeaeewCR 190
                 5799*************************************************988877.67888889******8765554433333333323455577 PP

                 SSSSEEEEEEBTTTTBTHHHHHHHHHH CS
         Arf 147 gkrkleiqkcsavkgeglkeglewlse 173
                 ++  +e +++sa +geg++ ++  ++e
  KKY20070.1 191 ANDVMEYVETSAKSGEGVERAFLEVAE 217
                 9999**************999876665 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   1.7e-11   3.5e-08       5     187 ..      10     215 ..       6     224 .. 0.72

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.7e-11
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH...HHHST.................HCHSHHHHHHTSCSSCEEEEEE.......TTCSSEEEEEEE CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgeka...eeerv.................lDtlkeErergiTiksaaisle.......ketkkylinliD 76 
                 +++ ig+  +GK++Lt rL +  g+ +  + ++   e   +                  D     + +g   +s+ +          +++kk +++l D
  KKY20070.1  10 KLVCIGDSGTGKSSLTVRLCE--GRFTPTHDVTigvE---FgsrivsvgppasldlgiNDPKTFSKTNGDAQSSSDAASPrpsspssQKQKKMKLSLWD 103
                 567788888888888888884..44444445553231...23444777887777777644444555555555544444446777775699********* PP

                 ESSSGGGHHHHHHHHHT-SEEEEEEETTTB....STHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEE CS
    GTP_EFTU  77 tPGHvdFskevirglrvlDgavlvvdaveG....vepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvv 171
                 t G + + + +    r + ga+lv+d+++       +q    lr++ +eg+ ++++ NK D + ++++ +  + +      +e+ e+    + + ++ v
  KKY20070.1 104 TAGQETYKSITRSYFRGASGALLVFDITRKatfnSVTQWLHDLRQIAEEGIIVVLVGNKSDLASTSIDAQGGNRRAVT---KEEAEEWCRAN-DVMEYV 198
                 *********99999**************8844333444455679999****************999999999999777...45554444444.5899** PP

                 EEBTTTTBTHHH.HHHH CS
    GTP_EFTU 172 fgSalkgegvkt.llea 187
                  +Sa++gegv+  +le+
  KKY20070.1 199 ETSAKSGEGVERaFLEV 215
                 *********99635554 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.5e-07   0.00031       2     111 ..      11     159 ..      10     162 .. 0.67
   2 ?   -2.0   0.0       1.9   3.8e+03      59      74 ..     201     216 ..     166     234 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.5e-07
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE............................................EEEEECGGC CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke............................................ielvDtpGl 56 
                  +++G + +GKS+L  +l++   + + ++ +T+ +++g   ++  +                                            + l+Dt+G 
  KKY20070.1  11 LVCIGDSGTGKSSLTVRLCEG--RFTPTHDVTIGVEFGSRIVSVGPpasldlgindpktfsktngdaqsssdaasprpsspssqkqkkmkLSLWDTAG- 106
                 5789***************95..6688888999998886432211124455555556667777777777888888888888888888888********. PP

                 SSHHHHHHHHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHHHHHHHHH..TTSEEEEE CS
    MMR_HSR1  57 iegaseekglgkaflaleeadlillvvdas.eeklkpldeeleellee..akkplilv 111
                  e   + k++++++ +   a+ +llv+d++ +++++ + + l++l++   +++ ++lv
  KKY20070.1 107 QE---TYKSITRSYFR--GASGALLVFDITrKATFNSVTQWLHDLRQIaeEGIIVVLV 159
                 55...67799999995..5889999**9995334444444444433222134444445 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHHHHHH CS
    MMR_HSR1  59 gaseekglgkaflale 74 
                 +a++++g+++afl++ 
  KKY20070.1 201 SAKSGEGVERAFLEVA 216
                 4556667777777654 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   7.6e-08   0.00015       2     142 ..      11     184 ..      10     219 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 7.6e-08
   Gtr1_RagA   2 vLLmGksgsGKtsmrsiiFdn.ylardtlrlgati.......................................dveksevrflgnltlnlwDcgGqea 60 
                 ++ +G sg GK+s+   + +  +++++ +++g+                                         + +  + +  ++++l+lwD  Gqe+
  KKY20070.1  11 LVCIGDSGTGKSSLTVRLCEGrFTPTHDVTIGVEFgsrivsvgppasldlgindpktfsktngdaqsssdaaspRPSSPSSQKQKKMKLSLWDTAGQET 109
                 56677777777777776665425566666666655667777777777777777777777777777777777777444444556799***********99 PP

   Gtr1_RagA  61 fveeylssqkeeifrnvgvliyVfDvesreleedletlkeilealrqyspeakvfvli.hKmDliqedereeifeerkeeire 142
                 +   +      + fr  +  + VfD++    + ++++ ++ l+ lrq+ +e  + vl+ +K Dl + +  ++  ++r+ + +e
  KKY20070.1 110 YKSIT-----RSYFRGASGALLVFDIT---RKATFNSVTQWLHDLRQIAEEGIIVVLVgNKSDLASTSIDAQGGNRRAVTKEE 184
                 87664.....677888888889*****...788999999***************9*99789**99876655554444433333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00019      0.38     103     130 ..      12      39 ..       7      48 .. 0.80
   2 ?    4.6   0.0     0.014        28      20      90 ..     125     208 ..     107     221 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00019
                  EEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpelelktgev 130
                  v +G SG GKS+L  +l +   + t++v
   KKY20070.1  12 VCIGDSGTGKSSLTVRLCEGRFTPTHDV 39 
                  789***********99988766666666 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.014
                  EEEEESTTTT--HHHHHHH...HHHHHHTT-EEEEEEE-GGG--HHH..........HHHHHHHHHHHTT.SEEEE--TTTHTTH CS
  RsgA_GTPase  20 livvslkepelslnlldrf...LvlaeekgiepvivlnKiDlleeee..........eleelkeelealg.yevllvsaktkegl 90 
                  l+v+ ++  + + n +++    L ++ e+gi +v+v nK Dl++++           + ee +e  +a + +e + +sak++eg+
   KKY20070.1 125 LLVFDIT-RKATFNSVTQWlhdLRQIAEEGIIVVLVGNKSDLASTSIdaqggnrravTKEEAEEWCRANDvMEYVETSAKSGEGV 208
                  5566655.4555555555511145778999************9987756666655443333333333333234555555555555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00028      0.55       8      26 ..      11      29 ..       9      58 .. 0.87
   2 ?   -0.1   0.0      0.53   1.1e+03     110     131 ..     141     162 ..      90     167 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00028
      AAA_22  8 lvvtGesGtGKTtllrrll 26
                lv++G sGtGK+ l  rl 
  KKY20070.1 11 LVCIGDSGTGKSSLTVRLC 29
                79**********9988875 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.53
      AAA_22 110 eeLrsllnlsrkgvqliLvGtp 131
                 ++L++l  +++ g+ ++LvG  
  KKY20070.1 141 QWLHDLRQIAEEGIIVVLVGNK 162
                 4455555556688888888876 PP

>> SQS_PSY  Squalene/phytoene synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0036       7.1      40     118 ..      89     190 ..      80     198 .. 0.81
   2 ?    3.3   0.0     0.025        50     232     256 ..     210     234 ..     190     239 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0036
                 --........------------....................---------THHHHHHHHHHHT--HHHHHHHHHHTS--SS-...........--SHH CS
     SQS_PSY  40 vseplqararldwwrdavdavya.................e.dklkpprepvlralaqlirtyklpkellleliegmeadlef.........tryetld 111
                 +s+++q++++l+ w  a +++y+                 + +  k+ ++ v ++l++l    ++ +e    ++ g ++dl           +r +t +
  KKY20070.1  89 PSSQKQKKMKLSLWDTAGQETYKsitrsyfrgasgallvfDiT-RKATFNSVTQWLHDL---RQIAEEGIIVVLVGNKSDLAStsidaqggnRRAVTKE 183
                 568899****************999988888776665555352.589999999999999...7899999999999999999965556666646677999 PP

                 HHHHHHH CS
     SQS_PSY 112 dLeeYcy 118
                 + ee c+
  KKY20070.1 184 EAEEWCR 190
                 9998886 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHHHHHTTT-TTT-- CS
     SQS_PSY 232 llavalyrailerieaadydvlsrr 256
                 ++ ++++++i +riea +yd+ +rr
  KKY20070.1 210 RAFLEVAERIYQRIEAGKYDLNDRR 234
                 78899***************65555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1894.46
//
Query:       KKY20071.1  [L=170]
Description: hypothetical protein UCRPC4_g04260 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1103.64
//
Query:       KKY20072.1  [L=482]
Description: putative udp-glucosyl transferase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-20   74.1   0.0    4.3e-20   72.0   0.0    1.7  2  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
      1e-09   38.6   0.0    1.7e-09   37.9   0.0    1.2  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom


Domain annotation for each model (and alignments):
>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0   4.8e-24   4.3e-20     228     416 ..     186     386 ..     178     406 .. 0.89
   2 ?   -0.6   0.1     0.048   4.3e+02     441     466 ..     425     450 ..     422     474 .. 0.77

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 4.8e-24
       UDPGT 228 vwllrsyfdlefPrpllpnvefigglnckpakplpkeleefvqssGehGvvvfSlGsmvseipeekanaiAsaLakipqk.....vlWrfdgkkPstLa 321
                 + l+ ++f +e P+ l p ++ +g + + +  pl+ ele f+ +   + v ++++Gs +  +   +  ++ ++++   q      v+W ++  k s   
  KKY20072.1 186 LILVNTFFGFEPPKELPPLLVPVGPILSDNYSPLTPELESFLST--HKNVLYIAFGSHINLTGGSRFTKLFDGINSAIQSgfidgVVWTLKPPKTSSSS 282
                 5688999***********************************88..9**************99999999999998776644444499*99886666666 PP

       UDPGT 322 knt.........llvkWlPqndlLgHPktkAFvtHaGangvyEaisnGvPmvglPlFgdqrdNikrmeakgaavtlnvkemtsedllnAlkevindksy 411
                 +n           + +++Pq ++L HP+t  F++H Ga ++ Ea+ +GvP+ glP++ dq + +  +e++g +++++ + + ++++ + +  +  ++s+
  KKY20072.1 283 SNPlpnfdpkfyHITPFAPQRAILAHPSTTLFLSHCGASSINEALFHGVPILGLPIYNDQFKYALCIENVGVGLKMDKTDFEAKEVHQKIGRMTTEPSF 381
                 6668888898889*************************************************************************9999999999999 PP

       UDPGT 412 kenim 416
                 +++  
  KKY20072.1 382 QQDSK 386
                 87644 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.048
       UDPGT 441 mrhkGAkhlRaaahdLtWyqyhsLDv 466
                 +rh+  +hl +a+  ++W++    D+
  KKY20072.1 425 VRHRRPPHLQTASARMSWFRAGNYDI 450
                 59*****************9888886 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   1.9e-13   1.7e-09      55     155 ..     292     389 ..     273     406 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 1.9e-13
                      CEEEEEESSSSHHHHHHHH-.EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHCCS--- CS
  Glyco_tran_28_C  55 lkvevfefidkmaeaikaad.LvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallelaaeklr 147
                      + +++++f+++ a + + +  L +s+ Ga++i+E+l++g+p +  p       +q + a  +e+ g++l +++++++ +++++++ ++ +e++ 
       KKY20072.1 292 KFYHITPFAPQRAILAHPSTtLFLSHCGASSINEALFHGVPILGLPIYN----DQFKYALCIENVGVGLKMDKTDFEAKEVHQKIGRMTTEPSF 381
                      4599******77777776668*************************998....***************************************98 PP

                      S---SSCH CS
  Glyco_tran_28_C 148 laekskas 155
                      ++  +++ 
       KKY20072.1 382 QQDSKRMM 389
                      77766664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 3031.68
//
Query:       KKY20073.1  [L=297]
Description: putative rta1-domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-63  214.1   9.7    1.6e-63  214.1   9.7    1.6  1  RTA1          RTA1 like protein
  ------ inclusion threshold ------
       0.13   12.0   2.0        0.2   11.4   0.1    2.1  2  YniB          YniB-like protein


Domain annotation for each model (and alignments):
>> RTA1  RTA1 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.1   9.7   1.7e-67   1.6e-63       2     205 ..      65     271 ..      64     273 .. 0.96

  Alignments for each domain:
  == domain 1  score: 214.1 bits;  conditional E-value: 1.7e-67
        RTA1   2 ilGcileviGYigRilsakn.tskaslgpfiiqivllllaPafiaaaiYmllgrlilllgeelsllrpklytkiFvvlDvvslllqaaGGglaasasss 99 
                 +lG++ e+iG++gR++s+k  ++    ++f++q+++l++aP+f+aaa+Y++lg+l++  g+e+s+l+pkly +iFv++Dvv+ll+qaaG+g+a+++ ++
  KKY20073.1  65 FLGALGELIGWAGRTWSSKCpYN---SHAFLMQVTTLVIAPVFFAAALYVILGQLVIRRGDEYSILKPKLYLWIFVTSDVVALLVQAAGAGVASNQFNK 160
                 79******************555...**********************************************************************887 PP

        RTA1 100 ae..aklGeniiiaGlalQvvvlvvFlllaldFllrvr...kskkfkkfllalyaavlliliRsiyRvvElaeGwdgylithEvyfyvLdallillavv 193
                      ++G++i+++Gla+Q++++++F+++++ F+++     + ++ + ++ a ++++l+i+iR+iyR+v+la+Gw+gyl +hE++f++Lda+++++av 
  KKY20073.1 161 VGgdPTKGTHIVVGGLAFQIFSMTAFIICFAYFIVKSWhfpSPRSENLVISATIISCLTIYIRCIYRTVQLAQGWTGYLSSHEAFFLALDAAMMVVAVG 259
                 7778************************************855778899999*********************************************** PP

        RTA1 194 llnvfhpgrlfk 205
                 ++++f p+ l++
  KKY20073.1 260 IYMLFDPAVLLR 271
                 *******99887 PP

>> YniB  YniB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   2.2e-05       0.2     135     162 ..      87     114 ..      77     118 .. 0.87
   2 ?   -0.9   0.2      0.14   1.2e+03      58      82 ..     198     222 ..     171     236 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.2e-05
        YniB 135 prhtillqifpLyilPviiavigyvllk 162
                  +h++l+q+ +L+i+Pv+ a++ yv+l 
  KKY20073.1  87 NSHAFLMQVTTLVIAPVFFAAALYVILG 114
                 579*********************9985 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.14
        YniB  58 WknsPvPdfkellassni.aFlliyl 82 
                 W + P P+ ++l+ s++i + l iy+
  KKY20073.1 198 W-HFPSPRSENLVISATIiSCLTIYI 222
                 4.457777777776655415566776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2382.79
//
Query:       KKY20074.1  [L=455]
Description: putative udp-glucuronosyltransferase 2a3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-14   52.5   0.0    5.8e-14   51.8   0.0    1.3  1  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
    7.7e-06   26.0   0.0    1.5e-05   25.1   0.0    1.5  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
    0.00032   19.7   0.0    0.00055   18.9   0.0    1.3  1  Epimerase_2      UDP-N-acetylglucosamine 2-epimerase
  ------ inclusion threshold ------
      0.055   13.6   0.2       0.16   12.1   0.0    1.8  2  DUF1205          Protein of unknown function (DUF1205)


Domain annotation for each model (and alignments):
>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   1.3e-17   5.8e-14     234     419 ..     230     423 ..     175     427 .. 0.80

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 1.3e-17
       UDPGT 234 yfdlefPrpllp.nvefiggl....nckpakplpkeleefvqssGehGvvvfSlGsmvseipeekanaiAsaLakipqkvlWrfdg.......kkPstL 320
                    +e+Pr   p n+ +ig l    + k ++plp      ++   ++ +vv+S G++  +   + +    +aL+++  +v+  +          +  ++
  KKY20074.1 230 IESFEYPRSDAPsNLRYIGALapgdENKSQHPLPDWWDLVIKH--DKPLVVVSQGTLSNHNYKDLIIPTLEALKDLDIRVVTTLVRtdsldgdLQDFQI 326
                 34699**9877669****9883333468889999888888888..9**********988888777788889****999987665443345555566678 PP

       UDPGT 321 akntllvkWlPqndlLgHPktkAFvtHaGangvyEaisnGvPmvglPlFgdqrdNikrmeakgaavtlnvkemtsedllnAlkevindksykenimrLs 419
                  +n l+ k++P  +l +H      v  +G  +v  a  +GvPmv      d+++  +r +  gaa++l +++ t+e++  A+++v+nd+ yk+ +m+L 
  KKY20074.1 327 PSNVLVAKFIPFEELFKHAD--LVVNNGGYGTVQTAFGHGVPMVLAGQTEDKTETNARAAWSGAAINLACQTATAEQVRDAVEKVLNDPKYKNRAMELK 423
                 8999**************76..589*****************************999***************************************996 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   3.3e-09   1.5e-05      54     154 ..     325     422 ..     272     441 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 3.3e-09
                      T..CEEEEEESSSSHHHHHHHH-EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHCCS- CS
  Glyco_tran_28_C  54 t..lkvevfefidkmaeaikaadLvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallelaaek 145
                      +   +v v +fi+  +e+ k adLv+  +G gt+  +  +g+p++l    e   +  + Na++ +  gaa++l  +++t e++ +a++++++++
       KKY20074.1 325 QipSNVLVAKFIP-FEELFKHADLVVNNGGYGTVQTAFGHGVPMVLAGQTE---DKTETNARA-AWSGAAINLACQTATAEQVRDAVEKVLNDP 413
                      333688999****.******************************9987777...778888876.678*************************99 PP

                      --S---SSC CS
  Glyco_tran_28_C 146 lrlaekska 154
                      +  ++ ++ 
       KKY20074.1 414 KYKNRAMEL 422
                      974444333 PP

>> Epimerase_2  UDP-N-acetylglucosamine 2-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.2e-07   0.00055     202     346 ..     292     439 ..     269     440 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.2e-07
                  HHHHHHHHHHHHH--EEEEE--..HHHHHHHHHHHHH-TTEEEE----HHHHHHHHHC-SEEEES-H.HHHHHHHHCT--EEESSSS-S-THHHHTTS CS
  Epimerase_2 202 eilealkalakekdvevvvpvhnnprtrkrlleeleelenvtlieplgyldflsllknaklvltdSg.GiqeEapslgvpvvnlReeteRpegveagt 298
                   i+ +l+al++  d++vv ++ +++     l++ ++  +nv + + +    f +l k+a+lv+ + g G  + a+  gvp+v   ++ +  e+ ++++
   KKY20074.1 292 LIIPTLEALKDL-DIRVVTTLVRTDSLDGDLQD-FQIPSNVLVAKFI---PFEELFKHADLVVNNGGyGTVQTAFGHGVPMVLAGQTEDKTETNARAA 384
                  577789999998.89999999999999999875.5444688887655...566799************8877**********9987777777766543 PP

                  ......EEE-T.T-HHHHHHHHHHHCT-..--......--TT-SS-HHHHHHHHH CS
  Epimerase_2 299 ......nvlvg.tdkeeIvaaleklledkkelekmanaknpYgdGkaseriveil 346
                        n  ++ +++e++ +a+ek+l+d k  ++  + k+ Y   +a + i++ +
   KKY20074.1 385 wsgaaiNLACQtATAEQVRDAVEKVLNDPKYKNRAMELKKEYEACDALQSIADNI 439
                  22222155576256899*********99555555566799***********9976 PP

>> DUF1205  Protein of unknown function (DUF1205)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.5   1.1e+04      56      70 ..     101     115 ..      96     123 .. 0.71
   2 ?   12.1   0.0   3.5e-05      0.16      27      82 ..     259     314 ..     254     330 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.5
                 ----STTTTHHHHHT CS
     DUF1205  56 adadlleavldqvae 70 
                 a++++++avl++va+
  KKY20074.1 101 AQHESVQAVLEDVAA 115
                 567778888888775 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.5e-05
                 S----GGGSS-..-SS-EEEEE-------------STTTTHHHHHTSSSEEEE---TT CS
     DUF1205  27 asvveeWlkkk..sarkRvcvtlGtskaedladadlleavldqvaelDaEivvaldee 82 
                 +  +++W+      +++ v+v+ Gt ++++++  dl+  +l+++ +lD  +v +l   
  KKY20074.1 259 QHPLPDWWDLVikHDKPLVVVSQGTLSNHNYK--DLIIPTLEALKDLDIRVVTTLVRT 314
                 55689**98643389999*******9999777..9*****************997654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2976.70
//
Query:       KKY20075.1  [L=2177]
Description: putative polyketide synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-73  247.0   0.0    3.7e-73  246.2   0.0    1.4  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
      3e-60  203.9   0.3    2.7e-59  200.8   0.0    2.3  2  SAT              Starter unit:ACP transacylase in aflatoxin b
    1.3e-38  133.3   0.0    2.5e-38  132.4   0.0    1.4  1  Acyl_transf_1    Acyl transferase domain
    1.1e-33  115.7   0.8    2.8e-33  114.4   0.8    1.7  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    3.7e-21   76.3   0.0    1.1e-20   74.8   0.0    1.8  1  Thioesterase     Thioesterase domain
      9e-21   74.0   2.5    1.3e-11   44.6   0.1    2.8  2  PP-binding       Phosphopantetheine attachment site
      2e-15   56.8   0.0    5.3e-15   55.4   0.0    1.6  2  PS-DH            Polyketide synthase dehydratase
    4.3e-05   23.9   0.0    0.00011   22.6   0.0    1.7  1  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
     0.0045   16.4   0.2      0.017   14.5   0.2    1.9  1  Thiolase_N       Thiolase, N-terminal domain


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.2   0.0   1.9e-76   3.7e-73       2     253 .]     365     614 ..     364     614 .. 0.95

  Alignments for each domain:
  == domain 1  score: 246.2 bits;  conditional E-value: 1.9e-76
                    --EEEEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggndveefwelLlegrdaiselpadrwdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllleaa 96 
                    ++vaivGm++rfPg++++e+fw ++ + +d  +e+p++r+d +k+ydp+ + ++ i tk+g+fld   dfd ++f+isprea++mdp+qrlll ++
     KKY20075.1 365 NDVAIVGMSGRFPGSESLEDFWTVIQKAQDLHKEIPESRFDISKHYDPTGQKKNAILTKYGCFLDnPGDFDCRLFNISPREAAQMDPMQRLLLMTT 460
                    68********************************************************************************************** PP

                    HHHHHHHTS-HHTC...TTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHH CS
  ketoacyl-synt  97 wealedagltpeel...dgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqsl 189
                    +eale +g+t + +   d++r++ f G +a d+++++  +  g   +++   v+ +++++++gr+++ +++ Gps+++d+ C+Ss  av +a+++l
     KKY20075.1 461 YEALEMSGYTRNGTlstDSRRIATFFGQAADDQREINHVE--G--IDVYY--VPGLARAFAPGRLNHCFKWGGPSYSLDSVCASSCSAVLLACSAL 550
                    *********998776656666**********997644444..2..45666..7777**************************************** PP

                    HTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 190 rsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                     s+++d+a+aGG + l  p a+ag+s+ g+lsp+g ck+f+++adG+++GEGvG+v+Lkrleda
     KKY20075.1 551 NSRDCDTAVAGGGSILNAPHAYAGLSKGGFLSPSGGCKTFRDDADGYCRGEGVGVVILKRLEDA 614
                    **************************************************************98 PP

>> SAT  Starter unit:ACP transacylase in aflatoxin biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.8   0.0   1.3e-62   2.7e-59       1     240 []       7     244 ..       7     244 .. 0.99
   2 ?    0.5   0.1      0.21   4.2e+02     104     132 ..     975    1003 ..     964    1070 .. 0.82

  Alignments for each domain:
  == domain 1  score: 200.8 bits;  conditional E-value: 1.3e-62
         SAT   1 llFGDqtadvlpeLrkLl.qakenplLrsFLekasealraeisrlpaaerkslprftslqellerysesglkspalssallciaqlaqfivyleenpee 98 
                 l+FGDqt+ + + +r+L+ qak +pl+r+FL++a++++++e+  l+a+erk++ +f ++ el+e+  +++++   + ++l+c+ ++++ + y+e+np+ 
  KKY20075.1   7 LVFGDQTVATIAAIRNLHrQAKVSPLIRRFLNDAADVVQKETIVLNAEERKKFFDFGTIIELAEECAKQEEAEDLIATVLVCVSRVGEMLLYAEKNPSL 105
                 79************************************************************************************************* PP

         SAT  99 yps.pestylvGlCtGllaAaavacskslseLvplaveavrvafrlGlevarvaarleegsssssesWslavtglseeelekalaefneekglppasrv 196
                 + s +++  ++G+CtGll+Aaa a++++++eL +l++e++ +++rl++e++r+++r+e    ++++ W+ +vt l+ ee ++++++fn+++ +p+++ +
  KKY20075.1 106 LGStDNKIFMIGFCTGLLPAAATAAARDTTELFSLGLEMLAMTVRLAAETTRRSKRVE----ETPGCWGFLVTALPAEEQQEIINKFNRDERIPSHRSA 200
                 ***888****************************************************....77889******************************** PP

         SAT 197 yisavssssvtisGpPstleallksskakkkkkksklpiyapyH 240
                 yis++s+s++ti+GpP++l +l++ s+    ++k +lpi a+ H
  KKY20075.1 201 YISVISQSWTTICGPPTVLTRLFAYSPELGLAPKLRLPIGAAVH 244
                 *****************************************999 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.21
         SAT  104 stylvGlCtGllaAaavacskslseLvpl 132 
                  ++ ++G++ G  +A +va   sls+ + l
  KKY20075.1  975 PSLVIGHSLGEYSALCVAGVLSLSDTLYL 1003
                  57899999999999999998888875444 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.4   0.0   1.3e-41   2.5e-38       1     280 [.     891    1182 ..     891    1211 .. 0.83

  Alignments for each domain:
  == domain 1  score: 132.4 bits;  conditional E-value: 1.3e-41
                     EEEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT-.-HHHHHHS--TTGGGSHHHH..HHHHHHHHHHHHHHHHHTT-TTSEEEE-T CS
  Acyl_transf_1    1 vfvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygf.svldvlrnnpeglldaiqfv..qpaLaavqialaellkskGvrpaavvGHS 91  
                     vf f+GqG+Q aGMG +L++t +af+++i  +    +   g+    d+++++    l+++q v  q+a++a++iala+l+ks G +p +v+GHS
     KKY20075.1  891 VFAFTGQGAQYAGMGKDLYETCPAFRNSILSSQSECQW-LGLpAFVDLITDAS-VDLTRTQSVqnQLAIVALEIALADLWKSWGIQPSLVIGHS 982 
                     799********************************999.88846789999999.788999877225888999********************** PP

                     THHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHT..S-EECCEECS..HHHHHHH.....TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC. CS
  Acyl_transf_1   92 lGElAaavvagalsseeallavvlrsrlmmqla..gpgdmaavel.aeeeeklr...cqddvvgavansprrvvisgsqealrelvervskegv 179 
                     lGE++a+ vag ls+ + l  v  r  l ++    g+ +m+av   a++ +++           ++ n+p+++v+sg+ + ++ l  + +  g+
     KKY20075.1  983 LGEYSALCVAGVLSLSDTLYLVGHRALLLQKKCeaGAYAMLAVRSpAKSVQEILdgeHLGTCEISCFNGPHSTVVSGKFDDIQTLKSKFEGSGL 1076
                     *******************9999998887766524666788888873333333312234566789***************************** PP

                     CCEEECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHH.HHHCHHHHHHHHHHHCHCCHCCHHTTS....SSECC-CCEECSSS CS
  Acyl_transf_1  180 galvenvnvavhspqvdaiadalasaladiaprkpkvakisstsldes.serelsaeywvanlrspvrfaeavlsa....aetiplvfveispH 268 
                        v +  + +hs+q+d+i ++     + +   kp v+  s+++ +   +++++sa y  +  r pv f  a+ +     + + +   +e+ p 
     KKY20075.1 1077 KTTVLRNPYGFHSQQMDSILKDYETIAQGVHFGKPAVPVASTLKGSIIkDAGVFSALYLSEQARGPVDFLGALEACqsgkLVDDQTFWLELGPD 1170
                     *********************99888777999***********9998779*******************8877665333444444455777777 PP

                     SCCHCCCCCCCH CS
  Acyl_transf_1  269 slllaalektlk 280 
                     ++ l  ++ tl+
     KKY20075.1 1171 PVCLGMVNSTLR 1182
                     777777777776 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   0.8   1.4e-36   2.8e-33       2     116 ..     623     738 ..     622     739 .. 0.98

  Alignments for each domain:
  == domain 1  score: 114.4 bits;  conditional E-value: 1.4e-36
                      EEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   2 avikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHleaAa 94 
                      avi+g+a n++  ++s+t+p++  q+ +++++l++a ++p++v+yve+hgt+t++gD +E++++++vf+++++   pl+vg+vK+n+GH+eaAa
       KKY20075.1 623 AVIRGAARNYSSDAASITHPHAGNQESLYRQVLQQACIEPNEVGYVEMHGTATQAGDVVEMSSVTNVFANGRSdATPLYVGAVKANVGHGEAAA 716
                      8*********99***********************************************************99989****************** PP

                      HHHHHHHHHHHHHHTEE--BTT CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptln 116
                      G+++lik++l+++++ ipp+++
       KKY20075.1 717 GITALIKSLLMFRENSIPPQVG 738
                      *******************986 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0   5.3e-24   1.1e-20       2     217 ..    1901    2147 ..    1900    2160 .. 0.77

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 5.3e-24
                    EEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTSTSHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT-SEEE CS
  Thioesterase    2 pLflfppagGsasvfrslasklsdpvvevlavqlpgrerdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesqGlavks 96  
                    pLfl  ++ Gsa+++ +l s  s+    ++a++ p  + +++   +i+e+a+++++a+r++qp gPy ++G+S+G+  A+e +r L + G+++ +
    KKY20075.1 1901 PLFLITDGAGSATAYIHLPSFPSG--LPIYALESPFLHCPQEYTVNIHEMAEMFVAAIRKTQPTGPYMIGGWSAGAVYAYESSRLLLDAGEKILG 1993
                    8******************98888..7***********9999***************************************************** PP

                    EEEESCCCCCCHHCHHCCCHTTHHT..HHHHHCCTTHHHCCTTTHCCHHHHHHHHHHHHHHHHHTCCS-TTSCSE.................... CS
  Thioesterase   97 lflidssapseteaqeasrraedee..fveeltdlggtepeelledeellsellpalradyraleqyslrpeaaq.................... 169 
                    l+l d   p  +     +  + +e+  +++ +++ g ++++ + + +   ++ll++++  +   +++   p++++                    
    KKY20075.1 1994 LILLDMRVPRPMPDALEPTMELLEQagLITGIKRAGRSLAPMSQKLK---EHLLSTVKQLMIYNPKA-MEPSRRPahtviiwakkgmsevigdgg 2084
                    *******9988766666666666644555555555555444444444...77888888888666666.666666668889999877777777765 PP

                    ...........HHCEEEEEEGSS-CTCCCCCCCHCH...........................CHCTCESCEEEEEESSHCCHHHS CS
  Thioesterase  170 ...........klratlfngsddklkdldtlelaer...........................weqktsgevsvhvlegdhfylle 217 
                               +                       +                           w++ + +    hv+++dhf +++
    KKY20075.1 2085 almggnanaeaE-----------------------KgknvmedestgltswfyakrhafgpngWDKLVGENLECHVVDADHFSMVT 2147
                    555554443222.......................122222222234555555555899************************998 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.4     7e-10   1.4e-06       2      65 ..    1624    1686 ..    1623    1688 .. 0.94
   2 !   44.6   0.1   6.7e-15   1.3e-11       3      63 ..    1733    1793 ..    1731    1797 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 7e-10
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaa 65  
                   +++++ae  g++ +++++++ + dl +D ll+++++ ++++  g++ip s++    t++++ +
  KKY20075.1 1624 SILAIIAEEAGLDIDSLADNSKFEDLQIDQLLVISITTKIRDSTGLDIPTSVF-SDATVGDVRR 1686
                  689************************************************99.9999998765 PP

  == domain 2  score: 44.6 bits;  conditional E-value: 6.7e-15
  PP-binding    3 lrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfe.hptlael 63  
                   +++vae +g + e++  dt + dlG+DSl++v+++ a++++ g+++p + +   hpt++++
  KKY20075.1 1733 FLSIVAEETGYAIEDMQEDTLFEDLGVDSLMSVAITDAIKKQTGIDVPAAFF-SvHPTVGSV 1793
                  689*************85666669**************************88.66****986 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   2.7e-18   5.3e-15      24     294 ..    1302    1583 ..    1284    1586 .. 0.79
   2 ?   -3.9   0.0       3.2   6.4e+03      63     130 ..    1643    1699 ..    1630    1726 .. 0.59

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 2.7e-18
                  S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.......-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E....EEEEEEE-SS-TT CS
       PS-DH   24 laelpwLrDHrvdgkvvlPgagylemaleAarqltges......kavelrdvsilkalvlpedepvevqlslepeedgadrawvefeifSregggee 114 
                  ++ l  ++ H v+g ++ P  ++  ma+ Aa+ ++ +        +++l+ + i ++lv+p  +p++++ +   +  ++   +++++i   +++g+ 
  KKY20075.1 1302 PELLDVMQGHIVNGMAICPSSVFADMAFTAAKYVHMKNrpgkpiPPLSLNSLDIAHPLVVPGPNPRQIVYVKAVASKKS---KWTVNIIFTSTDGS- 1394
                  556677899**************************6666667788****************999888766655553444...46777655555554. PP

                  .EEEEEEEEEE-----............--B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEETTEEEEEE---.GGGSST CS
       PS-DH  115 wtehatGtvrlaegaa............aaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrgdgealaelrlp.eelagg 198 
                     h +G+++++ g++              ++ +++l ++++   +++++    +Y+ + +  ++y +++qgl+++  + +   a ++++ ++++ +
  KKY20075.1 1395 -SSHQHGSCHVEFGNKdewseewsktsyLVKARIDSLIESAKSG-KVQRLLRPFVYKLF-ENVVHYSEKYQGLHEVFLDNDLGDAVASVKlQSIR-Q 1487
                  .7899999999999888899999877775556666663333333.34444455999999.999***************86655555555533444.3 PP

                  TTT-SB-HHHHHHHHHHG..GG.----------EEEEEEEEEEE-S...-BTS--EEEEEE.----SS-EEEEEEEE-SS-BEEEEEESEEEEE--X CS
       PS-DH  199 esayvlhPallDaalQllaaal.saeaekadaaylPvaierlrvyrpssaageelwvharl.eeegarsivadltlvdedGrvvaeieglrlrrver 293 
                   +++   P+  D +++l + +l + +++ ++ ayl  +++++r+ + + + +++  +++r+ +++++  +++d+ ++d    +va  +g+ +++ ++
  KKY20075.1 1488 CGQFTYAPYWSDPIVHLAGFVLnGNANTPDGFAYLSAGLKSMRILG-DLSEDKTYFSYVRMqQSRQKGILTGDVYVFD-GESIVALCSGVMFQMMPK 1582
                  4469999*********777778877899999**************6.78899*********877778899*******7.788999999998888776 PP

                  X CS
       PS-DH  294 e 294 
                  +
  KKY20075.1 1583 K 1583
                  5 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.2
                  -EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E....EEEEEEE-SS-TT.EEEEEEEEEE----- CS
       PS-DH   63 avelrdvsilkalvlpedepvevqlslepeedgadrawvefeifSregggeewtehatGtvrlaegaa 130 
                    +++d++i + lv++      +++ ++ ++  +       ++fS ++ g+  ++ ++ + +l  ++ 
  KKY20075.1 1643 NSKFEDLQIDQLLVIS------ITTKIRDSTGLDI----PTSVFSDATVGD-VRRYCETEFQLSSADN 1699
                  5567777777777776......5555555544444....677777777776.5777777777666555 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   5.4e-08   0.00011       2     105 ..     744     853 ..     744     862 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 5.4e-08
  KAsynt_C_assoc   2 npeipaleegrlkVvteptpwpggi.......vgvNsfGfGGsnvHviLksnkkekrkeeskeeslprLlvlsgrteeaveallekleeh.llda 88 
                     n++ p l++++++++++++p++  +          N f   G n  ++L+ ++ + +k++++  +++++++ls+rt+ ++++  e+l ++  ++ 
      KKY20075.1 744 NSKFPLLKRLNVRIPDKNVPFKPYAtsdgkrkLFLNNFDAAGGNISLLLEDPPIKPQKKADP--RNHHVITLSARTPYSLNKGKERLLQWlDKNI 836
                     667788999************9998888999999*******************999988888..9*************************65667 PP

  KAsynt_C_assoc  89 ellsllneilseeisrl 105
                     +++++++ ++++  +r+
      KKY20075.1 837 SKVNIADIAYTTTARRM 853
                     88888888888777773 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   8.4e-06     0.017      77     112 ..     528     563 ..     520     579 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.4e-06
                 EEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEE CS
  Thiolase_N  77 pavtvnkvcsSglkavalaaqsiaageadvvvagGv 112
                 p+  ++ vc+S+ +av la+ ++ + ++d +vagG+
  KKY20075.1 528 PSYSLDSVCASSCSAVLLACSALNSRDCDTAVAGGG 563
                 5678999****************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.47
# Mc/sec: 13933.31
//
Query:       KKY20076.1  [L=1225]
Description: putative abc multidrug transporter mdr1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-99  331.1  30.6    8.7e-56  189.6   5.3    2.2  2  ABC_membrane  ABC transporter transmembrane region
      2e-65  219.4   0.2    1.5e-32  113.0   0.0    2.8  2  ABC_tran      ABC transporter
    1.7e-18   66.9   0.0    4.2e-07   29.6   0.0    3.2  3  SMC_N         RecF/RecN/SMC N terminal domain
    5.9e-08   32.8   0.0     0.0012   18.8   0.0    2.8  2  RsgA_GTPase   RsgA GTPase
    8.4e-07   29.5   3.1      0.028   14.8   0.3    3.3  2  AAA_16        AAA ATPase domain
      2e-06   27.4   0.3      0.016   15.0   0.1    2.9  2  AAA_29        P-loop containing region of AAA domain
    2.9e-06   27.3   0.2       0.02   14.6   0.1    2.6  2  AAA_15        AAA ATPase domain
    7.8e-06   25.9   1.3        1.6    8.5   0.1    4.2  4  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    2.7e-05   24.5   3.1       0.31   11.3   0.1    4.2  3  AAA_22        AAA domain
    0.00014   21.1   0.0       0.12   11.5   0.0    2.5  2  DUF815        Protein of unknown function (DUF815)
    0.00038   20.1   0.3       0.73    9.4   0.1    3.0  3  AAA_25        AAA domain
    0.00041   19.6   0.0       0.74    8.9   0.0    2.3  2  G-alpha       G-protein alpha subunit
    0.00056   20.2   0.5       0.58   10.4   0.1    3.2  3  AAA_28        AAA domain
    0.00074   19.1   0.0       0.98    8.9   0.0    2.4  2  AAA_7         P-loop containing dynein motor region
     0.0011   18.3   0.7       0.39   10.0   0.0    3.1  4  Zeta_toxin    Zeta toxin
     0.0014   18.7   0.2        3.7    7.5   0.0    3.5  3  AAA_5         AAA domain (dynein-related subfamily)
      0.004   17.4   1.2          3    8.1   0.1    3.3  2  SbcCD_C       Putative exonuclease SbcCD, C subunit
     0.0041   17.2   2.3       0.55   10.3   0.0    3.0  2  DUF87         Helicase HerA, central domain
     0.0045   16.7   0.3        4.9    6.8   0.0    3.3  3  AAA_30        AAA domain
     0.0054   17.1   1.3         19    5.7   0.0    4.0  3  AAA           ATPase family associated with various cellular 
     0.0067   15.3   1.7        1.3    7.7   0.1    2.6  3  ABC_ATPase    Predicted ATPase of the ABC class
     0.0074   16.5   0.3        3.3    7.9   0.2    3.0  2  AAA_33        AAA domain
  ------ inclusion threshold ------
      0.012   15.6   1.4        4.8    7.3   0.0    3.3  3  MMR_HSR1      50S ribosome-binding GTPase
      0.022   15.3   1.0        3.2    8.2   0.0    3.1  3  AAA_23        AAA domain
      0.025   15.1   0.1         15    6.1   0.0    2.7  2  AAA_18        AAA domain
      0.045   13.5   0.0        3.6    7.3   0.0    2.4  2  PRK           Phosphoribulokinase / Uridine kinase family
      0.096   12.6   0.5         13    5.6   0.1    2.9  3  APS_kinase    Adenylylsulphate kinase
       0.12   12.1   0.3         17    5.0   0.0    2.7  2  AAA_24        AAA domain
       0.14   12.5   0.0         16    6.0   0.0    2.6  2  RNA_helicase  RNA helicase
       0.17   11.7   0.1         47    4.0   0.0    3.3  3  pXO2-34       Family of unknown function


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.6  17.3   9.4e-46   5.6e-43       8     269 ..       2     279 ..       1     283 [. 0.97
   2 !  189.6   5.3   1.4e-58   8.7e-56       1     273 [.     656     929 ..     656     930 .. 0.97

  Alignments for each domain:
  == domain 1  score: 147.6 bits;  conditional E-value: 9.4e-46
                   HHHHHHHHHHHHHHHHHHHHHHHSSTCCHH.................HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS CS
  ABC_membrane   8 ailagvlsplfplvlgrildtlldkgdpet.................ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrq 87 
                   a+++g++ p++ +v+g++   + +++ +++                 ++l+++ +++++l++++f++ ++ +  ++ +g r+++r+r +++++ilrq
    KKY20076.1   2 AAAGGAVVPVMTIVFGSLAGEFQGFSIDSSslaghiqdllytihhfrQELSRLTTYFVYLAIGEFATIYICTLGFIFIGDRITRRIRERYLEAILRQ 98 
                   678999******************988888999**************************************************************** PP

                   THHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  88 pmsffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvae 184
                   +++ffd+  +Ge+++r+t d++ ++d++++k+   ++ l+tfv+++i++f   wkl ++ l+ ++ ++lv+  ++k++ +++k+  ++ a ++++ae
    KKY20076.1  99 NIGFFDKLGSGEVTTRITVDTNLIQDAISQKVANTITLLSTFVTAFIIIFERFWKLGFISLSAVVAMALVMGGMSKFVVSYSKRSLESFALSNTIAE 195
                   ************************************************************************************************* PP

                   HHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHH CS
  ABC_membrane 185 EslsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfai 269
                   Es++ +rt  afg++ +  +++++ l ++++ gi++ ++ g++i+ + ++++l y l +w+G+ +  ++e++v++ +v++++++i
    KKY20076.1 196 ESIEYVRTTVAFGAQGKLAKQYNNHLSTVHRTGITAKTLLGVSIAGMSCIVMLNYGLNFWMGSRFLVNDEVTVNK-IVTITYATI 279
                   ***************************************************************************.666677664 PP

  == domain 2  score: 189.6 bits;  conditional E-value: 1.4e-58
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH......HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHH CS
  ABC_membrane   1 liliillailagvlsplfplvlgrildtlldkgdpet......ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsf 91 
                   +i+++ ++ilag   p  ++++++ +++l++            +++n+++l++l lg++ f +++ + + + +++erl++r+r k+f++ilrq++ f
    KKY20076.1 656 MIFGLQMSILAGSGTPTSAVFFAKCIQSLSKPP---RlydqlrHDINFWCLMYLWLGILLFTVNFWRDRAFAICSERLMHRVRDKAFRSILRQDLDF 749
                   6889999**********************9752...224478889**************************************************** PP

                   HHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  92 fdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEsls 188
                   f++ns+G l+s l++++  l+ + g +lg ++++ +t+++++++++ ++w+l lv+ +++p+++ + +++ ++l++++ k q+a++++ s+a E+ s
    KKY20076.1 750 FEHNSTGALISFLSTETTHLSGISGPTLGALLTFSTTLIAAIVLSIAFSWRLGLVCASTVPVLLGCGYLRFHMLSQFEAKAQEAYERSASYACEATS 846
                   ************************************************************************************************* PP

                   THHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHH CS
  ABC_membrane 189 girtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfga 273
                   +irtV +++re++ le+++ +l++   + +++ +++++l +++q++++l++al +w+G+tlv++++l++ +  +f+++  i fga
    KKY20076.1 847 AIRTVASLTREKTILEEYHRQLDDQALKRRTSVLYSSALYAASQSFPFLCIALGFWYGGTLVSQQQLNIFE--FFVCFTEITFGA 929
                   ***********************************************************************..999999998886 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7   0.0   1.9e-32   1.1e-29       1     137 []     352     510 ..     352     510 .. 0.95
   2 !  113.0   0.0   2.5e-35   1.5e-32       1     137 []     996    1146 ..     996    1146 .. 0.90

  Alignments for each domain:
  == domain 1  score: 103.7 bits;  conditional E-value: 1.9e-32
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................... 79 
                 l++ +l++ +g+++a+vG +G+GKS++++ll + ++p  G+ill g+++ + +l++lr++++ + qep lf+++ ++ n                    
  KKY20076.1 352 LDKFTLHVPAGKTTALVGASGSGKSSIVNLLERFYQPVTGDILLGGHSIAKLNLRFLRQQMALVGQEPVLFDTT-IEANilygligskfenesdvikre 449
                 68899*******************************************************************99.9999************99999999 PP

                 .....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                      ++++++++++s l + +  +t v+ +++ LSgGqkqr+a+ara++++p++lllDE+t+
  KKY20076.1 450 rlitaAKSANAHAFVSLLPDGY--QTEVGGGGHLLSGGQKQRIAIARAIISDPSILLLDEATS 510
                 9988888888999999999888..99999999*****************************96 PP

  == domain 2  score: 113.0 bits;  conditional E-value: 2.5e-35
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................x RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................e 80  
                  l++++l++++g+ va+vG +G+GKSt ++ll + ++pt G il+dg+d+++ + + +r++i+ ++qep+l  ++ ++en                  
  KKY20076.1  996 LRDLNLTIEPGKYVALVGASGCGKSTTVALLERFYDPTLGAILVDGQDISKLNVNTYRSHISLVSQEPTLYHGT-IKENillgasedtsedrliqaC 1091
                  6899*******************************************************************999.********99885555555444 PP

                  HHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   81 sdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                  +d+++ +++++l ++    t v+ ++  LSgGqkqr+a+aral+++p++lllDE+t+
  KKY20076.1 1092 RDANVLDFITSLPDSF--STLVGPKGVLLSGGQKQRLAIARALIRNPRILLLDEATS 1146
                  4444777777777777..89998999*****************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0029       1.8      25      42 ..     363     380 ..     353     385 .. 0.85
   2 !   25.3   0.1   1.5e-08   8.9e-06     136     211 ..     481     552 ..     420     559 .. 0.86
   3 !   29.6   0.0     7e-10   4.2e-07      85     209 ..     578    1186 ..     553    1194 .. 0.96

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0029
                 SEEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlld 42 
                 + ta+vG+ GSGKs++++
  KKY20076.1 363 KTTALVGASGSGKSSIVN 380
                 589************986 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 1.5e-08
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgv 211
                 lLSgG+k+ +a+a       ++  ++ llDe  +aLD k  ++v e l+++ k    ivi++r  ++++ad++v +
  KKY20076.1 481 LLSGGQKQRIAIARA----IISDPSILLLDEATSALDTKSETIVQEALNNAAKGRTTIVIAHRLSTIKDADNIVVM 552
                 79*****98887643....45677899********************************************99865 PP

  == domain 3  score: 29.6 bits;  conditional E-value: 7e-10
                  ETTEESSSSSSCEEEEEEEETTSE.EEEEETTEEE-HHHHHHHHHCTT-STT............................................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
       SMC_N   85 nedkklkiekeevsisrrvkrkge.seykingkevtkkevsellesagiske............................................. 135 
                  n +k l++++ee  i+  ++ k+e s+++++ +  t + +++++ sa+is++                                             
  KKY20076.1  578 NAQKFLEEKTEEGDIEDDIVLKKEmSSHALEHEVETTATIESVFTSANISRQgtvvkqnplgklislifsfnrkdiswmifglqmsilagsgtptsa 674 
                  566667788888999988887777699********************************************************************** PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY20076.1  675 vffakciqslskpprlydqlrhdinfwclmylwlgillftvnfwrdrafaicserlmhrvrdkafrsilrqdldffehnstgalisflstetthlsg 771 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY20076.1  772 isgptlgalltfsttliaaivlsiafswrlglvcastvpvllgcgylrfhmlsqfeakaqeayersasyaceatsairtvasltrektileeyhrql 868 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY20076.1  869 ddqalkrrtsvlyssalyaasqsfpflcialgfwyggtlvsqqqlnifeffvcfteitfgaqtagivfasapdiakgrsaanglkvlfdrqpridtw 965 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY20076.1  966 atggqpleklegridfqnvtfryptrtqpvlrdlnltiepgkyvalvgasgcgksttvallerfydptlgailvdgqdisklnvntyrshislvsqe 1062
                  ************************************************************************************************* PP

                  ......................................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHH CS
                  ......................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 ......................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkk 178 
                                                                        lLSgG+k+ +a+a       ++   + llDe  +aLD +  + 
  KKY20076.1 1063 ptlyhgtikenillgasedtsedrliqacrdanvldfitslpdsfstlvgpkgvLLSGGQKQRLAIAR----ALIRNPRILLLDEATSALDPTSESH 1155
                  *************************************************************9777654....345666789**************** PP

                  HHHHHHHHCTTSEEEEE-SSHHHCCC-SCEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  179 vaellkeksknaQfivislreemlekadklv 209 
                  v   l+++sk    i i++r  ++++ad ++
  KKY20076.1 1156 VQAALDAASKGRTTIAIAHRLSTIQRADWIY 1186
                  **************************99876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     2e-06    0.0012      75     124 ..     337     387 ..     327     396 .. 0.74
   2 !   10.6   0.0   0.00064      0.38      86     120 ..     992    1027 ..     971    1043 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2e-06
                  TTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  75 lgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpele 124
                   ++++++ s ++ + l++ + ++   kt++lvG SG GKS+++n l    +
   KKY20076.1 337 QQVDLVYPSRQDVTVLDKFTLHVPAgKTTALVGASGSGKSSIVNLLERFYQ 387
                  55666667777777777777777655*******************986555 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00064
                   THTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase   86 tkegleelkellkd.ktsvlvGqSGvGKStLinall 120 
                   t+  l++l+  ++  k ++lvG SG GKSt +  l 
   KKY20076.1  992 TQPVLRDLNLTIEPgKYVALVGASGCGKSTTVALLE 1027
                   5566778888888779**************988775 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   0.00012     0.075      25      52 ..     363     398 ..     350     536 .. 0.55
   2 !   14.8   0.3   4.7e-05     0.028      25     163 ..    1007    1164 ..     993    1190 .. 0.51

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00012
      AAA_16  25 elvllsGesGvGKsslvrellralekd........g 52 
                   + l+G+sG+GKss+v+ l r ++          +
  KKY20076.1 363 KTTALVGASGSGKSSIVNLLERFYQPVtgdillggH 398
                 67899************8777533322333665441 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 4.7e-05
      AAA_16   25 elvllsGesGvGKsslvrellralekd.ggiflrgkcdql......esaipy....sa.laqalareellrqlldeaesaeleawrekleeala... 106 
                   +v l+G+sG+GKs+ v  l r +  + g+i++ g+  +       +s i++     + +  +++++ ll + +d +e+++ +a r++         
  KKY20076.1 1007 KYVALVGASGCGKSTTVALLERFYDPTlGAILVDGQDISKlnvntyRSHISLvsqePTlYHGTIKENILLGASEDTSEDRLIQACRDANVL--Dfit 1101
                  799**************99998777775444444444333211111111111222211133333333333333333333333333332222..1334 PP

      AAA_16  107 ............avpelagaeasrllellkrllallsrderplvlvlDdlq.wadeaslqllaaLlrlle 163 
                               +  l+g +++rl+ + ++l+      + p +l+lD++   +d++s +  +a l++++
  KKY20076.1 1102 slpdsfstlvgpKGVLLSGGQKQRLAIA-RALI------RNPRILLLDEATsALDPTSESHVQAALDAAS 1164
                  3333333333322222222222222222.2222......3367777777774455555555666666655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   2.6e-05     0.016      16      39 ..     356     379 ..     350     383 .. 0.80
   2 !    9.3   0.0    0.0015      0.93      17      39 ..    1001    1023 ..     996    1028 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.6e-05
      AAA_29  16 tieidlkg.atlltGpsGsGKSTll 39 
                 t+++  +g +t l+G+sGsGKS+++
  KKY20076.1 356 TLHVP-AGkTTALVGASGSGKSSIV 379
                 55665.5569*************98 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0015
      AAA_29   17 ieidlkgatlltGpsGsGKSTll 39  
                  ++i++   + l+G+sG GKST +
  KKY20076.1 1001 LTIEPGKYVALVGASGCGKSTTV 1023
                  5667666899***********76 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   3.4e-05      0.02      20      48 ..     360     387 ..     352     651 .. 0.84
   2 !    9.9   0.0   0.00092      0.55      22      68 ..    1006    1047 ..     996    1100 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.4e-05
      AAA_15  20 dlseeltvliGkNnsGKSsilealdlFln 48 
                 +  + +t l+G+ +sGKSsi+++l+ F +
  KKY20076.1 360 PAGK-TTALVGASGSGKSSIVNLLERFYQ 387
                 5556.9*********************88 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00092
      AAA_15   22 seeltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleif 68  
                   + +  l+G+ ++GKS+ + +l+ F + +      +i ++ +d+++ 
  KKY20076.1 1006 GK-YVALVGASGCGKSTTVALLERFYDPT----LGAILVDGQDISKL 1047
                  34.899*******************9987....55666666666655 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1    0.0027       1.6       2      23 ..     365     386 ..     364     412 .. 0.84
   2 ?    3.8   0.0      0.07        42     236     294 ..     481     536 ..     427     538 .. 0.83
   3 ?    4.8   0.0     0.036        21       3      57 ..    1010    1071 ..    1008    1088 .. 0.70
   4 ?    4.2   0.0     0.054        33     236     273 ..    1117    1151 ..    1113    1162 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0027
      AAA_21   2 nvliGpNgsGKSnLLdaldlla 23 
                 ++l+G+ gsGKS++  +l+ + 
  KKY20076.1 365 TALVGASGSGKSSIVNLLERFY 386
                 89************99998764 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.07
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvil 294
                  lS G+k+ +a++ a+++++   s+ll+DE  + L+ k  + + e l++++++++ +++
  KKY20076.1 481 LLSGGQKQRIAIARAIISDP---SILLLDEATSALDTKSETIVQEALNNAAKGRTTIVI 536
                 5799***9999999999999...*************96655555999999997777776 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.036
      AAA_21    3 vliGpNgsGKSnLLdaldllarl.......drdvegltdelsggggirkipslldlydpeip 57  
                  +l+G+ g+GKS+   +l+ + +        d+  ++  ++++ +++i+ ++ +++ly+ +i+
  KKY20076.1 1010 ALVGASGCGKSTTVALLERFYDPtlgailvDGQDISKLNVNTYRSHISLVSQEPTLYHGTIK 1071
                  79***********9999998777777776666666666666666666666666666665555 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.054
      AAA_21  236 elSdGtkrllalltallralkkgsllliDEpEngLHPk 273 
                   lS G+k+ la++ al+r +   ++ll+DE  + L+P 
  KKY20076.1 1117 LLSGGQKQRLAIARALIRNP---RILLLDEATSALDPT 1151
                  5799*****99999999988...*************94 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0016      0.95       8     107 ..     365     522 ..     361     540 .. 0.71
   2 ?   -0.5   0.1       2.2   1.3e+03      44      86 ..     848     889 ..     821     895 .. 0.68
   3 !   11.3   0.1   0.00051      0.31       7      32 ..    1008    1033 ..    1003    1170 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0016
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee..............................................erpevv....fvtlpsstsskdl 56 
                 ++++G sG+GK+  ++ l + ++ +                                                   ++++v+    ++t+++s +   +
  KKY20076.1 365 TALVGASGSGKSSIVNLLERFYQPVTGDILlgghsiaklnlrflrqqmalvgqepvlfdttieanilygligskfeNESDVIkrerLITAAKSANAHAF 463
                 789*****************9976543333888888888888888888888888888888888888888888888777777777777888888888888 PP

      AAA_22  57 lrellralglelkaerlsseell.ealeqalrarav...ielliiDEaqh.lr..s....ee 107
                  + l   ++ e  +     + l   + ++ + ara    +++l++DEa   l+  s    +e
  KKY20076.1 464 VSLLPDGYQTEVGG---GGHLLSgGQKQRIAIARAIisdPSILLLDEATSaLDtkSetivQE 522
                 88888888877777...444444556666666666577777888888877776653333344 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.2
      AAA_22  44 fvtlpsstsskdllrellralglelkaerlsseell.ealeqal 86 
                   t++s+t  k++l+e  r+l++++ +   +++ l+ +al+ a+
  KKY20076.1 848 IRTVASLTREKTILEEYHRQLDDQALK--RRTSVLYsSALYAAS 889
                 557888889999999999999999999..777777767777665 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00051
      AAA_22    7 ilvvtGesGtGKTtllrrlleqldee 32  
                   ++++G sG+GK+t+++ l + +d  
  KKY20076.1 1008 YVALVGASGCGKSTTVALLERFYDPT 1033
                  5789***************9999643 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0     0.005         3      54      78 ..     363     387 ..     334     422 .. 0.76
   2 !   11.5   0.0   0.00021      0.12      52      96 ..    1005    1048 ..     999    1058 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.005
      DUF815  54 nnvLLwGarGtGKSslvkallneya 78 
                 +   L+Ga G+GKSs+v  l + y+
  KKY20076.1 363 KTTALVGASGSGKSSIVNLLERFYQ 387
                 45679************98776665 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00021
      DUF815   52 pannvLLwGarGtGKSslvkallneyaeegLrlievekedlkelp 96  
                  p + v L+Ga G+GKS++v all+++ + +L  i v+ +d+++l+
  KKY20076.1 1005 PGKYVALVGASGCGKSTTV-ALLERFYDPTLGAILVDGQDISKLN 1048
                  667799***********99.899*****************99986 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1    0.0012      0.73      29      50 ..     358     379 ..     351     399 .. 0.90
   2 !    7.0   0.0    0.0067         4      30      50 ..    1003    1023 ..     978    1028 .. 0.79
   3 ?   -1.6   0.0       2.9   1.7e+03      84     167 ..    1081    1158 ..    1070    1175 .. 0.49

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0012
      AAA_25  29 llpagelallaGapgtGKttla 50 
                 ++pag++++l+Ga+g+GK+ ++
  KKY20076.1 358 HVPAGKTTALVGASGSGKSSIV 379
                 78*****************876 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0067
      AAA_25   30 lpagelallaGapgtGKttla 50  
                  +  g+ ++l+Ga+g+GK+t +
  KKY20076.1 1003 IEPGKYVALVGASGCGKSTTV 1023
                  677999************975 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.9
      AAA_25   84 delrrRlravgealrddarl.lvldlagveslpLfakdrggtl...ltadvdaleaaieevegvrlvviDplsralggdensnsdvga 167 
                  d+ + Rl ++++++     l ++++l+++   +L+ ++  g l    + +  a+++a+ +  ++r + +D  ++al+  ++  s v+a
  KKY20076.1 1081 DTSEDRLIQACRDA---NVLdFITSLPDS-FSTLVGPK--GVLlsgGQKQRLAIARALIR--NPRILLLDEATSALDPTSE--SHVQA 1158
                  44467777777666...222122333332.11222222..22211112222234444444..4788888887777755444..33333 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0022       1.3      27      49 ..     366     388 ..     358     404 .. 0.92
   2 !    8.9   0.0    0.0012      0.74      26      50 ..    1009    1033 ..     997    1087 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0022
                 EEEESTTSSHHHHHHHHHHHCS- CS
     G-alpha  27 lllGqseSGKsTilkqlkllykk 49 
                  l+G+s+SGKs+i++ l+++y++
  KKY20076.1 366 ALVGASGSGKSSIVNLLERFYQP 388
                 599******************87 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0012
                  EEEEESTTSSHHHHHHHHHHHCS-- CS
     G-alpha   26 llllGqseSGKsTilkqlkllykkg 50  
                  + l+G+s++GKsT++  l+++y+++
  KKY20076.1 1009 VALVGASGCGKSTTVALLERFYDPT 1033
                  679*******************998 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0      0.02        12       3      21 ..     366     384 ..     364     394 .. 0.85
   2 ?   -1.5   0.0       4.4   2.6e+03      65      94 ..     409     438 ..     395     475 .. 0.63
   3 !   10.4   0.1   0.00097      0.58       2      21 ..    1009    1028 ..    1008    1038 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.02
      AAA_28   3 vitGgestGKTtlleaLaa 21 
                 +++G++++GK+++++ L++
  KKY20076.1 366 ALVGASGSGKSSIVNLLER 384
                 799************9986 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 4.4
      AAA_28  65 eeeaaaaankvlfcDrglldtlaYaraygg 94 
                 +++ a  +++ +++D+ + +++ Y     +
  KKY20076.1 409 RQQMALVGQEPVLFDTTIEANILYGLIGSK 438
                 3334446788999*********99865544 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00097
      AAA_28    2 ivitGgestGKTtlleaLaa 21  
                  ++++G++++GK+t+++ L++
  KKY20076.1 1009 VALVGASGCGKSTTVALLER 1028
                  799************99985 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0016      0.98      20      52 ..     349     381 ..     330     389 .. 0.78
   2 !    7.5   0.0    0.0045       2.7      26      51 ..     999    1024 ..     990    1034 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0016
       AAA_7  20 vrysyllelllknkkpvllvGptGtGKtviikd 52 
                 v +   ++l++ ++k + lvG +G+GK++i++ 
  KKY20076.1 349 VTVLDKFTLHVPAGKTTALVGASGSGKSSIVNL 381
                 555555788999******************985 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0045
       AAA_7   26 lelllknkkpvllvGptGtGKtviik 51  
                  l+l ++ +k v lvG +G+GK++++ 
  KKY20076.1  999 LNLTIEPGKYVALVGASGCGKSTTVA 1024
                  56788999***************987 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0      0.02        12      19      39 ..     365     385 ..     353     395 .. 0.83
   2 ?   -3.4   0.1       7.9   4.7e+03      78     110 ..     514     546 ..     507     550 .. 0.73
   3 ?   -3.0   0.0       6.1   3.7e+03      84     104 ..     865     885 ..     850     889 .. 0.82
   4 !   10.0   0.0   0.00065      0.39      17      56 ..    1007    1046 ..     996    1062 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.02
  Zeta_toxin  19 illgGqpGAGKselaellkde 39 
                   l+G++G+GKs++ +ll++ 
  KKY20076.1 365 TALVGASGSGKSSIVNLLERF 385
                 5689************99875 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.9
  Zeta_toxin  78 kdaselvekllqeaiengyniivegtlrspdvv 110
                   + ++v+++l+ a++ +  i++   l+++ ++
  KKY20076.1 514 TKSETIVQEALNNAAKGRTTIVIAHRLSTIKDA 546
                 567788999999999999999987766666555 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 6.1
  Zeta_toxin  84 vekllqeaiengyniivegtl 104
                  ++l ++a++++ ++++ ++l
  KKY20076.1 865 HRQLDDQALKRRTSVLYSSAL 885
                 57888999*******999998 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.00065
  Zeta_toxin   17 klillgGqpGAGKselaellkdelerqgnvvrldpDdlRe 56  
                  k + l+G++G+GKs++ +ll++  +++ +++ +d+ d+ +
  KKY20076.1 1007 KYVALVGASGCGKSTTVALLERFYDPTLGAILVDGQDISK 1046
                  56889*************************9999988755 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.012       6.9       4      23 ..     367     386 ..     365     397 .. 0.88
   2 !    7.5   0.0    0.0062       3.7       2      23 ..    1009    1030 ..    1008    1041 .. 0.86
   3 ?   -2.3   0.0       6.6   3.9e+03      63      77 ..    1133    1147 ..    1110    1160 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.012
                 EE--SSSSHHHHHHHGGGGB CS
       AAA_5   4 LvGppGtgKselaerlaaal 23 
                 LvG++G+gKs+++  l +++
  KKY20076.1 367 LVGASGSGKSSIVNLLERFY 386
                 9*************999887 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0062
                  EEEE--SSSSHHHHHHHGGGGB CS
       AAA_5    2 vlLvGppGtgKselaerlaaal 23  
                  v LvG++G+gKs+ +  l +++
  KKY20076.1 1009 VALVGASGCGKSTTVALLERFY 1030
                  679************9999876 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 6.6
                  --G-SEEEEESGGG- CS
       AAA_5   63 aregeilvlDEvera 77  
                  +r+++il+lDE + a
  KKY20076.1 1133 IRNPRILLLDEATSA 1147
                  458899999998866 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2     0.021        13      63      84 ..     499     520 ..     468     526 .. 0.79
   2 !    8.1   0.1     0.005         3      62      85 ..    1134    1157 ..    1117    1162 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.021
     SbcCD_C  63 alrlvfLDEAFsklDeesiatl 84 
                 ++++++LDEA s lD +s + +
  KKY20076.1 499 DPSILLLDEATSALDTKSETIV 520
                 5899***********9986655 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.005
     SbcCD_C   62 palrlvfLDEAFsklDeesiatll 85  
                  +++r+++LDEA s lD++s + + 
  KKY20076.1 1134 RNPRILLLDEATSALDPTSESHVQ 1157
                  469*************99877665 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.026        16      26      43 ..     365     382 ..     357     395 .. 0.86
   2 !   10.3   0.0   0.00091      0.55      26      59 ..    1009    1040 ..     994    1059 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.026
       DUF87  26 lAilgsTGsGKSntvavL 43 
                 +A +g +GsGKS  v +L
  KKY20076.1 365 TALVGASGSGKSSIVNLL 382
                 799************976 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00091
       DUF87   26 lAilgsTGsGKSntvavLleellekkgatililD 59  
                  +A +g +G GKS+tva+ le+ + ++ +  +++D
  KKY20076.1 1009 VALVGASGCGKSTTVAL-LERFY-DPTLGAILVD 1040
                  799************96.57777.7777666666 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.018        11      19      44 ..     363     388 ..     356     415 .. 0.85
   2 ?   -1.6   0.0       3.2   1.9e+03      82     115 ..     493     526 ..     440     535 .. 0.64
   3 !    6.8   0.0    0.0082       4.9      16      43 ..    1004    1031 ..     999    1044 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.018
      AAA_30  19 rvavltGpAGtGKttalkalreawea 44 
                 ++++l+G+ G+GK+ +++ l++ ++ 
  KKY20076.1 363 KTTALVGASGSGKSSIVNLLERFYQP 388
                 47899*************99998875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.2
      AAA_30  82 grarlepgtllivDEagmvdtkqlaallkaaeka 115
                 +ra +++ ++l+ DEa  +  ++ ++++++a ++
  KKY20076.1 493 ARAIISDPSILLLDEATSALDTKSETIVQEALNN 526
                 4444555688999999888666666666666554 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0082
      AAA_30   16 sgdrvavltGpAGtGKttalkalreawe 43  
                  ++ ++++l+G+ G GK+t+++ l++ ++
  KKY20076.1 1004 EPGKYVALVGASGCGKSTTVALLERFYD 1031
                  5667999**************9998876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.6   9.8e+02       3      18 ..     367     382 ..     365     426 .. 0.89
   2 ?    5.7   0.0     0.031        19      44     107 ..     486     535 ..     441     552 .. 0.77
   3 ?    5.6   0.1     0.033        20       2      72 ..    1010    1149 ..    1009    1184 .. 0.55

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.6
                 EESSTTSSHHHHHHHH CS
         AAA   3 lyGppGtGKTllakav 18 
                 l+G  G GK+++++ +
  KKY20076.1 367 LVGASGSGKSSIVNLL 382
                 89**********9876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.031
                 HHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEE CS
         AAA  44 kkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivig 107
                 +k r  +++a  +  psil++DE+ +   ++      +e+ v+++L ++ +g ++       i+
  KKY20076.1 486 QKQRIAIARAIISD-PSILLLDEATSALDTK------SETIVQEALNNAAKGRTT-------IV 535
                 55555666655555.9***********9999......677777777777777665.......33 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.033
                  EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCSSS................................................... CS
         AAA    2 llyGppGtGKTllakavakel..........gvefleisgsellsk................................................... 37  
                   l+G  G+GK++++  + +            g+++ ++++ + +s+                                                   
  KKY20076.1 1010 ALVGASGCGKSTTVALLERFYdptlgailvdGQDISKLNVNTYRSHislvsqeptlyhgtikenillgasedtsedrliqacrdanvldfitslpds 1106
                  6899999999999987766642222222333233444444444433555555556655666666655555555555555555555555555555555 PP

                  .........STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHH CS
         AAA   38 .........yvgesekkirelfkeakekakpsilfiDEidalak 72  
                           ++  + +k r  +++a   + p il++DE+ +   
  KKY20076.1 1107 fstlvgpkgVLLSGGQKQRLAIARALIRN-PRILLLDEATSALD 1149
                  55555555555555555555555555554.66777777666554 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       5.5   3.3e+03     242     275 ..     359     392 ..     357     392 .. 0.79
   2 !    7.7   0.1    0.0022       1.3     299     355 ..     457     514 ..     450     585 .. 0.78
   3 !    6.1   0.0    0.0066         4     298     352 ..    1092    1147 ..    1078    1160 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 5.5
                 E-SS.EEEEEE-TTSSHHHHHHHHHHCCSEE-TTS CS
  ABC_ATPase 242 ipkG.vtlIvGggfhGKsTLLeAlekGvynhvpgD 275
                 +p G  t++vG    GKs +++ le+  y+ v gD
  KKY20076.1 359 VPAGkTTALVGASGSGKSSIVNLLER-FYQPVTGD 392
                 677778999*********99998887.56666665 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0022
                 EE--TTTB---CCC--ST.TEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHH CS
  ABC_ATPase 299 gvDispFinnLPegkdtt.kfstedASGStsqAanimealeagakllLiDEDtsAtNl 355
                 +++  +F++ LP g +t+     +  SG   q  +i++a+  + ++lL+DE tsA   
  KKY20076.1 457 SANAHAFVSLLPDGYQTEvGGGGHLLSGGQKQRIAIARAIISDPSILLLDEATSALDT 514
                 6778899*********9966677789*****************************764 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0066
                  EEE--TTTB---CCC--ST.TEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS- CS
  ABC_ATPase  298 kgvDispFinnLPegkdtt.kfstedASGStsqAanimealeagakllLiDEDtsA 352 
                  + +++  Fi++LP   +t         SG   q  +i++al ++ ++lL+DE tsA
  KKY20076.1 1092 RDANVLDFITSLPDSFSTLvGPKGVLLSGGQKQRLAIARALIRNPRILLLDEATSA 1147
                  4567889******99999855555678****************************9 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.035        21       4      32 ..     367     393 ..     365     460 .. 0.75
   2 !    7.9   0.2    0.0056       3.3       2      35 ..    1009    1046 ..    1009    1196 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.035
      AAA_33   4 lvGlpGsGKstlaerllkklgavllssdt 32 
                 lvG++GsGKs  +  l   + ++ ++ d+
  KKY20076.1 367 LVGASGSGKSSIVNLLE--RFYQPVTGDI 393
                 79********9887554..4455555554 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0056
      AAA_33    2 vllvGlpGsGKstlaerllkklg....avllssdtlrr 35  
                  v lvG++G+GKst +  l +  +    a+l++  ++++
  KKY20076.1 1009 VALVGASGCGKSTTVALLERFYDptlgAILVDGQDISK 1046
                  568**********9987754333334577777666554 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.008       4.8       2      19 ..     365     382 ..     364     395 .. 0.88
   2 ?    0.5   0.1         1   6.3e+02      27      75 ..     527     578 ..     514     611 .. 0.70
   3 ?    4.5   0.0     0.061        37       2      17 ..    1009    1024 ..    1008    1058 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.008
                 EEEEESTTSSHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinal 19 
                  a+vG + +GKS+++n l
  KKY20076.1 365 TALVGASGSGKSSIVNLL 382
                 589*************87 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1
                 SSSTTSSSSEEEEEEEETT.EEEEEEECGGCSS.HHHHHH.HHHHHHHHHHC CS
    MMR_HSR1  27 sdkpgtTrdinegrvklkg.keielvDtpGlie.gaseek.glgkaflalee 75 
                 ++k  tT+ i ++  ++k+ ++i+++D   +ie g+++e  + + a+++l +
  KKY20076.1 527 AAKGRTTIVIAHRLSTIKDaDNIVVMDSGKIIEqGKHDELlQSKGAYEKLVN 578
                 4555667777666666777799*****9998875555555555555555444 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.061
                  EEEEESTTSSHHHHHH CS
    MMR_HSR1    2 vaivGrpNvGKStLin 17  
                  va+vG +  GKSt + 
  KKY20076.1 1009 VALVGASGCGKSTTVA 1024
                  89***********875 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0054       3.2      20      39 ..     363     382 ..     347     384 .. 0.84
   2 ?   -2.3   0.3       9.1   5.5e+03     153     175 ..     564     586 ..     496     622 .. 0.50
   3 ?    3.9   0.0      0.11        65      14      36 ..    1002    1023 ..     994    1027 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0054
      AAA_23  20 gltlItGpNGaGKTTildAi 39 
                 + t+++G  G+GK++i++ +
  KKY20076.1 363 KTTALVGASGSGKSSIVNLL 382
                 6899************9865 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 9.1
      AAA_23 153 erleelekeleeledekkllekl 175
                 ++l + + ++e+l + +k+le++
  KKY20076.1 564 DELLQSKGAYEKLVNAQKFLEEK 586
                 23333333333333333333333 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.11
      AAA_23   14 eidFskgltlItGpNGaGKTTil 36  
                  +i+ +k  ++++G  G+GK+T +
  KKY20076.1 1002 TIEPGK-YVALVGASGCGKSTTV 1023
                  455553.4489**********76 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.028        17       3      20 ..     367     384 ..     366     418 .. 0.82
   2 ?    6.1   0.0     0.025        15       1      20 [.    1009    1028 ..    1009    1061 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.028
      AAA_18   3 ltGtpGvGKttlakeLsk 20 
                 l G++G+GK+++ + L++
  KKY20076.1 367 LVGASGSGKSSIVNLLER 384
                 89*************955 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.025
      AAA_18    1 IlltGtpGvGKttlakeLsk 20  
                  ++l G++G+GK+t    L++
  KKY20076.1 1009 VALVGASGCGKSTTVALLER 1028
                  6899*********9999854 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.081        48       3      23 ..     366     386 ..     365     409 .. 0.84
   2 ?    7.3   0.0    0.0061       3.6       2      39 ..    1009    1045 ..    1008    1061 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.081
         PRK   3 gvagsSGaGkttvarklekif 23 
                 ++ g+SG+Gk+++ + le   
  KKY20076.1 366 ALVGASGSGKSSIVNLLERFY 386
                 578**********99888655 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0061
         PRK    2 IgvagsSGaGkttvarklekifgrekvkaaeiegdsfl 39  
                  +++ g+SG+Gk+t+ + le      ++ a  ++g+ + 
  KKY20076.1 1009 VALVGASGCGKSTTVALLERFYD-PTLGAILVDGQDIS 1045
                  6889*********9998876554.66666666555554 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.022        13       3      25 ..     363     385 ..     361     406 .. 0.80
   2 ?    4.0   0.0     0.071        43       4      41 ..    1008    1044 ..    1005    1052 .. 0.79
   3 ?   -2.6   0.0       7.3   4.4e+03      13      53 ..    1165    1206 ..    1162    1216 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.022
                 EEEEEESSTTSSHHHHHHHHHHH CS
  APS_kinase   3 vvvwltGlsgsGKstianalekk 25 
                  +  l G sgsGKs+i n le+ 
  KKY20076.1 363 KTTALVGASGSGKSSIVNLLERF 385
                 567799*************9975 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.071
                  EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH CS
  APS_kinase    4 vvwltGlsgsGKstianalekkLvekgisvylLdGdnv 41  
                   v l G sg GKst    le +  +    ++l+dG+ +
  KKY20076.1 1008 YVALVGASGCGKSTTVALLE-RFYDPTLGAILVDGQDI 1044
                  67899*********877777.56777888888999887 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 7.3
                  SSHHHHHHHHHHHHHHTT--EEEE.EHHHHTTTTTTT--SSH CS
  APS_kinase   13 sGKstianalekkLvekgisvylL.dGdnvRhgLnkdLgfse 53  
                   G++tia a   +  ++   +y+L dG +v +g   dL  ++
  KKY20076.1 1165 KGRTTIAIAHRLSTIQRADWIYVLeDGKVVEEGRHVDLVRKR 1206
                  699999999888777788778887689999888877776655 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.057        34       3      25 ..     363     384 ..     361     393 .. 0.84
   2 ?    5.0   0.0     0.029        17       5      25 ..    1009    1028 ..    1006    1042 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.057
      AAA_24   3 lkiliyGpsgiGKTtlakelgpk 25 
                 +  +++G sg+GK+++++ l ++
  KKY20076.1 363 KTTALVGASGSGKSSIVNLL-ER 384
                 67899**********99887.54 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.029
      AAA_24    5 iliyGpsgiGKTtlakelgpk 25  
                  ++++G sg GK+t+++ l ++
  KKY20076.1 1009 VALVGASGCGKSTTVALL-ER 1028
                  899***********9988.54 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.14        81       3      18 ..     367     382 ..     365     395 .. 0.87
   2 ?    6.0   0.0     0.026        16       2      18 ..    1010    1026 ..    1009    1044 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.14
  RNA_helicase   3 lyGpsgeGKStlakeL 18 
                   l+G+sg GKS++++ L
    KKY20076.1 367 LVGASGSGKSSIVNLL 382
                   79**********9986 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.026
  RNA_helicase    2 wlyGpsgeGKStlakeL 18  
                     l+G+sg+GKSt++  L
    KKY20076.1 1010 ALVGASGCGKSTTVALL 1026
                    689*********98775 PP

>> pXO2-34  Family of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.64   3.8e+02      13      40 ..     537     565 ..     531     580 .. 0.76
   2 ?    4.0   0.0     0.078        47      30      62 ..     905     937 ..     902     954 .. 0.95
   3 ?    2.0   0.0      0.32   1.9e+02      11      35 ..    1171    1196 ..    1164    1208 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.64
     pXO2-34  13 ahtvrlf.dgsiwinlgnGkfinqetrqv 40 
                 ah  +++ d  + ++++ Gk+i+q +  +
  KKY20076.1 537 AHRLSTIkDADNIVVMDSGKIIEQGKHDE 565
                 55666654788999*********987665 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.078
     pXO2-34  30 GkfinqetrqvveveklfekIktavesggvifA 62 
                 G ++ q++ ++ e  + f +I   +++ g++fA
  KKY20076.1 905 GTLVSQQQLNIFEFFVCFTEITFGAQTAGIVFA 937
                 899*****************************9 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.32
     pXO2-34   11 nrahtvrlfdgsiwi.nlgnGkfinq 35  
                    ah  +++ +  wi +l++Gk++++
  KKY20076.1 1171 AIAHRLSTIQRADWIyVLEDGKVVEE 1196
                  56999*********96789***9974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 1.05u 0.40s 00:00:01.45 Elapsed: 00:00:00.56
# Mc/sec: 6601.31
//
Query:       KKY20077.1  [L=2578]
Description: putative polyketide [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-75  252.4   0.0    9.1e-75  251.5   0.0    1.5  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    2.7e-62  209.9   0.3    1.3e-61  207.7   0.1    2.4  2  KR               KR domain
    2.5e-53  181.3   0.0    4.1e-53  180.5   0.0    1.3  1  PS-DH            Polyketide synthase dehydratase
    1.8e-46  159.2   0.0      4e-46  158.0   0.0    1.7  1  Acyl_transf_1    Acyl transferase domain
    1.4e-28   99.3   0.1    1.3e-27   96.1   0.0    2.8  2  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    5.4e-16   58.8   0.0    2.8e-14   53.2   0.0    2.7  2  ADH_zinc_N       Zinc-binding dehydrogenase
    1.5e-14   55.2   0.0    4.4e-13   50.4   0.0    3.2  3  ADH_zinc_N_2     Zinc-binding dehydrogenase
    1.4e-12   47.5   0.2    5.5e-12   45.5   0.0    2.1  2  adh_short        short chain dehydrogenase
    1.3e-11   45.0   0.0    8.5e-11   42.3   0.0    2.5  1  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
      7e-10   39.5   0.0    2.6e-09   37.7   0.0    2.1  1  Methyltransf_12  Methyltransferase domain
    2.1e-07   30.9   0.0    5.3e-07   29.6   0.0    1.6  1  Methyltransf_23  Methyltransferase domain
    2.2e-07   31.4   0.0    1.1e-06   29.2   0.0    2.3  1  Methyltransf_11  Methyltransferase domain
    2.2e-07   31.5   0.0    1.4e-05   25.7   0.0    3.5  2  Methyltransf_25  Methyltransferase domain
    5.2e-07   29.5   0.0    1.3e-06   28.1   0.0    1.6  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.4e-06   27.9   0.0    8.8e-06   25.3   0.0    2.3  2  Thiolase_N       Thiolase, N-terminal domain
    2.2e-05   24.3   0.0    5.4e-05   23.0   0.0    1.7  1  Methyltransf_31  Methyltransferase domain
    2.5e-05   24.1   0.0    5.7e-05   23.0   0.0    1.6  1  ADH_N            Alcohol dehydrogenase GroES-like domain
    4.4e-05   23.8   0.0    0.00014   22.2   0.0    1.9  1  PP-binding       Phosphopantetheine attachment site
     0.0043   16.4   0.0      0.021   14.1   0.0    2.0  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.006   16.3   0.4       0.75    9.5   0.1    2.7  2  ELFV_dehydrog    Glutamate/Leucine/Phenylalanine/Valine dehyd
     0.0097   16.2   0.3        0.1   12.8   0.0    2.9  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
  ------ inclusion threshold ------
      0.011   15.6   0.1      0.032   14.1   0.1    1.8  1  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
       0.08   12.3   0.0       0.15   11.4   0.0    1.4  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
       0.11   12.4   0.0       0.55   10.2   0.0    2.2  1  Phage_Coat_B     Phage Coat protein B


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.5   0.0   1.2e-77   9.1e-75       2     253 .]      19     269 ..      18     269 .. 0.95

  Alignments for each domain:
  == domain 1  score: 251.5 bits;  conditional E-value: 1.2e-77
                    --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..S..TTEGGTTSTHHHHHHHCTS-HHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadrwdadklydpparaagkiktklggfld..vddfdpeffgispreaeamdpqqrllle 94 
                     p+ai+G+++r+Pg  + ++ fw+ Ll+gr+a s++p +rw++d ++dp ++  +++ t+ g fl+  +++fd+ ff+is++ea+a+dpqqr++le
     KKY20077.1  19 TPIAIIGLSCRLPGDAStPQNFWDFLLKGRSAYSKIPPERWNVDSFHDPLKKRLNTSVTEGGHFLKqnIAAFDANFFNISQNEAQAIDPQQRMMLE 114
                    59************9999**************************************9999******9***************************** PP

                    HHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHH CS
  ketoacyl-synt  95 aawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslr 190
                    +a+eale++g+  +++ g+++g+f+G   +dy++  al +d ++   +   +ga  +  +++r+s++++l+Gps+t+ tACsS+lva+h+a+qs+r
     KKY20077.1 115 VAYEALENSGIALDKIAGTQTGCFVGQFTSDYRE--ALFRDVDSAPRYA-GTGA-GPELLSNRLSWFYDLKGPSLTTNTACSSGLVALHLACQSIR 206
                    ********************************87..4554443234444.7787.***************************************** PP

                    TTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 191 sgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    +ge+++a++GG++lll p  + ++s++++lspdg c++fd +a+G+ +GEG ++v+Lk+ +da
     KKY20077.1 207 TGESKMAVVGGSNLLLDPAMFLMLSNQQFLSPDGLCQSFDSRANGYSRGEGFATVILKPIDDA 269
                    **********************************************************98876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       8.5   6.4e+03     138     163 ..    1490    1515 ..    1487    1525 .. 0.84
   2 !  207.7   0.1   1.7e-64   1.3e-61       1     180 []    2189    2369 ..    2189    2369 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 8.5
                  HHHH--TT-HHHHHHHHHHHHHHHHH CS
          KR  138 agllgsagqanYaaaNaflDalaeyr 163 
                  +++ g a   +Ya+ Na +  lae++
  KKY20077.1 1490 SSIHGFALDYTYASPNAAVQKLAEEK 1515
                  6788999999**********999976 PP

  == domain 2  score: 207.7 bits;  conditional E-value: 1.7e-64
                  SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------T CS
          KR    1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkll 97  
                  +ty+++GGlGgLG++la+ l+e+gar l ++sRs+a++ +sk+l++ l+++++ v+v+a+Dv+d++a+++++++  ++ ppi+Gvi+ A+vlrd+l+
  KKY20077.1 2189 ATYVLVGGLGGLGQSLAHLLVEHGARCLCFISRSGATSVESKQLVDDLKNKNVVVRVFACDVADEEALSNTIKQGMSDLPPIRGVIQGAMVLRDSLF 2285
                  79*********************************************************************************************** PP

                  TT--HHHHHHHHTTTTHHHHHHHHHTTT.S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BTT CS
          KR   98 eemtaedleqvlapKvkGawnLhelled.esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwae 180 
                  e+mt +++++ ++pKv G+wnLh+ + + +sldff+l+SS ag++g++gq+nYaaa a++Dala+yr+s+gl+avs+++g++++
  KKY20077.1 2286 ENMTHSQWTESIRPKVMGSWNLHKQFLEkDSLDFFTLLSSFAGVFGNRGQGNYAAAGAYQDALAHYRNSLGLKAVSVDLGIMRD 2369
                  ***********************98876599*************************************************9975 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.5   0.0   5.5e-56   4.1e-53       3     293 ..     970    1281 ..     968    1284 .. 0.88

  Alignments for each domain:
  == domain 1  score: 180.5 bits;  conditional E-value: 5.5e-56
                  TB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---....-EEEEEEEE----.B--SS-EEEEEEEEE-TTS- CS
       PS-DH    3 llGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltges...kavelrdvsilkalvlpedepvevqlslepeedga 96  
                  llG+  +    +e ++r  +r+ e pw rDH+++ ++++P+ag+l+ma+eAarq +      k ++lrdv i +a+vl++de ve  ++l+p+  g+
  KKY20077.1  970 LLGAPYPALGESESLWRGFIRVGEEPWTRDHKIQSSILYPAAGFLAMAIEAARQRADANrvvKEYKLRDVLIDSAVVLKDDEDVECICQLRPHLVGT 1066
                  89999999999*********************************************8889999******************************8877 PP

                  E.......EEEEEEE-SS-TT.EEEEEEEEEE-----...........--B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEE CS
       PS-DH   97 d...rawvefeifSregggeewtehatGtvrlaegaa...........aaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralw 179 
                      ++w+ef+i++++ +++  +++++G ++++ + a           ++++     q +++  ++++++ss  fY +l++ gl+yGp+Fq++++++
  KKY20077.1 1067 RdnsSTWWEFTISTCTPSQD-LRKNCSGLLVIQYEVAadsaaglesrlDDEACRVHYQMTEKLCTNTEEASS--FYSHLSSLGLTYGPTFQNVTQIT 1160
                  7899***************8.8*********99999987666665544222222222334444444455555..*********************** PP

                  EETTEEEEEE---..GGGSSTTTT....-SB-HHHHHHHHHHG..GG----------EEEEEEEEEEE-S....-BTS--EEEEEE----SS-EEEE CS
       PS-DH  180 rgdgealaelrlp..eelaggesa....yvlhPallDaalQllaaalsaeaekadaaylPvaierlrvyr.pssaageelwvharleeegarsivad 269 
                   g g  ++++++p  +++a    +    +++hPa+lDa ++l +aa++++a + d+a++P +i++++v   ++ a g ++   ++ +++g r+++a 
  KKY20077.1 1161 KGVGKSVCSVEIPdtDAVAFPG-QngrpHIIHPATLDAMFHLAFAAVKDQAGQLDEAMVPNSIDEVVVVAdMPFAVGTQFKGFSTAAKHGFRELKAN 1256
                  *************873333222.23567*************888999899*******************9988889999****************** PP

                  EEEE-.SS-BEEEEEESEEEEE--X CS
       PS-DH  270 ltlvd.edGrvvaeieglrlrrver 293 
                  ++++d +  +++++++g+++ +v+ 
  KKY20077.1 1257 IQMLDtAVNKALVKVKGFCCASVSG 1281
                  *****999************99975 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.0   0.0   5.3e-49     4e-46       2     307 ..     581     907 ..     580     919 .. 0.84

  Alignments for each domain:
  == domain 1  score: 158.0 bits;  conditional E-value: 5.3e-49
                    EEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCH..HHT--HHHHHHS--T.TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHH CS
  Acyl_transf_1   2 fvfsGqGsQwaGMGmeLlktskafaaviaradeafks..qygfsvldvlrnnpe.glldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGE 94 
                    fvf+GqG+Qwa MG eL++  k+f +++ +ad+ + +  q  +sv   l   +  + ++a +++qp  +++q+al++ll+s  v p av+GHS GE
     KKY20077.1 581 FVFTGQGAQWAKMGIELFRY-KVFEDSVLAADKYLTNalQCPWSVVAELERPDIeSSINAPEMSQPICTVLQVALVDLLSSWNVSPSAVIGHSSGE 675
                    9*******************.**************87346789999999888843888999*********************************** PP

                    HHHHHHCCSSSHHHHHHHHHHHHHHHHHHT.....S-EECCEECS.....HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CC CS
  Acyl_transf_1  95 lAaavvagalsseeallavvlrsrlmmqla.....gpgdmaavel....aeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvga 181
                    +Aaa+ +g+l+ e+a ++++ r+ l  ql+     ++g+m av+     a+   +   + ++v+a++nsp++v+isg    +++l + ++k+g++ 
     KKY20077.1 676 IAAAYCLGSLTREDAWKVAYHRGILSSQLKtiapeLEGGMMAVGAseseAWDLIAEVSDGELVVACVNSPSSVTISGDMSGIHQLEAILKKKGIFN 771
                    *********************9888777643223479******996554444445558889*********************************** PP

                    EEECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTT..BEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTS..........SSECC-CCEEC CS
  Acyl_transf_1 182 lvenvnvavhspqvdaiadalasaladiaprkpkvak..isstsldesserelsaeywvanlrspvrfaeavlsa..........aetiplvfvei 265
                    ++ +v+ a hsp ++ i    ++a+ d+ p+++   +   ss+s d  ++ el  + wv+nl+spv+f +a+ ++           e + +v ve+
     KKY20077.1 772 RKLKVETAYHSPHMQVISSLYLEAISDVNPMPAYKGRnmFSSVSGDLIDPLELGPANWVRNLVSPVLFSDALHNLlrpthdgkrsSENAVDVLVEL 867
                    ***************************888877655412788999999***********************987643332233244667789**** PP

                    SSSSCCHCCCCCCCHHGGG-TCCCCCCTEETTSS-HHHCHHH CS
  Acyl_transf_1 266 spHslllaalektlksaedvksatlvGklkrdltdflvtfly 307
                     pH+ l+   ++ +k ++++ s +    l r+ ++   t+l 
     KKY20077.1 868 GPHAALQGPSNQVMK-KHGITSIEYKSLLSRGRNA-IDTVLD 907
                    *******99999999.6787777777777666666.555555 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.1   0.0   1.8e-30   1.3e-27       2     117 ..     278     387 ..     277     388 .. 0.97
   2 ?   -1.8   0.0       4.1   3.1e+03      30      58 ..    1860    1887 ..    1847    1889 .. 0.84

  Alignments for each domain:
  == domain 1  score: 96.1 bits;  conditional E-value: 1.8e-30
                      EEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGHH CS
  Ketoacyl-synt_C   2 avikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAaG 95 
                      avi+g+++n+dg+++++t p++eaqa++i++ +a+ag+  e+ +y eahgtgt++gDp Elea++k++g+ +       + +K  iGHle+ aG
       KKY20077.1 278 AVIRGTGINQDGKTKGITLPSAEAQAELIRSTYASAGIGFENTNYFEAHGTGTKAGDPLELEAISKTLGTARP------SNQKLVIGHLESVAG 365
                      9*********************************************************************983......57999********** PP

                      HHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  96 vaelikvvlalkhgvipptlnl 117
                      +a+l+k + +l++g+ipp++++
       KKY20077.1 366 LAGLLKGIFILEKGIIPPSIHY 387
                      *********************8 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 4.1
                       HHHHHHHHT--GGGEEEEE-SS-SSHHHH CS
  Ketoacyl-synt_C   30 iekalaeagvdpedvdyveahgtgtplgD 58  
                        ++ala+++++p +v+ +e  +tg +  D
       KKY20077.1 1860 ETDALAQTEMKPGEVE-IEVKATGLNFRD 1887
                       5789***********8.899999988877 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.19   1.4e+02      54      80 ..     887     923 ..     855     928 .. 0.68
   2 !   53.2   0.0   3.7e-17   2.8e-14       1     106 [.    1989    2097 ..    1989    2120 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.19
                 T..........TTSSEEEEEESSCSHHHHHHHHHCEE CS
  ADH_zinc_N  54 t..........ggegvdvvfecvGsgatleaalkllk 80 
                 t          g + +d v++c+Gs +++ ++++++ 
  KKY20077.1 887 TsieyksllsrGRNAIDTVLDCAGSLKVFGSSVNIAE 923
                 2555555555567899***************999876 PP

  == domain 2  score: 53.2 bits;  conditional E-value: 3.7e-17
                  HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TT..ESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC..TS CS
  ADH_zinc_N    1 gvGlaavqlAkalGaeviavdsseeklelakk.lG..adevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg..gk 92  
                  gvG+aa+qlA ++++e++a+++s +k ++ ++ +G   d++++++++++ + i +lt+ +gvd v++ +  g++l++   +++p G++v +G+    
  KKY20077.1 1989 GVGQAAIQLAQHFNMEIFATVGSIDKKAFIQEhYGisEDHILHSRDTSFAKGIMRLTNMRGVDCVLNSLS-GEALRETWHCIAPFGTFVEIGMkdIL 2084
                  9*******************************999878999999555***********************.**********************9988 PP

                  SEEEEEHHHHHHTT CS
  ADH_zinc_N   93 geeefdlrnlllke 106 
                  g++ +d+r+++ ++
  KKY20077.1 2085 GNTRLDMRPFM-QD 2097
                  88889999964.44 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       9.1   6.8e+03      19      42 ..     898     921 ..     888     948 .. 0.75
   2 ?   -0.0   0.0       2.3   1.7e+03      18      77 ..    1538    1611 ..    1526    1643 .. 0.62
   3 !   50.4   0.0     6e-16   4.4e-13       4     133 .]    2027    2164 ..    2025    2164 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 9.1
                   -TT-EEEEEES-HHHHH.HHHHHH CS
  ADH_zinc_N_2  19 ggegvDvvldtvggealleaslkv 42 
                   g++++D vld++g+ + +  s+++
    KKY20077.1 898 GRNAIDTVLDCAGSLKVFGSSVNI 921
                   467899*****9955554766655 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 2.3
                    H-TT-EEEEEES-H.......HHHH.HHHHHHEEEEEEE..EE----........S-EEE-CHHHCTTT-EEEE-- CS
  ADH_zinc_N_2   18 tggegvDvvldtvg.......gealleaslkvlpggGrl..vsiggpp.......lsaallkpakkrkgrsvkyef 77  
                    ++ +++D+++   +         al   + ++l++gG+l  v++++ p       l +  +++++k ++++  ++f
    KKY20077.1 1538 IKDQSYDIIIAINAfystqdvDSAL-ISLKRHLKPGGKLclVEMTN-PgvqasciLGCLPSWWSRKDSEHADATSF 1611
                    4566788888877777776643333.5556788777**94455544.35898888666666666655554444444 PP

  == domain 3  score: 50.4 bits;  conditional E-value: 6e-16
                    SEEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--..S-EEE-CHHHCTTT-EEEE--GGG...-....-HHH CS
  ADH_zinc_N_2    4 devidyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsig.gpp.lsaallkpakkrkgrsvkyeflfsmkas...aqadi 89  
                    d+++ +r+++f+    + t+ +gvD vl+++ geal +++++++++ G++v+ig +++   ++l ++++    +++++  l  +++       ++
    KKY20077.1 2027 DHILHSRDTSFAkgimRLTNMRGVDCVLNSLSGEAL-RETWHCIAPFGTFVEIGmKDIlGNTRLDMRPF-MQDATFSFLNLEHVQRVkpeLMSEV 2119
                    8999************99*99**************9.*******999*******777753333334434.5456666655554444466678888 PP

                    HHHHHHHHHHHH----EEEE.EEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2   90 leelaalieeGklrpvvdrv.fpleeaaeAhrylesgrarGKiVl 133 
                    +e  ++++ ++  rpv   + +p +++  A+r++++g++rGKi +
    KKY20077.1 2120 IEGTFDFLRQKITRPVAPLTiYPVSDMESAFRLMQAGKHRGKIAI 2164
                    9*****************777*********************975 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       5.8   4.3e+03     101     182 ..    1195    1279 ..    1187    1283 .. 0.67
   2 !   45.5   0.0   7.4e-15   5.5e-12       4     152 ..    2192    2341 ..    2189    2365 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.8
                  HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHH.HHGGGT..EEEEEEEESSB CS
   adh_short  101 wervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslak.elaptg..irvnavaPGlv 182 
                   ++++++ + +v   + ++ +am+ +s  ++v v+ +   v+       +A+K++ + l  ++++ + a  +  ++v + +++ v
  KKY20077.1 1195 LDAMFHLAFAAVKDQAGQLDEAMVPNSIDEVVVVADMPFAVGTQFKGFSTAAKHGFRELKANIQMlDTAVNKalVKVKGFCCASV 1279
                  5666666666666666666666777777777777777777777777777899999999988776523333335588888777665 PP

  == domain 2  score: 45.5 bits;  conditional E-value: 7.4e-15
                  EEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHH...HHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGC CS
   adh_short    4 lvtGassGIGraiakelakeGakvvv.vdrseek...leevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfsel 96  
                  + +G+ +G+G+ +a+ l++ Ga++++ ++rs ++    +++++ lk+++  + ++++Dv+d+e++++++++ +++l ++  ++++A + +++ f+++
  KKY20077.1 2192 VLVGGLGGLGQSLAHLLVEHGARCLCfISRSGATsveSKQLVDDLKNKNVVVRVFACDVADEEALSNTIKQGMSDLPPIRGVIQGAMVLRDSLFENM 2288
                  679**********************99999877511156788888888999********************************************** PP

                  SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHH CS
   adh_short   97 seeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAs 152 
                  + ++w ++i   ++g  +l +++l++    s       sS ag  ++ g+  Y+A+
  KKY20077.1 2289 THSQWTESIRPKVMGSWNLHKQFLEK---DSLDFFTLLSSFAGVFGNRGQGNYAAA 2341
                  **********************9988...556666778999999999999999887 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   1.1e-13   8.5e-11       2      87 ..     391     514 ..     390     549 .. 0.73

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 1.1e-13
  KAsynt_C_assoc   2 npeipaleegrlkVvteptpwpggi...vgvNsfGfGGsnvHviLksnkkekrkeesk....................................e 57 
                     np+i  ++++++ V+ +pt wp +     +vNsfG+GG+n+H++L+ + +   ++ ++                                    +
      KKY20077.1 391 NPSIL-FDDWKISVPVKPTLWPTKGlrrLSVNSFGYGGTNAHAVLDDAYSYLLERGAHglhytiahptlsesggvvaqydangngntnghvnglS 484
                     899**.***************9988899******************9984444444444444444455555566777777777777777777777 PP

  KAsynt_C_assoc  58 eslprLlvlsgrteeaveallekleehlld 87 
                     +   +L +l++ ++++++++ e+++++l++
      KKY20077.1 485 SADTKLYILAASDQDGLKRQREAIAKYLRE 514
                     777888888888888888777777777544 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   3.5e-12   2.6e-09       1      99 []    1475    1575 ..    1475    1575 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 3.5e-12
  Methyltransf_12    1 LeiGcGtGsllralleklpdieytgvDispsai..edakeklakrennnnnnvelealdlldldgg....ssfDlvvasnvlhhlkdirevl 86  
                       Le+G+  G  ++all ++++  + ++  sp+a   + a+ekl + +    + +++++ d+++ d +    +s+D+++a+n++  ++d++++l
       KKY20077.1 1475 LELGGACGGAVSALLSSIHGFALDYTYASPNAAvqKLAEEKLDEFK----TSLNFKVYDIAKPDASgikdQSYDIIIAINAFYSTQDVDSAL 1562
                       8****************98777777777777774455555555555....456666666666655566779********************* PP

  Methyltransf_12   87 dnirklLkpgGrl 99  
                        +++++LkpgG+l
       KKY20077.1 1563 ISLKRHLKPGGKL 1575
                       ***********97 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   7.1e-10   5.3e-07      20     125 ..    1468    1588 ..    1446    1626 .. 0.70

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 7.1e-10
  Methyltransf_23   20 lraggrvLdiGcGtG.illevl.rengf..svtgvDlspeaveiae....kakkaqkdqfdeqeaaepqg......kfdlIvlrevlehvpd 97  
                         a++++L++G + G  ++ +l + +gf  ++t   ++ + +++ae    +  +  + +f   ++a+p++      ++d+I++++ +++ +d
       KKY20077.1 1468 THADSKILELGGACGgAVSALLsSIHGFalDYTYASPNAAVQKLAEekldE--FKTSLNFKVYDIAKPDAsgikdqSYDIIIAINAFYSTQD 1557
                       5678899****9999677777766678877999999998777777777552..33333333345666555557777**************** PP

  Methyltransf_23   98 ppellrqiatllkpgGylllseplasl...k 125 
                       + ++l +++++lkpgG l l e +++    +
       KKY20077.1 1558 VDSALISLKRHLKPGGKLCLVEMTNPGvqaS 1588
                       ********************99777653331 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.5e-09   1.1e-06       4      95 ..    1479    1576 ..    1475    1577 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 1.5e-09
                       T-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC...TSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEE CS
  Methyltransf_11    4 GcGtGrlaealakrg...arvvgvDlskemlklakekaseeglkvefvvadaek...lpfednsfDlvvssevlhhvedpekalkeiaRvLk 89  
                       G+++G++++ l +      +++   +++++ kla+ek  e + +++f v d+ k     ++d+s+D++++ +++   +d+++al  ++R Lk
       KKY20077.1 1479 GACGGAVSALLSSIHgfaLDYTYASPNAAVQKLAEEKLDEFKTSLNFKVYDIAKpdaSGIKDQSYDIIIAINAFYSTQDVDSALISLKRHLK 1570
                       66788888888843346789999999999999999999998889999999999755347********************************* PP

                       EEEEEE CS
  Methyltransf_11   90 pgGllv 95  
                       pgG+l+
       KKY20077.1 1571 PGGKLC 1576
                       ***997 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.9e-08   1.4e-05       1      97 []    1474    1573 ..    1474    1573 .. 0.77
   2 ?    1.1   0.0      0.89   6.7e+02      36      62 ..    1611    1637 ..    1605    1645 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.9e-08
                       EEEET-TTSHHHHHHHCTS.T.SSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS...SSTTTEEEEEEESTGGGSSHHHHHHHHH CS
  Methyltransf_25    1 vLdlGcGtGrltlalakrl.g.kakvtgvDiseemleaareraeeeglnvefvqgdaedlp...fedgsfDlvvssgalhhlsdedlekalk 87  
                       +L+lG   G  + al+  + g + ++t   ++++  + a+e+++e + +++f + d+ + +    +d+s+D++++++a+   s +d++ al 
       KKY20077.1 1474 ILELGGACGGAVSALLSSIhGfALDYTYASPNAAVQKLAEEKLDEFKTSLNFKVYDIAKPDasgIKDQSYDIIIAINAFY--STQDVDSALI 1563
                       899999999999999988644555555555566666666666655555*********77653337**********98854..567999**** PP

                       HHHHHEEEEE CS
  Methyltransf_25   88 eiarvLkpgG 97  
                        ++r+LkpgG
       KKY20077.1 1564 SLKRHLKPGG 1573
                       *********9 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.89
                       HHHHHHHHTTTTEEEEESBCCGBSSST CS
  Methyltransf_25   36 aareraeeeglnvefvqgdaedlpfed 62  
                         +++++++g+n+efv++d +d +f++
       KKY20077.1 1611 FWESKLKNQGFNIEFVCQDYDDPQFHQ 1637
                       567899999***********9988765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   1.8e-09   1.3e-06       4     150 ..    2198    2347 ..    2195    2358 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.8e-09
                    TSHHHHHHHHHHHTT-E.EEEEESSGGHHHHHHHHHHHTTSE..E...EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-H CS
  adh_short_C2    4 sgIGraiAkalaeeGae.vvltdlneeakkrveelaeelgae..v...lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsr 92  
                     g+G+ +A++l e+Ga+ +++  ++ +   + ++l+++l+++  v   ++cDV+dee++ +++++ ++++  + +++  a + ++  + f++++ 
    KKY20077.1 2198 GGLGQSLAHLLVEHGARcLCFISRSGATSVESKQLVDDLKNKnvVvrvFACDVADEEALSNTIKQGMSDLPPIRGVIQGAMVLRD--SLFENMTH 2290
                    599**************5566666666688899999999976642577*******************************999999..******** PP

                    HHHHHHHHHHTHHHHHHHHHHHHHCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHH CS
  adh_short_C2   93 eefdraldvnlyslfllakaalplmkeg.gsivnlssvgaervvpnynaygaaKaalea 150 
                    +++ + +  ++ + ++l k++l+  k++      lss+++  +  ++  y+aa a   a
    KKY20077.1 2291 SQWTESIRPKVMGSWNLHKQFLE--KDSlDFFTLLSSFAGVFGNRGQGNYAAAGAYQDA 2347
                    *****************999865..3332334445666666666666666666555444 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.2e-08   8.8e-06      77     112 ..     183     218 ..     170     229 .. 0.92
   2 ?   -2.0   0.0       2.4   1.8e+03     113     179 ..    2286    2351 ..    2285    2361 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.2e-08
                 EEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEE CS
  Thiolase_N  77 pavtvnkvcsSglkavalaaqsiaageadvvvagGv 112
                 p+ t n +csSgl a++la+qsi++ge++++v+gG 
  KKY20077.1 183 PSLTTNTACSSGLVALHLACQSIRTGESKMAVVGGS 218
                 78999******************************7 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.4
                  EESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTT..TSEHHHHHHHHHHHHT--HHHHHHHHHH CS
  Thiolase_N  113 Esmsnaptaestdvrsglklgdekakdllipdgladafn..eehmGltaenlakkykisReeqdefAvk 179 
                  E+m++++  es   +    +g+  +++  +++   d+f+    ++G+ +++   +y++    qd+ A  
  KKY20077.1 2286 ENMTHSQWTES---IRPKVMGSWNLHKQFLEKDSLDFFTllSSFAGVFGNRGQGNYAAAGAYQDALAHY 2351
                  89999998887...455667777777766666566777634789********************99965 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   7.3e-08   5.4e-05       6     113 ..    1473    1581 ..    1468    1625 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 7.3e-08
  Methyltransf_31    6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld....nveFeqgdieelekl.ledekfDlilsnevlnaladpdk 92  
                       ++l+lG + G  + +l     + ++ + +D++  + + A +++++ +ld     ++F++ di + + + ++d+++D+i++ ++++ + d d+
       KKY20077.1 1473 KILELGGACGGAVSALL----SSIHGFALDYTYASPNAAVQKLAEEKLDefktSLNFKVYDIAKPDASgIKDQSYDIIIAINAFYSTQDVDS 1560
                       56666666665666555....34555666777666666666666666554445799********9999************************ PP

  Methyltransf_31   93 ileeiervlkpggilliedpr 113 
                       +l +++r lkpgg l++ ++ 
       KKY20077.1 1561 ALISLKRHLKPGGKLCLVEMT 1581
                       ***************998776 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   7.6e-08   5.7e-05       1      61 [.    1871    1926 ..    1871    1956 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 7.6e-08
                  TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE CS
       ADH_N    1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvv 61  
                  pgev i+vka+g++  D++++ g     + ++  lG E++G+v  v  +v+++k Gdr++ 
  KKY20077.1 1871 PGEVEIEVKATGLNFRDVMVAMG-----QIPDSLLGFEASGVVNRVAADVTRFKPGDRICS 1926
                  689*****************999.....577899************************985 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.8e-07   0.00014       2      50 ..    2495    2543 ..    2494    2551 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.8e-07
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveip 50  
                  ++++ va+ l+++++eid + +l ++G+DSl+ave+ ++l +e + e++
  KKY20077.1 2495 AIVQKVAKSLQTSPSEIDTTRPLHSYGVDSLVAVEIRNWLFREAKAEVS 2543
                  79999********************************999777666655 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.9e-05     0.021      40     158 ..    1463    1584 ..    1448    1589 .. 0.79
   2 ?   -1.6   0.0       1.8   1.4e+03      39      72 ..    1969    2004 ..    1961    2018 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.9e-05
                       HHH--S--TTEEEEES-TT-HHHHHHHHHHHH.HHEEEEEES-HHHHHHHHHHHHHHTSS.TEE.EEE--TTT-TTS-T-EEEEEEES-GGG CS
  Ubie_methyltran   40 eklvavkrgakvlDvagGtgDlafklsdsvge.kgkvvvlDinenmLkvgekklkeegki.nie.flqanaeeLpfeddsfDvvtvsfGlrn 128 
                          v ++  +k+l++ g  g    +l++s++    + + +  n+ + k +e+kl e  ++ n + +  a+  +   +d+s+D++     +  
       KKY20077.1 1463 DLSVHTHADSKILELGGACGGAVSALLSSIHGfALDYTYASPNAAVQKLAEEKLDEFKTSlNFKvYDIAKPDASGIKDQSYDIIIAINAFYS 1554
                       44455666778999988888777777777654145788888899999999999988655554442456778888999*******99999*** PP

                       -S-HHHHHHHHHHHEEEEEEEEEEEE---- CS
  Ubie_methyltran  129 vtDklkaLkeayrvlkpGGrlvvlefskve 158 
                       + D + aL ++ r lkpGG+l  +e++++ 
       KKY20077.1 1555 TQDVDSALISLKRHLKPGGKLCLVEMTNPG 1584
                       *************************98875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.8
                       HHHH--S--TTEEE..EES-TT-HHHHHHHHHHHHH CS
  Ubie_methyltran   39 veklvavkrgakvl..DvagGtgDlafklsdsvgek 72  
                       + +++ v++g+++l    agG g  a++l+++ + +
       KKY20077.1 1969 MVNIMRVRPGQSILihAAAGGVGQAAIQLAQHFNME 2004
                       66889999999988445689**********998765 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.051        38      34      83 ..    1980    2033 ..    1961    2061 .. 0.76
   2 !    9.5   0.1     0.001      0.75      12      70 ..    2170    2227 ..    2164    2263 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.051
                     EEEEE--.SHHHHHHHHHHHHCT-EE...EEEEESSEEEEETTEE-HHHHHHHH CS
  ELFV_dehydrog   34 rvaisGs.Gnvgsyaallltelgakv...vavsDssGviydpeGldieellelk 83  
                     ++ i    G vg++a++l+++ ++++   v+ +D++  i +  G++ + +l+ +
     KKY20077.1 1980 SILIHAAaGGVGQAAIQLAQHFNMEIfatVGSIDKKAFIQEHYGISEDHILHSR 2033
                     55555555889999999999999876222566799**********988888764 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.001
                     HHHHHHHHHHHHHTTTS-STTEEEEEE--SHHHHHHHHHHHHCT-EEEEEEESSEEEEE CS
  ELFV_dehydrog   12 lGvvyyveemlkklkldslegkrvaisGsGnvgsyaallltelgakvvavsDssGviyd 70  
                       vv+++++ + +lkl+ ++ + v ++G G +g+  a ll e+ga+++  +  sG+   
     KKY20077.1 2170 DNVVQVLRNPAAELKLK-MNATYVLVGGLGGLGQSLAHLLVEHGARCLCFISRSGATSV 2227
                     56888888889999999.9999**************************99999998654 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       3.8   2.8e+03       6      30 ..    1987    2008 ..    1986    2040 .. 0.74
   2 !   12.8   0.0   0.00014       0.1       3      70 ..    2193    2263 ..    2191    2267 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.8
                       -SHHHHHHHHHHHCTCCT-GEEEEE CS
  Sacchrp_dh_NADP    6 aGsvGqavaellarhfdvdaeitva 30  
                       aG+vGqa+++ la+hf++  ei   
       KKY20077.1 1987 AGGVGQAAIQ-LAQHFNM--EIFAT 2008
                       6*****9997.6889988..55443 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00014
                       EE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH.......TTTCEEEEE--TTTHHHHHHHHHTTS CS
  Sacchrp_dh_NADP    3 iiGa.GsvGqavaellarhfdvdaeitvadrskeklealaaka.......lgvrfeaialdaenyeavLaallkeg 70  
                       ++G+ G+ Gq++a+ll++h+     ++ ++rs +    + +k+       ++v +   a+d++++ea L+  +k+g
       KKY20077.1 2193 LVGGlGGLGQSLAHLLVEHGAR--CLCFISRSGAT--SVESKQlvddlknKNVVVRVFACDVADEEA-LSNTIKQG 2263
                       45555***************87..88889888887..4433335688899999999***********.******98 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   4.3e-05     0.032       3      35 ..     187     219 ..     185     226 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.3e-05
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEE CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigae 35 
                  +n+aCs+ ++al++A + i++g+ k ++v g++
   KKY20077.1 187 TNTACSSGLVALHLACQSIRTGESKMAVVGGSN 219
                  589*******************99999887765 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0002      0.15       3      73 ..    2194    2262 ..    2192    2266 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
                     ETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHH CS
  GDP_Man_Dehyd    3 TGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllae 73  
                      G+ G  G+ la+lL+e g ++  ++ rs ++++++ + +  d k +++  ++++ +D+ D+++l + +++
     KKY20077.1 2194 VGGLGGLGQSLAHLLVEHGARCLCFISRSGATSVESKQLVD-DLK-NKNVVVRVFACDVADEEALSNTIKQ 2262
                     599999*************************9998876554.443.346789*************999986 PP

>> Phage_Coat_B  Phage Coat protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00073      0.55      32      69 ..    2243    2280 ..    2238    2284 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00073
  Phage_Coat_B   32 lpvfaasvidtsavesaitdgksdmkaiggyivgalvi 69  
                    + vfa  v d  a+ ++i +g sd+  i g i ga+v+
    KKY20077.1 2243 VRVFACDVADEEALSNTIKQGMSDLPPIRGVIQGAMVL 2280
                    569*********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 1.38u 0.33s 00:00:01.71 Elapsed: 00:00:00.54
# Mc/sec: 14317.50
//
Query:       KKY20078.1  [L=253]
Description: putative nuclease s1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-59  201.1   3.4    2.1e-42  145.7   0.4    2.0  2  S1-P1_nuclease  S1/P1 Nuclease


Domain annotation for each model (and alignments):
>> S1-P1_nuclease  S1/P1 Nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.3   2.2e-20   3.9e-16       1      69 [.      21      87 ..      21      93 .. 0.90
   2 !  145.7   0.4   1.1e-46   2.1e-42      99     252 ..      85     246 ..      83     247 .. 0.87

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 2.2e-20
                    --HHHHHHHHHHHHCCS-HHHHHHHHHHCTGGCTTTCGGGTTHHHHHTT.STTTGGGGGGG-EEE-SC- CS
  S1-P1_nuclease  1 WgkeGHrtvaeiAqklLspkaakavkellkeeasedlaqvatwaDeiksatkkyretspwHyidtpdek 69
                    Wg +GH++va++Aq ++ ++++++++++l++  ++++a+vatwaD++++ t++  +++p+H++d++d++
      KKY20078.1 21 WGGVGHEAVAYVAQDFVADATKTYIQDILGT-GTSYMAAVATWADTYRY-TDAGGWSAPLHFVDANDSS 87
                    *****************************99.57***************.567************9954 PP

  == domain 2  score: 145.7 bits;  conditional E-value: 1.1e-46
                     CTT.TTTH.HHHHHHHHHHHHHCTSGGGGEECGGHCCTTT-EEEETTEEEEHHHHHHTHHHHHHHCCTSC.CCHHHHHHHHHHHHH..CCCHHHC CS
  S1-P1_nuclease  99 dkkaskaqraealkflvHfvGDiHqPLHtagreedrGGNkikvqfegkktnLHsvWDseiiekiseeksrlsalkeladaleakik..seevksw 191
                     d++++++++  a+kfl+HfvGDiHqPLH++++  d GGN+i+v+++g+ tnLH+vWD+ ++e+  + + + ++++++a++l++ i+  +  + sw
      KKY20078.1  85 DSSSTSDDKLSAIKFLIHFVGDIHQPLHDEAL--DVGGNTISVTYDGEDTNLHHVWDTPMVESLAGGS-TITTARSYATTLTSAIQdgTWSATSW 176
                     66778999********************9999..***************************9999955.5699999*********9885555566 PP

                     C......CHHHHHHHHHHHHHHHHTTS...TTHHCCHCCTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  S1-P1_nuclease 192 e......klsaeawakesnelackvvy...kgaesgetlsdeYyekalpvveeqlakaGvRLAavLnkil 252
                     +      ++++ +wa+++n+++c+ v+    +a +g++ls++Yy+++ +vv+ qla+aG+RLAa+Ln i+
      KKY20078.1 177 TsdmtltQSTVLKWATQANAYVCSDVIpegVDAVEGQDLSTTYYDDHNHVVKIQLARAGYRLAAWLNLIV 246
                     6777885559*************999933333445666*****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.52
# Mc/sec: 1477.77
//
Query:       KKY20079.1  [L=788]
Description: putative aconitate mitochondrial [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.4e-143  478.5   0.0   2.9e-143  478.2   0.0    1.1  1  Aconitase    Aconitase family (aconitate hydratase)
    1.5e-38  132.1   0.0    2.4e-38  131.4   0.0    1.3  1  Aconitase_C  Aconitase C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  478.2   0.0  3.2e-147  2.9e-143       1     461 []      58     509 ..      58     509 .. 0.91

  Alignments for each domain:
  == domain 1  score: 478.2 bits;  conditional E-value: 3.2e-147
   Aconitase   1 ekiwdahlv..ee............eg...iayvpdrvllqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsvgaeealeknledefer 82 
                 eki+++hl   ee            +g   ++ +pdrv++qd+++++al ++++++ +            ++vp+++++dh +  e++++++l +++e 
  KKY20079.1  58 EKILYSHLDnpEEslltntnngqniRGqanLKLKPDRVAMQDASAQMALLQFMSCGLPS-----------TAVPASIHCDHMIVGEKGADTDLPQSIEG 145
                 5677777665411344444444445333234555************************9...........***************************** PP

   Aconitase  83 nkeryefLksaakafgirvvppgqGIvHqvnlEyglalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvta 181
                 nke+++fL+saak++gi+++ppg+GI+Hq++lE+ +  pg +++gtDSHT+++gglG++aiGvGg++a+++l+  p+elk+pk++gv+l+G+l+ ++++
  KKY20079.1 146 NKEVFDFLESAAKRYGIEFWPPGAGIIHQTVLEN-YSAPGLMMLGTDSHTPNAGGLGAIAIGVGGADAVDALVDAPWELKAPKILGVRLEGELSGWASP 243
                 **********************************.**************************************************************** PP

   Aconitase 182 kDlvlavigklrkkgvvgkvvEffGegvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgreeaavlveaydkaqalf.elaadedaeydkv 279
                 kD++l+++g+l+++g++g+++E++G+gve+Ls++++aT +NM+aEvGAtt++fp+ ++ + YLkatgr     +v+ ++   + f  l+ad++aeyd+ 
  KKY20079.1 244 KDIILYLVGQLTVRGGTGYIIEYHGPGVETLSCTGMATACNMGAEVGATTSIFPFVQNHVPYLKATGRVRMVDAVQGIAFGPSRFnFLKADSGAEYDQL 342
                 ********************************************************************666645566555556663499********** PP

   Aconitase 280 leldlstlepsvagpkrPqdavplselvkkefkeelekeaaekaleyklkegtklkdgkvdiaaigSCTNssnedvraaagllakavekglkvkpgvkt 378
                 ++++lstlep+++gp++P+ ++pls+++     e++            + ++++ +     +++igSCTNss+ed+++a +l+++a+++gl++k+  ++
  KKY20079.1 343 ITINLSTLEPHINGPFTPDLSTPLSKFA-----EAV------------KINNWPET---FGAGLIGSCTNSSYEDMTRAEDLVKQAQAAGLRPKA--DF 419
                 ************************6665.....444............45789999...99*****************************99999..** PP

   Aconitase 379 svaPGSevvkayleaeGlleiLekaGfevvgagCstCignsdrle.....egeaivsssNRNFegRq..gpntrayLaSPelvvaaAlaG 461
                 +++PGSe+v+a+l+ + +l+++ +aG +v++++C++Cig+++r +     e +ai++s+NRNF gR+  +++t+++LaSPe+v+a+A +G
  KKY20079.1 420 FITPGSEQVRATLQDSQTLDTFSSAGGTVLANACGPCIGQWKRTDdvkkgESNAILTSYNRNFPGRNdgNRGTMNFLASPEIVTAMAYSG 509
                 *******************************************9888766666**************64466777************988 PP

>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.4   0.0   2.7e-42   2.4e-38       2     129 ..     589     715 ..     588     717 .. 0.97

  Alignments for each domain:
  == domain 1  score: 131.4 bits;  conditional E-value: 2.7e-42
                  CCCCCCTT--CHHHHSTGGGCCGHCCHHHCCCGGTTTCCCCTTTSBBSEEEETTTTEEEEHHHHHHHHHHTT--EEEE--SSBTBS---THHHHHHHH CS
  Aconitase_C   2 ekllklkGlttedeksnvdtdlkipkqfegtianiglgnelveekrankttdlddgekedvvdaaerykkegaklvviagknfGeGSSRehAAkalrl 99 
                  ++l k+kG +t+d +s+++++lk+++++ ++++n+ +g+ ++ + + n ++d+ dg k ++++ a ++k+eg++++v+a++n+GeGS+RehAA+++r 
   KKY20079.1 589 NVLYKVKGQCTTDTISAAGPWLKYKGHLPNISENTLIGAVNAATGETNVAYDF-DGSKASIPELAAKWKSEGRSWLVVAEDNYGEGSAREHAALQPRY 685
                  57889***********************************************9.66999*************************************** PP

                  TTEEEEEES-B-HHHHHHHHHTT-EEEEES CS
  Aconitase_C 100 lGikaviaeSFerIfennliknglLplefk 129
                  lG+++++++SF+rI+e+nl+k+g++pl+f 
   KKY20079.1 686 LGGRVILSKSFARIHETNLKKQGVVPLTFV 715
                  ***************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.35s 00:00:01.06 Elapsed: 00:00:00.53
# Mc/sec: 4458.04
//
Query:       KKY20080.1  [L=445]
Description: hypothetical protein UCRPC4_g04269 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-48  162.3   1.7    2.3e-29  102.7   0.1    5.3  4  DUF2408     Protein of unknown function (DUF2408)
    0.00041   20.5   0.5       0.15   12.3   0.1    3.1  3  SesA        N-terminal domain on NACHT_NTPase and P-loop NTPa
  ------ inclusion threshold ------
      0.029   14.2   0.7          2    8.2   0.1    3.0  3  Baculo_p24  Baculovirus P24 capsid protein
      0.039   13.8   0.2       0.44   10.5   0.0    2.8  2  AAA_lid_8   AAA lid domain
       0.17   12.4   1.4          6    7.3   0.2    2.8  3  TBCC_N      Tubulin-specific chaperone C N-terminal domain


Domain annotation for each model (and alignments):
>> DUF2408  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.8    0.0001      0.36       6     125 ..      13     135 ..      10     141 .. 0.68
   2 !  102.7   0.1   6.3e-33   2.3e-29       1     135 []     172     292 ..     172     292 .. 0.97
   3 !   20.1   0.0     2e-07   0.00073      46     122 ..     297     369 ..     293     373 .. 0.93
   4 !   20.9   0.0   1.2e-07   0.00042      42      98 ..     382     434 ..     372     443 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0001
     DUF2408   6 pelepiyekLvsirrsLlslaakskaeeakeseevkeelkelkeeLkkieskrdeegkFkseegkevvekgqavlngLlddcfdlvedlkaqd...... 98 
                 p+ +pi++ Lvsir +Ll l  + ++    +s++v    +e+ e+++++++ r+e            v  +q+ +++Llddcf+l++ + +        
  KKY20080.1  13 PREKPILDDLVSIRDKLLLLKQDRSTY--VKSQDVMPLYDEVIEQVHRLNNIRVE------------VGLEQNRVDTLLDDCFQLISLFFMTIgrnnea 97 
                 556789999999999998887776665..44444555555555555555555555............23458999***********9988877777778 PP

     DUF2408  99 ...........geekkvasslqpiYdrLleikttLenL 125
                               ++++++    +++L +i +tLe++
  KKY20080.1  98 pavysmtstisRLLDHLKEAAFYSFKDLNSIENTLEKM 135
                 88887776665333455555556677777777777776 PP

  == domain 2  score: 102.7 bits;  conditional E-value: 6.3e-33
     DUF2408   1 leelspelepiyekLvsirrsLlslaakskaeeakeseevkeelkelkeeLkkieskrdeegkFkseegkevvekgqavlngLlddcfdlvedlkaqdg 99 
                 l+++spel+p +ekLvsi+r  ++ +++sk++        ++e++ +k+eL +ie++ ++  kF+ e+g  + + gq++  gLld+c+++++ + ++  
  KKY20080.1 172 LSSISPELMPKWEKLVSILRAAAAANTRSKFN--------AAEIEGFKRELLEIEATMKD-HKFVAEDG--HIPPGQELTVGLLDRCLKWCDIVLEK-- 257
                 789****************************9........99******************.***99998..899********************999.. PP

     DUF2408 100 eekkvasslqpiYdrLleikttLenLllTrrWtLRE 135
                  ++k++++++++Y++Ll+i+++L++L++T++W+LRE
  KKY20080.1 258 -QGKIEPAFEETYEQLLTIRNHLDKLTMTQAWSLRE 292
                 .689*******************************9 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 2e-07
     DUF2408  46 elkeeLkkieskrdeegkFkseegkevvekgqavlngLlddcfdlvedlkaqdgeekkvasslqpiYdrLleikttL 122
                  l+++L +i+++r+e g+F   +g+ ++ + q+ l  Ll++++  +  l  +   ++ v+++l p+Y++L+++++ L
  KKY20080.1 297 MLQRKLDRIDDSRKE-GNFWCPQGNCASLHTQRTLLYLLRRSYAYIYYLLVS---SEPVSEALLPVYNQLQTLRRCL 369
                 6899***********.********999*************************...579****************977 PP

  == domain 4  score: 20.9 bits;  conditional E-value: 1.2e-07
     DUF2408  42 eelkelkeeLkkieskrdeegkFkseegkevvekgqavlngLlddcfdlvedlkaqd 98 
                  el +++ +L++i++ r++ gkF+ +++    ++gq  + gLl +c+dl+ +l++  
  KKY20080.1 382 RELYPYSMKLNSIDNMRVD-GKFMIGKD---IPEGQGSVIGLLSECYDLAYELRTAA 434
                 57889999***********.***77776...89********************9885 PP

>> SesA  N-terminal domain on NACHT_NTPase and P-loop NTPases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.58   2.1e+03      55      83 ..      35      66 ..      18      84 .. 0.60
   2 !   12.3   0.1   4.1e-05      0.15      14      92 ..     100     186 ..      90     216 .. 0.74
   3 !    4.8   0.0    0.0086        31       4      46 ..     240     283 ..     238     306 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.58
        SesA 55 dedtesa...ikpvlesckekatkleeifekv 83
                d +t  +   ++p+ +++ e++++l++i  +v
  KKY20080.1 35 DRSTYVKsqdVMPLYDEVIEQVHRLNNIRVEV 66
                33333333347888888888888888887776 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 4.1e-05
        SesA  14 lydaikdikglpeaFrevg....krLplvqetLedaksqlesskldedtesa..ikpvlesckekatkleeifekv..apapadsrl 92 
                 +y+  ++i++l   ++e++    k L  +++tLe+ +++le++k+  +      +++ ++ ck+ +++l++ +  +  +  p++++l
  KKY20080.1 100 VYSMTSTISRLLDHLKEAAfysfKDLNSIENTLEKMHDTLERGKETYSPHLLvlMENRIQVCKKIVQSLKDYLSSIspELMPKWEKL 186
                 56666666666666666554444889*******************999888799*******************99933222333333 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0086
        SesA   4 tiaiveaaiklydaikd.ikglpeaFrevgkrLplvqetLedak 46 
                 t+++++   k +d + +   ++ +aF+e  ++L ++++ L++ +
  KKY20080.1 240 TVGLLDRCLKWCDIVLEkQGKIEPAFEETYEQLLTIRNHLDKLT 283
                 788899999999988665889******************99876 PP

>> Baculo_p24  Baculovirus P24 capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1   0.00055         2      90     170 ..     102     192 ..      81     204 .. 0.68
   2 ?    1.5   0.0     0.061   2.2e+02      96     132 ..     251     287 ..     246     313 .. 0.77
   3 ?    0.5   0.0      0.12   4.4e+02     106     129 ..     351     374 ..     325     405 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00055
  Baculo_p24  90 vlkqLvrDLlvGaqse...avdplkdiktqlctlqecleesnvlvn.......sttesssnenieslreilrseeasllsnlnsllesiks 170
                 ++ + ++ Ll   ++    +++ l+ i+++l++++++le+++++ +       +++ +  ++ ++sl++ l s + +l+ + ++l+++++ 
  KKY20080.1 102 SMTSTISRLLDHLKEAafySFKDLNSIENTLEKMHDTLERGKETYSphllvlmENRIQVCKKIVQSLKDYLSSISPELMPKWEKLVSILRA 192
                 44444544444444444447899******************99988666664322222225788888888888888888888887777765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.061
  Baculo_p24  96 rDLlvGaqseavdplkdiktqlctlqecleesnvlvn 132
                 +D+++ +q ++   +++  +ql t+++ l++ +++ +
  KKY20080.1 251 CDIVLEKQGKIEPAFEETYEQLLTIRNHLDKLTMTQA 287
                 899***********************99997665443 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.12
  Baculo_p24 106 avdplkdiktqlctlqecleesnv 129
                 + + l  + +ql+tl++cl e ++
  KKY20080.1 351 VSEALLPVYNQLQTLRRCLVEVKK 374
                 667788999**********97664 PP

>> AAA_lid_8  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00012      0.44      26      50 ..     182     206 ..     162     216 .. 0.83
   2 ?   -0.7   0.0      0.38   1.4e+03       3      16 ..     269     282 ..     267     305 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
   AAA_lid_8  26 RwkkivkllkasAylngrdevnlsD 50 
                 +w k v++l+a+A  n r++ n+ +
  KKY20080.1 182 KWEKLVSILRAAAAANTRSKFNAAE 206
                 8*****************9988765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.38
   AAA_lid_8   3 lelileiknkleee 16 
                 +e +l+i+n+l++ 
  KKY20080.1 269 YEQLLTIRNHLDKL 282
                 67889999999874 PP

>> TBCC_N  Tubulin-specific chaperone C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.012        42      43     114 ..      71     148 ..      62     149 .. 0.81
   2 ?    7.3   0.2    0.0017         6      62     115 ..     129     182 ..     122     182 .. 0.78
   3 ?   -3.4   0.0       3.7   1.3e+04      44      53 ..     274     283 ..     258     308 .. 0.52

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.012
      TBCC_N  43 aaieellesve.......esadksklkqkldeitaeiqeLqkllaessmfLpsY.dlrsaqealskLkesleeareellP 114
                 + +++ll+++         +  +++++  +  +t+ i++L + l e+ ++  s+ dl s+ ++l+k++++le  +e++ P
  KKY20080.1  71 NRVDTLLDDCFqlislffMTIGRNNEAPAVYSMTSTISRLLDHLKEAAFY--SFkDLNSIENTLEKMHDTLERGKETYSP 148
                 55666666665566666677888899999999999999999999999887..44389****************9999988 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0017
      TBCC_N  62 kqkldeitaeiqeLqkllaessmfLpsYdlrsaqealskLkesleeareellPk 115
                 ++ l+++   +++ ++ ++   + L +  ++ +++++++Lk+ l ++  el+Pk
  KKY20080.1 129 ENTLEKMHDTLERGKETYSPHLLVLMENRIQVCKKIVQSLKDYLSSISPELMPK 182
                 555555555555556666667788888899***********************8 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.7
      TBCC_N  44 aieellesve 53 
                  i++ l++++
  KKY20080.1 274 TIRNHLDKLT 283
                 3444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.46
# Mc/sec: 2896.19
//
Query:       KKY20081.1  [L=111]
Description: putative 60s acidic ribosomal protein p1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.7e-28   96.7  11.5    1.1e-27   96.5  11.5    1.1  1  Ribosomal_60s  60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5  11.5     6e-32   1.1e-27       1      88 []      21     110 ..      21     110 .. 0.82

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 6e-32
                    XXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX.XX--SS--STTT CS
  Ribosomal_60s   1 eptaenikkvlkaagv.eveaarvkllvkalegkdieellangaaklaaaaaaaaaaaaaaaa.aaaaeekkkeeeeeEeedddmGfgLF 88 
                    e+ta+++++++kaagv eve+++++l++kalegkd++++l n+++++ aaaaa+aa++aaa++ a+aa+e++k+eee+Ee+d+dmGfgLF
     KKY20081.1  21 EITADKLNTLIKAAGVqEVEPIWASLFAKALEGKDVKDILVNVGSGGGAAAAAPAAGGAAAGGdAPAAAEEEKKEEEKEESDEDMGFGLF 110
                    79**************89***************************9997777776666555541444444444555559*********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 754.70
//
Query:       KKY20082.1  [L=263]
Description: putative c6 zinc finger domain containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.1   0.0       0.23   11.3   0.0    1.4  1  TetR_C_1  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_C_1  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.3e-05      0.23       2      32 ..      10      41 ..       9      45 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.3e-05
                -.STTS-HHHHHHHHHHHHHHHHHTSTTHHHH CS
    TetR_C_1  2 P.degedWrerlrelarslrrallrhrdlarl 32
                P d+g++W+++l ++  +l++ +++++d+ +l
  KKY20082.1 10 PlDPGQSWQDWLDSMENKLKKWYREYADGHEL 41
                657899**********************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 1643.89
//
Query:       KKY20083.1  [L=711]
Description: putative isoflavone reductase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-36  125.6   0.1      3e-36  125.1   0.1    1.2  1  NmrA             NmrA-like family
    2.2e-14   53.8   0.0    6.7e-14   52.2   0.0    1.8  1  NAD_binding_10   NAD(P)H-binding
    8.4e-14   51.2   0.4    1.2e-13   50.7   0.4    1.3  1  Fungal_trans     Fungal specific transcription factor domain
    6.9e-07   28.5   0.1    1.2e-06   27.8   0.1    1.3  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    3.4e-06   26.7   0.0     0.0063   16.0   0.0    2.4  2  Epimerase        NAD dependent epimerase/dehydratase family
    0.00061   20.2   0.1     0.0025   18.3   0.0    2.0  2  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
  ------ inclusion threshold ------
      0.013   14.7   0.1      0.025   13.7   0.1    1.5  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.024   14.5   0.1      0.044   13.7   0.1    1.3  1  KR               KR domain


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   0.1   1.4e-39     3e-36       1     232 [.     411     647 ..     411     648 .. 0.93

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 1.4e-39
                 EEESSTTSHHHHHHHHHHHH..HT-E.EEEEES-S....-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GGS-HHHHHHHHHHHHHHH CS
        NmrA   1 IlviGaTGrqGksvvrallk..aghk.vralvRdt....kselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfyskeiedgkklvdAakea 92 
                 Il +GaTG++G+++ ra++   ++++ + + +  t    k   ++sl ++ v ++ gd+ +++ +v+a +g dvv+s++g  +  i+ + +l++ +kea
  KKY20083.1 411 ILLFGATGNIGQHILRAIITskSNFSqISIFTSPTtvqsKAPFIASLTNSNVHVLMGDVTSRSDVVKACQGYDVVISAVG--RGVIASQIELISWIKEA 507
                 899**************99866566414555544488889999*************************************..***************** PP

                 S-SEEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHHHHH CS
        NmrA  93 GvkhfiySslgddndrsnaeepavphfdsKaeieeyvralgipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGafvi 191
                 Gvk f++S++g d  ++  +  + + +++K +++e ++++g+ yt+v+ g + e fl+++ + + g+ + +e+k++llg+g+ k  +  a  D+G+fv+
  KKY20083.1 508 GVKWFFPSEYGTDI-KYGPKSKDEKPHQAKLKVRENLEKSGLDYTYVVVGPYPEMFLKSVLPPEYGSFDVKEKKAVLLGDGEEKVGFT-AMPDVGKFVV 604
                 **************.788888899999*******************************************************988888.********** PP

                 HHHHHHHHHTTEEEEE-SEEE-HHHHHHHHHHHHTS-..EEEE CS
        NmrA 192 kilkdprklkgkriklagntlsgneivelfekkigkt..vkYt 232
                 ++l +p+  k++++ + + t +++eiv+ fek+++ +  v+Yt
  KKY20083.1 605 AALLHPEVSKNRALIVNSFTTTPHEIVKEFEKQTNSKwtVTYT 647
                 *********************************9986558886 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0     3e-17   6.7e-14       1     184 []     415     610 ..     415     610 .. 0.74

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 3e-17
                     TTTSHHHHHHHHHHHHC-.T-EEEEEETTHHHCH.......HHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHHHHHHHHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellarg.ghevtalvRnpekla.......eleaeeglevvegdvtdvedlaealkgadaVvsalggggkdeegaknivdaake 87 
                     GAtG++G+++++ ++ ++ +++   +  +p  ++       +l  +++++v+ gdvt+ +d+ +a++g+d+V+sa+g+g     + + ++   ke
      KKY20083.1 415 GATGNIGQHILRAIITSKsNFSQISIFTSPTTVQskapfiaSL-TNSNVHVLMGDVTSRSDVVKACQGYDVVISAVGRGVI--ASQIELISWIKE 506
                     9***************999999999988876665333333334.689******************************8876..57899******* PP

                     CT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-C...............EE-ST--SEEEEETTSS----E CS
  NAD_binding_10  88 agvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpgg...............Ltdepttkyrvvekgepfkggs 167
                     agvk f   s  g++     + g+  k+  ++ ++ak +  e l++sgld+T v  g                  d +++k +++ +ge+   g 
      KKY20083.1 507 AGVKWFFP-SEYGTDI----KYGPKSKD--EKPHQAKLKVRENLEKSGLDYTYVVVGPypemflksvlppeygSFDVKEKKAVLLGDGEEKV-GF 593
                     ***99988.6677773....33333333..46789******************988775555555544443332333344444444444433.46 PP

                     EEHHHHHHHHHHHCTXG CS
  NAD_binding_10 168 isradVAdvlvavlddp 184
                     ++  dV +++va+l +p
      KKY20083.1 594 TAMPDVGKFVVAALLHP 610
                     78888888888888765 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.4   5.5e-17   1.2e-13      53     195 ..     132     261 ..      72     290 .. 0.75

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 5.5e-17
  Fungal_trans  53 setkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeea 149
                   +++++++  + +++     f+ +a +++ e+ +s++s +++l +Llll ++ + +  +   ++++  a+rl+ +lg h +++ ++       +e+++
    KKY20083.1 132 NQSRYQSWYSGESM----IFHSEALKCL-EEVTSEVS-VESLVALLLLIVFGQFYPQKGDLWKLLDYACRLSIELGYHTEQAAEN------EDEKQK 216
                   33333322333322....3666777777.89999999.***********************************************......****** PP

  Fungal_trans 150 esrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlwes 195
                    +rr+++w+ + ++++    +Grp  l +s+i+ ++P+  + + ++
    KKY20083.1 217 LRRRKIFWGLYAMERIAGQLFGRPADLLESNITAEYPETHS-IIDT 261
                   *************************889*********9877.4444 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.1   5.4e-10   1.2e-06       2      75 ..     413     490 ..     412     502 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 5.4e-10
   3Beta_HSD   2 vtGgaGFlGralvkeLvrlee.lkevrvlD....lrespelleelskvnvkkviegDvtdkdkleealegvdvvihlas 75 
                 + G++G +G+++ ++++  ++   ++ ++     ++ + +   +l+++nv+ v+ gDvt+ +++ +a++g dvvi   +
  KKY20083.1 413 LFGATGNIGQHILRAIITSKSnFSQISIFTspttVQSKAPFIASLTNSNVH-VLMGDVTSRSDVVKACQGYDVVISAVG 490
                 57****************99989******9888888888899999999999.**********************98765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.8e-06    0.0063       1      81 [.     411     498 ..     411     509 .. 0.84
   2 !    8.4   0.0    0.0006       1.3     172     235 ..     554     616 ..     523     621 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.8e-06
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrsalerlfkeeqpdavihlAavggvaass 81 
                 il+ GatG iG+++++a+ + + +   ++  +s    ++++           ++  +d+t rs++ ++++  + d+vi + + g +a ++
  KKY20083.1 411 ILLFGATGNIGQHILRAIITSKSNFSQISIFTSPTTVQSKAPFiasltnsnvHVLMGDVTSRSDVVKACQ--GYDVVISAVGRGVIASQI 498
                 7999******************77777776665555555555577889**99******************..9******98888777665 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0006
                 EESTTS-TTSTTSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STT CS
   Epimerase 172 lyGprngegevsrvipalirkilegkqevtllgdgtalRdflyveDvaeaillvlehvdagdkg 235
                 ++Gp+ +e + ++v+p    ++  ++++ +llgdg+++  f    Dv + ++++l h++  +++
  KKY20083.1 554 VVGPY-PEMFLKSVLPPEYGSFDVKEKKAVLLGDGEEKVGFTAMPDVGKFVVAALLHPEVSKNR 616
                 78999.8888999999999999998899*****************************9986654 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.1e-06    0.0025       3      93 ..     412     511 ..     410     515 .. 0.76
   2 ?   -1.8   0.0       1.8     4e+03      71      86 ..     623     638 ..     604     645 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.1e-06
                     EEETTTSHHHHHHHHHHHC.TSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEE.GGGGGC....TT-SEEEE-SCHHHHHHHHHHH...HH CS
  Semialdhyde_dh   3 aivGatGyvGqellrlLee.hpevelvvllsssrsaGkklaeavkaleegkdlkved.vdeeel....kevdivflalpagvskelapkl...ae 88 
                      + GatG++Gq +lr + + + +++ + +++s     +k  + ++ ++++  + + d ++  ++    ++ d+v++a++ gv ++  + +    e
      KKY20083.1 412 LLFGATGNIGQHILRAIITsKSNFSQISIFTSPTTVQSKAPFIASLTNSNVHVLMGDvTSRSDVvkacQGYDVVISAVGRGVIASQIELIswiKE 506
                     688**********998888799************9999999998855566666555543333333345899**********99876555444477 PP

                     TTSEE CS
  Semialdhyde_dh  89 agvkv 93 
                     agvk+
      KKY20083.1 507 AGVKW 511
                     77777 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.8
                     EE-SCHHHHHHHHHHH CS
  Semialdhyde_dh  71 flalpagvskelapkl 86 
                     f+ +p+++ ke++++ 
      KKY20083.1 623 FTTTPHEIVKEFEKQT 638
                     8899*******99987 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.1e-05     0.025       1      84 [.     411     488 ..     411     492 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
                      EEEETTTSHHHHHHHHHHHHH..B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE- CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkk..kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfha 84 
                      +l+ Ga+G iG++++r i+++  + ++i ++ +  + + +      ++l+++++    ++++gdv+ ++ + ka++  + dvv+ a
       KKY20083.1 411 ILLFGATGNIGQHILRAIITSksNFSQISIFTSPTTVQSKAPF--IASLTNSNV----HVLMGDVTSRSDVVKACQ--GYDVVISA 488
                      6889**************98866889*****988777665544..345555555....466***************..77777765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1     2e-05     0.044       3      76 ..     411     483 ..     410     498 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2e-05
                 EEEETTTSHHHHHHHHHHHHHH..S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHH CS
          KR   3 ylitGGlGgLGlelarwlaekg..arhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeik 76 
                  l+ G++G++G+++ r ++ +    +++ +++   ++ ++++ +ia+l++   +v+v+  Dv+++++v ++ + ++
  KKY20083.1 411 ILLFGATGNIGQHILRAIITSKsnFSQISIFTSP-TTVQSKAPFIASLTN--SNVHVLMGDVTSRSDVVKACQGYD 483
                 5899*************99754346677665555.355556669999987..78999***********99988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 4530.77
//
Query:       KKY20086.1  [L=356]
Description: putative adenosine kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-67  228.4   0.1    1.4e-67  228.2   0.1    1.1  1  PfkB          pfkB family carbohydrate kinase
    3.8e-05   23.2   0.1    0.00012   21.6   0.0    1.7  2  Phos_pyr_kin  Phosphomethylpyrimidine kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.2   0.1   1.5e-71   1.4e-67       3     295 ..      27     355 ..      25     356 .] 0.96

  Alignments for each domain:
  == domain 1  score: 228.2 bits;  conditional E-value: 1.5e-71
                 EEEEEEEEEEEEEEECSSH.TTSEE.EESEEEEEEESHHHHHHHHHHHTT....................-EEEEEEEEESSHHHHHHHHHHHHTTEEE CS
        PfkB   3 kvvviGealidliavsekl.egelv.evktveksaGGagaNvAvalarlg....................advafigavGdDnfGeflleelkkegvdt 79 
                  ++++G++ +d+i++++k+         ++ +  aGGa++N+A++++                       ++v++ig+vG+D+++++l + ++ egv t
  KKY20086.1  27 LLEKYGLKANDAILAEDKHmTLYDElLSRDAKIIAGGAAQNTARGAQVSLsrynyqglklrtiqqyclppNSVWYIGCVGKDDAAKQLTTACENEGVHT 125
                 6899****************4444448899999***************999************************************************ PP

                 TTEEEESSSEEEEEEEEETTTSEEEEEEEEGGGGGHHHHHHH..HHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHH.HHH CS
        PfkB  80 dyvkidedtrtglalivvdedgertivfnrgaaadltkeele..ededlleeadllyisgllsselpeavleelaeaaknggtfdpnlldplgaq.fke 175
                 +y + d+ ++tg++ ++++++  r++v+++ aa++++ ++l   ++++l+e+ +++yi+g + +++p a+l++ +eaa++++ f + +++p++ q fk+
  KKY20086.1 126 EYRI-DDAQPTGKCGVIITGH-HRSMVTHLAAANEYKLDHLTqpHVWSLVEKTSVFYIGGYHLTVCPPAILKLGEEAASKNKIFALGFSAPFILQfFKD 222
                 7766.6667**********98.7******************9********************************************************* PP

                 HHHHHHCTESEEEEEHHHHHHHHTSCT......HSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEE.......TTEEEEEEE.SSSS-SBGTTHHHHH CS
        PfkB 176 allellaladllkpneeElealtgekl......edieealaalhklkakgaktvvvtlGkeGalvve.......kdgelkvpavpkvkvvDttGAGDsf 261
                  l e+l+++d++++ne+E+ea++++++       +i++++a+l+k ++k+++tv++t+G e+++ +         ++e+ v+a++++++ Dt+GAGD+f
  KKY20086.1 223 PLAEVLPYTDYIFCNEAEAEAWAQANGhetksvPEIAKLIAKLPKKNEKRPRTVIITQGTEPTISAIakadgdvDVKEYSVHAIREEQINDTNGAGDAF 321
                 ****************************************************************999999***************************** PP

                 HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSSSS CS
        PfkB 262 vggflaallegksleealrfanavAalvvqkkga 295
                 +ggf+aal+egk+le ++  ++++A l +q+ ga
  KKY20086.1 322 AGGFMAALVEGKPLEACVDQGQWLARLGIQELGA 355
                 ******************************9998 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.21   1.9e+03     153     167 ..     134     148 ..     111     169 .. 0.66
   2 !   21.6   0.0   1.3e-08   0.00012     115     225 ..     226     343 ..     216     352 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.21
                   HTT-SEEEEEEGGS- CS
  Phos_pyr_kin 153 klgakaVlikGghle 167
                    +g+  V+i+G h +
    KKY20086.1 134 PTGKCGVIITGHHRS 148
                   467788888888842 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 1.3e-08
                   HTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHHT......T-SEEEEEEGGS-S....SSEEEEEEEETSSEEEEEEEE----S--BTHHH CS
  Phos_pyr_kin 115 eLlplatvitPNlpEaeaLlgekikteedmkeaakkllkl......gakaVlikGghleg....eeavvtdvlydgeeveeleaerietknthGtGC 201
                   e+lp ++ i  N +Eaea ++ + ++++++ e ak ++kl        ++V+i+ g  ++     +a   dv +++ +v+ +++e+i+  +t+G+G+
    KKY20086.1 226 EVLPYTDYIFCNEAEAEAWAQANGHETKSVPEIAKLIAKLpkknekRPRTVIITQGTEPTisaiAKAD-GDVDVKEYSVHAIREEQIN--DTNGAGD 319
                   58999**************9966666666666666666553334445678999988766666653333.59999**************..9****** PP

                   HHHHHHHHHHHCTSSHHHHHHHHH CS
  Phos_pyr_kin 202 tlssaiaaelakgesleeAvkkAk 225
                   +++    a l +g++le  v++++
    KKY20086.1 320 AFAGGFMAALVEGKPLEACVDQGQ 343
                   ********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2313.84
//
Query:       KKY20087.1  [L=513]
Description: putative smg protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-52  177.6   0.7    7.2e-52  176.6   0.1    1.8  3  EST1_DNA_bind  Est1 DNA/RNA binding domain
    1.9e-22   80.3   0.3    1.2e-21   77.8   0.1    2.1  2  EST1           Telomerase activating protein Est1


Domain annotation for each model (and alignments):
>> EST1_DNA_bind  Est1 DNA/RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.23   2.1e+03     212     249 ..       4      46 ..       1      66 [. 0.76
   2 ?   -2.8   0.0      0.38   3.4e+03      52      99 ..      55     103 ..      47     122 .. 0.63
   3 !  176.6   0.1     8e-56   7.2e-52       1     281 [.     184     465 ..     184     466 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.23
                    HHHHHHTT-H....HHHHHHHT-HHHHHHHHHHHHHHHH-.-- CS
  EST1_DNA_bind 212 vylswlksnk....slledvekdeklvsslsdllnellss.el 249
                    ++ +wlk  k    +l++ + +++++++ + +ll++++++ e+
     KKY20087.1   4 TSEEWLKKFKaaekDLYKSLAQKDPTFAEIDTLLTRIRNAfEN 46 
                    6678888888666677799999999999999999998885544 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.38
                    HHHHHHHHHT-TT-HHHHHHHHHHHHH.TT---HHHHHHHHHHTTHHHH CS
  EST1_DNA_bind  52 AkeNLellfekirkklekgenkqskes.kqektpeellkrliilFlrlh 99 
                    A++ L ++ +ki++++ k+++k   e+ k +  ++++l++  + F++  
     KKY20087.1  55 AETRLWDAHSKINGRYRKQLSKFHGEEgKRRPVEKRKLEKHYVDFIKSS 103
                    5555555556667777777777666665555455555555555555544 PP

  == domain 3  score: 176.6 bits;  conditional E-value: 8e-56
                    HHHHHHHHHHH-TTBHHHHHHHHHHHHHTT-HHHHHHHHHHHHHBSB--TTHHHHHHHHHT-TT-HHHHHHHHHHHHHTT---HHHHHHHHHHTTH CS
  EST1_DNA_bind   1 AlrYYllAaellPsnGepyNQlgviaiysedkldavYyylRSllssnpfptAkeNLellfekirkklekgenkqskeskqektpeellkrliilFl 96 
                    A  YY+lA  +  ++G p+NQ++via++++++l+a Y+++R++++++p+p+A++NL ++f+ki    ek e  +       + +++++ ++++ Fl
     KKY20087.1 184 ATGYYELALSINKESGLPHNQMAVIALADGNHLRALYRLYRAQAVKSPHPSARNNLDIEFSKIIHLKEKNELFSQGG---IRGGVSAERTVEAWFL 276
                    678************************************************************88777777776664...78899999999***** PP

                    HHHHHHHSTTTT....TSSTTGHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHH-S--SXXXXXXXXX....XXXXHHHHHHHHHHHHH CS
  EST1_DNA_bind  97 rlhgklftgtsf.k.delerevlkklqillseslkernlk.daslllkmllinifaienlkdkssgeeskektll....llrlalrfifelfglll 185
                    + h+ + +g  + +  + e+e+l++l++ll++++ e+ l+ + sll +++lini+a++++++   +++ +e  l+    + +l+l+++  l++ ++
     KKY20087.1 277 YFHARCDKGAQWaEyEDAENELLSQLSVLLKDRPVEGQLErSTSLLQRVTLINIAAEYVARQRAAEQKDNEGFLAayrfYEQLNLKTFSNLLHIMT 372
                    ************75799********************99999*************************988877779******************** PP

                    HHTGGGTTT.....-SS-THHHHHHHHHHHHHTT-HHHHHHHHT-HHHHHHHHHHHHHHHH-.---------------S.S--HHHHHTTTBGGGT CS
  EST1_DNA_bind 186 ekvetlealkrdketpsatrvLpalrvylswlksnkslledvekdeklvsslsdllnellss.ellnksfdvekdpkrd.ylleEDielkgFsplk 279
                     ++ ++ +l     t++++r+Lpalr y+ wl +n s+l   + d  l   ++ +++ ++++ ++l  +f+ve+ p+   y+l+ED +++gF+pl+
     KKY20087.1 373 GELAEKGEL-----TSVLRRILPALRNYSGWLLTNVSFLVAQHDDPFLGMHIKFFWTTYAKAlTSLAATFPVENLPAPIsYMLSEDEDTIGFVPLY 463
                    *********.....*************************88888888889999***********************6669***************9 PP

                    TS CS
  EST1_DNA_bind 280 ea 281
                    ++
     KKY20087.1 464 ND 465
                    75 PP

>> EST1  Telomerase activating protein Est1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.1   1.3e-25   1.2e-21       2     133 ..      55     171 ..      54     173 .. 0.81
   2 ?    0.1   0.0      0.13   1.2e+03      33      66 ..     333     366 ..     300     490 .. 0.76

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 1.3e-25
                 HHHHHHHHTHHHHHHHHHHHHHHHH-------H.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-B-..HTT............-.....-----.-- CS
        EST1   2 veellWrkvyyevikllkkqlknldsapkkkkkpvekrklklklvkflksaigfYqsliqrllsefel..elssvlkvilksktklpekessekse.te 97 
                 +e+ lW  ++ +++  ++kql++   +++ k++pvekrkl++++v f+ks+ +fY+  iqrl+s++    +   +++v  k              + + 
  KKY20087.1  55 AETRLWD-AHSKINGRYRKQLSKFH-GEEGKRRPVEKRKLEKHYVDFIKSSMRFYRGHIQRLASQHPAikD---LAQVAGK-------------LNmDT 135
                 799****.***************99.55699**********************************873332...3332222.............22222 PP

                 --TTB--TTSHHH.HHHHHHHHHHHHHHHHHHHHHH CS
        EST1  98 seeeksslssseqksavlklvhrcLiyLGDlaRYre 133
                  +  + s +++e k+a l+++h +Li+LGDl+RYre
  KKY20087.1 136 TTIDEVSVPTEEVKKATLQSCHATLIRLGDLSRYRE 171
                 333445668888889********************8 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.13
                 -H.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        EST1  33 kkpvekrklklklvkflksaigfYqsliqrllse 66 
                 ++ +++r  ++k ++ +  a +fY++l ++  s+
  KKY20087.1 333 EYVARQRAAEQKDNEGFLAAYRFYEQLNLKTFSN 366
                 5666777777888888888999999986665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 3197.70
//
Query:       KKY20088.1  [L=381]
Description: hypothetical protein UCRPC4_g04220 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-55  187.5   0.0    3.8e-55  186.7   0.0    1.4  1  DUF2431   Domain of unknown function (DUF2431)


Domain annotation for each model (and alignments):
>> DUF2431  Domain of unknown function (DUF2431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.7   0.0   2.1e-59   3.8e-55       1     168 []      59     319 ..      59     319 .. 0.97

  Alignments for each domain:
  == domain 1  score: 186.7 bits;  conditional E-value: 2.1e-59
     DUF2431   1 LlvGegdfSFarslveqhkcenlvaTsydseeellekypqaeenieeLeee................................................ 51 
                 Ll+GegdfSFa sl++ h+c++++aTsyd++++l +kyp +  +++ L+++                                                
  KKY20088.1  59 LLLGEGDFSFASSLLKAHRCRKITATSYDDYDTLVSKYPGITRTLDLLNARhsaggpagctlrdgylsedndegtpdedewngfsseasddaddpretg 157
                 89************************************************************************************************* PP

     DUF2431  52 ..........gvkvlfgVDatkleksklqeklkkek.fdriifnFPhvggkstdvnrqvranqeLlvsffksakellsekp.................. 121
                           +v +++ +Da+k ++   +++l++++ fd+i+fnFPh+gg ++dvnrqvr nqeLlv+ffks+k lls+                    
  KKY20088.1 158 hvaksvdtksTVLLAHAIDARKAGS---SKELRSRGpFDKIVFNFPHAGGVTKDVNRQVRLNQELLVGFFKSCKGLLSRPGcpsqqlrrqgdnerydte 253
                 ******9999999999*******94...345666666*****************************************9999***************** PP

     DUF2431 122 ...................geilvtlfegepytlwnikdlareaglkvvrsfkFdaeaypgYkhar 168
                                    g+i++++fegepy+lwn++dlar++g+kv++sf+F++eayp Ykhar
  KKY20088.1 254 dededgdcddyninspperGQIILSVFEGEPYSLWNVRDLARHSGYKVIESFRFPWEAYPSYKHAR 319
                 ****************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2831.26
//
Query:       KKY20089.1  [L=304]
Description: putative methyltransferase-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 1854.83
//
Query:       KKY20090.1  [L=893]
Description: putative leucine rich repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.029   14.4   8.6         34    4.8   0.0    6.3  6  LRR_6     Leucine Rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0019        34       3      16 ..     395     408 ..     393     409 .. 0.90
   2 ?    2.3   0.0     0.013   2.3e+02       2      19 ..     508     525 ..     507     529 .. 0.84
   3 ?    1.0   0.0     0.033   5.8e+02       1      11 [.     594     604 ..     594     606 .. 0.91
   4 ?    4.3   0.0    0.0028        50       2      12 ..     627     637 ..     626     637 .. 0.91
   5 ?    0.0   0.1     0.068   1.2e+03       1      20 [.     660     679 ..     660     683 .. 0.75
   6 ?   -1.0   0.3      0.14   2.5e+03       1      16 [.     688     703 ..     688     704 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0019
       LRR_6   3 thLteLdLsgNdIg 16 
                 +hL++L++s ++++
  KKY20090.1 395 CHLRALEVSNCGLS 408
                 8**********985 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.013
       LRR_6   2 nthLteLdLsgNdIgDeG 19 
                 + +L+eL++  ++++++ 
  KKY20090.1 508 SETLRELHMDQCGLTGQD 525
                 569***********9875 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.033
       LRR_6   1 snthLteLdLs 11 
                 +nt L +Ld+s
  KKY20090.1 594 KNTMLVSLDIS 604
                 69********9 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.0028
       LRR_6   2 nthLteLdLsg 12 
                 n++L+eLd+sg
  KKY20090.1 627 NMTLQELDISG 637
                 9********96 PP

  == domain 5  score: 0.0 bits;  conditional E-value: 0.068
       LRR_6   1 snthLteLdLsgNdIgDeGa 20 
                 sn++Lt L + + ++g +Ga
  KKY20090.1 660 SNSSLTILRIEYQNLGLQGA 679
                 69******997766666665 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 0.14
       LRR_6   1 snthLteLdLsgNdIg 16 
                 +n +L+e++ + NdI+
  KKY20090.1 688 HNVTLREVHCANNDIT 703
                 799*****99999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (893 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 5441.98
//
Query:       KKY20091.1  [L=637]
Description: putative 75k gamma secalin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-78  263.7   6.1    3.2e-78  263.7   6.1    1.4  2  Cohesin_load  Cohesin loading factor
  ------ inclusion threshold ------
       0.15   12.8   0.3       0.74   10.6   0.0    2.2  2  DUF4373       Domain of unknown function (DUF4373)


Domain annotation for each model (and alignments):
>> Cohesin_load  Cohesin loading factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -12.0   8.3         2   1.8e+04     578     596 ..      24      42 ..      23      43 .. 0.59
   2 !  263.7   6.1   3.5e-82   3.2e-78       3     334 ..     265     615 ..     263     625 .. 0.96

  Alignments for each domain:
  == domain 1  score: -12.0 bits;  conditional E-value: 2
  Cohesin_load 578 qlgerakaeqteesldals 596
                   q++++++ +q+++++++++
    KKY20091.1  24 QQQQQQQQQQQQQQHQQYQ 42 
                   4556666666666666665 PP

  == domain 2  score: 263.7 bits;  conditional E-value: 3.5e-82
  Cohesin_load   3 vvelLlslaeeyltaAhevvskv..kseeeleqYykLiatGikCLeavlkdfklpprqearvtlrLariLleETenideAeeylskailiaeknrli 97 
                   +   Lls+a+eyl+aA++++++   +++e +e+Y +L+ ++++C+e vl++++l+p +ear++l+Lar+L+eETen  eAe++l+++i +a++++l+
    KKY20091.1 265 YELVLLSMADEYLNAAYDLAAEAaeEDDEVVETYDRLVLAALTCMEKVLQEWRLQPLLEARLRLQLARVLIEETENHYEAETILTQGIELAREHHLW 361
                   5678*******************98888999****************************************************************** PP

  Cohesin_load  98 dlkfvcqfLlarllektnpkaAlksldeliedaetyqhnewvylfrllriqlslqt..dkdnsaalenlqslaelanrkgdkklfvvlslleallhl 192
                    l++ +q Ll rl+ + npk+A k ++++i+d+e+y+h++wvy+fr+lri+ s  +  +++  a ++nlq++++la+r gd ++ v ++ +eal+hl
    KKY20091.1 362 SLQYTMQTLLLRLQHSLNPKVAIKEINRIIDDVEAYKHTQWVYVFRFLRISISSPSpsNAELLASIQNLQKVQSLAQRYGDHAVLVWAAAMEALMHL 458
                   *****************************************************9999999************************************* PP

  Cohesin_load 193 rrgspkdvlevlqeiiaaarslqldeeseqipqlkalllllellvslqkddvknvkekLkalqsfldelkdkkswsswsedgsiklkiters..... 284
                   r   ++++l ++q++ a ar++ql+e+ + +pq+++l++l++l++sl++ +  ++++k+  +q+ +d+  d++ ws    dg ik+ + +rs     
    KKY20091.1 459 RGY-SSESLDQAQRALAVARQMQLNEQLTISPQIQILVQLIDLCCSLHESNLPQIQKKMHVMQQIMDTVVDDPAWSK---DGAIKIPLSKRSlsgiv 551
                   876.********************************************************************85555...999999999999***** PP

  Cohesin_load 285 ...........gl.klifswLpkkdllaLlYllsglvnlykkktd..ksekflqkalrqleklk 334
                              g  +++++wL+kkd + + Ylls++   +k+  d  k+ekf++++l++l++ +
    KKY20091.1 552 slsqelvgeknGHpTIVITWLTKKDVYCVGYLLSSIGVSHKNAVDgrKAEKFIEEGLELLSSKN 615
                   ***********888************************99999999***********9998755 PP

>> DUF4373  Domain of unknown function (DUF4373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.36   3.3e+03      26      73 ..     345     393 ..     335     402 .. 0.62
   2 ?   10.6   0.0   8.3e-05      0.74      11      54 ..     430     473 ..     423     528 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.36
     DUF4373  26 ygvyvkllekiykekgyyiewdeeqlllladka.klevdeeevkeivea 73 
                  +++ + +e  ++++   ++++ ++lll ++   + +v  +e+++i+++
  KKY20091.1 345 ETILTQGIELAREHHLWSLQYTMQTLLLRLQHSlNPKVAIKEINRIIDD 393
                 5555555555555555555555555554444335888899999999994 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 8.3e-05
     DUF4373  11 dekierleaeyglkGygvyvkllekiykekgyyiewdeeqllll 54 
                  +k++ l ++yg+ ++ v+ + +e++ +  gy  e  ++ + +l
  KKY20091.1 430 LQKVQSLAQRYGDHAVLVWAAAMEALMHLRGYSSESLDQAQRAL 473
                 589*****************************665433333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2221  (0.123878); expected 358.6 (0.02)
Passed bias filter:                      748  (0.0417201); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.95u 0.39s 00:00:01.34 Elapsed: 00:00:00.55
# Mc/sec: 3514.54
//
Query:       KKY20092.1  [L=326]
Description: hypothetical protein UCRPC4_g04224 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-06   27.7   9.7    7.2e-06   26.0   9.7    2.1  1  Cut12     Spindle pole body formation-associated protein
    0.00054   19.0   3.4    0.00075   18.5   3.4    1.1  1  DUF812    Protein of unknown function (DUF812)
    0.00068   19.7   4.8    0.00068   19.7   4.8    2.6  2  bZIP_1    bZIP transcription factor
  ------ inclusion threshold ------
       0.04   14.2   3.8       0.14   12.4   3.8    2.0  1  HALZ      Homeobox associated leucine zipper


Domain annotation for each model (and alignments):
>> Cut12  Spindle pole body formation-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   9.7   1.6e-09   7.2e-06      72     133 ..     133     194 ..      14     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.6e-09
       Cut12  72 eFesyrsdaelEieklikyrslaksyakkKdeealrlkeklke.Eeekvaemekkvselaskv 133
                 +  syr+++++ ++kl++   l+ksya++Kdeea++++ ++k+ E e  ++  k++++l  +v
  KKY20092.1 133 KSHSYRTHSDRQLRKLLRRYDLVKSYARMKDEEANEMSLRVKQlE-EENRNLLKELQQLKDSV 194
                 5579**************************************954.44455555555555555 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   3.4   1.7e-07   0.00075     246     385 ..      23     198 ..       5     208 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.7e-07
      DUF812 246 keklqkrlaeqlrkaalkseeae.ssasksksdlaellsefseksetdslktkgsrfthaekl.qftke.............................. 312
                 + k ++ la++ + aa   e+++ + +s+s+s+l+++  ++s + ++     + s+++h ++  + tke                              
  KKY20092.1  23 QLKKEEGLAQRRSDAAAGVESQSsPLRSTSRSPLKDIETQVSPSPKQ-----RTSKLRHVQSPaSTTKEhprsrtsreatraqapcsplpsrvrdktsv 116
                 22333333333333333333333477888899999999999444444.....34555555554222333566666677888888999999999999999 PP

      DUF812 313 .........elakkaeteeelkkkreeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkk 385
                          e++ ++++    +++ +++l++l ++++ ++s +   +ee ++++ ++kq+eee +++ +e ++l+++v+lk 
  KKY20092.1 117 lppppttstEPTITSSKSHSYRTHSDRQLRKLLRRYDLVKSYARMKDEEANEMSLRVKQLEEENRNLLKELQQLKDSVALKS 198
                 988887665444888999999*********************************************************9996 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   4.8   1.5e-07   0.00068      24      61 ..     162     198 ..     156     200 .. 0.92
   2 ?   -1.8   2.5      0.75   3.3e+03      14      27 ..     302     315 ..     301     318 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.5e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  24 KqaeieeLerrvkaLekeNksLkseleelkkevekLks 61 
                 K +e +e + rvk+Le+eN +L +el++lk+ v+ Lks
  KKY20092.1 162 KDEEANEMSLRVKQLEEENRNLLKELQQLKDSVA-LKS 198
                 899*****************************99.775 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.75
                 HHHHHHHHHHHHHH CS
      bZIP_1  14 ReaArrsRqRKqae 27 
                 R aA+r R++ +ae
  KKY20092.1 302 RLAAARARLKLKAE 315
                 89*******98876 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   3.8   3.1e-05      0.14      18      40 ..     170     192 ..     167     195 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.1e-05
        HALZ  18 ksdydsLkkenekLkaelqeLke 40 
                  +++ +L++en++L++elq+Lk+
  KKY20092.1 170 SLRVKQLEEENRNLLKELQQLKD 192
                 567889***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1727  (0.0963244); expected 358.6 (0.02)
Passed bias filter:                      695  (0.038764); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 2133.19
//
Query:       KKY20093.1  [L=421]
Description: putative cell cycle control protein cdc123 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.8e-110  366.5   0.0   1.5e-109  365.9   0.0    1.3  1  D123      D123


Domain annotation for each model (and alignments):
>> D123  D123
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  365.9   0.0  8.3e-114  1.5e-109       1     306 []      34     381 ..      34     381 .. 0.91

  Alignments for each domain:
  == domain 1  score: 365.9 bits;  conditional E-value: 8.3e-114
                 HHHHHGGGS--EEEES--HHHHHHHCSSSEE-----...............--------------------...HHHHHHHHHHHHHTTS-EEEE-SS- CS
        D123   1 WypkfrkltikskiiplpeefleYLeedgivlpeeseeekesaeesesdsdseesdsedeeeeeeeeeepseefpeleekikeaieelggavfpKlnws 99 
                 Wypk r++t+k+++i l++ fl+YL++dgivlp e+++ +     s++ds    s  ++e ++e+e+e+pse++p+++++ik++i+elgg+v+pKlnws
  KKY20093.1  34 WYPKLRAHTPKARLIALSAPFLDYLRSDGIVLPPETQRVT-----SDDDSG-IFSTASSEADDEDEDEDPSEAWPDIHHSIKSTISELGGRVVPKLNWS 126
                 ************************************8864.....222222.22222222222223334789*************************** PP

                 --GGGCCTSSSSSS-BSSHHHHHHHHHT-HHHHHHHHHTTTTBT--TTS-S-TT----EEEEE-----GGGEEEEEEETTEEEEEEESSSS--THHHHT CS
        D123 100 aPkDAawilaenslkctsvndvylLLksSdfiahDLehafdeceeeeeesekeeieleLvLrkwfdlnpslefRcFVkdrkLiaisqRdlnyydfleel 198
                 aPkDA+w++a+n + c+s+nd+ylLLksSdf++hDLehafd+c    e+ +  +i+++L+Lrk f+lnp+lefRc V+dr+L+a++qRd n++dfl  +
  KKY20093.1 127 APKDATWMSATNDMDCRSANDIYLLLKSSDFVTHDLEHAFDDC---VEDGSAPQIPYHLILRKSFNLNPALEFRCCVRDRRLLAVCQRDQNHFDFLFPM 222
                 *******************************************...67778889********************************************* PP

                 HHHHHHHHHHHHHT..TTTSS..SSSEEEEEEEETT..EEEEEEEEESSTTS--TTS-HHHHH.................................... CS
        D123 199 keelkekieeffeeklkekfp..desyvfDvyvpkkldkvkliDinpfaertdslLFtweeLl.................................... 259
                 k++l ++ie+f+++ l + f   + ++vfDvy+p ++d+v+liDinp+a+rtd+lLF+w eLl                                    
  KKY20093.1 223 KDDLLDEIEDFLQDILLPAFGreEPNFVFDVYIPPPHDRVWLIDINPWAQRTDPLLFSWLELLtmpsppspssqfditiripmstcntppsqssapdsg 321
                 *******************983356************************************************************************** PP

                 ..................HS-TTSSS-EEE----XXXX...XXXXXXXXXXXXXXXXXXXX CS
        D123 260 .............eeeeeeeeeeeeepelrlvesekdvea.nfaskeysankvPkdvvdas 306
                              ++  ++ee+  ++p +rl+ +++d+ea +fas++ysa+k+Pkdvvdas
  KKY20093.1 322 ssrppasspttnnDDGGNDEEDIISTPIFRLI-NRDDPEAyQFASTKYSAHKLPKDVVDAS 381
                 *********98776667778888899******.89999999******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2894.23
//
Query:       KKY20094.1  [L=380]
Description: hypothetical protein UCRPC4_g04228 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0066   16.7   8.1     0.0066   16.7   8.1    1.9  2  RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc3
  ------ inclusion threshold ------
       0.42   10.7   5.3       0.11   12.5   1.9    1.8  2  RNA_polI_A34     DNA-directed RNA polymerase I subunit RPA34.
       0.81    8.9  10.5        1.6    8.0  10.5    1.5  1  NOA36            NOA36 protein
        1.6    7.8  16.4      0.096   11.8  10.9    1.7  2  DUF2457          Protein of unknown function (DUF2457)
          4    7.1  17.5       0.08   12.7   9.4    2.0  2  Cwf_Cwc_15       Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   2.5       4.6   1.7e+04     166     166 ..     156     156 ..      81     224 .. 0.57
   2 !   16.7   8.1   1.8e-06    0.0066     177     214 ..     329     375 ..     247     376 .. 0.67

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 4.6
  RNA_pol_3_Rpc31 166 e 166
                      +
       KKY20094.1 156 S 156
                      1 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.8e-06
  RNA_pol_3_Rpc31 177 laeeeddee..........ekkekedeeeeeeeeeddefddddedggD 214
                       + +edd++            +e+ +++ee eeeedd+ dddde+++D
       KKY20094.1 329 SESDEDDDSikpprlpglpTLEEASEDDEE-EEEEDDDDDDDDEQNDD 375
                      12333343489999**97433333333333.46667776766665666 PP

>> RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.4   5.1e+03      61      92 ..     177     221 ..     147     228 .. 0.63
   2 ?   12.5   1.9   3.1e-05      0.11     110     165 ..     308     363 ..     254     375 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.4
                   EEE-SSST............B-TTSS.-B-SEEEEEEE--XXXXX CS
  RNA_polI_A34  61 Llpdkkkd............gyelaa.kpisrtlnisevvqlpst 92 
                   ++p k++             +++ ++ +pi+r+  + e +q+ ++
    KKY20094.1 177 VTPTKAGAaslataslldsaDSRMTDlPPIDRSDELAEYYQDEDE 221
                   444444444444444444445555666778877777777777665 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.1e-05
                   XXXXXXXXXXXXXXXXXXX............XXXXX......XXXXXXXXXXXXXXXXXXX. CS
  RNA_polI_A34 110 kgLkmRFkPfGsgdgppgtigssseesegekekkkk......pkakkkekkkkkkkaaeede 165
                     L +R+ P G++++  ++  s+s+e+++  + ++       +      ++ + ++++ee++
    KKY20094.1 308 SRLEHRYAPRGFKSEHNEDAMSESDEDDDSIKPPRLpglptlE------EASEDDEEEEEED 363
                   4699**********99999888888877777777776665542......3333333333332 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  10.5   0.00045       1.6     241     296 ..     320     374 ..     298     380 .] 0.44

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00045
       NOA36 241 adgsddddddeedsdydaylkalasgddeddegdedddddddeedddeeeddedee 296
                 ++++++d   e+d d d+ +     g  + +e++edd+++++e+ddd+++ de+++
  KKY20094.1 320 KSEHNEDAMSESDEDDDSIKPPRLPGLPTLEEASEDDEEEEEEDDDDDDD-DEQND 374
                 43444444344444444444433333344444444444433333333333.33222 PP

>> DUF2457  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2      0.59   2.1e+03     143     199 ..     139     197 ..     126     198 .. 0.53
   2 ?   11.8  10.9   2.7e-05     0.096      40      80 ..     317     375 ..     280     380 .] 0.60

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.59
     DUF2457 143 eqlatklerrlSv.eesSisslesakkseksrkkkar.elkskkskirpetpeLPDSTD 199
                 +++ ++ +r +Sv +++S +++ ++ ++++  k+++   + +k+     +t +L DS D
  KKY20094.1 139 HTKDVEENRNESVsQNTSADAVLKSLTTMNIGKHTTAlVTPTKAGAASLATASLLDSAD 197
                 44455556666665566666655544444443333330333334446777777777776 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.7e-05
     DUF2457  40 rkLgeeaeeEaeeeeeee...................eddeedeeddddddddedddedd 80 
                 r + +e +e+a +e +e+                   eddee+ee+ dddddd+d+++dd
  KKY20094.1 317 RGFKSEHNEDAMSESDEDddsikpprlpglptleeasEDDEEEEEE-DDDDDDDDEQNDD 375
                 5566777788877766656678888888888765442222222222.2222222222222 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   1.0      0.36   1.3e+03      56     120 ..     103     152 ..      78     225 .. 0.46
   2 ?   12.7   9.4   2.2e-05      0.08     110     146 ..     322     372 ..     262     375 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.36
                 HHHHHHHHHHHHHHH-----------.......--------------------------..----------- CS
  Cwf_Cwc_15  56 aeLeeaeaeakakkrkkaeleaeeee.......ekekkeeeeeeeeeeakrrkeelleeareidaddedsee 120
                 + Le+ e++  ++++++ ++e  + +       +                     +l++ ++++++ ++s +
  KKY20094.1 103 KYLESIEKRIPSNHKSRISKELGKYAlvrrsqlR---------------------VLHT-KDVEENRNESVS 152
                 3444444433333333222222221122222220.....................2211.122222222211 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.2e-05
                 -----------------................-------------------- CS
  Cwf_Cwc_15 110 eidaddedseeeeeeee................eesdddsdsdsdddddedet 146
                 e ++d  ++++  e+++                +e+d+++++++ddddd+de+
  KKY20094.1 322 EHNEDAMSESD--EDDDsikpprlpglptleeaSEDDEEEEEEDDDDDDDDEQ 372
                 22333322222..22223567899999*9997444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       976  (0.0544369); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 2388.94
//
Query:       KKY20095.1  [L=332]
Description: hypothetical protein UCRPC4_g04229 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.50
# Mc/sec: 2006.27
//
Query:       KKY20096.1  [L=2284]
Description: putative polyketide synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-65  220.9   0.0    3.9e-65  219.1   0.0    2.0  1  KR               KR domain
    6.7e-65  219.2   0.0    9.2e-64  215.4   0.0    2.7  3  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    2.2e-59  201.6   0.0    3.7e-59  200.8   0.0    1.3  1  Acyl_transf_1    Acyl transferase domain
      5e-47  160.6   0.0    7.3e-47  160.0   0.0    1.2  1  PS-DH            Polyketide synthase dehydratase
    1.3e-36  125.2   0.0      4e-36  123.6   0.0    1.9  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    8.1e-18   65.8   0.0      3e-17   63.9   0.0    2.0  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
    6.1e-17   61.7   0.4    5.8e-16   58.5   0.0    2.4  2  adh_short        short chain dehydrogenase
    7.4e-17   61.8   0.0    3.3e-16   59.7   0.0    2.0  1  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
      7e-14   51.9   0.0    3.7e-13   49.6   0.0    2.3  2  ADH_zinc_N       Zinc-binding dehydrogenase
    4.4e-11   42.8   0.0    3.6e-10   39.8   0.0    2.5  3  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    5.5e-10   39.5   0.2    1.6e-09   38.0   0.2    1.9  1  PP-binding       Phosphopantetheine attachment site
    2.2e-07   30.7   0.2    5.5e-07   29.4   0.2    1.7  1  ADH_N            Alcohol dehydrogenase GroES-like domain
     0.0014   18.5   0.9     0.0087   15.9   0.9    2.3  1  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
     0.0028   17.2   0.0       0.05   13.1   0.0    2.3  2  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.019   14.3   0.0      0.033   13.6   0.0    1.3  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
      0.022   14.5   0.2        0.3   10.8   0.2    2.2  1  SAT              Starter unit:ACP transacylase in aflatoxin b
      0.036   13.2   0.0       0.09   11.9   0.0    1.6  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.058   12.7   0.0       0.16   11.3   0.0    1.7  1  Thiolase_N       Thiolase, N-terminal domain
       0.12   11.5   0.1       0.68    9.1   0.0    2.3  3  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
       0.18   11.9   0.0       0.64   10.1   0.0    2.0  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
       0.19   11.9   0.1       0.48   10.6   0.1    1.6  1  PTSIIB_sorb      PTS system sorbose subfamily IIB component


Domain annotation for each model (and alignments):
>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.1   0.0   4.6e-68   3.9e-65       1     179 [.    1912    2090 ..    1912    2091 .. 0.99

  Alignments for each domain:
  == domain 1  score: 219.1 bits;  conditional E-value: 4.6e-68
                  SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------T CS
          KR    1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkll 97  
                  ++y+++GG+GgLG+++a+w+ +kgar++vl+sRsa+++++ kal++el+ +g+++ v  +Dvs++++ve+l++e  +++pp++Gvih A+vl+d l+
  KKY20096.1 1912 ASYILIGGTGGLGRSMAKWMSSKGARNIVLVSRSASVNDKVKALMDELAPSGTNIVVKTCDVSNPESVEKLVKEDMKDMPPVRGVIHGAMVLKDMLF 2008
                  68*********************************************************************************************** PP

                  TT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   98 eemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  e+mt ed+ +v+ +Kv+GawnLh++l++++ldff+++SS+ag++g++gqa+Y+aaN flD+++++rrsqglp++si++++++
  KKY20096.1 2009 ENMTHEDFISVTTSKVDGAWNLHNTLSSSPLDFFITLSSVAGVIGNRGQAAYSAANVFLDGFMSWRRSQGLPGTSIDLTAVS 2090
                  ******************************************************************************9886 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.4   0.0   1.1e-66   9.2e-64       3     253 .]      99     349 ..      97     349 .. 0.93
   2 ?   -1.2   0.0       1.4   1.2e+03     131     166 ..     557     592 ..     542     606 .. 0.72
   3 ?   -0.9   0.0       1.2     1e+03      72     138 ..     680     754 ..     649     772 .. 0.60

  Alignments for each domain:
  == domain 1  score: 215.4 bits;  conditional E-value: 1.1e-66
                    -EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..S..TTEGGTTSTHHHHHHHCTS-HHHHHHHHH CS
  ketoacyl-synt   3 pvaivGmgarfPggnd.veefwelLlegrdaiselpadrwdadklydpparaagkiktklggfld..vddfdpeffgispreaeamdpqqrlllea 95 
                    p+a++G ++r++g ++ ++++wel  + r++ s++p+dr++ d++++p++   g  +   g+fl+    +fd+ ff+ +++ea +mdpqqrllle+
     KKY20096.1  99 PIAVIGYSCRLSGDVTtPDDLWELCTRARSGWSKIPSDRFSFDAFHHPNPSKMGAFNPTGGYFLQedLGRFDAPFFNLTAQEAISMDPQQRLLLEC 194
                    9*************999*****************************777777777777799***99999*************************** PP

                    HHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHHT CS
  ketoacyl-synt  96 awealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslrs 191
                    + ea+e+ag+++e l g+++gvf+G + +dy+  ++ d +      +  a+g+ +++  ++risy ++lrGps+tvdtACs slva+h+avqslrs
     KKY20096.1 195 SFEAFESAGIPKEFLAGRKMGVFVGGNFADYELNNVRDVE--TIPMYQ-ATGC-APALQSNRISYYFDLRGPSFTVDTACSGSLVALHQAVQSLRS 286
                    *******************************543333322..355666.8898.****************************************** PP

                    TS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB.-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 192 geadvalaGGvellltpeavagfsaagllspdgrckafdpka.dGfvlGEGvGavvLkrleda 253
                    ge+  al+ G +l + p  ++++s+ +l+++ g++ afd++a +Gf +GEG+G+v+Lk+l+ a
     KKY20096.1 287 GESTEALVAGCKLNILPDLFVSMSMSQLFNDAGKTFAFDERAtSGFARGEGAGCVILKPLDAA 349
                    ***********************************************************9765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.4
                    HHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--S CS
  ketoacyl-synt 131 aldedgsevkaspkavgavlanviagrisyalglrG 166
                    +l+ + ++  +++++ + +   +++g+++++lg + 
     KKY20096.1 557 SLQTRMKDLGVYFEQRPEAFEKMLCGNVAHTLGSKR 592
                    333333357788866677899***********9875 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.2
                    TTSTHHHHHHHCTS-HHHHHHHHHHHHHHHHHTS-HHTCTTGGEEEEEEESST....HHHHHHHHHHHTT....G CS
  ketoacyl-synt  72 peffgispreaeamdpqqrllleaawealedagltpeeldgsrvgvfiGvgag....dyaalaaldedgs....e 138
                    + +     + a+   p++  + +a  + le+ g+ p+++ g + g + ++ a+     y+a+a+ +++g+     
     KKY20096.1 680 KDAKTSRVNSADISQPACTAVQVALTNLLESWGIRPTAVVGHSSGEISAAYASgvynMYDAMALAYHRGQmtlrL 754
                    444444445555556677777788899*********999777744443333332224667777777666655533 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.8   0.0   4.4e-62   3.7e-59       2     309 ..     631     952 ..     630     961 .. 0.88

  Alignments for each domain:
  == domain 1  score: 200.8 bits;  conditional E-value: 4.4e-62
                    EEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHH.HT--HHHHH.HS--TTGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHHH CS
  Acyl_transf_1   2 fvfsGqGsQwaGMGmeLlktskafaaviaradeafksq.ygfsvldvl.rnnpeglldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGEl 95 
                    fvf+GqG+Qwa MG++L+++ ++fa ++++ad+++k+  + fs+ + l +++ ++ +++ + +qpa +avq+al++ll+s G rp avvGHS GE+
     KKY20096.1 631 FVFTGQGAQWAQMGTQLINEYPIFASTLEKADKHLKNLgASFSLVEELqKDAKTSRVNSADISQPACTAVQVALTNLLESWGIRPTAVVGHSSGEI 726
                    9***********************************93245776665515567899**************************************** PP

                    HHHHHCCSSSHHHHHHHHHHHHHHHHHHT.....S-EECCEECS...HHHHHHH....TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCE CS
  Acyl_transf_1  96 Aaavvagalsseeallavvlrsrlmmqla.....gpgdmaavel..aeeeeklr..cqddvvgavansprrvvisgsqealrelvervskegvgal 182
                    +aa++ g     +a+  ++ r++++ +l+     ++g m+av+   +++ + l+   +   + a++nsp++v++sg   a+ el + +++++++ +
     KKY20096.1 727 SAAYASGVYNMYDAMALAYHRGQMTLRLKerfptLKGTMLAVGAgpDTVSPYLKtlKDGYATIACVNSPSSVTVSGDVPAILELQKVLEEKQLFNR 822
                    ************************999853322368********9977777777524445789********************************* PP

                    EECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEH.CCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTS..SSECC-CCEECSSSSCCHCCC CS
  Acyl_transf_1 183 venvnvavhspqvdaiadalasaladiaprkpkvakiss.tsldesserelsaeywvanlrspvrfaeavlsa..aetiplvfveispHslllaal 275
                    +  v++a hs  ++++a++ ++++ +i prk+  a   s +  + +++ el+a ywvanl spv+f + + ++   e  p + ve+ pH+ l   +
     KKY20096.1 823 KLMVDMAYHSDHMKRVAEEYLATIDSIKPRKSSTATFYStVFGRVAETYELDASYWVANLTSPVVFPDGLSKLcsSEARPSILVELGPHPALKGPI 918
                    ****************************999876655550555556999***********************999999****************** PP

                    CCCCHH.GGG-TCCCCCCTEETTSS-HHHCHHHHH CS
  Acyl_transf_1 276 ektlks.aedvksatlvGklkrdltdflvtflyll 309
                    ++tlk   + +++ + v+++ r+ ++ ++  l  +
     KKY20096.1 919 KDTLKTlGSAASKIAYVPTIARNADA-VESILDTA 952
                    *****977889999**********99.55554444 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0   0.0   8.6e-50   7.3e-47       3     258 ..    1014    1290 ..    1012    1332 .. 0.81

  Alignments for each domain:
  == domain 1  score: 160.0 bits;  conditional E-value: 8.6e-50
                  TB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.....-EEEEEEEE----.B--SS-EEEEEEEEE-TTS CS
       PS-DH    3 llGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltges....kavelrdvsilkalvlpedepvevqlslepeedg 95  
                  +lG     ++d e+++rn +rl++lpwLr H+++g +v+P agy+ ma+eAa+q ++      + ++lr+v++ +alvl+++  +e ++sl+p ++g
  KKY20096.1 1014 VLGVLANYSNDLEPTWRNIVRLDDLPWLRHHAMQGMTVFPLAGYIVMAIEAAQQRAQFRgvnfSKFVLREVVVGSALVLNDGIDTETTFSLRPYTEG 1110
                  5776777789**********************************************66677789****************999***********999 PP

                  -E.......EEEEEEE-SS-TT.EEEEEEEEEE-----...........--B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEE CS
       PS-DH   96 ad...rawvefeifSregggeewtehatGtvrlaegaa...........aaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglral 178 
                  +    ++w ef+i+S++++ + w eh++G v ++ +++            ++    +l +++ e +s+++++s++ Y+ l+++g+ yGp+Fqgl++ 
  KKY20096.1 1111 TRgysDHWDEFRICSWNSKRG-WSEHCRGLVGVRGTQEdrgasisrlaeCETNHFRSL-KARIEASSQQNIDSKRMYDNLQQIGVGYGPTFQGLENC 1205
                  98*****************98.**********99888878888877544333344444.35566667899*************************** PP

                  EEETTEEEEEE---..GGGSSTTTT....-SB-HHHHHHHHHHG..GG----------EEEEEEEEEEE-S......-BTS--EEEEEE CS
       PS-DH  179 wrgdgealaelrlp..eelaggesa....yvlhPallDaalQllaaalsaeaekadaaylPvaierlrvyr...pssaageelwvharl 258 
                   ++   +++ + ++   +l ++       ++ hPa lD  l++l   l+a +++ d++y+P+ +++ +++r   +  +age+l  + + 
  KKY20096.1 1206 LSDSHHCFGDILVTdtKALVPK--TfehsLIAHPAFLDIFLHTLWPILGAGRNDLDTLYMPTMLKHATINRvlvN--QAGEQLKGYCTG 1290
                  **9999**99999965333333..23465777**********998988999*******************99632..456666655555 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.6   0.0   4.6e-39     4e-36       2     117 ..     358     474 ..     357     475 .. 0.98

  Alignments for each domain:
  == domain 1  score: 123.6 bits;  conditional E-value: 4.6e-39
                      EEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   2 avikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHleaAa 94 
                      avi++++v++dg+++++t+p+g+aq+++i++++++ag+dp+d +  e+hgtgt++gDpiE++a+++++g++++ ++pl++gSvKsn+GHle+A+
       KKY20096.1 358 AVIANTGVSQDGRTQGITQPSGDAQRDLIRDVYRNAGLDPADCGFAEMHGTGTKVGDPIEASAVHQALGSGRSpRNPLYIGSVKSNVGHLEGAS 451
                      9**********************************************************************99*99****************** PP

                      HHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptlnl 117
                      Gv+++ik+ ++l+++ + p+ n+
       KKY20096.1 452 GVISIIKASMMLEKELMLPNTNF 474
                      *********************98 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   3.5e-20     3e-17       7     133 .]    1753    1888 ..    1750    1888 .. 0.90

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 3.5e-20
                    EETT.STTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--.S-EEE-CHHHCTTT-EEEE--GGG...-....-HHHHHH CS
  ADH_zinc_N_2    7 idyr.tedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsig.gpplsaallkpakkrkgrsvkyeflfsmkas...aqadilee 92  
                    i y  +++f+    ++t++eg+Dvvl++++g+ l +++++++++ Gr+++ig ++++++  l+ +k++ + ++  + l+++ ++     ++il +
    KKY20096.1 1753 IFYSrDTSFAasikRVTNNEGIDVVLNSLAGDVL-RETWDCMAPFGRFIEIGkADITKNSRLDMNKFEYNVTFASVDLTKVASYkpkLMKRILSD 1846
                    555559999999999*****************99.*******999*******7777888888888889999999999998888899999999*** PP

                    HHHHHHHHH----EEEE.EEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2   93 laalieeGklrpvvdrv.fpleeaaeAhrylesgrarGKiVl 133 
                    ++ l+++ +++pv   + f ++e+  A+r+l+sg+ +GK+V+
    KKY20096.1 1847 ICGLMDKRTIKPVTPITtFRISEVEAAFRQLQSGKSIGKLVV 1888
                    *************99555***********************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.47     4e+02       3      66 ..    1705    1767 ..    1703    1780 .. 0.75
   2 !   58.5   0.0   6.8e-19   5.8e-16       4     163 ..    1915    2074 ..    1913    2100 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.47
                  EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHH CS
   adh_short    3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevea 66  
                  vl+  +++G+G+a  +    +Ga+++ +  s+ek   ++ke +   ++ ++++ D + ++++++
  KKY20096.1 1705 VLIHAGAGGVGQAAINLAKMAGAEIYTTVGSQEKKSFLMKEYNI-PEERIFYSRDTSFAASIKR 1767
                  89999********99999999*****976666776677777664.4555666666666666655 PP

  == domain 2  score: 58.5 bits;  conditional E-value: 6.8e-19
                  EEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT...TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGC CS
   adh_short    4 lvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee...gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfsel 96  
                  + +G+++G+Gr +ak + ++Ga+ +v v+rs++   +v++ + e+   g+++++ ++Dv++ e+ve+lv++ +k++ ++  ++++A + ++  f+++
  KKY20096.1 1915 ILIGGTGGLGRSMAKWMSSKGARNIVlVSRSASVNDKVKALMDELapsGTNIVVKTCDVSNPESVEKLVKEDMKDMPPVRGVIHGAMVLKDMLFENM 2011
                  678********************9998888865544444444444555999********************************************** PP

                  SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHH CS
   adh_short   97 seeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrsl 163 
                  + e++ +v    + g+ +l  ++            ++ sSvag  ++ g+aaYsA+  +++g+++  
  KKY20096.1 2012 THEDFISVTTSKVDGAWNLHNTLSSS----PLDFFITLSSVAGVIGNRGQAAYSAANVFLDGFMSWR 2074
                  ********999999999999887766....55689****************************9755 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   3.8e-19   3.3e-16       2      87 ..     478     572 ..     478     599 .. 0.78

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 3.8e-19
  KAsynt_C_assoc   2 npeipaleegrlkVvteptpwpggi..vgvNsfGfGGsnvHviLksnk........kekrkeesk......eeslprLlvlsgrteeaveallek 80 
                     n +ip l+++++kV t+  pwp++   ++v+ +GfGG+n+H++L++++        k       +      ++++ +L+++s++++e++++ +++
      KKY20096.1 478 NANIP-LKDWNMKVLTSSRPWPRNKkyISVSNYGFGGTNAHAVLEKPPlaarmipeK-------PkdvgasDDPKRKLFIISANDKESLQTRMKD 564
                     789**.***************999888*********************865555433.......2344555799*******************99 PP

  KAsynt_C_assoc  81 leeh.lld 87 
                     l  + ++ 
      KKY20096.1 565 LGVYfEQR 572
                     98774333 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   4.4e-16   3.7e-13       1     101 [.    1713    1817 ..    1713    1845 .. 0.81
   2 ?   -2.1   0.0         4   3.4e+03       1      41 [.    1922    1970 ..    1922    1995 .. 0.68

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 4.4e-16
                  HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TT..ESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC..T CS
  ADH_zinc_N    1 gvGlaavqlAkalGaeviavdsseeklelakk.lG..adevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg..g 91  
                  gvG+aa+ lAk++Gae++++++s+ek  +++k +    ++++ + ++ ++ + ik+ t+ eg+dvv++ ++ g++l++  ++++p Gr+  +G    
  KKY20096.1 1713 GVGQAAINLAKMAGAEIYTTVGSQEKKSFLMKeYNipEERIFYS-RDtSFAASIKRVTNNEGIDVVLNSLA-GDVLRETWDCMAPFGRFIEIGKadI 1807
                  9******************9888888887777687635666666.555***********************.*********************9776 PP

                  SSEEEEEHHH CS
  ADH_zinc_N   92 kgeeefdlrn 101 
                  ++++ +d+++
  KKY20096.1 1808 TKNSRLDMNK 1817
                  6666687776 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4
                  HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHT.......TESEEEET CS
  ADH_zinc_N    1 gvGlaavqlAkalGa.eviavdsseeklelakkl.......Gadeviny 41  
                  g+G    ++    Ga +++ v++s++  +++k l       G + v+ +
  KKY20096.1 1922 GLGRSMAKWMSSKGArNIVLVSRSASVNDKVKALmdelapsGTNIVVKT 1970
                  5666666777778998888899999988888877555555555555555 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.7     4e+03      62     109 ..     753     800 ..     749     805 .. 0.88
   2 ?   -1.8   0.0       2.1   1.8e+03       4      78 ..    1712    1782 ..    1710    1808 .. 0.74
   3 !   39.8   0.0   4.2e-13   3.6e-10       4     149 ..    1921    2068 ..    1918    2072 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.7
                   HHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHH CS
  adh_short_C2  62 evvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslfll 109
                   +++e+f +l + + ++g  p+  +p+l+t +++++++  vn  s + +
    KKY20096.1 753 RLKERFPTLKGTMLAVGAGPDTVSPYLKTLKDGYATIACVNSPSSVTV 800
                   68999****************99*************999999887765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.1
                    TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE--- CS
  adh_short_C2    4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnag 78  
                     g+G+a+  +++ +Gae+  t  ++e+k+ + +  +  ++++ +  D +  ++++++ ++     +++D+++n+ +
    KKY20096.1 1712 GGVGQAAINLAKMAGAEIYTTVGSQEKKSFLMKEYNIPEERIfYSRDTSFAASIKRVTNN-----EGIDVVLNSLA 1782
                    588889889999999999988888887655555554444444488888777777777665.....56677666655 PP

  == domain 3  score: 39.8 bits;  conditional E-value: 4.2e-13
                    TSHHHHHHHHHHHTT-E.EEEEESSGGHHHHHHHHHHHTT...SE.E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-H CS
  adh_short_C2    4 sgIGraiAkalaeeGae.vvltdlneeakkrveelaeelg...ae.v.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsr 92  
                     g+Gr +Ak + ++Ga+ +vl+ ++ + +++v++l +el    ++ v   cDV+++e+ve+lv+e ++++  + ++++ a + ++    f++++ 
    KKY20096.1 1921 GGLGRSMAKWMSSKGARnIVLVSRSASVNDKVKALMDELApsgTNiVvKTCDVSNPESVEKLVKEDMKDMPPVRGVIHGAMVLKD--MLFENMTH 2013
                    599*************8577777777779999999999875434453699******************************99999..******** PP

                    HHHHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHH CS
  adh_short_C2   93 eefdraldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaale 149 
                    e+f  +   ++ ++++l + +     +    ++lssv++ ++  +++ay+aa   l 
    KKY20096.1 2014 EDFISVTTSKVDGAWNLHNTLSSS--PLDFFITLSSVAGVIGNRGQAAYSAANVFLD 2068
                    ****************99887653..33789*******************9976665 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.2   1.8e-12   1.6e-09       3      67 .]    2206    2271 ..    2204    2271 .. 0.96

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 1.8e-12
  PP-binding    3 lrelvaevlgvpleeid.pdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  l++ +++vlg+p e++d p+ +++ lGlDSl+a+e+ +++ +e +  + + +l+ + +++ la+++
  KKY20096.1 2206 LLAKLSSVLGLPIEDLDnPSNSISGLGLDSLVAIEIRNWIARETEANVQVLELLSCGSIGGLAELI 2271
                  8899************88*********************************************987 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.2   6.5e-10   5.5e-07       2      69 ..    1596    1658 ..    1595    1669 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 6.5e-10
                  TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SS CS
       ADH_N    2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscge 69  
                  +ev i+vka+g++  D+ +  g    + ++p  +G E +G++++vg++v+++++G+rV++    + ++
  KKY20096.1 1596 DEVEIEVKATGMNFKDIVVSMG----QLAQP-YIGVECSGIISSVGKNVTDVHIGQRVMAMSEGAYST 1658
                  89***************99999....68888.68*************************976655554 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.9     1e-05    0.0087       2      35 ..     265     298 ..     264     356 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1e-05
                  EEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEE CS
  ACP_syn_III   2 DlnaaCsgfvyalsvAdaliesgaakrvLvigae 35 
                   + +aCsg ++al++A + ++sg+  ++Lv g +
   KKY20096.1 265 TVDTACSGSLVALHQAVQSLRSGESTEALVAGCK 298
                  5789**************************9975 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0       0.2   1.7e+02       6      71 ..    1710    1780 ..    1705    1792 .. 0.78
   2 !   13.1   0.0   5.9e-05      0.05       2     116 ..    1915    2048 ..    1914    2061 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.2
                  TTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC.....EEEE--TT-HHHHHHHHHHHT-SEEEE- CS
   Epimerase    6 atGfiGsalvkallekgye.vigldrlssasntarledl.....elveldltdrsalerlfkeeqpdavihl 71  
                  ++G +G+a ++  + +g e  +++ +++++s   ++         ++  d   +++++r+ ++e++d+v++ 
  KKY20096.1 1710 GAGGVGQAAINLAKMAGAEiYTTVGSQEKKSFLMKEY-NipeerIFYSRDTSFAASIKRVTNNEGIDVVLNS 1780
                  6899999999999999999566666664444444444.3599999************************997 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 5.9e-05
                  EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..........EEEE--TT-HHHHHHHHHHHT-SE.....EEE--S.---HHHHHH CS
   Epimerase    2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl..........elveldltdrsalerlfkeeqpda.....vihlAa.vggvaasse 82  
                  +++G+tG +G+ ++k + +kg + i+l ++s + n + ++             + ++d+ +++++e+l+ke + d+     vih A   ++   ++ 
  KKY20096.1 1915 ILIGGTGGLGRSMAKWMSSKGARNIVLVSRSASVNDKVKALMdelapsgtniVVKTCDVSNPESVEKLVKEDMKDMppvrgVIHGAMvLKDMLFENM 2011
                  578******************997777777777777766655899*****998999**************987664444449999999899888999 PP

                  SHHHHHH...HHTHHHHHHHHHHHHHTCTEEEEEEEG CS
   Epimerase   83 dpadfie...knlqgtlnlleaarkagvkrllflsSs 116 
                  + +dfi    + + g++nl + ++ + ++ ++ lsS+
  KKY20096.1 2012 THEDFISvttSKVDGAWNLHNTLSSSPLDFFITLSSV 2048
                  9999998555678899999999999999999999994 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.8e-05     0.033       3      73 ..    1917    1985 ..    1915    1990 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.8e-05
                     ETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHH CS
  GDP_Man_Dehyd    3 TGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllae 73  
                      G++G  G  +a+++ +kg + +++v rs+s+n +++++l+++  +   +n+ +  +D+++ +s+e+l++e
     KKY20096.1 1917 IGGTGGLGRSMAKWMSSKGARNIVLVSRSASVN-DKVKALMDEL-APSGTNIVVKTCDVSNPESVEKLVKE 1985
                     59*****************************99.8999998765.55688******************998 PP

>> SAT  Starter unit:ACP transacylase in aflatoxin biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00035       0.3      46     143 ..     663     754 ..     654     831 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00035
         SAT  46 aaerkslp...rftslqellerysesglkspalssallciaqlaqfivyleenpeeypspestylvGlCtGllaAaavacskslseLvplaveavrvaf 141
                 ++ +       +f+ ++el +  ++s  +s+ +s + ++ +q+a   + l e+   + +  +t +vG+++G ++Aa ++   ++ + ++la +  ++++
  KKY20096.1 663 KHLK---NlgaSFSLVEELQKDAKTSRVNSADISQPACTAVQVAL-TNLL-ESW--GIR--PTAVVGHSSGEISAAYASGVYNMYDAMALAYHRGQMTL 752
                 3333...233599*********99******************985.4444.222..333..589***************99999888888777777766 PP

         SAT 142 rl 143
                 rl
  KKY20096.1 753 RL 754
                 65 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00011      0.09       4      79 ..    1917    1989 ..    1915    2048 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
                       ETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-S CS
  Polysacc_synt_2    4 tGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvd 79  
                        G++G +G+++ + + +k +++i+l++r+    ++++  ++e + +  +  +iv+  +dv + e++ek+++e   d
       KKY20096.1 1917 IGGTGGLGRSMAKWMSSKGARNIVLVSRSASVNDKVKALMDELAPS-GT--NIVVKTCDVSNPESVEKLVKEDMKD 1989
                       599***************************9999999977544444.44..778899**********999865433 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00019      0.16      77     112 ..     262     297 ..     239     299 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
                 EEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEE CS
  Thiolase_N  77 pavtvnkvcsSglkavalaaqsiaageadvvvagGv 112
                 p+ tv+ +cs +l a+++a+qs+++ge+  +++ G+
  KKY20096.1 262 PSFTVDTACSGSLVALHQAVQSLRSGESTEALVAGC 297
                 789************************998888886 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.9   1.6e+03      27     112 ..     685     773 ..     661     825 .. 0.67
   2 ?    9.1   0.0   0.00079      0.68     152     190 ..    1623    1660 ..    1622    1666 .. 0.84
   3 ?   -3.3   0.0       4.6     4e+03      14      29 ..    1716    1732 ..    1706    1784 .. 0.46

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.9
                  EEEE....TTHCHHHCSHHHHCHHHHHHHHHHHHH.....HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEEESEEEE---EEE- CS
                  xxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  27 tlve....legtclnggcllskallgvaedaeias.....evvkklnqgielllgeevvkidpgkkkvklekkkegdeekiaydklvlAtGsspr 112
                    v+    ++ +c  +++ l++ l++++ ++  +      e    + +g+ ++++  ++++ + +++++l+  k   e+  + +  +lA G+ p 
   KKY20096.1 685 SRVNsadiSQPACTAVQVALTNLLESWGIRPTAVVghssgEISAAYASGVYNMYD--AMALAYHRGQMTLRL-K---ERFPTLKGTMLAVGAGPD 773
                  3333444688889999999999999999999877799999888889999998998..555555555555522.2...222344555666666554 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00079
                   HHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  152 yiGvElAaalaklgkevtlveardrllraldkelsaale 190 
                   yiGvE+++ ++++gk+vt v+ ++r++ a+ + +  +++
   KKY20096.1 1623 YIGVECSGIISSVGKNVTDVHIGQRVM-AMSEGAYSTYA 1660
                   9*************************9.66666655555 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 4.6
                   HHHHHHHH.HTS-EEEE CS
                   xxxxxxxx.xxxxxxxx RF
  Pyr_redox_2   14 aaaltlaq.agakvtlv 29  
                   +aa++la+ aga+++  
   KKY20096.1 1716 QAAINLAKmAGAEIYTT 1732
                   45556655555555543 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00074      0.64      14      56 ..    1914    1959 ..    1904    1977 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00074
                    EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSH...HHHHHHHHHH CS
  Shikimate_DH   14 kvlliGaGemaelvakhLlakgvkkvvvaNRtl...erakelaeel 56  
                     +l+ G+G +++ +ak +++kg++++v + R+    +++k+l +el
    KKY20096.1 1914 YILIGGTGGLGRSMAKWMSSKGARNIVLVSRSAsvnDKVKALMDEL 1959
                    567779*************************973336888888877 PP

>> PTSIIB_sorb  PTS system sorbose subfamily IIB component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00056      0.48      15      61 ..    1926    1972 ..    1924    1989 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00056
                   HHHHHHCCCTTSEEEEE-HHHHC-HHHHHHHHCCS-TTSEEEEE-HH CS
  PTSIIB_sorb   15 VataWtkelkanriivvdDevakdelqkellkmaapsgvkvsilsve 61  
                    + +W+++ +a++i++v+ +++ ++  k+l+   apsg+++ +++ +
   KKY20096.1 1926 SMAKWMSSKGARNIVLVSRSASVNDKVKALMDELAPSGTNIVVKTCD 1972
                   5789*************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 1.17u 0.35s 00:00:01.52 Elapsed: 00:00:00.54
# Mc/sec: 12639.42
//
Query:       KKY20097.1  [L=253]
Description: hypothetical protein UCRPC4_g04231 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-18   67.0   0.0    3.7e-18   66.0   0.0    1.5  1  FSH1      Serine hydrolase (FSH1)


Domain annotation for each model (and alignments):
>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   2.1e-22   3.7e-18       6     207 ..       2     232 ..       1     237 [. 0.76

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 2.1e-22
        FSH1   6 kiLcLhGytqsgeiFrakts...alrkllkk.lnvelvyldaplelaekadlpkseseeee......................kseeeeesraWfrkkd 78 
                 k LcLhG   ++e ++ +++    ++k l+  + ++++y+++p+++++++ ++++     +                                      
  KKY20097.1   2 KFLCLHGAIGNTENLSIQLGlhgPIQKDLEIdNAASFHYINGPCQIDSPPGFEDYFGIGPHyrwvddggeakdsmlsrirelpL--------------- 85 
                 89****************85222466666546889***********99999998733222244566555555555555555553............... PP

        FSH1  79 e...............kneyegleesldavkdyikengpfdGiiGFSqGaalaallaslleellkea.shpslkfailvsGfkleepkyeeyy...eed 158
                                 + e ++ ++ ld +  ++++  ++ GiiG+S+Ga +aa+ + + +  ++++ +  ++k+a+++ G  + +p+ +      ++ 
  KKY20097.1  86 GhdpedvmrslakgakSTEWRNHQQVLDLLYGTLENDPEIEGIIGYSEGASMAATFLLDEQWREQQTgRPRRIKCAMFLTGWPPLSPDEKMVLadeSDL 184
                 044444444444444499999999999999999999999*************998765555444444256678***********999755544643455 PP

        FSH1 159 kiqtptLhvlGelDtvvdeerseaLaeafkns.skvlkHpggHfvPnkke 207
                  i +ptLhv+G +D       + aL+++ +++ ++++    gH +P+  +
  KKY20097.1 185 YIDVPTLHVVGANDPYRY--GALALYNVSDEDsAELFDTGKGHTIPRAGD 232
                 56*************999..999******9999*************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.54
# Mc/sec: 1410.23
//
Query:       KKY20098.1  [L=178]
Description: putative acetylxylan esterase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-11   44.5   0.2    3.3e-11   43.5   0.2    1.5  1  Cutinase       Cutinase
     0.0092   15.5   0.0      0.012   15.1   0.0    1.2  1  DUF676         Putative serine esterase (DUF676)
  ------ inclusion threshold ------
      0.057   13.0   0.0       0.08   12.5   0.0    1.2  1  PE-PPE         PE-PPE domain
       0.11   13.1   0.1       0.12   13.0   0.1    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Cutinase  Cutinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.2   7.3e-15   3.3e-11       4     102 ..      16     124 ..      15     173 .. 0.79

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 7.3e-15
                 SEEEEEE--TT--TTTSSHHHHHHHHHHHH.TTT-EEEEE------CGGSTTSS-HHHHHHHHHHHHHHHHH-.TT-EEEEEEETHHHHHHHHHHTT.. CS
    Cutinase   4 dvevifArgttepgglgsvGeavvsalesavgsksvavqgvnYpAdleqlyegseeagakeaaalvqslaskC.PdtkivlgGYSqGaqvidnaiegga 101
                 +v+ i+Arg++    l ++  +   +l++ +gs+s+++    Y+ +++++  +  ++ga  +++ +++++++C  d+ki++ GYS Ga v+++a++g  
  KKY20098.1  16 SVHAIIARGSGTGDVLNVLVALQDLILAEIPGSTSLGLP---YNYSKDNV-YEAVQDGAWLVQNYIEEYVASCgADAKIAVIGYSLGACVMMEALCGTS 110
                 5899*******99999999999999************99...99999985.567899****************559*********************66 PP

                 .............. CS
    Cutinase 102 .............t 102
                               
  KKY20098.1 111 svglwpveaidstY 124
                 55555555554440 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.7e-06     0.012      63      99 ..      73     108 ..      53     127 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.7e-06
      DUF676  63 laeevlevvkkkkdknkkiSfvghSlGgliaraaiak 99 
                 + +++ e+v ++  + +ki ++g+SlG  ++  a++ 
  KKY20098.1  73 VQNYIEEYVASCGAD-AKIAVIGYSLGACVMMEALCG 108
                 568999999999999.8*************9999875 PP

>> PE-PPE  PE-PPE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.8e-05      0.08      23      65 ..      60     105 ..      41     113 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.8e-05
      PE-PPE  23 ltvdeSvaeGtenLeaairaela...agekvvvfGySqgalvasne 65 
                  +v e+v++G+  +++ i++  a   a+ k++v+GyS ga v+ ++
  KKY20098.1  60 DNVYEAVQDGAWLVQNYIEEYVAscgADAKIAVIGYSLGACVMMEA 105
                 467799***********9998888889999************8765 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   2.7e-05      0.12      35      85 ..      23     108 ..       6     151 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.7e-05
                    TTST......................S-GGCS--HHH......CHHHHHHHCCTT.........TTSEEEEEETCHHHHHHHHHHC CS
  Abhydrolase_6  35 pGhG......................rsdpppldled......ladlaalldelaa.......gggpvvlvGHSlGGalalaaapl 85 
                    +G G                      +s + p++++       ++d a l++  ++        + ++ ++G+SlG+ ++++a+ +
     KKY20098.1  23 RGSGtgdvlnvlvalqdlilaeipgsTSLGLPYNYSKdnvyeaVQDGAWLVQNYIEeyvascgADAKIAVIGYSLGACVMMEALCG 108
                    55543355555555444444444444567777777664443324555666666666777797666666***********9995544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1195.21
//
Query:       KKY20099.1  [L=4902]
Description: putative aaa atpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-117  387.7   1.8    1.8e-22   79.8   0.0    8.9  8  AAA_5            AAA domain (dynein-related subfamily)
    1.8e-50  169.6   6.9    9.2e-20   70.8   0.0    5.5  4  AAA_lid_7        Midasin AAA lid domain
    1.9e-29  102.1   0.0      7e-12   45.3   0.0    6.7  6  AAA_3            ATPase family associated with various cellul
    1.3e-28   99.7   0.3    4.1e-06   26.4   0.0    5.9  5  AAA_7            P-loop containing dynein motor region
    7.3e-26   90.3   0.1    3.1e-25   88.3   0.1    2.2  1  AAA_lid_5        Midasin AAA lid domain
    4.2e-23   81.7   0.0    1.9e-06   28.0   0.0    7.7  7  Dynein_heavy     Dynein heavy chain region D6 P-loop domain
    6.2e-21   75.5   7.3     0.0017   18.8   0.0    7.8  5  AAA_16           AAA ATPase domain
    1.7e-20   73.8   0.1    0.00091   19.7   0.0    6.5  5  AAA              ATPase family associated with various cellul
    1.1e-19   70.7   0.3     0.0008   18.5   0.0    7.4  8  AAA_6            Hydrolytic ATP binding site of dynein motor 
    2.2e-14   53.5   5.9      0.025   14.6   0.0    5.7  5  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    4.3e-14   53.2   0.3      0.017   15.7   0.0    6.5  5  AAA_18           AAA domain
    1.4e-13   51.3   0.1      0.022   15.0   0.0    6.6  5  AAA_22           AAA domain
    1.2e-12   48.0   0.0      0.038   14.0   0.0    6.3  6  AAA_14           AAA domain
    1.9e-12   47.5   0.0      0.085   13.0   0.0    5.9  5  AAA_33           AAA domain
    5.7e-12   45.6   0.1       0.46   10.2   0.0    6.1  5  Sigma54_activat  Sigma-54 interaction domain
    9.4e-11   41.5   2.3        6.8    6.0   0.0    7.8  8  Mg_chelatase     Magnesium chelatase, subunit ChlI
    3.9e-10   40.0   0.2       0.07   13.3   0.0    5.8  5  Sigma54_activ_2  Sigma-54 interaction domain
    2.7e-08   34.4  10.1      0.047   14.2   0.1    6.1  5  ABC_tran         ABC transporter
    3.3e-08   33.9   2.5       0.13   12.7   0.1    5.6  5  RNA_helicase     RNA helicase
    3.9e-08   33.4   0.1      0.036   14.0   0.0    5.0  4  Rad17            Rad17 P-loop domain
      7e-08   31.9   0.6       0.63    9.0   0.0    5.4  5  T2SSE            Type II/IV secretion system protein
    8.8e-08   32.2   2.5       0.39   10.6   0.1    5.1  4  RsgA_GTPase      RsgA GTPase
    1.5e-07   31.3   4.5       0.85    9.3   0.0    6.0  6  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    3.3e-07   29.8   4.5        2.3    7.4   0.0    6.5  6  Zeta_toxin       Zeta toxin
    4.2e-07   29.6   3.8        2.1    8.2   0.0    5.8  5  AAA_29           P-loop containing region of AAA domain
    9.7e-07   29.2   3.7        4.4    7.6   0.0    5.4  4  AAA_19           AAA domain
    3.8e-06   26.4   0.7        1.4    8.0   0.0    4.9  5  TIP49            TIP49 P-loop domain
    3.9e-06   26.9   8.9       0.19   11.7   0.0    5.2  5  NACHT            NACHT domain
    1.9e-05   24.5   0.1          4    7.1   0.0    4.7  4  IstB_IS21        IstB-like ATP binding protein
    0.00015   21.5   6.7       0.55    9.8   0.3    5.2  5  SRP54            SRP54-type protein, GTPase domain
    0.00056   19.4   0.3         21    4.4   0.0    5.1  5  TniB             Bacterial TniB protein
    0.00059   19.7   0.2         10    5.8   0.0    4.2  3  Bac_DnaA         Bacterial dnaA  protein
    0.00059   20.1   2.8        2.4    8.4   0.1    4.5  3  AAA_28           AAA domain
     0.0006   19.6   4.5        0.6    9.8   0.1    4.7  5  AAA_24           AAA domain
    0.00081   19.6   4.0         21    5.3   0.0    5.3  5  Roc              Ras of Complex, Roc, domain of DAPkinase
     0.0011   18.5   4.5        1.4    8.4   0.0    5.1  4  AAA_25           AAA domain
     0.0012   18.7   0.0        3.7    7.3   0.0    3.9  3  DEAD             DEAD/DEAH box helicase
     0.0013   18.8   2.9        8.8    6.5   0.0    5.4  5  MMR_HSR1         50S ribosome-binding GTPase
     0.0072   16.1   2.9         21    4.8   0.1    4.9  5  PduV-EutP        Ethanolamine utilisation - propanediol utili
     0.0074   16.2   5.2        5.7    6.8   0.0    4.5  4  NTPase_1         NTPase
  ------ inclusion threshold ------
      0.013   14.8   0.2        5.3    6.3   0.0    3.8  3  AAA_8            P-loop containing dynein motor region D4
       0.03   14.0   0.7         15    5.2   0.0    4.1  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.032   13.8   6.7        5.3    6.6   0.0    4.7  5  cobW             CobW/HypB/UreG, nucleotide-binding domain
       0.04   13.0   0.0        1.4    8.0   0.0    3.6  4  AAA_9            ATP-binding dynein motor region
      0.042   13.7   2.3       0.68    9.8   0.0    4.0  3  CPT              Chloramphenicol phosphotransferase-like prot
      0.063   13.0   0.3       0.45   10.2   0.0    2.3  2  DUF1415          Protein of unknown function (DUF1415)
      0.066   13.3   0.0        4.5    7.3   0.0    3.1  2  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
       0.24   10.8   1.8         26    4.2   0.0    3.9  4  PhoH             PhoH-like protein
       0.25   11.3   2.0         27    4.6   0.0    3.5  3  AAA_31           AAA domain
       0.64    9.8   5.3         28    4.5   0.0    4.0  3  dNK              Deoxynucleoside kinase
        1.3    8.7   7.2         67    3.1   0.1    5.1  5  ATP_bind_1       Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   3.8e-22   1.3e-19       2     124 ..     306     425 ..     305     442 .. 0.92
   2 !   26.2   0.0   1.8e-08   6.4e-06       1      47 [.     632     678 ..     632     698 .. 0.90
   3 !   31.0   0.0   5.9e-10   2.1e-07      52     138 .]     795     884 ..     776     884 .. 0.80
   4 !   79.8   0.0   5.1e-25   1.8e-22       2     138 .]    1069    1204 ..    1068    1204 .. 0.92
   5 !   23.8   0.0   9.9e-08   3.5e-05       1      48 [.    1355    1402 ..    1355    1417 .. 0.89
   6 !   47.4   0.0   5.2e-15   1.8e-12      48     138 .]    1460    1554 ..    1438    1554 .. 0.88
   7 !   65.9   0.0     1e-20   3.5e-18       2     138 .]    1735    1873 ..    1734    1873 .. 0.90
   8 !   32.1   0.0   2.7e-10   9.5e-08      27     137 ..    2139    2249 ..    2120    2250 .. 0.74

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 3.8e-22
                 EEEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..- CS
       AAA_5   2 vlLvGppGtgKselaerlaaal..nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrlllee 98 
                  lLvG  G+gK++++   a+ l   +++ +  l+++t ++ l+g +  + gt +++ ++l++a+reg+ +++++++ra++ev++ Ll+l+e+ +ll+++
  KKY20099.1 306 TLLVGYAGSGKTSIVNDAARKLgaATSMITLHLNEQTDAKSLLGIYTASAGTFKWQAGILTKAVREGRWVLIEDLDRAPQEVIGLLLPLIERGELLIPN 404
                 69********************877788888899***************************************************************** PP

                 SSSEEE---......-EEEEEESS-- CS
       AAA_5  99 ggelvkaknddllerfrviatanpld 124
                 ++e ++a++      fr++at  ++ 
  KKY20099.1 405 RNEHIRAAQG-----FRLLATIRSQT 425
                 *******995.....9****988876 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 1.8e-08
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B-- CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrrei 47 
                 ++lLvG++G+gK++ +++la+ l++++++++l+++ +++d++g+ ++
  KKY20099.1 632 PLLLVGETGIGKTTAIQYLAKKLGKKMTVINLSQQSESSDILGGFKP 678
                 58*****************************************9884 PP

  == domain 3  score: 31.0 bits;  conditional E-value: 5.9e-10
                 .....--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---........-EEEEEESS--..-TT-TTHHHHTT- CS
       AAA_5  52 tslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeggelvkakndd.ller.frviatanpld.rslnelspalrsRf 138
                  ++v++++ +a r+g+ ++lDE++ a +++l+s lsll++    ++     ++ +++  +  + fr++a++np+   ++ +l + +rsRf
  KKY20099.1 795 FAFVEGKVIQALRNGDWVLLDEINLAAPDTLESILSLLNHGDDGPPTALLSESGQAEMvFGHKeFRIFAAMNPATdSGKRDLASGIRSRF 884
                 6799************************************876544443333333333333335**********98999999999**999 PP

  == domain 4  score: 79.8 bits;  conditional E-value: 5.1e-25
                  EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--..........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5    2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik.ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrll.l 96  
                  +lL+Gp+ +gK++++e+la+  + +++ +++++ t  ++ +g +  + +g+ ++++++lvra reg+ +vlDE++ a+++vl++L++ll+++r l +
  KKY20099.1 1069 ILLQGPTSSGKTSMVEYLAKISGHKFVRINNHEHTDLQEYLGTYASDeEGRLRYQEGVLVRALREGHWVVLDELNLAPTDVLEALNRLLDDNRELfI 1165
                  89*******************************************999*****************************************98665505 PP

                  .-SSSEEE---......-EEEEEESS--...-TT-TTHHHHTT- CS
       AAA_5   97 eeggelvkaknddllerfrviatanpld..rslnelspalrsRf 138 
                  +e +e v+  ++     f+++at np+   ++++ ls a+r Rf
  KKY20099.1 1166 PETQETVRPHPN-----FMLFATQNPAGvyGGRKHLSRAFRNRF 1204
                  666666666665.....************9*************9 PP

  == domain 5  score: 23.8 bits;  conditional E-value: 9.9e-08
                  EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--. CS
       AAA_5    1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik 48  
                  +vlL+G++G gK+++ + ++++l++++ +v+ + ++++ dl+g  ++ 
  KKY20099.1 1355 PVLLIGETGAGKTQVFQTISHMLGKSLSIVNAHVNLETGDLIGAQRPI 1402
                  59****************************************987765 PP

  == domain 6  score: 47.4 bits;  conditional E-value: 5.2e-15
                  .............--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---......-EEEEEESS--..-TT-TTHHHHTT- CS
       AAA_5   48 k....ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeggelvkaknddllerfrviatanpld.rslnelspalrsRf 138 
                  +    +   ++ d++lv a++ g++++lDE+  a+++vl++L+s+le  r  +   ++  ka+ + ++ +f+++at+np   +++ els+alr R+
  KKY20099.1 1460 NivrrQALFEWADGSLVSAMKAGDHFLLDEIALADDSVLERLNSVLEPTRTIFLAEKGADKASVT-AAADFQFFATMNPGGdYGKRELSAALRNRL 1554
                  4444566689*****************************************99999999988875.5666***********************996 PP

  == domain 7  score: 65.9 bits;  conditional E-value: 1e-20
                  EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.............--------G-SEEEEESGGG--HHHHHHHHHHHHSSEE CS
       AAA_5    2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik....ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrl 94  
                  +lL G+pG+gK++l+  la+a++ +++ ++l+++t   dl+g+  +      g  s++d+p+ ra++ ge ++lDE + a+++vl+ L+  l++r+ 
  KKY20099.1 1735 ILLEGDPGVGKTTLIAALARATGHSLTRINLSDQTDLMDLFGSDVPLegesAGSFSWRDGPFLRAMQAGEWVLLDEMNLASQSVLEGLNACLDHRKQ 1831
                  89****************************************9777678999******************************************986 PP

                  E...-SSSEEE---......-EEEEEESS--...-TT-TTHHHHTT- CS
       AAA_5   95 l.leeggelvkaknddllerfrviatanpld..rslnelspalrsRf 138 
                    + e+++  +  ++     f ++a+ np +  ++++ l ++++ Rf
  KKY20099.1 1832 VyITELDQTFRRHPK-----FVLFAAQNPHSqgGGRKGLPASFVNRF 1873
                  505555555555554.....***********9999999999999998 PP

  == domain 8  score: 32.1 bits;  conditional E-value: 2.7e-10
                  EEEEE--TT--HHHHH--B--..........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE...-SSSEEE---..........-EEE CS
       AAA_5   27 veyvqltrdtteedlkgrreik.ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllle.eggelvkaknddller....frvi 117 
                  v+ +  ++ ++ e+l+ + + +     +++d++lv+a+++g+ +vl+  + +++++l++L+sl+e + +l   e ++  + ++          frv+
  KKY20099.1 2139 VFPIYVQEAISLEHLITSSQESeRPSFAWTDGILVQAMEHGSWVVLNNANLCNPSILDRLNSLMEPNGRLEInEQHKADGSPRVV---VphanFRVF 2232
                  5555556666666666655544466789*************************************87666440444444444432...13577**** PP

                  EEESS--.-TT-TTHHHHTT CS
       AAA_5  118 atanpldrslnelspalrsR 137 
                   t+ p +    els+a+r R
  KKY20099.1 2233 LTMDPKY---GELSKAMRNR 2249
                  *******...5666677776 PP

>> AAA_lid_7  Midasin AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   2.6e-22   9.2e-20       3     106 .]     458     568 ..     456     568 .. 0.96
   2 !   44.4   1.0   4.5e-14   1.6e-11       1     105 [.    1216    1309 ..    1216    1310 .. 0.98
   3 ?    4.5   0.0      0.11        39      28      58 ..    1594    1619 ..    1566    1669 .. 0.73
   4 !   48.5   0.0   2.3e-15   7.9e-13       1     104 [.    1885    1982 ..    1885    1984 .. 0.95

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 2.6e-22
   AAA_lid_7   3 eeilqskfpllasvadklievyeelrseqsssrsfs.gspreislRDLlkWcrRlsalldrsg......flspsvreeifleavdvFaaslstqedrlr 94 
                 e+il++k+pll+  ++++++ +++l +++ s+ +   ++ r++++RDLlkWc+R++++l+  g      ++ + + ++ifl+a+d+F+ s+s+   r++
  KKY20099.1 458 ESILRKKYPLLERQIPSILASFTRLCALTGSPAVTNgMRFRPVTIRDLLKWCTRINRRLRMLGvrsgqeAVPEDLGDHIFLDAIDCFVRSFSDIGIRSE 556
                 68******************************7776799********************9999************************************ PP

   AAA_lid_7  95 vaeviaehlgls 106
                 +a++i+++l+ls
  KKY20099.1 557 IASIIGQELHLS 568
                 *********997 PP

  == domain 2  score: 44.4 bits;  conditional E-value: 4.5e-14
   AAA_lid_7    1 eLeeilqskfpllasvadklievyeelrseqsssrsfsgspreislRDLlkWcrRlsalldrsgflspsvreeifleavdvFaaslstqedrlrvae 97  
                  eLe il+++ +++ s+++k+++vy++l+ +++ sr f  ++   +lRDL++W+ R +             re+++ ++++++a+++++++++l+v +
  KKY20099.1 1216 ELEFILKERAQIPPSFCAKIVAVYKKLSLMRQLSRLFEQRNSFATLRDLFRWALRKADD-----------REQLAIHGFMLLAERVREPAEKLAVKQ 1301
                  89*****************************************************9888...........9************************** PP

   AAA_lid_7   98 viaehlgl 105 
                  +i+e++++
  KKY20099.1 1302 IIEEVMKV 1309
                  *****987 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.11
   AAA_lid_7   28 rseqsssrsfs.gspreislRDLlkWcrRlsa 58  
                  ++       fs +s+ ++slR+Ll W++ + a
  KKY20099.1 1594 KQS------FSrSSETQVSLRELLSWADFMLA 1619
                  333......4446*************987654 PP

  == domain 4  score: 48.5 bits;  conditional E-value: 2.3e-15
   AAA_lid_7    1 eLeeilqskf.pllasvadklievyeelrseqsssrsfs..gspreislRDLlkWcrRlsalldrsgflspsvreeifleavdvFaaslstqedrlr 94  
                  +L+ i  + + +l+ + ++k+i++++e+ ++ +++++++  g p++++lRD+ +W++++++          +   +++ +a  ++ ++++t+e+r++
  KKY20099.1 1885 DLRIIAIRTYpQLPDQDIEKVISIIREVADMLHHNSRIGsvGGPWDVNLRDIYRWLQLCTRA---------NNFIDPVHFATLILSQRFRTEEQRRA 1972
                  899999****88***********************99999*******************999.........5689********************** PP

   AAA_lid_7   95 vaeviaehlg 104 
                  v +vi +++g
  KKY20099.1 1973 VGSVITSVFG 1982
                  ******9997 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0      0.12        42       3     109 ..     307     420 ..     305     434 .. 0.76
   2 !    8.3   0.0    0.0057         2       2      43 ..     633     674 ..     632     686 .. 0.92
   3 ?    4.6   0.0     0.077        27      50     129 ..     791     884 ..     777     886 .. 0.69
   4 !   24.9   0.0   4.1e-08   1.4e-05       2     130 ..    1069    1205 ..    1068    1206 .. 0.82
   5 ?    5.4   0.0     0.044        15       2      45 ..    1356    1399 ..    1355    1417 .. 0.90
   6 !   45.3   0.0     2e-14     7e-12       2     130 ..    1735    1874 ..    1734    1875 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.12
       AAA_3   3 llegvPGlaktllvkalakaldlefkriqftpdll..PsdilGtevfeekekefefkkGpvfanl.....lladeinrappktqsalleameerqvtve 94 
                 ll g  G +kt +v+  a++l++  + i +  +       +l   ++++++ +f+ ++G + + +     +l ++++rap  +   ll  +e  ++ + 
  KKY20099.1 307 LLVGYAGSGKTSIVNDAARKLGAATSMITLHLNEQtdAKSLL--GIYTASAGTFKWQAGILTKAVregrwVLIEDLDRAPQEVIGLLLPLIERGELLIP 403
                 788999*****************9999987655430034444..58999999******998876555555999**********9999999998777665 PP

       AAA_3  95 get..hklpepflvlat 109
                 +++   +  + f +lat
  KKY20099.1 404 NRNehIRAAQGFRLLAT 420
                 55400445667888887 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0057
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilG 43 
                 +ll g  G++kt++++ lak+l+ +++ i +      sdilG
  KKY20099.1 633 LLLVGETGIGKTTAIQYLAKKLGKKMTVINLSQQSESSDILG 674
                 5889999**************************999999998 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.077
       AAA_3  50 kekefefkkGpvfanl.....lladeinrappktqsalleameerq.......vtvegethkl..pepflvlatqnPieqeGtyplpeaqldrf 129
                 ++  f f +G v++ l     +l dein a+p t  ++l  ++  +       ++ +g++  +  ++ f ++a+ nP   +G   l+     rf
  KKY20099.1 791 NKFAFAFVEGKVIQALrngdwVLLDEINLAAPDTLESILSLLNHGDdgpptalLSESGQAEMVfgHKEFRIFAAMNPATDSGKRDLASGIRSRF 884
                 3457888899998754444449************999998887643222222244445544444467899999999999999888888777777 PP

  == domain 4  score: 24.9 bits;  conditional E-value: 4.1e-08
       AAA_3    2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfanl.....lladeinrappktqsal...leameerq 90  
                  +ll+g    +kt +v+ lak+ + +f ri         + lGt    ++e ++++++G ++  l     ++ de+n ap+ +  al   l+  +e  
  KKY20099.1 1069 ILLQGPTSSGKTSMVEYLAKISGHKFVRINNHEHTDLQEYLGTYAS-DEEGRLRYQEGVLVRALreghwVVLDELNLAPTDVLEALnrlLDDNRELF 1164
                  689999999*********************9988888999**9765.56789******99976544444999*********9999722255555666 PP

       AAA_3   91 vtvegethklpepflvlatqnPieqeG.typlpeaqldrfl 130 
                  +  ++et + + +f+++atqnP    G   +l  a  +rfl
  KKY20099.1 1165 IPETQETVRPHPNFMLFATQNPAGVYGgRKHLSRAFRNRFL 1205
                  7778888888999*********9987615679999999997 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.044
       AAA_3    2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGte 45  
                  vll g  G +kt++ ++++++l+ +++ +    +l  +d++G++
  KKY20099.1 1356 VLLIGETGAGKTQVFQTISHMLGKSLSIVNAHVNLETGDLIGAQ 1399
                  799999************************************86 PP

  == domain 6  score: 45.3 bits;  conditional E-value: 2e-14
       AAA_3    2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeeke..kefefkkGpvfanl.....lladeinrappktqsal...leamee 88  
                  +lleg PG++kt+l+ ala+a + +++ri +       d+ G++v  e e   +f+ + Gp +  +     +l de+n a+  +   l   l+  ++
  KKY20099.1 1735 ILLEGDPGVGKTTLIAALARATGHSLTRINLSDQTDLMDLFGSDVPLEGEsaGSFSWRDGPFLRAMqagewVLLDEMNLASQSVLEGLnacLDHRKQ 1831
                  79*****************************9887788****999655443499*******99754444449*********9997766111555555 PP

       AAA_3   89 rqvtvegethklpepflvlatqnPieqeGt.yplpeaqldrfl 130 
                    +t  ++t++ + +f+++a+qnP  q G    lp + ++rf 
  KKY20099.1 1832 VYITELDQTFRRHPKFVLFAAQNPHSQGGGrKGLPASFVNRFT 1874
                  56888999*****************998761569*99999996 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.2e-08   4.1e-06       7      81 ..     277     350 ..     272     391 .. 0.86
   2 !   19.1   0.0     2e-06   0.00072      29      77 ..     626     671 ..     612     675 .. 0.82
   3 ?    6.7   0.0     0.013       4.7      25      58 ..    1058    1090 ..    1037    1146 .. 0.80
   4 !   24.5   0.0   4.6e-08   1.6e-05      11      63 ..    1331    1382 ..    1322    1393 .. 0.84
   5 !   14.4   0.0   5.5e-05      0.02      19      76 ..    1718    1772 ..    1714    1777 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.2e-08
       AAA_7   7 akfseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdi 81 
                 ++ s++lVpt  t  +   l   l   kp+llvG +G+GKt+i++d  +kl    ++++t+ ++ qt+a++l  i
  KKY20099.1 277 VPQSSTLVPTSTTQGNLGRLASALLDTKPTLLVGYAGSGKTSIVNDAARKLG-AATSMITLHLNEQTDAKSLLGI 350
                 567899********999999999999**************************.9999************998665 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 2e-06
       AAA_7  29 llknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanq 77 
                  ++++ p+llvG+tG GKt+ i+ l kkl  +  ++++in+s+q ++++
  KKY20099.1 626 GVQSSEPLLLVGETGIGKTTAIQYLAKKLG-K--KMTVINLSQQSESSD 671
                 578999************************.4..455677888877765 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.013
       AAA_7   25 llelllknkkpvllvGptGtGKtviikdllkkld 58  
                  l + +  +  p+ll Gpt +GKt++++ l  k++
  KKY20099.1 1058 LARAVSMRMFPILLQGPTSSGKTSMVEYL-AKIS 1090
                  5566677789**************99854.4444 PP

  == domain 4  score: 24.5 bits;  conditional E-value: 4.6e-08
       AAA_7   11 eilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekyl 63  
                  + +V t  t r+ +l+ + ++++ pvll+G+tG GKt + +++ + l  ++++
  KKY20099.1 1331 SGIVWTFATRRLAVLIMKAIEHNEPVLLIGETGAGKTQVFQTISHMLG-KSLS 1382
                  56899*************************************999888.4444 PP

  == domain 5  score: 14.4 bits;  conditional E-value: 5.5e-05
       AAA_7   19 tvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsan 76  
                  t+r+ + +   ++ +kp+ll G+ G+GKt++i  l ++     ++ + in+s qt+ +
  KKY20099.1 1718 TCRNAMRVVRAMQVDKPILLEGDPGVGKTTLIAALARATG---HSLTRINLSDQTDLM 1772
                  778888888999**********************999877...889999999999866 PP

>> AAA_lid_5  Midasin AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.1   8.9e-28   3.1e-25       1     104 [.     898    1001 ..     898    1003 .. 0.95

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 8.9e-28
   AAA_lid_5    1 DLellvknyLkevsltdqalvtdvvefYlelkklaerkeltdgagqkphfSlRtlsraLsyartilklaglrralyeGfsmsFltqLdsesrkkvek 97  
                  DL +l+++y  +++++d++l +d++ +Yl++++l  r +ltdgag+ phfS+Rtl+r+L y r+++ ++glrralyeGfsmsFlt+L++es+  +  
  KKY20099.1  898 DLLTLIETYVGDLTVSDKRLSSDLAYLYLAVQELNDRRQLTDGAGNLPHFSIRTLVRTLLYLRKHVGVYGLRRALYEGFSMSFLTMLSKESELGLIP 994 
                  99*****************************************************************************************987777 PP

   AAA_lid_5   98 lirkill 104 
                  +++k++l
  KKY20099.1  995 VLDKYVL 1001
                  7777665 PP

>> Dynein_heavy  Dynein heavy chain region D6 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0      0.14        50      45      68 ..     362     385 ..     304     426 .. 0.73
   2 ?    3.7   0.0      0.18        62       2      42 ..     629     669 ..     628     673 .. 0.91
   3 !    8.6   0.0    0.0053       1.9      47      99 ..     801     870 ..     770     893 .. 0.70
   4 !   15.3   0.0   4.5e-05     0.016      43      97 ..    1122    1187 ..    1068    1191 .. 0.84
   5 ?    1.6   0.0      0.78   2.7e+02      44      96 ..    1471    1537 ..    1455    1552 .. 0.80
   6 !    8.4   0.0    0.0064       2.2      50      98 ..    1798    1857 ..    1795    1881 .. 0.77
   7 !   28.0   0.0   5.3e-09   1.9e-06      45     115 ..    2169    2257 ..    2112    2260 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.14
                   HHHHHHHHHHT-EEEEE-GGG-CC CS
  Dynein_heavy  45 ekalekaakegsWvlLqNchlaps 68 
                     +l+ka++eg+Wvl+++   ap+
    KKY20099.1 362 AGILTKAVREGRWVLIEDLDRAPQ 385
                   56899************9988865 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.18
                   TTS-EEEEE-TT--THHHHHHHHHHTT--EEEEETTSHHHH CS
  Dynein_heavy   2 pttPvlfilspgadptesleklakklkklvksvslGqgqee 42 
                   ++ P+l++ ++g+  t++++ lakkl+k ++ + l q++e+
    KKY20099.1 629 SSEPLLLVGETGIGKTTAIQYLAKKLGKKMTVINLSQQSES 669
                   578***********************9999*******9774 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0053
                   HHHHHHHHT-EEEEE-GGG-.CCCHHHHHHH..........................HHTT-EEEEEEES-TT CS
  Dynein_heavy  47 alekaakegsWvlLqNchla.pswlkeLekileel...................eeklhssfRlwltsepspk 99 
                    + +a ++g+WvlL ++ la p+   +Le+il+ l                       h++fR++  ++p+++
    KKY20099.1 801 KVIQALRNGDWVLLDEINLAaPD---TLESILSLLnhgddgpptallsesgqaeMVFGHKEFRIFAAMNPATD 870
                   456899**************333...66666432233466666666665565544455779999999988874 PP

  == domain 4  score: 15.3 bits;  conditional E-value: 4.5e-05
                    HHHHHHHHHHHHT-EEEEE-GGG-.CCCHHHHHHH.................HHTT-EEEEEEES- CS
  Dynein_heavy   43 eaekalekaakegsWvlLqNchla.pswlkeLekileel..........eeklhssfRlwltseps 97  
                      e +l +a +eg+Wv+L +  la ++ l+ L+++l++           + + h++f l+ t +p+
    KKY20099.1 1122 YQEGVLVRALREGHWVVLDELNLApTDVLEALNRLLDDNrelfipetqeTVRPHPNFMLFATQNPA 1187
                    55678999****************778899*****88667788888866666789*****999885 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.78
                    HHHHHHHHHHHT-EEEEE-GGG-.CCCHHHHHHH....................HHTT-EEEEEEES CS
  Dynein_heavy   44 aekalekaakegsWvlLqNchla.pswlkeLekileel.............eeklhssfRlwltsep 96  
                    a+  l +a+k g+  lL ++ la  s l++L+++le +             + ++  +f+ + t++p
    KKY20099.1 1471 ADGSLVSAMKAGDHFLLDEIALAdDSVLERLNSVLEPTrtiflaekgadkaSVTAAADFQFFATMNP 1537
                    6667899****************778899*****885556677766666545555569999999887 PP

  == domain 6  score: 8.4 bits;  conditional E-value: 0.0064
                    HHHHHT-EEEEE-GGG-.CCCHHHHHHH.................HHTT-EEEEEEES-T CS
  Dynein_heavy   50 kaakegsWvlLqNchla.pswlkeLekileel..........eeklhssfRlwltsepsp 98  
                    +a++ g+WvlL ++ la +s l+ L+  l++           + + h++f l+   +p++
    KKY20099.1 1798 RAMQAGEWVLLDEMNLAsQSVLEGLNACLDHRkqvyiteldqTFRRHPKFVLFAAQNPHS 1857
                    699**************7777999*99977445567666665445578898988888887 PP

  == domain 7  score: 28.0 bits;  conditional E-value: 5.3e-09
                    HHHHHHHHHHT-EEEEE-GGG-.CCCHHHHHHH....................HHT.......T-EEEEEEES-TT.S-HHHHHTSEEEEE-- CS
  Dynein_heavy   45 ekalekaakegsWvlLqNchla.pswlkeLekileel.............eeklhs.......sfRlwltsepspk.fPislLqssikvtnep 115 
                    + +l +a+++gsWv+L+N  l+ ps l++L++++e               +    +       +fR++lt++p+   + +++ ++++ + +ep
    KKY20099.1 2169 DGILVQAMEHGSWVVLNNANLCnPSILDRLNSLMEPNgrleineqhkadgS----PrvvvphaNFRVFLTMDPKYGeLSKAMRNRCVEIYMEP 2257
                    56899*****************9999*******775456665554554440....05555555**********9855*********9999998 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   8.7e-05     0.031      25      52 ..     304     331 ..     291     419 .. 0.78
   2 !   18.8   0.0   4.8e-06    0.0017      19     163 ..     627     836 ..     614     844 .. 0.52
   3 !   11.8   0.1   0.00065      0.23      12      76 ..    1055    1116 ..    1041    1164 .. 0.66
   4 !   11.2   0.0     0.001      0.35      12      81 ..    1342    1416 ..    1338    1509 .. 0.64
   5 !   14.4   0.0   0.00011     0.037      15      50 ..    1722    1757 ..    1718    1829 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.7e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekdg 52 
                   +ll+G++G+GK+s+v+ ++r l ++ 
  KKY20099.1 304 KPTLLVGYAGSGKTSIVNDAARKLGAAT 331
                 5689******************999882 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 4.8e-06
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekdggif..lrgkcdqlesa.....ipysalaqalareellrqlldeaesaeleawrekleeala.... 106
                 v s+  e +ll+Ge G+GK++ ++ l++ l k+   +  l+++ +++  +      p  +   al   e +++l d++ s   +          +    
  KKY20099.1 627 VQSS--EPLLLVGETGIGKTTAIQYLAKKLGKKM-TVinLSQQSESS--DilggfKPVTTRSLALPMVEEFNDLFDQTFS---AKRN-------Qkfla 710
                 3333..77*************************4.441344444444..3333332221111111111222222222111...1111.......02222 PP

      AAA_16 107 ...................................................................avpelagaea...srllellk..rllallsrd 133
                                                                                    + ++l+++++   + ++ ++   + ++ l+++
  KKY20099.1 711 sishcikkqnyqrlvvlweeavkmaennfgdkdtngatqtagkpakrrkiegtkyevlqnkwsnfavQLDSLRASISkqsNKFAFAFVegKVIQALRNG 809
                 222344455555666666666666666777777777777777777666666666777777777776655555555555553333333200333555553 PP

      AAA_16 134 erplvlvlDdlqwadeaslqllaaLlrlle 163
                 +    ++lD++  a +++l+ + +Ll  ++
  KKY20099.1 810 DW---VLLDEINLAAPDTLESILSLLNHGD 836
                 33...6777777777777777444444444 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00065
      AAA_16   12 LlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqal 76  
                  Ll++ ++v++     +ll G+  +GK+s+v+ l++ ++++   f+r ++++++   +y+  +a+  
  KKY20099.1 1055 LLNLARAVSMRMF-PILLQGPTSSGKTSMVEYLAK-ISGH--KFVRINNHEHTDLQEYLGtYASDE 1116
                  6666677776665.688*****************6.6655..388888888855566655344443 PP

  == domain 4  score: 11.2 bits;  conditional E-value: 0.001
      AAA_16   12 LlsalervrsgrpelvllsGesGvGKsslvrellralekd....ggiflrgkcdqlesaipy...salaqalareel 81  
                  L+ ++ ++ ++  e vll+Ge G GK+ + +++ + l k+    ++++  ++ d  ++++p    +a+ q+l re+l
  KKY20099.1 1342 LAVLIMKAIEHN-EPVLLIGETGAGKTQVFQTISHMLGKSlsivNAHVNLETGDLIGAQRPIrnrAAIEQQL-REDL 1416
                  555555555555.78*******************98888888887888888888886665543322233333.4222 PP

  == domain 5  score: 14.4 bits;  conditional E-value: 0.00011
      AAA_16   15 alervrsgrp.elvllsGesGvGKsslvrellralek 50  
                  a++ vr+ +    +ll G++GvGK++l+ +l+ra ++
  KKY20099.1 1722 AMRVVRAMQVdKPILLEGDPGVGKTTLIAALARA-TG 1757
                  56656666667889*****************964.33 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0093       3.3       2      35 ..     307     342 ..     306     389 .. 0.74
   2 !   17.0   0.0   1.8e-05    0.0062       1      57 [.     633     707 ..     633     752 .. 0.65
   3 !   15.2   0.0     6e-05     0.021       1      68 [.    1069    1143 ..    1069    1205 .. 0.67
   4 ?    4.6   0.0      0.11        40       1      32 [.    1356    1387 ..    1356    1422 .. 0.81
   5 !   19.7   0.0   2.6e-06   0.00091       1      38 [.    1735    1781 ..    1735    1903 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0093
                 EEESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCS CS
         AAA   2 llyGppGtGKTllakavakelg..vefleisgsell 35 
                 ll+G  G GKT++++  a++lg  ++++++ + e +
  KKY20099.1 307 LLVGYAGSGKTSIVNDAARKLGaaTSMITLHLNEQT 342
                 89******************9844455666655555 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1.8e-05
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS..................STTHHHHHHHHHHHHHHHTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellsk..................yvgesekkirelfkeakeka 57 
                 +ll+G  G+GKT++++ +ak+lg ++  i++s+  ++                  +v+e ++ + ++f++ ++++
  KKY20099.1 633 LLLVGETGIGKTTAIQYLAKKLGKKMTVINLSQQSESsdilggfkpvttrslalpMVEEFNDLFDQTFSAKRNQK 707
                 69********************98888888888774457888888888888888855555555555554433332 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 6e-05
                  EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTS......TSEEEEEETGG CS
         AAA    1 vllyGppGtGKTllakavakelgvefleisgsell..skyvgesekkirelfkeakeka......kpsilfiDEid 68  
                  +ll Gp   GKT++++ +ak +g +f++i+ +e +  ++y+g  +++ ++ ++  +         + + +++DE+ 
  KKY20099.1 1069 ILLQGPTSSGKTSMVEYLAKISGHKFVRINNHEHTdlQEYLGTYASDEEGRLRYQEG-VlvralrEGHWVVLDELN 1143
                  699*****************************9994444555544444444433211.123333233677777775 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.11
                  EEEESSTTSSHHHHHHHHHHHHTHEEEEEETT CS
         AAA    1 vllyGppGtGKTllakavakelgvefleisgs 32  
                  vll+G  G GKT + + + + lg ++  ++++
  KKY20099.1 1356 VLLIGETGAGKTQVFQTISHMLGKSLSIVNAH 1387
                  79*******************98666555554 PP

  == domain 5  score: 19.7 bits;  conditional E-value: 2.6e-06
                  EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS.........S CS
         AAA    1 vllyGppGtGKTllakavakelgvefleisgsellsk.........y 38  
                  +ll G pG+GKT+l+ a+a+ +g ++ +i++s+ ++          +
  KKY20099.1 1735 ILLEGDPGVGKTTLIAALARATGHSLTRINLSDQTDLmdlfgsdvpL 1781
                  699***************************99988334555555553 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.3    0.0012      0.42       9      80 ..     280     353 ..     276     362 .. 0.84
   2 !   14.5   0.0   3.7e-05     0.013      36     117 ..     634     718 ..     612     738 .. 0.75
   3 ?   -0.1   0.0         1   3.7e+02     132     173 ..     856     898 ..     799     936 .. 0.76
   4 !   18.5   0.0   2.3e-06    0.0008      11      74 ..    1044    1108 ..    1040    1205 .. 0.79
   5 !    9.4   0.0    0.0013      0.47      12      70 ..    1333    1391 ..    1327    1397 .. 0.92
   6 ?   -1.5   0.0       2.7   9.5e+02     128     165 ..    1522    1560 ..    1506    1613 .. 0.67
   7 !    6.7   0.0    0.0085         3      16      72 ..    1716    1772 ..    1713    1777 .. 0.92
   8 ?   -3.3   0.0       9.3   3.3e+03      82     118 ..    1800    1828 ..    1796    1876 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0012
       AAA_6   9 serLviTpltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakq..vvvfncsdqldykslgkifkG 80 
                 s+ Lv T  t+     l++Al  +  + + G ag GKt  v d a++l+    ++ ++ ++q d+ksl  i++ 
  KKY20099.1 280 SSTLVPTSTTQGNLGRLASALLDTKPTLLVGYAGSGKTSIVNDAARKLGAAtsMITLHLNEQTDAKSLLGIYTA 353
                 6789999999999999******9*************************8651166778999****999988875 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 3.7e-05
       AAA_6  36 apaGpagtGKtEtvkdLakalakqvvvfncsdqldykslgkifkGlaq.sGaWgCfdeFnrielevLSvvaqq..iktiqqalke 117
                  + G +g GKt +++ Lak+l+k ++v+n s+q + + +   fk +++ s a    +eFn +  + +S+  +q  + +i +++k+
  KKY20099.1 634 LLVGETGIGKTTAIQYLAKKLGKKMTVINLSQQSESSDILGGFKPVTTrSLALPMVEEFNDLFDQTFSAKRNQkfLASISHCIKK 718
                 5689******************************999999888888651456777888888877777776544335566666655 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1
       AAA_6 132 nksvgifitmnp.gyagrteLPdnLkalfRpvammvPdlelIa 173
                 +k+++if  mnp + +g+ +L   +++ f ++ +  Pd +l  
  KKY20099.1 856 HKEFRIFAAMNPaTDSGKRDLASGIRSRFTEIYVDSPDRDLAD 898
                 68899*******55689*********************98754 PP

  == domain 4  score: 18.5 bits;  conditional E-value: 2.3e-06
       AAA_6   11 rLviTpltdrcyltltqAlklklgga.paGpagtGKtEtvkdLakalakqvvvfncsdqldyksl 74  
                  + +iTp  +r  l l++A+++++    ++Gp+  GKt  v  Lak  ++ +v +n +++ d +  
  KKY20099.1 1044 QYIITPFVERNLLNLARAVSMRMFPIlLQGPTSSGKTSMVEYLAKISGHKFVRINNHEHTDLQEY 1108
                  679*******************9975279*****************************9998764 PP

  == domain 5  score: 9.4 bits;  conditional E-value: 0.0013
       AAA_6   12 LviTpltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqld 70  
                  +v T  t r  + +++A++ +    + G +g+GKt   + ++++l+k + ++n + +l+
  KKY20099.1 1333 IVWTFATRRLAVLIMKAIEHNEPVLLIGETGAGKTQVFQTISHMLGKSLSIVNAHVNLE 1391
                  799999**********************************************9887665 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 2.7
       AAA_6  128 eiklnksvgifitmnp.gyagrteLPdnLkalfRpvamm 165 
                  +++  +++++f tmnp g  g+ eL   L+  + ++ + 
  KKY20099.1 1522 SVTAAADFQFFATMNPgGDYGKRELSAALRNRLTEIWVP 1560
                  567778899*******55679999999999877766554 PP

  == domain 7  score: 6.7 bits;  conditional E-value: 0.0085
       AAA_6   16 pltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldyk 72  
                  p t r  + +++A+++     ++G  g GKt  +  La+a ++ ++ +n sdq d  
  KKY20099.1 1716 PTTCRNAMRVVRAMQVDKPILLEGDPGVGKTTLIAALARATGHSLTRINLSDQTDLM 1772
                  77888889999******************************************9975 PP

  == domain 8  score: -3.3 bits;  conditional E-value: 9.3
       AAA_6   82 aqsGaWgCfdeFnrielevLSvvaqqiktiqqalkek 118 
                  +q+G W+ +de+n  + +vL           +a+ ++
  KKY20099.1 1800 MQAGEWVLLDEMNLASQSVLEGL--------NACLDH 1828
                  68899999999887777666443........333333 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1     0.035        12      13      46 ..     295     330 ..     285     336 .. 0.75
   2 !   11.7   0.1   0.00054      0.19      15      47 ..     620     659 ..     608     663 .. 0.71
   3 !    7.8   0.0    0.0091       3.2      11      50 ..    1059    1099 ..    1050    1113 .. 0.72
   4 !   11.0   0.1   0.00091      0.32       7      46 ..    1339    1380 ..    1336    1387 .. 0.80
   5 !   14.6   0.0   7.2e-05     0.025      14      46 ..    1725    1759 ..    1714    1766 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.035
                 HHHHCH..TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  13 klakal..gdvilLeGdLGaGKTtlvrglakalgve 46 
                 +la+al  ++  lL G  G+GKT +v   a++lg +
  KKY20099.1 295 RLASALldTKPTLLVGYAGSGKTSIVNDAARKLGAA 330
                 3444343456699*******************9975 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00054
                 HHCH......TEEEEEEESTTSSHHHHHHHHHHHTT--.- CS
        TsaE  15 akal......gdvilLeGdLGaGKTtlvrglakalgve.e 47 
                  +++      ++ +lL G+ G GKTt ++ lak+lg + +
  KKY20099.1 620 IETCaagvqsSEPLLLVGETGIGKTTAIQYLAKKLGKKmT 659
                 33333322334459*********************97654 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0091
                  HHHHHHCHTEE..EEEEESTTSSHHHHHHHHHHHTT--..---- CS
        TsaE   11 gkklakalgdv..ilLeGdLGaGKTtlvrglakalgve..evkS 50  
                  ++++     ++  ilL+G+  +GKT +v  lak  g++  +++ 
  KKY20099.1 1059 ARAVSM---RMfpILLQGPTSSGKTSMVEYLAKISGHKfvRINN 1099
                  333322...22469*******************99998666665 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00091
                  HHHHHHHHHHCH..TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE    7 tealgkklakal..gdvilLeGdLGaGKTtlvrglakalgve 46  
                  t++l+  + ka+  ++ +lL G+ GaGKT+  + + + lg +
  KKY20099.1 1339 TRRLAVLIMKAIehNEPVLLIGETGAGKTQVFQTISHMLGKS 1380
                  67777777776665566******************9999865 PP

  == domain 5  score: 14.6 bits;  conditional E-value: 7.2e-05
                  HHHCH..TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE   14 lakal..gdvilLeGdLGaGKTtlvrglakalgve 46  
                  + +a+   + ilLeGd G+GKTtl+ +la+a g++
  KKY20099.1 1725 VVRAMqvDKPILLEGDPGVGKTTLIAALARATGHS 1759
                  4343333556*********************9986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.063        22       2      24 ..     307     329 ..     307     386 .. 0.83
   2 ?    7.5   0.0     0.016       5.8       2      44 ..     634     679 ..     633     726 .. 0.74
   3 !    8.3   0.0    0.0088       3.1       1      81 [.    1069    1141 ..    1069    1155 .. 0.63
   4 ?    7.2   0.0      0.02         7       1      69 [.    1356    1425 ..    1356    1468 .. 0.75
   5 !   15.7   0.0   4.8e-05     0.017       1      31 [.    1735    1768 ..    1735    1838 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.063
      AAA_18   2 lltGtpGvGKttlakeLskrlgf 24 
                 ll G++G+GKt++ +  +++lg 
  KKY20099.1 307 LLVGYAGSGKTSIVNDAARKLGA 329
                 589**************999844 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.016
      AAA_18   2 lltGtpGvGKttlakeLskrlgf...gvnlrdvakenglllevdpe 44 
                 ll G  G GKtt  ++L+k+lg    ++nl++    +++l ++ p 
  KKY20099.1 634 LLVGETGIGKTTAIQYLAKKLGKkmtVINLSQQSESSDILGGFKPV 679
                 588999**************94446766666666666655555555 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0088
      AAA_18    1 IlltGtpGvGKttlakeLskrlgf..gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidg 81  
                  Ill G+  +GKt++ ++L+k  g   +++ ++ +++ + +l+  +   de+ rl+ +   +l++al+e       g+++v+d 
  KKY20099.1 1069 ILLQGPTSSGKTSMVEYLAKISGHkfVRINNHEHTDLQEYLGTYAS--DEEGRLRYQE-GVLVRALRE-------GHWVVLDE 1141
                  899***************9985444444334444333333333333..4555555554.556666666.......56666665 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.02
      AAA_18    1 IlltGtpGvGKttlakeLskrl.gf..gvnlrdvakenglllevdpealdeskrldedkldklldaleenss 69  
                  +ll G  G+GKt++ + +s +l ++   vn   ++  ++l   + p   ++   ++++ ++ l +++  ++s
  KKY20099.1 1356 VLLIGETGAGKTQVFQTISHMLgKSlsIVNAHVNLETGDLIGAQRPI--RNRAAIEQQLREDLKNLMWSANS 1425
                  7899*****************96669888888888888888888888..77777777777777666655555 PP

  == domain 5  score: 15.7 bits;  conditional E-value: 4.8e-05
      AAA_18    1 IlltGtpGvGKttlakeLskrlgf...gvnlrdv 31  
                  Ill G pGvGKttl  +L++ +g     +nl+d 
  KKY20099.1 1735 ILLEGDPGVGKTTLIAALARATGHsltRINLSDQ 1768
                  99******************99433675555554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1      0.14        49       8      55 ..     306     346 ..     302     366 .. 0.71
   2 !   15.0   0.0   6.2e-05     0.022       8      58 ..     633     674 ..     627     733 .. 0.82
   3 ?    2.6   0.0      0.42   1.5e+02       8     117 ..    1069    1158 ..    1068    1169 .. 0.69
   4 !    8.1   0.0    0.0088       3.1       7      32 ..    1355    1380 ..    1349    1508 .. 0.70
   5 !   11.6   0.0   0.00071      0.25       6      57 ..    1733    1775 ..    1728    1833 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.14
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskd 55 
                 ++++G +G+GKT  ++  +++l +         + ++  l+++t+ k+
  KKY20099.1 306 TLLVGYAGSGKTSIVNDAARKLGA-------ATSMITLHLNEQTDAKS 346
                 799***************999964.......34444444444444443 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 6.2e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllr 58 
                 l+++Ge+G+GKTt ++ l+++l         +++   ++l+++++s+d+l 
  KKY20099.1 633 LLLVGETGIGKTTAIQYLAKKL---------GKKMTVINLSQQSESSDILG 674
                 89********************.........88888888888888887765 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.42
      AAA_22    8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlr 104 
                  +++ G++ +GKT  ++ l++           + ++v+++  + t++++ l   +++ + +l +   ++  l++al     + +  + +++DE     
  KKY20099.1 1069 ILLQGPTSSGKTSMVEYLAKIS---------GHKFVRINNHEHTDLQEYLGTYASDEEGRLRY---QEGVLVRAL-----REG--HWVVLDELNLA- 1145
                  6788**************9998.........99999999999997777777776666654444...333333332.....222..25677777666. PP

      AAA_22  105 seealeeLrslln 117 
                  + ++le L +ll+
  KKY20099.1 1146 PTDVLEALNRLLD 1158
                  6666666666655 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.0088
      AAA_22    7 ilvvtGesGtGKTtllrrlleqldee 32  
                   ++++Ge+G+GKT + +++ + l + 
  KKY20099.1 1355 PVLLIGETGAGKTQVFQTISHMLGKS 1380
                  679***************99999543 PP

  == domain 5  score: 11.6 bits;  conditional E-value: 0.00071
      AAA_22    6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdll 57  
                  + +++ G +G+GKTtl++ l++           + ++ +++l+ +t++ dl+
  KKY20099.1 1733 KPILLEGDPGVGKTTLIAALARAT---------GHSLTRINLSDQTDLMDLF 1775
                  568999****************98.........8999999999999887775 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.067        23       3      46 ..     304     346 ..     302     378 .. 0.86
   2 !    8.1   0.0    0.0075       2.6       3      44 ..     631     669 ..     629     723 .. 0.82
   3 ?   -0.2   0.0       2.7   9.3e+02      33      89 ..     774     834 ..     762     848 .. 0.67
   4 !   14.0   0.0   0.00011     0.038       4      93 ..    1068    1163 ..    1066    1168 .. 0.71
   5 ?   -1.4   0.0       6.3   2.2e+03       2      40 ..    1353    1392 ..    1352    1419 .. 0.63
   6 !   11.0   0.0    0.0009      0.32       3      98 ..    1733    1835 ..    1731    1838 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.067
      AAA_14   3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkl 46 
                 k+ +++G   +GKT ++++ +++l   + s++ + l++++d+k+
  KKY20099.1 304 KPTLLVGYAGSGKTSIVNDAARKLG-AATSMITLHLNEQTDAKS 346
                 78899*****************999.889999999999888654 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0075
      AAA_14   3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdk 44 
                 ++l+++G   +GKTt ++ l+k+l    +++  inl +++++
  KKY20099.1 631 EPLLLVGETGIGKTTAIQYLAKKLG---KKMTVINLSQQSES 669
                 688999***************9999...99999999998774 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 2.7
      AAA_14  33 ilyinldderdkkladpekllelilek..lke..ekktylflDEiqev.pewekalkslvde 89 
                  + ++ld+ r + +++++k+  ++ e   + +  ++  +++lDEi  + p+  + + sl+++
  KKY20099.1 774 NFAVQLDSLRASISKQSNKFAFAFVEGkvI-QalRNGDWVLLDEINLAaPDTLESILSLLNH 834
                 566777777776666666666666665433.34778999******97546666666666655 PP

  == domain 4  score: 14.0 bits;  conditional E-value: 0.00011
      AAA_14    4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderd......kkladpe...kllelileklke..ekktylflDEiqevpe.wekalkslvd 88  
                  +++++G+  +GKT +++ l+k +     +++ in  +++d      + ++d+e   ++ e +l    +  ++ ++++lDE   +p+ + +al++l+d
  KKY20099.1 1068 PILLQGPTSSGKTSMVEYLAKISG---HKFVRINNHEHTDlqeylgTYASDEEgrlRYQEGVLV---RalREGHWVVLDELNLAPTdVLEALNRLLD 1158
                  5799***************98777...8899998877777443333212223233333333433...14558999********985499******** PP

      AAA_14   89 egknl 93  
                  ++++l
  KKY20099.1 1159 DNREL 1163
                  99775 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 6.3
      AAA_14    2 rkilvitGaRrvGKTtllkqlikellvkkesil..yinldd 40  
                  ++++++ G   +GKT +  q i++ l k+ si+   +nl++
  KKY20099.1 1353 NEPVLLIGETGAGKTQVF-QTISHMLGKSLSIVnaHVNLET 1392
                  6789999********995.5566666344444411345555 PP

  == domain 6  score: 11.0 bits;  conditional E-value: 0.0009
      AAA_14    3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklke..............ekktylflDEiqevpe.wekalk 84  
                  k+++++G   vGKTtl+  l++       s   inl d++d +    ++++ +  +   +              +  ++++lDE+  +++ + + l+
  KKY20099.1 1733 KPILLEGDPGVGKTTLIAALARATG---HSLTRINLSDQTDLMDLFGSDVPLEGES---AgsfswrdgpflramQAGEWVLLDEMNLASQsVLEGLN 1823
                  789999999************9999...9*********999554422222211111...11122333445556667899*****9987542788899 PP

      AAA_14   85 slvdegknldvivt 98  
                   ++d++k  +v++t
  KKY20099.1 1824 ACLDHRK--QVYIT 1835
                  9999883..56666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.015       5.3       3      28 ..     307     338 ..     306     397 .. 0.78
   2 !    9.8   0.0    0.0023      0.81       3      39 ..     634     674 ..     633     738 .. 0.69
   3 ?    6.3   0.0     0.028       9.7       2      83 ..    1069    1147 ..    1069    1172 .. 0.74
   4 ?    2.8   0.0      0.34   1.2e+02       2      33 ..    1356    1402 ..    1356    1489 .. 0.67
   5 !   13.0   0.0   0.00024     0.085       2      85 ..    1735    1847 ..    1735    1857 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.015
      AAA_33   3 llvGlpGsGKstlaerllkklg......avll 28 
                 llvG +GsGK+  +   ++klg      + +l
  KKY20099.1 307 LLVGYAGSGKTSIVNDAARKLGaatsmiTLHL 338
                 79********************8766433334 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0023
      AAA_33   3 llvGlpGsGKstlaerllkklg....avllssdtlrrrlfg 39 
                 llvG  G GK+t ++ l+kklg    ++ ls+ ++++ + g
  KKY20099.1 634 LLVGETGIGKTTAIQYLAKKLGkkmtVINLSQQSESSDILG 674
                 79**********************54444666665555544 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.028
      AAA_33    2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsrr 83  
                  +ll G+  sGK+  +e l+k  g  +v+++  + ++ l +      t+ ++ + rl+++ ++++ +al++g  v+ld  nl + 
  KKY20099.1 1069 ILLQGPTSSGKTSMVEYLAKISGhkFVRINNHE-HTDLQEYLG---TYASDEEGRLRYQ-EGVLVRALREGHWVVLDELNLAPT 1147
                  5789***************99999999999875.667766544...3434455666666.477777888888888888777664 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.34
      AAA_33    2 vllvGlpGsGKstlaerllkklg..avllssdt.............l 33  
                  vll+G  G+GK+++ + +   lg    +++  +             +
  KKY20099.1 1356 VLLIGETGAGKTQVFQTISHMLGksLSIVNAHVnletgdligaqrpI 1402
                  789************99988888774445544444335555555552 PP

  == domain 5  score: 13.0 bits;  conditional E-value: 0.00024
      AAA_33    2 vllvGlpGsGKstlaerllkklg..avllssdt............................lrrrlfgtdqqskt........dytrvldrlyqiln 60  
                  +ll G pG+GK+tl+  l++++g   ++++  +                            +                      + +  + + q + 
  KKY20099.1 1735 ILLEGDPGVGKTTLIAALARATGhsLTRINLSDqtdlmdlfgsdvplegesagsfswrdgpF------------LramqagewVLLDEMNLASQSVL 1819
                  6899*******************997777766645556655555555555555555333333............03333333322223334444444 PP

      AAA_33   61 elarkalsagrnvil...datnlsrrer 85  
                  e ++ +l ++++v +   d+t++++ ++
  KKY20099.1 1820 EGLNACLDHRKQVYItelDQTFRRHPKF 1847
                  4455556666664433669999988766 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.46   1.6e+02      17     121 ..     298     399 ..     286     422 .. 0.69
   2 !    7.8   0.0    0.0069       2.4       8      52 ..     616     657 ..     611     672 .. 0.76
   3 ?    6.7   0.0     0.015       5.3      11     120 ..    1055    1160 ..    1050    1185 .. 0.79
   4 !   10.2   0.0    0.0013      0.46      11      44 ..    1342    1375 ..    1336    1395 .. 0.80
   5 !    9.7   0.0    0.0018      0.64      14     121 ..    1724    1830 ..    1714    1858 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.46
                      HHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHT..TTSEEEEETGGGS-HH CS
  Sigma54_activat  17 kvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfeka..dgGtlfLDeigelple 108
                      ++   + ++l++G  G+GK+ + +   ++   + ++++++    ++e+  + +L G+   a  G+ k ++G + ka  +g  ++++++ + p e
       KKY20099.1 298 SALLDTKPTLLVGYAGSGKTSIVNDAARKLGAA-TSMITLH---LNEQTDAKSLLGIYT-ASAGTFKWQAGILTKAvrEGRWVLIEDLDRAPQE 386
                      555566789**********99988776655533.3355544...445555555666544.3456667777888777434556777777777777 PP

                      HHHHHHHHHHHSE CS
  Sigma54_activat 109 lQekLlrvlqege 121
                      +   Ll ++++ge
       KKY20099.1 387 VIGLLLPLIERGE 399
                      7777777777776 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0069
                      HHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS- CS
  Sigma54_activat   8 lkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekp 52 
                       ++l+e++++ ++++ ++l++Ge+G GK++  + + ++     k+
       KKY20099.1 616 ASRLIETCAAGVQSSEPLLLVGETGIGKTTAIQYLAKKLG---KK 657
                      5678899999999***************987776655433...33 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.015
                       HHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHT..TTSEEEEE CS
  Sigma54_activat   11 lleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfeka..dgGtlfLD 100 
                       ll+ +++v     ++l++G + +GK+ + + + + s    ++fv++n  + ++    +e  G+ +    G  + ++G + +a  +g  + LD
       KKY20099.1 1055 LLNLARAVSMRMFPILLQGPTSSGKTSMVEYLAKISG---HKFVRINNHEHTD---LQEYLGTYASDEEGRLRYQEGVLVRAlrEGHWVVLD 1140
                       5677788888889***************999987776...7899999766544...345678888888888888888887775456678888 PP

                       TGGGS-HHHHHHHHHHHHHS CS
  Sigma54_activat  101 eigelplelQekLlrvlqeg 120 
                       e++  p+++ e L r+l+++
       KKY20099.1 1141 ELNLAPTDVLEALNRLLDDN 1160
                       88888888888888888876 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.0013
                       HHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat   11 lleqikkvaktdlsvlitGesGtGKellaraihe 44  
                       l   i k+++++ +vl+ Ge+G+GK+ + ++i +
       KKY20099.1 1342 LAVLIMKAIEHNEPVLLIGETGAGKTQVFQTISH 1375
                       5567889999****************99988854 PP

  == domain 5  score: 9.7 bits;  conditional E-value: 0.0018
                       HHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBS...SSSSTTTSS-BEHHHHHT..TTSEEEEE CS
  Sigma54_activat   14 qikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhe...kGaFtGAekekkGlfeka..dgGtlfLD 100 
                       ++ ++++ d ++l++G+ G+GK++l  a+ +a+    +++ ++n ++ ++ l+  +LFG     +G   G+ + + G f +a   g  ++LD
       KKY20099.1 1724 RVVRAMQVDKPILLEGDPGVGKTTLIAALARAT---GHSLTRINLSDQTD-LM--DLFGSDvplEGESAGSFSWRDGPFLRAmqAGEWVLLD 1809
                       566788999*************99887776554...57788999888654.33..5777643336777777788888887773234578899 PP

                       TGGGS-HHHHHHHHHHHHHSE CS
  Sigma54_activat  101 eigelplelQekLlrvlqege 121 
                       e++  + ++ e L  +l++++
       KKY20099.1 1810 EMNLASQSVLEGLNACLDHRK 1830
                       988888888777777777766 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.5   8.6e+02      26      46 ..     307     327 ..     299     356 .. 0.74
   2 ?    5.7   0.0     0.024       8.6       9      46 ..     614     654 ..     610     681 .. 0.79
   3 ?   -0.5   0.0       1.9   6.9e+02      24      45 ..    1068    1089 ..    1052    1115 .. 0.83
   4 ?    4.9   0.0     0.042        15     110     159 ..    1137    1187 ..    1117    1202 .. 0.84
   5 ?    5.4   0.0      0.03        10      12      48 ..    1341    1379 ..    1334    1401 .. 0.86
   6 ?    5.0   0.0     0.041        14     110     159 ..    1485    1538 ..    1471    1557 .. 0.77
   7 ?    3.6   0.0      0.11        38      22      43 ..    1732    1753 ..    1715    1768 .. 0.78
   8 ?    6.0   0.0     0.019       6.8     110     162 ..    1806    1859 ..    1787    1874 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.5
  Mg_chelatase  26 llvGppGsGKtmlakrlpsll 46 
                   llvG +GsGKt + +  +  l
    KKY20099.1 307 LLVGYAGSGKTSIVNDAARKL 327
                   89*********9977655444 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.024
  Mg_chelatase   9 eeakraleiaaaGgHn...lllvGppGsGKtmlakrlpsll 46 
                   ++a r +e +aaG  +   lllvG  G GKt  ++ l++ l
    KKY20099.1 614 RHASRLIETCAAGVQSsepLLLVGETGIGKTTAIQYLAKKL 654
                   579999*******7654459***********9888776555 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.9
  Mg_chelatase   24 nlllvGppGsGKtmlakrlpsl 45  
                     +ll Gp  sGKt + + l+++
    KKY20099.1 1068 PILLQGPTSSGKTSMVEYLAKI 1089
                    5899*********999998877 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.042
  Mg_chelatase  110 LfLDElpefkrkvlevLRePled.gevtisrakakvefparfqlvaamNpc 159 
                    ++LDEl    ++vle+L + l+d +e+ i  ++++v+   +f+l a+ Np+
    KKY20099.1 1137 VVLDELNLAPTDVLEALNRLLDDnRELFIPETQETVRPHPNFMLFATQNPA 1187
                    68*******************8626899*********999*********97 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.03
  Mg_chelatase   12 kraleiaaaGgHn..lllvGppGsGKtmlakrlpsllpp 48  
                    + a+ i  a +Hn  +ll+G  G+GKt + + ++ +l +
    KKY20099.1 1341 RLAVLIMKAIEHNepVLLIGETGAGKTQVFQTISHMLGK 1379
                    5677888888998779****************9999865 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.041
  Mg_chelatase  110 LfLDElpefkrkvlevLRePledg.evtisra...kakvefparfqlvaamNpc 159 
                    ++LDE++  + +vle L + le + ++ ++ +   ka+v+  a+fq+ a+mNp 
    KKY20099.1 1485 FLLDEIALADDSVLERLNSVLEPTrTIFLAEKgadKASVTAAADFQFFATMNPG 1538
                    569*******************65156666532225678999**********95 PP

  == domain 7  score: 3.6 bits;  conditional E-value: 0.11
  Mg_chelatase   22 gHnlllvGppGsGKtmlakrlp 43  
                       +ll G pG GKt l+++l+
    KKY20099.1 1732 DKPILLEGDPGVGKTTLIAALA 1753
                    4569************998875 PP

  == domain 8  score: 6.0 bits;  conditional E-value: 0.019
  Mg_chelatase  110 LfLDElpefkrkvlevLRePled.gevtisrakakvefparfqlvaamNpcpcg 162 
                    ++LDE+   +++vle L   l++ ++v i+  +++++   +f l aa Np   g
    KKY20099.1 1806 VLLDEMNLASQSVLEGLNACLDHrKQVYITELDQTFRRHPKFVLFAAQNPHSQG 1859
                    579******************97268**********9999**********7765 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       5.4   1.9e+03      13      37 ..     295     319 ..     293     345 .. 0.89
   2 !   13.3   0.0    0.0002      0.07       6      67 ..     615     675 ..     610     731 .. 0.79
   3 ?    4.0   0.0      0.14        50      17      54 ..    1062    1097 ..    1052    1124 .. 0.77
   4 !   12.5   0.0   0.00034      0.12      10      54 ..    1342    1386 ..    1336    1398 .. 0.85
   5 ?    1.3   0.0         1   3.5e+02      13      49 ..    1724    1760 ..    1718    1778 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 5.4
                      HHHHHHT-SS-EEEEEETT--HHHH CS
  Sigma54_activ_2  13 rLeqaaqsklpvfltGekGsgkelv 37 
                      rL++a   + p +l+G +Gsgk+++
       KKY20099.1 295 RLASALLDTKPTLLVGYAGSGKTSI 319
                      7888999999************976 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.0002
                      HHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-HHHHHHH CS
  Sigma54_activ_2   6 aiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklpldlleq 67 
                        ++l e+ ++ +qs+ p++l+Ge G gk++  ++L+k+ g+++ + ++ +  ++ +d+l  
       KKY20099.1 615 HASRLIETCAAGVQSSEPLLLVGETGIGKTTAIQYLAKKLGKKMTVINLSQ-QSESSDILGG 675
                      5677777888889*****************************988888844.4455566554 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.14
                       HHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SST CS
  Sigma54_activ_2   17 aaqsklpvfltGekGsgkelvArlLhknsgpwleifvv 54  
                       ++ +++p++l G+  sgk+++ ++L+k sg   + +++
       KKY20099.1 1062 VSMRMFPILLQGPTSSGKTSMVEYLAKISGH--KFVRI 1097
                       56899**********************9988..33333 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 0.00034
                       HHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SST CS
  Sigma54_activ_2   10 lkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvv 54  
                       l+  + +a + + pv+l+Ge G+gk+ v +++++  g+ l+i++ 
       KKY20099.1 1342 LAVLIMKAIEHNEPVLLIGETGAGKTQVFQTISHMLGKSLSIVNA 1386
                       555567788999**************************9999775 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 1
                       HHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE CS
  Sigma54_activ_2   13 rLeqaaqsklpvfltGekGsgkelvArlLhknsgpwl 49  
                       r+  a q   p++l G++G gk++   +L+   g  l
       KKY20099.1 1724 RVVRAMQVDKPILLEGDPGVGKTTLIAALARATGHSL 1760
                       5667789999*************99999988877744 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.48   1.7e+02      14      45 ..     306     337 ..     294     363 .. 0.80
   2 !   14.2   0.1   0.00013     0.047       7      80 ..     626     718 ..     620     773 .. 0.72
   3 ?   -0.7   0.0       5.3   1.9e+03      16      37 ..    1071    1092 ..    1068    1127 .. 0.78
   4 !   11.3   0.0    0.0011      0.38       8      37 ..    1350    1379 ..    1346    1455 .. 0.78
   5 ?    6.7   0.0     0.027       9.6      14      42 ..    1735    1763 ..    1727    1785 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.48
                 EEEEESTTSSHHHHHHHHTTSS--SEEEEEET CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllkpteGeilld 45 
                 + +vG  G+GK+++++  a++l  +   i+l 
  KKY20099.1 306 TLLVGYAGSGKTSIVNDAARKLGAATSMITLH 337
                 679***********998877777766666655 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 0.00013
                 EEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG......B-HHHCCHCEEEE-SS--S-TTSB.HHHH............H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxx.xxxx............x RF
    ABC_tran   7 klkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke......qeleslrkeigvlpqepqlfpelt.vren............e 80 
                  ++ +e + +vGe+G GK+t ++ la++l +++  i+l +++ ++      ++ +  +  + ++++ + lf+++  +++n            +
  KKY20099.1 626 GVQSSEPLLLVGETGIGKTTAIQYLAKKLGKKMTVINLSQQSESSdilggfKPVTTRSLALPMVEEFNDLFDQTFsAKRNqkflasishcikK 718
                 67889999**********************999999888444333488888888888888888888877777775344446666666666551 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 5.3
                  EEESTTSSHHHHHHHHTTSS-- CS
                  xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   16 ivGenGaGKStLlkllagllkp 37  
                  + G++ +GK+++++ la+ +  
  KKY20099.1 1071 LQGPTSSGKTSMVEYLAKISGH 1092
                  78*************9988654 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 0.0011
                  EETTSEEEEEESTTSSHHHHHHHHTTSS-- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran    8 lkegekvaivGenGaGKStLlkllagllkp 37  
                  ++++e v ++Ge+GaGK+ ++++++++l +
  KKY20099.1 1350 IEHNEPVLLIGETGAGKTQVFQTISHMLGK 1379
                  788999******************998765 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.027
                  EEEEESTTSSHHHHHHHHTTSS--SEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   14 vaivGenGaGKStLlkllagllkpteGei 42  
                  + + G+ G GK+tL+++la+ +     +i
  KKY20099.1 1735 ILLEGDPGVGKTTLIAALARATGHSLTRI 1763
                  56789**************9876665555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       2.2   7.7e+02       2      25 ..     307     330 ..     306     354 .. 0.81
   2 !   12.7   0.1   0.00036      0.13       2      28 ..     634     660 ..     633     681 .. 0.82
   3 ?    3.7   0.0      0.23        81       1      26 [.    1069    1094 ..    1069    1116 .. 0.79
   4 ?    4.0   0.0      0.18        63       1      26 [.    1356    1381 ..    1356    1401 .. 0.83
   5 ?    7.0   0.0     0.022       7.6       1      26 [.    1735    1760 ..    1735    1772 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 2.2
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkk 25 
                   +l+G +g GK++++++ a++l  +
    KKY20099.1 307 LLVGYAGSGKTSIVNDAARKLGAA 330
                   58999***********88888744 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00036
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklkl 28 
                   +l+G++g+GK+t++++Lak+l kk+  
    KKY20099.1 634 LLVGETGIGKTTAIQYLAKKLGKKMTV 660
                   789*******************99933 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.23
  RNA_helicase    1 iwlyGpsgeGKStlakeLakallkkl 26  
                    i+l+Gp+  GK++++++Lak    k+
    KKY20099.1 1069 ILLQGPTSSGKTSMVEYLAKISGHKF 1094
                    6899*************998666555 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.18
  RNA_helicase    1 iwlyGpsgeGKStlakeLakallkkl 26  
                    ++l G++g GK+++ +++++ l k+l
    KKY20099.1 1356 VLLIGETGAGKTQVFQTISHMLGKSL 1381
                    5799*************888888776 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.022
  RNA_helicase    1 iwlyGpsgeGKStlakeLakallkkl 26  
                    i+l G++g+GK+tl+  La+a   +l
    KKY20099.1 1735 ILLEGDPGVGKTTLIAALARATGHSL 1760
                    6799***************9987655 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0    0.0001     0.036      47     112 ..     632     695 ..     618     709 .. 0.68
   2 ?    6.0   0.0     0.029        10      48      78 ..    1069    1099 ..    1054    1117 .. 0.84
   3 ?    1.8   0.0      0.56     2e+02      48      80 ..    1356    1388 ..    1342    1400 .. 0.77
   4 ?    4.2   0.0       0.1        37      47      74 ..    1734    1761 ..    1720    1771 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 0.0001
       Rad17  47 iLLisGPsGCgkstvvkvLskelgiklrewlnpvslkepdnqksdfkgltekesrflsqiesfkel 112
                  LL+ G +G gk+t+++ L+k+lg k+   +n  +  e++     fk +t + s  l+++e f++l
  KKY20099.1 632 PLLLVGETGIGKTTAIQYLAKKLGKKMT-VINLSQQSESSDILGGFKPVT-TRSLALPMVEEFNDL 695
                 5999********************9975.455444233333333333332.233346666666655 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.029
       Rad17   48 LLisGPsGCgkstvvkvLskelgiklrewln 78  
                  +L+ GP+  gk+ +v+ L+k+ g k+    n
  KKY20099.1 1069 ILLQGPTSSGKTSMVEYLAKISGHKFVRINN 1099
                  6899*******************99877655 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.56
       Rad17   48 LLisGPsGCgkstvvkvLskelgiklrewlnpv 80  
                  +L+ G +G gk+ v + +s  lg +l      v
  KKY20099.1 1356 VLLIGETGAGKTQVFQTISHMLGKSLSIVNAHV 1388
                  56779******************9986555555 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.1
       Rad17   47 iLLisGPsGCgkstvvkvLskelgiklr 74  
                   +L+ G +G gk+t +  L++  g +l 
  KKY20099.1 1734 PILLEGDPGVGKTTLIAALARATGHSLT 1761
                  47899****************9998875 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1       0.2        71      65     157 ..     238     331 ..     226     337 .. 0.63
   2 ?    4.3   0.1     0.049        17     121     156 ..     622     657 ..     590     668 .. 0.79
   3 !    9.0   0.0    0.0018      0.63     107     150 ..    1044    1087 ..    1012    1107 .. 0.75
   4 !    6.8   0.0    0.0086         3     116     160 ..    1340    1383 ..    1292    1417 .. 0.87
   5 ?    1.2   0.0      0.43   1.5e+02     121     153 ..    1725    1756 ..    1708    1768 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.2
       T2SSE  65 erplqdarlpekgvrl.rvvllPvvag.ealviRkksakeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksd 157
                  r l +a+  ++ +++  +++ P++a    + + ++s    + ++l+ + +++ ++ ++ ++     +  l+ G  gsGKt +++ +  ++ + +
  KKY20099.1 238 TRSLRSAQAVQNCHNFvAASFSPLIALiGDVLVPRQSGVVPQSSTLVPTSTTQGNLGRLASAL-LDTKPTLLVGYAGSGKTSIVNDAARKLGAAT 331
                 555555555544444314566676666433333345555557777887777777777765555.555556666***********99998888774 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.049
       T2SSE 121 vlrkavrerglilvsGgTgsGKttllyallkeinks 156
                 + ++ v++   +l+ G Tg GKtt +  l k++ k+
  KKY20099.1 622 TCAAGVQSSEPLLLVGETGIGKTTAIQYLAKKLGKK 657
                 44566899999**************99998888877 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0018
       T2SSE  107 dlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyall 150 
                  ++++++ ++ ++ ++ r+   +   il+ G+T+sGKt ++  l 
  KKY20099.1 1044 QYIITPFVERNLLNLARAVSMRMFPILLQGPTSSGKTSMVEYLA 1087
                  5666666666666655544445567************9876554 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0086
       T2SSE  116 ekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderi 160 
                   ++a ++ ka++++  +l+ G Tg GKt +  ++ +++ ks   i
  KKY20099.1 1340 RRLAVLIMKAIEHNEPVLLIGETGAGKTQVFQTISHMLGKS-LSI 1383
                  567788999*************************9999887.444 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.43
       T2SSE  121 vlrkavrerglilvsGgTgsGKttllyallkei 153 
                  v+r+ ++  + il+ G  g GKttl+ al    
  KKY20099.1 1725 VVRA-MQVDKPILLEGDPGVGKTTLIAALARAT 1756
                  4444.489999**************99887655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1    0.0011      0.39      84     134 ..     287     338 ..     278     345 .. 0.82
   2 ?    7.4   0.0     0.011       3.7      97     132 ..     627     665 ..     603     674 .. 0.73
   3 ?    1.2   0.0      0.87     3e+02      98     121 ..    1352    1375 ..    1334    1394 .. 0.76
   4 !    7.6   0.0    0.0094       3.3      90     125 ..    1723    1758 ..    1712    1769 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0011
                  TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S------ CS
  RsgA_GTPase  84 aktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevsekl 134
                  ++t+ +l +l+++l d k ++lvG  G GK++++n  + +l ++t+ +  +l
   KKY20099.1 287 STTQGNLGRLASALLDtKPTLLVGYAGSGKTSIVNDAARKLGAATSMITLHL 338
                  45677888888887776*******************9999999998887655 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.011
                  CTT.SEEEEECSTTSSHHHHHHHHCTT-..----S---- CS
  RsgA_GTPase  97 lkd.ktsvlvGqSGvGKStLinallpel..elktgevse 132
                  +++ +  +lvG++G+GK+t i  l+ +l  ++ + ++s+
   KKY20099.1 627 VQSsEPLLLVGETGIGKTTAIQYLAKKLgkKMTVINLSQ 665
                  55446789****************998622444555555 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.87
                   TTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase   98 kdktsvlvGqSGvGKStLinallp 121 
                   +++ ++l+G++G+GK+ +  ++  
   KKY20099.1 1352 HNEPVLLIGETGAGKTQVFQTISH 1375
                   347789**********98887765 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0094
                   HHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase   90 leelkellkdktsvlvGqSGvGKStLinallpelel 125 
                   ++ ++++  dk ++l G  GvGK+tLi al+  +  
   KKY20099.1 1723 MRVVRAMQVDKPILLEGDPGVGKTTLIAALARATGH 1758
                   455556666789999**************9986655 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       3.2   1.1e+03      36      64 ..     306     334 ..     300     358 .. 0.81
   2 ?    6.8   0.0     0.015       5.3      30      65 ..     627     662 ..     614     684 .. 0.79
   3 ?    1.2   0.0      0.75   2.6e+02      16      57 ..    1052    1090 ..    1037    1099 .. 0.68
   4 !    8.0   0.0    0.0063       2.2      20      79 ..    1343    1399 ..    1336    1424 .. 0.83
   5 ?   -0.2   0.0       2.1   7.5e+02      77     136 ..    1474    1535 ..    1466    1557 .. 0.73
   6 !    9.3   0.0    0.0024      0.85      29      61 ..    1727    1760 ..    1720    1774 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 3.2
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkit 64 
                 +ll+G  G Gkt++ +  a++lg+   + 
  KKY20099.1 306 TLLVGYAGSGKTSIVNDAARKLGAATSMI 334
                 699****************9999887654 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.015
      RuvB_N  30 eealdhvllyGpPGlGkttlakiiakelgvklkits 65 
                  ++ + +ll+G  G+Gktt  + +ak+lg k+ +  
  KKY20099.1 627 VQSSEPLLLVGETGIGKTTAIQYLAKKLGKKMTVIN 662
                 5666779**********************9988765 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.75
      RuvB_N   16 keklkifieaakkreealdhvllyGpPGlGkttlakiiakel 57  
                  + +l  +   a++ +  +  +ll+Gp   Gkt++ + +ak  
  KKY20099.1 1052 ERNLLNL---ARAVSMRMFPILLQGPTSSGKTSMVEYLAKIS 1090
                  5555333...44444456679*************99999765 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0063
      RuvB_N   20 kifieaakkreealdhvllyGpPGlGkttlakiiakelgvklkitsgPvlekagdlaall 79  
                  +++i  a + +e    vll+G  G Gkt + + i++ lg +l i  + v  ++gdl++  
  KKY20099.1 1343 AVLIMKAIEHNE---PVLLIGETGAGKTQVFQTISHMLGKSLSIVNAHVNLETGDLIGAQ 1399
                  555555554444...59*****************************99999999998765 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 2.1
      RuvB_N   77 alltnleekdvlfideihrlsraveevlysamedfrldivigkGpsarsi..kldlpkftlv 136 
                  +l++ ++++d +++dei   + +v e l s +e  r   + +kG+   s+    d++ f+ +
  KKY20099.1 1474 SLVSAMKAGDHFLLDEIALADDSVLERLNSVLEPTRTIFLAEKGADKASVtaAADFQFFATM 1535
                  5788999***************************9999999999765554114455555555 PP

  == domain 6  score: 9.3 bits;  conditional E-value: 0.0024
      RuvB_N   29 reealdh.vllyGpPGlGkttlakiiakelgvkl 61  
                  r  ++d  +ll G PG+Gkttl + +a+  g +l
  KKY20099.1 1727 RAMQVDKpILLEGDPGVGKTTLIAALARATGHSL 1760
                  5556665499**************9999888765 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0066       2.3      19      51 ..     306     338 ..     301     383 .. 0.90
   2 ?    6.1   0.1     0.017       6.1      19      49 ..     633     663 ..     619     667 .. 0.84
   3 ?    0.8   0.0      0.73   2.6e+02      19      52 ..    1069    1100 ..    1065    1119 .. 0.82
   4 ?    4.2   0.0     0.063        22      19      46 ..    1356    1383 ..    1346    1388 .. 0.80
   5 ?    5.3   0.0      0.03        10      18      49 ..    1734    1763 ..    1721    1769 .. 0.81
   6 ?   -2.9   0.0       9.5   3.4e+03      68     102 ..    2152    2186 ..    2138    2206 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0066
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrldp 51 
                  ll+G  G+GK+++ ++++++l+++ ++++l  
  KKY20099.1 306 TLLVGYAGSGKTSIVNDAARKLGAATSMITLHL 338
                 5899*******************9999998865 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.017
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrl 49 
                 +ll+G +G GK++++++l+++l+++  v+ l
  KKY20099.1 633 LLLVGETGIGKTTAIQYLAKKLGKKMTVINL 663
                 689*******************777776666 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.73
  Zeta_toxin   19 illgGqpGAGKselaellkdelerqgnvvrldpD 52  
                  ill G + +GK+++ e+l++    + ++vr++  
  KKY20099.1 1069 ILLQGPTSSGKTSMVEYLAKIS--GHKFVRINNH 1100
                  7999**************9998..999**99863 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.063
  Zeta_toxin   19 illgGqpGAGKselaellkdelerqgnv 46  
                  +ll G +GAGK+++ + +   l++  ++
  KKY20099.1 1356 VLLIGETGAGKTQVFQTISHMLGKSLSI 1383
                  7889***********9998888665555 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.03
  Zeta_toxin   18 lillgGqpGAGKselaellkdelerqgnvvrl 49  
                   ill G pG GK++l+++l++++  + +  r+
  KKY20099.1 1734 PILLEGDPGVGKTTLIAALARAT--GHSLTRI 1763
                  5899****************998..5555555 PP

  == domain 6  score: -2.9 bits;  conditional E-value: 9.5
  Zeta_toxin   68 dpkkaseltqkdaselvekllqeaiengyniiveg 102 
                  +  + s+  ++ +  +++ +l +a+e+g  +++  
  KKY20099.1 2152 HLITSSQESERPSFAWTDGILVQAMEHGSWVVLNN 2186
                  556677777888889*************9998865 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1     0.013       4.7      20      42 ..     302     324 ..     292     340 .. 0.80
   2 ?    3.0   0.0      0.24        83      23      39 ..     631     647 ..     622     652 .. 0.83
   3 ?    2.0   0.0       0.5   1.8e+02      25      39 ..    1069    1083 ..    1059    1098 .. 0.85
   4 ?    4.1   0.0      0.11        40      22      43 ..    1353    1374 ..    1347    1382 .. 0.78
   5 !    8.2   0.0    0.0059       2.1      23      43 ..    1733    1753 ..    1723    1768 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.013
      AAA_29  20 dlkgatlltGpsGsGKSTll.DAi 42 
                 d+k  tll+G  GsGK++++ DA 
  KKY20099.1 302 DTKP-TLLVGYAGSGKTSIVnDAA 324
                 4444.9************995665 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.24
      AAA_29  23 gatlltGpsGsGKSTll 39 
                 +  ll+G++G GK+T +
  KKY20099.1 631 EPLLLVGETGIGKTTAI 647
                 4589***********76 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.5
      AAA_29   25 tlltGpsGsGKSTll 39  
                  +ll Gp+ sGK++++
  KKY20099.1 1069 ILLQGPTSSGKTSMV 1083
                  79**********998 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.11
      AAA_29   22 kgatlltGpsGsGKSTllDAiq 43  
                  ++ +ll+G++G+GK+ ++  i+
  KKY20099.1 1353 NEPVLLIGETGAGKTQVFQTIS 1374
                  4568**********98776665 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0059
      AAA_29   23 gatlltGpsGsGKSTllDAiq 43  
                    +ll G+ G+GK+Tl+ A++
  KKY20099.1 1733 KPILLEGDPGVGKTTLIAALA 1753
                  4589*************7765 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.048        17       7      36 ..     300     329 ..     295     342 .. 0.83
   2 ?    4.6   0.1      0.11        37       8      37 ..     628     657 ..     621     667 .. 0.83
   3 ?    7.6   0.0     0.013       4.4       8      38 ..    1351    1381 ..    1345    1508 .. 0.90
   4 ?    7.1   0.1     0.018       6.3       8      32 ..    1730    1754 ..    1723    1764 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.048
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallve 36 
                  l  k+ l+++ +G+GKT +++ + + l +
  KKY20099.1 300 LLDTKPTLLVGYAGSGKTSIVNDAARKLGA 329
                 577899***************998887765 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.11
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhivallvel 37 
                  ++++ll+++  G GKT+ ++   + l + 
  KKY20099.1 628 QSSEPLLLVGETGIGKTTAIQYLAKKLGKK 657
                 56889***************9998887665 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.013
      AAA_19    8 lkekvllvtaGpGtGKTrvlkhivallvelg 38  
                   +++++l+++  G GKT+v ++i ++l +  
  KKY20099.1 1351 EHNEPVLLIGETGAGKTQVFQTISHMLGKSL 1381
                  467899***************9999887765 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.018
      AAA_19    8 lkekvllvtaGpGtGKTrvlkhiva 32  
                    +k++l+ + pG GKT+++ +  +
  KKY20099.1 1730 QVDKPILLEGDPGVGKTTLIAALAR 1754
                  56899**************988765 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.53   1.9e+02      51      83 ..     304     336 ..     296     342 .. 0.86
   2 ?    2.6   0.0      0.18        64      49      84 ..     629     664 ..     612     671 .. 0.80
   3 ?   -0.9   0.0         2   7.1e+02      46      74 ..    1062    1090 ..    1041    1101 .. 0.74
   4 !    8.0   0.0     0.004       1.4      24      81 ..    1331    1384 ..    1312    1395 .. 0.88
   5 !    7.3   0.0    0.0068       2.4      40      79 ..    1723    1761 ..    1713    1770 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.53
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfval 83 
                 +  Ll+G +g+Gkt++    +++lg+ +  ++l
  KKY20099.1 304 KPTLLVGYAGSGKTSIVNDAARKLGAATSMITL 336
                 6789*********************98877665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.18
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  49 aGravLlaGpsgtGktalaiaiskelgedvpfvals 84 
                 +   +Ll+G++g Gkt     ++k+lg+++  + ls
  KKY20099.1 629 SSEPLLLVGETGIGKTTAIQYLAKKLGKKMTVINLS 664
                 55779***********99999*******99887776 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 2
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49   46 kklaGravLlaGpsgtGktalaiaiskel 74  
                    +    +Ll+Gp+++Gkt++   ++k  
  KKY20099.1 1062 VSMRMFPILLQGPTSSGKTSMVEYLAKIS 1090
                  44555569***********9987776654 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.004
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49   24 eglvGqkkareaagvivelikekklaGravLlaGpsgtGktalaiaiskelgedvpfv 81  
                  +g+v   + r+ a +i++ i++++     vLl G++g+Gkt +  +is+ lg+++  v
  KKY20099.1 1331 SGIVWTFATRRLAVLIMKAIEHNE----PVLLIGETGAGKTQVFQTISHMLGKSLSIV 1384
                  588999999999*******99987....79**********************987655 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.0068
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49   40 velikekklaGravLlaGpsgtGktalaiaiskelgedvp 79  
                  ++++++ ++  + +Ll G++g Gkt l  a++++ g+++ 
  KKY20099.1 1723 MRVVRAMQVD-KPILLEGDPGVGKTTLIAALARATGHSLT 1761
                  4566666755.99********************9998765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1      0.23        81       3      24 ..     306     327 ..     304     335 .. 0.83
   2 !    9.1   0.3    0.0033       1.2       2      26 ..     632     656 ..     631     661 .. 0.90
   3 ?   -2.2   0.0       9.6   3.4e+03       3      21 ..    1069    1087 ..    1068    1089 .. 0.88
   4 ?    4.3   0.1     0.097        34       2      25 ..    1355    1378 ..    1354    1383 .. 0.88
   5 !   11.7   0.0   0.00053      0.19       2      24 ..    1734    1756 ..    1733    1761 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.23
                 EEEEC-TTTCHHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklalaw 24 
                  +l G aGsGKT  +   a+++
  KKY20099.1 306 TLLVGYAGSGKTSIVNDAARKL 327
                 6899*********998877776 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0033
                 CEEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawae 26 
                 +++l Ge G+GKTt +q la ++ +
  KKY20099.1 632 PLLLVGETGIGKTTAIQYLAKKLGK 656
                 6899****************99976 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 9.6
                  EEEEC-TTTCHHHHHHHHH CS
       NACHT    3 vilqGeaGsGKTtLlqkla 21  
                  ++lqG+  sGKT +++ la
  KKY20099.1 1069 ILLQGPTSSGKTSMVEYLA 1087
                  89***********998776 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.097
                  CEEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT    2 lvilqGeaGsGKTtLlqklalawa 25  
                  +v+l Ge G GKT   q + + + 
  KKY20099.1 1355 PVLLIGETGAGKTQVFQTISHMLG 1378
                  699***************998776 PP

  == domain 5  score: 11.7 bits;  conditional E-value: 0.00053
                  CEEEEC-TTTCHHHHHHHHHHHH CS
       NACHT    2 lvilqGeaGsGKTtLlqklalaw 24  
                  +++l+G++G+GKTtL++ la+a 
  KKY20099.1 1734 PILLEGDPGVGKTTLIAALARAT 1756
                  689****************9875 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0      0.11        37      44      69 ..     627     656 ..     601     665 .. 0.72
   2 ?    1.4   0.0      0.64   2.2e+02      50     124 ..    1069    1149 ..    1056    1160 .. 0.77
   3 ?    4.9   0.0     0.054        19      41      67 ..    1347    1373 ..    1335    1388 .. 0.81
   4 ?    7.1   0.0     0.012         4      46      86 ..    1731    1771 ..    1711    1778 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.11
   IstB_IS21  44 iekkenivllGpsGvGKs....hlaialgv 69 
                 ++++e ++l+G +G+GK+    +la  lg+
  KKY20099.1 627 VQSSEPLLLVGETGIGKTtaiqYLAKKLGK 656
                 788999***********9444456665555 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.64
   IstB_IS21   50 ivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkr..arrdgklaralkrllkv....dllilDdlgllpldq 124 
                  i+l Gp+  GK+ +   l++   ++ +++     +dL e l +   +++g+l  +   l+++    + ++lD+l l p d 
  KKY20099.1 1069 ILLQGPTSSGKTSMVEYLAKISGHKFVRINNHEHTDLQEYLGTyaSDEEGRLRYQEGVLVRAlregHWVVLDELNLAPTDV 1149
                  7899**************999999999999999999999997621455666655433333332223899999999998875 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.054
   IstB_IS21   41 lsfiekkenivllGpsGvGKshlaial 67  
                  ++ ie++e ++l+G +G+GK+ +  ++
  KKY20099.1 1347 MKAIEHNEPVLLIGETGAGKTQVFQTI 1373
                  456999***************876665 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.012
   IstB_IS21   46 kkenivllGpsGvGKshlaialgveavraglsvlfvrvedL 86  
                    + i+l G +GvGK+ l +al++++ ++ +++     +dL
  KKY20099.1 1731 VDKPILLEGDPGVGKTTLIAALARATGHSLTRINLSDQTDL 1771
                  5567999***************9987666666655555555 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2      0.24        83       4      26 ..     306     328 ..     303     337 .. 0.81
   2 !    9.8   0.3    0.0016      0.55       4      29 ..     633     658 ..     630     665 .. 0.86
   3 ?   -2.0   0.0       6.7   2.3e+03       4      25 ..    1069    1090 ..    1067    1095 .. 0.88
   4 ?    2.5   0.0      0.27        96       4      28 ..    1356    1380 ..    1353    1414 .. 0.79
   5 ?    5.1   0.0     0.045        16       4      25 ..    1735    1756 ..    1732    1766 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.24
                 EEEEESTTSSHHHHHHHHHHHHH CS
       SRP54   4 illvGlqGaGKTttlaKLaallk 26 
                 +llvG  G+GKT+ +   a++l 
  KKY20099.1 306 TLLVGYAGSGKTSIVNDAARKLG 328
                 69***********9998887765 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0016
                 EEEEESTTSSHHHHHHHHHHHHHHTT CS
       SRP54   4 illvGlqGaGKTttlaKLaallkkeg 29 
                 +llvG +G+GKTt++  La++l k+ 
  KKY20099.1 633 LLLVGETGIGKTTAIQYLAKKLGKKM 658
                 69*****************9998875 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 6.7
                  EEEEESTTSSHHHHHHHHHHHH CS
       SRP54    4 illvGlqGaGKTttlaKLaall 25  
                  ill G++ +GKT+ +  La++ 
  KKY20099.1 1069 ILLQGPTSSGKTSMVEYLAKIS 1090
                  8999***********9999875 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.27
                  EEEEESTTSSHHHHHHHHHHHHHHT CS
       SRP54    4 illvGlqGaGKTttlaKLaallkke 28  
                  +ll+G +GaGKT+    ++++l k+
  KKY20099.1 1356 VLLIGETGAGKTQVFQTISHMLGKS 1380
                  79***********999999998776 PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.045
                  EEEEESTTSSHHHHHHHHHHHH CS
       SRP54    4 illvGlqGaGKTttlaKLaall 25  
                  ill G  G+GKTt +a La+  
  KKY20099.1 1735 ILLEGDPGVGKTTLIAALARAT 1756
                  899999*************875 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0       1.4   4.9e+02      36      58 ..     304     326 ..     293     335 .. 0.84
   2 ?    4.4   0.0      0.06        21      36      58 ..     631     653 ..     615     672 .. 0.83
   3 ?    4.1   0.0     0.079        28      30      57 ..    1061    1088 ..    1041    1104 .. 0.78
   4 ?    2.0   0.0      0.33   1.1e+02      22      54 ..    1341    1372 ..    1336    1385 .. 0.77
   5 ?   -0.6   0.0       2.1   7.4e+02      37      58 ..    1734    1755 ..    1722    1766 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 1.4
        TniB  36 pnlllvGdsnnGKtmivekFarl 58 
                 +  llvG    GKt+iv+  ar+
  KKY20099.1 304 KPTLLVGYAGSGKTSIVNDAARK 326
                 5679*************987765 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.06
        TniB  36 pnlllvGdsnnGKtmivekFarl 58 
                 + lllvG++ +GKt+ ++  a++
  KKY20099.1 631 EPLLLVGETGIGKTTAIQYLAKK 653
                 569**************988776 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.079
        TniB   30 pkrkrmpnlllvGdsnnGKtmivekFar 57  
                  + + rm  +ll G++  GKt++ve  a+
  KKY20099.1 1061 AVSMRMFPILLQGPTSSGKTSMVEYLAK 1088
                  34679999***************98776 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.33
        TniB   22 rLeeLleypkrkrmpnlllvGdsnnGKtmivek 54  
                  rL+ L+ ++ ++  + +ll+G++  GKt++++ 
  KKY20099.1 1341 RLAVLIMKAIEHN-EPVLLIGETGAGKTQVFQT 1372
                  5666665555555.668999*********9986 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 2.1
        TniB   37 nlllvGdsnnGKtmivekFarl 58  
                   +ll Gd+ +GKt+++   ar 
  KKY20099.1 1734 PILLEGDPGVGKTTLIAALARA 1755
                  57999**********9887765 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.041        15      23      60 ..     617     656 ..     608     669 .. 0.72
   2 ?    5.8   0.0      0.03        10      30      59 ..    1349    1378 ..    1331    1392 .. 0.80
   3 ?    2.7   0.0      0.28        98      35      58 ..    1733    1756 ..    1716    1765 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.041
                 HHHHHHSTTT...S--EEEE-SSSSSHHHHHHHHHHHHHH CS
    Bac_DnaA  23 alkvaeapgk..kynPlfiygevGlGktHLlkaignevle 60 
                 ++ +   ++   +  Pl++ ge+G+Gkt  ++ +++++ +
  KKY20099.1 617 SRLIETCAAGvqSSEPLLLVGETGIGKTTAIQYLAKKLGK 656
                 555544433223789*************988887776655 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.03
                  TTT.S--EEEE-SSSSSHHHHHHHHHHHHH CS
    Bac_DnaA   30 pgkkynPlfiygevGlGktHLlkaignevl 59  
                  + ++  P+++ ge+G Gkt ++++i++ + 
  KKY20099.1 1349 AIEHNEPVLLIGETGAGKTQVFQTISHMLG 1378
                  445678*******************98765 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.28
                  --EEEE-SSSSSHHHHHHHHHHHH CS
    Bac_DnaA   35 nPlfiygevGlGktHLlkaignev 58  
                   P+++ g+ G+Gkt L+ a++ ++
  KKY20099.1 1733 KPILLEGDPGVGKTTLIAALARAT 1756
                  6******************99765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.2         1   3.6e+02       4      23 ..     635     655 ..     633     663 .. 0.79
   2 ?    6.6   0.0     0.024       8.3       2      38 ..    1069    1116 ..    1068    1140 .. 0.69
   3 !    8.4   0.1    0.0067       2.4       2      24 ..    1735    1758 ..    1734    1763 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 1
      AAA_28   4 itGgestGKTtlleaLaar.g 23 
                 ++G  + GKTt ++ La++ g
  KKY20099.1 635 LVGETGIGKTTAIQYLAKKlG 655
                 678899***********8763 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.024
      AAA_28    2 ivitGgestGKTtlleaLa...........argypvvpEaareileek 38  
                  i + G+ s+GKT+++e La           +++++ ++E+  ++ +++
  KKY20099.1 1069 ILLQGPTSSGKTSMVEYLAkisghkfvrinNHEHTDLQEYLGTYASDE 1116
                  7789***************55544444333334444455555555554 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0067
      AAA_28    2 ivitGgestGKTtlleaLaar.gy 24  
                  i + G ++ GKTtl++aLa+  g+
  KKY20099.1 1735 ILLEGDPGVGKTTLIAALARAtGH 1758
                  678899*************75476 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.91   3.2e+02       6      22 ..     307     323 ..     303     358 .. 0.85
   2 !    9.8   0.1    0.0017       0.6       5     122 ..     633     783 ..     630     789 .. 0.70
   3 ?   -2.4   0.0       9.2   3.2e+03       5      22 ..    1069    1086 ..    1068    1098 .. 0.82
   4 ?    1.0   0.0      0.84     3e+02       5      24 ..    1356    1374 ..    1353    1396 .. 0.84
   5 ?    4.6   0.0     0.068        24       5      22 ..    1735    1752 ..    1732    1767 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.91
      AAA_24   6 liyGpsgiGKTtlakel 22 
                 l++G +g+GKT++++ +
  KKY20099.1 307 LLVGYAGSGKTSIVNDA 323
                 899**********9988 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0017
      AAA_24   5 iliyGpsgiGKTtlakel....gpkplfi.........dtekGlksldadkfpdieswedfldevvel...............aaeladyktlviDtid 75 
                 +l++G+ giGKTt +  l    g+k  +i         d+ +G+k +  + +  ++ +e+f d +++                  ++++y+ lv+   +
  KKY20099.1 633 LLLVGETGIGKTTAIQYLakklGKKMTVInlsqqsessDILGGFKPVTTRSLA-LPMVEEFNDLFDQTfsakrnqkflasishCIKKQNYQRLVV-LWE 729
                 689**********9999989889999999555555555555555554444443.33666666666666777999999999998566666888888.889 PP

      AAA_24  76 eleelclaevirqnekaesked.....kgdgkG..ygelaeefrrllkklqelr 122
                 e+++++ +++ +++ ++ +++        +  G  y  l+++++++  +l++lr
  KKY20099.1 730 EAVKMAENNFGDKDTNGATQTAgkpakRRKIEGtkYEVLQNKWSNFAVQLDSLR 783
                 999999999988888877773333444333334458888888888888887776 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 9.2
      AAA_24    5 iliyGpsgiGKTtlakel 22  
                  il+ Gp  +GKT+++  l
  KKY20099.1 1069 ILLQGPTSSGKTSMVEYL 1086
                  7899*********99877 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.84
      AAA_24    5 iliyGpsgiGKTtlakelgp 24  
                  +l++G+ g+GKT +  ++  
  KKY20099.1 1356 VLLIGETGAGKTQVFQTI-S 1374
                  799*********999887.3 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.068
      AAA_24    5 iliyGpsgiGKTtlakel 22  
                  il+ G++g+GKTtl++ l
  KKY20099.1 1735 ILLEGDPGVGKTTLIAAL 1752
                  7899**********9987 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0       0.4   1.4e+02       3      21 ..     307     325 ..     306     347 .. 0.81
   2 ?    3.9   0.1      0.17        61       2      22 ..     633     653 ..     632     672 .. 0.83
   3 ?   -0.1   0.0         3     1e+03       2      20 ..    1069    1087 ..    1069    1097 .. 0.85
   4 ?    3.0   0.0      0.32   1.1e+02       2      19 ..    1356    1373 ..    1355    1392 .. 0.88
   5 ?    5.3   0.0     0.061        21       2      23 ..    1735    1756 ..    1734    1769 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.4
                 EEESSTTSSHHHHHHCHCT CS
         Roc   3 vlvGdsgvGKtsllkrfve 21 
                 +lvG +g+GKts+++   +
  KKY20099.1 307 LLVGYAGSGKTSIVNDAAR 325
                 69************98765 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.17
                 EEEESSTTSSHHHHHHCHCT- CS
         Roc   2 vvlvGdsgvGKtsllkrfved 22 
                 ++lvG++g+GKt+ ++ + ++
  KKY20099.1 633 LLLVGETGIGKTTAIQYLAKK 653
                 689**********99988765 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 3
                  EEEESSTTSSHHHHHHCHC CS
         Roc    2 vvlvGdsgvGKtsllkrfv 20  
                  ++l G +++GKts+++ + 
  KKY20099.1 1069 ILLQGPTSSGKTSMVEYLA 1087
                  57889*********99776 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.32
                  EEEESSTTSSHHHHHHCH CS
         Roc    2 vvlvGdsgvGKtsllkrf 19  
                  v+l+G++g+GKt  ++ +
  KKY20099.1 1356 VLLIGETGAGKTQVFQTI 1373
                  79***********99876 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.061
                  EEEESSTTSSHHHHHHCHCT-C CS
         Roc    2 vvlvGdsgvGKtsllkrfvedk 23  
                  ++l Gd gvGKt+l+  + + +
  KKY20099.1 1735 ILLEGDPGVGKTTLIAALARAT 1756
                  5778***********9988765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.3      0.59   2.1e+02      34      55 ..     304     325 ..     296     332 .. 0.85
   2 ?    2.2   0.0      0.32   1.1e+02      31      54 ..     628     651 ..     602     657 .. 0.77
   3 ?    2.6   0.0      0.25        87      20      49 ..    1340    1369 ..    1333    1388 .. 0.87
   4 !    8.4   0.0    0.0041       1.4      33      59 ..    1732    1756 ..    1709    1766 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.59
      AAA_25  34 elallaGapgtGKttlaldlal 55 
                 + +ll+G  g+GKt ++ d a 
  KKY20099.1 304 KPTLLVGYAGSGKTSIVNDAAR 325
                 679************9988875 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.32
      AAA_25  31 pagelallaGapgtGKttlaldla 54 
                    e  ll+G +g GKtt+   la
  KKY20099.1 628 QSSEPLLLVGETGIGKTTAIQYLA 651
                 457889************988776 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.25
      AAA_25   20 pprrwlvkgllpagelallaGapgtGKttl 49  
                  +++  l++  +  +e +ll+G +g+GKt +
  KKY20099.1 1340 RRLAVLIMKAIEHNEPVLLIGETGAGKTQV 1369
                  67778999999*****************65 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.0041
      AAA_25   33 gelallaGapgtGKttlaldlalavat 59  
                  ++ +ll G+pg+GKttl   la a  t
  KKY20099.1 1732 DKPILLEGDPGVGKTTLIAALARA--T 1756
                  56799*************988865..3 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.041        14      14      72 ..     630     697 ..     613     729 .. 0.66
   2 ?    0.1   0.0       1.7   6.1e+02      17      31 ..    1069    1083 ..    1060    1278 .. 0.81
   3 ?    7.3   0.0     0.011       3.7       8      32 ..    1347    1371 ..    1342    1380 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.041
                 TCEEEEEESTTSSHHHHHHHHHHHHHHHS..........TTSTS-EEEEEESSHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  14 ggdvlvaaeTGsGKTlaflipvlqivyet..........kgktgpkalivePtreLaeqtlnnlkkfkk 72 
                  + +l+ +eTG GKT+a +  + +   ++          ++++    +  + tr+La  ++++++ +++
  KKY20099.1 630 SEPLLLVGETGIGKTTAIQYLAKKLG-KKmtvinlsqqsESSDILGGFKPVTTRSLALPMVEEFNDLFD 697
                 4678999**********776555333.323566655444333334455556677777777777666665 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.7
                  EEEEESTTSSHHHHH CS
                  xxxxxxxxxxxxxxx RF
        DEAD   17 vlvaaeTGsGKTlaf 31  
                  +l++++T sGKT + 
  KKY20099.1 1069 ILLQGPTSSGKTSMV 1083
                  6899********874 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.011
                  HHHHHTTCEEEEEESTTSSHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD    8 iplilgggdvlvaaeTGsGKTlafl 32  
                  +++i +++ vl+ +eTG+GKT +f+
  KKY20099.1 1347 MKAIEHNEPVLLIGETGAGKTQVFQ 1371
                  567778999**************97 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1       0.5   1.8e+02       3      23 ..     307     327 ..     306     346 .. 0.78
   2 ?    2.6   0.1      0.39   1.4e+02       3      22 ..     634     653 ..     633     684 .. 0.81
   3 ?   -0.2   0.0       2.9     1e+03       2      32 ..    1069    1103 ..    1068    1121 .. 0.73
   4 ?    1.4   0.0      0.92   3.2e+02       2      26 ..    1356    1384 ..    1355    1402 .. 0.75
   5 ?    6.5   0.0     0.025       8.8       3      22 ..    1736    1755 ..    1734    1769 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.5
                 EEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgek 23 
                 ++vG+  +GK++++n   ++ 
  KKY20099.1 307 LLVGYAGSGKTSIVNDAARKL 327
                 58*************998873 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.39
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 ++vG +  GK+t i+ l ++
  KKY20099.1 634 LLVGETGIGKTTAIQYLAKK 653
                 68***************986 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 2.9
                  EEEEESTTSSHHHHHHHHHT....STEEESSSTTS CS
    MMR_HSR1    2 vaivGrpNvGKStLinaltg....ekaivsdkpgt 32  
                  +++ G + +GK++++  l +    + ++++++  t
  KKY20099.1 1069 ILLQGPTSSGKTSMVEYLAKisghKFVRINNHEHT 1103
                  57889************987433234566666655 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.92
                  EEEEESTTSSHHHHHHHHHT...S.TEEE CS
    MMR_HSR1    2 vaivGrpNvGKStLinaltg...e.kaiv 26  
                  v+++G + +GK+ ++++++    +  +iv
  KKY20099.1 1356 VLLIGETGAGKTQVFQTISHmlgKsLSIV 1384
                  789************99985222224455 PP

  == domain 5  score: 6.5 bits;  conditional E-value: 0.025
                  EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1    3 aivGrpNvGKStLinaltge 22  
                  ++ G p vGK+tLi al ++
  KKY20099.1 1736 LLEGDPGVGKTTLIAALARA 1755
                  6779*************986 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       2.6   9.2e+02       2      18 ..     304     320 ..     303     326 .. 0.85
   2 ?    3.7   0.1      0.13        47       4      23 ..     633     652 ..     630     671 .. 0.84
   3 ?    0.3   0.0       1.5   5.2e+02       4      22 ..    1069    1087 ..    1066    1102 .. 0.86
   4 ?    4.8   0.1      0.06        21       4      23 ..    1356    1375 ..    1353    1383 .. 0.88
   5 ?    1.6   0.0      0.58     2e+02       2      22 ..    1733    1753 ..    1732    1768 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 2.6
   PduV-EutP   2 kkilliGkvgsGKttLt 18 
                 k  ll+G  gsGKt++ 
  KKY20099.1 304 KPTLLVGYAGSGKTSIV 320
                 5679**********986 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.13
   PduV-EutP   4 illiGkvgsGKttLtqalkg 23 
                 +ll+G++g GKtt  q l +
  KKY20099.1 633 LLLVGETGIGKTTAIQYLAK 652
                 69***********9999976 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 1.5
   PduV-EutP    4 illiGkvgsGKttLtqalk 22  
                  ill G++ sGKt++ + l 
  KKY20099.1 1069 ILLQGPTSSGKTSMVEYLA 1087
                  899**********998775 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.06
   PduV-EutP    4 illiGkvgsGKttLtqalkg 23  
                  +lliG++g+GKt + q++++
  KKY20099.1 1356 VLLIGETGAGKTQVFQTISH 1375
                  89*************99875 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.58
   PduV-EutP    2 kkilliGkvgsGKttLtqalk 22  
                  k ill G  g+GKttL  al 
  KKY20099.1 1733 KPILLEGDPGVGKTTLIAALA 1753
                  679999**********99986 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.9   6.7e+02       4      24 ..     308     328 ..     306     383 .. 0.78
   2 ?    5.8   0.1     0.033        12       3      26 ..     634     657 ..     632     669 .. 0.86
   3 ?    1.4   0.1      0.76   2.7e+02       2      26 ..    1356    1380 ..    1355    1389 .. 0.86
   4 ?    6.8   0.0     0.016       5.7       2      22 ..    1735    1755 ..    1734    1763 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.9
                 EE--TTSSHHHHHHHHHHHH. CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellk 24 
                 + G  G+GKt +v+ ++++l 
  KKY20099.1 308 LVGYAGSGKTSIVNDAARKLG 328
                 67999************9993 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.033
                 EEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlellkss 26 
                 ++ G+ G+GKtT ++ ++++l ++
  KKY20099.1 634 LLVGETGIGKTTAIQYLAKKLGKK 657
                 688*****************9554 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.76
                  EEEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1    2 vfiTGppGvGKtTlvkkvlellkss 26  
                  v++ G+ G GKt +++ ++++l +s
  KKY20099.1 1356 VLLIGETGAGKTQVFQTISHMLGKS 1380
                  6788***************999654 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.016
                  EEEE--TTSSHHHHHHHHHHH CS
    NTPase_1    2 vfiTGppGvGKtTlvkkvlel 22  
                  +++ G pGvGKtTl+  ++++
  KKY20099.1 1735 ILLEGDPGVGKTTLIAALARA 1755
                  6789***********988775 PP

>> AAA_8  P-loop containing dynein motor region D4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.12        42      27      57 ..     306     336 ..     301     347 .. 0.79
   2 ?    6.3   0.0     0.015       5.3      12      66 ..    1054    1108 ..    1046    1120 .. 0.92
   3 ?   -1.3   0.0       3.1   1.1e+03      27      61 ..    1356    1390 ..    1346    1412 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.12
       AAA_8  27 aLlvGvgGsGrqsltkLAafiaelelfqiev 57 
                 +LlvG +GsG+ s+++ Aa  ++ +   i++
  KKY20099.1 306 TLLVGYAGSGKTSIVNDAARKLGAATSMITL 336
                 69************99988777766665555 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.015
       AAA_8   12 hlarilRvlrqprghaLlvGvgGsGrqsltkLAafiaelelfqievtkkykekef 66  
                   l+ ++R +++    +Ll G   sG+ s+++  a i+++++++i+ +++ + +e+
  KKY20099.1 1054 NLLNLARAVSMRMFPILLQGPTSSGKTSMVEYLAKISGHKFVRINNHEHTDLQEY 1108
                  5778899999***********************************9999998886 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 3.1
       AAA_8   27 aLlvGvgGsGrqsltkLAafiaelelfqievtkky 61  
                  +Ll+G  G G+ ++ +  +++++ +l  ++ + + 
  KKY20099.1 1356 VLLIGETGAGKTQVFQTISHMLGKSLSIVNAHVNL 1390
                  79***********9999999998887766666555 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.21        73       4      34 ..     309     333 ..     306     354 .. 0.70
   2 ?    0.0   0.1       1.7   5.9e+02       7      23 ..     639     656 ..     634     680 .. 0.77
   3 ?    5.2   0.0     0.043        15       2      28 ..    1736    1763 ..    1735    1824 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.21
  Viral_helicase1   4 hGvpGcGKStlirkllrtsliltvnrptael 34 
                       G +G+GK++++ +++r+         ++ +
       KKY20099.1 309 VGYAGSGKTSIVNDAARK------LGAATSM 333
                      599*************99......2233333 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 1.7
  Viral_helicase1   7 pGcGKStlirkllrts.l 23 
                       G GK+t+i+ l+++   
       KKY20099.1 639 TGIGKTTAIQYLAKKLgK 656
                      688**********99442 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.043
  Viral_helicase1    2 vvhGvpGcGKStlirkllrts.liltvn 28  
                       +  G pG GK+tli  l+r   ++lt +
       KKY20099.1 1736 LLEGDPGVGKTTLIAALARATgHSLTRI 1763
                       56788**************977555543 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.015       5.3       3      36 ..     306     341 ..     304     391 .. 0.78
   2 ?    2.9   0.1      0.21        73       4      33 ..     634     662 ..     632     673 .. 0.81
   3 ?   -1.2   0.0       3.8   1.3e+03       4      23 ..    1070    1089 ..    1068    1111 .. 0.80
   4 ?   -1.1   0.1       3.5   1.2e+03       4      21 ..    1357    1374 ..    1355    1389 .. 0.75
   5 ?    3.6   0.0      0.13        44       4      23 ..    1736    1755 ..    1734    1769 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.015
                 EEEEESTTCCHHHHHHHHH..CT--SS-EEEEESS- CS
        cobW   3 tvltGflGsGKTtLlnhll..enraglklavivNef 36 
                 t+l+G+ GsGKT+++n       +a   + + +Ne+
  KKY20099.1 306 TLLVGYAGSGKTSIVNDAArkLGAATSMITLHLNEQ 341
                 789*************99843233334444444555 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.21
                 EEEESTTCCHHHHHHHHHCT--SS-EEEEE CS
        cobW   4 vltGflGsGKTtLlnhllenraglklaviv 33 
                 +l+G  G GKTt ++ l  ++ g+k+ vi 
  KKY20099.1 634 LLVGETGIGKTTAIQYLA-KKLGKKMTVIN 662
                 6899**********9887.55899999995 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 3.8
                  EEEESTTCCHHHHHHHHHCT CS
        cobW    4 vltGflGsGKTtLlnhllen 23  
                  +l G+  sGKT++++ l + 
  KKY20099.1 1070 LLQGPTSSGKTSMVEYLAKI 1089
                  6899999*******998754 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 3.5
                  EEEESTTCCHHHHHHHHH CS
        cobW    4 vltGflGsGKTtLlnhll 21  
                  +l G  G+GKT + +++ 
  KKY20099.1 1357 LLIGETGAGKTQVFQTIS 1374
                  578999******998775 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.13
                  EEEESTTCCHHHHHHHHHCT CS
        cobW    4 vltGflGsGKTtLlnhllen 23  
                  +l G +G GKTtL+ +l + 
  KKY20099.1 1736 LLEGDPGVGKTTLIAALARA 1755
                  68899*********999855 PP

>> AAA_9  ATP-binding dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0039       1.4      62     125 ..     364     425 ..     329     475 .. 0.85
   2 ?   -2.8   0.0       8.1   2.8e+03      63      96 ..     802     835 ..     787     866 .. 0.71
   3 ?   -1.9   0.0       4.2   1.5e+03      63     121 ..    1127    1184 ..    1117    1189 .. 0.79
   4 ?   -1.9   0.0       4.2   1.5e+03      66     120 ..    1799    1852 ..    1796    1903 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0039
                 HHHHHHHTTSEEEESTT.SSHHSTTHHHHTTCCEE..CEEEESSSE.EE--SSCEEEEEESSTT CS
       AAA_9  62 tLenairfGkplliedvgeeldpiLepvLekeiikkgrkliklgdkeieysenFrLylttklsn 125
                  L +a+r G+ +lied++   + ++  +L   +i++g+ li   ++ i   + FrL  t + ++
  KKY20099.1 364 ILTKAVREGRWVLIEDLDRAPQEVIGLLLP--LIERGELLIPNRNEHIRAAQGFRLLATIRSQT 425
                 599**************9999999998887..77889*******************99887665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 8.1
                 HHHHHHTTSEEEESTT.SSHHSTTHHHHTTCCEE CS
       AAA_9  63 LenairfGkplliedvgeeldpiLepvLekeiik 96 
                 + +a+r+G+ +l+++++     +Le++L+   + 
  KKY20099.1 802 VIQALRNGDWVLLDEINLAAPDTLESILSLLNHG 835
                 56899***********999999999999855444 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 4.2
                  HHHHHHTTSEEEESTT.SSHHSTTHHHHTTCCEE..CEEEESSSE.EE--SSCEEEEEE CS
       AAA_9   63 LenairfGkplliedvgeeldpiLepvLekeiikkgrkliklgdkeieysenFrLyltt 121 
                  L  a+r G+ +++++++     +Le  L++ +  +++ +i  +++++  ++nF L+ t 
  KKY20099.1 1127 LVRALREGHWVVLDELNLAPTDVLE-ALNRLLDDNRELFIPETQETVRPHPNFMLFATQ 1184
                  6789999999999999655555555.466666565689999999***********9875 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 4.2
                  HHHTTSEEEESTT.SSHHSTTHHHHTTCCEE..CEEEESSSE.EE--SSCEEEEE CS
       AAA_9   66 airfGkplliedvgeeldpiLepvLekeiikkgrkliklgdkeieysenFrLylt 120 
                  a++ G+ +l+++++   + +Le + +  + ++++ +i+  d++   +++F L+  
  KKY20099.1 1799 AMQAGEWVLLDEMNLASQSVLEGL-NACLDHRKQVYITELDQTFRRHPKFVLFAA 1852
                  789999999999977777777654.444434346666666899999999999865 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0019      0.68       4      38 ..    1069    1103 ..    1067    1166 .. 0.74
   2 ?   -1.4   0.0       5.1   1.8e+03      74     113 ..    1473    1512 ..    1435    1514 .. 0.82
   3 ?   -1.0   0.0       3.9   1.4e+03       4      26 ..    1735    1757 ..    1733    1774 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0019
                  EEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHH CS
         CPT    4 ilLnGgsssGKsslaralqevldepwlhlgvDafv 38  
                  ilL+G +ssGK+s+++ l +++ + ++ ++  + +
  KKY20099.1 1069 ILLQGPTSSGKTSMVEYLAKISGHKFVRINNHEHT 1103
                  89********************9999988765544 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 5.1
                  HHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEE CS
         CPT   74 eavaamaraGnnvivDdvilekewlvdllrrllsgldvll 113 
                   ++ +  +aG + ++D++ l  + + ++l+++l+++++++
  KKY20099.1 1473 GSLVSAMKAGDHFLLDEIALADDSVLERLNSVLEPTRTIF 1512
                  455666789*************************999877 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 3.9
                  EEEEE-TTSSHHHHHHHHHHHSS CS
         CPT    4 ilLnGgsssGKsslaralqevld 26  
                  ilL+G +  GK++l  al   + 
  KKY20099.1 1735 ILLEGDPGVGKTTLIAALARATG 1757
                  9**************99987665 PP

>> DUF1415  Protein of unknown function (DUF1415)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0013      0.45      30     105 ..    2601    2676 ..    2596    2689 .. 0.92
   2 ?   -0.9   0.0       3.4   1.2e+03      71     137 ..    3444    3507 ..    3420    3510 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0013
     DUF1415   30 kqiryvvseaekeeklleelleelelleeekeeeieTtLlilpevledfedyldlldlaealleelelegvlqvas 105 
                  k++++++s+  ++ +ll+e+++++  le++ ++e++   +i+++ +e++ ++ldl +l+++ + +++l++++ + +
  KKY20099.1 2601 KSMNLQLSSGCNVTDLLKEVEQKIISLEHSVDSEMSPRSIIFQSEFETLAQFLDLGELCDNDIVTESLQDIIAILA 2676
                  677888899999**********************************************************998865 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 3.4
     DUF1415   71 lpevledfedyldlldla.ea.ll.eelelegvlqvasfHpdyqFegeeaddaenytnRspypilhllRe 137 
                  l++vle+fe++ d ++ + e+ ++  e+++++++q+as+      ++++  +  + ++Rs + ++ ++R+
  KKY20099.1 3444 LENVLEHFERFRDQVNNIvEDgTVkFENNIKEQIQLASW------KDTNVAALRDSARRSHHRLFKIVRK 3507
                  567888899998877644233144357899999999985......5666677777777777777777775 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.48   1.7e+02       6      68 ..     637     714 ..     633     905 .. 0.84
   2 ?    7.3   0.0     0.013       4.5       7      34 ..    1740    1767 ..    1735    1925 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.48
                 SSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH..................CCHCCCHHHHHHCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxx RF
        CbiA   6 tkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep..................dlkrllellealgk 68 
                 +  G GKTt    La+ l +   +  ++ +  q++++ il g ++   +                  ++kr  ++l+++++
  KKY20099.1 637 GETGIGKTTAIQYLAKKLGK---KMTVINLSQQSESSDILGGFKPVTTRslalpmveefndlfdqtfSAKRNQKFLASISH 714
                 56899*****9999997766...9999999999999998777777666666777666677777777755554444444444 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.013
                  STTSSHHHHHHHHHHHHHHTT--EEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA    7 kGGvGKTtlaanLaralarrglrVllvD 34  
                    GvGKTtl a+Lara      r+ l D
  KKY20099.1 1740 DPGVGKTTLIAALARATGHSLTRINLSD 1767
                  559************9887777776666 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.71   2.5e+02      12      40 ..     296     324 ..     285     335 .. 0.80
   2 ?    0.4   0.0       1.1   3.8e+02      20     101 ..     631     710 ..     621     723 .. 0.68
   3 ?    4.2   0.0     0.073        26      12      35 ..    1346    1369 ..    1342    1426 .. 0.85
   4 ?   -1.0   0.0       2.8     1e+03      11      40 ..    1724    1753 ..    1718    1762 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.71
                 HHHHHHH-SEEEEE--TTSSTTHHHHHHH CS
        PhoH  12 ylealkkndivfaiGpaGtGKtylavala 40 
                 +++al + + +  +G aG+GKt +   +a
  KKY20099.1 296 LASALLDTKPTLLVGYAGSGKTSIVNDAA 324
                 5677888889999*********9866555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.1
                 SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEE..EEEE-S--TT---.-SS---------TTTHHHHHHHTTTS-TTCHHHHHH CS
        PhoH  20 divfaiGpaGtGKtylavalavealkkkkvkri..iltrpaveageel.GflpgdleekvdpylrplydaLkdllgaekveklle 101
                 + +  +G++G GKt      a+++l kk  k++  i +  + e+ + l Gf p +++    p+++ + d  +++++a++ +k+l 
  KKY20099.1 631 EPLLLVGETGIGKTT-----AIQYLAKKLGKKMtvINLSQQSESSDILgGFKPVTTRSLALPMVEEFNDLFDQTFSAKRNQKFLA 710
                 5567899******95.....55555554444330033334444455553699999999999999999999999998888888765 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.073
                  HHHHHHH-SEEEEE--TTSSTTHH CS
        PhoH   12 ylealkkndivfaiGpaGtGKtyl 35  
                  +++a+++n+ v  iG++G+GKt +
  KKY20099.1 1346 IMKAIEHNEPVLLIGETGAGKTQV 1369
                  6899******************65 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 2.8
                  HHHHHHHH-SEEEEE--TTSSTTHHHHHHH CS
        PhoH   11 eylealkkndivfaiGpaGtGKtylavala 40  
                  ++++a++  + +   G+ G GKt l  ala
  KKY20099.1 1724 RVVRAMQVDKPILLEGDPGVGKTTLIAALA 1753
                  67888888888999*********9977776 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.078        27      12      58 ..     640     683 ..     637     735 .. 0.70
   2 ?   -0.3   0.0       2.5   8.9e+02      12      29 ..    1742    1759 ..    1739    1768 .. 0.82
   3 ?    3.1   0.1      0.22        78      81     125 ..    2774    2818 ..    2738    2821 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.078
      AAA_31  12 GvGKTTtsvnlaaalaklgkkvLlvDlDpQanattglgiekneiekt 58 
                 G+GKTT    la+   klgkk+ +++l  Q+ ++  lg  k  ++++
  KKY20099.1 640 GIGKTTAIQYLAK---KLGKKMTVINLSQQSESSDILGGFKPVTTRS 683
                 99****8777775...6799***********9999776544444444 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 2.5
      AAA_31   12 GvGKTTtsvnlaaalakl 29  
                  GvGKTT   +la a  ++
  KKY20099.1 1742 GVGKTTLIAALARATGHS 1759
                  9**********9987665 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.22
      AAA_31   81 ldlipssidLaeaeielvelekkeeilkellekvkdeYDyiiiDc 125 
                  ld++  + dL + ei  +  +++   l ++++k kd+YD+ + D+
  KKY20099.1 2774 LDILSCHEDLLAPEIAATVSQREGLNLANAISKSKDSYDILLPDV 2818
                  59999999**9999999888888999**************99886 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.64   2.2e+02       5      26 ..     637     658 ..     633     689 .. 0.89
   2 ?    4.5   0.0     0.081        28       1      34 [.    1069    1102 ..    1069    1122 .. 0.79
   3 ?    3.6   0.0      0.15        52       1      24 [.    1735    1758 ..    1735    1770 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.64
                 ESTTSSHHHHHHHHHCCSTCEE CS
         dNK   5 GnIgaGKstlvklLskklgvkv 26 
                 G  g GK+t ++ L+kklg k+
  KKY20099.1 637 GETGIGKTTAIQYLAKKLGKKM 658
                 899***************9655 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.081
                  EEEEESTTSSHHHHHHHHHCCSTCEEEE-HHHHC CS
         dNK    1 ivveGnIgaGKstlvklLskklgvkvfeEpvdkw 34  
                  i ++G+ ++GK+++v+ L+k  g k+++  + + 
  KKY20099.1 1069 ILLQGPTSSGKTSMVEYLAKISGHKFVRINNHEH 1102
                  6789*****************9988876555444 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.15
                  EEEEESTTSSHHHHHHHHHCCSTC CS
         dNK    1 ivveGnIgaGKstlvklLskklgv 24  
                  i +eG  g+GK+tl+  L++++g 
  KKY20099.1 1735 ILLEGDPGVGKTTLIAALARATGH 1758
                  6789***************99875 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.51   1.8e+02       2      17 ..     309     324 ..     308     338 .. 0.82
   2 ?    3.1   0.1      0.19        67       2      32 ..     636     663 ..     635     669 .. 0.86
   3 ?   -0.6   0.0       2.6     9e+02       3      19 ..    1073    1089 ..    1071    1097 .. 0.87
   4 ?    0.1   0.1       1.6   5.6e+02       2      31 ..    1359    1385 ..    1358    1394 .. 0.78
   5 ?    1.9   0.0      0.45   1.6e+02       3      30 ..    1739    1763 ..    1737    1769 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.51
  ATP_bind_1   2 vGpaGsGKttfvgals 17 
                 vG aGsGKt++v+  +
  KKY20099.1 309 VGYAGSGKTSIVNDAA 324
                 8**********98765 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.19
  ATP_bind_1   2 vGpaGsGKttfvgalseilelrgrsvavvNL 32 
                 vG  G GKtt ++ l++ l ++   + v+NL
  KKY20099.1 636 VGETGIGKTTAIQYLAKKLGKK---MTVINL 663
                 899*********9998877655...*****9 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 2.6
  ATP_bind_1    3 GpaGsGKttfvgalsei 19  
                  Gp +sGKt++v+ l++i
  KKY20099.1 1073 GPTSSGKTSMVEYLAKI 1089
                  99*********999887 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 1.6
  ATP_bind_1    2 vGpaGsGKttfvgalseilelrgrsvavvN 31  
                  +G  G+GKt   +++s +l ++   + +vN
  KKY20099.1 1359 IGETGAGKTQVFQTISHMLGKS---LSIVN 1385
                  899***********99998766...44444 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.45
  ATP_bind_1    3 GpaGsGKttfvgalseilelrgrsvavv 30  
                  G +G+GKtt++ al+  +  +   +  +
  KKY20099.1 1739 GDPGVGKTTLIAALARATGHS---LTRI 1763
                  889*********998765444...5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4902 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1253  (0.0698868); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                       128  (0.00713927); expected 17.9 (0.001)
Passed Fwd filter:                        63  (0.00351386); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              51  [number of targets reported over threshold]
# CPU time: 2.51u 0.39s 00:00:02.90 Elapsed: 00:00:00.71
# Mc/sec: 20811.48
//
Query:       KKY20100.1  [L=925]
Description: putative voltage-gated chloride [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-84  283.5  28.9    2.5e-84  283.5  28.9    1.6  2  Voltage_CLC  Voltage gated chloride channel
     0.0035   17.8   0.0       0.13   12.7   0.0    2.5  2  CBS          CBS domain


Domain annotation for each model (and alignments):
>> Voltage_CLC  Voltage gated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.3      0.25   2.2e+03     165     179 ..     198     212 ..     182     221 .. 0.60
   2 !  283.5  28.9   2.8e-88   2.5e-84       2     353 ..     288     676 ..     287     677 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.25
                  HHHHHHHHHHHHHHH CS
  Voltage_CLC 165 ilfvllGilgGllga 179
                  +++vl Gi++G+l+a
   KKY20100.1 198 MVLVLTGIAVGILAA 212
                  334555555555555 PP

  == domain 2  score: 283.5 bits;  conditional E-value: 2.8e-88
                  HHHHHHHCCCCC-GGGSC-SHHHHHHHCTTSS--..-HHHHHHHHHHHHHHHHCTT-S-BTHHHHHHHHHHHHHHHHHH.TT.--SHHHHH.HHHHHH CS
  Voltage_CLC   2 ggllagllvklvapeaagsGipevkaalngvkgp..lslrvllvkflasvltvgsGlslGreGplvqiGAavgsglsrl.lklsrndrdrr.lvaaGa 95 
                  ++++a++lvk +a +a+ sGipe+k++l g+ ++  +  ++l++k l+++l+v+sGl +G+eGpl+++++++++++ +   +ls+n++++r +++a+a
   KKY20100.1 288 FAAAASILVKQYAFYAKHSGIPEIKTVLGGFVIRhfMGAWTLIIKSLGLCLSVASGLWAGKEGPLIHVACCCANLIMKPfDSLSSNEARKReILSAAA 385
                  7899************************************************************************9654777899999999****** PP

                  HHHHHHHHT-HHHHHHHHCTTTSTSS--TTHHHHHHHHHHHHHHHHHHCTTS-S....-.T---...--GGGHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Voltage_CLC  96 AAGiAAaFnaPlgGvlfalEevsrefslrallpvfvasvvaalvlrlllgeepa....fgeveslfalsllelilfvllGilgGllgalfvrlllkve 189
                  AAGi++aF++P+gGvlf+ E++s +f  ++++ +fv+++vaa++l++++  ++     ++ v   + ++ +eli+fv+lG+lgGl+g+lf++ ++ v+
   KKY20100.1 386 AAGISVAFGSPIGGVLFSSEQLSYYFPDKTMWQSFVCAMVAAVTLQFMNPFRTGkivlYE-VRYSSGWHDFELIPFVFLGVLGGLYGGLFIKANMLVA 482
                  ***********************99999********************666644555443.666568******************************* PP

                  HHHHCHH.CHHHHHHHHHHHHHHHHHHHCCCSCC.CSSSSCCHHHHHCTT-S-.................HHHHHH...HHHHHHHHHHHHHCTT-CS CS
  Voltage_CLC 190 rlfrkle.klkikkrlepalvgllvgllglllpasvlgggyeliasllegstl.................llsllllllllllkllataltlgsgvpg 269
                  +++++ +  + +++++e+++++++ +++ ++    +     el+ +l+++++                  +  ++lll +  l  l++a+t+g+ +p+
   KKY20100.1 483 KFRKSSKnLFYKSPVVEVLVIAFASAVINFPNIF-MRAQLSELVYNLFAECAAlgtndpytlcktttagnISIFTLLLSASALGSLLAAITFGLMLPA 579
                  *999998544444888*************99855.333444455555555444555566777777777878888999999****************** PP

                  BSHHHHHHHHHHHHHHHHHHHHHH-C............TSSC....HHHHHHCCTHHHHHCCS-HHHHHHHHHHCC--GCCHHHHHHHHHHHHHHHC CS
  Voltage_CLC 270 GifaPsLviGAalGrlvglvlalllp............gaass.dpgafalvGmaaflagvtrapltaiviviEltgdlelllplmlavliAkavad 353
                  Gi++PsL+iGA++Gr++g +++ll               + ++ +pg++a+vG+a+ lagvtr++++++vi++Eltg+l+++lp+m+av+++k+++d
   KKY20100.1 580 GIILPSLAIGALYGRALGIFMQLLRDlhpsslffsacePDIQCvTPGTYAIVGAASALAGVTRMTVSIVVIMFELTGALTYVLPIMIAVMLSKWIGD 676
                  *********************99944667888899999778889**************************************************987 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.028   2.5e+02       3      47 ..     711     763 ..     709     772 .. 0.76
   2 !   12.7   0.0   1.5e-05      0.13       5      51 ..     808     853 ..     801     853 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.028
                 HHSBS..SCEEEETT....SBHHHHHHHHHHHT.SSEEEEE..ETTTBEEEEEE CS
         CBS   3 dimtr..dvvtvppd....ttleealelmrekg.vsrlPVV..dedgklvGivt 47 
                  imtr  d+++++ +     t++ +l  + +++ ++++PV+  + d  l+G++ 
  KKY20100.1 711 NIMTRyeDLICLSASprtpHTISSLLTYL-STHpYRGYPVIssPLDPILLGYIP 763
                 67777778888888888889999999999.5556******96655567777775 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.5e-05
                 SBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHH CS
         CBS   5 mtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDl 51 
                 m   ++t++ +++ + a +++ + gv+ l  V e g+l G+vt++D+
  KKY20100.1 808 MDQTPITLNANASFSLAKDMFQRLGVRWLAFV-ERGRLRGLVTKKDV 853
                 566689***************8888****889.8***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (925 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.53
# Mc/sec: 5213.21
//
Query:       KKY20101.1  [L=856]
Description: putative von willebrand and ring finger domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-25   89.3   0.0    3.7e-25   88.6   0.0    1.4  1  PH_10          Pleckstrin homology domain
    7.8e-14   52.3   0.0    1.2e-13   51.6   0.0    1.3  1  VWA            von Willebrand factor type A domain
    2.3e-09   37.3   0.2    1.8e-08   34.5   0.1    2.3  2  VWA_3          von Willebrand factor type A domain


Domain annotation for each model (and alignments):
>> PH_10  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.0   6.2e-29   3.7e-25       2     122 ..     119     227 ..     118     228 .. 0.88

  Alignments for each domain:
  == domain 1  score: 88.6 bits;  conditional E-value: 6.2e-29
       PH_10   2 kfGeLllhdtltVkkdsdsereyevyLFekillcvkevkeekkkksksssllkkkssssskkkktklqLKGrilis.nvtevtssskpgsyslqiswkg 99 
                 +fG+L+lh+t++V+kd++s++e+e+yLF ++l+cvke     kk  +   l+         +k ++++LKG+ili+ +++ v+  s+p++ +l+++++ 
  KKY20101.1 119 RFGKLRLHGTVRVGKDRQSWQELECYLFGEMLICVKE-----KKGAQPVFLNGDP-----MRKLARCTLKGSILIRkHLRAVE--STPDEPILTLNLS- 204
                 8************************************.....5555444444443.....599*************8888888..699999******9. PP

       PH_10 100 dkelesftlrfkneeqlkkWesa 122
                  +el++f++ f++++ql+ W++a
  KKY20101.1 205 VNELPCFHMFFQSRNQLELWKRA 227
                 555*****************986 PP

>> VWA  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   2.1e-17   1.2e-13       1     170 [.     306     472 ..     306     476 .. 0.89

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 2.1e-17
                 EEEEEEE-STTSCHHHHHHHHHHHHHHHHHHTBTTTTEEEEEEEESSS..EEEEEETTSHC..HHHHHHHHHHTGSGGGGSSC-HHHHHHHHHHHHHHH CS
         VWA   1 DivfvlDgSgsmgeenfekvkefikklveklevgpegtrvglvqfsse..vktefslndys..skeellsalnnlkysgggttntgkalkyaleklfks 95 
                 Div+v+ +S+sm++ +++  ++++k lv +l    e++r+glv+f+s+    + + ++++     ++ l++++ + +++   + + ++ + a++ l+++
  KKY20101.1 306 DIVVVIPVSSSMQGLKINLLRDALKFLVANLG---ERDRMGLVTFGSSggGVPLVGMTTKAwpGWNKTLNSIRPVGQKSLRAD-VVEGANVAMDLLMQR 400
                 9*******************************...************999666677777665577888999999766666666.99************* PP

                 HGTSSTTSEEEEEEEESS--CS.SHTHHHHHHHHGCTEEEEEEEESSSHHHHHHHHHSSSSCHHCEEEESSHHHHH CS
         VWA  96 sagaRenakkviilltdGksnd.gdpkeaaneakeqgikvfavGvgnadekelLnkiasepgeghvftvtdfeele 170
                 +++   n  + i+l++d  ++d ++++ ++++a ++++ ++++G g  ++ + + ++++ ++   + +v+d+  l+
  KKY20101.1 401 KSN---NPISTILLISDSSTSDaDSVDFVVQRAEAAKVAIHSFGLGLTHKPDTMIEMSTRTK-ASYLYVKDWMMLR 472
                 ***...999********9999966****************************9****99999.9999999998665 PP

>> VWA_3  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.1     3e-12   1.8e-08       2     150 ..     306     459 ..     305     462 .. 0.72
   2 ?   -2.5   0.0      0.71   4.2e+03      48      76 ..     787     815 ..     784     817 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 3e-12
       VWA_3   2 evvivvDvsssmsaen.klvkdaLsvalrqLptndkiavllfgt.........kprplfpgsravsaaelqealqkikelelslgasnlegaLkealr. 89 
                 ++v+v+ vsssm++ + +l++daL++++  L ++d++ ++ fg+          + + +pg+         ++l +i     ++   ++   ++ a++ 
  KKY20101.1 306 DIVVVIPVSSSMQGLKiNLLRDALKFLVANLGERDRMGLVTFGSsgggvplvgMTTKAWPGW--------NKTLNSIRPVGQKSLRADVVEGANVAMDl 396
                 89*************9****************************443333222222333333........34444444433333333444444444433 PP

       VWA_3  90 ..qpakpgevrsvilltDgssaqgeervsdlisrar.ekirfhalglgsslsaamlqaLAeasg 150
                   q++++  +++++l++D+s ++ +++v   ++ra  +k+ +h++glg +++++ + +++ +++
  KKY20101.1 397 lmQRKSNNPISTILLISDSS-TSDADSVDFVVQRAEaAKVAIHSFGLGLTHKPDTMIEMSTRTK 459
                 336689999*********99.777777777788766599**************99999988875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.71
       VWA_3  48 plfpgsravsaaelqealqkikelelslg 76 
                 +++ + ++ s ++++++lq+i  ++ ++g
  KKY20101.1 787 EWINHPAVFSRDSRKAVLQAIGVISSQRG 815
                 588999999************99888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (856 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 5991.03
//
Query:       KKY20102.1  [L=312]
Description: putative pyrroline-5-carboxylate reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-34  116.3   0.9    1.2e-33  115.5   0.9    1.4  1  P5CR_dimer     Pyrroline-5-carboxylate reductase dimerisation
    6.2e-12   46.0   0.6    1.5e-09   38.3   0.2    3.5  3  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> P5CR_dimer  Pyrroline-5-carboxylate reductase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   0.9   1.3e-37   1.2e-33       2      97 ..     198     294 ..     197     298 .. 0.97

  Alignments for each domain:
  == domain 1  score: 115.5 bits;  conditional E-value: 1.3e-37
                 CHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHCHS.HHHHHHHH--TTSHHHHHHHHHHHTTHHHHHHHHHHHHH CS
  P5CR_dimer   2 kqldavtalsGsgpAyvflliealadagvklGlsreeArelaaqtvaGaaklllese.paelrdkvtspgGtTiaglkeleegglraavieaveaaa 97 
                 +++d++tal+GsgpA+++l++e+lad++v++Gl+r+eA+ +aaqt++Gaa+l+l++e pa +r+kv++pgG+Ti gl +leegg+r+ v +av++a+
  KKY20102.1 198 NLMDVCTALCGSGPAFCALVLESLADGAVAMGLPRKEANLMAAQTMKGAASLVLNGEhPAIVREKVSTPGGCTIGGLLVLEEGGVRGQVSRAVREAT 294
                 58**************************************************998888************************************997 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.2   1.7e-13   1.5e-09       3      97 .]       2     118 ..       1     118 [. 0.82
   2 ?   -0.3   0.0      0.18   1.6e+03      49      74 ..     147     172 ..     125     179 .. 0.77
   3 ?   -1.7   0.0      0.51   4.6e+03      12      43 ..     219     250 ..     214     264 .. 0.68

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 1.7e-13
                    EEETTSHHHHHHHHHHH....HTTS............-GGCEEEEEESSCCCHHHHHHHHC......-EEECECHHHHHHH-SEEEE-S-HHHHHH CS
  F420_oxidored   3 giiGaGnmgealasgll....aaga............qpheivvansrnpekaeelaeelg......vkvtavdneeaaeeadvvvlavkpedvee 76 
                    +++G+G +g a++sg+l    ++++            +p++++ a+ r+p++a  ++++l       vkv + +n ea++++ +++l +kp++++e
     KKY20102.1   2 CFLGCGTLGTAILSGILdslsNNDTsassdsplppsnHPKNFI-ACVRSPSSASRIKSALPqsathlVKVLQNSNLEAIQSSSIILLGCKPYMASE 96 
                    5778888887777776411112333445555666665678899.**************************************************** PP

                    HHHHC.GHHHHTTSEEEEESSS CS
  F420_oxidored  77 vlsel.akdalkgklvisvlag 97 
                    +ls   +++al+gkl+is+lag
     KKY20102.1  97 ILSTPgTREALSGKLLISILAG 118
                    **987799************97 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.18
                    EEECECHHHHHHH-SEEEE-S-HHHH CS
  F420_oxidored  49 kvtavdneeaaeeadvvvlavkpedv 74 
                     v a++n  a+ +  + v++ +p  +
     KKY20102.1 147 IVRAMPNTAAVHRESMTVISTPPPTL 172
                    56778899999999999999999865 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.51
                    HHHHHHHHHTTS..-GGCEEEEEESSCCCHHHHH CS
  F420_oxidored  12 ealasgllaaga..qpheivvansrnpekaeela 43 
                    e+la g++a g   ++ +++ a  ++ + a++l 
     KKY20102.1 219 ESLADGAVAMGLprKEANLM-A-AQTMKGAASLV 250
                    67888888888754555555.4.67777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2064.50
//
Query:       KKY20103.1  [L=267]
Description: putative ctd kinase subunit gamma [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-46  156.2   0.0    5.4e-46  155.6   0.0    1.2  1  CTK3      CTD kinase subunit gamma CTK3
    1.4e-15   57.2   7.0    2.6e-15   56.3   7.0    1.4  1  CTK3_C    CTD kinase subunit gamma CTK3 C-terminus


Domain annotation for each model (and alignments):
>> CTK3  CTD kinase subunit gamma CTK3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.6   0.0     6e-50   5.4e-46       1     122 [.       2     125 ..       2     126 .. 0.98

  Alignments for each domain:
  == domain 1  score: 155.6 bits;  conditional E-value: 6e-50
                 --HHHHHHHHHHHHTT--SSGGGTHHHHHHHHHTGGGHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHTT--S..THHHHHHHTHHHHHHHHS- CS
        CTK3   1 mDpFEvrsqFsqlLrkLtasvqslqkaaqfAlknkdkeedlfscileqlesadlNtranilyfidllleeslkegqsekspYveslkrdilklvdsvvP 99 
                 +DpFEvr++F+++L++L+as++s+ k a++Alk++d++edl+sci+eqle++++N+rani+yf+++l++ + ++ +++++ Yv+++ rdi ++vd+v+P
  KKY20103.1   2 ADPFEVRMRFTTQLQHLSASTTSSLKCAHYALKHRDQDEDLHSCIIEQLERNNMNNRANIMYFLEQLCDLAGRSTKDGHAMYVTMIARDIDRIVDAVAP 100
                 6************************************************************************************************** PP

                 ..HHHHHHHHHHHHHHHHHHHTTSS CS
        CTK3 100 ..gsgaaNlksvrkilkslklksll 122
                   gsgaaN+k+vr +l +l+ +s+l
  KKY20103.1 101 kdGSGAANVKVVRAVLAGLRGRSVL 125
                 999*******************998 PP

>> CTK3_C  CTD kinase subunit gamma CTK3 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   7.0   2.9e-19   2.6e-15       2      67 ..     201     260 ..     200     262 .. 0.95

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 2.9e-19
      CTK3_C   2 kkqilkRiEeDRErhKRlrEniWvvprskekslateaEfenlWeetsdlneddeeealeeleelne 67 
                 k+ i++RiEeDREr+KRlrE++W+v +++       +E++++Wee s+ + dd  ++ ee+ e+++
  KKY20103.1 201 KRVIEQRIEEDRERNKRLRESVWAVGTKD------AEELDKMWEEGSNAGIDDLVMYGEEAAERRQ 260
                 889*************************9......89************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       806  (0.0449551); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1862.27
//
Query:       KKY20104.1  [L=566]
Description: putative t-complex protein theta [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.5e-148  493.9   9.8   5.2e-148  493.7   9.8    1.0  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
      0.092   12.3   0.0       0.19   11.2   0.0    1.4  1  EAL         EAL domain
       0.12   12.4   2.6       0.16   12.0   0.1    2.3  2  TetR_C_14   MftR C-terminal domain


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  493.7   9.8  8.6e-152  5.2e-148       1     490 [.      38     549 ..      38     550 .. 0.97

  Alignments for each domain:
  == domain 1  score: 493.7 bits;  conditional E-value: 8.6e-152
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekale 99 
                 +a++v+t+lGP G++K+++n+ +k+++T+D+atil+el++ hPaakllv+a+++q+ e+GDGT+ v+iLageLl++ae+l+++g+++++i++gyeka +
  KKY20104.1  38 IAQTVQTSLGPYGRNKIVINHLQKMILTSDAATILRELDVVHPAAKLLVMASQQQEAEMGDGTNMVIILAGELLKKAEELLRMGLKTSDIVSGYEKAQS 136
                 799************************************************************************************************ PP

                 HHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHH.HCHCCCSEECSCCCEECCCCEECECTTSEEESEEEESS--SSTTSSC CS
  Cpn60_TCP1 100 kaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAv.klieenekeldlgrikvvkieggsledselveGlvldkgvlspdmpk 197
                  al+ L+e +v+  ++ +++++L+k+ rt+++ k+   e + +++lv+dAv  ++++n   +++++i+vvki gg++++s++v+G+v+ +++ ++   k
  KKY20104.1 137 VALKLLEELEVDRLNDIRSKDDLVKALRTVVGAKQAGVE-DIVASLVADAVlAVLPKNPLGFNVDNIRVVKIMGGNIDQSRVVKGMVFGREPDGN--VK 232
                 *********9999999******************88888.***********99999999***********************************9..9* PP

                 EEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S--HHHHHHHHHHHT-- CS
  Cpn60_TCP1 198 klenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrvkkkdlerlakatGat 296
                 k ++akv ++++++++ +tetk+tv l++a+e+ +++  ee+qle  ++++ +sg +vvv+   + +la h+l++ gil+++ ++k++l+rl++++Gat
  KKY20104.1 233 KARKAKVGVFSCPIDTSQTETKGTVLLKNAKEMLDFTHGEENQLETAIKELYDSGLRVVVAGATVGELAMHYLNRFGILVIKILSKFELRRLCRVVGAT 331
                 *************************************************************************************************** PP

                 EBSCGGGGGCGC-EEEEEEEECCETTCCEEEEECE...SSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCCCC CS
  Cpn60_TCP1 297 avssledltpeelGtakkveeekigsekttiieev...ksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkeyak 392
                 ++++l+ + p+e+Gt++ ve+ +ig +++t++++    +  ++ati+lrgat++ ld++erai+d++nvvk++++d+++v+G+Gate++l ++++++a+
  KKY20104.1 332 PLARLGAPMPDEMGTVDVVETIEIGGDRVTVFRQEdpsTVTRTATIVLRGATQNHLDDVERAIDDGVNVVKAITKDPRLVAGAGATEIQLVERISAIAD 430
                 *********************************6444477899******************************************************** PP

                 TSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHHHTTX..................TTEEEETTTTC...EEECCCCTXEEEHHHHHHHH CS
  Cpn60_TCP1 393 svsgeeqlaieafakALevipktLaeNaGldpievlaklraahnkge..................kelgidvesge...iidlveagvvDplkvkrqal 470
                 +++g  q ai+++a+A+evip+tLae aGld++evla+l+ ahn+g+                   ++g+d+es++   i d +++g++D +  k++a+
  KKY20104.1 431 KTPGLPQHAIRKYAEAFEVIPRTLAESAGLDATEVLARLYTAHNQGKkasesdeevsddseeepyWTTGVDLESSDntgILDTLDEGILDLMVSKSWAI 529
                 *******************************************888877777888888888888889999999999999******************** PP

                 HHHHHHHHHHHCEEEEEXXX CS
  Cpn60_TCP1 471 ksAteaastiLrideiikak 490
                 k+Ate+a+t+L++d+ii+a+
  KKY20104.1 530 KLATESARTVLSVDQIIVAR 549
                 *****************997 PP

>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.1e-05      0.19     133     176 ..     271     315 ..     262     322 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.1e-05
                 HHHHH..HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE CS
         EAL 133 lealq.eevlarLralGirialddfgtgysslsylarlppdiiKl 176
                  e+ q e ++++L + G r+++++++ g+ +++yl r+ + +iK+
  KKY20104.1 271 GEENQlETAIKELYDSGLRVVVAGATVGELAMHYLNRFGILVIKI 315
                 444555699***********************************9 PP

>> TetR_C_14  MftR C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.3      0.25   1.5e+03      65      80 ..     174     189 ..     160     190 .. 0.69
   2 ?   12.0   0.1   2.6e-05      0.16      23      90 ..     419     487 ..     400     498 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.25
                 TTSHHHHHHHHHHHHH CS
   TetR_C_14  65 addlvprtvaaavlaa 80 
                  +d+v+ +va avla+
  KKY20104.1 174 VEDIVASLVADAVLAV 189
                 4677777777777776 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHHH.HSHHHHHHHHHHHHHHHHHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHHHHHHHHH CS
   TetR_C_14  23 eehrrRmrLil.tvPaLqAhstlryaawrevvAefvAeRtgtdaddlvprtvaaavlaaalaayeqwla 90 
                  ++ +R++ i+ ++P L  h+ ++ya++ ev+ + +Ae  g+da+++++r+  a   +  ++  ++ ++
  KKY20104.1 419 IQLVERISAIAdKTPGLPQHAIRKYAEAFEVIPRTLAESAGLDATEVLARLYTAHNQGKKASESDEEVS 487
                 56667766665169***********************************99887777666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.51
# Mc/sec: 3352.58
//
Query:       KKY20105.1  [L=546]
Description: putative chitin binding [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-21   75.6   8.7    1.1e-20   73.7   7.8    2.2  2  Ribosomal_L12    Ribosomal protein L7/L12 C-terminal domain
      2e-11   44.9   0.6    3.9e-11   44.0   0.6    1.5  1  LPMO_10          Lytic polysaccharide mono-oxygenase, cellulo
    1.4e-09   37.5  13.7    1.4e-09   37.5  13.7    3.5  2  Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain


Domain annotation for each model (and alignments):
>> Ribosomal_L12  Ribosomal protein L7/L12 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.2   1.2e+03      12      38 ..     411     435 ..     404     439 .. 0.77
   2 !   73.7   7.8   1.8e-24   1.1e-20       1      66 [.     479     545 ..     479     546 .] 0.98

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.2
                    HHHHHHHHHHHH---HHHHHHHHTTTT CS
  Ribosomal_L12  12 KiaVIKaVreitglgLkeaKdlVeaap 38 
                    Ki+ I  V +i +l L e  dlV ++ 
     KKY20105.1 411 KISAI--VDQISQLTLLETADLVASLK 435
                    55555..78999**********98765 PP

  == domain 2  score: 73.7 bits;  conditional E-value: 1.8e-24
                    EEEEEEE-TT-.HHHHHHHHHHHH---HHHHHHHHTTTTSTEEEEE-HHHHHHHHHHHHCTT-EEEE CS
  Ribosomal_L12   1 fdViLksagak.KiaVIKaVreitglgLkeaKdlVeaapkvvkegvskeeAeeikkkLeeaGAevel 66 
                    f++ Lks++a+ K +VIK+V+++ gl+L+++K++Ve+apkv+ke v+keeAe+i ++L+++GA+ve+
     KKY20105.1 479 FNLKLKSFDAAaKPKVIKEVKAMLGLSLVDSKKFVESAPKVLKESVPKEEAEKIVAALKAIGAVVEM 545
                    899******999******************************************************8 PP

>> LPMO_10  Lytic polysaccharide mono-oxygenase, cellulose-degrading
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.6   6.5e-15   3.9e-11       1     194 []      53     222 ..      53     222 .. 0.73

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 6.5e-15
                 -EEEEETTBHHHHHHHHGTCTTTTTHHHHSHH....HHTHGHHHTTTG-EEETSHHHHSSTT-TTT.TTTH..HHTT....GGGGT.TST...S--... CS
     LPMO_10   1 HGylssPksRqarcdegkegpetspqspnseavearCggaavqyeensvekekrlkaappdgglcg.agds..rpneaggksglde.rga...wakpvq 92 
                 HG ++sP  R a                 ++a  a+C g+++ y  +s          +p+g++ g  +     + ++++++++   +g+   +++ ++
  KKY20105.1  53 HGLITSPTPRPA-----------------GDALAAAC-GQQAYYMRSS----------DPAGNIQGeLQVVdsGSGYNATACHIWLcAGHqyeDNTANV 123
                 888888888883.................34445679.7667666666..........6777777754443443444466677666733345588889* PP

                 EEEESESEEEEEEEESS-S-EEEEEEEEE.....-TT--TTS-HHGGGEEEBEEEESSCEESCCTCEEEEEEEEET......SS--EEEEEEEEEEE.T CS
     LPMO_10  93 ttytegseiefeveltapHktghfefyit.....kecfdptkpLtwadlepfatvsdpksrapskeatyyrkvklP......egrtgehvllqvWqyvt 180
                 + yt+g+++ +++++ apH tg  ++ i      +   dp   ++w+d+   ++    +   + +++++  ++++P      +   g +v++ +W+   
  KKY20105.1 124 QSYTAGETVAMTFDIRAPH-TGVANVSIVdtatnTAIGDP--LISWSDFADNSA---TT---QADQESF--SITIPtdlgdkCSTAGACVIQHYWNA-- 209
                 *******************.9********76653333666..69***7774322...22...2455666..99***9999998999***********.. PP

                 STSSSEEEEEEEEE CS
     LPMO_10 181 anstqeaFynCaDv 194
                 a s ++++ +C+D+
  KKY20105.1 210 A-SVDQTYESCVDF 222
                 8.999*******96 PP

>> Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   2.3       1.9   1.1e+04      32      41 ..     270     283 ..     267     290 .. 0.43
   2 !   37.5  13.7   2.4e-13   1.4e-09       1      47 [.     411     462 ..     411     476 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.9
                      HHHHHHHH.....H CS
  Ribosomal_L12_N  32 AAAPvava....aa 41 
                      A+ +++va    aa
       KKY20105.1 270 AVVAAVVAtssdAA 283
                      33222233344333 PP

  == domain 2  score: 37.5 bits;  conditional E-value: 2.4e-13
                      HHHHHHHHHHTSBHHHHHHHHHHHHHHTTHHHH...HHHHHH.H....HHHHHH CS
  Ribosomal_L12_N   1 kieeiieaikeltvLElseLvkalEekFGVsAA...APvavaaa....aaaaaa 47 
                      ki++i+++i++lt+LE+++Lv  l++++++++    AP a+  +    aaaa+a
       KKY20105.1 411 KISAIVDQISQLTLLETADLVASLKSRLNIPDMpvfAPPAA--GlgvgAAAAPA 462
                      799****************************9545554333..13332333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1346  (0.0750739); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.47
# Mc/sec: 3494.96
//
Query:       KKY20106.1  [L=418]
Description: putative pyruvate dehydrogenase e1 component alpha subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     1e-114  382.6   0.2   1.2e-114  382.3   0.2    1.1  1  E1_dh           Dehydrogenase E1 component
    0.00037   19.8   0.0    0.00072   18.8   0.0    1.4  1  DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
     0.0073   16.1   1.1      0.015   15.1   1.1    1.5  1  TPP_enzyme_C    Thiamine pyrophosphate enzyme, C-terminal TPP


Domain annotation for each model (and alignments):
>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.3   0.2  2.1e-118  1.2e-114       1     297 [.      81     374 ..      81     377 .. 0.98

  Alignments for each domain:
  == domain 1  score: 382.3 bits;  conditional E-value: 2.1e-118
                 HHHHHHHHHHHHHHHHHHTTSS-S-----TT-HHHHHHHHHTS-TTSEEEESS--HHHHHHTT--HHHHHHHHTT-T....TTSSGTT-.-E..BTT.. CS
       E1_dh   1 eklvllrrvedaldalykrkkrigfyhlsagqealkvgiaaalekeDliiteYReagvllarglsleeilaeltgkv....kgkggsrhelmyaekesr 95 
                 +++v++rr+e+a+d+lyk+kk++gf+hls gqea++vgi++alekeD++it+YR++g+ l+rg ++++i+ el g++     gkggs+h +   +k+  
  KKY20106.1  81 YDMVAIRRMEMAADRLYKEKKIRGFCHLSTGQEAVAVGIEHALEKEDHLITSYRCHGFALMRGGTVKSIIGELLGRRhgiaYGKGGSMH-MF--AKG-- 174
                 689**************************************************************************99*99*******.77..888.. PP

                 BEEE-SSTTTHHHHHHHHHHHHHHHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--EEEEEEEESEETTEEHHHH-S---GGG..TTTTS-EEEEET CS
       E1_dh  96 ilggngivgaqvplvaGialaakiegkkevailliGDgAanqGdvyealnlaalwklpvifvveNNkygisTeaekasaskeladrargvgipglrVdg 194
                 ++ggngivgaqvp++aGia+a +++++k+++i+l+GDgA+nqG+v+e++n+a+lw+lpvif +eNNkyg++T+a+++sa +e+++  rg++ipgl+++g
  KKY20106.1 175 FYGGNGIVGAQVPVGAGIAFANQYNDNKNTTICLYGDGASNQGQVFESFNMAKLWSLPVIFGCENNKYGMGTSAARSSALTEYYK--RGQYIPGLKING 271
                 *************************************************************************************..************ PP

                 TSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHSSSHHHHHHHHHHHH-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHH CS
       E1_dh 195 nDplavyeAvkfAaeraregkgpllielvtYRyggHsesDdpstyrtreeveevrkkkdpiqrlkelLvkkgvvseeelkeiekevrkeveeavkkaes 293
                 +D+lav++Av+  +e++ +gkgpl+ e+vtYRyggHs+sD+++tyrtree++ +r+++dpi++lk++L +++v +e+elk+i+ke+r +v+ +v++ae+
  KKY20106.1 272 MDVLAVKAAVQYGKEWTASGKGPLVYEYVTYRYGGHSMSDPGTTYRTREEIQRMRSTNDPIAGLKQKLLDWEVTTEDELKKIDKEARSKVDAEVEEAEK 370
                 **************************************************************************************************9 PP

                 S--- CS
       E1_dh 294 kkel 297
                    +
  KKY20106.1 371 MDVP 374
                 8766 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.2e-07   0.00072     115     173 ..     184     242 ..     177     306 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.2e-07
  DXP_synthase_N 115 tsisaalGlavardlkgekkkvvaviGDgaltgGmafealnnigelkkkllvilNdNem 173
                     + + ++ G+a a++++++k++++++ GDga   G  fe++n ++  +  ++    +N+ 
      KKY20106.1 184 AQVPVGAGIAFANQYNDNKNTTICLYGDGASNQGQVFESFNMAKLWSLPVIFGCENNKY 242
                     5667899**********************************998877777766666655 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   1.1   2.5e-06     0.015      24      87 ..     176     244 ..     158     290 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.5e-06
                   ETTTS-TTTHHHHHHHHHHH....STTSEEEEEEEHHHHHHT.GGGHHHHHHT.T-SEEEEEEE-SBCCC CS
  TPP_enzyme_C  24 sgglgtmGyglpaAiGakla....kpdrevvaivGDGgflmi.lqelatavrr.nlpitvvvlnNegygm 87 
                    gg g  G ++p++ G+++a    +++++ +++ GDG+     + e  ++++   lp+++ + nN+ ygm
    KKY20106.1 176 YGGNGIVGAQVPVGAGIAFAnqynDNKNTTICLYGDGASNQGqVFESFNMAKLwSLPVIFGCENNK-YGM 244
                   5699***************745433368*********96554444444444441456666665555.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 2550.53
//
Query:       KKY20107.1  [L=322]
Description: putative hmg box protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-06   27.0   0.9    4.3e-06   27.0   0.9    2.3  2  HMG_box     HMG (high mobility group) box
  ------ inclusion threshold ------
          1    9.4   8.7        2.7    8.1   1.0    2.7  3  TPR_MLP1_2  TPR/MLP1/MLP2-like protein
        4.6    6.2  12.3      0.073   12.1   4.0    1.9  2  DUF3987     Protein of unknown function (DUF3987)


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.4     0.058   3.5e+02      30      64 ..      38      72 ..      34      74 .. 0.84
   2 !   27.0   0.9   7.2e-10   4.3e-06       2      69 .]     227     293 ..     226     293 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.058
                HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box 30 eiskklgekWkalseeeKkkYeekaekekaryeke 64
                e+ ++l+e  k+  e  K+ Y+e+ +++k r +++
  KKY20107.1 38 ELRRRLAEIEKQNDETRKRIYRERKAQDKMRLNRA 72
                67778888888899999**********99998876 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 7.2e-10
                 -SS--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   2 kRplsafflfskeqraklkaenPelknaeiskklgekWkalseeeKkkYeekaekekaryekekpeyk 69 
                  Rp   +  f+ ++  kl  e  +    +i +++ ++W++ see+Kkk ee+++ e  ryek+++e+k
  KKY20107.1 227 SRPIAPYDQFLADH-TKLLLEQGSVPQDNIPSTIRRMWNEASEEAKKKAEEDYNDEMVRYEKAMDEWK 293
                 67777777777664.56777777889999*************************************98 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2     0.003        18      85     120 ..      16      51 ..      10      57 .. 0.83
   2 ?   -1.3   0.1      0.36   2.2e+03      99     120 ..      87     108 ..      52     109 .. 0.71
   3 ?    8.1   1.0   0.00045       2.7      33      84 ..     266     317 ..     257     319 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.003
  TPR_MLP1_2  85 aeleeseesweeqkeelekelselekriedlneqNk 120
                 a l +++    +q+ +++++  el++r+ ++++qN+
  KKY20107.1  16 APLHRNTTLAPSQELAYRSKCIELRRRLAEIEKQND 51 
                 55666666677899999999**************96 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.36
  TPR_MLP1_2  99 eelekelselekriedlneqNk 120
                     ++l+ l +r ++ n +N+
  KKY20107.1  87 RLSPEQLQALASRTDETNGHNE 108
                 4444677777777777777775 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00045
  TPR_MLP1_2  33 kqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesak 84 
                 + +e  k+a+++Y  e+v  +++++e +++r+  + + a  a   ++a++a+
  KKY20107.1 266 ASEEAKKKAEEDYNDEMVRYEKAMDEWKKARKSGSAAAAATAGEPDSADTAR 317
                 44566689***********************998888777776666666665 PP

>> DUF3987  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.2      0.16   9.5e+02      72      97 ..      45      70 ..      29     103 .. 0.50
   2 ?   12.1   4.0   1.2e-05     0.073      57     103 ..     264     312 ..     257     321 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.16
     DUF3987 72 eeelkeyeaekkaweaelealekkaa 97
                e e+++ e++k+++++++++ + +++
  KKY20107.1 45 EIEKQNDETRKRIYRERKAQDKMRLN 70
                22222233333333333333333333 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 1.2e-05
     DUF3987  57 lrpleeieaelreeyeeelkeyeaekkaweaelealekkaakak..eak 103
                  ++ ee+ ++++e y++e+ +ye+++++w++++++  ++aa+ +  ++ 
  KKY20107.1 264 NEASEEAKKKAEEDYNDEMVRYEKAMDEWKKARKSGSAAAAATAgePDS 312
                 5678999************************999877766665565333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1660  (0.0925874); expected 358.6 (0.02)
Passed bias filter:                      676  (0.0377043); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 2017.35
//
Query:       KKY20108.1  [L=533]
Description: hypothetical protein UCRPC4_g04242 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-05   24.7   0.2       0.75   10.2   0.1    4.4  4  TPR_8     Tetratricopeptide repeat
    5.9e-05   22.9   0.8        3.7    7.9   0.2    4.3  4  TPR_2     Tetratricopeptide repeat
    0.00012   22.3   1.4        1.3    9.3   0.1    3.5  3  TPR_12    Tetratricopeptide repeat
      0.007   16.3   0.4        1.4    9.1   0.0    2.8  2  TPR_7     Tetratricopeptide repeat
     0.0074   16.1   2.2         20    5.2   0.1    3.6  3  TPR_10    Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.11   12.8   1.7       0.13   12.5   0.5    1.8  2  Clr5      Clr5 domain
       0.15   12.7   1.8        2.9    8.8   0.1    3.3  3  TPR_4     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.018        47       5      27 ..     267     289 ..     266     291 .. 0.88
   2 ?    0.1   0.1      0.51   1.3e+03       9      22 ..     396     409 ..     392     413 .. 0.82
   3 ?    3.6   0.0     0.038        98       3      32 ..     432     461 ..     430     462 .. 0.88
   4 !   10.2   0.1   0.00029      0.75       6      29 ..     480     503 ..     479     503 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.018
                 HHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyeka 27 
                 +n ++ +++lg+  eA e++  +
  KKY20108.1 267 HNRAMNLFSLGRAAEAREAIDSC 289
                 789999************98776 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.51
                 HHHHHTT-HHHHHH CS
       TPR_8   9 siylklgdyeeAke 22 
                 +iy+++g+ ++A  
  KKY20108.1 396 RIYSEQGKVDAALD 409
                 79********9975 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.038
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldp 32 
                   y+++++++   ++ eAk  +e +l   p
  KKY20108.1 432 TIYMIARTHFISDNMVEAKFNFEDVLGRTP 461
                 679********************9997766 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00029
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekale 29 
                 +l++iy+ lg+ + A ey  k+l+
  KKY20108.1 480 RLAQIYKRLGEDDTAREYGLKCLK 503
                 79****************999996 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0024       6.1       4      24 ..     266     286 ..     263     289 .. 0.90
   2 ?    0.4   0.0      0.35     9e+02      10      25 ..     397     412 ..     393     413 .. 0.87
   3 ?    1.5   0.0      0.16   4.2e+02       4      28 ..     433     457 ..     430     462 .. 0.86
   4 !    7.9   0.2    0.0014       3.7       6      29 ..     480     503 ..     479     503 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0024
       TPR_2   4 lynlGlayyklgdyeeAleaf 24 
                  +n+++ ++ lg+ +eA+ea 
  KKY20108.1 266 FHNRAMNLFSLGRAAEAREAI 286
                 589***************985 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.35
       TPR_2  10 ayyklgdyeeAleafe 25 
                 +y ++g+ + Al++++
  KKY20108.1 397 IYSEQGKVDAALDLMK 412
                 7999*******99875 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.16
       TPR_2   4 lynlGlayyklgdyeeAleafekAl 28 
                  y++++ ++ +++  eA+  fe +l
  KKY20108.1 433 IYMIARTHFISDNMVEAKFNFEDVL 457
                 6999****************99876 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0014
       TPR_2   6 nlGlayyklgdyeeAleafekAle 29 
                 +l+++y +lg+ + A+e+  k+l+
  KKY20108.1 480 RLAQIYKRLGEDDTAREYGLKCLK 503
                 79****************999986 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.039        99       7      25 ..     267     285 ..     259     289 .. 0.78
   2 !    9.3   0.1   0.00052       1.3      12      72 ..     397     457 ..     392     460 .. 0.88
   3 !    6.3   0.0    0.0046        12      46      72 ..     476     502 ..     469     504 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.039
      TPR_12   7 nnlaavlrrlgrydeAlel 25 
                 +n+a+ l+ lgr +eA+e 
  KKY20108.1 267 HNRAMNLFSLGRAAEAREA 285
                 4888888889998888875 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00052
      TPR_12  12 vlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 ++ ++g+ d Al+l ++    ++  +G+  ++ta+t + ++r+++ +++  eA   +e++l
  KKY20108.1 397 IYSEQGKVDAALDLMKARAYHHELHFGHFDHETANTIYMIARTHFISDNMVEAKFNFEDVL 457
                 6888999999999988888888777*********************999999998888876 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0046
      TPR_12  46 ttlrnLgrlyralgryeeAlelleeal 72 
                 ++   L+++y +lg+ + A+e+  ++l
  KKY20108.1 476 NCEGRLAQIYKRLGEDDTAREYGLKCL 502
                 555667777777777777777776666 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.019        49       5      24 ..     394     413 ..     392     418 .. 0.87
   2 !    9.1   0.0   0.00054       1.4       4      21 ..     480     497 ..     477     507 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.019
       TPR_7   5 LarlysrlGdyeeAielyeq 24 
                 L r+ys++G+ + A++l ++
  KKY20108.1 394 LNRIYSEQGKVDAALDLMKA 413
                 669************99775 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00054
       TPR_7   4 nLarlysrlGdyeeAiel 21 
                 +La++y rlG+ ++A e+
  KKY20108.1 480 RLAQIYKRLGEDDTAREY 497
                 7**************998 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.023        59       6      24 ..     267     285 ..     266     290 .. 0.89
   2 !    5.2   0.1    0.0078        20      11      26 ..     397     412 ..     396     421 .. 0.83
   3 ?    4.7   0.1     0.011        29       8      29 ..     481     502 ..     479     504 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.023
      TPR_10   6 nNLanalrqrgrydeAeal 24 
                 +N a+ l+++gr +eA++ 
  KKY20108.1 267 HNRAMNLFSLGRAAEAREA 285
                 799*************985 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0078
      TPR_10  11 alrqrgrydeAealle 26 
                 +++++g+ d+A++l++
  KKY20108.1 397 IYSEQGKVDAALDLMK 412
                 8************964 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.011
      TPR_10   8 LanalrqrgrydeAealleeal 29 
                 La ++ ++g+ d A+++  ++l
  KKY20108.1 481 LAQIYKRLGEDDTAREYGLKCL 502
                 9****************99998 PP

>> Clr5  Clr5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.5   5.1e-05      0.13      19      54 .]      47      82 ..      45      82 .. 0.95
   2 ?   -3.7   0.0       5.8   1.5e+04      14      33 ..     396     414 ..     394     420 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.1e-05
        Clr5 19 enrsLkdvmeiMeeehgFkatkrqyktrfkkWgfrk 54
                e+ s++++ +i++ +   + t+r +  r ++W++ k
  KKY20108.1 47 EQTSIQEIEQIIKLQQRLQTTERELMDRVRQWNIEK 82
                7889*****************************988 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5.8
        Clr5  14 rLYleenrsLkdvmeiMeee 33 
                 r Y  e+ + + + + M+++
  KKY20108.1 396 RIY-SEQGKVDAALDLMKAR 414
                 667.5667888888888763 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1    0.0012       2.9       5      24 ..     267     286 ..     266     288 .. 0.89
   2 ?    1.1   0.0      0.35     9e+02      11      24 ..     398     411 ..     396     418 .. 0.81
   3 ?   -0.8   0.1       1.4   3.6e+03       7      22 ..     481     496 ..     479     496 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0012
       TPR_4   5 laLArallalGdldeArall 24 
                 +++A+ l+ lG+++eAr++ 
  KKY20108.1 267 HNRAMNLFSLGRAAEAREAI 286
                 689**************976 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.35
       TPR_4  11 llalGdldeArall 24 
                 + ++G  d+A++l+
  KKY20108.1 398 YSEQGKVDAALDLM 411
                 67899999999875 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.4
       TPR_4   7 LArallalGdldeAra 22 
                 LA+ + +lG+ d+Ar+
  KKY20108.1 481 LAQIYKRLGEDDTARE 496
                 899999***9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      674  (0.0375927); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.49
# Mc/sec: 3251.47
//
Query:       KKY20109.1  [L=303]
Description: putative oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-29  102.1   0.0    3.9e-29  101.9   0.0    1.1  1  NmrA            NmrA-like family
    6.6e-15   55.5   0.0    1.3e-14   54.5   0.0    1.5  1  NAD_binding_10  NAD(P)H-binding
    3.3e-06   26.8   0.0    4.3e-05   23.1   0.0    2.5  2  Epimerase       NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.066   12.7   0.2        0.1   12.1   0.2    1.3  1  adh_short       short chain dehydrogenase


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9   0.0   8.7e-33   3.9e-29       1     228 [.       9     229 ..       9     263 .. 0.89

  Alignments for each domain:
  == domain 1  score: 101.9 bits;  conditional E-value: 8.7e-33
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GGS-HHHHHHHHHHHHHHHS-SEEEE CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfyskeiedgkklvdAakeaGvkhfiy 99 
                 I+v GaTG+ G + v+all+ag++v +l+R     +++    aGv++   d  +++slv+al+gv++v s +g  +   + + +lvdA ++aGv +fi+
  KKY20109.1   9 IAVAGATGNVGPATVDALLDAGFNVVVLTRIG--STSTPPTGAGVTVKPVDYTSQDSLVAALQGVQGVVSLLG--GPGFALQNALVDASVKAGVLRFIP 103
                 89****************************75..55666789*******************************..************************ PP

                 EE---GG.GT.SSS---TTTHHHHHHHHHHHHC.TS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHHHHHHHHHHH CS
        NmrA 100 SslgddndrsnaeepavphfdsKaeieeyvral.gipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGafvikilkdp 197
                 S++g+d    + +  a p+f++K++  +y++   g +  f ++g+ ++ f+ +  +  vg +a  ++  + l +g  k +  +   +++++++ ++ +p
  KKY20109.1 104 SEFGSDT--LHPKTAAFPVFAEKIKTHKYLEHVvGENKAFSCTGILTGPFTDFGFK--VGLLADVKKRSISLVDGGDKPFSSTPIPEVAKAIVGVFRNP 198
                 *****99..5578889****************9999****************8777..666555554455555555333333789************** PP

                 HHHTTEEEEE-SEEE-HHHHHHHHHHHHTS- CS
        NmrA 198 rklkgkriklagntlsgneivelfekkigkt 228
                 +++k+k i + + +l+ n+i++l ek++g +
  KKY20109.1 199 EATKNKDIYVQSYVLTQNQILRLCEKVTGSK 229
                 ****************************976 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   2.8e-18   1.3e-14       1     184 []      13     198 ..      13     198 .. 0.78

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 2.8e-18
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHHHHHHHHHHHHCT--EEEE CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggkdeegaknivdaakeagvkRfvl 95 
                     GAtG+vG + v+ ll++ g++v++l+R  +  +  +  +g++v  +d t++++l +al+g++ Vvs lgg g      +++vda  +agv Rf+ 
      KKY20109.1  13 GATGNVGPATVDALLDA-GFNVVVLTRIGSTSTP-PTGAGVTVKPVDYTSQDSLVAALQGVQGVVSLLGGPGF--ALQNALVDASVKAGVLRFIP 103
                     9****************.5********9887774.5679******************************9996..6899***************9 PP

                     EEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHH.SSSEEEEEEE-CEE-..........ST--SEEEEETTSS----EEEHHHHHHHHHH CS
  NAD_binding_10  96 vsaigvgdevpgefgewnkellkaylaakraaeellra.sgldwTivrpggLtd..........epttkyrvvekgepfkggsisradVAdvlva 179
                      s +g++  +p++       ++++ ++ +++ e+++ + + +  T +  g +td           ++  + +v++g++   +s++   VA+++v 
      KKY20109.1 104 -SEFGSDTLHPKTAAF---PVFAEKIKTHKYLEHVVGEnKAFSCTGILTGPFTDfgfkvglladVKKRSISLVDGGDKPF-SSTPIPEVAKAIVG 193
                     .888988655554333...5889999999999999855367888888777766633332222103455555555554432.46788889999998 PP

                     HCTXG CS
  NAD_binding_10 180 vlddp 184
                     v+ +p
      KKY20109.1 194 VFRNP 198
                     88776 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   9.6e-09   4.3e-05       1      71 [.       9      77 ..       9      92 .. 0.90
   2 ?    1.0   0.0     0.052   2.3e+02     199     238 ..     168     207 ..      82     208 .. 0.53

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 9.6e-09
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE- CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihl 71
                i V+GatG +G a+v+all++g +v++l+r  s+s     + +++  +d+t +++l ++++  +++ v+ l
  KKY20109.1  9 IAVAGATGNVGPATVDALLDAGFNVVVLTRIGSTSTPPTGAGVTVKPVDYTSQDSLVAALQ--GVQGVVSL 77
                68*********************************************************99..77777766 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.052
                 SEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEE CS
   Epimerase 199 evtllgdgtalRdflyveDvaeaillvlehvdagdkgeiy 238
                 ++ l++ g+       + +va+ai+ v ++++a ++++iy
  KKY20109.1 168 SISLVDGGDKPFSSTPIPEVAKAIVGVFRNPEATKNKDIY 207
                 3444444444444444556666666666666666655555 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   2.2e-05       0.1       1      71 [.       7      71 ..       7      80 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.2e-05
                SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHH CS
   adh_short  1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealveka 71
                k++ v Ga++ +G a++++l+ +G++vvv+ r  ++          +ga +++ +vD t+++++ a+++ +
  KKY20109.1  7 KTIAVAGATGNVGPATVDALLDAGFNVVVLTRIGSTS------TPPTGAGVTVKPVDYTSQDSLVAALQGV 71
                7899*************************99886654......2222334666666777666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 1988.52
//
Query:       KKY20110.1  [L=306]
Description: hypothetical protein UCRPC4_g04244 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        9.2    4.9   5.3         12    4.6   5.3    1.1  1  Presenilin  Presenilin


Domain annotation for each model (and alignments):
>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   5.3   0.00064        12     221     266 ..      93     138 ..      65     200 .. 0.48

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.00064
  Presenilin 221 vvlaaeekkaevaeseeeeeaekkkeeasesskeeeseeesseksa 266
                 ++++++e ++e ++++ +e++e+++ +++e++++++++++++++s+
  KKY20110.1  93 MWEKSQEGHEEIRQAKAKERREQQRVKEQEQHDRRKRNKRTADSSN 138
                 2221111111111111111111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2124  (0.118467); expected 358.6 (0.02)
Passed bias filter:                      722  (0.04027); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 1947.14
//
Query:       KKY20111.1  [L=1071]
Description: putative nad+ dependent glutamate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-64  216.9   0.0    4.9e-64  216.4   0.0    1.3  1  ELFV_dehydrog    Glutamate/Leucine/Phenylalanine/Valine dehyd
    6.3e-18   63.8   0.0    7.6e-13   47.0   0.0    2.1  2  Bac_GDH          Bacterial NAD-glutamate dehydrogenase
  ------ inclusion threshold ------
      0.028   14.3   0.0       0.35   10.7   0.0    2.3  2  ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation 


Domain annotation for each model (and alignments):
>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.4   0.0   8.2e-68   4.9e-64       1     243 []     704     969 ..     704     969 .. 0.93

  Alignments for each domain:
  == domain 1  score: 216.4 bits;  conditional E-value: 8.2e-68
                    T--.TTTTTHHHHHHHHHHHHHHHHTTTS-STTEEEEEE--.SHHHHHHHHHHHHCT-EEEEEEESSEEEEETTEE-HHHHHHHHHCSSSSTTHSH CS
  ELFV_dehydrog   1 GGs.ldrpeaTglGvvyyveemlkklkldslegkrvaisGs.GnvgsyaallltelgakvvavsDssGviydpeGldieellelkeerksvkeykk 94 
                    GG+ +d++++T+l+v+ yv  +++kl+l+  + k+++++G+ G++gs+++ll    ++k++a++D+ Gv++dpeGld +ell+l+++r +++e++ 
     KKY20111.1 704 GGIpHDKYGMTTLSVREYVLGIYRKLNLNPQNVKKLQTGGPdGDLGSNEILLG---NEKYTAIVDGAGVLVDPEGLDQRELLRLAKKRVMISEFDI 796
                    9****************************99999******************9...99********************************999997 PP

                    H..STSTSEEESHHSHH.....................HHSS-SEEEE-.SSTTSB-HHHHTHTH...HTT-SEEE-SSSS-B-HHHHHHHHHTT- CS
  ELFV_dehydrog  95 s..sekkaeyieneeel.....................lelkvdilvPc.Atqneideenakali...kngvklvvEgANlpttqeAkeileeagv 163
                    +  s+++++++ +e+++                     ++ ++d++vPc +++++id +++++li   k++++++vEgANl++tq+Ak +le+ag+
     KKY20111.1 797 TklSSQGYRVLVDETNItlpsgeqinngmifrntfhlrNQEQFDLFVPCgGRPESIDLSSVSKLIvdgKSTIPYIVEGANLFITQDAKLRLEKAGC 892
                    78844456656565666677777778888888776655445***************************99************************** PP

                    EEE-HHHHTTHHHHHHHHHHHHHHCT----HHHHHHHHHHHHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHHCT CS
  ELFV_dehydrog 164 lvvpdkaaNaGGVtvSslEmlqnlarlswteeevdeklkkimkeifkavveeaeeykqelvkganiagfekvaeamkaqG 243
                    ++++d++aN+GGVt+SslE+l++la   +++  + e+++ + +  + a++e++ ++ qe +k +++++fe+++++++++G
     KKY20111.1 893 ILYKDASANKGGVTSSSLEVLASLA---FDDAGFIENMCIKPDGTIPAFYEAYVQNVQETIKRNAMLEFEAIWREHQETG 969
                    **********************955...5*************************************************98 PP

>> Bac_GDH  Bacterial NAD-glutamate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   1.3e-16   7.6e-13     605     794 ..     430     634 ..     405     745 .. 0.80
   2 !   14.8   0.0   6.3e-07    0.0037    1059    1101 ..     871     913 ..     859     994 .. 0.89

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 1.3e-16
     Bac_GDH 605 ltfsqeyieetllkhpeiarllvelFearfdpaleeeeeeeee..........ekleeeieeaLde.vasldedrilrrllelieatlRtnfyqkdedg 692
                  tf++eyi e ++k+p ++r+l+  F +    +++++++   +               ++++ +++ v++ ++d ++ ++  +  ++l+tnfy+     
  KKY20111.1 430 ETFTSEYILEIINKYPGLVRSLYLNFANTHYVQTRDADDFIPTlsylrlqtdpVLDDGKLAQLISRtVSTEHDDMVMTSFRIFNGTVLKTNFYTP---- 524
                 478999*****************99999999888877765555888988886422234566666651555566666666666667789*****99.... PP

     Bac_GDH 693 eakeyislKldpskipelPePrPlfEif.VysprvegvHLRggkvARGGlRW..SDRreDf....Rt...EvLGLvKaQqvKNavIVPvGaKGGFvvkr 781
                  +k  +s++++p+ +pe   P+Pl+ +f V  +++ g HLR+ ++ARGG+R   S  +e +    R+   E  GL  +Qq KN  I   G+KG  ++ +
  KKY20111.1 525 -TKVALSFRFNPTFLPEHEYPQPLYGMFlVIGSEFRGFHLRFRDIARGGIRIvkSRNKEAYsinaRSmfdENYGLANTQQRKNKDIPEGGSKG-VILLD 621
                 .6889**********************97789*******************7445556766333332444899***********997777776.56666 PP

     Bac_GDH 782 lpkaadreallae 794
                  p++ +r+  +++
  KKY20111.1 622 FPHQDKRQVAFEK 634
                 6767677655544 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 6.3e-07
     Bac_GDH 1059 vgEGgNLGltQlgRiEyalkggrintDaiDNsaGVdcSDhEVN 1101
                  + EG+NL +tQ +++   ++g  ++ Da  N +GV +S  EV 
  KKY20111.1  871 IVEGANLFITQDAKLRLEKAGCILYKDASANKGGVTSSSLEVL 913 
                  89***************************************95 PP

>> ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   5.9e-05      0.35      26      87 ..     560     630 ..     554     654 .. 0.83
   2 ?    0.3   0.0     0.099   5.9e+02      73      93 ..     767     787 ..     765     797 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.9e-05
                      EEEE-TTSSEEEEEEEETT--HH...........HHHHHHHHHHHHHHHTTSS-EEEEEEEES-GGGS-HHHH CS
  ELFV_dehydrog_N  26 aqhssalgPakGGiRfhpsvnld...........evkaLaalmtyKnalvdlpfGGakggvkidpkklseeel 87 
                        h + +  a+GGiR+ +s n++           e   La  +  Kn   d+p GG+kg++ +d  +++++++
       KKY20111.1 560 GFHLRFRDIARGGIRIVKSRNKEaysinarsmfdENYGLANTQQRKN--KDIPEGGSKGVILLDFPHQDKRQV 630
                      55666777899***********9999999999999999999999999..9***********999776666554 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.099
                      EEEES-GGGS-HHHHHHHHHH CS
  ELFV_dehydrog_N  73 ggvkidpkklseeeleritrr 93 
                      +gv +dp++l+++el r+ ++
       KKY20111.1 767 AGVLVDPEGLDQRELLRLAKK 787
                      7999*************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1071 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 7123.27
//
Query:       KKY20112.1  [L=106]
Description: hypothetical protein UCRPC4_g04246 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.21   10.8   5.8       0.25   10.5   5.8    1.0  1  DUF4106   Protein of unknown function (DUF4106)
        2.3    7.7   5.3        2.6    7.5   5.3    1.1  1  Sec62     Translocation protein Sec62


Domain annotation for each model (and alignments):
>> DUF4106  Protein of unknown function (DUF4106)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   5.8   2.8e-05      0.25     201     264 ..      11      77 ..       4      88 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 2.8e-05
     DUF4106 201 pkpt.qqptvqnpaqqptqq..ptvqqpaqvqqpaqqpppqpaqqptvqnpaqqqpqteqghkrsre 264
                  kp   qp    p ++pt++   t ++pa   +pa++p    a +p+ +  a+ + +  +  k  ++
  KKY20112.1  11 TKPRvLQPVSTSPVRKPTKKssSTTKKPATATKPAKKPASGSATKPVKKVVAKTKAKVSKATKGGKK 77 
                 5665579***********97335789***************99999988888877776665554443 PP

>> Sec62  Translocation protein Sec62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   5.3   0.00029       2.6      27      88 ..      28      89 ..      10      98 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00029
       Sec62 27 kkeklkevkkkekaekvfkelkksqlalrveklkekekkkkkeekkkkkkkkkkvkleieee 88
                +k++++++kk ++a+k  k+  + + + +v+k  +k+k+k ++++k+ kk+k+k++++ +++
  KKY20112.1 28 TKKSSSTTKKPATATKPAKKPASGSATKPVKKVVAKTKAKVSKATKGGKKEKSKPTVTAKDK 89
                22233333333444555566666677788999988888888888999999999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1206  (0.0672653); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 767.24
//
Query:       KKY20113.1  [L=696]
Description: putative mitochondrial distribution and morphology protein 34 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4831.43
//
Query:       KKY20114.1  [L=139]
Description: hypothetical protein UCRPC4_g04248 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      0.006   16.4  11.6     0.0073   16.1  11.6    1.2  1  Pox_Ag35       Pox virus Ag35 surface protein
     0.0075   16.6   0.1      0.016   15.5   0.0    1.6  2  MADF_DNA_bdg   Alcohol dehydrogenase transcription factor Myb
  ------ inclusion threshold ------
      0.044   13.9  14.4      0.045   13.9  14.4    1.2  1  RNA_polI_A34   DNA-directed RNA polymerase I subunit RPA34.5
      0.095   12.6   0.0       0.16   11.8   0.0    1.4  1  HTH_AsnC-type  AsnC-type helix-turn-helix domain
        7.2    7.1  13.0        7.3    7.0   1.1    2.2  2  PBP1_TM        Transmembrane domain of transglycosylase PBP1 
        9.5    5.5   8.4         13    5.0   8.4    1.1  1  DUF4407        Domain of unknown function (DUF4407)
        9.7    5.3   4.9         10    5.2   4.9    1.1  1  Zip            ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> Pox_Ag35  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1  11.6   2.8e-06    0.0073      16     101 ..      48     135 ..      31     139 .] 0.58

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.8e-06
    Pox_Ag35  16 ktleeiRahlrsea......edadkkeddifpeDieiPspkqekkkrattprkkpakkekkkkeeekeeaaeeeeledseedeenendedes 101
                 k+++ +R++  se+      ++  ++++d  pe  + P    +k k + tprkk+a k++ k++  k+++ +ee +++ e +ee+  de+ s
  KKY20114.1  48 KRIKRLRDKYPSETdggaptSTNGDDAQDAKPEAAKTP----TKAKTPRTPRKKAAEKKSGKESPTKKRKVKEESADEAETKEEDGSDEQGS 135
                 45677777777777433222222222333333333333....33455889999999888888887777777777666666666655555444 PP

>> MADF_DNA_bdg  Alcohol dehydrogenase transcription factor Myb/SANT-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   6.1e-06     0.016      28      64 ..      30      65 ..      22      85 .. 0.78
   2 ?   -2.5   0.2       2.6   6.5e+03      73      73 ..     109     109 ..      92     125 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.1e-06
  MADF_DNA_bdg 28 aweeiaeelnekvdveeckkkwknLRdryrrelrkkk 64
                   w+++a+e +   +  +++k++k LRd+y +e     
    KKY20114.1 30 NWNTVAQECG-ISTGSAVQKRIKRLRDKYPSETDGGA 65
                  5********9.445778************99986555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.6
  MADF_DNA_bdg  73 k 73 
                   +
    KKY20114.1 109 T 109
                   1 PP

>> RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9  14.4   1.7e-05     0.045     110     199 ..      51     135 ..      10     139 .] 0.61

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-05
                   XXXXXXXXXXXXXXXXXXX............XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX..XXXXXX...XXX CS
  RNA_polI_A34 110 kgLkmRFkPfGsgdgppgtigssseesegekekkkkpkakkkekkkkkkkaaeedeeeeapkkkkkkkkkkkekkeeekkeekeeeskks 199
                   k L+ ++     g  p +t  + +++++ + e +k+p ++k++++ +kk a++++  +e+p+kk+k k+++ +++  e+kee++++++ s
    KKY20114.1  51 KRLRDKYPSETDGGAPTST--NGDDAQDAKPEAAKTPTKAKTPRTPRKKAAEKKS-GKESPTKKRKVKEESADEA--ETKEEDGSDEQGS 135
                   5555555443333333443..3344444666666677777777777777777777.3444444444444444444..4677766666555 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.4e-05      0.16      19      42 .]      30      54 ..      22      54 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.4e-05
  HTH_AsnC-type 19 syaeLAervGlSe.stvlrRvrrLe 42
                    +  +A+++G+S+ s+v++R++rL+
     KKY20114.1 30 NWNTVAQECGISTgSAVQKRIKRLR 54
                   5778999***996489********7 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   1.1    0.0028       7.3      32      69 ..      54      98 ..      40     100 .. 0.55
   2 ?    5.7   6.9    0.0076        20      13      51 ..      96     134 ..      95     139 .] 0.69

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0028
     PBP1_TM 32 dddydd......eyddeedDdd.dddeeeevprkgkkkkpprkkr 69
                 d y          + + dD +  + e  + p k+k+ ++prkk 
  KKY20114.1 54 RDKYPSetdggaPTSTNGDDAQdAKPEAAKTPTKAKTPRTPRKKA 98
                33443322234333333444441455667779999****999995 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0076
     PBP1_TM  13 GkkakakparkkasrrrrrdddyddeyddeedDddddde 51 
                  k+a++k+ ++ ++++r+  ++  de + +e+D  d++ 
  KKY20114.1  96 KKAAEKKSGKESPTKKRKVKEESADEAETKEEDGSDEQG 134
                 466778889999999999877777767777777655543 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   8.4    0.0052        13     151     242 ..      45     129 ..      41     137 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0052
     DUF4407 151 aaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalraelaeleaerakeraasqaaaaaddG 242
                 a ++r+++lr+++ +e+dg        +  +g+ a+ +k ++++  ++ ++ ++   ++++ +++  + +  ++++ ke++a +a++++ dG
  KKY20114.1  45 AVQKRIKRLRDKYPSETDGGA--P---TSTNGDDAQDAKPEAAKTPTKAKTPRTP--RKKAAEKKSGKESPTKKRKVKEESADEAETKEEDG 129
                 789***************954..3...3346777777777777777777777776..55555555555555555555555555555555554 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   4.9     0.004        10     111     177 ..      69     132 ..      21     138 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.004
         Zip 111 pkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseeedke 177
                 ++  ++++++++a+k+  + k++ + +k  ++ae+++ ++s++++r+ k+e+ ++++++++ + ++e
  KKY20114.1  69 TNGDDAQDAKPEAAKTPTKAKTPRTPRK--KAAEKKSGKESPTKKRKVKEESADEAETKEE-DGSDE 132
                 3334445556666666666666666665..5577777777788888888887777777764.33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1410  (0.0786435); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 927.08
//
Query:       KKY20115.1  [L=602]
Description: putative arginyl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-99  332.9   4.7    3.1e-98  328.9   5.5    2.3  2  tRNA-synt_1d     tRNA synthetases class I (R)
    2.4e-17   63.2   0.1    7.5e-17   61.6   0.1    1.9  1  DALR_1           DALR anticodon binding domain
    3.6e-10   40.3   0.0    1.1e-09   38.7   0.0    1.9  1  Arg_tRNA_synt_N  Arginyl tRNA synthetase N terminal domain
  ------ inclusion threshold ------
      0.025   15.0   2.4       0.33   11.5   0.4    2.7  2  DUF16            Protein of unknown function DUF16


Domain annotation for each model (and alignments):
>> tRNA-synt_1d  tRNA synthetases class I (R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0     0.096   4.3e+02      38      54 ..      97     113 ..      88     118 .. 0.83
   2 !  328.9   5.5    7e-102   3.1e-98      17     348 ..     130     492 ..     122     493 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.096
                   HHHHHHHHHHHHHHHHH CS
  tRNA-synt_1d  38 GhLrstiiGdavsrlle 54 
                    hLr t+iG  + +  e
    KKY20115.1  97 DHLRKTVIGSIMKNKTE 113
                   6********99988776 PP

  == domain 2  score: 328.9 bits;  conditional E-value: 7e-102
                   SST-EEEEE----BTTS--BHHHHHHHHHHHHHHHHHHHCT-EEEEEE--B-SSTCHHHHHHHHHHHTTTTTTS-----SCCCHHHHHHHHCCCSHC CS
  tRNA-synt_1d  17 rekkkvvvdfssPniakemhvGhLrstiiGdavsrlleflGydvirlnhvGDWGtqfGlLiaylekkqdekllqeqelqdLeafykeakkdydeeei 113
                   + +kk++v+fssPniak++h+GhLrstiiG+++++l+ ++G+dv+r+n++GDWG+q+GlL+ ++++ +de+ l ++++++L+++y++++    e+e 
    KKY20115.1 130 KGRKKIIVEFSSPNIAKPFHAGHLRSTIIGGFIANLYSYIGWDVLRMNYLGDWGKQYGLLANGYKQFGDEEELLKNPINHLFNVYVKINDIVREQEG 226
                   6789*************************************************************************************99999998 PP

                   .................................CCHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHCT---EC.--CC.CCCCCHHHHHH CS
  tRNA-synt_1d 114 .................................faerarnyvvkLqsgdedirklwkllvditrtelqklydrldvtlie.rGes.lykeslneivk 175
                                                      e+arny++ +++gd +   lw++  d++ ++++++y+rl++   e  Ges +  e++  + k
    KKY20115.1 227 pikelkeqikadkasgkdvseleqmlqplvdasEDEKARNYFKSMEDGDRNALALWEKFRDLSIKKYEQTYARLNIDFDEySGESkVAPETISMVSK 323
                   99***************************9988889****************************************999989***999999****** PP

                   HHHCTT-EEECTTCEEEEECCC.TSSCCE.ECC-TTS-B-HHHHHHHHHHHHHHTT--SEEEEEEECCCHHHHHHHHHHHHCTTSSTTTSEEEEEEE CS
  tRNA-synt_1d 176 elkkkglvkesdGalvvfldef.gkrlgv.vvqksDGgylytttDiaaakerkeelkadkvlyvidsrqslhlqqiflilkkigyvpeskdlehanf 270
                   el +kg+ +es+Ga +v+ +++ +k+l+  + q++DG+ ly+t+Diaa++er+++ ++dk++yv+ ++q+lhl q+f ++   g++  s + +h+nf
    KKY20115.1 324 ELAEKGISEESEGAVIVDFEKHgAKKLAKaIFQRKDGTPLYLTRDIAAIRERYDKYHFDKMIYVVAAQQDLHLAQFFKVTELSGHKEISEKCQHINF 420
                   **********************6688998899*****************************************************888********* PP

                   --EE-TTSSBSBCSSSTC-BHHHHHHHHHHHHHHHHCCCCCCTS-CCCCHCHHHHHHHHHHHHCCCCTS-TTS-EE-- CS
  tRNA-synt_1d 271 GmvlgkdkkkfktrkGetvkLadlLdealeralqlikeknkdkvlqadelekvaeavgvgaikyaDlsknrindyifd 348
                   Gmv     ++++trkG + +L+d+L +  e+  + ++ kn+ k +q+ ++++va+++g++a+ ++D+  +rin y f+
    KKY20115.1 421 GMV-----RGMSTRKGTVKFLDDILRDVGEKMHE-VMKKNEAKYSQVANPDAVADTLGITAVMVQDMTGKRINGYDFN 492
                   ***.....9*******************999888.9*****************************************8 PP

>> DALR_1  DALR anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.1   1.7e-20   7.5e-17       1      97 [.     507     602 .]     507     602 .] 0.98

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 1.7e-20
                 HHHHHHHHHHHHHHTTCTTCCCCHCCHCCS-SHHHHHHHHHHHTHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHCTSTTSCTHHH.HHHHHHH CS
      DALR_1   1 vqyahaRiksilrkaeeegekleeealalleeeeekeLlkalaqfpevleeaaeelephklaeylyeLaatfhkfYnkervlkeeeeelaaaRLaLv 97 
                 +qyahaR++si rk   + ekle+++l+ll+e +  +L++ l q+p+v+ +++++lep ++++yl+ + ++ ++ Y+  rv ++ee+ l  aR+aL+
  KKY20115.1 507 LQYAHARLCSIGRKVSVDREKLESANLDLLTESHATDLVRMLSQWPDVVLNTVKTLEPATVLTYLFRMTHALSSSYDILRVAGSEEDIL-VARMALM 602
                 6****************************9999*******************************************************9.****995 PP

>> Arg_tRNA_synt_N  Arginyl tRNA synthetase N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   2.4e-13   1.1e-09       3      85 .]      15      94 ..      13      94 .. 0.95

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 2.4e-13
                     HHHHHHHHHHHHHSS-HHHHGGG-E-.SSGGG-SEEEEGGGG--TT-..-HHHHHHHHHHT---TTTEEEEEEETT.EEEEEE CS
  Arg_tRNA_synt_N  3 lkeaiaealkkaagadleeeeiviekpknpkfGDyatnvamqlakklkknPreiAeeiaeklekseiiekvevagpGFiNffL 85
                     ++e+i++al  ++g ++e + ++++ ++  ++GD+ ++v  +  +  +k+P+e+A+ei++++++s+ +ek ++ gp F++ff+
       KKY20115.1 15 YREHISNALGTIVGLEPEAIYPKLQWTQTLDKGDLMLPV--PALQIKGKKPQELATEIMNNFPESDLVEKPKAFGP-FVQFFF 94
                     689**********999*********99***********8..8999999****************************.****96 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4   7.3e-05      0.33      40      89 ..     204     253 ..     190     265 .. 0.77
   2 ?    2.2   0.1     0.057   2.6e+02      47      95 ..     430     481 ..     391     489 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.3e-05
                 HHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHH CS
       DUF16  40 eakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetlelil 89 
                 ++ ++ l++   k++++v++q+  ikelk+++ka +++ + v e  +++ 
  KKY20115.1 204 KNPINHLFNVYVKINDIVREQEGPIKELKEQIKADKASGKDVSELEQMLQ 253
                 5678888888999*******************998887776666666553 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.057
                 .HHHHHHHHHHHHHHHHHHHHHHHHHHHHH..........HHHHHHHHHHHH CS
       DUF16  47 geqinkleqkvekqgekikelkveqkaqgeeln...kvdetleliletLqki 95 
                 +  ++ l ++ +  gek++e  ++ +a+  ++    +v +tl + +  +q++
  KKY20115.1 430 KGTVKFLDDILRDVGEKMHEVMKKNEAKYSQVAnpdAVADTLGITAVMVQDM 481
                 556788899999999**99999999999998876777888888777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4133.33
//
Query:       KKY20116.1  [L=312]
Description: putative nadh-cytochrome b5 reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-33  113.6   0.0    6.7e-33  113.0   0.0    1.3  1  FAD_binding_6  Oxidoreductase FAD-binding domain
    8.8e-27   93.9   0.0    1.3e-26   93.4   0.0    1.3  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    1.7e-05   25.0   0.0     0.0027   17.9   0.0    2.2  2  NAD_binding_6  Ferric reductase NAD binding domain
  ------ inclusion threshold ------
      0.041   14.1   0.0      0.072   13.3   0.0    1.4  1  FAD_binding_9  Siderophore-interacting FAD-binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   0.0   1.5e-36   6.7e-33       2      99 .]      68     167 ..      67     167 .. 0.95

  Alignments for each domain:
  == domain 1  score: 113.0 bits;  conditional E-value: 1.5e-36
                    EEEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEEC..ETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHHHCS-TT-EEEEEEEE- CS
  FAD_binding_6   2 lkltekeevsedtrifrfklpsekqklglpvGqhvflrlk..ikgeaviRsYtpissenekGelellvkvypgGkmsqaLdelkigdtleikGPlG 95 
                    ++ltek+ vs++++i+rf+lp++++ lglp+Gqh+ l +    + ++v+RsYtpiss++++G+++llvk yp+G++s +L  lkigdt++++GP+G
     KKY20116.1  68 FPLTEKTIVSHNVAIYRFSLPHPTDILGLPIGQHISLAAAiaGQPKEVVRSYTPISSDEDQGYFDLLVKAYPQGNISAYLTGLKIGDTMKVRGPKG 163
                    689************************************95445689************************************************* PP

                    SEEC CS
  FAD_binding_6  96 kfeY 99 
                     + Y
     KKY20116.1 164 AMVY 167
                    9988 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   0.0   2.9e-30   1.3e-26       1     108 [.     177     288 ..     177     289 .. 0.95

  Alignments for each domain:
  == domain 1  score: 93.4 bits;  conditional E-value: 2.9e-30
                    EEEEGGGGHHHHHHHHHHHHHCT.....TCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSST CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeak.....dktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleellslkke 91 
                    miagGtGi+P+++++rai++        d+t+v l+++n + ed+l++++le++ k+ +g ++v +v++++++ w+gg g+v+ ++++++++ + +
     KKY20116.1 177 MIAGGTGITPMLQIIRAIVRGRPrnggkDTTQVDLIFANVNPEDILLKDDLEQIVKEDDG-IRVHYVLNNPPEAWTGGVGFVTGEMIKKHCPPPAD 271
                    9*******************93358999**************************999999.99*****************************99** PP

                    TEEEEEECSHHHHHHHH CS
  NAD_binding_1  92 ethvyvCGppgMikavr 108
                    ++ +++CGpp+M+ a +
     KKY20116.1 272 DVKILLCGPPPMVSALK 288
                    ************99876 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   5.9e-07    0.0027       3      64 ..     174     235 ..     172     244 .. 0.79
   2 !    5.1   0.0    0.0052        23     133     155 ..     269     291 ..     260     292 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.9e-07
                    xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   3 nvllvagGiGitpfisilkdllkksk.kealktkkikliwvvressslewfkdvLneleeeks 64 
                    ++ ++agG+Gitp++ i++ +++    +   +t+++ li+++ + +++ ++kd L+++ +e+ 
     KKY20116.1 174 HIGMIAGGTGITPMLQIIRAIVRGRPrNGGKDTTQVDLIFANVNPEDI-LLKDDLEQIVKEDD 235
                    6779*****************986552667889999999999999988.45557777777665 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0052
                    xxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 133 knssvgvfvCGppklvkevkklv 155
                    + + v ++ CGpp +v  +kk++
     KKY20116.1 269 PADDVKILLCGPPPMVSALKKAT 291
                    5678999***********99976 PP

>> FAD_binding_9  Siderophore-interacting FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.6e-05     0.072      61     120 ..     106     164 ..      84     165 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.6e-05
  FAD_binding_9  61 eelpederpvmRtYtvraldaeaeeldidfvlHgdegpaarwAaqAqpGdelaivgPgga 120
                    +++ ++ + v+R+Yt+ + d++++ +d+   +  + g  +++ +  + Gd++++ gP+ga
     KKY20116.1 106 AAIAGQPKEVVRSYTPISSDEDQGYFDLLVKAYPQ-GNISAYLTGLKIGDTMKVRGPKGA 164
                    467889999***************99997777666.*********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 2088.96
//
Query:       KKY20117.1  [L=565]
Description: putative tannase subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     1e-103  347.8   1.4   1.3e-103  347.5   1.4    1.0  1  Tannase   Tannase and feruloyl esterase


Domain annotation for each model (and alignments):
>> Tannase  Tannase and feruloyl esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.5   1.4  7.1e-108  1.3e-103      17     457 ..      78     536 ..      61     549 .. 0.92

  Alignments for each domain:
  == domain 1  score: 347.5 bits;  conditional E-value: 7.1e-108
     Tannase  17 ikfevelPsewngrflqvGgggfagniqtttskaevlskalarGfatagtdaGhdasda......dasfa.knpealldfayralkkvtdvakaLvkaf 108
                 + + ++ P ++++r+l++Gggg+a n+   +     ++ ++ +G+a   td+G+  +++         ++ +n+  +++f+y+a +++  ++ka +k+f
  KKY20117.1  78 LTW-LPTPDKFQNRWLSTGGGGYAINSGSSS-----VPGGIVYGAAAGYTDGGFGMFQDdaievfLIENGtINWHNIYMFGYQAHHELSAIGKAFTKNF 170
                 333.45566*****************99999.....899***************999877777777778889*************************** PP

     Tannase 109 ygksper..sYfeGcSdGGRegltaaqRypddydGiiagapalnfvqlalygafsaraeatddldaiisaaelkviakavlaaCDalDgvaDglvqdpe 205
                 ++ s  +  +Y++GcS+GGReg +++qR++d++dG++  apa++f  +++ ++ s  +e+   l++ ++++el +i++++++aCD lDg++Dg+v++++
  KKY20117.1 171 FNMSDAKlyVYYQGCSEGGREGWSQIQRFGDEWDGAVVAAPAFRFSFQQVQHLYSNVVEQS--LNYKPPPCELTKIVNETIKACDSLDGETDGVVSRTD 267
                 *998776669**********************************************99999..99********************************** PP

     Tannase 206 lCklafe.....vesllCeagtgsngd..........scltaaqvavvaaiyeglknvlssGerlylglevaseetdaagelasstakwelgstvkaes 289
                 lCkl+f+     + +++C+a  +++g+          ++++a++ av+++i++g ++  s+Ge++y ++ ++s+ +da+++ +s+ ++we+++t    s
  KKY20117.1 268 LCKLNFDiasliGTPYYCAAAAATSGQggsaatpvqnGTIAAQGEAVAKEILKGIRD--SEGEQVYFSYTISSTFSDATTVWNSTSNQWEISIT----S 360
                 ********9**99*****9998666667788889999******************88..******************************99994....6 PP

     Tannase 290 aaeealrnvvakfardlnldlss.lklealkerkttslvelsslidatepdlskfrsrgGklilyhgtaDpvvspadsikyyesveaklgad......l 381
                     +++ v+   ++  n d++s ++ ++l ++  ++ +++++++++  pdl++f++ gGk+i++hg++D ++++++s+ y+esv++ ++ d       
  KKY20117.1 361 LGGSFVE-VLLDLKNGSNIDSLSgVTYDTLCDWIWEGWNRYADSLQTNWPDLTPFNKAGGKIIHFHGESDFSIPSTSSVYYHESVRKIMYPDlsfndsT 458
                 6666776.44458899******98999*****************************************************************9999999 PP

     Tannase 382 eeleeFarlylvpGvaHcgggsgtsai....dlLealvdWVEngkaPerlvatkakkekksagrtrplcryPkiakykgk 457
                 ++l +++rl+lvpG++Hc   s++++       L+ l+dWVEn+  P  l+at  ++++  +g+ ++lc +P ++ ++g+
  KKY20117.1 459 AALSDWYRLFLVPGAGHCAPSSTQPNGpwpqTSLQNLIDWVENDIVPTTLNATVLQGDN--IGQNQQLCAWPLRPLWTGP 536
                 9******************9999998789999**************************9..*****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 3626.52
//
Query:       KKY20118.1  [L=381]
Description: hypothetical protein UCRPC4_g04252 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-18   65.0   0.2      1e-17   63.7   0.2    1.7  1  TFIIIC_sub6    TFIIIC subunit triple barrel domain
  ------ inclusion threshold ------
       0.49   10.3   2.2        5.3    7.0   0.3    2.4  2  YrzO           YrzO-like protein


Domain annotation for each model (and alignments):
>> TFIIIC_sub6  TFIIIC subunit triple barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.2   1.2e-21     1e-17       2      93 ..      26     189 ..      25     190 .. 0.91

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 1.2e-21
                  -EE..EEEEEESSTT----T....................................................................T-EEEEE-TT CS
  TFIIIC_sub6   2 etEtvyvtlDlsspefaera...............................................................eeeeakkdlqilgLd 36 
                  +tEt+y+ +D s +    ++                                                               ++  + +++qilgLd
   KKY20118.1  26 DTETFYIDIDTSANYGFAEPsnkkrklqhgptrasretsqsqtpvpsrvrgqerptdstrdshepdspqpegspasttqvqedPQDAPGTEVQILGLD 123
                  799999999999877666667888899*****************************************************9999999*********** PP

                  SSS-EEEETTEEEEEEEE--SSEEEEEE-S---................--EEE-S-EEEEEEE-- CS
  TFIIIC_sub6  37 tenPlisigdkvfeGeweeliGTelifedddda........alrklee.ellaasskrikltevkl 93 
                  t nP+is++++ f+++w+++iGT+l++++ +d+         l + ++ +lla+s+ ++  +++kl
   KKY20118.1 124 TLNPIISYRGQYFTCTWTDMIGTNLFISEPSDEtptsttipPLYTAPGfDLLAQSRIKLLARRAKL 189
                  *****************************77777999999866677779**********9999886 PP

>> YrzO  YrzO-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.017   1.5e+02      20      27 ..     190     197 ..     187     202 .. 0.89
   2 ?    7.0   0.3    0.0006       5.3      19      42 ..     234     257 ..     230     260 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.017
        YrzO  20 iNRNGRKk 27 
                 iNR GRKk
  KKY20118.1 190 INRPGRKK 197
                 9******8 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0006
        YrzO  19 AiNRNGRKkiKqqAElielLKElk 42 
                   N N  ++iKqqA ++e L + k
  KKY20118.1 234 SNNANVNREIKQQASFLERLMDIK 257
                 56889999*******999886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1300  (0.0725082); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2456.15
//
Query:       KKY20119.1  [L=609]
Description: putative vacuolar protein sorting protein 62 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-11   42.9   1.6    2.7e-11   42.5   0.6    1.6  2  Vps62     Vacuolar protein sorting-associated protein 62
  ------ inclusion threshold ------
      0.019   13.6   0.1      0.028   13.0   0.1    1.1  1  DUF1302   Protein of unknown function (DUF1302)


Domain annotation for each model (and alignments):
>> Vps62  Vacuolar protein sorting-associated protein 62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       0.3   2.7e+03     239     262 ..     183     206 ..     180     208 .. 0.84
   2 !   42.5   0.6     3e-15   2.7e-11     365     488 ..     401     525 ..     367     531 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.3
       Vps62 239 ikalikaygptvyfhpdeeylpss 262
                 i  ++ +y+p+v++   e++ p  
  KKY20119.1 183 IPQFVMEYAPIVHLFSGEQFWPCD 206
                 6667889*************9976 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 3e-15
       Vps62 365 kiGehvgdWehvtlrisnfsgeLlsvyfsqhsgGewvdasdlefieggnkavvyssknghasypkpglvlqGsaklgiGirndaarsklvvDssakyei 463
                 + G+hvgdWeh  +r     g+   v+fs+hs G+  +   +e i    ++vvy+++ +ha y++pgl  q    l  Gi  d +    + D + +++ 
  KKY20119.1 401 RFGNHVGDWEHSMVRFK--HGKPKGVFFSEHSFGDAYHYDAVEKIG--KRPVVYAARGSHANYATPGL--QPYV-LPWGILTDETDRGPLWDPALNVHS 492
                 679***********986..69999**********999999999875..8******************6..5544.788888776655566777766666 PP

       Vps62 464 vaaeylesavae....P....aWlqymreWGPk 488
                  + +y+e+++      P    +W+ ++ +WG k
  KKY20119.1 493 YTYDYIEDELRSsnftPqapvEWFYFTGHWGDK 525
                 666666544432111121113477777777765 PP

>> DUF1302  Protein of unknown function (DUF1302)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   3.1e-06     0.028     120     157 ..     379     419 ..     346     420 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.1e-06
     DUF1302 120 ellDAf..vygnfdlgdqplsvRlGkqvvnWGEslf.iqgG 157
                  + DAf   +++f+lg++ l+vR+G++v  W  s++ + +G
  KKY20119.1 379 GIIDAFwfYFYSFNLGNTVLNVRFGNHVGDWEHSMVrFKHG 419
                 5788872256899******************9999877777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3896.10
//
Query:       KKY20120.1  [L=343]
Description: putative vacuolar membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-41  139.2   2.6    9.8e-41  139.2   2.6    1.5  2  STIMATE   STIMATE family


Domain annotation for each model (and alignments):
>> STIMATE  STIMATE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.46   8.2e+03      49      75 ..      50      76 ..      34      90 .. 0.57
   2 !  139.2   2.6   5.5e-45   9.8e-41       1     125 []     100     227 ..     100     227 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.46
     STIMATE 49 lsawlkqllvyllilvlmKlvvlllll 75
                +++w+ +++  +++ vl  l+ l++ +
  KKY20120.1 50 VKIWAFDASKQVVGSVLLHLANLVMSM 76
                555655555555555555554444333 PP

  == domain 2  score: 139.2 bits;  conditional E-value: 5.5e-45
     STIMATE   1 CswYflnlllDttlGvlilylllkllekllkklk....leslesGnYgkpkalsawlkqllvyllilvlmKlvvllllllfeevlakvaellLswlesn 95 
                 Cs+Y+lnl++DttlG++il++ll+l+++ ++ +      es++sGnYg+p+++++w+kq+l+y+l+l+ mK++v++l++l+++ l +v++++L+w+e+n
  KKY20120.1 100 CSFYLLNLAIDTTLGIPILIILLRLFHAGFRLTAlanpPESIQSGNYGDPPRYTWWMKQSLIYFLGLLGMKICVFILFQLMPW-LGRVGDWALRWTEGN 197
                 ******************************999989999**********977******************************8.*************** PP

     STIMATE  96 pklqlllvmvivPlilNvlqfwiiDsilkk 125
                 + +q+++vm+i+Pli+N++q++iiD ++kk
  KKY20120.1 198 EAIQIAFVMLIFPLIMNAMQYYIIDIFIKK 227
                 ****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 2171.76
//
Query:       KKY20121.1  [L=133]
Description: putative pre-mrna branch site protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-18   65.7   0.6    4.1e-18   65.0   0.6    1.4  1  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    3.5e-05   23.4   0.0    4.2e-05   23.1   0.0    1.1  1  RRM_5         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
  ------ inclusion threshold ------
      0.018   14.9   0.0      0.025   14.4   0.0    1.2  1  RRM_occluded  Occluded RNA-recognition motif
      0.075   12.4   0.1       0.11   11.9   0.1    1.2  1  DPCD          DPCD protein family
        0.1   12.8   0.0       0.14   12.4   0.0    1.2  1  RRM_8         RRM-like domain


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.6   1.1e-21   4.1e-18       1      69 [.      33      99 ..      33     100 .. 0.95

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 1.1e-21
                EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69
                lfV+nL+++vt eeL +lF+kfG ++ i+  +   +++kg+afV +++  dA++A ++lng ++++r l
  KKY20121.1 33 LFVKNLSYNVTSEELFDLFGKFGAVRQIRQGT--ANNTKGTAFVVYDDVTDAKQACDKLNGFNFQNRYL 99
                8************************8887777..69******************************986 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.2e-08   4.2e-05      26      98 ..      30     103 ..      15     128 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.2e-08
       RRM_5  26 gsVllVyglepdkvnldklFnlfclYgnvervk..flktkketalvqmgdasaveravqHLnnaklfgkrleval 98 
                   +l+V +l   +v+ ++lF lf+ +g v++++     + k+ta+v   d +++++a + Ln+ +  ++ l v  
  KKY20121.1  30 TRILFVKNLSY-NVTSEELFDLFGKFGAVRQIRqgTANNTKGTAFVVYDDVTDAKQACDKLNGFNFQNRYLVVLY 103
                 56889999976.6999****************94457899***********************998666555544 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   6.9e-06     0.025       2      68 ..      31      99 ..      30     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.9e-06
  RRM_occluded  2 rtisllplsDtvnkariralveek..egeikkivLvpdheGAivefkdekiagkasLaLdgsefegkkl 68
                  r++ + +ls +v+++++ +l+ +     +i++      ++ A+v+++d+++a +a  +L+g +f+++ l
    KKY20121.1 31 RILFVKNLSYNVTSEELFDLFGKFgaVRQIRQGTANNTKGTAFVVYDDVTDAKQACDKLNGFNFQNRYL 99
                  67788899999999999999999944455555567777889*************************987 PP

>> DPCD  DPCD protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1     3e-05      0.11     153     187 ..      91     125 ..      72     129 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3e-05
        DPCD 153 sfahanntLiisYkKPkeileaekellkelkklka 187
                  f+++n  L++ Y++P+++l++++ + ++ ++l+ 
  KKY20121.1  91 GFNFQNRYLVVLYHQPEKMLKSNQDMAERQENLER 125
                 3899********************99988888765 PP

>> RRM_8  RRM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.9e-05      0.14      17      74 ..      35      93 ..      30     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.9e-05
       RRM_8 17 vshilYpvtsevLhqvYdaYGava.vqvLavstwqvealvsflsshDaerarsathgrn 74
                v ++ Y vtse L   +  +Gav  ++  + ++ +  a v++   +Da++a    +g n
  KKY20121.1 35 VKNLSYNVTSEELFDLFGKFGAVRqIRQGTANNTKGTAFVVYDDVTDAKQACDKLNGFN 93
                67899*****************9625666778888899999999999999987777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 972.66
//
Query:       KKY20122.1  [L=1531]
Description: putative phd finger and domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-10   39.6   0.5    1.7e-09   38.1   0.5    1.8  1  JHD         Jumonji helical domain
    2.6e-08   34.3   0.0    1.7e-07   31.6   0.0    2.3  1  JmjC        JmjC domain, hydroxylase
    6.3e-08   32.4   7.0    6.3e-08   32.4   7.0    3.1  4  PHD         PHD-finger
    7.2e-06   25.9   0.0    3.6e-05   23.6   0.0    2.0  1  Cupin_8     Cupin-like domain
  ------ inclusion threshold ------
       0.11   12.1   0.0       0.38   10.4   0.0    1.9  2  Cupin_1     Cupin
       0.67   10.1  31.8       0.11   12.6   4.0    4.6  4  Zn_clus     Fungal Zn(2)-Cys(6) binuclear cluster domain
       0.86    9.7   7.6       0.28   11.3   1.9    2.7  2  Elf1        Transcription elongation factor Elf1 like


Domain annotation for each model (and alignments):
>> JHD  Jumonji helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.5   6.8e-13   1.7e-09       2      37 ..     809     844 ..     808     849 .. 0.93

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 6.8e-13
         JHD   2 niemQlriyeiEkklkteekfkfPsfetihWfvakr 37 
                 n +mQlri+e Ekk k+++kf++P+f+ ++Wf+a +
  KKY20122.1 809 NYDMQLRIWESEKKCKIDQKFRYPHFQKVMWFAAIK 844
                 789******************************966 PP

>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   6.8e-11   1.7e-07       1     114 []     704     804 ..     704     804 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 6.8e-11
                 EEEEE-TT-EEEEE--GGG-EEEEEEEEES-EEEEEE-GGGHHHHH..HHHHHHHHCCSTTGCCTTTCEE-HHHHHHTT---EEEEE-TT-EEEE-TT- CS
        JmjC   1 wlylgmpksttpwhiedqglySinylhfgapkvWyiipeekkekle..kvlskknskeqpdllrhkstlispkqlekegipvyrfvqkpgefVfvfpga 97 
                 ++++++ +++t++h++  g++ + y++++++k+ ++ip+e+k+  +  + ++          ++h + l + +        + r+   +g+++ +++g+
  KKY20122.1 704 YCLMSVADCYTDFHVDFGGSS-VYYHIVKGKKTFFFIPPEEKNIRQyeDWCNS--------GQQHANFLGDLCSE------CRRVDLSEGDTMLIPAGW 787
                 6899************99888.******************9976552133333........35555555444332......55688899********** PP

                 EEEEEESSSEEEEEEEE CS
        JmjC  98 yHsvfnlgfniaeavnf 114
                 +H+v++  +++ +  nf
  KKY20122.1 788 IHAVWTPEDSLVIGGNF 804
                 ******99998887776 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   7.0   2.5e-11   6.3e-08       2      51 ..     403     460 ..     401     461 .. 0.88
   2 ?   -4.2   0.1       6.4   1.6e+04      46      50 ..     767     771 ..     765     780 .. 0.65
   3 ?   -1.8   0.3       1.2     3e+03       2       7 ..    1087    1092 ..    1081    1105 .. 0.65
   4 ?   -1.9   0.4       1.3   3.3e+03      17      23 ..    1174    1180 ..    1165    1189 .. 0.70

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 2.5e-11
                 BTTTTS........TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   2 CavCkk........ksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 C  C++        ++ + ee++ C+gC++w+H  C+++++e+e ++ ++++C+ C++
  KKY20122.1 403 CGKCNQtqlivadvDQGATEEWIECNGCNKWYHYFCVDLKDEREVQSIDKFICSDCEP 460
                 7777777788776667779***********************9999999*******85 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 6.4
                 STTTH CS
         PHD  46 CekCk 50 
                 C++C+
  KKY20122.1 767 CSECR 771
                 44443 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.2
                  BTTTTS CS
         PHD    2 CavCkk 7   
                  C+vC+k
  KKY20122.1 1087 CDVCRK 1092
                  555555 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.3
                  EETTTSC CS
         PHD   17 qCdgCkr 23  
                   Cd+C++
  KKY20122.1 1174 ACDECRK 1180
                  6888876 PP

>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.4e-08   3.6e-05     137     235 ..     707     794 ..     629     816 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.4e-08
     Cupin_8 137 lGnsasvsslHkDh..yeNlycvvrGrKkftLfpPsdapflyeaslsptedgtvvssvdveepdlekfprlkda.kkalevtlnaGevLylPalWfHeV 232
                 ++ ++  + +H D       y +v+G+K f ++pP++ +  + ++           + +     +++ + l d  +++ +v+l +G+++ +Pa+W H V
  KKY20122.1 707 MSVADCYTDFHVDFggSSVYYHIVKGKKTFFFIPPEEKNIRQYED-----------WCNSG---QQHANFLGDLcSECRRVDLSEGDTMLIPAGWIHAV 791
                 5666677889999988888999*************9876544444...........55544...44445455544559********************* PP

     Cupin_8 233 ksl 235
                  + 
  KKY20122.1 792 WTP 794
                 754 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.1   7.9e+03      40      51 ..      14      25 ..      13      27 .. 0.86
   2 ?   10.4   0.0   0.00015      0.38      75     107 ..     757     797 ..     723     813 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.1
                E.TTEEEEEEEE CS
     Cupin_1 40 lepgglllPhyh 51
                +++ggl++P+y+
  KKY20122.1 14 TTQGGLRPPRYT 25
                589*******98 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00015
                 S..........EEEEEE.EETTEEEEE-TT-EEEEEEESSSSE CS
     Cupin_1  75 g.........nrdfhkk.lreGdvfvvPaglvhfqynsgdepa 107
                 +          +  +++ l+eGd++ +Pag++h++   +  + 
  KKY20122.1 757 QqhanflgdlCSECRRVdLSEGDTMLIPAGWIHAVWTPE--DS 797
                 044444444335556667****************99884..33 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   1.1      0.15   3.9e+02      18      35 ..     426     443 ..     404     447 .. 0.78
   2 ?   -1.0   0.3      0.78     2e+03      20      26 ..     767     773 ..     753     776 .. 0.60
   3 ?   12.6   4.0   4.3e-05      0.11       2      16 ..    1086    1100 ..    1085    1107 .. 0.86
   4 ?   11.5   4.8   9.9e-05      0.25       1      13 [.    1173    1185 ..    1173    1191 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.15
                 SS-HHHHHCT.HHHCCCCT CS
     Zn_clus  18 PaCsnCkkln.leCtfyse 35 
                 + C  C k+  + C++ ++
  KKY20122.1 426 E-CNGCNKWYhYFCVDLKD 443
                 3.*******999**97765 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.78
                 -HHHHHC CS
     Zn_clus  20 CsnCkkl 26 
                 Cs+C+++
  KKY20122.1 767 CSECRRV 773
                 8888876 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 4.3e-05
                  S-HHHHHCT---STS CS
     Zn_clus    2 aCdnCrkkKvKCdak 16  
                  aCd Crk++++C  k
  KKY20122.1 1086 ACDVCRKRRIRCRHK 1100
                  9***********975 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 9.9e-05
                  SS-HHHHHCT--- CS
     Zn_clus    1 haCdnCrkkKvKC 13  
                  +aCd+Crk K++C
  KKY20122.1 1173 RACDECRKSKRRC 1185
                  69*********** PP

>> Elf1  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.9   0.00011      0.28       8      64 ..     390     443 ..     383     454 .. 0.80
   2 ?   -0.1   0.3      0.37   9.5e+02      12      42 ..    1075    1104 ..    1065    1108 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
        Elf1   8 kkrkkkkkkklptkFdCpfCnheksvevkldkkekiaevsCkvCgesfetkvnalse 64 
                 +   + +kkk  t+  C  Cn+++ +  ++d+      ++C+ C++ +++++  l++
  KKY20122.1 390 T---RPRKKKATTESICGKCNQTQLIVADVDQGATEEWIECNGCNKWYHYFCVDLKD 443
                 2...223344789999******************************99887776665 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.37
        Elf1   12 kkkkkklptkFdCpfCnheksvevkldkkek 42  
                   k++   p++  C +C +   ++++ + +++
  KKY20122.1 1075 PKSSGLGPKRVACDVCRKR-RIRCRHKDEDQ 1104
                  4445556888899999988.89998887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1386  (0.0773049); expected 358.6 (0.02)
Passed bias filter:                      623  (0.0347482); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.25u 0.36s 00:00:01.61 Elapsed: 00:00:00.58
# Mc/sec: 8009.86
//
Query:       KKY20216.1  [L=522]
Description: putative long-chain fatty acid [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-47  161.8   0.0    3.1e-47  161.1   0.0    1.2  1  AMP-binding    AMP-binding enzyme
    7.8e-05   23.6   0.0    0.00019   22.4   0.0    1.7  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.1   0.0   3.5e-51   3.1e-47      56     422 ..       5     383 ..       3     384 .. 0.80

  Alignments for each domain:
  == domain 1  score: 161.1 bits;  conditional E-value: 3.5e-51
                  SSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSC CS
  AMP-binding  56 nspewvvallailkaGavvvplnptltaeelayiledseakvliatvdsel.leklleaaakleavklvivldadellkeeelkeeeeseekaekpee 152
                  n+  +++++la++++Ga+++ +n +l+   l + +e+s ++++i  vd+   ++  +e++++    ++  ++   ++  +  + ++  ++++ +    
   KKY20216.1   5 NCEFFIFLWLALWSLGAAPAFINYNLSGSSLVHSIEASTSRLVI--VDQMIeANFTDEVRSE---LSSFQIIPFTSAVAT--MISTLRPYRAPD-S-V 93 
                  7778999*************************************..8776644444444443...344445554444444..223333333332.3.3 PP

                  CCS-BTTSEEEEEEE--SSSS-EEEEEEH.HHHHHHHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHH CS
  AMP-binding 153 eeelkpddlayiiYTSGTTGkPKGVmlsh.rnlvanvaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpkllleli 249
                   + +k++++a++iYTSGTTG PK +++   + ++ ++     ++  +l+++d++++ +p++h+ +  ++ +++l +G+t vl ++++ ++   +++ i
   KKY20216.1  94 RHVAKAKTPALLIYTSGTTGLPKPAVVGWwKPYIGSIFV---KNWLSLERSDRFYTAMPFYHSSASLFGFIATLGAGCTFVLGRRFSLTK---FWREI 185
                  44799***********************97777766444...445668889************9999*****************999844...45*** PP

                  HHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT.-SEEEEESS-EBHHHHHHHHHHHTC.EEEEEEEEGGGSSECEE....CHCTTTCTSTTS-BE CS
  AMP-binding 250 eklkvtviagvPrvleallesgalkaakkakdlss.lrlvllggeplspellrffralfge.evlegYGlTEttgvvtv....lpleedkkklgsvGk 341
                  ++ ++t+i++v + l++ll++++ +      d ++ +rl  + g+ l+p+++ +f+ +f   ++ e Y  TE t  +++    ++  +    lg++G 
   KKY20216.1 186 RESRATIIQYVGETLRYLLSNPPSD-----LDTQHnVRL--AFGNGLRPDIWNQFKTRFAIpTIAEFYTATESTSGFFNlstnDYSAGAIGALGTIGS 276
                  ********************86444.....245555665..78****************9999*************9555556666777778999999 PP

                  E-TTEEEEEE..-TTTSCBEE...........TTSEEEEEEEET........TS-SEBTT-HHHHHHHEEE....TCC.EEEEEEEEEEETTSEEEEE CS
  AMP-binding 342 plpgvevkiv..Deetgepvp...........dgeeGellvrgp........gvmkgYlkkpeataeafds....egr.wlrTGDlgrldedGyleiv 413
                  ++  +   i+  D +t+ep++           +g+ Ge l+             + gYl++++a + ++++    +g+ w+ TGDl ++d +G+ ++ 
   KKY20216.1 277 VISRNTFSIIqlDLATEEPLRdprtglcllyaPGQIGEGLFNVSdvpereptERFNGYLNNEKASSAKLITdvlkKGDvWYCTGDLMTRDSEGRTFFS 374
                  999777777667999*****9889999999999999995543321233333669********99999999779954888******************* PP

                  EECCCEEEE CS
  AMP-binding 414 gRkkdlikl 422
                  +R+ d++ +
   KKY20216.1 375 DRIGDTFRW 383
                  ******987 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.1e-08   0.00019       1      75 [.     392     485 ..     392     488 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.1e-08
                    HHHHHHHSSTTEEEEEEE-----.TTS---EEEEEE--......----.............HHHHHHHHHHH.HT-TTTS-SEEEE-S---B-TTS CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpde.vkGealvafVvlkd......gsea.............leeeLkahvrk.elgpyavpkkvvfvdelpktrsG 75 
                    ev ++l + pa+aea V+G+  +  +G+  +a +v kd         +             + + L  ++++  l++ya p  ++++++ ++ r+G
     KKY20216.1 392 EVAAVLGRFPAIAEANVYGIEIPnHDGRPGCAAIVFKDptlsssS--SsssssssssqiesIMQSLSTYLKTsGLPTYAIPVFIRILEDHEMDRTG 485
                    7889*******************99**99******9873444330..134556677767778888888885569*************875555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.51
# Mc/sec: 3062.31
//
Query:       KKY20217.1  [L=444]
Description: putative transcription factor cys6 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00087   18.2   1.1    0.00087   18.2   1.1    2.0  2  Fungal_trans_2  Fungal specific transcription factor domain
  ------ inclusion threshold ------
       0.13   12.5   0.1       0.33   11.2   0.1    1.7  1  LRR_adjacent    LRR adjacent


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   1.1   9.7e-08   0.00087       4      86 ..       7      89 ..       4     115 .. 0.75
   2 ?    1.3   0.6     0.013   1.2e+02     216     329 ..     176     302 ..     155     322 .. 0.62

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 9.7e-08
  Fungal_trans_2  4 dyyldnvapllspvpessnpfrkvllplalsnkallhallalsafhlqskgpkds.lereakrykslalkelqealaelsstls 86
                    +y+ ++ a  ls ++++   + k +l++ + ++a+ h+l+a++++h + ++++    ++ +++ ++ +l++ ++a++ l+ + +
      KKY20217.1  7 QYFQERAAVELSEYHDA-PFWNKQVLQVSHLHPAVRHCLVAIASLHESLHQGQGLsASSLMNKEMTFSLQQYNKAINLLTVHWR 89
                    55555555555544443.568999**********************966666665667777777777**********9999877 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.013
  Fungal_trans_2 216 d...seleplsileeaseleqrllswkprssdlepdldeterasslskdl.telfrlaaliylyrlvlglpps....spevqelvkkllellell 302
                     +   s++++++ ++ +s++ + l++w  + +++ +++++ ++ +  + ++  ++ + +a i  y+l ++l+++    +p +  +v++    l+l 
      KKY20217.1 176 QlllSSTDTTARHKILSKITRNLRRWYTTFDTFLTQSRHRHDSNFQRASItVKIHATCAVILPYTLASNLETTfdrfTPQLDFIVAESQRFLSLD 270
                     24466788888899999999999999999888776666555544444456244455555555578989999888666555555555555544443 PP

  Fungal_trans_2 303 psspvaiasLlW........plFiaGceavdeddR 329
                        +     +l+        pl  ++c + d+ +R
      KKY20217.1 271 HRPHS---QILFtfdlgiipPLYLVACRSRDPRLR 302
                     32222...222222444444666666666666555 PP

>> LRR_adjacent  LRR adjacent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   3.7e-05      0.33      10      46 ..      96     132 ..      93     135 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.7e-05
                   STTEEEETTEEEEE-SST-SEEEEEEEEEEEETTEEE CS
  LRR_adjacent  10 SnnGtYadpnitWnlesttsevsYtFsqkitigkita 46 
                   S nG+Y d +++ +l++  + ++Y++s+ i    + +
    KKY20217.1  96 STNGSYFDEDVAASLDKIMQRLQYQYSTFIEAEDTVS 132
                   89**************************998776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 2713.37
//
Query:       KKY20218.1  [L=586]
Description: putative thioredoxin-like protein 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-41  141.5   0.1    5.6e-41  140.3   0.1    1.6  1  PITH           PITH domain
    1.4e-21   76.4   0.0    2.6e-21   75.5   0.0    1.5  1  Thioredoxin    Thioredoxin
    5.5e-05   22.7   0.1    0.00013   21.4   0.0    1.6  2  OST3_OST6      OST3 / OST6 family, transporter family
     0.0001   22.7   0.2    0.00041   20.8   0.2    2.0  1  Thioredoxin_2  Thioredoxin-like domain
    0.00073   19.8   0.0       0.12   12.8   0.0    2.8  3  Thioredoxin_8  Thioredoxin-like
     0.0016   18.2   0.0      0.003   17.3   0.0    1.4  1  Thioredoxin_9  Thioredoxin


Domain annotation for each model (and alignments):
>> PITH  PITH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.3   0.1   1.9e-44   5.6e-41       2     152 .]     408     569 ..     407     569 .. 0.90

  Alignments for each domain:
  == domain 1  score: 140.3 bits;  conditional E-value: 1.9e-44
        PITH   2 yqyIdlkkveclNese.egsvkkvlkksweerldekk.yleSdaDeqLlihipFtqsvklksllikstkk......eeeesaPktiklfkNrkkkldFd 92 
                 +++Id+k++e+lN+++  gsv+++++ + ++++++kk ++eSd+DeqL++++pF++++k++sl i s+ +      +ee+++Pktiklf+N++++l+F+
  KKY20218.1 408 TDQIDIKGLELLNCDSsFGSVRTLFDATAPSKKEDKKdWIESDTDEQLMLYVPFQSTLKVHSLYITSH-AlassddDEEPMRPKTIKLFINKPHILGFE 505
                 79***********8886899******999777765556***************************775.36999999999******************* PP

        PITH  93 da.se.ptqeielseed.e.eketvelplrfvkfqnvssLtlffednnegedvtridyiglkGe 152
                 +a +  +tq+++l+++d + +++t++++lrfvkfqnv+sL++f+ d ++  ++ rid+++++Ge
  KKY20218.1 506 EAeDVpETQTMTLASRDwDpKSGTAKVELRFVKFQNVTSLVMFVVDGDGTREKIRIDRVRIVGE 569
                 **54359999999866553488899*********************9999*************7 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.0   8.8e-25   2.6e-21      25     103 .]     284     363 ..     245     363 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.5 bits;  conditional E-value: 8.8e-25
                  EE-TTSHHHHCHHHHHHHHHHHCTT..TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHHHHH CS
  Thioredoxin  25 FyApwCghCkalaPeleklaeelkd..kvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaaflkk 103
                   yA+wCg+Ck++aP +e+l+ +l+   k+++ ++++d++++la+ y+v+++Pt+++fkn +++++++ga++ +kl + +kk
   KKY20218.1 284 VYADWCGPCKQIAPIYEQLSAQLTRpnKITFTRINTDKQQELAAAYGVRALPTFMIFKNARTIQTLTGAEP-QKLSQAIKK 363
                  6**********************9999********************************************.999999875 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   4.5e-08   0.00013      46     109 ..     289     347 ..     274     371 .. 0.84
   2 ?   -3.2   0.0       1.3     4e+03     126     156 ..     440     470 ..     432     476 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 4.5e-08
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkgpk 109
                 C +C++++p +e+++ + ++      +k+ F +++ d+ +++ + +g++ +P +++f+ + + +
  KKY20218.1 289 CGPCKQIAPIYEQLSAQLTRP-----NKITFTRINTDKQQELAAAYGVRALPTFMIFKNARTIQ 347
                 *******************99.....7******************************9965444 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.3
   OST3_OST6 126 aealakfisertgvkirikrppnyskiiita 156
                  e+  ++i++ t++++ ++ p++ +  + ++
  KKY20218.1 440 KEDKKDWIESDTDEQLMLYVPFQSTLKVHSL 470
                 5666799999999999999999877666555 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.2   1.4e-07   0.00041      14     103 ..     286     356 ..     283     361 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.4e-07
  Thioredoxin_2  14 dpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPt.ivfldgkeivarlpGyvpae 103
                    +++C+ Ck++    ++l + + +      +p+ ++ +++i ++k++           ela +ygvr++Pt ++f +++  + +l+G+ p++
     KKY20218.1 286 ADWCGPCKQIAPIYEQL-SAQLT------RPN-KITFTRINTDKQQ-----------ELAAAYGVRALPTfMIFKNAR-TIQTLTGAEPQK 356
                    57788888877777777.33333......444.6677777777766...........7************77799999.77899**98664 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.9   8.5e+03       6      25 ..      99     118 ..      99     133 .. 0.68
   2 !   12.8   0.0   3.9e-05      0.12       9      48 ..     285     324 ..     283     324 .. 0.94
   3 !    9.1   0.0   0.00055       1.7      63      93 ..     314     344 ..     308     346 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.9
                    EEE--SSSHHHHHHHHHHHH CS
  Thioredoxin_8   6 Lyfgaswcppckaftpklke 25 
                    +yf+a++ p+ + +++ l +
     KKY20218.1  99 FYFAATNTPKNRGVLQCLPQ 118
                    59999999999888776655 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 3.9e-05
                    --SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HH CS
  Thioredoxin_8   9 gaswcppckaftpklkelyeklkkkkkveivyvsldkkee 48 
                    +a+wc pck++ p   +l+ +l  ++k+ +  ++ dk++e
     KKY20218.1 285 YADWCGPCKQIAPIYEQLSAQLTRPNKITFTRINTDKQQE 324
                    79*********************9************9876 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00055
                    E.EE-TT-HHHHTT-S--TT-SEEEEE-TT- CS
  Thioredoxin_8  63 svpfddkkrnklkkkynvkaiPtlvvldkng 93 
                    + + + +k+++l+  y+v a+Pt+++ ++ +
     KKY20218.1 314 FTRINTDKQQELAAAYGVRALPTFMIFKNAR 344
                    56678899******************98765 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     1e-06     0.003      50     125 ..     286     361 ..     284     366 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1e-06
                    -TT-HHHHHHHHHHHHHHHH-...TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEESS-HHHHH.. CS
  Thioredoxin_9  50 edwCgDaavnvPvlakiaeln...pnievkillrdenlelmdqyltngaraiPtliildeegeelgvwgerPaevqelv 125
                    +dwCg + ++ P+ ++++ +    ++i+++ +  d+++el   y   g ra Pt++i++++ +  +  g  P+++ +++
     KKY20218.1 286 ADWCGPCKQIAPIYEQLSAQLtrpNKITFTRINTDKQQELAAAY---GVRALPTFMIFKNARTIQTLTGAEPQKLSQAI 361
                    79*************99865412247888888888888888888...99******999988555556788888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 3729.13
//
Query:       KKY20219.1  [L=634]
Description: putative mfs multidrug [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-29  103.6  15.1      1e-29  103.6  15.1    1.8  2  MFS_1     Major Facilitator Superfamily
    1.3e-06   27.5   3.7    1.3e-06   27.5   3.7    1.7  2  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6  15.1   1.1e-33     1e-29      31     353 .]     148     575 ..     127     575 .. 0.85
   2 !   15.0  13.0   9.9e-07    0.0088      24     166 ..     451     607 ..     437     627 .. 0.78

  Alignments for each domain:
  == domain 1  score: 103.6 bits;  conditional E-value: 1.1e-33
       MFS_1  31 pseigllltlyalgaavaslplGrlsd..rfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpk.eergraigl 125
                  s++g+l + +a++++ +++++Gr +d  rfGr+rvl++gl+++++++l + f + ++   +++rvl G+   + + ++ ++i+++ ++ + ++ra+ l
  KKY20219.1 148 SSQAGMLSASFAAAQFCTAVLWGRAADspRFGRKRVLMVGLTGTFISCLGMGF-AKSFkQAVFFRVLGGAV-NGNVGVMRTMISEIIKEkKFQSRAFLL 244
                 47899**********************999*****************777779.56666************.58888999********999******** PP

       MFS_1 126 lsagfslGailgpllggllasslg.........................Wravfyilaivsllafvlfllllpeepperkrkspkeee........... 188
                 l ++f++G+i+gp+ gg+la+ +                          ++++ ++ a++ l+af+ +ll l e++p  k k+++ ++           
  KKY20219.1 245 LPMCFNIGVIIGPMMGGFLAEPVTsipalfgpdstfggkdgvhwlktfpYSLPNLFSALIILIAFISVLLGLDETHPILKYKTDWGRKigrsifklclr 343
                 ********************76667**********************999999***********99766777777777777777777799999999999 PP

       MFS_1 189 .........................................kgtgpaplvp..........awkallkdpvlwillialllfffgfsg....lltllpl 232
                                                           +       +           + ++++++vl+ l++++ll+   +s+    ++++lp 
  KKY20219.1 344 gdkprylrldttiddstapssidletqphhantsssttparTQ-------EpphtissrkpTFCQIFTPNVLLTLFLHFLLAI-HISSfnalIFIFLPA 434
                 9999999999999999999999999888888887666665422.......13444445888999********97888888884.555524456666666 PP

       MFS_1 233 ..............ylqevlglsglllaglllallalvgail.allagrlsdrlgrrrrlllallllllaalglallavtssavllll.....vlvliG 311
                                +   lgl+    +gl+ a+++++g++l  ++  rl++ +g  +   ++l++  la+ ++ +l++  s++l+++     vl+ + 
  KKY20219.1 435 prsptpppqpqnllHFTGGLGLP-TSKVGLATAIIGFIGFPLqIFFYPRLHTLFGTLKCYRIFLPFSPLAYTLIPYLSLLPSTPLVIWpsltlVLA-LQ 531
                 77777777766655247777777.7999999*********9977777888899***************************9999999977653444.55 PP

       MFS_1 312 f.glgfvfpsllalasdla.ppeeagtasglfntagslggalgp 353
                 +    f+ p ++ l+++++ +p+  gt+ g++++++s+++ +gp
  KKY20219.1 532 ViSRTFALPGAIILVNNSCpSPQVLGTIHGVAQSVSSAARTIGP 575
                 5599999************5569*******************98 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 9.9e-07
       MFS_1  24 aedlgispseigllltlyalgaavaslpl.GrlsdrfGrrrvlllglllfalg.lllllfa..ss....lw.lllvlrvlqGlgagalfpagaaliadw 113
                 +  lg+  s +gl++++ ++  + +++++  rl + fG  +++ + l ++ l+ +l++ ++  +s    +w  l ++ +lq +   +++p++++l+   
  KKY20219.1 451 TGGLGLPTSKVGLATAIIGFIGFPLQIFFyPRLHTLFGTLKCYRIFLPFSPLAyTLIPYLSllPStplvIWpSLTLVLALQVISRTFALPGAIILVNNS 549
                 555777888899999997777777777775888888999999999999999995555555345333566777899999999999999999999999999 PP

       MFS_1 114 fpkeergrai.gllsagfslGailgpllggllasslg.....Wravfyilaivsllafv 166
                  p ++    i g++++ +s++  +gpl++g+ +  +g       av++++a+v+l++  
  KKY20219.1 550 CPSPQVLGTIhGVAQSVSSAARTIGPLVSGWAL-GVGlkdniVGAVWWAMAGVALVGWG 607
                 999777666669999999999999999999999.4446899988999999999998843 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   3.7   1.5e-10   1.3e-06      35     157 ..     141     259 ..     125     307 .. 0.78
   2 ?   -4.6   1.1      0.85   7.6e+03      52      95 ..     564     606 ..     558     612 .. 0.65

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.5e-10
                 --SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHH..HTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS CS
    Sugar_tr  35 sksksskeessvlsglivsiflvGaiiGslfagllgd..rfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiA 131
                 +    s+++ s++ g++ ++f + +++++++ g ++d  rfGRk +l+++ + ++i+ + +++ak   s+ + ++ Rvl G   G + v+ +m isEi 
  KKY20219.1 141 NL---SDATISSQAGMLSASFAAAQFCTAVLWGRAADspRFGRKRVLMVGLTGTFISCLGMGFAK---SFKQAVFFRVLGGAVNGNVGVMRTM-ISEII 232
                 33...3445678***********************99778*************************...*************887776666555.66666 PP

                 .-SCCHHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 132 .pkklRgalvslyqlaitfGilvaaif 157
                   kk  ++   l  ++  +G +++ ++
  KKY20219.1 233 kEKKFQSRAFLLLPMCFNIGVIIGPMM 259
                 133444555555555555555555554 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 0.85
                 HHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH- CS
    Sugar_tr  52 vsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaa 95 
                  s+ ++ ++iG l++g ++  +G k+ ++ a+  +++g +l ++
  KKY20219.1 564 QSVSSAARTIGPLVSG-WALGVGLKDNIVGAVWWAMAGVALVGW 606
                 4566667777777777.444567777777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.51
# Mc/sec: 3723.25
//
Query:       KKY20220.1  [L=645]
Description: putative fungal specific transcription factor domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-07   31.3   7.4    3.1e-07   30.4   7.4    1.5  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
      0.017   14.9   1.1      0.017   14.9   1.1    2.0  2  PSI_integrin  Integrin plexin domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   7.4   3.5e-11   3.1e-07       3      34 ..     221     251 ..     219     257 .. 0.91

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 3.5e-11
                 -HHHHHCT---STSSSS-HHHHHCTHHHCCCC CS
     Zn_clus   3 CdnCrkkKvKCdakkPaCsnCkklnleCtfys 34 
                 C++C+ k+++Cd+  P+Cs C++ +++C  y+
  KKY20220.1 221 CQSCKDKHRRCDKALPSCSTCIEIGSQCY-YM 251
                 ****************************9.54 PP

>> PSI_integrin  Integrin plexin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.3      0.48   4.3e+03       7      12 ..     219     224 ..     215     228 .. 0.71
   2 ?   14.9   1.1   1.9e-06     0.017       2      21 ..     230     250 ..     229     255 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.48
  PSI_integrin   7 ksCkeC 12 
                   k+C++C
    KKY20220.1 219 KNCQSC 224
                   577777 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.9e-06
  PSI_integrin   2 sCksa.ksCkeCiqsgpsCaW 21 
                   +C +a +sC+ Ci++g +C +
    KKY20220.1 230 RCDKAlPSCSTCIEIGSQCYY 250
                   7******************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 4151.20
//
Query:       KKY20221.1  [L=675]
Description: putative sphingolipid long chain base-responsive protein pil1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-127  425.1   0.2   1.5e-127  424.6   0.2    1.2  1  Pil1      Eisosome component PIL1
      7e-23   80.7   1.6    2.9e-22   78.7   1.6    2.1  1  Pirin     Pirin
    0.00037   20.1   1.4     0.0038   16.9   0.2    2.8  2  Cupin_2   Cupin domain
  ------ inclusion threshold ------
      0.086   12.2   1.5       0.16   11.4   0.9    1.6  1  FAM92     FAM92 protein


Domain annotation for each model (and alignments):
>> Pil1  Eisosome component PIL1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  424.6   0.2  3.4e-131  1.5e-127       1     263 [.       1     263 [.       1     265 [. 1.00

  Alignments for each domain:
  == domain 1  score: 424.6 bits;  conditional E-value: 3.4e-131
        Pil1   1 mnraysirsskastasesqteaspksstkskrlfslkslrsslrkqaaasfsPelarrLakLikseknlvraheaaarerksiakqlseWGedtdddvs 99 
                 m+r+ys+r+s+a+tas+ +t+++p+sstk++rlf+ +++++++rkq+a++f+P+la++L++L+k+ekn++r++e ++rer+++a+qls+WGe +dddvs
  KKY20221.1   1 MHRTYSMRQSRAPTASQLETPPPPTSSTKHGRLFGKSNFGHAFRKQTAGAFGPDLAKKLSQLVKMEKNVMRSMELVGRERMEVAQQLSLWGEACDDDVS 99 
                 8************************************************************************************************** PP

        Pil1 100 DvsDklgvllselgeledayadrldqsRatlKsirniEasvqpsRdkkekladeiaklkakepqserlvvlEqeLvraeaeslvaeaqlsnitReklke 198
                 Dv+Dklgvl++e+geled+++dr+dq+R+t+KsirniEasvqpsRd+k+k++d+ia+lk+kep+s+r+vvlEqeLvraeaeslvaeaqlsnitReklk+
  KKY20221.1 100 DVTDKLGVLIYEIGELEDQFVDRYDQYRVTIKSIRNIEASVQPSRDRKQKITDQIAQLKYKEPNSPRIVVLEQELVRAEAESLVAEAQLSNITREKLKA 198
                 *************************************************************************************************** PP

        Pil1 199 aytaefdaliEraeKlallarygkrLlellddspvtpGetrpaYdgaeatrqiladaedaLrewr 263
                 a+t++fdal+E++eKla++a+ygk+Llel+dd+pvtpGetr+aYdg+ea++ i++d+edaL++w 
  KKY20221.1 199 AFTYQFDALREHCEKLAIIAGYGKHLLELVDDTPVTPGETRAAYDGYEASKAIIQDCEDALTNWV 263
                 ****************************************************************7 PP

>> Pirin  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   1.6   6.5e-26   2.9e-22       7     107 ..     405     525 ..     399     526 .. 0.85

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 6.5e-26
                 GTCC...TTCCEECTCEECCEEESS.S.ETT.....EEEE..T-EEEEEEEBSEEEEEEEECSEEEEEETT...S-EE........EEETT-EEEEE-T CS
       Pirin   7 algk..aaelqsvdpFlfldefdpaelevge.....edvi..gagfpphphrgletvtylleGevehrDsl...Gnkg........virpGdvqwmtAg 85 
                 a+g+  + +l+++++F+f+++ dp++ ++g+     ed++  ++gfp+hphr+ e+ +y+l+G+++hrDs+   G++g        +++ Gdvq  t g
  KKY20221.1 405 ARGHadHGWLNTYHTFSFASYWDPRHEQFGSlrvlnEDRVapNTGFPTHPHRDAEIFSYILSGQLTHRDSMmkrGAEGkaskeqfyRMERGDVQFTTGG 503
                 45555689****************************99*999***************************974443333222333335789********* PP

                 T-EEEEEEE-SSSS-EEEEEEE CS
       Pirin  86 sGivhsEmneeeeesleglqlW 107
                 +Gi+hsE ne+++  +++lq+W
  KKY20221.1 504 TGIAHSEQNEHSTDWVHFLQIW 525
                 ********************** PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2   8.5e-07    0.0038       4      61 ..     443     514 ..     440     525 .. 0.76
   2 ?    0.7   0.1     0.096   4.3e+02      28      50 ..     628     649 ..     625     672 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 8.5e-07
                 EEETTEEEEEECSSSEEEEEEEEESEEEEEEC............TEEEEEETTEEEEE-TT..-EEEEEE-S CS
     Cupin_2   4 elppGesapshrHpgedeffyVleGegeltvd............geeveleaGdsvyfpag..tpHrfrNtg 61 
                 +++p++ +p h H++++ f y+l+G+++ +              ++ +++e+Gd+ ++  g    H   N+ 
  KKY20221.1 443 RVAPNTGFPTHPHRDAEIFSYILSGQLTHRDSmmkrgaegkaskEQFYRMERGDVQFTTGGtgIAHSEQNEH 514
                 689************************988445677777655555588888888888888744566666655 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.096
                 SEEEEEECTEEEEEETTEEEEE- CS
     Cupin_2  28 GegeltvdgeeveleaGdsvyfp 50 
                 G++++++dg+  +l++Gd +y+ 
  KKY20221.1 628 GKAKIRLDGR-EVLSEGDGAYVS 649
                 6666677766.677888877763 PP

>> FAM92  FAM92 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.9   3.5e-05      0.16      93     171 ..     111     191 ..      92     202 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.5e-05
       FAM92  93 everleakvveelktyetlvkskrddlklal.iardkevkrlrqleelkskfsadr..saaeselfkakmevsrtskeleei 171
                 e+  le + v+   +y   +ks r+ + +++  +rd++ k   q+ +lk k +        e el +a+ e   ++ +l +i
  KKY20221.1 111 EIGELEDQFVDRYDQYRVTIKSIRN-IEASVqPSRDRKQKITDQIAQLKYKEPNSPriVVLEQELVRAEAESLVAEAQLSNI 191
                 7789*******************96.66665169***************9998765468899******99877666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       982  (0.0547716); expected 358.6 (0.02)
Passed bias filter:                      762  (0.042501); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4561.57
//
Query:       KKY20222.1  [L=590]
Description: hypothetical protein UCRPC4_g04211 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1080  (0.0602376); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.53
# Mc/sec: 3349.96
//
Query:       KKY20223.1  [L=267]
Description: hypothetical protein UCRPC4_g04212 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.07   13.4   0.6       0.22   11.8   0.0    2.1  3  DUF2280   Uncharacterized conserved protein (DUF2280)


Domain annotation for each model (and alignments):
>> DUF2280  Uncharacterized conserved protein (DUF2280)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.39   6.9e+03      38      74 ..      32      69 ..      28      72 .. 0.62
   2 ?   11.8   0.0   1.2e-05      0.22      26      97 ..     100     172 ..      93     177 .. 0.88
   3 ?   -2.9   0.1      0.47   8.5e+03      83     101 ..     181     199 ..     179     201 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.39
     DUF2280 38 srqqvesydPt.kaagkdLskkwrelFeetRkaFledt 74
                 ++q ++y+P    a++     w++  ++ R + + ++
  KKY20223.1 32 FKNQPNNYQPPpAYAAEPTMIDWHKQHQKYRRQCQREV 69
                55666677764144566666677777777777776665 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 1.2e-05
     DUF2280  26 vkavkeefgvkvsrqqvesydPtkaagkdLskkw.relFeetRkaFledtaeipianravRLraLerlaekae 97 
                  ++vk+ f+++v + + e   P++ + ++L++ + ++l+ e   +F++dt++   a+r ++L    ++aeka+
  KKY20223.1 100 FRTVKDHFDITVWHSNTELPLPERLTLEELARDYpNHLYGEYLLRFMNDTSRKWTAKRIYKLLDPVAQAEKAS 172
                 578*******************************456999******************999977667777665 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.47
     DUF2280  83 avRLraLerlaekaekkkn 101
                 a R+r L+ + ++ e+ +n
  KKY20223.1 181 AKRMRYLDPVKRTRESANN 199
                 5677777777776666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1582  (0.0882369); expected 358.6 (0.02)
Passed bias filter:                      645  (0.0359752); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 1654.95
//
Query:       KKY20224.1  [L=1077]
Description: putative atp-depentend dna [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-59  201.1   3.4    8.1e-58  196.4   0.0    3.1  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
    2.1e-57  195.1   0.0    7.8e-57  193.2   0.0    1.9  2  UvrD_C           UvrD-like helicase C-terminal domain
    3.7e-31  108.4   0.3    3.1e-30  105.4   0.0    2.6  3  AAA_19           AAA domain
      1e-13   50.9   0.0    2.8e-13   49.5   0.0    1.9  1  UvrD_C_2         UvrD-like helicase C-terminal domain
    5.6e-09   36.0   0.0    0.00023   20.9   0.0    2.8  2  AAA_30           AAA domain
    3.5e-06   26.9   0.2      0.018   14.8   0.0    3.2  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.004   17.4   2.4        3.4    7.9   0.0    3.9  4  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.018   15.4   1.2      0.086   13.2   1.2    2.2  1  SET              SET domain
      0.039   13.6   0.6       0.24   11.0   0.0    2.5  3  AAA_12           AAA domain
       0.51   10.8   3.0       0.88   10.0   0.1    2.6  2  DUF5301          Domain of unknown function (DUF5300)


Domain annotation for each model (and alignments):
>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   1.3      0.67   1.2e+03     174     204 ..      30      64 ..       5     209 .. 0.62
   2 !  196.4   0.0   4.5e-61   8.1e-58       1     314 [.     276     536 ..     276     537 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.67
                    CHHHHHCHHHHHHHHHHHTTCCTTHHCHSS....T CS
  UvrD-helicase 174 lskskaeelrelvskakekqlspkelkkaf....e 204
                     +k+ a+ +++ +++  +k+++ +elk+a     e
     KKY20224.1  30 HAKREAKRMKAKMDDKLKKKTILEELKAARqrrkE 64 
                    33333333333333333333333333332222110 PP

  == domain 2  score: 196.4 bits;  conditional E-value: 4.5e-61
                    SSHHHHHHHHS-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHHCTT-HHHHHHHHHCTTSEEEE CS
  UvrD-helicase   1 lnpeqreaiaslggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRieealkkaeqessdderlrlalqnlseanisT 96 
                    ln+ q++a++s+++ + v+A +GsGKT++l++r+++l+++ ++ p +i++ TFT kAa+E++eR++ ++++ +                s++  +T
     KKY20224.1 276 LNNAQKDAVTSSSSILQVLAPPGSGKTKTLTARVAYLLTHYGYAPWDIICCTFTVKAAREMRERLRGLIGEGL---------------ESKLILGT 356
                    6999******************************************************************986...............489***** PP

                    HHHHHHHHHHHHHGGTTSHTTTEEECHHHHHHCCHHHHHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHCHHHHHHHHHHHT CS
  UvrD-helicase  97 lHsfcqkilkkeanrigldpnfrildeedeedlkqqellkelleksaddslnldkkkleklikelsksrnikkeelslskskaeelrelvskakek 192
                    +Hs+c+++l ++ n+igl ++f i+d+ d     + +++k++++   + +  +d + ++++                            +s  k +
     KKY20224.1 357 FHSICRRYLVRYGNKIGLPKGFGIADSAD-----SISIVKRVIK---RRKIGIDPSTARSR----------------------------ISHRKAR 416
                    *****************************.....9999999998...66678888888855............................2233333 PP

                    TCCTTHHCHSS..TSCSHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHHHSSEEEESSGGG-BHHHHHHHHHHHTTTTTE CS
  UvrD-helicase 193 qlspkelkkaf..ekasdlqkkiaeflkeyqeqkkeenalDfsdllhallelleeneelaealrerykeiliDEyQDTnkiQyrilkllasgheel 286
                     +s  e ++    +k s +q++++ ++ +y++++k  n+lD++dll+++lell++++e +++    ++ +liDE+QDTn +Q++++kl + +++ +
     KKY20224.1 417 GVSYDEDTPSRagNKCSVEQQQFRLVFTDYEDELKSTNLLDYDDLLLRCLELLQKHPECVSN----VQAVLIDEFQDTNTVQFELMKLFSCAKSRI 508
                    33333332222225679999************************************997765....678*************************** PP

                    EEEE-GGG--GGGGTB-THHHHHHHHHS CS
  UvrD-helicase 287 fmvGDpkQsIYgFRgAdielflkkkkdf 314
                    ++vGDp+QsIY+FR A++ ++l +++++
     KKY20224.1 509 TIVGDPDQSIYSFRAAEVANLLHMQRHY 536
                    **********************999876 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.73   1.3e+03     128     161 ..     386     419 ..     380     502 .. 0.79
   2 !  193.2   0.0   4.4e-60   7.8e-57       1     345 [.     542     905 ..     542     907 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.73
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 128 dkialkrilkrlvlgigkatveriseelkklgls 161
                 ++ ++kr++kr ++gi++ t++  +++ k +g+s
  KKY20224.1 386 SISIVKRVIKRRKIGIDPSTARSRISHRKARGVS 419
                 4556899999999999999998655666666655 PP

  == domain 2  score: 193.2 bits;  conditional E-value: 4.4e-60
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C   1 ivLekNyRStksLlkaankflenilnrralekekktvekgekivvleaeteeeEaekiaatikall...ekneklediavLvRsnkdadkiskaLkkeg 96 
                 i+Le+NyRS   +l  a++++e+ ++r+ +   k+t+  g   ++++ ++   Ea++i+ +i++l    +k  +++d  +L Rs + +++i+ a+ k g
  KKY20224.1 542 IHLEENYRSCGAILSSAQDIIEQDTSRPNK-RLKATHAYGSLPTFRRLPSAFAEASWIVIEIQRLIalsGKMLNYSDFVILLRSAALSRLIESAMGKAG 639
                 8********************999999322.3459*******************************9999999************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  97 ipfnvvdeekfFkreeikdilaylkllankqdkialkrilkrlvlgigkatveriseelkklglsltDfikedtleygeeFieliraleeknlelllkk 195
                 +p+++v++++fF+r e++ +l yl+ +  +q++ a+  +++ + +gig++t++ ++ee   + + l  f+++          +l + ++++  + l++ 
  KKY20224.1 640 VPYRMVGGFRFFDRVEVRILLDYLRTICQPQNNDAFLAVINVPARGIGDKTIKDLVEEADAAKIPLFTFVRDIIRSKRTSICKLRTRIKQNLAS-LVE- 736
                 **********************************************************************999999999999888888887775.333. PP

                 xxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxx RF
      UvrD_C 196 iektaeerqalvsky...adlfkelaeklaelkekseskrkkee.klenlreLysllkelekkeeeeeveek.................lneileiatL 273
                 i  ta e+++  +++   + l + l ekl   +   ++ r++ e ++ n++eL+++++++   +++ e+e+                  l+++l +++L
  KKY20224.1 737 IVFTAREKMTACASNsapKVLLQFLIEKLFYKEFIEKTYREDPEaRWTNVEELLAQAEDITSLAMTAESEALpaiegveqqesdggqeaLARFLANIAL 835
                 333333333333333000334455556654444334444433446*****************777777665599************************* PP

                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 274 seseleeskkk.ekipiiTiHqAKGlEFdvVflagleegtfPsyrskkekrleEEkRlfYVaiTRAkkrLfis 345
                 s++ + + +   ++++i+TiH+AKGlE++vVf+  l eg +P++r+++    +EE+Rl+YVa+TRA+  L++s
  KKY20224.1 836 SSEVQTDDDGSqQRVTISTIHAAKGLEWPVVFIPALYEGSIPHSRAEDT---DEERRLLYVAMTRAQGLLYLS 905
                 *99988877777******************************9997666...9******************98 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.3       4.2   7.6e+03      45      72 ..      25      51 ..      12      96 .. 0.66
   2 ?   -1.2   0.0       1.3   2.3e+03      43      75 ..     179     213 ..     168     246 .. 0.76
   3 !  105.4   0.0   1.7e-33   3.1e-30       1     146 []     280     522 ..     280     522 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.2
      AAA_19 45 illvaftgrAakelrerlaalgaeatTi 72
                  + a ++r ak+++ +++  +++ +Ti
  KKY20224.1 25 GWCEAHAKREAKRMKAKMDD-KLKKKTI 51
                55667778888888888854.3444444 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.3
      AAA_19  43 eeillvaftgrAakelrerlaalgae..atTiHrl 75 
                  ++ +v++t++   e+r++ +a++ +   +Ti + 
  KKY20224.1 179 SKVKCVTVTKQESTEIRTSSRAVKSNgvKKTISYS 213
                 68999***********9998887766556666655 PP

  == domain 3  score: 105.4 bits;  conditional E-value: 1.7e-33
      AAA_19   1 qreavealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.......atTiHrlal............... 77 
                 q++av ++++++l v+a+pG+GKT++l+++va+l+   g +p +i++++ft +Aa+e+rerl++l +e         T+H++                 
  KKY20224.1 280 QKDAV-TSSSSILQVLAPPGSGKTKTLTARVAYLLTHYGYAPWDIICCTFTVKAAREMRERLRGLIGEgleskliLGTFHSICRrylvrygnkiglpkg 377
                 88999.9**********************************************************999******999****977*************** PP

      AAA_19  78 ..............................................................................ldfddlltealelleeaeeek 98 
                                                                                               ld+ddll   lell++  + +
  KKY20224.1 378 fgiadsadsisivkrvikrrkigidpstarsrishrkargvsydedtpsragnkcsveqqqfrlvftdyedelkstnlLDYDDLLLRCLELLQK--HPE 474
                 *************************************************************************************999999775..556 PP

      AAA_19  99 klqeeellivDEfqdvdelqyrLlkallgekkklllvGDpdQliyvfr 146
                  + + +++++DEfqd++ +q++L+k     k ++++vGDpdQ+iy+fr
  KKY20224.1 475 CVSNVQAVLIDEFQDTNTVQFELMKLFSCAKSRITIVGDPDQSIYSFR 522
                 675666*********************999999*************97 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   1.6e-16   2.8e-13       2      51 ..     850     904 ..     849     905 .. 0.86

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 1.6e-16
    UvrD_C_2   2 ayaltihkaQGsefpaVivfdpdlaaarmgel.....rrrlLYtavTRAreklil 51 
                 ++++tih a+G+e+p+V++ + ++ + ++++       rrlLY+a+TRA+  l+l
  KKY20224.1 850 VTISTIHAAKGLEWPVVFIPALYEGSIPHSRAedtdeERRLLYVAMTRAQGLLYL 904
                 6899***************998866655555566888****************98 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.3e-07   0.00023       2      66 ..     276     340 ..     275     363 .. 0.80
   2 !   11.8   0.0   8.1e-05      0.15      86     174 ..     475     566 ..     446     584 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.3e-07
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkal.reaweaag...grviglAptgkaAkvLaeel 66 
                 ln+ Q++av    ts+  +  + +p+G+GKt +l+a  + ++++ g    ++i ++ t kaA++++e l
  KKY20224.1 276 LNNAQKDAV----TSSSSILQVLAPPGSGKTKTLTARvAYLLTHYGyapWDIICCTFTVKAAREMRERL 340
                 667777777....5555688899**********999825555555988899***************965 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 8.1e-05
      AAA_30  86 lepg.tllivDEagmvdtkqlaallkaaekagakvilvGDerQl.asVeaGgvlrdlvea...agigtaeLtevvRqkeseeraaalalregda 174
                 + ++ + +++DE   ++t q+ +l+k  + a+ ++ +vGD++Q   s  a +v ++l  +    ++++++L+e++R    ++ + a+++ e d+
  KKY20224.1 475 CVSNvQAVLIDEFQDTNTVQF-ELMKLFSCAKSRITIVGDPDQSiYSFRAAEVANLLHMQrhyVDTNVIHLEENYRSCG-AILSSAQDIIEQDT 566
                 4444499******99999887.47788888888**********636888888888775442223559999999999843.44444444444444 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.51   9.2e+02       5      17 ..     295     307 ..     292     315 .. 0.80
   2 !    7.7   0.1    0.0015       2.7      57     115 ..     473     532 ..     448     575 .. 0.76
   3 !   14.8   0.0   9.9e-06     0.018     170     231 ..     838     903 ..     809     905 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.51
  Viral_helicase1   5 GvpGcGKStlirk 17 
                      + pG+GK++ +  
       KKY20224.1 295 APPGSGKTKTLTA 307
                      569*****98865 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0015
  Viral_helicase1  57 lvkstkgkililDEylllhaGyilllaalska..klvilfGDplQipfhsrnasfllahlp 115
                        +  + + +++DE++  ++ +++l ++l ++  + + ++GDp Q+ ++ r+a++ +  + 
       KKY20224.1 473 PECVSNVQAVLIDEFQDTNTVQFEL-MKLFSCakSRITIVGDPDQSIYSFRAAEVANLLHM 532
                      4444457899*******99755555.555554236899************99977665544 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 9.9e-06
  Viral_helicase1 170 ltftqalkealgvrevttvhevqGltfdkVtlvllketdlelis.......esrenllvAlTRhrkslv 231
                      + +t ++ ++ +v+ ++t h + Gl++++V +  l e +  +         e+r  l+vA+TR+   l+
       KKY20224.1 838 EVQTDDDGSQQRVT-ISTIHAAKGLEWPVVFIPALYEGS--IPHsraedtdEERRLLYVAMTRAQGLLY 903
                      34455555666666.*****************9986654..333467778878***********88765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       4.5   8.1e+03      37      65 ..      25      60 ..       7      85 .. 0.47
   2 !    7.9   0.0    0.0019       3.4       4     103 ..     287     387 ..     284     400 .. 0.63
   3 !    6.0   0.1    0.0076        14      57     114 ..     439     500 ..     422     516 .. 0.74
   4 ?   -0.3   0.0      0.67   1.2e+03      76     104 ..     941     969 ..     924     988 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.5
      AAA_22 37 e.....erpevvfvtlpsst..sskdllrellralg 65
                      +++e  +++++ +   + k++l+el  a +
  KKY20224.1 25 GwceahAKREAKRMKAKMDDklKKKTILEELKAARQ 60
                134443222222222222222255555555555544 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0019
      AAA_22   4 tagilvvtGesGtGKTtll.rrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka...erlsseellealeqalrarav.iellii 97 
                 + +il v +++G+GKT +l +r+++ l+ + +   ++ +++ +t +++   ++++++l   +g++l++    +   + ++++l ++ ++ +  +++ i 
  KKY20224.1 287 SSSILQVLAPPGSGKTKTLtARVAYLLTHYGY---APWDIICCTFTVKA-AREMRERLRGLIGEGLESkliLGTFHSICRRYLVRYGNKIGLpKGFGIA 381
                 56788999********7651667777654444...46677777777777.7788888888888777773333333333334444444444446666666 PP

      AAA_22  98 DEaqhl 103
                 D a+ +
  KKY20224.1 382 DSADSI 387
                 666665 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0076
      AAA_22  57 lrellralglelka.erlsseellealeqalrarav....ielliiDEaqhlrseealeeLrs 114
                 +r ++ ++++elk+ + l+ ++ll ++ + l+++      +++++iDE+q   +  ++e  + 
  KKY20224.1 439 FRLVFTDYEDELKStNLLDYDDLLLRCLELLQKHPEcvsnVQAVLIDEFQDT-NTVQFELMKL 500
                 5667777777777778889999999999999999999999***********9.4444443322 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.67
      AAA_22  76 eellealeqalraravielliiDEaqhlr 104
                 +ell+ l++ lr+   +e  i++E+q+lr
  KKY20224.1 941 DELLRCLARSLRRELPREGTIVEEMQKLR 969
                 45556666666666667777*******96 PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.2   4.8e-05     0.086      53     134 ..      16     121 ..       4     149 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.8e-05
                 HHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTSX........XXHCCCCC..HCCCHEEEETEEEEEECCC................GTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxx..xxxxxxxxxxxxxxxxxxx................xxx RF
         SET  53 kelakasastllqklakdqkqaekedtdaalkasskaesdlna........skpeagaf..saiagysidaralksgnga................gpl 125
                 k+l++ +a++ +++ ak++++++k + d++lk++   e+ ++a        ++  +     s  a++++da+ + s  ++                 p+
  KKY20224.1  16 KRLQAQEAKGWCEAHAKREAKRMKAKMDDKLKKKTILEELKAArqrrkessMEDRP--DhsSKRARCALDAANQDSQVAQastnskkrrlsdddldLPV 112
                 7889999****************************999999966666664444444..345999******888888887799999999*********** PP

                 GGGCEEXSS CS
                 xxxxxxxxx RF
         SET 126 arflNHsCd 134
                 a  +N sCd
  KKY20224.1 113 AKKINISCD 121
                 ********5 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2       1.8   3.2e+03      84     149 ..     136     216 ..      85     225 .. 0.57
   2 ?   -1.3   0.0      0.77   1.4e+03      13      33 ..     536     557 ..     528     578 .. 0.79
   3 ?   11.0   0.0   0.00013      0.24     127     193 ..     835     903 ..     762     905 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.8
      AAA_12  84 ksyiNeeEaelvvklvekllkkgsee...............erkkigvitpYraqvellkkklkekeeeksekeievntvd 149
                 +++  ++  ++v+ +v++l      +                ++k+  +t  +++ + ++   ++ +++  +k+i+ ++v 
  KKY20224.1 136 SKVLKDNNGRTVLTTVDALAGYKIPKrsdrrgtsgskmekpLQSKVKCVTVTKQESTEIRTSSRAVKSNGVKKTISYSSVR 216
                 455555555555555555555444444555555555555555677777777777777777777766666555556666665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.77
      AAA_12  13 e.kekvvlLdtqYRmhpeIsrf 33 
                 + +++v+ L+++YR++ +I++ 
  KKY20224.1 536 YvDTNVIHLEENYRSCGAILSS 557
                 24678999********999875 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00013
      AAA_12 127 lkkklkekeeeksekeievntvdgfQGrekdviilslVRsn...ekkeigflkderrlNValTRAkskli 193
                 l+++++++++  s+++++++t+ +  G e+ v+++ +       +++     +++r l Va+TRA+  l+
  KKY20224.1 835 LSSEVQTDDD-GSQQRVTISTIHAAKGLEWPVVFIPALYEGsipHSRAEDTDEERRLLYVAMTRAQGLLY 903
                 4455554333.34567*******************999987674333344556667789******98775 PP

>> DUF5301  Domain of unknown function (DUF5300)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00049      0.88       9      59 ..      22      73 ..      14      94 .. 0.78
   2 ?   -0.5   0.4      0.92   1.7e+03       5      48 ..     173     219 ..     169     233 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00049
     DUF5301  9 kaeeiteievekkeketevkvtdkeeIkeilsilkka.kktkkeSvndqPnv 59
                +a+   e + +++ k+++ k++dk + k+il++lk a ++ k+ S++d+P+ 
  KKY20224.1 22 EAKGWCEAHAKREAKRMKAKMDDKLKKKTILEELKAArQRRKESSMEDRPDH 73
                55566677778888999999*****************667777889****44 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.92
     DUF5301   5 ielPkaeeiteievekkeketev...kvtdkeeIkeilsilkkakkt 48 
                 +e P +++++ ++v+k+e+++     +  +++ +k+ +s  +  ++ 
  KKY20224.1 173 MEKPLQSKVKCVTVTKQESTEIRtssRAVKSNGVKKTISYSSVRNSR 219
                 56678899999999999887655334555555666666655555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1077 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1491  (0.0831614); expected 358.6 (0.02)
Passed bias filter:                      636  (0.0354733); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.53
# Mc/sec: 6075.46
//
Query:       KKY20225.1  [L=496]
Description: putative aldehyde dehydrogenase family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.4e-148  493.6   0.0   5.4e-148  493.3   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  493.3   0.0    3e-152  5.4e-148       6     461 ..      19     474 ..      14     475 .. 0.98

  Alignments for each domain:
  == domain 1  score: 493.3 bits;  conditional E-value: 3e-152
                 S.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH..HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH CS
      Aldedh   6 s.etievinPatgeviakvpaataedvdaavaaAkeafk..awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryya 101
                 + e++ vinPat+ +ia++ a  ++ v+++v+++   f+  +w++ +a++R ++L+kaa+l+++r  e+++le+++tG p++e+ra+++++ ++l+y+a
  KKY20225.1  19 ApESLVVINPATELPIATIDATPRKLVNEIVSKSLTNFRdgSWSRADASDRFAVLAKAASLIRARIPEFVDLEVRQTGRPVREMRAQLARIPEWLEYFA 117
                 336799*********************************989********************************************************* PP

                 HHHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHH CS
      Aldedh 102 elaeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgeal 200
                 +la+  eg v+p +    ++ +r PlGvv++ItPWN Pll+a++k+ +alaaGN+v++KP+e +pls+l++  lf++aglP+g l++++g+g+++g+ l
  KKY20225.1 118 GLARVHEGAVTPFKGPVVNTLTRLPLGVVAQITPWNHPLLIATKKIGAALAAGNVVIVKPSELAPLSVLKMGALFKKAGLPDGTLQIISGYGRDTGKFL 216
                 *************999*********************************************************************************** PP

                 HH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS CS
      Aldedh 201 vehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvg 299
                 +e+p+++k+ +tG+ ++ + ia +a++++ ++t+ElGGk+p+ ++++ D+++av+a+++++f+ +GQ+C+++srll++++iydef++ l +++k+l+vg
  KKY20225.1 217 CENPHLAKIDLTGGLATYKAIAPSAGESMIPITAELGGKAPVCIFPSMDVEQAVKAALFASFIASGQTCVTGSRLLIHNDIYDEFTKLLEQRTKALRVG 315
                 *************************************************************************************************** PP

                 -TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESE CS
      Aldedh 300 dpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLa 398
                 dp +++t++G++is+a+++++ ++v++a++eg k+l+Gg+  ++ ++kgyf+ePt+++ +++++++ ++E+FGPV++++++++e+e+i++aN t ++L+
  KKY20225.1 316 DPTNPQTQIGAVISKASVDRCSSFVSRAISEGGKVLCGGNP-TNVNNKGYFFEPTLIE-THSKSDLSCNEVFGPVIALLRCDSEDEIINVANGTSFALG 412
                 ***************************************64.7899***********9.7*************************************** PP

                 EEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEE CS
      Aldedh 399 agvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevkt 461
                 a+++t+d ++a+rvae++eaG v++N ++ +++++ p+gG+k+Sg+G+e+g+e++e yt++k+
  KKY20225.1 413 ASIWTQDFTQAHRVAEKIEAGIVWVNGHHLNDPSS-PWGGFKESGMGKENGREAYESYTKIKS 474
                 ***********************************.*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 3218.46
//
Query:       KKY20226.1  [L=586]
Description: putative ankyrin repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-14   52.8   0.4    6.6e-14   51.9   0.4    1.4  1  CorA           CorA-like Mg2+ transporter protein
     0.0026   16.7   0.1      0.004   16.1   0.1    1.2  1  7TM_GPCR_Srab  Serpentine type 7TM GPCR receptor class ab che
  ------ inclusion threshold ------
      0.012   15.9   0.5      0.024   15.0   0.5    1.4  1  DUF3021        Protein of unknown function (DUF3021)
      0.022   13.5   0.2      0.032   13.0   0.2    1.1  1  DUF2207        Predicted membrane protein (DUF2207)
      0.027   13.4   0.2      0.033   13.0   0.2    1.1  1  LptF_LptG      Lipopolysaccharide export system permease LptF
       0.14   11.6   0.4       0.29   10.6   0.4    1.4  1  MTABC_N        Mitochondrial ABC-transporter N-terminal five 


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.4   2.2e-17   6.6e-14     116     288 ..     325     505 ..     293     509 .. 0.66

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 2.2e-17
        CorA 116 ldeivdrlfellekleeeldeledel.edstkkeilrelaqlrrrlvklrralapnrevlk........rllakaddkllddedkeylrdlldelerll 205
                 l+++  +l+e+ + le+    +  e    +  k+i++el  +   l++ ++++  +++  k        ++++ +++ +   +  +  r +++e++  +
  KKY20226.1 325 LQSNQASLIEISRRLEDPSFSIGAETeLFRDIKDIIDELGCIDYILGRQEDVIQSLTRQRKsrslkivsEMVQERRNTWAGIA--KTARSVYNEIQAQM 421
                 55555555555555555555555555545555556666666665555554444444444432222222233332222222222..34666666666666 PP

        CorA 206 emlealrerleslqdtyssllserlNrvmkvLTvltaiflPlTlitGiyGmNfkglP.elewsygypfvlllglmallailllf 288
                 +  + +++++e   + y+   s r  r+m ++Tv+t+iflP++++++++GmN+kg   +++ + g  ++l++ +++++a++ l+
  KKY20226.1 422 DLKQKQSSLAEARTNRYQVEDSTRHGRIMLLFTVVTIIFLPMSFLATWFGMNIKGTSdNAQLGLGVIAALIFPISIVIAMVALA 505
                 666666666666666666666666******************************988889999999999999999999988765 PP

>> 7TM_GPCR_Srab  Serpentine type 7TM GPCR receptor class ab chemoreceptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.3e-06     0.004     209     291 ..     424     506 ..     407     526 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.3e-06
  7TM_GPCR_Srab 209 klrakskrstLsnrYqleqnlrsiktlkifanlslifvviqilislllllfseslskatylaliElvhalPlYaiiliillvk 291
                    k +++s  ++ +nrYq+e++ r  +++ +f+ +++if+ + +l++ + ++++   ++a++   +     +P+  +i +++l++
     KKY20226.1 424 KQKQSSLAEARTNRYQVEDSTRHGRIMLLFTVVTIIFLPMSFLATWFGMNIKGTSDNAQLGLGVIAALIFPISIVIAMVALAF 506
                    344455566669****************************9999999887776666666555555566789988888887764 PP

>> DUF3021  Protein of unknown function (DUF3021)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.5   7.9e-06     0.024      58     115 ..     438     506 ..     432     515 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.9e-06
     DUF3021  58 feserlsllkqtlihflvvlllvlllalllgWfpl.............svigiliv.ilifiiiyliiwlif 115
                 +++e+     ++++ f vv++++l++++l+ Wf +              vi  li+ i i i   +++ l+f
  KKY20226.1 438 YQVEDSTRHGRIMLLFTVVTIIFLPMSFLATWFGMnikgtsdnaqlglGVIAALIFpISIVI---AMVALAF 506
                 667777777889999********************999999888665544444444333332...3333333 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   1.1e-05     0.032     335     437 ..     402     515 ..     361     530 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
     DUF2207 335 slkeikkyakkskkkakkfkkalkkwksavkk...kergyfdkkgkkklkklsalglgliilglilillallllvll...........lvfllilllil 419
                 ++ +i k+a++    +++++++++  +++      ++++y  +++ ++  ++ ++ ++ ii++ + +l++ +++++            ++ +li+ + +
  KKY20226.1 402 TWAGIAKTARS---VYNEIQAQMDLKQKQSSLaeaRTNRYQVEDSTRHGRIMLLFTVVTIIFLPMSFLATWFGMNIKgtsdnaqlglgVIAALIFPISI 497
                 25555566655...444444444333333333556777777777777777777777777777777777777777777*******999988888888888 PP

     DUF2207 420 lliaiivlllfsrllgrr 437
                 +++++++++ fs +l+ +
  KKY20226.1 498 VIAMVALAFAFSQRLRDW 515
                 888888888888887776 PP

>> LptF_LptG  Lipopolysaccharide export system permease LptF/LptG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   1.1e-05     0.033     244     339 ..     419     520 ..     303     524 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
   LptF_LptG 244 delslselkekikalrseglevrryr.aelhkrlalplaclv.....faliaaplglvkrrggrglr...lliaillfvlyyvllslgkalaengvlpp 333
                 +++   +lk+k+++l++++ ++ +++  + h r++l ++++      + ++a  +g+ ++  +  ++    +ia l+f +  v+  ++ a+a  + l  
  KKY20226.1 419 AQM---DLKQKQSSLAEARTNRYQVEdSTRHGRIMLLFTVVTiiflpMSFLATWFGMNIKGTSDNAQlglGVIAALIFPISIVIAMVALAFAFSQRLRD 514
                 344...4456666666666665556667999999999998772222245667779999988888888667777888888889999999999999***** PP

   LptF_LptG 334 ilaawl 339
                 ++a w+
  KKY20226.1 515 WFASWI 520
                 *****8 PP

>> MTABC_N  Mitochondrial ABC-transporter N-terminal five TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   9.8e-05      0.29     121     193 ..     435     504 ..     421     527 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.8e-05
     MTABC_N 121 rkllpslptrgHglvlLlfwtlafvaenlafvswnsedwWf..klktlkdqvefglfvvryvvtlllfvlGlkaP 193
                 ++ ++   + +Hg ++Llf ++++++  ++f+       Wf  ++k ++d++++gl v+ +++  + +v+++ a 
  KKY20226.1 435 TNRYQVEDSTRHGRIMLLFTVVTIIFLPMSFLA-----TWFgmNIKGTSDNAQLGLGVIAALIFPISIVIAMVAL 504
                 44444444446**************99999986.....5775788999*********999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       870  (0.0485247); expected 358.6 (0.02)
Passed bias filter:                      639  (0.0356406); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 3768.11
//
Query:       KKY20227.1  [L=476]
Description: putative ornithine aminotransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.9e-118  394.7   0.0   4.5e-118  394.4   0.0    1.0  1  Aminotran_3      Aminotransferase class-III
      0.003   16.9   0.0     0.0059   15.9   0.0    1.4  1  Beta_elim_lyase  Beta-eliminating lyase
      0.003   16.8   0.0     0.0049   16.1   0.0    1.3  1  Aminotran_1_2    Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.4   0.0  7.6e-122  4.5e-118       2     405 ..      51     447 ..      50     448 .. 0.94

  Alignments for each domain:
  == domain 1  score: 394.4 bits;  conditional E-value: 7.6e-122
                  C-TTB--SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHH CS
  Aminotran_3   2 vareednlllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseA 99 
                  +a+++++l++v  +a G+  +d +g++ylD++s++++vn+Gh+hP++vka+ +qa +l++ s +a+ n+   ++ae +++ ++   d+v+ +n+G+eA
   KKY20227.1  51 AAHNYHPLPVVFARALGTKAWDPEGREYLDFLSAYSAVNQGHCHPELVKALTDQASTLTLSS-RAFYNDVFPRFAEFVTNYFGF--DMVLPMNTGAEA 145
                  688999999***************************************************99.*******************99..************ PP

                  HHHHHHHHHHHHHHTS..HCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEE CS
  Aminotran_3 100 vetAlKlarkyarekk..atektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaA 195
                  vetA+K+ark+ +++k   ++ + +++++++fHGrt++a+s++++ ++ ++++gp lp++ + + + +  +++n+   aa+ e+le       d++aA
   KKY20227.1 146 VETAVKIARKWGYKVKgiPENEAFVLSVTENFHGRTFAAISMSTD-PESRENYGPYLPNIGSYNPKTKKPIHYND--VAAVREALE----DCGDKIAA 236
                  *************9998888888999*******************.****************9999877777777..444444444....578***** PP

                  EEE-SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTSB--TTT CS
  Aminotran_3 196 vivEpiqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgG.lplsavlataevmqalapgshgsTfg 292
                  ++vEpiqge+G+vv+++++l+++r+lc+kh+vl+i DE+qtG++rTG l ++e+ g++pDl++l+Ka++gG +p+s+vl+ +++m +++pg hgsT+g
   KKY20227.1 237 FLVEPIQGEAGIVVPDDNYLREIRDLCDKHNVLMICDEIQTGIARTGRLLCHEWSGIKPDLVLLGKAISGGmYPVSCVLGSKDIMLTIEPGTHGSTYG 334
                  ************************************************************************************************** PP

                  T-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC...HHHHHHHHHCTEE-EEETTTEEEE--- CS
  Aminotran_3 293 GnplacavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke...keilkkakekGvlilsaGdnvirllpp 387
                  Gnpl cava+ +lei+ +e ++++a++lg+++++gL+++q+   +ik++RgkGl+ ai + e+++      ++++  +kekG+l +++++n+irl+pp
   KKY20227.1 335 GNPLGCAVAIRALEIVRDESMVDRAERLGHMFRDGLKAIQSP--MIKTIRGKGLLNAIVIDESKTG-GhsaWDMCMLMKEKGLLAKPTHQNIIRLAPP 429
                  ****************************************54..8**********99966666663.2478*************************** PP

                  TT--HHHHHHHHHHHHHH CS
  Aminotran_3 388 liitdeeidelleilkka 405
                  l+it+eei+ +l+i+++a
   KKY20227.1 430 LVITEEEIKVALSIIEAA 447
                  **************9976 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   9.8e-07    0.0059      33     167 ..     119     273 ..      98     275 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 9.8e-07
                      HHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEEEETT..........-HHHHSSTTHHHHCC--EEEEE-EBTT.......... CS
  Beta_elim_lyase  33 tvnrLedavaelfgkeaalfvpqGtaAnsillkillqrgeevivtep..........ahihfdetgaiaelagvklrdlknkea.......... 106
                       + r+++ v+++fg++ +l++ +G  A + ++ki   ++  ++ ++p           ++h ++  ai+              +          
       KKY20227.1 119 VFPRFAEFVTNYFGFDMVLPMNTGAEAVETAVKIAR-KWGYKVKGIPeneafvlsvtENFHGRTFAAISMST-----------Dpesrenygpy 200
                      57789999**************99888888887765.88888888884444433333333333333333333...........23344456667 PP

                      ...............TBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHH.HHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase 107 ...............GkmdlekleaaikevgaheekiklisltvTnntagGqvvslee.lrevaaiakkygiplhlD 167
                                      + d++++++a+++ g+   ki++ +++      +G vv+ ++ lre++++++k+++ +++D
       KKY20227.1 201 lpnigsynpktkkpiHYNDVAAVREALEDCGD---KIAAFLVEPIQG-EAGIVVPDDNyLREIRDLCDKHNVLMICD 273
                      7*************9999***********777...888888887776.489***988659************99999 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   8.3e-07    0.0049     121     361 ..     216     442 ..     194     444 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 8.3e-07
                    EBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HH.HHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHH.HGGSTTSTTEE CS
  Aminotran_1_2 121 plyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatle.eleklldlakkynlllfvDeaYagfvfgsldavat.ranveeepnll 214
                    +        +d+ a+ eal+++  +  k+  +lve ++   G v + +  l+++ dl++k+n+l ++De+  g + +      + +++ +    +l
     KKY20227.1 216 H-------YNDVAAVREALEDCG-D--KIAAFLVEPIQGEAGIVVPDDnYLREIRDLCDKHNVLMICDEIQTGIARTGR----LlCHEWSGIKPDL 297
                    4.......479999999999853.2..3579999999999998766551699******************999999953....3366666666689 PP

                    EEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS...TEEEECCSCS CS
  Aminotran_1_2 215 ivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael...glkvlasqsg 305
                    ++ + + + G++   v ++lg++++  +++    + ++    l+ a++  al+ + +     e m++r +++ + +rd+L+++    +k +    g
     KKY20227.1 298 VLLGKAISGGMYP--VSCVLGSKDIMLTIEPGTHGSTYggNPLGCAVAIRALEIVRD-----ESMVDRAERLGHMFRDGLKAIqspMIKTIRG-KG 385
                    9988888889999..999999998888888887776666777777777777777775.....5677777777777777777775524444444.67 PP

                    SEEEEEETHH..CHHHHHHH..HHHTCTEEEEEGGGGTSTTEEEEEC.TTS-HHHHHHHHH CS
  Aminotran_1_2 306 mflltdlsae..takelskk..LleevgvyvtpgtsftvpgrlRitv.Aglteeeleelve 361
                    ++   +++++    ++++++  L +e+g++  p    t ++ +R+ +    teee++ +++
     KKY20227.1 386 LLNAIVIDESktGGHSAWDMcmLMKEKGLLAKP----THQNIIRLAPpLVITEEEIKVALS 442
                    777777777766677777778888888888888....557788888866677777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3084.91
//
Query:       KKY20228.1  [L=1473]
Description: putative abc transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-63  215.3  34.1    5.5e-40  137.7  13.8    3.1  3  ABC_membrane    ABC transporter transmembrane region
    8.6e-47  159.1   3.7    1.9e-28   99.7   0.1    3.3  2  ABC_tran        ABC transporter
    4.8e-07   29.8   0.2       0.02   15.0   0.1    3.1  2  MMR_HSR1        50S ribosome-binding GTPase
      1e-06   28.4   1.4      0.023   14.1   1.4    3.5  2  SMC_N           RecF/RecN/SMC N terminal domain
      8e-06   25.5   0.6      0.074   12.8   0.0    2.6  2  AAA_29          P-loop containing region of AAA domain
    2.1e-05   24.5   3.0      0.077   12.8   0.1    3.4  3  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
     0.0002   21.8   0.0        1.5    9.2   0.0    3.6  3  AAA_16          AAA ATPase domain
    0.00022   21.2   1.3       0.16   11.9   0.0    2.6  2  RsgA_GTPase     RsgA GTPase
    0.00034   20.7   5.0      0.054   13.6   0.1    3.6  3  Dynamin_N       Dynamin family
    0.00099   18.4   0.0       0.15   11.3   0.0    2.4  2  Zeta_toxin      Zeta toxin
     0.0022   17.8   1.3        2.2    7.9   0.0    3.2  3  AAA_15          AAA ATPase domain
     0.0027   17.9   1.3       0.23   11.5   0.2    2.7  2  DUF87           Helicase HerA, central domain
     0.0036   17.1   0.0       0.16   11.7   0.0    2.5  2  IstB_IS21       IstB-like ATP binding protein
     0.0051   17.1   0.8        6.6    7.0   0.1    3.2  2  AAA_22          AAA domain
     0.0074   16.8  10.2       0.35   11.4   0.1    4.0  4  AAA_23          AAA domain
  ------ inclusion threshold ------
      0.048   14.2   0.1         15    6.2   0.1    2.7  2  AAA_18          AAA domain
      0.091   12.3   0.3        6.5    6.3   0.0    2.9  3  AAA_27          AAA domain
       0.11   12.8   0.5         16    5.7   0.0    3.0  2  Roc             Ras of Complex, Roc, domain of DAPkinase
       0.12   12.2   0.2         12    5.8   0.0    2.5  2  Ploopntkinase3  P-loop Nucleotide Kinase3
       0.22   11.3   0.6        9.8    5.9   0.1    2.5  2  ATP_bind_1      Conserved hypothetical ATP binding protein
       0.23   11.1   2.2         12    5.5   0.0    3.1  3  AAA_30          AAA domain
       0.47   10.0   1.8         11    5.5   0.0    2.7  3  AAA_7           P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.5   0.00013      0.11       3      88 ..     184     277 ..     182     281 .. 0.72
   2 !   75.8   5.7   5.1e-24   4.2e-21      96     274 .]     342     517 ..     339     517 .. 0.96
   3 !  137.7  13.8   6.7e-43   5.5e-40       3     268 ..     888    1146 ..     887    1153 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH.........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCST CS
  ABC_membrane   3 liillailagvlsplfplvlgrildtlldkgdpet.........ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqp 88 
                   l+ l+ +l+ + ++++p+ + ++++  +d     t         ++ + ++l ++++ ++q++ +    y   ++g+ ++  l + +f+k l+ +
    KKY20228.1 184 LGGLCNLLSSIFQVMTPFTTRYLIQYATDA-YEATrsgtpaphiSHGIGLALGITFMQIFQSLGTNHFIYRGFMVGGEARAVLITAIFEKALKIS 277
                   566667777777777777777766666664.22223445686777777777777777777777777777777******************99876 PP

  == domain 2  score: 75.8 bits;  conditional E-value: 5.1e-24
                   CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH CS
  ABC_membrane  96 svGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirt 192
                   s G+++++++ d+++++++ g ++++++ ++++ ++++++++ lg + +l++ a+l+l i++     k l k +k+ +k ++++ s+++E+l  +r 
    KKY20228.1 342 SNGKIVNLMSVDTYRVDQASGLFHLTWTSPVAIAITLVVLCINLGAS-ALAGYALLVLSIPLLTKSIKSLFKRRKRINKITDQRVSLTQEILASVRF 437
                   68********************************************8.8*************9999999999************************* PP

                   HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 193 VkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfgal 274
                   Vk+fg+e+ fle+ ++ + ++ +a    + +++++++++++++ +s +la+   t+  +++ ls+  ++  l+lf+ l ++l
    KKY20228.1 438 VKYFGWESSFLERLKEIRSREIRAIQILLAVRNAINAVSMSMPVFSSMLAFI--TFSLSNHSLSPARIFSSLALFNALRMPL 517
                   **************************************************55..55556889****************9986 PP

  == domain 3  score: 137.7 bits;  conditional E-value: 6.7e-43
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCH CS
  ABC_membrane    3 liillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsv 97  
                    l+il+++l+++++++++l+l++++++  ++ +  +     y+ ++++lg++q++l++++s+ll+v g ++sk+l + ++ ++lr+pmsffdt++ 
    KKY20228.1  888 LVILALLLSQGANIATSLWLSYWTSNKYPHLTLGD-----YIGVYVSLGFLQALLMYIYSTLLSVGGTNASKTLLQGAITRVLRAPMSFFDTTPL 977 
                    6799*************************999999.....******************************************************* PP

                    HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH CS
  ABC_membrane   98 GellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirt 192 
                    G++++r+++d++++++ l++ + + f  l+++ +++++++ +  +++++l ++++l+i+ + ++    +++k+ e+  ++ +++ + E+++g   
    KKY20228.1  978 GRITNRFSRDIDTMDNNLTDAMRMYFLTLAMITAVFALIISFFHYFAIALGPLFFLFIFAAGYYRASAREVKRHESVLRSHVFARFSEAVTGTSS 1072
                    *********************************************************************************************** PP

                    HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHH CS
  ABC_membrane  193 VkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfa 268 
                    ++a++ +++f++++ +a++++ +a++     +++l+++++++g+l+++ +  + +t   + ++s+g    +ls++ 
    KKY20228.1 1073 IRAYRLQDFFTTRIREAIDDMDSAYFLTFSNQRWLSVRLDCIGNLLVLTVGILVVTSRFDVNPSIGG--LVLSYIL 1146
                    **************************************************77777777777888888..5555555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   6.9e-19   5.6e-16       1     136 [.     618     752 ..     618     753 .. 0.87
   2 !   99.7   0.1   2.4e-31   1.9e-28       1     137 []    1217    1386 ..    1217    1386 .. 0.85

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 6.9e-19
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHHST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsklg 93 
                 l+++++++k++e++a++G  G+GKS+Ll++lag ++ t G++             +l +  +++pq + +++ + ++en      +++++ +++l+   
  KKY20228.1 618 LHDLNFTVKRNELLAVIGTVGSGKSSLLSALAGDMRLTDGTM-------------KLGATRAFCPQYAWIQNAS-LKENilfgrpYDSKWYNRVLDACA 702
                 789**************************************9.............5667777777776666666.777777777799999999999998 PP

                 TGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  94 lke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 l          + t +++++ ++SgGqkqr+ + ra+  +++++l+D+p 
  KKY20228.1 703 LRPdleilpaGDRTEIGERGITVSGGQKQRLNISRAIYFNADIILMDDPL 752
                 88888888887778889999****************************97 PP

  == domain 2  score: 99.7 bits;  conditional E-value: 2.4e-31
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................. 79  
                  l+ ++l+++ ge+++ivG++GaGKS+++++l +l++  +G+i++dg d+++  l+ lr +++++pq+p+lf+++ +r+n                  
  KKY20228.1 1217 LQGLNLDIQGGERIGIVGRTGAGKSSIMSALFRLTELSSGSIEIDGVDISRVGLHDLRTNLSIIPQDPTLFRGT-IRSNldpfnehtdlelwsalrq 1312
                  6889**********************************************************************.********99555555555555 PP

                  ...HHHTCHHHHHHHSTTGG............................TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  ...xxxxxxxxxxxxxxxxx............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   80 ...esdeeiekalsklglke............................lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                                                                  + +t+v++++ ++S Gq+q +alaral+++++++++DE+t+
  KKY20228.1 1313 aglV---------------SnseneseeaadpekpsssdikkatssriTLETTVDEEGLNFSLGQRQLMALARALVRNSRIIVCDEATS 1386
                  5550...............444444555555555555555556666669999***********************************96 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00033      0.27       3      34 ..     632     665 ..     630     681 .. 0.79
   2 !   15.0   0.1   2.4e-05      0.02       1      21 [.    1229    1249 ..    1229    1267 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00033
                 EEEESTTSSHHHHHHHHHTS..TEEESSSTTSSS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge..kaivsdkpgtTr 34 
                 a++G   +GKS+L++al g+      + k g+Tr
  KKY20228.1 632 AVIGTVGSGKSSLLSALAGDmrLTDGTMKLGATR 665
                 89****************9852334466667776 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2.4e-05
                  EEEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1    1 evaivGrpNvGKStLinaltg 21  
                  +++ivGr+ +GKS++++al++
  KKY20228.1 1229 RIGIVGRTGAGKSSIMSALFR 1249
                  69*****************87 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0032       2.6      24      44 ..     628     648 ..     608     656 .. 0.81
   2 !   14.1   1.4   2.8e-05     0.023      28     210 ..    1231    1427 ..    1222    1434 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0032
                 SSEEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAi 44 
                 +++ a++G  GSGKs+ll A+
  KKY20228.1 628 NELLAVIGTVGSGKSSLLSAL 648
                 45779*************998 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.8e-05
                  EEEESTTSSHHHHHHHHHHHCTT.TTTTTTCH..CCCCC.C--.......BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEE....ETTSEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxx.xxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxx RF
       SMC_N   28 aivGpNGSGKsnlldAilFvLGersakklrse..klsdl.ihk.......skekasvkkaeveitfdnedkklkiekeevsisrrv....krkgese 110 
                   ivG+ G+GKs+++ A+ F L e s+ ++  +  ++s++ +h          + + + ++++   +d  +++  ++ e +s  r++     +++ese
  KKY20228.1 1231 GIVGRTGAGKSSIMSAL-FRLTELSSGSIEIDgvDISRVgLHDlrtnlsiIPQDPTLFRGTIRSNLDPFNEH--TDLELWSALRQAglvsNSENESE 1324
                  69***************.***998887665441144444222244446655677777888888887666555..44444555555411114556688 PP

                  EEETTEEE-HHHHHHHHHCTT-STT........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  111 ykingkevtkkevsellesagiske........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislre 199 
                   + + ++ +++++++   s++i+ e        ++S G+++L+ala       v+ + + + De  +  D++  +k+   + +  k   +++i++r 
  KKY20228.1 1325 EAADPEKPSSSDIKKAT-SSRITLEttvdeeglNFSLGQRQLMALARA----LVRNSRIIVCDEATSSVDFETDAKIQMTMARGFKGKTLLCIAHRL 1416
                  88888888888888765.45566666788888899*******998754....57888999************************************9 PP

                  HHCCC-SCEEE CS
                  xxxxxxxxxxx RF
       SMC_N  200 emlekadklvg 210 
                  +++ + d+++ 
  KKY20228.1 1417 KTIINYDRICV 1427
                  99999888765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   9.1e-05     0.074      15      42 ..     621     648 ..     615     650 .. 0.78
   2 !   10.2   0.1   0.00061       0.5      23      43 ..    1227    1248 ..    1217    1252 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.1e-05
      AAA_29  15 htieidlkgatlltGpsGsGKSTllDAi 42 
                   +++++++   ++G+ GsGKS+ll A+
  KKY20228.1 621 LNFTVKRNELLAVIGTVGSGKSSLLSAL 648
                 4556666678999************887 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00061
      AAA_29   23 g.atlltGpsGsGKSTllDAiq 43  
                  g  + ++G++G+GKS+++ A+ 
  KKY20228.1 1227 GeRIGIVGRTGAGKSSIMSALF 1248
                  247789************9875 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.8    0.0028       2.3       3      20 ..     632     649 ..     630     667 .. 0.90
   2 ?    1.5   0.0      0.26   2.1e+02     237     303 .]     725     788 ..     673     788 .. 0.80
   3 !   12.8   0.1   9.4e-05     0.077       3     116 ..    1231    1333 ..    1230    1372 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0028
      AAA_21   3 vliGpNgsGKSnLLdald 20 
                 ++iG  gsGKS+LL al 
  KKY20228.1 632 AVIGTVGSGKSSLLSALA 649
                 79**************95 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.26
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll.ell.kelsrngaQv.iltTHSpllld 303
                 +S G+k+ l +  a++  +   +++l D+p +  + ++ r+++ e +  +l++   ++ il+TH+ ++l+
  KKY20228.1 725 VSGGQKQRLNISRAIYFNA---DIILMDDPLSAVDAHVGRHIMdEAIcGILKD---KCrILATHQLHVLN 788
                 3999999999999999999...9********************8777866666...6779****999986 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 9.4e-05
      AAA_21    3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv..eeklssvetllesg 97  
                  +++G+ g+GKS+++ al  l           +els+g+ +++    ++ +  + +++++i+  +++ + +r+ +r + + +   + l     l++ g
  KKY20228.1 1231 GIVGRTGAGKSSIMSALFRL-----------TELSSGSIEIDGVDISRVGLHDLRTNLSII--PQDPTLFRGTIRSNLDPFneHTDLELWSALRQAG 1314
                  69***************888...........678888888888888888888888888888..8888888888888877776644444444444555 PP

      AAA_21   98 llldkrsleeedvfnpear 116 
                  l ++++++ ee +++ +++
  KKY20228.1 1315 LVSNSENESEEAADPEKPS 1333
                  5555555555555555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0018       1.5      22      51 ..     628     655 ..     617     813 .. 0.75
   2 ?   -0.8   0.0       2.2   1.8e+03      53     132 ..    1124    1211 ..    1108    1218 .. 0.66
   3 !    7.8   0.0    0.0049         4      25      52 ..    1228    1276 ..    1220    1405 .. 0.46

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0018
      AAA_16  22 grpelvllsGesGvGKsslvrellralekd 51 
                 +  el+ ++G  G+GKssl+ +l+  ++ +
  KKY20228.1 628 N--ELLAVIGTVGSGKSSLLSALAGDMRLT 655
                 3..7999*************9998755544 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.2
      AAA_16   53 giflrgkcdqlesa....ipysa.laqalareellrqllde....aesaeleawrekleeala.avpelagaeasrllellkrllallsr 132 
                  +++++ ++d ++s     ++y+  ++q++ +   +rql++      ++    +++++l+e++   +++++++ ++  +  +++  +++++
  KKY20228.1 1124 ILVVTSRFDVNPSIgglvLSYILaIVQMI-Q-FTVRQLAEVennmNATERIHYYATQLDEEAPlKIQQMDPSWPQTGRIRFNDVEMRYRP 1211
                  67788999999555566688844477777.4.3445555444444667677888888888877877888887776666666666665555 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0049
      AAA_16   25 elvllsGesGvGKsslvrellralekd......................g 52  
                  e + ++G  G GKss++ +l+r l++                       +
  KKY20228.1 1228 ERIGIVGRTGAGKSSIMSALFR-LTELssgsieidgvdisrvglhdlrtN 1276
                  556699***************6.444423334333333333222222220 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0    0.0002      0.16      89     126 ..     617     655 ..     592     665 .. 0.83
   2 !    7.3   0.3     0.005         4     100     130 ..    1228    1258 ..    1216    1263 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0002
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallpelelk 126
                  +l++l+  +k  ++ +++G  G GKS+L+ al+++++l 
   KKY20228.1 617 KLHDLNFTVKRnELLAVIGTVGSGKSSLLSALAGDMRLT 655
                  56778888877799*******************998765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.005
                   SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  100 ktsvlvGqSGvGKStLinallpelelktgev 130 
                   + + +vG +G+GKS+++ al   +el+ g++
   KKY20228.1 1228 ERIGIVGRTGAGKSSIMSALFRLTELSSGSI 1258
                   556699************9988777766655 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   6.6e-05     0.054       1      27 [.     631     657 ..     631     668 .. 0.83
   2 ?   -1.7   0.0       3.3   2.7e+03      59      83 ..     828     852 ..     814     921 .. 0.67
   3 !    6.7   0.7    0.0085       6.9       1      29 [.    1230    1258 ..    1230    1415 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.6e-05
                 EEEEEBTTTTHHHHHHHHHTS--S--- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprg 27 
                 +av+G++ sGKSS+l aL g+  l  g
  KKY20228.1 631 LAVIGTVGSGKSSLLSALAGDMRLTDG 657
                 69******************8766655 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.3
                 T-EB--CHHHHHHHHHHHHHHHTSS CS
   Dynamin_N  59 ekkledfsevreeieketekiagan 83 
                 e+k++  +e  +eie+e++++++++
  KKY20228.1 828 ETKQKAENEDGDEIEEEKKEVKKKK 852
                 2222233333333333333333222 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0085
                  EEEEEBTTTTHHHHHHHHHTS--S---SS CS
   Dynamin_N    1 iavvGsqSsGKSSvlnaLlgedilprgpn 29  
                  i +vG + +GKSS++ aL +   l +g++
  KKY20228.1 1230 IGIVGRTGAGKSSIMSALFRLTELSSGSI 1258
                  789***************98877777765 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00019      0.15      15      89 ..     627     699 ..     617     704 .. 0.84
   2 ?    4.4   0.0     0.025        20      21      51 ..    1232    1262 ..    1229    1267 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
  Zeta_toxin  15 rPklillgGqpGAGKselaellkdelerqgnvvrldpDdlRelhPeyeeilkadpkkaseltqkdaselvekllq 89 
                 r  l+ + G  G+GKs+l+++l+ +++ +++  +l +   R++ P+y+ i++a  k++    ++  s++ +++l+
  KKY20228.1 627 RNELLAVIGTVGSGKSSLLSALAGDMRLTDGTMKLGA--TRAFCPQYAWIQNASLKENILFGRPYDSKWYNRVLD 699
                 5566777899****************99999998887..59**********999999888888888888888776 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.025
  Zeta_toxin   21 lgGqpGAGKselaellkdelerqgnvvrldp 51  
                  ++G +GAGKs+++++l + +e  ++ +++d+
  KKY20228.1 1232 IVGRTGAGKSSIMSALFRLTELSSGSIEIDG 1262
                  789***********99887777777777775 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0027       2.2      11      43 ..     616     648 ..     609     650 .. 0.78
   2 ?   -0.9   0.5       1.3   1.1e+03     259     285 ..     824     850 ..     778     869 .. 0.47
   3 !    6.7   0.0    0.0063       5.1      28      84 ..    1232    1312 ..    1221    1364 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0027
      AAA_15  11 FRslkd.veidlseeltvliGkNnsGKSsileal 43 
                 F+ ++  ++++ +e l  +iG+ +sGKSs+l al
  KKY20228.1 616 FKLHDLnFTVKRNE-LLAVIGTVGSGKSSLLSAL 648
                 66666446677556.*****************98 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.3
      AAA_15 259 elkkilkkkidkikkfnykgkkneeie 285
                  ++++ k+k ++ +  ++ ++k+e ++
  KKY20228.1 824 TAQEETKQKAENEDGDEIEEEKKEVKK 850
                 222222222222222222222221111 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0063
      AAA_15   28 liGkNnsGKSsilealdlFlnnkekknkkvikiekedleifeniseskdikIdvef............................a 84  
                  ++G+ ++GKSsi+ al  + + +    +  i i+  d++     +   ++ I  +                             +
  KKY20228.1 1232 IVGRTGAGKSSIMSALFRLTELS----SGSIEIDGVDISRVGLHDLRTNLSIIPQDptlfrgtirsnldpfnehtdlelwsalrQ 1312
                  8***************7777766....5667777777777777777777777777666666666666666666666666655541 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0      0.05        40      26      43 ..     631     648 ..     620     656 .. 0.88
   2 !   11.5   0.2   0.00028      0.23      24      45 ..    1228    1249 ..    1219    1258 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.05
       DUF87  26 lAilgsTGsGKSntvavL 43 
                 lA++g+ GsGKS + + L
  KKY20228.1 631 LAVIGTVGSGKSSLLSAL 648
                 7***********998877 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00028
       DUF87   24 rHlAilgsTGsGKSntvavLle 45  
                  ++++i+g+TG+GKS  ++ L++
  KKY20228.1 1228 ERIGIVGRTGAGKSSIMSALFR 1249
                  689***************9986 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0    0.0002      0.16       9      68 ..     587     649 ..     582     658 .. 0.88
   2 ?    2.4   0.0      0.13   1.1e+02      45      67 ..    1225    1247 ..    1216    1288 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0002
   IstB_IS21   9 rlaklpaqktledidfraarsldkrkvk..eLatlsf.iekkenivllGpsGvGKshlaialg 68 
                 + +k+p++  +++++ ++ + +++++v+  +L  l+f ++++e ++++G  G GKs l  al+
  KKY20228.1 587 ADSKIPKSSSPKEVHLNNDNASEQTHVEpfKLHDLNFtVKRNELLAVIGTVGSGKSSLLSALA 649
                 6789999999999******9*******98899****9557788999************99997 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.13
   IstB_IS21   45 ekkenivllGpsGvGKshlaial 67  
                  +  e i ++G +G+GKs +  al
  KKY20228.1 1225 QGGERIGIVGRTGAGKSSIMSAL 1247
                  5568899**********999887 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0081       6.6       5      25 ..     628     648 ..     624     652 .. 0.86
   2 ?    6.6   0.1     0.011       9.1      10      38 ..    1232    1271 ..    1225    1416 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0081
      AAA_22   5 agilvvtGesGtGKTtllrrl 25 
                   +l+v+G +G+GK+ ll  l
  KKY20228.1 628 NELLAVIGTVGSGKSSLLSAL 648
                 6789************99877 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.011
      AAA_22   10 vtGesGtGKTtllrrlleqldeeakaee...........e 38  
                  ++G +G+GK+  +  l++  +  +   e           +
  KKY20228.1 1232 IVGRTGAGKSSIMSALFRLTELSSGSIEidgvdisrvglH 1271
                  89**************998865544444666655555551 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.6   2.2e+03     183     183 ..     320     320 ..     265     463 .. 0.56
   2 ?    6.1   0.0     0.018        15       9      39 ..     615     648 ..     611     650 .. 0.84
   3 ?    1.2   2.4      0.53   4.3e+02     136     171 ..     822     857 ..     773     867 .. 0.58
   4 !   11.4   0.1   0.00043      0.35      23      39 ..    1231    1247 ..    1218    1252 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.6
      AAA_23 183 k 183
                 k
  KKY20228.1 320 K 320
                 1 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.018
      AAA_23   9 sfrdqeidF...skgltlItGpNGaGKTTildAi 39 
                 +f+  +++F    + l +++G  G+GK+++l A+
  KKY20228.1 615 PFKLHDLNFtvkRNELLAVIGTVGSGKSSLLSAL 648
                 66666788888888999**************998 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.53
      AAA_23 136 lflgqerfeefelkdkkerleelekeleeledekkl 171
                 +  +qe+++ ++++++ +++ee +ke +++++ k+l
  KKY20228.1 822 ATTAQEETKQKAENEDGDEIEEEKKEVKKKKKPKQL 857
                 333333333333344444444444444444444443 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 0.00043
      AAA_23   23 lItGpNGaGKTTildAi 39  
                   I+G +GaGK++i+ A+
  KKY20228.1 1231 GIVGRTGAGKSSIMSAL 1247
                  69************998 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1     0.018        15       3      19 ..     633     649 ..     631     674 .. 0.88
   2 ?    5.1   0.0     0.039        32       1      25 [.    1230    1262 ..    1230    1313 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.018
      AAA_18   3 ltGtpGvGKttlakeLs 19 
                 + Gt G+GK++l  +L+
  KKY20228.1 633 VIGTVGSGKSSLLSALA 649
                 89************996 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.039
      AAA_18    1 IlltGtpGvGKttlakeLskrlgf........g 25  
                  I++ G  G+GK+++  +L +++++        g
  KKY20228.1 1230 IGIVGRTGAGKSSIMSALFRLTELssgsieidG 1262
                  89****************777655554444452 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.7     3e+03     151     188 ..     389     425 ..     387     434 .. 0.76
   2 ?    6.3   0.0     0.008       6.5      14      46 ..     616     648 ..     614     652 .. 0.92
   3 ?    2.6   0.0      0.11        90      31      49 ..    1232    1250 ..    1218    1251 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.7
      AAA_27 151 asaGlaslrevleaLeaeadelfkprkskkraineale 188
                 a aG+a l   +  L+++ ++lfk+rk+ + +i++++ 
  KKY20228.1 389 ALAGYALLVLSIPLLTKSIKSLFKRRKRIN-KITDQRV 425
                 67788888888888999999****999999.6666554 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.008
      AAA_27  14 ftdrsldfsaeeadlhliyGpNEAGKstalrAi 46 
                 f+ + l+f  ++++l  ++G+  +GKs++l+A+
  KKY20228.1 616 FKLHDLNFTVKRNELLAVIGTVGSGKSSLLSAL 648
                 77789**************************98 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.11
      AAA_27   31 iyGpNEAGKstalrAisdl 49  
                  i+G   AGKs++++A+ +l
  KKY20228.1 1232 IVGRTGAGKSSIMSALFRL 1250
                  789************9766 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.079        64       3      26 ..     632     655 ..     631     682 .. 0.80
   2 ?    5.7   0.0      0.02        16       2      35 ..    1230    1264 ..    1229    1277 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.079
                 EEESSTTSSHHHHHHCHCT-CCC- CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfse 26 
                  ++G  g+GK+sll+ +  d   +
  KKY20228.1 632 AVIGTVGSGKSSLLSALAGDMRLT 655
                 689************998876655 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.02
                  EEEESSTTSSHHHHHHCHCT.-CCC-EEETTTTEE CS
         Roc    2 vvlvGdsgvGKtsllkrfve.dkfsekekstigvd 35  
                  + +vG +g+GK+s+++ + +  + s+ + ++ gvd
  KKY20228.1 1230 IGIVGRTGAGKSSIMSALFRlTELSSGSIEIDGVD 1264
                  779************99886233445555555555 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.062        51       4      25 ..     629     650 ..     626     663 .. 0.84
   2 ?    5.8   0.0     0.015        12       6      25 ..    1230    1249 ..    1228    1272 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.062
  Ploopntkinase3   4 rliylvGqPGaGkstlmaeltk 25 
                      l+ ++G+ G+Gks l+++l+ 
      KKY20228.1 629 ELLAVIGTVGSGKSSLLSALAG 650
                     57789*************9975 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.015
  Ploopntkinase3    6 iylvGqPGaGkstlmaeltk 25  
                      i +vG  GaGks +m++l +
      KKY20228.1 1230 IGIVGRTGAGKSSIMSALFR 1249
                      569*************9976 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1     0.012       9.8       1      21 [.     633     653 ..     633     661 .. 0.82
   2 ?    3.2   0.0     0.078        64       1      23 [.    1232    1254 ..    1232    1261 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.012
  ATP_bind_1   1 vvGpaGsGKttfvgalseile 21 
                 v+G++GsGK+++ +al+  ++
  KKY20228.1 633 VIGTVGSGKSSLLSALAGDMR 653
                 89************9986665 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.078
  ATP_bind_1    1 vvGpaGsGKttfvgalseilelr 23  
                  +vG  G+GK+++++al  ++el+
  KKY20228.1 1232 IVGRTGAGKSSIMSALFRLTELS 1254
                  79**************9988876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2      0.06        49      15      40 ..     625     650 ..     621     666 .. 0.80
   2 ?    5.5   0.0     0.015        12      22      44 ..    1231    1253 ..    1224    1268 .. 0.83
   3 ?   -2.3   0.0       3.6     3e+03     134     160 ..    1447    1470 ..    1446    1472 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.06
      AAA_30  15 tsgdrvavltGpAGtGKttalkalre 40 
                  +++ + ++ G  G+GK+ +l+al+ 
  KKY20228.1 625 VKRNELLAVIGTVGSGKSSLLSALAG 650
                 56677999**************9975 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.015
      AAA_30   22 vltGpAGtGKttalkalreawea 44  
                   ++G+ G+GK+ +++al ++ e 
  KKY20228.1 1231 GIVGRTGAGKSSIMSALFRLTEL 1253
                  589*************9887765 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3.6
      AAA_30  134 GgvlrdlveaagigtaeLtevvRqkes 160 
                  Gg++r+++e      ++Lte++R + +
  KKY20228.1 1447 GGIFRSMCE---RSGITLTEIQRAQME 1470
                  999****85...567899999998765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.095        78      28      55 ..     623     650 ..     618     661 .. 0.82
   2 ?   -3.1   0.1       5.7   4.7e+03      22      51 ..     930     959 ..     928     967 .. 0.79
   3 ?    5.5   0.0     0.013        11      31      55 ..    1225    1249 ..    1219    1265 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.095
       AAA_7  28 lllknkkpvllvGptGtGKtviikdllk 55 
                   +k++  + ++G++G+GK+++++ l  
  KKY20228.1 623 FTVKRNELLAVIGTVGSGKSSLLSALAG 650
                 56788888999**********9988765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.7
       AAA_7  22 ysyllelllknkkpvllvGptGtGKtviik 51 
                 + +l  ll+     +l vG t  +Kt++  
  KKY20228.1 930 LGFLQALLMYIYSTLLSVGGTNASKTLLQG 959
                 5677888888999999**********8755 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.013
       AAA_7   31 knkkpvllvGptGtGKtviikdllk 55  
                  + +  + +vG tG GK++i++ l++
  KKY20228.1 1225 QGGERIGIVGRTGAGKSSIMSALFR 1249
                  66677889************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1395  (0.0778069); expected 358.6 (0.02)
Passed bias filter:                      758  (0.0422779); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 1.20u 0.36s 00:00:01.56 Elapsed: 00:00:00.53
# Mc/sec: 8323.91
//
Query:       KKY20290.1  [L=304]
Description: putative phosphotransferase enzyme family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.4e-17   61.7   0.0    1.4e-16   61.1   0.0    1.2  1  APH             Phosphotransferase enzyme family
    1.8e-07   30.8   0.4     0.0041   16.5   0.1    2.1  2  Pkinase         Protein kinase domain
    1.4e-05   24.8   0.4    3.9e-05   23.3   0.4    1.8  1  Choline_kinase  Choline/ethanolamine kinase
  ------ inclusion threshold ------
      0.061   12.3   0.3       0.28   10.1   0.1    2.0  3  Haspin_kinase   Haspin like kinase domain
       0.13   12.3   0.1        4.9    7.2   0.0    2.3  2  DUF5330         Family of unknown function (DUF5330)


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0     4e-20   1.4e-16      52     208 ..      88     257 ..      79     278 .. 0.80

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 4e-20
                 -..B--B-CTTBS-EEETTE.....EEEEEE----EE-SS...HHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCC CS
         APH  52 v..pvPevlagdtddeeigl.....lfalieyvpgrsllr...klsaaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesatarllase 140
                 v  p Pev+++ t++++ g+     ++ +++y+pg++l++   +l+++q+++l  +l + l  lh v+++  ++ d ++  +++  +  s   +++   
  KKY20290.1  88 VqiPMPEVYDCWTSQQHTGRqakesVYIVMQYIPGKILAQtieNLDEEQTRDLTSQLTRILNTLHTVRHTVPGPVDGGRA-MAPRLFTTSG--AGPFNS 183
                 444*******77*******************************************************9888888877765.6666666666..677777 PP

                 TCCHHHHHHHHHHHHHHHH--S.............SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCC CS
         APH 141 lldlleeleeqvlaalaallpg.............elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavl 208
                 l+d    l + + +++++l +                + v +H D h++Nll+d+ ++    +iD+++ag  p +++ + l
  KKY20290.1 184 LQD----LID-WFNECLKLCHFfgraskqqgfdedIKDLVMCHMDVHLDNLLLDDSGNLW--LIDWDCAGFYPDVFEYVCL 257
                 777....333.333344444436666666666666668999*************888888..********99988887665 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   1.1e-06    0.0041      69     116 ..     104     153 ..      57     158 .. 0.82
   2 !   12.7   0.0   1.7e-05      0.06     119     149 ..     219     249 ..     213     265 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.1e-06
                 E.....SSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHH CS
     Pkinase  69 e.....kdelylvleyveggeladllerkgslseeeakkiakqilegleylHs 116
                 +     k+++y+v++y++g+ la+ +e+   l+ee+++++++q+ + l+ lH 
  KKY20290.1 104 HtgrqaKESVYIVMQYIPGKILAQTIEN---LDEEQTRDLTSQLTRILNTLHT 153
                 36666699******************95...*********************6 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.7e-05
                 EE-SS-SGGGEEEETTTEEEE-SGTTSEESS CS
     Pkinase 119 iiHrDlKpeNiLidekgelKitDFGlakele 149
                 ++H+D+  +N+L+d++g+l ++D++ a  + 
  KKY20290.1 219 MCHMDVHLDNLLLDDSGNLWLIDWDCAGFYP 249
                 68***********************998765 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.4   1.1e-08   3.9e-05     125     181 ..     182     252 ..     113     255 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.1e-08
                     HHHHHHHHTHHHHHH...............CHGG-EEEE-S--SGGGEEE.-CTTEEEE--GTT-EEEEHHH CS
  Choline_kinase 125 edlekelekleklle...............elespvvfcHnDlqegNillnkeekklvlIDFEYagynyrgf 181
                     ++l++ ++++++ l+               e  +++v+cH D+   N+ll ++ ++l+lID+  ag+ + +f
      KKY20290.1 182 NSLQDLIDWFNECLKlchffgraskqqgfdEDIKDLVMCHMDVHLDNLLL-DDSGNLWLIDWDCAGFYPDVF 252
                     56666666666666666677777666666566677***************.999*********999887776 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.81   2.9e+03     264     280 ..      31      47 ..      25      48 .. 0.79
   2 ?   -1.3   0.0      0.22     8e+02     308     343 ..     117     152 ..     106     158 .. 0.84
   3 ?   10.1   0.1   7.7e-05      0.28     230     255 ..     221     246 ..     215     255 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.81
  Haspin_kinase 264 lytrlddpllFqGggDy 280
                        l+ p++Fq ggD+
     KKY20290.1  31 ESVVLQAPKFFQTGGDL 47 
                    55668899******996 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.22
  Haspin_kinase 308 lhyLavkLlkkknkklnseaekrvkerleklaklld 343
                    ++y+  k+l ++ ++l+ e+++   ++l +++++l 
     KKY20290.1 117 MQYIPGKILAQTIENLDEEQTRDLTSQLTRILNTLH 152
                    678889999999999999999999999999999985 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 7.7e-05
  Haspin_kinase 230 HRdLhldniLvdknlnvtlidlklsR 255
                    H d hldn L+d+++n  lid+ ++ 
     KKY20290.1 221 HMDVHLDNLLLDDSGNLWLIDWDCAG 246
                    99*********************985 PP

>> DUF5330  Family of unknown function (DUF5330)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.042   1.5e+02      38      58 ..     103     123 ..     100     129 .. 0.86
   2 ?    7.2   0.0    0.0014       4.9      28      57 ..     254     283 ..     253     290 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.042
     DUF5330  38 taigeRAreGAriayelldek 58 
                 +++g +A+e++ i+ +++  k
  KKY20290.1 103 QHTGRQAKESVYIVMQYIPGK 123
                 68899************9665 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0014
     DUF5330  28 dvCetGkealtaigeRAreGAriayellde 57 
                 +vC +G + +  +g R  +G++++  ++d+
  KKY20290.1 254 YVCLKGYAEFMPLGTRSAAGVKFLKAVIDS 283
                 59*************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 1976.46
//
Query:       KKY20291.1  [L=823]
Description: putative actin cytoskeleton organization protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-38  132.1   1.8      5e-38  130.5   0.1    2.8  3  UNC45-central  Myosin-binding striated muscle assembly centra
  ------ inclusion threshold ------
       0.11   12.6  14.8        2.3    8.4   0.0    6.2  7  Arm            Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> UNC45-central  Myosin-binding striated muscle assembly central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.37   3.3e+03     123     133 ..     167     177 ..     111     207 .. 0.54
   2 !  130.5   0.1   5.5e-42     5e-38       2     153 .]     211     361 ..     210     361 .. 0.98
   3 ?   -1.6   0.0      0.27   2.4e+03      26      60 ..     507     542 ..     485     557 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.37
                    HHHHHHHHHHH CS
  UNC45-central 123 knyvewLeelv 133
                    +   ++L + +
     KKY20291.1 167 EDLFQLLLAKL 177
                    22233333333 PP

  == domain 2  score: 130.5 bits;  conditional E-value: 5.5e-42
                    HHHHHHHHC-T---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHHHHHSSHHHHHHHHTSTTHHHHHHHHHHS..S CS
  UNC45-central   2 hldlllkfldmrqpesvrslallilsklldaakeefeeaiseflesllekgdeddllnalsvltalFpvvpdvasalflsegflesllelves.kk 96 
                    ++d +l++ld r pe+v+s all +sk+l+ a++e+++++++++ ++le++++dd+l+a+s+++a+Fp++  ++++lfl+egfl+s+++l ++  k
     KKY20291.1 211 SFDAILSSLDFRLPEDVKSSALLSISKYLEVAQDEGQKYFTNYVVAKLERQRKDDMLIAFSAAAAVFPIAQPMTASLFLTEGFLPSIMPLFNTkFK 306
                    6899****************************************************************************************999* PP

                    -HHHHHHHHHHHHTT--SSSSSHHHHHHHHHHHHHHHH-SSHH..HHHHHHTTSST- CS
  UNC45-central  97 skkvqlaalellsaAcidkkcrkaiaknyvewLeelvkssddeklvkalAavvLaKL 153
                    +  + +a l+ll+aA++d++cr ai  ++++wL+  v + + + +   lAa vLaK+
     KKY20291.1 307 NPAIITAFLKLLNAAAMDEACRGAIIRHCSDWLSYTVSNGSSDDT--PLAATVLAKI 361
                    ***************************************999955..9********7 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.27
                    HHHHH.HHHHHHHHHHHHHHHHHHHSCCTHHHHHHH CS
  UNC45-central  26 lskll.daakeefeeaiseflesllekgdeddllna 60 
                    l+ +  +++ +++++ is++l sl ++ ++  +++ 
     KKY20291.1 507 LVDCNtKSKSASTKQLISNILLSLSKDAKSRGKIAQ 542
                    333333444555555566666655555555555554 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.46   4.1e+03      33      40 ..     186     193 ..     186     193 .. 0.89
   2 ?    8.4   0.0   0.00025       2.3       6      22 ..     496     512 ..     492     521 .. 0.79
   3 ?    6.4   0.0    0.0011       9.7       8      25 ..     540     557 ..     533     561 .. 0.84
   4 ?   -1.1   0.1      0.25   2.3e+03      30      41 .]     632     643 ..     631     643 .. 0.82
   5 ?    2.8   0.2     0.014   1.3e+02      19      40 ..     663     684 ..     650     685 .. 0.88
   6 ?   -0.9   0.1      0.21   1.9e+03      16      36 ..     708     728 ..     706     731 .. 0.86
   7 ?   -4.0   0.1         2   1.8e+04      34      40 ..     770     776 ..     768     776 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.46
                 HHHHHHHT CS
         Arm  33 awALsNLa 40 
                 a+AL+N+a
  KKY20291.1 186 ARALRNIA 193
                 78****97 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00025
                 HHHHHTTHHHHHHHHTT CS
         Arm   6 davieaGavppLvrLLs 22 
                  av++aG++p Lv++ +
  KKY20291.1 496 AAVVDAGVLPLLVDCNT 512
                 69***********9855 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0011
                 HHHTTHHHHHHHHTTTSS CS
         Arm   8 vieaGavppLvrLLssed 25 
                 + ++Gav+ L+++L s+ 
  KKY20291.1 540 IAQQGAVRLLLQMLGSGE 557
                 889***********9765 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.25
                 HHHHHHHHHHTT CS
         Arm  30 eeAawALsNLaa 41 
                 +e++ AL+NLa+
  KKY20291.1 632 FESLLALTNLAS 643
                 57788*****96 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.014
                 HHTTTSSHHHHHHHHHHHHHHT CS
         Arm  19 rLLssedeevqeeAawALsNLa 40 
                 +LL s +  +q++A+  ++NL 
  KKY20291.1 663 DLLLSSHRYLQRAACELVCNLM 684
                 7999****************96 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 0.21
                 HHHHHTTTSSHHHHHHHHHHH CS
         Arm  16 pLvrLLssedeevqeeAawAL 36 
                  L++L + ed +++++A + L
  KKY20291.1 708 LLLALCDVEDLQTRKAAGGGL 728
                 6999999********998776 PP

  == domain 7  score: -4.0 bits;  conditional E-value: 2
                 HHHHHHT CS
         Arm  34 wALsNLa 40 
                  +L+NL+
  KKY20291.1 770 VCLRNLT 776
                 69***96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (823 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.47
# Mc/sec: 5305.35
//
Query:       KKY20292.1  [L=447]
Description: putative transcription factor tfiih subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.4e-96  320.9   6.1    1.4e-93  313.4   6.1    2.3  1  Tfb4          Transcription factor Tfb4


Domain annotation for each model (and alignments):
>> Tfb4  Transcription factor Tfb4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.4   6.1   7.6e-98   1.4e-93       1     276 []      19     395 ..      19     395 .. 0.88

  Alignments for each domain:
  == domain 1  score: 313.4 bits;  conditional E-value: 7.6e-98
        Tfb4   1 pslltvvldtnpkawaeleekltlsevlasllvflNahLalnaaNkvaviashsqkakflYpseek...............ekeaskkkdvelskssk. 83 
                 pslltv+ldtnp+aw+ l+++l+ls++++++l f+NahLa+n++Nkvaviash+++ak+lYp+++                 +++++++d+++sk+ + 
  KKY20292.1  19 PSLLTVILDTNPAAWSILADDLSLSAAISDILIFINAHLAFNYTNKVAVIASHCSSAKWLYPTPSPqadpavrpaskrktsLSTSQQDRDTDISKKARt 117
                 79*************************************************************998899999988888766333333344444443336 PP

        Tfb4  84 ..........................nkyrefrlvdelvveelkellsetskaeekaek.sllagalslaLcyinrvsklaeaea.............. 141
                                           nkyr+frlv+e v+++l+++ls+t+k+e ++++ +++agal+laL+yinr+  la aea              
  KKY20292.1 118 ddstvspaklklklknpriisleansNKYRPFRLVEEEVIKNLSSILSTTTKTEVANTTsTMIAGALTLALSYINRE-MLAYAEAnggggnranatdps 215
                 7899999***********************************************999998999*************9.556666669************ PP

        Tfb4 142 .............eklksRilv..vsaskdsalqyipimNviFaaqklkipidvvkl...................gg.kdsafLqQasdaTkGvylkv 205
                              ++l+sRil+  vs s+d a+qyipimN+iFa+q+l+ipid++++                   ++ + ++fLqQasdaT+G+y+ +
  KKY20292.1 216 tqptasitpssgsQSLQSRILLisVSPSTDLAHQYIPIMNSIFACQRLSIPIDICQIplsssrifpgstpdntttsQNsTSTVFLQQASDATHGIYIPL 314
                 ********************99888999***************************9855555555544443333221223568**************98 PP

        Tfb4 206 ke..........pkgllqyLltaflidqssRsllvlptrvsVdfRasCfchrkvvdiGfvCSvCLsilceispenkCktCe 276
                               +llqyLl afl+ +++R+ l+lptr++VdfRa+Cfchr++vdiGfvCS+CLsi+c + + ++C tC+
  KKY20292.1 315 PTavsssspqkpSWSLLQYLLFAFLPSNTTRRSLILPTRIDVDFRAACFCHRRIVDIGFVCSICLSIFCSVPEAGECLTCG 395
                 776777787766679********************************************************5555*****6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2836.85
//
Query:       KKY20293.1  [L=779]
Description: putative pre-mrna splicing factor rna helicase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.3e-22   77.7   0.0      6e-21   74.6   0.0    2.4  2  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    9.2e-19   67.7   0.0    2.5e-18   66.3   0.0    1.8  1  HA2          Helicase associated domain (HA2)
    7.5e-11   42.4   0.0    2.1e-10   40.9   0.0    1.8  1  Helicase_C   Helicase conserved C-terminal domain
      3e-06   27.1   0.1    6.3e-06   26.1   0.1    1.5  1  DEAD         DEAD/DEAH box helicase
    8.2e-06   26.1   0.0    2.5e-05   24.6   0.0    1.8  1  AAA_22       AAA domain
     0.0003   20.5   0.1    0.00086   19.0   0.1    1.7  1  SRP54        SRP54-type protein, GTPase domain
     0.0088   16.0   0.0      0.016   15.1   0.0    1.4  1  Flavi_DEAD   Flavivirus DEAD domain
  ------ inclusion threshold ------
      0.015   14.4   0.0      0.029   13.4   0.0    1.4  1  T2SSE        Type II/IV secretion system protein
      0.016   14.9   0.0       0.03   14.0   0.0    1.4  1  AAA_30       AAA domain
      0.019   15.5   0.0      0.036   14.6   0.0    1.5  1  AAA_23       AAA domain
      0.072   12.6   0.0       0.18   11.3   0.0    1.6  1  AAA_7        P-loop containing dynein motor region
       0.15   12.1   0.0         18    5.3   0.0    2.4  2  ResIII       Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.84   1.3e+03      44      64 ..     133     154 ..      71     163 .. 0.70
   2 !   74.6   0.0     4e-24     6e-21       1      83 []     660     737 ..     660     737 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.84
                  ...TSSSEEEEEEEEESSS.EE CS
  OB_NTP_bind  44 ekekepewvvytelvettk.ly 64 
                  ++++ p++v++  l +t k l 
   KKY20293.1 133 KTTQIPQFVLFDDLPQTEKkLV 154
                  4456688999999999988344 PP

  == domain 2  score: 74.6 bits;  conditional E-value: 4e-24
                  HHHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHHSTTT CS
  OB_NTP_bind   1 lraillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLllfagqi 83 
                  +r++l++G+++q+a+k+ ++k+y t+++++ v++hps+vl      +++ewvvy+e+v t+k+y+r++t + ++wLl +a+++
   KKY20293.1 660 IRRALVSGFFMQVAKKEANGKTYVTVKDNQSVLLHPSTVLG-----QDSEWVVYNEFVLTSKNYVRTVTGVKAEWLLDIAPNY 737
                  799**************************************.....6*********************************986 PP

>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   1.7e-21   2.5e-18       1     108 []     507     595 ..     507     621 .. 0.90

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 1.7e-21
         HA2   1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeeeeeekakkkrkeeekarrklahk 99 
                 Ale L +l +Ld++gnlT lGr  +e+Pl+p la mL+ +   e+ c +e++++ A+lsv ++f+++++++               k+++++++ +ah+
  KKY20293.1 507 ALEELNYLACLDDDGNLTHLGRLASEFPLDPALAVMLISS--PEFYCSNEILSLTALLSVPQVFVRPASAR---------------KRADEMKNLFAHP 588
                 899*************************************..556***********************754...............5556666778888 PP

         HA2 100 daegDhltl 108
                 d  gDhltl
  KKY20293.1 589 D--GDHLTL 595
                 8..999986 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   1.4e-13   2.1e-10       6     110 ..     305     444 ..     297     445 .. 0.80

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 1.4e-13
                 HHHHHHHTTTTSEEEEEESSHHHHHH.........HHHHHHHT........TSTEEEESTTSTHHHHHHHHHHHH..TTS......SSEEEESGGGTSS CS
  Helicase_C   6 llellkleeeggkilifvntidrlek.........vklllekk........gikvavlhgelpqnereeileqfn..kge......sdvLiatdvaerG 79 
                 +l++ + +e +g+il+f++  +++e+                +         +kv +l+g+lp  ++++i+e     + +      ++++++t++ae++
  KKY20293.1 305 VLQI-HATEPEGDILLFLTGEEEIEDavrkitleaD------EmireadagPLKVYPLYGTLPPAQQQRIFEPAPppR-KaggrpgRKCIVSTNIAETS 395
                 4444.68999************99878533333323......0344445767**********************8651.145566689*********** PP

                 STSTTESEEEESSSSSSH..................HHHHHHHTTSSST CS
  Helicase_C  80 idipkvnlVinfdlprnv..................tsyiqriGRtgRa 110
                 ++i+++ +V++ ++ ++                   +s++qr+GR+gR 
  KKY20293.1 396 LTIDGIVYVVDPGFSKQKvynprirvesllvspiskASAQQRAGRAGRT 444
                 ***************5533677999999********************6 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.1   4.2e-09   6.3e-06      10     172 ..     116     265 ..     107     269 .. 0.70

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 4.2e-09
                 HHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  10 lilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtpgrl 108
                 l  + + ++  +eTGsGKT+   ip +  + +  +++++ + +  P r  a  +++++ + ++ ++l ++  +g  + r + ++   ++ + ++t g+l
  KKY20293.1 116 LYQQSQILVFVGETGSGKTTQ--IPQFVLFDDLPQTEKKLVACTQPRRVAAMSVAQRVAEEMD-VNLGEE--VG-YNIRFENNTG-PKTILSYMTDGML 207
                 334445566899*******97..4444334333789999999****************99999.344443..23.2233333333.3466789999**9 PP

                 HH.HHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HH CS
                 xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
        DEAD 109 dd.llstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kd 172
                 ++  ++++   l + ++++lDEa++       d +  +l+++     d  l+  +i++SATl  ++
  KKY20293.1 208 LReAMNDHD--LTRYSTIILDEAHERTLA--TDVLMGLLKEVVLRRPD--LK--LIIMSATLDaQK 265
                 994456666..*************98876..78888888888433333..44..********8665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.7e-08   2.5e-05       4     104 ..     119     232 ..     115     265 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.7e-08
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka...................erlsseelleale 83 
                 + +ilv +Ge+G+GKTt + +++  +d      + ++++v +t p      +++++++++++++l +                   +  +   l+ea++
  KKY20293.1 119 QSQILVFVGETGSGKTTQIPQFVLFDDL----PQTEKKLVACTQPRRVAAMSVAQRVAEEMDVNLGEevgynirfenntgpktilsYMTDGMLLREAMN 213
                 6789*********************963....223555555555555599999*********999999********87777777755555555557777 PP

      AAA_22  84 qalraravielliiDEaqhlr 104
                 ++  +r+    +i+DEa+  +
  KKY20293.1 214 DHDLTRYS--TIILDEAHERT 232
                 77666666..9*******843 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   5.8e-07   0.00086       2     130 ..     121     266 ..     120     274 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 5.8e-07
                 EEEEEEESTTSSHHHHHHHHHHHHHHT.TS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEE.........SSTTSCHHHH.........HHHHHHHHHH CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkke.gkkvllvaaDtfRaaAveQLktlaeklgvpvik.........kkeeadpaav.........akeavekake 81 
                 +++++vG +G+GKTt + +          +k l++++   R+aA+   + +ae+++v++ +         +  ++ p ++         ++ea++  + 
  KKY20293.1 121 QILVFVGETGSGKTTQIPQFVLFDDLPqTEKKLVACTQPRRVAAMSVAQRVAEEMDVNLGEevgynirfeN--NTGPKTIlsymtdgmlLREAMNDHDL 217
                 5789***************99776654488889999999*****************998766666666432..22333221111111114567777777 PP

                 TTSSEEEEEE--SSTTHHHHHHHHHHHHHHHSSSEEEEEEETTBHTHHH CS
       SRP54  82 ekidvvlvDTaGrlqndkelmeelkkikkvvkpdevllvldattgqeav 130
                  ++ ++++D a      ++++  l k     +pd +l++++at+  +++
  KKY20293.1 218 TRYSTIILDEAHERTLATDVLMGLLKEVVLRRPDLKLIIMSATLDAQKF 266
                 7788888888877777777776666666666888888888888776665 PP

>> Flavi_DEAD  Flavivirus DEAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.1e-05     0.016      11     135 ..     127     260 ..     117     266 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
                 --TTS-TTTTHHHHHHHHHHHTT--EEE..EESSHHHHHHHHHHT.T......TS-EEE-------------SEEEEEHHHHHHHHHHT------SEEE CS
  Flavi_DEAD  11 lhPGaGktrkvlpelvkeaierrlrtlv..LaPtrvvlaemeeal.k......glevryktsavkeektgrelvdvmchatftkrllspvrkknyelii 100
                    G+Gkt ++   ++ + + +  + lv    P rv +  +++ + +      g ev y+ + +++++  + ++  m    + +  ++++  ++y  ii
  KKY20293.1 127 GETGSGKTTQIPQFVLFDDLPQTEKKLVacTQPRRVAAMSVAQRVaEemdvnlGEEVGYNIR-FENNTGPKTILSYMTDGMLLREAMNDHDLTRYSTII 224
                 55688888765333333333333333331134666655554443313000101334555444.447778899*************************** PP

                 EETTT--SHHHHHHHHHHHHHH.HTTS-EEEEEESS CS
  Flavi_DEAD 101 mDeahflDPasiaarGyletka.eegeaalilltat 135
                 +Deah    a     G l++ + ++ + +li+++at
  KKY20293.1 225 LDEAHERTLATDVLMGLLKEVVlRRPDLKLIIMSAT 260
                 *****8887777788888776524557888888887 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.9e-05     0.029     113     167 ..     105     160 ..      84     182 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.9e-05
       T2SSE 113 alkekiaevlrkavrerglilvsGgTgsGKttll..yallkeinksderivtvEDpv 167
                  ++++ +e+l+   ++ +++++ G TgsGKtt +   +l   ++++++++v    p+
  KKY20293.1 105 PVHAQRDEFLQLY-QQSQILVFVGETGSGKTTQIpqFVLFDDLPQTEKKLVACTQPR 160
                 4567788899988.778888999*********9976777788888888888766655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     2e-05      0.03       5      98 ..     108     229 ..     106     256 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2e-05
      AAA_30   5 eQaaavealltsgdrvavltGpAGtGKttalkalreaweaag...........grviglAptgkaAkvLaeelgieastiakllkrlk........... 81 
                  Q++ + +l ++++ + v +G  G+GKtt + + +   +  +           +rv++++  +++A+++  +lg e     ++ ++++           
  KKY20293.1 108 AQRDEFLQLYQQSQ-ILVFVGETGSGKTTQIPQFVLFDDLPQtekklvactqpRRVAAMSVAQRVAEEMDVNLGEEVGYNIRFENNTGpktilsymtdg 205
                 58888888888886.****************99865443332344799999999999999999999999955553222222222222233333333445 PP

      AAA_30  82 .......grarlepgtllivDEag 98 
                        +  +l++ + +i DEa 
  KKY20293.1 206 mllreamNDHDLTRYSTIILDEAH 229
                 555566755789999999999996 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.4e-05     0.036      17     148 ..     116     268 ..     106     344 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.4e-05
      AAA_23  17 F..skgltlItGpNGaGKTTildAiklaLygetprlsrks...............grgfeksdveiesegkvkay.veltfenkdgry........... 86 
                 +   + + +++G++G+GKTT     +++L+ + p++++k                +r +e+ dv+++     +++ + ++fen++g +           
  KKY20293.1 116 LyqQSQILVFVGETGSGKTTQ--IPQFVLFDDLPQTEKKLvactqprrvaamsvaQRVAEEMDVNLG-----EEVgYNIRFENNTGPKtilsymtdgml 207
                 45567899************5..58999999999988877888887766665555445555555543.....344589999999998888888888777 PP

      AAA_23  87 trsiererelskkkgkttkkaklelleideleqfisellgskkiilnlilflgqerfeefel 148
                  r+  ++  l++ ++   ++a ++ l +d l  +++e +  + + l+li++ +  ++++f++
  KKY20293.1 208 LREAMNDHDLTRYSTIILDEAHERTLATDVLMGLLKE-VVLRRPDLKLIIMSATLDAQKFQR 268
                 5555567777777777777778888888777777775.455567788888888888877776 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00012      0.18      28      76 ..     115     165 ..     110     183 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
       AAA_7  28 lllknkkpvllvGptGtGKtviikd..llkkldkekylsltinfsaqtsan 76 
                 +l ++++ +++vG+tG+GKt+ i +  l++ l++++ + + ++   +  a+
  KKY20293.1 115 QLYQQSQILVFVGETGSGKTTQIPQfvLFDDLPQTEKKLVACTQPRRVAAM 165
                 5678888999************99976667777666666655555555555 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.012        18      22      39 ..     118     135 ..      88     156 .. 0.74
   2 ?    4.2   0.0     0.025        38     123     169 ..     210     261 ..     165     263 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.012
                 .TTSEEEEEESTTSTHHH CS
      ResIII  22 krdkrglikmaTGtGKTl 39 
                 ++ + ++++ +TG+GKT 
  KKY20293.1 118 QQSQILVFVGETGSGKTT 135
                 4555666**********7 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.025
                 ....HHHTTT-SEEEEETGGGTTS.T.....TTHHHHHT---SEEEEEESS- CS
      ResIII 123 eeseellrdrfdviiiDEaHrlgakk.....swreilekfkeavllglTATp 169
                 e+ ++ + +r+  ii DEaH  + ++       +e++   ++ +l+ ++AT+
  KKY20293.1 210 EAMNDHDLTRYSTIILDEAHERTLATdvlmgLLKEVVLRRPDLKLIIMSATL 261
                 555666777888********87764344444555554444667777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (779 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 5117.43
//
Query:       KKY20294.1  [L=631]
Description: putative serine threonine-protein kinase nrc-2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-74  248.9   0.0    7.4e-74  248.4   0.0    1.2  1  Pkinase         Protein kinase domain
    4.8e-30  104.7   0.0    1.4e-21   77.0   0.0    2.1  2  Pkinase_Tyr     Protein tyrosine kinase
    1.2e-06   28.0   0.1        0.8    9.0   0.0    3.1  3  Kinase-like     Kinase-like
     0.0096   14.7   0.0      0.016   14.0   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.027   13.8   0.0      0.043   13.2   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
       0.11   12.4   0.0        1.4    8.8   0.0    2.1  2  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.4   0.0   2.5e-77   7.4e-74       2     264 .]     249     539 ..     248     539 .. 0.94

  Alignments for each domain:
  == domain 1  score: 248.4 bits;  conditional E-value: 2.5e-77
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHH.HHHH..HHSS-- CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggela.dlle..rkgsls 96 
                  k++ +G+G++GkVy ++ek++++ +A+K+++k+++ k+++ k++l+E +il++++hp+iv+ly++f+++d+lyl++ey++gge++ ++l+    ++++
  KKY20294.1 249 DKIKLIGKGDVGKVYLVREKKSNRLYAMKVLSKKEMIKRNKiKRALAEQEILATSNHPFIVTLYHSFQSEDHLYLCMEYCSGGEFFrEALQtrPGKCVA 347
                 68899******************************9999999******************************************6615666755566** PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS............................BCTTTSCGGGS-HH CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk............................ltsfvgtseYlAPE 167
                 e++a+++a+++ ++leylH +g+i+rDlKpeNiL++++g+++++DF+l+k+ +++                              ++sfvgt+eY+APE
  KKY20294.1 348 EDDARFYAAEVTAALEYLHLMGFIYRDLKPENILLHQSGHIMLSDFDLSKQSDTGGAptmifgkagnnsngyplvdtksciadfrTNSFVGTEEYIAPE 446
                 ******************************************************9999***************************************** PP

                 HHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT....HHHHHTSG CS
     Pkinase 168 vlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt....aeellqhp 262
                 v+k+ +++++vD+W+lG+++ye+l+g++pf+g++++ +++++l++        +    +   a+++s+ +k++++kll kd++kRl+    a+e+++hp
  KKY20294.1 447 VIKGCGHTSAVDWWTLGILIYEMLFGTTPFKGKNRNATFANILRD--------EVPFPEHSGAQQVSPLCKSVIRKLLIKDENKRLGsragASEVKNHP 537
                 *************************************99999999........2223355677899********************99999******** PP

                 GG CS
     Pkinase 263 yl 264
                 ++
  KKY20294.1 538 FF 539
                 98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.0   4.7e-25   1.4e-21       4     153 ..     251     399 ..     248     406 .. 0.89
   2 !   25.6   0.0   2.2e-09   6.5e-06     170     227 ..     441     498 ..     430     525 .. 0.79

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 4.7e-25
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE..STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEB.HHHHHHHTCTT CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtl..keeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGd.LlkfLrkkeke 98 
                   k +G+G  GkV+  + k    k++   a+K+l  ke  ++++ ++ l e +i+ + +hp iv l+    +e++l++ +ey++gG+ +++ L+++  +
   KKY20294.1 251 IKLIGKGDVGKVYLVREK----KSNRLYAMKVLskKEMIKRNKIKRALAEQEILATSNHPFIVTLYHSFQSEDHLYLCMEYCSGGEfFREALQTRPGK 344
                  6789*********99999....5556666666632456667778999**************************************73589*****999 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi 153
                   +  +d   +a++v +++eyL+ + ++ rdl   N+Ll+++ ++ +sDf L+++ 
   KKY20294.1 345 CVAEDDARFYAAEVTAALEYLHLMGFIYRDLKPENILLHQSGHIMLSDFDLSKQS 399
                  9999999999******************************************986 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 2.2e-09
                  GGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTS.HHHHHHHHHHTTEES-BB CS
  Pkinase_Tyr 170 kWmapEslkekkftsksDvWsfGvllwEiftlgespypgl.kneevleklkegkrlekp 227
                  +++apE++k +  ts+ D W  G+l++E++  g +p++g  +n+++++ l+++   ++ 
   KKY20294.1 441 EYIAPEVIKGCGHTSAVDWWTLGILIYEMLF-GTTPFKGKnRNATFANILRDEVPFPEH 498
                  799**************************98.********5666666666766555443 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0011       3.3      16      66 ..     250     301 ..     240     327 .. 0.88
   2 !    9.0   0.0   0.00027       0.8     155     189 ..     360     394 ..     331     408 .. 0.82
   3 !    8.6   0.0   0.00035         1     228     262 ..     454     497 ..     447     523 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0011
  Kinase-like  16 rgellkkgdrsvvfevkdqetgeplavkvfllpseaskkdler.lkeqelai 66 
                  + +l++kgd ++v++v++++ +   a+kv + ++   +++++r l eqe+++
   KKY20294.1 250 KIKLIGKGDVGKVYLVREKKSNRLYAMKVLSKKEMIKRNKIKRaLAEQEILA 301
                  6789************************************998456666655 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00027
  Kinase-like 155 rlaanLqakglvhgkftvdnllldekgglmlggft 189
                      +L+  g +  +++++n+ll++ g +ml +f+
   KKY20294.1 360 AALEYLHLMGFIYRDLKPENILLHQSGHIMLSDFD 394
                  456799***************************96 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00035
  Kinase-like 228 thkldaWqlGlviyriwclklPltlateeakeew.........k 262
                  t ++d W+lG+ iy +   + P+  +  +a  +          +
   KKY20294.1 454 TSAVDWWTLGILIYEMLFGTTPFKGKNRNATFANilrdevpfpE 497
                  7899*******************999888776663344443333 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   5.3e-06     0.016     317     395 ..     360     457 ..     355     461 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.3e-06
  Pkinase_fungal 317 kghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddsses......gare.....................rtGTleFmaie 384
                     ++++ L+   g++ rD   +Nil+      ++ + +L+D+Dl k+ ++  +        g  +                      +GT e++a e
      KKY20294.1 360 AALEYLH-LMGFIYRDLKPENILLH-----QSGHIMLSDFDLSKQSDTGGAPTmifgkaG--NnsngyplvdtksciadfrtnsFVGTEEYIAPE 446
                     6778888.89***************.....7899*************7555546665550..14455555556666666666669********** PP

  Pkinase_fungal 385 vlkgeeHsyrh 395
                     v+kg+ H+   
      KKY20294.1 447 VIKGCGHTSAV 457
                     ****99*9765 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.4e-05     0.043     124     171 ..     355     398 ..     335     404 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.4e-05
         Kdo 124 lkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarl 171
                   +v ++ + lh +g   +dl + nill+q +    +i+l D+d +++
  KKY20294.1 355 AAEVTAALEYLHLMGFIYRDLKPENILLHQSG----HIMLSDFDLSKQ 398
                 5678899999**********************....*******98876 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.081   2.4e+02       3      84 ..     252     335 ..     250     345 .. 0.74
   2 ?    8.8   0.0   0.00046       1.4     145     196 ..     352     396 ..     331     401 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.081
                 EEE--.SSCEEEEEEETT..--EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS CS
         APH   3 relsggasnrtylvttpa..gryvlrrnppa..raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr 84 
                 + ++ g   ++ylv +++  + y++++ +++     ++i r +a+   La ++ p  + l+   + + + +l++ +ey+ g  + r
  KKY20294.1 252 KLIGKGDVGKVYLVREKKsnRLYAMKVLSKKemIKRNKIKRALAEQEILATSNHPFIVTLY--HSFQSEDHLYLCMEYCSGGEFFR 335
                 5666677778999999997568999998888888999999999999999988776555555..46666666678888888887777 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00046
                 HHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 145 leeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                 +  ++e v aal+ l +    ++++ +Dl+p N+l+++  g++  + Df+++
  KKY20294.1 352 RFYAAE-VTAALEYLHL----MGFIYRDLKPENILLHQS-GHI-MLSDFDLS 396
                 455555.6666666666....99**************44.555.36688776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.53
# Mc/sec: 3610.43
//
Query:       KKY20295.1  [L=110]
Description: putative dash complex subunit dad1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-21   75.6   0.3    3.1e-21   75.3   0.3    1.1  1  DASH_Dad1  DASH complex subunit Dad1


Domain annotation for each model (and alignments):
>> DASH_Dad1  DASH complex subunit Dad1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.3   1.7e-25   3.1e-21       2      55 .]      21      74 ..      20      74 .. 0.98

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 1.7e-25
   DASH_Dad1  2 FerqRdrliqeIaesmeevlnnlnaLNRsLEeviavgkeFesVaaLWssFynvm 55
                Fe +R +l+++I  s+e+vl+++naLNRsLE +ia+g++F+sV+aLWs+F+++m
  KKY20295.1 21 FELRRGELVADIGDSLETVLQQINALNRSLEGIIAIGNDFSSVEALWSQFETIM 74
                9***************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 758.78
//
Query:       KKY20296.1  [L=233]
Description: putative rho gtpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-48  163.5   0.0    3.5e-48  163.3   0.0    1.1  1  Ras       Ras family
    3.7e-21   75.6   0.0    5.5e-21   75.0   0.0    1.3  1  Roc       Ras of Complex, Roc, domain of DAPkinase
    4.5e-05   23.0   0.0    9.6e-05   21.9   0.0    1.6  1  Arf       ADP-ribosylation factor family
     0.0012   18.4   0.0     0.0019   17.7   0.0    1.3  1  AAA_7     P-loop containing dynein motor region
  ------ inclusion threshold ------
      0.039   13.4   0.0      0.055   12.9   0.0    1.3  1  SRPRB     Signal recognition particle receptor beta subunit


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.3   0.0   9.8e-52   3.5e-48       1     159 [.      24     195 ..      24     198 .. 0.96

  Alignments for each domain:
  == domain 1  score: 163.3 bits;  conditional E-value: 9.8e-52
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEET..TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHH.HHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievd..gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvk.kwvee 96 
                 K+v+vGd+++GKt+ll+++ +++F+e+y +T+ +++y+++++    gk+v+l +wDTAGqee+++lr+l+y +++ ++++++i+  +s+env  kw+ e
  KKY20296.1  24 KFVVVGDGGCGKTCLLISYSQGYFPEKYVPTV-FENYITQTTHAqtGKTVELALWDTAGQEEYDRLRPLSYPETDLLFVCFAIDCPNSLENVMdKWYPE 121
                 89******************************.99998877766579*********************************************99***** PP

                 HHHHSTTTSEEEEEEETTTGGG............G-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHH CS
         Ras  97 ikrvaeenvpivLvGnKvDlee............kravsteegeelakelglkfletSAktnenveeafeellre 159
                 + + ++ ++p++LvG K+Dl++               v+  +g+++a+++g++++e+S k+ ++v+e+fe ++++
  KKY20296.1 122 VLHFCP-TTPLILVGLKSDLRSkktcidllktqgLTPVTPGQGQAVARRMGAMYVECSSKEMTGVHEVFELAVNT 195
                 ******.5***********************999999*********************************99876 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0   1.5e-24   5.5e-21       1     119 [.      24     139 ..      24     140 .. 0.88

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 1.5e-24
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHC.H CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssen.l 95 
                 K v+vGd+g GKt+ll ++ ++ f ek+ +t+  +++t++++        ++ k+v+l++WDtaGqe+++ l+pl + e +l+++++     +s en +
  KKY20296.1  24 KFVVVGDGGCGKTCLLISYSQGYFPEKYVPTVFENYITQTTH-------AQTGKTVELALWDTAGQEEYDRLRPLSYPETDLLFVCFAidcPNSLENvM 115
                 899*********************************998752.......2345789*************************999998644644545516 PP

                 HHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  96 keWlkelkkvagkspvilvgnkiD 119
                 ++W+ e+ + ++++p+ilvg k D
  KKY20296.1 116 DKWYPEVLHFCPTTPLILVGLKSD 139
                 99********************99 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.7e-08   9.6e-05      14      93 ..      22     109 ..      11     195 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.7e-08
                 EEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEEEEEE.....TTEEEEEEEE-SSGGGGGGGGGGCTTESE..EEEEEETT- CS
         Arf  14 elrilllGLDnaGKtTilkklkleelvt.tvPTigfnveelei.....knlkftvwDvGGqeklRplWknYfektda..vifvvDsad 93 
                 + + +++G  + GKt +l  ++++ + +  vPT+  n  + ++     k++++ +wD  Gqe+  +l    +++td   v f +D+ +
  KKY20296.1  22 SKKFVVVGDGGCGKTCLLISYSQGYFPEkYVPTVFENYITQTThaqtgKTVELALWDTAGQEEYDRLRPLSYPETDLlfVCFAIDCPN 109
                 568999******************9976489**9877544333356669**************999999999**99722467788854 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.3e-07    0.0019      32      85 ..      21      75 ..      14      82 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.3e-07
       AAA_7 32 nkkpvllvGptGtGKtviikdllkkldkekylslti.nfsaqtsanqlqdiiesk 85
                 +k++++vG+ G+GKt+++ ++ + + +eky+++++ n   qt+ +q+ +++e  
  KKY20296.1 21 YSKKFVVVGDGGCGKTCLLISYSQGYFPEKYVPTVFeNYITQTTHAQTGKTVELA 75
                578999******************99999999877648999*******9999865 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.5e-05     0.055       2      61 ..      21      84 ..      20     116 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.5e-05
                ---EEEEE-STTSSHHHHHHHHHHS....S---B---SS-EEETTG.....GGTT-SEEEETT-GC CS
       SRPRB  2 skpavllvGlsdsGKTslftrLttd....svkktvtSqessaalkv..ksekgskltliDfPGhek 61
                +++++++vG   +GKT l+   +++    ++ +tv   e+ +++ +  ++ k  +l+l D  G+e+
  KKY20296.1 21 YSKKFVVVGDGGCGKTCLLISYSQGyfpeKYVPTVF--ENYITQTThaQTGKTVELALWDTAGQEE 84
                57899********************54444444443..7777776621445555666778888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.32s 00:00:00.84 Elapsed: 00:00:00.51
# Mc/sec: 1378.04
//
Query:       KKY20297.1  [L=619]
Description: putative sphingosine-1-phosphate phosphohydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-30  103.3   0.1    8.8e-30  102.5   0.1    1.4  1  UPF0086    Domain of unknown function UPF0086
  ------ inclusion threshold ------
      0.074   12.3   0.0       0.12   11.6   0.0    1.2  1  Lactonase  Lactonase, 7-bladed beta-propeller


Domain annotation for each model (and alignments):
>> UPF0086  Domain of unknown function UPF0086
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.1   9.8e-34   8.8e-30       3      84 .]     510     609 ..     508     609 .. 0.98

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 9.8e-34
                 HCCSXXSS-EEEEEECSSTTTTTEEEEEEEEETTEEEEEECTTEEEEEESTTCEEEEEE...................TTEEEEEECCCCSSXHHHHHC CS
     UPF0086   3 LlkadlhGaeveVvrsknpslvgikGiVvkEtkntlkivtkksrvktvpKegsvFefev..................kdvlevevdGsqlryrpadRae 83 
                 L++ad+hGae+eVvrs++  +vg kGiVv++tk+t++i+t+++++kt+pK+  vF++e+                  ++ l++e++G+q++yrpadRa+
  KKY20297.1 510 LATADYHGAEIEVVRSNCVGRVGAKGIVVRDTKFTFVIITRRNELKTIPKDRNVFRIEIpvpsrenqegrksprangQEPLRFEIHGEQFQYRPADRAN 608
                 889**************************************************************************8899*****************9 PP

                 H CS
     UPF0086  84 r 84 
                 +
  KKY20297.1 609 K 609
                 7 PP

>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.3e-05      0.12      78     126 ..     484     536 ..     471     544 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.3e-05
                 EEEEE.....SSS-EEEEEE-TTSSEEEEEETTTTEEEEEEB.TTSEBESECE CS
   Lactonase  78 lnkvss....egaspchlsvdedgkllavAnYsggsvsvfpldadgslkeasq 126
                 +n++++    ++++++ ++v   g +la+A+Y+g++++v++ +  g+++++  
  KKY20297.1 484 TNQQQQrgnmNANPNVDITVAGHGTFLATADYHGAEIEVVRSNCVGRVGAKGI 536
                 4444443334677888999999******************9998888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4109.36
//
Query:       KKY20298.1  [L=429]
Description: hypothetical protein UCRPC4_g04188 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 2694.92
//
Query:       KKY20299.1  [L=456]
Description: putative acyldehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.8e-38  129.7   6.4    1.7e-37  129.0   6.4    1.4  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
      2e-30  105.8   0.7    4.6e-30  104.6   0.1    2.0  2  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    4.5e-24   84.5   0.0      1e-23   83.3   0.0    1.6  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    6.2e-15   55.6   2.3    9.4e-15   55.1   2.3    1.3  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
     0.0012   18.5   0.0     0.0036   17.0   0.0    1.7  1  HpaB_N         4-hydroxyphenylacetate 3-hydroxylase N termina


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   6.4   4.7e-41   1.7e-37       1     148 [.     301     449 ..     301     451 .. 0.97

  Alignments for each domain:
  == domain 1  score: 129.0 bits;  conditional E-value: 4.7e-41
                    TBHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHH.TSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheRlavaaaalglarraleealeyar.rrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpdraeasmaKlfa 95 
                    g+G ++a+  ln +R+++aa++ gla  a e+a++y+  +rk+fg+ ++ +q ++++la+ ++e+ aar+lvy+aa++ + g++  ++a+maKl+a
     KKY20299.1 301 GDGYKYAIGLLNEGRIGIAAQMTGLALGAWENAAQYVWnDRKQFGQLVGTFQGMQHQLAQAYTEIVAARALVYNAARKKELGQDFVMDAAMAKLYA 396
                    69**********************************96157******************************************************* PP

                    HHHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHHHHH CS
  Acyl-CoA_dh_1  96 selaqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrniiarr 148
                    s++a +v  +a++++Gg+G+ +e+  e+++rd+++  i+eGts+iq+ +ia+ 
     KKY20299.1 397 SQVAGRVSGSAVEWMGGMGFVREGIAEKMFRDSKIGAIYEGTSNIQLTTIAKM 449
                    ***************************************************96 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6   0.1   1.3e-33   4.6e-30       2     111 ..      80     189 ..      79     191 .. 0.97
   2 ?   -2.0   0.1       1.5   5.4e+03      35      56 ..     384     405 ..     354     449 .. 0.47

  Alignments for each domain:
  == domain 1  score: 104.6 bits;  conditional E-value: 1.3e-33
                    HHHHHHHHHHHHHHHHHTHHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHHHS CS
  Acyl-CoA_dh_N   2 eeqealrdtvrefaeeelaphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslvapailrfG 97 
                    e + ++ ++v +fa+e +ap+++e+de+++++ +++++l e+Gl+g+ +peeygG+g+++++a++ +eelar+d ++++l  vh++lv+ ail++G
     KKY20299.1  80 EVETMMSESVSKFAKEVIAPKVREMDENETMDPAIVEQLFEQGLMGVEIPEEYGGSGMNFTSAIVGIEELARVDPSVSVLCDVHNTLVVTAILKWG 175
                    567899***********************9999*************************************************************** PP

                    -HHHHHHHHHHHHT CS
  Acyl-CoA_dh_N  98 teeqkrryLpklas 111
                    t+e krr+Lp la+
     KKY20299.1 176 TAEAKRRWLPALAT 189
                    ************97 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.5
                    HHHHHHHHTTCTSTTS-GGGTS CS
  Acyl-CoA_dh_N  35 elwkklaelGllgitvpeeygG 56 
                    +++  +a + l++ +v   + G
     KKY20299.1 384 DFVMDAAMAKLYASQVAGRVSG 405
                    3333333333333333333333 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.0   2.8e-27     1e-23       1      97 []     194     289 ..     194     289 .. 0.93

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 2.8e-27
                    EEE---SS-SS-GGG---EE.EEETT.EEEEEEEEEEEETTTT-SEEEEEEE.TS-------EEEEEEE..GGGEEE-----BSS-TTS-EEEEEE CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvktta.aerdggeyvlnGeKiwitnaaiatlalvlar.tekpdrarglslflvprdapgvsvrrieeklGlrglptgelvf 94 
                    +f+l+Ep +Gsd+ ++kt+a ++ dg  y +nG+K+witn+++a++++v+a    ++ +++g++ f+v++ ++g+s+ ++e+klG+r  +t+ + f
     KKY20299.1 194 SFCLSEPVSGSDAFALKTKAeKTADG--YKINGSKMWITNSMEADFFIVFANlDPSK-GYKGITAFIVEKADKGFSIAKKEKKLGIRASSTCVINF 286
                    69****************88666666..************************55555.5************************************* PP

                    E.. CS
  Acyl-CoA_dh_M  95 edv 97 
                    +dv
     KKY20299.1 287 DDV 289
                    *97 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   2.3   2.6e-18   9.4e-15       1     133 [.     316     439 ..     316     440 .. 0.96

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 2.6e-18
                    .HHHHHHHHHHHHHHHHHHHHHH.HHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   1 lgiaavalGaAraalaefvelar.ervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelai 95 
                    +giaa+++G+A +a + +++++  +r++  +g+ +  ++ +q++la+a +++ AAral+++aa++     + g+ +    + +a++a+++a++ a 
     KKY20299.1 316 IGIAAQMTGLALGAWENAAQYVWnDRKQ--FGQLVGTFQGMQHQLAQAYTEIVAARALVYNAARK----KELGQDF----VMDAAMAKLYASQVAG 401
                    589******************9869999..*********************************99....7788887....**************** PP

                    HHHHHHHHHCGGGGGBTT-HHHHHHHHHHHHCTSGGG- CS
  Acyl-CoA_dh_2  96 aavdalfeaaGgsalrkesplqRlwRDahaaaaHaaln 133
                    ++  +++e +Gg++   e   + ++RD +++a++++++
     KKY20299.1 402 RVSGSAVEWMGGMGFVREGIAEKMFRDSKIGAIYEGTS 439
                    **********************************9876 PP

>> HpaB_N  4-hydroxyphenylacetate 3-hydroxylase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     1e-06    0.0036     172     270 ..     213     296 ..     199     297 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1e-06
                 EEE-SSEEEEEEEEEEEE-.--SSEEEE---SS-..TTSGGG-EEEEEETT-TTEEEEE-------S..-TTT-TTTTT----EEEEEEEEEEEEGGGE CS
      HpaB_N 172 veetddGivVrGakvlaTgaaladeilvlptramlkeedkdyavafavpvdapGlklicresfedkleesefdyplssrfdendalvvfDdVfVPwerV 270
                  e+t+dG  ++G k+ +T+++ ad ++v+    +   +  +   af+v+   +G ++  +e+             +      +++++ fDdV +P +r 
  KKY20299.1 213 AEKTADGYKINGSKMWITNSMEADFFIVFANLDP--SKGYKGITAFIVEKADKGFSIAKKEKKLG----------IR---ASSTCVINFDDVEIPSDRL 296
                 58999**************************666..45677789***********9887776544..........22...347999***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3104.96
//
Query:       KKY20300.1  [L=536]
Description: putative protein spg20 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-55  188.5   8.7    2.3e-55  187.8   8.7    1.4  1  Senescence  Senescence-associated protein
  ------ inclusion threshold ------
      0.049   13.9   0.1       0.12   12.6   0.1    1.6  1  DUF3082     Protein of unknown function (DUF3082)


Domain annotation for each model (and alignments):
>> Senescence  Senescence-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.8   8.7   2.5e-59   2.3e-55       1     183 []     251     430 ..     251     430 .. 0.94

  Alignments for each domain:
  == domain 1  score: 187.8 bits;  conditional E-value: 2.5e-59
  Senescence   1 ivkgadvisrgivktsnllakgiqkgaeyyiskskpsekPlefsprtrkalrkvrkvsgqaakvsaktvggvgdaagrvgaavaksvkkkgtksseees 99 
                 iv++++++sr++v++s++la+++++gae++++k+kp++kP++f+ +t++++rk++++s++aa +saktvg+v+++a+++ga++a++ +k++   +++ +
  KKY20300.1 251 IVQTSATASRLVVTGSSYLARAMSSGAESFTQKTKPNPKPMTFTDTTHQRIRKINTFSQSAAGLSAKTVGQVSRYAQNFGASMARKGEKDR--MKKGFD 347
                 8999*********************************************************************************933322..235555 PP

  Senescence 100 kpgksekktaagevlnasldafstvldgleeaakqllsatsdattkvvehkYGeeAgevtrdvletagNvglvyvdvrgvgrka 183
                 k+g ++ +++++++ln+s++afst +dg++++a++ll+++s+a+t+vv+hkYG++Ag+v+ +++++a+Nvglvy+d++gv+rka
  KKY20300.1 348 KDG-RPISDYKPGILNKSMIAFSTLADGIDHGARALLTSGSAAATTVVGHKYGAQAGQVAGHIAGGAKNVGLVYIDAAGVSRKA 430
                 555.789****************************************************************************8 PP

>> DUF3082  Protein of unknown function (DUF3082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.4e-05      0.12      31      62 ..     240     271 ..     237     275 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.4e-05
     DUF3082  31 farkplssdnqlvqriavavRtlvvGlcyLat 62 
                  ar+p  +++++vq  a+a+R +v+G +yLa 
  KKY20300.1 240 MARHPAYQNSTIVQTSATASRLVVTGSSYLAR 271
                 689***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.53
# Mc/sec: 3021.36
//
Query:       KKY20301.1  [L=486]
Description: putative peptidase d [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-58  195.3   0.0    1.3e-57  194.9   0.0    1.2  1  Peptidase_M24  Metallopeptidase family M24
    8.6e-20   70.7   0.0    1.4e-19   70.0   0.0    1.3  1  AMP_N          Aminopeptidase P, N-terminal domain


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.9   0.0   1.5e-61   1.3e-57       2     209 .]     191     463 ..     190     463 .. 0.90

  Alignments for each domain:
  == domain 1  score: 194.9 bits;  conditional E-value: 1.5e-61
                    HHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTTTCEESSSSEEEEGGGGGSTTTBCSSSB--TTEEEEEEEEEEETTEEEEEEEEE. CS
  Peptidase_M24   2 lirkaariasaaleavleaikpgvterelaaeieattlkrhgarglafppivasgenaavlhytpndrvlkegdlvlidagaeydgyasDitrTv. 96 
                    l+rka++ia+ a+++vl++i+++  er+++a++e++ +  +g++ +++++i++sg+naa+lhy  n++++ +++l+l+dag+ +++yasD+trT+ 
     KKY20301.1 191 LLRKANEIACIAHTEVLKNIRHFSHERQVQAIFEDA-CTSRGVTTQSYNVIAGSGPNAAILHYMENNEPFGDRQLLLLDAGPDWNCYASDVTRTIp 285
                    58********************************99.**********************************************************8 PP

                    ECS.SGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTB.....................CCGBSSCSEEEESSSSSEEEEEESS CS
  Peptidase_M24  97 lvG.kftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesagl.....................akffphglGHgvGlevhdegpsvsr 170
                    + G  +++e++++y++v ++q + ik +kpG++++++++ ar ++ ++ l                     + f  h+ GH++Glevhd++p+  +
     KKY20301.1 286 ISGtWPSQEAKDIYDLVDKMQAEFIKGIKPGARYRDLNNLARCIMVEG-LqklgifkshhptqtvidsgatQIFSYHSYGHHIGLEVHDVSPRPIT 380
                    788888889*************************************94.444455899999999999999888999**************887555 PP

                    ..................STT..CSSB--TTBEEEEEEEEEEET...TT.....................EEEEEBEEEEEES CS
  Peptidase_M24 171 ..................esn..dgrkleeGmvftiEpgiyfap...ge.....................ggvriedtvlvte 209
                                      +++  d + lee+mv+t+Epgiyf +   +e                     ggvried++lvt+
     KKY20301.1 381 glsksdqamacrqfravpAPHlmDAVLLEENMVVTVEPGIYFSEivlEElvddslkdfidlevarrylpvGGVRIEDDILVTK 463
                    577888999999999888444558999**************877555226777788888999999999999**********96 PP

>> AMP_N  Aminopeptidase P, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.0   1.6e-23   1.4e-19       3     118 ..      30     143 ..      28     149 .. 0.93

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 1.6e-23
                 HHHHHHHHHS.-SSEEEEEE-----EEET.TEE------HHHHHHH----SS-EEEEEESSEEEE...EEEE----HHHHHHH----HHHHHHHHHT-S CS
       AMP_N   3 erRkrlleal.pensvvilaagkekyrsg.dveypFrqnsdFlYltGfnepdavlvlekeedkkehkstLfvprkdpekelWdGarlgleeakelfgvd 99 
                 +++++++++l  e+++++l++++++  ++ d++ pFrq ++F+YltG++ pda++++    d+ ++ +tL++   +p +++W G+ l++e+a++ ++vd
  KKY20301.1  30 QHVQNVAAKLgVEEGLIYLPGQQTRSLEDsDQDVPFRQLRYFYYLTGVDVPDAFVTY----DIAKDLLTLYISIIPPLQAIWFGKGLNIEQAESSYDVD 124
                 67889999996479*******************************************....89999********************************* PP

                 EEEEGGGHHHHHHHHHTT- CS
       AMP_N 100 eaepidelesalakllkgs 118
                  +++ + l+s l+k + ++
  KKY20301.1 125 VVKSAETLKSDLTKWIGNH 143
                 ************9998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 3022.25
//
Query:       KKY20302.1  [L=319]
Description: hypothetical protein UCRPC4_g04192 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.038   13.4   0.2       0.14   11.6   0.0    1.8  2  Beta_protein  Beta protein


Domain annotation for each model (and alignments):
>> Beta_protein  Beta protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0     0.059   1.1e+03     312     330 ..     103     121 ..      90     125 .. 0.86
   2 ?   11.6   0.0   7.7e-06      0.14     274     314 ..     245     284 ..     213     297 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.059
  Beta_protein 312 eecakgkegtgspskwiav 330
                   + ca+++++tg+ps w +v
    KKY20302.1 103 ALCAAEQSSTGQPSAWAKV 121
                   5699999*********987 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 7.7e-06
  Beta_protein 274 rrvrkgrgaaqykdlaqelvkssdefrgsefswGdeyIeec 314
                    +vr +++++q+++++q  ++ +d f+ + + +Gd +I e 
    KKY20302.1 245 SKVRTEKRKEQFQKCCQIALD-DDLFLDQVYLAGDAKIFER 284
                   345899***************.77**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.35s 00:00:00.97 Elapsed: 00:00:00.55
# Mc/sec: 1761.89
//
Query:       KKY20303.1  [L=427]
Description: putative ankyrin repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-07   32.2   0.7    3.6e-05   24.2   0.0    3.5  3  Ank_4     Ankyrin repeats (many copies)
    1.4e-07   32.0   0.0    2.8e-07   31.0   0.0    1.5  1  Ank_2     Ankyrin repeats (3 copies)
     0.0075   16.7   0.0      0.075   13.6   0.0    2.7  3  Ank_3     Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00068       4.1       8      55 .]      95     145 ..      89     145 .. 0.88
   2 !   24.2   0.0     6e-09   3.6e-05       8      54 ..     131     177 ..     126     178 .. 0.84
   3 !    9.6   0.1   0.00023       1.4       8      42 ..     165     198 ..     165     204 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00068
       Ank_4   8 aaisgrlelvrlLl.ekgad.inaqdnrsGetalhiAakrgn.veilklLl 55 
                 a+   +l+ +r+L+ e+ +d  + q +++G++ + +Aa  +n +  +++L+
  KKY20303.1  95 ACVRKDLRELRWLFqEYSKDnFHLQVSDDGDNGVLYAATEENgLATVQWLH 145
                 677889999*****767888888888999*********99999******97 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 6e-09
       Ank_4   8 aai.sgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 aa  ++ l +v++L++++a+i+ + n +G+t+l  Aa++g+ + + +L
  KKY20303.1 131 AATeENGLATVQWLHQQDASIDQC-NHYGRTPLMEAALWGRHKSVLYL 177
                 3444778899*************9.***************87777776 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00023
       Ank_4   8 aaisgrlelvrlLlekgadinaqdnrsGetalhiA 42 
                 aa  gr+++v +L  +gad+ ++ +++ ++al+ A
  KKY20303.1 165 AALWGRHKSVLYLTGQGADWRRR-DGNNMNALDLA 198
                 6779*******************.********988 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   4.7e-11   2.8e-07      13      83 .]     104     188 ..      93     188 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 4.7e-11
       Ank_2  13 vklLl...egadpn.k....ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 +++L    ++ +++ +     ++ +L++A++++ l +v++L ++       + +grtpL+ Aa +g+ + v +L  +gad  ++d
  KKY20303.1 104 LRWLFqeySKDNFHlQvsddGDNGVLYAATEENGLATVQWLHQQdasidqCNHYGRTPLMEAALWGRHKSVLYLTGQGADWRRRD 188
                 5666644222233352334333458888888887899*****977786666699************99*******8899987776 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         3   1.8e+04      11      25 ..      98     111 ..      95     114 .. 0.66
   2 ?   -2.9   0.0         3   1.8e+04      13      29 ..     137     151 ..     129     152 .. 0.63
   3 !   13.6   0.0   1.3e-05     0.075       1      28 [.     157     183 ..     157     185 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3
       Ank_3  11 rsgnleivkfLlenk 25 
                 r +  e +++L++++
  KKY20303.1  98 RKDLRE-LRWLFQEY 111
                 455557.99999865 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3
       Ank_3  13 gnleivkfLlenkgadv 29 
                 g  + v++L +   a +
  KKY20303.1 137 GLAT-VQWLHQ-QDASI 151
                 3334.999988.67665 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 1.3e-05
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgad 28 
                 +G+tpL++Aa+ g+++ v +L    gad
  KKY20303.1 157 YGRTPLMEAALWGRHKSVLYLTG-QGAD 183
                 79*************88999988.7887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2670.41
//
Query:       KKY20304.1  [L=385]
Description: putative family taurine catabolism dioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-49  166.6   0.0    1.2e-48  166.3   0.0    1.1  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.3   0.0   6.5e-53   1.2e-48       8     267 ..      22     373 ..      13     374 .. 0.90

  Alignments for each domain:
  == domain 1  score: 166.3 bits;  conditional E-value: 6.5e-53
        TauD   8 k....fgae..gvdlsdleslddelkeelrellaeygvvvfrgf.plspeqqlefarrfG................plygtpgrgtntkygevld.... 79 
                      fga   ++d+++   l+d+++e l++ l++y v++++g+ +++p++q  +++rf+                +++  +++ t++  ++v+     
  KKY20304.1  22 GssidFGATveEIDIEN---LSDADFEKLNDSLYNYNVLILKGQgHTTPKAQYLLTQRFDpaagsgyghnadfrdkKSILANDGSTIPAVPQVQLigng 117
                 25566888888999999...78888******************9555************888889999********99999999999999999999999 PP

        TauD  80 vssvyesadianlayttll....................wHtDls.ylesppgiqlLhcleapatG......................GetpfvDgraa 135
                 +  +ye+ ++  l++++++                    wH D++ y+  pp+++ + +++ p+ G                      G t+fv+++++
  KKY20304.1 118 RFGSYEGLENFKLTHPHHQtfhrtvvpkeedpvytrfyrWHIDAAlYNKLPPRVTTFIAVRLPKDGasrrqtirwddgtgdevkgivpGSTAFVSSYKT 216
                 66678999999999999999999999999**************999******************666666666666666699999************** PP

        TauD 136 ynaLpeelpellegltavrvyyhyrg................gglrteqelpavdkhprtghpvvrthpvltgrkallvnppfatri...eglgtpesk 215
                 y+ L+e+++e+ +g ++++++++y++                g + ++ +lp+++k+++ + p+++++pv tg+ al+++p+  ++i   +g   ++ +
  KKY20304.1 217 YDLLSEDQKEFARGAKIEYAPHPYVWmasakarenglgmhneGLEAPDDQLPPIEKDKILITPMCWRNPV-TGKLALQIHPASVKKIhkpNGEILDDLA 314
                 *********************************************************************8.*********988888887889999**** PP

        TauD 216 elldaleelled...peftyrfqwqeGdlvifdNrrvlHgrtaf....degeeRhllrc 267
                 e+ + l+e++++   pe++y ++w+eGd+v+++N+++lH+ t      +e ++R +++c
  KKY20304.1 315 EVRKILYEYQRPgigPEYVYLHEWKEGDMVVWNNHGMLHAVTGTldpdKEQDKRLFRQC 373
                 **************9***************************76654333356777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2486.07
//
Query:       KKY20305.1  [L=458]
Description: putative glycosyl hydrolase family 71 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.2e-125  419.3  10.5   1.4e-125  419.1  10.5    1.0  1  Glyco_hydro_71  Glycosyl hydrolase family 71


Domain annotation for each model (and alignments):
>> Glyco_hydro_71  Glycosyl hydrolase family 71
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  419.1  10.5  7.7e-130  1.4e-125       1     374 [.      35     430 ..      35     431 .. 0.94

  Alignments for each domain:
  == domain 1  score: 419.1 bits;  conditional E-value: 7.7e-130
  Glyco_hydro_71   1 VfaHfmvgntenytasdwekDiklAkaagiDgFaLNigskdswtaeqladayeaAeavg...fkLflSfDmavagawpksevislikkyashpaq 92 
                     V aH++vgn+++yt +dw++D+++A++agiD+FaLNi++ d++ta++la+a++aA+++    ++L+l fD+++ gaw++++v+++i++y++h+a+
      KKY20305.1  35 VTAHYLVGNAAEYTMEDWQDDMAKAQQAGIDAFALNIAYGDTNTATSLATAFSAAASMRsrtIRLYLNFDYEAWGAWDATSVVNTINQYQNHSAY 129
                     78*******************************************************97799**********66********************* PP

  Glyco_hydro_71  93 lkvngkplvSTFeGeknaedwasiksalteeiffvPdfsslgaaaaaekaldvvDGlfsWeaWpkgatnmstetDeaylsalkgkpYmmpvSpwf 187
                     +k+n++plvSTFeG++n +dw+sik+a t ++ff+Pd+ss+g++aa ++ ++++DGl sW+aWp g+tn +t+ De+y+s+l+gkpYmmpvSpwf
      KKY20305.1 130 FKYNNQPLVSTFEGTSNINDWTSIKAA-T-NCFFMPDWSSIGPSAATTY-SNIIDGLASWSAWPDGPTNLTTAIDEEYISTLSGKPYMMPVSPWF 221
                     ***************************.5.9************999995.9*******************************9************ PP

  Glyco_hydro_71 188 fthlgkesynknwvwrgddlwakRweqvlelqp..dfveiitWNDygEShYigplkekkaqdgsskyveg.mpHdgwrdllkyyiaayKtgsk.. 277
                     +t+l  + y+knw+w + +lw+ Rw + l+l+   +f++i++WNDygEShYigp++++   +g++ yv+  ++H++w+dll+yyi ayK +    
      KKY20305.1 222 YTNL--PAYSKNWLWHSSSLWHYRWLESLSLSVssTFIQILSWNDYGESHYIGPIRSSGIVSGAELYVDSnHSHTAWLDLLPYYIYAYKLNCGfs 314
                     ****..89*******************99775444*********************************86589****************997799 PP

  Glyco_hydro_71 278 ...........kpaitedklvlwyRphpkkakcssgdttgnpana.......elleDkvfvvallkspatvtvsvggkesetfsvk.aGvnklsv 353
                                    ++++l++wy+++p++  +s  +ttgn+ ++       +l+ D++f+++ll+spatv+v++g++ s+t++v+ +G+n++sv
      KKY20305.1 315 ssssspfltsgPILDSKERLTYWYKTTPNDS-GSWANTTGNNPSYqtvydpaTLSPDQIFFTVLLSSPATVSVTIGNHPSQTVDVDtKGINHFSV 408
                     99999999975444578899***********.7788999999999899999999**************************99998879******* PP

  Glyco_hydro_71 354 pf.ngetGkvkvsvvrngktva 374
                     p+ +ge+G v ++vvrngk v+
      KKY20305.1 409 PIpSGEAGVVGFEVVRNGKVVL 430
                     **7788899*********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.50
# Mc/sec: 2767.89
//
Query:       KKY20306.1  [L=177]
Description: hypothetical protein UCRPC4_g04196 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1276.61
//
Query:       KKY20307.1  [L=431]
Description: putative phosphoric diester hydrolase-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.9    8.3   6.7         20    5.6   1.3    2.7  3  DUF1180   Protein of unknown function (DUF1180)


Domain annotation for each model (and alignments):
>> DUF1180  Protein of unknown function (DUF1180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0018        33       2      70 ..       4      72 ..       2     103 .. 0.71
   2 ?    5.6   1.3    0.0011        20      25      97 ..     175     257 ..     141     263 .. 0.39
   3 ?   -2.7   0.1      0.37   6.7e+03      60      74 ..     390     404 ..     370     421 .. 0.46

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0018
     DUF1180  2 srlLalvlLLlllLaasaadasralspaasspeaepPlppgataaespgkataieaksaqaaeggngss 70
                ++lL +vlLL+ + a+++++  ++++ ++s +  ++P    +  +      t++ +++ ++a++  +s+
  KKY20307.1  4 WNLLLSVLLLPFVYANPVQRRNTTTACNNSPDLCDKPYGTITHLGAHDSPFTTTRSENDTSANQYYNST 72
                678889999998888899999999999999999999996633333333333444566666667666666 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0011
     DUF1180  25 alspaasspeae.pPlppgataaes...pg.kataieaksaqaaeggngsspragsaad.....aggslavvpelssntdkpm 97 
                 a +p++s+++++ +    ++t+a+s   p   +t+++++s+ ++ + + ssp a s         +++  +v+ ++s ++  +
  KKY20307.1 175 AYTPSDSTTSSStSTATTTTTSAGSpsfPFaTTTTTSSSSTSSSTSTSTSSPIAPSDWPtlsdlISAGTRLVTFIASLDETSD 257
                 33444444433312222244555552221101222223333333333333333332221444444444444444555555555 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.37
     DUF1180  60 aqaaeggngssprag 74 
                 + ++  ++ ss+  g
  KKY20307.1 390 QLSSSDSSSSSTSDG 404
                 222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 2831.43
//
Query:       KKY20308.1  [L=508]
Description: putative amino acid permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.9e-125  417.6  48.5   7.3e-125  417.3  48.5    1.0  1  AA_permease    Amino acid permease
    1.7e-32  112.8  51.6    2.1e-32  112.5  51.6    1.1  1  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
        2.1    8.4   4.6        4.2    7.5   4.6    1.4  1  DUF4632        Domain of unknown function (DUF4632)


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  417.3  48.5  1.2e-128  7.3e-125       4     473 ..       1     450 [.       1     453 [. 0.97

  Alignments for each domain:
  == domain 1  score: 417.3 bits;  conditional E-value: 1.2e-128
  AA_permease   4 vialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasili 101
                  +ia+gg+iG gl+vg+g++l+ aGp+g+l+++ l+g+++f+vm+slge+at++p++g+f+ ya+rf++++l+f+ G+ y+++w+t la+e++a++ +i
   KKY20308.1   1 MIAIGGIIGPGLLVGSGNALHLAGPGGILISFSLVGIIVFFVMQSLGELATLIPVTGSFTEYAERFVDESLAFALGWAYWYLWVTILANEYNAIAVVI 98 
                  8************************************************************************************************* PP

  AA_permease 102 qfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeegafk 199
                  ++w  ++ +p +w+++++f+v++l i+++gv ++ge+ef+l+likii+i  f+i+ i++++gg +  + gf++++d+g+     + ++        + 
   KKY20308.1  99 TYW--TQTVP-QWAWILIFWVLFLSISMLGVLAFGEIEFWLSLIKIISITLFFIIAIVISSGGIGPGAIGFKYWHDPGA-----FADS--------IN 180
                  ***..*****.*********************************************9999999988888**********.....9999........** PP

  AA_permease 200 nfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlglln.dsasaaspfvifikesgvsvlaplinavi 296
                  +++  fvi+   ++G+e+v+i+agE+k+P+ks+P ai+qv++ri++fY++++++ig+l+p++d+ ll+ ds +aasp+ i ++ +++  +a++ina+i
   KKY20308.1 181 GVARTFVIAGTLYAGTEMVGITAGESKNPRKSVPLAIRQVFFRIAFFYIGMMFFIGILIPYDDPRLLSaDSKTAASPLTISLSDANIQPAAHVINALI 278
                  *****************************************************************998245555************************ PP

  AA_permease 297 ltaalssansslysasRvlyslakd..glaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfRk 392
                   ++++s++nssly+asR+l ++a+     aP++l++ + +gvP+ a+++s i+++++++  + + a  +v++ l+++s+++++ivw +i + ++rfR+
   KKY20308.1 279 VISVISAGNSSLYVASRTLVFMARTpnPKAPRFLGRTNSHGVPWTALIFSNIFACISFVSVGPAGA-GKVYDALITLSGVATFIVWAIIGIVHVRFRR 375
                  ************************6225799***************************88876655.7****************************** PP

  AA_permease 393 alkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknk 473
                  a+k+qg  +eel+++a  +p+g++  +aa+i+++ +++++a+l        +++++f+  y+ +++fl++ +g+k+++k++
   KKY20308.1 376 AMKLQGQIVEELPYQAMWYPWGTYASIAANIFLIFFQGYTAFLS------PFSSSDFVINYILLPVFLLFVIGYKFYYKTR 450
                  ********************************************......89**************************985 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.5  51.6   3.5e-36   2.1e-32       9     417 ..       2     430 ..       1     441 [. 0.80

  Alignments for each domain:
  == domain 1  score: 112.5 bits;  conditional E-value: 3.5e-36
  AA_permease_2   9 lvigsvigsgifvkn....laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaa 100
                    ++ig +ig g +v +     +a +g +li   ++++++++  v+  + El++++p  g    y++++  + +af  +w++w+ +v  l +  ++a+
     KKY20308.1   2 IAIGGIIGPGLLVGSgnalHLAGPGGILISFSLVGIIVFF--VMQSLGELATLIPVTGSFTEYAERFVDESLAFALGWAYWYLWVTIL-ANEYNAI 94 
                    7888998888888777655455577777777777777776..555578**************************************88.9999999 PP

  AA_permease_2 101 syllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl..stetdt..ffpngwpgvll 192
                    +  ++ + +++ +  w+++li++++++    i+ +g+   + i ++l ++ki + +++++i+++++ +gg+ + +     ++    f++  +gv++
     KKY20308.1  95 AVVITYWTQTVPQ--WAWILIFWVLFL---SISMLGVLAFGEIEFWLSLIKI-ISITLFFIIAIVISSGGIGPGAigFKYWHDpgAFADSINGVAR 184
                    9999999877644..666665555544...4667799999************.6888888899999999999988885555555588889999*** PP

  AA_permease_2 193 gllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddei....anlsnlgsvaalffeavggkvvaiivvilial 282
                    ++ i+   ++G e++   + e k+  k vp+ai  ++  ++++y+++++++ + +p d      a +++  s++++ +  ++ + +a+++++li++
     KKY20308.1 185 TFVIAGTLYAGTEMVGITAGESKNprKSVPLAIRQVFFRIAFFYIGMMFFIGILIPYDDPrllsADSKTAASPLTISLSDANIQPAAHVINALIVI 280
                    *********************8888578*****************************998677644555667799999999999************ PP

  AA_permease_2 283 sllgaintavigssrvlealard..gvlPrffakvnkfgspiraiiltaivslillllfllas.saaynfllsvsslgliisyllliigalilrkk 375
                    s++ a+n+ ++ +sr+l  +ar      Prf+ ++n +g p+ a+i+++i+++i ++ +  a  ++ y++l ++s ++ +i+++++ i  +  r+ 
     KKY20308.1 281 SVISAGNSSLYVASRTLVFMARTpnPKAPRFLGRTNSHGVPWTALIFSNIFACISFVSVGPAGaGKVYDALITLSGVATFIVWAIIGIVHVRFRRA 376
                    **********************9444567*************************99888877689******************9999888888888 PP

  AA_permease_2 376 rphlkr.............pgk...ilvaiigalfllfllvalffppkgpatqssliy 417
                    ++ +++             +g    i  +i+ ++f  ++ ++       ++  + ++y
     KKY20308.1 377 MKLQGQiveelpyqamwypWGTyasIAANIFLIFFQGYTAFLS----PFSSSDFVINY 430
                    8876666677887887443222222344444444444444443....33344444444 PP

>> DUF4632  Domain of unknown function (DUF4632)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.6   0.00069       4.2      10      42 ..     471     502 ..     461     505 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00069
     DUF4632  10 dadgeadeeeesekgagPrsaGWral.rrlwdrv 42 
                   d ++d+e+e    a+P   GW++  rr+w+r+
  KKY20308.1 471 GGDDDDDDEREQRDTAEP--GGWKSRrRRVWERI 502
                 334555666666666666..7**9862579**97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       961  (0.0536003); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.35s 00:00:01.06 Elapsed: 00:00:00.55
# Mc/sec: 2784.37
//
Query:       KKY20309.1  [L=348]
Description: putative alcohol zinc-containing [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-26   92.6   0.1    3.9e-26   91.6   0.1    1.5  1  ADH_zinc_N    Zinc-binding dehydrogenase
    6.4e-09   37.0   0.0    1.1e-08   36.2   0.0    1.4  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
      2e-06   27.7   0.0    4.6e-06   26.5   0.0    1.7  1  ADH_N         Alcohol dehydrogenase GroES-like domain
    0.00084   18.7   0.1     0.0014   18.0   0.1    1.2  1  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.017   15.2   0.1      0.068   13.3   0.0    2.0  2  HupF_HypC     HupF/HypC family
      0.048   13.7   0.2        7.6    6.7   0.0    3.0  3  Cpn10         Chaperonin 10 Kd subunit


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6   0.1   1.3e-29   3.9e-26       1     120 [.     157     281 ..     157     291 .. 0.93

  Alignments for each domain:
  == domain 1  score: 91.6 bits;  conditional E-value: 1.3e-29
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHT.......TTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC. CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykea.dlverikelt.......ggegvdvvfecvGsgatleaalkllkpgGrlvvvGg. 90 
                 gvGl avq+AkalGa+via++s+++k++++ ++Gad+vi+y +  ++ +++ e++       g+ gvdvv++ vG   ++  +lk+++ + rl v+G+ 
  KKY20309.1 157 GVGLSAVQFAKALGATVIATASTDRKRQICLDFGADYVIDY-RSpKWPDQVIEICkthrtgnGKAGVDVVYDPVG---MIGPSLKCVAWNARLLVIGFa 251
                 9****************************************.777****************9899**********...********************7 PP

                 TSSEEEEEHHHHHHTT-EEEEE-SSCHHHH CS
  ADH_zinc_N  91 gkgeeefdlrnlllkeksilGsllgslree 120
                  ++ e++ l+++llk++s++G +lg + ++
  KKY20309.1 252 AGKIEKLALNRVLLKNVSVIGLHLGEYAKK 281
                 666677*******************96554 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   3.7e-12   1.1e-08       2     132 ..     190     335 ..     189     336 .. 0.74

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 3.7e-12
                   T-SEEEETTSTTHH...........HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTT.T-EEEE--GGG...-.. CS
  ADH_zinc_N_2   2 GAdevidyrtedfe...........aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrk.grsvkyeflfsmkas.. 84 
                   GAd vidyr++ +            +  g++gvDvv+d vg   ++  slk+++ ++rl++ig    + ++ k+a++r   ++v++  l  + ++  
    KKY20309.1 190 GADYVIDYRSPKWPdqvieickthrTGNGKAGVDVVYDPVG---MIGPSLKCVAWNARLLVIGFA--AGKIEKLALNRVlLKNVSVIGLH-LGEYak 280
                   9********99999999****9976444459**********...446677777778***99*953..55555665544302333333343.444476 PP

                   .....-HHHH...HHHHHHHHHHH----E..EEE.EEGGGHHHHHHHHHSS--SSEEE CS
  ADH_zinc_N_2  85 ....aqadil...eelaalieeGklrpvv..drv.fpleeaaeAhrylesgrarGKiV 132
                                +++++li+++k+r  v  dr   +l+ +++A+++l ++ + GK+V
    KKY20309.1 281 kepqTT---VvvwKAIFDLIQQKKFRSIVfgDRKfVGLDSVKDALKALGERGTWGKVV 335
                   643333...2455*************66633588889********************9 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.5e-09   4.6e-06       3      62 ..      30      95 ..      28     113 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.5e-09
                EEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS......--TT-EEEE- CS
       ADH_N  3 evlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkk......lkvGdrVvve 62
                  lik++aag +  Dl  + g+ + + +lp i G E++G+v++v  + +k      +kvGdrV+  
  KKY20309.1 30 HYLIKISAAGTNFFDLLQIAGKYQHQPPLPWISGSEFAGTVVAVPTSPSKsgkpwrFKVGDRVFGA 95
                569******************99999*****************9887777789999*******865 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   4.5e-07    0.0014      18      74 ..     135     193 ..     122     211 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.5e-07
                  ETTCEETCB---EEEEE..STSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCE CS
  AlaDh_PNT_C  18 tlaGgvpgvepakvlvi..GgGvaGlqAiatakglgakVtvlDvrparleqleslgakf 74 
                  t++ +   ++p++ + +  G+G +Gl+A++ ak+lga+V ++    ++++   ++ga +
   KKY20309.1 135 TALVTRAQTQPGEWVLVhaGAGGVGLSAVQFAKALGATVIATASTDRKRQICLDFGADY 193
                  4444444477887665445********************99977666666666677764 PP

>> HupF_HypC  HupF/HypC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.3e-05     0.068      30      48 ..     135     155 ..     127     171 .. 0.83
   2 ?   -2.2   0.0       1.7     5e+03      44      56 ..     246     258 ..     245     264 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.3e-05
                 GTTC..TTB-TT-EEEEETTE CS
   HupF_HypC  30 lalv..eevkvGdyVLvhvGf 48 
                 +alv   + ++G++VLvh+G 
  KKY20309.1 135 TALVtrAQTQPGEWVLVHAGA 155
                 567766689**********96 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.7
                 EETTEEEEEE-HH CS
   HupF_HypC  44 vhvGfAiekidee 56 
                 + +GfA  ki++ 
  KKY20309.1 246 LVIGFAAGKIEKL 258
                 5689**9999875 PP

>> Cpn10  Chaperonin 10 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0026       7.6      36      66 ..      67      94 ..      63     108 .. 0.83
   2 ?    0.2   0.0      0.26   7.9e+02      21      46 ..     155     180 ..     149     195 .. 0.80
   3 ?    2.5   0.0      0.05   1.5e+02      17      40 ..     266     289 ..     256     292 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0026
                EEEEEEE-T........TS-TTS--T-EEEE CS
       Cpn10 36 qGvVvaVGegarnekgedvplevkvgdkVlf 66
                 G+VvaV + + +++g+  p  +kvgd+V+ 
  KKY20309.1 67 AGTVVAVPT-SPSKSGK--PWRFKVGDRVFG 94
                59*****99.7888899..*********974 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.26
                 -TT----HHHHHSEEEEEEEEE-T.. CS
       Cpn10  21 eggiilpdsakekpeqGvVvaVGega 46 
                 +gg+ l + + +k   ++V+a ++  
  KKY20309.1 155 AGGVGLSAVQFAKALGATVIATASTD 180
                 789999999999*********99833 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.05
                 -TTS-TT----HHHHHSEEEEEEE CS
       Cpn10  17 eekteggiilpdsakekpeqGvVv 40 
                 ++++  g+ l++ ak++p++ vVv
  KKY20309.1 266 KNVSVIGLHLGEYAKKEPQTTVVV 289
                 457899**************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.55
# Mc/sec: 1897.89
//
Query:       KKY20310.1  [L=309]
Description: putative conserved glycine-rich protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.34s 00:00:00.93 Elapsed: 00:00:00.53
# Mc/sec: 1739.02
//
Query:       KKY20311.1  [L=523]
Description: putative mrna processing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-30  104.2   8.8    5.4e-30  103.3   8.8    1.5  1  zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
     0.0011   19.0   0.7     0.0025   17.9   0.7    1.6  1  zf-MYND   MYND finger


Domain annotation for each model (and alignments):
>> zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   8.8     6e-34   5.4e-30       1      57 []     151     226 ..     151     226 .. 0.99

  Alignments for each domain:
  == domain 1  score: 103.3 bits;  conditional E-value: 6e-34
    zf-Mss51   1 lCPvpkhkqt...................apkhvdfeCpdCGiptycseehwedDyeahleicdtLrqvnedeHDL 57 
                 +CP+p+h++t                   +p+hv+feCpdCGip+ycseehw+dDye+hleicdtLrq+ned+HDL
  KKY20311.1 151 YCPHPHHQKTrvpaspsdaearktdasnlPPAHVHFECPDCGIPVYCSEEHWADDYENHLEICDTLRQINEDDHDL 226
                 7**************************************************************************9 PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.7   2.8e-07    0.0025       9      38 .]     184     213 ..     169     213 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.8e-07
                 -SCE-TTTS-SEESSHHHHHHCHHHHCCCH CS
     zf-MYND   9 alkkCagCksvfYCskeCqradwksHkteC 38 
                 ++  C+ C    YCs+e+   d+++H + C
  KKY20311.1 184 VHFECPDCGIPVYCSEEHWADDYENHLEIC 213
                 4559**********************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3631.68
//
Query:       KKY20312.1  [L=490]
Description: hypothetical protein UCRPC4_g04202 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 3155.59
//
Query:       KKY20313.1  [L=739]
Description: putative fungal specific transcription [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-13   49.3   0.1    9.6e-13   47.8   0.1    1.8  2  Fungal_trans  Fungal specific transcription factor domain
    1.4e-07   31.5  12.5    2.2e-07   30.9  12.5    1.3  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.1   1.1e-16   9.6e-13      87     189 ..     325     423 ..     305     474 .. 0.89
   2 ?   -2.7   0.0      0.26   2.3e+03       3      37 ..     608     642 ..     607     645 .. 0.71

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 1.1e-16
  Fungal_trans  87 pssslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinl 183
                   +s +l +++   l++++ +  ++ ++ +r++gva r++ +lgLhr+ +  +    +  + ee+++  +++wa+ ++D++++l +G p++++d++i+ 
    KKY20313.1 325 QSADLKSIKLIALASMWYFHQDNETMSWRLIGVAGRMCMELGLHRKDAIDKA---F-PTSEEKKWALNVFWAVHSFDRRWSLGTGLPFTIPDDDIDP 417
                   6889***********************************************4...4.555559*************************99******* PP

  Fungal_trans 184 pLPcdd 189
                   +LP  +
    KKY20313.1 418 QLPRPE 423
                   **9765 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.26
  Fungal_trans   3 rffsnfhpqfpilhk.psflpktssenssksayasp 37 
                   r ++ + ++ +++hk ++f ++  ++++s++a+a +
    KKY20313.1 608 RLWKTIRELRNLFHKlDTFKSHE-GDPHSNAAIAMA 642
                   789999999999***77777777.666666655544 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9  12.5   2.4e-11   2.2e-07       2      33 ..      51      80 ..      50      85 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2.4e-11
                S-HHHHHCT---STSSSS-HHHHHCTHHHCCC CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfy 33
                aC++C+++K+KC++++P C +C  l+leC+ y
  KKY20313.1 51 ACNECKRRKIKCNGQTP-CHRCGNLSLECV-Y 80
                9****************.************.5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.47
# Mc/sec: 4690.87
//
Query:       KKY20314.1  [L=390]
Description: putative casein kinase ii subunit beta-1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-72  240.7   0.0    1.3e-71  240.2   0.0    1.2  1  CK_II_beta  Casein kinase II regulatory subunit


Domain annotation for each model (and alignments):
>> CK_II_beta  Casein kinase II regulatory subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.2   0.0     7e-76   1.3e-71      11     182 .]       2     287 ..       1     287 [. 0.88

  Alignments for each domain:
  == domain 1  score: 240.2 bits;  conditional E-value: 7e-76
  CK_II_beta  11 gneyfvevdedfiedkfnltgLseevpnykealelildv...................................eeeeeleeseksevessaelLYgli 74 
                 g+eyf+e++edfied+fnltgL+++vp+yk+ale+ildv                                   ++++ + +s+++ +essaelLYgli
  KKY20314.1   2 GHEYFAEISEDFIEDDFNLTGLQSQVPMYKDALEMILDVepsetgssalseeeeeeddddgilgddskplydrdSRRHGRLSSDTAVIESSAELLYGLI 100
                 89*********************************************************************99888889999***************** PP

  CK_II_beta  75 HaryiltkkglakmlekykkkefgrCprvlCekqkvLPvGlsdkpgektvklyCpkCedvYspkssrsrsidGafFGttfphlllltypele....... 166
                 Haryi+++ g+++mleky++++fg Cprv+C+++kvLPvG++d+pg++tvkl+Cp+C d+Y+p++sr +s+dGafFGttfp+l+++t+pele       
  KKY20314.1 101 HARYITSRPGIQQMLEKYEHAHFGYCPRVHCNGCKVLPVGRTDTPGQETVKLFCPSCLDIYTPPNSRFQSVDGAFFGTTFPSLFFMTFPELEfstvqpt 199
                 *****************************************************************9999**********************97666666 PP

  CK_II_beta 167 .............pkksk..............................................................ekyepriyGfk 182
                                                                                                 ++ye riyGf+
  KKY20314.1 200 patsrsqlppisaA---DntmspsmtsstldsyksgstaqangtvlggqseliahptippqptnmngflvqnfspglgngHIYEARIYGFR 287
                 66555555555550...055555555566666666666666667777777777777777777777788888888888888**********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2550.95
//
Query:       KKY20374.1  [L=345]
Description: putative sh3 domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-11   43.0   0.0    4.9e-11   42.1   0.0    1.5  1  SH3_1     SH3 domain
    5.4e-09   35.8   0.0    1.1e-08   34.8   0.0    1.6  1  SH3_9     Variant SH3 domain
    4.9e-07   29.3   0.0    9.6e-07   28.4   0.0    1.5  1  SH3_2     Variant SH3 domain


Domain annotation for each model (and alignments):
>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   8.2e-15   4.9e-11       1      47 [.     141     187 ..     141     188 .. 0.98

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 8.2e-15
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEE CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliP 47 
                 +Al+D++ e+++EL++k+G vi v+ ++  gW+ +++  tg+ Gl+P
  KKY20374.1 141 VALFDFASEHENELPLKEGQVILVSYRHGQGWLVAEDPKTGESGLVP 187
                 7********************************************** PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   1.9e-12   1.1e-08       1      48 [.     142     191 ..     142     192 .. 0.95

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.9e-12
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegsl..tGrtGlvPanyv 48 
                 Al++++  ++ eL+L +G+vi+v+ ++  gWl ++   tG++GlvP+ +v
  KKY20374.1 142 ALFDFASEHENELPLKEGQVILVSYRHGQGWLVAEDpkTGESGLVPEEFV 191
                 89**********************999********666*********998 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.6e-10   9.6e-07       2      55 ..     140     192 ..     139     194 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.6e-10
                 EEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE...CCCEEEEEGCGEE CS
       SH3_2   2 vraiedyvgedkseLsfkkGdvikvlslgskdsdgwwegev...gGrvGlfPsslve 55 
                 ++a++d+ +e ++eL +k+G+vi v      + + +w+++     G  Gl+P ++v+
  KKY20374.1 140 AVALFDFASEHENELPLKEGQVILVS----YRHGQGWLVAEdpkTGESGLVPEEFVR 192
                 79***********************7....777788999886777**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2712.05
//
Query:       KKY20375.1  [L=294]
Description: putative transcription rna-processing factor ssu72 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-80  266.6   0.0    1.1e-79  266.4   0.0    1.0  1  Ssu72     Ssu72-like protein


Domain annotation for each model (and alignments):
>> Ssu72  Ssu72-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.4   0.0   6.4e-84   1.1e-79       1     190 [.      60     293 ..      60     294 .] 0.98

  Alignments for each domain:
  == domain 1  score: 266.4 bits;  conditional E-value: 6.4e-84
                 SEEEEEESSSSSHHHHHHHHHHHT..T-EEEEEE-SSSEEEEESSTTSEEEE-T.TS-HHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-SS--BGGG. CS
       Ssu72   1 lkfavvcasnqnrsmeahkvLkka..gfkvkSfGtgsavrLPgpsidkpnvyeF.gtsyeeiyedLkskdkelyeanGllkmldrnrkiKkaPerwqe. 95 
                 lkf++vcasn+nrsmeah +L++a  +++v+SfGtgs vrLPgpsi++pnv++F +tsy+++ye+L ++d++ly++nG+l+mldrnr++K+ Per+q+ 
  KKY20375.1  60 LKFCTVCASNNNRSMEAHLRLSSApnSYPVISFGTGSLVRLPGPSISQPNVFNFnTTSYNQMYEELYTQDARLYKNNGILTMLDRNRNLKWGPERFQDw 158
                 69********************98779***************************999****************************************** PP

                 ...................---.--SEEEESSHHHHHHHHHHHHHS--SS-EEEEEEEE---SSHHHHHHHHHHHHHHHHHHHT-SS............ CS
       Ssu72  96 ...................aeekkfdvvitceervfdavvedllsreselnrpvhvinvdikDnheeAlvgakaileLakaleeaede........... 164
                                    +e +++dv++tceer++davv++ll+r+++lnrp+hv+nvdikDn+eeAlvg++aileLa++l+ a+ e           
  KKY20375.1 159 ipgqprldhqqkgdkgsvgTEGGVVDVIFTCEERCWDAVVDNLLDRGAPLNRPIHVFNVDIKDNSEEALVGGRAILELADMLNVAAGEertqrgtngwd 257
                 ***************99998889************************************************************9999889********* PP

                 .........HHHHHHHHHHHHHHHHT--.EEEEEEE CS
       Ssu72 165 .........leeevkeilaefeektkkl.llytvaf 190
                          ++e+v+eila+++ek+++l +l+t+ +
  KKY20375.1 258 qgsgparrgFDEKVPEILATWQEKWPNLpALWTLGW 293
                 *********************************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 2216.14
//
Query:       KKY20462.1  [L=840]
Description: hypothetical protein UCRPC4_g04164 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0003   21.0   0.8    0.00086   19.5   0.8    1.7  1  Arabino_trans_N  Arabinosyltransferase concanavalin like doma
     0.0019   18.1   0.7     0.0019   18.1   0.7    1.9  2  PAN_4            PAN domain


Domain annotation for each model (and alignments):
>> Arabino_trans_N  Arabinosyltransferase concanavalin like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.8   9.6e-08   0.00086      10      74 ..      46     108 ..      40     150 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 9.6e-08
                      SBTTB---EE--BSSBB-SEEEEEEEGGGGGGB-TT--EEEESS-TTSTTHHHHSEEEEEETTEE CS
  Arabino_trans_N  10 PqngslssvtaPLvsyvPvsldvtvpcaavaelpaeggvvlsTvPkeakdaakrGLfvrvtadsv 74 
                      Pq  +++++  PL sy P++ld+t  c++  +++++ + v +T+P +   a+++  +v +t+d+v
       KKY20462.1  46 PQYCTVDDILGPLTSYLPITLDATSFCSTYISIANTTSYVATTTPCKTVYATTT--VVATTTDTV 108
                      99999****************************************998877765..444444443 PP

>> PAN_4  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.8       1.1   9.8e+03      17      27 ..     358     368 ..     351     369 .. 0.75
   2 !   18.1   0.7   2.1e-07    0.0019      14      48 ..     390     423 ..     379     424 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.1
       PAN_4  17 speaCcaaCaa 27 
                    aC++ C +
  KKY20462.1 358 AKLACEDSCTE 368
                 56799999975 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 2.1e-07
       PAN_4  14 ladspeaCcaaCaadsnCnawvyvkpavkgayarC 48 
                  +d+ +aC+ +C++ ++C+++vy   ++ + + +C
  KKY20462.1 390 AVDTFGACQTLCDNSQGCVGFVYDL-TASSGENNC 423
                 578899*****************97.345555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1010  (0.0563333); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 5251.03
//
Query:       KKY20463.1  [L=293]
Description: hypothetical protein UCRPC4_g04165 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-21   74.4   0.5      8e-20   70.9   0.0    2.4  2  DUF2011   Fungal protein of unknown function (DUF2011)
  ------ inclusion threshold ------
      0.013   15.8   7.7      0.026   14.8   7.7    1.5  1  DUF755    Domain of unknown function (DUF755)


Domain annotation for each model (and alignments):
>> DUF2011  Fungal protein of unknown function (DUF2011)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   8.9e-24     8e-20       2      87 ..      66     182 ..      65     184 .. 0.97
   2 ?    0.9   0.5      0.06   5.4e+02      12      39 ..     240     267 ..     196     285 .. 0.71

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 8.9e-24
     DUF2011   2 eFrLFssaak.................aaktqklkirLrspspe....egeggfivpeRpksYYfaep..........lseeereqfeeaAvsgedvla 69 
                 eFrLFs ++k                 +++t+++kir+rsp+p     +g ggfi+p+R + YYf+ +            + +++qf+++Avsg d+  
  KKY20463.1  66 EFRLFSVPSKsnavnptvtsttqalptSSATRVHKIRIRSPTPLdtagDGAGGFINPHRHRGYYFTFSptndwdkefeIIDVRKAQFTDVAVSGPDIQV 164
                 9*************************999**************999999*****************999*********99******************* PP

     DUF2011  70 eaksrwpgcelpwrvihl 87 
                  a+++wpg++lp rv+h+
  KKY20463.1 165 LAQTKWPGTSLPFRVLHI 182
                 **99*************8 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.06
     DUF2011  12 aaktqklkirLrspspeegeggfivpeR 39 
                 +++ +k k rLr+++++++ +++i  +R
  KKY20463.1 240 RNREKKVKKRLRDKEKAAAAAATIAGSR 267
                 5666777777777777756666565555 PP

>> DUF755  Domain of unknown function (DUF755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   7.7   2.9e-06     0.026      20      91 ..     184     255 ..     178     276 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.9e-06
      DUF755  20 tqkqkkqkqssttgttdgalLqkqLlkEcqktsqLiqlsqqlqqkkqkkrkeqkkssqthkkkkkksrnvss 91 
                 + + k +++sstt tt+++l  +   + c+k + L+ +  q+++++++++ke+k++ + +kk kk+ r+  +
  KKY20463.1 184 ISQCKVPRPSSTTTTTENKLHSRRRPRLCKKRRILLRMKLQASKEAERSEKEKKTKRNREKKVKKRLRDKEK 255
                 56677889**********************************999899999988888888888888886332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1969  (0.109822); expected 358.6 (0.02)
Passed bias filter:                      689  (0.0384294); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.34s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 1748.70
//
Query:       KKY20464.1  [L=1275]
Description: putative patched sphingolipid transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-84  281.6   8.2    7.4e-84  281.1   8.2    1.2  1  NPC1_N          Niemann-Pick C1 N terminus
    3.2e-74  250.5  12.2    9.9e-74  248.8  12.2    1.7  1  Patched         Patched family
    2.3e-52  176.9   5.6    2.3e-52  176.9   5.6    2.8  2  Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activ
    5.1e-05   22.4   9.9    5.1e-05   22.4   9.9    2.7  2  MMPL            MMPL family
    0.00027   20.8   3.4    0.00058   19.8   3.4    1.5  1  Folate_rec      Folate receptor family
  ------ inclusion threshold ------
      0.022   14.8   0.2       0.04   14.0   0.2    1.4  1  CaM_bdg_C0      Calmodulin-binding domain C0 of NMDA receptor
        0.2   12.0   0.0       0.46   10.9   0.0    1.5  1  REV1_C          DNA repair protein REV1 C-terminal domain


Domain annotation for each model (and alignments):
>> NPC1_N  Niemann-Pick C1 N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.1   8.2   2.9e-87   7.4e-84       2     244 .]      30     267 ..      29     267 .. 0.95

  Alignments for each domain:
  == domain 1  score: 281.1 bits;  conditional E-value: 2.9e-87
      NPC1_N   2 grCalygeCgkksifgkelpcpyngpakelseearelLkelCpelfkeetkvCCdeeqletLkknlklaeellsrCpaClknflnlfCeftCspdqskF 100
                 grCa +g+Cgk+s+fgkelpcp+n++ake++++ r++L++lC+ +++ e++vCC+eeq+++L +nlk++++++++CpaC++nf+nlfC+ftCspdqs F
  KKY20464.1  30 GRCAARGHCGKQSFFGKELPCPDNDKAKEPESSLRQKLVDLCGPKWS-EGPVCCEEEQVDALASNLKIPQNIIASCPACKENFYNLFCSFTCSPDQSLF 127
                 89********************************************9.*************************************************** PP

      NPC1_N 101 lnvtktekkkeekeavkevdyliseefaekfydSCkdvkfpatngkamdlicGgaakknaqkwlkflgdeka.nggsPfqinfklseeeeeeeegmepl 198
                 +n+t+  k++++k++v+e+++l+ ee++ +fy+SCkdv+++at+gkamd+i+Gga  kn++++lkflgd+ka   gsPfqinf+ +e++   ++gme+l
  KKY20464.1 128 VNITQSGKSTSGKTVVTELSQLWGEEYSGGFYNSCKDVQNGATGGKAMDFIGGGA--KNYSQFLKFLGDKKAfGLGSPFQINFE-TEPKGGYDSGMEYL 223
                 *******************************************************..***************655*********.5589999******* PP

      NPC1_N 199 neetlkCnesldessaCsCvDCeesCpakpelpelke..sfkvggldg 244
                 +e++++Cn ++d++++C+C+DC+++C   p+lpe+k+  +++vg l++
  KKY20464.1 224 KETPKACN-DEDPAFRCACIDCPATC---PTLPEVKReeHCHVGLLPC 267
                 ********.999**************...55554444448****9987 PP

>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.8  12.2   3.9e-77   9.9e-74     144     807 ..     521    1236 ..     376    1238 .. 0.78

  Alignments for each domain:
  == domain 1  score: 248.8 bits;  conditional E-value: 3.9e-77
     Patched  144 gvkveeeegtlksakaivlqyflkldeeeveelskeyerelekllk..dkyase.hievsilhsqiledelqrnaktllpflvvtiaiLlvfsiivs 237 
                  g      + t ++a ++  + + + +  e e +++++e++ ++l+   + +a e  + +s+ ++++le+el++  +t +  +v++ +i+++++++  
  KKY20464.1  521 GFSGAA-NATQAEALVVTWVVNNHPQGSEGEAMAEDWEKAFKSLMLsiQGEAGErGLRLSFSTERSLEEELNQSTNTDAKIVVISYVIMFIYASLAL 616 
                  444444.333344444444444444556889999****998876541133333359*************************************9986 PP

     Patched  238 v....vlssd..alkidwvrskpilailgvlspvlAivsslGlllwlGfrfns.ivtvtPFLvLaiGvDdmflmvaawkrteakls...vkkrigea 324 
                       +++s   + ++ +v+sk+ l ++g++  ++++++s+Gl ++ G++    i  v+PFLvLa+GvD++fl+v++++r++ +++   + +r+++a
  KKY20464.1  617 GsgavTMKSLlnNPSNALVQSKFTLGVVGIIIVLMSVSASVGLFSAAGVKVTLiIAEVIPFLVLAVGVDNIFLIVHEFERVNLSHPdeeIDERVAKA 713 
                  53321333336678899********************************99861568**************************99988899****** PP

     Patched  325 lseagvaitiTslTdvlsFgiGaittlpaiqlFciytavailfdfiYqitffaavlaiaakaeaegrhsllliiekeespsklqeiesessekdddk 421 
                  l   g++i++   T+ ++F+iGa   +pa++ F++y+a a+l++ i q+t+f +vla+ +++  + r  ++++i+ ++  ++   +  ++       
  KKY20464.1  714 LGRMGPSILLSASTETIAFAIGAAVGMPAVKNFAAYAAGAVLINAILQVTMFISVLALNQRRVESLRADCFPCITVSR--ANTMGVPGGQ-----FY 803 
                  *************************************************************************99333..3333333333.....34 PP

     Patched  422 skeaeelkskffreiyapfllnksvrlvvlllfvvylaiaiyGcvnikegLepkklvledsplvevlkliekeiwkeglqvevvvn..Nppdltike 516 
                    + e+   +f+r++yap +l k+v+ +++++fv  +a a+  + ++  gL+   ++ + s+l+++++++    +  g  v  v    N  +l  ++
  KKY20464.1  804 ATDEESPLQYFIRKVYAPTILGKKVKTLIIVIFVSIFAAALSLVPEVALGLDQRIAIPDGSYLIDYFNDL-YVYLGIGPPVYFVTRdlNTTELVHQQ 899 
                  577777899***********************************************************98.55667777777766444889998888 PP

     Patched  517 srdrleelveefe....ntpyalgkk......stkfwlreyekflkqs....eleveeledeee..........................ewskeel 573 
                  +     +  +ef       ++a+ ++      +t  w+ +y ++l+ s    +++ +                                 +w+ +  
  KKY20464.1  900 QICGAFSTCDEFSleyiLKQEANRPNvsyitgATASWIDDYFSWLNPSsgccQENGHD-----CfadrehpwnvtlygmpegeefihyleKWIAAPT 991 
                  776555555555311112233333331111125778*********8865555444443.....13344479**********9655555555555555 PP

     Patched  574 esflkaaenslwkkdlvwdnesdeettelkkfrftla.lkdlseptdrtkllkelRsiadkeselnvtvfdedaafadqlltilpstiqnivlallc 669 
                  ++    a++  +++ lv+d  ++++tt  + fr     l+   ++ d   +++++ s  ++ ++++v  + +++ f dq+  i   t   +  a+++
  KKY20464.1  992 DQDCPNAGQAAYSNALVID--TEDTTTPATHFRTSHTpLRSQEDFIDAYAAARRISSDISSRHNIDVFPYSKHYIFFDQYTSIVQLTAALLCAAIAV 1086
                  5555556667788888888..7777777777776555455555555555555555554555666999999*************************** PP

     Patched  670 mfvvallfipelitvlvitlsivsidigviGflslWgvdLDpismitiimsiGfsvdlsaHiayafvrsekd..........dakeRvvealealgw 756 
                  +f+++ l++ ++ t +vi+++++ i i +iG++++  v L ++s++++++++G  v++ aHia af+  + +            ++R+  al ++g 
  KKY20464.1 1087 IFLISSLLLGSFATGFVIAITVIMIVIDIIGVMAIANVSLNAVSLVNLVICVGIGVEFCAHIARAFMFPSRSvmekarnkfrGKDARAWTALVNVGG 1183
                  ***************************************************************99975444334455556767789*********** PP

     Patched  757 PvvqgalST.ilgvlvLlfvdsymvqvF.fktvvLvvvigllHgLlilPills 807 
                   v+ g + T +lgv+vL+f  s + +v+ f+  +  v++   H+L++lP+ ls
  KKY20464.1 1184 SVFSGITITkLLGVVVLAFTRSKIFEVYyFRIWFALVIFASTHALVFLPVALS 1236
                  *****8887578*************9963788788889999*********997 PP

>> Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.9   5.6   9.1e-56   2.3e-52       2     152 ..     635     788 ..     634     789 .. 0.97
   2 ?   -3.9  11.8       4.2   1.1e+04       7     119 ..    1099    1222 ..    1096    1235 .. 0.70

  Alignments for each domain:
  == domain 1  score: 176.9 bits;  conditional E-value: 9.1e-56
                     HHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHCHHHHHHHHTTTCH...HHHHHHHHHHHCCCCHHCCCHHH CS
  Sterol-sensing   2 vkskfgLglagviivllsvasslgllaylgltltliilevlPflvlavgvdnifvlvkavqrtsrslde...seriaealgevgpsilltsltel 93 
                     v+skf+Lg++g+iivl+sv +s+gl+++ g+++tlii+ev+Pflvlavgvdnif++v++++r++ s+++   +er+a+alg++gpsill++ te+
      KKY20464.1 635 VQSKFTLGVVGIIIVLMSVSASVGLFSAAGVKVTLIIAEVIPFLVLAVGVDNIFLIVHEFERVNLSHPDeeiDERVAKALGRMGPSILLSASTET 729
                     99************************************************************9988776678*********************** PP

                     HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCTXXTTTXXXX CS
  Sterol-sensing  94 lalllgaltdvpavqeFclfaavavlvdFllqitfFvavLsldirreeserldvlcclk 152
                     +a+++ga++ +pav++F+ +aa avl++ +lq+t+F++vL+l++rr+es r+d+++c++
      KKY20464.1 730 IAFAIGAAVGMPAVKNFAAYAAGAVLINAILQVTMFISVLALNQRRVESLRADCFPCIT 788
                     *********************************************************96 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 4.2
                      HHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHCHHHHHHHHTTTCH.........HHHHHHHHHHHCCCCH.... CS
  Sterol-sensing    7 gLglagviivllsvasslgllaylgltltliilevlPflvlavgvdnifvlvkavqrtsrslde.........seriaealgevgpsil.... 86  
                        g+++ i+v++ v+  +g++a+ +++l+ ++l v   + + +gv+    + +a+   srs  e         + r   al +vg s++    
      KKY20464.1 1099 ATGFVIAITVIMIVIDIIGVMAIANVSLNAVSL-VNLVICVGIGVEFCAHIARAFMFPSRSVMEkarnkfrgkDARAWTALVNVGGSVFsgit 1190
                      5689999**************************.999999999**999899998876666655545555677788888888888887651111 PP

                      HCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH CS
  Sterol-sensing   87 ltsltellalllgaltdvpavqeFclfaavavl 119 
                      +t l  +++l++   +++  v  F ++ a+ ++
      KKY20464.1 1191 ITKLLGVVVLAFT-RSKIFEVYYFRIWFALVIF 1222
                      4444444444444.4555566666655555444 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   9.9     2e-08   5.1e-05     171     305 ..     643     775 ..     634     789 .. 0.86
   2 ?   -6.4  21.1         7   1.8e+04     145     274 ..    1076    1209 ..    1030    1250 .. 0.63

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2e-08
        MMPL 171 llplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedre..eaviravastgkvvtaaGltvaiamlgLvv 267
                 ++ ++ v++s+ a++gl      ++g++++  ++     l++avG+D   l+v  +      ++d+e  e v++a++++g+ ++ ++ t  ia++  ++
  KKY20464.1 643 VVGIIIVLMSVSASVGL----FSAAGVKVTLIIAEVIPFLVLAVGVDNIFLIVHEFERVNLSHPDEEidERVAKALGRMGPSILLSASTETIAFAIGAA 737
                 5669999*********9....456799********************777777777666555555432279**************************** PP

        MMPL 268 arlpvlaqvGvaialGvlvdvlivlTllPAllvllGra 305
                 + +p++++++ ++a +vl+ + + +T+  ++l+l  r+
  KKY20464.1 738 VGMPAVKNFAAYAAGAVLINAILQVTMFISVLALNQRR 775
                 ****************************9999987777 PP

  == domain 2  score: -6.4 bits;  conditional E-value: 7
        MMPL  145 lklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelst..fvlgllvvlliavGtDYallLvsRyreela.agedree 238 
                  ++ +  ++++vi++i  ++++S+++ +++ +tv++ ++  +g+++i a+++  ++s    v+   + + + + ++ a ++ sR   e a +  + ++
  KKY20464.1 1076 TAALLCAAIAVIFLISSLLLGSFATGFVIAITVIMIVIDIIGVMAI-ANVSLNAVSLvnLVICVGIGVEFCAHIARAFMFPSRSVMEKArNKFRGKD 1171
                  55677899***************************99999999443.33333333330022222223333444555666667743333302222222 PP

        MMPL  239 .aviravastgkvvtaaGltva..iamlgLvvarlpvla 274 
                    + +a+  +g+ v ++G+t+   + ++ L+++r ++++
  KKY20464.1 1172 aRAWTALVNVGGSV-FSGITITklLGVVVLAFTRSKIFE 1209
                  13556666666664.466666411445557777776666 PP

>> Folate_rec  Folate receptor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   3.4   2.3e-07   0.00058       6      85 ..      55     138 ..      49     171 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.3e-07
                 SSSESSXBSBSTGGGGGG.GGTTS.BSSBHHHHHHTTSSSXTTTSS.TTTTSCXXHHHHHHHHHHHHHHHHXSCCGGGEEE.......T CS
  Folate_rec   6 kkhkelpspeeklleeCs.pyken.sCCtsetseelssdesilanfrwerCgelsqeCekfleqlecfyecsphlglwikp.......e 85 
                 k ++++ s  +kl ++C  +++e   CC++e+ ++l+s+ +i +n+      +  ++C++ + +l c++ csp+++l+++        +
  KKY20464.1  55 KAKEPESSLRQKLVDLCGpKWSEGpVCCEEEQVDALASNLKIPQNI-----IASCPACKENFYNLFCSFTCSPDQSLFVNItqsgkstS 138
                 34444555566888889735888846***********999997765.....56679**********************54433554432 PP

>> CaM_bdg_C0  Calmodulin-binding domain C0 of NMDA receptor NR1 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   1.6e-05      0.04       1      21 [.     291     311 ..     291     312 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.6e-05
  CaM_bdg_C0   1 IaYKKHqirkqKqlELArhAa 21 
                 +aY++H+ r+ ++l+L   Aa
  KKY20464.1 291 VAYRRHKQRRSERLQLLQDAA 311
                 79**************88776 PP

>> REV1_C  DNA repair protein REV1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00018      0.46      42      89 ..     530     576 ..     522     578 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00018
      REV1_C  42 kavavlkwlrvlleee.eeskeeeageaWekafrevkeavqeavrkrgg 89 
                 +a+a++  +   ++++ ++s++e ++e+Wekaf+++  ++q  + +rg+
  KKY20464.1 530 QAEALVVTWV--VNNHpQGSEGEAMAEDWEKAFKSLMLSIQGEAGERGL 576
                 5566665554..5555459999********************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1142  (0.0636957); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.52
# Mc/sec: 7445.73
//
Query:       KKY20465.1  [L=701]
Description: putative ser thr protein phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-47  160.2   0.0    3.5e-47  159.6   0.0    1.3  1  DUF2433          Protein of unknown function (DUF2433)
    0.00028   21.1   0.0     0.0014   18.8   0.0    2.0  1  Metallophos_2    Calcineurin-like phosphoesterase superfamily
    0.00053   20.5   0.0     0.0012   19.4   0.0    1.6  1  Metallophos      Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
        3.6    6.5   5.1        5.3    5.9   5.1    1.1  1  CytochromB561_N  Cytochrome B561, N terminal


Domain annotation for each model (and alignments):
>> DUF2433  Protein of unknown function (DUF2433)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.6   0.0   7.7e-51   3.5e-47       1     124 []     287     416 ..     287     416 .. 0.95

  Alignments for each domain:
  == domain 1  score: 159.6 bits;  conditional E-value: 7.7e-51
     DUF2433   1 YgssyNefsvnpsleayrsklakskakfaevwetvkkeveaaid..eaqrklLenalevvekiPtiak......eeakkneastskekeesafknlWnf 91 
                 YgssyNefsvnp+l++yr+kla+ska+f++vwetv++eve+a++  + q+klL+nal++v k+P++a+      ++++ nea    + +esafkn+Wnf
  KKY20465.1 287 YGSSYNEFSVNPTLDHYRGKLAASKASFTDVWETVRGEVESALNtnDGQKKLLDNALDIVTKMPSVANggnpfgGPVAGNEA--GGQVDESAFKNMWNF 383
                 9******************************************99899********************99887767777665..6799*********** PP

     DUF2433  92 NLcDaaygslvldikegrigaelrsqGfnfayr 124
                 NL+Daayg lvl+++ grig+e+r+qGfnfa+r
  KKY20465.1 384 NLADAAYGYLVLEVEGGRIGTEMRAQGFNFAHR 416
                 *******************************98 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.2e-07    0.0014       2      96 ..      50     199 ..      49     221 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.2e-07
  Metallophos_2   2 klaiiSDlHsnldaleavlealkevgvdaiihaGD....................................................l.eeeepev 44 
                    +++ ++D+++nl+ l++++++ +++  d+iih+GD                                                    +   e p+ 
     KKY20465.1  50 RVLCVADVRGNLRSLNTLANQ-ARA--DYIIHTGDfgfydetsleriaektlkhvaqyspligegikrvigdappntglkarlnpkdVpLSELPQL 142
                    6899************99999.555..9*******8888888888888888888888888777777777777777777666666655233455578 PP

  Metallophos_2  45 leellela.pvlaVrGNnDeevveedvlreaaelgtdl....peeaelelagekvll 96 
                    l++ ++l  pv++V G +++  v e++  ++ ++++ +     +++ l+++g+k+ l
     KKY20465.1 143 LNKEFKLDiPVYTVWGACEDVRVLEKFRSAEYRVDNLHiideANSRLLDIGGVKLRL 199
                    888888889*********933355555555555555556774477777888888544 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.7e-07    0.0012       2      75 ..      50     161 ..      49     260 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.7e-07
                  EEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEEST..SSSSSHHHHHHHHHHHHHHHH.................................. CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddllreekpdlvllaGD..lvdrgdlekellellaalvky.................................. 63 
                  r+l+++D+      g+l++l++l +++    ++d+++++GD  ++d+++le   ++ l+++ +y                                  
   KKY20465.1  50 RVLCVADVR-----GNLRSLNTLANQA----RADYIIHTGDfgFYDETSLERIAEKTLKHVAQYspligegikrvigdappntglkarlnpkdvplse 138
                  89*******.....**********999....99**********9999988885555587777766555555555555555555555555555555555 PP

                  ...........TSEEEEEC-TTS CS
  Metallophos  64 ...........pipvylllGNHe 75 
                             +ipvy++ G +e
   KKY20465.1 139 lpqllnkefklDIPVYTVWGACE 161
                  55555555666777777777777 PP

>> CytochromB561_N  Cytochrome B561, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.1    0.0012       5.3     128     197 ..     470     540 ..     455     597 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0012
  CytochromB561_N 128 kpPksksslqasssevlvpl..hqsvsssssesrkgsdkssagsgkkleSistsskssaspsvylrsslvdl 197
                        Pks   + a + +   pl  + s ++ +s+s    + ++a++g   ++++t+sk +asp  + rs + ++
       KKY20465.1 470 AAPKSGPPPAAAPVTQGKPLtpQPSSTNVNSSSGPAEKAVPATNGAAEKAFDTPSKAAASP-AFDRSKPSPA 540
                      3344333222233322244422233333333555556678999******************.8989985442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:00.54
# Mc/sec: 3935.94
//
Query:       KKY20466.1  [L=387]
Description: putative bzip transcription factor (ap-1) [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-72  244.6  20.2    3.3e-69  234.4   3.0    2.9  3  PAP1         Transcription factor PAP1
    2.4e-08   33.9   9.4    5.1e-08   32.9   9.4    1.5  1  bZIP_1       bZIP transcription factor
  ------ inclusion threshold ------
       0.01   16.3   8.5      0.028   14.9   8.5    1.7  1  bZIP_Maf     bZIP Maf transcription factor
      0.038   13.6   0.0      0.069   12.8   0.0    1.3  1  IL11         Interleukin 11
      0.042   14.3   3.5      0.064   13.7   0.3    2.2  2  DUF16        Protein of unknown function DUF16
      0.048   14.3   0.0       0.15   12.7   0.0    1.9  1  SlyX         SlyX
      0.051   13.7  13.8       0.32   11.1  12.0    2.4  2  bZIP_2       Basic region leucine zipper
       0.13   12.9   0.5       0.46   11.2   0.5    2.0  1  dsrm         Double-stranded RNA binding motif
       0.22   11.4   2.1       0.35   10.8   0.7    2.1  2  PsiF_repeat  psiF repeat
       0.26   11.0   8.9      0.026   14.2   3.8    1.8  2  SHE3         SWI5-dependent HO expression protein 3
          2    6.6   7.8        3.4    5.9   7.8    1.3  1  CDC45        CDC45-like protein
        2.6    8.3   6.9         19    5.5   2.3    2.5  2  JIP_LZII     JNK-interacting protein  leucine zipper II
        5.2    7.1   7.1       0.76    9.8   3.0    1.6  2  UPF0242      Uncharacterised protein family (UPF0242) N-termi


Domain annotation for each model (and alignments):
>> PAP1  Transcription factor PAP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.6      0.31   4.2e+02      56     102 ..      74     127 ..      16     150 .. 0.42
   2 !   20.1   3.3   3.1e-07   0.00043       4      34 ..     176     205 ..     173     237 .. 0.67
   3 !  234.4   3.0   2.4e-72   3.3e-69     224     370 ..     235     384 ..     215     385 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.31
        PAP1  56 P........stsaststtssvesasasssesknqrsnslealtkednnnysnsaa 102
                          s + +++++ ++ +a+ + +++k+++  +le+  ++ +++ +++ +
  KKY20466.1  74 KkpgrkpltS-EPTSKRKAQNRAAQRAFRDRKEKHLRDLETKVESLEKASESTNH 127
                 0222222211.11111111112222222222222223333333222222222222 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 3.1e-07
        PAP1   4 vsnlnnnnFsFdFPkFGdLPGsqllngslsk 34 
                   n n+n+F+FdFP+FGdLP s   ++sls 
  KKY20466.1 176 KPNGNKNDFQFDFPRFGDLPSSV-PGTSLSS 205
                 56789**************9663.3344444 PP

  == domain 3  score: 234.4 bits;  conditional E-value: 2.4e-72
        PAP1 224 s...lgldwlaqqNGgQFDPvLFGdyRepqdavlsqdfdgsffndAfplpdlgspfhllpevqkqkatppkkdlieeidekld.eddevvpgedksqml 318
                 +   + ++wl qqNGg FDPvLF dyRepqda+++qdf gsffn+Afplpdlgsp+h+++ev++  at++k dl++++d++++ ed+  + +e++s+ml
  KKY20466.1 235 VppgNDFNWLVQQNGGNFDPVLFNDYREPQDAIIGQDF-GSFFNEAFPLPDLGSPLHNFSEVANLGATSQKGDLMKQVDAVQNgEDESTANSEQQSKML 332
                 245589********************************.*******************************************9556667899******* PP

        PAP1 319 tCtkiWdrlqsmekfrngeiDvDsLCseLrtKArCSegGvVvnqkdvedilk 370
                 tC+kiWdrlqsmekfrngeiDvD+LCseLr+KArCSeg +Vv++++v++ilk
  KKY20466.1 333 TCNKIWDRLQSMEKFRNGEIDVDNLCSELRAKARCSEGSAVVEKNEVDKILK 384
                 **************************************************97 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   9.4   3.7e-11   5.1e-08       8      62 ..      88     142 ..      86     144 .. 0.95

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 3.7e-11
                 XXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   8 krkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLkseleelkkevekLksk 62 
                 krk++NR a+r++R RK++    Le++v+ Lek  +s   e++ l+ +ve L+ +
  KKY20466.1  88 KRKAQNRAAQRAFRDRKEKHLRDLETKVESLEKASESTNHENGLLRAQVERLQVE 142
                 9*************************************************99866 PP

>> bZIP_Maf  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   8.5     2e-05     0.028      33      87 ..      88     142 ..      86     147 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2e-05
    bZIP_Maf  33 RRrlKNrgyakscrkrrlqqkeelekekeeleeelerlqqelsrlrqekdalkrk 87 
                  R+ +Nr +++  r+r+ +  ++le++ e+le++ e++++e+ +lr++ ++l+ +
  KKY20466.1  88 KRKAQNRAAQRAFRDRKEKHLRDLETKVESLEKASESTNHENGLLRAQVERLQVE 142
                 5899********************************************9999865 PP

>> IL11  Interleukin 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     5e-05     0.069      21      89 ..      92     159 ..      77     178 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5e-05
        IL11  21 LlkltkellkdhelkfpsdvehrlksLPalsnsasdlsslevkstLsqLhtdlksyekHfdWLkkvskk 89 
                  ++ ++++++d+++k   d+e + +sL + s+s ++ + l ++    +L+ +lk y+k + W+++    
  KKY20466.1  92 QNRAAQRAFRDRKEKHLRDLETKVESLEKASESTNHENGL-LRAQVERLQVELKEYRKRLSWVSNGGGL 159
                 56778999*************************9998887.9999******************987654 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.3   4.7e-05     0.064      27      79 ..      94     151 ..      71     161 .. 0.85
   2 ?    1.0   0.2      0.44   6.1e+02      59      96 ..     309     345 ..     293     349 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.7e-05
                 H.....B-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH... CS
       DUF16  27 e.....fkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeeln 79 
                       f+d  +++L+++e+kv++l++  +  +++   + +++++l+ve k  +++l 
  KKY20466.1  94 RaaqraFRDRKEKHLRDLETKVESLEKASESTNHENGLLRAQVERLQVELKEYRKRLS 151
                 1444569999*****************************************9998776 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.44
                 HHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHH CS
       DUF16  59 kqgekikelkveqkaqgeelnkvdetleliletLqkin 96 
                 kq + +++ + e  a +e+  k   t + i + Lq+++
  KKY20466.1 309 KQVDAVQNGEDESTANSEQQSK-MLTCNKIWDRLQSME 345
                 4444444444444444443222.334555566666555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00011      0.15       2      50 ..     105     153 ..     104     167 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXX CS
        SlyX   2 eerleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkel 50 
                 e++l +LE+k+  +e++ e+ n +    + q++rlq +l++ ++rl+ +
  KKY20466.1 105 EKHLRDLETKVESLEKASESTNHENGLLRAQVERLQVELKEYRKRLSWV 153
                 67899****************************************9655 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  12.0   0.00023      0.32       6      52 ..      86     140 ..      82     142 .. 0.80
   2 ?    3.2   1.2      0.07        96      28      53 ..     123     148 ..     120     149 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00023
                 XXXXX.XXXXXXXX-HHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHH CS
      bZIP_2   6 rerRr.kNreAarrsRekkkakeeeleervkeLee.......eNaqLrqkveqLe 52 
                 + +R+ +Nr+A r +R++k ++ ++le +v++Le+       eN  Lr++ve L+
  KKY20466.1  86 TSKRKaQNRAAQRAFRDRKEKHLRDLETKVESLEKasestnhENGLLRAQVERLQ 140
                 678888***************************9855555556777777777776 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.07
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  28 eeleervkeLeeeNaqLrqkveqLek 53 
                 e++ +++  L+++ ++L+ ++++++k
  KKY20466.1 123 ESTNHENGLLRAQVERLQVELKEYRK 148
                 67888889999999999999988765 PP

>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.5   0.00033      0.46      41      65 ..      77     101 ..      28     102 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00033
                 TEEEEEEEESSHHHHHHHHHHHHHH CS
        dsrm  41 gklygsGvgsnKKeAeqsAAedale 65 
                 g+++ + + ++K++A+++AA++a++
  KKY20466.1  77 GRKPLTSEPTSKRKAQNRAAQRAFR 101
                 5666677889*************87 PP

>> PsiF_repeat  psiF repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.2     3e+03      15      26 ..     300     309 ..     297     310 .. 0.76
   2 ?   10.8   0.7   0.00025      0.35       3      13 ..     326     336 ..     324     337 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.2
  PsiF_repeat  15 AkakaLkGdeRK 26 
                  A+++  kGd  K
   KKY20466.1 300 ATSQ--KGDLMK 309
                  8999..9*9766 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00025
  PsiF_repeat   3 aQQeKMktCNa 13 
                  +QQ+KM tCN+
   KKY20466.1 326 EQQSKMLTCNK 336
                  7*********8 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   3.8   1.9e-05     0.026      62     110 ..     102     150 ..      84     155 .. 0.87
   2 ?   -1.6   0.2       1.3   1.9e+03     161     161 ..     324     324 ..     296     369 .. 0.48

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH CS
        SHE3  62 kRKerrlkdlekelselkesveelklekkqlkkrlenssaseteleeel 110
                 +RKe++l+dle+++++l++  e+ + e+  l+ ++e+++ + +e +++l
  KKY20466.1 102 DRKEKHLRDLETKVESLEKASESTNHENGLLRAQVERLQVELKEYRKRL 150
                 7************************************998877776665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.3
                 X CS
        SHE3 161 s 161
                 +
  KKY20466.1 324 N 324
                 1 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   7.8    0.0024       3.4     140     230 ..      37     125 ..       9     156 .. 0.42

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0024
       CDC45 140 eeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee...sddddersrkrrrsepsakklrrqlkkerrkyeavlekyysqgtsygesv 230
                 ++ d+++e +e++++     +++d+e  +k+r+ ++++ ++   +  ++e+++kr+ ++   ++++r  +++++k+ + le+  ++ +  +es+
  KKY20466.1  37 SNGDNEHELHEKRKSVG--GKDADDEGGGKRREGEDKAAKKpgrKPLTSEPTSKRKAQN---RAAQRAFRDRKEKHLRDLETKVESLEKASEST 125
                 22222222222222222..2223333333334322222222344333334444444444...33344444444444444444444443333333 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   2.3     0.014        19      29      68 ..     109     148 ..     107     151 .. 0.91
   2 ?    4.5   0.2     0.029        41      28      68 ..     304     346 ..     301     347 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.014
    JIP_LZII  29 ddLIarvdeLtsereiLreEleslqkakerlesrikelEe 68 
                 +dL ++v+ L +  e+ ++E+  l+++ erl+ ++ke  +
  KKY20466.1 109 RDLETKVESLEKASESTNHENGLLRAQVERLQVELKEYRK 148
                 58889******************************99766 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.029
    JIP_LZII  28 kddLIarvdeLts.ere.iLreEleslqkakerlesrikelEe 68 
                 k dL+++vd  ++ e e + ++E +s + + +++ +r++ +E+
  KKY20466.1 304 KGDLMKQVDAVQNgEDEsTANSEQQSKMLTCNKIWDRLQSMEK 346
                 88********987333348888999888888999999988885 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.0   0.00055      0.76      85     139 ..      94     149 ..      62     152 .. 0.77
   2 ?   -2.6   0.1       3.5   4.9e+03      95     105 ..     318     328 ..     297     363 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00055
     UPF0242  85 ktkeealeelqeee.eeLkeeldakeeelerlkeenqqLqekleaiaedfeelkle 139
                 +  + a ++++e++ ++L+ ++++ e+++e  ++en  L+ + e  + + +e+++ 
  KKY20466.1  94 RAAQRAFRDRKEKHlRDLETKVESLEKASESTNHENGLLRAQVERLQVELKEYRKR 149
                 3344488888887647899**********************************986 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.5
     UPF0242  95 qeeeeeLkeel 105
                 ++e     e++
  KKY20466.1 318 EDESTANSEQQ 328
                 22222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1337  (0.0745719); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 2409.89
//
Query:       KKY20467.1  [L=298]
Description: hypothetical protein UCRPC4_g04169 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-08   32.5   0.0      1e-07   31.7   0.0    1.5  1  Tudor_3     DNA repair protein Crb2 Tudor domain
    4.3e-05   23.5   0.0      9e-05   22.5   0.0    1.4  1  DUF4537     Domain of unknown function (DUF4537)
    0.00043   20.1   0.0    0.00087   19.1   0.0    1.5  1  Tudor-knot  RNA binding activity-knot of a chromodomain
     0.0026   17.4   0.0     0.0081   15.8   0.0    1.8  1  Tudor_2     Jumonji domain-containing protein 2A Tudor domain
  ------ inclusion threshold ------
      0.015   15.4   0.0      0.063   13.4   0.0    2.0  2  DUF1325     SGF29 tudor-like domain
       0.04   14.0   0.4      0.078   13.1   0.4    1.4  1  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
      0.052   14.0   0.0       0.14   12.6   0.0    1.8  1  Agenet      Agenet domain
      0.059   13.4   0.0       0.32   11.0   0.0    2.0  3  TUDOR       Tudor domain
      0.092   12.6   0.1       0.28   11.0   0.0    1.8  2  LBR_tudor   Lamin-B receptor of TUDOR domain


Domain annotation for each model (and alignments):
>> Tudor_3  DNA repair protein Crb2 Tudor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   5.2e-11     1e-07       3      52 .]     115     166 ..     113     166 .. 0.92

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 5.2e-11
                 GEEEEE-SSSS--EEEEEEEEEEE-SSS.EEEEEETTS.-EEEEETTSEEES CS
     Tudor_3   3 nrVfAlfkGkkraYYPAtclgvsssgsq.rykVrFdDg.tpeevdskqvrrL 52 
                 + V+A +k+ +  +YPA++ + ++s+s+  y V F  + ++e++  k +r L
  KKY20467.1 115 DTVLARWKSGDGSFYPARITSITGSSSNpVYYVNFKNYnSTETLRDKDIRPL 166
                 68************************************88889998888876 PP

>> DUF4537  Domain of unknown function (DUF4537)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   4.5e-08     9e-05      55     110 ..     110     167 ..     103     174 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 4.5e-08
     DUF4537  55 slkvgDkVLAlhdpeeqeYvPGiVlagp.sakeeeltVrfydgk.kakvpreevikis 110
                 s kv+D+VLA++++++ +++P+ ++++  s+++  + V+f + + ++++++++++ ++
  KKY20467.1 110 SFKVNDTVLARWKSGDGSFYPARITSITgSSSNPVYYVNFKNYNsTETLRDKDIRPLP 167
                 7899*********************99999999999****997757889999988875 PP

>> Tudor-knot  RNA binding activity-knot of a chromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.4e-07   0.00087       2      41 ..     112     153 ..     111     154 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.4e-07
                 -TTTEEEEEE..TTSCEEEEEEEEEEETSSCEEEEEEETTS- CS
  Tudor-knot   2 evgckvlvrk..kdgelrkAeilsirekkgkyeYYVHYeefN 41 
                 +v+ +vl+r+  +dg++++A+i si  +++++ YYV + ++N
  KKY20467.1 112 KVNDTVLARWksGDGSFYPARITSITGSSSNPVYYVNFKNYN 153
                 6788999**999*****************************9 PP

>> Tudor_2  Jumonji domain-containing protein 2A Tudor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     4e-06    0.0081       2      31 ..     115     149 ..     115     150 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4e-06
     Tudor_2   2 qdVivrwt..DgryYnakvigv...ssqtfYeVeF 31 
                 ++V++rw+  Dg +Y+a+++++   ss   Y+V+F
  KKY20467.1 115 DTVLARWKsgDGSFYPARITSItgsSSNPVYYVNF 149
                 58*****999*******987662215789999999 PP

>> DUF1325  SGF29 tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0         1   2.1e+03      39      63 ..      34      55 ..       2      67 .. 0.58
   2 ?   13.4   0.0   3.1e-05     0.063      72     119 ..     108     157 ..      95     171 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1
     DUF1325 39 Dadpdeekekkkyklsaksiiplpk 63
                D+d   + e ++ k +++++i l +
  KKY20467.1 34 DPD---NGELQNLKSELEEVITLTE 55
                222...4445567777777777765 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3.1e-05
     DUF1325  72 laefpkgkkVLAlYPe.TTtFYkAeVvasp.kkkekeyklkFeddeeedk 119
                  a f+ +++VLA++     +FY+A + +   +++++ y ++F++ + +++
  KKY20467.1 108 PASFKVNDTVLARWKSgDGSFYPARITSITgSSSNPVYYVNFKNYNSTET 157
                 579***********98468*********886788999*****98877765 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   3.9e-05     0.078      14      48 ..      17      51 ..      14      53 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.9e-05
                HT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH CS
  Fis1_TPR_C 14 lgeYseArryvdalLeiEPenrQaqsLkeliedki 48
                ++eY+  ++ v+  L+ +P+n   q+Lk+ +e+ i
  KKY20467.1 17 MKEYKLQLETVQLSLQADPDNGELQNLKSELEEVI 51
                89***************************999876 PP

>> Agenet  Agenet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.3e-05      0.14      14      60 ..     125     167 ..     121     168 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.3e-05
      Agenet  14 rGaWfrAtilkvkegd...kylVeYddlddddgskpleEwvdasdiRPlp 60 
                 +G++++A i+++ +++    y+V +++        + +E+   +diRPlp
  KKY20467.1 125 DGSFYPARITSITGSSsnpVYYVNFKN-------YNSTETLRDKDIRPLP 167
                 69**********444423477777777.......4556778889****99 PP

>> TUDOR  Tudor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.4   4.7e+03      32      47 ..      11      26 ..       6      41 .. 0.69
   2 ?   -1.2   0.0      0.97   1.9e+03      23      48 ..      32      59 ..      24      84 .. 0.65
   3 ?   11.0   0.0   0.00016      0.32      49     107 ..     107     169 ..     100     174 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.4
                HHHHHHHHHHHTSSCC CS
       TUDOR 32 eklteelqeyyaskkk 47
                + l  e++ey+ + + 
  KKY20467.1 11 AALEAEMKEYKLQLET 26
                5678888888888877 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.97
                EEGGHHHHHHHHHHHHHHHHTSSCC..T CS
       TUDOR 23 qpkeqskkleklteelqeyyaskkk..a 48
                q  +++ +l++l +el+e+ +  +   a
  KKY20467.1 32 QADPDNGELQNLKSELEEVITLTETaiA 59
                5667778889999999988887777542 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00016
                 CSSS--TT-EEEEEETT.TTEEEEEEE...EEECTTTEEEEEETTTSBEEEEEGGGEEE--GG CS
       TUDOR  49 ellapavgegcvavfse.dgkwyRAki...teslddqkveVlfiDyGntetvpvsdlrelpse 107
                 ++ + +v+++++a+ ++ dg +y A+i   t s +++ ++V f  y +tet+  +d+r+lps+
  KKY20467.1 107 VPASFKVNDTVLARWKSgDGSFYPARItsiTGSSSNPVYYVNFKNYNSTETLRDKDIRPLPSD 169
                 56667788888888765388*****************************************65 PP

>> LBR_tudor  Lamin-B receptor of TUDOR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00014      0.28       4      55 .]     109     164 ..     106     164 .. 0.76
   2 ?   -3.0   0.0       3.3   6.6e+03       5      15 ..     260     270 ..     258     271 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
   LBR_tudor   4 kkfqdgevVmgRW.PGSsLyyevkvlsf..dekkqlYtVkykDGT.elelkesdik 55 
                 ++f+  ++V++RW  G   +y  +++s   ++++ +Y V++k     + l+++di+
  KKY20467.1 109 ASFKVNDTVLARWkSGDGSFYPARITSItgSSSNPVYYVNFKNYNsTETLRDKDIR 164
                 68999********559999******99833456679*****975303457777775 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.3
   LBR_tudor   5 kfqdgevVmgR 15 
                  f  ge V +R
  KKY20467.1 260 MFRTGESVNAR 270
                 6999****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 1834.67
//
Query:       KKY20468.1  [L=334]
Description: putative glyoxalase bleomycin resistance protein dioxygenase superfamily [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.8e-23   81.2   0.0    5.8e-22   78.7   0.0    1.9  1  Glyoxalase_3   Glyoxalase-like domain
  ------ inclusion threshold ------
       0.18   12.4   9.2       0.33   11.5   9.2    1.4  1  Ribosomal_60s  60s Acidic ribosomal protein
       0.39   10.8   5.0       0.75    9.9   5.0    1.4  1  MelC1          Tyrosinase co-factor MelC1


Domain annotation for each model (and alignments):
>> Glyoxalase_3  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   9.6e-26   5.8e-22       1     174 [.       7     236 ..       7     238 .. 0.71

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 9.6e-26
  Glyoxalase_3   1 lDHvvlavp.dleeaaarfarrlGftvtpggehpglgtaNalvmfgdg.YlElla.vdpeap..aperp.rlfgldrlakgeglhtlal.....rtd 86 
                   lDH++l++p +l     +   + +ft+ pgg+h+++ t+N+l++++dg YlEl++ +d++ +  +p+r+ +++g++    + g++++al     + +
    KKY20468.1   7 LDHIILLIPhSLLLNLPES-LTSNFTILPGGRHADGLTENKLIVLQDGvYLELISfIDDDIDkkSPGREtHWWGAK----EWGVIDWALtypstT-T 97 
                   8********9555555554.3669*********************9999******767665522444332466655....457777777555431.1 PP

  Glyoxalase_3  87 didataarlr...................................aaGvd.......eagrrvrpdggdlrwrllfladealpa...egalPfliqw 138
                    ++a+aa+ +                                   a   +       ++g+r+ p+g++++w+++f++    p+   +g +Pf++  
    KKY20468.1  98 AAAAAAAA-AaaaaaaaaetqepiadpkefleiqgkvsssssppnA---SsinyadpKPGGRTLPSGTKIAWAVAFPDTSPAPDrsvRGLVPFFCFD 190
                   11111111.1233444456666666776666665555555555542...04447778888889999999*********97777799*********77 PP

  Glyoxalase_3 139 gasdpa........ladhpngalglaelviavsdp..eataerlae 174
                   ++++ +        +++hp+ga+g+ +++i ++++   ++++ +++
    KKY20468.1 191 KTPRNLrvpvdiseNTTHPCGARGVNGVEILAPKKsvGEVRRVYEA 236
                   77766689999999999***************99865666666665 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   9.2   5.6e-05      0.33      52      71 ..      98     117 ..      82     128 .. 0.44

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.6e-05
                    XXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  52 aaaaaaaaaaaaaaaeekkk 71 
                    aaaaaaaaaaaaaaa+++ +
     KKY20468.1  98 AAAAAAAAAAAAAAAAAETQ 117
                    22222222222222222222 PP

>> MelC1  Tyrosinase co-factor MelC1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   5.0   0.00013      0.75       7      40 ..      95     128 ..      90     147 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00013
       MelC1   7 tagaalaglaaasasaaeapakaegsaepesFDe 40 
                 t++aa a++aaa+a aa a++++e+ a+p++F e
  KKY20468.1  95 TTTAAAAAAAAAAAAAAAAAETQEPIADPKEFLE 128
                 55566567777888888899************66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2129.85
//
Query:       KKY20469.1  [L=455]
Description: putative c3hc zinc finger protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-32  111.7   7.7    2.5e-29  102.0   0.5    3.1  2  zf-C3HC   C3HC zinc finger-like
    1.3e-23   82.9   1.7    3.5e-22   78.4   0.4    2.8  2  Rsm1      Rsm1-like
     0.0019   18.8   0.9       0.18   12.5   0.1    2.6  2  BIR       Inhibitor of Apoptosis domain
  ------ inclusion threshold ------
        0.1   12.8   0.9       0.23   11.6   0.1    2.0  2  PI_PP_I   Phosphoinositide phosphatase insertion domain


Domain annotation for each model (and alignments):
>> zf-C3HC  C3HC zinc finger-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.5   5.6e-33   2.5e-29       1     130 [.      90     246 ..      90     249 .. 0.96
   2 !   11.8   1.6   4.2e-05      0.19      23     101 ..     282     358 ..     259     394 .. 0.71

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 5.6e-33
     zf-C3HC   1 pwdredllrRlkTfkalk.W.tskpselselkcAkrGWkcvskdrlkCe.vCgaslvlkl........................ksseeesdeqlnkkl 72 
                 p ++ ++l+Rl+T++  + W + ++++++++++A+rGW+cv +dr+ C   C+a++++kl                         ++  e++++  +kl
  KKY20469.1  90 PHSQPAFLSRLSTYSPIQnWrIGSSEKINAVQWARRGWSCVGRDRVACRgGCEAEMLVKLeddqqkveeetqniesdggendeeRQEAAEIEAENHRKL 188
                 57899**********9988******************************99*****************************99887778888899999** PP

     zf-C3HC  73 aekylkqlveaHeenClWrnkecpesleslplakpeellsdlkkrldellqladklps 130
                 ++ky++ +v+aH e+C Wr k+c++s+++lpl +++ +++dl+ r+dell++++klp 
  KKY20469.1 189 VDKYAELIVSAHLEHCHWRRKGCDASIQRLPLLNTQISIHDLQMRYDELLKKSSKLPT 246
                 ******************************************************9997 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 4.2e-05
     zf-C3HC  23 pselselkcAkrGWkc....vskdrlkCevCgaslvlklksseeesdeqlnkklaekylkqlveaHeenClWrnkecpesles 101
                 ++  s+  +A  GW+     ++ d ++C +C ++l l         +++   ++    + + ve+H + C+W+++e +++  +
  KKY20469.1 282 EQSRSAFLLALAGWESsgtlTDVDVVECRSCFRRLGLW---LY---CQKGPGETPTMEHLDAVESHLDFCPWKSSEAQHTELE 358
                 555567778999**99776677***************9...33...3333333333344556799********9998754444 PP

>> Rsm1  Rsm1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.03   1.4e+02      50      69 ..     196     215 ..     171     231 .. 0.77
   2 !   78.4   0.4   7.9e-26   3.5e-22       1      90 [.     287     375 ..     287     377 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.03
        Rsm1  50 vleeHleycPwknakaqkel 69 
                 +++ Hle+c w+ +  +  +
  KKY20469.1 196 IVSAHLEHCHWRRKGCDASI 215
                 5789*******988766655 PP

  == domain 2  score: 78.4 bits;  conditional E-value: 7.9e-26
        Rsm1   1 AlalalfGWdsl.tssrlglvsCeaCfrrlGLWmfkskedgelsvvkrldvleeHleycPwknakaqkelakeseakeeeskagwellkql 90 
                 A+ lal GW+s  t + + +v C+ CfrrlGLW++ +k  ge+ ++++ld +e+Hl++cPwk+ +aq+   + +++k++ s  gw+ll++ 
  KKY20469.1 287 AFLLALAGWESSgTLTDVDVVECRSCFRRLGLWLYCQKGPGETPTMEHLDAVESHLDFCPWKSSEAQHTELEIEGQKQNLS--GWQLLSRN 375
                 899******7651556678************************************************99998888888665..***99876 PP

>> BIR  Inhibitor of Apoptosis domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.014        63       1      49 [.      99     145 ..      99     164 .. 0.71
   2 !   12.5   0.1   4.1e-05      0.18       9      65 ..     280     337 ..     269     348 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.014
         BIR   1 RlatFkk..nWpeskkeakpsaeeLaeaGFyytptseskdnvqCf.yCklal 49 
                 Rl+t++   nW+  + ++k +a + a+ G+ + ++    d+v+C   C+ ++
  KKY20469.1  99 RLSTYSPiqNWRIGS-SEKINAVQWARRGWSCVGR----DRVACRgGCEAEM 145
                 7888864447*9665.5589999***********9....*****52687765 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 4.1e-05
         BIR   9 WpeskkeakpsaeeLaeaGFyytptseskdnvqCfyCklaldgw.....eedDdpleeHkkh 65 
                 W e    ++ sa  La aG+  ++t ++ d v+C  C ++l  w      +++ p+ eH+  
  KKY20469.1 280 WSE----QSRSAFLLALAGWESSGTLTDVDVVECRSCFRRLGLWlycqkGPGETPTMEHLDA 337
                 552....34556679***************************99333323455888888765 PP

>> PI_PP_I  Phosphoinositide phosphatase insertion domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   5.2e-05      0.23      25      76 ..     219     270 ..     203     282 .. 0.87
   2 ?   -2.9   0.0       1.7   7.8e+03      47      57 ..     373     383 ..     344     390 .. 0.47

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.2e-05
                 SHHHHHHHHHHHHHHHHHHHHH-SSHHHHHHHHHCT-SS--HHHHTS-HHHH CS
     PI_PP_I  25 slkklkqdlnqfllkWeeikktslsLeedLnkiannktplPsWfnelskaqq 76 
                  l + + ++ ++ ++++e+ k+s++L ++++ i+ n+ p P ++n+l    q
  KKY20469.1 219 PLLNTQISIHDLQMRYDELLKKSSKLPTNIRLISDNEGPEPDFLNKLTSDSQ 270
                 5667788999*************************************98776 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.7
                 -SSHHHHHHHH CS
     PI_PP_I  47 slsLeedLnki 57 
                 s ++e +++ki
  KKY20469.1 373 SRNVEREMSKI 383
                 33344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1223  (0.0682135); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3173.78
//
Query:       KKY20470.1  [L=406]
Description: putative sequence orphan [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2874.39
//
Query:       KKY20471.1  [L=337]
Description: putative mitochondrial dicarboxylate carrier [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-56  185.9   1.8    2.5e-19   69.0   0.0    3.1  3  Mito_carr        Mitochondrial carrier protein
  ------ inclusion threshold ------
      0.038   14.3   0.2       0.41   10.9   0.1    2.2  2  COX7C            Cytochrome c oxidase subunit VIIc
       0.42    9.7   1.7        1.8    7.7   0.0    2.6  3  Serine_protease  Gammaproteobacterial serine protease


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.1   9.7e-20   5.8e-16       8      94 ..      48     134 ..      43     137 .. 0.94
   2 !   57.1   0.0   2.2e-19   1.3e-15       3      95 ..     144     238 ..     142     240 .. 0.91
   3 !   69.0   0.0   4.2e-23   2.5e-19       5      90 ..     246     333 ..     243     337 .] 0.92

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 9.7e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   8 ellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                  ++ Gglag++at+v++P+d++K+rlq++++  ++  + ++l v + i+ +  ++ ly Gl++ llr+a+++ +++++++t++++l 
  KKY20471.1  48 PFVNGGLAGMFATSVIQPVDMIKVRLQLAGEGVRTGPRPSALGVTRDIIASGKILDLYTGLSAGLLRQAVYTTARLGFFDTFQNMLS 134
                 5899****************************99988888********************************************986 PP

  == domain 2  score: 57.1 bits;  conditional E-value: 2.2e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS..HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa..ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 ++++++ laG++ag +a++v +P d++ +r+q+++ + ++++ ++  ++d+lk+i  +eG+ +l+ G+ p++lr +  ++ +++++   k  l++
  KKY20471.1 144 VTFAERSLAGLTAGGLAAMVGNPADLALIRMQSDGLKPAAQRANYrsVFDALKRITATEGIGALWAGCYPTVLRAMALNFGQLSFFSESKAQLNR 238
                 789999***************************99998887777688*****************************9999999999988887765 PP

  == domain 3  score: 69.0 bits;  conditional E-value: 4.2e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS..HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa..ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlk 90 
                 ++++l a+++ag +a+++  P+d+vKtrlq q+k  ++ k  +  ++d+ +k++k+eG + +yrG++   +r+ap +++++ + ++lk
  KKY20471.1 246 TQRTLTASAIAGFFASFFSLPFDFVKTRLQKQQKDPSTGKLPYngFWDCARKVIKDEGWLRFYRGFGTYYVRIAPHAMVTLIVADYLK 333
                 57899****************************998887766678*************************************999988 PP

>> COX7C  Cytochrome c oxidase subunit VIIc
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.1     6e+02      15      34 ..      24      52 ..      11      63 .. 0.60
   2 ?   10.9   0.1   6.8e-05      0.41      36      64 .]     248     276 ..     229     276 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.1
                ..........XXXX-S--STTTSSSS--S CS
       COX7C 15 r.........srsghykegpysnLPFskn 34
                +         ++   +++  ++ LPF+  
  KKY20471.1 24 KeavenpaqaKNDLLHHPYTRAALPFVNG 52
                44444444454444555588999***654 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 6.8e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
       COX7C  36 KipfavkywgflgvgFalPFlavrwQlkK 64 
                 ++  a  + gf++++F+lPF  v+  l+K
  KKY20471.1 248 RTLTASAIAGFFASFFSLPFDFVKTRLQK 276
                 555566789***********888877766 PP

>> Serine_protease  Gammaproteobacterial serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.17   9.9e+02      21      32 ..      63      74 ..      44     145 .. 0.65
   2 ?   -0.4   0.1     0.084     5e+02     172     192 ..     145     165 ..     126     169 .. 0.82
   3 ?    7.7   0.0   0.00029       1.8     137     198 ..     207     271 ..     197     286 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.17
  Serine_protease 21 tsPfkalLtnlq 32
                      +P+ ++ ++lq
       KKY20471.1 63 IQPVDMIKVRLQ 74
                     334444444444 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.084
  Serine_protease 172 elynkllaGalsGviAtvltt 192
                      ++ ++ laG ++G +A+++  
       KKY20471.1 145 TFAERSLAGLTAGGLAAMVGN 165
                      567889999999999999865 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.00029
  Serine_protease 137 LtsggfgsrslaGfvnFaalgvvedeiak...flkindelynkllaGalsGviAtvlttifnsyk 198
                      L+ g + +   a  +nF  l ++ ++ a+     +  +e+ + l+a a++G  A++++ +f   k
       KKY20471.1 207 LWAGCYPTVLRAMALNFGQLSFFSESKAQlnrHAPSLTETQRTLTASAIAGFFASFFSLPFDFVK 271
                      666677777777889******999876651115667789999*****************997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2155.86
//
Query:       KKY20472.1  [L=351]
Description: putative mrna cap methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-53  181.4   0.0    4.8e-35  121.2   0.0    2.3  2  Pox_MCEL         mRNA capping enzyme
    4.4e-10   40.1   0.0    7.1e-05   23.4   0.0    2.3  2  Methyltransf_25  Methyltransferase domain
    2.8e-08   34.4   0.0    9.7e-08   32.7   0.0    1.9  1  Methyltransf_12  Methyltransferase domain
    2.7e-06   28.0   0.0       0.07   13.8   0.0    2.5  2  Methyltransf_11  Methyltransferase domain
      4e-05   23.5   0.0    6.4e-05   22.8   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
     0.0001   22.1   0.0     0.0036   17.1   0.0    2.1  2  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.017   14.3   0.0       0.03   13.5   0.0    1.3  1  NNMT_PNMT_TEMT   NNMT/PNMT/TEMT family


Domain annotation for each model (and alignments):
>> Pox_MCEL  mRNA capping enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.2   0.0   1.9e-38   4.8e-35      59     207 ..      27     195 ..      23     206 .. 0.88
   2 !   57.8   0.0   3.8e-19   9.8e-16     207     332 ..     233     350 ..     225     351 .] 0.86

  Alignments for each domain:
  == domain 1  score: 121.2 bits;  conditional E-value: 1.9e-38
    Pox_MCEL  59 kldesnklkvLdldcgkGgDLeKyekg..eIsklvatDiaeesieeckeRYnklrsekkskyykFdaelirsdsfvssvrev..fed............ 141
                 ++de++ l vLd++cgkGgDL K++++  ++  +v+ D+ae+s+++++ RY  +r++++     Fda++++ d+f + + +v  +++            
  KKY20472.1  27 THDETQPLLVLDIGCGKGGDLGKWQQApqAVGLYVGLDPAEQSVAQARDRYIGMRRGRRPI---FDARFVAKDCFGEWIGDVpiVQEvgidgsvgpggn 122
                 568999*******************9855799**************************998...*************99986325558999******** PP

    Pox_MCEL 142 .......yelkfdivslQFaiHYsFeseekartvlrNvaellasGGkvlgTtpdgdelskltvkklkviekdl 207
                        +++ fd+v + F++HYsFe e+kar++l+Nva +l++GG+++g  p++d +s+++    +  + ++
  KKY20472.1 123 mmaarwgKTGGFDVVTMMFTMHYSFENEQKARMMLKNVAGSLKKGGRLIGVCPNSDIISSRVAAWHQKRKDEK 195
                 *****9999*************************************************998874444333333 PP

  == domain 2  score: 57.8 bits;  conditional E-value: 3.8e-19
    Pox_MCEL 207 lpsfgNsiyvvkfeeekiev....plfGakYeynledvvkdvpEyivkfealvklaeeYgleLvdkkdfaeiieesikke.lkklikrvskleerkstk 300
                  p++gNs+y vkf   ++ +    p+ G kY+y++e++v dvpEy+v+ ea+++lae+Y+le  ++k+f +i e + ++  l  l  r+         +
  KKY20472.1 233 SPRWGNSLYNVKFTGVTPPDgvfrPATGWKYTYWMEEAV-DVPEYVVPWEAFRALAEDYNLEQRYRKSFLDIWESDNNDPiLGPLAVRMG-------VR 323
                 589***********988888889999*************.***********************************966666777777777.......44 PP

    Pox_MCEL 301 nfeelnrsalkstlgkdeeealsyYlvfvfeK 332
                  fe+     l   ++ +e+ea+ +Y +f f K
  KKY20472.1 324 KFEG---GPL--NISDEEREAVGFYHAFCFTK 350
                 3433...333..47789999999999999999 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   2.8e-08   7.1e-05       1      42 [.      36      78 ..      36     101 .. 0.80
   2 !   14.5   0.0   1.7e-05     0.044      61      97 .]     130     168 ..     121     168 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.8e-08
                     EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHH CS
  Methyltransf_25  1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaarerae 42
                     vLd+GcG+G ++ +++++ +  + ++g+D++e+ +++ar r+ 
       KKY20472.1 36 VLDIGCGKGGDLGKWQQAPQaVGLYVGLDPAEQSVAQARDRYI 78
                     9***************996457999**************9984 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.7e-05
                      STTTEEEEEEESTGGG.SSHHH.HHHHHHHHHHHEEEEE CS
  Methyltransf_25  61 edgsfDlvvssgalhh.lsded.lekalkeiarvLkpgG 97 
                      + g fD+v++++++h+ +++e+ ++ +lk++a  Lk+gG
       KKY20472.1 130 KTGGFDVVTMMFTMHYsFENEQkARMMLKNVAGSLKKGG 168
                      5678***********9987765156799**********9 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   3.8e-11   9.7e-08       1      99 []      37     170 ..      37     170 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 3.8e-11
  Methyltransf_12   1 LeiGcGtGsllralleklpdie.ytgvDispsaiedakeklakrennnnnnv..elealdlldldgg........................... 64 
                      L+iGcG G  l  + ++ + +  y+g+D+ ++++++a+ +    ++ +   +  ++ a+d    +g+                           
       KKY20472.1  37 LDIGCGKGGDLGKWQQAPQAVGlYVGLDPAEQSVAQARDRYIGMRRGRRPIFdaRFVAKD---CFGEwigdvpivqevgidgsvgpggnmmaar 127
                      8*************99985555166*********99999998777655444400444444...4444777************************ PP

  Methyltransf_12  65 ....ssfDlvvasnvlhhl....kdirevldnirklLkpgGrl 99 
                          + fD+v++ +++h+     ++ r +l+n++  Lk+gGrl
       KKY20472.1 128 wgktGGFDVVTMMFTMHYSfeneQKARMMLKNVAGSLKKGGRL 170
                      **********************88888**************97 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.7e-05      0.07       1      38 [.      37      77 ..      37      97 .. 0.85
   2 !   11.7   0.0   0.00012      0.31      61      95 ..     133     171 ..     126     172 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
                     EEET-TTSHHHHHHH...HTT.SEEEEEES-HHHHHHHHHHC CS
  Methyltransf_11  1 LdvGcGtGrlaeala...krg.arvvgvDlskemlklakeka 38
                     Ld+GcG+G  + +++   + + + +vg+D++++ +++a++++
       KKY20472.1 37 LDIGCGKGGDLGKWQqapQ-AvGLYVGLDPAEQSVAQARDRY 77
                     8*************95544.26****************9886 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00012
                      -EEEEEEES-CCC-....CCHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11  61 sfDlvvssevlhhv....edpekalkeiaRvLkpgGllv 95 
                       fD+v++ +++h+     ++ +  lk++a  Lk+gG+l+
       KKY20472.1 133 GFDVVTMMFTMHYSfeneQKARMMLKNVAGSLKKGGRLI 171
                      6************99887788899************997 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.5e-08   6.4e-05      25     128 ..      35     191 ..      13     211 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.5e-08
  Methyltransf_23  25 rvLdiGcGtGillevl..rengf.svtgvDlspeaveiae..............kakkaqkdqfdeqeaae....................... 78 
                       vLdiGcG+G  l     +++ +  ++g D+ ++ v+ a+               a++  kd+f e                            
       KKY20472.1  35 LVLDIGCGKGGDLGKWqqAPQAVgLYVGLDPAEQSVAQARdryigmrrgrrpifDARFVAKDCFGEW---Igdvpivqevgidgsvgpggnmma 125
                      69********88777733444447889**********999**********99998888888888222...233445555555555554444444 PP

  Methyltransf_23  79 ....pqgkfdlIvlrevle.hvpd...ppellrqiatllkpgGylllseplasl........kedr 128
                          + g fd+++++++++ ++++     + l+++a  lk gG+l+   p+++         +++r
       KKY20472.1 126 arwgKTGGFDVVTMMFTMHySFENeqkARMMLKNVAGSLKKGGRLIGVCPNSDIissrvaawHQKR 191
                      4444667******998775367765447799*******************9875555555333333 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.4e-06    0.0036       5      47 ..      34      76 ..      30      95 .. 0.86
   2 ?    2.9   0.0     0.033        84      74     134 ..     133     206 ..     121     230 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.4e-06
  Methyltransf_31  5 lrvlDlGCGtGeltfelaeelgpkae..vvGiDiseeaielAren 47
                     l vlD+GCG+G ++ ++ +   p+a   +vG+D  e+++ +Ar +
       KKY20472.1 34 LLVLDIGCGKGGDLGKWQQ--APQAVglYVGLDPAEQSVAQARDR 76
                     569***************4..3444456**************975 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.033
  Methyltransf_31  74 kfDlilsnevl.naladpdki...leeiervlkpggilliedpr...........llaelpakveeeskayevveg 134
                       fD+++   ++ + + + +k+   l+++   lk+gg+l+   p+           ++++ ++kv++ ++  +++ +
       KKY20472.1 133 GFDVVTMMFTMhYSFENEQKArmmLKNVAGSLKKGGRLIGVCPNsdiissrvaawHQKRKDEKVQSGEN--GDATH 206
                      6888888777744444444431115599999*******9888887776666554333333366666666..44444 PP

>> NNMT_PNMT_TEMT  NNMT/PNMT/TEMT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.2e-05      0.03     159     196 ..     134     171 ..     124     178 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.2e-05
                     EEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEE CS
  NNMT_PNMT_TEMT 159 advvvtifcleaacedleeylralrnlasllkpGGhlv 196
                     +dvv  +f++ ++ e+ ++ +  l+n+a+ lk+GG+l+
      KKY20472.1 134 FDVVTMMFTMHYSFENEQKARMMLKNVAGSLKKGGRLI 171
                     8************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2660.10
//
Query:       KKY20473.1  [L=463]
Description: putative chromosomal organization and dna repair protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-17   63.0   0.9    2.9e-17   62.2   0.9    1.4  1  zf-Nse        Zinc-finger of the MIZ type in Nse subunit
    6.3e-06   26.1   0.1    1.8e-05   24.7   0.0    1.8  2  zf-RING_UBOX  RING-type zinc-finger
    0.00065   19.8   0.6     0.0025   17.9   0.6    1.9  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
    0.00065   19.5   2.0     0.0029   17.4   0.1    2.2  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
     0.0075   16.1   0.5      0.018   14.9   0.5    1.7  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.012   15.0   0.1      0.021   14.2   0.1    1.4  1  YPEB          YpeB sporulation
      0.098   12.4   3.8       0.91    9.3   3.8    2.2  1  zf-MIZ        MIZ/SP-RING zinc finger
       0.22   11.7   0.4       0.76    9.9   0.4    1.9  1  Zn-ribbon_8   Zinc ribbon domain
       0.38   11.1   1.4          1    9.8   1.4    1.7  1  zf-RING_2     Ring finger domain


Domain annotation for each model (and alignments):
>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.9   1.5e-20   2.9e-17       1      56 [.     284     351 ..     284     352 .. 0.96

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 1.5e-20
                 SXXXXXSSBXXSB-TTTSSB-SSEEEESSS--EEEHHHHHHHC..............TTTS-EE-SCCC- CS
      zf-Nse   1 delaieeerislkCPltlqpfeePvtskkCpHvFEreaIleli..............krkktvkCPvagC 56 
                 ++l++  eris +CP+t ++f++Pvts+kC H+FE  aIl+++              + +kt+ CPv  C
  KKY20473.1 284 EDLEVMAERISGRCPITTEYFRNPVTSTKCGHSFEHYAILQMMkppapsrsqrsqtqSLVKTTPCPV--C 351
                 79***************************************************999888999*****..8 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   8.9e-09   1.8e-05       1      39 []     297     349 ..     297     349 .. 0.76
   2 ?   -0.3   0.1      0.58   1.2e+03       1       9 [.     348     356 ..     348     367 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 8.9e-09
  zf-RING_UBOX   1 CpIClelftdPlv..lpCGHtFCreCl.........w....elskslegafkCP 39 
                   CpI  e f +P v  ++CGH+F +  +               +++sl ++  CP
    KKY20473.1 297 CPITTEYFRNP-VtsTKCGHSFEHYAIlqmmkppapSrsqrSQTQSLVKTTPCP 349
                   ***********.54459**********977665544145577777777777777 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.58
  zf-RING_UBOX   1 CpIClelft 9  
                   Cp+C  ++t
    KKY20473.1 348 CPVCDVPLT 356
                   ****87777 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.6   1.3e-06    0.0025       1      31 [.     297     328 ..     297     351 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.3e-06
  zf-C3HC4_4   1 CPiCldYLekPv.sleCGhsfClsCisslqke 31 
                 CPi ++Y+ +Pv s +CGhsf    i +++k 
  KKY20473.1 297 CPITTEYFRNPVtSTKCGHSFEHYAILQMMKP 328
                 ***********94589*****77777776665 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.4e-06    0.0029       1      31 [.     296     326 ..     296     329 .. 0.88
   2 ?    1.0   0.4      0.19   3.8e+02      29      40 .]     340     351 ..     337     351 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.4e-06
  zf-C3HC4_2   1 kCpiCldmlkdpsvvtpCgHvfCqkCilrsL 31 
                 +Cpi  + + +p+++t+CgH+f    il+++
  KKY20473.1 296 RCPITTEYFRNPVTSTKCGHSFEHYAILQMM 326
                 6*********************877777655 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.19
  zf-C3HC4_2  29 rsLeekneCPlC 40 
                 +sL +   CP+C
  KKY20473.1 340 QSLVKTTPCPVC 351
                 578888899*99 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.5   9.3e-06     0.018       1      41 []     297     351 ..     297     351 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.3e-06
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC..............TSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilks..............rkkvkCPlC 41 
                 Cpi +e++ +p+++++C+Hsf +  i++++k                k+++CP+C
  KKY20473.1 297 CPITTEYFRNPVTSTKCGHSFEHYAILQMMKPpapsrsqrsqtqslVKTTPCPVC 351
                 9*****************************9999999999999888888889999 PP

>> YPEB  YpeB sporulation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   1.1e-05     0.021      96     188 ..      83     194 ..      81     235 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
        YPEB  96 gdfsyslakkdldgepLteeeyktLeeLyeqakelekeLrkvqekvaegglrwge...................lekalaseqekadntiidgnfktve 175
                 ++++++ a+ +++ge+ +e++  +Le+L    + l+++L k+ +++ + ++  ++                   + +++a+ q+ +++++i+++  +++
  KKY20473.1  83 ENYAKKRARIEANGEEPNEDDLRQLETLTGRIDGLTQRLDKTMREIVDSNIFVSAlpgivdevkngaagtstqlTTTTFAQSQRRTRARVIEDEEDEID 181
                 589************************************************999966655555555555443332333333444444666666666666 PP

        YPEB 176 kevekypeliydG 188
                 +e+ ++   + dG
  KKY20473.1 182 SELGEVGHADIDG 194
                 6666666666666 PP

>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.8   0.00046      0.91       1      37 [.     293     327 ..     293     354 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00046
                 EESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHH CS
      zf-MIZ   1 vslkCplslsrikiPvrgekCkHlqCfdlesylelne 37 
                 +s +Cp++++  + Pv + kC H   f+ ++ l++++
  KKY20473.1 293 ISGRCPITTEYFRNPVTSTKCGHS--FEHYAILQMMK 327
                 5779*******************7..88888888875 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.4   0.00038      0.76       9      33 ..     311     352 ..     310     357 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00038
  Zn-ribbon_8   9 eeCghefe...vlqsisdap..............lta.CPeCg 33 
                  ++Cgh fe   +lq ++ +p              +t+ CP C 
   KKY20473.1 311 TKCGHSFEhyaILQMMK-PPapsrsqrsqtqslvKTTpCPVCD 352
                  58********9888666.33458999999999997777***96 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.4   0.00051         1       3      43 ..     297     351 ..     295     352 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00051
   zf-RING_2   3 CpICleelssadsvlllpCgHvfhreCl...........erwlrssst............CPlC 43 
                 CpI +e +   + v+ ++CgH+f +  +           +       +            CP+C
  KKY20473.1 297 CPITTEYFR--NPVTSTKCGHSFEHYAIlqmmkppapsrS-------QrsqtqslvkttpCPVC 351
                 899887774..5666668*****66666255444444330.......02344567777789999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       900  (0.050198); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 2978.98
//
Query:       KKY20474.1  [L=894]
Description: putative essential cytoplasmic protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-33  113.4   0.7      2e-32  111.1   0.2    2.5  2  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
  ------ inclusion threshold ------
        2.2    8.2   6.3         17    5.3   3.2    2.3  2  Utp11            Utp11 protein


Domain annotation for each model (and alignments):
>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.27   2.4e+03      54      91 ..     126     159 ..     121     162 .. 0.67
   2 !  111.1   0.2   2.2e-36     2e-32       2      98 ..     790     887 ..     789     888 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.27
  Atx10homo_assoc  54 rnLlegneenqelvaeLeakgvvdeevLeelgleveid 91 
                      rnLl  ++++q+    L a++  d++ L+ + ++v+++
       KKY20474.1 126 RNLLATTRKAQN----LAAEKGFDQQILRLIHVCVKVT 159
                      888888888886....4555666666666666666665 PP

  == domain 2  score: 111.1 bits;  conditional E-value: 2.2e-36
  Atx10homo_assoc   2 KrelvrllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeLeakgvv..deevLeelgleveided 93 
                      K+ +v +l++lv+k++ vq+++re +g+e+iLs++++D++nP+i+e+a++++++Llegn+enqe+v +Lea++vv   eevLee+g+e++i+  
       KKY20474.1 790 KKLIVLVLSSLVWKSPVVQNQIREYGGVETILSCTVFDAHNPYIKEHAVMCLKFLLEGNRENQEIVDQLEAREVVstAEEVLEEMGVEARIE-G 882
                      999***********************************************************************75689************5.8 PP

  Atx10homo_assoc  94 gklkl 98 
                      gk+kl
       KKY20474.1 883 GKVKL 887
                      **998 PP

>> Utp11  Utp11 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   3.2    0.0019        17     128     221 ..     326     445 ..     279     466 .. 0.65
   2 ?    3.6   0.1    0.0062        56      51      61 ..     555     565 ..     550     579 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0019
       Utp11 128 s.....................kkkkknkhivFvdseeeakefdaaekfetepelleeeee....eekeerkenrkkvkqk.ekkkeklykeLkarler 200
                 +                     ++++ +k iv +d++ +  + +++++++  p+l +  ++    +e +e++ ++++ +q+ +++ +++  eL arl+ 
  KKY20474.1 326 KvgaalraqlpakdfprgakplTAQQVRKAIVSIDKKAQTAQSKDTNWSDL-PNLNQYGNSsvrnTELTEEDMSMPRSSQSaAETLQEAKDELMARLQD 423
                 055555555555555555555555556788888888888888777776554.33333222245555555566666665555688888888888888776 PP

       Utp11 201 .ekqLkkaeqelelqralmkkg 221
                  + +L++ae + el+r+  + +
  KKY20474.1 424 vAPHLTEAETQQELERNSTQAS 445
                 2568999999999999987443 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0062
       Utp11  51 pDEFyfgMiks 61 
                 +DEFyf+M+ +
  KKY20474.1 555 DDEFYFKMMVQ 565
                 6*******976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (894 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       978  (0.0545485); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 5982.06
//
Query:       KKY20475.1  [L=275]
Description: putative glutamic protease eqolisin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-82  276.7  15.9    1.2e-82  276.4  15.9    1.1  1  Peptidase_A4  Peptidase A4 family


Domain annotation for each model (and alignments):
>> Peptidase_A4  Peptidase A4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.4  15.9   6.7e-87   1.2e-82       1     209 []      71     274 ..      71     274 .. 0.99

  Alignments for each domain:
  == domain 1  score: 276.4 bits;  conditional E-value: 6.7e-87
  Peptidase_A4   1 snwaGavlespesgftsVtgtftvPklslpsggdesaeysasawVGiDGaadtcssallqaGvdftvdsnGeqsydawyewyPayavdfsglavsaG 97 
                   +nwaG+vl +  sg+t+Vtg++tvP+++ psgg++s+ey+asawVGiDG  dtc++a+lq+Gvdf+v+  +++syd+wyewyP+ya+dfsg+++saG
    KKY20475.1  71 TNWAGVVLIG--SGYTAVTGEITVPTPTKPSGGSSSTEYCASAWVGIDG--DTCDTAILQTGVDFCVQ-GSSVSYDGWYEWYPDYAYDFSGITFSAG 162
                   69********..*************************************..9****************.888************************* PP

  Peptidase_A4  98 DsvtvtvtatsatsgtvtieNlstgqsvtktlsapssklcgqsAeWivEdfesgg.lvplanFgtvtFtdasattsdgksvglsgatiidieqngtv 193
                   D+v++tvtats+++g++++eN +tg++vt+t+s++s++lc+++AeWivEdf++++ lvp+a+FgtvtFtda atts+g +vg+sg+ i+di+qng+v
    KKY20475.1 163 DVVKMTVTATSKSAGSAVLENVTTGKTVTHTFSGESNTLCETNAEWIVEDFSENNsLVPFADFGTVTFTDAYATTSSG-TVGVSGGSILDIKQNGQV 258
                   ****************************************************9999**********************.****************** PP

  Peptidase_A4 194 ltsvevsgdsevtvsy 209
                   ltsv++sg++ev ++y
    KKY20475.1 259 LTSVSTSGSEEVIIEY 274
                   ************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2103.48
//
Query:       KKY20671.1  [L=906]
Description: putative ribonucleotide reductase large subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-193  644.1   0.0     2e-193  643.7   0.0    1.1  1  Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain
    3.1e-22   78.4   0.0    2.7e-21   75.4   0.0    2.5  3  Ribonuc_red_lgN  Ribonucleotide reductase, all-alpha domain
    1.1e-15   58.0   0.0    2.3e-15   56.9   0.0    1.6  1  ATP-cone         ATP cone domain


Domain annotation for each model (and alignments):
>> Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  643.7   0.0  3.3e-197    2e-193       1     524 []     216     739 ..     216     739 .. 0.98

  Alignments for each domain:
  == domain 1  score: 643.7 bits;  conditional E-value: 3.3e-197
                      EEE......BSS-EEEE-X..............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX CS
                      xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC   1 ssCfvlsv.edslesIletvkeaallskaggGvGlnlsklRakgslvkgtegaasGpvsfmklidavadvvkqgG.kRrGAamvylevwHpDie 92 
                      ssCf++++ eds+e+I++t+k++a++sk++gG+Gln++++Ra+gs+++gt+g+++G+v+++++++++a++v+qgG kR+GA ++yle+wH D++
       KKY20671.1 216 SSCFLIDMkEDSIEGIYDTLKTCAMISKTAGGIGLNIHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQGGnKRPGAFAIYLEPWHSDVF 309
                      8*******9************************************************************************************* PP

                      XXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.........................XXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC  93 kfidaKekntgeeenrlsnlnisvgvpdlFmeavkedkdwtLfsPrtvvkleklygeefeeeyeeleekakikkkevkakeLfeeiaesawetg 186
                      +f+d++ kn+g+ee+r+++l++++++pdlFm++v+++++wtLf+P++++ l ++yg+efe  y+++e++   +++++ka++L+ +i+e++ etg
       KKY20671.1 310 EFLDLR-KNHGKEEVRARDLFYALWIPDLFMKRVEKNQEWTLFCPHEAPGLADVYGDEFEVLYAKYEQE-GRGRRTMKAQKLWYAILEAQTETG 401
                      ******.**************************************************************.55567******************* PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 187 ePgvlfkDtiNrrnvlekakggkIratNlCgEiplleyes.vavCnLasinLakfvkkdeegkkefdwdelkkviqlvvraLdnvidvnkyplp 279
                      +P++l+kD++Nr++++  ++ g+I+++NlC+Ei+ ++ ++ vavCnLas+ L++fv   +e + e+d+ el++v+q+v+r+L++vidvn+yp+p
       KKY20671.1 402 NPFMLYKDACNRKSNQ--KNLGTIKSSNLCTEIIEYTAPDeVAVCNLASLSLPAFV---DERSGEYDFGELHRVVQVVTRNLNKVIDVNYYPVP 490
                      ****************..999******************999**************...56799****************************** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..X......XXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx RF
  Ribonuc_red_lgC 280 eiekntkktRriGlGvmgladalaklgipydseealkfarkitelltyyaykaSvelAkergpfplfekskyskgilpvdef..eekekedwee 371
                      e++k+++++R++GlGv+glada++kl++p+ds+ea++++ +i+e+++++a+++S++lA+e+g+++++ +s++s+gil++d++  ++++ +dwe+
       KKY20671.1 491 EARKSNMRHRPVGLGVQGLADAFLKLRLPFDSPEARQLNTQIFETIYHAALTMSCQLAQEQGTYETYAGSPVSQGILQYDMWnvKPTDLWDWES 584
                      **********************************************************************************6655669***** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 372 LreeikkyGlrnamvtalaPTgsiSliagtssgiePifalvykksvtvgeflevnpvfeeeLkklglwseellkki...lesvqgleeipeeik 462
                      L+++i+k+G+rn+ ++a +PT+s+S+i g+++++eP+++++y+++v +gef +vnp+++++L +lglws++++++i    +s+q++++ip++ik
       KKY20671.1 585 LKADIAKHGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQVVNPYLLKDLVNLGLWSDNMKNRIvasGGSIQDIPNIPTDIK 678
                      ****************************************************************************655555************ PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 463 rvfktaldidqedhikaqaaiqkwidqsiSktinlpneatvedvkelyllAwklGlKgvtyY 524
                      +++kt+++i+q+++++++a++  +idqs+S++i++ +e t+ +++++++ +wklGlK+ +yY
       KKY20671.1 679 ALYKTVWEISQRQIVQMAADRGAFIDQSQSLNIHM-KEPTMGKITSMHFAGWKLGLKTGMYY 739
                      ***********************************.*************************9 PP

>> Ribonuc_red_lgN  Ribonucleotide reductase, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.31   1.9e+03      28      48 ..      15      43 ..       1     126 [. 0.65
   2 !   75.4   0.0   4.5e-25   2.7e-21       2      82 ..     142     212 ..     141     213 .. 0.96
   3 ?   -2.1   0.0      0.66   3.9e+03      21      47 ..     529     555 ..     525     630 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.31
  Ribonuc_red_lgN 28 pqqmfmRvAlalaiaealyd........k 48
                      +++ +RvA+++ + + +y          
       KKY20671.1 15 FDKITARVARLCYGLDPNYVdpaaitqkV 43
                     45678899998888776654444444440 PP

  == domain 2  score: 75.4 bits;  conditional E-value: 4.5e-25
  Ribonuc_red_lgN   2 kltynalkvledrYllkdengeivEspqqmfmRvAlalaiaealydkleedkdlaeefydlmssqkflpasPtlmnaGtel 82 
                      +++y+++k++e++Yllk  n+ ++E+pq+m mRvA+++ +         +d +++ e+y+l+s + f++asPtl+naGt++
       KKY20671.1 142 NYQYFGFKTMERSYLLKIGNK-PAERPQHMLMRVAVGIWG---------DDIERVLETYKLLSLKTFTHASPTLFNAGTPQ 212
                      689****************76.******************.........9*****************************96 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.66
  Ribonuc_red_lgN  21 ngeivEspqqmfmRvAlalaiaealyd 47 
                      n++i+E++ +    ++  la+++  y+
       KKY20671.1 529 NTQIFETIYHAALTMSCQLAQEQGTYE 555
                      567999999999999999998666554 PP

>> ATP-cone  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   3.9e-19   2.3e-15       1      86 []       1      89 [.       1      89 [. 0.98

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 3.9e-19
                -EEE-TTS-EEE--HHHHHHHHHHHHHH.-HHHHHHHHHHHHHHHHHHHIIT-BHHHHHHHHHHHHH....HSS-HHHHHHHHHHHHHHHH CS
    ATP-cone  1 ikViKRdGtvepfdvekIkraiekAceg.seeeideiaeeveaevrkrlrdgisteeIqdlvektli....ehpdyavaaayilyrnlrke 86
                ++V+KRdG++e +  +kI++++++ c g +++++d+    + ++v ++ + g++t e+++l ++t++    +hp+ya +aa+i ++nl+k+
  KKY20671.1  1 MYVVKRDGRKERVQFDKITARVARLCYGlDPNYVDPA--AITQKVISGVYQGVTTVELDNLAAETAAymtiTHPQYADLAARIAVSNLHKQ 89
                89***************************99999999..9999**********************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (906 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.51
# Mc/sec: 5350.34
//
Query:       KKY20672.1  [L=122]
Description: hypothetical protein UCRPC4_g04139 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.064   13.6   0.2        4.2    7.8   0.0    2.3  2  Nif11     Nif11 domain


Domain annotation for each model (and alignments):
>> Nif11  Nif11 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0    0.0051        92      28      42 ..      47      62 ..      32      62 .. 0.75
   2 ?    7.8   0.0   0.00023       4.2      17      42 ..      73      97 ..      68      98 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0051
       Nif11 28 dheevv.alAkeaGye 42
                 +ee+  ++A+++Gy+
  KKY20672.1 47 QKEEFRkDIARRNGYT 62
                56777669*******5 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00023
       Nif11 17 palreqlkacsdheevvalAkeaGye 42
                p+l+e++  + d+e ++alA ++G++
  KKY20672.1 73 PTLHEKFELV-DREGRAALALAHGFD 97
                8899999998.**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.47
# Mc/sec: 785.13
//
Query:       KKY20673.1  [L=391]
Description: hypothetical protein UCRPC4_g04140 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2520.40
//
Query:       KKY20674.1  [L=335]
Description: putative sterigmatocystin 8-o-methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-11   41.7   0.0    2.9e-06   26.7   0.0    2.3  2  Methyltransf_2  O-methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.6e-10   2.9e-06      61     104 ..     202     247 ..     144     260 .. 0.83
   2 !   13.0   0.0   2.5e-06     0.045     179     206 ..     265     292 ..     248     295 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.6e-10
                     GG-SEEEEET-TTSHHHHHHHHH-TT-..EEEEEE-HHHHHHHHHH CS
  Methyltransf_2  61 eglkslvDvGGGtGalakaivsayPti..kvivfDlpeVveaAkeh 104
                        + lvDvGGG G  ++a ++ yP++  ++++ Dlp+V+++ ++ 
      KKY20674.1 202 DAAPLLVDVGGGCGHDLAALSRRYPNLpgRLVLQDLPHVINDVPNL 247
                     456789********************84467889*******99875 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.5e-06
                     HHHHHHHHHHCSS-----HHHHHHHHHH CS
  Methyltransf_2 179 telvdlimlvqteGkeRteaeyeellse 206
                     + ++d+ m++ + G+eR+e+e+++ll +
      KKY20674.1 265 KAGLDFAMMFWHAGMERSEEEWRKLLRS 292
                     34569********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 2114.62
//
Query:       KKY20675.1  [L=316]
Description: putative major facilitator superfamily [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-09   36.4  28.4    5.2e-06   25.6   7.3    2.6  3  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   7.7   2.9e-09   5.1e-05      24     101 ..      25     102 ..       7     112 .. 0.75
   2 !   25.6   7.3   2.9e-10   5.2e-06     211     350 ..     110     262 ..     100     265 .. 0.68
   3 ?   -1.9   0.5     0.067   1.2e+03     134     149 ..     286     301 ..     275     311 .. 0.47

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.9e-09
       MFS_1  24 aedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlgaga 101
                 a +  ++ s +   +++  ++++ + +++ +l++r+Gr +vl+++ ll++++ ++++ +a+s+  + ++r lqG++  a
  KKY20675.1  25 AAEWEMTISDVANSISGGIFLQGPGGVLAVPLIQRYGRLPVLFWSQLLSCAM-VIAAaLAPSYSGFTACRTLQGFFNTA 102
                 55555666666666777788899*****************************.555536566669**********9744 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 2.9e-10
       MFS_1 211 illialllfffgfsg.lltllpl......ylqevlglsglllaglllallalvgailallagrlsdr............lgrrrrlllallllllaalg 290
                 +++i ll++   +++ ++t ++       yl  +      l+++ll+ ++ ++++ + +++ +l d             + +++rl+ a ++++++  g
  KKY20675.1 110 AIFILLLTM---WTIgITTSITQfvkpppYLFPD------LSVALLYLAPTIGTLTAEIWGHYLNDLiqkryikthlgvWRPENRLWGAWPAVIVSMGG 199
                 222222222...2222222222211113344444......444445555555555556555555566666899999999999***************** PP

       MFS_1 291 lallavtssavllllvlvl.iGf.glgfv..fpsllalasdlappeeagtasglfntagslgga 350
                 l+ll+ t    l++l++++ +G+ ++g+   ++ + +++ d +p ++a+ as+++n+ ++ gg+
  KKY20675.1 200 LILLGQTLQHRLTWLGIAFgWGMnAFGLLagTTVISTYILDCFP-DHAAGASSWINMWRTTGGF 262
                 *******8888888877777*******99999999999999998.66666*********99987 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.067
       MFS_1 134 ailgpllggllasslg 149
                 ai++ ++ +++a++++
  KKY20675.1 286 AIIAVGFTAIIATQFW 301
                 2344444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2146.49
//
Query:       KKY20676.1  [L=351]
Description: putative farnesylated protein pex19 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-67  225.7   9.7    7.3e-67  225.7   9.7    1.5  2  Pex19     Pex19 protein family
  ------ inclusion threshold ------
       0.32   11.1   8.7      0.056   13.6   3.0    2.4  2  FliE      Flagellar hook-basal body complex protein FliE
       0.81   10.3   5.8        1.5    9.5   0.9    2.9  3  ING       Inhibitor of growth proteins N-terminal histone-bin
       0.84    7.4   5.2       0.43    8.3   0.0    2.1  2  Nup88     Nuclear pore component
        3.2    8.5   8.0        2.4    8.9   0.1    2.8  3  RsbRD_N   RsbT co-antagonist protein rsbRD N-terminal domain
        9.4    6.3   6.7        1.1    9.3   0.6    2.6  3  KIX_2     KIX domain


Domain annotation for each model (and alignments):
>> Pex19  Pex19 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.1   3.3e+03      30      60 ..      29      59 ..      19      68 .. 0.63
   2 !  225.7   9.7   2.5e-70   7.3e-67       2     227 ..      79     332 ..      78     351 .] 0.83

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.1
       Pex19 30 eedfeellkqleeaaeaaaeaksaeasssaa 60
                 ed +++l+q++ +++ + ++++++++++++
  KKY20676.1 29 YEDLDDILDQFNPSTAPKPSSSQNAPTAAQT 59
                5677888888887666665555555444433 PP

  == domain 2  score: 225.7 bits;  conditional E-value: 2.5e-70
       Pex19   2 eeeefakqlekemeelmkel.........keeeeee....aeedfeellkqlee.........................aaeaaaeaksaeasssaaes 62 
                 +e+ef++ql++e+e+ m++l         +   + +      ++ ee+++++e+                         a ++++++++ +++ sa   
  KKY20676.1  79 SEAEFVAQLQAEFEKTMANLgsppsdakeQ---A-SeitgMGKEIEEFTRNMEKqglqpedllrailgeegidpsklppAGSSDTKTDEGDKAGSA--- 170
                 689*****************9987653222...2.1355678888888888888******************988876544444444444444444... PP

       Pex19  63 kaeeesfqdiikkTlerLkesgdkvdaaaeseeknsddllaqlLkqLeagadvegeggeegedlekmllgmmeqLssKevLyePlkelnekfpewLeen 161
                 ++++ sf+++i+kTler++ s++++++a +s++++++d+laql+k++e+ ++++   g++++dl++++l+mm qL+sK++LyeP+kel++kfp+wL++n
  KKY20676.1 171 SESKGSFDETIRKTLERMQASDSSARDADQSTSDSDEDILAQLMKAMESADSGG---GGDDGDLSNLFLNMMHQLTSKDLLYEPMKELDDKFPDWLDKN 266
                 4569*************************9*****************6664433...334579************************************ PP

       Pex19 162 keklsaedlerYekQaeivkeIvakFekedysdedkekreeilellqelqelGspPkeLvgdmpeg 227
                 +ekl++edl+rYe+Q  ivkeIv+kFe+++y+d+++++r+ ++e++q++q+ GspP++L+++  +g
  KKY20676.1 267 REKLKSEDLQRYETQKIIVKEIVDKFEEKTYDDSNEKDRAFVWEKMQKMQAEGSPPDDLISAPFPG 332
                 ************************************************************873333 PP

>> FliE  Flagellar hook-basal body complex protein FliE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.3      0.37   1.1e+03      13      35 ..      76      98 ..      67     132 .. 0.53
   2 ?   13.6   3.0   1.9e-05     0.056       6      64 ..     163     221 ..     158     223 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.37
        FliE 13 aaasaesFasvLksaleevnetq 35
                +++s+++F + L++  e++ ++ 
  KKY20676.1 76 SNQSEAEFVAQLQAEFEKTMANL 98
                33344466666666666655543 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.9e-05
        FliE   6 assakaaaaasaesFasvLksaleevnetqkeaeelaeafalGesvdlhdvmialqkAs 64 
                 + +++ +a++s++sF+++++++le+++++ ++a+++ ++    +++ l+++m a++ A+
  KKY20676.1 163 EGDKAGSASESKGSFDETIRKTLERMQASDSSARDADQSTSDSDEDILAQLMKAMESAD 221
                 5566677778888*******************************9***********996 PP

>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.62   1.9e+03      17      45 ..      92     123 ..      76     142 .. 0.48
   2 ?    1.4   0.1      0.17   4.9e+02      13      40 ..     178     205 ..     169     223 .. 0.60
   3 ?    9.5   0.9   0.00049       1.5      11      66 ..     258     316 ..     250     321 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.62
                 HHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
         ING  17 qrnltelreiDakvqellkei...dskiekfl 45 
                 ++ +  l       +e+  ei    ++ie+f 
  KKY20676.1  92 EKTMANLGSPPSDAKEQASEItgmGKEIEEFT 123
                 33333333333333333333322233333333 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         ING  13 PlelqrnltelreiDakvqellkeidsk 40 
                  + +++ l+++++ D + +++ ++ +++
  KKY20676.1 178 DETIRKTLERMQASDSSARDADQSTSDS 205
                 4556777777777777777666555433 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00049
                 GHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHTS..S-HHHHHHHHH..HHHHHH CS
         ING  11 nLPlelqrnltelreiDakvqellkei.dskiekflkngslqknekeeels..riqeel 66 
                 ++P++l +n ++l+  D + +e++k i ++ ++kf +++  ++nek++++   ++q+++
  KKY20676.1 258 KFPDWLDKNREKLKSEDLQRYETQKIIvKEIVDKFEEKTYDDSNEKDRAFVweKMQKMQ 316
                 79*************************45555566688889999999998887888766 PP

>> Nup88  Nuclear pore component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00014      0.43     483     539 ..     160     218 ..     145     220 .. 0.73
   2 ?   -0.5   2.3     0.067     2e+02     563     610 ..     263     313 ..     253     319 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00014
       Nup88 483 kedveveeplrklqedsFeehIkslLqrs.vsnpil.sadkksskspkEclqllsratq 539
                 k+d+  ++   + ++ sF+e+I++ L+r  +s+     ad+ +s+s++++l +l +a++
  KKY20676.1 160 KTDEGDKAGSASESKGSFDETIRKTLERMqASDSSArDADQSTSDSDEDILAQLMKAME 218
                 3333333333444559************85555555799****************9986 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.067
       Nup88 563 lkkqkeq.qleelqsleeerkslseraeklAek.yeeikdkQeklv.rrvk 610
                 l k++e+ + e+lq+ e ++ +++e ++k  ek y++ ++k  ++v ++++
  KKY20676.1 263 LDKNREKlKSEDLQRYETQKIIVKEIVDKFEEKtYDDSNEKDRAFVwEKMQ 313
                 566666624689******************998799999887765424555 PP

>> RsbRD_N  RsbT co-antagonist protein rsbRD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00081       2.4      31      92 ..      77     140 ..      69     142 .. 0.86
   2 ?    2.4   1.7     0.082   2.5e+02      34      78 ..     172     217 ..     156     241 .. 0.68
   3 ?   -1.5   0.0       1.4   4.1e+03      44      79 ..     284     316 ..     253     328 .. 0.48

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00081
     RsbRD_N  31 llseaelreqlrelldallaalas..eqldleseeeeelrealdelsrsRarqgftpsetasfv 92 
                 + seae+ +ql++ ++   a+l s  ++++++++e + + + ++e++r++ +qg +p++ ++++
  KKY20676.1  77 NQSEAEFVAQLQAEFEKTMANLGSppSDAKEQASEITGMGKEIEEFTRNMEKQGLQPEDLLRAI 140
                 56999999999999999999999975444899999999********************999887 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.082
     RsbRD_N  34 eae..lreqlrelldallaalaseql.dleseeeeelrealdelsrsR 78 
                 e+   ++e++r+ l+ + a  +s++  d+++++ +  +++l++l++ +
  KKY20676.1 172 ESKgsFDETIRKTLERMQASDSSARDaDQSTSDSD--EDILAQLMKAM 217
                 33356888888888888866555555666666666..77777776654 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.4
     RsbRD_N  44 lldallaalaseqldleseeeeelrealdelsrsRa 79 
                 +++++++  ++++   +s+e++  r++++e ++++ 
  KKY20676.1 284 IVKEIVDKFEEKT-YDDSNEKD--RAFVWEKMQKMQ 316
                 3334443333222.23444444..555555555555 PP

>> KIX_2  KIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.85   2.5e+03      14      48 ..      81     121 ..      72     123 .. 0.51
   2 ?   -2.0   0.1       1.2   3.7e+03      53      78 ..     170     195 ..     166     202 .. 0.71
   3 ?    9.3   0.6   0.00036       1.1      39      72 ..     285     316 ..     264     320 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.85
       KIX_2  14 qkivnkiletLkkh.....lpvsg.peglnelkkiAvrFEe 48 
                 +++v ++ + + k+      p s+ +e+++e++ + ++ Ee
  KKY20676.1  81 AEFVAQLQAEFEKTmanlgSPPSDaKEQASEITGMGKEIEE 121
                 55555544444443122223334457777777776666665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.2
       KIX_2  53 kAtskedYlrkislKmlqmetksqna 78 
                 +++sk ++ ++i++ ++ m+ ++++a
  KKY20676.1 170 ASESKGSFDETIRKTLERMQASDSSA 195
                 56777777777777777777776665 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00036
       KIX_2  39 lkkiAvrFEekiFskAtskedYlrkislKmlqme 72 
                 +k+i  +FEek++  ++ k+     + +Km++m+
  KKY20676.1 285 VKEIVDKFEEKTYDDSNEKDR--AFVWEKMQKMQ 316
                 6899*************9974..55666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1167  (0.0650901); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 2234.63
//
Query:       KKY20677.1  [L=594]
Description: hypothetical protein UCRPC4_g04144 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.3   0.6       0.27   11.3   0.6    1.5  1  zf-BED    BED zinc finger
        0.6   10.3   7.5        1.2    9.3   7.5    1.5  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> zf-BED  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.6     3e-05      0.27      13      44 .]      24      54 ..       9      54 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3e-05
                GSS--EETTTTEE----SSTHHHHHHHHHS-H CS
      zf-BED 13 keqkavCryCgkilsrgggttnLkrHLrrkHp 44
                 +   +C+ Cg+ +  g  +  L +HL +k+p
  KKY20677.1 24 NRYQHTCKACGEDFPKG-RIDSLQNHLTKKCP 54
                566779**********9.*************8 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   7.5   0.00014       1.2       2      26 ..     421     444 ..     420     456 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00014
                 S-HHHHHCT---STSSSS-HHHHHC CS
     Zn_clus   2 aCdnCrkkKvKCdakkPaCsnCkkl 26 
                 aC +Cr  +  C+ + P C+ C+ +
  KKY20677.1 421 ACLRCRMLRKPCSLESP-CATCRNV 444
                 9****************.****976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 4035.74
//
Query:       KKY20678.1  [L=240]
Description: putative short-chain dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-42  143.7   0.0    7.4e-42  143.5   0.0    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    9.5e-35  119.8   0.1    1.1e-34  119.6   0.1    1.0  1  adh_short     short chain dehydrogenase
    1.3e-09   38.2   0.1    1.9e-09   37.7   0.1    1.2  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.5   0.0   1.2e-45   7.4e-42       5     224 ..      16     238 ..      12     240 .] 0.93

  Alignments for each domain:
  == domain 1  score: 143.5 bits;  conditional E-value: 1.2e-45
                   SHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE...E....EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   5 gIGraiAkalaeeGaevvltdlneeakkrveelaeelgae...v....lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94 
                    +G+ iA  +a+eG +++l++ + ++k+ ++ela++l+++   +    +  D t++++v al++ v ++f++lDi++n +g++ k  +p++e+s++e
    KKY20678.1  16 NLGASIATIFAAEGSHLALHYNSASSKDVTAELAQSLSKKhpsItvkiYSGDLTSTKTVGALFSSVLQDFNTLDIVINTVGMVLK--KPLAEISEAE 110
                   689*********************************996645525588*************************************..********** PP

                   HHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHH CS
  adh_short_C2  95 fdraldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdellee 191
                   +d+++++n +++f +a++a+++++egg+i+n+        +  y+ y+ +Ka +e +t+ l +el +k+i vNav+pgp++T+     + ++e  + 
    KKY20678.1 111 YDKMFNINSKAAFFIAQEAAKHVNEGGKIINTVTSLLAAFTGFYTSYQGSKAPVEWFTKGLSKELMEKRISVNAVAPGPMDTPFFYPQE-SPEAVAF 206
                   *******************************966656688999*****************************************98775.89999** PP

                   HHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--S CS
  adh_short_C2 192 learaplgrlgtpeevaeaalfLasdeasyitG 224
                   ++++a  grl+++e++a +  fL+ +  s+itG
    KKY20678.1 207 HKSQALDGRLTKVEDIAPIFKFLCTEG-SWITG 238
                   ************************976.89998 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   0.1   1.8e-38   1.1e-34       1     189 [.       6     197 ..       6     203 .. 0.90

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 1.8e-38
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE...EESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGG CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv...vdrseekleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfs 94 
                 kv l+tG+++ +G  ia  +a+eG ++++    ++s++  +e+a++l ++  + ++ ++++D+t+ + v al++ + +++ +ld+++n +G+  ++p +
  KKY20678.1   6 KVTLITGGGKNLGASIATIFAAEGSHLALhynSASSKDVTAELAQSLSKKhpSITVKIYSGDLTSTKTVGALFSSVLQDFNTLDIVINTVGMVLKKPLA 104
                 799************************99633455666778888888888888889******************************************* PP

                 GCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short  95 elseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 e+se+e+++++++N +++f ++++++++   +++G+I+n+           +++Y  sKa v+ +t+ l+kel +++i+vnavaPG++dT++  +
  KKY20678.1 105 EISEAEYDKMFNINSKAAFFIAQEAAKH--VNEGGKIINTVTSLLAAFTGFYTSYQGSKAPVEWFTKGLSKELMEKRISVNAVAPGPMDTPFFYP 197
                 ****************************..379*****965555556667899*************************************98755 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.1   3.2e-13   1.9e-09       3     110 ..       8     116 ..       7     150 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 3.2e-13
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT..T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal..gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkllee 99 
                  litGG  +LG ++a+  a++g +hl+l   sa++++  ++l ++l+++   ++v++++ D+++ + v al++++ ++++++  vi++ g++ +k+l+e
  KKY20678.1   8 TLITGGGKNLGASIATIFAAEG-SHLALHYNSASSKDVTAELAQSLSKKhpSITVKIYSGDLTSTKTVGALFSSVLQDFNTLDIVINTVGMVLKKPLAE 105
                 59******************99.4777777777788888899999999866789********************************************* PP

                 --HHHHHHHHT CS
          KR 100 mtaedleqvla 110
                  ++++++++++
  KKY20678.1 106 ISEAEYDKMFN 116
                 *******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1712.70
//
Query:       KKY20679.1  [L=209]
Description: hypothetical protein UCRPC4_g04146 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-07   29.8   0.0    3.1e-07   29.5   0.0    1.0  1  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   1.7e-11   3.1e-07      24     164 ..      54     185 ..      31     197 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1.7e-11
  Fungal_trans_2  24 frkvllplalsnkallhallalsafhlqskgpkds.lereakrykslalkelqealaelsstlsrnekykdiLaaiLllcsieissgdvsdwrvh 117
                      r+  +p+ l+++ +++ ++ +sa h + ++++ s +  +++++k++al  l+ a++  +   +     + i+aa   + s+e + g++ + + h
      KKY20679.1  54 LRSKWFPVVLHDPLIFKVIVLFSASHYAIRFNQVSqYAVTILSFKQQALAALNAAISCSDGPVD-----DRIIAAAGKMASYEAIFGSEAQYHAH 143
                     5666799***********************999999999*************************.....************************** PP

  Fungal_trans_2 118 Leaatsliksrggskasssslsskarfllrifayldilssttlgrgp 164
                     + ++++++  rgg      s      fl r+++++d  s++ l++++
      KKY20679.1 144 MGGVEKMLDGRGGI-----SALGLDGFLGRLLLFIDSNSAFLLKTRL 185
                     **************.....5566778999999999999998888433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1493.43
//
Query:       KKY20680.1  [L=325]
Description: hypothetical protein UCRPC4_g04147 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0011   17.9   0.1      0.002   17.0   0.1    1.4  1  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.1e-07     0.002      20     146 ..       8     129 ..       1     164 [. 0.77

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.1e-07
  Fungal_trans_2  20 ssnpfrkvllplalsnkallhallalsafhlqskgpkds.....lereakrykslalkelqealaelsstlsrnekykdiLaaiLllcsieissg 109
                     s++ +  v+ +  +  + + ha+ a+s + ++  +++          +a +++ +a+k+l +  a +++++          a+ +ll  +e ++g
      KKY20680.1   8 SKEFWTIVVPQASWVYPQVRHAMTAISLTDQHLASGETNfdtelRVPKASYHYGQAIKGLMDDNACDKACMM---------ATAMLLFTFEHING 93 
                     456677777778889999*********9999655555555888777999999*******9888666666655.........999*********** PP

  Fungal_trans_2 110 dvsdwrvhLeaatsliksrggskasssslsskarfll 146
                     d  + + h++aa ++ ++++   +   +   + r   
      KKY20680.1  94 DYNSSGLHFTAAVKIANTLQQD-KRPARTGDTSRIVN 129
                     **************99999998.33333333344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 1956.84
//
Query:       KKY20681.1  [L=322]
Description: putative 6-phosphogluconate dehydrogenase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-29  103.1   0.1    2.5e-29  102.5   0.1    1.3  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
      1e-09   38.7   0.0    2.1e-09   37.6   0.0    1.5  1  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut
     0.0036   17.3   0.0     0.0059   16.7   0.0    1.3  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
     0.0052   16.2   0.0     0.0092   15.4   0.0    1.4  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
  ------ inclusion threshold ------
      0.045   14.3   0.0       0.12   12.9   0.0    1.8  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
        0.1   12.3   0.0       0.22   11.3   0.0    1.7  1  FMN_red         NADPH-dependent FMN reductase
       0.17   10.8   0.1       0.26   10.3   0.1    1.3  1  PDH             Prephenate dehydrogenase


Domain annotation for each model (and alignments):
>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.1   9.7e-33   2.5e-29       1     158 []       7     171 ..       7     171 .. 0.92

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 9.7e-33
                    EEEEE--SHHHHHHHHHH.....HHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--..TT-EEEE- CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnl.....lkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdeviegllealk..kgdilidg 89 
                    +ig+ GlG MG++ma+nl     + a+  ++ ynrt ++  +l + ga +aes  +lv++ d+++tmv +++  +e++++ ++ +k  ++++++d+
     KKY20681.1   7 QIGWYGLGSMGRPMAENLqkhltKTAEPALIYYNRTMSSGATLTSLGAMPAESFTDLVKESDIIFTMVANDSILEELVTQAVQVVKglSNKVFVDC 102
                    69****************5554445667789*************************************************55555322799***** PP

                    S---HHHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHH.HHHHHEEEEEEE-E CS
  NAD_binding_2  90 stsspedtrelakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkp.vleaigakvthviG 158
                    st++p++ ++l+++l+++ + ++ aPV GG   A +G+L + +GG+++  e+vk  +l+ +g+k++++ G
     KKY20681.1 103 STVHPSTIERLSEKLSQHSAILVSAPVFGGPSIAVTGKLVFALGGPDAGCEAVKGyILDVMGRKIIRC-G 171
                    *****************************************************9769******99977.5 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   8.4e-13   2.1e-09       5     120 ..     179     293 ..     176     295 .. 0.88

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 8.4e-13
  NAD_binding_11   5 avKlvnnlllainlaaasEalvlaekaGldpekvlevinassgrsna.lenklpqrvlsrdfdpgFaldlmlKDlglalelareagaplpllala 98 
                       K+  n+++   + a++Ea v+ae+ Gl   ++ e i ++ g     l++ +     +   +pgF ++l +KD + al+  re +++lp l+la
      KKY20681.1 179 MLKIGGNIVTLNLMEAVGEAQVFAEQTGLGTTAMEELIAEAFGPVAGgLTSGIY--APTLGTRPGFGVSLSIKDADHALAITRERKFKLPGLELA 271
                     578888999999******************************987554333333..2345679******************************** PP

  NAD_binding_11  99 eqlyaaaaaegggdaDhsaivr 120
                     ++ +aaa++ gg+  D s+++ 
      KKY20681.1 272 KENMAAAREYGGECLDASSMYG 293
                     ******************9986 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.3e-06    0.0059      23     118 ..      20     111 ..       5     126 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.3e-06
                   HHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSSSS-SB-HHHHHCCHHH.S....EEEEE--S..S- CS
  Shikimate_DH  23 maelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisataseepilekeeveealkkrk..kplllvDiav..PR 115
                   mae + khL +    +++  NRt++  ++l + l+     a++ e+ ++l++e+d++++ +a  + il +e v++a++  k  +++++vD +   P 
    KKY20681.1  20 MAENLQKHLTKTAEPALIYYNRTMSSGATLTS-LG-----AMPAESFTDLVKESDIIFTMVANDS-IL-EELVTQAVQVVKglSNKVFVDCSTvhPS 108
                   56677778887777789999**********54.42.....56888889999*******9887655.44.5566666666666778899998843366 PP

                   SB- CS
  Shikimate_DH 116 dve 118
                    +e
    KKY20681.1 109 TIE 111
                   665 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.6e-06    0.0092      37     101 ..       6      76 ..       2      93 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.6e-06
                   SEEEEES-SHHHHHHHHHHH.....HTT-EEEEESSSHHHHHCHHHHTC.EECSHHHHHHH-SEEEE-S-- CS
  2-Hacid_dh_C  37 ktvGiiGlGrIGqavakrlk.....afgmkviaydrskkkeeeeeelgv.elvsleellaesDivslhlpl 101
                    ++G  GlG++G+ +a+ l+       +  +i+y+r+ ++ ++  +lg+   +s+ +l++esDi++ ++  
    KKY20681.1   6 TQIGWYGLGSMGRPMAENLQkhltkTAEPALIYYNRTMSSGATLTSLGAmPAESFTDLVKESDIIFTMVAN 76 
                   57999***********988731111356679********99999999996777************988865 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.8e-05      0.12       2      94 ..       8     102 ..       7     105 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.8e-05
                    EEEETTSHHHHHHHHHHHHTTS.-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHH.HHHHHHHC..GHHHHTTSEEEE CS
  F420_oxidored   2 igiiGaGnmgealasgllaaga.qpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkped.veevlsel..akdalkgklvis 93 
                    ig  G G+mg+ +a++l+++ + +++  ++  +r+ ++ + l  +lg+   + +  ++++e+d+++  v     +ee+++++   ++ l++k++++
     KKY20681.1   8 IGWYGLGSMGRPMAENLQKHLTkTAEPALIYYNRTMSSGATL-TSLGAMPAE-SFTDLVKESDIIFTMVANDSiLEELVTQAvqVVKGLSNKVFVD 101
                    56669**************98886677777789999988777.556666666.79***********999775514666666666667777888887 PP

                    E CS
  F420_oxidored  94 v 94 
                    +
     KKY20681.1 102 C 102
                    7 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.4e-05      0.22      39      85 ..      91     132 ..      14     141 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.4e-05
                 TTTS..--..---HCHGHTCGGSHHHHHHHHHHHH-SCEEEEEEECTT CS
     FMN_red  39 ladl.ilpcalcdkdlesegqtsddvaellekiaaadaliivtPeYng 85 
                 +++l ++   ++d+ +    +++  +++l+ek+ +++a++++ P++ g
  KKY20681.1  91 VKGLsNKV--FVDCST----VHPSTIERLSEKLSQHSAILVSAPVFGG 132
                 33333344..666666....89***********************976 PP

>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1    0.0001      0.26      36     108 ..      58     132 ..      21     143 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0001
                 EES-GGGGCCGSEEEE-S-GGGHHHHHHHHHHHS-T...T-EEEE--S--CHHHHHHHHHCC..GCEEEEEES--- CS
         PDH  36 atddieavkeadivvlavPvevilevlkelaphlke...dalitDvgsvKekvvreleellkegksfvgghPmaGt 108
                      + vke di++  v  + ile l   a ++ +   + + +D + v  + ++ l+e l+++  +  ++P++G+
  KKY20681.1  58 ESF-TDLVKESDIIFTMVANDSILEELVTQAVQVVKglsNKVFVDCSTVHPSTIERLSEKLSQHSAILVSAPVFGG 132
                 333.6899*******99999999876655555444312156899*******************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 2080.65
//
Query:       KKY20682.1  [L=384]
Description: putative protein disulfide-isomerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.4e-21   74.5   0.0    4.6e-19   69.0   0.0    2.1  2  Thioredoxin_6  Thioredoxin-like domain
      2e-16   59.8   0.0    3.9e-13   49.3   0.0    2.3  2  Thioredoxin    Thioredoxin
  ------ inclusion threshold ------
      0.022   14.1   0.0       0.25   10.7   0.0    2.2  2  OST3_OST6      OST3 / OST6 family, transporter family
      0.038   13.9   0.2       0.54   10.1   0.0    2.0  2  Jun            Jun-like transcription factor


Domain annotation for each model (and alignments):
>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.014        63      99     158 ..      41      97 ..      32     102 .. 0.79
   2 !   69.0   0.0     1e-22   4.6e-19       5     182 ..     174     358 ..     170     359 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.014
                    EEEEE-TTSTTHHHHHHHHHHHHHHTTTT-EEEEEETTGGHHHHHHTT--GGG-SEEEEE CS
  Thioredoxin_6  99 lllflkkddeeteklkkaiekvakefkdkinfaladaksfkrpleylglsssdlPviviv 158
                    ++++++ ++   + l  +  ++ak+ +d + f+ +d++  + ++ + g++  + P+i+++
     KKY20682.1  41 VAFISP-HTAPCQALAPEWASAAKQAPDTVPFVSIDCTMEPLFCAEHGVR--SYPAIRLF 97 
                    444444.455666666677889****************999999999999..88998876 PP

  == domain 2  score: 69.0 bits;  conditional E-value: 1e-22
                    TSTHHHHHHHHTTT-T.TSEEEEE--HHHHHH...TT--SSEEEEEETTTTEEEEEETH.T-.-HHHHHHHHHHH---SEEE-SHHHHHHHHTSS- CS
  Thioredoxin_6   5 dkeeseiFekvakelkgdvrfgvtkskevadk...lgvkepavllfrkfdeekvkydge.ki.tvddlkkfieknslplvreltpenaeelfeegl 95 
                    + e   +F k a++ ++d+ f+++ ++  +++    +   pav+ +++f +e++ ++ + ++  ++ +++fi+    +l++e+t  + + + ++++
     KKY20682.1 174 NREVQSTFVKLASRHRQDHIFAISEDSTPVQEqlgSNMVQPAVIAYNPFLNEQTILPISpSTpLYTQIEHFIQASTTSLIGEFTRRTENMYLQSRK 269
                    5667789******************999777775555555******************9944499******************************5 PP

                    -EEEEEEE-TTSTTHHHHHHHHHHHHHHTTTT-EEEEEETTGGHHHHHHTT--GGG-SEEEEEESSSS-EEEET....TSS--HHHHHHHH CS
  Thioredoxin_6  96 ppllllflkkddeeteklkkaiekvakefkdkinfaladaksfkrpleylglsssdlPvivivdsashkykypp....kdefspeklkeFl 182
                      l++lf+  +d +  +l+++++ +ak+++d++nfa++da++++++   lgl++++ P + +++s +++++ +p     ++  +e+++eFl
     KKY20682.1 270 L-LIYLFTS-TDGDRLHLLRTFHPLAKKYSDYVNFATIDAMEYGHMTASLGLRKEKFPSLTVYSSWKSQVFPYPgevlMGDDVVEQVEEFL 358
                    5.7777773.5556779***********************************************988886444444555555667777775 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   8.7e-17   3.9e-13      12      82 ..      31     100 ..      22     117 .. 0.88
   2 !    8.3   0.0   0.00049       2.2      34      83 ..     283     334 ..     255     355 .. 0.78

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 8.7e-17
                  HHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETT CS
  Thioredoxin  12 eevakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkng 82 
                  + v   ++l +v F +p  ++C+alaPe++++a++  d+v ++ +d++ ++  +++++v+++P+++lf   
   KKY20682.1  31 SIVGG-NDLTVVAFISPHTAPCQALAPEWASAAKQAPDTVPFVSIDCTMEPLFCAEHGVRSYPAIRLFSGL 100
                  44555.8999*********************************************************9865 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00049
                  HCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-S..SSSEEEEEETTE CS
  Thioredoxin  34 kalaPeleklaeelkdkvklakvdvdenedlakkyeve..giPtlklfkngk 83 
                   +l  +++ la++++d v +a +d+ e  ++ + ++ +   +P l ++ + k
   KKY20682.1 283 LHLLRTFHPLAKKYSDYVNFATIDAMEYGHMTASLGLRkeKFPSLTVYSSWK 334
                  566678999**********************999998633699999987655 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   5.6e-05      0.25      57     134 ..      52     133 ..      41     144 .. 0.74
   2 ?    1.1   0.0     0.044     2e+02      68     107 ..     294     335 ..     221     365 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.6e-05
   OST3_OST6  57 elvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfpp.....kkgpkeskkkdtydfsrggfdaealakfis 134
                 +++a  w +  k+  +++ F+++d    + + ++ g++s P + lf+      ++g+ + kk dt++  rg  +a ++ +f+ 
  KKY20682.1  52 QALAPEWASAAKQAPDTVPFVSIDCTMEPLFCAEHGVRSYPAIRLFSGlesvgNGGQPQLKKIDTIRY-RGPRRASSIGSFVV 133
                 45666666666666788******************************965554222223445555554.45778888888875 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.044
   OST3_OST6  68 kskskklfFakvdfdegkdvFqklgln..saPhlllfppkkg 107
                 k+ s+ + Fa++d +e   + ++lgl+  + P l ++++ k+
  KKY20682.1 294 KKYSDYVNFATIDAMEYGHMTASLGLRkeKFPSLTVYSSWKS 335
                 67889999********99999999985226788888877654 PP

>> Jun  Jun-like transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1     0.054   2.4e+02     187     224 ..      41      73 ..      18      77 .. 0.64
   2 ?   10.1   0.0   0.00012      0.54      97     175 ..     166     252 ..     159     271 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.054
                 XXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXX CS
         Jun 187 vsyaaepapfasqlavqhpagarlqalkeEPqtVPevp 224
                 v++    +p  ++++ q  a++  +a k+ P tVP v+
  KKY20682.1  41 VAFI---SP--HTAPCQALAPEWASAAKQAPDTVPFVS 73 
                 4444...22..234566666777799*********876 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00012
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXXX CS
         Jun  97 ypknvtdEqegFAeGFVkALadLHkqnqlaavtaaaaaaaasg.gaaaapaalaagsa........lasepPvYanLssfnpaaasss 175
                 y++   d + +    FVk La  H+q+++ a + +++  + +  + ++ pa +a ++         + + +P Y+++  f +a+++s 
  KKY20682.1 166 YQRGSPDSNREVQSTFVK-LASRHRQDHIFAISEDSTPVQEQLgSNMVQPAVIAYNPFlneqtilpISPSTPLYTQIEHFIQASTTSL 252
                 555566677777788999.99*******988888888777766578899999999996678899999999***********9977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 2425.05
//
Query:       KKY20683.1  [L=1028]
Description: putative transcription elongation complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-57  194.4   4.9    4.8e-57  192.4   0.0    2.7  2  SPT16            FACT complex subunit (SPT16/CDC68)
    2.4e-51  173.7   0.4    1.6e-50  171.0   0.0    2.6  2  FACT-Spt16_Nlob  FACT complex subunit SPT16 N-terminal lobe d
      9e-25   87.6   0.0    1.5e-24   86.8   0.0    1.4  1  Peptidase_M24    Metallopeptidase family M24
    9.4e-14   51.6   0.0    2.6e-13   50.2   0.0    1.8  1  Rtt106           Histone chaperone Rttp106-like
  ------ inclusion threshold ------
          1    8.7   3.6        2.1    7.7   3.6    1.4  1  DUF908           Domain of Unknown Function (DUF908)


Domain annotation for each model (and alignments):
>> SPT16  FACT complex subunit (SPT16/CDC68)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   2.4     0.084     3e+02      85     118 ..     465     500 ..     426     510 .. 0.78
   2 !  192.4   0.0   1.3e-60   4.8e-57       1     151 []     543     693 ..     543     693 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.084
       SPT16  85 reik..elkkkvkkreaekkekedlveqekLilsks 118
                 ++ik   l+++ kk+e+e+ e++   +q++L  +k+
  KKY20683.1 465 SNIKssRLRNTTKKQEDEDSENKRREHQKELARKKQ 500
                 444411578888889999999999999999988875 PP

  == domain 2  score: 192.4 bits;  conditional E-value: 1.3e-60
       SPT16   1 iyvdkkketillPifGiavPFhistiknvskseegdytylrinFnvpgsavgkkeealfknpeaifikeltfrskdekklqevfreikelkkkvkkrea 99 
                 ++vd k+ t+llPi+G++vPFhi+tiknvs+s+egdyt+lr+nF +pg+ vg+k++++f+ p+a+f+++lt+rskd++++ +v  +i+el+k++ +re+
  KKY20683.1 543 VIVDPKAMTVLLPIMGRPVPFHINTIKNVSSSDEGDYTHLRFNFLSPGQGVGRKDDQPFEDPSAHFVRSLTIRSKDRNRMADVSDQINELRKQAVRREQ 641
                 58*********************************************************99************************************** PP

       SPT16 100 ekkekedlveqekLilskskrkprLkdlyirpniegkklaGtleaheNGlRy 151
                 ekke+ed+veq+kLi+ +++r+ rL+d+y+rp+ +gk++ G++e+h+NGlRy
  KKY20683.1 642 EKKEMEDVVEQDKLIEVRNRRPLRLDDVYLRPAQDGKRMPGSVEIHQNGLRY 693
                 ***************************************************9 PP

>> FACT-Spt16_Nlob  FACT complex subunit SPT16 N-terminal lobe domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.0   0.0   4.6e-54   1.6e-50       1     160 [.       7     166 ..       7     167 .. 0.96
   2 ?   -2.2   0.8      0.88   3.2e+03      71     119 ..     460     507 ..     456     527 .. 0.69

  Alignments for each domain:
  == domain 1  score: 171.0 bits;  conditional E-value: 4.6e-54
                      --HHHHHHHHHHHHHHHHSHHHHH...STT-SEEEEEE-S--TT----HHHHHHHHHHSS--SSEEEEEESSEEEEEEEHHHHHTTGGGCTSTT CS
  FACT-Spt16_Nlob   1 idkkafkkRlkklysawkeeeedk...fssvdallvvlGksdeenpykKstalqtWLlGyefpdtlilltkkkiviltskkKaklLeplkekke 91 
                      idk  f  Rl+++ys+wk ++      f++++++++++Gk++e+++y K +al++WLlGyefp+tl+++ +++++++t++kKa++Leplk +k 
       KKY20683.1   7 IDKGVFADRLSHFYSSWKADKRAGdavFNGASSVVILCGKAEESSSYMKHNALHFWLLGYEFPATLMVFSPDTLYVVTTQKKANHLEPLKGGK- 99 
                      89****************555444579*****************************************************************9. PP

                      -.SSEEEEEEE-S-HHHHHHHHHHHHHHHHTTTSEEEE-TT----SHHHHHHHHHHCCCGGG.EEEE-HH CS
  FACT-Spt16_Nlob  92 eekvevellvreKdadenkknfeklieaikeagkkvGvlaKdkseGkfveewkkalkeakke.eevDvsa 160
                         ++ve lv +Kd+++++k+fek+++ ik+ag kvG+laK +++G+f+++w+ka+ + +k+ eevD+ +
       KKY20683.1 100 ---IPVETLVVTKDPESKTKAFEKCLDVIKSAGPKVGILAKPEPTGPFADDWRKAFGDISKDiEEVDIGS 166
                      ...****************************************************************975 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.88
                      EEEEEEHHHHHTTGGGCTSTT-.SSEEEEEEE-S-HHHHHHHHHHHHHH CS
  FACT-Spt16_Nlob  71 iviltskkKaklLeplkekkeeekvevellvreKdadenkknfekliea 119
                        i ts+ K + L++ ++k+e+e+ e +   ++K + + kk+ e l + 
       KKY20683.1 460 ASIATSNIKSSRLRNTTKKQEDEDSENKRREHQK-ELARKKQAEGLARF 507
                      5688999999999999999988866666666666.44555555555544 PP

>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0   4.3e-28   1.5e-24       2     207 ..     183     417 ..     182     419 .. 0.83

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 4.3e-28
                    HHHHHHHHHHHHHHHHHHHHHT.......TC..BHHHHHHHHHHHHHHHTT................TCEESSSSEEEEGGGGGSTTT.BCSSSB- CS
  Peptidase_M24   2 lirkaariasaaleavleaikp.......gv..terelaaeieattlkrhg................arglafppivasgenaavlhy.tpndrvl 71 
                     +r a+r++s  ++    +i++       g   ++  la++++++  ++ g                + ++a+ p+++sg + ++    +p+d  l
     KKY20683.1 183 SMRTAGRACSGLINDY--WIEEmsqildsGKtrSHSALAKKLDEK--IDDGkfftklskipsdfdlqQLEWAYGPVIQSGGKFDLKLSaQPDDGNL 274
                    5899999999999988..666533344443323688888888877..555558888889999999999****************7555599***** PP

                    -TTEEEEEEEEEEETTEEEEEEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHT..TBCCGBSSCSEEEESSSSSEEE CS
  Peptidase_M24  72 kegdlvlidagaeydgyasDitrTvlvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesa..glakffphglGHgvGlevhdeg 165
                    ++   +   +g +y+ y++ ++rT+lv+ +++ q  +y+++++++e ++k++k G+ +++++++a  +++s+   ++k+f + lG g+G+e+ d+ 
     KKY20683.1 275 HA-GTIFAGIGLRYKTYCAAVGRTYLVD-PDKTQSSNYKLLQAVHELVLKEIKDGAVIKDVYNKAVGLIRSKkpDMEKYFVKTLGAGIGIELKDSN 368
                    *9.68999*******************6.8888999**********************************875657999**************995 PP

                    EEESSSTTCSSB--TTBEEEEEEEEEEET.........TTEEEEEBEEEEE CS
  Peptidase_M24 166 psvsresndgrkleeGmvftiEpgiyfap.........geggvriedtvlv 207
                     +++  ++++r+l++Gm++ i +g+  +p         ++++  i dt+ v
     KKY20683.1 369 LNLN--GKNTRQLKDGMTLYITTGFTDVPnsdtkdkksQVYTLGITDTIRV 417
                    5566..678*****************7775555544433389999999977 PP

>> Rtt106  Histone chaperone Rttp106-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   7.2e-17   2.6e-13       3      88 ..     819     904 ..     817     905 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 7.2e-17
      Rtt106   3 VkasrkakeGlLyflekgllfgfkkPllfiplediesvsfeRvsvtsrtfdlvvelkk...eeveFsmidqeelegidefvkskgikik 88 
                 V+++   +++l+ + +++l+ +++ P+++i+l++ie +++eR+++  ++fdlv+++k+   ++ ++++i+ e+l++++++++ ++i ++
  KKY20683.1 819 VPHR---SNVLMAPATEALVQLTEPPFTVITLSEIEVAHLERIQFGLKNFDLVFVFKDfnrAPAHINTIPVESLDNVKDWLDGCDIPYT 904
                 6666...889999*******************************************888889************************986 PP

>> DUF908  Domain of Unknown Function (DUF908)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.6   0.00058       2.1      92     212 ..     388     505 ..     363     513 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00058
      DUF908  92 Aqpfpktpvsdssakaasekkastteyaldlvslakedskv.......lpsewgdvkvtYYkkssseeqkaesksskeeaseslissspstPtplrrss 183
                   +f+  p sd++        +++++y+l+++++++  ++          s+++++++ +  ++++e++++++k+++++as     +s+    +lr+++
  KKY20683.1 388 TTGFTDVPNSDTK-------DKKSQVYTLGITDTIRVARSEaivftkeADSDLDNIEFFFNDQEEEEPAPKKEKKPSKAASIA---TSNIKSSRLRNTT 476
                 4455555544433.......5577789999999999888888999999999*******9999999988777666655554422...2223333455555 PP

      DUF908 184 klgktssspsspaktstpskaaksqeglk 212
                 k+++ ++s+++  +++++ + +k++egl+
  KKY20683.1 477 KKQEDEDSENKRREHQKELARKKQAEGLA 505
                 55544456666666666666677777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1028 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1739  (0.0969937); expected 358.6 (0.02)
Passed bias filter:                      651  (0.0363099); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.08u 0.33s 00:00:01.41 Elapsed: 00:00:00.56
# Mc/sec: 5531.90
//
Query:       KKY20684.1  [L=403]
Description: putative mitochondrial carrier [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-18   65.7   0.1    2.5e-11   43.3   0.0    2.7  2  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   1.4e-15   2.5e-11       4      91 ..     149     234 ..     146     239 .. 0.92
   2 !   19.5   0.0   3.9e-08   0.00071       9      93 ..     273     383 ..     266     386 .. 0.80

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 1.4e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkr 91 
                 s+++++ aG +aga+++lv++Pld + +r+  +    +k  +++i++  ++ + e G rg + G++ +ll+ ++  ++ f+++e +k 
  KKY20684.1 149 SPTSTFTAGTAAGALQSLVAAPLDALQVRFDRSDAIDNK--YKNIVSYSRQKLAEIGYRGIFAGWSLSLLKDSIGCGVFFTTFEWVKA 234
                 67889*************************998888766..556*****************************************996 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 3.9e-08
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH......CCCSSTTTSCSS.........HHHHHHHHHHHHHHHG.................GGTTHHHHHHHH CS
   Mito_carr   9 llaGglagavatlvttPldvvKtrlqt......qkksskksksaa.........ildvlkkiykeeGlrg.................lyrGllpnllrv 75 
                 l aG  a + ++++ +Pl ++ t          q      ++++a           +++ ++++e + ++                 lyrG++ n +r+
  KKY20684.1 273 LGAGISATLSQAFIQYPLSTLQTLHYErlehidQ------ATKSAitrrdvlrtYYHAYETTLREAQTKAhkttnlishqrmnliqwLYRGFWWNTIRQ 365
                 5689999999999999999999976663333322......22222344567888888888888888888889999999999999999************ PP

                 HHHHHHHHHHHHHHHHHH CS
   Mito_carr  76 apasalkfvlyetlkrll 93 
                 +p++a+ +v++e ++r +
  KKY20684.1 366 VPSTAAGLVIFELVRRKY 383
                 **************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.50
# Mc/sec: 2411.50
//
Query:       KKY20685.1  [L=419]
Description: putative lem3 cdc50 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-98  330.0   0.6    1.7e-98  329.6   0.6    1.2  1  CDC50         LEM3 (ligand-effect modulator 3) family / CDC50
  ------ inclusion threshold ------
       0.15   11.1   0.0       0.24   10.4   0.0    1.2  1  SAM_decarbox  Adenosylmethionine decarboxylase


Domain annotation for each model (and alignments):
>> CDC50  LEM3 (ligand-effect modulator 3) family / CDC50 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.6   0.6  1.9e-102   1.7e-98       1     280 []      70     389 ..      70     389 .. 0.91

  Alignments for each domain:
  == domain 1  score: 329.6 bits;  conditional E-value: 1.9e-102
       CDC50   1 llvasksvkeleidYtsecataaesek..........................................easkekktCtvqftvpedlkapvyvyYeLt 57 
                 ll+as++v+el+idYt +c+t+a+  +                                          + + e++ Ct+qf++p+d+ +pv++yY+Lt
  KKY20685.1  70 LLWASAKVQELSIDYT-HCTTKAPLLStasdddsaavipskyvstqfkysnttqqamwyrsvsnetppySVELETNVCTLQFQIPNDIGPPVLLYYRLT 167
                 689*************.**988887668999*************************************999999************************* PP

       CDC50  58 nfyQnhrryvkSrddsqlkgkaks.s.lksssssdCepletakekkekkkiiyPCGliAnslFNDtfslvee.sssk..ltkvnltkkgIawksdkekk 151
                 nfyQnhrryvkS+d +ql gka s s +k   +sdC+ple ++++     ++yPCGliAns+FNDtf+   + + ++  + + ++t+kgIaw++dk + 
  KKY20685.1 168 NFYQNHRRYVKSLDTDQLLGKALSnStIK---NSDCDPLEVNDDG----IAYYPCGLIANSIFNDTFHSPVDiTPTSgdNVTYPMTNKGIAWSHDK-NV 258
                 **********************6645444...358****876554....57****************55555333334456666************.89 PP

       CDC50 152 fknktkyealeevvkPpnWakk.pe....eteipelkenedfivWmrtAalptFrKlyrrindeedLkagtyevdiennfpvksFkGtKsivlsttswl 245
                 +k+ tky++ ++vv+Pp W+k+ p+    e++ip+l++ e+f++WmrtA+lptF+Kl+ r nd+e++ agty+++i + fpv++++GtKsi++st+s++
  KKY20685.1 259 YKK-TKYTN-DQVVPPPYWVKRyPNnytdENPIPDLSQYEEFQNWMRTAGLPTFSKLALR-NDNETMVAGTYQMRIFDYFPVNEYGGTKSILISTRSVM 354
                 995.88988.9********99994457789******************************.999*********************************** PP

       CDC50 246 GgknpflgiaYlvvGgiclvlaivflvthlikprk 280
                 Ggkn+flgiaY+v+Gg+c+vl+++f+v+hlikprk
  KKY20685.1 355 GGKNSFLGIAYVVIGGLCVVLGTLFTVAHLIKPRK 389
                 *********************************97 PP

>> SAM_decarbox  Adenosylmethionine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   2.6e-05      0.24     201     267 ..     168     237 ..     159     244 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 2.6e-05
                   GGBXSSXE..........HHHHHHHHHSHHHHSX..TSEEEEEEXSSBXEEEEEEETT.EEEEEEEEXXS CS
  SAM_decarbox 201 kFvkerks.keeedeghalgkevteksgldkilp..eaeidafaFepcGYSaNaiveeeayyTiHvTPee 267
                   +F+++++   ++ d+++ lgk++++++  ++ ++  e++ d  a+ pcG  aN+i ++++++ + +TP +
    KKY20685.1 168 NFYQNHRRyVKSLDTDQLLGKALSNSTIKNSDCDplEVNDDGIAYYPCGLIANSIFNDTFHSPVDITPTS 237
                   666555443334555555555555544433333345788899**************************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.52
# Mc/sec: 2431.23
//
Query:       KKY20686.1  [L=808]
Description: hypothetical protein UCRPC4_g04153 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 5574.62
//
Query:       KKY20687.1  [L=449]
Description: putative tubulin alpha chain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-67  227.1   0.0    3.5e-67  226.4   0.0    1.3  1  Tubulin    Tubulin/FtsZ family, GTPase domain
    6.6e-51  171.7   0.1    1.1e-50  171.0   0.1    1.4  1  Tubulin_C  Tubulin C-terminal domain
     0.0036   17.0   0.0     0.0091   15.7   0.0    1.6  2  Tubulin_3  Tubulin domain


Domain annotation for each model (and alignments):
>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.4   0.0   5.8e-71   3.5e-67       1     196 [.       3     213 ..       3     214 .. 0.99

  Alignments for each domain:
  == domain 1  score: 226.4 bits;  conditional E-value: 5.8e-71
                 EEEEEEEHHHHHHHHHHHHH...HHHCH................HHHT.....TTEEEEE....EEESBHHHHHTS-GS........EEEE--CCCCTT CS
     Tubulin   1 eiivigvGqcGnqignelwellakehgiqsdg............dslesfFsesgkveyiprsvaidtdpqvlneikags..elfnpnklllgkegagn 85 
                 eii ++vGq+G+qi+n++wel++ ehgiq+dg            + +++fF+e+g+++y+pr++ +d++p+v++e+++g+  +lf+p+++++gke+a+n
  KKY20687.1   3 EIISLNVGQAGCQIANSCWELYCLEHGIQPDGylteerkaqdpdQGFSTFFTETGSGKYVPRTIYCDLEPNVVDEVRTGTyrSLFHPEQMITGKEDASN 101
                 79******************************************9****************************************************** PP

                 C--TT-HHHHHHHHHHTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--.GG.G-HHHHHHHHHHHHHHHHT-SE CS
     Tubulin  86 ngaggypevgkeaaeeileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPs.efsevvvepynailalkelieesda 183
                 n+a+g+++vgke+++++l+++r+ +++c  lqgf++++s+gGGTGSG+g++++e+l+ +y k+ ++ ++v+P  ++s++vvepyn+il++++  e+sd+
  KKY20687.1 102 NYARGHYTVGKELIDQVLDKVRRVADSCAGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKCKLEFCVYPApSISSSVVEPYNSILTTHTTLEHSDC 200
                 *************************************************************************************************** PP

                 EEEEEHHHHHCCS CS
     Tubulin 184 vividNdaLlkil 196
                  +++dN+a+++i+
  KKY20687.1 201 SFMVDNEAIYDIC 213
                 ************9 PP

>> Tubulin_C  Tubulin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.0   0.1   1.9e-54   1.1e-50       1     125 [.     263     392 ..     263     393 .. 0.99

  Alignments for each domain:
  == domain 1  score: 171.0 bits;  conditional E-value: 1.9e-54
                 TTC-EEEEEEESSSCTTTTTCS-HHHHHHHHHTCSGGGBSSSTSTTTSSEEEEEEEEEESSSHHHHHHHHHHHHHTTTS-BSTTSTTTEEEEEEECECT CS
   Tubulin_C   1 PrlhFlltsyaPlvsaekaavektsvqdvtrallepknimvkvdprkgkylaiallirGdvepkevnkavqrikekkkaqfveWiptgikvalnkkspy 99 
                 Pr+hF+l++yaP++sa+kaa+e +svq++ +a++ep+n+mvk+dpr+gky+a++ll+rGdv+p++v++av+++k+k+++qfv+W+ptg+k+++++++p+
  KKY20687.1 263 PRIHFPLVAYAPIISASKAAHEANSVQEISTACFEPNNQMVKCDPRNGKYMATCLLYRGDVVPNDVHSAVATLKTKRTIQFVDWCPTGFKIGICYQPPQ 361
                 9************************************************************************************************** PP

                 -TTTS.....SCEEEEEEEEGGGHHHHHHHH CS
   Tubulin_C 100 vkkqs.....kvsvlmlaNttsiaelfkrll 125
                 ++++      +++v+ml+Ntt+iae+++ l+
  KKY20687.1 362 MVPNGdlakvNRAVCMLSNTTAIAEAWSALS 392
                 ****99**999****************9876 PP

>> Tubulin_3  Tubulin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.5e-06    0.0091      42     107 ..     107     166 ..      78     198 .. 0.78
   2 ?   -3.7   0.0       1.4   8.4e+03      32      49 ..     396     413 ..     384     437 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.5e-06
   Tubulin_3  42 dwsvGeeLfeeldkehdlldrdlrpfaeecdqlrglqvftgvddaWG.Gfaakylerlrdeygkksi 107
                 +++vG+eL ++      +ld+ +r  a+ c  l+g+ vf +     G Gf+a  +erl  +ygkk+ 
  KKY20687.1 107 HYTVGKELIDQ------VLDK-VRRVADSCAGLQGFLVFHSFGGGTGsGFGALLMERLSVDYGKKCK 166
                 45666666543......5665.899****************99887769***************984 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.4
   Tubulin_3  32 elnskllpfedwsvGeeL 49 
                 +l  +   f +w vGe +
  KKY20687.1 396 DLMYSKRAFVHWYVGEGM 413
                 444444555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2991.11
//
Query:       KKY20688.1  [L=1330]
Description: putative ef hand domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-28   97.7   0.0      2e-12   47.0   0.0    3.6  3  EF-hand_4       Cytoskeletal-regulatory complex EF hand
    5.3e-06   25.6   0.1     0.0011   18.4   0.1    3.4  3  EF-hand_1       EF hand
    6.4e-06   26.5   0.0     0.0037   17.7   0.1    3.4  2  EF-hand_7       EF-hand domain pair
    1.3e-05   25.0   0.0    2.5e-05   24.0   0.0    1.5  1  UBA             UBA/TS-N domain
     0.0012   19.4   7.2     0.0012   19.4   7.2    3.2  3  BST2            Bone marrow stromal antigen 2
     0.0038   17.0   0.3       0.46   10.4   0.1    2.9  2  EF-hand_8       EF-hand domain pair
  ------ inclusion threshold ------
      0.016   15.6  12.5        1.4    9.3   3.2    3.7  3  LPP             Lipoprotein leucine-zipper
      0.018   14.7  13.6      0.088   12.5   1.8    2.6  2  YkyA            Putative cell-wall binding lipoprotein
      0.026   13.4  27.6      0.045   12.6  13.9    2.1  2  Spc7            Spc7 kinetochore protein
       0.03   14.5  24.8       0.21   11.8   4.8    3.5  3  TMF_TATA_bd     TATA element modulatory factor 1 TATA binding
       0.08   12.5   0.9       0.19   11.3   0.0    2.2  1  EF-hand_5       EF hand
       0.15   12.1  14.6       0.41   10.7   1.5    2.5  2  DUF1664         Protein of unknown function (DUF1664)
       0.19   11.8   9.4        1.6    8.9   0.1    4.9  5  EF-hand_6       EF-hand domain
       0.27   11.0  20.2     0.0095   15.8   7.2    2.7  2  DUF724          Protein of unknown function (DUF724)
       0.49    9.4  20.4       0.73    8.9  20.4    1.1  1  AIP3            Actin interacting protein 3
       0.58    8.3  17.3       0.86    7.7  17.3    1.2  1  EzrA            Septation ring formation regulator, EzrA
        1.1    7.8  15.3        0.5    9.0   3.4    2.0  2  AAA_13          AAA domain
        1.2    9.4  10.1       0.11   12.6   5.1    1.8  1  DUF4047         Domain of unknown function (DUF4047)
        1.2    8.6  26.1        1.3    8.5   8.5    2.4  2  Filament        Intermediate filament protein
        1.5    8.9  29.8      0.058   13.5   6.1    2.9  3  ADIP            Afadin- and alpha -actinin-Binding
        1.6    7.2  18.7        3.2    6.2   3.7    2.1  2  FapA            Flagellar Assembly Protein A
        1.8    8.9  15.9       0.27   11.6   3.3    2.7  2  BLOC1_2         Biogenesis of lysosome-related organelles com
        2.7    6.5  19.1        8.1    4.9  19.1    1.8  1  Macoilin        Macoilin family
        3.5    6.6  27.8       0.38    9.8  11.1    2.2  2  Atg14           Vacuolar sorting 38 and autophagy-related sub
        4.4    6.7  28.6        5.8    6.3   1.6    2.3  2  Golgin_A5       Golgin subfamily A member 5
        5.7    7.1  37.5       0.14   12.4  13.5    3.1  2  ATG16           Autophagy protein 16 (ATG16)
          6    6.6  24.0        1.4    8.6   8.2    2.2  2  DUF4201         Domain of unknown function (DUF4201)
        6.2    6.8  22.4        1.4    9.0   9.6    2.5  2  Laminin_II      Laminin Domain II
        6.3    5.5  28.1        1.6    7.5  16.3    2.1  2  CALCOCO1        Calcium binding and coiled-coil domain (CALCO
        7.8    6.1  30.0         11    5.6  30.0    1.2  1  Lebercilin      Ciliary protein causing Leber congenital amau
        8.8    5.6  28.5        8.9    5.6  10.7    2.2  2  GAS             Growth-arrest specific micro-tubule binding
        8.9    5.9  26.5        4.2    7.0  18.1    2.9  2  Laminin_I       Laminin Domain I


Domain annotation for each model (and alignments):
>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.15        86       5      72 ..      18      83 ..      14      91 .. 0.85
   2 !   43.0   0.0     6e-14   3.4e-11       6      92 ..     141     227 ..     136     239 .. 0.92
   3 !   47.0   0.0   3.6e-15     2e-12      16      95 ..     281     359 ..     269     368 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.15
   EF-hand_4  5 eeleikkyweifsglkped.nkltgdkvapvlknskleedklekiwdladidedgkldfeefciamrli 72
                 + e++ y ++f++ +p+  + ++gd +   ++++ l+   l +   +ad ++ g l    f +++rli
  KKY20688.1 18 TAEEKRIYGQLFKAADPDGfQVVSGDVAVKFFEKTALDPRILGE---IADTENRGLLTPAGFGVVLRLI 83
                5678899*********9873667889999999999999988875...5999999*99999999999998 PP

  == domain 2  score: 43.0 bits;  conditional E-value: 6e-14
   EF-hand_4   6 eleikkyweifsglkpednkltgdkvapvlknskleedklekiwdladidedgkldfeefciamrlifdlvngeikdvPselPewlv 92 
                   +++ y  +f+    ++ +l gd +  ++ +s l  d l ++w+l d  + g ld  ef+iam+l+  l  ++++ vP++lP  l 
  KKY20688.1 141 PAKVNDYATLFERSGAQNGMLDGDTAKDIFLKSDLGPDILGSVWSLVDTQDRGALDRTEFVIAMHLLSSLKSKTMSGVPTTLPPGLY 227
                 567899*****************************************************************************8764 PP

  == domain 3  score: 47.0 bits;  conditional E-value: 3.6e-15
   EF-hand_4  16 fsglk.pednkltgdkvapvlknskleedklekiwdladidedgkldfeefciamrlifdlvngeikdvPselPewlvpes 95 
                 f +++  ++  +tgd + p +k+s l+e+ l++iwdlad++ dg l+ +ef++am li     ++   +P++lP +l+p +
  KKY20688.1 281 FTTVDtARQGFITGDLAVPFFKSSGLDEEDLAQIWDLADVNRDGILNKDEFAVAMYLIRQ--KKQGGLIPETLPPALIPPT 359
                 55554146789**********************************************987..4556679*********854 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       8.4   4.7e+03       5      13 ..      28      36 ..      26      36 .. 0.89
   2 ?    3.2   0.0      0.14        77       5      27 ..     183     205 ..     179     207 .. 0.88
   3 !   18.4   0.1   1.9e-06    0.0011       2      27 ..     311     336 ..     310     338 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 8.4
                HHHHHTTTS CS
   EF-hand_1  5 iFrefDkDg 13
                +F+ +D Dg
  KKY20688.1 28 LFKAADPDG 36
                7*******8 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.14
                 HHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellk 27 
                 +++++D+   G +d+ Ef+ ++ 
  KKY20688.1 183 VWSLVDTQDRGALDRTEFVIAMH 205
                 7999***************9996 PP

  == domain 3  score: 18.4 bits;  conditional E-value: 1.9e-06
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 l +i++++D+++dG ++++Ef  ++ 
  KKY20688.1 311 LAQIWDLADVNRDGILNKDEFAVAMY 336
                 679*******************9996 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.088        49       7      28 ..     183     204 ..     170     234 .. 0.77
   2 !   17.7   0.1   6.5e-06    0.0037       7      70 ..     280     335 ..     274     336 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.088
   EF-hand_7   7 aFkelDtdgdgyldkeellrll 28 
                 ++ + Dt ++g ld++e+  ++
  KKY20688.1 183 VWSLVDTQDRGALDRTEFVIAM 204
                 4566777777777777766433 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 6.5e-06
   EF-hand_7   7 aFkelDtdgdgyldkee.llrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 aF   Dt + g+++ +  +  +++      + g  l++e l ++++  D ++dG ++ dEF  ++
  KKY20688.1 280 AFTTVDTARQGFITGDLaVP-FFK------SSG--LDEEDLAQIWDLADVNRDGILNKDEFAVAM 335
                 69999*********999666.999......555..45677*********************9888 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   4.5e-08   2.5e-05       6      37 .]    1296    1327 ..    1295    1327 .. 0.95

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 4.5e-08
                  HHHHHHTTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA    6 iqrLveMGFdreevveALratgnNeErAveyL 37  
                  + rL  MG+ r+e+++AL++ ++N++ A++ L
  KKY20688.1 1296 LKRLTGMGWGRDEALKALEQYDYNLDKAIDHL 1327
                  689**************************987 PP

>> BST2  Bone marrow stromal antigen 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   2.3       2.1   1.2e+03      12      40 ..     509     537 ..     503     542 .. 0.86
   2 !   19.4   7.2   2.1e-06    0.0012      13      90 ..     546     622 ..     540     623 .. 0.91
   3 ?    5.2   2.7     0.057        32      30      90 ..     604     664 ..     604     672 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  12 eqecrnvtrlLerqLtqaqeslreaeaqa 40 
                  qe++n+ +   +qL q++++ r+ ea  
  KKY20688.1 509 MQEVQNNREVTGQQLSQSNQQKRDFEARL 537
                 58999**************9999998875 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
        BST2  13 qecrnvtrlLerqLtqaqeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqdaeaeve 90 
                 qe++ v +lLe qL+q++++ r+ +a+ a  + t ++L++  ++  +q q ++++   l+++i+++n ++   + +ve
  KKY20688.1 546 QEVKSV-KLLEDQLAQSRNESRKVQAEFAMLDGTYQDLRNQHQQLSSQVQAEHSESSTLKDKIRQINAEVAALKPAVE 622
                 555554.79***********************************************************9988776665 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.057
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
        BST2  30 qeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqdaeaeve 90 
                 ++++r+ +a++a+ +  v++Lk++  ++k  +  +++++   +ge  kL+ + q a +e+e
  KKY20688.1 604 KDKIRQINAEVAALKPAVEKLKSDVRHQKGLNAINRKQLSTVEGERDKLQGEHQSATKELE 664
                 578999**********************999999999999999999999988888888876 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.14        80      34      52 ..     186     204 ..     171     206 .. 0.89
   2 !   10.4   0.1   0.00081      0.46      23      53 ..     306     336 ..     299     337 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.14
   EF-hand_8  34 efDtdgdGkisfeEFcvll 52 
                 ++Dt + G+++ +EF+  +
  KKY20688.1 186 LVDTQDRGALDRTEFVIAM 204
                 78*************8665 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00081
   EF-hand_8  23 lseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 l ee++  + +++D ++dG+++++EF v + 
  KKY20688.1 306 LDEEDLAQIWDLADVNRDGILNKDEFAVAMY 336
                 5666666677899***************996 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.7    0.0048       2.7       3      30 ..     496     523 ..     494     536 .. 0.77
   2 ?    9.3   3.2    0.0026       1.4       3      35 ..     587     626 ..     579     629 .. 0.72
   3 ?    9.1   0.1     0.003       1.7       1      26 [.     606     631 ..     606     638 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0048
         LPP   3 deLssqVsqLkskvdqlssdvnsakaaa 30 
                  +Ls+qV +L++++++++++ + + +++
  KKY20688.1 496 ANLSNQVGNLSKQMQEVQNNREVTGQQL 523
                 68*****************955554444 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0026
         LPP   3 deLssqVs.......qLkskvdqlssdvnsakaaaqaake 35 
                 ++LssqV+       +Lk+k+ q++++v+++k a+++ k 
  KKY20688.1 587 QQLSSQVQaehsessTLKDKIRQINAEVAALKPAVEKLKS 626
                 5888888633333336888888888888888888887775 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.003
         LPP   1 kldeLssqVsqLkskvdqlssdvnsa 26 
                 k+ +++++V +Lk  v++l+sdv + 
  KKY20688.1 606 KIRQINAEVAALKPAVEKLKSDVRHQ 631
                 799*******************9875 PP

>> YkyA  Putative cell-wall binding lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.8   0.00016     0.088     133     184 ..     483     534 ..     477     536 .. 0.92
   2 ?    7.7   3.3    0.0046       2.6     111     170 ..     566     625 ..     542     635 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00016
        YkyA 133 eLYemLkkeeltleeleeqiekiNesyeevkeaneqFneatkkyneekkefy 184
                 e  ++L++e ++l +l +q+ ++ ++ +ev+++ e   +++ + n++k++f+
  KKY20688.1 483 EVSNKLTSETTELANLSNQVGNLSKQMQEVQNNREVTGQQLSQSNQQKRDFE 534
                 555789********************************************97 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0046
        YkyA 111 eeryeaydklykaYkealeldkeLYemLkkeeltleeleeqiekiNesyeevkeaneqFn 170
                  + ++ +  l   Y+++ +++++L ++ + e  +  +l+++i +iN++   +k a+e++ 
  KKY20688.1 566 RKVQAEFAMLDGTYQDLRNQHQQLSSQVQAEHSESSTLKDKIRQINAEVAALKPAVEKLK 625
                 4556667778889***********************************999999999876 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   6.0     0.006       3.4     200     267 ..     487     547 ..     481     553 .. 0.62
   2 ?   12.6  13.9     8e-05     0.045     144     262 ..     554     668 ..     551     680 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.006
        Spc7 200 eLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsese 267
                 +L +   ela+l++++ +++k+++e+q+++e   +++++ ++qk+++e+++a+ ++++e+       e
  KKY20688.1 487 KLTSETTELANLSNQVGNLSKQMQEVQNNREVTGQQLSQSNQQKRDFEARLAQLRSLYEQ-------E 547
                 455555666666667777777777777777777777777777777777776666666554.......3 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 8e-05
        Spc7 144 leenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles..id.keeLeelreelaelkaeieekkkelaelqeqleeleekieel 239
                 le++l++ ++++++++++ + ld  +++l++++++l+++++ + +++  l++   + ++e+++l+ ++++lk++++++k   a  ++ql ++e + ++l
  KKY20688.1 554 LEDQLAQSRNESRKVQAEFAMLDGTYQDLRNQHQQLSSQVQAEHSESSTLKDkiRQiNAEVAALKPAVEKLKSDVRHQKGLNAINRKQLSTVEGERDKL 652
                 789999*********************************999999665555443113455555555555555555555555555555555555555555 PP

        Spc7 240 keqkseleeeiaeaervleeckg 262
                 + + +++ +e++e+       ++
  KKY20688.1 653 QGEHQSATKELEES-------RS 668
                 55555555555554.......44 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   4.8   0.00038      0.21      51     113 ..     487     549 ..     479     551 .. 0.94
   2 ?    3.5   0.7      0.14        80      15      41 ..     587     613 ..     584     619 .. 0.88
   3 ?   11.0   2.2   0.00067      0.38      13      63 ..     620     670 ..     615     675 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00038
  TMF_TATA_bd  51 klmkeneelkelkkeleelekeleelqeryetlLellGeksEeveELraDvaDlKemykeqve 113
                  kl++e+ el++l++++ +l+k+++e+q+  e + + l + + +  + +a +a l+ +y++ v+
   KKY20688.1 487 KLTSETTELANLSNQVGNLSKQMQEVQNNREVTGQQLSQSNQQKRDFEARLAQLRSLYEQEVK 549
                  7899********************************************************997 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.14
  TMF_TATA_bd  15 erlsseirrlEgElaslkeelerleae 41 
                  ++lss+++   +E ++lk+++ +++ae
   KKY20688.1 587 QQLSSQVQAEHSESSTLKDKIRQINAE 613
                  689*******************99987 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00067
  TMF_TATA_bd  13 lverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelk 63 
                   ve+l+s +r+  g  a  +++l+++e erd+++ e  + +ke ee +++ 
   KKY20688.1 620 AVEKLKSDVRHQKGLNAINRKQLSTVEGERDKLQGEHQSATKELEESRSEV 670
                  59********************************************99875 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00034      0.19       8      22 ..     318     332 ..     316     336 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00034
                 H-SS-SSCE-HHHHH CS
   EF-hand_5   8 iDlNgDGkIskeELk 22 
                 +D+N+DG ++k+E+ 
  KKY20688.1 318 ADVNRDGILNKDEFA 332
                 8************95 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   6.3    0.0029       1.6      38     120 ..     497     582 ..     492     585 .. 0.64
   2 ?   10.7   1.5   0.00073      0.41      50     105 ..     575     630 ..     573     649 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0029
     DUF1664  38 slsdavesvskqleqvseslaatkrhLssridr...vdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleri 120
                 +ls+ v ++skq+++v+++ + t ++Ls+  ++    +++l +   + ++  + v+ ++++l++ ++++++v++ +  l+++ +++
  KKY20688.1 497 NLSNQVGNLSKQMQEVQNNREVTGQQLSQSNQQkrdFEARLAQLRSLYEQEVKSVKLLEDQLAQSRNESRKVQAEFAMLDGTYQDL 582
                 89***************666666666665444311145555555556666666666666666666666666666666666655544 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00073
     DUF1664  50 leqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedves 105
                 l+  +++l+++ ++Lss+++   ++    k+ +++i++ev++++  ++++++dv++
  KKY20688.1 575 LDGTYQDLRNQHQQLSSQVQAEHSESSTLKDKIRQINAEVAALKPAVEKLKSDVRH 630
                 78899999999999999999999999999999999999999999999999999986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       8.9     5e+03       4      20 ..      27      43 ..      25      52 .. 0.79
   2 ?   -2.1   0.0       9.2   5.1e+03       9      29 ..      63      82 ..      61      84 .. 0.84
   3 ?    4.5   0.0     0.073        41       4      27 ..     182     205 ..     180     210 .. 0.87
   4 ?   -0.2   0.1       2.3   1.3e+03       2      19 ..     277     294 ..     276     295 .. 0.88
   5 ?    8.9   0.1    0.0028       1.6       2      25 ..     311     334 ..     310     337 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 8.9
   EF-hand_6  4 eaFklfDkdgdGkidae 20
                ++Fk+ D dg   ++ +
  KKY20688.1 27 QLFKAADPDGFQVVSGD 43
                68******998877765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 9.2
   EF-hand_6  9 fDkdgdGkidaeElrkalrka 29
                 D+++ G ++++ +  +lr +
  KKY20688.1 63 ADTENRGLLTPAGFGVVLR-L 82
                5999*******99999998.5 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.073
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 +++ l D+ + G +d+ E++ a+ 
  KKY20688.1 182 SVWSLVDTQDRGALDRTEFVIAMH 205
                 578899***************997 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 2.3
   EF-hand_6   2 lreaFklfDkdgdGkida 19 
                 ++ aF   D+ + G+i+ 
  KKY20688.1 277 FDVAFTTVDTARQGFITG 294
                 7789************97 PP

  == domain 5  score: 8.9 bits;  conditional E-value: 0.0028
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrka 25 
                 l ++++l D+++dG ++++E+  a
  KKY20688.1 311 LAQIWDLADVNRDGILNKDEFAVA 334
                 567899***************765 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   3.4     0.047        27     113     166 ..     483     543 ..     477     553 .. 0.65
   2 ?   15.8   7.2   1.7e-05    0.0095      96     186 ..     536     626 ..     531     628 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.047
      DUF724 113 klekkieeeesekrkleeeidelekkilelerqlallk.......ekkeaadkeiarlkse 166
                 ++ +k++ e++e ++l++++ +l+k+++e++++++++        ++k + ++++a+l+s 
  KKY20688.1 483 EVSNKLTSETTELANLSNQVGNLSKQMQEVQNNREVTGqqlsqsnQQKRDFEARLAQLRSL 543
                 5678888999999999999999999999999988887755654333343444444444333 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.7e-05
      DUF724  96 kLlslkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeledveqeFeavas 186
                 +L +l++ +++  +  k le ++++ ++e+rk+++e++ l+ + ++l++q ++l ++ +a+ +e ++lk + ++++ e+ + +  +e+++s
  KKY20688.1 536 RLAQLRSLYEQEVKSVKLLEDQLAQSRNESRKVQAEFAMLDGTYQDLRNQHQQLSSQVQAEHSESSTLKDKIRQINAEVAALKPAVEKLKS 626
                 466788888899999999**************************************************************99999888776 PP

>> AIP3  Actin interacting protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  20.4    0.0013      0.73      80     257 ..     497     666 ..     481     671 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0013
                 XXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX. CS
        AIP3  80 hideslaslskelkelkssiesqkaslqevserqeeaakekaseslakkelkaqlkevqslrrdLavlrqlysefkseikeslselrekakkvkeasla 178
                 ++++++++lsk+++e++++ e + ++l++ s++q+++ + +  +   ++  ++++k+v+ l+ +La  r    + +++++++++ l  + +++++ +  
  KKY20688.1 497 NLSNQVGNLSKQMQEVQNNREVTGQQLSQ-SNQQKRDFEARLAQL--RSLYEQEVKSVKLLEDQLAQSR----NESRKVQAEFAMLDGTYQDLRN-Q-- 585
                 46667777777777777777666666655.444444444444422..3577888888888888888665....4566788888999999999992.2.. PP

                 XXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHX.X.XXXHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        AIP3 179 stkkssnrayiekgkkkLseesdklvtkvddLqDlvedlrkDVvqRg.v.rpskkqlesvakeikkakkelkkleeyikte 257
                 +++ ss+ +  ++  ++L+++  ++ ++v  L+  ve+l++DV +++    +++kql++v+ e +k++ e ++ ++ +++ 
  KKY20688.1 586 HQQLSSQVQAEHSESSTLKDKIRQINAEVAALKPAVEKLKSDVRHQKgLnAINRKQLSTVEGERDKLQGEHQSATKELEES 666
                 33334444444455678**************************876524257899************99999888888765 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  17.3    0.0015      0.86     299     427 ..     507     632 ..     482     672 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0015
                 HHHHHHTTTSSSSSHHHHT--HHHHTTGGG-TTTS-GGGSSTTTSTTHHHHHHHHHHHHHHHHHHHHHHS-SS---STTGGGTHHHHHHHHHHHHHHHH CS
        EzrA 299 eAkkeveknlkelkeklehlekqnkelkeeldrlkqsYeLseeeleklrelekelkelekdyeeleekleekkvaYSelqeeleeleekleeieekqee 397
                 +  +ev++n + + ++l++ ++q ++ ++ l +l+  Y   e+e+++++ le++l + +++ ++++ +++  + +Y +l+++ ++l++++++ +++  +
  KKY20688.1 507 KQMQEVQNNREVTGQQLSQSNQQKRDFEARLAQLRSLY---EQEVKSVKLLEDQLAQSRNESRKVQAEFAMLDGTYQDLRNQHQQLSSQVQAEHSESST 602
                 55689999999999999999999999999999999888...67999999****************************************9999999999 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        EzrA 398 ileslkslrkdEkrAreqldeikkelkeik 427
                 ++++++++  + +  +  ++++k++++  k
  KKY20688.1 603 LKDKIRQINAEVAALKPAVEKLKSDVRHQK 632
                 999999999999999999999999988766 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   4.6     0.029        16     401     470 ..     492     561 ..     479     566 .. 0.89
   2 ?    9.0   3.4   0.00088       0.5     405     474 ..     566     636 ..     561     665 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.029
      AAA_13 401 lhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeLkaf 470
                   ++++l +++ ++ k++++++++ e + ++l++++++++  e++ ++L+   ++e ++++ ++++L++ 
  KKY20688.1 492 TTELANLSNQVGNLSKQMQEVQNNREVTGQQLSQSNQQKRDFEARLAQLRSLYEQEVKSVKLLEDQLAQS 561
                 456788999999999***************************************************9986 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00088
      AAA_13 405 eeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeLkaf.Glge 474
                  ++++e+  ++ +y++l ++ ++l  ++++e +e  +l+++i+++ +++   kpa+e++ + +++  Gl+ 
  KKY20688.1 566 RKVQAEFAMLDGTYQDLRNQHQQLSSQVQAEHSESSTLKDKIRQINAEVAALKPAVEKLKSDVRHQkGLNA 636
                 67889999999*************************************************99999888654 PP

>> DUF4047  Domain of unknown function (DUF4047)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   5.1    0.0002      0.11      34     109 ..     525     601 ..     518     618 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.0002
     DUF4047  34 eqakqhkelilheyeemks..klkvdsveeieqalsvwkqgrekikaerealqkvyteieepynqvqeelkvnksess 109
                 +  +q ++  +    +++s  + +v+sv+ +e +l + +++  k++ae   l   y+++ ++++q   ++++++sess
  KKY20688.1 525 QSNQQKRD-FEARLAQLRSlyEQEVKSVKLLEDQLAQSRNESRKVQAEFAMLDGTYQDLRNQHQQLSSQVQAEHSESS 601
                 44444444.444555555423789****************************************************97 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8  14.5      0.26   1.5e+02     196     291 ..     487     585 ..     477     597 .. 0.54
   2 ?    8.5   8.5    0.0024       1.3     190     275 ..     586     671 ..     580     677 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.26
                 XXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 196 kleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklq...eklseleeelaeireemarqlreYqeLLdv 291
                 kl+  +++ ++ s+++ +  ++++e++ + +    +l++  +qk+  ea+la l   +e+e+++++   ++l++  +e +++++e a     Yq+L + 
  KKY20688.1 487 KLTSETTELANLSNQVGNLSKQMQEVQNNREVTGQQLSQSNQQKRDFEARLAQLRSLYEQEVKSVKlleDQLAQSRNESRKVQAEFAMLDGTYQDLRNQ 585
                 555555555555666666666666666666666666666666666666666666666666555543222455555555555555555555555555443 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0024
                 XXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 190 eewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeir 275
                  ++ +s+++  ++++++ ++++r+ + e++ l+  +++l++++ ++k+ +a  ++ql+ +e + ++   ++q++ +elee  +e+ 
  KKY20688.1 586 HQQLSSQVQAEHSESSTLKDKIRQINAEVAALKPAVEKLKSDVRHQKGLNAINRKQLSTVEGERDKLQGEHQSATKELEESRSEVH 671
                 456678888888999999****************************************9999888888888888888888766654 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  12.1     0.076        43      64     144 ..     490     573 ..     480     579 .. 0.59
   2 ?   13.5   6.1    0.0001     0.058      65     131 ..     575     641 ..     569     646 .. 0.87
   3 ?   -0.3   0.5       1.8     1e+03      60      91 ..     640     671 ..     624     676 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.076
        ADIP  64 kleaeierlqskierlktqleqle..rela.lvqakerqlekklktleqklknekeelqrlknalqqiktqyahelkkkdreie 144
                 + ++e+++l++++  l++q ++ +  re++ ++ ++ +q++++ ++  ++l+++ e+  +  + l++  +q ++e +k + e +
  KKY20688.1 490 SETTELANLSNQVGNLSKQMQEVQnnREVTgQQLSQSNQQKRDFEARLAQLRSLYEQEVKSVKLLEDQLAQSRNESRKVQAEFA 573
                 555566666666666666555444224555445555566666666666666666666666666666666677777777666654 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 0.0001
        ADIP  65 leaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrlknalqqiktq 131
                 l+ +++ l++++++l+ q+++ ++e ++++ k rq+++++++l+ ++ ++k +++ +k  ++  ++q
  KKY20688.1 575 LDGTYQDLRNQHQQLSSQVQAEHSESSTLKDKIRQINAEVAALKPAVEKLKSDVRHQKGLNAINRKQ 641
                 7889999**********************************************99888666555554 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.8
        ADIP  60 etirkleaeierlqskierlktqleqlerela 91 
                 +++++ e e ++lq ++++ +++le++++e+ 
  KKY20688.1 640 KQLSTVEGERDKLQGEHQSATKELEESRSEVH 671
                 46677777888888888888888888888775 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   8.5    0.0068       3.8     331     441 ..     481     592 ..     476     598 .. 0.87
   2 ?    6.2   3.7    0.0058       3.2     337     411 ..     598     673 ..     588     688 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0068
        FapA 331 depelkeklkeleeeleeleeeleklkkkikklpklka.ekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeea.kikvnkeiypgv 427
                 d pe+ +kl+   +el +l +++ +l k+++++++ ++ ++q+ s+  +q    +  + +l++ +e+  +  k l+++l+++++e+ k++++  + +g+
  KKY20688.1 481 D-PEVSNKLTSETTELANLSNQVGNLSKQMQEVQNNREvTGQQLSQSNQQKRDFEARLAQLRSLYEQEVKSVKLLEDQLAQSRNESrKVQAEFAMLDGT 578
                 4.78888888888999999999999999999999988889999999999999999999************************99999999999*****9 PP

        FapA 428 kikigkkkliikre 441
                    +++++ +++ +
  KKY20688.1 579 YQDLRNQHQQLSSQ 592
                 99999888877665 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0058
        FapA 337 eklkeleeeleeleeeleklkkkikklpklka.ekqlesekkeqlkklletkeklkeeleeleeelkelkeelesk 411
                 ++ + l+++++++++e+  lk +++kl++    +k l++  ++ql  ++ ++ kl+ e ++ ++el+e  +e++s 
  KKY20688.1 598 SESSTLKDKIRQINAEVAALKPAVEKLKSDVRhQKGLNAINRKQLSTVEGERDKLQGEHQSATKELEESRSEVHSA 673
                 3346677777777777777777777766633346667777889999999999999999999999999999998876 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   6.6       1.1   6.2e+02      12      72 ..     485     545 ..     480     558 .. 0.84
   2 ?   11.6   3.3   0.00048      0.27       8      86 ..     551     626 ..     547     633 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 1.1
     BLOC1_2  12 eaeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiek 72 
                 +++l++ ++++  L +   + s++ ++++++ + + ++l++ n+++  ++  l q+  + +
  KKY20688.1 485 SNKLTSETTELANLSNQVGNLSKQMQEVQNNREVTGQQLSQSNQQKRDFEARLAQLRSLYE 545
                 6778888889999999999999999999999999999999999999999999999988754 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00048
     BLOC1_2   8 skyleaeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLDe 86 
                  k+le +l+ ++++ + +++        y++l+++ ++l++++++  +   e + ++++i qi+++v+ L+ av++L +
  KKY20688.1 551 VKLLEDQLAQSRNESRKVQAEFAMLDGTYQDLRNQHQQLSSQVQAEHS---ESSTLKDKIRQINAEVAALKPAVEKLKS 626
                 577888888888888888888888888888888888888877665555...99999*******************9965 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  19.1     0.014       8.1     329     497 ..     490     671 ..     463     704 .. 0.57

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.014
    Macoilin 329 knskkasagsagssnssskkhsessksvtsssssknskkqklpaGkssaalkdaaenslpnnql......skkdalvrLeadikkLkaeLqasrqteqe 421
                 +++ + ++ s + +n s + ++ +++   ++++ ++s++qk  +    a+l+   e+ + + +l        ++++ +++a+ + L    q  r++ q+
  KKY20688.1 490 SETTELANLSNQVGNLSKQMQEVQNNREVTGQQLSQSNQQKRDFEARLAQLRSLYEQEVKSVKLledqlaQSRNESRKVQAEFAMLDGTYQDLRNQHQQ 588
                 233333344444555555555555555555555555556666555666666666666655555544444444455556777777777777777777777 PP

    Macoilin 422 lrskissltseerslkselqqlkkendllqtklhelvsa..kqk.....dkqtlqqlekrLkeekearaslekqLaeekkrkk 497
                 l s++++  se  +lk +++q++ e   l+  +++l s   +qk     ++++l+++e   ++ + + +s+ k L+e +   +
  KKY20688.1 589 LSSQVQAEHSESSTLKDKIRQINAEVAALKPAVEKLKSDvrHQKglnaiNRKQLSTVEGERDKLQGEHQSATKELEESRSEVH 671
                 77777777777777777777777777777766666655311222222223455555555444444444555555555544443 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   9.9      0.26   1.4e+02      49     131 ..     488     564 ..     479     573 .. 0.57
   2 ?    9.8  11.1   0.00068      0.38      35     131 ..     583     669 ..     565     687 .. 0.58

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.26
       Atg14  49 legkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkk 131
                 l++++      +++ n+++++ +l +++++ +++ +   ++lsq +++ ++  ++la+l++   +  ++ ++l+++l+++r++
  KKY20688.1 488 LTSET------TELANLSNQVGNLSKQMQEVQNNREVTGQQLSQSNQQKRDFEARLAQLRSLYEQEVKSVKLLEDQLAQSRNE 564
                 33333......555566666666666666666666666666666666666666666666666666666666666666666654 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00068
       Atg14  35 ksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkk 131
                 + ++++l +          +++ + ++  ++k+k++++ +++a l+  +++lk +++++k  +++ +k+l++   +  k + +++s+++elee+r +
  KKY20688.1 583 RNQHQQLSS----------QVQAEHSESSTLKDKIRQINAEVAALKPAVEKLKSDVRHQKGLNAINRKQLSTVEGERDKLQGEHQSATKELEESRSE 669
                 222222222..........222333444456666666666666666666666666666666666666666666666556677777777777776654 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  19.5     0.027        15      41     150 ..     501     606 ..     483     619 .. 0.66
   2 ?    6.3   1.6      0.01       5.8      28      78 ..     622     671 ..     618     679 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.027
   Golgin_A5  41 sstalsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqs 139
                     ls++++e++++r+++ ++l ++nqq ++  + l++l + +++e++s    ++ le+ql+++r+++++v+ae + l+   + l++++++  +++q+
  KKY20688.1 501 QVGNLSKQMQEVQNNREVTGQQLSQSNQQKRDFEARLAQLRSLYEQEVKS----VKLLEDQLAQSRNESRKVQAEFAMLDGTYQDLRNQHQQLSSQVQA 595
                 23457888889999999999999999999999999998888888888888....667777777777777777777777766666666666655555555 PP

   Golgin_A5 140 rikdrekeiek 150
                 ++ +  +  +k
  KKY20688.1 596 EHSESSTLKDK 606
                 55444332222 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.01
   Golgin_A5  28 asLkegsgeeglesstalsaeldelkqerdllreelqklnqqieqlrtelq 78 
                 ++Lk++   ++  ++ ++ ++l+ ++ erd l+ e q++++++e+ r+e++
  KKY20688.1 622 EKLKSDV-RHQKGLNAINRKQLSTVEGERDKLQGEHQSATKELEESRSEVH 671
                 6677553.55556667899*****************************986 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4  13.5   0.00025      0.14      63     184 ..     466     589 ..     443     589 .. 0.82
   2 ?    6.6  11.0     0.015       8.3      94     180 ..     583     669 ..     578     674 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00025
       ATG16  63 asasq..snskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDE 159
                 a++ +  s+    +  ++ ++kl++  +ela+l  + g l+++ +e+++  ++  ++l++ +++ ++ ea+ a+l+  +++  + ++ +e  + + + E
  KKY20688.1 466 ARSPPapSDDLLGDADPEVSNKLTSETTELANLSNQVGNLSKQMQEVQNNREVTGQQLSQSNQQKRDFEARLAQLRSLYEQEVKSVKLLEDQLAQSRNE 564
                 2222223455667778899999999999*********************************************************************** PP

       ATG16 160 lsaLqlqlnqaEeklrklekENkeL 184
                     q ++ +++ ++++l++  ++L
  KKY20688.1 565 SRKVQAEFAMLDGTYQDLRNQHQQL 589
                 **********999999998877766 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.015
       ATG16  94 yksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklrklekE 180
                   ++++l++++++  +e ++l++k+++ ++++a+l+  +++l+  ++ ++   +  +k + ++  E + Lq + ++a ++l++ + E
  KKY20688.1 583 RNQHQQLSSQVQAEHSESSTLKDKIRQINAEVAALKPAVEKLKSDVRHQKGLNAINRKQLSTVEGERDKLQGEHQSATKELEESRSE 669
                 445566666666666666666666666666666666666666666666666666666666666666666666666666665554444 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   8.2    0.0026       1.4      56     138 ..     486     568 ..     483     576 .. 0.84
   2 ?    0.7  11.1      0.66   3.7e+02      43     133 ..     578     668 ..     557     675 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0026
     DUF4201  56 kkIeernkeLkrlkkkttktvhalthlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggll 138
                 +k+ + + eL +l++++++ +++++++++++    ++ls+ +++ ++ e+rla+lr   ++  +  + l++q ++ + ++  +
  KKY20688.1 486 NKLTSETTELANLSNQVGNLSKQMQEVQNNREVTGQQLSQSNQQKRDFEARLAQLRSLYEQEVKSVKLLEDQLAQSRNESRKV 568
                 67777789***********************************************9888877777777777777777666554 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.66
     DUF4201  43 dFeqlqienqalnkkIeernkeLkrlkkkttktvhalthlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkq 133
                  ++ l+++ q+l+ +++  + e + lk+k+ +   +++ lk     l+s ++++k       ++l  ++ e  k++ e++ + k+ e+ ++
  KKY20688.1 578 TYQDLRNQHQQLSSQVQAEHSESSTLKDKIRQINAEVAALKPAVEKLKSDVRHQKGLNAINRKQLSTVEGERDKLQGEHQSATKELEESRS 668
                 5899999999999999999999999999999999999999999999999999888888888888888888888888888888888888776 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   9.6    0.0024       1.4      11      93 ..     487     569 ..     482     572 .. 0.88
   2 ?    3.1   4.9      0.15        86      10      81 ..     577     648 ..     570     674 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0024
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHH CS
  Laminin_II  11 takevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnis 93 
                 ++++    la+ls+++ n++++++e++++ e t ++++++n++ rd +    +L  l +q ++ +k l+ +  +s + s++++
  KKY20688.1 487 KLTSETTELANLSNQVGNLSKQMQEVQNNREVTGQQLSQSNQQKRDFEARLAQLRSLYEQEVKSVKLLEDQLAQSRNESRKVQ 569
                 44555567899******************999****************************99999999999998888777775 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.15
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTG.GGHHHHHHH CS
  Laminin_II  10 etakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLl.dklkelkql 81 
                  t +   +q ++ls +++ + ++ s+++++++++n++v +++ a++  ++ v++ +k ++ +  ++l++++  
  KKY20688.1 577 GTYQDLRNQHQQLSSQVQAEHSESSTLKDKIRQINAEVAALKPAVEKLKSDVRH-QKGLNAINrKQLSTVEGE 648
                 6777888999*****************************999999999999987.445555541445555555 PP

>> CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  16.3    0.0029       1.6     141     248 ..     484     591 ..     477     596 .. 0.92
   2 ?    2.9  12.9     0.072        40     175     276 ..     560     665 ..     555     676 .. 0.55

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0029
    CALCOCO1 141 ltqralekEteLeRlkerakkalaqrkeeeaerkqlqakleqseeelrslskelqelrnslaerdtqvlqLqdtittltqkLttAqrkeaenEallkel 239
                 ++++     teL  l +++  + +q +e +++r+   ++l+qs++  r + + l +lr+  ++   +v  L+d++++ +++  + q   a  + + ++l
  KKY20688.1 484 VSNKLTSETTELANLSNQVGNLSKQMQEVQNNREVTGQQLSQSNQQKRDFEARLAQLRSLYEQEVKSVKLLEDQLAQSRNESRKVQAEFAMLDGTYQDL 582
                 5677778889***************************************************************************************** PP

    CALCOCO1 240 rslqerlaa 248
                 r  +++l +
  KKY20688.1 583 RNQHQQLSS 591
                 *98887754 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.072
    CALCOCO1 175 qlqakleqseeelrslskelqelrnslaerdtqvlqLqdtittltqkLttAqrkeaenEallkelrs....lqerlaaSerkvegLkeeLssvaaqrdr 269
                 q++++ ++ ++e   l   +q+lrn++++ ++qv+  +++ +tl++k+ + +  +a   ++ ++l+s     + + a+  ++  + + e  ++ + +++
  KKY20688.1 560 QSRNESRKVQAEFAMLDGTYQDLRNQHQQLSSQVQAEHSESSTLKDKIRQINAEVAALKPAVEKLKSdvrhQKGLNAINRKQLSTVEGERDKLQGEHQS 658
                 333344445556666666667788888888888888888888888888877777776655555555421103333333333344444444444444444 PP

    CALCOCO1 270 tqaeLHq 276
                 ++ eL  
  KKY20688.1 659 ATKELEE 665
                 4444444 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  30.0      0.02        11       9     187 ..     491     671 ..     484     673 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.02
  Lebercilin   9 rllkikeLqnelaelqskleelrkEnklLkrlqkrqekaLsk.yedteaeLpqllarhneEvrvlrerlRksqekerelekklkekeaellrlkdklkk 106
                 ++ ++ +L+n++ +l ++++e+++ n+ +  +q  q+++ ++ +e + a+L +l ++  + v+ l ++l +s+++ r+++ +    +   + l++++++
  KKY20688.1 491 ETTELANLSNQVGNLSKQMQEVQN-NREVTGQQLSQSNQQKRdFEARLAQLRSLYEQEVKSVKLLEDQLAQSRNESRKVQAEFAMLDGTYQDLRNQHQQ 588
                 4567899***************98.566666777776665544******************************************************** PP

  Lebercilin 107 lkkLsedknLaereeLqkkLeeleakleekeekikeLerklele...eksfrrqlaaekkktkeaqeevkalqeeierlkqklk 187
                 l++ +++ +  e ++L+ k+++++a++ + +  +++L+  ++ +   +   r+ql + +    ++q e +++++e+e+ +++++
  KKY20688.1 589 LSSQVQAEHS-ESSTLKDKIRQINAEVAALKPAVEKLKSDVRHQkglNAINRKQLSTVEGERDKLQGEHQSATKELEESRSEVH 671
                 *****99996.******************9999999987666541115667888888888999999999999999998877665 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3  19.5      0.16        88      34     131 ..     494     595 ..     482     610 .. 0.51
   2 ?    5.6  10.7     0.016       8.9      48     137 ..     578     664 ..     562     674 .. 0.62

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.16
         GAS  34 eieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlkn....yekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykk 128
                 e+++l ++    +k+++e++++ +   ++L + ++++   +++l++    ye++ +s k l+ +l ++ +e ++++ e  +l   ++ + ++ ++l+++
  KKY20688.1 494 ELANLSNQVGNLSKQMQEVQNNREVTGQQLSQSNQQKRDFEARLAQlrslYEQEVKSVKLLEDQLAQSRNESRKVQAEFAMLDGTYQDLRNQHQQLSSQ 592
                 445555555555566666666666666666666555555555444322224444444444445555555555555555555544444444444444444 PP

         GAS 129 fea 131
                  +a
  KKY20688.1 593 VQA 595
                 443 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.016
         GAS  48 elseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevq 137
                   +++ ++ ++l+ ++++   e   L+ ++++ + + ++l   k  +++l++ +++ k  + + ++++++ve erd+l+ ++++a +e+ 
  KKY20688.1 578 TYQDLRNQHQQLSSQVQAEHSESSTLKDKIRQINAEVAAL---KPAVEKLKSDVRHQKGLNAINRKQLSTVEGERDKLQGEHQSATKELE 664
                 5566666777777777777777777777776666644443...44455555666666666667777777777777777777766666654 PP

>> Laminin_I  Laminin Domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   3.1       1.2   6.9e+02      18     242 ..     499     527 ..     483     529 .. 0.47
   2 ?    7.0  18.1    0.0075       4.2      13     154 ..     529     667 ..     522     668 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.2
   Laminin_I  18 nanledltkeLqeklskesakkskieilekelesLaqeteeLqkkatqvlakaqkvnaesertlnnakeLaekikkladnikeilekvatlneneealp 116
                   +                                                                                                
  KKY20688.1 499 SNQ------------------------------------------------------------------------------------------------ 501
                 122................................................................................................ PP

   Laminin_I 117 ssklseelaeaqrlLeelrsRdftkqleeaeaelkaAqkLLsrvqtllqklqeenkaLkealrdsLaeyeakLsDlrelleeAaaktrdanrlnlanqa 215
                                                                                                                    
  KKY20688.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

   Laminin_I 216 nlreiekkkeevseeknqleetlktar 242
                   ++++k+++ev+++++++ ++l++++
  KKY20688.1 502 -VGNLSKQMQEVQNNREVTGQQLSQSN 527
                 .22455555555555555555555554 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0075
   Laminin_I  13 apykinanledltkeLqeklskesakkskieilekelesLaqeteeLqkkatqvlakaqkvnaesertlnnakeLaekikkladnikeilekvatlne. 110
                 + +  +a l++l++  ++ ++  +  ++++  + +e+ +++ e+  L +  +  + ++q++  ++++  +++++L++ki+++++++ ++   v++l   
  KKY20688.1 529 QKRDFEARLAQLRSLYEQEVKSVKLLEDQLAQSRNESRKVQAEFAMLDGTYQDLRNQHQQLSSQVQAEHSESSTLKDKIRQINAEVAALKPAVEKLKSd 627
                 56778999*************************************************************************************999986 PP

   Laminin_I 111 neealpssklseelaeaqrlLeelrsRd.ftkqleeaeaelkaAq 154
                   ++   +++++++       e   +Rd ++ +++ a++el++++
  KKY20688.1 628 VRHQKGLNAINRKQLSTV---E--GERDkLQGEHQSATKELEESR 667
                 555555566665543322...1..357778888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1670  (0.0931452); expected 358.6 (0.02)
Passed bias filter:                      628  (0.0350271); expected 358.6 (0.02)
Passed Vit filter:                       152  (0.00847788); expected 17.9 (0.001)
Passed Fwd filter:                        88  (0.00490825); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 1.52u 0.36s 00:00:01.88 Elapsed: 00:00:00.58
# Mc/sec: 6859.00
//
Query:       KKY20689.1  [L=484]
Description: putative n-sulfoglucosamine sulfohydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-44  151.3   0.9    1.1e-41  143.2   0.1    2.7  2  Sulfatase       Sulfatase
    1.5e-07   31.6   0.5    2.6e-06   27.7   0.1    2.2  2  DUF4976         Domain of unknown function (DUF4976)
     0.0003   20.5   0.7      0.011   15.4   0.7    2.2  1  Phosphodiest    Type I phosphodiesterase / nucleotide pyropho
     0.0092   16.7   0.0      0.019   15.7   0.0    1.5  1  Sulfatase_C     C-terminal region of aryl-sulfatase
  ------ inclusion threshold ------
      0.031   14.2   0.0      0.053   13.5   0.0    1.3  1  Thioredox_DsbH  Protein of unknown function, DUF255
      0.043   12.4   0.0      0.061   11.9   0.0    1.1  1  DUF229          Protein of unknown function (DUF229)


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.2   0.1   3.8e-45   1.1e-41       1     308 [.       9     295 ..       9     296 .. 0.82
   2 ?   -1.3   0.1      0.38   1.1e+03     178     200 ..     327     349 ..     324     389 .. 0.76

  Alignments for each domain:
  == domain 1  score: 143.2 bits;  conditional E-value: 3.8e-45
                 EEEEEEEESSE-TTGSGGGTTTSCSSHHHHHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTT.HHCTTTS-HHHHHHHHTT-EEEE CS
   Sulfatase   1 pnvvliladdlgagdlglyggktattpnldrlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgg.gglpqteatLpellkeaGYntaa 98 
                 +n++l++addlg  +lg+yg     tpn+d+la +g++ft +++++++cs+sr+ + tg+  h+sg +   + ++   +  ++ t p l++e GY t++
  KKY20689.1   9 KNILLLIADDLGK-NLGCYGETSISTPNIDALASQGVLFTHAFTSTASCSNSRSVIYTGLHTHQSGQYGLAGKAHhFVIFDHVKTSPALFRELGYLTGL 106
                 6**********77.9***************************************************77766655599999******************* PP

                 EEES-SCCSGGGSHHCCTTTSEEEETSSSCHHTCCCCCCCCCECTCCCTTTTCSHHHHHHHHHHHHH.HCCC.TSSEEEEEEE-TTSSSTCTCGGHTCC CS
   Sulfatase  99 igkwhlgwssrqsvyknrgfdrflgfptgsaalkdpekseyngevlrvppeggysddrlldealefl.larn.dkpfflylatlapHappeapdeyakk 195
                 igk h+g+ s             ++   +++ +++                   + + ++d+a  f  +a++ d+ ffl++ ++ pH       ++ +k
  KKY20689.1 107 IGKIHVGPASSYP----------WE--VNQESITR-------------------DVAWVADNAGAFFeKAKEqDRSFFLTVGYIDPHRD-MTRSGFGNK 173
                 *******993322..........22..22333333...................3344566666666644444**************82.222333222 PP

                 GSTTTTCCCCCCH.........................HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSS CS
   Sulfatase 196 yatffddgseaar.........................qlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganay 269
                   +f+       +                            ++y++s+++ D++ig +l +L+++ l d+tl++f+SD+g+           +k+ + y
  KKY20689.1 174 -DKFD-------SriesvvykpediivpqyinnidesrFEFSEYFQSISRLDQGIGLILRKLQDADLEDDTLLIFLSDNGPPF-------LNSKT-TLY 256
                 .2332.......23334445566777777888888887899****************************************55.......88999.*** PP

                 HHHHBEEEEEEETTTSHCEEECSEEEGGGHHHHHHHHTT CS
   Sulfatase 270 eggtrvPllvwwpgekaprvseelvshiDlfptildlag 308
                 + g+r P++v+ p+     ++ + vs +D+fpt+l++a+
  KKY20689.1 257 DAGVRLPFIVRHPEVRTGITNPNMVSYVDIFPTFLEWAN 295
                 *************************************97 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.38
                 EE-TTSSSTCTCGGHTCCGSTTT CS
   Sulfatase 178 atlapHappeapdeyakkyatff 200
                 ++ ++H+ +e+++ +++++ +  
  KKY20689.1 327 HVYGSHTFHEVTNYWPTRFLRTR 349
                 66788888888888887764444 PP

>> DUF4976  Domain of unknown function (DUF4976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.093   2.8e+02       2      51 ..     301     352 ..     300     361 .. 0.56
   2 !   27.7   0.1   8.5e-10   2.6e-06      62     102 ..     406     446 ..     396     447 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.093
     DUF4976   2 padmqGksllpllkgkk...kkewrkalyYhyyeyPaehavk...rhygvrteryk 51 
                 p+ + G+s+lp+l   +   ++ew++++y       + h+v+   + + +rt +yk
  KKY20689.1 301 PNGLPGQSILPILPRTDlipDSEWKNHVY----GSHTFHEVTnywPTRFLRTRNYK 352
                 67788999999988432222445555554....44444444411144556677776 PP

  == domain 2  score: 27.7 bits;  conditional E-value: 8.5e-10
     DUF4976  62 welyDlkkDpkelknlyddpeyeevvkelkkkleelrkkyk 102
                  elyDl++Dp+e++nl +dp+y++v   l+k+le+ + ++ 
  KKY20689.1 406 EELYDLENDPQEIRNLAKDPSYRDVLLGLRKRLEDWQMDTA 446
                 49********************************9987765 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.7   3.6e-06     0.011      20     233 ..      32     245 ..      26     258 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.6e-06
                   TSHHHHHHHHHSEEESEEE-SSS-SHHHH.HHHHHHSS-HHHHS--SSSEEETTTTEEEEEETTTTGG..GGGCTTS-HHHHHHHTHTTCEEEESE. CS
  Phosphodiest  20 llpnlaaLakegvsapnlrpvfPtlTfpn.haslvTGlyPgeHGivgNtfydrktgeyvvfvtededa..prwwqgepiwdtaakarglkaaalfw. 112
                    +pn++aLa++gv ++  ++   t +++n  + ++TGl+  + G +g        g+   fv+ d+ +  p + ++      +    gl  +++ + 
    KKY20689.1  32 STPNIDALASQGVLFT--HAFTSTASCSNsRSVIYTGLHTHQSGQYG--LA----GKAHHFVIFDHVKtsPALFRE------LGYLTGL-IGKIHVg 113
                   5899999999999999..77777888877356789999999999999..22....333367777665433333333......3332244.2222222 PP

                   TTTTSEBTTCT.SC................TBHHSBTCT.CSTTSCHHHHHHHHHHHHHHHCHTHSHHHHHCT.SSE.SEEE.EEECCCHHHHHHH- CS
  Phosphodiest 113 pgsevdystyyylvs...............etppryleddfnakvpledkvdkavlqtwldaafakvvlekel.ekp.dlll.vyleetDtvgHkfG 191
                   p s  ++   +   s                 ++++ ++ f  +v++ d   ++ + + + + ++ ++  ++  +kp d ++  y++++D +  +f 
    KKY20689.1 114 PASSYPWEVNQE--SitrdvawvadnagafFEKAKEQDRSFFLTVGYIDPHRDMTR-SGFGNKDKFDSRIESVvYKPeDIIVpQYINNIDESRFEF- 206
                   444444432211..111222222222222222222222234444455554444233.334443333222222245553333325899999999999. PP

                   TTSHHHHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES-- CS
  Phosphodiest 192 pdspevedalrrvDkaigdLlealderglsaetniilvSDHG 233
                      +e ++ ++r+D+ ig +l+ l++  l+++t +i +SD G
    KKY20689.1 207 ---SEYFQSISRLDQGIGLILRKLQDADLEDDTLLIFLSDNG 245
                   ...79***********************************88 PP

>> Sulfatase_C  C-terminal region of aryl-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.4e-06     0.019      53      91 ..     405     442 ..     372     449 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.4e-06
                  CEEEEETTT-TT--S-TTSTTCCHHHHHHHHHHHHHHHC CS
  Sulfatase_C  53 pPllFdlerDpsEkyplsaespeykevlkeikkaveehk 91 
                  p  l+dle+Dp+E ++l++ +p y++vl  ++k +e+++
   KKY20689.1 405 PEELYDLENDPQEIRNLAK-DPSYRDVLLGLRKRLEDWQ 442
                  457***************5.7*******99999999877 PP

>> Thioredox_DsbH  Protein of unknown function, DUF255
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.8e-05     0.053      17      63 ..     128     173 ..     116     180 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.8e-05
  Thioredox_DsbH  17 knpvdWypwgeea.lekakeedkpillsiGysachWChvmekesfede 63 
                     +  v+W + ++ a +ekake+d+  +l +Gy   h  + m++  f ++
      KKY20689.1 128 TRDVAWVADNAGAfFEKAKEQDRSFFLTVGYIDPH--RDMTRSGFGNK 173
                     56799*9999988369*****************99..88888888776 PP

>> DUF229  Protein of unknown function (DUF229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     2e-05     0.061     306     365 ..     208     266 ..     204     314 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2e-05
      DUF229 306 dkfnllealDedllkylkklekkgllentlvlllsDHGlrfgklrktsqGilEerlPlml 365
                 ++f+ +++lD+ +  +l+kl++ +l ++tl+++lsD G  f + + t     + rlP+++
  KKY20689.1 208 EYFQSISRLDQGIGLILRKLQDADLEDDTLLIFLSDNGPPFLNSKTTLY-DAGVRLPFIV 266
                 7999*********************************976665554443.3345555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3245.68
//
Query:       KKY20690.1  [L=441]
Description: putative endo-rhamnogalacturonase f [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-16   59.1   0.0    1.3e-09   37.6   0.1    2.5  2  Glyco_hydro_28   Glycosyl hydrolases family 28
    5.9e-06   26.3   4.2    0.00011   22.1   0.0    2.7  2  Pectate_lyase_3  Pectate lyase superfamily protein


Domain annotation for each model (and alignments):
>> Glyco_hydro_28  Glycosyl hydrolases family 28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   5.6e-08   0.00051      52     135 ..     148     225 ..      70     246 .. 0.84
   2 !   37.6   0.1   1.5e-13   1.3e-09     221     310 ..     254     344 ..     226     359 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5.6e-08
  Glyco_hydro_28  52 ivisgekitvlgisGkgtidGqGqawwdgkgkkkkegkkkpkflvikkvknskiknlniknspvfhfsvesgkdltisditida 135
                     +++++++ +    +G g i GqG  + + + +      + p+++++ +  n++i++l +++sp+fhf++  g ++ + ++ti  
      KKY20690.1 148 VIVNAVDFEFYSSNGFGAIQGQGYLYRNANNT------ERPRVVRLISPINASIHDLLLIDSPKFHFVFDFGVNIEVYHLTIRG 225
                     55666777778889999******999887766......89****************************************9974 PP

  == domain 2  score: 37.6 bits;  conditional E-value: 1.5e-13
  Glyco_hydro_28 221 IKtikgatgtvsnvkyeniklknvaypividqdYenkeptgkp.tsgvkisdvtfknvtgtvks.aea..vkllcekgskcsdvtmsdvkitgg 310
                     IKt+ g +g v+nv++eni  k   y++ ++q ++n   t +p t +v++++++f+n tg+v++ a++  ++l +++ +  ++vt++d ++   
      KKY20690.1 254 IKTYPGGSGYVTNVTFENIRSKASLYGLDVNQYWQN---TFTPdTGAVQLENLVFNNFTGSVANgANRppLYLIGNDLKITQNVTIKDFSLWTE 344
                     9*******************99999*****997655...4445478****************997654448999999999********998664 PP

>> Pectate_lyase_3  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.2e-08   0.00011       3      56 ..      42      95 ..      41     101 .. 0.92
   2 ?    2.5   2.6     0.013   1.1e+02     130     202 ..     264     350 ..     233     363 .. 0.59

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.2e-08
                     EGGGGT---EEEEE-HHHHHHHH......HTSS-EEE-SEEEEESS-EEE-SSE CS
  Pectate_lyase_3  3 nVkdyGakgDGvtDdtaaiqkaiscasatttgavVYfPaGtYlvsspiilksgv 56
                     n+ dyGa gD +t++  ai +a +    tt g+   +P GtYl+++ + l  g+
       KKY20690.1 42 NILDYGAIGDNSTNVAPAIYAAYNRCVLTTPGSRLLVPNGTYLLEENVVLSNGT 95
                     99*********************9888888899999*********999888877 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.013
                      EES-SSEEE-SSS.........---TT---SS--EEEE..ES-EEES-SS-SEEES...-EEEEEES-EEE-S--SEEE-.T.T-E.EEE CS
  Pectate_lyase_3 130 lenvefemseasg.........tkhqgifiengsggfl..ndlvfsglgdigiavg...nqqftvrnitfnnattgievl.w.gwg.wtl 202
                      ++nv+fe+  ++          + +   f+ ++  g +  ++lvf+++ +  ++     + + + ++++++++ t  +++ w ++g +++
       KKY20690.1 264 VTNVTFENIRSKAslygldvnqYWQ-NTFTPDT--GAVqlENLVFNNFTGSVANGAnrpPLYLIGNDLKITQNVTIKDFSlWtENGdFVV 350
                      5677774444442133333221111.2222222..2223489999998888888854777777778888888777666542533334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.53
# Mc/sec: 2513.30
//
Query:       KKY20691.1  [L=577]
Description: putative mfs [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-17   60.9  18.1    1.5e-16   60.3  18.1    1.2  1  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.23   11.8   2.4        2.3    8.6   0.0    2.9  2  DUF1772   Domain of unknown function (DUF1772)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3  18.1   1.7e-20   1.5e-16       2     351 ..     123     499 ..     122     501 .. 0.78

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 1.7e-20
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlga 99 
                 l+++f   ++r++l++a+   l +d  +s   ++ +  +y +g+++a +p   ++ ++G+ r++ + +++++l+   +  f ++   ++++r++ Gl++
  KKY20691.1 123 LVMFFALNIDRGNLSLAVAGNLLDDIKLSTNDYNNAQNMYRVGFLIAEIPSQLIGKKLGPDRWIPVQIICWSLA-SGGQfFMQNRAGFFACRFFIGLFM 220
                 56778888889999999988888***************************************************.444423255447************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee.... 188
                 g+++p ++ +++  ++++e +  ++l+  + s++ +++  ++  +++  g      Wr++f+i a++s++++ +  + ++++ p+  + + ++++    
  KKY20691.1 221 GGFIPDSILYLSYFYTRTEMPIRLALFWFTDSMSGVIASFIAYGVLHMDGvagreaWRWLFMIEALISIVVGFV-SFIFLVPGPTQTKTRFWPKGwfte 318
                 *******************************************999777799*******************884.455556666666666666658877 PP

       MFS_1 189 .....................kgtgpaplvpawkallkdpvlwillialllfffgfsg....lltllplylqevlglsglllaglllallalvgailal 262
                                      ++++ ++    w++l+       ++ + +++ + f +      ++l+l + ++ g++  ++++ll   + +++ai +l
  KKY20691.1 319 reekiivnkvlrddpskgdmhNRQAITAKML-WESLKDYD----IWPVYIIG-ILFEIpaspPKAYLTL-ALKQIGFN-SFQVTLLTIPVTIFAAINML 409
                 7776666666655555554444444444444.77777777....44443333.2444455679999999.59******.799998899999999999** PP

       MFS_1 263 lagrlsdrlgrrrrlllallllllaalglallavt...ssavllll....vlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggal 351
                 ++++l  ++    ++ + +ll+ +++l ++++      +  ++++     +++l+G      +++ + + +s+ +  + ++  ++l+n++ +l+g+ 
  KKY20691.1 410 WITALTEKFH---QIAIVGLLCQIWVLPCLIVDYKaagK--LFSWGqyavSFILLGQpSTHAAQAGWCSRMSNAV--RTRAVSAALYNITIQLSGIA 499
                 ********65...56666666666666666666665452..3333344446666777777777888888888888..9****************987 PP

>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00025       2.3      43      89 ..     256     305 ..     230     354 .. 0.73
   2 ?    1.4   0.8     0.041   3.7e+02      31      56 ..     511     541 ..     391     553 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00025
     DUF1772  43 allsalafa.ylaaraasrgarllylaaaallllsivpyTllvmvP..tN 89 
                 +++s +a++ +     a+r+a+++++ + al+++++ ++++++ vP  t 
  KKY20691.1 256 VIASFIAYGvLHMDGVAGREAWRWLFMIEALISIVVGFVSFIFLVPgpTQ 305
                 67788888855558888999999998888887766666777777762244 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.041
     DUF1772  31 lfkrgkavfpplallsalafayla......ar 56 
                 l++rg++++ ++ +++++a+a la      ++
  KKY20691.1 511 LYHRGNRQLIAINVGTIVAYA-LAkayyvfRN 541
                 688898888888888888887.4445665433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 3862.07
//
Query:       KKY20692.1  [L=924]
Description: putative secreted protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (924 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 6000.28
//
Query:       KKY20693.1  [L=234]
Description: hypothetical protein UCRPC4_g04160 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.49
# Mc/sec: 1424.61
//
Query:       KKY20694.1  [L=592]
Description: putative lipase 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-86  290.4   0.0    4.7e-85  286.4   0.0    1.9  1  COesterase     Carboxylesterase family
     0.0006   19.7   0.7      0.014   15.3   0.1    3.0  3  Abhydrolase_3  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.4   0.0   5.3e-89   4.7e-85       2     498 ..      37     564 ..      36     577 .. 0.83

  Alignments for each domain:
  == domain 1  score: 286.4 bits;  conditional E-value: 5.3e-89
                 SSEEEETTEEEEEEEEEESTCSEEEEEEEEESSB---GGGTTS--BE.----SSEEECBS---BESEECSSSSSCGHHCHHHBES---EEEEEEESSSS CS
  COesterase   2 spvvetslGkvrGkrvklksekevdaFlGiPYAepPvgelRFkkPep.aepwtgvrdAtkfspaCpqnaeksekeekeleawvsEDCLyLnvytPkekk 99 
                 +p+v++++G+  G+++++ ++   d FlG+PYA+pPvg+lRF+ P+  +++w+++r+At++sp+C+   +        l ++  EDCL++nv  P+   
  KKY20694.1  37 APSVDVRNGTYYGTYNPTYDQ---DLFLGMPYAQPPVGNLRFQLPQSlTTTWNETRNATQYSPECYGYGSDDW----VLGNVLAEDCLTINVVRPSGV- 127
                 58899************7766...9**********************9******************9885433....3334489***********996. PP

                 STTSSEEEEEEE--STTTS-BGCG..S-THHHHHHH.....TSEEEEE----HHHHH-B-SS..TTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEE... CS
  COesterase 100 eakkklPVlVwihGggfqtgsase..ydgsaLaaeg.....nvivVtinYRlGvlGFlstgd..eeapGNvGllDqvlALrWVkenIasFGGdper... 186
                 ea  +lPVl+wihGggf +g +++  y++s+L+++       ++ V+inYRl  +GFl  ++  e+   N+Gl Dq+lAL+WV+enI++FGGdp +   
  KKY20694.1 128 EAGANLPVLFWIHGGGFFEGGSRDprYNQSFLVQQSvyaraPIVAVSINYRLSGWGFLYGNEvaEAGVANIGLRDQRLALQWVQENIEAFGGDPTKgnl 226
                 788888****************9899********99999999*****************9775466677************************976555 PP

                 ..............EEEEEETHHHHHHHHHHHSGGGT..TSBSEEEEES--TTSTTTSBSH..HHHHHHHHHHHTTS-CSSHHHHHHHHHCS-HHHHHH CS
  COesterase 187 ..............vtlfGesAGaasvsllllsplsr..glfkraIlqSGsalspwaiqkk..arkrakklakkvgckassskelveclrsksaeelld 267
                               v + GesAG+ sv  +l+    r  glf+ aI++SG++++   + +    +   +++ ++++c  ++++++++clr+ +ae l d
  KKY20694.1 227 vfsffigniltptlVVIQGESAGGNSVGSHLIAYGGRddGLFRGAIAESGAPTALSIYYNAsgWQPFYDTVVNATNC--TTANDTLQCLRTVPAEILSD 323
                 555555555555558999***************8777679**********88776555555567778899*******..666789************** PP

                 CCGGSSSSSSTTC-SSS-B--SSSSSS-HHHHHHCGC..CSEEEEEEETTTTHHHHCCHSTTTSSSSHHHHHHHHHHHHHHHHHHHCC......HHHHH CS
  COesterase 268 aqekaleasssklvsfaPvvdgdflpekPeellkseg..kvplliGvnkdegllflaylldkeksvkkkeeklsesllkdelyleaek......keels 358
                   ++    ++ +  s+ Pv+dgdfl ++ ++ll++    kvp l+G+n deg+ f ++  +++k+  ++  +  +++++ ++ +          +e   
  KKY20694.1 324 VFNS----TALEDASWRPVIDGDFLVDSGATLLRKGRfvKVPFLLGTNFDEGTAFGTQGINTTKQFIEDVISSGTNISNATAATI--AalypdiPEIGI 416
                 **88....89999**********************66********************9888864444444333333322222222..134455544444 PP

                 HHHHHHHSTTTSSTCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTT-SEEEEEEE--STTSSSTTTGSSBTTTTHHHHTTGGGTSGCS.......... CS
  COesterase 359 eaikeeytdeadrddaeksrkallelltdvlfkapvlrtaklhasrgspvYlYsfdyrnssskkpkwmgvvhgdeleyvfglpllekee.......... 447
                  a+++     a +  + +  k+ +++ +d +++a+ + t +++a+++ + Y Y+f+     +  p+ +g++h +e+ +vf++   e ++          
  KKY20694.1 417 PATLKGRP--AADTAYGSQFKRAAAYGGDLYMHAGRRLTNQMWAKYQVSSYSYHFNVLV--NGVPAEIGATHFQEVIFVFHNLNGEGYNnsvsvnpfan 511
                 44444443..56666666677788999****************************8877..55699****************99999999999*98542 PP

                 S-HH.HHHHHHHHHHHHHHHHHHSSTTS..TTSS----B.TTTBEEEEESSSSS CS
  COesterase 448 ftke.deklsrkmmtywtnFaktgnPnk..eeeekWpkytkeeekylkinlkpk 498
                 +      +l+  m+++w +F++  +Pn+   + ++Wp yt ++ k + ++ + +
  KKY20694.1 512 EP-PtFTQLATLMSRMWISFVNDLDPNNsgVSCVHWPVYTLDDPKNIVFDVNVT 564
                 22.23578********************888899*****888888777776655 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.5e-06     0.014       1      83 [.     136     251 ..     136     272 .. 0.66
   2 ?   -2.7   0.0      0.49   4.4e+03      79     131 ..     391     446 ..     390     474 .. 0.49
   3 ?   -3.1   0.0      0.65   5.8e+03     163     185 ..     558     580 ..     507     583 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-06
                    EEEE--STTTS--TTTT...HHHH..HHHHHHHTSEEEEEE---TT...........TS-TTHHHHHHHHHHHHHHHTH................. CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldth...dalc..relakelgavvvsvdYrlAP...........ehpfPaavedalaalrwlaeqa................. 63 
                    l+++HGGGf  g+++ +   ++++  +++ +++ +v+vs++Yrl+               +   + d   al+w++e+                  
     KKY20694.1 136 LFWIHGGGFFEGGSRDPrynQSFLvqQSVYARAPIVAVSINYRLSGwgflygnevaeAGVANIGLRDQRLALQWVQENIeafggdptkgnlvfsff 231
                    689*******7777666566666511345678889999******8522222111110112233445555666666666588888888888877654 PP

                    HHHTETTCEEEEEEETHHHH CS
  Abhydrolase_3  64 welgadpsrivlaGdSaGGn 83 
                        + p+ +v+ G+SaGGn
     KKY20694.1 232 IGNILTPTLVVIQGESAGGN 251
                    24447788899999999998 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.49
                    THHHHHHHHHHHHHHHTT---.....EEEEEEESE-SSTSSTTSHHHHHCHHT.TTSSS CS
  Abhydrolase_3  79 SaGGnlaaavalrardegepk.....vagqvliyPvtdlertesesikkaeel.adgpl 131
                    S G n++ a+a  +++   p      + +++   P+ d+    ++++k+a+++  d ++
     KKY20694.1 391 SSGTNISNATAATIAALY-PDipeigIPATLKGRPAADT--AYGSQFKRAAAYgGDLYM 446
                    777788777775555541.22223334455555555544..223444444444444333 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.65
                    SST---EEEEEETT-TTHHHHHH CS
  Abhydrolase_3 163 lsglpptlvvvaefDplrdegea 185
                    + ++  t ++ ae D++r eg++
     KKY20694.1 558 VFDVNVTNLAYAEADTFRAEGIQ 580
                    44455677788888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.52
# Mc/sec: 3446.09
//
Query:       KKY20695.1  [L=550]
Description: putative mfs quinate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-79  267.9  24.3    1.9e-79  267.6  24.3    1.0  1  Sugar_tr  Sugar (and other) transporter
    1.3e-16   60.5  27.7    6.2e-16   58.3  21.9    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.6  24.3   2.1e-83   1.9e-79       8     452 .]      37     508 ..      30     508 .. 0.91

  Alignments for each domain:
  == domain 1  score: 267.6 bits;  conditional E-value: 2.1e-83
                 HHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGG CS
    Sugar_tr   8 ggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevli 106
                  g   g d g+i+++ ++ +f+   ++++  +  ++  +  g +++++++G+++G+l+a  l+dr+GR ++    ++l ++g+v+  +      + +++
  KKY20695.1  37 MGAARGIDEGLISGTFNSKDFQDLLHFDELGDVAYA--SVKGNVTAMVQIGSVAGALLAFVLADRIGRLWAVRQLCILWIAGIVIFLTNG--GRLSQVY 131
                 567788999***********9999999999987775..999***************************************9999988777..56***** PP

                 GGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-..TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT CS
    Sugar_tr 107 vgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl.nktsn..adgwrillglqlvpallllilllflPESPrylvekg 202
                 +gR+++Gig+G ++v++P+yi+EiAp ++Rg ++ ++  a+ +Gi++a++  +g   ++++  ++ w ++  l +++a ++lil +f  ESPryl+++g
  KKY20695.1 132 AGRFIAGIGIGETTVIAPVYIAEIAPRSIRGLCTCVFAGAVYIGIMLAYFAVWGSsLHIDEnsSNSWVVPTTLHIMFAGIILILSFFNYESPRYLIKRG 230
                 *******************************************************777777999*********************************** PP

                 -HHHHHHHHHHHHHC....HHHHHHHHHHHHHHHHHHH..........HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH... CS
    Sugar_tr 203 keeeakevlaklrge....edadrelaeekdsleaeqeee.....kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks... 289
                 ++e a   la++rg     e +  e++++k++le+eqe++        ++e++ + ++++r+ +g+++qi+ q +G  +i+ y+p +f  +g + +   
  KKY20695.1 231 QDEHAIVNLARVRGLprdhEVVVSEIDDIKRQLEEEQEATmgqgiFGILREMFLMPNNFYRIYLGLGCQIWSQWSGAGSITVYAPDFFALVGTKGQnek 329
                 *************994444445555555555555555555999988999*********************************************9999* PP

                 HHHHHHHHHHHHHHHHHH.HHHHHHS-SHHHHHHHHHHHHHHHHHHH.....HHHHTTSS...........CHHHHHHHHHHHHHHHTTTTHHHHHHHH CS
    Sugar_tr 290 llvtiivgvvnfvatfva.iflvdrfGRRtllllGaagmaicfvilg...ivalllvaks........kaasivaivfialfialfalgwgpvpwvlvs 376
                 l +t+i+gvv+fva+++  +flvd +GR++ l +G++ +a ++v+++   +++  +++ +        k as +aiv+i++  +  a+gw+++ +++ s
  KKY20695.1 330 LFATAIFGVVKFVASIICaFFLVDVIGRKRALTIGITLQATAMVYIAsflTAVPNIES-EdfvftssqKQASTGAIVMIYVSGFGWAMGWNSIQYLINS 427
                 ************99876549***************************76333333333.269999999******************************* PP

                 HHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH.....T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 377 ElfpqsvRskalaiavavnwlanflisllfpiiteaig.....ggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 E++p+++R++ ++++++ +++ ++  s   p ++ + +     + ++f++fa++ vl+ ++ +f +pet+gr+le +++lf
  KKY20695.1 428 EIYPLRIRAISSSMVMCFHFVNQYGNSRAVPPMLLSTSqggltAQGTFWFFAAVTVLGGFWAWFSIPETAGRSLEAMDALF 508
                 ******************************999988888999999********************************9987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3  21.9   6.9e-20   6.2e-16      28     334 ..      58     434 ..      26     450 .. 0.70
   2 !    5.6   0.3   0.00069       6.2     149     179 ..     468     498 ..     456     527 .. 0.71

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 6.9e-20
       MFS_1  28 g...........ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslwlllvlrvlqGlgagalfpagaaliadw 113
                 +           + +s+ g +++++ +g+++++l++ +l+dr+Gr + +    +l+++g++++l +    l  ++++r+++G+g g  + ++ ++ia++
  KKY20695.1  58 QdllhfdelgdvAYASVKGNVTAMVQIGSVAGALLAFVLADRIGRLWAVRQLCILWIAGIVIFL-TngGRLSQVYAGRFIAGIGIGETTVIAPVYIAEI 155
                 24444555555555677888***************************88888888888834444.44455668************************** PP

       MFS_1 114 fpkeergraigllsagfslGailgpllggllasslg........Wravfyilaivsllafvlfllllpeepperkrkspkeee................ 188
                 +p++ rg+ + ++++++ +G++l++ +  + + sl         W ++  ++  ++ + ++l   ++   +++r   +  ++e                
  KKY20695.1 156 APRSIRGLCTCVFAGAVYIGIMLAYFA-VWGS-SLHidenssnsWVVPTTLHIMFAGIILIL--SFF-NYESPRYLIKRGQDEhaivnlarvrglprdh 249
                 *********************999333.2222.22234666788888888888888887664..555.4444444444444444778887777888888 PP

       MFS_1 189 ..............kgtgpaplvp.............awkallkdpvlw.illialllfffgfsg...lltllply..lqevlgls.glllaglllall 253
                               +        +             + +++l ++ ++ i+l   + ++  +sg   ++++ p +  l+ + g +   l a+++++++
  KKY20695.1 250 evvvseiddikrqlE--------EeqeatmgqgifgiLREMFLMPNNFYrIYLGLGCQIWSQWSGagsITVYAPDFfaLVGTKGQNeK-LFATAIFGVV 339
                 888888666665551........23333445565555667777777776666666666666666688899999998443444444432.4444455555 PP

       MFS_1 254 alvgailallagrls.drlgrrrrlllallllllaalglallavt................ssavllllvlvliGfglgfvfpsllalasdlappeea 334
                  +v+   ++++++++ d +gr+r+l++++ l ++a + +a + ++                + ++ +++++++ Gfg+++ + s+++l+++ + p + 
  KKY20695.1 340 KFVA---SIICAFFLvDVIGRKRALTIGITLQATAMVYIASFLTAvpniesedfvftssqkQASTGAIVMIYVSGFGWAMGWNSIQYLINSEIYPLRI 434
                 5555...666666666**********999999888888877777788*******9999998888888889999****************998755444 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.00069
       MFS_1 149 g..Wravfyilaivsllafvlfllllpeepper 179
                 g   +++f+++a+v++l++   ++++  ++++ 
  KKY20695.1 468 GltAQGTFWFFAAVTVLGGF--WAWFSIPETAG 498
                 344899************76..35555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3621.44
//
Query:       KKY20696.1  [L=562]
Description: putative phosphotransferase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-14   53.5   0.0    1.3e-13   51.5   0.0    1.8  1  APH       Phosphotransferase enzyme family
    7.7e-05   22.1   0.0      0.039   13.3   0.0    2.3  2  Kdo       Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0053   15.7   0.0      0.014   14.3   0.0    1.6  2  DUF1679   Protein of unknown function (DUF1679)
  ------ inclusion threshold ------
      0.038   13.4   0.0       0.11   11.9   0.0    1.6  2  Pkinase   Protein kinase domain


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   2.8e-17   1.3e-13       6     201 ..      84     354 ..      80     356 .. 0.67

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 2.8e-17
                 --.SSCEEEEEEETT.--EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-.B--B-CTTB.S-EEETTEEEEEEE----EE-SS...HHHHHHHHHHHH CS
         APH   6 sggasnrtylvttpa.gryvlrrnppa..raaeeirrevallrlLakagv.pvPevlagd.tddeeigllfalieyvpgrsllr...klsaaqlpelle 96 
                 + g +n+++l+t ++  ++v ++++     a+ ++++eva + +L++    pvP+vla+  ++ +    +f ++e   g +l++    l  a + +++e
  KKY20696.1  84 REGEYNKVFLLTMDNgAEVVAKVPNLNagPAHYTTASEVATMNYLREVLDvPVPRVLAWSsNSSNSVQSEFIIMEKAKGVILSDcwrDLARAAKNKIIE 182
                 5799***********56******9999889999*************66546******988455555555***************998888899999999 PP

                 HHHHHHCCHHCH..-STTTB-............................................................SHHCHTCCHHHHHHCHHH CS
         APH  97 algeflaalhqvd.paalpla............................................................dflaqdlellrqlesata 134
                 +++ ++  +++ + pa+  l+                                                             +l++   +++ ++++  
  KKY20696.1 183 QIVNLQLSFSSRAfPAHGCLFfkedvpaeklsfsnvpsdpsqrytigplvdptlwedgrnelnvhkgpwetlssyavdlgkNELEWVKSHAQPRMNYFY 281
                 999999988888744444444444444444444444444444555555554444444444444444444433333333333222222222222222222 PP

                 CCCGCCTCCHHHHHHHHHHHHHHHH--S.............SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEEC CS
         APH 135 rllaselldlleeleeqvlaalaallpg.............elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpp 201
                 + + +e++        ++l +l + l                + + l H+Dl++ N+ +dpd + +t++iD++ ++++p 
  KKY20696.1 282 DVRVPEQPS-------EALKTLGRYLSIvpyvtriteethyLQTRILSHRDLNSSNVFIDPDTNDITAIIDWQGSTIAPL 354
                 222222222.......23444444433366677777777779999*******************************9985 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   8.6e-06     0.039      57     147 ..     117     205 ..     108     206 .. 0.86
   2 !    6.4   0.0    0.0012       5.2     127     165 ..     309     345 ..     304     351 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.6e-06
         Kdo  57 ravrEfrllkrLeea.gvavpkpvaagavkvgleyrAlllterlegaqdLedllakwaelaeelkrallkavgrliaklhragv.nHadlyak 147
                 + + E++ ++ L+e+  v+vp+ +a   + ++  +  ++++e+ +g++ L d+ ++   la + k+++++++  l   + ++    H++l+ k
  KKY20696.1 117 TTASEVATMNYLREVlDVPVPRVLAWSSNSSNSVQSEFIIMEKAKGVI-LSDCWRD---LARAAKNKIIEQIVNLQLSFSSRAFpAHGCLFFK 205
                 56789*******99549*****************************98.9999887...99***********999888876554389999765 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0012
         Kdo 127 vgrliaklhragvnHadlyaknillqqeeeeeaeiwliD 165
                 +    + l  + + H+dl+  n++++ +   +   ++iD
  KKY20696.1 309 ITEETHYLQTRILSHRDLNSSNVFIDPDT--NDITAIID 345
                 55555667777789*************98..55556677 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.38   1.7e+03     116     185 ..     121     188 ..     118     193 .. 0.77
   2 !   14.3   0.0   3.1e-06     0.014     233     304 ..     285     352 ..     264     357 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.38
     DUF1679 116 EvelYkileklnheeilltkvyflkkfdeenklkgyiimeyvedihtlsmyenikadelipvlkaiAtlq 185
                 Ev++ ++l+++   +++++ v++ ++  +++    +iime  +++    + + +      ++++ i +lq
  KKY20696.1 121 EVATMNYLREVL--DVPVPRVLAWSSNSSNSVQSEFIIMEKAKGVILSDCWRDLARAAKNKIIEQIVNLQ 188
                 778888887774..89999999999998888889999999998888877777777666666666666665 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 3.1e-06
     DUF1679 233 eeekveelvdiveeylkeililekaskvskvlGi..kkvlvhgDlwsaNiLfseeeegklklkkviDyQlvslg 304
                  +e+ +e+++++ +y   + i+  ++++ +   +    +l h+Dl s+N++   +++    ++++iD+Q  +++
  KKY20696.1 285 VPEQPSEALKTLGRY---LSIVPYVTRITEETHYlqTRILSHRDLNSSNVFIDPDTN---DITAIIDWQGSTIA 352
                 566666777777777...666666677766666655789***************998...89*******98765 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.62   2.8e+03      10      56 ..      86     129 ..      85     186 .. 0.51
   2 ?   11.9   0.0   2.4e-05      0.11     103     143 ..     305     347 ..     296     358 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.62
                 ESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS CS
     Pkinase  10 GsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk 56 
                 G++ kV+  +  ++g +v+ K+ + +        ++++E++ ++ l+
  KKY20696.1  86 GEYNKVFLLT-MDNGAEVVAKVPNLNAGPAHY--TTASEVATMNYLR 129
                 7777777777.577777777766665544433..4666666665555 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.4e-05
                 HHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTE.EEE-SGT CS
     Pkinase 103 iakqilegleylHskgiiHrDlKpeNiLid.ekge.lKitDFG 143
                 ++++i e  +yl  + + HrDl ++N++id ++++   i+D+ 
  KKY20696.1 305 YVTRITEETHYLQTRILSHRDLNSSNVFIDpDTNDiTAIIDWQ 347
                 67788888899*9*****************6555567899985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 3755.37
//
Query:       KKY20746.1  [L=527]
Description: putative c2h2 type zinc finger containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-37  126.8  12.2    2.9e-30  104.6   2.3    3.6  3  zf-C2H2_2        C2H2 type zinc-finger (2 copies)
    3.6e-08   33.5   5.9    7.8e-06   26.0   3.5    3.9  4  zf-C2H2_jaz      Zinc-finger double-stranded RNA-binding
    2.1e-06   27.9   8.4    2.7e-05   24.4   2.0    3.0  2  zf-met           Zinc-finger of C2H2 type
  ------ inclusion threshold ------
      0.054   14.1   0.1       0.12   13.0   0.1    1.6  1  SnoaL_2          SnoaL-like domain
      0.099   12.2   0.7        2.6    7.6   0.1    2.2  2  Cytochrome-c551  Photosystem P840 reaction-centre cytochrome 
        4.5    8.4  25.2        1.2   10.2   0.1    5.2  5  zf-C2H2_4        C2H2-type zinc finger
          6    6.8   6.9        1.5    8.7   0.9    2.8  3  DUF2024          Domain of unknown function (DUF2024)


Domain annotation for each model (and alignments):
>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   8.4e-05      0.21      51      77 ..      15      41 ..       8      49 .. 0.88
   2 !   15.2   0.2   7.9e-06      0.02      35      78 ..      64     107 ..      56     122 .. 0.80
   3 !  104.6   2.3   1.1e-33   2.9e-30       2      99 ..     196     292 ..     194     294 .. 0.97

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.4e-05
   zf-C2H2_2 51 leClyCekefkslealreHmkkkgHck 77
                ++C  C+  f+s ea r Hm++  H+ 
  KKY20746.1 15 YTCNSCQVAFRSSEAQRGHMRSDWHRY 41
                68*********************9976 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 7.9e-06
   zf-C2H2_2  35 dleglleylrekieekleClyCekefkslealreHmkkkgHcki 78 
                 +++  ++    k + + +C  C+k+  s +a+++H+ +++H+  
  KKY20746.1  64 TAQATTNAAAAKASFQKTCTACQKTYFSENAYENHIGSQKHKLK 107
                 55666777778888899********77**************975 PP

  == domain 3  score: 104.6 bits;  conditional E-value: 1.1e-33
   zf-C2H2_2   2 ClfcekkskeveellehmskkhgffipereylvdleglleylrekieekleClyCekefkslealreHmkkkgHckineeeeeekkeiekfydflskd 99 
                 Clfc+  s +v   + hmsk hg+fipe++yl+d+egll+yl+ ki+e++eClyC+k + +++ +++Hm++kgHc+i+ e+eee+ ei +fydf +++
  KKY20746.1 196 CLFCNYDSPTVPLSVLHMSKFHGLFIPEQKYLADMEGLLQYLQAKIHENNECLYCHKLKGTTSGVQTHMRDKGHCMIAFETEEEMIEIGQFYDF-RST 292
                 **********************************************************99**********************************.555 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.5e-06     0.012       2      27 .]      15      40 ..      14      40 .. 0.95
   2 !   26.0   3.5     3e-09   7.8e-06       3      27 .]      81     105 ..      79     105 .. 0.95
   3 ?   -3.9   0.5         7   1.8e+04       4       8 ..     196     200 ..     195     201 .. 0.86
   4 ?   -0.5   0.3      0.64   1.6e+03       3       9 ..     246     252 ..     245     269 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.5e-06
                 CBBTTTTBBBSSHHHHHCCTTSHHHH CS
  zf-C2H2_jaz  2 fYCvlCdKyFksenaldnHlkSKkHK 27
                 + C  C+  F s++a + H++S +H+
   KKY20746.1 15 YTCNSCQVAFRSSEAQRGHMRSDWHR 40
                 78***********************7 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 3e-09
                  BBTTTTBBBSSHHHHHCCTTSHHHH CS
  zf-C2H2_jaz   3 YCvlCdKyFksenaldnHlkSKkHK 27 
                   C +C+K++ sena++nH+ S kHK
   KKY20746.1  81 TCTACQKTYFSENAYENHIGSQKHK 105
                  6***********************9 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 7
                  BTTTT CS
  zf-C2H2_jaz   4 CvlCd 8  
                  C  C+
   KKY20746.1 196 CLFCN 200
                  999*8 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.64
                  BBTTTTB CS
  zf-C2H2_jaz   3 YCvlCdK 9  
                  +C +C K
   KKY20746.1 246 ECLYCHK 252
                  5899988 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.5     0.006        15       1      25 []      15      39 ..      15      39 .. 0.88
   2 !   24.4   2.0     1e-08   2.7e-05       2      25 .]      81     104 ..      80     104 .. 0.97

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.006
      zf-met  1 fyCelCnvtfnsesqlksHlqGKkH 25
                ++C+ C+v f s  + + H+++  H
  KKY20746.1 15 YTCNSCQVAFRSSEAQRGHMRSDWH 39
                89**********9999999998655 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 1e-08
      zf-met   2 yCelCnvtfnsesqlksHlqGKkH 25 
                 +C +C++t+ se+++++H  ++kH
  KKY20746.1  81 TCTACQKTYFSENAYENHIGSQKH 104
                 7*********************** PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   4.7e-05      0.12      13      56 ..     380     423 ..     370     464 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.7e-05
                 HHHHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEE CS
     SnoaL_2  13 ldalaalfapdvvwedpggelrGreairaffralfaafpdlrfe 56 
                  +  +a f++ ++++ p g++ G+  +r++fr+ + ++p+ + +
  KKY20746.1 380 HSHNRAAFHDGYELHLPSGRTAGHRSLRRYFRQNLHNYPTPEER 423
                 5555789**************************99988876555 PP

>> Cytochrome-c551  Photosystem P840 reaction-centre cytochrome c-551
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1     0.001       2.6     129     167 ..      58      96 ..      33     130 .. 0.72
   2 ?    2.8   0.0     0.029        74     144     176 ..     238     270 ..     212     281 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.001
                      XX-SS----TT--HHHHHHHHHHHTTSSS-SHHHHHHHH CS
  Cytochrome-c551 129 aaedvlvapaGedlaaakklvdrrcnkchalkavedklr 167
                        e+vl+a a ++ aaak+ +++ c+ c      e++ +
       KKY20746.1  58 FNEKVLTAQATTNAAAAKASFQKTCTACQKTYFSENAYE 96 
                      568999**********************87654444443 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.029
                      HHHHHHHHHTTSSS-SHHHHHHHHHHTTTTT-H CS
  Cytochrome-c551 144 aakklvdrrcnkchalkavedklrtkykkkGkv 176
                      +ak   ++ c  ch lk   + ++t+ + kG+ 
       KKY20746.1 238 QAKIHENNECLYCHKLKGTTSGVQTHMRDKGHC 270
                      577777899********************9986 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00045       1.2       1      22 [.      15      36 ..      15      38 .. 0.91
   2 ?    9.1   0.1     0.001       2.6       2      20 ..      81      99 ..      80     103 .. 0.90
   3 ?    2.1   0.7      0.19   4.8e+02       2      24 .]     195     217 ..     194     217 .. 0.84
   4 ?    4.2   0.3     0.037        96       2      21 ..     246     265 ..     245     267 .. 0.92
   5 ?   -6.1   2.9         7   1.8e+04      14      24 .]     353     361 ..     350     361 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00045
   zf-C2H2_4  1 fkCpiCgksFsskkaLlrHlkt 22
                ++C  C+  F+s++a + H+++
  KKY20746.1 15 YTCNSCQVAFRSSEAQRGHMRS 36
                89*************777**97 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.001
   zf-C2H2_4  2 kCpiCgksFsskkaLlrHl 20
                +C+ C+k++ s +a+ +H+
  KKY20746.1 81 TCTACQKTYFSENAYENHI 99
                7*****************8 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.19
   zf-C2H2_4   2 kCpiCgksFsskka.Llr.HlkthH 24 
                 +C +C  ++ s++  L+  H+ + H
  KKY20746.1 195 RCLFC--NYDSPTVpLSVlHMSKFH 217
                 69999..998888899888999887 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.037
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlk 21 
                 +C +C+k   + +++++H++
  KKY20746.1 246 ECLYCHKLKGTTSGVQTHMR 265
                 6******************8 PP

  == domain 5  score: -6.1 bits;  conditional E-value: 7
   zf-C2H2_4  14 kaLlrHlkthH 24 
                 ++L +H  +hH
  KKY20746.1 353 SKLANH--RHH 361
                 567788..666 PP

>> DUF2024  Domain of unknown function (DUF2024)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.3       1.7   4.4e+03      51      67 ..      78      94 ..      63     106 .. 0.65
   2 ?    0.1   0.0       0.3   7.7e+02      48      62 ..     189     203 ..     180     224 .. 0.69
   3 ?    8.7   0.9   0.00059       1.5      51      79 ..     243     272 ..     224     274 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.7
                -TTTEEEEEEEE--HHH CS
     DUF2024 51 tskeCkfCHseeaeeev 67
                 +k+C+ C  + ++e+ 
  KKY20746.1 78 FQKTCTACQKTYFSENA 94
                57888888877665543 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.3
                 S---TTTEEEEEEEE CS
     DUF2024  48 akvtskeCkfCHsee 62 
                 +++  ++C fC  ++
  KKY20746.1 189 ENIPLSRCLFCNYDS 203
                 678889*****8874 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00059
                 -TTTEEEEEEE.E--HHHHHHHHHHSEEEE CS
     DUF2024  51 tskeCkfCHse.eaeeeveeaikkqGyyii 79 
                 +++eC +CH    +++ v+++++ +G+ +i
  KKY20746.1 243 ENNECLYCHKLkGTTSGVQTHMRDKGHCMI 272
                 5689*****861577889********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2270  (0.126611); expected 358.6 (0.02)
Passed bias filter:                      648  (0.0361426); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 3780.49
//
Query:       KKY20747.1  [L=1268]
Description: putative hect domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-74  248.6   0.0    2.4e-73  247.3   0.0    1.7  1  HECT      HECT-domain (ubiquitin-transferase)
    0.00037   20.7   0.3    0.00082   19.6   0.3    1.6  1  AZUL      Amino-terminal Zinc-binding domain of ubiquitin lig


Domain annotation for each model (and alignments):
>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.3   0.0   2.6e-77   2.4e-73       3     306 ..     897    1267 ..     895    1268 .] 0.91

  Alignments for each domain:
  == domain 1  score: 247.3 bits;  conditional E-value: 2.6e-77
                  HHHHHT-GGGSSEEESSTTSSSEEE-TTHHHHS....HHHHHHHHHHHHHTT--BSS-B-HHHHHHHTT-.---TCHHHHH-HHHHHHHHHHH..HS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT    3 lskelldpklglfeeesedsgtlypkpssseeellklfeflGkvlGkaiyeeilldlpfsraflkfllgeekitledleeidpelakslkellsles 99  
                  + +e+l+p+lg+f+  +++++  +++p s e+  l +fe+lG ++++aiy++++l+++f+ a++++llg +  +l+++ +  pel+k l+ ll++++
  KKY20747.1  897 VFAEALNPDLGMFT-IDSRTRMTWFQPGSPEQ--LYKFEVLGLLMSLAIYNSVTLPVTFPLALYRKLLGLKVKKLDHIGDGWPELTKGLHDLLEWSD 990 
                  67899********5.58899999999986553..458********************************6444555555556***********9977 PP

                  -GGG...GT-...BSEEEE.........................................................................ETTEE CS
                  xxxxxxxxxx...xxxxxx.........................................................................xxxxx RF
        HECT  100 nteevedlaL...tFtipe.........................................................................nagas 120 
                   +  v d+ L   +Ft+++                                                                          + ++
  KKY20747.1  991 GD--VGDIFLrtyEFTYEFagqqtsvdmeavdkysewppkrrnkgkgkaksasfvfspadqmidtnwahnpqfhlseddepftlssilhrpsRLPEA 1085
                  76..9***999777886669999************************************99999999999999999999999999999888523333 PP

                  EEEESSTTGGGSB--TTTHHHHHHHHHHHHHTGGGHHHHHHHHHHHHTTS-HHHHTTS-HHHHHHHHBCSSS.--HHHHHHTEEEETT--TTSHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT  121 atieLipnGanipVtnenkkeYiklyvnyllkksvekqleaflkGfsevipskalklfdaeelellisGedelidvedlrrnteykggynaesetie 217 
                    +  ++  +   Vtnen+++Y+k y+ +l++ks+++q+eaf +Gf+++++++al++f+++ l+++++G +e id++ l++ t+y++g++++++ i+
  KKY20747.1 1086 SDWSTVEAPEASLVTNENRAQYVKDYIFWLTDKSIRPQYEAFARGFYTCLDRTALSIFTPDALKSVVEGIQE-IDIQGLKEATRYEDGFERDQPFIQ 1181
                  36667899999************************************************************9.************************ PP

                  HHHHHHHHS-HHHHHHHHHHHHSSSS--TTCGGG-B--EEEEE-S..-TTS--EEEGGGTEEEE---SSHHHHHHHHHHHHHHHH--XX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT  218 wlweilkefspeekrlfLqFvTgssrlPlgGfaelhpkftierkskedetrLPtahTCfnlLklpdYsskeilkekLltAieetegFel 306 
                   lw+++++f+ +++r++L+FvT+s+r+P++G++++   f+i+r++ +++ rLPt++TCf +L lp+YsskeilkekL  Aie+++gF+ 
  KKY20747.1 1182 DLWNVIQGFTVDQQRQLLEFVTASDRVPVNGIKSI--MFVIQRNG-DSDLRLPTSMTCFGRLLLPQYSSKEILKEKLVKAIENSKGFGA 1267
                  ***********************************..******88.999**************************************85 PP

>> AZUL  Amino-terminal Zinc-binding domain of ubiquitin ligase E3A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.3   9.2e-08   0.00082      31      59 .]      61      90 ..      50      90 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 9.2e-08
        AZUL 31 kapvrrltpnsAaalAleLakqde.eagLC 59
                    r++tp+sA+a+A+ L+++ + eagLC
  KKY20747.1 61 ALIRRKYTPLSARAIACFLVSERDpEAGLC 90
                345689************************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.36s 00:00:01.22 Elapsed: 00:00:00.51
# Mc/sec: 7418.04
//
Query:       KKY20748.1  [L=320]
Description: putative phosphoglycerate mutase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-14   53.7   0.0    7.8e-14   51.8   0.0    1.9  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   4.3e-18   7.8e-14       3     166 ..       7     190 ..       5     208 .. 0.79

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 4.3e-18
                 EEE---BTTB--....TT----B-HHHHHHHHHHHHHHTT.S---EEEE-SSHHHHHHHHHHHHCTT....--EEE-GGGS-.....---GGGTT-B.H CS
  His_Phos_1   3 LvRHGetewnaegrlqgrtdvpLteeGreqAealaerlag.epidaiysSplkRarqTaeliaealg....lpveldegLrE.....idfGdwegltta 91 
                  +RH++  +n +      +d+ Lt++G+eq + la+++    +i+++++Spl+R++ Ta l ++       l+v+  ++L+E     +d G      ++
  KKY20748.1   7 CIRHAQGYHNLNTANHSIQDPLLTPLGEEQCAILAKAFPYqDRISRVVASPLRRTIYTALLSLDPAIsskkLTVIALPELQEtsdvpCDTGSNPDVLRK 105
                 69**********999**********************998789****************887765545666***********43333367777777777 PP

                 HHHHH..H.SHHHHHHHHH-GGG-B...S-BHHHHHHHHHHHHH.......HHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGGG CS
  His_Phos_1  92 eiaeeype.eleawlrdpadvrppg...gEsledvaaRvaaale.......elaarhegetvlvVsHggvirallarllglpleel 166
                 ei+e+    +l   +++++d +  g     + +++ aR+++a         e++++ e+++v++VsHgg +++++ ++ +  ++++
  KKY20748.1 106 EIDEKKLPvDLSLVKDGWND-KSMGtkwAPTSRAISARAKDARIwlrnlaaEMVKNGEEGDVVMVSHGGYLHYFTEDWEDSGVHAA 190
                 77776444044444444444.444447778889999999887666667777999999********************998777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1971.32
//
Query:       KKY20749.1  [L=548]
Description: putative t-complex protein 1 subunit epsilon [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     3e-162  540.7   5.4   3.5e-162  540.5   5.4    1.0  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
      0.093   12.6   0.2        3.3    7.5   0.1    2.9  3  CPT         Chloramphenicol phosphotransferase-like protein


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  540.5   5.4  3.9e-166  3.5e-162       1     489 [.      49     541 ..      49     543 .. 0.98

  Alignments for each domain:
  == domain 1  score: 540.5 bits;  conditional E-value: 3.9e-166
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekale 99 
                 +a+ivkt+lGP+G+dK+l+++ g+++vTnDGatil ++ei++++akllve+++sqdee+GDGTt vv+La++Lle+a++li++g+hp++i +gy++a+e
  KKY20749.1  49 VANIVKTSLGPRGLDKILISPDGDITVTNDGATILAQMEITNHVAKLLVELSKSQDEEIGDGTTGVVVLASALLEQAADLIDKGIHPIRIADGYDHACE 147
                 689************************************************************************************************ PP

                 HHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCS.EECSCCCEECCCCEECECTTSEEESEEEESS--SSTTSSC CS
  Cpn60_TCP1 100 kaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAvklieene.keldlgrikvvkieggsledselveGlvldkgvlspdmpk 197
                  a+ +L++i+ ei+ +++d+e+L kva+tsl+sk++sk+ ++++k++vdAv+++ + e k++d++ ikv  + ggsleds lv+G+++dk++++p+mp 
  KKY20749.1 148 VAVAHLDKISDEIPFSKEDTENLHKVAKTSLGSKIVSKSHDQFAKIAVDAVLSVADLErKDVDFELIKVDGKVGGSLEDSVLVKGVIIDKDFSHPQMPS 246
                 ***************************************************55555555**************************************** PP

                 EEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S--HHHHHHHHHHHT-- CS
  Cpn60_TCP1 198 klenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrvkkkdlerlakatGat 296
                 ++++ak+++l++ +e++k++tk+++++++++e+++l+  e++++ e++++i+++g+nvv+cq+g+dd+a+h+l +n++ a+r+v   ++e +a+at+++
  KKY20749.1 247 EVRDAKLAILTCAFEPPKPKTKHKLDITSVDEFKRLQAYEKNKFTEMVQQIKDTGANVVICQWGFDDEANHLLLQNKLPAVRWVGGPEIELIAIATNGR 345
                 *************************************************************************************************** PP

                 EBSCGGGGGCGC-EEEEEEEECCETT..CCEEEEECESSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCCCCT CS
  Cpn60_TCP1 297 avssledltpeelGtakkveeekigs..ekttiieevksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkeyaks 393
                 +v ++edl+  +lGta+ v+e ++g+  ek+++iee+++ +++t+ +rg++++++de++r+++dAl+vv+n+++d++vv+GGGa+e++++ +++e+a++
  KKY20749.1 346 IVPRFEDLSTAKLGTAGVVREMTFGTtrEKMLVIEECANTRAVTVFVRGSNKMIIDEAKRSLHDALCVVRNLVRDNRVVYGGGAAEIACSLAVEEKASE 444
                 ************************98779********************************************************************** PP

                 SXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHH.HTTXTTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEEEEXX CS
  Cpn60_TCP1 394 vsgeeqlaieafakALevipktLaeNaGldpievlaklraah.nkgekelgidvesgeiidlveagvvDplkvkrqalksAteaastiLrideiika 489
                  +g eq+a++afa+AL ++p++LaeN+Gl+pie+la+++++h ++++  lg+d+ s    d+ ++ v+Dpl  krq l +At++ ++iL+i+++i a
  KKY20749.1 445 SPGLEQYAMRAFADALDAVPMALAENSGLSPIETLASIKSRHvQEKNSRLGVDCMSTGSNDMRQHFVIDPLIGKRQQLLLATQLCRMILKINNVIIA 541
                 ******************************************7444569**********************************************87 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.05   4.5e+02      14      52 ..     175     213 ..     171     235 .. 0.77
   2 ?   -0.3   0.0     0.096   8.6e+02      69      97 ..     287     315 ..     250     332 .. 0.71
   3 ?    7.5   0.1   0.00037       3.3      63     122 ..     375     434 ..     351     459 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.05
                 HHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSE CS
         CPT  14 KsslaralqevldepwlhlgvDafvealppkrqdeadgl 52 
                 K+sl   + + +++ + +++vDa +     +r+d + +l
  KKY20749.1 175 KTSLGSKIVSKSHDQFAKIAVDAVLSVADLERKDVDFEL 213
                 99*********************9997666666655544 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.096
                 HHHHHHHHHHHHHTT-EEEEEE--TTTHH CS
         CPT  69 laalyeavaamaraGnnvivDdvilekew 97 
                  + ++e v+ + ++G+nv++ +   + e+
  KKY20749.1 287 KNKFTEMVQQIKDTGANVVICQWGFDDEA 315
                 5668899999*********9876666664 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.00037
                 HHHHHHHHHHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHH CS
         CPT  63 peldlllaalyeavaamaraGnnvivDdvilekewlvdllrrllsgldvllVGvrcplev 122
                 ++l   + a ++av  + r  n++i+D++  + +++  ++r+l+++ +v++ G  ++++ 
  KKY20749.1 375 KMLVIEECANTRAVTVFVRGSNKMIIDEAKRSLHDALCVVRNLVRDNRVVYGGGAAEIAC 434
                 555566678899******************999999999***********9985544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.54
# Mc/sec: 3036.38
//
Query:       KKY20750.1  [L=210]
Description: putative heterochromatin protein hp1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-11   43.7   0.2    1.3e-10   41.1   0.0    2.2  2  Chromo_shadow  Chromo shadow domain
    3.7e-11   42.8   1.7    7.4e-11   41.8   1.7    1.6  1  Chromo         Chromo (CHRromatin Organisation MOdifier) doma
  ------ inclusion threshold ------
          6    7.7  10.7        6.8    7.5   0.9    2.7  2  ELM2           ELM2 domain


Domain annotation for each model (and alignments):
>> Chromo_shadow  Chromo shadow domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.19   1.1e+03       1      25 [.      61      85 ..      61      96 .. 0.81
   2 !   41.1   0.0   2.3e-14   1.3e-10       1      51 [.     156     210 .]     156     210 .] 0.91

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.19
                   TTTTTEEEEEETS-EEEEEEETTS- CS
  Chromo_shadow  1 epekiigavdtsgelmflikWknge 25
                   e+e i+++  ++ ++   ikW + e
     KKY20750.1 61 EIESILEHRVRRNKIELKIKWVGYE 85
                   5788888888888999999997755 PP

  == domain 2  score: 41.1 bits;  conditional E-value: 2.3e-14
                    TTTTTEEEEEE.....TS-EEEEEEETTS-EEE.EEHHHHHHHSHHHHHHHHHCT- CS
  Chromo_shadow   1 epekiigavdt.....sgelmflikWkngekaelvpskeanqkcPqkvikFYEerl 51 
                    ++++ i  v       +g+l +l  +kng++++ v +++a+q++Pq ++++YE++l
     KKY20750.1 156 SWDREIAEVSGlerlpDGQLQVLAIFKNGHNTK-VTNEIAYQRFPQTMLRYYESKL 210
                    57777777766778889****************.********************97 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   1.7   1.2e-14   7.4e-11       1      53 [.      60     111 ..      60     112 .. 0.94

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1.2e-14
                 EEEEEEEEEEEETTEECEEEEEEETTSTGGGT.EEEEGGGCSSHSHHHHHHHHH CS
      Chromo   1 yeVerIidhrtdkdgleleYlVKWkglpysen.tWEpeenlekcfqelideFkk 53 
                 +e+e I+ hr+++++   e ++KW g+  +e+ tWEpeenle+ +  l+ e+ +
  KKY20750.1  60 FEIESILEHRVRRNKI--ELKIKWVGYENEEDqTWEPEENLEESSAGLLAEYYQ 111
                 69**************..***********9999***********9999999976 PP

>> ELM2  ELM2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   3.1     0.014        82      31      43 ..      85     102 ..      38     113 .. 0.70
   2 ?    7.5   0.9    0.0011       6.8       8      45 ..     126     162 ..     126     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.014
        ELM2  31 k.....vWdPdhnlndrd 43 
                 +     +W+P++nl ++ 
  KKY20750.1  85 EneedqTWEPEENLEESS 102
                 0333339***99999876 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0011
        ELM2   8 QAeiPdllepeereakeeeekeakvWdPdhnlndrdid 45 
                 QA+ P++  +++r+++   e++ k W P+    dr+i 
  KKY20750.1 126 QADKPEVERASKRQKRT-PEELPKDWVPKGASWDREIA 162
                 9*****99999888875.5555579***8887787775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1355.89
//
Query:       KKY20751.1  [L=656]
Description: putative transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      8e-19   67.6   0.8    2.8e-17   62.6   0.1    2.5  2  Myb_DNA-bind_2  Rap1 Myb domain
    2.3e-15   56.5   0.2    8.3e-15   54.7   0.0    2.0  2  Rap1_C          TRF2-interacting telomeric protein/Rap1 - C t
    2.1e-09   37.7   0.0    8.3e-09   35.7   0.0    2.0  2  BRCT_2          BRCT domain, a BRCA1 C-terminus domain
  ------ inclusion threshold ------
      0.021   15.4   0.0      0.021   15.4   0.0    2.9  4  Rap1-DNA-bind   Rap1, DNA-binding


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_2  Rap1 Myb domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.1   6.3e-21   2.8e-17       2      56 ..     110     163 ..     109     166 .. 0.98
   2 ?    3.0   0.1     0.026   1.2e+02       3      50 ..     200     247 ..     198     261 .. 0.72

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 6.3e-21
  Myb_DNA-bind_2   2 RlpyteeeDaailkyvkekerspasvkGnkiwkelekkhltrHsWQslkdRylkr 56 
                     R+p+t+ +D+ ++++vk  e ++ sv+Gnki++++e+ ++ rH+ Qs++dR+lk+
      KKY20751.1 110 RTPFTASDDQFLYDWVKPIEDAGGSVSGNKIYQDIEAANP-RHTFQSWRDRWLKH 163
                     9***************************************.*************9 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.026
  Myb_DNA-bind_2   3 lpyteeeDaailkyvkekersp.asvkGnkiwkelekk.hltrHsWQslk 50 
                     +p+tee+  +++++ k+ +     ++ G   w++++ +    +H+ Q ++
      KKY20751.1 200 TPFTEEDALLLMNAAKHIANLDpEKAPGA--WRKFATStDFSHHTDQEWQ 247
                     79999888888899998776442777775..9999875145677777665 PP

>> Rap1_C  TRF2-interacting telomeric protein/Rap1 - C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.2   5.4e+03      48      80 ..     113     160 ..     107     160 .. 0.77
   2 !   54.7   0.0   1.8e-18   8.3e-15      26      82 ..     595     651 ..     579     653 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.2
      Rap1_C  48 WteedDeaL...............kagderdlerlekkhgeerierRr 80 
                 +t++dD+ L               +++  +d+e  +  h+ ++ + R+
  KKY20751.1 113 FTASDDQFLydwvkpiedaggsvsGNKIYQDIEAANPRHTFQSWRDRW 160
                 689999999888888888887776667777788888888777777776 PP

  == domain 2  score: 54.7 bits;  conditional E-value: 1.8e-18
      Rap1_C  26 lanyvlealkrgkglpknkrGiWteedDeaLkagderdlerlekkhgeerierRrkF 82 
                 la  v + lk+gk+ p+n rGiWte dD++L agd+r+++r+ kkhg+e+ie R++ 
  KKY20751.1 595 LADIVFNNLKSGKHPPDNIRGIWTEDDDRDLLAGDARAVDRVRKKHGDEGIEGRWEV 651
                 67788899***********************************************85 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.9e-12   8.3e-09       3      84 ..      13      87 ..      11      88 .. 0.91
   2 ?   -1.8   0.0      0.96   4.3e+03      25      40 ..     125     148 ..     118     188 .. 0.64

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1.9e-12
      BRCT_2  3 klFeglrFYindaepspsreklkklIeknGGevvetitsavyiviaesneeelaekrkrrvvspkyIkdCikkgkllpleny 84
                 lF+gl+F++  +++ p+r+++ + I++nGG+vv+ +++a++ ++ +       ++  +++ s++++++++++ +l ++en+
  KKY20751.1 13 PLFNGLKFWL--SHQVPQRSQFISEIKENGGHVVDLEKNADIKIVDHVR-----KQLPPGACSYRFLEESVQNHQLAEIENH 87
                69********..6888*********************999888888876.....678**********************997 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.96
      BRCT_2  25 kklIeknGGevveti........t 40 
                  k Ie+ GG v+ +         +
  KKY20751.1 125 VKPIEDAGGSVSGNKiyqdieaaN 148
                 567999999996655344444441 PP

>> Rap1-DNA-bind  Rap1, DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   4.7e-06     0.021      52      76 ..     138     162 ..      76     169 .. 0.80
   2 ?   -2.2   0.1       1.4   6.5e+03      64      71 ..     240     247 ..     203     273 .. 0.74
   3 ?   -3.6   0.1       3.7   1.6e+04      28      55 ..     320     347 ..     310     358 .. 0.46
   4 ?   -2.7   0.2         2   8.8e+03      24      36 ..     400     412 ..     384     434 .. 0.43

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.7e-06
  Rap1-DNA-bind  52 refFkelakkkprHtensWrdryrK 76 
                     ++++++ +++prHt +sWrdr+ K
     KKY20751.1 138 NKIYQDIEAANPRHTFQSWRDRWLK 162
                    56889999**************988 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
  Rap1-DNA-bind  64 rHtensWr 71 
                    +Ht ++W+
     KKY20751.1 240 HHTDQEWQ 247
                    57777775 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 3.7
  Rap1-DNA-bind  28 dtgeslikdedlkellakrkltvarefF 55 
                     +++++i++ ++    a++ +t +  fF
     KKY20751.1 320 IESQKEINQLEAAPQPASHVDTGSSLFF 347
                    3333333333333333333333333344 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 2
  Rap1-DNA-bind  24 qkdpdtgeslikd 36 
                    ++++  g++++++
     KKY20751.1 400 SASEALGKEQSST 412
                    2222222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1140  (0.0635841); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4452.33
//
Query:       KKY20752.1  [L=128]
Description: putative cytochrome b5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-23   81.5   0.1    5.1e-23   81.0   0.1    1.2  1  Cyt-b5    Cytochrome b5-like Heme/Steroid binding domain
  ------ inclusion threshold ------
      0.043   13.8   0.0      0.048   13.7   0.0    1.3  1  DUF4366   Domain of unknown function (DUF4366)


Domain annotation for each model (and alignments):
>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.1   5.7e-27   5.1e-23       1      69 [.       7      74 ..       7      79 .. 0.93

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 5.7e-27
                EHHHHTTTECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHGGE CS
      Cyt-b5  1 tleelskhngkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkkyl 69
                t +e+s+hn+k+d++++i++kVYD ++f+++hpGge+++l+  G+Dateaf++v hs++ a+++l+ +l
  KKY20752.1  7 TYAEVSEHNTKKDCYMVIHDKVYDTTSFVDEHPGGEEVLLDVGGQDATEAFEDVGHSDE-AREILEGLL 74
                579*****************************************************999.899988765 PP

>> DUF4366  Domain of unknown function (DUF4366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.3e-06     0.048      95     145 ..      76     125 ..       3     126 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.3e-06
     DUF4366  95 eepepekeaepeepeeepekksnnglllvvlavaligggaayyfkvlkpkk 145
                   p+p+++a+ +++++++++    ++ + + a++ligg+aay   ++  k+
  KKY20752.1  76 GDPAPSAAAQATATSSTNDSA-AVTFGVGLYALILIGGAAAYAAYTYLGKQ 125
                 456666666665555555554.4677778889999*****99999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.32s 00:00:00.76 Elapsed: 00:00:00.49
# Mc/sec: 780.15
//
Query:       KKY20753.1  [L=476]
Description: putative glutathione reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-51  174.4   0.9    4.9e-51  173.7   0.9    1.3  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    3.6e-31  107.7   0.5    8.5e-31  106.5   0.5    1.7  1  Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase,
    5.7e-12   46.0   2.5    2.9e-11   43.7   0.0    2.8  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    4.6e-05   22.8   3.2    0.00026   20.4   0.0    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      0.002   17.3   3.2      0.034   13.2   3.6    2.5  3  GIDA           Glucose inhibited division protein A
     0.0058   16.0   0.1     0.0085   15.5   0.1    1.3  1  FAD_oxidored   FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.067   12.8   0.1       0.12   11.9   0.1    1.6  1  DAO            FAD dependent oxidoreductase
       0.24   10.4   3.7       0.87    8.6   2.8    2.1  2  FAD_binding_2  FAD binding domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.7   0.9   2.2e-54   4.9e-51       2     294 .]       9     338 ..       8     338 .. 0.92

  Alignments for each domain:
  == domain 1  score: 173.7 bits;  conditional E-value: 2.2e-54
                  SEEEE--SHHHHHHHHHHHH.HTS-EEEEE...TTHCHHHCSHHHHCHHHHHHHHHHHHH........................HHHHCHHHHCCCCH CS
                  xxxxxxxxxxxxxxxxxxxx.xxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq.agakvtlve...legtclnggcllskallgvaedaeias........................evvkklnqgielll 71 
                  d +viGgG +G  aa+++a  +g k+++++   ++gtc+n+gc+++k  +++a+  e ++                        + +k ln  +e+  
   KKY20753.1   9 DFIVIGGGSGGSGAARRAAGwYGKKTAIIDagrSGGTCVNVGCVPKKMTVNMASINEAIQagkhygykipeytfdygefvqkrhDRIKVLNGAYENNW 106
                  789*****************89*******9999************************999*****************999888877777888888888 PP

                  CCTCEEEEESCEEEEETEEEC......TCEEEEEESEEEE---EEE-BC.TCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  72 geevvkidpgkkkvklekkke......gdeekiaydklvlAtGssprdl.gipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaala 162
                  ++e++++++gk+++  +++ e        + ++ + ++ +A G++p ++ +i+G  e++      ++s+e ++ k+lp+++   G+Gyi+vE+A+a++
   KKY20753.1 107 AKEGIELYHGKATFLSKNEIEvdmkdgTGKVTFSAPQICIAVGGHPTKPgDIKGS-EHG------ITSDEFFEIKKLPQKMGFLGSGYISVEIAGAMN 197
                  89**************9998899*98755678888********************.665......899****************************** PP

                  HHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESC.EEEEEEETTE..........EEEEEETTSCEEEESEEEE-S-EEES-HHCS.HCC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
  Pyr_redox_2 163 klgkevtlveardrllraldkelsaaleealekeGvevklgt.svkeidgnge..........klevvledgeeidadlvvvavGvrpstelle.ekl 248
                   lg+e++l  +++++l ++d++++++++++ e+ Gv ++ ++  +ke++  +            l+++ +dg+e+++  +++++G+ p+ e l+  k+
   KKY20753.1 198 ALGVETHLFIRGNTILTKFDPMVQETMTKYYEDAGVIIHKKHpGFKEVQLLKAaassedpsekLLKLISNDGSELEVNEMLWGIGRGPEVESLNlSKI 295
                  **************************************9664345555444445555678886677******************************** PP

                  T-EEEETTEEE--TTSBESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 249 glelderggivvdeflrtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                  g++ ++ g ivvd+f++t+v+giya+GDv+   g+ el+++A ++G
   KKY20753.1 296 GVKQKSSGHIVVDKFQNTSVDGIYALGDVT---GQAELTPVALAAG 338
                  ******************************...9999999998876 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5   0.5   3.8e-34   8.5e-31       1     109 [.     361     475 ..     361     476 .] 0.98

  Alignments for each domain:
  == domain 1  score: 106.5 bits;  conditional E-value: 3.8e-34
                    BEEEEESSSEEEEEES-HHHHHHHHSG..EEEEEEEEECGHHHCHTTH....TEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHH CS
  Pyr_redox_dim   1 iptvvftdpevasvGlteeeAkaagie..ikvgkfpfkangralayae....tkgfvKlvadaktgkvlGahivGpgageliqelavaikagltve 90 
                    iptvvf +pev+++Glte +A +++++  ik+++++f a+++ ++ ae      + +Kl+++ k+++++G+hi+G+g ge++q++ va+k+g++++
     KKY20753.1 361 IPTVVFAHPEVGTTGLTEPQAIEKYGKenIKIYHTRFPAMYYDVFPAEekkkHPTEMKLICEGKDEEIVGMHILGQGIGEMMQGFGVAVKMGAKKR 456
                    7*************************9******************999999899****************************************** PP

                    HHHTSBSSSSSTGGGGHCH CS
  Pyr_redox_dim  91 dladtihihPtlsealkea 109
                    d++++++ihPt +e+l+++
     KKY20753.1 457 DFDSCVAIHPTSAEELVTM 475
                    ****************987 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.3       0.3   6.8e+02       3      30 ..      11      39 ..       9      42 .. 0.86
   2 ?   -2.8   0.0       4.5     1e+04      49      61 ..     105     117 ..      96     131 .. 0.78
   3 !   43.7   0.0   1.3e-14   2.9e-11       2      60 ..     180     238 ..     179     242 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.3
                EEECSSHHHHHHHHHHHH.TTSEEEEEES CS
   Pyr_redox  3 vvvGgGyiglElAgalae.lgkkVtvver 30
                +v+GgG  g  +A  +a  +gkk+ ++++
  KKY20753.1 11 IVIGGGSGGSGAARRAAGwYGKKTAIIDA 39
                8********99999999989999988875 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.5
                 HHHHTTEEEECSE CS
   Pyr_redox  49 klekngievllnt 61 
                 +  k+gie+++++
  KKY20753.1 105 NWAKEGIELYHGK 117
                 5568899998876 PP

  == domain 3  score: 43.7 bits;  conditional E-value: 1.3e-14
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECS CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievlln 60 
                 + ++G+Gyi +E Aga+++lg +++++ r++++l ++D+++++ ++++ e+ g+ ++ +
  KKY20753.1 180 MGFLGSGYISVEIAGAMNALGVETHLFIRGNTILTKFDPMVQETMTKYYEDAGVIIHKK 238
                 5689***************************************************9986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   1.5     0.042        95       1      35 [.      11      45 ..      11      66 .. 0.88
   2 !   20.4   0.0   1.1e-07   0.00026     118     305 .]     134     322 ..     121     322 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.042
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgnigns 35
                 i+iG+G  G +aa  +     ++  i++ g+ g +
   KKY20753.1 11 IVIGGGSGGSGAARRAAGWYGKKTAIIDAGRSGGT 45
                 89************99999999999***9987755 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 1.1e-07
  Pyr_redox_3 118 tsketyeAkkviiAtGefdkPnkl.nipGeeklvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseieke.esdpsyslkpd 213
                  t k t++A+++ iA G   +P k+ +i+G+e + + + ++ e++k+  qk+   G +  +v++A  + + g e ++++rg++i ++ +  ++ ++  +
   KKY20753.1 134 TGKVTFSAPQICIAVGG--HPTKPgDIKGSE-HGITSDEFFEIKKL-PQKMGFLGSGYISVEIAGAMNALGVETHLFIRGNTILTKfDPMVQETMTKY 227
                  567799**********8..8888746****9.9**********655.7899999**************************998765145555555555 PP

  Pyr_redox_3 214 ienrleelvke....ekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkk..slfeldedgrpvlteeteetnvpglflaG 305
                  +e+    + k+    +++++l+ a   e    e+  k+ ++dg+++ev ++++  +G  p+++ l+    +++++++g++v+++  + t v+g++  G
   KKY20753.1 228 YEDAGVIIHKKhpgfKEVQLLKAAASSEDPS-EKLLKLISNDGSELEV-NEMLWGIGRGPEVESLNLskIGVKQKSSGHIVVDK-FQNTSVDGIYALG 322
                  5554433333378887799988887777665.5778999******999.677888*******9987633666666667777765.67899*****987 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   3.6   1.5e-05     0.034       1      58 [.       9      69 ..       9     192 .. 0.85
   2 ?   -2.9   0.0       1.2   2.7e+03     349     367 ..     309     327 ..     305     331 .. 0.85
   3 ?    0.6   0.0      0.11   2.4e+02     333     373 ..     338     379 ..     327     382 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.5e-05
                CEEEE-SSHHHHHHHHHHHH.TT--EEEE..ES-GGGTT--SSSSEEE-TTHHHHHHHHHH CS
        GIDA  1 dviViGgGhAGceAAlaaar.lGakvlLi..thkldtiaelsCnpsiggiakgllvrEida 58
                d iViGgG  G+ AA  aa   G k+++i    + +t+++++C p    +  + + + i+a
  KKY20753.1  9 DFIVIGGGSGGSGAARRAAGwYGKKTAIIdaGRSGGTCVNVGCVPKKMTVNMASINEAIQA 69
                579************9998637*******99999***********9988888887777776 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.2
                 TSBBSSSBTEEE-CGGGTB CS
        GIDA 349 tLetkkvkgLflAGqinGt 367
                 +++  +v+g+++ G+++G 
  KKY20753.1 309 KFQNTSVDGIYALGDVTGQ 327
                 6777889**********95 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.11
                 -EEEEEEEE-GGGB-T.TSBBSSSBTEEE-CGGGTB-SHHHH CS
        GIDA 333 Gyaieydyvdprqlln.tLetkkvkgLflAGqinGteGYeEa 373
                 G    ++ + p++l++ +L   +++++ +A    Gt+G +E 
  KKY20753.1 338 GRKLGNRLFGPPELKEdHLDYDRIPTVVFAHPEVGTTGLTEP 379
                 5566789999*****99*********************9886 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   3.8e-06    0.0085       1      64 [.       9      67 ..       9     145 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.8e-06
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAar.aGakvlLveergvlGGlltsglvatdignkaeeqvvtgiarefl 64
                  D +V+GGg++G  AA  Aa   G+k+++++  +  GG+  + +  +  ++     v+   + e +
    KKY20753.1  9 DFIVIGGGSGGSGAARRAAGwYGKKTAIIDAGR-SGGTCVNVGCVPKKMT-----VNMASINEAI 67
                  889************9877538*******9866.5888777665554443.....3333334444 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   5.5e-05      0.12       1      35 [.       9      44 ..       9     140 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.5e-05
                EEEEECTSHHHHHHHHHHHHT.T..EEEEESSSSTTSS CS
         DAO  1 dvviiGGGiiGlstAyeLarr.g..Vtllekgdiagsg 35
                d ++iGGG  G+++A+ +a   g  ++++++g+  g g
  KKY20753.1  9 DFIVIGGGSGGSGAARRAAGWyGkkTAIIDAGRS-G-G 44
                789***************8766789*******54.4.3 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.8   0.00039      0.87       1      35 [.       9      43 ..       9      49 .. 0.89
   2 ?   -0.4   0.0      0.21   4.7e+02     384     403 ..     307     326 ..     292     334 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00039
                   SEEEE--SHHHHHHHHHHHH.TTT-EEEEESSSGGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaae.aGlkvavvekeqefg 35
                   D iViG+G +G  AA +aa   G+k+a+++ + + g
     KKY20753.1  9 DFIVIGGGSGGSGAARRAAGwYGKKTAIIDAGRS-G 43
                   88****************9889********9987.4 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.21
                    ESTTEEESSBTEEE-STCEE CS
  FAD_binding_2 384 vldadgqpipGLYAaGevaa 403
                    v++ +++ ++G YA G v++
     KKY20753.1 307 VDKFQNTSVDGIYALGDVTG 326
                    36678889*********993 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3091.63
//
Query:       KKY20754.1  [L=327]
Description: hypothetical protein UCRPC4_g04121 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-08   33.3   2.6    1.3e-07   31.8   2.6    1.8  1  Lactamase_B    Metallo-beta-lactamase superfamily
    1.3e-05   24.9   0.2    1.9e-05   24.3   0.2    1.3  1  Lactamase_B_2  Beta-lactamase superfamily domain
  ------ inclusion threshold ------
      0.028   14.3   0.0      0.042   13.7   0.0    1.4  1  Lactamase_B_3  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   2.6   2.2e-11   1.3e-07       4     138 ..      49     231 ..      46     238 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 2.2e-11
                  CSSEEEEEE........ETTCEEEES--SCHHHHHHHH....................HHHHHTSGG.GGEEEEE-SBSSHHHHTTGGGCTTHHCC.E CS
  Lactamase_B   4 dpvnsylie........gdggviLiDtGtsteaaraal....................elaalglkp.kdvdavilTHlHlDHiGglgglveatdv.p 71 
                  +p+ s+li+         dg+++L+D G++ + +r+                      +l+a gl+p  d+d vil+H H+DH+G  +++ +a  v  
   KKY20754.1  49 VPTLSFLIRhpsegpngRDGKNLLFDLGMPRDLGRFPPslqshiadrqpisqhpdvadNLRAGGLDPaSDIDVVILSHVHWDHVGTPEDFHNAKFVvG 146
                  5777888888888888899***************************************99999998746*********************99866515 PP

                  ETCCEHHHHCCHCHHHHHHHHHCCHH..................TTCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEE CS
  Lactamase_B  72 vgavaeeapalfmeeaddaasrkgll..................lagvsadkpdvdeeeldgnaggrralyvtggpghghghgvv 138
                  +g  +  +   ++e +   ++++ l+                  +++ ++d       +  ++ +g+++lyv+  pgh +gh+ +
   KKY20754.1 147 SGTFHVLENGVPPESPSEIFVHDILPpektfefppvaiddptaaPKQTDHDWRSLASFPAVIDFFGDGSLYVVDSPGHFPGHIAL 231
                  7777777777777777777777777799999999999999999989999999999999999999999999999999999998876 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.2   3.1e-09   1.9e-05      26     151 ..     114     230 ..      98     289 .. 0.64

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 3.1e-09
                    --..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE-TTSEEEECSTTE.EEEEEEE-EE--CTCCE CS
  Lactamase_B_2  26 delppidaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylaleeepavnvheldwgesfelgdggl.eitatparhksgrrldr 120
                    d  ++id+V+l+h H+DH+    ++       +++++  g+  vle++ +   ++ e +  +  l ++++fe+ ++ + + ta p + ++ +    
     KKY20754.1 114 DPASDIDVVILSHVHWDHVGTPEDFHN-----AKFVVGSGTFHVLENGVP-PESPSE-IFVHDILPPEKTFEFPPVAIdDPTAAPKQTDHDW---- 198
                    44569**************65555555.....569999********9965.556666.6778888999999995443312355555555555.... PP

                    -TTTSEEEEEE.CTTEEEEEESS-S---HHHH CS
  Lactamase_B_2 121 nagdtlGlrie.gggkrvyyigDtgyipeeig 151
                    +    +  +i+  g+ ++y +   g++p++i+
     KKY20754.1 199 RSLASFPAVIDfFGDGSLYVVDSPGHFPGHIA 230
                    44445555666444445555555566666654 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     7e-06     0.042      31      73 ..     113     152 ..      68     197 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7e-06
  Lactamase_B_3  31 eppaeeaDlvlisqaledHahletlkqlaenvkvleegeslev 73 
                      pa ++D+v++s+ ++dH  ++++     n+k++ + +++ v
     KKY20754.1 113 LDPASDIDVVILSHVHWDHVGTPEDFH---NAKFVVGSGTFHV 152
                    45789**************99998877...8888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.34s 00:00:00.84 Elapsed: 00:00:00.51
# Mc/sec: 1923.98
//
Query:       KKY20755.1  [L=440]
Description: putative tyrosyl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-64  215.6   0.0    1.1e-63  215.3   0.0    1.1  1  tRNA-synt_1b     tRNA synthetases class I (W and Y)
  ------ inclusion threshold ------
      0.013   15.5   0.0          9    6.5   0.0    2.8  2  Leucyl-specific  Leucine-tRNA synthetase-specific domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.3   0.0   1.3e-67   1.1e-63       2     292 ..      33     330 ..      32     331 .. 0.96

  Alignments for each domain:
  == domain 1  score: 215.3 bits;  conditional E-value: 1.3e-67
                   HHS--EEEEEEETSSS-BGGGHHHHHHHHHHHHTTSEEEEEEEHHHHHTTTTT-SSHHHHHHHHHHHHHHHHHHH.HHTCHTTTEEEEETHHHHTTH CS
  tRNA-synt_1b   2 kerplrvysGidPTgklHlGylvplkklvelqkaghevffliaDlhAiigdpskaeerklrkreevlenaikaql.akgldpekaevvlqsewlehl 97 
                   ++rpl +y G+++Tg++H+Gylvp++kl ++++ag++v +l+aD h+++++ + a+ + ++ r+++++ +i   l a+g+d++k+e+vl+s+++ ++
    KKY20755.1  33 QNRPLVIYFGTATTGRPHCGYLVPFMKLSHFLRAGCRVKVLLADIHGFLDNLK-APIELVNYRATYYKFVITSVLkAIGVDISKLEFVLGSSYQLSS 128
                   689**************************************************.****************666664888****************** PP

                   HHHHHHHHHHTTCBHHHHHHHHHCCHHCSSSC--BHHHHHHHHHHHHHHHHTCHSEEEEEGGGHHHHHHHHHHHHHHHHHSTTSS-EEEEET-BBST CS
  tRNA-synt_1b  98 elaellrdlgklgslnrmlqfksvkkrleegegislgeftYplLqaaDilllkadlvpgGsDQkqnielgrdlarrfnkkevfkkpegltvplltgl 194
                   +++++l++l+++++ ++  ++ +  + +++ ++ +l+ ++Ypl+qa+D+ +l +d ++gG DQ++++ l+ + + r+++k    ++ +l++p+++gl
    KKY20755.1 129 KYTMDLFRLSSMVTEHDAKKAGA--EVVKQVDNAPLSGLIYPLMQALDEEHLGVDAQFGGVDQRKIFALAQESLGRIGYK----QRAHLMNPMVPGL 219
                   **********************9..6666655679********************************************9....************* PP

                   TSSSBTTCETTCGC-BTTCCHHHHHHHHHHCHCSTTC..SHHHHHHHHHTHHH............CHHHHHHHHCCSEEESSHHHHHHHHHCCCCHH CS
  tRNA-synt_1b 195 dGekKmSKSagnsaIfLddekesvkkkiqkavtdsde..evekllklktelsn............elierleavsgkkpkreaeellaeevtklvhg 277
                   +G+ KmS+S++ s+I+ +d+ e vkkk +ka+ +  e  +++  +++ ++l +            ++ier  ++++   ++ +e+++ ++ ++++++
    KKY20755.1 220 AGG-KMSSSEPDSKIDFLDSAEVVKKKLKKAYAKAMEveGNGIISFIEYVLLPlsslqsetmqarFVIERRPEEGEALVYTNIEDVKRDYLEDKLTP 315
                   ***.********************************9999999********99********************999999****************** PP

                   HHHHHHHHHHHHHHH CS
  tRNA-synt_1b 278 gdlkkalaealnell 292
                   + lk+ +++aln++l
    KKY20755.1 316 QLLKSSVTDALNAIL 330
                   ************998 PP

>> Leucyl-specific  Leucine-tRNA synthetase-specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.001         9      10      44 ..     120     154 ..     112     160 .. 0.80
   2 ?    5.8   0.0    0.0016        14      35      52 ..     396     413 ..     389     414 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.001
  Leucyl-specific  10 eGeivrLseeaRirLeleeseLsleevkKmGAELR 44 
                       G+ + Ls++  + L   +s  +  ++kK GAE  
       KKY20755.1 120 LGSSYQLSSKYTMDLFRLSSMVTEHDAKKAGAEVV 154
                      5788888888888777677889***********75 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0016
  Leucyl-specific  35 evkKmGAELRehedGklh 52 
                      e  K G E+ ++edG++h
       KKY20755.1 396 ESTKAGNEIVAEEDGSVH 413
                      778*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.35s 00:00:00.96 Elapsed: 00:00:00.53
# Mc/sec: 2484.89
//
Query:       KKY20756.1  [L=1315]
Description: putative dna damage repair protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.7e-39  133.5   0.0    1.2e-38  132.5   0.0    1.6  1  IMS          impB/mucB/samB family
    5.6e-20   70.1  13.5    3.6e-10   38.9   2.2    4.0  3  UBM          Ubiquitin binding region
    2.7e-15   56.5   2.6    5.8e-14   52.3   0.2    2.5  2  REV1_C       DNA repair protein REV1 C-terminal domain
    1.5e-12   48.2   0.0    3.9e-12   46.9   0.0    1.7  1  IMS_C        impB/mucB/samB family C-terminal domain
    3.6e-09   36.9   0.0    9.7e-09   35.5   0.0    1.7  1  BRCT_2       BRCT domain, a BRCA1 C-terminus domain
    9.5e-06   25.9   0.0    2.9e-05   24.3   0.0    1.9  1  BRCT         BRCA1 C Terminus (BRCT) domain
      0.001   19.0   0.0     0.0032   17.4   0.0    1.9  2  PTCB-BRCT    twin BRCT domain
     0.0011   19.3   0.0     0.0025   18.1   0.0    1.6  1  mCpol        minimal CRISPR polymerase domain
     0.0011   19.3   0.0      0.004   17.4   0.0    2.0  2  LIG3_BRCT    DNA ligase 3 BRCT domain
  ------ inclusion threshold ------
      0.087   13.2   0.2       0.72   10.3   0.0    2.6  2  IMS_HHH      IMS family HHH motif
       0.13   11.6   0.0       0.25   10.7   0.0    1.4  1  F420_ligase  F420-0:Gamma-glutamyl ligase
       0.18   12.1   0.0       0.65   10.3   0.0    1.9  2  Cdd1         Pathogenicity locus
        0.2   12.0   0.0       0.69   10.3   0.0    1.9  1  DUF1805      Domain of unknown function (DUF1805)


Domain annotation for each model (and alignments):
>> IMS  impB/mucB/samB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.5   0.0   8.5e-42   1.2e-38       1     148 [.     378     540 ..     378     542 .. 0.95

  Alignments for each domain:
  == domain 1  score: 132.5 bits;  conditional E-value: 8.5e-42
                 EEETTHHHHHHHHHT.T-TTS-EEEEET....TEEEEE-HHHHTTT--TTSBHHHHHTTHTT-EEEEEE-HHHHHHHHHHHHHHHHH-S..EEEEETTE CS
         IMS   1 iDmdaFyasverardpeLkgkPvvvaqgsekrgiviavsyeArayGvkrgmrikeakklcpdlivvkvdlekyrraskkileilkrfispkvekasiDE 99 
                 +D+d+F+a+v+++++pe  gkPvvva+gs +++ +++++y+Ar +Gvk+gm++k a++lcpdl v+++++e+y++ s+ ++e++++     v+++siDE
  KKY20756.1 378 VDFDSFFAAVSLRKHPEHVGKPVVVAHGSGSGSEIASCNYPARTFGVKNGMWMKTALQLCPDLKVLPYEYEAYEDTSRLFYECIMDT-EGIVQSVSIDE 475
                 7***********************************************************************************999.668******** PP

                 EEEE-HHHHHHHH-S................HHHHHHHHHHHHHHHH---EEEEEESSHHHHHHH CS
         IMS 100 ayldltgleelaese................gaalakelrkaikeelgltvsiGiasnkllAKla 148
                 a +d+t+ +   + +                + ++a++lr+++ke +g++vs+Gi+ n llA++a
  KKY20756.1 476 ALVDITAQVLPTGGSdgkgvsegsifreqtqADDIARKLRNRVKEATGCDVSVGIGGNILLARVA 540
                 *******555555446899********************************************98 PP

>> UBM  Ubiquitin binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.3   8.1e-06     0.011       4      22 ..     821     839 ..     819     840 .. 0.88
   2 !   21.9   0.3   5.9e-08   8.2e-05       4      32 ..     881     909 ..     878     910 .. 0.87
   3 !   38.9   2.2   2.6e-13   3.6e-10       6      34 ..    1006    1034 ..    1001    1034 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.1e-06
         UBM   4 pppegiDpsFLaaLPpdLR 22 
                 p p++iDps La LP d+R
  KKY20756.1 821 PSPSQIDPSVLAELPADIR 839
                 56778************** PP

  == domain 2  score: 21.9 bits;  conditional E-value: 5.9e-08
         UBM   4 pppegiDpsFLaaLPpdLReEVLaqqdee 32 
                 p +++iDp+ LaaLP+d ++EV a +++e
  KKY20756.1 881 PSQSQIDPETLAALPEDVQAEVRAYYAQE 909
                 66788*****************8877776 PP

  == domain 3  score: 38.9 bits;  conditional E-value: 2.6e-13
         UBM    6 pegiDpsFLaaLPpdLReEVLaqqdeeql 34  
                   ++i psFL+aLPpd+R E Laqq++e++
  KKY20756.1 1006 LSDISPSFLDALPPDIRSELLAQQRQERM 1034
                  456************************96 PP

>> REV1_C  DNA repair protein REV1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2     0.057        79       1      23 [.    1094    1116 ..    1094    1118 .. 0.84
   2 !   52.3   0.2   4.2e-17   5.8e-14      14      89 ..    1211    1308 ..    1208    1311 .. 0.95

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.057
      REV1_C    1 dvrdlleaWveafkeegPneeDv 23  
                  d+r++++ Wve fk+ + ++ D 
  KKY20756.1 1094 DLREAIKGWVEMFKDVESDDSDA 1116
                  79***********8887777775 PP

  == domain 2  score: 52.3 bits;  conditional E-value: 4.2e-17
      REV1_C   14 keegPneeDvealakyLkkvveeerdlekavavlkwlrvlleee......................eeskeeeageaWekafrevkeavqeavrkrg 88  
                  +e++P++eDv+al+ yL +v++ee+d++ka++++kwl++++++                       +e k+ +  + W ++++++k++vq+a+++ g
  KKY20756.1 1211 DEQPPYKEDVQALSIYLTRVIKEEQDVSKATDLVKWLDWCVNDMvidtfnhnspanqenrqpdpqrSEIKRPKLISRWIHVVQQLKTNVQRAANETG 1307
                  5799************************************************************9988999999*******************9987 PP

      REV1_C   89 g 89  
                   
  KKY20756.1 1308 V 1308
                  5 PP

>> IMS_C  impB/mucB/samB family C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   2.8e-15   3.9e-12       5     109 ..     626     746 ..     622     751 .. 0.89

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 2.8e-15
       IMS_C   5 rpepksissektfpepyd.esklkkelreLaeelarrLrdkglvartitlklrys................dfhasrsatLprptsdtreileaalkLl 86 
                 +  +ks+s+e +++ ++  ++++ + ++ L+eel+rrL ++ + ++++t k++++                ++++++s  L+++t++ + i ++a+++l
  KKY20756.1 626 QVIRKSVSAEVNWGIRFVnQAQADEFVYSLCEELSRRLLENSVKGKQLTMKIMKRsadapldppkhlghgkCDTFNKSILLGVATNAKEVIGREAVSML 724
                 5679***********5543666999***************************88889999999777777766669************************ PP

       IMS_C  87 rrlidepglpirligvsasnlve 109
                 ++ +  ++ ++r +gv++++l++
  KKY20756.1 725 KSYNF-SPGELRGLGVQMTKLEP 746
                 99999.***************94 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0     7e-12   9.7e-09      16      85 .]      79     151 ..      68     151 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 7e-12
      BRCT_2  16 epspsreklkklIeknGGevvetitsa..vyiviaesneee.laekrkrrvvspkyIkdCikkgkllplenyl 85 
                 + +ps ++l++lI  +GG + +  + +   +++ia++ + +  +e +++r+vsp+++ d++++gkl+p ++y+
  KKY20756.1  79 YTQPSLNDLHALIVGHGGGFLQYLDGKttATHIIASNLTPKkREEFKRYRIVSPQWVVDSVRAGKLQPWDQYR 151
                 567899************99887755543455555555444799***************************96 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.1e-08   2.9e-05       4      78 ..      67     138 ..      64     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.1e-08
                 TTTTTEEEEEEESTSSHHHHHHHHHHHHTTCEEESSCSTTS..SEEEESSSHSHHHHHHHHHHTTSEEEETHHHHHH CS
        BRCT   4 llfhgckfvitgvldnftrdeleelikehGGkvttevskkt..thlvvgepesrslkylealklnipivheewlldc 78 
                 ++f++++ ++ +++++   ++l  li  hGG + ++++ kt  th+++++     + ++    + ++iv+++w++d+
  KKY20756.1  67 PIFRDVVACV-NGYTQPSLNDLHALIVGHGGGFLQYLDGKTtaTHIIASNL----TPKKREEFKRYRIVSPQWVVDS 138
                 79********.**********************888866662269999888....3466677789**********98 PP

>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.3e-06    0.0032       1      63 []      72     134 ..      72     134 .. 0.86
   2 ?   -3.2   0.0       6.3   8.6e+03      14      30 ..     574     590 ..     568     592 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.3e-06
                 -EEEEECB-TTCHHHHHHHHHHTT-EEESSE..ETT-SEEEECSS-CHHHHHHHHCT-EEE-CHH CS
   PTCB-BRCT   1 lvicvtgysgddrkslqklieamGaeyskdl..tksvTHLicksgeGekyekAkkwgipvVsveW 63 
                 +v+cv gy++ ++++l  li+ +G+ + + l  +++ TH i+ + + +k e  k+ +  +Vs++W
  KKY20756.1  72 VVACVNGYTQPSLNDLHALIVGHGGGFLQYLdgKTTATHIIASNLTPKKREEFKRYR--IVSPQW 134
                 689****************************8888899****999888877655543..466666 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6.3
                 HHHHHHHHHTT-EEESS CS
   PTCB-BRCT  14 kslqklieamGaeyskd 30 
                 +s+   +e++G +y+kd
  KKY20756.1 574 YSIGSKLEELGVKYVKD 590
                 567788999*****998 PP

>> mCpol  minimal CRISPR polymerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.8e-06    0.0025      67     111 ..     507     552 ..     496     554 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.8e-06
       mCpol  67 e.dllvelsrvyqkitgltvSiGvGktlrealiaLkkAkskgknrv 111
                 + d + +l++  ++ tg  vS+G+G ++  a +aL+kAk  g++++
  KKY20756.1 507 AdDIARKLRNRVKEATGCDVSVGIGGNILLARVALRKAKPAGQHQI 552
                 347889999******************************9998876 PP

>> LIG3_BRCT  DNA ligase 3 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.9e-06     0.004       6      79 ..      69     142 ..      67     144 .. 0.74
   2 ?   -3.3   0.0       8.4   1.2e+04      45      67 ..    1290    1311 ..    1285    1312 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.9e-06
   LIG3_BRCT   6 Ftgvklfipksv.edykklrRYfiAydGdlvkeek.ekeaTHvvvskkeeskkekeksknakaVtaewiwesIkkr 79 
                 F +v+  ++    +  + l+  ++  +G  ++  + +++aTH+++s+     k+ e+ k+ + V+++w+ +s++++
  KKY20756.1  69 FRDVVACVNGYTqPSLNDLHALIVGHGGGFLQYLDgKTTATHIIASNL--TPKKREEFKRYRIVSPQWVVDSVRAG 142
                 555555555444345555566688888888887661456*******88..788899999**************986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 8.4
   LIG3_BRCT   45 HvvvskkeeskkekeksknakaV 67  
                  Hvv++ k   +++++++++++ V
  KKY20756.1 1290 HVVQQLK-TNVQRAANETGVRGV 1311
                  9999955.566666666666655 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00052      0.72       1      32 []     554     585 ..     554     585 .. 0.96
   2 ?   -0.8   0.0       1.7   2.4e+03      16      26 ..     600     610 ..     600     611 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00052
     IMS_HHH   1 pddvkefLwplpitkipGiGgklgekLeklGi 32 
                 p+++ +fL+ l + ++pG+  + g kLe lG+
  KKY20756.1 554 PEEILNFLGGLTVQDLPGVAYSIGSKLEELGV 585
                 7899**************************97 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.7
     IMS_HHH  16 ipGiGgklgek 26 
                 i ++G+k+gek
  KKY20756.1 600 ITTLGPKTGEK 610
                 5689*****98 PP

>> F420_ligase  F420-0:Gamma-glutamyl ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00018      0.25     120     171 ..     480     531 ..     353     547 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00018
                  TTS-EEEGGG-B-TTS-TTEEE---S-HHHHHHHHHHHHHHHHS---EEEE. CS
  F420_ligase 120 klGllgsnagidesnveegllkllPedpdksaeeikkklkertgkdveVliy 171
                     +++   g d ++v+eg +    +++d++a+++++++ke+tg+dv+V i 
   KKY20756.1 480 ITAQVLPTGGSDGKGVSEGSIFREQTQADDIARKLRNRVKEATGCDVSVGIG 531
                  4567788999***************************************884 PP

>> Cdd1  Pathogenicity locus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00047      0.65       8      52 ..     566     610 ..     563     613 .. 0.92
   2 ?   -2.9   0.0       6.3   8.6e+03      51      67 ..    1245    1261 ..    1237    1270 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00047
        Cdd1   8 lqdiPniGkalaedlvelGirsveelkgedpeelyeklekltgar 52 
                  qd+P++  ++ ++l elG++ v++++g + e+l   l  +tg++
  KKY20756.1 566 VQDLPGVAYSIGSKLEELGVKYVKDIRGLTRERLITTLGPKTGEK 610
                 69*****************************99999998888876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.3
        Cdd1   51 arhDpCvldvfrsvvkf 67  
                  ++ D Cv d+ +   ++
  KKY20756.1 1245 KWLDWCVNDMVIDTFNH 1261
                  68899999987766555 PP

>> DUF1805  Domain of unknown function (DUF1805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0005      0.69      36      61 ..     410     435 ..     408     436 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0005
                 SB-SEE-HHHHHTT--TT-BHHHHGG CS
     DUF1805  36 apvesvteaAeelGikeGmtgkeaLe 61 
                 ++++s +  A+  G+k+Gm +k aL+
  KKY20756.1 410 SEIASCNYPARTFGVKNGMWMKTALQ 435
                 689*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.62
# Mc/sec: 6343.49
//
Query:       KKY20757.1  [L=405]
Description: putative taurine catabolism dioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-32  111.7   0.0    6.9e-32  111.3   0.0    1.1  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family
  ------ inclusion threshold ------
      0.081   13.2   0.1       0.14   12.5   0.1    1.3  1  TSSC4     Tumour suppressing sub-chromosomal transferable can


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.3   0.0   7.7e-36   6.9e-32       4     268 .]     101     366 ..      98     366 .. 0.83

  Alignments for each domain:
  == domain 1  score: 111.3 bits;  conditional E-value: 7.7e-36
        TauD   4 pltpkfgaegvdlsdleslddelkeelrellaeygvvvfrgfplspeqqlefarrf.G.plygtpgrgtntkygevld.....vssvyesadianlayt 95 
                 plt+ ++++++ l++l +++   +    ell++ g+++++gfp +   +++ a +  G ++y + +  +n +++ +++      +s++ ++ +++ +++
  KKY20757.1 101 PLTG-ISQDNFILPTLGPFL---RTLRTELLDGKGFILIKGFPADKWSLKKSATAYmGlGTYLGYFVSQNGRGHVLGHvkdlgEDSTQIDKVRIYRTNA 195
                 7888.99999*****99999...999******************5555554444332458999999999999999999555544444444444446666 PP

        TauD  96 tllwHtDlsylesppgiqlLhcleapatGGetpfvDgraaynaLpeelpellegltavrvyyhyrggglrteqelpavdkhprtghpvvrthpvltgrk 194
                  +++H D s      +i+ L c+  + +GGe+ +v++ +++n L++e+p+  e+lt+  +y++++g        + +v ++p+ ++pv++ +p   g+ 
  KKY20757.1 196 RQFFHADDS------DIVGLLCVARALEGGESDIVSSHHVWNTLQKERPDVAETLTQPIWYFDRKG--------EVSVGEEPYIRQPVFYLEP--GGKG 278
                 6669*****......***************************************************........*******************..9999 PP

        TauD 195 allvn..ppfatri.....eglgt...peskelldaleelledpeftyrfqwqeGdlvifdNrrvlHgrtaf.....degeeR.hllrcy 268
                 +++++  p + +++      g  +   p++ e++  le+ ++  ++++ + ++ Gd++++ N  vlH+rta+     ++g++R hl+r++
  KKY20757.1 279 RVYSKwdPYYVRSLtrfsdAGIIPplsPKQVEAMTVLEDTCM--RLSLHMILEIGDIQFVSNEHVLHARTAYkdfapSTGKPRrHLMRLW 366
                 999997654444444445533333666889999999999998..****************************877775665544****98 PP

>> TSSC4  Tumour suppressing sub-chromosomal transferable candidate 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.5e-05      0.14      57      94 ..      55      93 ..       8      99 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.5e-05
       TSSC4 57 krnsrgkrvqrvPDykanPekWtk.YSLeDVediseqsN 94
                 ++++g+ v +  Dy+ nPe+Wt   S  +Ve++s +  
  KKY20757.1 55 PKEITGQTVWKAEDYRNNPERWTHvLSEAEVEELSKSAD 93
                4567788999999**********8346677888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.59s 00:00:01.22 Elapsed: 00:00:00.67
# Mc/sec: 1814.81
//
Query:       KKY20758.1  [L=253]
Description: hypothetical protein UCRPC4_g04125 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-05   22.9   0.1      9e-05   22.0   0.1    1.5  1  Glyco_hydro_16  Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1     5e-09     9e-05      55      91 ..       6      42 ..       2      89 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 5e-09
                    TTEEEEEEEETGGTSTTEEEEE.EEETT-TTEEEEEEE CS
  Glyco_hydro_16 55 aGvvtafylssedekahdEiDi.EflGndtgkvqtnvy 91
                     G+++af++   d+++ +EiDi E + ++t    ++++
      KKY20758.1  6 CGTWPAFWMFGPDWPDNGEIDIiEGVNTNTV-NAMTLH 42
                    59********99**********9*9844443.445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.35s 00:00:00.83 Elapsed: 00:00:00.53
# Mc/sec: 1428.85
//
Query:       KKY20759.1  [L=754]
Description: hypothetical protein UCRPC4_g04126 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-56  190.3  22.3    1.4e-36  126.4   4.1    3.8  3  Pectate_lyase_3  Pectate lyase superfamily protein
    1.9e-06   27.5   8.1     0.0036   17.0   0.9    2.7  2  End_N_terminal   N terminal extension of bacteriophage endosi


Domain annotation for each model (and alignments):
>> Pectate_lyase_3  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   2.9   5.2e-13   4.6e-09       1      29 [.     100     128 ..     100     133 .. 0.85
   2 !  126.4   4.1   1.6e-40   1.4e-36      89     215 .]     131     258 ..     125     258 .. 0.94
   3 !   38.0   1.7   1.7e-13   1.5e-09       3     123 ..     388     499 ..     386     519 .. 0.71

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 5.2e-13
                      SEEGGGGT---EEEEE-HHHHHHHH.... CS
  Pectate_lyase_3   1 frnVkdyGakgDGvtDdtaaiqkaiscas 29 
                      +rnVkdyGa gDGvtDdtaai++ai+++s
       KKY20759.1 100 WRNVKDYGAAGDGVTDDTAAINAAIQSDS 128
                      8************************4333 PP

  == domain 2  score: 126.4 bits;  conditional E-value: 1.6e-40
                      ..-EEEEEEEEEEEGGGG-SS---S..SEEEES-EEEEEEEEEEES-SSEEE-SSS---TT---SS--EEEEES-EEES-SS-SEEES-EEEEE CS
  Pectate_lyase_3  89 gsealiatnnfyrqirnlkiditav..apgatgihwqtaqatslenvefemseasgtkhqgifiengsggflndlvfsglgdigiavgnqqftv 180
                      g++++++t +f+rqirnl id t++  +++at++hw+taqatsl+nv++++s++sgt+h+g+fiengs gf++d++++g g  ++++gnqq+t+
       KKY20759.1 131 GNQGYGSTGVFWRQIRNLEIDLTSIpaSSAATALHWPTAQATSLQNVQINLSQESGTQHVGVFIENGSAGFISDVTVYG-GLVAFNIGNQQYTI 223
                      6799*********************64444599**********************************************.************** PP

                      ES-EEE-S--SEEE-TT-EEEEEEEEEESSSEEEE CS
  Pectate_lyase_3 181 rnitfnnattgievlwgwgwtlknvkinncegGid 215
                      rn+ ++na t+i++lw+wg+t+k+++i nc+ Gid
       KKY20759.1 224 RNVEISNAVTAIYQLWDWGFTYKSLTITNCTLGID 258
                      ********************************996 PP

  == domain 3  score: 38.0 bits;  conditional E-value: 1.7e-13
                      EGGGGT---EEEEE-HHHHHHHH......HTSS-EEE-SEEEEESS-EEE-SSEEEEES-TTTEEEEE-TT-SS--SEEES-TTT-...-EEEE CS
  Pectate_lyase_3   3 nVkdyGakgDGvtDdtaaiqkaiscasatttgavVYfPaGtYlvsspiilksgvqLvGdgngrpvlkaaaafvgaglidgdpyvsg.gsealia 95 
                      +V++ G +gDG tDdtaa q+a+  +   ++g++V+f aGtY v+++i ++ g   vG++  ++v+  ++ ++ a + +  p+v + g     +
       KKY20759.1 388 SVRTAGGTGDGTTDDTAAVQAAL--TNGANNGQIVFFDAGTYKVNNTIYIPPGSIVVGEA--YSVIMSSG-STFADIDNPVPVV-QvGR----S 471
                      89999******************..7888899**************************99..56665533.2222222222222.1122....2 PP

                      EEEEEEEGGGG-SS---SSEEEES-EEE CS
  Pectate_lyase_3  96 tnnfyrqirnlkiditavapgatgihwq 123
                        + ++q++++++++++ +pga  i+w+
       KKY20759.1 472 GDSGTVQWSDMIVSTQGSQPGAVLIEWN 499
                      2222356666666666666666666665 PP

>> End_N_terminal  N terminal extension of bacteriophage endosialidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   1.2   4.5e-06      0.04       1      21 [.     108     128 ..     108     140 .. 0.77
   2 !   17.0   0.9     4e-07    0.0036       2      36 ..     395     430 ..     394     435 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.5e-06
                     ---EEEEE-HHHHHHHHHHS- CS
  End_N_terminal   1 akGDGvtdDtdalsevlaaap 21 
                     a GDGvtdDt+a+++++++ +
      KKY20759.1 108 AAGDGVTDDTAAINAAIQSDS 128
                     78*************997633 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 4e-07
                     --EEEEE-HHHHHHHHHH.S-TTS-EE-TT-EEEES CS
  End_N_terminal   2 kGDGvtdDtdalsevlaa.apvgkkidGrGltykvs 36 
                      GDG tdDt+a++++l++ a +g+++     tykv 
      KKY20759.1 395 TGDGTTDDTAAVQAALTNgANNGQIVFFDAGTYKVN 430
                     69*************987255677777888899996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 4703.93
//
Query:       KKY20760.1  [L=533]
Description: hypothetical protein UCRPC4_g04127 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.36s 00:00:01.03 Elapsed: 00:00:00.56
# Mc/sec: 2848.71
//
Query:       KKY20761.1  [L=511]
Description: hypothetical protein UCRPC4_g04128 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0049   16.7   0.0      0.012   15.5   0.0    1.7  1  F-box       F-box domain
  ------ inclusion threshold ------
      0.023   14.6   0.0      0.055   13.4   0.0    1.6  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.3e-06     0.012       6      35 ..       4      33 ..       1      34 [. 0.92

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.3e-06
                S-HHHHHHHHHTS-HHHHHHHCTT-HHHHH CS
       F-box  6 LPsevlrhILerLplsdllalrrVSkgwri 35
                LP e+l+ ++++L + d+ ++r+V k++ +
  KKY20761.1  4 LPAEILHVVFSKLTTEDIQSMRLVNKRCSD 33
                9*************************9865 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.1e-06     0.055       2      30 ..       2      30 ..       1      37 [. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.1e-06
  F-box-like  2 srLPdEiLlqIFsyLppsdLlrlalVCrr 30
                + LP EiL  +Fs L ++d+ + +lV +r
  KKY20761.1  2 DTLPAEILHVVFSKLTTEDIQSMRLVNKR 30
                68************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 3145.58
//
Query:       KKY20762.1  [L=476]
Description: putative wlm domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-19   70.4   7.4    8.2e-19   68.4   7.4    2.1  1  WLM             WLM domain
    2.2e-05   24.6   1.1    2.2e-05   24.6   1.1    1.8  2  DUF45           Protein of unknown function DUF45
  ------ inclusion threshold ------
      0.078   12.6   3.3       0.19   11.4   3.3    1.6  1  Zn_ribbon_17    Zinc-ribbon, C4HC2 type
        0.3   11.1   5.9        1.3    9.1   3.1    2.5  2  DZR             Double zinc ribbon


Domain annotation for each model (and alignments):
>> WLM  WLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   7.4   1.8e-22   8.2e-19      33     169 ..       1     144 [.       1     208 [. 0.74

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 1.8e-22
         WLM  33 mkkhkfkVglLtElaPkeanlLGlNvnkGekieLrLRtdkddkeflpyesimgtllHELaHnvygpHdakFyallkeLekeveelkakGlk.egflkeG 130
                 mkkh+ +V++L E  P+ + ++G N n+Ge i+L L++     +++p++++  +++HELaHnv+ +H + F+   ++  ++++el ak ++ +gf ++G
  KKY20762.1   1 MKKHHLSVTTLEEHEPNRE-FIGRNFNNGEIIQLVLKNRGG--GWMPFRHVQMVMMHELAHNVQMNHKKLFWVERNKFAADLKELWAKNYTgDGFWGRG 96 
                 9***************987.*****************9996..******************************************************** PP

         WLM 131 krlggkevrnksa..............eeeeekealekagiagkgarlGgrse 169
                 ++   ++++ +                + +++ ++++      +g++ Gg++ 
  KKY20762.1  97 RTTDLQTIEANAVmptddlapaalcggTYRSRRRKRK-----RGGNTTGGQEL 144
                 ***9999997755777777765443333333333333.....33333333333 PP

>> DUF45  Protein of unknown function DUF45
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   1.1     5e-09   2.2e-05     162     200 ..      44      82 ..      41      85 .. 0.88
   2 ?   -3.8   0.1       2.5   1.1e+04      59      59 ..     218     218 ..     197     254 .. 0.51

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 5e-09
       DUF45 162 ppevidYVvvHElaHlleknHskrFwalvekllPdwkea 200
                 p + ++ V++HElaH +++nH+k Fw + +k+  d ke+
  KKY20762.1  44 PFRHVQMVMMHELAHNVQMNHKKLFWVERNKFAADLKEL 82 
                 6677899*******************9999999888875 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.5
       DUF45  59 e 59 
                  
  KKY20762.1 218 R 218
                 1 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.3   4.2e-05      0.19       4      30 ..     364     391 ..     362     403 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.2e-05
  Zn_ribbon_17   4 lksCayCelavkgr.vvlcgvCeHvlHa 30 
                    ksC +C l++    ++ c++C H lH 
    KKY20762.1 364 SKSCPMCTLNLPTTlTLTCPSCSHLLHP 391
                   689*******97651567*********5 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.1   0.00028       1.3      12      48 ..     364     403 ..     359     412 .. 0.68
   2 ?    2.0   0.0     0.049   2.2e+02      10      21 ..     449     460 ..     418     468 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00028
         DZR  12 arfCseCgtklkavaaedrCpsCgekvdp....earfCpeC 48 
                 ++ C+ C  +l+ ++   +CpsC++ ++p    ++ +C  C
  KKY20762.1 364 SKSCPMCTLNLP-TTLTLTCPSCSHLLHPysdpNHWVCSRC 403
                 577888888885.4457888888877654110044446666 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.049
         DZR  10 pdarfCseCgtk 21 
                  d ++C+ Cg++
  KKY20762.1 449 GDTQMCGICGER 460
                 455667777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1430  (0.079759); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.52
# Mc/sec: 2748.13
//
Query:       KKY20763.1  [L=390]
Description: putative mitochondrial carrier [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-45  151.1   0.6    3.5e-18   65.3   0.0    4.1  4  Mito_carr        Mitochondrial carrier protein
  ------ inclusion threshold ------
       0.08   12.1   0.5       0.46    9.6   0.0    2.3  3  Serine_protease  Gammaproteobacterial serine protease


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0     2e-10   1.8e-06       2      47 ..      54      99 ..      53     140 .. 0.84
   2 !   39.7   0.0   3.9e-14   3.5e-10      39      89 ..     155     205 ..     144     208 .. 0.89
   3 !   13.8   0.0   4.5e-06      0.04       7      42 ..     222     257 ..     218     268 .. 0.86
   4 !   65.3   0.0     4e-22   3.5e-18       4      92 ..     269     375 ..     266     378 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 2e-10
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS CS
   Mito_carr  2 elsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa 47
                e+sv +++ ++ l+ ++++l++tPldvv++rlq+q++ s++++s+ 
  KKY20763.1 54 EVSVSQRMTSAILGSVLTSLLATPLDVVRVRLQSQSTPSSSATSRF 99
                57889999******************************99887654 PP

  == domain 2  score: 39.7 bits;  conditional E-value: 3.9e-14
                 SSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr  39 sskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetl 89 
                 +++ ++++++ld l+ki k+eG + l+rGl+p+l + +pa++++f+ y+ l
  KKY20763.1 155 ETQRRTFTSTLDGLRKIAKNEGPTTLWRGLSPTLAMAVPANVIYFTGYDWL 205
                 455566666***************************************987 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 4.5e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTT CS
   Mito_carr   7 kellaGglagavatlvttPldvvKtrlqtqkksskk 42 
                 + l+aG++a ++a+lv+ P+++ +t + t ++++++
  KKY20763.1 222 SPLVAGSVARVAAALVVSPIEMFRTHIRTRAHHESS 257
                 5699***********************998777665 PP

  == domain 4  score: 65.3 bits;  conditional E-value: 4e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.............CCCSSTTTSCSS...............HHHHHHHHHHHHHHHGGGTTHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqt.............qkksskksksaa...............ildvlkkiykeeGlrglyrGllpnllr 74 
                 +++ ++++G ++ga+a+l+ttP+dv Ktr q+             +          +               + + l +i+k+eG +gl++G+ +++l+
  KKY20763.1 269 TFVDSFVSGTVSGATAALITTPFDVGKTRQQVyrhqgdekplsesA----------QravksqaravpeemtMPRFLFHILKTEGASGLFKGWAARCLK 357
                 7899****************************77766555554320..........1444555577889999999************************ PP

                 HHHHHHHHHHHHHHHHHH CS
   Mito_carr  75 vapasalkfvlyetlkrl 92 
                 vap+ +++ ++ye  k++
  KKY20763.1 358 VAPSCGIMISSYELGKKW 375
                 *************99886 PP

>> Serine_protease  Gammaproteobacterial serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3      0.11   9.8e+02      11      40 ..      65      94 ..      58     100 .. 0.71
   2 ?   -1.6   0.0      0.14   1.2e+03     171     198 ..     218     245 ..     211     253 .. 0.82
   3 ?    9.6   0.0   5.2e-05      0.46     171     198 ..     268     295 ..     258     340 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.11
  Serine_protease 11 avisfsvsaltsPfkalLtnlqkdgsvlps 40
                     ++ s+  s l  P+ ++ ++lq + + ++s
       KKY20763.1 65 ILGSVLTSLLATPLDVVRVRLQSQSTPSSS 94
                     344555578999**********98665554 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.14
  Serine_protease 171 delynkllaGalsGviAtvlttifnsyk 198
                      ++ y  l+aG ++ v A+++  ++  ++
       KKY20763.1 218 RDSYSPLVAGSVARVAAALVVSPIEMFR 245
                      5678889999999999999998888876 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 5.2e-05
  Serine_protease 171 delynkllaGalsGviAtvlttifnsyk 198
                      ++++  +++G +sG++A+++tt+f   k
       KKY20763.1 268 TTFVDSFVSGTVSGATAALITTPFDVGK 295
                      5778899****************98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2705.86
//
Query:       KKY20764.1  [L=534]
Description: putative f-box protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00011   22.1   1.0    0.00019   21.2   0.2    1.9  2  F-box-like  F-box-like
  ------ inclusion threshold ------
       0.12   12.3   0.2       0.23   11.4   0.2    1.5  1  F-box       F-box domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.2   2.1e-08   0.00019       1      47 [.     215     264 ..     215     265 .. 0.81
   2 ?   -2.5   0.0      0.55     5e+03      30      40 ..     312     322 ..     311     323 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.1e-08
  F-box-like   1 isrLPdEiLlqIFsy..L.ppsdLlrlalVCrrWrrvaldtplLWrrlvl 47 
                 i++LP +iL +I  +  L +p   +rlalVC+r+   ++++  +Wrr+ l
  KKY20764.1 215 IRSLPSDILHEIYLQiaLtDPACFTRLALVCKRFTYDVFTDMAVWRRVAL 264
                 679*********97644667888***********55555566*****965 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.55
  F-box-like  30 rWrrvaldtpl 40 
                 +Wr+v +++p+
  KKY20764.1 312 DWREVFHSHPR 322
                 7***9988875 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   2.6e-05      0.23       3      33 ..     215     248 ..     213     249 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.6e-05
                 HHHS-HHHHHHHHHTS-HHH...HHHHCTT-HHH CS
       F-box   3 lsrLPsevlrhILerLplsd...llalrrVSkgw 33 
                 + +LPs++l++I  +  l+d     +l++V+k++
  KKY20764.1 215 IRSLPSDILHEIYLQIALTDpacFTRLALVCKRF 248
                 678*****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       804  (0.0448435); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 3358.17
//
Query:       KKY20765.1  [L=940]
Description: hypothetical protein UCRPC4_g04132 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.9e-150  500.8   2.9   6.9e-150  500.8   2.9    2.0  2  KAR9             Yeast cortical protein KAR9
    8.5e-98  326.2   0.8    1.3e-97  325.6   0.8    1.3  1  AOX              Alternative oxidase
  ------ inclusion threshold ------
      0.054   12.7   0.2      0.054   12.7   0.2    3.1  4  PLU-1            PLU-1-like protein
       0.16   12.2   0.8       0.29   11.3   0.1    1.8  2  TolB_N           TolB amino-terminal domain
       0.19   11.8   3.0         11    6.1   0.6    2.9  2  bZIP_1           bZIP transcription factor
       0.22   11.6   8.2       0.41   10.6   0.3    4.0  5  Laminin_II       Laminin Domain II
       0.51   10.7   2.9        2.9    8.3   2.9    2.4  1  Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
       0.54   10.4   3.3       0.88    9.8   0.4    2.7  2  Cnn_1N           Centrosomin N-terminal motif 1
       0.98    9.3   6.4         12    5.7   0.1    2.5  2  SPX              SPX domain
        3.1    7.9   6.1        7.7    6.7   0.0    3.2  3  DUF5595          Domain of unknown function (DUF5595)


Domain annotation for each model (and alignments):
>> KAR9  Yeast cortical protein KAR9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   4.4       2.9   5.3e+03     559     650 ..     329     417 ..     299     452 .. 0.51
   2 !  500.8   2.9  3.9e-153  6.9e-150       1     431 [.     455     909 ..     455     929 .. 0.97

  Alignments for each domain:
  == domain 1  score: -4.4 bits;  conditional E-value: 2.9
        KAR9 559 papsrssrssstlp.pvsPlerkkskspsP.taRsvsrvsarrasskptviaspnsrtslldepkyskltlrkalertersrqsYagtslsrss 650
                 p+ps++     + p p +++++ ++++ +P ++   s+++  +as+ pt ++  +   s+l+ ++ s     +++   e+s   Y+ t +   s
  KKY20765.1 329 PHPSTGLYG-GKSPrPSNSDHNSDAQQLAPlHLVLRSSIGCTVASAIPTSTSVFTD--SVLNGMSASA--GTRTMVDEEQSPSVYNTTTPASRS 417
                 444444332.4444456666666667777876666777777777777766555544..5555555555..333334444444444443332211 PP

  == domain 2  score: 500.8 bits;  conditional E-value: 3.9e-153
        KAR9   1 s.sndLsqltkilldiplyLeasiaainnaqaavraltgaaeqiqkWike....................GregldeldkaiekieslisvylkaiEev 78 
                 s s +Ls lt+++l+++++L as+aai++a++av++lt +a +iqkW+++                    Gr++ld++d a++k+e li+vy++aiEe 
  KKY20765.1 455 SmSSQLSGLTSMTLPQAESLAASVAAIPTAPKAVKQLTASAAEIQKWTQKaikvlgnldadddvewaaaaGRDALDDVDTAVNKFERLIEVYVQAIEEL 553
                 5589*********************************************************************************************** PP

        KAR9  79 qlredia...addlknivaqmeeisdlllevkkllivvKkqvelAmeyeELwnsvlgdlgeEiedliklileleekrlss........pkkgldifeLe 166
                 q r d++     dl+++v qme++++ +  v+kll+ v +qvelAme+eELw  vlgd+g+E e+l  l++e+ee+r++         p+ g+d  eLe
  KKY20765.1 554 QMRSDVSdidGGDLTAVVEQMETTLKDWDLVRKLLKEVHEQVELAMEWEELWGVVLGDVGNELESLEHLVFEMEERRHKAmradaenkPTAGIDLDELE 652
                 ****99998899*************************************************************************************** PP

        KAR9 167 tiveemkintsttfsnkrlslptf...........nplDeklysdlleLeariqPLraSLdfLPmrlseFqsraeklfpsaceeledrrerLvkkykkL 254
                 tivee+++  + t +n r slp+            np D+   ++ll+L+ar+qPLraSLdfLPmrls+Fqsraek+fpsac ele++r rL+k++k+L
  KKY20765.1 653 TIVEETPSAPK-TPANYRYSLPPAltaapaspvaqNPEDD---KNLLALFARMQPLRASLDFLPMRLSMFQSRAEKIFPSACAELEEKRIRLEKSWKQL 747
                 ********955.9**********88***************...9******************************************************* PP

        KAR9 255 ekdaealkkeliedrWnlvFrnlikeiqkmcdsversleklqeale...qlnnptalakriesdeakkkykvcaIervlsiIqKavkdrlivngeiarl 350
                 ek+ae+l++el+edrW+lvFrn+++++ km++svers++kl+eal+   +++np+alak++es+eak++++++aI+rvl iIqK+vkdrl+vngei+rl
  KKY20765.1 748 EKEAETLRRELGEDRWILVFRNAGRQATKMIESVERSVAKLREALDtgvHHSNPPALAKKVESFEAKRVHYGPAIDRVLLIIQKGVKDRLTVNGEILRL 846
                 *************************************************************************************************** PP

        KAR9 351 lndLaskwdalkesiDlnldvesssvplsvekkrvkdvlleelskskgrqlrdSvssilteDspatlsaiktPgsspassv 431
                 + dL+++++ l +++                   ++ + le+ +  ++ q+rdS+s+++++D+++++s i+tP s+   + 
  KKY20765.1 847 HLDLTERVEILHQQM------------------DAMQAALEDVNSERDSQIRDSISTLISMDRSMSGSFIETPASKIVLKL 909
                 ***************..................9*****************************************955544 PP

>> AOX  Alternative oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.6   0.8  7.3e-101   1.3e-97       3     215 .]      82     309 ..      80     309 .. 0.99

  Alignments for each domain:
  == domain 1  score: 325.6 bits;  conditional E-value: 7.3e-101
         AOX   3 eeelesvklahrepktlsDkvaiglvkllRwlaDlvtre..............kkleltekkylhRaifLetvAgvpgmvaavlrhLrslrlmkrdkgw 87 
                  +e+++v++ahr+p+++ Dk+a+++v+llRw +D++t++              k+++++e+k++ R+ifLetvAgvpgmv+a lrhL+slr+mkrd+gw
  KKY20765.1  82 ADEMKAVEVAHRQPRNWPDKIAYAMVNLLRWGTDKATGYhhqmeietaekkgnKSYAMDERKWMIRFIFLETVAGVPGMVGASLRHLHSLRRMKRDNGW 180
                 6799*********************************************************************************************** PP

         AOX  88 irtlleeaenermHllvllklaeptlleRllvllaqgvffniflllYllsPrvahrlvgyleEeavvtYtqliedideGkleewekvkaPeiAlqYwkl 186
                 i++lleea+nermHll+++klaep++++++++l+aqgvf+n f+l+YllsPr++hr+vgyleE+av tYt++++d+++G+l++we+++aP+iA++Yw++
  KKY20765.1 181 IESLLEEAYNERMHLLTFMKLAEPGWFMKMMILGAQGVFYNGFFLSYLLSPRICHRFVGYLEEQAVNTYTHALHDLESGRLPAWENMEAPDIAVKYWEM 279
                 *************************************************************************************************** PP

         AOX 187 .qeeatlrdvilliRaDEakhrdvnhtlan 215
                  + ++tlrd++++iRaDE+khr+vnhtl+n
  KKY20765.1 280 pEGHRTLRDLLYYIRADESKHREVNHTLGN 309
                 8889***********************987 PP

>> PLU-1  PLU-1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2     3e-05     0.054     225     311 ..     442     554 ..     406     561 .. 0.75
   2 ?   -4.0   0.2       3.5   6.3e+03     202     219 ..     585     602 ..     567     604 .. 0.63
   3 ?    1.8   0.0     0.059   1.1e+02     103     144 ..     615     658 ..     610     662 .. 0.77
   4 ?   -0.6   0.2      0.33   5.9e+02     153     210 ..     750     813 ..     715     886 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3e-05
       PLU-1 225 l.................LeareklsleeLeallneaqeipvslpslaaleeilkkarewqrkveelikssq........daaerptlseleellkkge 298
                 l                 L+   +++l++ e+l  +++ ip++   +++l +     ++w++k+ ++  ++          aa r  l++++  ++k e
  KKY20765.1 442 LtradsifsfskssmssqLSGLTSMTLPQAESLAASVAAIPTAPKAVKQLTASAAEIQKWTQKAIKVLGNLDadddvewaAAAGRDALDDVDTAVNKFE 540
                 444455555555555555788889999999999999999999999999999999999999999999988888888887776667799999999999997 PP

       PLU-1 299 s.lpvkleeleqLe 311
                   + v+++ +e+L+
  KKY20765.1 541 RlIEVYVQAIEELQ 554
                 77999999988887 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 3.5
       PLU-1 202 eellaelqelleaaekwe 219
                  +ll+e++e++e a +we
  KKY20765.1 585 RKLLKEVHEQVELAMEWE 602
                 355666666666666666 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.059
       PLU-1 103 eieqLkelleeieefqkkarellsee..sedssieeleklieeG 144
                 e+e+L++l+ e ee + ka ++ +e+  +  ++++ele+++ee+
  KKY20765.1 615 ELESLEHLVFEMEERRHKAMRADAENkpTAGIDLDELETIVEET 658
                 78899999999999999988887776334456888999998886 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.33
       PLU-1 153 eleeLkkvleqlkWleevrev.reek.....kqltleevkeLieeGeelaippek.eellaelqe 210
                 e e L++ l + +W+  +r++ r+ +      + +   ++e +++G+  ++ p++  ++++ +++
  KKY20765.1 750 EAETLRRELGEDRWILVFRNAgRQATkmiesVERSVAKLREALDTGVHHSN-PPAlAKKVESFEA 813
                 567777777777888777777633222333233677777777777777776.4444666665555 PP

>> TolB_N  TolB amino-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1         9   1.6e+04      56      77 ..     489     508 ..     479     509 .. 0.64
   2 ?   11.3   0.1   0.00016      0.29       2      56 ..     853     906 ..     852     915 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 9
                 S---SSGGG--HHHHHTTT-SE CS
      TolB_N  56 pqkpsseaevdfadWkalgada 77 
                 +q +  +++ ++++W+++ +++
  KKY20765.1 489 KQLT--ASAAEIQKWTQKAIKV 508
                 3333..6778888999887766 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00016
                 XXEEEESGGGSEEEEE---EESSSS.S-SS-HHHHHHHHHHHTTSEEE--GGG-S CS
      TolB_N   2 eieItkggaealpiAvvpfksegsaeelaediseviaaDLerSGlFrpldksafp 56 
                 ++eI +++ +a++ A  +++se ++ ++ ++is  i+ D ++SG F   + s++ 
  KKY20765.1 853 RVEILHQQMDAMQAALEDVNSERDS-QIRDSISTLISMDRSMSGSFIETPASKIV 906
                 79*********************99.********************999888765 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.6    0.0064        11      28      55 ..     730     757 ..     727     760 .. 0.64
   2 ?    4.5   0.1     0.021        38      30      57 ..     849     876 ..     847     880 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0064
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  28 ieeLerrvkaLekeNksLkseleelkke 55 
                 ++eLe++   Lek  k+L +e+e+l+ e
  KKY20765.1 730 CAELEEKRIRLEKSWKQLEKEAETLRRE 757
                 5666666666666666666666666544 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.021
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  30 eLerrvkaLekeNksLkseleelkkeve 57 
                  L++rv+ L +++ +++  le  + e++
  KKY20765.1 849 DLTERVEILHQQMDAMQAALEDVNSERD 876
                 599*****************99998876 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3   0.00023      0.41      13      85 ..     485     560 ..     475     579 .. 0.73
   2 ?   -1.9   0.0       1.8   3.2e+03      21      56 ..     569     604 ..     565     633 .. 0.58
   3 ?   -0.9   0.0      0.85   1.5e+03      20      73 ..     702     756 ..     693     765 .. 0.69
   4 ?    1.9   0.3      0.11     2e+02      48      69 ..     772     793 ..     729     831 .. 0.69
   5 ?    0.1   0.1      0.41   7.4e+02      18      52 ..     853     884 ..     839     909 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00023
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH. CS
  Laminin_II  13 kevleqlaplsqnlentkeklseinrsve...etnekvkdankairdArrsvkkLeklapqLldklkelkqleeas 85 
                  +  +ql++ +++++++ +k+ ++ ++++    ++  + +   a++d+ ++v k e+l+++ ++ ++el+++++ s
  KKY20765.1 485 PKAVKQLTASAAEIQKWTQKAIKVLGNLDaddDVEWAAAAGRDALDDVDTAVNKFERLIEVYVQAIEELQMRSDVS 560
                 4444566666677777777777776665411045555668889***************************999875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.8
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II  21 plsqnlentkeklseinrsveetnekvkdankaird 56 
                 ++ +++e t ++   +++ ++e++e+v+ a++  ++
  KKY20765.1 569 AVVEQMETTLKDWDLVRKLLKEVHEQVELAMEWEEL 604
                 555566666666666677777777777666665554 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.85
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX--TTTTTGG CS
  Laminin_II  20 aplsqnlentkeklseinrsveetnekvk.dankairdArrsvkkLeklapqLld 73 
                 +pl + l+ +   ls +++ +e++   +  ++ +     ++s k+Lek+a+ L  
  KKY20765.1 702 QPLRASLDFLPMRLSMFQSRAEKIFPSACaELEEKRIRLEKSWKQLEKEAETLRR 756
                 5666666666666677777777766554435555555668899999999998865 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.11
                 XXXXXXXXXXXXXXXXX--TTT CS
  Laminin_II  48 kdankairdArrsvkkLeklap 69 
                 ++a+k+i++++rsv kL + ++
  KKY20765.1 772 RQATKMIESVERSVAKLREALD 793
                 4788888888888888887765 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.41
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II  18 qlaplsqnlentkeklseinrsveetnekvkdank 52 
                  ++ l+q+++ +++ l+ +n++    + +++d+  
  KKY20765.1 853 RVEILHQQMDAMQAALEDVNSE---RDSQIRDSIS 884
                 3344444444444444444444...2233333333 PP

>> Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.9    0.0016       2.9       2      29 ..     733     760 ..     732     764 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
  Val_tRNA-synt_C   2 vekeraRLeKeLaklekeiervqkKLan 29 
                      +e+ r RLeK+ ++leke+e++++ L  
       KKY20765.1 733 LEEKRIRLEKSWKQLEKEAETLRRELGE 760
                      79999*****************998875 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.4   0.00049      0.88      21      66 ..     713     758 ..     711     762 .. 0.92
   2 ?   -0.9   0.2       1.1   1.9e+03      42      70 ..     844     872 ..     836     881 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00049
      Cnn_1N  21 LriyfLeerleklseeqkeellkenielkveveslqkelkekkkll 66 
                 +r+ + ++r ek+ ++   el++++i l+   ++l+ke ++++++l
  KKY20765.1 713 MRLSMFQSRAEKIFPSACAELEEKRIRLEKSWKQLEKEAETLRREL 758
                 899999***********************************99988 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.1
      Cnn_1N  42 lkenielkveveslqkelkekkkllreae 70 
                 l+   +l ++ve l +++++++  l++ +
  KKY20765.1 844 LRLHLDLTERVEILHQQMDAMQAALEDVN 872
                 55566788888888888888888887765 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   2.5     0.015        26      24     162 ..     285     450 ..     273     518 .. 0.61
   2 ?    5.7   0.1    0.0068        12     207     258 ..     849     898 ..     845     913 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.015
         SPX  24 qLKKlIkkvqreleslgleaetlrellnrpedskkksse.rtepstsaaadesgnsaadasssepkdeae............................. 92 
                 +L  l++ +++++ + +  + tl +l  + ++++  s++ +++++++++   +g+s ++++s+  +d ++                             
  KKY20765.1 285 TLRDLLYYIRADESKHREVNHTLGNLDPKVDPNPYVSTYkDNAQPHPSTGLYGGKSPRPSNSDHNSDAQQlaplhlvlrssigctvasaiptstsvftd 383
                 567777778886667788888888888888888888888766666666666666666666666666666688888888888888888877777766554 PP

         SPX  93 .......slprrsplsrssrssssygglvssppsansssssddssesnpadssssssssesesssssspsllrrlfs 162
                        +          s  +++  + ++sp+  n+++  ++s ++ ++   +s++++ + +++ ss ++  ++fs
  KKY20765.1 384 svlngmsA----------SAGTRTMVDEEQSPSVYNTTTPASRSANDLQEYLRQSTTENGEPTERLSSLTRADSIFS 450
                 44444442..........33334444444444444444444444444422111111112222222222222222222 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0068
         SPX 207 efterlesLrkqleal.rprrikeaeerksdlyrwreifglksveaqvfessr 258
                 ++ter+e+L +q++a+ +++      ++ +d +++ +i+ l s++++++ s  
  KKY20765.1 849 DLTERVEILHQQMDAMqAALE---DVNSERDSQIRDSISTLISMDRSMSGSFI 898
                 589*************44432...33444677888889999888888777655 PP

>> DUF5595  Domain of unknown function (DUF5595)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0043       7.7      27      59 ..     525     556 ..     523     562 .. 0.89
   2 ?    2.8   0.4      0.07   1.2e+02      52      73 .]     729     750 ..     720     750 .. 0.88
   3 ?   -2.7   0.1       3.7   6.6e+03      38      64 ..     846     872 ..     845     878 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0043
     DUF5595  27 geDtFeeedaeleskLkelynvdeaqlesleee 59 
                 g+D  +++d+++ +k+++l +v+ + +e+l++ 
  KKY20765.1 525 GRDALDDVDTAV-NKFERLIEVYVQAIEELQMR 556
                 789999999997.79***************986 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.07
     DUF5595  52 qlesleeeekrLeeEierleke 73 
                   ++lee++ rLe+  ++leke
  KKY20765.1 729 ACAELEEKRIRLEKSWKQLEKE 750
                 5689*****************8 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.7
     DUF5595  38 leskLkelynvdeaqlesleeeekrLe 64 
                 l+  L e +++  +q+ ++++  +  +
  KKY20765.1 846 LHLDLTERVEILHQQMDAMQAALEDVN 872
                 566788888889999999988665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (940 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      631  (0.0351944); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.91u 0.37s 00:00:01.28 Elapsed: 00:00:00.54
# Mc/sec: 5194.11
//
Query:       KKY20766.1  [L=519]
Description: hypothetical protein UCRPC4_g04133 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.50
# Mc/sec: 3153.07
//
Query:       KKY20767.1  [L=338]
Description: putative mfs transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-24   84.6   5.2    6.6e-24   84.5   5.2    1.1  1  MFS_1     Major Facilitator Superfamily
    2.9e-14   52.8   0.2    4.1e-14   52.3   0.2    1.2  1  Sugar_tr  Sugar (and other) transporter
     0.0095   14.5   8.0      0.015   13.9   5.8    2.1  2  MFS_2     MFS/sugar transport protein
  ------ inclusion threshold ------
      0.056   12.4   2.3      0.072   12.0   2.3    1.2  1  MFS_5     Sugar-tranasporters, 12 TM
      0.093   11.1   2.7       0.11   10.9   2.7    1.1  1  TRI12     Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   5.2   1.8e-27   6.6e-24       6     194 ..      65     261 ..      63     334 .. 0.80

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 1.8e-27
       MFS_1   6 flsalarsilgpalpl.al.......aedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslwlllvlrvl 94 
                 f++++ ++i+++a+p  +l       + +lg s   i+ l +   l+ + + +++ +l++++G r+ ++++ ++ ++g+++++ +    + +l+++r++
  KKY20767.1  65 FFVIFFSTIVLAAVPApILssavvvlSLELGKSLNDISELSGYQLLVVGCFGPIVCALATKYGKRPQFVFASIMAVIGTAICV-GarDKYDMLFAGRLI 162
                 556666666555555544433333337779999999**99999999********************99999999999944444.3345555******** PP

       MFS_1  95 qGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgp 193
                 qG+g+ a+ ++++a++ d++   er++ +g++ ++  + ++l++++gg ++++lgWr++f+i+ ++ ++++   +++lpe++ +r+  +p    +g+++
  KKY20767.1 163 QGFGTTAFESLSVAALGDIYFVHERPMRTGIMVLTLTCVSALAAIIGGPITEHLGWRYLFIIHLPFVVICCPATVFFLPETQYTRQVATPSAS-QGDVQ 260
                 **********************************************************************77766777777766666666655.33333 PP

       MFS_1 194 a 194
                 +
  KKY20767.1 261 K 261
                 3 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.2   1.1e-17   4.1e-14      57     214 ..     111     264 ..     101     320 .. 0.80

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 1.1e-17
                 HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  57 vGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaa 155
                 v++ +G ++   l++++G+++ +++a++++vig+++++ a    ++ +l++gR++ G+g  ++  l+   ++ i   + R + +++  l +t    +aa
  KKY20767.1 111 VVGCFGPIVCA-LATKYGKRPQFVFASIMAVIGTAICVGAR--DKYDMLFAGRLIQGFGTTAFESLSVAALGDIYFVHERPMRTGIMVLTLTCVSALAA 206
                 44555665555.999**************************..56****************************************************** PP

                 HHHHHHHTSS-TTHHHHHHHCCHHHHHHHH.HHGGGS---HHHHHHTT-HHHHHHHHHH..H CS
    Sugar_tr 156 ifglglnktsnadgwrillglqlvpallll.illlflPESPrylvekgkeeeakevlak..l 214
                 i+g  + +  +   wr+l+ + l + ++ + + ++flPE+  y+ ++   ++++  ++k  +
  KKY20767.1 207 IIGGPITEHLG---WRYLFIIHLPFVVICCpATVFFLPET-QYTRQVATPSASQGDVQKppS 264
                 99988776666...**********99999945679*****.888888877777776666333 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   5.8   4.1e-06     0.015     261     343 ..     101     182 ..      61     209 .. 0.78
   2 ?    0.4   0.2     0.052   1.9e+02      35      80 ..     191     238 ..     186     251 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.1e-06
       MFS_2 261 asvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpwsmladvv 343
                 +s +++   + +  + p++ +la+++gk+  ++++++++++++++++ +   ++ ++++  +i gfg+ ++ +l  + l+d++
  KKY20767.1 101 ISELSGYQLLVVGCFGPIVCALATKYGKRPQFVFASIMAVIGTAICVGA-RDKYDMLFAGRLIQGFGTTAFESLSVAALGDIY 182
                 555555555555567799*******************************.*************************99999984 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.052
       MFS_2  35 vglvllvarlvDaitDpivGtlidktstrwGrrr.....Pwlllsaiilav 80 
                  g+++l+   v+a+  +i G +++++ +   r++     P+++++ +++++
  KKY20767.1 191 TGIMVLTLTCVSALAAIIGGPITEHLGW---RYLfiihlPFVVICCPATVF 238
                 5666666666777777777777776666...55555555666666665553 PP

>> MFS_5  Sugar-tranasporters, 12 TM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.3     2e-05     0.072      84     198 ..     114     228 ..      66     240 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2e-05
       MFS_5  84 lfgtivgsladkfgrkracltyail.yilacit.khsgeykvlmigrvlggiatsllysafeswlvaehnkrgfdds..llsivfskaiflgnslvaii 178
                  fg iv +la k+g++ + +  +i+  i++ i      +y++l+ gr++ g  t+    afes  va      f ++  + + ++  ++    +l aii
  KKY20767.1 114 CFGPIVCALATKYGKRPQFVFASIMaVIGTAICvGARDKYDMLFAGRLIQGFGTT----AFESLSVAALGDIYFVHErpMRTGIMVLTLTCVSALAAII 208
                 59**************99988777524555554145678*************995....7777777766555554331111222222233445677777 PP

       MFS_5 179 aglaanllaerlgfgpvapf 198
                  g +++ l  r+ f    pf
  KKY20767.1 209 GGPITEHLGWRYLFIIHLPF 228
                 77777777666666555566 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.7   3.1e-05      0.11      98     209 ..     119     232 ..      65     255 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.1e-05
       TRI12  98 mgrltdrfgrrpfvilthilglvgaivgcta.tkfntllaamtllgvaagpaga.splfvgelmsnktkflgllivsipvvvtsglspylgqrlaiqgs 194
                 +  l+ ++g+rp  + + i+ ++g+ + + a +k++ l+a   + g  +    + s   +g++   + + +   i+ +   ++s+l+  +g  ++    
  KKY20767.1 119 VCALATKYGKRPQFVFASIMAVIGTAICVGArDKYDMLFAGRLIQGFGTTAFESlSVAALGDIYFVHERPMRTGIMVLTLTCVSALAAIIGGPITEHLG 217
                 567999******9999*******97666555279******999999887765552667889988777766655555555666677999*********** PP

       TRI12 195 wrwifyiyiitsaia 209
                 wr++f i++    i+
  KKY20767.1 218 WRYLFIIHLPFVVIC 232
                 *****9987666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.51
# Mc/sec: 2006.39
//
Query:       KKY20768.1  [L=301]
Description: hypothetical protein UCRPC4_g04135 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-28   98.0   0.0    5.8e-28   97.6   0.0    1.2  1  SnoaL_4        SnoaL-like domain
    0.00047   19.9   1.9    0.00073   19.3   1.9    1.3  1  DivIC          Septum formation initiator
     0.0094   16.7   1.2      0.016   16.0   1.2    1.3  1  Rho_Binding    Rho Binding
  ------ inclusion threshold ------
      0.017   15.3   1.6      0.028   14.6   1.6    1.3  1  ABC_tran_CTD   ABC transporter C-terminal domain
      0.021   14.8   0.5      0.043   13.9   0.5    1.4  1  DUF1192        Protein of unknown function (DUF1192)
        0.2   12.2   1.5       0.31   11.6   1.5    1.2  1  bZIP_Maf       bZIP Maf transcription factor
       0.38   10.8   2.8       0.66   10.0   2.8    1.3  1  Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain
       0.49   10.8   3.7       0.65   10.4   3.7    1.2  1  DUF4200        Domain of unknown function (DUF4200)


Domain annotation for each model (and alignments):
>> SnoaL_4  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.0   2.6e-31   5.8e-28       2     126 ..      31     174 ..      30     175 .. 0.86

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 2.6e-31
                 HHHHHHHHHHHHHHHHHHHHTT-HHHHHTTEEE..EEEEEETTS..--EESHHHHHHHHHSHHHHHH...........-EEEEE---EEEEETTEEEEE CS
     SnoaL_4   2 rledreaIrdlvarygyylDtkdweeladlFte..davvdytgvgegvlegrdairaalrealdgfa...........ltqHllsnplieldgdtAtgr 87 
                 r++d+++I+++  +ygyylD++ ++e++d+F +  da+v++ g   g+++g+++i++++ +++ ++            l +H++ +p++++d +  +++
  KKY20768.1  31 RVSDEAEIQKVHFKYGYYLDKCLYKEVVDMFSDhpDAYVEFLG---GRYRGKEGIKRLYIGRFSNYFvngrngpiygfLLDHPMLQPIVDVDKTGTHAW 126
                 899****************************7777*******7...8**************8886665555566688888***********88777777 PP

                 EEEEEEEEETT.........EEEEEE..EEEEEEEEEEETTEEEEEEE CS
     SnoaL_4  88 ayllatlvrdg.........dggrqvlaggryedelvredggWrisrr 126
                 +++ a + ++          +g+ q+++gg ye+e+++e+g+W++ r+
  KKY20768.1 127 CRMRALMSAGLhqsiqeehpRGHAQWWEGGLYENEYIKENGVWKLFRY 174
                 77777754433669**99998899********************9987 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   1.9   3.2e-07   0.00073      20      60 ..       2      41 ..       1      50 [. 0.91

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.2e-07
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXX CS
       DivIC 20 kqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieer 60
                k+++q+++  +aela+lk++ ++L+ e+++  sde+ i+++
  KKY20768.1  2 KKKHQNLDNMEAELAELKQQVKALQTEISRV-SDEAEIQKV 41
                7899***************************.8*****985 PP

>> Rho_Binding  Rho Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.2   7.3e-06     0.016       3      44 ..       6      46 ..       5      56 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.3e-06
  Rho_Binding  3 kdvenlakekeelnkklkkleeelekakeeeeeieklkasye 44
                 ++++n++ e  el++++k l+ e+++ + +e+ei+k++ +y 
   KKY20768.1  6 QNLDNMEAELAELKQQVKALQTEISRVS-DEAEIQKVHFKYG 46
                 6899***********************9.7999*99998875 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   1.6   1.3e-05     0.028       5      47 ..       3      42 ..       1      46 [. 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.3e-05
  ABC_tran_CTD  5 keqreleeleaeIeaLEeeiaeleaeladpelysdpeklaels 47
                  k+ + l+++eae+++L ++ ++l++e++     sd++++++++
    KKY20768.1  3 KKHQNLDNMEAELAELKQQVKALQTEISRV---SDEAEIQKVH 42
                  66778***********************88...7999999886 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.5   1.9e-05     0.043      15      44 ..       6      37 ..       2      42 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.9e-05
     DUF1192 15 qDLslLS..veELeerIalLeaEIaRleaaia 44
                q+L+++   ++EL++ +++L+ EI R++++ +
  KKY20768.1  6 QNLDNMEaeLAELKQQVKALQTEISRVSDEAE 37
                55555541157****************98765 PP

>> bZIP_Maf  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.5   0.00014      0.31      47      84 ..       2      39 ..       1      45 [. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
    bZIP_Maf 47 krrlqqkeelekekeeleeelerlqqelsrlrqekdal 84
                k++ q+ +++e+e +el++++++lq e+sr++ e + +
  KKY20768.1  2 KKKHQNLDNMEAELAELKQQVKALQTEISRVSDEAEIQ 39
                7999***************************9998765 PP

>> Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.8   0.00029      0.66       9      37 ..       7      35 ..       2      42 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00029
  Bap31_Bap29_C  9 eLkkkkkDlealKkQaeglakEYDrLade 37
                    L+ ++++l  lK+Q + l+ E  r++de
     KKY20768.1  7 NLDNMEAELAELKQQVKALQTEISRVSDE 35
                   678888*********************99 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.7   0.00029      0.65      70     116 ..       3      52 ..       1      55 [. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00029
     DUF4200  70 eerklkkekeaeikklkaeietlkseiekleekleeykk...YeefLekv 116
                 +++++ +++eae+++lk+++++l++ei++  ++ e  k    Y  +L+k 
  KKY20768.1   3 KKHQNLDNMEAELAELKQQVKALQTEISRVSDEAEIQKVhfkYGYYLDKC 52 
                 566677889*******************9987766555434488888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1249  (0.0696637); expected 358.6 (0.02)
Passed bias filter:                     1162  (0.0648112); expected 358.6 (0.02)
Passed Vit filter:                       294  (0.016398); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.68u 0.40s 00:00:01.08 Elapsed: 00:00:00.57
# Mc/sec: 1590.29
//
Query:       KKY20769.1  [L=185]
Description: putative glycoside hydrolase family 12 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.30s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1206.42
//
Query:       KKY20770.1  [L=540]
Description: putative multicopper oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-38  132.0   2.7      1e-38  132.0   2.7    2.5  2  Cu-oxidase_3  Multicopper oxidase
    1.1e-38  132.0   1.5    1.1e-38  132.0   1.5    2.5  2  Cu-oxidase_2  Multicopper oxidase
      1e-33  116.7   0.1    1.1e-31  110.2   0.0    2.6  2  Cu-oxidase    Multicopper oxidase


Domain annotation for each model (and alignments):
>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.0   2.7   1.7e-42     1e-38       2     117 ..      48     162 ..      47     164 .. 0.95
   2 ?   -2.7   0.0      0.97   5.8e+03      88     109 ..     479     500 ..     466     504 .. 0.71

  Alignments for each domain:
  == domain 1  score: 132.0 bits;  conditional E-value: 1.7e-42
                   EEEEEEECTTEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-S.SS-B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEEEEE CS
  Cu-oxidase_3   2 vtektvsplggterevitvNgqfpgptievregdtvvvnvtNkl.dentsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtlwYh 97 
                   ++++t++p+g +  +v ++Ng+fpgpti +++gdtvvv++tN l +++t +h+hG++q++ts mDGvp +tqcpi+pg+s+ty++++ q +gt wYh
    KKY20770.1  48 IENTTAAPDGVE-LPVQLINGSFPGPTIIADWGDTVVVHLTNTLqSNGTGLHFHGIRQNWTSNMDGVPSITQCPIAPGDSYTYSWRAVQ-YGTGWYH 142
                   677888888876.*******************************8899*****************************************.******* PP

                   E--TTHHHTT-EEEEEEE-H CS
  Cu-oxidase_3  98 shlslqqaaGlaGaiiiedk 117
                   sh+  q ++G++G ii++ +
    KKY20770.1 143 SHFYVQAWNGVFGGIIVNGP 162
                   ******9**********987 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.97
                   -S-SEEEEEEE--TTHHHTT-E CS
  Cu-oxidase_3  88 kqqagtlwYhshlslqqaaGla 109
                   +++ g  + h h++++  +G a
    KKY20770.1 479 TNNPGAWLMHCHIAWHTSEGFA 500
                   3447888889999998878765 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   1.3       0.2   1.2e+03      36      63 ..      75     103 ..      48     160 .. 0.70
   2 !  132.0   1.5   1.9e-42   1.1e-38       2     135 ..     382     507 ..     374     509 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.2
                   EEETTEEEEEEEEE-SSS.-EEEEESS-E CS
  Cu-oxidase_2  36 tlpkgevveiviqnntkl.pHPfHlHGhd 63 
                    ++ g++v + ++n+ +     +H+HG +
    KKY20770.1  75 IADWGDTVVVHLTNTLQSnGTGLHFHGIR 103
                   55557777777777777754678888865 PP

  == domain 2  score: 132.0 bits;  conditional E-value: 1.9e-42
                   XS-SCCCCCCCEEEEEEEEEEEETC.CTTTSSEEEEEET.TEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE- CS
  Cu-oxidase_2   2 vppklptllqltsgneeaseitnge.efsentnvitlpk.gevveiviqnntklpHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvp 96 
                   ++++ ptllq++          +g+ ++  +++v+++p+ +++v++v++ +    HP+HlHGhdf+vl++g gn ++ +++s+ l+n++rrd++++p
    KKY20770.1 382 TEWNYPTLLQVA----------EGNdTWAAKQQVVQVPEaDKWVYLVVHSPFAQDHPMHLHGHDFWVLASGYGNFDSSQTDSLTLVNAPRRDVAMMP 468
                   567888888888..........444489999999999999**********************************999999***************** PP

                   TTEEEEEEEES.S-EEEEEEESSHHHHHTT-EEEEEEEC CS
  Cu-oxidase_2  97 pggwvairfkadnpGvwllHCHilwHldqGmalqfvvrp 135
                   ++g+++i+f ++npG+wl+HCHi+wH+++G+a+q+++r+
    KKY20770.1 469 ASGYLVIAFITNNPGAWLMHCHIAWHTSEGFAMQILERE 507
                   ************************************997 PP

>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.0   1.8e-35   1.1e-31       5     158 ..     174     317 ..     172     318 .. 0.87
   2 !    4.0   0.0    0.0084        50      57     124 ..     401     468 ..     329     494 .. 0.79

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 1.8e-35
                 EEEEEETCBCTTSCBC.HSSCHCHHHHHTT--SEEEETTBSS.......CTTTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEEEETCETTS CS
  Cu-oxidase   5 itlsDwyhkdakelekellasgkapadtppvpdavlingkggfnatladkdgaslatltvepgktyrlriinvsaddslnfsIeGHkltVvevDgvyve 103
                 + l+Dwyh++a++l+  ++a+g      pp++ + ling++++n tl +      +++++e+g +yrlr++n++ad+++ f I++H l V++ D+v++ 
  KKY20770.1 174 LFLNDWYHDTADDLVL-QAATGG-----PPTAPNGLINGTNTYNDTLGS-----RFETAIEAGTKYRLRLVNAAADSHFLFMIDNHILEVIANDFVPIV 261
                 579**********999.444443.....788999********9977555.....9******************************************** PP

                 EEEESCEEE-TTEEEEEEEEE-S.SSEEEEEEEEGSSSCHHHHTTSEEEEEEEEST CS
  Cu-oxidase 104 pvevdsldIavGqrysvlvtanq.apgnYwivasgrsnlieafengtaaailryse 158
                 p+++++l I++Gqry+v+v  ++ ++g++wi+a  +   +e++      +ilry++
  KKY20770.1 262 PYNTTQLSIGMGQRYDVIVRGKElTSGDFWIRAIPQESCSETDAVDDIKGILRYDN 317
                 **********************999********73434355556666778888876 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0084
                 TTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEEEETCETTSEEEESCEEE-TTEEEEEEEEE CS
  Cu-oxidase  57 aslatltvepgktyrlriinvsaddslnfsIeGHkltVvevDgvyvepvevdsldIavGqrysvlvta 124
                 a+ ++++v   ++    ++     + +++ ++GH + V ++   + +  ++dsl +  + r +v + +
  KKY20770.1 401 AKQQVVQVPEADKWVYLVVHSPFAQDHPMHLHGHDFWVLASGYGNFDSSQTDSLTLVNAPRRDVAMMP 468
                 455666777777777777888888999***************9999*99*****99999999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3578.81
//
Query:       KKY20771.1  [L=619]
Description: hypothetical protein UCRPC4_g04043 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-57  192.6   1.7    9.5e-57  192.6   1.7    2.2  3  Arylsulfotran_2  Arylsulfotransferase (ASST)
    4.1e-14   52.3   3.6    1.7e-13   50.2   3.6    2.0  1  Arylsulfotrans   Arylsulfotransferase (ASST)
  ------ inclusion threshold ------
        2.6    8.6   5.2        4.8    7.7   5.2    1.4  1  EF-1_beta_acid   Eukaryotic elongation factor 1 beta central 
        5.2    7.1   7.8         13    5.8   7.8    1.6  1  SNN_transmemb    Stannin transmembrane


Domain annotation for each model (and alignments):
>> Arylsulfotran_2  Arylsulfotransferase (ASST)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.2       1.6   7.3e+03       4      25 ..     107     129 ..     105     130 .. 0.76
   2 !  192.6   1.7   2.1e-60   9.5e-57      26     294 ..     149     402 ..     148     407 .. 0.93
   3 ?    0.7   0.0     0.061   2.7e+02      30     103 ..     470     544 ..     467     552 .. 0.77

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1.6
  Arylsulfotran_2   4 lLkdesvitnwegdglk.GfGyG 25 
                         +++ +t+w gd    G+G G
       KKY20771.1 107 QYRGKQYLTFWVGDDKVkGHGSG 129
                      55788999999998655699988 PP

  == domain 2  score: 192.6 bits;  conditional E-value: 2.1e-60
  Arylsulfotran_2  26 tltildssyeeiwkvtldgdfvtpdsesesyidhHeseitedgtilvtavnvtqadltsvggekdgwvldsliyeidietnevlfrwSalehvd 119
                      tlt+l+ssy ++++  + +         +   d+He++it+d t l+t++++++adl++vgg ++gw+ +++++eidiet evlf+w a++hv 
       KKY20771.1 149 TLTKLNSSYHQVHRFRAGN---------KLDGDLHEFHITNDDTALITIYQIVRADLRPVGGSSRGWIWEGIFQEIDIETKEVLFEWRASDHVG 233
                      689************9999.........33359***********************************************************96 PP

  Arylsulfotran_2 120 eipleeskaplgdfgrdeskpedyfHlNsvekfedgdyLiSlrelsslflirpkegkvlWqlqGpkggdfel...dnstfsrQHdariveeted 210
                        +   s   +g  gr+  +++d fH+Nsv+k  +g+yLiS+r l+s+ +i++++g+++W l G+++   +l   + ++f  QH+ar     ++
       KKY20771.1 234 FDQ---SYHDIGRGGRSRGTAWDWFHINSVDKDPEGNYLISSRWLNSVTYINGTSGNIIWVLGGKSNMFKDLsdgHATEFASQHHARWR---DN 321
                      544...448999999**************************************************65333346588899*********8...99 PP

  Arylsulfotran_2 211 kivislfnNentdtnerepttglildvdlqnkevtllrklkdaedeissvsqGsyqllpnghvlveegsigrveeydangkivl 294
                        +i lf+N  +d  +  p+tgl ld+d++ ++v+l  k + ++++i ++sqGs+q+lpng+vl+++g +++  e+  +g++  
       KKY20771.1 322 YTSITLFDN--SDPGPHYPSTGLWLDLDFDAMTVKLRTKYS-SDNKITTESQGSFQVLPNGNVLIGYGHTAQYSEFRRDGTLLC 402
                      99*******..688***************************.**************************************9865 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.061
  Arylsulfotran_2  30 ldssyeeiwkvtldgdfvtpdses.esyidhHeseitedgtilvtavnvtqadltsvgge.kdgwvldsliyeidi 103
                       d++y ++ +v  +g f t++++     +++  ++i++ g il     + +  l+s++ + ++ w+   +i+ +  
       KKY20771.1 470 TDNEYVAVKTVPKKG-FETITDNIgTNKSFIRAVAIDKGGEILGRTKAIERGILKSIKHKhESLWINTVIIVLVAL 544
                      566676776666666.****666669999999************999999999******96666766666665555 PP

>> Arylsulfotrans  Arylsulfotransferase (ASST)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   3.6   3.8e-17   1.7e-13     126     344 ..     211     391 ..      61     409 .. 0.75

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 3.8e-17
  Arylsulfotrans 126 tiievd.ktGkvvkewdlakiLdpyrdallkaakapfgdiagvgagrdWlHiNsveydekddsiivSsRhqsavvkidyrtkkvkWilgdkegwe 219
                        e+d +t +v+ ew++ ++ +  ++ +    ++     +  g+++dW+HiNsv+ d+ +++ ++SsR  + v  i+  ++++ W+lg k+   
      KKY20771.1 211 IFQEIDiETKEVLFEWRASDHVGFDQS-Y----HDIGRGGRSRGTAWDWFHINSVDKDP-EGNYLISSRWLNSVTYINGTSGNIIWVLGGKSNMF 299
                     4469*****************976666.2....33344455556************999.888999************************99877 PP

  Arylsulfotrans 220 kelqkklLtpvdskGkkidleegdfdwtwgqHtavlipngstiiellvFDNgdgrskeqpallspkdnySraveYkideknmTveqvweygkerG 314
                     k+     L            ++g  + +  qH a++ +n    +++++FDN+d   +            S +    +d ++mTv+   +y ++  
      KKY20771.1 300 KD-----L------------SDGHATEFASQHHARWRDNY---TSITLFDNSDPGPHY----------PSTGLWLDLDFDAMTVKLRTKYSSD-- 362
                     77.....3............4588888999******9999...59*******998888..........37889999****************8.. PP

  Arylsulfotrans 315 aefYSsivssveylkdkgnilvdsgaagld 344
                     +++ ++  +s ++l++ gn+l+ +g ++ +
      KKY20771.1 363 NKITTESQGSFQVLPN-GNVLIGYGHTAQY 391
                     69**************.*******988665 PP

>> EF-1_beta_acid  Eukaryotic elongation factor 1 beta central acidic region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   5.2    0.0011       4.8       3      15 ..     592     604 ..     592     605 .. 0.97

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0011
  EF-1_beta_acid   3 GSDDEEEDeEaer 15 
                     GSD+EEE +Eaer
      KKY20771.1 592 GSDEEEENQEAER 604
                     9***********9 PP

>> SNN_transmemb  Stannin transmembrane
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   7.8    0.0029        13      13      30 ..     536     553 ..     534     554 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0029
  SNN_transmemb  13 TVIViLIAvAALGALILG 30 
                    TVI++L+A+AA G L LG
     KKY20771.1 536 TVIIVLVALAAGGILCLG 553
                    9****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 4008.38
//
Query:       KKY20772.1  [L=232]
Description: hypothetical protein UCRPC4_g04044 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-21   75.6   0.0    4.7e-21   75.3   0.0    1.1  1  DUF1349   Protein of unknown function (DUF1349)
  ------ inclusion threshold ------
      0.068   13.3   0.2      0.091   12.9   0.2    1.2  1  CBP_BcsO  Cellulose biosynthesis protein BcsO


Domain annotation for each model (and alignments):
>> DUF1349  Protein of unknown function (DUF1349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.0   5.3e-25   4.7e-21       3     175 ..      10     223 ..       8     225 .. 0.84

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 5.3e-25
                 S--SEEEE-.SSEEEEE--TT--EEESTTT-.-EEE--EEEEEEESS-..EEEEEEEEE---STT-EEEEEEEEE.................TTEEEEE CS
     DUF1349   3 nePksveeseddsleittepktDfWrrthyg.frrdnapflltevagd..ftaevkvkgefkelyDqaGlmlrvd.................eenWlKa 81 
                 n P   + ++ +sl+++++pktD++ ++     +  +ap+ +++++     + +++v+g +  +yDq+Gl++ ++                 +  W+Ka
  KKY20772.1  10 NSPPGLKLDSTSSLSLKASPKTDIYATPVPPeLHVYSAPIAHRRIKTSslSSTKTTVSGVWILQYDQGGLIITLPsrenpdpdasnattwnmHPAWVKA 108
                 677778877889**************998775899*******7777665799999999***************************************** PP

                 EEEE-SSSEEEEEEEEE..SSEEEEEEE--S...B..TTSEEEEEEEETTEEEEEEESSSS-.--EEEEEE--.....S-S-EEEEEEEE-SS-..... CS
     DUF1349  82 gieyndgaprlgsVvtn..gysDwsvsplps...ev.skevwlrlsrrgddlaieysldgen.wkllRlfhld.....adeevkvGvyacsPkr..... 163
                 g+e++dg+p +++V     g  Dws+ p+++      + +++l+++r +++l i    dge    l+R ++       +++ + +Gvya++P+      
  KKY20772.1 109 GVEVQDGKPYISVVAKArnGWCDWSLVPTNTvndRDsPLKITLEMTRYKNALLIWLI-DGELgKVLVRKVPWVflddeSNDDAFIGVYAARPDPdnvgs 206
                 **************87546888******998886334789**************997.555545555555432233334589***********988999 PP

                 .....S--EEEEEEEEE CS
     DUF1349 164 .....egfevtFsefel 175
                        +ev+F+++++
  KKY20772.1 207 tlpddGKLEVHFEDLQI 223
                 99986689999999886 PP

>> CBP_BcsO  Cellulose biosynthesis protein BcsO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2     1e-05     0.091      50      93 ..      23      67 ..      15     104 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1e-05
    CBP_BcsO 50 dtlsaassvdia.qPvPvsatvlsapasprrvlPssslnvnadqs 93
                 +l a+   di   PvP   +v+sap + rr+  ss+ + ++  s
  KKY20772.1 23 LSLKASPKTDIYaTPVPPELHVYSAPIAHRRIKTSSLSSTKTTVS 67
                56778888888669**********************988776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1621.35
//
Query:       KKY20773.1  [L=521]
Description: putative steroid monooxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-11   42.4   0.4    8.6e-07   27.7   0.1    3.1  3  FMO-like       Flavin-binding monooxygenase-like
    5.8e-07   29.0   0.0      0.061   12.5   0.1    2.9  3  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.7e-06   27.4   0.1     0.0029   16.8   0.0    2.9  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    5.8e-05   22.5   0.1      0.019   14.2   0.0    2.9  3  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    0.00011   22.4   0.0    0.00028   21.1   0.0    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0011   19.0   0.0       0.46   10.5   0.0    3.3  3  NAD_binding_9  FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.011   14.9   0.2       0.78    8.9   0.0    2.9  3  Thi4           Thi4 family
      0.014   14.2   0.1        1.3    7.7   0.1    2.2  2  HI0933_like    HI0933-like protein
      0.021   14.4   0.1        4.8    6.7   0.0    2.4  2  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind
      0.025   15.1   0.2        2.5    8.7   0.0    2.8  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
       0.14   11.4   0.1        1.9    7.7   0.0    2.1  2  Malic_M        Malic enzyme, NAD binding domain


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0   0.00092       1.5       3      41 ..      22      62 ..      20      69 .. 0.81
   2 !   27.7   0.1   5.3e-10   8.6e-07      93     221 ..      67     192 ..      63     240 .. 0.85
   3 !    4.9   0.0    0.0045       7.3     299     334 ..     304     338 ..     287     440 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00092
    FMO-like  3 kvaviGaGvsGlasikccle..egleptcfersddiGGlwr 41
                ++  iGaG sG+   +   e  +++e   +e+  +iGG w 
  KKY20773.1 22 RIVTIGAGASGINVARNVKEhmKNVEFQMYEKNSEIGGTWT 62
                7889********988887663346788999**********6 PP

  == domain 2  score: 27.7 bits;  conditional E-value: 5.3e-10
    FMO-like  93 fakefdllkyiqfkttvcsvkkrpdfstsGqwevvtekegkkesavfdavmvctGhhvnphlplesfpGiekfkGqyfhsrdykepevfkgkrvlviGl 191
                  a++ +l+++i+f+ +v++   + ++    q+++     g + ++     +  +G++ n + p     G++ f+G+++hs  +k    + +k v viG 
  KKY20773.1  67 AAEKSGLIQFIKFQHKVVEAVWN-ESRGVWQFKIENLATGETFQDYAHFFINASGYLNNWKWPD--IAGLQDFQGDLMHSASWKPGTELYDKSVAVIGC 162
                 468889********999875443.33344455555556677777777778899***99999995..78******************************* PP

    FMO-like 192 GnsggdiavelsrtaeqvllstrsGswvls 221
                 G sg ++ +++  + +++    r+ +wv +
  KKY20773.1 163 GSSGIQLVANIQPMVKHLTTFIRQPTWVTA 192
                 *****************99999*****975 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0045
    FMO-like 299 kssvkeltetsaifedgtveedidvvifatGytfaf 334
                  +++ + t +  ++ dg +  ++dv+i atG+ ++f
  KKY20773.1 304 GTEISHATSNGLVLSDGQII-NVDVIICATGFDLSF 338
                 46788889999999999886.79*********8876 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   3.8e-05     0.061       2     173 ..      22     186 ..      21     200 .. 0.63
   2 ?    4.0   0.0     0.015        24       1      54 [.     155     208 ..     155     249 .. 0.68
   3 !   12.1   0.0   5.3e-05     0.086     189     239 ..     290     336 ..     283     343 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.8e-05
                  SEEEE--SHHHHHHHHHHHH..HTS-EEEEETTHCHHHCSHHHHCHHHHHHH.HHHHHH.HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCE CS
                  xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq..agakvtlvelegtclnggcllskallgvae.daeias.evvkklnqgielllgeevvkidpgkkkvklekkkegde 95 
                  ++v iG+G+ G+++a+++++  ++++  ++e  ++   gg +  + +++ ++   + ++ ++        +++ +  v +  +g  ++k+e++ +g++
   KKY20773.1  22 RIVTIGAGASGINVARNVKEhmKNVEFQMYE--KNSEIGGTWTENRYAAEKSgLIQFIKfQH--------KVVEA--VWNESRGVWQFKIENLATGET 107
                  6899****************77799999**4..33334444443322222220222222222........23333..444445555888888888988 PP

                  EEEEESEEEE---E..EE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-E.EEEEES CS
                  xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
  Pyr_redox_2  96 ekiaydklvlAtGs..sprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgke.vtlvea 173
                  ++  ++  + A+G   + + ++i G+++ +g+l  +++s ++   +l +k+++v+G G  G+ l a +  + k+ +t + +
   KKY20773.1 108 FQDYAHFFINASGYlnNWKWPDIAGLQDFQGDL-MHSASWKPG-TELYDKSVAVIGCGSSGIQLVANIQPMVKHlTTFIRQ 186
                  888889999999964467777999997777777.333333332.33444789******99999988888887774554444 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.015
                  CSEEEE--SHHHHHHHHHHHH.HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaq.agakvtlvelegtclnggcllskallgvaedae 54 
                  k+v+viG G  G+++  +++   ++ +t + ++ t+++ g   ++a+ g   +  
   KKY20773.1 155 KSVAVIGCGSSGIQLVANIQPmVKHLTTFI-RQPTWVTAGFGSKYAAPGGTNFNF 208
                  589***********9999998557777888.888888887777666666555554 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 5.3e-05
                  HHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 189 leealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrp 239
                  + eal + +v v +gt++  +++ng    +vl+dg+ i++d ++ a+G+  
   KKY20773.1 290 YLEALVAPNVSVITGTEISHATSNG----LVLSDGQIINVDVIICATGFDL 336
                  678899999*************999....8******************975 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0024       3.9     188     226 ..      17      55 ..       6      59 .. 0.84
   2 !   16.8   0.0   1.8e-06    0.0029     109     226 ..      73     187 ..      64     263 .. 0.81
   3 ?   -0.0   0.0      0.24   3.9e+02     327     341 ..     321     335 ..     303     336 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0024
  K_oxygenase 188 llakkriaVvGsGqSaaeifedllrrqkkvelklvtrse 226
                  ++++ ri+ +G+G S+ ++++++ ++ k+ve +++ +++
   KKY20773.1  17 HARPVRIVTIGAGASGINVARNVKEHMKNVEFQMYEKNS 55 
                  5677899****************9999999998887665 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.8e-06
  K_oxygenase 109 leeqvrfgeeveevepdeeeeeelltveskdaegeeeelearnlvlgvG..tepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaa 204
                  l + ++f+++v e  ++e+++   +++e+  a+ge+ + +a   + + G  ++ k P+++   + + +++Hs++    +  +l  k++aV+G+G S+ 
   KKY20773.1  73 LIQFIKFQHKVVEAVWNESRGVWQFKIEN-LATGETFQDYAHFFINASGylNNWKWPDIAGLQDFQGDLMHSASWKPGT--ELYDKSVAVIGCGSSGI 167
                  445689************98778888886.59*************99997778899**998777789*******99998..7999************* PP

  K_oxygenase 205 eifedllrrqkkvelklvtrse 226
                  +++ ++    k  +l+ ++r++
   KKY20773.1 168 QLVANIQPMVK--HLTTFIRQP 187
                  *9999887766..455555555 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.24
  K_oxygenase 327 etlevdavvlATGYr 341
                  + ++vd++++ATG++
   KKY20773.1 321 QIINVDVIICATGFD 335
                  6789*********96 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2     0.015        24       2      21 ..      25      44 ..      23     111 .. 0.78
   2 !   14.2   0.0   1.2e-05     0.019     124     201 ..     111     191 ..      77     219 .. 0.85
   3 ?   -0.8   0.0      0.43   6.9e+02     249     272 ..     317     339 ..     289     356 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.015
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagl 21
                  iGaG+ G+++a ++k++  
   KKY20773.1 25 TIGAGASGINVARNVKEHMK 44
                 58999999999998887543 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.2e-05
  Pyr_redox_3 124 eAkkviiAtGefdkPnklnipGeek...lvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiek 201
                   A++ i A G+ ++ ++++i G ++     +h++  k  +++ ++ v+ViG + S++    ++  + ++ t ++r+ ++ +
   KKY20773.1 111 YAHFFINASGYLNNWKWPDIAGLQDfqgDLMHSASWKPGTELYDKSVAVIGCGSSGIQLVANIQPMVKHLTTFIRQPTWVT 191
                  49999*****************99754457899999999***********************9999999999999998866 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.43
  Pyr_redox_3 249 tedgkkvevkddvvlatGykpdls 272
                   +dg+ ++  d ++ atG++ +++
   KKY20773.1 317 LSDGQIIN-VDVIICATGFDLSFR 339
                  45554443.466677788876654 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.7e-07   0.00028       2      40 ..      26      66 ..      25      90 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.7e-07
                   E--SHHHHHHHHHHHCC..TEEEEEE-SSSSSSGGG-EECE CS
  NAD_binding_8  2 vGaGlsGlvaAylLaka..gfdvlllekrdrlGGraasyev 40
                   +GaG+sG   A+  +++  +++ + +ek++ +GG ++ +++
     KKY20773.1 26 IGAGASGINVARNVKEHmkNVEFQMYEKNSEIGGTWTENRY 66
                   9***************98899****************9987 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00028      0.46       3      45 ..      26      64 ..      24      72 .. 0.88
   2 ?    2.9   0.0     0.061        99       1      16 [.     158     173 ..     158     255 .. 0.81
   3 ?    1.5   0.0      0.16   2.7e+02     134     154 ..     313     333 ..     297     335 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00028
  NAD_binding_9  3 vGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtd 45
                   +GaG++G+ v++++ ++    +++e +++++++   g+ w ++
     KKY20773.1 26 IGAGASGINVARNVKEHM---KNVEFQMYEKNSEI-GGTWTEN 64
                   9****************6...9*********8887.7888876 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.061
  NAD_binding_9   1 aivGaGprGlavlerL 16 
                    a++G+G +G+ +++++
     KKY20773.1 158 AVIGCGSSGIQLVANI 173
                    89********999887 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.16
  NAD_binding_9 134 qavlladgaslaadaVvLAlG 154
                      ++l+dg+ + +d ++ A+G
     KKY20773.1 313 NGLVLSDGQIINVDVIICATG 333
                    35889***************9 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00048      0.78      20      58 ..      23      61 ..      15      66 .. 0.87
   2 ?    0.7   0.0      0.15   2.5e+02      15      32 ..     152     169 ..     141     203 .. 0.82
   3 ?    0.9   0.0      0.14   2.3e+02     150     172 ..     316     338 ..     294     341 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00048
                EEEE--SHHHHHHHHHHHHC.TTS-EEEEESSSS--TTTT CS
        Thi4 20 vvivGaGssGLtaayylakk.pdlkvailersvspGGGaw 58
                +v +GaG+sG+  a+ + ++  +++  + e++  +GG +w
  KKY20773.1 23 IVTIGAGASGINVARNVKEHmKNVEFQMYEKNSEIGG-TW 61
                899***************9989999999999977765.56 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.15
                 HTEEEEEEE--SHHHHHH CS
        Thi4  15 yaesDvvivGaGssGLta 32 
                 + +  v+++G GssG+  
  KKY20773.1 152 LYDKSVAVIGCGSSGIQL 169
                 566789*********865 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.14
                 S.-B-EEEEEEEEEE--GSSSTT CS
        Thi4 150 scvDPlvirakvvvdatGhdgei 172
                    D ++i+  v++ atG d ++
  KKY20773.1 316 VLSDGQIINVDVIICATGFDLSF 338
                 345999************99776 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1   0.00077       1.3       2      36 ..      22      58 ..      21      60 .. 0.82
   2 ?    4.3   0.0    0.0085        14       2      70 ..     156     230 ..     155     242 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00077
                 SEEEE--SHHHHHHHHHHHHTT--E..EEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrV..lllekakklg 36
                 +++ iG+Ga+G+  A +++++ k+V   ++ek++++g
   KKY20773.1 22 RIVTIGAGASGINVARNVKEHMKNVefQMYEKNSEIG 58
                 5899**************8888877225788888877 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0085
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-S.....SSSS-HHHHHCGGGT-EEEE.TT-SGGGEEES...STTTT CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllek.....akklgrKilisGgGrcNvTn.lseepeellsrypenpkfl 70 
                  +v+viG G +G+   ++++   k+ + + +     +  +g+K +  Gg   N+T  +++e+ee  ++y e +k +
   KKY20773.1 156 SVAVIGCGSSGIQLVANIQPMVKHLTTFIRqptwvTAGFGSKYAAPGGTNFNFTEeQKREFEENPKSYLEYRKAV 230
                  699********87666665444444333330122245799**************933444455444454444444 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0085        14       6      39 ..      22      55 ..      19     115 .. 0.86
   2 ?    6.7   0.0     0.003       4.8       2      23 ..     152     173 ..     151     182 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0085
                -EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-H CS
        IlvN  6 kiaviGyGsqGhaqalnlrdsgldvvvglregsk 39
                +i+ iG G+ G + a+n+++   +v   ++e+++
  KKY20773.1 22 RIVTIGAGASGINVARNVKEHMKNVEFQMYEKNS 55
                6899******************999998887764 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.003
                 HHTS-EEEES-SHHHHHHHHHH CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnl 23 
                 l +k +aviG+Gs G     n+
  KKY20773.1 152 LYDKSVAVIGCGSSGIQLVANI 173
                 679***********98766665 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0016       2.5       1      25 [.      22      46 ..      22      90 .. 0.86
   2 ?    3.4   0.0     0.069   1.1e+02       1      34 [.     156     189 ..     156     200 .. 0.85
   3 ?   -2.8   0.0         6   9.8e+03      52      68 ..     296     312 ..     288     316 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0016
                EEEEECSSHHHHHHHHHHHHTTSEE CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkV 25
                ++v +G+G +g+ +A + +e+ k+V
  KKY20773.1 22 RIVTIGAGASGINVARNVKEHMKNV 46
                79****************9998877 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.069
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkl 34 
                 +v+v+G G +g+ l ++++ + k+ t + r+++ 
  KKY20773.1 156 SVAVIGCGSSGIQLVANIQPMVKHLTTFIRQPTW 189
                 699***************9999999998888765 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 6
                 HTTEEEECSEEEEEEEE CS
   Pyr_redox  52 kngievllntkveeieg 68 
                 + ++ v+++t++   + 
  KKY20773.1 296 APNVSVITGTEISHATS 312
                 34899999999987765 PP

>> Malic_M  Malic enzyme, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0011       1.9      26      53 ..      21      48 ..      10      74 .. 0.85
   2 ?    1.2   0.0      0.11   1.8e+02      20      46 ..     149     175 ..     140     182 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0011
                --EEEEC-SHHHHHHHHHHHHHHHTTTS CS
     Malic_M 26 qkivvlGaGsagiGiaeqivealvkeGl 53
                 +iv +GaG++gi +a ++ e++++   
  KKY20773.1 21 VRIVTIGAGASGINVARNVKEHMKNVEF 48
                589******************9987655 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.11
                 -S-GGG--EEEEC-SHHHHHHHHHHHH CS
     Malic_M  20 gkklseqkivvlGaGsagiGiaeqive 46 
                 g++l ++ + v+G Gs+gi ++ +i  
  KKY20773.1 149 GTELYDKSVAVIGCGSSGIQLVANIQP 175
                 67899**************98888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.66u 0.36s 00:00:01.02 Elapsed: 00:00:00.50
# Mc/sec: 3114.66
//
Query:       KKY20774.1  [L=372]
Description: hypothetical protein UCRPC4_g04046 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-63  212.2   0.0    9.1e-63  211.9   0.0    1.1  1  DUF3445   Protein of unknown function (DUF3445)


Domain annotation for each model (and alignments):
>> DUF3445  Protein of unknown function (DUF3445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.9   0.0   5.1e-67   9.1e-63       1     225 []      88     330 ..      88     330 .. 0.91

  Alignments for each domain:
  == domain 1  score: 211.9 bits;  conditional E-value: 5.1e-67
     DUF3445   1 glrkldpsewieldktYkerieerrrlleehgekvlavlpeaeaavkElleelve.yLparYPqlFel.skkkt.lenkvtgetfel.......eplev 89 
                 gl++++++ + ++d++Y+er+ er+++le ++  +l++l  a +   El+++l++ yLp+rYP++F+l sk +  l+n v +e + l       + l+ 
  KKY20774.1  88 GLQNTTVNTITRMDQQYLERMVEREKILEMYP-GALGCLDSAIDMTNELYSYLMTtYLPQRYPTMFKLcSK-SStLHNLVKNEHLCLvppadpiQSLRD 184
                 68999*************************98.7788******************************9643.444********88669999887799** PP

     DUF3445  90 larlvqeDllillen.dge.yyleAgvvcfpagwdlreklgkpLseiHepVpgykekleksmerffarlepgkpvkRvnwsiqtddelfwase...... 180
                 +a +v+eD+l+ll++ dg+ y l+++v c+p+g+d+++klg++L++ H+pVp+yk+kle+sm+r+farl+p ++v+Rvnw + t++ l + +       
  KKY20774.1 185 IALTVDEDFLMLLPSpDGDgYSLQSFVWCYPVGFDPQDKLGMKLRDAHGPVPSYKDKLEASMDRYFARLQPPRVVQRVNWAVATNSALCE-RGeyhlya 282
                 **************954436****************************************************************999996.44578887 PP

     DUF3445 181 ..ee.eeeeldieelflRvErQtLrRLpksgaivFtirtyltpleelk 225
                   +  +++++d++++++R+E+QtL+ Lpksg+ + +++ yl+p++e+k
  KKY20774.1 283 ddQVsTQSDVDLNDTWVRCELQTLFALPKSGGRILSVHLYLYPIQEIK 330
                 64223344588***********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.53
# Mc/sec: 2093.52
//
Query:       KKY20775.1  [L=465]
Description: putative glutamate-1-semialdehydeaminomutase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-47  161.3   0.1    1.7e-46  158.7   0.1    1.9  1  Aminotran_3      Aminotransferase class-III
  ------ inclusion threshold ------
       0.01   15.2   0.2       0.02   14.2   0.2    1.4  1  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.7   0.1   1.9e-50   1.7e-46       8     378 ..      77     430 ..      73     452 .. 0.86

  Alignments for each domain:
  == domain 1  score: 158.7 bits;  conditional E-value: 1.9e-50
                  -SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHH CS
  Aminotran_3   8 nlllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlK 105
                  +++l ++ ++G y++d+d++++lD+v+   + + Gh+hP + + + +  +++ ++     t  + +k a  + + ++   ++v + nsG+eA+  Al 
   KKY20775.1  77 PFPLSMKCGKGPYVYDEDDHKMLDFVGELTAGIYGHNHPVLRETIISTFDNVGMTL--GSTIVQEQKHAALMCERFGL--ERVRFTNSGTEANLHALN 170
                  456888999******************************************97777..66777777888888998888..****************** PP

                  HHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SCET CS
  Aminotran_3 106 larkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEpiqg 203
                   ar+       t   k++ f+ga+HG +   ls ++  k  ++++     + v +ky+d              ++ +++ + + ++++aAv+vE +qg
   KKY20775.1 171 GARQ------FTGERKVVVFTGAYHGAV---LSFGDG-KVASNNVD--HDDWVIAKYND--------------IKSAQDTI-EGTPNLAAVLVEGMQG 241
                  ****......9***************75...788887.33444443..46788899998..............22234444.5799************ PP

                  TTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTS.....B--TTTT-HH CS
  Aminotran_3 204 egGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgs.....hgsTfgGnpl 296
                  +gG ++a++ef+++++e ++k ++++i DEv+t   + G l    ++g++pD++ ++K l+gG+ + a+ ++a++m++  p +     h++Tf  n++
   KKY20775.1 242 AGGCIPATKEFMQAVQESARKVGAVFILDEVMTSRVAPGGLQ--SQLGLQPDITSFGKYLGGGFAFGAFGGRADIMSVYDPRGarslaHSGTFNNNTM 337
                  ***********************************9999553..345********************************99999************** PP

                  HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC.............HHHHHHHHHCTEE-EEET CS
  Aminotran_3 297 acavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke.............keilkkakekGvlilsaG 378
                  a+    a +  i + ++    ++ g+ l+e+L+++ k      +  g+G+++a+ + ++  ++                +  ++ e+G +i   G
   KKY20775.1 338 AMYTGYAGFSKIYTPEVNVAFNKQGDDLREKLSSVCKGT--KCSFTGRGAILAVHFSKSGLENIrsvddvqelwdlkDLFWFEMMEEGFWITRRG 430
                  ***********************************9876..56899********99998875546666666666664334556666666666555 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   2.2e-06      0.02      39     167 ..     144     270 ..     133     275 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.2e-06
                      HHHHHHTT-SEEEEES-HHHHHHHHH...HHH--TTEEEEEETT-HHHHSSTTHHHHC.C--EEEEE-EBTTTBE-HHHHHHHS--S-TTS-EE CS
  Beta_elim_lyase  39 davaelfgkeaalfvpqGtaAnsill...killqrgeevivtepahihfdetgaiael.agvklrdlknkeaGkmdlekleaaikevgaheeki 128
                      + ++e fg e + f+ +Gt An  +l   + ++   + v++t   h+     g  ++  + v   d  +++  + d+++ ++ i+      ++ 
       KKY20775.1 144 ALMCERFGLERVRFTNSGTEANLHALngaRQFTGERKVVVFTGAYHGAVLSFGDGKVAsNNVDHDDWVIAK--YNDIKSAQDTIEG--T--PNL 231
                      56899********************9887667766677888888888888887777776888888888888..8888888888888..6..9** PP

                      EEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase 129 klisltvTnntagGqvvsleelrevaaiakkygiplhlD 167
                      ++++++    + g  + + e +++v++ a+k g  ++lD
       KKY20775.1 232 AAVLVEGMQGAGGCIPATKEFMQAVQESARKVGAVFILD 270
                      *******99987778899999***************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.50
# Mc/sec: 2784.56
//
Query:       KKY20776.1  [L=554]
Description: putative aat family amino acid transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-75  254.2  40.0    2.4e-75  254.0  40.0    1.0  1  AA_permease    Amino acid permease
    3.3e-23   82.2  43.7    4.1e-23   81.9  43.7    1.1  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.0  40.0   2.7e-79   2.4e-75       1     475 [.      59     514 ..      59     517 .. 0.91

  Alignments for each domain:
  == domain 1  score: 254.0 bits;  conditional E-value: 2.7e-79
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  hv++ alg  iG g+++++g++l+ ++  g++++y l++++ +++m+ l+e  +++p sg+f    +rf++p+l+f+ G+  +f  +tv+a+e  ++ 
   KKY20776.1  59 HVQMVALGANIGSGIYISSGKALRYGSAPGMMIGYGLICTMAMFMMNLLSEAQCLFPTSGSFIDHTARFVDPALAFALGFAEWFGALTVVAAEASVVP 156
                  9************************************************************************************************* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfr.flgdngsifknnlppgfakeee 195
                  i+i++w  +t++p a ++ ++ lv++l+ +++ ++v++e+ef++  +k+    +++ v  i+ +g +   +   r + ++++s     lp+g      
   KKY20776.1 157 IVISYW--TTSVP-AAAWYTIYLVIVLGQHVLPNRVFAEFEFFTGAMKVTVTFIVLFVMLIICCGYGSGID---RgYNYEHLS----ALPNG------ 238
                  ******..*****.*****************************9999998877777777677777776666...304444455....89***...... PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplin 293
                    fk+++svf  ++ a  G e+++++agE++ P+  +P+a ++ +iri+++Y  +++ i++lvp++d+ ll +s++a+spfvi++k+ g++vl++++n
   KKY20776.1 239 --FKGIASVFLLAAWATGGQEIIGVTAGEARFPRWELPRACKNLFIRIMLIYMSACVYITVLVPYTDPLLLGSSNVASSPFVIAMKKVGINVLPDIVN 334
                  ..************************************************************************************************ PP

  AA_permease 294 aviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfR 391
                  +v+l+ + ++++ s+++a+R+ +++a+ g++P++++kv+  g+P+ + + ++iis ++  ++ ++ + +++f+++++isa  +++ wl i ++ + + 
   KKY20776.1 335 VVLLIGLAGIGSESMFIATRIQTAMARMGMFPAIFGKVDSLGRPIYSAATCAIISTVMTYINCSAGG-AVAFTWFSSISATTTFFAWLTIPITNIMMH 431
                  *******************************************************999866666666.7***************************** PP

  AA_permease 392 kalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkrp 475
                  +alk+q   + +l+   ++  + +    +++++ + +la ++y+ +  + ++ +a++f++  l++++fl ++v++kl++++k++
   KKY20776.1 432 RALKAQDDPALKLKHAFRVRWY-PFAPAFLFCTTAFTLACTIYVSASPISDSPSATVFFQNMLCMPVFLFCWVAWKLWFRTKIQ 514
                  ********77555544444433.444444445555556666666666777778****************************987 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9  43.7   4.6e-27   4.1e-23       3     416 ..      57     485 ..      55     503 .. 0.77

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 4.6e-27
  AA_permease_2   3 llsafalvigsvigsgifvkn....laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlas 94 
                    ++ + ++++g+ igsgi++++    +++s+    i +++i ++++ +++  ++ E  +++p+sg  +  t+++  + +af  +++ wf+++ v+a+
     KKY20776.1  57 TRHVQMVALGANIGSGIYISSgkalRYGSAPGMMIGYGLICTMAM-FMMN-LLSEAQCLFPTSGSFIDHTARFVDPALAFALGFAEWFGALTVVAA 150
                    566778999***********9987766665556888888888886.5555.45677777********************************99987 PP

  AA_permease_2  95 ilsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl....stetdtffpng 186
                     +sv+   + +++  ++     ++y i+ +i+++ +++  r     a + +++g +k++++  +++++++++++ g+ s +      e+ + +png
     KKY20776.1 151 EASVVPIVISYWT-TSVPA--AAWYTIYLVIVLGQHVLPNRVF---AEFEFFTGAMKVTVT--FIVLFVMLIICCGYGSGIdrgyNYEHLSALPNG 238
                    6666655555543.34433..3678888888888888855555...666666666666433..33333333333333333333443456689**** PP

  AA_permease_2 187 wpgvllgllivlwsfdGfesaanvseevkk.k.dvpkaifigllivlvlyllvniaflgvvpddei.....anlsnlgsvaalffeavggkvvaii 275
                     +g+++++l ++w+++G e + + + e++  +  +p+a+ + ++ ++++y+   + ++  vp         +n++   s++ + +++vg  v+  i
     KKY20776.1 239 FKGIASVFLLAAWATGGQEIIGVTAGEARFpRwELPRACKNLFIRIMLIYMSACVYITVLVPYTDPlllgsSNVA--SSPFVIAMKKVGINVLPDI 332
                    ***************************7755559*******************9999999999665365333333..347**************** PP

  AA_permease_2 276 vvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas.saaynfllsvsslgliisylll.iiga 369
                    v++++ ++l+g++   +++++r+  a+ar g++P  f kv+  g+pi++  + ai+s++++ + + a  + a+++ +s+s+   ++ +l + i+  
     KKY20776.1 333 VNVVLLIGLAGIGSESMFIATRIQTAMARMGMFPAIFGKVDSLGRPIYSAATCAIISTVMTYINCSAGgAVAFTWFSSISATTTFFAWLTIpITNI 428
                    ***********************************************************98776655569*************9999988846666 PP

  AA_permease_2 370 lilrkkrphl.kr..........pgkilvaiigalfllfllvalffppkgpatqssli 416
                    +++r  + +  +           ++ +   ++ ++++ f+l+ ++++++ p   s+++
     KKY20776.1 429 MMHRALKAQDdPAlklkhafrvrWY-PFAPAFLFCTTAFTLACTIYVSASPISDSPSA 485
                    6777666655422545556555333.45666779999999999999999887666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.65
# Mc/sec: 2574.26
//
Query:       KKY20777.1  [L=945]
Description: putative l-amino acid oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-52  178.6   1.0      3e-52  178.1   0.1    1.6  2  TauD           Taurine catabolism dioxygenase TauD, TfdA fami
    2.6e-41  142.4   0.0    3.4e-41  142.0   0.0    1.2  1  Amino_oxidase  Flavin containing amine oxidoreductase
    3.2e-10   40.1   0.0    1.4e-09   38.1   0.0    2.1  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00015   21.1   0.2    0.00032   20.1   0.0    1.6  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
     0.0022   17.3   0.7     0.0035   16.6   0.7    1.2  1  FAD_binding_3  FAD binding domain
     0.0038   16.0   0.1      0.028   13.1   0.1    2.1  2  HI0933_like    HI0933-like protein
  ------ inclusion threshold ------
       0.14   11.2   0.1       0.25   10.4   0.1    1.4  1  FAD_binding_2  FAD binding domain
       0.29   11.7   1.1       0.67   10.6   0.1    2.0  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.4   3.2e+03      68     117 ..      52     108 ..       6     110 .. 0.59
   2 !  178.1   0.1   1.3e-55     3e-52       2     264 ..     112     380 ..     111     381 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.4
        TauD  68 rgtntkygevld...vssvyesadianlayttllw....HtDlsylesppgiqlLhc 117
                 ++t+      +d   ++ +y++  ++n+ + ++++    H D  ++ +p +  l+ +
  KKY20777.1  52 GPTEIPAKTAHDytvSDYRYKHFLPHNTLTSESPLtpydHVDVGFRAEPEKKALFSA 108
                 333333333333332555666777777666666644456999999999999888876 PP

  == domain 2  score: 178.1 bits;  conditional E-value: 1.3e-55
        TauD   2 vkpltpkfgae..gvdlsdleslddelkeelrellaeygvvvfrgfpl...speqqlefarrfGplygtpgrgtntkygevldvssvyesadianlayt 95 
                  k+ltp +g+e  gv+ls+   l++++k el   +ae+g+v+fr +++     e ++ f ++fG l+ +  + ++++++e+ +   vy ++d+ n+ ++
  KKY20777.1 112 RKDLTPSIGTEvtGVQLSQ---LSNQQKNELALYVAERGLVIFRKQDFvdnGIEWLKHFGSYFGRLHVHQWGFHPKDHPELTI---VYRDSDKGNYFDN 204
                 589********88888888...88888**********************9999******************************...4556666665555 PP

        TauD  96 tll.......wHtDlsylesppgiqlLhcleapatGGetpfvDgraaynaLpeelpellegltavrvyyhyrggglrteqelpavdkhprtghpvvrth 187
                           wH+D++y+ +ppg+++L +l  p+ GG+t++ +  aay++L++ ++ +legl av++  ++      +++++ a++    t hpvvr+h
  KKY20777.1 205 QTDgdlntiaWHSDMTYEVNPPGTTFLSSLSGPECGGDTLYLNAMAAYDRLSPIMKNFLEGLEAVHSGIRQSL---LSMKTNLARRPAIDTVHPVVRKH 300
                 5556778999*********************************************************999888...99********************* PP

        TauD 188 pvltgrkallvnppfatrieglgtpeskelldaleelledp.eftyrfqwqeGdlvifdNrrvlHgrt.af..degeeRhl 264
                 pv tgrkal vn+ ++t+i+g+++pes+++l++l+++l +  +f+ r++w+eG +v  dNr v+H+ t ++    g++Rhl
  KKY20777.1 301 PV-TGRKALWVNKEYTTKIVGMKKPESDAVLNFLFDHLHKGlDFQTRVKWEEGTVVAYDNRMVQHSITlDYplGNGQKRHL 380
                 *8.*************************************88***************************995556688987 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.0   0.0   1.5e-44   3.4e-41       2     452 .]     437     913 ..     436     913 .. 0.82

  Alignments for each domain:
  == domain 1  score: 142.0 bits;  conditional E-value: 1.5e-44
                    HHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEET.........T.....EEEESS--EEET..........TTHHHHHHHHHTTCCCCEE..EES CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvlEardrvGGRirtvrsd.........G.....ylielGamwftg..........agnpllellkelgledsls..lpd 71 
                    aGL  A  L+s G d  +lE ++r+GGRi+t+r++         G     +++++Gam+f+g          +++++  ++++ ++ed+    ++ 
     KKY20777.1 437 AGLYSAILLQSLGIDYEILEMSNRTGGRIFTYRFNetawdlskpGepdyyNYYDVGAMRFPGlswmdrvigsQNTSVVSYVND-NVEDDSDkiTMI 531
                    9**********************************999988777488899*********************99999*******.888766544333 PP

                    CCGCEEEEETTEECCTTEECHHHHHHHHHHHHHHHH.........CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHH.HHHHHHHHHH CS
  Amino_oxidase  72 pgapkrvlskggrefpgdlspvpaewealleqgals.........aellsleeklrlgleallqktldeldldskslaesleelg.rrepgdvevw 157
                      + ++  +++ r ++g+l +++a + +  ++   +         + +  +   ++   +al q + + ++l + ++++s +e   +++ ++ +  
     KKY20777.1 532 --PYYFQANNTYRLYNGELVSINAIPSEQTFDI--PndnstfsvlSPGAVFSNAVKSLTDALSQDFDTGFNLLMQYDDISAREYLlQQGYTP-AEI 622
                    ..3366666677777999999977777777722..22344544445666667777777777779999999**99999999777550555555.778 PP

                    HHHHHHHHHHHHHHHHHCHTSTTTTCBHHHHTCCCCHHHHHTSCCCEE.TTHTHHHHHHHHHTTTTEEEETSEEEEEEEE.ETTCEEEEETTSTEE CS
  Amino_oxidase 158 drliepelfaklefasglfagdpselsaklalpllwelegfggslllp.rgGlsqlpealaeelrgldirlntrVkeikr.egdgvtvtledgevv 251
                    d++ +        +  ++  +  + +s++ a  ++w ++  + + + + +gG++++++ +++  ++ ++ ln+rV+ +k  + +g+tv + + e++
     KKY20777.1 623 DYIET--------ITDATQHF--DVYSLSQAVLEEWIFTASSLNSWQAvEGGMDRMINGMEK-VLNQTVELNKRVTALKPsSTGGITVVINNNEKR 707
                    88888........77777766..77*********************9999************.*****************66666*********** PP

                    EESEEEE-S-HHHHHSSEEES.CCSHHHHHHHHHSEEEEEEEEEEEESSGGSGCSTSECECECCCEEETTTEEEEECCECCCSTTTEEE...EEEE CS
  Amino_oxidase 252 eaDaVvvTvplgvlkailfsP.plpdekaeairnlgfgsvnkvilefdrkfwednalgqgvlvseltttlgeafissdfpsrappgkgl...vllv 343
                    ++ +V+ Tvplg+++ +  +   l  +   air+l++ ++ k+ ++f+ ++w+++        +++ ++l+ + + ++  s+ ++++     ++ +
     KKY20777.1 708 NYSHVINTVPLGAMAVMDMTSlDLDYQQKLAIRKLWYDPAGKIGMSFKSRWWQPQV-----IGGQSFSDLPIRRCVYP--SYGVNTTDAagaMIAS 796
                    ***************555555688779999************************77.....89999999999999955..44444444444499** PP

                    EECHHHHHHH.....TTS-HHHHHHHHHHHHHHHHT....GTSSTCSEEEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCHHCSTTEEE.SGGGC CS
  Amino_oxidase 344 yvggdaanel.....eslsdeelvqavlrdLrklfg....eevpepkatlvtrWhtdplargsysyvsvgpghedydplakpegdprlffAGehts 430
                    y++  +  +l     +s   e +++ vl++L+ + +    + +++ ++t+  +W + + + g+++ + + + ++ +  l++p++ +rl+fAGe+ s
     KKY20777.1 797 YTWSQDSSRLgafyhTSEAQEHILDVVLSNLAAMNNvtkeFLEDQLVDTHFWDWYAHEEYVGAFAIFGPDQFSTLMPSLMQPAQNGRLHFAGEALS 892
                    ***7777777444434447888888888888888778866666777778888888877778999999999999999999999************** PP

                    TTTTTS.HHHHHHHHHHHHHHHH CS
  Amino_oxidase 431 reypgt.vegAilSGlraAaril 452
                    +++  + + gA++S+ r++ +il
     KKY20777.1 893 SGH--AwIIGAVNSAYRSVSEIL 913
                    555..55***********99986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   6.1e-13   1.4e-09       1      45 [.     431     475 ..     431     505 .. 0.81
   2 ?   -3.2   0.0       4.6     1e+04      29      55 ..     804     830 ..     794     839 .. 0.69

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 6.1e-13
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETTCEE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpgvrv 45 
                    IvG+G++Gl+ A lL+  g+d ++le+++r+GGr+ +y++++ + 
     KKY20777.1 431 IVGGGAAGLYSAILLQSLGIDYEILEMSNRTGGRIFTYRFNETAW 475
                    9**************************************965333 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.6
                    SSSSGGG-EECETTCEECTS---EEET CS
  NAD_binding_8  29 drlGGraasyevpgvrvdygahifhgs 55 
                    +rlG   ++ e +++++d+  + ++ +
     KKY20777.1 804 SRLGAFYHTSEAQEHILDVVLSNLAAM 830
                    567777777777778888777777775 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.4e-07   0.00032       2      50 ..     431     479 ..     430     487 .. 0.87
   2 ?   -4.1   0.1       3.3   7.3e+03     166     177 ..     895     906 ..     889     914 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.4e-07
  Pyr_redox_3   2 IiGaGPaGlaaaielkkagledylilEkg.nignsiyrypkemtfispsf 50 
                  I+G+G+aGl +ai l+ +g+ dy ilE   + g  i  y+ + t  + s+
   KKY20777.1 431 IVGGGAAGLYSAILLQSLGI-DYEILEMSnRTGGRIFTYRFNETAWDLSK 479
                  9*******************.8*****99788999999988887766655 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 3.3
  Pyr_redox_3 166 kvvViGgknSav 177
                  +  +iG+ nSa 
   KKY20777.1 895 HAWIIGAVNSAY 906
                  6789******96 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.7   1.6e-06    0.0035       3      34 ..     428     459 ..     426     463 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.6e-06
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrs 34 
                    +V IVG+G aGl +a lL++ G++  ++e  +
     KKY20777.1 428 TVGIVGGGAAGLYSAILLQSLGIDYEILEMSN 459
                    799*********************99999766 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   1.2e-05     0.028       3      39 ..     429     465 ..     427     467 .. 0.91
   2 ?   -0.2   0.0      0.14   3.1e+02     344     385 ..     850     891 ..     814     897 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.2e-05
                  EEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHH CS
  HI0933_like   3 viviGgGaAGlmaAisaakrgkrVlllekakklgrKi 39 
                  v ++GgGaAGl+ Ai +++ g +  +le  +++g +i
   KKY20777.1 429 VGIVGGGAAGLYSAILLQSLGIDYEILEMSNRTGGRI 465
                  679**************************99999776 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.14
                  -SEE--TTT-SEEEEEE-GGGB-TTT-BBTTSTTEEE-GGGB CS
  HI0933_like 344 vngteglrkaevTaGGVdlkevssktmeskkvpgLffaGEvl 385
                     +e++  a+   G  +++ + ++ m+  +   L+faGE l
   KKY20777.1 850 WYAHEEYVGAFAIFGPDQFSTLMPSLMQPAQNGRLHFAGEAL 891
                  55677777888888888899999*****************88 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00011      0.25       4      38 ..     431     465 ..     428     468 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00011
                    EE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGG CS
  FAD_binding_2   4 ViGsGlAGLaAAleaaeaGlkvavvekeqefggat 38 
                    ++G+G+AGL +A+ ++  G +  ++e  +++gg +
     KKY20777.1 431 IVGGGAAGLYSAILLQSLGIDYEILEMSNRTGGRI 465
                    9*******************999999999998865 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1    0.0003      0.67       2      35 ..     429     462 ..     428     473 .. 0.89
   2 ?   -1.9   0.1       2.4   5.3e+03      56      77 ..     679     700 ..     667     704 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0003
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35 
                 v +vGgG  gl  A  l+ lg +  ++e+s++  
  KKY20777.1 429 VGIVGGGAAGLYSAILLQSLGIDYEILEMSNRTG 462
                 779***************************9977 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.4
                 EEECSEEEEEEEEETTS.EEEEE CS
   Pyr_redox  56 evllntkveeiegsedg.vesvk 77 
                 +v ln++v++++ s+ g ++ v+
  KKY20777.1 679 TVELNKRVTALKPSSTGgIT-VV 700
                 67899999999988888665.54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (945 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.52
# Mc/sec: 5442.81
//
Query:       KKY20778.1  [L=827]
Description: putative allantoate permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-26   92.8  29.9    2.9e-26   92.2  29.9    1.2  1  MFS_1     Major Facilitator Superfamily
    9.1e-07   28.8   0.0    1.5e-06   28.1   0.0    1.3  1  DAO       FAD dependent oxidoreductase
     0.0096   15.3  11.8      0.016   14.5   5.0    2.1  2  MFS_4     Uncharacterised MFS-type transporter YbfB


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2  29.9   4.9e-30   2.9e-26      15     352 ..      77     427 ..      63     428 .. 0.83

  Alignments for each domain:
  == domain 1  score: 92.2 bits;  conditional E-value: 4.9e-30
       MFS_1  15 lgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliad 112
                 l++a+   l +d ++ ++++++l ++ +lga+v++lp ++l  +f + + + ++++ ++  +ll+++ +s++  l+v+r+l+G ++++++p++  lia 
  KKY20778.1  77 LSTAAIYGLVDDNNLYGQQYSWLGSILSLGALVGMLPSSALLHKFNSAKyLSFCSMGWSTMALLMPA-CSNWAGLMVVRFLMGCFEAIIVPGISLLIAG 174
                 3344444999***********************************9999555666666666655555.48877************************** PP

       MFS_1 113 wfpkeergraigllsagfslGa.ilgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrkspkeee.....kgtgpaplvp.... 198
                 w+ k+e++  ++l+ a++s ++  +   + g + +s+    W++++++++ +s+++  +++++lp++p +    s++e+        +      +    
  KKY20778.1 175 WYQKSEQPPRNALVFAAASSAVnGFLSWVVGHIPDSAPlsiWQYLYLLVGSISMIWSGFVFIFLPATPMDALFLSKEEKVqwvrrLAP------Nktgi 267
                 ****************999999999999999999888899****************77777999999999999998888666655222......23444 PP

       MFS_1 199 .........awkallkdpvlwillialllfffgfsg.....lltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllalll 283
                          a++al  ++     +i+++++  ++++     +++     + + lg++  ++++ll++ +++++ i+a++++ +  +++ rr l  ++++
  KKY20778.1 268 vnktwkwdqAIEALIDPK----TWIIFFFNI-AINIpngglITFNAI--IIKNLGFT-SVQSSLLSMPTGIISTIAAFIFSTIGAKWNDRRCLGYTYFG 358
                 447777788888999999....999999995.888877763333333..49******.7**************************************** PP

       MFS_1 284 lllaalglallavtssavllllvlvl.iGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                   ++ ++la ++++ ++   l + +l iG ++g   +  +++ ++ ap+   g ++ l++ + ++g +++
  KKY20778.1 359 PYVVGISLAQANTAGHTKKNLSFAILyIGYAVGN-LIGPQTFRANQAPAYTGGVVAMLVSYCVCIGLIIA 427
                 **************66666554333336666665.5666777777788888999999999******9987 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   2.4e-10   1.5e-06     130     352 .]     506     771 ..     441     771 .. 0.70

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 2.4e-10
                 TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEES.................ECEEEEEEEETCEEEEEEECTEEE.E.....EEEEEEE--GGGHH CS
         DAO 130 gllgalfypdtgqvdpakltaalaraaealGveileg.................tevtgleeedgkvwgverttpgen.d.....aadavVnaaGawsd 205
                 +++g +++  +g + + +++ a ++++ +lGv++ +g                 +++ g+++         +   g++ +       +  +++ Ga+  
  KKY20778.1 506 EWKG-YLSSYGGYAMASQAMLAAYEKCVNLGVKFEFGknghitelenlldasesRNIIGIKAI--------N---GTVhRhpaegP-HVTILSLGAHL- 590
                 5666.445555999999********************88888555444444333333333332........2...33311222213.569*****994. PP

                 HHHTTCTTTSEEEE..EEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEE..............TTSEEEEEESSE.................. CS
         DAO 206 llgllkeldlpisp..vrgqvlvlkplseklvspaailpvpetdddgrgvyvtpr..............kdgrvlvGgtad.................. 270
                  +   ++l  pi +  + +  + ++++++ + +++    +p+ +  + g+ + p               +  ++ +G ++                   
  KKY20778.1 591 -A---RIL--PIAGgqITAKAWSVAHIELDEAEAEEFKEMPVMNFTELGFWMEPLwvssdpsspekvtlP-EEHSIGLEGKyllklaahgagwtnfegk 682
                 .4...444..442222555556666666655555555556657777888888884477778877777742.3455555554777777778899988887 PP

                 ..EETTCSS.TSCSHHHHHHHHHHHHHHSGG.G..CGEEEEEEEEEE.ETTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHHHH CS
         DAO 271 ..eesgddd.pevdeedidellealrklfPq.l..gdvlrkwaGlrp.lpdglpligetpgvkglylatGhsghGltlapatGkllael 352
                     + +++ +e++ +d ++l+e ++  +P  l  ++++rk  +  + + d   +++ +pg+ +l+la   sgh++++ p++G+++ el
  KKY20778.1 683 niSIAPPHQiLEIPLDDERKLRELVQVSLPPnLhsRSFVRKSICWCAdTSDSEYVVDFVPGYVDLVLAGADSGHAFKMFPLAGEWTKEL 771
                 7633333336899999*************774444556664444444357********99999**********************9875 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   5.0   2.7e-06     0.016      18     171 ..      84     240 ..      77     263 .. 0.74
   2 !    4.9   0.6    0.0023        14     289     357 ..     352     426 ..     333     430 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.7e-06
       MFS_4  18 allaegqlslsqagllaaaNylGYLvGallaafalsagaeRlr..llagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaar 114
                  l+ + +l   q ++l+++  lG LvG l   +al ++ +  +    +++  ++++ l m + ++ a ++++Rfl G   A++   +s l+    ++++
  KKY20778.1  84 GLVDDNNLYGQQYSWLGSILSLGALVGMLPS-SALLHKFNSAKylSFCSMGWSTMA-LLMPACSNWAGLMVVRFLMGCFEAIIVPGISLLIAGWYQKSE 180
                 67788889999*****************965.444444333332245555555544.4588999********************99999**9999999* PP

       MFS_4 115 rervgallfaGvGlGiavsgllvllllqlglsassl.....Wlalavlsavllllvalllpr 171
                 ++   al+fa      av g l +++ +   sa  +     +l+++ +s++    v++ lp+
  KKY20778.1 181 QPPRNALVFAAA--SSAVNGFLSWVVGHIPDSAPLSiwqylYLLVGSISMIWSGFVFIFLPA 240
                 *999*****975..457888888887777665543332333456777788877778887773 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0023
       MFS_4 289 lGltflaitalvlqlarelappatrrl..lglmTasfgigQilGplla..sllaeatgslalall..vaaaalvl 357
                 lG t+++   +++ la+ + + +t+++  ++++ + +++g ++Gp  +  +   ++tg++ + l+  +    l++
  KKY20778.1 352 LGYTYFGPYVVGISLAQANTAGHTKKNlsFAILYIGYAVGNLIGPQTFraNQAPAYTGGVVAMLVsyCVCIGLII 426
                 788888888888999988888777555125677899*********876114555678887665543344455554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (827 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.51
# Mc/sec: 4871.98
//
Query:       KKY20779.1  [L=1314]
Description: putative 5-oxoprolinase (atp-hydrolysing) [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.2e-201  668.3   0.5   6.2e-201  668.3   0.5    1.5  2  Hydantoinase_B  Hydantoinase B/oxoprolinase
   3.7e-100  334.9   0.6    1.5e-99  332.9   0.0    2.4  3  Hydantoinase_A  Hydantoinase/oxoprolinase
    2.8e-56  190.1   0.4    1.1e-54  184.8   0.0    2.5  2  Hydant_A_N      Hydantoinase/oxoprolinase N-terminal region
  ------ inclusion threshold ------
      0.028   14.4   0.0        0.1   12.6   0.0    1.8  2  eRF1_1          eRF1 domain 1


Domain annotation for each model (and alignments):
>> Hydantoinase_B  Hydantoinase B/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.2      0.67     3e+03     209     262 ..     559     614 ..     552     621 .. 0.72
   2 !  668.3   0.5  1.4e-204  6.2e-201       2     515 ..     749    1280 ..     748    1281 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.67
  Hydantoinase_B 209 mdeildnaeravraal..aelpdgtyeaedylddg...ipikvtvtidgdeatvDftgt 262
                     +  ++++ e++v+aal  + + + ++ +e+yl+     ++ ++ +t + d  ++Df++t
      KKY20779.1 559 LTTVFEDLETQVEAALleQGIDKTSIYFEYYLNMRyqgTETAMMIT-ESD--KFDFQET 614
                     5667788888888888877788888889998854222277777777.555..7999887 PP

  == domain 2  score: 668.3 bits;  conditional E-value: 1.4e-204
  Hydantoinase_B    2 pitlevfrnrlmsiaeemgrtlqrtaiSpnikerlDfscalfdadgelvaqaphipvhlgsmseavkavlekfegelkpGDvlltNdPyaggt 94  
                      p tl+vf +r+msiae+mgr+lq+t++S nikerlDfsca+f ad +lva+aph+pvhlgsms+av+ ++e ++g+l+pGDvl++N+P aggt
      KKY20779.1  749 PATLSVFGHRFMSIAEQMGRALQNTSVSLNIKERLDFSCAIFGADAGLVANAPHVPVHLGSMSYAVQFQHELLKGKLSPGDVLVSNHPEAGGT 841 
                      89******************************************************************************************* PP

  Hydantoinase_B   95 HlpDitvitPvfhege..lvffvasraHhaDiGGitpGsmppdateifeEGlrippvklveege.leedvlelllanv.........Rtpedn 175 
                      HlpDitvitPvf e    +vf+vasr+Hh+DiGG   +smpp++te+++EG++i+++kl+++g+ +e++++++ll+ +         R ++dn
      KKY20779.1  842 HLPDITVITPVFDEAGkeVVFYVASRGHHTDIGGLGGTSMPPNSTELWQEGAAIKSFKLIQNGVfDEKGITKILLE-PgnypgcngsRRLSDN 933 
                      ************765478**********************************************99*******995.5599************ PP

  Hydantoinase_B  176 lgDlkAqiaanqvgerrlkelieeyGldtveaamdeildnaeravraalaelpd...gtyeaedylddgipikvtvtidgde.atvDftgtsp 264 
                      l+DlkAq+aan++g +++++l++e + +tv+ +m++i++nae avr+ l+e  +    ++  ed +d+g+ ik+++ti++d  at+Dftgts 
      KKY20779.1  934 LSDLKAQVAANNKGLALVQALMRESSQETVQMYMSAIQENAEVAVRSFLKETLRvrgPVLASEDDMDNGSYIKLQITIQEDGnATFDFTGTSC 1026
                      *************************************************87777786778899***************99999********** PP

  Hydantoinase_B  265 qvkgniNaplavtlsaviyvlrclvdediplNeGclrpievklpegsllnpsepaavvggnvetsqrvvdvvlkalaqalpervaAasqgtmn 357 
                      ++ gn+Nap+a+t+sa++y lr l+++dip+N+Gcl+p++v+lp g+llnps+  av++gn++tsqr+vdv+lka+a      va asqg+mn
      KKY20779.1 1027 ELLGNMNAPPAITHSALLYSLRLLIGTDIPMNQGCLSPTRVILPSGCLLNPSDGPAVCAGNTQTSQRLVDVILKAFA------VAGASQGCMN 1113
                      *****************************************************************************......9********* PP

  Hydantoinase_B  358 nltfggvderg.......geffgyyetiagGaGArpgkdGasavhvhmtntrntdvEilErryPvlverfelrpdsgGaGkyrGGdGvvreie 443 
                      +l f g   r+       g ++++ eti+gG+GA++++dGas+vh+hmtntr+td+E lE+ryPv++++f++r++sgG+G   GGdGv+r+ie
      KKY20779.1 1114 CLGFFGEGGRDsngnplaGFAYAFGETICGGSGATAEADGASGVHTHMTNTRITDPESLEKRYPVVLREFSIRKGSGGQGMRSGGDGVIRDIE 1206
                      ****65555445669*998888*********************************************************************** PP

  Hydantoinase_B  444 flepevtvsilserrvfapwGlaGGepGargrvvlnllvr......geeenlggkatvelkagdvlvietpGGGGyGd 515 
                      +++p +++s+++errv++p+G+ GGepG+rg+   n++v+      ++++nlg+k+ v++++gd+++i+tpGGGG+G+
      KKY20779.1 1207 CRAP-LKFSVMTERRVTSPYGMSGGEPGSRGA---NYWVKknpdgsDRWINLGPKNMVAMSTGDRCIIQTPGGGGFGK 1280
                      ***9.***************************...99999999999*******************************7 PP

>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.65   2.9e+03      82      96 ..      15      29 ..      14      38 .. 0.83
   2 !  332.9   0.0  3.4e-103   1.5e-99       1     290 [.     248     542 ..     248     543 .. 0.98
   3 ?   -2.0   0.1      0.36   1.6e+03     249     286 ..    1274    1312 ..    1267    1313 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.65
  Hydantoinase_A 82 ItfDmGGTstDvsli 96
                    I +D GGT tD+ + 
      KKY20779.1 15 IAIDRGGTFTDIWAT 29
                    889********9765 PP

  == domain 2  score: 332.9 bits;  conditional E-value: 3.4e-103
  Hydantoinase_A   1 rtetavvnAylspilreylesvekslekrgak.arlmvmqsdGglvsadearkkpvetilSGPaaGvvgaaat.sklagekkvItfDmGGTstDv 93 
                     r+++a  +Ayl+p +++yl++++k +e+       + +mqsdGglv  d++++   + ilSGPa+Gvvg+a+t  +++++ ++I+fDmGGTstDv
      KKY20779.1 248 RGSSASADAYLTPEIKRYLQGFQKGFEEGHLDdVCCEFMQSDGGLVRYDRFSGL--KGILSGPAGGVVGYARTsFNTTTAIPIIGFDMGGTSTDV 340
                     8899***********************9876657889****************9..*****************77889999************** PP

  Hydantoinase_A  94 slikdgevevsleteiagvkvrlpaldirtvgagGgsilvvdeggklrvgpesagadpgpacyrkGgteltvTDanlvLGrlqpedfls..gpdg 186
                     s++  g++e+++et++agv++++p+ldi+tv+agGgsil ++++g + vgpesa ++pgpacyrk g +ltvTDanl+LGrl pe+f+   gp +
      KKY20779.1 341 SRYG-GTFEHVFETTTAGVTIQSPQLDINTVAAGGGSIL-TWKNGLFAVGPESASSHPGPACYRKNG-PLTVTDANLFLGRLVPESFPRifGPTE 432
                     ****.**********************************.***************************.*************************** PP

  Hydantoinase_A 187 dqkldvelarrafeelakelnlk......veevAegilsvavenmanavrklsvergldpkeltlvvfGGaGaqhaaalaeelgvkkvivppyag 275
                     +++ld++++r++f el++++n +      +ee+A g+l+va+e m++++r l++++g+ + +++l vfGGaG+qha+ +a +lg+ ++i+++y++
      KKY20779.1 433 NEPLDEDIVREKFLELTAKINAEtggslsAEEIACGFLDVANEAMCRPIRALTEAKGHLVANHHLSVFGGAGGQHACDIASNLGIDTIIIHKYSS 527
                     *********************************************************************************************** PP

  Hydantoinase_A 276 vlsalGmalAdvree 290
                     +lsa+GmalAd+ +e
      KKY20779.1 528 ILSAYGMALADIIQE 542
                     ***********9876 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.36
  Hydantoinase_A  249 GGaG.aqhaaalaeelgvkkvivppyagvlsalGmalAd 286 
                      GG+G + + + l   ++v+k   p++ g+++a++ a A+
      KKY20779.1 1274 GGGGfGKIGCSLPPTTNVSKLHHPRAMGSIAAYATAQAE 1312
                      5555588999999*********************99885 PP

>> Hydant_A_N  Hydantoinase/oxoprolinase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.8   0.0   2.5e-58   1.1e-54       1     175 [.      14     225 ..      14     228 .. 0.98
   2 ?    1.7   1.4     0.042   1.9e+02       2      15 ..     329     342 ..     328     360 .. 0.82

  Alignments for each domain:
  == domain 1  score: 184.8 bits;  conditional E-value: 2.5e-58
  Hydant_A_N   1 rigIDvGGTfTDavaldekeeevavlKllst.....pdavaegirealeevleesipr.....tskidvvrmGTTvatNallerkgervaLittkgfrd 89 
                 ri+ID+GGTfTD+ a+ +  +   v+Klls+     +da++egir +l++  + +ipr     + +i+++rmGTTvatNallerkg + a+++tkgf+d
  KKY20779.1  14 RIAIDRGGTFTDIWATAPR-QPDLVFKLLSVdpsnyEDAPTEGIRVVLSTYGGTEIPRgvplpKMRIESIRMGTTVATNALLERKGTKHAFLVTKGFKD 111
                 79***************98.999**************************************************************************** PP

  Hydant_A_N  90 lleigrqnrpdlfelrikkplvlyeevvevdervead............................gevlkpldeeevrealkalkaagvesiavvllhS 160
                 ll ig+q+rp+lf+l+ikkp+vly++v ev+erv+++                             ++lkplde+ ++ +l++l+++g++ ia+++ hS
  KKY20779.1 112 LLDIGYQSRPHLFDLNIKKPEVLYSQVCEVEERVTIEgfdedvdgqvcaleavpgvlehglngqlIRILKPLDEAGLKTQLQELRQNGYDTIAICFTHS 210
                 *************************************************************************************************** PP

  Hydant_A_N 161 ylnpehElrvaeiar 175
                 y++p hE r++++a 
  KKY20779.1 211 YAFPMHEVRAGQLAV 225
                 **********99885 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.042
  Hydant_A_N   2 igIDvGGTfTDava 15 
                 ig D+GGT TD+  
  KKY20779.1 329 IGFDMGGTSTDVSR 342
                 899********965 PP

>> eRF1_1  eRF1 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.94   4.2e+03      12      49 ..     711     748 ..     708     780 .. 0.82
   2 ?   12.6   0.0   2.2e-05       0.1      55     109 ..     957    1014 ..     915    1019 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.94
                 SCCEEEEEE-SCHHHHHHHHHCHTTHEEEEEEEECHHH CS
      eRF1_1  12 gsgsvtLipeddedlwhlynliapgdsvrastvrkvqr 49 
                  ++++ ++pe +  +     +++    v+ +++ +v +
  KKY20779.1 711 ATQTIVIVPEAKAKILSSHVILDVTSAVKNNISDQVAN 748
                 67899999999999999999999999999999998866 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.2e-05
                  ..--CEEEEEEEEEEEEEEECTT...SSEEEEEEEEEEGGGG--TTSEEEEEE-TTSE CS
      eRF1_1   55 sreservklkLtikvekvdfdkd...agvlrisGkvieenehvklgafhtldlelkrp 109 
                  ++++e+v++ +   +e+ ++  +   +++lr++G v  +++++ +g+++ l++ ++++
  KKY20779.1  957 ESSQETVQMYMSAIQENAEVAVRsflKETLRVRGPVLASEDDMDNGSYIKLQITIQED 1014
                  344799999999999999999887788**************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.50
# Mc/sec: 7881.91
//
Query:       KKY20780.1  [L=281]
Description: putative vacuolar protein sorting protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.3e-06   25.3   0.0    4.9e-05   23.0   0.0    2.0  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.7e-09   4.9e-05      10     123 ..      43     150 ..      35     160 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.7e-09
  Acyltransferase  10 lpekgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleegklvviFPEGtr 103
                      lp+  + +++ NH+s lD+l++++++       +   +  + + +i l++ ++r++    ++    +++   l+++    +++++v +FPE t+
       KKY20780.1  43 LPR-PGTVIALNHTSPLDALYIAAIFDPI---FTASYPTTRLVERISLMQAIYRAFAQPLVEP-PPGTKLVELQTLI-DKNHDRVVAVFPECTT 130
                      554.7899******************222...3555566677778899999999999999999.4444444444443.3466788********* PP

  Acyltransferase 104 sregellpfkkGlvrlaaka 123
                      ++ + +lpf+ +l ++  ++
       KKY20780.1 131 TNGRAILPFSPSLLSIGKRT 150
                      ************99985555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1758.85
//
Query:       KKY20781.1  [L=605]
Description: putative kinesin motor domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   8.1e-105  350.4   1.1   8.1e-105  350.4   1.1    2.3  3  Kinesin         Kinesin motor domain
    2.1e-61  206.2   0.1    2.1e-61  206.2   0.1    2.5  2  Microtub_bd     Microtubule binding
  ------ inclusion threshold ------
      0.017   15.6   2.5      0.017   15.6   2.5    4.2  4  T3SSipB         Type III cell invasion protein SipB
       0.21   12.0   0.0       0.21   12.0   0.0    3.4  1  AAA_16          AAA ATPase domain
       0.63   10.3   0.0       0.63   10.3   0.0    3.8  3  AAA_22          AAA domain
        1.2    8.8  16.9        3.5    7.3   1.6    4.4  5  RPW8            Arabidopsis broad-spectrum mildew resistance 
        1.3    9.2   0.0        1.3    9.2   0.0    3.1  2  Nmad5           Nucleotide modification associated domain 5
        1.5    8.3  40.9       0.39   10.2  27.4    3.3  3  PspA_IM30       PspA/IM30 family
        1.8    8.9  44.1       0.98    9.8  11.0    3.8  4  OmpH            Outer membrane protein (OmpH-like)
        7.6    6.5   9.8        2.8    7.9   1.2    3.9  4  Sec20           Sec20
        7.9    7.2  46.9        0.4   11.3   8.0    4.9  5  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.3       1.5   2.5e+03     153     182 ..      62      91 ..      15     100 .. 0.53
   2 ?   -0.6   0.1      0.31     5e+02     254     287 ..     188     221 ..     172     224 .. 0.80
   3 !  350.4   1.1    5e-108  8.1e-105       1     332 [.     266     593 ..     266     594 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.5
                 EBEEEECTTSCCEEETTS--EEESSHHHHH CS
     Kinesin 153 klkiredskkgevyvkgltevevksaeevl 182
                 + +++++++ +e+ +++l  ++ +++e+v 
  KKY20781.1  62 HRQLQDQKRDHEIEIDDLDRQHRNELEDVR 91 
                 223333344445666666666666666554 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.31
                 HHHHHHHHHHHHHHHHHHHHHHHTCCTSTSCGGG CS
     Kinesin 254 lkEaaniNkSLlaLgrvisaLaekkkskhipYRd 287
                   +++ + +SL aL+  i+ L +++ks+  +Y d
  KKY20781.1 188 ASNSTTMETSLQALRAKIEYLESDSKSQSEAYAD 221
                 567788899************9998888777755 PP

  == domain 3  score: 350.4 bits;  conditional E-value: 5e-108
                 EE-SSSHHHHTTTTEBCEEEEC......TCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHT CS
     Kinesin   1 RvRplnekekeeeeeeevevee......ekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTme 93 
                 RvRp+ ++e +e+++     e       e k  e+ks+  + ++++++f+Fdkvf++++++++v+ee+ ++l++s+l+Gyn++if+YGqtgsGKTyTm+
  KKY20781.1 266 RVRPTLSNEVDETARISFPDEVadgreiEVKGPEEKSSLGTVTTKNNAFAFDKVFGPSSQNQDVFEEI-SQLIQSALDGYNVCIFCYGQTGSGKTYTMS 363
                 899999999888887776554467888777888999999999*************************5.****************************** PP

                 BCTTTSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHH CS
     Kinesin  94 gkeeeeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekgeknr 192
                  +    +G+ipra+++++++ k  +e+  ++++++ s++E+Yne++ DLL   ++ +kkk +ir+d ++ +++++++t v+++s e+v ++l+k+ +nr
  KKY20781.1 364 SE----DGMIPRAVHQIYNTAKGLEEK-GWTYKMEGSFVEVYNENLNDLLGRADEFDKKKHEIRHDMQTCKTTITDVTIVDLDSPEKVEHILRKAMSNR 457
                 85....7**************999987.9************************9999999********99***************************** PP

                 TSTTSSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTSTSCGGGSHHH CS
     Kinesin 193 kvaetklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaekkkskhipYRdSkLT 291
                 ++a+tk+ne+SSRSH++f ++l+  n+ ++++   + ++lnLvDLAGsEr+++++  eg rlkE++niN+SL++Lg+vi aL + k   hipYR+SkLT
  KKY20781.1 458 SMAATKANERSSRSHSIFILKLTGVNSITGEK---SDGTLNLVDLAGSERLNHSKV-EGARLKETQNINRSLSCLGDVIGALGQGKDGGHIPYRNSKLT 552
                 **************************887776...78******************6.8999************************************** PP

                 HHTGGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCT CS
     Kinesin 292 rlLqdsLgGnsktlmivtvspssenleetlstlkfaerake 332
                  lLq sLgGnsktlm+v+vsp +++l+etl++lkfa+++++
  KKY20781.1 553 YLLQFSLGGNSKTLMFVMVSPLQTHLSETLTSLKFATKVHN 593
                 *************************************9986 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   1.4       1.8   2.9e+03       5      19 ..     110     124 ..     106     236 .. 0.70
   2 !  206.2   0.1   1.3e-64   2.1e-61       1     149 []     240     408 ..     240     408 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.8
                  HHHHHHCHHHHHHHC CS
  Microtub_bd   5 etlRrkleNtiqelk 19 
                  ++lRr le ++ e k
   KKY20781.1 110 HKLRRALEDQVAEEK 124
                  567788888877766 PP

  == domain 2  score: 206.2 bits;  conditional E-value: 1.3e-64
                  HHHHHHHHHHCHHHHHHHCTB-EEEEEEECCCS-T....EEEETTT.......................TTTEEEE-SEEEECTTHCCCCCCCCHHHH CS
  Microtub_bd   1 lekeetlRrkleNtiqelkGniRvfarvrpelesek...akikfpe....................eekkkkkefsFdrvfeseseqeevfeeisqlv 75 
                  l+ eetlRrkl+N++qelkGniRvf+rvrp+l++e    a+i+fp+                    + ++k++ f Fd+vf ++s++++vfeeisql+
   KKY20781.1 240 LRAEETLRRKLHNQVQELKGNIRVFCRVRPTLSNEVdetARISFPDevadgreievkgpeeksslgTVTTKNNAFAFDKVFGPSSQNQDVFEEISQLI 337
                  5789****************************997778899999955667778888899999****999***************************** PP

                  HHHHTT--EEEEEEES................ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd  76 qsaldgynvcifaygqTGsGKtyTmegeeeeagmipraveeifetiselkekgwkyeielqfveiynekvqDlL 149
                  qsaldgynvcif+ygqTGsGKtyTm++   e+gmiprav++i++t++ l+ekgw+y++e++fve+yne+++DlL
   KKY20781.1 338 QSALDGYNVCIFCYGQTGSGKTYTMSS---EDGMIPRAVHQIYNTAKGLEEKGWTYKMEGSFVEVYNENLNDLL 408
                  ***************************...9******************************************8 PP

>> T3SSipB  Type III cell invasion protein SipB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   3.9       1.1   1.8e+03      59     116 ..      16      72 ..       3     109 .. 0.47
   2 ?    5.0  10.1     0.019        31      37     121 ..      91     174 ..      84     193 .. 0.72
   3 ?   15.6   2.5     1e-05     0.017      16      74 ..     194     252 ..     190     263 .. 0.86
   4 ?   -0.3   0.1      0.83   1.3e+03      85      93 ..     406     414 ..     322     475 .. 0.48

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHH...HHH CS
     T3SSipB  59 tddleaaiekadqaksaadaatkkvdeaqkrlkeLaPdePekakleaaeqQagaa.ada 116
                 t+ l + +  +++   + + + + ++e  ++lke    +  + ++ aa++Q++++  d 
  KKY20781.1  16 TETLRDTMGVYKSSVNDLERVRAELTETNASLKEQ--LDSVRDDIYAAHRQLQDQkRDH 72 
                 44444444555555555555555555555555443..2334555555555555442222 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.019
                 TTTTT----STHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHH..HHHHHHHH CS
     T3SSipB  37 qqeaasklSdelqtalseakgatddleaaiekadqa..ksaadaatkkvdeaqkrlkeLaPdePekakleaaeqQagaaadalqade 121
                 +q+++++l  e  +  +e++++ ++le+++++ + +  ++a +a t+ + eaq+rl eL+  e + ++++++++ ++     lq ++
  KKY20781.1  91 RQANKQQLDCERADFQEEMHKLRRALEDQVAEEKRLrmQAANEASTQGALEAQRRLMELQNKERDIQAAKEEVERLN---GELQRER 174
                 67777777777778889999**********9999863267778999*************666666666666655554...4444444 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 1e-05
                 HHHCHHHHHHHHHHHHHHHHHTTTTT----STHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     T3SSipB  16 gnkSLsqLenrlaawkamskaqqeaasklSdelqtalseakgatddleaaiekadqaks 74 
                  + SL++L+ +++  ++ sk+q ea   +  ++q+a++ea+ ++++l a      +++ 
  KKY20781.1 194 METSLQALRAKIEYLESDSKSQSEAYADMERKMQEAIDEARICQEKLRAEETLRRKLHN 252
                 589******************************************99987665555555 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.83
                 HHHHHHTT- CS
     T3SSipB  85 eaqkrlkeL 93 
                 + + r +e+
  KKY20781.1 406 DLLGRADEF 414
                 333333333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00013      0.21      11      45 ..     332     366 ..     328     476 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
      AAA_16  11 qLlsalervrsgrpelvllsGesGvGKsslvrell 45 
                 ++ ++++++ +g   +++++G+ G+GK+  + +  
  KKY20781.1 332 EISQLIQSALDGYNVCIFCYGQTGSGKTYTMSSED 366
                 45666777777888**************9875544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   1.9      0.57   9.3e+02      51     114 ..      31      92 ..       5     107 .. 0.67
   2 ?   -0.8   2.0       1.1   1.7e+03      43      86 ..     205     254 ..     105     265 .. 0.64
   3 ?   10.3   0.0   0.00039      0.63       7      22 ..     347     362 ..     341     384 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.57
      AAA_22  51 tsskdllrellralglelka...erlsseellealeqalraravielliiDEaqhlrseealeeLrs 114
                 ++++    ++  +l++ + +   + +s ++ + a +++l+++++ + + iD+ ++  + + le++r+
  KKY20781.1  31 NDLE----RVRAELTETNASlkeQLDSVRDDIYAAHRQLQDQKRDHEIEIDDLDRQ-HRNELEDVRQ 92 
                 3333....333333333333443688888888999999999999889999999998.8888888854 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.1
      AAA_22  43 vfvtlpsstsskdllrellralglelka......erlsseellealeqal 86 
                 +++  + s+s+++ + ++ r++++  ++      +   +e l+++l++++
  KKY20781.1 205 IEYLESDSKSQSEAYADMERKMQEAIDEaricqeKLRAEETLRRKLHNQV 254
                 23334444456666666666666555555555543444444445555555 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00039
      AAA_22   7 ilvvtGesGtGKTtll 22 
                 +++++G++G+GKT+++
  KKY20781.1 347 CIFCYGQTGSGKTYTM 362
                 89***********997 PP

>> RPW8  Arabidopsis broad-spectrum mildew resistance protein RPW8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.021        34      26      70 ..       8      49 ..       3      62 .. 0.80
   2 ?   -1.6   0.1       1.2     2e+03      52      75 ..      91     115 ..      85     132 .. 0.62
   3 ?    5.9   0.6    0.0058       9.5      33      76 ..     145     188 ..     128     190 .. 0.84
   4 ?    7.3   1.6    0.0021       3.5      40     122 ..     193     276 ..     188     281 .. 0.85
   5 ?   -1.8   0.0       1.4   2.2e+03      66     104 ..     402     441 ..     398     456 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.021
        RPW8 26 ksldfksilkrLestleritPvvkeieklnkeldrpreeieeLkk 70
                k   ++s  + L +t+   + +v+++e++++el + ++    Lk+
  KKY20781.1  8 KFNATASETETLRDTMGVYKSSVNDLERVRAELTETNAS---LKE 49
                556788999***********************9666643...333 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
        RPW8  52 eklnkel.drpreeieeLkklLeka 75 
                  + nk+  d++r++++e +++L++a
  KKY20781.1  91 RQANKQQlDCERADFQEEMHKLRRA 115
                 5555555566665555555555544 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0058
        RPW8  33 ilkrLestleritPvvkeieklnkeldrpreeieeLkklLekae 76 
                  l +L++   +i+   +e+e+ln el+r+r+  ++L++ L  a 
  KKY20781.1 145 RLMELQNKERDIQAAKEEVERLNGELQRERKLNDDLRENLSTAA 188
                 5666777777899999***********************99886 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0021
        RPW8  40 tle.ritPvvkeieklnkeldrpreeieeLkklLekaekLVekcs.klkrynvlkkyrYkkklkeLekslrkfvqvelqvqqvrd 122
                 t+e +++ ++++ie l+ +++++ e   ++++++++a +  + c  kl+  + l++ + +++++eL  ++r f+ v   + +  d
  KKY20781.1 193 TMEtSLQALRAKIEYLESDSKSQSEAYADMERKMQEAIDEARICQeKLRAEETLRRKL-HNQVQELKGNIRVFCRVRPTLSNEVD 276
                 5542688999*****************************9999973788888888866.6789***********99877776666 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 1.4
        RPW8  66 eeLkklLekaekLVekcsklk.rynvlkkyrYkkklkeLe 104
                 e+L++lL +a +  +k  +++  ++ +k+ +    + +L+
  KKY20781.1 402 ENLNDLLGRADEFDKKKHEIRhDMQTCKTTITDVTIVDLD 441
                 5677777777777777777776677777666666555555 PP

>> Nmad5  Nucleotide modification associated domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   2.5     0.056        91       2      89 ..     175     262 ..     174     289 .. 0.82
   2 ?    9.2   0.0   0.00077       1.3      51     159 ..     327     435 ..     315     436 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.056
       Nmad5   2 rLTkdirdqIvanaLkkhgiaekekalrkeradlaeevrldalggkkteaalreiikeieklqsklpkeglstnkpkstgsvidvnla 89 
                 +L+ d+r+ + ++a   + +++  +alr++ + l  +    + ++ ++e++++e+i e +  q+kl++e +  +k +++ ++++ n++
  KKY20781.1 175 KLNDDLRENLSTAASNSTTMETSLQALRAKIEYLESDSKSQSEAYADMERKMQEAIDEARICQEKLRAEETLRRKLHNQVQELKGNIR 262
                 7999999999999999999999999999999999999999999999999999999999999999999998888887777777766665 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00077
       Nmad5  51 aalreiikeieklqsklpkeglstnkpkstgsvidvnla.Ga...rvelyfngkkletvvlasvdeiaketkslpkvvleadnplvkrfdelekaqeel 145
                 +++ e+i+++ + + + +++ +  ++ +++g+++ +  + G+    v+  +n      + l+++   +k++ s  +v+ e  n+l+ r de++k++ e+
  KKY20781.1 327 QDVFEEISQLIQSALDGYNVCIFCYGQTGSGKTYTMSSEdGMiprAVHQIYNT----AKGLEEKGWTYKMEGSFVEVYNENLNDLLGRADEFDKKKHEI 421
                 55555566666666666666666666888888888888877777533333333....5568888888888888887888889***************** PP

       Nmad5 146 rekrkaikatVtav 159
                 r + ++ k t+t v
  KKY20781.1 422 RHDMQTCKTTITDV 435
                 **********9976 PP

>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.7     0.071   1.2e+02     102     143 ..      25      66 ..      10      76 .. 0.48
   2 ?   10.2  27.4   0.00024      0.39      23     153 ..      93     224 ..      81     229 .. 0.89
   3 ?    3.9   1.4     0.021        35      87     122 ..     227     262 ..     220     264 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.071
   PspA_IM30 102 aletqlaqqrsaveqlrkqlealetkieelkakkellkarek 143
                  ++ +++ ++  +++l++  + l+ +++ +++ + +   +++
  KKY20781.1  25 VYKSSVNDLERVRAELTETNASLKEQLDSVRDDIYAAHRQLQ 66 
                 444444444444444444444444444444444433333333 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00024
   PspA_IM30  23 DPekileqairdmqselakarqalaqviarqkqlerkleeqkeqakklekkAkaALtkgeeeLArealaeikslekqaealetqlaqqrsaveqlrkql 121
                   +++l+ +  d q+e+ k+r+al++++a++k+l +++++++    +le++ ++   +++e  +++a +e ++l  ++++++++ + +r+    +  + 
  KKY20781.1  93 ANKQQLDCERADFQEEMHKLRRALEDQVAEEKRLRMQAANEASTQGALEAQRRLMELQNKERDIQAAKEEVERLNGELQRERKLNDDLRENLSTAASNS 191
                 44588888889****************************************998888889*************************************** PP

   PspA_IM30 122 ealetkieelkakkellkarekaak.aqeavqk 153
                 +  et +++l+ak+e l + +k+++ a +++++
  KKY20781.1 192 TTMETSLQALRAKIEYLESDSKSQSeAYADMER 224
                 *******************99998625555655 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.021
   PspA_IM30  87 realaeikslekqaealetqlaqqrsaveqlrkqle 122
                 +ea+ e+   +++++a+et+  +++ +v++l+++++
  KKY20781.1 227 QEAIDEARICQEKLRAEETLRRKLHNQVQELKGNIR 262
                 6899999999999*****************999985 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  11.0    0.0006      0.98      10     108 ..      25     123 ..      20     128 .. 0.61
   2 ?    5.0  18.6     0.018        29      18     100 ..      92     186 ..      89     191 .. 0.71
   3 ?    6.6   8.7    0.0057       9.3      22     100 ..     178     256 ..     174     261 .. 0.75
   4 ?   -2.6   0.0       3.9   6.3e+03      62      77 ..     411     426 ..     398     460 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0006
                 HHHHS.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.......-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  10 ilees.pegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle......keekeqelqkkeqelqqkqqqkaqelqkkqqellkpildkinka 101
                 ++++s ++ ++++++l ++ ++l+++l++ ++++ ++ ++lq+++++ e       ++ ++el++ +q+ +       q+l  ++++++++ + k++ a
  KKY20781.1  25 VYKSSvNDLERVRAELTETNASLKEQLDSVRDDIYAAHRQLQDQKRDHEieiddlDRQHRNELEDVRQANK-------QQLDCERADFQEE-MHKLRRA 115
                 56666689999******************************976666523533333333333333333333.......4555555444444.3333333 PP

                 H.HHHHHH CS
        OmpH 102 i.kevake 108
                 + ++va+e
  KKY20781.1 116 LeDQVAEE 123
                 32445555 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS...........-HHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHH CS
        OmpH  18 kaaqeqlekkfkklqaeleakekelqklqeelqkkakkl.e.........keekeqelqkkeqelqqkqqqka...qelqkkqqellkpildkink 100
                 +a ++ql+ +++++q+e+ +++++l+++++e ++  +++ +          +++  elq+ke+++q+++++ +   +elq+++ +l + + +++ +
  KKY20781.1  92 QANKQQLDCERADFQEEMHKLRRALEDQVAEEKRLRMQAaNeastqgaleAQRRLMELQNKERDIQAAKEEVErlnGELQRER-KLNDDLRENLST 186
                 667789999999999999999999998888555444443335566687777777777**********6666667777777777.555555555554 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0057
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHH CS
        OmpH  22 eqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqka..qelqkkqqellkpildkink 100
                 ++l +  ++ +   +++e++lq+l+++++  +++  ++ + ++++++e+++q++ ++++  qe  ++++ l++++ +++++
  KKY20781.1 178 DDLRENLSTAASNSTTMETSLQALRAKIEYLESD--SKSQSEAYADMERKMQEAIDEARicQEKLRAEETLRRKLHNQVQE 256
                 5666677777888889999999999999733333..778888899999999998888888966666666888888888886 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 3.9
                 HHHHHHHHHHHHHHHH CS
        OmpH  62 eqelqkkeqelqqkqq 77 
                 + e++kk+ e++ ++q
  KKY20781.1 411 ADEFDKKKHEIRHDMQ 426
                 3444444444444443 PP

>> Sec20  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.1   1.8e+03      27      54 ..      22      49 ..      12      56 .. 0.76
   2 ?    0.5   0.1      0.34   5.6e+02       5      42 ..      53      91 ..      49     100 .. 0.78
   3 ?    7.9   1.2    0.0017       2.8      10      60 ..     128     178 ..     115     207 .. 0.91
   4 ?    0.2   0.1      0.45   7.4e+02       3      47 ..     212     256 ..     210     269 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.1
       Sec20 27 nleeldastkslekleeeykqvedvlsr 54
                ++   ++s ++le++  e+++++ +l+ 
  KKY20781.1 22 TMGVYKSSVNDLERVRAELTETNASLKE 49
                5666678889999999999999988875 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.34
       Sec20  5 qiTeslraisqllsqevqqSeenleeldastk.slekle 42
                ++ + + a +++l+++    e+ +++ld + + +le++ 
  KKY20781.1 53 SVRDDIYAAHRQLQDQKRDHEIEIDDLDRQHRnELEDVR 91
                677788999******************988641566655 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0017
       Sec20  10 lraisqllsqevqqSeenleeldastkslekleeeykqvedvlsrskklvk 60 
                 ++a ++   q+ ++ +  l+el+++ +++++++ee   +++ l+r +kl  
  KKY20781.1 128 MQAANEASTQGALEAQRRLMELQNKERDIQAAKEEVERLNGELQRERKLND 178
                 788888889999999********************************9955 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.45
       Sec20   3 akqiTeslraisqllsqevqqSeenleeldastkslekleeeykq 47 
                 +k+  e+  + ++ +++++++  +  e+l+a      kl+++ ++
  KKY20781.1 212 SKSQSEAYADMERKMQEAIDEARICQEKLRAEETLRRKLHNQVQE 256
                 555667778899999999999999999999876666666555555 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   1.1     0.039        64      16      59 ..      24      67 ..      13      79 .. 0.60
   2 ?   -0.3  19.7         1   1.6e+03      18      94 ..      69     151 ..      38     155 .. 0.70
   3 ?   11.3   8.0   0.00024       0.4      41      95 ..     150     204 ..     140     208 .. 0.89
   4 ?    3.8   3.9     0.055        90      46      93 ..     211     258 ..     204     261 .. 0.86
   5 ?   -2.1   0.0       3.6   5.9e+03      24      41 ..     413     430 ..     397     465 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.039
  HIP1_clath_bdg 16 svarqaqeeverekkeleeelerlkeeaerkleeqkeelekLkr 59
                     v + + +++er++ el+e+  +lke+ ++  ++      +L+ 
      KKY20781.1 24 GVYKSSVNDLERVRAELTETNASLKEQLDSVRDDIYAAHRQLQD 67
                    55666667777777777777777777776666544443333333 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1
  HIP1_clath_bdg  18 arqaqeeverekkeleeelerlkeeaerkle....eqkeelekLkreleakraelarlkssLes..seqsgeqlssqlaaLqa 94 
                      r +  e++   ++  +ele++++ ++++l+    + +ee+ kL+r le++ ae +rl+   ++  s+q   + + +l++Lq+
      KKY20781.1  69 KRDHEIEIDDLDRQHRNELEDVRQANKQQLDceraDFQEEMHKLRRALEDQVAEEKRLRMQAANeaSTQGALEAQRRLMELQN 151
                     34444577777778888888888888888877555678899999999999999888776555440044555566667888874 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00024
  HIP1_clath_bdg  41 eeaerkleeqkeelekLkreleakraelarlkssLesseqsgeqlssqlaaLqaE 95 
                     +++er ++  kee+e+L+ el+++r+  + l++ L++ +  +++++++l+aL+a 
      KKY20781.1 150 QNKERDIQAAKEEVERLNGELQRERKLNDDLRENLSTAASNSTTMETSLQALRAK 204
                     567899999*******************************************985 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.055
  HIP1_clath_bdg  46 kleeqkeelekLkreleakraelarlkssLesseqsgeqlssqlaaLq 93 
                       + q+e    ++r +++  +e    ++ L+ +e+   +l +q+++L+
      KKY20781.1 211 DSKSQSEAYADMERKMQEAIDEARICQEKLRAEETLRRKLHNQVQELK 258
                     567899999999999999999999999999999999999999999996 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 3.6
  HIP1_clath_bdg  24 everekkeleeelerlke 41 
                     e +++k+e+ ++++  k 
      KKY20781.1 413 EFDKKKHEIRHDMQTCKT 430
                     444455555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2337  (0.130347); expected 358.6 (0.02)
Passed bias filter:                      622  (0.0346924); expected 358.6 (0.02)
Passed Vit filter:                       131  (0.0073066); expected 17.9 (0.001)
Passed Fwd filter:                        58  (0.00323498); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.33u 0.34s 00:00:01.67 Elapsed: 00:00:00.53
# Mc/sec: 3417.39
//
Query:       KKY20782.1  [L=897]
Description: putative e3 ubiquitin-protein ligase rbbp6 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0006   19.6  11.6    0.00097   18.9  11.6    1.3  1  zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.012   15.8   0.0      0.027   14.6   0.0    1.7  1  U-box       U-box domain
        4.5    7.3  13.1        7.7    6.6  13.1    1.4  1  zf-RING_5   zinc-RING finger domain


Domain annotation for each model (and alignments):
>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9  11.6   1.6e-07   0.00097       2      45 ..      25      65 ..      24      68 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.6e-07
                GSB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHHTT-B-TTT-- CS
  zf-C3HC4_3  2 deeCviClerprnvvllpCgHlvlCeeCaekllkrkkkCpiCrr 45
                + +C iC +   n++ lpC+ + +Ce+C ++l   +++Cp+C  
  KKY20782.1 25 KLKCAICSKLALNAFKLPCCAQSICESCQSSL---QESCPVCEH 65
                679*****************************...9******85 PP

>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   4.5e-06     0.027       2      72 ..      23      91 ..      22      92 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.5e-06
                SGGGB-TTT-SB-SSEEEETTTEEEEHHHHHHHHTT.SSB-TTT.-SB--GGGSEE-HHHHHHHHHHHHHCT CS
       U-box  2 PdefldpitlelmkdPvilpsgvvvdrstiekhllsrdktdPft.repltqdqlipnlelKekIdefleekr 72
                P+ +++ i + l      lp      +s+ e++  s ++++P+   +pl++d  +p+ +l++ I+++l++ +
  KKY20782.1 23 PNKLKCAICSKLALNAFKLPC---CAQSICESCQSSLQESCPVCeHSPLSPDLCVPHKALRNTIKAYLKTAE 91
                666666666666666666664...458999999999*******999**********************9865 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  13.1    0.0013       7.7       1      43 [.      27      64 ..      27      65 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0013
   zf-RING_5  1 hCnkCfeklskeekfyltsCgHifCekClkkllekeavCpiCr 43
                +C +C++      +f l +C  ++Ce+C + l+     Cp+C+
  KKY20782.1 27 KCAICSKLA--LNAFKLPCCAQSICESCQSSLQ---ESCPVCE 64
                699****99..999*******************...******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (897 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.26s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 5978.35
//
Query:       KKY20783.1  [L=188]
Description: putative arylacetamide deacetylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-10   39.9   0.0    4.9e-10   39.6   0.0    1.1  1  Abhydrolase_3  alpha/beta hydrolase fold
    4.6e-10   38.9   0.0    5.3e-10   38.7   0.0    1.1  1  Say1_Mug180    Steryl acetyl hydrolase


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   5.5e-14   4.9e-10      69     209 ..       3     147 ..       1     149 [. 0.83

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 5.5e-14
                    TTCEEEEEEETHHHHHHHHHHHHHHHTT---.......EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSSGGGGGSTTTSG CS
  Abhydrolase_3  69 dpsrivlaGdSaGGnlaaavalrardegepk.......vagqvliyPvtdlertesesikkaeeladgplltraaldlfwrlylpeadrddplasp 157
                    d s+i++ GdSaGG+l++  +l+  d  e++       +   vli+P+t l     ++    ++++    l  ++l+l+  +y++  d++dp +sp
     KKY20783.1   3 DSSNICVSGDSAGGTLVLSNLLAPFDPLENSalqeslkPGLAVLISPWTHL--I--SDL---NRNTPSDYLDYESLRLYGHQYAGSTDVNDPIMSP 91 
                    889**************998865554422224455666**********955..4..222...23334457899*********************** PP

                    GGC.S-SST---...EEEEEETT-TTHHHHHHHHHHHHHTT--EEEEEETTEETTG CS
  Abhydrolase_3 158 lla.edlsglpp...tlvvvaefDplrdegeayaerlraagvevelieyegmvHgf 209
                     l+  +++++ p      + +e++++ +  +++   +++  vev+    +g +H++
     KKY20783.1  92 GLRvGSWRDVSPkhgFHFIFGEEEVFAKAIAHLIFDIEKDDVEVTQDAKKGGIHAW 147
                    *99558999888777899************************************98 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   5.9e-14   5.3e-10     195     354 ..       5     151 ..       1     170 [. 0.82

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 5.9e-14
  Say1_Mug180 195 knvvvlGdSaGGnlvLslllk......lsklnkvvlPkkaiaiSPWlnltildekekeylkasdklDvlclkglelfgklyvnnrepeeelktdefvn 286
                   n+ v GdSaGG+lvLs ll        s l+  + P  a++iSPW  l+         l+ +   D l +++l l+g+ y++ ++  +++  ++ + 
   KKY20783.1   5 SNICVSGDSAGGTLVLSNLLApfdpleNSALQESLKPGLAVLISPWTHLI-------SDLNRNTPSDYLDYESLRLYGHQYAGSTDV-NDPIMSPGLR 94 
                  69***************9998899966556778899***********998.......4566678889999**************554.4566777777 PP

  Say1_Mug180 287 ieknfdievWseilekckllityGddEilkdqikllidkiselkeksysepknvlidkqGiHigPilk 354
                  +        W+++  k     ++G++E++ + i  li  i + + +    +    ++k GiH  P+ +
   KKY20783.1  95 VGS------WRDVSPKHGFHFIFGEEEVFAKAIAHLIFDIEKDDVE----VT-QDAKKGGIHAWPVVN 151
                  777......**************************99999833222....22.224557788888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.48
# Mc/sec: 1173.00
//
Query:       KKY20784.1  [L=107]
Description: putative cbf nf-y family transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-10   41.0   5.0    3.6e-10   40.0   2.8    2.0  2  CBFD_NFYB_HMF    Histone-like transcription factor (CBF/NF-Y)
  ------ inclusion threshold ------
       0.04   14.3   5.0      0.049   14.0   1.0    2.1  2  Histone          Core histone H2A/H2B/H3/H4
      0.043   14.1   0.9      0.043   14.1   0.9    1.7  2  CENP-X           CENP-S associating Centromere protein X
      0.062   13.3   2.2      0.064   13.2   2.2    1.1  1  Pol_alpha_B_N    DNA polymerase alpha subunit B N-terminal
      0.073   13.3   0.3          6    7.1   0.0    2.3  2  CSN4_RPN5_eIF3a  CSN4/RPN5/eIF3a helix turn helix domain


Domain annotation for each model (and alignments):
>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   2.8     1e-13   3.6e-10      12      65 .]       1      54 [.       1      54 [. 0.98
   2 ?    1.1   0.0      0.13   4.8e+02      25      47 ..      55      77 ..      55      83 .. 0.75

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 1e-13
                   HHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF 12 mksdpdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65
                   m+ d+d++k+a++A+  +++++e+f   l ++Aa ++k++++K i+a+h+k A+
     KKY20784.1  1 MQADEDVGKVAQAAPTAVSKALELFMITLVTKAATEAKEKSSKRISAQHLKAAI 54
                   99*************************************************997 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.13
                   HHHHHHHHHHHHHHHHHHHHHHH CS
  CBFD_NFYB_HMF 25 AkeliaecveefieelaseAaei 47
                   Ak+ + +++ e ie++ ++A  +
     KKY20784.1 55 AKDEVLDFLNEIIEKVPDAAEAK 77
                   67888889999999998888655 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.0   1.4e-05     0.049      79     128 ..       5      54 ..       1      57 [. 0.90
   2 ?    2.6   0.2     0.047   1.7e+02      26      45 ..      82     102 ..      60     107 .] 0.46

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.4e-05
                 SSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHH CS
     Histone  79 kedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlAr 128
                 ++  ++ + a++a+ +alE +++ l + A+  ak+   ++i ++++++A+
  KKY20784.1   5 EDVGKVAQAAPTAVSKALELFMITLVTKAATEAKEKSSKRISAQHLKAAI 54 
                 566678899**************************************998 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.047
                 HT..TS-SSSSB--TTT-XTTH CS
     Histone  26 er..kasskskkkkkrryrpgt 45 
                 ++  + ++++  kkkr++r+++
  KKY20784.1  82 AAtdSPEADEG-KKKRNARRKK 102
                 11323333333.3333333332 PP

>> CENP-X  CENP-S associating Centromere protein X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.9   1.2e-05     0.043      17      69 ..       8      55 ..       2      70 .. 0.83
   2 ?   -0.7   0.1      0.51   1.8e+03      38      54 ..      66      82 ..      56     105 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
                -EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SE.....EECHHHHHHCH CS
      CENP-X 17 tkItkdalelvaeylklFvrEavaRaaeeaeeegkeeseksklevedLekiap 69
                 k+++ a ++v++ l+lF    v  aa ea+e+ +++     +  ++L+   +
  KKY20784.1  8 GKVAQAAPTAVSKALELFMITLVTKAATEAKEKSSKR-----ISAQHLKAAIA 55
                5999************************999998888.....88899987544 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.51
                HHHHHHHHHHHTT-SE. CS
      CENP-X 38 avaRaaeeaeeegkees 54
                 +    + ae++gk++ 
  KKY20784.1 66 IIEKVPDAAEAKGKHRA 82
                55544444444444433 PP

>> Pol_alpha_B_N  DNA polymerase alpha subunit B N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.2   1.8e-05     0.064      59     127 ..      32      97 ..       9     107 .] 0.60

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.8e-05
                    XXXXXXXXXXXXXX.XXXX.........XXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Pol_alpha_B_N  59 raksskkpktekksaaatpr.aaakngdlfgmldglipstpalkkrklssakrksafetpsrsksssskl 127
                    +a +++k+k++k++ +a +  aa ++  + ++l+++i + p   ++k ++   ++a ++p+ ++ +++ +
     KKY20784.1  32 KAATEAKEKSSKRI-SAQHLkAAIAKDEVLDFLNEIIEKVPDAAEAKGKH---RAATDSPEADEGKKKRN 97 
                    34455788999998.4444436777779*************985555442...22333333332222211 PP

>> CSN4_RPN5_eIF3a  CSN4/RPN5/eIF3a helix turn helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0017         6      19      41 ..       5      27 ..       1      28 [. 0.85
   2 ?    4.2   0.1     0.014        49      18      28 ..      64      74 ..      62      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0017
  CSN4_RPN5_eIF3a 19 eliEKIasaePeWmakaleeqmt 41
                     e + K+a+a+P  + kale  m+
       KKY20784.1  5 EDVGKVAQAAPTAVSKALELFMI 27
                     5578***************8887 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.014
  CSN4_RPN5_eIF3a 18 NeliEKIasae 28
                     Ne+iEK+  a+
       KKY20784.1 64 NEIIEKVPDAA 74
                     9*****98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1144  (0.0638072); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 680.95
//
Query:       KKY20785.1  [L=842]
Description: putative dna polymerase epsilon subunit c [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-73  246.2   0.0    6.6e-73  245.6   0.0    1.2  1  RAI16-like  Retinoic acid induced 16-like protein
  ------ inclusion threshold ------
      0.067   12.5   1.0      0.083   12.2   0.1    1.5  2  Rcd1        Cell differentiation family, Rcd1-like


Domain annotation for each model (and alignments):
>> RAI16-like  Retinoic acid induced 16-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.6   0.0   7.4e-77   6.6e-73       1     358 [.      81     437 ..      81     439 .. 0.91

  Alignments for each domain:
  == domain 1  score: 245.6 bits;  conditional E-value: 7.4e-77
  RAI16-like   1 cleyllknkiletLctlgeadkpegvkkevlkfytkLlsklseplLphesvhrpllkLllsssgsst..sssdvekelvsLLetlcaklrkdpnLleff 97 
                 cl ++++++ +  +++l+ a ++ +   ++ +f++ L++ + e +L+ + ++r+l +L+ +  g++t   ++  e++l++LL+++++k+r dp +l+++
  KKY20785.1  81 CLLHAATSQFYIIVTKLALAAFDVELLDDAARFFNILIDGEAEGVLDSRIFARALIDLVKRTTGNVTiaVGPYEEGNLIELLFAVANKIRMDPDILQAW 179
                 999999****************************************************9999999888888888************************* PP

  RAI16-like  98 lenkskqqseesesatkesaaatekenfilfslLlgyvhseGrigerAreaLllllelaseeetaekpliestdlcpvlateLgalYslLpkkl..... 191
                 + ++ +q + e++ +++ +a++ +k++f+lf+lL++yvh+ Grig++Ar++Ll+l e+as++  +ek++ie +dl++++a++LgalYs+L+++l     
  KKY20785.1 180 FYPERNQ-QGEKSGTSSGFAGNVRKNDFPLFYLLVEYVHHDGRIGDFARTGLLYLTETASKSRYLEKWMIE-SDLATLMASGLGALYSRLSRRLpsgpl 276
                 ****999.6677788899*****************************************************.*********************966665 PP

  RAI16-like 192 .dpletiqssdwsi.dekistedlatfpgkeaLesFlslleFcqslikeahs.eiaeallklieesFLadvLePsLletse...gssltvlayLkrilr 284
                  d+l+ i + ++ +  +  +++d ++f   + +++F+ +l F+q++ +++ s e+ ++ll++++  FL+++L+PsLle+s+   gs+++v+ayL+ril+
  KKY20785.1 277 pDQLPVILTLSDFEiPSGEHEADPSEFH--HDMDAFMGYLMFWQDTLYHCASaEVTDTLLDHFQILFLQQLLYPSLLESSDidgGSTASVIAYLHRILD 373
                 5556888887775546666777777666..9*******************9989*****************************999************* PP

  RAI16-like 285 slespalleqvlsFLLgtetetetsrddedlplkttlierissksfelsistlrlfetllqlpdeniLynLvLr 358
                  +++p+l +++l++LL+t+t t        +     +++ +++ks++++++      +  ++pd ++L +L+  
  KKY20785.1 374 VVDHPELSRRILRYLLATQTGT--------QSKNPPRMSLSRRKSLDVLTA--LAKAEDNPSPDLFNLVDLIAM 437
                 ****************977662........233455678899999999999..66677889**********965 PP

>> Rcd1  Cell differentiation family, Rcd1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       0.6   5.3e+03     214     239 ..      27      54 ..      26      69 .. 0.63
   2 ?   12.2   0.1   9.3e-06     0.083      54     158 ..     352     448 ..     336     462 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.6
        Rcd1 214 rLsdnprareaLkkc..lpelLkdktfk 239
                 rL++ +r ++aL+++  +p++L+d+  +
  KKY20785.1  27 RLAAFKRTCNALQQVwrTPKSLRDDDTT 54 
                 6777888888888864458888876553 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 9.3e-06
        Rcd1  54 spptltaaesnrvcnaLallqcvashpetrklflkakiplyLypfLn.ttsksre.fEylRltsLgvigaLvktddkevikflldteivplclrimesG 150
                 +++ ++  ++  v+  L+ +  v++hpe      + +i  yL+   + t+sk+ + +   R  sL v+ aL+k++d+   + +   +++ +clr+    
  KKY20785.1 352 ESSDIDGGSTASVIAYLHRILDVVDHPEL-----SRRILRYLLATQTgTQSKNPPrMSLSRRKSLDVLTALAKAEDNPSPDLFNLVDLIAMCLRS---- 441
                 45556666777777777777777777775.....55666787777664666666525566*********************************96.... PP

        Rcd1 151 selsktvA 158
                  ++s+tvA
  KKY20785.1 442 -KQSRTVA 448
                 .4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (842 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.52
# Mc/sec: 4889.66
//
Query:       KKY20786.1  [L=340]
Description: putative adenosine deaminase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-56  191.4   0.0    2.9e-56  191.2   0.0    1.0  1  A_deaminase   Adenosine/AMP deaminase
  ------ inclusion threshold ------
      0.034   13.5   0.0      0.061   12.6   0.0    1.4  1  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.2   0.0   3.2e-60   2.9e-56       2     326 ..      12     327 ..      11     329 .. 0.97

  Alignments for each domain:
  == domain 1  score: 191.2 bits;  conditional E-value: 3.2e-60
                  S-EEEEEEECCCSS-HHHHHHHHHHHCHT..SS-SCCCCCCCCHCHCCHHHHCCHCCCHHCCCHHHTCCCCCCHHHHHHCCCCCHCTTCCCCCCCCSH CS
  A_deaminase   2 lpKvdlHvHldgclnpktllrlakkkgikeldekvveedeklltlqekfesLkeflydlsvdvlvlhwlievvrllavekakdlakdfvkylevifsP 99 
                  lpK++lHvHl+g+l+p+++ +la +++i       +++  +  t   +f++L +fl+ ++ +++vl  +  ++ +la+ + ++++ + vk++e++f+P
   KKY20786.1  12 LPKAELHVHLEGTLEPSLVRELATRNQIP------IPASLQTRTSGYDFHDLTSFLAVYYPNMSVLL-TSSDFHDLAYSYLTKAHSQNVKHVEMFFDP 102
                  8*************************988......99999999999*********************.****************************** PP

                  HHHHHH-GCSTCCHHHHCCCCCCCCCCHCCT-EEEEEECCETT.TCCGHCCCHHHHHHCCCCCCCCCCCCC-TTSTTGGGHHHHHCCCCHTT-EEEEE CS
  A_deaminase 100 lfeatagpqlpelevvlkvvdgfdsvedeskvkerlilvksrk.peewseeinelasyyrdytvvnldllndekiepaslflklraeagkstllltpH 196
                  + ++++g   p+ +++  +  ++ ++ +e+ +++ li++ +r   ++w+  +      y+d  + +++l++de+ +p+s+f +++a+a+ ++ llt+H
   KKY20786.1 103 QAHTSRG--VPFSTIITGYRSAILQASREFSISASLIMCFLRDlDPKWAMDTLMQSLPYKD-WIIGVGLDSDERNNPPSKFSSVFARARSEGYLLTMH 197
                  *******..****************************************************.999********************************* PP

                  ES..SSS-CHHHHHHHHCS--SCECE-GGGGGSHHHHHHHHHCT-EEEE-HHHHCCCSST-TTTT-CHHHHHHTT-EEEE--BSCCCCT-SHHHHHHH CS
  A_deaminase 197 aG..EagglehvveAllllkaerigHGvrlrkdpvLqyllalaqiplevcPlSNvalgafleyaenPlkeflerglnvslntDDPlqfgttLieeYai 292
                  +      ++eh+++Al ++ ++r++HG+++++d +L  l +++ i+l+ cP+SN       + + + + ++l++g++ ++ +DDP++f  +++e+   
   KKY20786.1 198 CDidQQNSIEHIRQALEDISVDRLDHGTNIVEDDRLITLARDKGIGLTCCPVSNSVV--TTDFKGKEISHLLKKGVRCTIASDDPAYFRAYMNENLLK 293
                  *6447899**********************************************988..88999999******************************* PP

                  HHHHHT--HHHHHHHHHHHHHCSSS-HHHHHHHC CS
  A_deaminase 293 aaqvfklseedlaelarNsvkqsflsadekkkll 326
                  + qv +l++++l el++N+   s++s+ ++  +l
   KKY20786.1 294 MLQVEGLGWKELVELQKNAFTISWISETKRDGFL 327
                  ****************************999887 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.9e-06     0.061     130     255 ..     176     286 ..     117     310 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.9e-06
                   HHHHHHHHHHHHHHHTTEEEEEE.TSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHCCEEEHCTCEEE.HHHHHHHHHHHHHHCEEHHHHHHHH CS
  Amidohydro_1 130 sdeelkealkeakkrdlpvaiHa.letkgevedaeaafgetiehgthlevaeslglldeiklilahgvhlt.pteaellkerlkeagvahcpfsnsi 224
                   +++  + ++  a+ ++  +++H+  ++++ +e++++a          +++             l hg+ +  ++ +++l+++ k++g++ cp sns+
    KKY20786.1 176 PPSKFSSVFARARSEGYLLTMHCdIDQQNSIEHIRQALE-----DISVDR-------------LDHGTNIVeDDRLITLARD-KGIGLTCCPVSNSV 253
                   556667778888888888999997666666666666666.....235566.............8899999966678888888.8************* PP

                   SEHHHH..HHHHHHHHTSCEEEEEECTTSSCCG CS
  Amidohydro_1 225 lrsgre..alrkaldeGvkvglgtDgaasgnsl 255
                   ++++     +  +l++Gv++++++D+ a  ++ 
    KKY20786.1 254 VTTDFKgkEISHLLKKGVRCTIASDDPAYFRAY 286
                   9999962258889999*********98554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2179.07
//
Query:       KKY20787.1  [L=982]
Description: putative 2og-fe oxygenase superfamily protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-25   89.4   0.0    5.4e-25   88.4   0.0    1.5  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    1.4e-20   73.6   0.0    3.7e-20   72.3   0.0    1.6  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
    1.6e-14   53.6   0.5    2.8e-14   52.8   0.5    1.3  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.0     9e-29   5.4e-25       1     105 [.      40     147 ..      40     158 .. 0.89

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 9e-29
      DIOX_N   1 iPvidlsplsdd.edraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKekl..akspsfrGysrlgeektdg.kkldwkesfdl 95 
                 iPvid++ +  d e+r+++a+ +++A++++Gffy++nhg+++++i+ ++++a+ FF++P++eKek+   ks+ f G+s+  + + ++ + ld++e+f +
  KKY20787.1  40 IPVIDIAGIYGDfEARKELAKCIKHAAETTGFFYIKNHGIDDKVIQSALDQAKIFFHQPDSEKEKVskNKSKYFNGWSQRRSGHISPtESLDYREGFGW 138
                 9********6666*****************************************************64444699******999999999********** PP

      DIOX_N  96 gtelpeddpa 105
                  +  p+ dp+
  KKY20787.1 139 RYA-PQYDPD 147
                 999.655552 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0   6.3e-24   3.7e-20       6      99 ..     223     320 ..     221     321 .. 0.92

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 6.3e-24
                   EEEEE-S------....---EEEEEESSSEEEEEEE-TT---EE.EETEEEE----TTEEEEEE-HHHHHHTTS-S----EEE-.---GTGSEEEEE CS
  2OG-FeII_Oxy   6 vlnyypphpdpev....ilglgahtdaslltillqddvgglevf.kdgkwlrvppvdnslivniGdallflsngryksvlHrVl.pvnegerRvsia 96 
                   v nyyp  ++ ev    + glg htd +++t+l qd +ggl+v+ kdg+w++ +p +++++vniGd l+ lsn r+ks+ HrV  ++++  +R+s+ 
    KKY20787.1 223 VFNYYPKMTEAEVaaseDVGLGSHTDLQCFTLLWQDMIGGLQVLnKDGQWIKATPIEGTIVVNIGDYLMRLSNDRFKSTVHRVYnRSTV--DRYSMP 317
                   579999999999889999*************************956677**********************************944444..6***** PP

                   EEE CS
  2OG-FeII_Oxy  97 yfi 99 
                   +f+
    KKY20787.1 318 FFF 320
                   *97 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.5   4.7e-18   2.8e-14      30     177 ..     545     680 ..     527     698 .. 0.84

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 4.7e-18
  Fungal_trans  30 sksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektssdralherhhgvavrlars 126
                   s++a+a ++l+la+la G ++s+   +e +  +++ +  +   +lr   ++      ps   ++lq+Llll+  +++ +   +++ ++g+++rla+s
    KKY20787.1 545 SDKAIAWTALILAVLANGVQLSDLSLAERSRLSRDYA-RKSFHCLRLVNFL----MRPS--EEVLQALLLLAQILQNDQQAFSAWSLLGTTIRLAQS 634
                   5567778899999999999999999999866666644.3344555665555....4444..48********************************** PP

  Fungal_trans 127 lgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrpp.lld 177
                   lgL  ++ ++      ++++    + r+lw a+F+ D++++l+lGrpp  l+
    KKY20787.1 635 LGLDIRQRNEH-----ERDIL-VPRYRKLWRAVFWQDTILSLCLGRPPsALY 680
                   *******9999.....59999.**************************6444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (982 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 6648.18
//
Query:       KKY20788.1  [L=553]
Description: putative uridine permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.3e-107  359.5  44.7   2.6e-107  359.3  44.7    1.0  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  359.3  44.7  1.5e-111  2.6e-107       5     440 .]      34     482 ..      30     482 .. 0.98

  Alignments for each domain:
  == domain 1  score: 359.3 bits;  conditional E-value: 1.5e-111
  Transp_cyt_pur   5 eeRtwktlnlfsiWlganlnintwvigalglalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvviaiv 99 
                     + Rtw+++ +f++W++a+  +++w  +++g algL++w+s+++ + g++++a++++++g+ Ga y++ fpi+ Ra fG++g+++p ++r+v+aiv
      KKY20788.1  34 KDRTWTAVTYFTFWFSAAATVSNWYGSSTGQALGLSMWESLVCSLGGQILIAVIITVNGRPGATYHVGFPIINRAAFGVFGAWWPTFNRAVMAIV 128
                     78********************************************************************************************* PP

  Transp_cyt_pur 100 wfgvqawiGsealllmlgkifgkwleigg...ailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaeg.Gpv 190
                     w+gv+a+ G++++++ml  if++  +i++     ++++  ++++ffifw v+  +++ +v+k+r++  ++++++ v a+++l w+++ka+g Gpv
      KKY20788.1 129 WNGVNAVQGGQCVYVMLHAIFPSIARIPNtmgSGSALTSGGMIGFFIFWFVTCFFLVIPVPKMRVLVYAKLVVFIVSAIAMLGWTVGKAGGlGPV 223
                     ****************************9876778888999****************************************************** PP

  Transp_cyt_pur 191 ldkavklgkse...lflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakfdet. 281
                     + +++ ++ se   l+++  ++ +a+ at++ na+DF ryak++   v + l+++pl++++++l+g lv a +++++g+ +w+p+d+l +     
      KKY20788.1 224 ARQGSTVHGSEkawLIIRFFMLGAANCATFASNAADFQRYAKKPFDVVPGNLIGFPLANFVVSLVGNLVCASSQIIFGELIWNPVDFLDQLQTQd 318
                     ********8889*9999***********************************************************************9998889 PP

  Transp_cyt_pur 282 ......agvllililvalaqlgvnisanllsagldlaallPkkinikrgsliaavialvivpwkllssssklftaflsllavflspvagviiady 370
                           ag +li++ +a + +   i+ n+l+ag+d+aal+Pk+++++ g +i+a+++ +i pw ll+s+s  f++f+s + +fls+++gv+++ y
      KKY20788.1 319 ytaanrAGCFLIAFCFAYSAIFSSIFENSLPAGNDIAALFPKYLTVRKGFFICAIVSFAINPWYLLGSASI-FVSFMSSYQIFLSSITGVLLVNY 412
                     99*********************************************************************.*********************** PP

  Transp_cyt_pur 371 fvvrrgylklaalytrrrgsaYwyrkgvNwravaayivGiaaglvgvagsvgikvvkgaeklfdlsylvG 440
                     + + rgyl++ +l+t+++++ Y+y+ g+N ra +ay++G+++++ g+  ++g++ + g+++ ++ +y+vG
      KKY20788.1 413 YLIARGYLQMPDLFTSSKTGVYYYTHGWNIRAYIAYVLGVIPNFYGFLNNMGVSAPIGVTRFYYFAYWVG 482
                     *********************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3644.02
//
Query:       KKY20789.1  [L=1176]
Description: putative vacuolar transporter chaperone [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.4e-100  334.6   0.4   8.7e-100  333.6   0.4    1.5  1  VTC              VTC domain
    1.7e-41  142.4   0.0    2.7e-41  141.8   0.0    1.3  1  Aminotran_5      Aminotransferase class-V
    1.4e-12   47.9   3.4    1.4e-12   47.9   3.4    2.3  2  DUF202           Domain of unknown function (DUF202)
    1.9e-12   47.8  16.0      2e-06   28.0   0.1    4.1  4  SPX              SPX domain
    5.5e-05   21.9   0.0    9.4e-05   21.1   0.0    1.3  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> VTC  VTC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.6   0.4  2.4e-103  8.7e-100       1     275 []     205     478 ..     205     478 .. 0.98

  Alignments for each domain:
  == domain 1  score: 333.6 bits;  conditional E-value: 2.4e-103
                 --EEEEEEE-HHHHHHHHHHHHTTS-B----------------------EEEEEEE-TT.-HHHHHHHHT-TT--EEEEEEES-GGG--EEEEEEEE-- CS
         VTC   1 nrnetKywvhsdnvvevktlilkhlpvlvygaseeeiaaallrksadqtitsvYfDnnd.felyenrilkmegaekiRlRwygkldnedvflErktkhe 98 
                 +r++tKywvh+dn++e+k  ilkhlpvlv++ ++e        +++d++i+s+Y+Dn++  ely  r++k+egae iRlRwyg +++e+++lErkt++e
  KKY20789.1 205 VRQTTKYWVHKDNITELKLIILKHLPVLVFNPNKEF-------EEKDSAISSIYYDNPEtWELYMGRLKKTEGAEAIRLRWYGGMESEKIYLERKTHRE 296
                 69*****************************99999.......89************9758************************************** PP

                 ------EEEEEEEE-GGGHHHHH---HHHHHHHHHHHHHT-..HHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEEEE--TT--SEEEEEEEEEEEEE CS
         VTC  99 swtgesstkerftlkqkfvksyllgrlpaeerleklkkkee..ekevekleqlaeeiqntilrnslqPvvrtsYlRaaFqlstdnavRitiDtnlcmvr 195
                 +wtge+s k+rf+lk+k+v+++l g++++e+++ek++k+++  eke++ leqla+eiq+ + +++l Pv+r  Y+R+aFql++d +vRi++Dt+l+mvr
  KKY20789.1 297 DWTGEKSVKARFELKEKNVNAFLAGKMTVEQAFEKMRKDGKkgEKEIADLEQLAREIQYRVITRKLVPVTRSFYHRTAFQLPGDARVRISLDTELTMVR 395
                 ****************************************9999******************************************************* PP

                 ----SSSS-SS-TSS-SSTTSS-TTTT--GGGEEE--SEEEEEEE--...----HHHHHHHTSTT-EE-TT--HHHHHHHHHH CS
         VTC 196 edsfeerrkledtwerldedvqqpvkllrkgevvrfpyavlEvKlqt...skspewiqeLlashlvievpkfSKYqhgvaslh 275
                 ed+++ r+++ ++w+r+d++v++p++ l +++v rfpyavlEvKlqt   ++ p+wi++L+ashlv++vpkfSK++hg+a+++
  KKY20789.1 396 EDNLDGRDRTGKNWRRMDIGVDYPFSQLPPEDVERFPYAVLEVKLQTqagQEPPQWIRDLTASHLVEAVPKFSKFIHGTATMF 478
                 *************************************************99*****************************986 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.8   0.0   7.6e-45   2.7e-41      20     369 ..     797    1160 ..     794    1162 .. 0.83

  Alignments for each domain:
  == domain 1  score: 141.8 bits;  conditional E-value: 7.6e-45
                   HHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEE CS
  Aminotran_5   20 qeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgak 115 
                   q+y+t  n+  h + + ++k+ ++ +e+  +  a  ina+  +ei+   + t+ +     +l+++l++gdei++++++h an+  w  +a+++ ++
   KKY20789.1  797 QDYLT-NNNVQHGGSYYMSKKCMDVYEDGYNAAASYINASR-SEIVLGASVTQLFRNLSVALGPQLQAGDEIIISSLDHEANIASWLLMADQKPIT 890 
                   55655.3444456999************************7.***********99999************************************** PP

                   EEEEEBET..TSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHT.T-EEEEE-TTTTTTS---HHHHTESEEEEETTTTTSSTT- CS
  Aminotran_5  116 vkviplde..egeldldelekllnektklvaithvsnvtGtiqpveeigklakkk.galvlvDaaqavghipidvkklgvDflafsghKllgPtGi 208 
                   vk+++ ++  +  l++++l+ l+++ktklv+ th+sn +Gti +v++i+k+++++ ga ++vDa++ ++h+p+dvk+l+vDf+afs  K++gP  i
   KKY20789.1  891 VKWWTGTPgpDPILRPEDLKLLMSPKTKLVTCTHTSNLLGTITDVKAIAKVVHEVpGAKLCVDAVAFAPHRPVDVKDLEVDFYAFSWYKVFGPH-I 985 
                   ****76651166788***************************************77*************************************9.* PP

                   EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHH.HHHHHHHHHHHHHHHHCT....STTEEE CS
  Aminotran_5  209 GvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyleeiglea.iekhekelaeyllerlks....lpgvrl 299 
                   +vly+++     ++p+l++ + + ++     t+++  s   aGT n      l a+  yl++ g+ + + +he++l+ +ll+ l        ++++
   KKY20789.1  986 SVLYAST----PVHPTLTSLSHFFKPHP--QTLETMLS--LAGT-NYELTSTLPAVTTYLQQPGFWTwSVRHEETLQTMLLDYLTHtskfHSSIQI 1072
                   *******....55555555553444444..44333333..4666.678889999999999888886525688899999999999882222346788 PP

                   ES...-B-CTCBSEEEEEETTCSHHHHHHHHHHT.TE.EEEEE-TTTHHHHHHTT.S..............-EEEEE--TTS-HHHHH CS
  Aminotran_5  300 yg..pdkaerrasivsfnfkgvhaedvatlLdee.gI.avrsGhhcaqplmkrlale..............gtvRaSlyiynteeevd 369 
                   yg  + +   r  +++ +++g+++++++  ++++ g    + Gh+ +  l++rl  +              g vR+Sl++ynt  ev+
   KKY20789.1 1073 YGspTPDSSIRVPVICWTVRGIKSKQLVEEIQSKtGTyGFKWGHNYSYRLVERLFKAaaadgndeardtedGLVRVSLCHYNTVGEVQ 1160
                   99543455667899999*******999888888776515555*****655555544457889**********************9998 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   3.4   3.9e-16   1.4e-12       1      66 [.     692     752 ..     692     754 .. 0.94
   2 ?   -0.8   0.1      0.58   2.1e+03      13      32 ..     769     788 ..     768     882 .. 0.66

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 3.9e-16
      DUF202   1 rdglAnERTfLaWlRtslalialglallrffltgepsalgkilglilivlgiltllvglvrylrrq 66 
                 ++++A+ERTfL+W+ +s+ l++++++ll+f   g++++   i ++++ ++++l+ll+++  yl r+
  KKY20789.1 692 KVYFAAERTFLSWMEFSIILGSIAATLLNF---GDQAS--LISAWGFTIVATLALLYSVGIYLVRV 752
                 689**************************9...88888..8*********************9987 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.58
      DUF202  13 WlRtslalialglallrffl 32 
                 W  t+l l+ l+++ ++f  
  KKY20789.1 769 WGPTLLCLMLLAAVAINFAF 788
                 66677777777777777632 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.4   0.00048       1.7       1      30 [.       1      30 [.       1      36 [. 0.96
   2 !   17.8   1.6     7e-07    0.0025     181     228 ..      46      98 ..      31     110 .. 0.78
   3 !   28.0   0.1   5.7e-10     2e-06     349     381 ..     125     157 ..     122     160 .. 0.91
   4 ?    1.9   0.2     0.047   1.7e+02      64     130 ..     511     577 ..     488     706 .. 0.47

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00048
         SPX  1 MKFakeLeenlvpEWrdaYldYkqLKKlIk 30
                MKF+++L  +l+     +Y+ Y+ LK  +k
  KKY20789.1  1 MKFGQQLRTSLIKDYYWHYIAYDDLKDALK 30
                **************************9998 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 7e-07
         SPX 181 r.....aekeFferLdseLnkvetFykakeeefterlesLrkqlealrprrik 228
                 r      ek+F+++L  eL+kv +F++ k ee  +r+ + +k++++++ ++ +
  KKY20789.1  46 RkwsedDEKAFIAQLEGELDKVFSFQRLKSEEIIRRIRASEKEVHQVIRQAEE 98 
                 24444599***************************************554444 PP

  == domain 3  score: 28.0 bits;  conditional E-value: 5.7e-10
         SPX 349 lLKsYqeLNrtAFrKIlKKfDKvtaltaskrym 381
                 +L +Y  LN t+F KI KK+DK+t  +++ ++ 
  KKY20789.1 125 DLAKYTQLNYTGFQKIIKKHDKQTDWHLKPSFA 157
                 799**********************99999886 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.047
         SPX  64 tepstsaaadesgnsaadasssepkdeaeslprrsplsrssrssssygglvssppsansssssddss 130
                 t+ps s+++d+  + ++ ++++e ++   ++++++  ++++++ +   ++  +  +++++ ++dd +
  KKY20789.1 511 TAPSVSTSDDPMDTDSEREDNDENETVTGQTTPKNFIEDEGQRRLRDAQQAIDTYERDRTREDDDTE 577
                 3333333333333333333333333333222222222222222222222222222222222222222 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.6e-08   9.4e-05      89     207 ..     861     988 ..     852    1057 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.6e-08
                      -TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEEST.......TSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT.-EEEEEG CS
  Cys_Met_Meta_PP  89 kaGdeivvsddlYggtqrllkkvlkklgievkfvdt.......sdleelekaikentklvylEtptnpllkvvDiekiaklakkag.vlvvvDn 174
                      +aGdei++s+  ++   +    ++ +  i+vk+            +e+l+  ++++tklv     +n l  ++D+++iak+++++  + ++vD+
       KKY20789.1 861 QAGDEIIISSLDHEANIASWLLMADQKPITVKWWTGtpgpdpiLRPEDLKLLMSPKTKLVTCTHTSNLLGTITDVKAIAKVVHEVPgAKLCVDA 954
                      556666666666666555555555555566655544333433467899*************************************66******* PP

                      TTTHT.TTS-GGGGT-SEEEEETTTTTTCSSS-- CS
  Cys_Met_Meta_PP 175 tfasp.llqrplklgaDivvhSaTKylgGhsdvv 207
                      +  +p   +   +l++D    S  K  g h  v+
       KKY20789.1 955 VAFAPhRPVDVKDLEVDFYAFSWYKVFGPHISVL 988
                      *999933344445667777666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.52
# Mc/sec: 6829.85
//
Query:       KKY20790.1  [L=506]
Description: putative oligosaccharyl transferase subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.7e-147  492.2   0.1   1.9e-147  492.0   0.1    1.0  1  Ribophorin_I  Ribophorin I


Domain annotation for each model (and alignments):
>> Ribophorin_I  Ribophorin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  492.0   0.1  1.1e-151  1.9e-147       2     440 ..      45     494 ..      44     495 .. 0.95

  Alignments for each domain:
  == domain 1  score: 492.0 bits;  conditional E-value: 1.1e-151
                   EEEEEEEEEE-SSSS-EEEEEEEEE--SSS----EEEEE-TTTTTSEEEEEEE-SS..S........EE-------------.--EEEEEE-SS--- CS
  Ribophorin_I   2 enenvertidlkksyvketikitvkntgsepvseyylalpkeeaeklslleaslkdkkkkkktk.kveaelkdtskeedles.dvqvyevkLpkple 96 
                   +  n++r+++l+k yv+eti+++v+n++++p+seyy++++  ++ +++ +e+  +dkk++ k+k +v+    ++  +e ++s  +q+y v++p+ple
    KKY20790.1  45 KHINLVRNTNLEKGYVRETINVVVENVDKQPQSEYYFPFEYAVMGRVGGFEV--RDKKDSAKGKfQVTPAGLEAVLDEGVSSkPTQYYVVHFPQPLE 139
                   6789************************************************..889998899977765555554566666669************* PP

                   SS-EEEEEEEEEES---EESSSB--TTS-EEEEEEEESS---SS-E.CE-EEEEESSS-EEESS.........CCC-ETTEEEE---E..EE-SS-- CS
  Ribophorin_I  97 pgekvtlevsyvlthalrPlPaeikqaekQlllfktsayvlspYktkkqktkvklpsskiesytkle......epeksgstltyGpfe..nvapfsl 185
                   +++++tl++sy ++ +l PlPa+ikq++kQ+l++++sayv+s Y+t kqktkvk+p+++i++ytk++      +pe++gst+tyG ++  +++ +++
    KKY20790.1 140 SKSQLTLTISYNVLGSLAPLPASIKQDDKQYLTYDFSAYVPSVYPTLKQKTKVKFPTTDIPEYTKTSglksssDPEQQGSTFTYGEYDtsKLPLGTK 236
                   ******************************************************************9**99888888**********7668899999 PP

                   S-EEEEEEE-S--EEEEEEEEEEEEETTTTEEEEEEEEEEEE-S-B-TT---HHHHHH.HHHCS.--SS-SSBS-EEEE--SS----EEE-SSSB-- CS
  Ribophorin_I 186 spvsvhyennkplltveklerdievShwggniaveeeyelrNdGAklkgsFsRldyqkseyeknksnkpssalksleaklpagakdvyytDeiGnvs 282
                    pvsv+ye++kp+l ++ lerd evShwggn+a+ee+y+lrNdGA+l+++F+R+ +++++y     n p++al++l+++l++g++d+y+tD+iGnvs
    KKY20790.1 237 YPVSVRYEFTKPILACTLLERDLEVSHWGGNLATEERYWLRNDGANLTNHFNRVSWASQSYF----NAPTTALRELKYPLRPGSVDPYFTDDIGNVS 329
                   99*******************************************************99998....788**************************** PP

                   -EEEETT...E...EEE--SS-B-TT-EEEEEEEEEEEGGGTEEE-T.TTEEEEEEES--...--SSEEECEEEEEEEE-TT-EEEEEE-SS--... CS
  Ribophorin_I 283 tsrlrenekkketelelkPRfPlfGGWkysFtigynlplseflrkek.gdkyvlkvplle...sikdvvveevelriiLPegAenvkvsspfpv... 372
                   tsr+r+n+ + e++lelkPR+PlfGGWkysF+ig+n+ ls +lrk k g++yvl+vplle   ++++v++e+ve+r+iLPegA+nvk +        
    KKY20790.1 330 TSRYRPNRIR-EASLELKPRYPLFGGWKYSFRIGWNNALSGYLRKLKtGNTYVLSVPLLEgpkMPEGVQYERVEVRVILPEGATNVKWEATGGSglp 425
                   *******767.8************************************************99999**********************8888555888 PP

                   .SEEEEEEE--TT--S-EEEEEEEE-SEETTTS--EEEEEEE--HHHHTCHHHHHHHHHHHHHHHHHHC CS
  Ribophorin_I 373 .essevslhktyLDttgRpvvtlkkknlvdeeheqkvlvkYdypklallrkpllialavfllfllaivl 440
                     +++++ +kt++Dt gRp ++l ++n+ d+ +++ ++++Ydy+++a+lrkp++i+++v+ +f++a++l
    KKY20790.1 426 dLEASETSQKTFMDTLGRPSLKLVAHNVGDDLRDSALTITYDYTTVAALRKPFTIFAGVVSVFIVAWAL 494
                   899999************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3770.37
//
Query:       KKY20791.1  [L=305]
Description: putative nadh-ubiquinone oxidoreductase subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-60  203.5   0.0    1.6e-60  203.2   0.0    1.1  1  2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
  ------ inclusion threshold ------
       0.11   12.3   0.1       0.17   11.7   0.1    1.2  1  POT1             Telomeric single stranded DNA binding POT1/C


Domain annotation for each model (and alignments):
>> 2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.2   0.0   1.8e-64   1.6e-60       1     144 [.      64     211 ..      64     212 .. 0.97

  Alignments for each domain:
  == domain 1  score: 203.2 bits;  conditional E-value: 1.8e-64
                      HHHHHTTS-..-GGGGHHHHHHHHHHHHSS--HHHHHHHHHHHTS-HHHHHHHHTTSSSS-SS---SEEEEEE-SHHHHTT..THHHHHHHHHH CS
  2Fe-2S_thioredx   1 ikeiiakyp..ekrsaliplLklvQeeegwlpeealeevaellgvppaevyevatFYsmfnlkpvgkyviqvCtttpCalr..gseeilealek 90 
                      i+ei+++yp  +k++a++plL+l Q+++gw + ++++eva+ll++pp++vyevatFY+m+n++pvgk+ +qvCtttpC+l   gs++i++a+e+
       KKY20791.1  64 IQEIVKRYPpqYKKAAVMPLLDLGQRQHGWTSISVMNEVARLLEMPPMRVYEVATFYTMYNRSPVGKFFVQVCTTTPCMLGgcGSDKIMKAIED 157
                      689****************************************************************************954489********* PP

                      HHT--TT-B-TTSSEEEEEES--S-GGGSSEEEESSSSEEES-HHHHHHHHHHH CS
  2Fe-2S_thioredx  91 klgikagettadgkftleeveClGaCanaPvvqindevyedltpekveeilekl 144
                      +lgi+ g+tt+dg ftl eveClGaC+naP++qind++yedltpe++  +l +l
       KKY20791.1 158 HLGIHSGQTTEDGIFTLLEVECLGACVNAPMIQINDDYYEDLTPESTVTLLTAL 211
                      **************************************************9987 PP

>> POT1  Telomeric single stranded DNA binding POT1/CDC13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   1.9e-05      0.17      89     141 ..      19      70 ..      10      72 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.9e-05
                 SCECCSEEEEEEECCCTTSCEEEEECCCCCSTSTTCCCCSHCCHHHHHHHHHH CS
        POT1  89 epqglanigfssswalFngnlnailletppilsskffelskeekkylkdlrkw 141
                 +++ l++  fsss a F+++l+ + ++tp+++ s  f++ ++++k+++++ k+
  KKY20791.1  19 RRFILTTRSFSSSPAAFSDVLH-VHRNTPDNNPSVAFKFNEQNQKLIQEIVKR 70 
                 5667788899999*********.9*************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2129.60
//
Query:       KKY20792.1  [L=384]
Description: putative heterokaryon incompatibility [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 2298.69
//
Query:       KKY20793.1  [L=591]
Description: putative actin-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-35  118.8   0.0    1.2e-34  118.0   0.0    1.5  1  DUF1899      Domain of unknown function (DUF1899)
    4.8e-20   71.2   0.2      9e-20   70.3   0.2    1.5  1  WD40_4       Type of WD40 repeat
    3.5e-17   62.5   4.9    0.00044   21.0   0.1    5.0  5  WD40         WD domain, G-beta repeat
    2.6e-05   24.4   0.0     0.0078   16.5   0.0    3.4  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.084   11.5   0.2       0.44    9.1   0.1    1.9  2  Nup160       Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> DUF1899  Domain of unknown function (DUF1899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.0   3.3e-38   1.2e-34       1      66 []       4      69 ..       4      69 .. 0.99

  Alignments for each domain:
  == domain 1  score: 118.0 bits;  conditional E-value: 3.3e-38
     DUF1899  1 rfvrsSkfRhvfgkpakkeecydnirvsknawdsnlikaNpkflAvnwessGGGafaVlplnktGk 66
                rfvrsSk+Rhvfg p++k++cydn+rvsknawd+nl+kaNp++lAvnw+++GGGafaV+pln++G+
  KKY20793.1  4 RFVRSSKYRHVFGRPTRKDQCYDNLRVSKNAWDTNLVKANPEYLAVNWDAGGGGAFAVVPLNERGR 69
                79***************************************************************8 PP

>> WD40_4  Type of WD40 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.2   2.5e-23     9e-20       1      44 []     349     391 ..     349     391 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 2.5e-23
      WD40_4   1 iepisftVPRkskeeFqdDlyPdtagtepaltAeeWlsGknkep 44 
                 iepisf+VPR++ e+Fq+D+yP+t g +pa+++ eW++Gk++ p
  KKY20793.1 349 IEPISFIVPRRA-ESFQEDIYPPTVGLKPAMSSGEWFDGKEAMP 391
                 8***********.***************************9976 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1     3e-06     0.011       7      37 ..      77     109 ..      72     110 .. 0.83
   2 !   20.3   0.0     2e-07   0.00071       2      38 .]     129     167 ..     128     167 .. 0.87
   3 !   21.0   0.1   1.2e-07   0.00044      13      38 .]     183     208 ..     172     208 .. 0.90
   4 ?    0.3   0.0      0.41   1.5e+03      18      38 .]     231     255 ..     213     255 .. 0.63
   5 ?    1.5   0.0      0.18   6.6e+02      13      36 ..     272     299 ..     261     301 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3e-06
                 EESS.SSEEEEEEETTSSEE.EEEETTSEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawl.asGsdDgtvriW 37 
                 ++GH   v + +++p ++ l asG++Dg++ +W
  KKY20793.1  77 FRGHtATVLDTDWNPFNDALiASGGYDGKILLW 109
                 89**766999998888888626999******** PP

  == domain 2  score: 20.3 bits;  conditional E-value: 2e-07
                 EEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 
                 +++++l+GH + v ++ f+p    ++ s+s D t+++Wd
  KKY20793.1 129 NPVGKLSGHpKQVGHVLFNPAAENVVaSASGDFTIKLWD 167
                 68999****999************8625566*******9 PP

  == domain 3  score: 21.0 bits;  conditional E-value: 1.2e-07
                 EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriWd 38 
                 v sl ++p+g++l++ s+D+++r+Wd
  KKY20793.1 183 VQSLTWNPSGSLLVTTSRDKKLRLWD 208
                 699**********************9 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.41
                 EETTSSEEE.EE.ET..TSEEEEEE CS
        WD40  18 fspdgawla.sG.sd..DgtvriWd 38 
                 +  +++ +a +G s+  D+ + +Wd
  KKY20793.1 231 WLGEHDRVAtTGfSKmsDRQLALWD 255
                 45555566635663244*******9 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.18
                 EEEEE...EETTSSEE.EEE.ETTSEEEE CS
        WD40  13 vtsla...fspdgawl.asG.sdDgtvri 36 
                 +++++   +++  + l ++G + Dg++r 
  KKY20793.1 272 ISGVCmpfWDDGTQCLyLAGkG-DGNIRY 299
                 6666677556666665337988.****96 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.021        76       3      72 ..      89     173 ..      87     181 .. 0.72
   2 !   16.5   0.0   2.2e-06    0.0078      36      80 ..     178     222 ..     164     234 .. 0.83
   3 ?   -0.4   0.0       0.4   1.4e+03      55      80 ..     290     315 ..     276     326 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.021
  ANAPC4_WD40   3 wcptmD.LiAlatedgellvfRlngqrvwtl.............eedkedsevrsLaWkpd.gklLavaysdgevrlldaesgkv 72 
                  w+p +D LiA +  dg++l+ R+  +   ++             + +++ ++v ++ ++p  +++ a a  d +++l d+e g  
   KKY20793.1  89 WNPFNDaLIASGGYDGKILLWRVPDEFTLKVenpedikdvnpvgKLSGHPKQVGHVLFNPAaENVVASASGDFTIKLWDIEAGSS 173
                  8887777888899999999999877666666555555555666656777788888888875378888888999999999988865 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 2.2e-06
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  k +  v+sL W+p+g+lL+    d ++rl d+ +++  ++++ ++
   KKY20793.1 178 KVGDVVQSLTWNPSGSLLVTTSRDKKLRLWDVRQERPAQEVNGHA 222
                  557789***************************999988887665 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.4
  ANAPC4_WD40  55 vaysdgevrlldaesgkvvhslsvks 80 
                   +  dg++r ++ e+ k    +++ks
   KKY20793.1 290 AGKGDGNIRYYEYENDKFQYLSEYKS 315
                  57789*********999876666555 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0     0.072   2.6e+02     229     251 ..     150     172 ..     141     191 .. 0.74
   2 ?    9.1   0.1   0.00012      0.44     230     257 ..     192     219 ..     170     254 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.072
                 TTTEEEEEETT-EEEEEETTTTE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgk 251
                 ++++++++s d ++++W+++ g+
  KKY20793.1 150 AENVVASASGDFTIKLWDIEAGS 172
                 56788888888888888877654 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00012
                 TTEEEEEETT-EEEEEETTTTEEEEEEE CS
      Nup160 230 qtylfalsrdgkLrvWnlltgkclatid 257
                  ++l++ srd+kLr+W+++  +++   +
  KKY20793.1 192 GSLLVTTSRDKKLRLWDVRQERPAQEVN 219
                 57899**************999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 3567.36
//
Query:       KKY20794.1  [L=603]
Description: putative ctp synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.6e-122  406.8   0.1   4.9e-122  406.3   0.1    1.2  1  CTP_synth_N    CTP synthase N-terminus
    1.4e-53  181.5   0.0    2.2e-53  180.9   0.0    1.3  1  GATase         Glutamine amidotransferase class-I
    2.3e-05   24.3   0.1    0.00021   21.1   0.1    2.3  1  Peptidase_C26  Peptidase C26
  ------ inclusion threshold ------
       0.16   11.6   0.0       0.28   10.8   0.0    1.2  1  DUF2961        Protein of unknown function (DUF2961)


Domain annotation for each model (and alignments):
>> CTP_synth_N  CTP synthase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  406.3   0.1  1.1e-125  4.9e-122       1     265 []       2     273 ..       2     273 .. 0.97

  Alignments for each domain:
  == domain 1  score: 406.3 bits;  conditional E-value: 1.1e-125
                  EEEEEEE--STTTTHHHHHHHHHHHHHCTT--...EEEEEEE-SSSSSSTT--CCCC--EEE-TT--EEETHHHHHHHHHT----GGGEEEHHHHHHH CS
  CTP_synth_N   1 kyilvtGGvvSglGkGiiaaslgallksrglk...vtlikiDPYlnvdagtlsplehGEvfvlddGaetDlDlGnYeRfldikltkennittGkiyks 95 
                  ky+lv+GGv+Sg+GkG+ia+s+g llk+ glk   v++ik+DPY+nvdagt+ p+ehGE+fvlddG+e+DlDlGnYeR+l+i+lt+ennittGkiy++
   KKY20794.1   2 KYVLVSGGVISGIGKGVIASSTGLLLKTIGLKishVSSIKVDPYMNVDAGTMAPTEHGECFVLDDGGEVDLDLGNYERYLNITLTRENNITTGKIYQH 99 
                  8*****************************98555778************************************************************ PP

                  HHHHHHTTTTTT----CCCHHHHHHHHHHHHHH.H.C.....T-SEEEEEE-S-TTSGGGHHHHHHHHHHHHHH-TTTEEEEEEEE--B-TTTSSB-H CS
  CTP_synth_N  96 viekerrGdylGktvqviphvtdeikeriekvakk.v.....eadvviveigGtvgdieslpfleairqlklelgkenvllihvtlvpvlkaagelkt 187
                  vie+errGdylG+tvqv+ph+t++i+++ie+vak+ v     e+dv+i+e+gGtvgdies+pf+ea+rql+ ++g++n+l+ihv+lvpv++  ge+kt
   KKY20794.1 100 VIERERRGDYLGQTVQVVPHLTNAIQDWIERVAKIpVddtneEPDVCIIELGGTVGDIESAPFIEAMRQLRRRAGRDNFLQIHVSLVPVVS--GEQKT 195
                  *********************************9966888766**********************************************95..***** PP

                  HHHHHHHHHHHHHT---SEEEEEESS---HHHHHHHHHHCT--GGGEEEEE--S-GGGHHHHHHHCTHHHHHHHHTT- CS
  CTP_synth_N 188 kptqhsvkelrslGiqpdiivcrsekeleeevkekialfcnvekeavisvkdvesiyevpllleeqglaelileklkl 265
                  kptq++++++rs+G+ pd+i+cr++++l++++ +k+a+fc+ve ++vi+v+dv+s+y+vpllle+qgl  ++ + l+l
   KKY20794.1 196 KPTQQAIRDVRSTGLAPDLIACRCQQPLNDATISKVAMFCQVEPRQVIAVHDVSSTYHVPLLLEKQGLIPVLSDLLRL 273
                  *********************************************************************999998875 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.9   0.0   4.9e-57   2.2e-53       3     189 ..     321     558 ..     319     559 .. 0.94

  Alignments for each domain:
  == domain 1  score: 180.9 bits;  conditional E-value: 4.9e-57
                 EESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHH.............HHTHHSTSEEEEEEESSCTTTTTHHHHHHHHCTSTS-EEEETHHHHHHHHHT CS
      GATase   3 iDnydsvtenlvhalvelgvkvevvpidasaeei.............lellknpdgilvsgGpgspgvegkieaikearenkiPiLGICLGmQllaief 88 
                  D+y sv+++l+h+++ +g k+e++++das++e+             +++ +++dg+lv+gG+gs+g eg+i+a+++ar++ +P+LGIC+GmQl++ie+
  KKY20794.1 321 HDSYLSVIKSLEHSAMTCGRKLELLWVDASNLEKetmaqspeayhkaWHEVCTADGVLVPGGFGSRGSEGMIAAANWARTKPKPYLGICFGMQLAVIEY 419
                 69****************************99999*******987766679************************************************ PP

                 TTEEE......................EEECEEEEEEEEEEEETTT...........CGGTTTT.SEEEEEEEEEEEEESG...CHHHTTEEEEEEEET CS
      GATase  89 grkvv......................kekekehhggtmrlgddet...........allyglk.nevierhrHryevnpk...elepaglevtaksed 150
                 +r+v                       +e +k  +gg+mrlg + t           ++lyg + + v+erhrHryevnp+   +l +agl +++k+++
  KKY20794.1 420 ARSVCgienaasfelnaqtpeplvvfmPEIDKATMGGNMRLGLRAThfqpdsswsklRKLYGADlEAVHERHRHRYEVNPAyidRLTEAGLNFIGKDDK 518
                 **888888888999999999999999*9999************999***********77777543889***************999***********77 PP

                 TEEEEEEEEETT.T.EEEESSBTTSTTSTTHHHHHHHHHHH CS
      GATase 151 deelmeiiekkn.p.fvgvQFHPEststpegpellfnflik 189
                 + e+mei+e+k+ p f+gvQ+HPE+ s+  +p+++  ++++
  KKY20794.1 519 G-ERMEIVELKDhPfFIGVQYHPEYLSRVLKPSPPYLGFVA 558
                 7.9********************************999986 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   4.7e-08   0.00021     101     216 .]     398     541 ..     389     541 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 4.7e-08
  Peptidase_C26 101 alergvPilgiCrGlqllnvalGGtlyqdiee.qsgltdhrehe................q.saashavkve...kgsllaellgseeievnslHh 175
                    a ++ +P lgiC G+ql  + +  ++   ie+ +s + + + +e                +     +a +++   + s l +l+g++  +v   H+
     KKY20794.1 398 ARTKPKPYLGICFGMQLAVIEYARSVCG-IENaASFELNAQTPEplvvfmpeidkatmggNmRLGLRATHFQpdsSWSKLRKLYGADLEAVHERHR 492
                    4567799*********998777766654.5540333344444447888877776554443143333444445222445677777766666666665 PP

  Peptidase_C26 176 qaike........laeelrveAvae.DgviEaieseeakafvlgvQwHPE 216
                       +          + +l+ +  ++  + +E +e+++++ f++gvQ+HPE
     KKY20794.1 493 HRYEVnpayidrlTEAGLNFIGKDDkGERMEIVELKDHP-FFIGVQYHPE 541
                    54444558888877889*****9996678********88.*********9 PP

>> DUF2961  Protein of unknown function (DUF2961)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.2e-05      0.28      93     157 ..      79     146 ..      66     147 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.2e-05
     DUF2961  93 lyfhaqwrrenpnekkgkeyv.ildvkGkGkyvgvnlavdnl.eet..wwgEGdekifiDgdekfpslh 157
                  y++ + +ren+ ++ gk y  +++ + +G y+g +++v  + ++    w E   ki +D+ ++ p ++
  KKY20794.1  79 RYLNITLTRENNITT-GKIYQhVIERERRGDYLGQTVQVVPHlTNAiqDWIERVAKIPVDDTNEEPDVC 146
                 68888999**99877.777776999************9999876668899************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.51
# Mc/sec: 3529.34
//
Query:       KKY20795.1  [L=423]
Description: putative mfs glucose [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-88  296.6  13.2    3.7e-88  296.4  13.2    1.1  1  Sugar_tr         Sugar (and other) transporter
    3.4e-17   62.4  15.6    2.5e-16   59.5   9.2    2.1  2  MFS_1            Major Facilitator Superfamily
     0.0081   16.4   1.4        4.4    7.7   0.0    2.6  2  DUF4134          Domain of unknown function (DUF4134)
  ------ inclusion threshold ------
        3.1    7.0   8.4        1.2    8.3   0.4    2.5  3  ABC2_membrane_2  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.4  13.2   8.2e-92   3.7e-88     104     452 .]       1     370 [.       1     370 [. 0.93

  Alignments for each domain:
  == domain 1  score: 296.4 bits;  conditional E-value: 8.2e-92
                 GGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT CS
    Sugar_tr 104 vlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekg 202
                 +l+vgR++ G++vG++s+ vP+y+sE+Ap+++Rg++v+ +q+ait+Gil+ + + +g++++++   +r   glq++pa++l+++l++lPESPr+l + +
  KKY20795.1   1 MLVVGRFINGLSVGICSAQVPVYVSELAPPSKRGRVVGAQQWAITWGILIMFYISYGTSYINGVASFRTAWGLQMIPAIFLFFMLFLLPESPRWLAKED 99 
                 799************************************************************99********************************** PP

                 -HHHHHHHHHHHHHC.....HHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HHHHH CS
    Sugar_tr 203 keeeakevlaklrge.....edadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks..llvti 294
                 + e+   vla + g+     + +  el+++kd  e e++++ +s+ el+s  ++  r+ igv +qi+ qltG+n++myy ++if  +gl+    l+++ 
  KKY20795.1 100 RWEDCHNVLALVHGKgdrnhAFVMSELQQIKDVREFERQNRDVSYFELFSP-KMINRTHIGVFTQIWSQLTGMNVMMYYITYIFGMVGLNGNtnLIASS 197
                 **********977775455567778888999998888888899999***99.779***********************************9999***** PP

                 HHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH...HHHHTTSS..................CHHHHHHHHHHHHHHHTTTTHHHHHHHHH CS
    Sugar_tr 295 ivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg.ivalllvaks...............kaasivaivfialfialfalgwgpvpwvlvsE 377
                 i +v+n+ +t++a+  +dr+GRR  ll+G++ ma  +   +  +a  ++ +                 a + ++i++++lf+a +a++wgpv w++ +E
  KKY20795.1 198 IQYVINVCMTVFALIYIDRWGRRWPLLIGSTLMATWMYANAgLMASYGKPAPpggvdgvaeeswqisGAPGRAVIACTYLFVASYAPTWGPVSWIYPPE 296
                 *****************************999999888777533333333335777778887888866668899************************* PP

                 HSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 378 lfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 lfp+++R+ka a+++ +nw++nf+ s++ p ++e+++ ++v+++f++++ ++++ v+f +pet g+tleeieelf
  KKY20795.1 297 LFPLRLRGKANALTTSSNWIFNFALSYFVPPAFENVK-WKVYIIFGVFCTVMTVHVYFMFPETSGKTLEEIEELF 370
                 *************************************.**********************************997 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   9.2   5.7e-20   2.5e-16      87     342 ..       1     311 [.       1     314 [. 0.72
   2 !    9.4   0.5   9.7e-05      0.44     111     187 ..     295     368 ..     287     391 .. 0.76

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 5.7e-20
       MFS_1  87 lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgg...llasslgWravfyilaivsllafvlfllllpeepperkrk 182
                 +l+v+r++ Gl  g+  + + +++++++p+++rgr++g  + ++  G+++   ++    ++   +++r ++ +  i ++++f  +l+llpe+p+  +++
  KKY20795.1   1 MLVVGRFINGLSVGICSAQVPVYVSELAPPSKRGRVVGAQQWAITWGILIMFYISYgtsYINGVASFRTAWGLQMIPAIFLFF-MLFLLPESPRWLAKE 98 
                 79****************************************************995555666666*************9977.235555555555555 PP

       MFS_1 183 spkeee....................kgtgpaplvp........awkallkdpvlwillialllfffgfsg.....lltllplylqevlglsglllagl 248
                   +e+                     + ++ + +++         + +l++++ +    i++++   ++s+     ++++  +y+    gl+g  ++++
  KKY20795.1  99 DRWEDChnvlalvhgkgdrnhafvmsELQQIKDVREferqnrdvSYFELFSPKMINRTHIGVFTQ--IWSQltgmnVMMYYITYIFGMVGLNG-NTNLI 194
                 55555599999999988777777777333333333322333334344444444331222222222..33335556666666666688888886.88888 PP

       MFS_1 249 llallalvgailallagrlsdrlgrrrrlllallllllaalglallavt.............ssavllll..........vlvliGfglgfvfpsllal 324
                 ++++ +++++++ ++a  ++dr+grr++ll++  l++++  + a l ++              + ++ +            ++++   + +  p ++ +
  KKY20795.1 195 ASSIQYVINVCMTVFALIYIDRWGRRWPLLIGSTLMATWMYANAGLMASygkpappggvdgvAEESWQISgapgraviacTYLFVASYAPTWGPVSWIY 293
                 8************************99999999999999999888888888888888888884444444455655532212222333444448888888 PP

       MFS_1 325 asdlappeeagtasglfn 342
                   +l+p + +g+a++l++
  KKY20795.1 294 PPELFPLRLRGKANALTT 311
                 889999999998888876 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 9.7e-05
       MFS_1 111 adwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkee 187
                  ++fp + rg+a++l ++++ +       + +   +++ W  v++i+++++ ++ v   ++++ ++++ k+ +++ee
  KKY20795.1 295 PELFPLRLRGKANALTTSSNWIFNFALSYFVPPAFENVKWK-VYIIFGVFCTVMTVH--VYFMFPETSGKTLEEIEE 368
                 67899999**********999999555555555557999*9.9***********998..666666666666666665 PP

>> DUF4134  Domain of unknown function (DUF4134)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.5    0.0018         8      19      49 ..     182     212 ..     159     214 .. 0.83
   2 !    7.7   0.0   0.00098       4.4      35      78 ..     329     372 ..     319     376 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0018
     DUF4134  19 kGaagiseatsevasyfdpvtkliyaiaavv 49 
                 +G+ g++  t+ +as +++v ++++ + a++
  KKY20795.1 182 FGMVGLNGNTNLIASSIQYVINVCMTVFALI 212
                 3899***********************9987 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00098
     DUF4134  35 fdpvtkliyaiaavvglvgalkvYikwnsgdqdvkksiaawfga 78 
                 f+ v   +y+i +v+ +v +++vY+ + +   ++ ++i  +f a
  KKY20795.1 329 FENVKWKVYIIFGVFCTVMTVHVYFMFPETSGKTLEEIEELFMA 372
                 66666679*******************99999999999998877 PP

>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.4   0.00028       1.2     119     208 ..       2      88 ..       1      93 [. 0.87
   2 ?   -2.1   0.1      0.41   1.8e+03     142     177 ..     171     206 ..     124     214 .. 0.56
   3 ?    3.2   0.3    0.0098        44     243     283 ..     318     355 ..     302     358 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00028
  ABC2_membrane_2 119 illgKfigglaigla.iavallatvllalaiilalgivlaledllll.vvasvlllllvvflalglllSsvarssreaaalalglfvvlail 208
                      +++g fi gl +g+    v + ++   +la+  + g v+ ++++ ++  +++++++ ++  ++   +++s+      ++  a++lf++l++l
       KKY20795.1   2 LVVGRFINGLSVGICsAQVPVYVS---ELAPPSKRGRVVGAQQWAITwGILIMFYISYG--TSYINGVASFRTAWGLQMIPAIFLFFMLFLL 88 
                      7999***99999988888888888...99999999999999888665379999999966..9***************************876 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.41
  ABC2_membrane_2 142 vllalaiilalgivlaledllllvvasvlllllvvf 177
                      + +++ +i +    + l  +++l+++s+ +++ v++
       KKY20795.1 171 MNVMMYYITYIFGMVGLNGNTNLIASSIQYVINVCM 206
                      333333333333344444444555555555554443 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.0098
  ABC2_membrane_2 243 ntllneilagsdlnalgstatnllilllllavllvlgyvlF 283
                      n++l+ +   + +n   ++++ ++i+ + ++v++v++y++F
       KKY20795.1 318 NFALSYFVPPAFEN---VKWKVYIIFGVFCTVMTVHVYFMF 355
                      45555555555444...89*******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       830  (0.0462937); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 2612.29
//
Query:       KKY20796.1  [L=365]
Description: putative nickel transport [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-37  129.2   9.3    7.6e-34  117.3   1.8    2.2  2  NicO      High-affinity nickel-transport protein
  ------ inclusion threshold ------
       0.21   11.7   2.6         11    6.1   0.2    2.7  2  DHHC      DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> NicO  High-affinity nickel-transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.3   1.8   8.4e-38   7.6e-34      48     207 ..       8     168 ..       2     170 .. 0.93
   2 !   16.2   1.0   5.6e-07    0.0051     215     275 ..     223     285 ..     212     293 .. 0.91

  Alignments for each domain:
  == domain 1  score: 117.3 bits;  conditional E-value: 8.4e-38
        NicO  48 slvvvlvavllvvaavlvlr.ltslsetgaaigtei.asFllvilllnllllrklrklfrklerlgrapaaeleaalakr..gllsrilgklfrlitks 142
                 sl+v++++++++ +a +++   +s+   g++ig ++ a+Fl++++l+nl +l+ l+ + +k+ r    ++ ele+a + +  g l   l+k+f+li+++
  KKY20796.1   8 SLIVIITSIVVAATASAFSSkFDSVGTVGGIIGSSVsAAFLILLGLMNLYILYRLIVQLKKVLR---LQEDELEQAWQVEggGCLFILLKKMFKLIDRP 103
                 99**********999999888***********************************99999977...556666666665544999999*********** PP

        NicO 143 whmypvgflfglGfdtateiallaidpsealkgdsfdsilalpalfavGlrlcdgadivlmfaal 207
                 w myp+g+lfglGfdt +eiall+i++ +a+kg s++ il++p+lf++G++l+d++d++lm+ ++
  KKY20796.1 104 WKMYPLGVLFGLGFDTSSEIALLGISSIQAAKGTSIWLILIFPVLFTAGMCLIDTIDGALMLTLY 168
                 **************************************************************998 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 5.6e-07
        NicO 215 rklvyamsitgtsitvalliglivtlklvakkfalsgslwaaiisle..leivGavlvllfal 275
                 + l+y++ +t + ++val+ig+i +l  + +  + +g++w+ ++++    e++G  + + f++
  KKY20796.1 223 AFLYYSIILTVLTVIVALVIGTIQLLTMILNVASPTGRFWDGVETAGdyYEVIGGCICASFVV 285
                 579****************************************99999999999988887775 PP

>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2    0.0012        11      39      87 ..      35      83 ..      28     169 .. 0.79
   2 ?    5.0   0.0    0.0027        24      55     115 ..     229     292 ..     188     296 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0012
        DHHC 39 lnnciGerNykyFllfllylllllilalvlllialvklveeekksefla 87
                ++  iG     +Fl++l  + l++++ l+++l  +++l e+e ++ +++
  KKY20796.1 35 VGGIIGSSVSAAFLILLGLMNLYILYRLIVQLKKVLRLQEDELEQAWQV 83
                678899999999********************99999998887766553 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0027
        DHHC  55 llylllllilalv...lllialvklveeekkseflavtllkkllsilllvlsllfllllgllll 115
                 ++ ++l +i+alv   ++l +++ +v + +  ++  v++  ++++++  ++++ f+++ gl ++
  KKY20796.1 229 IILTVLTVIVALVigtIQLLTMILNVASPTGRFWDGVETAGDYYEVIGGCICASFVVIGGLSIF 292
                 2333333333333111444444444444444445555555557777777777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1044  (0.0582297); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.54
# Mc/sec: 2018.73
//
Query:       KKY20797.1  [L=219]
Description: putative mitochondrial import inner membrane translocase subunit tim23 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-27   93.7   4.5    1.2e-26   93.3   4.5    1.2  1  Tim17     Tim17/Tim22/Tim23/Pmp24 family


Domain annotation for each model (and alignments):
>> Tim17  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   4.5   6.7e-31   1.2e-26       2     109 ..      97     206 ..      96     208 .. 0.96

  Alignments for each domain:
  == domain 1  score: 93.3 bits;  conditional E-value: 6.7e-31
       Tim17   2 vyktglsgvlGallGavfglvkgsrradtpapskerlreglrsvgkrgpslGknfgvvgglysgiecaleklRgkediwnsvaAGaltGallr..agpq 98 
                 +y tg++++ ++ +G+++gl++g+ ++++ ap k+r++++l+ +++rgp+lG+++gvv+++y+g+++++ ++Rgk+d  ns++AG l+G+l++   g++
  KKY20797.1  97 CYGTGTTYLTALTVGGAWGLIEGLNKTPASAPPKLRINSVLNGMTRRGPFLGNSAGVVAMVYNGVNSTIGYYRGKHDSANSIIAGGLSGMLFKstRGIR 195
                 899*****************************************************************************************77899** PP

       Tim17  99 aaavgaiggaa 109
                 ++++++ ++a 
  KKY20797.1 196 PMMISGGIVAG 206
                 **999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.48
# Mc/sec: 1363.97
//
Query:       KKY20798.1  [L=1618]
Description: putative heat repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-50  170.8   0.4    6.2e-50  170.0   0.4    1.5  1  DUF2428   Putative death-receptor fusion protein (DUF2428)
    0.00017   21.6   3.7        2.4    8.6   0.1    6.1  6  HEAT      HEAT repeat
  ------ inclusion threshold ------
      0.023   15.2   0.5         12    6.5   0.1    4.0  3  HEAT_EZ   HEAT-like repeat


Domain annotation for each model (and alignments):
>> DUF2428  Putative death-receptor fusion protein (DUF2428)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.0   0.4     1e-53   6.2e-50       2     275 .]     700     944 ..     699     944 .. 0.90

  Alignments for each domain:
  == domain 1  score: 170.0 bits;  conditional E-value: 1e-53
     DUF2428   2 lverllelcerisevvlpvvsssspegllpedldseeesaeeeeeeeeeeeeekkekeekkkvtaqvvlvccWrsmKevslllgtllqklplqtekess 100
                 l++r++++ce +++ v++ ++ ++pe   +++ d                       ++++   ++ vl+++Wr+++ +s ll++++qk++ ++++e+ 
  KKY20798.1 700 LIDRIFKICEMVWRRVKDRLCVDAPES-EEDEIDG----------------------SSNDVGGPKDVLSYSWRALRDSSVLLSSVIQKVSTSSKSEKH 775
                 789***********************5.2222221......................11113568****************************999998 PP

     DUF2428 101 dssglltveqleeigelfleqLlelrHrGAfekayvgFtklcerllrskdeelqklpeqwleelleeikssssklcitRRSAGlPfliqallssepkks 199
                 +    +t++q + igel +eqL  lrHrGAf++++++F+ +c ++ +s    + +l++ w++++ e +   +++l +tRRSAGlP+l+ a+l  +    
  KKY20798.1 776 SP--QMTLAQCRGIGELSFEQLRDLRHRGAFSTVSQTFSHCCMMCAKSAVDGVPQLLNGWYRRAEETVD--DQSLRLTRRSAGLPALFAAILGPS---- 866
                 88..89******************************************9999999**************..*********************993.... PP

     DUF2428 200 kkklLkrtmkeLlelakkea...seeesesddesdlpqvhalNiLralfrdsrLgeevspyvadglilaiegfsspvWa 275
                 +++ ++  m++ l+ a++ +   + ++ ++++++ lpqvh lN+ r+++++++++e++++++  +l +a  ++ ++ Wa
  KKY20798.1 867 STDIFNGFMRSFLTRATE-LdalTHASADAESSIPLPQVHILNCVREIITNANFRERTEEWIITALRTATICLACDFWA 944
                 4568************85.458844445566999********************************************7 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.46   2.7e+03      11      26 ..     395     410 ..     389     412 .. 0.78
   2 !    8.6   0.1    0.0004       2.4       3      26 ..     543     566 ..     541     571 .. 0.85
   3 ?    1.2   0.0     0.098   5.9e+02       2      22 ..    1061    1081 ..    1060    1082 .. 0.92
   4 ?    0.4   0.0      0.18   1.1e+03       2      29 ..    1300    1328 ..    1299    1330 .. 0.88
   5 ?   -1.1   0.0      0.54   3.2e+03      17      30 ..    1358    1371 ..    1354    1372 .. 0.89
   6 !    4.9   0.0    0.0062        37       5      24 ..    1393    1412 ..    1391    1419 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.46
                 -SSHHHHHHHHHHHHH CS
        HEAT  11 DpspeVReaAakaLga 26 
                 + + +VR+ A++ +ga
  KKY20798.1 395 SGDVRVRAFAILVIGA 410
                 568899*999999986 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0004
                 HHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLga 26 
                   l +ll+Dp  +VR++Aa  L a
  KKY20798.1 543 SSLFNLLMDPFQDVRASAASLLLA 566
                 56899**************99865 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.098
                  HHHHHHHHT-SSHHHHHHHHH CS
        HEAT    2 lPlllkllsDpspeVReaAak 22  
                  lP +l +l    + +R+ Aa+
  KKY20798.1 1061 LPYILDNLGNRVWLIRDHAAR 1081
                  8***************99985 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.18
                  HHHHHHHH.T-SSHHHHHHHHHHHHHHHH CS
        HEAT    2 lPlllkll.sDpspeVReaAakaLgalae 29  
                   +lll+++ ++++ +V ++A + L+ l+e
  KKY20798.1 1300 QDLLLHCIeRSSDENVVYTAMNGLAGLLE 1328
                  5789999999*************999987 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 0.54
                  HHHHHHHHHHHHHC CS
        HEAT   17 ReaAakaLgalaev 30  
                  R +A+ +L +la++
  KKY20798.1 1358 RLNAVHSLRNLAQI 1371
                  99*********996 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.0062
                  HHHHHT-SSHHHHHHHHHHH CS
        HEAT    5 llkllsDpspeVReaAakaL 24  
                  l+ +l+D++ e+Re A  + 
  KKY20798.1 1393 LVDALNDDDEEIRELASITE 1412
                  7889**********998765 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.25   1.5e+03       2      20 ..     399     414 ..     398     431 .. 0.67
   2 ?    6.5   0.1    0.0021        12      22      52 ..     534     564 ..     533     564 .. 0.87
   3 ?    3.4   0.0     0.019   1.1e+02      33      50 ..    1393    1410 ..    1357    1411 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.25
     HEAT_EZ   2 rvRraAawaLGrlaggepe 20 
                 rvR+ A++++G++ +   e
  KKY20798.1 399 RVRAFAILVIGAAQS---E 414
                 89*********6332...2 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0021
     HEAT_EZ  22 lqplvpeilpaLlalLnddsdeVRaaAagaL 52 
                 ++++ + ++  L +lL+d+ ++VRa Aa  L
  KKY20798.1 534 VSLHSSSMVSSLFNLLMDPFQDVRASAASLL 564
                 5677889999*****************9765 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.019
     HEAT_EZ   33 LlalLnddsdeVRaaAag 50  
                  L+ +Lndd+ e+R+ A +
  KKY20798.1 1393 LVDALNDDDEEIRELASI 1410
                  8899**********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.03u 0.38s 00:00:01.41 Elapsed: 00:00:00.58
# Mc/sec: 8469.22
//
Query:       KKY20799.1  [L=799]
Description: putative glucoamylase precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     1e-103  347.5   2.0   1.3e-103  347.2   2.0    1.1  1  Glyco_hydro_15  Glycosyl hydrolases family 15
    2.5e-27   96.0   0.1      4e-27   95.3   0.1    1.3  1  MRP-L46         39S mitochondrial ribosomal protein L46


Domain annotation for each model (and alignments):
>> Glyco_hydro_15  Glycosyl hydrolases family 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.2   2.0  1.5e-107  1.3e-103       2     446 ..      42     457 ..      41     459 .. 0.96

  Alignments for each domain:
  == domain 1  score: 347.2 bits;  conditional E-value: 1.5e-107
                     HHHHHHHHCBCSTTSSBTTS-TT-B-S-S-BSSSB--SEEHHHHHHHHHHHH.......HHHHHTTT-HCCHHHHHHHHHHHHHHCTS-BTTB-T CS
  Glyco_hydro_15   2 vrldlylrnvktlilleqnpvtGlliASpstsdpDYrytWvRDsvyvilavwglgyrdedrakayeleqslvklmrglleamvrqagkvekfket 96 
                     ++l+++l+n+++++++  ++ +G++iASps+++pDY ytW+RDs++++++++        ++++   ++sl+  +++++  ++  +g ++++++ 
      KKY20799.1  42 IALQGVLNNIGSTGAWSAGAKAGIVIASPSQNNPDYLYTWTRDSALTFKMIV--------DTFIATGNTSLESHIEDYVGSQAVLQGVSNPSGTL 128
                     6899************************************************........7888888**************************86 PP

                     TSCGGGG--EE-TTS-B--S-..-S--BTTHHHHHHHHHHHH....HCTT..HCHCCCCHHHHTHHHHHHHHHHHTTS-EE-TTS--ECEEHH.. CS
  Glyco_hydro_15  97 qstkgLhakyftktgstvvGddewghlQlDatslyllalaqm....tasg..lqiistldevafvqnlvdYieaayktpdfglWEenqgeselna 185
                     + + gL++++f+ ++++++G+  wg++Q+D+++l+++al+++    +++g  + +++ ++++  ++n+++Y+++++++++++lWEe+ g+s++  
      KKY20799.1 129 STG-GLGEPKFNIDETAYTGS--WGRPQRDGPALRATALIAYakylISNGrtSSVTNIVWPI--IRNDLSYVAQYWNQTGYDLWEEVSGSSFF-- 216
                     666.*****************..*******************99999999999999******..*****************************.. PP

                     HHHHHHHHHHHHHHHHHHCT-HHHHCCHHHHHHHHHHHHHSTTT..GGGEETTCCECECSCH.....HHHTTS--S-BCHHHHHHHHCS-TTS.- CS
  Glyco_hydro_15 186 ssvgmakAlleaideadlfgakgdaqlvektkdeilnklqgkygckrgfwplfntylildgsfaedkeqvqeyrealdasllllpelyfvpad.d 279
                     +++++++Al+e+ ++a ++g  ++++ ++++++++l+ l       + fw+ +++  +++ +         + r ++da+ +l+++++f+p +  
      KKY20799.1 217 TIAVQHRALVEGSALASSIG--SSCSYCDSQAPQLLCFL-------QNFWTGSYINSNINVN---------NGRTGKDANSILASIHTFDPSAtA 293
                     ********************..*****************.......99**966666666666.........9******************97526 PP

                     TT-TT-TTTSHHHHHHHHHHHHHHHHHSGGGTT-STTS...--SBTT--CGSSSBSCT--BHHHHHHHHHHHHHHHHHHHHHTE-EEEECCCHHH CS
  Glyco_hydro_15 280 vdeeyqnpqsprllaqslyildsllsegflavgeldpl...vrRysedvkpdklglsGrpyylctlwtvetlldelyekagkgrlwglvryalgl 371
                     +d+++++p+s ++la++++++ds++s +++++g  ++    v+Ry ed+++     +G+p+yl t++++e+l+d+ly++++ g+ +++++ +l++
      KKY20799.1 294 CDDTTFQPCSAKALANHKQVIDSFRSIYTINSGIAEGTavaVGRYAEDSYY-----NGNPWYLNTFAAAEQLYDALYQWNSIGS-ITVTSVNLAF 382
                     9*********************************99999***********9.....**************************99.********** PP

                     HHHHTTTTTGGGSSEEE.TCHHHHHHHHHHHHHHHHHHHHHH.S-TTS---SEE-TTT--EESSTT-HHHHHHHHHH CS
  Glyco_hydro_15 372 leklveskqltvGlppe.resvisaplpveeladliveavee.dnslgvLteevdvylgeliraqpllfsealllri 446
                     +++l +s  +++G++++ ++++ +  ++v+++ad +++++e+ ++s+g+L+e++++ +g++++a +l++s+a++l++
      KKY20799.1 383 FQDLDSS--IATGTYSSsSATYSTLTSAVKTYADGYMSVAEKyTPSNGSLSEQYSKSDGTPLSAYDLTWSYAAFLTA 457
                     *******..********9*********************************************************97 PP

>> MRP-L46  39S mitochondrial ribosomal protein L46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   0.1   4.5e-31     4e-27       3     119 .]     480     612 ..     478     612 .. 0.86

  Alignments for each domain:
  == domain 1  score: 95.3 bits;  conditional E-value: 4.5e-31
                 EEEE-B--B--SB-----HHHHHH....HHHHHHHHHHT----HHHHTTHHHHHHHHHHH---------.....----HHHHHHHHHHHHHHS...... CS
     MRP-L46   3 ikagliLsRpPvvtrelspfEkefYkYqkellerlelefskyfyfkkgtlaelkfkelkkklterdeevardigkpdlrqererndeqeikspks.... 97 
                 i+ag++LsR P+++++++pfE++fY Yqk+l+erl l+f++yfyfk+gt+a +++   k+  +er + + rd+g++d++++ ++ de  +++++     
  KKY20799.1 480 IRAGVLLSRAPLLSASPTPFESAFYYYQKRLNERLVLPFTQYFYFKRGTPAYEEW---KARRRERAGVAGRDVGNYDAYSQDAWHDEALVGDKEDkpes 575
                 89*****************************************************...77777788888999********************9877766 PP

                 ...........................----S-SSTT CS
     MRP-L46  98 yeealeeda...............rvikpasRvTeaD 119
                  +++l e++               ++    +R+TeaD
  KKY20799.1 576 IVKKLVEEEgketfpaeeelqdlnKPLNGLRRITEAD 612
                 3333333336777888898887777778889****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (799 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.51
# Mc/sec: 4683.60
//
Query:       KKY20800.1  [L=330]
Description: hypothetical protein UCRPC4_g04072 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-29  103.1   0.0    9.4e-16   58.3   0.0    2.1  2  Alpha-amylase  Alpha amylase, catalytic domain
    5.9e-21   74.6   0.3    1.6e-20   73.2   0.1    1.9  2  DUF1966        Domain of unknown function (DUF1966)


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.1   2.8e-15   2.5e-11      16      58 ..       1      46 [.       1      47 [. 0.94
   2 !   58.3   0.0     1e-19   9.4e-16     166     337 .]      46     188 ..      44     188 .. 0.93

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 2.8e-15
                   CT-SCEEE-B-CE...-S-TTTTSS-SCECCE-CCC--CCCCCCHH CS
  Alpha-amylase 16 LGvtaiwlsPifk...spqadhgYdiadytkidpefGtnedlkeLi 58
                   +G+taiw+sPi++    ++ +hgYd+++ +k++ +fGt+ dl++L+
     KKY20800.1  1 MGFTAIWISPITMqigDSNTYHGYDQSNLYKVNSHFGTASDLQTLS 46
                   8************999566************************995 PP

  == domain 2  score: 58.3 bits;  conditional E-value: 1e-19
                    T-SEEEETTCCCTTTCCCCHCCHCCHHHHHHHHHHHTCCGTT-EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS-HHH CS
  Alpha-amylase 166 gidGfRlDvvkhvskvealesngeflheftqalnetvasrkevmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlksisakk 261
                    +idGfR+D v+ v+         +f  +f  a+         v++vgEv +++s+  +v+ ++++l+    +++p +    +a+   +++s s+ +
     KKY20800.1  46 SIDGFRIDSVQNVEP--------DFFPDFSSAAG--------VYCVGEVLNSQSS--YVCPYQDYLDGI--INYPLYFSLISAF---ESTSGSMTD 118
                    59*************........********999........89*******7775..99******9998..9999998888888...788889*** PP

                    HHHHHHHHHHHS-CCCTTCEEES--TTS--HHHHTTSSTTTTHHHHHHHHHCCCTSSSEEEEETTCCCT----STT CS
  Alpha-amylase 262 lkellkkwlkaleeaaeeavtflgnHDqeRilsrlgddsaeaekklklaaillltlrGvpviYyGeEigmtggkdp 337
                    l++++++ ++++ + ++ ++ fl+nHD +R+  +++d+s      +++a + +l+++G p+iY G+E g++   dp
     KKY20800.1 119 LASVYTTLKSSCAD-TTLMAPFLENHDRPRFPYYTSDTS-----LIRNAILTTLMSDGPPIIYEGQEYGLSSSGDP 188
                    *************9.999*********************.....8************************9987765 PP

>> DUF1966  Domain of unknown function (DUF1966)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.3   1.1e+04      16      43 ..      25      50 ..      20      55 .. 0.71
   2 !   73.2   0.1   1.8e-24   1.6e-20       2      90 .]     239     328 ..     238     328 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.3
     DUF1966 16 egsqvvtvlsnkGssgssytlslkssgy 43
                + s++  v s  G+ ++  tls++  g+
  KKY20800.1 25 DQSNLYKVNSHFGTASDLQTLSID--GF 50
                556666777788888888888886..55 PP

  == domain 2  score: 73.2 bits;  conditional E-value: 1.8e-24
     DUF1966   2 lysdkstlalrKgpegsqvvtvlsnkGssgssytlslks..sgyaagtevvdvlsCksvtvdssgeltvtmekGePrvlvpksklegsglC 90 
                 +ysd++t+alrKg++g+q vt+++n+Gs+gs+y+++l++  +g+  ++ +v+++sC + t++s g   v++e+ eP++++ +s l+g+glC
  KKY20800.1 239 IYSDSHTIALRKGSAGTQSVTLITNQGSDGSAYDVTLTTseTGWDVDEDIVEAISCDTGTTNSGGGFVVSVES-EPQIWLGSSLLSGTGLC 328
                 9********************************999987779***************************9975.9**************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.52
# Mc/sec: 1895.62
//
Query:       KKY20801.1  [L=461]
Description: hypothetical protein UCRPC4_g04073 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.032   14.8   2.5      0.062   13.8   2.5    1.4  1  V-ATPase_G  Vacuolar (H+)-ATPase G subunit


Domain annotation for each model (and alignments):
>> V-ATPase_G  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.5   3.5e-06     0.062      37      61 ..      32      56 ..      24      64 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.5e-06
                HHHHHHHHHHHHHHHHHHHHHHHHH CS
  V-ATPase_G 37 eAekEieeyrakkekefkekeaekl 61
                +  +Ei +++a+kekefke+e+e  
  KKY20801.1 32 QLDEEISQFKAQKEKEFKEFESELR 56
                5579*****************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       801  (0.0446762); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.56
# Mc/sec: 2457.70
//
Query:       KKY20802.1  [L=154]
Description: hypothetical protein UCRPC4_g04074 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-06   26.6   0.0    6.1e-06   26.4   0.0    1.1  1  Velvet    Velvet factor
  ------ inclusion threshold ------
      0.094   13.2   0.0       0.14   12.6   0.0    1.2  1  DUF4985   Domain of unknown function


Domain annotation for each model (and alignments):
>> Velvet  Velvet factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   6.8e-10   6.1e-06     140     219 ..      46     128 ..      28     149 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 6.8e-10
                 ----EESEEE--EEE-EE...EE-TT--EEEEEE---EEESS-EEEEEEEEEEE-B-S--B--S..SEEEEEEEEE---EEEE CS
      Velvet 140 sskltrnLiGslvasafr...lkdpedkpgifFvfqDLSVRteGtFrLrfrlvnvgaeavaveekegsapvlaevfSdpFtVy 219
                 +  +t+ LiG+++as+f      +p+++   +  f+DL +  +G++r+r++l+++ ++  + +e ++    l +++Sdp  V 
  KKY20802.1  46 APPRTDLLIGRTAASVFApgpRAEPNRQIVGYAQFSDLMITVPGKYRIRVSLIDMDTDGPSYSEGSQGGLNLCTITSDPIDVT 128
                 456899************9988889999*****************************98888888888889999999998875 PP

>> DUF4985  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.6e-05      0.14       7      82 ..      68     144 ..      65     150 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.6e-05
     DUF4985   7 ataeYkktGYAdlldvllt..GaYysevtieevkkkgsaewysvegscelakkllkgdvpvaggldveqyegeaekie 82 
                 a+++ + +GYA+  d+++t  G Y  +v+  +++++g ++ +  +g+++l  +++++ + v+++   +q +++++++ 
  KKY20802.1  68 AEPNRQIVGYAQFSDLMITvpGKYRIRVSLIDMDTDGPSYSEGSQGGLNLC-TITSDPIDVTASAPLQQPTTDETQLL 144
                 56677789********98777********************9999999876.68899999999999999887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.49
# Mc/sec: 949.88
//
Query:       KKY20803.1  [L=652]
Description: putative signal recognition particle protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-17   63.2   1.1    8.1e-17   61.3   1.0    2.0  2  SRP_TPR_like  Putative TPR-like repeat
    1.1e-12   48.1   1.0      5e-12   46.1   1.0    2.1  1  SRP72         SRP72 RNA-binding domain
    3.9e-07   30.5  12.6      0.022   15.3   1.2    6.0  6  TPR_19        Tetratricopeptide repeat
     0.0027   18.0   2.8        8.1    6.9   0.0    3.5  3  TPR_20        Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.014   15.6   1.9         35    5.0   0.2    4.6  4  TPR_8         Tetratricopeptide repeat
      0.047   14.3   0.3         54    4.8   0.0    3.8  4  TPR_4         Tetratricopeptide repeat
      0.083   13.1   5.5          1    9.6   2.4    3.2  4  ANAPC3        Anaphase-promoting complex, cyclosome, subunit 
       0.11   12.3   0.3        8.6    6.4   0.0    3.7  3  TPR_1         Tetratricopeptide repeat
       0.18   12.7   9.9    1.8e+02    3.3   2.1    6.2  6  TPR_14        Tetratricopeptide repeat
       0.56   10.9   7.2        1.3    9.8   2.0    3.5  3  TPR_16        Tetratricopeptide repeat
        1.1    9.6  14.6        8.7    6.7   0.0    6.0  8  TPR_2         Tetratricopeptide repeat
        4.5    7.6   8.1         49    4.3   0.0    3.9  4  TPR_12        Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> SRP_TPR_like  Putative TPR-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   1.0   5.4e-20   8.1e-17      19     117 .]      34     147 ..      17     147 .. 0.85
   2 ?   -1.9   0.0       2.2   3.3e+03      48      67 ..     218     237 ..     209     249 .. 0.75

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 5.4e-20
  SRP_TPR_like  19 f.........kvvaliklekyeeaLkllkkgs.alsedvrfEkaYvlYklkkykkalkilkkveaeekvkvlksqvlYrlgsyekA...YklL...s 99 
                             kvval+k ++y+eaL++ +  + +l ++ r E +Y lYk+ ++++a+++  k+++   +k++++q lYr + + +A   Y+ L    
    KKY20803.1  34 NkadsqaqhaKVVALLKSDRYDEALQFFDTVGdSLKDKARLELSYTLYKVGRLEEAASVAAKAQTR-AAKHVAAQSLYRSEAFLEAaslYDELkdgI 129
                   4444444555******************9865489******************************9.9****************9999999996655 PP

  SRP_TPR_like 100 kekkedelvvNllAvdsl 117
                     ++e++l++N  Av+++
    KKY20803.1 130 PPHEEQDLRINKGAVEAQ 147
                   57899*********9985 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.2
  SRP_TPR_like  48 rfEkaYvlYklkkykkalki 67 
                    + + Yvl kl k ++a  +
    KKY20803.1 218 SVQQLYVLSKLGKHEEAKGL 237
                   56677999999999988755 PP

>> SRP72  SRP72 RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   1.0   3.3e-15     5e-12      17      58 .]     562     603 ..     544     603 .. 0.82

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 3.3e-15
       SRP72  17 gkkkkrkkkrkRkvklPKnydpgvtpDPERWLPrreRSsYrk 58 
                 +++   k++r  k+++PK++ +g++ DP+RWLP+reR sYr+
  KKY20803.1 562 QTSGTTKRRRLPKSRIPKDFVEGKQLDPDRWLPLRERASYRP 603
                 3333345677779999*************************7 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.2   5.5e-05     0.082      18      60 ..      31      73 ..      21      75 .. 0.84
   2 !   15.3   1.2   1.4e-05     0.022       1      64 [.      48     109 ..      48     112 .. 0.87
   3 ?    0.6   0.2      0.56   8.4e+02      32      51 ..     222     241 ..     180     250 .. 0.51
   4 !   11.8   0.0   0.00018      0.27      16      49 ..     359     392 ..     350     396 .. 0.85
   5 ?   -1.1   0.0       1.8   2.7e+03      23      51 ..     406     437 ..     393     440 .. 0.75
   6 ?    2.8   0.0      0.11   1.7e+02       8      31 ..     471     494 ..     465     499 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.5e-05
      TPR_19 18 lqedpknaearllLAeallalgqldeAealLdalpeedpddar 60
                l+++  ++ a+ + + all++ ++deA +  d+++++ +d ar
  KKY20803.1 31 LKKNKADSQAQHAKVVALLKSDRYDEALQFFDTVGDSLKDKAR 73
                455778999999999**********************999655 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.4e-05
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasL 64 
                 ll++ +y+eAl+++  +   d   + arl L   l++ g+l+eA  + ++++  ++++ +++sL
  KKY20803.1  48 LLKSDRYDEALQFFDTV--GDSLKDKARLELSYTLYKVGRLEEAASVAAKAQTRAAKHVAAQSL 109
                 78999***********9..555678888889****************99999999997666666 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.56
      TPR_19  32 AeallalgqldeAealLdal 51 
                   +l +lg  +eA+ l +++
  KKY20803.1 222 LYVLSKLGKHEEAKGLAADI 241
                 34566777777777666555 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 0.00018
      TPR_19  16 qalqedpknaearllLAeallalgqldeAealLd 49 
                   l++ p++  + llL++++++ ++   A+ +L+
  KKY20803.1 359 PKLEQWPDDVGLVLLLVQLYMSYNNASSAIGTLE 392
                 44899**************************997 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 1.8
      TPR_19  23 k...naearllLAeallalgqldeAealLdal 51 
                 +   n+ + + L+ ++  +g+ +  e+ L+++
  KKY20803.1 406 DlryNPGLIATLIALYKVQGRKAHVEEELNKA 437
                 35568999999999999999999888888875 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.11
      TPR_19   8 aeAlalleqalqedpknaearllL 31 
                 ++A ++++ + +++p++ e+ +++
  KKY20803.1 471 ESAREIFSTLHKQYPEDKEINAGY 494
                 578888888888888888887776 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   1.5    0.0089        13       8      43 ..      24      59 ..      19      69 .. 0.90
   2 ?    1.2   0.0      0.31   4.7e+02      23      42 ..      71      90 ..      65      95 .. 0.89
   3 !    6.9   0.0    0.0054       8.1       7      57 ..     353     403 ..     347     408 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0089
      TPR_20  8 laeleaalaanpddldarldlAlallaagryeeAle 43
                l++  a+l++n++d +a+++   all+  ry+eAl+
  KKY20803.1 24 LSSANADLKKNKADSQAQHAKVVALLKSDRYDEALQ 59
                5677899***************************96 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.31
      TPR_20 23 darldlAlallaagryeeAl 42
                +arl+l+  l++ gr eeA+
  KKY20803.1 71 KARLELSYTLYKVGRLEEAA 90
                799***************97 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0054
      TPR_20   7 elaeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkwed 57 
                   ++l  +l++ pdd+ + l l +++++ ++   A+  L +++kr  + e 
  KKY20803.1 353 AAKSLVPKLEQWPDDVGLVLLLVQLYMSYNNASSAIGTLESFFKRLDSVEG 403
                 56678889********************************99999777655 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.17   2.5e+02       3      25 ..      40      62 ..      38      64 .. 0.82
   2 ?    5.0   0.2     0.023        35       3      33 ..      72     102 ..      70     103 .. 0.87
   3 ?   -0.7   0.0       1.5   2.2e+03       2      16 ..     113     127 ..     112     127 .. 0.83
   4 ?    3.4   0.0     0.072   1.1e+02       8      21 ..     222     235 ..     217     235 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.17
                HHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_8  3 ayynlgsiylklgdyeeAkeyye 25
                a + +  ++lk  +y+eA +++ 
  KKY20803.1 40 AQHAKVVALLKSDRYDEALQFFD 62
                66677789999********9996 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.023
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 a + l++++ k g++eeA ++  ka + + +
  KKY20803.1  72 ARLELSYTLYKVGRLEEAASVAAKAQTRAAK 102
                 667899***************9999887766 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.5
                 CHHHHHHHHHHHTT- CS
       TPR_8   2 eayynlgsiylklgd 16 
                 ea +  +s+y++l+d
  KKY20803.1 113 EAFLEAASLYDELKD 127
                 677888999*99997 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.072
                 HHHHHHTT-HHHHH CS
       TPR_8   8 gsiylklgdyeeAk 21 
                  ++++klg++eeAk
  KKY20803.1 222 LYVLSKLGKHEEAK 235
                 57899********8 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.043        65       2      24 ..      39      61 ..      38      63 .. 0.87
   2 ?    4.8   0.0     0.036        54       3      24 ..      72      93 ..      71      95 .. 0.88
   3 ?   -0.6   0.0       2.1   3.2e+03      13      24 ..     182     193 ..     181     195 .. 0.82
   4 ?   -2.5   0.0       8.6   1.3e+04      13      21 ..     227     235 ..     224     239 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.043
       TPR_4  2 rallaLArallalGdldeArall 24
                +a++a   all   ++deA++ +
  KKY20803.1 39 QAQHAKVVALLKSDRYDEALQFF 61
                68889999************976 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.036
       TPR_4  3 allaLArallalGdldeArall 24
                a+l L  +l+  G+l+eA+ ++
  KKY20803.1 72 ARLELSYTLYKVGRLEEAASVA 93
                788899999*********9987 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 2.1
       TPR_4  13 alGdldeArall 24 
                 a+G++ +A  ll
  KKY20803.1 182 ARGEFGQADVLL 193
                 89*****98777 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 8.6
       TPR_4  13 alGdldeAr 21 
                  lG ++eA 
  KKY20803.1 227 KLGKHEEAK 235
                 6899***96 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.5   0.00081       1.2      20      78 ..      35      92 ..      21      96 .. 0.83
   2 ?    9.6   2.4   0.00068         1       5      80 ..      54     123 ..      50     125 .. 0.83
   3 ?    4.5   0.4     0.028        42      18      51 ..      94     128 ..      91     137 .. 0.80
   4 ?   -1.7   0.0       2.3   3.5e+03      32      48 ..     224     240 ..     193     264 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00081
                H--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHH CS
      ANAPC3 20 tespedayllAlclylngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAiaa 78
                + ++++ +++  +l+++ +y++A++++++   +s   ++r+ +  +l+k +++eeA ++
  KKY20803.1 35 KADSQAQHAKVVALLKSDRYDEALQFFDTV-GDSLKDKARLELSYTLYKVGRLEEAASV 92
                556667777778999***************.5566669******************987 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00068
                 HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3   5 yknAiflaerllaaetespedayllAlclylngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 y++A+ +++ +   ++  +++++ l+++ly+ g+ ++A  ++ ka    ++ ++  ++Aq+l+  + + eA ++++
  KKY20803.1  54 YDEALQFFDTVG--DSLKDKARLELSYTLYKVGRLEEAASVAAKA----QTRAAKHVAAQSLYRSEAFLEAASLYD 123
                 555555555555..56667889999********************....**************9999999988776 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.028
                 HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SH CS
      ANAPC3  18 aetespedayllAlclylngqykrAyellrka.kl 51 
                 a+++   + +  A++ly+++ + +A  l++++ + 
  KKY20803.1  94 AKAQTRAAKHVAAQSLYRSEAFLEAASLYDELkDG 128
                 677788888999**************999998555 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 2.3
                 HHHHTT-HHHHHHHHHC CS
      ANAPC3  32 clylngqykrAyellrk 48 
                 +l ++g++++A  l+ +
  KKY20803.1 224 VLSKLGKHEEAKGLAAD 240
                 55566666666666555 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0058       8.6      10      25 ..      47      62 ..      46      64 .. 0.88
   2 ?   -1.5   0.0       1.8   2.7e+03      10      20 ..      79      89 ..      78      91 .. 0.87
   3 ?    1.1   0.0      0.26   3.9e+02      10      20 ..     224     234 ..     223     235 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0058
                HHHHTT-HHHHHHHHH CS
       TPR_1 10 ayfklgkydeAleyye 25
                a++k  +ydeAl++++
  KKY20803.1 47 ALLKSDRYDEALQFFD 62
                78999*********97 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.8
                HHHHTT-HHHH CS
       TPR_1 10 ayfklgkydeA 20
                +++k g+++eA
  KKY20803.1 79 TLYKVGRLEEA 89
                689*******9 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.26
                 HHHHTT-HHHH CS
       TPR_1  10 ayfklgkydeA 20 
                 ++ klgk++eA
  KKY20803.1 224 VLSKLGKHEEA 234
                 678*******9 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0       0.4   5.9e+02       3      25 ..      40      62 ..      38      65 .. 0.83
   2 ?    3.3   2.1      0.12   1.8e+02       2      38 ..      71     107 ..      70     124 .. 0.90
   3 ?   -0.8   0.1       2.6   3.9e+03      13      31 ..     182     200 ..     180     211 .. 0.77
   4 ?    0.5   0.0      0.97   1.5e+03       8      27 ..     222     241 ..     219     251 .. 0.81
   5 ?    1.8   0.0      0.37   5.5e+02      28      44 .]     361     377 ..     341     397 .. 0.78
   6 ?    2.6   0.0      0.21   3.1e+02      17      41 ..     470     494 ..     451     496 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.4
      TPR_14  3 allalaeallalGdpdeAiallr 25
                a+ a + all ++++deA++ ++
  KKY20803.1 40 AQHAKVVALLKSDRYDEALQFFD 62
                666777899**********9886 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.12
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeaw 38 
                 +a+l+l   l+  G+++eA+ ++ +a  +a ++ +a+
  KKY20803.1  71 KARLELSYTLYKVGRLEEAASVAAKAQTRAAKHVAAQ 107
                 58999*********************99998888887 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 2.6
      TPR_14  13 alGdpdeAiallrralala 31 
                 a+G++ +A  ll+ra +l+
  KKY20803.1 182 ARGEFGQADVLLKRARELC 200
                 6899999999999998866 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.97
      TPR_14   8 aeallalGdpdeAiallrra 27 
                 + +l  lG+++eA  l+ ++
  KKY20803.1 222 LYVLSKLGKHEEAKGLAADI 241
                 578999*******9998876 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.37
      TPR_14  28 lalaPddaeawlllaql 44 
                 l+++Pdd  + lll+ql
  KKY20803.1 361 LEQWPDDVGLVLLLVQL 377
                 56777777777777765 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.21
      TPR_14  17 pdeAiallrralalaPddaeawlll 41 
                 ++ A++++  + +++P+d e++  +
  KKY20803.1 470 LESAREIFSTLHKQYPEDKEINAGY 494
                 688***************9987655 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.22   3.3e+02      32      59 ..      36      63 ..      27      66 .. 0.77
   2 ?    9.8   2.0   0.00084       1.3       6      64 ..      47     100 ..      42     104 .. 0.78
   3 ?    1.1   0.2      0.44   6.6e+02      41      61 ..     106     126 ..     104     133 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.22
      TPR_16 32 daaeAllllgdaalrqgrlaeAaalyra 59
                ++ +A+ ++ +a+l+  r++eA+++++ 
  KKY20803.1 36 ADSQAQHAKVVALLKSDRYDEALQFFDT 63
                5556777777899999999999999975 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00084
      TPR_16   6 aalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 a+l++ +yd+A+  ++++ ++         A+l+l   +++ grl+eAa + ++a++ a
  KKY20803.1  47 ALLKSDRYDEALQFFDTVGDSL-----KDKARLELSYTLYKVGRLEEAASVAAKAQTRA 100
                 6788888888885554444444.....679*******************9999998655 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.44
      TPR_16  41 gdaalrqgrlaeAaalyraal 61 
                 +++++r   + eAa ly+++ 
  KKY20803.1 106 AQSLYRSEAFLEAASLYDELK 126
                 677777778888888887776 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0059       8.7      10      25 ..      47      62 ..      46      64 .. 0.89
   2 ?    5.9   0.2     0.011        17       6      27 ..      75      96 ..      71     103 .. 0.86
   3 ?    0.4   0.2      0.63   9.4e+02       7      26 ..     105     124 ..     100     126 .. 0.84
   4 ?    0.5   0.0       0.6     9e+02       5      32 ..     174     201 ..     170     203 .. 0.83
   5 ?   -0.0   0.0      0.86   1.3e+03      10      21 ..     224     235 ..     223     238 .. 0.85
   6 ?   -1.5   0.0       2.5   3.8e+03      15      32 ..     308     325 ..     305     327 .. 0.82
   7 ?   -2.7   0.1       6.3   9.3e+03      14      25 ..     431     442 ..     420     443 .. 0.57
   8 ?   -2.6   0.0       5.6   8.4e+03      18      34 .]     471     487 ..     470     487 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0059
       TPR_2 10 ayyklgdyeeAleafe 25
                a++k+++y+eAl++f+
  KKY20803.1 47 ALLKSDRYDEALQFFD 62
                799***********97 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.011
       TPR_2  6 nlGlayyklgdyeeAleafekA 27
                +l + +yk g++eeA+    kA
  KKY20803.1 75 ELSYTLYKVGRLEEAASVAAKA 96
                7899***********9988888 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.63
       TPR_2   7 lGlayyklgdyeeAleafek 26 
                  ++++y++  + eA+ ++++
  KKY20803.1 105 AAQSLYRSEAFLEAASLYDE 124
                 58999999999999999987 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.6
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldP 32 
                 +n ++   ++g++ +A  ++++A el+ 
  KKY20803.1 174 FNAACGSVARGEFGQADVLLKRARELCR 201
                 77777888999************99986 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.86
       TPR_2  10 ayyklgdyeeAl 21 
                 ++ klg++eeA+
  KKY20803.1 224 VLSKLGKHEEAK 235
                 6789*******7 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 2.5
       TPR_2  15 gdyeeAleafekAleldP 32 
                  +y+  ++   kA++ +P
  KKY20803.1 308 RKYDGVKRSTTKAIKSNP 325
                 57888889999****999 PP

  == domain 7  score: -2.7 bits;  conditional E-value: 6.3
       TPR_2  14 lgdyeeAleafe 25 
                   ++++A+ +++
  KKY20803.1 431 EEELNKAATYWR 442
                 455667777766 PP

  == domain 8  score: -2.6 bits;  conditional E-value: 5.6
       TPR_2  18 eeAleafekAleldPnn 34 
                 e A+e f    + +P++
  KKY20803.1 471 ESAREIFSTLHKQYPED 487
                 789999*9999999986 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.033        49       6      27 ..      41      62 ..      34      64 .. 0.71
   2 ?    3.1   1.9     0.081   1.2e+02       8      59 ..      75     126 ..      68     127 .. 0.83
   3 ?   -0.5   0.0         1   1.5e+03      57      76 ..     182     201 ..     163     202 .. 0.77
   4 ?    0.4   0.1      0.53   7.9e+02      24      35 ..     191     202 ..     179     238 .. 0.51

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.033
      TPR_12  6 lnnlaavlrrlgrydeAlelle 27
                ++   ++l++  rydeAl++++
  KKY20803.1 41 QHAKVVALLKSDRYDEALQFFD 62
                5556667777888888888776 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.081
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralg 59 
                 +l  +l++ gr++eA +   ka  +a +    ++++ +++    + ly++l+
  KKY20803.1  75 ELSYTLYKVGRLEEAASVAAKAQTRAAKHVAAQSLYRSEAFLEAASLYDELK 126
                 5778899999999999999999999977778899999999999999998876 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1
      TPR_12  57 algryeeAlelleealaiae 76 
                 a+g++ +A  ll++a ++++
  KKY20803.1 182 ARGEFGQADVLLKRARELCR 201
                 67888888888888888876 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.53
      TPR_12  24 ellekaleiarr 35 
                  ll++a+e++r 
  KKY20803.1 191 VLLKRARELCRH 202
                 444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.50
# Mc/sec: 3961.31
//
Query:       KKY20804.1  [L=580]
Description: putative c6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00082   18.5   0.1     0.0014   17.8   0.1    1.3  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   7.6e-08    0.0014     128     230 ..      67     178 ..      45     229 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7.6e-08
  Fungal_trans 128 gLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlwesddaseetlvetk..............lsn 210
                   gLh+++++ +     ++ + e e+rrR+ w+ + l ++++++       ++ q ++++P + dd+ + d+  + t +                   +
    KKY20804.1  67 GLHDESNWPK-----NVGFVELEERRRVIWSMYTLNVYTSVIWAGIMRVREGQADVAYPTEVDDEMFDDNGIKPTEPTSAtvsrqgsptsanapATK 158
                   8998888888.....488999********************98666645*********************999999876677777777777776555 PP

  Fungal_trans 211 eeksrkiasfllaLkkilsk 230
                   e +  +  +f  +L +il +
    KKY20804.1 159 ENCWISGWNFTTDLYRILEH 178
                   55555566666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 3533.73
//
Query:       KKY20805.1  [L=512]
Description: putative lipase class 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-21   76.7   0.0    3.8e-21   75.4   0.0    1.6  2  Lipase_3       Lipase (class 3)
     0.0036   17.9   0.0     0.0065   17.1   0.0    1.5  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
       0.14   11.9   0.0       0.25   11.0   0.0    1.3  1  PGAP1          PGAP1-like protein


Domain annotation for each model (and alignments):
>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.0   6.3e-25   3.8e-21       1     137 [.     203     352 ..     203     356 .. 0.90
   2 ?   -3.1   0.0       1.1   6.4e+03      92     107 ..     473     488 ..     468     496 .. 0.75

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 6.3e-25
                 EEEE----------------EEE-HHHH-GTT-EEEHHHHHHHHS-HHHHHHHHHHHHHHHTT...-EEEEEEEETHHHHHHHHHHHHHHHTT-SS... CS
    Lipase_3   1 vvafRGtesakdwltdldfslteakellekeggkvhsgfleayeeslreqvlkelkrllekyp...eysivvtGHSLGgalAlLaaldlvengene... 93 
                 v+a+RGt++  dw+ +l+ ++t+ +++l+++g   h gfl++++ ++   v + l++lle++p   + s+ +tGHS Gga+A+L+  ++ ++  ++   
  KKY20805.1 203 VFAIRGTQTFMDWAVNLHSEPTSPTDFLDDQGNLCHAGFLDVAR-KMVRPVASRLRQLLEEKPnrsSCSLLITGHSAGGAVASLLFCHMLSESVTSels 300
                 689**************************99*************.******************77779**************9988888888777779* PP

                 .....---EEEEEES----B-HHHHHHHHT-TTE...EEEEEEETT--GGG- CS
    Lipase_3  94 .....kkkvtvvtfGqPrvgnkefaklvdsqlnk...kvlrvvntnDivPrl 137
                       k+v ++tfG+P +    + k  +++ ++    +++++n++D+vPr+
  KKY20805.1 301 vlsgcFKRVHCITFGAPPISYLPLDKPANRERQYrksLFISFMNEGDPVPRA 352
                 **99999************8888888777555445467899*********96 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.1
                 SS---EEEEEES---- CS
    Lipase_3  92 nekkkvtvvtfGqPrv 107
                 ++++++++v+fG P +
  KKY20805.1 473 TTDEQLRAVVFGDPLM 488
                 5578899999999975 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.1e-06    0.0065      56     151 ..     248     376 ..     202     497 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.1e-06
                    HHCCTT..............TTSEEEEEETCHHHHHHHHHHCC...................EEEEES-......----TTTS----TTHHHHHH. CS
  Abhydrolase_6  56 lldelaa............gggpvvlvGHSlGGalalaaapla.................lvvgvlldppp....talpagllaaalelllalla. 117
                    +++ +a+            + +   + GHS GGa+a++++ +                  +v+++   +pp    +   ++ +a + +++++ l  
     KKY20805.1 248 MVRPVASrlrqlleekpnrSSCSLLITGHSAGGAVASLLFCHMlsesvtselsvlsgcfkRVHCITFGAPPisylP---LDKPANRERQYRKSLFi 340
                    3333333555555566656666779*************88888899999999988888877777666666643331...22222222222222221 PP

                    ........TT-C..CCCHCCHS-HSCCCCHHHCCCCHCHCCCGH CS
  Abhydrolase_6 118 ........llrl..lawlsreplprlfladedadaawrarlarl 151
                            +  +   a+++  +l +l+ +     +a +++ ++l
     KKY20805.1 341 sfmnegdpVP-RadRAFVK--SLLELYAS-----PAPQPASRPL 376
                    1111111111.11122221..22222222.....3333333333 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.2e-05      0.25      70     111 ..     247     289 ..     227     303 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.2e-05
       PGAP1  70 eylndaIkyIlslysss.ekeptsviliGHSmGGivaraaltl 111
                 +++  +  ++ +l +++ ++   s+++ GHS GG va +++ +
  KKY20805.1 247 KMVRPVASRLRQLLEEKpNRSSCSLLITGHSAGGAVASLLFCH 289
                 5666666666677755514556799999*********776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 3165.62
//
Query:       KKY20806.1  [L=961]
Description: hypothetical protein UCRPC4_g04079 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.032   14.0   0.0       0.14   12.0   0.0    2.1  1  SRA1      Steroid receptor RNA activator (SRA1)
        7.3    6.9   6.6       0.43   10.8   0.3    2.2  2  E7        E7 protein, Early protein


Domain annotation for each model (and alignments):
>> SRA1  Steroid receptor RNA activator (SRA1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.5e-05      0.14      11     104 ..     476     572 ..     467     577 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.5e-05
        SRA1  11 pppPsveavklsskeekslsesesepeledvlsvLnqaLeaCrksvkkqvcddve.....krLrlledsWksGkLslpvrkrmevLsqelqskrWdaaD 104
                 + pP   a++ s ++   ++++e + +l++ +s L++ +++ r+ v ++v + ++     k++++l+++ ++ kL+  v ++++ L++  ++k +d  D
  KKY20806.1 476 STPPYL-AARDSIEQLIIQKVAELDQKLNQGFSTLHTRIDNSRDIVIDKVLNAISnkvtaKQIEILDEQHQTLKLTKDVASQVKSLVEG-SKKDFDKVD 572
                 445554.666666667788999*****************************9996333336789******************9999854.555565555 PP

>> E7  E7 protein, Early protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   1.4         2   1.8e+04      31      41 ..     144     154 ..     124     174 .. 0.50
   2 ?   10.8   0.3   4.8e-05      0.43      23      86 ..     541     604 ..     516     606 .. 0.72

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 2
                 XXXXXXXXXXX CS
          E7  31 eeeeeedeptl 41 
                 ee e + + ++
  KKY20806.1 144 EESELTINAVQ 154
                 22222221212 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 4.8e-05
                 -----XXXXXXXXXXXXXXXXXXXXEE.EEEEEEXTTTXXEEEEEEEEXHHHHHHHHHHHHTTX CS
          E7  23 eeelesedeeeeeedeptlkdktprrpgYavevaCprCeqklrlvvlateegirqleqlLvgsL 86 
                 +e+ + ++ + +  ++++   +  ++   +v+ +C r eqk+r+ v  t + ir+ +++L++ L
  KKY20806.1 541 DEQHQTLKLTKDVASQVKSLVEGSKKDFDKVDKSCLRTEQKIRVDVNKTASEIRAVNDTLIKLL 604
                 444555555555555555555666666557*****************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (961 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1545  (0.0861732); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.35s 00:00:01.22 Elapsed: 00:00:00.52
# Mc/sec: 5520.82
//
Query:       KKY20807.1  [L=1533]
Description: putative ubiquitin c-terminal hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-72  241.9   0.0    1.2e-71  241.2   0.0    1.3  1  UCH       Ubiquitin carboxyl-terminal hydrolase
    1.3e-14   54.6   0.0    4.9e-14   52.7   0.0    2.1  1  DUSP      DUSP domain
    6.2e-10   39.2   6.9    0.00073   19.2   0.0    4.0  4  UCH_1     Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.2   0.0     2e-75   1.2e-71       1     257 []     499    1284 ..     499    1284 .. 0.99

  Alignments for each domain:
  == domain 1  score: 241.2 bits;  conditional E-value: 2e-75
                  -EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHH.SH-CCEE--HHHHHHHHHHSGGGTSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH    1 tGlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkell.kskskavsPkklkktlsklaksfsgyk 96  
                  +GlsNlGntCymns+lQc+ s++el++y+l+       + +kk+ln snpl ++ge+a+a+ +++ +++  s++++++P+++k+t++k+ ++fsgy 
  KKY20807.1  499 VGLSNLGNTCYMNSALQCVRSVEELSQYFLH-------DVYKKDLNPSNPLAHNGEVARAYGNFLLQIYgDSSQSSFAPRHMKQTIGKYGPNFSGYG 588 
                  6******************************.......9999***************************9889************************ PP

                  TCEHHHHHHHHHHHHHHHHCC........................HCCCHHHHHHCCCTTSHHHHHH-EEEEE........................ CS
                  xxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxxx........................ RF
         UCH   97 qqDaqEflaflLdqlhedlnr........................evaeekwkkhlkrndslitdlfegqlks........................ 145 
                  qqD+qEfl flLd+l+edlnr                        e+a+++w+  + rnds+itdlf g++ks                        
  KKY20807.1  589 QQDSQEFLLFLLDGLQEDLNRvlkkpyiekpdstdemvhnpklleEMADKCWDIYTARNDSVITDLFAGMYKStlhcpvcdkvsiifdpfnnltlql 685 
                  ********************************************99999************************************************ PP

                  ................................................................................................. CS
                  ................................................................................................. RF
         UCH  146 ................................................................................................. 145 
                                                                                                                   
  KKY20807.1  686 pvennwskevfffplhgkpirldvdidknasikqlkeyvgkrmnadatkmimaeiykcklyklfenpisiaeagiqpadnigifeledvptnynadk 782 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
         UCH  146 ................................................................................................. 145 
                                                                                                                   
  KKY20807.1  783 ysrrstfssqrdedipsadspaadklvvsvfnrlskpgaprsqqkqiyafpsfvvftkeearnyesvqkkllaavasmttrdilneenpvfhlankd 879 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
         UCH  146 ................................................................................................. 145 
                                                                                                                   
  KKY20807.1  880 eeisedpdavsmndddnssdsnhvhaksvegeeglvdvtmanatpagtstdgepdlpatipkvlrpgapiplalqnmyeikfirtgemiptgissfd 976 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
         UCH  146 ................................................................................................. 145 
                                                                                                                   
  KKY20807.1  977 eskdypsistrmpkpasrrskgsseisvssdedadelspsdqmqlsgygsdvenkdhisdsdhdlpspdsllqpqkvkthsqkgrevagktehleye 1073
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
         UCH  146 ................................................................................................. 145 
                                                                                                                   
  KKY20807.1 1074 gplvgpgdaillewtpeahdalfggsegssnelrgtgtwlnvemfkdeelaakraqrqsrrrkgitlddcldefgkeeilsendawycprckehrra 1170
                  ************************************************************************************************* PP

                  ..EEEEEEB-SEEEEEEESEEETEE.EEE--SEEB--.SEEE-GGGBSS-BTTS-TCS-BEEEEEEEEEESCTTSEEEEEEEECTTTTEEEEEETTE CS
                  ..xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH  146 ..klklkrlPeiLiihlkRfsynss.ksKlntkvefp.eeldlssylaeekkkkteekkkYeLiavvvHsGslssGHYvayiknekngkWykydDet 238 
                    k +l+++P+iL++hlkRfs n++ ++Kl+  v++p e ld+s+ +  ++k    ++ +Y+L+av +H+G+l++GHY+ay+kn  +++Wy y+D++
  KKY20807.1 1171 skKFELWKTPDILVMHLKRFSSNRNfRDKLEIMVDYPvEGLDMSNRVLVQEKG---KEVIYDLFAVDNHYGGLGGGHYTAYAKNFFDNNWYEYNDSH 1264
                  *************************************559****988844444...4678************************************* PP

                  EEEE-HHCCCTT.CEEEEEE CS
                  xxxxxxxxxxxx.xxxxxxx RF
         UCH  239 vkevkeeeevls.sayiLfY 257 
                  v++ +++++v + +ay+LfY
  KKY20807.1 1265 VSKRSDPQAVVTpAAYLLFY 1284
                  *****9999999******** PP

>> DUSP  DUSP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   8.2e-18   4.9e-14       2      89 ..     165     266 ..     164     269 .. 0.80

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 8.2e-18
                 -EEEEEEHHHHHHHHHHHTTSTTSTTTTCGC...S--SB-CGGGB..................TTTEB-SS--BTTTEEEEEHHHHHHHHHHC-...T- CS
        DUSP   2 qkyyliskkWleqwksyvsydavteekesgs...kpgpIdnsdll.......kappltk....engrlkpnlqegrdyeivpeevwkfLvqwYg...gg 83 
                 qk +++s+kWl++     s+ a+ e+ +++    ++gp+dnsd++       k   l++        lkp lq g dy i+p+e+w+++vqwYg   ++
  KKY20807.1 165 QKGFIVSQKWLNRVLARSSVGASGEKFDKTAaegEIGPVDNSDIVmvteesgK---LKDeagePFVFLKPGLQIGDDYQILPQEAWDLIVQWYGiskKS 260
                 789**********9999988888777444443335**********98774321...33367899******************************88666 PP

                 ---EEE CS
        DUSP  84 peikrk 89 
                 p i r+
  KKY20807.1 261 PIITRY 266
                 666665 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   2.2      0.44   2.6e+03     116     165 ..      69     150 ..      11     184 .. 0.54
   2 !   11.1   0.2   3.6e-05      0.21       1      36 [.     499     534 ..     499     545 .. 0.89
   3 !    9.7   0.0   9.5e-05      0.57     103     207 ..     593     750 ..     549     779 .. 0.77
   4 !   19.2   0.0   1.2e-07   0.00073     191     320 .]    1155    1265 ..    1104    1265 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.44
                 xxxxxxxxx.................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 116 elketkkns.................................seeesaieqllgtkaettirclkCgseksrksstlvldlky 165
                 ++ +++ n+                                  +e+s+i+  ++t+++t+++  +  + +s +s+t ++d + 
  KKY20807.1  69 QEDQSRGNEqtpkakqqnrgprisvddsaihestpkshaqtaPSETSTIN-TVSTNQSTVSTAPTSLKSSSSPSDTPSIDEQV 150
                 33333222233344444444555444444444444433444444445555.55577777777776666667777777765433 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 3.6e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   1 sGLEnhivnsYlNslLQvlyfipplrnlalshlake 36 
                 +GL n  +++Y+Ns LQ+ + +++l++  l+ + k+
  KKY20807.1 499 VGLSNLGNTCYMNSALQCVRSVEELSQYFLHDVYKK 534
                 7*************************9999887655 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 9.5e-05
                 xxxxxxxxxxxxxxxxxxxxxx..............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x..x RF
       UCH_1 103 qsfnrflldqlekelketkkns..............................seeesaieqllgtkaettirclkCgseksrksstlvldlkyP.k..p 168
                 q+f  flld l+++l++  k++                              ++++s i++l++  +++t++c  C + +   + +  l l+ P +   
  KKY20807.1 593 QEFLLFLLDGLQEDLNRVLKKPyiekpdstdemvhnpklleemadkcwdiytARNDSVITDLFAGMYKSTLHCPVCDKVSIIFDPFNNLTLQLPvEnnW 691
                 77999************999889*****************************9999************************9999999999988864341 PP

                 xxx....................xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
       UCH_1 169 sne....................kkeakvtfasilksslerektt..rawCekCkryqpte 207
                   +                    k+++ +++++++ + ++ + t+   a   kCk y+ +e
  KKY20807.1 692 --SkevfffplhgkpirldvdidKNASIKQLKEYVGKRMNADATKmiMAEIYKCKLYKLFE 750
                 ..13455555555566666666666666777888887777744441144455677777666 PP

  == domain 4  score: 19.2 bits;  conditional E-value: 1.2e-07
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  191 kttrawCekCkryqpteqrktvknlPpvLalnakleeeeelelwktknwlpleiklsldedknleeklkeerekakaekeikvYeLqsvvvhigdsk 287 
                  ++    C++Ck+    +++  + + P++L++++k+++++        + +  ++++++d     e  + ++r   +++ + ++Y+L++v  h g + 
  KKY20807.1 1155 ENDAWYCPRCKEHRRASKKFELWKTPDILVMHLKRFSSN--------RNFRDKLEIMVDYPV--EGLDMSNRVLVQEKGKEVIYDLFAVDNHYG-GL 1240
                  344567*****************************9887........566666666655543..23333344445677899*************.77 PP

                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  288 esghLvslvkvaekelerdppesqWylFNDflV 320 
                    gh+ +++k           +++Wy  ND +V
  KKY20807.1 1241 GGGHYTAYAKNF--------FDNNWYEYNDSHV 1265
                  7*********43........3589******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       962  (0.0536561); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.45
# Mc/sec: 10218.19
//
Query:       KKY20808.1  [L=630]
Description: putative sorting nexin-41 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-16   60.7   0.0    7.8e-16   58.1   0.0    2.3  3  PX              PX domain
    1.2e-07   31.5  13.9    0.00082   19.0   3.0    2.1  2  Vps5            Vps5 C terminal like
     0.0056   17.0   0.0     0.0097   16.2   0.0    1.3  1  Peptidase_C10   Peptidase C10 family


Domain annotation for each model (and alignments):
>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   1.3e-19   7.8e-16       6     112 ..      94     201 ..      90     202 .. 0.91
   2 ?   -3.7   0.0       1.9   1.2e+04      32      53 ..     319     340 ..     300     347 .. 0.69
   3 ?   -1.7   0.0      0.45   2.7e+03      56      72 ..     441     462 ..     418     484 .. 0.69

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 1.3e-19
                 EEEEEEEEETTSSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSS......CTTSHHHHHHHHHHHHHHHHHHHTSC CS
          PX   6 vsvleretsgskkhsyylyevelktgakewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsv......rkkdeefiekrrkgLeeyLqrllnhp 98 
                 + ++++ ++  + + +++y+++++    e +v+RrYs+F +L+  L + +p+++iPp+P+k+++  +       k+d  +ie r+++L ++L+r+ ++ 
  KKY20808.1  94 IIITDAAKD-HGGGGFIVYTIRTG----EIEVRRRYSEFSSLRAALVNLHPTLIIPPIPEKHSMADYaakptrAKEDAGIIELRKRMLSVFLNRCRRMR 187
                 556666655.67788999999999....58********************************99988*****999************************ PP

                 HHHHSHHHHHHHHS CS
          PX  99 elrnsevlteFLev 112
                 e  ++ v  +FL++
  KKY20808.1 188 EVLEDGVWWRFLDP 201
                 ***********987 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.9
                 SSEEEEEEEHHHHHHHHHHHHH CS
          PX  32 akewtvkRrYsdFeeLhskLlr 53 
                 + e+  +R  +++ +L  +L +
  KKY20808.1 319 SVEKVNRRTLEHLSKLSADLME 340
                 5666677888888888888765 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.45
                 T.....TSTSTSSSTSGSSSSS CS
          PX  56 p.....rvkiPplPkkvlfgsv 72 
                       +++ P+ P+k+++++ 
  KKY20808.1 441 LdaylsGSIAPHSPPKRSVSNA 462
                 1445558899999999998873 PP

>> Vps5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   3.2   2.6e-07    0.0016      21     165 ..     297     441 ..     291     446 .. 0.90
   2 !   19.0   3.0   1.4e-07   0.00082     159     232 ..     546     619 ..     542     623 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.6e-07
        Vps5  21 EqDewFedkkqeldslesqLk.kLykaiellvsqrkelasataelakslesLaslelskslsralsqlaeveerikellerqaeqdvltLgetideylr 118
                 + D++F++ +++  +le  L+ +++k+     ++ ++l++ + el++  + ++ +e s+++++a++++ +   +    +e+ + + + +++e ++e  +
  KKY20808.1 297 DLDPYFINFEASTRELELLLQgSVEKVNRRTLEHLSKLSADLMELGARYNGFSLSEQSATVASAIERIGQAVDNTYIETEELSAALNANFAEPMRESAQ 395
                 56999999999999999999945777777889999**************************************************************** PP

        Vps5 119 ligsvksvfeqRvklwqkwqsaeqelskkkeqleKlekaaksqqdkl 165
                 + g v++v+  R     + +   +el+kkk+ l+ le++ + + ++l
  KKY20808.1 396 FAGVVRNVLRYRILKRVQQEMTRDELEKKKALLDSLERS-ELEAKRL 441
                 *********999888888888999*******99999988.4444555 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1.4e-07
        Vps5 159 ksqqdklqqlkkeveelerkvqeaekeFeeisetikkElerFetervedfknvvekyLesaiesqkevielWet 232
                 +s++d++ + k+++ +le+ ++  ek+ ++ s  i k+l+rF++++ +d+++ ++ y +  ie  k+ +e W +
  KKY20808.1 546 RSRRDQIGKTKESLVQLEQALDVSEKDVKDASLGILKDLQRFQKDKEKDIQRYMIAYAKCHIEWAKKNLETWSE 619
                 57899*******************************************************************86 PP

>> Peptidase_C10  Peptidase C10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.6e-06    0.0097      58     154 ..     330     428 ..     309     439 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.6e-06
                    -GGG-B--TTTS-SB--S-S-HHHHHHHHHHHHHHHHHTT---SS..S-----HHHHHHHHHHTS---TT-EEE-GGGS-HHHHHHHHHHHHHTT- CS
  Peptidase_C10  58 dlseesldwdnmkesydksateeqanavakLmrdvGvavkmeYtp..egsgalssnvvkalndyfgYdkeisllsrsnysssewedlvkneleagr 151
                    +ls+ s d  ++  +y+  + +eq+ +va+ +  +G+av+ +Y +  e s al+ n+++ +++  +++  ++++ r ++ ++ ++++ ++ele++ 
     KKY20808.1 330 HLSKLSADLMELGARYNGFSLSEQSATVASAIERIGQAVDNTYIEteELSAALNANFAEPMRESAQFAGVVRNVLRYRILKRVQQEMTRDELEKKK 425
                    4555566777777899988999999******************8877899***************************99999999*******9987 PP

                    -EE CS
  Peptidase_C10 152 pvl 154
                     +l
     KKY20808.1 426 ALL 428
                    765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       919  (0.0512577); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4568.53
//
Query:       KKY20809.1  [L=252]
Description: putative hemerythrin hhe cation binding domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-12   48.4   0.1    2.8e-12   47.4   0.1    1.5  1  Hemerythrin    Hemerythrin HHE cation binding domain
  ------ inclusion threshold ------
      0.049   13.6   0.6      0.093   12.7   0.6    1.4  1  Pol_alpha_B_N  DNA polymerase alpha subunit B N-terminal
       0.14   12.1   0.8       0.45   10.5   0.8    1.8  2  DUF1796        Putative papain-like cysteine peptidase (DUF17


Domain annotation for each model (and alignments):
>> Hemerythrin  Hemerythrin HHE cation binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.1   4.7e-16   2.8e-12       3     128 ..      33     160 ..      31     163 .. 0.90

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 4.7e-16
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH.CCC.HHHHHHHHHHHHHHHHHHHHHHHHCHTCG.. CS
  Hemerythrin   3 vealdeeHralrallerlraladaaaevhgalrklaelldelvdeleaHhaaEEellfPlledrpggravldvlereHdeirelleelrellkgle.. 98 
                  ++ + e H  + +l+++    a +++    + ++++++ +++vd +++Hh  EEe +fPlle  +g ++ l++   +H+++++ le+++ + k+ +  
   KKY20809.1  33 AQKMAEVHNTFIRLCNASYIQAPQIKPGTADASDFLTWNKYIVDMIHEHHDSEEEEMFPLLENLVGTPGILSGNVDQHQAFHDALEKFESYCKNTKad 130
                  6678899*********888888887777777**********************************************************999999977 PP

                  GSTCHHHHHHHHHHHHHHHHHHHHHHHTHH CS
  Hemerythrin  99 epsaaafaelleeladllreHiakEesilf 128
                  + s++ +++l eela +l  H+ +E + ++
   KKY20809.1 131 DYSSEKVRQLWEELAPALNKHLMDEPETFY 160
                  778888888****************88777 PP

>> Pol_alpha_B_N  DNA polymerase alpha subunit B N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.6   1.6e-05     0.093      23      89 ..     118     190 ..     113     200 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.6e-05
                    XXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX..........XXXXXXXXXXXX.XXXX........XXXX CS
  Pol_alpha_B_N  23 iKWEsfsikmkleeskkltlknlrefkkdlqdqlekra..........ksskkpktekksaaatpraaakngdlfgm 89 
                     K+Es++ ++k++   +++ +++r++ ++l+ +l+k+           k  + pk ++k   +  +aa+k++dlf +
     KKY20809.1 118 EKFESYCKNTKAD---DYSSEKVRQLWEELAPALNKHLmdepetfyrlK-DTDPKELQKLLDQFNKAAEKKTDLFTF 190
                    69******66655...799*****************5566677776532.367888888866666688999999987 PP

>> DUF1796  Putative papain-like cysteine peptidase (DUF1796)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.24   1.4e+03     127     149 ..      73      95 ..      61     102 .. 0.78
   2 ?   10.5   0.8   7.6e-05      0.45     104     165 ..     130     197 ..      77     200 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.24
     DUF1796 127 Firtviaenkakellellpqleq 149
                 +i+ +i+e++++e+ e++p le+
  KKY20809.1  73 YIVDMIHEHHDSEEEEMFPLLEN 95 
                 67777888887788888777666 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 7.6e-05
     DUF1796 104 kakfrrrirrfeallsspe......rkvlFirtviaenkakellellpqleqalrerta..dfrivlvvh 165
                   + ++++r++ + l+ +       ++ +F r    ++++ el++ll+q+++a +++t    f +++++ 
  KKY20809.1 130 DDYSSEKVRQLWEELAPALnkhlmdEPETFYRLK-DTDPK-ELQKLLDQFNKAAEKKTDlfTFGVLFLQA 197
                 3333444444333333222244466799***999.88888.************99999766676776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       983  (0.0548274); expected 358.6 (0.02)
Passed bias filter:                      814  (0.0454013); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 1648.70
//
Query:       KKY20810.1  [L=227]
Description: hypothetical protein UCRPC4_g04083 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1549.77
//
Query:       KKY20811.1  [L=397]
Description: hypothetical protein UCRPC4_g04084 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        2.2    7.9   9.7        3.3    7.4   9.7    1.3  1  Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   9.7   0.00018       3.3      83     147 ..     288     350 ..     195     356 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00018
                 -------------------------..-----------------......................--------------------- CS
  Cwf_Cwc_15  83 kekkeeeeeeeeeeakrrkeelleeareidaddedseeeeeeee......................eesdddsdsdsdddddedeta 147
                 + +   ++e+++++ +++k+                       +                      + sd dsd+ sd  dd+d+t+
  KKY20811.1 288 EIMIMMADEDHDQNMNKNKDI----------------------SltttstisviqadvdvktdpdfNPSDTDSDDYSD--DDDDDTE 350
                 222222222222222222222......................12333444444433333222222333334444444..4444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1027  (0.0572815); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 2376.98
//
Query:       KKY20812.1  [L=175]
Description: putative peptidyl-prolyl cis trans isomerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-24   86.4   0.0    2.8e-24   85.9   0.0    1.2  1  Rotamase        PPIC-type PPIASE domain
    6.1e-17   62.2   0.0    8.2e-17   61.8   0.0    1.1  1  Rotamase_3      PPIC-type PPIASE domain
    1.2e-10   41.3   1.6      3e-10   40.0   1.6    1.7  1  WW              WW domain
    6.6e-06   27.0   0.0    8.8e-06   26.6   0.0    1.3  1  Rotamase_2      PPIC-type PPIASE domain
  ------ inclusion threshold ------
       0.17   12.2   0.8       0.27   11.5   0.3    1.5  2  Glyco_hyd_101C  Glycosyl hydrolase 101 beta sandwich domain


Domain annotation for each model (and alignments):
>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.0   7.8e-28   2.8e-24       1      94 [.      73     174 ..      73     175 .] 0.99

  Alignments for each domain:
  == domain 1  score: 85.9 bits;  conditional E-value: 7.8e-28
                 EEEESSCCS.........E----HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-CT-B-S-EEETTEE CS
    Rotamase   1 HILlkvkek.........asekeraeakakaeeileqlksgedtFeelArkySddknsakngGdlgwvekgqlppefekaafslkkGeisepvetkfGf 90 
                 H+L+k+k++         +++++++ea + ++ + ++++s e t+ elA   S d++sa+++Gdlg++ kg++++efe+aaf+lk+Geis++v+t+ G+
  KKY20812.1  73 HLLVKHKDSrrpsswrenNITRTKDEALDIIQGYEQKIRSSETTLGELAASES-DCSSARKRGDLGFFGKGEMQKEFEDAAFALKPGEISGVVQTASGV 170
                 9****************************************************.********************************************* PP

                 EEEE CS
    Rotamase  91 hiik 94 
                 h+i+
  KKY20812.1 171 HLIQ 174
                 **98 PP

>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0   2.3e-20   8.2e-17      15     111 ..      68     174 ..      57     175 .] 0.94

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 2.3e-20
  Rotamase_3  15 svkvshIlistkg..........kesrseeeakakadsllaalk.egadFaalAkeySdDpaskenGGelgwftkgqmvkeFedavfslkkgeiskvvk 102
                  ++++h+l++ k+          + +r+++ea   ++   ++++   +   +lA+  Sd  +s+ + G+lg+f kg+m+keFeda+f+lk geis+vv+
  KKY20812.1  68 RIRAAHLLVKHKDsrrpsswrenNITRTKDEALDIIQGYEQKIRsSETTLGELAASESD-CSSARKRGDLGFFGKGEMQKEFEDAAFALKPGEISGVVQ 165
                 78999****999999**99999999*******************9999*******9997.778************************************ PP

  Rotamase_3 103 tdfGyHiik 111
                 t+ G+H+i+
  KKY20812.1 166 TASGVHLIQ 174
                 ********7 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   1.6   8.4e-14     3e-10       1      31 []       6      36 ..       6      36 .. 0.98

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 8.4e-14
                X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW  1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31
                LP++We + + + + +YY+N+ T+e+qW++P
  KKY20812.1  6 LPDDWEVRHSNSKNLPYYFNTATKESQWDPP 36
                8*******99999*****************9 PP

>> Rotamase_2  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   2.4e-09   8.8e-06      61     104 ..     132     174 ..      76     175 .] 0.66

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2.4e-09
  Rotamase_2  61 kaadlgifesasnlpeelakaafalkpgevsgpvetdngyyivk 104
                 k +dlg+f + + + +e+++aafalkpge+sg+v+t+ g ++++
  KKY20812.1 132 KRGDLGFFGKGE-MQKEFEDAAFALKPGEISGVVQTASGVHLIQ 174
                 233444554444.778***********************99975 PP

>> Glyco_hyd_101C  Glycosyl hydrolase 101 beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   7.5e-05      0.27      77     114 ..      15      51 ..       6      54 .. 0.77
   2 ?   -3.1   0.0       2.6   9.4e+03      17      19 ..      96      98 ..      83     125 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.5e-05
                     -GGG-EEEEEESS-SEEEEE--HHHHT.S--EEEEEET CS
  Glyco_hyd_101C  77 kadeeklYhynpkggtstwkLpekwakkssvklYkLtd 114
                     +++++  Y++n++  +s+w+ p++   ++++klY+ t+
      KKY20812.1  15 SNSKNLPYYFNTATKESQWDPPDGAD-TEKLKLYMATN 51 
                     3344455*************888865.599****9886 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.6
                    EE. CS
  Glyco_hyd_101C 17 eee 19
                    ++e
      KKY20812.1 96 KDE 98
                    222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.60
# Mc/sec: 883.36
//
Query:       KKY20813.1  [L=586]
Description: putative set domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-11   42.3   1.3    2.7e-09   37.6   0.1    2.9  2  SET       SET domain
  ------ inclusion threshold ------
      0.013   16.1   0.0        9.2    7.0   0.0    2.5  2  SAF       SAF domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.1     3e-13   2.7e-09     124     169 .]     190     232 ..      68     232 .. 0.65
   2 ?   -2.4   0.1       0.6   5.3e+03      31      31 ..     361     361 ..     297     475 .. 0.58

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 3e-13
                 TTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 124 plarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidYg 169
                   arf NH+C+ N  l ++     + ++v+A rdI+ GeE+t++Yg
  KKY20813.1 190 GPARFANHDCNANGRLVTRG---TDGMEVVAARDIEIGEEITVSYG 232
                 347*******99*9555555...**********************8 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.6
                 H CS
                 x RF
         SET  31 d 31 
                  
  KKY20813.1 361 A 361
                 0 PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0016        15       4      37 ..     137     171 ..     135     185 .. 0.86
   2 ?    7.0   0.0     0.001       9.2       4      17 ..     215     228 ..     215     240 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0016
                 EEESSTB-TT-BEBTTTEEEECECGG.CCTSCCCG CS
         SAF   4 vvAardikaGeviteddltlkrpias.hkigllpi 37 
                 + A+r ik+G+v+   + tl+ +  + +k  +l++
  KKY20813.1 137 IMARRRIKKGDVVKHLSGTLVPITEEeEKDLDLTK 171
                 5799**********999999999988888777766 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.001
                 EEESSTB-TT-BEB CS
         SAF   4 vvAardikaGevit 17 
                 vvAardi+ Ge+it
  KKY20813.1 215 VVAARDIEIGEEIT 228
                 8************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.54
# Mc/sec: 3256.11
//
Query:       KKY20814.1  [L=1033]
Description: putative peroxisomal membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1033 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.50
# Mc/sec: 6269.59
//
Query:       KKY20815.1  [L=402]
Description: putativedimethylglycine oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-42  145.1   0.1    4.5e-42  144.9   0.1    1.0  1  DAO              FAD dependent oxidoreductase
    3.2e-06   26.6   0.2      0.038   13.2   0.1    2.2  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
    0.00012   22.3   0.0    0.00082   19.6   0.0    2.2  2  TrkA_N           TrkA-N domain
    0.00026   21.1   0.0    0.00055   20.1   0.0    1.5  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
    0.00036   21.0   0.1       0.12   13.0   0.0    2.9  3  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
      0.001   19.1   0.3        1.9    8.5   0.0    2.3  2  NAD_binding_9    FAD-NAD(P)-binding
     0.0092   15.6   0.0      0.016   14.9   0.0    1.4  1  ApbA             Ketopantoate reductase PanE/ApbA
  ------ inclusion threshold ------
      0.015   15.5   0.0      0.032   14.5   0.0    1.6  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.045   13.0   0.0      0.078   12.2   0.0    1.3  1  Thi4             Thi4 family


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   0.1   2.3e-45   4.5e-42       2     350 ..      17     356 ..      16     358 .. 0.79

  Alignments for each domain:
  == domain 1  score: 144.9 bits;  conditional E-value: 2.3e-45
                 EEEECTSHHHHHHHHHHHHTT.....EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHH CS
         DAO   2 vviiGGGiiGlstAyeLarrg.....VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeee 95 
                 ++i+G+Gi+G++ Ay+L+  +     ++l+++++ +  g++g++ g++ + + + +       ls+ a++  re+ +  g   +++  G l + ++e++
  KKY20815.1  17 IAIVGAGIVGSALAYYLSSSPeinkpIVLIDRSSSPLNGSTGHAPGFVGQ-FNESE------VLSRLAIDTVREYVKIPG---GFDIIGGLEVVSSEQS 105
                 9****************998678889*******99999**********88.54355......466666666677776544...6999******999889 PP

                 HHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTT.ST..TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEE CS
         DAO  96 lealdkllallleagldaelldaeevrelepa.lp..gllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttp.gen 190
                   +l+++ ++++++gl a+l++++e+ el+p  l+  ++ +al++p++g + +   t++++++a+++Gve+++   +++++  dg+++g+  +++ g+ 
  KKY20815.1 106 IRRLKERCEMAKALGLSAQLISPHEAVELAPEiLKieDVDAALHFPGDGAASAGTITQFYQDEARKNGVEFIQA-DAKAIRTVDGQIVGI--DSKtGI- 200
                 9999999999999**********99******984466************************************9.*****9999******..666698. PP

                 EEEEE..EEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEE.EEESSE.....EETTCSS.TS CS
         DAO 191 daada..vVnaaGawsd.llgllkeldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvl.vGgtad.....eesgddd.pe 279
                   +da  vV+a+G+w+  l +l+  +++pi pv + +    p +e ++++      p +++   + +v++r  g  + +G+  +     e   +d+   
  KKY20815.1 201 --IDAgvVVLATGIWTAgLCNLD--IPIPIIPVAHPYTYGYP-KERTERK-----AP-WVRWPEH-HVYARNHGPYYgFGSYNHrpiylE--PEDTaIG 285
                 ..56667********98443333..35699**9888877745.5544443.....24.4554444.555555565554566554665332..2222224 PP

                 CSHHHHHHHHHHHHHHSGG..GCGEEEEEEEEEE.ETTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHH CS
         DAO 280 vdeedidellealrklfPq..lgdvlrkwaGlrp.lpdglpligetpgvkglylatGhsghGltlapatGklla 350
                     d+de l ++++++ +    d++ k+ G+ + +pd+lpl+g+ p v+gl++a+      +t+a+++++ l+
  KKY20815.1 286 SWISDFDETLTQAKTFLANhqSLDFQTKFNGIFAmTPDNLPLVGPIPSVRGLFMAASV---WVTQAAGAARFLT 356
                 44459999*********7733478889*******559********9899******777...9999999999887 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   7.3e-05      0.15     143     178 ..      15      53 ..       5     109 .. 0.80
   2 !   13.2   0.1   1.9e-05     0.038     184     237 ..     160     212 ..     131     216 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.3e-05
                  SEEEEES-SHHHHHHHHHHHHH...T-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx RF
  Pyr_redox_2 143 krivvvGgGyiGvElAaalakl...gkevtlveardrll 178
                   ri++vG+G +G+ lA +l++    +k ++l+++ + +l
   KKY20815.1  15 GRIAIVGAGIVGSALAYYLSSSpeiNKPIVLIDRSSSPL 53 
                  589999999999999999855421155677787777766 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.9e-05
                  HHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 184 elsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGv 237
                   ++++++++ +k+Gve+  ++ +k+i+  + ++  ++++   ida  vv+a+G+
   KKY20815.1 160 TITQFYQDEARKNGVEFI-QADAKAIRTVDGQIVGIDSKTGIIDAGVVVLATGI 212
                  5899**************.********999978899999999***********6 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   4.1e-07   0.00082       1      64 [.      17      82 ..      17      86 .. 0.89
   2 ?   -0.5   0.0       0.7   1.4e+03      36      54 ..     168     186 ..     166     204 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.1e-07
                EEEES-SHHHHHHHHHHHH.TT..EEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGES CS
      TrkA_N  1 iiiiGlGrvGrslaeeLse.gg..kdvvvidkdeerveelreeglevvvgdatdeevLeeagiekad 64
                i+i+G+G vG++la +Ls+  +  k++v+id++ + ++  +   ++ +vg+  + evL ++ i++++
  KKY20815.1 17 IAIVGAGIVGSALAYYLSSsPEinKPIVLIDRSSSPLNGST-GHAPGFVGQFNESEVLSRLAIDTVR 82
                79*****************5559988*************65.3478***************999876 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.7
                 HHHHTTSEEEES-TTSHHH CS
      TrkA_N  36 elreeglevvvgdatdeev 54 
                 e+r++g+e++++da    +
  KKY20815.1 168 EARKNGVEFIQADAKAIRT 186
                 7889999999999976655 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.8e-07   0.00055       1      42 [.      19      62 ..      19      68 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.8e-07
                   EE--SHHHHHHHHHHHCC...TEEEEEE-SSSSSSGGG-EECETT CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka...gfdvlllekrdrlGGraasyevpg 42
                   IvGaG+ G+++Ay+L+     ++ ++l+++++++  + ++ + pg
     KKY20815.1 19 IVGAGIVGSALAYYLSSSpeiNKPIVLIDRSSSP-LNGSTGHAPG 62
                   9***************97778999******9987.6666666665 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   5.9e-05      0.12       1      35 [.      16      53 ..      16      60 .. 0.87
   2 ?   -1.6   0.0       2.1   4.2e+03      12      42 ..     113     146 ..     113     148 .. 0.74
   3 ?    4.6   0.0     0.025        49      41      59 ..     160     178 ..     156     197 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.9e-05
                EEEEECSSHHHHHHHHHH...HHTTSEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgal...aelgkkVtvversdkll 35
                ++++vG+G +g  lA +l    e++k + +++rs+ +l
  KKY20815.1 16 RIAIVGAGIVGSALAYYLsssPEINKPIVLIDRSSSPL 53
                79****************6655699*********9999 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.1
                 HHHHHHH...HHTTSEEEEEESSSSSSTTSSHHH CS
   Pyr_redox  12 lElAgal...aelgkkVtvversdkllrllDeea 42 
                 +E+A+al   a+l +    ve ++++l+ +D +a
  KKY20815.1 113 CEMAKALglsAQLISPHEAVELAPEILKIEDVDA 146
                 7788887776667777778888888888888766 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHTTEEEEC CS
   Pyr_redox  41 easkilqeklekngievll 59 
                 ++ +  q++ +kng+e++ 
  KKY20815.1 160 TITQFYQDEARKNGVEFIQ 178
                 678899***********84 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00095       1.9       1      37 [.      18      53 ..      18      60 .. 0.86
   2 !    8.5   0.1   0.00095       1.9     110     154 ..     168     211 ..     159     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00095
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdp.sepg 37
                   aivGaG+ G a++  L ++   + +  i l+d+ s+p 
     KKY20815.1 18 AIVGAGIVGSALAYYLSSSP--EINKPIVLIDRsSSPL 53
                   8******************6..99999*****954545 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00095
  NAD_binding_9 110 rlpegvtvevhraevvdleeradgqavlladgaslaadaVvLAlG 154
                    +++ +  ve+++a++ ++++ +++   + ++   ++a  VvLA+G
     KKY20815.1 168 EAR-KNGVEFIQADAKAIRTVDGQIVGIDSKTGIIDAGVVVLATG 211
                    443.4479***********9988877777888899*********9 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   7.9e-06     0.016       1      31 [.      17      50 ..      17      71 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.9e-06
                EEEES-SHHHHHHHHHHHH.HTHC..EEEE-SCH CS
        ApbA  1 iailGaGaiGsllaakLak.agad..vtlilrsr 31
                iai+GaG +Gs la++L+     +  ++li+rs 
  KKY20815.1 17 IAIVGAGIVGSALAYYLSSsPEINkpIVLIDRSS 50
                89***************87544445699999887 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.6e-05     0.032       1      36 [.      17      52 ..      17      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.6e-05
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHH CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskek 36
                     + i+GaG vG+a+a +l+ + ++ + i+++drs + 
       KKY20815.1 17 IAIVGAGIVGSALAYYLSSSPEINKPIVLIDRSSSP 52
                     689********************99*******9875 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.9e-05     0.078      18      59 ..      15      58 ..       7      83 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.9e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-..EEEEESSSS--TTTTT CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlk..vailersvspGGGawl 59
                  ++ivGaG  G + ayyl+ +p+++  +++++rs sp  G+ +
  KKY20815.1 15 GRIAIVGAGIVGSALAYYLSSSPEINkpIVLIDRSSSPLNGSTG 58
                5699******************9996558999999998777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2777.40
//
Query:       KKY20816.1  [L=371]
Description: putative alcohol dehydrogenase-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-06   26.6   0.1    5.1e-05   23.1   0.0    2.4  3  ADH_N         Alcohol dehydrogenase GroES-like domain
    0.00012   22.1   0.2    0.00028   20.9   0.2    1.6  1  ADH_zinc_N    Zinc-binding dehydrogenase
     0.0083   17.2   0.0      0.054   14.5   0.0    2.2  2  ADH_zinc_N_2  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   8.5e-09   5.1e-05       1      61 [.      28      83 ..      28      93 .. 0.90
   2 ?    1.1   0.0     0.058   3.5e+02      89     104 ..      88     103 ..      83     108 .. 0.79
   3 ?   -3.5   0.0       1.6   9.8e+03      47      63 ..     197     213 ..     184     225 .. 0.64

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 8.5e-09
                TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE CS
       ADH_N  1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvv 61
                p+ev ikv+a++++  D + +       ++ p   G +i+G++++vg+++ +++vG+rV++
  KKY20816.1 28 PDEVQIKVAAVAMNPKDWKSAMW-----NQIPNNAGDDIAGIISAVGEGILNFTVGQRVAA 83
                689**************987766.....789999*************************87 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.058
                 TSS-SSSBSEEEECGG CS
       ADH_N  89 vsldGgfaeyvvvpek 104
                 +++ Ggfaey ++p+ 
  KKY20816.1  88 MTRGGGFAEYAIAPAL 103
                 5678********9965 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.6
                 STT-CS--TT-EEEE-S CS
       ADH_N  47 gpevkklkvGdrVvvep 63 
                 g++v ++++Gd+ +++ 
  KKY20816.1 197 GDAVVDYRKGDEAIASD 213
                 66777777787776655 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.2   4.7e-08   0.00028       1      86 [.     160     254 ..     160     273 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 4.7e-08
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHT.....TESEEEET.....TTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakkl.....Gadeviny.....kea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlv 86 
                 +vG +av+lA  +G+  +i++++     e++ +l     G d+v++y       a d+ ++++++  +e vd+vf+++    + e+  +++   G ++
  KKY20816.1 160 AVGAFAVKLAVLSGIhPIICISGRGA--EFVSSLidttkG-DAVVDYrkgdeAIAsDIRKALAAAGCPETVDYVFDAISEAGSHENIDQIISNAGVVM 254
                 69*************66666666665..999999999977.9*****87765333368888888888************8888888888888888876 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.55   3.3e+03      73     109 ..      44      80 ..       5      94 .. 0.70
   2 !   14.5   0.0   9.1e-06     0.054       4     125 ..     198     352 ..     196     356 .. 0.62

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.55
                   EEE--GGG...-..-HHHHHHHHHHHHHHH----EEEE CS
  ADH_zinc_N_2  73 vkyeflfsmkas.aqadileelaalieeGklrpvvdrv 109
                      + +    ++ a+ d ++ +   + eG l+ +v+++
    KKY20816.1  44 DWKSAMWNQIPNnAGDD-IAGIISAVGEGILNFTVGQR 80 
                   33344444444445666.99999999999999999875 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 9.1e-06
                   SEEEETTSTTHH..........HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----..........S-EEE-CHHHCTTT-EEEE--GGG. CS
  ADH_zinc_N_2   4 devidyrtedfe..........aatggegvDvvldtvggealleaslkvlpggGrlvsiggpp.........lsaallkpakkrkgrsvkyeflfsm 81 
                   d v+dyr+ d +          aa ++e vD+v+d++  +   e++ +++++ G +  + +p          +      p+++ +++s++y+  + +
    KKY20816.1 198 DAVVDYRKGDEAiasdirkalaAAGCPETVDYVFDAISEAGSHENIDQIISNAGVVMHVHEPDgykkfgikeA------PERFTRTPSFRYKDGVRV 288
                   778888866666678888888788889***********55554888888888577666667779996443332......334455566666655554 PP

                   ..-...............-HHHH........HHHHHHHHHHH----EEEEEE..GGGHHHHHHHHHSS CS
  ADH_zinc_N_2  82 kas..............aqadil........eelaalieeGklrpvvdrvfp..leeaaeAhrylesg 125
                   +++                            +  + l+eeGkl+p++ +  p  l  +++A ++l +g
    KKY20816.1 289 TTTmvndifqshqyatgD----VkdfgfvfsRYFGWLLEEGKLEPHPCELVPggLGGIKQAQEKLIKG 352
                   444444556544454441....0333445545555567888888887765444466666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2735.81
//
Query:       KKY20817.1  [L=324]
Description: putative metallophosphoesterase domain-containing [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.3e-10   39.3   0.5      5e-09   36.9   0.5    1.9  1  Metallophos    Calcineurin-like phosphoesterase
    1.1e-08   35.4   0.0    6.2e-07   29.7   0.0    2.4  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.5   5.6e-13     5e-09       2     203 ..      10     212 ..       9     213 .. 0.59

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 5.6e-13
                  EEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHH..HHHHHHHHHHHTSEE.EEEC-TTS......CHHHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrgdleke..llellaalvkypipv.ylllGNHe......gfeeellnkygylgi 90 
                  ril+i+D+H   g g  ++             +d+ +++GDl+d++ le++  +++ l+   +   p+  +++GNH+      +f++++ ++ ++l+ 
   KKY20817.1  10 RILIISDTH---GMGFTPYS----------GSCDVAIHCGDLTDGSKLEEFktTIRILETIDA---PLkLIIAGNHDftldipAFKKKVAESSTDLEP 91 
                  677777777...33333333..........3679************55553004444444444...666********877776666666666666665 PP

                  H..HHHHEHHHCEEETSEEEEEETTEEEEEEEESECEEE.THHHHHHHHHHHSCHHHHCC..........HHHHHHHHHHTTCSEEEEEESSESSCSS CS
  Metallophos  91 f..sepwrsdaevfnnlplaslgsgslkvlllhGgspel.lvsldklgslnleleapepg..........dewlkdlekrekadwvivlgHsplyrgs 175
                     ++ + +++ev + +  a        ++ll+ g+ ++ l++  kl+ +  + +++ ++          +++  +        +++v++H p+  g+
   KKY20817.1  92 ElvAREYGTYGEVEELFKKARS----AGIQLLDEGTHYFsLENGAKLKVYASPYTPSLGDwgfqynpnngHDFSIE------EGTDVVITHGPPK-GI 178
                  5666666555555544444442....34555555555555455555555555555555545544444443333333......5788999999***.66 PP

                  SCSCCHHHHH......HHHHHTTESEEEEESSSS CS
  Metallophos 176 gylfgdeale......dllkkygvdlvisGHtHv 203
                   ++ ++++ +          ++++ l ++GH+H+
   KKY20817.1 179 LDYSSNRERAgcpilfQEIARKRPLLHCFGHIHE 212
                  6666666666787765444555589999*****7 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0     7e-11   6.2e-07       2     129 ..      10     212 ..      10     222 .. 0.69

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 7e-11
  Metallophos_2   2 klaiiSDlHsnldaleavlealkevgvdaiihaGDl.eeeepevleellela......pvlaVrGNnD.....................eevveed 69 
                    +++iiSD+H+ ++ +        ++  d  ih+GDl  ++++e  ++ ++++        l++ GN+D                     e      
     KKY20817.1  10 RILIISDTHGMGFTP-----YSGSC--DVAIHCGDLtDGSKLEEFKTTIRILetidapLKLIIAGNHDftldipafkkkvaesstdlepE------ 92 
                    699******665554.....45577..*********877777777777777788889444689*****9986555555555555555550...... PP

  Metallophos_2  70 vlreaaelgtdl............................................................p.eeaelel.agekvlliHgdpl. 102
                               l                                                            p +  ++++ +g++v ++Hg p+ 
     KKY20817.1  93 -----------LvareygtygeveelfkkarsagiqlldegthyfslengaklkvyaspytpslgdwgfqynPnNGHDFSIeEGTDVVITHGPPKg 177
                    ...........444444555555555555555555557777788888888888888888888889999999944667777668999******9888 PP

  Metallophos_2 103 .......gvkdalaellkeaeegsd..vvvcGHtHv 129
                           + +++   l++e  ++++  + ++GH+H+
     KKY20817.1 178 ildyssnRERAGCPILFQE-IARKRplLHCFGHIHE 212
                    8877765444444444444.444444799******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2118.91
//
Query:       KKY20818.1  [L=1460]
Description: putative gtp binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-09   38.3   0.0    3.8e-09   37.0   0.0    1.8  1  PH         PH domain
    2.9e-06   27.7   0.0    8.3e-06   26.3   0.0    1.9  1  Anillin    Cell division protein anillin
  ------ inclusion threshold ------
        1.5    9.2   6.8        8.6    6.7   0.1    2.7  2  PVL_ORF50  PVL ORF-50-like family


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   6.4e-13   3.8e-09       4     103 ..    1220    1335 ..    1217    1337 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 6.4e-13
                  EEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEEC.......................TT.SSSSTSEEEEEEST CS
          PH    4 eGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevva.......................te.dpkrkfcfelrive 76  
                  eG+L+++g++    w++r+f +++++l  + ++      +p+  i+ls+++ v +++                       +e ++  +  f++r++ 
  KKY20818.1 1220 EGFLSQQGGDCP-YWRRRFFKMNGTKLTAFHES----TLQPRANINLSKAVKVIDDKssltkketstkgggrrksgfaeeEEgYMFVEEGFRIRFA- 1310
                  9***********.********************....9***************9999999999999988888888877773337777777888999. PP

                  SSSTEEEEEEESSHHHHHHHHHHHHHH CS
          PH   77 rngsrtyllqasseeerkeWikaiqsa 103 
                   ng +++ ++a+s e+++ W++a++++
  KKY20818.1 1311 -NG-EVIDFYADSREDKEGWMRALSET 1335
                  .99.********************986 PP

>> Anillin  Cell division protein anillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.4e-09   8.3e-06       2     141 .]    1068    1187 ..    1067    1187 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.4e-09
     Anillin    2 kgkvtisdirlpLkkkdvesfknkgeseerfavfcllki.gteivatdlvstvdrt............egtdlcFedpivlsnvppdFeidvevYsl 85  
                  k ++t+s+++ ++kk+++ ++k  +++ ++ +      i ++++   d+v  + +             e++++cF++p+++         d++++++
  KKY20818.1 1068 KKQSTFSRVFGSPKKRKEAEAKMLESR-RSKS-----PIrQQQPSLYDIVEGLVARdgsfarayvslsEYEKRCFGRPYTV---------DITCFNE 1149
                  6679******************99999.5777.....44445555555553333333569999999999************.........******* PP

     Anillin   86 rvleedlslsstprklatklsskskslsrspgkklaargskFkllGsltltlssvg 141 
                  +++ee+ + s+  +   + l+    +++r p          +k+ G+l+l+l++v+
  KKY20818.1 1150 WAMEETSNGSNRSK---KGLG----MQRRPP----------YKV-GKLELQLLYVP 1187
                  *****855444444...5566....588888..........**9.*******9985 PP

>> PVL_ORF50  PVL ORF-50-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   3.0     0.021   1.2e+02      45      87 ..     399     442 ..     392     448 .. 0.75
   2 ?    6.7   0.1    0.0014       8.6      43      93 ..    1057    1112 ..    1032    1125 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.021
   PVL_ORF50  45 arkdsrlkeekekvkskileeekkerklerqrk.keaelrrkkP 87 
                 +r+ + l++    ++s+  ++ek+e + +r+r+ ++a+ + + P
  KKY20818.1 399 GRDSMSLEDRLRLMMSQETDQEKTEAEKQRERRmRRANSKERSP 442
                 56778888888999*********998887765515666555544 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0014
   PVL_ORF50   43 ldarkdsrlkeekekvkski....leeekkerklerqrkkeaelrrkkPhlfd.vP 93  
                  ++++  +  + +k+ + s++    +++++ e k+   r+ ++ +r+++P l+d v 
  KKY20818.1 1057 MQSPIKAAASPKKQSTFSRVfgspKKRKEAEAKMLESRRSKSPIRQQQPSLYDiVE 1112
                  5555555555555555555411114455556677779999*************554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.29s 00:00:01.22 Elapsed: 00:00:00.51
# Mc/sec: 8690.85
//
Query:       KKY20819.1  [L=574]
Description: putative atp-dependent rna helicase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-31  109.2   0.0    3.3e-31  108.4   0.0    1.4  1  DEAD        DEAD/DEAH box helicase
    5.5e-20   71.8   0.0    1.4e-18   67.2   0.0    2.5  2  Helicase_C  Helicase conserved C-terminal domain
      1e-06   28.8   0.1    5.5e-06   26.5   0.0    2.2  2  ResIII      Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
       0.13   12.1   0.1       0.46   10.4   0.1    1.9  1  YueH        YueH-like protein


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.4   0.0   7.3e-35   3.3e-31       1     175 [.     128     348 ..     128     349 .. 0.82

  Alignments for each domain:
  == domain 1  score: 108.4 bits;  conditional E-value: 7.3e-35
                 -HHHHHHHHHHHTT...............CEEEEEESTTSSHHHHHHHHHHHHHHHS......TTSTS............................... CS
                 xxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxx............................... RF
        DEAD   1 tdiQaeaiplilgg...............gdvlvaaeTGsGKTlaflipvlqivyet......kgktg............................... 47 
                 t+ Q+  ip++l+                +++l+aaeTGsGKTla+++pv++++ +       +   +                               
  KKY20819.1 128 TPAQKLLIPAMLDSaqklkkrskdgepvfDQFLLAAETGSGKTLAYALPVIDAIKRAevteeaE---Evekkaerernrgknelfpddadedpphrtsg 223
                 677888888888443344555555666666788*********************7766655550...15556667778888889999999999999999 PP

                 .-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH..HTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHH CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  48 .pkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl..dngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfin 143
                  pka+i++P+ eL+ q+   +k++ +++++r  +i  +++ +   ++l  +ng+divv+tp  + ++ +++   +s+v+ lV+DEad lld +fs +  
  KKY20819.1 224 rPKAIILVPSAELVTQIGGLVKQLAHKVKYRSAAISAKQTPKYIANNLfnRNGIDIVVTTPHLISSIARKEPNLFSRVTHLVIDEADSLLDRSFSSTTL 322
                 9*******************************999999999999999966688********9999988666655************************* PP

                 HHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 144 rilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 +i+ ++       ++ +q++++SAT+pk++++
  KKY20819.1 323 EIIDKV------SPSLKQLVLCSATIPKSLNN 348
                 ******......343347*********88776 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.081   3.6e+02      15      73 ..     223     283 ..     218     294 .. 0.70
   2 !   67.2   0.0   3.2e-22   1.4e-18      14     111 .]     412     542 ..     398     542 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.081
                 TTSEEEEEESSHHHHHH....HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C  15 eggkilifvntidrlek....vklllekkgikvavlhgelpqnereeileqfnkgesdvLiat 73 
                  + k++i v++ + + +    vk l +k ++++a++ +  +q  +  + + fn++ +d++++t
  KKY20819.1 223 GRPKAIILVPSAELVTQigglVKQLAHKVKYRSAAISA--KQTPKYIANNLFNRNGIDIVVTT 283
                 578999*****998876666666665555666666666..44444555566888888888887 PP

  == domain 2  score: 67.2 bits;  conditional E-value: 3.2e-22
                 TTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTS.................................SSEEEESGGGTSS CS
  Helicase_C  14 eeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkge.................................sdvLiatdvaerG 79 
                 ++ + +++fvn ++++e+v  +l +kgi +++l+ +++ + + e l++f + +                                 ++vL++td+a+rG
  KKY20819.1 412 HSLKSMIVFVNEREKAEEVASFLASKGIDAVALTRDTSEQRQSELLSKFTAPTrqdgdskqasepytpfidtnpdqqapskkllpnVRVLVTTDIASRG 510
                 556789**********9999999999***********************976677888***************************999*********** PP

                 STSTTESEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  80 idipkvnlVinfdlprnvtsyiqriGRtgRag 111
                 id   v++Vi +d+p ++ ++i+r GR+gR+g
  KKY20819.1 511 IDTLAVRHVILYDVPHTTIDFIHRLGRVGRMG 542
                 ******************************87 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.2e-09   5.5e-06       6     169 ..     129     342 ..     124     344 .. 0.76
   2 ?   -3.3   0.0       1.7   7.8e+03      47     109 ..     399     421 ..     389     434 .. 0.49

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.2e-09
                 HHHHHHHHHHT..........TTS.......EEEEEESTTSTHHHHH.HHHHHHH-S.......................................... CS
      ResIII   6 eyQeeaienll...eklks.krdk.......rglikmaTGtGKTlva.aklierllkkgkee..................................... 55 
                 + Q+  i ++l   +klk+    k       ++l++++TG+GKTl + + +i+++++++  e                                     
  KKY20819.1 129 PAQKLLIPAMLdsaQKLKKrS--KdgepvfdQFLLAAETGSGKTLAYaLPVIDAIKRAEVTEeaeevekkaerernrgknelfpddadedpphrtsgrp 225
                 666666666663334444350..234456669**************9777888888876666899********************************** PP

                 -EEEEESSHHHHHHHHHHGGGGTGG......GEEEESSS-B--........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS....T CS
      ResIII  56 kflflvprkslleqtleefkkflseayke..igkkvsgdkkka.kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak...k 148
                 k+++lvp+ +l+ q    +k+++++ + +  +   ++  k++a +  +++ ++i+vtt + ++++       +e +l +r   ++iDEa  l +    +
  KKY20819.1 226 KAIILVPSAELVTQIGGLVKQLAHKVKYRsaAISAKQTPKYIAnNLFNRNGIDIVVTTPHLISSIA-----RKEPNLFSRVTHLVIDEADSLLDRsfsS 319
                 ***********************9988876633333333444455667899***************.....777778888889999**99888874433 PP

                 TTHHHHHT---..SEEEEEESS- CS
      ResIII 149 swreilekfke..avllglTATp 169
                 +  ei++k+++  + l+  +AT+
  KKY20819.1 320 TTLEIIDKVSPslKQLVLCSATI 342
                 55557777766543444446665 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.7
                 HH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEE CS
      ResIII  47 rllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvt 109
                 ++                                      k+v++dk+++   +s ++ i+++
  KKY20819.1 399 SIG-------------------------------------KNVHEDKETH---HSLKSMIVFV 421
                 444.....................................4444444444...3333333333 PP

>> YueH  YueH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1    0.0001      0.46      29      73 ..     391     434 ..     384     437 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0001
        YueH  29 vAiPdleWSieisyeeekeelaerLessLkkvleeeeaeeLakki 73 
                 +A  d+ WSi     e+ke   + L+s + +v e e+aee+a+ +
  KKY20819.1 391 IACADIIWSIGKNVHEDKE-THHSLKSMIVFVNEREKAEEVASFL 434
                 7888*******99977766.5799*****************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3895.20
//
Query:       KKY20820.1  [L=266]
Description: putative mannitol dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-61  207.9   2.4    1.7e-61  207.7   2.4    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    2.2e-39  135.0   1.7    2.7e-39  134.7   1.7    1.1  1  adh_short     short chain dehydrogenase
    3.3e-12   46.7   0.7    4.8e-12   46.1   0.7    1.2  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.7   2.4   2.9e-65   1.7e-61       1     234 []      26     264 ..      26     264 .. 0.96

  Alignments for each domain:
  == domain 1  score: 207.7 bits;  conditional E-value: 2.9e-65
                   TTT..TSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH- CS
  adh_short_C2   1 Gaa..sgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpflets 91 
                   Ga   +g+G ++A+ +ae Ga++v+t++++++  +k+++e+a+ +g ++  +++DV + ++v+++v++v ++fgk+D+++ nag + +  + +++ s
    KKY20820.1  26 GASgpKGMGIEAARGCAEMGADIVVTYASRAEggEKNAKEIAATYGVKAkaYKLDVGNVSSVKQFVADVIKDFGKIDVFIANAGRTAD--TGVVDGS 120
                   777889************************99999***********77445*************************************..******* PP

                   HHHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSB.STTTT.HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT CS
  adh_short_C2  92 reefdraldvnlyslfllakaalplmkeg..gsivnlssvgaerv.vpnyn.aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg 184
                    e +d++++++l++++++aka+ +++k++  gs + ++s++++++ +p+ +  y++aKa++++++r+lA+e+ +   RvN++spg+i+T +++ ++ 
    KKY20820.1 121 YEAWDEVIQTDLNGVAYCAKAVGEHFKSRgtGSFIITASMSGHIAnFPQEQtSYNVAKAGCIHMARSLANEWRD-FARVNSISPGYIDTGLSDFVP- 215
                   ************************9987779999999999999887898889********************99.********************9. PP

                   HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 185 fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                    +e ++ +++++p+gr g+++e   a+++Lasd+++y+tG++lv+DgG+t
    KKY20820.1 216 -KETQKLWHSMIPMGRDGEAKELKGAYVYLASDASTYTTGADLVIDGGYT 264
                   .8999********************************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.7   1.7   4.4e-43   2.7e-39       2     188 ..      21     212 ..      20     219 .. 0.95

  Alignments for each domain:
  == domain 1  score: 134.7 bits;  conditional E-value: 4.4e-43
                 EEEEESTT..SHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGC CS
   adh_short   2 vvlvtGas..sGIGraiakelakeGakvvv.vdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfsel 96 
                 vv+vtGas  +G+G + a+ +a++Ga++vv +++++e  e+ ake+ ++ g ka a+++Dv + ++v+++v++++k++gk+dv+++NAG t ++ + + 
  KKY20820.1  21 VVVVTGASgpKGMGIEAARGCAEMGADIVVtYASRAEGGEKNAKEIAATyGVKAKAYKLDVGNVSSVKQFVADVIKDFGKIDVFIANAGRTADTGVVDG 119
                 8*****99557*******************9******************************************************************** PP

                 SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-..TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short  97 seeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpv..agvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                 s e+w++vi++ l+gv  +++av ++++++  G+ + ++S+ g+ ++   ++++Y  +Ka+ ++++rsla+e+++   rvn++ PG++dT++  
  KKY20820.1 120 SYEAWDEVIQTDLNGVAYCAKAVGEHFKSRGTGSFIITASMSGHIANfpQEQTSYNVAKAGCIHMARSLANEWRDF-ARVNSISPGYIDTGLSD 212
                 *******************************************8776225789**********************9.9************9876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.7   8.1e-16   4.8e-12       3     154 ..      22     179 ..      20     199 .. 0.84

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 8.1e-16
                 EEEETTTS..HHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT CS
          KR   3 ylitGGlG..gLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkllee 99 
                 +++tG+ G  g+G e ar  ae ga  +v  + +a+  e+++++ia  + +g++ +++++Dv + ++v++ ++++ +++++i   i  Ag ++d+ + +
  KKY20820.1  22 VVVTGASGpkGMGIEAARGCAEMGADIVVTYASRAEGGEKNAKEIA--ATYGVKAKAYKLDVGNVSSVKQFVADVIKDFGKIDVFIANAGRTADTGVVD 118
                 68999887669**************999988877555555554444..456************************************************ PP

                 --HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--T..T-HHHHHHHH CS
          KR 100 mtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsa..gqanYaaaNa 154
                  + e++++v++  ++G+    +++ +    +    f++++S++g + ++  +q++Y  a a
  KKY20820.1 119 GSYEAWDEVIQTDLNGVAYCAKAVGEhfksRGTGSFIITASMSGHIANFpqEQTSYNVAKA 179
                 ****************88776665554544999***********99985226788988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.55
# Mc/sec: 1465.57
//
Query:       KKY20821.1  [L=1236]
Description: putative cell wall biogenesis protein mhp1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1182  (0.0659267); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.52
# Mc/sec: 7151.20
//
Query:       KKY20822.1  [L=298]
Description: putative 60s ribosomal protein l5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-80  268.8   0.2    2.7e-80  268.1   0.2    1.4  1  Ribosomal_L5e    Ribosomal large subunit proteins 60S L5, and
    1.7e-34  118.6   8.5    1.7e-34  118.6   8.5    2.1  2  Ribosomal_L18_c  Ribosomal L18 C-terminal region
  ------ inclusion threshold ------
      0.054   13.9   0.9      0.088   13.2   0.1    1.7  2  Ribosomal_L18p   Ribosomal L18 of archaea, bacteria, mitoch. 


Domain annotation for each model (and alignments):
>> Ribosomal_L5e  Ribosomal large subunit proteins 60S L5, and 50S L18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.1   0.2   4.5e-84   2.7e-80       1     163 []      14     179 ..      14     179 .. 0.97

  Alignments for each domain:
  == domain 1  score: 268.1 bits;  conditional E-value: 4.5e-84
  Ribosomal_L5e   1 krfqvkfrrrregktdYyarkrliiqdknkyntpkyRlvVrvtnkdiicqiayakiegdkvlaaayskelpkygvkvgltnyaaaYatglllarrl 96 
                    +r+q+k +rrr+gktdYyarkrli+q+knkyn+pkyRlvVr+tn+di+cqi++++++gdkv++aay++el++yg+++gltn++aaYatgll+arr+
     KKY20822.1  14 SRYQTKPKRRRQGKTDYYARKRLITQAKNKYNAPKYRLVVRFTNRDIVCQIVSSELTGDKVFVAAYAHELKRYGIEHGLTNWSAAYATGLLVARRA 109
                    6*********************************************************************************************** PP

  Ribosomal_L5e  97 lkklgldkiyegqeevtgeeynveei...deekrafkaiLdvGLartttgakvfgalkgavdgglsiphs 163
                    lkkl+ld+++eg+ee++ge++ +e++   d+e+r+fk++LdvGL+rt+tga+vfgalkga+dggl iphs
     KKY20822.1 110 LKKLELDDVFEGVEEADGEYTLTEAAetdDGERRPFKVYLDVGLHRTSTGARVFGALKGASDGGLLIPHS 179
                    ********************877766555999*************************************7 PP

>> Ribosomal_L18_c  Ribosomal L18 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   1.2      0.56   3.4e+03      64      88 ..      17      41 ..       4      49 .. 0.65
   2 !  118.6   8.5   2.9e-38   1.7e-34       1      95 []     195     292 ..     195     292 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.56
  Ribosomal_L18_c 64 ekkekkevkkeskkykkkkltleqr 88
                     ++k+k++ + ++ +y +k+l  + +
       KKY20822.1 17 QTKPKRRRQGKTDYYARKRLITQAK 41
                     4466666666667777777665555 PP

  == domain 2  score: 118.6 bits;  conditional E-value: 2.9e-38
  Ribosomal_L18_c   1 AevlrkrIfgkhvaeYmeeLkeedeekykkqFskyikkgieaddleelykkahaaIredpvkk...ekkekkevkkeskkykkkkltleqrkar 91 
                      Ae+lrk+Ifg+hvaeYme+L+++dee+yk+qF+ yi+++iead le++y++ah+aIredp+kk   ekk k+ +k+eskky+  kl++e++++r
       KKY20822.1 195 AETLRKYIFGGHVAEYMETLADDDEERYKSQFQGYIDDDIEADGLEDVYTEAHKAIREDPFKKdeeEKKGKDFWKAESKKYRVGKLSKEEKEQR 288
                      8************************************************************98886668888999******************* PP

  Ribosomal_L18_c  92 vkqK 95 
                      vk+K
       KKY20822.1 289 VKEK 292
                      **98 PP

>> Ribosomal_L18p  Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.5e-05     0.088      16      84 ..      40     112 ..      21     121 .. 0.72
   2 ?   -2.5   0.1       1.1   6.6e+03       6      20 ..     281     295 ..     274     297 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.5e-05
                     TT--TTSSS-EEEEEE-SS-EEEEEE-T..TT--EEEEECS-SCCCT..S-SSSCHHHHHHHHHHHHHHHCHH CS
  Ribosomal_L18p  16 kklsgtaerprlvvfrsnrhiyaQvidd..vkgktlasastlekelk..lkstknkeaakkvgeliAerakek 84 
                      k + +a + rlvv  +nr i+ Q++ +  + +k+ ++a + e +     +   n +aa + g l+A+ra++k
      KKY20822.1  40 AKNKYNAPKYRLVVRFTNRDIVCQIVSSelTGDKVFVAAYAHELKRYgiEHGLTNWSAAYATGLLVARRALKK 112
                     3333456689***************9873256777777777666555545667899999**********9986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.1
                     HHCHHHHHHTTT--T CS
  Ribosomal_L18p   6 arkrRhkRirkklsg 20 
                     +++ +++R+++k+++
      KKY20822.1 281 SKEEKEQRVKEKIQN 295
                     456677888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       910  (0.0507558); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 1840.48
//
Query:       KKY20823.1  [L=290]
Description: putative mas3 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-69  234.5   6.7    1.7e-69  233.9   6.7    1.3  1  Egh16-like  Egh16-like virulence factor


Domain annotation for each model (and alignments):
>> Egh16-like  Egh16-like virulence factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.9   6.7   9.5e-74   1.7e-69       1     183 []      17     255 ..      17     255 .. 0.99

  Alignments for each domain:
  == domain 1  score: 233.9 bits;  conditional E-value: 9.5e-74
  Egh16-like   1 saHgvitkvtGangvngpglgvadgtprdgtsrasgsqaDttvfrdkeikkkkasglGrtlgsgkvniaaeiaklm....................... 76 
                 saHgv+t+++Gangvn+pgl+v+dgtprd++s+++gs+aDt+++rd+e+++ +as+lGrt+g+g+v++aa+i+++m                       
  KKY20823.1  17 SAHGVVTQIQGANGVNMPGLSVQDGTPRDCASPSCGSEADTSIIRDNELGTDEASALGRTKGGGPVDAAAAISNFMggsstntsttkkrgllgdllggd 115
                 79***********************************************999*********************************************** PP

  Egh16-like  77 ...............................agaesglptvsaggtltmtvhqvnqDGaGpltckiDststgtdakalqkaevtknvpGk..gglsaak 142
                                                +g+ sglpt+ ++gt+tmt+hqvnqDGaGpl+++iDsts+gtd++a+++a+vt++vpG   ggls a+
  KKY20823.1 116 sdssssdsastsdgtktadgssesqvaatagQGQVSGLPTADDNGTVTMTFHQVNQDGAGPLSAQIDSTSGGTDTSAFEDAQVTQDVPGIgiGGLSGAT 214
                 *****************************99999******************************************************9999******* PP

  Egh16-like 143 ntdfplkvqlpagltCtGtvggaknvCivRceNaakaGPFG 183
                 +tdfp+kvq+ +g+ C+Gt gga+nvCivR++N+a+aGPFG
  KKY20823.1 215 TTDFPVKVQMAQGTVCSGTSGGASNVCIVRVQNSAAAGPFG 255
                 ****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1964.98
//
Query:       KKY20824.1  [L=369]
Description: hypothetical protein UCRPC4_g04097 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   18.6   2.7     0.0015   18.4   0.7    2.0  2  Wtap       WTAP/Mum2p family
     0.0035   17.3   6.9     0.0051   16.8   6.9    1.1  1  SIKE       SIKE family
  ------ inclusion threshold ------
       0.97    9.4  10.7        1.6    8.7  10.7    1.3  1  Cep57_CLD  Centrosome localisation domain of Cep57


Domain annotation for each model (and alignments):
>> Wtap  WTAP/Mum2p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.33     2e+03     127     147 ..     169     189 ..     162     197 .. 0.56
   2 !   18.4   0.7   2.6e-07    0.0015     107     156 .]     209     258 ..     201     258 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.33
        Wtap 127 fveelkkaleeleelleelee 147
                 +++elkk+ e  + ++ ++ee
  KKY20824.1 169 LSNELKKNRELTNSIVRDAEE 189
                 345555555555555555544 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 2.6e-07
        Wtap 107 kvleegrvakLeselalqkkfveelkkaleeleelleeleeevevlqstl 156
                 +++  gr+ +Le ela+++k+ve +k+++ e  +l+ e e+ v  +++++
  KKY20824.1 209 EMAAAGRIRELERELAKERKLVELYKREQVENTKLVGEYETAVGTMTQQI 258
                 68999***************************************999987 PP

>> SIKE  SIKE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   6.9   8.6e-07    0.0051      11     176 ..     166     339 ..     157     342 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 8.6e-07
        SIKE  11 akkLverLkehdtaAdsLleqaqalnkkiesmkqyqeevkeln.eiakekprseLiagiqqenrqireLqqENreLrasleehqsaLelImsKYReqvs 108
                 + +L+++Lk++ + ++s++++a+ + ++ +s + +q   +e+  e+a  +  +eL  ++++e + ++  ++E+ e    + e+++a+  + ++ Re ++
  KKY20824.1 166 VVELSNELKKNRELTNSIVRDAEEVMRRYNSSE-VQPTTNEIGqEMAAAGRIRELERELAKERKLVELYKREQVENTKLVGEYETAVGTMTQQIREYCT 263
                 5689************************99987.44444444314444344457888899999999999****************************99 PP

        SIKE 109 kllkakkeekkeavlkk...klseeve......sqeekieeMaaVmrkavevdeeesakeqeklaqLetENkeLRel 176
                 ++  +   ++++ ++++   +++++++      + ++k  +   ++r+a ++ +ee+a++  +++ L+ E + LR+ 
  KKY20824.1 264 NNKLNY-LAQTRHYNNLlqkEKDDHLQsrlardEWHAKCMKVCGMIRHAKKLADEEFADHIDIISGLQGEVRVLRKC 339
                 875544.3333333333333333334444545566677777778899****************************86 PP

>> Cep57_CLD  Centrosome localisation domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  10.7   0.00027       1.6      32     158 ..     171     300 ..     165     304 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00027
   Cep57_CLD  32 keaskykkvl.....qeeseekekekseeskqnqelesqLaaaesrcslLEkqLeymrkmvesaekerkavlekqaslekek..kqesselqaklekLe 123
                 +e +k+++++     ++e+  ++ ++se + +++e+ +++ aa  r++ LE+ L + rk+ve  ++e+ + ++   + e++    +++ ++    +kL+
  KKY20824.1 171 NELKKNRELTnsivrDAEEVMRRYNSSEVQPTTNEIGQEM-AAAGRIRELERELAKERKLVELYKREQVENTKLVGEYETAVgtMTQQIREYCTNNKLN 268
                 4444444444333233444444445555556666666666.5668******************999998888854444444444667777778888888 PP

   Cep57_CLD 124 kLEke..ylrLtatqklaekkikeLeekLkeEehqrk 158
                  L +   y +L        +k  +L+++L ++e + k
  KKY20824.1 269 YLAQTrhYNNLL-----QKEKDDHLQSRLARDEWHAK 300
                 887641144443.....34455666777766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       893  (0.0498076); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.49
# Mc/sec: 2252.50
//
Query:       KKY20825.1  [L=421]
Description: putative mfs glucose [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-91  307.4  11.8    2.2e-91  307.0  11.8    1.0  1  Sugar_tr  Sugar (and other) transporter
    1.7e-39  135.7  64.4    4.7e-33  114.6  32.2    2.1  2  MFS_1     Major Facilitator Superfamily
    6.7e-06   25.6   4.8    6.7e-06   25.6   4.8    2.8  2  MFS_4     Uncharacterised MFS-type transporter YbfB
    0.00039   19.0   2.8    0.00039   19.0   2.8    2.0  2  TRI12     Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
      0.015   13.7   6.5      0.017   13.4   3.6    2.6  2  OATP      Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.0  11.8     6e-95   2.2e-91      47     443 ..       5     405 ..       2     411 .. 0.96

  Alignments for each domain:
  == domain 1  score: 307.0 bits;  conditional E-value: 6e-95
                 HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHH CS
    Sugar_tr  47 lsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyql 145
                  +gl+ si+ +G+++G+l+ag+ ++++GR  ++ +++++f+ g +  a+a+   +v v+ivgR+l+Gig+G+ +v++P+yisE+Ap ++Rg+++ ++q+
  KKY20825.1   5 ELGLVQSIYTLGGLVGALLAGPSATKYGRLFTMRATTIVFIFGPLAEALAP---HVGVMIVGRFLSGIGAGASTVVCPIYISEVAPVSKRGFFGAFTQV 100
                 5799***********************************************...********************************************* PP

                 HHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHC.HHHHHHHHHHHHHHHHHHH....... CS
    Sugar_tr 146 aitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekgkeeeakevlaklrge.edadrelaeekdsleaeqeee..... 238
                 ++ +Gil+a+ +g++l++ s    wri lg + ++  + +++ll  PE+P +l e+++  +a+++l+ +rg+    d+e++e+ +  e+ +ee+     
  KKY20825.1 101 MTNVGILMAQLLGYFLSRDSL---WRIILGAAGILGAIEFLGLLITPETPKWLSEHRQANRARRILQLIRGShINIDEEVKEWNHPPEHDEEESllgpr 196
                 ****************99888...************************************************77889999******99998888***** PP

                 ............HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHH CS
    Sugar_tr 239 .........kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnfvatfvaiflvdrfGRRtllllGaagma 328
                          ++ + ++++s + r +++ +v+++++qqltGin+i+ ys +i+e++  +  +l t+iv++vn+++t++  +l d++GR+ +lll+++gm 
  KKY20825.1 197 aseatprkpHVGIIQVVKSPETRTAVIGVVAVMVAQQLTGINSIIMYSVNILETVLPTSAALLTVIVSAVNVFVTLACSPLADKIGRKWCLLLSISGMG 295
                 ***999988788888888888999999999********************************************************************* PP

                 HHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH.T-HHHHHHHHHH CS
    Sugar_tr 329 icfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaig.ggyvflvfagla 426
                 +  v+l+   ++l+++   + i+a + ++lf+a fa+g+gpvp++l+sEl  ++  +++++ a a+nw+a+f+++++fpi+ +a+g  g v++vfa+la
  KKY20825.1 296 CGSVLLA---IALNSN---IRILAGISTLLFVASFAVGLGPVPFILASELVGPEAVGATQSWALAANWIATFIVAQFFPILKDAMGgRGRVYWVFAALA 388
                 ******6...888888...5******************************************************************6788********* PP

                 HHHHHHHHHHS--STT- CS
    Sugar_tr 427 vlfiifvfffvpetkgr 443
                 ++   f+ + vpetkg+
  KKY20825.1 389 LILGSFIAWWVPETKGK 405
                 ***************98 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6  32.2   1.3e-36   4.7e-33      29     352 ..       1     363 [.       1     364 [. 0.82
   2 !   35.0  24.2     2e-12   7.2e-09      22     180 ..     246     407 ..     220     418 .. 0.78

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 1.3e-36
       MFS_1  29 ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigll 126
                 +sp+e+gl+ ++y+lg +v++l++G+ ++++Gr  ++ ++ ++f++g l+ + +a+++ +++v+r+l+G+gaga++ ++ ++i++++p ++rg+  ++ 
  KKY20825.1   1 MSPTELGLVQSIYTLGGLVGALLAGPSATKYGRLFTMRATTIVFIFGpLAEA-LAPHVGVMIVGRFLSGIGAGASTVVCPIYISEVAPVSKRGFFGAFT 98 
                 59*********************************************33333.557777**************************************** PP

       MFS_1 127 sagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee..................................... 188
                 ++++++G++++ llg +l+    Wr +  +++i++++ f+    ll +++++++ +++++                                       
  KKY20825.1  99 QVMTNVGILMAQLLGYFLSRDSLWRIILGAAGILGAIEFL---GLLITPETPKWLSEHRQANrarrilqlirgshinideevkewnhppehdeeesllg 194
                 *******************5556***************99...88888888888888888888999999999999999999999999999999999966 PP

       MFS_1 189 ....kgtgpaplvp.....awkallkdpvlwillialllfffgfsg......lltllplylqevlglsglllaglllallalvgailallagrlsdrlg 272
                     +      ++p     ++ +++k+p    ++i+++ ++++ ++      +++ + + l +vl  s    a+ll  ++++v++++ l ++ l+d++g
  KKY20825.1 195 prasE------ATPrkphvGIIQVVKSPETRTAVIGVVAVMVAQQLtginsiIMYSVNI-LETVLPTS----AALLTVIVSAVNVFVTLACSPLADKIG 282
                 55553......333444553444444443322444444443333333333324444444.56666666....555588999999999************ PP

       MFS_1 273 rrrrlllallllllaalglallavtssavllll..vlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 r++ lll+++++ +++++la++ +++  +l+ +  +l++++f++g+  p  + las+l++pe+ g+ ++++  a+ +++++ 
  KKY20825.1 283 RKWCLLLSISGMGCGSVLLAIALNSNIRILAGIstLLFVASFAVGL-GPVPFILASELVGPEAVGATQSWALAANWIATFIV 363
                 *************************777777776555556667775.89**************************9999985 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 2e-12
       MFS_1  22 alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa........sslw.lllvlrvlqGlgagalfpagaalia 111
                  + e+  + p+++ ll+++++++ ++ +l  ++l+d++Gr+++lll++ +++ g++ll++a        +++  ll+v+ +  Glg     p+  +l++
  KKY20825.1 246 NILET--VLPTSAALLTVIVSAVNVFVTLACSPLADKIGRKWCLLLSISGMGCGSVLLAIAlnsnirilAGIStLLFVASFAVGLG-----PVPFILAS 337
                 23333..678999*****************************************77777545544445555666777777777777.....9******* PP

       MFS_1 112 dwfpkeergraigllsagfslGailgpllggllasslgWra.vfyilaivsllafvlfllllpeepperk 180
                 +++ +e  g   +++ a++ +++ + + + ++l ++ g r+ v++++a+++l+++ ++++++pe++ +  
  KKY20825.1 338 ELVGPEAVGATQSWALAANWIATFIVAQFFPILKDAMGGRGrVYWVFAALALILGSFIAWWVPETKGKAN 407
                 **********************************7777666379999999999999989**999887655 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   4.8   1.9e-09   6.7e-06      26     166 ..       2     141 ..       1     167 [. 0.79
   2 ?   -1.7   5.8      0.39   1.4e+03     132     177 ..     362     406 ..     272     420 .. 0.64

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.9e-09
       MFS_4  26 slsqagllaaaNylGYLvGallaafalsagaeRlr.llagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaarrervgallf 123
                 s++++gl+ ++  lG LvGalla    + +  Rl  ++a +++     la al+ ++ ++++ Rfl+G+++++  v+    + + a  ++r++ ga+  
  KKY20825.1   2 SPTELGLVQSIYTLGGLVGALLAG-PSATKYGRLFtMRATTIVFIFGPLAEALAPHVGVMIVGRFLSGIGAGASTVVCPIYISEVAPVSKRGFFGAFTQ 99 
                 8899*******************4.44555666666999999999999************************************************999 PP

       MFS_4 124 aGvGlGiavsgllvllllqlglsasslWlalavlsavllllva 166
                     +Gi+++ ll ++l +  l    +  a+++l a+ +l ++
  KKY20825.1 100 VMTNVGILMAQLLGYFLSRDSLWRI-ILGAAGILGAIEFLGLL 141
                 9999999999988877766554333.44555666666555443 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.39
       MFS_4 132 vsgllvllllqlglsasslWlalavlsavllllvalllpraalrea 177
                 + +   ++l  +  +   +++++a+l+++l   +a+++p+++ + a
  KKY20825.1 362 IVAQFFPILKDAMGGRGRVYWVFAALALILGSFIAWWVPETKGK-A 406
                 44444444444444455556677778888888888888733333.3 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   2.8   1.1e-07   0.00039      81     233 ..       7     160 ..       3     173 .. 0.88
   2 ?   -1.4   4.2      0.16   5.9e+02      82     202 ..     258     387 ..     215     421 .] 0.64

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.1e-07
       TRI12  81 slfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpag.asplfvgelm.snktkflgllivsipvvv 177
                 +l+ +++t+g  v  l+ g  + ++gr   + +t i+ + g +  + a ++  ++    l g+ ag +    p+++ e+    k  f+g ++  +  v 
  KKY20825.1   7 GLVQSIYTLGGLVGALLAGPSATKYGRLFTMRATTIVFIFGPLAEALAPHVGVMIVGRFLSGIGAGASTvVCPIYISEVApVSKRGFFGAFTQVMTNVG 105
                 78899***********************99***********************************9876268******9734788999*9998888887 PP

       TRI12 178 tsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaqlhgkkvrkr 233
                 +  ++  lg  l+ +  wr i+    i+ ai  l +++    p +   h +  r r
  KKY20825.1 106 IL-MAQLLGYFLSRDSLWRIILGAAGILGAIEFLGLLITPETPKWLSEHRQANRAR 160
                 77.78999999********************9999999888888877777666655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.16
       TRI12  82 lfstlwttgqavsilvmgrltdrfgrrpfvilthilgl.vgaivgctatkfn.tllaa.mtllgvaagpagaspl...fvgelms....nktkflglli 170
                 l++ + +  +    l    l+d++gr+  ++l  i g+  g+++ + a + n  +la   tll va+   g  p+   +  el+       t+   l  
  KKY20825.1 258 LLTVIVSAVNVFVTLACSPLADKIGRKWCLLL-SISGMgCGSVLLAIALNSNiRILAGiSTLLFVASFAVGLGPVpfiLASELVGpeavGATQSWALAA 355
                 444444444445556778899****9866554.455552466655555544414555515899999888877764322335665411115677778888 PP

       TRI12 171 vsipvvvtsglspylgqrlaiqgswrwifyiy 202
                   i + +++   p l + +  +g   w+f   
  KKY20825.1 356 NWIATFIVAQFFPILKDAMGGRGRVYWVFAAL 387
                 88888888888888888888888888887543 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       0.2   7.2e+02     166     195 ..       2      31 ..       1      43 [. 0.84
   2 ?   13.4   3.6   4.9e-06     0.017     132     193 ..      57     118 ..      37     274 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.2
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 166 splylgilyalrilGpalGfllGslllkly 195
                 sp+ lg+++++ +lG  +G ll++  +  y
  KKY20825.1   2 SPTELGLVQSIYTLGGLVGALLAGPSATKY 31 
                 78889****************999877766 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4.9e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 132 vllfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllk 193
                 v +++++ +l+GiGa +   ++  Yi + +  ++  ++ +++++++ +G  ++ llG++l +
  KKY20825.1  57 VGVMIVGRFLSGIGAGASTVVCPIYISEVAPVSKRGFFGAFTQVMTNVGILMAQLLGYFLSR 118
                 569*******************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3117.98
//
Query:       KKY20826.1  [L=1089]
Description: putative phosphatidylserine decarboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-54  184.5   0.0    2.6e-54  183.8   0.0    1.3  1  PS_Dcarbxylase  Phosphatidylserine decarboxylase
    8.4e-37  125.6   0.0    2.8e-18   66.1   0.0    2.5  2  C2              C2 domain
  ------ inclusion threshold ------
      0.029   13.6   0.0      0.057   12.7   0.0    1.4  1  Phage_GPD       Phage late control gene D protein (GPD)
       0.18   11.9   0.9         15    5.6   0.1    2.7  3  DUF4840         Domain of unknown function (DUF4840)


Domain annotation for each model (and alignments):
>> PS_Dcarbxylase  Phosphatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.8   0.0   5.7e-58   2.6e-54       1     199 [.     842    1052 ..     842    1053 .. 0.94

  Alignments for each domain:
  == domain 1  score: 183.8 bits;  conditional E-value: 5.7e-58
  PS_Dcarbxylase    1 lneffvrklkdgaRpi..dddpgaivsPaDgrilqigeieegsviqvKgityslrdLlgeasessadsfkngyfvviyLspgdyHryhaPvsg 91  
                      +neff+r lk+gaRp   +dd++ +vsPaD+r + + ++++ + i+vKg +y+++ Llg+a +++a ++++g + +++L+p+dyHr+h+Pv+g
      KKY20826.1  842 FNEFFYRALKPGARPCsaPDDSNIVVSPADCRSVVFNQMDDATRIWVKGRDYTVERLLGNAYPQDAARYRGGALGIFRLAPQDYHRFHVPVDG 934 
                      8***************86666667********************************************************************* PP

  PS_Dcarbxylase   92 kveerrhipGellsvnpsalkelrglftlneRvvlview..kGkvavvpvGatnvgsivlnvlkgdelkkGeelGyFqf.GStvvlvfeag.. 179 
                      ++   + i+Ge+++vnp+a+++  +++ +n Rv++ i++  +G+v+++ +Ga++vgs v++ ++g+ lk+ eelGyF+f GStv  +fe+g  
      KKY20826.1  935 VMGTPKLIEGEYYTVNPMAIRSALDVYGENVRVIVPIDSvsHGRVMFICIGAMMVGSTVITRKPGENLKRAEELGYFKFgGSTVLSLFEPGrv 1027
                      **************************************5569*************************************************99 PP

  PS_Dcarbxylase  180 kfieslvekgq.....kvkmGeklg 199 
                      +f+++l+e++       +++G ++g
      KKY20826.1 1028 QFDDDLIENSSgaletLIRVGMSIG 1052
                      8888888888777776677776665 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   4.6e-19   2.1e-15       2     102 ..      44     143 ..      43     144 .. 0.88
   2 !   66.1   0.0   6.1e-22   2.8e-18       5      95 ..     263     357 ..     259     367 .. 0.86

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 4.6e-19
                 EEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHH...HHTTHHH CS
          C2   2 klevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplst...llsgeea 97 
                 +l+ +vi+A+nL++kd +g+sdpy +v+l g+ ++ T  i+++lnP+W+  + ++++      +e  ++d+dr +++d +G++ i +++     + +++
  KKY20826.1  44 ILKAYVIQARNLAPKDRGGTSDPYLVVTL-GAARQSTPSISKTLNPEWKVCLDLPING--VPLVECVLWDKDR-FGKDYMGEFDIAVEDifaNGRPTQE 138
                 58899************************.******************8888888887..*************.88888**********6544455556 PP

                 HEEEE CS
          C2  98 egwyp 102
                  +wy+
  KKY20826.1 139 PKWYT 143
                 67776 PP

  == domain 2  score: 66.1 bits;  conditional E-value: 6.1e-22
                 EEEEEEESSSSSST....TSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESC.HTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHTTH CS
          C2   5 vtvieAknLpnkdk....kgssdpyvkvsldgkqkakTrviknslnPvWnekftfevae.leeakLeveVfdndrlskddfiGkveiplstllsge 95 
                  +v++ ++Lp+       +  +dp+v+ sl g ++ +T+vi+ +lnP++nek++f++ + +++ ++ ++V+d+d++s++d+i ++++p++ l + +
  KKY20826.1 263 AEVVKVTDLPPERNmtrtSFDMDPFVVTSL-GRKVLRTKVIRHNLNPIYNEKMVFQLMKhESSYVISFTVMDRDKMSGNDMIATTNFPVQALIQAA 357
                 679999999666333444445*********.************************88877******************************965554 PP

>> Phage_GPD  Phage late control gene D protein (GPD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.3e-05     0.057     216     295 ..     203     291 ..     166     295 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.3e-05
   Phage_GPD 216 aeaaqpr.aaasalevydypg..dyaskaegerlarlrlealrararrfsgesnvrglapGrtftlsghp......rkaaanreylits 295
                 +e ++++ +++++ e+ d +     + +++ +rlarlr  +   ra +f+g s+v+g+    ++++++ p      r++   + +++ts
  KKY20826.1 203 NEDVDAEmEDDTSDETDDPTKpdSIEKRKRKRRLARLRRRSIAIRAYEFTGNSDVAGIIFAEVVKVTDLPpernmtRTSFDMDPFVVTS 291
                 23333332333333333333355555669***************************************997776665555555666665 PP

>> DUF4840  Domain of unknown function (DUF4840)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0034        15       6      55 ..     310     357 ..     309     365 .. 0.74
   2 ?   -3.5   0.0       2.1   9.6e+03       4      30 ..     446     473 ..     445     478 .. 0.82
   3 ?    3.8   0.0     0.012        56      79     123 ..     933     979 ..     921     990 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0034
     DUF4840   6 YtgkmiflspaknegneedktDvldisv.aevkdstltienfPvkdLaksi 55 
                 Y+ km+f    k e++   +  v   +  ++  +++++ +nfPv++L+++ 
  KKY20826.1 310 YNEKMVFQL-MKHESSYVISFTVM--DRdKMSGNDMIATTNFPVQALIQAA 357
                 777888855.56666666666666..344778889************9976 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.1
     DUF4840   4 GsYtgkmiflspaknegneedktDvl.d 30 
                 Gs+ + +++  p+++e+n++ +  v+ d
  KKY20826.1 446 GSFDNNLLTPVPTNPETNNNGGLNVIeD 473
                 9999999998899999999999888844 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.012
     DUF4840  79 efvlndekdsiy..flinpeplelnlnyggeshkVevtfaadssGay 123
                 + v+ ++k ++   +++np+++   l++ ge+ +V v +++ s G  
  KKY20826.1 933 DGVMGTPKLIEGeyYTVNPMAIRSALDVYGENVRVIVPIDSVSHGRV 979
                 55666666654344*************************99999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1089 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.51
# Mc/sec: 6444.00
//
Query:       KKY20827.1  [L=874]
Description: putative cellobiose dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-58  195.3   3.3      7e-58  195.3   3.3    2.9  2  CDH-cyt         Cytochrome domain of cellobiose dehydrogenase
    7.6e-26   91.2   0.0    1.5e-25   90.2   0.0    1.5  1  GMC_oxred_N     GMC oxidoreductase
    7.9e-22   78.3   0.5    1.7e-21   77.2   0.5    1.6  1  GMC_oxred_C     GMC oxidoreductase
    3.3e-09   36.3   1.4    8.3e-05   21.8   0.8    2.3  2  FAD_binding_2   FAD binding domain
    3.4e-07   30.0   0.7      2e-06   27.5   0.6    2.1  2  FAD_oxidored    FAD dependent oxidoreductase
    5.9e-07   29.4   2.0    0.00013   21.6   0.4    2.5  2  DAO             FAD dependent oxidoreductase
    1.4e-06   27.3   0.8    5.8e-06   25.3   0.4    2.0  2  HI0933_like     HI0933-like protein
    2.6e-06   26.9   0.7    4.5e-06   26.1   0.7    1.3  1  FAD_binding_3   FAD binding domain
    3.5e-06   26.5   0.2    1.6e-05   24.3   0.0    2.0  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    5.4e-05   23.3   0.1    0.00016   21.8   0.1    1.9  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
      6e-05   22.3   0.6    0.00012   21.4   0.1    1.7  2  GIDA            Glucose inhibited division protein A
    0.00065   19.0   0.2     0.0014   17.9   0.2    1.5  1  Thi4            Thi4 family
     0.0012   18.2   0.0     0.0039   16.5   0.1    1.8  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
     0.0023   17.1   0.1     0.0023   17.1   0.1    2.1  2  Lycopene_cycl   Lycopene cyclase protein
     0.0034   16.3   0.4      0.012   14.5   0.4    1.8  2  Trp_halogenase  Tryptophan halogenase
  ------ inclusion threshold ------
       0.02   15.4   0.9      0.042   14.4   0.3    1.8  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
       0.04   13.9   0.4       0.19   11.7   0.1    2.2  2  NAD_binding_9   FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> CDH-cyt  Cytochrome domain of cellobiose dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.3   3.3   6.7e-61     7e-58       1     181 [.      28     206 ..      28     207 .. 0.94
   2 ?   -2.5   5.6       3.2   3.4e+03      69     131 ..     787     850 ..     740     859 .. 0.62

  Alignments for each domain:
  == domain 1  score: 195.3 bits;  conditional E-value: 6.7e-61
                 EE-TTT--EEEEE...TT-SS-EEEEEEB-CCCTS--SEEEEEEEEE-GCS--EEEEESSSSSCTSEEEEEEEETTEEEEEEEEBSSSSS-EE--SS-E CS
     CDH-cyt   1 ytdpatgitFqty...tdeaggftfgialPedattdatefigqlvaplsakagWaGislggsMtnnlLlvaWpngnevvtSfrlatgyasPevytgdak 96 
                 ytd++tgi+Fq++   t+ +gg++fgialPed+   +t+figqlv+pl++++gW+G+s+gg+M n lL+vaW++g+++vtSfr at+y++P+vy+g+ +
  KKY20827.1  28 YTDANTGIDFQRFyenTQISGGYSFGIALPEDP---TTDFIGQLVVPLNSSTGWGGVSFGGAMLNTLLFVAWTDGDDIVTSFREATAYSTPAVYSGNVT 123
                 9***********76777779***********98...9***********858************************************************ PP

                 EEEEE..EEE-SSEEEEEEEEET-SEEEETTEEEE--TTTEEEEEEEEESS--BSTTSCCCB-----SEEEEEEEE--CCB-TTHH CS
     CDH-cyt  97 ltqls.gtsvnathftltfrCqgClsweqggtsgsastssnlvlgwAqskkaptnpaspdstlsqHdngfgqfgadlsaaksasYe 181
                  +++  gt++n+th+++tf C+gC+    ++t  sas  s+ ++g+A++ ++pt+p++++s+ls+Hd+g+g+++++ls+a+sasY+
  KKY20827.1 124 ASPITnGTFINSTHLSYTFVCSGCIVGP-TTTF-SAS-YSSYIFGYAVAGTNPTDPTDATSALSYHDQGYGEYTVELSNATSASYA 206
                 ***************************4.4444.444.37888******************************************8 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.2
                 EEETTEEEEEEEEBSSSSS-EE--SS-EEEEEE.EEE-SSEEEEEEEEET-SEEE.ETTEEEE- CS
     CDH-cyt  69 WpngnevvtSfrlatgyasPevytgdakltqlsgtsvnathftltfrCqgClswe.qggtsgsa 131
                 + n+++ ++S   a  +a    ++ +a+ t +  t+++at   +t+  +   s + ++++s+ +
  KKY20827.1 787 YSNSTTSIISKVAAPTSAVSGTVSASASTTLFTVTKASATATAATAVSTSTASSSsSSSSSSGS 850
                 4556667777777777777777777777777778888888888887777776663233333333 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.0   1.4e-28   1.5e-25       1     295 [.     250     547 ..     250     548 .. 0.81

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 1.4e-28
  GMC_oxred_N   1 vdelveggGsagsvvAaRLsedpstsvlvleaggreknrlimvlalalklidkklnt.ayetepekalngrrlil....paGktlGGgsvvNwsayiR 93 
                  +d +v+ggG  g   A+RL+e ++ +vl++e g+  + ++  +++l ++++  k++  a+ ++ +k ++ + +       aG  lGG+s+vN+  +i 
   KKY20827.1 250 YDVIVVGGGPSGIIAAERLAESGA-TVLLIERGSASTVQTGATDTLSWNDSLTKYDLpAAGSRLTKVSDVSEFCTdtasTAGCLLGGSSSVNALNFIH 346
                  689*****************9975.79**********99966666666666666654133344444444433332111136999************** PP

  GMC_oxred_N  94 tpaadlde.WeeeaglegwssdevlpafkkvetaqalesdlhgvdgrlgvtekgkeesplnkallkaaeelGlpvprdlngk..hqcGvcllgvtcrt 188
                  +++ d+d+ W +      w++++v +a +++          +    +l+ ++   + ++ ++++ +   + G+  ++ +++   + ++++   +   +
   KKY20827.1 347 PQERDFDDgWPTG-----WKWNDVSDAADRLY--------ERNPGTTLPSADGKHYDQAGFNVMSSFLTSNGWTQVDSIKEPnaKTKAFSQPAWSILN 431
                  ******9768887.....*************9........44456889999999999999**************777776666788999999999*** PP

  GMC_oxred_N 189 garqstarawLrpalerpnleiltgakaekiilegrkkravGVeasdkkgt.vkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkev.....gvd 280
                   +r +  r++L+    ++n ++  +aka+++i    ++ ++GV + ++++t    ++    +vv+aaGal++P +L +SG+G+ + ++ v     gv+
   KKY20827.1 432 SKRAGPVRTYLPLVFDADNFTLKLNAKATQVIRT--GGTITGVLVANDDRTsEIINIKTGGKVVLAAGALSTPRILWNSGIGMSDAIQTVqsgtsGVS 527
                  *******************************655..**************943445566789***********************9997644333666 PP

  GMC_oxred_N 281 v.....vvdlpvGknLqdHp 295
                  +      + lpvG nL+dHp
   KKY20827.1 528 LpnetdWISLPVGYNLKDHP 547
                  52222235699********8 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.5   1.6e-24   1.7e-21      17     144 .]     646     762 ..     632     762 .. 0.84

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 1.6e-24
                  EEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGGTTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B-STCGC.....BSB-TTS CS
  GMC_oxred_C  17 aplidpnylsdprdlaalvealkaarkilaaaaldvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMGadpkd.....sVVDsdl 109
                  + +++  +l++++d+aa+  +l+++ ++ ++a+        t  +++ + +a+   d+          +t+ H++G+++MG+d+ +     sVVD ++
   KKY20827.1 646 TEVVNSPWLNTDADRAAMTNFLQWLLDTSNSAN-------STMTYTGGNVNATPLLDT---------RITGDHWVGSAKMGEDDGReangtSVVDLNT 727
                  4578999*************************3.......444444555555666666.........56889**********9999999********* PP

                  BBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C 110 rvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                  +v+g+dnL+VvDaS+ P+ p++n+++ i+ +Ae a
   KKY20827.1 728 KVYGTDNLFVVDASIHPDLPTGNTQAIIMIVAEAA 762
                  ********************************975 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.8   7.9e-08   8.3e-05       1      38 [.     251     288 ..     251     297 .. 0.91
   2 !   12.6   0.0     5e-05     0.053     156     204 ..     451     501 ..     420     518 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 7.9e-08
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGG CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggat 38 
                    DviV+G+G +G  AA ++ae G++v+++e +++   +t
     KKY20827.1 251 DVIVVGGGPSGIIAAERLAESGATVLLIERGSASTVQT 288
                    9*****************************99966655 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 5e-05
                    EEEEESEEEEEEEECTTEEEEEEEEET.TTTCEEEEEES.EEEE-----GG CS
  FAD_binding_2 156 vdfqerteadeLivedgrvtGavvenp.esgrevrirak.avvlatgGfgr 204
                     ++  +++a+++i+++g +tG+ v+n+ +++++  i+   +vvla+g+ + 
     KKY20827.1 451 FTLKLNAKATQVIRTGGTITGVLVANDdRTSEIINIKTGgKVVLAAGALST 501
                    7888999******************999*******************9875 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.6   1.9e-09     2e-06       1      31 [.     251     281 ..     251     301 .. 0.93
   2 ?   -0.7   0.0      0.65   6.8e+02      98     129 ..     447     478 ..     409     486 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.9e-09
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveer 31 
                   Dv+VvGGgp+G++AA   a++Ga+vlL+e+ 
    KKY20827.1 251 DVIVVGGGPSGIIAAERLAESGATVLLIERG 281
                   9****************************96 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.65
  FAD_oxidored  98 aeagvtvllntrlvevekegkriesvtveske 129
                   + ++ t+ ln+++++v+++g++i++v v++++
    KKY20827.1 447 DADNFTLKLNAKATQVIRTGGTITGVLVANDD 478
                   67789999999999999999999999998765 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.4   1.3e-07   0.00013       1      41 [.     251     292 ..     251     330 .. 0.86
   2 !    6.7   0.1    0.0044       4.6     161     206 ..     451     504 ..     435     643 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.3e-07
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSE CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrns 41 
                 dv+++GGG  G+ +A  La+ g  V+l+e+g  a++ ++g++ 
  KKY20827.1 251 DVIVVGGGPSGIIAAERLAESGatVLLIERG-SASTVQTGATD 292
                 8******************************.88878888765 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0044
                 -EEEESECEEEEEEEETCEEEEE....EECTEEEEEEEE...EEE--GGGHH..H CS
         DAO 161 veilegtevtgleeedgkvwgve....rttpgendaada...vVnaaGawsd..l 206
                  ++ +++++t + +++g ++gv     + t+++   +++   vV+aaGa s+  +
  KKY20827.1 451 FTLKLNAKATQVIRTGGTITGVLvandDRTSEI-INIKTggkVVLAAGALSTprI 504
                 578889999998888999999998854333333.23455777*******987742 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.4   5.5e-09   5.8e-06       1      33 [.     250     282 ..     250     286 .. 0.94
   2 ?   -0.5   0.0      0.37   3.9e+02     120     169 ..     447     503 ..     431     509 .. 0.58

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 5.5e-09
                  -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like   1 kdviviGgGaAGlmaAisaakrgkrVlllekak 33 
                  +dviv+GgG++G+ aA+++a+ g+ Vll+e+++
   KKY20827.1 250 YDVIVVGGGPSGIIAAERLAESGATVLLIERGS 282
                  59****************************986 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.37
                  HHHT-EEE-S--EEEEECETTE.EEEEE.....TTEEE...EESEEEE----SS-GG CS
  HI0933_like 120 keagvklrletevksvekeedgkfrvkt.k...seeel...eadklvlAtGGlSiPk 169
                  ++ + +l+l+ + ++v ++ + +  v + +   ++e +   +  k+vlA G lS P+
   KKY20827.1 447 DADNFTLKLNAKATQVIRTGGTITGVLVaNddrTSEIInikTGGKVVLAAGALSTPR 503
                  555666666666666666665555555522111122221114568999999999997 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.7   4.3e-09   4.5e-06       2      40 ..     250     288 ..     249     295 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 4.3e-09
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp 40 
                    +dV++VG+Gp+G+++a  L+e G  v+l+e+ s  +v++
     KKY20827.1 250 YDVIVVGGGPSGIIAAERLAESGATVLLIERGSASTVQT 288
                    79*****************************98776654 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.5e-08   1.6e-05       1      31 [.     250     290 ..     250     342 .. 0.79
   2 ?   -0.7   0.0      0.65   6.8e+02      93     114 ..     481     505 ..     427     526 .. 0.54

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.5e-08
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEE..........T CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........x RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlve..........l 31 
                  +dv+v+GgGp G+ aa++la++ga v+l+e          +
   KKY20827.1 250 YDVIVVGGGPSGIIAAERLAESGATVLLIErgsastvqtgA 290
                  69***************************644333333333 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.65
                  TCEEEEEE.SEEEE---E..EE-BC CS
                  xxxxxxxx.xxxxxxxxx..xxxxx RF
  Pyr_redox_2  93 gdeekiay.dklvlAtGs..sprdl 114
                  ++  +i+  +k+vlA G+  +pr+l
   KKY20827.1 481 SEIINIKTgGKVVLAAGAlsTPRIL 505
                  2222222245666666643355544 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   1.5e-07   0.00016       1      29 [.     254     282 ..     254     307 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.5e-07
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrd 29 
                    +vG+G sG  aA +La+ g+ vll+e+++
     KKY20827.1 254 VVGGGPSGIIAAERLAESGATVLLIERGS 282
                    8*************************986 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   1.1e-07   0.00012       1      44 [.     251     300 ..     251     328 .. 0.85
   2 ?   -3.0   0.1       2.8     3e+03     117     150 ..     458     498 ..     447     506 .. 0.61

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.1e-07
                 CEEEE-SSHHHHHHHHHHHHTT--EEEE......ES-GGGTT--SSSSEE CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLi......thkldtiaelsCnpsi 44 
                 dviV+GgG +G+ AA  +a++Ga vlLi      t +++   +ls n+s+
  KKY20827.1 251 DVIVVGGGPSGIIAAERLAESGATVLLIergsasTVQTGATDTLSWNDSL 300
                 8***************************9999887777777777777776 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.8
                 -EEEEEECTTEEEEEEETTS-EEEEC.......EEEE--TT CS
        GIDA 117 eveeliveekkvkgvvtedgetikak.......avviatGt 150
                 +++++i + ++++gv+ +++   ++        +vv+a+G+
  KKY20827.1 458 KATQVIRTGGTITGVLVANDDRTSEIiniktggKVVLAAGA 498
                 45555566777788776665544444333355677777776 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   1.3e-06    0.0014      16      50 ..     248     281 ..     237     290 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.3e-06
                 TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4  16 aesDvvivGaGssGLtaayylakkpdlkvailers 50 
                    Dv++vG+G+sG+ aa  la++ +  v+++er 
  KKY20827.1 248 STYDVIVVGGGPSGIIAAERLAES-GATVLLIERG 281
                 567*********************.********85 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   3.7e-06    0.0039       1      33 [.     253     284 ..     227     295 .. 0.81
   2 ?   -2.7   0.0       2.5   2.7e+03      69     113 ..     425     468 ..     397     514 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.7e-06
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkgnig 33 
                  i++G+GP G+ aa  l ++g  ++l +E+g+++
   KKY20827.1 253 IVVGGGPSGIIAAERLAESGA-TVLLIERGSAS 284
                  678888888888888888888.68888888654 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.5
  Pyr_redox_3  69 pafslkeeklsrkealeYlrevaksfelpiklfeeVesvkkedeg 113
                  pa+s+ + k ++  +  Yl  v +  +   kl+ + ++v +++++
   KKY20827.1 425 PAWSILNSKRAGP-VRTYLPLVFDADNFTLKLNAKATQVIRTGGT 468
                  5555555553333.5667777777777777777777777665432 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.2   4.5e+03     179     200 ..      43      64 ..      35      65 .. 0.69
   2 !   17.1   0.1   2.1e-06    0.0023       1      40 [.     251     289 ..     251     312 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.2
  Lycopene_cycl 179 veqklkgltFlYalPldsdrll 200
                    + q  +g++F+ alP d+++ +
     KKY20827.1  43 NTQISGGYSFGIALPEDPTTDF 64 
                    3444499********9998755 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 2.1e-06
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieasp.sllfpn 40 
                    Dv+v+G+Gp g+  A+rl  a+ g  v+lie +  s + ++
     KKY20827.1 251 DVIVVGGGPSGIIAAERL--AESGATVLLIERGSaSTVQTG 289
                    9*****************..99********97651444444 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.4   1.1e-05     0.012       1      43 [.     251     290 ..     251     302 .. 0.91
   2 ?   -1.9   0.0       1.1   1.1e+03     113     189 ..     406     482 ..     386     493 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.1e-05
                     EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS---SS-E CS
  Trp_halogenase   1 kivivGGGtaGwlaAaalakalkgklevtlveseeigtvgvGe 43 
                     ++++vGGG++G +aA  la+ +   ++v+l+e     tv+ G 
      KKY20827.1 251 DVIVVGGGPSGIIAAERLAESG---ATVLLIERGSASTVQTGA 290
                     699*****************99...89*******999999996 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.1
                     TT--S-HHHHH-SCHHHHHTTB-SB-TT..S-B-S--EEEE-HHHHHHHHHHHHHHCT-EEEE--EEEEEE-TTS-EEE CS
  Trp_halogenase 113 rgaaeeledysleavaakakkfsprekd..glsalsyAyhldaalyakfLrrvaearGvtrvegkvvevqldedgrves 189
                       + +++++ + +++a  +   s ++++  g   +   + +da ++   L+ +a+a  v r+ g+++ v + +d+r ++
      KKY20827.1 406 WTQVDSIKEPNAKTKAFSQPAWSILNSKraGPVRTYLPLVFDADNFT--LKLNAKATQVIRTGGTITGVLVANDDRTSE 482
                     45555666666666666666665555554444556667789999985..88899999999******9999999877655 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.3     4e-05     0.042       2      33 ..     252     283 ..     251     295 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4e-05
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdk 33 
                 v+vvGgG +g+ +A+ lae g+ V ++er++ 
  KKY20827.1 252 VIVVGGGPSGIIAAERLAESGATVLLIERGSA 283
                 89***************************875 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00018      0.19       2      33 ..     254     280 ..     253     297 .. 0.80
   2 ?   -1.4   0.0       1.9     2e+03      51      78 ..     648     675 ..     634     702 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
  NAD_binding_9   2 ivGaGprGlavlerLlarakkkspleitlfdp 33 
                    +vG+Gp+G+ ++erL+++       ++ l+++
     KKY20827.1 254 VVGGGPSGIIAAERLAESG-----ATVLLIER 280
                    8***************994.....66666666 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.9
  NAD_binding_9  51 llNvpasemslftddpptfaeWlrerga 78 
                     +N+p  ++ +     ++f +Wl + ++
     KKY20827.1 648 VVNSPWLNTDADRAAMTNFLQWLLDTSN 675
                    5677777777777777889999877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       994  (0.0554409); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.99u 0.38s 00:00:01.37 Elapsed: 00:00:00.58
# Mc/sec: 4571.24
//
Query:       KKY20828.1  [L=404]
Description: putative mitotic checkpoint protein prcc [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-29  104.4  35.7    7.6e-28   98.8  35.7    3.2  1  PRCC      Mitotic checkpoint regulator, MAD2B-interacting


Domain annotation for each model (and alignments):
>> PRCC  Mitotic checkpoint regulator, MAD2B-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8  35.7   4.2e-32   7.6e-28      10     214 .]     213     404 .]       4     404 .] 0.85

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 4.2e-32
        PRCC  10 assssaaaksaptisyeplvssapeaeeseeedppetepepasqpeaenadleakkaaksseamvpepteqdpvkensknypgyyllpsgsqqpqedas 108
                 ++ss++++++a + +  p  +++p+ + s  + + + +++++ ++++++a++e    + s++++ +ept+++         p+++  +s++q+ q++a+
  KKY20828.1 213 ERSSAPSPSPAISLAVPPPAPTPPKPKVSLFSMNSGVDSSLPITDTTSQAEYEPLVYTTSETTTTEEPTPSSL--------PSTKSRQSQPQTLQSIAT 303
                 2333333333333333444444444444444444455555555555555544444333333334444444444........777777777888888*** PP

        PRCC 109 dlnlddealrqLlGrrggnrkreeikeakiieinedeelkaneqwlakalteekaekkgnpvrgqakrKHQltyLahqAkeneeeLeeswAenrrnRkq 207
                 dlnl  ++ rqL+Gr+  +++ ++ ++a+ii++n+d+e++ane+++a++++e ++   +++v+++a++KH+l++L+++A+ + e+Lees+A++rrn+ +
  KKY20828.1 304 DLNLTPSQQRQLFGRQ--SKNPTSSNAANIINFNTDAEYAANEALRASGEAEANQ---HRNVKAIAPGKHSLKQLINNASGQAEALEESFAQGRRNKME 397
                 ****************..6799999999*********************988865...***************************************** PP

        PRCC 208 aqaKYGF 214
                 a++KYG+
  KKY20828.1 398 AGSKYGW 404
                 ******* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.51
# Mc/sec: 2361.08
//
Query:       KKY20829.1  [L=313]
Description: putative iron-dependent peroxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-85  287.6   0.0    1.2e-85  287.4   0.0    1.0  1  Dyp_perox  Dyp-type peroxidase family


Domain annotation for each model (and alignments):
>> Dyp_perox  Dyp-type peroxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.4   0.0   6.7e-90   1.2e-85       2     326 ..       9     306 ..       8     307 .. 0.92

  Alignments for each domain:
  == domain 1  score: 287.4 bits;  conditional E-value: 6.7e-90
                 SSSSS-C-SEEEEEEEEE-TTCHHHHHHHHHHHHHHHHHHHHCCCCSCSSHCTCCCTHSTTTT-EEEEEEEHHHHHHTTSCGGS-TTCS----ETTTTE CS
   Dyp_perox   2 agiltplqaaaifvaldvkakdkakleallrkltarverLtagekappadtgealkarkpdsrLtvtvgiGsslfdrlglkekrpkeLkplpelkndkl 100
                 + + +pl+++a f++l ++++   +++++ r+  a++++L           ++ +  r+  +  ++tvgiGs+++dr+     rp eL+p+pe+k++ +
  KKY20829.1   9 QHVDAPLTQSATFLVLSIAENP--EATRTARSTLANIDDL-----------VKNVTIRDLSALFACTVGIGSDVWDRVTGL-PRPVELHPFPEVKGPVH 93 
                 5688999999999999999855..3344555555555554...........45556677778899*************888.9**************** PP

                 EGGGS--SEEEEEEESSHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEHCTSTTCB-TTSSBSSTTS--TCHHHHHHHS-CSSSGGGTT-EEEEEEEEEE CS
   Dyp_perox 101 dapstdgDlliqiraeredvafealrailkafgdavevrdevkGFrsssgkvtarnLlGFvDGTeNpkgeeakeavvlikdedewaagGsYvvvrkirh 199
                 +a st+gDll++ir+er d++fe+ r++++ +gdav+v+de+ GFr+    ++ r+LlGFvDGT+Np g     + +l+++ed  a gGsYvv++k+ h
  KKY20829.1  94 TAVSTPGDLLFHIRSERRDLCFEFERQLMDLLGDAVTVVDETVGFRY----FDVRDLLGFVDGTANPVGPAVPSS-ILVAEEDISASGGSYVVIQKYAH 187
                 ***********************************************....*******************99997.*********************** PP

                 -HHHHTTS-HHHHHHHHTB-TTT--BTTTTSTTSTTTGSSS-TTSHHHHHSGESTTTEC--EE--EEEEEEE-TTSSCEEEEEEEEEESSCHHCHHHHH CS
   Dyp_perox 200 dleaWdrlslkeQedviGRrKedgaeldddkeaddseekvipkdsHvrlaklkedgkglkilRralsygeGldkvgkldaGllFiaYqrtlenteqmlq 298
                 dl+aW +l++++Qe++iGR+K d++el+d+         +  ++sH +la+++e+g + +ilR+++++g+     +++++G++Fi+Y+r+l+++e mlq
  KKY20829.1 188 DLKAWRSLPTEKQEAIIGRTKLDNIELEDA---------DSGQQSHKTLASIEENGDQFEILRDNMPFGS----PASGEFGTYFIGYSRRLWVIERMLQ 273
                 ***************************888.........8999***************************....7778********************* PP

                 HHH.....SCB-GGGGCEEEEEEEEEEE-BHHH CS
   Dyp_perox 299 rml.....gktdaLlefikavtgglFfapsgvk 326
                 rm+     g +d+Ll+++k+ tg++Ff+ps+ +
  KKY20829.1 274 RMFlgnppGLHDRLLDYSKPLTGTTFFMPSASM 306
                 *****************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2217.66
//
Query:       KKY20830.1  [L=229]
Description: putative mitochondrial inner membrane metallopeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-34  119.1   0.3    2.6e-34  118.7   0.3    1.1  1  Peptidase_M48  Peptidase family M48
  ------ inclusion threshold ------
      0.052   12.8   0.0      0.079   12.3   0.0    1.2  1  UbiA           UbiA prenyltransferase family


Domain annotation for each model (and alignments):
>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.7   0.3   2.9e-38   2.6e-34       8     195 ..      21     195 ..      16     196 .. 0.87

  Alignments for each domain:
  == domain 1  score: 118.7 bits;  conditional E-value: 2.9e-38
                    HHHHHHHHHHTT-..-EEEEEEE-GGGT.-EEEEESSS-EEEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHT CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48   8 kevveelakeaglpkpltkvyvvnspkr.NAFalgggknkrivltdgLlkqllseeelaaVlGHElGHikhrhsvvslivsllasillllglalli 102
                    ++vv++l+ + gl+++ + v v+++++  NAF+++gg   +i++++g+lk + +e+ laaVlGHE++H ++rh++++++  l a  + ++++a+++
     KKY20830.1  21 QRVVSRLVYANGLEQQRWVVHVIRDDDQaNAFCMPGG---QIFVFTGILKYTRDEDGLAAVLGHEISHKVARHHAEQMSGRLWAF-V-FILAAAVL 111
                    899**********9999******988777********...**********************************99998876654.3.44444566 PP

                    T-SHHHHHTT--S---HHHHHHHHHHTTHHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHTT--S---HHHH.HHS-SS--HHHHHHHHHH- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48 103 sraeedaagafldalavliglliillflalSRkrEyqADeagvellkrakdlvraliklakdlerqdvsaslrs.ellstHPplleRiqalkel 195
                    +  +++ +++++           ++  l  SR++E +AD++g+ +++++++++ a+   ++++ +++ ++ + + +llstHP +++R++a++++
     KKY20830.1 112 GDVSSNLSNTIYN----------LVFDLRNSRTQEAEADQMGLLMMAKSCYDPHAAEVYWRTMVQMEHDKHQSTpQLLSTHPASENRVKAIEHW 195
                    7777777777762..........223459**********************************999888887777****************998 PP

>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.8e-06     0.079      17      56 ..      97     136 ..      88     138 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.8e-06
        UbiA  17 pdlllllllllgtllaaaaanalNdyfDreiDadmertpn 56 
                   l+ ++++l++++l  +++n+ N ++   +D +++rt++
  KKY20830.1  97 GRLWAFVFILAAAVLGDVSSNLSNTIYNLVFDLRNSRTQE 136
                 45688999999999***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1526.20
//
Query:       KKY20831.1  [L=371]
Description: putative glycoside hydrolase family 79 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-05   25.8   0.0    4.9e-05   24.2   0.0    1.8  2  Glyco_hydro_79C  Glycosyl hydrolase family 79 C-terminal beta


Domain annotation for each model (and alignments):
>> Glyco_hydro_79C  Glycosyl hydrolase family 79 C-terminal beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.41   7.4e+03       4      25 ..     150     173 ..     147     200 .. 0.64
   2 !   24.2   0.0   2.7e-09   4.9e-05       1      45 [.     300     346 ..     300     362 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.41
  Glyco_hydro_79C   4 vy..esgklarvvliNleaynsts 25 
                       y   +gk+ r  l+N  +  +++
       KKY20831.1 150 YYqtTGGKPLRSTLLNHTDTEAKT 173
                      443344777777777766655544 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 2.7e-09
  Glyco_hydro_79C   1 aYavyesgklarvvliNleaynststg........rpsvtvtlsglseggksv 45 
                      aYa y++g+l+++v++Nle +n+t+t+        +ps + +        ++ 
       KKY20831.1 300 AYAGYHHGELSKIVILNLEFWNQTVTEiikskdtdKPSSSSDK------TTTT 346
                      8****99*******************87755555522222222......3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2536.06
//
Query:       KKY20832.1  [L=502]
Description: putative mfs multidrug transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-31  108.7  34.0    2.8e-31  108.7  34.0    1.9  2  MFS_1     Major Facilitator Superfamily
      4e-09   35.4   3.0      4e-09   35.4   3.0    1.7  2  TRI12     Fungal trichothecene efflux pump (TRI12)
    8.1e-08   31.5  14.9    8.1e-08   31.5  14.9    2.4  2  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
        4.4    7.8   9.2       0.33   11.4   2.3    2.6  2  DUF5084   Domain of unknown function (DUF5084)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7  34.0   6.3e-35   2.8e-31       2     352 ..      66     451 ..      60     452 .. 0.79
   2 ?    2.6  12.1     0.011        51      70     179 ..     381     493 ..     371     501 .. 0.77

  Alignments for each domain:
  == domain 1  score: 108.7 bits;  conditional E-value: 6.3e-35
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigl....lltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqG 96 
                 +l+af ++++   + p+++  ++ +l  ++++ +     l+t+  +g a++ l++++ls+ fGr +v+ ++  lf+++++l+++++s +l++++r+l+G
  KKY20832.1  66 ALTAFTVTFTCISVVPIAS-RITYELS-NGDAKSSasvlLVTIWEFGEAAGPLVIAPLSEVFGRYPVINVTNGLFISAIVLAALCQSTPLFIAARALTG 162
                 3444444444444555555.4455544.333333233369999***********************************66666679989********** PP

       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee....... 188
                 l+  a++ +  a++ d+f +e++g+a+++++++  +G ++gp+++g++a+s gWr+v ++ ai++  + ++fl  ++e+++    ++++ ++       
  KKY20832.1 163 LAV-ASNVLNPAIVGDMFIPEQQGSAMSIIMLAPLIGGAIGPAISGAVAQSSGWRWVLWMSAILAGACELVFLTSFRETYKVTILQRKAARLrketgdt 260
                 **5.9***************************************************************9999999999999999999999988777766 PP

       MFS_1 189 .........kgtgpaplvp.....awkallkdpvlw........illialllfffgfsglltllplylqevlglsglllaglllallalvgailallag 265
                          +               + ++ ++ v++        + l+++++f+ ++++++t+lp +l + +g+s   l+g ++ ++++++ i+ +++ 
  KKY20832.1 261 tlrtafetdE--------AlksrsFLNSIMRPVVVFsssgvlqvMSLFGSVYFT-FYYIMSTTLPDILEQIYGMS-PALTGSAFIIFSIGSTISVIICN 349
                 6666664442........033333444555555553444343455666666664.8888****************.7999999**************** PP

       MFS_1 266 rlsdr............lgrrrrlllallllllaalglallavtssavllllvlvl....iGfglgfvfpsllalasdlappeeagtasglfntagslg 348
                  l+d+             +++ rl l +++++++ l+++  +++ +  l l +l+l    +G++l + + +l+a+++d +   ++++a+ ++ + ++l+
  KKY20832.1 350 LLLDKiyiklrdshkgiEQPEYRLPLVIVGAFTLPLIVISYGWIVELRLPLPLLLLsvglLGLTLLLSTLPLMAFVVDAFR-LYSASAMTAVIVSRCLM 447
                 *****99888888777666699999999999999999999999966666665555553336666666699**********5.77888888888999998 PP

       MFS_1 349 galg 352
                 + + 
  KKY20832.1 448 STFL 451
                 8775 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.011
       MFS_1  70 llfalglllll..fa....sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsl 162
                 +++ l   +++  ++     +l+lll++  l Gl+  +++   +a+++d f     ++a+  + ++  l + + pl+   +++ +g  ++f +l+++sl
  KKY20832.1 381 FTLPLI--VISygWIvelrLPLPLLLLSVGLLGLTLLLSTLPLMAFVVDAFRL-YSASAMTAVIVSRCLMSTFLPLVTKPVIEEIGHGWAFTLLGALSL 476
                 222222..2221232354556778888888***********************.********************************************* PP

       MFS_1 163 lafvlfllllpeepper 179
                  ++ + +l ++  ++ r
  KKY20832.1 477 CLAPIPALIFRYGHKWR 493
                 **998777776555444 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   3.0     9e-13     4e-09      42     235 ..      61     256 ..      38     263 .. 0.74
   2 ?   -1.8   0.4      0.17   7.7e+02     186     218 ..     294     325 ..     273     356 .. 0.49

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 9e-13
       TRI12  42 vvasfaafslnvvatyfvlqasasalpnilqd.vgqsensslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamt 139
                 +va +a  ++ v+ t + +   as +   l +   +s  s l+ t+w  g+a   lv+  l++ fgr p++ +t  l +   ++ + ++    ++aa +
  KKY20832.1  61 IVALLALTAFTVTFTCISVVPIASRITYELSNgDAKSSASVLLVTIWEFGEAAGPLVIAPLSEVFGRYPVINVTNGLFISAIVLAALCQSTPLFIAARA 159
                 66666666666666666666666666655544156788999*********************************988766555566666677789999* PP

       TRI12 140 llgvaagpagasplfvgelmsnktkflgllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivv.wyyppsfaqlhgkkvrkree 235
                 l g+a       p +vg+++    +   + i+ +  ++  +++p +   +a    wrw++++  i++  + l+ +  +     ++ l+ k +r r+e
  KKY20832.1 160 LTGLAVASNVLNPAIVGDMFIPEQQGSAMSIIMLAPLIGGAIGPAISGAVAQSSGWRWVLWMSAILAGACELVFLTsFRETYKVTILQRKAARLRKE 256
                 ******************99988888777666655555566********************998876544333332033333444555565665555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.17
       TRI12 186 gqrlaiqgswrwifyiyiitsaiavllivvwyy 218
                  q +++ gs  + fy yi+ +++  +l  ++  
  KKY20832.1 294 LQVMSLFGSVYFTFY-YIMSTTLPDILEQIYGM 325
                 344555555444444.34333333333333332 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5  14.9   1.8e-11   8.1e-08      34     213 ..      88     257 ..      59     355 .. 0.76
   2 ?   -2.5   0.2       0.4   1.8e+03     386     426 ..     435     475 ..     421     482 .. 0.77

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 1.8e-11
                 T--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS- CS
    Sugar_tr  34 lsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiAp 132
                 ++ s+++   +s+ s l+v i  +G+++G l++ +l+++fGR +++ +++ lf+ ++vl a+++   s+ ++i++R l+G++v + +vl P  ++ +  
  KKY20832.1  88 YELSNGDA--KSSASVLLVTIWEFGEAAGPLVIAPLSEVFGRYPVINVTNGLFISAIVLAALCQ---STPLFIAARALTGLAV-ASNVLNPAIVGDMFI 180
                 44445444..468899************************************************...99**************.6799*********** PP

                 SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHH.HHHGGGS---HHHHHHTT-HHHHHHHHHH CS
    Sugar_tr 133 kklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpalll.lilllflPESPrylvekgkeeeakevlak 213
                 ++  g  +s+  la  +G  ++  +  +++++s+   wr+ l++++++a +  l++l+ ++E+  y v+  ++++a+   ++
  KKY20832.1 181 PEQQGSAMSIIMLAPLIGGAIGPAISGAVAQSSG---WRWVLWMSAILAGACeLVFLTSFRET--YKVTILQRKAARLRKET 257
                 **********************999999999999...************98736677889999..55554444444433333 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.4
                 HHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHH CS
    Sugar_tr 386 kalaiavavnwlanflisllfpiiteaigggyvflvfagla 426
                 +a++ + ++  l++ +  l+++ + e ig+g+ f + ++l 
  KKY20832.1 435 SAMTAVIVSRCLMSTFLPLVTKPVIEEIGHGWAFTLLGALS 475
                 57777777888888888888888888888888887766655 PP

>> DUF5084  Domain of unknown function (DUF5084)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.3   7.3e-05      0.33      50     110 ..     276     339 ..     267     360 .. 0.82
   2 ?   -1.2   0.6      0.56   2.5e+03       3      49 ..     390     438 ..     372     479 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.3e-05
     DUF5084  50 kalesiakptiilsiigiy.ivavlmsil..fdivlkddfleiglklygesfnivskplliiai 110
                   l+si +p +++s  g+  ++ ++ s+   f++++   + +i  ++yg s  + +   +i++i
  KKY20832.1 276 SFLNSIMRPVVVFSSSGVLqVMSLFGSVYftFYYIMSTTLPDILEQIYGMSPALTGSAFIIFSI 339
                 4589*************972456776775226889*******************9999999987 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.56
     DUF5084   3 ytwwillaiagilsllsv..ygfilalgafgvlalnvvwltvytpkkns 49 
                 y+w + l +   l llsv   g+ l l ++ ++a+ v  + +y+    +
  KKY20832.1 390 YGWIVELRLPLPLLLLSVglLGLTLLLSTLPLMAFVVDAFRLYSASAMT 438
                 5666666665555555542246666666666666666555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.37s 00:00:01.10 Elapsed: 00:00:00.58
# Mc/sec: 2603.22
//
Query:       KKY20833.1  [L=666]
Description: putative tyrosinase precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-34  119.9   1.6    1.9e-34  119.9   1.6    1.7  2  Tyrosinase   Common central domain of tyrosinase
    3.8e-27   95.4   0.0    9.1e-27   94.1   0.0    1.6  2  Tyosinase_C  Tyosinase C-terminal domain


Domain annotation for each model (and alignments):
>> Tyrosinase  Common central domain of tyrosinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.9   1.6   2.1e-38   1.9e-34       2     221 ..      59     327 ..      58     328 .. 0.71
   2 ?   -2.2   0.1      0.47   4.2e+03     125     162 ..     445     482 ..     400     516 .. 0.46

  Alignments for each domain:
  == domain 1  score: 119.9 bits;  conditional E-value: 2.1e-38
                 TSHHHHHHCCSSS--SSTSSSSS-TSSTTHHHHHHHHHHHHHHHH..HHH...........HHH...THCSEEEB--TSS-....-SS--HHHH-SEEE CS
  Tyrosinase   2 ssydqlagiHgipftewkeeeecaHgnalFltWHRaYlllfEqal..rei...........cgy...apdvtlPYWDwaadksspldespeslggdgat 84 
                 + y++lagiHg+p + w          +    W R+Yl+l+Eq++  +++           + y    ++++lPYWD+ ++ ++ +  +  +l g++++
  KKY20833.1  59 NGYNELAGIHGLPTKFW--------DDVKVSEWDRPYLALVEQTIylKMLdiaagfndphkATYikaIEKFRLPYWDYYRPRDKDAVFPGITLPGEKTQ 149
                 679**************........678889**************763337788888888833345579************555666666666666666 PP

                 -TTCCGE.................-EEEEE-TTT--BESS.........SSS-........G-SBTTCTCB-CTS.-CGGGGGS-BTCSSHHHHHH-GG CS
  Tyrosinase  85 ipeenls.................ggcvisnplakytlkk.........klgp........kakgtlkseenkla.anprclkrenaelsaelatassl 148
                  + ++++                 + ++++npl+++++ +         +  +        +  +t+   +++++ a+++ +kr n  l+++   + +l
  KKY20833.1 150 FDFDFRMpdifnvenvmlrrspdnKLVSVANPLYTFKWDDdhgipktqwD--DpqlglpesTFSRTQTVRWSPQQgATKHDVKRLNGVLNNRREGSAAL 246
                 6666666777778888888888888999**********888777665440..14444456645555555555443145555666677777777777555 PP

                 G.HHHHH--SHHHHHHHHHH--------........HHHHHHHHHHHHHESSSTTSTTCGGGSTHHHHHHHHHHHHHHHHHH CS
  Tyrosinase 149 e.ellkksesytsfsntlegkkskeesa........lespHnavHvwvGangdmgdvataafDPiFflHHaniDrlwaiWqa 221
                 + + l+++e y+ f+  ++++ ++++          + s+H++ H+w+G++g+m+++++aafDP+F++HH++iDrl+a+Wqa
  KKY20833.1 247 MlR-LMHDEPYALFDRVATDQINHTGDItegasgslEGSIHGNYHNWIGGSGHMSHPSVAAFDPVFWFHHCQIDRLFAVWQA 327
                 542.33355555555555544433333345555555566******************************************7 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.47
                 S-CGGGGGS-BTCSSHHHHHH-GGGHHHHH--SHHHHH CS
  Tyrosinase 125 aanprclkrenaelsaelatassleellkksesytsfs 162
                 +a+ + +++++a++  + a++ s+++ +++++ + +++
  KKY20833.1 445 KATANGAENKKAQVPLQAAAPPSVSSRVATTSAVPELE 482
                 22222222222222222222222222222222222222 PP

>> Tyosinase_C  Tyosinase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.3   1.2e+04      64      74 ..     453     463 ..     426     497 .. 0.54
   2 !   94.1   0.0     1e-30   9.1e-27       1     122 []     504     638 ..     504     638 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.3
  Tyosinase_C  64 lvtgqvpLtsa 74 
                    ++qvpL++a
   KKY20833.1 453 NKKAQVPLQAA 463
                  33444444433 PP

  == domain 2  score: 94.1 bits;  conditional E-value: 1e-30
  Tyosinase_C   1 dwvanvrvekyalggsftihfflGdpp...edpttwatapnlvGsvavfasaeeegcenc..qaaskvlvtgqvpLtsaLler..a.......geles 84 
                  +w+++  v+++a++g+ft +ff+G  +   +dp++++t+p l+Gs ++f  a ++ c+nc  q+a+++l+  +vp+t+ Ll+           ++l+s
   KKY20833.1 504 EWYIDFAVSRHAFDGPFTFYFFIGPKNsltTDPHSYPTDPCLAGSSHIF-VAPSSVCDNCgqQSAAGQLAADTVPITPLLLDYmgKneilspdETLQS 600
                  8***********************54344488*****************.6899*******99999****************7541456777788*** PP

  Tyosinase_C  85 ldpeeVepyLkknLkwrvvkadgeevdpeelpsLkvsv 122
                  l+pe+V p+L+k Lkwr+v++ +++ dp+ l+++k sv
   KKY20833.1 601 LKPEHVNPFLEKYLKWRIVSSGEHKEDPRLLETFKLSV 638
                  ********************9889999999***99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (666 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.47
# Mc/sec: 4240.86
//
Query:       KKY20834.1  [L=1099]
Description: putative dna ligase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-58  196.1   0.5    3.3e-56  190.2   0.5    2.2  1  DNA_ligase_A_M  ATP dependent DNA ligase domain
    3.5e-43  147.9   0.1    7.1e-43  146.9   0.1    1.6  1  DNA_ligase_A_N  DNA ligase N terminus
      6e-26   90.9   0.0    2.4e-25   89.0   0.0    2.1  2  DNA_ligase_A_C  ATP dependent DNA ligase C terminal region
    4.7e-12   45.8   7.8    9.4e-12   44.9   7.8    1.5  1  CFEM            CFEM domain
    2.9e-05   24.5   0.1    4.6e-05   23.8   0.1    1.3  1  RNA_ligase      RNA ligase


Domain annotation for each model (and alignments):
>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.2   0.5   9.2e-60   3.3e-56       1     204 []     702     925 ..     702     925 .. 0.94

  Alignments for each domain:
  == domain 1  score: 190.2 bits;  conditional E-value: 9.2e-60
                     -EEEEEESCHHHHHHHTTTSEEEEEEEESSEEEEEE..................E.ETTEEEEEETTS-B-GGGCHHHHHHHHHHBSTTESEEEE CS
  DNA_ligase_A_M   1 pmLAeslksiekalkkleekafivEiKyDGeRaqvh..................k.egdkvklfSRrlkditaakpelvkalkeafkkdeksvil 76 
                     pmLA+++ksi ++l+++e+k+f++E+KyDGeRaq+h                  k  ++   +fSR+++d+++++p+++ +l++++k++++s++l
      KKY20834.1 702 PMLAKPTKSITEVLDRFEGKDFTCEYKYDGERAQIHyvapdsihqypsaqetlnKaTKGLSAIFSRNSEDLSKKYPDIFAKLQTWIKPETTSFVL 796
                     9**********************************9777777777776666555335566789******************************** PP

                     EEEEEEEETTTTCBEHHHHHCHHHHCHCCTHHHHHHSEEEEEEEEEEEETTEEHTTSCHHHHHHHHHHHB--BTTTEEE--EEEESSHHHHHHHH CS
  DNA_ligase_A_M  77 DGElvavdketgeilpfqklasrkkkkkkveeklkeaelclfvFDiLyldgesltdeplkeRrklLeeilkesedrvelaeslevkdveeleell 171
                     D+E va+d   +++lpfq+l++rk+k++k e++  ++++c+f+FDiL+++ge  ++++l+eRr+lL+e++++ e+++ +a+  ++ d+ee++ ll
      KKY20834.1 797 DCETVAWDVVAKKVLPFQQLMTRKRKDVKAEDV--KIKVCVFAFDILFYNGEATVQRSLRERRELLHEAFTPVEGEFAFATYGNTADIEEIQLLL 889
                     ****************************99999..************************************************************ PP

                     HHHHHTTECEEEEEE...TT-CC-TTCEEEEEEEEE CS
  DNA_ligase_A_M 172 eeaiseglEGlvvKn...pdskYepgkrsknwlKvK 204
                     +e++++++EGl+vK+    ds Yep+krs+nwlKvK
      KKY20834.1 890 DESVKASCEGLMVKMldtNDSWYEPSKRSRNWLKVK 925
                     **************9888899**************9 PP

>> DNA_ligase_A_N  DNA ligase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.9   0.1     2e-46   7.1e-43       1     172 [.     440     634 ..     440     635 .. 0.99

  Alignments for each domain:
  == domain 1  score: 146.9 bits;  conditional E-value: 2e-46
                     BCHHHHHHHHHHCC.---HHHHHHHHHHHHHTS-..SHHHHHHHHHH....SS-CCCS------HHHHHHHHHHHHT--HHHHHHHHHHHS-HHH CS
  DNA_ligase_A_N   1 pFaelaelfekieestkkrlekrailanffrkvesagpedlypalrL....llPdydgreygigesllakalaealglskkkikdalakvgDlge 91 
                     p+a+l+++f+k+e  t+krle+++++++f+++v + +p+dl+p + L    l++dy g+e+giges ++ka+ae +g++ +++k++++k+gDlg 
      KKY20834.1 440 PYAALCTTFSKVEM-TTKRLEIIKYCSKFLQQVLRLTPNDLLPSIQLminkLAADYTGIELGIGESFIMKAIAESTGRTLADVKTDHNKIGDLGL 533
                     799***********.999***************************************************************************** PP

                     HHHHHHCCHHHH------BHHHHHHHHHHHHH-.STTHHHHHHHHHHHHHHHS...................-HHHHHHHHHHHCT---SS--HH CS
  DNA_ligase_A_N  92 vaeevlskrstlakkspltieevnelLdklaaa.gkgsedekkkilkkllkra...................speEakyliriilkdlriglsek 166
                     va++++ +++t++k++ l ++ v+e L  +a+  g+gs+d+k++ +kkll++a                   +p+Eak+lir+++++lr+gl+e+
      KKY20834.1 534 VAAKSRMNQPTMFKPKALNVRGVHEGLLTIAKItGQGSQDRKIAGIKKLLSAAdvalagkgtkgvditqekgGPSEAKFLIRFLEGKLRLGLAER 628
                     *******************************999************************************************************* PP

                     HHHHHH CS
  DNA_ligase_A_N 167 tvldal 172
                     tvl al
      KKY20834.1 629 TVLVAL 634
                     ****99 PP

>> DNA_ligase_A_C  ATP dependent DNA ligase C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.8     1e+04      58      68 ..     781     791 ..     750     802 .. 0.54
   2 !   89.0   0.0   6.6e-29   2.4e-25       1      99 []     950    1063 ..     950    1063 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.8
                     HHTT..EEE-TT- CS
  DNA_ligase_A_C  58 ekrd..vWvePel 68 
                        +  +W++Pe 
      KKY20834.1 781 A--KlqTWIKPET 791
                     2..2358999986 PP

  == domain 2  score: 89.0 bits;  conditional E-value: 6.6e-29
                      GGGSEEEEEEEEEE..TTEEEEEEEE-SS--HHHHHHHHHHHG..GGEECTTCESS---HHHHTTEEE-TT-EEEEEESEEECTSSSTT.... CS
  DNA_ligase_A_C    1 rgglvgslllgvyd..dgkleyvgkvgtGfsdaeleelrkklk..elerkkppfaekvpeeekrdvWvePelvveVkfaeitasgkyka.... 85  
                      r++++g++ll++y+  ++ +e+v+++gtGfs+a leel+k+l+   +++ kp + ++  +++++dvW+e ++v+eVk a++t s++y+a    
      KKY20834.1  950 RTSVYGAFLLAAYNeeREVFETVCNIGTGFSEAILEELHKELSdlVIDKPKPFYDHSQVKNDQPDVWFEARKVWEVKTADLTMSPRYRAaiee 1042
                      5789**********65555***********************96555555556677778888999**************************** PP

                      .......EECT-EEEEE-TTS CS
  DNA_ligase_A_C   86 .......slRfPrfkrlReDk 99  
                             slRfPrf++ R+Dk
      KKY20834.1 1043 mglakgiSLRFPRFIQKRDDK 1063
                      ********************8 PP

>> CFEM  CFEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   7.8   2.6e-15   9.4e-12       2      66 .]      26      95 ..      25      95 .. 0.89

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 2.6e-15
                TTTS-GGGTCGGG---TT.SS..S-.TT-HHHHHH-HHHHHHHHHHHHHH--THHH..HHHHHHHHHHHH CS
        CFEM  2 lsalPkCaqdClaeavkk.ss.gCa.kddtaCiCtnaklqseitdCvtaaCtaeea..laavnaasslCa 66
                ls+lP+C+q C++++++  ++ gC+ ++d+aC+C+++++   i+dC++a C+ +e   + ++++ ss+Ca
  KKY20834.1 26 LSSLPSCGQLCINNMLNLaTQlGCSsSTDIACLCSKQNFGYGIRDCTNAVCQKNETaiSPVISFGSSVCA 95
                789***********99775779***9**************************776634589999999996 PP

>> RNA_ligase  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1   1.3e-08   4.6e-05       3     161 .]     723     925 ..     721     925 .. 0.64

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.3e-08
                 EEEEEE-SSEEEEEEEETT............EEEEETTCEBCTTTHHHHHHTHHHHHHHHHHHHH........ECCEEEEEEEES.SS........TTS CS
  RNA_ligase   3 vvvtEKlDGtnfriylvke............vgvasRsqilpfgeekfkefkrwaaalrkklkekla......neelilyGElighsi......kyggl 77 
                 + ++ K DG++++i++v+             ++ a+++         f+ +++   +++ ++ +kl+        +++l +E + + +      +    
  KKY20834.1 723 FTCEYKYDGERAQIHYVAPdsihqypsaqetLNKATKGLSA-----IFSRNSEDLSKKYPDIFAKLQtwikpeTTSFVLDCETVAWDVvakkvlP---- 812
                 78899************444775555566553333333333.....333333333334344444444677788667*********6664433452.... PP

                 S.....................EEEEEEEEEEECTTBECE--HHHH.HHHHHCCTB..EEEEE.SS...HHHHHCCC....H.HHHTC--EEEEEES.. CS
  RNA_ligase  78 pk....................efyvFdifdirdkeeqrylspdev.ealakglgtvpvlyegkfl...aaeellel...ll.skgnkrEGlVikpe.. 146
                                         ++Fdi+  +++ +    s +e+ e l + +  +pv +e+ f    + ++++e+   l+ s +  +EGl +k    
  KKY20834.1 813 -FqqlmtrkrkdvkaedvkikvCVFAFDILFYNGE-ATVQRSLRERrELLHEAF--TPVEGEFAFAtygNTADIEEIqllLDeSVKASCEGLMVKMLdt 907
                 .2333334466778889999889999999977744.444445555537777765..9999999998665444444448642257888********7766 PP

                 .SSSBE.TTE.BSEEEEE CS
  RNA_ligase 147 .selyk.nkg.raifKvk 161
                  ++ y+  k+ r+++Kvk
  KKY20834.1 908 nDSWYEpSKRsRNWLKVK 925
                 677777777799***997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1099 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1203  (0.067098); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.14u 0.34s 00:00:01.48 Elapsed: 00:00:00.54
# Mc/sec: 6138.96
//
Query:       KKY20835.1  [L=163]
Description: putative gnat family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-07   29.2   0.1    1.7e-06   28.3   0.0    1.6  2  Acetyltransf_1   Acetyltransferase (GNAT) family
    0.00012   22.0   0.0    0.00017   21.5   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    0.00022   21.6   0.0    0.00038   20.8   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.067   13.5   0.0       0.32   11.3   0.0    1.9  2  HTH_Tnp_1        Transposase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   3.7e-10   1.7e-06      55     116 ..      37      95 ..      16      96 .. 0.87
   2 ?   -2.9   0.0       1.8     8e+03      85      96 ..     106     117 ..     105     127 .. 0.72

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 3.7e-10
                     T.TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTT CS
  Acetyltransf_1  55 d.ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklG 116
                     + e ++++y+  l+V p+++++GlG +Ll+  +++a +e+i   +l   +  d+ +++Y++ G
      KKY20835.1  37 HmEGRRHIYLKNLFVLPSHQHRGLGITLLQWGLDHAGSEQIPN-FL---SATDRGHGMYKRAG 95 
                     2577899**********************************88.77...558899****8898 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.8
                     HHHHHHHTTESE CS
  Acetyltransf_1  85 leerareegikk 96 
                     lee+ar+ ++k+
      KKY20835.1 106 LEEWARKIEVKE 117
                     788888877755 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   3.8e-08   0.00017      49     111 ..      41     101 ..      23     113 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3.8e-08
  Acetyltransf_10  49 rdgshisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavge 111
                      r++ ++  lfV p+++++G+g  Ll+  +++a  ++i     + a++   ++Y++ G++ vg+
       KKY20835.1  41 RRHIYLKNLFVLPSHQHRGLGITLLQWGLDHAGSEQI--PNFLSATDRGHGMYKRAGMVSVGK 101
                      45558899***********************965544..689****************99975 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   8.4e-08   0.00038      25      73 ..      44      95 ..      23      96 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 8.4e-08
                    TCTEEEEE-GGGTTSSHHHHHHHH..TTSEEEEE.EEEETHH.HHHHHHHHTT CS
  Acetyltransf_7 25 aeitrlaVdpeyrgkGiGraLlea..aekgiile.qlelnae.kaikfYeklG 73
                     ++++l+V+p+++ +G+G  Ll+    + g + +    l+a+ + +++Y++ G
      KKY20835.1 44 IYLKNLFVLPSHQHRGLGITLLQWglDHAGSE-QiPNFLSATdRGHGMYKRAG 95
                    46677******************743223421.22233432237788999977 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.36   1.6e+03      59      72 ..      19      32 ..       6      34 .. 0.81
   2 ?   11.3   0.0   7.1e-05      0.32      28      53 ..     108     132 ..     104     151 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.36
   HTH_Tnp_1 59 eltaleeenrelkr 72
                 l++ ++ n+e++r
  KKY20835.1 19 ILKDFQQPNKEMRR 32
                48999999**9998 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 7.1e-05
   HTH_Tnp_1  28 evArrhgvspnqLykWrrqyregeea 53 
                 e Ar+ +v+++qL  W +q  e +++
  KKY20835.1 108 EWARKIEVKESQLGMWQKQE-EIMKS 132
                 78*****************6.43333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 1029.23
//
Query:       KKY20836.1  [L=605]
Description: putative terminal deoxynucleotidyl [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-20   72.7   0.3    8.2e-20   70.7   0.5    1.9  2  DNA_pol_B_thumb  DNA polymerase beta thumb
    1.2e-18   66.7   0.7    2.5e-18   65.6   0.7    1.6  1  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
    3.3e-15   56.3   0.0      9e-15   54.9   0.0    1.8  1  DNA_pol_B_palm   DNA polymerase beta palm
    3.1e-05   24.2   0.0    0.00033   20.9   0.0    2.2  2  HHH_8            Helix-hairpin-helix domain
  ------ inclusion threshold ------
       0.06   12.7   1.1       0.12   11.7   1.1    1.4  1  Glycoprotein_G   Pneumovirus attachment glycoprotein G


Domain annotation for each model (and alignments):
>> DNA_pol_B_thumb  DNA polymerase beta thumb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         1   3.7e+03      10      50 ..     224     300 ..     222     304 .. 0.51
   2 !   70.7   0.5   2.3e-23   8.2e-20       1      69 [.     532     602 ..     532     603 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1
                      HHHHHHHHHHHCTTEEEETTEEE...........................................ETCCCEEEC-S CS
  DNA_pol_B_thumb  10 tFnrdlRrlakkkglkLnssglrd...................ek.................gkaeddddgelveve 50 
                      +F  +l+++ k++ l+L++ g r                    e                  ++ +d+dd++ ++ +
       KKY20836.1 224 AFIAELQKIRKARILTLDEIGERAyatsissisaypyyishpaEIlqlpgcdtriaslwadwRATGDTDDERYIPAA 300
                      56677888888888888887776544444444444444333330033333333444445444444555555555555 PP

  == domain 2  score: 70.7 bits;  conditional E-value: 2.3e-23
                      HHHHHHS-HHHHHHHHHHHHCT.TEEEETTEEE.......ETCCCEEE.......C-.SSHHHHHHHCTS----GGGT CS
  DNA_pol_B_thumb   1 allyfTGsktFnrdlRrlakkk.glkLnssglrdekgkaeddddgelv.......ev.etErdvfelLglpyipPeeR 69 
                      a+l+++G +tF+rd+Rr+akk+ ++k++ssg+r       d+++g++v       ++ e+E+ v+e+Lg++++pP eR
       KKY20836.1 532 AVLGWSGATTFERDIRRWAKKEkQWKFDSSGIR-------DRATGQTVdlegpgkTWeEREKLVMEGLGIGWRPPGER 602
                      89*******************************.......777777666677777999*******************9 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.7     7e-22   2.5e-18       1      49 [.     313     363 ..     313     364 .. 0.96

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 7e-22
  DNA_pol_lambd_f   1 qlFtkvyGVGpktAkkwyak.Girtledlra.krakLtreqqiGlkyyeDl 49 
                      ++F+ ++GVG++tA+k+y   G++ ++d+ + ++++L+r+qqiGlkyy+++
       KKY20836.1 313 KQFYDIWGVGAETARKFYFTrGWKEMDDVIEfGWNELNRVQQIGLKYYDEF 363
                      69****************766*****************************9 PP

>> DNA_pol_B_palm  DNA polymerase beta palm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   2.5e-18     9e-15       2     113 ..     367     525 ..     366     526 .. 0.85

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 2.5e-18
                     EEHHHHHHHHHHHHHHHHHH-TT..........-EEEE-HHHHTT-SEESSEEEEEEBTTBSTTSS--HHHHHHHHHHHHHTTSEEEEEE..E-S CS
  DNA_pol_B_palm   2 iPreEvealealvkkaakeldpe..........vevivcGSYRRgaessGDvDvlitkkdakseskklkklleklvkklkkkgfltdsLavesge 86 
                     iPr+Eve+++++v ++a++  +           +  +++G YRRg+++sGDvD++++++d++     +++l+ ++v++l+++g +t++L+  +++
      KKY20836.1 367 IPRSEVETINQIVLDHARKCRNIprsaynttsdFVSVIVGGYRRGKDKSGDVDLILSHSDENM----THELVLDVVSALEQSGWITHTLTL-NTT 456
                     9************9888776543333544444467789999*******************999....4679999***************94.557 PP

                     SEEEEEEE---S..........................................SSTS-EEEEEEEEE- CS
  DNA_pol_B_palm  87 skfmGvcrlpee..........................................ekkelhrRiDlklvp 113
                     ++  G  +lp +                                          ++ ++hrR+D+ + p
      KKY20836.1 457 TSNRGQQTLPYRsaggghgfdsldkglvvwqdpnflnpstgsptttndaaasgiKNPNIHRRVDIIISP 525
                     788999999988899999999999999999999999999999999999999887578999999998765 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   9.3e-08   0.00033       1      63 [.     222     282 ..     222     286 .. 0.91
   2 ?    0.5   0.0      0.22   7.9e+02      31      62 ..     299     328 ..     295     330 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 9.3e-08
                 HHHHHHHHHHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHH CS
       HHH_8   1 NkeiadaLeeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaaki 63 
                 N+++++ L+++ + + l+  d+   raY++ +++i a+p+ i   +e + +lpg+  +ia  +
  KKY20836.1 222 NAAFIAELQKIRKARILT-LDEIGERAYATSISSISAYPYYISHPAE-ILQLPGCDTRIASLW 282
                 788899999999999999.89***********************887.***********9865 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.22
                 HHCCCCC-SS-HHHHTTHCTTSTT--HHHHHH CS
       HHH_8  31 AaraiealpeeitsleeeltklpgiGkkiaak 62 
                 Aar +++  e+++ l++ + ++ g+G+ +a+k
  KKY20836.1 299 AARELDNN-EDLKILKQ-FYDIWGVGAETARK 328
                 56666554.46666678.99**********98 PP

>> Glycoprotein_G  Pneumovirus attachment glycoprotein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.1   3.3e-05      0.12     190     262 ..     102     174 ..      95     175 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.3e-05
                     XXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.............XXX CS
  Glycoprotein_G 190 tikpkkkPklkttkkdtktlakklkkettikrtsketkkttktnittPqftvlssttskntertiqqeslhst 262
                     t +p kkPk++tt k+++t  + +k ++ +  ts   k++ +  ++  q   +   +s +  r  ++ slh +
      KKY20836.1 102 TARPIKKPKTQTTPKPARTPITYVKANPDTSSTSGIPKEQYNGILSRAQADAVGVPESTHRRRLGDRSSLHVK 174
                     899*******************************999999999999999999988888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.49
# Mc/sec: 3716.51
//
Query:       KKY20837.1  [L=447]
Description: putative het domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-12   45.5  10.8    2.8e-10   40.7   4.2    2.3  2  HET       Heterokaryon incompatibility protein (HET)


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   4.2   1.6e-14   2.8e-10       1      85 [.      42     132 ..      42     150 .. 0.84
   2 !    9.0   0.6   9.5e-05       1.7     130     146 .]     146     162 ..     136     162 .. 0.80

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.6e-14
         HET   1 YeaLSYvWgdsk......ekeeievngklleltenledalqvlrklgerylWiDaiCInQdddkekskqvqlmadIYsnAelvivalgses 85 
                 Y+ LS+ W +++      +  +++  ++++   e ++ a+++++k++  ++WiD+ CIn+d+++e ++ +++m + Y++A++++++l + +
  KKY20837.1  42 YAILSHRWYEQEitfedlNAAQLKDVREQSPQLEKIRGACSQAKKDKLDWIWIDSCCINKDSSQELTRSINSMFQWYQKATVCYTYLTDVE 132
                 999*****999976765544444444488999999*************************************************9998755 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 9.5e-05
         HET 130 eellespwfkRvWvlQE 146
                 +    s+wf+R+W+lQE
  KKY20837.1 146 KGRKYSEWFERGWTLQE 162
                 4556799*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3569.04
//
Query:       KKY20838.1  [L=225]
Description: putative stress response protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      110  (0.00613531); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1436.93
//
Query:       KKY20839.1  [L=231]
Description: putative cwf15 cwc15 cell cycle control family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-84  282.0  15.7    5.4e-84  281.8  15.7    1.1  1  Cwf_Cwc_15   Cwf15/Cwc15 cell cycle control protein
  ------ inclusion threshold ------
       0.11   11.9  17.5       0.14   11.6  17.5    1.1  1  SDA1         SDA1
       0.66    9.6  12.3        1.3    8.7  12.3    1.4  1  Casc1_N      Cancer susceptibility candidate 1 N-terminus
        1.6    7.0   6.2        1.9    6.8   6.2    1.2  1  Menin        Menin
        2.1    8.1   5.7        3.4    7.4   5.7    1.4  1  MAJIN        Membrane-anchored junction protein
        6.7    5.4   9.8        7.7    5.2   9.8    1.0  1  SAPS         SIT4 phosphatase-associated protein
        8.1    4.6  14.2        8.8    4.5  14.2    1.1  1  CDC45        CDC45-like protein
        9.8    4.8   9.3         13    4.4   9.3    1.1  1  Presenilin   Presenilin


Domain annotation for each model (and alignments):
>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.8  15.7   2.4e-87   5.4e-84       1     247 []       1     231 []       1     231 [] 0.91

  Alignments for each domain:
  == domain 1  score: 281.8 bits;  conditional E-value: 2.4e-87
                 XXXXXXXXXXXXXXX.XXXXXXXX--STTS----------TTT--HHHHHHS-HHHHHHHHHHHHHHHHH-----------.......----------- CS
  Cwf_Cwc_15   1 MttAhRPtfdpakGkealrgpskqyssrdlpahtkLKfRqegqgteeelekrdlraeLeeaeaeakakkrkkaeleaeeee.......ekekkeeeeee 92 
                 MttAhRPtfdpa+Gkea+rgp+  y++r  paht LK+Rq+gqg++++   rdlraeL++aea+++ak++++ e+++++ +       e+ +++++++e
  KKY20839.1   1 MTTAHRPTFDPARGKEAQRGPA--YHQRLQPAHTLLKVRQPGQGGDAD-GPRDLRAELLAAEAAHFAKTKGTGEESTANPDtvprrqlEAGSSNDDSNE 96 
                 **********************..*********************776.689****************9885554444444899999877777777888 PP

                 ---------------..---------------------------------------------------------------------------------- CS
  Cwf_Cwc_15  93 eeeeakrrkeelleeareidaddedseeeeeeeeeesdddsdsdsdddddedetaeLlrELekikreraeekerkerekaeeeekereeeiatgNpLln 191
                 e+ +akrr+  +lee+r++dad++                ++sd+++dd+edetaeL+rELekikrerae+k+++e+eka++e+++re +ia gNpLln
  KKY20839.1  97 EDPDAKRRR--ILEETRDLDADSDGGG------------TDSSDEESDDEEDETAELMRELEKIKRERAEQKAKEEAEKAAKEQEQREVDIALGNPLLN 181
                 889999999..************9874............345667778889************************************************ PP

                 ...------------TTTS-SS-S-SSS----STTS--S-TTSSSHHHHHHHHSB. CS
  Cwf_Cwc_15 192 lkskeesedfkvkrrWdddvvFknqargeeekkkkeFvnDllRsdFHkkFlkkyik 247
                        + f+v+rrWdddvvFknqarg+e+k+kkeFvnDllRsdFHk+F++ky++
  KKY20839.1 182 ------PKAFNVQRRWDDDVVFKNQARGTEQKGKKEFVNDLLRSDFHKRFMSKYVR 231
                 ......468**********************************************7 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  17.5   6.1e-05      0.14      89     181 ..      75     197 ..      47     218 .. 0.45

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.1e-05
        SDA1  89 e...............eeeedsddeddeedwevesdddseedseggwidvesdeeeieesdesedeeeee.eeeeekeekeeeeeeeeeeeeeeeeeee 171
                 +               +++++++d d ++   +e+  d + ds+gg           ++sde++d+ee+e  e +++ ek + e++e  ++++ee e++
  KKY20839.1  75 AnpdtvprrqleagssNDDSNEEDPDAKRRRILEETRDLDADSDGG---------GTDSSDEESDDEEDEtAELMRELEKIKRERAE--QKAKEEAEKA 162
                 0445555444333332223333333444444444444445566555.........33333333333323302233333333333332..2222233333 PP

        SDA1 172 eeekekkkk.........................k 181
                  +e+e++++                          
  KKY20839.1 163 AKEQEQREVdialgnpllnpkafnvqrrwdddvvF 197
                 32333333345666667666666666665555541 PP

>> Casc1_N  Cancer susceptibility candidate 1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  12.3   0.00057       1.3       4      55 ..     132     183 ..     127     195 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00057
     Casc1_N   4 reeEeeRlraeeeererleeerrekeereqlaaeqarrkeeleelkplleer 55 
                 +e E + l +e e+ +r+++e+++kee+e++a+eq++r++ ++  +pll+ +
  KKY20839.1 132 EEDETAELMRELEKIKRERAEQKAKEEAEKAAKEQEQREVDIALGNPLLNPK 183
                 3449999**********************99********9998888887755 PP

>> Menin  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   6.2   0.00083       1.9     433     533 ..     103     204 ..      51     225 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00083
       Menin 433 skvviklkedleaeqa.aaaeaaaaeaaededaaseealeGnrrrgprreskkeeksksseqlPttladltaacgekilnpd.fllqgg.dqplaeqkq 528
                 ++ ++    dl+a+ +   ++++ +e+ ++ed+++e ++e ++ + +r e k +e+++++  + ++  ++  a g+ +lnp  f +q   d+ +  ++ 
  KKY20839.1 103 RRRILEETRDLDADSDgGGTDSSDEESDDEEDETAELMRELEKIKRERAEQKAKEEAEKAA-KEQEQREVDIALGNPLLNPKaFNVQRRwDDDVVFKN- 199
                 4444455567999999444666677777777777777788887777788877777666555.445555667999******963666654133333333. PP

       Menin 529 kkage 533
                 ++ g 
  KKY20839.1 200 QARGT 204
                 33333 PP

>> MAJIN  Membrane-anchored junction protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   5.7    0.0015       3.4     125     232 ..      49     156 ..      37     177 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0015
       MAJIN 125 lglvlaekkaaeavlkkrkkveepssPsragldrakletsseaaskkkplketrrnreeksqqekqeteasdatdvqeqdskledslaGklvpplqksn 223
                  +l      a+ a   k k + e+s+ +  +  r +le+ s + ++++   +++r r  +++++ +  ++   td  +++s  e++ + +l+++l+k +
  KKY20839.1  49 RDLRAELLAAEAAHFAKTKGTGEESTANPDTVPRRQLEAGSSNDDSNEEDPDAKRRRILEETRDLDADSDGGGTDSSDEESDDEEDETAELMRELEKIK 147
                 5554444455566677888888888888888899999999888888888888888889999999999999999********999999999999999887 PP

       MAJIN 224 plppkepke 232
                    ++++ +
  KKY20839.1 148 RERAEQKAK 156
                 765555433 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   9.8    0.0035       7.7     225     356 ..      51     221 ..      49     228 .. 0.52

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0035
        SAPS 225 LiaeLLhcsnmallnekk.geeivkerDevrerlleeltseeealedvs...................deaskeesaesedltdkdedvsleesksakd 303
                 L aeLL  +     + k+ gee  ++ D+v  r+le ++s++++ e+                        ++++++es+d +d+++++  e +k +++
  KKY20839.1  51 LRAELLAAEAAHFAKTKGtGEESTANPDTVPRRQLEAGSSNDDSNEEDPdakrrrileetrdldadsdGGGTDSSDEESDDEEDETAELMRELEKIKRE 149
                 667888777777766654377888888888777777775554444444424444444444444444432233333344444444444444444444444 PP

        SAPS 304 enkesdesesdtaeesseededdasseesalaeeteeklr...................kkpvvGDlLKikl 356
                  +++++++e+++a +++e+ e d++  +++l+ +  +  r                   kk  v DlL+  +
  KKY20839.1 150 RAEQKAKEEAEKAAKEQEQREVDIALGNPLLNPKAFNVQRrwdddvvfknqargteqkgKKEFVNDLLRSDF 221
                 555555555555666666666666655555333222222245556666666666666666666666666555 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  14.2    0.0039       8.8     109     210 ..      93     167 ..      50     222 .. 0.49

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0039
       CDC45 109 Dgdieeeleeereayealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee..sddddersrkrrrsepsakklrrql 205
                 D + ee+ +++r  + + +++ ++d++   ++                            +++++++dee+e  +  ++ ++ kr+r e++ak+  ++ 
  KKY20839.1  93 DSN-EEDPDAKRRRILEETRDLDADSDGGGTD----------------------------SSDEESDDEEDEtaELMRELEKIKRERAEQKAKEEAEKA 162
                 211.2222222222222222222222211111............................111111111111121111122222222221111111111 PP

       CDC45 206 kkerr 210
                  ke++
  KKY20839.1 163 AKEQE 167
                 11111 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   9.3    0.0057        13     243     327 ..      83     176 ..      52     180 .. 0.37

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0057
  Presenilin 243 kkkeeasesskeeeseeesseksaqsse...................seeeseeesseaessaeesseekeseessesseeeeeeeeeeeeseseergv 322
                 ++ e+ s++++++e++       a++++                   s    +ees ++e++++e   ++ ++ ++e++e++ +ee e+ ++e+e+r v
  KKY20839.1  83 RQLEAGSSNDDSNEED-----PDAKRRRileetrdldadsdgggtdsS----DEESDDEEDETAEL-MRELEKIKRERAEQKAKEEAEKAAKEQEQREV 171
                 1111111111111111.....111111133344556666666532222....22222222222222.22222223333333334444444455566667 PP

  Presenilin 323 kLGLG 327
                  + LG
  KKY20839.1 172 DIALG 176
                 66666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2281  (0.127224); expected 358.6 (0.02)
Passed bias filter:                      912  (0.0508673); expected 358.6 (0.02)
Passed Vit filter:                       153  (0.00853366); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 1864.40
//
Query:       KKY20840.1  [L=1274]
Description: putative 90s preribosome component rrp12 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-75  251.9   0.1    2.3e-70  236.4   0.0    3.3  4  NUC173       NUC173 domain
     0.0028   17.7   4.4         19    5.8   0.0    4.8  4  HEAT         HEAT repeat
  ------ inclusion threshold ------
      0.099   12.3   0.8         20    4.8   0.0    3.8  4  DUF4042      Domain of unknown function (DUF4042)
       0.17   12.5   6.5         37    5.0   0.0    5.7  6  HEAT_EZ      HEAT-like repeat
       0.81    8.7   9.2        2.4    7.2   3.0    3.6  4  MMS19_C      RNAPII transcription regulator C-terminal


Domain annotation for each model (and alignments):
>> NUC173  NUC173 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         2   7.3e+03     100     122 ..      45      71 ..      22      79 .. 0.51
   2 ?   -3.1   0.0       1.4   5.1e+03      21      56 ..     260     296 ..     245     299 .. 0.81
   3 !  236.4   0.0   6.4e-74   2.3e-70       7     204 .]     384     580 ..     380     580 .. 0.98
   4 !   11.5   0.0   4.8e-05      0.17       2      83 ..     904     987 ..     903    1003 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2
      NUC173 100 W..LLPlLrdnvrn..aeLafFveell 122
                 +  LL lLr+++++  aeLa  v +ll
  KKY20840.1  45 FaaLLALLRQALSSgnAELAQSVIYLL 71 
                 233777777776653355555444444 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.4
      NUC173  21 vlevlsalfeklgkrs.spllkkilktlgelreseef 56 
                  +ev++++fe l +++ s  l ++l  + el+ s+++
  KKY20840.1 260 AFEVFEVIFEGLMDEVsSSKLPRLLDAIMELQPSNND 296
                 6899999999997777566799999999999887754 PP

  == domain 3  score: 236.4 bits;  conditional E-value: 6.4e-74
      NUC173   7 eslLslkyqaawkevlevlsalfeklgkrsspllkkilktlgelreseefelkkeadevigaairamGpevvLevlPLnleeeeeeklsegraWLLPlL 105
                 + lLs+kyq aw+ev+++l+al+ +l++r +p+l +i+k +gelr +e+f+ kkeadev+g+ai+++Gpe+vL+vlP nl+ +  +++++graWLLPlL
  KKY20840.1 384 TGLLSVKYQGAWMEVFKTLAALLGALRWRGDPYLIDIVKAIGELRGNESFHGKKEADEVLGQAIQSLGPEAVLKVLPHNLTTP--KAGQPGRAWLLPLL 480
                 4689*****************************************************************************65..358*********** PP

      NUC173 106 rdnvrnaeLafFveellplaealeqkakeaeeakksveakiletlveqiWslLPsfcelptDlkesf.kklaklLsnaLyeqpeLrltickaLrkLves 203
                 rd+v+n++L++F++ l+ l+ea+++++ ++ +a+k++e ki+et++ q+W+++P++c+lp Dl++++ +k+a++ sn+Ly+q +Lr + c++L++Lves
  KKY20840.1 481 RDHVTNTKLSHFKTDLVALSEAMYHRILQHGSAEKTMETKIFETIIAQVWAIFPGYCDLPLDLTSALdQKFAEMVSNLLYQQANLRHDLCRGLQNLVES 579
                 **************************************************************************************************9 PP

      NUC173 204 n 204
                 n
  KKY20840.1 580 N 580
                 8 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 4.8e-05
      NUC173   2 llkaleslLslkyqaawkevlevlsalfeklgkrs..spllkkilktlgelreseefelkkeadevigaairamGpevvLevlP 83 
                 l++++e +L+ + ++ ++ vl ++++++ ++      +p + +++ +++ + ++++  l++++++++  a+r  G+  v +++P
  KKY20840.1 904 LIATMEIFLESNNREIVRAVLGCVKVFVVVCPADEvlRPRMPELMPRIARWGKEHNGRLRSKVKSIVERAVRKFGAADVEAWVP 987
                 6789999999999******************666667999***************99*******************99988888 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       1.2   4.4e+03       4      30 ..      51      77 ..      48      98 .. 0.58
   2 !    5.8   0.0    0.0054        19       2      28 ..     140     166 ..     139     168 .. 0.85
   3 ?    4.5   0.0     0.014        52       2      30 ..     330     358 ..     329     359 .. 0.86
   4 !    5.5   0.0    0.0067        24       5      30 ..     802     827 ..     798     828 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.2
                HHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT  4 lllkllsDpspeVReaAakaLgalaev 30
                ll ++ls+ ++e  +++++ L  ++++
  KKY20840.1 51 LLRQALSSGNAELAQSVIYLLDLISSH 77
                556666666666666655555555444 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0054
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 + +ll l +Dp p++R+ +  a+ +++
  KKY20840.1 140 VGVLLALAMDPRPKIRKRSQDAISNVL 166
                 66899999*********9999998876 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.014
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalaev 30 
                 ++ + k l++ s ++R +A ++L  +  +
  KKY20840.1 330 FDQIAKFLTSASHNIRISASECLISFFAN 358
                 6789999****************988665 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.0067
                 HHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   5 llkllsDpspeVReaAakaLgalaev 30 
                 ++ +++Dp+ + R+a +  L++la+ 
  KKY20840.1 802 VVLACKDPNEKARQAGFTVLVDLAKR 827
                 55569******************985 PP

>> DUF4042  Domain of unknown function (DUF4042)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.037   1.3e+02      31      70 ..     130     168 ..     127     171 .. 0.80
   2 ?   -3.8   0.1       2.4   8.7e+03     114     142 ..     629     657 ..     618     680 .. 0.52
   3 ?   -0.0   0.0      0.17   6.1e+02      46      67 ..     803     824 ..     786     832 .. 0.84
   4 ?    4.8   0.0    0.0055        20     125     174 ..     884     932 ..     854     938 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.037
     DUF4042  31 pdevlqerkseatLltillkDpspkvRaaalqvlaalLdg 70 
                 p++ +++  + + +l  l+ Dp pk+R  +  +++++L+ 
  KKY20840.1 130 PQS-QTGPRQLVGVLLALAMDPRPKIRKRSQDAISNVLKS 168
                 555.455566677889999****************99975 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.4
     DUF4042 114 tslqvltqllkcLavlvsatPyerLkkgl 142
                 t +q  + +l+c+   +s tP + L++ +
  KKY20840.1 629 TLPQHRAYILQCINSYLSITPAKELEETF 657
                 44444445555555555555555555433 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.17
     DUF4042  46 tillkDpspkvRaaalqvlaal 67 
                  ++ kDp+ k+R+a+  vl +l
  KKY20840.1 803 VLACKDPNEKARQAGFTVLVDL 824
                 46789*********99998766 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.0055
     DUF4042 125 cLavlvsatPyerLkkglltevvksvkkllkekdsnvkvsallvlgalvs 174
                  L+ lv     erL++ +lte++  ++  l++++ ++  ++l +++++v 
  KKY20840.1 884 ALSRLVFEF-QERLQPAFLTELIATMEIFLESNNREIVRAVLGCVKVFVV 932
                 555555443.38********************************999885 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.7   5.9e+03      28      47 ..      47      66 ..      44      71 .. 0.63
   2 ?    0.9   0.0       0.2     7e+02      19      42 ..      80     103 ..      74     118 .. 0.75
   3 ?    5.0   0.0      0.01        37      26      51 ..     136     161 ..     129     165 .. 0.81
   4 ?   -1.9   0.0       1.4   5.1e+03      26      52 ..     326     352 ..     313     354 .. 0.82
   5 ?    4.0   0.0      0.02        72       6      48 ..     880     923 ..     876     928 .. 0.83
   6 ?    0.4   0.0      0.28     1e+03       3      33 ..     916     951 ..     914     953 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.7
     HEAT_EZ 28 eilpaLlalLnddsdeVRaa 47
                ++l++L ++L++ ++e  + 
  KKY20840.1 47 ALLALLRQALSSGNAELAQS 66
                56777777777777766555 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.2
     HEAT_EZ  19 pellqplvpeilpaLlalLnddsd 42 
                 ++ll+ + ++il + ++ L++++ 
  KKY20840.1  80 APLLRSQFSQILSQIAPILTSEDT 103
                 5789999************99776 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.01
     HEAT_EZ  26 vpeilpaLlalLnddsdeVRaaAaga 51 
                   +++  Llal +d+ +++R+ +  a
  KKY20840.1 136 PRQLVGVLLALAMDPRPKIRKRSQDA 161
                 5799***************9876555 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.4
     HEAT_EZ  26 vpeilpaLlalLnddsdeVRaaAagaL 52 
                 +p++ ++ +++L++ s ++R  A  +L
  KKY20840.1 326 LPQLFDQIAKFLTSASHNIRISASECL 352
                 578888888888888889999998877 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.02
     HEAT_EZ   6 aAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaA 48 
                 a a aL+rl ++  e lqp +++e+++ +  +L++ + e+  a+
  KKY20840.1 880 ASATALSRLVFEFQERLQPaFLTELIATMEIFLESNNREIVRAV 923
                 6677****999999999999999999999999988888775555 PP

  == domain 6  score: 0.4 bits;  conditional E-value: 0.28
     HEAT_EZ   3 vRraAawaLGr.....laggepellqplvpeilpaL 33 
                 +R+ + ++LG+     +   ++e l+p  pe++p  
  KKY20840.1 916 NREIVRAVLGCvkvfvVVCPADEVLRPRMPELMPRI 951
                 677777788999997744467777*********976 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   3.0   0.00066       2.4     330     403 ..      45     120 ..      43     131 .. 0.91
   2 ?   -0.8   0.0      0.18   6.3e+02     185     284 ..     321     424 ..     260     441 .. 0.68
   3 ?   -1.0   0.5       0.2   7.2e+02      56     154 ..     556     671 ..     516     767 .. 0.56
   4 ?    1.8   0.0     0.028     1e+02     337     419 ..     866     950 ..     858     951 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00066
     MMS19_C 330 FstvlpklvegfkssdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdae..vkastLetlksile 403
                 F  +l +l ++ +s + e  + + + L ++ +hvP  ll ++ +++l+ +   L+ +d++  + +s++ +l+s+l 
  KKY20840.1  45 FAALLALLRQALSSGNAELAQSVIYLLDLISSHVPAPLLRSQFSQILSQIAPILTSEDTTaaLLKSSIGVLESLLL 120
                 8888999999999999999999***********************************9998899*******99997 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.18
     MMS19_C 185 vklpdlsellnellellaseaespflrlaylr.llallvNKflkdedlselldellesieeslie.......aedsqerkaaleiliwitKALvlRghp 275
                  ++ +l +l++++ +  +++  s+  r+++++ l++ + N  + d+ + e  +  +e+i ++l          + +   ++ +++l+ ++ AL  Rg+p
  KKY20840.1 321 ETFAKLPQLFDQIAK-FLTS-ASHNIRISASEcLISFFANCIP-DSVIVEP-SIYDEKILAQLGIkatgllsVKYQGAWMEVFKTLAALLGALRWRGDP 415
                 444566666666666.3333.3444555555514445555444.5444443.34555555554444678888888888899999999999999999999 PP

     MMS19_C 276 latelldkL 284
                 + +++++  
  KKY20840.1 416 YLIDIVKAI 424
                 999988765 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.2
     MMS19_C  56 s.....saayahailstllkllekkq..................tdlekeellnsyydrivprlltlvvsaastsssiltddrllevlgriinlivrsl 131
                 s     +a+  h +++ l++l+e +q                  ++  + ++  +y   +  +ll+++++  s+    l ++r+  ++ + in      
  KKY20840.1 556 SnllyqQANLRHDLCRGLQNLVESNQavleaevddedlvamrrtSKA-QAQENLEYLAGFTSNLLAVLFNVYSQ---TLPQHRA--YILQCINSYLSIT 648
                 34555556667788888888888877777766666666666663222.33333344555555555555555543...2222222..2233333333334 PP

     MMS19_C 132 ssskqqevleevvalfltgdask 154
                 ++++ +e +++v ++  +++ s+
  KKY20840.1 649 PAKELEETFDRVATMVESSTVSE 671
                 44444555555555555554444 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.028
     MMS19_C 337 lvegfkssdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevkastLetlksile..espslvsehlssLvpr 419
                  ++g   s+++  ++  +ALs l+    + l   +L++L+ ++   L+ +++e+ +++L ++k+ +    +++++ + + +L pr
  KKY20840.1 866 TSAGLAGSTPHMVAASATALSRLVFEFQERLQPAFLTELIATMEIFLESNNREIVRAVLGCVKVFVVvcPADEVLRPRMPELMPR 950
                 555555678888888999********************************************99887777788888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1062  (0.0592336); expected 358.6 (0.02)
Passed bias filter:                      677  (0.0377601); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.47
# Mc/sec: 8066.17
//
Query:       KKY20841.1  [L=532]
Description: putative c6 finger domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0011   19.1   6.5     0.0011   19.1   6.5    3.2  3  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   6.5   5.9e-08    0.0011       3      34 ..     250     285 ..     249     289 .. 0.90
   2 ?   -2.9   0.9      0.43   7.7e+03       3      11 ..     391     399 ..     388     406 .. 0.76
   3 ?   -0.2   1.7     0.064   1.1e+03      16      27 ..     442     453 ..     438     465 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 5.9e-08
                 -HHHHHCT---ST.....SSSS-HHHHHCTHHHCCCC CS
     Zn_clus   3 CdnCrkkKvKCda.....kkPaCsnCkklnleCtfys 34 
                 Cd Cr +K  C+      + P C++C+ ++ eCtf s
  KKY20841.1 250 CDFCRIGKKTCSLkrfsdEGP-CKQCVNRGIECTFVS 285
                 ************988887778.************876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.43
                 -HHHHHCT- CS
     Zn_clus   3 CdnCrkkKv 11 
                 C+ C+  +v
  KKY20841.1 391 CTACSLERV 399
                 888877665 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.064
                 SSSS-HHHHHCT CS
     Zn_clus  16 kkPaCsnCkkln 27 
                 + P+Cs C++  
  KKY20841.1 442 NVPSCSLCISPA 453
                 6799****9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 3235.99
//
Query:       KKY20842.1  [L=450]
Description: putative fructose-bisphosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-66  222.3   5.5    1.1e-64  217.9   5.5    2.1  1  6PF2K       6-phosphofructo-2-kinase
    9.6e-38  129.8   0.0    4.1e-37  127.8   0.0    1.9  2  His_Phos_1  Histidine phosphatase superfamily (branch 1)
    0.00028   21.0   0.8     0.0033   17.6   0.8    2.3  1  AAA_33      AAA domain
     0.0025   17.3   0.2     0.0076   15.7   0.2    1.8  1  KTI12       Chromatin associated protein KTI12


Domain annotation for each model (and alignments):
>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.9   5.5   2.4e-68   1.1e-64      13     223 .]       2     226 ..       1     226 [. 0.91

  Alignments for each domain:
  == domain 1  score: 217.9 bits;  conditional E-value: 2.4e-68
                 -EEEEEESSTTSSHHHHHHH................HHHHHHHTT--EEEEEHHHHHHHHHSS---GGGGSTT-HHHHHHHHHHHHHHHHHHHHHHHTS CS
       6PF2K  13 klvivlvGLpargKtyiskk................ltrylkwlgvrtkvFnvgkyrreaskalsdaeffrpdneealklreklalaalkdllaylnee 95 
                 +l++v+vGLpargK++i+ k                + ryl+w+++++ vFnvg yrr+ +++  da+ff+ +n+ + ++r+ +a+aa++d+l +++  
  KKY20842.1   2 RLCVVMVGLPARGKSLIAGKgtrskvvgrhwklisvVKRYLRWISIDAEVFNVGSYRRKSNEK-PDASFFDVKNKAGETARRAAATAAVEDMLLWFKLR 99 
                 799**************8653333333333332222347888****************97655.89********************************* PP

                 --SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHHHTTTSGGGTTS-HHHHHHHHHHHHHHHHTT-----TTTTTTSEEEEEET CS
       6PF2K  96 egqvaifDAtNttrerRklilefveennlkvlflesicsdeeiikeNikevklsspDYkdketeeaikdflkRlenyekqyeplddeedeelsyIkvid 194
                 +g vai DAtN+t+erRk+i ++++  n+ vlf+es c+de++i +Ni+evk++spDY+++++e+a  df +R++nyek+ye++d e++++  y+k+++
  KKY20842.1 100 KGTVAILDATNSTKERRKWIYDVLTASNVDVLFVESRCDDESLIMANIMEVKTTSPDYEGQDPETAARDFRNRIANYEKVYESID-ESEKHYAYVKLVN 197
                 *************************************************************************************.8899********* PP

                 TTTEEEEE---SHHHHHHHHHHTT---S- CS
       6PF2K 195 vgkslvvnnvqgylqsrivyyllNihlkp 223
                 vg+++++n +++yl sr vyyl  +h kp
  KKY20842.1 198 VGHNVIINLIKDYLSSRLVYYLTVLHIKP 226
                 **********************9888776 PP

>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.28   1.3e+03     123     157 ..     176     210 ..     146     218 .. 0.62
   2 !  127.8   0.0   9.2e-41   4.1e-37       1     187 [.     229     415 ..     229     422 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHH CS
  His_Phos_1 123 aaRvaaaleelaarhegetvlvVsHggvirallar 157
                 +++v + ++e +++++  +++ V H  +i+++  +
  KKY20842.1 176 YEKVYESIDESEKHYAYVKLVNVGHNVIINLIKDY 210
                 34444555566666666668888888888877665 PP

  == domain 2  score: 127.8 bits;  conditional E-value: 9.2e-41
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTTS---EE.....EE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.HHHH CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlagepidai.....ysSplkRarqTaeliaealglpveldegLrEidfGdweglttaeia 94 
                 ++L RHGe+ +n eg+l+g  d++++ +G++ A+al + +++ ++ a      ++S+lkR++qT e++  +++ +  ++++L+E+d G+++g+t+aei+
  KKY20842.1 229 IWLSRHGESMYNLEGKLGG--DADISTRGQAYAKALPDLIRKSGVPAGtkltvWTSTLKRTIQTSEHVVSEMKFDRLEWKALDELDSGVCDGMTYAEIE 325
                 89************97777..56679****************77776666889********************************************** PP

                 HH..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGGGGGB---TT-EEEEEE-SS-EE CS
  His_Phos_1  95 eeypeeleawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllglpleelrrleldnaslsvlefdeggwr 187
                 eeype+++a+++d++++r+ ggEs++dv+ R+++++ el+++++   vl+++H++vir+++a++++l+ ++ + +e++ ++l +l+ ++ g  
  KKY20842.1 326 EEYPEDFAARDEDKYNYRYRGGESYRDVVIRLEPIIMELERSEN---VLIITHQAVIRCIYAYFMDLKQSDSPWMEVPLHTLMKLTPRAYGTD 415
                 ***************************************99986...***********************************99998877665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.8   7.3e-07    0.0033       2     110 ..       5     141 ..       4     148 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 7.3e-07
      AAA_33   2 vllvGlpGsGKstlaerllkklg.............avl.lssdtlrrrlfgtdqqskt.................dytrvldrlyqilnelarkalsa 69 
                 v++vGlp+ GKs  a +  +                + + +s d++ +++    ++s +                 +++ ++  + ++l   +  +l++
  KKY20842.1   5 VVMVGLPARGKSLIAGKGTRSKVvgrhwklisvvkrYLRwISIDAEVFNVGSYRRKSNEkpdasffdvknkagetaRRAAATAAVEDML---LWFKLRK 100
                 78999999999999988755444556644444444433335555544444443333333333345555555442212233333333333...4457899 PP

      AAA_33  70 grnvildatnlsrrerarflklarrlgvpvrivvvetdeet 110
                 g  +ildatn ++++r+++  ++   +v v+ v  ++d+e 
  KKY20842.1 101 GTVAILDATNSTKERRKWIYDVLTASNVDVLFVESRCDDES 141
                 999**************************999999999875 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   1.7e-06    0.0076       4     120 ..       5     152 ..       1     190 [. 0.75

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.7e-06
                 EEEE--TTSSHHHHHHH.HHHHHHH.......................TT--EEEE-THHHH.........TTSSS--GGGHHHHHHHHHHHHHH.... CS
       KTI12   4 vvltGlPssGKstrake.Lakalee.......................ekrsvvviddeslg........iekdsykdsakekalRsslrsavkr.... 66 
                 vv+ GlP+ GKs +a +  ++++                         +          s++         +  ++k++a e a R++  +av+     
  KKY20842.1   5 VVMVGLPARGKSLIAGKgTRSKVVGrhwklisvvkrylrwisidaevfN--------VGSYRrksnekpdASFFDVKNKAGETARRAAATAAVEDmllw 95 
                 8999****99999986525556665889999999977777444332222........333334433333356666999****************84444 PP

                 .HHTT.SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHH..HHTT CS
       KTI12  67 .dLskekvVIvDslnyikgfRYeLyciakaakttlcvvyvvapldvlvkwn..eere 120
                  +L k +v I+D++n +k  R  +y +  a++  +  v   ++ + l+  n  e ++
  KKY20842.1  96 fKLRKGTVAILDATNSTKERRKWIYDVLTASNVDVLFVESRCDDESLIMANimEVKT 152
                 4679**********************************9999988888887443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.56
# Mc/sec: 2409.49
//
Query:       KKY20843.1  [L=236]
Description: putative urease accessory protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-33  114.8   0.0    3.8e-33  114.5   0.0    1.1  1  cobW      CobW/HypB/UreG, nucleotide-binding domain
    7.3e-06   25.1   0.0      0.003   16.6   0.0    2.0  2  MeaB      Methylmalonyl Co-A mutase-associated GTPase MeaB
     0.0031   18.0   0.0     0.0041   17.6   0.0    1.2  1  AAA_23    AAA domain
  ------ inclusion threshold ------
      0.016   15.3   0.0      0.036   14.2   0.0    1.6  1  MMR_HSR1  50S ribosome-binding GTPase
      0.038   13.9   0.0       0.11   12.4   0.0    1.8  2  NACHT     NACHT domain
      0.072   13.1   0.0       0.12   12.4   0.0    1.4  1  CbiA      CobQ/CobB/MinD/ParA nucleotide binding domain
       0.11   12.4   0.0       0.22   11.5   0.0    1.5  1  AAA_5     AAA domain (dynein-related subfamily)
       0.12   12.6   0.0        2.1    8.6   0.0    2.2  2  AAA_22    AAA domain
       0.19   11.7   0.0       0.24   11.4   0.0    1.3  1  ResIII    Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.5   0.0   1.9e-36   3.8e-33       3     174 ..      13     180 ..      11     183 .. 0.93

  Alignments for each domain:
  == domain 1  score: 114.5 bits;  conditional E-value: 1.9e-36
                 EEEEESTTCCHHHHHHHHH.CT--SS-EEEEESS-SSCHCCCCCCHCCCT.....EEEETTTTECCH.CTT-HHHHHHHHHHHH..TT-SEEEEEECT. CS
        cobW   3 tvltGflGsGKTtLlnhll.enraglklavivNefgevsiDaellretgve....ivelenGciCct.lredllkelealeere..erldviliEttG. 92 
                 ++++G++GsGKT+L+ +l+ + r+++++a ++N++  + +Dae+l+++++     i  +e+G+++++ +red++++l al++++   + d++liE++G 
  KKY20843.1  13 VGIGGPVGSGKTALMLALClALRDEYNIAAVTNDIF-TREDAEFLTRNNALpperISAIETGGCPHAaVREDISANLLALQTLHqkFQTDILLIESGGd 110
                 789***************999***************.********9997667888***********************99998855678*********7 PP

                 TTTHHHHHTTSHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC...HHHHHHHHHHHHTTS- CS
        cobW  93 laePapvafteeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldee.allekleerlrqlnpeak 174
                 +++++ +         +  +d++++v+D+    a ++k ++k++ +++ +dllv+nK+Dl++++ a+l+++e+++ +++++ +
  KKY20843.1 111 NLAANYS---------RELADFIIYVIDV----AGGDKVPRKGGPGITGSDLLVVNKCDLAEAVgADLNVMERDAGRMREGGP 180
                 7777777.........99***********....99*****************************************9998765 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0016       3.1      28      58 ..       9      39 ..       4      46 .. 0.86
   2 !   16.6   0.0   1.5e-06     0.003     111     236 ..      89     210 ..      74     229 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0016
                -SEEEEEEE-TTSSHHHHHHHHHHHHHCTT- CS
        MeaB 28 raqvvGltGvPGaGkstlvealglelrrrGk 58
                ra  vG+ G  G+Gk  l+ al l lr++ +
  KKY20843.1  9 RAFTVGIGGPVGSGKTALMLALCLALRDEYN 39
                8999**********************98755 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.5e-06
                 HHHHHHHHHTT-SEEEEEEESSTTHHHHHHTT-SEEEEEEESSTTTTTTT--CCCHHH-SEEEEE---HHHHHHHHHHHHHHHHHCSTTBTTB--EEEE CS
        MeaB 111 revvllleaaGfDvvlietvGvGqsevdvaevvdtfvvlllpeaGDelqgikkGileiaDiivvnkaDkkeaekaarelraaleleeekekeWrpkvlk 209
                 +++ +l + +  D++lie  G   +     e++d ++ ++  ++GD++       +  +D++vvnk D++ea  a   l+++ e +  + +e  p v  
  KKY20843.1  89 LALQTLHQKFQTDILLIESGGDNLAANYSRELADFIIYVIDVAGGDKVPRKGGPGITGSDLLVVNKCDLAEAVGAD--LNVM-ERDAGRMREGGPTVFA 184
                 555667777888999999999999999999*****************976554456679*********98886654..5544.4455555566677776 PP

                 EBCCCTBSHHHHHHHHHHHHHHHHHTT CS
        MeaB 210 tsavegeGidelvdaieehrevlkktG 236
                 t  ++g+G++++++ i + +++  +  
  KKY20843.1 185 T-IKKGNGVEHICNLILSAWKASGAYE 210
                 5.5789999999999988776655443 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.1e-06    0.0041      23      52 ..      14      43 ..      12     106 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.1e-06
      AAA_23 23 lItGpNGaGKTTildAiklaLygetprlsr 52
                 I Gp G+GKT+++ A++laL  e +    
  KKY20843.1 14 GIGGPVGSGKTALMLALCLALRDEYNIAAV 43
                599******************888765544 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.8e-05     0.036       2      86 ..      13     131 ..      12     158 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.8e-05
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSE.EEEEEE.......ETTEEEEEEECGGC......................SSHHHHHHH..... CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdi.negrvk.......lkgkeielvDtpGl......................iegaseekg..... 65 
                 v+i G   +GK+ L+ al+ +     +++ +T di +++  +       l  ++i  + t G                       +       +     
  KKY20843.1  13 VGIGGPVGSGKTALMLALCLALRDEYNIAAVTNDIfTREDAEfltrnnaLPPERISAIETGGCphaavredisanllalqtlhqkF-------Qtdill 104
                 8999***************8766667777777777433333343333443346699999999733444444333333333333220.......033333 PP

                 .......HHHHHHHHHC.TSEEEEEEETT CS
    MMR_HSR1  66 .......lgkaflalee.adlillvvdas 86 
                        l+ ++ +  e ad i++v+d++
  KKY20843.1 105 iesggdnLAANYSR--ElADFIIYVIDVA 131
                 33322225555553..3478888888865 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.5e-05      0.11       3      51 ..      13      61 ..      12     124 .. 0.71
   2 ?   -1.7   0.0       1.2   2.4e+03      46      69 ..     187     210 ..     182     218 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.5e-05
                EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-.. CS
       NACHT  3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna 51
                v + G+ GsGKT+L+  l+la+++++  +     +F  + +e+ +++na
  KKY20843.1 13 VGIGGPVGSGKTALMLALCLALRDEYNIAAVTNDIFTREDAEFLTRNNA 61
                56889*****************999877765677777777777777776 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.2
                 TTS-...-HCHHHCCCCTS--SSS CS
       NACHT  46 srsgnarsladllfsqlpepaapv 69 
                 ++ + + ++++l+ s +++++a  
  KKY20843.1 187 KKGNGVEHICNLILSAWKASGAYE 210
                 555555789999999999987755 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     6e-05      0.12       9     112 ..      20     124 ..      14     166 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6e-05
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH.............CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-TTCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep.............dlkrllellealgkkkalllkiagvvlnrvdgeneetllk 94 
                 G+GKT l ++L+ al + ++++++v  D  +  +a  + ++n+  p                      +a+++  + +l+ +  +  +++ +  + l++
  KKY20843.1  20 GSGKTALMLALCLALRD-EYNIAAVTNDIFTREDA-EFLTRNNALPperisaietggcpH--------AAVREDISANLLALQTLHQKFQTD--ILLIE 106
                 9****************.*******9999887777.555555544456666333333330........444444444444444444444444..44444 PP

                 HHHHHHHHHCTS-EEEEE CS
                 xxxxxxxxxxxxxxxxxx RF
        CbiA  95 ealeelkqrygvpvlgvi 112
                 ++ ++l + y +++ ++i
  KKY20843.1 107 SGGDNLAANYSRELADFI 124
                 444444444444444444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00011      0.22       6      36 ..      17      47 ..      13     132 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
                --SSSSHHHHHHHGGGGBS--EEEEE--TT- CS
       AAA_5  6 GppGtgKselaerlaaalnreveyvqltrdt 36
                Gp G+gK+ l+  l+ al++e+++ + t d+
  KKY20843.1 17 GPVGSGKTALMLALCLALRDEYNIAAVTNDI 47
                9*****************9999988888775 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0     0.001       2.1      12      38 ..      17      51 ..       8     120 .. 0.77
   2 ?    2.0   0.0      0.12   2.4e+02      38      70 ..     177     209 ..     157     224 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.001
      AAA_22 12 GesGtGKTtllrrlleqldeeakaee........e 38
                G++G+GKT l+  l   l  e++++         e
  KKY20843.1 17 GPVGSGKTALMLALCLALRDEYNIAAvtndiftrE 51
                9**********999888866655555555555541 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.12
      AAA_22  38 erpevvfvtlpsstsskdllrellralglelka 70 
                 e+ ++vf t++++++ + +++ +l+a++ ++ +
  KKY20843.1 177 EGGPTVFATIKKGNGVEHICNLILSAWKASGAY 209
                 677899*********************998877 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012      0.24      27      54 ..      13      40 ..       4     127 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                EEEEESTTSTHHHHHHHHHHHH-S.... CS
      ResIII 27 glikmaTGtGKTlvaaklierllkkgke 54
                + i  + G+GKT ++++l+ +l+ ++++
  KKY20843.1 13 VGIGGPVGSGKTALMLALCLALRDEYNI 40
                5577799***************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 1467.89
//
Query:       KKY20844.1  [L=475]
Description: putative alpha-mannosyltransferase cmt1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-67  226.7   0.0    4.2e-67  226.3   0.0    1.1  1  CAP59_mtransfer  Cryptococcal mannosyltransferase 1


Domain annotation for each model (and alignments):
>> CAP59_mtransfer  Cryptococcal mannosyltransferase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.3   0.0   2.3e-71   4.2e-67       1     241 []     157     397 ..     157     397 .. 0.92

  Alignments for each domain:
  == domain 1  score: 226.3 bits;  conditional E-value: 2.3e-71
  CAP59_mtransfer   1 kvfiAanlynneellpewleallelirfLgpenvfvSiyesgskdgtkeaLraleaelealgversivlneeteleldelesgkkelkRIeyLa 94 
                      k+f+A++ly++++llp+++++++e+irfLgpe++ +Si+e++s+dg++e+L+al ae+++lg+e+ +++n+++        + ++ +kRI+ La
       KKY20844.1 157 KYFFALDLYDSAHLLPRLMATIVEIIRFLGPEHCGLSIVEGQSSDGSQEILQALAAEIKELGAEYFLTFNTAA--------QRAEGKKRIHALA 242
                      79*****************************************************************998333........2456889****** PP

  CAP59_mtransfer  95 elRNkaLepLeelakegkekfdkvlFlnDvvftaedileLleq...qngeydaaCalDfskkplkfyDtwvlRdleGkefl.........splw 176
                      ++RN+aL pL e+++ + +  ++++FlnD+++++ dileLl+q   q  +++++Ca+D++  + +f D+wv+R+++G++f+         +   
       KKY20844.1 243 DIRNQALLPLIENKSFQYSPETRIIFLNDIALCPIDILELLHQhiaQ--DMHITCAMDWIDDASHFCDVWVSRTIDGDTFFevpqslsyeNANN 334
                      **********9976555555588********************7544..5**********9999*************************97778 PP

  CAP59_mtransfer 177 pyfkseesreaveagldpvpVksCWnGmvaldaepflaeeklrFRaseesaseleasEcclihaD 241
                       +f+s+ +r+++ea++ p++V+sCWnG+++l+aepf +++++ FRas+e+  e+ ++E++l+++D
       KKY20844.1 335 LFFSSPLARSRFEAKQ-PIQVYSCWNGATILTAEPF-MRNDVAFRASNEASGECFMGEPTLLAKD 397
                      9*************75.*******************.68********99955**********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3080.15
//
Query:       KKY20845.1  [L=414]
Description: putative rna polymerase i specific transcription initiation factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.3   0.4      0.032   14.1   0.4    1.6  1  KilA-N    KilA-N domain


Domain annotation for each model (and alignments):
>> KilA-N  KilA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.4   1.8e-06     0.032      18      59 ..     333     375 ..     322     393 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.8e-06
      KilA-N  18 inatkllkaaaedtkriddWlrnkstkelleeleedynise.k 59 
                 +++ +ll+a  e +++i++Wl++k  +e+ e +++ ++++e  
  KKY20845.1 333 FSIKQLLRAVRETENKISKWLNSKRRTEYWEDIDSRKRTDEtV 375
                 7899******9999*******************9998887433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       855  (0.0476881); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.52
# Mc/sec: 2402.72
//
Query:       KKY20846.1  [L=161]
Description: putative eukaryotic translation initiation factor 5a-2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-28   97.9   1.3    3.5e-28   97.5   1.3    1.2  1  eIF-5a    Eukaryotic elongation factor 5A hypusine, DNA-bindi
     0.0008   19.4   0.9     0.0041   17.1   0.0    2.3  3  EFP_N     Elongation factor P (EF-P) KOW-like domain


Domain annotation for each model (and alignments):
>> eIF-5a  Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   1.3     4e-32   3.5e-28       1      69 []      87     156 ..      87     156 .. 0.97

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 4e-32
                 --EEEEEEEEEE-SS.EEEEEETT--EEE.EEGG..GB-HHHHTT-.-TT-E..EEEEEETTEEEEEEE- CS
      eIF-5a   1 nVkrkeyqLidIqdDgflsLmdddgetkeDlklpegelgkqikekf.eegkdvlVtVlsamGeekiiavK 69 
                 nV+r+eyqL+dI++DgflsLm++dg+tk+D+klp+ge+g++i++ f e++kd +V Vl+amGee ++++K
  KKY20846.1  87 NVTRREYQLLDISEDGFLSLMSEDGSTKDDVKLPDGEVGDKINKLFkEDEKDTNVIVLTAMGEELAMDAK 156
                 79********************************************8888*****************988 PP

>> EFP_N  Elongation factor P (EF-P) KOW-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.3   1.2e+04      46      56 ..       5      15 ..       2      15 .. 0.72
   2 !   17.1   0.0   4.5e-07    0.0041       3      49 ..      27      74 ..      25      80 .. 0.87
   3 ?    0.2   0.0     0.089     8e+02      45      57 ..     125     137 ..     116     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.3
                -EEEEEEETT- CS
       EFP_N 46 akvektfkagd 56
                a  e+tf + d
  KKY20846.1  5 AQHEHTFESAD 15
                55688998876 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 4.5e-07
                GG--TT-EEEETTEEEEEEEEEEEEETT.S--EEEEEEEETTTS-EEE CS
       EFP_N  3 selkkGlvieidgklyvVlefehvkpGk.GqafvrvklknlrtGakve 49
                s l+k+ ++ i+g ++++++   +k Gk G a v +   ++ tG+k+e
  KKY20846.1 27 SALRKNGFVVIKGRPCKIVDMSTSKTGKhGHAKVHIVAIDIFTGKKLE 74
                679**********************99637788888888888888887 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.089
                 S-EEEEEEETT-E CS
       EFP_N  45 Gakvektfkagdk 57 
                 G k++k fk ++k
  KKY20846.1 125 GDKINKLFKEDEK 137
                 899*******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1166.44
//
Query:       KKY20847.1  [L=602]
Description: putative garp complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.6e-116  388.3   1.0   6.6e-116  388.0   1.0    1.0  1  Vps52      Vps52 / Sac2 family
      3e-05   22.6   0.6    4.6e-05   22.0   0.6    1.3  1  Sec3_C     Exocyst complex component Sec3
     0.0017   17.4   0.1      0.003   16.5   0.1    1.3  1  DUF812     Protein of unknown function (DUF812)
  ------ inclusion threshold ------
      0.015   15.4   1.2       0.13   12.4   0.1    2.6  2  Xrn1_D3    Exoribonuclease 1 Domain-3
      0.021   15.1   2.1      0.027   14.8   0.4    2.0  2  THOC7      Tho complex subunit 7
       0.26   11.4   1.3        8.2    6.6   0.0    3.0  2  DASH_Dad3  DASH complex subunit Dad3


Domain annotation for each model (and alignments):
>> Vps52  Vps52 / Sac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  388.0   1.0  2.2e-119  6.6e-116       6     501 ..      74     596 ..      69     601 .. 0.91

  Alignments for each domain:
  == domain 1  score: 388.0 bits;  conditional E-value: 2.2e-119
       Vps52   6 iedyikeseniaslhnqiaaidsvleqledlLeeFqsdlssissdikklqekSnelqlrLenrkaveaklsklvddlivppelidvIiegkvneesiae 104
                    y ke ++ ++ +  ia++d+vl+ +e +L++Fq +l+++s +i+ lq +S e++ +Lenrk ve+ l++ v+++ ++p+ + +I e++v+e  ++ 
  KKY20847.1  74 ASTYHKEQHKYEDFQTSIADCDEVLKSVEIYLTNFQAELGQVSAEIENLQTRSIEMNAKLENRKKVETLLGPAVEEISISPQTVRAIAEAPVDESWLQA 172
                 567889999************************************************************************************987777 PP

       Vps52 105 kleilnkkksaekdqs.vkslkalkDvkklldkLrnkalekireyivqkiktlRkpkvnvqiiqn.kLlkvkkifeFllennrklalelrqaYidTmkk 201
                   e+ ++  + e   +  + +kal Dvk++ld L+ ka+e+ir++ v +ik+lR+p++n qi+q+  +l++k+++ +l  n   l  e+ qaYi+T+ +
  KKY20847.1 173 LKELETRSVAIESKLKsDEPIKALDDVKPMLDDLKAKAIERIRDFTVGQIKALRSPNINAQILQQqTFLRYKQLYAYLAGNHPTLGDEIGQAYINTIRW 271
                 666655555554444337889*******************************************999******************************** PP

       Vps52 202 iyleyfrsYirsLtklqfeeietkddLigvedtak..klffsktaslkkrnkiftigkRlkilkaqldapvlvphiaeknttkyyiEalfrslelalld 298
                 +yl+ f +Y  +L+ lq++++++  dL g + t++     +  +++       f++g+R+++lk     +++ +  a++ +  +y+E+ f++ + al+d
  KKY20847.1 272 YYLHNFTRYHAALQGLQIHNVDQL-DLLGSDSTTSrrANVSANGKTSFAPHDAFNLGRRGDVLK--SAGSAITSYLASETKAPQYMEVPFQNYNSALID 367
                 **********************99.888887776633445557788888999************..45556678888888899**************** PP

       Vps52 299 natsEYlFlkefFavsgdqaeei...feqifektlslatkyleqlisdcyDaigvllsIriinrlqleaerrrvPvldsylnsvlillWPRFqlvldln 394
                 n++ EY    e F  +   ++++    ++ife+ + l +  +++li+++ D++gvl+++r+ +++++e +rr+vPv +sy n+ ++llWPRFq+++dl+
  KKY20847.1 368 NVCHEYSIDSEIFSTKS--FQQVsrkATEIFEPVFALGQSLTKSLIEQSTDCLGVLICVRLNQHFAFELQRRKVPVAESYINGTNMLLWPRFQQIMDLH 464
                 *************9954..444444699*********************************************************************** PP

       Vps52 395 veSlrkadittlve......................kdtrPHeltrryaeflsslvtlsvtvkeee.verllerlqreveslilrlaklfk.kkkeqlv 469
                 +eSl+k++ +   +                        + PH +t+r+++fl  ++ ls +  ++e v ++l rl++e +sl+l+l+k +  ++++ l+
  KKY20847.1 465 CESLKKTATSSSAArnatntalslvgsgstsdlsksSSVAPHLITQRFGQFLHGILALSSEAGDDEpVFNSLIRLRNEFDSLMLKLSKSVGgDQRKRLR 563
                 **********9999999*****************99999************************9999*********************985388999** PP

       Vps52 470 fLinNYdlllgvLkelsldlskeqed.fqekln 501
                 fL n Y l+l++L +++++l+ e ++   e ln
  KKY20847.1 564 FLENQYSLILTILGDVQGKLAEEMKAsLVERLN 596
                 ******************999886641445555 PP

>> Sec3_C  Exocyst complex component Sec3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.6   1.5e-08   4.6e-05      38     182 ..      86     225 ..      79     349 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.5e-08
      Sec3_C  38 didkalkecdelda....lltlysveLstlsedieyIEsqnngLQvksaNqklLykeLeellstvslsesdleaLkeaelssanglealeealeaLfkA 132
                 d ++++++cde+ +     lt ++ eL+++s +ie+  + +  +  k  N+k+    L   ++ +s+s+++ +a+ ea++++   l+al ++le+ + A
  KKY20847.1  86 DFQTSIADCDEVLKsveiYLTNFQAELGQVSAEIENLQTRSIEMNAKLENRKKVETLLGPAVEEISISPQTVRAIAEAPVDESW-LQAL-KELETRSVA 182
                 668899999997552222799**********************************************************98765.3322.334444445 PP

      Sec3_C 133 ltaIdsdlkdlesdlgemravkerrerYekvsssFlrrlveflekkfksa 182
                 + +      +l+sd  +++a+ + + +    + + ++r+ +f   ++k +
  KKY20847.1 183 IES------KLKSDE-PIKALDDVKPMLDDLKAKAIERIRDFTVGQIKAL 225
                 555......777776.7777777777777777777777777777777554 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1     1e-06     0.003     295     397 ..      42     149 ..      23     162 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1e-06
      DUF812 295 ktkgsrfthaeklqftkeela.....kkaeteeelkkkreeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkkktl 388
                 + k  +f++a   +f+k  ++      ++ +   +  k++ + e+ q+ i + ++ ++++e  + ++++++ qv+ e+e++++   e +++++++kk+ 
  KKY20847.1  42 LLKDVKFEDASLEDFAKPDPPsgdvvRSEANAASTYHKEQHKYEDFQTSIADCDEVLKSVEIYLTNFQAELGQVSAEIENLQTRSIEMNAKLENRKKVE 140
                 55666666666667766644456665344444455556666779******************************************************* PP

      DUF812 389 ellpdaeen 397
                  ll  a e 
  KKY20847.1 141 TLLGPAVEE 149
                 ***666555 PP

>> Xrn1_D3  Exoribonuclease 1 Domain-3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   4.2e-05      0.13       1      35 [.      94     128 ..      94     141 .. 0.91
   2 ?    0.6   0.1       0.2     6e+02      23      38 ..     374     389 ..     365     394 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.2e-05
     Xrn1_D3   1 adellkeiaewLKkvkadlvkVslESdSltkfSia 35 
                 +de lk++  +L +++a+l +Vs E + l + Si+
  KKY20847.1  94 CDEVLKSVEIYLTNFQAELGQVSAEIENLQTRSIE 128
                 89*******************************95 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.2
     Xrn1_D3  23 slESdSltkfSiaaiE 38 
                 s++S+ ++++S++++ 
  KKY20847.1 374 SIDSEIFSTKSFQQVS 389
                 8999999999999885 PP

>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.4   8.9e-06     0.027      32     104 ..      67     139 ..      32     141 .. 0.81
   2 ?   -2.4   0.1       1.9   5.6e+03      94     115 ..     230     251 ..     208     253 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.9e-06
       THOC7  32 esteeeleqlkedllldfaafelsierlqllakanerereryeaekeeieseieavreeieelkaqLeearat 104
                  ++e++ ++++ + + +++ f++si+  + ++k+ e    +++ae  ++ +eie++++   e++a+Le  +++
  KKY20847.1  67 VRSEANAASTYHKEQHKYEDFQTSIADCDEVLKSVEIYLTNFQAELGQVSAEIENLQTRSIEMNAKLENRKKV 139
                 4568889999999999****************************************************98875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.9
       THOC7  94 lkaqLeearatranrkeydela 115
                  +aq+ + ++ +++++ y  la
  KKY20847.1 230 INAQILQQQTFLRYKQLYAYLA 251
                 5788889999999999887776 PP

>> DASH_Dad3  DASH complex subunit Dad3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2     0.067     2e+02      32      51 ..     139     183 ..      96     189 .. 0.62
   2 ?    6.6   0.0    0.0027       8.2      22      55 ..     543     576 ..     531     577 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.067
   DASH_Dad3  32 n........................s.teeildgLReLErkiglv 51 
                                          +  e+ l+ L+eLE++   +
  KKY20847.1 139 VetllgpaveeisispqtvraiaeaPvDESWLQALKELETRSVAI 183
                 044444455555555555555555544888999999999987665 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0027
   DASH_Dad3  22 LaselkeLasnsteeildgLReLErkiglvyTLl 55 
                 ++s + +L+++   +  + LR LE++ +l++T+l
  KKY20847.1 543 FDSLMLKLSKSVGGDQRKRLRFLENQYSLILTIL 576
                 3334445566677788899*************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.35s 00:00:01.08 Elapsed: 00:00:00.55
# Mc/sec: 3298.58
//
Query:       KKY20848.1  [L=340]
Description: putative fad dependent [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-30  106.5   0.0    2.3e-30  106.4   0.0    1.0  1  DAO       FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.0   1.3e-34   2.3e-30      71     349 ..       4     321 ..       1     324 [. 0.79

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 1.3e-34
                 HHHHHSSTTSEEEEEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSTTTS.EEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEC CS
         DAO  71 leeelgididyrrtGllslaadeeelealdkllallleagldaelldaeevrelepalpgll.galfypdtgqvdpakltaalaraaealGveilegte 168
                 ++++++  i++r+tG+ ++a++e+++++l+k  +++++ g+++e+l ++e+   ep + +   g l +p+tg+vd + l+ +l  a+ ++G+++   t+
  KKY20848.1   4 VCSKHN--IPHRNTGKWIVAQNEQQMNELQKIHESCKAIGVPTEFLARSEISSGEPDV-RAEaGVLSSPSTGIVDSHSLMTYLEGAFLDHGGDLAVSTT 99 
                 577776..89*******************888888899**********99*****964.34515577******************************** PP

                 EEEEEE....EE.....TCEEEEE.EECT.EEE.E..EEEEEEE--GGGHH.HHHTT.CTTTSEEEE..EEEEEEEEEECCTHSTGSGCSEEEEEEEET CS
         DAO 169 vtglee....ed.....gkvwgve.rttp.gen.d..aadavVnaaGawsd.llgll.keldlpisp..vrgqvlvlkplseklvspaailpvpetddd 249
                 vt++e     ++       +w +  ++t+  +  +  +a+ ++n+aG+++  l++ + ++  + i+p  ++g+++ ++   +++    +i+p p++  +
  KKY20848.1 100 VTSIEPlsssTSgslpgSSGWSITtVATDdASSpTtiTAQNLINSAGLHAIpLSNSIlPPS-RHITPhyAKGTYYSYSG-RLPHPPTTLIYPAPVPGLG 196
                 ****7765541156666666777563443333333334455********975554444444.44555559999999944.34333345*********** PP

                 TTTEEEEEETTSEEEEEESSE......EETTCSS.TSCSHHHHHHHHHHHHHHSGGGCG..EEEEEEEEEE.E.TTS..............SEEEEEEE CS
         DAO 250 grgvyvtprkdgrvlvGgtad......eesgddd.pevdeedidellealrklfPqlgd..vlrkwaGlrp.l.pdg..............lpligetp 323
                 g g+++t + +g +++G++ +      ++s++++ p +d+++  + ++ +++++P +++  ++ +++G+rp l   g              +++i ++ 
  KKY20848.1 197 GLGTHLTLDISGAIRFGPDVEwlpptyPTSATNYtPNPDPNRKIKAISLIKEYLPCIDPslIETSYCGIRPkLkGQGqegktgkgaggdkeDFYIKRED 295
                 ******************999**9997555555579********************75555778*******6232224456777888888999999977 PP

                 TEEEEEEEEECTTTHHHHHHHHHHHH CS
         DAO 324 gvkglylatGhsghGltlapatGkll 349
                 g++g + + G++++Glt+++a+G+ +
  KKY20848.1 296 GFEGWVNLLGIESPGLTSCLAIGEEV 321
                 9**********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2270.30
//
Query:       KKY20849.1  [L=363]
Description: putative nadh:flavin oxidoreductase nadh oxidase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-97  326.9   0.0    1.8e-97  326.7   0.0    1.0  1  Oxidored_FMN     NADH:flavin oxidoreductase / NADH oxidase fa
  ------ inclusion threshold ------
       0.13   11.5   0.1       0.22   10.8   0.1    1.3  1  Glyco_hydro_114  Glycoside-hydrolase family GH114


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.7   0.0    2e-101   1.8e-97       2     341 ..       6     335 ..       5     336 .. 0.91

  Alignments for each domain:
  == domain 1  score: 326.7 bits;  conditional E-value: 2e-101
                   CCS-EEETTEEESSSEEE----S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EEEE CS
  Oxidored_FMN   2 LFkPikignmtLknRivmapmtrlraldkgnvledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskvvv 98 
                   LF+P+k+g m L +R+vmapmtr ra d   v +dl +eyy+qra+ p+tl+ite++ +++k g ++n pgiw++++i++w+k+t+avhe+gs++ +
    KKY20849.1   6 LFQPLKVGRMDLTHRVVMAPMTRFRADDAH-VHTDLGVEYYRQRASTPGTLLITEGTLITEKAGLYPNVPGIWTQDHIAAWKKITDAVHEEGSYIYL 101
                   9*************************9999.999*************************************************************** PP

                   EEE--GGGS..SCSTCEC..SS.ESSSSSTTT-.S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TTT----STTS CS
  Oxidored_FMN  99 qlwhlGreakseyladqevdspsdpvaldaqeeesaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspksnkrtDeyg 195
                   qlw  Gr+  ++ l++q+ d  s   +++ +    + +  ++ ltk+ei q+++++++A+k+a eAgfDgVe h anGYL++qFl+   n+rtDeyg
    KKY20849.1 102 QLWSHGRAGSADLLKKQGFDLVS-SGDIPME---DGAPK-PRPLTKDEIDQYVEDYAQATKNALEAGFDGVELHNANGYLPDQFLQDTANNRTDEYG 193
                   ******************55554.3344444...56677.89******************************************************* PP

                   SSHHHHHHHHHHHHHHHHHHH-SSSEEEEEECE--STTS--HHHH.HHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCCTTHHHHHHCCCH CS
  Oxidored_FMN 196 GslenRarFllevvdaVkeavgeervgyRlSpedvvekgldfaet.aqkivllkelekrlkdgkklalvhaaeprkrgagsvrteqekntefvkevw 291
                   Gs+enRarF l ++da++ ++g++rvg+RlSp++ ++ +  +a+   q+ +l+++l+ r +   +la++ha+e   r +g + +e     +f++e w
    KKY20849.1 194 GSIENRARFSLRIIDAITSVAGQDRVGIRLSPFSSFQGM-RMADPvPQFTYLAEQLAGRYP---NLAYLHAVE--SRVSGITDIEAFAAINFIHEAW 284
                   ***********************************9765.566665899999999999999...*********..5566666676558999****99 PP

                   SSE..EEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCTCG CS
  Oxidored_FMN 292 kkp..litvgriadeekaaeivaegeadLvamgRefladpdlveklkkglpl 341
                    k   ++++g++++e+    +++ ++++ + +gR f+++pdl+++ k+g+p+
    KKY20849.1 285 GKDrvFLRAGGYKRES-SLATAHDEPNTGIVVGRLFISNPDLPRRWKNGVPE 335
                   7643399*********.55667778999999*****************9987 PP

>> Glyco_hydro_114  Glycoside-hydrolase family GH114
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   2.4e-05      0.22     100     133 ..     156     188 ..     142     214 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.4e-05
  Glyco_hydro_114 100 idlaaakGfdgvepDnvDsyesndtgflltaadq 133
                       + a+++Gfdgve+ n ++y   d+ ++ ta+++
       KKY20849.1 156 TKNALEAGFDGVELHNANGY-LPDQFLQDTANNR 188
                      57899***************.5676666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 2357.65
//
Query:       KKY20850.1  [L=885]
Description: putative dna replication licensing factor mcm3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-97  323.6   0.1    6.7e-97  323.0   0.1    1.3  1  MCM           MCM P-loop domain
    3.4e-31  107.7   0.0    6.2e-31  106.9   0.0    1.4  1  MCM_OB        MCM OB domain
    2.3e-23   82.4   1.3    4.8e-23   81.4   1.3    1.6  1  MCM_lid       MCM AAA-lid domain
    3.1e-12   47.0   0.1    1.2e-11   45.1   0.0    2.0  2  MCM_N         MCM N-terminal domain
    5.5e-06   25.9   0.0    7.7e-05   22.2   0.0    2.4  2  Mg_chelatase  Magnesium chelatase, subunit ChlI
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.026   14.4   0.0    1.7  1  AAA_3         ATPase family associated with various cellular 


Domain annotation for each model (and alignments):
>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.0   0.1  2.2e-100   6.7e-97       2     224 .]     291     513 ..     290     513 .. 0.99

  Alignments for each domain:
  == domain 1  score: 323.0 bits;  conditional E-value: 2.2e-100
                 HHHHHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSSSE CS
         MCM   2 veeikelakekdiieklvksiapsiyghedvkkaillqlfggvkkkledktklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaagLtaa 100
                 v++i++l+k+k+++e l++s+apsiygh+ +kka+ll+l+gg++k+l+++t+lrgdin+l+vgdp+taKsqlL++v ++ap a+ t+g+gss++gLtaa
  KKY20850.1 291 VRNINKLSKKKNVFELLAHSLAPSIYGHDYIKKAVLLMLLGGMEKNLDNGTHLRGDINILMVGDPSTAKSQLLRFVLNTAPLAIATTGRGSSGVGLTAA 389
                 789************************************************************************************************ PP

                 EEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--SSSSCCTTS-HHHHSSSSHHHHHHSS CS
         MCM 101 vvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpkagrydkkksvaeninlsaalLsrFD 199
                 v+ d+etg+  leaGa+vl d+Gv+ciDefdkm++ dr+a+hE+mEqqt++iaKaGi+++Lnar+sv+aAanp++g+yd++k  ++ni l+++lLsrFD
  KKY20850.1 390 VTTDKETGDRRLEAGAMVLGDRGVVCIDEFDKMSDVDRVAIHEVMEQQTVTIAKAGIHTSLNARCSVFAAANPIYGQYDTHKDPHKNIALPDSLLSRFD 488
                 *************************************************************************************************** PP

                 EEEEE-SSTTHHHHHHHHHHHHHHH CS
         MCM 200 lifvllDkvdeekDeelaehivslh 224
                 l+fv+ D++++e+D++++eh++++h
  KKY20850.1 489 LLFVVTDDIEDERDRRISEHVLRMH 513
                 **********************998 PP

>> MCM_OB  MCM OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   0.0   2.1e-34   6.2e-31       3     124 ..     118     248 ..     115     250 .. 0.83

  Alignments for each domain:
  == domain 1  score: 106.9 bits;  conditional E-value: 2.1e-34
                 GG--GGGTTSEEEEEEEEEEE---EEEEEEEEEEETTT-.-EEES---.......-SB-....TTT-HHH-EEE-GGGSEEEEEEEEEEE--------- CS
      MCM_OB   3 RdlrsehigklvkveGivtrasevkpklkkavfeckkcgktvevelee.......PrkCe..ekeCeskdpfkletekskfvdfqklklQEspeevpaG 92 
                 R+l+s+h++k++++eGivt++s v+pk++k+v++ +k +  +  e+++       P + +   +e ++ +p++ e   ++++d+q++++QE+pe++paG
  KKY20850.1 118 RTLNSNHLNKMISLEGIVTKCSLVRPKVVKSVHWNEKRQIFHFREYRDqtmavnaPASMSvyPQEDDKGNPLVTEYGYCTYRDHQTISIQEMPERAPAG 216
                 9**********************************999974444444455556667644322112223447777777********************** PP

                 ----EEEEEEEGGGTT---TT-EEEEEEEEEE CS
      MCM_OB  93 elPrslevileddlvdkvkPGdrvevtGiyra 124
                 +lPr ++vil+dd+vd+vkPGdr++++G++r+
  KKY20850.1 217 QLPRGVDVILDDDMVDRVKPGDRIQLVGTFRS 248
                 *****************************986 PP

>> MCM_lid  MCM AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   1.3   1.6e-26   4.8e-23       2      84 ..     582     665 ..     581     668 .. 0.95

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 1.6e-26
                 HHHHHHHHHHHTT--BETCHHHHHHHHHHHHHHHHHTSS.TSSSST--HHHHHHHHHHHHHHHHHHTSSSE-HHHHHHHHHHHH CS
     MCM_lid   2 llrkYiayarekikPklseeakeklseaYvelRkeeeds.krksipitvRqLesliRLseAlAklrlsevvteedveeairllk 84 
                 +++kYi+ya++++kP+l++ a++ ++++Y +lR++++++ +rk  p+t+R+Le+liRL++A+Ak rls+ v+e+d+e a +ll+
  KKY20850.1 582 FIKKYIQYAKSRVKPVLTKGAADLIVRTYSDLRNDDMNErQRKVSPMTARTLETLIRLATAHAKSRLSTRVEEKDAEVAKELLR 665
                 68**********************************65569999***********************************99987 PP

>> MCM_N  MCM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0     4e-15   1.2e-11       6      86 ..      20      95 ..      15     129 .. 0.86
   2 ?   -2.5   0.0       2.5   7.6e+03      62      98 ..     592     623 ..     585     636 .. 0.69

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 4e-15
       MCM_N  6 dFLeefkddsededgekkYrdqlqemaerekttLevdlddLaafdeeLaeailenpkeylplleealkevvkklepsykdd 86
                +FL+       d+   + Yr+ +  m++r+ ++L v++d ++a+++eLa+ +l++p +y ++++ alk+v+ +l ++++++
  KKY20850.1 20 EFLDPT-----DDRAARSYRADIVLMLNRGLRRLIVSIDEIRAHNRELADGLLNQPFDYSQAFDHALKQVISTLPNRSAKE 95
                566655.....66778*******************************************************9988876666 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.5
       MCM_N  62 keylplleealkevvkklepsykddakefpaeltrrf 98 
                  ++ p+l +++ +++ + + +  +d     + ++r+ 
  KKY20850.1 592 SRVKPVLTKGAADLIVRTYSDLRND-----DMNERQR 623
                 6788999999999997777766665.....3333333 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.11   3.2e+02      21      40 ..     345     364 ..     341     374 .. 0.84
   2 !   22.2   0.0   2.6e-08   7.7e-05      93     162 ..     397     466 ..     392     493 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.11
  Mg_chelatase  21 GgHnlllvGppGsGKtmlak 40 
                   G  n+l+vG p + K+ l +
    KKY20850.1 345 GDINILMVGDPSTAKSQLLR 364
                   7889************9876 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 2.6e-08
  Mg_chelatase  93 ggskpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcpcg 162
                   g ++ + G++ l  +Gv+ +DE+ +++     ++ e +e+++vti++a  +++  ar+ + aa+Np    
    KKY20850.1 397 GDRRLEAGAMVLGDRGVVCIDEFDKMSDVDRVAIHEVMEQQTVTIAKAGIHTSLNARCSVFAAANPIYGQ 466
                   5668899*********************9999**********************************7543 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   8.8e-06     0.026      47     114 ..     392     464 ..     349     489 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.8e-06
       AAA_3  47 feekekefefkkGpvf...anllladeinrappktqsalleameerqvtvege..thklpepflvlatqnPie 114
                  ++++ + ++++G+++     ++  de ++ +   + a+ e+me+++vt++++   ++l+    v+a+ nPi 
  KKY20850.1 392 TDKETGDRRLEAGAMVlgdRGVVCIDEFDKMSDVDRVAIHEVMEQQTVTIAKAgiHTSLNARCSVFAAANPIY 464
                 556667777777776522235999*************************9875226789************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (885 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.50
# Mc/sec: 5277.38
//
Query:       KKY20851.1  [L=240]
Description: putative TPA: conserved hypothetical protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-23   81.4   1.2    7.4e-23   80.5   1.2    1.5  1  Cnl2_NKP2  Cnl2/NKP2 family protein
  ------ inclusion threshold ------
       0.17   12.1   1.7       0.19   11.9   0.3    1.8  2  CtsR_C     CtsR C-terminal dimerization domain


Domain annotation for each model (and alignments):
>> Cnl2_NKP2  Cnl2/NKP2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   1.2   8.3e-27   7.4e-23       1      65 []       9      73 ..       9      73 .. 0.99

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 8.3e-27
   Cnl2_NKP2  1 esdILenfLlspasLptiisleqFkklFPrkkrssPqikrLYrdLqrqrsavldkVranIeeevk 65
                es+IL+++Ll+p+sLpti+  +qF+ lFP k+r++P++k LYrdLq+ rs ++d Vr+nI++ev+
  KKY20851.1  9 ESQILTSYLLNPSSLPTILAHDQFRLLFPAKLRKHPHLKPLYRDLQFLRSLDVDIVRENITQEVR 73
                89*************************************************************96 PP

>> CtsR_C  CtsR C-terminal dimerization domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.63   5.7e+03      49      66 ..      65      82 ..      61      86 .. 0.68
   2 ?   11.9   0.3   2.1e-05      0.19      14      45 ..     140     171 ..     136     184 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.63
      CtsR_C 49 drvLdlpleerdelRAri 66
                +++++ ++ + d++R ++
  KKY20851.1 65 RENITQEVRKGDRMRVDM 82
                556666777888888777 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.1e-05
      CtsR_C  14 gdsiseqdaeaiiqrLleegliterEakLmka 45 
                  d++s+++ e++++ + +   ite Ea++m++
  KKY20851.1 140 PDALSYHSLESLLEEMEKAARITESEANMMEN 171
                 589***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1048  (0.0584528); expected 358.6 (0.02)
Passed bias filter:                      838  (0.0467399); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 1571.39
//
Query:       KKY20852.1  [L=502]
Description: putative histone acetylase complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-44  149.1   0.0    3.9e-33  114.4   0.0    2.4  2  MRG              MRG
    7.9e-10   38.5   3.8    1.9e-09   37.3   3.8    1.7  1  Tudor-knot       RNA binding activity-knot of a chromodomain
     0.0042   17.0   3.0      0.012   15.5   3.0    1.8  1  Chromo           Chromo (CHRromatin Organisation MOdifier) do


Domain annotation for each model (and alignments):
>> MRG  MRG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   0.0   6.6e-37   3.9e-33       9     152 ..     290     421 ..     278     423 .. 0.91
   2 !   32.2   0.1     1e-11   6.2e-08     151     197 ..     441     486 ..     426     487 .. 0.88

  Alignments for each domain:
  == domain 1  score: 114.4 bits;  conditional E-value: 6.6e-37
         MRG   9 eeekkkrpeikvkleipeeLkklLedDwelitknkklvkLPaklnvkeILedYvkheakkkaetsereaeknvellkevvdgLriyFdftlgkiLLYkf 107
                 e++++ +p i+  + ip+ +k +L+dDwe++tkn +lv+LPak +v++I+++Y ++e+++++  s      + + l+ev  g+++ F ++lgk+LLY+f
  KKY20852.1 290 EDHFMGKPMIN--MYIPDTIKGYLVDDWEYVTKNYQLVPLPAKYPVNWIMDEYFDQEKVNRRLGSP-----EAQFLEEVRIGIKEWFKRALGKTLLYRF 381
                 78899999999..*************************************************9763.....357************************* PP

         MRG 108 EraqykevlkkaeeekklelessseadqekepseiYGaeHLlRll 152
                 Er+qy +v++ +e  +       + ++ +  + ++YG+eHL+Rll
  KKY20852.1 382 EREQYSDVSAWWEDVT-----DPNDKWYGRGVGDCYGVEHLCRLL 421
                 *********9775433.....3678999****************8 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 1e-11
         MRG 151 llvkLpellaktsmdekklklLlkhleeflefLaenheeyFseseYv 197
                 l vk+pe++++t+md++++++++k+l++f+ +La+n  e+   +eY 
  KKY20852.1 441 LQVKIPEYISHTNMDAQSINTMRKELDQFMSWLARNAPEFMC-KEYT 486
                 779*********************************999987.7775 PP

>> Tudor-knot  RNA binding activity-knot of a chromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   3.8   3.1e-13   1.9e-09       4      54 ..      12      66 ..       9      67 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 3.1e-13
                TTEEEEEETTSCEEEEEEEEEEE.....TSSCEEEEEEETTS-CCC-EEEETTTEE CS
  Tudor-knot  4 gckvlvrkkdgelrkAeilsire.....kkgkyeYYVHYeefNkRlDeWVsaerid 54
                 +kv++++ ++ l++A+i+++r+     k+++ eY VHY ++   +D WV+++r++
  KKY20852.1 12 DEKVFCFH-HELLYEARIVDVRRvdekdKNSPWEYLVHYKGWKNTWDDWVPQDRLR 66
                589*****.**************988766666**********************97 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   3.0     2e-06     0.012       5      43 ..      27      68 ..      26      75 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2e-06
                EEEEEEEETTEEC...EEEEEEETTSTGGGTEEEEGGGCSSH CS
      Chromo  5 rIidhrtdkdgle...leYlVKWkglpysentWEpeenlekc 43
                rI+d+r ++++ +    eYlV++kg+    + W p++ l k 
  KKY20852.1 27 RIVDVRRVDEKDKnspWEYLVHYKGWKNTWDDWVPQDRLRKL 68
                8*****7777777799*******************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 3035.28
//
Query:       KKY20853.1  [L=455]
Description: hypothetical protein UCRPC4_g04014 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-40  139.1   0.0      3e-40  138.4   0.0    1.4  1  DUF1741   Domain of unknown function (DUF1741)


Domain annotation for each model (and alignments):
>> DUF1741  Domain of unknown function (DUF1741)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.4   0.0   1.7e-44     3e-40      70     233 .]     292     450 ..     279     450 .. 0.90

  Alignments for each domain:
  == domain 1  score: 138.4 bits;  conditional E-value: 1.7e-44
     DUF1741  70 yasdlkskpq.idtlldslvnllalfisaGdtfLpdpasYddLfYklvetgevltkfrdlyklalrasvtteseakesakkatnsidnlisvsthfkel 167
                 ya dl+  p+  ++l++ l nl a+++ +GdtfLpdp+sYddLfYkl+e g+vl kf d+y+la        s+ ++sa+++t+s++ li+vsth+++l
  KKY20853.1 292 YAPDLSYLPSiGESLCTPLTNLTAFCLAVGDTFLPDPTSYDDLFYKLIEIGPVLPKFCDAYNLAP------PSSVATSATNTTHSLQILIKVSTHYHNL 384
                 566777777734789*************************************************5......445788899******************* PP

     DUF1741 168 leekkakkkkkeltpeqvlevIkqgYetLslkalqe.gLdkwekyreedektflkkivrvavedark 233
                 l++k+  +++k+++p+ v+evIkqgYetL l + +  + ++w ++re  ek+++kki+r++ved rk
  KKY20853.1 385 LTSKHG-TSQKHQSPAAVAEVIKQGYETLDLPENTAaEFGSWMPWREGTEKALIKKIIRTVVEDSRK 450
                 *99876.5899********************764435999************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.31s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 2916.17
//
Query:       KKY20854.1  [L=261]
Description: putative iron-sulfur cluster assembly accessory protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.2e-20   70.9   0.0    1.2e-19   70.5   0.0    1.2  1  Fe-S_biosyn  Iron-sulphur cluster biosynthesis


Domain annotation for each model (and alignments):
>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   6.9e-24   1.2e-19       3     111 .]     158     257 ..     156     257 .. 0.96

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 6.9e-24
                  EEE-HHHHHHHHHHHHCTTEC.EEEEEECCTSCCGGS.TT.EEEEEEEEESSTSTTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEEEEEEE CS
  Fe-S_biosyn   3 itlteaAaeklkkllaedkke.lrLdvddgggpyskggCsiggkyslvlvdeedeeydevlesnggkvyvksyslvfldeglvldfvedlgtlgLksd 99 
                  +t+t+aA  +l++ll++ + + +r++v++ g       Cs g  y+l++v+++  ++dev+e++g+kv+++s++l  +  g ++d++ed+ ++++ + 
   KKY20854.1 158 MTITPAALVHLRNLLSQPNPKmIRVGVKNRG-------CS-GLAYHLEYVEKP-GSFDEVVEQEGVKVLIDSKALFSI-IGSEMDWQEDKLASRFIFR 245
                  79***************66666*********.......**.************.************************.9****************** PP

                  TCCEEEEEEEEE CS
  Fe-S_biosyn 100 ngilddnvglgk 111
                  n+++++++g+g+
   KKY20854.1 246 NPNIKEQCGCGE 257
                  **********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1758.54
//
Query:       KKY20855.1  [L=721]
Description: putative 3-phytase a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-64  219.3   0.0    1.3e-64  219.0   0.0    1.1  1  His_Phos_2    Histidine phosphatase superfamily (branch 2)
      2e-17   63.2  27.8    6.1e-17   61.6  27.8    1.6  2  MFS_1         Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.08   12.4   0.5       0.14   11.6   0.5    1.4  1  Cir_Bir_Yir   Plasmodium variant antigen protein Cir/Yir/Bir
        1.5    8.6   6.1        2.8    7.7   0.1    2.5  2  Trp_oprn_chp  Tryptophan-associated transmembrane protein (Tr


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.0   0.0   2.8e-68   1.3e-64       2     383 .]     310     681 ..     309     681 .. 0.94

  Alignments for each domain:
  == domain 1  score: 219.0 bits;  conditional E-value: 2.8e-68
                 EEEEEEEEE--SBB-SHHHHHHHHHHHHHHHH.........HHCHHTGCCGGGGT.........--SSSTTS.B-HHHHHHHHHHHHHHHHHCHTCCHT CS
  His_Phos_2   2 LksvvvviRHGdRtPkqkvkksvtspiflsllkkhkeKlkqlktalekkghfpgtyrkveveklqlilkwggelthaGrkqaeelGrqfrqrYplgLlr 100
                 ++++++++RHG R P+ +++ks+ s i            kq+ t++ +k++f+++y        +++l++++ lt++G++++ ++G++f++rY+  L +
  KKY20855.1 310 ITFAQILSRHGGRDPTASKTKSYNSTIVSL---------KQNVTSFTGKYSFLENY--------TYTLGADQ-LTTFGQQEMINSGIKFYKRYE-SLTK 389
                 6899***********************954.........569***********999........********.*********************.9999 PP

                 TSS--TTEEEEEESSHHHHHHHHHHHHHHCHCCC---S-TTSTTGGG-TTTTCCCEEEHHHHCCCCHHCTTSHHTCHHHCHHHTGGHCHHHHCHCCCCC CS
  His_Phos_2 101 lhltykdlkirassegRviaSAaafakGllglegeltdllskdkdllddsnaakdlldeakkklkelltegaeacpafewpikvakrvdelvkylkedm 199
                      ++++ir+sse+Rv++SA +f++G +++         + +   +  +   ++++e    +++++t ++  c+afe+   ++  +d++++ +++++
  KKY20855.1 390 V----STPFIRSSSEDRVVESARNFTQGYHQARL------ANHHGSDSSYPYSITVISE---DDGSNNTLNHGLCTAFED-GAYSDIGDDAQAIFADVF 474
                 8....89***********************8877......6666777777889999999...88899999999*******.****************** PP

                 HHHHHHHCHHHCTTEEEE-HHHHHHHHHHHHHHHH...HHCT-TTGGGCTH..HCHHHHHHHHHHHHHHHC........TTTCCCCHHHHHHHHHHHHH CS
  His_Phos_2 200 deniakrleqlcpgesnllakerwdklercfyekn...kfdiskicdlydemkydalhnrylkdleelyklakvipqEygigpeeklkiGllllnpllk 295
                  ++i+ rl++++pg+ +l++ ++  ++++c++++      +is++cdl++   ++++ ++y++ l ++y +          g+++++++G+++ ++ll 
  KKY20855.1 475 LPSITARLKSDLPGA-QLTQTQTIYLMDLCAFNTVassTGEISPFCDLFTL--SEWHSYNYYETLGKYYSY--------SHGNPLGPTQGVGFTLELLS 562
                 **************8.*******************999999**********..******************........******************** PP

                 HHCTSSSEECCS................CCCECS-SEEEEEE-HHHHHHHHHHCTTTTTBTTB.SSS.........TTT..HCCCS-CT-EEEEEEEEE CS
  His_Phos_2 296 kilndlqrtree................atperhvrlrlyfthdshiysllnaLglpeelagedslaa........ldrlsaspelpymsqivfelyed 370
                 ++l+++    ++                +t++   +l+++f+hd++i+++l+aLgl++++++   l+           ++s+++ +p+++++++e++ +
  KKY20855.1 563 RLLSKPISSLTStshitasinltldtnpTTFPLGLPLYADFSHDNDITTILSALGLYNTSTTHGPLSNttvseahtIGGYSSAWTVPFSARVYVEKMTC 661
                 **********99**********************************************99988777767899*99999********************* PP

                 ........TCTTTEEEEEEEC CS
  His_Phos_2 371 ........ssekkfyvrllls 383
                         sse ++ vr+l++
  KKY20855.1 662 knrpggrkSSE-EELVRILVN 681
                 99999884444.49****987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6  27.8   1.4e-20   6.1e-17      70     297 ..       2     244 ..       1     257 [. 0.75
   2 ?    2.1   0.4     0.016        72     127     149 ..     239     262 ..     236     273 .. 0.77

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 1.4e-20
       MFS_1  70 llfalglllll.fasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivs 161
                 l++++  +++  +++s+  l+v+r++ G+++++++p++++li+ ++++ e    i ++ a++ ++ ++  ll+ ++a   g      Wr++f+i ++++
  KKY20855.1   2 LGWGVI-TICQgVTASFAGLVVCRLFLGIFEAGFVPGAVYLISMYYKRLELQWRINIFFACSIMAGAFSGLLAYAIAYMDGiggyagWRWIFLIEGLFT 99 
                 556666.455534355558*******************************************************7774444567777************ PP

       MFS_1 162 llafvlfllllpeepperkrkspkeee......kgtgpaplvp.....awkallkdpvlwillialllfffgfsg..lltllplylqevlgls..glll 245
                 +l++v +++ lp  p + +  +p+e+       + +++ ++++       k+++ d  +w++ ++ +++  +++g  +++++p++  + +g +  g + 
  KKY20855.1 100 VLVAVWAFWALPGWPEDAQFLTPAERDynirrlADDAGPSASNrwnkqTAKLVFGDVKIWLATVGYIGI--VNTGysTSYFTPTI-ISEFGSGyvG-VR 194
                 *****6666666666666666666665777777333333333334444455677777776444444444..555556*******7.********98.55 PP

       MFS_1 246 aglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt 297
                 a +++  +++v+ ++ l+a+ lsd+l++  r  +++l+ll+a++g+a++ + 
  KKY20855.1 195 AQVMSIPIYIVATCFTLIAALLSDKLKH--RYGFTMLGLLIATVGYAIMLNM 244
                 55567777888888899********999..9999999999999999999887 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.016
       MFS_1 127 sagfslGa.ilgpllggllasslg 149
                 +++ ++Ga ++gp+l g+l  +lg
  KKY20855.1 239 AIMLNMGAvAVGPILMGWLNNNLG 262
                 456667776999*******98887 PP

>> Cir_Bir_Yir  Plasmodium variant antigen protein Cir/Yir/Bir
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.5   3.2e-05      0.14     142     203 ..     378     438 ..     327     444 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.2e-05
  Cir_Bir_Yir 142 skfYdafklLCnmyteldekksnckkylekaneFvekYkelnndsnitkdssynqvLstLsn 203
                   kfY+ +++L ++ t +  ++s++++++e+a++F + Y++    ++  +dssy   ++++s+
   KKY20855.1 378 IKFYKRYESLTKVSTPF-IRSSSEDRVVESARNFTQGYHQARLANHHGSDSSYPYSITVISE 438
                  59***************.77788999***************999999999999776666665 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1   0.00062       2.8     115     157 ..      85     126 ..      63     146 .. 0.81
   2 ?    1.9   2.2     0.036   1.6e+02      45      91 ..     204     250 ..     193     254 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00062
  Trp_oprn_chp 115 ltawpvlalaggvllllagvllllrarswpamssrYerpaarr 157
                   +++w ++ l+ g+ ++l +v+++++   wp+  +++ +pa+r 
    KKY20855.1  85 YAGWRWIFLIEGLFTVLVAVWAFWALPGWPE-DAQFLTPAERD 126
                   567***************************9.88899988875 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.036
  Trp_oprn_chp  45 ltalAlvllAaavAvlavrglgrrvvgvllalagagaavaalslltd 91 
                   ++a ++ l+Aa++   +  + g +++g+l+a +g +++++  +++++
    KKY20855.1 204 IVATCFTLIAALLSDKLKHRYGFTMLGLLIATVGYAIMLNMGAVAVG 250
                   57899999*****************************9998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 4689.62
//
Query:       KKY20856.1  [L=718]
Description: putative c6 finger domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.33   11.1  12.2        0.1   12.8   9.2    1.7  2  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.48   8.6e+03      30      38 ..     140     148 ..     134     148 .. 0.81
   2 ?   12.8   9.2   5.6e-06       0.1       2      32 ..     425     455 ..     424     462 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.48
                 HCCCCTCCC CS
     Zn_clus  30 Ctfysessk 38 
                 C+fy+++s+
  KKY20856.1 140 CQFYTKQSR 148
                 9**999875 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 5.6e-06
                 S-HHHHHCT---STSSSS-HHHHHCTHHHCC CS
     Zn_clus   2 aCdnCrkkKvKCdakkPaCsnCkklnleCtf 32 
                 +Cd+Cr+ +  C ++  aC  C k+ ++C  
  KKY20856.1 425 PCDRCRRLHMDCLKNLTACMGCTKKHAKCAW 455
                 6****************************84 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.25s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 4853.45
//
Query:       KKY20857.1  [L=132]
Description: putative small nuclear ribonucleoprotein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-21   74.8   0.8    3.9e-21   74.5   0.8    1.1  1  LSM              LSM domain
    0.00025   21.5   8.2    0.00038   20.9   8.2    1.3  1  FoP_duplication  C-terminal duplication domain of Friend of P
     0.0036   17.4   0.0     0.0046   17.1   0.0    1.2  1  SM-ATX           Ataxin 2 SM domain
     0.0038   17.3   0.1     0.0072   16.4   0.1    1.5  1  DUF150_C         RimP C-terminal SH3 domain


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.8   8.7e-25   3.9e-21       2      67 .]      48     116 ..      47     116 .. 0.97

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 8.7e-25
                 HHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTET...EEEEEEEEEEEGGGEEEEEE CS
         LSM   2 flkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkk...ekrklglvliRGnnivlisl 67 
                 +l k+++k+v+v++++gre+ G+Lkg+Dq mNlvL+dv+e+++d +   ++r+lgl++ RG+  vlis+
  KKY20857.1  48 DLTKYMDKEVRVKFNGGREITGILKGYDQLMNLVLDDVKEVMRDDEgneNTRSLGLIVARGTLLVLISP 116
                 699*****************************************99*******************9986 PP

>> FoP_duplication  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   8.2   8.5e-08   0.00038       8      61 ..       2      54 ..       1      62 [. 0.84

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 8.5e-08
  FoP_duplication  8 rrggggrggrrgrgrggrggrggrgrgrggrgg.rkkkkpltkeeLDaeLDaYmg 61
                     +++g+ rgg rg+g++g ggrgg+ +grgg++  ++ +kp+ +  LD  L +Ym 
       KKY20857.1  2 SERGNFRGGPRGGGGRGSGGRGGAAGGRGGGQAgQQAEKPKKENILD--LTKYMD 54
                     578999**********9***9*9999999999988888999888898..667775 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     1e-06    0.0046       9      59 ..      50      99 ..      43     114 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1e-06
                HTTTTSEEEEEETTS-EEEEEEEEE-T..T--EEEEEEEETTS......... CS
      SM-ATX  9 tslvGkevevtvknGevyeGifstvslekdfsvvLkmarkvkkans.ksssp 59
                t+++ kev+v+   G  ++Gi+++++    +++vL+ +++v  +++ +++ +
  KKY20857.1 50 TKYMDKEVRVKFNGGREITGILKGYDQ--LMNLVLDDVKEVMRDDEgNENTR 99
                6666689********************..*************9444244444 PP

>> DUF150_C  RimP C-terminal SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   1.6e-06    0.0072       6      48 ..      48      87 ..      45      93 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.6e-06
    DUF150_C  6 dFarflGelVkvklklpvegrkkftGkivevdeet.itlevdgk 48
                d +++ +++V+vk++    g++++tG+++ +d+ + ++l+ +++
  KKY20857.1 48 DLTKYMDKEVRVKFN----GGREITGILKGYDQLMnLVLDDVKE 87
                678999*******99....*************988777776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 918.73
//
Query:       KKY20858.1  [L=627]
Description: putative pab-dependent polyspecific ribonuclease subunit pan3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-48  164.7   0.2    1.9e-48  163.9   0.2    1.3  1  Pan3_PK      Pan3 Pseudokinase domain
    0.00091   18.7   0.0     0.0015   18.0   0.0    1.2  1  Pkinase      Protein kinase domain
  ------ inclusion threshold ------
        0.1   11.9   0.0       0.17   11.1   0.0    1.3  1  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pan3_PK  Pan3 Pseudokinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.9   0.2   3.2e-52   1.9e-48       1     115 [.     496     610 ..     496     622 .. 0.95

  Alignments for each domain:
  == domain 1  score: 163.9 bits;  conditional E-value: 3.2e-52
     Pan3_PK   1 ieellkaiaerlleeldsaleesdlleselskelengrlvrlllklgfinerpefekdkkwsetgdryllkLFrdyvFhqvdeegkpvldlahvlscLn 99 
                 i++++++ia++++ +l+sal+ +d+l+ +ls+elengrlvrll+k+gfinerpe+++d++wse+gdry+lkLFrdyvFhqvd++++pv+dl+hvl+cLn
  KKY20858.1 496 IDAFIREIASEAILALNSALHFEDQLTCQLSRELENGRLVRLLAKFGFINERPEYDHDPRWSENGDRYFLKLFRDYVFHQVDSQNNPVVDLGHVLNCLN 594
                 6899*********************************************************************************************** PP

     Pan3_PK 100 klDagveekilLvsrd 115
                 klDagv+ek++L    
  KKY20858.1 595 KLDAGVDEKVTLEDTL 610
                 ***********97655 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.5e-07    0.0015      16     139 ..     280     416 ..     278     423 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.5e-07
                 EEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE....SSEEEEEEE--TTEB...........HHHHHH.HHSS--HH CS
     Pkinase  16 ykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee....kdelylvleyvegge...........ladlle.rkgslsee 98 
                 yka ++++g+ +++ +i+  + ++   +++++ ++  k+l   n+v + ++f++    +++l++v++y +  +           l++  + ++ +++e+
  KKY20858.1 280 YKAQSSKDGNYYCLRRISGFRLTD---ERAIKTVQNWKSLVNANVVAIHDAFTSrifgDSSLFFVTDYHPLSKtlsehhfgtsnLFKSRQqNNANIPEQ 375
                 566666666666666666665555...55788889999999*****************999*******998777777777766644444436666**** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKi 139
                  + ++a qi+++l+ +H kg+  r + p  +L+  k+ +++
  KKY20858.1 376 VLWSYAIQIANALKAIHGKGLAARVIDPTRVLLTGKNRVRL 416
                 **********************9999999999997777776 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.9e-05      0.17      48     158 ..     306     430 ..     299     439 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.9e-05
                  HHHHHHHHHTS-BTTB--EEEEEE....SSSSEEEEEE--TTEBHHHHHHHT.............CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST CS
  Pkinase_Tyr  48 lleeakimkklkhpnivkllgvct....keepllivteyvkgGdLlkfLrkk.............ekekltlkdllsfalqvAkGmeyLeskklvHrd 128
                   ++ ++  k+l + n+v+++ + t     +++l++vt+y +   L+k L ++             +++++  + l s+a+q+A++++ ++ k l  r 
   KKY20858.1 306 AIKTVQNWKSLVNANVVAIHDAFTsrifGDSSLFFVTDYHP---LSKTLSEHhfgtsnlfksrqqNNANIPEQVLWSYAIQIANALKAIHGKGLAARV 400
                  56677788888899999999999977766778999999875...77888888888999999998778888889999********************** PP

                  -SGGGEEEEETTEEEE-STTTHEETTTSSE CS
  Pkinase_Tyr 129 laarNvLlsenkvvkisDfGLardiekdde 158
                  +    vLl+ ++ v++   ++++ i  d++
   KKY20858.1 401 IDPTRVLLTGKNRVRLNGCAIMDVIRFDQN 430
                  **************9988888877755544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 3920.06
//
Query:       KKY20859.1  [L=516]
Description: putative ubx domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-09   37.0   0.0    4.6e-09   36.0   0.0    1.6  1  UBA_4     UBA-like domain
    6.9e-05   23.0   0.0    0.00016   21.8   0.0    1.6  1  UBX       UBX domain
  ------ inclusion threshold ------
       0.04   13.1   6.5      0.066   12.4   6.5    1.3  1  DUF1682   Protein of unknown function (DUF1682)
       0.75    9.8   3.6        1.2    9.2   0.2    2.4  2  SPDY      Domain of unknown function (DUF317)


Domain annotation for each model (and alignments):
>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0     1e-12   4.6e-09       3      42 ..      16      54 ..      14      55 .. 0.94

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 1e-12
       UBA_4  3 liaqFqaiTGadeekArqlLeannWdLerAislyFdsgea 42
                ++++++++T +d+  A+ lL+++ W++++Ai+ +Fd ge+
  KKY20859.1 16 ALQTYTSVTDQDPIAAIPLLQRSEWNVQIAIAKFFD-GEQ 54
                6899********************************.876 PP

>> UBX  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   3.7e-08   0.00016       5      60 ..     406     483 ..     402     493 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 3.7e-08
                 SEEEEEEEETTST......EEEEEEESSSBHHHHHHHHHHHCCCCCTS................EEEEETTTTEEGGC CS
         UBX   5 datrlqiRlpdGs......rlvrrFkksdtlesvyeyVdsklfekeep................FqLltsfPrreltk 60 
                 d +r++iR+pd +      + +r+F+ s+++e+vy++V+   +++  +                F+L++++P r++ +
  KKY20859.1 406 DFIRVRIRIPDPNdeanmrTVTRKFSTSAKVEDVYAFVECFDVDEGPSkeghledmsnfdfvyaFRLVSQLPPRTIYD 483
                 5678999999865333333689******************99999977889999******************998765 PP

>> DUF1682  Protein of unknown function (DUF1682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   6.5   1.5e-05     0.066     217     314 ..     291     387 ..     266     396 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.5e-05
     DUF1682 217 rlilslrlpssssdleelspllklvlrliDklakraklrpevlkklkktReevekklkkeaeeekaEeaqekkeeekkkereeklaklspeeqrKyee 314
                  +++ +r   s++  e + +l +++ +  ++l+ r++ +   ++  ++ R+e ++++++  + +++ ++q++ ee+ +++ e+   +  ++e r++ +
  KKY20859.1 291 AMSVVCRAAGSTTPSELVAKLATAITANNEALT-RLRAQRSEQQAQRNLRQEQDSAYERSLARDRERARQRREEEAARAAAEKAALEHAAAEERRIHD 387
                 556666666666677899999999999999**9.999999999999****************999999998888888888777777777777777655 PP

>> SPDY  Domain of unknown function (DUF317)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2   0.00026       1.2      40      58 ..     299     317 ..     298     321 .. 0.85
   2 ?    0.6   0.4      0.12   5.5e+02       8      29 ..     374     397 ..     370     404 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00026
        SPDY  40 FtaatPaelvaaftaaLad 58 
                 ++++tP+elva +++a++ 
  KKY20859.1 299 AGSTTPSELVAKLATAITA 317
                 5789************954 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.12
        SPDY   8 rlelrpededae...paaWtiearp 29 
                  le+ ++ e  +   +  W+i+ + 
  KKY20859.1 374 ALEHAAAEER-RihdEQLWRIWKKA 397
                 5566655553.246799*****876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1680  (0.0937029); expected 358.6 (0.02)
Passed bias filter:                      780  (0.0435049); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.47
# Mc/sec: 3316.82
//
Query:       KKY20860.1  [L=653]
Description: putative atp-dependent rna helicase rok1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-26   93.1   0.1    7.1e-26   91.0   0.0    2.2  2  DEAD             DEAD/DEAH box helicase
    7.6e-24   84.2   0.0    5.8e-23   81.4   0.0    2.3  2  Helicase_C       Helicase conserved C-terminal domain
    1.8e-05   24.8   0.2    4.6e-05   23.5   0.0    1.7  2  ResIII           Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.016   14.1   0.0      0.029   13.2   0.0    1.4  1  T4SS-DNA_transf  Type IV secretory system Conjugative DNA tra


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       1.8   7.9e+03      34      60 ..      42      66 ..      36      80 .. 0.65
   2 !   91.0   0.0   1.6e-29   7.1e-26       1     175 [.     106     314 ..     106     315 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.8
                HHHHHHHHSTTSTS-EEEEEESSHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 34 pvlqivyetkgktgpkalivePtreLa 60
                pv+q+v++  +++++ +  v P+r+ +
  KKY20860.1 42 PVVQTVTK--KSKKKHVEAVPPSRKKI 66
                88888865..44444555666666555 PP

  == domain 2  score: 91.0 bits;  conditional E-value: 1.6e-29
                 -HHHHHHHHHHHTT.................CEEEEEESTTSSHHHHHHHHHHHHHHHS..TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEE CS
                 xxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgg.................gdvlvaaeTGsGKTlaflipvlqivyet..kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvll 80 
                 t++Q +a+pl+lgg                  d+l  a+TGsGKT aflip++++++++  k +++  a+i++Pt+eL+ q++ + +k++ ++++ +++
  KKY20860.1 106 TEVQLAALPLLLGGlsqdeptmkekfatrndIDLLTVAPTGSGKTIAFLIPLIHHLSRNrdKAERHVSAIILAPTKELVSQIVVEGRKLCAKTGVHISA 204
                 67899999999977777888888888888756999*********************99999999***************************88855555 PP

                 EETT........................SSHHHHHHHHHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTT CS
                 xxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  81 iigg........................vaardqlskldngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcd 155
                 + +g                        ++ + ++s +  + di+v+tp  l + +s++k  l +v+ l+lDEad lld  f+d+  ++ n++      
  KKY20860.1 205 MRKGmsldassnafdeialheephggdeEPSNTEMSSV-VKSDILVSTPLLLSNSISSKK--LPNVKHLILDEADVLLDPLFRDQTLSVWNAC------ 294
                 55543333344444444444444444333334555555.78***************9999..*******************************...... PP

                 STTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
        DEAD 156 gklqrqvivlSATlpkdvkk 175
                 ++++ ++ + SAT+  ++++
  KKY20860.1 295 TNQSLRTSFWSATIGASIED 314
                 23445699*****9877765 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.39   1.8e+03      12      73 ..     167     251 ..     153     273 .. 0.63
   2 !   81.4   0.0   1.3e-26   5.8e-23      19     111 .]     391     490 ..     382     490 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.39
                 HTTTTSEEEEEESSHHHHHH....HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTS...................SSEEEES CS
  Helicase_C  12 leeeggkilifvntidrlek....vklllekkgikvavlhgelpqnereeileqfnkge...................sdvLiat 73 
                 + e++  ++i ++t++ +++     + l+ k g+++ ++   ++ +    ++++   +e                   sd+L++t
  KKY20860.1 167 KAERHVSAIILAPTKELVSQivveGRKLCAKTGVHISAMRKGMSLDASSNAFDEIALHEephggdeepsntemssvvkSDILVST 251
                 5566667888888888665555555555666688888888888877777777766533334445555555555555555566655 PP

  == domain 2  score: 81.4 bits;  conditional E-value: 1.3e-26
                 EEEEESSHHHHHH.HHHHHHHT.........TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTS CS
  Helicase_C  19 ilifvntidrlek.vklllekk.........gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRt 107
                  l+f++ti+r+    + l   +         + ++avlh++l+ + r +i+++f+k ++ vLi+td ++rGid+ +vn V+n+d+p++ + y++r+GRt
  KKY20860.1 391 FLVFTQTITRAIAlHSEL---RydiplpaggSSRIAVLHSDLSDSARSDIMTRFRKAQIWVLITTDLLARGIDFRGVNGVVNYDIPTSSAGYVHRAGRT 486
                 6899****9773222222...23456777778******************************************************************* PP

                 SSTT CS
  Helicase_C 108 gRag 111
                 gRag
  KKY20860.1 487 GRAG 490
                 **97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0     1e-08   4.6e-05      17      77 ..     129     194 ..     104     280 .. 0.71
   2 ?   -3.8   0.3       2.5   1.1e+04      95     118 ..     594     617 ..     563     634 .. 0.52

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1e-08
                 ......TTSEEEEEESTTSTHHHHH.HHHHHHH-S.........-EEEEESSHHHHHHHHHHGGGG CS
      ResIII  17 eklkskrdkrglikmaTGtGKTlva.aklierllkkgkee....kflflvprkslleqtleefkkf 77 
                 ek+  ++d  +l +++TG+GKT+   + li +l++++++      +++l+p+k+l++q   e +k+
  KKY20860.1 129 EKFATRNDIDLLTVAPTGSGKTIAFlIPLIHHLSRNRDKAerhvSAIILAPTKELVSQIVVEGRKL 194
                 5666577779999**********9999********9988799999*************98554333 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.5
                 --.......-SEEEEEHHHHHHTH CS
      ResIII  95 kakekdstnkkilvttiqsldads 118
                 + k+++++ ++  ++t + +d+++
  KKY20860.1 594 QTKKQKREIRQARISTKSGFDRKM 617
                 223333444444444444444444 PP

>> T4SS-DNA_transf  Type IV secretory system Conjugative DNA transfer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.5e-06     0.029      47     130 ..     139     234 ..     118     334 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.5e-06
  T4SS-DNA_transf  47 vlvvAptrsgKgvgvviPnl..lk......wkq.siVvlDpkgEla.eltskiRkkqgr.kVfvlePanlkts.drfNpldyidlksevetedi 128
                       l+vApt+sgK+ ++ iP +  l+      + + s+++l p +El+ +++ + Rk  ++  V++    +     +  N++d+i+l++e    d 
       KKY20860.1 139 LLTVAPTGSGKTIAFLIPLIhhLSrnrdkaERHvSAIILAPTKELVsQIVVEGRKLCAKtGVHISAMRKGMSLdASSNAFDEIALHEEPHGGDE 232
                      589***************7622332222223467999999999986368899999999988998877665554467999999999998666665 PP

  T4SS-DNA_transf 129 ls 130
                        
       KKY20860.1 233 EP 234
                      44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       923  (0.0514808); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.53
# Mc/sec: 3730.40
//
Query:       KKY20861.1  [L=520]
Description: putative mfs sugar [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-99  333.4  21.2    2.7e-99  333.1  21.2    1.0  1  Sugar_tr  Sugar (and other) transporter
    3.2e-26   92.1  60.5      6e-24   84.6  31.1    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.95    9.3   8.2        6.8    6.5   1.2    3.0  2  PglL_A    Protein glycosylation ligase


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.1  21.2  4.5e-103   2.7e-99       4     452 .]      17     473 ..      15     473 .. 0.92

  Alignments for each domain:
  == domain 1  score: 333.1 bits;  conditional E-value: 4.5e-103
                 HHHHHH.HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH.......HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TT CS
    Sugar_tr   4 vaalgg.llfgYdtgvigafltllkfaknfglsksksskee....ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaak 97 
                 +++l g ll+gY+   +g++l++ +f k f +  + +++ +     s+ +g +v+i+ +G++iG+l + ++g+r+GR+ksl+i+a+++++g v+qa + 
  KKY20861.1  17 LVVLPGfLLYGYNQSCMGGVLSFDSFTKTFPQIDTANTEGAvkkhNSTIQGTVVAIYTLGCLIGALGTVPFGNRLGRRKSLVIVAFIALAGVVIQASSF 115
                 56667779*******************99997766666666788899999************************************************* PP

                 TTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-.TTHHHHHHHCCHHHHHHHHHHGGGS---H CS
    Sugar_tr  98 gknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn.adgwrillglqlvpallllilllflPESP 195
                    s+ +livgR+l Gig G+++++vP+++sE +++k Rg+ v +  ++i++G  +a++++lgl+ +++ +  wr++l+l ++++l+l++  +++PESP
  KKY20861.1 116 ---SLPQLIVGRILGGIGTGGVNAIVPVWQSECTKPKSRGKNVIVLGTFIAIGVALASWINLGLSFVEEsQAAWRFPLALPSLFTLMLAASTFVFPESP 211
                 ...****************************************************************99999*************999999******** PP

                 HHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH......HTTHHHHSH.......HHHHHHHHHHHHHHTTHHHHHHHTTTHHH.HSS-TH CS
    Sugar_tr 196 rylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeee.kaswkellsskt....vrqrlligvvlqifqqltGinaimyysptife.nlglsk 288
                 r+l++kg+ eeak+ l  l+g+  +++++++e+d ++++++++ +     +++s +      +r+ ++++ ++f  +tG nai+yy++tif+ +lg+++
  KKY20861.1 212 RWLISKGRIEEAKAALMILEGQHAVSEAIDQEIDLMQRAMRQTrERGFIDIFRSAGhhqrLIYRFCLAFGANFFALMTGANAITYYATTIFKeSLGFDE 310
                 ***************************************99889666666677767333555566666666777778*************9637***** PP

                 H..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHH CS
    Sugar_tr 289 s..llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRs 385
                 +   +  + v ++++va f +++lvdr+GR++l+l + +gm ++++ +++ +  +++   a si+a++fi++f++ f lg  +  +++++E++pq++R 
  KKY20861.1 311 TkaRILAAAVLTWKIVAAFSSFLLVDRVGRKPLFLASYLGMGVAMAGVAGTVSHIESY--ASSIAAVFFIFFFMIWFPLGSLGANFLYSAEIAPQDLRV 407
                 *99999999***************************************9444444444..68************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 386 kalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                   +ai +a++wl+nf+i+  +p+++++ig ++++ +fa++  +++ +v +f+petkg++lee++ lf
  KKY20861.1 408 HLAAIGTATHWLFNFVIAEATPTALDTIG-WKYYTIFAAVGFVGAAVVILFYPETKGKSLEEMDDLF 473
                 *****************************.*********************************9887 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6  31.1     1e-27     6e-24       6     335 ..      24     407 ..      19     425 .. 0.75
   2 !   21.7  21.4   1.4e-08   8.4e-05       6     178 ..     285     464 ..     284     469 .. 0.82

  Alignments for each domain:
  == domain 1  score: 84.6 bits;  conditional E-value: 1e-27
       MFS_1   6 flsalarsilgpalpl.alaedlg.............ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlll 89 
                 +l++++ s+ g +l+    ++++               + + +g+++++y+lg+++++l + ++++r+Grr+ l++ +++ ++g +++  +  sl+ l+
  KKY20861.1  24 LLYGYNQSCMGGVLSFdSFTKTFPqidtantegavkkHNSTIQGTVVAIYTLGCLIGALGTVPFGNRLGRRKSLVIVAFIALAG-VVIQASsFSLPQLI 121
                 5555555555555554444444323333333444444578889*****************************777777777777.444422234557** PP

       MFS_1  90 vlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.....Wravfyilaivsllafvlfllllpeepperkrks 183
                 v+r+l G+g+g++++++ ++ ++ ++++ rg+ + +l++++++G++l+  +   l+  +      Wr +  +  +++l+++    +++pe+p+    k 
  KKY20861.1 122 VGRILGGIGTGGVNAIVPVWQSECTKPKSRGKNVIVLGTFIAIGVALASWINLGLS-FVEesqaaWRFPLALPSLFTLMLAA-STFVFPESPRWLISKG 218
                 ************************************************99999888.44467899**************988.3355555555555555 PP

       MFS_1 184 pkeee............................kgtgpaplvpawkallkdpvlw.....illialllfffgfsglltllplylqevlglsglllagll 249
                  +ee                              +t ++++++++++  +++ l      ++ + ++  ++g ++++++ +++++e lg++   + + +
  KKY20861.1 219 RIEEAkaalmilegqhavseaidqeidlmqramRQTRERGFIDIFRSAGHHQRLIyrfclAFGANFFALMTGANAITYYATTIFKESLGFD--ETKARI 315
                 55555*******************999999999999999999999999999977333333444444444555555999999999*******..777777 PP

       MFS_1 250 lallalvgailallagrls.drlgrrrrlllallllllaalglallavt.ssavllllvlvliGfglgfv....fpsllalasdlappeeag 335
                 la++ l + i+a ++++l+ dr+gr++  l ++l++ +a +g+a +    +s++ +++++++i f++  +     ++ + + ++ ap++ + 
  KKY20861.1 316 LAAAVLTWKIVAAFSSFLLvDRVGRKPLFLASYLGMGVAMAGVAGTVSHiESYASSIAAVFFIFFFMIWFplgsLGANFLYSAEIAPQDLRV 407
                 88888888888889999999***********************9877665777777775555444333333345555555555666665555 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 1.4e-08
       MFS_1   6 flsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..fa......sslwlllvlrvlqG 96 
                 f  ++++++++  ++ + +e+lg++++ + +l++++    +va++    l+dr+Gr++++l+++l+++++++  +  ++      ss+ ++++  +++ 
  KKY20861.1 285 FALMTGANAITYYATTIFKESLGFDETKARILAAAVLTWKIVAAFSSFLLVDRVGRKPLFLASYLGMGVAMAGVAgtVShiesyaSSIAAVFFIFFFMI 383
                 455556666666666699****************************************************33333443255667466668999999999 PP

       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeeppe 178
                 ++  +++ a   + a+++p++ r    ++ +a+  l   + + + +  ++ +gW + + i+a+v+++++ +++l++pe++ +
  KKY20861.1 384 WFPLGSLGANFLYSAEIAPQDLRVHLAAIGTATHWLFNFVIAEATPTALDTIGWKY-YTIFAAVGFVGAAVVILFYPETKGK 464
                 99999999999*********99999999999988888877778888888899**95.6777777777777788999998765 PP

>> PglL_A  Protein glycosylation ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.9    0.0025        15      10      24 ..     157     171 ..     157     171 .. 0.88
   2 ?    6.5   1.2    0.0011       6.8      11      23 ..     345     357 ..     345     358 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0025
      PglL_A  10 hlATllalGlaaaly 24 
                 +l T++a+G+a+a +
  KKY20861.1 157 VLGTFIAIGVALASW 171
                 588********9966 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0011
      PglL_A  11 lATllalGlaaal 23 
                 lA++l++G+a+a+
  KKY20861.1 345 LASYLGMGVAMAG 357
                 8*********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       864  (0.0481901); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.50
# Mc/sec: 3102.46
//
Query:       KKY20862.1  [L=396]
Description: putative glyceraldehyde-3-phosphate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-57  193.8   0.3    4.2e-57  192.2   0.1    1.8  2  Gp_dh_C          Glyceraldehyde 3-phosphate dehydrogenase, C-
    8.3e-30  103.1   0.3    3.6e-29  101.1   0.2    2.0  2  Gp_dh_N          Glyceraldehyde 3-phosphate dehydrogenase, NA
     0.0061   16.7   0.1      0.056   13.5   0.0    2.4  2  Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation dom


Domain annotation for each model (and alignments):
>> Gp_dh_C  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.19   1.1e+03      89     133 ..      41      89 ..      36     114 .. 0.66
   2 !  192.2   0.1   7.1e-61   4.2e-57       1     158 []     180     337 ..     180     337 .. 1.00

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.19
                 EEEEESST..S-HHHHHHHHHHHHH.TTTTTTEEE.EHSHHHGGGGTTG CS
     Gp_dh_C  89 lvveleke..vtveevnaalkeaae.galkgilsy.teeelvssDlvgd 133
                 +vv+  ++  ++v +v++++k+ +  g+l+ + ++ t + l s D+  +
  KKY20862.1  41 VVVTAINHtcASVSDVIHLIKHDSThGPLQKLGKTvTVDALASGDIAVN 89 
                 5555433323789999999999887777777655414556666676655 PP

  == domain 2  score: 192.2 bits;  conditional E-value: 7.1e-61
                 HHHHHHHHHHHHEEEEEEEEEEEECTTTSBSSSS--.SSTTTTSBTTCSSEEEE-THHHHHHHHSGGGTTTEEEEEEEESSSSEEEEEEEEEESSTS-H CS
     Gp_dh_C   1 LaplakvlndkfgikkglmttvhaytndQkllDgpskkdlrraraaaeniiptstgaakavglVlpelkgkldglAvrVPtpnvsvvdlvvelekevtv 99 
                 Lap+akv+nd fgi++g+mttvha t+ Q++lDg+skkd r++r+   n+iptstgaaka++ Vlp l+gk++g++vrVP+ nvs+vdl +++ek+++ 
  KKY20862.1 180 LAPIAKVINDDFGIVHGFMTTVHASTQSQHVLDGYSKKDRRSGRSIIGNVIPTSTGAAKALKAVLPALDGKVSGISVRVPVANVSMVDLNIQTEKATSL 278
                 8************************************************************************************************** PP

                 HHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGCEEETTTEEEEEEEE CS
     Gp_dh_C 100 eevnaalkeaaegalkgilsyteeelvssDlvgdphssifdaketivveenlvkvvawy 158
                 eev++ +++aa+++l g++ +++eelvssD+ g+p+s+++dak++ +++ +++k++awy
  KKY20862.1 279 EEVIESFRRAAQSNLFGVVTVEDEELVSSDFLGNPYSAVVDAKASVELNPHFFKIIAWY 337
                 **********************************************************9 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.1   0.2     6e-33   3.6e-29       2     100 ..      18     123 ..      17     124 .. 0.92
   2 ?   -1.1   0.0       0.4   2.4e+03      40      81 ..     345     388 ..     327     390 .. 0.67

  Alignments for each domain:
  == domain 1  score: 101.1 bits;  conditional E-value: 6e-33
                 EEEEESTSHHHHHHHHHHHHHTTCEEEEEE-.TS-HHHHHHHHHEETTTEC-...SS-EEEE...TTEEEETTEEEEEE--SSGGGS-CHHHTSSEEEE CS
     Gp_dh_N   2 kvainGfGRIGrlvlralleekelevvaind.ltdletlayllkyDsvhgrf...kgeveae...eealvvngkkikvlaekdpeelpwkelgvdlVve 93 
                 +v+inGfGRIGr vlra l ++++ v ain+ +++++++ +l+k+Ds+hg +    ++v+++   + ++ vng+ki++++e++ e+++w+++gv++V e
  KKY20862.1  18 RVGINGFGRIGRSVLRASLLRTDVVVTAINHtCASVSDVIHLIKHDSTHGPLqklGKTVTVDalaSGDIAVNGQKISLFTERNLEKIDWASHGVEYVAE 116
                 8******************************77*****************873335788888777778******************************* PP

                 -SSS--S CS
     Gp_dh_N  94 stGvftd 100
                 +tG+f++
  KKY20862.1 117 CTGKFKT 123
                 *****86 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.4
                 HHHHHEETTTEC-SS-EEEETTE..EEETTEEEEEE--SSGGGS CS
     Gp_dh_N  40 ayllkyDsvhgrfkgeveaeeea..lvvngkkikvlaekdpeel 81 
                  +ll    ++ +++ +v+ e++   +v + + i+ +++++p+ +
  KKY20862.1 345 CRLLDVLAMMQKVDLQVTNESAPgvIVTKRDAITQVKSREPNTV 388
                 55555666677777777777333325566678999999988765 PP

>> Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.19   1.1e+03     132     152 ..     143     167 ..     116     176 .. 0.72
   2 !   13.5   0.0   9.4e-06     0.056      91     134 ..     247     290 ..     203     312 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.19
                      S....TTEEEEESSHCHHSSHHHHT CS
  Semialdhyde_dhC 132 a....pevkvvvneeedrPtpaava 152
                      a     + +v+  ++e++P+++   
       KKY20862.1 143 ApspdASTFVYKVNTERYPQLRTSE 167
                      344446889999999****998765 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 9.4e-06
                      SC.SEEEEEEEESBSSEEEEEEEEEESSSHHHHHHHHHHHHCSTT CS
  Semialdhyde_dhC  91 te.kvsatcvrVPvlrGhseavtiklklkdveveeveellaaape 134
                       + kvs++ vrVPv    +  ++i++ +k++++eev e +++a +
       KKY20862.1 247 LDgKVSGISVRVPVANVSMVDLNIQT-EKATSLEEVIESFRRAAQ 290
                      34489*********************.6************99933 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2717.34
//
Query:       KKY20863.1  [L=494]
Description: putative vitamin h transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-30  106.4  19.9    1.5e-30  106.4  19.9    1.5  1  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.14   11.8   0.0       0.28   10.8   0.0    1.4  1  UPF0181   Uncharacterised protein family (UPF0181)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4  19.9   1.6e-34   1.5e-30       1     349 [.      61     434 ..      61     438 .. 0.82

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 1.6e-34
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalga........avaslplGrl..sdrfGrrrvlllglllfalglllllfasslwlll 89 
                 l+ ++fl++l+r++++ a    l +dl++ + ++++ +++ ++g+        +v+++p   l  s+++ +  ++++++ ++a+++++ ++a +++ l+
  KKY20863.1  61 LWAMYFLNYLDRNAITQAKLDDLEKDLNLKGNQYNTCISILFVGYvyrpgylyLVMQIPSNMLisSQKVRPSIYMCACMMAWAVTSACTALAKNYTSLV 159
                 6789************99988************88877776666666666677*******9987778997777************77777778888*** PP

       MFS_1  90 vlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.......Wravfyilaivsllafvlfllllpeepperkr 181
                 ++r++ G++++ ++p+++al++  ++++e +  +++l++g+ +++ +  l+++++ + l        W+++f+i ++v++ +++++++llp+ p + ++
  KKY20863.1 160 LVRFFLGVTEAPYYPGAIALLSLFYTRKEIAVRLSILYSGNIIATSFSGLIAAAVFATLDgahglkgWQWLFIIEGVVTFGVAIIGMVLLPDFPLTTWW 258
                 *********************************************9998888888866667************************************** PP

       MFS_1 182 kspkeee............kgtgpaplvp.......awkallkdpvlwillialllfffgfsg..lltllplylqevlglsglllaglllallalvgai 259
                  +++e+             +        +       ++ + ++dp l  +l+++  + + +s+  +  ++p+   e lg++   ++++l   ++lv+ +
  KKY20863.1 259 LTHEERQlaheriqrdtvgV--------EtgkgaraGLAQAVRDPRL--YLLCFMQN-MHLSAcsFNNFFPTV-IEALGFN-RTITLVLTCPPYLVSGG 344
                 **999978877766666652........0333444445556666645..55555555.699999********7.*******.57777778889999999 PP

       MFS_1 260 lallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdla..ppeeagtasglfntagslgg 349
                 +++l++  s r++   r++ + +++ +a++g+++  +t +  + +++++l+  g+  v++ +l ++s  +   pe+    ++++n++ +++ 
  KKY20863.1 345 FSILVAVTSGRFNE--RTWHITACMGMALVGFIMSCATLNIGARYFSCFLFASGAYAVNSFILGWVSATLgqTPEKKTVSLSIVNVIANASY 434
                 99*********999..7777777777777777777777778888888999888777788888877777774444788888888887777665 PP

>> UPF0181  Uncharacterised protein family (UPF0181)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.2e-05      0.28       8      22 ..     259     273 ..     255     295 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.2e-05
     UPF0181   8 LtHeqQQqAVEkIqe 22 
                 LtHe+ Q A E+Iq 
  KKY20863.1 259 LTHEERQLAHERIQR 273
                 9*************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.49
# Mc/sec: 3060.69
//
Query:       KKY20864.1  [L=339]
Description: putative c6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-17   61.9   0.0    6.6e-17   61.4   0.0    1.3  1  Fungal_trans  Fungal specific transcription factor domain
  ------ inclusion threshold ------
      0.085   11.8   0.0       0.11   11.4   0.0    1.1  1  DUF913        Domain of Unknown Function (DUF913)


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   7.4e-21   6.6e-17      80     185 ..      35     134 ..       5     227 .. 0.79

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 7.4e-21
  Fungal_trans  80 ihedfsspssslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppll 176
                   i+  fs p+s ++++q+ + ++l++  + + +++ r+ g  vr+a +lgLhr+p + +       ++ +a  r+Rl+w++++lD++i+   G p  +
    KKY20864.1  35 ISKVFSNPTS-IESIQAAVSVQLFLVSMLRHNAASRLGGAIVRMAFQLGLHRCPVRFSG-----FSAQDASLRKRLFWTIYCLDRYICQSIGLPLAI 125
                   3455677777.***********************************************7.....88888**************************88 PP

  Fungal_trans 177 ddsqinlpL 185
                   +d+++++ +
    KKY20864.1 126 RDDDVDVCY 134
                   ***999865 PP

>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.3e-05      0.11     125     188 ..      31     299 ..      24     307 .. 0.96

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.3e-05
      DUF913 125 AvnilsdfihnePtslavlqeaglteslLeal................................................................... 156
                 A+n +s+ ++  Pts++++q a  ++ +L ++                                                                   
  KKY20864.1  31 AMNSISK-VFSNPTSIESIQAAVSVQLFLVSMlrhnaasrlggaivrmafqlglhrcpvrfsgfsaqdaslrkrlfwtiycldryicqsiglplairdd 128
                 5555655.7899*************************************************************************************** PP

      DUF913 157 ................................................................................................... 156
                                                                                                                    
  KKY20864.1 129 dvdvcyagqerhiqggpnlpdmtpvdstttayqppgpdqrlhlldfltrhaeirgqimelrnksishsqadndravaidaeiskwwnevdewldshnss 227
                 *************************************************************************************************** PP

      DUF913 157 ........................................lakgilpsrEvlasiPnvlsalcLNnaGlelf 188
                                                         l++ + +sr v++++ ++l+ ++L + G+++ 
  KKY20864.1 228 slfvtsshktalailryesiialkrpilatpsqnsayraaLQDCVNASRSVISILHKALKRITLSELGCDAS 299
                 ********************************************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2323.58
//
Query:       KKY20865.1  [L=314]
Description: putative d-glycerate 3-kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0018   18.4   0.0     0.0039   17.4   0.0    1.5  1  AAA_33      AAA domain
     0.0071   15.7   0.0      0.013   14.8   0.0    1.4  1  Zeta_toxin  Zeta toxin
     0.0089   16.4   0.2      0.014   15.8   0.2    1.7  1  AAA_16      AAA ATPase domain
  ------ inclusion threshold ------
      0.046   14.3   0.1       0.16   12.5   0.0    1.9  2  AAA_18      AAA domain
      0.052   13.4   0.0      0.086   12.7   0.0    1.3  1  APS_kinase  Adenylylsulphate kinase
      0.062   12.2   0.6       0.11   11.4   0.1    1.7  3  DUF463      YcjX-like family, DUF463
      0.065   12.9   0.0       0.12   12.0   0.0    1.4  1  SRP54       SRP54-type protein, GTPase domain
       0.07   12.1   0.1       0.11   11.4   0.1    1.3  1  MeaB        Methylmalonyl Co-A mutase-associated GTPase MeaB
      0.091   12.2   0.0       0.16   11.4   0.0    1.3  1  KTI12       Chromatin associated protein KTI12
       0.13   12.0   0.3       0.46   10.3   0.1    1.9  2  AAA_29      P-loop containing region of AAA domain
       0.15   11.8   0.0        3.9    7.2   0.0    2.7  2  PRK         Phosphoribulokinase / Uridine kinase family
       0.15   11.3   0.0        0.3   10.3   0.0    1.3  1  KAP_NTPase  KAP family P-loop domain


Domain annotation for each model (and alignments):
>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.6e-06    0.0039       4      34 ..      36      72 ..      33     120 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.6e-06
      AAA_33  4 lvGlpGsGKstlaerllkklg......avllssdtlr 34
                l Gl+GsGKst+a +l++ l+      ++++s d+l+
  KKY20865.1 36 LTGLQGSGKSTWAGSLVRLLTeehglrTITVSLDDLY 72
                57**************888777777999999999854 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   8.8e-06     0.013       9      66 ..      24      83 ..      17      89 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.8e-06
  Zeta_toxin  9 kypsqerPklillgGqpGAGKselaellkdele..rqgnvvrldpDdlRelhPeyeeilk 66
                k +++++P+++ l G +G+GKs+ a  l + l+  ++ + ++++ Ddl   h +  ++++
  KKY20865.1 24 KAKESKSPVILGLTGLQGSGKSTWAGSLVRLLTeeHGLRTITVSLDDLYLPHDKLVALRE 83
                24689*****************98877666666545889999999999666666555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   9.5e-06     0.014      12      76 ..      18      73 ..      12     239 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9.5e-06
      AAA_16 12 Llsalervrsgrp.elvllsGesGvGKsslvrellralekdg.giflrgkcdqlesaipysalaqal 76
                L +a+++++++ +  ++ l+G +G+GKs+ + +l r l++++   +++   d+l           +l
  KKY20865.1 18 LSAAVKKAKESKSpVILGLTGLQGSGKSTWAGSLVRLLTEEHgLRTITVSLDDL-----------YL 73
                667778666555549999*****************9999997355588888888...........33 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00011      0.16       2      23 ..      35      57 ..      34      97 .. 0.70
   2 ?   -1.3   0.0         2   2.9e+03      59     101 ..     173     232 ..     154     248 .. 0.47

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
      AAA_18  2 lltGtpGvGKttlakeLskrl.g 23
                +ltG +G+GK+t a  L ++l +
  KKY20865.1 35 GLTGLQGSGKSTWAGSLVRLLtE 57
                59***************988633 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2
      AAA_18  59 klldaleenssaleegknlvidghlaeleseaakdikk..................vvLta 101
                 ++++a++++ + +  +++   +g la++  e++  i++                  ++L++
  KKY20865.1 173 QWQQAVKQHQA-ESVHNPRATSGTLANHKLEQLLNINRclerycatfmgpqhfdilIHLDT 232
                 33334444333.1112222333333333333333333333333333333333364444444 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.7e-05     0.086       2      33 ..      31      63 ..      30      76 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.7e-05
                -EEEEEESSTTSSHHHHHHHHHHHHHHTT.--E CS
  APS_kinase  2 gvvvwltGlsgsGKstianalekkLvekg.isv 33
                +v++ ltGl gsGKst a  l + L+e+   ++
  KKY20865.1 31 PVILGLTGLQGSGKSTWAGSLVRLLTEEHgLRT 63
                56788*****************99987543554 PP

>> DUF463  YcjX-like family, DUF463
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   7.3e-05      0.11       3      27 ..      34      58 ..      32      75 .. 0.84
   2 ?   -4.0   0.1       3.6   5.3e+03     148     166 ..     169     187 ..     162     205 .. 0.61
   3 ?   -3.3   0.0       2.1   3.2e+03     373     396 ..     249     272 ..     241     297 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.3e-05
      DUF463  3 lavTGLsraGKtvfitsLvnqLlaa 27
                l+ TGL ++GK+++  sLv+ L+++
  KKY20865.1 34 LGLTGLQGSGKSTWAGSLVRLLTEE 58
                9*******************99843 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 3.6
      DUF463 148 elaaewlaalkeldpsaka 166
                 ++ ++w++a+k+ ++++ +
  KKY20865.1 169 QIEEQWQQAVKQHQAESVH 187
                 4555566665555554444 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.1
      DUF463 373 leavrgteleekeevalfpGelPe 396
                 l  ++g  ++++e +a++ G +P+
  KKY20865.1 249 LIKLKGSGMKDEEVIAFIQGYMPA 272
                 455555556666666666666554 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.8e-05      0.12       3      38 ..      33      69 ..      31      72 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.8e-05
                EEEEEESTTSSHHHHHHHHHHHHHHT.TS-EEEEEES CS
       SRP54  3 villvGlqGaGKTttlaKLaallkke.gkkvllvaaD 38
                ++ l GlqG+GK t ++ L +ll++e g +++ v++D
  KKY20865.1 33 ILGLTGLQGSGKSTWAGSLVRLLTEEhGLRTITVSLD 69
                45589******************99988888888887 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   7.5e-05      0.11      30      64 ..      32      67 ..      10      71 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.5e-05
                EEEEEEE-TTSSHHHHHHHHHHHHHC.TT--EEEEE CS
        MeaB 30 qvvGltGvPGaGkstlvealglelrr.rGkrvavla 64
                  +GltG+ G+Gkst    l+  l++ +G r   ++
  KKY20865.1 32 VILGLTGLQGSGKSTWAGSLVRLLTEeHGLRTITVS 67
                568**************9999988751577765555 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011      0.16       6      45 ..      36      76 ..      31      86 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
                EE--TTSSHHHHHHHHHHHHHH.TT--EEEE-THHHH.TTS CS
       KTI12  6 ltGlPssGKstrakeLakalee.ekrsvvviddeslgiekd 45
                ltGl  sGKst+a  L + l+e ++ + + ++ + l + +d
  KKY20865.1 36 LTGLQGSGKSTWAGSLVRLLTEeHGLRTITVSLDDLYLPHD 76
                89******************996777888888776666665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00031      0.46      27      49 ..      36      58 ..      23      63 .. 0.82
   2 ?   -1.9   0.0       1.9   2.9e+03       6      20 ..     238     253 ..     236     257 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00031
      AAA_29 27 ltGpsGsGKSTllDAiqalLvpa 49
                ltG +GsGKST   ++  lL+ +
  KKY20865.1 36 LTGLQGSGKSTWAGSLVRLLTEE 58
                9**********988888888755 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.9
      AAA_29   6 lvNWgtfdg.htieid 20 
                 ++NW   ++   i+++
  KKY20865.1 238 VFNWRLQQEeALIKLK 253
                 8999987775555554 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0026       3.9       1      29 [.      33      61 ..      33     178 .. 0.56
   2 ?    1.4   0.0      0.15   2.3e+02     128     178 ..     222     278 ..     221     282 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0026
         PRK  1 vIgvagsSGaGkttvarklekifgrekvk 29
                ++g++g  G+Gk+t a  l+ ++ +e+  
  KKY20865.1 33 ILGLTGLQGSGKSTWAGSLVRLLTEEHGL 61
                689*****************999955432 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.15
         PRK 128 elldlkiyvdisi.dlelarklqRDia.....eRGrsleavldsilrrkpdyvnyik 178
                 ++ d+ i +d+ + +  ++++lq   a       G + e v++ i+  +p+y+ y++
  KKY20865.1 222 QHFDILIHLDTEDlQNVFNWRLQQEEAliklkGSGMKDEEVIAFIQGYMPAYELYLA 278
                 688999999985324458999999854222115678889999999999999999875 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0002       0.3       2     116 ..      12     250 ..       4     258 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0002
  KAP_NTPase   2 dlyasaladilseptl.atpivvgLygkWGsGKssllnkledelkefa................................................... 48 
                 dl++s+l   +++ +  + p+++gL+g  GsGKs+   +l + l e+                                                    
  KKY20865.1  12 DLISSSLSAAVKKAKEsKSPVILGLTGLQGSGKSTWAGSLVRLLTEEHglrtitvslddlylphdklvalresdpsnglwrkrgqpgthdealgqqffa 110
                 3455555555554432599***************99999999999888888888888888888888888888888888888888888888888888888 PP

  KAP_NTPase  49 .......................................................................kpvrflfaef.nawsfkggddavaella 75 
                                                                                        + ++++  ++ +  +++++ +++  + +
  KKY20865.1 111 rlrdceahpelripsfdkskfngegdrapitewpvvqgpvdvvvfegwcvgfrpltdnqieeqwqqavkqhQAESVHNPRAtSGTLANHKLEQLLNINR 209
                 888888888888888888888888888888888888888888888888888888888888888887777775555555554134555566677777777 PP

  KAP_NTPase  76 aLadaleeeygqlatkllrakklkalkikgkiklrkacaip 116
                  L + + +  g + +++l++ ++++l++ + ++l   +a +
  KKY20865.1 210 CLERYCATFMGPQHFDILIHLDTEDLQNVFNWRLQQEEALI 250
                 77777777777777777777777777777777776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      655  (0.036533); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 1887.19
//
Query:       KKY20866.1  [L=352]
Description: putative tartrate dehydrogenase decarboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-87  294.2   0.0    1.4e-87  294.1   0.0    1.0  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase
  ------ inclusion threshold ------
      0.015   15.4   0.0      0.039   14.1   0.0    1.7  1  DUF4875   Domain of unknown function (DUF4875)


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.1   0.0   1.6e-91   1.4e-87       7     347 ..       3     343 ..       1     344 [. 0.96

  Alignments for each domain:
  == domain 1  score: 294.1 bits;  conditional E-value: 1.6e-91
                 ESTTHHHHHHHHHHHHHHHHHHHT.-EEEEEE---THHHHHHHSSSS-HHHHHHHHHSSEEEEEE---CSSSSSSHHHHH.HHHHHHTTEEEEEEEEE- CS
      Iso_dh   7 gdgiGpevveaalkvlkaakekag.lelefeevdvGgaaidetgeplpeetleaikeadvvllgavgtpkekevrpengL.laLrkeldlfanlrpvkv 103
                  dgiGpevv+a ++vlk++++ ag  +l f+++d + +++++tg+ +p+  le +k+ d++l+gavg p+  ++ +  gL la+ + l+ +an+rp k+
  KKY20866.1   3 ADGIGPEVVSAGVDVLKQLSASAGtFDLVFKDYDWSSETYKQTGKYIPDGGLEELKKHDAILFGAVGAPDVPDHISLWGLrLAICQPLQQYANVRPTKI 101
                 7*******************999889********************************************9999999998789**************** PP

                 BCCTTCCSSBTHHHHCT-EEEEEEE-SSCGGCSSEEEEETTG.GGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTTHHHH.HHHHHHH CS
      Iso_dh 104 feklkvksplkrevveevdlvivReltggiYfgeekekkgsifteevavdtklyseeeieriaraafelAlkrgkkkvtlvdKanvlksse.lwrkive 201
                 f   + +spl++ + +++d vi+Re+ +g Y+g+    +   +  e+a +++ ++++++eri+r+afe+A+kr++k++t+v+K+n  +    lw ++++
  KKY20866.1 102 F--RGTQSPLRNATTGDLDWVIIRENSEGEYAGQGGRSHRG-QAWETATEVAIFTRHAVERIIRFAFETAQKRPRKHLTVVTKSNAQRNGMvLWDEVAA 197
                 *..89*******99999*****************9888876.58899******************************************9989999999 PP

                 HHHCCTTTTSEEEEEEHHHHHHHHHHSGGGGSEEEE-HHHHHHHHHHHHHHTTSGCC-EEEEEET..SS-EEEEESS---CCCTTSS-S-THHHHHHHH CS
      Iso_dh 202 evaeeeypdielehqlvDsaamqlvkspkqfdVivtkNlfGDilSDeaaalvGslGllpSaslge..kkvaifEavHGsapdiagkdkaNpiavilSaa 298
                 e+ + e+pd++++++lvD+++ ++  +pk  d iv++Nl  DilSD+aaal Gs+G++p ++l +  ++  +fE++HGsa di gk++aNp+++   aa
  KKY20866.1 198 ELSK-EFPDVTMDKMLVDAMTCRMTLNPKSIDTIVATNLHADILSDLAAALAGSIGIAPTSNLDPtrENPSMFEPIHGSAFDITGKGIANPVGTFWTAA 295
                 9998.***********************************************************999999***************************** PP

                 HHHHHTTT-HHHHHHHHHHHHHHHHHTSCCHHHCTTSTCCCHHHHHHHH CS
      Iso_dh 299 lmLryslgleeaAdkiekAvekvleagivTkDlageaakevstsefgda 347
                  mL+  lg+e a++k+ +Ave+v ++gi TkDl+g+a+++  ts+++++
  KKY20866.1 296 EMLNW-LGEETASNKLMEAVENVCAKGISTKDLGGSANTKEVTSAVIEE 343
                 *****.*******************************776677777766 PP

>> DUF4875  Domain of unknown function (DUF4875)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.4e-06     0.039      76     119 ..     184     227 ..     167     228 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.4e-06
     DUF4875  76 qeiedavlyeklkgefkkdftdlyyeekldeavkkrleiePkev 119
                  +++  vl++++ +e  k+f d+  ++ l +a+  r+  +Pk +
  KKY20866.1 184 AQRNGMVLWDEVAAELSKEFPDVTMDKMLVDAMTCRMTLNPKSI 227
                 3467789**********************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 2139.14
//
Query:       KKY20867.1  [L=304]
Description: putative protein rds1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-39  135.2   0.5    2.6e-39  134.5   0.5    1.3  1  Ferritin_2  Ferritin-like domain
  ------ inclusion threshold ------
      0.058   12.9   0.0       0.12   11.9   0.0    1.5  2  DUF455      Protein of unknown function (DUF455)


Domain annotation for each model (and alignments):
>> Ferritin_2  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.5   0.5   2.9e-43   2.6e-39       2     136 .]      28     163 ..      27     163 .. 0.99

  Alignments for each domain:
  == domain 1  score: 134.5 bits;  conditional E-value: 2.9e-43
  Ferritin_2   2 dvdiLnfAlnlEyleaafYtaalegasldd..kalldaevrevaeeiakheeaHveflkaale..GaaavakptfdfafdpfadeksflalaavlEdvg 96 
                 dv +L+fAl+lE+le+ fY++a+++ s++d  +a+++a+++  +  ia++ee+Hv++l++al+  Ga++v+++t+df   pf+d ksf++l+ vlE vg
  KKY20867.1  28 DVTVLQFALTLEHLENVFYKEAISKLSEQDfkDAGYSAKYYSDLCYIAHDEESHVTALTSALSaaGATPVEACTYDF---PFTDVKSFITLSSVLEGVG 123
                 89***************************************************************************...******************* PP

  Ferritin_2  97 vsAYlgaapllsnkelltaaasIlsvEArHaavirtllge 136
                 +sAYlg apl+++k++lt+a+sIl  EA H ++ r++l++
  KKY20867.1 124 TSAYLGGAPLITSKDYLTVAGSILVAEALHTSMQRSALNQ 163
                 ***********************************99985 PP

>> DUF455  Protein of unknown function (DUF455)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.4e-05      0.12      91     122 ..      63      94 ..      18      95 .. 0.89
   2 ?   -3.3   0.0       0.6   5.4e+03     105     120 ..     149     164 ..     136     171 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.4e-05
      DUF455  91 lpreffkDwlkvaedEakHfsllaerLeelgs 122
                    ++++D++ +a+dE  H + l++ L++ g+
  KKY20867.1  63 YSAKYYSDLCYIAHDEESHVTALTSALSAAGA 94 
                 5679***********************99885 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.6
      DUF455 105 dEakHfsllaerLeel 120
                  Ea H s+ ++ L+++
  KKY20867.1 149 AEALHTSMQRSALNQV 164
                 5899999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1928.76
//
Query:       KKY20868.1  [L=487]
Description: putative gat domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-07   29.9   0.2    1.4e-06   28.5   0.2    1.8  1  GAT             GAT domain
    1.3e-06   28.3   0.0      2e-05   24.5   0.0    2.2  2  VHS             VHS domain
  ------ inclusion threshold ------
      0.023   14.7   0.0      0.041   13.9   0.0    1.4  1  NTase_sub_bind  Nucleotidyltransferase substrate binding prot


Domain annotation for each model (and alignments):
>> GAT  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.2   2.3e-10   1.4e-06       3      75 ..     223     296 ..     221     298 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 2.3e-10
         GAT   3 naklLsemLsstepdeellenellkeLyetckamqpriqklieet...adeedllaelLqlNDeLnnvlerYerlk 75 
                 +a lL++m++ t+ + el+ + ++++L+e+++a+ ++++++i++    +d+e +l+++L++ ++ + v++++ +++
  KKY20868.1 223 TASLLQQMVKGTPLN-ELEMEPTIQQLAESVQAAVKSLMRYIDSRtpyPDNE-TLDTMLKAYEKCSFVMLQHWQAV 296
                 689********9954.788899**********************5566****.****************9997776 PP

>> VHS  VHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   3.3e-09     2e-05      25     127 ..      61     163 ..      51     174 .. 0.78
   2 ?    1.2   0.0      0.05     3e+02      77     118 ..     216     260 ..     215     285 .. 0.63

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 3.3e-09
                 HHHHHHHHHHHCSTCHHHHHHHHHHHHHT-...SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHCTTTCHCS.HHHHHHHHHHHHHHH CS
         VHS  25 slileicDlinekeagpkeavrlikkkins...knphvallaLklldalvkNcGskfhleiaskeflnelvklilekknsklakvkkkvlelleeWada 120
                  +  ei Dl + ++  +++av +ik  +++   ++p   + a+ l+++l kN G++f ++ ++kef+++ + +++ +   +   v + + + le ++ +
  KKY20868.1  61 VYLTEIVDLAEASPGAARKAVYTIKEVLDKkskSKPYARYNAIMLIEILGKNPGKSFTDNLGDKEFVETAKYVLQYERDVS---VAESLRRSLEWLEST 156
                 4567899999999************999885556788999****************************9988765544444...666666666655555 PP

                 TTT-TTG CS
         VHS 121 fknkpel 127
                   n+++l
  KKY20868.1 157 GGNDEKL 163
                 5555555 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.05
                 HHHHHHTSHHHHHHHHHHHHCTTTCHCS....HHHHHHHHHHHHH CS
         VHS  77 kfhleiaskeflnelvklilekknsklak...vkkkvlelleeWa 118
                 ++h+ i++  +l+++vk ++ ++ + + +   + + v  +++++ 
  KKY20868.1 216 RIHEAISTASLLQQMVKGTPLNELEMEPTiqqLAESVQAAVKSLM 260
                 678888888888888887777766655442233344444444444 PP

>> NTase_sub_bind  Nucleotidyltransferase substrate binding protein like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.8e-06     0.041       5      92 ..     219     302 ..     215     305 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.8e-06
                     HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCTTTHHHHHHHHHTTS-S-HHHHHHHHHHHGC CS
  NTase_sub_bind   5 nlekAlasLeeavelsrddplsdlerdgvIqrFEftyElawkllkryleeegisaeavsprdliReaaeagliedgevwlemledRnl 92 
                     +  +  + L+++v+    +pl++le + +Iq+   ++  a+k l ry+ ++     +++  d++ +a+e+  +   + w ++le+Rn+
      KKY20868.1 219 EAISTASLLQQMVKG---TPLNELEMEPTIQQLAESVQAAVKSLMRYIDSRTPY-PDNETLDTMLKAYEKCSFVMLQHWQAVLEARNR 302
                     555666778888887...8*******************************8887.45588999999*********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.48
# Mc/sec: 3059.46
//
Query:       KKY20869.1  [L=588]
Description: putative alpha-glucosidase maltase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.7e-104  348.3   2.1   9.8e-104  347.5   0.1    1.9  2  Alpha-amylase    Alpha amylase, catalytic domain
    1.3e-06   28.4   0.0    2.9e-06   27.3   0.0    1.6  1  Malt_amylase_C   Maltogenic Amylase, C-terminal domain
     0.0018   17.5   0.3     0.0047   16.1   0.1    1.8  2  hDGE_amylase     Glycogen debranching enzyme, glucanotransfer
     0.0045   17.4   0.0      0.014   15.8   0.0    1.9  1  Alpha-amylase_C  Alpha amylase, C-terminal all-beta domain


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.5   0.1  2.2e-107  9.8e-104       1     334 [.      29     391 ..      29     396 .. 0.95
   2 ?    0.0   0.4      0.11   4.9e+02     166     272 ..     414     523 ..     393     539 .. 0.44

  Alignments for each domain:
  == domain 1  score: 347.5 bits;  conditional E-value: 2.2e-107
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHSTTSGGG CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifkspqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkkkgepkr 96 
                    GD+kG+i++++YlkeLGv+++w sPi+kspqad+gYdi+dy++idp++Gt  d+++Li+ ++  ++k+++DlV+NHts++h+wf es ++k++pkr
     KKY20869.1  29 GDIKGMISQVPYLKELGVDVLWTSPIYKSPQADMGYDISDYKSIDPRYGTLSDVDTLITTLKIHDMKLMMDLVANHTSNQHAWFLESARSKTSPKR 124
                    9*********************************************************************************************** PP

                    CCC-E...........ESS-STTC-..TTTTCSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCCCCCCCCTTT-SEEEETTCCCTTTCCCC. CS
  Alpha-amylase  97 dyyiwkegk.....eekeppnnwks..lfdgsaweydekaqeyylhlflkklpdLnteneevrkelkdvvkfwlekgidGfRlDvvkhvskveal. 184
                    d+yiwk+++     + +eppnnw +   + +saw+yd+ ++e+yl lf+ ++pdLn+en+evr++++dv++fwle+g++GfR Dv++++sk++++ 
     KKY20869.1 125 DWYIWKPPRsisadGVPEPPNNWAQilGDANSAWTYDKATGEFYLSLFTPEQPDLNWENQEVREAVQDVMRFWLERGASGFRCDVINLISKDQNFp 220
                    ********99**9999*********777889************************************************************8888* PP

                    .................HCCHCCHHHHHHHHHHHTCCGTT-EEEEE-.TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTS..TTSB-SS-HH CS
  Alpha-amylase 185 .................esngeflheftqalnetvasrkevmtvgEv.ssdasedlrvyttearlelemvldfphldvaqkaki..keqlksisak 260
                                     ++ng+++he+ ++l +tv s+++++tvgE+ + ++ ++  + + ++  el+m++ f  +d+++++++  k  l +  + 
     KKY20869.1 221 dapitiptqkyqpgeiyYRNGPRMHEYIHELYTTVLSKYDTITVGEMpFVSDINEIIRTVGAKAEELNMIFIFDIVDIDNDMSAgtKFSLYDWPLS 316
                    **********************************************944556667888888899999999999999999988875567777777** PP

                    HHHHHHHHHHHHS-CCCTTCEEES--TTS--HHHHTTSSTTTT.HHHHHHHHHCCCTSSSEEEEETTCCCT---- CS
  Alpha-amylase 261 klkellkkwlkaleeaaeeavtflgnHDqeRilsrlgddsaea.ekklklaaillltlrGvpviYyGeEigmtgg 334
                    +lk++++kw++a+ e++ ++++f++nHDq+R++sr+ dds ++ ek +kl+a+++ tl+G  ++Y+GeE gm ++
     KKY20869.1 317 DLKDIVSKWQRAMIENDGWNSVFVENHDQPRSVSRYCDDSDATrEKGAKLLALMQTTLSGSLFVYQGEEFGMRNV 391
                    ***************************************9766899**************************997 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.11
                    T....-SEEEETTCCCTTTCCCCHCCHCCHHHHHHHHHHHTC..CGTT-EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB- CS
  Alpha-amylase 166 g....idGfRlDvvkhvskvealesngeflheftqalnetva..srkevmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlk 255
                    +    +d   lD  k + +  ++++n+ +  ++t   n+     + k  m v+  +++ +       +++ +el+ v +f +++++++ + ke+  
     KKY20869.1 414 KamypVDSAKLDECKTILQ-RKARDNARTPVQWTSGPNAGFCpaHVKPWMRVNDDWETCNA-ETSQNFQSDSELS-VWQFWQQSLKNRKRHKETFV 506
                    4455556666666666555.33334444444444444433333333333333333333332.2233333444444.44444444444444444444 PP

                    SS-HHHHHHHHHHHHHH CS
  Alpha-amylase 256 sisakklkellkkwlka 272
                      + ++++++ k+++++
     KKY20869.1 507 YGDYEEIDHANKQVFAY 523
                    44444444444444444 PP

>> Malt_amylase_C  Maltogenic Amylase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   6.4e-10   2.9e-06       1      68 [.     508     577 ..     508     583 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 6.4e-10
                     -EEEE---S-TTEEEEEEEETT.EEEEEEEESS-EEEEE--G.GGTT-EEEETTTTEE-----SSEEEEE CS
  Malt_amylase_C   1 GsfefleadnrkvlaYlReyed.etilvvaNrsaqaveldls.elagrvpvelfggeefpaigelytltL 68 
                     G++e ++  n++v+aYlR+ e   + lvv+N s + ve++++  ++  +++    g+  p+ +++  ++L
      KKY20869.1 508 GDYEEIDHANKQVFAYLRKAESgSKALVVLNWSGKTVEWTVPeTIEVEEWTISTYGKGTPQTKDKRVIKL 577
                     9********************9899*****************8555555554455555555555545555 PP

>> hDGE_amylase  Glycogen debranching enzyme, glucanotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.1e-06    0.0047      30     112 ..      40     114 ..      28     123 .. 0.87
   2 ?   -4.1   0.0       1.4   6.2e+03      77      99 ..     274     296 ..     268     297 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.1e-06
                   HHHHTT--EEEES--EEE-TT--TTSEEEEEEE-TTT-.....SSC.HHHHHHHHHHHHHH--EEEEEE--SEEETT-CCCCC CS
  hDGE_amylase  30 eikekgYnmiHftPlqelGesnSpYSiadqleldkelfeekdkeekeedveklvkklekeygllsltDvVlnHtannskwlee 112
                     ke g +++  +P+ +  + +  Y i+d  ++d++         + +dv++l+++l+  +++  ++D+V nHt+n+ +w  e
    KKY20869.1  40 YLKELGVDVLWTSPIYKSPQADMGYDISDYKSIDPRYG-------TLSDVDTLITTLK-IHDMKLMMDLVANHTSNQHAWFLE 114
                   5688899999999**********************994.......7899*****9886.689999***************876 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 1.4
                   HHHHHHHHHHHHHH--EEEEEE- CS
  hDGE_amylase  77 edveklvkklekeygllsltDvV 99 
                   +++ ++v    +e++++++ D+V
    KKY20869.1 274 NEIIRTVGAKAEELNMIFIFDIV 296
                   44555566668999999999998 PP

>> Alpha-amylase_C  Alpha amylase, C-terminal all-beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.2e-06     0.014       3      37 ..     512     548 ..     510     574 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.2e-06
                      EEEETTSSEEEEEECT.TT.EEEEEEE-SSSSEEECE CS
  Alpha-amylase_C   3 sakdeenkviaFeRgd.ge.kllvvfNfhpsnsrqdy 37 
                      + ++++++v+a++R++ ++ k+lvv+N +++ ++ ++
       KKY20869.1 512 EIDHANKQVFAYLRKAeSGsKALVVLNWSGKTVEWTV 548
                      66899***********96669******9996664444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 3700.83
//
Query:       KKY20870.1  [L=428]
Description: putative saga complex component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-29   99.4   1.6    7.5e-29   99.4   1.6    2.1  2  SCA7        SCA7, zinc-binding domain
  ------ inclusion threshold ------
       0.12   10.7  11.9       0.16   10.3  11.9    1.2  1  CDC45       CDC45-like protein
        0.5   10.3   3.7        5.3    7.1   0.8    2.4  2  zf-C2HC_2   zinc-finger of a C2HC-type
        1.6    9.2   6.5       0.39   11.2   2.5    1.9  2  OrsD        Orsellinic acid/F9775 biosynthesis cluster protei
        2.6    7.6  33.2        3.6    7.1   3.5    2.7  2  SR-25       Nuclear RNA-splicing-associated protein
        4.2    6.0   9.2          7    5.3   9.2    1.4  1  Presenilin  Presenilin


Domain annotation for each model (and alignments):
>> SCA7  SCA7, zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   1.7         6   1.8e+04       3      11 ..     114     122 ..     111     126 .. 0.42
   2 !   99.4   1.6   2.5e-32   7.5e-29       2      67 ..     198     263 ..     192     264 .. 0.95

  Alignments for each domain:
  == domain 1  score: -4.7 bits;  conditional E-value: 6
        SCA7   3 kkkkkkkkk 11 
                 ++k+kkkk+
  KKY20870.1 114 QEKAKKKKE 122
                 233333333 PP

  == domain 2  score: 99.4 bits;  conditional E-value: 2.5e-32
        SCA7   2 kkkkkkkkkkkkevdvdkqCGVilpngkpCtRsLtCksHslgakraVegRskpfdvLlaeykkkkq 67 
                 +++k k +k k++vdv+kqCGV+l n+ +C+RsLtCk+Hs+gakr V+gRs p+d+Ll++y+kk+q
  KKY20870.1 198 DEQKPKVPKPKGPVDVEKQCGVLLGNNAQCARSLTCKTHSMGAKRGVPGRSLPYDMLLQAYQKKNQ 263
                 57788999********************************************************98 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  11.9   5.2e-05      0.16     108     196 ..     111     208 ..      86     278 .. 0.47

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5.2e-05
       CDC45 108 DDgdieeeleeereayealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrk..sksdeeee.....sddddersrkrrrse.... 195
                   ++  e+ ++++ea ea  +e+ + e+ +e++e+ +   ++++e + +  +++       +k+   s +d+e++      dddd++++k+++++    
  KKY20870.1 111 KSKQ--EKAKKKKEAREAAAREKAKAERGDEKDEDGKAGPDDDSEIKVEPAKTSGA-----RKSAikSAKDDEKKgkkrkADDDDKEPKKKKKKDeqkp 202
                 3333..45555555555555555544222111111111111111111111111111.....11112111111111344555555555555555553444 PP

       CDC45 196 .....p 196
                      +
  KKY20870.1 203 kvpkpK 208
                 444440 PP

>> zf-C2HC_2  zinc-finger of a C2HC-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.8    0.0018       5.3       1      10 [.      86      95 ..      86     110 .. 0.77
   2 ?    3.8   0.1     0.019        57      10      21 ..     308     320 ..     307     327 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0018
   zf-C2HC_2  1 elvpCpkCgR 10
                e++ C++C+R
  KKY20870.1 86 ETIICKHCKR 95
                79******** PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.019
   zf-C2HC_2  10 RsF.npdrlekHe 21 
                 RsF np +l+ H+
  KKY20870.1 308 RSFaNPQPLAQHI 320
                 9***********4 PP

>> OrsD  Orsellinic acid/F9775 biosynthesis cluster protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.5   0.00013      0.39       9      54 ..      85     132 ..      81     155 .. 0.70
   2 ?   -1.6   0.1       1.2   3.6e+03      53      79 ..     179     205 ..     151     238 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
        OrsD   9 yrvliCreCkyavlpselerHLrk..rhrqlkrektqelletvehems 54 
                 ++ +iC++Ck  vl++++++H+ +  + +q k +k++e +e+  +e+ 
  KKY20870.1  85 LETIICKHCKRPVLKKNAKEHITAciKSKQEKAKKKKEAREAAAREKA 132
                 6789*****************985335566666666666666644433 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
        OrsD  53 mslrqldelareaeavslpsaesepip 79 
                  ++r+ d+ ++e+++ + ++ +++ +p
  KKY20870.1 179 GKKRKADDDDKEPKKKKKKDEQKPKVP 205
                 455556655555555555554444443 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.5    0.0012       3.6      67     110 ..       9      51 ..       2      74 .. 0.64
   2 ?    5.4  21.8    0.0042        13      21     121 ..      99     203 ..      89     221 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0012
       SR-25  67 ssssssssssssssssssssddrkkrgkkkdkkkkkkkkkkkkk 110
                 ss +ss+ ss   +s  + s+d++k gk k k+  kkk    +k
  KKY20870.1   9 SSVASSTGSSFVDASGFKFSKDDQKIGKVKLKRPTKKKAE-ANK 51 
                 3333333333344455566666788888888888888773.333 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0042
       SR-25  21 kksskdssrsssasksqsrkassasekeeerskekkkk...krrr.ssssssssssssssssssssssssddrkkrgkkkdkkkkkkkkkkkkkkekkk 115
                 kk  k++  ++  sk+++ k+++ +++++ r+k k+ +   k +  +++  ++s +  + + +s++ +s  +  k   kk kk+k+    k+ kk+kkk
  KKY20870.1  99 KKNAKEHITACIKSKQEKAKKKKEAREAAAREKAKAERgdeKDEDgKAGPDDDSEIKVEPAKTSGARKSAIKSAKDDEKKGKKRKADDDDKEPKKKKKK 197
                 445555556666666665555555444443333333321002222133444555555555666666666655566666666666666665666666665 PP

       SR-25 116 akekak 121
                  ++k k
  KKY20870.1 198 DEQKPK 203
                 554333 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   9.2    0.0023         7     237     316 ..     115     197 ..      80     244 .. 0.39

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0023
  Presenilin 237 eeeeaekkkeeasesskeeeseeesseksaqsse..........................seeeseeesseaessaeesseekeseessesseeeeeee 309
                 e+++++k+++ea+ ++k+++++ +++++     +                          +      +++++e++ ++++++++++e +++++      
  KKY20870.1 115 EKAKKKKEAREAAAREKAKAERGDEKDE-----DgkagpdddseikvepaktsgarksaiK------SAKDDEKKGKKRKADDDDKEPKKKKK------ 196
                 1111111111111111111111111111.....0111222222232222221111111110......11111111111111111111111111...... PP

  Presenilin 310 eeeeese 316
                       +
  KKY20870.1 197 ------K 197
                 ......1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2259  (0.125997); expected 358.6 (0.02)
Passed bias filter:                      830  (0.0462937); expected 358.6 (0.02)
Passed Vit filter:                       150  (0.00836633); expected 17.9 (0.001)
Passed Fwd filter:                        45  (0.0025099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.97u 0.37s 00:00:01.34 Elapsed: 00:00:00.53
# Mc/sec: 2437.40
//
Query:       KKY20871.1  [L=167]
Description: putative phosphotransmitter protein ypd1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00092   19.4   0.0     0.0013   18.9   0.0    1.3  1  Hpt         Hpt domain
  ------ inclusion threshold ------
       0.02   14.5   0.3      0.032   13.9   0.3    1.3  1  DUF4903     Domain of unknown function (DUF4903)
      0.073   12.9   0.0       0.14   12.0   0.0    1.4  1  FtsK_gamma  Ftsk gamma domain


Domain annotation for each model (and alignments):
>> Hpt  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.2e-07    0.0013      27      83 ..      84     143 ..      60     148 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.2e-07
                 HHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH.HHH..HCTSCHHHHHHHH....HHHHHHHHHH CS
         Hpt  27 qelaraaHtLKGsagmlGltelaelahelEd.lld..ragelelepelle....alkallealr 83 
                 +++   a +LKGs++++G+ ++a l+  + + +++   a++ e      +    +l++ll al+
  KKY20871.1  84 EKIVFQAQKLKGSSATIGFVAVASLCGNIGEeAIRirDASDAESM----QkrrlHLRRLLIALN 143
                 66777899*******************997724444222222222....134456666666665 PP

>> DUF4903  Domain of unknown function (DUF4903)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3   5.3e-06     0.032     134     171 ..      11      46 ..       4      68 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.3e-06
     DUF4903 134 Gyynvktheiefivdynmmnvrsecflqtidksrldny 171
                  y+n++th  + i d nm  v  ++f  tidk+ +++ 
  KKY20871.1  11 DYFNINTH--THIWDQNMTYVPDDTFSDTIDKNIFNEI 46 
                 69*****9..589*******************987764 PP

>> FtsK_gamma  Ftsk gamma domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.3e-05      0.14      17      54 ..      54      92 ..      39      97 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.3e-05
  FtsK_gamma 17 egkaStSllQRrlriGYnRAarli.dqLeeeGiVgpaeg 54
                e++   Sl+   ++iG++ + r++ d +e e+iV +a++
  KKY20871.1 54 ERNFTRSLVEEYFSIGWTTSKRMMsDLMEYEKIVFQAQK 92
                5677889*****************667899999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1061.24
//
Query:       KKY20872.1  [L=789]
Description: hypothetical protein UCRPC4_g04033 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-64  216.7  29.9      5e-64  216.7  29.9    3.3  4  YL1       YL1 nuclear protein
    4.6e-13   48.7   2.7    8.9e-13   47.8   2.7    1.5  1  YL1_C     YL1 nuclear protein C-terminal domain


Domain annotation for each model (and alignments):
>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1   5.7         2   1.8e+04      45      68 ..       6      26 ..       2      34 .. 0.35
   2 !  216.7  29.9   5.6e-68     5e-64       1     244 []      39     279 ..      39     279 .. 0.90
   3 ?   -2.7   0.1      0.59   5.3e+03      81     103 ..     304     327 ..     292     369 .. 0.56
   4 ?   -5.2  11.2         2   1.8e+04      54     115 ..     376     437 ..     365     497 .. 0.48

  Alignments for each domain:
  == domain 1  score: -5.1 bits;  conditional E-value: 2
                xxxxxxxxx.xxxxxxxxxxxxxxx RF
         YL1 45 eeensDsdf.dsdeedeesdeeede 68
                e  ++D+++ +sd++   sd+++d 
  KKY20872.1  6 E--QVDMEMmESDSS--GSDSDNDS 26
                2..255554322222..12222222 PP

  == domain 2  score: 216.7 bits;  conditional E-value: 5.6e-68
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1   1 RarRstAGnrlkkLleqeeeedelellFaEeedDeefeseeeeeeeensDsdfdsdeedee...sdeeedeeegekelerqerkkrkkekkkrkaqkkk 96 
                 Ra+R+tAGnr++ L+e e  +de+ llFaE edDe+ e e e  ++   D++++s++++++   +++++d++egeke++rq++++r    kkrkaq++ 
  KKY20872.1  39 RAKRATAGNRMANLIERED-DDEVALLFAEAEDDEDVEFEGEGADD--WDVQMESSSDEDDqgpNAAGDDDLEGEKEIQRQAKAER---AKKRKAQEAL 131
                 9**************9999.**********9999966666666666..8****9999888899*999*******************...4777777666 PP

                 xxxxxxxxxxxxxxxxxx.....xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  97 skkkkkkqkkkkkkkidp.....qak.eprpkkkseraswlpaeslltpkrRkssRastvenkeqleerlkereerrkkilermrkkaarkkkkkkerp 189
                 +k        +kk++idp     +++ +prpkkkser+swlp++++ +p  R+ssR++t++nke ++++lk++e +r+++l++m+ +++ + k k  ++
  KKY20872.1 132 TKLPA----IRKKVTIDPnaqtqSGTpAPRPKKKSERVSWLPEANE-APV-RASSRKQTMANKEVTHKKLKDQEVKRRQLLAQMQVAERIRAKSKP-KK 223
                 66655....45888899987654333466*************9777.888.***************************************999888.9* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
         YL1 190 lTQeerLaeAketEeeNlksLnryeeqEeekkkeqraklaalkrrkl.gpvirflS 244
                 lTQ++rLaeA ++E++N+ksLnr+e +E+++ +eq a+laal++rkl gpv++f+S
  KKY20872.1 224 LTQADRLAEASRVEKKNAKSLNRWETMEKKRAEEQAARLAALHNRKLeGPVLTFWS 279
                 *******************************************************9 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.59
                 xxx.xxxxxxxxxxxxxxxxxxxx RF
         YL1  81 kkr.kkekkkrkaqkkkskkkkkk 103
                 +   +k+ +krk+++  ++++  +
  KKY20872.1 304 EYGgEKRGRKRKQADLDPNTTGLA 327
                 222555556666555555554432 PP

  == domain 4  score: -5.2 bits;  conditional E-value: 2
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......x RF
         YL1  54 dsdeedeesdeeedeeegekelerqerkkr.kkekkkrkaqkkkskkkkkkqkkkkkkkidp......q 115
                 ds++     +++ de e +k  +r e+ +  +++k+ +  +k+++++++++ +++  +  +p       
  KKY20872.1 376 DSED-----AKDGDEMETDKSADRIEQPQSsEQSKQLETVPKAQPTIESQQPESTHTA--QPpedkekP 437
                 2222.....2222333333333333333331112233333444555444222222222..111122220 PP

>> YL1_C  YL1 nuclear protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   2.7   9.9e-17   8.9e-13       1      29 []     645     673 ..     645     673 .. 0.96

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 9.9e-17
       YL1_C   1 yCdITGlpAkYrDPkTgLpYanveaykvI 29 
                 +C IT +pA+YrDP Tg+pYan++ayk I
  KKY20872.1 645 LCYITSKPARYRDPETGIPYANAYAYKKI 673
                 6**************************77 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1525  (0.0850577); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.36s 00:00:01.24 Elapsed: 00:00:00.55
# Mc/sec: 4322.09
//
Query:       KKY20873.1  [L=1093]
Description: putative rna binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-27   91.2   0.0    8.9e-05   22.0   0.0    6.0  6  PUF       Pumilio-family RNA binding repeat
    4.8e-11   42.3   0.0    1.2e-10   41.0   0.0    1.7  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> PUF  Pumilio-family RNA binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0     1e-08   8.9e-05       2      35 .]     598     631 ..     597     631 .. 0.91
   2 !   12.8   0.0     8e-06     0.072       2      33 ..     634     665 ..     633     668 .. 0.83
   3 !   21.7   0.0   1.2e-08   0.00011       3      34 ..     672     702 ..     670     703 .. 0.82
   4 !   13.3   0.0   5.6e-06      0.05       6      35 .]     710     740 ..     707     740 .. 0.91
   5 !   13.5   0.0   4.8e-06     0.043       5      33 ..     747     775 ..     745     777 .. 0.90
   6 ?   -2.7   0.0      0.69   6.2e+03       3      14 ..     782     793 ..     781     794 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1e-08
                 HGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQkllehateeqkklil 35 
                 +++++ +L++d  Gn vvQkl+e ++ee + ++l
  KKY20873.1 598 MLPEIAELASDYLGNTVVQKLFEFCSEEVRGRML 631
                 678999**********************988775 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 8e-06
                 HGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQkllehateeqkkl 33 
                 i ++l ++ ++++G+++ Qk++++ +e+++++
  KKY20873.1 634 IAPHLAEIGVHKNGTWAAQKIIDVVKEPDQMS 665
                 6789999*****************77776654 PP

  == domain 3  score: 21.7 bits;  conditional E-value: 1.2e-08
                 GGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHH CS
         PUF   3 kgnlvqLstdqyGnyvvQkllehateeqkkli 34 
                 +++ v L  dqyGnyv+Q++l  ++ +  ++i
  KKY20873.1 672 RPYTVPLFLDQYGNYVLQCCLR-FGAPYNDFI 702
                 68999999*************9.676666666 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 5.6e-06
                 HHHHHTSTTHHHHHHHHHHH.SCHHHHHHHH CS
         PUF   6 lvqLstdqyGnyvvQklleh.ateeqkklil 35 
                  +++++ ++G+++++ +le  + +++++++l
  KKY20873.1 710 MWEIAQGRFGARAMRACLEShHATKDQQRML 740
                 689*****************99999999876 PP

  == domain 5  score: 13.5 bits;  conditional E-value: 4.8e-06
                 GHHHHHTSTTHHHHHHHHHHHSCHHHHHH CS
         PUF   5 nlvqLstdqyGnyvvQkllehateeqkkl 33 
                 + vqL+t+ +G+ ++ ++l+++t + ++ 
  KKY20873.1 747 HSVQLATNTNGALLLTWFLDTCTFPRRRT 775
                 789*******************9988775 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 0.69
                 GGGHHHHHTSTT CS
         PUF   3 kgnlvqLstdqy 14 
                  ++lv L+t++ 
  KKY20873.1 782 VPYLVHLCTHKV 793
                 589999****96 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   1.4e-14   1.2e-10       1      64 [.     387     445 ..     387     447 .. 0.97

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 1.4e-14
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkkl 64 
                 l++g +p ++t   L ++F+ +Gpi+s ++ +     +k+++fV+Fe  e+A +A++ lngk++
  KKY20873.1 387 LWIGSIPVSTTVTSLDAIFGRYGPIESTRVLT-----HKNCGFVNFERVESAVQAKALLNGKEI 445
                 78******************************.....6***********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1093 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.51
# Mc/sec: 6489.22
//
Query:       KKY20874.1  [L=563]
Description: putative mfs multidrug [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-43  147.2  33.7    5.8e-43  147.2  33.7    1.9  2  MFS_1     Major Facilitator Superfamily
      1e-09   37.8   8.8      1e-09   37.8   8.8    2.4  3  Sugar_tr  Sugar (and other) transporter
    0.00083   17.8   3.6    0.00083   17.8   3.6    2.8  4  OATP      Organic Anion Transporter Polypeptide (OATP) family
  ------ inclusion threshold ------
      0.033   13.8   0.6       0.12   12.0   0.6    1.9  1  Saf_2TM   SAVED-fused 2TM effector domain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.2  33.7   1.3e-46   5.8e-43       4     351 ..     132     512 ..     127     514 .. 0.78
   2 ?    0.5   2.8      0.05   2.2e+02     121     173 ..     497     549 ..     493     562 .. 0.74

  Alignments for each domain:
  == domain 1  score: 147.2 bits;  conditional E-value: 1.3e-46
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlgaga 101
                 +++ +++a+si+++a  + ++e+++is  +  l ++l+ lg++++ l++G++s+ +Gr + l++g+++fa++  +++ +a+++ +++++r+l G+++++
  KKY20874.1 132 MTLTITFASSIFSTAT-IRVSEEYHISNEVSILGTSLFVLGFCFGPLVWGPFSEIYGRMPPLFAGFAIFAIF-QIPVaVAQNVETIMLSRFLGGFFGCS 228
                 3444455555555555.59*****************************************************.66663447766*************** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeee........... 188
                  +++++ ++ad + + +rg ai++++a++ +G++ gp++gg+++ s+lgWr++ +i  i+++ ++ + l+++pe+  ++  ++ + ++           
  KKY20874.1 229 PLAIVGGALADFWDPVDRGVAIAIFAAATFIGPVAGPIVGGFVTqSHLGWRWTAWITLIMAAAFGTISLIVIPETSGPKLLQRRAAQLrqetknwalha 327
                 ****************************************************************99988888888888888888888788887777777 PP

       MFS_1 189 ....kgtgpaplvp.....awkallkdpvlw.illialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrlsdrlgr 273
                     ++  p+ lv+     ++ +l+k p l+ i ++ +++ + ++++++   p+ +qe++g++     l  +g++++++  +++++++  +r++++l +
  KKY20874.1 328 kadeQRLNPSDLVTryltrPFIMLFKEPILMlITIYLAFIYG-ILYLFFEAYPITFQEQRGWNegvgQLPFIGITIGVVIGATIVSFVTKTRFARKLRK 425
                 766655555555555555566666666655333333333333.3333555555557*******999877777777888888877788888888888444 PP

       MFS_1 274 ......rrrlllallllllaalglallavtssavllllvlvl....iGfglgfv.fpsllalasdlappeeagtasglfntagslggal 351
                       + rl  ++l+++++ +gl+++a+tss+++++++ v+    iG+g++++ +  l+++++ ++   +a +a++ +++++sl+ga 
  KKY20874.1 426 hgrvipEERLPPMILGAVILPAGLFWFAWTSSPHITWVPQVIagipIGCGVFMIfMQGLNYIIDCYL--WHANSAIAGNTLIRSLAGAG 512
                 444666********************************77777777888555552666666666666..77778888888888888875 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.05
       MFS_1 121 raigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllp 173
                 +ai+  ++  sl+ +  pl++  +++ lg  ++  +la++++ ++ + +l++ 
  KKY20874.1 497 SAIAGNTLIRSLAGAGFPLFANQMYAKLGVDWATSLLAFLCVAMIPVPILFYI 549
                 56666677777777777999999999999999999999999998776666664 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   8.8   2.3e-13     1e-09      33     317 ..     147     422 ..     123     430 .. 0.77
   2 ?   -0.5   0.4     0.094   4.2e+02      77     120 ..     436     476 ..     432     482 .. 0.86
   3 ?   -2.3   0.8      0.34   1.5e+03     391     438 ..     498     544 ..     495     550 .. 0.76

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 2.3e-13
                 TT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS CS
    Sugar_tr  33 glsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiA 131
                 +  +s++ +  s+  s l +s+f++G  +G l+ g++++++GR + l ++ ++f i ++  a+a+   +ve ++++R+l G++     ++v   ++ + 
  KKY20874.1 147 TIRVSEEYHI-SNEVSILGTSLFVLGFCFGPLVWGPFSEIYGRMPPLFAGFAIFAIFQIPVAVAQ---NVETIMLSRFLGGFFGCSPLAIVGGALADFW 241
                 3333333333.788999************************************************...**************99999999999999*** PP

                 -SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHH.HHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHH CS
    Sugar_tr 132 pkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpal.lllilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekd 229
                  +  Rg  + ++  a+ +G + + i+g ++ +++   gwr++ +++l++a  +  i l+++PE+      k  + +a +  ++ +++++  ++ ++  +
  KKY20874.1 242 DPVDRGVAIAIFAAATFIGPVAGPIVGGFVTQSHL--GWRWTAWITLIMAAaFGTISLIVIPETS---GPKLLQRRAAQLRQETKNWALHAKADEQRLN 335
                 **************************999988777..9*******99987615678889*****2...2222222444444444444333333333333 PP

                 HHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHH..HTTTHHHHSS-THH...HHHHHHHHHHHHHHHHHHHHHHHHS-SH CS
    Sugar_tr 230 sleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimy..ysptifenlglsks...llvtiivgvvnfvatfvaiflvdrfGRR 317
                   +   ++    +++++     + ++l+ + +  + +  Gi ++++  y+ t+ e+ g ++    l + +i++ v + at+v++ +  rf R+
  KKY20874.1 336 PSDLV-TR--YLTRPFIML--FKEPILMLITIY-LAFIYGILYLFFeaYPITFQEQRGWNEGvgqLPFIGITIGVVIGATIVSFVTKTRFARK 422
                 33333.22..233334444..335777777664.55788999888766999999*****999999889999999999******9999999998 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.094
                 HHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHH CS
    Sugar_tr  77 kslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlas 120
                 + ++ +av++ +g +  a++    s  +  v +v++Gi++G+  
  KKY20874.1 436 PPMILGAVILPAGLFWFAWTS---SPHITWVPQVIAGIPIGCGV 476
                 678999999999999999999...9999999********99875 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.34
                 HHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS- CS
    Sugar_tr 391 avavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvp 438
                 a a n l+  l +  fp +++++  ++ ++ +a  +++f+ + ++ vp
  KKY20874.1 498 AIAGNTLIRSLAGAGFPLFANQMY-AKLGVDWATSLLAFLCVAMIPVP 544
                 556677777788888888888888.88888888888888877777666 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.6       0.1   4.7e+02     465     518 ..     127     180 ..     118     185 .. 0.63
   2 !   17.8   3.6   1.8e-07   0.00083     134     318 ..     214     376 ..     203     425 .. 0.67
   3 ?   -3.1   0.2      0.39   1.7e+03     136     182 ..     466     512 ..     459     532 .. 0.67
   4 ?   -3.1   0.2      0.39   1.7e+03     503     517 ..     533     547 ..     518     549 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.1
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 465 illflvsflgalgrvpallvilRcVkkedksfalGlqlllirllgliPgPiifG 518
                 ill+ +++++ +++    ++++R+ ++ + s  +++  + + +lg+  gP+++G
  KKY20874.1 127 ILLATMTLTITFASSIFSTATIRVSEEYHISNEVSILGTSLFVLGFCFGPLVWG 180
                 223333332222222233456688888888888999988888999999999888 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 1.8e-07
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 134 lfflaqlllGi.GatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllklyvdidseisltpkdprWvgaWWlgflilgvllllaai 231
                  ++l+ +l G+ G +p+  +G + + D+ ++ +  + ++i+ a++++Gp+ G ++G+++++ +  +                 W  ++ l +++++  i
  KKY20874.1 214 TIMLSRFLGGFfGCSPLAIVGGA-LADFWDPVDRGVAIAIFAAATFIGPVAGPIVGGFVTQSHLGW----------------RWTAWITLIMAAAFGTI 295
                 78999999995488899999987.899******************************999966555................46677777777777777 PP

                 xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 232 plffFPke.lpkkkeerakkkseeesaekkeekkkkeksksseeeelkslkdfpkalkrllknpifllvilssvfeillvaGfitFlp 318
                  l++ P++  pk  ++ra++ ++e +++ + + k +e+  + +      ++ + + + +l+k+pi++l+++  +f   ++  ++ F  
  KKY20874.1 296 SLIVIPETsGPKLLQRRAAQLRQE-TKNWALHAKADEQRLNPS---DLVTRYLTRPFIMLFKEPILMLITIYLAF---IYGILYLFFE 376
                 777788884333333333333333.322222222222233322...35678999**************9987444...3333344444 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.39
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 136 flaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpa 182
                 ++a + +G+G  +i+  G+ Yi D    +  +   g +   ++ G  
  KKY20874.1 466 VIAGIPIGCGVFMIFMQGLNYIIDCYLWHANSAIAGNTLIRSLAGAG 512
                 56667788888888888999988876666666666666555555555 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 0.39
                 xxxxxxxxxxxxxxx RF
        OATP 503 llirllgliPgPiif 517
                 l + ++++iP Pi+f
  KKY20874.1 533 LAFLCVAMIPVPILF 547
                 445578999999998 PP

>> Saf_2TM  SAVED-fused 2TM effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.6   2.7e-05      0.12      27      83 ..     122     181 ..     116     188 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.7e-05
     Saf_2TM  27 tigvalllailgtdwalkia.lklaggslevsfssseipeivlaiilvigvll..ivvGa 83 
                 ++ v++lla++  ++ ++++ + +a  ++++++ +s+ ++i+ + ++v+g+++  +v+G 
  KKY20874.1 122 KWTVTILLATMTLTITFASSiFSTATIRVSEEYHISNEVSILGTSLFVLGFCFgpLVWGP 181
                 6889********988887651566699************************995566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 3722.82
//
Query:       KKY20875.1  [L=587]
Description: hypothetical protein UCRPC4_g04036 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       942  (0.0525406); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 4402.86
//
Query:       KKY20876.1  [L=730]
Description: hypothetical protein UCRPC4_g04037 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.8    8.2  11.1         27    5.1   4.4    3.8  4  DUF4611   Domain of unknown function (DUF4611)


Domain annotation for each model (and alignments):
>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1    0.0021        37      48      94 ..      70     116 ..      55     118 .. 0.81
   2 ?   -0.7   0.0     0.091   1.6e+03      31      60 ..     311     340 ..     297     346 .. 0.76
   3 ?   -2.5   0.0      0.33     6e+03       3      24 ..     495     516 ..     494     525 .. 0.80
   4 ?    5.1   4.4    0.0015        27      60      77 ..     710     727 ..     670     730 .] 0.63

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0021
     DUF4611  48 tlveqeaqddvaaagdeeeegededdeeeekniknktksdePpaKrt 94 
                 tl   e+   + ++  e + ge  d+++  + +  +  +d PpaKr 
  KKY20876.1  70 TLSMGETIRAFLNKSTEPLVGESPDQASRASPTVSRVANDSPPAKRK 116
                 555556666666777788889999999999***************96 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.091
     DUF4611  31 llsgvaqlreevsellstlveqeaqddvaa 60 
                 +++  + + +++ +ll++l + e++++v +
  KKY20876.1 311 IMVRYNYMSQDIQNLLDELKKLEQSGKVGR 340
                 556667789999999999999998887655 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.33
     DUF4611   3 gelvgrdGqkqrlrvkceapge 24 
                 ge+ + +G++ +l  + e+ ++
  KKY20876.1 495 GEYNFNEGKQIELNPSFEGTDD 516
                 89******99999888888766 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.0015
     DUF4611  60 aagdeeeegededdeeee 77 
                 +++deeee+e+e++eeee
  KKY20876.1 710 EDEDEEEEEEEEEEEEEE 727
                 233333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1116  (0.0622455); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.24s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 4858.83
//
Query:       KKY20877.1  [L=251]
Description: putative phosphoglycerate mutase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-13   50.6   0.0    9.1e-13   48.3   0.0    1.9  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   5.1e-17   9.1e-13       1     160 [.       5     192 ..       5     207 .. 0.75

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 5.1e-17
                 EEEEE---BTT.................B--....TT----B-HHHHHHHHHHHHHHTT.S---EE....EE-SSHHHHHHHHHHHHCTT...--EEE- CS
  His_Phos_1   1 lyLvRHGetew.................naegrlqgrtdvpLteeGreqAealaerlag.epidai....ysSplkRarqTaeliaealg...lpveld 74 
                 l+L+RHGe  +                   + r    +d+ Lte+Greq  +l e l++  pi++     ++Sp+ R+++T  + ++ l    +p+e d
  KKY20877.1   5 LILIRHGEAFHnstdksssgvnlprgcaDIAIRNHALHDPALTELGREQCSELEENLREtLPIAQEveliITSPFLRTIETTLIGLDWLVqrgVPIEPD 103
                 79*********666666666655555542232334456666******************95555545566************88776444555****** PP

                 GGGS----GGGT.T-B.HHHHHH..HSHHHHHHHHH-GGG-B......S-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT CS
  His_Phos_1  75 egLrEidfGdwe.glttaeiaeeypeeleawlrdpadvrppg......gEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllg 160
                 + ++E +   ++ g   a +   +p+     l+    v+p++        +  +v++R + +l++l +r e+  ++vVsH g++r+++++ l 
  KKY20877.1 104 ALWQENSAKPCDtGSDAAHLSTLFPHIDFSKLDP---VYPSKaddtiyAFTKSAVVRRGEMCLQNLYNRKEKV-IAVVSHSGFLRTAISQTLY 192
                 *********9995555555555555544433333...333334558888899******************976.**************99874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.53
# Mc/sec: 1414.21
//
Query:       KKY20878.1  [L=216]
Description: putative cell division control protein 42 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-52  177.0   0.0    2.9e-52  176.5   0.0    1.2  1  Ras       Ras family
    2.2e-18   66.6   0.0    3.2e-18   66.1   0.0    1.2  1  Roc       Ras of Complex, Roc, domain of DAPkinase
    6.7e-09   35.4   0.0    8.9e-09   35.0   0.0    1.1  1  Arf       ADP-ribosylation factor family


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.5   0.0   4.8e-56   2.9e-52       2     159 ..      31     200 ..      30     203 .. 0.97

  Alignments for each domain:
  == domain 1  score: 176.5 bits;  conditional E-value: 4.8e-56
                 EEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHH.HHHHHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvk.kwveeikr 99 
                 +v+vGd+avGKt+ll++++++kF++ey +T+ +d+y  ++++ ++ ++l ++DTAGqe++++lr+l+y +++++l+++++ts +sfenv+ kw+ e+++
  KKY20878.1  31 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVReKWFPEVHH 128
                 89*****************************.**********************************************************9******** PP

                 HSTTTSEEEEEEETTTGGG............G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDlee............kravsteegeelakelg.lkfletSAktnenveeafeellre 159
                 +++  vp+++vG+++Dl++             + v++e+ge++akelg +k++e+SA t+++++++f+e++ +
  KKY20878.1 129 HCP-GVPCLIVGTQTDLRDdqsvreklakqkMQPVRREDGERMAKELGaVKYVECSALTQYKLKDVFDEAIVA 200
                 ***.7************************98899*********************************998765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   5.4e-22   3.2e-18       2     119 ..      31     143 ..      30     144 .. 0.87

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 5.4e-22
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCH.H CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenl.k 96 
                  v+vGd++vGKt+ll +++++kf +++ +t+  +++ + +  i g   d   + ++l ++DtaGqe+++ l+pl + + +++++++      s+en+ +
  KKY20878.1  31 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM--I-G---D---EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSvtsPASFENVrE 120
                 689****************************999876533..2.2...2...3589****************************998543446788747 PP

                 HHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  97 eWlkelkkvagkspvilvgnkiD 119
                 +W+ e++++++  p+++vg+++D
  KKY20878.1 121 KWFPEVHHHCPGVPCLIVGTQTD 143
                 8********************99 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   1.5e-12   8.9e-09      10     169 ..      24     195 ..      15     200 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 1.5e-12
                 T.TTEEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEE.EEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHH CS
         Arf  10 lkkkelrilllGLDnaGKtTilkklkleelvt.tvPTigfnve.elei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeL 104
                  ++ke+r++++G  + GKt +l  ++++++ +  vPT+  n   +++i  + +++ ++D  Gqe   +l    +++td+ + +  ++    +e+ +e+ 
  KKY20878.1  24 RANKEVRCVVVGDGAVGKTCLLISYTTNKFPSeYVPTVFDNYAvTVMIgdEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVREKW 122
                 349*********9999************996549***988864377775456999**********9999999***********************9987 PP

                 HHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSS.........SSSSEEEEEEBTTTTBTHHHHHH CS
         Arf 105 kalleeeelkevallvlaNKqDlpealseeelrellgleelk.........gkrkleiqkcsavkgeglkegle 169
                    + +++   v+ l+++ + Dl+++ s +e  ++ +++ ++             ++ ++csa+++ +lk+ ++
  KKY20878.1 123 FPEV-HHHCPGVPCLIVGTQTDLRDDQSVREKLAKQKMQPVRredgermakELGAVKYVECSALTQYKLKDVFD 195
                 6655.45688****************999998888888887766655543333456677888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.53
# Mc/sec: 1218.31
//
Query:       KKY20879.1  [L=412]
Description: putative curved dna-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-10   41.1   0.0      4e-10   39.7   0.0    1.6  1  Peptidase_M24  Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   2.2e-14     4e-10       2     190 ..      19     246 ..      18     263 .. 0.74

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 2.2e-14
                    HHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTT..........TCEESSSSEEEEGGGGGSTTTBC.......SSSB--TTEEEEEE CS
  Peptidase_M24   2 lirkaariasaaleavleaikpgvterelaaeieattlkrhg..........arglafppivasgenaavlhytp.......ndrvlkegdlvlid 80 
                    +++ aa+i++++leav  ++ +g +  el+++ ++  l + +          a+g+++p  + +++ + v  ytp         ++lk+g++v+i 
     KKY20879.1  19 KYKTAAQISHKVLEAVSGWCVEGAKIIELCEKGDKL-LDE-EvakvykgkkiAKGISHP--TTVSPSSYVTPYTPlvsdaeeAATTLKAGEPVKIQ 110
                    6899******************************76.533.33566666889*******..8999999999****99766544555********** PP

                    EEEEETTEEEEEEEEEECS.SGSHH....HHHHHHHHHHHHHHHHHC-ST.T..................SBHHHHHHHHHHHHHHTTBCCGBSSC CS
  Peptidase_M24  81 agaeydgyasDitrTvlvG.kftpe....qrelyeavleaqeaaikavkp.G..................vtlseidaaarevlesaglakffphg 152
                    +ga++dg+ + ++ T++vG + + e    q++l+ a+  a e +i+++ p G                  ++ ++i++  ++v++s+g+   + + 
     KKY20879.1 111 LGAQIDGFGTIVCDTIIVGaD-QTElssrQADLLLATYYANELLIRLLIPpGllaggseeekkkaaaekpASQAKINNLLEKVAKSYGV-NLVQNT 204
                    *******************53.3323445999**********99996655485555555555555555555566666666666666666.666777 PP

                    SEEEESS.SSSEEEEEESS...STTCSSB--TTBEEEEEEEE CS
  Peptidase_M24 153 lGHgvGl.evhdegpsvsr...esndgrkleeGmvftiEpgi 190
                    + +   + e+ ++  ++       + +   e G+v+ iE g+
     KKY20879.1 205 TCWLFERnEIEGKKKIILApteGMKGEGSAEVGEVWGIELGM 246
                    777777667776634433233322245667777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1309  (0.0730102); expected 358.6 (0.02)
Passed bias filter:                      711  (0.0396564); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:00.54
# Mc/sec: 2281.88
//
Query:       KKY20880.1  [L=1193]
Description: putative phd finger domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.5e-16   57.4  20.6    2.5e-10   40.1   8.9    2.5  2  PHD           PHD-finger
     0.0027   17.2   3.7     0.0027   17.2   3.7    3.5  3  PHD_2         PHD-finger
  ------ inclusion threshold ------
      0.089   12.4   9.0        1.2    8.8   2.8    2.6  2  zf-PHD-like   PHD/FYVE-zinc-finger like domain
        7.5    7.0  18.4        2.6    8.4   1.2    2.8  3  C1_2          C1 domain


Domain annotation for each model (and alignments):
>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   8.9   5.5e-14   2.5e-10       2      51 ..     743     786 ..     742     787 .. 0.95
   2 !   22.8   3.8   1.4e-08   6.2e-05       2      47 ..     873     924 ..     872     925 .. 0.83

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 5.5e-14
                 BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 C++C++     +el++CdgC ++fH +C++ppl+   +peg+w+C++C+ 
  KKY20880.1 743 CSACGG----TGELICCDGCPHAFHFSCVDPPLK--AIPEGQWYCSRCNA 786
                 9*****....9**********************9..9999********85 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 1.4e-08
                 BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSS......TBSST CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpeg......ewlCe 47 
                 C+ C++ + +++elv+Cd C    H++C++ pl   ++          w C+
  KKY20880.1 873 CHRCQRLASNDRELVSCDYCPAKWHMDCVDNPLAIPPRRRAhdkagsTWKCP 924
                 999***8889********************9987555544466677899997 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   3.7     6e-07    0.0027       2      35 ..     750     784 ..     749     785 .. 0.83
   2 ?   -0.6   0.1      0.23     1e+03       4      11 ..     870     877 ..     867     877 .. 0.79
   3 !    4.6   0.3    0.0054        24       4      18 ..     886     900 ..     884     902 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 6e-07
       PHD_2   2 npllsCdkCsvaVHasCY..GvskesdgeeWlCrrC 35 
                   l+ Cd+C  a+H sC   +++ +++g +W+C+rC
  KKY20880.1 750 GELICCDGCPHAFHFSCVdpPLKAIPEG-QWYCSRC 784
                 679**************83356777777.7****** PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.23
       PHD_2   4 llsCdkCs 11 
                 +l+C +C+
  KKY20880.1 870 ILVCHRCQ 877
                 78888885 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.0054
       PHD_2   4 llsCdkCsvaVHasC 18 
                 l+sCd C    H++C
  KKY20880.1 886 LVSCDYCPAKWHMDC 900
                 8************** PP

>> zf-PHD-like  PHD/FYVE-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.8   0.00026       1.2       2      31 ..     744     768 ..     741     772 .. 0.81
   2 ?    6.5   0.4    0.0013       5.8       1      31 [.     873     902 ..     873     908 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00026
  zf-PHD-like   2 dtCaeskdeekgqlvyCqGCslsyhkaClG 31 
                  ++C+      +g+l++C GC +++h +C+ 
   KKY20880.1 744 SACG-----GTGELICCDGCPHAFHFSCVD 768
                  4443.....458****************85 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0013
  zf-PHD-like   1 CdtCaeskdeekgqlvyCqGCslsyhkaClG 31 
                  C+ C+  + ++  +lv C  C + +h  C+ 
   KKY20880.1 873 CHRCQRLA-SNDRELVSCDYCPAKWHMDCVD 902
                  999*9987.78889***************86 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.6    0.0017       7.7      12      47 .]     734     767 ..     725     767 .. 0.84
   2 ?   -2.7   0.1       1.7   7.7e+03      33      39 ..     779     785 ..     774     788 .. 0.68
   3 ?    8.4   1.2   0.00058       2.6      17      47 .]     869     901 ..     860     901 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0017
        C1_2  12 gedssesfnCsaCgrkidgffYsCseCdfslhvrCa 47 
                 +ed +++ +CsaCg ++  +   C+ C  ++h++C+
  KKY20880.1 734 DEDTDNDEECSACGGTG--ELICCDGCPHAFHFSCV 767
                 5788999********94..5567777*********6 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.7
        C1_2  33 YsCseCd 39 
                  +Cs+C+
  KKY20880.1 779 WYCSRCN 785
                 4677776 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00058
        C1_2  17 esfnCsaCgrk.idgff.YsCseCdfslhvrCa 47 
                 +   C+ C+r  +++ +  sC+ C  + h++C+
  KKY20880.1 869 GILVCHRCQRLaSNDRElVSCDYCPAKWHMDCV 901
                 5688*******5555559**************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       993  (0.0553851); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.53
# Mc/sec: 6755.47
//
Query:       KKY20881.1  [L=447]
Description: putative mrna-capping enzyme subunit alpha [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-53  181.7   0.8    1.8e-53  181.3   0.8    1.2  1  mRNA_cap_enzyme  mRNA capping enzyme, catalytic domain
    2.2e-28   99.0   0.0    4.3e-28   98.1   0.0    1.5  1  mRNA_cap_C       mRNA capping enzyme, C-terminal domain
      1e-09   38.4   0.2    6.3e-07   29.3   0.3    2.3  2  DNA_ligase_A_M   ATP dependent DNA ligase domain
     0.0018   18.6   0.0      0.003   17.9   0.0    1.4  1  RNA_ligase       RNA ligase
     0.0079   15.5   0.4       0.62    9.2   0.0    2.2  2  Beta-lactamase   Beta-lactamase


Domain annotation for each model (and alignments):
>> mRNA_cap_enzyme  mRNA capping enzyme, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.3   0.8     5e-57   1.8e-53       1     195 []      43     240 ..      43     240 .. 0.96

  Alignments for each domain:
  == domain 1  score: 181.3 bits;  conditional E-value: 5e-57
                      EEEE--TTHHHHHHHS-EEEEEEESSEEEEEEEEECT...EEEEEEETTS-EEEESSST-BTTSSSSTCTSBGGSEEEEEEEEEEECTTCEEEE CS
  mRNA_cap_enzyme   1 qPvSlerenlekLkqkkYvvseKaDGiRylmllteee...egvylidRenevyrvenlrfprekdkeklekvldetllDgElvidkveekkkel 91 
                      qPvS+   ++  L++++Y+v eK+DGiR+lm+lt+e    e  ylidR+n++y v+ l+fp   d     k++ +tllDgElv d++++ k+el
       KKY20881.1  43 QPVSFAARHIAELTRQDYYVMEKTDGIRFLMYLTREGpdkEIHYLIDRKNDYYYVPDLHFPAPDD-PTYAKFHADTLLDGELVRDTYPNGKSEL 135
                      8*********************************998787778*******************997.4469************************ PP

                      EEEEEEEEEETTEEGTTSBHHHHHHHHHHHTHHHHHHHHHTTCCCCTTSSSEEEE--EEETTHHHHHHHHCCCCCTT..STEEEEEEEESSSB- CS
  mRNA_cap_enzyme  92 ryliyDivaingvtvaeeplskRleilkkelikprneekktglletdkepfsvrlKefilleavaklleekfikkls..hesDGLIfqpvkepy 183
                      +yl++D+++++g++++++ l+kRl+++k  + kp+++  k+   e +  pf v  K   +++ v+  +++++i++++  h +DGLIf++  +py
       KKY20881.1 136 KYLVFDCLVMDGKSLMQRTLDKRLAYFKEMILKPYKQMYKEMPQEIQYRPFAVEDKTTQFSYGVEM-MFKEVIPRVKklHGNDGLIFTCRSTPY 228
                      *************************************999999999999***************99.9999**9996669************** PP

                      -SEEEEEEEEE- CS
  mRNA_cap_enzyme 184 vagrdsdllKwK 195
                      + g+d+++lKwK
       KKY20881.1 229 KIGTDEHILKWK 240
                      ***********9 PP

>> mRNA_cap_C  mRNA capping enzyme, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.0   1.2e-31   4.3e-28       1     108 []     244     386 ..     244     386 .. 0.94

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 1.2e-31
                 GSEEEEEEEE..............SSS--TTS--EE.EEEEEES..TEEEEEEEB---HH...HHHHHHHT-S--TTEEEEEEE-TTS........... CS
  mRNA_cap_C   1 eNtvDFklel..............ekyedydakpkf.ellvleg..ekyekfaelylseeekeeweelkslneeldgkIvEcsldeek........... 71 
                 eNt+DF l++              +++ dy+a p++ ellv++g  ++y+ +++lyl+ +   ew+ lk +n++l++ +vEc+l+  +           
  KKY20881.1 244 ENTIDFVLSIrwqefdpdpsdpdqSPVIDYEAFPRAfELLVYHGgnDDYRPWGNLYLTPK---EWNDLKVMNKPLQDAVVECWLEPASsktfsphnngt 339
                 7**********************9999*******988*******9999**********99...**********************55335788888999 PP

                 ..........-EEEEEE-TT-SS--BHHHHHHHHHHHHTS--HHHHH CS
  mRNA_cap_C  72 ..........rWkllriRdDKsepNhisvvekvleSIednvteeeLl 108
                           rW+++r+R+DK ++Nhis+ve+v+eSI+d+v++++L+
  KKY20881.1 340 ytngnqahpqRWRFHRLREDKVHANHISTVESVMESIQDAVSQDDLI 386
                 99999888878**********************************97 PP

>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0012       4.3      11      82 ..      49     125 ..      42     132 .. 0.69
   2 !   29.3   0.3   1.7e-10   6.3e-07     112     204 .]     132     240 ..     125     240 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0012
                     HHHHHHTTTSEEEEEEEESSEE..EEEEE..ETTEEEEEETTS-B-GG....GCHHHHHHHHHHBSTTESEEEEEEEEEE CS
  DNA_ligase_A_M  11 ekalkkleekafivEiKyDGeR..aqvhk..egdkvklfSRrlkdita....akpelvkalkeafkkdeksvilDGElva 82 
                        + +l++++ +v +K DG R  + + +   ++++ ++  r++d+ +    ++p+    + + f +   + +lDGElv 
      KKY20881.1  49 ARHIAELTRQDYYVMEKTDGIRflMYLTRegPDKEIHYLIDRKNDYYYvpdlHFPAPDDPTYAKFHA---DTLLDGELVR 125
                     556778889999**********775555524567888888888888886766666554444444444...699****996 PP

  == domain 2  score: 29.3 bits;  conditional E-value: 1.7e-10
                     HSEEEEEEEEEEEETTEEHTTSCHHHHHHHHHHHB............--BTTTEEE--EEEESSHHHHHHHHHHHHH.....TTECEEEEEETT- CS
  DNA_ligase_A_M 112 eaelclfvFDiLyldgesltdeplkeRrklLeeil............kesedrvelaeslevkdveeleelleeais.....eglEGlvvKnpds 189
                     ++el ++vFD+L++dg+sl++++l++R ++ +e++            +e++ r  ++e ++++ +  +e +++e+i      +g +Gl+    + 
      KKY20881.1 132 KSELKYLVFDCLVMDGKSLMQRTLDKRLAYFKEMIlkpykqmykempQEIQYRPFAVEDKTTQFSYGVEMMFKEVIPrvkklHGNDGLIFTCRST 226
                     57899******************************999999997777777777777888888888899999999985333335889999999999 PP

                     CC-TTCEEEEEEEEE CS
  DNA_ligase_A_M 190 kYepgkrsknwlKvK 204
                     +Y++g   ++ lK K
      KKY20881.1 227 PYKIGTD-EHILKWK 240
                     9999988.8888877 PP

>> RNA_ligase  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   8.3e-07     0.003       2     161 .]      59     240 ..      58     240 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 8.3e-07
                 EEEEEEE-SSEEEEEEEETT......EEEEETTCEBCTTTHHHHHHTHHHHHHHHHHHHH......ECCEEEEEEEES.SS..TTSS.EEEEEEEEEEE CS
  RNA_ligase   2 evvvtEKlDGtnfriylvke......vgvasRsqilpfgeekfkefkrwaaalrkklkekla....neelilyGElighsikygglpkefyvFdifdir 90 
                  ++v EK DG +f +yl++e       +++ R++++           +++ +l+++ +++ +    + +  l GEl+ ++++ g+++ +++vFd+++++
  KKY20881.1  59 DYYVMEKTDGIRFLMYLTREgpdkeiHYLIDRKNDY-----------YYVPDLHFPAPDDPTyakfHADTLLDGELVRDTYPNGKSELKYLVFDCLVMD 146
                 6899**************744555565556666665...........555555553333333444446799*******888877777799******998 PP

                 .CTT..............BECE--HHHH.HHHHHCCTB..EEEEE.SSHHHHHCCC..............H.HHHTC--EEEEEESSSSBE.TTEBSEE CS
  RNA_ligase  91 .dke..............eqrylspdev.ealakglgtvpvlyegkflaaeellel.............ll.skgnkrEGlVikpeselyk.nkgraif 158
                  +                e    +++++ +++ +++++ p++ e k++       +             +  +k +   Gl++ + s+ yk  ++ +i+
  KKY20881.1 147 gK-SlmqrtldkrlayfkEMILKPYKQMyKEMPQEIQYRPFAVEDKTT-------QfsygvemmfkeviPRvKKLHGNDGLIFTCRSTPYKiGTDEHIL 237
                 43.344444444444443222223333333333333233333332222.......13555555677665224788888999999999999999999999 PP

                 EEE CS
  RNA_ligase 159 Kvk 161
                 K+k
  KKY20881.1 238 KWK 240
                 987 PP

>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00017      0.62     158     204 ..      13      60 ..       6      68 .. 0.83
   2 !    4.1   0.2    0.0062        22     195     289 ..     337     430 ..     313     436 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00017
                     HHH.TSHHHHHHHHHTTTTTTSTTEESSTTGGGGGGBEEEEEEETCEE CS
  Beta-lactamase 158 kvt.grsleqllreeilrpLgmkdtelgppesgdprdaagytgngpea 204
                     +++ + +l+  +r+e++r Lg+++t +  +++  ++ ++ ++ +++++
      KKY20881.1  13 GIKaDDDLAHMFRQEVARLLGRTNTNFPGAQPVSFAARHIAELTRQDY 60 
                     5554478999************************99999998777665 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0062
                     EEEEEETCEEECSCETTHHHHC..TTTBEEEEHHHHHHHH.HHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEECECSSEEEEECCHTEEEEE CS
  Beta-lactamase 195 agytgngpearappanlpaeae..gagglistardlarfl.glalegglllsaetlaqltaklssgttrpagiraglglGwvladktgapgtfgh 286
                     +g ++ng++a++++  +++ +e   +++ ist+++++  + + + ++ l+++a t + ++ ++++   ++++ + g    ++ +     +++f+h
      KKY20881.1 337 NGTYTNGNQAHPQRWRFHRLREdkVHANHISTVESVMESIqDAVSQDDLISAAPTIRDAWKRRQTESAAGGRPASGNAPALMQH-----QQSFQH 426
                     333344444455555555555588899*************86777777888888888888888888888888888778888888.....667889 PP

                     EE.S CS
  Beta-lactamase 287 tG.g 289
                     +G g
      KKY20881.1 427 QGhG 430
                     9952 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 2723.79
//
Query:       KKY20882.1  [L=1403]
Description: putative sensory transduction histidine kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-21   75.3   0.5      1e-20   74.0   0.5    1.7  1  Response_reg  Response regulator receiver domain
      1e-20   74.3   0.0    1.9e-20   73.4   0.0    1.5  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    3.2e-09   36.7   0.4    9.5e-09   35.2   0.4    1.9  1  HisKA         His Kinase A (phospho-acceptor) domain
    7.7e-07   29.3   0.0     0.0015   18.8   0.0    2.7  2  PAS_4         PAS fold
    1.1e-06   28.6   0.0    5.4e-05   23.2   0.0    2.8  2  PAS           PAS fold
    2.6e-06   27.6   0.2    6.7e-06   26.3   0.2    1.8  1  PAS_3         PAS fold
     0.0024   18.2   0.0      0.057   13.7   0.0    2.5  2  GAF_2         GAF domain
     0.0056   17.0   0.0      0.022   15.1   0.0    2.1  1  GAF_3         GAF domain
     0.0075   16.5   0.0        0.5   10.6   0.0    3.2  3  PAS_9         PAS domain
  ------ inclusion threshold ------
      0.043   14.4   0.0       0.17   12.5   0.0    2.1  2  GAF           GAF domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.5   5.6e-24     1e-20       1     110 [.    1259    1387 ..    1259    1389 .. 0.92

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 5.6e-24
                    EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH..............ESEEEEESSCSSSEHHHHHHHHHHCT......TTSEEE CS
  Response_reg    1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek..............vdlillDinmpgmdGlellkeireed......pelpvi 75  
                    +liv+D+ +++++l+++l++ g+ +v +a++g ea+e +k+                  ++l+D++mp mdG+  +keir+ +      +++pvi
    KKY20882.1 1259 ILIVEDNLVNQKVLAKQLQKVGC-VVSVANHGGEAIEFMKKTVyytrdpealkkglkLSVVLMDLEMPVMDGISCAKEIRRMQeagdlrSHVPVI 1352
                    8**********************.***************666666666666777777**********************999888888888**** PP

                    EEESSTSHHHHHHHHHCTESEEEESSG-HHHHHHH CS
  Response_reg   76 iltahseeedavealkagaddflsKpfdpeeLlka 110 
                    ++ta++ e++++ al+ g+dd++sKpf+++eL+ +
    KKY20882.1 1353 AVTANAREKQIEMALSSGMDDVVSKPFRIAELIPK 1387
                    *******************************9865 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   1.1e-23   1.9e-20       2     110 ..    1034    1180 ..    1033    1182 .. 0.81

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 1.1e-23
                  HHHHHHHHHHHHHHHHHHHHS..TTTEEEEEEEE..........................EE.........TEEEEEEEESSSSSTTHHHTGTCSTT CS
   HATPase_c    2 dekrLrqiisnlvdNavkfat..kageieveika..........................se.........ddlvisveDnGiGipkedlkklfekf 61  
                  d++rL q+++nl +Na+kf+t  +   i+v++ +                          +e         ++l++ veD+G+G+  ++ k++f +f
  KKY20882.1 1034 DPSRLLQVLINLTTNAIKFTTqqERRIITVSVAVyqqrpsllddkpveyvtpnrvrfrdpDEgpewgngepVYLHFAVEDTGRGLADSEKKLMFLRF 1130
                  789****************6632333445555557777777766655555555444444411566777789************************** PP

                  CH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEEEEEEES CS
   HATPase_c   62 sq.ddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttftftlpl 110 
                  sq +  t +++gg+GlGl i+++lvel gGei v+s +g+G+ f f+++ 
  KKY20882.1 1131 SQaSPRTHVQYGGSGLGLFISRQLVELQGGEIGVSSVSGEGSIFAFYVKA 1180
                  ***99*****************************************9986 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.4   5.3e-12   9.5e-09       2      66 ..     903     981 ..     902     982 .. 0.85

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 5.3e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC................T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkre..............gklteelkeyletiesearrldhlvedlLdlsriea 66 
                 ++ f+   +HE+r+PLsail  a+ ++ +              ++l e+  +  +ti+ +a++  ++v+d+L+ls++++
  KKY20882.1 903 QENFIDITSHEMRNPLSAILQCADEISSSlsasqslenlaphvKELLESNSDSAQTIILCAQHQKRIVDDVLTLSKLDS 981
                 56789999******************888999999*77777766666777777788888888***************97 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0025       4.4      20     100 ..     438     522 ..     424     531 .. 0.84
   2 !   18.8   0.0   8.3e-07    0.0015       4     108 ..     771     882 ..     768     883 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0025
       PAS_4  20 aNaaaaelfgappeellGktlaellpee......daarleralrrvlegeepiefleelllpgeerhyelrllPlrdesGevigvlv 100
                 +N+a+  l+g     l+G+++ e + e       + a+ +++ ++ ++ +++++      l  ee +++++++Pl  e+G v+g++ 
  KKY20882.1 438 YNEAYILLAGQKHPNLMGQPYKEAWKEIwvavedVFANARSNAQATMKDDDRLFIDRQGFL--EETYFSWSIIPLIGEDGSVVGLYN 522
                 699999999999999*******988888888888999999999999999999988886666..*********************987 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 8.3e-07
       PAS_4   4 lpdalavldpdgrvlyaNaaaaelfgappeellGktla.ellpeedaarleralrrvlegeepiefleelll.......pgeerhyelrllPlrdesGe 94 
                  p++ ++ d+ g++ y+N  + + + +   e  G+ ++ +++ e d++ l+  +++++  + p +++   ++       + ++ +++ +++P r ++G+
  KKY20882.1 771 APVGMFIADSTGKMAYCNDMWFQ-ISRCSREGKGEEDWmDYVQEADRPSLDKSWQKLINNRIPMSSEFRFKHpwrdwngNSGDTWVLASAYPERGADGQ 868
                 69999**************8555.677788899999999*****************************99999******9******************* PP

       PAS_4  95 vigvlvisrDiTer 108
                    +++ ++Di+ +
  KKY20882.1 869 LKRIFGSITDISSQ 882
                 ***********976 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.12   2.1e+02      22      52 ..     434     464 ..     417     493 .. 0.81
   2 !   23.2   0.0     3e-08   5.4e-05       3     113 .]     764     879 ..     762     879 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.12
                 BEEEECHHHHHHHSSTHHHCTTSBGGGGBST CS
         PAS  22 rilyvNaaaeellGlsreevlgkslldlihe 52 
                  i   N+a+  l G +   ++g+++ + + e
  KKY20882.1 434 LIAIYNEAYILLAGQKHPNLMGQPYKEAWKE 464
                 56778********************998866 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 3e-08
                 HHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEEC......TTSSEEEEEEEEEE CS
         PAS   3 lraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfkl......rdgrpihlevrasp 95 
                 + ++ e +p+++f+ D  g++ y+N+ + ++   sre    +  +d++ e d+    ++ +q l +++ + + e +fk        + + ++++  a p
  KKY20882.1 764 FTRMAELAPVGMFIADSTGKMAYCNDMWFQISRCSREGKGEEDWMDYVQEADRP-SLDKSWQKLINNRIPMSSEFRFKHpwrdwnGNSGDTWVLASAYP 861
                 668999*******************************************99876.99999******************9**99999************* PP

                 EEETTEEEEEEEEEEEES CS
         PAS  96 vrdaggeilgflgvlrdi 113
                  r a+g+++ ++g + di
  KKY20882.1 862 ERGADGQLKRIFGSITDI 879
                 *************99998 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.2   3.7e-09   6.7e-06       3      87 ..     786     874 ..     784     876 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 3.7e-09
       PAS_3   3 yvserveeilGyspeellgkveswldlvhpeDrervrealqealkkgepyegeyRirrkdGey......rwveararvirdengkpvrvig 87 
                 y+++ + +i   s+e   +   +w+d+v   Dr+ + +++q++++++ p++ e+R++++  ++      +wv a+a++ r  +g+  r+ g
  KKY20882.1 786 YCNDMWFQISRCSREGKGEE--DWMDYVQEADRPSLDKSWQKLINNRIPMSSEFRFKHPWRDWngnsgdTWVLASAYPERGADGQLKRIFG 874
                 77777777777776665555..*************************************99987777778***************999877 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.18   3.1e+02      86     136 ..     498     550 ..     435     552 .. 0.66
   2 !   13.7   0.0   3.2e-05     0.057      53     137 ..     627     719 ..     578     720 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.18
                 HHHTT--EEEEEE-T.TS---EEEEE.S......--HHHHHHHHHHHHHHHHH CS
       GAF_2  86 ghaglrsflavPlis.egrvvGvlnl.yankppafdeedlelLeelaeqiaia 136
                  ++ + s+ ++Pli+ +g vvG  n  + + +++  e+ +  L+e++e  a a
  KKY20882.1 498 LEETYFSWSIIPLIGeDGSVVGLYNPaFEKTRRKIAERRMLTLREIGEKTASA 550
                 3444444489*****99*****9994123333337777777777777776665 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 3.2e-05
                 ---TTH.HHHHHHHTS-EEES-GGG-S-HHHHHHHHHTT--E........EEEEE..-TTS---EEEEES......--HHHHHHHHHHHHHHHHHH CS
       GAF_2  53 plgegl.vgealrtgrpvilndleedpdkkglpaghaglrsf........lavPl..isegrvvGvlnlyankppafdeedlelLeelaeqiaiai 137
                 + g ++ + +a++  rp++l++   ++   ++   ++  r++        ++ P+  +se+ ++G+l+++ n ++++de+   ++++l++q+a+ i
  KKY20882.1 627 MDGFAPaFRDAVKADRPILLQQ---EDGTLPEGFLDEVERRGfgdpcrsvVVCPIhpTSEESTLGFLVIGNNPRRPYDEDYSLFVQLLGRQLATSI 719
                 4466655889999999999766...4444555544444444445557888*****8666888*******9888888*****************877 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.2e-05     0.022      78     128 ..     668     720 ..     596     721 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.2e-05
       GAF_3  78 lpdraalavPLvagr..qviGvlalastkprafdaedlelleslArqiataie 128
                  p+r++++ P+  ++   ++G+l+++ ++ r++d++   +++ l+rq+at+i+
  KKY20882.1 668 DPCRSVVVCPIHPTSeeSTLGFLVIGNNPRRPYDEDYSLFVQLLGRQLATSIA 720
                 68999999999877778*********************************996 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.21   3.9e+02      13      94 ..     435     519 ..     428     521 .. 0.71
   2 ?   -0.2   0.0      0.66   1.2e+03       6      23 ..     510     528 ..     504     537 .. 0.83
   3 !   10.6   0.0   0.00028       0.5       1     103 [.     772     880 ..     772     881 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.21
       PAS_9  13 ilyaNeaalrllGyspeevlgksitdlf.vtdpeanerlraaleqgrk....kerevevvlirkng..etfwvlltaspvkdddgelvg 94 
                 i  +Nea + l G+++  ++g+++++   +        +++++ + r+    + ++++  +i++ g  e+ ++  +++p++ +dg +vg
  KKY20882.1 435 IAIYNEAYILLAGQKHPNLMGQPYKEAWkE----IWVAVEDVFANARSnaqaTMKDDDRLFIDRQGflEETYFSWSIIPLIGEDGSVVG 519
                 4489999999999999999**999999941....3333333333333334445668888888888888888888999999999998887 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.66
       PAS_9   6 idnpdgril.yaNeaalrl 23 
                 ++ +dg ++  +N+a+++ 
  KKY20882.1 510 LIGEDGSVVgLYNPAFEKT 528
                 4679************985 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00028
       PAS_9   1 pdgilidnpdgrilyaNeaalrllGyspeevlgksitdlf...vtdpeanerlraaleqgrk..kerevevvlirkng..etfwvlltaspvkdddgel 92 
                 p+g++i ++ g++ y+N+++ ++   s+e   g   ++ +   ++ p+ ++  ++++++     +e+++    ++ ng  +  wvl++a+p + +dg l
  KKY20882.1 772 PVGMFIADSTGKMAYCNDMWFQISRCSREG-KGEEDWMDYvqeADRPSLDKSWQKLINNRIPmsSEFRFKHPWRDWNGnsGDTWVLASAYPERGADGQL 869
                 68999988999999******9996544444.555555555677445555555555555555455477777777777778899***************** PP

       PAS_9  93 vgiivilrDit 103
                 ++i + ++Di+
  KKY20882.1 870 KRIFGSITDIS 880
                 **********9 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       9.6   1.7e+04      73     104 ..     491     520 ..     470     521 .. 0.65
   2 ?   12.5   0.0   9.6e-05      0.17      54     133 .]     636     719 ..     574     719 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 9.6
                 HHTTHHHHHHHHTTESEEEEEEEEE.TTEEEEE CS
         GAF  73 faqynrrdllenmgirsslvvPlvn.dgelwGl 104
                 f +  r+ +le++ + s+  +Pl+  dg ++Gl
  KKY20882.1 491 FID--RQGFLEETYF-SWSIIPLIGeDGSVVGL 520
                 555..4444444444.89999999779999997 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 9.6e-05
                 HHHHHSSSEEESTGGTSTT....HHTTHHHHHHHHTTES....EEEEEEEE..ETTEEEEEEEEEE.SSSCSHHHHHHHHHHHHHHHHHHH CS
         GAF  54 qvlatgqplvipdstpdpr....faqynrrdllenmgir....sslvvPlv..ndgelwGllvlhn.psppftreelellqvladqvaval 133
                  +++ ++p++++   +d+     f++      +e+ g+     s++v P++  +++ ++G lv+ n p++p++++   ++q l++q+a ++
  KKY20882.1 636 DAVKADRPILLQQ--EDGTlpegFLD-----EVERRGFGdpcrSVVVCPIHptSEESTLGFLVIGNnPRRPYDEDYSLFVQLLGRQLATSI 719
                 5666678888884..33331112444.....2233333333449*******766999*********97778999999999*******9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.90u 0.29s 00:00:01.19 Elapsed: 00:00:00.50
# Mc/sec: 8379.46
//
Query:       KKY20883.1  [L=364]
Description: putative xylitol dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-33  114.9   1.9    1.7e-33  114.8   0.1    1.9  2  ADH_N            Alcohol dehydrogenase GroES-like domain
    5.4e-23   81.4   0.1    1.1e-22   80.4   0.1    1.5  1  ADH_zinc_N       Zinc-binding dehydrogenase
    3.4e-08   33.2   0.2    8.7e-08   31.9   0.1    1.8  2  Glu_dehyd_C      Glucose dehydrogenase C-terminus
     0.0048   18.0   0.0      0.012   16.6   0.0    1.7  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
     0.0089   15.3   0.2      0.014   14.7   0.2    1.3  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.013   15.3   0.0       0.04   13.7   0.0    1.8  2  Methyltransf_31  Methyltransferase domain
      0.021   14.0   0.4      0.088   12.0   0.4    1.9  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
      0.023   14.3   0.0      0.037   13.6   0.0    1.3  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
      0.025   15.3   0.0      0.079   13.7   0.0    1.8  2  Methyltransf_25  Methyltransferase domain
      0.053   12.2   0.3      0.075   11.7   0.3    1.2  1  HI0933_like      HI0933-like protein


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.8   0.1   9.4e-37   1.7e-33       3     109 .]      44     153 ..      42     153 .. 0.97
   2 ?   -1.6   0.2       1.4   2.5e+03      50      64 ..     177     191 ..     169     204 .. 0.69

  Alignments for each domain:
  == domain 1  score: 114.8 bits;  conditional E-value: 9.4e-37
                 EEEEEEEEEEE-HHHHHHHTTS..TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTS.S-SSSBSE CS
       ADH_N   3 evlikvkaagiCgsDlhilkgg..kelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvs.ldGgfaey 98 
                 +v+++vk++giCgsD+h+++ g    + vk p++lGHE +G++++vg++v++lk GdrV++ep i+c +C++Ckeg++nlC++ ++  +  +dG++a+y
  KKY20883.1  44 DVIVEVKYTGICGSDVHYWQSGaiGAFVVKDPMVLGHESAGVISQVGSSVTSLKPGDRVAMEPGIPCRRCERCKEGKYNLCPKVAFAATPpYDGTLAKY 142
                 89******************99888999************************************************************999******** PP

                 EEECGGGEEEE CS
       ADH_N  99 vvvpekklvkl 109
                 +v+pe++++kl
  KKY20883.1 143 YVLPEDFCYKL 153
                 ********986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.4
                 -CS--TT-EEEE-SE CS
       ADH_N  50 vkklkvGdrVvvepl 64 
                  +++k Gd Vvv  +
  KKY20883.1 177 QSGIKQGDSVVVFGA 191
                 345999999999655 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.1   5.9e-26   1.1e-22       1     128 [.     193     324 ..     193     326 .. 0.93

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 5.9e-26
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEET....TTCHHHHHHHHHTT.TSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSS CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadeviny....keadlverikeltg.gegvdvvfecvGsgatleaalkllkpgGrlvvvGggkg 93 
                 +vGl+ +++Aka+Ga ++i vd+ +++le+akk+ a+ ++ +    +  +  er+++  + ++g+d++++++G++ ++++a+ +l+ gG  v  G+gk+
  KKY20883.1 193 PVGLLCCAVAKAFGAgKIISVDIVKHRLEFAKKYAATGTFEPervaSA-QNAERLRKENDlPDGFDIAIDASGVEPSIQTAIHALRVGGSYVQAGMGKD 290
                 7*****************************************554322.47888999988899*********************************998 PP

                 EEEEEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHH CS
  ADH_zinc_N  94 eeefdlrnlllkeksilGsllgslreefkealdll 128
                 + +f+++    ke++i+Gs++++ + ++k aldl 
  KKY20883.1 291 DCVFPIGAACGKELTIKGSFRYG-SGDYKLALDLT 324
                 888********************.9****999985 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       4.9   8.7e+03      94     107 ..      36      49 ..      33      53 .. 0.82
   2 !   31.9   0.1   4.8e-11   8.7e-08       5     210 ..     163     361 ..     159     362 .. 0.77

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 4.9
  Glu_dehyd_C  94 ipeaseemdlvvEa 107
                  +pe++++ d++vE 
   KKY20883.1  36 VPEIKSPYDVIVEV 49 
                  68889999**9995 PP

  == domain 2  score: 31.9 bits;  conditional E-value: 4.8e-11
  Glu_dehyd_C   5 vLvEPisiveKaielaeasrsafewepesalvlGaGslGLLalalleae.erglervyvlgrrdrpdptidlveelGatYvdsre..tpvdeipease 99 
                   L+EP++++         ++++   + +s++v GaG++GLL  a+ +a    ++  v ++  r +  ++           v s++  + + + ++   
   KKY20883.1 163 ALMEPLAVAVH------VTKQSGIKQGDSVVVFGAGPVGLLCCAVAKAFgAGKIISVDIVKHRLEFAKKYAATGTFEPERVASAQnaERLRKENDLPD 254
                  56666655432......24444456789**************98877631344556777778888788888888888777877541156788888899 PP

  Glu_dehyd_C 100 emdlvvEaTGsakhafeaiealapnGvaaLlGvpedsevevdggelhrelvleNkalvGsvNanrrhfeaavdtLaalpeslldelvtkvvdldelee 197
                   +d+ ++a G  + +  ai+al+  G  + +G+ +d  v   g +  +el      + Gs       ++ a+d L+++ +  +++l+t++vd++++ee
   KKY20883.1 255 GFDIAIDASGVEPSIQTAIHALRVGGSYVQAGMGKDDCVFPIGAACGKEL-----TIKGSFRYGSGDYKLALD-LTSTGKINVKDLITGKVDFENAEE 346
                  9*********************************9985544455666775.....56688888899****997.778888889*************** PP

  Glu_dehyd_C 198 Afeddd..etiKtvv 210
                  Af+d +  + iKt +
   KKY20883.1 347 AFSDVKagKGIKTLI 361
                  **9765336788865 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   6.9e-06     0.012      17     126 ..     250     355 ..     233     357 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6.9e-06
                   HH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--..S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHHHH---..-EEEE CS
  ADH_zinc_N_2  17 atggegvDvvldtvggealleaslkvlpggGrlvsig.gpp.lsaallkpakkrkgrsvkyeflfsmkasaqadileelaalieeGklrp..vvdrv 109
                      ++g+D+++d+ g e  ++ ++++l+ gG +v+ g g+  + + +++    + g+ ++++  f    +   d  +  ++l + Gk+++   ++  
    KKY20883.1 250 NDLPDGFDIAIDASGVEPSIQTAIHALRVGGSYVQAGmGKDdCVFPIGA----ACGKELTIKGSFR--YG-SGD-YKLALDLTSTGKINVkdLITGK 338
                   33489**********5555588889**999******9765422222222....3345556666662..22.445.8999********7653368889 PP

                   EEGGGHHHHHHHHHSS- CS
  ADH_zinc_N_2 110 fpleeaaeAhrylesgr 126
                    ++e+a eA+ ++++g+
    KKY20883.1 339 VDFENAEEAFSDVKAGK 355
                   99*********999986 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2   8.1e-06     0.014      19      73 ..     176     229 ..     161     253 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.1e-06
                  TTCEETCB---EEEEESTSHHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTTC CS
  AlaDh_PNT_C  19 laGgvpgvepakvlviGgGvaGlqAiatakglga.kVtvlDvrparleqleslgak 73 
                    +g++  +   v+v+G+G +Gl   a+ak++ga k+  +D+ ++rle  +++ a+
   KKY20883.1 176 KQSGIK--QGDSVVVFGAGPVGLLCCAVAKAFGAgKIISVDIVKHRLEFAKKYAAT 229
                  334444..445799*******************96789999999999999985554 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.3   2.3e+03      55      79 ..      18      47 ..      15      51 .. 0.63
   2 ?   13.7   0.0   2.2e-05      0.04      15      81 ..     195     262 ..     180     293 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.3
  Methyltransf_31 55 nveFeqgdieeleklled.......ekfDlil 79
                     n++F  +++ + +  +ed       +++D+i+
       KKY20883.1 18 NLSFVLQSVKQVK--FEDrpvpeikSPYDVIV 47
                     5666666666655..55555555558899987 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.2e-05
  Methyltransf_31  15 GeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklled..ekfDlilsn 81 
                      G l+ + a +++  ++++++Di ++ +e+A++ a+   ++ +   +++++e l k  +d  + fD+ ++ 
       KKY20883.1 195 GLLCCAVA-KAFGAGKIISVDIVKHRLEFAKKYAATGTFEpERVASAQNAERLRKE-NDlpDGFDIAIDA 262
                      66777888.88889**************************6555566777776653.33448***99986 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.66   1.2e+03     153     178 ..      78     103 ..      77     115 .. 0.80
   2 ?   12.0   0.4   4.9e-05     0.088     142     177 ..     181     222 ..     158     251 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.66
                  HHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 153 iGvElAaalaklgkevtlveardrll 178
                   G E A++++++g+ vt ++ +dr+ 
   KKY20883.1  78 LGHESAGVISQVGSSVTSLKPGDRVA 103
                  58899999999999999999999986 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 4.9e-05
                  T..SEEEEES-SHHHHHHHHHHHHHT-....EEEEEESSSSS CS
                  x..xxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx RF
  Pyr_redox_2 142 p..krivvvGgGyiGvElAaalaklgk....evtlveardrl 177
                  +  +++vv G+G++G+ ++a+++ +g+     v +v++r ++
   KKY20883.1 181 KqgDSVVVFGAGPVGLLCCAVAKAFGAgkiiSVDIVKHRLEF 222
                  04589********************98766656666655554 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.1e-05     0.037       3      41 ..     186     225 ..     184     258 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.1e-05
                     EEEE--STTHHHHHHHHHHCT.SEEEEE-S-HHHHHHHCT CS
  UDPG_MGDP_dh_N   3 isviGlGYvGlvtaavlaeig.hevigvDideekvdklns 41 
                     ++v+G+G vGl ++av  + g  ++i vDi +++ +  ++
      KKY20883.1 186 VVVFGAGPVGLLCCAVAKAFGaGKIISVDIVKHRLEFAKK 225
                     89***************999978*********99886655 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         4   7.1e+03      47      64 ..      18      35 ..      11      47 .. 0.78
   2 ?   13.7   0.0   4.4e-05     0.079       4      69 ..     189     260 ..     186     278 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4
                     TEEEEESBCCGBSSSTTT CS
  Methyltransf_25 47 nvefvqgdaedlpfedgs 64
                     n++fv +++++++fed+ 
       KKY20883.1 18 NLSFVLQSVKQVKFEDRP 35
                     788999999999988865 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 4.4e-05
                      ET-TT.SHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTT...TEEEEE CS
  Methyltransf_25   4 lGcGt.GrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedg...sfDlvv 69 
                      +G+G+ G l+ a+ak++g++k++ vDi +  le a++ a+   +  +     ++ae+l  e++    fD+ +
       KKY20883.1 189 FGAGPvGLLCCAVAKAFGAGKIISVDIVKHRLEFAKKYAATGTFepERVASAQNAERLRKENDlpdGFDIAI 260
                      67776699999**************************99764444333334456666654332222666655 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   4.2e-05     0.075       2      43 ..     185     230 ..     184     232 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.2e-05
                  SEEEE--SHHHHHHHHHHHHTT-....-EEEE-SSSSS-HHHHHCG CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgk....rVlllekakklgrKilisG 43 
                  +v+v G+G+ Gl++++ a++ g+    +V ++ +  ++++K + +G
   KKY20883.1 185 SVVVFGAGPVGLLCCAVAKAFGAgkiiSVDIVKHRLEFAKKYAATG 230
                  69*************9996544322338999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.61u 0.34s 00:00:00.95 Elapsed: 00:00:00.53
# Mc/sec: 2083.08
//
Query:       KKY20884.1  [L=873]
Description: putative naringenin 3-dioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-36  124.7   0.1    5.7e-33  114.2   0.0    2.5  2  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    1.3e-15   57.7   0.0    3.6e-15   56.3   0.0    1.8  2  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
     0.0062   16.4   0.0       0.01   15.7   0.0    1.3  1  GxGYxYP_C     GxGYxYP putative glycoside hydrolase C-terminal


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.2   0.0   9.5e-37   5.7e-33       1     117 [.     524     644 ..     524     645 .. 0.94
   2 !    7.9   0.0   0.00083         5      27     102 ..     660     735 ..     651     749 .. 0.72

  Alignments for each domain:
  == domain 1  score: 114.2 bits;  conditional E-value: 9.5e-37
      DIOX_N   1 iPvidlsplsddedraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKekl..akspsfrGysrlgeektdgkkldwkesfdlgt 97 
                 iP++dls+++++e ++a++e+lr A+ evGf+y++n+g++++l+++++e+ + FF+lPe++K+++  ++ psf Gysrlg+e t+  k dw+e++dl+t
  KKY20884.1 524 IPILDLSEAQKPELKSAFLEKLRYALLEVGFLYIKNTGIDPQLVQRVIEQGKAFFDLPESKKLEIemKNAPSFLGYSRLGNEITRH-KVDWREQIDLST 621
                 9******9988899***************************************************866668**************9.************ PP

      DIOX_N  98 elp...eddpagkplegpnqwPe 117
                  +p   +++p +++l  pnqwP+
  KKY20884.1 622 THPlrkSSEPLYRNLLSPNQWPD 644
                 *996655566************8 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00083
      DIOX_N  27 revGffyvvnhgvpeelidelfeaareFFalPeeeKeklaksp..sfrGysrlgeektdgkkldwkesfdlgtelped 102
                 r++G + v+ + + +e i   ++a ++FF+ +++ K+k+ k p  +  G ++ + e+  g ++  k+s+  ++ l+++
  KKY20884.1 660 RRMGTMSVEFTSLIAEAIGLPKDAFNQFFDRSQQHKLKIVKYPdlAELGVEDDHGESQ-G-VGPHKDSMLTSYLLQAS 735
                 5566666666666667777778999**************5554378899988777765.3.67777776666665555 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.5   1.5e+04      46      84 ..     572     612 ..     563     616 .. 0.72
   2 !   56.3   0.0   6.1e-19   3.6e-15      14      98 ..     710     798 ..     693     801 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.5
                   EETE.EEE----T.TEEEEEE-HHHHHHTTS-S----EEE- CS
  2OG-FeII_Oxy  46 kdgk.wlrvppvd.nslivniGdallflsngryksvlHrVl 84 
                   ++gk + ++p+++ +++++++ +++l +s    + ++H+V 
    KKY20884.1 572 EQGKaFFDLPESKkLEIEMKNAPSFLGYSRLGNEITRHKVD 612
                   56777888888443777777888777777777888888886 PP

  == domain 2  score: 56.3 bits;  conditional E-value: 6.1e-19
                   -----.---EEEEEESSSEEEEEEE-.TT---EEEE.TEEEE----TTEEEEEE-HHHHHHTTS-S----EEE-.---GTGSEEEEEEE CS
  2OG-FeII_Oxy  14 pdpev.ilglgahtdaslltillqdd.vgglevfkd.gkwlrvppvdnslivniGdallflsngryksvlHrVl.pvnegerRvsiayf 98 
                    d++  ++g+g+h+d  l ++llq +   gl+v+++ g+w+++pp d++++v iG+ ++ l+ g  +s+ HrVl p + +  R+si +f
    KKY20884.1 710 EDDHGeSQGVGPHKDSMLTSYLLQAShHRGLQVQNNdGEWIDCPPLDGTFVVAIGQGMEALTRGVCQSTTHRVLnPPRGTGARFSIPFF 798
                   3444359**************************966366***********************************98888888******9 PP

>> GxGYxYP_C  GxGYxYP putative glycoside hydrolase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.7e-06      0.01      78     141 ..     639     702 ..     637     714 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.7e-06
                 GGGS-HHH.HHHHHHHHHHHHHHHT--EEEEEESSG...GG-HHHHHHHHHSTT--EEEEEETT- CS
   GxGYxYP_C  78 Psklprsa.ldeylaktneymkktdlkilgvldndnenvdlaqelidkyaealnidggfyakyas 141
                 P+++p+++ l e+ a  +eym+++++  +++ +  +e++ l++++ +++ ++++++++ + ky +
  KKY20884.1 639 PNQWPDADfLPEFRAVYEEYMRRMGTMSVEFTSLIAEAIGLPKDAFNQFFDRSQQHKLKIVKY-P 702
                 9*******************************************************9999888.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (873 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 5503.66
//
Query:       KKY20885.1  [L=312]
Description: putative triacylglycerol lipase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 2101.64
//
Query:       KKY20886.1  [L=341]
Description: putative arrestin (or s-antigen) n-terminal domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-12   45.6   0.0    2.6e-09   37.3   0.0    2.1  2  Arrestin_N  Arrestin (or S-antigen), N-terminal domain


Domain annotation for each model (and alignments):
>> Arrestin_N  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   1.5e-13   2.6e-09       9     106 ..       6     113 ..       2     121 .. 0.85
   2 !    6.4   0.0   0.00049       8.8     104     137 ..     144     179 ..     137     188 .. 0.74

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 1.5e-13
                 EEEEETT--EEEEEEE-CCCCTT.CEEEEEEEEEEEESSSSTTTT............CCCEEEEEEEEEEEEESTSSSSS.SSSSHHHHHHHH-TTEEE CS
  Arrestin_N   9 devyhpgetvdGkvlleteelkkarkvkielsgkartgweeseva............gktfrkdltlkkkqeyleteksllkskkdsqekLpkGehafp 95 
                 + +y   + v+G+v+l+   + +  ++ ++l+g+ rt+ +  +              +  f++ l+++++  +++t +   +  ++s+ +Lp G++++p
  KKY20886.1   6 SATYTNLDIVTGRVILNLPAQASFSSIIVKLEGESRTRLQGIRPGaysdgqqgkpttETEFHRLLYMTQT--VFPTPELQRQIRSGSSYTLPPGQYEYP 102
                 566777799*******************************9998899*****999966666666666654..5555555567779************** PP

                 EEE---TTS-- CS
  Arrestin_N  96 FsfelPknlps 106
                 F f++P n ++
  KKY20886.1 103 FQFKIPFNNVC 113
                 ******98766 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00049
                 S--SECSGEE..EEEEEEEEEEECCCE--C.CCEEE CS
  Arrestin_N 104 lpsSfeGkag..gvrYevkvtldrpwkidkkkkkvf 137
                 lp+++ G  g  +++Y+vkvt +rp+ ++++ +   
  KKY20886.1 144 LPPTLGGFPGlaEIKYFVKVTAARPKFFQENLRAPE 179
                 6777767666448************98888765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      156  (0.00870099); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 2137.95
//
Query:       KKY20887.1  [L=515]
Description: putative anaphase-promoting complex subunit apc5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-11   43.9   1.6    2.3e-10   40.4   0.0    3.1  3  ANAPC5         Anaphase-promoting complex subunit 5
     0.0015   18.8   8.5        1.4    9.2   0.5    5.1  5  TPR_12         Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.054   14.0   5.2        9.4    6.8   0.1    4.7  5  TPR_19         Tetratricopeptide repeat
       0.08   12.8   0.2       0.19   11.6   0.2    1.6  1  Mt_ATP_synt    Mitochondrial ATP synthase subunit
       0.11   11.9   1.7        1.1    8.5   0.2    2.9  3  TPR_MalT       MalT-like TPR region
       0.12   12.3   6.7         11    6.0   0.1    5.0  5  TPR_10         Tetratricopeptide repeat
        0.3   11.6   6.0       0.62   10.6   6.0    1.5  1  Calpain_inhib  Calpain inhibitor
        2.1    9.4   6.2    2.2e+02    3.1   0.1    5.0  5  TPR_14         Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> ANAPC5  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0     1e-13   2.3e-10      57      93 ..       9      45 ..       6      46 .. 0.95
   2 ?    0.9   0.1      0.22   4.9e+02      11      45 ..     177     210 ..     167     232 .. 0.78
   3 ?   -2.7   0.0       2.9   6.5e+03      65      86 ..     437     458 ..     430     466 .. 0.71

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 1e-13
      ANAPC5 57 neeAvkaleeairlArenkDkscLalalawlarllkk 93
                ++eA+ a++eai++ArenkD scL+++++wl++++k+
  KKY20887.1  9 YHEAIPAMQEAIATARENKDVSCLNFCMSWLYHFDKA 45
                689*******************************985 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
      ANAPC5  11 akdYqqaldsLhryFDyvlsqnessqkksyqyalL 45 
                 +  +++al+ L +  Dy   +  +   ++yqy ++
  KKY20887.1 177 QGAFEHALEMLANVTDYCGPHVLRV-LNYYQYWVF 210
                 457899***********99888777.677887765 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.9
      ANAPC5  65 eeairlArenkDkscLalalaw 86 
                   +i++ +++k+++ ++ al  
  KKY20887.1 437 DASISIPQNRKSEELMNEALDL 458
                 5568888888888888877655 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.16   3.5e+02      18      36 ..       8      26 ..       4      30 .. 0.80
   2 !    5.9   0.0     0.007        16      43      69 ..     162     188 ..     147     194 .. 0.86
   3 ?    1.5   0.0      0.16   3.6e+02       6      36 ..     292     322 ..     288     333 .. 0.80
   4 ?    0.1   0.1      0.44   9.8e+02      19      53 ..     345     377 ..     329     387 .. 0.76
   5 !    9.2   0.5   0.00064       1.4      19      75 ..     452     506 ..     447     508 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.16
      TPR_12 18 rydeAlellekaleiarrl 36
                 y+eA+   ++a++ ar+ 
  KKY20887.1  8 FYHEAIPAMQEAIATAREN 26
                5899999999999988765 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.007
      TPR_12  43 ltattlrnLgrlyralgryeeAlelle 69 
                 +t+ +l+ ++ +++++g +e Ale+l 
  KKY20887.1 162 DTLKALCRMSNMLSQQGAFEHALEMLA 188
                 588999999999999999999999985 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.16
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrl 36 
                 ln  a++l+r g+ + A+++  +a  +a+r+
  KKY20887.1 292 LNLKALTLCRSGNPTHAFSIAVRAATMANRT 322
                 5567888888999888888888888887765 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.44
      TPR_12  19 ydeAlellekaleiarrllGpdhpltattlrnLgr 53 
                 +  A +lle+ l +  ++   d+ lta+++  L +
  KKY20887.1 345 FSAATALLEAILPASLET--LDNTLTARVYSLLVD 377
                 567888999999999888..78889**99998855 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.00064
      TPR_12  19 ydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 + eAl+lle a e ++ +  +d+ + ++ +   ++++ alg++ + + + ++ l+++
  KKY20887.1 452 MNEALDLLESAFEKYEDT--EDWKGMLEMMAKRATVFKALGDHGACELASQRYLDLR 506
                 679***************..***********************98888888888776 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.6   3.6e+03       7      27 ..       9      29 ..       9      32 .. 0.83
   2 ?    1.8   0.0      0.16   3.6e+02      30      51 ..     169     190 ..     160     193 .. 0.74
   3 ?    0.1   0.0      0.55   1.2e+03      39      58 ..     224     243 ..     220     250 .. 0.61
   4 ?    6.8   0.1    0.0042       9.4      21      54 ..     325     358 ..     301     364 .. 0.80
   5 ?    2.4   0.0     0.098   2.2e+02       9      29 ..     454     474 ..     450     491 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.6
      TPR_19  7 yaeAlalleqalqedpknaea 27
                y eA++++++a++ + +n ++
  KKY20887.1  9 YHEAIPAMQEAIATARENKDV 29
                67999*****99988888775 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.16
      TPR_19  30 lLAeallalgqldeAealLdal 51 
                 ++ + l ++g ++ A ++L+ +
  KKY20887.1 169 RMSNMLSQQGAFEHALEMLANV 190
                 5667788888888888888755 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.55
      TPR_19  39 gqldeAealLdalpeedpdd 58 
                  +l++Ae +L++l ++ + d
  KKY20887.1 224 HDLNAAEHILSQLKAQGAPD 243
                 45666666666666665554 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0042
      TPR_19  21 dpknaearllLAeallalgqldeAealLdalpee 54 
                  p  +ea + L e+l++l ++ +A alL+a++++
  KKY20887.1 325 LPALWEAIATLSEILISLYEFSAATALLEAILPA 358
                 66778999***********************976 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.098
      TPR_19   9 eAlalleqalqedpknaearl 29 
                 eAl+lle+a++++ + ++ + 
  KKY20887.1 454 EALDLLESAFEKYEDTEDWKG 474
                 899999999998887666554 PP

>> Mt_ATP_synt  Mitochondrial ATP synthase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   8.5e-05      0.19     105     150 ..     445     490 ..     435     502 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.5e-05
  Mt_ATP_synt 105 eegaealmmeaLdkvEkeigkpLlrsdkkgmalleaeldkinkklg 150
                  +   e+lm eaLd  E++  k  +++d kgm  ++a+ + + k+lg
   KKY20887.1 445 NRKSEELMNEALDLLESAFEKYEDTEDWKGMLEMMAKRATVFKALG 490
                  5667999**********************************99998 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.3   2.9e+03      57      74 ..      10      27 ..       6      34 .. 0.76
   2 ?    8.5   0.2   0.00049       1.1      74     147 ..     158     235 ..     140     257 .. 0.81
   3 ?    3.1   0.1     0.023        51     209     316 ..     217     325 ..     203     344 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.3
    TPR_MalT 57 eaAlqalqeaeklarqad 74
                ++A  a+qea+++ar+ +
  KKY20887.1 10 HEAIPAMQEAIATARENK 27
                678888888888887765 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00049
    TPR_MalT  74 dslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladl....lyEwndLeeAeqhlqe 147
                   +  +l al++ +++l +qG ++ Ale+    + +   + l++l  ++  +   + +    ++ ++dL +Ae+ l +
  KKY20887.1 158 APMEDTLKALCRMSNMLSQQGAFEHALEMLANVTDYCGPHVLRVLNYYQYWVFFSGLVkfrrFLHRHDLNAAEHILSQ 235
                 45678999********************************99999988877666666544556788889888888865 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.023
    TPR_MalT 209 vrlwlaqgdlaaaerwleaaelp.sdddnhflelelrnlarvllalgrydeAlellerLlkaaeel.grvrslieiliLqalalqaqgreeeAlaaLeq 305
                  r +l+++dl aae  l++ + + ++d ++   +   + +   +  ++y +A +++++++++     + + ++i+ l L al l ++g++  A +   +
  KKY20887.1 217 FRRFLHRHDLNAAEHILSQLKAQgAPDIEVAFTFS-VLEIEYFIVSADYPSAISTITQIVESNAPIvNDIFAQIKFLNLKALTLCRSGNPTHAFSIAVR 314
                 56678899999999999988655244445433333.334556677889999999999999887754488889999999999999999999999999999 PP

    TPR_MalT 306 ALeLAepegyi 316
                 A ++A+ ++ +
  KKY20887.1 315 AATMANRTRIL 325
                 99999888765 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.076   1.7e+02      18      34 ..       9      25 ..       5      26 .. 0.92
   2 ?    6.0   0.1    0.0051        11       1      25 [.     163     187 ..     163     190 .. 0.88
   3 ?   -0.4   0.0      0.52   1.2e+03       9      32 ..     296     319 ..     292     322 .. 0.83
   4 ?    1.0   0.0       0.2   4.4e+02       7      30 ..     334     357 ..     330     365 .. 0.81
   5 ?    1.1   0.1      0.18     4e+02      19      33 ..     453     467 ..     447     469 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.076
      TPR_10 18 ydeAealleealairrr 34
                y+eA   ++ea+a+ r+
  KKY20887.1  9 YHEAIPAMQEAIATARE 25
                78999*********987 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0051
      TPR_10   1 tAsslnNLanalrqrgrydeAeall 25 
                 t+ +l  ++n+l+q+g ++ A+++l
  KKY20887.1 163 TLKALCRMSNMLSQQGAFEHALEML 187
                 667888899*************997 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.52
      TPR_10   9 analrqrgrydeAealleealair 32 
                 a +l++ g+ + A  ++ +a  + 
  KKY20887.1 296 ALTLCRSGNPTHAFSIAVRAATMA 319
                 889999*******99999998776 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.2
      TPR_10   7 NLanalrqrgrydeAealleeala 30 
                  L+ +l +++++ +A alle  l 
  KKY20887.1 334 TLSEILISLYEFSAATALLEAILP 357
                 68899999**********998775 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.18
      TPR_10  19 deAealleealairr 33 
                 +eA++lle a + ++
  KKY20887.1 453 NEALDLLESAFEKYE 467
                 589999999998887 PP

>> Calpain_inhib  Calpain inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   6.0   0.00028      0.62      13      80 ..     401     468 ..     387     480 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00028
  Calpain_inhib  13 aapaskapkpakkakkaaasakalasevvsaaaapavksaapekeeekesmsddAldaLsdsLgkrep 80 
                    ++++s +p++++k+k+++++ ++ +s+ ++ + a+a+ s   ++++++e+ +++Ald L    +k e 
     KKY20887.1 401 PSSTSTSPQAKSKSKAKKQTPTTIPSKSTKPTIATADASISIPQNRKSEELMNEALDLLESAFEKYED 468
                    334444444444443344344478888899999999999999999999***********998887765 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.3   5.2e+03      17      34 ..       9      26 ..       5      29 .. 0.82
   2 ?    2.1   0.0       0.2   4.6e+02       6      27 ..     169     190 ..     164     205 .. 0.80
   3 ?    3.1   0.1     0.098   2.2e+02       1      29 [.     329     357 ..     329     372 .. 0.86
   4 ?    1.7   0.1      0.28   6.3e+02      19      40 ..     454     475 ..     448     482 .. 0.81
   5 ?    0.4   0.1      0.71   1.6e+03       5      29 ..     480     504 ..     476     512 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.3
      TPR_14 17 pdeAiallrralalaPdd 34
                + eAi + ++a+a+a ++
  KKY20887.1  9 YHEAIPAMQEAIATAREN 26
                579999999999987655 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.2
      TPR_14   6 alaeallalGdpdeAiallrra 27 
                 ++   l ++G ++ A+++l  +
  KKY20887.1 169 RMSNMLSQQGAFEHALEMLANV 190
                 55677899**********9866 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.098
      TPR_14   1 peallalaeallalGdpdeAiallrrala 29 
                 +ea + l e+l  l ++ +A all+++l 
  KKY20887.1 329 WEAIATLSEILISLYEFSAATALLEAILP 357
                 68889999******************974 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.28
      TPR_14  19 eAiallrralalaPddaeawll 40 
                 eA++ll+ a +++ d +++  +
  KKY20887.1 454 EALDLLESAFEKYEDTEDWKGM 475
                 89*********99987665544 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.71
      TPR_14   5 lalaeallalGdpdeAiallrrala 29 
                 +++a ++ alGd+ + + + +r+l+
  KKY20887.1 480 AKRATVFKALGDHGACELASQRYLD 504
                 78999*******9987766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1240  (0.0691617); expected 358.6 (0.02)
Passed bias filter:                      726  (0.0404931); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.51
# Mc/sec: 3010.00
//
Query:       KKY20888.1  [L=148]
Description: putative cytochrome c oxidase subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-53  178.3   0.8    6.4e-53  178.0   0.8    1.1  1  COX6A     Cytochrome c oxidase subunit VIa


Domain annotation for each model (and alignments):
>> COX6A  Cytochrome c oxidase subunit VIa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.0   0.8   3.5e-57   6.4e-53       4     112 .]      33     143 ..      30     143 .. 0.96

  Alignments for each domain:
  == domain 1  score: 178.0 bits;  conditional E-value: 3.5e-57
       COX6A   4 aqrrfasseakkaa..aaeneFvkereavkeHaeettdlwrklslyvaipalilaainaynlekeHaeHvehlkeleerteYeYqnirtknffwGdGdk 100
                 +qrrfas ++  +    a+n+F++ereavk+Ha+et+dlwr+ls+yv+ip++i+a+inaynl++eH+eH+ehl++leerteY+Yqnirt+nf +GdGdk
  KKY20888.1  33 VQRRFASGSQPGKLtgPADNAFNREREAVKQHAAETSDLWRRLSIYVVIPTIIIASINAYNLWNEHWEHWEHLPPLEERTEYPYQNIRTRNFWFGDGDK 131
                 79****999876656689********************************************************************************* PP

       COX6A 101 tlFwNdkvNyhk 112
                 tlFwNdkvNyh+
  KKY20888.1 132 TLFWNDKVNYHN 143
                 ***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.32s 00:00:00.80 Elapsed: 00:00:00.49
# Mc/sec: 902.59
//
Query:       KKY20889.1  [L=597]
Description: putative dna lyase apn2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-09   36.4   0.0    6.5e-09   35.6   0.0    1.3  1  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family
    0.00054   20.0   0.9     0.0015   18.6   0.9    1.8  1  zf-GRF           GRF zinc finger
  ------ inclusion threshold ------
      0.016   15.0   0.0        8.2    6.3   0.0    2.5  2  Exo_endo_phos_2  Endonuclease-reverse transcriptase


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   1.1e-12   6.5e-09      69     233 .]      35     277 ..       7     277 .. 0.77

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 1.1e-12
                    STTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE................................................. CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................. RF
  Exo_endo_phos  69 ggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlni................................................. 115
                     +g+ g++++ r ++ +               +r e  +a ++++ +                                                 
     KKY20889.1  35 KKGYAGVVIYTRNSVCAP--------------TRAEEGIAGVLCPPNsktsfrdlpedqqiggyptmeqlsesevdavtldsegrcvilefpafvi 116
                    467778888888888555..............3334444444444444555556666666688888888888888888889999999999999999 PP

                    ......CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH............................. CS
                    ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................. RF
  Exo_endo_phos 116 ......ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapap............................. 176
                          a +   ++  +l +l +l+++ ++    g++vi++GD N    + d+             +                             
     KKY20889.1 117 lgvycpANRDESRDNFRLGFLNVLDARVRNLVKMGKRVILTGDINISREEIDTA------------Aaeetmrknglpgleycstparrlfnqllv 200
                    99999*****************************************32222222............223444677777788888887777776666 PP

                    ...H........................SSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECCHHEECTSSCSSSB CS
                    ...x........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 177 ...v........................glyllgggptptyvtraggsrlDrilaspalalfrsgvlppplalvrrealtlSDH 233
                       v                         + ++++++  ++++ ++gsr+D++l s +++ + s +++ ++       l +SDH
     KKY20889.1 201 dgkVfgppdegreqpvlcdvtrafhptrKGMYTCWETKINARPGNFGSRIDYVLCSAEMKDWFSDSNIQEG-------LLGSDH 277
                    655055666667777788889999*********************************99999999999987.......568999 PP

>> zf-GRF  GRF zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.9   2.5e-07    0.0015       1      31 [.     528     558 ..     528     581 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.5e-07
      zf-GRF   1 plCkcgrlavlltvrktgpNkGRkFYkCpkg 31 
                 p+C++ +++++   +k g N GR F+ C+ +
  KKY20889.1 528 PMCEHDEPCKTMLTKKPGINCGRSFWMCARP 558
                 79**************************876 PP

>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0014       8.2       2      45 ..     115     166 ..     114     184 .. 0.68
   2 ?    6.1   0.0    0.0016       9.8      79     119 .]     239     281 ..     224     281 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0014
  Exo_endo_phos_2   2 liisvYippsd..........elenlestlekllselkspkiiilGDfNakhpl 45 
                       i+ vY+p ++           l+ l++ +++l++  k  ++i++GD+N   ++
       KKY20889.1 115 VILGVYCPANRdesrdnfrlgFLNVLDARVRNLVKMGK--RVILTGDINISREE 166
                      57889**9999996666444444444444444444444..9********98766 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0016
  Exo_endo_phos_2  79 ptfkssngsstiDltltsdnlals..kleleeedlgSDHrpil 119
                       + ++ n  s iD +l s+++ +     +++e  lgSDH p++
       KKY20889.1 239 INARPGNFGSRIDYVLCSAEMKDWfsDSNIQEGLLGSDHCPVY 281
                      44555555899*********9999988889999*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.49
# Mc/sec: 3685.19
//
Query:       KKY20890.1  [L=253]
Description: hypothetical protein UCRPC4_g03966 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1670.05
//
Query:       KKY20891.1  [L=345]
Description: putative alpha domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-29  101.4   0.0    5.7e-29  100.9   0.0    1.3  1  MATalpha_HMGbox  Mating-type protein MAT alpha 1 HMG-box


Domain annotation for each model (and alignments):
>> MATalpha_HMGbox  Mating-type protein MAT alpha 1 HMG-box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.0   3.2e-33   5.7e-29      36     180 ..      79     215 ..      26     233 .. 0.84

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 3.2e-33
  MATalpha_HMGbox  36 reakakkakkklNgFmgfRsYylkLfsdlqqkeaSgfltqlWekdpfrnkWdliakvYsaiRdqlgkdkvtLqkflsiavphlkivepesYlel 129
                      ++ + k++ ++lN F++fRsYy+++f+ l+qk++Sg++  lWe d  + kW+l+ak++  +R  +g   ++L++fl ia p ++i+ p +Yl++
       KKY20891.1  79 ISGPLKQKLRPLNSFIAFRSYYSPIFHGLTQKAKSGLMRLLWESDCCKGKWSLVAKAFTEVR--VGG--INLESFLAIATPLIGIIPPGQYLDT 168
                      4455677889**************************************************88..777..************************* PP

  MATalpha_HMGbox 130 lgWklvkaeegkqkllrdadsekaalallenkeqplteldlltkileaGyi 180
                      +g  +v++ + +++l +   +  a+l ++      l++ d+++++   G++
       KKY20891.1 169 MGFAVVDNLDRSKELIK---IYDATLDST-VLTTNLSVKDIVEHCYGCGLV 215
                      ****************9...444444333.334678999******999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2454.57
//
Query:       KKY20892.1  [L=1060]
Description: putative cytoskeleton assembly control protein sla2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-77  259.8   0.0    2.2e-77  259.8   0.0    3.2  4  ANTH      ANTH domain
    3.1e-55  186.6   7.7    3.1e-55  186.6   7.7    6.4  6  I_LWEQ    I/LWEQ domain


Domain annotation for each model (and alignments):
>> ANTH  ANTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.8   0.0   2.4e-81   2.2e-77       1     273 [.      23     283 ..      23     285 .. 0.98
   2 ?   -3.9   2.9       0.6   5.4e+03     114     164 ..     396     445 ..     351     468 .. 0.54
   3 ?   -1.7   0.8      0.13   1.1e+03      71     154 ..     477     558 ..     465     594 .. 0.62
   4 ?   -1.5   0.5      0.11   9.7e+02     101     172 ..     569     659 ..     536     665 .. 0.45

  Alignments for each domain:
  == domain 1  score: 259.8 bits;  conditional E-value: 2.4e-81
                 HHHHHHHHHT-SSS---HHHHHHHHHHHCSTTS-HHHHHHHHHHHCTSS.SHHHHHHHHHHHHHHHHHS-CHHHHHHHHTT-----TT---TSHHHSTH CS
        ANTH   1 dlevavvKAtshdevPpkekhvreilvltssrekvaalvwalsrrlkltrnwvvalKaLilvHklLreGhpsveqellsarrrisellnlssfddsssk 99 
                 dl++ ++KAts++e++pk+khvr+++v+t++ +k++a +wa ++ ++ ++++v+++KaLi++Hk+L+eGhp + +e++++ +++++l+++ +     + 
  KKY20892.1  23 DLATTIRKATSIEETAPKRKHVRSCIVYTWD-HKSSASFWAGMKVQPVMADEVQTFKALITIHKVLQEGHPIAVREAQQNINWVESLARGVN----GEG 116
                 6899***************************.************************************************************....799 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHSS-...CCCS--S.....TTSHCC...C--HHHHHHHHHHHHHHHHHHHTT---GGG--SHHHHHHHHHHHHHH CS
        ANTH 100 swdysafiraYakyLderlefhrklkvdkgelereeegslvavedpner..ktlsmeklldkieklqklldrllkckptgnalsnevilaalvllvkes 196
                  ++y+++ir+Y+ +L ++l fhr+++ ++g +e+ee++sl++ +dpne+  +++++++l+d+i+ +qkl++++++        +ne++++alv+lv+es
  KKY20892.1 117 LRGYGPLIREYVFFLLQKLHFHRNHPEFNGLFEYEEYISLKSINDPNEGyeTISDLMTLQDQIDTFQKLIFSHFR-----GGANNECRISALVPLVQES 210
                 **************************************************99***********************.....6667*************** PP

                 HHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--GGG..S--GGGS-CHHCCCCCH CS
        ANTH 197 lklYkaineglinLlekffelskheadkaldiykrfskqfeelkeFyevckslgilrsle.iPelekippnllealee 273
                 +++Yk+i+++l++++  + +     ++++++++ r++ q+ +l++Fy++c++l++l+sl+ +P+l++ ppnll++++e
  KKY20892.1 211 YGIYKFITSMLRAMHTTTGD-----DEALEPLRARYDAQHFRLVKFYYECSNLRYLTSLItVPKLPQEPPNLLAEDDE 283
                 ****************9999.....7*************************************************998 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 0.6
                 HHHHHHHHHHHSS-...CCCS--S.....TTSHCC.C--HHHHHHHHHHHH CS
        ANTH 114 Lderlefhrklkvdkgelereeegslvavedpnerktlsmeklldkieklq 164
                 L+ r+++ +++ +   +++r +++   + ++ n++  l+++   d+i++lq
  KKY20892.1 396 LNARAQYEQDQLML-QQYDRRMKDLEGQLNQLNSNFALQTQSKDDQIRSLQ 445
                 22222222222222.444444444333444444444444444444444444 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.13
                 CHHHHHHHHTT-----TT---TSHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHSS-...CCCS--S.....TTSHCC..C--HH CS
        ANTH  71 psveqellsarrrisellnlssfddssskswdysafiraYakyLderlefhrklkvdkgelereeegslvavedpner.ktlsme 154
                 +s   +++sa++ i + ++l    +++ k+     +ir+ ++ L+e+ +++  ++ + ++l+re + +l++ e+ + r k +++ 
  KKY20892.1 477 KSLKLKAASAQEAIDRREKLER--EMKTKNLELADMIRERDRALHEKDRSFGGHREEVEKLKRELRFALEKAENAE-RaKGSELS 558
                 5666667777777777777777..6667788888888888888999999999888885444444444322222221.22222222 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHHHHHHHHHHSS-...CCCS--S.........................TTSHCC.C--HH.HHHHHHHHHHHHHHHHHT CS
        ANTH 101 wdysafiraYakyLderlefhrklkvdkgelereeeg....................slvavedpnerktlsme.klldkieklqklldrllk 172
                 +d  +  r+ ++ L+e  + h + + d  e++ +e++                    +l ++++++   + +++  ll++++k+ +++d++l+
  KKY20892.1 569 SDLEEALRNKTRQLEEIRSKHGERNED-HEFALKEKDeeievyksgmeqalmeleelKLSQGDTDAHL-DAQIDtVLLSNVQKINDIIDSVLQ 659
                 555555555555555544444444444.2333333222222233333333333332222222222221.222220245556666666665555 PP

>> I_LWEQ  I/LWEQ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -9.9  14.8         2   1.8e+04      83     136 ..     342     394 ..     318     413 .. 0.53
   2 ?   -3.5   6.3       1.2   1.1e+04      72     142 ..     456     523 ..     424     538 .. 0.74
   3 ?   -0.3   1.7      0.13   1.2e+03     114     151 ..     554     589 ..     527     591 .. 0.64
   4 !    4.1   0.8    0.0054        48      39     123 ..     718     803 ..     689     809 .. 0.69
   5 !    4.8   4.0    0.0035        31      38      99 ..     829     894 ..     797     905 .. 0.77
   6 !  186.6   7.7   3.5e-59   3.1e-55       1     153 []     908    1058 ..     908    1058 .. 0.98

  Alignments for each domain:
  == domain 1  score: -9.9 bits;  conditional E-value: 2
      I_LWEQ  83 katkelvkavkeakekqeeeeseeeeldisklslvqakrqemeaqv..kilkleke 136
                 ++ ++l+++ +++++ +e+++    + +  +l   q +r + ++q   ++++le+e
  KKY20892.1 342 QQRQQLLAQQQAQRDFEEQQR---LQAEQARLAQEQLMRDQYQQQTqgRMAELERE 394
                 344556666666665555543...23445555555555555554431145555555 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.2
      I_LWEQ  72 krLeaaskaVkkatkelvkavkeakekqeeeeseeeeldisklslvqakrqemeaqvkilklekeLeeark 142
                 ++L +  +++++   +l++++k+ k k+ ++   +e +d  ++ + + k++ +e    i +  ++L+e+ +
  KKY20892.1 456 EALAKLYSQLRQEHLDLLQTTKSLKLKAASA---QEAIDRREKLEREMKTKNLELADMIRERDRALHEKDR 523
                 4566666677777777777777777776665...6778888888888888888888888888888877655 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.13
      I_LWEQ 114 lslvqakrqemeaqvkilklekeLeearkkLaeirkak 151
                  s+ +++  +     ++  le++L ++ ++L+eir ++
  KKY20892.1 554 GSELSSMLSKY--NREMSDLEEALRNKTRQLEEIRSKH 589
                 44444444333..4466789999999999999999875 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.0054
      I_LWEQ  39 eeeLivaakevaastaqLvvasr..vKadknskslkrLeaaskaVkkatkelvkavkeakekqeeeeseeeeld..isklslvqakrqe 123
                 + ++i +    aasta ++  ++   + + ++k+ ++L++a+++ +++t ++ ++ ++ + +  e+   ++++d  i++  +vq   q+
  KKY20892.1 718 HADIIRTVSVFAASTADVLSNTKglLRFSVDDKKSDQLTSAARQAATSTVNFFRSLQSFRLDGLEA---TQKTDvvINNNHEVQMNLQK 803
                 556666677778888888877763345666777888999999999999999999999988887775...33444336777777766665 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.0035
      I_LWEQ  38 keeeLivaakevaastaqLvvasrvKadknskslk....rLeaaskaVkkatkelvkavkeakekq 99 
                   +eL +aa+++ ++t +L        d+ s         + +a+ aV++a+++l+ka+ + +e+ 
  KKY20892.1 829 VDQELTKAAEAIEKATERLNKLMGKNRDSYSTYELkihdSILEAAMAVTSAIAALIKAATASQEEI 894
                 567999999999999999987776666666654442333558999999999999999999888765 PP

  == domain 6  score: 186.6 bits;  conditional E-value: 3.5e-59
      I_LWEQ    1 ykknsqWteGLisAAkaVaaaanlLveaadavvqgkakeeeLivaakevaastaqLvvasrvKadknskslkrLeaaskaVkkatkelvkavkeake 97  
                  ykkn++WteGLisAAkaVa ++n+L+e+ad+v+++++++e+Liva++ vaastaqLv+asrvKa+ +sk+++rLe+as+aV  a+++lv++v+e+ +
  KKY20892.1  908 YKKNNRWTEGLISAAKAVANSTNTLIETADGVISQRNSPEQLIVASNDVAASTAQLVAASRVKATFMSKTQDRLEQASRAVGAACRALVRQVQEIIK 1004
                  9***********************************************************************************************9 PP

      I_LWEQ   98 kqeeeeseeeeldisklslvqakrqemeaqvkilklekeLeearkkLaeirkakYr 153 
                  ++++e  + e++d+ kls +++k++eme+qv+il+le++L +ar++L+e+rk +Yr
  KKY20892.1 1005 ERNKE--DGETVDYGKLSGHEFKVREMEQQVEILQLENALASARTRLGEMRKISYR 1058
                  99998..5789*******************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1060 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3002  (0.167438); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.42u 0.39s 00:00:01.81 Elapsed: 00:00:00.61
# Mc/sec: 5241.58
//
Query:       KKY20893.1  [L=909]
Description: putative uncharacterized ph domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0021   17.2   0.0      0.015   14.4   0.0    2.2  2  MMM1      Maintenance of mitochondrial morphology protein 1
     0.0044   17.4   0.0      0.075   13.5   0.0    2.4  2  PH_11     Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> MMM1  Maintenance of mitochondrial morphology protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.6e-06     0.015      94     182 ..     273     360 ..     245     398 .. 0.76
   2 ?   -0.6   0.0     0.059   5.3e+02     261     313 ..     413     463 ..     406     470 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-06
                 T--TTTS--B--HHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHGGCS-TTEEEEEEEEEE--S---EEEEEEE.EE-TTTTSS-EEE CS
        MMM1  94 yYdveshqpesLDWfnvLiaqtiaqfreealekdnilksLnealnseelpdyldkikvteidlGedfPifsncriikeskesekkrLea 182
                    ++s++     W n L+ +    + ++  ++    k + + +++ ++p+++ ki + +id+Ge  P + n r+ +  + + ++ +ea
  KKY20893.1 273 QKLHSSQEHLQTRWLNALLGRLFLALYKTPEAEAFFRKKIVKKISRVKKPNFITKISLHKIDMGEGGPFILNPRLRD-LTINGDSTIEA 360
                 444555555556799***99999999998888888899999999******************************954.44445555555 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.059
                 S-EEEEEE-SS-EEEEEEEEESSSSTT-TTHHHHHHHHHHHHHHHHHHHHBTT CS
        MMM1 261 gtalvfsflpdyrldlsvksliGsrsklqdvPkiaslvearlkkWfeercveP 313
                 +  l f+f    ++dl ++ l+ +r     v  i   +e+++k+ + e  v P
  KKY20893.1 413 SNRLWFTFETMPKIDLVIEPLVSTRQITYSV--ILRTIESKIKETIAESLVFP 463
                 56799*****************999877666..88899999999988888877 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   8.4e-06     0.075      15      52 ..     152     189 ..     140     244 .. 0.77
   2 ?    1.0   0.0     0.065   5.9e+02      13      50 ..     282     323 ..     274     337 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.4e-06
       PH_11  15 rrwfavlkdgvLeyYksekkkvvkhviklSngseaklk 52 
                 + +f+vl++g L +Y++ ++  v+hvi l    +++++
  KKY20893.1 152 NVFFVVLRHGHLMLYDDAEQIEVRHVISLEYHDVCIYG 189
                 56899***************99*******999999875 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.065
       PH_11  13 Wkrrwf.avlkdgvLeyYksekkkv...vkhviklSngseak 50 
                  ++rw+ a+l    L +Yk +++      k v+k+S+ ++  
  KKY20893.1 282 LQTRWLnALLGRLFLALYKTPEAEAffrKKIVKKISRVKKPN 323
                 5799**8899999******88887766656677777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (909 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.48
# Mc/sec: 5696.24
//
Query:       KKY20894.1  [L=620]
Description: putative splicing factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-83  280.7  19.9    1.5e-83  280.7  19.9    2.2  2  Slu7            Pre-mRNA splicing Prp18-interacting factor
    2.9e-08   33.8   2.9    2.9e-08   33.8   2.9    3.2  3  Ribosomal_L37e  Ribosomal protein L37e
  ------ inclusion threshold ------
      0.041   13.6   0.5      0.093   12.5   0.5    1.6  1  zf-CCHC_4       Zinc knuckle
       0.43   11.1   5.1        1.7    9.2   1.4    3.0  2  zf-C4pol        C4-type zinc-finger of DNA polymerase delta


Domain annotation for each model (and alignments):
>> Slu7  Pre-mRNA splicing Prp18-interacting factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.7  19.9   3.3e-87   1.5e-83       1     269 []     123     364 ..     123     364 .. 0.92
   2 ?   -2.8   1.5      0.97   4.4e+03      30      30 ..     434     434 ..     377     491 .. 0.45

  Alignments for each domain:
  == domain 1  score: 280.7 bits;  conditional E-value: 3.3e-87
        Slu7   1 ldydakRDrwngYdpeeykkvveeyekieeerkklkeeelkkkaaeekekakkkeeeaedsdsdedeeedkddededkyaeeadmagekldeksritvr 99 
                 l++dakRDrwngYdp+eyk+vveeye++e+++k++k++ ++k+                 +d       d+++++e+kyaee+dm ++     +++ +r
  KKY20894.1 123 LGWDAKRDRWNGYDPAEYKHVVEEYEELENLKKRIKSNGENKAI----------------EDG------DDETAEEAKYAEESDMGRQ-----QSTATR 194
                 58**********************************99988332................122......22457899**********5.....9***** PP

        Slu7 100 nLRiReDtAkYLlnldlnsakYDPKtRsmrdnplketskkekklfagdnfvrasgeakefaklqlfAweaeekGe..dvhlqAnPtkaellakefkekk 196
                 nLRiReDtAkYLlnldl+sakYDPKtRsm d ++   s++++ l+a++nf+rasg+a++f+++q++Awe++e+G+  ++hlqAnPt++ell k++k ++
  KKY20894.1 195 NLRIREDTAKYLLNLDLESAKYDPKTRSMVDTGAV--SDQASALVADENFMRASGDAADFERAQKYAWETQERGDvnKLHLQANPTEGELLLKKQKVES 291
                 ********************************876..5555569******************************9999********************* PP

        Slu7 197 eklkeekkksilekYggeehlkakp.kelllaqteayveysesgrvikgkekakakSkYeeDvlinnHtsVwGS 269
                 ++ k +++k++lekYgg+ehl++++ k+++++++e+yvey+e+g  ikg+ k++akSkY+eDv+innHt+VwGS
  KKY20894.1 292 SEQKMAHRKALLEKYGGAEHLQTASlKDAAITENEKYVEYDETGA-IKGEPKKTAKSKYAEDVFINNHTTVWGS 364
                 ********************98776155588*************9.8**************************9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.97
        Slu7  30 e 30 
                 e
  KKY20894.1 434 E 434
                 1 PP

>> Ribosomal_L37e  Ribosomal protein L37e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.9      0.11   5.1e+02      26      46 ..      75      95 ..      60     103 .. 0.73
   2 ?   -2.3   0.1       1.2   5.4e+03      43      51 ..     254     262 ..     252     264 .. 0.81
   3 !   33.8   2.9   6.4e-12   2.9e-08       1      24 [.     554     576 ..     554     584 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.11
  Ribosomal_L37e 26 syhvqkktCascGypsaklrk 46
                    + +++k  C +cG  ++k+++
      KKY20894.1 75 ATKFRKGACENCGAMTHKTKE 95
                    556778888888877766664 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.2
  Ribosomal_L37e  43 klrkynWsa 51 
                     + +ky W++
      KKY20894.1 254 RAQKYAWET 262
                     8899***87 PP

  == domain 3  score: 33.8 bits;  conditional E-value: 6.4e-12
  Ribosomal_L37e   1 tkGtssfGkrqkkktHilCrrCgk 24 
                     tkGtssfGkr ++ktH+lCrrC++
      KKY20894.1 554 TKGTSSFGKR-HNKTHTLCRRCDE 576
                     8*********.***********85 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.5   2.1e-05     0.093      33      48 ..      82      97 ..      79      98 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.1e-05
   zf-CCHC_4 33 fCyiCgvlGHsdkrCd 48
                +C++Cg ++H+ k+C 
  KKY20894.1 82 ACENCGAMTHKTKECL 97
                7**************7 PP

>> zf-C4pol  C4-type zinc-finger of DNA polymerase delta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1     0.081   3.6e+02      44      62 ..      82      99 ..      68     103 .. 0.77
   2 ?    9.2   1.4   0.00038       1.7      10      49 ..     542     575 ..     526     592 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.081
    zf-C4pol 44 vCqsCaqgsleeevkCdsr 62
                 C++C +  ++++ +C sr
  KKY20894.1 82 ACENC-GAMTHKTKECLSR 99
                68888.6777788888775 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00038
    zf-C4pol  10 kalCkkCrsdkqesllkllsrlkelekklneletvCqsCa 49 
                 ++ C++C      s l++ + +++  k++n+++t+C++C 
  KKY20894.1 542 QPQCQSC------SSLNMTKGTSSFGKRHNKTHTLCRRCD 575
                 6789999......47889999999***************2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1122  (0.0625802); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:00.53
# Mc/sec: 3504.70
//
Query:       KKY20895.1  [L=1719]
Description: putative dna polymerase zeta catalytic [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.9e-103  346.6   0.0   3.4e-103  345.8   0.0    1.4  1  DNA_pol_B       DNA polymerase family B
    1.4e-23   83.6   1.2    5.2e-14   52.1   0.1    2.5  2  DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
    5.4e-16   58.8   0.5    5.4e-16   58.8   0.5    2.4  2  zf-C4pol        C4-type zinc-finger of DNA polymerase delta
  ------ inclusion threshold ------
      0.055   13.6   0.2       0.21   11.7   0.2    2.0  1  XkdW            XkdW protein


Domain annotation for each model (and alignments):
>> DNA_pol_B  DNA polymerase family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.8   0.0  7.6e-107  3.4e-103       3     457 ..    1097    1543 ..    1095    1545 .. 0.91

  Alignments for each domain:
  == domain 1  score: 345.8 bits;  conditional E-value: 7.6e-107
                  HHHHHHS-HHHHHHHHHHHHHHHTTBE-B-----.--SS.-S---.....-BE----EEESS-EEEEEETTHHHHHHHHTT-STTTCE-HCCHCCT- CS
   DNA_pol_B    3 lsrvledgqqirveslLlrlakeegfilpdrtekkgkeeegYqGa.....tVlePkkglydkpvlvlDFaSLYPsiiqahNlcyttlvaseeeakel 94  
                  + +v+++g+q++vesl++r+ak e+fil+ +++ ++      q a     +V+eP++ ly +pvlvlDF+SLYPs+++a+N+cy+t++ ++ + +  
  KKY20895.1 1097 FYSVFSRGSQFKVESLMFRIAKPENFILV-SPSRRQVGG---QNAleclpLVMEPQSDLYTSPVLVLDFQSLYPSVMIAYNYCYSTFLGRVVNWRGA 1189
                  56799************************.666644444...555556679*****************************************99976 PP

                  -BTT................TEEE-TCC-EEE-TTS---HHHHHHHHHHHHHHHHHHHHH.CS--HHHHHHHHHHHHHHHHHHHHHHHHHTST.TST CS
   DNA_pol_B   95 eaed.............eyleveveprlvefvkksvregllpklLkdllakRkaikkelk.eekdefekalldkqQlalKvtaNsvYGftGva.nsr 176 
                  ++                + +++v+p++  +vk++ r++ll+k+L ++l+ R ++k+ +k ++ d++ ++ll+++QlalK++aN +YG+t+++ ++r
  KKY20895.1 1190 NKMGftdynresglldlLKDSINVAPNGIMYVKTEIRKSLLAKMLSEILETRVMVKSGMKvDKDDKTLQRLLNNRQLALKLIANVTYGYTSASfSGR 1286
                  66667889*******99999****************************************66667789*************************99** PP

                  T--HHHHHHHHHHHHHHHHHHHHHHHHT...SSGGGT-SS......T-EEEEEBSSEEEEE-S-SSHHHHHHHHHHHHHHHHT.TSTTT--EEEEEE CS
   DNA_pol_B  177 lpclalAasvTtiGRemLektkelvekkaellskllalpeeaeee.klkviYGDTDSvfielkvkdveellkigkelaeevseklfkkplklefekv 272 
                  +pc ++A+s++++GRe+Lek+ +l+++                e+ +++v+YGDTDS+f+ lk+++ e++++ig+e+a+ +++ + + p+kl+fekv
  KKY20895.1 1287 MPCSEIADSIVQTGRETLEKAIALIHAT---------------ERwGAEVVYGDTDSLFVYLKGRTREQAFDIGEEIAKTITD-MNPRPIKLKFEKV 1367
                  **************************77...............3349************************************.999********** PP

                  EEEEEEEETTEEEEEEEEESSTTS.EEEEESSGGGSTTS-HHHHHHHHHHHHHHSSS....S-HHHHHHHHHHHHHHHHHHHHTT-S-GGGG-EEEE CS
   DNA_pol_B  273 ykkllLisKKkYaglkvektskan.klliKGvdlvRrdncklvkevikkvlelllkdeteersleeglealksilkdvleeleenkvplekfvlske 368 
                  y++ +L++KK+Y+g+k+e++s+++ ++++KG+++vRrd ++  +++ ++ l+ l+++     +l++    +ks+++d  ++++++kv++++f++++e
  KKY20895.1 1368 YHPCVLLAKKRYVGFKYEHRSQKEpQFEAKGIETVRRDGTPAEQKIEEQALKILFQT----ADLSQ----VKSYFQDQCTKIMKGKVSIQDFCFARE 1456
                  ******************99999956*******************************....55555....555555666****************** PP

                  ESS.CCCSSGCCSHHHHHHHHHHHHC.SS---TTCEEEEEEBETSS.....SS-GGGTEEEHHHHHH.CCSEB-HHHHHH.TTHHHHHHHHT CS
   DNA_pol_B  369 lskepenyksknlphlevakrlkkrn.eeapevgdrisYvivekkkevkkknllaseraedpeyvle.knlpidieyYls.qllkevarlle 457 
                  ++  + + k +  p + +  r + ++ + +p++g+r+++v++         + +  +r++ p+++l+  +  +d+eyY++ +++++++r+++
  KKY20895.1 1457 VKLGTYSDKGPPPPGALISARKMVEDpRLEPQYGERVPFVVITGGP-----GARLIDRCVAPDVLLNdPQCDLDAEYYINkNIIPPLERIFN 1543
                  ***988889999999988888887776888**************97.....89999******77666378********************98 PP

>> DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.1   6.8e-11     3e-07       2     148 ..      49     241 ..      48     253 .. 0.78
   2 !   52.1   0.1   1.2e-17   5.2e-14     156     337 .]     845    1030 ..     808    1030 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 6.8e-11
                     ECTTSEEEEEEEE---EEEEEESSCGGHHHHHHHHHHHCCTTCCCEE.............EEEEEECCCCEECCTSSCCHHC.EEEEEESSTCHH CS
  DNA_pol_B_exo1   2 teegksvcvnvfgfkpyfYceapdgkeleevkeelkelyeelskkvt.............kivkvelvlkkslygyekkpvp.ylkvsvsnpnel 82 
                     te g++++v+v+g+ +y+Y+e++ + e +ev++  + l+ +++  ++              + +v lv+   +ygy+    + ++k+++ np ++
      KKY20895.1  49 TETGQKCMVHVHGVFQYCYVEYNGSLESQEVEAAKRVLHLSIDHALAvsyrrniydgksaFVAHVSLVKGVPFYGYHVG-YRfFFKIYLLNPLHM 142
                     8999*******************88887777777776666666666688999999999988999999999*******99.567************ PP

                     HHHHHHHHH...CCCCCCCCSSS--HHHHHHHHCTS-TTCEEEEE..............................TEEEEGCC--C-.SEEEEEE CS
  DNA_pol_B_exo1  83 kkirkelsp...leeivdvyeydvdylerflidnkivgfgwysvk..............................kylvraegkisncdveidcd 144
                      ++ + l++    +  ++ ye+ ++y+ + + d ++ g+++++++                              +++  +  k snc++e+d+ 
      KKY20895.1 143 TRLADLLREgavMKRKIQPYESHMQYIAQWMCDYNLYGCAYMKCQkvkfrspvpdylelsnamhqwhdrsidhsdMSDPGKLPKQSNCSIEVDVC 237
                     *******999995566999**************************77776666655555555555555555544444444444555555555555 PP

                     TTTS CS
  DNA_pol_B_exo1 145 vddl 148
                      +dl
      KKY20895.1 238 AQDL 241
                     5555 PP

  == domain 2  score: 52.1 bits;  conditional E-value: 1.2e-17
                      C..S-EEEEEEEEEETEETTSEETTTT..--EEEEEEEE.CCTC.SS.SEE......EEEEECCCTSS----EE--SS.TCSTTEEEEEESSH CS
  DNA_pol_B_exo1  156 e..pplrvlsFDIeckskkgkfpdaensedpiiqIscvl.dglgekepear......klftlrecaseeeedfeltpk.peypgvkvlefdsE 238 
                           + ++s   ++  +k   p++e+  d+i+  ++++ ++ + +e e +      ++ ++++ +     d  +++k ++   v+v  + sE
      KKY20895.1  845 HetQYMSLMSLEVHVNTRKCLTPNPEH--DEIS-CAFWCvQSDD-EEMEVNgindgtHVGIVGNSE-----DPTFADKiGKNIAVDVQQESSE 928 
                      2346677889999998888889*****..8864.3444433333.333333668888888888888.....33333331333577******** PP

                      HHHHHHHHHHHHHH--SEEEESSTTTTHHHHHHHHHHHCCTCCH.CG.SCCS..CTCEE..CCCCESEEEEEECEEEETTSEEEEHHHHHHHH CS
  DNA_pol_B_exo1  239 kelLqaflefikqydPdvitgYNidnFDlpYilnRakelykvkl.sklgrln..kggrs..kvseigfskqarekvkisgrihlDlyrvvkrk 326 
                       +lL ++ ++++qydPd++tgY ++n  + Y+ +Ra+  y +++ + ++r++  ++gr+  + ++ gf+  +++ v++ gr  + + r ++ +
      KKY20895.1  929 LDLLLRIAQIVRQYDPDILTGYEVHNSSWGYLIERARVKYDYNFcDEISRMRsqSHGRFgkEADRWGFN--QTSTVRVTGRHTINIWRAMRSE 1019
                      *************************************77765543899999998777761144555555..99999999999999******** PP

                      SSSSG-SHHHH CS
  DNA_pol_B_exo1  327 lklpsYkLnav 337 
                      l+l  Y+ ++v
      KKY20895.1 1020 LNLLQYTMENV 1030
                      *****999887 PP

>> zf-C4pol  C4-type zinc-finger of DNA polymerase delta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2       1.2   5.4e+03      22      59 ..    1415    1452 ..    1410    1456 .. 0.77
   2 !   58.8   0.5   1.2e-19   5.4e-16       1      70 []    1598    1681 ..    1598    1681 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
    zf-C4pol   22 esllkllsrlkelekklneletvCqsCaqgsleeevkC 59  
                  e++lk+l ++++l +  +  +++C ++++g+++ +  C
  KKY20895.1 1415 EQALKILFQTADLSQVKSYFQDQCTKIMKGKVSIQDFC 1452
                  5578888888999999999999**99988888766667 PP

  == domain 2  score: 58.8 bits;  conditional E-value: 1.2e-19
    zf-C4pol    1 ClvCk.........eklk.....kalCkkCrsdkqes..llkllsrlkelekklneletvCqsCaqgsleeevkCdsrdCpvfYeR 70  
                  Cl+C+         +  +      +lC +C s  +    ll+l++rl+++e+++++l ++C+sCa+  + eevkCds+dCpv++eR
  KKY20895.1 1598 CLNCRsplpqitqpT--SissipIPLCPSCLSPGHLPrtLLSLRARLNATETRYQNLLKICRSCAGLGFGEEVKCDSLDCPVYFER 1681
                  9****7776655441..1556779******955443346*************************99999***************98 PP

>> XkdW  XkdW protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   4.6e-05      0.21      30      76 ..     775     820 ..     758     855 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.6e-05
                 .EEEEEE-SSS----HHHHHHHHHHHHHS----XXXXXXXXXXXXXX CS
        XkdW  30 gsyieeWnlraPkPtekelktwWeelqsnpayepPvqldllaqelsk 76 
                    i++W++  P P++ e++ w e+   + +  + v+ +l++++ls+
  KKY20895.1 775 LCRINTWHIAEPPPSRPEVERWLEKDFATRKSRE-VKEQLTSRKLSQ 820
                 3569******************999887766655.477889999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1719 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.46
# Mc/sec: 11178.40
//
Query:       KKY20896.1  [L=1533]
Description: putative rna-directed rna polymerase (sad-1) [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.2e-176  588.0   0.0   3.1e-176  587.5   0.0    1.2  1  RdRP      RNA dependent RNA polymerase
    4.9e-05   23.1   0.0    0.00015   21.5   0.0    1.9  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
  ------ inclusion threshold ------
       0.11   12.9   0.4       0.35   11.3   0.4    1.8  1  ARL17     ADP-ribosylation factor-like protein 17


Domain annotation for each model (and alignments):
>> RdRP  RNA dependent RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  587.5   0.0  5.2e-180  3.1e-176       1     585 [.     454    1037 ..     454    1038 .. 0.92

  Alignments for each domain:
  == domain 1  score: 587.5 bits;  conditional E-value: 5.2e-180
        RdRP    1 vtptriilegpeleksnrvlRrfkegsdrFlrvkfpdedge...rldse..dgeellkervkkvlkegiviagrkfeflafsdsqlrehsvwffapf 92  
                  vtpt+i +++p++e +nrv+R++++++drFlrv+f+d++ +   r++ +  ++++++++rv+++l++gi ++gr++efla+ +sqlreh+++ff++ 
  KKY20896.1  454 VTPTTIQINEPTVEVTNRVIREYQHHADRFLRVRFEDDEFRgmrRIHGNdgETMNEVYTRVHRTLSSGIIVGGRRYEFLAYGNSQLREHGAYFFSS- 549 
                  79***********************************9888777777775555999**************************************84. PP

        RdRP   93 eeegerisaeeirkwlgdfenisqsvaKyaaRlglalSttrptvvkvereqii.ieeidDv.kneekdiylftDGvGliSrelarkiakklglkk.a 186 
                       ++sa +ir+w+g+f+++ + +aK+aaR+g+++Stt++     + e ++    ++D+ +n+    y+ftDGvG+iS+ la+++  +l++k  a
  KKY20896.1  550 ---SATLSAASIRAWMGTFDHE-KIIAKHAARIGQCFSTTKAV-RGARVELVRkADLVPDIeRNG----YTFTDGVGKISPFLANMVSMELNIKAhA 637 
                  ...3469************998.*******************3.443444444233378985666....9***********************9897 PP

        RdRP  187 eelPsafQiRigGaKGvlavdkrlkpek.....ielrpSqiKfkseeddsekrtleivkvsskpkpayLnrqlikiLedlgvpeevflellkealee 278 
                     Psa+Q+R+gG+KGvl+v + +++ +     i lr+Sq Kf+s +       lei+++s++   a+Lnrqli +L+ lgv++evfl+ ++++++ 
  KKY20896.1  638 GGSPSAYQFRLGGCKGVLVVTSPEDR-SvkwngISLRKSQYKFDSTH-----HGLEIIRHSEFW-GASLNRQLILVLSALGVEDEVFLRRQEQEIKG 727 
                  789*****************966622.135678**********6654.....46**********.******************************** PP

        RdRP  279 lrealkdagaaaellkkagdpskleellaelldsgfdpseldpflrsllkalvkeslrklkekarIpvpksatllgvaDetgvLk............ 363 
                  l+eal+d   a++ l +++dp++    +a+++  gf+ s  dpf+ s+l+ +++++ r+lk++a+++++k+a+llg++Det++L+            
  KKY20896.1  728 LKEALQDDATAISKLYEFVDPNHAVAAIANVVTNGFRSS-GDPFTISMLRLWRAWRTRDLKSRAKLKIQKGACLLGCIDETATLRghfdtnqpgpna 823 
                  ************************************766.47******************************************************* PP

        RdRP  364 ........egevfvqlsealdqedeksktkllkgdvlVtRnPalhpgDiqvvkavdvpelrhlkdviVFstkGdrslaselsGGDlDGDkywViwdp 452 
                           +e+f+q+s+     ++ ++ ++++g +l+tRnPalhpgDi+vvkav+ p+l+h+kd +V++++Gdr+l  ++sGGDlDGD+y+Viwd+
  KKY20896.1  824 sheekvkaLPEIFLQVSRL----ESPGTVDVIEGICLLTRNPALHPGDIRVVKAVNAPQLKHVKDLVVLPQTGDRDLSGMCSGGDLDGDDYLVIWDQ 916 
                  ****************996....2333579999**********************99**************************************** PP

        RdRP  453 e.lefapakpsneepadyeea.kpkeldrevtvediadffveymksdvlGlisnahlaiadq.eegiddpkclkLaelhskaVDypKtGipvdkkei 546 
                  e l   p+  +n+ p+dy+ a +pk++  +vt +di  ffv+ymk+d lG+i+ ahla+ad  +egi+++kcl+La lhskaVDypKtG ++    +
  KKY20896.1  917 EyL---PK-IWNHAPMDYT-ApPPKTVATNVTPSDIMRFFVQYMKNDILGRIAYAHLAWADYlDEGINSKKCLELAALHSKAVDYPKTGQAAI---M 1005
                  *55...54.78999*****.87999999*****************************************************************...7 PP

        RdRP  547 prelkkpkekPdfkekekkekakkpyykskkilgkLyre 585 
                    +l +p+ +P+f++k+      +++y+s+kilg+L++ 
  KKY20896.1 1006 DLSL-NPRLWPHFMQKK------SRTYRSQKILGRLFDG 1037
                  7777.6889*****644......579**********986 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.5e-08   0.00015       1      47 [.      37      83 ..      37      87 .. 0.96

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.5e-08
                EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEES CS
       RRM_1  1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFe 47
                + V++Lp+++t  +L   F++ G++ +i+++ ++ g+  g+a ++F+
  KKY20896.1 37 VRVSGLPESITTYDLWNTFQNEGQVDNIEIFVNSSGRREGTAKIRFK 83
                679*******************************************7 PP

>> ARL17  ADP-ribosylation factor-like protein 17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   5.8e-05      0.35      25      58 ..      19      53 ..       7      55 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.8e-05
       ARL17 25 dsilPhqsPawGPwGckdl.ssgfPsfltssilwk 58
                 + lPh  Paw  w   d+  sg+P  +t+  lw 
  KKY20896.1 19 STSLPHLRPAWHDWDVLDVrVSGLPESITTYDLWN 53
                4459**************9459******9999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.96u 0.33s 00:00:01.29 Elapsed: 00:00:00.52
# Mc/sec: 8866.30
//
Query:       KKY20897.1  [L=713]
Description: hypothetical protein UCRPC4_g03973 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
          8    6.7  15.2        0.1   12.8   5.6    2.6  3  DUF2508         Protein of unknown function (DUF2508)


Domain annotation for each model (and alignments):
>> DUF2508  Protein of unknown function (DUF2508)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   5.6   5.6e-06       0.1       6      59 ..     485     539 ..     483     545 .. 0.91
   2 ?   -2.8   0.5       0.4   7.2e+03      18      34 ..     630     646 ..     612     662 .. 0.52
   3 ?   -2.1   1.3      0.25   4.4e+03      14      42 ..     647     675 ..     627     682 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.6e-06
     DUF2508   6 kkgklkke.edeeLleeIektkeelesakslfensvDlsdeliyqlklaeakYeF 59 
                 kk+ +++e  ++++++++e+++ ++es++s  ++ +   +e  +  kl++a Y+ 
  KKY20897.1 485 KKQRIETEhRNDDIMQQLEQAQSQIESCRSENNALTQTVQETNAAQKLQKAEYDL 539
                 6779999999***************************99**************85 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.4
     DUF2508  18 LleeIektkeelesaks 34 
                 L ++ e +k + +++++
  KKY20897.1 630 LADSNEAAKLAAQHQEN 646
                 33333333333333333 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.25
     DUF2508  14 edeeLleeIektkeelesakslfensvDl 42 
                 +  +L+  +ek+ ++  + k+ +e++ Dl
  KKY20897.1 647 QLSKLVFKLEKAHKDKTALKRDLEKARDL 675
                 55566666666666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1937  (0.108037); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.54
# Mc/sec: 3992.96
//
Query:       KKY20898.1  [L=489]
Description: putative oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-59  201.7   0.0      2e-59  201.3   0.0    1.2  1  FAD-oxidase_C  FAD linked oxidases, C-terminal domain
    1.7e-33  115.3   0.0      3e-33  114.5   0.0    1.5  1  FAD_binding_4  FAD binding domain
  ------ inclusion threshold ------
      0.029   13.1   0.0      0.058   12.1   0.0    1.4  1  SepSecS        O-phosphoseryl-tRNA(Sec) selenium transferase,
       0.16   11.9   0.1        2.9    7.8   0.0    2.6  2  pXO2-34        Family of unknown function


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.3   0.0   4.4e-63     2e-59       1     250 []     222     463 ..     222     463 .. 0.97

  Alignments for each domain:
  == domain 1  score: 201.3 bits;  conditional E-value: 4.4e-63
                    --SEEEEEEEEESSHHHHHHHHHHHHHHT---SEEEEE-HHHHHHHHHTS-SSTTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT-EEEEE. CS
  FAD-oxidase_C   1 lpearavalvafpsfeaavkavreiaqagiipaalelmdkkaldlveatkgakkglpdeeealllvefegddeeeaeeelealveaileatgaadv 96 
                    +p++++v++++fp++++a++++ +i++ag+++aa+el+d+++++++++   +  + +  e ++l+++f+g+  + ++ +++    +i+ a+ a+d+
     KKY20898.1 222 IPQETRVGVATFPTIRDAASTAMQIIRAGVPVAAMELLDEVQMNVINRAGAV--SRRYAEVPTLFFKFSGTT-AGVQDNIR-ISRKIATANNAEDL 313
                    59**************************************************..9999**************.89999999.99************ PP

                    .........ETGGGGGGGGHHHHHHHHHCTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHEEEEEEEEEETTEEEEEEEEEEE..--TT--THHH CS
  FAD-oxidase_C  97 lvaqdeaeaealwkaRkaalpylrdallkagvavlseDtsvPvsrladlvrdikalldkyglevvlfgHagdgnlhlyilfdladeaeeeraeklv 192
                     +a++e+e +alw aRk al+ + ++ +++g+ v+s+D++vP+srl+++++  k+ +d+ gl +++ gH+gdgn+h  i++++    e++++e +v
     KKY20898.1 314 IFAKNEEEGKALWTARKEALWSMMSL-REPGSEVWSTDVAVPISRLPEIIEISKKEMDELGLFASILGHIGDGNFHESIMYQP---HEKAAVEHVV 405
                    *********************77777.******************************************************77...799999999* PP

                    HHHHHHHHHTT-----------------------THHHHHHHHHHHH-TT--BSTT-- CS
  FAD-oxidase_C 193 devvdlavelgGsisgEHGvGldkkaylerekgeeglalmrriKaalDPkgiLNPgkv 250
                    +++v +a+e+ G+++gEHG+Gl kk+ l +e g+e++a+m+ iK+ lDP ++LNPgk+
     KKY20898.1 406 HRMVNRALEMEGTVTGEHGIGLGKKQGLVKELGPETIAVMQTIKKSLDPYWLLNPGKI 463
                    ********************************************************96 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.5   0.0   6.7e-37     3e-33       1     138 [.      49     185 ..      49     186 .. 0.96

  Alignments for each domain:
  == domain 1  score: 114.5 bits;  conditional E-value: 6.7e-37
                    EEEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEE.STTCSCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTT CS
  FAD_binding_4   1 paavvrpeseeevaaalrlaneaglpvlvrGgGssll.gqavatggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsg 95 
                    p av++p+++eev+ + ++++++++p+++++gGssl    a  +gg+ +d+  +++i+ + ++++ +++++ v++ +l+e ++ +gl+++++pg  
     KKY20898.1  49 PIAVAYPRNTEEVSQIAKVCTKYRVPMVPFSGGSSLEaNFAAPFGGICIDFAFMDHIIAVHDKDMDVVLQPAVQWMELNEKIKHTGLFFPVDPGP- 143
                    679**********************************77777*********88*************************************99987. PP

                    CGSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4  96 ipgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrl 138
                     ++ +GG++ t  +G+++ +yG++rd+v++l+vvl+dG+++++
     KKY20898.1 144 -SAKIGGMVGTSCSGTNAFRYGTMRDWVVNLTVVLSDGRIIKT 185
                    .588************************************987 PP

>> SepSecS  O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.3e-05     0.058     164     189 ..      51      76 ..      17      78 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.3e-05
                 STTTTB----HHHHHHHHHCCT--EE CS
     SepSecS 164 sffaprspDdvkeiakiCaeydvPhl 189
                  + +pr  ++v +iak+C +y vP +
  KKY20898.1  51 AVAYPRNTEEVSQIAKVCTKYRVPMV 76 
                 5679********************86 PP

>> pXO2-34  Family of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.11   4.8e+02      52      67 ..     174     189 ..     171     193 .. 0.83
   2 ?    7.8   0.0   0.00066       2.9      46      72 ..     300     326 ..     288     331 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.11
     pXO2-34  52 tavesggvifAKrsks 67 
                 t+v s+g+i+  r+++
  KKY20898.1 174 TVVLSDGRIIKTRRRP 189
                 8999999999888876 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00066
     pXO2-34  46 lfekIktavesggvifAKrsksaqkLl 72 
                 + +kI ta +++ +ifAK +++++ L 
  KKY20898.1 300 ISRKIATANNAEDLIFAKNEEEGKALW 326
                 6689***************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3260.78
//
Query:       KKY20899.1  [L=222]
Description: putative homoserine acetyltransferase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-09   36.7   0.1    6.2e-09   35.9   0.0    1.4  2  Abhydrolase_1  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.017   14.4   0.0      0.019   14.2   0.0    1.1  1  Hydrolase_4    Serine aminopeptidase, S33
      0.097   13.3   0.0        0.1   13.2   0.0    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0     1e-12   6.2e-09      24     108 ..      71     161 ..      61     178 .. 0.85
   2 ?   -2.2   0.0      0.43   2.6e+03      68      84 ..     177     193 ..     161     194 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1e-12
                    HHHHTTSEEEEEEETTSTTSSSTTTGB..CHHSHHHHHHHHH...HH.HHHCTTSSEE.EEEETHHHHHHHHHHHHHGGGEEEEEEESECS CS
  Abhydrolase_1  24 aLakdgfdvillDlrGvgySspapacin.ddygtasvaddld...ri.ldalgddklt.lvGhSmGGmialayaaeyperVkalvllgaid 108
                    aL+ +++++i++ l G+g+S  ++++++ + ++t+++ d ++   ++  +++g+ +l  ++G+SmG  +  ++a +yp+ ++ ++  ++++
     KKY20899.1  71 ALNPEKYFIIITALFGNGESISPSNSPHiSPFPTCTFYDNVRaqhALlTQHFGVNHLRaVLGWSMGAGQTYQWATQYPDFMDLIIPFCGSA 161
                    566669***********************99***********876448*******************************998887666644 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.43
                    HHCTTSSEEEEEETHHH CS
  Abhydrolase_1  68 dalgddkltlvGhSmGG 84 
                    + lg +k+   G +mGG
     KKY20899.1 177 ALLGAKKVSSAGVCMGG 193
                    56899999999****99 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.2e-06     0.019      61     116 ..     110     166 ..      68     210 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.2e-06
  Hydrolase_4  61 Dlaafvekvkeehpel.plfllGhSmGGliallyllrypdkvaglilsaPalkikak 116
                   ++a    + ++ +    + +lG SmG+  + +++++ypd ++ +i ++   k  ++
   KKY20899.1 110 NVRAQHALLTQHFGVNhLRAVLGWSMGAGQTYQWATQYPDFMDLIIPFCGSAKTSEH 166
                  44444333333333334679********************88877755555555544 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.7e-05       0.1      23      86 ..      73     147 ..      24     206 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
                    HCCTCEEEEE--TTST...........S-GGCS--HHHCHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC CS
  Abhydrolase_6  23 laagvhvlapDlpGhG...........rsdpppldledladlaalldelaagggpvvlvGHSlGGalalaaapla 86 
                     ++ + ++++ l G+G           ++ p  + ++++++++all+   ++ +   ++G+S+G+    ++a + 
     KKY20899.1  73 NPEKYFIIITALFGNGesispsnsphiSPFPTCTFYDNVRAQHALLTQHFGVNHLRAVLGWSMGAGQTYQWATQY 147
                    3444555777778888666665555544455668888899998888888764444488*******9888855444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1592.48
//
Query:       KKY20900.1  [L=321]
Description: putative polyamine transporter 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.8    9.5   9.0       0.26   11.1   2.5    2.3  2  Amastin   Amastin surface glycoprotein


Domain annotation for each model (and alignments):
>> Amastin  Amastin surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.5    0.0078   1.4e+02     129     146 ..     176     192 ..      95     199 .. 0.77
   2 ?   11.1   2.5   1.4e-05      0.26      64     125 ..     203     270 ..     195     283 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.0078
     Amastin 129 sttakygaGFgLlvvawl 146
                 s t ++g GF L+++a+l
  KKY20900.1 176 SGT-TFGLGFLLIMMAML 192
                 444.7********99987 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 1.4e-05
     Amastin  64 aaqafsiisilvla..aalllsvllllccsslkwvclllnivsvvtllivwalmvavyy....krfCd 125
                 aa+a ++ s++ ++  a l l  + +++   ++w+c +l+++++v+++i+  ++    +    ++fC 
  KKY20900.1 203 AASAQAVASCCRSVfgALLPLAAAKMFSTLGIRWACATLGFIALVVTCIPFGFVRWGERirggSKFCR 270
                 7889999999865510555566668888899******************9887754444455556665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1452  (0.0809861); expected 358.6 (0.02)
Passed bias filter:                      796  (0.0443973); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 2120.14
//
Query:       KKY20901.1  [L=136]
Description: putative prefoldin subunit 4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.4e-25   87.0   1.1    8.8e-25   86.7   1.1    1.1  1  Prefoldin_2  Prefoldin subunit
  ------ inclusion threshold ------
      0.027   14.4   1.5      0.063   13.2   0.5    1.9  2  Prefoldin    Prefoldin subunit
      0.046   13.4   2.5        0.4   10.3   0.3    2.1  2  Tex_N        Tex-like protein N-terminal domain
      0.046   12.0   0.4      0.054   11.8   0.4    1.0  1  Gp58         gp58-like protein
      0.051   13.9   2.4       0.12   12.7   2.3    1.7  1  THOC7        Tho complex subunit 7
      0.054   13.8   0.1      0.077   13.3   0.1    1.2  1  DUF4854      Domain of unknown function (DUF4854)
       0.13   12.4   2.9        3.4    7.8   0.2    3.1  3  DUF3660      Receptor serine/threonine kinase


Domain annotation for each model (and alignments):
>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   1.1   3.4e-28   8.8e-25       1     105 [.      26     130 ..      26     131 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 3.4e-28
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2   1 qelinkfqqlqqqlqqlaqqikqletqlkelelvleelelldedtkvyklvGdvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelkee 98 
                  q  in+f++l+q+ + l  +++ + +++++le++++elel+ded+ v++++Gd++++++++e++e+L +  e ++ke+++le++l++++ e+ elk +
   KKY20901.1  26 QGRINRFSRLHQREKVLIDEVAVKGKDKEDLEEISTELELADEDELVPYKIGDTFMHVPLPEAQEMLSQATEAIDKEVSELEESLQSVRDEMGELKVK 123
                  5689********************************************************************************************** PP

                  HHCCTS- CS
  Prefoldin_2  99 lqkklqq 105
                  l+++++ 
   KKY20901.1 124 LYARFGR 130
                  ****985 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       0.2   5.1e+02      24      48 ..      55      79 ..      43      92 .. 0.70
   2 ?   13.2   0.5   2.5e-05     0.063      72     113 ..      82     123 ..      77     127 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.2
                HHHHHHHHHTT.-TT-EEEEEEETT CS
   Prefoldin 24 ktletlktlkkedegkevlvplgag 48
                +++e+  +l+ +de+++v +++g++
  KKY20901.1 55 DLEEISTELELADEDELVPYKIGDT 79
                3344444444588888888888876 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.5e-05
                 EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  72 eksleeAiellkkkleelekqlekleeeleklkdqittlean 113
                  ++l eA e l +  e ++k + +lee+l+  +d++ +l ++
  KKY20901.1  82 HVPLPEAQEMLSQATEAIDKEVSELEESLQSVRDEMGELKVK 123
                 566777777777777777777777777777777777766655 PP

>> Tex_N  Tex-like protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.3   0.00015       0.4      34      98 ..      12      74 ..      10      79 .. 0.82
   2 ?    3.6   0.2     0.018        47     141     170 ..      86     115 ..      64     124 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00015
       Tex_N 34 eatggldeeqlreieerleylrelekrkeevlksieeqgklteeLkkkieaaktleeledlylpY 98
                e tg  d e  re + r++++ +l++r++  +++++ +gk +e+L++ i++  +l++ ++l  pY
  KKY20901.1 12 ESTGFADAEVTREDQGRINRFSRLHQREKVLIDEVAVKGKDKEDLEE-ISTELELADEDELV-PY 74
                889999*************************************9975.55544555444443.55 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.018
       Tex_N 141 ksaeealegardIiaeeisedaelrkklre 170
                 ++a+e l++a++ i +e+se +e  +++r+
  KKY20901.1  86 PEAQEMLSQATEAIDKEVSELEESLQSVRD 115
                 455555555555555555555555555554 PP

>> Gp58  gp58-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.4   2.1e-05     0.054      47     175 ..       2     133 ..       1     134 [. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.1e-05
        Gp58  47 fnqlmiergdkatdyvaPvvveGsgestGlfksleeal.sqlkelnLeLtdtkn.snLWskiklnnkgmlreyad.deikteivesaegiaerisedtd 142
                 +++ mi ++d+ t++    v+   +  +  f  l +     + e+ ++ +d ++  ++ + + l+++  l+ y   d+     + +a+++  + +e  d
  KKY20901.1   2 LSKRMISKEDESTGFADAEVTREDQGRINRFSRLHQREkVLIDEVAVKGKDKEDlEEISTELELADEDELVPYKIgDTFMHVPLPEAQEMLSQATEAID 100
                 5788999*********999998777777777766554303478999999999983467889**********997515666666999************* PP

        Gp58 143 kklalinetieGirreyqdadrelsssyqagie 175
                 k+++ ++e+++ +r e  +   +l++++  +i+
  KKY20901.1 101 KEVSELEESLQSVRDEMGELKVKLYARFGRSIN 133
                 ****************************99987 PP

>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.3   4.6e-05      0.12      63      99 ..      89     125 ..      25     127 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.6e-05
       THOC7  63 akanerereryeaekeeieseieavreeieelkaqLe 99 
                 +++ ++  e +++e +e+e+++++vr+e+ elk++L 
  KKY20901.1  89 QEMLSQATEAIDKEVSELEESLQSVRDEMGELKVKLY 125
                 6788888999999999******************996 PP

>> DUF4854  Domain of unknown function (DUF4854)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1     3e-05     0.077      18      89 ..      53     123 ..      47     132 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3e-05
     DUF4854  18 kssledsGislevtaegntLvyeytlskslddaaldalkealaesldsqastfeslakqlkkevkv.enpivv 89 
                 k+ le+   +le +a++++Lv  y++ +++    l++++e+l++++++ ++ +++l ++l++  ++ ++ +v 
  KKY20901.1  53 KEDLEEISTELE-LADEDELV-PYKIGDTFMHVPLPEAQEMLSQATEAIDKEVSELEESLQSVRDEmGELKVK 123
                 566677443444.68999998.7******99999999999999999999999999999988765554555544 PP

>> DUF3660  Receptor serine/threonine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.039        99      22      32 ..       3      13 ..       1      18 [. 0.89
   2 ?   -0.5   0.1      0.54   1.4e+03       6      13 ..      25      32 ..      24      35 .. 0.88
   3 ?    7.8   0.2    0.0013       3.4      11      37 ..      39      65 ..      36      66 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.039
     DUF3660 22 srrylsgEnkt 32
                s+r++s+E+++
  KKY20901.1  3 SKRMISKEDES 13
                89******976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.54
     DUF3660  6 dqvRsqdl 13
                dq+R++++
  KKY20901.1 25 DQGRINRF 32
                9****998 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0013
     DUF3660 11 qdllmnevVissrrylsgEnktedLEL 37
                +++l++ev +  ++ ++ E+ + +LEL
  KKY20901.1 39 EKVLIDEVAVKGKDKEDLEEISTELEL 65
                467***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1175  (0.0655363); expected 358.6 (0.02)
Passed bias filter:                      717  (0.0399911); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1070.52
//
Query:       KKY20902.1  [L=792]
Description: putative wd domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-16   58.9   0.0    9.5e-16   58.1   0.0    1.4  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    1.1e-07   31.6   0.2    1.9e-07   30.7   0.2    1.3  1  Glyco_hydro_16  Glycosyl hydrolases family 16
    1.4e-06   28.9   0.4       0.15   13.0   0.0    3.1  2  WD40            WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   1.6e-19   9.5e-16     159     231 ..       2      81 ..       1      81 [. 0.93

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 1.6e-19
                   HGGGTEEEEEEEE--BHCTGGGGSTT.......HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEEST CS
  adh_short_C2 159 lgpkgiRvNavspgpikTlaasgikg.......fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDg 231
                   ++ kg+R N+v pg++ T+ ++++++        de ++  e++ p+gr+g++ +va+a+lfL+sdea+yitGq+++vDg
    KKY20902.1   2 YAGKGVRLNSVVPGLMYTPYTEQLAErygagsgRDEYMKMREQQVPMGRMGDAWDVAHAVLFLVSDEAEYITGQEIIVDG 81 
                   6789****************9999876766777899*******************************************8 PP

>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.2   3.2e-11   1.9e-07      31     162 ..     528     659 ..     492     677 .. 0.74

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 3.2e-11
                     EEEEEE.CCEESSEEEEEEEE.---STTEEEEEEEETGGTSTTEEEEEEEETT-TTE........EEEEEEBTTBSGEEEEEETSS-TTTS-EEE CS
  Glyco_hydro_16  31 gsriks.kksflyGkvearik.aaksaGvvtafylssedekahdEiDiEflGndtgk........vqtnvygkGkgkrekrlslwfdptedfHtY 115
                      ++i++   ++l+G +    k ++ + G v +f+      +++ EiDiE++   ++          +  +y +G+   + +ls+ f   ++fH  
      KKY20902.1 528 IAGIQTkVLDILHGSFRTVFKiTGATGGSVGSFFWYH---NDSSEIDIEIVTDGNSIvnntinytEHPSLYPNGQRIPNATLSVPFTDYTNFHAH 619
                     6788996679***********99***********987...79*********876555333322222233345555444999************** PP

                     EEEEETTEEEEEETTEEEEEEESSHHHHT.--EESEEEEEEEEEEBS CS
  Glyco_hydro_16 116 aieWtpdkikfyVDgkpvrtltkkeaeevkyPqftpmkvavslwpgs 162
                      ++ tp++ ++y+Dg+ ++    +       P+  p +++++lw+ +
      KKY20902.1 620 RFDCTPQTATYYLDGIYMHHDHHN------VPH-YPGSLQLNLWADG 659
                     ****************99876555......355.5567777777544 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.6e-05      0.15      19      38 .]     127     146 ..     104     146 .. 0.78
   2 !   12.7   0.1   3.1e-05      0.19       8      38 .]     179     211 ..     175     211 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.6e-05
                 ETTSSEEEEEETTSEEEEEE CS
        WD40  19 spdgawlasGsdDgtvriWd 38 
                    g+ las+++Dgt+ iWd
  KKY20902.1 127 EAGGQILASCGRDGTIAIWD 146
                 5568889************9 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.1e-05
                 ESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                 + H +++t+l+f+p+ +  l+sGs Dg v ++d
  KKY20902.1 179 ESHnDDITDLQFHPSLPNrLLSGSTDGLVSLFD 211
                 469666************989********9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 5898.69
//
Query:       KKY20903.1  [L=355]
Description: putative malate l-lactate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     4e-121  404.2   0.0   4.5e-121  404.1   0.0    1.0  1  Ldh_2     Malate/L-lactate dehydrogenase


Domain annotation for each model (and alignments):
>> Ldh_2  Malate/L-lactate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  404.1   0.0  2.5e-125  4.5e-121       2     332 ..      13     341 ..      12     342 .. 0.98

  Alignments for each domain:
  == domain 1  score: 404.1 bits;  conditional E-value: 2.5e-125
                 -HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHTT-GGGTGGGHHHHHHHHHTTSSBSS---EEEEEETTEEEEEETTE-HHHHHHHHHHHHHHHHH CS
       Ldh_2   2 saeelralveavleaagvseedAeivadvlveadlrGvdsHGvarlpryverlkkgkinpkaepevvketpavavvDgdnglGqvvakkamelaiekak 100
                 sa+++ +++++vl+  gv   +A+i+a++lv+adlrG+d+HGv+r+p+y+er+++g ++p+a+p++ + tp+va+v+g+n++G+++a++++e+aie+ak
  KKY20903.1  13 SADQVLKFTRDVLTGNGVGVPEAKIIAECLVAADLRGIDTHGVNRIPSYMERIRQGVLDPHAKPTLKEITPVVAHVEGHNAFGFLAATMGIEKAIEMAK 111
                 78999********************************************************************************************** PP

                 HHSEEEEEEEEEE--SSHHHHHHHHHHTTSEEEEEEEESSEB--TTBSS--BE--EEEEEEEETTSSEEEEEEESBSS-HHHHHHHHHCT---STTSEE CS
       Ldh_2 101 ehGigivavrnsnhfGaagyyaemaaeaGligiaftnssplvaptggkeavlGtNPiafaaPakeeepfvlDmAtSvvargkievaarkgkpiPegwal 199
                  +Gig+v v++snhfG+ ++ +++a++a+l++++ftnssp+++++ggk +++G  P+a++aPa++++pf+lDmA S++argki +a+r+g++iP +wal
  KKY20903.1 112 VFGIGMVCVKDSNHFGMSAWIVQKAIDADLMSLVFTNSSPALPVWGGKSKLVGVSPLACGAPAGKTKPFILDMAPSIAARGKIYKAKRRGEKIPLDWAL 210
                 *************************************************************************************************** PP

                 ETTSSEES-HHHHHCCCEE-BTTTHHHHHHHHHHHHHHTCTTTS-HGGGSSSSSSCTSS-SSEEEEEEEEEGGGTT.HHHHHHHHHHHHHHHHTS-BST CS
       Ldh_2 200 DadGnpttDPaaaleggallplGghKGyglalmvelLagvLsgaatgkevsgsedeekkpaklghffiaidpeafgdaeefkervdalldelrasppae 298
                 D dGnpt+DP++ale g++lp+Gg KG++la+m+++++gvLsg++++ +v++ +d++k++   ghf++ai+p+ f + +efk+r+d l++++ +s+++ 
  KKY20903.1 211 DFDGNPTDDPDRALE-GVMLPMGGPKGSALAIMMDVFSGVLSGSNFAGHVTNPYDPSKPAGV-GHFIVAIKPDLFFSLDEFKDRMDYLYQRVVDSEKRA 307
                 ***************.**************************************88877665.************************************ PP

                 TTSS---TTHHHHHHHHHHHHH-EEEEHHHHHHH CS
       Ldh_2 299 gadevllPGereaaaraerlkeGipldeavleel 332
                 g+d++++PGe e+ ++++r+ eGip+++a +e+l
  KKY20903.1 308 GFDRIYFPGEIEQLTQEKRMVEGIPYSSAEVEAL 341
                 *****************************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 2210.66
//
Query:       KKY20904.1  [L=538]
Description: putative 35 exonuclease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       851  (0.047465); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 3454.98
//
Query:       KKY20905.1  [L=442]
Description: putative gdp-mannose pyrophosphorylase a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-30  105.7   0.0    4.1e-30  105.2   0.0    1.2  1  NTP_transferase  Nucleotidyl transferase
    3.7e-09   36.0   6.6    6.4e-07   28.8   0.0    3.4  3  Hexapep          Bacterial transferase hexapeptide (six repea
    2.5e-08   34.5   0.0    4.6e-08   33.6   0.0    1.5  1  NTP_transf_3     MobA-like NTP transferase domain
  ------ inclusion threshold ------
      0.013   14.4   0.2        3.8    6.3   0.0    2.2  2  Fucokinase       L-fucokinase
      0.051   13.3   0.0      0.089   12.5   0.0    1.3  1  IspD             2-C-methyl-D-erythritol 4-phosphate cytidyly
       0.15   11.6   0.1       0.25   11.0   0.1    1.2  1  DUF2968          Protein of unknown function (DUF2968)


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.0   1.4e-33   4.1e-30       1     192 [.      19     212 ..      19     231 .. 0.88

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 1.4e-33
                      EEEEE--S..--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHH.TT-SEEEEEEETTTHHHHHHHHTTSGGGT...SEEEEEEESS--BGGH CS
  NTP_transferase   1 kavILaGG..sGtRLwPLtrtlakklvpvlgkerliqatlsrlan.sgieeiivvltqehsflveeqlkegskfg...vevlialepegkgtAd 88 
                      kavIL+GG  +GtR++PL+ +++k+l+ v+g  ++i ++l+++++  +i+e ++ + ++++  +++ +++ +  +   ++++++ e +  gtA+
       KKY20905.1  19 KAVILVGGpsRGTRFRPLSLDTPKPLFDVAGH-PIIWHCLTAISKvPSIRE-VILVGYYDEYVFRDFIRDSA-HDfpqLRIQYLREYQALGTAG 109
                      79******888*********************.************889999.55555555555555555554.3456789************** PP

                      HHHHTHHHHTTSSE..EEEEETTEEEESTTHHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEEC.TTSBEEEEECS-SSHSHCSEECCSEEE CS
  NTP_transferase  89 AvalaaelledeksdelvlvLggDhlikdayeeavkkaiekaakgtvtfgivpveeateyGviead.eegrverfvEKPkeakaselassGiYv 181
                       ++ +++ + + k ++ ++vL++D+ ++  + e++k + ek+a+ +++   v +++at++G+i  d +++rv + vEKP+    s+l++ G+Y+
       KKY20905.1 110 GLYHFRDAILKGK-PDSFFVLNADVCCSFPLGEMLKLFHEKDAEAIILGTRVSNDAATNFGCIVSDgHTKRVLHYVEKPESHI-SNLINCGVYL 201
                      *************.69***************************99*********************7777***********99.********** PP

                      EETTHHHHHHH CS
  NTP_transferase 182 fnsevllflak 192
                      f ++ +   ++
       KKY20905.1 202 FATDCIFPSIR 212
                      **998766655 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.2e-10   6.4e-07       2      35 ..     316     349 ..     315     350 .. 0.95
   2 ?    2.7   0.0     0.039   1.2e+02       7      35 ..     356     383 ..     351     384 .. 0.74
   3 !    4.9   2.2    0.0077        23       4      34 ..     397     427 ..     396     429 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2.2e-10
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 ++I+  ++++p a++g+nV IG++v++gag++i+
  KKY20905.1 316 VFIHPTAQVHPTAKLGPNVSIGPRVVVGAGARIK 349
                 89*****************************996 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.039
                 TEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   7 nvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 +++I + a ++  + IG  +++ga++++ 
  KKY20905.1 356 DAQIKHDACVMYSI-IGWQSRVGAWARVE 383
                 55666666666666.*********99986 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0077
                 EETTEEE-TTEEEETTEEE-TTEEEETTEEE CS
     Hexapep   4 IGsnvlIgpfaviggnVkIGdnvkIgagvvi 34 
                 I ++v++ + +++g ++ +Gd v++ ++v +
  KKY20905.1 397 IKNGVKVKSITILGRDCGVGDEVRVQNCVCL 427
                 889999999****************999976 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.5e-11   4.6e-08       1     117 [.      20     152 ..      20     227 .. 0.76

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.5e-11
                   EEEEEES..S-TTTT.....TTHHHHCCCCCCHHHHHHHHHCTT..-CEEEEECSHC.........HHHHHHTTCTS-EEE-TTSS-SHHHHHHHHH CS
  NTP_transf_3   1 aviLAGG..rSsRmg.....gdKallplggkpllervldalraag.vdevvvvggde.........evlaalarlgvrvvededpgkgplaslaaal 80 
                   aviL GG  r++R+      ++K+l +++g p+++++l a+++++ ++ev++vg ++         + ++++++l+++++++  +  g++++l++  
    KKY20905.1  20 AVILVGGpsRGTRFRplsldTPKPLFDVAGHPIIWHCLTAISKVPsIREVILVGYYDeyvfrdfirDSAHDFPQLRIQYLREY-QALGTAGGLYHFR 115
                   79*****77778996443325***********************549*******99756666666656668899999999995.689********** PP

                   HHH...SSSCEEEEETT-TT--HHHHHHHHHCHHHHTSS CS
  NTP_transf_3  81 raaa..dadavlvlacDmPlltpelverllaaaaasgad 117
                   +a+   + d ++vl +D+ +  +  + ++l+ +++++a+
    KKY20905.1 116 DAILkgKPDSFFVLNADVCC--SFPLGEMLKLFHEKDAE 152
                   **443599*********966..33355555555544444 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0013       3.8      44     117 ..     118     187 ..     111     198 .. 0.77
   2 ?    6.1   0.0    0.0015       4.6     271     319 ..     343     391 ..     291     435 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0013
  Fucokinase  44 fpkrmkpGvlvtssDvlllf...dseeisfdka.gvtalavpstldigtnHGVfvlddqsseeeeleirsvkkflhKp 117
                 ++k+++ +++v+++Dv   f   +  ++  +k+ ++++l ++ + d +tn G +v+d++         ++v +++ Kp
  KKY20905.1 118 ILKGKPDSFFVLNADVCCSFplgEMLKLFHEKDaEAIILGTRVSNDAATNFGCIVSDGH--------TKRVLHYVEKP 187
                 34577999*********98888755444444445***********************99........45555555555 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0015
  Fucokinase 271 kesavvinSvlessvsvgegsviehsslkgnvsigsnsivsglelesse 319
                  ++a + +S++ ++++++ ++ +++s ++ + ++g++  v g     ++
  KKY20905.1 343 GAGARIKESIVLEDAQIKHDACVMYSIIGWQSRVGAWARVEGTPTPVHS 391
                 5678899999999999999999999999999999999988887655443 PP

>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     3e-05     0.089      10      55 ..      29      77 ..      20      90 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3e-05
                SSCT...T-SSS-GGGSEETTEEHHHHHHHHHHCTTTEEEEEEEE-GGG CS
        IspD 10 sGkR...mkaglpKqflelkgqtllehtvdallaskavdkivvvvsedd 55
                +G+R   +  ++pK +++++g++++ h ++a+ + +++ ++++v   d+
  KKY20905.1 29 RGTRfrpLSLDTPKPLFDVAGHPIIWHCLTAISKVPSIREVILVGYYDE 77
                566522346799*******************************987776 PP

>> DUF2968  Protein of unknown function (DUF2968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   8.3e-05      0.25      64      95 ..     272     306 ..     263     310 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.3e-05
     DUF2968  64 qqkelWrviktq.dearAeaiY..adfarqtaela 95 
                 + k++Wr ikt+ ++  A+a+Y  ++f++q++el+
  KKY20905.1 272 ETKDFWRQIKTAgSAVPANALYlqKAFQSQSEELS 306
                 689*******9836679***996667******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3209.40
//
Query:       KKY20906.1  [L=821]
Description: putative dynamin family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-22   78.6   0.0    2.2e-21   76.6   0.0    2.0  1  Dynamin_N  Dynamin family
    2.8e-19   69.4   0.0    3.4e-13   49.5   0.0    2.3  2  Dynamin_M  Dynamin central region
    3.5e-08   33.5   0.0    8.2e-08   32.3   0.0    1.6  1  GED        Dynamin GTPase effector domain
    0.00012   22.2   0.0    0.00094   19.3   0.0    2.3  1  MMR_HSR1   50S ribosome-binding GTPase
     0.0092   16.4   0.1       0.12   12.8   0.0    2.4  2  AAA_16     AAA ATPase domain
  ------ inclusion threshold ------
      0.073   13.1   0.2       0.25   11.4   0.2    1.9  1  GerPC      Spore germination protein GerPC
      0.078   12.9   0.7       0.22   11.5   0.3    2.0  2  LcrG       LcrG protein
       0.08   13.5   0.3        0.3   11.6   0.3    2.0  1  DUF1843    Domain of unknown function (DUF1843)
      0.094   12.5   0.0       0.21   11.4   0.0    1.5  1  AAA_29     P-loop containing region of AAA domain
       0.13   12.1   0.0       0.25   11.1   0.0    1.6  1  AAA_21     AAA domain, putative AbiEii toxin, Type IV TA syst
       0.17   12.1   0.0       0.42   10.8   0.0    1.7  1  Roc        Ras of Complex, Roc, domain of DAPkinase


Domain annotation for each model (and alignments):
>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.0   1.4e-24   2.2e-21       1     167 [.      37     266 ..      37     267 .. 0.71

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 1.4e-24
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEE....................................................CCT---C CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelql....................................................geeeeas 47 
                 ++v+G+qS GKSS+++a+ g    pr+++ +Tr+p+e+ +                                                    +      
  KKY20906.1  37 VCVIGDQSVGKSSLIEAISGIS-VPRSAGCCTRCPIEINMsntttmkpnpttgkrwhcniylmrkfyydgsakhkasknrpfgpwmpqkeveE------ 128
                 78********************.7****************66666666666666666666665555555554444444444444433222220...... PP

                 CS...SSEEEET-EB--CHHHHHHHHHHHHHHHTSSSS--SS..................................................-EEEEEE CS
   Dynamin_N  48 eravkeelkekekkledfsevreeieketekiagankgiskk..................................................villkil 96 
                                                                                                             vi l i+
  KKY20906.1 129 -----------------------------------------LpfastgshrelreliskaqlailnptedprmykavtavhtqnlqvkfspnVIRLDIF 186
                 .........................................022222222222222333333344444555555566666666667777777******* PP

                 ETTS-SEEEEE---B-SSSGTTS.........HHHHHHH.STTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N  97 sllvkgltlvDlPGldsvnkrdq.........elvkeyi.kkadiilavtsanhdlsnsealflarevdpkgkrtivvltk 167
                 s  v +l+l+DlPG++sv+++++         elvk yi  ka+i l+ +++n+d  ns+a +l   +  +  rt++vltk
  KKY20906.1 187 SDEVGDLSLFDLPGVISVPENEEerylvglveELVKFYIkSKASINLLALPMNNDPVNSKAANLIVRYG-DRARTMGVLTK 266
                 *********************999***************99****************999999887664.45789999998 PP

>> Dynamin_M  Dynamin central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   2.1e-16   3.4e-13       2     133 ..     280     408 ..     279     458 .. 0.81
   2 !   17.6   0.1   1.1e-06    0.0018     169     275 ..     510     620 ..     499     629 .. 0.86

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 2.1e-16
   Dynamin_M   2 vdilenkvipLklGYvgVvnRsqkdInkkksieealkkEkaFFeshpay.rkl.adka..GtpyLakkLnqiLvehIrkslPelkkkineklqklekel 96 
                 +dile++++p  +GY++V n    +I      e+a+ +E++FF + p+  + l + ++  Gt +La +L+++L + Ir+ lP ++ +i ++++++   l
  KKY20906.1 280 LDILEGRKFPFGHGYFVVCNIADVEI----GHEAARMEERDFFFQGPWNsSPLvEMRCrfGTDNLAAQLQHLLENEIRRNLPVIRGRIGNRVSEIGYHL 374
                 69******************966666....789***********9999864444554444*************************************** PP

   Dynamin_M  97 eelgeskpsdeektklllqlitkfkedfkklieGese 133
                 e+l ++ p++ +++ +++q +++fk+ +++l  G+s+
  KKY20906.1 375 EKLPKK-PDT-KAMVIVTQNLSDFKHGLSDLF-GTSQ 408
                 ****95.444.9*************9999988.3333 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.1e-06
   Dynamin_M 169 eeirtairnsrGrelplfvpekaFealvkkqikkleepalkcv....elVyeelekivek.lek..elkrFpnLreeikevvedllreqeeptkemien 260
                 ++ir +  +   +++p++ +++a +++ ++ ++ +e+p   +v    +lV+++++++++   ++  +     n+ +++  +++ +l++ +++  e + +
  KKY20906.1 510 DDIRSITMDLYASNIPNLANPQAIDVMNQQSVQHWERPLNILVseteKLVRDAVIQLAQAtFDPnrQ---ETNIYKNVAGRINVFLESVMKTQIERLAE 605
                 68899999999999************************9999999999************5555431...46899999999999999999999999999 PP

   Dynamin_M 261 liemelayintnhpd 275
                 ++++el+  +t++  
  KKY20906.1 606 MLNIELQSPYTSDRV 620
                 999****99999976 PP

>> GED  Dynamin GTPase effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0     5e-11   8.2e-08       9      91 ..     680     767 ..     675     768 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 5e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCCCCHHHCCTTSGGG.....HHHHT---SCHCCCCHHHHHHHHHHHHHCCCCCH CS
         GED   9 irslvksYfnivrktiadqiPkaimhllvneakeslqkellakLykked.....ldeLLkEdeeiaekRkelkkrlealkkAreilse 91 
                 +   v  Y++i++ + ad++ ++ +  l  +++++l   l +    + d     +++LL+E++e+++ R+el+  +++l+kA+++++ 
  KKY20906.1 680 MIAIVRGYYSIAHSRFADTVCQTTQAILFAKCRDELYGDLESFFCLRTDegeafCEQLLAEHPEVTRARQELEAEIKRLRKAEDEIER 767
                 5567999*****************************999877654444445799******************************9975 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   5.7e-07   0.00094       2      72 ..      37     222 ..      36     266 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 5.7e-07
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE..................................................... CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke..................................................... 47 
                 v+++G   vGKS+Li a++g  +   +   +Tr ++e++++                                                          
  KKY20906.1  37 VCVIGDQSVGKSSLIEAISGI-SVPRSAGCCTRCPIEINMSNT--Ttmkpnpttgkrwhcniylmrkfyydgsakhkasknrpfgpwmpqkeveelpfa 132
                 89*****************93.223344455666666666511..122334455555666677777788888888888999999999999999999999 PP

                 ............................................................EEEEECGGCSS..HHHHHH...HHHHHHHH CS
    MMR_HSR1  48 ............................................................ielvDtpGlie..gaseek...glgkafla 72 
                                                                             + l D+pG+i+  +++ee+   gl +++ +
  KKY20906.1 133 stgshrelreliskaqlailnptedprmykavtavhtqnlqvkfspnvirldifsdevgdLSLFDLPGVISvpENEEERylvGLVEELVK 222
                 999999999999999999999999999999999999999999999999999999999999999999998753323333334555555444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   7.2e-05      0.12      20      63 ..      30      69 ..      19      82 .. 0.75
   2 ?    0.3   0.0      0.48   7.9e+02      72     116 ..     724     766 ..     675     791 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.2e-05
      AAA_16 20 rsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63
                ++++ ++v ++G++ vGKssl++++      +     +g c+++
  KKY20906.1 30 AAPELPSVCVIGDQSVGKSSLIEAISGISVPR----SAGCCTRC 69
                455569*****************999766666....66777666 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.48
      AAA_16  72 laqalareellrqlldeaesaeleawrekleealaavpelagaea 116
                  +++ + e +++qll+e    e+ ++r++le++++  ++++++++
  KKY20906.1 724 CLRTDEGEAFCEQLLAE--HPEVTRARQELEAEIKRLRKAEDEIE 766
                 45555677888888888..45588888888888885555555544 PP

>> GerPC  Spore germination protein GerPC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00015      0.25      44     115 ..     547     616 ..     536     623 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
       GerPC  44 TLNiGlnPsdlgksiedfaveqaktvapeneaeselfqeiqeeveayLeeeapelleelekqyeveldeeyr 115
                  LNi ++   ++k + d+ ++ a+   + n++e+++++++  +++ +Le+ +++++e+l + ++ el++ y+
  KKY20906.1 547 PLNILVSE--TEKLVRDAVIQLAQATFDPNRQETNIYKNVAGRINVFLESVMKTQIERLAEMLNIELQSPYT 616
                 56665543..44589999998777766679999999*******************************99886 PP

>> LcrG  LcrG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.8   7.8e+03       4      21 ..     139     156 ..     137     164 .. 0.76
   2 ?   11.5   0.3   0.00013      0.22       4      70 ..     694     762 ..     691     768 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.8
        LcrG   4 efaktlkaaelairdsde 21 
                 e+++ + +a lai +  e
  KKY20906.1 139 ELRELISKAQLAILNPTE 156
                 678889999999988766 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00013
        LcrG   4 efaktlkaaelairdsdeRakllqelleglGlapeageklfggleae..lvkaaeqeLleevkRrRsrq 70 
                  fa t+ +   ai  +  R +l+ +l   + l ++ ge + ++l ae  +v  a qeL +e+kR+R+  
  KKY20906.1 694 RFADTVCQTTQAILFAKCRDELYGDLESFFCLRTDEGEAFCEQLLAEhpEVTRARQELEAEIKRLRKAE 762
                 68899999999******************************999888889****************875 PP

>> DUF1843  Domain of unknown function (DUF1843)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   0.00019       0.3      27      50 ..     735     758 ..     731     760 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00019
     DUF1843  27 eqqLaeygdiasaleqLkaEIAKl 50 
                 eq Lae+++++ a ++L+aEI +l
  KKY20906.1 735 EQLLAEHPEVTRARQELEAEIKRL 758
                 89*******************997 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00013      0.21      25      50 ..      37      62 ..      26      64 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
      AAA_29 25 tlltGpsGsGKSTllDAiqalLvpak 50
                + ++G++ +GKS+l+ Ai+ + vp++
  KKY20906.1 37 VCVIGDQSVGKSSLIEAISGISVPRS 62
                6799**************99988875 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00015      0.25       3      23 ..      38      58 ..      36     189 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00015
      AAA_21  3 vliGpNgsGKSnLLdaldlla 23
                ++iG+ ++GKS+L++a+++++
  KKY20906.1 38 CVIGDQSVGKSSLIEAISGIS 58
                79***************9984 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00026      0.42       2      20 ..      37      55 ..      36      92 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00026
                EEEESSTTSSHHHHHHCHC CS
         Roc  2 vvlvGdsgvGKtsllkrfv 20
                v+++Gd++vGK+sl++ + 
  KKY20906.1 37 VCVIGDQSVGKSSLIEAIS 55
                799************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (821 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       851  (0.047465); expected 358.6 (0.02)
Passed bias filter:                      689  (0.0384294); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.54
# Mc/sec: 4594.42
//
Query:       KKY20907.1  [L=647]
Description: hypothetical protein UCRPC4_g03983 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-21   74.8   0.2    1.6e-20   73.0   0.2    2.1  1  Clr5             Clr5 domain
  ------ inclusion threshold ------
       0.13   11.2   0.3       0.28   10.1   0.2    1.5  2  Transketolase_N  Transketolase, thiamine diphosphate binding 
        5.4    7.1   7.4         96    3.0   0.0    2.5  2  PRIMA1           Proline-rich membrane anchor 1


Domain annotation for each model (and alignments):
>> Clr5  Clr5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.2   2.8e-24   1.6e-20       2      53 ..       2      53 ..       1      54 [. 0.97

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 2.8e-24
        Clr5  2 eedWeahkatIrrLYleenrsLkdvmeiMeeehgFkatkrqyktrfkkWgfr 53
                 +dW  +++++ ++Y++e+++L+++m++M+++h F ++kr+++t+fk+Wgf+
  KKY20907.1  2 VYDWGGYRDICFQMYITEKKPLEEIMDYMKTVHAFAPSKRAFQTQFKRWGFP 53
                59*************************************************8 PP

>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.62   3.7e+03      50      70 ..     255     276 ..     249     278 .. 0.77
   2 ?   10.1   0.2   4.6e-05      0.28     267     324 ..     308     367 ..     303     376 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.62
                      TT-T.TS-EEEESSGGGHHHHH CS
  Transketolase_N  50 pkwi.dRDRfvLsnGhaslllY 70 
                      ++w   +DR + sn h + + Y
       KKY20907.1 255 DQWRqAKDRLIQSNPHLTEVFY 276
                      5664158*********988877 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 4.6e-05
                      HHHHHHHHTTS-TT-TS---HHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHSHHHHHH CS
  Transketolase_N 267 evaalkkklGfdpeksfevpeevydaykekvae..gakaeeeWeekfaaykkkapeeaae 324
                       +a++k++lG++pe+  ++++  y++ k+       ++ ee+W+++ +++ ++ p ++  
       KKY20907.1 308 TIAEAKNALGINPEQARQIRNAFYNTLKSDHFTskLEAGEEHWKALKQQWIQRNPILQLI 367
                      5899*********************99987654225677899***********9987655 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.016        96      21      48 ..     190     217 ..     172     243 .. 0.69
   2 ?    2.9   5.6     0.017     1e+02      28      52 ..     537     561 ..     526     577 .. 0.60

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.016
      PRIMA1  21 cqcrrypplpppppppppprllsltaae 48 
                  + r++     p++pp ppr+ s t+ +
  KKY20907.1 190 RRRRTRGWAGLPADPPAPPRFPSETTID 217
                 4445556666789999999987766544 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.017
      PRIMA1  28 plpppppppppprllsltaaestvs 52 
                 p  ppp+pppp  + +   ++s+++
  KKY20907.1 537 PHSPPPQPPPPTTIPVYIRPHSSST 561
                 5666777777766644444444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1058  (0.0590105); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 4241.30
//
Query:       KKY20908.1  [L=564]
Description: putative bzip family transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 3664.51
//
Query:       KKY20909.1  [L=315]
Description: hypothetical protein UCRPC4_g03985 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.51
# Mc/sec: 1840.39
//
Query:       KKY20910.1  [L=370]
Description: putative acylthioesterase ii [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-64  217.1   0.2    5.8e-64  216.7   0.2    1.2  1  4HBT_3         Thioesterase-like superfamily
    2.7e-23   82.2   0.1    1.4e-10   41.1   0.0    4.1  3  Acyl_CoA_thio  Acyl-CoA thioesterase


Domain annotation for each model (and alignments):
>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.7   0.2   6.5e-68   5.8e-64       1     247 [.      21     359 ..      21     360 .. 0.78

  Alignments for each domain:
  == domain 1  score: 216.7 bits;  conditional E-value: 6.5e-68
                 E-GGGECTTC...-HHHHHHHHHHHHHHT.-S.SS..EEEEEEE-S---SE.EEEEEEEEEE--SS-EEEEEEEEETTEEEEEEEEEEE---T...... CS
      4HBT_3   1 trppwtpgga.g.yGGyvlAlalraaqrtvpdprl..hslhvyFlrpgdag.pviyhvervrdGrsfstrtvelsqggrpiftatasfgraestgwe.. 92 
                 tr++w+p ga g yGG ++A+ l aa++t+p++++  hs+h+yF+++gd + pv+y vervrdG+ f trtv+++q gr+ift+t+sf+r+++ g+e  
  KKY20910.1  21 TRSLWHPAGArGiYGGGAIAQSLLAAYKTLPSTDYiiHSMHCYFVLAGDGEnPVVYYVERVRDGKGFVTRTVQARQFGRVIFTTTMSFMRRGA-GGEkq 118
                 799********88****************97775558*******************************************************8.55533 PP

                 ---EE-------...GGGE-.--......--SSGGGS.GG....TEEEE-HHT-.--S..........S-EEEEEEEET.................... CS
      4HBT_3  93 lepaaapppvpp.p.deaal.aad.....eaplplfr.rvpg..flepfeprpa.eggkpd...spagpkrvrqWvrlr.................... 156
                  ++   +  +p+ +  ++++   +     +++ +l    vp+  +  + ++r+    ++pd    ++++k++r W+r+r                    
  KKY20910.1 119 IRH---AVGLPEgVaGTCPQgIFEhimteDEKRELEGsGVPTgdKSPFHSWRFPvLTKSPDgkpLNHSDKKTRNWMRVRgrisdnsssstsssspdtae 214
                 333...3333332224443323335555533333333344332255578888663444332201344599********999************999998 PP

                 ....TTS-SSHHHHHHHHTT-....-GGGGTSS-....................................................SB--EEEEEEEE- CS
      4HBT_3 157 ....eggepahlaaLaylsDs.f..pvprvhglrld.....................................aea.........sgwmpsldltiyfh 202
                      +++  h++aLay+sDs f  +vprvh+  ++                                     a +         +g+m+sld+ti fh
  KKY20910.1 215 hgepLDRHVPHVCALAYMSDSyFmaTVPRVHNAVRPfgpeslelaiqnipegpektartrifqnylaeiaeaeA-DheqkkhdseIGMMVSLDHTIFFH 312
                 66532234667**********99**********97788889999999999988888887777777777666550.05566677889************* PP

                 S--S-......EEEEEE-SEEETTEEEEEEEEE-TTS-EEEEEEEEEE CS
      4HBT_3 203 repae...deWllleaetpwagdgrglvearlwdedGrlvAtstQegl 247
                 + p+    deW++ e+ tpwagdgrglv +++w++dG l+At++Qeg+
  KKY20910.1 313 N-PEHfraDEWMFGEIVTPWAGDGRGLVMQHIWSKDGILIATCVQEGV 359
                 9.7224569*************************************98 PP

>> Acyl_CoA_thio  Acyl-CoA thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   3.6e-05      0.33      46     127 ..      56     104 ..      15     113 .. 0.73
   2 !   23.3   0.0     5e-09   4.5e-05      37      72 ..     213     249 ..     183     262 .. 0.80
   3 !   41.1   0.0   1.6e-14   1.4e-10      67     132 .]     289     359 ..     267     359 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.6e-05
                    CCCCCHHHHHTTSSSGGGGGGGGTTTSTTEEEEEEEEEEE-S--BTTS-EEEEEEEEEEETTEEEEEECCEEECTTEEEEEE CS
  Acyl_CoA_thio  46 llhsvllaYlSDltllltalttHelledslqvsldHsvyFlrpgdlnewilydvespsasggrgLrqGriFstqdgkliasv 127
                    ++hs+                              H  yF+  gd +++++y ve+    +g+g++   + + q g++i+++
     KKY20910.1  56 IIHSM------------------------------HC-YFVLAGDGENPVVYYVER--VRDGKGFVTRTVQARQFGRVIFTT 104
                    44444..............................66.999999999999999999..666677766666668999999985 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 5e-09
                    CCCTS-.TTHCCCCCHHHHHTTSSSGGGGGGGGTTTS CS
  Acyl_CoA_thio  37 akktvP.ddallhsvllaYlSDltllltalttHelle 72 
                    a++  P d +++h ++laY+SD++++ t++  H+ ++
     KKY20910.1 213 AEHGEPlDRHVPHVCALAYMSDSYFMATVPRVHNAVR 249
                    555557466899*********************9443 PP

  == domain 3  score: 41.1 bits;  conditional E-value: 1.6e-14
                    GGT....TTSTTEEEEEEEEEEE-S-..-BTTS-EEEEEEEEEEETTEEEEEECCEEECTTEEEEEEEEEEE CS
  Acyl_CoA_thio  67 tHe....lledslqvsldHsvyFlrp..gdlnewilydvespsasggrgLrqGriFstqdgkliasvqqeGl 132
                     He    + e ++ vsldH+++F++p  ++++ew+  ++ +p a +grgL+  +i+ ++dg lia+ +qeG+
     KKY20910.1 289 DHEqkkhDSEIGMMVSLDHTIFFHNPehFRADEWMFGEIVTPWAGDGRGLVMQHIW-SKDGILIATCVQEGV 359
                    55554456677899***********94456789***********************.*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 2290.02
//
Query:       KKY20911.1  [L=1580]
Description: putative hsp70 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-76  254.9   0.0    1.5e-75  253.9   0.0    1.3  1  N2227          N2227-like protein
    1.2e-24   87.6   0.3    2.6e-23   83.1   0.3    2.3  1  Alpha-amylase  Alpha amylase, catalytic domain
    1.6e-10   39.8   0.5    2.5e-09   35.9   0.2    2.1  2  HSP70          Hsp70 protein
  ------ inclusion threshold ------
        0.1   11.4   0.1       0.34    9.7   0.0    1.7  2  MreB_Mbl       MreB/Mbl protein


Domain annotation for each model (and alignments):
>> N2227  N2227-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.9   0.0   3.3e-79   1.5e-75      22     269 ..      34     305 ..      30     307 .. 0.93

  Alignments for each domain:
  == domain 1  score: 253.9 bits;  conditional E-value: 3.3e-79
                 HHHHH-STTHHHHHHHHHHHHHHHHHHS-T......T-EEEEET-TT-HHHHHHHHTT-EEEEEE--HHHHHHHHHHHHS---TT-EEE-TTTT--SS- CS
       N2227  22 ivRdwsaegkeERealykpiieelkelvpseskerekvkilvPGaGlGrlavelatkgyqvegnEfsyfmllasefiLnavkeenqitiypfvhsfsnq 120
                 ++Rdw +egk ER+++y pi++ l+e + +  ++++ +++lvPGaGlGrl+++l+ +g+++egnE+sy++ll s+++Ln +     + +ypf+++f+n+
  KKY20911.1  34 FYRDWTKEGKGERDVVYGPILDDLEEIFGN--QDKSTIRVLVPGAGLGRLVFDLCLNGFSAEGNEISYHQLLGSSWVLNSTAPDVTYDLYPFATQFTNN 130
                 89*************************995..9999*************************************************************** PP

                 SSGGGGG--EEE-SS------TT.......S--EEEEES-HHHHH--SSHTT-EEEEEEES-TTSSS-HHHHHHHHHHHEEEEEEEEEEE----TTT.. CS
       N2227 121 lsrddqlrkvkipDveplselkr.......kknlsmaagdflevykeeeaaesydvvvtcfFiDtaeNvleYletiekvlkpgglwiNlGPLlYhfe.. 210
                  +r+ q r  k+pD++p + l++        ++++m+a+dfl  y++ +++ s+++v+t+fFiDta N ++Y+e+++++l  gg+w N+GPLl+hf+  
  KKY20911.1 131 INRSFQFRCCKVPDIHPGKTLNEamqngqnVGSMNMSAADFLVQYNSPSQRGSFHAVATAFFIDTAPNFIRYIEAVHNCLVTGGIWTNVGPLLWHFDdr 229
                 ****************98887777777777899****************************************************************77 PP

                 ...............TTT.SEEEEE----HHHHHHHHHHS-EEEEEEEEEE..EE-SS-STT--S---EEEEEEEEE CS
       N2227 211 ...............dlt.vadevsielsleeilalakkvgfkvlkeekei..esgYltnkesmlqlkYklvffvlr 269
                                dl  +a+  s+el+ +e+l +++k+gf+++k+e       gY++++esmlq+ Y+ + +v+ 
  KKY20911.1 230 apheeseshgtstpkDLDgIAEPGSFELTNDEVLLVVEKFGFRIVKQEL-LdkPVGYIQDPESMLQNLYRIAHWVAI 305
                 7777777777777776656777777*********************998.524679******************986 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.3   5.7e-27   2.6e-23      10     334 ..    1075    1451 ..    1068    1455 .. 0.81

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 5.7e-27
                     CCCCCCCT-SCEEE-B-CE..-S-TTTTSS-SCEC.........CE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCC......... CS
  Alpha-amylase   10 LdYlkeLGvtaiwlsPifk..spqadhgYdiadyt.........kidpefGtnedlkeLiskahekgikvilDlVvNHtsdehew......... 83  
                     L+ lk  G++ +w+ P  k  sp + +gYdi d +         ++ +++Gt+++l++L++ka e g+ + +D+V NH + + +          
     KKY20911.1 1075 LPGLKATGIDNLWIPPACKasSP-SGNGYDIYDLYdlgefdakgSVGTKWGTKQELDALVDKAEEVGVGLYFDAVLNHKAAADHVekcqakevd 1167
                     5669999***********98555.99*******984444444444788******************************998877778******* PP

                     .................................................CHCCHHSTTSGGGCCC-E..........ESS-STTC-....TTTT CS
  Alpha-amylase   84 .................................................fkeslkkkgepkrdyyiwkegk....eekeppnnwks....lfdg 120 
                                                                      f+   +  ++ +++ y+w++ +          +++ s    l ++
     KKY20911.1 1168 sngafsrlnepddsnlllnefqwdfankdvpadrtreisdvveiegwlgFDFPAR-GDKYSSQKYHWHHFTgtdyD---NATKKTSiykiLGEN 1257
                     ***********************************************98443333.46678899999988753332...333333355567888 PP

                     CSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCCCCCCCCTTT..-SEEEETTCCCTTTCCCCHCCHCCHHHHHHHHHHHTCCGTT-EEEE CS
  Alpha-amylase  121 saweydekaqeyylhlflkklpdLnteneevrkelkdvvkfwlekg..idGfRlDvvkhvskvealesngeflheftqalnetvasrkevmtvg 212 
                     +aw+++  +++    ++ +++   ++ ++ev++++k+   +w  k+    GfRlD++kh+s+         fl +f + l+et    +  + vg
     KKY20911.1 1258 KAWSTSVDKEKGNYDVDDSQQGFRDYSHPEVQEDVKNW-GVWAAKNlkLKGFRLDAIKHYSE--------TFLVSFVKHLDETL--GEGWFFVG 1340
                     99998555544445566677777789**********93.456666556**************........***********998..899999** PP

                     E-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS-HHHHHHHHHHHHHHS-CCCTTCEEES--TTS--HHHHTTSSTTTTHHH CS
  Alpha-amylase  213 EvssdasedlrvyttearlelemvldfphldvaqkakikeqlksisakklkellkkwlkaleeaaeeavtflgnHDqeRilsrlgddsaeaekk 306 
                     E+++++ edl +y +  ++e +    f  +d+   +k ++ +++ + ++l ++++  l + e   ++avt++ nHD++ +   ++  s   +  
     KKY20911.1 1341 EFWKSNLEDLTAYLS--KMEHR----FCLFDAPLVYK-FSSISQGDKADLRSVFDGTLVQAEP--YNAVTLVMNHDTQPSQALAAPISD--WFI 1423
                     ****99997777765..55555....44555555555.4467777889********9999995..****************99999994..666 PP

                     HHHHHHCCCTSSSEEEEETTCCCT---- CS
  Alpha-amylase  307 lklaaillltlrGvpviYyGeEigmtgg 334 
                      +++a +ll   G p+ +yG+  g++gg
     KKY20911.1 1424 PHAYAFILLRNAGYPCLFYGDVYGLKGG 1451
                     6788888999***********9999886 PP

>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.012        52       1      47 [.     479     534 ..     479     537 .. 0.64
   2 !   35.9   0.2   5.5e-13   2.5e-09     112     348 ..     587     850 ..     582     887 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.012
                 EEEEEEXSSEEEEEEE....ETTEEEEEXX.....TTSXSSEESEEEEXTTSEEET CS
       HSP70   1 viGiDLGttnsvvavm....eggkievian.....eegnrttPsvvaFtkkerlvG 47 
                 ++GiD Gtt s va +     + k ++i++     ++ ++  P v+ +++ +++vG
  KKY20911.1 479 IVGIDFGTTFSGVAFAfatnTEAKEDIITEwpgagTQTKQKIPTVLYYDQYQKVVG 534
                 69*********998762211334456887622222444566777777777777777 PP

  == domain 2  score: 35.9 bits;  conditional E-value: 5.5e-13
                 HHHHHHHHHHHHHHHHHHTSBEEEE..........EEEEXTTXXHHHHHHHHHHHHHTTX......EEEEEEEHHHHHHH...HHHTCCSSSCEEEEEE CS
       HSP70 112 qisamvLkklketaeaylgkkvtda..........vitvPaYfndaqRqatkdAgkiAGL......nvlRivNepTAaal...aYGldkkdkernvlvy 191
                 +++a  L kl++t  ayl+k++ ++           +tvPa +nda + at+ A+  AG       n l ++ ep Aaa+     Gl + + +  vl++
  KKY20911.1 587 DVAADYLFKLRQTLRAYLQKTLGEVynreerniryFLTVPAIWNDAAKAATRAAAIQAGYirddndNRLTLITEPEAAAMfcsKTGLLNLKIHDAVLIV 685
                 5788888899999888888885544222233323369**********************877776678889********9443469999999******* PP

                 EEXSSXEEEEEEEEETT.EEEEE.EEEEET.TXSHHHHHHHHHHHHHHHHHHHHSXXGGGSH.HHHHH.HHHHHHHHHHHTTTSSCS.EEEEEEEE.EE CS
       HSP70 192 DlGggtfdvSilelekG.vfevk.aTagDt.hlGGedfDealvehlveefkkkegidlskdk.kalqr.lkeaaekaKkeLSsskqt.einleiet.vd 283
                 D Gggt d    e+e+   f v   Tag     G     ++  + l+++++k +  d sk   k++ + + +  +++K ++ ++ q+  +++ ie+ + 
  KKY20911.1 686 DCGGGTVDLIAYEVEEEtPFTVAeCTAGSGdSCGSTALNRNFSNILRAKIRKMKLPDGSKTAgKVYAKcIMDFENRIKADFRNNGQKwAVDVGIEAeFP 784
                 **************965356664235554304688899**************999998876425555527777789****9987543266777776244 PP

                 TTT.EEEEEEEEHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHH CS
       HSP70 284 edg.kdlseklsRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvke 348
                 e+g ++  ++++ +++ +  e++++r+le v++ +   + ++  +++v++vGG      + +++k 
  KKY20911.1 785 EAGiEEGYMTFTNEEILQCFEPVVNRILELVRNQIIAIQAQNRSLQNVLVVGGFGASEYLFQQIKL 850
                 55789999*********************************************7665555555554 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   7.7e-05      0.34      78     159 ..     600     694 ..     588     700 .. 0.77
   2 ?   -1.7   0.1      0.21   9.6e+02     236     315 ..     794     874 ..     788     881 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 7.7e-05
                 HHHHHHHHHT...SS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT......-SEEEEEEHHHHHHHHTT....--TTSSS-EEEEEE-SS-EEE CS
    MreB_Mbl  78 lkyfikkvkk...kkslskprvvicvPsgiteverrAvkeaakkaG......arevllieeplaAAiGag....lpveepsgnmvvdiGggttev 159
                 l+ +++k+     ++  ++ r  ++vP   ++  + A + aa +aG       ++ +li ep aAA+ +     l+++   + ++vd+Gggt ++
  KKY20911.1 600 LRAYLQKTLGevyNREERNIRYFLTVPAIWNDAAKAATRAAAIQAGyirddnDNRLTLITEPEAAAMFCSktglLNLKIHDAVLIVDCGGGTVDL 694
                 44444444442334456778889999999999999999999999995544444789**********98754445899999************985 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.21
                 EEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGG...GSBTHHHHHHHHHSS-EEE-SSTTTHHHHHH CS
    MreB_Mbl 236 evsseevrealkepvsaiveavkevLektppeLaadivdrgivltGGga...llkgldkllseetglpvkvaedpltcvakGt 315
                 + ++ee+ ++ + +v++i+e v++ + ++ ++  +  +++ +v+ G ga   l+++++  +  +++ +v    d++ +++kG+
  KKY20911.1 794 TFTNEEILQCFEPVVNRILELVRNQIIAIQAQNRS--LQNVLVVGGFGAseyLFQQIKLHVPPQFQAKVVRPMDSVAAIVKGA 874
                 66789999999999999999999988777665333..4555555443444445677777777777777777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.52
# Mc/sec: 9131.57
//
Query:       KKY20912.1  [L=316]
Description: hypothetical protein UCRPC4_g03989 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2085.64
//
Query:       KKY20913.1  [L=393]
Description: putative thaumatin family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-66  224.1   4.8    2.2e-66  223.6   4.8    1.2  1  Thaumatin       Thaumatin family
     0.0033   16.8   0.1       0.06   12.6   0.0    2.2  2  Glyco_hydro_64  Beta-1,3-glucanase


Domain annotation for each model (and alignments):
>> Thaumatin  Thaumatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.6   4.8   2.4e-70   2.2e-66       1     214 []      44     324 ..      44     324 .. 0.90

  Alignments for each domain:
  == domain 1  score: 223.6 bits;  conditional E-value: 2.4e-70
                 E-SSS-EEEE.EETTT......EEEEE-TT-EEEEE.--.-.SEEEEEEECEEE-TTSE..........ECCS--TTBSS-SS-.--SS--EEEEEECE CS
   Thaumatin   1 Nkcsftvwpailtnagsealektgfelepgesrtls.vpakwsgriwgRtgCsfdssgs..........CatGdcggkleCkgaggappatlaeftlee 88 
                 N c++ ++p+i+t+ag+ a++++gf le+g s++ + v+a+w+griwgRt+Csf++ g+          C+tGdcgg++ C+g+g++ patlaeftle+
  KKY20913.1  44 NYCAEDIYPGIQTQAGT-APDSQGFLLEAGGSTRKQtVSADWQGRIWGRTNCSFNDDGTtpangiagkaCTTGDCGGTVVCQGTGEV-PATLAEFTLES 140
                 89*************96.66779****997665544499****************76655788999***************988666.*********98 PP

                 CCC..EEEEEEE-TT-BSS-EEEE...E-S...........................................----E..E-S-CCCC--GGGE..... CS
   Thaumatin  89 kkekkqdfYdvslvdGynlpvsit...pae...........................................ckvae..caadlnkaCpaelkv.... 135
                    ++q++Yd+slvdGyn+p+ i    + +                                           ++ a+  +  +++++Cp++l+     
  KKY20913.1 141 G--SGQTYYDISLVDGYNIPLGIIsllG-TsgnstltdippnltnpmcvgtasqlsaqgndsatefgtnstypIPLAQgiTFDEVQEWCPWPLQQdpps 236
                 6..569*****************95552.157889**************************************555443599************99*** PP

                 .................ETTEE--HHHHH--HHHH-SCGGG...G----HHHHHHHHH-TTSBSSTT-HCCC-EEE.ETT--EEEEE-- CS
   Thaumatin 136 ..........krkdsegkvvaCksaCeafnsdeyCCtgeyatpetCkpteysklfkkaCpdaysYayddasstftcskkkadytvtfcp 214
                           + + ++  + +C saC++ +++eyCCtg++++p++C+p+eys+ +kk+CpdaysYaydd++stf +  ++ +++v+fcp
  KKY20913.1 237 kpgdgvypypDDNIKRPFFDPCLSACAKWGKAEYCCTGSHDSPSKCQPSEYSTQAKKVCPDAYSYAYDDQTSTFII-PSGGGFEVVFCP 324
                 ********99556667899*********************************************************.679********8 PP

>> Glyco_hydro_64  Beta-1,3-glucanase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   6.7e-06      0.06     125     182 ..     133     192 ..     127     206 .. 0.76
   2 ?    1.6   0.1     0.015   1.4e+02     335     350 ..     292     307 ..     280     318 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.7e-06
                     EEEEEE...TTEEEEE---SSEE-S-EEE.EEEESSS...-EEEEE-S-HHHHHHHHHHHS CS
  Glyco_hydro_64 125 faEftyn..saglfaNisyVDfvslplgl.eltgasgatqtvkglkadglakvcaalkaqa 182
                     +aEft++  s + + +is VD +++plg+ +l g+sg ++t + ++++  + +c + ++q 
      KKY20913.1 133 LAEFTLEsgSGQTYYDISLVDGYNIPLGIiSLLGTSG-NSTLTDIPPNLTNPMCVGTASQL 192
                     79****755889***************9538888888.77777777777777766655554 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.015
                     TBGGG----STTTTGG CS
  Glyco_hydro_64 335 nsvdgkgYaFaYDDvn 350
                     ++v   +Y +aYDD +
      KKY20913.1 292 KKVCPDAYSYAYDDQT 307
                     4566789*******87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 2429.24
//
Query:       KKY20914.1  [L=269]
Description: putative autophagy-related protein 27 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-77  259.2   0.0    6.2e-77  259.0   0.0    1.0  1  ATG27          Autophagy-related protein 27
  ------ inclusion threshold ------
      0.018   15.2   5.1      0.086   12.9   0.2    2.2  2  Asp-B-Hydro_N  Aspartyl beta-hydroxylase N-terminal region


Domain annotation for each model (and alignments):
>> ATG27  Autophagy-related protein 27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.0   0.0   6.9e-81   6.2e-77      59     264 .]       1     265 [.       1     265 [. 0.95

  Alignments for each domain:
  == domain 1  score: 259.0 bits;  conditional E-value: 6.9e-81
       ATG27  59 iCeplkkkkdvkkedqCpkgtrvCgitrvikk.dekdeitqvipi......ggksldpkvtrlkesd.....ekeglrlelkggkygkkkqkaiieflC 145
                 +C+plk++kdv+ ed+Cpkgtr+Cgi  + ++ d+  e+ +vip+      +g++ldpk++r+k  +     e +gl++el+ggk+gk+kq a+ief+C
  KKY20914.1   1 MCAPLKENKDVPVEDTCPKGTRICGISISGNEaDKIVEVEHVIPVagtyvhDGRNLDPKIKRIKAPKesvagEGGGLEVELHGGKWGKRKQMASIEFIC 99 
                 5*************************999998555555*************************99999***9999************************ PP

       ATG27 146 d....................................................ekslkfksydeee.eeekdvlrlewktkyACekaekdkkdsskkke 191
                 d                                                    ++sl+f+sy++++ ++++dvl+l+w tk+ C ++e+d+++      
  KKY20914.1 100 DskrtgnegnekakdepegeeevagltlgkelnvrkegddketkdedddtkdeKNSLRFVSYGKSTeDDSVDVLKLQWLTKQVCLDNEDDDNK------ 192
                 99***************************************************99*********998999***************76554443...... PP

       ATG27 192 ksgwGfFtwlfiilflataaYlifgswlNynryGargwDllphgdtirdlPyllkDvvrkvlgtvqgsgsrgG 264
                 +sgwGfFtw+++i+fl+ta YlifgswlNynryGargwDllphgdtirdlPyl++++vrkv++tvqgsgsrgG
  KKY20914.1 193 RSGWGFFTWFILIAFLGTATYLIFGSWLNYNRYGARGWDLLPHGDTIRDLPYLFREWVRKVIDTVQGSGSRGG 265
                 389*********************************************************************9 PP

>> Asp-B-Hydro_N  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   1.1    0.0041        37     158     222 ..     107     171 ..      34     183 .. 0.75
   2 ?   12.9   0.2   9.6e-06     0.086       8      24 ..     194     210 ..     186     215 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0041
  Asp-B-Hydro_N 158 evEeslkveetvseeakk.dmkekaseeenekskepveeaekekaeakeveeedkeeeaeedekve 222
                    e +e++k e   +ee +   +  + +  ++ + ke++ e+  +k+e++ ++  ++ +  +ed++v+
     KKY20914.1 107 EGNEKAKDEPEGEEEVAGlTLGKELNVRKEGDDKETKDEDDDTKDEKNSLRFVSYGKS-TEDDSVD 171
                    3334444444444444430344556667777888888888888888888888888777.5666665 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 9.6e-06
  Asp-B-Hydro_N   8 sGgSFFtWfmViaLLGv 24 
                    sG  FFtWf+ ia LG 
     KKY20914.1 194 SGWGFFTWFILIAFLGT 210
                    7889************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1923.82
//
Query:       KKY20915.1  [L=568]
Description: putative nadph oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-21   75.3   0.0    9.7e-21   74.5   0.0    1.3  1  NAD_binding_6  Ferric reductase NAD binding domain
    3.7e-20   72.0   0.0    9.2e-20   70.8   0.0    1.7  1  FAD_binding_8  FAD-binding domain
    6.8e-19   68.2   9.0    6.8e-19   68.2   9.0    2.4  2  Ferric_reduct  Ferric reductase like transmembrane component
  ------ inclusion threshold ------
       0.09   13.1   0.0       0.22   11.9   0.0    1.6  1  FAD_binding_6  Oxidoreductase FAD-binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   2.2e-24   9.7e-21       5     152 ..     388     548 ..     385     552 .. 0.91

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 2.2e-24
                    xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   5 llvagGiGitpfisilkdllkksk..kealktkkikliwvvressslewfkdvLneleeekse........gnieihiYlTseyeaedasdqliss 90 
                    +l++ GiG+tp +silk+++      + + + +++++iwv++++ s+ewf+ +L++le ++ +         +++ih+YlT+  ++++  + + + 
     KKY20915.1 388 ILIGTGIGVTPWASILKNIWHMRGgpNPPQRLRRVEFIWVCKDTTSFEWFQTLLSSLEAQSASaatvaggpEFLRIHTYLTQRLDQDTTANIYLNT 483
                    69******************9988777899******************************9999999998889*************9998754444 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6  91 iegenseslkqgvdavsgtrnvkihfgRPnlkevlkdi............askhknssvgvfvCGppklvkevk 152
                               +vd +++++ ++++fgRP++k++++ +             s + ++ vgv+ CGp++ ++++k
     KKY20915.1 484 --------VGAQVDPLTELK-TRTNFGRPDFKRLFSAMrdgltdqsymsgLSGSLTTDVGVYFCGPNAAARDIK 548
                    ........44789*******.***************************9999**************99877766 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   2.1e-23   9.2e-20      15     108 ..     273     377 ..     259     378 .. 0.91

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 2.1e-23
  FAD_binding_8  15 dliklkvskpkkslkykaGqyvyinipslsklfwqsHPFtiasapeddklslvikvksgltkklakkllsssk...............kelenkka 95 
                    d ++++++kp++  kykaGq++++++ps+s  + q+HPFti+s p+d ++s+++++ +++t+ l   l   ++                 l+n+++
     KKY20915.1 273 DAMEIQFRKPSM--KYKAGQWLFLQVPSVS--SQQWHPFTITSCPFDPYISVHVRQVGDFTRALGDALGCGPSqakaydgldpmgmyeIALQNGQQ 364
                    7899*******7..****************..66********************************99877667899*********99888999** PP

  FAD_binding_8  96 klkvlidGPYGap 108
                     + + idGPYGap
     KKY20915.1 365 MPGLRIDGPYGAP 377
                    ***********98 PP

>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.4     0.056   2.5e+02      45      65 ..      17      37 ..      13      62 .. 0.60
   2 !   68.2   9.0   1.5e-22   6.8e-19      11     124 ..      66     183 ..      55     184 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.056
  Ferric_reduct 45 fllallHvilyllnflrfsal 65
                   +l+  +H++l+++ ++++ + 
     KKY20915.1 17 ILFWGVHWALFAVGWIKQADD 37
                   667778999999988876543 PP

  == domain 2  score: 68.2 bits;  conditional E-value: 1.5e-22
  Ferric_reduct  11 lalllalRn..nfle.pltglsldklllfHkwlgvlafllallHvilyllnflrfsal..deerlldsllkkpynllGvlalllliilaitSlkfi 101
                    l+ll ++Rn  + ++ ++  l+ld   +fH++++++++l++++H++ +++nf+  +     +e  ++  ++++  ++G ++ll+++++++t++  i
     KKY20915.1  66 LILLPMCRNilRYVRpKIKWLPLDESQWFHRQVAYALLLFTIIHTASHYVNFFNVERTqiRKETAVQIHYTQAGGITGHIMLLCMLLMYTTAHARI 161
                    4455558886655667889999*******************************98877777788888888888888******************** PP

  Ferric_reduct 102 rrrlsyelFyylHhllyvaylll 124
                    r + s+e+F+y+Hhl+++++l l
     KKY20915.1 162 R-QQSFETFWYTHHLFIPFMLGL 183
                    *.9999*************9875 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.9e-05      0.22      21      71 ..     277     341 ..     265     377 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.9e-05
                    ESTTTS-----TT-EEEEEECETTCCEEEEEE.BSSTTECCEEEEEEE--...............T CS
  FAD_binding_6  21 lpsekqklglpvGqhvflrlkikgeaviRsYtpissenekGelellvkvy...............p 71 
                    ++ +k ++++ +Gq++fl+++   ++ + ++t++s +  + ++ ++v+ +                
     KKY20915.1 277 IQFRKPSMKYKAGQWLFLQVPSVSSQQWHPFTITSCPF-DPYISVHVRQVgdftralgdalgcgpS 341
                    45567789*************88889******777664.568999999885555555555555550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 4240.60
//
Query:       KKY20916.1  [L=143]
Description: putative pro41 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1066.04
//
Query:       KKY20917.1  [L=539]
Description: putative glycoside hydrolase subgroup catalytic core [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3562.81
//
Query:       KKY20918.1  [L=229]
Description: putative phosphatidylserine decarboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-09   36.1   0.0    6.8e-09   35.6   0.0    1.3  1  PS_Dcarbxylase  Phosphatidylserine decarboxylase


Domain annotation for each model (and alignments):
>> PS_Dcarbxylase  Phosphatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   3.8e-13   6.8e-09       1      62 [.     160     223 ..     160     229 .] 0.87

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 3.8e-13
  PS_Dcarbxylase   1 lneffvrklkdgaRpidddpga..ivsPaDgrilqigeieegsviqvKgityslrdLlgeases 62 
                     +neff r++k  aRpi++  ++    s aD+r +++ +i+  + +++Kg  ++l+ Llg++++ 
      KKY20918.1 160 FNEFFAREIKASARPIAEPANDlvTSSVADCRPTAFPTIDLATKYWIKGFGFTLARLLGDNETL 223
                     8***************555555557789********************************9874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1685.13
//
Query:       KKY20919.1  [L=758]
Description: hypothetical protein UCRPC4_g03996 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.15   11.0   0.2       0.26   10.2   0.2    1.3  1  Chloroplast_duf  Petal formation-expressed
        8.8    6.5   8.1        3.8    7.7   4.8    2.2  2  UPF0561          Uncharacterised protein family UPF0561


Domain annotation for each model (and alignments):
>> Chloroplast_duf  Petal formation-expressed
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   2.9e-05      0.26     211     278 ..     676     741 ..     669     746 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 2.9e-05
  Chloroplast_duf 211 vnkilaiagPlltgia.avgsafvgsaengswaaivavlagalaavvntlehggqvGmvfelyRncaGf 278
                        k + i  P++ gi+ ++g   +g++++g +     v+ag +a +vn++   g  G + +l+R + Gf
       KKY20919.1 676 NYKKVVIGDPAFKGIGgNMG---TGATSSGLIVGRGNVTAGDVAKAVNAMVASGHFGWLRDLFRLVCGF 741
                      56778899999999972444...45555678888999*******************************9 PP

>> UPF0561  Uncharacterised protein family UPF0561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       1.8   1.6e+04      42      58 ..      68      84 ..      65      87 .. 0.78
   2 ?    7.7   4.8   0.00042       3.8      41      94 ..     540     593 ..     529     600 .. 0.80

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1.8
     UPF0561 42 qakekqrrrhtttprrp 58
                +a e +r   +++p rp
  KKY20919.1 68 EAEEERREELAPAPIRP 84
                57788888889999998 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00042
     UPF0561  41 kqakekqrrrhtttprrprrpdlqvylprsrdgsepgsnaeaeesnesssstea 94 
                 + a+ +q rr t++p +  +p+ q y+  s + s+ ++++    s  +ss++ +
  KKY20919.1 540 RAAQLQQDRRSTPSPVKTPNPQSQPYNRWSSNSSTLSGTSSRSSSHTASSTSTV 593
                 45778899**************************99998887777766665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 4776.23
//
Query:       KKY20920.1  [L=66]
Description: putative dna-directed rna polymerases n 8 kda subunit superfamily [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.9e-30  103.1   3.1    7.9e-30  103.0   3.1    1.0  1  RNA_pol_N       RNA polymerases N / 8 kDa subunit
  ------ inclusion threshold ------
      0.011   15.9   1.0      0.014   15.6   1.0    1.2  1  Chordopox_RPO7  Chordopoxvirus DNA-directed RNA polymerase 7 


Domain annotation for each model (and alignments):
>> RNA_pol_N  RNA polymerases N / 8 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   3.1   8.8e-34   7.9e-30       1      59 []       1      58 [.       1      58 [. 0.97

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 8.8e-34
                ----SS-TTT--B-STHHHHHHHHHHTT--HHHHHHHHT--SHHHHHHHHTB--THHHH CS
   RNA_pol_N  1 MiiPVrCFtCGkvigekweeylellekgeepkdaLdaLglkryCCrrmllthvdliekl 59
                MiiPVrCF+CGkvi+++we+y +lle+  ++++a+d+Lg+kryCCrrml+thvdliekl
  KKY20920.1  1 MIIPVRCFSCGKVIADLWEKYIQLLETH-QDGEAMDKLGCKRYCCRRMLMTHVDLIEKL 58
                9*************************99.67**************************96 PP

>> Chordopox_RPO7  Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   1.0   1.6e-06     0.014       1      49 [.       1      53 [.       1      60 [. 0.81

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.6e-06
  Chordopox_RPO7  1 mvfplvCstCGrDlse..eryrLlvkkkkLkdvlatv..krkCCrlkLstqie 49
                    m+ p+ C +CG+ +++  e+y  l++ ++  + ++++  kr CCr  L t ++
      KKY20920.1  1 MIIPVRCFSCGKVIADlwEKYIQLLETHQDGEAMDKLgcKRYCCRRMLMTHVD 53
                    8999*******988765578888888888888887654499*****9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 482.96
//
Query:       KKY20921.1  [L=919]
Description: putative wd domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-06   28.3   8.5     0.0056   17.5   0.1    5.6  5  WD40            WD domain, G-beta repeat
  ------ inclusion threshold ------
        1.6    8.8   5.1        5.4    7.1   5.1    1.8  1  Transformer     Fruit fly transformer protein
        3.1    6.5   6.7        6.5    5.4   6.7    1.4  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   9.4e-07    0.0056      10      37 ..     343     371 ..     337     372 .. 0.85
   2 ?    3.4   0.0     0.028   1.7e+02      12      27 ..     501     518 ..     489     541 .. 0.83
   3 !    6.1   0.0    0.0037        22      19      38 .]     585     604 ..     567     604 .. 0.68
   4 ?    1.4   0.2      0.12   6.9e+02      15      36 ..     646     673 ..     636     675 .. 0.73
   5 ?   -1.6   0.0         1   6.2e+03       9      23 ..     762     777 ..     757     797 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 9.4e-07
                 SSS..EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  10 Hss..vtslafspdgawlasGsdDgtvriW 37 
                 H    v+s+++s+dg++++sG++   + iW
  KKY20921.1 343 H-RevVNSVKWSRDGNYVISGGRETVLVIW 371
                 5.2448************************ PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.028
                 S..EEEEEEETTSSEEEE CS
        WD40  12 s..vtslafspdgawlas 27 
                 +  vt ++ s+dg wla+
  KKY20921.1 501 DpaVTQISISHDGLWLAT 518
                 34599***********97 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0037
                 ETTSSEEEEE.ETTSEEEEEE CS
        WD40  19 spdgawlasG.sdDgtvriWd 38 
                 +p++  +a + +dDg+v++W+
  KKY20921.1 585 NPSHLEFA-SiGDDGNVKVWS 604
                 55555555.3356*******5 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.12
                 EEEEETTSSEEEE......EETTSEEEE CS
        WD40  15 slafspdgawlas......GsdDgtvri 36 
                 sla+s dg+ la+      ++ + +v++
  KKY20921.1 646 SLAWSEDGSVLAAhlqidsSGANSSVKL 673
                 899*******986555555334777776 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 1
                 SSSSE..EEEE.EETTSS CS
        WD40   9 GHssv..tsla.fspdga 23 
                 GH  +  tsl+ f+pd++
  KKY20921.1 762 GH--IpqTSLSiFHPDQP 777
                 66..88899999999976 PP

>> Transformer  Fruit fly transformer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.1   0.00091       5.4       9     102 ..      14     103 ..      10     145 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00091
  Transformer   9 sprdsrrdsrkkekiPyfadevrerdrvrrlrkrktqstrpttshrerrtrsrsrsqsaeresrqrrrrsrsrsrrrsdsrskssssterrrrs 102
                  + rd+  ++r+  k   +a e++e d +r      t+ t  ++++ +   +s + s+s+e    +   ++ + + ++s+s++ks+   +r+r+ 
   KKY20921.1  14 QSRDAEDSTRHASKKRKLAGELKESD-IRGSE-ASTDATS-SKANGNTDIQSTTHSKSSESAGIENSPKKNAEKEKKSKSKHKSKHE-NRKRHV 103
                  5677777777777777789*****99.44322.2222222.2344555677777778888888888888888889999999999998.788874 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   6.7    0.0011       6.5     228     305 ..      34     119 ..       6     126 .. 0.52

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0011
  Pkinase_fungal 228 tka.ekfrskrkvvsssssqe.....lsskaevklkksesskkvekrsvdssv..stskrsrlenrvhrrlvispvGkpiekaesp 305
                     + + +++r ++++++++ss++      +s++++k+ +s + ++  k++ ++++  +++++s+ enr  +++v + ++++i+  ++ 
      KKY20921.1  34 ELKeSDIRGSEASTDATSSKAngntdIQSTTHSKSSESAGIENSPKKNAEKEKksKSKHKSKHENRKRHVIVATKAAVQIYSTSTS 119
                     2222344444444444444446664422222222222222222222222222223444455579****************998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (919 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1368  (0.076301); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.50
# Mc/sec: 5558.89
//
Query:       KKY20922.1  [L=115]
Description: putative vacuolar atp synthase subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-32  110.9  19.1    4.4e-32  110.7  19.1    1.0  1  V-ATPase_G     Vacuolar (H+)-ATPase G subunit
  ------ inclusion threshold ------
      0.011   16.3   4.7      0.017   15.6   4.7    1.4  1  YusW           YusW-like protein
      0.013   15.6  10.5      0.013   15.6  10.5    2.1  2  ATP-synt_B     ATP synthase B/B' CF(0)
      0.029   14.8  14.6      0.044   14.2  14.6    1.3  1  V-ATPase_G_2   Vacuolar (H+)-ATPase G subunit
      0.086   13.2  19.2       0.11   12.9  19.2    1.0  1  OmpH           Outer membrane protein (OmpH-like)
       0.28   10.2   2.4       0.32   10.0   2.4    1.0  1  HypD           Hydrogenase formation hypA family
       0.34   11.6   5.8       0.44   11.3   5.8    1.2  1  DUF2203        Uncharacterized conserved protein (DUF2203)
        0.7    9.6  12.5       0.85    9.4  12.5    1.0  1  ATP11          ATP11 protein
       0.72   10.4  15.9        0.4   11.2   5.8    2.1  2  Ribosomal_L6e  Ribosomal protein L6e
        1.1    8.7  22.0       0.11   11.9  13.5    2.0  2  DUF3552        Domain of unknown function (DUF3552)
        2.5    8.6  12.0        2.5    8.6  10.5    1.8  1  DUF16          Protein of unknown function DUF16
        3.2    6.4   9.0        3.6    6.3   9.0    1.0  1  SAPS           SIT4 phosphatase-associated protein
        4.7    7.9  11.6       0.45   11.2   3.9    2.1  2  KfrA_N         Plasmid replication region DNA-binding N-term
          7    5.9  11.1        7.9    5.7  11.1    1.1  1  DUF4407        Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> V-ATPase_G  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7  19.1   3.5e-35   4.4e-32       1     105 []       4     108 ..       4     108 .. 0.98

  Alignments for each domain:
  == domain 1  score: 110.7 bits;  conditional E-value: 3.5e-35
                 -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH CS
  V-ATPase_G   1 sqsqgIqqLLqAEkeAaeivkeArkrkakrlkqAkeeAekEieeyrakkekefkekeaeklgseeelekkieketeekikelkesvkknkeavvkellk 99 
                 ++s+gIq+LL+AEkeA++iv++Ar++++kr+k+A++eA+kEi+ey++kk++efk++eae+ ++++++e++++k++e k+ke++++ kk  ++v+++l+k
  KKY20922.1   4 QNSAGIQTLLDAEKEAQKIVQKAREYRTKRVKDARTEAQKEIDEYKQKKDEEFKKFEAEQGSGNKKAEEEANKDAEAKLKEIDQAGKKSGQKVIDDLIK 102
                 5899*********************************************************************************************** PP

                 HHTSXX CS
  V-ATPase_G 100 lvldvk 105
                 +v+dv+
  KKY20922.1 103 AVIDVQ 108
                 ***985 PP

>> YusW  YusW-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   4.7   1.3e-05     0.017      18      73 ..      47     103 ..      33     113 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.3e-05
        YusW  18 eYekekdeteakie.dgankekleGdeAleelealLseLsvdsetsedevisqvlsa 73 
                 eY+++kde+  k e ++ +++k   +eA +  ea L+e++ + ++s ++vi+ +++a
  KKY20922.1  47 EYKQKKDEEFKKFEaEQGSGNKKAEEEANKDAEAKLKEIDQAGKKSGQKVIDDLIKA 103
                 8*****99666666699************************************9986 PP

>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6  10.5   9.9e-06     0.013      57     106 ..       9      58 ..       1      65 [. 0.88
   2 ?    5.1   3.7     0.018        23      53      88 ..      68     103 ..      58     108 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.9e-06
  ATP-synt_B  57 eqqlkeAraeAaeiiknAkkeaeklkeeieaeaeaeaerlkesAaaeIeq 106
                  q l +A++eA++i+++A++ + k  +++++ea++e++  k+++ +e ++
  KKY20922.1   9 IQTLLDAEKEAQKIVQKAREYRTKRVKDARTEAQKEIDEYKQKKDEEFKK 58 
                 57899***************************************999765 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.018
  ATP-synt_B  53 laeaeqqlkeAraeAaeiiknAkkeaeklkeeieae 88 
                 ++++e++ k+A+a+ +ei +++kk+++k+ ++++++
  KKY20922.1  68 KKAEEEANKDAEAKLKEIDQAGKKSGQKVIDDLIKA 103
                 466777888888888888888888888888887765 PP

>> V-ATPase_G_2  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2  14.6   3.5e-05     0.044       9     101 ..      11     103 ..       3     106 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.5e-05
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHH CS
  V-ATPase_G_2   9 eLaerEaeLdqrlEaArkeaereveaAeaeAarilreAeakakalqaeyeqelaeevarireeararaeaeaqavrkraearlqqAvelilka 101
                    L + E+e ++ + +Ar+   ++v+ A+ eA++ + e ++k  +  +++e+e+    ++ +eea++ aea+ +++ +++++  q+ ++  +ka
    KKY20922.1  11 TLLDAEKEAQKIVQKAREYRTKRVKDARTEAQKEIDEYKQKKDEEFKKFEAEQGSGNKKAEEEANKDAEAKLKEIDQAGKKSGQKVIDDLIKA 103
                   444455555555555666556666666666655555555555555555555555555566666666666666665555555555555555555 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9  19.2   8.3e-05      0.11      14     104 ..      13     106 ..       4     109 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.3e-05
                 SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS...-HHHHHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  14 spegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkl.e.keekeqe....lqkkeqelqqkqqqkaqelqkkqqellkpildkinkaike 104
                  ++ k+aq+ ++k ++ + + +++ ++e qk+++e+++k+ ++ +   e+  e     +k e+e ++++++k +e+ ++ ++  ++++d + ka+ +
  KKY20922.1  13 LDAEKEAQKIVQKAREYRTKRVKDARTEAQKEIDEYKQKKDEEfKkF-EA--EqgsgNKKAEEEANKDAEAKLKEIDQAGKKSGQKVIDDLIKAVID 106
                 577899******************************97776654332.22..124667777777777777777999999999888888777776654 PP

>> HypD  Hydrogenase formation hypA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.4   0.00025      0.32     221     302 ..       9      92 ..       6     108 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00025
                 HHHHHHHHHTT---EE..ETTTTT--TT--HHHHHHHHHHEEEEEEEETTTEEEEEEEEEE-GGGGGGBGGGT----S---SS- CS
        HypD 221 ilmlvkqleegeaeve..neYkrvvkeegnkkaqklieevfevrdaewRglgvipksglklreeyaefdaekkfelekeeekek 302
                 i +l++  +e ++ v+   eY+    ++  ++aqk i+e+ +++d+e++ +   + sg k  ee a+ dae+k++  +++ k++
  KKY20922.1   9 IQTLLDAEKEAQKIVQkaREYRTKRVKDARTEAQKEIDEYKQKKDEEFKKFEAEQGSGNKKAEEEANKDAEAKLKEIDQAGKKS 92 
                 5555655555555444115788888889999*****************************************998755554444 PP

>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   5.8   0.00034      0.44       6      73 ..      17      89 ..      11     107 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00034
     DUF2203  6 eeAnalLpllke.lleelralrkeleeleeeleeakaeaekse....aaeleaeleeleaeieelveeieelG 73
                +eA++++++ +e ++++++++r+e+++  +e +++k+e+ k+      + +++++ee+++ +e+ ++ei++ G
  KKY20922.1 17 KEAQKIVQKAREyRTKRVKDARTEAQKEIDEYKQKKDEEFKKFeaeqGSGNKKAEEEANKDAEAKLKEIDQAG 89
                6899999888773688999999999999999999999987665777777788888999999999999999988 PP

>> ATP11  ATP11 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  12.5   0.00066      0.85       4      93 ..      16     102 ..      14     109 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00066
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---.......SS--HHHHS- CS
       ATP11   4 ekYreKLeqkakeeglesieeLkeaykdkieekrkeaaaidleesksesekekeakasssektekkesaakskkkskskspvkpLssild 93 
                 ek ++K+ qka+e   + +++ +++++++i+e ++++++   e +k e+e+ + +k++++e+++ +e++ k+ ++  +ks+ k  +++++
  KKY20922.1  16 EKEAQKIVQKAREYRTKRVKDARTEAQKEIDEYKQKKDE---EFKKFEAEQGSGNKKAEEEANKDAEAKLKEIDQAGKKSGQKVIDDLIK 102
                 67789****************************999932...333333333344444444444444455555588888888888888775 PP

>> Ribosomal_L6e  Ribosomal protein L6e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   2.8     0.031        39      49      78 ..      16      47 ..       7      49 .. 0.75
   2 ?   11.2   5.8   0.00031       0.4      33      92 ..      50     113 ..      47     115 .] 0.74

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.031
  Ribosomal_L6e 49 kkkeeelfeekkek..kelseerkadqkavDk 78
                   +k+ ++++++++e   k+++++r++ qk++D+
     KKY20922.1 16 EKEAQKIVQKAREYrtKRVKDARTEAQKEIDE 47
                   356677885555444489*************7 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00031
  Ribosomal_L6e  33 klndeyFkkekkkkkk..kkkeeelfeekkek.kelsee.rkadqkavDkallaaikkekllkk 92 
                    + +de Fkk ++++ +  kk+eee  +++++k ke++++ +k+ qk +D+ + a i  ++++ +
     KKY20922.1  50 QKKDEEFKKFEAEQGSgnKKAEEEANKDAEAKlKEIDQAgKKSGQKVIDDLIKAVIDVQPQVPE 113
                    45789999987777767677788888666666677766526778***********999988766 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9  13.5   8.6e-05      0.11      26      79 ..       9      62 ..       2      71 .. 0.89
   2 ?   -0.1   4.0      0.41   5.3e+02      41      54 ..      72      85 ..      60     104 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.6e-05
     DUF3552 26 ekkiaeAeeeAkkiieeAkkeAeakkkealleakeeihklreelekelkerrne 79
                 + + +Ae+eA+ki+++A+    +  k a +ea+ ei +++++ ++e+k+ ++e
  KKY20922.1  9 IQTLLDAEKEAQKIVQKAREYRTKRVKDARTEAQKEIDEYKQKKDEEFKKFEAE 62
                577899******************************************987666 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.41
     DUF3552 41 eeAkkeAeakkkea 54
                eeA+k+Aeak ke+
  KKY20922.1 72 EEANKDAEAKLKEI 85
                34444444444443 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  10.5    0.0019       2.5      21      78 ..      41      96 ..      24     113 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0019
                BHHHHHHB-..BHHHHHHHHHHHH...HHHHHHH.HHHHHHHHHHHHHHHHHHHHHH.. CS
       DUF16 21 TrkqlnefkdsnkqrLkkieakvdklgeqinkle.qkvekqgekikelkveqkaqgeel 78
                 +k+++e+k+  ++++kk+ea+  +     +k e ++ +  ++k+ke+ +  k+ g+++
  KKY20922.1 41 AQKEIDEYKQKKDEEFKKFEAEQGS---GNKKAEeEANKDAEAKLKEIDQAGKKSGQKV 96
                69******************98653...3333330444556778888888888888854 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   9.0    0.0028       3.6     240     353 ..      16     102 ..       2     112 .. 0.44

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0028
        SAPS 240 ekkgeeivkerDevrerlleel.tseeealedvsdeaskeesaesedltdkdedvsleesksakdenkesdesesdtaeesseededdasseesalaee 337
                 ek++++iv++  e r++  +   t++++++++ ++++++e ++ +++  + +++                             e+e ++ +e ++++ +
  KKY20922.1  16 EKEAQKIVQKAREYRTKRVKDArTEAQKEIDEYKQKKDEEFKKFEAEQGSGNKK----------------------------AEEEANKDAEAKLKEID 86 
                 333344433333333333322223333333333333333333333333333333............................33333333344444555 PP

        SAPS 338 teeklrkkpvvGDlLK 353
                 ++ k +++ v+ Dl+K
  KKY20922.1  87 QAGKKSGQKVIDDLIK 102
                 5555556666666666 PP

>> KfrA_N  Plasmid replication region DNA-binding N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   3.9   0.00035      0.45      62     104 ..       8      55 ..       2      65 .. 0.80
   2 ?    1.6   0.9      0.34   4.3e+02      74      96 ..      69      91 ..      65     105 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00035
      KfrA_N  62 alaeal.....laalwqaaleeaeeelaaaraelqaaraaleaeraea 104
                  ++++l     ++++ q+a e   ++++ ar+e+q+++++ +++++e 
  KKY20922.1   8 GIQTLLdaekeAQKIVQKAREYRTKRVKDARTEAQKEIDEYKQKKDEE 55 
                 5666666666678999999999999******************99775 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.34
      KfrA_N 74 aaleeaeeelaaaraelqaaraa 96
                +a eea+++ +a  +e+++a ++
  KKY20922.1 69 KAEEEANKDAEAKLKEIDQAGKK 91
                46666666666666666666554 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  11.1    0.0062       7.9     121     201 ..      17      87 ..       2     107 .. 0.43

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0062
     DUF4407 121 kelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelae 201
                 ke+++ +++a + ++++ ++ ++++q+eid+ +++ d++ +++++e             G+ +a +e++++++a+ +e+++
  KKY20922.1  17 KEAQKIVQKAREYRTKRVKDARTEAQKEIDEYKQKKDEEFKKFEAEQ----------GSGNKKAEEEANKDAEAKLKEIDQ 87 
                 22223333333333333333333333333333333333333333221..........123333333334444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3078  (0.171677); expected 358.6 (0.02)
Passed bias filter:                      835  (0.0465726); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 748.30
//
Query:       KKY20923.1  [L=84]
Description: putative cytochrome c oxidase assembly protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-24   85.5   1.0    2.5e-24   85.3   1.0    1.0  1  PET117          PET assembly of cytochrome c oxidase, mitocho
  ------ inclusion threshold ------
      0.043   13.6   0.0      0.047   13.4   0.0    1.1  1  Formyl_trans_N  Formyl transferase
      0.073   12.9   0.2      0.087   12.6   0.2    1.1  1  RNA_pol_Rpb1_6  RNA polymerase Rpb1, domain 6


Domain annotation for each model (and alignments):
>> PET117  PET assembly of cytochrome c oxidase, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   1.0   4.2e-28   2.5e-24       1      70 []       4      69 ..       4      69 .. 0.98

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 4.2e-28
      PET117  1 AsKitLglsvlltaatvvgVHylQrlerealrqGvirDaerqaeKerkrkenkaeleeqkelrkkyekvQ 70
                AsK+tL ++++ t+++v++VH+ Q +e++a+++Gv+rD+e+q+ K    +e++a++e+q++l+++y+k Q
  KKY20923.1  4 ASKMTLLGTIVGTVGIVTFVHWAQGAEKAAMHAGVVRDMEQQRIK----RERQADFEMQRALEEEYKKLQ 69
                8********************************************....6******************98 PP

>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.9e-06     0.047      29      78 ..      15      64 ..       3      71 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.9e-06
                    EEEEEEESCTTEHCHHHHHHCCHCCCECHHCCSCCCCCCCHHHHHHHHCT CS
  Formyl_trans_N 29 dvvlvvsnkdkaaglekaeaasiptkvfeekkleprsqfeeelaeelkel 78
                      v +v+    a+g+eka+++  +++++e++++++++q++ e++++l+e+
      KKY20923.1 15 GTVGIVTFVHWAQGAEKAAMHAGVVRDMEQQRIKRERQADFEMQRALEEE 64
                    567888899999*********************************99875 PP

>> RNA_pol_Rpb1_6  RNA polymerase Rpb1, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   1.5e-05     0.087      37      67 ..      39      69 ..      25      72 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.5e-05
                    -TTTSSSHH..HHTT-TTHHHHHHHHHHHHH CS
  RNA_pol_Rpb1_6 37 lkelleeevveeiredaelqelldeEyeqLk 67
                    ++++ ++ +++e + d+e+q++l+eEy++L+
      KKY20923.1 39 VRDMEQQRIKRERQADFEMQRALEEEYKKLQ 69
                    4566788899999*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       894  (0.0498633); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.33s 00:00:00.77 Elapsed: 00:00:00.48
# Mc/sec: 526.10
//
Query:       KKY20924.1  [L=1341]
Description: putative ankyrin repeat protein nuc-2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-29  101.2   2.0    1.3e-10   41.7   0.1    4.1  4  Ank_2     Ankyrin repeats (3 copies)
    3.2e-25   88.2   4.7    4.7e-12   46.2   0.0    5.7  7  Ank_4     Ankyrin repeats (many copies)
    5.3e-17   62.8  19.5    1.9e-07   31.4   0.3    4.3  4  SPX       SPX domain
    1.3e-15   55.9   0.2      0.002   18.5   0.0    6.3  5  Ank_3     Ankyrin repeat
    6.9e-15   54.9   1.4     0.0006   20.1   0.0    4.9  4  Ank_5     Ankyrin repeats (many copies)
    2.8e-13   50.2   0.0    1.3e-12   48.0   0.0    2.0  3  GDPD      Glycerophosphoryl diester phosphodiesterase family
    8.9e-08   32.3   0.0    2.4e-05   24.5   0.0    2.9  2  DUF4129   Domain of unknown function (DUF4129)
    2.9e-06   27.5   6.3        1.2    9.7   0.1    6.1  5  Ank       Ankyrin repeat
    0.00081   19.4   0.2     0.0077   16.2   0.0    2.5  2  NICE-3    NICE-3 protein


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.2e-09   2.4e-06      12      74 ..     282     356 ..     269     366 .. 0.74
   2 !   41.7   0.1   6.5e-14   1.3e-10       1      80 [.     306     396 ..     306     399 .. 0.87
   3 !   21.3   0.5   1.6e-07   0.00031      25      78 ..     368     427 ..     358     432 .. 0.83
   4 !   34.1   0.0   1.5e-11   3.1e-08      15      75 ..     450     524 ..     438     531 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.2e-09
       Ank_2  12 lvklLl.egadpn....k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLle 74 
                 ++++Ll  g  +n    +  n+++ Lh Aa++g  e++++ l+        d +gr pLhyA+ +g+  +++ L+ 
  KKY20924.1 282 ALRILLeTG-VVNmlaeDdiNERNCLHKAAISGRDEVLQTALQSgvdpsrSDVYGRIPLHYACLKGRVAMAQALIA 356
                 566666423.1222332135689**********99999****977566556699******************9994 PP

  == domain 2  score: 41.7 bits;  conditional E-value: 6.5e-14
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh.......adndgrtpLhyAarsghleivklLlekgadin 80 
                 Lh Aa +g +e+++  l +g+dp+  +  g+ +LhyA+ +g + ++++L+++       +d d+ tpL++++   +  ++ lLl+++a i+
  KKY20924.1 306 LHKAAISGRDEVLQTALqSGVDPSrsDvYGRIPLHYACLKGRVAMAQALIAAapstidqLDHDNFTPLIHSITRHQNACAHLLLDQNARID 396
                 8*******999******9*****98549*************99*******9667776667799*****99998766699999998877765 PP

  == domain 3  score: 21.3 bits;  conditional E-value: 1.6e-07
       Ank_2  25 ngktaLhyAakngnleivklLleh...ad...ndgrtpLhyAarsghleivklLlekgad 78 
                 ++ t+L++++ + ++ ++ lLl++   +d   ++ + pL +A+++g  ei+ lLl++ga 
  KKY20924.1 368 DNFTPLIHSITRHQNACAHLLLDQnarIDpvsESDHIPLNLACQHGAAEIAALLLQRGAR 427
                 678******999888999****97777335558899*******************99986 PP

  == domain 4  score: 34.1 bits;  conditional E-value: 1.5e-11
       Ank_2  15 lLl....egadpn..k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlek 75 
                 lLl    +gad++  +    +t+L++Aa++g +e v+ Ll++      +d++g + ++yA ++g+le++klL e+
  KKY20924.1 450 LLLvlrdYGADLDqkDklYQWTPLFHAASEGRVEGVRCLLDQgvdidvLDEKGLSTMYYATWEGQLECMKLLWER 524
                 33345688999987527999***********9999******88776666699*********99********9876 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       2.1   4.2e+03      41      55 .]      29      43 ..      29      43 .. 0.93
   2 !    8.0   0.0    0.0022       4.4      11      43 ..     277     310 ..     269     310 .. 0.88
   3 !   46.2   0.0   2.4e-15   4.7e-12       2      55 .]     303     355 ..     302     355 .. 0.97
   4 ?    1.2   0.1       0.3     6e+02      30      55 .]     364     389 ..     362     389 .. 0.87
   5 !    6.8   0.5    0.0051        10      12      55 .]     380     422 ..     369     422 .. 0.87
   6 ?    4.6   0.1     0.026        51       8      51 ..     409     450 ..     405     454 .. 0.85
   7 !   30.0   0.0   2.8e-10   5.7e-07       2      54 ..     470     521 ..     469     521 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.1
       Ank_4 41 iAakrgnveilklLl 55
                +Aa++ n+++lk L+
  KKY20924.1 29 YAASFLNYKALKKLI 43
                79**********997 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0022
       Ank_4  11 sgrlelvrlLlekgadinaq..dnrsGetalhiAa 43 
                 + + e++r+Lle+g+ +n+   d+++ +++lh+Aa
  KKY20924.1 277 EAPDEALRILLETGV-VNMLaeDDINERNCLHKAA 310
                 567899********9.999988999999*****97 PP

  == domain 3  score: 46.2 bits;  conditional E-value: 2.4e-15
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 + +Lh+aaisgr e+++  l++g+d+ ++ + +G+ +lh+A+++g+v +++ L+
  KKY20924.1 303 RNCLHKAAISGRDEVLQTALQSGVDPSRS-DVYGRIPLHYACLKGRVAMAQALI 355
                 789*************************9.**********************98 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.3
       Ank_4  30 qdnrsGetalhiAakrgnveilklLl 55 
                 q++ + +t+l++ + r +  +++lLl
  KKY20924.1 364 QLDHDNFTPLIHSITRHQNACAHLLL 389
                 458999***********999999997 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.0051
       Ank_4  12 grlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                  +  +++lLl+++a i+ + ++s+  +l  A+++g  ei+ lLl
  KKY20924.1 380 HQNACAHLLLDQNARIDPV-SESDHIPLNLACQHGAAEIAALLL 422
                 5567899************.999999*********999999887 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.026
       Ank_4   8 aaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveil 51 
                 a+++g  e+++lLl++ga     ++++G+ + h +a+ ++++ l
  KKY20924.1 409 ACQHGAAEIAALLLQRGAR--LLPDAEGLYPQHLVARSEQPSQL 450
                 8999999***********8..45799********9999998776 PP

  == domain 7  score: 30.0 bits;  conditional E-value: 2.8e-10
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 +t+L++aa++gr+e vr Ll++g+di+   ++ G++ +++A + g++e+ klL
  KKY20924.1 470 WTPLFHAASEGRVEGVRCLLDQGVDIDVL-DEKGLSTMYYATWEGQLECMKLL 521
                 69**************************9.*********************98 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   9.8e-08    0.0002       2      34 ..      14      48 ..      13      69 .. 0.82
   2 !   19.7   1.4   3.4e-07   0.00067     179     217 ..      70     108 ..      53     126 .. 0.83
   3 !   31.4   0.3   9.5e-11   1.9e-07     336     375 ..     130     169 ..     110     178 .. 0.84
   4 ?    2.4   0.6     0.062   1.2e+02      93     160 ..    1229    1295 ..    1105    1323 .. 0.56

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.8e-08
         SPX  2 KFakeLeenlv..pEWrdaYldYkqLKKlIkkvqr 34
                KF+k+ +      pE  + +l+Yk+LKKlIk++++
  KKY20924.1 14 KFGKQIQKRQLdlPEYAASFLNYKALKKLIKQLSA 48
                9******99999********************998 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 3.4e-07
         SPX 179 plraekeFferLdseLnkvetFykakeeefterlesLrk 217
                 +  ++++Ff rL  e +kv+ Fy +ke ef  rl +L +
  KKY20924.1  70 LRANKEVFFFRLEREIEKVNVFYLQKEAEFAIRLRTLVD 108
                 333899****************************99975 PP

  == domain 3  score: 31.4 bits;  conditional E-value: 9.5e-11
         SPX 336 lkkafvelYrgLelLKsYqeLNrtAFrKIlKKfDKvtalt 375
                 l + f+++ ++L +L+++ e+N+tA++KIlKK+DK+++  
  KKY20924.1 130 LVEGFQQFDNDLNKLQQFVEVNETAISKILKKWDKTSKVS 169
                 6678999999**************************9874 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.062
         SPX   93 slprrsplsrssrssssygglvssppsansssssddssesnpadssssssssesesssssspsllrrl 160 
                   +++ ++l+ +++s   y+g +++ p + +ss+ dd+++   ++++ ss +++ +++  ++++llr +
  KKY20924.1 1229 LTSQIRELAPFEDSPDVYEGYETPTPASLHSSNVDDNHSTL-SQTTGSSAQTTRSTNVAEKSELLRPI 1295
                  44444455555555555666666666555555555555555.12222222333333333333333333 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0013       2.5       2      29 ..     302     328 ..     301     330 .. 0.91
   2 !   12.1   0.0   0.00012      0.24       5      23 ..     338     356 ..     334     363 .. 0.87
   3 ?    5.6   0.2     0.016        31       5      27 ..     405     426 ..     405     429 .. 0.91
   4 ?    2.4   0.0      0.17   3.3e+02       2      30 ..     434     462 ..     433     463 .. 0.84
   5 !   18.5   0.0   9.9e-07     0.002       1      30 [.     468     496 ..     468     497 .. 0.95

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0013
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                  ++ Lh Aa sg+ e+++  l+  g+d+
  KKY20924.1 302 ERNCLHKAAISGRDEVLQTALQ-SGVDP 328
                 5889******************.89998 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00012
       Ank_3   5 pLhlAarsgnleivkfLle 23 
                 pLh+A++ g+++++++L+ 
  KKY20924.1 338 PLHYACLKGRVAMAQALIA 356
                 9****************98 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.016
       Ank_3   5 pLhlAarsgnleivkfLlenkga 27 
                 pL lA+ +g  ei+ +Ll+ +ga
  KKY20924.1 405 PLNLACQHGAAEIAALLLQ-RGA 426
                 89**********9999999.887 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.17
       Ank_3   2 GetpLhlAarsgnle.ivkfLlenkgadvn 30 
                 G +p hl+ars  ++ ++  L + +gad++
  KKY20924.1 434 GLYPQHLVARSEQPSqLLLVLRD-YGADLD 462
                 67777*********778888888.****97 PP

  == domain 5  score: 18.5 bits;  conditional E-value: 9.9e-07
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +++tpL++Aa+ g++e v+ Ll+  g+d++
  KKY20924.1 468 YQWTPLFHAASEGRVEGVRCLLD-QGVDID 496
                 689********************.9***98 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00079       1.6      12      53 ..     300     339 ..     286     339 .. 0.83
   2 !   20.1   0.0     3e-07    0.0006       5      54 ..     325     374 ..     322     376 .. 0.93
   3 !    9.8   0.1   0.00051         1      19      50 ..     405     435 ..     388     441 .. 0.75
   4 !   16.9   0.0   2.9e-06    0.0058       5      56 .]     458     509 ..     448     509 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00079
       Ank_5  12 ldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                  +++  ++Lh Aa  g+ +v++  l  g+d+   d +G+ +l
  KKY20924.1 300 INER--NCLHKAAISGRDEVLQTALQSGVDPSRSDVYGRIPL 339
                 3333..*******************************99886 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 3e-07
       Ank_5   5 gpadvnrldgggntpLhvAakygaadvvrlLl.argadlnltdsrGltald 54 
                 g +d+ r+d +g  pLh+A+ +g+  +++ L+ a ++ +++ d ++ t+l 
  KKY20924.1 325 G-VDPSRSDVYGRIPLHYACLKGRVAMAQALIaAAPSTIDQLDHDNFTPLI 374
                 4.89999******************************************96 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00051
       Ank_5  19 pLhvAakygaadvvrlLlargadlnltdsrGl 50 
                 pL++A+ +gaa+++ lLl  + ++ l d++Gl
  KKY20924.1 405 PLNLACQHGAAEIAALLL-QRGARLLPDAEGL 435
                 9*****************.6666666666665 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 2.9e-06
       Ank_5   5 gpadvnrldgggn..tpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 g ad++ +d+  +  tpL +Aa+ g+ + vr Ll+ g+d+++ d+ Gl+ + +A
  KKY20924.1 458 G-ADLDQKDKL-YqwTPLFHAASEGRVEGVRCLLDQGVDIDVLDEKGLSTMYYA 509
                 4.555555543.235********************************9998887 PP

>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.9   7.8e+03      95     125 ..     144     174 ..     114     205 .. 0.50
   2 !   48.0   0.0   6.5e-16   1.3e-12      23     235 ..     630     874 ..     621     889 .. 0.78
   3 ?   -2.6   0.0       1.9   3.7e+03     118     149 ..    1013    1045 ..    1000    1050 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.9
                 HHHHHHHHHHCCSEEEEEEECCCCCCCHHHH CS
        GDPD  95 leevlkkpqnvglnieikipmlseakeeeel 125
                 l+++++ ++    +i +k++ +s++++ +el
  KKY20924.1 144 LQQFVEVNETAISKILKKWDKTSKVSKTKEL 174
                 3333333333333444444444444333333 PP

  == domain 2  score: 48.0 bits;  conditional E-value: 6.5e-16
                 T-SEEEEEEEE-TTS-EEE-SSSBSTTTCSCCCH.BGGGS-HHHHHTST.............ECCTTCCCCSCCCSSGCC................B.. CS
        GDPD  23 GadyiEfDvqlTkDgvpVvlHDfnldrttdvagrldvkdltleelkrld.............kiakenkaqlsenrvrle................fpf 92 
                   dy+ + vqlT+DgvpV++   ++d    + +   + +lt+ee+ +l                                                ++f
  KKY20924.1 630 TGDYVQLFVQLTRDGVPVLYPRYKIDSPNFKMP---ICQLTYEEFTELGsritgttaedkfrV----------------IatqtssslellhqnltSSF 709
                 56999999**************99999888777...*************77666666555541................233333444444445669** PP

                 .BHHHHHHHHHHCCSEEEEEEECCCCCCCHHHH.HHTCHHHCCCCCSCHHTT..ST.........TCSCEEEESTHHHHHHHHHTCTCTEEEEEEHHHH CS
        GDPD  93 ptleevlkkpqnvglnieikipmlseakeeeel.qivkeilksvdeilkkvlkkad.........krkvifssfnpdilkllrekqpklpllflteggt 181
                   l +vl+   +  ++i+  +     a+e  ++ +   +i+++ d il++v+++a+          r ++f+s+np+i+++l+ kqp++p+l+  ++  
  KKY20924.1 710 LSLRDVLAN-LSTSIHINLTVVYPTPAEEVALGlRSTPDINTYADAILTDVFEHARfakrqdpdfMRSIVFQSYNPNICTALNWKQPNYPVLL-GNDLG 806
                 *******76.4444444444444444445555579***************888875333322333367**********************975.55555 PP

                 HHC-E...............EECHCCCCCCCTCCCCHHCCCHCCCEB.CHHHHHHHTT-EEEEBSB-T CS
        GDPD 182 eaead..............ssleraakfakadallgevsavaeglgdpdlVkraksrglvvhvytvnn 235
                 ea+++               s + aa+ a++ +++g +  ++++ ++p l + +k+ glv+++ t ++
  KKY20924.1 807 EARDPlgpgpavqssghtsMSIKDAARLAQSNNFMGLICRSSILEMIPALTETIKELGLVLVADTSDK 874
                 5566668889**9999998788899999999999999999999999*******************997 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.9
                  CCCCHHHH.HHTCHHHCCCCCSCHHTT..STTC CS
        GDPD  118 eakeeeel.qivkeilksvdeilkkvlkkadkr 149 
                    +e+e   ++v+++++ v e+ ++v+++ +++
  KKY20924.1 1013 IPIEHEDVrKHVRQMVQKVLERNAVVAYNVRPK 1045
                  445566666899999999999998888887765 PP

>> DUF4129  Domain of unknown function (DUF4129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.022        45      23      55 ..     735     769 ..     732     772 .. 0.74
   2 !   24.5   0.0   1.2e-08   2.4e-05      14      66 ..    1159    1213 ..    1154    1216 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.022
     DUF4129  23 rEyarrv.riapspaaalaa.laelfeearYGgrp 55 
                  E ++   r +p+  + ++a l+++fe+ar++ r+
  KKY20924.1 735 AEEVALGlRSTPDINTYADAiLTDVFEHARFAKRQ 769
                 4444333688888888888845*********9875 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 1.2e-08
     DUF4129   14 ldrrpgeTprEyarrv..riapspaaalaalaelfeearYGgrpasaeeyrrlve 66  
                  l+r+  ++ r+y+ ++       p a  ++++el+e ar++g p++++e+rrl++
  KKY20924.1 1159 LERPDNMSLRDYVSHLssLNLINPPALSEQFLELYEYARFSGDPLTEDEFRRLMS 1213
                  678999**********66333347788899***********************86 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1   0.00059       1.2       1      23 [.     334     356 ..     334     367 .. 0.76
   2 ?    2.7   0.1     0.099     2e+02       1      25 [.     368     393 ..     368     398 .. 0.75
   3 ?    4.7   0.7     0.023        45       5      25 ..     405     426 ..     403     432 .. 0.87
   4 ?    0.9   0.0      0.38   7.5e+02      20      32 .]     450     466 ..     446     466 .. 0.76
   5 !    5.9   0.0    0.0095        19       3      31 ..     470     499 ..     468     500 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00059
                 TSBBHHHHHHHHTTHHHHHHHHT CS
         Ank   1 dGnTPLHlAatngkkriiklLLh 23 
                 +G+ PLH+A+  g + ++++L+ 
  KKY20924.1 334 YGRIPLHYACLKGRVAMAQALIA 356
                 6899******8898889999992 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.099
                 TSBBHHHHHHHHTTHHHHHHHH.TTT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGA 25 
                 d +TPL   +t+ +  +++lLL + A
  KKY20924.1 368 DNFTPLIHSITRHQNACAHLLLdQNA 393
                 679*****89555556*****96555 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.023
                 HHHHHHHHTTHHHHHHHH.TTT CS
         Ank   5 PLHlAatngkkriiklLL.hGA 25 
                 PL lA++ g ++i+ lLL +GA
  KKY20924.1 405 PLNLACQHGAAEIAALLLqRGA 426
                 999***9999********6698 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.38
                 HHH...T.TTSTTCBTT CS
         Ank  20 lLL...h.GAnlnaldn 32 
                 lLL   + GA+l+++d+
  KKY20924.1 450 LLLvlrDyGADLDQKDK 466
                 555577459*****995 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.0095
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnald 31 
                 +TPL  Aa++g ++ ++ LL +G +++ ld
  KKY20924.1 470 WTPLFHAASEGRVEGVRCLLdQGVDIDVLD 499
                 8**********9999999**99***99887 PP

>> NICE-3  NICE-3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.56   1.1e+03     108     172 ..     150     216 ..     134     218 .. 0.73
   2 !   16.2   0.0   3.9e-06    0.0077     118     179 ..    1158    1218 ..    1153    1220 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.56
      NICE-3 108 l.eselesldkklgrhp..genlrsyLlrlrssplksvrkslidqlldlyehARhgpeeFgeeeylky 172
                 + e+ + ++ kk+ +++  ++    yL r+  ++ +  +++ + +l d   +AR + e++ e e  +y
  KKY20924.1 150 VnETAISKILKKWDKTSkvSKTKELYLQRAV-ELQPCFNRDVLRDLSDRATTARLDLEAWAEGENIQY 216
                 4367777777777777755566667888877.4445557788999*********99999998876665 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 3.9e-06
      NICE-3  118 klgrhpgenlrsyLlrlrssplksvrkslidqlldlyehARhgpeeFgeeeylkyqelleeL 179 
                   l+r+ + +lr y+ +l+s +l + + +l +q+l+lye AR++ ++ +e+e+ ++++++ e+
  KKY20924.1 1158 FLERPDNMSLRDYVSHLSSLNLIN-PPALSEQFLELYEYARFSGDPLTEDEFRRLMSIFAEI 1218
                  56899999**********777776.57899**************************998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1015  (0.0566122); expected 358.6 (0.02)
Passed bias filter:                      740  (0.0412739); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.07u 0.36s 00:00:01.43 Elapsed: 00:00:00.54
# Mc/sec: 7434.89
//
Query:       KKY20925.1  [L=150]
Description: hypothetical protein UCRPC4_g03932 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      118  (0.00658152); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 1149.71
//
Query:       KKY20926.1  [L=158]
Description: hypothetical protein UCRPC4_g03933 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1132.25
//
Query:       KKY20927.1  [L=286]
Description: putative integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-34  119.5   8.5    1.8e-34  119.3   8.5    1.0  1  SUR7           SUR7/PalI family
  ------ inclusion threshold ------
      0.028   14.2   0.1      0.067   13.0   0.1    1.7  1  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
       0.05   13.1   1.6      0.086   12.4   1.6    1.4  1  Stevor         Subtelomeric Variable Open Reading frame
      0.083   12.8  10.9      0.016   15.2   6.1    2.1  2  Fig1           Ca2+ regulator and membrane fusion protein Fig
        3.6    8.4  18.7        1.5    9.6  14.4    2.5  2  DUF4282        Domain of unknown function (DUF4282)


Domain annotation for each model (and alignments):
>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3   8.5     5e-38   1.8e-34       3     211 ..       6     263 ..       4     264 .. 0.94

  Alignments for each domain:
  == domain 1  score: 119.3 bits;  conditional E-value: 5e-38
        SUR7   3 lillflslaalilllfailgsiknstpltsiylskfdlsgldlaqi.....................................gladvysfgvwgyC.. 62 
                 l+++++ laalil+l+++l+++ + ++l++  ++++++s l  +++                                     +l+d+y+ +v +yC  
  KKY20927.1   6 LFPVLCALAALILSLLCLLAGT-SRSFLQNADILTVNVSRLGHTSVfntsdddgslissiandiegeindlisnatediaqalDLHDFYKAHVMNYCeg 103
                 78999*****************.9999************77777668**************************************************** PP

        SUR7  63 .......dnsdvnytkCskpkagypfdp..l..eelnsesngkvd.lPsnlrktlsklnnltkalfilhiialvlsfislvvgllaicvspdnsrllsf 149
                          +++n t+Csk    + fd   +  eel++++n +   +P+ +++ + +l  ++k++ +++ i++++ +++l+++l++++    n r+  f
  KKY20927.1 104 yyanstnPGTSKNITYCSKRNGLFHFDLtaIiqEELGNSTNLTDIhWPDGIEDGIEALEVASKVMAVFYYIGIAFAALALLTALVGVF---ANGRISAF 199
                 ****99888999***************5563588888888866548******************************************...******** PP

        SUR7 150 lnlllsvlsflatllaalldtllfvfvrkkin..lkefgikaslglkflafaWlalaaallvvi 211
                 +n+++ +l+fla+ +a++++t++ v+v++++n    ++gi a  g++fl+++W+a +++ll+++
  KKY20927.1 200 VNWIVDILAFLALGIASAISTVIAVKVTHVVNkyGADIGIAAYKGKTFLGMTWAATVVMLLASF 263
                 *********************************999************************9976 PP

>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.9e-05     0.067      31      76 ..       5      50 ..       2      53 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.9e-05
                   TTSHHHHHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HHHH CS
  Dimer_Tnp_hAT 31 skyPnlsklardvLsipvssaasErsFstlgkvllesrnsleplnv 76
                   + +P+l+ la  +Ls+ +  a + rsF +   +l+ + ++l + +v
     KKY20927.1  5 ALFPVLCALAALILSLLCLLAGTSRSFLQNADILTVNVSRLGHTSV 50
                   68*************************9999999999999988776 PP

>> Stevor  Subtelomeric Variable Open Reading frame
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.6   2.4e-05     0.086     152     266 ..     157     280 ..     112     285 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.4e-05
      Stevor 152 gicvcsvgs...vlltliglaaakaaavaa.kvalsaealkklasslsilnlfsesslesalkaavsaaaasdlagta.....asaassafepygiaal 241
                 gi +  v+s   ++  +ig+a+a+ a ++a   ++ +  ++++++ +  +  f +  ++sa+++ ++++++  +++       a++   +f  +  aa 
  KKY20927.1 157 GIEALEVASkvmAVFYYIGIAFAALALLTAlVGVFANGRISAFVNWIVDILAFLALGIASAISTVIAVKVTHVVNKYGadigiAAYKGKTFLGMTWAAT 255
                 555555555111556789*********999766677778888888777777777777777777444444443333333000235666678888888888 PP

      Stevor 242 vllilavvliiLYiwlyrRRKnSwk 266
                 v+++la  l ++     rRR+  + 
  KKY20927.1 256 VVMLLASFLWLMECCAGRRRRTTYT 280
                 8888888888888888888888774 PP

>> Fig1  Ca2+ regulator and membrane fusion protein Fig1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2      0.31   1.1e+03      83      97 ..      13      27 ..       4      47 .. 0.72
   2 ?   15.2   6.1   4.4e-06     0.016      70     184 ..     165     267 ..     136     270 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.31
        Fig1 83 mvaiiLtlllfllll 97
                ++a+iL ll++l  +
  KKY20927.1 13 LAALILSLLCLLAGT 27
                578888888888764 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 4.4e-06
        Fig1  70 kkfsdnvvhpyllmvaiiLtlllfllllyfplgseipllPfkskavskvalvlsflllllwlvgalwqhvassaastlveeasmgi.vkskvGkkaeal 167
                 +k+    v+ y+ ++  +L+ll  l+ ++        + +        v+ ++ +l++l++++++  ++v ++  +++v++    i + + +Gk+  ++
  KKY20927.1 165 SKVM--AVFYYIGIAFAALALLTALVGVFAN----GRISA-------FVNWIVDILAFLALGIASAISTVIAVKVTHVVNKYGADIgIAAYKGKTFLGM 250
                 4443..3444555555555555555554422....22333.......4445667778888899888888888889999999999999************ PP

        Fig1 168 gWfafaflllvclglwv 184
                 +W+a +++ll  ++ ++
  KKY20927.1 251 TWAATVVMLLASFLWLM 267
                 ****9999997765554 PP

>> DUF4282  Domain of unknown function (DUF4282)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.1     4e+03      20      31 ..      15      26 ..       5      46 .. 0.60
   2 ?    9.6  14.4   0.00043       1.5       8      61 ..     163     211 ..     162     273 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.1
     DUF4282 20 givlialvllsl 31
                +++l++l ll++
  KKY20927.1 15 ALILSLLCLLAG 26
                233333444444 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00043
     DUF4282   8 itpkllkvlYilgivlialvllslivgafaalseslsagggllllllaviafll 61 
                 +++k++ v+Y++gi+++al+ll+++vg+fa+        ++++ +++ ++afl+
  KKY20927.1 163 VASKVMAVFYYIGIAFAALALLTALVGVFANG-----RISAFVNWIVDILAFLA 211
                 6899**************************99.....44444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       933  (0.0520386); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.50
# Mc/sec: 1730.83
//
Query:       KKY20928.1  [L=390]
Description: putative mannitol-1-phosphate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-45  153.9   0.0    7.9e-45  153.3   0.0    1.3  1  Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
    2.8e-16   60.0   1.6    1.2e-15   58.0   0.3    2.1  2  Mannitol_dh    Mannitol dehydrogenase Rossmann domain
     0.0036   15.7   0.0      0.005   15.2   0.0    1.1  1  DRIM           Down-regulated in metastasis
  ------ inclusion threshold ------
      0.031   13.9   0.0      0.078   12.6   0.0    1.6  1  Nucleolin_bd   Nucleolin binding domain


Domain annotation for each model (and alignments):
>> Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.3   0.0   1.8e-48   7.9e-45       4     236 ..     156     368 ..     153     377 .. 0.91

  Alignments for each domain:
  == domain 1  score: 153.3 bits;  conditional E-value: 1.8e-48
  Mannitol_dh_C   4 gfpntmVDRIvpaatddelakleeelgveDplavtvEpFiqWviednfvkgrpelelvgvelvedvepyeerKlriLNggHaalaylgalaGyqti 99 
                     f n+++DRIvp            +++ + +l+v+ E F++W +e+  +k   + e+ gv+ ved+epy+erKl+++N++Ha+ ay g ++G+qti
     KKY20928.1 156 EFGNSAIDRIVP------------TQKPDAGLNVQIERFYEWCVEKRGFKS-GHPEIHGVHWVEDLEPYIERKLFTVNTSHATAAYFGHYKGLQTI 238
                    699*********............5788899****************9999.89****************************************** PP

  Mannitol_dh_C 100 heamkdeeiraivkkllteevapllkkv..deqdleeYadkiieRFsNpyikdtvervaldGsqklpkrilpslrrlikagtlpellalgvalwir 193
                    he++ d+ei+++v+++l+e+  ++++k+   ++d e+Y ++ii R sNpy++d   rv++      p r+l+  +r+i   +  +l ++g  +  +
     KKY20928.1 239 HECLSDPEIKEAVREALSETSHLIVDKHeiTDEDQEKYVESIIRRISNPYLEDVPDRVGRA-----PLRKLSRKERFIG--PASQLAERG-DKVDA 326
                    ****************************888999***************************.....************9..*********.999** PP

  Mannitol_dh_C 194 ylegvaeggnyieke.Dpqleelqeaallakervkavlaekeil 236
                    +l+gv+++  ++++e D+++ +l+e  +l+ ++ + + ae ++l
     KKY20928.1 327 LLKGVEMALRFQKVEgDDESFKLAE--ILSSKSAEDATAELTGL 368
                    *******999877654777777777..66666666666665555 PP

>> Mannitol_dh  Mannitol dehydrogenase Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.3   2.6e-19   1.2e-15       3     150 ..       8     127 ..       6     128 .. 0.93
   2 ?    0.6   0.0      0.12   5.5e+02      41      76 ..     249     285 ..     236     297 .. 0.80

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 2.6e-19
                  EEEES-SHHHHHTHHHHHHHHTT--TT-EEEEEE-STTHHHHHHHTTTT-EEEEE-SSS---EEEE--EEEEEEGGG-HHHHHHHHTSTT--EEEE-- CS
  Mannitol_dh   3 ivhfGaGnfhRahqayiddLlaeegldwgivevnlrevdareaLkaqdelyvviekgeeskearlvgsvnavlsveedlealieamaePeirivsltv 100
                  +vhfG Gn++R+   ++ +  +e+g+++ +++v ++  ++   L++ ++++v+ ++  e+++++++ + +a++s++++ ++ ++ +++  + +v+ +v
   KKY20928.1   8 AVHFGGGNIGRG---FVAEFHHETGYEVVFIDVVDELINK---LNTVKSYNVTEIS-DEGESVKEIHNYRAINSKTNE-DDAVDVISK--AVVVTCAV 95 
                  7***********...88898999*****************...**********999.8999***************99.9999*****..******** PP

                  -TTTBETTTEB-TTSHHHHHHHH-TTHHHHHHHHHHHTT----EEEE-SS CS
  Mannitol_dh 101 tekGidatgeletdlpaiaadlakpellvealkrrraaglkpltiisCdn 150
                  ++          + l+ ia  +ak+      +++r    +kpl++i+C+n
   KKY20928.1  96 GP----------NILKFIAPVIAKG------IQKR--TIEKPLAVIACEN 127
                  **..........*************......4554..4567********9 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.12
                  HH.HHHHHTTTT-EEEEE-SSS---EEEE--EEEEEE CS
  Mannitol_dh  41 da.reaLkaqdelyvviekgeeskearlvgsvnavls 76 
                  +a reaL++  +l v   + +++++++ v+s+ + +s
   KKY20928.1 249 EAvREALSETSHLIVDKHEITDEDQEKYVESIIRRIS 285
                  3458899999999999999999999999999876554 PP

>> DRIM  Down-regulated in metastasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.1e-06     0.005     315     480 ..     223     378 ..     215     389 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-06
        DRIM 315 prlaplLakydssvlpavielLsapkakesVvefvldivenllkladeeeeeeedeeeigselLlphvsslLeylsalleksaaskkdkskellerele 413
                   +a+++ +  ++ l+++ e+Ls p +ke+V e++ +    ++++++  +e   d+e++ ++++  + +  Le +++++ +       + ++l+ r+ +
  KKY20928.1 223 HATAAYFGH--YKGLQTIHECLSDPEIKEAVREALSETSHLIVDKHEITDE---DQEKYVESIIRRISNPYLEDVPDRVGRA------PLRKLS-RKER 309
                 556667765..6889*****************************9998777...568999*******************988......556666.5558 PP

        DRIM 414 iLsrlaplvedseqassLldlllplLrkpsrrvsektk.velLkilenllrlyde...devdlpekllktl 480
                 ++   ++l+e  +++++Ll+ +   Lr ++  v+  ++  +l +il++   +  +   +  +  + l++++
  KKY20928.1 310 FIGPASQLAERGDKVDALLKGVEMALRFQK--VEGDDEsFKLAEILSSKSAEDATaelTGLETSHPLFDRV 378
                 888899999999999999999999999866..554444477777777766663333322224455555555 PP

>> Nucleolin_bd  Nucleolin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.7e-05     0.078       5      53 ..     240     288 ..     237     296 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.7e-05
  Nucleolin_bd   5 gsfsDkrLvqRveqyLesnedseyvDvdamaaeLqrqYr.eYgRrkrnaF 53 
                   +++sD+ +++ v++ L s+ +  +vD  ++++e q++Y     Rr  n++
    KKY20928.1 240 ECLSDPEIKEAVREAL-SETSHLIVDKHEITDEDQEKYVeSIIRRISNPY 288
                   5799************.66666****************944556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 2383.23
//
Query:       KKY20929.1  [L=1071]
Description: hypothetical protein UCRPC4_g03936 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-07   31.8   0.2    2.8e-06   27.7   0.2    2.5  1  JmjC      JmjC domain, hydroxylase
  ------ inclusion threshold ------
      0.041   13.6   0.0       0.12   12.1   0.0    1.7  1  Cupin_2   Cupin domain


Domain annotation for each model (and alignments):
>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.2   3.2e-10   2.8e-06       1     106 [.     208     322 ..     208     330 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 3.2e-10
                 EEEEE-TT-EEEEE--GGG-EE....EEEEEEE.........S-EEEEEE-GGGHHHHHHHHHHHHHCCSTTG.CCTTTCEE-HHHHHHTT---EEEEE CS
        JmjC   1 wlylgmpksttpwhiedqglyS....inylhfg.........apkvWyiipeekkeklekvlskknskeqpdl.lrhkstlispkqlekegipvyrfvq 85 
                 ++y+g ++++tp+h+e++g++     +  + +g         ++ +W+++++++++ + + +  + +  + ++  rh++++   k    + + vy ++q
  KKY20929.1 208 MCYIGHEGTYTPAHREMCGSLGqnimVDTSTGGiedgkptkpGSSIWFMTESKDRHLVAEYWLSRLG--HDIEvERHFAQINAWK---LAPFTVYVVEQ 301
                 58******************99665322222222222222227889*****************9963..3444255555444333...3689******* PP

                 -TT-EEEE-TT-EEEEEESSS CS
        JmjC  86 kpgefVfvfpgayHsvfnlgf 106
                 + g+++ ++p a+H+v+n g+
  KKY20929.1 302 RVGDLILIPPLAPHQVWNRGT 322
                 ******************997 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.3e-05      0.12      42      67 ..     302     327 ..     297     330 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.3e-05
                 ETTEEEEE-TT-EEEEEE-SSS-EEE CS
     Cupin_2  42 eaGdsvyfpagtpHrfrNtgdeparl 67 
                 + Gd++++p+  pH++ N+g+  ++ 
  KKY20929.1 302 RVGDLILIPPLAPHQVWNRGTRTMKA 327
                 68*******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1071 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       893  (0.0498076); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.49
# Mc/sec: 6609.71
//
Query:       KKY20930.1  [L=615]
Description: putative alpha-galactosidase d [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-34  117.8   2.0    1.6e-33  116.1   0.2    2.5  2  Melibiase_2  Alpha galactosidase A
    2.3e-13   50.0   0.3    5.3e-13   48.8   0.3    1.7  1  Melibiase_C  Alpha galactosidase C-terminal beta sandwich dom
  ------ inclusion threshold ------
      0.094   12.0   4.4       0.24   10.7   0.5    2.7  3  DUF1565      Protein of unknown function (DUF1565)


Domain annotation for each model (and alignments):
>> Melibiase_2  Alpha galactosidase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.2   2.7e-37   1.6e-33      27     284 .]      14     255 ..       1     255 [. 0.86
   2 ?   -2.9   0.1      0.48   2.9e+03     218     236 ..     578     596 ..     569     601 .. 0.82

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 2.7e-37
                  SHHHHHHHHHHHHHTTHHHHT--EEE--SS-B-SS--TTS---B-TTTSTTHHHHHHHHHHHTT-EEEEEEESSSB-TTSSB--TTTHHHHHHHHHHH CS
  Melibiase_2  27 seklfmeladvlaedgykdlgyeyviiddcwlakerdkegrlqadpkrfpsgikkladyvhskglklgiyadlgtktcagypgslkyleidaktfadw 124
                  +e+++++ a+ +++ g  d+gy+y++ d  w a++r ++g l+ +++ fpsg  +lad++h  gl +g+y+d g   c+   g + +    a  +   
   KKY20930.1  14 NETIIRSNAQAVVNLGLADAGYHYITPDCGWAAENRTTNGTLTWNATLFPSGYPALADWIHGLGLGFGVYSDSGIYMCQV-SGQIPQAGSLAAGYP-- 108
                  57889999********************99************************************************74.565554444333333.. PP

                  T--EEEEE-TSSSHHHHHHHHHHHHHHHHHTTS--EEE.E-HHHHH.TTTS---HHHHHHH-SEEE-SS---SSHHHHHHHHHHHHHTHHHHTTT-BT CS
  Melibiase_2 125 gvdllkldgcysnleelaegykelslalnktgrsivys.cewplyavvkkkkvdyteiaktcnlwrnyddiqdswdsvkeivdyfaenqdvlvevagp 221
                         d  y+  ++ ++ + ++++aln+tgr+i+++ cew + +  +      +   ++ n+wr  +di  +w++v   ++ f   +    + ag 
   KKY20930.1 109 -------DADYDPETSPSSRFATMETALNHTGREILFAiCEWGVDFP-S------AWAPSIGNTWRITNDIIREWTTVYRQINQFVPSS----SFAGH 188
                  .......5568888899999****************977***99872.1......23356789***************99998887765....57*** PP

                  TBEEE---B-TTSSSS-HHHHHHHHHHHHHTT--EEE-S-TTS....--HHHHHHHT-HHHHHHHT- CS
  Melibiase_2 222 gkwndpdmliignfglsldqqraqmalwailaapllmsndlrk....ispeakalllnkeviainqd 284
                  g+w d dml +gn  +++ ++++ ++lwai  +pl++ + l++    i++++ a+l n  vi  nqd
   KKY20930.1 189 GQWHDLDMLEVGNNIFTNAEEQTHFSLWAISKSPLIIGAALKDkyttINASSVAILRNTAVIGYNQD 255
                  *************************************9988743333999****************8 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.48
                  T-BTTBEEE---B-TTSSS CS
  Melibiase_2 218 vagpgkwndpdmliignfg 236
                  v g g  n  d ++ign g
   KKY20930.1 578 VPGFGAGNGSDQIVIGNVG 596
                  567788899********87 PP

>> Melibiase_C  Alpha galactosidase C-terminal beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.3   8.9e-17   5.3e-13       1      71 []     269     344 ..     269     344 .. 0.81

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 8.9e-17
                  ETTEEEEEEE-SSS-EEEEEEE...-E....EEEE-GTT--S-..EEEEETTTTEEE-..TT--EEEE-TT-EEEEEE CS
  Melibiase_C   1 egdlqvWakpLsdGdvaValfN...rt..tvtvdwsdlglpgsssysvrDlWtgkdlg..tgsssaevpphgvvllrl 71 
                  e++l+vWa+ Ls+G+++ a++N   +t  + ++++ d+g++++    v+D+W++k+ +  ++++  +vp+hg+ ll l
   KKY20930.1 269 EDGLDVWAGSLSGGRTVAAFVNwnnATihQAQLNFPDFGIQSA--TAVYDVWNDKNSSdiKTTYISDVPAHGTLLLEL 344
                  5899******************97422335677776*******..***********44424445788*******9976 PP

>> DUF1565  Protein of unknown function (DUF1565)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.58   3.5e+03     210     220 ..     199     209 ..     193     222 .. 0.83
   2 ?    2.1   0.1     0.017     1e+02      85     142 ..     278     341 ..     230     380 .. 0.70
   3 ?   10.7   0.5   4.1e-05      0.24      86     111 ..     424     457 ..     398     546 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.58
     DUF1565 210 aGnNifsnnae 220
                 +GnNif n +e
  KKY20930.1 199 VGNNIFTNAEE 209
                 89999998766 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.017
     DUF1565  85 dlsgvq.nvtivlaneatiaGvtitNp.....nilkgtgvliesasakianNtitgniadGiev 142
                 +lsg++  ++ v  n+ati   +++ p     + +  + v+  + s+ i+  +i+++ a+G   
  KKY20930.1 278 SLSGGRtVAAFVNWNNATIHQAQLNFPdfgiqSATAVYDVWNDKNSSDIKTTYISDVPAHGTLL 341
                 555444145677789999999999999765543367788999999**********999999433 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 4.1e-05
     DUF1565  86 lsgvqnvtivlaneatiaGvtitNp........n 111
                 ls   n+ti+++  +t+ G++itNp        +
  KKY20930.1 424 LSASANNTITIETPSTVSGIKITNPdstlypctS 457
                 345679*******************554444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.49
# Mc/sec: 3753.63
//
Query:       KKY20931.1  [L=517]
Description: putative serine threonine-protein kinase gad8 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-69  234.9   0.0    1.3e-69  234.5   0.0    1.1  1  Pkinase        Protein kinase domain
    2.8e-34  118.6   0.0    3.7e-34  118.2   0.0    1.1  1  Pkinase_Tyr    Protein tyrosine kinase
    1.6e-10   41.5   0.1    3.3e-10   40.5   0.1    1.6  1  Pkinase_C      Protein kinase C terminal domain
    6.5e-07   28.6   0.0    9.6e-07   28.1   0.0    1.2  1  Haspin_kinase  Haspin like kinase domain
     0.0036   16.7   0.0     0.0061   15.9   0.0    1.4  1  Kinase-like    Kinase-like
  ------ inclusion threshold ------
      0.051   13.2   0.0        2.1    7.9   0.0    2.3  2  FTA2           Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.5   0.0   4.4e-73   1.3e-69       1     264 []     175     432 ..     175     432 .. 0.93

  Alignments for each domain:
  == domain 1  score: 234.5 bits;  conditional E-value: 4.4e-73
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 +e l+ +G+GsfGkV+++++++tg+i+A+K+i+k ++ +++e  ++l+E ++l +++ p+iv l+ +f+++++lylvl +v+ggel+++l++++ ++ +
  KKY20931.1 175 FELLKVVGKGSFGKVMQVLKRDTGRIYALKTIRKAHIISRSEvAHTLAERSVLSQINNPFIVPLKFSFQSPEKLYLVLAFVNGGELFHHLQKEQRFDIN 273
                 577899*********************************9999******************************************************** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-S CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkpp 196
                 + +++++++l +le lH  ++i+rDlKpeNiL+d +g++ ++DFGl+k   ++++ +++f+gt+eYlAPE+l +++y+k+vD+W+lGv+lye+ltg pp
  KKY20931.1 274 RSRFYTAELLCALESLHGFKVIYRDLKPENILLDYTGHIALCDFGLCKLDMKDEDrTNTFCGTPEYLAPELLLGHGYTKTVDWWTLGVLLYEMLTGLPP 372
                 ************************************************75555555******************************************* PP

                 TTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT...HHHHHTSGGG CS
     Pkinase 197 fsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt...aeellqhpyl 264
                 f++e+++e ++k+l++            +++p ++ +++ akdll+kll+++p++Rl+    +e+++h+++
  KKY20931.1 373 FYDENTNEMYRKILQE-----------PLHFPGPEIVPPAAKDLLTKLLDRNPERRLGangSAEIKAHHFF 432
                 **77777755555555...........689***************************95555688888876 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   0.0   1.2e-37   3.7e-34       2     250 ..     176     418 ..     175     422 .. 0.91

  Alignments for each domain:
  == domain 1  score: 118.2 bits;  conditional E-value: 1.2e-37
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTS..SHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeea..teeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  el k +G+G+fGkV++   +    ++    a+Kt+++ +  +++e ++ l e ++++++++p iv l     + e+l++v+ +v+gG+L ++L+k+  
   KKY20931.1 176 ELLKVVGKGSFGKVMQVLKR----DTGRIYALKTIRKAHiiSRSEVAHTLAERSVLSQINNPFIVPLKFSFQSPEKLYLVLAFVNGGELFHHLQKE-- 267
                  67899**********99888....888899*****765422677789999*********************************************8.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvll 195
                  +++++++   +++++ +++e L+  k++ rdl   N+Ll+ + ++ ++DfGL++  +kd++ +  ++     +++apE l  + +t+  D W  Gvll
   KKY20931.1 268 QRFDINRSRFYTAELLCALESLHGFKVIYRDLKPENILLDYTGHIALCDFGLCKLDMKDEDRT--NTFCGTPEYLAPELLLGHGYTKTVDWWTLGVLL 363
                  9999999999********************************************885555443..34455679************************* PP

                  HHHHTTSSGTTTTSHHHHHHHHH.HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS- CS
  Pkinase_Tyr 196 wEiftlgespypglkneevlekl.kegkrlekpekcpeelyelmkkcweedpeeRp 250
                  +E++t g  p+ + +++e+++k+ +e  + + pe +p++ ++l++k ++++pe+R 
   KKY20931.1 364 YEMLT-GLPPFYDENTNEMYRKIlQEPLHFPGPEIVPPAAKDLLTKLLDRNPERRL 418
                  *****.****9999999999888799999************************995 PP

>> Pkinase_C  Protein kinase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.1   1.1e-13   3.3e-10       4      46 .]     456     494 ..     453     494 .. 0.96

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 1.1e-13
   Pkinase_C   4 deDtsNFDpeFTeedprdtppddmpagspltssvqenFrGFtY 46 
                 ++Dt+NFD eFT+e p+d++++    g +l++ +q++F G++Y
  KKY20931.1 456 ALDTANFDREFTSEAPQDSYVE----GPMLSQTMQQQFAGWSY 494
                 78********************....89**************9 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   3.2e-10   9.6e-07     171     260 ..     235     326 ..     185     337 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 3.2e-10
  Haspin_kinase 171 vlkekpdfyseqqlflvlllkdkGtdLeevklkswkqalsifwqivkiLyvaEtkfeFE..HRdLhldniLvdknlnvtlidlklsRle.sse 260
                    ++  k  f+s ++l+lvl + ++G+   +++ ++  ++++  + +++ L + E+   F    RdL+ +niL+d ++++ l+d+ l++l  + +
     KKY20931.1 235 IVPLKFSFQSPEKLYLVLAFVNGGELFHHLQKEQRFDINRSRFYTAELLCALESLHGFKviYRDLKPENILLDYTGHIALCDFGLCKLDmK-D 326
                    333347889999******************999999999999999********976665449*************************9952.3 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     2e-06    0.0061     148     288 .]     277     417 ..     248     417 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2e-06
  Kinase-like 148 llTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwc 245
                    T++l+    +L+   ++  +++++n+lld  g + l +f+ L +   k     ++     pE l+            +t  +d W+lG+  y +  
   KKY20931.1 277 FYTAELLCALESLHGFKVIYRDLKPENILLDYTGHIALCDFG-LCKLDMKDE-DRTNTFCGTPEYLAPELL----LGHGYTKTVDWWTLGVLLYEMLT 368
                  345666667799*****************************8.444444444.233333334555555444....23367889*************99 PP

  Kinase-like 246 lklPl.tlateeakeew.....kfklckkipekvkaLlkkfLqlsqedR 288
                     P+ ++ t+e+  +      +f   + +p + k Ll k+L ++ e+R
   KKY20931.1 369 GLPPFyDENTNEMYRKIlqeplHFPGPEIVPPAAKDLLTKLLDRNPERR 417
                  9888746667777666555555666666677777899999999988887 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0007       2.1      22      58 ..     173     211 ..     166     236 .. 0.74
   2 ?    2.8   0.0     0.026        77     177     204 ..     278     305 ..     261     320 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0007
        FTA2  22 kdiefleyLgkglhsiVlkvkirgk..eYALKlFrflea 58 
                 +d+e+l+++gkg  + V++v  r+   +YALK  r+ + 
  KKY20931.1 173 EDFELLKVVGKGSFGKVMQVLKRDTgrIYALKTIRKAHI 211
                 699****************97764334*****8887744 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.026
        FTA2 177 qlpkllrdlkklhklgIvvrDlkeenyi 204
                 ++ +ll  l++lh   ++ rDlk+en++
  KKY20931.1 278 YTAELLCALESLHGFKVIYRDLKPENIL 305
                 5788999******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.48
# Mc/sec: 3232.67
//
Query:       KKY20932.1  [L=640]
Description: putative saga complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-10   38.8   6.7    1.2e-09   37.8   3.6    2.3  2  ZZ               Zinc finger, ZZ type
    6.1e-10   39.1   0.0    2.3e-09   37.3   0.0    2.1  1  Myb_DNA-binding  Myb-like DNA-binding domain
    2.2e-08   34.3   0.0    6.1e-08   32.9   0.0    1.7  1  SWIRM            SWIRM domain
  ------ inclusion threshold ------
       0.12   12.6   0.2       0.43   10.8   0.1    2.0  2  PG_binding_1     Putative peptidoglycan binding domain


Domain annotation for each model (and alignments):
>> ZZ  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   3.6   2.6e-13   1.2e-09       3      44 ..     117     161 ..     116     162 .. 0.92
   2 ?    1.4   0.1     0.064   2.9e+02      23      36 ..     572     585 ..     570     590 .. 0.77

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 2.6e-13
                 S-EE-TTT-S..EESSEEEES..SSSS-EE-HHHHHH..H---SS CS
          ZZ   3 kkytCdgCseapligvRyhcl..rcsdYDLCqsCfst.hkagkhk 44 
                  ky+Cd+Cs + +  vR +c+   c++YDLC++Cf +   +++h 
  KKY20932.1 117 TKYHCDVCSVDVTSTVRISCAdpACPEYDLCVPCFGKgEATKNHD 161
                 58******************9555*************99999996 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.064
                 SSSSS-EE-HHHHH CS
          ZZ  23 lrcsdYDLCqsCfs 36 
                 l+++++ LC  C  
  KKY20932.1 572 LSAEETQLCNVCHL 585
                 57889999999976 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   5.1e-13   2.3e-09       3      43 ..     181     223 ..     179     225 .. 0.94

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 5.1e-13
                      SSBHHHHHHHHHHHHHHT.TCHHHHHHHHT.SS-HHHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhG.nrWkkIaerlg.gRtekqcrsrwr 43 
                      +W ++E++lLle+ + +G ++W+ Ia+++g  Rt+ ++r+++ 
       KKY20932.1 181 EWGADEELLLLEGAEIYGlGSWADIADHIGgYRTKDEVRDHYI 223
                      7*****************************66*********95 PP

>> SWIRM  SWIRM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   1.4e-11   6.1e-08       7      87 ..     568     637 ..     564     639 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 1.4e-11
       SWIRM   7 dpdslhpiEkellselfngkdktpeeYlkiRnkiialyrenpkeyltvteaqkalkrrrltgidvnllsrihefLerwGlI 87 
                 d + l+ +E +l+         +p+ Yl +++ +i++  ++   +l++++++ ++k      idvn+++r+h+f+ + G+I
  KKY20932.1 568 DLQLLSAEETQLCNVCH----LRPKAYLVLKEALIKEAMKQG-GNLRRKDVRAMCK------IDVNKANRLHDFMVHSGWI 637
                 56788999999998887....9******************85.55******88888......9*****************9 PP

>> PG_binding_1  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   9.5e-05      0.43      16      54 ..     293     335 ..     290     338 .. 0.80
   2 ?   -2.6   0.0       1.5   6.9e+03      21      39 ..     403     421 ..     397     426 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.5e-05
                   T--.S..SSSSB--HHHHHHHHHHH..HHTTST-SSSBSHHHH CS
  PG_binding_1  16 Gylsg..padgtfgpateeaVkefQ..qffgLpvtGildpaTl 54 
                   Gy +g  +  + f ++ eeaV+ +Q     gL + G++d++T 
    KKY20932.1 293 GYMPGrlEFETEFANEAEEAVQHMQfePGDGLDANGQMDEETA 335
                   677554477899*************444579**********96 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.5
                   SSSSB--HHHHHHHHHHHH CS
  PG_binding_1  21 padgtfgpateeaVkefQq 39 
                   ++d  +   ++ a+ + Q+
    KKY20932.1 403 TKDLLYEHNLRLAISQLQE 421
                   6778888899999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.48
# Mc/sec: 4035.01
//
Query:       KKY20933.1  [L=364]
Description: putative mannose-1-phosphate guanylyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-51  174.5   0.0      6e-51  173.4   0.0    1.5  2  NTP_transferase  Nucleotidyl transferase
    6.1e-15   54.3  10.5    1.2e-10   40.7   3.9    4.0  3  Hexapep          Bacterial transferase hexapeptide (six repea
    6.5e-10   39.6   0.0    8.2e-10   39.3   0.0    1.3  1  NTP_transf_3     MobA-like NTP transferase domain
    2.2e-07   30.5   6.3    1.5e-06   27.8   1.5    3.2  3  Hexapep_2        Hexapeptide repeat of succinyl-transferase
     0.0037   15.5   0.1     0.0077   14.4   0.1    1.4  1  DUF4954          Domain of unknown function (DUF4954)
  ------ inclusion threshold ------
      0.041   13.6   0.0      0.067   12.9   0.0    1.3  1  IspD             2-C-methyl-D-erythritol 4-phosphate cytidyly


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.4   0.0     2e-54     6e-51       1     242 [.       2     230 ..       2     236 .. 0.94
   2 ?   -2.5   0.0         1     3e+03     100     117 ..     321     338 ..     311     342 .. 0.78

  Alignments for each domain:
  == domain 1  score: 173.4 bits;  conditional E-value: 2e-54
                      EEEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGTSEEEEEEESS--BGGHHHHHTH CS
  NTP_transferase   1 kavILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfgvevlialepegkgtAdAvalaa 94 
                      ka+IL+GG GtRL+PLt tl+k+lv +++  ++i +++++la++g+++i++ ++++   + +   + ++ ++v++++++e+e+ gtA++++la+
       KKY20933.1   2 KALILVGGFGTRLRPLTLTLPKPLVEFGNR-PMILHQVEALAAAGVTDIVLAVNYRPDVMTKALKQYEEIYNVRIEFSVETEPLGTAGPLKLAE 94 
                      799***************************.***************************99999999999999********************** PP

                      HHHTTSSE..EEEEETTEEEESTTHHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEEC..TTSBEEEEECS-SSHSHCSEECCSEEEEETTH CS
  NTP_transferase  95 elledeksdelvlvLggDhlikdayeeavkkaiekaakgtvtfgivpveeateyGviead..eegrverfvEKPkeakaselassGiYvfnsev 186
                      ++l++++s   ++vL++D+++++ ++e+ +++++++   + t+++++vee+++yGv+ ++  ++ ++ rfvEKP e    + +++GiY+ n++v
       KKY20933.1  95 KILGKDDS--PFFVLNSDVICDYPFQELADFHKAHGD--EGTIVVTKVEEPSKYGVVVHKpgHTSKIDRFVEKPVEFV-GNRINAGIYILNPSV 183
                      ******98..9**************************..99****************99965667*************.9************** PP

                      HHHHHHCCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE-EEEXSSHHHHHHHH CS
  NTP_transferase 187 llflakdleelkrgedeitdilpkaleegkvalaflfkdaeyWsDvGtldsllean 242
                      l+ +     el r ++  ++++p+++++g  + +f+ ++   W+DvG+++++l  +
       KKY20933.1 184 LKRI-----EL-RPTSIEQETFPAIVKDGLLH-SFDLEG--FWMDVGQPKDFLSGT 230
                      ****.....44.5667778999******9887.79****..6**********9765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1
                      SSE..EEEEETTEEEEST CS
  NTP_transferase 100 eksdelvlvLggDhlikd 117
                      +++ e+v vLg+D+ i d
       KKY20933.1 321 WARLENVTVLGDDVTIAD 338
                      55568899*****99987 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   3.9     4e-14   1.2e-10       1      34 [.     263     296 ..     263     298 .. 0.93
   2 !    5.9   0.0    0.0037        11      19      35 ..     309     325 ..     293     326 .. 0.80
   3 !   10.6   0.1   0.00012      0.36      11      35 ..     325     349 ..     322     350 .. 0.85

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 4e-14
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEE CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvi 34 
                 s++IG+n+ Igp+++ig+nV+IGd+v+I + v +
  KKY20933.1 263 SAKIGKNCRIGPNVTIGPNVVIGDGVRIQRSVIL 296
                 689**************************98876 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0037
                 TEEE-TTEEEETTEEEE CS
     Hexapep  19 nVkIGdnvkIgagvvig 35 
                  +++G n+++g+++++ 
  KKY20933.1 309 STIVGWNSTVGRWARLE 325
                 6899*******999875 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00012
                 -TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep  11 gpfaviggnVkIGdnvkIgagvvig 35 
                  + +v+g++V+I d v++  g+v+ 
  KKY20933.1 325 ENVTVLGDDVTIADEVYVNGGSVLP 349
                 577899************9999985 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   2.7e-13   8.2e-10       1     123 [.       3     136 ..       3     231 .. 0.75

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 2.7e-13
                   EEEEEESS-TTTTT.....THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSH..CHHHHHHTTC......TS-EEE-TTS..S-SHHHHHHHHHHH CS
  NTP_transf_3   1 aviLAGGrSsRmgg.....dKallplggkpllervldalraagvdevvvvggd..eevlaalarl......gvrvvededp..gkgplaslaaalra 82 
                   a+iL GG ++R+       +K+l+++g++p++ ++++al+aagv ++v+++++  +  ++al+++      ++++ ++++p   +gpl+     l +
    KKY20933.1   3 ALILVGGFGTRLRPltltlPKPLVEFGNRPMILHQVEALAAAGVTDIVLAVNYrpDVMTKALKQYeeiynvRIEFSVETEPlgTAGPLKLAEKILGK 99 
                   79**********8444668********************************9953334556666644443334444444332235555555555543 PP

                   H.SSSCEEEEETT-TT--HHHHHHHHHCHHHHTSSEEEEES CS
  NTP_transf_3  83 aadadavlvlacDmPlltpelverllaaaaasgadvvvpty 123
                     d+++++vl  D+++      ++l++ ++a+g++ +++++
    KKY20933.1 100 --DDSPFFVLNSDVIC--DYPFQELADFHKAHGDEGTIVVT 136
                   ..78889999888876..34456666666555554444433 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.2   6.5e+03      26      32 ..     172     178 ..     171     179 .. 0.81
   2 !   27.8   1.5   5.1e-10   1.5e-06       3      27 ..     265     291 ..     263     297 .. 0.92
   3 ?    3.8   0.0     0.016        47       9      31 ..     311     341 ..     308     348 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.2
                 E-TT-EE CS
   Hexapep_2  26 vgaGvvi 32 
                 + aG++i
  KKY20933.1 172 INAGIYI 178
                 6799998 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 5.1e-10
                 EE-TT-EE-TT-EES..EEE-TT-EE- CS
   Hexapep_2   3 iIGdnCliGanagiG..vslGdncvvg 27 
                 +IG+nC iG+n +iG  v +Gd++ ++
  KKY20933.1 265 KIGKNCRIGPNVTIGpnVVIGDGVRIQ 291
                 8*************999*******986 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.016
                 EE-TT-EES........EEE-TT-EE-TT-E CS
   Hexapep_2   9 liGanagiG........vslGdncvvgaGvv 31 
                 ++G n+++G        + lGd+++++  v+
  KKY20933.1 311 IVGWNSTVGrwarlenvTVLGDDVTIADEVY 341
                 5666777766666666778888888875444 PP

>> DUF4954  Domain of unknown function (DUF4954)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   2.6e-06    0.0077     190     263 ..     257     327 ..     255     340 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.6e-06
     DUF4954 190 Nvkigdyatiegaskl.engtinSskeapveiGegViledfiissGskikdgavisrcfvGqavklkkqfsaeds 263
                 Nv +++ a+i    ++  n ti       v iG+gV ++ ++i + sk+kd a i+ ++vG + ++++ +++e+ 
  KKY20933.1 257 NVLVDPSAKIGKNCRIgPNVTIGP----NVVIGDGVRIQRSVILENSKVKDHAWIKSTIVGWNSTVGRWARLENV 327
                 666666666654444424666654....489*************************************9999985 PP

>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.2e-05     0.067       2      55 ..       2      57 ..       1      74 [. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.2e-05
                EEEEECTTSSCTT-...SSS-GGGSEETTEEHHHHHHHHHHCTTTEEEEEEEE-GGG CS
        IspD  2 vvvipAAGsGkRmk...aglpKqflelkgqtllehtvdallaskavdkivvvvsedd 55
                 ++i   G+G+R++     lpK ++e  +++++ h v+al+a   v  iv++v+   
  KKY20933.1  2 KALILVGGFGTRLRpltLTLPKPLVEFGNRPMILHQVEALAA-AGVTDIVLAVNYRP 57
                5788899*****86222689********************99.66778888887554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.50
# Mc/sec: 2172.86
//
Query:       KKY20934.1  [L=364]
Description: hypothetical protein UCRPC4_g03941 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2371.78
//
Query:       KKY20935.1  [L=302]
Description: putative enoyl hydratase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-45  155.6   0.0      4e-40  137.7   0.0    2.1  2  ECH_1     Enoyl-CoA hydratase/isomerase
    5.8e-26   91.8   0.0    6.6e-25   88.3   0.0    2.0  2  ECH_2     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   0.0   4.5e-44     4e-40       6     176 ..      24     199 ..      21     207 .. 0.90
   2 !   15.8   0.0   7.4e-07    0.0066     170     250 ..     217     299 ..     216     300 .. 0.89

  Alignments for each domain:
  == domain 1  score: 137.7 bits;  conditional E-value: 4.5e-44
                 EEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEEEEB-HHHHHHHHC......HHHHHHHCCHHHHHHHHHHSSSEEEEEE-SE CS
       ECH_1   6 vaviklnrPeavNalsaelltEliqalekleddksvravvLtGgdkaFaaGadlkemaeeek......akqallkeevlelwtklytvpkpviaavnGa 98 
                 ++vi lnrP+ +Na+  +   El + le  + ++s+r +++tG+++aF+aG+dlke   ++       +   ++  + ++  ++ +t +kp+i avnG 
  KKY20935.1  24 ILVIILNRPTSLNAIGTAGHWELHNTLEWYDSQPSLRCAIITGRGRAFCAGQDLKEWNTRNAestnpdRSSGIFPPSGFAGVSR-RTGKKPIILAVNGI 121
                 899*****************************************************9988765442233334444555555554.789*********** PP

                 EETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESG CS
       ECH_1  99 aigGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpe 176
                 a+gGG+e++  +Di++a+  a+f+l+e+k G+++ ag+ ++l+r vG+++A+ + l+g+ ++a ea+++G+v+++v +
  KKY20935.1 122 AFGGGMEMVANADIAVAGSRARFSLPEVKRGVVAIAGALPRLVRSVGRARAMDLSLTGRVLTALEAERWGIVSQIVDD 199
                 ***************************************************************************976 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 7.4e-07
                 SSEEESGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHCTSHHHHHHHHHHHTCSH----- CS
       ECH_1 170 vdkvvpeeqlleealelaeklaekspaalrqlkealnakle..dalaeqleaeaklfestfskddikeGlqaflEkrkpefed 250
                 ++k+v + +l ++ale+a+++a +sp+++   k+ +    e   a++  + +  +   ++ + ++ +eG+ af+Ekr p+++d
  KKY20935.1 217 IEKIVLKRKLTQKALEIANEVAGNSPDSIIITKAGIGMGWEgiGAEEGSRLLVEQWGRKLNEGENLREGVRAFVEKRVPRWRD 299
                 67899999********************************98556666666777788888999999***************87 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.0   7.4e-29   6.6e-25       2     198 ..      25     220 ..      24     246 .. 0.86
   2 ?    2.2   0.0     0.012     1e+02     293     321 ..     275     301 ..     213     302 .] 0.63

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 7.4e-29
                 EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THH..HHHHHHHHHHHHHHHC-SS-EEEEE-BEE CS
       ECH_2   2 gvitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkee..eeffreeYklnyliatypkpvvalmdGiv 98 
                  vi+Lnrp +lNa+ ++   +l+++l+ ++++++ ++ +++g g +afCAG D+++  + + e+++ +  + +f           t +kp++  ++Gi+
  KKY20935.1  25 LVIILNRPTSLNAIGTAGHWELHNTLEWYDSQPSLRCAIITGRG-RAFCAGQDLKEWNTRNAESTNPDrsSGIFPPSGFAGVSRRTGKKPIILAVNGIA 122
                 589***************************************88.************99998885553357788877777888899************* PP

                 ETHHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHHTT........- CS
       ECH_2  99 mGgGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgadalaaglathyvpseklealeeaLaelessdeeave 196
                  GgG+ + +++ + v+  r++f+ PE++ G++   G+   L r  g + ++ l lTG+ l++ +a   g+ +++v++++ ++  + +a ++++   ++e
  KKY20935.1 123 FGGGMEMVANADIAVAGSRARFSLPEVKRGVVAIAGALPRLVRSVGrARAMDLSLTGRVLTALEAERWGIVSQIVDDHDENEKDDPVAITDHK---DIE 218
                 ************************************9999999866366999************************99988887777776444...444 PP

                 -- CS
       ECH_2 197 ev 198
                 ++
  KKY20935.1 219 KI 220
                 43 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.012
                 HHHHHSSHHHHHHHHTTS-------SSSS CS
       ECH_2 293 rllaekDfveGvrallvdkdkkPkWkpat 321
                 +l + +++ eGvra  v+k + P+W+ ++
  KKY20935.1 275 KLNEGENLREGVRAF-VEK-RVPRWRDSK 301
                 34445999*****97.676.79***9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.36s 00:00:00.97 Elapsed: 00:00:00.56
# Mc/sec: 1614.18
//
Query:       KKY20936.1  [L=254]
Description: putative phosphopantothenoylcysteine decarboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-41  141.9   0.0    2.5e-41  141.1   0.0    1.4  1  Flavoprotein  Flavoprotein


Domain annotation for each model (and alignments):
>> Flavoprotein  Flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.1   0.0   1.4e-45   2.5e-41       2     156 ..      42     248 ..      41     250 .. 0.89

  Alignments for each domain:
  == domain 1  score: 141.1 bits;  conditional E-value: 1.4e-45
                   EEEEEE-SSCGGGCHHHHHHHHHH...TTEEEEEEESCHHHHCCHHGGS............................TCSSHHHHHHCTTESEEEEE CS
  Flavoprotein   2 killgiTGsvaaikalellekLkk...egievqvvltkaAkkfiskeklklaa........................redpilhielrrwadllvia 71 
                   +ill++TGsva+ik++ +++ L++   + ++v++v+t++A++f+  +  + ++                        r+d ilhielrrwad++v++
    KKY20936.1  42 HILLAATGSVATIKLPLIVRGLIQnnrDAVSVRIVITPSARQFLMGQ--SEEQpllteipdvdgiyndadewvkpwvRGDAILHIELRRWADVMVVV 136
                   9***********************9989*****************77..2223578899************************************** PP

                   EEEHHHHHHHHTT--SSHH................HHHHHT.....HCCTTEEEEE.--HHCCTCSTCHHHHHHH....H.T............... CS
  Flavoprotein  72 PasantlakianGiadnll................tlilra.....takkpiliaPamnpamyenpqtlknlekl....e.egvtvikPse.....g 137
                   P san+lak++nGi+d l+                +          +++k +++a amn+am+++p+t k++++l    e  + ++++P++     g
    KKY20936.1 137 PMSANSLAKMVNGISDGLVlsvlrawdtegqidgpI----KlsngsQKRKTVFVAAAMNTAMWRHPVTRKQMATLkewqEdGWLKILQPQQkylacG 229
                   *******************66666666666665551....04455589999************************988756789******88***** PP

                   ......GHHHHHHHHHHCH CS
  Flavoprotein 138 digkgkmaeieeivgkild 156
                   d+g g+m +  eiv +il 
    KKY20936.1 230 DVGDGAMMDSREIVAEILA 248
                   ***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.53
# Mc/sec: 1454.70
//
Query:       KKY20937.1  [L=384]
Description: putative 4-hydroxybenzoate polyprenyl transferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-42  145.2  17.2    2.8e-42  144.8  17.2    1.1  1  UbiA      UbiA prenyltransferase family


Domain annotation for each model (and alignments):
>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.8  17.2   1.5e-46   2.8e-42       2     246 ..      97     347 ..      92     354 .. 0.86

  Alignments for each domain:
  == domain 1  score: 144.8 bits;  conditional E-value: 1.5e-46
        UbiA   2 lipalvglalaaggspdl.......llllllllgtllaaaaanalNdyfDreiDadmertpnRPlvsGrispkealifaivllilgllllalllnplta 93 
                 l+++l+++ la++            ++ +l++ g+l +++a++a+Nd++Dr+ D ++ert+ RP+++ +i+p++a++f  +  ++gl++l l++  +++
  KKY20937.1  97 LFSTLLAAPLATP----VssptevlWMSALFFSGALIMRGAGCAVNDLWDRNLDPKVERTRLRPIARKAITPQNAFVFTGFVHLAGLGVL-LQFPVQCL 190
                 3444444444433....3344577788888888888******************************************************.******** PP

        UbiA  94 llgllalllyvvYtglrlKrrtllgtvvggiafglppllgwaavtgsl......sllalllalavflltwaialandlrdregDrkagiktlpvvlGrk 186
                 + g+ +lll+  Y+    Kr+t ++++v+g++f +++l+g+ a + +l       ++ ++l++ + ++t+ +++++++ d+++D +agik++++++  +
  KKY20937.1 191 FYGIPSLLLVGTYP--LAKRITNYPQFVLGLTFSWGALMGFPALGIDLlenidaLAAGAALYASCVAWTVNYDMIYAHMDIKDDVNAGIKSIALRHEHN 287
                 **************..**********************************999977778888889*******************************655 PP

        UbiA 187 aaril..lalllavlllallllllalllllylllalllaalallraarlvrrrdakkaakff 246
                 + ++l  l++l ++ll++  + ++ + ++ +++ + + aa  l   +++vr ++ ++++ +f
  KKY20937.1 288 TKAVLagLTALQVGLLAI--AGFASGAGPAFFIGSCGGAATTLSTMIWRVRLKNVRDCWWWF 347
                 555555666666666655..7777777777777788899999999*************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 2356.24
//
Query:       KKY20938.1  [L=354]
Description: putative vacuolar protein sorting-associated protein 62 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-13   49.7   0.5    3.3e-13   48.8   0.5    1.4  1  Vps62     Vacuolar protein sorting-associated protein 62


Domain annotation for each model (and alignments):
>> Vps62  Vacuolar protein sorting-associated protein 62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.5   1.8e-17   3.3e-13     240     487 ..      26     284 ..      10     302 .. 0.76

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 1.8e-17
       Vps62 240 kalikaygptvyfhpdeeylpssvsWffknGallykkgee....kgeeida.eGsnlPqggs..nDgeyWldlpvdekarekvkkGdlesaklyvhvkp 331
                  + +k y+p++++  de+++p+ ++ f++      ++ ++    +++++d+ +  nl +g      ++   +lp+    ++   +G++++a+    v  
  KKY20938.1  26 PSYVKDYAPVLWLARDETFFPADLAQFLDHVTPTTENRSHpelaRPVTLDSlDDLNLSNGTIflSANSTITELPTWFYGQRPEFTGEVQNATSCAVVVV 124
                 567899**********************99887766655444445555654356899999853367778899**98888888889************** PP

       Vps62 332 alGgtftDiavWvfyPfnGpaklkvgllnlplgkiGehvgdWehvtlrisnfsgeLlsvyfsqhsgGewvdasdlefieggnkavvyssknghasypkp 430
                   G+ + D   + fy +n   ++   + +l lg  G+h++dWeh+ +r  n  g  ++v++sqh  G+  + + +e  e g ++v+y  +  ha +p+p
  KKY20938.1 125 DKGSGIEDAFYFYFYAYNEGNHVD-PFGDLDLGGFGDHLADWEHTMVRFHN--GVPYAVWLSQHGFGQAFHYKTMEK-E-GLRPVAYVGRGTHANWPTP 218
                 ******************887765.4669*******************876..999******************996.5.49***************** PP

       Vps62 431 glvlqG............saklgiGirndaarsklvvDssakyeivaaeylesavaeP.aWlqymreWGP 487
                 g                 +++ + G+r d  rs  +     +y++ + e+   +   P +Wl ++ +WG 
  KKY20938.1 219 GNHDHFrhgygvrtpillTDHASRGVRYDPLRSAWF----YNYDVETREFSAYDTDTPvNWLSFTGHWGD 284
                 *86433000111111111233445555555555554....466666777776666666369999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2459.45
//
Query:       KKY20939.1  [L=324]
Description: putative aldo-keto reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-53  180.1   0.0    1.4e-51  175.4   0.0    2.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.4   0.0   7.9e-56   1.4e-51       2     292 ..      18     283 ..      17     285 .. 0.94

  Alignments for each domain:
  == domain 1  score: 175.4 bits;  conditional E-value: 7.9e-56
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLg 98 
                   +glGtwq +      + e+ +++ +al+ G++++D A+ Y   ++e+++G  +kks+++re++++++K+      ++ ++++ +++e+++++lk ++
    KKY20939.1  18 VGLGTWQSK------PHEVEDAVAAALKIGYRHIDGAQGY---ENENEVGAGIKKSGVPREDIFLTSKL------WNTHHEPHRVEEAVDNTLKDFQ 99 
                   799999555......78***********************...**************************......********************** PP

                   -S-EEEEEE-S--TTS-.....................HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTH CS
  Aldo_ket_red  99 tdyvDllllHrpdpslp....................sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegl 175
                   tdy+Dl+l+H+p    +                     i ++++ale lv +Gkir+iGvSnf+ +++e ++k++k+k++++q+e +++  l++++l
    KKY20939.1 100 TDYLDLYLIHWPIAFRYttgagppidpktgridvvdvPIKDTWAALEALVAKGKIRSIGVSNFTKDKIEDLLKTAKIKPAVNQIEAHPY--LQQREL 194
                   ***********97666667**********************************************************************..****** PP

                   HHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHH CS
  Aldo_ket_red 176 lelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqled 272
                   l+ +k++gv +  ysplg+  +      ++++                     ++ + e ak+ g+++aql +++a+  ++++ v+p++ ++e+++ 
    KKY20939.1 195 LKWAKEQGVVITGYSPLGNNVYG-----YPRV-------------------VDDPLVIETAKSLGKTPAQLLISWAI--QRGTAVLPKSVTPERIQS 265
                   ******************77766.....4444...................45788999******************..9***************** PP

                   HHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 273 nldalelklseeevaeldel 292
                   n++ +  +l+e++++++  l
    KKY20939.1 266 NFEDF--ELPEDTFQAISGL 283
                   ***99..*******999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.51
# Mc/sec: 1921.60
//
Query:       KKY20940.1  [L=600]
Description: putative major facilitator superfamily [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-19   70.2   5.6    2.9e-16   59.4   2.2    2.5  2  Ribosomal_L3  Ribosomal protein L3
    2.8e-14   53.5   0.0    6.9e-14   52.3   0.0    1.6  2  Cyclase       Putative cyclase


Domain annotation for each model (and alignments):
>> Ribosomal_L3  Ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   2.2   3.3e-20   2.9e-16     208     290 ..     467     553 ..     462     557 .. 0.91
   2 !   11.8   0.1   9.8e-06     0.088     323     346 ..     556     579 ..     552     594 .. 0.90

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 3.3e-20
                   CCCCS-TTSEEEEEEEE---EEE-HHHHCT----STTTSSS..SSS-S-SS-SS..SSS--TTS--SEEESCCEEEEEEEEEEEEET CS
  Ribosomal_L3 208 vaavFrqgeliDvigvtkGkGfeGvvkRWgvkklprkthrg..lRkvaaigawd..parVsstvaraGqkGyhhRtelnkkiyrigk 290
                    a++F  g+++D  +  kGkGf+Gv+kRWg++++ r ++ +  +R +++ g ++   +rV ++ ++aG++G+ + t  n+ki ++++
    KKY20940.1 467 KADHFLVGQYVDTRSNSKGKGFQGVMKRWGMHGQDRSHGASlsHRSMGSAGQGQggGSRVYPGKKMAGNMGNERNTVQNLKILQVDA 553
                   579************************************9999****99987762268*************************9986 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 9.8e-06
                   CEEEEES--SSSTTEEEEEEE-SS CS
  Ribosomal_L3 323 dfilvkGsvpGpkkrlvklrksll 346
                    +++v+G+v Gpkk+lv+++++l 
    KKY20940.1 556 GILVVNGAVSGPKKCLVRVQDALK 579
                   5899****************9985 PP

>> Cyclase  Putative cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   7.7e-18   6.9e-14      17     135 ..      72     248 ..      40     249 .. 0.75
   2 ?   -3.2   0.0         1   9.3e+03      75      96 ..     338     358 ..     318     410 .. 0.56

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 7.7e-18
     Cyclase  17 p.................islsehtGTHlDapgHfae....kti...................delpleelvgpavvldvsak.......aaa.edyei 67 
                 p                 + +++++++++D + H+ +    k +                          +vg++v+ld ++        +aa e+ + 
  KKY20940.1  72 PfkqeifqkgqftvnddvLCFNTQCSSQWDVFRHYGNqkykK-FymghkieefkdsdvigthvV-ANNGGIVGRGVLLDYKDWadskgikVAAlESKD- 167
                 24444555556666667799***************8854431.144444455554444444321.45578**********665555666433444444. PP

     Cyclase  68 itaedleaalakqgveikpgdivlirTgwskrl.............edkekyrnpglseeaaewlaekgvkavGvDtlsvD 135
                 it ++l+  +++++++ ++gdi+++r+g++  +             +++++y +    ee+++w+++++++av+ D++s++
  KKY20940.1 168 ITLANLKSIIKEHDIQFQKGDILFVRSGFTTAYhqldpdaqeklaqRETPDYLGIQACEEVVRWIWDQQFAAVAGDAPSFE 248
                 6*****************************999****999999987667899888899*********************98 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1
     Cyclase  75 aalakqgveikpgdivlirTgw 96 
                 a ++k+gv+ ++ ++v+  T  
  KKY20940.1 338 ADEEKYGVT-PEDEFVVYGTPG 358
                 345556644.555666666633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 3884.57
//
Query:       KKY20941.1  [L=908]
Description: putative beta-glucosidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-46  157.1   0.0    1.2e-45  156.0   0.0    1.6  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
    1.3e-41  143.0   0.0    2.1e-41  142.4   0.0    1.3  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    1.8e-19   69.6   0.0    3.2e-19   68.8   0.0    1.4  1  Fn3-like         Fibronectin type III-like domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.0   0.0     2e-49   1.2e-45       1     204 []     430     681 ..     430     681 .. 0.84

  Alignments for each domain:
  == domain 1  score: 156.0 bits;  conditional E-value: 2e-49
                      -EEEEEGSS--S-..S-STEEEEEESGGGS...............SS-SS-BSSS----S---HHHHHHHHHHH......-HHHHHHHHHHHTS CS
                      xxxxxxxxxxxxx..xxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C   1 iVLLkNennlLPL..kkklkkiaviGpnad...............etlklGggsgtvtvsylvsplegirerles....eegideaveaakeaD 73 
                      ++LLkNe+++LPL  + ++++++v+G +a+               +tl +G+gsgt++++yl +p+++ir+ +++    ++++       + +D
       KKY20941.1 430 VTLLKNEDSMLPLskNATNSTLYVFGTDAQaqsdpnactyracntGTLGMGWGSGTANYPYLNDPITAIRNITSNvqftNSDTFPSNLSPNTSD 523
                      68***********76556669****************************************************8899875555555667899** PP

                      EEEEEEEES...SB-TT........SCSGHHSS..TTHHHHHHHHHHTTSSEEEEEEESSGG--TTT.GTTTEEEEEE-S--GCCHHHHHHHHH CS
                      xxxxxxxxxxxxxxxxx........xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C  74 vavvvvgedpeiegEgv........Drtdlalp..eaqdelikavaaanknvvvvlqsggpvavepw.keenvkAilaawlpGqegGtaiadvL 156
                      +avv++ +d   +gE+         Dr+   l   +  d+l++ +aaa + vvvv+++ gp++vepw + ++vkA++ a+lpGqe+G +++dvL
       KKY20941.1 524 IAVVFITSD---SGENTntvesntgDRDASGLVawHDGDQLVQDAAAAFSTVVVVVHTVGPIVVEPWiNLASVKAVVFAHLPGQEAGSSLTDVL 614
                      *********...5555545566666665555554489*******************************999*********************** PP

                      TTSS---B--SS-EESSSGGG...............................S.-----SETTTT-BCH CS
                      xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx..................xx.xxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C 157 fGdvnPsGkLpvtfpksledlpd..dyyeekdt..................yk.fegtplYpeGlglsY 204
                      +Gd++PsG+Lp+++p +++d+pd  +  e   +                   + ++ tp Yp+G+glsY
       KKY20941.1 615 YGDYSPSGHLPYSIPVTESDYPDsvSIREF--EwvqvqdtfseglyidyryLNaQNITPRYPFGHGLSY 681
                      *********************995433222..1223455678888888554223445555******999 PP

>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.4   0.0   3.5e-45   2.1e-41      63     317 ..     115     368 ..      75     370 .. 0.83

  Alignments for each domain:
  == domain 1  score: 142.4 bits;  conditional E-value: 3.5e-45
                    ...S--EEEE---BTTB---SSS.---S-HHHHHHHT-HHHHHHHHHHHHHHHHHHT--EE---B--.---STTSSSGGGSS-SSHHHHHHHHHHH CS
  Glyco_hydro_3  63 rlgiPlllavDqegGlvqrlgeg.tlfPsalalaatssldlikelgriiakelralgididfaPvvd.vnrdprngigvrsFsedpelvaalaaam 156
                    r giP l+  D   G+   l ++ t fP+ +  +at+++dl++  g +++ke+r  g++i+++P+v  ++r+pr g++ ++F++dp l a  +a++
     KKY20941.1 115 RFGIPNLCLEDSALGVA--LTDNnTAFPAGITVGATWNKDLLYSRGVALGKEARGKGVNIQLGPTVGpLGRKPRGGRNWEGFGADPVLQAVGGAET 208
                    89**************9..44444*****************************************9659*************************** PP

                    HHHHHHTT-EEEEEEETTGTT-SSE......TTTSEEB----HHHHHHTTHHHHHHHHHTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS- CS
  Glyco_hydro_3 157 vkGlqgagvaatvKHFpghGdgavd......shkelptvdhseeelrevdlvpfqaaieagvdsVMtaHvqfpaldgtpatgskklltdvLRkelG 246
                    +kG+q++gv+at+KH  g  + +        +    + ++++ + ++e ++ pf + i agv++VM +   +++++g+ a+ +++ l ++L++e+G
     KKY20941.1 209 IKGMQSQGVIATIKHWVGNEQEKYRmdiiphGLMRGISSNIDDRTMHELYAWPFAEGILAGVGAVMSS---YNEVNGSAASQNSYTLNNILKDEMG 301
                    ******************844332211111133455678999**************************...************************* PP

                    --SEEEES-TTSHHHHCCS-HHHHHHHHHHHT-SBEES-S---SGHHHHHHHHHTTSS-HHHHHHHHHHHH CS
  Glyco_hydro_3 247 FdGvvvsDalamkeiadrggkeeavvlaLkAGvDilLvpeertseikalkkavkeGeltearidesvrrvl 317
                    F+G+v+ D+l   +i+  ++      +++     i L+  +++    +l  av +G+++  r+++  +r++
     KKY20941.1 302 FQGFVMCDWL--SQISGVASALSGLDMTMPGDGAIPLLGLAYW--AYGLSTAVLNGSVPLTRLNDMTTRIV 368
                    **********..4554444444444444444444444444444..67888899999999999998888886 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   5.4e-23   3.2e-19       2      71 .]     805     884 ..     804     884 .. 0.93

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 5.4e-23
                 EEEEEEEESS-S...TTSBS-EEEEEEEEE.E-TT-EEEEEEEEECGGG-EEETTTTEEE--S......CEEEEEEESSS CS
    Fn3-like   2 vvqlYvsdpess...verpvkeLkgFekve.LapGesktvtftldrkdlsvwdeekqkwvvep......Geytvlvgtss 71 
                 v++l+v+ p+ss    ++pv +L++F k+e LapGes++v +tl+rkdlsvwd+++q+w+++        ++t++vg+ss
  KKY20941.1 805 VAMLFVQHPSSSvtgYDTPVIQLRDFIKTEtLAPGESQEVCLTLTRKDLSVWDTTSQNWIIPGldddglADFTFWVGQSS 884
                 99********8722258*********************************************988998899*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (908 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 6664.33
//
Query:       KKY20942.1  [L=355]
Description: putative 2-nitropropane dioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-56  192.1   1.3    2.3e-56  191.6   1.3    1.2  1  NMO           Nitronate monooxygenase
    3.6e-12   45.9   2.4    5.9e-12   45.2   2.4    1.3  1  IMPDH         IMP dehydrogenase / GMP reductase domain
    2.4e-07   30.1   2.0    3.8e-07   29.4   2.0    1.2  1  FMN_dh        FMN-dependent dehydrogenase
      0.001   18.3   1.2     0.0021   17.3   1.1    1.5  2  Glu_synthase  Conserved region in glutamate synthase
  ------ inclusion threshold ------
      0.054   12.7   0.3      0.054   12.7   0.3    1.5  2  DHO_dh        Dihydroorotate dehydrogenase


Domain annotation for each model (and alignments):
>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.6   1.3   6.5e-60   2.3e-56       2     330 ..       9     339 ..       8     340 .. 0.87

  Alignments for each domain:
  == domain 1  score: 191.6 bits;  conditional E-value: 6.5e-60
         NMO   2 slltellkikppvvqpgmggiskarLaaavsnaGgLGvlasgyltaDrlakeirkvkalt...dkPfgvnlflpkkdaadraekykkeleeaalelnie 97 
                 +++t+llki++pv  +gm + ++++Laaavs+aGgLGv+++   t+D l+++i+++k      d+Pfgv l++p+     r             ++   
  KKY20942.1   9 TTVTDLLKINHPVLLAGMNVAAGPKLAAAVSDAGGLGVIGGVGYTPDMLREQIAELKDYLknkDAPFGVDLLIPQVGGSAR-----------KTNYDYT 96 
                 6789************************************9889*************86522256*********9888877...........3455566 PP

         NMO  98 egvrfyrkvevvldekvevvsfgfglpteevvarlkeagvvliptissvkearkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavd... 193
                 +g    + v+++ + ++++   ++g+p++ vv++l++ag++ + +i+  k+++k    G D++ +qG+e+GGh+G++      ++ L+p+v++  +   
  KKY20942.1  97 KGKL-NELVDIIIESGAKLFVSAVGVPPKAVVEKLHKAGILYMNMIGHPKHVQKCLDIGVDIICAQGGEGGGHTGDV-----PTTVLIPTVAKLCAgkk 189
                 6655.66778888888999999*****************************************************33.....479*********9999* PP

         NMO 194 .......iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesdakdahkkklleaklddteltsavsGrpaRalatelleeleeakiatlalpeah 285
                        + viAaGG+++++ +aaaLalGAsgv igtrf+l +e++a++ah++++  a++dd   t  + Grp R+ ++  + + ee++++ ++  +++
  KKY20942.1 190 spltgqdVQVIAAGGLFNGQSLAAALALGASGVWIGTRFILSEEAGAPKAHQEAVRTAGFDDNIRTIIFTGRPLRVRNNPYIANWEENRQNEIKELTNK 288
                 ************************************************************************************999665555444443 PP

         NMO 286 ......elakkiraalveagnteegllwagqgidrldkiisvkeLiesLve 330
                       +      + l++ +  ++  +  g++   ++++ s+k ++ +++ 
  KKY20942.1 289 gvipveHDFESKGDELSDDDIDNARPFLMGKASAAVTELKSAKAIVDEMID 339
                 344555444445567777766666778889999999999999999998875 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   2.4   1.6e-15   5.9e-12      22     247 ..       6     236 ..       1     247 [. 0.85

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 1.6e-15
                 B--EESSTTEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SS.S-HHHHHHHHHHHHTSTTSXBXTTSXB-EEEEE..-SSTTHHHHHHHHHHTT- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
       IMPDH  22 dlktkltkkiklniPlvsaamdtvtesemAialareGgigvihkn.lsieeqaeevkkvkrspnaakdekgrllvgaav..gvkedalervkalveagv 117
                 +++t++t+ +k+n P++ a m+  ++ ++A a++ +Gg+gvi     +++   e+++++k + +++    g  l    v  ++++ + +  k  +++ v
  KKY20942.1   6 KIRTTVTDLLKINHPVLLAGMNVAAGPKLAAAVSDAGGLGVIGGVgYTPDMLREQIAELKDYLKNKDAPFGVDLLIPQVggSARKTNYDYTKGKLNELV 104
                 789***************************************986478999999******88655444444433333331134556677778888999* PP

                 SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEE.E-SHHHHHHHHHTT-SEEEE-SS-STTBHHHHHCSB---HHHHHHHHHH.HHCTCT-EEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
       IMPDH 118 dvlvvdsahghsekvleavkeikkkveeveviaGn.vataegakaLieagadavkvGiGpGsiCttrvvagvGvpqltAvaevae.aakkagvpviaDG 214
                 d+++   a+   + v    k++ +k+++  ++  n +   + +++ ++ g+d++    G G   t  v + v +p +  +++  +   + ++v+via G
  KKY20942.1 105 DIIIESGAKLFVSAVGVPPKAVVEKLHKAGILYMNmIGHPKHVQKCLDIGVDIICAQGGEGGGHTGDVPTTVLIPTVAKLCAGKKsPLTGQDVQVIAAG 203
                 ****************999***99999998986662678899**************99********************99998884678899******* PP

                 ---SHHHHHHHHHTT-SEEEESCCCTTBTTSSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 215 GikysgdivkAlaaGadavmlGsllagteEspg 247
                 G+ + + ++ Ala+Ga+ v +G  +   eE+ +
  KKY20942.1 204 GLFNGQSLAAALALGASGVWIGTRFILSEEAGA 236
                 ***********************9999999865 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   2.0   1.1e-10   3.8e-07     224     318 ..     141     243 ..     130     256 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.1e-10
                 E-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCHHHHHHHH..........SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHH CS
      FMN_dh 224 vltaedakraveaGvdgivvSNHGGRqldgapatidvLpeiveav........ggrievlvDgGirrGsDvlkAlalGAdavllGRpflyglaagGeeG 314
                 + +++ +++++++Gvd+i      G    g ++t   +p++++ +        g++++v++ gG  +G+  + AlalGA++v++G  f+    ag  + 
  KKY20942.1 141 IGHPKHVQKCLDIGVDIICAQGGEGGGHTGDVPTTVLIPTVAKLCagkkspltGQDVQVIAAGGLFNGQSLAAALALGASGVWIGTRFILSEEAGAPKA 239
                 679999***********998765555555666667788999998855544444459******************************9998877766555 PP

                 HHHH CS
      FMN_dh 315 verv 318
                  +++
  KKY20942.1 240 HQEA 243
                 5555 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.4   5.1e+03      55      77 ..       8      30 ..       4      44 .. 0.76
   2 !   17.3   1.1   5.8e-07    0.0021     224     309 ..     151     231 ..     130     254 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.4
                  GGGS--HHHHHTTEE---B-TTT CS
  Glu_synthase 55 leevepalkikkriltsamSyGa 77
                   ++v   lki++++l ++m + a
    KKY20942.1  8 RTTVTDLLKINHPVLLAGMNVAA 30
                  56788888999999999997654 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 5.8e-07
                   HHTT-SEEEEE-TT--..-SSEEHHHHHHB---HHHHHHHHHHHHHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SHHHHHH CS
  Glu_synthase 224 akanadiilidGleGG..TGAspkssikhaGlPlelalaevdqtlkeeglrdrvsliadGglktgadvvkalalGAdavgigtaalia 309
                    + ++dii  +G eGG  TG +p++    + +P+++ l + ++        + v++ia+Ggl  g+ ++ alalGA  v igt  +++
    KKY20942.1 151 LDIGVDIICAQGGEGGghTGDVPTT----VLIPTVAKLCAGKKSP---LTGQDVQVIAAGGLFNGQSLAAALALGASGVWIGTRFILS 231
                   5667888888888887455555554....4478888887776543...34689******************************98876 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   1.5e-05     0.054     240     290 ..     192     242 ..     123     246 .. 0.79
   2 ?   -3.3   0.0       1.1   3.9e+03     178     197 ..     330     349 ..     285     353 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.5e-05
                 HTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHHHGTCHHHHHHHH CS
      DHO_dh 240 rlkkeipiIgvGGiesgeDalekieaGAslvqvytalvfegpkiakkikke 290
                  + +++++I+ GG++ g+     +  GAs v ++t ++ ++ + a+k ++e
  KKY20942.1 192 LTGQDVQVIAAGGLFNGQSLAAALALGASGVWIGTRFILSEEAGAPKAHQE 242
                 47789********************************99988888877776 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHTECEEEE.. CS
      DHO_dh 178 kkdiadvllelkldgiivtN 197
                  k+i+d++    ++ i+ +N
  KKY20942.1 330 AKAIVDEMIDEAVAVINKSN 349
                 23333333344444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2451.65
//
Query:       KKY20943.1  [L=808]
Description: putative folic acid synthesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-77  259.9   0.1    3.4e-77  259.4   0.1    1.2  1  Pterin_bind  Pterin binding enzyme
    1.5e-36  125.3   0.1    3.3e-36  124.2   0.1    1.6  1  HPPK         7,8-dihydro-6-hydroxymethylpterin-pyrophosphokin


Domain annotation for each model (and alignments):
>> Pterin_bind  Pterin binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.4   0.1   3.8e-81   3.4e-77       1     244 []     464     715 ..     464     715 .. 0.98

  Alignments for each domain:
  == domain 1  score: 259.4 bits;  conditional E-value: 3.8e-81
                  EEEEETTTTTCHCCHHC..THHHHHHHHHHHHHHTT-SEEEEESS-TSTT--CCHHHHHHHHHHHHHHHHHH..HC.TSEEEEE-S-HHHHHHHHHTT CS
  Pterin_bind   1 mgilNvtpdsfsdggkf..edldkalaqarkmveeGAdilDiggestrPgaervdeeeelervvpvlealrd..ea.dvpisiDttkaevaeaAlkag 93 
                  m+ilN+tpdsfsd g +  ed+++  +++r+ +++GA+i+D+gg+strP+a+ +++++e++rvvpv++ +r+  ea d+ is+Dt+ a+va+aA++ag
   KKY20943.1 464 MAILNMTPDSFSDAGTYfqEDVEALASTIRNFIAAGATIIDVGGQSTRPNATLLSPRDEINRVVPVVKLIRSlpEAkDIAISVDTFYARVAKAAIDAG 561
                  89*************998889999999*********************************************99999********************* PP

                  SEEEEETTTTSSSTTHHHHHHHHT-EEEEESECSSTTTHCCCCCCCSSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHHH CS
  Pterin_bind  94 adivNdvsgeerdpkmlelvaeagaavvvmhmrgtpktmqeeegqyedvveeveaflearveaaeeaGvaperillDpgigfgkteehnlellrrlde 191
                  adi+Nd+sg++ d++++++va  + ++v+ h+rg+p+tm+  + +++ vv+ v+ +l+++v++a eaGv+p+ri+lDpgigf+k+ ++nlellr++++
   KKY20943.1 562 ADIINDISGGDLDAELFPTVAALRKTIVISHTRGNPQTMSSLTHYEHGVVAGVAEELHQKVQKALEAGVRPWRIILDPGIGFAKSHDQNLELLRNFSR 659
                  *******************************************99***************************************************** PP

                  HHHTTS...SEBEEEGTTGHHHHHHHCTTCHGHHHHHHHHHHHHHHHTT-SEEEES CS
  Pterin_bind 192 lreale...vpvllGvSrksflgrllelgkaeeRdagtaaflalaaaaGadivrVh 244
                  lr++ +   +p+l+G+Srk+f+g ++++++a eR +gtaa+++ ++++G divrVh
   KKY20943.1 660 LRNHEGlneYPWLVGTSRKKFIGTVTDVTDAGERIWGTAATVTSSIREGTDIVRVH 715
                  *9999899****************999999*************************9 PP

>> HPPK  7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.2   0.1   3.6e-40   3.3e-36       1     112 []     282     409 ..     282     409 .. 0.95

  Alignments for each domain:
  == domain 1  score: 124.2 bits;  conditional E-value: 3.6e-40
                 EEEEEE-SSSHHHHHHHHHHHHHH...EEEEE---EEE--S...SS-GEEEEEEEEEESS-HHHHHHHHHHHHHHTT--C..STS-BS-EEEEEEET.. CS
        HPPK   1 ylalGsNlgdreanleealealee...kvvkvSslyetepv...dqpdFlNavvevetelspeellealkeiEkelgrer..rwgpRtlDlDillyg.. 89 
                 ++alGsN+gdr +++e+a+++le+   +v +vS+lyet+++   dq+dFlN v+ev+t l+p ell++l++iEk+lgr++  ++gpR++DlDi+ly+  
  KKY20943.1 282 IIALGSNIGDRIEHIEDAIAELESrglAVQRVSPLYETKAMyviDQNDFLNGVCEVQTVLRPMELLDVLQDIEKSLGRVKliEKGPRNIDLDIVLYDnk 380
                 59********************88676678***********9999**********************************87779*************** PP

                 ......EEES-TTGGG-HHHHHHHHHHCT CS
        HPPK  90 ......ltlPhprlaeraFvlvplaelap 112
                       l++Ph+ + er+Fvl+pla+l p
  KKY20943.1 381 risnhrLIVPHKLMLEREFVLKPLAKLIP 409
                 *************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.53
# Mc/sec: 4596.29
//
Query:       KKY20944.1  [L=195]
Description: hypothetical protein UCRPC4_g03951 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.34s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 1237.27
//
Query:       KKY20945.1  [L=416]
Description: putative kelch repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-18   66.3  10.3    8.4e-06   25.9   0.0    6.2  6  Kelch_3   Galactose oxidase, central domain
    1.7e-17   63.2  14.2    9.6e-08   31.9   0.1    6.1  6  Kelch_4   Galactose oxidase, central domain
    1.8e-14   53.3   2.0      0.003   17.5   0.0    5.7  6  Kelch_5   Kelch motif
    2.6e-13   49.7   0.2    0.00063   20.0   0.0    4.4  6  Kelch_6   Kelch motif
    4.6e-12   45.3   0.1     0.0051   16.4   0.0    4.4  4  Kelch_1   Kelch motif
    1.7e-07   30.9   6.8     0.0099   15.8   0.5    5.0  4  Kelch_2   Kelch motif


Domain annotation for each model (and alignments):
>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0029       8.6      35      49 .]      43      57 ..      28      57 .. 0.87
   2 !   22.4   0.0   3.5e-08   0.00011       1      47 [.      58     114 ..      58     116 .. 0.77
   3 !   25.9   0.0   2.8e-09   8.4e-06       2      48 ..     118     172 ..     117     172 .. 0.82
   4 !   10.4   0.1   0.00021      0.62       1      42 [.     176     217 ..     176     224 .. 0.82
   5 ?    1.9   0.5     0.094   2.8e+02      24      45 ..     265     286 ..     226     287 .. 0.71
   6 ?   -2.7   0.0       2.6   7.8e+03       4      20 ..     394     409 ..     392     411 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0029
     Kelch_3 35 aslppaRaghaatai 49
                +s p +R++h++t+i
  KKY20945.1 43 SSVPLPRSSHSLTVI 57
                67899********97 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 3.5e-08
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydldtn.....tWaei......as..lppaRaghaat 47 
                 gdr+y+fGG+  ++++++ndv v+ +++n     +   i      +s   p aR+gh+a+
  KKY20945.1  58 GDRAYVFGGEIEPREPVSNDVEVLIIGRNnakaeS---ItakpvdGSegVPAARVGHTAS 114
                 89**********************88777443441...34444573333699******97 PP

  == domain 3  score: 25.9 bits;  conditional E-value: 2.8e-09
     Kelch_3   2 drlyifGGlgd...dgqdrlndvyvydldtntWaeiaslpp.....aRaghaata 48 
                 +r+++fGG+g+   +  + ++ ++v+d+  + W  ++++p+     +R++ha++a
  KKY20945.1 118 NRMFVFGGRGGaemTALEENGRLWVFDPKEEGWLYLDPPPGteypcPRSYHASSA 172
                 89********6544444444**************777776667889******986 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00021
     Kelch_3   1 gdrlyifGGlgddg.qdrlndvyvydldtntWaeiaslpp.aRa 42 
                 g+ ++i+ G+   + + rl d++++ l+ ++Wa+ ++ p+ aR 
  KKY20945.1 176 GNVIFIHAGCA--SdGSRLVDTWAFYLEEGKWARFPDAPGpARG 217
                 78999******..4499******************888873554 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.094
     Kelch_3  24 ydldtntWaeiaslppaRagha 45 
                 +d++ ++  +++s p +R+ +a
  KKY20945.1 265 FDFSETEASTTSSIPAPRSLAA 286
                 4555556667799999999987 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 2.6
     Kelch_3   4 lyifGGlgddgqdrlnd 20 
                 +++ GG +  g++rl+d
  KKY20945.1 394 FLVWGGID-EGNERLGD 409
                 56779999.79999887 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   3.7e-08   0.00011       1      34 [.      48      81 ..      48      90 .. 0.87
   2 !    9.4   0.8   0.00035       1.1       1      24 [.     107     129 ..     107     147 .. 0.82
   3 !   31.9   0.1   3.2e-11   9.6e-08       1      48 [.     164     212 ..     164     213 .. 0.95
   4 ?   -0.6   0.1      0.45   1.3e+03       2      25 ..     216     238 ..     215     249 .. 0.77
   5 ?    1.5   0.0     0.099     3e+02      11      36 ..     295     328 ..     281     330 .. 0.77
   6 ?    2.0   0.3      0.07   2.1e+02       9      30 ..     388     409 ..     380     412 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.7e-08
     Kelch_4  1 pRaghsatsipdgtiylfGGrgedg.tllndlyll 34
                pR +hs+t+i+ ++ y+fGG+ e+   ++nd+ +l
  KKY20945.1 48 PRSSHSLTVIG-DRAYVFGGEIEPRePVSNDVEVL 81
                8*********6.9**********965888887765 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00035
     Kelch_4   1 pRaghsatsipdgtiylfGGrged 24 
                 +R+gh+a    +++ ++fGGrg+ 
  KKY20945.1 107 ARVGHTASGA-RNRMFVFGGRGGA 129
                 7*********.599999****975 PP

  == domain 3  score: 31.9 bits;  conditional E-value: 3.2e-11
     Kelch_4   1 pRaghsatsipd.gtiylfGGrgedgtllndlylldlstntWrrlgslP 48 
                 pR +h++ + +d + i+++ G+ +dg++l d++++ l+ ++W r +++P
  KKY20945.1 164 PRSYHASSASDDgNVIFIHAGCASDGSRLVDTWAFYLEEGKWARFPDAP 212
                 9*********7758*****************************999888 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.45
     Kelch_4   2 RaghsatsipdgtiylfGGrgedg 25 
                 R+g ++t+ + + ++ fGG  +++
  KKY20945.1 216 RGGPALTYGQ-DMLWRFGGFDGKT 238
                 5555677775.89999***98875 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.099
     Kelch_4  11 pdgtiylfGGrgedg........tllndlylldl 36 
                 ++++++l  G+g++         +++ d++++ l
  KKY20945.1 295 GRDYLILALGEGDPSkighagagKFFQDIWIYQL 328
                 668888888999998888999999******9987 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.07
     Kelch_4   9 sipdgtiylfGGrgedgtllnd 30 
                 s++   + ++GG+ e +++l+d
  KKY20945.1 388 STGTKQFLVWGGIDEGNERLGD 409
                 56677899*******9999999 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     1e-06     0.003       1      37 [.      45      81 ..      45      82 .. 0.93
   2 !   16.1   0.0   2.7e-06     0.008       1      38 [.     104     144 ..     104     147 .. 0.75
   3 !    8.8   0.2   0.00053       1.6       1      22 [.     161     184 ..     161     199 .. 0.75
   4 ?    0.3   0.0      0.25   7.5e+02       2      26 ..     212     238 ..     211     245 .. 0.71
   5 ?    4.0   0.0     0.017        51      27      40 ..     316     329 ..     309     330 .. 0.84
   6 ?   -2.3   0.1       1.6   4.9e+03      18      28 ..     395     404 ..     395     412 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1e-06
     Kelch_5  1 iPppRaghcavtvsekiYvyGGkvgrdgsvsddvyvL 37
                +P pR++h+  + ++  Yv+GG + +++ vs+dv vL
  KKY20945.1 45 VPLPRSSHSLTVIGDRAYVFGGEIEPREPVSNDVEVL 81
                6**********************99899999999887 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 2.7e-06
     Kelch_5   1 iPppRaghcavtvsekiYvyGGkvg...rdgsvsddvyvLd 38 
                 +P++R gh a ++ + ++v+GG++g   +  + ++ ++v+d
  KKY20945.1 104 VPAARVGHTASGARNRMFVFGGRGGaemTALEENGRLWVFD 144
                 6***********************83333333345666665 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00053
     Kelch_5   1 iPppRaghcavtvs.ek.iYvyGG 22 
                 +P+pR++h++ + + ++ i+++ G
  KKY20945.1 161 YPCPRSYHASSASDdGNvIFIHAG 184
                 6**********9644662666666 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.25
     Kelch_5   2 PppRaghcavtvs.ekiYvyGGkvg.r 26 
                 P p +g+ a t++ + ++ +GG++g +
  KKY20945.1 212 PGPARGGPALTYGqDMLWRFGGFDGkT 238
                 5555667777777677888****9854 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.017
     Kelch_5  27 dgsvsddvyvLdlp 40 
                  g+++ d+++++lp
  KKY20945.1 316 AGKFFQDIWIYQLP 329
                 688999******99 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 1.6
     Kelch_5  18 YvyGGkvgrdg 28 
                 +v+GG++ +++
  KKY20945.1 395 LVWGGID-EGN 404
                 699**99.344 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.1e-07   0.00063       1      33 [.      48      81 ..      48      89 .. 0.92
   2 !   19.6   0.0   2.7e-07    0.0008       1      47 [.     107     157 ..     107     163 .. 0.93
   3 ?    4.7   0.0     0.014        41       2      49 ..     165     214 ..     164     216 .. 0.73
   4 ?   -3.4   0.0       4.6   1.4e+04      13      22 ..     227     236 ..     218     255 .. 0.68
   5 ?   -2.7   0.0       2.9   8.6e+03      24      34 ..     317     327 ..     300     329 .. 0.77
   6 ?   -2.9   0.0       3.3   9.9e+03      13      29 ..     393     409 ..     385     412 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.1e-07
     Kelch_6  1 praghslvsvggkiYifGGytds.spylnkvwvy 33
                pr +hsl+++g++ Y+fGG   + +p +n+v+v+
  KKY20945.1 48 PRSSHSLTVIGDRAYVFGGEIEPrEPVSNDVEVL 81
                699****************************997 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 2.7e-07
     Kelch_6   1 praghslvsvggkiYifGGytds....spylnkvwvydpetksWeqlpplp 47 
                 +r+gh++  + ++ ++fGG++++     +   ++wv+dp+   W  l p+p
  KKY20945.1 107 ARVGHTASGARNRMFVFGGRGGAemtaLEENGRLWVFDPKEEGWLYLDPPP 157
                 5899*****************************************999988 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.014
     Kelch_6   2 raghsl.vsvggkiYif..GGytdsspylnkvwvydpetksWeqlpplpvp 49 
                 r +h++ +s +g +  +  G ++d +++l + w + +e ++W + p+ p+p
  KKY20945.1 165 RSYHASsASDDGNVIFIhaGCASD-GSRLVDTWAFYLEEGKWARFPDAPGP 214
                 554444399998666663333333.68999999999***********9987 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 4.6
     Kelch_6  13 kiYifGGytd 22 
                  ++ fGG ++
  KKY20945.1 227 MLWRFGGFDG 236
                 4555666654 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 2.9
     Kelch_6  24 spylnkvwvyd 34 
                 ++++ ++w+y 
  KKY20945.1 317 GKFFQDIWIYQ 327
                 78899999996 PP

  == domain 6  score: -2.9 bits;  conditional E-value: 3.3
     Kelch_6  13 kiYifGGytdsspylnk 29 
                 ++ ++GG + ++++l +
  KKY20945.1 393 QFLVWGGIDEGNERLGD 409
                 56899999877666555 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.7e-06    0.0051       1      32 [.      48      81 ..      48      83 .. 0.96
   2 !   14.0   0.0   9.2e-06     0.027       1      39 [.     107     150 ..     107     157 .. 0.91
   3 !    9.3   0.0   0.00027      0.82      11      44 ..     176     210 ..     164     212 .. 0.91
   4 ?   -0.9   0.0      0.43   1.3e+03      11      24 ..     225     238 ..     215     249 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.7e-06
                BBBSEEEEEETTEEEEEEEBCS..SSBEEEEEEE CS
     Kelch_1  1 aragagavvvggkiYviGGsdg..gnalssvevy 32
                +r+ ++ +v+g++ Yv+GG  +     +++vev+
  KKY20945.1 48 PRSSHSLTVIGDRAYVFGGEIEprEPVSNDVEVL 81
                79******************************96 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 9.2e-06
                 BBBSEEEEEETTEEEEEEEBCS.....SSBEEEEEEEETTTTEE CS
     Kelch_1   1 aragagavvvggkiYviGGsdg.....gnalssvevyDpetntW 39 
                 ar g++a   +++++v+GG+ g      +   +++v+Dp++  W
  KKY20945.1 107 ARVGHTASGARNRMFVFGGRGGaemtaLEENGRLWVFDPKEEGW 150
                 699************************************98766 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00027
                 TTEEEEEEEBCS.SSBEEEEEEEETTTTEEEEECC CS
     Kelch_1  11 ggkiYviGGsdg.gnalssvevyDpetntWrelps 44 
                 g+ i++  G+ + g++l + +++ +e+++W + p+
  KKY20945.1 176 GNVIFIHAGCASdGSRLVDTWAFYLEEGKWARFPD 210
                 799***************************99887 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.43
                 TTEEEEEEEBCSSS CS
     Kelch_1  11 ggkiYviGGsdggn 24 
                 ++ +  +GG+dg +
  KKY20945.1 225 QDMLWRFGGFDGKT 238
                 5555558****943 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00051       1.5       1      20 [.      48      67 ..      48      86 .. 0.83
   2 !   15.8   0.5   3.3e-06    0.0099       1      42 [.     107     150 ..     107     157 .. 0.72
   3 ?    1.8   0.0     0.087   2.6e+02       1      35 [.     164     199 ..     164     209 .. 0.75
   4 ?    3.5   0.1     0.025        76      14      34 ..     394     412 ..     388     415 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00051
     Kelch_2  1 rrgghsssvpggkiyvvGGa 20
                +r+ hs +v+g++ yv+GG 
  KKY20945.1 48 PRSSHSLTVIGDRAYVFGGE 67
                799****************7 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 3.3e-06
     Kelch_2   1 rrgghsssvpggkiyvvGGa.......htdnpnlsssdvhvldlekhvW 42 
                 +r+gh++s  +++++v+GG+        + n      +++v+d++++ W
  KKY20945.1 107 ARVGHTASGARNRMFVFGGRggaemtaLEEN-----GRLWVFDPKEEGW 150
                 69******************95444443333.....3666667676666 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.087
     Kelch_2   1 rrgghsssvp..ggkiyvvGGahtdnpnlsssdvhvl 35 
                 +r+ h+ss +  g+ i++  G  ++++++  +++ ++
  KKY20945.1 164 PRSYHASSASddGNVIFIHAGC-ASDGSRLVDTWAFY 199
                 6899999999999999999999.77777766666555 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.025
     Kelch_2  14 iyvvGGahtdnpnlsssdvhv 34 
                  +v+GG+  d++n+   d ++
  KKY20945.1 394 FLVWGGI--DEGNERLGDGWI 412
                 69*****..**9999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 3089.98
//
Query:       KKY20946.1  [L=833]
Description: putative copi vesicle coat beta [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.4e-163  543.5   0.0   6.6e-161  536.3   0.0    2.2  2  Coatomer_WDAD  Coatomer WD associated region
    1.1e-28   98.9   5.7    8.5e-05   23.3   0.0    7.4  7  WD40           WD domain, G-beta repeat
    0.00028   19.7   1.1     0.0078   14.9   0.1    2.8  2  Nup160         Nucleoporin Nup120/160
     0.0041   16.1   0.2      0.048   12.6   0.1    2.3  2  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping


Domain annotation for each model (and alignments):
>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0022        10     118     193 ..     181     258 ..     129     276 .. 0.71
   2 !  536.3   0.0  1.5e-164  6.6e-161       2     445 .]     300     741 ..     299     741 .. 0.99

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0022
                    XXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX.............XXXXX CS
  Coatomer_WDAD 118 alLgvksegsvsfYDweqgklvrridvkkvknVvwsddgelvalv...skdtvyilsynleaveeedeeegvedafevl 193
                    ++L  +++ sv +YD +++++v++++ +  +nV      + + l+   s+d ++ l        e++ + g+e a +v 
     KKY20946.1 181 HILTSSDDRSVRIYDYQTKQMVASLEGHT-SNVSFAVYHNTLPLIisgSEDGTVKLWNATTFTLEQTLNYGLERAWCVA 258
                    789999999****************9775.5555443333332222224444444433333333355556666666665 PP

  == domain 2  score: 536.3 bits;  conditional E-value: 1.5e-164
                    XXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXX.X CS
  Coatomer_WDAD   2 sevrqanikkkee.lkdgellslqlkelgsieiypqslshnpngrfvlVcgdgeyiiytalalrnkaygkgldfvwvs.snrfavlessksvkifk 95 
                    sev ++ ik+ ++ lkd e+lsl++kelg+++++pq+lsh+pngrfv+  gdgey +ytala+r+ka+g++ldf+w++ sn++a++es++svk+f 
     KKY20946.1 300 SEVLSSLIKGGDSaLKDAEPLSLPTKELGRCDFFPQTLSHSPNGRFVASMGDGEYVVYTALAWRSKAFGSALDFAWGEnSNDYAIRESATSVKVFL 395
                    78999999*99889********************************************************************************** PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX................ CS
  Coatomer_WDAD  96 nfkekktksikleyqvdkifgGalLgvksegsvsfYDweqgklvrridvkkvknVvwsddgelvalvskdtvyilsynleavee.....edeeegv 186
                    nfkek+   +++ y++d + gG lLgvk +g++ f+Dw++g+lvrri+v++ k V+ws +gelval++++t+y+l++++ea+ e     + +e+gv
     KKY20946.1 396 NFKEKS-GGVDVGYSADGLSGGVLLGVKGQGGIGFFDWQTGSLVRRIEVEP-KTVYWSANGELVALCCEETFYVLRFSREAYLEgvnngTADEDGV 489
                    ******.9*******************************************.******************************99************ PP

                    ..XXXXXXX.XXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD 187 edafevlhelsesiksgaWvgdvfiYttsnnrlkylvngevgiikhldktlyilgykgkenklylldkdgnvvsleidlselefktavlrkdleev 282
                    edafe++++++e++ sg+Wvgd f+Y+ts+ rl+ylv++++++i+++d++ +ilgy++++++lyl  kd++v+s+ ++ls++e++t+vlr+dl++ 
     KKY20946.1 490 EDAFEIVTDINETVVSGVWVGDSFVYSTSS-RLSYLVGDQTNTISTFDSPQFILGYLPRDGRLYLTSKDFEVISFALPLSVVEYQTLVLRGDLDS- 583
                    ******************************.***************************************************************9. PP

                    XXXXXXXXXX.......XXXXXXXXXXXXXXXX-GGGSS-HHHHHHHHHHTT-HHHHHHHHHHH--HHHHHHHHHHHHHTT-HHHHHHHHHHTT-H CS
  Coatomer_WDAD 283 lkiiaasnllpeipkeegqkiirfLekkgypelAlqlvqDpetkFdLAlelgnLelAlelakelddeekWkkLgdaAlsqgniklaeeayqkakdf 378
                         a++llp+ip ++ +ki+rfLe +gy++ Al++++Dpe++F+LAl+l nL +Ale+ake d+++kWk++gdaAl+ +++ laee++ +akd+
     KKY20946.1 584 -----AQSLLPDIPADQTNKIARFLEGQGYKSEALEVATDPEHRFELALSLSNLAVALEIAKEVDQDHKWKTVGDAALAAWDLALAEECFVNAKDI 674
                    .....69***************************************************************************************** PP

                    HHHHHHHHHHT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHHTT. CS
  Coatomer_WDAD 379 dkLllLylstgnkekLkkLakiaekkgdyniafqaalllgdvekcvdlLiksgrlpeAalfAktygl 445
                     +LllLy+s+gn+++Lk La++a + g  n+af+a +   dv++ ++lL+k++r++eA+lfA+ty++
     KKY20946.1 675 GSLLLLYSSSGNSAGLKALAEQADAVGANNVAFSALWTASDVDASIELLLKTNRAAEAVLFAQTYKP 741
                    *****************************************************************86 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   0.00012      0.53      12      38 .]      39      65 ..      21      65 .. 0.85
   2 !   21.8   0.0   5.4e-08   0.00024       4      37 ..      72     106 ..      69     107 .. 0.92
   3 !   22.1   0.1   4.3e-08   0.00019       1      38 []     111     150 ..     111     150 .. 0.86
   4 !   14.3   0.0   1.3e-05     0.058       5      38 .]     158     195 ..     154     195 .. 0.83
   5 !   23.3   0.0   1.9e-08   8.5e-05       3      38 .]     201     237 ..     199     237 .. 0.83
   6 ?   -3.0   0.0       3.7   1.7e+04      14      35 ..     255     276 ..     255     277 .. 0.72
   7 ?    1.3   0.0      0.17   7.6e+02      16      32 ..     337     352 ..     330     355 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
                SEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40 12 svtslafspdgawlasGsdDgtvriWd 38
                +v++++f   ++w++ GsdD ++r+++
  KKY20946.1 39 PVRACCFVERKNWVIGGSDDFKIRVYN 65
                48999**********99********97 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 5.4e-08
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 ++++++H + ++s+ ++p  ++l+++sdD t+++W
  KKY20946.1  72 VTEFEAHpDYIRSVVVHPTLPYLLTASDDMTIKLW 106
                 6789***777************************* PP

  == domain 3  score: 22.1 bits;  conditional E-value: 4.3e-08
                 TEEEEEEESSSS.EEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGHss.vtsla.fspdgawlasGsdDgtvriWd 38 
                 ++cl+t++ H + v s+a +++d + +as++ D+tvr+Wd
  KKY20946.1 111 WRCLQTFESHAHyVMSIAiNPKDTNQFASACLDRTVRVWD 150
                 68********556*****77777777999999*******9 PP

  == domain 4  score: 14.3 bits;  conditional E-value: 1.3e-05
                 EEEESS..SSEEEEEEETTSSE..EEEEETTSEEEEEE CS
        WD40   5 rtltGH..ssvtslafspdgaw..lasGsdDgtvriWd 38 
                  t+++H  ++v+ +++ p g+   ++++sdD++vri+d
  KKY20946.1 158 FTIDAHetKGVNYVSYYPGGDKphILTSSDDRSVRIYD 195
                 5778998777*9999888888887889999*******8 PP

  == domain 5  score: 23.3 bits;  conditional E-value: 1.9e-08
                 EEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 
                  + +l+GH s+v s+a ++   ++++sGs+Dgtv++W+
  KKY20946.1 201 MVASLEGHtSNV-SFAvYHNTLPLIISGSEDGTVKLWN 237
                 67899***8778.44448888899*************8 PP

  == domain 6  score: -3.0 bits;  conditional E-value: 3.7
                 EEEEEETTSSEEEEEETTSEEE CS
        WD40  14 tslafspdgawlasGsdDgtvr 35 
                 +++a+++ ++ +a G dDg v 
  KKY20946.1 255 WCVATHRAQQNVALGFDDGAVV 276
                 5888777777776688898875 PP

  == domain 7  score: 1.3 bits;  conditional E-value: 0.17
                 EEEETTSSEEEEEETTS CS
        WD40  16 lafspdgawlasGsdDg 32 
                 l+ sp+g+++a ++ Dg
  KKY20946.1 337 LSHSPNGRFVA-SMGDG 352
                 789******97.54365 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5   0.1    0.0098        44     229     259 ..      90     120 ..      67     136 .. 0.81
   2 !   14.9   0.1   1.7e-06    0.0078     228     308 ..     131     237 ..     119     248 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.0098
                 TTTEEEEEETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclatidll 259
                 +  yl+++s d ++++W  ++ +cl t++  
  KKY20946.1  90 TLPYLLTASDDMTIKLWEFDSWRCLQTFESH 120
                 6679**********************97765 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.7e-06
                 ..TTTEEEEEETT-EEEEEETTTTEEEEEEE--.-SSSTTS--SSEESEEESSSSEEEE..............................E.......-- CS
      Nup160 228 i.gqtylfalsrdgkLrvWnlltgkclatidllrdeeaqdessskstldpaesslirvs....................dggqsylvvty.......sp 298
                   + +  +++++d+++rvW+l++ ++  tid    e++ ++ +s+ ++++++  l+++                      +  ++++v+        s 
  KKY20946.1 131 PkDTNQFASACLDRTVRVWDLSSPRPRFTIDAH--ETKGVNYVSYYPGGDKPHILTSSDdrsvriydyqtkqmvaslegHTSNVSFAVYHntlpliiSG 227
                 357778899************************..6666666666666666666666554444444444444444477755555555544555555577 PP

                 GGG-EEEEEE CS
      Nup160 299 ssggefkvwk 308
                 s++g+ k+w+
  KKY20946.1 228 SEDGTVKLWN 237
                 7777777776 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   1.1e-05     0.048     261     288 ..      96     122 ..      84     152 .. 0.75
   2 ?    0.7   0.0     0.046   2.1e+02     263     286 ..     227     250 ..     190     274 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.1e-05
    Ge1_WD40 261 tgadnnselklWscelWtClqtikfaps 288
                 t a+++  +klW  ++W+Clqt + +++
  KKY20946.1  96 T-ASDDMTIKLWEFDSWRCLQTFESHAH 122
                 4.556788**************987766 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.046
    Ge1_WD40 263 adnnselklWscelWtClqtikfa 286
                  +++  +klW++ ++t  qt+++ 
  KKY20946.1 227 GSEDGTVKLWNATTFTLEQTLNYG 250
                 334456888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (833 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.36s 00:00:01.06 Elapsed: 00:00:00.49
# Mc/sec: 5094.05
//
Query:       KKY20947.1  [L=298]
Description: putative eukaryotic translation initiation factor 3 subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-44  151.2   2.4    2.9e-44  150.4   2.4    1.4  1  eIF3g          Eukaryotic translation initiation factor 3 sub
      3e-15   55.8   0.7    4.1e-15   55.3   0.0    1.6  2  RRM_1          RNA recognition motif. (a.k.a. RRM, RBD, or RN
  ------ inclusion threshold ------
      0.015   15.6   0.2      0.031   14.6   0.2    1.5  1  zf-CCCH_7      Chromatin remodeling factor Mit1 C-terminal Zn
       0.13   12.2   0.0        0.3   11.0   0.0    1.6  1  RRM_occluded   Occluded RNA-recognition motif
       0.71   10.3   4.5       0.28   11.6   1.4    2.0  2  ribosomal_L24  Ribosomal proteins 50S L24/mitochondrial 39S L


Domain annotation for each model (and alignments):
>> eIF3g  Eukaryotic translation initiation factor 3 subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.4   2.4   8.2e-48   2.9e-44       2     125 .]      23     159 ..      22     159 .. 0.86

  Alignments for each domain:
  == domain 1  score: 150.4 bits;  conditional E-value: 8.2e-48
       eIF3g   2 keiiededgiktvieykinedgkkvkvtrkiretkvkekvskavaeRkkwaKfGdekgdkpgpnsatttvgeevelkl............eeekee... 85 
                 +++++++dg+ktvi+y++n+dgkkvkvtrkir+t++ke+v++avaeR++waKfG ekg++pgp+ +tt+vge+++++             e    +   
  KKY20947.1  23 QTVTTNKDGTKTVISYRFNDDGKKVKVTRKIRTTIHKERVNPAVAERRQWAKFGLEKGHPPGPSFDTTSVGENMQFRPsvnwkqqikedaE----Kaan 117
                 78999*****************************************************************************999865431....1345 PP

       eIF3g  86 .....ekeeeekekaklkkkekklvkCriCkgdHfTskCPykdtl 125
                      e+  e++ k++lk   +k vkCriC+g+HfT++CPykdt+
  KKY20947.1 118 gggggEEGGEKSLKDQLK---DKKVKCRICNGEHFTARCPYKDTM 159
                 655544445555555555...456*******************97 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1       3.7   1.3e+04      49      56 ..     109     116 ..     109     118 .. 0.81
   2 !   55.3   0.0   1.2e-18   4.1e-15       1      63 [.     220     283 ..     220     290 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3.7
                 HHHHHHHH CS
       RRM_1  49 kedAekAl 56 
                 kedAekA 
  KKY20947.1 109 KEDAEKAA 116
                 69999996 PP

  == domain 2  score: 55.3 bits;  conditional E-value: 1.2e-18
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkk 63 
                 l V+n+++ + e+eL++lF+ fG+++++ l +d etg +kgfaf+ F ++ dA++A e++++  
  KKY20947.1 220 LRVTNVSEMAEESELRDLFERFGRVTRVFLAKDrETGLAKGFAFISFVDRADAARACEKMDEFG 283
                 679*********************************************************9865 PP

>> zf-CCCH_7  Chromatin remodeling factor Mit1 C-terminal Zn finger 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2   8.8e-06     0.031      63      86 ..     132     155 ..     127     158 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 8.8e-06
                 TT--SSS-B-TTT--B--TT--GG CS
   zf-CCCH_7  63 lysvddsvrCrcCgieHvPgrCpL 86 
                     d+ v+Cr+C+ eH  +rCp 
  KKY20947.1 132 DQLKDKKVKCRICNGEHFTARCPY 155
                 566799****************96 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.5e-05       0.3       3      60 ..     219     281 ..     217     292 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.5e-05
  RRM_occluded   3 tisllplsDtvnkariralveekegeikkivLvpdheG......AivefkdekiagkasLaLdg 60 
                   t+ + ++s+   ++++r+l+e   g++++++L  d e       A++ f d+++a++a  ++d 
    KKY20947.1 219 TLRVTNVSEMAEESELRDLFERF-GRVTRVFLAKDRETglakgfAFISFVDRADAARACEKMDE 281
                   788999*****************.***********87545555799***********9766665 PP

>> ribosomal_L24  Ribosomal proteins 50S L24/mitochondrial 39S L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.4   7.9e-05      0.28      36      60 ..      28      52 ..      24      57 .. 0.87
   2 ?   -2.6   0.1       2.2   7.8e+03      51      58 ..     136     144 ..     129     148 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.9e-05
  ribosomal_L24 36 pkcgkptrvgfrlkedgkkvRvskk 60
                   +k+g +t +++r+++dgkkv+v++k
     KKY20947.1 28 NKDGTKTVISYRFNDDGKKVKVTRK 52
                   68999********9********998 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.2
  ribosomal_L24  51 dgk.kvRvs 58 
                    d+k k R++
     KKY20947.1 136 DKKvKCRIC 144
                    333356888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2002.07
//
Query:       KKY20948.1  [L=412]
Description: putative ndt80 like dna-binding family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-38  132.9   0.0    2.3e-38  132.3   0.0    1.3  1  NDT80_PhoG  NDT80 / PhoG like DNA-binding  family


Domain annotation for each model (and alignments):
>> NDT80_PhoG  NDT80 / PhoG like DNA-binding  family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.3   0.0   1.3e-42   2.3e-38       1     185 [.      58     258 ..      58     259 .. 0.87

  Alignments for each domain:
  == domain 1  score: 132.3 bits;  conditional E-value: 1.3e-42
  NDT80_PhoG   1 ewvcyrRNyfqvvasfeleglslekfvkhsftilenelesgeklpikyfalkikatknsed....dseielvqhtakrdkgpqfaPeivalvpkelpkh 95 
                 +w+cyrRNyf+v +sf l+  s ++ +        ++    +   ik+fa+ i +  + +     +++ elvqhtakrdk +q++P +v l p     h
  KKY20948.1  58 AWICYRRNYFSVQVSFALDPPSRDRLYVR------PNGPGTHAELIKGFAVAIAGKVQASSdgqlGEDRELVQHTAKRDKSKQKNPGKVLLSP----LH 146
                 5*****************88877777662......2345555667*********96654444889999********************99966....56 PP

  NDT80_PhoG  96 qlireasnvrnesklkkf.....................deikkvarfeRlqFksatannkrrkq.qrffkLvvkllaivekeeskgteikiaelespp 172
                    r+a   + +     f                     +++ + ++feR+qFk atann++r+  q+++++  +l+a v ++++++  ik+a+++spp
  KKY20948.1 147 MSRRNALSLTTSMAHAPFggptilastpyswdhqyiapeASAPTSHTFERIQFKRATANNGKRRAqQQYYHVIAELYADVGNAYENHRWIKVAMAQSPP 245
                 6666666666665555559999*****************9********************988877********************************* PP

  NDT80_PhoG 173 lIVRGrsPsnyes 185
                 ++VRGrsP++y +
  KKY20948.1 246 VVVRGRSPGHYRD 258
                 ***********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.54
# Mc/sec: 2305.12
//
Query:       KKY20949.1  [L=302]
Description: putative aig2 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-05   25.9   0.0    8.3e-05   23.2   0.0    2.1  2  GGACT     Gamma-glutamyl cyclotransferase, AIG2-like
     0.0038   17.6   0.0       0.81   10.1   0.0    3.1  3  AIG2_2    AIG2-like family


Domain annotation for each model (and alignments):
>> GGACT  Gamma-glutamyl cyclotransferase, AIG2-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   9.2e-09   8.3e-05       1      89 [.       6      92 ..       6     127 .. 0.77
   2 ?   -0.2   0.0      0.16   1.5e+03      41      63 ..     214     237 ..     187     246 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 9.2e-09
                EEESSTTSTTSCCCHHHHCSECEEEEEEEECCTBEEEE.ETTTEEEETTSSE...EEEEEEEE-HHHHHHHHHCT.TTTTSEEEEEEEEEC CS
       GGACT  1 vFvYGtLkrgepnhqrlllgarflesgpatlkgyrlydlggkypalvpgdge..kVkGelyevddeelarLDelEpeepseYereevkvev 89
                +F+YG+    +   + + +  + +  g+ +l gy     ++++ ++v++ ++   V G  y +++ ++ rLD+ E + p+ Y+++ ++v++
  KKY20949.1  6 YFAYGSNL--SLTQMGKRCP-ESRLIGRGRLYGYVWQINERGFANVVKSVDStkFVDGLCYLLNPIDVGRLDRSE-GVPTAYQKRLLQVSL 92
                69*****9..4444444434.4444555558887655544699****55444569********************.9********999988 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.16
                 TTTEEEETTSSE..EEEEEEEE-H CS
       GGACT  41 gkypalvpgdge.kVkGelyevdd 63 
                 +  p+l +g+g   VkG+l + ++
  KKY20949.1 214 SATPYLQRGKGVrPVKGQLTKTTK 237
                 36799999999999**99998766 PP

>> AIG2_2  AIG2-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.075   6.7e+02       1      15 [.      32      46 ..      32      53 .. 0.84
   2 !   10.1   0.0   9.1e-05      0.81       4      42 ..      60      97 ..      57     135 .. 0.82
   3 ?    2.7   0.0     0.019   1.7e+02      21      72 ..     146     200 ..     135     203 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.075
      AIG2_2  1 eVfGvlweidlenlk 15
                +++G +w+i+++ + 
  KKY20949.1 32 RLYGYVWQINERGFA 46
                589*******98766 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 9.1e-05
      AIG2_2  4 GvlweidlenlkdLDkqEgvedgiyrpievrVstatgee 42
                G  + +++ ++ +LD+ Egv++  y++  ++Vs +  + 
  KKY20949.1 60 GLCYLLNPIDVGRLDRSEGVPT-AYQKRLLQVSLHGVQP 97
                78899999**************.9***999999865554 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.019
      AIG2_2  21 EgvedgiyrpievrVst..atgeevlaraYvlsnqpe.tkPsetYlkvlvkGAee 72 
                  +v ++ y    ++ +t  + g+  la +Y  +++++ + P ++Y++ +  G ee
  KKY20949.1 146 DKVVTRCYSDSALQGNTgrSGGQPALALVYLSEKNRKpGYPWDEYIDRMRLGIEE 200
                 5677778888888777775677899*****9998766699*****9988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1987.39
//
Query:       KKY20950.1  [L=285]
Description: hypothetical protein UCRPC4_g03957 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-52  178.9   0.2    1.4e-52  178.7   0.2    1.0  1  HRI1      Protein HRI1


Domain annotation for each model (and alignments):
>> HRI1  Protein HRI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.7   0.2   7.7e-57   1.4e-52       1     230 []      44     282 ..      44     282 .. 0.89

  Alignments for each domain:
  == domain 1  score: 178.7 bits;  conditional E-value: 7.7e-57
                 EEEEEEEEESSS--.B..--B--EEE-T--EEEEEEBSS--CC.CTTS-..EEEEEEE-GGGEEEE.......-.SSE.E.EEEE--SEEHHH...... CS
        HRI1   1 siskRksirwppeepsEptsTlvLtspsgrfVDiRilkepesekeeepeplleWafaGtststset.......t.egelvshstfthwiDsrveeaaaD 91 
                 sis+Rk i+ +   ++E++s+lvLt+psgr+VDiR+ ++   +++  p  +  WafaG+st                e+++h +++h iDs+ +  a D
  KKY20950.1  44 SISTRKGIERGFFGAKEDSSVLVLTAPSGRYVDIRFALTG--DDPCSPSNPAFWAFAGISTMEISGakkdgriDgGFECTAHGKWEHPIDSSRDFDAID 140
                 69***********************************996..4444444339********9877778999*994467899*************889*** PP

                 .....HCTTS-EEEEEEE-.TT-S--EEEEEEEEEB-TTSSS-BB-----EEEEEE-S.T.......EEEEEEETTEEEEEEETT..GGGEEEEEEEE. CS
        HRI1  92 eGdmyelpsgltlEkGemvnpatgkveeYeElWrdldpakteeeeevkvrcvvleledse....dderGlvvrvGqycqGilrkg..ekeltveRwew. 183
                 eGdm+ l++g+++E G+  np+tgkv+ Y+E+W + +p++ +      ++cvv+e++++     +d +G++vr+G+y+qGi++++  + e++veRw   
  KKY20950.1 141 EGDMFLLQNGDVMEIGTTENPETGKVQLYKEYWTSPSPKPRT-----MRPCVVAEIKGTIagagADGKGMIVRIGDYVQGIFQTEeqSGEFWVERWLRs 234
                 **********************************99998777.....79********7657655445***************99866678******996 PP

                 .-TTS-.EEEEEEESTGGGS.--...--TT--TT-EEEETTEEEEEEE CS
        HRI1 184 .eedegewkrtvriGeadkflPcvaleaeelevgdtvevgglkWevvE 230
                  ++++++w ++ r +++++ +P+++++ e +++gd++++++++WevvE
  KKY20950.1 235 tDRQAEGWIKDDRSNTTEELIPIIWATGEMRKLGDKITCKERNWEVVE 282
                 666778899999999877778**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.51
# Mc/sec: 1672.62
//
Query:       KKY20977.1  [L=312]
Description: putative 3-oxo-5-alpha-steroid 4-dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-10   39.3   0.1    6.1e-10   39.3   0.1    1.7  2  Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase


Domain annotation for each model (and alignments):
>> Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1      0.32   5.8e+03      33      50 ..     152     169 ..     127     179 .. 0.57
   2 !   39.3   0.1   3.4e-14   6.1e-10      40     150 .]     200     312 .]     182     312 .] 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.32
  Steroid_dh  33 aedylkkdrlllgivlfv 50 
                  ++ ++   +++gi+ ++
  KKY20977.1 152 SKSTMNMAIFSIGIAYYA 169
                 344444455555555554 PP

  == domain 2  score: 39.3 bits;  conditional E-value: 3.4e-14
  Steroid_dh  40 drlllgivlfvlgmliniksdiiLrelrkegetkykiprgglFelvsapnyfgEilewigyalvtk......slaalaFalftvlnltvraaahhkwyk 132
                  r ++gi lf+l+   +  +++ L +l+     ky  p+   F  v  p+y+ E+l ++++a++        +   +a ++f+++nl+  a ++  wyk
  KKY20977.1 200 IRSIIGIPLFLLASGLQYDCHYYLWSLK-----KYTFPTHPAFSKVLNPHYLAEVLIYVSLAILGApkgqilNRSLVAGTFFVLANLAAEADNSKTWYK 293
                 6789*********************665.....79***************************9865111111333456678****************** PP

  Steroid_dh 133 kkf.ekYpksRkiliPfvf 150
                 +kf e+  + +  +iP+++
  KKY20977.1 294 QKFgEDKVQGKYRIIPYIW 312
                 ***8888888889****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.49
# Mc/sec: 1899.88
//
Query:       KKY20978.1  [L=122]
Description: putative peptidyl-prolyl cis-trans isomerase pin4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-14   52.9   0.0    1.1e-13   51.7   0.0    1.6  1  Rotamase_3  PPIC-type PPIASE domain
      1e-12   48.8   0.0    1.5e-12   48.3   0.0    1.3  1  Rotamase    PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   1.2e-17   1.1e-13      13     115 ..      27     121 ..      20     122 .] 0.80

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 1.2e-17
  Rotamase_3  13 kd.svkvshIlistkgkesrseeeakakadsllaalkegadFaalAkeySdDpaskenGGelgwftkgqmvkeFedavfslkkgeiskv....vktdfG 106
                 +  s++v+hIl +             +k ++ l++l++ ++F ++A+e+S+D+a   +GG+lgw  +g + ++Fe+++ +l++ ++ ++    vkt  G
  KKY20978.1  27 PAtSINVRHILCEK-----------FSKKEEALEKLRNSGKFDDVAREFSEDKA--RQGGSLGWKVRGSLEPAFEKVAYELDVSTTNSPkigeVKTGHG 112
                 44488888888864...........3456677899******************7..9********************9988665543222244****** PP

  Rotamase_3 107 yHiikvtdk 115
                 yHii v  +
  KKY20978.1 113 YHIIMVEGR 121
                 ****99765 PP

>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   1.6e-16   1.5e-12      23      96 ..      45     119 ..      35     120 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 1.6e-16
                 HHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-CT-B-S-E....EETTEEEEEEEE CS
    Rotamase  23 eeileqlksgedtFeelArkySddknsakngGdlgwvekgqlppefekaafslkkGeisepv....etkfGfhiikle 96 
                 ee le+l++  + F+++Ar++S+d  +a++gG+lgw  +g l+p+fek+a++l+      p     +t +G+hii++e
  KKY20978.1  45 EEALEKLRNSGK-FDDVAREFSED--KARQGGSLGWKVRGSLEPAFEKVAYELDVSTTNSPKigevKTGHGYHIIMVE 119
                 788999999999.*********54..57**************************988877744555*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 831.03
//
Query:       KKY20979.1  [L=339]
Description: hypothetical protein UCRPC4_g03896 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 2192.77
//
Query:       KKY20980.1  [L=338]
Description: putative s-adenosylmethionine-dependent methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-12   45.5   0.0    1.5e-11   44.3   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
      5e-06   26.4   0.0     0.0013   18.6   0.0    2.3  2  Methyltransf_23  Methyltransferase domain
    5.1e-06   27.1   1.9    1.9e-05   25.3   0.0    2.6  3  Methyltransf_12  Methyltransferase domain
    7.3e-06   26.6   0.1    6.3e-05   23.6   0.0    2.4  3  Methyltransf_25  Methyltransferase domain
    0.00012   22.6   0.1      0.027   15.1   0.0    3.0  4  Methyltransf_11  Methyltransferase domain
     0.0024   17.9   0.0      0.004   17.2   0.0    1.4  1  Methyltransf_32  Methyltransferase domain
  ------ inclusion threshold ------
      0.041   13.5   0.0      0.062   12.9   0.0    1.2  1  MetW             Methionine biosynthesis protein MetW
      0.084   13.3   5.8       0.14   12.5   3.2    2.1  2  CENP-B_dimeris   Centromere protein B dimerisation domain
        7.1    5.9   7.2         11    5.2   7.2    1.2  1  NOA36            NOA36 protein


Domain annotation for each model (and alignments):
>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   7.5e-15   1.5e-11       6     117 ..     113     284 ..     109     300 .. 0.88

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 7.5e-15
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgp..kaevvGiDiseeaielArenaqk..lgldnveFeqgdieeleklled......................e 73 
                      ++lDlG+G+G l+f l  e g+  + ++ GiD+s  +iel++   ++   g +++eF ++di + e  + +                       
       KKY20980.1 113 SILDLGTGNGSLLFLLRTE-GEfiGNRMCGIDYSDSSIELSKRLGKEvgDGCEEIEFYRCDILKEED-WRKaewwpkspddtralhqggkdsiT 204
                      69***************64.4445677****************6655227889***********664.66677999**************9999 PP

  Methyltransf_31  74 kfDlilsnevlnaladpdkile...................................eiervlkpggilliedpr.llae 117
                        D++l++++++a++ +++ +e                                    + r l+pgg+lli++++ +++e
       KKY20980.1 205 GWDIVLDKGTFDAISLSAEEIEieeerdnnspesldhssstipppqrrrricelyprAAARMLNPGGYLLITSCNwTEDE 284
                      99*********99999999999999**************************************************44444 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   6.6e-07    0.0013      21      88 ..     109     220 ..      83     248 .. 0.72
   2 !    5.7   0.0    0.0061        12     103     120 ..     261     278 ..     250     297 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 6.6e-07
  Methyltransf_23  21 raggrvLdiGcGtGillevlrengf....svtgvDlspeaveiae...........kakkaqkdqfdeqeaae..................... 78 
                       +  ++Ld+G+G G+ll +lr++g      ++g+D s+  +e+ +           ++ +++ d   e+++++                     
       KKY20980.1 109 SPLPSILDLGTGNGSLLFLLRTEGEfignRMCGIDYSDSSIELSKrlgkevgdgceEIEFYRCDILKEEDWRKaewwpkspddtralhqggkds 202
                      33449***************9997557879*********9999989999999999844444444444444444444445544444444444445 PP

  Methyltransf_23  79 ........pqgkfdlIvl 88 
                              ++g+fd I+l
       KKY20980.1 203 itgwdivlDKGTFDAISL 220
                      555555555668888876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0061
  Methyltransf_23 103 rqiatllkpgGylllsep 120
                      r +a++l+pgGyll++  
       KKY20980.1 261 RAAARMLNPGGYLLITSC 278
                      56899*********9874 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.6       1.4   2.8e+03      22      63 ..      25      66 ..      21      82 .. 0.72
   2 !   25.3   0.0   9.6e-09   1.9e-05       1      79 [.     115     218 ..     115     230 .. 0.87
   3 ?   -1.3   0.0       1.9   3.7e+03      88      99 .]     262     273 ..     259     273 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.4
  Methyltransf_12 22 eytgvDispsaiedakeklakrennnnnnvelealdlldldg 63
                     +y+ +D+s    + a + + k ++ + n  + +++d++d++ 
       KKY20980.1 25 NYYNTDLSNLKRPVADNNTVKSRKGDGNDDDDDEEDDDDKAN 66
                     577788888888777777777777676666666666655544 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 9.6e-09
  Methyltransf_12   1 LeiGcGtGsllrallekl..pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg........................ssfD 68 
                      L++G+G+Gsll+ l+ +   ++ + +g+D+s s+i   +++l k+ ++ ++++e+  +d+l++++                           +D
       KKY20980.1 115 LDLGTGNGSLLFLLRTEGefIGNRMCGIDYSDSSI-ELSKRLGKEVGDGCEEIEFYRCDILKEEDWrkaewwpkspddtralhqggkdsiTGWD 207
                      8***************9999***************.***********************98776558888888888888888888888887777 PP

  Methyltransf_12  69 lvvasnvlhhl 79 
                      +v+  +++ ++
       KKY20980.1 208 IVLDKGTFDAI 218
                      77777777665 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.9
  Methyltransf_12  88 nirklLkpgGrl 99 
                       ++++L+pgG+l
       KKY20980.1 262 AAARMLNPGGYL 273
                      5789******87 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   3.2e-08   6.3e-05       1      56 [.     114     174 ..     114     183 .. 0.87
   2 ?   -1.5   0.0       2.2   4.4e+03      14      29 ..     194     208 ..     190     227 .. 0.64
   3 ?   -1.5   0.0       2.2   4.3e+03      87      97 .]     261     271 ..     245     271 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 3.2e-08
                      EEEET-TTSHHHHHHHCTS...TSSEEEEEESSHHHHHHHHHHHHH..TTT.TEEEEESBCC CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl...gkakvtgvDiseemleaareraee..egl.nvefvqgdae 56 
                      +LdlG+G+G l++ l +++   g  ++ g+D+s++ +e  ++  +e  +g+ ++ef+++d+ 
       KKY20980.1 114 ILDLGTGNGSLLFLLRTEGefiG-NRMCGIDYSDSSIELSKRLGKEvgDGCeEIEFYRCDIL 174
                      8*****************85555.9****************99998777779*******994 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.2
                      HHHCTSTSSEEEEEES CS
  Methyltransf_25  14 alakrlgkakvtgvDi 29 
                      al++  gk ++tg Di
       KKY20980.1 194 ALHQG-GKDSITGWDI 208
                      45544.4677777776 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.2
                      HHHHHHEEEEE CS
  Methyltransf_25  87 keiarvLkpgG 97 
                      + +ar+L+pgG
       KKY20980.1 261 RAAARMLNPGG 271
                      6789******9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.2   6.4e+03      19      41 ..      24      46 ..      15      53 .. 0.73
   2 !   15.1   0.0   1.3e-05     0.027       1      52 [.     115     173 ..     115     178 .. 0.87
   3 ?   -3.4   0.0       8.2   1.6e+04      58      68 ..     211     221 ..     207     237 .. 0.67
   4 ?    4.0   0.0      0.04        81      82      96 .]     261     275 ..     257     275 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.2
                     SEEEEEES-HHHHHHHHHHCCHH CS
  Methyltransf_11 19 arvvgvDlskemlklakekasee 41
                      +++++Dls+  + +a ++++++
       KKY20980.1 24 DNYYNTDLSNLKRPVADNNTVKS 46
                     67899999988888887777665 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.3e-05
                      EEET-TTSHHHHHHHHTT....SEEEEEES-HHHHHHHHHHCCHHT-...EEEETTEEC CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg....arvvgvDlskemlklakekaseegl...kvefvvada 52 
                      Ld+G+G+G+l+  l   g     r  g+D+s+  ++l+k+ ++e g    ++ef ++d+
       KKY20980.1 115 LDLGTGNGSLLFLLRTEGefigNRMCGIDYSDSSIELSKRLGKEVGDgceEIEFYRCDI 173
                      8**************8878889*****************99999887777666666665 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 8.2
                      -TT-EEEEEEE CS
  Methyltransf_11  58 ednsfDlvvss 68 
                       +++fD++ +s
       KKY20980.1 211 DKGTFDAISLS 221
                      45677776554 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.04
                      HHHHHHEEEEEEEEE CS
  Methyltransf_11  82 keiaRvLkpgGllvi 96 
                      + +aR+L pgG+l+i
       KKY20980.1 261 RAAARMLNPGGYLLI 275
                      5789********986 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     2e-06     0.004      26      89 ..     111     173 ..      99     241 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2e-06
  Methyltransf_32  26 altvvDvGaGkgYLsfvlalkeke.yklkvvgidakeelvekaekraeklgkkfnkrlsfaelsi 89 
                        +++D+G G+g L f l   e e  + +++gid +++ +e ++++ +++g    ++++f   +i
       KKY20980.1 111 LPSILDLGTGNGSLLFLLRT-EGEfIGNRMCGIDYSDSSIELSKRLGKEVGDGC-EEIEFYRCDI 173
                      5689****************.44449*********************9999666.6676666555 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.1e-05     0.062      16      56 ..     113     156 ..     106     171 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.1e-05
        MetW  16 rvldlGcGdGellellkeekqvdgr...GleldeegvaecvakG 56 
                  +ldlG+G+G+ll ll+ e +  g+   G++ +++++  +   G
  KKY20980.1 113 SILDLGTGNGSLLFLLRTEGEFIGNrmcGIDYSDSSIELSKRLG 156
                 69***************998876643448888888887665555 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   3.2   7.2e-05      0.14      19      62 ..      50      93 ..      37     100 .. 0.71
   2 ?    0.7   0.0      0.35   6.9e+02      10      44 ..     215     249 ..     208     255 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.2e-05
  CENP-B_dimeris 19 eeeeeeedeededeeddedddevpvpsfgeamayfamvkrylts 62
                    + +++++deed+d++ ++  d   +ps+   ++    +  ylts
      KKY20980.1 50 DGNDDDDDEEDDDDKANQSIDPSELPSWFSDVSAPEKILSYLTS 93
                    34567777788888888888888999987777777777788886 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.35
  CENP-B_dimeris  10 edsesesdeeeeeeeedeededeeddedddevpvp 44 
                      d+ s s ee e eee +++  e  d  +  +p p
      KKY20980.1 215 FDAISLSAEEIEIEEERDNNSPESLDHSSSTIPPP 249
                     46777888888888888888888777777777766 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   7.2    0.0056        11     257     295 ..      24      66 ..       8      75 .. 0.39

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0056
       NOA36 257 daylkalasg....ddeddegdedddddddeedddeeeddede 295
                 d+y+++  s+      ++++ ++ + d +d++dd+e++dd+ +
  KKY20980.1  24 DNYYNTDLSNlkrpVADNNTVKSRKGDGNDDDDDEEDDDDKAN 66 
                 3333333333333222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 2113.75
//
Query:       KKY20981.1  [L=486]
Description: putative nicotinamide n-methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-08   34.9   0.0    8.9e-08   32.1   0.0    2.1  1  Methyltransf_16  Lysine methyltransferase
  ------ inclusion threshold ------
       0.26   11.0   1.8        8.7    6.0   0.5    2.3  2  TCL1_MTCP1       TCL1/MTCP1 family


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   9.9e-12   8.9e-08      16     148 ..      98     256 ..      89     272 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 9.9e-12
  Methyltransf_16  16 sigrkvWdaavvlvkylekklake........lganelsklsvlELGsGtGlvGlavaellpeakviltDleellellk....knielnkn... 94 
                        ++ +W aa v++  +e+ + ++        ++  +++++++lE+G+Gt l  +++a++    +v++tD +    l +    +n++   n   
       KKY20981.1  98 LFAHYLWSAAAVAAAGIEQGSLNTrkrndsgrKNWWDFKGVRALEVGAGTALPSITAALS-HAESVYITDHPSSPALTTgsilSNVKR--Nlfs 188
                      46889**************988888899977666668999*****************999.8899*****998555544111155554..1335 PP

  Methyltransf_16  95 .............alkskvkvevLdWgeeleed.llekeevDlilaaDcvYledslelLvkvLkellk 148
                                    +++kv++ + +Wg+   +     k+++D i++aDc++l +  + L++++ + lk
       KKY20981.1 189 tlraeqpdqtsqpRTETKVNILPHSWGQLSAPRaQALKSSFDKIIVADCMWLSSQHDNLITSILHFLK 256
                      5566677777766677788888889**9655441445778*******************999887765 PP

>> TCL1_MTCP1  TCL1/MTCP1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0    0.0053        48      60      99 ..     194     233 ..     176     248 .. 0.85
   2 ?    6.0   0.5   0.00097       8.7      28      59 ..     385     416 ..     375     453 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0053
                 ----S---CCCC-S-SS-SEEEE-TTSSEEETTS-EEEEE CS
  TCL1_MTCP1  60 vllqeplspsqltvseLPlvWqLypgnkYrasdssfWriv 99 
                  + q++ + ++ +v+ LP  W   +  + +a +ssf +i+
  KKY20981.1 194 QPDQTSQPRTETKVNILPHSWGQLSAPRAQALKSSFDKII 233
                 46677888889999*******99999999*****999987 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.00097
                 TT--EEEEEEEE-SSS.....-E..EEEEE-- CS
  TCL1_MTCP1  28 EkgrtWltvvvetsessstsetsvtVhlrqma 59 
                 E+ r+W++v++ t+++++  + +v   + +++
  KKY20981.1 385 EQARKWVVVAILTKPEENNAHSNVHKEINNQS 416
                 899************96555555333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 3213.33
//
Query:       KKY20982.1  [L=688]
Description: putative ferric reductase like transmembrane component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-19   69.9   7.1    4.6e-19   68.8   7.1    1.6  1  Ferric_reduct  Ferric reductase like transmembrane component
    3.2e-14   53.3   0.0    5.7e-14   52.5   0.0    1.4  1  NAD_binding_6  Ferric reductase NAD binding domain
    2.2e-06   27.7   0.0    5.3e-06   26.5   0.0    1.7  1  FAD_binding_8  FAD-binding domain


Domain annotation for each model (and alignments):
>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   7.1   7.7e-23   4.6e-19       1     122 [.     124     241 ..     124     244 .. 0.94

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 7.7e-23
  Ferric_reduct   1 lGiaalillplalllalRn..nflepltglsldklllfHkwlgvlafllallHvilyllnflrfsaldeerlldsllkkpynllGvlalllliila 94 
                    lG++a+++lpl +lla+++  ++++ +tgl++++ l +H+++g+++ ++ l+H++lyl +f +       +ll+++l + +++lG+l+++++ ila
     KKY20982.1 124 LGHIAVTQLPLHYLLAIKSplSPVQVITGLTYETILPYHRLFGRIIHVFFLAHAALYLNFFSQ------ANLLSKRLGDRDVRLGLLSIVMIDILA 213
                    699*************998778888*********************************99997......799************************ PP

  Ferric_reduct  95 itSlkfirrrlsyelFyylHhllyvayl 122
                    itS+++ir+  +   Fy +H+l+ va++
     KKY20982.1 214 ITSIPPIRKFAYHTAFYRTHILISVAIV 241
                    ********7777889*******999987 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   9.5e-18   5.7e-14       3     155 ..     410     667 ..     408     668 .. 0.79

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 9.5e-18
                    xxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   3 nvllvagGiGitpfisilkdllkksk..................kealktkkikliwvvressslewfkdvLneleeeksegnieihiYlTseyea 80 
                     vll+agG+G+t++++i   ll+ ++                      + +ki + w+vr + + +w  + Ln  +  + + +i+ +iY+Ts++ +
     KKY20982.1 410 DVLLIAGGVGATFTLPIYVALLQGIAkrkqnpssptvttkngsiVPLARERKIIFTWIVRTQAESQWGIETLNRYKLSNLSLEIDARIYITSSSPS 505
                    69********************9999999***********999988999********************9**86665555568***********99 PP

                    xxxxxxxxxxxxxxxxxxxx............................................................................ RF
  NAD_binding_6  81 edasdqlissiegenseslk............................................................................ 100
                    ++ + +   si+   ++s++                                                                            
     KKY20982.1 506 TSSTFSTPPSIDISSAKSTSflplnkipisqdfpapgisvtnslnhlhnppsstsssnpspsstltppsskstsptphplhqlhlpsqpppsppst 601
                    444444444433333333334556677777778888888888888888888888888888888888888777788888888888888888888877 PP

                    ......xxxxxxxxxx............xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 101 ......qgvdavsgtr............nvkihfg.RPnlkevlkdiaskhknssvgvfvCGppklvkevkklv 155
                          +        +             +++  + RPn+  +++d+++ +k s+  ++vCGpp+l  ev+k+v
     KKY20982.1 602 pqpqnpT--------SssspappspsylTIQTLPSqRPNIPLLIHDFMTPSKWSRKEILVCGPPALKAEVRKQV 667
                    7664331........133456677888856666666***********************************987 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   8.9e-10   5.3e-06      27     109 .]     310     397 ..     277     397 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 8.9e-10
  FAD_binding_8  27 slkykaGqyvyinipslsklfwqsHPFtiasape...........ddklslvikvksg.ltkklakkllssskkelenkkaklkvlidGPYGaps 109
                    +  +++Gq+vyi+ +   kl  +  PFti+s p              k++lv+++ +g +t  lakk l+          +++++l +GPYG++s
     KKY20982.1 310 FSTWTPGQHVYIKQSMSPKL--PRSPFTIVSLPPtsdrdtddeteSGKIELVLRNLNGpMTGWLAKKPLET-----GRTSRNVEILFEGPYGESS 397
                    468**********8776656..9********99888888865555568******98875899999999998.....588999**********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.49
# Mc/sec: 4239.73
//
Query:       KKY20983.1  [L=614]
Description: putative glycosyl transferase family 8 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-18   67.0   0.1    1.1e-17   64.5   0.1    2.0  1  Glyco_transf_8  Glycosyl transferase family 8
  ------ inclusion threshold ------
      0.029   14.9   0.1      0.082   13.5   0.1    1.9  1  NumbF           NUMB domain


Domain annotation for each model (and alignments):
>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.1   1.2e-21   1.1e-17      89     252 ..       8     141 ..       3     143 .. 0.94

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 1.2e-21
  Glyco_transf_8  89 lnylRlylpelfpkldkilylDaDvvvqgdlseLwdldlkgkvlaavedkrfkkylnksepliaenfkpeacyFnaGvllfdldewrkenitetl 183
                      ++ ++ l+    ++ ki+y+DaDvv  +  +eL+ ld +   +                  +a++++ +++ Fn+Gv+++ ++   + ++   +
      KKY20983.1   8 STFTKIELWRQ-TQYGKIVYIDADVVALRAPKELLTLDAD---F------------------AAAPDIGWPDCFNSGVMVLTPNLGDYYSLLALA 80 
                     58999*****9.****************************...4..................455559*****************9999999999 PP

  Glyco_transf_8 184 ikwlnlnekrtllklgdqdilnivfkgkvkeldkkynvlglgyeqskkskkeitenaaviHyiGpaKPW 252
                     +  ++ +++       dq +ln+ f+ ++ +l+++yn++++g++q+ +++ +++ ++++iH+iGp KPW
      KKY20983.1  81 QRGISFDGA-------DQGLLNMHFR-EWERLSFTYNCTPSGNYQYVPAYRHFQSSINLIHFIGPDKPW 141
                     999999998.......*********6.7***************************************** PP

>> NumbF  NUMB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   9.1e-06     0.082       2      58 ..     415     476 ..     414     511 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.1e-06
       NumbF   2 fAieRrhAtlemLqRqgSfRgfsklsqasPFKRqlSLrlneLPStleRqrslsles.........l 58 
                 +Ai+R + + + + Rq S     ++ + sP +R+ SL l + P  leR +   +++          
  KKY20983.1 415 AAIQRTRQPKTHVPRQPSGD---HILSPSPQRRKSSLILTDFPTELERPSLP-VTPapirkgsgfW 476
                 69****************97...89999********************6544.3333555555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.51
# Mc/sec: 3620.52
//
Query:       KKY20984.1  [L=327]
Description: putative deoxyribose-phosphate aldolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-17   63.8   0.3    4.7e-17   62.4   0.3    1.6  1  DeoC          DeoC/LacD family aldolase
    0.00091   18.5   0.5     0.0055   15.9   1.4    1.8  2  DHO_dh        Dihydroorotate dehydrogenase
  ------ inclusion threshold ------
      0.027   13.6   1.7      0.046   12.9   1.7    1.3  1  Glu_synthase  Conserved region in glutamate synthase


Domain annotation for each model (and alignments):
>> DeoC  DeoC/LacD family aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.3   7.9e-21   4.7e-17       5     228 ..      47     298 ..      43     302 .. 0.84

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 7.9e-21
                 EECCSHHHHHHHHCTSSHHHHHHHHHHHHHHGGGSSEEEEETTTHHHHHHCSCT............TSEEEEETECSSCCTTSTTEEEETTCHHHHHHH CS
        DeoC   5 avDqrvankddtasaqneqledlkalvkealtpgasavlldpgviasaskeyak............diallvkldkgtyllkskqrdvdevasveeaka 91 
                 ++D++ ++k+d+a        ++ +++++al+ +   v++   +i + +k+                ia ++++++gty +++k       a++ +a++
  KKY20984.1  47 YIDHT-LLKPDAAT------HQILEICDQALKHHFRTVCVREDRIERCRKHFRGthvgrpappglpAIAAVIGFPEGTYTTTTK------CAEAHAAVQ 132
                 67775.56777777......49************************99887665599***************************......********* PP

                 TT-SEEEEEEEEHTTTTCHHHHHHHHHHHHHHHHH.HHTEEEEEE.EEE-CTTBSSTT...................CHHHHHHHHHHHHTCCT-SEEE CS
        DeoC  92 lGAdavkvvvyyradgseeeqqklaeikrvkeach.eeglplile.lylrdeaikdek...................vdpdlvaeAarvsaelGaDiiK 169
                 +GA+++++v++y+ +++++ ++++ ++k+v+e+ +   +l + +  + l++++    +                   +  + +  ++ +s+ +GaD+iK
  KKY20984.1 133 QGATELDMVLNYELLKAGNYTEVYHDVKAVRETIDkPIQLSFSADnAPLYGSREMPTGsytqgagsitlkviletsqLTSQQIIAGSLISIRAGADFIK 231
                 **********************************966899999999999*99965554889****************99******************** PP

                 E--SSCC.B.HHHHHHHHHHHHHCHSST.........EEEEETTS.SHHHHHHHHHHHHHHHTH.CEEEE CS
        DeoC 170 vevpkevvnateedaevfkdvikaapvp.........gvvlsGGv.seedfletvedAvkeaga.sGvls 228
                 ++++  +  at ed++ +  v++   v+         +v+ sGG+ s  d l++++  ++++ga +Gv +
  KKY20984.1 232 TSTGFRGGGATVEDVQRMGAVAE---VEarsssrkrvKVKASGGIrSLDDCLKMINAGAERIGAsAGVTI 298
                 ****8888888888888876666...332245555444*******5555555555555545555445544 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.25   1.5e+03     169     203 ..      53      87 ..      50      98 .. 0.81
   2 !   15.9   1.4   9.2e-07    0.0055     217     271 ..     237     291 ..     198     305 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.25
                 E-SSSSHHHHHHHHHHHHHHTECEEEE...BSEE- CS
      DHO_dh 169 laPdltdeekkdiadvllelkldgiivtNttvqrl 203
                 l Pd +  ++ +i d++l++++  + v    ++r 
  KKY20984.1  53 LKPDAATHQILEICDQALKHHFRTVCVREDRIERC 87 
                 689999************99999998876666655 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 9.2e-07
                 SSEEEEEGGGHHHHHHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEE CS
      DHO_dh 217 ktGGlsGkalkdialkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvq 271
                 ++GG   + +++++     e ++  +k++++ ++GGi s +D l +i+aGA  + 
  KKY20984.1 237 RGGGATVEDVQRMGAVAEVEARSSSRKRVKVKASGGIRSLDDCLKMINAGAERIG 291
                 456666666666655555566777889************************7665 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.7   7.7e-06     0.046     223     304 ..     222     294 ..     198     300 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.7e-06
                   HHHTT-SEEEEE.-TT---SSEEHHHHHHB---HHHHHHHHHHHHHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SH CS
  Glu_synthase 223 vakanadiilid.GleGGTGAspkssikhaGlPlelalaevdqtlkeeglrdrvsliadGglktgadvvkalalGAdavgigt 304
                     +a+ad+i+ + G++GG GA+ + +        + a+aev+    ++  r+rv+++a+Gg+++ +d +k +  GA+ +g + 
    KKY20984.1 222 SIRAGADFIKTStGFRGG-GATVEDVQR------MGAVAEVEA---RSSSRKRVKVKASGGIRSLDDCLKMINAGAERIGASA 294
                   567888888876466666.666665543......346777765...5788***************************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2202.89
//
Query:       KKY20985.1  [L=491]
Description: putative alpha beta hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-14   53.3   0.0    6.7e-12   45.6   0.0    2.2  2  Abhydrolase_1  alpha/beta hydrolase fold
    1.3e-13   52.1   0.0    3.6e-12   47.3   0.0    2.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    1.9e-06   27.3   0.0      9e-06   25.1   0.0    1.9  2  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.011   15.5   0.0        1.7    8.4   0.0    2.3  2  Abhydrolase_2  Phospholipase/Carboxylesterase
      0.072   13.5   0.1        0.2   12.1   0.1    1.7  1  EHN            Epoxide hydrolase N terminus


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   1.9e-15   6.7e-12       1     118 [.      72     202 ..      72     232 .. 0.82
   2 !    5.8   0.0    0.0027       9.6     209     251 ..     386     430 ..     314     434 .. 0.79

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 1.9e-15
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB................CHHSHHHHHHHHHHH.HHHCTTSSEEEEEE CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacin...............ddygtasvaddldri.ldalgddkltlvGh 80 
                    p+++++hG+p+s  vw ++ +++++ +++ +++++Dl+G+g S+  p                   +dy+     d+ + +      + k+ +vGh
     KKY20985.1  72 PLIILIHGYPDSYSVW-QFVMQSTILRQESTIVAVDLPGFGGSDSFPPYSAtvilealsefiigmrEDYNVHYDTDSAKELtDTGMSQSKVFIVGH 166
                    789********88875.558*********************998777654469*****8888888888888777777778845556777778**** PP

                    THHHHHHHHHHHHHGGGEEEEEEESECSSCCHHHHHHH CS
  Abhydrolase_1  81 SmGGmialayaaeyperVkalvllgaidpaaslieaqr 118
                    ++G+ ++  +a+e+p+  ++++l+++  p + l +a+r
     KKY20985.1 167 DWGCVLSYRLASEAPSLADRFILTNG--PLPQLFQANR 202
                    **************************..7766666665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0027
                    HHHSEEEEEEETTCSSSCH.HHHHHHHHCHTS.EEEEEEETCSSS CS
  Abhydrolase_1 209 nvlaptlvisgtsDplvpp.kaledlaqllpk.krlvvisdagHl 251
                    + +ap+ +i+g++Dp+      l+ + + l k +++v ++ +gH+
     KKY20985.1 386 ALKAPATIIWGQKDPVLMQqFCLDGIGDYLAKgSQVVMLPRTGHW 430
                    4456************98855555555556666899999999998 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0     1e-15   3.6e-12       1     208 [.      74     430 ..      74     443 .. 0.46

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 1e-15
                    EEEE--GC.....GCHHHH...HHHHCCT.CEEEEE--TTS.TS-GGCS--HHH.C..........HHHHHHHCCTT................... CS
  Abhydrolase_6   1 vlllHGagssassWlvapL...aallaag.vhvlapDlpGh.Grsdpppldled.l..........adlaalldelaa.................. 62 
                    ++l+HG + s s+W+  ++     l+ +  +  +a+DlpG+ G+++ pp++ +  l          +          +                  
     KKY20985.1  74 IILIHGYPDSYSVWQ--FVmqsTILRQEStI--VAVDLPGFgGSDSFPPYSATViLealsefiigmR----------Edynvhydtdsakeltdtg 155
                    79************5..22333445555556..9*******66667777666442222222223330..........2444455555555677788 PP

                    ..TTSEEEEEETCHHHHHHHHHHCC....EE.EEES-........................................................... CS
  Abhydrolase_6  63 .gggpvvlvGHSlGGalalaaapla..lvvg.vlldp........................................................... 95 
                     +  +v++vGH++G++l+ ++a+ a  l  + +l ++                                                           
     KKY20985.1 156 mSQSKVFIVGHDWGCVLSYRLASEApsLADRfILTNGplpqlfqanrerttafavnmfraffnapiasrhcltkgfrcliplvrqvykigyffsfq 251
                    899999**************8888876444467777733333333333333333333333333333333333333333322222222222221111 PP

                    ...----TTTS----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHHCCCCHCHCCCGHH...................................... CS
  Abhydrolase_6  96 .pptalpagllaaalelllallallrllawlsreplprlfladedadaawrarlarla...................................... 152
                     p                                                       +                                      
     KKY20985.1 252 lP-------------------------------------------------------Sglvryllrggnrsflrgihqyatgennslldqntylag 292
                    10.......................................................111111111111222222222222222233333333333 PP

                    ................................................................................HHCCHHCHTTCCHHTT CS
  Abhydrolase_6 153 ................................................................................allaglgllpaaawad 168
                                                                                                     + a l+    +++++
     KKY20985.1 293 clgpssddckpqtagdgkqkpksypasvvqrvmqdncayeateyyrsgawsdpweksletiaalydieqsqggslssrrhSSGALLF---SEPYKG 385
                    333333444444444444444444444444444444444444444444444444444444444444444444433332222222222...223333 PP

                    -TTGC..EEECTT-C.......HHHHCHHCCCHSTTEEETCE...SSS- CS
  Abhydrolase_6 169 lpvpl..lvlggeDp.......lvprllerllaqagarlpvvlpgaGHl 208
                    ++ +   +++g +Dp       l    + ++la  g ++ v lp++GH+
     KKY20985.1 386 ALKAPatIIWGQKDPvlmqqfcLDG--IGDYLA-KGSQV-VMLPRTGHW 430
                    3333342243466667433333333..777777.88888.888888885 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   2.5e-09     9e-06       2     108 ..      69     191 ..      68     219 .. 0.86
   2 ?   -0.9   0.0      0.22   7.7e+02     188     205 ..     385     402 ..     377     406 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 2.5e-09
  Hydrolase_4   2 epkavvvlvHGlaehsgryaelae.aLaaqGfavyalDhrGhGrse...............gkrghvpsfddyvdDlaafvekvkeehpelplfllGh 83 
                  +pk +++l+HG+ ++++  + +++    +q+  ++a+D  G+G s+                    +++   +  D +++ e   +  +++++f++Gh
   KKY20985.1  69 PPKPLIILIHGYPDSYSVWQFVMQsTILRQESTIVAVDLPGFGGSDsfppysatvilealsEFIIGMREDYNVHYDTDSAKELTDTGMSQSKVFIVGH 166
                  7999*****************77626899**********************9999888876445567777778888888888888888888******* PP

  Hydrolase_4  84 SmGGliallyllrypdkvaglilsa 108
                   +G +++ +++ + p+  +++il++
   KKY20985.1 167 DWGCVLSYRLASEAPSLADRFILTN 191
                  ****************888***985 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.22
  Hydrolase_4 188 akitlPllllhGeaDkvv 205
                   ++++P  ++ G++D+v 
   KKY20985.1 385 GALKAPATIIWGQKDPVL 402
                  6799************96 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00047       1.7      10      44 ..      67     101 ..      62     106 .. 0.81
   2 ?    4.6   0.0    0.0068        24      98     148 ..     152     202 ..     145     218 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00047
                    SS---EEEEEE--TT--SHHHHHHHH.TT--TTEE CS
  Abhydrolase_2  10 kdkaqavviflHGlGdsghawaeaakteaalpnik 44 
                    + ++++++i++HG+ ds   w ++++ ++  ++ +
     KKY20985.1  67 SGPPKPLIILIHGYPDSYSVWQFVMQSTILRQEST 101
                    67899***************999988666555555 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0068
                    HHTT--GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGGTTT CS
  Abhydrolase_2  98 lkkgipssriiigGFSqGaalalylaltlpkklggivafsgalplsqkles 148
                     + g+ +s+++i+G   G++l+  la   p  + + +  +g lp+  + + 
     KKY20985.1 152 TDTGMSQSKVFIVGHDWGCVLSYRLASEAPSLADRFILTNGPLPQLFQANR 202
                    567899*******************************99999998766654 PP

>> EHN  Epoxide hydrolase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   5.5e-05       0.2      76     105 ..      53      84 ..      34      87 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.5e-05
         EHN  76 dgldihFihlrsakpd.aiP.llllhGWPgsf 105
                 +gl++h++  +++++    P ++l+hG+P+s 
  KKY20985.1  53 NGLRLHYVTNNPNNSGpPKPlIILIHGYPDSY 84 
                 689********86655446735799****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3213.95
//
Query:       KKY20986.1  [L=409]
Description: putative bag domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-14   54.3   0.3    2.2e-14   53.6   0.3    1.4  1  BAG        BAG domain
     0.0066   16.2   0.0      0.013   15.2   0.0    1.5  1  ubiquitin  Ubiquitin family
  ------ inclusion threshold ------
      0.091   12.8   0.7       0.19   11.8   0.7    1.4  1  DivIVA     DivIVA protein


Domain annotation for each model (and alignments):
>> BAG  BAG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.3   3.8e-18   2.2e-14       8      74 ..     331     403 ..     324     404 .. 0.94

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 3.8e-18
                 HHHH.HHHHHHHHHHH.......HHH..HHHHHHHHH.HHHHHTCEESTHHHHHHHHHHHHHHHHHHHHHHHH CS
         BAG   8 vetllepeveafektv.....kkekeylylsElLlkl.LlkLDsieiegdeeaRekRKeavkevqkllkklDs 74 
                 ++t++ p +e++++++      +e e+++l+E +l++ ++k D i+ egd++aR++RK + +e q++lk+lD+
  KKY20986.1 331 YTTQWRPLCEQYLSHPppdskTREFEHKRLTESVLQHiIMKADDIDMEGDQQARQERKVLLNEAQEILKRLDA 403
                 678999************99877*************************************************8 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.2e-06     0.013      35      70 ..     210     246 ..     194     248 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.2e-06
                 SGGGEEEEETTEEE-TTSBHGGH.TTSTTEEEEEEES CS
   ubiquitin  35 paeqqrLiysGkvLedertleey.giqdgstlhlvlr 70 
                  ++ +rL+y+G  L+d+++++   g+++ s +++v++
  KKY20986.1 210 DPSTLRLLYKGHHLKDDSKMAKAeGLKQHSEVVVVVS 246
                 56778*****************************997 PP

>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.7   3.2e-05      0.19      52      98 ..     352     398 ..     349     407 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.2e-05
                 CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  52 eeklkeykeleetLkktlvvaqetaeevkanakkeaeliikeAekka 98 
                 +++ ++ +  e+ L++ ++ a ++  e  ++a++e +++++eA++  
  KKY20986.1 352 TREFEHKRLTESVLQHIIMKADDIDMEGDQQARQERKVLLNEAQEIL 398
                 6778999999*********************************9855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 2887.33
//
Query:       KKY20987.1  [L=360]
Description: putative deoxyribose-phosphate aldolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.2e-101  338.6   0.0   3.8e-101  338.3   0.0    1.1  1  Methyltrn_RNA_3  Putative RNA methyltransferase


Domain annotation for each model (and alignments):
>> Methyltrn_RNA_3  Putative RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.3   0.0  2.1e-105  3.8e-101       1     285 [.      36     351 ..      36     352 .. 0.96

  Alignments for each domain:
  == domain 1  score: 338.3 bits;  conditional E-value: 2.1e-105
  Methyltrn_RNA_3   1 tvsiaiPssiisnaqsleqktylagqIARaaaiFnVdeivvfddseseeekkek..............pseflarlLqYletPpYLrkelFplh 80 
                      t+s+aiP+s+i+na s++qk +lag +ARa+a+F+Vde+++fdd++++++++++              p +fl++l+ YletPpYLrk+lFp+h
       KKY20987.1  36 TLSVAIPGSCIANAVSHDQKNHLAGIVARALAVFCVDEVIIFDDEDTSHKSHKShrqegdhgytgysdPGHFLSHLFAYLETPPYLRKALFPMH 129
                      79********************************************999887669*************************************** PP

  Methyltrn_RNA_3  81 kelkyaglLppldaphhlrsseegeyreGvvvekskekkskkklVniGlkkevklelkqevpegtRVtVkl..............sseesveak 160
                      ++lk+ag Lp+ld+phh +s   ++yreGv+++ ++++ +  ++V+iGl+k + +++ +e+p++tRVtV++              ++ +    +
       KKY20987.1 130 PDLKTAGSLPSLDMPHHSKSFPGCPYREGVTIRYDSKPPDIGTRVDIGLNKWALIPD-VEIPPKTRVTVQTlsntssstqqvssdQTFDFSACT 222
                      *****************99888************998877779**********9999.***********************9876555667889 PP

  Methyltrn_RNA_3 161 vVspsepreeaglywGYsVrlakslsavftespfeggydlsigtsergekveeklaelekkk.efkhllivfGgvrgleaaleadeel...kle 250
                      +Vsp++pr+ +g+ywGY++r+ +sls+vfte+pf++gydlsigtserg ++++ +++ ++ + +++hll+vfGg +gle a+++d++l   +++
       KKY20987.1 223 AVSPDTPRTTSGYYWGYNIRRSTSLSTVFTECPFPSGYDLSIGTSERGVPLSTLISSPTSPIlPYQHLLLVFGGPSGLEYAAKNDPDLrskGIT 316
                      **********************************************************999999************************988888 PP

  Methyltrn_RNA_3 251 gekaeelFdlwlntvpnqgsrtirtEEavliaLal 285
                      g++++elFd+w+n++p+qgsrtirtEEav+++L+ 
       KKY20987.1 317 GSNINELFDYWVNVLPGQGSRTIRTEEAVWLGLMG 351
                      *********************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 2420.86
//
Query:       KKY20988.1  [L=1575]
Description: hypothetical protein UCRPC4_g03905 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.9e-14   51.9   2.9    7.9e-14   51.9   2.9    6.1  8  Med15_fungi  Mediator complex subunit 15
    2.2e-12   46.8   0.3    2.2e-12   46.8   0.3    5.1  4  KIX_2        KIX domain


Domain annotation for each model (and alignments):
>> Med15_fungi  Mediator complex subunit 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.9      0.24   2.2e+03       4      45 ..     191     232 ..     188     256 .. 0.65
   2 ?   -5.3   2.4         2   1.8e+04      18      35 ..     291     307 ..     274     316 .. 0.47
   3 ?   -5.5   2.5         2   1.8e+04      99     103 ..     386     390 ..     360     412 .. 0.56
   4 ?   -8.6   9.9         2   1.8e+04      21      42 ..     584     606 ..     567     614 .. 0.53
   5 ?  -29.5  31.3         2   1.8e+04      34      38 ..     630     634 ..     589     687 .. 0.53
   6 ?   -4.3   0.5         2   1.8e+04      20      42 ..     843     866 ..     838     868 .. 0.70
   7 ?   -3.8   1.9       1.7   1.6e+04      29      46 ..     983    1000 ..     964    1009 .. 0.44
   8 !   51.9   2.9   8.8e-18   7.9e-14       5     110 ..    1015    1129 ..    1011    1131 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.24
  Med15_fungi   4 keklkqiyeevaknavrlkpitnlspeqKaaikqqlqeiqqm 45 
                  ++ + q+ + +++ +  +  ++nl p++ ++i+++  e+ + 
   KKY20988.1 191 PQGMGQMPQMIQNLNAGNMGVSNLNPQEMHEINRMATEMAKS 232
                  555666777777777777778888899999999888887543 PP

  == domain 2  score: -5.3 bits;  conditional E-value: 2
  Med15_fungi  18 avrlkpitnlspeqKaai 35 
                  + r ++++ ++p+q +  
   KKY20988.1 291 QQRPQSVQ-MTPQQSSRA 307
                  22233333.555555544 PP

  == domain 3  score: -5.5 bits;  conditional E-value: 2
  Med15_fungi  99 ksqiq 103
                  + qiq
   KKY20988.1 386 QQQIQ 390
                  11111 PP

  == domain 4  score: -8.6 bits;  conditional E-value: 2
  Med15_fungi  21 lkpitn.lspeqKaaikqqlqei 42 
                   + +++ + ++q+++ +qq q++
   KKY20988.1 584 SPHVQQmMMQQQQQQQQQQQQQV 606
                  33333334444444444444444 PP

  == domain 5  score: -29.5 bits;  conditional E-value: 2
  Med15_fungi  34 aikqq 38 
                  +++q+
   KKY20988.1 630 QMQQH 634
                  22222 PP

  == domain 6  score: -4.3 bits;  conditional E-value: 2
  Med15_fungi  20 rlkpitn.lspeqKaaikqqlqei 42 
                  + + i   l+++ +++i++++q++
   KKY20988.1 843 PDSAIVGiLTKNRQQHIQRMMQQN 866
                  555555668888899999888886 PP

  == domain 7  score: -3.8 bits;  conditional E-value: 1.7
  Med15_fungi   29 peqKaaikqqlqeiqqml 46  
                   p  K++ + ++++  q +
   KKY20988.1  983 PITKEQFAAMTEDQRQKY 1000
                   333333333333333333 PP

  == domain 8  score: 51.9 bits;  conditional E-value: 8.8e-18
  Med15_fungi    5 eklkqiyeevaknavrlkpitnlspeqKaaikqqlqe..iqqmlarvdaliplfykltkneeavkrLlqmrimlkeqleklpq........dqfti 90  
                    +l+q+ +e  +++++lkp++ ++p+ +a ++++l    +++m+ar d li ++++ t++  ++k+L++ r +l +q+++ +         dqfti
   KKY20988.1 1015 ARLHQLVQESKASPPQLKPVP-MQPNIRARMAEKLSMnnSKEMFARADGLIRQYFITTGDDVGTKELISQRDHLLRQFKDNTIqnrtfelvDQFTI 1109
                   689******************.***********98764489*************************************97554789********** PP

  Med15_fungi   91 kpeyLeklksqiqkyfeyvk 110 
                   +++yLek+ + ++  ++++ 
   KKY20988.1 1110 TYDYLEKAMKNMTEKYSWMM 1129
                   **********9999999996 PP

>> KIX_2  KIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.032   2.9e+02       4      32 ..      28      56 ..      25      56 .. 0.90
   2 !   46.8   0.3   2.4e-16   2.2e-12       3      80 ..      56     131 ..      54     133 .. 0.94
   3 ?   -0.2   0.5      0.11     1e+03      19      75 ..     199     252 ..     181     258 .. 0.67
   4 ?   -7.4   5.3         2   1.8e+04      67      79 ..     590     602 ..     583     605 .. 0.49

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.032
       KIX_2  4 wratlspeeRqkivnkiletLkkhlpvsg 32
                 +a+l+++  ++i+  i+++L+++ p++g
  KKY20988.1 28 NQAQLQNQGGNNIIRFITQQLSQQGPYGG 56
                5899********************99875 PP

  == domain 2  score: 46.8 bits;  conditional E-value: 2.4e-16
       KIX_2   3 dwratlspeeRqkivnkiletLkk.hlpvsgpeglnelkkiAvrFEekiFskAtskedYlrkislKmlqmetksqnaas 80 
                  w+++++ ++R   v +i+++L+  +   + ++++ e+ ++A  FE+k+Fs++ +ke Yl++++ K++++++++ ++a+
  KKY20988.1  56 GWQSQVELKDRVMLVRRITDALRLiQ---QPNNNAVETVRVALAFEQKTFSQSPNKETYLQTCQTKLATIRDSRARQAA 131
                 7**********************988...458899*************************************9998876 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.11
       KIX_2  19 kiletLkk.hlpvsg..peglnelkkiAvrFEekiFskAtskedYlrkislKmlqmetks 75 
                 +++++L+  ++ vs+  p++++e+ ++A +     ++k+ ++e+ l+ki++++ +m + +
  KKY20988.1 199 QMIQNLNAgNMGVSNlnPQEMHEINRMATE-----MAKSHTQEE-LEKIRQNLGKMTEGQ 252
                 477777777777777778888888888875.....445555433.666666666665555 PP

  == domain 4  score: -7.4 bits;  conditional E-value: 2
       KIX_2  67 Kmlqmetksqnaa 79 
                  m+q ++++q+++
  KKY20988.1 590 MMMQQQQQQQQQQ 602
                 3444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4451  (0.248257); expected 358.6 (0.02)
Passed bias filter:                      756  (0.0421663); expected 358.6 (0.02)
Passed Vit filter:                       429  (0.0239277); expected 17.9 (0.001)
Passed Fwd filter:                       145  (0.00808746); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 4.14u 0.50s 00:00:04.63 Elapsed: 00:00:01.08
# Mc/sec: 4425.02
//
Query:       KKY20989.1  [L=539]
Description: putative lmbr1 domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-83  280.5   0.1    3.6e-83  280.2   0.1    1.0  1  LMBR1          LMBR1-like membrane protein
    1.7e-19   69.8   0.0    4.1e-19   68.6   0.0    1.7  1  Glutaredoxin   Glutaredoxin
     0.0026   18.1   0.1       0.03   14.7   0.0    2.2  2  DUF836         Glutaredoxin-like domain (DUF836)
     0.0038   16.2   0.3     0.0066   15.5   0.3    1.3  1  IFT57          Intra-flagellar transport protein 57
  ------ inclusion threshold ------
      0.011   15.6   0.7       0.15   11.9   0.2    2.2  2  Glyco_H_20C_C  Glycoside Hydrolase 20C C-terminal domain
      0.035   14.3   1.4       0.12   12.5   0.1    2.3  2  GCN5L1         GCN5-like protein 1 (GCN5L1)
      0.043   14.3   0.0       0.12   12.9   0.0    1.7  1  Thioredoxin_2  Thioredoxin-like domain
      0.047   13.6   0.3       0.13   12.2   0.2    1.8  1  Phage_Mu_Gam   Bacteriophage Mu Gam like protein
      0.066   10.7   3.2       0.09   10.3   3.2    1.1  1  DUF3584        Protein of unknown function (DUF3584)
      0.075   13.3   4.5        2.6    8.3   0.2    2.3  2  FliJ           Flagellar FliJ protein
      0.077   12.5   0.2       0.17   11.3   0.2    1.5  1  DegS           Sensor protein DegS
      0.087   12.6   4.9       0.19   11.5   4.9    1.5  1  ERM            Ezrin/radixin/moesin family
       0.54   10.6   6.4        6.6    7.1   1.2    3.2  3  ABC_tran_CTD   ABC transporter C-terminal domain
       0.61   10.6   3.1       0.42   11.1   0.7    1.9  1  ZapB           Cell division protein ZapB
          1    8.9   6.8        9.9    5.6   0.3    2.2  2  Filament       Intermediate filament protein


Domain annotation for each model (and alignments):
>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.2   0.1     3e-86   3.6e-83     131     510 .]       2     385 ..       1     385 [. 0.94

  Alignments for each domain:
  == domain 1  score: 280.2 bits;  conditional E-value: 3e-86
       LMBR1 131 llllvivlglliyvliilqklsllsiksllpilislantwGlvllilllGyGlvelPrslwreiksdldeelkklyfeaaklntekeeaereledllke 229
                 +++  ++++ l+y+ i  ++++++   +++++l++la++wGl+++i+l+G+Glv++Pr l+r  ++d++ +l++l+ +a+++n+++e+a  + e+l  +
  KKY20989.1   2 MIVFGCGIAGLVYIIID-YGFDVT---AIKALLVALAYVWGLMIAIYLMGHGLVAVPRRLFR--RADISGTLRRLQSHAPRINEKLEDAISKYEELEAQ 94 
                 56777888888999999.999999...***********************************..*********************************** PP

       LMBR1 230 vkklrksisesdp.lrkyleeilk....................kvPeeiaeklksnenkteeslaklekqlikalqkrertekqwkrllekaleledi 307
                 v++l+++++ +++ +++++ee+ +                    k+P++i+++          +la+l ++l +a+++r+r+ ++w++ l+ a++l++i
  KKY20989.1  95 VRQLQQRKTGTARdYQEWIEELADmtstpenrasslpgitdvtaKTPAVITDR----------YLADLGRRLAQARHQRARRIEEWDQVLQSAADLQAI 183
                 *************999********99888888887777777777777777777..........************************************ PP

       LMBR1 308 iknksskekefkssessrrgefakqgklkltptleyywaklllplvllilsiilvllsiiiilseltkllekpplslfalfievsaessfglfga..el 404
                 +++k+s++  f +   s++++f ++ ++++tp+++y+++++llp++++il ++ +l+si+i++se++k+   p+ls+ +l+++++ +++   +g+  +l
  KKY20989.1 184 LDSKASQKLSFGRV--SPHSSFLER-TTFITPYMRYHLYVHLLPAFRIILGALAMLASICITWSEIIKFP-APQLSIVSLTVVHHPSQTDYKVGFggQL 278
                 ************87..888999888.6699****************************************.***********888877777788888** PP

       LMBR1 405 ieillilYlmlcayvglfklklpnfyrlaphhqTdmsslifnaalllrltsPlclnflglihfd...eTaFtqllGsmdvleflggfgfviyypifill 500
                   ++++lY+ +ca+v++ ++ ++++++l++ ++T+ ++ +++a+++++lt+Pl +nfl+++  +   +T F+++lG++++l++lg  gf++ +pi++l+
  KKY20989.1 279 TAAAWLLYMSTCALVSINDVPVWGNRALVR-RNTYSEHACWYAGQIAKLTVPLSYNFLTFLPKTvhqNTVFYHFLGRLINLTPLG-TGFDYVFPILVLI 375
                 ******************************.******************************98899*******************.************* PP

       LMBR1 501 lvvatlfnll 510
                 +++atlfnl+
  KKY20989.1 376 PACATLFNLY 385
                 ********97 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   3.4e-22   4.1e-19       1      60 []     454     516 ..     454     516 .. 0.98

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 3.4e-22
                   EEEEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSH...HHHHHHHHHHTSSSSSEEEETTEEE CS
  Glutaredoxin   1 vvlftkptCpyCkkakrlLkelgvkfeeidvdkde...eireelkelsgvrtvPqvfidgkhv 60 
                   v++f+k++CpyCk++k lL e+g+kf++ ++d+ +   +i+++l+e++++r+vP++fi+++h+
    KKY20989.1 454 VMVFSKSYCPYCKATKSLLSEKGAKFQVLELDQIDdgaAIQDALEEITNQRSVPNIFIKQQHI 516
                   89*******************************98899************************8 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.55   6.5e+02      16      57 ..      77     120 ..      75     136 .. 0.82
   2 !   14.7   0.0   2.5e-05      0.03       2      35 ..     454     488 ..     453     531 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.55
                 HHHHHHH.HCCCTTEEEEEEETTT-CC.CHCCCCTTTTEEEECT CS
      DUF836  16 akekLke.lkleegleleviDIakdee.leakYgleipvlaleg 57 
                 ++ekL++ +++ e+le +v+  +++++   + Y++ i++la  +
  KKY20989.1  77 INEKLEDaISKYEELEAQVRQLQQRKTgTARDYQEWIEELADMT 120
                 68888887788888999*****9988889999***999998655 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 2.5e-05
                 EEEEE-TT-HHHHHHHHHHHHHCCCTT.EEEEEEE CS
      DUF836   2 ltLyskpgChlCeqakekLkelkleeg.leleviD 35 
                 ++ +sk +C+ C+  k++L+e + + + lel++iD
  KKY20989.1 454 VMVFSKSYCPYCKATKSLLSEKGAKFQvLELDQID 488
                 789*****************877666656666665 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.3   5.5e-06    0.0066     252     314 ..      61     123 ..      59     131 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.5e-06
       IFT57 252 edisktlekiesrEkylnsqleellqeyreaqeelsevkekykqlsegvseltrelaeiseel 314
                  dis tl +++s   ++n++le+ +++y+e+++++ +++++     +  +e  +ela+++   
  KKY20989.1  61 ADISGTLRRLQSHAPRINEKLEDAISKYEELEAQVRQLQQRKTGTARDYQEWIEELADMTSTP 123
                 58999***************************************************9998765 PP

>> Glyco_H_20C_C  Glycoside Hydrolase 20C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   0.00013      0.15     147     188 ..      63     104 ..      60     110 .. 0.90
   2 ?    1.8   0.0      0.16   1.9e+02      57      88 ..     158     189 ..     137     194 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
  Glyco_H_20C_C 147 lGGllaRlesaeeRLeaYlegkierieELeeerlpydpeeke 188
                    + G l Rl+s + R+++ le++i++ eELe+++   ++++++
     KKY20989.1  63 ISGTLRRLQSHAPRINEKLEDAISKYEELEAQVRQLQQRKTG 104
                    67999****************************999998875 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.16
  Glyco_H_20C_C  57 ekleelaekskelnelfelykkLakvLalKae 88 
                    +  ++ a++ +e++++++  + L ++L  Ka 
     KKY20989.1 158 QARHQRARRIEEWDQVLQSAADLQAILDSKAS 189
                    33333444478999**************9997 PP

>> GCN5L1  GCN5-like protein 1 (GCN5L1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1    0.0001      0.12      37      80 ..      76     119 ..      59     124 .. 0.88
   2 ?   -0.5   0.1       1.1   1.3e+03       8      37 ..     158     187 ..     146     193 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.0001
      GCN5L1  37 klnsgvaeayanqkklekeakalqanvakfakqtdqWlalvesf 80 
                  +n++++ a+++ ++le+++++lq++ +  a+  ++W++   ++
  KKY20989.1  76 RINEKLEDAISKYEELEAQVRQLQQRKTGTARDYQEWIEELADM 119
                 699***********************************987765 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.1
      GCN5L1   8 kqaerreeqekakkeaiesaaaltealvdk 37 
                 + +++r++  ++++++++saa+l+  l  k
  KKY20989.1 158 QARHQRARRIEEWDQVLQSAADLQAILDSK 187
                 444566677777888888888777766655 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.6e-05      0.12       7      40 ..     452     484 ..     448     520 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.6e-05
  Thioredoxin_2   7 pvlvvftdpdCpyCkklkkelkelddvtvrvllf 40 
                     +++vf+++ CpyCk+ k  l+e  + ++ vl  
     KKY20989.1 452 NTVMVFSKSYCPYCKATKSLLSEK-GAKFQVLEL 484
                    689*************88866665.444443343 PP

>> Phage_Mu_Gam  Bacteriophage Mu Gam like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   0.00011      0.13      10      92 ..      66     145 ..      61     159 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCTHHHH-..-----EE-SS-EE---------.- CS
  Phage_Mu_Gam  10 kiaelkreleeieaeaneeiaaikekleaeleplkkeieylesllkqYaeankdeLfkdgktKslklpfGkvgfrkstpkvkk 92 
                   ++  l+    +i+++++++i +++e lea++ +l+++++   +  +++ e++  ++++ ++ + ++   G   +  +tp v++
    KKY20989.1  66 TLRRLQSHAPRINEKLEDAISKYEE-LEAQVRQLQQRKTGTARDYQEWIEELA-DMTSTPENR-ASSLPGITDVTAKTPAVIT 145
                   5677899999************965.99************************9.899999999.4555577777777777665 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.2   7.5e-05      0.09     656     757 ..      66     173 ..      55     188 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7.5e-05
     DUF3584 656 tlerlqnekesekdklekaiaerkqqaeeqlqkldaqlkqleeqqkaaleelkedls..eerlekkakwqevvgel.....deqlaelkkaieaartqa 747
                 tl+rlq++  + ++kle ai +  ++ e+q+++l++ +    ++ ++++eel++  s  e+r      + +v +++     d  la l   +++ar q+
  KKY20989.1  66 TLRRLQSHAPRINEKLEDAISKY-EELEAQVRQLQQRKTGTARDYQEWIEELADMTStpENRASSLPGITDVTAKTpavitDRYLADLGRRLAQARHQR 163
                 799*****************875.6789*************************987733678888889999999853333377889999********** PP

     DUF3584 748 karlkeleea 757
                 ++r++e ++ 
  KKY20989.1 164 ARRIEEWDQV 173
                 ***9998874 PP

>> FliJ  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.7      0.01        12      10      58 ..      77     117 ..      65     125 .. 0.76
   2 ?    8.3   0.2    0.0022       2.6       5      55 ..     154     205 ..     151     208 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.01
        FliJ  10 aqrelqqaeekleeleqyrqeyqkqlsgeaqglsaaelrnyqafisald 58 
                 ++ +l++a +k eele + +++q+++ g+a        r yq++i+ l 
  KKY20989.1  77 INEKLEDAISKYEELEAQVRQLQQRKTGTA--------RDYQEWIEELA 117
                 567788888888888888888888888887........77777777776 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0022
        FliJ   5 reLaeaqrelqqaeekleeleqyrqeyqkqlsgea.qglsaaelrnyqafis 55 
                 r+La+a++++++  e+ +++ q  +++q  l ++a q ls  +    ++f++
  KKY20989.1 154 RRLAQARHQRARRIEEWDQVLQSAADLQAILDSKAsQKLSFGRVSPHSSFLE 205
                 89*********************************88999888888888876 PP

>> DegS  Sensor protein DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00015      0.17      30      77 ..      68     115 ..      62     122 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
        DegS  30 erlkkeleelkeevsevikevdklekkerkarkrLaeVskdFkkysee 77 
                 +rl+++  +++e++++ i++ ++le + r+ ++r +   +d++++ ee
  KKY20989.1  68 RRLQSHAPRINEKLEDAISKYEELEAQVRQLQQRKTGTARDYQEWIEE 115
                 78999999***********************************99887 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   4.9   0.00016      0.19      11     119 ..      64     181 ..      59     208 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
         ERM  11 eerLkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarle.........eeser 100
                    L++lq+ a + +e+L+++  + e+L+ + r++++ +   +++ +e  ee + +  + e+ +++   + + +++  + +++           +++ +
  KKY20989.1  64 SGTLRRLQSHAPRINEKLEDAISKYEELEAQVRQLQQRKTGTARDYQEWIEELADMTSTPENRASSLPGITDVTAKTPAVITDRYladlgrrlaQARHQ 162
                 5679999***********************************************999999999988777666666655554433333333333377777 PP

         ERM 101 keeeaerLkeeleeareae 119
                 +++  e++ + l+ a + +
  KKY20989.1 163 RARRIEEWDQVLQSAADLQ 181
                 7777777777777776666 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.2    0.0055       6.6      19      64 ..      69     112 ..      59     118 .. 0.59
   2 ?    3.7   0.0     0.061        73      42      65 ..     148     171 ..     136     174 .. 0.84
   3 ?    0.2   0.1      0.79   9.4e+02      19      57 ..     492     533 ..     483     537 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0055
  ABC_tran_CTD  19 aLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeelyerW 64 
                   +L+     ++++l+d+   s++e+l +  ++l++ ++  ++ y++W
    KKY20989.1  69 RLQSHAPRINEKLEDAI--SKYEELEAQVRQLQQRKTGTARDYQEW 112
                   44444445566666554..666666666666666666666666666 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.061
  ABC_tran_CTD  42 klaelsaeleeleaeLeelyerWe 65 
                    la+l ++l++++++ ++  e+W 
    KKY20989.1 148 YLADLGRRLAQARHQRARRIEEWD 171
                   499********************7 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.79
  ABC_tran_CTD  19 aLEeeiaeleaeladpely.sdp..eklaelsaeleeleaeL 57 
                   a++  ++e++++ + p+++ +++     ++l+a++ +l++ L
    KKY20989.1 492 AIQDALEEITNQRSVPNIFiKQQhiGGNSDLQARKSQLKDLL 533
                   566778888888888888863333666788888888888776 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.7   0.00036      0.42      11      58 ..      79     126 ..      76     134 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00036
        ZapB  11 skiqkaidtitlLqmeieeLkeeneelkeenreleeeneqlkeereaw 58 
                 +k + ai ++++L  ++++L++++   ++  +e  ee+  +  ++e+ 
  KKY20989.1  79 EKLEDAISKYEELEAQVRQLQQRKTGTARDYQEWIEELADMTSTPENR 126
                 79999************************9999999999888777765 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   1.6     0.009        11     245     287 ..      69     111 ..      59     118 .. 0.64
   2 ?    5.6   0.3    0.0083       9.9      53      99 ..     146     192 ..     132     196 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.009
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 245 qlaeleerleaeleklqeklseleeelaeireemarqlreYqe 287
                 +l+    r++++le++ +k +ele+++++++++     r+Yqe
  KKY20989.1  69 RLQSHAPRINEKLEDAISKYEELEAQVRQLQQRKTGTARDYQE 111
                 4455555666666777777777777777777777777777766 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0083
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  53 ekeleelrkqldeltkerarlqleldnlreeledlrkkyekelnkre 99 
                  ++l++l ++l ++ ++rar   e d++ ++++dl++ ++++++++ 
  KKY20989.1 146 DRYLADLGRRLAQARHQRARRIEEWDQVLQSAADLQAILDSKASQKL 192
                 5789********************************99999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1444  (0.0805399); expected 358.6 (0.02)
Passed bias filter:                     1169  (0.0652016); expected 358.6 (0.02)
Passed Vit filter:                       160  (0.00892409); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.81u 0.35s 00:00:01.16 Elapsed: 00:00:00.52
# Mc/sec: 3122.15
//
Query:       KKY20990.1  [L=714]
Description: putative peptide transporter mtd1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.7e-134  449.8  40.3   2.2e-134  449.4  40.3    1.0  1  OPT       OPT oligopeptide transporter protein


Domain annotation for each model (and alignments):
>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  449.4  40.3  1.2e-138  2.2e-134      35     616 .]      67     689 ..      61     689 .. 0.96

  Alignments for each domain:
  == domain 1  score: 449.4 bits;  conditional E-value: 1.2e-138
         OPT  35 sipaallafplgkalarilpk.............lslnpgp.ftikEnvliqtmasaaatlalatglivvipalelygqsagfgylillslsvqllGvg 119
                 +++  +l +++g+a+a + p+             ++ln+g+ f ikE+v++ ++as+++++  + ++ +v +++  y+ s+++ +++l ++s++l+G++
  KKY20990.1  67 PVIRNVLVYIFGQAWALFTPRperfkskwvqkalRFLNSGQpFGIKEHVVAALVASSGNNGLSGVEIYAVERLF--YNISISASTAVLGTFSISLCGFV 163
                 567789****************************99999877********************************..*********************** PP

         OPT 120 fagplRkflvypeklifPsglataellkalhkpegeeksrlkfflivflgsfvwglfplylfpalssfswltwiapknv.....vlanlf.......gl 206
                 +ag+lR+++vyp++++++s+l+++ l+++lh  + ++k rl  f+++++ +++w+lfp+y+ ++l ++s+++ ++  +      v++++f       gl
  KKY20990.1 164 LAGLLRPLIVYPAEMVYWSTLPQVVLFQNLHFDQLANKGRLIKFGWALALAAAWELFPAYIATWLGGISIFCLASMHASehtrtVFSTIFggassneGL 262
                 *************************************************************************99877666666888888********* PP

         OPT 207 gllpltfdwnviaayiGsglivplwvavnmliGavlswgiliPllyysngwypaylp.............ydvteildedgvldyekyigyglmllaal 292
                 gll++ +dw++i +++   l  p++ +vn +iG+v+++  +++l yy+n w+++++p             +++t+i++++g+ d  + +++gl++l+++
  KKY20990.1 263 GLLNFGLDWQYIQSTY---LSLPFKQQVNSWIGYVIWYIAMLGL-YYGNAWNAQSFPfmssslfqrngtqFSITSIVNNQGIIDLNRVEEVGLPYLTSS 357
                 **************99...*************************.****************************************************** PP

         OPT 293 vallylvqfaaitllivhtilkhgkdikaalksarsprteeddrhrrlmrkykdvpmwwylallvlslvigiivvealftqlpvwglllalllafllai 391
                  +++y++q+ ai +li+h+i+++gkd+  a+k+   ++++++d+h+++m ky++vpmwwylal++l++ +g+iv ++ +t+lp+wg+++alll++++a 
  KKY20990.1 358 TVWGYFTQNLAIGALITHVIIFYGKDMYLAWKQG--RSRTQPDPHYQAMLKYQEVPMWWYLALFALAFFAGLIVNIKGETTLPAWGYIFALLLGAFIAP 454
                 *********************************9..99************************************************************* PP

         OPT 392 vsaiiaGltglnpvsgigkltqlifgallpgrpvanlvfgavvyaaaaqagdfmqDLKtGhllkasPraqfvaqliGtlvgavvniavlkllvkaygdi 490
                 +s+i++Gl+g+  ++++++l+++++ga++pgrp+a+l+f++++++++  a +++++LK+G+++k+++r +f +q++Gtl+ga +n+av++ +v++ ++i
  KKY20990.1 455 FSCILYGLYGT--GVATNQLSKMVAGAVHPGRPLAGLYFASWSHQVILLAVNLANWLKVGQYTKVPHRVMFGTQIYGTLLGAGLNYAVMTTIVTNKREI 551
                 ***********..********************************************************************************999999 PP

         OPT 491 ct.adasnaftaPqakvfaavavl.lvggk........kglpwafllgavapfilllllkkfpkkstarklplplafa..vgfy.lppslsialliggl 576
                 +  ++++n++++ ++++ +++a++ +++++          +p a+l+g+++p+i +  +k fp + + ++l+++++ +  +++y  ++s+ ++ + +g+
  KKY20990.1 552 LLdPKGNNVWSGSTVQSLNSQAITwALAKEvygvkghyLIVPLALLIGLALPVIHWGSIKIFP-RLREWPLNTVIIASyaGTIYtGNTSWIWSSIAVGI 649
                 999**********************8888889999999999**********************.6666777999998765666645666688******* PP

         OPT 577 ianlwlkrrdaewakkynyvlaaGLiaGealmgviiaflv 616
                 ++++wl+rr +  +++yny+++a+L+ G +++++i++f+v
  KKY20990.1 650 FSQFWLRRRLPRIYNEYNYLIGAALDGGSQIVIFILSFAV 689
                 *************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.36s 00:00:01.04 Elapsed: 00:00:00.56
# Mc/sec: 3869.36
//
Query:       KKY20991.1  [L=352]
Description: hypothetical protein UCRPC4_g03908 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-72  241.3   0.0    1.2e-71  240.8   0.0    1.2  1  Chalcone_2  Chalcone isomerase like
     0.0031   17.7   0.1      0.047   13.8   0.0    2.4  3  Chalcone_3  Chalcone isomerase-like


Domain annotation for each model (and alignments):
>> Chalcone_2  Chalcone isomerase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.8   0.0   1.3e-75   1.2e-71       1     204 []      99     333 ..      99     333 .. 0.97

  Alignments for each domain:
  == domain 1  score: 240.8 bits;  conditional E-value: 1.3e-75
  Chalcone_2   1 eeytLlGlGvRtVsflsiqVYvvGlYvaksdiaklqkvlqskllskkviattlvssekeelkkalldpekseelweelldeg.irtavrivPvrnTdfs 98 
                 eey+LlGlG+RtVsfl+iqVYvvGlYva  dia+lq++l ++   ++++attlv+ e+++l ++l+dp+ksee+w++++++g irta+rivP+rnTdf+
  KKY20991.1  99 EEYQLLGLGIRTVSFLGIQVYVVGLYVALPDIATLQERLIRT---VDPVATTLVPAERSKLYDLLHDPSKSEEIWSSIIKSGnIRTAIRIVPTRNTDFG 194
                 69***************************************9...8999******************************9955**************** PP

  Chalcone_2  99 hLrDGfvraitarakkkk....eeeedeefgeslkefkslF..nrkgsvpkgkeLlLerdangeLsvlyedkkkk........................ 167
                 hLrDG+ r+it +++ ++    +e+ d++fg+s++efk++F  ++kg+vpkg++LlL r+++geL++++e+ k+                         
  KKY20991.1 195 HLRDGWLRGITGKTQIANangsTEFLDDAFGQSVSEFKTIFggTNKGKVPKGETLLLLRNKKGELQAYHEEIKTLkskssdtpsdqlpppppsqkqtkk 293
                 ***************99999999******************88789***********************99766568899******************* PP

  Chalcone_2 168 ...kleklGrvedervsrllwlnYLagkkvaseearksvv 204
                    +++ lG+v+der+srll+l YL+gk+v+se+ar+svv
  KKY20991.1 294 tkiQRSFLGEVKDERISRLLLLLYLGGKNVSSEGARDSVV 333
                 *999999*******************************97 PP

>> Chalcone_3  Chalcone isomerase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   5.3e-06     0.047      18      43 ..      99     126 ..      90     148 .. 0.81
   2 ?   -0.9   0.0      0.17   1.6e+03      93     129 ..     224     264 ..     165     278 .. 0.61
   3 ?    0.4   0.0     0.072   6.4e+02     128     156 ..     296     324 ..     250     326 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.3e-06
  Chalcone_3  18 keLkLnGaGlRskff..fkvYvagLYlp 43 
                 +e +L G+G+R++ f  ++vYv+gLY++
  KKY20991.1  99 EEYQLLGLGIRTVSFlgIQVYVVGLYVA 126
                 6889*******87663378*******86 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.17
  Chalcone_3  93 lkariekfkalfa....kevkkgdvitldylpgkgvvvvvn 129
                 + +++ +fk++f      +v kg+++ l  +++  ++++ +
  KKY20991.1 224 FGQSVSEFKTIFGgtnkGKVPKGETLLLLRNKKGELQAYHE 264
                 34455666666642221367777777666666555665554 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.072
  Chalcone_3 128 vngkqlgtiegedfakAllkiwLGekPad 156
                 ++   lg++++e +++ ll  +LG k ++
  KKY20991.1 296 IQRSFLGEVKDERISRLLLLLYLGGKNVS 324
                 34445789999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.53
# Mc/sec: 2011.32
//
Query:       KKY20992.1  [L=488]
Description: putative sterol o-acyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-33  114.0  19.5    9.4e-33  114.0  19.5    2.1  2  MBOAT     MBOAT, membrane-bound O-acyltransferase family


Domain annotation for each model (and alignments):
>> MBOAT  MBOAT, membrane-bound O-acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.6    0.0037        66      64      96 ..     139     176 ..     101     217 .. 0.71
   2 !  114.0  19.5   5.3e-37   9.4e-33      74     347 ..     234     486 ..     208     487 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.0037
       MBOAT  64 flel.....klhslslvfrklasaallsklpslleylg 96 
                 f+       +  +++ vf  l++++  +k++s+++y+g
  KKY20992.1 139 FWVElpfflHWTWTAQVFFILHTLVIFMKMHSYVFYNG 176
                 22225554555555666666666666666666666665 PP

  == domain 2  score: 114.0 bits;  conditional E-value: 5.3e-37
       MBOAT  74 lvfrklasaallsklpslleylgYvffyplllvGPilsyseymsfvesplsrllytakrnfavalyalflgltylilieyvlskicakdftifkmlssa 172
                  ++ +l+s   + ++p+ l+y++Y++f    ++ P+l+y+  +++++ + +++    + ++ + ++++fl    li  +  +  ++      ++ + ++
  KKY20992.1 234 DLAGELTSPLGQVTYPHNLTYANYADF----IFCPTLCYE--LEYPRVQSINWMEL-FWKVLAVFGCIFL----LIITSEDFIVPVLAESAVHLKSVDR 321
                 567788999999***************....566******..9**********664.5555555555555....6666666666666666666666666 PP

       MBOAT 173 qllmrsvimr.illlllllfllifdflglwlvalgedilsGlgvngarldrvadrniygdwenavsfsefwraWNipvhkWLlryvYkplgskkfklnk 270
                 ++ + ++i + ++  ll +f +if  + l  ++     l G +   a+ +r+adr++y+dw+n+ ++ ef+r+WN+pvh +L+r+vY ++  + f +  
  KKY20992.1 322 FFPEKALILAeTISWLLFPFMVIFLLVFLVIFE----YLLGAF---AEVTRFADRHFYSDWWNSADWLEFSREWNVPVHHFLRRHVYFSSR-SYFSN-- 410
                 666666554436666666666666333223333....468855...8*******************************************5.56666.. PP

       MBOAT 271 slatlatFlfsAvwHglalgyliwfvlrvllllveklimrlvalsnlkfdrrrailsnvifwlgaflgpslalllyl 347
                  +a+++tFl+sA+ H+l +  +i+++lr++ + + +l+ ++va ++ k  r   i  n+ fw +++lg s+++ ly+
  KKY20992.1 411 GVAMFITFLVSAFGHELIM-GCITKKLRGYGFVAMMLQLPIVAVQRSKYVRGNWIFNNATFWASMILGLSIMCALYV 486
                 9******************.8999*******************88888777777888999**************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3335.86
//
Query:       KKY20993.1  [L=848]
Description: putative ap-1 complex subunit gamma-1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.9e-143  478.8   0.1   2.2e-143  478.6   0.1    1.1  1  Adaptin_N        Adaptin N terminal region
    1.2e-18   67.4   0.0    2.9e-18   66.2   0.0    1.7  1  Alpha_adaptinC2  Adaptin C-terminal domain
    1.4e-08   35.0   4.9    5.7e-05   23.2   0.0    4.0  3  Cnd1             non-SMC mitotic condensation complex subunit
    1.4e-06   28.5   0.4      0.075   13.4   0.0    4.0  4  HEAT_2           HEAT repeats
    0.00056   19.9   1.5        6.6    7.3   0.1    4.4  4  HEAT             HEAT repeat
    0.00067   19.3   0.7       0.01   15.5   0.0    2.8  4  DUF3730          Protein of unknown function (DUF3730)
  ------ inclusion threshold ------
      0.078   13.0   0.0         80    3.5   0.0    4.9  6  Arm              Armadillo/beta-catenin-like repeat
       0.09   12.3   0.0        3.5    7.1   0.0    2.5  2  CLASP_N          CLASP N terminal


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  478.6   0.1  9.9e-147  2.2e-143       2     520 ..      21     579 ..      20     583 .. 0.96

  Alignments for each domain:
  == domain 1  score: 478.6 bits;  conditional E-value: 9.9e-147
                 HHHCCHHHHHHCCSSS...-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCCSSSHHHHH CS
   Adaptin_N   2 ekriqqelaeilnsnk...dddekkkeavkkliylialGedvsflffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlkdpnqlirg 97 
                 ++++q+e+a+i+ s++    d++ ++++v+kl+yl++lGe+++f+++e++kl+as +f +Krl+Yl  +ll++e++++++Lvtnslq+Dlk++nq+++g
  KKY20993.1  21 RAVVQKESAAIRASFReesHDHNVRRNNVAKLLYLFTLGERTHFGQIECLKLLASPRFADKRLGYLGTMLLLDENQEVLTLVTNSLQNDLKHSNQYVVG 119
                 6789**************99******************************************************************************* PP

                 HHHHHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCCCC......... CS
   Adaptin_N  98 lALrvLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleeikkndrlll......... 187
                 lAL++L++i + e+++dl+p+i++l++ ++py+r+kAal+++++ +k pdl++++ +++ k ll+d+++gv+l+ ++l +++ ++ ++l          
  KKY20993.1 120 LALCTLGNIASVEMSRDLFPDIENLISTSNPYIRRKAALCAMRICRKVPDLQEHF-FDKAKTLLQDRNHGVLLCGLTLVTSM-CEADELEggeegivem 216
                 ****************************************************996.**************************.6666655666666656 PP

                 ..HHHHHHHCCHHHHH...........HCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCG.......CSSCHHHHHHHHHCCHCCCCSTHHH CS
   Adaptin_N 188 ..kllpklvrrLcnll...........teldpwlqvkiiklltrlarqepeerskkellesllnllq.......ssnnaVlletvnlivelapkneliv 266
                    ++p+lvr L+ l+           +++dp+lqvki++ll++l r   e +   el++++l++++       +++n++l+e+v +i +++ ++ l+v
  KKY20993.1 217 frPAVPLLVRTLKGLTtsgyapehdvsGITDPFLQVKILRLLRELGRGSGETS---ELINDILAQVAtntdatkNVGNSILYESVLTILDIEADSGLRV 312
                 6688888888888777*******************************776666...8****************************************** PP

                 CCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHXXTTTT.TTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHHHHHHHHHHH CS
   Adaptin_N 267 lavnaLvrllsskdenlryvaLrtllkivkkepkavq.hldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevadedfksklvkaI 364
                 l vn+L+++ls+kd+n+ryvaL+tl k+v  ep+avq h+++++++l+ d+d+sir++aldl+++l+ e+Nv+ +++eL+ ++ evad +fk  + ++I
  KKY20993.1 313 LGVNILGKFLSNKDNNIRYVALNTLIKVVAVEPNAVQrHRNTILECLR-DPDISIRRRALDLSFTLIREDNVRVLIRELLAFL-EVADAEFKPIMTTQI 409
                 ************************************************.**********************************.*************** PP

                 HHHHHHSCCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCG.XXSHHHHHHHHHHHHHTTTTXTT.............. CS
   Adaptin_N 365 grlaekfatdaewvldvllellslsgesvkdeivevirdliqkvpelheeiiekLaellek.ieseearaaaiWllGeygelvsn.............t 449
                 g+ a++fa++++w++d++l++ +l+g++vk++i++++ +li + p+l+ ++++kL+++l++ i++e++  a +W++Ge+g+l+ +              
  KKY20993.1 410 GIAADRFAPNKRWHIDTMLRVVKLAGNYVKEQILSSFVRLIATSPDLQTYSVQKLYAALKAdITQEALTLAGAWVIGEFGDLLLRggsyeeeelvkevR 508
                 *************************************************************9***********************************98 PP

                 ...HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THXHHHHHHHHHHHXXSHHHHHHHHHHHHHH CS
   Adaptin_N 450 e.sasdllrslaekfvlesekvklqiltalvKlyltspdketqekliqlvlslatssdlevrdRaveylqll 520
                 e ++ dl+++++++ ++++  v  +i+ta++Kl+++ +d  + ek++ l+   + ++++ev++Ravey++l+
  KKY20993.1 509 EsDIVDLFTTILNSTYATPI-VTEYIITASMKLSTRISDPAQIEKIRRLLGGRTADLSIEVQQRAVEYSNLF 579
                 88************999887.999**************************99999***************98 PP

>> Alpha_adaptinC2  Adaptin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   1.3e-21   2.9e-18       3     109 ..     738     847 ..     736     848 .] 0.93

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 1.3e-21
                      EEEEEETTEEEEEEEEETTSTTEEEEEEEEEE-S.SS-EEEEEEEEEEBTTCEEEEEEES-S-B-TTCEEEEEEEEEEES...CTTS-EEEEEE CS
  Alpha_adaptinC2   3 vvlyekddlqIgfkfekperpgqiritlsftNks.sqpisnfsfqaavpkslklqlqppsstvlppnpggqitqvllien...pskkplrmrlr 92 
                      +++y+k+d+ +++++++   +g +++ ++f+N+s    +s + +qaavpks+kl+l+++++++l++  g++ tq ++i++   + + +lr+rl+
       KKY20993.1 738 HTAYSKNDIVLTLQVSR-AASGGAQVLARFKNNSnFDIFSGVGLQAAVPKSQKLTLNAINKSTLSG--GEEGTQGMKIVGvggALPPKLRLRLK 828
                      699**************.****************555579*************************8..99999****99999999********* PP

                      EEEE.CTC.EEEEEEEEEE CS
  Alpha_adaptinC2  93 isyk.vgq.aikeqidvlk 109
                      ++y+  g+ ++++q+d+++
       KKY20993.1 829 VTYTkEGSqPVTDQVDWTE 847
                      ****86668******9975 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1       0.2   4.5e+02      65      89 ..      88     113 ..      69     119 .. 0.75
   2 !   23.2   0.0   2.6e-08   5.7e-05       4      88 ..     119     203 ..     116     289 .. 0.82
   3 !    9.6   0.3   0.00038      0.86       2      54 ..     329     383 ..     315     407 .. 0.60

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.2
        Cnd1  65 kll.eDenprVvanalaalteiseks 89 
                 ++l  Den++V +++ ++l++ ++ s
  KKY20993.1  88 TMLlLDENQEVLTLVTNSLQNDLKHS 113
                 45449999999999999998766665 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 2.6e-08
        Cnd1   4 alairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteisek 88 
                 +la+ tlg i   ++   l +++++ ++ ++py+R+ aa++  ++ ++    ++ f+++ ++ll+D n+ V    l++ t + e 
  KKY20993.1 119 GLALCTLGNIASVEMSRDLFPDIENLISTSNPYIRRKAALCAMRICRKVPDLQEHFFDKAKTLLQDRNHGVLLCGLTLVTSMCEA 203
                 69********************************************9999999****************9987666666666555 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00038
        Cnd1   2 iRalairtlg..cirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmv 54 
                 iR  a+ tl   +   pn v+   + + ++L+D+d  +R+ a+ +   Li++d v
  KKY20993.1 329 IRYVALNTLIkvVAVEPNAVQRHRNTILECLRDPDISIRRRALDLSFTLIREDNV 383
                 5555555555533333556666666666666666666666665555555555544 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   3.3e-05     0.075       6      60 ..     108     165 ..     103     186 .. 0.80
   2 ?   -3.6   0.0         7   1.6e+04      11      26 ..     247     263 ..     245     285 .. 0.51
   3 !    9.3   0.1   0.00066       1.5      33      82 ..     315     370 ..     307     388 .. 0.73
   4 ?    0.1   0.0      0.49   1.1e+03      20      59 ..     536     580 ..     531     601 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.3e-05
      HEAT_2   6 qalendpdpevrraairaLgrignp....ealpaLvellededpavRraaaeaLgaigd 60 
                 + l ++++++v   a+ +Lg+i++     +++p + +l+++++p++Rr aa  + +i +
  KKY20993.1 108 NDL-KHSNQYVVGLALCTLGNIASVemsrDLFPDIENLISTSNPYIRRKAALCAMRICR 165
                 557.8999999999******99874334499********************99888754 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 7
      HEAT_2  11 dpdpevrr.aairaLgr 26 
                 dp+ +v++ + +r+Lgr
  KKY20993.1 247 DPFLQVKIlRLLRELGR 263
                 55556664466666664 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00066
      HEAT_2  33 lpaLvellededpavRraaaeaLgai......gdpealpaLkellddddddvvRea 82 
                 +++L ++l+++d ++R+ a ++L ++      + ++  +  +e+l+d+d +++R+a
  KKY20993.1 315 VNILGKFLSNKDNNIRYVALNTLIKVvavepnAVQRHRNTILECLRDPDISIRRRA 370
                 56677778888888888888888766443332235566788888888777777765 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.49
      HEAT_2  20 airaLg.rignpealpaLvell..eded..pavRraaaeaLgaig 59 
                 a + L  ri +p  ++ +++ll  +++d   +v++ a+e+   +g
  KKY20993.1 536 ASMKLStRISDPAQIEKIRRLLggRTADlsIEVQQRAVEYSNLFG 580
                 556677678999999999999987666654689999998866666 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.9   1.1e+04       6      29 ..     107     130 ..     101     131 .. 0.71
   2 ?    5.2   0.0     0.014        31       2      29 ..     138     165 ..     137     167 .. 0.84
   3 ?    3.4   0.0     0.052   1.2e+02       6      28 ..     319     341 ..     315     343 .. 0.82
   4 !    7.3   0.1     0.003       6.6       3      21 ..     353     371 ..     352     373 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.9
                 HHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLgalae 29 
                 ++ l++++  V   A+ +Lg++a+
  KKY20993.1 107 QNDLKHSNQYVVGLALCTLGNIAS 130
                 455677777777777778999987 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.014
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                 +P + +l+s ++p +R+ Aa++  ++++
  KKY20993.1 138 FPDIENLISTSNPYIRRKAALCAMRICR 165
                 5667788899************999987 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.052
                 HHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLgala 28 
                  k ls ++ ++R+ A+++L +++
  KKY20993.1 319 GKFLSNKDNNIRYVALNTLIKVV 341
                 577999************98765 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.003
                 HHHHHHHT-SSHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAa 21 
                 +++l++l+Dp+ ++R+ A+
  KKY20993.1 353 NTILECLRDPDISIRRRAL 371
                 579************9997 PP

>> DUF3730  Protein of unknown function (DUF3730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.62   1.4e+03       4      47 ..     106     147 ..     101     157 .. 0.77
   2 !   15.5   0.0   4.5e-06      0.01     103     157 ..     157     215 ..     152     219 .. 0.86
   3 ?   -0.6   0.0      0.36   8.1e+02      49      83 ..     246     282 ..     212     299 .. 0.69
   4 ?   -2.9   0.0       1.8   4.1e+03     121     162 ..     442     483 ..     424     485 .. 0.60

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.62
     DUF3730   4 LlsalekssnpelvllllkglpsLarhkfcvpevlpfikvLssr 47 
                 L++ l++s n+ +v l l +l+++a+++ ++  + p i++L s+
  KKY20993.1 106 LQNDLKHS-NQYVVGLALCTLGNIASVE-MSRDLFPDIENLIST 147
                 89999999.****************998.555555555555554 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 4.5e-06
     DUF3730 103 AaslrdickhrPdqngedLvdaysavLvetesqvseaqalglelleaLcsa.......e.vvd 157
                 A + ++ic++ Pd   e ++d    +L   +++++ + ++gl l+ ++c+a       e +v+
  KKY20993.1 157 ALCAMRICRKVPDL-QEHFFDKAKTLL---QDRNHGVLLCGLTLVTSMCEAdeleggeEgIVE 215
                 566699********.999*********...*********************666666655665 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.36
     DUF3730  49 asellqavalrllaklwkgmdrvfpfLrpfllfs..l 83 
                 +++ lq  +lrll +l  g+ ++++ +  +l+++   
  KKY20993.1 246 TDPFLQVKILRLLRELGRGSGETSELINDILAQVatN 282
                 5667777788888888888888888888888866322 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 1.8
     DUF3730 121 LvdaysavLvetesqvseaqalglelleaLcsa....evvdlakaw 162
                 ++++++ ++     ++++ q  +++ l a ++a    e++ la aw
  KKY20993.1 442 ILSSFVRLI----ATSPDLQTYSVQKLYAALKAditqEALTLAGAW 483
                 444444444....555666777777777766666665566666666 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.036        80      21      41 .]     110     130 ..     110     130 .. 0.85
   2 ?   -1.6   0.0       1.4   3.1e+03      13      22 ..     220     229 ..     210     234 .. 0.77
   3 ?    1.7   0.0      0.13   2.9e+02      13      36 ..     314     337 ..     314     337 .. 0.91
   4 ?   -0.6   0.0       0.7   1.6e+03      18      33 ..     356     371 ..     354     372 .. 0.88
   5 ?   -2.3   0.0       2.3   5.2e+03      10      26 ..     439     456 ..     438     458 .. 0.78
   6 ?   -3.0   0.0         4     9e+03       3      23 ..     502     522 ..     501     524 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.036
                 TTTSSHHHHHHHHHHHHHHTT CS
         Arm  21 LssedeevqeeAawALsNLaa 41 
                 L++ ++ v+  A+++L+N+a+
  KKY20993.1 110 LKHSNQYVVGLALCTLGNIAS 130
                 67788888888********96 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.4
                 HHHHHHHHTT CS
         Arm  13 avppLvrLLs 22 
                 avp Lvr L+
  KKY20993.1 220 AVPLLVRTLK 229
                 8*****9987 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.13
                 HHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm  13 avppLvrLLssedeevqeeAawAL 36 
                 +v +L ++Ls++d +++ +A+ +L
  KKY20993.1 314 GVNILGKFLSNKDNNIRYVALNTL 337
                 688999**************9887 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.7
                 HHHTTTSSHHHHHHHH CS
         Arm  18 vrLLssedeevqeeAa 33 
                 +++L+++d ++++ A+
  KKY20993.1 356 LECLRDPDISIRRRAL 371
                 689**********997 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 2.3
                 HTTHHHHHHHHTT.TSSH CS
         Arm  10 eaGavppLvrLLs.sede 26 
                 +  ++  +vrL+  s+d 
  KKY20993.1 439 KEQILSSFVRLIAtSPDL 456
                 56688899****999886 PP

  == domain 6  score: -3.0 bits;  conditional E-value: 4
                 HHHHHHHHTTHHHHHHHHTTT CS
         Arm   3 enkdavieaGavppLvrLLss 23 
                 e  ++v+e+ +v+ + + L+s
  KKY20993.1 502 ELVKEVRESDIVDLFTTILNS 522
                 56789999****999888876 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0016       3.5      90     162 ..     132     205 ..      95     229 .. 0.77
   2 ?    2.2   0.0     0.049   1.1e+02     140     196 ..     323     370 ..     292     387 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0016
     CLASP_N  90 pmveillptLlkllgdtKkiisqnanqalaallsnas.fsprilqvlsvalqdKnvqpReysaiwLkilltrfe 162
                 +m++ l+p + +l++     i+ +a+ +   ++++++ ++++ +    ++lqd+n+   ++ +++++ + +  e
  KKY20993.1 132 EMSRDLFPDIENLISTSNPYIRRKAALCAMRICRKVPdLQEHFFDKAKTLLQDRNHGVLLCGLTLVTSMCEADE 205
                 579999*******************************555555*************999999998888887666 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.049
     CLASP_N 140 qdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVReta 196
                 ++K +++R ++++ L  ++   +        +  ++ +++++ ++l D++ ++R+ a
  KKY20993.1 323 SNKDNNIRYVALNTLIKVVAVEP--------N-AVQRHRNTILECLRDPDISIRRRA 370
                 44555555555444444444444........2.345666778888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (848 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.52
# Mc/sec: 4929.99
//
Query:       KKY20994.1  [L=1333]
Description: putative abc transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-68  230.4  48.5    7.6e-37  126.8  18.7    2.7  3  ABC2_membrane    ABC-2 type transporter
      2e-38  132.0   0.1    6.8e-18   65.5   0.0    2.4  2  ABC_tran         ABC transporter
    1.2e-25   89.2   0.2    1.2e-25   89.2   0.2    2.8  1  PDR_CDR          CDR ABC transporter
    1.4e-08   35.3   0.1    3.5e-08   34.0   0.1    1.8  1  ABC_trans_N      ABC-transporter N-terminal
      3e-06   26.9   0.1    2.6e-05   23.9   0.1    2.2  2  AAA_25           AAA domain
    1.8e-05   24.0  35.6    0.00012   21.3  12.4    2.9  2  ABC2_membrane_3  ABC-2 family transporter protein
    2.2e-05   24.9   0.4    0.00097   19.6   0.2    2.4  2  AAA_16           AAA ATPase domain
      6e-05   23.0   0.2     0.0017   18.3   0.0    2.4  2  RsgA_GTPase      RsgA GTPase
    0.00014   21.8   2.4       0.27   11.0   0.1    2.8  3  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    0.00025   20.7   1.7    0.00071   19.3   0.3    2.3  2  AAA_29           P-loop containing region of AAA domain
     0.0003   21.0   0.1       0.12   12.6   0.0    2.6  2  AAA_33           AAA domain
    0.00046   20.5   0.4        0.5   10.6   0.2    2.9  2  AAA_22           AAA domain
     0.0007   20.2   0.0     0.0087   16.6   0.0    2.4  2  AAA_18           AAA domain
    0.00099   19.1   0.2       0.85    9.5   0.1    3.0  2  NACHT            NACHT domain
     0.0012   18.3   0.1        1.2    8.5   0.0    3.0  3  SMC_N            RecF/RecN/SMC N terminal domain
     0.0047   17.4   0.1        4.7    7.7   0.0    2.7  2  AAA              ATPase family associated with various cellul
     0.0099   15.6   0.1       0.97    9.1   0.1    2.5  2  AAA_30           AAA domain
  ------ inclusion threshold ------
      0.011   15.3   0.4       0.32   10.6   0.1    2.2  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.023   15.0   0.1      0.055   13.7   0.0    1.7  1  AAA_28           AAA domain
      0.023   14.8   0.0        2.6    8.1   0.1    2.5  2  MMR_HSR1         50S ribosome-binding GTPase
      0.027   15.0   0.0      0.059   13.9   0.0    1.5  1  AAA_23           AAA domain
      0.045   12.8   0.3        5.3    6.0   0.0    2.4  2  T2SSE            Type II/IV secretion system protein
      0.053   13.5   0.3        2.6    8.1   0.1    2.4  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.063   13.2   0.6         12    5.8   0.0    2.9  3  NTPase_1         NTPase
      0.079   12.3   0.1        2.3    7.5   0.0    2.2  2  DnaB_C           DnaB-like helicase C terminal domain
        0.1   13.0   0.3        1.3    9.5   0.0    2.8  3  AAA_17           AAA domain
       0.14   12.2   0.1       0.38   10.8   0.1    1.7  1  Pax2_C           Paired-box protein 2 C terminal


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.8  18.7   1.1e-39   7.6e-37       2     209 ..     459     667 ..     458     668 .. 0.97
   2 ?   -2.6   0.6       4.5     3e+03      55      65 ..     728     738 ..     712     748 .. 0.42
   3 !  115.7  14.6   2.8e-36   1.8e-33       2     186 ..    1118    1305 ..    1117    1311 .. 0.91

  Alignments for each domain:
  == domain 1  score: 126.8 bits;  conditional E-value: 1.1e-39
  ABC2_membrane   2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgn.lgnsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsay 96 
                    qi++++kr ++++w d++++ ++ +   +++al++g+++++ +++++++++   + ff++l  a++++ ++ ++   + ++++++ ++ +y++++ 
     KKY20994.1 459 QIQLCMKRAYQRIWNDKTST-ISIIGGQIIQALIVGSIYYGgTDTTASFFAKGAVAFFAMLLSALQSINEI-NSLYDQIPIVVKHNSFAFYHPWTE 552
                    9*******************.*******************84558999999999**********9999999.************************ PP

  ABC2_membrane  97 vlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsm.pkwl 189
                    ++a ++++lp+ ++ +  fl+i+yf+ gl+ +  +ff f+l+++l++l++s++++  +a ++++ +a  ++++++l + +++Gf i ++ m p w+
     KKY20994.1 553 AAAGIVADLPIKFFGSSCFLIIIYFMAGLKAEaaAFFTFFLFCFLSTLTMSAIFRTTAAATKNISQALAIGGILVLWIAVYTGFTIQRSYMhP-WF 647
                    *********************************999*******************************************************77.** PP

  ABC2_membrane 190 qwiaylnPltyavealrsnl 209
                    +w++++nP++y++e+l++n+
     KKY20994.1 648 KWLSWINPIAYGFESLLVNE 667
                    ****************9997 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.5
  ABC2_membrane  55 llffsvlflaf 65 
                    +++f ++fl++
     KKY20994.1 728 IFAFWIFFLFT 738
                    12222222222 PP

  == domain 3  score: 115.7 bits;  conditional E-value: 2.8e-36
  ABC2_membrane    2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedglnrpgllffsvlflafsaltsvapvferergvl.erelvsplysls 94  
                     q+  ++ r f+q+wr+ps++   + +  +l al++g+ f+++++++ gl+++ + +f++  ++ +++++++p f+++r+++ +re++s+ ys+s
     KKY20994.1 1118 QVSYVTHRVFQQYWRTPSYI-QNKYLLVILSALFIGFTFYKQNSTQTGLQNLIFGVFMLAATFATITQQIMPRFVIQRSLYeVRERPSKAYSWS 1210
                     88899***************.********************997777777755555555555557***************************** PP

  ABC2_membrane   95 ayvlakvlvelpvsllqalifllivyflv.gldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsm 185 
                     a+++a+v+ve+p+++l++++ ++ +y+++ g + s  + +l+ll+++ ++l+as++++l++a +p+ ++a+++++l+++++l ++G++ ++d++
     KKY20994.1 1211 AFIFANVIVEIPYQVLLGILAWAAWYYPIlGTHNSseQSGLMLLYIIEFMLLASTFAHLVIAALPDSKTAGTVSTLLFSMTLTFCGVLQSPDAL 1304
                     ***********************8888763666668666999***************************************************9 PP

  ABC2_membrane  186 p 186 
                     p
     KKY20994.1 1305 P 1305
                     8 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0     1e-20   6.8e-18       1     134 [.     134     290 ..     134     293 .. 0.94
   2 !   64.3   0.0   2.4e-20   1.6e-17       1     137 []     824     975 ..     824     975 .. 0.93

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 1e-20
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SE..EEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpte..Geilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................. 79 
                 lkn++ +++ ge++ ++G+ GaG++t+lk ++g+l++ +  Ge+++dg   k+  l++++ e+++ ++++++fp+ltv+e+                  
  KKY20994.1 134 LKNLNGSVQSGEMLIVLGRPGAGCTTFLKSVCGELQDISlfGEVKYDGVTQKD-FLKEFKGEVAYNQETEEHFPHLTVGETlefaaacrtphrrimnvs 231
                 79**********************************95555******988888.9***************************************99888 PP

                 ...HHHTCHHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEES CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ...esdeeiekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDE 134
                    + + +++ +l+ +gl+++k+t+v+++  + +SgG+++rv++ ++ l  +++  +D+
  KKY20994.1 232 rqvAIQHKVAVVLRIFGLTHTKNTKVGNDFiRGVSGGERKRVSISEMALAGSPICAWDN 290
                 88777778******************99999*********************9999997 PP

  == domain 2  score: 64.3 bits;  conditional E-value: 2.4e-20
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................es 81 
                 l+nvs  +k+g+++a++G +GaGK+tLl +l++  +     G++l++g+ l+     s++++ g+++q++ + +++tvre                 e+
  KKY20994.1 824 LDNVSGWVKPGTLTALMGTSGAGKTTLLDALSQRISVgiLTGDMLVNGRALDA----SFQRKTGYVQQQDLHLETTTVREAlqfsallrqpdsvsrrEK 918
                 79********************************99988999*********99....************99999999************9998765555 PP

                 HTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEE.EESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
    ABC_tran  82 deeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpklll.lDEpta 137
                  + +ek++  lg+++++d +v+  +s L   q++ + +   l+ kp lll lDEpt+
  KKY20994.1 919 LDYAEKVIGLLGMQNFADAIVGVPGSGLNVEQRKLLTIGVELAAKPALLLfLDEPTS 975
                 555****************************************999986549***96 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.2   1.8e-28   1.2e-25       7      88 ..     684     763 ..     679     767 .. 0.94

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 1.8e-28
     PDR_CDR   7 yenvseenrvCavvGavpGqeyVsGddYlelsfgyssshlwrnfgiliaflifflalyllatelisaekskgevlvfkrgka 88 
                 y   ++ + +Ca++Gav+G+++VsGd+++e+++gys+sh+wrn+g ++af+iffl++ylla+e++s   s+++vlv++rg +
  KKY20994.1 684 YG--QNGHFACAIAGAVQGENVVSGDNWVESAYGYSYSHIWRNLGFIFAFWIFFLFTYLLASEFNSRGGSSADVLVYQRGAK 763
                 55..57889**********************************************************************986 PP

>> ABC_trans_N  ABC-transporter N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.1   5.2e-11   3.5e-08      17      80 ..      38     114 ..      22     115 .. 0.71

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 5.2e-11
  ABC_trans_N  17 sss...........e....sssedeeeedseFdlekwlknlreridrdgikprklGVvFknLtVeGvgsgadyqpTvgn 80 
                   s+           e    ++  +++++   F++  w+++++ + +++g+++ + G +Fk+L V G gs+++ q+Tv++
   KKY20994.1  38 ISRtlslstrnllpEvsihDPRLNPSNDA--FEFILWAQKFMSLLEQEGHQLQRSGFTFKDLHVTGHGSTLKWQETVFS 114
                  22234454444443133345555555555..**********************************************87 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.88   5.8e+02      27      54 ..     138     165 ..     117     178 .. 0.82
   2 !   23.9   0.1   3.9e-08   2.6e-05      12      60 ..     813     861 ..     802     882 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.88
      AAA_25  27 kgllpagelallaGapgtGKttlaldla 54 
                  g +  ge  ++ G+pg+G tt++ +++
  KKY20994.1 138 NGSVQSGEMLIVLGRPGAGCTTFLKSVC 165
                 5667899***************987665 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 3.9e-08
      AAA_25  12 vadlaapppprrwlvkgllpagelallaGapgtGKttlaldlalavatG 60 
                 + +++ +p+++ + v g++  g+l++l+G +g+GKttl+  l+  ++ G
  KKY20994.1 813 DIKIKGEPRRLLDNVSGWVKPGTLTALMGTSGAGKTTLLDALSQRISVG 861
                 567899*********************************9999888755 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3  12.4   1.9e-07   0.00012     219     341 ..     569     737 ..     497     741 .. 0.81
   2 !    7.5  14.6    0.0029       1.9     144     295 ..    1150    1306 ..    1127    1317 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.9e-07
  ABC2_membrane_3 219 lqlllilllafglgipfg..nlglllllfllfglayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsiiPffapg 310
                       ++l+i++++ g  +  +   ++ ++l+ +l  l+++a++    +++kn + a ++ +i+ l + ++ g+++  + ++ ++kw+++i+P+ + +
       KKY20994.1 569 SCFLIIIYFMAG--LKAEaaAFFTFFLFCFLSTLTMSAIFRTTAAATKNISQALAIGGILVLWIAVYTGFTIQRSYMHPWFKWLSWINPIAYGF 660
                      455666668999..66665477777799999999999999999999*******99988887745555555566999****************99 PP

  ABC2_membrane_3 311 lgllrl.itgdplwe................................................illsliilalfavvyll 341
                      ++ll   + g                                                     i+++l++ ++f +++l 
       KKY20994.1 661 ESLLVNeVHGR---HfpcastslvppygqnghfacaiagavqgenvvsgdnwvesaygysyshIWRNLGFIFAFWIFFLF 737
                      98843334433...1346777777788888889999999999999999999999999999999********999999975 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0029
  ABC2_membrane_3  144 ninvestqleeelsnvasflvg..liliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilg....dflvyllqlllilllaf 229 
                        i+++ +  ++ +++ ++ ++g  ++++ +++it +++ +++++     ++e+  +   s +++++++++      +l+++l ++ + + ++
       KKY20994.1 1150 FIGFTFYKQNSTQTGLQNLIFGvfMLAATFATITQQIMPRFVIQRSLYEVRERP-SKAYSWSAFIFANVIVeipyQVLLGILAWAAWYYPIL 1240
                       556666666777899999999953333444555555566666655555677765.4447778888888777111144555555555554377 PP

  ABC2_membrane_3  230 glgipfgnlglllllfllfglayialgyllsslfknsetaqilifivilllsgffgglfpledlps 295 
                       g+  + +++gl+ll+++ f+l+++++++l+ ++  +s+ta ++ ++++++++ f+g+l + ++lp+
       KKY20994.1 1241 GTHNSSEQSGLMLLYIIEFMLLASTFAHLVIAALPDSKTAGTVSTLLFSMTLTFCGVLQSPDALPG 1306
                       7334455**************************999999999988888889999999988777774 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0       0.2   1.3e+02      17      50 ..     139     170 ..     127     263 .. 0.80
   2 !   19.6   0.2   1.5e-06   0.00097      10     143 ..     821     972 ..     817    1003 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.2
      AAA_16  17 ervrsgrpelvllsGesGvGKsslvrellralek 50 
                 ++v sg  e++++ G +G G ++ ++++  +l++
  KKY20994.1 139 GSVQSG--EMLIVLGRPGAGCTTFLKSVCGELQD 170
                 456555..89**************9998766654 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 1.5e-06
      AAA_16  10 eqLlsalervrsgrpelvllsGesGvGKsslvrellralekd.............ggiflrgkcdqlesaipy..salaqalareellrqlldeaesae 93 
                 ++Ll+ ++ + +++  l+ l G sG GK++l+++l ++++               ++ f r +    ++++++   ++ +al ++ llrq ++ ++  e
  KKY20994.1 821 RRLLDNVSGWVKPG-TLTALMGTSGAGKTTLLDALSQRISVGiltgdmlvngralDASFQRKTGYVQQQDLHLetTTVREALQFSALLRQPDSVSRR-E 917
                 57777788777777.6999******************888776666666644444333333333333555555634488888777777777777555.5 PP

      AAA_16  94 leawrekleeala......avpelagaeasrllellkrllallsrderplvlvlDd 143
                   +++ek  + l+      a+  ++g++ +   ++l  + + l+  ++ l+l+lD+
  KKY20994.1 918 KLDYAEKVIGLLGmqnfadAIVGVPGSGLNVEQRKLLTIGVELAA-KPALLLFLDE 972
                 555555566666678888877777777777777777777744444.3449999996 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.29   1.9e+02      91     123 ..     135     168 ..     125     181 .. 0.82
   2 !   18.3   0.0   2.5e-06    0.0017      88     132 ..     822     887 ..     793     906 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.29
                  HHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  91 eelkellkd.ktsvlvGqSGvGKStLinallpel 123
                  ++l+  +++ ++ +++G  G+G +t+++++ +el
   KKY20994.1 135 KNLNGSVQSgEMLIVLGRPGAGCTTFLKSVCGEL 168
                  566666666699****************999975 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 2.5e-06
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT....................-----S---- CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallpe....................lelktgevse 132
                  + l++++ ++k   +++l+G SG+GK+tL++al ++                     + ktg v++
   KKY20994.1 822 RLLDNVSGWVKPgTLTALMGTSGAGKTTLLDALSQRisvgiltgdmlvngraldasFQRKTGYVQQ 887
                  556778888887799******************998666666666666666666554555555554 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   0.00041      0.27       1      21 [.     836     856 ..     836     921 .. 0.79
   2 !    9.9   0.0   0.00086      0.57     256     299 ..     963    1006 ..     949    1009 .. 0.77
   3 ?   -3.0   0.1       7.4   4.9e+03      86     152 ..    1061    1127 ..    1053    1140 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00041
      AAA_21   1 lnvliGpNgsGKSnLLdaldl 21 
                 l++l G  g+GK++LLdal+ 
  KKY20994.1 836 LTALMGTSGAGKTTLLDALSQ 856
                 69999**************63 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00086
      AAA_21  256 kkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSp 299 
                  k++ ll++DEp +gL+ +   +++++l++l++ng  v++t H+p
  KKY20994.1  963 KPALLLFLDEPTSGLDSQSSWSIVTFLRKLADNGQAVLCTIHQP 1006
                  34489**********************99999454456666776 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 7.4
      AAA_21   86 klssvetllesgllldkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsraw 152 
                   l +v+++ ++ +    ++   + ++  e ++ +++++++  ++++  +++++   ++  ++t+r +
  KKY20994.1 1061 ILRVVGKNDQRDWHETWKASSNFEDVQRELERLHALKTGENTATSESHSEFAMPLLSQVSYVTHRVF 1127
                  5666777777788888888888888888888999999999999888888888888888888888765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       1.9   1.3e+03      22      39 ..     143     161 ..     137     164 .. 0.81
   2 !   19.3   0.3   1.1e-06   0.00071      22      43 ..     834     855 ..     824     859 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
      AAA_29  22 kg.atlltGpsGsGKSTll 39 
                 +g + ++ G+ G+G +T+l
  KKY20994.1 143 SGeMLIVLGRPGAGCTTFL 161
                 34478899*******9997 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 1.1e-06
      AAA_29  22 kgatlltGpsGsGKSTllDAiq 43 
                    t l+G+sG+GK+TllDA++
  KKY20994.1 834 GTLTALMGTSGAGKTTLLDALS 855
                 44899***************96 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.022        15       1      39 [.     146     193 ..     146     251 .. 0.68
   2 !   12.6   0.0   0.00018      0.12       2      78 ..     837     910 ..     836     945 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.022
      AAA_33   1 lvllvGlpGsGKstlaerllkklg.........avllssdtlrrrlfg 39 
                 ++++ G pG+G +t++++++ +l+         +  +++ ++++  +g
  KKY20994.1 146 MLIVLGRPGAGCTTFLKSVCGELQdislfgevkYDGVTQKDFLKEFKG 193
                 57899*****************99766666666666666666666655 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00018
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrr.rlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildat 78 
                 + l G +G+GK+tl++ l ++  + +l+ d l + r      q+kt y +  d       e+ + + +  ++++l+++
  KKY20994.1 837 TALMGTSGAGKTTLLDALSQRISVGILTGDMLVNgRALDASFQRKTGYVQQQDLHL----ETTTVREALQFSALLRQP 910
                 5689****************999999999999987777777788887777554433....333445555666666666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.012       7.8       4      69 ..     143     200 ..     140     230 .. 0.84
   2 !   10.6   0.2   0.00075       0.5       5      29 ..     834     858 ..     831    1008 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.012
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.sskdllrellralglelk 69 
                 +  +l+v G +G+G Tt l+ +  +l         ++  +f +++ ++ ++kd+l+e+  ++  +++
  KKY20994.1 143 SGEMLIVLGRPGAGCTTFLKSVCGEL---------QDISLFGEVKYDGvTQKDFLKEFKGEVAYNQE 200
                 56799*********************.........889999999999999***99999988874444 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00075
      AAA_22   5 agilvvtGesGtGKTtllrrlleql 29 
                  ++++++G sG+GKTtll  l ++ 
  KKY20994.1 834 GTLTALMGTSGAGKTTLLDALSQRI 858
                 57899*************9998876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       1.5     1e+03       2      36 ..     148     192 ..     147     225 .. 0.69
   2 !   16.6   0.0   1.3e-05    0.0087       3      48 ..     839     882 ..     838     913 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.5
      AAA_18   2 lltGtpGvGKttlakeLskrl.gf.........gvnlrdvakeng 36 
                 ++ G pG+G tt+ k +  +l  +         gv  +d +ke  
  KKY20994.1 148 IVLGRPGAGCTTFLKSVCGELqDIslfgevkydGVTQKDFLKEFK 192
                 789*********998884443344566555555555555555544 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.3e-05
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealde 48 
                 l+Gt+G+GKttl ++Ls+r  +g+  +d++ +++ l+  ++   + 
  KKY20994.1 839 LMGTSGAGKTTLLDALSQRISVGILTGDMLVNGRALDASFQR--KT 882
                 89*****************87799999988888887777777..44 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.013       8.6       2      31 ..     146     175 ..     145     179 .. 0.86
   2 !    9.5   0.1    0.0013      0.85       3      31 ..     837     865 ..     835     893 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.013
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpq 31 
                 ++i+ G++G G Tt+l++++ ++++  l++
  KKY20994.1 146 MLIVLGRPGAGCTTFLKSVCGELQDISLFG 175
                 589*****************9998876665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0013
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpq 31 
                  +l G +G GKTtLl  l + +  g l +
  KKY20994.1 837 TALMGTSGAGKTTLLDALSQRISVGILTG 865
                 6799**************99988776665 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.1   7.4e+02     135     187 ..     252     311 ..      93     335 .. 0.70
   2 ?    5.6   0.0     0.014       9.6      26      45 ..     836     855 ..     825     861 .. 0.88
   3 !    8.5   0.0    0.0018       1.2     155     201 ..     961    1007 ..     950    1023 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.1
                 T...........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHC CS
                 x...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e...........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeks 187
                 +             SgGe++ v+++ +    +   +p++  D+    LD +   ++ + l++ s
  KKY20994.1 252 TkntkvgndfirGVSGGERKRVSISEM----ALAGSPICAWDNSSRGLDSATALEFIQSLRTFS 311
                 355555555555678999888887754....556789999999999999888888877777555 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.014
                 EEEEEESTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAil 45 
                 +ta++G  G+GK+ lldA++
  KKY20994.1 836 LTALMGTSGAGKTTLLDALS 855
                 799***************96 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0018
                  CCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  155 kvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreem 201 
                  ++kpa l +lDe  + LD +    ++++l++  +n Q +  ++++  
  KKY20994.1  961 AAKPALLLFLDEPTSGLDSQSSWSIVTFLRKLADNGQAVLCTIHQPS 1007
                  478999*******************************9999998765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0     0.007       4.7       2      37 ..     148     185 ..     147     211 .. 0.70
   2 ?    6.7   0.0     0.014       9.4       3      26 ..     839     862 ..     837     894 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.007
                 EEESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSS CS
         AAA   2 llyGppGtGKTllakavakelg..vefleisgsellsk 37 
                 ++ G pG G T++ k+v+ el+  + f e++   +++k
  KKY20994.1 148 IVLGRPGAGCTTFLKSVCGELQdiSLFGEVKYDGVTQK 185
                 789*****************976544566666666644 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.014
                 EESSTTSSHHHHHHHHHHHHTHEE CS
         AAA   3 lyGppGtGKTllakavakelgvef 26 
                 l+G+ G GKT+l  a+ + ++v +
  KKY20994.1 839 LMGTSGAGKTTLLDALSQRISVGI 862
                 89***************9987654 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.07        46      15      38 ..     142     164 ..     136     172 .. 0.85
   2 !    9.1   0.1    0.0015      0.97      19      43 ..     835     859 ..     827     945 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.07
      AAA_30  15 tsgdrvavltGpAGtGKttalkal 38 
                 +sg+ + ++ G++G+G tt lk++
  KKY20994.1 142 QSGE-MLIVLGRPGAGCTTFLKSV 164
                 5665.99**************987 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0015
      AAA_30  19 rvavltGpAGtGKttalkalreawe 43 
                  +++l G  G+GKtt+l al + + 
  KKY20994.1 835 TLTALMGTSGAGKTTLLDALSQRIS 859
                 58999**************987654 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.13        87       3      23 ..     147     167 ..     145     174 .. 0.82
   2 ?   10.6   0.1   0.00048      0.32       3      37 ..     837     868 ..     835     892 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.13
                 EEEEESTTCCHHHHHHHHHCT CS
        cobW   3 tvltGflGsGKTtLlnhllen 23 
                 +++ G +G+G Tt+l++++ +
  KKY20994.1 147 LIVLGRPGAGCTTFLKSVCGE 167
                 7899************99944 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00048
                 EEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-S CS
        cobW   3 tvltGflGsGKTtLlnhllenraglklavivNefg 37 
                 t l G  G+GKTtLl +l ++    ++ ++++++ 
  KKY20994.1 837 TALMGTSGAGKTTLLDALSQR---ISVGILTGDML 868
                 7899************99876...88999999886 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   8.3e-05     0.055       3      23 ..     838     861 ..     836     911 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.3e-05
      AAA_28   3 vitGgestGKTtlleaLaar...g 23 
                 +++G++++GKTtll aL++r   g
  KKY20994.1 838 ALMGTSGAGKTTLLDALSQRisvG 861
                 799***************986664 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.077        51       3      34 ..     148     184 ..     146     200 .. 0.72
   2 ?    8.1   0.1     0.004       2.6       3      22 ..     838     857 ..     836     883 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.077
                 EEEESTTSSHHHHHHHHHTS.....TEEESSSTTSSS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge.....kaivsdkpgtTr 34 
                 +++Grp +G +t++++ +ge          ++ g+T+
  KKY20994.1 148 IVLGRPGAGCTTFLKSVCGElqdisLFGEVKYDGVTQ 184
                 799***************9743311223345556665 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.004
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 a++G + +GK+tL+ al+++
  KKY20994.1 838 ALMGTSGAGKTTLLDALSQR 857
                 89***************987 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   8.9e-05     0.059      21      40 ..     836     855 ..     806     888 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.9e-05
      AAA_23  21 ltlItGpNGaGKTTildAik 40 
                 lt++ G  GaGKTT+ldA+ 
  KKY20994.1 836 LTALMGTSGAGKTTLLDALS 855
                 899***************96 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0079       5.3     115     154 ..     130     169 ..      90     173 .. 0.85
   2 ?    4.2   0.1     0.029        19     134     154 ..     839     859 ..     810     868 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0079
       T2SSE 115 kekiaevlrkavrerglilvsGgTgsGKttllyallkein 154
                 ++ i + l+ +v++  +++v G  g G tt+l ++  e++
  KKY20994.1 130 EKVILKNLNGSVQSGEMLIVLGRPGAGCTTFLKSVCGELQ 169
                 47788999*************************9998887 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.029
       T2SSE 134 vsGgTgsGKttllyallkein 154
                 + G+ g GKttll al + i 
  KKY20994.1 839 LMGTSGAGKTTLLDALSQRIS 859
                 5799************99875 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.15     1e+02      18      43 ..     141     168 ..     125     177 .. 0.78
   2 ?    8.1   0.1    0.0039       2.6      19      44 ..     834     859 ..     819     865 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.15
                 H..TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  18 l..gdvilLeGdLGaGKTtlvrglakal 43 
                 +  g++++  G  GaG Tt+ ++++ +l
  KKY20994.1 141 VqsGEMLIVLGRPGAGCTTFLKSVCGEL 168
                 2447789999*************99877 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0039
                 TEEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalg 44 
                 g++ +L G  GaGKTtl  +l + + 
  KKY20994.1 834 GTLTALMGTSGAGKTTLLDALSQRIS 859
                 56789*************99998875 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.018        12       2      26 ..     147     171 ..     146     194 .. 0.76
   2 ?    4.0   0.1     0.063        42       4      23 ..     839     858 ..     837     874 .. 0.80
   3 ?   -1.2   0.0       2.5   1.6e+03     115     141 ..     986    1011 ..     980    1018 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.018
                 EEEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkss 26 
                 +++ G+pG G tT++k v+ +l++ 
  KKY20994.1 147 LIVLGRPGAGCTTFLKSVCGELQDI 171
                 5788******************864 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.063
                 EE--TTSSHHHHHHHHHHHH CS
    NTPase_1   4 iTGppGvGKtTlvkkvlell 23 
                 + G +G GKtTl++ +++ +
  KKY20994.1 839 LMGTSGAGKTTLLDALSQRI 858
                 6799*********9999988 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.5
                  HHHHHHHHTTTSEEEEE--SS--SHHH CS
    NTPase_1  115 keaveevLksekpvlavihrrkdlalv 141 
                   + ++++ ++++ vl +ih+++   l 
  KKY20994.1  986 VTFLRKLADNGQAVLCTIHQPS-ALLF 1011
                  567888999***********94.3444 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0034       2.3      10      40 ..     135     165 ..     132     175 .. 0.86
   2 ?    2.2   0.0      0.14        95       9      44 ..     824     859 ..     821     891 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0034
                 HHHCTSBXTTXEEEEEEXTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  10 DkltsGlqkgdliiiAarpsmGktalalnia 40 
                  +l + +q+g+++i+ +rp+ G t++  +++
  KKY20994.1 135 KNLNGSVQSGEMLIVLGRPGAGCTTFLKSVC 165
                 5677889*******************98776 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.14
                 HHHHCTSBXTTXEEEEEEXTTSSHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C   9 LDkltsGlqkgdliiiAarpsmGktalalniaenaa 44 
                 LD++ + +++g+l+ + + ++ Gkt+l   + +++ 
  KKY20994.1 824 LDNVSGWVKPGTLTALMGTSGAGKTTLLDALSQRIS 859
                 788888889*****************9988877665 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.5   1.6e+03       1      19 [.     150     168 ..     150     177 .. 0.84
   2 ?   -2.1   0.0       7.1   4.7e+03       8      34 ..     192     218 ..     192     242 .. 0.73
   3 ?    9.5   0.0    0.0019       1.3       2      32 ..     841     870 ..     840     904 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.5
                 EE-TTSSHHHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklveky 19 
                 lG PG+G +t ++ +  ++
  KKY20994.1 150 LGRPGAGCTTFLKSVCGEL 168
                 699*********9887665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 7.1
                 HHHHHHHHHHHHTEEEEEHHHHHHHHH CS
      AAA_17   8 KgtqceklvekygfthlsaGdllreea 34 
                 Kg+++ +   + +f+hl+ G+ l   a
  KKY20994.1 192 KGEVAYNQETEEHFPHLTVGETLEFAA 218
                 7888888888899*******9986443 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0019
                 E-TTSSHHHHHHHHHHHHTEEEEEHHHHHHH CS
      AAA_17   2 GgPGsGKgtqceklvekygfthlsaGdllre 32 
                 G  G+GK+t+++ l +++ + +l+ Gd+l +
  KKY20994.1 841 GTSGAGKTTLLDALSQRISVGILT-GDMLVN 870
                 999*****************9998.999974 PP

>> Pax2_C  Paired-box protein 2 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00057      0.38      42      82 ..     681     723 ..     666     739 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00057
      Pax2_C  42 vPptgqgsystsalaGmvpgse.ysgnpyshpqys.syneawr 82 
                 vPp gq  + + a+aG v g++  sg+ + +++y+ sy+  wr
  KKY20994.1 681 VPPYGQNGHFACAIAGAVQGENvVSGDNWVESAYGySYSHIWR 723
                 9*****************9987369*****9999757999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       971  (0.0541581); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 1.05u 0.32s 00:00:01.37 Elapsed: 00:00:00.49
# Mc/sec: 8112.26
//
Query:       KKY20995.1  [L=415]
Description: putative lipoic acid synthetase precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-23   82.3   0.0      6e-23   81.3   0.0    1.5  1  LIAS_N       N-terminal domain of lipoyl synthase of Radical_
      2e-14   54.3   0.0      3e-14   53.7   0.0    1.3  1  Radical_SAM  Radical SAM superfamily


Domain annotation for each model (and alignments):
>> LIAS_N  N-terminal domain of lipoyl synthase of Radical_SAM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   6.7e-27     6e-23      28     108 .]      52     138 ..      26     138 .. 0.89

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 6.7e-27
      LIAS_N  28 ltdekkelleeGPdlqDFvsgdkedk...seweeykgnlkrekge...rlrLPswlktkiPlGknynkikndlreLnLhtvCeeaRC 108
                 ++ ++ + l+ GP++ DFv g +e     se++ +k  l+ +kg+     rLP+wlkt iP G++ + ik dlr+LnLhtvCeeaRC
  KKY20995.1  52 RPTKFTDKLNAGPSFADFVGGGNEAPldpSEAYALKTALVGPKGKqkqITRLPEWLKTPIPDGTSVQNIKRDLRGLNLHTVCEEARC 138
                 56788899************998866666**************99765469************************************ PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   3.4e-18     3e-14       5     167 .]     161     322 ..     157     322 .. 0.88

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 3.4e-18
                  SEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC....CCTEEEEEEECSSCHGHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   5 rgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlakla....vpgiritvetngtlpdeeklerll 98 
                    C+++C+fC++++     ++++ l++ e ++ ++++  ++g+++v+l++ + ++ +d     +++   +     pg+ + + t  +  d e++++ +
   KKY20995.1 161 DTCTRGCRFCSVKT----SRTPKPLDPHEPEHTAEAI-SRWGIGYVVLTSVDRDDLADGGAHHFAETVMKikskAPGMLVECLTGDYAGDLEMVALVA 253
                  67***********5....8******************.599********99999995555555544444444556*********************** PP

                  HTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET..EEEEEEEBTTTSHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  99 elgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikr..vvdrivglpGendeeleellell 167
                  + g+d+++++ e++    + +   r+  + + l++l+++++a  +   +++ ++++ Ge+++el+++l++l
   KKY20995.1 254 KSGLDVYAHNMETVEAL-TPQVRDRRAKYRQSLAVLKAAKAA-QPTliTKTSLMLGLGETEAELWQTLRDL 322
                  ***************97.55555599*************999.89999*******************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2916.55
//
Query:       KKY20996.1  [L=603]
Description: putative siroheme synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.8e-46  156.4   0.0    1.9e-45  155.4   0.0    1.5  1  TP_methylase    Tetrapyrrole (Corrin/Porphyrin) Methylases
    1.1e-12   48.3   0.0    2.1e-12   47.4   0.0    1.5  1  NAD_binding_7   Putative NAD(P)-binding
    1.5e-11   43.8   0.0    3.3e-07   29.8   0.0    2.4  2  Sirohm_synth_C  Sirohaem biosynthesis protein C-terminal
    9.6e-10   37.7   0.5    9.6e-10   37.7   0.5    2.3  2  Sirohm_synth_M  Sirohaem biosynthesis protein central


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.4   0.0   4.2e-49   1.9e-45       1     212 [.     281     516 ..     281     517 .. 0.93

  Alignments for each domain:
  == domain 1  score: 155.4 bits;  conditional E-value: 4.2e-49
  TP_methylase   1 klylVGvGpGdpellTvrAlralktadvvlgddsraleilldllaeel.eleapmgkekepleeayeeiaealaealragkdVvllvsGDPlvygtg 96 
                   k++l+G GpG+p+llT ++ +a+k+ad++l+d+ ++++ +ldl+++++ ++ a++++   ++++a+ee  ++  ea+r+gk V++l++GDP++yg+g
    KKY20996.1 281 KVTLAGSGPGHPDLLTRATFKAIKSADLILADK-LVPAPVLDLIPRRTpVHIARKFPG--NADAAQEELLSMGLEAARQGKHVLRLKQGDPYLYGRG 374
                   799***************************999.*************99999999999..9999********************************* PP

  TP_methylase  97 selvealrareagieveviPGvsslqaaaarlgiplteggevlsvl.....lpglakeeereleallangdtlvllkaprklaelaelL........ 180
                   +e++ +++   +g+   v+PG++s+ +a+ ++ ip+t++ ++ +vl      ++ a++++  +++     +t+v+l+a+++l++l++ L        
    KKY20996.1 375 AEEFAFFES--HGFAPSVLPGITSAFSAPLFAAIPPTHRAVSDQVLvctgtGRKGAAPSPPSYNK----SQTVVFLMALHRLESLVTSLtnpvsinp 465
                   ****99999..************************************777733335566667766....6*************************** PP

  TP_methylase 181 ...................kea.lyddttpvavveragtedervvrgtleel 212
                                        + ++++t p+a++era+++d+rv+r+tle++
    KKY20996.1 466 epkagvlsndstitanttpGFHpWPKET-PCAIIERASCPDQRVIRTTLEHA 516
                   **************98876444888855.********************975 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   4.7e-16   2.1e-12       3     101 ..       9     126 ..       7     129 .. 0.79

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 4.7e-16
  NAD_binding_7   3 ldlkgkkvlvvGgGevAarkvrklleagakvtvvapev........keeleelvklaeeelekd.........leg.ad.lviaatddrelneria 79 
                    ld+ g+  l+ G G++Aa ++ k +e ga+ +v++           k++ +++vk++ ++++++         ++  +d + ++a +   l +r+ 
     KKY20996.1   9 LDCVGQIHLILGSGPIAAARAAKSIEVGATPIVISSSGsdvhytlaKRIEDGQVKHIIRDFQDQdlgtlgreeVDCvVDaVFVTASSGSTLGDRVS 104
                    67778889***************************99666665554444459999999999644466655444222333466788899******** PP

  NAD_binding_7  80 eaakarrilvnvadkpelcdfi 101
                    +++++ ri+vnvad p+lc+f 
     KKY20996.1 105 KLCRRMRIPVNVADAPNLCTFS 126
                    ********************96 PP

>> Sirohm_synth_C  Sirohaem biosynthesis protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   4.1e-05      0.18       1      20 [.     162     181 ..     162     191 .. 0.86
   2 !   29.8   0.0   7.4e-11   3.3e-07      27      65 ..     222     260 ..     211     263 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.1e-05
  Sirohm_synth_C   1 PdnlgaAiekvgkLRkkLRe 20 
                     P n+g+Aie++g+LR+++ e
      KKY20996.1 162 PPNFGEAIERLGNLRRRIIE 181
                     789*************9865 PP

  == domain 2  score: 29.8 bits;  conditional E-value: 7.4e-11
  Sirohm_synth_C  27 egpkRMkWmskvcdswsleelaeldeedmekLlemyekg 65 
                       ++RM+W+s++c+ w l +la++++ d  ++l+ y + 
      KKY20996.1 222 ARNRRMRWLSQICEYWPLSRLASINDADAAAILSAYTSA 260
                     4567*****************************999875 PP

>> Sirohm_synth_M  Sirohaem biosynthesis protein central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   1.7         3   1.4e+04       6      12 ..      40      46 ..      40      47 .. 0.86
   2 !   37.7   0.5   2.2e-13   9.6e-10       1      27 [.     133     159 ..     133     160 .. 0.96

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 3
  Sirohm_synth_M  6 IaiSTnG 12
                    I iS+ G
      KKY20996.1 40 IVISSSG 46
                    78***99 PP

  == domain 2  score: 37.7 bits;  conditional E-value: 2.2e-13
  Sirohm_synth_M   1 rGpLQIaiSTnGksPrLAaliRreier 27 
                     +GpLQI i+T G +++L+++iRrei++
      KKY20996.1 133 DGPLQIGITTSGRGCKLSSRIRREIAS 159
                     8************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 3782.23
//
Query:       KKY20997.1  [L=249]
Description: hypothetical protein UCRPC4_g03914 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1686.40
//
Query:       KKY20998.1  [L=241]
Description: putative ubiquinone biosynthesis protein mitochondrial precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-57  192.0   0.0    3.7e-49  167.1   0.0    2.0  2  Coq4      Coenzyme Q (ubiquinone) biosynthesis protein Coq4


Domain annotation for each model (and alignments):
>> Coq4  Coenzyme Q (ubiquinone) biosynthesis protein Coq4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.1   0.0     2e-53   3.7e-49      52     177 ..       1     128 [.       1     132 [. 0.95
   2 !   23.1   0.0   2.1e-09   3.8e-05     181     217 ..     172     213 ..     166     217 .. 0.85

  Alignments for each domain:
  == domain 1  score: 167.1 bits;  conditional E-value: 2e-53
        Coq4  52 mlsdeeGrriLkerpritsetldleklkklpentlGraYakflekenvspdtRapvryiddeelaYvmqRyrevHDflHvll...glptnvegEiavka 147
                 mls+++Gr+iL+erpri+s+t+dl++l++lpe+t+G+ Y+++l++e+v+pdtR+pvr+i d+elaYv+qRyre HD++Hvll   g+p  +egE++vka
  KKY20998.1   1 MLSSPSGRQILRERPRISSQTVDLDYLRTLPETTFGKIYVTWLDREHVTPDTRDPVRHIPDPELAYVLQRYRESHDLFHVLLaekGMPSFLEGEVVVKA 99 
                 99*******************************************************************************84446************* PP

        Coq4 148 fefaqtglpmallsalfgplrlsskererl 177
                 fefa +glpm++l+ ++++++l +++r+r+
  KKY20998.1 100 FEFAALGLPMTGLA-ALSAVKLPKEQRRRV 128
                 *************9.677899999998875 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 2.1e-09
        Coq4 181 ylpwalragkkak.....ellnvywEeeletdleelrkelgi 217
                 ++ wa+++g + +      lln+ywE+e+et++ elr++lg 
  KKY20998.1 172 WITWAISQGLNTNtspsgGLLNMYWEKEWETPILELRERLGT 213
                 889******99985555557*******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1707.39
//
Query:       KKY20999.1  [L=259]
Description: hypothetical protein UCRPC4_g03916 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 1638.34
//
Query:       KKY21000.1  [L=147]
Description: putative dsdna-binding protein pdcd5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-34  118.7   6.8      2e-34  118.2   6.8    1.2  1  dsDNA_bind      Double-stranded DNA-binding domain
     0.0017   18.3   0.3     0.0023   17.9   0.3    1.2  1  Serglycin       Serglycin
     0.0049   17.2   0.1     0.0087   16.4   0.1    1.6  1  GHMP_kinases_C  GHMP kinases C terminal
  ------ inclusion threshold ------
       0.73    9.5   5.7       0.27   10.9   1.4    1.9  2  Med4            Vitamin-D-receptor interacting Mediator subun
        1.4    9.4   0.1        1.4    9.4   0.1    3.9  4  EF-1_beta_acid  Eukaryotic elongation factor 1 beta central a


Domain annotation for each model (and alignments):
>> dsDNA_bind  Double-stranded DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   6.8   5.5e-38     2e-34       1     101 [.       9     107 ..       9     110 .. 0.90

  Alignments for each domain:
  == domain 1  score: 118.2 bits;  conditional E-value: 5.5e-38
                 XXXXXXXXXXXXXXXXXXXX...XXXX--SS..S--SSHHHHTTS--HHHHHHHHHHTTT-HHHHHHHHHHHHHHHH--SS-----HHHHHHHHHHHS- CS
  dsDNA_bind   1 irkarlaelqaqagsssgsggaseqqeqqqeaseeeakqaiLsqiLepeAreRLsrirlvkperaeavenrLiqlaqsGqlrskvteeqLkeLLeqvae 99 
                 ir+arla+lq+   +++g +g+ ++++q  +++ +e++q+iL qiL+peA +RL+rirlvk  ra++venrLiqlaq+Gqlr+kvte+qLkeLL++++ 
  KKY21000.1   9 IRAARLAQLQQGRAQGGGPTGGDDEEAQ--RERISEQRQSILLQILHPEALDRLNRIRLVKASRATDVENRLIQLAQTGQLREKVTEDQLKELLSAISA 105
                 9**********99888876654444444..446****************************************************************98 PP

                 -- CS
  dsDNA_bind 100 kk 101
                 ++
  KKY21000.1 106 NE 107
                 65 PP

>> Serglycin  Serglycin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.3   6.4e-07    0.0023      78     111 ..      93     127 ..      70     142 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 6.4e-07
   Serglycin  78 sqnlndvfp.lsedysgsgsGsGsGsGsgsgsgfl 111
                   +l+++++ +s +  g gsG+GsGsGsg+g ++ 
  KKY21000.1  93 EDQLKELLSaISANEGGGGSGTGSGSGSGAGIEYR 127
                 34566665514455566777777777777776665 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   2.4e-06    0.0087      17      67 ..      82     134 ..      55     147 .] 0.74

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.4e-06
  GHMP_kinases_C  17 lnlsqrs.elkavvgilppeleellealselGalgaklsGaGgGptvfalf.......k 67 
                     +       +l  + ++  + l+ell+a+s++   g++ +G+G+G+   + +       +
      KKY21000.1  82 AQ----TgQL--REKVTEDQLKELLSAISANEGGGGSGTGSGSGSGAGIEYrgrrkggW 134
                     22....2466..99999***************999999999999877776665555552 PP

>> Med4  Vitamin-D-receptor interacting Mediator subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.4   7.5e-05      0.27     134     174 ..       7      56 ..       6      78 .. 0.78
   2 ?    1.4   0.5     0.059   2.1e+02      18      54 ..      65     101 ..      50     105 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.5e-05
        Med4 134 deiRmGlLaalqlaaaegeerpgedpeeeeerkseeaegr.........r 174
                 ++iR+  La+lq+  a+g ++ g d+ee ++++++e+ ++          
  KKY21000.1   7 EQIRAARLAQLQQGRAQGGGPTGGDDEEAQRERISEQRQSillqilhpeA 56 
                 68********************************9988766666655550 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.059
        Med4  18 lkeleehqknearilqLraeveslDekikeivksLke 54 
                 l ++++  + e+r+ qL +  + +++++ + +k+L +
  KKY21000.1  65 LVKASRATDVENRLIQLAQTGQLREKVTEDQLKELLS 101
                 566777788999999****999999999999999976 PP

>> EF-1_beta_acid  Eukaryotic elongation factor 1 beta central acidic region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00039       1.4      10      24 ..       3      17 ..       2      19 .. 0.87
   2 ?    7.0   2.3    0.0023       8.3       5      21 ..      31      45 ..      29      46 .. 0.87
   3 ?   -1.3   0.1      0.87   3.1e+03      14      23 ..      89      98 ..      88     100 .. 0.85
   4 ?    2.5   1.3     0.057   2.1e+02       5      13 ..     135     143 ..     133     144 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00039
  EF-1_beta_acid 10 DeEaerlreeRLaaY 24
                    D ++e++r+ RLa+ 
      KKY21000.1  3 DSDVEQIRAARLAQL 17
                    7789*********97 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0023
  EF-1_beta_acid  5 DDEEEDeEaerlreeRL 21
                    DDEE  ++ er+ e+R+
      KKY21000.1 31 DDEE--AQRERISEQRQ 45
                    9999..9********96 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.87
  EF-1_beta_acid 14 erlreeRLaa 23
                    e++ e +L++
      KKY21000.1 89 EKVTEDQLKE 98
                    7999999998 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.057
  EF-1_beta_acid   5 DDEEEDeEa 13 
                     DD++ED Ea
      KKY21000.1 135 DDDDEDLEA 143
                     666668776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 927.05
//
Query:       KKY21001.1  [L=539]
Description: putative pre-mrna splicing factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-56  190.5   7.5    2.1e-55  187.9   7.5    2.0  1  PRP21_like_P  Pre-mRNA splicing factor PRP21 like protein
    1.4e-37  127.4   3.4    9.9e-21   73.5   0.2    2.4  2  Surp          Surp module
     0.0096   15.5   0.6      0.027   14.1   0.6    1.8  1  zf_UBZ        Ubiquitin-Binding Zinc Finger


Domain annotation for each model (and alignments):
>> PRP21_like_P  Pre-mRNA splicing factor PRP21 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.9   7.5   3.6e-59   2.1e-55       3     217 .]     205     464 ..     203     464 .. 0.83

  Alignments for each domain:
  == domain 1  score: 187.9 bits;  conditional E-value: 3.6e-59
  PRP21_like_P   3 kdkqkileralkraewekqkekeeqkkeeeeeeeklafasiDWqdFvvvetieFdd.deleelpkPltleelkarsleqkskal............. 85 
                   +dk ++l+ra+kr ew+k +e ++qkk+eeee e++a+a+iDW+dFvvvet+ F+d d++++lp+P++l+el+++sleqk +++             
    KKY21001.1 205 QDKFYVLDRAKKRSEWAKFQEAQKQKKDEEEEAERIAYAQIDWHDFVVVETVLFTDaDDQADLPPPTSLNELQSASLEQKAMMSlarpdmrieeafp 301
                   799********************************************************************************99**9999999999 PP

  PRP21_like_P  86 ......................................eeaeaetdvemevdeeeeeeseekiekkskesavseepalakae............... 129
                                                           ++a+t  ++ v+ +  ++ ++                                    
    KKY21001.1 302 tsedvsyydpytqqaqtvpyvpqptytpqpaqsmdyspAPSSANTLPPSSVSPQPPQTVSN--------------------Taplpshpspapplnq 378
                   9999999997776666666666555444444444444333333444444444444433333....................1444444555566666 PP

  PRP21_like_P 130 .....kkmkikadyesrlkkrknskatkekkkakcpitgeliPedeleeHmrieLlDPrykeqkdklvekkskesslltddevaenlkrlakk 217
                          m+i++dy++r++ r +  +t+      cp++ + iP +ele+HmrieLlDPr+keq+ k+  +++ ++++l +++va+nlkrla++
    KKY21001.1 379 qpaanAPMRIRNDYVPRAAARAAGPKTA-----LCPNCHQQIPLNELEQHMRIELLDPRWKEQRAKA--DSRYATTNLSTADVANNLKRLASQ 464
                   6666699***************999999.....********************************86..*********************985 PP

>> Surp  Surp module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.2   1.7e-24   9.9e-21       1      52 [.      31      81 ..      31      82 .. 0.95
   2 !   54.7   0.3   1.2e-18   7.5e-15       1      53 []     128     179 ..     128     179 .. 0.98

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 1.7e-24
                HHHHHHHHHHHTT-S.SHHHHHHHH.T--TTSGGGSTT.STTHHHHHHHHHH CS
        Surp  1 leiIkktAqfVarnGkeFeqklrerernnpqFaFLkdpdhpyhayYrwrvde 52
                + i++ktA fVarnG+ Fe+++re+e++np+F+FL+++ ++y a+Y+wr++e
  KKY21001.1 31 RAIVEKTAGFVARNGPVFEDRVREKEKHNPKFSFLNPN-DAYAAFYQWRLHE 81
                679********************************777.***********98 PP

  == domain 2  score: 54.7 bits;  conditional E-value: 1.2e-18
                 HHHHHHHHHHHTT-S.SHHHHHHHH.T--TTSGGGSTT.STTHHHHHHHHHHH CS
        Surp   1 leiIkktAqfVarnGkeFeqklrerernnpqFaFLkdpdhpyhayYrwrvdey 53 
                 lei+k+tA  Var Gk   ++l +re +n qF+FL+++ h+++++++++vd+y
  KKY21001.1 128 LEIVKLTALHVARKGKSWMTALAQREARNYQFEFLRPQ-HSLNQFFTKLVDQY 179
                 69*********************************999.*************9 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.6   4.5e-06     0.027       3      20 ..     406     423 ..     404     424 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.5e-06
      zf_UBZ   3 ylCerCgkeipeselqEH 20 
                  lC+ C+++ip +el++H
  KKY21001.1 406 ALCPNCHQQIPLNELEQH 423
                 68**************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1414  (0.0788666); expected 358.6 (0.02)
Passed bias filter:                      639  (0.0356406); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.54
# Mc/sec: 2992.38
//
Query:       KKY21002.1  [L=1157]
Description: putative protein mannosyltransferase 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-82  277.0  15.7    2.4e-82  276.2  15.7    1.4  1  PMT       Dolichyl-phosphate-mannose-protein mannosyltransfer
    4.3e-68  228.8  13.4    4.3e-68  228.8  13.4    2.3  2  PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltra
    2.9e-42  144.6   0.0    6.2e-42  143.5   0.0    1.5  1  MIR       MIR domain
    3.5e-16   59.2   1.3    7.2e-16   58.2   1.3    1.6  1  EB1       EB1-like C-terminal motif
    1.3e-05   25.3   0.1    2.7e-05   24.3   0.1    1.4  1  CH        Calponin homology (CH) domain


Domain annotation for each model (and alignments):
>> PMT  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.2  15.7   6.7e-86   2.4e-82       2     243 ..      64     312 ..      63     314 .. 0.96

  Alignments for each domain:
  == domain 1  score: 276.2 bits;  conditional E-value: 6.7e-86
         PMT   2 iltllallirlwrlslpnsvvfdevhfgkfasdYlehsffmdvhpplgkmllalggyLagkdgnftfesigaeyypenvpyvslRlfsallgslivplv 100
                 ++t++a+++r+ r+++p svvfdevhfg fas+Y++++ffmdvhppl+kml+al+g+Lag+dg+f+f++ig++y   +vpyv++Rl++a+lg+l+ p +
  KKY21002.1  64 AVTIIAAAVRIFRIYQPTSVVFDEVHFGGFASKYIKGKFFMDVHPPLAKMLIALVGWLAGFDGDFDFKEIGKDYIEPKVPYVAMRLLPAILGVLTIPTM 162
                 689***********************************************************************9999********************* PP

         PMT 101 yltllelgfskltallaallvllenslitlsryilldspLlf...ftllsmyclvkfe...rkapfsrswwlwllltgvalglavsvKwvglftvllvg 193
                 +ltl+  g +  ta+l a l+++en+l+t+sr+illdspL+f   ft+l+++c++  +    ++ f   ww+wl++tg++lg +vs+Kwvglft+++vg
  KKY21002.1 163 FLTLKAYGCRTMTAVLGAGLLIFENALVTQSRLILLDSPLIFctaFTALAFTCFTNQHeqgPSRAFDPTWWFWLVMTGLGLGATVSIKWVGLFTIAWVG 261
                 *****************************************977788999999999997774566889******************************* PP

         PMT 194 llliwelwqllgdkslllksi.vkhllaralaliviPvtlylavftvhfwl 243
                 +l++ +lw llgd    + +  +kh++ar+++li+iPv++y+ +f++hf  
  KKY21002.1 262 SLTVLQLWVLLGDTNTVTPRLwFKHFFARMFCLIIIPVAFYVGMFAIHFVC 312
                 ************99999998889**************************76 PP

>> PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   6.0         4   1.4e+04       1     111 [.     204     311 ..     204     315 .. 0.68
   2 !  228.8  13.4   1.2e-71   4.3e-68       1     199 []     560     758 ..     560     758 .. 0.95

  Alignments for each domain:
  == domain 1  score: -4.6 bits;  conditional E-value: 4
    PMT_4TMC   1 FlkkflelqkamltsnnalteshpyaSepyeWplllrgisywtkneekkqiyllGNpvlwwlstiallvfvllll.alllrrqrgvkdleeeetr..ll 96 
                 F + f  l    +t + +  +s  ++ +++ W++++ g+ +         i  +G   + w++++++l +++ll+  + ++ +  +k++   ++   ++
  KKY21002.1 204 FCTAFTALAFTCFTNQHEQGPSRAFDPTWWFWLVMT-GLGLGAT----VSIKWVGLFTIAWVGSLTVLQLWVLLGdTNTVTPRLWFKHF-FARMFclII 296
                 556677777788887777777899999999998764.5655543....46888888888899998888888888745555555555555.333334567 PP

    PMT_4TMC  97 nsglflllgwalhyl 111
                 + + f++  +a+h++
  KKY21002.1 297 IPVAFYVGMFAIHFV 311
                 777788888888886 PP

  == domain 2  score: 228.8 bits;  conditional E-value: 1.2e-71
    PMT_4TMC   1 FlkkflelqkamltsnnalteshpyaSepyeWplllrgisywtkneekkqiyllGNpvlwwlstiallvfvllllalllrrqrgvkdl.eeeetrllns 98 
                 Fl kf+elq++m+t+n++l+esh+++S+p +Wp+l+rgi++w+k+++  qiyllGNp++ww+st+a++++v++ ++ +lr+qrg++d+ +++ +r+ ++
  KKY21002.1 560 FLGKFWELQQVMWTTNAGLVESHTWDSRPPSWPVLRRGINFWGKDHH--QIYLLGNPAIWWASTAAIAIYVFFKGLSVLRWQRGYRDYdNTNFKRFDYE 656
                 999*****************************************987..***************************************4444555**** PP

    PMT_4TMC  99 glflllgwalhylPfflmgRvlflhhYlpAllfailllaalldfllkslkkslkkk.klvklivvvvllvlviavFiffspltyGlpgtseevkklkwl 196
                 +++ ++gwa+hy+Pfflm+R+lflhhYlpAl+fai++++++ df  +++ +   ++   ++++++v++l+++iavF +++pl+yG+++t++e+k++k++
  KKY21002.1 657 IGMTVIGWAFHYFPFFLMARQLFLHHYLPALYFAIMAMCQIYDFGANRIATLGIRNhPEIGRTIAVLYLAFCIAVFTMYAPLIYGNKWTQNECKSVKLF 755
                 *********************************************98777766555799**************************************** PP

    PMT_4TMC 197 ssW 199
                 ++W
  KKY21002.1 756 ETW 758
                 *** PP

>> MIR  MIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.5   0.0   1.7e-45   6.2e-42       2     184 ..     360     536 ..     359     543 .. 0.95

  Alignments for each domain:
  == domain 1  score: 143.5 bits;  conditional E-value: 1.7e-45
         MIR   2 yLkggdvvRLfHshqdeyltiseqqqkqevflritlypsadaanssraLWeievvqkd...............awrgglikwgkvyRlkHlaTgryLas 85 
                 yL         Hsh  +y+ +s+qqq       itlyp++d++n     W +e+++++               +  ++ i++g++++l+H  T+r+L+s
  KKY21002.1 360 YL---------HSHPSMYPGGSNQQQ-------ITLYPHKDDNNL----WLLENQTQPvdalnvtipgpqawsNLPTEWIRDGDILKLYHTPTHRRLHS 438
                 55.........***************.......***********9....*******************99555559*********************** PP

         MIR  86 eeekksplseseddqkevsayglegfegd.nDk..veifekksttgmksaklvprdsyvrlqHvvtgcwLhstsvklkkekfekvqqkvicakekedke 181
                 ++  ++p++e+ d+q+evsayg+egfegd nD   vei ++ s+   ++++l++++++++l Hv++gc+L+s++vkl++++ e  qq+v+ca+ ++ ++
  KKY21002.1 439 HDV-RPPVTEA-DWQNEVSAYGYEGFEGDaNDLfrVEIIRSMSDGAVAKQRLRTIETKFKLVHVMSGCVLFSHKVKLPDWGYE--QQEVTCARGGTLPN 533
                 ***.9999988.*****************8888**************************************************..**********9999 PP

         MIR 182 ala 184
                 +++
  KKY21002.1 534 SVW 536
                 876 PP

>> EB1  EB1-like C-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   1.3     2e-19   7.2e-16       1      41 []    1089    1134 ..    1089    1134 .. 0.89

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 2e-19
                  HHHHHHHHHHHHHHHHHHHHH......TT----HHHHHHHHHHHHS- CS
         EB1    1 LekERdFYFsKLRdIEilcqt......epeleedlpivkkikkILYa 41  
                  Le+ERdFYFsKLRdIE+l+q+      e e++ d++i+k+i++ILY+
  KKY21002.1 1089 LERERDFYFSKLRDIELLIQQaieadpEIEKD-DNSILKHIQSILYS 1134
                  8************************8444444.89999********7 PP

>> CH  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   7.6e-09   2.7e-05       5     100 ..     910     999 ..     907    1006 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 7.6e-09
                 HHHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTT...HHHHHHHHHHHHHHHHHHTTCHTTSS-HHHHHTTSHHHHHHHH CS
          CH   5 kellrWinshleeagpkvkvedfeedlrDGvlLckLlnklapglvdkkklnks...efkkleNinlaldvaekklgvpkvlieaedlvegknksvltll 100
                 +ell+W+ns l+ ++ kv      e++ +G ++c+++++++ +  ++++++++   e+ +++N++ +l+ +  + g++++   +e lv+ k + +l +l
  KKY21002.1 910 QELLAWLNSLLQLNITKV------EQCGTGAAYCQVFDSIYMDV-PMSRVKFNvntEYAYIQNFK-VLQNVFTRHGIDRMV-PVESLVKCKMQDNLDFL 999
                 699**********98888......8***************8866.78888777888*********.6666777******99.*******7777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.53
# Mc/sec: 6563.05
//
Query:       KKY21003.1  [L=636]
Description: putative gdp gtp exchange factor sec2p [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-26   92.4  18.9    1.2e-26   92.4  18.9    2.7  3  Sec2p         GDP/GTP exchange factor Sec2p
  ------ inclusion threshold ------
          2    5.8  26.4      0.094   10.2  20.0    1.7  2  DUF3584       Protein of unknown function (DUF3584)
        4.2    7.4  10.5        4.6    7.3   0.0    2.6  2  DUF1664       Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> Sec2p  GDP/GTP exchange factor Sec2p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.3     0.035   2.1e+02      39      68 ..      76     105 ..      46     108 .. 0.75
   2 !   92.4  18.9   2.1e-30   1.2e-26       2      91 ..     125     214 ..     124     215 .. 0.97
   3 ?   -2.7   0.3         1     6e+03      51      60 ..     582     591 ..     568     605 .. 0.51

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.035
                 HHHHHHHHHHHHHHHHHHHHHTTHCHCCCH CS
       Sec2p  39 aaarkekealekkneklkeqLkeketlles 68 
                 a+ r+e ea++ + ++l+++ ke e+ l+s
  KKY21003.1  76 AQTRHELEAARARVRQLEAEAKEYEEKLAS 105
                 566788888889999999999998888875 PP

  == domain 2  score: 92.4 bits;  conditional E-value: 2.1e-30
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHCHCCCHCTSSSSHHHHCTTTXXXXXXXXX CS
       Sec2p   2 lkeekkkreeaekekkklekEledLtasLFeeANkmVaaarkekealekkneklkeqLkeketlleslqeqLkeLkevlekmeeeseeqe 91 
                 l+ e+++++  ++ek+ +e Ele+Lt sLFeeANkmVaaa++ek+a+++kn++l+ q++++e+ll+s+qeqL eLk+v+++m+++++eqe
  KKY21003.1 125 LEAERRQKSMLQQEKRGIEMELETLTVSLFEEANKMVAAANQEKDAIQRKNQQLRDQVRDTEMLLASQQEQLMELKNVMQQMSSDRDEQE 214
                 6889*********************************************************************************99987 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1
                 HHHHHHHHHT CS
       Sec2p  51 kneklkeqLk 60 
                  n++l++ L+
  KKY21003.1 582 ANSQLQSALQ 591
                 3333333333 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  20.0   1.6e-05     0.094     295     467 ..      53     232 ..      37     243 .. 0.70
   2 ?   -1.2   0.4     0.043   2.6e+02     458     499 ..     564     605 ..     556     618 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 1.6e-05
     DUF3584 295 qlrtledelkeai...delnqelsaakaklaakeselealeeqkkkyedadieklkadldqlpsir....seleeleeeldaltekhqdvqekydrrkq 386
                 ++++l d+l +ai    +l   l +++++l+a+++++ +le+++k+ye++ ++ +    d+++  +    ++le+  ++   l ++ + ++ +++++  
  KKY21003.1  53 EVAALSDKLITAInhqTTLDDTLAQTRHELEAARARVRQLEAEAKEYEEKLASGALLTRDAADDAQdklvANLEAERRQKSMLQQEKRGIEMELETLTV 151
                 55555555555441114677899999***********************9988776666666655511115667777888899999999********** PP

     DUF3584 387 kikeeleeeleklkerleaireekdrlkaaieealealesqlrkqleaqkeelneeekel.esrlselklrldsatateEel 467
                  + ee ++ ++  +++++ai+ ++++l+ + ++    l sq++ ql + k+ +++   +  e++ +++ +   s+ + +Ee+
  KKY21003.1 152 SLFEEANKMVAAANQEKDAIQRKNQQLRDQVRDTEMLLASQQE-QLMELKNVMQQMSSDRdEQESVRASTAPSSPAVHKEET 232
                 **99999999999999999999998888888888877777777.44444444444333331334445555555555555554 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.043
     DUF3584 458 dsatateEeleqieeadealekaqeelekaeaevealqaeee 499
                 ds+++ +E ++ i+  dea ++ q++l+++ +++++ +++e+
  KKY21003.1 564 DSTSVANESQTSINGTDEANSQLQSALQQSIDDQHEINEKEN 605
                 556666666666777777777777777766666666665554 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0   0.00078       4.6      63     118 ..      49     104 ..      38     106 .. 0.92
   2 ?   -0.2   7.9      0.16   9.8e+02      35     120 ..     110     199 ..     107     216 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00078
     DUF1664  63 hLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskle 118
                 +Ls++++ + +kl   ++ ++ +++ +++ r++l++ +  v+++++  ++ e+kl+
  KKY21003.1  49 DLSAEVAALSDKLITAINHQTTLDDTLAQTRHELEAARARVRQLEAEAKEYEEKLA 104
                 6999999*************************************999999999986 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.16
     DUF1664  35 Tkrslsdavesvskqleqvs...eslaatkrhLssridrvdkkl.deqkeiskeikeevtevredlseigedvesvkeavegleskleri 120
                 T+    da +++  +le      + l++ kr ++ +++++  +l +e +++ ++ ++e ++++++ ++++++v+  + +  + +++l ++
  KKY21003.1 110 TRDAADDAQDKLVANLEAERrqkSMLQQEKRGIEMELETLTVSLfEEANKMVAAANQEKDAIQRKNQQLRDQVRDTEMLLASQQEQLMEL 199
                 555566666666666665432225677778888888888877654667777777777777778877777777777766666655555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2157  (0.120308); expected 358.6 (0.02)
Passed bias filter:                      658  (0.0367003); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.35s 00:00:01.22 Elapsed: 00:00:00.54
# Mc/sec: 3521.98
//
Query:       KKY21004.1  [L=554]
Description: putative lyr family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 4003.65
//
Query:       KKY21005.1  [L=570]
Description: putative tbc domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-22   79.6   0.1    4.7e-22   78.7   0.1    1.5  1  RabGAP-TBC  Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.1   2.6e-26   4.7e-22      31     169 ..      97     268 ..      39     271 .. 0.73

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 2.6e-26
  RabGAP-TBC  31 sekeksklekseeskelsqIkkDvprtfpesesfknkqgqnqLeriLkaysiynpevgYcqGmndivapll............................ 101
                 + +++   + ++++ +   I +Dv+r ++e+++f+++ +q+ L  iL++ys+ +p++gY qGm+ ++ap+                             
  KKY21005.1  97 DDHNSPWATLRQDEVNRAEIFQDVERCLQENFFFREPRTQKILLDILFIYSKLHPDIGYRQGMHELLAPIVwvierdavdldmdtersgkkeeehlmtl 195
                 3444444445555666999**********99****************************************9888888876666666655555555544 PP

  RabGAP-TBC 102 .lvsldeee.......aFwcfvsLlekyklrdlytsslpg.....lkrklkvleellkkkdpklykhlkeegldlelfaik 169
                  l      +       aF +f++ +  ++++++y+ +  +     ++r +k+ + ll k+dp+l++hl+++++ +++f+i+
  KKY21005.1 196 aL------DsqyiehdAFSLFCAVM--QTMKSFYELGETNasspiVNRSVKIHDGLLTKIDPELAEHLQSIEILPQIFLIE 268
                 43......05555666*********..999999987775555677*********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3919.73
//
Query:       KKY21006.1  [L=1024]
Description: putative serine threonine protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-56  190.4   0.0    5.4e-56  189.9   0.0    1.3  1  Pkinase         Protein kinase domain
    7.9e-20   71.2   0.0    1.2e-19   70.6   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    0.00098   18.2   0.0      0.002   17.1   0.0    1.4  1  Haspin_kinase   Haspin like kinase domain
     0.0017   17.7   0.0     0.0035   16.7   0.0    1.4  1  Kinase-like     Kinase-like
     0.0053   16.7   0.1      0.018   15.0   0.0    1.8  2  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.012   14.5   0.0      0.023   13.5   0.0    1.4  1  Pkinase_fungal  Fungal protein kinase
      0.014   15.0   0.4      0.028   14.0   0.0    1.6  2  RIO1            RIO1 family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.9   0.0   2.1e-59   5.4e-56       2     264 .]     737    1020 ..     736    1020 .. 0.84

  Alignments for each domain:
  == domain 1  score: 189.9 bits;  conditional E-value: 2.1e-59
                  EEEEEEEEESSEEEEEEEETTT.TEEEEEEEEECHCHCHHHH......HHHHHHHHHHHHHS.....CTTB--EEEEEEESSEEE..EEEE--TTEB CS
     Pkinase    2 ekleklGeGsfGkVykaveket.gkivAvKkikkekakkkke......kkvlrEikilkklk.....hpnivrlyevfeekdely..lvleyvegge 84  
                  + le++G+G++G+V  ++ k++ ++++++K + k+++  ++        +v  Ei+++  l+     h+niv+++++fe++ ++y  ++   ++g +
  KKY21006.1  737 TILEEMGQGAYGQVKLGRYKKNgSRKMVIKYVTKRRILVDTWtrdrrlGTVPLEIHVMDYLRrdgmrHENIVEMVDFFEDDINYYieMLPHGIPGVD 833 
                  6789**********999866551689*********99877777778889999******998777888*************99988445667788899 PP

                  HHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTT.EE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHH CS
     Pkinase   85 ladllerkgslseeeakkiakqilegleylHskg.iiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvD 179 
                  l+d++e +++++e e+++i+kq+  ++++lH k  ++HrD+K+eNi +d +g++K++DFG a+ ++++  ++ fvgt +Y APEvl++++y +k+ D
  KKY21006.1  834 LFDYIELRTNMEEGECRNIFKQVSDAIHHLHTKAlVVHRDIKDENIVLDGEGKIKLIDFGSAAYIKNGP-FDVFVGTIDYAAPEVLQGRPYrGKEQD 929 
                  ******99***********************6665********************************99.*************************** PP

                  HHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT......SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase  180 vWslGvilyelltgkppfsgekgkekvekeldqlekilkilg......etkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264 
                  vW+lG++ly+++++++pf++ ++  ++   +  l  +++ +        +++  +  ++ se + dl++++l++d  +R++++e+++hp+l
  KKY21006.1  930 VWALGILLYTIVYKENPFYNIEEILDHPLRIPFLPFSRDAFAdgvgisGEEMGDEGYNDGSEGCVDLIRRMLDRDVDERISIAEVKSHPWL 1020
                  *******************44443333333332333333332445554334444555555******************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   4.7e-23   1.2e-19       2     209 ..     737     950 ..     736     955 .. 0.79

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 4.7e-23
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST.......TSSHHHHHHHHHHHHHHHT.....S-BTTB--EEEEEESSSSEEEEEE--TTE. CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlke.......eateeekeelleeakimkk.....lkhpnivkllgvctkeepllivteyvkgG. 86 
                  ++ +++G+Ga+G+V  g++k   ++ + k ++K +++        +++++   +  e+++m       ++h+niv+++ +  ++ +++i  e++++G 
   KKY21006.1 737 TILEEMGQGAYGQVKLGRYK---KNGSRKMVIKYVTKrrilvdtWTRDRRLGTVPLEIHVMDYlrrdgMRHENIVEMVDFFEDDINYYI--EMLPHGi 829
                  56799***************...66666777777654223322123444455666799999751122247************7776554..5666665 PP

                  ...BHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT.EEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHS CS
  Pkinase_Tyr  87 ...dLlkfLrkkekekltlkdllsfalqvAkGmeyLeskk.lvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkek 180
                     dL ++++ +  ++++  +  ++  qv++++++L++k  +vHrd+   N++l+ + ++k+ DfG a  i++       +     + + apE+l+ +
   KKY21006.1 830 pgvDLFDYIELR--TNMEEGECRNIFKQVSDAIHHLHTKAlVVHRDIKDENIVLDGEGKIKLIDFGSAAYIKNG----PFDVFVGTIDYAAPEVLQGR 921
                  556******998..99*********************999679****************************333....344566789*********** PP

                  EEE.HHHHHHHHHHHHHHHHTTSSGTTTTS CS
  Pkinase_Tyr 181 kft.sksDvWsfGvllwEiftlgespypgl 209
                   +  ++ DvW+ G+ll+ i+   e+p+ ++
   KKY21006.1 922 PYRgKEQDVWALGILLYTIVY-KENPFYNI 950
                  *973568***********998.67777665 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   7.8e-07     0.002     202     254 ..     843     895 ..     787     916 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 7.8e-07
  Haspin_kinase 202 lkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlkls 254
                      +  ++ +if q+   ++   tk    HRd++ +ni +d ++++ lid+  +
     KKY21006.1 843 NMEEGECRNIFKQVSDAIHHLHTKALVVHRDIKDENIVLDGEGKIKLIDFGSA 895
                    3344589******************************************9765 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.4e-06    0.0035     142     255 ..     846     952 ..     832     958 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.4e-06
  Kinase-like 142 etiarlllTlqlirlaanLqakgl.vhgkftvdnllldekgglmlggftaLvragtkvvl.seve.kgfaPpEllgsrggytrknktkmthkldaWql 236
                  e  +r +   q+   + +L+ k l vh +++ +n++ld +g+++l +f++    + +++    v    +a pE+l  r  y+         + d+W+l
   KKY21006.1 846 EGECRNIF-KQVSDAIHHLHTKALvVHRDIKDENIVLDGEGKIKLIDFGSAAYIK-NGPFdVFVGtIDYAAPEVLQGRP-YRG-------KEQDVWAL 933
                  55566666.56777788999988637**********************9865443.344312232367999**998844.555.......467***** PP

  Kinase-like 237 GlviyriwclklPltlate 255
                  G+  y i   + P+ +++e
   KKY21006.1 934 GILLYTIVYKENPFYNIEE 952
                  *******999999987766 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.33   8.4e+02      33     106 ..     783     864 ..     767     865 .. 0.71
   2 !   15.0   0.0     7e-06     0.018     159     198 ..     862     897 ..     830     899 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.33
                 -HHHHHHHHHHHHHHHHTT-...B--B-CTTBS-EEETTEEEEEEE----EE-SS......HHHHHHHHHHHHHHHHHHCCHH CS
         APH  33 aaeeirrevallrlLakagv...pvPevlagdtddeeigllfalieyvpgrsllr......klsaaqlpellealgeflaalh 106
                    +++ e +++++L++ g     + e++++ +d + +++   l  ++pg +l +      ++ + + ++++ ++ +++ +lh
  KKY21006.1 783 RLGTVPLEIHVMDYLRRDGMrheNIVEMVDFFED-DINYYIEMLPHGIPGVDLFDyielrtNMEEGECRNIFKQVSDAIHHLH 864
                 455788899*********99999999***98655.555554555555555555555555555558888888888888888887 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 7e-06
                 H--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 159 llpgelptvllHgDlhpgNllvdpddgrvtGviDfedagl 198
                 +l+   ++ ++H+D++  N+++d ++g++  +iDf+ a +
  KKY21006.1 862 HLH--TKALVVHRDIKDENIVLD-GEGKI-KLIDFGSAAY 897
                 344..6899**************.77887.8*****9876 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   8.9e-06     0.023     304     388 ..     848     920 ..     841     942 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.9e-06
  Pkinase_fungal 304 spkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkg 388
                     + +++++ + DaI     L++ka ++HrDi  +Ni++      ge k  LiD+  a  +++          +GT+ + a evl+g
      KKY21006.1 848 ECRNIFKQVSDAIH---HLHTKALVVHRDIKDENIVLD-----GEGKIKLIDFGSAAYIKN--GPF--DVFVGTIDYAAPEVLQG 920
                     56677888888885...7999****************9.....99999********99995..333..45789999999999986 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       2.9   7.3e+03      84     103 ..     793     812 ..     790     825 .. 0.65
   2 ?   14.0   0.0   1.1e-05     0.028      98     153 ..     840     896 ..     831     902 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.9
                 EEE--EETTEEGGBHHHCG- CS
        RIO1  84 vmefigedgvaapklkdvee 103
                 vm+++ +dg++  ++ ++ +
  KKY21006.1 793 VMDYLRRDGMRHENIVEMVD 812
                 88888888888888877763 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.1e-05
                 HHHCG-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GTTEE CS
        RIO1  98 lkdveeeeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvsQav 153
                 l+   ee e ++++++v ++++ l ++a +vH D+ + N+++d + k+ +ID++ a 
  KKY21006.1 840 LRTNMEEGECRNIFKQVSDAIHHLHTKALVVHRDIKDENIVLDGEgKIKLIDFGSAA 896
                 5555568999********************************9988******98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1024 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.77u 0.34s 00:00:01.11 Elapsed: 00:00:00.49
# Mc/sec: 6257.02
//
Query:       KKY21007.1  [L=356]
Description: putative catalase domain containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-26   90.8   0.0      2e-25   89.8   0.0    1.4  1  Catalase  Catalase


Domain annotation for each model (and alignments):
>> Catalase  Catalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0   1.1e-29     2e-25      45     338 ..      75     349 ..      72     355 .. 0.88

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 1.1e-29
                 -SS--SEEEEEEEEEESS--TTT---GGGSSTT-EEEEEEEEE-SS--TT--..SSSSS--EEEEEEEETTE....EEEEEEESSSS-S-S-GGGHHHH CS
    Catalase  45 RvvhAkGagahgeFevtkdisdltkakllskvgkktpvlvRfStvagekgsa..dtaRdvrGfavkfyTeeG....nwDlvgnntpvFfirDpikfpdl 137
                 R  hAkG    g+++ t+ +++l+ka  ++k    tpv++RfS  +g  + +  d+  ++rGfav+f   e       D+++  tp F  r p    ++
  KKY21007.1  75 RPAHAKGLLLKGTLTPTETAKKLSKAPHFKK--DSTPVIARFSNSTGLPQIPdnDANANPRGFAVRFMLAETprrvHTDIITHSTPFFPARTPEDTFKF 171
                 778**************************98..89********9998777651167889********97664333378********************* PP

                 HHHHSB-TTT-SB-HHHHHHHHHT-GGGHHHHHHHHSGGGSBS-GGGS-EE--S-EEEE-TT--EEEEEEEEEETT---B--HHHHHHHHHH-TTHHHH CS
    Catalase 138 ihsqkrepqtnlkdaamfwdflslnpeslhqvlilfsdrgipksyrhmngygvhtfklvnkegevvyvkfhfktkqgvknltaeeaeklagedpdyatr 236
                  ++ k   +          ++l ++pe++    ++ + +  p+s+ + n ++v++fkl+ ++g+ +++++++ ++ g ++l    a++++++ ++y  +
  KKY21007.1 172 FKTLKDGTTP---------QWLETHPEAV---AFIRAPKPAPSSFARENFFSVNAFKLIAEDGKETFIRYKILPEAGEDHLD---AAAVKEKLENYLFE 255
                 ****976543.........38999**985...677899****************************************9996...5677889999**** PP

                 HHHHHHHTT---EEEEEEEEEEHHHHTTTHHHHT-TT----TTTS--EEEEEEEEEE--S-HHHHTTT----TT---TTEE--S-HHHHHHHHHHHHHH CS
    Catalase 237 dLyeaiekgeypewelyvqvmteeeaeklrfnilDlTkvwpekevplrevGkltLnrnpenyFaevEqvafspsnlvpGiepseDklLqgRlfsYadtq 335
                 +L  ++++g    ++l+ qv ++ + ++      D+   wpe +  + ++G+++L+  ++n  +e  ++ f+p   v+G+e+s+D+l++ R   Y  + 
  KKY21007.1 256 ELPGSLKQGPI-AFKLKAQVAKDGDVTD------DVSVHWPE-DREVVDLGTIKLESLVDNNATEQQKIIFDPVPRVDGVEASDDPLINLRAGIYLISG 346
                 *******9975.7*******99887654......88899998.56899*******************************************99887776 PP

                 HHH CS
    Catalase 336 ryR 338
                 r R
  KKY21007.1 347 RER 349
                 666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2263.00
//
Query:       KKY21008.1  [L=538]
Description: putative glycogen debranching enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   11.1   0.2         15    4.4   0.0    2.5  3  GDE_C     Amylo-alpha-1,6-glucosidase


Domain annotation for each model (and alignments):
>> GDE_C  Amylo-alpha-1,6-glucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0   0.00082        15      18      41 ..      61      85 ..      42      95 .. 0.77
   2 ?   -2.7   0.0      0.12   2.2e+03     173     209 ..     252     290 ..     245     317 .. 0.70
   3 ?    4.0   0.0    0.0011        19     298     320 ..     416     438 ..     363     502 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.00082
       GDE_C 18 eekgvsliAGlpwFsd.WGRDtfIa 41
                 ++ ++l+AG   F    GRDt+I+
  KKY21008.1 61 LSYSNKLVAGAWRFLTyFGRDTMIS 85
                5667899***9999988*******8 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.12
       GDE_C 173 aLwyaaLkileelaekalge..akkssykelaekikesf 209
                 aL+ aaL+++++la+++ +    ++s++++la+k  + +
  KKY21008.1 252 ALMPAALRSIASLARSEDIRifPEASNWSTLADKYAKVW 290
                 899999999999998765554446667777776655544 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.0011
       GDE_C 298 srdaaYHqGtvWvwllgsyveal 320
                  ++ aYH   +W w l++  + l
  KKY21008.1 416 FTNSAYHGTVIWSWQLAMMARGL 438
                 57889***9*******9987754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 3378.16
//
Query:       KKY21009.1  [L=647]
Description: hypothetical protein UCRPC4_g03926 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.1e-139  464.3  29.1    1.9e-79  267.7  10.6    3.2  3  Acatn     Acetyl-coenzyme A transporter 1
    9.2e-12   44.5   0.2    2.2e-11   43.3   0.2    1.7  1  Yae1_N    Essential protein Yae1, N terminal


Domain annotation for each model (and alignments):
>> Acatn  Acetyl-coenzyme A transporter 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.7  10.6   2.1e-83   1.9e-79       2     226 ..      55     265 ..      54     268 .. 0.94
   2 !   92.4   0.1   2.7e-30   2.4e-26     258     342 ..     262     346 ..     259     349 .. 0.96
   3 !  117.3   5.6   7.3e-38   6.6e-34     371     480 ..     347     458 ..     345     478 .. 0.91

  Alignments for each domain:
  == domain 1  score: 267.7 bits;  conditional E-value: 2.1e-83
       Acatn   2 fylLvvLyllqGiPvGLafgtiPflLkslaketsftelgvfslatyPyslkilWsPivDslyskkiGrrrsWiiPvqlvsgilllvlglaiskglifeg 100
                 f lLv+Ly+lqGiP+GLa+g++PflLks   ++s+ ++g+fsla+yPys+k+lWsPivD++++   Grr+sWi+Pvq++sg+ ++ lg  i + ++  g
  KKY21009.1  55 FLLLVMLYFLQGIPMGLAMGSLPFLLKS---HLSYGQIGIFSLASYPYSIKLLWSPIVDAIWNPTFGRRKSWIVPVQFLSGLSMIYLGGQIDEMMVAAG 150
                 89**************************...9********************************************************77666555443 PP

       Acatn 101 vddafhgeasekvlkvnilsLtlvflvLvllcatqDiavDgWaltiLskkslsyastaqtvGlnlGyflsftvflslnssdfvnkylrkvpleyglvsl 199
                  +               + ++t ++++Lv++catqDiavDgWa+ +Ls +++syastaqtvGl  G fls+t+fl+ln  +f+n +lrk+p++ gl++l
  KKY21009.1 151 AN-----------GGSGVWNFTGWWFFLVFMCATQDIAVDGWAISLLSISNISYASTAQTVGLTAGSFLSHTIFLALNAPEFANTWLRKTPKDSGLLTL 238
                 22...........23457889999999************************************************************************ PP

       Acatn 200 sgylklaGllyllvtlyvvfltkekpl 226
                 +gy+ ++G+ y+++t+ +++l++e+ +
  KKY21009.1 239 GGYMIFWGWAYIAITIGMALLKREEKT 265
                 **********************99975 PP

  == domain 2  score: 92.4 bits;  conditional E-value: 2.7e-30
       Acatn 258 eeksektssiksvyrllikvlkLksvrllalihlisklafqcneaatnlkLLekGlkreDlavtvlidvPfeiifgyyvakwssd 342
                 eek+++ + i+svyr+++ ++kLk++ ++++ihlisk++f  n+a tnlkLL+kG+ + +la++v+id+Pfei +gyy  kws++
  KKY21009.1 262 EEKTKEREGIMSVYRSMWGIMKLKNIITIIIIHLISKIGFVTNDAVTNLKLLDKGFGQANLALVVMIDFPFEISLGYYAGKWSNQ 346
                 57889999***************************************************************************87 PP

  == domain 3  score: 117.3 bits;  conditional E-value: 7.3e-38
       Acatn 371 agvltPWlygflgrllaailgsyvvksfPk..dgeitksyfllviiqhllgsflstvqfvgisafhtriaDpvlgGtymtllntlsnlGgtWprllvls 467
                  g lt W ++f+grl+aa++g++vv+ +P   d+++   y l vi+ h+++ f++tv fv++safh+riaDp++gGtymtll t+snlGgt+p+ ++l 
  KKY21009.1 347 YGSLTIWSWAFVGRLVAAVFGQLVVMIYPAgpDASVPFWYMLTVIFSHVFSTFMNTVMFVAVSAFHARIADPTIGGTYMTLLATVSNLGGTFPKYFILK 445
                 57799************************84467788888999******************************************************** PP

       Acatn 468 lidyftiyecvle 480
                 l+d ft+++ v++
  KKY21009.1 446 LVDLFTMAQSVIS 458
                 ******9987754 PP

>> Yae1_N  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.2   2.4e-15   2.2e-11       1      39 []     517     555 ..     517     555 .. 0.98

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 2.4e-15
      Yae1_N   1 GYreGiaeGkeqglqeGfdeGyqeGaqlGlelGqilGvl 39 
                 GYreG++ +k+++ q+Gfd Gy+ G++lGl +G+  G+l
  KKY21009.1 517 GYREGLSIAKAKTIQAGFDAGYPLGVELGLTVGRVFGIL 555
                 9**********************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 4344.95
//
Query:       KKY21010.1  [L=353]
Description: putative salicylate hydroxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-07   31.1   0.7    0.00017   20.9   0.1    2.3  2  FAD_binding_3  FAD binding domain
    4.3e-05   22.7   0.7    0.00049   19.3   0.7    2.0  1  Lycopene_cycl  Lycopene cyclase protein
    6.8e-05   22.2   0.9    0.00076   18.8   0.2    2.1  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00016   21.0   0.3    0.00034   19.9   0.3    1.5  1  Thi4           Thi4 family
    0.00062   20.0   1.5     0.0012   19.0   0.1    2.2  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0011   17.7   1.2     0.0031   16.3   0.5    2.0  2  HI0933_like    HI0933-like protein
     0.0039   17.2   0.4       0.43   10.5   0.3    2.3  2  NAD_binding_9  FAD-NAD(P)-binding
     0.0051   15.9   2.5      0.012   14.7   2.0    1.8  2  FAD_binding_2  FAD binding domain
  ------ inclusion threshold ------
      0.029   13.7   0.1       0.11   11.7   0.0    1.9  2  Amino_oxidase  Flavin containing amine oxidoreductase
      0.052   14.1   0.1       0.14   12.8   0.1    1.8  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      0.071   12.7   1.0       0.15   11.6   1.0    1.5  1  DAO            FAD dependent oxidoreductase
      0.074   12.3   0.3       0.11   11.7   0.3    1.3  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      0.095   11.8   0.3       0.13   11.4   0.3    1.2  1  GIDA           Glucose inhibited division protein A
       0.19   11.0   0.6       0.47    9.7   0.4    1.7  2  FAD_oxidored   FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   1.4e-07   0.00017       3     175 ..       9     173 ..       8     184 .. 0.78
   2 !    8.0   0.1    0.0011       1.5     284     318 ..     245     279 ..     234     301 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.4e-07
                    EEEEE--SHHHHHHHHHHHHT.THHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHH...CHH CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLsea.GvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdtpkaradle...les 94 
                     V+++G+Gp Gl +a  Ls+a  ++v l e+ ++  + + +  +     ++l+ lG +d+++ + +++   +  l+++       +a +    +  
     KKY21010.1   9 RVAVIGGGPGGLGAAIALSSApDIKVSLFEQAQELREIGAGIQIGYNCWRVLELLGAADSVKGHLNTQVFHRNGLNGQ-----LLKATYPpssI-P 98 
                    699***************9984599*************************************9997777666666666.....44444442111.1 PP

                    CST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGG CS
  FAD_binding_3  95 spervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgie 175
                    +  ++  +  t+l+ +Lv++ + +   ++ k++++s +qd  g   +++ +++    + +a+ +vG DG rS + ++ g +
     KKY21010.1  99 TRYHPRRVRRTRLQSALVSK-VPE-GVIQLKKRLVS-LQDIPGGGVKLLFEDQT---EAEADLVVGGDGIRSVSHSNEGNQ 173
                    22346678889999999998.444.45778888885.56777768888888644...459************998877766 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0011
                    TTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 284 grvflaGDAaHihpPtgGqGlNtaiqDavnLawkL 318
                    +++ l+GDA H  + + G G   a++D   L +++
     KKY21010.1 245 DKIVLVGDASHPLSGAFGSGAAFALEDGWVLTRAI 279
                    899************************88887765 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.7   3.8e-07   0.00049       2     170 ..      10     190 ..       9     193 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.8e-07
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsllf..pnn...y.vWsdefedlgaleecvehsWsgtivylddgkkillg.........raY. 81 
                    v+viG+Gp gl  A  l +++p++kv l e +++l    ++    y  W   +  lg  ++ v+   +  + + ++ + +ll           +Y 
     KKY21010.1  10 VAVIGGGPGGLGAAIAL-SSAPDIKVSLFEQAQELREigAGIqigYnCWRVLE-LLG-AADSVKGHLNTQVFHRNGLNGQLLKatyppssipTRYh 102
                    89**********99999.99**********99987431122211144565543.445.33444444444455555544444443455566666674 PP

  Lycopene_cycl  82 .grvsskrlkeellerlvengvklleakvesveeeeageslvvleggrkirarlvvdarglaslkkarrlglQtfyGvevevdnppfdld 170
                     +rv+++rl++ l  +++ +gv+ l+ +  s ++ + g +    e+  + +a lvv + g  ++  + + g Q+f     +v np  d++
     KKY21010.1 103 pRRVRRTRLQSALVSKVP-EGVIQLKKRLVSLQDIPGGGVKLLFEDQTEAEADLVVGGDG-IRSVSHSNEGNQMFEIAARRVVNPETDPE 190
                    479***************.99***************************************.899999999***99888888888877776 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.2   5.9e-07   0.00076       2      32 ..       9      40 ..       8      82 .. 0.87
   2 ?    2.0   0.0     0.078     1e+02     214     243 ..     138     168 ..     106     188 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5.9e-07
                 SEEEE--SHHHHHHHHHHHHH.TS-EEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqa.gakvtlvele 32
                 +v+viGgGp+Gl aa+ l+ a  +kv l+e+ 
   KKY21010.1  9 RVAVIGGGPGGLGAAIALSSApDIKVSLFEQA 40
                 79******************659*****9733 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.078
                  E.EEEEEETTSCEEEESEEEE-S-EEES-HH CS
                  x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 214 e.klevvledgeeidadlvvvavGvrpstel 243
                     +++  ed++e +adlvv + G+r  +  
   KKY21010.1 138 GgGVKLLFEDQTEAEADLVVGGDGIRSVSHS 168
                  34679999****************9987655 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.3   2.6e-07   0.00034      20      59 ..      10      52 ..       3      69 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.6e-07
                EEEE--SHHHHHHHHHHHHCTTS-EEEEESSS...S--TTTTT CS
        Thi4 20 vvivGaGssGLtaayylakkpdlkvailersv...spGGGawl 59
                v+++G+G+ GL aa  l+ +pd+kv ++e+      +G G+  
  KKY21010.1 10 VAVIGGGPGGLGAAIALSSAPDIKVSLFEQAQelrEIGAGIQI 52
                89***************************86411235666655 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   9.5e-07    0.0012       1      30 [.      12      42 ..      12      44 .. 0.94
   2 ?   -2.1   0.2       3.8   4.9e+03       4      16 ..     258     270 ..     258     277 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 9.5e-07
                   EE--SHHHHHHHHHHHCC.TEEEEEE-SSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gfdvlllekrdr 30
                   ++G+G +Gl aA +L+ a +++v l+e+++ 
     KKY21010.1 12 VIGGGPGGLGAAIALSSApDIKVSLFEQAQE 42
                   8****************99********9875 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.8
                    -SHHHHHHHHHHH CS
  NAD_binding_8   4 aGlsGlvaAylLa 16 
                    +G++G+ aA +L 
     KKY21010.1 258 SGAFGSGAAFALE 270
                    7999999999986 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.5   2.4e-06    0.0031       2      35 ..       9      43 ..       8      49 .. 0.90
   2 ?   -1.6   0.0      0.63   8.1e+02     153     184 ..     242     272 ..     237     279 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.4e-06
                 SEEEE--SHHHHHHHHHH.HHTT--EEEE-SSSSS CS
  HI0933_like  2 dviviGgGaAGlmaAisa.akrgkrVlllekakkl 35
                 +v+viGgG+ Gl aAi++ ++ + +V l+e+a++l
   KKY21010.1  9 RVAVIGGGPGGLGAAIALsSAPDIKVSLFEQAQEL 43
                 699**************9778899*******9875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.63
                  EEESEEEE----SS-GGGT--SHHHHHHHHTT CS
  HI0933_like 153 leadklvlAtGGlSiPklGstgkgyklaeqfg 184
                  ++ dk+vl  G +S P  G+ g+g  +a + g
   KKY21010.1 242 IAWDKIVLV-GDASHPLSGAFGSGAAFALEDG 272
                  556778887.**************99997766 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.3   0.00034      0.43       1      36 [.      11      42 ..      11      51 .. 0.87
   2 ?    4.5   0.0     0.024        31      88     150 ..      95     157 ..      69     161 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00034
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsep 36
                   a++G+Gp Gl ++ +L +      ++++ lf++++ 
     KKY21010.1 11 AVIGGGPGGLGAAIALSSA----PDIKVSLFEQAQE 42
                   89**************999....5999***999654 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.024
  NAD_binding_9  88 ddfvpRalyGrYlrdlfeel.larlpegvtvevhraevvdleeradgq.avlladgaslaadaVv 150
                    ++ ++R +  r  r +++++ ++++peg  v  ++++ v+l++ ++g  ++l +d+++ +ad Vv
     KKY21010.1  95 SSIPTRYHPRRVRRTRLQSAlVSKVPEG--VIQLKKRLVSLQDIPGGGvKLLFEDQTEAEADLVV 157
                    5555555555555555555415566876..56679999999999988539999**********98 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   2.0   9.7e-06     0.012       2      35 ..      10      44 ..       9      53 .. 0.94
   2 ?   -1.5   0.0      0.77   9.9e+02      81     107 ..     111     137 ..     105     212 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.7e-06
                   EEEE--SHHHHHHHHHHHHTTT.-EEEEESSSGGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGl.kvavvekeqefg 35
                   v ViG+G +GL AA++++ a   kv + e++qe +
     KKY21010.1 10 VAVIGGGPGGLGAAIALSSAPDiKVSLFEQAQELR 44
                   89*****************9999********9865 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.77
                    HHHHHHHTHHHHHHHHHHTT----BCC CS
  FAD_binding_2  81 lveafveaapeavdeLeelgvpfsrte 107
                    l+ a+v+++pe v +L++  v ++  +
     KKY21010.1 111 LQSALVSKVPEGVIQLKKRLVSLQDIP 137
                    566777777777777777766665522 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.75   9.6e+02       3      22 ..      19      39 ..      17      43 .. 0.90
   2 ?   11.7   0.0   8.8e-05      0.11     212     257 ..     111     157 ..      75     159 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.75
                   HHHHHHHHHHTT.EEEEEEES CS
  Amino_oxidase  3 GLaaArqLlsaG.fdVtvlEa 22
                   GL aA  L+sa   +V+++E 
     KKY21010.1 19 GLGAAIALSSAPdIKVSLFEQ 39
                   99*****************96 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 8.8e-05
                    HHHHHHHTTTTEEEETSEEEEEEEE.ETTCEEEEETTSTEEEESEEE CS
  Amino_oxidase 212 lpealaeelrgldirlntrVkeikr.egdgvtvtledgevveaDaVv 257
                    l  al ++ +++ i+l +r+ +++   g+gv++ +ed+++ eaD Vv
     KKY21010.1 111 LQSALVSKVPEGVIQLKKRLVSLQDiPGGGVKLLFEDQTEAEADLVV 157
                    67789999*****************99999****************8 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   0.00011      0.14       1      35 [.       9      44 ..       9      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
                EEEEECSSHHHHHHHHHHHHTT.SEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelg.kkVtvversdkll 35
                +v+v+GgG  gl +A al+     kV+++e + +l+
  KKY21010.1  9 RVAVIGGGPGGLGAAIALSSAPdIKVSLFEQAQELR 44
                79****************885527********9999 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.0   0.00012      0.15       1      31 [.       9      42 ..       9      50 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
                EEEEECTSHHHHHHHHHHHHTT...EEEEESSSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg...Vtllekgdi 31
                +v++iGGG  Gl++A +L+ ++   V l+e++ +
  KKY21010.1  9 RVAVIGGGPGGLGAAIALSSAPdikVSLFEQAQE 42
                59****************9998899*****9865 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   8.9e-05      0.11       2      21 ..      12      31 ..      11      45 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.9e-05
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagl 21
                 +iG+GP Gl+aai+l  a  
   KKY21010.1 12 VIGGGPGGLGAAIALSSAPD 31
                 8**************98865 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   9.9e-05      0.13       2      33 ..      10      44 ..       9      91 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.9e-05
                EEEE-SSHHHHHHHHHHHHT.T--EEEE..ES-GG CS
        GIDA  2 viViGgGhAGceAAlaaarl.GakvlLi..thkld 33
                v ViGgG  G+ AA+a++ +  +kv L+  +++l 
  KKY21010.1 10 VAVIGGGPGGLGAAIALSSApDIKVSLFeqAQELR 44
                89**************9876489999995544444 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.4   0.00037      0.47       2      29 ..      10      38 ..       9      43 .. 0.74
   2 ?   -1.8   0.0       1.2   1.5e+03     104     140 ..     143     183 ..     127     220 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00037
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAara.GakvlLve 29
                  v V+GGgp+G+ AAia   a + kv L e
    KKY21010.1 10 VAVIGGGPGGLGAAIALSSApDIKVSLFE 38
                  89*************96544244555555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.2
  FAD_oxidored 104 vllntrl...vevekegkriesvtveske.grktirAkvfi 140
                   +l++ +     + ++ g+ i+sv   ++  ++ +i+A++++
    KKY21010.1 143 LLFEDQTeaeADLVVGGDGIRSVSHSNEGnQMFEIAARRVV 183
                   55555543322333334556666665555336666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.52
# Mc/sec: 2035.25
//
Query:       KKY21011.1  [L=311]
Description: putative thiamin pyrophosphokinase-related protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-07   30.8   0.1    3.6e-07   30.3   0.1    1.2  1  NUDIX     NUDIX domain
  ------ inclusion threshold ------
       0.01   15.8   0.0      0.021   14.8   0.0    1.5  1  DUF4743   Domain of unknown function (DUF4743)


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.1   4.1e-11   3.6e-07      12     127 ..     139     266 ..     127     270 .. 0.71

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 4.1e-11
                 ETTSEEEEEEES..SSSTTT.EE.SSEEECBTTSHHHHHHHHHHHHHHSEEEEEE....EEEEEEEEEEEEEEEEEE..........EEEEEEEEEEEE CS
       NUDIX  12 nekgevLlvrrs..kkpfpg.We.lPgGkvepgEtpeeAArREleEEtGleaell....ellgrlhylapydgpygd..........eheilyvfleev 92 
                  e+ ++++ rrs    + p+  + +++G+v + E+p e  + E+ EE+ l++el+    +       +++y++  g+            +++yv+  ev
  KKY21011.1 139 SEDMRIWVPRRSghLFTYPNmLDtTVAGGVAAHESPFENIVHEADEEASLPEELVreraR----PCGVLTYMTQVGRsetfaesglvHPDCIYVYDLEV 233
                 33445*******987888885555**************************8899966663....3333334333333333466666688899****666 PP

                 CSGCSST.STTTEEEEEEEEHHHHHHHHTHCTHHHH CS
       NUDIX  93 egelepn.denevsevrwvpleellkeklaaesrkl 127
                 +  + p+  ++ev+e+ +++++e+   k a ++ ++
  KKY21011.1 234 NRSVIPKpRDEEVKEFYLMTVDEV---KVALRRGEF 266
                 666666656999************...444444444 PP

>> DUF4743  Domain of unknown function (DUF4743)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.4e-06     0.021      25     118 ..      31     124 ..       4     126 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.4e-06
                 TTEEEEEEEHHHHHHHCT-TTTEEE-SS.....EEEE-TT--SHHHHHHHHHHHHHHHHHTT...SS----S-EEEE-SSTTS---EEEEGGGTGGGT CS
     DUF4743  25 egqqvGlirpdvaeklrkfpdvFevseke....aveLapslktyeeRtaaveevleelreegsfvalkgwRdElYeVrasfsdppllkleRaaaplfG 118
                 +++  G++ p++++ +  +   F++++ +     v  ++ ++t  +  +a +ev+ +  e + f+++ g + E ++++   ++++ +++eR aaplfG
  KKY21011.1  31 DDRIHGYMLPEIVQSMP-WTPEFKIDHIKrvvqLVDCSNGHDTSTACNTAFSEVVTKAIEIDVFKIISGRHSEPFAIV---GAKTPMQVERFAAPLFG 124
                 56677888888887765.44457777766644456667788888899999**************************97...56678***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.52
# Mc/sec: 1796.55
//
Query:       KKY21012.1  [L=415]
Description: putative thioredoxin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-13   48.6   0.0    3.5e-07   29.8   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00025   21.0   0.2       0.28   11.2   0.0    2.3  2  NAD_binding_9  FAD-NAD(P)-binding
    0.00055   19.1   1.5       0.19   10.8   0.1    2.6  3  GIDA           Glucose inhibited division protein A
     0.0063   15.3   0.0       0.14   10.9   0.0    2.2  2  HI0933_like    HI0933-like protein
  ------ inclusion threshold ------
      0.018   14.3   0.1      0.046   13.0   0.0    1.7  2  Thi4           Thi4 family
      0.043   12.9   0.1       0.94    8.6   0.0    2.2  2  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
      0.057   13.7   0.2       0.13   12.5   0.2    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
       0.07   12.4   0.2         11    5.1   0.0    2.8  3  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      0.076   12.2   0.1       0.14   11.4   0.1    1.4  1  FAD_binding_3  FAD binding domain
      0.092   11.8   0.2       0.23   10.5   0.1    1.7  2  FAD_binding_2  FAD binding domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.9e-10   3.5e-07       1     142 [.      39     181 ..      39     208 .. 0.80
   2 !   16.9   0.0   1.7e-06     0.003     233     294 .]     295     354 ..     264     354 .. 0.71

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.9e-10
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH....HHHHCHHHHCCCCHCCTCEEEEESC.EEEEETEEECT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias....evvkklnqgielllgeevvkidpgk.kkvklekkkeg 93 
                  +dv+v+GgGp Gl+a   la+   + +l++++ +    +  ++ ++ + +  + +++     ++ k+ +  e++++ ++ +i++ + + + + +  ++
   KKY21012.1  39 YDVLVVGGGPSGLSALSGLARIRRRAILFDSGAYRNIATRHMHDVIGNDGTIPAVFRekarSQIAKYPTV-EMINA-TISSIENVNnGSYFVAT--DS 132
                  69***************************97777777777889999999999999988888666666655.33333.34444433324455533..46 PP

                  CEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  94 deekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp 142
                  ++++++  k++l tG +  +++ p +++  gk+v  +  ++++++  +p
   KKY21012.1 133 NGQNYTGRKVILGTGMKDIIPDSPDLKQLFGKGVFWCPWCDGYEHRDQP 181
                  789******************************9999999999988877 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.7e-06
                  E-S-EEES-HHCSHCCT-EEEETTEE..E--TTSBESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 233 vavGvrpstelleeklglelderggi..vvdeflrtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                  v    +  +el   +lg+++ e++++      +++tnv g++a+GD     +g  ++++A+ +G
   KKY21012.1 295 VVFPTSQASELG-SQLGVKI-ENDKLmgNLTTKMKTNVAGVWAVGDAN--SDGSTNVPHAMWSG 354
                  444344444554.99*****.666665799999*************88..99999999998876 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.2    0.0019       3.4       2      19 ..      43      60 ..      42      69 .. 0.86
   2 !   11.2   0.0   0.00015      0.28     106     155 ..      97     148 ..      92     149 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0019
  NAD_binding_9  2 ivGaGprGlavlerLlar 19
                   +vG+Gp+Gl++l  L++ 
     KKY21012.1 43 VVGGGPSGLSALSGLARI 60
                   8***********999886 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00015
  NAD_binding_9 106 ellarlpegvtvevhraevvdleeradg.qavll.adgaslaadaVvLAlGh 155
                    ++ ++  +  tve+++a++ ++e+ ++g + v + ++g++++ ++V+L +G+
     KKY21012.1  97 KARSQIAKYPTVEMINATISSIENVNNGsYFVATdSNGQNYTGRKVILGTGM 148
                    55556666679**************999445555378899**********97 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0015       2.6       1      29 [.      40      78 ..      40      93 .. 0.76
   2 !   10.8   0.1   0.00011      0.19      97     150 ..      94     148 ..      89     169 .. 0.86
   3 ?   -2.3   0.0         1   1.8e+03     331     383 ..     308     360 ..     307     367 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0015
                CEEEE-SSHHHHHHHHHHHHTT--EEEE..........E CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi..........t 29
                dv V+GgG +G+ A   +ar   + +L+           
  KKY21012.1 40 DVLVVGGGPSGLSALSGLARIRRRAILFdsgayrniatR 78
                79******************9999999975555555433 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHTSTTEEEEES-EEEEEECT.TEEEEEEETTS-EEEECEEEE--TT CS
        GIDA  97 yskevteklenepnleiieeeveelivee.kkvkgvvtedgetikakavviatGt 150
                 ++++ + ++ ++p +e+i++++++++  + ++  + + ++g+ ++ ++v++ tG 
  KKY21012.1  94 FREKARSQIAKYPTVEMINATISSIENVNnGSYFVATDSNGQNYTGRKVILGTGM 148
                 8999*********************765537777788899**************6 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1
                 E--EEEEEEEE-GGGB-TTSBBSSSBTEEE-CGGG..TB-SHHHHHHHHHHHHHH CS
        GIDA 331 rpGyaieydyvdprqllntLetkkvkgLflAGqin..GteGYeEaaaqGllAGin 383
                 ++G+ ie+d +  + l+++++t+ v g+++ G+ n  G +    a+ +G  A++n
  KKY21012.1 308 QLGVKIENDKLMGN-LTTKMKTN-VAGVWAVGDANsdGSTNVPHAMWSGKAAAVN 360
                 67999999999888.88899998.9999999998744444444444455555555 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   7.7e-05      0.14       1      32 [.      39      70 ..      39      74 .. 0.93
   2 ?    2.0   0.0     0.037        67     128     164 ..     111     148 ..      97     153 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.7e-05
                 -SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakrgkrVllleka 32
                 +dv+v+GgG++Gl a   +a+  +r +l++++
   KKY21012.1 39 YDVLVVGGGPSGLSALSGLARIRRRAILFDSG 70
                 59***************************986 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.037
                  -S--EEEEECETTE.EEEEE..TTEEEEESEEEE---- CS
  HI0933_like 128 letevksvekeedgkfrvkt.kseeeleadklvlAtGG 164
                   + +++s+e+ ++g++ v+t +++++++ +k++l tG 
   KKY21012.1 111 INATISSIENVNNGSYFVATdSNGQNYTGRKVILGTGM 148
                  57789999999999999*9988999***********96 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.6e-05     0.046      15      38 ..      36      59 ..      22      69 .. 0.81
   2 ?   -3.6   0.0       2.8   5.1e+03     104     135 ..     302     333 ..     283     335 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.6e-05
                HTEEEEEEE--SHHHHHHHHHHHH CS
        Thi4 15 yaesDvvivGaGssGLtaayylak 38
                  e Dv++vG+G+sGL+a   la+
  KKY21012.1 36 NLEYDVLVVGGGPSGLSALSGLAR 59
                4689**************888876 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.8
                 HHHHHTSTTEEEEESEEEEEEEEETBTEEEEE CS
        Thi4 104 lskvlqlanvkllnavaveDlivregegvaGv 135
                 +s++  + +vk+ n   + +l ++  ++vaGv
  KKY21012.1 302 ASELGSQLGVKIENDKLMGNLTTKMKTNVAGV 333
                 44444445677777777777777777777776 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1     0.077   1.4e+02       3      25 ..      39      61 ..      36      71 .. 0.65
   2 ?    8.6   0.0   0.00052      0.94     116     165 ..     112     155 ..     101     167 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.077
  K_oxygenase  3 lDligiGiGpsnLsLailleevk 25
                 +D+  +G Gps Ls    l+ ++
   KKY21012.1 39 YDVLVVGGGPSGLSALSGLARIR 61
                 67777777777777666666665 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00052
  K_oxygenase 116 geeveevepdeeeeeelltveskdaegeeeelearnlvlgvGtepkiPev 165
                  ++++ ++e +++     + v +   + + ++++ r+++lg+G +  iP+ 
   KKY21012.1 112 NATISSIENVNNG---SYFVAT---DSNGQNYTGRKVILGTGMKDIIPDS 155
                  6677777777754...566775...456789*****************86 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   7.2e-05      0.13       1      29 [.      43      71 ..      43      85 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.2e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   +vG+G sGl+a + La+ +++  l++++ 
     KKY21012.1 43 VVGGGPSGLSALSGLARIRRRAILFDSGA 71
                   8****************999999999875 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.022        39       1      21 [.      42      62 ..      34      83 .. 0.70
   2 ?    5.1   0.0    0.0064        11     101     134 ..     112     148 ..      94     160 .. 0.81
   3 ?    0.1   0.0      0.22   3.9e+02     243     305 .]     276     337 ..     213     337 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.022
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagl 21
                 +++G+GP Gl+a   l ++  
   KKY21012.1 42 LVVGGGPSGLSALSGLARIRR 62
                 578888888877665555554 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0064
  Pyr_redox_3 101 feeVesvkk.edegfevetske..tyeAkkviiAtGe 134
                  + ++ s+++ +++++ v t+++  +y+ +kvi+ tG 
   KKY21012.1 112 NATISSIENvNNGSYFVATDSNgqNYTGRKVILGTGM 148
                  5678889985667799999886669***********7 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.22
  Pyr_redox_3 243 eeykvktedgkkvevkddvvla.tGykpdlsflkkslfeldedgrpvlteeteetnvpglflaG 305
                   ++ ++++d+++ve + + v+  t   ++l      ++++++d+ +   + ++ tnv g++ +G
   KKY21012.1 276 DRFLLTFSDQSTVERSAFLVVFpTSQASELGSQ--LGVKIENDKLMGNLTTKMKTNVAGVWAVG 337
                  445667777666666555555545444444333..5677777888888888999*****99888 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   7.6e-05      0.14       1      21 [.      38      58 ..      38      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.6e-05
                   EEEEEEE--SHHHHHHHHHHH CS
  FAD_binding_3  1 etdVlIVGaGpaGlmlallLs 21
                   e+dVl+VG+Gp+Gl++ + L+
     KKY21012.1 38 EYDVLVVGGGPSGLSALSGLA 58
                   589***********9976666 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00013      0.23       1      38 [.      40      77 ..      40     103 .. 0.92
   2 ?   -2.0   0.0      0.78   1.4e+03     370     402 ..     305     340 ..     294     346 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggat 38
                   Dv+V+G+G +GL+A   +a+  ++ ++ + + +++ at
     KKY21012.1 40 DVLVVGGGPSGLSALSGLARIRRRAILFDSGAYRNIAT 77
                   9*************999999999999999999888765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.78
                    EEES-EEEBETTSBE...STTEEESSBTEEE-STCE CS
  FAD_binding_2 370 hytmgGvetdengrv...ldadgqpipGLYAaGeva 402
                    ++++ Gv++  +      + + +++++G +A+G + 
     KKY21012.1 305 LGSQLGVKIENDKLMgnlTTKMKTNVAGVWAVGDAN 340
                    666677777665444444778888999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.51
# Mc/sec: 2430.82
//
Query:       KKY21013.1  [L=185]
Description: hypothetical protein UCRPC4_g03930 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       853  (0.0475766); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.47
# Mc/sec: 1191.33
//
Query:       KKY21072.1  [L=550]
Description: putative serine threonine protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-60  203.8   0.1    4.3e-60  203.3   0.1    1.1  1  Pkinase        Protein kinase domain
    6.1e-30  104.4   0.1    8.9e-30  103.8   0.1    1.2  1  Pkinase_Tyr    Protein tyrosine kinase
    6.8e-08   32.7   0.0    1.5e-07   31.7   0.0    1.6  1  FHA            FHA domain
    2.9e-05   23.5   0.0    4.9e-05   22.8   0.0    1.3  1  Kinase-like    Kinase-like
      0.001   18.5   0.1     0.0025   17.2   0.1    1.7  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0038   16.9   0.2      0.016   14.8   0.2    2.0  2  RIO1           RIO1 family
  ------ inclusion threshold ------
      0.036   14.0   0.0       0.12   12.3   0.0    1.8  1  APH            Phosphotransferase enzyme family
       0.14   11.7   0.2        0.3   10.6   0.2    1.6  1  YrbL-PhoP_reg  PhoP regulatory network protein YrbL


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.3   0.1   1.9e-63   4.3e-60      28     264 .]     154     396 ..     139     396 .. 0.86

  Alignments for each domain:
  == domain 1  score: 203.3 bits;  conditional E-value: 1.9e-63
                 EEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH.HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-S CS
     Pkinase  28 AvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle.rkgslseeeakkiakqilegleylHskgiiHrDlK 125
                   K+ + e++ k+ + ++++E +ilk l+hpni+ + ++f ++d++yl++e++ gg+l+++le + g ++e +a  +++qi++gle+lH ++++HrDlK
  KKY21072.1 154 LTKRKRDENRLKSLRAQTQKEAEILKDLSHPNIIGFERMFVTDDTIYLIQELLTGGDLFSYLEsQGGRVNEVDAVVMMYQIVTGLEHLHMNHVVHRDLK 252
                 34444444444555599**********************************************66666******************************* PP

                 GGGEEEETTTE...EEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH.......TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTH CS
     Pkinase 126 peNiLidekge...lKitDFGlakelesssk.ltsfvgtseYlAPEvl.......keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldql 213
                 peNiL+ +k+    + +tDFG a ++e+s+  + +fvgt+eY APE+l       +++ y++++D+WslG+i ++ll g  pfs ++g++++++++ + 
  KKY21072.1 253 PENILLASKASgcrVVLTDFGCAMKMEHSTAkMATFVGTEEYAAPELLrvkdgsrTNEAYTSSIDLWSLGCITATLLIGASPFS-DHGTHQFSQQVARQ 350
                 *******8887899************999888****************999988666889************************.55555455544441 PP

                 HHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 214 ekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                    +++  ++  +++ +++++   kd+++kll  d + R+ta+++ +h+++
  KKY21072.1 351 ---CDL--TYLHASQFWQQLPTRTKDFVQKLLVLDSSARMTARQAHAHEWF 396
                 ...222..4567899***********************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   0.1     4e-33   8.9e-30      24     225 ..     146     354 ..     136     391 .. 0.86

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 4e-33
                  TTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr  24 kekkevkVavKtlkeeateee.keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLe 120
                  ++++++++  K  ++e++ ++ +++  +ea+i+k+l+hpni+ +  + + +++++++ e+++gGdL ++L+++   +++  d + +++q+  G+e+L+
   KKY21072.1 146 SSTRKIRILTKRKRDENRLKSlRAQTQKEAEILKDLSHPNIIGFERMFVTDDTIYLIQELLTGGDLFSYLESQ-GGRVNEVDAVVMMYQIVTGLEHLH 242
                  5677788888888666665553888999********************************************9.************************ PP

                  HTTEEEST-SGGGEEEEE...TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.......EEHHHHHHHHHHHHHHHHTTSSGTTTT CS
  Pkinase_Tyr 121 skklvHrdlaarNvLlse...nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.......ftsksDvWsfGvllwEiftlgespypg 208
                   +++vHrdl   N+Ll++   +  v ++DfG a ++  ++++ k  +     ++ apE l+ k        +ts+ D Ws G ++  ++  g+sp+++
   KKY21072.1 243 MNHVVHRDLKPENILLASkasGCRVVLTDFGCAMKM--EHSTAKMATFVGTEEYAAPELLRVKDgsrtneaYTSSIDLWSLGCITATLLI-GASPFSD 337
                  ****************98443458999*******99..555556666677889******998877889999*************999998.******* PP

                  SHHHHHHHHHHTTEES- CS
  Pkinase_Tyr 209 lkneevleklkegkrle 225
                    ++++ +++ ++  l+
   KKY21072.1 338 HGTHQFSQQVARQCDLT 354
                  *********99887764 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   6.6e-11   1.5e-07       2      68 ..      16      91 ..      15      92 .. 0.86

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 6.6e-11
                EEESS.TTSSEETTSTTSTTTEEEEEEETT........CEEEEEEEESSSSSEEETTEEEST.TSEEEE-TTEEEEE CS
         FHA  2 tiGRs.sdcdivlddpsiSrkHalikfdkg........sgkvyleDlgSknGtfvNgqrigk.gepveLksgdviel 68
                 +GR+ + c++ + dp+iS kH++i++           +  v+ eDl S+nGtf+Ng+ +g+ +    L++gd +++
  KKY21072.1 16 LVGRDmRICQYPVWDPVISNKHLRIHVILYeratdggyEALVFAEDL-SRNGTFLNGTLMGRgKGAFLLSTGDKLRI 91
                69***999****************9666656668899999******9.9*************545678899998876 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.2e-08   4.9e-05     151     239 ..     232     324 ..     193     365 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.2e-08
  Kinase-like 151 lqlirlaanLqakglvhgkftvdnllldekg...glmlggftaLvragtkvvlseve....kgfaPpEllgsrggytrknktkmthkldaWqlGlv 239
                   q++    +L+ + +vh +++++n+ll  k    +++l++f+  ++  ++    +      + +a pEll  + g   + +  +t ++d W lG  
   KKY21072.1 232 YQIVTGLEHLHMNHVVHRDLKPENILLASKAsgcRVVLTDFGCAMKMEHSTAK-MATfvgtEEYAAPELLRVKDG--SRTNEAYTSSIDLWSLGCI 324
                  577777899******************98743348*******99999887763.222346789*********999..557889***********75 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.1e-06    0.0025     121     167 ..     228     273 ..     147     288 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.1e-06
         Kdo 121 rallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                   ++ ++ +  + lh  +v H+dl + nill  ++  + +++l D+ 
  KKY21072.1 228 VVMMYQIVTGLEHLHMNHVVHRDLKPENILLASKA-SGCRVVLTDFG 273
                 456778889999**********************7.9********96 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   7.1e-06     0.016      39     161 ..     155     284 ..     130     288 .. 0.74
   2 ?   -1.9   0.0      0.98   2.2e+03      86     113 ..     287     314 ..     285     319 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.1e-06
                 TCG--GS-HHHHHHHHHHHHHHHHHHHHHTT--S--EEEEETTE..EEEE--EETTEEGGBHHHCG.-..HHHHHHHHHHHHHHHHHHHHTSTEEESS- CS
        RIO1  39 kdrksktnprklvklwaekEfrnLkrleeagvpvPkpielkrhv..lvmefigedgvaapklkdve.e..eeeaeelyeevleemrklykeaglvHaDL 132
                 ++rk   n++k  ++ ++kE ++Lk l++ ++   + + + ++   l+ e++   g     l+    +  e +a  ++++++  ++ l   +++vH DL
  KKY21072.1 155 TKRKRDENRLKSLRAQTQKEAEILKDLSHPNIIGFERMFVTDDTiyLIQELLT-GGDLFSYLESQGgRvnEVDAVVMMYQIVTGLEHLH-MNHVVHRDL 251
                 3456789999*****************99986655555555543237888888.55555666655544445666677788888777766.99******* PP

                 STTSEEEETT....EEEE--GTTEEETTSTTHH CS
        RIO1 133 SeyNvlvded....kvviIDvsQaveldhpnal 161
                    N+l+ ++    +vv+ D++ a++++h  a+
  KKY21072.1 252 KPENILLASKasgcRVVLTDFGCAMKMEHSTAK 284
                 ******976533367999***********9886 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.98
                 E--EETTEEGGBHHHCG-HHHHHHHHHH CS
        RIO1  86 efigedgvaapklkdveeeeeaeelyee 113
                  f+g++++aap+l  v++ + ++e+y  
  KKY21072.1 287 TFVGTEEYAAPELLRVKDGSRTNEAYTS 314
                 599**********999975566666655 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.3e-05      0.12     167     199 ..     245     278 ..     235     280 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.3e-05
                 EEE-SS-SGGGEEEC....TTEEEEE---TT-EEE CS
         APH 167 vllHgDlhpgNllvd..pddgrvtGviDfedaglg 199
                  ++H+Dl+p N+l+   + + rv  + Df++a+ +
  KKY21072.1 245 HVVHRDLKPENILLAskASGCRV-VLTDFGCAMKM 278
                 589************98777777.577*****975 PP

>> YrbL-PhoP_reg  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00013       0.3     127     166 ..     233     271 ..     142     287 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
  YrbL-PhoP_reg 127 aLdefleelldnhivtndlsakNivvkknsegeeelvlvD 166
                    ++ + le+l  nh+v +dl+++Ni+++ ++ g  ++vl D
     KKY21072.1 233 QIVTGLEHLHMNHVVHRDLKPENILLASKASGC-RVVLTD 271
                    55666789999****************999988.788877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.74u 0.35s 00:00:01.08 Elapsed: 00:00:00.56
# Mc/sec: 2933.74
//
Query:       KKY21073.1  [L=1095]
Description: putative phosphatase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-08   32.2   0.0    2.1e-07   30.7   0.0    1.7  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   1.2e-11   2.1e-07      31     220 ..     132     462 ..      63     473 .. 0.73

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.2e-11
                    T..................SEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCH............................................ CS
                    x..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................ RF
  Exo_endo_phos  31 a..................DvlgLQEvdddelsriplllalggflgasstsp............................................ 64 
                    +                  +vlgLQEv d + +         + +++++ s+                                            
     KKY21073.1 132 PtlpnedvaavpagrdigiYVLGLQEVVDISSAS-------EALRPYTDPSTarrwktamenalpsgyqqiaeeqllgllilvyaapdvaptissv 220
                    23444444455556667778******77776555.......44444444444556668999999999999999*********************** PP

                    ......ECSSSTTSSEEEEEECSTE...EEEEEEEEEETSSSSGCEEEEEEEEEEEEEEECCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEE.. CS
                    ......xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
  Exo_endo_phos  65 ......tgggggggnggavlsrfpl...tslfrrtfiefndlvaalrreplaakleqlniashrdhdlvrdlqllalllqvealnadrgapviv.. 149
                          tg  g+ gn+gav +r  l   t++                                                            ++v  
     KKY21073.1 221 sstsvgTGLLGYMGNKGAVSVRLVLgetTRI------------------------------------------------------------IFVdc 256
                    *************************887666............................................................66666 PP

                    ....................................................EEE-SSSTSGGGBSCGHHHHHHCTTTHHSSCESCETTTTTTTTT CS
                    ....................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 150 ....................................................aGDfNarpsdddsrvlrtrglalapapvglyllgggptptyvtr 193
                                                                        +GD+N+                                      
     KKY21073.1 257 hlaagsdkaalerrnwdaaqvvsrtrfdpitdgaadaegfgdgigdedfcfwFGDLNY-------------------------------------- 314
                    6666666666666666666666666666666666666666666666666666******...................................... PP

                    TTEB-B.......................................................................................... CS
                    xxxxxx.......................................................................................... RF
  Exo_endo_phos 194 aggsrl.......................................................................................... 199
                        rl                                                                                          
     KKY21073.1 315 ----RLedipgedvrrllllhtkneydlnnsskrkidselgyvsvqtsedvnapdsddelsldpksdpaslqttlqsllphdqllkqqkirkafhd 406
                    ....55555555555558999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                    ...................................EEEEEECHHHCCEEEEEEECC CS
                    ...................................xxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 200 ...................................Drilaspalalfrsgvlpppl 220
                                                       Dril++++  + r++++++++
     KKY21073.1 407 gwregeidflptykydvgsvgmfdsgekkrgpswcDRILFRTRRDRLRALEQIEQE 462
                    99999999999999999999999999999999999999999877777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1095 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.50
# Mc/sec: 6577.10
//
Query:       KKY21074.1  [L=155]
Description: putative 40s ribosomal protein s18 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-56  190.3   3.2    1.7e-56  190.1   3.2    1.0  1  Ribosomal_S13  Ribosomal protein S13/S18
  ------ inclusion threshold ------
      0.024   13.4   0.0      0.039   12.7   0.0    1.2  1  FbpA           Fibronectin-binding protein A N-terminus (FbpA
      0.028   14.7   0.2       0.13   12.5   0.0    2.1  2  HHH_6          Helix-hairpin-helix motif
      0.069   13.3   0.0       0.16   12.2   0.0    1.5  1  BET            Bromodomain extra-terminal - transcription reg


Domain annotation for each model (and alignments):
>> Ribosomal_S13  Ribosomal protein S13/S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.1   3.2   3.8e-60   1.7e-56       1     128 []      16     144 ..      16     144 .. 1.00

  Alignments for each domain:
  == domain 1  score: 190.1 bits;  conditional E-value: 3.8e-60
  Ribosomal_S13   1 RilgtdidgkkkveialtaikGiGrrkakiilkkadvdedkrigelteeeiekieeivenkaqykipnwi.nrqkdikdGkdshvvendlrrklre 95 
                    Ril+t++dgk+k+++alt+ikG+Grr+++ ++kkadvd +kr+gelt ee+e+i++i++n++qykip+w+ nrq+di+dGkds+v++n++++klre
     KKY21074.1  16 RILNTNVDGKQKIMYALTKIKGVGRRYSNLVCKKADVDLSKRAGELTSEELERIVTIIQNPTQYKIPSWFlNRQRDINDGKDSQVLANQMESKLRE 111
                    9*********************************************************************************************** PP

  Ribosomal_S13  96 dieRlkkirsyrGlRHkrGlkvRGQrTkttgRt 128
                    d+eRlkkir++rGlRH++Gl+vRGQ+TkttgR+
     KKY21074.1 112 DLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRR 144
                    ********************************7 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.7e-06     0.039     189     237 ..      28      75 ..       7      93 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.7e-06
                 XHHHHHHHBTTXXHHHHHHHHTTXSSSH...............HHHHHH CS
        FbpA 189 lvkaLvkafqGlspllaeelleragldketsakelseedlerlyealqe 237
                 +  aL ++++G+++ +++ ++++a +d  ++a el++e+ler+ + +q+
  KKY21074.1  28 IMYAL-TKIKGVGRRYSNLVCKKADVDLSKRAGELTSEELERIVTIIQN 75 
                 44444.5669********************************9988776 PP

>> HHH_6  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     3e-05      0.13      12      75 ..       9      70 ..       5      72 .. 0.68
   2 ?   -1.6   0.0      0.72   3.2e+03      59      79 ..     101     121 ..      86     130 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3e-05
       HHH_6 12 Seadftve......eedgairlGLaaikglgeaaaerivaeRekegpfksledlarrvdslnkrqleaLa 75
                S+ +f +       + +++i+++L++ikg+g++  + + ++ +         dl++r+++l+ ++le+++
  KKY21074.1  9 SNFQFILRilntnvDGKQKIMYALTKIKGVGRRYSNLVCKKAD--------VDLSKRAGELTSEELERIV 70
                6666666344443334455************998887777433........5777777777777777766 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.72
       HHH_6  59 larrvdslnkrqleaLakaGa 79 
                 la++++s  +++le+L k+ a
  KKY21074.1 101 LANQMESKLREDLERLKKIRA 121
                 444444444555555555444 PP

>> BET  Bromodomain extra-terminal - transcription regulation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.5e-05      0.16      10      31 ..      54      75 ..      52      83 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.5e-05
         BET 10 LseeInkLpgeklgrvveIIqe 31
                Ls++ ++L++e+l+r+v IIq+
  KKY21074.1 54 LSKRAGELTSEELERIVTIIQN 75
                899999***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1072.71
//
Query:       KKY21075.1  [L=551]
Description: putative carboxypeptidase y [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.7e-128  428.2   0.8   5.7e-128  427.9   0.8    1.1  1  Peptidase_S10  Serine carboxypeptidase
    3.7e-15   56.6   0.4    9.8e-15   55.2   0.4    1.7  1  Carbpep_Y_N    Carboxypeptidase Y pro-peptide


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  427.9   0.8  6.4e-132  5.7e-128       7     418 ..     143     546 ..     136     547 .. 0.93

  Alignments for each domain:
  == domain 1  score: 427.9 bits;  conditional E-value: 6.4e-132
                    -SSEEEEEEEECSTTTTEEEEEEEEE-SSGTTTS-EEEEE--TTTB-THHHHHHTTSSEEEETTTTSEEEE-TT-GGGCSEEEEE--STTSTT-EE CS
  Peptidase_S10   7 vnfkqysGYldveeeedkslFYwfveseknpeedplvlWLnGGPGCsSldGlleElGPfrvnkdstkkleenpysWnkvanvlfldqPvGvGFSys 102
                    + +kqysGYld + e+dk+lFYwf+es+++p++dp+vlWLnGGPGCsS++Gl++ElGP +++  ++ k+++npysWn++a+v+fldqPv++G+Sys
     KKY21075.1 143 PGVKQYSGYLDDN-ENDKHLFYWFFESRNDPKNDPVVLWLNGGPGCSSMTGLFFELGPSSID--KNAKPVYNPYSWNSNASVIFLDQPVNTGYSYS 235
                    679*********9.77**********************************************..679***************************** PP

                    TTSSGS--SHHHHHHHHHHHHHHHHHHSTCGTTSEEEEEEETTHHHHHHHHHHHHHTHCCH--SSTSEEEEEEEESE-SBHHHHHCCHHH....HH CS
  Peptidase_S10 103 ntksdvktddeevaedlyefLkkffekfpeyksrdfyitGESYaGhyvPalakeilkknkkekkkkinLkGlligNglideaeqvnsyve....fa 194
                    +++ +   ++  +++d+y++L+ ff++fpey+++df+i+GESYaGhy+P++++eil+++k+    +inLk+++igNgl+d  +q+++y +      
     KKY21075.1 236 SNSVS---NTVAAGKDVYALLTLFFKQFPEYATQDFHIAGESYAGHYIPVFTSEILSHKKT----NINLKSIMIGNGLTDGYTQYEYYRPmacgEG 324
                    **999...9**************************************************98....8************************555555 PP

                    HHTTSSHHHHHHHHHHHHEETHHHHHHHHHHHHHHHHHHHHH..........HHHHCH....CEETTETTSEETTSSEEHHHCTTCCCCTTTTTCH CS
  Peptidase_S10 195 yehgliseeeyeslkkacekkeeleqesekcanllekaskva..........vekenk....glnvynileeccklkaelkksstdaqggedpyde 276
                     + ++++e++++ ++++     ++++ +e+c+n+ + +s+v                     g+n+y+i+ +c            +++++ ++   
     KKY21075.1 325 GYPAVLDESTCQAMDNSL---PRCQSLIESCYNSESVWSCVPasiycnnamiG----PyqrtGMNPYDIRGPC------------EDNSNLCYSGL 401
                    566789999999998888...9*****************98796655555543....05555***********............6788999999* PP

                    HHHHHHHTSHHHHHHTT--TTSSS--SB-HHH...HHHCTCCC-SBCHHHHHHHHHTT-EEEEEEETT-STT-HHHHHHHHHHTECTTECCSCCCE CS
  Peptidase_S10 277 syvekylnkkeVrkalhvnasvkkweecndsv...feqleddisksveeileellesglrvliynGdvDlicnvlgteawikklelsgkkefrpwe 369
                      ++++lnk+e  kal+  a+v+ +e+cn +v   f +++d++ k+++++++ +le+ ++vliy+Gd+D+icn+lg+  w++kle+sg+k+f++ +
     KKY21075.1 402 GPISEFLNKPETLKALG--AEVDGFESCNFDVnrnFLFQGDWM-KPFHRLVPGILEK-IPVLIYAGDADFICNWLGNYGWSDKLEWSGHKDFSASK 493
                    *****************..6799*********98766655555.*************.************************************** PP

                    EEE....TTTCESEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHHHHHHT CS
  Peptidase_S10 370 vsp....kkengqvaGyvkeyenltfltvkgaGHmvPedkpeealqllerfis 418
                     +p      ++++++G+v+  +n+tf+++++aGHmvP+d+pe++l+ ++r+++
     KKY21075.1 494 LTPltlgGAKDSHEYGKVRGSGNFTFMQIFEAGHMVPYDQPEASLDWYNRWLA 546
                    *999999999*****************************************97 PP

>> Carbpep_Y_N  Carboxypeptidase Y pro-peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.4   1.1e-18   9.8e-15       1     123 [.       1     105 [.       1     106 [. 0.85

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 1.1e-18
  Carbpep_Y_N   1 mklsts.lllgaassatslqalsiqnplkdlQqalklelnydtkklsklleeeekknnvfekiskvlneplkeltseakkiWsemelkfPdavsklkf 97 
                  mkl ts ll+g+a +a++ q    q++l   Q +  +         s+ +  +e++ + ++k  + l++ lk+lt+e ++iW+e+   +P+ + k++f
   KKY21075.1   1 MKLLTStLLAGVAAAAVAPQ----QHVL---QPPKDF---------SEKV--AEQVSESISKPLHQLEDVLKTLTAEGRAIWDEVAKMYPEDMAKATF 80 
                  99999988888888888877....5555...555555.........3333..6788999*************************************** PP

  Carbpep_Y_N  98 ktkpkkketkksdkfWdfvVkdakvp 123
                   + ++kk+t+ +d+ Wd+ V ++ ++
   KKY21075.1  81 FS-QPKKHTRRPDSEWDHIVRGKHIQ 105
                  *8.66669**************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 3296.97
//
Query:       KKY21076.1  [L=402]
Description: hypothetical protein UCRPC4_g03871 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-32  111.6   0.0    2.4e-32  110.8   0.0    1.4  1  SBDS      Shwachman-Bodian-Diamond syndrome (SBDS) protein
    1.7e-32  111.8   0.0    2.7e-32  111.2   0.0    1.3  1  SBDS_C    SBDS protein C-terminal domain
  ------ inclusion threshold ------
      0.032   14.2   9.3      0.051   13.6   9.3    1.2  1  DUF4614   Domain of unknown function (DUF4614)


Domain annotation for each model (and alignments):
>> SBDS  Shwachman-Bodian-Diamond syndrome (SBDS) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8   0.0     4e-36   2.4e-32       1      88 []      16     104 ..      16     104 .. 0.98

  Alignments for each domain:
  == domain 1  score: 110.8 bits;  conditional E-value: 4e-36
                 T-EEEEEEETTEEEEEEE-HHHHHHHHCTT---HHHHBSSSS-EEETTTTEE--HHHHHHHHS--.-HHHHHHHHHHHSEEE--HHHHH CS
        SBDS   1 nvsivrykkgkkrFeiavyknklleyregkeidLsevlqsekiFtnaskGetaskselekafgte.skdeiikeILkkGeiqvsaeerk 88 
                 n s+vr+kkgkkrFeia+yknklleyr+g e+dL++vlq++++F+++skG+ta+k++l kafg+   +d+ii eILkkGe+qv a erk
  KKY21076.1  16 NISLVRLKKGKKRFEIACYKNKLLEYRSGLETDLDNVLQVPTVFLSVSKGQTAPKDDLVKAFGKGtGNDDIIVEILKKGEVQVGAGERK 104
                 789*************************************************************9889*****************9996 PP

>> SBDS_C  SBDS protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.2   0.0   4.6e-36   2.7e-32       1     115 [.     110     380 ..     110     381 .. 0.95

  Alignments for each domain:
  == domain 1  score: 111.2 bits;  conditional E-value: 4.6e-36
                 HHHHHHHHHHHHEEBTTTTB---HHHHHHHH.................................................................... CS
      SBDS_C   1 iekeiieivaeklvnpqtkrpytttmIekal.................................................................... 31 
                 ie+e++e+v+++lv+p+tkr+ytt+mI kal                                                                    
  KKY21076.1 110 IEREVVELVSQRLVDPETKRVYTTGMIRKALdllsrqagqmhqgalpseatrnqlnadaregeggsaeeeqagymglgkldinddyddhsstsrshknk 208
                 689************************************************************************************************ PP

                 ..................................................HHTT----TTS-CCCCHHHHHHHHT..TTS--EE-EEEEEEEE-..... CS
      SBDS_C  32 ..................................................kelgtsvktnksaksQalevikaLi..qeipiqrarmrlritcptsi.. 76 
                                                                   ++++t+v+t+k+ k+ ale++kaLi  q+ip qrarmrlr+++p si  
  KKY21076.1 209 ksstkksskntttkpkpkdnpdsdtdtdlhhhhhqetpptttmttdntsqTPTWTGVSTTKPPKALALEAMKALIyhQPIPCQRARMRLRVNIPLSIak 307
                 *************************************************99***********************999*****************9999* PP

                 ..............................CCCH.HHHHHHHHH........S.EEEEEEEEGGGHHHHHHHH CS
      SBDS_C  77 ..............................kdki.lklieqvesqk...vaekewevvvliePgaykeleefv 115
                                               k+ i ++++eq+es++   +++++we+++++ePg+yk+l e++
  KKY21076.1 308 tniklkpvvdtfdspqnpngppkpttsltlKSLIqTQYFEQIESDEfldTSGGDWEITGFVEPGVYKGLTELI 380
                 **************************9998555524688888887765566677****************998 PP

>> DUF4614  Domain of unknown function (DUF4614)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   9.3   8.6e-06     0.051       4      89 ..     192     278 ..     190     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.6e-06
     DUF4614   4 sedfessssssesessssssessssrslssssesslssksssstdsksssqssestkkrskt.ktrttvketavqTsdpalayqwtk 89 
                 ++d+ + ss+s+s+++++ss+++ss+ ++++ + + + +s+++td++ ++++++++ +   t +t++t + t+v T++p+ a   ++
  KKY21076.1 192 NDDYDDHSSTSRSHKNKKSSTKKSSKNTTTKPKPKDNPDSDTDTDLHHHHHQETPPTTTMTTdNTSQTPTWTGVSTTKPPKALALEA 278
                 689999999999999999999999999999999999999999999988777777766666656899999999999999987776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1374  (0.0766356); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 2851.27
//
Query:       KKY21077.1  [L=882]
Description: putative acetoacetylsynthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-39  134.6   0.0      5e-39  134.1   0.0    1.2  1  AMP-binding    AMP-binding enzyme
    1.3e-13   51.4   0.0    2.7e-13   50.4   0.0    1.5  1  DUF1772        Domain of unknown function (DUF1772)
    0.00032   20.6   3.2      0.003   17.4   0.3    2.7  2  ACAS_N         Acetyl-coenzyme A synthetase N-terminus
      0.002   19.1   0.0     0.0066   17.4   0.0    1.9  1  AMP-binding_C  AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
       0.14   12.1   0.0       0.24   11.3   0.0    1.3  1  Peptidase_M54  Peptidase family M54


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.1   0.0   1.4e-42     5e-39       7     419 ..     296     742 ..     290     745 .. 0.82

  Alignments for each domain:
  == domain 1  score: 134.1 bits;  conditional E-value: 1.4e-42
                  HSTTSEEEEE....CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE. CS
  AMP-binding   7 ktpdkvalvd....sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli. 99 
                  k  dk+a++     + e + +T+++l+ r+ rlA++++++Gv+kgdrVa+++ ns++ +v+llai  +G++ +  +++ + +     l + ++k ++ 
   KKY21077.1 296 KEDDKIAITEvregGMEKRNITWKDLRIRTARLAQAMKARGVTKGDRVAVVASNSLDTLVVLLAITTLGGIFSSSSTDVGIKGNLDRLLQIRPKWVFf 393
                  555999997788998899********************99********************************************************** PP

                  ........ETCTCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS...........-TSCCCS-BTTSEEEEEEE--SSSS-EEE CS
  AMP-binding 100 ........atvdsel.leklleaaakleavklvivldadellkeeelkeeeeseekae...........kpeeeeelkpddlayiiYTSGTTGkPKGV 177
                          ++vd ++ +  + e ++    ++ + v++  ++l+ + +++++ s++ +            +++e ++ + +++ +i+Y+SGTTG PK +
   KKY21077.1 394 ddfavyngKAVDLRQkMRDVVEGMS--GIREFEGVVSMPRFLDRRAANISAVSKATKLreflgqfgeadEEPEFVRGDFSTPFIIVYSSGTTGSPKCI 489
                  *998775425666665666666665..4566777788888888888888888776662467788999985558889999******************* PP

                  EEEHHHHHHHHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGC.CHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHH CS
  AMP-binding 178 mlshrnlvanvaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaa.ldpklllelieklkvtviagvPrvleallesgalk 274
                  ++  +n + ++++ +++ ++ ++++++vl++    +i+ l  +  +al++Ga+vvl++++++ +d ++l++l + ++vt++   Pr l+ l ++g   
   KKY21077.1 490 VHGAGNCIISASK-EFRLHRTTSHKSKVLQFTTTGWIMYL--SNPYALMVGASVVLYDGSPFiPDLTTLIKLASSERVTHFGISPRYLQELEKNGIVP 584
                  **********777.56666666679**************6..77889999************999999***********************9977776 PP

                  CHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTC...EEEEEEEEGGGSSEC.EECHCTTTCTSTTS-B....EE-TTEEEEEE..-TTTSCBEETT CS
  AMP-binding 275 aakkakdlsslrlvllggeplspellrffralfge...evlegYGlTEttgvv.tvlpleedkkklgsvG....kplpgvevkiv..Deetgepvpdg 362
                    k+  +l +l++v + g  ls +l ++f++++ +   ++ ++ G T  +g++ +  ++ ++  + g +G    +p    ++ i      +g+pv+dg
   KKY21077.1 585 --KEVANLEALEVVTSTGMVLSDALFEWFYDIGFPenvHLDNISGGTDIAGAFgS-GNPLDPLYVGGCQGlclgTPTVVYDATIEggSGVHGRPVKDG 679
                  ..34448999**********************999999999***********953.333333333333344444777777777775555569****** PP

                  SEEEEEEEET..TS-SEBTT-HHHHHHHEEE...T.CC.EEEEEEEEEEETT.SEEEEEEECCCE CS
  AMP-binding 363 eeGellvrgp..gvmkgYlkkpeataeafds...e.gr.wlrTGDlgrlded.GyleivgRkkdl 419
                  ++Gel+  +   ++   ++++    ++ fds      + w + GD + +++   ++ ++gR++ +
   KKY21077.1 680 VPGELVAFSTfpNMPVAFWGE-NGKQKYFDSyfsRyREvWTH-GDFVMVHPVtKQIAFLGRADGV 742
                  ******665444888899997.44455666566534343555.******995478******9976 PP

>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   7.5e-17   2.7e-13      19     125 ..      63     187 ..      21     189 .. 0.73

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 7.5e-17
     DUF1772  19 assslllkqwrrlfkrgkavfpplallsalafayla....araasrgarllylaaaallllsivpyTllvmvPtNnkLaal..............keed 99 
                 ++ss+l++qw++lf++gk+  p++ ++s+++++ +a    ++ ++r++r  +laaa ll l ++p+Tl++m PtN +L+++              +  +
  KKY21077.1  63 TTSSHLARQWAKLFDIGKKKGPLTIVVSVVCYVGAAislpKDFRGRETRIKLLAAATLLDLLVFPFTLTFMHPTNLQLISRaqqaespigddidqTLGT 161
                 333449***************************7778***6666666666665766667788*************888888566666666655431222 PP

     DUF1772 100 akekedeaevrellerWgrlnlvRav 125
                  ++++    +++l++rW+   ++R++
  KKY21077.1 162 VTQESPYVRTEDLIRRWEGDDFARSL 187
                 22222336666678899887777776 PP

>> ACAS_N  Acetyl-coenzyme A synthetase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.3   8.4e-07     0.003       2      54 ..     218     279 ..     217     280 .. 0.77
   2 ?    2.8   0.2     0.032   1.1e+02      12      34 ..     694     716 ..     688     725 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 8.4e-07
                 HHHHHHHHH-HHHHHHHHHCC..S--SB...--S-SECSTTTC....T-EESTT-EE-HHHH CS
      ACAS_N   2 kelykeSiedpeaFWaeqake..ldWek...pfdkvldgskgp....fikWFeGGklNicyN 54 
                 ++ly++Si++  +FW +  +   l ++    p ++v++ s +     +  WF+G klN ++N
  KKY21077.1 218 NDLYQYSITHRPQFWLHCFRFfpLVYSGnapPLERVFNASAPMsqveNHNWFPGVKLNWAEN 279
                 589*****************655555442224679**99853323458***********999 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.032
                 HHHHHHHHHCCS--SB--S-SEC CS
      ACAS_N  12 peaFWaeqakeldWekpfdkvld 34 
                 p aFW+e  k+ +++  f++  +
  KKY21077.1 694 PVAFWGENGKQKYFDSYFSRYRE 716
                 889*******9888888877665 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.9e-06    0.0066      11      76 .]     766     835 ..     760     835 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.9e-06
                    TEEEEEEE-----TTS.---EEEEEE------...HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C  11 aVaeaaVvGvpdevkG.ealvafVvlkdgsea...leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    +V++  +vG + + +  e+++ f+  ++g ++   l +++k+ +rkel p  vpk+++ ++++p t + K
     KKY21077.1 766 DVQDSICVGQRRPQDSdETVMLFILMRQGRNLtmrLIQDIKSTIRKELSPRHVPKYIIETPAIPTTINMK 835
                    699999*******7776999999999888433457*******************************9876 PP

>> Peptidase_M54  Peptidase family M54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.8e-05      0.24      28      77 ..     833     882 .]     828     882 .] 0.96

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.8e-05
                    HHHHHH-S-E.EEEEE----..........GGGEETTTTEEEHHHHHHHH CS
  Peptidase_M54  28 flsdvglevkivyagrikLPpgllirveteegavkmyrleavveallgkL 77 
                    ++++v+l+vk + +g+i  P g+l   e+ + +++  ++e ++e+l +kL
     KKY21077.1 833 NMKKVELPVKQIISGKIVQPSGTLANPESLKFFYQFSKIEEIAEKLQSKL 882
                    799*******************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (882 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 5583.03
//
Query:       KKY21078.1  [L=494]
Description: putative allantoate permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-38  130.8  20.4    5.5e-38  130.8  20.4    1.5  2  MFS_1     Major Facilitator Superfamily
    5.4e-06   25.9  11.8    7.9e-06   25.4   2.7    2.2  2  MFS_4     Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
        0.1   12.8   0.1        4.4    7.6   0.0    2.7  2  ESSS      ESSS subunit of NADH:ubiquinone oxidoreductase (com
       0.11   12.6   0.0       0.28   11.3   0.0    1.7  1  DUF809    Protein of unknown function (DUF809)
       0.36   10.1   7.2       0.11   11.8   0.5    2.7  3  EXS       EXS family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.8  20.4   1.5e-41   5.5e-38       2     353 .]      57     421 ..      56     421 .. 0.81
   2 ?   -2.2   0.0      0.41   1.5e+03     251     267 ..     443     457 ..     431     468 .. 0.48

  Alignments for each domain:
  == domain 1  score: 130.8 bits;  conditional E-value: 1.5e-41
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 + ++ l +l+ ++++ a  + l+ed +i+ ++++ l+ +++++++++ +p+G+l++r+   ++l + ++l+++ +++ +  ++ +  l+ lrvl G ++
  KKY21078.1  57 WACYNLQYLDKTLINYANVMGLGEDTHIDSDQFSQLALVFYVTYLAFEFPTGYLMQRLPTAKYLGVNVVLWGIIITCTSA-ANNFgSLVTLRVLLGCFE 154
                 78999*********************************************************************777774.66666************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee.... 188
                 +a++pa + + + w++k e+   ig++++g++ G+i+g l +  +  ++       W+ +f++++++++ +++l++++lp++p ++  +++++ +    
  KKY21078.1 155 SAVAPALILISTMWYKKAEQVPRIGFWYVGTGTGTIIGSLTSFGFQ-HYEgqqfssWQIMFLVFGLITIAVGILVFFVLPDNPMSSFLSREEKVWaier 252
                 **************************************76666555.555599999*****************96666655555555555555559999 PP

       MFS_1 189 .......kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrls.drlgrrrrlll 279
                        +  ++++l +   + ++dp+ w+l i+ ++  + + +++++  ++  + +g++   +++l l++++ v+a+++++++ +s  r+++r + ++
  KKY21078.1 253 lrenktgVENKHFKLYQ-ALECFRDPQTWLLSIITISSNVPNGAVSSYQATI-IKGFGYT-SKETAL-LSIPSGVVAMISVIGATWSaGRFNKRGFFII 347
                 88888666667777777.5555666669955555555555777799999996.*******.455554.55555555555566666666*****988888 PP

       MFS_1 280 allllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                 all+  ++  +l+ + ++  +v  l++ +l  + ++    ++  + +++a+  +  t++++  + ++lg ++gp
  KKY21078.1 348 ALLIPGVLGGCLLAFLPSGYKVGKLIGNYLTNCIGASLPLLYSWCGANFAGHTKKVTMNAILLMSFCLGNIIGP 421
                 888888888888888888899999999999777444444444445555557777889999999**********8 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.41
       MFS_1 251 allalvgailallagrl 267
                   +a+++   ++l+g++
  KKY21078.1 443 VSFAIIMT--FVLLGYY 457
                 22222222..2344444 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   2.7   2.2e-09   7.9e-06      21     170 ..      80     233 ..      53     250 .. 0.80
   2 !    5.7   1.8    0.0021       7.5     235     334 ..     321     424 ..     300     448 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.2e-09
       MFS_4  21 aegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGv...asAvvlvfgsslvlahaaaarre 116
                 ++++++  q + la + y+ YL+  +   + +++ ++   l + +++  + +   +++++f  ++ +R+l+G    a A +l+++s++  ++   a++ 
  KKY21078.1  80 EDTHIDSDQFSQLALVFYVTYLAFEFPTGYLMQRLPTAKYLGVNVVLWGIIITCTSAANNFGSLVTLRVLLGCfesAVAPALILISTMWYKK---AEQV 175
                 7888899999999999999999877766666666666666888999999999999*****************74334555799999999999...5566 PP

       MFS_4 117 rvgallfaGvGlGiavsgllvllllqlglsasslWlal....avlsavllllvalllp 170
                   +++ + G G G ++++l     ++++ ++ s+W+++    +++ +++ +lv+ +lp
  KKY21078.1 176 PRIGFWYVGTGTGTIIGSLTSFGFQHYEGQQFSSWQIMflvfGLITIAVGILVFFVLP 233
                 668999***************9999999888888876511115666666666666666 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0021
       MFS_4 235 vGlaaivgvlvwlrvakrsglrralaaallieav...gvllsllspsplglivssvllGltflaitalvlqlarelappat.rrllglmTasfgigQil 329
                  G+ a+++v   ++ a r + r  + +alli +v   ++l+ l s   +g +++  l+         l    + ++a++++  ++ +++ +sf +g i+
  KKY21078.1 321 SGVVAMISVIGATWSAGRFNKRGFFIIALLIPGVlggCLLAFLPSGYKVGKLIGNYLTNCIGASLPLLYSWCGANFAGHTKkVTMNAILLMSFCLGNII 419
                 6999***************************998775666666666677778887777666666666666677888899885566688999******** PP

       MFS_4 330 Gplla 334
                 Gpl +
  KKY21078.1 420 GPLTF 424
                 **976 PP

>> ESSS  ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0012       4.4      36      86 ..     195     245 ..     192     262 .. 0.66
   2 ?    2.0   0.0     0.067   2.4e+02      50      74 ..     340     364 ..     287     367 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0012
        ESSS  36 dshGfdkdpvedkenmeavfffgvsivlVlgsvfvaY.lpdtsiqeWArrEA 86 
                 +s+Gf++ + ++ + ++++f   + ++ ++ ++ v + lpd+ +     rE 
  KKY21078.1 195 TSFGFQHYEGQQFSSWQIMFL-VFGLITIAVGILVFFvLPDNPMSSFLSREE 245
                 68*****99999999998875.44444444444444428****999855553 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.067
        ESSS  50 nmeavfffgvsivlVlgsvfvaYlp 74 
                 n +  f++++ i  Vlg+  +a+lp
  KKY21078.1 340 NKRGFFIIALLIPGVLGGCLLAFLP 364
                 66778999***************99 PP

>> DUF809  Protein of unknown function (DUF809)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.8e-05      0.28      68      95 ..     279     306 ..     250     315 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.8e-05
      DUF809  68 gwlgvkitiksnvpndevtkkvspiikg 95 
                  wl   iti snvpn  v+   + iikg
  KKY21078.1 279 TWLLSIITISSNVPNGAVSSYQATIIKG 306
                 799999*********************9 PP

>> EXS  EXS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5     3e-05      0.11      16      90 ..      56     131 ..      51     162 .. 0.66
   2 ?   -1.3   0.1       0.3   1.1e+03      71      94 ..     209     233 ..     180     259 .. 0.46
   3 ?    1.1   0.2     0.055     2e+02      46      95 ..     399     450 ..     314     470 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3e-05
         EXS  16 llwalnlhvlsklginyalifeldprsslsyrqlyelaallllllll.lllllllsaevdalellpllllllllll 90 
                 +  + nl++l+k+ inya ++ l + ++ +  q+ +la ++++++l+  +   +l ++  ++++l + ++l+ +++
  KKY21078.1  56 MWACYNLQYLDKTLINYANVMGLGEDTHIDSDQFSQLALVFYVTYLAfEFPTGYLMQRLPTAKYLGVNVVLWGIII 131
                 44578******************999**********9999998888833333444333334444433333322222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.3
         EXS  71 aevdalellpl.llllllllllllp 94 
                 ++ +++ ++ l ++++++l++++lp
  KKY21078.1 209 SWQIMFLVFGLiTIAVGILVFFVLP 233
                 2222333333312333344444444 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.055
         EXS  46 yrqlyelaalllllllllllllll.saevdalellpl.llllllllllllpl 95 
                 +++ +++ a+ll+ ++l  ++  l   e da++++p+ +++++++ + ++ +
  KKY21078.1 399 HTKKVTMNAILLMSFCLGNIIGPLtFREGDAPDYIPAkITIVVTVSFAIIMT 450
                 5555556666666666643432222335556677766544444444433332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       839  (0.0467957); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.49
# Mc/sec: 3022.56
//
Query:       KKY21079.1  [L=619]
Description: putative 5-aminolevulinate synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-85  287.1   0.0    2.9e-85  286.6   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
      7e-06   24.8   0.0    1.3e-05   24.0   0.0    1.3  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    0.00015   21.2   0.2    0.00025   20.5   0.2    1.3  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    0.00029   19.9   0.0    0.00054   19.0   0.0    1.4  1  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
       0.13   12.8   4.7       0.64   10.5   4.7    2.1  1  Preseq_ALAS      5-aminolevulinate synthase presequence
       0.15   12.1   0.0       0.34   10.9   0.0    1.6  1  Cytomega_TRL10   Cytomegalovirus TRL10 protein


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.6   0.0   9.6e-89   2.9e-85       2     363 .]     181     540 ..     180     540 .. 0.98

  Alignments for each domain:
  == domain 1  score: 286.6 bits;  conditional E-value: 9.6e-89
                    EEEESSSSSTTSTTSSHHHHHHHHHHHH..HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-E CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaeke..galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgde 95 
                    +v+ ++sn+ylg++++  + e+++++ +  ga+aggt+n++g+++++  le++la++++        +e+a+v++s++ a++++l++l +++p ++
     KKY21079.1 181 KVTVWCSNDYLGMGRNKKVLEAMHKTLDtyGAGAGGTRNISGHNQHAVGLEKTLADLHH--------KEGALVFSSCYVANDATLATLGSKMPNCV 268
                    7899************9******************************************........***************************** PP

                    EEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTT CS
  Aminotran_1_2  96 ilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYa 191
                    il++++++as+++++r+sg++   y+       h+dl +le++l+++ +  +  k+i++es+++++G+va+ e++++l   a+ky++++f+De++a
     KKY21079.1 269 ILSDSLNHASMIQGIRHSGAKKLVYK-------HNDLVDLEAKLASLDPATP--KIIAFESVYSMCGSVAPIETICDL---ADKYGAITFLDEVHA 352
                    **************************.......***************9999..************************...*************** PP

                    TCBSSSSHTHHH................HGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 192 gfvfgsldavat................ranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkq 271
                    ++++g+++a  +                  +v+++++ +i+g+l+Ka+G++G   Gyi+g+a +v+ +r+l+ +f+++++l++a++a +++a ++q
     KKY21079.1 353 VGMYGPHGAGVAehldygvyasegnlptKGTVMDRID-IITGTLGKAWGCVG---GYIAGSAVLVDMIRSLAPGFIFTTSLPPATMAGARAAIEYQ 444
                    *****9977777889**********************.**************...***************************************** PP

                    HHHHHHHHHHHHHHHHHHHHHHHSTEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTS...TTEEEEEC.TTS-HHHHHHHHHHH CS
  Aminotran_1_2 272 seleemrqrlqkrrkelrdeLaelglkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftv...pgrlRitv.Aglteeeleelveal 363
                     +++  r   q +++ ++d+L++++++v++++s++++l +++ae ak++s++Ll  +g+yv++++++tv   ++rlRit+ +g+t+e  +elv+al
     KKY21079.1 445 ASFQGDRTLQQLHTRAVKDALEAKDIPVIPNPSHIVPLLVGDAELAKKASDMLLSDHGIYVQAINYPTVprgEERLRITPtPGHTQEFRDELVTAL 540
                    ********************************************************************************************9986 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   4.3e-09   1.3e-05      54     180 ..     227     355 ..     221     359 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 4.3e-09
                      HHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-T.TEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCT.TEEEEEEES CS
  Cys_Met_Meta_PP  54 rsvleeriaaLeggeaalavssGmaAiaaailallka.GdeivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaike.ntklvylEt 145
                         le+++a+L++ e al++ss   A +a++ +l ++  + +++sd+l   +  +  +     ++ +k+ d  dle+  + +++   k++ +E+
       KKY21079.1 227 AVGLEKTLADLHHKEGALVFSSCYVANDATLATLGSKmPNCVILSDSLNHASMIQGIRHSGAKKLVYKHNDLVDLEAKLASLDPaTPKIIAFES 320
                      5569*****************************9877477788888888887776666666677889999999999999999994559****** PP

                      S-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTT CS
  Cys_Met_Meta_PP 146 ptnpllkvvDiekiaklakkagvlvvvDntfaspl 180
                      + +   +v+ ie+i++la k g+++++D + a ++
       KKY21079.1 321 VYSMCGSVAPIETICDLADKYGAITFLDEVHAVGM 355
                      ****************************9887765 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   8.2e-08   0.00025      22     151 ..     224     355 ..     214     373 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 8.2e-08
                      SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEE.SSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTEEE CS
  DegT_DnrJ_EryC1  22 gpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvp.sltFvatanavlelgakpvfvDvdpdtynidpaaieaaitertka 114
                      +++   +Ek +a+ ++++ a+ +ss+  A+  +L  lg +  + VI   sl+ ++ ++ ++++gak       ++   +d +a  a + + t  
       KKY21079.1 224 NQHAVGLEKTLADLHHKEGALVFSSCYVANDATLATLGSKMPNCVILSdSLNHASMIQGIRHSGAKKLVY---KHNDLVDLEAKLASLDPATPK 314
                      5566679*********************************888888772677777789*******98643...333466777777777888855 PP

                      EE....EB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT- CS
  DegT_DnrJ_EryC1 115 Il....pVhlyGqvadmdalkaiaakhglkvieDaAhAlGa 151
                      I+    +  + G va ++ + ++a+k+g + + D  hA+G 
       KKY21079.1 315 IIafesVYSMCGSVAPIETICDLADKYGAITFLDEVHAVGM 355
                      55122134689****************************95 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.8e-07   0.00054      14     181 ..     198     354 ..     195     358 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.8e-07
                  HHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHH CS
  Aminotran_5  14 eVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakr 111
                  +Vl+a+ +   d ++++  ++ + + + ++     ++++a+l++ e    ++f s+   a+ + + +l+   k  ++++++++  ha +  +q ++  
   KKY21079.1 198 KVLEAMHKT-LDTYGAGAGGTRNISGHNQH-AVGLEKTLADLHHKEG--ALVFSSCYV-ANDATLATLGS--KMPNCVILSDSLNHASM--IQGIR-H 285
                  677777777.44666665666666664444.4457778888887774..566655544.77777777743..44455555555555555..48887.4 PP

                  HTEEEEEEEBETTSCBEGGGHHHH--.TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTT CS
  Aminotran_5 112 tgakvkvipldeegeldldeleklln.ektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavg 181
                   gak  ++  +++ ++dl++  + l+  ++k++a+  v ++ G + p+e i++la k+ga++++D + avg
   KKY21079.1 286 SGAK--KLVYKHNDLVDLEAKLASLDpATPKIIAFESVYSMCGSVAPIETICDLADKYGAITFLDEVHAVG 354
                  4655..445556889999999999994567*************************************9987 PP

>> Preseq_ALAS  5-aminolevulinate synthase presequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   4.7   0.00021      0.64       7      92 ..      12     105 ..       8     121 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00021
  Preseq_ALAS   7 CPFlsrvpqaflqkarks............LlsyAqkCPvmmelaaralstsaaalqka.keetpvakeeakeakklplahpspaasqavaskCPFla 91 
                  CPFl++ + a+l+   ++            L + A++CPvm     +al+  +a+ +++  ++t++ak  a ++  ++ + +++a  +a++++ PF a
   KKY21079.1  12 CPFLNKTSPATLRTLSTAthqspgggtitnLQFIARRCPVMS----KALAVQSARNRTTnFSTTSSAKVGAFKSV-VSKKLHTSAERKANVEQTPFKA 104
                  8888877777776533211112222222228899*******5....77776555554440457777777776554.4444445557788888889865 PP

  Preseq_ALAS  92 a 92 
                  +
   KKY21079.1 105 N 105
                  4 PP

>> Cytomega_TRL10  Cytomegalovirus TRL10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.34      77     133 ..      57     112 ..      40     124 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
  Cytomega_TRL10  77 fviyareeeknntgtevdqclayrsltrkkleqhaakkqniyeripyrpsrqkdnsp 133
                      v  ar++  n + t   ++ a++s+  kkl+  a +k n+ e+ p++   q    p
      KKY21079.1  57 AVQSARNRTTNFSTTSSAKVGAFKSVVSKKLHTSAERKANV-EQTPFKANVQAYPAP 112
                     566799999999****************************8.889999888766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.35s 00:00:00.99 Elapsed: 00:00:00.49
# Mc/sec: 3767.71
//
Query:       KKY21080.1  [L=1506]
Description: putative snf2 family helicase atpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-64  216.4   1.6    4.4e-64  216.4   1.6    2.5  3  SNF2_N       SNF2 family N-terminal domain
    7.2e-49  165.6  22.0    7.2e-49  165.6  22.0    4.4  5  DBINO        DNA-binding domain
    4.8e-20   72.0   0.0    2.8e-19   69.5   0.0    2.4  2  Helicase_C   Helicase conserved C-terminal domain
    3.4e-06   27.2   0.0    3.4e-06   27.2   0.0    2.7  2  ResIII       Type III restriction enzyme, res subunit
     0.0016   18.3   0.1     0.0059   16.4   0.0    2.1  2  DEAD         DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.041   13.0   0.0      0.041   13.0   0.0    3.4  3  HDA2-3       Class II histone deacetylase complex subunits 2 
      0.042   13.5   1.5       0.13   11.9   1.5    1.8  1  Fe_hyd_lg_C  Iron only hydrogenase large subunit, C-terminal 
       0.09   13.6   0.7       0.46   11.3   0.7    2.3  1  HNF-1A_C     Hepatocyte nuclear factor 1 (HNF-1), alpha isofo


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.6      0.93   2.1e+03     282     332 ..     396     444 ..     377     472 .. 0.59
   2 ?   -1.7   0.0      0.41   9.1e+02     278     327 ..     547     596 ..     542     607 .. 0.85
   3 !  216.4   1.6     2e-67   4.4e-64      50     349 ..     642     930 ..     627     931 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.93
                 -EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 282 pkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskek 332
                 pk+ +i  ++ls  ++++ +    +l+ k + k ++r + ++k++++  ++
  KKY21080.1 396 PKVYRIKAVSLSTRQENLRK--TAQLASKQARKWQERTNKSMKDTQARAKR 444
                 46667777777777777766..33444444444444444555544433333 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.41
                 -S---EEEEEEEEE--HHHHHHHH....................HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 278 knlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalksss 327
                 +n+ +k+++   l+++++++++ +++  + +++a++  + +++a  +s++
  KKY21080.1 547 ANVNRKVTNFEDLDFDAEDESVLQEAAMANAQNAIQEAQDKARAFNDSEN 596
                 688999******************99999999999999998876655554 PP

  == domain 3  score: 216.4 bits;  conditional E-value: 2e-67
                 HHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH.......------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxx RF
      SNF2_N  50 eakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkk.......mkkkntk 141
                  ++++  +GiLaDemGLGKTvq+++++    +  e +       ++ gp+L+++Pas+l++W++ei ++v+  ++  + ++ + +           +++
  KKY21080.1 642 NLYEQGINGILADEMGLGKTVQSISVMG---YLAEVH-------NIWGPFLVIAPASTLHNWQQEITKFVPTLKVLPYWGNAKDRkilrkfwD---RKH 727
                 678999**********************...644444.......4679*************************99777777766567654321...233 PP

                 ----------EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 142 vapklladydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqt 240
                 +  +   +++v++t+Y+ + ++a      + +++v+w++++lDE++ +k+s s+  ++++ +  +nr++ltGTPiqn++++l++Ll+f+++  f++++ 
  KKY21080.1 728 ITYTKESEFHVLVTSYQLVVQDA------QYFQKVRWQYMILDEAQAIKSSSSSRWKVLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPTLFDSHDE 820
                 455566789***********999......89******************************************************************** PP

                 HHHHTHHHHH.......HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH- CS
                 xxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 241 fdkllqrpie.......aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskek 332
                 f+++++++ie       + ++++ +rL+ +l+++mlrr+k+ v+k+l +k+e+ if++l+  +r +Y           ++ +  +++a++ +++ +++ 
  KKY21080.1 821 FSDWFSKDIEshaqsntKLNQDQLRRLHMILKPFMLRRVKAHVQKELGDKVEKDIFCDLTYRQRAYYS-----NLRSRISIMDLIEKATMGDDQ-DTAT 913
                 ****************999*************************************************.....333444445555555665555.4477 PP

                 HHHHHHHHHHHHH---X CS
                 xxxxxxxxxxxxxxxxx RF
      SNF2_N 333 ilelllelrqacnhpql 349
                 +++l+++ r++cnhp+l
  KKY21080.1 914 LMNLVMQFRKVCNHPDL 930
                 9**************98 PP

>> DBINO  DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   1.0       2.7   5.9e+03      94     112 ..     141     159 ..     130     164 .. 0.68
   2 ?   -0.6  16.2      0.69   1.5e+03       3      93 ..     180     271 ..     178     277 .. 0.87
   3 ?   -6.8   6.7         8   1.8e+04      82     100 ..     315     333 ..     302     358 .. 0.62
   4 !  165.6  22.0   3.2e-52   7.2e-49       3     133 ..     381     511 ..     379     512 .. 0.98
   5 ?   -3.5   0.1       5.4   1.2e+04      41      69 ..     824     852 ..     819     874 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.7
       DBINO  94 lekakkeeeereakRqqrk 112
                   k+  e e+ e +Rq+r+
  KKY21080.1 141 KAKRVLEFENAELNRQKRR 159
                 2334456788889999986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.69
       DBINO   3 ekrkkvwknivkkdipkvyrakaqaekkrlanakkvaklcarevrrkasksska.tkdlqlrakrlvremllfwkknekeereerkkaekea 93 
                 +++++++++ +++d+     + ++ +kk +++ ++  +++++e+++k++ ++ka + +  +   rl re   + kk++  er  ++ +  ++
  KKY21080.1 180 DRFRMIYESSAQQDVHDKEVFDEKERKKDMQRKRRREQTIRNELQKKQEAEAKAeQAEDSAERERLRREAEKHRKKIKTTERALHRGNSTQE 271
                 578999999999***9999999999********************99999999834466777789****************99998777666 PP

  == domain 3  score: -6.8 bits;  conditional E-value: 8
       DBINO  82 ereerkkaekealekakke 100
                 + +e+k++ek+++e+a + 
  KKY21080.1 315 KSKEQKQQEKDKAEAAFAA 333
                 2233444455555444444 PP

  == domain 4  score: 165.6 bits;  conditional E-value: 3.2e-52
       DBINO   3 ekrkkvwknivkkdipkvyrakaqaekkrlanakkvaklcarevrrkasksskatkdlqlrakrlvremllfwkknekeereerkkaekealekakkee 101
                 + ++++w+++++kdipkvyr+ka   ++r++n++k+a+l+++++r+++++++k++kd+q+rakr +rem++fwk+ne+eer+ r+ aek+++e ak+ e
  KKY21080.1 381 QIYEQIWRDMARKDIPKVYRIKAVSLSTRQENLRKTAQLASKQARKWQERTNKSMKDTQARAKRTMREMMSFWKRNEREERDLRRLAEKKEIEDAKRAE 479
                 5689*********************************************************************************************** PP

       DBINO 102 eereakRqqrkLnFLitQTELYshFiskklkt 133
                  erea+Rq+rkLnFLi+QTELYshFi++k+kt
  KKY21080.1 480 AEREANRQKRKLNFLISQTELYSHFIGRKIKT 511
                 ******************************98 PP

  == domain 5  score: -3.5 bits;  conditional E-value: 5.4
       DBINO  41 lcarevrrkasksskatkdlqlrakrlvr 69 
                 + ++ ++ +a++++k ++d   r   + +
  KKY21080.1 824 WFSKDIESHAQSNTKLNQDQLRRLHMILK 852
                 55555666666666665555544444433 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.6   8.1e+03      84      95 ..     963     974 ..     954     984 .. 0.83
   2 !   69.5   0.0   1.2e-22   2.8e-19       2     111 .]    1211    1323 ..    1210    1323 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.6
                 TESEEEESSSSS CS
  Helicase_C  84 kvnlVinfdlpr 95 
                 +v++Vi +dlpr
  KKY21080.1 963 SVRNVIEYDLPR 974
                 699*******96 PP

  == domain 2  score: 69.5 bits;  conditional E-value: 1.2e-22
                  HHHHHHHHH.HHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSS CS
  Helicase_C    2 kleallell.kleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlp 94  
                  kl++l ell +l++ g+++l++ + +++++   ++l + +++k+++l+g+++ ++r++++++f+ + e+  +L++t++++ Gi+++++++Vi++d +
  KKY21080.1 1211 KLAKLDELLrELKNGGHRVLLYFQMTRMIDLmEEYL-TYRNYKYCRLDGSTKLEDRRDTVHDFQtRPEIFiFLLSTRAGGLGINLTSADTVIFYDSD 1306
                  778888998899*****************8855666.5668**********************97455555************************** PP

                  SSHHHHHHHHTTSSSTT CS
  Helicase_C   95 rnvtsyiqriGRtgRag 111 
                  +n+t   q+++R++R g
  KKY21080.1 1307 WNPTIDSQAMDRAHRLG 1323
                  ***************86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   3.2       5.3   1.2e+04      96     118 ..     207     233 ..     132     276 .. 0.50
   2 !   27.2   0.0   1.5e-09   3.4e-06       3     170 ..     628     796 ..     619     797 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 5.3
                 -...........-SEEEEEHHHHHHTH CS
      ResIII  96 a....kekdstnkkilvttiqsldads 118
                 +    k++++++++  + + q++ a+ 
  KKY21080.1 207 KdmqrKRRREQTIRNELQKKQEAEAKA 233
                 111122333333333333333333333 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 1.5e-09
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG...............GEEEE CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee.kflflvprkslleqtleefkkflseayke...........igkkv 89 
                 +l+eyQ + ++ l++ +  ++  +g+++ + G GKT+ +++++ +l++ +++   fl+++p  +l   +++e++kf ++ +                  
  KKY21080.1 628 QLKEYQLKGLNWLVNLY--EQGINGILADEMGLGKTVQSISVMGYLAEVHNIWgPFLVIAPASTLH-NWQQEITKFVPTLKVLpywgnakdrkiL---- 719
                 67888888888887766..6999*************************8877789******99885.6999999999987533655555444422.... PP

                 SSS-B--...............-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T..TTHHHHHT---SEEEEEESS-S CS
      ResIII  90 sgdkkka........kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk..swreilekfkeavllglTATpe 170
                       +        +  ++++ ++lvt++q + +d        + +++ r +++i DEa  +++++   w+ +l  f    +l lT+Tp 
  KKY21080.1 720 ------RkfwdrkhiTYTKESEFHVLVTSYQLVVQDA-------QYFQKVRWQYMILDEAQAIKSSSssRWK-VLLGFHCRNRLLLTGTPI 796
                 ......1333333444688999999999999999999.......88999999********999997432444.677788899999999995 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.6e-06    0.0059      13     141 ..     646     777 ..     630     803 .. 0.77
   2 ?   -3.6   0.1       3.7   8.2e+03     127     154 ..     815     840 ..     813     849 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.6e-06
                 TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  13 gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtpgrlddl 111
                 +g + ++a e G GKT   +i v+  ++e  ++     l+++P   L + + ++++kf  +  l+vl   g+ + r+ l+k+  + +i+++  + ++ l
  KKY21080.1 646 QGINGILADEMGLGKTVQ-SISVMGYLAE-VHNIWGPFLVIAPASTLHNWQ-QEITKFVPT--LKVLPYWGNAKDRKILRKFWDRKHITYTKESEFHVL 739
                 55677889999*****87.8888888887.56666689********97655.667777775..899999999999*******99999999999999999 PP

                 H........HCTSSHCTTE..EEEEEETHHHHHHTTTHHH CS
                 x........xxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
        DEAD 112 l........stgklnlsqv..rflVlDEadrlldqgfsdf 141
                 +        + ++  +++v  ++++lDEa+ + +++ s++
  KKY21080.1 740 VtsyqlvvqDAQY--FQKVrwQYMILDEAQAIKSSSSSRW 777
                 9766665533444..77773367*********99966554 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.7
                 EETHHHHHHTTTHHHHHHHHHHSHHHCT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 127 lDEadrlldqgfsdfinrilnqlpqitc 154
                 +D  d+++d+ fs++i++ ++q +++ +
  KKY21080.1 815 FDSHDEFSDW-FSKDIES-HAQSNTKLN 840
                 6778999999.9999999.555543333 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   4.4       1.4   3.1e+03     134     201 ..     207     278 ..     194     279 .. 0.73
   2 ?   -0.3   0.0      0.21   4.6e+02      47      67 ..     897     930 ..     861     931 .. 0.57
   3 ?   13.0   0.0   1.8e-05     0.041      86     240 ..    1205    1340 ..    1197    1359 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.4
                 SSSEEEESSS--S--S---S-......................-SEEEEEEESS---TTTS--TT-S-EEEE CS
      HDA2-3 134 kklkikrysgeklydekkkkskdtkkns....rktkeklkkkihsltihllsttrqltkdksllenikfdli 201
                 k+++ kr +++++ +e +kk++++ k +    ++++e+l++++ +  +++ +t+r l + +s++e +++ +i
  KKY21080.1 207 KDMQRKRRREQTIRNELQKKQEAEAKAEqaedSAERERLRREAEKHRKKIKTTERALHRGNSTQEISEVTAI 278
                 577888999999998888888555554433326666666777777778888888888888888887777665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.21
                 ...............HHHHHHHH.HHHHHHH-GGG CS
      HDA2-3  47 s..............ikslticlenlslvanHPsL 67 
                 +              ++++++++ + + v nHP+L
  KKY21080.1 897 MdliekatmgddqdtATLMNLVM-QFRKVCNHPDL 930
                 22223333334444377888888.9********99 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 1.8e-05
                  HHHT-HHHHHHHHHHHHHTTSS....EEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-..................-SEEEEEEES CS
      HDA2-3   86 laetSgKFkvlndlvnliierkrksslnvlvvakskkeldLiEalllGkklkikrysgeklydekkkkskdtkknsrktkeklkkkihsltihllst 182 
                   ++ SgK+++l +l+  + +        vl+  +  + +dL E +l  ++ k+ r++g + +++ +++               + +     +++l +
  KKY21080.1 1205 FVTDSGKLAKLDELLRELKNGG----HRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTV-------------HDFQTRPEIFIFLLS 1284
                  5678**************9999....99*******************************9999999988.............223334455555655 PP

                  S---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---.-------EEEEEETTSHH CS
      HDA2-3  183 trqltkdksllenikfdliiafDssvdtsspsveslrtqn.rkknklpiirlvpinSie 240 
                  tr         + + +d +i  Ds+ +++ +s  + r ++  + +++ ++r+++  +ie
  KKY21080.1 1285 TRAGGLG---INLTSADTVIFYDSDWNPTIDSQAMDRAHRlGQTKQVTVYRMITRGTIE 1340
                  5555333...4445567777777777777777776666652233347777777777666 PP

>> Fe_hyd_lg_C  Iron only hydrogenase large subunit, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.5   5.9e-05      0.13     129     223 ..     475     587 ..     474     599 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.9e-05
                  SHHHHHTSTT-BBTBBSS-EEEEHHHHHHHHHHTT--GGGS-------TTSSSSSTSS-..................TTEEEEE.EEE-TSEEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxx.xxxxxxxxxxxxx RF
  Fe_hyd_lg_C 129 aKklEaareefksagrdvDavlTtrElaellkeagidlakleeeeldnplgessgagki..................egvkeae.velegktlkvavv 207
                  aK++Ea+re  ++ +r++++ ++ +El + +  ++i+ +++e ++ d  ++ s+++ +                   ++v++ e ++++ ++ +v + 
   KKY21080.1 475 AKRAEAEREANRQ-KRKLNFLISQTELYSHFIGRKIKTDEVERATNDPDVAASNEKVQPgdpnahtvnlpdsvanvnRKVTNFEdLDFDAEDESVLQE 571
                  89********876.5***************************99977765555554444899999999999998888555555555555555567777 PP

                  ESHHHHHHHHHHHHTT CS
                  xxxxxxxxxxxxxxxx RF
  Fe_hyd_lg_C 208 nGlknikklleklkag 223
                    ++n+++ +++++++
   KKY21080.1 572 AAMANAQNAIQEAQDK 587
                  7778888887777665 PP

>> HNF-1A_C  Hepatocyte nuclear factor 1 (HNF-1), alpha isoform C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.7    0.0002      0.46       9      47 ..      39      77 ..      19      85 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
    HNF-1A_C  9 qsdsglhtpvsqadslhlqpqdpagaqhlqsshrltass 47
                +s s+++  v + d ++++ q+pa+++++q+++r+t ++
  KKY21080.1 39 SSLSPVKSDVQPEDKMQVDMQSPAPIEEKQPTPRVTPAP 77
                5669******************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2347  (0.130905); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.42u 0.34s 00:00:01.76 Elapsed: 00:00:00.57
# Mc/sec: 7897.03
//
Query:       KKY21081.1  [L=596]
Description: putative sodium hydrogen exchanger [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-52  176.4  31.0      1e-51  176.0  31.0    1.1  1  Na_H_Exchanger  Sodium/hydrogen exchanger family


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.0  31.0   5.7e-56     1e-51      50     380 ..      37     393 ..      29     394 .. 0.90

  Alignments for each domain:
  == domain 1  score: 176.0 bits;  conditional E-value: 5.7e-56
                     CCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHHHHHHHHH.H.....HTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCC CS
  Na_H_Exchanger  50 vlselglilllFlaGleldlrelrknlksilllallgvlitvvliGlllyll.....lilgiplleallfgailsatdpvvvlailkeegrvper 139
                     ++s + l++l+ l+ + l  +++++ +k   +  ++  +++vvl G++lyl+      +l+i+++ea+ +ga lsatdpv++lai+ ++ +v+ +
      KKY21081.1  37 IFSSWALFILITLLIIALFTSYILQQKKIQAVHETVISIFAVVL-GVILYLWtriplDGLDISFVEAISVGATLSATDPVTILAIF-NLYKVEPK 129
                     56666666666666666666788888888899999999999999.*****99****9778**************************.******** PP

                     CCCCHHHHHHHHHHHCCCCCHHHHHHTX...XXXXTSSSTSXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS..CTHHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger 140 lgtlllgesvlnDavavvllavllalak...eeaggetslllllliflvvavgglllglvigwllrlitrft..dddrelevllvlllallaall 229
                     l+t+++ges+lnDa+a+vl+  +  + +    +  + +sl+ +++ifl+v++g+l++g+++g  ++l +++t  ++ +++e +l++l+a++++++
      KKY21081.1 130 LYTVIFGESILNDAIAIVLFETATRYRSgeaAGSLTFISLFEAIGIFLLVFFGSLVIGVLVGIGTALCLKYTyvRRFPKIESCLIVLVAYASYFF 224
                     **************************998655555667888****************************************************** PP

                     HHTSXXXHHHHHHHHHHHHH.....HHHHHTTHHHHHHHHHH...HHHHHHHHHHHHHHSXHHHHHXXHHHHHHHHHHHHHHHTHHHHHHHHHTT CS
  Na_H_Exchanger 230 aellgvsgilgaflaGlvls.....eyefsnklseklesfre...glfnplfFvlvGlsldlkvlnnhlsvlilvllilvaillgrilavflllr 316
                     +  +++sgi+  +++G++l+     + +++++l+  ++++++   +l ++++F+++Gl+l+ +     ++ ++++l++++ i ++r+lavf+l++
      KKY21081.1 225 SNGIHMSGIVSLLFCGITLKhwayyNMSRRTQLT--TKYLFQvlaQLSENFIFIYLGLTLFTETDL--EFKPLFILVTVIGICAARYLAVFPLSK 315
                     ********************77644334444444..445555555****************66654..9************************** PP

                     TX.................SSXHHHHHHCCCCSS.BHHHHHHHHHHHHHHXHHHHTTSSTTTCSTSXHHHHHHHHHHHHHH CS
  Na_H_Exchanger 317 ll.................glslrealiigfgglqrgavalalaalgpalgllarelyallivvvlftvlvqGlslkpllk 380
                     ++                  l++  +++++++gl rgav +alaa ++    +  +l a+++vvv++tv+++G++++ +l+
      KKY21081.1 316 AInwviryrarrlgrdvaeELPFPYQAMLFWAGL-RGAVGVALAAGLEGN--NGPALRATVLVVVVLTVIIFGGTTARMLE 393
                     ******************99**************.**************9..88889********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1014  (0.0565564); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.52
# Mc/sec: 3432.95
//
Query:       KKY21082.1  [L=257]
Description: putative phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-32  112.0   0.0    3.8e-32  111.6   0.0    1.1  1  His_biosynth  Histidine biosynthesis protein


Domain annotation for each model (and alignments):
>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   0.0   2.1e-36   3.8e-32       4     223 ..       6     236 ..       4     242 .. 0.87

  Alignments for each domain:
  == domain 1  score: 111.6 bits;  conditional E-value: 2.1e-36
                   EEEEEETTEEEEECTTCS.......TCEEEETTSHHH.HHHHHHHHT-SEEEEEEHHHHCTTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHH CS
  His_biosynth   4 palDlkdGkvVrlvkGdr.......fqelryagdpve.lakryeeegadelhvvDldaakegreanldlveeiaeevfipvqvGGGIrsledveell 92 
                   p++Dl+ G+v ++v G+        +++++ ++ p++ +   y+++++   hv++l     +++a ++++e++  +    +q+GGG+++ + +++++
    KKY21082.1   6 PCIDLHAGHVKQIVGGTLsnvsknlKTNYVSEH-PASfYSDLYRQNDLLGAHVIML--GPGNEDAAKQAIEAWPGR----LQLGGGVSDTN-AQKWI 94 
                   9***************99777665444444444.444377889*************..677999999999999999....**********9.***** PP

                   HCT-SEEEESHHHHH-....THHHHHHHHHHC..GGGEEEEEEEEE.C..EEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS---H CS
  His_biosynth  93 eagadkviigtaavkn....pelikelaekfg..sqkivvaiDarr.g..ykvaikgwreetgldavelakkleelgageilltdidrdGtlsGpdl 180
                   +aga+kvii++  + n     e +++++ + g  ++k+v+ + +rr g  + va+++w+  t++++ +    + e  ++e+l++  d++G + G+d 
    KKY21082.1  95 DAGAEKVIITSFLFPNgvlsRERLESVLANLGhdKDKLVIDLSCRRqGdkWYVAMNKWQTITDMEVNQESISMLEPYCSEFLIHAADNEGLQRGMDE 191
                   ***********96655111156667777776622679*********6378*********************************************** PP

                   HHHHHHHHHHSSEEEEESS--SHHHHHHHH..HTTCSEEEESHHH CS
  His_biosynth 181 eltkelaeavkipviasGGvgsledlkelk..segvdavivgsal 223
                   el+ +la++++ipv+++GG ++ledl+ ++  s g+ ++ +gsal
    KKY21082.1 192 ELITRLAQWCTIPVTYAGGGRTLEDLDLVRdlSFGKVDLTIGSAL 236
                   *****************************9888899999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 1620.97
//
Query:       KKY21083.1  [L=277]
Description: hypothetical protein UCRPC4_g03878 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-13   50.3   4.7    5.8e-13   49.3   4.7    1.5  1  DUF4602   Domain of unknown function (DUF4602)


Domain annotation for each model (and alignments):
>> DUF4602  Domain of unknown function (DUF4602)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   4.7   3.2e-17   5.8e-13      13     129 ..     112     233 ..      81     238 .. 0.85

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 3.2e-17
     DUF4602  13 kskrakrslsskkksrkkkkaeeeeeenlrqefdLkkarkevhrfgisgls...kkerkkaekerlikLGAKpp..knpyinykelkgekkkakareee 106
                 + +++++++ s++k++k++ ++++++ nl+++++L++++ke+h++ +   s   + +r++a++ rl++LG K     + +++++++ g+  ka a+e++
  KKY21083.1 112 TLDEERIPKPSSSKKQKDPGEDTNDAVNLKNDLALQRLLKESHLLESAKVSapaGLQRHQANDLRLEALGSKGSilAQTKMPMSHRRGMNAKASATEAK 210
                 4455556666667999999999*****************************6666*****************99889999******************* PP

     DUF4602 107 ekaeareagvvtkkkkkkkkkkk 129
                 ++ ea+e+g++ ++    +k k 
  KKY21083.1 211 RRVEAKENGIILERSLHTSKTKA 233
                 **********9988766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1758.80
//
Query:       KKY21084.1  [L=588]
Description: putative transcription factor stea [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-56  189.4   0.1    2.7e-56  188.7   0.1    1.3  1  STE       STE like transcription factor


Domain annotation for each model (and alignments):
>> STE  STE like transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.7   0.1   1.5e-60   2.7e-56       1     110 []      57     165 ..      57     165 .. 0.99

  Alignments for each domain:
  == domain 1  score: 188.7 bits;  conditional E-value: 1.5e-60
         STE   1 qvirrykleeeegfiscvlwknlfyitgtdivkilvykleafGrkitdkkkfeeGifsdlrnlkigvdavleepksefldllyknkclrtqkkqkvfyw 99 
                 q irr+ l++ e ++scvlw+nlf+i+gtdiv++l+++++afGr ++++kkfeeGifsdlrnlk g+da+leepks+fld+lykn+c+rtqkkqkvfyw
  KKY21084.1  57 QFIRRFLLPTGE-YVSCVLWNNLFHISGTDIVRCLAFRFQAFGRPVKNSKKFEEGIFSDLRNLKSGTDASLEEPKSPFLDFLYKNNCIRTQKKQKVFYW 154
                 679********9.************************************************************************************** PP

         STE 100 fsvphdklfld 110
                 +svphd+lfld
  KKY21084.1 155 YSVPHDRLFLD 165
                 *********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 4040.20
//
Query:       KKY21085.1  [L=634]
Description: putative secreted [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-19   67.5   3.5    8.5e-19   67.5   3.5    3.2  3  DUF2423   Protein of unknown function (DUF2423)
  ------ inclusion threshold ------
      0.037   14.1   0.0      0.037   14.1   0.0    2.8  2  Mit_KHE1  Mitochondrial K+-H+ exchange-related


Domain annotation for each model (and alignments):
>> DUF2423  Protein of unknown function (DUF2423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   1.0      0.49   4.4e+03       2      13 ..     351     362 ..     351     364 .. 0.86
   2 !   67.5   3.5   9.5e-23   8.5e-19       1      42 [.     503     544 ..     503     546 .. 0.97
   3 ?   -6.3   9.6         2   1.8e+04       4      19 ..     592     607 ..     590     614 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.49
     DUF2423   2 AKSlRSkskkra 13 
                 AK +RS +k+ +
  KKY21085.1 351 AKTARSVTKRLN 362
                 8999**999976 PP

  == domain 2  score: 67.5 bits;  conditional E-value: 9.5e-23
     DUF2423   1 MAKSlRSkskkraravkRksvFgpvedaRteRLsaKLkelak 42 
                 MAKS+RS+++kr++a++R++vFgp+ daRteRLsaKL+ela+
  KKY21085.1 503 MAKSSRSSVRKRNNAKLRSTVFGPAADARTERLSAKLQELAA 544
                 ***************************************996 PP

  == domain 3  score: -6.3 bits;  conditional E-value: 2
     DUF2423   4 SlRSkskkraravkRk 19 
                 S  Sk kk+ ++ k+k
  KKY21085.1 592 STSSKKKKASKNDKKK 607
                 6679**********98 PP

>> Mit_KHE1  Mitochondrial K+-H+ exchange-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.1e-06     0.037      13     154 ..     172     322 ..     165     327 .. 0.69
   2 ?  -10.7  12.8         2   1.8e+04      40      74 ..     471     511 ..     444     623 .. 0.52

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.1e-06
    Mit_KHE1  13 liYcekseeilskssaskaeskekledkltnkaaktwaklekae..egwkkkivelgeklldripyeEl.aLksipsksak.....elesekekkkkek 103
                 liY+   + + + ++ +k+ + +k+++k ++ +  +++   ++   +g+k k ++ ++k+++ +  + l +L  ++ + ++     ++ ++  +k +++
  KKY21085.1 172 LIYTPPPPPLSKPAEGEKEGKLHKVQRKWQEEVRGAKTTTAQTAswQGLKSKATRGINKAMEYTTTSNLdFLGRVNDNGSSdstkdRQGDDGVQKGEKT 270
                 556655554444444445555667777777776666655544442256899999999998887776664378888843333444443333345556677 PP

    Mit_KHE1 104 eelksiellyPssl.lseekvleelrklaeereelhkkrlilcllgiPltlp 154
                    +++ l+yP+++ +se++++ee+ + + + ++  ++ +i+ + ++P+   
  KKY21085.1 271 VGVEQMVLIYPPAMnMSERQMREEFVNTMLRTKSKAQRDAIIATGLMPVAYG 322
                 8889999****99999*************9999***************9865 PP

  == domain 2  score: -10.7 bits;  conditional E-value: 2
    Mit_KHE1  40 kltnkaaktwakl....ekaeeg..wkkkivelgeklldri 74 
                  + +k a+ w+k+    ek++++   ++k++++ ++  + +
  KKY21085.1 471 TVMKKGAREWKKWcgvfEKEPQKalTNQKVKKMAKSSRSSV 511
                 44445555555543333444444455555555554444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1597  (0.0890736); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 4030.30
//
Query:       KKY21086.1  [L=487]
Description: putative miz zinc finger protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-28   97.4   0.0    1.6e-27   96.7   0.0    1.4  1  PINIT           PINIT domain
      1e-22   79.6   4.5    1.9e-22   78.7   4.5    1.5  1  zf-MIZ          MIZ/SP-RING zinc finger
    5.8e-08   32.3   0.2    1.4e-07   31.1   0.2    1.6  1  SAP             SAP domain
    5.6e-07   29.3   1.1    1.3e-06   28.1   1.1    1.6  1  zf-Nse          Zinc-finger of the MIZ type in Nse subunit
  ------ inclusion threshold ------
      0.011   15.8   0.1      0.031   14.3   0.1    1.7  1  zf-Sec23_Sec24  Sec23/Sec24 zinc finger
       0.16   12.3   1.8       0.33   11.2   1.8    1.5  1  PTPRCAP         Protein tyrosine phosphatase receptor type C-
       0.17   11.1   1.2       0.29   10.4   1.2    1.4  1  NOA36           NOA36 protein
       0.23   11.7   2.4       0.45   10.7   2.4    1.6  1  zf-C3HC4_4      zinc finger of C3HC4-type, RING
        1.5    8.7   4.5          3    7.7   4.5    1.6  1  zf-C3HC4_2      Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> PINIT  PINIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.0   7.9e-31   1.6e-27      73     146 .]     121     194 ..      53     194 .. 0.81

  Alignments for each domain:
  == domain 1  score: 96.7 bits;  conditional E-value: 7.9e-31
       PINIT  73 sseeqdiefPpqleikvNgkevkanlrglknkpGtarPvditkllrlspaetNrieityaltkkkYylvvylVk 146
                   ++ di+fP+q+e+++N +evkanlrglknkpG++rP+dit++lr++p+++N+++ityalt+kkYy+v++lVk
  KKY21086.1 121 PYTSSDIAFPHQCELSCNLDEVKANLRGLKNKPGSTRPADITSYLRKKPGYSNKLSITYALTTKKYYIVINLVK 194
                 345789*******************************************************************8 PP

>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   4.5   9.5e-26   1.9e-22       1      49 [.     236     284 ..     236     285 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 9.5e-26
                 EESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT-- CS
      zf-MIZ   1 vslkCplslsrikiPvrgekCkHlqCfdlesylelnertetWnCPvCsk 49 
                 +slkCpls+ r+ +P+r+++C+H+qCfd+ s+l+l+e+++tW CP+C+k
  KKY21086.1 236 MSLKCPLSTLRLDVPTRSMHCTHNQCFDAASFLQLQEQAPTWTCPICNK 284
                 79*********************************************98 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.2     7e-11   1.4e-07       7      32 ..      24      49 ..      18      50 .. 0.93

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 7e-11
                HHHHHHHHHTT--TTS-HHHHHHHHH CS
         SAP  7 aeLKeeLkkrGLptsGkKaeLieRLk 32
                a LK++L++ GLp+sG K+eL+ RL+
  KKY21086.1 24 AHLKDILRQEGLPVSGIKQELVNRLQ 49
                67***********************8 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   1.1   6.4e-10   1.3e-06       2      57 .]     228     283 ..     227     283 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 6.4e-10
                 XXXXXSSBXXSB-TTTSSB-SSEEEESSS--..EEEHHHHHHHCTTTS-EE-SCCC-S CS
      zf-Nse   2 elaieeerislkCPltlqpfeePvtskkCpH..vFEreaIlelikrkktvkCPvagCs 57 
                 +++  ++ +slkCPl+   +  P +s +C H   F+  + l+l ++ +t  CP+  C+
  KKY21086.1 228 DIVAMSSVMSLKCPLSTLRLDVPTRSMHCTHnqCFDAASFLQLQEQAPTWTCPI--CN 283
                 67778899***********************666********************..86 PP

>> zf-Sec23_Sec24  Sec23/Sec24 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   1.5e-05     0.031      14      34 ..     267     287 ..     265     290 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
  zf-Sec23_Sec24  14 fckidfggkrwiCnfCnhkne 34 
                     f + ++++ +w+C++Cn++++
      KKY21086.1 267 FLQLQEQAPTWTCPICNKSTP 287
                     7899999**********9986 PP

>> PTPRCAP  Protein tyrosine phosphatase receptor type C-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.8   0.00017      0.33      25      88 ..     311     376 ..     301     409 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00017
     PTPRCAP  25 lwasppgrWlrara...edgeedeeeEdqedeedeeedsedleggeeeaesqeeeqaeseeageeqa 88 
                 +  +p grW +       d++     E++ed++d ++d +++++ + ++ +qe + ++++ ++++  
  KKY21086.1 311 VTVEPDGRWTKNAGpetPDNSRPSASEEEEDDDDDDDDIVEIQDVRVSSIKQE-STPTTSTPTHQTP 376
                 567899***99865423345555567888888888888777777777666544.4444554444433 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.2   0.00015      0.29     204     280 ..     270     348 ..     213     369 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00015
       NOA36 204 kyeknkaipcpkcgyet...qetkdlslstrslkfgrqkqadgsddddddeedsdydaylkalasgddeddegdeddddd 280
                  +e++ +  cp c+  t   + t d+ +    ++ gr+ ++ + + d   +++++ ++  ++  s+++e+++ d+ddddd
  KKY21086.1 270 LQEQAPTWTCPICNKSTpydSLTMDMYVDDILKSTGRNVEQVTVEPDGRWTKNAGPETPDNSRPSASEEEED-DDDDDDD 348
                 3566667789*9999984445688888888889999999888888888888888888877776665433333.3333333 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.4   0.00023      0.45       8      42 .]     247     282 ..     240     282 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00023
  zf-C3HC4_4   8 LekPv.sleCGhsfClsCisslqkepdgeqllCplC 42 
                 L  P+ s+ C h+ C+   s lq ++++  ++Cp C
  KKY21086.1 247 LDVPTrSMHCTHNQCFDAASFLQLQEQAPTWTCPIC 282
                 555654899*************************** PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.5    0.0015         3       1      40 []     239     282 ..     239     282 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0015
  zf-C3HC4_2   1 kCpiCldmlkdpsvvtpCgHvfCqkCilr.sLeekn...eCPlC 40 
                 kCp+   +l  p+++  C H  C +      L+e+     CP+C
  KKY21086.1 239 KCPLSTLRLDVPTRSMHCTHNQCFDAASFlQLQEQAptwTCPIC 282
                 6999999****************987544345555446789999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1046  (0.0583412); expected 358.6 (0.02)
Passed bias filter:                      665  (0.0370907); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.48
# Mc/sec: 3024.81
//
Query:       KKY21087.1  [L=591]
Description: putative transcriptional repressor tup1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-60  199.1   7.8    9.2e-09   35.8   0.1    7.4  7  WD40          WD domain, G-beta repeat
    2.6e-18   66.1   9.9    4.7e-18   65.3   9.9    1.4  1  Tup_N         Tup N-terminal
    9.7e-16   57.9   0.0    0.00048   20.4   0.0    6.2  6  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    1.7e-06   27.6   0.0      0.016   14.6   0.0    4.4  5  WD40_like     WD40-like domain
    9.8e-06   24.7   0.0       0.41    9.6   0.0    4.2  5  Ge1_WD40      WD40 region of Ge1, enhancer of mRNA-decapping 
     0.0023   16.5   0.4       0.19   10.2   0.1    2.5  2  Cytochrom_D1  Cytochrome D1 heme domain
     0.0047   16.8   0.0         20    5.3   0.0    3.8  3  PD40          WD40-like Beta Propeller Repeat
     0.0061   15.3   0.1        4.3    5.9   0.0    3.1  3  Nup160        Nucleoporin Nup120/160
     0.0064   15.9   0.0        3.2    7.0   0.0    2.6  3  Nbas_N        Neuroblastoma-amplified sequence, N terminal


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   5.7e-07    0.0011       3      38 .]     280     314 ..     278     314 .. 0.84
   2 !   29.0   0.0   6.7e-10   1.3e-06      13      38 .]     337     362 ..     329     362 .. 0.93
   3 !   35.5   0.1   5.8e-12   1.2e-08       5      38 .]     370     404 ..     366     404 .. 0.93
   4 !   28.2   0.0   1.1e-09   2.3e-06      11      38 .]     418     445 ..     408     445 .. 0.86
   5 !   26.6   0.0   3.8e-09   7.6e-06       8      37 ..     459     489 ..     453     490 .. 0.92
   6 !   35.8   0.1   4.6e-12   9.2e-09       1      38 []     506     544 ..     506     544 .. 0.95
   7 !   22.0   0.0   1.1e-07   0.00021       4      38 .]     551     586 ..     548     586 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 5.7e-07
                 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 ++++lt H s v++++fs+dg+++a+G+ +++  i+d
  KKY21087.1 280 LVQSLT-HESvVCCVRFSQDGKYIATGC-NRSAQIFD 314
                 567775.95647****************.99998887 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 6.7e-10
                 EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriWd 38 
                 ++s++fspdg++la+G +D+ +r+Wd
  KKY21087.1 337 IRSVCFSPDGRYLATGAEDKLIRVWD 362
                 89***********************9 PP

  == domain 3  score: 35.5 bits;  conditional E-value: 5.8e-12
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  t++GH ++++sl+f ++g+ +asGs D+tvr+Wd
  KKY21087.1 370 NTFSGHeQDIYSLDFAKNGRHIASGSGDKTVRLWD 404
                 689***999****************99*******9 PP

  == domain 4  score: 28.2 bits;  conditional E-value: 1.1e-09
                 SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++vt +a spdg+++a+Gs D++vr+Wd
  KKY21087.1 418 DGVTTVALSPDGRYVAAGSLDRSVRVWD 445
                 469************************9 PP

  == domain 5  score: 26.6 bits;  conditional E-value: 3.8e-09
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +GH +sv+s+af p+g+ l+sGs D+t+++W
  KKY21087.1 459 EGHqDSVYSVAFAPNGRDLVSGSLDKTIKMW 489
                 6**888************************* PP

  == domain 6  score: 35.8 bits;  conditional E-value: 4.6e-12
                 TEEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 g+c+rt++GH++ v s++  p+g w++sGs+D+ v +Wd
  KKY21087.1 506 GKCVRTFEGHKDyVLSVCLTPNGEWVMSGSKDRGVQFWD 544
                 79********666*************************9 PP

  == domain 7  score: 22.0 bits;  conditional E-value: 1.1e-07
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +  l GH +sv s+a +p ga++a+Gs D + riW+
  KKY21087.1 551 QMMLQGHkNSVISVAPCPTGALFATGSGDMKARIWS 586
                 66799**99999**************99*******5 PP

>> Tup_N  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   9.9   2.3e-21   4.7e-18       1      76 [.      15      83 ..      15      84 .. 0.96

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 2.3e-21
       Tup_N  1 RlnelLdavkqEfdalsqeasslkaqkdeyelkiqsqiqElqqirqtlyeLeeahrkikqqYEeeiarLkaeLesr 76
                Rl+elL++vkqEfd+ s+          +ye+++++q++E++qir ++++Le+a+ kikq+YE+ei+ L++eLe+r
  KKY21087.1 15 RLTELLEQVKQEFDSQSR-------AAGDYEHQVNNQVNEMDQIRAKIFQLEQAQIKIKQEYENEIRILRHELEQR 83
                9*************9988.......5689*********************************************98 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0024       4.8      34      72 ..     283     320 ..     266     329 .. 0.81
   2 !   20.4   0.0   2.4e-07   0.00048      34      85 ..     330     380 ..     324     383 .. 0.89
   3 !   13.6   0.0   3.1e-05     0.061      37      84 ..     375     420 ..     371     424 .. 0.88
   4 !    6.4   0.0    0.0054        11      40      76 ..     419     455 ..     415     460 .. 0.90
   5 ?    3.7   0.0     0.038        76      35      65 ..     459     489 ..     455     493 .. 0.88
   6 ?    1.7   0.0      0.16   3.2e+02      36      82 ..     514     560 ..     505     585 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0024
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkv 72 
                  + +++s v ++++++dgk +a +++  + +++d+++g+ 
   KKY21087.1 283 SLTHESVVCCVRFSQDGKYIATGCNR-SAQIFDVNTGER 320
                  446788899***************76.5799***99985 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 2.4e-07
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                  +++ d  +rs++++pdg+ La + +d  +r+ d+ + k+ +++s ++++ + 
   KKY21087.1 330 DKEGDLYIRSVCFSPDGRYLATGAEDKLIRVWDIATRKIRNTFSGHEQD-IY 380
                  5678999************************************988874.55 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 3.1e-05
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekav 84 
                  +++ + sL + ++g+ +a +  d +vrl d+  g+ v  ls+++   v
   KKY21087.1 375 HEQDIYSLDFAKNGRHIASGSGDKTVRLWDIDAGQQVLVLSIEDG--V 420
                  678999*****************************9999988876..5 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0054
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                   v+ +a +pdg+  a +  d +vr+ d  sg +++ l
   KKY21087.1 419 GVTTVALSPDGRYVAAGSLDRSVRVWDTTSGYLLERL 455
                  58999**************************998876 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.038
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrll 65 
                  ++++ +v s+a+ p+g+ L+ +  d ++++ 
   KKY21087.1 459 EGHQDSVYSVAFAPNGRDLVSGSLDKTIKMW 489
                  568899*******************999986 PP

  == domain 6  score: 1.7 bits;  conditional E-value: 0.16
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek 82 
                  +++  v s++  p+g+  + + +d  v++ d  +g+    l+ ++++
   KKY21087.1 514 GHKDYVLSVCLTPNGEWVMSGSKDRGVQFWDPITGDAQMMLQGHKNS 560
                  567789999999************99999999998887777777665 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.18   3.6e+02       5      35 ..     292     321 ..     288     329 .. 0.82
   2 ?   -0.3   0.0      0.27   5.3e+02       4      34 ..     338     368 ..     335     376 .. 0.85
   3 !   14.6   0.0   7.9e-06     0.016       2      38 ..     378     414 ..     377     423 .. 0.87
   4 !    5.4   0.0    0.0048       9.6       4      67 ..     421     488 ..     418     495 .. 0.80
   5 ?   -0.6   0.0      0.34   6.7e+02       5      47 ..     521     563 ..     518     566 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.18
   WD40_like   5 sidiskkgslilyGgkddkctvlkleslesv 35 
                  + +s++g++i+ G ++  +++++++++e  
  KKY21087.1 292 CVRFSQDGKYIATGCNR-SAQIFDVNTGERA 321
                 57899********9987.5799999998765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.27
   WD40_like   4 YsidiskkgslilyGgkddkctvlklesles 34 
                  s+ +s++g +++ G++d+ ++v ++ + ++
  KKY21087.1 338 RSVCFSPDGRYLATGAEDKLIRVWDIATRKI 368
                 58889*******************9998765 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 7.9e-06
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlkleslesvsiv 38 
                 +iYs+d+ k+g  i+ G+ d+++++ +++ +++v ++
  KKY21087.1 378 DIYSLDFAKNGRHIASGSGDKTVRLWDIDAGQQVLVL 414
                 7*****************************9998654 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.0048
   WD40_like   4 YsidiskkgslilyGgkddkctvlkleslesvsiv...esfedSvifvkllddd.lilvvtlDGtill 67 
                  ++ +s++g +++ G+ d  ++v ++ s+ +   +   e+ +dSv  v +  +   ++ ++lD ti +
  KKY21087.1 421 TTVALSPDGRYVAAGSLDRSVRVWDTTSGYLLERLegpEGHQDSVYSVAFAPNGrDLVSGSLDKTIKM 488
                 57899***********************98887762225799***99999998834555789988865 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 0.34
   WD40_like   5 sidiskkgslilyGgkddkctvlkleslesvsivesfedSvif 47 
                 s+ + ++g+ ++ G+kd  ++  +  +++   ++++ ++Svi 
  KKY21087.1 521 SVCLTPNGEWVMSGSKDRGVQFWDPITGDAQMMLQGHKNSVIS 563
                 777899**********************************996 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.033        65     184     208 ..     284     308 ..     274     322 .. 0.80
   2 !    9.6   0.0    0.0002      0.41     188     220 ..     335     367 ..     308     378 .. 0.76
   3 !    7.0   0.0    0.0012       2.5     180     215 ..     410     445 ..     373     450 .. 0.80
   4 ?   -0.8   0.0      0.29   5.8e+02     189     216 ..     464     491 ..     459     525 .. 0.82
   5 ?   -3.6   0.0       2.1   4.3e+03     187     214 ..     515     543 ..     504     547 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.033
    Ge1_WD40 184 ieehsliveaafspdGtalatased 208
                 ++++s + +  fs dG  +at ++ 
  KKY21087.1 284 LTHESVVCCVRFSQDGKYIATGCNR 308
                 567789999*************975 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0002
    Ge1_WD40 188 sliveaafspdGtalatasedGevkffqvyled 220
                   i +  fspdG  lat +ed +++ + +   +
  KKY21087.1 335 LYIRSVCFSPDGRYLATGAEDKLIRVWDIATRK 367
                 3488999********************998765 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0012
    Ge1_WD40 180 gllkieehsliveaafspdGtalatasedGevkffq 215
                  +l ++ +  +++ a+spdG  +a+ s d  v+ + 
  KKY21087.1 410 QVLVLSIEDGVTTVALSPDGRYVAAGSLDRSVRVWD 445
                 45556666679999*******************996 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.29
    Ge1_WD40 189 liveaafspdGtalatasedGevkffqv 216
                  + + af+p+G  l   s d ++k++ +
  KKY21087.1 464 SVYSVAFAPNGRDLVSGSLDKTIKMWEL 491
                 678899******************9976 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 2.1
    Ge1_WD40 187 hs.liveaafspdGtalatasedGevkff 214
                 h   + +  ++p+G  +   s+d  v+f+
  KKY21087.1 515 HKdYVLSVCLTPNGEWVMSGSKDRGVQFW 543
                 54367788999999999999999999999 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1   9.4e-05      0.19      29      94 ..     327     394 ..     307     395 .. 0.78
   2 !    8.5   0.3   0.00033      0.65      18      95 ..     359     436 ..     355     448 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9.4e-05
                   EEEE-STTEEE.EEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE-SS..EEEEEEE--TTSEEEEE CS
  Cytochrom_D1  29 avletgyalHi.srvfasdgRyvyvigRDgkvtliDLwakeivaevkiGl..narsvavSqddryvivg 94 
                   ++++ +++l i s+ f++dgRy+ + + D  + + D+ +++i ++   G   +  s++ ++++r+++ g
    KKY21087.1 327 ETVDKEGDLYIrSVCFSPDGRYLATGAEDKLIRVWDIATRKIRNTFS-GHeqDIYSLDFAKNGRHIASG 394
                   568889999654999**********************9988776654.441145788888999998877 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00033
                   EEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE-SSEEEEEEE--TTSEEEEEE CS
  Cytochrom_D1  18 alldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaevkiGlnarsvavSqddryvivgn 95 
                   ++ d  + +i +++ ++ +   s  fa++gR++   + D +v l D+ a + v  + i      va S d+ryv++g+
    KKY21087.1 359 RVWDIATRKIRNTFSGHEQDIYSLDFAKNGRHIASGSGDKTVRLWDIDAGQQVLVLSIEDGVTTVALSPDGRYVAAGS 436
                   6667777777788888777778999**********************99885555555555567999*********97 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.034        67      15      24 ..     294     303 ..     292     303 .. 0.89
   2 ?    5.3   0.0      0.01        20      16      24 ..     342     350 ..     336     350 .. 0.93
   3 ?    3.1   0.0     0.048        96      15      23 ..     424     432 ..     420     433 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.034
                 EE-TTSSEEE CS
        PD40  15 sfSPDGkrla 24 
                 +fS DGk++a
  KKY21087.1 294 RFSQDGKYIA 303
                 8*******97 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.01
                 E-TTSSEEE CS
        PD40  16 fSPDGkrla 24 
                 fSPDG++la
  KKY21087.1 342 FSPDGRYLA 350
                 9******97 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.048
                 EE-TTSSEE CS
        PD40  15 sfSPDGkrl 23 
                 ++SPDG++ 
  KKY21087.1 424 ALSPDGRYV 432
                 89*****86 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.034        68     229     255 ..     345     371 ..     320     378 .. 0.78
   2 ?    3.4   0.0     0.012        24     232     258 ..     390     416 ..     379     423 .. 0.83
   3 !    5.9   0.0    0.0021       4.3     229     254 ..     428     453 ..     416     472 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.034
                 TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclat 255
                 +  yl++   d+ +rvW+++t k+  t
  KKY21087.1 345 DGRYLATGAEDKLIRVWDIATRKIRNT 371
                 7789999999***********998665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.012
                 EEEEEETT-EEEEEETTTTEEEEEEE- CS
      Nup160 232 ylfalsrdgkLrvWnlltgkclatidl 258
                 ++++ s d+++r+W+++ g+++ + ++
  KKY21087.1 390 HIASGSGDKTVRLWDIDAGQQVLVLSI 416
                 7788889*************9987555 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0021
                 TTTEEEEEETT-EEEEEETTTTEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkcla 254
                 +  y++a s+d+ +rvW++++g +l+
  KKY21087.1 428 DGRYVAAGSLDRSVRVWDTTSGYLLE 453
                 7889***************9987765 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0045       8.9     234     275 ..     339     380 ..     322     384 .. 0.85
   2 !    7.0   0.0    0.0016       3.2     229     260 ..     417     448 ..     413     459 .. 0.92
   3 ?   -1.9   0.0      0.86   1.7e+03     227     258 ..     460     491 ..     450     493 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0045
      Nbas_N 234 kmslspdgtllavihfsgklsiwdipslkqrgeweqeeqpgy 275
                  + +spdg  la+      + +wdi + k r +++ +eq  y
  KKY21087.1 339 SVCFSPDGRYLATGAEDKLIRVWDIATRKIRNTFSGHEQDIY 380
                 4679*********9999999**************99999766 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0016
      Nbas_N 229 kdgvfkmslspdgtllavihfsgklsiwdips 260
                 +dgv  ++lspdg  +a+  +  ++ +wd  s
  KKY21087.1 417 EDGVTTVALSPDGRYVAAGSLDRSVRVWDTTS 448
                 7***************************9876 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.86
      Nbas_N 227 eekdgvfkmslspdgtllavihfsgklsiwdi 258
                   +d v+ ++++p+g  l    +   + +w++
  KKY21087.1 460 GHQDSVYSVAFAPNGRDLVSGSLDKTIKMWEL 491
                 679************99999988888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       929  (0.0518155); expected 358.6 (0.02)
Passed bias filter:                      737  (0.0411066); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.50
# Mc/sec: 3566.55
//
Query:       KKY21088.1  [L=381]
Description: putative membrane dipeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-94  315.8   0.0    1.1e-93  313.9   0.0    1.7  2  Peptidase_M19  Membrane dipeptidase (Peptidase family M19)


Domain annotation for each model (and alignments):
>> Peptidase_M19  Membrane dipeptidase (Peptidase family M19)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.024   4.3e+02       2      21 ..      33      52 ..      32      59 .. 0.82
   2 !  313.9   0.0   6.1e-98   1.1e-93      61     319 .]      59     326 ..      49     326 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.024
                   HHCCS.EEEEEE-HHHHHHH CS
  Peptidase_M19  2 llkkliviDghndlplklrq 21
                   l++++++iD+h dlp  lr+
     KKY21088.1 33 LMEESPLIDTHVDLPQILRS 52
                   7899**********977665 PP

  == domain 2  score: 313.9 bits;  conditional E-value: 6.1e-98
                    CCCCHHHHHHHHHHHHHHHHHHGTTTEEE-SSHHHHHHHHHTT-EEEEEEEESCGGGTT-HHHHHHHHHTTEEEEES-SSS-BSSB-BCCGTT... CS
  Peptidase_M19  61 syeeavkatleqidlirrlvrknpeqlklvrtaddierakkegkiavllgiegaealgddlallrafyalGvrvlgltynrnnkfAdgaleek... 153
                    + ++a+++ le++dli+++++++pe+l+ ++++dd+++a+++gkia++lg+eg++ lg++l +lr f+++Gvr+l+lt++++  fA++        
     KKY21088.1  59 TPTNALRDSLEMLDLIQNMIKQHPEHLRYAHSSDDARSAFNDGKIASFLGMEGTHLLGNSLGALRIFAQMGVRYLTLTHTCHSAFASSNGAGGpme 154
                    567899********************************************************************************9987766778 PP

                    ...SSSSB-HHHHHHHHHHHHHT-EEE-TTB-HHHHHHHHHH-SSE.EECCEEBTTTS--TTSB-HHHHHHHH....HTT-EEEE-SSHHHCTTTS CS
  Peptidase_M19 154 ..dedgGLsefGkelVrelNrlgiliDlShlsektfldvlelSkaPvvaSHSnaralcdhpRNltDeqlkaia....esgGvvgvtfvpaflkeka 243
                      +e++GL+++GkelV+elNrlg+++DlSh+s++t++++++lSkaPvv +HS aral dhpRN++D+ l++i     +++Gv++ +f+p f+ + +
     KKY21088.1 155 paHEGNGLTDLGKELVHELNRLGVMVDLSHTSDATAKQAIALSKAPVVWTHSGARALWDHPRNIPDDILNLIGdepgKNKGVIQSVFYPPFIGPPE 250
                    89**********************************************************************73333589**************** PP

                    --BHHHHHHHHHHHHHHT-GGGEEE---TTTTSS-BBTBSSGGGHHHHHHHHHHTTS-HHHHHHHHTHHHHHHHHH CS
  Peptidase_M19 244 eatledvvdhidyivelaGidhVGlGsDfdgggelpegledvsklpnltaeLlrrgyseadiekilggNflrvlee 319
                    +a+++ v+dhi++i++++G +hVG+GsDfdg    +egled+sk+pnl+aeLl+rg+se++++ ++ggN++rv++e
     KKY21088.1 251 SANVSRVADHIEHIARIVGKKHVGIGSDFDGMYSSVEGLEDASKYPNLVAELLSRGWSEEEMKDVMGGNLMRVMDE 326
                    *************************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2529.71
//
Query:       KKY21089.1  [L=356]
Description: putative splicing factor 3b subunit 4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-34  116.8   0.0      5e-16   58.3   0.0    2.2  2  RRM_1           RNA recognition motif. (a.k.a. RRM, RBD, or R
    0.00025   20.7   0.0      0.018   14.6   0.0    2.3  2  RRM_5           RNA recognition motif. (a.k.a. RRM, RBD, or R
     0.0065   16.6   0.0      0.081   13.0   0.0    2.2  2  RRM_7           RNA recognition motif
  ------ inclusion threshold ------
      0.013   15.5   0.0        1.9    8.6   0.0    2.3  2  Cas_Cas2CT1978  CRISPR-associated protein (Cas_Cas2CT1978)
      0.022   14.8   0.2        1.6    8.8   0.0    2.3  2  Limkain-b1      Limkain b1
       0.03   14.0   0.2        3.9    7.2   0.0    2.4  2  OB_RNB          Ribonuclease B OB domain


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0   1.7e-19     5e-16       1      70 []      44     114 ..      44     114 .. 0.98
   2 !   56.6   0.0   5.7e-19   1.7e-15       1      69 [.     132     201 ..     132     202 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 1.7e-19
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 ++VgnL + vt++ + el+ + G+i+++ l++d  t++++g++fVeF s+edAe A + +n   l g++++
  KKY21089.1  44 VYVGNLDERVTDSLVWELMLQAGRIVNVHLPKDrVTQTHQGYGFVEFISEEDAEYAARVMNQVRLYGKPIR 114
                 8****************************************************************999986 PP

  == domain 2  score: 56.6 bits;  conditional E-value: 5.7e-19
                 EEEESETTTSSHHHHHHHHHTTSCE.EEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpi.ksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 lfVgnL p v+e+ L++ F+ fG      k+ rd  + skg++fV F++ e+ ++A++++ng+ l+++e+
  KKY21089.1 132 LFVGNLDPMVSEQVLYDTFGRFGTLvAPPKIARDDANLSKGYGFVSFTNFEASDAAIANMNGQYLMNKEI 201
                 8***********************9456799999**********************************98 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     6e-06     0.018      23     104 ..      38     126 ..      24     139 .. 0.73
   2 !    4.4   0.1    0.0088        26      63      98 ..     170     205 ..     116     216 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6e-06
       RRM_5  23 vaegsVllVyglepdkvnldklFnlfclYgnverv.....kflktkketalvqmgdasaveravqHLnnaklfgkrlevalS...Kqqav 104
                 + +++ + V +l++ +v+ + ++ l+ + g +  v     ++ +t +++ +v+  ++ ++e a   +n ++l+gk+++v      Kq++v
  KKY21089.1  38 QDKEATVYVGNLDE-RVTDSLVWELMLQAGRIVNVhlpkdRVTQTHQGYGFVEFISEEDAEYAARVMNQVRLYGKPIRVNKAsadKQKTV 126
                 55667778888874.78888899999999988777222223567899****************************998853212266665 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0088
       RRM_5  63 kketalvqmgdasaveravqHLnnaklfgkrleval 98 
                  k++ +v   +  a + a+  +n++ l +k++ v+ 
  KKY21089.1 170 SKGYGFVSFTNFEASDAAIANMNGQYLMNKEISVQY 205
                 578999************************999876 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.15   4.5e+02       4      56 ..      44      89 ..      41     118 .. 0.69
   2 !   13.0   0.0   2.7e-05     0.081       4      63 ..     132     184 ..     129     207 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.15
       RRM_7  4 vFvGGlPiDiteeelkatfkefgk.vlvdwPkkaeskkkaaenskaakgyvflv 56
                v+vG l   +t++ +++ + + g+ v v  Pk   ++        +++gy f+ 
  KKY21089.1 44 VYVGNLDERVTDSLVWELMLQAGRiVNVHLPKDRVTQ--------THQGYGFVE 89
                7888888888888888888777762457777653322........233454444 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.7e-05
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksv 63 
                 +FvG l + ++e+ l++tf++fg++ v  Pk a+ +++ +      kgy f+ f++ ++ 
  KKY21089.1 132 LFVGNLDPMVSEQVLYDTFGRFGTL-VAPPKIARDDANLS------KGYGFVSFTNFEAS 184
                 7**********************87.56688788766654......68988888775554 PP

>> Cas_Cas2CT1978  CRISPR-associated protein (Cas_Cas2CT1978)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00063       1.9      24      48 ..      40      65 ..      33      91 .. 0.70
   2 ?    4.6   0.0     0.012        35      21      43 ..     125     147 ..     122     177 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00063
                    EETTEEEEEE-HHHHHHH.HHHHHHH CS
  Cas_Cas2CT1978 24 vragVyvgrvsarVrekl.werveek 48
                     +a Vyvg++ +rV ++l we + ++
      KKY21089.1 40 KEATVYVGNLDERVTDSLvWELMLQA 65
                    5799***********98626555444 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.012
                     SEEEETTEEEEEE-HHHHHHHHH CS
  Cas_Cas2CT1978  21 llEvragVyvgrvsarVreklwe 43 
                      +Ev a ++vg++  +V e+++ 
      KKY21089.1 125 TVEVGAELFVGNLDPMVSEQVLY 147
                     68*****************9975 PP

>> Limkain-b1  Limkain b1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00054       1.6      35      81 ..      77     123 ..      74     128 .. 0.88
   2 ?    3.7   0.0     0.023        67      40      76 ..     170     206 ..     167     216 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00054
  Limkain-b1  35 kvlsisgksavlrfanqeaaeralkrleneDvfGnritvsekprnke 81 
                 +v +  ++   + f ++e ae a + +++   +G+ i v++   +k+
  KKY21089.1  77 RVTQTHQGYGFVEFISEEDAEYAARVMNQVRLYGKPIRVNKASADKQ 123
                 78888899999***************************998866554 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.023
  Limkain-b1  40 sgksavlrfanqeaaeralkrleneDvfGnritvsek 76 
                 s++   ++f+n ea++ a+  +++     + i+v+  
  KKY21089.1 170 SKGYGFVSFTNFEASDAAIANMNGQYLMNKEISVQYA 206
                 5666789*********************999999876 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.012        35       2      15 ..      77      90 ..      77     101 .. 0.81
   2 ?    7.2   0.0    0.0013       3.9       7      35 ..     170     199 ..     169     220 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.012
                EEEE-SSS-EEEEE CS
      OB_RNB  2 tvrahkkGFGFlip 15
                +v+ + +G+GF++ 
  KKY21089.1 77 RVTQTHQGYGFVEF 90
                588899******85 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0013
                 SSS-EEEEECT..TEEEEE-HHHHTTS-TT CS
      OB_RNB   7 kkGFGFlipde.gkeDifippeqmkkamhG 35 
                 +kG+GF++    + +D  i + + ++ m++
  KKY21089.1 170 SKGYGFVSFTNfEASDAAIANMNGQYLMNK 199
                 59*******99*********9999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2425.25
//
Query:       KKY21090.1  [L=150]
Description: putative 60s ribosomal protein l28 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-32  112.4   0.5    2.6e-32  112.0   0.5    1.2  1  Ribosomal_L28e  Ribosomal L28e protein family


Domain annotation for each model (and alignments):
>> Ribosomal_L28e  Ribosomal L28e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   0.5   1.4e-36   2.6e-32       1     113 [.       8     126 ..       8     128 .. 0.93

  Alignments for each domain:
  == domain 1  score: 112.0 bits;  conditional E-value: 1.4e-36
  Ribosomal_L28e   1 LiWelvrnnnsFlvktrtsnkqtFsrepyNltglhsrkysglanskavtVr.eekkgvvlvtkkk.erahkpakawekvkls..knsrkalkqia 91 
                     LiW+l r++nsFlvk+++  + +Fsr+p+Nlt++hsrk +g+an+kav+V+ + ++g+vlvtkk+ +  +kpa+++++v++   + +rk++k +a
      KKY21090.1   8 LIWALNRSHNSFLVKRKEAGGVQFSRDPLNLTNKHSRKQAGFANEKAVGVQdSGNGGIVLVTKKTkTGLNKPASNTNTVTFGknTPTRKIYKGVA 102
                     89**************999********************************6559999999999956779************666789******* PP

  Ribosomal_L28e  92 kll..kkyrpdlrkaalaRlskit 113
                     +++  ++yr+dl + a++R s+i+
      KKY21090.1 103 THVgkNGYRSDLLSDAVQRTSAIR 126
                     ****9999**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.47
# Mc/sec: 956.96
//
Query:       KKY21091.1  [L=333]
Description: putative malate nad-dependent [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-46  157.6   0.8    2.4e-46  157.3   0.0    1.5  2  Ldh_1_N         lactate/malate dehydrogenase, NAD binding dom
    1.8e-43  148.3   0.0    2.5e-43  147.9   0.0    1.2  1  Ldh_1_C         lactate/malate dehydrogenase, alpha/beta C-te
    0.00042   19.4   0.0    0.00059   18.9   0.0    1.3  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
     0.0036   17.2   0.0     0.0085   16.0   0.0    1.7  2  NAD_binding_10  NAD(P)H-binding
  ------ inclusion threshold ------
      0.086   12.4   0.0       0.57    9.7   0.0    2.1  1  Glyco_hydro_4   Family 4 glycosyl hydrolase


Domain annotation for each model (and alignments):
>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.3   0.0   6.8e-50   2.4e-46       2     141 .]       3     146 ..       2     146 .. 0.98
   2 ?   -2.7   0.2       1.6   5.8e+03       1      15 [.     306     320 ..     306     324 .. 0.83

  Alignments for each domain:
  == domain 1  score: 157.3 bits;  conditional E-value: 6.8e-50
                 EEEEETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHHHHHHHHHHHHHCHCCSTS-EEEEE..SSGGGGTTESEEEE--S-SS-TTTTHHHHHHHHHHHH CS
     Ldh_1_N   2 kvavvGaaGgiGqslalllankkladelaLlDiakekleGvaldlshistflsvkvkvse..keeealkdadvvvitagvprkpGetRddLlkvNakIv 98 
                 k av+Ga+GgiGq+l+ll ++++l delaL+D++  +++Gva+dlshis  ++v ++ ++  + ++al+++dvv+i+ag+prkpG+tRddL+k+Na+Iv
  KKY21091.1   3 KAAVLGASGGIGQPLSLLCKASPLIDELALYDVV--NTPGVAADLSHISSVAKVTGYLPKddGLKSALTGCDVVIIPAGIPRKPGMTRDDLFKINAGIV 99 
                 889*******************************..9********************9997789*********************************** PP

                 HHHHHHHHHHTTTSEEEE-SSSHH....HHHHHHHHHHTS-GGGEEE CS
     Ldh_1_N  99 keiveaiakvapnaivlvvsNPvd....iltevlkkasglpkkrvig 141
                 k ++e ia+++p+a+vlv+sNPv+    i++evlkka+ +++kr++g
  KKY21091.1 100 KGLIEGIAQYCPKAFVLVISNPVNstvpIAAEVLKKAGVFDPKRLFG 146
                 *********************************************98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.6
                 EEEEEETTTSHHHHH CS
     Ldh_1_N   1 vkvavvGaaGgiGqs 15 
                 +kva+ G  G+i++ 
  KKY21091.1 306 IKVAIDGLKGNIAKG 320
                 59*********9975 PP

>> Ldh_1_C  lactate/malate dehydrogenase, alpha/beta C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.9   0.0   7.1e-47   2.5e-43       1     167 []     148     324 ..     148     324 .. 0.89

  Alignments for each domain:
  == domain 1  score: 147.9 bits;  conditional E-value: 7.1e-47
                 THHHHHHHHHHHHHHHTS.-GGGEE--EEBSSSTETTEEHHHHHTTSTTSTHHHHHHHHHHHHHHHHHHHHHHTTSSSS-HHHHHHHHHHHHHHHTTH. CS
     Ldh_1_C   1 TtLDivRaktflaekagv.tprsvkvtViGgHsgvtiipllsqvkellklsekqleeliervqnggdevvkakkGagsatlsmAvAgakfveallrdt. 97 
                 T+LD+vRa+tf+   +g  +p++  ++ViGgHsg+ti+pl+s +k ++++  ++l++l++rvq+ggdevvkak+GagsatlsmA+Ag +f+e ll++  
  KKY21091.1 148 TSLDVVRAETFIQDLSGEkDPSKTVIPVIGGHSGETIVPLFSLAKPSVSIPADKLDALVHRVQFGGDEVVKAKDGAGSATLSMAYAGFRFAERLLKAAk 246
                 99************999878888999***********************************************************************95 PP

                 ..TEEE.EEEEEEESCCCECCS.......SEEEEEEEEEEETTEEEEE-----.--HHHHHHHHHHHHHHHHHHHHHHCCH CS
     Ldh_1_C  98 ..keil.sagvyldgevglkdq.......eieyfsvPvvlgknGvekvleilk.lndfeeekleksvkeLkkeiekglefv 167
                    +i+ +++vyl+g  g           ++++fsvPv lg  G ek +++l+  n+ e++ ++ +++ Lk +i kg+efv
  KKY21091.1 247 geSGIVePTFVYLPGVPG---GeaisketGCDFFSVPVELGSSGAEKAVNVLSsANEHEQKLIKVAIDGLKGNIAKGVEFV 324
                 542333245666666544...04446677*******************9999889***********************996 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.6e-07   0.00059       1      94 [.       5      97 ..       5     140 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.6e-07
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrlee.lkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvk 94
                +v+G++G +G+ l + L ++ + + e+  +D+++ p +  +ls++     ++g + + d l+ al g dvvi  a++    g++++d + k+n  
  KKY21091.1  5 AVLGASGGIGQPL-SLLCKASPlIDELALYDVVNTPGVAADLSHISSVAKVTGYLPKDDGLKSALTGCDVVIIPAGIPRKPGMTRDD-LFKINAG 97
                59*********98.78899999889*******************99999*******************************9977777.7777644 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.4e-06    0.0085       1     107 [.       8     128 ..       8     161 .. 0.78
   2 ?   -2.7   0.0       1.3   4.7e+03     114     145 ..     225     256 ..     212     272 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.4e-06
                     TTTSHHHHHHHHHHHHC-...T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC......HHHH.......HH CS
  NAD_binding_10   1 GAtGkvGrllvkellarg...ghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggk......deeg.......ak 79 
                     GA+G++G+ l     a+    ++++  +v +p  +a+l++ + +  v+g + + + l++al+g+d+V++ +g  +k      d          +k
      KKY21091.1   8 GASGGIGQPLSLLCKASPlidELALYDVVNTPGVAADLSHISSVAKVTGYLPKDDGLKSALTGCDVVIIPAGIPRKpgmtrdD--LfkinagiVK 100
                     8999999988755555547555556667899999999987799****************************888887766430..2555666799 PP

                     HHHHHHHHCT--EEEEEEETTTTSGCGC CS
  NAD_binding_10  80 nivdaakeagvkRfvlvsaigvgdevpg 107
                      +++   +   k fvlv +  v+  vp 
      KKY21091.1 101 GLIEGIAQYCPKAFVLVISNPVNSTVPI 128
                     9999999999999999988887766654 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.3
                     HHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-C CS
  NAD_binding_10 114 kellkaylaakraaeellrasgldwTivrpgg 145
                     + +l+ ++a  r ae+ll+a + +  iv p++
      KKY21091.1 225 SATLSMAYAGFRFAERLLKAAKGESGIVEPTF 256
                     45667777888888888888777777777765 PP

>> Glyco_hydro_4  Family 4 glycosyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00016      0.57     126     150 ..     101     125 ..       8     140 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00016
                    HHHHHHHHH-TTSEEEE-SSSHHHH CS
  Glyco_hydro_4 126 eIakdieelcPdawvlnytNPaavv 150
                     +++ i ++cP+a+vl  +NP+  +
     KKY21091.1 101 GLIEGIAQYCPKAFVLVISNPVNST 125
                    5678899**************9754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2301.13
//
Query:       KKY21092.1  [L=302]
Description: putative decapping enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-28   97.7   0.0    6.2e-28   97.1   0.0    1.3  1  DCP1      Dcp1-like decapping family


Domain annotation for each model (and alignments):
>> DCP1  Dcp1-like decapping family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.0   3.5e-32   6.2e-28       3     105 ..      67     181 ..      65     190 .. 0.94

  Alignments for each domain:
  == domain 1  score: 97.1 bits;  conditional E-value: 3.5e-32
                 HHHHHHHHHH-TTEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEETT.....S-EEEEEEESSSS--EEEEESSGGGEEEETTEEEEEETTT.. CS
        DCP1   3 elnlrvLqrldpsiesildtashvvlYkfnessqeWektdieGtLfvvkrsk....epryglivlNrkslenliedltkelelelqgeyliyrteee.. 95 
                 e+nl  L+r+ p i++il++as++v+Y f++s+++Wek ++eGtLfv++ +     e+ry++i+lNr++len+  +l +e ++e+ +ey+i+++++e  
  KKY21092.1  67 EVNLLTLRRYNPAIRTILSKASYAVVYVFSPSTSSWEKNGVEGTLFVCQLEPgpigEDRYNVIILNRRGLENFEAQLLDEGDVEITDEYVILNVKDEgs 165
                 89************************************************5555558**************************************999* PP

                 ......EEEEEEESSH CS
        DCP1  96 ......evfgiWfyee 105
                       +v+g+W+++e
  KKY21092.1 166 stdqtqKVYGLWIFCE 181
                 *************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2074.39
//
Query:       KKY21093.1  [L=472]
Description: hypothetical protein UCRPC4_g03888 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-52  177.9   0.0    8.3e-37  127.2   0.0    2.8  2  LIDHydrolase   Lipid-droplet associated hydrolase
     0.0036   16.6   0.0      0.012   14.9   0.0    1.8  2  Hydrolase_4    Serine aminopeptidase, S33
     0.0037   17.9   0.0     0.0052   17.4   0.0    1.4  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.061   12.4   0.3       0.93    8.5   0.1    2.6  3  DUF1749        Protein of unknown function (DUF1749)
      0.076   12.9   0.0       0.15   11.9   0.0    1.4  1  DUF2847        Protein of unknown function (DUF2847)
      0.096   11.8   0.0       0.18   10.9   0.0    1.4  1  LCAT           Lecithin:cholesterol acyltransferase
       0.16   11.4   0.0       0.27   10.7   0.0    1.3  1  DUF900         Alpha/beta hydrolase of unknown function (DUF9


Domain annotation for each model (and alignments):
>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   7.5e-16   1.9e-12       3      54 ..      28      78 ..      26      85 .. 0.88
   2 !  127.2   0.0   3.2e-40   8.3e-37      38     255 ..      99     376 ..      88     385 .. 0.89

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 7.5e-16
  LIDHydrolase  3 ilivlipGNPGlveFYetFlsllseklnpelevlgishaGfeleeeekeake 54
                   +i++ipGNPGl+++Y +Flslls++l p+  ++g shaGfe+++++++a++
    KKY21093.1 28 RIIYFIPGNPGLISYYSDFLSLLSKSL-PDSVIYGASHAGFEVDSDDADAQK 78
                  589***********************5.899*************99966554 PP

  == domain 2  score: 127.2 bits;  conditional E-value: 3.2e-40
  LIDHydrolase  38 ishaGfeleeeekeakenekvfsLedQiehkedflkellek...................aksekdvklilvGHSvGaYialevlkrlsers..... 110
                    s+   e +    ++++++k f+L+dQie  ++ l+ +++                    +++ +++++il+GHSvG+Yi++e++++++e       
    KKY21093.1  99 RSFLETETKI---KTRRSGKPFGLRDQIEITRERLEGVVKAlhedgrsgsgeletamkttREKGSKRQVILIGHSVGCYISMEIIRHYQEVIiarss 192
                   4544444444...5599******************9999989999**********999877778899*******************99887688899 PP

  LIDHydrolase 111 .........ikkvvlLfPtiediakSpngkkltkllaylpflalvvglllrvl.kllPesvks..............lliklvlgkssspkeavett 183
                            i+ + lL+Pt+++i+ Sp+g+++++ll+ +p++  ++ +l++ l ++l+ +  +               l+++++++  s  +a+ tt
    KKY21093.1 193 settsididIDLALLLTPTLTHISLSPSGRLVAPLLNNIPYIPEILHALVSGLtSTLSLIRFKtpssftstphnilnALLSTIMSHPPS--SAISTT 287
                   9*********************************************9999999988877766667778889998777888888855544..69**** PP

  LIDHydrolase 184 lkfvkspevvrqalhlakdEmeeikeddeeedvllkknkeka.................lvfyfgkkDhWvpeetrdelkellgeekle 255
                    +f++s+ +v+qa+ +++dEm+ei +d++e+ v+++   +++                 lv++f+++DhWv ++ r+el++++  ++++
    KKY21093.1 288 SRFLRSQMGVKQAIWMGRDEMREIWDDEWEDRVWGTDSSQQKaggvvkvdgenstkhtkLVLLFADQDHWVENRVREELIRRRRPGSMN 376
                   ***********************************99988888*************************************998876665 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.7e-06     0.012      62      99 ..     148     185 ..     145     249 .. 0.90
   2 ?   -1.6   0.0      0.52   1.3e+03     192     216 ..     345     369 ..     332     381 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.7e-06
  Hydrolase_4  62 laafvekvkeehpelplfllGhSmGGliallyllrypd 99 
                  l++++++ +e+ ++++++l+GhS+G +i+++++ +y++
   KKY21093.1 148 LETAMKTTREKGSKRQVILIGHSVGCYISMEIIRHYQE 185
                  67889999999999********************9998 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.52
  Hydrolase_4 192 lPllllhGeaDkvvdpeasrelyer 216
                  + l ll +++D+ v+++ ++el++r
   KKY21093.1 345 TKLVLLFADQDHWVENRVREELIRR 369
                  6789999**********99999987 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     2e-06    0.0052      42     121 ..     114     247 ..      35     380 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2e-06
                    GCS--HHHCHHH.HHHHCCTT..........................TTSEEEEEETCHHHHHHHHHHCC....................EEEEES CS
  Abhydrolase_6  42 pppldledladl.aalldelaa........................gggpvvlvGHSlGGalalaaapla..................lvvgvlld 94 
                    ++p++l+d  ++ ++ l+++++                        + ++v+l+GHS G++++++  ++                   ++ ++ll 
     KKY21093.1 114 GKPFGLRDQIEItRERLEGVVKalhedgrsgsgeletamkttrekgSKRQVILIGHSVGCYISMEIIRHYqeviiarsssettsididIDLALLLT 209
                    555666554333433333333334444455666666677778888789999*************94444458878888888888876533337777 PP

                    -............----TTT.S----TTHHHHHHTT-C CS
  Abhydrolase_6  95 p........pp..talpagl.laaalelllallallrl 121
                    p        p+  +++p+++ ++ ++e+l+al + l++
     KKY21093.1 210 PtlthislsPSgrLVAPLLNnIPYIPEILHALVSGLTS 247
                    75555444322343333333333333333333333333 PP

>> DUF1749  Protein of unknown function (DUF1749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1   0.00036      0.93      91     126 ..     152     183 ..     137     200 .. 0.76
   2 ?   -1.1   0.0      0.31   7.8e+02      44      73 ..     229     261 ..     226     265 .. 0.83
   3 ?   -0.3   0.0      0.17   4.4e+02     229     254 ..     336     369 ..     321     393 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00036
     DUF1749  91 veYlkktksGeekkekvvlmGHstGsqdvlyYltss 126
                 ++  +++  G  +k++v+l+GHs G+   +  + + 
  KKY21093.1 152 MKTTREK--G--SKRQVILIGHSVGCYISMEIIRHY 183
                 4433333..4..899***********8777766655 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.31
     DUF1749  44 ltvpyvkelanal...deagwsvvelqlsssyg 73 
                   +py+ e+ +al     +  s++++++ ss++
  KKY21093.1 229 NNIPYIPEILHALvsgLTSTLSLIRFKTPSSFT 261
                 679*********965335789999999999997 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.17
     DUF1749 229 e.........pllillsekDefvpesvdkedller 254
                           +l++l++++D+ v++ v++e l++r
  KKY21093.1 336 VdgenstkhtKLVLLFADQDHWVENRVREE-LIRR 369
                 444455555589999*****9999998765.5554 PP

>> DUF2847  Protein of unknown function (DUF2847)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     6e-05      0.15       8      49 ..     151     192 ..     147     203 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6e-05
     DUF2847   8 qleeileeskekpvlifKhstrcsiSaealkelekeleeeee 49 
                  ++++ e+ ++++v+++ hs  c iS+e ++++++ + ++++
  KKY21093.1 151 AMKTTREKGSKRQVILIGHSVGCYISMEIIRHYQEVIIARSS 192
                 5677788888999********************998876664 PP

>> LCAT  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     7e-05      0.18     115     144 ..     155     185 ..     146     221 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7e-05
        LCAT 115 alk.lsgkkvvliaHSmGnllvlyflkwvea 144
                 + +  s+++v+li+HS+G+ ++++ ++++++
  KKY21093.1 155 TREkGSKRQVILIGHSVGCYISMEIIRHYQE 185
                 444368899**************99998875 PP

>> DUF900  Alpha/beta hydrolase of unknown function (DUF900)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00011      0.27      78     114 ..     146     182 ..     138     207 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
      DUF900  78 dalekllrylatkksakkihllaHSmGtwlvlealrq 114
                  +le+++++ ++k s++++ l+ HS G ++ +e +r+
  KKY21093.1 146 GELETAMKTTREKGSKRQVILIGHSVGCYISMEIIRH 182
                 5899*****************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 2990.55
//
Query:       KKY21094.1  [L=1842]
Description: putative snf2 family helicase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-43  147.2   0.5      1e-42  146.1   0.5    1.5  1  SNF2_N         SNF2 family N-terminal domain
    2.1e-16   60.2   0.0    5.4e-16   58.9   0.0    1.7  1  Helicase_C     Helicase conserved C-terminal domain
      7e-10   39.2   0.0    3.6e-09   36.9   0.0    2.3  2  ResIII         Type III restriction enzyme, res subunit
    1.5e-08   34.6   0.0    9.3e-08   32.1   0.0    2.5  2  SAM_2          SAM domain (Sterile alpha motif)
    2.3e-07   30.3   0.2    4.7e-07   29.3   0.2    1.5  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
    1.2e-06   28.4   1.3      0.003   17.3   0.0    3.2  3  SWI2_SNF2      SWI2/SNF2 ATPase
     0.0018   18.7   0.2      0.016   15.6   0.0    2.6  2  SAM_1          SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.1   0.5   4.1e-46     1e-42      45     346 ..    1023    1336 ..     956    1338 .. 0.75

  Alignments for each domain:
  == domain 1  score: 146.1 bits;  conditional E-value: 4.1e-46
                  ....HHHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---...........S-EEEE--HHHHHHHHHHHHHH-TTS-....EEE--SSHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF
      SNF2_N   45 veesaeakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkek....krkdtlagptLivvPaslldqWeneierhvsssa....lrvlvyggqk 133 
                  +  ++ a ++ +G++La+ mGLGKT+qv++++ ++ ++++++  +    +  + ++  +L++vPasl d+W++e+  ++++sa    +r l + ++ 
  KKY21094.1 1023 MWREVVAGSKEHGCLLAHTMGLGKTMQVITFLSTLSQASKSQDPRirnqVPLRLRQSKALVLVPASLTDNWVDEFCMWTPQSAdlgrIRPLQHVSS- 1118
                  45567788999**********************77765555544466555556667779********************99852211444444444. PP

                  H-----------------EEEE-HHHHHHHT............TTS-S...-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  134 kmkkkntkvapklladydvvittYdvlsreaelq......kkrsvlkq...vewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsle 221 
                     k++     +++++ +v++++Yd  ++ + l+        r+++++   ++ + ++ DE+h++kn + k+  a+sk++++ r+ ltGTP+ n++ 
  KKY21094.1 1119 ---KQRPLEITAWANEGGVLVVSYDLFRNLV-LKntegvpRDRHEIVRgqlLDANVIIADEAHRMKNINGKIFHAASKFKSKSRIALTGTPLANNVD 1211
                  ...444556999*************999655.34689999555555541225689****************************************** PP

                  HHHHHHHHH-TTTT--HHHHHHHTHHHHH............HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH..... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  222 dlygLlkfLreepfgekqtfdkllqrpie............aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllev 306 
                  ++y++++ + ++ +g++  f+  +++pi             +++ k+ + L + l++ + r+  + ++k++P+kte  + ++ls+++rk+Y+   + 
  KKY21094.1 1212 EYYAMIQWVAPGYLGTFVQFKAKYSEPIVqglyqdstrhekRHSLKKLHLLSKTLAPKINRADITVISKDMPQKTEFFLTVSLSEEQRKMYTMFVN- 1307
                  ***********************************99966666666777777888899999999999*************************3333. PP

                  ...............HHHHHH-HHH-HHHHHHHHHHHHH- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  307 lrkkalakllkrseaalkssskskekilelllelrqacnh 346 
                          +l ++++  +    s+++i++ l  l+  cnh
  KKY21094.1 1308 -------NMLGNHDVDRT----SNTRIFSWLALLALLCNH 1336
                  .......22222222211....223466666666666666 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   2.1e-19   5.4e-16       7     111 .]    1413    1521 ..    1407    1521 .. 0.89

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 2.1e-19
                  HHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C    7 lell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn..kgesd.vLiatdvaerGidipkvnlVinfdlprnvts 99  
                   +++ ++ + g+k+l+f++t   l+  + lle ++ik+ +++g+++ ++r+ + ++fn   ++++ +L++ ++++ G++ip++n Vi++d+ +n+t 
  KKY21094.1 1413 ENIIrQSIAAGDKVLLFSHTLLGLDYYERLLEDRKIKYFRIDGSTNISHRQNATKAFNkkMDDRKvFLVTVKAGGLGLNIPGANRVIIIDFGFNPTW 1509
                  4444667799************9998788889999***********************65467777******************************* PP

                  HHHHHTTSSSTT CS
  Helicase_C  100 yiqriGRtgRag 111 
                    q+iGR++R g
  KKY21094.1 1510 EEQAIGRAYRLG 1521
                  **********76 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.8   4.6e+03      82     122 ..     916     962 ..     906     995 .. 0.60
   2 !   36.9   0.0   1.4e-12   3.6e-09       7     169 ..    1015    1205 ..     966    1207 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.8
                 ...GEEEESSS-B--.......-SEEEEEHHHHHHTH.......... CS
      ResIII  82 ykeigkkvsgdkkkakekdstnkkilvttiqsldadseee......e 122
                 +k+ +k ++g++++ +  +++++ i++t   + +++++e       +
  KKY21094.1 916 KKALQKRLKGKERSDTGPHDNENFITLTPHRKRKRQIKESqealewQ 962
                 44456666666666666666777777766666666664433333321 PP

  == domain 2  score: 36.9 bits;  conditional E-value: 1.4e-12
                  HHHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S....................-EEEEESSHHHHHHHHHHGGGGTGG....... CS
      ResIII    7 yQeeaienlleklks.krdkrglikmaTGtGKTlvaaklierllkkgkee...............kflflvprkslleqtleefkkflseayke... 84  
                  +Q+  +e +  ++ +  +++  l++++ G GKT+  + +   l+++ k +               k+l+lvp  sl++ + +ef  ++++ ++    
  KKY21094.1 1015 HQIAGVEFMWREVVAgSKEHGCLLAHTMGLGKTMQVITFLSTLSQASKSQdprirnqvplrlrqsKALVLVPA-SLTDNWVDEFCMWTPQSADLgri 1110
                  44444444444444334555556*********************9999889*********************6.8************9998755776 PP

                  ...GEEEESSS-B--.......-SEEEEEHHHHHHTH........HHHTTT-S..........EEEEETGGGTTS.T.TTHHHHHT---SEEEEEES CS
      ResIII   85 ...igkkvsgdkkkakekdstnkkilvttiqsldadseeeeeeseellrdrfd..........viiiDEaHrlgakk.swreilekfkeavllglTA 167 
                     +  + +++  +     +++  +lv++++ + +      +++e   rdr++          vii DEaHr++  + ++ +++ kfk++ +++lT+
  KKY21094.1 1111 rplQHVSSKQRPLE-ITAWANEGGVLVVSYDLFRNLV---LKNTEGVPRDRHEivrgqlldanVIIADEAHRMKNINgKIFHAASKFKSKSRIALTG 1203
                  66422223333333.36799999********999999...66666666776667777777999**********99645777779************* PP

                  S- CS
      ResIII  168 Tp 169 
                  Tp
  KKY21094.1 1204 TP 1205
                  *9 PP

>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   3.6e-11   9.3e-08      21      65 ..      44      89 ..      29      90 .. 0.91
   2 ?   -2.7   0.0       2.6   6.7e+03       5      30 ..     357     382 ..     356     384 .. 0.80

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 3.6e-11
                GHHHHHHTTCSHHHHHTTSCHHHHH.HTTHHHHHHHHHHHHHHHHH CS
       SAM_2 21 ytdnFrdagitgaelllrlteedLk.rlGitsvghrkkilkkiqel 65
                ++  Frd+ i+g++ll  l+ edL  +l+i+s+g+r+ il++i+ l
  KKY21094.1 44 VVSSFRDNDISGELLLTSLNNEDLRdDLKIQSFGQRRTILQAINYL 89
                6789********8888********88******************88 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.6
                 HHHHHHHHHHHTTTGGGHHHHHHTTC CS
       SAM_2   5 sledvaeWLrsiglkqytdnFrdagi 30 
                 + +++a W+++++  q  + +r+  i
  KKY21094.1 357 TMQNTAHWFGQHQIDQPMERLRERRI 382
                 6799******9998888888877665 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.2   1.8e-10   4.7e-07      18     154 ..    1381    1523 ..    1377    1637 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 1.8e-10
  ERCC3_RAD25_C   18 pmtaefykeylkakskkkkllyvmnpnkfracefLikyhekrgDkiivfsDnvfaLkeyakklk.....kpyiyGetseaerlkilqkfkknpk 106 
                     + ++ f++e l++ ++   l  +  + k + +e +i+   + gDk+++fs  +  L  y + l+     +  i G+t+ ++r++  ++f+k+ +
     KKY21094.1 1381 DFSQGFFQEQLDQLKSIPDLRDTRHSVKATLIENIIRQSIAAGDKVLLFSHTLLGLDYYERLLEdrkikYFRIDGSTNISHRQNATKAFNKKMD 1474
                     56677888888887777777788888999999***************************987652111044589******************99 PP

  ERCC3_RAD25_C  107 vntifls..kvgDtsiDlPeanvliqisshfgsrrqeaqrlGriLrakkk 154 
                      + +fl   k g   +++P an +i i++ f     e q +Gr  r  +k
     KKY21094.1 1475 DRKVFLVtvKAGGLGLNIPGANRVIIIDFGFNPT-WEEQAIGRAYRLGQK 1523
                     9999997225588899************999876.567999999987665 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.66   1.7e+03      56     110 ..     421     471 ..     401     491 .. 0.67
   2 !    8.3   0.1   0.00065       1.7       1      52 [.    1015    1068 ..    1015    1070 .. 0.83
   3 !   17.3   0.0   1.2e-06     0.003     122     163 ..    1169    1211 ..    1134    1269 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.66
   SWI2_SNF2  56 tDRkdLdkQlsktfakageekpkqaesrkeLkellekesekiifttiqKfeee.ek 110
                  D   Ld+ + +++++  +e   +a+s+++L+       +++i +ti K++++ ++
  KKY21094.1 421 SDGVSLDDATWAEIQEEADEM--KAQSSSHLTPDH---VNGVIEATILKYTDKyKQ 471
                 566667777777777554443..677777776544...689999999999854222 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00065
   SWI2_SNF2    1 qQyravekavervkegdrkgG.viWHtqGSGKsltmvflakklle.eelknpkv 52  
                  +Q+ +ve + ++v +g++++G ++ Ht G GK+++ +++ + l + ++ ++p++
  KKY21094.1 1015 HQIAGVEFMWREVVAGSKEHGcLLAHTMGLGKTMQVITFLSTLSQaSKSQDPRI 1068
                  8************996655552789************99999999457777776 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 1.2e-06
   SWI2_SNF2  122 iivlvDEaHRsqy.gelakklrkalpnaafigFTGTPilkkdk 163 
                   ++++DEaHR +  ++   +  + ++  ++i++TGTP+ ++  
  KKY21094.1 1169 NVIIADEAHRMKNiNGKIFHAASKFKSKSRIALTGTPLANNVD 1211
                  489*******97514555677889**************98654 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   6.2e-06     0.016      21      63 ..      45      89 ..      43      90 .. 0.90
   2 ?   -0.8   0.0      0.83   2.1e+03      13      40 ..    1640    1668 ..    1637    1671 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.2e-06
                HHHHHTTTSSHHHHT.TSCHHHHHH.CTTTSHHHHHHHHHHHHHH CS
       SAM_1 21 adlFrageidgdaLl.llteddLek.lgvtllGHrkkIlyaIqrL 63
                +++Fr++ i+g+ Ll  l+ +dL++ l++ ++G r+ Il+aI  L
  KKY21094.1 45 VSSFRDNDISGELLLtSLNNEDLRDdLKIQSFGQRRTILQAINYL 89
                579*********98736*************************765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.83
                  HHTTSGGGHHHH.HTTTSSHHHHTTSCHH CS
       SAM_1   13 esiglgqYadlF.rageidgdaLlllted 40  
                  e  + + Y++   ++++i ++ L + +e+
  KKY21094.1 1640 EREDPEAYRKMMaEREKIRMEDLRQAQEQ 1668
                  5567789****************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1842 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       926  (0.0516482); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.11u 0.32s 00:00:01.43 Elapsed: 00:00:00.53
# Mc/sec: 10551.11
//
Query:       KKY21095.1  [L=536]
Description: putative glutathione synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.2e-131  437.6   0.0   3.6e-131  437.4   0.0    1.0  1  GSH_synth_ATP  Eukaryotic glutathione synthase, ATP binding d
    5.2e-28   97.5   0.0    9.2e-28   96.7   0.0    1.4  1  GSH_synthase   Eukaryotic glutathione synthase


Domain annotation for each model (and alignments):
>> GSH_synth_ATP  Eukaryotic glutathione synthase, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  437.4   0.0    4e-135  3.6e-131       2     375 .]      14     535 ..      13     535 .. 0.91

  Alignments for each domain:
  == domain 1  score: 437.4 bits;  conditional E-value: 4e-135
                    xxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  GSH_synth_ATP   2 eqleelveeakdwalahGllvr...kaekkekkessesathapvtLlPspfprklfeeAvevqkayneLyakvasdeefLeevleevikvDeFtak 94 
                    +q e+l+ ++k+w+++hGl+vr   +  + e++ +s+ at+apvtL+Pspfpr +fe+A+++q+ yneLya++++dee+Le+vl+++i+vD F+++
     KKY21095.1  14 AQKEHLAFTVKNWSIQHGLAVRpnpTFVAAEHDPNSSLATNAPVTLFPSPFPRVAFEHAQQLQEPYNELYARISNDEEWLEDVLKDLIDVDGFVEN 109
                    57899999**************8764445566677999********************************************************** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxx........xxx RF
  GSH_synth_ATP  95 LweiyekvkkeglvqklslglfRsDYllheeee...keelslkqvEfNtisssfgglsskvselhryllk.........kekkkk........sll 170
                    Lw+ + kvk+eg+vq+lslglfRsDY+l+++     ++++s+kqvEfNtisssfggls+ vs+lh++ll+              +         ++
     KKY21095.1 110 LWKCHLKVKEEGYVQNLSLGLFRSDYMLDTSAPetdTTDPSIKQVEFNTISSSFGGLSALVSSLHTHLLSgkpsnpkayP----EhslfrsseDST 201
                    ******************************8878888899******************************8877654330....156665553334 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................................... RF
  GSH_synth_ATP 171 ksnelpenealeelaeglakAhkaysk..................................................................... 197
                     +n  p+n ++++la+++a+Ah+ay+                                                                      
     KKY21095.1 202 IANVPPANASVSTLARAIASAHTAYGLsksspslplcvlflvqpternifdqlaiseyltnelsipvfrlptstilgttsipssnksrpllytpps 297
                    4444789******************54457899*************************************************************** PP

                    ..........................................xxxxxxxxxxxxxxxxxxxxxx....xxxx..xxxxxxxxxxxxxxxxxxxxxx RF
  GSH_synth_ATP 198 ..........................................PsiatqLagtKkvqqvLakpgv....Lerf..leekeeveklretFaglysLdk 245
                                                              P+++tqLagtKkvqq+L+++      L++f    +++ ++++r+tFa +y+L  
     KKY21095.1 298 spatqyeatvvyfralyapseydspdswtarihlersaaikcPTVLTQLAGTKKVQQALTSSPPladhLKNFlpGASPTLLSSIRATFAPQYPLTP 393
                    ***********************************************************9988734446666765889999*************76 PP

                    xxxx.xxx..xxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  GSH_synth_ATP 246 dese.gke..avklal..eepekyVLKPqrEGGGnNiYgedipefLkklk.eeersaYILMelieppavknvlvraegevekeevisELGiygtil 335
                     +++ g +  + +lal  +++e++VLKPqrEGGGnN+Y+ dip fL++lk + e +a+ILMeli+pp++knv++r++g+v++++v+sELGi+g il
     KKY21095.1 394 MSNKvGASnpGLDLALnaTTAENHVLKPQREGGGNNVYKLDIPPFLRSLKdKAEYKAWILMELIKPPDAKNVVLRQDGQVVTGDVVSELGIFGGIL 489
                    6545554433667777667889****************************8899****************************************** PP

                    xxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  GSH_synth_ATP 336 fkke......evlvneeaGyllRtKasssdegGVaaGfgvlDsplL 375
                    ++k+      ++l n+++GyllRtK+++s+egGVaaGf++lDs+lL
     KKY21095.1 490 WEKTpsskepRILNNNSGGYLLRTKGKESNEGGVAAGFSSLDSILL 535
                    9999999999*********************************997 PP

>> GSH_synthase  Eukaryotic glutathione synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.0     1e-31   9.2e-28       2     103 .]     238     347 ..     237     347 .. 0.95

  Alignments for each domain:
  == domain 1  score: 96.7 bits;  conditional E-value: 1e-31
                   EEEEEE-TT-TTHHHHHHHHHHHHHCC.-EEEEE-HHHHHHHEEE....TT-EEEETTT......EEEEEEEECS-SSGGG--SHHHHHHHHHHHHS CS
  GSH_synthase   2 ivlfvvqenernvfDqrlleyellekh.ikvirvtleelkeetkl.eekekkkllldkk......kevsvvYfRagYapkdypseeeweaRlllErs 90 
                   +vlf+vq+ ern+fDq ++++ l+++  i+v+r+ ++++  +t++ ++++++ ll++++      +e +vvYfRa+Yap++y s+++w+aR +lErs
    KKY21095.1 238 CVLFLVQPTERNIFDQLAISEYLTNELsIPVFRLPTSTILGTTSIpSSNKSRPLLYTPPsspatqYEATVVYFRALYAPSEYDSPDSWTARIHLERS 334
                   8***********************9889***************99566689999999889************************************* PP

                   SSEEET-HHHHHH CS
  GSH_synthase  91 saikcPsiayqLa 103
                    aikcP++ +qLa
    KKY21095.1 335 AAIKCPTVLTQLA 347
                   ***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 3384.76
//
Query:       KKY21096.1  [L=310]
Description: putative high osmolarity signaling protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-09   35.8   0.1    8.1e-09   35.0   0.1    1.4  1  SH3_1     SH3 domain
      4e-07   29.8   0.0    7.1e-07   29.0   0.0    1.4  1  SH3_9     Variant SH3 domain
      3e-05   23.6   0.0    5.9e-05   22.7   0.0    1.5  1  SH3_2     Variant SH3 domain
    0.00063   19.7   1.5    0.00063   19.7   1.5    1.6  2  DUF5134   Domain of unknown function (DUF5134)
  ------ inclusion threshold ------
          1    9.7   6.2        1.3    9.4   3.5    2.1  2  DUF4149   Domain of unknown function (DUF4149)
        1.5    9.2   7.9        3.9    7.9   7.9    1.6  1  DUF2569   Protein of unknown function (DUF2569)


Domain annotation for each model (and alignments):
>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.1   2.7e-12   8.1e-09       1      48 []     257     304 ..     257     304 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 2.7e-12
                 EESSSBEXSS..TTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   1 iAlYDYeaee..sdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 +A+Y Yea+   ++E+sf k ++++v++ s   Ww+++  + g++G+ Ps
  KKY21096.1 257 KAIYSYEANPddANEISFSKHEILEVSDVSGR-WWQAKKET-GETGIAPS 304
                 7********98899**************8888.*******8.7******8 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   2.4e-10   7.1e-07       1      48 [.     258     307 ..     258     307 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 2.4e-10
       SH3_9   1 Alypyepredd..eLsLqrGDvitvieesedgWlegsl.tGrtGlvPanyv 48 
                 A+y ye+  dd  e+s+++ +++ v++  ++ W+++++ tG+tG  P+ny+
  KKY21096.1 258 AIYSYEANPDDanEISFSKHEILEVSDV-SGRWWQAKKeTGETGIAPSNYL 307
                 89***96666666*************88.9*******98***********6 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0     2e-08   5.9e-05       3      54 ..     257     307 ..     255     309 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2e-08
                 EESS-B-S..CGCCB--B-TTEEEEEE..EEEECTTEEEEEE.CCCEEEEEGCGE CS
       SH3_2   3 raiedyvg..edkseLsfkkGdvikvlslgskdsdgwwegev.gGrvGlfPsslv 54 
                 +ai +y++   d +e+sf k++++ v       s+ ww++ +  G  G++Ps+++
  KKY21096.1 257 KAIYSYEAnpDDANEISFSKHEILEVS----DVSGRWWQAKKeTGETGIAPSNYL 307
                 666667664488899***********7....7889*****999**********97 PP

>> DUF5134  Domain of unknown function (DUF5134)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.98   2.9e+03      98     111 ..      62      75 ..      22      88 .. 0.62
   2 !   19.7   1.5   2.1e-07   0.00063      32      88 ..      92     156 ..      71     171 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.98
     DUF5134  98 pggvplvtgvlavy 111
                  +++p  +++  vy
  KKY21096.1  62 RAAFPNYAWWGIVY 75 
                 33334444444444 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 2.1e-07
     DUF5134  32 q.....lavvfalaalwflvlavvrrr...ataarrlahlyhavmmlAMvyMaaamalaaggghs 88 
                 +     ++v f++a+l+f+++av +     ++a++++a++  ++ m A ++M+ +  ++++++ +
  KKY21096.1  92 AdtysiAIVGFLAAGLVFTTSAVNSLVyspQGAEEAAAAGFILLSMIAIIWMFYFGSTPQAAHRA 156
                 22344679***************76669999999999****************999555555444 PP

>> DUF4149  Domain of unknown function (DUF4149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.3     0.024        73      29      89 ..      28      87 ..      23      94 .. 0.66
   2 ?    9.4   3.5   0.00044       1.3       5      96 ..      69     155 ..      67     159 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.024
     DUF4149 29 qfgelqsklFplyfglglalsvlllltevavgseklaseellqlllllvvllltllnafyl 89
                 fg + +  F l +   ++l+ l+++ + +v     a+    ++++++ +l +++  ++++
  KKY21096.1 28 NFGHIIGDPFALATISISVLAWLIAFISSIVA-DVRAAFPNYAWWGIVYMLGCIAGVTVVF 87
                57777777777777766666666666555555.3555555777777777777777666665 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00044
     DUF4149   5 lllGsqlwvtfvvapvlfrsLprhqfgelqsklFplyfglglalsvlllltevavgseklaseellqlllllvvllltllnafylepritsl 96 
                 +++G++ +++ +++ ++ ++ + ++  +++   F +   + + ++v  l++++     + a+e+ ++  +ll +++++ +++f+ +p++++ 
  KKY21096.1  69 AWWGIVYMLGCIAGVTVVFASDSADTYSIAIVGFLAAGLVFTTSAVNSLVYSP-----QGAEEAAAAGFILLSMIAIIWMFYFGSTPQAAHR 155
                 799**********9999999999999999999999999999999999999999.....6788999999999999999***********9886 PP

>> DUF2569  Protein of unknown function (DUF2569)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   7.9    0.0013       3.9      56     132 ..      70     146 ..      37     150 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0013
     DUF2569  56 eiitnialvafsilllvlffkrrksfPklyiifllanlvlalidalllspif.ekldaqairellqsvlaaaiwipYf 132
                  + ++++l +++ +++v+     ++   ++++fl a+lv+ +   +    ++ +  +++a+ +++   + a+iw  Yf
  KKY21096.1  70 WWGIVYMLGCIAGVTVVFASDSADTYSIAIVGFLAAGLVFTTSA-VNSLVYSpQGAEEAAAAGFILLSMIAIIWMFYF 146
                 3445555556666666666666667799999*********9983.3322223578899999999999999*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1887.87
//
Query:       KKY21097.1  [L=135]
Description: hypothetical protein UCRPC4_g03892 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      117  (0.00652574); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1059.85
//
Query:       KKY21098.1  [L=660]
Description: putative carbohydrate-binding wsc [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-17   61.9  15.4    4.8e-17   61.9  15.4    3.6  3  WSC            WSC domain
     0.0093   15.7   0.0       0.02   14.7   0.0    1.5  1  Abhydrolase_5  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.012   15.5   0.7      0.012   15.5   0.7    3.1  3  PAN_4          PAN domain
      0.033   14.8   1.7      0.052   14.1   1.0    1.7  1  Abhydrolase_6  Alpha/beta hydrolase family
      0.041   13.0   0.0      0.097   11.7   0.0    1.5  2  DUF1749        Protein of unknown function (DUF1749)


Domain annotation for each model (and alignments):
>> WSC  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9  15.4   1.4e-20   4.8e-17       1      81 [.     384     479 ..     384     480 .. 0.88
   2 ?   -0.7   5.4      0.47   1.7e+03      15      74 ..     499     564 ..     490     569 .. 0.67
   3 ?    0.3   2.7      0.23   8.2e+02      15      37 ..     543     565 ..     522     586 .. 0.78

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 1.4e-20
         WSC   1 ylGCyt............ds.....sesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCG 81 
                 y GCyt            ds     + sr+l+ ++ +s+++mt+e+Ca+fC+  gy+y+gle+ +eCyCgn+++a++++++ s+C+++C+G+++++CG
  KKY21098.1 384 YAGCYTdqspqslsyfayDSsdntiELSRALSATAFTSTTSMTIEACASFCT--GYTYFGLEYAQECYCGNTISAGNTNTTASDCDMTCTGNAAELCG 479
                 89****55555555555511566888899999999****************9..*******************************************9 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.47
         WSC  15 lgpssasdstmtpekCaafCkakgykyagledgseCy..Cgnslpaaavkassss....CnasCsG 74 
                 ++++s+  st tp + + +C +++ +++  ++g++    C+ +++a++  ++s++    C  +C++
  KKY21098.1 499 SSTTSTVASTATPTATTLTCPESNNTVYTASNGGQYLieCAMEYAAGDLTSTSANtfneCIDACDS 564
                 555677778888888888888887777777766643223777777777776666666777777754 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.23
         WSC  15 lgpssasdstmtpekCaafCkak 37 
                   +  +s+s++t ++C+++C ++
  KKY21098.1 543 AAGDLTSTSANTFNECIDACDST 565
                 556678899999********965 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.6e-06      0.02      53      79 ..     164     190 ..     141     199 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.6e-06
  Abhydrolase_5  53 apklekfvvgGhslGGvvasrfaaeee 79 
                    +p+l++ v++GhslG  ++ r+aa  +
     KKY21098.1 164 YPNLNQIVIAGHSLGAQMTQRYAAVGN 190
                    799*******************98654 PP

>> PAN_4  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   1.3       1.3   4.7e+03      21      36 ..     430     439 ..     419     450 .. 0.64
   2 ?   -1.5   1.6      0.69   2.5e+03       3      27 ..     449     472 ..     448     478 .. 0.79
   3 ?   15.5   0.7   3.3e-06     0.012       2      39 ..     541     576 ..     540     584 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.3
       PAN_4  21 CcaaCaadsnCnawvy 36 
                 C++       C +++y
  KKY21098.1 430 CASF------CTGYTY 439
                 4443......556666 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.69
       PAN_4   3 ypGndlangevladspeaCcaaCaa 27 
                 y Gn+++ g+  + ++++C   C  
  KKY21098.1 449 YCGNTISAGNT-NTTASDCDMTCTG 472
                 56888988744.788999*999975 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 3.3e-06
       PAN_4   2 dypGndlangevladspeaCcaaCaadsnCnawvyvkp 39 
                 +y  +dl++   +a++  +C +aC+++++C   +y   
  KKY21098.1 541 EYAAGDLTS--TSANTFNECIDACDSTTGCIDVSYLGV 576
                 688899999..699****************99999765 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.0   1.5e-05     0.052      35     135 ..     126     237 ..      53     322 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.5e-05
                    TTSTS-GGCS--HHHCHHH....HHHHCCTT...........TTSEEEEEETCHHHHHHHHHHCC..EE.EEES-.....----TTTS----TTHH CS
  Abhydrolase_6  35 pGhGrsdpppldledladl....aalldelaa.........gggpvvlvGHSlGGalalaaaplalvvg.vlldppp...talpagllaaalelll 113
                     G G +++    +++ +++     ++ld +++         + +++v+ GHSlG+ + ++   +a  vg  l ++ p    ++ +   +  + +l 
     KKY21098.1 126 QGSGWASGQNNQYPR-LQIatssYDVLDQIVKyfgnstlypNLNQIVIAGHSLGAQMTQR---YAA-VGnSLAASLPsklRVTYWVGNPNSFLWLN 216
                    233322333333333.222222233444444455558888888999**************...886.55455555443443333333444444444 PP

                    HHHHTT-C.....CCCHCCHS-HSCCC CS
  Abhydrolase_6 114 allallrl.....lawlsreplprlfl 135
                      ++l ++     + w+ +      + 
     KKY21098.1 217 SSRPLDTSscstyDDWREG------LS 237
                    4444444456555555532......22 PP

>> DUF1749  Protein of unknown function (DUF1749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.75   2.7e+03       9      45 ..      30      65 ..      22      76 .. 0.58
   2 ?   11.7   0.0   2.7e-05     0.097      87     128 ..     151     191 ..     145     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.75
     DUF1749  9 llheyaerlvafeyetsgelkskallFigGLgdGllt 45
                +l +y +++   +  t++++ ++a++ i GLg  ++t
  KKY21098.1 30 TLINYFSQDGSSKRLTTSNV-KRAIIVIHGLGRDPGT 65
                55555555555555555553.5678888888866655 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2.7e-05
     DUF1749  87 ieklveYlkktksGeekkekvvlmGHstGsqdvlyYltssne 128
                 ++++v+Y+ +  +   + +++v+ GHs G+q +  Y+  +n+
  KKY21098.1 151 LDQIVKYFGNS-TLYPNLNQIVIAGHSLGAQMTQRYAAVGNS 191
                 7899****999.4589****************9999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       853  (0.0475766); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 4328.58
//
Query:       KKY21116.1  [L=558]
Description: putative microfibrillar-associated protein 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-64  217.6  23.5    1.7e-64  217.6  23.5    3.0  3  MFAP1     Microfibril-associated/Pre-mRNA processing


Domain annotation for each model (and alignments):
>> MFAP1  Microfibril-associated/Pre-mRNA processing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   6.3     0.077   1.4e+03       2      48 ..      92     141 ..      90     149 .. 0.46
   2 !  217.6  23.5   9.8e-69   1.7e-64       1     217 []     149     393 ..     148     393 .. 0.87
   3 ?   -3.2   1.3      0.34     6e+03      34      49 ..     459     472 ..     422     502 .. 0.50

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.077
                 XXXXXXXXXXXXXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXX CS
       MFAP1   2 seeeepkrkllkPvFvpkskRetiae......keaeeeeeeeeeeeekkeeee 48 
                 +e+e ++ + ++P+ v+k+   + +       +   e+ +e+eeeee +e e 
  KKY21116.1  92 DEDE-APPPATRPLDVTKATSVARQGpreprdQ--LEAPNESEEEEEDEESED 141
                 4444.4568999999999987655555445331..222222222222222221 PP

  == domain 2  score: 217.6 bits;  conditional E-value: 9.8e-69
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX.................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......X CS
       MFAP1   1 sseeeepkrkllkPvFvpkskRetiae..............keaeeeeeeeeeeeekkeeeerkkeakklveeeirkeaeakeaedeeeeea......e 79 
                 ssee+ p+rkll+P+F++ks+R+  ++              +e+ ++  +++++   +ee++r++ a++++ ++++++a a+++++++ +++      +
  KKY21116.1 149 SSEEDVPQRKLLRPTFIKKSDRNSKTAspatatpqpqtnlqSESDTTVPAHMTDGLTEEEARRRELADMMITDKLERDALARAQGKKSWDDDeevapeD 247
                 688999999*************999888877777776655444444444455555556688899999*************999885443333345678* PP

                 XXXS-SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHX..XXXXXXXXXXXXXXXXXXXXXXX..XXXXXXX CS
       MFAP1  80 dvddtDeldpeaeyeaWklReLkRikrdreereerekekeelerrrnlteeereaedrellkkqr..ekeekgkmkfmqkYyhkGAFfqd..eeeeell 174
                 +v+dtD++dpeae +aWklReLkR+krdre++e +eke ee+errrnlt+eere+ed+e+l++q+  +++++gk++fmq+Y+hkGAFfqd   ++e l 
  KKY21116.1 248 MVNDTDGIDPEAELAAWKLRELKRLKRDREAIELHEKELEEIERRRNLTAEEREKEDAEYLAAQKeeRESGRGKAGFMQRYHHKGAFFQDeeVAKEILA 346
                 ************************************************************99999878889******************9866778888 PP

                 XXXXXXXXXXXXX.XXXXXXXXXXXXX...XXXXXXXX......... CS
       MFAP1 175 krdlsaatledkv.dkelLPkvmqvrd...fGkkgrtKYthLkdeDT 217
                 +rdl++ ++ d+v ++e+LP++mq+rd   +GkkgrtKY++Lk+eDT
  KKY21116.1 347 RRDLMGGKFVDEVqNREALPEYMQIRDmtkLGKKGRTKYKDLKAEDT 393
                 89********************************************9 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.34
                 XXXXXXXXXXXXXXXX CS
       MFAP1  34 eeeeeeeeekkeeeer 49 
                 ++ee+e+ +k   e+ 
  KKY21116.1 459 DHEEDEAPRKI--EAM 472
                 22222222222..222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1435  (0.0800379); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.36s 00:00:01.24 Elapsed: 00:00:00.49
# Mc/sec: 3445.36
//
Query:       KKY21117.1  [L=383]
Description: putative cytochrome p450 oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-52  177.1   0.0    2.1e-51  175.1   0.0    1.7  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    0.7   0.0    0.0096   1.7e+02      93     205 ..      27     135 ..       5     161 .. 0.61
   2 !  175.1   0.0   1.2e-55   2.1e-51     260     460 ..     144     347 ..     136     350 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.0096
                 HHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHH..HHHCHH CS
        p450  93 ekwkklRrfltptltsfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelss..llskss 188
                 ++ +  R+ + + + s+ +  +++++ + e+++++ ++    +++   d+++++   a  +i +i++g  ++  +++  +  + a ++l++  l   + 
  KKY21117.1  27 DRLRVYRKNIAQLIGSKTAVaRFNSVQDLETRRFLLRVL---DKP--EDLVQHIRTNAGAIILKITYGYTVEPHKQD--PLVELADRALFQfsLATVPG 118
                 666666666666666663333555555555555543332...223..477888888888889999998887744444..44555666666633444455 PP

                 HHCCCCCHHHTCCSCHH CS
        p450 189 vqllllfpllkylptkl 205
                   ++++fp+lk+lp+++
  KKY21117.1 119 AWMVDIFPFLKFLPDWF 135
                 55789999999998765 PP

  == domain 2  score: 175.1 bits;  conditional E-value: 1.2e-55
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE- CS
        p450 260 deelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylip 358
                  +e ++tv+++    ++ t s l+ +++ +  +Pevq+k + E+d+v+g +r p ++d+q+lpy++a++kE++R hp+ p+++p+  t d v++gy+ip
  KKY21117.1 144 AREWRQTVTDMADKPYEFTVSSLACFFLAMTIYPEVQRKAQAELDQVVGTDRLPGHEDRQRLPYVNAIVKEVFRWHPIGPMGIPHTSTVDDVVGGYFIP 242
                 5677888888888888999******************************************************************************** PP

                 TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEES..TSTSGGEEESSC.SSEE CS
        p450 359 kGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelq..petdpppileks.glll 454
                 kG +vi+n++++ +dpe +++P +F peRFld +g     +   + FG G+R C+G+ lA   l+l +a+ L  F+++ +  +++++ p  + + g++ 
  KKY21117.1 243 KGAMVIPNIWWITHDPETYEDPMSFEPERFLDLNGHVPELDPHAVVFGYGRRVCPGRVLADSSLFLTIAKALAVFDITKPveHGQEITPEVDFTaGIIS 341
                 ***********************************77778888899******************************98541133333333333378888 PP

                 ESSSSE CS
        p450 455 ppkpik 460
                 +p p+k
  KKY21117.1 342 HPLPFK 347
                 888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2447.55
//
Query:       KKY21118.1  [L=488]
Description: hypothetical protein UCRPC4_g03814 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0089   15.8   0.1      0.016   14.9   0.1    1.4  1  PGAP1          PGAP1-like protein
  ------ inclusion threshold ------
      0.014   16.0   1.5      0.014   16.0   1.5    1.8  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.8e-06     0.016      91     110 ..      78      97 ..      60     104 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.8e-06
       PGAP1  91 tsviliGHSmGGivaraalt 110
                   v+l+GHSmGGiv   a++
  KKY21118.1  78 VHVLLVGHSMGGIVGAEAIM 97 
                 5799**********755544 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.0   1.5   1.5e-06     0.014      17      96 ..      16     107 ..       2     184 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.5e-06
                    HHHHHHHCCT...CEEEEE--TTSTS-GGCS.......--HHH..CHHH.HHHHCCTT.........TTSE..EEEEETCHHHHHHHHHHCC..EE CS
  Abhydrolase_6  17 apLaallaag...vhvlapDlpGhGrsdppp.......ldled..ladl.aalldelaa.......gggpv..vlvGHSlGGalalaaaplalvvg 90 
                     +L+al ++    + ++a+ +p +  + +          ++    + dl +       a        ++ v   lvGHS+GG+++++   +     
     KKY21118.1  16 EHLRALVSHAlpkIDIVAVTYPKFD-TRGELkecvgrfREWLQnkVIDLeV-------ArstpsptIDPSVhvLLVGHSMGGIVGAE---AI---- 96 
                    4666666666666455788888773.2222221222222231122233332.......23333343333335599************...66.... PP

                    EEES-...... CS
  Abhydrolase_6  91 vlldp.....p 96 
                     ll++     p
     KKY21118.1  97 MLLASeqplpP 107
                    66666544431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3170.15
//
Query:       KKY21119.1  [L=588]
Description: hypothetical protein UCRPC4_g03815 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0051   16.7   0.1      0.016   15.1   0.0    1.9  2  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     9e-07     0.016      12      47 ..       2      36 ..       1      37 [. 0.90
   2 ?   -2.7   0.0      0.33     6e+03      25      34 ..     485     494 ..     483     496 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9e-07
  F-box-like 12 IFsyL.ppsdLlrlalVCrrWrrvaldtplLWrrlvl 47
                I syL +  dL+r+++++r  + ++   p L+++++l
  KKY21119.1  2 IVSYLdDVADLARVCRTSRVLNYMT--VPHLYNTITL 36
                99***6677***************9..789****987 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.33
  F-box-like  25 alVCrrWrrv 34 
                 ++VC r + +
  KKY21119.1 485 SHVCERLKYA 494
                 89**998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 3671.28
//
Query:       KKY21120.1  [L=430]
Description: putative cytochrome p450 51 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-57  194.0   0.0    4.7e-57  193.8   0.0    1.1  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.8   0.0   2.6e-61   4.7e-57      47     437 ..       4     404 ..       1     422 [. 0.87

  Alignments for each domain:
  == domain 1  score: 193.8 bits;  conditional E-value: 2.6e-61
                 EEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH.HHHHHHHHHHHHHHTSH.....STT.THHHHHHHHHHHHHHHHHCCCCHCSE CS
        p450  47 vvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang.ekwkklRrfltptltsf.....gkl.sleelveeeaedlveklrkkagesse 138
                 +v+ g +    +l+ k+++ +++    +++  + p  gkgv+++++ ek + ++r lt + + +     ++l  +++l+ ee+e  +++  + ++  + 
  KKY21120.1   4 TVVLGKKGNNFILNGKHKDLNAE---EVVRGMTVPIFGKGVIYDCPnEKLMDQKRCLTYEQLVKegfssESLrFYTPLFVEEVEGYIQTSSDFRSDTGI 99 
                 56666777778888887777774...666667789***********99999999999987776667777788888888888888888888888888878 PP

                 EETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCS CS
        p450 139 lditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsakks 237
                 ++i+ ++s+++l + ++ l g ++    d  +s++ ++ ++l    +  +  ++++fp++   p + +r+ ++a+kk++ l+  +i+err+t +++   
  KKY21120.1 100 CNIYSVMSEITLYSAARSLQGQEIR---DLLNSTFANLYRHL----DDGFAPINFMFPWA---PIPRNRRRDHAQKKMAALYLDIIRERRRTGNKD--G 186
                 8888888888888888888888744...44444555555555....888999******66...888888888899*********************..9 PP

                 SCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSC CS
        p450 238 rrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhp 336
                 + d+l  l+++   k+g+  + d e+a+ ++ ll++G++++++t +w+++eLa++P++ ++l++E  +vl++ +++ty+++++lp+ +++i+EtLR+h+
  KKY21120.1 187 TQDMLWTLMDSN-YKDGT-PVPDIEIAHLMIALLMGGQHNSAATGTWMILELAHRPHLIQELYKEQTRVLNG-DPLTYEHMSRLPLHNQIIHETLRIHS 282
                 ***********5.77777.***************************************************66.49************************ PP

                 SSTTEEEEESSSCEEETT..EEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS....................CTESSCTT--TTEEGGGS-T CS
        p450 337 vvplllpRevtkdvvirg..ylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg....................nskrksfaflPFGaGpRnCi 413
                 +++ ++ R+v+++++i++    +p+G + +  +++l r p +fp+Pe+ dp+R+ ++                      +++     +lPFGaG++ C+
  KKY21120.1 283 PIH-SILRKVKSPMQIPDtdTIVPAGHILLAAPGYLARHPHYFPDPENWDPHRWGSNASdspttppshqpsnnnltnlkDKSALTSPYLPFGAGRHRCV 380
                 ***.999***********9999*********************************99999****************9985568899************* PP

                 THHHHHHHHHHHHHHHHHHEEEEE CS
        p450 414 GerlArmelklflatlLqnFevel 437
                 Ge+ A+ +l  +latl++  e+e 
  KKY21120.1 381 GEQYAYTQLISILATLVRIMEWEQ 404
                 ******************999993 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2945.15
//
Query:       KKY21121.1  [L=721]
Description: putative ph signal transduction protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.1e-110  367.6   0.6   6.7e-110  367.2   0.6    1.1  1  PalH             PalH/RIM21
  ------ inclusion threshold ------
       0.38   10.7   2.5        1.4    8.9   0.1    2.7  2  DUF418           Protein of unknown function (DUF418)


Domain annotation for each model (and alignments):
>> PalH  PalH/RIM21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.2   0.6  7.5e-114  6.7e-110      57     329 ..      10     320 ..       2     321 .. 0.97

  Alignments for each domain:
  == domain 1  score: 367.2 bits;  conditional E-value: 7.5e-114
        PalH  57 ksdnkdsFyaSiipilfslsaicVitwmLvlllfllprkn..............................hkrplllklavllvaivltialakttkev 125
                   d++d+Fy Si p++++l+a+ V++++Lv++lf++pr++                              + rp+l+k+a++ vai+ltia+a+t+k v
  KKY21121.1  10 VDDFRDPFYTSISPQIYALAAASVVSYVLVIMLFITPRTFfvggpgggsgflsrrgfisgsygnsavtgvGRRPWLQKIAAVSVAISLTIATADTFK-V 107
                 4589***************************************************************98666*************************.* PP

        PalH 126 feeqyskgyqdaselekeivsstelkvlelisnlllnlaqvqivirlfsrqkekriiilvGlaliildtilsalllf...sk.....kfldalpalsyl 216
                 +++qy+ gy+d+s++++e+++s+e++++++is+++l+laqvq++irlf+r+kek++i+++G+ali++dt++s+l++f   ++     +f da++alsyl
  KKY21121.1 108 AQRQYNLGYSDSSAMMDEVTTSLEIRIVRVISDTFLWLAQVQTLIRLFPRHKEKVVIKWLGFALIVTDTLFSILNNFvyyTErtrprSFRDAISALSYL 206
                 *****************************************************************************7651177899************ PP

        PalH 217 felalvtlyaalviyYliskrkyilspkrmketilllilnllvillpvvffildisnadvaewkeliiwvlkllitvivWewierieklerkeekegvL 315
                 fela++++ya+++iy++i kr+y++++++m++++++++l++l++l+pvvff+ldi+++dva+w+++i+wv++++++v+vWew+erie+ler+e+k+g+L
  KKY21121.1 207 FELAIGLIYASCIIYFSIAKRRYAYFHPKMRNICIVALLSILSVLIPVVFFVLDITKPDVAGWGDYIRWVGAAAASVVVWEWVERIEALERDERKDGIL 305
                 *************************************************************************************************** PP

        PalH 316 GRkisn.ddklevdp 329
                 GR+i++ d++lev+p
  KKY21121.1 306 GREIFDgDEMLEVTP 320
                 *************98 PP

>> DUF418  Protein of unknown function (DUF418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2    0.0068        61      14      87 ..      82     167 ..      75     170 .. 0.65
   2 ?    8.9   0.1   0.00015       1.4      11      79 ..     158     227 ..     152     236 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0068
      DUF418  14 krllrrllligllvglplnllla............vlaeaaeesallelllsvlrylaglllalgyvalillllakekrrrllral 87 
                 +++l+++++++++++l ++ +                  a  ++++++l + ++r ++  +l l+ v +++ l+++ k++ ++++l
  KKY21121.1  82 RPWLQKIAAVSVAISLTIATADTfkvaqrqynlgySDSSAMMDEVTTSLEIRIVRVISDTFLWLAQVQTLIRLFPRHKEKVVIKWL 167
                 55666666666666666666555444444422221222233344555566778999999999999999999999999999988887 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00015
      DUF418  11 eehkrllrrllligllvglplnllla.vlaeaaeesallelllsvlrylaglllalgyvalillllakek 79 
                 +++k ++++l +++++   ++++l   v++++ ++ +    ++s+l+yl++l+++l+y+++i+++   ++
  KKY21121.1 158 HKEKVVIKWLGFALIVTDTLFSILNNfVYYTERTRPRSFRDAISALSYLFELAIGLIYASCIIYFSIAKR 227
                 4555666666666667777777777789999999999999**********************99865555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 4734.01
//
Query:       KKY21122.1  [L=1612]
Description: putative uv radiation resistance protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-16   59.2   1.1    7.8e-16   58.0   0.4    1.9  2  Atg14      Vacuolar sorting 38 and autophagy-related subunit 
    3.8e-12   45.8   1.4    1.9e-05   23.8   0.0    3.1  3  VPS38      Vacuolar protein sorting 38
    4.3e-07   29.9  14.5    8.4e-07   29.0  14.5    1.5  1  Zn_clus    Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
       0.21   11.2   0.1       0.43   10.2   0.1    1.4  1  Rota_NSP4  Rotavirus non structural protein


Domain annotation for each model (and alignments):
>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.4   1.7e-19   7.8e-16      37     305 ..     259     514 ..     241     529 .. 0.72
   2 ?   -3.2   0.0      0.79   3.5e+03     198     223 ..     952    1012 ..     947    1015 .. 0.83

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 1.7e-19
       Atg14  37 ekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqiak 135
                 + + l + i++al+++ee e++ ++i ++k    e + ++a+ ++ l+++  + + +++++++ +k    ++++l  Rrs   s+  e +er    +++
  KKY21122.1 259 RLANLDECIQDALTTREEIESQMNAILKEKHTDVEAQRDVARAEDTLHQMVRTATAQRRQLRNEQKAKDDMRKSLDARRSA-MSVAREEQERTIPRLSQ 356
                 555666667777777774433333333333344444445555555555555555555555555555555555566577776.55666667777888899 PP

       Atg14 136 lqdaikrieqklsslssktlesrsslcselaklyglrrtsyergkwvfskngeseesytIggiplpdlrdlnafpaeeI.sasLsyiaqLlaLvshyLs 233
                 l dai+ ++  l+++s  ++ + +  c+ l  + ++                +   +++I g+plp+ +++  +  ++I +a+L+++++L++L+s+yLs
  KKY21122.1 357 LEDAIHATTSHLTKISERSAGQIRRVCEDLQTILPIES------------IPNRPLQFSIRGLPLPN-SKFDDIDDRDIvAAALGFTCHLVSLLSQYLS 442
                 99999999999999999999999999999999999999............56889***********7.567778777763789**************** PP

       Atg14 234 irLPaeltlphscqpi....rplfiekslpkls.....peteseflegvalLayniawLcrtqgvnsleleptqldtlenl 305
                 ++LP++++   s + i    +       lp+        +    f  +v lL+++i +L+ +  +n++ l++   +tl nl
  KKY21122.1 443 VPLPYPIQHLASTSLIedpiS-----VGLPQRIyplypINVSYRFEYAVFLLNKDIEFLMNR--YNLRMLDIR--HTLPNL 514
                 ********9999996644441.....223332245556899999****************99..555558888..888887 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.79
       Atg14  198 iplpdlrdlna...................................fpaeeIsasLsyiaq 223 
                  ++lpd rd++                                    f +++I asL ++ q
  KKY21122.1  952 VALPDYRDPSThlqllvdepilavtmlsiasrhmklqgagsasrdfFVHDRIYASLANMLQ 1012
                  6788888888888888888888888888888888888899999999999*********998 PP

>> VPS38  Vacuolar protein sorting 38
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0   0.00061       2.7       7      27 ..      27      47 ..      20      62 .. 0.80
   2 !   23.8   0.0   4.2e-09   1.9e-05      90     282 ..     164     362 ..     131     381 .. 0.81
   3 !   12.5   0.1   1.1e-05     0.048     342     395 ..     417     469 ..     400     498 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00061
                XXXXXXXXXXXXX----EEEE CS
       VPS38  7 krrlRHvrsisinNvsllkke 27
                +rr+RH++ isi+N+ ++ +e
  KKY21122.1 27 NRRVRHLHGISIRNLDVTTQE 47
                7**************999877 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 4.2e-09
                 -----------------EEEEEE--TTS--TT--EEEEEEE...ESSSEEEEEEEE------..------------------------------HHHHH CS
       VPS38  90 kipsellkeeekkeeWcvlatykidLnkLkkidedddlies...lNvPvleliDgiytlpev..klkklkestkshkrkisevkikksfsFnslLKLnk 183
                 k+  +l ++++ +e ++ + t  + L +L++i +  d  +     N  +++++Dgiyt  +   ++ +     +s ++++ +v  +  +sF++l++L  
  KKY21122.1 164 KVTVKLWAKSSGSERYLLVLTLDLSLRSLQYIGKTLDNFHHplpANCVLFHMSDGIYTSFTDlpPIEHPIALLESGQARNTSVGEQFTASFDALMRLAN 262
                 556667777777888999**************7666666655779************96543113444566777777788889999************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHH--S-THHHHHHHHHHHHHHHHHHHH CS
       VPS38 184 lleYtsqveeElqeisekveelikseekkelwslkelqkaieqlkksiekkklklkrLessleee..nskteessesqeeslnddYgntyseliqiknr 280
                 l e  ++     +ei +++++ +k++ + ++   + +++a ++l++ +++ +++ ++L+++++++    k+  + +s ++  +++   t ++l+q  + 
  KKY21122.1 263 LDECIQDALTTREEIESQMNAILKEK-HTDVEAQRDVARAEDTLHQMVRTATAQRRQLRNEQKAKddMRKSLDARRSAMSVAREEQERTIPRLSQLEDA 360
                 *******************9998865.667777999************************999874334444556667777788899999999988887 PP

                 HH CS
       VPS38 281 le 282
                 ++
  KKY21122.1 361 IH 362
                 76 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 1.1e-05
                 HHHTTTHHHHHHTTHHHHHHHHHHHHT---SS-EE--SSS-EETTTEES--SS- CS
       VPS38 342 eedkelinsmLGYYlLFvkliatkiykipLPyklmYyGstsvidgkypLylpes 395
                  +d+ ++ + LG+    v+l+++   ++pLPy +++  sts+i+  +   lp+ 
  KKY21122.1 417 IDDRDIVAAALGFTCHLVSLLSQ-YLSVPLPYPIQHLASTSLIEDPISVGLPQR 469
                 57999***************986.579****************98777666654 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0  14.5   1.9e-10   8.4e-07       1      39 [.     689     733 ..     689     734 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.9e-10
                 SS-HHHHHCT---ST...SSSS...-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus   1 haCdnCrkkKvKCda...kkPa...CsnCkklnleCtfysesskr 39 
                 +aCd Crk+KvKCd    ++P+   C++Ck+ + +C f + ++kr
  KKY21122.1 689 QACDACRKRKVKCDLgsvDNPEdppCARCKRERRPCNFSETRRKR 733
                 69****************7777788************77776665 PP

>> Rota_NSP4  Rotavirus non structural protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   9.5e-05      0.43      74     113 ..     252     295 ..     233     335 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9.5e-05
   Rota_NSP4  74 tifntllklagykeqi....ttkdeiekqmdrvvkemrrqlemi 113
                 + f++l++la   e i    tt++eie qm+ ++ke + ++e  
  KKY21122.1 252 ASFDALMRLANLDECIqdalTTREEIESQMNAILKEKHTDVEAQ 295
                 569999999988765433339***************99988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1195  (0.0666518); expected 358.6 (0.02)
Passed bias filter:                      622  (0.0346924); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.14u 0.37s 00:00:01.50 Elapsed: 00:00:00.57
# Mc/sec: 8527.90
//
Query:       KKY21123.1  [L=380]
Description: hypothetical protein UCRPC4_g03819 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-26   92.2   0.0    2.8e-26   91.4   0.0    1.4  1  Mhr1         Transcriptional regulation of mitochondrial reco
  ------ inclusion threshold ------
      0.066   12.7   0.2       0.11   12.0   0.2    1.3  1  Herpes_UL56  Herpesvirus UL56 protein


Domain annotation for each model (and alignments):
>> Mhr1  Transcriptional regulation of mitochondrial recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.0   3.1e-30   2.8e-26       1      83 [.      63     145 ..      63     147 .. 0.97

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 3.1e-30
        Mhr1   1 geqiyvfrnletgqVvYSltrvleknkalkqlpfvgkkqvpaklRkDlWkplavvefpkgeagvsvyqkLrelrklrelewek 83 
                 g+ +++++nl+t+qVvYSltr le +k+l ql ++gkk+vp++lRkD+W+p+++++fp++++g+++y+ Lrel   r+l+++k
  KKY21123.1  63 GQTVFAYSNLRTNQVVYSLTRFLEDTKILPQLLYHGKKTVPSNLRKDHWTPYFSIHFPTSKHGLTAYRYLRELSAIRQLDPPK 145
                 689***************************************************************************99877 PP

>> Herpes_UL56  Herpesvirus UL56 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   1.2e-05      0.11      56      99 ..      11      55 ..       2      72 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.2e-05
  Herpes_UL56 56 tllvvlvs.passgegevsergrsrraaqraarrarrraerrarr 99
                 + +++lv+ pa+   g+v  +g+ r  a +aar  r r e+ra++
   KKY21123.1 11 PHPMTLVPkPATIPRGKVWVQGKLRDKASKAARNQRLREEQRAEK 55
                 45677775589999**************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 2381.09
//
Query:       KKY21124.1  [L=936]
Description: putative subunit of dna polymerase ii [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-41  140.0   0.2      4e-22   77.9   0.1    3.4  3  PTCB-BRCT  twin BRCT domain
    1.3e-27   96.0   0.2    1.1e-10   41.7   0.1    4.3  4  BRCT       BRCA1 C Terminus (BRCT) domain
      2e-16   60.1   0.0    3.6e-05   24.1   0.0    4.4  4  BRCT_2     BRCT domain, a BRCA1 C-terminus domain
    5.5e-08   33.0   0.8       0.19   12.1   0.0    4.7  4  LIG3_BRCT  DNA ligase 3 BRCT domain
    7.1e-07   29.2   0.6      0.027   14.5   0.0    4.6  5  BRCT_3     BRCA1 C Terminus (BRCT) domain


Domain annotation for each model (and alignments):
>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   2.1e-09   7.6e-06      22      63 .]       4      47 ..       1      47 [. 0.95
   2 !   77.9   0.1   1.1e-25     4e-22       2      63 .]      79     141 ..      78     141 .. 0.98
   3 !   32.6   0.0   1.6e-11   5.6e-08       1      63 []     384     448 ..     384     448 .. 0.96

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 2.1e-09
                HTT-EEESSEETT-SEEEECSS-CHHHHH.HHHCT.-EEE-CHH CS
   PTCB-BRCT 22 amGaeyskdltksvTHLicksgeGekyek.Akkwg.ipvVsveW 63
                +mGae + dlt +vTHLi+ +    ky++ A+++  ++v ++eW
  KKY21124.1  4 EMGAEHKLDLTSDVTHLIVGNIDTPKYKYvAREREdVKVLRPEW 47
                8**************************955************** PP

  == domain 2  score: 77.9 bits;  conditional E-value: 1.1e-25
                 EEEEECB-TTC.HHHHHHHHHHTT-EEESSEETT-SEEEECSS-CHHHHHHHHCT-EEE-CHH CS
   PTCB-BRCT   2 vicvtgysgdd.rkslqklieamGaeyskdltksvTHLicksgeGekyekAkkwgipvVsveW 63 
                  ic+tg+++ + r++l ++i+  G+ey++dltks+THLi++++eG+ky++A++wgi++V ++W
  KKY21124.1  79 AICLTGFDDLKfRTQLAEQITFYGGEYRGDLTKSITHLIAYTAEGKKYHYAQQWGIKIVGLKW 141
                 69************************************************************* PP

  == domain 3  score: 32.6 bits;  conditional E-value: 1.6e-11
                 -EEEEECB-TTCHHHHHHHHHHTT-EEESSEETT-SEEEE..CSS-CHHHHHHHHCT-EEE-CHH CS
   PTCB-BRCT   1 lvicvtgysgddrkslqklieamGaeyskdltksvTHLic..ksgeGekyekAkkwgipvVsveW 63 
                 l+i  t ++g +r ++ k ++ +Ga+y + ++  v  L++  ks++ e  ++A +w+ipvV+++W
  KKY21124.1 384 LTINSTAFEGIERLHVSKVVKTLGATYDEYFKPGVSILVSnsKSPSEERLRHAAEWNIPVVTAQW 448
                 5788899*********************************88999******************** PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.7e-05     0.062      39      76 ..      12      49 ..       4      51 .. 0.89
   2 !   41.7   0.1   3.1e-14   1.1e-10       4      79 .]      73     146 ..      71     146 .. 0.97
   3 ?    0.0   0.0      0.32   1.1e+03       6      37 ..     277     312 ..     272     356 .. 0.74
   4 !   34.5   0.0   5.6e-12     2e-08       6      79 .]     381     453 ..     380     453 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.7e-05
                SCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEETHHHH CS
        BRCT 39 evskktthlvvgepesrslkylealklnipivheewll 76
                ++++++thl+vg+ ++ + ky +  +  ++++++ew+ 
  KKY21124.1 12 DLTSDVTHLIVGNIDTPKYKYVAREREDVKVLRPEWVE 49
                799*********************************96 PP

  == domain 2  score: 41.7 bits;  conditional E-value: 3.1e-14
                 TTTTTEEEEEEESTSSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEETHHHHHHH CS
        BRCT   4 llfhgckfvitgvldnftrdeleelikehGGkvttevskktthlvvgepesrslkylealklnipivheewlldci 79 
                 ++fh + +++tg  d   r++l e i  +GG + ++++k +thl++ +   +++ky  a++++i+iv  +w++d++
  KKY21124.1  73 PIFHELAICLTGFDDLKFRTQLAEQITFYGGEYRGDLTKSITHLIAYTA--EGKKYHYAQQWGIKIVGLKWFKDSL 146
                 79********************************************999..***********************96 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.32
                 TTTEEEEEEESTSSHHHHHHHHHHHHTTCEE.....E CS
        BRCT   6 fhgckfvitgvldnftrdeleelikehGGkv.....t 37 
                 ++  +f++  ++++ + + l++ ++ + ++v      
  KKY21124.1 277 LQSTIFAL-HGFNSQQISILRQHLQANDATVvdsewE 312
                 56667888.9999999999999999999999544441 PP

  == domain 4  score: 34.5 bits;  conditional E-value: 5.6e-12
                 TTTEEEEEEESTSSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEETHHHHHHH CS
        BRCT   6 fhgckfvitgvldnftrdeleelikehGGkvttevskktthlvvgepesrslkylealklnipivheewlldci 79 
                 f+++++   + +++++r    +++k +G+++ +++++ +++lv  +     +++ +a ++nip+v+ +wl++c+
  KKY21124.1 381 FSQLTINS-TAFEGIERLHVSKVVKTLGATYDEYFKPGVSILVSNSKSPSEERLRHAAEWNIPVVTAQWLWACV 453
                 55666666.789999****************************8888667789********************5 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.066   2.4e+02      33      70 ..       7      49 ..       3      53 .. 0.82
   2 !   19.3   0.0   3.2e-07    0.0011      18      84 ..      87     157 ..      73     158 .. 0.87
   3 !    8.6   0.0   0.00066       2.4      16      80 ..     287     363 ..     273     366 .. 0.87
   4 !   24.1   0.0     1e-08   3.6e-05      18      84 ..     393     464 ..     386     465 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.066
      BRCT_2 33 Gevvetitsavyiviaesneee.....laekrkrrvvspkyIk 70
                 e + + ts+v+++i+ + ++      ++e+++ +v++p++++
  KKY21124.1  7 AEHKLDLTSDVTHLIVGNIDTPkykyvAREREDVKVLRPEWVE 49
                5555566888999999998888999999999**********98 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 3.2e-07
      BRCT_2  18 s.psreklkklIeknGGevvetitsavyiviaesneee...laekrkrrvvspkyIkdCikkgkllpleny 84 
                 + + r +l+++I+ +GGe   + t++ +++ia + e +    a++ + ++v  k+ kd++++g +l+  +y
  KKY21124.1  87 DlKFRTQLAEQITFYGGEYRGDLTKSITHLIAYTAEGKkyhYAQQWGIKIVGLKWFKDSLERGMVLDEADY 157
                 557799*************999999988888888877799999************************9998 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00066
      BRCT_2  16 epspsreklkklIeknGGevveti......tsavyiviaesneee......laekrkrrvvspkyIkdCikkgkllp 80 
                 + s++++ l++  ++n+ +vv+++      +s+  i+++++ ++       +       vv+  +++ C+ +++ll 
  KKY21124.1 287 FNSQQISILRQHLQANDATVVDSEwefsadESTRNILLVPYDCSRdhlpsvDGLASPVSVVTNLWLEKCLMNKQLLQ 363
                 567788999***********99999999886678899999999999***9988899999****************96 PP

  == domain 4  score: 24.1 bits;  conditional E-value: 1e-08
      BRCT_2  18 spsreklkklIeknGGevvetitsavyiviaesneee.....laekrkrrvvspkyIkdCikkgkllpleny 84 
                 + +r ++ k++++ G +  e  ++ v i++++s++ +     +a + + +vv+++++ +C+++gkl+p ++y
  KKY21124.1 393 GIERLHVSKVVKTLGATYDEYFKPGVSILVSNSKSPSeerlrHAAEWNIPVVTAQWLWACVRSGKLQPWKPY 464
                 568899999*************99999999999988899**999**************************99 PP

>> LIG3_BRCT  DNA ligase 3 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.019        68      40      73 ..      14      49 ..       8      54 .. 0.87
   2 !    9.7   0.0   0.00028         1      16      78 ..      87     148 ..      73     151 .. 0.78
   3 ?    1.6   0.0     0.094   3.4e+02      18      40 ..     290     312 ..     275     361 .. 0.61
   4 !   12.1   0.0   5.2e-05      0.19      53      79 ..     430     456 ..     407     458 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.019
   LIG3_BRCT 40 ekeaTHvvvskke..eskkekeksknakaVtaewiw 73
                ++++TH +v + +  + k  +++ +++k+  +ew+ 
  KKY21124.1 14 TSDVTHLIVGNIDtpKYKYVAREREDVKVLRPEWVE 49
                568******9988889999999************96 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00028
   LIG3_BRCT  16 svedykklrRYfiAydGdlvkeekekeaTHvvvskkeeskkekeksknakaVtaewiwesIkk 78 
                 +++ +++l   ++ y+G+ +  + +k++TH ++   e +k + +++ + k V  +w+++s ++
  KKY21124.1  87 DLKFRTQLAEQITFYGGE-YRGDLTKSITHLIAYTAEGKKYHYAQQWGIKIVGLKWFKDSLER 148
                 566666777778888886.5568999********8888888889999*************876 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.094
   LIG3_BRCT  18 edykklrRYfiAydGdlvkeeke 40 
                 ++ + lr+++ A+d+++v++e e
  KKY21124.1 290 QQISILRQHLQANDATVVDSEWE 312
                 56677888888999988887644 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 5.2e-05
   LIG3_BRCT  53 eskkekeksknakaVtaewiwesIkkr 79 
                 e++ + + + n  +Vta+w+w++++ +
  KKY21124.1 430 EERLRHAAEWNIPVVTAQWLWACVRSG 456
                 5666677788999***********986 PP

>> BRCT_3  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.32   1.2e+03      44      78 ..      14      48 ..       4      64 .. 0.82
   2 ?    1.4   0.0     0.093   3.3e+02      62      88 ..     126     152 ..      74     156 .. 0.86
   3 ?   -2.0   0.0       1.1   3.8e+03      18      59 ..     211     256 ..     206     264 .. 0.65
   4 !    6.3   0.0    0.0028       9.9      18      91 ..     292     365 ..     276     368 .. 0.71
   5 !   14.5   0.0   7.6e-06     0.027      31      87 ..     401     458 ..     384     463 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.32
      BRCT_3 44 slgkldvvvtdsscpeevlkkaeqlkipvvSteWv 78
                + +++ ++v + + p+      e+ +++v+  eWv
  KKY21124.1 14 TSDVTHLIVGNIDTPKYKYVAREREDVKVLRPEWV 48
                5677788999999999999999999*********8 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.093
      BRCT_3  62 lkkaeqlkipvvSteWviQsLIegevl 88 
                  + a+q +i++v  +W   sL +g vl
  KKY21124.1 126 YHYAQQWGIKIVGLKWFKDSLERGMVL 152
                 5789************99998777665 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.1
      BRCT_3  18 eelWseilklaGaavvkkekseaee.....islgkldvvvtdsscpe 59 
                 e+lW++i+   + +  ++ ++ +++     + l++ + +vtd++ pe
  KKY21124.1 211 ESLWEDIVGSRETKNRDNLQHSKSMsnikpVILEA-KSFVTDTTEPE 256
                 67899999888888876666666554555432333.56677777665 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0028
      BRCT_3  18 eelWseilklaGaavvkkekseaeeislgkldvvvtdsscpeevlkkaeqlk..ipvvSteWviQsLIegevlkyd 91 
                  ++ ++ l++  a+vv++e + + +  +++ ++++   +c+++ l  ++ l   + vv+  W+ ++L+++++l++ 
  KKY21124.1 292 ISILRQHLQANDATVVDSEWEFSAD--ESTRNILLVPYDCSRDHLPSVDGLAspVSVVTNLWLEKCLMNKQLLQPG 365
                 5556666677777777776665544..455578888889999999888866522779**************99876 PP

  == domain 5  score: 14.5 bits;  conditional E-value: 7.6e-06
      BRCT_3  31 avvkkekseaeeislgkldvvvtdsscp.eevlkkaeqlkipvvSteWviQsLIegev 87 
                 +vvk+  ++ +e     ++++v++s+ p ee l  a++ +ipvv+ +W+  ++ +g++
  KKY21124.1 401 KVVKTLGATYDEYFKPGVSILVSNSKSPsEERLRHAAEWNIPVVTAQWLWACVRSGKL 458
                 66777777777766777899***999651667899****************9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (936 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       971  (0.0541581); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.48
# Mc/sec: 5907.48
//
Query:       KKY21125.1  [L=492]
Description: putative snf7 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-20   71.7  12.8    5.2e-20   71.7  12.8    1.6  1  Snf7        Snf7
     0.0032   17.1   2.9     0.0032   17.1   2.9    3.3  4  PspA_IM30   PspA/IM30 family


Domain annotation for each model (and alignments):
>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7  12.8   5.8e-24   5.2e-20       3     163 ..     264     425 ..     262     445 .. 0.91

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 5.8e-24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
        Snf7   3 irsLrkaerkldkkqeslekkikkleaelkklakkgnkdralllLKqkkryekqldqldnqlanleqvslaienlksnkevlnamkqgakamkamnkkv 101
                 i sL+  + +l+ +   l +k+  l + +++  k gn+  a+++L+ +k +e+  +q +++l +le+v   ie++ ++ ev+  m+ +a+++k  nk++
  KKY21125.1 264 IASLKLLISNLSIQCAALSDKVTSLSSTARQAVKNGNRVSAQQALRSRKLAESTFSQRSATLHQLEEVYSNIEQAVDQVEVISVMEASASTLKGLNKQI 362
                 67788888899999999********************************************************************************** PP

                 C.CHHHHHHHHHHHHHHHHHTCHHHHHHHHHTT-GGTTHHHHHHHHHHHHHHHHHCSH.HHHH CS
        Snf7 102 d.idkidklmdeiedqmekaeeisEalsrslddadeedEeeleaeLdaLeqelgdeelldesv 163
                   ++ ++++ ++++ +m k +ei  +++++l+d + +dE+el++eL+a+e+e +d+e  +e++
  KKY21125.1 363 GgVERVEDIIEDLRVEMGKVDEIGHVINEPLTDQAVIDEDELDNELEAMEKEQKDQERNQEEA 425
                 549*************************************************99999663322 PP

>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2       0.1   9.2e+02      65      89 ..      40      80 ..      38      81 .. 0.89
   2 ?   -2.7   0.0       0.4   3.5e+03      83     157 ..     160     176 ..     157     199 .. 0.52
   3 !   17.1   2.9   3.6e-07    0.0032      60     158 ..     278     375 ..     259     383 .. 0.87
   4 !    3.9   9.0    0.0039        35     123     199 ..     403     479 ..     396     491 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.1
   PspA_IM30 65 eqakklekkAkaALtkg................eeeLArea 89
                + +++++     AL++g                +e+L+re+
  KKY21125.1 40 ANVAAWQTALSHALKAGaiestngsndvlvlqtNENLIREL 80
                567899999999999999999999999999999****9995 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.4
   PspA_IM30  83 eeLArealaeikslekqaealetqlaqqrsaveqlrkqlealetkieelkakkellkarekaakaqeavqkslgk 157
                 e+ A+++l e+++  +                                                          +
  KKY21125.1 160 EDIAAKVLSEMQKRSS----------------------------------------------------------G 176
                 5555555555554333..........................................................3 PP

  == domain 3  score: 17.1 bits;  conditional E-value: 3.6e-07
   PspA_IM30  60 leeqkeqakklekkAkaALtkgeeeLArealaeikslekqaealetqlaqqrsaveqlrkqlealetkieelkakkellkarekaakaqeavqkslgkl 158
                  ++ ++++ +l + A++A ++g+   A+ al+++k +e++  + ++ l q+++   ++++++++ e +i+ ++a   +lk   k++   e v+  ++ l
  KKY21125.1 278 CAALSDKVTSLSSTARQAVKNGNRVSAQQALRSRKLAESTFSQRSATLHQLEEVYSNIEQAVDQVE-VISVMEASASTLKGLNKQIGGVERVEDIIEDL 375
                 5677889999******************************************************99.59999999999988888877777777766655 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.0039
   PspA_IM30 123 aletkieelkakkellkarekaakaqeavqkslgkls.tesatdslerieeKieerearadaaaelaesaqdldakle 199
                 +l+  +e+++++++    +++ a+ +ea++++l+++  +++ ++++ ri++  +e     +aa+ l + ++d++++++
  KKY21125.1 403 ELDNELEAMEKEQKDQERNQEEAREAEAMKERLEEAGrVPTDMEKFTRISTESAEQDMD-KAANRLSGMSLDEEKESK 479
                 6889999*****************************99************988876554.455555546666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2074  (0.115679); expected 358.6 (0.02)
Passed bias filter:                      747  (0.0416643); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 3430.63
//
Query:       KKY21126.1  [L=584]
Description: putative transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-07   31.6   0.0    2.7e-07   30.9   0.0    1.3  1  vWA-TerF-like  vWA found in TerF C terminus


Domain annotation for each model (and alignments):
>> vWA-TerF-like  vWA found in TerF C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   1.5e-11   2.7e-07       3     171 ..     282     466 ..     280     472 .. 0.72

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1.5e-11
  vWA-TerF-like   3 rVvlVlDasgSmsklykkgvvqa...vverllavaaqlDddgelevwlfaskakrlpdvtladleeyvkeeeegllelkklggvneeapvle.evl 94 
                     V+l +D sgSm  + +   + +   +++r++  a+ +Dddg ++v +++s+ +  +  + a++++ +++   + + l+ +g+    ++v++  v+
     KKY21126.1 282 DVILYIDDSGSMAFEENGERIDDlklILQRVAFAASLFDDDG-IQVRFMNSNEQGNHIRSDAEVQGLMQRI--QFKGLTPMGT-QLRQKVIDpLVV 373
                    699*********999888877652225777777777778887.8999998888888878889999999765..4557888998.556666661677 PP

  vWA-TerF-like  95 ekvrkepaelptlvlFitDGgvkkk..keiekalreaske..........piFwqFvglgkse..ygvLeklDdl..egRvvDNagFfavddi 171
                    + +r+ + ++p+lv+ itDG+ + +   ++ +++r as+e          +i +qF  +g+     ++L klD+    g  vD +  f+v++ 
     KKY21126.1 374 QPARSGALRKPVLVITITDGQPAGEpqGAVFDTIRYASDElarnprygkgAISFQFAQVGNDLkaREFLGKLDEEpgIGELVDCTSNFEVEQD 466
                    888889999***********9987644566677776664333333333335889998888765558899999988334578888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.47
# Mc/sec: 3730.40
//
Query:       KKY21127.1  [L=296]
Description: putative defective in cullin neddylation protein 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-27   96.8   1.9    8.4e-27   94.0   1.9    2.0  1  Cullin_binding  Cullin binding


Domain annotation for each model (and alignments):
>> Cullin_binding  Cullin binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   1.9   4.7e-31   8.4e-27       2     120 .]     144     281 ..     143     281 .. 0.84

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 4.7e-31
  Cullin_binding   2 lkkkleklrkel.sdkekfkkvYeftFelakeegqksldletaielwklllkekea......tkkeelleqwieFleeekkekkaiskDtWnqll 89 
                     ++++ ++lr+ + +d+ +f+k+Y++tF++++ egq++++ e+a+e+w+l+++ ++          +++l++wie+ e +  +k+ ++kD+Wn++ 
      KKY21127.1 144 QEAYAKQLRSAIqTDEGTFRKIYRYTFNICRPEGQRNVPAEVATEMWRLFFSPENGgidiksDSGTPWLDWWIEYYEAK--VKRPVNKDLWNMFG 236
                     5678899*****666678*********************************8763366666666679*********666..89************ PP

  Cullin_binding  90 eFakkvke..............dedlskYdeegAWPvliDeFvey 120
                     e + k++e              ++ + +++eegAWP ++DeFve+
      KKY21127.1 237 EMVFKIQEeeakgvtttdgngyKAGFGWWSEEGAWPGAVDEFVEW 281
                     **99998776666655544333356899****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1909.81
//
Query:       KKY21128.1  [L=324]
Description: putative glutamyl-trna amidotransferase subunit a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-08   34.0   0.1    3.1e-08   33.4   0.0    1.4  1  PEX11     Peroxisomal biogenesis factor 11 (PEX11)


Domain annotation for each model (and alignments):
>> PEX11  Peroxisomal biogenesis factor 11 (PEX11)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   1.7e-12   3.1e-08      47     213 ..     113     306 ..      86     316 .. 0.73

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 1.7e-12
       PEX11  47 klesqfslsRKllRlgkflehlqaaaklldnkle...dpvlrllavlrnlgyalYlllDhvlwlkklgllkvknak.....klsrlssrfwlfglvlsl 137
                 +l s +   R +lRl+   +    +++ll + ++   dp++ ++++++ l+y l+ +l++v  l++ ++l+ k+ +      ++ +ssrfw +gl++  
  KKY21128.1 113 DLTSLIVDLRITLRLFSLPTYYTWVRSLLLTPPSttpDPLTHYINLVQSLSYLLFQILENVAHLHDKKILTIKSPRlrgstEVWLWSSRFWTLGLACEF 211
                 5555566666666766655555555555442222346*********************************999988889999***************** PP

       PEX11 138 vrdlyelrllqekekklkkek..kekeereeek.............laavlkkrpallld.lvknllDllialnel...gilklsdgvvGlaGli 213
                 +r ++e  l+++  +     +  k+++++++++             ++a ++++++++ + l + ++ + ia++     gi  l+ g +G++Gl+
  KKY21128.1 212 ARLTREAILSNNNNNYYYYYNrqKQQQPSSPKTssspanisisdiiINADQAQKTKRWYQeLQTAACWFPIAVHYSlenGIKGLNGGAIGVLGLL 306
                 *****988887776654333233333333333356677799999996666666666666515556667778888767888889999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 1967.62
//
Query:       KKY21129.1  [L=367]
Description: hypothetical protein UCRPC4_g03825 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2618.68
//
Query:       KKY21130.1  [L=242]
Description: putative integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-13   48.5   2.7    8.3e-12   45.2   1.3    2.2  2  Mpv17_PMP22    Mpv17 / PMP22 family
  ------ inclusion threshold ------
      0.023   14.4   0.0      0.054   13.2   0.0    1.6  1  NADH_oxidored  MNLL subunit


Domain annotation for each model (and alignments):
>> Mpv17_PMP22  Mpv17 / PMP22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.017   1.5e+02      13      35 ..     119     141 ..     112     151 .. 0.83
   2 !   45.2   1.3   9.3e-16   8.3e-12       5      61 ..     153     209 ..     148     210 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.017
  Mpv17_PMP22  13 eelkekfwptlkanwkvWppaql 35 
                  + lk+k +++l++n+++ p+ ++
   KKY21130.1 119 TSLKAKVLQILVSNLVISPIQNA 141
                  679*************9998554 PP

  == domain 2  score: 45.2 bits;  conditional E-value: 9.3e-16
  Mpv17_PMP22   5 gksleeikeelkekfwptlkanwkvWppaqlinFyfvPlkfRvlfvnvvslgWntyL 61 
                   ++++++++++++ f+p++k++w   p+a ++  +f+P + +v+f+n+++++ +ty+
   KKY21130.1 153 ARTWHQVRATIRAGFMPVMKVSWITSPIALAFAQKFLPEQTWVPFFNIIGFVIGTYI 209
                  589*****************************************************7 PP

>> NADH_oxidored  MNLL subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     6e-06     0.054      10      41 ..     192     224 ..     186     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6e-06
                    CHCCCCHHHHHHHHHHHHHHH.HHHHHGGGTTT CS
  NADH_oxidored  10 dhwvhvlvPlGFvvGwyLDkk.edekltaFrnK 41 
                    + wv  +  +GFv+G y+  + + ++l+a r K
     KKY21130.1 192 QTWVPFFNIIGFVIGTYINTHtKKKRLAALRRK 224
                    679999999*********976156789999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1676.57
//
Query:       KKY21131.1  [L=162]
Description: putative mitochondrial import receptor subunit tom22 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-41  139.7   0.1      6e-41  139.5   0.1    1.0  1  Tom22     Mitochondrial import receptor subunit Tom22


Domain annotation for each model (and alignments):
>> Tom22  Mitochondrial import receptor subunit Tom22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.5   0.1   3.3e-45     6e-41       1     137 [.       1     138 [.       1     139 [. 0.91

  Alignments for each domain:
  == domain 1  score: 139.5 bits;  conditional E-value: 3.3e-45
       Tom22   1 mVkltevedeefqeeqegee.eelaeededeadetdsdseissdedddfdvedEtlldRivALkDiippttRksissavstttslvkstlsfsGkllWv 98 
                 mVkl+evede+f+e+ e+++ ++l  +d+d++d+td+dseis+ +  +   ++Et++dRi+AL+Di+pp+tR++i s vst+ s++k t+sf++k++Wv
  KKY21131.1   1 MVKLQEVEDEHFTEKPESSKdNALLLSDDDDDDYTDTDSEISDVSSPEELQSHETIFDRIYALRDIVPPRTRSKINSGVSTLGSYAKGTWSFTSKSVWV 99 
                 9***********9988888886666677777889********6655444448*********************************************** PP

       Tom22  99 vttSaLLlGvPlaLaieeEqqlvemEkemklqksanell 137
                 ++t++++ GvP+ La+++E++l e+E+e+ + +++ +++
  KKY21131.1 100 LSTTMIFWGVPYGLALLQETELLEQEREQGMLREGGNMM 138
                 *****************************9999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1175.03
//
Query:       KKY21132.1  [L=434]
Description: putative mitochondrial protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-84  285.1   2.8    6.8e-84  282.4   2.8    2.2  1  MDM10     Mitochondrial distribution and morphology protein 1


Domain annotation for each model (and alignments):
>> MDM10  Mitochondrial distribution and morphology protein 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.4   2.8   3.8e-88   6.8e-84      83     465 .]       3     434 .]       1     434 [] 0.79

  Alignments for each domain:
  == domain 1  score: 282.4 bits;  conditional E-value: 3.8e-88
       MDM10  83 lvsqsesipLqdlvrgYrqiepllaaelkekeakeeakekkkkksLlygrlylPs.saLeAlvikrlspttqlqlkavssqk.....lenggtllallq 175
                 ++s++ sipL++lv gYrq+e +    +  + +++ +   ++k++Ll ++l+lPs s L++l+++r sp+t + l++ s ++      ++ +tlla++ 
  KKY21132.1   3 VPSETLSIPLRTLVPGYRQLELP----RPPSAHSRWDIPLDRKDTLLNATLHLPSpSRLTGLYLRRTSPETLVRLSLNSLRAgtqtsNPPPATLLAHVT 97 
                 578899**************986....5667788899999************************************999888888878899******** PP

       MDM10 176 kdtgkysqellvstdeaLlGlrglynfGgdaekkka.sekasklnsslanns..................iysllSaGaElyygtlskspglStglRfa 255
                 +d gky++e+l+std+aL+Glrgl+nfG+d ++    s +++++n++ + +                     sll aG+E+yy++ls+++glStglRf+
  KKY21132.1  98 HDAGKYCVEGLASTDNALVGLRGLWNFGSDLSTCPGqSGSETAVNTEETSEVlsegltdkppatsfskssRPSLLCAGGEFYYSPLSSVIGLSTGLRFT 196
                 *****************************9776655422333333333333366667777788888877799*************************** PP

       MDM10 256 Tlsas...............................tgkPltlTltlnPllGsisstYsvkasenstlssrydFNvYSyeSnlslGmeLwrksrkkkss 323
                 Tl a                                +++P+tlTltl+Pl+Gs++stYsv+as+ ++lssr++FNvYS+eS+++lG e+wrks +  ++
  KKY21132.1 197 TLQAVtaspatssrpskplsgtssaltsqlpshisgSSFPYTLTLTLTPLTGSLASTYSVRASPFLSLSSRFGFNVYSWESEYVLGAEIWRKSPRIGAQ 295
                 ***444555556666667777777777788888888***********************************************************9988 PP

       MDM10 324 eeeeeeeekekeeesvkskkeakkkkkekekeeekstfssslekadkeksvees.fqakleWrldkeekeeekkkekkeeeefssVlKarldqdlnvkl 421
                  + e +++ e +++++++  e+ k            +  s l++ ++e s ++s     le      +k ++++++++  +  +sV+K+rld+ +n + 
  KKY21132.1 296 VDPEPKDNLEWARKKMAEWYEEGK------------AEISGLTSSTTEPSSIDSpSLRILE------TKPTSPNSTSSPPKLEESVIKLRLDDRWNFRA 376
                 887766666555544332222211............1222233333333333331333334......33334455666678899*************** PP

       MDM10 422 lWeGrvkslLvsaGvelslkklekss.............elklksfrk.lGleiqYss 465
                 lW+Gr+k+lLvs+G ++ + ++                   ++ +f++ +G+e+ Yss
  KKY21132.1 377 LWTGRIKELLVSTGFSVGPASKMGLLqnssgggggggsaIGNSGPFQGsFGVEVVYSS 434
                 ******************876653336889*******984445566666********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.32s 00:00:00.87 Elapsed: 00:00:00.50
# Mc/sec: 2633.81
//
Query:       KKY21133.1  [L=599]
Description: putative mitochondrial processing peptidase alpha [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-51  173.1   0.0    1.1e-50  172.3   0.0    1.5  1  Peptidase_M16_C  Peptidase M16 inactive domain
    9.8e-39  132.7   0.0    1.7e-38  131.9   0.0    1.4  1  Peptidase_M16    Insulinase (Peptidase family M16)


Domain annotation for each model (and alignments):
>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.3   0.0   1.2e-54   1.1e-50       2     183 .]     221     493 ..     220     493 .. 0.98

  Alignments for each domain:
  == domain 1  score: 172.3 bits;  conditional E-value: 1.2e-54
                      H-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSH.............................................. CS
  Peptidase_M16_C   2 ltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaska.............................................. 49 
                      ++++ ++++++ fY+pe++v+a++G v+hee+vkl ++yfgd+k sk                                               
       KKY21133.1 221 INKQLVQKYRDVFYQPERIVVAFAG-VPHEEAVKLTKQYFGDMKRSKPllsqtgadskmsssssstssetssnsslasttssssyssssssgil 313
                      8999*********************.******************************************************************** PP

                      ...................................CSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECTCTHTTHHHHHHHHHHHHS CS
  Peptidase_M16_C  50 ...................................ppakptgepltpatlkkppvvlkkldeeqahlslafegpskendeddlalavlntlLgg 108
                                                         + +++tg+ l    +  pp+v + +  + +h+ +afe++++ + +d++ala+l+tlLgg
       KKY21133.1 314 skiplfknlstsassnadvvsqisplqpsssldlnQSSHYTGGYLA--LPPIPPPVSPLQI-PLTHIHIAFEALPI-SSPDIYALATLQTLLGG 403
                      ***********************************999********..8888888888887.9*************.***************** PP

                      S...........TTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHH.T...S-HHHHHHHHHHH CS
  Peptidase_M16_C 109 g...........mesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevilkelrklkke.g...lteeeleraknql 183
                      g           m+srLytn+++++g+++s+ afn+sy+dsglfgi+a++ p  +  +v+vi++el+ l+ + g   l++ e++raknql
       KKY21133.1 404 GgsfsaggpgkgMYSRLYTNVLNQHGWVESCAAFNHSYTDSGLFGIAASCSPYYAHHMVDVICRELQSLTLDsGfsaLQPGEVSRAKNQL 493
                      ************************************************************************8899999**********8 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.9   0.0   1.9e-42   1.7e-38       1     149 []      68     215 ..      68     215 .. 0.99

  Alignments for each domain:
  == domain 1  score: 131.9 bits;  conditional E-value: 1.9e-42
                    EEEEEE-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHH CS
  Peptidase_M16   1 rvalesdppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkypsnklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfk 96 
                    rva+es  p ++s vg++vdaGSrye+  l+G++H+++++afk+Tk  +++ ++e le+lGg++++ +sre  +Y+  ++++++++ + +la++++
     KKY21133.1  68 RVATESL-PGPFSGVGVYVDAGSRYEDASLRGVSHIIDRLAFKSTKSKTADDMIEQLERLGGNVQCASSREALMYQSATFNSAVPTTIGLLAETIR 162
                    6899999.9*************************************************************************************** PP

                    SBTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTTSGGGSHSS-TH CS
  Peptidase_M16  97 aplleesevererkvvekeveavdaepekvveenlhaaayrekalgrsllgpe 149
                    +pl++++ev+ + k++e+e+ +++a+p+ +++e +h+aay++++lg++ll+p+
     KKY21133.1 163 DPLITDEEVDDQLKTAEYEIGEIWAKPDLILPELVHMAAYKDNTLGNPLLCPK 215
                    ***************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       970  (0.0541023); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.50
# Mc/sec: 3585.51
//
Query:       KKY21134.1  [L=630]
Description: hypothetical protein UCRPC4_g03830 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-29  103.6   0.0    1.9e-29  103.0   0.0    1.1  1  Bestrophin    Bestrophin, RFP-TM, chloride channel
    7.2e-14   51.9   0.0    2.6e-13   50.1   0.0    1.9  2  FHA           FHA domain
    3.5e-08   33.1   5.6    7.5e-08   32.0   5.6    1.6  1  zf-RING_11    RING-like zinc finger
    6.3e-06   26.4   6.3    1.2e-05   25.6   6.3    1.5  1  zf-RING_2     Ring finger domain
    0.00014   22.1   0.0    0.00032   21.0   0.0    1.6  1  Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic d
     0.0015   18.3   5.8     0.0029   17.5   5.8    1.5  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
     0.0022   17.8   6.4     0.0046   16.8   6.4    1.6  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
     0.0026   17.6   2.8     0.0047   16.7   2.8    1.4  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
     0.0078   16.2   5.6      0.015   15.3   5.6    1.5  1  zf-RING_UBOX  RING-type zinc-finger
  ------ inclusion threshold ------
      0.036   14.1   1.4      0.065   13.3   1.4    1.4  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
      0.055   13.8   2.9       0.15   12.4   2.9    1.8  1  zf-rbx1       RING-H2 zinc finger domain
      0.094   12.7   4.6       0.17   11.9   4.6    1.4  1  zf-RING_5     zinc-RING finger domain
       0.22   11.5   0.7       0.59   10.1   0.7    1.7  1  DUF1610       Domain of unknown function (DUF1610)
       0.61   10.0   3.0        1.1    9.2   3.0    1.5  1  PHD           PHD-finger
        2.1    8.3   4.8        4.4    7.3   4.8    1.5  1  Prok-RING_4   Prokaryotic RING finger family 4
        3.4    7.4   6.0        3.3    7.4   4.5    1.8  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type


Domain annotation for each model (and alignments):
>> Bestrophin  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.0   1.7e-32   1.9e-29      90     291 ..     387     594 ..     373     601 .. 0.88

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 1.7e-32
  Bestrophin  90 arslarqvrglsdeegrlarrtilrylvlllvlffralssrvrkr.......................fptlehlleagllteeeakilenkywvplqW 165
                 +++ + +v+g + +e++la+ +++   v+ l+++++ +++++r +                       +p++++ll+++ +  +e     +   +plq 
  KKY21134.1 387 TITTTSYVKGSKPSEAELADIERT---VRILIAIPYTVKNHLRAEwgaafakntsdisnsaevanpkyNPEYADLLPPA-MEGHED----QGLGLPLQ- 476
                 2334455566446999********...*********************************9999887777777999998.666666....99******. PP

  Bestrophin 166 avsllrrlaerlkelakegrikddqalkeleeelnelraklgsleridwtpiPlvYtqvvtravylyfllallgrqfldseidlylPvftllq...... 258
                    l++ +   +k++ ++g+  ++qa  +l+ +ln+l++++g++e i++tp P+++ ++  ++++ly ++               lP f++++      
  KKY21134.1 477 ---LTFFVDGFVKRAFDRGWYGAPQA-SQLQVQLNTLTDAYGKMEMIRMTPFPVAHLIHARQVLALYGAV---------------LP-FAMVDelgwwt 555
                 ...8888889**************95.6******************************************...............**.*********** PP

  Bestrophin 259 ......faffffGllkvaeqlenPFGedddDlelnalid 291
                       + f+++G++ +++qle+PFG+d++D++++a+ +
  KKY21134.1 556 vpivtlIIFTLYGIEGIGSQLEDPFGYDRNDIKMDAIAE 594
                 *****966*****************************54 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   2.3e-16   2.6e-13       3      69 .]      74     156 ..      72     156 .. 0.79
   2 ?   -1.9   0.0       4.1   4.6e+03      19      30 ..     189     200 ..     181     218 .. 0.80

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 2.3e-16
                 EESS..............TTSSEETTSTTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEEST....TSEEEE-TTEEEEET CS
         FHA   3 iGRs..............sdcdivlddpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigk....gepveLksgdvielG 69 
                 +GR               sd+ + ++++++SrkH++++f+ g  ++y++D+ S+ Gtf+N++r+++    ++  ++k+gdv++lG
  KKY21134.1  74 VGRYseregipianpttpSDAPVGFKSKVVSRKHCEFSFQHG--SWYIKDVASSSGTFLNHVRLSQpnqvSRLFPVKDGDVVQLG 156
                 66666555555544443333334455899*************..**********************9888888999*******98 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4.1
                 TTTEEEEEEETT CS
         FHA  19 SrkHalikfdkg 30 
                   +Ha+++++k+
  KKY21134.1 189 QERHAQLVRKKP 200
                 579****99887 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   5.6   6.7e-11   7.5e-08       1      29 []     216     241 ..     216     241 .. 0.95

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 6.7e-11
  zf-RING_11   1 eCsICLeefkpgqalfilpCsHtFHfkCI 29 
                 eCsICL+++    +lf++pC H++HfkCI
  KKY21134.1 216 ECSICLSSVM---SLFVAPCAHVWHFKCI 241
                 9********6...5**************9 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   6.3   1.1e-08   1.2e-05       2      44 .]     216     259 ..     215     259 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.1e-08
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerw.lrssst...CPlCr 44 
                 eC+ICl+++    s+ + pC Hv h++C+  + + ++     CP+Cr
  KKY21134.1 216 ECSICLSSV---MSLFVAPCAHVWHFKCIYPLiIGKRYPhftCPNCR 259
                 8*****777...5688889**********9953444444888****9 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   2.9e-07   0.00032      34      82 ..     101     156 ..      92     159 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.9e-07
                   TTS-TT-EEEEEETTEEEEEE-CESS--EETTEE-SECC.......--TTSEEEET CS
  Yop-YscD_cpl  34 kevsrkhlkLeveeesvrledlgsrngllvngerveele.......lrpgdvlelG 82 
                   k vsrkh++ ++++ s+ ++d++s  g+++n+ r ++ +       +++gdv++lG
    KKY21134.1 101 KVVSRKHCEFSFQHGSWYIKDVASSSGTFLNHVRLSQPNqvsrlfpVKDGDVVQLG 156
                   679********************************955455688999999999999 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   5.8   2.6e-06    0.0029       1      41 []     217     258 ..     217     258 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.6e-06
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHCTSSB-..-TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvk..CPlC 41 
                 C+iCl+ ++    + +C H  ++kCi  ++  +++    CP+C
  KKY21134.1 217 CSICLSSVMSLF-VAPCAHVWHFKCIYPLIIGKRYPHftCPNC 258
                 **********99.*****************974443355**** PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   6.4   4.1e-06    0.0046       1      40 []     216     258 ..     216     258 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.1e-06
  zf-C3HC4_2   1 kCpiCldmlkdpsvvtpCgHvfCqkCilr.sLeekn...eCPlC 40 
                 +C iCl +    + v+pC Hv + kCi +  + +      CP C
  KKY21134.1 216 ECSICLSSVMS-LFVAPCAHVWHFKCIYPlIIGKRYphfTCPNC 258
                 6*******996.8**************99544443233578888 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   2.8   4.2e-06    0.0047       2      45 ..     214     260 ..     213     263 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.2e-06
                 GSB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH....TT-B-TTT-- CS
  zf-C3HC4_3   2 deeCviClerprnvvllpCgHlvlCeeCaekllk....rkkkCpiCrr 45 
                 + eC+iCl++  + ++ pC H+    +C   l       + +Cp Cr+
  KKY21134.1 214 SGECSICLSSVMSLFVAPCAHV-WHFKCIYPLIIgkryPHFTCPNCRA 260
                 579*******************.99*****99867788999******7 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   5.6   1.4e-05     0.015       1      39 []     217     256 ..     217     256 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.4e-05
  zf-RING_UBOX   1 CpICle.lftdPlvl.pCGHtFCreClw.elskslegafkCP 39 
                   C+ICl+ +++  l++ pC H+ + +C+   +  ++ ++f+CP
    KKY21134.1 217 CSICLSsVMS--LFVaPCAHVWHFKCIYpLIIGKRYPHFTCP 256
                   *****62443..22447**********6689999*******9 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.4   5.8e-05     0.065      32      84 ..     214     265 ..     171     266 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.8e-05
                 TS--TTCSTTTTTS-EEEBTTS-EEEHHHHHHHHH.HHSTSSB-TTTSSB--BE CS
  zf-ANAPC11  32 dGtcpsckfpGddcplvlGkckhnfhlhcilkwle.tetskglcpmcrqtfklk 84 
                  G c  c +     +l +  c h++h +ci+  +  ++  +  cp cr  ++l+
  KKY21134.1 214 SGECSICLS--SVMSLFVAPCAHVWHFKCIYPLIIgKRYPHFTCPNCRAVWNLE 265
                 444555543..346889999***********986515667889******99886 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.9   0.00013      0.15      16      55 .]     216     259 ..     205     259 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00013
     zf-rbx1  16 eckapgdeecpvvlGeCgHaFHlhCiskWlkt....rkvCPlcr 55 
                 ec+   ++ +++ +  C H++H++Ci   +      + +CP cr
  KKY21134.1 216 ECSICLSSVMSLFVAPCAHVWHFKCIYPLIIGkrypHFTCPNCR 259
                 4444444435577889**********998876556667899997 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   4.6   0.00015      0.17       1      43 [.     216     259 ..     216     260 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
   zf-RING_5   1 hCnkCfeklskeekfyltsCgHifCekClkkll....ekeavCpiCr 43 
                 +C++C +++      ++ +C H+ + kC+  l      + ++Cp Cr
  KKY21134.1 216 ECSICLSSV---MSLFVAPCAHVWHFKCIYPLIigkrYPHFTCPNCR 259
                 599999999...99*********************9999*******9 PP

>> DUF1610  Domain of unknown function (DUF1610)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.7   0.00053      0.59      13      22 ..     249     258 ..     242     258 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00053
     DUF1610  13 ravvFpCPNC 22 
                 r+ +F CPNC
  KKY21134.1 249 RYPHFTCPNC 258
                 799******* PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.0   0.00099       1.1       2      50 ..     217     259 ..     216     261 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00099
                 BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTH CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCk 50 
                 C++C +    +   ++   C +  H kC+ p    ++ p+  ++C++C+
  KKY21134.1 217 CSICLS----SVMSLFVAPCAHVWHFKCIYPLIIGKRYPH--FTCPNCR 259
                 888888....677788889*************99777775..******8 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.8    0.0039       4.4       1      37 [.     217     259 ..     217     266 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0039
  Prok-RING_4   1 CvlCgeqekkailepCgHlvCkeCfdsk....dls..sCPlCq 37 
                  C +C ++     ++pC+H+   +C         +   +CP C+
   KKY21134.1 217 CSICLSSVMSLFVAPCAHVWHFKCIYPLiigkRYPhfTCPNCR 259
                  9******************999998766443233377999998 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.5     0.003       3.3       4      33 ..     214     241 ..     211     256 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.003
  Zn_ribbon_17   4 lksCayCelavkgrvvlcgvCeHvlHasCa 33 
                     +C++C  +v  ++v +  C Hv H+ C+
    KKY21134.1 214 SGECSICLSSVMSLFVAP--CAHVWHFKCI 241
                   568*****9999988876..*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       840  (0.0468515); expected 358.6 (0.02)
Passed bias filter:                      658  (0.0367003); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 4077.20
//
Query:       KKY21135.1  [L=405]
Description: hypothetical protein UCRPC4_g03831 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       857  (0.0477997); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 2539.94
//
Query:       KKY21136.1  [L=245]
Description: hypothetical protein UCRPC4_g03832 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.30s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1666.94
//
Query:       KKY21137.1  [L=206]
Description: hypothetical protein UCRPC4_g03833 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1388.89
//
Query:       KKY21138.1  [L=767]
Description: putative vacuolar protein sorting vps16 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-89  299.5   0.0    2.1e-64  217.8   0.0    2.2  2  Vps16_N      Vps16, N-terminal region
    4.4e-87  292.1   0.0    6.8e-87  291.5   0.0    1.2  1  Vps16_C      Vps16, C-terminal region
  ------ inclusion threshold ------
      0.012   15.9   0.0        5.5    7.4   0.0    3.4  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> Vps16_N  Vps16, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   2.6e-27   1.6e-23       3     137 ..       8     146 ..       6     152 .. 0.88
   2 !  217.8   0.0   3.5e-68   2.1e-64     188     409 ..     125     347 ..     112     348 .. 0.93

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 2.6e-27
     Vps16_N   3 aewellkdsyyrkeelgtadwelkeevedllvavapygGpiAvtrspsklepa..adarPvyiqiyslsGrlLkkllwnkeklvklgwseeeeLivvqk 99 
                 a we++ d++yrk++l++a ++ + e+e+ +v  apygG+iA+ r++sk  +   ++   + i+iys+sG+l+ +l+w+++++  +gwse+e+L+v+++
  KKY21138.1   8 AGWEKVGDQFYRKVKLYEAIFDSDIELENYVVVGAPYGGAIALYRDESKILRYraGSSAKSGIDIYSCSGQLISRLNWDQGSIKGIGWSEDEKLLVITE 106
                 67*********************************************997654445555567************************************9 PP

     Vps16_N 100 a...gavlvygllGeksfsigeevesvkvrecrifatsage 137
                 +   g+v+ ++++    ++++  ve+    e +if + a+e
  KKY21138.1 107 DvpeGQVHSWSIIPP-AYTLSRSVEVLVALEKTIFVIDASE 146
                 744477777777555.5**********99***9*9988775 PP

  == domain 2  score: 217.8 bits;  conditional E-value: 3.5e-68
     Vps16_N 188 vdevvqillavGeslkliteqsaka.vssnekvvkisvsdnrrhlalytetgkillisvdlskklleleldakdipkqiaWvgndaVvvsfesllvlvg 285
                   + v++l+a  +++  i++++a+    s   + ++ vs+n r+ al+te+gk++++s+d+++k+ e++  a+  p++++W+gnd+V++++e+++ +vg
  KKY21138.1 125 LSRSVEVLVALEKTIFVIDASEAEDrGLSDGPFKHVNVSPNGRFAALFTEVGKVWVVSSDFQNKFSEYNSRARTRPRKVEWCGNDSVILAWEDEIHMVG 223
                 55677788888889998999887334456689******************************************************************* PP

     Vps16_N 286 kagdsvqflydetanlsaEvDGvriltkssveflrrvpaasenifaigskePgalLveaqkkleeksskadeiLkeikdklekavddCieaaldefqpe 384
                 ++g   +++yd +  ++a++DG+r++t+++ efl++vp  +e++f++gs+ P++ L++  ++le+ks+kade ++ ik +l +avd+C++aa +ef++ 
  KKY21138.1 224 PNGVAAKYFYDGQVHVVADLDGIRLITNETCEFLHKVPDVTEEVFRLGSTSPASVLLDCVEQLEKKSPKADENIQRIKPNLPEAVDTCVQAAGQEFSIH 322
                 *************************************************************************************************** PP

     Vps16_N 385 lQKlLLraAsfGkaflrnknpdeyv 409
                 +QK LL+aAsfGk+ l+ +n d++v
  KKY21138.1 323 WQKQLLKAASFGKSVLDLYNSDDFV 347
                 **********************998 PP

>> Vps16_C  Vps16, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.5   0.0   1.1e-90   6.8e-87       1     310 [.     441     756 ..     441     764 .. 0.95

  Alignments for each domain:
  == domain 1  score: 291.5 bits;  conditional E-value: 1.1e-90
     Vps16_C   1 isyvkiAkkAyqeGRleLsikLlelEkraeeqvelLlklekselAlkkaiesgdteLiisvllelkkklalsdlfkllredplalklYkkfmkksdrat 99 
                 is++ iA+ Ay eGR +L+++Ll++E+ra++qv+lLl++e++e Al kaiesgdt+L++ vll++kkkl ls++f+++++ p+a  l    ++ +d + 
  KKY21138.1 441 ISFESIARAAYDEGRGHLATQLLNYEPRAGKQVPLLLDMEEDEVALDKAIESGDTDLVFFVLLHMKKKLPLSSFFRTINNRPMAAALVESSARSQDSEL 539
                 89************************************************************************************************* PP

     Vps16_C 100 LydlynqdDnkqelaelllqdal..keveglesaLksiadvysqaknse..leakliedqlkLlklqktledkf..avsfvglsldetvskLiligqdk 192
                 L+d+y+qdD+  + ++ll+ +a+   e + ++ +L+ + ++ ++ak+ +  l  +  ++  +Llk+q+ +++    + s++gls++et+ +L ++g  k
  KKY21138.1 540 LKDMYYQDDRPVDGSSLLFTEAMnqTELQAKTDKLRLASKLLTDAKDPSavLHTRSYGEVTQLLKMQEVFDKDVadNSSYIGLSVNETLYRLFKTGYPK 638
                 ***********************8778899999*************855226677888888***********9833578******************** PP

     Vps16_C 193 raeklrkdFkipekrlywLklkaLvelkkweelekfakSkkSPiGyePFvevllkqgnkkeAkkYipritglstqekvklyvevgdvkeAielAakekd 291
                 ra k++++Fk+p+k ++w++l+aLv++++w ele+  k +kSPiG+ePF++++l +gn + A+ +ip++t+    e+++++v++g +++A e+A+k kd
  KKY21138.1 639 RAAKVQSEFKMPDKTFWWVRLRALVAARNWGELEEVGKTRKSPIGWEPFFTEILGAGNTRLASSFIPKCTNTPVSERIEMWVKCGLIAKAGEEAFKVKD 737
                 *************************************************************************************************** PP

     Vps16_C 292 vseLkellervatveeell 310
                  + L++l e+ ++   + +
  KKY21138.1 738 LNALENLREKASGGASGEI 756
                 *******999887766665 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0   0.00092       5.5      17      57 ..      68     106 ..      49     119 .. 0.81
   2 ?    3.4   0.0     0.015        92       6      52 ..     165     211 ..     141     219 .. 0.66
   3 ?   -0.3   0.0      0.23   1.4e+03      48      80 ..     233     264 ..     228     274 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00092
  ANAPC4_WD40  17 gellvfRlngqrvwtleedkedsevrsLaWkpdgklLavay 57 
                  + + ++  +gq +  l  + ++++++++ W++d+klL++  
   KKY21138.1  68 SGIDIYSCSGQLISRL--NWDQGSIKGIGWSEDEKLLVITE 106
                  5566777778888888..77899**************9974 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.015
  ANAPC4_WD40   6 tmDLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgkl 52 
                  +    Al te g+++v   ++q+ ++  ++    + r+++W  ++++
   KKY21138.1 165 NGRFAALFTEVGKVWVVSSDFQNKFSEYNSRARTRPRKVEWCGNDSV 211
                  33345666666666666666666666656666666666666666555 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.23
  ANAPC4_WD40  48 pdgklLavaysdgevrlldaesgkvvhslsvks 80 
                   dg++ +va  dg +rl+  e+ + +h+++  +
   KKY21138.1 233 YDGQVHVVADLDG-IRLITNETCEFLHKVPDVT 264
                  6899999999998.899**********997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.52
# Mc/sec: 4417.79
//
Query:       KKY21139.1  [L=182]
Description: hypothetical protein UCRPC4_g03835 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-25   88.1  11.4    6.2e-25   88.1  11.4    1.8  2  Alb1      Alb1
  ------ inclusion threshold ------
        1.4    9.0  11.0        2.5    8.2  11.0    1.3  1  MRP-L28   Mitochondrial ribosomal protein L28


Domain annotation for each model (and alignments):
>> Alb1  Alb1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1  11.4   6.9e-29   6.2e-25       1     104 [.      14     121 ..      14     122 .. 0.93
   2 ?   -0.1   0.2      0.19   1.7e+03      44      80 ..     123     158 ..     118     172 .. 0.62

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 6.9e-29
        Alb1   1 khSRAarraespslnldkslkslprpektdre.....rtavlnealsagiskkkkkkkklskklrlrqekgleraeavterlekKieksisrakyvqeR 94 
                 khSRAarra+spsl++dks+ sl+rp ++++      + ++l+++  +g+sk +kk+kk s+++rlr+ekgleraea ++ le K+eks++++k++++R
  KKY21139.1  14 KHSRAARRAASPSLDVDKSILSLGRPISPSDNnptgqNYSALSAKGTNGVSK-TKKNKKESRNQRLRREKGLERAEAKVNILEVKREKSKNKVKVIKDR 111
                 8************************988888855565666999999999999.99******************************************** PP

        Alb1  95 kagwDeinkk 104
                 ++ w+e+ +k
  KKY21139.1 112 SRPWEEVDEK 121
                 ******9986 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.19
        Alb1  44 giskkkkkkkklskklrlrqekgleraeavterlekK 80 
                 +  k +k+k++  + + +++e++ e   ++ + l+ K
  KKY21139.1 123 KTDK-SKSKGSFEALADQMDEDEWEDEPETEKSLSLK 158
                 3333.66666666666666666666666666665555 PP

>> MRP-L28  Mitochondrial ribosomal protein L28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  11.0   0.00027       2.5       4      90 ..      65     152 ..      62     163 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00027
                 XXXXXXXXXXX....XXXXXXXXXXXXXXX..XXXXXXXXXXXXXSXSXXTTSSTTX..XSXXXXXX-HHHHHHHHHHHHHHHHHHHHH CS
     MRP-L28   4 eplkkkkkvdpqvvkrreerakkrlekqir..kleksakelkPveelivplksvdsakrrqrkllelskeelerrallekqwaryrqqe 90 
                 ++ k kk +  q  +r++  ++ + + +i   k+eks+++ k ++++  p + vd++++  + + + s+e l   ++ e +w+ + + e
  KKY21139.1  65 KTKKNKKESRNQRLRREKGLERAEAKVNILevKREKSKNKVKVIKDRSRPWEEVDEKSKTDKSKSKGSFEALAD-QMDEDEWEDEPETE 152
                 45566666777666666666666665555449**************************************9975.57777777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1645  (0.0917508); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.32s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1164.49
//
Query:       KKY21140.1  [L=250]
Description: putative negative transcriptional regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-56  188.3   0.1    9.8e-56  188.1   0.1    1.0  1  FMN_bind_2  Putative FMN-binding domain


Domain annotation for each model (and alignments):
>> FMN_bind_2  Putative FMN-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.1   0.1   5.4e-60   9.8e-56       1     167 [.       1     195 [.       1     196 [. 0.93

  Alignments for each domain:
  == domain 1  score: 188.1 bits;  conditional E-value: 5.4e-60
                 XXXXXXXXX--HCHHHHHHHHS-EEEEEEEETT....EEEEEEEE-EE......-TTSSEEEEEEETTSGGGGGT............TTS-EEEEEEEE CS
  FMN_bind_2   1 MYipkefaeedleelrqlirenplgtLvtaies....glqashiPfll...deeekgkgkLrgHlaraNpqakal...........eeeeevlvvfqgp 81 
                 M+ip+  ae ++++lr++i+enplg+L+tai       lq+shiP+l+   ++++++ g+LrgH+a++Npq +a+           +e++ vl++fqgp
  KKY21140.1   1 MHIPPYNAELRPAVLREFINENPLGILTTAIRTksfpLLQSSHIPWLIdhhSSDDSELGTLRGHIAKQNPQGQAIiqdltnrgeqhLEDD-VLILFQGP 98 
                 9******************************9999999**********998566667777***********************9966776.******** PP

                 EE.EE-CCCSSTTS-.....--EEEEEEEEEEEEEEE-......--HHHHHHHHHHHHHHHS-...--...--S-------HCHHHCTEEEEEEEEE CS
  FMN_bind_2  82 da.YvsPswYtekkett.kvvPTWnYaaVhvyGkakvi......edeeelrkqledltdqaEa...erkkpwkvedapekyiekllkaIvgieieit 167
                  + Yv+P++Yt++k++t kvvPTWnY+aV+vyG+ak++      e+e++l++ql+dl+ +aE+    +++pw+v+dape+yi +l+k+I+g+e++it
  KKY21140.1  99 VQhYVTPKFYTATKPATgKVVPTWNYEAVQVYGSAKFFfdskaeETEDFLKSQLQDLSMHAERsvmGHESPWEVADAPERYIGHLKKNIIGVEVKIT 195
                 999************************************************************44334555*************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1722.18
//
Query:       KKY21141.1  [L=630]
Description: putative translation initiation factor eif-2b delta subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-80  269.7   0.1    3.5e-80  269.2   0.1    1.1  1  IF-2B          Initiation factor 2 subunit family
  ------ inclusion threshold ------
      0.039   13.5   0.1      0.067   12.7   0.1    1.3  1  PP_kinase_C_1  Polyphosphate kinase C-terminal domain 1
      0.075   13.3   0.0       0.16   12.2   0.0    1.5  1  DndE           DNA sulphur modification protein DndE
       0.83    9.6   3.5        1.6    8.7   3.5    1.5  1  DVL            DVL family


Domain annotation for each model (and alignments):
>> IF-2B  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.2   0.1   7.9e-84   3.5e-80       3     279 ..     209     546 ..     207     548 .. 0.98

  Alignments for each domain:
  == domain 1  score: 269.2 bits;  conditional E-value: 7.9e-84
                 -SHHHHHHHHHHHHHHHHHHCCCSTHHHH....HHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHCCTTTSSHHHHHHHHHHHHHHHHHH.HHHHHHH CS
       IF-2B   3 rGspaiaiaalevllevikdaktskvaeL....keelrkaidlLkkarPtavslgnairrllkeiselksssdvkeakksliekikelike.ieeadek 96 
                  Gs+a+++a+l  +++vi+ ++t+ ++ L    +++l+++i +L+++rP+++s gn+ir+l+  is +++s ++ +ak++l+e+i+++i+e +  ad++
  KKY21141.1 209 CGSNARCVAMLLCFKRVIESYSTPAGTSLtrhlTTHLSHQITYLNACRPLSISQGNSIRWLKVRISTIDPSMPEPDAKAELCEAIDSFIREkVTVADQV 307
                 69*************************999999**********************************************************8889**** PP

                 HHHHHHTTC-TTEEEEEES--SHHHHHHHHHHHTTEEEEEEEEEXTTTTHHHTHHHHHHHTTXEEEEEEGGGHHHHHHCTESEEEEEXSEEETTSEEEE CS
       IF-2B  97 igdiaaelikdgdtilTicnsktvlevlraaakekkkfkVivvEsrPrlqGrltakeLvqagipvtlitdsavayvmseevdkvivGAdrilenGaian 195
                 i++ a+++i++gd+ilT+++s+ v ++l +a++++k+f+Vivv+srP ++Gr +a +L++agi+v +++  a+++ ++   +kv++GA+++++nG +++
  KKY21141.1 308 IARDASNKIQNGDVILTYAKSSIVERTLLEAHQAGKNFRVIVVDSRPLFEGRNLARSLAHAGIQVQYTLTHAISHAIRD-ATKVFLGAHAMMSNGRLYS 405
                 *******************************************************************************.******************* PP

                 ETTHHHHHHHHHHT..TXEEEEEXXGGGBESTSSSGGGSSXXBEXTHHHHEETTEESSTT....................................... CS
       IF-2B 196 kiGTsslAvlAkef..nipvlvvaeslkfservqldedifieerdpeellnitgeriaee....................................... 253
                 ++GT+ +A++Ake+  n pv+v++e+ kf+ rv+ld+ +++e + p++l+  ++++ +                                         
  KKY21141.1 406 RVGTALIAMMAKEKgdNLPVIVCCETVKFTGRVALDSIVMNEIASPDDLVELEDTNGVLTssapdsqakdsssksgkksksdkgggaggadsddedgks 504
                 ***********996559**************************************9988899************************************* PP

                 ................TEEEEEBSEEEEEGGGXSEEEETTEE CS
       IF-2B 254 ................elkvvnpafDvtPpelItliITevGv 279
                                 +l+++n+++DvtP+e+++++ITe+G+
  KKY21141.1 505 kssgkqgslqgwrdqqNLQLLNIMYDVTPAEYLDMVITEMGI 546
                 *****************************************7 PP

>> PP_kinase_C_1  Polyphosphate kinase C-terminal domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.5e-05     0.067      47     106 ..     326     383 ..     306     410 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.5e-05
                    -S--HHHHHHHHHHHTT-EEEEEES--SSS--HHHHHHHHHHHHHT-EEEE--TT--B-- CS
  PP_kinase_C_1  47 akdskivkaLieAaengkqvtvlvElkArfdeenNiewakkleeagvkvvygvvglkvha 106
                    ak+s + ++L+eA ++gk+  v+v     + e +N+  a++l +ag++v y +++   ha
     KKY21141.1 326 AKSSIVERTLLEAHQAGKNFRVIVVDSRPLFEGRNL--ARSLAHAGIQVQYTLTHAISHA 383
                    556666679***********9987655556677875..899***********99887775 PP

>> DndE  DNA sulphur modification protein DndE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.6e-05      0.16      50     106 ..     198     254 ..     187     259 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.6e-05
        DndE  50 dsglelnkktllGeyqdifeallkqrcqkdgletldeeelekalklHldrGiallas 106
                   gl++ ++++ G+++  + +ll+ +   + + t     l ++l++Hl + i +l+ 
  KKY21141.1 198 ALGLQMRDYVICGSNARCVAMLLCFKRVIESYSTPAGTSLTRHLTTHLSHQITYLNA 254
                 56899*******************777777777779**************9999985 PP

>> DVL  DVL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.5   0.00036       1.6      12      19 .]     214     221 ..     213     221 .. 0.98

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00036
         DVL  12 RCivMLLC 19 
                 RC++MLLC
  KKY21141.1 214 RCVAMLLC 221
                 9******* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1166  (0.0650343); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.53
# Mc/sec: 3555.84
//
Query:       KKY21142.1  [L=656]
Description: putative dna polymerase alpha primase associated subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-79  265.3   1.0      1e-78  264.7   1.0    1.2  1  Pol_alpha_B_N  DNA polymerase alpha subunit B N-terminal
      4e-34  117.8   0.0    5.7e-34  117.3   0.0    1.2  1  DNA_pol_E_B    DNA polymerase alpha/epsilon subunit B


Domain annotation for each model (and alignments):
>> Pol_alpha_B_N  DNA polymerase alpha subunit B N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.7   1.0   1.1e-82     1e-78       2     246 .]      22     256 ..      21     256 .. 0.87

  Alignments for each domain:
  == domain 1  score: 264.7 bits;  conditional E-value: 1.1e-82
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXX..XXXX........XXXX...XX CS
  Pol_alpha_B_N   2 dvlseleslmklhalsvedLfiKWEsfsikmkleeskkltlknlrefkkdlqdqlek..raksskkpktekks.aaatpraaakngdlfgmldgli 94 
                    +v  el+s+++l+++++++Lf+KWEs+s+km++e+++ l+l+++r+fkkd+qd++e+  r+ +   + +ek+s  +atp +aa n+d++gmld+l+
     KKY21142.1  22 EVSGELKSMLRLYSITPQELFYKWESYSLKMGAEDTN-LDLDTVRMFKKDVQDSVERehRG-KGGARGNEKRSnIHATP-KAAPNADVYGMLDELT 114
                    7889****************************99888.*******************6333.3377888888877****.6899************ PP

                    XXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX..XXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Pol_alpha_B_N  95 pstpalkkrklss..akrksafetpsrskssssklefsspeasktpasaekksesseglpsvsfsdrqnpgeiletLNehlelaegpiapfseles 188
                    p+++  ++r++++  +krk++f++p+ +k s  k++ s+p  s++ ++   +s+++   + v+fs+rqn+g++ etLN+hl++ae+piapf+e  +
     KKY21142.1 115 PNASYPRQRSNNGasMKRKAEFDSPTANKYS--KAS-STPR-SQQ-VNG--NSGTP---QGVPFSERQNAGQVTETLNNHLSAAEAPIAPFPE--P 198
                    **9998777777778888889***9966333..333.4554.332.222..34444...679*******************************..* PP

                    XXXXXXXXXXXXXXX--S---HHHHHHHHHHHHHHHHHHHHHHHT--GGGB--TTS-- CS
  Pol_alpha_B_N 189 rvkltaatDpkkykYrtMaqklsEasevLDdrIdefaeliqehyklddsefgdpalqs 246
                    r+k  a+tD+kk++Y++M+++ls++sevLD+rIdef+++iq+h++l+ds+fg++ +qs
     KKY21142.1 199 RIKTVANTDVKKFGYKPMSMRLSDSSEVLDERIDEFMAIIQKHHNLEDSAFGSAVSQS 256
                    ******************************************************9998 PP

>> DNA_pol_E_B  DNA polymerase alpha/epsilon subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.3   0.0   6.4e-38   5.7e-34       1     207 [.     365     595 ..     365     599 .. 0.93

  Alignments for each domain:
  == domain 1  score: 117.3 bits;  conditional E-value: 6.4e-38
                  EEEEES--S-TT----HHHHHHHHHHH.HTT--SEEEEES-SSBTTSHHHHHT---...........S--SSHHHHHHHHTHHHHTTS-TTSEEEEE- CS
  DNA_pol_E_B   1 vvivsglnldndnrsleaLrkiLqgyapeesppdvlilaGnfvdaahkaiasskvs...........tdekkenfdalalllsilesllekttvvlvP 87 
                  ++i sg++++++n+++e+L+++ +++a  es +d+l+l+G+f+d +h++ a ++++           ++ ++ + ++ a   ++l s ++++t++l P
   KKY21142.1 365 ILIGSGPYTADNNLDFEPLKTLCEKAA--ESMVDALVLTGPFLDLEHPLLAAGDFDlpdvkgvdpneANISTLFRLWIAPSIQKLVSAVPTITIILAP 460
                  6899***********************..***********************************6654455556666666666666677********* PP

                  -TTBTT-S.-SBSB----TTTTT--TTT...EEE--BSEEEEETTEEEEE--S-HHHH---EEESHHHHHS-HHHHHHHHHHHHTBS---SS...... CS
  DNA_pol_E_B  88 gpnDpans.tvlPqqPlprlllsrikrvfkelklvtNPsrielnsvevvltsddivkdlkreslkesntdverlrklvktildqrhlaPlap...... 178
                  +++D +++ +++P ++l ++ l  + ++   +k+v+NP +i++n++ ++++s+di+++l+re+l     +++  ++l++++++qrh++Pl+p      
   KKY21142.1 461 SARDIVSKhVSWPEDSLAKKELGLPLKQ---VKMVPNPVTISFNETVIGISSQDILYQLRREELFHGV-SSDSIARLSRYLIEQRHFFPLFPptsrea 554
                  *******99******************8...99********************************999.6**************************** PP

                  .............--B-GGGGGGGB-GGG---SEEE---SS- CS
  DNA_pol_E_B 179 .............tlrpvswdkddalvleplPdvlvlpdelp 207
                               +++++ ++k+ + + +  Pd+l++p+ lp
   KKY21142.1 555 lpksglengnatgAMLDIGYLKLGEWL-NVKPDILIIPSYLP 595
                  *************************87.999*******9665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.49
# Mc/sec: 4049.06
//
Query:       KKY21143.1  [L=384]
Description: putative cral trio domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-37  126.8   0.0      8e-37  126.4   0.0    1.2  1  CRAL_TRIO    CRAL/TRIO domain
    8.8e-14   51.4   0.2    1.8e-13   50.5   0.2    1.5  1  CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
  ------ inclusion threshold ------
      0.022   14.9   0.0      0.035   14.3   0.0    1.3  1  CRAL_TRIO_2  Divergent CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4   0.0   1.3e-40     8e-37       3     159 .]     159     303 ..     157     303 .. 0.95

  Alignments for each domain:
  == domain 1  score: 126.4 bits;  conditional E-value: 1.3e-40
   CRAL_TRIO   3 ileggkvgihgrDkegrpvlylrlgrfdpkklsleelvralvlvlerllkeleedgqvegvtvviDlkglslskmlwkp.isllkkilkilqdnyperl 100
                 ++e+gk++i+g+D +grp+lyl ++r++++     +++++lv+ lerl++++++  ++e+++++i+++ ++     +   +s+ ++++ ilq++yperl
  KKY21143.1 159 EQETGKQVITGFDINGRPCLYLFPSRQNTERTP--RQIHHLVYDLERLVDLMPP--GQETCALLINFNETK---SGQGAtLSQGRETMYILQNHYPERL 250
                 6899**************************999..*******************..***************...445555******************* PP

   CRAL_TRIO 101 gkilivnaPklfkfafklvkpfldektreKikfvspsnteatlekyidpeqlpkelGGt 159
                 g++l+ ++P+++k +f+l+ pf+d++treKikf+++      ++k++++ ql ke GG+
  KKY21143.1 251 GRALVTQLPWYIKGFFTLITPFIDPNTREKIKFNED------MTKHVPAVQLLKECGGE 303
                 **********************************44......9***************6 PP

>> CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.2     3e-17   1.8e-13       1      53 [.      78     137 ..      78     138 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 3e-17
  CRAL_TRIO_N   1 aydellahlqeseyk............lteeekfWltredhddaclLRfLRArkwdvekAikrLe 53 
                  +y  ll+ ++ +++             lt+  +++ltre     clLR+LRA+kw++++A +rL 
   KKY21143.1  78 KYATLLERVKAWTEIptglaakspkepLTDGDRMFLTRE-----CLLRYLRATKWHIDQAETRLR 137
                  79999999999999999999999999*************.....*******************97 PP

>> CRAL_TRIO_2  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   5.9e-06     0.035      35     131 ..     211     302 ..     177     311 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.9e-06
  CRAL_TRIO_2  35 vgkeyvlVyfhtglssenkpslswlkkvystlprrykknlkklyivhpstfvktllktvlsafvsskfrkkveyvsrleeLarkidrtqllkslPeg 131
                   ++ + l++  + ++s +   ls  + ++ +l+++y+++l +  + +  +++k ++ t+ ++f  +  r+k+ +    e++ +++   qllk+++ g
   KKY21143.1 211 GQETCALLINFNETKSGQGATLSQGRETMYILQNHYPERLGRALVTQLPWYIKGFF-TLITPFIDPNTREKIKF---NEDMTKHVPAVQLLKECG-G 302
                  344488888888899999999***********************************.**************555...567778888888888888.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2474.27
//
Query:       KKY21144.1  [L=278]
Description: putative six-hairpin glycosidase-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.098   13.3   0.0        0.2   12.3   0.0    1.6  1  DUF3528   Protein of unknown function (DUF3528)


Domain annotation for each model (and alignments):
>> DUF3528  Protein of unknown function (DUF3528)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.1e-05       0.2      27      56 ..     203     232 ..     182     274 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.1e-05
     DUF3528  27 pqvqpvRevafrdyaldasgKWhhrgnlas 56 
                   v+p  e+a+  +ald + KW++r nl+ 
  KKY21144.1 203 NSVNPAFEIAYLRFALDIAMKWKQRQNLTV 232
                 579999*********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1965.76
//
Query:       KKY21145.1  [L=555]
Description: putative chitin synthase export chaperone [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-53  182.5   9.9    1.7e-53  181.9   9.9    1.3  1  Chs7      Chitin synthase export chaperone
    1.2e-25   89.7   4.7    1.1e-24   86.7   4.7    2.4  1  SRP9-21   Signal recognition particle 9 kDa protein (SRP9)


Domain annotation for each model (and alignments):
>> Chs7  Chitin synthase export chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.9   9.9   1.9e-57   1.7e-53     160     286 ..       1     126 [.       1     127 [. 0.99

  Alignments for each domain:
  == domain 1  score: 181.9 bits;  conditional E-value: 1.9e-57
        Chs7 160 lfivtflialdtfkswtaelsstktiaLfvllyllnlvllvvyvvlqlilvlrvLeerwplgalllgvllfvigqvllyvlskkiCegvkhyidGlffe 258
                 +f+++++++l+tfk+w a+ls+t+t++Lfv++y++n+++l++yv++q++lv ++L++rwplg++++g+++f+igqv lyv+s+ iC++++hy+d+lff+
  KKY21145.1   1 MFVISGAVSLLTFKDW-AGLSPTNTVGLFVVTYIFNAICLFIYVIMQILLVTNTLQDRWPLGDIAFGCFFFTIGQVALYVFSEPICNSIQHYLDSLFFA 98 
                 79**************.********************************************************************************** PP

        Chs7 259 tlcnllavmmvykfWdsiTeddlefsvg 286
                 t+cnllavmmvyk+WdsiT++dlefsvg
  KKY21145.1  99 TVCNLLAVMMVYKYWDSITKEDLEFSVG 126
                 ***************************8 PP

>> SRP9-21  Signal recognition particle 9 kDa protein (SRP9)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   4.7   1.2e-28   1.1e-24       2      95 ..     362     489 ..     361     490 .. 0.81

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 1.2e-28
     SRP9-21   2 ktsqefleqsslLlearPsttrittkYsik......akkkkkkkkkkkaksekkaskas...................................pprgt 59 
                 ++++++l+qsslLl  +PsttrittkY+++      +       +   a++ +++++++                                   p+ +t
  KKY21145.1 362 DSVNAYLHQSSLLLTTYPSTTRITTKYTLPrktpppE-------RPIPANRLTTKNSSKveksknlprktknadtngdvamtdssaagdskhpkPKPAT 453
                 67899*************************6554431.......2222222222222222334456788889999******************999*** PP

     SRP9-21  60 ltlKtydpvsGvclkYkTnkaaevsRlisalgrlgr 95 
                 lt+Kty+p sG+clkY+T+k+aev+Rl+ +lgrl+ 
  KKY21145.1 454 LTFKTYEPGSGICLKYSTDKQAEVGRLMLGLGRLAA 489
                 *********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3602.29
//
Query:       KKY21146.1  [L=746]
Description: putative ribonucleotide reductase small subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.7e-121  404.3   1.4   3.7e-121  403.9   1.4    1.2  1  Ribonuc_red_sm  Ribonucleotide reductase, small chain
    5.6e-41  140.4   0.1    2.2e-40  138.4   0.0    2.0  3  TruB_N          TruB family pseudouridylate synthase (N termi
    5.7e-05   23.2   0.0    0.00012   22.1   0.0    1.5  1  TruB_C_2        tRNA pseudouridylate synthase B C-terminal do


Domain annotation for each model (and alignments):
>> Ribonuc_red_sm  Ribonucleotide reductase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  403.9   1.4  6.2e-125  3.7e-121       1     279 []     419     687 ..     419     687 .. 0.98

  Alignments for each domain:
  == domain 1  score: 403.9 bits;  conditional E-value: 6.2e-125
                     TT-TTS-SSHHHHHHHHHHHCT---GGGS-GHHHHHHHHSTS-HHHHHHHHHHHHHHHHHHHHHHHCHHHCHHCCBSSHHHHHHHHHHHHHHHHH CS
  Ribonuc_red_sm   1 rfvlfpikypeiwelykkleanfWtpeevdlskDlkdwkekLsedekefikkvlaflalldtivnenlverllsevqipearafygfqaamEniH 95 
                     rfvlfp+ky+eiw++ykk+ea+fWt+ee+dlskDl+dw+++L++de+ fi++vlaf+a++d+ivnenlver++ evq+pear+fygfq++mEniH
      KKY21146.1 419 RFVLFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMMENIH 513
                     79********************************************************************************************* PP

                     HHHHHHHHHHHT.-HHHHHHHHCHHHH-HHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTSSHHHHHHHHHHHHH CS
  Ribonuc_red_sm  96 aesYsllletlvkdekekdelfnaieenpalqkkaewikkwyeskkdeekfaerlvafallegilfysgFaailwlkkrgllpglaeiielilrD 190
                     +e+Ysll++t++k++k+++ lf+ai+++p+++kka+w+  w++++++   fa+rlvafa++egi+f+++Fa+i+wlkkrg++pgl++++eli+rD
      KKY21146.1 514 SETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIHWIQDQES--CFAQRLVAFAAVEGIFFSGSFASIFWLKKRGMMPGLTFSNELISRD 606
                     *******************************************8884..6********************************************* PP

                     HHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT.BTTCHHHHHHHHHHHHHHHHHHCTT---SS-TT---C CS
  Ribonuc_red_sm 191 eglHtdfagllfkelkeenelenkeleeeveelikeavelEkefitdalpvellglnkedvkqYieyvadrllmnlgyeklYnveeenP 279
                     eglHtdfa+llf++l  +    n+++++ ++++i+eave+E+ef+tdalp+ llg+n+ ++kqYie+vadrll +lg +k+Yn+  +nP
      KKY21146.1 607 EGLHTDFACLLFSHL--N----NRPSKKVIQDIITEAVEIEQEFLTDALPCGLLGMNATLMKQYIEFVADRLLIALGNQKFYNS--TNP 687
                     ***************..5....56************************************************************..998 PP

>> TruB_N  TruB family pseudouridylate synthase (N terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.4   0.0   3.7e-44   2.2e-40       7     135 ..      42     173 ..      34     183 .. 0.91
   2 ?   -3.5   0.0       2.1   1.2e+04      78     101 ..     190     213 ..     188     217 .. 0.79
   3 ?   -2.7   0.0       1.1   6.7e+03     133     149 .]     279     295 ..     276     295 .. 0.85

  Alignments for each domain:
  == domain 1  score: 138.4 bits;  conditional E-value: 3.7e-44
                 S-EEESS---TT-EEEEEEEEGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHH.HC-EEE---------------- CS
      TruB_N   7 kkvGhtGtLDplatGvLvvavgeaTklleylleadKeYeatirlgaetdteDaegeileeekveklteekleevlk.kftGeieqvppmySAvkvnGkr 104
                  k Gh+GtLDplatG+L+++vg++Tk l ++l  +K+Ye+++ +ga+tdt+D eg+++ ++ ++++t+e+ e+++k +f G+i+qvpp++SA+++nGk+
  KKY21146.1  42 VKLGHGGTLDPLATGILICGVGKGTKDLPSFLGCKKTYETVVLFGAATDTYDCEGKVVGRAPYQHITRETTEKIIKeHFIGQIKQVPPIFSALRINGKH 140
                 49********************************************************9989***********996279******************** PP

                 ---------------..--EEEEEEEEEEEEEE CS
      TruB_N 105 lyelaregeeverkk..rkvtiyelelleveep 135
                 +y++areg e+ r+   r+++++e+e++e+ ep
  KKY21146.1 141 AYDYAREGLELPREMaaRDMKVDECEIVEWYEP 173
                 ********998755333************9887 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.1
                 HHHHHHC-EEE------------- CS
      TruB_N  78 eevlkkftGeieqvppmySAvkvn 101
                 +e++kk+ Ge +q   + SA    
  KKY21146.1 190 KEAVKKVYGEASQLQDAASAKPRG 213
                 578999999999999999997644 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.1
                 EEEEEEEEEEESTTTTH CS
      TruB_N 133 eepevelevecskGtYi 149
                  +p v++++++s+G+Y+
  KKY21146.1 279 GPPAVKVRLTVSSGFYV 295
                 567899**********7 PP

>> TruB_C_2  tRNA pseudouridylate synthase B C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0     2e-08   0.00012       1      37 [.     296     335 ..     296     349 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2e-08
                 HHHHHHHHHHTTS-EEEEEEEEEEETTE...GG-..B-HH CS
    TruB_C_2   1 RtLcdDiGeaLgcgAhveeLRRtrvgpf...deedmvtle 37 
                 R+ c+D+G aLg  + ++ L R r g+f   d++++++ +
  KKY21146.1 296 RSFCHDLGIALGSMGLMSSLVRSRQGEFdiaDHDNVMSYS 335
                 99**************************665555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.51
# Mc/sec: 4405.35
//
Query:       KKY21147.1  [L=369]
Description: putative serine threonine-protein kinase eg2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-62  209.5   0.0    7.9e-62  209.0   0.0    1.2  1  Pkinase         Protein kinase domain
    1.7e-40  139.0   0.0      3e-40  138.1   0.0    1.4  1  Pkinase_Tyr     Protein tyrosine kinase
    4.8e-06   26.1   0.1    3.9e-05   23.1   0.0    2.2  3  Kinase-like     Kinase-like
    0.00024   20.5   0.1     0.0004   19.8   0.1    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0049   16.5   0.0      0.012   15.2   0.0    1.7  1  RIO1            RIO1 family
  ------ inclusion threshold ------
       0.03   13.8   0.1       0.11   12.0   0.0    2.0  2  YrbL-PhoP_reg   PhoP regulatory network protein YrbL
      0.059   13.0   0.0       0.28   10.8   0.0    2.0  2  FTA2            Kinetochore Sim4 complex subunit FTA2
      0.089   11.7   2.4       0.15   11.0   0.1    1.9  2  Haspin_kinase   Haspin like kinase domain
        3.9    6.2   6.7         14    4.3   6.7    1.8  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.0   0.0     4e-65   7.9e-62       1     242 [.     122     353 ..     122     358 .. 0.89

  Alignments for each domain:
  == domain 1  score: 209.0 bits;  conditional E-value: 4e-65
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 +e  + lG+G+fG+Vy ++e+e g   A+K++ k++  + +  k+v+rEi+i  +l+hpn+++ly+ f+++++++l+le++ +gel ++l++ g ++e+
  KKY21147.1 122 FEIGKALGKGKFGRVYLVREREHGFVCALKVLHKSELIQGRVeKQVRREIEIQSNLRHPNVLQLYGHFHDSKRIFLILEFAGKGELYKHLRKAGRFPES 220
                 577899****************************9988776669******************************************************* PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH....TTSCBSHHHHHHHHHHHHHHHHHS CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvl....keneyskkvDvWslGvilyelltg 193
                 +a ++++q++++l+ylHsk++iHrD+KpeNiL+  +ge+Ki+DFG + ++ ++   ++ +gt +Yl+PE++     en y+++vD+WslGv++ye+l g
  KKY21147.1 221 KAAQYIAQMATALRYLHSKHVIHRDIKPENILVGIHGEIKISDFGWSVHAPNNR-RNTLCGTLDYLPPEMVkpgrLENFYDENVDLWSLGVLMYEFLVG 318
                 ***************************************************988.****************877556899******************* PP

                 S-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHH CS
     Pkinase 194 kppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllk 242
                 + pf+++   ++ ++++             + ++  +s is ea+dll+
  KKY21147.1 319 EAPFEDTPVMTH-RRIA-------------RREMTIPSFISAEATDLLE 353
                 *****3333332.2222.............2345555666666666665 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.1   0.0   1.5e-43     3e-40       2     238 ..     123     352 ..     122     356 .. 0.86

  Alignments for each domain:
  == domain 1  score: 138.1 bits;  conditional E-value: 1.5e-43
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH..HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee..keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  e+gk lG+G+fG+V+  + +    ++   +a+K+l+++   +   ++++ +e++i ++l+hpn+++l+g   +++++++++e++ +G+L k+Lrk   
   KKY21147.1 123 EIGKALGKGKFGRVYLVRER----EHGFVCALKVLHKSELIQGrvEKQVRREIEIQSNLRHPNVLQLYGHFHDSKRIFLILEFAGKGELYKHLRKA-- 214
                  6899***********99988....89999******6654433323899999********************************************8.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE....EEHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk....ftsksDvWsf 191
                   ++  ++  ++++q+A +++yL+sk+++Hrd+   N+L+  +  +kisDfG + +       +++++    + +++pE++k ++    + ++ D Ws 
   KKY21147.1 215 GRFPESKAAQYIAQMATALRYLHSKHVIHRDIKPENILVGIHGEIKISDFGWSVHA----PNNRRNTLCGTLDYLPPEMVKPGRlenfYDENVDLWSL 308
                  99**************************************************9988....4445566777899*******988888889********* PP

                  HHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHH CS
  Pkinase_Tyr 192 GvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelm 238
                  Gvl++E +  ge p+++   ++   +  ++++++ p+ +++e ++l+
   KKY21147.1 309 GVLMYEFLV-GEAPFEDTPVMTH--RRIARREMTIPSFISAEATDLL 352
                  ******998.*****99876553..3334455666666666666655 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.8   3.7e+03      30      62 ..      14      49 ..       9      52 .. 0.61
   2 ?   -0.3   0.0      0.27   5.4e+02      17      46 ..     125     154 ..     122     180 .. 0.81
   3 !   23.1   0.0   1.9e-08   3.9e-05     139     251 ..     217     323 ..     203     345 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.8
  Kinase-like 30 evkdqetge...plavkvfllpseaskkdlerlkeq 62
                  v+d+e  +   p++v   +l  + s+ +l +l+ q
   KKY21147.1 14 SVTDEEEDQkakPVKVSTTTLSHNRSRPNLVKLHPQ 49
                 567776554111445555555668888888888765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.27
  Kinase-like  17 gellkkgdrsvvfevkdqetgeplavkvfl 46 
                  g+ l+kg+++ v++v++ e g   a+kv  
   KKY21147.1 125 GKALGKGKFGRVYLVREREHGFVCALKVLH 154
                  57799**************99998888865 PP

  == domain 3  score: 23.1 bits;  conditional E-value: 1.9e-08
  Kinase-like 139 kkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekg..faPpEllgsrggytrknktkmthkldaW 234
                  +++ + a +++ +q+     +L++k ++h +++++n+l   +g +++ +f+  v a ++ + ++ + +  + PpE++   g+     +  +  ++d W
   KKY21147.1 217 FPESK-AAQYI-AQMATALRYLHSKHVIHRDIKPENILVGIHGEIKISDFGWSVHAPNNRR-NTLCGTldYLPPEMVKP-GR----LENFYDENVDLW 306
                  44444.44555.68888999*****************************************.9999652277****988.44....45678889**** PP

  Kinase-like 235 qlGlviyriwclklPlt 251
                   lG+ +y     ++P++
   KKY21147.1 307 SLGVLMYEFLVGEAPFE 323
                  *******9999999986 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1     2e-07    0.0004      98     163 ..     200     261 ..     188     276 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2e-07
         Kdo  98 rlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwl 163
                 + +g  +L ++l+k  +++e++ ++ + + +++ + lh+ +v H+d+ + nil+  ++    ei +
  KKY21147.1 200 EFAGKGELYKHLRKAGRFPESKAAQYIAQMATALRYLHSKHVIHRDIKPENILVGIHG----EIKI 261
                 567778899999997779***********************************98887....4444 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.2e-06     0.012      78     158 ..     192     273 ..     140     279 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.2e-06
                 EETTEEEEE--EETTEEGGBHHHCG-..HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GTTEEETTST CS
        RIO1  78 lkrhvlvmefigedgvaapklkdvee..eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvsQaveldhp 158
                  kr  l++ef g +g  +++l+++ +  e++a+++ +++  ++ + ++  +++H D+   N+lv    ++ i D++ +v++ ++
  KKY21147.1 192 SKRIFLILEFAG-KGELYKHLRKAGRfpESKAAQYIAQMATAL-RYLHSKHVIHRDIKPENILVGIHgEIKISDFGWSVHAPNN 273
                 4566799*****.999999****99556777777777777755.55569***************98889******999987665 PP

>> YrbL-PhoP_reg  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.99     2e+03      23      68 ..      22      65 ..       9      99 .. 0.60
   2 ?   12.0   0.0   5.5e-05      0.11     121     155 ..     222     256 ..     184     263 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.99
  YrbL-PhoP_reg 23 dsakliKvvkpeeiaarrrrkrllkqlqrekkykqilrElkeyvql 68
                   ++ak +Kv       +++r +  l +l++++++++    +  ++ +
     KKY21147.1 22 QKAKPVKVSTTTL--SHNRSRPNLVKLHPQSQKQNASGPIVVHAVQ 65
                   4555566655554..5556666666666666666555555544444 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 5.5e-05
  YrbL-PhoP_reg 121 taelkeaLdefleelldnhivtndlsakNivvkkn 155
                    +a++  ++ + l++l   h++ +d++++Ni+v+ +
     KKY21147.1 222 AAQYIAQMATALRYLHSKHVIHRDIKPENILVGIH 256
                    34888999999********************9865 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       0.6   1.2e+03      25      56 ..     123     156 ..     112     192 .. 0.72
   2 ?   10.8   0.0   0.00014      0.28     170     206 ..     218     254 ..     209     267 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.6
        FTA2  25 efleyLgkglhsiVlkvkirgk..eYALKlFrfl 56 
                 e+ + Lgkg  ++V+ v+ r++  + ALK+  + 
  KKY21147.1 123 EIGKALGKGKFGRVYLVREREHgfVCALKVLHKS 156
                 6667899999999999999988555578876554 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00014
        FTA2 170 qeelevsqlpkllrdlkklhklgIvvrDlkeenyidg 206
                 +e++  +++ ++   l+ lh+ ++++rD+k+en++ g
  KKY21147.1 218 PESKAAQYIAQMATALRYLHSKHVIHRDIKPENILVG 254
                 567788999************************9865 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.5      0.12   2.4e+02      13      46 ..      28      61 ..      22     148 .. 0.72
   2 ?   11.0   0.1   7.6e-05      0.15     168     254 ..     174     267 ..     143     284 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.12
  Haspin_kinase 13 rssqsslkhktshssLqkfsssssessssnkisl 46
                   ++s++ l+h  s+  L k++ +s++++ s  i  
     KKY21147.1 28 KVSTTTLSHNRSRPNLVKLHPQSQKQNASGPIVV 61
                   5788999999999999999777776665554433 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 7.6e-05
  Haspin_kinase 168 qdkvlkek.....pdfyseqqlflvlllkdkGtdLeev....klkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlkls 254
                    q+++ + +       f +++++fl+l++  kG+  +++    ++ +  +a +   q+++ L    +k    HRd++ +niLv  ++++ + d+  s
     KKY21147.1 174 QSNLRHPNvlqlyGHFHDSKRIFLILEFAGKGELYKHLrkagRFPES-KAAQYIAQMATALRYLHSKH-VIHRDIKPENILVGIHGEIKISDFGWS 267
                    3333333366666789999*************988887633334444.44455569999999999996.56*********************9876 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   6.7    0.0069        14     308     341 ..     222     254 ..       3     296 .. 0.58

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0069
  Pkinase_fungal 308 llealrDaIkghrsLflkagiLHrDiSenNilit 341
                     + + +++  +++r L+  + ++HrDi  +Nil+ 
      KKY21147.1 222 AAQYIAQMATALRYLH-SKHVIHRDIKPENILVG 254
                     45667888899*****.9**************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 2323.50
//
Query:       KKY21148.1  [L=206]
Description: putative 50s ribosomal protein l4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-24   85.2   0.0    6.4e-24   84.7   0.0    1.2  1  Ribosomal_L4  Ribosomal protein L4/L1 family


Domain annotation for each model (and alignments):
>> Ribosomal_L4  Ribosomal protein L4/L1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   3.6e-28   6.4e-24      54     189 ..       6     144 ..       2     147 .. 0.90

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 3.6e-28
                   SSS---S-TTSTTSTT---SS---S.EEHHHHHHHHHHHHHHHHHHHHHHHTT-EEEES--.-.-S.S--HHHHHHHHHHTT-...TTSSEEEEESS CS
  Ribosomal_L4  54 tGrARvgsirspiargGgvahgpkperdystklnkKvrrlAlrsaLsakakqglllvvdnl.eple.esktkelvellkklgl...ksksvLivvse 145
                   tG+ARvg+ +sp++rgGgva+gp+p rd+st+lnkK +  A r+aLs ++++g+l+v+dn  + ++ ++    l +l+ + ++     +s+L+++++
    KKY21148.1   6 TGKARVGDKKSPVRRGGGVAFGPHP-RDFSTELNKKIYDIAWRTALSYRYRKGELVVIDNTiS-VPwKATPHLLNNLFTSHNWgqgYGRSTLVTLNA 100
                   9***********************9.*********************************8645.6634555667788899999777788******97 PP

                   SSCHHHHHHTT-TTE.EEEESTT--CHHHHHSSEEEEEHHHHHHH CS
  Ribosomal_L4 146 kdenlvlaarnlpgv.evieveslnvydllkadkvvitksavekl 189
                    +e l   ++ l +   v ++ +++v dll+  +++i+k a++ l
    KKY21148.1 101 -RERLNDHMEDLGHHgVVKDLFDVDVKDLLETGRIIIEKFALDAL 144
                   .***********99955667999******************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1549  (0.0863963); expected 358.6 (0.02)
Passed bias filter:                      822  (0.0458475); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1490.22
//
Query:       KKY21149.1  [L=742]
Description: putative trapp complex protein trs85 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.6e-109  365.9   0.0   4.9e-109  365.0   0.0    1.4  2  TRAPPC-Trs85  ER-Golgi trafficking TRAPP I complex 85 kDa sub
  ------ inclusion threshold ------
      0.045   14.0   0.9       0.13   12.5   0.9    1.8  1  Mastoparan_2  Mastoparan peptide
        0.2   11.0   1.2         11    5.3   0.1    2.4  2  SNAP          Soluble NSF attachment protein, SNAP


Domain annotation for each model (and alignments):
>> TRAPPC-Trs85  ER-Golgi trafficking TRAPP I complex 85 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0      0.81   4.9e+03     163     185 ..     115     136 ..      80     153 .. 0.76
   2 !  365.0   0.0  8.2e-113  4.9e-109       2     396 ..     258     648 ..     257     655 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 0.81
  TRAPPC-Trs85 163 neqiaqsRkgltgkLfsaskklf 185
                   ++++a +Rkg++  +  + + + 
    KKY21149.1 115 TDELA-KRKGFRHGFTELIRPFG 136
                   56666.99999999998888765 PP

  == domain 2  score: 365.0 bits;  conditional E-value: 8.2e-113
  TRAPPC-Trs85   2 dpleslrkllqefsnlqsslpnspkwlnpdvlryyvllhDeseeeeskaeallekikktlglecalLpinSrsgssaasaessssadsaeeadesep 98 
                   +p+eslr+l+ ++s+ ++ l   p+w np++lryyvl+hDe++++  k++al++++k+++gl+c++L++        ++++   +ad   +++++ +
    KKY21149.1 258 SPIESLRQLYMQTSQGSKVL---PPWGNPEYLRYYVLVHDEDRDDLAKSNALFDQMKRHFGLHCHMLRL-------RSVQAVLPEADIVPTVQCE-W 343
                   79****************88...9*********************************************.......4455666666666666666.9 PP

  TRAPPC-Trs85  99 lsaaeeaaslsqsesssleedlssestshgalLslsdvdsirafirelvvqslipfmerkirqlneqiaqsRkgltgkLfsaskklf........gs 187
                   l+ +e+  +++++ +           ++++ ++++sd ++i++f+relv+qs++p+me++i+++neq+a++R+gl+g+++s+sk+++        +s
    KKY21149.1 344 LTPSEDLNRIRKPHDLMD-------VEKSEPHIFESDGAAIKTFVRELVAQSVVPHMENRIALWNEQVASRRRGLSGRFMSISKRWTgfgssrnvSS 433
                   999999999999988877.......47899****************************************************************988 PP

  TRAPPC-Trs85 188 skpssssasssynaasayYsasspElqlRkLADlafmlrdyklAystYeslkkDfknDkawkylAgalEmaavslllsgqqlstkkkndeidpylen 284
                    +++s ++s++y++ +++Y a++pE++lRk+AD++fmlrdyklA+stY++l++Df+nDkaw+ylAga+Em+ +s ll      +k k +++d++le+
    KKY21149.1 434 LTSGSGGTSGNYDSLQGFYGAEAPEAILRKMADYSFMLRDYKLAASTYDMLRSDFNNDKAWRYLAGANEMCVISNLLNPLAAASKIKVENLDQMLET 530
                   889999*************************************************************************88888889********** PP

  TRAPPC-Trs85 285 alqtyekrcsaklyalRcallsaelllslsd........yseaaletllkltselddaavrsalllEqaalcflqr.....sagltrrRKaafhmvl 368
                   a ++y++rcs ++  lRc+ + +ell+++s+        ++ + le    l      ++v ++l  E++a cf        s +  r+RKaaf++v+
    KKY21149.1 531 ATYSYLTRCSDPHNTLRCIAICVELLRTRSKggaqlsakWAIRVLE----L---NLMGSVGRTLASERVAACFMAHigsgpSGWGSRQRKAAFWYVM 620
                   ******************************9977643333333333....2...222479*************999****99*************** PP

  TRAPPC-Trs85 369 Aahryskagqkrqalrclkqalsvykgk 396
                   Aa+++ k+g+   a  cl+qa   yk++
    KKY21149.1 621 AAEAWLKLGKATVAALCLEQADWLYKNV 648
                   **********************999875 PP

>> Mastoparan_2  Mastoparan peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.9   2.1e-05      0.13       3      14 .]     625     636 ..     624     636 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.1e-05
  Mastoparan_2   3 WLKLGKkVidiL 14 
                   WLKLGK+ +++L
    KKY21149.1 625 WLKLGKATVAAL 636
                   *********998 PP

>> SNAP  Soluble NSF attachment protein, SNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2    0.0048        28     156     194 ..     459     497 ..     450     537 .. 0.79
   2 ?    5.3   0.1    0.0018        11      52      94 ..     612     654 ..     608     701 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0048
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-TTTGGG CS
        SNAP 156 kcllkvAelsaelekyekAieiyekvakkslennllkys 194
                  +l k+A++s  l++y+ A+  y+ + ++  + +  +y 
  KKY21149.1 459 AILRKMADYSFMLRDYKLAASTYDMLRSDFNNDKAWRYL 497
                 6789********************999998888887774 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-HHHHH CS
        SNAP  52 eeAgeaflkaAecqeklkekdeaanayveAakcykkvspeeAv 94 
                 ++A+  +++aAe+  kl++++ aa ++ +A   yk+vs++e v
  KKY21149.1 612 RKAAFWYVMAAEAWLKLGKATVAALCLEQADWLYKNVSKSEHV 654
                 79999******************************99666543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 4953.89
//
Query:       KKY21150.1  [L=569]
Description: hypothetical protein UCRPC4_g03846 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.4e-176  584.7   0.0   1.1e-175  584.5   0.0    1.0  1  Glyco_hydro_125  Metal-independent alpha-mannosidase (GH125)


Domain annotation for each model (and alignments):
>> Glyco_hydro_125  Metal-independent alpha-mannosidase (GH125)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  584.5   0.0  6.1e-180  1.1e-175       1     416 []     110     545 ..     110     545 .. 0.98

  Alignments for each domain:
  == domain 1  score: 584.5 bits;  conditional E-value: 6.1e-180
                      SHHHHHHHHHHHHHHHHHTEEEETT.....................EEEE--BSS-SEEHHHHHHHHGGGGGGTTTSGGGHHHHHHHHHHHHHH CS
  Glyco_hydro_125   1 dpdlarlfenafpntldttvkwkeka...................eltfvitGDidamWlRDsanqlasYlpllkedeklaslirgvinlqary 75 
                      d+dla++f+nafpntldttv+w+++                    +++f++tGDi+a+WlRDs+nqla+Y++l+++d++l+sli g+in+qa+y
       KKY21150.1 110 DHDLAQIFSNAFPNTLDTTVRWHTDGsstktprglsekdkkrwkgAQSFIVTGDINAEWLRDSTNQLAQYQRLANKDAALQSLILGAINTQAEY 203
                      89***********************99******************************************************************* PP

                      HHH-TT-SEE-..SS...SS---SS..--BS-TT.....EEE----HHHHHHHHHHHHHHHHHH---TT--HHHHHHHHHHHHHHHHGG..... CS
  Glyco_hydro_125  76 ilispYanaFqppeesglkkteneaaqkdkvepeydeelvfeckyelDSlaaflqlsseyyeatgdleffeekwvkaveaildvleeqqegtyd 169
                      +++spY+naFqpp+ sgl++t+n+++  d v+p+y+++ vfeckyelDSla+fl+l++++y++tg++ f+++++++a++++l+vl+eq+egt++
       KKY21150.1 204 VIESPYCNAFQPPPPSGLQATDNGMQ--DVVHPAYEPSFVFECKYELDSLAHFLSLANQFYNHTGSTVFLDDRFYTALNELLHVLDEQSEGTFN 295
                      ***********************964..9***************************************************************** PP

                      ..GHHH.H-----B-SSSSGGGS-HHHHT-S----.SSS---SB-TTS-B-SSSEEHHHHHHHHHHHHHHHHHHHHTS--....HHHHHHHHHH CS
  Glyco_hydro_125 170 edgkkvlksaYtfqretnratetlsneglGnpvkentGlvrsaFRpSDDatifqflipaNmmlaveLeklaeileklaeke...lakearklak 260
                      +++ + ++s+Ytf+r++  +tetl+ +g+Gnp++++tGl+rsaFRpSDDatif+++ipaN+m++veL+++  +l++    +   lak++ + a+
       KKY21150.1 296 NKTGQYHRSTYTFKRHAWLGTETLNLDGIGNPLASGTGLIRSAFRPSDDATIFGYFIPANAMMSVELRRTGLMLQASGGPSkqtLAKNLLDRAS 389
                      ***********************************************************************9999887655678********** PP

                      HHHHHHHHHSEEEETTTEEEE-SEE-SSS-EE----SSSS-STTHHHHTSS-TT-HHHHHHHHHHTST.TSTTEEE-SS-EEE--TTS-TTEEE CS
  Glyco_hydro_125 261 eiregiekhavvehkkfgkiyAyEvDGyGsallmDDanvPsLLslpllgyvkkddevYqnTrkfvlsk.anpYflkGkalsgiGgphvglgkaW 353
                      +++++i +h++++h+ +g+++AyEvDGyGs+l mDDan+PsLLslpllg+v++++++YqnTr+++ls+  npY+l+G++++giGgph+g+++aW
       KKY21150.1 390 ALEAAIFTHGTYTHPVYGEVFAYEVDGYGSQLSMDDANIPSLLSLPLLGFVESSSKIYQNTRSMILSRqGNPYYLSGSNFHGIGGPHIGVENAW 483
                      *******************************************************************999************************ PP

                      HHHHHHHHHT---HHHHHHHHHHHHHTSTTSSS--SEEETTEEEEES-S-BHHHHHHHHHHHH CS
  Glyco_hydro_125 354 pmalivqaltsdddeeiaellklllkstaglglvhEsvnvdnekkftRswFawanslfgelil 416
                      pm+l+vqa+ts+d++ei ++l++++++++ lglvhEs++v+++ ++tRswFawan++f+++il
       KKY21150.1 484 PMSLLVQAMTSSDSTEILKCLNVVKEASR-LGLVHESIHVNRAGEYTRSWFAWANAVFAQTIL 545
                      **********************9999886.*******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3977.00
//
Query:       KKY21151.1  [L=491]
Description: putative dna polymerase delta subunit 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-54  185.9  38.7    1.5e-31  110.2  14.8    2.1  2  CDC27     DNA polymerase subunit Cdc27


Domain annotation for each model (and alignments):
>> CDC27  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2  14.8   8.6e-36   1.5e-31      22     320 ..       1     312 [.       1     342 [. 0.74
   2 !   80.5  17.3   9.1e-27   1.6e-22     304     426 ..     345     490 ..     327     490 .. 0.64

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 8.6e-36
       CDC27  22 mLyefveskkkkksaqlhaTYlvsGrkaqneetask....................................ivLvreedLeeakskletvtSvhiYsv 84 
                 mL +f+e++++kk  ++ha Yl++G+k++++    +                                    i+L+reedLe++    +  +S     v
  KKY21151.1   1 MLFDFYERENSKKRGSVHAMYLIAGTKKSANAPTLNghtngggddinpsspimsssmpqpvedeephvpvktIILAREEDLEGMATAATMGSSTNRKQV 99 
                 9******************************88888**************************************************9999999976665 PP

       CDC27  85 .qkallkDsnvLydvdydilkenkkndskdslirgaqagpivnkevkraeelgrpplaa...paseakektangkkpkaakekaaketssakseskkks 179
                  + + ++D+ +L++v ++i ++   + ++d+l++ +++g i+n+ vkr++++ +ppl+a   p++++k++++ +k    + +k +++ s+a+  ++k +
  KKY21151.1 100 lEVGQIQDLQSLTEVGREIFAT--TFVKEDPLEHYKKYGIIQNRFVKRRTGV-KPPLPAvtvPTQPEKKAATAAK----PDSKPQPSLSTASGPFAKSA 191
                 355789****************..9*************************98.5555551114444444333333....34555555556665555555 PP

       CDC27 180 aekskdaskettkekaekaasskaaslkkkasaksnimksffkakpaekkkkteakeqkveeeseeekekedkeleddsaaeeeeeeekstkkekrrqk 278
                 + k +d++   +  +a++a s k+a lk+   ++s+i+ksf+ka+p+e++++  a + +++ +          +++dd++  ee+ee+ + ++ + r+ 
  KKY21151.1 192 TLKRTDSQDS-NRTAATTASSTKPATLKR---DASSIFKSFAKAPPKEESQEDTAMKDAPNFS----------DNDDDDD--EEQEEAMFLDT-GERTS 273
                 5555555555.5555555999*******9...*************998887554444332222..........2233333..45555666666.22444 PP

       CDC27 279 klessdeeeeerekekekrkrlkkmmeDededdemedvpesp 320
                  +   + +++ re++ e+ ++l+kmmeD+de+de + +++  
  KKY21151.1 274 SG---KTSSKSREEREERARKLRKMMEDSDEEDEKHNTGPAK 312
                 44...44456677888999***********999544443322 PP

  == domain 2  score: 80.5 bits;  conditional E-value: 9.1e-27
       CDC27 304 meDededdemedvpespvateeeetseppvllkeevekeevtesgd.........grrRkrrkVlKkktikDeeGylVtekvyewESfsedEeep.... 389
                 +++ed + e    pe+  + + ++ts        ++e+++ t+++          +rrR rrkV+Kk t+kDeeGylVt+++ +wESfsed++ p    
  KKY21151.1 345 EQTEDAETEWPSSPEPEPEPKSKRTSY-------DQEPSSTTTTTTttttnaeqpRRRRARRKVMKKRTMKDEEGYLVTKEEAVWESFSEDDDLPapps 436
                 333333333333333333333333333.......333333322222335566789*************************************9966677 PP

       CDC27 390 ...pvkkkpaeskkasaaa..............akkakapkkkkQssimSFFgk 426
                    ++kkk   +kk++a                a+k+k++ + + ++imSFF+k
  KKY21151.1 437 rqqQQKKKFGAEKKENAGTaaagevekkkggntAAKGKSGGGGGGGNIMSFFKK 490
                 77733333333333322223467878777777777777999***********65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1745  (0.0973284); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.09u 0.42s 00:00:01.51 Elapsed: 00:00:00.55
# Mc/sec: 2711.06
//
Query:       KKY21152.1  [L=150]
Description: hypothetical protein UCRPC4_g03848 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0083   15.9   0.0       0.15   11.8   0.0    2.0  2  DUF1572   Protein of unknown function (DUF1572)


Domain annotation for each model (and alignments):
>> DUF1572  Protein of unknown function (DUF1572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.3   0.0    0.0074   1.3e+02      69     105 ..      40      77 ..      17      86 .. 0.78
   2 !   11.8   0.0   8.4e-06      0.15      32      69 ..     113     147 ..      93     149 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.0074
     DUF1572  69 kpdRnRDaefedalkskeell.eaweeGWelllsalds 105
                 ++ R R+  f+ a+   + l+ ++ e+ W l+++a+++
  KKY21152.1  40 NEGRLRNIVFDTAFLAVKALMpRCAEKQWVLIFKAVND 77 
                 45788999999998887777647899********9985 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 8.4e-06
     DUF1572  32 elataleeeansiavivkhlsgnlrsRWtdfltsdGek 69 
                 + +++++ ++nsia +v hl+   +sR ++++ s+Ge 
  KKY21152.1 113 AQMWQIQVNENSIAHVVDHLT---TSRLANYQLSNGEG 147
                 457899999***********8...69999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 981.47
//
Query:       KKY21153.1  [L=1169]
Description: putative dna polymerase gamma [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.9e-105  352.1   0.0   3.8e-105  351.1   0.0    1.5  1  DNApol_Exo      DNA mitochondrial polymerase exonuclease doma
    5.3e-55  187.0   0.0      1e-54  186.0   0.0    1.4  1  DNA_pol_A       DNA polymerase family A
  ------ inclusion threshold ------
      0.088   12.5   0.0       0.77    9.4   0.0    2.2  1  DNA_pol_A_exo1  3'-5' exonuclease


Domain annotation for each model (and alignments):
>> DNApol_Exo  DNA mitochondrial polymerase exonuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.1   0.0  6.3e-109  3.8e-105       2     282 .]     115     394 ..     114     394 .. 0.95

  Alignments for each domain:
  == domain 1  score: 351.1 bits;  conditional E-value: 6.3e-109
  DNApol_Exo   2 evefklPkLegenieeHfrklgekqaepylslaeelaeaelpeipekwalksGWtrYekdksaesvdyPeeealvfDvevlvkesklpvlAvavsekaW 100
                 ++ f+lP+L+g++++eHf+klg + + py ++a++++ ++lp+ p+kw  +sGW++Y+ d+++e++d+P+ee l+fD+ev+ kes+++v+A+a+s++aW
  KKY21153.1 115 PIAFDLPPLQGTTMDEHFYKLGMEASDPYFQYAKDFVWSNLPDRPRKWLRQSGWVKYNVDGTTEKIDAPQEELLTFDTEVMWKESSFAVMACAASPTAW 213
                 689************************************************************************************************ PP

  DNApol_Exo 101 YsWvSprlleeseeeeklelkeLiplesskkervvvGhnvsyDRarikeeYslessktrflDTmsLhvavsGltsqqralwlkarkekkkkekaaeeee 199
                 Y+W+Sp+ll+e++     + ++Lipl++++k+r++vGhn++yDRari+eeY l++sk++flDTmsLhvav+G++sqqr++w+k++k+++ +++ a+e++
  KKY21153.1 214 YAWLSPWLLGETD-----NDRQLIPLGNPSKPRIIVGHNIGYDRARIAEEYDLQQSKNFFLDTMSLHVAVNGMCSQQRPTWMKHKKNRDLRDRIASEKN 307
                 *************.....89******************************************************************9998887776543 PP

  DNApol_Exo 200 eeee....kkeeeseeeekewkevsslnsLadvaklycgieldKekrdlfvketleeirenfqelleYcakDveathevfkkllpkF 282
                 + e     +++  seeee+ w+ +ss+nsL+dvak++cg ++dK++rd+f + + e i ++++ell+Yca Dv++th+v+++++p+F
  KKY21153.1 308 SVELqtllENKLLSEEEEELWVGRSSINSLRDVAKFHCGVTIDKSQRDYFGELDREGIVTRLEELLDYCAADVAITHRVYQRVFPAF 394
                 33223454555566777788*****************************************************************99 PP

>> DNA_pol_A  DNA polymerase family A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.0   0.0   1.8e-58     1e-54      70     370 ..     598     959 ..     584     962 .. 0.89

  Alignments for each domain:
  == domain 1  score: 186.0 bits;  conditional E-value: 1.8e-58
                 .CHHHHHHHHHHHHHHHHHT..TTTGGGCC.....BTT.TSEE--EEE........SSSSSSSS-EEESS-GGGS-TTS..............CCHHHH CS
   DNA_pol_A  70 hplaklileyrelsklksty..vdallkli.....nkk.tgrihtsfn........qtvtatGrlsssepnlqnipirt..............eegrri 138
                 +plak +l+y+  ++l+s++  ++++l+++     + + ++ri ++++        + +++ G ++++ +++++i  r+                g ++
  KKY21153.1 598 NPLAKGYLQYFLSGTLSSQFelAREALEMNascsyWISaRDRIRSQLVvyqkdrlqDSESTQGFILPQVIPMGTITRRAventwltasnakanRVGSEL 696
                 79****************877799*****9*****888799**************7777888*************745577777777665443444477 PP

                 HHTBCG.TTCCEEEEEEETTHHHHHHHHHCT.HHHH....HHH........HT.TH-HHHHHHHHHCTS.GGGHHHHHHHHHHHHHHHHHTT--HHHHH CS
   DNA_pol_A 139 RkafvaeegghvllsaDysqiELRilAhlsgdekli....eaf........ke.geDiHsktAsevfgvpveevtkeqRrqaKainfGiiYGagakgLa 224
                 +++++a++g++ +++aD+++ EL+i A+++gd+ +     +a+        k+ g+D+HsktA+ ++++         R++aK++n+G+iYGag k++a
  KKY21153.1 697 KAMIKAPPGYS-FVGADVDSEELWI-ASVIGDSVFKlhggNAIgfmtlegtKAaGTDLHSKTANILGIS---------RNDAKVFNYGRIYGAGLKFAA 784
                 ********766.*************.**********999966677888888555*************99.........********************* PP

                 HHHT.....SSHHHHHHHHHHHHHHSHHHH.................HHHHHHHHHCCCE.CCEEETTCSEEEECTTT-CCHCCCHHHHHHHHHHHHHH CS
   DNA_pol_A 225 eqlg.....iseeeAkefiekyferypgvk.................syleetleeakek.gyvetllgrrrylpeiksknaalrekaeraavNapiQG 300
                 + l+     ++e+++ e++ek++++++gvk                 s+++++lee++++ ++++++lg  ++   +  +++ +r + +++++N++iQ+
  KKY21153.1 785 TLLRqfnptLTEKQTTEIAEKLYRETKGVKtnrkvlsdtgfwrggteSFVFNKLEEFADQeKPRTPVLGAGITE-AL-MRRFINRGAFMTSRINWAIQS 881
                 ***5456779********************************************9999988***********88.44.4566777888*********** PP

                 HHHHHHHHHHHHHHHHHHHTT-SEEEEEEETTEEEEEEECCCHHHHH......HHHHHHHHHHHHS...SS--EEEEEE CS
   DNA_pol_A 301 sAaDiiklamikieealkeeklkarlllqvHDElvfevpeeeveeva......elvkeamesavel...dvplkvevkv 370
                 s++D+++l++ ++++++++  l+arl ++vHDE+++ v++++++++a      +++++am  ++++   d+p+++++++
  KKY21153.1 882 SGVDYLHLLITSMDYLIRSFSLDARLAITVHDEIRYLVRDSDKYKAAmalqvaNIWTRAM-FSQQIgidDLPQSCAYFS 959
                 **********************************************9999999*******.333324569999998775 PP

>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00013      0.77     105     170 ..     312     389 ..     187     392 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00013
                     EHHHHHHHTTHSTT.........SSHHHHHHHHHSB---GHCCTTSSTTT....SSS-HHHHHHHHHHHHHTHHHHHHH CS
  DNA_pol_A_exo1 105 dtmlaayvldyers.........hsLdsLaekylgdleldkeeqiakwqk....arplleeqllYAaeDadvllrlfkk 170
                      t l +++l+ e++          sL + a+  +g +++dk++  + +          lee l Y+a+D+ +++r++++
      KKY21153.1 312 QTLLENKLLSEEEEelwvgrssiNSLRDVAKFHCG-VTIDKSQRDYFGELdregIVTRLEELLDYCAADVAITHRVYQR 389
                     45666777777777888888888899999999999.77766654433333448888889*****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.50
# Mc/sec: 7069.52
//
Query:       KKY21154.1  [L=416]
Description: putative c3hc4 type (ring finger) zinc finger containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-05   24.8  13.2      0.013   15.3   2.5    3.3  3  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    4.1e-05   23.8  11.3       0.07   13.5   1.5    2.6  2  zf-RING_2     Ring finger domain
    0.00038   20.4   8.9      0.039   14.0   5.3    3.4  2  zf-RING_UBOX  RING-type zinc-finger
     0.0011   18.9   5.7     0.0011   18.8   0.9    2.3  2  zf-RING_5     zinc-RING finger domain
     0.0022   17.8   8.8      0.027   14.3   1.5    2.5  2  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
     0.0056   16.5   9.5      0.014   15.3   2.0    2.6  2  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
      0.006   16.7  11.4       0.13   12.4   0.7    3.1  3  zf-C3HC4_4    zinc finger of C3HC4-type, RING
  ------ inclusion threshold ------
      0.022   14.6   6.3       0.49   10.3   3.9    2.8  2  Prok-RING_4   Prokaryotic RING finger family 4
       0.48   10.7   4.6       0.65   10.3   0.1    2.7  3  CTU2          Cytoplasmic tRNA 2-thiolation protein 2
        4.4    7.0   7.5         16    5.2   3.9    3.0  2  zf-P11        P-11 zinc finger


Domain annotation for each model (and alignments):
>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   2.5   7.3e-06     0.013       1      19 [.     279     296 ..     279     316 .. 0.79
   2 !    9.8   2.8   0.00039      0.69      18      34 ..     324     340 ..     304     343 .. 0.80
   3 ?    3.9   0.1     0.028        50      31      40 .]     350     359 ..     347     359 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.3e-06
  zf-C3HC4_2   1 kCpiCldmlkdpsvvtpCg 19 
                 kCpiC+d+l+d+ ++t Cg
  KKY21154.1 279 KCPICMDVLEDA-TSTVCG 296
                 7**********9.999997 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00039
  zf-C3HC4_2  18 CgHvfCqkCilrsLeek 34 
                  gH fC kCi+ +L+++
  KKY21154.1 324 IGHLFCHKCIMDTLKSS 340
                 59***********9986 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.028
  zf-C3HC4_2  31 LeekneCPlC 40 
                 +++k +CP+C
  KKY21154.1 350 WKAKGRCPIC 359
                 78899***** PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   1.5   3.9e-05      0.07       2      32 ..     279     308 ..     278     321 .. 0.82
   2 !   13.2   4.5   4.6e-05     0.083      22      44 .]     325     360 ..     311     360 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.9e-05
   zf-RING_2   2 eCpICleelssadsvlllpCgH.v.fhreCler 32 
                 +CpIC++ l++a s++   Cg  v  h +C+  
  KKY21154.1 279 KCPICMDVLEDATSTV---CGTfVsLHGSCAIA 308
                 7********9888888...**85358****865 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4.6e-05
   zf-RING_2  22 gHvfhreClerwlrssst.............CPlCr 44 
                 gH f+++C+++ l+ss+              CP+Cr
  KKY21154.1 325 GHLFCHKCIMDTLKSSEFqrsddivwkakgrCPICR 360
                 7********99888777788999************9 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   5.3   2.2e-05     0.039       1      30 [.     280     338 ..     280     348 .. 0.80
   2 ?    2.6   0.1      0.08   1.4e+02       1       8 [.     356     363 ..     356     374 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.2e-05
  zf-RING_UBOX   1 CpIClelft...........................dP....lvlpCGHtFCreCl..welsk 30 
                   CpIC+++++                           +P    ++   GH FC++C+  +   k
    KKY21154.1 280 CPICMDVLEdatstvcgtfvslhgscaiallplcleHPwliqVL--IGHLFCHKCImdT--LK 338
                   *********9********************99999988866422..6*********431..22 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.08
  zf-RING_UBOX   1 CpIClelf 8  
                   CpIC+ ++
    KKY21154.1 356 CPICRKPL 363
                   ****9876 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.3      0.11     2e+02      37      42 ..     278     283 ..     271     306 .. 0.76
   2 !   18.8   0.9   6.4e-07    0.0011      21      44 .]     325     361 ..     325     361 .. 0.97

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.11
   zf-RING_5  37 avCpiC 42 
                 ++CpiC
  KKY21154.1 278 YKCPIC 283
                 566666 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 6.4e-07
   zf-RING_5  21 gHifCekClkkll.............ekeavCpiCrk 44 
                 gH fC+kC++  l             +++ +CpiCrk
  KKY21154.1 325 GHLFCHKCIMDTLkssefqrsddivwKAKGRCPICRK 361
                 7**********************************97 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.9    0.0023       4.1       1      18 [.     280     296 ..     280     306 .. 0.92
   2 !   14.3   1.5   1.5e-05     0.027      18      41 .]     325     359 ..     311     362 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0023
                 -TTT-S--SS-E.E-TTS CS
    zf-C3HC4   1 CpiCleeakepnelleCk 18 
                 CpiC++++++++ ++ C+
  KKY21154.1 280 CPICMDVLEDAT-STVCG 296
                 ***********9.99996 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.5e-05
                 S--B-CHHHHHHHHC...........TSSB--TTT CS
    zf-C3HC4  18 kHsfCskCirkilks...........rkkvkCPlC 41 
                 +H fC+kCi   lks           + k  CP+C
  KKY21154.1 325 GHLFCHKCIMDTLKSsefqrsddivwKAKGRCPIC 359
                 7**************9******999988888***9 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   1.8     0.021        38       3      22 ..     278     297 ..     276     314 .. 0.77
   2 !   15.3   2.0   7.6e-06     0.014      20      47 ..     324     363 ..     311     366 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.021
                 SB-TTTSSSBS-EEETTEEE CS
  zf-C3HC4_3   3 eeCviClerprnvvllpCgH 22 
                  +C+iC++  ++++   Cg 
  KKY21154.1 278 YKCPICMDVLEDATSTVCGT 297
                 68999999988888888874 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 7.6e-06
                 EEEEEE-HHHHHHHHH.............TT-B-TTT--B- CS
  zf-C3HC4_3  20 CgHlvlCeeCaekllk.............rkkkCpiCrrpi 47 
                  gHl +C++C  + lk              k +CpiCr+p 
  KKY21154.1 324 IGHL-FCHKCIMDTLKssefqrsddivwkAKGRCPICRKPL 363
                 69**.******999999***********99*********96 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.7   7.3e-05      0.13       1      19 [.     280     298 ..     280     308 .. 0.90
   2 !    6.5   4.5    0.0052       9.3      16      33 ..     324     341 ..     311     359 .. 0.70
   3 ?   -0.2   0.3      0.63   1.1e+03       1       5 [.     356     360 ..     356     363 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.3e-05
  zf-C3HC4_4   1 CPiCldYLekPvsleCGhs 19 
                 CPiC+d Le+ +s  CG  
  KKY21154.1 280 CPICMDVLEDATSTVCGTF 298
                 ****************975 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0052
  zf-C3HC4_4  16 CGhsfClsCisslqkepd 33 
                  Gh fC +Ci    k+++
  KKY21154.1 324 IGHLFCHKCIMDTLKSSE 341
                 59********99988775 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.63
  zf-C3HC4_4   1 CPiCl 5  
                 CPiC+
  KKY21154.1 356 CPICR 360
                 ****7 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.047        83      32      42 ..     279     289 ..     273     293 .. 0.75
   2 ?   10.3   3.9   0.00027      0.49      17      41 ..     325     364 ..     323     369 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.047
  Prok-RING_4  32 sCPlCqrrisk 42 
                   CP+C   +++
   KKY21154.1 279 KCPICMDVLED 289
                  7****876655 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00027
  Prok-RING_4  17 gHlvCkeCfdsk.dls..............sCPlCqrris 41 
                  gHl+C++C  ++ ++s              +CP+C++ + 
   KKY21154.1 325 GHLFCHKCIMDTlKSSefqrsddivwkakgRCPICRKPLI 364
                  8*******8777544466688999************9775 PP

>> CTU2  Cytoplasmic tRNA 2-thiolation protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       4.9   8.9e+03      86      86 ..     175     175 ..     154     202 .. 0.43
   2 ?    1.6   0.1      0.17   3.1e+02      41      58 ..     266     290 ..     233     307 .. 0.73
   3 ?   10.3   0.1   0.00036      0.65      38      79 ..     346     387 ..     324     411 .. 0.62

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.9
        CTU2  86 a 86 
                  
  KKY21154.1 175 F 175
                 1 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.17
        CTU2  41 e.......letsekCalCglplddk 58 
                 +       + ts kC++C+  l+d 
  KKY21154.1 266 AddgegrtVLTSYKCPICMDVLEDA 290
                 0444555577889999999877444 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00036
        CTU2  38 eeaeletsekCalCglplddkakewkrtitiselseteseee 79 
                 ++  ++++ +C++C+ pl +++k++k+++ i    e + +++
  KKY21154.1 346 DDIVWKAKGRCPICRKPLIRSDKADKTRTLIPLALELQVSTR 387
                 233499************666666665555443333333333 PP

>> zf-P11  P-11 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.19   3.4e+02      35      42 ..     277     284 ..     273     289 .. 0.80
   2 ?    5.2   3.9    0.0092        16      30      45 ..     348     363 ..     323     366 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.19
                 SSBETTTS CS
      zf-P11  35 serCpiCk 42 
                 s +CpiC 
  KKY21154.1 277 SYKCPICM 284
                 789****7 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0092
                 HHHHHSSBETTTSSB- CS
      zf-P11  30 llLsvserCpiCkkPL 45 
                 ++ +   rCpiC+kPL
  KKY21154.1 348 IVWKAKGRCPICRKPL 363
                 5666778********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.51
# Mc/sec: 2451.59
//
Query:       KKY21155.1  [L=653]
Description: putative family metal ion [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-26   93.2   8.0    4.5e-18   65.6   0.6    3.2  3  CorA      CorA-like Mg2+ transporter protein
  ------ inclusion threshold ------
        0.8    9.9   3.4        2.1    8.6   1.8    2.1  2  BORCS6    BLOC-1-related complex sub-unit 6


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   5.5e-07     0.005       5      55 ..     185     235 ..     183     241 .. 0.95
   2 !   14.1   0.8   2.5e-06     0.022      71     186 ..     348     468 ..     329     489 .. 0.78
   3 !   65.6   0.6   5.1e-22   4.5e-18     188     286 ..     503     601 ..     486     603 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5.5e-07
        CorA   5 vWldlsspteeeleeLaeelgldelaledlldseerprvedyddylllvlp 55 
                 +W++++  + + ++ L  + gl+ la+edl+++++r+++++y+d++++v+ 
  KKY21155.1 185 RWINVNGLSWDVISLLGNHKGLHRLAIEDLMNTRNRTKADFYNDHTYIVMS 235
                 6***********************************************986 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.5e-06
        CorA  71 lsill.gdnflitvrrep.lealdevikrlk...deggkpkspgellyrlldeivdrlfellekleeeldeledeledstkkeilrelaqlrrrlvklr 164
                 +si+l  dn++ ++ ++   ++   +ikrl+      ++  +++ l+ +++d+i+d  ++++ +  + + ++e  + ++ + ++  +l+ l  ++  l+
  KKY21155.1 348 VSIFLnADNTVTSFFESSaEDIEIPIIKRLQsreTILRESCDASMLTQAIIDTIIDLAIPVTTAYQDAIGDIELSVLTDPSIQQSTSLYILTSEINVLQ 446
                 555552344444433333133335566666653324466778888999*************************************************** PP

        CorA 165 ralapnrevlkrllakaddkll 186
                  a+ap  +++++l+++++++++
  KKY21155.1 447 NAMAPILAIVSALKDHKRENTM 468
                 **********777778887766 PP

  == domain 3  score: 65.6 bits;  conditional E-value: 5.1e-22
        CorA 188 dedkeylrdlldelerllemlealrerleslqdtyssllserlNrvmkvLTvltaiflPlTlitGiyGmNfkglPelewsygypfvlllglmallaill 286
                 +  + yl d+ d++e + +  +++r+ +++l d++++++   +N+ mk LT +t +flPl+++tG++GmNf +  + e+s +y++ + + +++++++ll
  KKY21155.1 503 PLTHTYLGDIADHIELITQSYDSMRRSADNLVDLIFNTIGAYQNESMKQLTFVTCMFLPLSFLTGYFGMNFTHFQGIEHSDVYFWKIAIPFAFATTVLL 601
                 556789******************************************************************999999999999987777777777765 PP

>> BORCS6  BLOC-1-related complex sub-unit 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.8   0.00023       2.1      50     144 ..     366     464 ..     344     469 .. 0.83
   2 ?    0.2   0.0     0.089     8e+02      33      82 ..     484     533 ..     464     551 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00023
      BORCS6  50 ipeidpnvlsdlereaqkvaasvdnllenlssklhsisaltvgnietykdavdklgdav..Dssik...smYqLlAkaEElskamkPveklakqikeik 143
                    i+  +++ l+++ + + +s d+ + + ++++++i  l++   ++y+da+  +  +v  D si+   s+Y L      l++am P+ ++ + +k+ k
  KKY21155.1 366 AEDIEIPIIKRLQSRETILRESCDASMLT-QAIIDTIIDLAIPVTTAYQDAIGDIELSVltDPSIQqstSLYILTSEINVLQNAMAPILAIVSALKDHK 463
                 56788889999999999999999986643.68999*****************97665544499**75557899999***************99999988 PP

      BORCS6 144 r 144
                 r
  KKY21155.1 464 R 464
                 7 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.089
      BORCS6  33 esstpsaslskqllaaqipeidpnvlsdlereaqkvaasvdnllenlssk 82 
                 +++++s sl+ ++    i ++ ++ l d+  + + +++s d++ ++  + 
  KKY21155.1 484 RQAHNSMSLKPVTAGVAISPLTHTYLGDIADHIELITQSYDSMRRSADNL 533
                 34444555556666677999999999999999999999999998776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 4159.45
//
Query:       KKY21156.1  [L=588]
Description: hypothetical protein UCRPC4_g03852 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-60  203.5   0.0    5.4e-60  203.1   0.0    1.1  1  UPF0052   Uncharacterised protein family UPF0052


Domain annotation for each model (and alignments):
>> UPF0052  Uncharacterised protein family UPF0052
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.1   0.0     3e-64   5.4e-60       2     240 ..       8     371 ..       7     381 .. 0.90

  Alignments for each domain:
  == domain 1  score: 203.1 bits;  conditional E-value: 3e-64
                 EEEE-CHHHHHHHHHHCCSS....CEEEEEE-----SHHHHHHHHHHTS---HHHHHHHHHH--S-C......HHHHHCH-B-SS...SSSST...... CS
     UPF0052   2 vvlgGGtGlskllrglkevt....aeltavvtvaDdggssGelrrelgllaigDirnvlvalidder......lleeLfqyRfkg...dgdla...... 81 
                 vv++GG+++++l++++++v+    + l +v++++D+ggss+el+r++g+++igD+r++lv+li+ e+      ++++Lf++R+++       +      
  KKY21156.1   8 VVFSGGSAANNLVDVFEAVRkskeCLLNYVIPISDNGGSSSELIRVFGGPGIGDVRSRLVRLIRPEPhssersAIADLFNHRLSSassA---Eahqewy 103
                 9*******************998888************************************999998888899999*******95551...3445777 PP

                 ..............................................T-BHHHHHHHHHHHHH.S-HHHHHHHHHHHTT-.SS..EEEES..-SS--EEE CS
     UPF0052  82 ..............................................ghslgnllLaalaelt.gsleeaiealskilkv.rg..rvlPa..tddpvels 128
                                                               ++++gnl+L++ a+++ gs+e+ai++l +i+++ +   rv+Pa  ++ +++++
  KKY21156.1 104 tivdgtsqlwrnisaakkelirsffnvlnleilkrsrpptstfdftSAAVGNLFLTG-ARIFcGSFESAIYLLGSICSIpDDlvRVIPAinSNFSHHIC 201
                 7777777788999999999999999999999999999999999999***********.999989***************73347*************** PP

                 EEETTS-EEESTTTGG................................................GG-S....-EEE.EEEESTT--....--HHHHHHH CS
     UPF0052 129 aeledGeeitgeskis................................................eark.lkapikr.vflepegae....aapevleai 173
                 a l++Ge+i g+++is                                                ++++ l+++i+r ++++p+g+e    a+p+v++ai
  KKY21156.1 202 AGLANGEIIVGQNSIShpsapsaveisvkdrlnsrlsvgdheaedanlpgtlptllkqnikfskTEEEdLPSRIERiWYINPYGQEihppANPRVIDAI 300
                 ***************8899*******************************************9744666****************88888********* PP

                 HH-SEEEE-SS-IIIIIHHHHTSCCHHHHH.HH-SSEEEEE--SB-..-TTTST.T-BHHHHHHHHHHCH- CS
     UPF0052 174 keAdlivlgpGslytSiiPiLlvpgiaeal.reskakkvlvsnimt..qkGetd.gfsvsdhvkaieravg 240
                 k++++i++++GslytSiiP+++++g++ea+  +  ++k+l++n     + G     +++ d+v+ai +a +
  KKY21156.1 301 KSSQAIIYSIGSLYTSIIPSIILRGVGEAIrTSPARHKILILNGSLdrEVGPSSnPYNALDFVEAIVKAGE 371
                 ******************************5555668******8751134443369999999999998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 3661.58
//
Query:       KKY21157.1  [L=1182]
Description: putative dna excision repair protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      9e-71  238.4   0.0    1.2e-70  238.0   0.0    1.2  1  SNF2_N        SNF2 family N-terminal domain
    1.9e-22   79.0   0.0    3.4e-22   78.2   0.0    1.4  1  HIRAN         HIRAN domain
    3.8e-14   53.0   0.0    8.7e-14   51.8   0.0    1.7  1  Helicase_C    Helicase conserved C-terminal domain
    1.6e-05   25.0   0.0    3.4e-05   23.9   0.0    1.6  1  ResIII        Type III restriction enzyme, res subunit
    4.3e-05   23.2   0.2    0.00013   21.7   0.0    1.9  2  UBA_4         UBA-like domain
      5e-05   23.1   6.8    8.8e-05   22.3   6.8    1.4  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    0.00026   20.8   8.7    0.00053   19.8   8.7    1.5  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    0.00035   20.3   5.1     0.0009   19.0   5.1    1.7  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    0.00039   20.4   8.1     0.0008   19.4   8.1    1.6  1  zf-RING_UBOX  RING-type zinc-finger
    0.00066   20.0   8.9     0.0016   18.7   8.9    1.7  1  zf-RING_2     Ring finger domain
     0.0037   17.2   7.0      0.017   15.1   7.3    2.0  2  zf-RING_5     zinc-RING finger domain
  ------ inclusion threshold ------
      0.024   13.8   0.2      0.059   12.5   0.2    1.6  1  PLU-1         PLU-1-like protein
       0.52   10.5   8.1        1.1    9.5   8.1    1.6  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
       0.77    9.7   6.5        3.5    7.6   6.7    2.0  2  Prok-RING_4   Prokaryotic RING finger family 4


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.0   0.0   9.5e-74   1.2e-70       1     349 [.     416     806 ..     416     807 .. 0.81

  Alignments for each domain:
  == domain 1  score: 238.0 bits;  conditional E-value: 9.5e-74
                 HHHHHHHHH........................................................HHHHHTT--EEE---TTS--HHHHHHHHH...HH CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N   1 yQkeavkwmlkReqnlq.dleaalrkllk................tldgekiyvnpatgevveesaeakqsvrGGiLaDemGLGKTvqvlalilaqrak 82 
                 yQk+a++wml +e++++ + e+ ++ l++                  +g + yvnp++ge++ e + ++q+  GGiLaDemGLGKT+++++li++++++
  KKY21157.1 416 YQKQALHWMLAKERQEKpNHEVFMHPLWEeytwpgkdiddvtlpeVAGGTNFYVNPYSGELSLEFPIQEQNCLGGILADEMGLGKTIEMMSLIHTHKSN 514
                 9********8877655414567778888899*************98999*********************************************99964 PP

                 TTTS---.......................S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHH.HH-----------------EEEE-HHHHHHHT CS
                 xxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  83 eekdkek................krkdtlagptLivvPaslldqWeneierhvsssalrvlvyggq.kkmkkkntkvapklladydvvittYdvlsrea 164
                  ++ + +                   +++   tL+v+P+sll qWe+e ++  + ++++ l y g+ k+ + +n   a++ + +   +it+Y v+ +e 
  KKY21157.1 515 IAESATEkglatvnnlprlpqnsSSIEPAPCTTLVVAPMSLLAQWESEAAKASKTGSMKTLLYYGNdKSANLQNLCSAANAASAPTMIITSYGVVLSEF 613
                 44444333454555555554444444455555*******************999999987766555055677777888888999999999999999777 PP

                 .............TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTHHHHHHHHHHH CS
                 xxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 165 elq.......kkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllqrpieaqaekg 256
                 + +        +   l +ve +rv+lDE+h +kn +sk+a+a+ ++++++rw+ltGTPi n ledl++L+ fL++ep++++ ++++ ++ p+e  +++ 
  KKY21157.1 614 NQVvdmsgnrGSHGGLFSVEYFRVILDEAHHIKNRQSKTAKACYEIAAKHRWVLTGTPIVNRLEDLFSLVRFLKVEPWSNFSFWKTFITVPFE--SKEI 710
                 666899998888899******************************************************************************..5555 PP

                 HHHH...HTT-STTEE---GGGT....--..S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-HHHHHHHHHHHHH- CS
                 xxxx...xxxxxxxxxxxxxxxx....xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 257 rsrL...lqllqrlmlrrakkdv....ek..nlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskekilelllelrqacnh 346
                 ++ L    ++l++l+lrr+k+      e+   lPp++  i  ++lsk er++Y  + + +  ++ a+++      +  +s   + i+  ll+lrq c+h
  KKY21157.1 711 VRALnvvQTVLEPLVLRRTKDMKtpegEAlvPLPPRQIVIEEVELSKAEREVYDFIFTRAKRTFNASMQAG----TVLKS--FTTIFAQLLRLRQSCCH 803
                 555411157899********9777866333369*********************44444444444433333....22222..366************** PP

                 --X CS
                 xxx RF
      SNF2_N 347 pql 349
                 p l
  KKY21157.1 804 PVL 806
                 977 PP

>> HIRAN  HIRAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0   2.6e-25   3.4e-22       1      95 [.     169     278 ..     169     279 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 2.6e-25
                 EEEEEEEEECGGGCCT..---TTEEEEEEE-T..................T-SS-TT-EEEEETTS-EEEEE-HHHHHHHHHHHHTTSSEEEEEESS-T CS
       HIRAN   1 lgsfevsvvglsyysgtgylkpgtevilerep..................nnpadanavrvlnergfeiGrlprevakwlspLldsgfitfegvvvdap 81 
                 +g+f v +++++  sg + l++g++v ++r +                    ++ + + r++ne g+eiGrlp+e a+w+s+L+d+++++feg +v+ap
  KKY21157.1 169 IGAFGVAAWATK--SGLNLLRHGEKVLIQRTKltpktklgrggkatpviaRSQKADVITRFTNECGEEIGRLPKENAEWVSTLVDQKVCHFEGSCVYAP 265
                 799*********..************************************9999********************************************* PP

                 TTEEEEEEEEEEEG CS
       HIRAN  82 eknlkvgltvylsl 95 
                 + + +v++tvyl++
  KKY21157.1 266 D-RIRVNDTVYLQI 278
                 *.**********97 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   6.8e-17   8.7e-14       2     111 .]     999    1115 ..     998    1115 .. 0.86

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 6.8e-17
                  HHHHHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.....TTSSS.EEEESGGGTSSSTSTTESEEEES CS
  Helicase_C    2 kleallell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.....kgesd.vLiatdvaerGidipkvnlVinf 91  
                  k+++ll+ l +l + + k++if+++++ l+ ++  l+++++  ++++g+l+q+ r e+l+ f      + + + +L++ ++++ G++++++++V+++
  KKY21157.1  999 KIAKLLRHLaSLPSPNTKSVIFSQFTSFLDLISAQLTRQSLPHLRFDGTLTQQRRSEVLRTFSsestsSSSPKiLLLSLRAGGVGLNLTSASHVFMM 1095
                  67778888778999*************9977333356889**********************95555423344499********************* PP

                  SSSSSHHHHHHHHTTSSSTT CS
  Helicase_C   92 dlprnvtsyiqriGRtgRag 111 
                  d++++ +   q+i+R++R+g
  KKY21157.1 1096 DPWWSFAVEAQAIDRVHRMG 1115
                  ******************86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   2.6e-08   3.4e-05       2     169 ..     411     671 ..     410     673 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.6e-08
                 -EE-HHHHHHHHHHT............................................................TTS..EEEEEESTTSTHHHHHHHH CS
      ResIII   2 lelreyQeeaienlleklks......................................................krdk..rglikmaTGtGKTlvaakl 44 
                 l+lr+yQ++a+  +l+k  +                                                      +  +   g+++ + G GKT+ +++l
  KKY21157.1 411 LSLRKYQKQALHWMLAKERQekpnhevfmhplweeytwpgkdiddvtlpevaggtnfyvnpysgelslefpiqeQ--NclGGILADEMGLGKTIEMMSL 507
                 689********99995554468999*********************************************99533..446999**************** PP

                 HHHH-S................................-EEEEESSHHHHHHHHHHGGGGTGG........GEEEESSS-B--..............-S CS
      ResIII  45 ierllkkgkee...........................kflflvprkslleqtleefkkflseayke....igkkvsgdkkka.......kekdstnkk 105
                 i   +++  e+                            +l+++p  sll q+++e +k +++  ++          g+ k+a        +++++   
  KKY21157.1 508 IHTHKSNIAESatekglatvnnlprlpqnsssiepapcTTLVVAP-MSLLAQWESEAAKASKTGSMKtllyY-----GNDKSAnlqnlcsAANAASAPT 600
                 *99998877779999**********************66666666.6899****999999999987644441.....3333333555676555666666 PP

                 EEEEEHHHHHHTH..............HHHTTT-S........EEEEETGGGTTS..TTTHHHHHT---SEEEEEESS- CS
      ResIII 106 ilvttiqsldadseee......eeeseellrdrfd........viiiDEaHrlgak.kswreilekfkeavllglTATp 169
                 +++t++  + ++ ++       +  +                  +i DEaH+++   ++  ++   + ++ +  lT+Tp
  KKY21157.1 601 MIITSYGVVLSEFNQVvdmsgnRGSH--------GglfsveyfRVILDEAHHIKNRqSKTAKACYEIAAKHRWVLTGTP 671
                 66666666666662223333322222........1333445558999******99753444445555777777889999 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0     1e-07   0.00013       5      40 ..      70     106 ..      69     109 .. 0.93
   2 ?   -3.4   0.1       6.9   8.8e+03       1      11 [.     834     844 ..     834     848 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1e-07
       UBA_4   5 aqFqaiTGa..deekArqlLeannWdLerAislyFdsg 40 
                 ++F a+ G+  ++++A+q+ +a+++d+erA++++Fd g
  KKY21157.1  70 STFLAFIGQplSPDVAQQIEDAAGGDMERAVNMFFD-G 106
                 68******988*************************.4 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.9
       UBA_4   1 deliaqFqaiT 11 
                 ++li++F+a T
  KKY21157.1 834 QDLINRFTAQT 844
                 699****9865 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   6.8   6.9e-08   8.8e-05       3      49 ..     878     930 ..     876     931 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 6.9e-08
                 SB-TTTSSS.BS-EEETTEEEEEE-HHHHHHHHH......TT-B-TTT--B--E CS
  zf-C3HC4_3   3 eeCviCler.prnvvllpCgHlvlCeeCaekllk......rkkkCpiCrrpiek 49 
                 eeC+iC e+   + ++  C H+ +C++C+e++ +        ++C  Cr+p++k
  KKY21157.1 878 EECPICSEEpMIDPAVTTCWHT-ACKKCLEDYIEhqidkgDLPRCFNCRKPVTK 930
                 79******95678*********.*********99999999999********986 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   8.7   4.2e-07   0.00053       1      41 []     880     924 ..     880     924 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.2e-07
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC...TSSB-.-TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilks...rkkvk.CPlC 41 
                 CpiC ee+++   +++C H+ C+kC++ +++    ++  + C +C
  KKY21157.1 880 CPICSEEPMIDPAVTTCWHTACKKCLEDYIEHqidKGDLPrCFNC 924
                 *******999999*****************965553333346555 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   5.1     7e-07    0.0009       1      33 [.     879     911 ..     879     921 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 7e-07
  zf-C3HC4_2   1 kCpiCldm.lkdpsvvtpCgHvfCqkCilrsLee 33 
                 +CpiC ++ + dp  vt C+H+ C+kC+  ++e+
  KKY21157.1 879 ECPICSEEpMIDP-AVTTCWHTACKKCLEDYIEH 911
                 6****98646678.9*************998876 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   8.1   6.2e-07    0.0008       1      33 [.     880     919 ..     880     925 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 6.2e-07
  zf-RING_UBOX   1 CpICl.elftdPlvlpCGHtFCreCl....w..elsksle 33 
                   CpIC  e++ dP v++C Ht C++Cl    +    + +l 
    KKY21157.1 880 CPICSeEPMIDPAVTTCWHTACKKCLedyiEhqIDKGDLP 919
                   *****77999**6668**********65431434444444 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   8.9   1.3e-06    0.0016       2      44 .]     879     925 ..     878     925 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.3e-06
   zf-RING_2   2 eCpIC.leelssadsvlllpCgHvfhreClerwlrssst......CPlCr 44 
                 eCpIC  e++   d ++++ C H+ +++Cle+++++++       C +Cr
  KKY21157.1 879 ECPICsEEPMI--DPAVTT-CWHTACKKCLEDYIEHQIDkgdlprCFNCR 925
                 9****445554..333444.*****************************9 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   7.3   1.3e-05     0.017       1      43 [.     879     925 ..     879     926 .. 0.84
   2 ?   -0.9   0.3       1.3   1.7e+03       1      13 [.     920     932 ..     920     936 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.3e-05
   zf-RING_5   1 hCnkCfeklskeekfyltsCgHifCekClkkll......ekeavCpiCr 43 
                 +C++C+e+     ++ +t+C H++C+kCl  +       +   +C  Cr
  KKY21157.1 879 ECPICSEEP--MIDPAVTTCWHTACKKCLEDYIehqidkGDLPRCFNCR 925
                 6********..999***************99987777766666666666 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.3
   zf-RING_5   1 hCnkCfeklskee 13 
                 +C +C+++++k++
  KKY21157.1 920 RCFNCRKPVTKRD 932
                 699****996665 PP

>> PLU-1  PLU-1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   4.6e-05     0.059      52     128 ..     351     427 ..     343     438 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.6e-05
       PLU-1  52 wvekaqqllskk.qrtRrkneaeeeeeekeklsleelekLleeldslpFdlpeieqLkelleeieefqkkarellsee 128
                 ++e a q+ ++k q++ +     ++e+e   l+ ++l +L+++++s++Fd+pe+e  + +  ++ ++qk+a   +  +
  KKY21157.1 351 AAEIAEQYDKNKaQQNGQPPP-GDDEDEEGELEEDQLDTLYKKAQSFDFDTPEAEPASTFSLSLRKYQKQALHWMLAK 427
                 567788888888455544444.7788888899999**********************************997766553 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   8.1   0.00087       1.1       1      42 []     880     924 ..     880     924 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00087
  zf-C3HC4_4   1 CPiCld.YLekPvsleCGhsfClsCisslqkepdgeq..llCplC 42 
                 CPiC++  + +P+   C h+ C +C++ + +++ +++   +C  C
  KKY21157.1 880 CPICSEePMIDPAVTTCWHTACKKCLEDYIEHQIDKGdlPRCFNC 924
                 ****963799******************99998776555556666 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2      0.11   1.4e+02      28      39 ..     875     886 ..     872     888 .. 0.74
   2 ?    7.6   6.7    0.0028       3.5       1      46 []     880     934 ..     880     934 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.11
  Prok-RING_4  28 kdlssCPlCqrr 39 
                  +  + CP+C ++
   KKY21157.1 875 ESTEECPICSEE 886
                  45569****875 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0028
  Prok-RING_4   1 CvlCgeq.ekkailepCgHlvCkeCfdsk.dls.......sCPlCqrrisksdpf 46 
                  C +C+e+   ++++  C H  Ck+C+++  +++       +C  C++ + k d+f
   KKY21157.1 880 CPICSEEpMIDPAVTTCWHTACKKCLEDYiEHQidkgdlpRCFNCRKPVTKRDIF 934
                  89999995689***************98765556677788999999999888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.53
# Mc/sec: 6745.98
//
Query:       KKY21158.1  [L=532]
Description: putative choline transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-43  148.9  48.5    2.7e-43  148.4  48.5    1.1  1  AA_permease_2  Amino acid permease
    4.2e-17   61.9  40.5      6e-17   61.4  40.5    1.1  1  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.4  48.5   3.1e-47   2.7e-43       6     424 ..      61     489 ..      50     492 .. 0.84

  Alignments for each domain:
  == domain 1  score: 148.4 bits;  conditional E-value: 3.1e-47
  AA_permease_2   6 afalvigsvigsgifvknlaasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaaf....gkkvaflsawfnwfayvpvlasils 97 
                     +++++g+ +++ if      +ggp  +l+ +++++++ +  ++ + El+s +p+ gG+y++++++     g+ v+f+++ +n+f++++ lasi++
     KKY21158.1  61 NAWVAFGTSLSISIF------NGGPPGVLYEFLVAVLYYIFIAASLSELASSIPSAGGVYHWASITPgprkGRIVGFFAGSLNFFGWLFDLASIVY 150
                    567777777777777......89***************99999999***888************998555567777******************** PP

  AA_permease_2  98 vaasyllnal...gpdlqgntwltyliaiaililvalinirgikesakiqnilgilkil.lpliiliilglitvdgggfsslstetdtffpn.gwp 188
                    ++ + l+++    +pd++ ++w t++  ++i++l+++ +i+  k + ++q ++  ++++ ++++i++i+ +   +++ +s   + ++ f ++ gw+
     KKY21158.1 151 IMSELLVQMYalyHPDYTIQPWNTFIALVCITWLCIAATIFFNKYLPYLQHFGLFMVVVgGIVTIIVIASMPKSRAS-NS---FVWSDFENQtGWS 242
                    *99999666422257***********************************885555555155555555555544443.32...3487766667*** PP

  AA_permease_2 189 g...vllgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvil 279
                    g   +l g l  +++++  +s+++++ee  ++k+d+p+ai   +++ ++  + + ia++++v+d    + s+++ + a++ +a+++  +a++  ++
     KKY21158.1 243 GgvaFLTGVLNGAFTIGTPDSVTHMAEElpNPKRDLPRAIAAQVGLGALTAFCFGIALFYGVNDLDAVT-SSFP-LSAAYSQATNNNKGATFGLLF 336
                    87656999999*****************6666699*****************************55554.3333.679999999988888888866 PP

  AA_permease_2 280 ial.sllgaintavigssrvlealardgvlP..rffakvn.kfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigali 371
                    i++ sl+ ++++ ++++ r+ +alard++ P  rff++vn +   pi a+i+  i +++++ ++l+ s++a++ l+  + ++   sy+++i++ l 
     KKY21158.1 337 IVFlSLVPCLIGTFLTVGRTWWALARDNATPfpRFFSSVNeRLSCPIPATIFAGIMTTAFGAITLG-STTAFSDLAGSFIVLTTASYAFAIAANLS 431
                    66648888********************************99999***************988877.58999999999999999999999999998 PP

  AA_permease_2 372 lrkkrphlkrpgk.....ilvaiigalfllfllvalffppkgpatqssliytiiltva 424
                      +k+   + +++      +v++i ++++lf+ ++++fp   p+t   ++y+ +++v+
     KKY21158.1 432 TGRKNMPPGPFYMgqtfgTIVNCITVVLILFFNIMFCFPYTWPTTIAAMNYNSVILVG 489
                    77777766776666666678********************************555554 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4  40.5   6.7e-21     6e-17      17     466 ..      68     501 ..      49     509 .. 0.75

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 6.7e-21
  AA_permease  17 vglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGln..........ylfswitvlaleltaasiliqfw 104
                  ++l++ + ++Gp g+l  +l+a++ +++++ sl+e+a+ +p++gg y++as + gp+ G  +G+           + + +i++++ el + ++ +   
   KKY21158.1  68 TSLSISIFNGGPPGVLYEFLVAVLYYIFIAASLSELASSIPSAGGVYHWASITPGPRKGRIVGFFagslnffgwlFDLASIVYIMSELLVQMYALYHP 165
                  5789999*************************************************866555555444433333333333444444444444444444 PP

  AA_permease 105 elvtdlpkawvt......gavflvvlliinlvgvkvygeaefi.lalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeee 195
                   ++ +      +      ++++++ + + +++ +k+    + + l+++++  i+  i++    + + + ++     f++++ ++   + ++       
   KKY21158.1 166 DYTIQP-----WntfialVCITWLCI-AATIFFNKYLPYLQHFgLFMVVVGGIVTIIVIAS--MPKSRASNS----FVWSDFENQTGWSGGV------ 245
                  333333.....255554444444444.4556666666666655377777777777777773..334444455....6788877444444444...... PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplin 293
                      +f+ +    +f++    +v+ +a+E+ +P++++P+ai   v + ++  + +++ i l  + ndl+ +++s        + +   +++++ + + 
   KKY21158.1 246 ----AFLTGVLNGAFTIGTPDSVTHMAEELPNPKRDLPRAIAAQVGLGAL--TAFCFGIALFYGVNDLDAVTSSFPL--SAAYSQATNNNKGATFGLL 335
                  ....99***********************************988876554..6788888889999999999988855..56677788889999999** PP

  AA_permease 294 aviltaalssansslysasRvlyslakdglaP...kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsyl 388
                  ++++++++ ++++   +  R+ ++la+d++ P   ++ ++ ++   P+ a ++  i+  ++    +++l+ +++f  l  +  + + + + ++i++ l
   KKY21158.1 336 FIVFLSLVPCLIGTFLTVGRTWWALARDNATPfprFFSSVNERLSCPIPATIFAGIMTTAFG---AITLGSTTAFSDLAGSFIVLTTASYAFAIAANL 430
                  **********************************555566667789****999888777776...455554455655555555555555555555555 PP

  AA_permease 389 rfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgv 466
                        ++ ++++   +f +   + + ++++++++i++    ++ + t++++ + +++ s++++ + vl + i ++++
   KKY21158.1 431 ------STGRKNMPPGPFYMGQTFGTIVNCITVVLILFFNIMFCFPYTWPTTIAAMNYNSVILVGVVVL-TAIWWFIY 501
                  ......66777788999****************9999999999999999**************998665.55555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1063  (0.0592894); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.35s 00:00:01.04 Elapsed: 00:00:00.50
# Mc/sec: 3193.43
//
Query:       KKY21159.1  [L=726]
Description: hypothetical protein UCRPC4_g03855 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-18   65.2   0.0    8.6e-18   64.3   0.0    1.4  1  ATP13     Mitochondrial ATPase expression
     0.0038   17.3   0.0       0.88    9.7   0.0    2.8  3  PPR_3     Pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> ATP13  Mitochondrial ATPase expression
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   9.6e-22   8.6e-18       2     100 ..     302     405 ..     301     418 .. 0.88

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 9.6e-22
       ATP13   2 ellstvilslgrsgqlelieklikkvWgi.idesgkleek....etkvks.....dsplyPtselLkaivssfsynneiesAlklvdkfskkYpeielk 90 
                 e++s+vi+++gr+g+l+ +++++ ++W i  d  ++ +e+                spl+Pt  +L++++++f+ n e   Al+ vd +s+ Y+ ++++
  KKY21159.1 302 ETFSHVIVAMGREGDLDGVKNVLRSIWRIdLDLLQQYDEDeldtT----PnyfdrASPLRPTPSFLFSVAHAFCINREPLLALTAVDYISRLYD-MQIP 395
                 6899************************88888888777754321....256778***************************************.**** PP

       ATP13  91 kefWeellew 100
                  e+W+elle 
  KKY21159.1 396 FEVWQELLEA 405
                 *******986 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.97   8.7e+03      41      51 ..     144     154 ..     142     155 .. 0.85
   2 !    4.3   0.0    0.0046        41      18      57 ..     197     235 ..     191     239 .. 0.87
   3 !    9.7   0.0   9.9e-05      0.88       2      39 ..     288     325 ..     287     328 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.97
       PPR_3  41 mkkkgikPtvv 51 
                 +++++++P v+
  KKY21159.1 144 LREVKVRPQVD 154
                 689*****998 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0046
       PPR_3  18 YthLLtayanagnkklalevlermkkkgikPtvvtyNail 57 
                 +  LL+++   g+ +la  ++ +m  + ++P +  yN  +
  KKY21159.1 197 FVYLLEVAREMGDGDLADATFYEMSAV-VEPDLRCYNHYM 235
                 7789********************876.999999999766 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 9.9e-05
       PPR_3   2 ilremerkgikldvvtYthLLtayanagnkklalevle 39 
                 +l+em ++g++    t+ h + a+ + g+++ + +vl 
  KKY21159.1 288 VLHEMTDRGFEATCETFSHVIVAMGREGDLDGVKNVLR 325
                 89****************************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.48
# Mc/sec: 4561.09
//
Query:       KKY21160.1  [L=385]
Description: putative rrna processing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.1e-91  304.3  15.9    8.1e-91  304.3  15.9    2.1  2  Ebp2         Eukaryotic rRNA processing protein EBP2
  ------ inclusion threshold ------
      0.015   15.8   1.8      0.015   15.8   1.8    3.0  3  SVIP         Small VCP/p97-interacting protein
        1.4    8.0  10.4       0.71    9.0   8.4    1.5  2  TipE         Na+ channel auxiliary subunit TipE
        5.6    6.6   5.9          1    9.0   1.1    2.3  2  Ion_trans_N  Ion transport protein N-terminal
        5.7    7.2  28.3        1.5    9.1  12.2    2.4  2  Vfa1         AAA-ATPase Vps4-associated protein 1


Domain annotation for each model (and alignments):
>> Ebp2  Eukaryotic rRNA processing protein EBP2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2  12.5       2.8     1e+04     145     244 ..      25      80 ..       3     101 .. 0.33
   2 !  304.3  15.9   2.3e-94   8.1e-91       1     268 []     108     381 ..     103     381 .. 0.90

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 2.8
        Ebp2 145 gKqvqveklqeRqkeKketlekikklkkkrkkldfleeeeedefdvaleealkkkkkkkkkkkkgkknkkrkakdkKfGfGGkkrgsKsndaessadvs 243
                  K  q+++ ++R+keK +     + +   r+++++   +e def                                         +   nd++s +d +
  KKY21160.1  25 RK--QIKAAEKRKKEKAQSKALANGIIDDRNDKEE---AEGDEF---------------------------------------ADFDDDNDNDSDSDKE 79 
                 12..2223333333332222222222222222222...222222.......................................1222222222222222 PP

        Ebp2 244 g 244
                 +
  KKY21160.1  80 N 80 
                 2 PP

  == domain 2  score: 304.3 bits;  conditional E-value: 2.3e-94
        Ebp2   1 eedeelsalekgelkegedvvpekkkkltinnkeaLkekleeikl..kklpwvetldltsk.paeiedvedDlkRElaFykqaleavkearkrlkklgv 96 
                 +ed++ls+l   ++++++d+vp+  ++ltinn++aL ++++++++   +++++ +++l+s+ p++i+d +dDl+REl Fy+++++a++ear++lkk++v
  KKY21160.1 108 DEDVPLSDL---SEDDRADTVPH--QRLTINNTTALISSTNRVRIarPSHKFSVHNSLISSiPTNIPDPNDDLTRELEFYRVCQTAAREARSLLKKEKV 201
                 678888888...66889999***..********************999*************************************************** PP

        Ebp2  97 pfkRPeDYFAEMvKsDehMekvkekLleeqaakkaseearkqRelkkfgKqvqveklqeRqkeKketlekikklkkkrkkldfle..eeeedefdvale 193
                 pf+RP+DYFAEMvKsDehM k+k+kL++e+a+kkas ear+qR+lkkfgKqvqv+k qeR+keK+etl+ki++lk+krk  d+ +  e+++d fd+ +e
  KKY21160.1 202 PFTRPTDYFAEMVKSDEHMGKIKQKLYDEAARKKASSEARRQRDLKKFGKQVQVAKEQERAKEKRETLDKINQLKRKRKGMDTGNtrEDDNDLFDIGVE 300
                 ********************************************************************************999988888999******9 PP

        Ebp2 194 eal.....kkkkkkkkkk.....kkgkknk.....k....rkakdkKfGfGGkkrgsKsndaessadvsgfsakkkkkkkgkkkkkkRpgksrR 268
                 ++            k+++           +     k    r+a+dkKfGfGGkkr+sKs+da s+ d++gfs+kk    kgk +++kRpgk+rR
  KKY21160.1 301 DDGesgrpG-----KRRReggghG-----AgsgdrKgkmaRTARDKKFGFGGKKRFSKSGDAASTGDLRGFSTKKM---KGKGGAAKRPGKNRR 381
                 999455431.....2222122221.....12233323356**********************************94...678899********9 PP

>> SVIP  Small VCP/p97-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   1.8   4.1e-06     0.015      20      41 ..      18      40 ..       8      73 .. 0.80
   2 ?   -3.2   1.2       3.3   1.2e+04      38      60 ..      79     101 ..      76     110 .. 0.49
   3 ?   -1.1   9.2      0.75   2.7e+03      25      71 ..     224     270 ..     211     276 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.1e-06
        SVIP 20 da.eerRrqqaEAAekRqeeqes 41
                d+ +e+Rr+q+ AAekR++e+++
  KKY21160.1 18 DVeAEKRRKQIKAAEKRKKEKAQ 40
                4425899************9874 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.3
        SVIP  38 eqesRGiknpesvkrkqkraeea 60 
                 e+e  G   p +++ +++  ee+
  KKY21160.1  79 ENEASGKSKPTAAASQEEDGEEE 101
                 55555555555555554443333 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.75
        SVIP  25 RrqqaEAAekRqeeqesRGiknpesvkrkqkraeeaekreeeaarsn 71 
                  +++ + A + ++ +e R  +++++  ++ + a+e+e+++e++++ +
  KKY21160.1 224 KQKLYDEAARKKASSEARRQRDLKKFGKQVQVAKEQERAKEKRETLD 270
                 456665566667777789999*****999999999999999977655 PP

>> TipE  Na+ channel auxiliary subunit TipE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   8.4    0.0002      0.71     328     418 ..      51     142 ..      45     161 .. 0.86
   2 ?   -3.6   0.0       1.3   4.7e+03     431     451 ..     244     264 ..     234     276 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0002
        TipE 328 dkngeeediedelaetdegndnkidavneseaavtanhinennvdtaGstiindasttattplqqllpnGtansstnisqtntntta.ttnt 418
                 d+n +ee+  de+a+ d+ ndn  d+ +e+ea   ++      ++  G+++i++++  ++ pl +l  +  a+++     t  ntta  ++t
  KKY21160.1  51 DRNDKEEAEGDEFADFDDDNDNDSDSDKENEASGKSKPTAAASQEEDGEEEIEEDEEDEDVPLSDLSEDDRADTVPHQRLTINNTTAlISST 142
                 89******************************9999999999999********************999999998888788888888843333 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.3
        TipE 431 sdlnsfGhqlkvkmadelsre 451
                  dl  fG+q++v   +e ++e
  KKY21160.1 244 RDLKKFGKQVQVAKEQERAKE 264
                 589999999988777776554 PP

>> Ion_trans_N  Ion transport protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3       1.4   4.9e+03      23      31 ..      19      27 ..      18      29 .. 0.86
   2 ?    9.0   1.1   0.00028         1      14      33 ..     246     265 ..     240     268 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.4
  Ion_trans_N 23 lekEkeRqk 31
                 +e Ek+R++
   KKY21160.1 19 VEAEKRRKQ 27
                 789****86 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00028
  Ion_trans_N  14 lklFGskkAlekEkeRqkea 33 
                  lk FG ++ ++kE+eR+ke 
   KKY21160.1 246 LKKFGKQVQVAKEQERAKEK 265
                  899**************985 PP

>> Vfa1  AAA-ATPase Vps4-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  12.2   0.00042       1.5      63     132 ..      12      99 ..       3     152 .. 0.65
   2 ?    3.9   8.1     0.017        62      69     130 ..     217     280 ..     190     304 .. 0.48

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00042
        Vfa1  63 kkkkeleeeiekvkkeyeekqkkkkekekkk............kekd........kkdkdkkkekekdkkkekekeeekkkelkkaeeel 132
                 k++k  + e ek +k++++ +k+kkek ++k            k  +        + d+d+++++++dk++e + +++ +++++++e+ +
  KKY21160.1  12 KNEKGFDVEAEKRRKQIKAAEKRKKEKAQSKalangiiddrndK--EeaegdefaDFDDDNDNDSDSDKENEASGKSKPTAAASQEEDGE 99 
                 55566899999999****99999999999999999999988651..23445454422333333333333333332222222222222222 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.017
        Vfa1  69 eeeiekvkkeyeekqkkkkekekkkkekd..kkdkdkkkekekdkkkekekeeekkkelkkaee 130
                 +e++ k+k+++ ++ ++kk +++  +++d  k  k+ +  ke++++kek +  +k+++lk++ +
  KKY21160.1 217 DEHMGKIKQKLYDEAARKKASSEARRQRDlkKFGKQVQVAKEQERAKEKRETLDKINQLKRKRK 280
                 4455555555444444444333333333332111222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2089  (0.116515); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.36s 00:00:01.14 Elapsed: 00:00:00.52
# Mc/sec: 2226.73
//
Query:       KKY21161.1  [L=1005]
Description: putative bifunctional fatty acid transporter acylsynthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-51  173.3   0.0    1.1e-50  172.5   0.0    1.3  1  AMP-binding    AMP-binding enzyme
    2.5e-25   89.0   0.0    6.3e-25   87.6   0.0    1.8  1  ADH_zinc_N     Zinc-binding dehydrogenase
    4.7e-22   77.9   1.1    8.5e-22   77.1   1.1    1.5  1  ADH_N          Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
       0.02   15.8   0.0      0.051   14.5   0.0    1.8  1  AMP-binding_C  AMP-binding enzyme C-terminal domain
      0.044   14.8   0.0       0.11   13.6   0.0    1.6  1  ADH_zinc_N_2   Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.5   0.0     3e-54   1.1e-50       8     421 ..     422     858 ..     419     860 .. 0.83

  Alignments for each domain:
  == domain 1  score: 172.5 bits;  conditional E-value: 3e-54
                  STTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCC CS
  AMP-binding   8 tpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvdse 105
                  + d++al +  eg+t+TY e + ++++lAa + ++G+++gd+Va+++ nspe+v++ +a+ k+Ga+++ +n++l++++la++++ + +k++i  +  +
   KKY21161.1 422 KQDAPALWF--EGRTWTYTEIKIEADSLAAIFHQRGITSGDVVAVFMTNSPEMVFTTYALGKLGAIPAYINTALRSKTLAHCMHVASPKLII--CTPD 515
                  5699***88..**********************99*********************************************************..9898 PP

                  CHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS.............-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEH..HHHHHHH CS
  AMP-binding 106 lleklleaaakleavklvivldadellkeeelkeeeeseekae.............kpeeeeelkpddlayiiYTSGTTGkPKGVmlsh..rnlvanv 188
                  l++++le  ++ ++   + ++   +++    l+++++ +++               +p   ++   +d+ +++YTSGT GkPK+V ++     lv+n+
   KKY21161.1 516 LASAVLELFSTTDVAIPTFLINLLSFKPL-SLPDDNPHSKE-LvqiryedlaavnvEPIARPKRLLSDTGCLVYTSGTSGKPKAVAIKNilPLLVSNA 611
                  99999999998777777777776666555.44544444433.1346678999997644334345559********************99866679999 PP

                  HHHHHHHC...SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGT CS
  AMP-binding 189 aslkletr...fklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdls 283
                   ++++++    f l    + +s+lpl+h ++l +++++++ s +t++l+++++a    ++++ +++ ++t + +v +++++ll +++           
   KKY21161.1 612 ETIDVKNPkkyFPL----RTYSCLPLFHGTALFTGVYYSVGSSSTLCLSRRFSA---SRFMKELTESGATRMLYVGELCRYLLTAPPTP-------YD 695
                  99984433223554....99******************************9998...346788899****************9976554.......23 PP

                  T.-SEEEEESS-EBHHHHHHHHHHHTC.EEEEEEEEGGGSSEC...EE...............CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBE.. CS
  AMP-binding 284 s.lrlvllggeplspellrffralfge.evlegYGlTEttgvv...tv...............lpleedkkklgsvGkplpgvevkivDeetgepv.. 359
                  + ++ + + g+ l  e++++f++++   e+ e+Y  TE ++ +   t+                   +  ++   + k+ p +e    D++tg  v  
   KKY21161.1 696 RaHKCITAKGNGLAWEVWTKFQDRYNIpEIREMYRSTEGLARFdnqTHlrsgagavqysgpirR--WW--ESDTYIVKVDPSTESLYRDPNTGFCVka 789
                  53777778*****************9999*************9876446677777777765321..12..2222345666899999999999999955 PP

                  ETTSEEEEE..EEETTS-SEBTT-HHHHHHHEEE...T.CC.EEEEEEEEEEETTSEEEEEEECCCEEE CS
  AMP-binding 360 pdgeeGell..vrgpgvmkgYlkkpeataeafds...e.gr.wlrTGDlgrldedGyleivgRkkdlik 421
                  p ge Ge    +r       Yl++pea+++++++   e g+ + r+GDl + ++ G +++  R+ d+  
   KKY21161.1 790 PLGEAGEAIgrIRDMAFYHEYLNNPEANEKKIIKdvfEkGDmFQRSGDLLVHEKGGWIRFHERSGDTYR 858
                  59*****887799999*****************88995578799******9998899******999865 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.0   1.8e-28   6.3e-25       1     128 [.     187     317 ..     187     319 .. 0.91

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 1.8e-28
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTT.TSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykea.dlverikeltg.gegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeeef 97 
                 gvG +++q+A+a+G ++ia+d  e+k +l+ + Ga+++in  ++ d+   ++ +t+ + gv  v+ ++Gs++++e+a+++l p G+lv+vG++   ++f
  KKY21161.1 187 GVGALGIQYARAMGLRPIAIDAGEDKKQLCLDSGAEAYINVLKEqDIPTTMATITDdKLGVRTVIVTAGSPKAYETAVEILGPMGTLVCVGIPPPTQPF 285
                 8****************************************5555**********9899*********************************5555556 PP

                 EHHH..HHHTT-EEEEE-SSCHHHHHHHHHHHH CS
  ADH_zinc_N  98 dlrn..lllkeksilGsllgslreefkealdll 128
                 ++ +  ++ k ++i+Gs++g+ re++ ea++ +
  KKY21161.1 286 PVHPlsFIDKGIRIIGSFVGT-REDILEAIQYV 317
                 66654499*************.9**99999976 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   1.1   2.4e-25   8.5e-22       1     108 [.      34     142 ..      34     143 .. 0.94

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 2.4e-25
                 TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS..--TT-EEEE-SEEE.-SSSHHHHT.T-GGG-TTBEETTTSS-SSS CS
       ADH_N   1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkk..lkvGdrVvveplis.cgeCaaCke.geenlCeeakllgvsldGgf 95 
                 p++vl++++a+g+Cg+D+ +++g      ++  +lGHE +G v++vg+ev+k  ++vG+r +++++   c++C +C + gee  C e+   g ++dG+f
  KKY21161.1  34 PDQVLVRLAATGVCGTDFALASG---KLGPHRDVLGHEGIGYVVKVGSEVSKtqVEVGHRACIPWVRDiCQKCVYCLTpGEEPRCVEQLNSGRKIDGCF 129
                 689*******************9...46666779****************99889**********9999*******998999***************** PP

                 BSEEEECGGGEEE CS
       ADH_N  96 aeyvvvpekklvk 108
                 aey +vp+++lv+
  KKY21161.1 130 AEYALVPTRYLVR 142
                 *********9986 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.4e-05     0.051       2      76 .]     869     949 ..     868     949 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.4e-05
                    HHHHHHSSTTEEEEEEE-----.TTS---EEEEEE------....HHHHHHHHHHH.HT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   2 vEsalvshpaVaeaaVvGvpde.vkGealvafVvlkdgsea....leeeLkahvrk.elgpyavpkkvvfvdelpktrsGK 76 
                    v + +++ p Va++ V+G++ +  +G+a +a+++l + +++      +   + +r+  l  +  p+ v++++++ ++++ K
     KKY21161.1 869 VKEHIARLPHVADVEVYGIKLDkYDGSAGAAVITLTPRTPEternFIQSFYQTLRAgGLTVWQLPRFVRITAQIKMNATFK 949
                    6677899************9887999********95333231234444444444334777789999999999999999887 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     3e-05      0.11      20     107 ..     244     327 ..     220     340 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3e-05
                   TT-EEEEEES-HHHHH.HHHHHHE.EEEEEEEE--.--..S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHHHH----EE CS
  ADH_zinc_N_2  20 gegvDvvldtvggealleaslkvl.pggGrlvsig.gpp.lsaallkpakkrkgrsvkyeflfsmkasaqadileelaalieeGklrpvvd 107
                   + gv  v+ t+g+++++e ++++l p  G+lv++g  pp  ++ + ++++  kg ++  +f+     + ++d + e  +++e G+++p + 
    KKY21161.1 244 KLGVRTVIVTAGSPKAYETAVEILgPM-GTLVCVGiPPPtQPFPVHPLSFIDKGIRIIGSFVG----T-RED-ILEAIQYVERGEVKPAIR 327
                   458999******88888*******666.*******5555555555566665555555555554....3.789.88999**********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1005 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 6872.68
//
Query:       KKY21162.1  [L=829]
Description: putative aldehyde dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.8e-141  471.9   0.0   2.3e-141  471.5   0.0    1.1  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  471.5   0.0  1.3e-145  2.3e-141       7     462 .]      27     477 ..      23     477 .. 0.97

  Alignments for each domain:
  == domain 1  score: 471.5 bits;  conditional E-value: 1.3e-145
                 SE.EEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH CS
      Aldedh   7 et.ievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaela 104
                 et  + +nP+++e++ kvpaat++d+++av+aA++af++wa+++++eR+ +Lr+a++ + ++k+ la+l++ e+Gkp+  a++ev+++  +l++ya++a
  KKY21162.1  27 ETfHQAVNPSNREPLWKVPAATEQDLNDAVNAAQKAFPEWAATSWTERQGLLRQAQERILSHKDGLAQLLVDEVGKPIPFAAREVSDTTGFLDFYANQA 125
                 555889********************************************************************************************* PP

                 HHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH- CS
      Aldedh 105 eklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealveh 203
                 e l +e++ + e  + + r+ P+Gv++aI+PWNfPl+laa+klapal++GN +++KP++ tp s+l+++el+++  +P+gvl+  +g ++++g  +++h
  KKY21162.1 126 EILPKEIIDT-EAFKVTQRWVPVGVTAAICPWNFPLVLAAGKLAPALLTGNPIIIKPSPFTPYSILKVVELIRD-IFPPGVLQAFNG-DDSMGPLMCTH 221
                 *******999.4788888999*****************************************************.8***********.778******** PP

                 TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-TT CS
      Aldedh 204 pevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgdpl 302
                 p++ k+sftGs ++g+k+++aa++nlk vtlElGG+++ i+++d+D+d ++ ++  g+f+n+GQ C a +r++v+++iydef+ ++v+++k++kv  + 
  KKY21162.1 222 PGISKISFTGSIPTGKKVMAAASRNLKSVTLELGGNSASIICPDVDVDIVAPEVSLGSFFNSGQLCAASKRVYVHKDIYDEFLLAMVNQVKSWKVAPAA 320
                 *************************************************************************************************** PP

                 STT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEEEE CS
      Aldedh 303 dedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaagv 401
                 +e   +GP+ +e q++ v+++ ++++++g+k  lGg  e ++ +k+ +++P +++  ++d+ i++eE FGP++++++ +de+e+i+ +Ndt+ GL+++v
  KKY21162.1 321 TEGAILGPVQNEMQYNIVKRIFDDTVSNGYKFALGG--EIKDANKDLVIQPAIIDRPPDDAMIVKEEPFGPIVPILSWSDEDELIQRVNDTNTGLGGAV 417
                 ************************************..56788999***************************************************** PP

                 E-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 402 ftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 +++d+ raer+a+++eaG+++iN+  +  + +  f G+k+Sg+G e g++gl  y++ k++
  KKY21162.1 418 WSSDIPRAERIASKIEAGTIWINSFEKPLPMS-HFAGHKESGIGGEWGEQGLYSYLQPKSI 477
                 *************************8877777.9************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (829 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.49
# Mc/sec: 5090.17
//
Query:       KKY21163.1  [L=424]
Description: putative mitochondrial large ribosomal subunit 35 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-11   43.0   0.0    9.5e-11   42.1   0.0    1.4  1  PBP       Phosphatidylethanolamine-binding protein


Domain annotation for each model (and alignments):
>> PBP  Phosphatidylethanolamine-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   5.3e-15   9.5e-11      10     123 ..     250     371 ..     237     378 .. 0.76

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 5.3e-15
                 GGS-EEEEES--TTSSEEEEEEEETTSCCTCT.T...EEEEEEEEEETTSSEE-TTCEE-B-TTSSCCCCS---B--STTS..EEEEEEEE....EESS CS
         PBP  10 ntsPplswsdvpegtksyalvviDpDapkvse.t...flHwvvtnipasvtslpegavqgknslgeesesgYlgpcPpkgdgkHrYvflly....aldv 100
                  + P+l+++ +++gt+ y++ +iDpD+p+ ++      +H+++tnip ++ts  ++  +++ + +     +Yl++   kg +  r+  l++    +l +
  KKY21163.1 250 AVPPTLTIQPFTAGTQLYTIAIIDPDVPNLDSnAfsyRCHFLATNIPINPTSTFADLSKLSSDNQL--LLPYLPAFSAKGIPYQRFATLIFsqkdNLPL 346
                 3449***********************9887753789***************88766555555555..45***********99********77776666 PP

                 SG--BGSS-SHHHHHHH.HC.TTEE CS
         PBP 101 ealdlkagftraelgaa.ia.ghvl 123
                 e++++ ++ +r+ ++ + +a  h l
  KKY21163.1 347 ETTSILPTLQREGFNMRsFAdRHRL 371
                 6555444444455554446656655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       859  (0.0479112); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 2782.45
//
Query:       KKY21164.1  [L=716]
Description: putative wd repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-34  115.4   3.6    4.4e-06   27.3   0.1    7.7  8  WD40          WD domain, G-beta repeat
      1e-09   38.6   0.3       0.23   11.8   0.0    4.5  5  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    0.00077   18.5   3.5      0.073   12.0   0.5    3.4  4  Ge1_WD40      WD40 region of Ge1, enhancer of mRNA-decapping 
    0.00091   17.9   0.0     0.0094   14.5   0.0    2.4  2  Cytochrom_D1  Cytochrome D1 heme domain
  ------ inclusion threshold ------
       0.14   11.7   0.0       0.14   11.7   0.0    2.1  3  ASD2          Apx/Shroom domain ASD2
       0.24   11.3   1.5        2.8    7.9   1.9    2.6  2  Nudix_N_2     Nudix N-terminal


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   6.9e-08   0.00021       9      38 .]     122     150 ..     115     150 .. 0.89
   2 !   27.3   0.1   1.5e-09   4.4e-06       2      37 ..     185     220 ..     184     221 .. 0.87
   3 !   20.7   0.1   1.8e-07   0.00053       2      38 .]     226     263 ..     225     263 .. 0.85
   4 !   15.3   0.0   9.5e-06     0.028      13      37 ..     279     303 ..     267     304 .. 0.84
   5 ?   -0.6   0.0      0.99     3e+03      23      38 .]     347     361 ..     323     361 .. 0.78
   6 !   19.3   0.0   5.2e-07    0.0016       6      37 ..     370     404 ..     365     404 .. 0.77
   7 ?    2.4   0.0      0.11   3.3e+02       2      16 ..     416     432 ..     415     449 .. 0.72
   8 ?   -0.9   0.0       1.2   3.5e+03      18      37 ..     500     519 ..     499     520 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 6.9e-08
                 SSSSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GHssvtslafspdgawlasGsdDgtvriWd 38 
                 +H  ++++ fs+dg++la+++ D+ vr+W+
  KKY21164.1 122 TH-AIWAMEFSKDGKYLAAAGQDKVVRVWS 150
                 46.6*************************5 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 1.5e-09
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 ++++++ GH ssv +l++s+++ +l+ +s+D+tvr+W
  KKY21164.1 185 ELVQEYAGHgSSVLDLSWSKNNFLLS-SSMDKTVRLW 220
                 57899****999*********99885.677******* PP

  == domain 3  score: 20.7 bits;  conditional E-value: 1.8e-07
                 EEEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                 +cl t++ H ++vts++f+p  +  +++Gs D t+r+W+
  KKY21164.1 226 ECLCTFK-HaDFVTSIQFHPRDDRfFLAGSLDSTLRLWS 263
                 79999*8.8688*****88888883469**********5 PP

  == domain 4  score: 15.3 bits;  conditional E-value: 9.5e-06
                 EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriW 37 
                 vt++af pdg++ ++G++Dg + i+
  KKY21164.1 279 VTAVAFTPDGKYAIAGCYDGLCLIY 303
                 9***********99******99997 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 0.99
                 SEEEEEETTSEEEEEE CS
        WD40  23 awlasGsdDgtvriWd 38 
                 ++l+++  D  vr+++
  KKY21164.1 347 KLLITSN-DSRVRMYN 361
                 3478766.*****997 PP

  == domain 6  score: 19.3 bits;  conditional E-value: 5.2e-07
                 EEESS.SS...EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   6 tltGH.ss...vtslafspdgawlasGsdDgtvriW 37 
                 +++G  +    + +  fs+dg+++++Gs+D++v+iW
  KKY21164.1 370 KFRGNeNTcsqI-HATFSDDGRYVICGSEDRKVYIW 404
                 577776543445.444******************** PP

  == domain 7  score: 2.4 bits;  conditional E-value: 0.11
                 EEEEEEESSSS.E.EEE CS
        WD40   2 qclrtltGHss.v.tsl 16 
                 ++++++++Hs  v t++
  KKY21164.1 416 RPVHVFEAHSAiVtTAI 432
                 689******66565555 PP

  == domain 8  score: -0.9 bits;  conditional E-value: 1.2
                 EETTSSEEEEEETTSEEEEE CS
        WD40  18 fspdgawlasGsdDgtvriW 37 
                 ++ dg+ ++++++ g+++++
  KKY21164.1 500 THTDGNIIITADYTGSIKVF 519
                 57899999999999999986 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00012      0.34      18      73 ..     102     157 ..      97     171 .. 0.77
   2 !   11.8   0.0   7.6e-05      0.23      35      89 ..     191     242 ..     175     245 .. 0.82
   3 !    9.7   0.0   0.00034         1      33      80 ..     271     318 ..     256     337 .. 0.79
   4 ?   -2.3   0.0         2   5.9e+03      59      77 ..     354     372 ..     342     404 .. 0.51
   5 ?   -2.6   0.0       2.4   7.3e+03      49      68 ..     503     522 ..     501     536 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
  ANAPC4_WD40  18 ellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvv 73 
                  +++  R +       +++++ + + ++++++dgk La a +d  vr+ ++ s++  
   KKY21164.1 102 SIESRRSSITSTAAPPQPGNTHAIWAMEFSKDGKYLAAAGQDKVVRVWSIMSTQDE 157
                  5666666666666668899999************************9998876544 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 7.6e-05
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  ++++s+v +L+W++++ +L  +  d +vrl +++ ++++ +++ ++   vt++++
   KKY21164.1 191 AGHGSSVLDLSWSKNN-FLLSSSMDKTVRLWHISRKECLCTFKHADF--VTSIQF 242
                  67899*******9885.666777899**************9987766..888876 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00034
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                   ++k ++ v+++a+ pdgk    ++ dg + +++  +  +  +++v s
   KKY21164.1 271 YSAKIQNMVTAVAFTPDGKYAIAGCYDGLCLIYETDKLSLHAQIHVRS 318
                  45677899*************************999888777777665 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 2
  ANAPC4_WD40  59 dgevrlldaesgkvvhsls 77 
                  d++vr+++  + ++  +++
   KKY21164.1 354 DSRVRMYNFRDRQLEIKFR 372
                  4445544444444333333 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 2.4
  ANAPC4_WD40  49 dgklLavaysdgevrlldae 68 
                  dg+++  a   g+++++   
   KKY21164.1 503 DGNIIITADYTGSIKVFRQD 522
                  56666666666666555443 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.5   2.4e-05     0.073     189     286 ..     124     234 ..      97     260 .. 0.69
   2 ?    0.3   0.0     0.088   2.6e+02     187     214 ..     276     303 ..     263     313 .. 0.81
   3 !    4.2   0.0    0.0058        17     187     234 ..     377     425 ..     346     434 .. 0.75
   4 ?   -3.7   0.0       1.5   4.4e+03      75      96 ..     501     522 ..     499     529 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.4e-05
    Ge1_WD40 189 liveaafspdGtalatasedGevkffqvylede...eeprCLheWkPhd.Gkslssllfldnhkee.....s...deqfW.r.faitgadnnselklWs 273
                  i    fs dG  la+a +d +v+ + +  +++    +++   e +P d G +l + +f  ++ +e     s   d   W +   + +++ ++ ++lW 
  KKY21164.1 124 AIWAMEFSKDGKYLAAAGQDKVVRVWSIMSTQDerhAHEKQEEEKHPEDsGMKLNAPVFRKELVQEyaghgSsvlD-LSWsKnNFLLSSSMDKTVRLWH 221
                 577889**********************988662333344555666765588888888866554422111211112.2352222345566677888888 PP

    Ge1_WD40 274 celWtClqtikfa 286
                  +  +Cl t k a
  KKY21164.1 222 ISRKECLCTFKHA 234
                 8888888888765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.088
    Ge1_WD40 187 hsliveaafspdGtalatasedGevkff 214
                 + +++  af+pdG    + + dG+   +
  KKY21164.1 276 QNMVTAVAFTPDGKYAIAGCYDGLCLIY 303
                 45788999*****999999***987666 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.0058
    Ge1_WD40 187 hsliveaafspdGtalatasedGevkffqvyle.deeeprCLheWkPhd 234
                 +   ++a+fs dG  +   sed +v  +   +  ++ e+r +h +  h 
  KKY21164.1 377 TCSQIHATFSDDGRYVICGSEDRKVYIWPTGVIeKDVEKRPVHVFEAHS 425
                 335679**********************987661557889999988886 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 1.5
    Ge1_WD40  75 hvsskillavdekgslfvykve 96 
                 h++ +i+++ d++gs+ v++ +
  KKY21164.1 501 HTDGNIIITADYTGSIKVFRQD 522
                 6666777777777777777655 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.13   3.8e+02      41      61 ..     128     148 ..     103     163 .. 0.70
   2 !   14.5   0.0   3.1e-06    0.0094       6     189 ..     206     396 ..     202     417 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.13
                   EE-TT.SSEEEEEETTSEEEE CS
  Cytochrom_D1  41 rvfasdgRyvyvigRDgkvtl 61 
                     f++dg+y+  +g D  v +
    KKY21164.1 128 MEFSKDGKYLAAAGQDKVVRV 148
                   346666666666666666554 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 3.1e-06
                   EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE-SSEEEEEEE--TTSEEEEEEEETTEEE CS
  Cytochrom_D1   6 lfvvverdagkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaevkiGlnarsvavSqddryvivgnYlPgqlv 102
                    f +  + +  v+l   ++ke l +++    +   +   +d+R+ +  + D+++ l  +  k++    ki      va   d++y+i+g Y  g   
    KKY21164.1 206 NFLLSSSMDKTVRLWHISRKECLCTFKHADFVTSIQFHPRDDRFFLAGSLDSTLRLWSIPDKHVAYSAKIQNMVTAVAFTPDGKYAIAGCYD-GLCL 301
                   5666666677777777778888888876666666666789*******************99999999999999999***************7.8999 PP

                   EEETTT--EEEEEE--EE-SSS.S---EEEEEE-S.SSSE.....EEEEETTTTEEEEEE-SSS.SSEEEEEEE--SSEEEEEE-TTSSEEEEEE CS
  Cytochrom_D1 103 ildaetLelvkvisargltvde.resRVaaivasp.erpe.....fvvnlkdtgeillvdysdl.knlktrtieaakflhDggldpdkRYflaaa 189
                   i +++ L+l ++i  r + +++ + s++++i +   ++++      ++   +  ++ + ++ d   ++k r  e       ++++ d+RY + + 
    KKY21164.1 302 IYETDKLSLHAQIHVRSARGKNaKGSKITGIETITlPKDDpagevKLLITSNDSRVRMYNFRDRqLEIKFRGNENTCSQIHATFSDDGRYVICGS 396
                   **************999999888999999996543122221111112222344567777777764455555555555555677888888888743 PP

>> ASD2  Apx/Shroom domain ASD2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.2   6.4e+03      96     106 ..     158     168 ..     130     187 .. 0.56
   2 ?   -2.5   0.6      0.97   2.9e+03      55      67 ..     483     495 ..     460     543 .. 0.45
   3 ?   11.7   0.0   4.7e-05      0.14     116     161 ..     648     693 ..     614     701 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.2
        ASD2  96 eleekdeeeek 106
                 +++++++eeek
  KKY21164.1 158 RHAHEKQEEEK 168
                 11111112222 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.97
        ASD2  55 eeeekkeeeekse 67 
                 ++e++++++ek +
  KKY21164.1 483 HSESETKTREKPR 495
                 1111111111111 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 4.7e-05
        ASD2 116 kekkeeLieslskklevLkeeqealleeikanealgeevealvkev 161
                  e+k+ Li++ls+++++L+e+ e+l ee    +  g+e +  v+++
  KKY21164.1 648 LERKQSLISQLSSEISSLNETSESLSEEEVCKKCGGKEFKIDVRKL 693
                 4799*************************99999999999998876 PP

>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.73   2.2e+03       8      23 ..     344     359 ..     343     360 .. 0.87
   2 ?    7.9   1.9   0.00095       2.8       3      31 ..     678     715 ..     677     716 .] 0.79

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.73
                 -B-EEE--TT-SS-EE CS
   Nudix_N_2   8 tpvelripdgDnreRl 23 
                 ++v+l i   D+r R 
  KKY21164.1 344 GEVKLLITSNDSRVRM 359
                 67999*********96 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00095
                 -TTT--B.-E...EE--TT-SS.....-EEEETTTTEE CS
   Nudix_N_2   3 CsqCGtp.ve...lripdgDnr.....eRlvCpaCgti 31 
                 C++CG++  +   +++p  Dn+      R vC +Cg++
  KKY21164.1 678 CKKCGGKeFKidvRKLPRKDNEsestdKRQVCISCGAV 715
                 9999999766778999999986333337********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.50
# Mc/sec: 4287.42
//
Query:       KKY21165.1  [L=271]
Description: putative nucleoside-diphosphate-sugar epimerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.093   12.6   0.2       0.64    9.9   0.2    2.1  1  NAD_binding_10  NAD(P)H-binding


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   3.6e-05      0.64      39      78 ..      59     111 ..       7     128 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 3.6e-05
                     TTCEEEE.--TT-.CCHHHHHHTT-SEEEES---TCCHHHH...........H CS
  NAD_binding_10  39 eglevve.gdvtd.vedlaealkgadaVvsalggggkdeeg...........a 78 
                      +++v++  d+++ +++l + l+gad Vv+alg +++d ++           a
      KKY21165.1  59 LEINVIQhKDFESyPSELLKRLEGADGVVWALGVSQNDVQTeaeyvqitktyA 111
                     34555553466665799***************999996665445555533333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.54
# Mc/sec: 1513.93
//
Query:       KKY21166.1  [L=401]
Description: putative dna repair protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00017   21.2   0.0     0.0003   20.5   0.0    1.4  1  SAP       SAP domain
  ------ inclusion threshold ------
       0.03   14.9   1.2       0.08   13.5   1.2    1.7  1  Dehydrin  Dehydrin


Domain annotation for each model (and alignments):
>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.3e-08    0.0003       9      34 ..     199     224 ..     191     225 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.3e-08
                 HHHHHHHTT--TTS-HHHHHHHHHHH CS
         SAP   9 LKeeLkkrGLptsGkKaeLieRLkey 34 
                 L+++Lk +G+p  G K  L+ R++e+
  KKY21166.1 199 LRKKLKDLGIPDWGPKPLLQRRHTEW 224
                 9***********************98 PP

>> Dehydrin  Dehydrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.2   8.9e-06      0.08      88     126 ..      31      74 ..      17     108 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.9e-06
    Dehydrin  88 ssSSssSEDDGqGGRrKKgik.....eKiKEKlpggkkkeeekq 126
                 +s      DD qGGR+KK  k     e +KEK++g   +   + 
  KKY21166.1  31 ASATRAAGDDVQGGRQKKRRKiisedEDVKEKFSGRTTRARTRM 74 
                 56666788******99885443344489*******887655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.55
# Mc/sec: 2206.71
//
Query:       KKY21167.1  [L=2791]
Description: putative ataxia telangiectasia mutated [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-51  175.8   0.0    3.1e-51  174.6   0.0    1.6  1  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
    1.9e-39  135.2   0.3    1.9e-39  135.2   0.3    4.2  4  TAN             Telomere-length maintenance and DNA damage re
      9e-12   44.6   2.1    3.1e-11   42.9   0.1    2.8  3  FATC            FATC domain


Domain annotation for each model (and alignments):
>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.6   0.0   5.3e-55   3.1e-51       8     249 ..    2454    2693 ..    2448    2694 .. 0.95

  Alignments for each domain:
  == domain 1  score: 174.6 bits;  conditional E-value: 5.3e-55
                      CSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHH..HHHHCHCHCCH CS
  PI3_PI4_kinase    8 vgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasves..lrvaldkkklk 98  
                      ++ddlrqd  + qvf+ ++++l++++ +++r+l ++ty+v+pl+ ++giie+v+++ +++  l   ++  ++ p+ +  s  +++  d ++  
      KKY21167.1 2454 GNDDLRQDAIMEQVFEQVSNLLQGHRATRQRNLDIRTYKVLPLTANAGIIEFVQNTIPLHDYLLPAHQ--KYHPKDMKPSqcRKYIADAQNRS 2544
                      4699********************************************************99998885..58888888876778888888888 PP

                      HHHHCCHHHHHHTSSTTHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCCTCSHCSSSS-. CS
  PI3_PI4_kinase   99 kekklkfekrtalkpksgllqeFvkkspsaeewlearkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGlilpdewkllpfpq 191 
                      +e ++  +k+ + +++ +++ +F++++ ++ +w++ r  + rs a +s+l+++lg+gDRh +Nil+d+++g+++hID G ++ +++++lp+p 
      KKY21167.1 2545 VETRVSTFKKVTDQFQPVMHYFFMERFIDPSDWFQKRLAYSRSTAAISILGHVLGLGDRHGHNILLDQQTGEVVHIDLGVAF-EAGRVLPVP- 2635
                      88888899999***********************************************************************.*********. PP

                      SSSSSS-THHHHHHTSTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCSSC CS
  PI3_PI4_kinase  192 ekvPfrltrelvlaidpskdeglfresceealealrrdqnlltrllkkavkdglilwe 249 
                      e vPfrltr+lv+ ++ ++ eg fr++c  +lealr+d++ ++++l+   +d+l +w+
      KKY21167.1 2636 EVVPFRLTRDLVDGMGITGTEGVFRRCCNFTLEALRTDSDSIMTILDVLRYDPLYSWS 2693
                      ********************************************************97 PP

>> TAN  Telomere-length maintenance and DNA damage repair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.2   0.3   3.1e-43   1.9e-39       1     150 [.       6     153 ..       6     154 .. 0.94
   2 ?   -0.8   0.0      0.25   1.5e+03       6      55 ..     528     586 ..     525     644 .. 0.57
   3 ?    2.1   0.1     0.033     2e+02       8      52 ..    1694    1766 ..    1691    1768 .. 0.82
   4 ?   -2.1   0.3      0.62   3.7e+03      16      45 ..    2162    2195 ..    2156    2293 .. 0.61

  Alignments for each domain:
  == domain 1  score: 135.2 bits;  conditional E-value: 3.1e-43
         TAN   1 lkealrlLssskikeRnkaldeLkhllsskrnktslsdlkdkawheifeaLfklvekEkeaylkkkkssttks.aaasRLskaasalRllvekavsklk 98 
                 +++al++Lss+k keR ++l+ L+++l++ + +++ ++++d+  h++feaLf++v  Ek++++++++   +k+ +   RLs+aas++Rl+ve a+++++
  KKY21167.1   6 IESALDRLSSDKSKERLDGLNGLERVLKNIKGRSNVQNINDEGSHRVFEALFRFVRVEKSSFVQSST---SKArTHGPRLSSAASVVRLAVEVANERIT 101
                 6789**********************************************************88444...44423456********************* PP

         TAN  99 rktlkalldhitqllpgpdgelleplaldyikaLrsllsvpphvehLskeqW 150
                 +kt++a++dhi+++l +p ++++e l++dy++aL++ll + ph ehL+  +W
  KKY21167.1 102 TKTVNAIIDHILDSLTAPGSSIFEILVEDYLRALSTLLLYAPHAEHLRTAKW 153
                 ***************************************************9 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.25
         TAN   6 rlLssskikeRnkald.....eLkhllsskrn....ktsls...dlkdkawheifeaLfklv 55 
                 +l+++  ikeRn+ l       + + l s++n    +       +l++++w+ ++  L++  
  KKY21167.1 528 ALIEALHIKERNQDLIqyvlrGVSQKLPSPKNqevsT---PtdyTLGGRTWDILVVNLLHQK 586
                 6889999999999887454432222222222234433...0445999999999877666543 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.033
         TAN    8 LssskikeRnkald.........................eLkhllsskrn.ktsls..dlkdkawheifeaLf 52  
                  L  s+i +R+k ld                         +L h ++s+r  ++s +  d + k++h+ife L+
  KKY21167.1 1694 LGESTIADREKWLDidfsdaanaailcymweaalllveiHLSHTTKSSRSrRSSVNqiDEQMKSLHAIFENLQ 1766
                  56678888888888888889999999999999998888899999999988544444679999********997 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 0.62
         TAN   16 RnkaldeLkhllsskrnktsls....dlkdkawh 45  
                  ++k++++L++++++ + k++++    + k k+w 
  KKY21167.1 2162 KEKEVQDLEKMIKRAEGKQRDAlkihRTKAKQWF 2195
                  4578999999999998843333445555555543 PP

>> FATC  FATC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.17     1e+03       1      15 [.    1419    1433 ..    1419    1435 .. 0.86
   2 ?   -3.2   0.0       1.3   7.9e+03       6      21 ..    2469    2486 ..    2467    2486 .. 0.85
   3 !   42.9   0.1   5.2e-15   3.1e-11       2      31 ..    2761    2790 ..    2760    2790 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.17
        FATC    1 pLsveqQVdrLIkeA 15  
                  pLs+++QV +  + A
  KKY21167.1 1419 PLSTSEQVLMILSDA 1433
                  8*******9988877 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.3
        FATC    6 qQVdrLI..keATdpeNL 21  
                  +QV+ L   + AT  +NL
  KKY21167.1 2469 EQVSNLLqgHRATRQRNL 2486
                  799999988899999988 PP

  == domain 3  score: 42.9 bits;  conditional E-value: 5.2e-15
        FATC    2 LsveqQVdrLIkeATdpeNLaqmyiGWcPw 31  
                  Lsve++V++LI+ ATd +NLa +y+GW+++
  KKY21167.1 2761 LSVEATVNELIQAATDERNLAVLYCGWAAY 2790
                  9***************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2791 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.37u 0.36s 00:00:01.73 Elapsed: 00:00:00.57
# Mc/sec: 14643.26
//
Query:       KKY21168.1  [L=1660]
Description: putative nuclear pore complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
          0 1105.1   7.2          0 1104.8   7.2    1.0  1  Nup192      Nuclear pore complex scaffold, nucleoporins 186/1
  ------ inclusion threshold ------
       0.25    9.9   1.6       0.32    9.5   0.1    1.8  2  ADP_PFK_GK  ADP-specific Phosphofructokinase/Glucokinase cons


Domain annotation for each model (and alignments):
>> Nup192  Nuclear pore complex scaffold, nucleoporins 186/192/205
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1104.8   7.2         0         0       3    1693 ..       4    1639 ..       3    1640 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1104.8 bits;  conditional E-value: 0
                  HHHHHHHHHHHHHHHTT.XTTHHHHHHHHHHTHHHHHHTTXXXXXXHHHHHCHCC..XSEEEETTE.EEEXXHHHHHHHHHHHHHHTXXHHHHHHHH CS
      Nup192    3 peafkeLynsieaassn.pesldelelllkklkqdLknllknppkneksRsqlkkektgkitlsdgseyklnqefiqealiLSdeldLdElaaaeLl 98  
                  ++++ eLy+++ + s++   ++d+l  +l++ +qdL+ ll++++k+++sR+ql++   gkit++d   +++n ef q al ++d l+LdEl+aa+L+
  KKY21168.1    4 LNRLNELYKDLVNFSESrLANVDRLWIELEESIQDLRGLLDKKSKSDTSRKQLES---GKITIDDL-DFQVNNEFKQIALEVADSLQLDELEAAKLV 96  
                  67899***********9888*********************************77...********.999*************************** PP

                  HHHCTHHH.HTTSXHHHHHHHHHHHHHHHHHHHHHHHHHHHT..XTTSXH............TTXXXXXX....XXXHHHHHHHHHHHHHHHHHHHH CS
      Nup192   99 ltaqeqqankpglslgevAvllYydrrkyilqiLryllqvaseeeedeek............llsswste....atklvtnileslkeikqllsklk 179 
                  l  qe++       ++ v+  ++++rr+ +lq Lr++l+ +  + + +e+            +l+ ++t      + +++++l++l+ i++ l  l 
  KKY21168.1   97 LRYQEETN-GTAQNMVMVSAARFHERREVLLQDLRLVLKESL-DVD-TEDgielrmqdavanILD-TKTGppsnGSLYARKCLTALDGIEKTLVGLG 189 
                  *9998777.99999*************************433.333.333578887776544333.444468865667889**************** PP

                  HHHHHHHHHHHHSXXTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXXXHHHHHHHHHH.HHHXXXXSHHHHHHHHHHHHHH...TSSSSXXXHHHH CS
      Nup192  180 dlldkadvlkeiqknrflgsikfrrdlLekehelLaqilfglvaqsglekedilkllkhLakkldknDdltlhllpallaaf...ssledlsvledv 273 
                  ++ +ka+vl++ q    l+ i+ ++++L ++he+L+ il++l+  +++ +ed++kl ++ a+k d+ D lt+h+lpa+ a +   +s+++ ++l+d+
  KKY21168.1  190 EQTNKARVLGQQQADFLLEFIEVQKTSLMRQHEALGAILTYLFRGNYTISEDLRKLSDL-ARKRDRFDSLTIHYLPAIAAGIeqyGSADGSGNLRDA 285 
                  ***********5555569****************************************8.*99******************99999*********** PP

                  HHHHHHHTSSSTTSSSHH.............HHHHHHHHHHHHHGGG....HHHHHHHHHHHH..........HHHHHTTHHHHHHHHHHHHSXXSS CS
      Nup192  274 relhekitkrleeeplvsdeeidlskwklkglkaaiklvflleligw....ckqepeertkkfdfkedieklieeaiedgafefllsvaaetsakew 366 
                  r+lh++++ +    +       ++s+w l++l+aa+ l++++e+++w     +++p e ++  +  e+  kl+  a++dga+e +l+v+ +++ +e 
  KKY21168.1  286 RSLHKTLFGSP---E------GQQSHWTLPPLHAAVTLIWIAEYSSWyrdpGRASPLEGVDLTKEAEERSKLVARALDDGALECMLAVCGAVRPEER 373 
                  *********99...2......3468**********************77776667777777787888888999************************ PP

                  XXGGGTTTTXXSXXXSXXXXSXSXXXXHHHHHHHHHHHHHHHHHHHHHXHHHHHHHHHHHHHHH..HHXTTS.............TXXXHHHHHHHH CS
      Nup192  367 edslrydfrslLqrkiprltpeklllseefeefllrrlhtlitdfIsnmafvLtkLRdreedsllsveslqqegleppanleediaqkadLErflll 463 
                   d +r ++  lL +++  l+ +  +  e+f++ l++ ++ + ++ I+nm++ ++kL+ +e++++l  ++  q  +++++  +    ++++LE++++l
  KKY21168.1  374 LDAARQEILTLLLNDTNGLALDGDVPTEYFTSILMESFEGFAEAWITNMPDDIRKLKVEEDEQRLHKLTDVQGAVSQNPLHDVLDDTRLHLEALFVL 470 
                  *****************************************************************99999886655555444444679********* PP

                  HHHHHTTXHHHHHHHHSXTTSHHHHHHHHHTSSXXHHHHHHHHHHHHTTXSSHHHHHHHHHHHCXTTXSSXSSTTTBXXSHHHHHHHHHHHHHHHXX CS
      Nup192  464 iaylYenrpelaleFWsdkesnlygFiewassllpsplikaflkMLssLssgeenaraafnlLkdnsssagkkkrsssvswdhifksLsyYidklqe 560 
                  ++++Ye rp++a  FW d+e nlygF++was++++ p  +af+++L++L++g+e a++a+++L ++s++++  ++  s+++ +i+ +L+ Y++k++e
  KKY21168.1  471 MSFAYEFRPDAADRFWGDPEGNLYGFLQWASRRQTVPRASAFCELLCALAQGDEPAASAHKFLLEESMTTTRARKMPSLNYGQIVAELQLYATKVNE 567 
                  ********************************************************************999************************55 PP

                  XXXX.XXXXXXXX.........XXXSXXXHHHHHHHHHHHHHHHHHHHHXHHHHHHHHCXTTTXHHHHHHHHHTSSXXHHHHHHHHHHHHHTTS.XX CS
      Nup192  561 pendlklrqkkqeneesiyrsraieeeleeeeivflsaflrLissvaknseearkallenaswqfldvllgLlsckvptpLkaailktLsaLvk.ks 656 
                     +    + +++   ++yr+++i+   e e+ v+ls++lrLi++ + +  ear + l++++++f++++l L s++vp+ L+a+++k+L+aL++ k+
  KKY21168.1  568 --RS---VTSRPM---NEYRANQIPDLNELESPVMLSCYLRLITHMCIETVEARAFFLDTKDFSFVQTVLLLSSGPVPSYLRATVFKVLEALLTqKT 656 
                  ..33...355666...78999999977777****************************************************************888 PP

                  HHHHHHHHHHHHHHHHXXXXXXXXXX.XXXXXXXXHHHHHHHHHHHHTSSHHHHHHHHHHHHHHTSXTTXSSSXXSSXSSXTTTTTTTSSSSSHHHH CS
      Nup192  657 eeeaakiWrsLDrwifkgsqllptvp.ttsakkqsgsleekeafesrletysevraflqLlkaLlqpleseseakgklpfPedLGagyRkpGiepYl 752 
                  ++  + iW+ +D+w ++++     +p +t++++qs+ ++ ++ fe ++ ++++ +af  Ll+aL+ p+++  +   +lpfP dLG+ yR+pGiepY+
  KKY21168.1  657 SSINNDIWTLVDSWASGALLEKI-NPsKTTQHPQSPKATLHQTFEAIAVNFDQANAFASLLRALTAPPNDA-TGPANLPFPPDLGSTYRMPGIEPYV 751 
                  888**************864433.3448888888888999*************************866665.6699********************* PP

                  HHHHH.HHHTGGGGXXXHHHHHHHHHHHHHHHHHHHHTSXHHHHHHHCCTTTTSSSSTTCHHHHHHHHHSTHHHHHHHHTSHHHHHHHHHHHXXXHH CS
      Nup192  753 dfvldevflkstrdlkdpaekwelqlsclelletsLasfdpslllfseqaginldslvstsdlatyvklhgfaavlnllfkekvlklllkiieegvd 849 
                  df++++ f k+  +l d+ + ++l  +cl+++  +L++fd++ll+ s++ +    s+ ++s +a y++ h++++v+ ++++++v+k++l+ ++++++
  KKY21168.1  752 DFIVGHLFGKRAPELPDEVQIRSLYFNCLNFAAACLETFDEKLLIVSHSPSSRSVSSRQSSIVADYIHRHPCTRVMDWMYNNDVIKSVLQALHQEAN 848 
                  **********************************************99999955478888************************************* PP

                  HHHH.SXTTSHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHCXXXXXXXSXTTXSSHHHHHCCXTHHHHHHHHHGGGTXHHHHHHHHHHHHHH CS
      Nup192  850 eldsyasgkseleelvllaLeilekvLelQetfleellpilkkkeniyrpknvgsaglssfedillfnLslvlnialYvgldnpeialaslkiLeki 946 
                   ld+ as+   ++ ++++++ ++++vLelQ  +l++l+p  k   +  ++ +v++++++ fed+++++ +++ ++a Y +++++ + l s ++++ i
  KKY21168.1  849 VLDT-ASPFGLVVAVLQRSIDVVQLVLELQPSYLDILRPAAK--RSPSQSPTVANSAIAAFEDTIVSHPTVLSDLAMYASTNHETLVLRSFSLIRII 942 
                  ****.88899*******************************4..5667788899999**************************************** PP

                  TTXTTGGTSSXXXXXXSXHHHHHHHHSSXHHHHHHHHHHHHHSXX.XTTTTTSXHHHHHHHHHHHHHHHHHHSSTTSXXHHHHHTTXXXB.TBXXXX CS
      Nup192  947 ssspkvsassasrllkknklltvfesvdeserIkqgfveqLeaeiedeeqeeeeealqiKlaILdlLnsnLsasskeptvahfLLGfdvr.ndlslg 1042
                  s+s+++    ++r++    +  ++++++     + ++  +L+ ++++ e++++ +++  KlaILd+Lns+Ls s+++ +vah +LGf     + +l+
  KKY21168.1  943 SNSRRL---MSGRKSAGRSAFDLLKTSSFVRIASLSMLPKLQIDVRELEHGPSTPEYRFKLAILDFLNSCLSLSPNDRSVAHIFLGFTAVpGSYDLN 1036
                  ***999...45677777888888888877776778*****************************************************999999999 PP

                  ...TTSTTTTTXSHHHHHHHHHTTXXXXXTTSX......BXHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHT.THHHHHHHHXXXXXTTXXBTT CS
      Nup192 1043 neqqsgviasqssllhsllsllesslelisegdksrgskideaparLaekileillkLcrnpltseltLryLretefllrhllslppkidentlWng 1139
                    +     ++  ++lh+++ l +++++ + e       ++  +++++++++ e+l +L+ +p +s+++ ++Lr+  +l ++ ++ ++ ++ ++lW+g
  KKY21168.1 1037 LLD-----DEMVTVLHAIIGLADNYPDGEAE-------SMLSWLIQIKSLAAEVLRRLWVCPPSSAVVRSELRAARYLPSQFAKQQL-VNSQSLWDG 1120
                  444.....8889**********555555533.......5**********************************99677766666655.6999***** PP

                  BXTTS.....TTSTTSTTHHHHHHHHHHHHHHHHHHHHHTTTTTSSSXHHHHHHHHHHHHTEE.XSSSSE..XXXTTTSXXSXXTTSXGGSXXXXHH CS
      Nup192 1140 qefdgslssnkeflssesigallsFlnqrslllqylslelhslsqsgstskkkrlvdlLlgsn.taeeeengspkildlLdvlnfefkekeeqpqle 1235
                  +++ +      e++ s+s++a+ +Fl++rs+l +y+ +el+s++ s+ ++   + +++L+g++ ++ ee+ ++p+++dl+d+ n++f  ++ +p+l+
  KKY21168.1 1121 RSILD-----PEIWLSDSANAINEFLRYRSFLYEYAITELRSVAHSRLPTLQLQTLSTLMGKSkFE-EEQVEHPTVFDLFDFANLDFGADLLSPDLQ 1211
                  *****.....*****************************************************777.55668************************* PP

                  HHH....HTTXXXXBXXXXX.XXXBXXHHHHHHHHHHHHHH..XSSXSHHHHHHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      Nup192 1236 ffdkvnlellLdkceekdadsgnklydisklekllrleksslkqlvqseskagqekeimaEiekileyavklnrqkelreaqlkvLhsWvqLvqvlv 1332
                  ++     +++L+ c  + ++++++++d+  +e+ll+l+  +l+ ++ + +  + +++i aEi  +l+++ ++n++ + +++  ++Lh W +Lv v +
  KKY21168.1 1212 YLA----DVNLEPCVSELQEGADQIFDLGAVEELLQLKVIELS-MEGKVRLGQDDDHIVAEIGALLSFLKARNQRATAQASYSQALHMWSKLVIVTL 1303
                  ***....9******999999999***************65555.8888888888899**************************************** PP

                  HHSXXXSHHHHHHHHHHHHHHHHHHHHHTTTXHHHHHHHHHHHHHHHTTXXXXXXXX...XXXXHHHHHHHCCTTHHHHHHHHHHHHHT-S-HHHHH CS
      Nup192 1333 sdgelsseersnfilevlqkilpkindyveediqfaeelaslvsvllfdlyeklrqsikkseeqketgnlsserLlqlfktciegIlssestqkLRs 1429
                  +++ +s+e++ +f ++++q ilpk+ +++  +++ a +la++v  +l   ++   q+    +e+ ++gnl ++rL+q+f+ +++g+  +   ++LR+
  KKY21168.1 1304 ESTPMSEEQKIQFHMQAFQVILPKLDSFLLNSPAQALDLATMV-DTLTASLNVIEQTV---DEN-RVGNLANDRLYQIFRMMLQGVHGPIAIPELRE 1395
                  *******************************************.77776666665655...344.48****************************** PP

                  HHHHHHHHHHHTTT---HHHHH...........HHHHHHHHHHHTHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH.TT---H.HHHHHHHTTHHH CS
      Nup192 1430 dlYvlllnyLqieasetskanlslke....eslkkeilqiiksygekLieviCnDaitgegvcritalllLdsLvelsssnksnfilellvknnyLk 1522
                    Y +++++L ++          +k     ++ ++++l++ik++g++L+ v+C+Da  g+g+cr  al+ L+s+v l++ +ks++++++lv  n+L 
  KKY21168.1 1396 ASYNICSRFLDRI----------QKPgpiySKSRAHSLEAIKAAGTRLLTVMCDDADVGDGTCRLSALTALNSFVCLGKLEKSTYVVDTLVYFNFLE 1482
                  ************3..........22223435789*******************************************9999**************** PP

                  HHHHGGGGHHHHHH---------------HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTSSSS-SS---...--S-SSHHHHH...HHHHH CS
      Nup192 1523 llvrslkrtdealqeilkpdpesldalyetvfesklalLirlAqtrkGAeqLLqnklfsvlkeckflaidPDlglkinsldnpllskalnnteryfe 1619
                  +l++ +k++ ++lq++ ++  e +++   t ++ +l+lL++++qt+ GA++LL+++l+ +++ + ++++dPD+gl   ++dn   ++al   ++y++
  KKY21168.1 1483 VLIDPIKSIASDLQQANAE--EVISST--TLLQVRLSLLLQISQTKVGARYLLDSGLLPAIRGSLLFNADPDMGL---DIDN---PEAL---QKYYS 1566
                  ************7766655..448888..99********************************************...9***...5777...9**** PP

                  HHHHHHHHHHHHHHTT-STT...HHHHHHHHHHTTTHHHHHHHHTT....---HHHHHHHHHHHHHHHHHHHHT CS
      Nup192 1620 llvpvlqLitaillSlGssnksaieqvrklLkahrdlvvgvLKrdalpesklgkeeeeegLkelaklfvllatl 1693
                  ll+ vl+L+++  + +G++n++  +q+r++L +hr  ++g++Kr   +  +++ ++++++L+++++ ++ l t+
  KKY21168.1 1567 LLASVLSLLASTFVHRGAHNEQIQNQMRQFLLDHRSHMTGMFKRYSGIGASES-KHTSNELDDIIRSYTALLTM 1639
                  *******************************************9995555555.34444899999998888776 PP

>> ADP_PFK_GK  ADP-specific Phosphofructokinase/Glucokinase conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.12     1e+03     249     299 ..      78     134 ..      63     148 .. 0.70
   2 ?    9.5   0.1   3.6e-05      0.32     262     352 ..    1267    1353 ..    1265    1372 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.12
                 CGGG-SEEEE-HHHHHHHHHHTT-......HHHCCSS...CC--HHHHHHHHHHHHH CS
  ADP_PFK_GK 249 ilpyvdslGlnEqElanllsvlgg......eekeltevsdkepriakvlealrkllk 299
                  l+ +dsl l+E E a l+   ++      +++ + +++  ++r + +l+ lr +lk
  KKY21168.1  78 ALEVADSLQLDELEAAKLVLRYQEetngtaQNMVMVSAARFHERREVLLQDLRLVLK 134
                 46679*********9888766544455655555566666666666667777766666 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 3.6e-05
                  HHHHHHHHTT-HHHCCSS...CC--HHHHHHHHHHHHH.....HHTT-SEEEEEETTEEEEEEETTSSS-HHHHHHHHHHHHHHHHHHHHH CS
  ADP_PFK_GK  262 ElanllsvlggeekeltevsdkepriakvlealrkllkllkkskkrkltrihvHtlayqiiltkkesewkneaakkalakaallAarkacn 352 
                  E+  lls l++++++ t +++++++  ++  +l+ +    +++  ++ ++i++H+ a+q+il k +s + n+ a +al  a+++ +  a+ 
  KKY21168.1 1267 EIGALLSFLKARNQRAT-AQASYSQALHMWSKLVIVTL--ESTPMSEEQKIQFHMQAFQVILPKLDSFLLNSPA-QALDLATMVDTLTASL 1353
                  78888888866666653.34444444444444444433..455666889**************99998888888.8999999887666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.06u 0.39s 00:00:01.45 Elapsed: 00:00:00.54
# Mc/sec: 9318.29
//
Query:       KKY21169.1  [L=309]
Description: putative bzip transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-11   43.2   6.7    6.8e-11   42.1   6.7    1.6  1  bZIP_1      bZIP transcription factor
    6.5e-06   26.1   5.5    1.4e-05   25.1   5.5    1.6  1  bZIP_2      Basic region leucine zipper
     0.0076   16.4   2.8      0.013   15.6   2.8    1.4  1  DUF3408     Protein of unknown function (DUF3408)
  ------ inclusion threshold ------
      0.036   13.6   6.0       0.05   13.2   6.0    1.1  1  ASD2        Apx/Shroom domain ASD2
      0.037   13.8   5.2      0.056   13.2   5.2    1.3  1  SAGA-Tad1   Transcriptional regulator of RNA polII, SAGA, sub
       0.88    9.6   7.5          1    9.4   6.6    1.5  2  MDFI        MyoD family inhibitor
          4    6.0   9.4        4.9    5.7   9.4    1.1  1  Ndc1_Nup    Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   6.7   2.7e-14   6.8e-11       5      63 ..     181     239 ..     177     240 .. 0.95

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 2.7e-14
                 XXXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   5 KrekrkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLkseleelkkevekLkskv 63 
                 Kr k +++NR+aA+++Rq+K++ +++Le+r+  L++  ++L+  +++l++ev +Lk +v
  KKY21169.1 181 KRSKFLERNRIAASKCRQKKKEWTSNLEQRARDLQQNKANLSLLVNSLRDEVLYLKGEV 239
                 99999***************************************************886 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   5.5   5.5e-09   1.4e-05       3      44 ..     179     221 ..     177     238 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 5.5e-09
                 XXXXXXXX.XXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2   3 deyrerRr.kNreAarrsRekkkakeeeleervkeLeeeNaqL 44 
                 de+r +   +Nr+Aa ++R+kkk+ + +le+r+ +L++ +a L
  KKY21169.1 179 DEKRSKFLeRNRIAASKCRQKKKEWTSNLEQRARDLQQNKANL 221
                 667777777****************************999888 PP

>> DUF3408  Protein of unknown function (DUF3408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   2.8   5.2e-06     0.013      12     117 ..     120     228 ..      97     235 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.2e-06
     DUF3408  12 vkkiplkskpeeeetpakeekeeakeeeeeeaeeeeekekkekkkrisekkr........ktsledYeetFLkrkklkaRksvYisrelheklarIvrv 102
                 ++++p++ ++e++ ++++++k++++++++++++++++++ +++++r     +         + +++ +++FL+r+++ a k+   ++e    l++  r+
  KKY21169.1 120 NEPSPVSLDTEKPVQQPSRKKRGSQQSQASQVSTRSAPKRRKSSAR-----KsstdttssVDGQDEKRSKFLERNRIAASKCRQKKKEWTSNLEQRARD 213
                 3444444445566666666666666666666655555554444444.....3344457778999999******************************** PP

     DUF3408 103 lgerkmsvsayvdni 117
                 l ++k+++s +v+++
  KKY21169.1 214 LQQNKANLSLLVNSL 228
                 **********99987 PP

>> ASD2  Apx/Shroom domain ASD2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   6.0     2e-05      0.05      44     160 ..     141     260 ..     113     265 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2e-05
        ASD2  44 keleeaekkkk.....eeeekkeeeekseasslesssayystsaakaelltklkdeteleekdeeeek.seeeedldlkekkeeL...ieslskklevL 133
                 +  +++    +     ++++ k++++++++ss++++s+   + ++++++l++ +  +++ +++++e + + e++  dl++ k++L   ++sl++++  L
  KKY21169.1 141 RGSQQS----QasqvsTRSAPKRRKSSARKSSTDTTSSVDGQDEKRSKFLERNRIAASKCRQKKKEWTsNLEQRARDLQQNKANLsllVNSLRDEVLYL 235
                 111111....11223233333333334444444455555555566666666444444444444444442334444688888877654577777776666 PP

        ASD2 134 keeqealleeikanealgeevealvke 160
                 k   e l++++ +++al++ ++  v++
  KKY21169.1 236 KG--EVLKHDTCDCTALRNYMSRSVSQ 260
                 54..57888888888888877777766 PP

>> SAGA-Tad1  Transcriptional regulator of RNA polII, SAGA, subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   5.2   2.2e-05     0.056      58     177 ..      81     232 ..      57     263 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.2e-05
   SAGA-Tad1  58 hLHNqLllsIlkNalrespdclaktppsatakkkks....................................slkkspkksrsgdsqeerlkkrvmslp 120
                 ++HN+L + +++ + +++ +  + tpps +++ +++                                    s+++ p  +r ++s+++  ++ ++s+ 
  KKY21169.1  81 QMHNTLSTNVFSTVNAKMVN-GQVTPPSDNSPVTPKpeilnepspvsldtekpvqqpsrkkrgsqqsqasqvSTRSAP--KRRKSSARKSSTDTTSSVD 176
                 78999999888855223333.222345555555555677777888888888886555555555555554432211111..2333333334666666666 PP

   SAGA-Tad1 121 prdrkrlkaitkeagvlaeesskpkisvvseeetekrekennskewsqeirspvaaP 177
                  +d+kr k ++++  ++++   ++k +  s+ e+ +r+ ++n+ ++s+ ++s     
  KKY21169.1 177 GQDEKRSKFLERNRIAASKCR-QKKKEWTSNLEQRARDLQQNKANLSLLVNSLRDEV 232
                 666666666655533223333.33334444444444554555555666555544444 PP

>> MDFI  MyoD family inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.3     0.018        47      20      81 ..      95     164 ..      78     171 .. 0.47
   2 ?    9.4   6.6    0.0004         1       8     120 ..     128     247 ..     120     264 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.018
        MDFI  20 keksqkgnevltngsg.......vvngvseasaadskklstpvekkl.krklrsslsstsksskkskada 81 
                 ++k  +g+ +++ +++       + n+ s +s + +k ++ p+ kk  +++++ s  st ++ k+ k++a
  KKY21169.1  95 NAKMVNGQVTPPSDNSpvtpkpeILNEPSPVSLDTEKPVQQPSRKKRgSQQSQASQVSTRSAPKRRKSSA 164
                 4555666655555555544444455566666666666666665554432222322222222223333333 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0004
        MDFI   8 pdavelekekedkeksqkgnevltngsg....vvngvseasaadskklstpvekklkrklrsslsstsksskkskadatksqkv...asdDcCvhciLa 99 
                 +++ ++++ +++k  sq++++++   ++     ++++ ++s++ ++++++++ek+ k   r++++ ++  +kk +  +   q++   +++    ++++ 
  KKY21169.1 128 DTEKPVQQPSRKKRGSQQSQASQVSTRSapkrRKSSARKSSTDTTSSVDGQDEKRSKFLERNRIAASKCRQKKKEWTSNLEQRArdlQQNKANLSLLVN 226
                 45555665555555555555444444443444666688888999999999999999888888887766666666667777788788888889999999* PP

        MDFI 100 CLFCefltlcnlvleqasCgl 120
                  L  e+l l   vl+ ++C+ 
  KKY21169.1 227 SLRDEVLYLKGEVLKHDTCDC 247
                 *******************97 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   9.4    0.0019       4.9     345     451 ..      93     212 ..      85     272 .. 0.42

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0019
    Ndc1_Nup 345 eltqrinergq.papkaaps....kapknkasapvkelprlsksplkkk.ddeifgnsltaeaspkssssskegvekalsslakspgqs....psptar 433
                  ++ + ++ +  p++  +p     + +++ ++ +  +++ +++++ kk+ +++  + ++++++ ++++  +k++ +k+ +++++s  ++    +     
  KKY21169.1  93 TVNAKMVNGQVtPPSDNSPVtpkpEILNEPSPVSLDTEKPVQQPSRKKRgSQQS-Q-ASQVSTRSAPK-RRKSSARKSSTDTTSSVDGQdekrS----- 183
                 555555554442222222213333333333444444444444333333332111.1.12222222222.2233333333333333332222221..... PP

    Ndc1_Nup 434 ls............prarkllekaksrlls 451
                  +            ++++k+++++ ++   
  KKY21169.1 184 -KflernriaaskcRQKKKEWTSNLEQRAR 212
                 .12223333333344444444433332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1713  (0.0955435); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.53
# Mc/sec: 1743.22
//
Query:       KKY21303.1  [L=590]
Description: putative ribosomal assembly complex component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-14   53.4   8.7    0.00063   20.5   0.5    5.3  6  WD40             WD domain, G-beta repeat
    0.00067   20.1   0.6        2.8    8.6   0.0    3.5  3  PQQ_3            PQQ-like domain
     0.0059   16.9   0.1        3.7    7.9   0.0    3.8  4  ANAPC4_WD40      Anaphase-promoting complex subunit 4 WD40 do
  ------ inclusion threshold ------
      0.015   15.0   1.1        9.4    6.0   0.0    4.1  4  T2SS-T3SS_pil_N  Pilus formation protein N terminal region
      0.024   13.7   0.0       0.56    9.3   0.0    2.8  2  Fibrillarin      Fibrillarin
      0.027   15.0   0.4         11    6.6   0.1    2.8  2  B_lectin         D-mannose binding lectin


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.6   1.1e+04      25      37 ..     106     117 ..      84     118 .. 0.60
   2 !   20.5   0.5   2.1e-07   0.00063       5      38 .]     126     160 ..     122     160 .. 0.89
   3 !   15.8   0.2   6.7e-06      0.02       1      38 []     176     217 ..     176     217 .. 0.81
   4 ?    0.8   0.0      0.35     1e+03      13      33 ..     232     253 ..     224     255 .. 0.87
   5 !   16.8   0.1   3.1e-06    0.0092      13      38 .]     296     321 ..     284     321 .. 0.91
   6 ?   -3.4   0.0         6   1.8e+04      12      16 ..     337     341 ..     332     347 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.6
                 EEEEETTSEEEEE CS
        WD40  25 lasGsdDgtvriW 37 
                 ++ G+ +g ++iW
  KKY21303.1 106 VL-GMANGGLMIW 117
                 33.7778889999 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 2.1e-07
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  t + H +++t ++ +++++++++Gs D +v++Wd
  KKY21303.1 126 ITNRFHtQPITTVKLHRHSNLILTGSSDTNVHVWD 160
                 566789889****************99*******9 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 6.7e-06
                 TEEEEEEESS.SSEEEEEEETTSSEEEEE...ETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasG...sdDgtvriWd 38 
                 g++lrt+  H   + ++  s+  a+ +++   s+Dgt++iWd
  KKY21303.1 176 GSPLRTFGQHrAAIADIVISSGRAFSVAAisvSKDGTCHIWD 217
                 689*******888****99999999433332489*******9 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.35
                 E.EEEEEETTSSEEEEEETTSE CS
        WD40  13 v.tslafspdgawlasGsdDgt 33 
                 + ts+a +p  + l  Gs+Dg 
  KKY21303.1 232 IpTSIALDPADRVLYIGSEDGA 253
                 6699999*******99****96 PP

  == domain 5  score: 16.8 bits;  conditional E-value: 3.1e-06
                 EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriWd 38 
                 v++la+s d++ ++sG+ Dg+v+ Wd
  KKY21303.1 296 VNCLAVSYDSTVVLSGHSDGKVYAWD 321
                 9***************88*******9 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 6
                 SEEEE CS
        WD40  12 svtsl 16 
                 ++t+l
  KKY21303.1 337 PITCL 341
                 68998 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.1   3.4e+03      22      38 ..     145     161 ..     137     162 .. 0.88
   2 !    8.6   0.0   0.00093       2.8      16      36 ..     235     257 ..     228     259 .. 0.79
   3 !    7.2   0.2    0.0025       7.4      12      38 ..     295     322 ..     285     323 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.1
       PQQ_3  22 glvyvgtgdGtlyAlDa 38 
                 +l+ +g++d +++  D 
  KKY21303.1 145 NLILTGSSDTNVHVWDL 161
                 57899*******99886 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00093
       PQQ_3  16 spavd..gglvyvgtgdGtlyAl 36 
                 s a+d  ++++y+g++dG l ++
  KKY21303.1 235 SIALDpaDRVLYIGSEDGALSSV 257
                 56665559**********99776 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0025
       PQQ_3  12 pvnsspavdgglvyvgtg.dGtlyAlDa 38 
                 +vn+ ++ ++ +v+ +++ dG++yA D 
  KKY21303.1 295 AVNCLAVSYDSTVVLSGHsDGKVYAWDV 322
                 4444445567777777778******995 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.1   3.4e+03      50      75 ..      59      84 ..      43      99 .. 0.75
   2 ?    3.1   0.0      0.04   1.2e+02      29      67 ..     116     161 ..     110     176 .. 0.85
   3 ?   -0.5   0.0      0.52   1.5e+03      42      65 ..     234     257 ..     230     262 .. 0.84
   4 !    7.9   0.0    0.0012       3.7      39      88 ..     294     342 ..     286     345 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.1
  ANAPC4_WD40 50 gklLavaysdgevrlldaesgkvvhs 75
                  +++av  +  +v++++ e+g+   +
   KKY21303.1 59 THIFAVQADRAAVNVYNREKGNQEAQ 84
                 58899999999999999999976555 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.04
  ANAPC4_WD40  29 vwtl.......eedkedsevrsLaWkpdgklLavaysdgevrllda 67 
                  +w++       ++  + + ++ ++ +   +l+  + sd++v++ d 
   KKY21303.1 116 IWEVltgrsiiTNRFHTQPITTVKLHRHSNLILTGSSDTNVHVWDL 161
                  666666677778889999***********************99886 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.52
  ANAPC4_WD40  42 rsLaWkpdgklLavaysdgevrll 65 
                  +s+a  p +++L ++ +dg+++ +
   KKY21303.1 234 TSIALDPADRVLYIGSEDGALSSV 257
                  57888999***********98765 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0012
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  + v++La + d ++   ++sdg+v   d+++ k+ + + v+  + +tcl+
   KKY21303.1 294 GAVNCLAVSYDSTVVLSGHSDGKVYAWDVSKRKLRQVV-VDIGQPITCLQ 342
                  6799***************************9988765.44444599986 PP

>> T2SS-T3SS_pil_N  Pilus formation protein N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0032       9.4      12      38 ..      82     108 ..      79     125 .. 0.78
   2 ?    3.1   0.0     0.026        79      32      61 ..     136     163 ..     134     169 .. 0.85
   3 ?    0.1   0.0      0.23   6.8e+02      30      48 ..     188     206 ..     186     223 .. 0.88
   4 ?   -0.4   0.1      0.32   9.5e+02      39      70 ..     304     333 ..     296     335 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0032
  T2SS-T3SS_pil_N  12 srllrlpepvervavgnpkiadvtvls 38 
                        ++ +p +v+++a+ +++ a + vl 
       KKY21303.1  82 EAQVFFPDKVTSIAIQDEETANFAVLG 108
                      5566799****************9995 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.026
  T2SS-T3SS_pil_N  32 advtvlsprevlltGksvGtTnlivwdagg 61 
                        v+++++ +++ltG s   Tn+ vwd ++
       KKY21303.1 136 TTVKLHRHSNLILTGSS--DTNVHVWDLAH 163
                      56899999999999999..8******9765 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.23
  T2SS-T3SS_pil_N  30 kiadvtvlsprevlltGks 48 
                      +iad++++s+r + + + s
       KKY21303.1 188 AIADIVISSGRAFSVAAIS 206
                      7999999999999998766 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.32
  T2SS-T3SS_pil_N  39 prevlltGksvGtTnlivwdaggrelltldvr 70 
                      + +v+l G s G+  +++wd + r+l +  v 
       KKY21303.1 304 DSTVVLSGHSDGK--VYAWDVSKRKLRQVVVD 333
                      6688888888885..99999999988887765 PP

>> Fibrillarin  Fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00019      0.56      44      84 ..     212     254 ..     184     258 .. 0.80
   2 ?    0.7   0.0     0.077   2.3e+02      84     112 ..     300     331 ..     292     336 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00019
                  EEEEE-TTTSHHHHHHHTT-..S--S--TTSEEEEESTTTSHH CS
  Fibrillarin  44 EyRvWnpfrsKlaaailkgl..kelpikkgskvLYlGaasGtt 84 
                     +W+p  s+l+ +il +   +++ + + ++vLY+G+  G  
   KKY21303.1 212 TCHIWDPTTSQLSRTILLNTipTSIALDPADRVLYIGSEDGAL 254
                  5679*********999866524578899*********998865 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.077
                  HHHHHHHHH...TTTSEEEEEESSHHHHHHHH CS
  Fibrillarin  84 tvsHvsDiv...geegvvyavefsprvlreli 112
                  +vs+ s +v   +++g+vya ++s+r lr+++
   KKY21303.1 300 AVSYDSTVVlsgHSDGKVYAWDVSKRKLRQVV 331
                  556666665333468**************986 PP

>> B_lectin  D-mannose binding lectin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0037        11      24      74 ..     101     160 ..      71     166 .. 0.70
   2 ?    5.4   0.0     0.009        27       9      84 ..     451     529 ..     448     544 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0037
    B_lectin  24 dgnLvllnes..ksvvwst.......ssssssakntvaqLldsGnLvlesssnseevlWq 74 
                 + n ++l  +    ++w         ++  +++  t+++L  + nL+l+ ss+++  +W+
  KKY21303.1 101 TANFAVLGMAngGLMIWEVltgrsiiTNRFHTQPITTVKLHRHSNLILTGSSDTNVHVWD 160
                 3455554322236677777777776556777778889***********999999999996 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.009
    B_lectin   9 ekPikdssgvlkisedg..nLvllnesksvvwst.ssssssakntvaqLldsGnLvlesssnseevlWqsfdhptdtll 84 
                 ++P+ d+s++l  +++g  nL+  + ++++  ++  +  ++a +++ q ld+ nL l++s +++++  + f++  d + 
  KKY21303.1 451 DEPVMDKSSQLPADNSGhdNLTAHDIAQNLSSQSrIRLLEKALAQTRQDLDEANLSLARSVERRSMRQERFEEAADDVH 529
                 78999999999999999545666666666555555566667777788889*******8888888888889999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.55
# Mc/sec: 3237.05
//
Query:       KKY21304.1  [L=269]
Description: putative 60s ribosomal protein l16 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-10   40.4   0.0    2.4e-08   34.3   0.0    2.4  1  Ribosomal_L13  Ribosomal protein L13


Domain annotation for each model (and alignments):
>> Ribosomal_L13  Ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   1.3e-12   2.4e-08       3     123 ..      76     186 ..      75     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.3e-12
                    EEEEETTSBHHHHHHHHHHHHHTTTSTT--TTS--S-EEEEEEGGCBB-SSTHHTT-EEEEE-SS.TTSEEEEEHHHHHCCSHHHHHHHHHHCCS- CS
  Ribosomal_L13   3 yviDAegqvlgrlaskiakvLrGkhkptytphvdcGdyvvvinaekvaltgkkleqkvyyrhtgy.pgglkevtakellekkpeeilekaVkgmLp 97 
                    +viD +g+ lgrlas +ak L              G  +vv+ +e ++++g+  + k  y+   +     + ++   ++ + p +i+ k+V+gm+p
     KKY21304.1  76 VVIDGKGHLLGRLASVVAKQLL------------NGQKIVVVRCEALNISGEFFRAKLKYHAYLRkQTRYNPTRGGPFHFRAPGKIFYKTVRGMIP 159
                    5899999999999999998775............5778*************999988766554330334555666679****************** PP

                    SSH.HHHHHGCTEEEESSSTTSGGGGS CS
  Ribosomal_L13  98 knk.lgrrrlkrLkvyageehpheaqk 123
                    +++  g++ ++rLkv++g   p+++++
     KKY21304.1 160 HKTaRGTAAMERLKVFEGIPPPYDKKQ 186
                    8772577788********999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.49
# Mc/sec: 1664.52
//
Query:       KKY21305.1  [L=518]
Description: putative amp-binding domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-59  202.2   0.0    3.8e-57  193.8   0.0    2.1  1  AMP-binding     AMP-binding enzyme
    6.9e-21   75.0   0.0    1.4e-20   74.0   0.0    1.6  1  AMP-binding_C   AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
      0.013   14.9   0.1      0.033   13.5   0.1    1.6  2  LysR_substrate  LysR substrate binding domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.8   0.0   6.4e-61   3.8e-57      18     422 ..      27     413 ..      13     414 .. 0.80

  Alignments for each domain:
  == domain 1  score: 193.8 bits;  conditional E-value: 6.4e-61
                  CSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCCCHHHHHHHHS CS
  AMP-binding  18 gegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvdselleklleaaa 115
                  ++  + TYre  +r++ +A +L ++G+k   rV+il+ n+p ++ a+++i   Ga+ v +n +l+ae++ayi++++++ +++  vd+e ++ l e  +
   KKY21305.1  27 DKVIRRTYRETADRARGFAYFLNEKGYK---RVGILCTNTPAFLEAIFGIGASGAINVAINYRLKAEDIAYIFNHADVDAIL--VDAEFVDLL-EGFH 118
                  367789*****************97887...7**************************************************..998887655.5555 PP

                  CC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS...............-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSC CS
  AMP-binding 116 kleavklvivldadellkeeelkeeeeseekae...............kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfk 198
                   ++++++ +++d+d  ++ +e  ++ + +   e                  e  ++++++l+ + YTSGTT kPKGV ++hr +  +  s        
   KKY21305.1 119 -RQHPSIPLIVDTDTDATDAERGGDFDRAVL-EglqydrdtgdrgwdgL--EMMAPDENQLIALSYTSGTTAKPKGVEYTHRGAYMA--S-------- 202
                  .368889999998887766555555544433.2467889999****753..34469*************************986555..3........ PP

                  CTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT.-SEEEEESS-E CS
  AMP-binding 199 lkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlss.lrlvllggepl 295
                              + + f +     ++ ++ +t ++l+k +   p  +++l++++++t+++++P+v   l  +++ +      +l   +r++ ++++p+
   KKY21305.1 203 ------------IGWTFPW-----AVTAVRGTHYCLRKIDY--P-YIWKLLKEEHITHFNAAPTVNTLLCTDKNAE------RLAEpVRVT-VAASPP 273
                  ............3455555.....55555555666666655..3.357*******************998854444......677879995.7***** PP

                  BHHHHHHHHHHHTCEEEEEEEEGGGSSECEE.........CHCTTTCTSTTS-B....EE-TTEEEEEE-TTTSCBE...ETTSE.EEEEEEETTS-S CS
  AMP-binding 296 spellrffralfgeevlegYGlTEttgvvtv.........lpleedkkklgsvG....kplpgvevkivDeetgepv...pdgee.Gellvrgpgvmk 376
                  s++l +++ +l  ++ +++YG+TEt g +t          lp++e+ +k  ++G    + lp+  +k   +  g  +   p+gee Ge+++ g+  +k
   KKY21305.1 274 SAHLFEQMTSLNLHP-VHVYGMTETYGPITKgyflpawedLPTREKYAKMARQGhgfvTSLPCRVIKTGVPY-GTIIdvePNGEEiGEIVFLGNICAK 369
                  ***********9885.799*********96666789999977778888888888777644555444433333.3333233577778************ PP

                  EBTT-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 377 gYlkkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                  gY+k+peat++ f   g+ l++GDl++++edG ++i++R+kd+i++
   KKY21305.1 370 GYHKDPEATSKLFA--GGVLHSGDLAVMHEDGAIHILDRAKDIIIS 413
                  *************8..57**************************86 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0   2.4e-24   1.4e-20       2      76 .]     423     499 ..     422     499 .. 0.96

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 2.4e-24
                    HHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHH..HT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   2 vEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrk..elgpyavpkkvvfvdelpktrsGK 76 
                    vEs lv+hp++ ea+V Gvpd+ +Ge+++af++ k+g++++++e+++++++   + +++vp++v++++elpkt +GK
     KKY21305.1 423 VESMLVTHPDILEAGVAGVPDNQWGERPKAFITVKEGKQLTRDEVIEWAKHhsGISKFMVPREVEILPELPKTSTGK 499
                    9*********************************99977799*******8766999********************9 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   5.5e-06     0.033      21      67 ..     110     154 ..     103     163 .. 0.90
   2 ?   -3.1   0.0      0.67     4e+03     105     126 ..     452     474 ..     424     478 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.5e-06
                     HHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCC CS
  LysR_substrate  21 lppllarfraryPevelelvegdseelldllaegelDlairagpped 67 
                     +++ll+ f++++P + l + +++  +  d+ + g++D a++ g + d
      KKY21305.1 110 FVDLLEGFHRQHPSIPLIVDTDT--DATDAERGGDFDRAVLEGLQYD 154
                     5789*******************..***************9987744 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.67
                     EEEEESTTST.HHHHHHHHHHCT CS
  LysR_substrate 105 plilleegsg.lrdlledalrea 126
                      +i+++eg   +rd++ ++ +++
      KKY21305.1 452 AFITVKEGKQlTRDEVIEWAKHH 474
                     58889988889999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3345.54
//
Query:       KKY21306.1  [L=654]
Description: putative ubiquitin ligase complex f-box protein grr1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-13   49.9   8.2       0.97    9.9   0.0    7.7  8  LRR_4           Leucine Rich repeats (2 copies)
      3e-13   48.7  18.9       0.29   11.3   0.0   11.9 13  LRR_6           Leucine Rich repeat
    1.8e-09   37.3   2.0      1e-08   34.9   0.4    2.6  2  F-box-like      F-box-like
    2.8e-06   27.1   0.4      1e-05   25.3   0.4    2.1  1  F-box           F-box domain
     0.0024   17.6   1.5       0.24   11.1   0.1    3.3  4  DUF1699         Protein of unknown function (DUF1699)
     0.0097   16.0   0.0        5.3    7.2   0.0    3.1  2  Recep_L_domain  Receptor L domain
  ------ inclusion threshold ------
      0.018   14.8  10.2        4.3    7.2   0.0    6.2  6  LRR_8           Leucine rich repeat
          2    8.7  15.9         49    4.3   0.1    6.9  7  SAM_Ste50p      Ste50p, sterile alpha motif


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.32   7.3e+02      16      38 ..     145     167 ..     142     172 .. 0.83
   2 ?    0.9   0.0      0.31     7e+02       5      39 ..     156     191 ..     152     195 .. 0.66
   3 !    8.7   1.4     0.001       2.3       1      32 [.     204     239 ..     204     245 .. 0.85
   4 ?    0.9   0.0      0.31   6.8e+02      16      36 ..     248     269 ..     246     277 .. 0.75
   5 !    9.8   0.0    0.0005       1.1       1      38 [.     282     325 ..     282     328 .. 0.78
   6 !    5.9   0.0    0.0082        18       1      37 [.     336     376 ..     336     382 .. 0.73
   7 !    7.7   0.0    0.0023         5       3      38 ..     390     428 ..     388     432 .. 0.84
   8 !    9.9   0.0   0.00043      0.97       2      32 ..     452     486 ..     451     490 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.32
                 -S-HHH-TT--EEE-.-S----- CS
       LRR_4  16 iplleklpnLkeLdLsgNnlitd 38 
                 ++++++++  + L+L++++++td
  KKY21306.1 145 VQPFGSCKRVERLTLTSCSNLTD 167
                 678889*********88877776 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.31
                 EEE--SS.---E-S-...HHH-TT--EEE-.-S-----G CS
       LRR_4   5 vLdLsnN.qltdipl...leklpnLkeLdLsgNnlitdl 39 
                  L L ++ +ltd +    +e++++L+ Ld++    +++l
  KKY21306.1 156 RLTLTSCsNLTDHGVaalIEGNKHLQALDVT---ELGSL 191
                 5555555569997777755579999999983...35555 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.001
                 SS--EEE--SS.---E-S-...HHH-TT--EEE-.- CS
       LRR_4   1 pnLevLdLsnN.qltdipl...leklpnLkeLdLsg 32 
                 p+L+ L+L n+ ++td +l    +++ +Lk L L++
  KKY21306.1 204 PRLQGLNLTNCkKVTDESLipvSQNCRQLKRLKLNQ 239
                 79********978***999854447*********65 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.31
                 -S-HH.H-TT--EEE-.-S--- CS
       LRR_4  16 iplle.klpnLkeLdLsgNnli 36 
                 i++++ ++p+  e+dL+ + +i
  KKY21306.1 248 IQSFAaNCPSILEIDLHACQNI 269
                 5665537*********777555 PP

  == domain 5  score: 9.8 bits;  conditional E-value: 0.0005
                 SS--EEE--SS.---E-S-..HH...H-TT--EEE-.-S----- CS
       LRR_4   1 pnLevLdLsnN.qltdipl..le...klpnLkeLdLsgNnlitd 38 
                 p+L++L L+++ ++td  +  l+    +++L+ LdL+ + li+d
  KKY21306.1 282 PHLRELRLAHCaRVTDDAFtsLSrrmMFDSLRILDLTACELIED 325
                 79********989**733356337866*********88866655 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.0082
                 SS--EEE--SS.---E-S-.....HHH-TT--EEE-.-S---- CS
       LRR_4   1 pnLevLdLsnN.qltdipl.....leklpnLkeLdLsgNnlit 37 
                 p+L++L L+ + q+td        l   +nL++++L ++ +i+
  KKY21306.1 336 PRLRNLVLAKCrQITDKAIsaicrL--GKNLHYIHLGHCQNIS 376
                 789******9978997333455323..499*****98886665 PP

  == domain 7  score: 7.7 bits;  conditional E-value: 0.0023
                 --EEE--.SS---E-S-..HHH-TT--EEE-.-S----- CS
       LRR_4   3 LevLdLs.nNqltdipl..leklpnLkeLdLsgNnlitd 38 
                  +++dL+  N+ltd +   l++lp+L+ + L  + ++td
  KKY21306.1 390 IRYIDLAcCNKLTDDSVkhLAQLPKLRRVGLVKCQQLTD 428
                 68999**889***755579999******99988877765 PP

  == domain 8  score: 9.9 bits;  conditional E-value: 0.00043
                 S--EEE--SS.---E-S-....HHH-TT--EEE-.- CS
       LRR_4   2 nLevLdLsnN.qltdipl....leklpnLkeLdLsg 32 
                 +Le ++Ls + +lt i++    l+ +p L++L+L+g
  KKY21306.1 452 SLERVHLSYCvNLT-IQGvhqlLQACPRLTHLSLTG 486
                 79******988999.7776885556*********66 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.058   1.3e+02       2      23 ..     151     173 ..     150     173 .. 0.87
   2 ?    2.9   0.1     0.066   1.5e+02       2      13 ..     177     188 ..     176     193 .. 0.78
   3 !    5.8   0.0    0.0077        17       1      22 [.     202     224 ..     202     226 .. 0.88
   4 ?   -2.0   0.1       2.3   5.2e+03       1      13 [.     228     240 ..     228     243 .. 0.82
   5 ?   -2.3   0.0         3   6.8e+03       1      23 [.     254     277 ..     254     278 .. 0.79
   6 !    8.0   0.0    0.0015       3.4       3      18 ..     282     298 ..     280     304 .. 0.87
   7 ?    1.6   0.0      0.16   3.6e+02       4      17 ..     311     325 ..     311     328 .. 0.86
   8 !    5.5   0.0    0.0091        20       3      24 .]     336     358 ..     334     358 .. 0.93
   9 !    6.5   0.0    0.0045        10       4      23 ..     363     383 ..     362     384 .. 0.91
  10 !   11.3   0.0   0.00013      0.29       2      24 .]     387     410 ..     386     410 .. 0.93
  11 ?    2.3   0.0       0.1   2.3e+02       3      24 .]     413     435 ..     411     435 .. 0.92
  12 ?    1.0   0.0      0.26   5.8e+02       3      14 ..     451     462 ..     449     472 .. 0.81
  13 ?    0.8   0.0      0.31     7e+02       2      12 ..     476     486 ..     475     486 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.058
       LRR_6   2 nthLteLdLsgNd.IgDeGaeaL 23 
                 +  ++ L L+++  ++D G+ aL
  KKY21306.1 151 CKRVERLTLTSCSnLTDHGVAAL 173
                 66788999****99******997 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.066
       LRR_6   2 nthLteLdLsgN 13 
                 n hL++Ld++  
  KKY21306.1 177 NKHLQALDVTEL 188
                 99******9865 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0077
       LRR_6   1 snthLteLdLsgNd.IgDeGaea 22 
                 +++ L+ L+L+ ++ ++De ++ 
  KKY21306.1 202 NCPRLQGLNLTNCKkVTDESLIP 224
                 5888999************9875 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 2.3
       LRR_6   1 snthLteLdLsgN 13 
                 +++ L+ L L+ +
  KKY21306.1 228 NCRQLKRLKLNQC 240
                 6899****99877 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 3
       LRR_6   1 snthLteLdLsgNd.IgDeGaeaL 23 
                 +++++ e dL  ++ I+   ++aL
  KKY21306.1 254 NCPSILEIDLHACQnISSPSITAL 277
                 588888999988888888888877 PP

  == domain 6  score: 8.0 bits;  conditional E-value: 0.0015
       LRR_6   3 thLteLdLsgNd.IgDe 18 
                 +hL+eL L+++  ++D+
  KKY21306.1 282 PHLRELRLAHCArVTDD 298
                 8**********999997 PP

  == domain 7  score: 1.6 bits;  conditional E-value: 0.16
       LRR_6   4 hLteLdLsgNd.IgD 17 
                 +L+ LdL+ ++ I D
  KKY21306.1 311 SLRILDLTACElIED 325
                 69******9998887 PP

  == domain 8  score: 5.5 bits;  conditional E-value: 0.0091
       LRR_6   3 thLteLdLsgNd.IgDeGaeaLa 24 
                 + L+ L L+ +  I+D+ ++a++
  KKY21306.1 336 PRLRNLVLAKCRqITDKAISAIC 358
                 5799*****************98 PP

  == domain 9  score: 6.5 bits;  conditional E-value: 0.0045
       LRR_6   4 hLteLdLsgNd.IgDeGaeaL 23 
                 +L + +L +++ I+D+ ++ L
  KKY21306.1 363 NLHYIHLGHCQnISDDAVIQL 383
                 7999************99987 PP

  == domain 10  score: 11.3 bits;  conditional E-value: 0.00013
       LRR_6   2 nthLteLdLsgNd.IgDeGaeaLa 24 
                 ++ +++ dL++++ ++D+ ++ La
  KKY21306.1 387 CNRIRYIDLACCNkLTDDSVKHLA 410
                 7889*****************998 PP

  == domain 11  score: 2.3 bits;  conditional E-value: 0.1
       LRR_6   3 thLteLdLsgNd.IgDeGaeaLa 24 
                 ++L+ + L  ++ ++D  + aLa
  KKY21306.1 413 PKLRRVGLVKCQqLTDRSILALA 435
                 789***************99998 PP

  == domain 12  score: 1.0 bits;  conditional E-value: 0.26
       LRR_6   3 thLteLdLsgNd 14 
                 ++L+ ++Ls++ 
  KKY21306.1 451 SSLERVHLSYCV 462
                 89********96 PP

  == domain 13  score: 0.8 bits;  conditional E-value: 0.31
       LRR_6   2 nthLteLdLsg 12 
                 ++ Lt+L+L+g
  KKY21306.1 476 CPRLTHLSLTG 486
                 899******86 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.4   4.5e-12     1e-08       1      35 [.      74     109 ..      74     115 .. 0.91
   2 ?    0.4   0.1      0.27     6e+02      18      34 ..     219     235 ..     214     239 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 4.5e-12
  F-box-like   1 isrLPdEiLlqIFsyL.ppsdLlrlalVCrrWrrva 35 
                 isrLP+E+L+ IF +L ++sdL +++lV+ +W+  a
  KKY21306.1  74 ISRLPPELLISIFARLtSTSDLRNCMLVSHHWAAYA 109
                 689*************8999************9887 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.27
  F-box-like  18 psdLlrlalVCrrWrrv 34 
                 +++L+++++ Cr+ +r+
  KKY21306.1 219 DESLIPVSQNCRQLKRL 235
                 679**********9886 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.4   4.6e-09     1e-05       2      36 ..      73     108 ..      72     110 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 4.6e-09
                 HHHHS-HHHHHHHHHTS-HHH.HHHHCTT-HHHHHH CS
       F-box   2 tlsrLPsevlrhILerLplsd.llalrrVSkgwril 36 
                 ++srLP+e+l  I+ rL  ++ l ++++VS +w  +
  KKY21306.1  73 PISRLPPELLISIFARLTSTSdLRNCMLVSHHWAAY 108
                 8*****************9999***********877 PP

>> DUF1699  Protein of unknown function (DUF1699)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       1.5   3.4e+03      28      48 ..     243     263 ..     223     281 .. 0.75
   2 ?   -3.1   0.0       2.6   5.8e+03      28      50 ..     269     291 ..     253     303 .. 0.78
   3 !   11.1   0.1   0.00011      0.24      10      50 ..     355     397 ..     344     423 .. 0.81
   4 ?    3.6   0.0     0.022        49      20      48 ..     454     484 ..     450     490 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.5
     DUF1699  28 psntdilslvkkcpklkaiqv 48 
                 +s++ i s   +cp++  i +
  KKY21306.1 243 ASDRAIQSFAANCPSILEIDL 263
                 677788888888888876665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.6
     DUF1699  28 psntdilslvkkcpklkaiqvpe 50 
                  s+  i +l+++ p+l+ +++++
  KKY21306.1 269 ISSPSITALMSQLPHLRELRLAH 291
                 56677888999999998888776 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00011
     DUF1699  10 eeietlnenekivHlafrp..sntdilslvkkcpklkaiqvpe 50 
                 + i +l +n +++Hl ++   s++ +++lvk+c +++ i ++ 
  KKY21306.1 355 SAICRLGKNLHYIHLGHCQniSDDAVIQLVKACNRIRYIDLAC 397
                 4688999**********97335667**************9875 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.022
     DUF1699  20 kivHlafrpsn..tdilslvkkcpklkaiqv 48 
                 + vHl+++ +   + + +l+++cp+l  + +
  KKY21306.1 454 ERVHLSYCVNLtiQGVHQLLQACPRLTHLSL 484
                 569*****98622589*********998765 PP

>> Recep_L_domain  Receptor L domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0023       5.3      49      99 ..     154     206 ..     144     218 .. 0.88
   2 ?    5.2   0.0      0.01        23      42      91 ..     302     354 ..     254     374 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0023
                     GTT--EEESSSSBTTTEEEEEES-TT-SBEE-TTTSEESS..SEEEEESETTS CS
  Recep_L_domain  49 lenLrvIrgrelfeskyalaildnknleeLglpslkeits..gsvviskNpkL 99 
                      e+L++ ++++l ++ +a  i  nk+l+ L +++l  +t+   ++v  ++p+L
      KKY21306.1 154 VERLTLTSCSNLTDHGVAALIEGNKHLQALDVTELGSLTDhtFKIVADNCPRL 206
                     678999999******************************98888888888876 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.01
                     T-SSEGCGTT--EEESS..SSBTT.TEEEEEES-TT-SBEE-TTTSEESSSEE CS
  Recep_L_domain  42 nlkslsflenLrvIrgr..elfes.kyalaildnknleeLglpslkeitsgsv 91 
                     +l++  ++++Lr+   +  el+e+  ++ +i + + l++L l + ++it+ ++
      KKY21306.1 302 SLSRRMMFDSLRILDLTacELIEDaAICHIIPQAPRLRNLVLAKCRQITDKAI 354
                     6788899*****99875225666667788999999*************99554 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.2      0.13   2.9e+02      41      58 ..     196     213 ..     152     215 .. 0.54
   2 ?    4.9   0.2    0.0098        22      23      59 ..     254     292 ..     230     293 .. 0.65
   3 ?   -1.2   0.0      0.82   1.8e+03      50      60 ..     311     321 ..     296     322 .. 0.67
   4 ?   -0.2   0.1      0.39   8.6e+02       1      34 [.     336     371 ..     336     383 .. 0.75
   5 ?    7.2   0.0    0.0019       4.3       2      58 ..     363     422 ..     362     424 .. 0.77
   6 ?    1.4   0.1      0.13   2.8e+02      35      58 ..     463     486 ..     451     487 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.13
                 GGGGGTT--S-.EEE--S CS
       LRR_8  41 spgafsgLpsLrsLdLsg 58 
                  + + +++p+L+ L+L++
  KKY21306.1 196 FKIVADNCPRLQGLNLTN 213
                 334445666666666666 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0098
                 T-TT--EEE--SS.---G.GGGGGGTT--S-.EEE--SS CS
       LRR_8  23 glsnLkvLdLsnN.lltt.lspgafsgLpsLrsLdLsgN 59 
                 ++++  ++dL    ++++      +s+Lp+Lr+L L ++
  KKY21306.1 254 NCPSILEIDLHACqNISSpSITALMSQLPHLRELRLAHC 292
                 466666666654444555422567899*********997 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.82
                 S-.EEE--SS- CS
       LRR_8  50 sLrsLdLsgNr 60 
                 sLr LdL+ + 
  KKY21306.1 311 SLRILDLTACE 321
                 57777777665 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.39
                 TT-SEEE-TTS-.-SEE-TTSSTT.-TT--EEE--S CS
       LRR_8   1 pnLtsLdLsnNr.ltslddeaFkg.lsnLkvLdLsn 34 
                 p+L++L+L + r +t+   +a  +  +nL +++L++
  KKY21306.1 336 PRLRNLVLAKCRqITDKAISAICRlGKNLHYIHLGH 371
                 688999999888888777666666567777777766 PP

  == domain 5  score: 7.2 bits;  conditional E-value: 0.0019
                 T-SEEE-TTS-.-SEE-TTSSTT.-TT--EEE--.SS---GGGGGGGTT--S-.EEE--S CS
       LRR_8   2 nLtsLdLsnNr.ltslddeaFkg.lsnLkvLdLs.nNllttlspgafsgLpsLrsLdLsg 58 
                 nL++++L + + +++    +  + +++ +++dL  +N+lt  s + +++Lp+Lr   L  
  KKY21306.1 363 NLHYIHLGHCQnISDDAVIQLVKaCNRIRYIDLAcCNKLTDDSVKHLAQLPKLRRVGLVK 422
                 6667777666667777666666668999999997359*****************988865 PP

  == domain 6  score: 1.4 bits;  conditional E-value: 0.13
                 S.---GGGGGGGTT--S-.EEE--S CS
       LRR_8  35 N.llttlspgafsgLpsLrsLdLsg 58 
                 N +++ ++ + ++ +p+L++L L+g
  KKY21306.1 463 NlTIQGVH-QLLQACPRLTHLSLTG 486
                 55677776.8889999999999975 PP

>> SAM_Ste50p  Ste50p, sterile alpha motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.18     4e+02      42      58 ..     155     171 ..     149     180 .. 0.85
   2 ?    3.0   0.1     0.053   1.2e+02      41      57 ..     206     222 ..     181     238 .. 0.88
   3 ?   -2.9   0.0       3.6   8.2e+03      43      58 ..     260     275 ..     256     282 .. 0.82
   4 ?    0.5   0.0      0.32   7.1e+02      41      57 ..     284     300 ..     266     309 .. 0.89
   5 ?    4.3   0.1     0.022        49      41      61 ..     338     357 ..     333     365 .. 0.85
   6 ?    1.1   0.1      0.22   4.9e+02      38      62 ..     361     385 ..     358     395 .. 0.83
   7 ?    1.3   0.3      0.18     4e+02      44      59 ..     393     408 ..     388     416 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.18
                 HHHHHHHHHHCTTS-HH CS
  SAM_Ste50p  42 seltLqDCkeLcdddlk 58 
                 + ltL  C +L+d  + 
  KKY21306.1 155 ERLTLTSCSNLTDHGVA 171
                 679**********9876 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.053
                 HHHHHHHHHHHCTTS-H CS
  SAM_Ste50p  41 LseltLqDCkeLcdddl 57 
                 L+ l L +Ck ++d++l
  KKY21306.1 206 LQGLNLTNCKKVTDESL 222
                 8999***********98 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3.6
                 HHHHHHHHHCTTS-HH CS
  SAM_Ste50p  43 eltLqDCkeLcdddlk 58 
                 e+ L  C++++  ++ 
  KKY21306.1 260 EIDLHACQNISSPSIT 275
                 899999**99988876 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.32
                 HHHHHHHHHHHCTTS-H CS
  SAM_Ste50p  41 LseltLqDCkeLcdddl 57 
                 L el L+ C  ++dd +
  KKY21306.1 284 LRELRLAHCARVTDDAF 300
                 89************976 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.022
                 HHHHHHHHHHHCTTS-HHHHH CS
  SAM_Ste50p  41 LseltLqDCkeLcdddlkkai 61 
                 L +l L+ C++++d+ ++ ai
  KKY21306.1 338 LRNLVLAKCRQITDKAIS-AI 357
                 789**************9.54 PP

  == domain 6  score: 1.1 bits;  conditional E-value: 0.22
                 CCCHHHHHHHHHHHCTTS-HHHHHH CS
  SAM_Ste50p  38 GsvLseltLqDCkeLcdddlkkaik 62 
                 G  L+ + L  C++++dd + + +k
  KKY21306.1 361 GKNLHYIHLGHCQNISDDAVIQLVK 385
                 77789999*********99876665 PP

  == domain 7  score: 1.3 bits;  conditional E-value: 0.18
                 HHHHHHHHCTTS-HHH CS
  SAM_Ste50p  44 ltLqDCkeLcdddlkk 59 
                 + L+ C+ L+dd++k+
  KKY21306.1 393 IDLACCNKLTDDSVKH 408
                 67999********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.50
# Mc/sec: 3967.87
//
Query:       KKY21307.1  [L=439]
Description: putative lipase 1 precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-63  213.0   0.4    6.9e-63  212.6   0.4    1.1  1  LIP       Secretory lipase


Domain annotation for each model (and alignments):
>> LIP  Secretory lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.6   0.4   3.8e-67   6.9e-63      16     279 ..     149     410 ..     138     416 .. 0.93

  Alignments for each domain:
  == domain 1  score: 212.6 bits;  conditional E-value: 3.8e-67
         LIP  16 lllivplLkeGyyVvvpDyeGpkstftvgrqsgkavLdsiraalksekvtgiksdakvalwGYSgGslAsawAaelqpeYAPelelvGaalGgfvanlt 114
                 l  i ++L +G+yV vpD+eGp + f++g q+g+a+Lds+ra+l +  v g++sd++ ++wGYSgGs+A+ wA+elq +YAPel+  G a+Gg v+n++
  KKY21307.1 149 LSDINTALGHGWYVNVPDFEGPLASFASGVQEGHATLDSVRAVL-FSGV-GLSSDTRYVMWGYSGGSIATEWASELQVQYAPELNFSGMAIGGLVPNMS 245
                 5568899*************************************.4445.9************************************************ PP

         LIP 115 avaeavdgtvfaGlialalnglaneypelkkilkeevneea...realeklsencladalikyagesyltgdkrafekgsdvlkdetikkvlednkl.s 209
                   ++++d t  +Gl++ al g+ n+yp+  + l ++++ ++    + + +  ++   +    ya++s++ +    f +g++vl+++ti+kv++ + l  
  KKY21307.1 246 SALHNIDATPASGLVPAALLGITNQYPDAYHYLISNLKTTGpynATYFLNARNMSYYEDASAYANQSIFDD---YFVQGASVLQHPTIQKVFNSDGLmG 341
                 ******************************99999999887332456888999**************9888...8999*******************77 PP

         LIP 210 ksavPqiPvlvyhgvidelipikdakklaknwcdkgiaslefaedlssgHlaetlvgapaaltWitdRfs 279
                  + vPq+Pv+v ++v+de + + ++++l  ++c++g as+ ++++l+ +Hl e   g  +a +W+++ ++
  KKY21307.1 342 YHGVPQMPVFVHKAVHDEYSAVGETDALVAHYCKAG-ASIRYQRNLIGNHLDEYTNGDAQAFQWLQAVLN 410
                 789*********************************.5***************************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.52
# Mc/sec: 2533.53
//
Query:       KKY21308.1  [L=464]
Description: putative methionine aminopeptidase 2b [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-40  139.3   0.0    1.9e-40  138.8   0.0    1.2  1  Peptidase_M24  Metallopeptidase family M24
     0.0038   17.4   1.6     0.0051   17.0   1.6    1.2  1  YL1            YL1 nuclear protein


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.8   0.0   2.1e-44   1.9e-40       2     208 ..     147     451 ..     146     452 .. 0.88

  Alignments for each domain:
  == domain 1  score: 138.8 bits;  conditional E-value: 2.1e-44
                    HHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTT..........TCEESSSSEEEEGGGGGSTTTBC....SSSB--TTEEEEEEEEE CS
  Peptidase_M24   2 lirkaariasaaleavleaikpgvterelaaeieattlkrhg..........arglafppivasgenaavlhytp....ndrvlkegdlvlidaga 83 
                    ++r+aa++++++++ + + +kpg t  ++a+ ie+ +++ +g          + g++fp+  ++++ aa  h+tp     + vlk++d++++d+g+
     KKY21308.1 147 DYRQAAEVHRQVRQWIQQTVKPGHTMSQIAQDIEDGVRALTGhdglevgdslKSGMGFPTGLCLNNVAA--HWTPnpggKEVVLKQDDVMKVDFGV 240
                    68********************************997777778899999999999****7777665555..999955533444************* PP

                    EETTEEEEEEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTB........CCGBSSCSEEEESS.SSSEE..EEEE CS
  Peptidase_M24  84 eydgyasDitrTvlvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesagl........akffphglGHgvGl.evhde..gpsv 168
                    +++g + D+++T+++   +p +++l++ v+ea++++ik++  ++++s+i+ a++ev+es+++         k +++ +GH +    +h++   p+v
     KKY21308.1 241 HVNGRIVDSAFTMAF---DPVYDNLLASVKEATNKGIKEAGIDARMSDIGSAIQEVMESYEVvingkvlpIKAVRNITGHDIKPyCIHGDkqIPFV 333
                    ***************...999**************************************965667777886788*********88***77345566 PP

                    SSSTTCSSB--TTBEEEEEE.............EEEEETTT....................................................... CS
  Peptidase_M24 169 sresndgrkleeGmvftiEp.............giyfapge....................................................... 196
                    +  +++++k+eeG+vf+iE+             giy   +e                                                       
     KKY21308.1 334 K--NSSNQKMEEGEVFAIETfgttgrgylrddiGIYGYGREasatgknlhlssarsllktiddnfgtivfcrrylerlgvknyllgmnklisngiv 427
                    6..5689**************99999888888877744333566666899999999999999999******************************* PP

                    ............EEEEEBEEEEEE CS
  Peptidase_M24 197 ............ggvriedtvlvt 208
                                +++++e+t+l++
     KKY21308.1 428 qsyaplvdlkgsYVAQFEHTILLR 451
                    **********977********986 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.6   5.6e-07    0.0051      51     105 ..      38      88 ..      13     174 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 5.6e-07
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  51 sdfdsdeedeesdeeedeeegekelerqerkkrkkekkkrkaqkkkskkkkkkqk 105
                  d+   ++d+e++e +d  e e+ ++++e  k+    kkrk+++k +k+ k+++ 
  KKY21308.1  38 DDLGGGDDDDEEEEADDYFEAERLMKNEETGKK----KKRKNKAKRKKRGKTASP 88 
                 355444555555666677777775555555555....555444444444433222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1074  (0.059903); expected 358.6 (0.02)
Passed bias filter:                      742  (0.0413855); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 2938.98
//
Query:       KKY21309.1  [L=1002]
Description: putative peptidase family m28 family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-33  116.7   0.2    1.7e-33  116.0   0.2    1.3  1  Peptidase_M28  Peptidase family M28
     0.0095   15.6   0.0      0.017   14.9   0.0    1.3  1  Peptidase_M20  Peptidase family M20/M25/M40


Domain annotation for each model (and alignments):
>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.0   0.2   1.9e-37   1.7e-33      12     196 ..     178     354 ..     168     356 .. 0.91

  Alignments for each domain:
  == domain 1  score: 116.0 bits;  conditional E-value: 1.9e-37
                    SEEEEEEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHHHHHHHCCCTTEEEEEEECS-SSSS--E CS
  Peptidase_M28  12 devlllgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEagllGSkafakakpelkkiaavlnlDmvgsggkel 107
                       +l++AHyDsv++  g    GA+D+++gv+++L+l+++  +sg++p++g++ l++++EE gllG+kafa  +p +k  ++++nl+ +g+g+++ 
     KKY21309.1 178 RGGVLVNAHYDSVST--GY---GATDDGMGVVTVLQLIKYYSTSGNKPTKGLVALLNNGEEDGLLGAKAFA-LHPMAKFPHTFVNLEGAGAGKRAH 267
                    4579***********..**...*************************************************.************************ PP

                    EEHHHHHHCHHHHHHHHHHHHHTT-TTSCCEEEEESSTT-STTHHHH.TTT--EEEECTSSS-TTTTSTTSSGGGB-HHHHHHHHHHHHH CS
  Peptidase_M28 108 lfesgdkssselekelkalakpvgraaaedpfdersgrgrsDhspfl.kagvpvldlaetgfpevyHtprDtldnidkdtlariaelvle 196
                    +f    ++++e+ + + ++ +p+++ +++d f+ +  r+++D+++f+ + g+ +ld+a+ + + +yHt +D++++  k++l+++  ++l+
     KKY21309.1 268 MF---RATDAEVAQAYGNTDRPFSSVVSSDGFKLGAVRSQTDYVVFNgDLGMRGLDIAFMEPRARYHTDQDDTRHAGKASLWHMLSAALD 354
                    *9...555556666666677777777778******************99**********************************9887765 PP

>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.8e-06     0.017       5      83 ..     186     244 ..     182     354 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.8e-06
                    ES-BSSTTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20   5 HlDvVpeeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle 83 
                    H+D+V                      G Ga+d+  gv+++l++++ +  +g kp + +v l+   EE g  Gaka++ 
     KKY21309.1 186 HYDSVS--------------------TGYGATDDGMGVVTVLQLIKYYSTSGNKPTKGLVALLNNGEEDGLLGAKAFAL 244
                    555555....................36899************************999999999999976699999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1002 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 6691.88
//
Query:       KKY21310.1  [L=252]
Description: putative mfs monocarboxylate transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-10   41.1  28.8    6.3e-10   38.5  25.5    2.0  2  MFS_1          Major Facilitator Superfamily
     0.0006   18.8  14.1    0.00089   18.2  13.9    1.3  1  Sugar_tr       Sugar (and other) transporter
  ------ inclusion threshold ------
       0.89   10.2  12.2        5.4    7.7   0.1    3.5  3  DUF2627        Protein of unknown function (DUF2627)
        1.6    9.2  17.9       0.68   10.3   0.6    3.2  3  ATP-synt_I     ATP synthase I chain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   7.5   4.3e-06     0.019     192     295 ..      24     124 ..       1     126 [. 0.60
   2 !   38.5  25.5   1.4e-13   6.3e-10      25     182 ..      61     225 ..      49     238 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.3e-06
       MFS_1 192 gpaplvpawkallkdpvlwillialllfffgfsglltllply.lqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaal 289
                 g++++++ + a + +  ++i  ia +++f+gf++ +++l +y l +  + +   +a +ll+++ +++++++++  +++d++g+   l+ ++++  l+al
  KKY21310.1  24 GRRQIFQ-LHAYREPA-FLINQIAGFVAFVGFFAPFFYLESYsLAQPQDDK--SIAFYLLPMILAGSFCGRIVPNFFADKTGPFLVLIPGCFISGLLAL 118
                 3333444.34444444.4344555555566888888888887433333333..5555556666666667799999999*****8888888888888888 PP

       MFS_1 290 glalla 295
                 +++ + 
  KKY21310.1 119 CWIAIK 124
                 887765 PP

  == domain 2  score: 38.5 bits;  conditional E-value: 1.4e-13
       MFS_1  25 edlgispseigllltlyalgaavaslplGrl.....sdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpk. 116
                 e++ ++  +    +++y l +++a  + Gr+     +d+ G+  vl+ g ++++l  +l+++a+ ++  l+++ vl G+++g+++++    +++++p  
  KKY21310.1  61 ESYSLAQPQDDKSIAFYLLPMILAGSFCGRIvpnffADKTGPFLVLIPGCFISGLL-ALCWIAIKSTrGLIAFAVLFGFFTGGIVSITPLTVVAITPNy 158
                 55554444444445778888888888888885555577778888888888888887.444445666669****************************** PP

       MFS_1 117 eergraigllsagfslGailg.pllggllasslgWravfyilaivsllafvlfllllpeepperkrk 182
                 ++ g  +g++++g +l++++g p+lg++l + +++ +v ++++++++ ++vl++  ++   +++ rk
  KKY21310.1 159 RDLGTRMGMFMGGGALATLIGaPILGAILNDTGSYLGVQIFCGVLLIAGGVLWIPTYWFATRAHDRK 225
                 *********************888888999*********************8887777666666655 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2  13.9     2e-07   0.00089      19     202 ..      44     221 ..      38     236 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2e-07
                 GGGTHHHHHHHHTSTT--SHHHHHH.....HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHH CS
    Sugar_tr  19 igafltllkfaknfglsksksskee..ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGig 115
                 i++f+++ +f+  f++ +s+s  +    ++    ++ + l+G+++G ++  +++d+ G   +l+ +++++   a++ +a+k   s+  li+  vl G++
  KKY21310.1  44 IAGFVAFVGFFAPFFYLESYSLAQPqdDKSIAFYLLPMILAGSFCGRIVPNFFADKTGPFLVLIPGCFISGLLALCWIAIK---STRGLIAFAVLFGFF 139
                 78888888888888888887754444344455556677889*****************99999999999999999999999...99************* PP

                 HHHHHHHHHHHHHTTS-SCCH..HHHHHHHHHHHHHHHHH.HHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT CS
    Sugar_tr 116 vGlasvlvPmyisEiApkklR..galvslyqlaitfGilv.aaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekg 202
                  G++  ++P+++  i+p   R  g+ ++++  + ++  l+ a i+g++ln+t++       lg+q++  +ll+++++++  + +++ ++ 
  KKY21310.1 140 TGGIVSITPLTVVAITPNY-RdlGTRMGMFMGGGALATLIgAPILGAILNDTGS------YLGVQIFCGVLLIAGGVLWIPT-YWFATRA 221
                 ***************9963.3255544444444444444415688999999999......9*************99777645.6666655 PP

>> DUF2627  Protein of unknown function (DUF2627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.7    0.0077        34       3      56 ..       3      54 ..       1      61 [. 0.84
   2 ?    3.6   1.2     0.022     1e+02      37      60 ..     120     143 ..      90     145 .. 0.86
   3 ?    7.7   0.1    0.0012       5.4      30      62 ..     186     218 ..     176     228 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0077
     DUF2627  3 lialliLvipgllaayGik.lmrdalfgilsspfsslwlqflaGlllfaiglgfi 56
                +ial  L i +l+  + +k   r ++f+  +   ++++++ +aG+++f++   f+
  KKY21310.1  3 FIALATLAISCLVLKLRVKpSGRRQIFQLHAYREPAFLINQIAGFVAFVG---FF 54
                8999999999999999998345999*********************9964...44 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.022
     DUF2627  37 slwlqflaGlllfaiglgfiaGfi 60 
                 +++++ + Gl++fa+ +gf+ G i
  KKY21310.1 120 WIAIKSTRGLIAFAVLFGFFTGGI 143
                 56889999***********99865 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0012
     DUF2627  30 ilsspfsslwlqflaGlllfaiglgfiaGfilh 62 
                 il+ + s+l +q++ G+ll+a+g+  i  + + 
  KKY21310.1 186 ILNDTGSYLGVQIFCGVLLIAGGVLWIPTYWFA 218
                 5677788899***************99988774 PP

>> ATP-synt_I  ATP synthase I chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.6      0.33   1.5e+03      27      51 ..      40      64 ..       1      83 [. 0.54
   2 ?    7.4   4.6    0.0013       5.8      10      46 ..     113     155 ..     105     178 .. 0.82
   3 ?   10.3   0.6   0.00015      0.68      24      56 ..     197     228 ..     173     243 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.33
  ATP-synt_I 27 lsallGglisvlpfalfalrvfrfs 51
                l   + g+++++ f++  + ++ +s
  KKY21310.1 40 LINQIAGFVAFVGFFAPFFYLESYS 64
                3334445555555555555555555 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0013
  ATP-synt_I  10 lavlalgwlltgsas......valsallGglisvlpfalfalr 46 
                   +lal+w+ ++s++      v ++++ Gg++s+ p++++a++
  KKY21310.1 113 SGLLALCWIAIKSTRgliafaVLFGFFTGGIVSITPLTVVAIT 155
                 5577778888866667777779999*************99986 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00015
  ATP-synt_I  24 svals.allGglisvlpfalfalrvfrfsgalar 56 
                 +++ + +l+ g + ++p+++fa+r+  + +++a 
  KKY21310.1 197 QIFCGvLLIAGGVLWIPTYWFATRA--HDRKVAV 228
                 34444356788899***********..7777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.52
# Mc/sec: 1457.98
//
Query:       KKY21311.1  [L=573]
Description: putative atp sulfurylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-86  287.6   0.1    6.9e-86  287.1   0.1    1.2  1  ATP-sulfurylase  ATP-sulfurylase
    2.7e-58  196.4   0.0    4.1e-58  195.7   0.0    1.3  1  APS_kinase       Adenylylsulphate kinase
    1.6e-51  174.2   0.0    2.4e-51  173.5   0.0    1.3  1  PUA_2            PUA-like domain


Domain annotation for each model (and alignments):
>> ATP-sulfurylase  ATP-sulfurylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.1   0.1   1.2e-89   6.9e-86       3     211 ..     174     387 ..     172     388 .. 0.98

  Alignments for each domain:
  == domain 1  score: 287.1 bits;  conditional E-value: 1.2e-89
                      CB.-HHHHHHHHHHTT-SSEEEEEESS---HHHHHHHHHHHHH.TSEEEEEEEB-SB-STTSTTHHHHHHHHHHHHHHHS-GGGEEE-BB-SB- CS
  ATP-sulfurylase   3 yrltPaevreefkekgwdkVvAfqtrnplHraHeellkralee.eadglllhplvgptkpgdvpaevrvrayealieeylpkdrvvlallplam 95 
                      +r+tPae+r++f++ gw +VvAfqtrnp+HraH+el+ ra+++ +a+ +l+hp+vg tkpgd+++++rvr y+al+ + +p+ ++vl ll lam
       KKY21311.1 174 LRYTPAEMRTHFEKLGWTRVVAFQTRNPMHRAHRELTVRAARArQAN-VLIHPVVGLTKPGDIDHFTRVRVYQALMPR-YPNGMAVLGLLGLAM 265
                      89****************************************98888.******************************.*************** PP

                      --SCHHHHHHHHHHHHHTT-SEEEE-TTTT-STC......SS-TTHHHHHHHHCHHHCTSEEEE---EEEETTTTEEEECCCCGCCGGEEE--H CS
  ATP-sulfurylase  96 ryaGprEallhaiirknyGcthfivGrdhagvgd......fYgpydaqellakvagelgiepvkfeeavYckkegevasektchkkeevesisg 183
                      r++GprEa++haiirkn G+thfivGrdhag+g+      fYgpydaq  ++k+++elgie+v+f+++ Y ++++e+  + +   ++++  isg
       KKY21311.1 266 RMGGPREAIWHAIIRKNHGATHFIVGRDHAGPGKnskgvdFYGPYDAQYAVEKYRSELGIEVVEFQQMTYLPDTDEYRPKDQVAAGVKTLDISG 359
                      ***************************************************************************99876666*********** PP

                      HHHHCCHHTT----TTTS-HHHHHHHHH CS
  ATP-sulfurylase 184 telrkllregeeipewfsrpevlkvLre 211
                      telr++lr g +ipewfs+pev+kvLre
       KKY21311.1 360 TELRRRLRVGGDIPEWFSYPEVVKVLRE 387
                      **************************97 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.7   0.0   6.9e-62   4.1e-58       1     157 [.     395     552 ..     395     553 .. 0.98

  Alignments for each domain:
  == domain 1  score: 195.7 bits;  conditional E-value: 6.9e-62
                 S-EEEEEESSTTSSHHHHHHHHHHHHHHTT.--EEEEEHHHHTTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTT-EEEEE----SHHHHHHHHHHHHC CS
  APS_kinase   1 rgvvvwltGlsgsGKstianalekkLvekg.isvylLdGdnvRhgLnkdLgfseedRkenirrvaevaklladaglivlvafisPyreeReaarellee 98 
                 +g++++ltG+ +sGK++ia+al+ + +++g +sv lL G++vRh+L+++Lgf+ edR++ni+r+a+va +l++ag+ v++a i+P++++R+ ar+++++
  KKY21311.1 395 QGFTIFLTGYYNSGKDAIARALQVTFNQQGgRSVSLLLGETVRHELSSELGFTPEDRNTNIQRIAFVAGELTKAGAAVIAAPIAPFEKSRQLARDTISQ 493
                 699**************************989******************************************************************9 PP

                 HTEEEEEEEE--HHHHHHHTTTSHHHHHHTTSSSSHTTTSS-----SS-SEEEETTTS- CS
  APS_kinase  99 alkfievfvdtplevceerDpkglYkkareGeikeftGidspYeaPenpelvvdtdkes 157
                   +f+ v+v tpl++ce++D+kg+Y+kar+Geik+ftG+d+pYeaP++++lvvd++k++
  KKY21311.1 494 YGSFFLVHVATPLDYCEKTDKKGIYSKARRGEIKGFTGVDDPYEAPAKADLVVDVEKQT 552
                 9*****************************************************99876 PP

>> PUA_2  PUA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.5   0.0     4e-55   2.4e-51       2     158 ..       4     164 ..       3     165 .. 0.95

  Alignments for each domain:
  == domain 1  score: 173.5 bits;  conditional E-value: 4e-55
                 S-TTSS----B--CH.HHHHHHHHHHTS-EEE--HHHHHHHHHHHTTTTTT-SCC--HHHHHHHHHHSEETTS-E-SS---EEEECCHCHH..HTT-SE CS
       PUA_2   2 kphggkLvelvvede.ekeellkeakelpsielskrelqdlellaeGgfsPLegFmreedyesvleemrLadgllwsiPivLdvseedakk..lkegdr 97 
                 +phgg L++l+++d+ ++++l++ea++lp+i+l++r+l+dlel+ +GgfsPLegFm+e+dy+ v+e+ rLadg l+s+Pi+Ld+s+e++k+  +++g+r
  KKY21311.1   4 PPHGGILKDLIARDApRHDKLEAEAETLPAITLNERQLCDLELILNGGFSPLEGFMNEKDYNGVVENVRLADGALFSMPICLDASAETIKAkkIQAGSR 102
                 6**************999999******************************************************************987666****** PP

                 EEEEETT.TEEEEEEEEEEEEE-HHHHHHHHHHS---TTSHHHHHHC.TS-SEEEEEEEEE-S CS
       PUA_2  98 vaLkdke.gellAileveeiyeldkeeeaekvfgttdeaHPgvkkvl.eqgevlvgGkvevle 158
                 ++L+d + ++ lAil v+++y++dke+ea+ vfg++ e HP++++++ +++++++gGk+e+++
  KKY21311.1 103 ITLQDFRdDRNLAILMVDDVYQPDKEKEAKLVFGGDPE-HPAIRYLFnQTEKYYIGGKLEAVN 164
                 *****996777***********************9765.********88899********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4115.33
//
Query:       KKY21312.1  [L=303]
Description: putative phosphoadenosine phosphosulfate reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-44  150.2   0.0    9.1e-44  149.5   0.0    1.3  1  PAPS_reduct  Phosphoadenosine phosphosulfate reductase family


Domain annotation for each model (and alignments):
>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.5   0.0   5.1e-48   9.1e-44       2     174 .]      69     247 ..      68     247 .. 0.97

  Alignments for each domain:
  == domain 1  score: 149.5 bits;  conditional E-value: 5.1e-48
                  EEEE--SSCTCHHHHHHHHHHCTTH....EEEEEE-STB-HHHHHHHHHHHHHT.T-EEEEEE-SCHHHHHHHHHH-S-THHHC...HHHHHHTHHHH CS
  PAPS_reduct   2 lvvsvsgGkdslVllhLalkafkpv....pvvfvdtghefpetiefvdeleery.glrlkvyepeeevaekinaekhgsslyee...aaeriaKvepl 91 
                  l++++++G  +lV+l++++k + p+     ++f+dt ++f+et+++v++++++y +++++v++p ++++++   +k+g +l+e+    ++ +aKvep+
   KKY21312.1  69 LFQTTAFGLSGLVTLDMLSKLNIPRpqvvDLIFLDTLYHFKETLDLVERVRKQYpNVTIHVFKPADCETAGQFSAKYGDKLWETdekLYDWVAKVEPA 166
                  678899******************7666689*****************************************************9999********** PP

                  HHHHHCTTECEEE----CCCTTTTTTSSSEEECTTT-SCEEE-CCCT--HHHHHHHHHHCT--B-CCCCTT-SS--BCTTB-S CS
  PAPS_reduct  92 kkaLekldedalltGaRrdesksraklpiveidedfekslrvfPllnWteedvwqyilrenipynpLydqgfrsiGcvpctga 174
                  ++a+++l+ da+ltG Rr++  +r  l i+eide+    ++++Pl+nW+ ++v++yi+ +n+pyn+L d+g++s+G++++t++
   KKY21312.1 167 QRAYRELRVDAVLTGRRRSQGGKRGDLDIIEIDEA--GLIKINPLANWSFKQVQEYIKVNNVPYNELLDRGYKSVGDWHSTSP 247
                  ***********************************..79*****************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2193.81
//
Query:       KKY21313.1  [L=299]
Description: putative phosphoserine phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-22   80.4   0.0    3.3e-22   79.8   0.0    1.3  1  HAD              haloacid dehalogenase-like hydrolase
    2.2e-18   67.3   0.0    3.5e-18   66.7   0.0    1.3  1  Hydrolase        haloacid dehalogenase-like hydrolase
      4e-11   43.1   0.0    1.5e-09   38.0   0.0    2.7  3  Hydrolase_3      haloacid dehalogenase-like hydrolase
    5.8e-05   23.2   0.0     0.0022   18.1   0.0    2.8  1  HAD_2            Haloacid dehalogenase-like hydrolase
    0.00022   20.7   0.0     0.0013   18.2   0.0    1.9  1  Put_Phosphatase  Putative Phosphatase
    0.00073   19.1   0.0     0.0018   17.9   0.0    1.6  2  S6PP             Sucrose-6F-phosphate phosphohydrolase
  ------ inclusion threshold ------
      0.041   13.3   0.0        1.6    8.1   0.0    2.2  2  DUF4392          Domain of unknown function (DUF4392)


Domain annotation for each model (and alignments):
>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0   1.3e-25   3.3e-22       1     188 []      51     223 ..      51     223 .. 0.88

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 1.3e-25
         HAD   1 alfDfDgTLldgdslelllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpklldpgalellaahra 99 
                 a+fD+D TL++++ +++++  ++++      +++ + +  a+    ++ld ++  ++   ll+g ++ + + l+  +       +++pga el++  ++
  KKY21313.1  51 AIFDMDSTLIQQEVIDEIAS-FIGV-----EAEVSAITARAM---NGELDFSASLKARVGLLKGVPATVFETLKSRI-------TITPGAIELCRVLKR 133
                 79**********98888888.5555.....444444444444...4566666778999********88888888888.......799************ PP

         HAD 100 aGdrvvvvSgglrplvepllaelgadevlatelevdd...rltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpllr 188
                  G++++v Sgg++pl+  l+  lg d+  a++l vd     ltgel ++ ++++ e+k + l++    +++gi+l  + a+GD+ +D+p+l+
  KKY21313.1 134 LGFTLAVASGGFQPLADWLASILGLDYAFANHLLVDPttnTLTGELDPSKPIIHAEQKRSLLQS--LTQKHGIPLTQTLAVGDGANDIPMLK 223
                 ****************************************************************..88888888999*************97 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   1.4e-21   3.5e-18       5     210 .]      52     226 ..      49     226 .. 0.87

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 1.4e-21
                 EEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   5 vfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrtvall 103
                 +fD+d TL++ e     vi+++                     a + +++ +++ +++     +++ g+ ++ ++l               ++r   l+
  KKY21313.1  52 IFDMDSTLIQQE-----VIDEI---------------------ASFIGVEAEVSAITA-----RAMNGELDFSASL---------------KARVGLLK 104
                 8***********.....*****.....................***************.....*************...............66666666 PP

                 TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCES........STTT..SHHHHHHHHHHH.T... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx........xxxx..xxxxxxxxxxxx.x... RF
   Hydrolase 104 qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdiet........vakp..spegkvaaireL.q... 187
                    a    t++  +++ p+a e+++ Lk+ g+ +++++g+++  a+ +a+ lG d +f++++ +d +t         +kp  + e+k+ +++ L q   
  KKY21313.1 105 GVPATVFETLKSRITITPGAIELCRVLKRLGFTLAVASGGFQPLADWLASILGlDYAFANHLLVDPTTntltgeldPSKPiiHAEQKRSLLQSLtQkhg 203
                 444444555778899**************************************9999999999999999997766644448888888888888852455 PP

                 STGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 188 gkpeevamVGDgvnDaaalaaAg 210
                 ++  ++++VGDg+nD+++l+aAg
  KKY21313.1 204 IPLTQTLAVGDGANDIPMLKAAG 226
                 889*******************8 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.11   2.9e+02       2      19 ..      52      63 ..      51     102 .. 0.69
   2 ?   -0.4   0.0      0.29   7.6e+02      10      39 ..     114     143 ..     113     162 .. 0.89
   3 !   38.0   0.0   5.7e-13   1.5e-09     187     229 ..     190     232 ..     185     242 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.11
                 EEEIIIIIS-TTS---HH CS
  Hydrolase_3  2 alDlDGTLlnsdkkisek 19
                 ++D+D TL+++      +
   KKY21313.1 52 IFDMDSTLIQQ------E 63
                 79******654......3 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.29
                  S-TTS---HHHHHHHHHHHHTTSEEEEE-S CS
  Hydrolase_3  10 lnsdkkisektkeaikklkekgikvviATG 39 
                  l+s  +i++ ++e ++ lk  g+++++A+G
   KKY21313.1 114 LKSRITITPGAIELCRVLKRLGFTLAVASG 143
                  5677789999*******************9 PP

  == domain 3  score: 38.0 bits;  conditional E-value: 5.7e-13
                  SHHHHHHHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEET CS
  Hydrolase_3 187 sKgtalkklakelnisleeviafGDgeNDieMLeaaglgvAmg 229
                  +K + l+ l ++ +i+l +++a+GDg NDi+ML+aaglgvA +
   KKY21313.1 190 QKRSLLQSLTQKHGIPLTQTLAVGDGANDIPMLKAAGLGVAWK 232
                  79999***********************************965 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   8.7e-07    0.0022       2     177 ..      52     231 ..      51     232 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 8.7e-07
       HAD_2   2 iFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeeekieellrkyneekkkkevkpydgvkelLeeLkeagyklgi 100
                 iFD+D Tl+ +e +i +++  +  e ++s ++   ++  + +s       l+ +    ++++ +  ++ e +k   +++ +g++el   Lk+ g++l++
  KKY21313.1  52 IFDMDSTLIQQE-VIDEIASFIGVEAEVSAITARAMNGELDFSA-----SLKARV---GLLKGVPATVFETLKS-RITITPGAIELCRVLKRLGFTLAV 140
                 677777776543.3333333333333333333333333333333.....233322...2666666666667777.9*********************** PP

       HAD_2 101 vTsksreaveekleqlgiesyFdvivtsedvekk........KP......dpeviekaleklklkkeeviyvGDsptDieaakkagikvia 177
                 ++ + +  ++   + lg++  F   +  + +++         KP      +  +++ + +k ++   +++ vGD  +Di   k+ag+ v++
  KKY21313.1 141 ASGGFQPLADWLASILGLDYAFANHLLVDPTTNTltgeldpsKPiihaeqKRSLLQSLTQKHGIPLTQTLAVGDGANDIPMLKAAGLGVAW 231
                 **********************99999888887666777777996633222234555555669999********************99987 PP

>> Put_Phosphatase  Putative Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   4.9e-07    0.0013       3     185 ..      51     221 ..      49     235 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 4.9e-07
  Put_Phosphatase   3 vvfDFDktiidedsdnwvvdelpatelfeelretlrkglwnelmdrvlkelhe.qgvseadikkvlrsiplspglvelikslakkkleldliii 95 
                      ++fD D t+i+++  + + + ++ +++ + + +   +g   ++ + + ++++  +gv  + +++   +i+++pg +el + l  k+l++ l + 
       KKY21313.1  51 AIFDMDSTLIQQEVIDEIASFIGVEAEVSAITARAMNGE-LDFSASLKARVGLlKGVPATVFETLKSRITITPGAIELCRVL--KRLGFTLAVA 141
                      68****************************999888654.5666666666665156777777777778**************..679******* PP

  Put_Phosphatase  96 SDaNsffieeileaagledlFse.iftNPaavdasGeltvlpyhehsCklcpsNlCKgkvleelvaeqaregveyerliYvGDganDlCpv 185
                      S   +   +++ + +gl   F++ ++  P++   +Gel  +    h          K+++l+ l+++   +g+  ++ + vGDganD+ p+
       KKY21313.1 142 SGGFQPLADWLASILGLDYAFANhLLVDPTTNTLTGELDPSKPIIHA-------EQKRSLLQSLTQK---HGIPLTQTLAVGDGANDI-PM 221
                      *********************98899***********9755443343.......3499999999999...699999999999999998.44 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.4   3.6e+03       6      20 ..      52      64 ..      48      84 .. 0.70
   2 !   17.9   0.0   6.9e-07    0.0018     165     206 ..     190     231 ..     185     244 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.4
                EE-TBTTTB.S-HHH CS
        S6PP  6 vsdLDntlvdgdnea 20
                + d+D+tl+  ++e 
  KKY21313.1 52 IFDMDSTLI--QQEV 64
                679999999..3333 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 6.9e-07
                 SHHHHHHHHHHHHT--GGGEEEEE-SGGGHHHHTSSSEEEE- CS
        S6PP 165 skgeAlryLakkleleleqilvcGdsgnDeellignvlgVvV 206
                 +k + l+ L +k++++l q+l +Gd  nD+ +l++  lgV  
  KKY21313.1 190 QKRSLLQSLTQKHGIPLTQTLAVGDGANDIPMLKAAGLGVAW 231
                 57777999***************************9999975 PP

>> DUF4392  Domain of unknown function (DUF4392)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.024        61      59      74 ..     122     137 ..     121     152 .. 0.89
   2 ?    8.1   0.0   0.00061       1.6     172     197 ..     195     223 ..     182     230 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.024
     DUF4392  59 lGAialaraLqalgkk 74 
                 +GAi l+r+L++lg+ 
  KKY21313.1 122 PGAIELCRVLKRLGFT 137
                 8*************86 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00061
     DUF4392 172 lfeaakeig...iptigiGDgGNElGmGk 197
                 l ++ +++g   ++t+++GDg N++ m k
  KKY21313.1 195 LQSLTQKHGiplTQTLAVGDGANDIPMLK 223
                 44555666655999***********9966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2155.06
//
Query:       KKY21314.1  [L=264]
Description: hypothetical protein UCRPC4_g03750 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1827.70
//
Query:       KKY21315.1  [L=671]
Description: putative epidermal growth factor-like type 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.034   14.4   2.2      0.075   13.3   2.2    1.6  1  Myticin-prepro  Myticin pre-proprotein from the mussel
       0.13   12.6  11.1       0.24   11.8  11.1    1.4  1  EGF_2           EGF-like domain


Domain annotation for each model (and alignments):
>> Myticin-prepro  Myticin pre-proprotein from the mussel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.2   8.3e-06     0.075       3      57 ..     355     411 ..     353     435 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.3e-06
  Myticin-prepro   3 aavlLavvvavlvavqeaeavsCasryCkkfCrsa.rCty.yvsvllhkgklCkClr 57 
                     aa+++ +v++vl  +++a+  s a+   ++ C s   C+   vsv+l+ ++ C C++
      KKY21315.1 355 AAIIIPIVLIVLPRTRNANNASAAADKNSSGCASTnPCSNeGVSVTLNGQCGCVCVN 411
                     89****************99988888888888765169762689***********97 PP

>> EGF_2  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8  11.1   2.6e-05      0.24       1      32 []     386     418 ..     386     418 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.6e-05
       EGF_2   1 CsasdeiCgghGtCvnqcGq..CdCdsgyqGktC 32 
                 C +  + C++ G+ v+++Gq  C+C +g++G tC
  KKY21315.1 386 CAS-TNPCSNEGVSVTLNGQcgCVCVNGFTGSTC 418
                 655.589************988999********* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1180  (0.0658152); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 4172.64
//
Query:       KKY21316.1  [L=289]
Description: hypothetical protein UCRPC4_g03752 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   14.0   0.6       0.11   12.5   0.6    1.8  1  DUF1192    Protein of unknown function (DUF1192)
       0.13   10.2   3.8       0.76    7.7   0.1    2.1  2  Dicty_REP  Dictyostelium (Slime Mold) REP protein


Domain annotation for each model (and alignments):
>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.6   1.3e-05      0.11      26      48 ..     242     264 ..     238     267 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.3e-05
     DUF1192  26 eerIalLeaEIaRleaaiakkka 48 
                 +er + LeaEI+R+++a+++ ++
  KKY21316.1 242 TERMKWLEAEIERARRALESSEQ 264
                 68999*************98765 PP

>> Dicty_REP  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   1.2     0.002        18     254     327 ..      84     165 ..      46     197 .. 0.71
   2 ?    7.7   0.1   8.5e-05      0.76     514     565 ..     232     282 ..     224     287 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.002
   Dicty_REP 254 nkttttttttttttsqartrkrkaidddklsenqakekkknskksdddpqsdfskkssrksgslkdvrvdnis..........d 327
                 n+tttt          +r +  ++++ + + +++++ ++++ ++ ++d++s+ + kss ++g+ + + ++ i+          +
  KKY21316.1  84 NRTTTTGRRYGEECYDERMKAGRRVEVHLVMKDKKNLPMQECNEETEDSKSKLRTKSSTSDGNFD-I-NNSITkfsiaslypqK 165
                 55555555556666677778888899999999999999999999999999999999999988864.2.2223334355555551 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 8.5e-05
   Dicty_REP 514 ksiskeLlglsqrlLnlEadvrkLkdlllkklkkkvkvdeselsandeeerk 565
                  s++ eLl++ +r+  lEa++++ + +l ++ ++  ++++ ++ ++d +e+k
  KKY21316.1 232 SSVIPELLNVTERMKWLEAEIERARRALESS-EQVADDEDDNILSSDIGETK 282
                 68999**********************9999.78888888899999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       805  (0.0448993); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 1863.80
//
Query:       KKY21317.1  [L=113]
Description: putative iron-sulfur cluster biosynthesis protein isd11 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-21   74.5   4.0    5.1e-21   74.5   4.0    1.8  2  Complex1_LYR    Complex 1 protein (LYR family)
    2.4e-05   25.0   1.2    2.8e-05   24.8   1.2    1.1  1  Complex1_LYR_2  Complex1_LYR-like
     0.0094   16.5   0.2      0.012   16.2   0.2    1.3  1  Complex1_LYR_1  Complex1_LYR-like
  ------ inclusion threshold ------
      0.046   13.7   0.1      0.072   13.1   0.1    1.2  1  VitD-bind_III   Vitamin D binding protein, domain III
       0.16   12.1   2.4        0.9    9.6   0.5    2.2  2  Ribonuclease_P  Ribonuclease P


Domain annotation for each model (and alignments):
>> Complex1_LYR  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   4.0   1.4e-24   5.1e-21       3      58 ..      15      70 ..      13      71 .. 0.96
   2 ?   -0.6   0.0      0.39   1.4e+03      42      55 ..      80      93 ..      73      96 .. 0.81

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 1.4e-24
  Complex1_LYR  3 vLsLYRalLRearkfpdyntreyfrrriRdeFrknkhvtDpekieellkkgreeLe 58
                    sLYR+lLR++++f +yn+rey++rr+Rd Fr++k+++Dp++i+el++kg ++L+
    KKY21317.1 15 TRSLYRSLLRQGSQFANYNFREYAKRRTRDAFREYKDESDPRRIQELVQKGLKDLQ 70
                  679***************************************************98 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.39
  Complex1_LYR 42 Dpekieellkkgre 55
                   ++++ +l+ +g++
    KKY21317.1 80 QFYQLDKLVVEGQK 93
                  57899999999998 PP

>> Complex1_LYR_2  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   1.2   7.7e-09   2.8e-05       2      61 ..      16      76 ..      15     101 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 7.7e-09
  Complex1_LYR_2  2 lsLYrrllrelrel.ppelrslgdayvraefrrhkhlknpeeialflknqreYaelleryn 61
                    +sLYr+llr+  +    + r++ +++ r++fr+ k+ ++p  i++++++    ++ ++r+ 
      KKY21317.1 16 RSLYRSLLRQGSQFaNYNFREYAKRRTRDAFREYKDESDPRRIQELVQKGLKDLQVMKRQT 76
                    8**********665699****************88888**********9988888899984 PP

>> Complex1_LYR_1  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   3.3e-06     0.012       4      41 ..      16      53 ..      13      85 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.3e-06
  Complex1_LYR_1  4 lrlyrallkaarrfPlrsrreivaeevraafrhplnds 41
                     +lyr ll+ + +f   + re      r afr   ++s
      KKY21317.1 16 RSLYRSLLRQGSQFANYNFREYAKRRTRDAFREYKDES 53
                    68******************************655444 PP

>> VitD-bind_III  Vitamin D binding protein, domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1     2e-05     0.072       5      40 ..      28      64 ..      26      67 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2e-05
  VitD-bind_III  5 dYseltFley.KkrlaeklkkklPeaspeelkelvek 40
                   ++ +++F ey K+r ++++++   e  p+ ++elv+k
     KKY21317.1 28 QFANYNFREYaKRRTRDAFREYKDESDPRRIQELVQK 64
                   7999******667899*******************97 PP

>> Ribonuclease_P  Ribonuclease P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.018        65       4      29 ..      10      35 ..       8      38 .. 0.86
   2 ?    9.6   0.5   0.00025       0.9      58      86 ..      35      62 ..      34      88 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.018
  Ribonuclease_P  4 kerLkkraeFqavfregkrvaskdlv 29
                    ++  ++r+ +++++r+g ++a++++ 
      KKY21317.1 10 QHAFQTRSLYRSLLRQGSQFANYNFR 35
                    5677899****************996 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00025
  Ribonuclease_P 58 RNrikRllReafrlnkdelpagldlvvia 86
                    R + kR+ R afr+ kde ++   +  ++
      KKY21317.1 35 REYAKRRTRDAFREYKDESDP-RRIQELV 62
                    8899*************9984.4444344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 763.47
//
Query:       KKY21318.1  [L=436]
Description: putative mfs maltose permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 2691.32
//
Query:       KKY21319.1  [L=585]
Description: putative rna-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-15   54.4   0.0    8.2e-07   28.8   0.0    2.7  2  RRM_1          RNA recognition motif. (a.k.a. RRM, RBD, or RN
    2.8e-08   33.5   1.6    7.7e-08   32.1   1.6    1.8  1  G-patch        G-patch domain
    4.3e-08   32.3   2.3      8e-08   31.5   2.3    1.4  1  zf-RanBP       Zn-finger in Ran binding protein and others
  ------ inclusion threshold ------
      0.014   15.0   0.7      0.014   15.0   0.7    2.2  2  RED_N          RED-like protein N-terminal region
      0.072   12.9   0.7        2.5    8.0   0.2    2.7  2  Rad50_zn_hook  Rad50 zinc hook motif
       0.11   12.6   4.5       0.11   12.6   1.0    2.5  2  G-patch_2      G-patch domain


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.8e-10   8.2e-07       4      61 ..       3      64 ..       1      72 [. 0.85
   2 !   22.6   0.0   2.2e-08   6.6e-05      23      62 ..     211     251 ..     208     255 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2.8e-10
                ESETTTSSHHHHHHHHHT...TSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTT CS
       RRM_1  4 gnLppdvteeeLkelFsk...fGpiksiklvrd.etgkskgfafVeFeskedAekAlealng 61
                 +L+p++te+ + + + +   ++  ++++++rd  t+ s+gf+f +F s  dA++ +e+ +g
  KKY21319.1  3 DGLHPELTEDGIAQELAQhyqVENLEDVRIIRDrTTKESRGFGFLRFSSLQDARALIERNQG 64
                6899******99999988433566699****************************9998777 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 2.2e-08
                 SCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTE CS
       RRM_1  23 Gpiksiklvrd.etgkskgfafVeFeskedAekAlealngk 62 
                 G+ +++ lvrd +t+ s +f+f eF++ edA++Al ++n  
  KKY21319.1 211 GSLRRVLLVRDrKTDDSWRFGFAEFANVEDAQAALIRYNSF 251
                 788999*****************************999984 PP

>> G-patch  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   1.6   2.6e-11   7.7e-08       1      44 [.     502     545 ..     502     546 .. 0.96

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 2.6e-11
     G-patch   1 tsniGvkmLqkmGWkpGqGLGkkeqGiaePieakikkdraGlGa 44 
                 t+++G+ +L kmG+  + GLG +++G+++Pi+ ++   + GlGa
  KKY21319.1 502 TQSKGASLLNKMGYTGTGGLGASGSGMTAPISQDVYVAGVGLGA 545
                 689***************************************98 PP

>> zf-RanBP  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   2.3   2.7e-11     8e-08       2      26 ..     100     124 ..     100     128 .. 0.93

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 2.7e-11
                 SSSEE-SSS--EEESSSSB-TTT-- CS
    zf-RanBP   2 egdWdCskClvqNfawstkCvaCqa 26 
                 eg W+C  C+v Nfa++t+C++C++
  KKY21319.1 100 EGEWTCRICNVLNFATRTRCFRCSG 124
                 79*********************86 PP

>> RED_N  RED-like protein N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   1.0      0.23   6.8e+02     108     139 ..     322     348 ..     309     370 .. 0.45
   2 ?   15.0   0.7   4.6e-06     0.014      11      57 ..     446     492 ..     436     508 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.23
                 XXXXXXXXXXXXXXXXXXXHHHHHCS--.... CS
       RED_N 108 eeeeeeeekelekkaeeekekekekeeeeeik 139
                 e+ +e +     k++e+ek+k++++e +++  
  KKY21319.1 322 EDTDEVA-----KSKEAEKSKKRKAEAASSNA 348
                 2222222.....22222222222222222222 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 4.6e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX CS
       RED_N  11 kqeeekeeelaekYrDRAkERRegknadyekedalsetaayravapd 57 
                 ++ e++  +++  YrDRA+ERR+    ++ ++d++++ +  + ++ d
  KKY21319.1 446 RKLEKHGVSQTTEYRDRARERRKAFGVQKRQADPSKTNTPAKPITLD 492
                 4556666778899**********998777788887777666655555 PP

>> Rad50_zn_hook  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.047   1.4e+02      28      44 ..       8      25 ..       6      28 .. 0.91
   2 ?    8.0   0.2   0.00082       2.5      20      31 ..     405     417 ..     399     437 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.047
                   EE-HHH.HHHHHHHHHHH CS
  Rad50_zn_hook 28 eldeeh.rseLikelqsk 44
                   el+e+  ++eL++++q +
     KKY21319.1  8 ELTEDGiAQELAQHYQVE 25
                   799************987 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00082
                    E.E-TTT--EE-H CS
  Rad50_zn_hook  20 g.cCPlCgRelde 31 
                      cC+lC R + +
     KKY21319.1 405 RmCCYLCYRQFKT 417
                    45*******9976 PP

>> G-patch_2  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.34     1e+03      46      60 ..     363     377 ..     325     378 .. 0.73
   2 ?   12.6   1.0   3.7e-05      0.11      18      58 ..     506     546 ..     502     548 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.34
   G-patch_2  46 pkrRpgrlGLGakpa 60 
                  +r++++ GLG kpa
  KKY21319.1 363 SNRHAELHGLGKKPA 377
                 577888999999986 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.7e-05
   G-patch_2  18 GaAlLrGMGWkegqgigknkkgrvkpeepkrRpgrlGLGak 58 
                 Ga lL  MG++   g g +++g ++p+ ++   ++ GLGa+
  KKY21319.1 506 GASLLNKMGYTGTGGLGASGSGMTAPISQDVYVAGVGLGAQ 546
                 899************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1154  (0.064365); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 3529.26
//
Query:       KKY21320.1  [L=445]
Description: hypothetical protein UCRPC4_g03756 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        0.1   12.2   3.2       0.18   11.4   3.2    1.4  1  VASP_tetra      VASP tetramerisation domain
        1.1    9.0   8.4        1.7    8.4   8.4    1.2  1  DUF724          Protein of unknown function (DUF724)
        2.8    6.3  11.0        3.5    6.0  11.0    1.1  1  Borrelia_P83    Borrelia P83/100 protein


Domain annotation for each model (and alignments):
>> VASP_tetra  VASP tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.2     3e-05      0.18       5      25 ..      78      99 ..      77     110 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3e-05
  VASP_tetra  5 ErlK.qEILeEvrkELqKvKeE 25
                Er+K +E+++E+r+ELq  KeE
  KKY21320.1 78 ERIKaEELVKEMRRELQISKEE 99
                7888347**********88888 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   8.4   0.00029       1.7     100     176 ..      40     123 ..      35     129 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00029
      DUF724 100 lkdeqtklleerkklekkieeeesekrkleeeid.......elekkilelerqlallkekkeaadkeiarlkseaekleeeled 176
                  ++eq++++e++ +l+++++ee++++++++++++       + e+ ++e++r+l+  ke+  +a++e+ r ++e+++  ++l++
  KKY21320.1  40 TRQEQERAAEAQAELQRQLQEERQQRTEASNSVSgaraeriKAEELVKEMRRELQISKEEARRAWEELGRREQEERDRTTSLKN 123
                 577889999999999999999999999998888888888889999*****************************9999888877 PP

>> Borrelia_P83  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  11.0   0.00058       3.5     227     303 ..      38     113 ..       1     125 [. 0.71

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.00058
  Borrelia_P83 227 kdadkakkkadtaednadkqrkevreklqeaknlpepadvsskkedkkvaeekkreiekaqkeikkkdeeakkakda 303
                    +  + +++a  a++++++q +e r+++ ea n+   a+ +  k ++ v+ e +re+  +++e++++ ee+ + +++
    KKY21320.1  38 FETRQEQERAAEAQAELQRQLQEERQQRTEASNSVSGARAERIKAEELVK-EMRRELQISKEEARRAWEELGRREQE 113
                   34455566666677777777777777778899999999999999999888.88999999999999999998765443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1864  (0.103966); expected 358.6 (0.02)
Passed bias filter:                      658  (0.0367003); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 3061.91
//
Query:       KKY21321.1  [L=656]
Description: putative mfs multidrug [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-38  131.5  26.9    6.7e-36  123.9  23.5    2.1  2  MFS_1     Major Facilitator Superfamily
    1.5e-07   30.7  13.7    2.4e-07   30.0  12.4    1.9  2  Sugar_tr  Sugar (and other) transporter
    0.00075   18.0   2.2     0.0011   17.4   2.2    1.2  1  TRI12     Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.9  23.5   1.1e-39   6.7e-36       3     271 ..     182     469 ..     180     478 .. 0.84
   2 !    8.9   0.1    0.0001      0.62     272     332 ..     545     609 ..     518     624 .. 0.86

  Alignments for each domain:
  == domain 1  score: 123.9 bits;  conditional E-value: 1.1e-39
       MFS_1   3 laaflsalarsilgpalplalaedlg.ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw.lllvlrvlqGlg 98 
                   +fl+ l++s+ +p l   +a+++   s  e ++ll+++ l++a++ +++G+ls+ +Gr  +l ++ ++f+ + ++++ f +++   ++++r+++G+g
  KKY21321.1 182 SFTFLAPLTSSMPAPGLE-QIARQFRvTSDIETQMLLSIFVLAFAIGPVIFGPLSELYGRVVILQAANVIFLGC-TIGCgF-AQSElQMMIFRFFAGFG 277
                 56899************9.7999999455666******************************************.666659.666669*********** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee......... 188
                 ++a +++g+ ++ d+f ++erg+a++++++g  lG+ +gp++g++++++  Wr++f+++ ++s++++ + ++++ e++ +   +++++ +         
  KKY21321.1 278 GSAPLAIGGGVLGDLFLPQERGKAMAIYGMGPLLGPSIGPIVGSFVSAYSTWRWMFWAASGASAVVLAVSFIFMKESYAPVLLERKATALrestgidfy 376
                 ******************************************************************777666666666666666666666999999999 PP

       MFS_1 189 ............kgtgpaplvp....awkallkdpvlw.illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr 270
                             k+       +    a+k+l+++p ++ +++++++  +  ++++l+++p + ++v++ s + +agl +  l+l+++i+a+++g+  d+
  KKY21321.1 377 qtetydpnktiiKSIS-----StlirALKMLFTQPIVLvMAWYMAYAYG-TMYLVLATFPNLWRDVYHES-ATMAGLNYLSLGLGFFIGAPITGKGTDK 468
                 9997777444433333.....356667********88767777777777.5555666666656*******.8****9999999999999******9999 PP

       MFS_1 271 l 271
                 +
  KKY21321.1 469 I 469
                 5 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0001
       MFS_1 272 grrrrlllallllllaalglallavtssavllll....vlvliGfglgfvfpsllalasdlappe 332
                 +++ rl l++++ ll  +gl+l +++ ++ l+++    + +l+ +g   +f s++a++ d + ++
  KKY21321.1 545 KPEYRLPLIIPFSLLPPIGLFLYGWSAEYRLHWIfpnvGAFLFALGTVAAFQSVTAYLIDAYTRR 609
                 5688999*******************999999999998888889988888999999988887544 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0  12.4     4e-11   2.4e-07      43     196 ..     208     356 ..     176     427 .. 0.78
   2 ?   -1.2   0.1      0.12   7.1e+02      10      73 ..     410     469 ..     401     473 .. 0.68

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 4e-11
                 H...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHH CS
    Sugar_tr  43 essvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvs 141
                 +s++ + +++sif++  +iG +++g+l++ +GR  +l +a+v+f+ +++ +++a+   s  ++++ R+++G+g  +  ++    ++ +  ++ Rg+ + 
  KKY21321.1 208 TSDIETQMLLSIFVLAFAIGPVIFGPLSELYGRVVILQAANVIFLGCTIGCGFAQ---SELQMMIFRFFAGFGGSAPLAIGGGVLGDLFLPQERGKAMA 303
                 3889999************************************************...77899999********************************* PP

                 HHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCH.HHHHHHHHHGGGS---HH CS
    Sugar_tr 142 lyqlaitfGilvaaifglglnktsnadgwrillglql.vpallllilllflPESPr 196
                 +y ++  +G  ++ i+g +++ +s    wr++++ ++ ++a++l++ ++f+ ES  
  KKY21321.1 304 IYGMGPLLGPSIGPIVGSFVSAYST---WRWMFWAASgASAVVLAVSFIFMKESYA 356
                 *************************...*****9765277888888899*****22 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.12
                 HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHT CS
    Sugar_tr  10 llfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrf 73 
                 ++ +Y  + +g+++ +l+++ n   +++++s    ++  gl   ++ +G +iG+ ++g+ +d++
  KKY21321.1 410 VMAWYMAYAYGTMYLVLATFPNLWRDVYHES----ATMAGLNYLSLGLGFFIGAPITGKGTDKI 469
                 5667777777777777776655555555543....34678888888888888888888888875 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   2.2   1.9e-07    0.0011      78     222 ..     212     355 ..     170     377 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.9e-07
       TRI12  78 ensslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpagasplfvg.....elmsnktkflglliv 171
                 e + l+ +++ +  a+  +++g l++ +gr  ++ ++ ++  +g+ +gc  ++       m ++   ag  g++pl +g     +l+  + +   + i 
  KKY21321.1 212 ETQMLL-SIFVLAFAIGPVIFGPLSELYGRVVILQAANVIF-LGCTIGCGFAQS---ELQMMIFRFFAGFGGSAPLAIGggvlgDLFLPQERGKAMAIY 305
                 444444.46788999999************98888888875.688999986554...4568889999*********88522222676667777777777 PP

       TRI12 172 sipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsf 222
                  +  +   +++p +g  ++   +wrw+f+     sa+ + +  ++    s+
  KKY21321.1 306 GMGPLLGPSIGPIVGSFVSAYSTWRWMFWAASGASAVVLAVSFIFMKE-SY 355
                 776666667*******************99888887766555555443.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       682  (0.0380389); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4663.31
//
Query:       KKY21322.1  [L=189]
Description: putative protein kinase-like domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-11   43.5   0.0      4e-08   33.5   0.0    2.1  2  APH             Phosphotransferase enzyme family
    3.4e-07   30.1   0.0    5.1e-07   29.5   0.0    1.3  1  Choline_kinase  Choline/ethanolamine kinase
  ------ inclusion threshold ------
        0.2   11.2   0.1       0.99    9.0   0.1    1.9  2  RIO1            RIO1 family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00033         2      31      99 ..      10      78 ..       6      82 .. 0.74
   2 !   33.5   0.0   6.7e-12     4e-08     163     204 ..     105     146 ..      81     168 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00033
                TS-HHHHHHHHHHHHHHH.HTT-B--B-CTTBS-EEETTEEEEE.EE----EE-SS.HHHHHHHHHHHHHHH CS
         APH 31 araaeeirrevallrlLa.kagvpvPevlagdtddeeigllfal.ieyvpgrsllr.klsaaqlpellealg 99
                ++++e++ + ++ l++++ k+ +pvP+++++    +++g +f+l +e+v g +l+  +++ +++ +++++++
  KKY21322.1 10 PWSDERLKNDYEALKYISeKTTIPVPKIHHF---TDVSGGVFELkMERVYGVPLSSiTNNREEAVAVVDEFI 78
                489999************88888*******6...34444444443788888777777667777777776665 PP

  == domain 2  score: 33.5 bits;  conditional E-value: 6.7e-12
                 SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHH CS
         APH 163 elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyD 204
                   + +++H+Dl  +N+lvd d  rv G+iD+e++g   p ++
  KKY21322.1 105 VAEFSFCHNDLAQQNILVDIDSCRVEGIIDWEFSGFYTPEFE 146
                 45889**************999*************9999887 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   8.5e-11   5.1e-07     142     181 ..     105     145 ..      52     147 .. 0.76

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 8.5e-11
                     GG-EEEE-S--SGGGEEE.-CTTEEE.E--GTT-EEEEHHH CS
  Choline_kinase 142 espvvfcHnDlqegNillnkeekklv.lIDFEYagynyrgf 181
                       +  fcHnDl ++Nil++ +  ++  +ID+E++g+ +  f
      KKY21322.1 105 VAEFSFCHNDLAQQNILVDIDSCRVEgIIDWEFSGFYTPEF 145
                     34489*************9999999659******9877665 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.035   2.1e+02      56     116 ..      17      79 ..      10      87 .. 0.65
   2 ?    9.0   0.1   0.00016      0.99      82     149 ..      72     135 ..      51     138 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.035
                 HHHHHHHHHHHHTT.--S--EEEEET...TE..EEEE--EETTEEGGBHHHCG-HHHHHHHHHHHHH CS
        RIO1  56 ekEfrnLkrleeag.vpvPkpielkr...hv..lvmefigedgvaapklkdveeeeeaeelyeevle 116
                 ++ +++Lk ++e+  +pvPk  ++ +    v  l me +   gv++  + + +  eea  +++e ++
  KKY21322.1  17 KNDYEALKYISEKTtIPVPKIHHFTDvsgGVfeLKMERVY--GVPLSSITNNR--EEAVAVVDEFIK 79 
                 5678889999877669999987665411133335566666..77777776666..566666666655 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00016
                 EEEEE--EETTEEGGBHHHCG-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETTEEE...E--G CS
        RIO1  82 vlvmefigedgvaapklkdveeeeeaeelyeevleemrklykeaglvHaDLSeyNvlvdedkvv...iIDv 149
                 ++v efi+     +p+l  +  eee ++  +  +++    ++e    H DL + N+lvd d +    iID+
  KKY21322.1  72 AVVDEFIK--TEVLPTLVALV-EEEGSKTWKPRVSN----VAEFSFCHNDLAQQNILVDIDSCRvegIIDW 135
                 67888888..66777777777.45555555555554....557889*************997742336777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1302.68
//
Query:       KKY21323.1  [L=333]
Description: putative hydroxyquinol [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-40  136.4   0.0    9.6e-40  135.9   0.0    1.2  1  Dioxygenase_C  Dioxygenase
    7.5e-31  105.8   0.0    1.3e-30  105.1   0.0    1.4  1  Dioxygenase_N  Catechol dioxygenase N terminus


Domain annotation for each model (and alignments):
>> Dioxygenase_C  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9   0.0   1.1e-43   9.6e-40       2     180 ..     114     296 ..     113     298 .. 0.93

  Alignments for each domain:
  == domain 1  score: 135.9 bits;  conditional E-value: 1.1e-43
                    --S--EET--EEESEEE---S--TT--EEEEEEEEE-TTSSB-TT-EEEEE---TTS--TTS-TTS-SSTTTTEEEEE--TTSEEEEEEE----EE CS
  Dioxygenase_C   2 egPlyveeapededlarledkgeeegerlvlsGrvldeaGkplagalvelWhanaeGrYshkkeeheapelnlrgriltdeeGryrirtikPapYp 97 
                     gP+++++ap ++   +l+d  ++  +rl++  ++ d++G+p+ + + ++W+ +++G+Y+ ++++  +++++ r  + + e+G++ +++i P pYp
     KKY21323.1 114 LGPFHTHDAPDASLGYTLHD--DPDATRLFVLCNIKDTNGNPVSNVTCDVWEGDSHGFYDVQDPN--RSKPDGRAVLHSAEDGTFFFNAIVPVPYP 205
                    699****9999999999999..9******************************************..99999999999****************** PP

                    --TTSHHHHHHHHTT---EE-SEEEEEEE-TTB--EEEEEEETT-TTTTS-TT----TTTEE--EEE-SH........S-.EEEEE--EE- CS
  Dioxygenase_C  98 ipndGptgklldalgrhawRPaHiHfsvsapghrklvTqlyfegdkyladdivsaakeeLiaeleesede........eekalelefdlvL 180
                    ip dGp+g++l+ l+r+++RP H+Hf++  pg+  l+T ly +gd+y ++d v+++ke+Li++l++ +de           ++ l++d+vL
     KKY21323.1 206 IPMDGPVGQMLQILNRNPNRPGHVHFMLRKPGYDDLITALYPRGDPYETSDPVFGVKESLIVDLSTVTDEgiarkynvALGSKLLTYDFVL 296
                    *********************************************************************9777777663344556777777 PP

>> Dioxygenase_N  Catechol dioxygenase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.1   0.0   1.4e-34   1.3e-30       1      73 [.      35     107 ..      35     109 .. 0.97

  Alignments for each domain:
  == domain 1  score: 105.1 bits;  conditional E-value: 1.4e-34
                    -HHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH.....TT-HHHHHHHTTHHHHHHHHHHHHHHH CS
  Dioxygenase_N   1 dpRlkeiverlvrhlhdfirevdlteeEwwaavdfLtrvGqisddkrqEfiLlsdvLGlehlvdaindakeag 73 
                    +pR+++++erl++hlhdf+rev+l+++Ew+ ++dfL+r+Gqisdd r+EfiLlsd+LGl++lvd+i+++k+ +
     KKY21323.1  35 NPRVRYVMERLITHLHDFAREVRLSTDEWRIGLDFLKRTGQISDDLRHEFILLSDTLGLSMLVDSIDHPKSGK 107
                    89******************************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2229.73
//
Query:       KKY21324.1  [L=507]
Description: putative nitrogen regulatory protein otam [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      7e-20   71.2   0.2    1.6e-19   70.0   0.0    1.6  2  Fungal_trans  Fungal specific transcription factor domain
  ------ inclusion threshold ------
       0.32   11.0   3.6        3.4    7.9   0.2    3.2  3  LSPR          Coagulation Factor V LSPD Repeat


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       0.2   1.8e+03      60      94 ..      50      95 ..      33      99 .. 0.54
   2 !   70.0   0.0   1.8e-23   1.6e-19       1     266 [.     107     353 ..     107     354 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.2
  Fungal_trans 60 ssltsesqefiafplraeili.............hedfsspssslwil 94
                  +  +++  +  ++p+++++ +             + ++++ s+ l+++
    KKY21324.1 50 KFYRNKL-DSSHGPVSFRMASkdthfaqlphpdsDSQYQDLSD-LESI 95
                  3444443.77777777777777766666664444333444444.4444 PP

  == domain 2  score: 70.0 bits;  conditional E-value: 1.8e-23
  Fungal_trans   1 ldrffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltses.qefiafplraeilihedfsspssslwilqs 96 
                   ld++f +  p +pil+k+ fl +     s+     sp ll+a++  + + ++     ++ ++ ++       + +++++l+    s ++++l ++q+
    KKY21324.1 107 LDLYFRVADPAYPILNKEAFLQSC----STRRWVVSPSLLAAMYLQAISWWSFSPDLNHLQQPDVGhL----ENIAYRTLL---GSMQRPQLSTVQA 192
                   799*********************....9999999999999999999999999999998888875433....345999999...9***********6 PP

  Fungal_trans  97 LlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlp......LPc 187
                    lll    + +s+r+  + +    v + ++lgLh + s ++       +e+e+  r+Rl+wa F+ D++ a+ +Grp  l ds+  +       +P 
    KKY21324.1 193 GLLL----LQRSNREPPWPLTAQLVAIGQELGLHVDCSEWN------IPEWEKGLRKRLAWALFVQDVWSASTMGRPRRLTDSNWGVKsigeadFP- 278
                   6666....56899999************************9......*******************************779999999954333333. PP

  Fungal_trans 188 ddddlwesddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlq.....seklswveeleraldnWr 266
                        +   d+++ ++      + +++r+ ++f+++L+++l++++ +l+s + +++  +++     +  ls  + ++ +l  W+
    KKY21324.1 279 -----DGDIDENGDDQAV----DVSNGRNVFLFMISLSQMLAEVLETLYSQSAESKVGQSSrtaatQAILSIAKPIQLRLRSWH 353
                   .....3333333333333....246789**********************9998887777777788888888888888888887 PP

>> LSPR  Coagulation Factor V LSPD Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.2   0.00038       3.4       1       8 [.     154     161 ..     154     161 .. 0.93
   2 ?   -3.1   0.0       1.6   1.4e+04       4       8 ..     165     169 ..     165     169 .. 0.90
   3 ?    2.5   0.2     0.023   2.1e+02       1       7 [.     394     400 ..     394     401 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00038
        LSPR   1 tLSPDLsQ 8  
                 ++SPDL++
  KKY21324.1 154 SFSPDLNH 161
                 79*****8 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.6
        LSPR   4 PDLsQ 8  
                 PD ++
  KKY21324.1 165 PDVGH 169
                 9*998 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.023
        LSPR   1 tLSPDLs 7  
                 +LSPD +
  KKY21324.1 394 SLSPDTN 400
                 8****66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.51
# Mc/sec: 2996.65
//
Query:       KKY21325.1  [L=744]
Description: putative alcohol acetyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-11   41.6   0.0      1e-10   40.8   0.0    1.3  1  AATase    Alcohol acetyltransferase


Domain annotation for each model (and alignments):
>> AATase  Alcohol acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   5.7e-15     1e-10     123     478 ..     135     494 ..     109     504 .. 0.74

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 5.7e-15
      AATase 123 lnellselvipvgdpkkPlwrlivlpsaddkk..kwkkfv.fitdHllfDGisgvnffkdlleelekikqdnalkkdevildyekdveelekL..Pk.. 214
                  +++l+ + +++++ + P w+++v+p  ++++    + f+  ++ H++ DG+sg  f+   l+ l+   + na    e+++  ++ ++ + +L  P+  
  KKY21325.1 135 SLSILHGEPFSLDVMT-PRWKVVVVPMPSTEDlaLRRCFIsVVYSHSIGDGMSGLAFHGTFLKALKDTVDSNAQGPMEYVYPTSE-KPLPFQLdqPDcl 231
                 4566777788899999.********998888876677889999************************999999777888775543.3322222112211 PP

      AATase 215 pieekvdyrpslla.lpklllvsfiasklnfkkseekpltkehsavq.ksnkshqiilkispeevkkirakikknvhgkatlTpflqavffvalyklgk 311
                 pi+++    p l   lpkl   +f+    +f+ + +++ t   s ++ +++     i++++ + v    + ++++   +a lT+ l+  +  al k+  
  KKY21325.1 232 PISWSYLLAPLLGEyLPKL--AGFLRLPSEFSIDIDSTWTGALSFYKpEGHRTAIDIFSLDGSTVLSALKACRSH---DAKLTALLHQFIVNALSKV-- 323
                 2555555555554313333..3344444444444667777666655314566666799999999999999*****...******************7.. PP

      AATase 312 lfkeknse.vsidvaipvntRrylpedeevrdsykYgtvvggseFsylissldieeds.ke.klwelveeyhkrlseslsngkelkglgtlildlllky 407
                 l+    s+   i  ++ +n R ++ ++++  ++  Y + v  ++  + is  + + ++ ++  lw+ +  ++ +l +     + lk + t    ll   
  KKY21325.1 324 LPGSISSQkQIIISQTAINLRALVGVSNN--EMGLYASRVNQTHA-IDISREQESITDlNDpGLWSSARDLTAKLAQ---GSSTLKDQAT---GLLRYI 413
                 65554444044556899************..9999*****99775.7777665544331332599999999999988...3344444443...567777 PP

      AATase 408 vnidkllkkkilktkrstaevsNlGlfsq..........eeeskykvkdliFsqaagslknafslnvistnsgGlnlslsv 478
                  + +     ki k + +  e+sN+  f             ++  ++++ l+Fsq+a +   ++ +n++s+++g l + +s 
  KKY21325.1 414 TDTQAWTERKIGKPRDASYELSNILAFDPkndpssssndATKPGWSLQKLLFSQPANATGSPLAFNIVSVKDGDLVCVVSW 494
                 899999*****************876654466655554334445*****************************99998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 4560.54
//
Query:       KKY21326.1  [L=246]
Description: putative 1-aminocyclopropane-1-carboxylate oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.6e-29  100.7   0.1    1.3e-28  100.1   0.1    1.2  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    8.5e-09   35.8   0.0    2.2e-08   34.5   0.0    1.6  2  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   0.1   1.4e-32   1.3e-28       2     117 ..      11     134 ..      11     135 .. 0.92

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 1.4e-32
      DIOX_N   2 Pvidlspl.sdd.edraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKekl.aksp.sfrGysrlgeektdg.kkldwkesfdl 95 
                 Pv+d+s++ +dd  +r+++++++r+ c + Gff++++h++p el d++f+ ++eFF+++ eeK+kl +k +  +rGy +++++ +++ + +d+kesf++
  KKY21326.1  11 PVLDFSAFyADDpVARKRLVDDVRDCCLRNGFFQITGHQIPVELQDQIFRHSQEFFSQSVEEKDKLsMKLNaWNRGYDAIQSQILEEgTSPDMKESFYI 109
                 9*****999555489***************************************************63333499***********999*********** PP

      DIOX_N  96 gtelpeddp...agkplegpnqwPe 117
                 g + p+++p   ++k   gpn+wP+
  KKY21326.1 110 GDDIPKSHPyfqQKKLNSGPNVWPQ 134
                 *********997667799******7 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.4   1.2e+04      72      89 ..      39      55 ..      36      68 .. 0.61
   2 !   34.5   0.0   2.4e-12   2.2e-08       5      55 ..     186     241 ..     183     245 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.4
                  TTS-S----EEE----GT CS
  2OG-FeII_Oxy 72 sngryksvlHrVlpvneg 89
                   ng+++ + H +  v+ +
    KKY21326.1 39 RNGFFQITGHQIP-VELQ 55
                  6777777778776.4443 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 2.4e-12
                   EEEEEE-S-.-----..---EEEEEESSSEEEEEEE-TT---EEEE..TEEEE--- CS
  2OG-FeII_Oxy   5 lvlnyypph.pdpev..ilglgahtdaslltillqddvgglevfkd..gkwlrvpp 55 
                   ++l +ypp+ pd e   + g+gahtd + +t+llq dvggl+v+++  g+wl+v +
    KKY21326.1 186 MRLLHYPPSpPDAEEtlTRGVGAHTDFGGITLLLQGDVGGLQVLENntGEWLDVST 241
                   45566699955555478**************************8554588***976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1615.68
//
Query:       KKY21327.1  [L=598]
Description: putative siderophore iron transporter mira [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-19   70.1  35.2    8.3e-18   64.4  35.6    3.2  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        1.1    7.4  19.4       0.17   10.1   1.0    2.9  4  OATP      Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4  35.6   9.3e-22   8.3e-18      11     352 ..      49     478 ..      38     479 .. 0.81
   2 ?   -2.5   0.0       0.2   1.8e+03     156     173 ..     542     564 ..     539     592 .. 0.51

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 9.3e-22
       MFS_1  11 arsilgpalpl.alaedlgispseigllltl....yalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlgagalf 103
                 + +++ ++  +    +++  s+ + + ll++     +++ +++ ++++ lsd +Gr  ++ ++++l+ ++ l+l  a +++ + +v+ ++ ++g+ ++ 
  KKY21327.1  49 TTFTFDFVNYStSTYSAYATSAFSKHSLLSAsrvvATITNLLSYPIIAKLSDAIGRAELFAFSIALSTIA-LILYAAcQNIETYFVGVLFDSIGGVGFS 146
                 33333332222233344556666666677776665777889*****************************.5555345999999*************** PP

       MFS_1 104 pagaaliadwfpkeergraigllsagfslGa.ilgpllggllasslgWravfyilaivsllafv...lfllllpeepperkrkspkeee.......... 188
                  + +++iad+++  +rg+  +l  +  s+ +  lg +++  ++++  Wr+ + + a ++ ++++   l ++++ +++ e++   + ++           
  KKY21327.1 147 ITQQVFIADMTSLVNRGLWSSLPDTIGSIPTlYLGTIVADEMLEHSTWRWGYGMWATILPFCALpliLTVWVF-QRKAEKQEGYESQRAtiladvrsqd 244
                 *******************************99*****************************88774444444.33333333333333358******** PP

       MFS_1 189 ...................................................................kgtgpaplvpawkallkdpvlwillialllf. 219
                                                                                    +  +++p+vp +++++++     +++a++l  
  KKY21327.1 245 sifrkihqllwveldafgallliaglslilvpisltgsqksdrwsqphfiamlvvgfviaaafvvwdAFFAKKPFVP-YRLIKHRS----VVAACILSm 338
                 ***************************************99999999999888877777777776666666666666.77777777....444444444 PP

       MFS_1 220 ..ffgfsglltllplylqevlgls........glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlv 308
                   ff +s ++t++++ylq   ++s        ++l ++  + +++lv+a    ++ ++s+r  +++ +l++++l++l+  + ++l +++ ++++  +++
  KKY21327.1 339 ldFFHYSVFTTFFTSYLQVAGHYSaghatridNALRVA--FQIASLVAA----VLMKYSKR--AKPWILVGVPLMVLGQGLQIYLVNIHGTHAANEASF 429
                 55678888****************99998777557777..777777763....66788999..566**********************77777777666 PP

       MFS_1 309 l.....iGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 +     +G+g gf+++++++ ++  ++ +e + ++++f  a +lgga+g
  KKY21327.1 430 VtaktlVGVGRGFYQTAAQVTIQAIVSHQEVAVVTAVFFAAMNLGGAIG 478
                 668898******************************************9 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.2
       MFS_1 156 ilaivsllafvlfllll.....p 173
                 i++ v+l+ ++l+++++     +
  KKY21327.1 542 IAGTVALVPMLLAMWFFknvdlL 564
                 44444444455555555333331 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2      0.26   2.4e+03      45      85 ..      84     124 ..      73     131 .. 0.77
   2 ?    7.6   4.7   0.00011      0.99     287     356 ..     285     389 ..     185     419 .. 0.60
   3 ?   10.1   1.0   1.9e-05      0.17     134     190 ..     428     484 ..     415     489 .. 0.90
   4 ?   -3.3   0.0      0.22     2e+03     221     259 ..     542     583 ..     540     597 .. 0.43

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.26
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP  45 neignillilfvsYfggrghrPrwigigallmalgslllal 85 
                   i+n+l   +++ + +   r+ + ++++ l +++ +l+a 
  KKY21327.1  84 ATITNLLSYPIIAKLSDAIGRAELFAFSIALSTIALILYAA 124
                 56888888888888888888888888888888888888775 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00011
                 x....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 287 l....................................krllknpifllvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGil 349
                                                       rl+k++  +  ++ s+++++ ++ f tF + yl++  + sa +A+ +  ++ + + ++  l
  KKY21327.1 285 SdrwsqphfiamlvvgfviaaafvvwdaffakkpfvpYRLIKHRSVVAACILSMLDFFHYSVFTTFFTSYLQVAGHYSAGHATRIDNALRVAFQIA-SL 382
                 03333333334445555555555555555555555559*********************************************9977777655544.45 PP

                 xxxxxxx RF
        OATP 350 lgGllvk 356
                 ++ +l+k
  KKY21327.1 383 VAAVLMK 389
                 5556655 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 1.9e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 134 lfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGsl 190
                  f+ a++l+G+G+  ++t ++  i   v++++ ++  ++++a+  lG a+G  ++++
  KKY21327.1 428 SFVTAKTLVGVGRGFYQTAAQVTIQAIVSHQEVAVVTAVFFAAMNLGGAIGTSVSGA 484
                 699************************************************988876 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 0.22
                 xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxx RF
        OATP 221 ilgvllllaaiplffFPke...lpkkkeerakkkseeesaek 259
                 i+g+++l+  ++ ++F k+   l++ k++++++  ++++ e 
  KKY21327.1 542 IAGTVALVPMLLAMWFFKNvdlLKEDKDREHASMDTPKQVEP 583
                 566666666666555555547533333333333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       899  (0.0501422); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 4007.37
//
Query:       KKY21328.1  [L=310]
Description: putative gluconolactonase precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-35  121.5   0.0      5e-35  121.3   0.0    1.0  1  SGL           SMP-30/Gluconolactonase/LRE-like region
     0.0005   20.1   0.0      0.015   15.4   0.0    2.4  2  Str_synth     Strictosidine synthase
  ------ inclusion threshold ------
      0.087   13.0   0.0        5.8    7.2   0.0    2.4  2  Arylesterase  Arylesterase


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.3   0.0   8.4e-39     5e-35       1     244 [.      23     274 ..      23     276 .. 0.92

  Alignments for each domain:
  == domain 1  score: 121.3 bits;  conditional E-value: 8.4e-39
         SGL   1 lgEGpvwdeeegaLlwvDilgqrihrldpatgketvldtpe..svGaiaprkdgrlvvasksglalldlasgeletladeeedekpllrfNDgvvdpdG 97 
                 +gE+p++   eg L  +D++g++i++++  +g+++vl   e  ++G+ +   dg l+  s  +  l+ l++g  + +ad   +++      D+v+d++G
  KKY21328.1  23 FGESPRYR--EGLLCVSDMTGRTIYTINVLSGEKEVLVEVEnqPNGMCFA-SDGSLIYSSMFDAKLYRLKDGHSTLYADM--SKVMTGYCGDMVIDQAG 116
                 79*****9..7*****************998888885444448*******.***************************99..5667999********** PP

         SGL  98 rlwfGtmgdeeakgeev..galyrldpdgklervlddltipNGlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkge........... 183
                 r++  + g +  +ge++  g l+r+++dg++e+ ++++ +pN+l +s+dg+ l++a++    + ++d+  +g+ l nr+ + d +              
  KKY21328.1 117 RVFLDDTGAKVLHGEKPkpGRLLRIETDGTTEVAAEHIIFPNALFISNDGTSLFVAETFGYGLLKFDLHGSGE-LLNRQEWWDPASISggekgntssgi 214
                 ****999999888888888*************************************************87777.8888888777766666799999977 PP

         SGL 184 .gepDGlavDaeGnvwvAvwgggkvvrfdpdGklieeiklpakrvtscaFgGpdlrtLyits 244
                  g +DG ++DaeG+vw  +++ ++ vr+d  G+++++ik++  + t+c++gG d +tL++++
  KKY21328.1 215 iG-IDGGCMDAEGGVWLSMLSLETFVRLDARGQITHRIKTK-GHATACTLGGDDGKTLFLVT 274
                 54.*************************************9.9****************998 PP

>> Str_synth  Strictosidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.038   2.3e+02      34      74 ..      38      79 ..      28      88 .. 0.74
   2 !   15.4   0.0   2.5e-06     0.015      32      76 ..     131     174 ..     109     184 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.038
   Str_synth 34 dktGr.llkydkstkvvkvlldkLyfanGialsedgsfvlvc 74
                d tGr ++  +    +  vl++    +nG+  ++dgs + ++
  KKY21328.1 38 DMTGRtIYTINVLSGEKEVLVEVENQPNGMCFASDGSLIYSS 79
                56666334555556677899999999*********9977655 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2.5e-06
   Str_synth  32 egdktGrllkydkstkvvkvlldkLyfanGialsedgsfvlvcet 76 
                 e+ k Grll+ +     + v ++++ f+n + +s+dg+++ v+et
  KKY21328.1 131 EKPKPGRLLRIET-DGTTEVAAEHIIFPNALFISNDGTSLFVAET 174
                 566789**99875.4567789**********************98 PP

>> Arylesterase  Arylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.019   1.1e+02      44      82 ..      52      89 ..      36      93 .. 0.82
   2 ?    7.2   0.0   0.00096       5.8      46      73 ..     147     174 ..     143     181 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.019
  Arylesterase 44 sevkvvasglssanGInidadkkyiyvadilresihvmk 82
                  +e +v ++  + +nG+ + +d   iy +++ + +++++k
    KKY21328.1 52 GEKEVLVEVENQPNGMCFASDGSLIY-SSMFDAKLYRLK 89
                  555566666689*************9.799999999988 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00096
  Arylesterase  46 vkvvasglssanGInidadkkyiyvadi 73 
                    +v+a+ ++++n + i+ d  +++va+ 
    KKY21328.1 147 TEVAAEHIIFPNALFISNDGTSLFVAET 174
                   57899*********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1925.72
//
Query:       KKY21329.1  [L=496]
Description: putative flavin-containing monooxygenase-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-13   48.2   0.0    2.4e-12   46.8   0.0    1.7  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    3.3e-12   45.6   0.0    4.1e-09   35.4   0.0    2.9  2  FMO-like       Flavin-binding monooxygenase-like
    1.6e-09   37.4   0.0    4.6e-06   26.0   0.0    2.9  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    9.1e-09   35.0   0.0    2.4e-06   27.0   0.0    2.3  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    4.1e-08   33.3   0.1    1.9e-06   28.0   0.0    2.8  3  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    1.9e-07   31.0   3.2     0.0025   17.4   0.1    4.5  5  DAO            FAD dependent oxidoreductase
    5.4e-07   29.1   0.0    5.3e-05   22.6   0.0    2.4  2  Thi4           Thi4 family
    1.4e-05   24.4   0.2      0.003   16.7   0.0    2.8  3  Lycopene_cycl  Lycopene cyclase protein
    2.8e-05   24.6   0.0        0.1   13.2   0.0    2.5  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      0.001   19.1   1.0          3    7.8   0.1    3.4  3  NAD_binding_9  FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.021   13.4   0.0       0.58    8.6   0.0    2.4  2  Mqo            Malate:quinone oxidoreductase (Mqo)
       0.03   14.2   0.0      0.057   13.3   0.0    1.4  1  Wzy_C_2        Virulence factor membrane-bound polymerase, C-
      0.068   13.2   0.0        4.3    7.4   0.0    2.8  3  Shikimate_DH   Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   1.7e-15   2.4e-12       1     197 [.      16     218 ..      16     236 .. 0.80
   2 ?   -3.7   0.0       3.9   5.3e+03     119     133 ..     337     351 ..     318     364 .. 0.63

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 1.7e-15
  Pyr_redox_3   1 iIiGaGPaGlaaaielkka.gledylilEkg.nignsiyrypkemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksfel 96 
                  +++GaG  G+++a++++ +    +y+ilE   nig ++  ++      +++          l  +  e +p ++ ++  + ++ +++Yl e a+s+ +
   KKY21329.1  16 VVVGAGISGINMAHHVQSKvPHLRYTILEARnNIGGTWDLFRYPGIRSDTD----------LLTFGFEWKP-WTENQAIADGESIARYLHEAAASEGI 102
                  79*************997624569*****887*****99888777664443..........2223334455.666778899**************998 PP

  Pyr_redox_3  97 ..piklfeeVes...vkk.edegfevetske...tyeAkkviiAtGefd..kPnklnipGeek....lvkhyskvkefhkyagqkvvViGgknSavDa 179
                    +ik  ++V +   v++ +  + +v++++    +++++++i+ tG++d  kP + +ipG  +    +v+h +  +e  +yag+++v++G + +a+  
   KKY21329.1 103 drHIKFRHRVIAadwVSEsQTWNLIVDADHTghvNLRTRFLILGTGYYDylKPLQAQIPGLYDnfkgKVVHPQFWPEDLDYAGKRIVIVGSGATAITL 200
                  44699999997722255523445788877766679*************94459999****8754545677888888888******************* PP

  Pyr_redox_3 180 AlelvrkgaeVtvvtrgs 197
                     l++kg  Vt++ r+ 
   KKY21329.1 201 LPSLAAKGGLVTMLQRSP 218
                  ***************986 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.9
  Pyr_redox_3 119 sketyeAkkviiAtG 133
                  s + +eA+ ++ AtG
   KKY21329.1 337 SGQRLEADIIVTATG 351
                  334455555555555 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0     0.006       8.3       4      41 ..      15      54 ..      12      60 .. 0.80
   2 !   35.4   0.0     3e-12   4.1e-09      84     373 ..      87     397 ..      76     426 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.006
    FMO-like  4 vaviGaGvsGlasikcclee..gleptcfersddiGGlwr 41
                v v+GaG+sG+   +    +   l  t +e  ++iGG w 
  KKY21329.1 15 VVVVGAGISGINMAHHVQSKvpHLRYTILEARNNIGGTWD 54
                89********987665544322799**************6 PP

  == domain 2  score: 35.4 bits;  conditional E-value: 3e-12
    FMO-like  84 sklleylklfakefdllkyiqfkttvcsvkkrpdfstsGqwevvtekegkkesavfdav.mvctGhhvnphlplesfpGi.ekfkGqyfhsrdykepev 180
                 + +  yl++ a   ++ ++i+f+  v++ +    +s+s  w+++ + +   ++++     ++ tG++ + +  +   pG+ ++fkG+++h + + e   
  KKY21329.1  87 ESIARYLHEAAASEGIDRHIKFRHRVIAADW---VSESQTWNLIVDADHTGHVNLRTRFlILGTGYYDYLKPLQAQIPGLyDNFKGKVVHPQFWPEDLD 182
                 67889*******************9998654...577889********99999998765156789988877556679**8579**************** PP

    FMO-like 181 fkgkrvlviGlGnsggdiavelsrtaeqvlls............trsGswv...lsrvsdsG.ypwdmllvtrfksllknilptalsnwlvekklnkrf 263
                 + gkr++++G G ++  +   l+ +   v +             t+  sw+   l +++ s    w ++ +t + ++l +++p+   ++l+ k   +  
  KKY21329.1 183 YAGKRIVIVGSGATAITLLPSLAAKGGLVTMLqrsptyilsidnTTGESWIhkmLPKSWSSKlSRWTFMTTTALIYYLCRAFPSLARSALLGKVTKQLP 281
                 **************9887766666655555540000000002223334555222223333321357777888888888898898888888777666666 PP

    FMO-like 264 nheny..glkpkkralake..pvlndelparilaGavkvk.ssvkeltetsaifedgtveedidvvifatGytfafp.fleeslvkveknkvslykkvf 356
                 nh      ++p  r   ++  ++ + ++ +++   + +v  +++k +te ++++e g + e  d+++ atG  ++f   ++ s+ k+  n +  y    
  KKY21329.1 282 NHVPVdpHFQPIYRPWDQRlcFTPDGDFFKCMRESTATVAtGRIKTITEDTIMLESGQRLE-ADIIVTATGLKLDFGgHIHISVDKSPINVAEKYAWRT 379
                 7754311355555554444115556788888888777775268999999999999999887.5999999999999953566676666666666666555 PP

    FMO-like 357 panlekptla.iiGliqp 373
                  +  + p la i+G++++
  KKY21329.1 380 SMLQDVPNLAfIMGYVNA 397
                 555566666644566654 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0     0.002       2.8     191     225 ..      12      46 ..       3      52 .. 0.64
   2 !   26.0   0.0   3.3e-09   4.6e-06     100     226 ..      91     218 ..      79     236 .. 0.80
   3 ?    0.3   0.0      0.22     3e+02     321     340 ..     333     352 ..     275     354 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.002
  K_oxygenase 191 kkriaVvGsGqSaaeifedllrrqkkvelklvtrs 225
                    +++VvG+G S+ ++++++ ++ ++   +++  +
   KKY21329.1  12 TYDVVVVGAGISGINMAHHVQSKVPHLRYTILEAR 46 
                  45667777777777777776666666555554444 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 3.3e-09
  K_oxygenase 100 dYlrWva..sqleeqvrfgeeveevepdeeeeeelltveskdaegeeeelearnlvlgvGt.......epkiPevleklegkervvHsseylerkeel 188
                  +Yl+++a  + ++ +++f ++v + ++++e+++  l v+  d++g + +l++r l+lg+G        +++iP ++++++   +vvH +   e+   +
   KKY21329.1  91 RYLHEAAasEGIDRHIKFRHRVIAADWVSESQTWNLIVDA-DHTG-HVNLRTRFLILGTGYydylkplQAQIPGLYDNFK--GKVVHPQFWPEDL--D 182
                  688777622569999***************9888888886.5666.689***********53344444678999999998..6****99888887..8 PP

  K_oxygenase 189 lakkriaVvGsGqSaaeifedllrrqkkvelklvtrse 226
                   a+kri++vGsG +a  ++  l+++     ++++ rs+
   KKY21329.1 183 YAGKRIVIVGSGATAITLLPSLAAKGG--LVTMLQRSP 218
                  9**************999988887765..566666665 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.22
  K_oxygenase 321 eesgeeetlevdavvlATGY 340
                   + ++ ++le+d++v+ATG 
   KKY21329.1 333 IMLESGQRLEADIIVTATGL 352
                  345667899**********6 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.7e-09   2.4e-06       1     178 [.      13     221 ..      13     239 .. 0.70
   2 !    5.6   0.0     0.006       8.2     205     239 ..     324     354 ..     312     373 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.7e-09
                  CSEEEE--SHHHHHHHHHHHHH..TS-EEEEE..................TTHCHHHCSHHHHCHHHHHHHHHHHHH.............HHHHCHHH CS
                  xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqa..gakvtlve..................legtclnggcllskallgvaedaeias.............evvkklnq 65 
                  +dvvv+G+G+ G+++a++++ +   ++ t++e                  +++ +l++g   +++ ++ a                       + +  
   KKY21329.1  13 YDVVVVGAGISGINMAHHVQSKvpHLRYTILEarnniggtwdlfrypgirSDTDLLTFGFEWKPWTENQA------IadgesiarylheaAASEGIDR 104
                  69*******************5558999999655555555556666666666666666666666555544......0333335689999966667888 PP

                  HCCCCHCCTCEEEE..ESCEEEEETEEEC.TCEEEEEESEEEE---E....EE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHH CS
                  xxxxxxxxxxxxxx..xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  66 gielllgeevvkid..pgkkkvklekkke.gdeekiaydklvlAtGs....sprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvE 156
                  +i+++++  v++ d   ++++  l  + +   + ++    l+l tG     +p   +ipG+  +++k+     +  +  l+   kriv+vG+G++++ 
   KKY21329.1 105 HIKFRHR--VIAADwvSESQTWNLIVDADhTGHVNLRTRFLILGTGYydylKPLQAQIPGL-YDNFKGKVVHPQFWPEDLDYAGKRIVIVGSGATAIT 199
                  9999999..66666444444444433333344578999********8777777777*****.444456344445444444555599************ PP

                  HHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 157 lAaalaklgkevtlveardrll 178
                  l   la  g  vt++++ ++  
   KKY21329.1 200 LLPSLAAKGGLVTMLQRSPTYI 221
                  ******99999****9998765 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.006
                  EEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 205 svkeidgngeklevvledgeeidadlvvvavGvrp 239
                  ++k+i++++      le+g++++ad +v+a+G++ 
   KKY21329.1 324 RIKTITEDT----IMLESGQRLEADIIVTATGLKL 354
                  455555444....799****************986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.4e-09   1.9e-06       1      48 [.      17      66 ..      17      78 .. 0.90
   2 ?    2.1   0.1      0.17   2.4e+02       1      27 [.     190     216 ..     190     220 .. 0.81
   3 ?   -3.0   0.0       6.5     9e+03      45      56 ..     354     365 ..     347     382 .. 0.57

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.4e-09
                   EE--SHHHHHHHHHHHCC..TEEEEEE-SSSSSSGGG-EECETTCEECTS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka..gfdvlllekrdrlGGraasyevpgvrvdyg 48
                   +vGaG+sG  +A++ + +  +++ ++le+r+ +GG +  +++pg+r d+ 
     KKY21329.1 17 VVGAGISGINMAHHVQSKvpHLRYTILEARNNIGGTWDLFRYPGIRSDTD 66
                   8***************988899********************99887765 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.17
                    EE--SHHHHHHHHHHHCCTEEEEEE-S CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllek 27 
                    IvG+G+++ ++   La +g  v+ l++
     KKY21329.1 190 IVGSGATAITLLPSLAAKGGLVTMLQR 216
                    9********999888888777777665 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 6.5
                    ECTS---EEETT CS
  NAD_binding_8  45 vdygahifhgsg 56 
                    +d g hi  +++
     KKY21329.1 354 LDFGGHIHISVD 365
                    455555544433 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.8e-06    0.0025       1      36 [.      14      52 ..      14      54 .. 0.89
   2 ?    1.4   0.0      0.14   1.9e+02     136     213 ..      77     156 ..      59     179 .. 0.71
   3 !    5.4   0.2    0.0083        11       1      30 [.     187     218 ..     187     263 .. 0.83
   4 ?    1.6   0.0      0.12   1.7e+02     240     271 ..     279     311 ..     263     331 .. 0.73
   5 ?    1.4   0.0      0.13   1.9e+02     165     229 ..     322     381 ..     309     395 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.8e-06
                EEEEECTSHHHHHHHHHHHHT.T...EEEEESSSSTTSSG CS
         DAO  1 dvviiGGGiiGlstAyeLarr.g...Vtllekgdiagsga 36
                dvv++G+Gi G+  A++ + + +    t+le+++ +g g+
  KKY21329.1 14 DVVVVGAGISGINMAHHVQSKvPhlrYTILEARNNIG-GT 52
                9*****************65554799*******9999.76 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.14
                 EETTEEEEEHHHHHHHHHHHHHHTT-..EEEESECEEEEEEEE.TCEEEEE...EECT.EEE..EEEEEEEE--GGGHHHHHTTCTT CS
         DAO 136 fypdtgqvdpakltaalaraaealGv..eilegtevtgleeed.gkvwgve...rttp.gen..daadavVnaaGawsdllgllkel 213
                 ++ +++++d +  +++l +aa++ G+  +i ++++v + +  +  + w++    +  + g++  ++ + +++ +G + d l   k+l
  KKY21329.1  77 WTENQAIADGESIARYLHEAAASEGIdrHIKFRHRVIAADWVSeSQTWNLIvdaD--HtGHVnlRT-RFLILGTGYY-DYL---KPL 156
                 67788999999999******99999855677777777764422467788888532..336553233.6699999988.545...444 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0083
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSS CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtllekgd 30 
                 ++vi+G+G + ++    La++g  Vt l +++
  KKY21329.1 187 RIVIVGSGATAITLLPSLAAKGglVTMLQRSP 218
                 59*****************9977*****9985 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.12
                 SEEEEEEEETTTTEEEEEETTSEEEEEESSE..E CS
         DAO 240 ilpvpetdddgrgvyvtprkdgrvlvGgtad..e 271
                 +lp+++++d+++ ++++p+ d+r+++ +++d  +
  KKY21329.1 279 QLPNHVPVDPHFQPIYRPW-DQRLCFTPDGDffK 311
                 45666699**********9.699***99887662 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.13
                 ESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHHHHHTTCTT..TSEEEEEEEEEEEEEE CS
         DAO 165 egtevtgleeedgkvwgverttpgendaadavVnaaGawsdllgllkel..dlpispvrgqvlvlkp 229
                 +g +++ + e      ++   ++g++ +ad +V a+G+  d+ g +++   + pi  +  + ++++ 
  KKY21329.1 322 TG-RIKTITE-----DTI-MLESGQRLEADIIVTATGLKLDFGGHIHISvdKSPINVAEKYAWRTSM 381
                 33.3333322.....222.122255535699********9966333222434788777777777754 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.9e-08   5.3e-05      18      58 ..      13      53 ..       3      76 .. 0.90
   2 ?    3.8   0.0      0.02        28      13      43 ..     181     211 ..     171     220 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.9e-08
                EEEEEE--SHHHHHHHHHHHHC.TTS-EEEEESSSS--TTTT CS
        Thi4 18 sDvvivGaGssGLtaayylakk.pdlkvailersvspGGGaw 58
                 Dvv+vGaG sG+  a+ +  k p l+ +ile++  +GG +w
  KKY21329.1 13 YDVVVVGAGISGINMAHHVQSKvPHLRYTILEARNNIGG-TW 53
                59***************999999***********99987.44 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.02
                 HHHTEEEEEEE--SHHHHHHHHHHHHCTTS- CS
        Thi4  13 lkyaesDvvivGaGssGLtaayylakkpdlk 43 
                 l+ya   +vivG+G++ +t    la k +l 
  KKY21329.1 181 LDYAGKRIVIVGSGATAITLLPSLAAKGGLV 211
                 689****************999999886664 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.1e-06     0.003       1      36 [.      14      49 ..      14      57 .. 0.91
   2 ?   -1.1   0.0      0.55   7.6e+02       2      37 ..     188     221 ..     188     239 .. 0.77
   3 ?    4.2   0.0     0.014        19     101     142 ..     317     353 ..     310     366 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.1e-06
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   Dvvv+GaG  g+ +A+++ ++ p l+ +++ea +++
     KKY21329.1 14 DVVVVGAGISGINMAHHVQSKVPHLRYTILEARNNI 49
                   9*****************9999********998765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.55
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsll 37 
                    +v++G+G+  + l   l  a++g  v++++ sp  +
     KKY21329.1 188 IVIVGSGATAITLLPSL--AAKGGLVTMLQRSPTYI 221
                    79***********9999..66666677777777665 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.014
  Lycopene_cycl 101 gvklleakvesveeeeageslvvleggrkirarlvvdargla 142
                          a+v+  + ++ +e +++le g++++a ++v a+gl 
     KKY21329.1 317 T-----ATVATGRIKTITEDTIMLESGQRLEADIIVTATGLK 353
                    3.....4444444444466677******************65 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0017       2.4       2      35 ..      15      50 ..      14      54 .. 0.77
   2 !   13.2   0.0   7.4e-05       0.1       1      49 [.     187     235 ..     187     242 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0017
                EEEECSSHHHHHHHHHHHHTT..SEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelg..kkVtvversdkll 35
                vvvvG+G +g+ +A   +      + t++e+++++ 
  KKY21329.1 15 VVVVGAGISGINMAHHVQSKVphLRYTILEARNNIG 50
                8*************9886654345777777777765 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 7.4e-05
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHH CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqek 49 
                 ++v+vG+G +++ l   la+ g  Vt+++rs++    +D+++++ +  k
  KKY21329.1 187 RIVIVGSGATAITLLPSLAAKGGLVTMLQRSPTYILSIDNTTGESWIHK 235
                 79******************************99977777777665554 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1    0.0022         3       1      42 [.      16      53 ..      16      62 .. 0.84
   2 ?    2.8   0.0     0.078   1.1e+02       1      20 [.     189     208 ..     189     237 .. 0.78
   3 ?    5.3   0.0     0.013        18     132     154 ..     329     351 ..     310     353 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0022
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagrvw 42
                   ++vGaG++G+ ++ ++ ++     +l+ t+ + ++   g+ w
     KKY21329.1 16 VVVGAGISGINMAHHVQSKV---PHLRYTILEARNNI-GGTW 53
                   69*************99995...88999999996554.4666 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.078
  NAD_binding_9   1 aivGaGprGlavlerLlara 20 
                    +ivG G++++++l  L+a+ 
     KKY21329.1 189 VIVGSGATAITLLPSLAAKG 208
                    7***************9986 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.013
  NAD_binding_9 132 dgqavlladgaslaadaVvLAlG 154
                    ++ +++l++g++l+ad +v A+G
     KKY21329.1 329 TEDTIMLESGQRLEADIIVTATG 351
                    345899****************9 PP

>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00042      0.58       2      40 ..      12      50 ..      11      52 .. 0.92
   2 ?    1.9   0.0     0.046        64     194     240 ..     102     148 ..      83     165 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00042
         Mqo  2 kvdvvliGaGimsatlgvllkelepelsievlerldkva 40
                ++dvv++GaGi    ++  +++  p+l+ ++le  ++++
  KKY21329.1 12 TYDVVVVGAGISGINMAHHVQSKVPHLRYTILEARNNIG 50
                68*******************************988765 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.046
         Mqo 194 kgvelklkhevkdlkr.eedgkWkvkvkdlktgekkkvkakfvfiGaG 240
                  + ++k++h+v   +  +e+++W++ v   +tg + +++++f+ +G+G
  KKY21329.1 102 IDRHIKFRHRVIAADWvSESQTWNLIVDADHTG-HVNLRTRFLILGTG 148
                 3557888899988775156679***99866655.5699********99 PP

>> Wzy_C_2  Virulence factor membrane-bound polymerase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.1e-05     0.057     121     171 ..     366     416 ..     361     428 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.1e-05
     Wzy_C_2 121 lspenlaaklalarklihlsPepavierlilslallGdedeAeqilarara 171
                 +sp n+a+k+a+   ++++ P  a+i  +  + + lG e  A+ + + +r+
  KKY21329.1 366 KSPINVAEKYAWRTSMLQDVPNLAFIMGYVNASWTLGAETTAQLVCRLLRY 416
                 6899***************************************99998885 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.13   1.8e+02      12      34 ..      12      34 ..       4      43 .. 0.85
   2 ?    7.4   0.0    0.0031       4.3      10      47 ..     183     219 ..     178     238 .. 0.84
   3 ?   -1.9   0.0       2.3   3.2e+03      75      84 ..     342     351 ..     336     354 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.13
                  T-EEEEES-SHHHHHHHHHHHCC CS
  Shikimate_DH 12 ekkvlliGaGemaelvakhLlak 34
                  +  v+++GaG  +  +a+h  +k
    KKY21329.1 12 TYDVVVVGAGISGINMAHHVQSK 34
                  5689*********9999998876 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0031
                   .TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHH CS
  Shikimate_DH  10 lkekkvlliGaGemaelvakhLlakgvkkvvvaNRtle 47 
                   +++k+++++G G +a  ++  L+akg   v+ + R+ +
    KKY21329.1 183 YAGKRIVIVGSGATAITLLPSLAAKGGL-VTMLQRSPT 219
                   6799********************9987.888888765 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.3
                   T-SEEEE-SS CS
  Shikimate_DH  75 eadvvisata 84 
                   ead++++at+
    KKY21329.1 342 EADIIVTATG 351
                   79******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 3004.60
//
Query:       KKY21330.1  [L=320]
Description: putative amidohydrolase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-24   86.2   0.1    3.8e-24   86.0   0.1    1.0  1  Amidohydro_2  Amidohydrolase
  ------ inclusion threshold ------
       0.14   11.9   0.0       0.29   10.9   0.0    1.4  1  SAVED         SMODS-associated and fused to various effectors


Domain annotation for each model (and alignments):
>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.1   4.2e-28   3.8e-24      18     290 ..      32     317 ..      13     318 .. 0.84

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 4.2e-28
                   CCGGCTSCCCHHHHHCHHTSSECCCEHCHHHHHHHHTSHHCHHHHHHH.HHHHHHHHHHHHHHHCTTCBECEEEC.TSSHCHHHHHHHHHHHHTTEC CS
  Amidohydro_2  18 gepngfdpeerlafmkragvdpqlaspeallvlnaaagiaravivaal.crgannrvlaeaakrpdrfvggaavv.pldpedaaaeleraveelgfk 112
                   g+p g++ +e+  ++++a ++ + +s+++l+ +   a i +   +aa+ +r++n+ +++  +++p+ ++++aa++ +ld e a++e+  a++ l++ 
    KKY21330.1  32 GDPSGWFVPEWDLELDDAVNTKFGISTTILSLTAPGACILKDPQQAAElARKTNEFAAKIRDDHPPKYGFFAALPnLLDKEIALKEIAYAFDVLKAD 128
                   6777777777778888888888888888888887777776655555550555555555666689***********89999***************** PP

                   EEEEESSTTTCCTTTCGGH.HHHHHHHHHHT-EEEEE.............CHHHCHHHHHHHHHHHHHHHCCHHHHCTTSEEEESGGGTT....... CS
  Amidohydro_2 113 Gvrlnphvggddllgdrld.rpifealeelglpvdihtGps.........pewlfggpqettraiqplllsgvarkfPnlkivlaHgGgp....... 192
                   Gv l +++g ++++  + +   i++ l+++ ++v +h++++         p+ ++ +p ett++ +++l +  +r  Pn ki+l+H+Gg+       
    KKY21330.1 129 GVTLFTRYGTGHHYLGHPEfKDIWAELNRRSAVVLVHPTHPvdtnqvsnlPQPVIRYPFETTTTALDMLHNKTVRNNPNCKIILSHAGGTlpfligr 225
                   *********999999998889****************9999*****************************************************666 PP

                   .....TTCHHHHHHHHHHHHHCCEEECCGHHHSSEEECCHHCHHHHHHHHHHH-GGGEEEE--BTSTTSTSCTTHHHHCHHHHHSSHHHHHHHHTHH CS
  Amidohydro_2 193 .....serlraalellarrpnvyvklsglytellyfdspladppalarlieavgpdrilfGsDyPhptleaepealalldlvallsdeerekilggN 284
                        ++  +++ e++++ +++y+++            ++ ++++l  l   + p +il+GsD P+ +  + +     +d ++  +    +ki ++N
    KKY21330.1 226 pasilPKSKQELDEFWDDVRSFYFDVA-----------VAGTQNVLQILEWFAKPGHILYGSDTPYANDHIIDFHTSRFDEYKFKDVHMTDKINREN 311
                   666665555666666666666666663...........45667778777778899**************88877777777766689999******** PP

                   HHHHCT CS
  Amidohydro_2 285 Aarlyg 290
                   A +l++
    KKY21330.1 312 ALALFP 317
                   ***997 PP

>> SAVED  SMODS-associated and fused to various effectors sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.2e-05      0.29     103     155 ..      58     107 ..      45     109 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.2e-05
       SAVED 103 lpiieitlpnpgndairspedlealakavrdalrelkaehgvkriHlfaaaPa 155
                  +i+++t+  pg  ++++p+++++la++ ++   +++++ +  +  +faa P+
  KKY21330.1  58 TTILSLTA--PGACILKDPQQAAELARKTNEFAAKIRDD-HPPKYGFFAALPN 107
                 44555555..56678************************.7999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.54
# Mc/sec: 1769.94
//
Query:       KKY21331.1  [L=538]
Description: putative alcohol dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-46  158.9   0.1    4.6e-27   95.1   0.1    2.6  2  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    5.7e-30  104.2   1.2    7.3e-30  103.9   0.1    1.7  2  adh_short       short chain dehydrogenase
    1.7e-19   70.1   2.2    5.8e-19   68.4   1.3    2.3  3  ADH_zinc_N      Zinc-binding dehydrogenase
    1.8e-08   35.5   0.0    0.00064   20.8   0.1    3.1  2  ADH_zinc_N_2    Zinc-binding dehydrogenase
    3.4e-08   33.6   0.0    7.8e-08   32.4   0.0    1.6  1  KR              KR domain
    3.5e-05   23.4   1.4    6.1e-05   22.6   0.8    1.6  2  Glu_dehyd_C     Glucose dehydrogenase C-terminus
     0.0065   15.8   0.6      0.015   14.6   0.6    1.6  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
     0.0082   16.8   0.6        6.9    7.4   0.6    2.8  2  NAD_binding_3   Homoserine dehydrogenase, NAD binding domain
  ------ inclusion threshold ------
       0.01   15.2   0.0      0.043   13.1   0.0    2.1  1  THF_DHG_CYH_C   Tetrahydrofolate dehydrogenase/cyclohydrolase
      0.022   14.6   0.3      0.053   13.3   0.3    1.6  1  DFP             DNA / pantothenate metabolism flavoprotein
      0.025   13.9   0.3       0.16   11.3   0.1    2.1  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
      0.049   13.2   0.6       0.17   11.5   0.6    1.8  2  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
      0.094   12.6   0.4      0.094   12.6   0.4    2.0  2  Bacillus_PapR   Bacillus PapR protein
       0.65    9.3   3.1       0.83    9.0   0.9    2.0  2  ThiF            ThiF family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.1   3.6e-30   4.6e-27       1     134 [.     312     460 ..     312     465 .. 0.90
   2 !   62.1   0.0   4.3e-20   5.6e-17     161     234 .]     461     533 ..     457     533 .. 0.95

  Alignments for each domain:
  == domain 1  score: 95.1 bits;  conditional E-value: 3.6e-30
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSE.E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG..CSS-GGGH- CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgae.v.lecDVtdeeqvealveevvekfgklDilvnnagiapk..lkgpflets 91 
                   Ga sg+GraiA ++ ++Ga vv++ +  +a  ++ ++el ++ g + +  ++DV + e++++lv+ +v++fg+lDi+vnnagiap+     p+ et+
    KKY21331.1 312 GASSGLGRAIALTFVRHGAMVVCAHQAASArhEQPTHELIRQSGGKsIfKPTDVGNAESMQSLVQSTVKEFGRLDIMVNNAGIAPEasEPRPVWETT 408
                   899*********************9999888788999999999977656*************************************99999****** PP

                   HHHHHHHHHHHTHHHHHHHHHHHH.HCTSC........CEEEEEEEGGGTSB CS
  adh_short_C2  92 reefdraldvnlyslfllakaalp.lmkeg........gsivnlssvgaerv 134
                   +e+fd ++ vn++++fl +k+    ++k+         g i+n++sv +  +
    KKY21331.1 409 EEDFDSVCRVNIRGVFLGCKYGGAqMIKQArnpqcnraGTIINMASVLGVLG 460
                   *********************99954444367889999********987665 PP

  == domain 2  score: 62.1 bits;  conditional E-value: 4.3e-20
                   GGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 161 pkgiRvNavspgpikTlaasgikgfdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                     g  vNa sp +++T++ s+i + +e +++l++ +pl+rlgtp+e+a+aa+fLas+++++itG +l vDgGl+
    KKY21331.1 461 LAGTPVNALSP-VTRTPMISKIINDNESERHLAQLHPLQRLGTPDEIANAAVFLASEMSEGITGVNLSVDGGLH 533
                   567789****9.68**********************************************************98 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       5.1   6.6e+03      12      47 ..     109     144 ..     102     155 .. 0.65
   2 !  103.9   0.1   5.7e-33   7.3e-30       1     147 [.     306     465 ..     306     470 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.1
                 HHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT CS
   adh_short  12 IGraiakelakeGakvvv.vdrseekleevakelkee 47 
                 +G+a   +  + G++ +v vd+ +ekl ++a+ l++ 
  KKY21331.1 109 VGLAAMLAAKALGVRDIVaVDIVDEKL-QLASDLGAS 144
                 555555556666766565588888888.777777664 PP

  == domain 2  score: 103.9 bits;  conditional E-value: 5.7e-33
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S....S--SSG CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi....tgsgpf 93 
                 kv ++tGassG+Graia ++++ Ga vv+  +  +++ e+   el ++ g k ++ ++Dv ++e+++ lv+  vk++g+ld++vnNAGi    ++++p+
  KKY21331.1 306 KVSVITGASSGLGRAIALTFVRHGAMVVCaHQAASARHEQPTHELIRQsGGKSIFKPTDVGNAESMQSLVQSTVKEFGRLDIMVNNAGIapeaSEPRPV 404
                 6789************************9777777888888888888889*****************************************99999*** PP

                 GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH.......HCTTEEEEEEEEGGGTSB-TTBH CS
   adh_short  94 selseeewervievNltgvflltravlpaml.......kqssGrIvnvsSvagkvpvagva 147
                  e++ee++++v  vN+ gvfl ++    +m+        +++G+I+n++Sv g  ++ag++
  KKY21331.1 405 WETTEEDFDSVCRVNIRGVFLGCKYGGAQMIkqarnpqCNRAGTIINMASVLGVLGLAGTP 465
                 *******************************77766666789***********99998876 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   1.3   4.5e-22   5.8e-19       1      87 [.     108     195 ..     108     196 .. 0.98
   2 ?   -2.7   0.0       4.1   5.2e+03      59      88 ..     211     239 ..     203     257 .. 0.76
   3 ?   -2.0   0.0       2.5   3.2e+03      79      89 ..     326     335 ..     295     394 .. 0.66

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 4.5e-22
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvv 87 
                 +vGlaa+ +AkalG+  ++avd+ +ekl+la +lGa +++n+k   dl++ i++++ ++gvd +++++G+ + l+a++k+l++ G+l++
  KKY21331.1 108 AVGLAAMLAAKALGVrDIVAVDIVDEKLQLASDLGASHTVNTKAVpDLNSGIRAIF-PDGVDQIVDTTGVATLLQASIKALAHEGTLAL 195
                 69******************************************************.99***************************985 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.1
                 EEEEEESSCSHHHHHHHHHCEEEEEEEEEC CS
  ADH_zinc_N  59 vdvvfecvGsgatleaalkllkpgGrlvvv 88 
                 +d +  c    ++l++a+++lk g +lv+ 
  KKY21331.1 211 IDRISKCYP-AECLPEAIEYLKSGRTLVML 239
                 566666777.88999999999999999876 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.5
                 EEEEEEEEECS CS
  ADH_zinc_N  79 lkpgGrlvvvG 89 
                 +++g  +vv++
  KKY21331.1 326 VRHGA-MVVCA 335
                 33333.33333 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1     5e-07   0.00064       1      50 [.     141     194 ..     141     199 .. 0.93
   2 !   11.6   0.0   0.00035      0.44      92     127 ..     199     235 ..     194     236 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5e-07
                   TT-SEEEETT.STTHH...HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEE CS
  ADH_zinc_N_2   1 lGAdevidyr.tedfe...aatggegvDvvldtvggealleaslkvlpggGrlv 50 
                   lGA + ++ +  +d+    +a+ ++gvD ++dt+g ++ll+as+k+l+++G+l 
    KKY21331.1 141 LGASHTVNTKaVPDLNsgiRAIFPDGVDQIVDTTGVATLLQASIKALAHEGTLA 194
                   8******999999999***999*************99**********999*985 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00035
                   HHHHHHHHHH---.-EEEEEEGGGHHHHHHHHHSS-- CS
  ADH_zinc_N_2  92 elaalieeGklrp.vvdrvfpleeaaeAhrylesgra 127
                   +l +l+++Gk+ + ++++ +p e ++eA++yl+sgr+
    KKY21331.1 199 QLIQLYQAGKFPIdRISKCYPAECLPEAIEYLKSGRT 235
                   7999*****9987356666*****************8 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   6.1e-11   7.8e-08       4     116 ..     309     423 ..     307     465 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 6.1e-11
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE-----....----TT CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvl....rdklle 98 
                 +itG+  gLG+++a + +++ga  +v+++ +aa+ ++++ + + ++++g +  + + Dv +++++++l+++  +e++++   ++ Ag++    + +++ 
  KKY21331.1 309 VITGASSGLGRAIALTFVRHGA--MVVCAHQAASARHEQPTHELIRQSGGKSIFKPTDVGNAESMQSLVQSTVKEFGRLDIMVNNAGIApeasEPRPVW 405
                 8********************9..5777888666666666777778889999***********************************97222256799* PP

                 T--HHHHHHHHTTTTHHH CS
          KR  99 emtaedleqvlapKvkGa 116
                 e+t+ed+++v +  ++G+
  KKY21331.1 406 ETTEEDFDSVCRVNIRGV 423
                 *********988766664 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.8   4.8e-08   6.1e-05      34     130 ..     101     196 ..      93     207 .. 0.81
   2 ?   -3.1   0.0       3.6   4.6e+03      65      83 ..     340     358 ..     306     398 .. 0.55

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 4.8e-08
  Glu_dehyd_C  34 alvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYvdsretpvdeipeas.....eemdlvvEaTGsakhafeaiealapnGv 126
                    v+G G++GL a  +l+a+  g+ ++  ++     d +++l ++lGa     +++ v+++++         +d +v++TG a  + ++i+ala +G 
   KKY21331.1 101 LAVVGMGAVGLAA--MLAAKALGVRDIVAVDI---VDEKLQLASDLGASHTV-NTKAVPDLNSGIraifpDGVDQIVDTTGVATLLQASIKALAHEGT 192
                  4799******988..88888889988877775...6779*********9764.57777777654311112579************************* PP

  Glu_dehyd_C 127 aaLl 130
                   aLl
   KKY21331.1 193 LALL 196
                  9997 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.6
  Glu_dehyd_C  65 rrdrpdptidlveelGatY 83 
                     +++pt +l+++ G+  
   KKY21331.1 340 SARHEQPTHELIRQSGGKS 358
                  3345567777777666544 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.6   1.1e-05     0.015      17      73 ..      87     144 ..      74     186 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.1e-05
                  EETTCEETCB---EEEEESTSHHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTTC CS
  AlaDh_PNT_C  17 gtlaGgvpgvepakvlviGgGvaGlqAiatakglga.kVtvlDvrparleqleslgak 73 
                  gt++  ++  + +k  v+G G +Gl+A+ +ak+lg  +++++D+  ++l+  ++lga+
   KKY21331.1  87 GTILNILRPQTVSKLAVVGMGAVGLAAMLAAKALGVrDIVAVDIVDEKLQLASDLGAS 144
                  4444444445668999*******************637999***99999999998887 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.6    0.0054       6.9       1      82 [.     105     189 ..     105     195 .. 0.87
   2 ?    6.3   0.0     0.011        15      60     109 ..     306     353 ..     275     361 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0054
                    --SHHHHHHHHHHHH---SSEEEEEEEEESS.EEE-TTHHHHHT--CB---HHHHHHHH..S.-EEEEE-S--HHHHTTHHHHHHT CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqseielelvavadrd.sllskdrkallasealtldlddliahl..d.pdvvVEcasseavaelvlkaLka 82 
                    G+Ga+G a + + k+   + ++  v ++d++ +l+s+  ++ + +++ + dl + i+ +  d +d +V+ ++++ + +   kaL++
     KKY21331.1 105 GMGAVGLAAMLAAKALGVR-DIVAVDIVDEKlQLASDLGASHTVNTKAVPDLNSGIRAIfpDgVDQIVDTTGVATLLQASIKALAH 189
                    8899997777777777775.999********99999999999999999999999999889955********************998 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.011
                    -EEEEE-S--HHHHTTHHHHHHTTEEEE-S--CGGG.-HHHHHHHTSSSTT CS
  NAD_binding_3  60 pdvvVEcasseavaelvlkaLkagkdvvtankgala.dealyeeLreaaea 109
                       v+  ass   + ++l ++++g  vv a  +a a  e+ ++e   + ++
     KKY21331.1 306 KVSVITGASSGLGRAIALTFVRHGAMVVCAHQAASArHEQPTHE---LIRQ 353
                    4445566999999***********************54444444...4444 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.4e-05     0.043      30      71 ..     299     340 ..     293     356 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.4e-05
                    CT---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSC CS
  THF_DHG_CYH_C  30 tgielegkkvvvvGrsnivgkplallLleknatVtvchsktk 71 
                     +  l+gk  v+ G+s+ +g+++al + +++a+V ++h++++
     KKY21331.1 299 LTRLLAGKVSVITGASSGLGRAIALTFVRHGAMVVCAHQAAS 340
                    5556899*******************************9875 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   4.2e-05     0.053      19      93 ..     306     395 ..     300     398 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.2e-05
                 TTEEEEE----HHHHHHHHHHHHTT-EEEEEE-S-SS--.............-TT-EEEE--SHHHHHHHHHHHHTT-...SEEEE---S- CS
         DFP  19 pVRfisNrSSGkmGyalAeaaaarGaeVtlvsgpvslet.............pegvevvkvesaeemleaveealkea...divimaAAva 93 
                 +V +i+  SSG  G a+A  +++ Ga V   +   s ++             ++ ++ ++v +ae+m++ v++++ke    di++  A +a
  KKY21331.1 306 KVSVITGASSG-LGRAIALTFVRHGAMVVCAHQAASARHeqpthelirqsggKSIFKPTDVGNAESMQSLVQSTVKEFgrlDIMVNNAGIA 395
                 5889*******.6*****************9987543322233445544432223478899999999999998887666669999999886 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00013      0.16      37      74 ..      99     137 ..      92     152 .. 0.82
   2 ?   -0.2   0.0      0.42   5.4e+02      28      73 ..     297     343 ..     281     365 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
                   SEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHHC CS
  2-Hacid_dh_C  37 ktvGiiGlGrIGqavakrlkafgm.kviaydrskkkeee 74 
                   ++++++G+G++G a++  +ka+g+ +++a+d   +k + 
    KKY21331.1  99 SKLAVVGMGAVGLAAMLAAKALGVrDIVAVDIVDEKLQL 137
                   6899********************889999988776554 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.42
                   CGSBS-GTTSEEEEES-SH.HHHHHHHHHHHTT-EEEEESSSHHHHH CS
  2-Hacid_dh_C  28 allgkelsgktvGiiGlGr.IGqavakrlkafgmkviaydrskkkee 73 
                   + l + l+gk   i G+ + +G+a+a ++   g+ v++  +  ++++
    KKY21331.1 297 NKLTRLLAGKVSVITGASSgLGRAIALTFVRHGAMVVCAHQAASARH 343
                   455667889999999986449******99999998888777766555 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.6   0.00013      0.17       2      37 ..     100     136 ..      99     147 .. 0.90
   2 ?   -2.0   0.0       1.8   2.3e+03      31      59 ..     147     175 ..     143     187 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
                     EEEEE--STTHHHHHHHHHHCT.SEEEEE-S-HHHHH CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeig.hevigvDideekvd 37 
                     k++v+G+G vGl  +++  ++g  +++ vDi +ek +
      KKY21331.1 100 KLAVVGMGAVGLAAMLAAKALGvRDIVAVDIVDEKLQ 136
                     789*********9999999999899******999976 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.8
                     S-HHHHHHHCTTS-SS--TTHHHHHHHHC CS
  UDPG_MGDP_dh_N  31 ideekvdklnsgkipiyepgLeelvkkav 59 
                     +++++v  lnsg   i+  g +++v +  
      KKY21331.1 147 VNTKAVPDLNSGIRAIFPDGVDQIVDTTG 175
                     58899999************999998765 PP

>> Bacillus_PapR  Bacillus PapR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4   7.4e-05     0.094      12      44 ..     112     144 ..     105     145 .. 0.90
   2 ?   -2.3   0.1       3.4   4.4e+03      12      29 ..     307     324 ..     304     326 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.4e-05
  Bacillus_PapR  12 vamLaGvaFGvGqDqaLtnqqeevqLasDLPFe 44 
                     amLa  a Gv    a+    e  qLasDL   
     KKY21331.1 112 AAMLAAKALGVRDIVAVDIVDEKLQLASDLGAS 144
                    49***************************9765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.4
  Bacillus_PapR  12 vamLaGvaFGvGqDqaLt 29 
                    v ++ G   G G   aLt
     KKY21331.1 307 VSVITGASSGLGRAIALT 324
                    678899999***999998 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.9   0.00065      0.83      19      49 ..      99     129 ..      83     135 .. 0.87
   2 ?   -0.3   0.0      0.42   5.4e+02     136     198 ..     403     461 ..     305     470 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00065
                 SEEEEE--SHHHHHHHHHHHHHTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  19 skvllvGaGglGsellknLalsGvgkltlvD 49 
                 sk ++vG+G++G  ++ +  ++Gv+ +  vD
  KKY21331.1  99 SKLAVVGMGAVGLAAMLAAKALGVRDIVAVD 129
                 899**********************887776 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.42
                 EEEEEEEETTEEEEEEEEECCS-ECTSS-TGGS.EECCCCEEHHHHHHCTE-B-HHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 136 plieagtlgfegqvvviipgktgcyeCldpsstedptekkvplctsiagnipaiatttavvag 198
                 p+ e++ + f++ ++v i  +   + C +    ++ +++  p c   ag i  +a++++v+++
  KKY21331.1 403 PVWETTEEDFDSVCRVNI--RGVFLGCKYG-GAQMIKQARNPQC-NRAGTIINMASVLGVLGL 461
                 667778888888888887..6777888874.7777788888888.888888889988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.53
# Mc/sec: 3037.22
//
Query:       KKY21332.1  [L=154]
Description: putative beta-lactamase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-10   41.2   0.0    1.6e-10   40.7   0.0    1.2  1  Beta-lactamase   Beta-lactamase
  ------ inclusion threshold ------
      0.053   13.1   0.0      0.072   12.7   0.0    1.2  1  Beta-lactamase2  Beta-lactamase enzyme family
       0.15   11.4   0.0       0.18   11.2   0.0    1.1  1  Peptidase_S11    D-alanyl-D-alanine carboxypeptidase


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   2.7e-14   1.6e-10       4     103 ..      22     146 ..      20     149 .. 0.76

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 2.7e-14
                     HHHHHHHHTTESEEEEEEEETTEEEEEEEE...........EE...EETTTTEEEST.TSBEEEGGGHHHHHHHHHHHHHHTTSSCTTS..BGGG CS
  Beta-lactamase   4 lvrelmaqggipGvavavvrdgkvvldkgg...........Gv...adleggrpvta.dtlfriaSvtKtftaaavlqlveeGkldLdd..pVsk 81 
                     + +e+++   +p ++v+v+ +g+  ++  +           G     d ++g+ v++ +  + +aS tK++ta+a +qlve+Gkl Ldd   V+ 
      KKY21332.1  22 CADEYVG---LPCASVVVIGKGQDCAAELFshaarskavshGInldLDSDKGEEVSEeEDTYWLASSTKLITAIACMQLVEQGKLGLDDadQVEN 113
                     5667777...899999999999988777777777777776633445455555555555455779***********************97336877 PP

                     TST...........TCTTGGGTTEBHHHHHTTH CS
  Beta-lactamase  82 ylP...........efagpgkgkiTlrdLltHt 103
                       P               +  ++iTlr+LltHt
      KKY21332.1 114 LCPelrdvevlqenGILVEKQRRITLRMLLTHT 146
                     77788888888888667778888*********9 PP

>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.2e-05     0.072       4      47 ..      70     112 ..      67     149 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.2e-05
                      TSEEEESTTS-EE-GGGGHHHHHHHHHHHHHCTSTGTT-EEEGG CS
  Beta-lactamase2   4 geelgvnadeefpaaStiKvpillalleavlegklslderltlt 47 
                      gee++  +++++ +aS  K+  ++a ++ v++gkl ld+  +++
       KKY21332.1  70 GEEVSE-EEDTYWLASSTKLITAIACMQLVEQGKLGLDDADQVE 112
                      666654.45556688888*******************9976655 PP

>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.1e-05      0.18      20      94 ..      64     140 ..      46     146 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.1e-05
                    ETTTTEEEEEESTTS-BE-GGGHHHHHHHHHHHHHHTTSS-TTSEEE--GGGHGCCS..GTTSSTTS-TTT-EEEHH CS
  Peptidase_S11  20 dantGkvLyeknadevveiASltKlmTaylvlealkkgklkeddkvtisedayalgn..nkevsniflkkgskvsvk 94 
                    d+++ k     +++     AS tKl+Ta+  ++ +++gkl +dd  ++ +   +l +    +   i ++k+++++++
     KKY21332.1  64 DLDSDKGEEVSEEEDTYWLASSTKLITAIACMQLVEQGKLGLDDADQVENLCPELRDveVLQENGILVEKQRRITLR 140
                    5555555555566677789*********************9999888877666655422233334555555566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1005.60
//
Query:       KKY21333.1  [L=552]
Description: hypothetical protein UCRPC4_g03769 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-73  246.7   0.0      5e-73  246.3   0.0    1.1  1  FAD_binding_3   FAD binding domain
    2.6e-23   82.9   0.0    2.7e-14   53.5   0.0    2.5  2  Phe_hydrox_dim  Phenol hydroxylase, C-terminal dimerisation d
  ------ inclusion threshold ------
      0.011   14.9   0.0      0.054   12.6   0.0    2.0  3  FAD_binding_2   FAD binding domain
      0.013   14.6   0.0       0.16   11.0   0.0    2.1  2  SE              Squalene epoxidase
      0.044   13.0   0.0      0.081   12.1   0.0    1.4  1  Thi4            Thi4 family
      0.061   12.7   0.0      0.092   12.1   0.0    1.2  1  FAD_oxidored    FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.3   0.0   1.7e-76     5e-73       2     348 ..       5     361 ..       4     362 .. 0.86

  Alignments for each domain:
  == domain 1  score: 246.3 bits;  conditional E-value: 1.7e-76
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE.....CCCCCEEEEEHHC CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealyne.....lsdtpkaradlel 92 
                    +dVlI G+G aGl +a   s++G++  ++ekrs   ++++adg+++rt+e++++ Gl + +l+e+   ++ ++a++++     +++t +   dle 
     KKY21333.1   5 VDVLICGSGSAGLCAAVWFSRYGIQYKMLEKRSGPLENGQADGVQCRTVEIFESFGLSEDLLKEA--YHVLEIAFWASnghggIRRT-HYAPDLEP 97 
                    89***************************************************************..77778888888444433333.55566776 PP

                    HHCST-CEE--HHHHHHHHHHHHHHH.T.EEETCSEEEECCEECCCCCCCEEE......ECCTTEEEEEEEEEEE....E--GTT-HHHHHHTGGE CS
  FAD_binding_3  93 esspervtvypqteleriLvehaeer.g.lqvrfktevesleqdeegvtaevr......dketgeeetvrakYlv....GaDGgrStvrktlgief 176
                      s++   +++q +++ +++e+ ++  g l+++ + ev+ ++ d    t  +         ++g+e+  ++kY+     ++DG++S+vr++lg+++
     KKY21333.1  98 GLSHQPHVILNQARINGLMIEEIQRSsGgLDIDYSVEVKDVRVDSAAATDPAAygvtttVVSNGKEKIYHSKYVLvsleACDGAHSAVRRSLGLKM 193
                    6999****************997654247********77666665544322221333346777889889****9778889**************** PP

                    EEEEEEEEEEEEEEEEEC-SCCCTTCCEEEEECCTTEEEEEECCE.TEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEE.EEEEEEE CS
  FAD_binding_3 177 egeetvyeagvldvlfdadlsdiveplvlilsaesrgvmviPlen.tlerfyvqvearaekeersekfteeevkarlreivgektldv.eieevsa 270
                    +g +t   +gv+d+ +++d++di+++  +il+++ + +m+iP+e   l+rfyv ++  +     +++ +   + +r+r+i+ ++ l+v e  + s+
     KKY21333.1 194 IGDSTNSLWGVIDLFPRTDFPDIRKK--AILHSDAGNLMIIPREGdYLVRFYVELQGLT-----EKDANLITLQERARQIFSPYSLEVaETVWWSV 282
                    **************************..7777777778*******77777777776665.....455566678899************9******* PP

                    EEEEEEEESSSEET.TEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 271 wtvaqrvaekyrkg.rvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvdf 348
                    + ++qrva+ +++  rvfl GDA+H+h+P++GqG+N+++qD +n++wkLaavl+ +A +++LdtY +er+  a+++++f
     KKY21333.1 283 YSIGQRVADFFTQHnRVFLTGDACHTHSPKAGQGMNVSLQDGYNIGWKLAAVLRSQALPTILDTYVSERQGTAADLIEF 361
                    **********98766***********************************************************99987 PP

>> Phe_hydrox_dim  Phenol hydroxylase, C-terminal dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0     9e-10   2.7e-06       1      41 [.     394     434 ..     394     441 .. 0.94
   2 !   53.5   0.0     9e-18   2.7e-14      90     166 .]     439     517 ..     433     517 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 9e-10
  Phe_hydrox_dim   1 FtsGvgveYqpsllvaevkskqnlatglrpGrrlpsakVvr 41 
                     +t+G g++Y++sllva+  ++q+l tgl +G+r+ps++V+ 
      KKY21333.1 394 YTAGQGIKYNKSLLVASPPDSQSLGTGLVVGMRFPSVEVLS 434
                     89**************99********************986 PP

  == domain 2  score: 53.5 bits;  conditional E-value: 9e-18
  Phe_hydrox_dim  90 sflsrftpadadvdsvievllihaaprkeieledlPevlrpfdeklgl.dyekvyvddesyhe.dgaaYekyGidkkrG 166
                     +++s+ftp+++dvdsvi+ +l+ +++r+e+e e++P v+ p+++kl++ + ++v+vd++  ++ +g aY++yGid k+G
      KKY21333.1 439 NMVSEFTPKSQDVDSVIQAILVLSSRRTELEQEQIPGVFTPVTGKLRIkRLQNVFVDNDGGNSkHGYAYDIYGIDSKQG 517
                     6799********************************************666*******995553799********9998 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.8e-05     0.054       1      30 [.       6      35 ..       6      39 .. 0.84
   2 ?   -1.6   0.0      0.36   1.1e+03     172     195 ..     143     171 ..      97     200 .. 0.56
   3 ?   -2.5   0.0      0.69   2.1e+03     219     260 ..     172     212 ..     160     230 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.8e-05
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEES CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvek 30
                   Dv+++GsG AGL+AA+  ++ G +  ++ek
     KKY21333.1  6 DVLICGSGSAGLCAAVWFSRYGIQYKMLEK 35
                   9**************988888777666665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.36
                    T........EEEEEEEEETTTTCEEEEEESEE CS
  FAD_binding_2 172 g........rvtGavvenpesgrevrirakav 195
                             +vt+ vv+   +g+e  +++k v
     KKY21333.1 143 AaatdpaayGVTTTVVS---NGKEKIYHSKYV 171
                    22333333333333333...444444444444 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.69
                    BSSGTT-S-HHHHHHHCTTSS.EES..TT-EEEEEEEET.... CS
  FAD_binding_2 219 ttnapavtGdglalalragaa.lnddrmeevqfhPtslvpird 260
                     ++++a++G   a+  + g++ ++d    +  +++  l+p+ d
     KKY21333.1 172 LVSLEACDGAHSAVRRSLGLKmIGD--STNSLWGVIDLFPRTD 212
                    567889**************98877..7777777777776555 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.056   1.7e+02       7      20 ..     177     190 ..     175     231 .. 0.85
   2 ?   11.0   0.0   5.3e-05      0.16     128     221 ..     295     385 ..     286     407 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.056
          SE   7 vcDGifsklRkels 20 
                  cDG +s +R++l 
  KKY21333.1 177 ACDGAHSAVRRSLG 190
                 5**********996 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 5.3e-05
          SE 128 ekkGlillGDalnmRHPltggGmtvalnDivllskllkpledlsdeekvleelksfyvkRkeldavvnvLsialyslfaadsdelkalrkgCfd 221
                 +++ + l GDa     P  g Gm v l+D + +   l  +     ++++   l+++  +R+ ++a +      + +lf+++ +e +++ +  f+
  KKY21333.1 295 QHNRVFLTGDACHTHSPKAGQGMNVSLQDGYNIGWKLAAV---LRSQALPTILDTYVSERQGTAADLIEFDRMFTKLFSSSYREEHQITSDYFK 385
                 55668999*********************99998888888...567889999999999999999988899999999999999999988877764 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.7e-05     0.081      18      50 ..       5      36 ..       1      52 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.7e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailers 50
                 Dv+i G+Gs+GL aa  +++  +++  +le++
  KKY21333.1  5 VDVLICGSGSAGLCAAVWFSRY-GIQYKMLEKR 36
                7*******************99.9999999987 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.1e-05     0.092       1      31 [.       6      36 ..       6      38 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.1e-05
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveer 31
                  Dv+++G+g+aG++AA+   r G +  ++e+r
    KKY21333.1  6 DVLICGSGSAGLCAAVWFSRYGIQYKMLEKR 36
                  9****************99999988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.47
# Mc/sec: 3543.06
//
Query:       KKY21334.1  [L=550]
Description: putative general amidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.7e-107  359.1   0.0   5.1e-107  358.6   0.0    1.2  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.6   0.0  2.9e-111  5.1e-107       1     451 []      77     536 ..      77     536 .. 0.92

  Alignments for each domain:
  == domain 1  score: 358.6 bits;  conditional E-value: 2.9e-111
                 HHHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE CS
     Amidase   1 elveaflkrieavneklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgkT 99 
                 ++++a++kr+  +++ +n+l ++ i++al+qA +ld++ +++ + gpLhG+Pis+KD++dv g +  +G  ++ ++++++Da +v+ L++aGavi+ +T
  KKY21334.1  77 DVTSAYCKRAMIAHQLTNCLSEFWIKDALSQAHQLDESLRKTGPVGPLHGLPISLKDQFDVGGKENNMGLATWLGRISDEDASLVKILRAAGAVIYTRT 175
                 699************************************************************************************************ PP

                 --SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB-....-SSTTT-EEEEEE CS
     Amidase 100 nmdefamgsstensvfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvv....alessldvvGpla 194
                 n++ ++m  +t n v+g+t+NP++++ t+GGSSGG+AA++A +++pl++GtD GGSiR PA++++l+Gl+Pt  r+++ g      ++es+ ++ Gp+a
  KKY21334.1 176 NVPMTLMMPETVNHVYGRTVNPRNRTLTSGGSSGGEAALLALKGSPLGVGTDLGGSIRNPAALNNLYGLRPTMRRLPYLGASntllGQESIESSLGPIA 274
                 *********************************************************************************99**************** PP

                 SSHHHHHHHHHHHBS--TT-TTS----...HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHHHHHH CS
     Amidase 195 rsvedlalllrvilgedpkdstssvip...eesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelpsleealslyyl 290
                 rs+  +  ++++i+   p+d++ +v+    +e+  + ++l+ + ++l  G++  dgv++++p+v+ra++ +++aL++aGh+v+e+ + +++eals++ +
  KKY21334.1 275 RSLAACSTFFKAIIDGAPWDYDPKVVEikwREDMYQLKQLGGKGSKLCFGYYDYDGVVMPQPPVRRAIALTVEALKRAGHTVIEFPPLNHAEALSILQR 373
                 ************************988999999999999************************************************************ PP

                 HHHHHHHHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCCBSEEEEESSSSS--BC CS
     Amidase 291 ilvaeassnlarylgvryerlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafeelDvllsPtaptpaprl 389
                   +++ +++++r  g          +++ llp     ++ +  k   +  n a + + +++++++ + + +l ++++ +  + +D l++P+ap p+p++
  KKY21334.1 374 TFASDNGEEFKRLFGE---------SKEPLLP-----GIDDVSKFPPITVNEAWQLNLERDAFRRRYLDAWLATKQVSGTGRPIDGLICPVAPFPPPPH 458
                 *******998877666.........3344444.....3333333333333333333333445999999999*********999**************** PP

                 CCCCHHHCSHHHHHGCCTTT...HHHHHTT--EEE.....EECCCCT..............TECEEEEEEESTT-HHHHH CS
     Amidase 390 gekdktidsytvlynlldftavvvpvnlaglpals.....vpagksed.............glPvGvqvigkafqeetlL 451
                 g+  ++   yt+++n+ld++++vvpv++++   +      +p ++ ++             ++PvGvq++g++++ee++L
  KKY21334.1 459 GQYIYA--GYTCVFNVLDMPSAVVPVTFVDASVDLpdrayIPKNELDKavhemydspdtfkDAPVGVQIVGRRWREEEVL 536
                 *99885..5********************9988865555655555555999***************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3775.25
//
Query:       KKY21335.1  [L=346]
Description: putative nad dependent epimerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-14   52.5   0.0    1.1e-13   51.2   0.0    1.5  1  Epimerase        NAD dependent epimerase/dehydratase family
    2.4e-11   43.2   0.0      8e-11   41.4   0.0    1.8  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    1.4e-07   31.3   0.0    1.2e-06   28.3   0.0    1.9  2  NmrA             NmrA-like family
    3.3e-07   30.4   0.0      5e-07   29.8   0.0    1.2  1  NAD_binding_10   NAD(P)H-binding
    2.5e-06   26.8   0.0    0.00074   18.8   0.0    2.3  2  NAD_binding_4    Male sterility protein
    0.00034   20.1   0.0    0.00055   19.4   0.0    1.3  1  adh_short        short chain dehydrogenase
     0.0029   17.1   0.0        0.4   10.0   0.0    2.2  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
  ------ inclusion threshold ------
      0.049   14.2   0.0      0.082   13.5   0.0    1.4  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
      0.059   12.5   0.1       0.09   11.9   0.1    1.5  1  RmlD_sub_bind    RmlD substrate binding domain
      0.064   12.4   0.3        6.9    5.7   0.1    2.2  2  Polysacc_synt_2  Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   6.2e-17   1.1e-13       1     232 [.       8     265 ..       8     273 .. 0.79

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 6.2e-17
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC....EEEE--TT-HHHHHHHHHHH..T-SEEEE--S---HHHHHHSHHHHHHHHTH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl....elveldltdrsalerlfkee..qpdavihlAavggvaassedpadfieknlq 93 
                 ilVtGatG +G+a+v +++++g +v g +r  s+ ++++ +      e+v++   +++  e + +e   ++da ih+A+   +  ++++ ++++   l+
  KKY21335.1   8 ILVTGATGIVGTAIVLEIAKAGFKVRGSTRSASKAEQWSAKYPdvgiEWVYVQDQKADPSEGIYDEAvvGCDAAIHVAG--PYTLTHKSGEEIMVPQLN 104
                 8******************************88877776665589998888888888888999988778********55..66667788999******* PP

                 HHHHHHHHHHHH.TCTEEEEEEEGGGGT..................SCSSSS...BSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT..-EEEEEE CS
   Epimerase  94 gtlnlleaarka.gvkrllflsSsevYG..................kdaeqp...keettltgplkpnspYaaaKlageklveayaaqyg..lnaiilr 168
                 g   +l+a++k   +krl++ s+++                     +    p   ++ ++ +g+  p + Y + K+++ek+++++  +++  ++ ++l 
  KKY21335.1 105 GIKSILSACHKEkSIKRLVYTSTVAAINpdphlglspaeqraytedD--WNPttwEKGSSSSGQHMPVTSYCCGKTLAEKYAWEFMSSNQpsFDLVALC 201
                 **********887899*******777766889999888888765431..23455555555577779********************99955599***** PP

                 ESEEESTTS-TTSTTSHHHHHHHHHHTTS..SSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT- CS
   Epimerase 169 lfnlyGprngegevsrvipalirkilegk..qevtllgdgtalRdflyveDvaeaillvlehvdag 232
                 + + yGp  +  +  + + a+ +++ +     + t+ gd  +   f  v D ae++l +l+ ++a 
  KKY21335.1 202 PATGYGPPLQVLHSLHNLDAASARLWSHIthAQTTIPGD--PSPVFTNVYDTAEMHLNALTWPSAA 265
                 ********4444444444544444444222235788765..555799999********99998764 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   4.5e-14     8e-11       1     123 [.       9     134 ..       9     234 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 4.5e-14
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlD..lrespelleelskvnvkkviegDvt.dkdk..leealegvdvvihlaslvdvagkltedeimkvnvk 94 
                 +vtG++G +G a+v e+ +++   +vr       + ++++ +   v+++ v   D + d ++   +ea+ g d+ ih+a+   ++ k + +eim   ++
  KKY21335.1   9 LVTGATGIVGTAIVLEIAKAGF--KVRGSTrsASKAEQWSAKYPDVGIEWVYVQDQKaDPSEgiYDEAVVGCDAAIHVAGPYTLTHK-SGEEIMVPQLN 104
                 69******************95..666544226677788889999999984444544144334379**************9999985.5566******* PP

   3Beta_HSD  95 GTrnvleacvk.agvrvlvYtSsaevvgpn 123
                 G +++l+ac k +++++lvYtS++ ++ p+
  KKY21335.1 105 GIKSILSACHKeKSIKRLVYTSTVAAINPD 134
                 *********76279************9984 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   6.5e-10   1.2e-06       1     103 [.       8     128 ..       8     136 .. 0.81
   2 ?    0.6   0.0      0.19   3.4e+02     170     222 ..     236     286 ..     225     292 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 6.5e-10
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S..-SHHHHHHHHSTTEEE.ES-TT...-HHHHHHHHTT-SEEEE---GG...........S-HHHHH CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdt..kselakslkeaGvelv.kgdld...dkeslvealkgvdvvfsvtgfy...........skeiedg 82 
                 Ilv+GaTG  G ++v  ++kag+kvr  +R     ++ +++  + G e v  +d +   ++ + +ea+ g d+++ v g y             +++  
  KKY21335.1   8 ILVTGATGIVGTAIVLEIAKAGFKVRGSTRSAskAEQWSAKYPDVGIEWVyVQDQKadpSEGIYDEAVVGCDAAIHVAGPYtlthksgeeimVPQLNGI 106
                 9******************************965556688999*****99966654344556789************9999999999544433344445 PP

                 HHHHHHHHHHS.-SEEEEEE-- CS
        NmrA  83 kklvdAakeaG.vkhfiySslg 103
                 k + +A  + + +k+++y s +
  KKY21335.1 107 KSILSACHKEKsIKRLVYTSTV 128
                 778899988889***9998865 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.19
                 EESS-TTS-EE-HHHHHHHHHHHHHHHHHHHTTEEEEE-SEEE-HHHHHHHHH CS
        NmrA 170 lgpgnpkavlldaeeDiGafvikilkdprklkgkriklagntlsgneivelfe 222
                   pg+p+ v+  ++ D++++ +++l  p++  gkr ++ +  +s+  i ++++
  KKY21335.1 236 TIPGDPSPVFT-NVYDTAEMHLNALTWPSA-AGKRFQIVSGSYSYARIFSILK 286
                 56788878998.9************99987.5888888888888888888776 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   2.8e-10     5e-07       1     103 [.      12     132 ..      12     156 .. 0.72

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 2.8e-10
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCT...TTCEEEE--TT..-CCH..HHHHHTT-SEEEES-.......--TCC.......H CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleae...eglevvegdvt..dved..laealkgadaVvsal.......ggggk.......d 74 
                     GAtG vG ++v e++++ g++v+  +R+++k+++ +a+    g+e v ++ +  d+++    ea+ g+da +  +           +       +
      KKY21335.1  12 GATGIVGTAIVLEIAKA-GFKVRGSTRSASKAEQWSAKypdVGIEWVYVQDQkaDPSEgiYDEAVVGCDAAIHVAgpytlthK---SgeeimvpQ 102
                     9****************.5*************987644322678887765551233334489*******87766636654431...122345444 PP

                     HHHHHHHHHHHHH.CT--EEEEEEETTTTS CS
  NAD_binding_10  75 eegaknivdaake.agvkRfvlvsaigvgd 103
                      +g k+i+ a+ + + +kR+v+ s++ + +
      KKY21335.1 103 LNGIKSILSACHKeKSIKRLVYTSTVAAIN 132
                     445********76266********988764 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0039         7       1      18 [.      10      27 ..      10      45 .. 0.84
   2 !   18.8   0.0   4.1e-07   0.00074      81     191 ..      71     188 ..      65     195 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0039
                   EE-TTSHHHHHHHHHHHH CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLr 18
                   +TGaTG +G+ ++ ++ +
     KKY21335.1 10 VTGATGIVGTAIVLEIAK 27
                   7************99876 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 4.1e-07
                    HHHHHHH--EEEE--SS-S.STTS.SEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE.GGGTTS-TTT--SSS-H............HHH--EEEE CS
  NAD_binding_4  81 lqelaeevdviihsaAtvnfdepy.kellrvNveGtrevlelakklkklkvllhvST.ayvngeregeveekvyeege......keekldederak 168
                    ++e +  +d+ ih+a+ ++++++  +e++ + ++G++ +l+ ++k k+ k l++ ST a++n++ +  ++    e+        ++ + ++ + ++
     KKY21335.1  71 YDEAVVGCDAAIHVAGPYTLTHKSgEEIMVPQLNGIKSILSACHKEKSIKRLVYTSTvAAINPDPHLGLSPA--EQRAyteddwNPTTWEKGSSSS 164
                    566667799**********998651669999***************************99999987655322..1111334446555555555555 PP

                    TTTCCC.HHHHHHHHHHHHHHHHH CS
  NAD_binding_4 169 lkglpn.tYeqsKalaEklvrear 191
                    ++ +p   Y   K laEk   e +
     KKY21335.1 165 GQHMPVtSYCCGKTLAEKYAWEFM 188
                    555554489999999999887766 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.1e-07   0.00055       3      55 ..       8      60 ..       6      73 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.1e-07
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiq 55
                +lvtGa++ +G ai+ e+ak+G+kv    rs++k+e++ ++  + g + +++q
  KKY21335.1  8 ILVTGATGIVGTAIVLEIAKAGFKVRGSTRSASKAEQWSAKYPDVGIEWVYVQ 60
                89*****999*****************************99998887777776 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00023       0.4       1      36 [.       9      44 ..       9     128 .. 0.84
   2 !    5.1   0.0    0.0073        13     307     329 ..     311     332 ..     307     335 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00023
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TT CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfnt 36
                   L+TG +G +G  ++  + + g++v g +r +s+ + 
     KKY21335.1  9 LVTGATGIVGTAIVLEIAKAGFKVRGSTRSASKAEQ 44
                   9*************************9988887553 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0073
                    -B-THHHHHHH----SS-HHHHH CS
  GDP_Man_Dehyd 307 lgdaskakeeLgWkpkvsfeelv 329
                     +d+++ak+eLg++p+ s+ee+v
     KKY21335.1 311 TADCTRAKRELGFRPR-SLEETV 332
                    68*************9.666655 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.6e-05     0.082       6      48 ..      13      57 ..       7     106 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.6e-05
                   TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC......- CS
  F420_oxidored  6 GaGnmgealasgllaagaqpheivvansrnpekaeelaeelg......v 48
                   ++G +g a+++ +++ag    +++ +++r+ +kae++ +++       v
     KKY21335.1 13 ATGIVGTAIVLEIAKAG---FKVR-GSTRSASKAEQWSAKYPdvgiewV 57
                   589**************...****.99************9986555441 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1     5e-05      0.09       2      34 ..       7      39 ..       6     151 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5e-05
                   EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TTT CS
  RmlD_sub_bind  2 kilvtGanGqlGseLakqlaeeglevlaltree 34
                   kilvtGa+G +G++++ ++a++g++v + tr++
     KKY21335.1  7 KILVTGATGIVGTAIVLEIAKAGFKVRGSTRSA 39
                   79************************9999884 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1    0.0039       6.9       1      21 [.       8      28 ..       8      46 .. 0.91
   2 ?    4.7   0.0     0.008        14     104     141 ..     102     140 ..      71     150 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0039
                     EEEETTTSHHHHHHHHHHHHH CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilkk 21
                     +lvtGa+G +G ++v +i+k 
       KKY21335.1  8 ILVTGATGIVGTAIVLEIAKA 28
                     89*************999986 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.008
                      HHHHHHHHHHHHHH.TT-SEEEEEEEGGGSS--SHHHHH CS
  Polysacc_synt_2 104 Nvlgtenvieaaie.agvkkvvliStDKAvnPtnvmGat 141
                         g +++++a+++ + +k++v+ St  A+nP   +G++
       KKY21335.1 102 QLNGIKSILSACHKeKSIKRLVYTSTVAAINPDPHLGLS 140
                      567889999999762679**************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2276.99
//
Query:       KKY21336.1  [L=527]
Description: putative cytochrome p450 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-26   91.3   0.0      1e-25   90.4   0.0    1.3  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   0.0   5.8e-30     1e-25      93     441 ..     127     458 ..     104     476 .. 0.84

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 5.8e-30
                 HHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCS.EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHH CS
        p450  93 ekwkklRrfltptltsfgkl.sleelveeeaedlveklrkkagess.elditellskaaldvigsilFgarfdlledeklselvkaveelssllskssv 189
                 ++ ++  + ++ +l  + kl +++ ++e++ +  ++ l+kk+g  +  +  ++ + ++a+   ++ ++g ++ + e++    l+++  +l+ l +++s 
  KKY21336.1 127 DTLREAAKKIHVELSAK-KLgPVTRTFEDVLRADIASLKKKVGNEGrLVPFHTTFYRMAYAGNMKAIYGPNLPVTETR--IALQNFAINLYALNATPSL 222
                 56677777777788888.9999999999999999*********9994444556778899999999*****99966666..4699999999999999997 PP

                 HCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 190 qllllfpllkylptkllrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLye 288
                  +l + ++ +++p    rk  +a++++ + l k  +e   +  s+  + r+ ++++l++         +   + +  v  +lf+ + +t     wa+++
  KKY21336.1 223 PVLPTEWWNRIFP--ASRKGAQARDDVTNALIKWQQEGGLETCSD--TWRNIMQVVLDKN--------VPIVHSNRWVNMVLFGFQGNTGEQPGWAFLH 309
                 7777777888888..566777676666666666655555555555..7899999999994........7788889999999999999************ PP

                 HHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-.HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT..EEE-TT-EEEEEHHHHHT-TTTS.SSTTS- CS
        p450 289 LaknPevqeklreEidevlgdkreptyddlqkl.pyldavikEtLRlhpvvplllpRevtkdvvirg..ylipkGtevivnlyalhrdpevf.pnPeeF 383
                 +++ P++ ++++ E+d   +d   +t  d+ ++ p+l   i+EtLRl+++v     R++t d++i+g   l+pkG+ + ++  a   d+ ++  +++ F
  KKY21336.1 310 ILQSPKLWAAIQAEVDALPPD--LLTGTDFRRVtPLLYSSIHETLRLSTAVF--AGRQATIDTKIQGcdTLFPKGSLIRTMSRASAFDDRIWgADADCF 404
                 ****************99999..566666655439*************9998..88******************************************* PP

                 -GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTST CS
        p450 384 dpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpet 441
                 + +RFl +++     + + l FG G+ +C+G+++A  el+l++a+++++Fe++    +
  KKY21336.1 405 KGDRFLLNEN----LYKEELFFGGGVSACPGRHFALAELELLMAHIIREFEFDHKTLE 458
                 *******976....4666677*******************************964333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3629.82
//
Query:       KKY21337.1  [L=1233]
Description: putative ncs1 nucleoside transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-80  268.5  31.8    1.2e-79  268.1  31.8    1.1  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami
    1.9e-11   43.5   0.4    9.2e-11   41.3   0.1    2.2  2  Fungal_trans    Fungal specific transcription factor domain
  ------ inclusion threshold ------
       0.18   12.0   2.9       0.37   11.0   2.9    1.5  1  Zn_clus         Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.1  31.8   2.1e-83   1.2e-79       1     440 []      30     491 ..      30     491 .. 0.97

  Alignments for each domain:
  == domain 1  score: 268.1 bits;  conditional E-value: 2.1e-83
  Transp_cyt_pur   1 pvpeeeRtwktlnlfsiWlganlnintwvigalglalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvv 95 
                     p+p ++Rtw+ l +fs   +  + i  w++ga++l +gLn wq++l +i+g++ ++ +++l + +G k ++ fp+  R+s G r++++p+++rvv
      KKY21337.1  30 PLPPHRRTWTGLTYFSYQSSVGIIIVCWSTGASLLGFGLNAWQAILDVIIGYTCVGLLTMLGSQIGGKWHIGFPVANRFSWGMRANVFPVFNRVV 124
                     7899******************************************************************************************* PP

  Transp_cyt_pur  96 iaivwfgvqawiGsealllmlgkifgkwleigg...ailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaeg 187
                     + + wf++  w+Gs ++ + +g +++++  +++   a++ +++ ++v+ fif +  ++  ++ ++ +   + i a  + v + ++l w ++ka+g
      KKY21337.1 125 LNCTWFATESWLGSMCVKTTIGALWPSFYDMKNtlpASVPMETNDFVAWFIFCLFVAAGAWVKPEVFHWPSIIVACSTLVTSLAMLGWFVSKAGG 219
                     ***************************999999788889999***************************************************** PP

  Transp_cyt_pur 188 .Gpvldkavklgkse.........lflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaa..yganaws 270
                      G+++ +  +l+ ++         +f++++++v+a+ +t il  +D+ ryak + ++ ++q +++ l+ + ++++gi+ a++ +++  ++  +w+
      KKY21337.1 220 sGALFRNTEALAGVApasgsqfgwMFVRGITTVIASQSTGILGFADWGRYAKYPGAQRWPQGLGMGLADMYTAIVGIICASCCATIypDAGLVWN 314
                     999999887777555678899**99********************************************************99999555668*** PP

  Transp_cyt_pur 271 pldilakfdet......agvllililvalaqlgvnisanllsagldlaallPkkinikrgsliaavialvivpwkllssssklftaflsllavfl 359
                     p  +l ++ +       a+v+++++ ++l+q++++++++ ++ g d++ l+Pk+in+krg++i+  i++++ pw+l ++s+k f++ ++ +a+fl
      KKY21337.1 315 PALLLTEVQQReapaarAAVFFASVPILLSQILITVTGSCVAGGIDMSGLCPKFINLKRGAYIVLCIGILMQPWQLANTSNK-FISVMGSYAIFL 408
                     **9*****999***********************************************************************.************ PP

  Transp_cyt_pur 360 spvagviiadyfvvrrgylklaalytrrrgsaYwyrkgvNwravaayivGiaaglvgvagsvg..ikvvkgaeklfdlsylvG 440
                      p +g +  +y+ vr+  l+l +ly  +++s Ywy  gvN+r+++++++G    l+g+  sv   i + ++ ++lf++ y +G
      KKY21337.1 409 APLTGLLHCEYYLVRKQALSLSDLYKPNASSSYWYFHGVNPRTLVSFVIGFSFFLPGFVHSVTpsIVFGENWNRLFYMCYPLG 491
                     ***********************************************************999988999999999999999987 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.13   7.7e+02     121     160 ..     427     488 ..     374     490 .. 0.44
   2 !   41.3   0.1   1.5e-14   9.2e-11       2     175 ..     760     903 ..     759     909 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.13
  Fungal_trans 121 vrlarslgLhrnpsyvgkks......................lwklweeeaesrrRlwwaaF 160
                   ++l+   + +  +sy++ ++                      + + ++ + e + Rl+++++
    KKY21337.1 427 LSLSDLYKPNASSSYWYFHGvnprtlvsfvigfsfflpgfvhSVTPSIVFGENWNRLFYMCY 488
                   22222222222333333222333333333333333333333355556666666666666666 PP

  == domain 2  score: 41.3 bits;  conditional E-value: 1.5e-14
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLl 98 
                   d+ff+ ++pq+++l k   +p+         ++ sp+l++a++a++a++ +s   +++  ++  +        + +         +s+s+ ++q + 
    KKY21337.1 760 DLFFTRLNPQIGLLSKAMNNPQL-------CNSRSPFLFTAVCAIAARYYQSGILYNSVIQHARR--------AGMEA-----MLSSKSTATVQGFI 836
                   79**************6666666.......5558***********************99999876........44333.....3568889******* PP

  Fungal_trans  99 llelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppl 175
                   ll+++++ s + +    ++ +++r    + L+ ++ y          + e  +r R+w ++F+lD+  + ++G pp 
    KKY21337.1 837 LLATWSQPSASYETDNAYLKTVLRYPDNMDLNIKEMY----------IQELLARERTWMCCFVLDRSMSAQTGKPPQ 903
                   ********************************87755..........55678899********************95 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.9   6.2e-05      0.37       8      39 ..     575     605 ..     574     607 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.2e-05
                 HCT---ST.SSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus   8 kkKvKCda.kkPaCsnCkklnleCtfysesskr 39 
                 ++K+KC   +   C++C+ +n+ C+  + +s+r
  KKY21337.1 575 QGKIKCVVdDSDICRHCRIHNFSCV--RLKSQR 605
                 68******77777************..555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.51
# Mc/sec: 7252.91
//
Query:       KKY21338.1  [L=354]
Description: putative alcohol zinc-containing [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.9e-28   97.0   0.0    1.5e-27   96.2   0.0    1.5  1  ADH_zinc_N    Zinc-binding dehydrogenase
      4e-20   73.2   0.0    8.8e-20   72.1   0.0    1.6  2  ADH_zinc_N_2  Zinc-binding dehydrogenase
    3.4e-09   36.5   0.3    1.1e-08   35.0   0.3    1.9  1  ADH_N         Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
      0.092   13.0   0.0       0.21   11.8   0.0    1.6  1  TrkA_N        TrkA-N domain


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   0.0   3.3e-31   1.5e-27       1     129 [.     183     316 ..     183     317 .. 0.95

  Alignments for each domain:
  == domain 1  score: 96.2 bits;  conditional E-value: 3.3e-31
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE.. CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee.. 96 
                 gv +++v lAka+Ga+vi+++ss+ekle a+klGad++inyk+  d++e++ ++tggegvd++fe  G   t + ++k+++ gG +  +G ++g+ +  
  KKY21338.1 183 GVSIMGVLLAKASGAKVIVTSSSDEKLERARKLGADVLINYKTHlDWDEEVLKATGGEGVDIIFENGG-ALTTSKSFKCIRWGGLINSIGYVSGKIDpp 280
                 899*****************************************************************.**********************66666668 PP

                 ...EEHHHHH.HTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  97 ...fdlrnll.lkeksilGsllgslreefkealdlla 129
                    ++++ ++  ++++++G l g  r++f+e+l++++
  KKY21338.1 281 edrLNINVCAlQRNLTLKGLLNGP-RDRFEEMLAFCE 316
                 99999999777************9.*******99976 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.5   1.5e+04      45      55 ..      73      83 ..      46     112 .. 0.64
   2 !   72.1   0.0     2e-23   8.8e-20       1     133 []     215     351 ..     215     351 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.5
                  EEEEEEE---- CS
  ADH_zinc_N_2 45 ggGrlvsiggp 55
                    G +v++g+ 
    KKY21338.1 73 ASGEVVEVGEE 83
                  33777777753 PP

  == domain 2  score: 72.1 bits;  conditional E-value: 2e-23
                   TT-SEEEETT.STTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----........S-EEE-CHHHCTTT-EEEE--GGG...-. CS
  ADH_zinc_N_2   1 lGAdevidyr.tedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpp.......lsaallkpakkrkgrsvkyeflfsmkasa 85 
                   lGAd  i+y+   d+     +atggegvD+++++ g  ++ ++s+k+++ gG + sig  +        + +++  a+   +r+++++ l+   ++ 
    KKY21338.1 215 LGADVLINYKtHLDWDeevlKATGGEGVDIIFENGGALTT-SKSFKCIRWGGLINSIGYVSgkidppeDRLNINVCAL---QRNLTLKGLL---NG- 303
                   8*********999**9******************555555.*******885666666632234455443444444444...2455555555...45. PP

                   -HHHHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  86 qadileelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                   ++d++ee++a++e++ ++pvvd+vf+++ea++A+ yl +g+++GK+V+
    KKY21338.1 304 PRDRFEEMLAFCEKHDIKPVVDKVFEFSEAKDAVTYLWNGAHFGKVVI 351
                   8888*******************************************7 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.3   2.4e-12   1.1e-08       2     106 ..      32     134 ..      31     137 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 2.4e-12
                 TEEEEEEEEEEE-HHHHHHHTTS....TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTSS-SSSB CS
       ADH_N   2 gevlikvkaagiCgsDlhilkgg....kelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvsldGgfa 96 
                 +evl+k+ka++++  D ++++g     k  +++  l++  +++Gev+evg+ev+k+k Gd+V+          ++  +g+ ++ + a+ +g+s++G+++
  KKY21338.1  32 DEVLVKIKAVSLNYKDGETINGFfkhhKANQAPEHLVPCSDASGEVVEVGEEVTKWKLGDHVLSTS------YPTHLTGQVRAEHLAAGVGASRHGCLT 124
                 89***************999987774455555555***************************9833......234455555555666666666777777 PP

                 SEEEECGGGE CS
       ADH_N  97 eyvvvpekkl 106
                 +y +++e+++
  KKY21338.1 125 QYRIFKENDV 134
                 7766666655 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.8e-05      0.21      75     115 ..     184     222 ..     175     223 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.8e-05
                 HHHHHHHHHHHHTSSSEEEEEESSGGGHHHHHHHTTSEEEE CS
      TrkA_N  75 anilavllakelnpkkkiiaraqdpehaellkklgadvvis 115
                 ++i+ vllak   +++k+i+  +++e+ e ++klgadv i+
  KKY21338.1 184 VSIMGVLLAKA--SGAKVIVTSSSDEKLERARKLGADVLIN 222
                 68999999996..5589*********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2468.78
//
Query:       KKY21339.1  [L=310]
Description: putative c6 zinc finger domain containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-08   32.5   0.0    6.2e-08   32.0   0.0    1.4  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   3.4e-12   6.2e-08      85     192 ..     108     214 ..      45     281 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 3.4e-12
  Fungal_trans  85 sspssslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrpp..lldds 179
                   ++p+++ +++q+Lll+++   +  +++ +  ++   +rla +lg+h   +    +++ ++ +e  e++rR++w  +++++ +a + +     l+  +
    KKY21339.1 108 TPPPQNPYTVQALLLFAIDAHANHEKDRALDMVRRGIRLALDLGMHSSVFATT-HGFGDVVIE--ECWRRTFWELYIIERVLAADSRASEsiLITRT 201
                   7899999****************************************999988.445555555..***********************99988**** PP

  Fungal_trans 180 qinlpLPcddddl 192
                    i +pLPc+++++
    KKY21339.1 202 PIAVPLPCEESEY 214
                   *********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1955.85
//
Query:       KKY21340.1  [L=746]
Description: putative potassium channel [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-28   98.3  27.1    1.4e-15   57.0   9.3    3.1  3  Ion_trans_2  Ion channel
  ------ inclusion threshold ------
      0.054   13.0   0.3       0.18   11.3   0.0    2.0  3  SieB         Super-infection exclusion protein B


Domain annotation for each model (and alignments):
>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.6      0.36   3.2e+03      17      34 ..     166     183 ..     136     186 .. 0.54
   2 !   52.3   3.0   4.4e-18     4e-14       4      77 ..     219     289 ..     216     291 .. 0.92
   3 !   57.0   9.3   1.6e-19   1.4e-15       3      78 ..     384     458 ..     382     459 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.36
                  ....T---HHHHHHHHHH CS
  Ion_trans_2  17 eegwekwsfldalYfsfv 34 
                  ++ +   ++   lYf + 
   KKY21340.1 166 TQAYYYATYAAGLYFIIA 183
                  222333466666666665 PP

  == domain 2  score: 52.3 bits;  conditional E-value: 4.4e-18
                  HHTCHHHHHHHHT....T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2   4 llvlifgaviysleegwekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkvl 77 
                  l++l++ga+++s    +ekw++lda+Yf+  tl+T+G Gd++p t+agr f + y++ G+++++l++  + +++
   KKY21340.1 219 LTWLLLGALVFSK---LEKWQYLDAVYFANFTLLTVGIGDYSPSTHAGRSFLFPYAVGGIVILGLVVGSVRSLV 289
                  6789999999999...8999***********************************************9988765 PP

  == domain 3  score: 57.0 bits;  conditional E-value: 1.6e-19
                  HHHTCHHHHHHHHT....T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2   3 lllvlifgaviysleegwekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkvlt 78 
                  ++l++i + ++y + e  ++w+++ alYf+ ++l+TiGYGd++p ++ g+ f +++ ll +++++++++++g+ ++
   KKY21340.1 384 FILWFIGALIFYRC-EYTQQWTYFGALYFAYTSLLTIGYGDFSPMSNSGKSFFVFWSLLAIPTLTILISNMGDTVV 458
                  7899**********.667899************************9999**********************99876 PP

>> SieB  Super-infection exclusion protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   0.4       1.5   1.3e+04      15      45 ..     124     154 ..     123     155 .. 0.72
   2 ?   11.3   0.0     2e-05      0.18      39      86 ..     274     321 ..     269     324 .. 0.92
   3 ?   -3.3   0.0      0.62   5.5e+03      45      82 ..     596     633 ..     596     634 .. 0.81

  Alignments for each domain:
  == domain 1  score: -4.5 bits;  conditional E-value: 1.5
        SieB  15 Pdslleklnlgkfleeyglwiglvflisiay 45 
                 P s+++ + +  f +  +l i ++ ++  +y
  KKY21340.1 124 PFSVAQPITILGFYAASFLLIAIISIFGGGY 154
                 5567777777778888888888888888777 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 2e-05
        SieB  39 flisiayllaqvvskllaeikekikkkreqkkvekklknLteeekavL 86 
                  ++++++++ +v s +l+  kek++ + ++k+++++lk+Lt+e ++ L
  KKY21340.1 274 GIVILGLVVGSVRSLVLDRGKEKMDARNFEKTRKAVLKRLTKEDRNPL 321
                 58999**************************************99866 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.62
        SieB  45 yllaqvvskllaeikekikkkreqkkvekklknLteee 82 
                 yll+  + k+++ + +   kk+ +++ ++ l+ L e+e
  KKY21340.1 596 YLLIREIRKVYTQVGSNPPKKYDYEEWRHFLRLLGEDE 633
                 56666677777777777779999********9999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 4605.94
//
Query:       KKY21341.1  [L=180]
Description: hypothetical protein UCRPC4_g03777 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.04   14.0   0.0      0.062   13.3   0.0    1.3  1  DDE_Tnp_1_assoc  DDE_Tnp_1-associated


Domain annotation for each model (and alignments):
>> DDE_Tnp_1_assoc  DDE_Tnp_1-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.5e-06     0.062      29      84 ..      63     121 ..      53     125 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.5e-06
  DDE_Tnp_1_assoc  29 caviagadsweeieefakekeewlrefl...elengiPshdtirrvlsridpeeleeaf 84 
                      ++++  + ++e+  +f +   + + + +   +  +g Ps++t r + ++id +elee +
       KKY21341.1  63 AGITMTYFNIENLDDFRRVFASTVYDGVvdsDGIDGTPSEATTRKLRQEIDEKELEEFV 121
                      444444444444444544455555555544466778********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      603  (0.0336327); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1349.55
//
Query:       KKY21342.1  [L=228]
Description: putative mitochondrial metallochaperone [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-44  151.4   0.0    1.7e-44  151.0   0.0    1.2  1  SCO1-SenC      SCO1/SenC
    0.00013   21.8   0.0    0.00023   21.1   0.0    1.5  1  AhpC-TSA       AhpC/TSA family
     0.0016   18.7   0.0     0.0031   17.8   0.0    1.6  1  Thioredoxin_8  Thioredoxin-like


Domain annotation for each model (and alignments):
>> SCO1-SenC  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.0   0.0   2.9e-48   1.7e-44       1     134 []      48     185 ..      48     185 .. 0.95

  Alignments for each domain:
  == domain 1  score: 151.0 bits;  conditional E-value: 2.9e-48
   SCO1-SenC   1 ggpFelvdqdgeavteedlegkpslvffgFthCpdvCpttlanmaevldalgeea.ekvqplfiTvDPerDtpevlkeyleafdpriigltGskeeiak 98 
                 ggpF+++d dg+++te+dl gk+s+++fgF+hCpd+Cp +l ++a +ld+l +++ + ++p+fi++DP rDtp+vl++yl++f+p+++gltG+ e++++
  KKY21342.1  48 GGPFTMTDLDGNEFTEKDLLGKYSIIYFGFSHCPDICPDELDKLATLLDTLSQSHpNVLRPVFISCDPFRDTPAVLRTYLSEFHPHLQGLTGTWEQVKN 146
                 68****************************************************96889**************************************** PP

   SCO1-SenC  99 aakefrvyvekvedees...dytvdHsssvyLvdpdgrv 134
                 ++k++rvy+++ ++ +    dy+vdHs ++y++dp+g++
  KKY21342.1 147 VCKQYRVYFSTPPNIKPgeeDYLVDHSIYFYVMDPEGDF 185
                 ********9988875544689***************986 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   3.9e-08   0.00023       8      73 ..      51     119 ..      48     183 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 3.9e-08
                 -EEESTTCEEEECHHHTTSEEEEEEESTST-C.CHHHHHHHHHHCHHHCCCTTEEE...EEEESSSCHHH CS
    AhpC-TSA   8 felknadgetvslsdykgkpvvlffypkdwcp.vCttelpalaklyeefkergvev...igvsvdspesh 73 
                 f++++ dg++++ +d+ gk+ +++f  + +cp  C++el +la l++ + +   +v   + +s+d+  + 
  KKY21342.1  51 FTMTDLDGNEFTEKDLLGKYSIIYFGFS-HCPdICPDELDKLATLLDTLSQSHPNVlrpVFISCDPFRDT 119
                 99***********************999.89857***********9998876555511146666665555 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   5.2e-07    0.0031       1      46 [.      68     116 ..      68     184 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 5.2e-07
                    .SEEEEEE--SSSHH.HHHHHHHHHHHHHHHHH..TTSEEEEEEE-SS- CS
  Thioredoxin_8   1 gkvvlLyfgaswcpp.ckaftpklkelyeklkk..kkkveivyvsldkk 46 
                    gk+ ++yfg s+cp+ c + + kl  l ++l++  ++ ++ v++s+d  
     KKY21342.1  68 GKYSIIYFGFSHCPDiCPDELDKLATLLDTLSQshPNVLRPVFISCDPF 116
                    7999***********999999999999999998888**********964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 1476.14
//
Query:       KKY21343.1  [L=556]
Description: hypothetical protein UCRPC4_g03779 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00084   19.6   0.1        1.4    9.2   0.0    2.5  2  AAA_22           AAA domain
     0.0012   19.2   0.1          2    8.8   0.0    2.7  2  AAA_16           AAA ATPase domain
     0.0067   16.9   0.1      0.018   15.4   0.0    1.8  2  AAA              ATPase family associated with various cellul
     0.0073   15.7   0.1      0.027   13.8   0.0    1.8  2  FtsK_SpoIIIE     FtsK/SpoIIIE family
     0.0082   15.4   0.1      0.023   13.9   0.0    1.7  2  Polysacc_deac_2  Divergent polysaccharide deacetylase
  ------ inclusion threshold ------
      0.023   14.8   0.0        2.7    8.0   0.0    2.4  2  DUF87            Helicase HerA, central domain
      0.024   13.4   0.0      0.095   11.5   0.0    1.9  2  Adeno_IVa2       Adenovirus IVa2 protein
      0.025   14.4   0.1        0.1   12.3   0.1    1.9  2  DEAD             DEAD/DEAH box helicase
       0.04   13.6   0.2      0.089   12.4   0.0    1.6  2  Zot              Zonular occludens toxin (Zot)
       0.12   11.3   0.0       0.36    9.7   0.0    1.7  2  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
       0.14   11.4   0.0       0.31   10.3   0.0    1.5  1  Zeta_toxin       Zeta toxin
       0.33   10.1   0.7       0.63    9.2   0.1    1.6  2  DUF2075          Uncharacterized conserved protein (DUF2075)


Domain annotation for each model (and alignments):
>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00092       1.4       8      32 ..     160     184 ..     155     273 .. 0.84
   2 !    7.9   0.1    0.0024       3.6      84     111 ..     394     422 ..     379     447 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00092
      AAA_22   8 lvvtGesGtGKTtllrrlleqldee 32 
                 ++++G  G+GK+++l  +le +  +
  KKY21343.1 160 TFICGSQGSGKSHTLSCMLEGALLR 184
                 78*************9999887544 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0024
      AAA_22  84 qalraravielliiDEaqh.lr.seealee 111
                 +  +a+   +++++DEa++ l+ + e   +
  KKY21343.1 394 ESRKAHES-RVIVLDEAHKfLSdQRETAHF 422
                 44445555.9*********66342333222 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0014         2      21      76 ..     154     209 ..     148     227 .. 0.64
   2 !    7.6   0.1    0.0032       4.7     108     161 ..     373     426 ..     289     442 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0014
      AAA_16  21 sgrpelvllsGesGvGKsslvrellr.alekdggiflrgkcdqlesaipysalaqal 76 
                 +++p ++++ G +G+GKs  + + l+ al ++   + + ++ +  +  +y+++ +  
  KKY21343.1 154 MNEPFSTFICGSQGSGKSHTLSCMLEgALLRN-NPVGNIEFPSAAMVFHYDQFSSHV 209
                 66777899****************99444444.222233333333334554444444 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0032
      AAA_16 108 vpelagaea.srllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrl 161
                 +p ++ a+a s +  +l+ +l+  + +e+  v+vlD+++++ +++++   ++++l
  KKY21343.1 373 CPFISVADAcSMFSVALSLFLESRKAHES-RVIVLDEAHKFLSDQRETAHFTADL 426
                 44444445544455566666666666566.9********9999888776555555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.9   8.8e+03       3      15 ..     162     174 ..     161     193 .. 0.82
   2 !   15.4   0.0   1.2e-05     0.018      11     120 ..     352     454 ..     347     466 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.9
                 EESSTTSSHHHHH CS
         AAA   3 lyGppGtGKTlla 15 
                 ++G  G GK+ + 
  KKY21343.1 162 ICGSQGSGKSHTL 174
                 67999****9765 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHHT.HEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEE CS
         AAA  11 KTllakavakelg.vefleisgsell.skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivig 107
                 KT++ +a   e+g  +++ +s++ +   +  +  +  ++ ++++ k+++   ++++DE++++ +++     +e+    + L++++ ++++      vi+
  KKY21343.1 352 KTAMNHAWTFEAGsLTIVDLSCPFISvADACSMFSVALSLFLESRKAHE-SRVIVLDEAHKFLSDQ-----RETAHFTADLISVIAQQRHLA--ARVII 442
                 6666666666665466677777777655666666666677777655554.89**********9999.....8899999************84..59999 PP

                 EESSGGGSTHHHH CS
         AAA 108 atnrpdkldpall 120
                 at++p   +  ll
  KKY21343.1 443 ATQEPTLSP-RLL 454
                 999985444.444 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.8e-05     0.027      42      69 ..     160     187 ..     144     189 .. 0.90
   2 ?   -1.8   0.0         1   1.5e+03     150     191 ..     411     452 ..     394     461 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.8e-05
                   EEEE--TTSSHHHHHHHHHHHHHTT--T CS
  FtsK_SpoIIIE  42 llvaGatgsGKStalntLilSlatthtP 69 
                   + ++G++gsGKS +l  ++ +++++++P
    KKY21343.1 160 TFICGSQGSGKSHTLSCMLEGALLRNNP 187
                   68**********************9998 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1
                   -TT-......................-----------B---- CS
  FtsK_SpoIIIE 150 flvlDnyddlaaeneritsLsnqgpsygvhvlvtagrelekr 191
                    +++D  ++       i ++++q+      +++t+++ l +r
    KKY21343.1 411 KFLSDQRETAHFTADLISVIAQQRHLAARVIIATQEPTLSPR 452
                   333444443333333888888888888888888888877755 PP

>> Polysacc_deac_2  Divergent polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.5e-05     0.023      61     114 ..      35      89 ..      30      95 .. 0.91
   2 ?   -2.4   0.1       1.5   2.2e+03     102     135 ..     392     425 ..     390     448 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.5e-05
                      T.---TT-B-TTS-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHH CS
  Polysacc_deac_2  61 k.dpgpgaLlvsmseeeiekrleaalsrvpgavgvnnhmGskftedeeameavle 114
                      + ++g+ aL ++ s   ++ rl++  s++  + gv n  G+k+ + e+ ++++++
       KKY21343.1  35 EtQKGDLALASGRSTPAMRGRLRQDKSQFMRYSGVSNKAGGKANAIETRLQQLCA 89 
                      33699******************************************99999875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.5
                      HHC-HHHHHHHHHHHHHTT-EEEE-S--TT-SHH CS
  Polysacc_deac_2 102 ftedeeameavleelkergllflDsrtsaksvaa 135
                      f e+++a e+ + +l+e + +  D+r +a+  a+
       KKY21343.1 392 FLESRKAHESRVIVLDEAHKFLSDQRETAHFTAD 425
                      6666666666667777777777777777664444 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0018       2.7      28      49 ..     162     183 ..     145     193 .. 0.86
   2 ?    4.2   0.0     0.027        41      88     209 ..     257     372 ..     217     385 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0018
       DUF87  28 ilgsTGsGKSntvavLleelle 49 
                 i gs GsGKS+t + +le +l 
  KKY21343.1 162 ICGSQGSGKSHTLSCMLEGALL 183
                 78999*************9985 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.027
       DUF87  88 kelkinpwsldpeelldlleeddkpaaavqrsvleealdqaka..keekeklssdepveklleelkkekeelrklknqaiarlldkledllrkggsfsn 184
                  +++i+ ++l+ e + +l+     + + v   +le++++ +k+   e++  +++++    ++++lk   e+ +k++++  +  l+ ++d+l++++  + 
  KKY21343.1 257 IPFHIKESQLSTEIMKKLMSC--AEPEVVMPLYLERVFSILKDmaMERRVGFDYNA----FRSKLK--TEKFSKEQRDPLEIRLSLVDDFLKRYQRLKL 347
                 556666666666655555555..555556777777777777754444444444444....444555..2333444444444444555666666666645 PP

       DUF87 185 sstdliallleklekegkitiidls 209
                  +++ +a+   +  + g++ti+dls
  KKY21343.1 348 PESSKTAMNHAWTFEAGSLTIVDLS 372
                 555555555569************9 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.4e-05     0.095      54     149 ..     121     220 ..     104     246 .. 0.75
   2 ?   -1.1   0.0      0.42   6.3e+02     199     229 ..     403     433 ..     390     452 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.4e-05
  Adeno_IVa2  54 lveeneevkdiekldakllrddG....elsslnyglqPviGviyGPtGsGksqllrnlissklisPiPetvifitPekdmipPeelkaWel..qlvegn 146
                 +    +++ +++k++ ++ + dG    +l  ln++ +P+   i G  GsGks+ l  ++   l+   P   i   P   m+   ++ + ++  q++e+ 
  KKY21343.1 121 FSMLGNRIGELNKMNGNFDNVDGghpdSLVFLNMN-EPFSTFICGSQGSGKSHTLSCMLEGALLRNNPVGNIE-FPSAAMVFHYDQFSSHVasQVCEAA 217
                 55556677788888888888776222234456764.8***************************999977664.3777787777765544333788887 PP

  Adeno_IVa2 147 yek 149
                 y +
  KKY21343.1 218 YLS 220
                 755 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.42
  Adeno_IVa2 199 aiildecmeklidkksvsklfhalPsklsak 229
                 +i+lde  + l d+++ +++   l s + ++
  KKY21343.1 403 VIVLDEAHKFLSDQRETAHFTADLISVIAQQ 433
                 699*************999999888877655 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.4   2.1e+03      17      33 ..     160     176 ..     152     192 .. 0.81
   2 ?   12.3   0.1     7e-05       0.1     113     155 ..     394     433 ..     380     447 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.4
                 EEEEESTTSSHHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
        DEAD  17 vlvaaeTGsGKTlafli 33 
                  ++++  GsGK+   + 
  KKY21343.1 160 TFICGSQGSGKSHTLSC 176
                 6789999****987665 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 7e-05
                 HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 113 stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcd 155
                 +++k   ++ r++VlDEa+++l++ ++++ +  +  ++ i ++
  KKY21343.1 394 ESRK--AHESRVIVLDEAHKFLSD-QRETAHFTADLISVIAQQ 433
                 5556..7899************99.333333333333333333 PP

>> Zot  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       5.3   7.9e+03       4      15 ..     161     172 ..     160     173 .. 0.84
   2 ?   12.4   0.0   5.9e-05     0.089      78     128 ..     398     448 ..     376     454 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5.3
         Zot   4 lvtGapGsgKts 15 
                 +  G +GsgK+ 
  KKY21343.1 161 FICGSQGSGKSH 172
                 6789******95 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 5.9e-05
         Zot  78 idkgallviDEcqeifpvrakegrkdpevinaftehRhlgwDivlltqdis 128
                   +  ++v+DE++++ + +++  +   + i   ++ Rhl   +++ tq+++
  KKY21343.1 398 AHESRVIVLDEAHKFLSDQRETAHFTADLISVIAQQRHLAARVIIATQEPT 448
                 446779***************766667778******************986 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00024      0.36      14      43 ..     156     185 ..     147     200 .. 0.86
   2 ?   -2.1   0.0      0.91   1.4e+03      31      58 ..     388     415 ..     386     421 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00024
  TrwB_AAD_bind  14 etqhilivGttGsGKtqalekllrairarg 43 
                    e   ++i G++GsGK+ +l+ +l+++  r+
     KKY21343.1 156 EPFSTFICGSQGSGKSHTLSCMLEGALLRN 185
                    666799*****************9987665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.91
  TrwB_AAD_bind  31 alekllrairargdraivlDltGafvsr 58 
                    al+ +l++ +a + r+ivlD   +f+s+
     KKY21343.1 388 ALSLFLESRKAHESRVIVLDEAHKFLSD 415
                    6777899999999*******98888765 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0002      0.31      14      37 ..     155     178 ..     148     189 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0002
  Zeta_toxin  14 erPklillgGqpGAGKselaellk 37 
                 ++P + ++ G++G+GKs++++ + 
  KKY21343.1 155 NEPFSTFICGSQGSGKSHTLSCML 178
                 67999*************998655 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.5   2.3e+03       5      19 ..     161     175 ..     160     182 .. 0.83
   2 ?    9.2   0.1   0.00042      0.63      82     124 ..     394     434 ..     377     446 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.5
     DUF2075   5 lVtGvaGtGKtvvll 19 
                 ++ G  G+GK+  l+
  KKY21343.1 161 FICGSQGSGKSHTLS 175
                 899********8776 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00042
     DUF2075  82 ekkeepkedvvivDEAhrlltksdqaekqseenqlkelmkrak 124
                 e+++  + +v++ DEAh+ l+  dq+e+ + ++ l++++++++
  KKY21343.1 394 ESRKAHESRVIVLDEAHKFLS--DQRETAHFTADLISVIAQQR 434
                 566778889************..55555555677777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3634.91
//
Query:       KKY21344.1  [L=932]
Description: putative c6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-08   31.9   0.0    1.1e-07   31.1   0.0    1.3  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   6.3e-12   1.1e-07       3     137 ..     263     397 ..     261     423 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 6.3e-12
  Fungal_trans   3 rffsnfhpqfpilhkpsflpkt...ssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfs.spssslwilq 95 
                   ++ + +hp fp++ k +f +++   ++ ++ +   +    l++i+a+ a++s+ +++    ++++    ++ ++ ra++l+++d +    ++l+ +q
    KKY21344.1 263 VYMTTVHPSFPLIGKVTFASQYrrfFGGPRINPGPKWLSILNLIFAISARYSHLIEAPWRGDERD----HLIYFTRARMLSMNDDTlFAHPDLQQIQ 355
                   688999*****************987777778888888888***************998666666....5679********55555145578***** PP

  Fungal_trans  96 sLlllelyektssdralherhhgvavrlarslgLhrnpsyvg 137
                      l+++y+ ++  ++ ++ ++g+a r a+ lgL+ + ++  
    KKY21344.1 356 IEGLMAFYLTATNQINRAWTISGMATRAAVGLGLNMRNESTR 397
                   **********************************97766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (932 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.49
# Mc/sec: 5765.33
//
Query:       KKY21345.1  [L=93]
Description: hypothetical protein UCRPC4_g03781 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.30s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 605.67
//
Query:       KKY21346.1  [L=135]
Description: hypothetical protein UCRPC4_g03782 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0032   17.2   0.0     0.0045   16.7   0.0    1.3  1  B12D      NADH-ubiquinone reductase complex 1 MLRQ subunit


Domain annotation for each model (and alignments):
>> B12D  NADH-ubiquinone reductase complex 1 MLRQ subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.5e-07    0.0045       1      51 [.      32      83 ..      32      99 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.5e-07
        B12D  1 krpeliPLfvfigagvggavfylvRllltn.PDVrwnkknnpepWnklknnk 51
                ++pel+ L+++++++ g+a +y  R  +++ ++  +  +n + pW++  ++ 
  KKY21346.1 32 RDPELYILLGIMSGAFGLAGYYFGRKPTSStSEAAVAMSNTAMPWQVEGEKH 83
                58***********************976553799999999999998766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 949.37
//
Query:       KKY21347.1  [L=551]
Description: hypothetical protein UCRPC4_g03783 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0068   17.0   0.1         36    5.0   0.0    3.6  3  DUF4646   Domain of unknown function (DUF4646)


Domain annotation for each model (and alignments):
>> DUF4646  Domain of unknown function (DUF4646)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.0    0.0045        81      54      84 ..     204     234 ..     171     246 .. 0.77
   2 !    5.0   0.0     0.002        36      31      83 ..     282     334 ..     274     348 .. 0.80
   3 !    3.6   0.0    0.0054        97      87     121 ..     426     460 ..     402     465 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0045
     DUF4646  54 eedWkrFledikaaaalstaekiaagvapla 84 
                  +dW  F++ i+++ + + ++k++++  p+a
  KKY21347.1 204 FDDWGDFTSPIQSVPNTNSSNKASSNSQPTA 234
                 37********************999987765 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.002
     DUF4646  31 dgFpelaPpskavphplvthdVseedWkrFledikaaaalstaekiaagvapl 83 
                 +g+ + +  s+ ++ + ++ + +e++W+ F++  ++a++ + +++++  ++p 
  KKY21347.1 282 QGYMTQPILSHIAKAKVASSEGNENEWQDFVDGPTSASTKTSTNRTIECLVPS 334
                 56664444567777788888889**********************98887764 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.0054
     DUF4646  87 lgllgllvskaiekkmkkkkegsvgelieqWnesf 121
                 +g ++ +   a++k+ + k+e +v eli +W++++
  KKY21347.1 426 TGTSRGMKLTALDKTESLKEEREVEELIGVWQRNA 460
                 34555555556666666799***********7654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.49
# Mc/sec: 3414.07
//
Query:       KKY21348.1  [L=379]
Description: putative kh domain rna-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-42  141.8  10.2    3.4e-17   62.0   0.1    3.2  3  KH_1      KH domain
    1.1e-10   41.2  10.0      0.002   17.9   1.1    3.4  3  KH_2      KH domain
    3.3e-09   36.5   2.1      0.041   13.7   0.0    3.3  3  KH_4      KH domain
    0.00031   20.8   7.5       0.13   12.3   0.2    3.4  3  KH_5      NusA-like KH domain


Domain annotation for each model (and alignments):
>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.2   9.2e-12   4.1e-08       3      62 ..      44     102 ..      42     106 .. 0.89
   2 !   51.9   1.4   1.1e-17     5e-14       2      64 ..     146     208 ..     145     210 .. 0.93
   3 !   62.0   0.1   7.6e-21   3.4e-17       1      65 [.     299     363 ..     299     364 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 9.2e-12
                 EEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEES.STT...T.-EEEEEESHHHHHHHHH CS
        KH_1   3 rilvPsslvgriIGkgGsnIkeIreetgakIkvpk.sedegsderevtisGspeavekAke 62 
                 r +v s+ +g iIGk G+n+ ++r+etg+k  v k  +    ++r++t++G+ +++ kA  
  KKY21348.1  44 RAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKvVQGV--HDRVLTVTGPLAGISKAYS 102
                 55799999************************99888886..*********9999999975 PP

  == domain 2  score: 51.9 bits;  conditional E-value: 1.1e-17
                 EEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT....T.-EEEEEESHHHHHHHHHHH CS
        KH_1   2 lrilvPsslvgriIGkgGsnIkeIreetgakIkvpksedeg.sderevtisGspeavekAkeli 64 
                 +r+l+ ++++g iIG++G +IkeI++ +g++++    e+ + s+er+v+++G+pe++ekA+ +i
  KKY21348.1 146 IRLLISHNQMGTIIGRQGLKIKEIQDSSGVRMVAQ-KEMLPqSTERIVEVQGTPEGIEKAVWEI 208
                 5899**********************88****977.888889******************9988 PP

  == domain 3  score: 62.0 bits;  conditional E-value: 7.6e-21
                 EEEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT....T.-EEEEEESHHHHHHHHHHHH CS
        KH_1   1 tlrilvPsslvgriIGkgGsnIkeIreetgakIkvpksedeg.sderevtisGspeavekAkelie 65 
                 t+ i++Ps++vg+iIG+gGs+I eIr+ +ga+I +    +++ ++er++ti Gs+ a ekA++l++
  KKY21348.1 299 TQNISIPSDMVGCIIGRGGSKISEIRKSSGARISIA-KAPHDdTGERMFTIMGSASANEKALYLLY 363
                 5779***********************88*****98.555556*******************9987 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.2   2.6e-05      0.12      27      55 ..      43      71 ..      29      81 .. 0.85
   2 !   17.9   1.1   4.4e-07     0.002      25      65 ..     144     182 ..     130     211 .. 0.77
   3 !   15.6   0.2   2.4e-06     0.011      29      59 ..     302     332 ..     288     337 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.6e-05
                EEEEEEESCHHHHHTGGGHHHHHHHHHHH CS
        KH_2 27 viiviresqpgivIGkgGsnikkigkelr 55
                ++ ++ + + g++IGk G+n+  ++ e +
  KKY21348.1 43 LRAIVSSKEAGVIIGKAGKNVADLRDETG 71
                5678889999*************998876 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 4.4e-07
                 CEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTC CS
        KH_2  25 nrviiviresqpgivIGkgGsnikkigkelrkdieklegkk 65 
                  ++++ i  +q+g +IG++G +ik+i+   + ++  + +k+
  KKY21348.1 144 PAIRLLISHNQMGTIIGRQGLKIKEIQDSSGVRM--VAQKE 182
                 688999*********************9999988..55555 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 2.4e-06
                 EEEEESCHHHHHTGGGHHHHHHHHHHHHHHH CS
        KH_2  29 iviresqpgivIGkgGsnikkigkelrkdie 59 
                 i i +   g +IG+gGs+i +i+k  + +i 
  KKY21348.1 302 ISIPSDMVGCIIGRGGSKISEIRKSSGARIS 332
                 5566666899****************99995 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   9.2e-06     0.041      17      52 ..      27      64 ..      15      68 .. 0.73
   2 !   11.2   0.0   5.9e-05      0.26      30      54 ..     145     169 ..     137     171 .. 0.86
   3 !    9.3   0.1   0.00022      0.98      21      52 ..     291     321 ..     287     325 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.2e-06
        KH_4 17 evevtee..eeeeeveielnvegedlGrvIGkrGrtld 52
                +v  ++e  + +++ +++  v++++ G++IGk G+++ 
  KKY21348.1 27 DVPAKTEeeYAQSQLTLRAIVSSKEAGVIIGKAGKNVA 64
                555555512556666677778**************976 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 5.9e-05
        KH_4  30 eielnvegedlGrvIGkrGrtldAl 54 
                  i+l ++ +++G +IG++G  ++ +
  KKY21348.1 145 AIRLLISHNQMGTIIGRQGLKIKEI 169
                 589999*************777655 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00022
        KH_4  21 teeeeeeeveielnvegedlGrvIGkrGrtld 52 
                 te ++ee ++ ++++ ++ +G +IG+ G  ++
  KKY21348.1 291 TE-DGEEVQTQNISIPSDMVGCIIGRGGSKIS 321
                 44.4677888899***************9876 PP

>> KH_5  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.5     0.012        52       8      36 ..      46      69 ..      42      83 .. 0.86
   2 !    6.9   0.1    0.0014       6.5      13      35 ..     153     171 ..     147     176 .. 0.87
   3 !   12.3   0.2     3e-05      0.13      17      46 ..     307     335 ..     297     343 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.012
        KH_5  8 aVkshnpnvdpvGaivgkkGsrikavsse 36
                +V s++     +G i+gk G+++  + +e
  KKY21348.1 46 IVSSKE-----AGVIIGKAGKNVADLRDE 69
                566666.....9***********999887 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0014
        KH_5  13 npnvdpvGaivgkkGsrikavss 35 
                 n    ++G+i+g++G +ik++ +
  KKY21348.1 153 N----QMGTIIGRQGLKIKEIQD 171
                 3....79************9976 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 3e-05
        KH_5  17 dpvGaivgkkGsrikavsseLkgekidvve 46 
                 d vG i+g++Gs+i+++ +   g +i + +
  KKY21348.1 307 DMVGCIIGRGGSKISEIRKSS-GARISIAK 335
                 78***************9987.88888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2524.54
//
Query:       KKY21349.1  [L=916]
Description: putative allantoate permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-59  199.0   0.0    1.2e-58  198.5   0.0    1.1  1  Pkinase         Protein kinase domain
      3e-35  121.8   0.0    4.3e-35  121.2   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    8.1e-33  113.8  28.0    2.4e-32  112.3  28.6    1.5  2  MFS_1           Major Facilitator Superfamily
    1.6e-06   27.7   0.0    2.7e-06   26.9   0.0    1.2  1  Kinase-like     Kinase-like
    8.7e-05   22.0   5.4    8.7e-05   22.0   5.4    2.2  2  MFS_4           Uncharacterised MFS-type transporter YbfB
     0.0002   20.3   0.0    0.00032   19.6   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
       0.21   12.3   2.4       0.36   11.6   0.2    2.4  3  DUF1691         Protein of unknown function (DUF1691)


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.5   0.0   4.8e-62   1.2e-58       4     255 ..     141     399 ..     138     405 .. 0.87

  Alignments for each domain:
  == domain 1  score: 198.5 bits;  conditional E-value: 4.8e-62
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHH....HHSS-- CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee..kdelylvleyveggeladlle....rkgsls 96 
                 l  lGeG+ G V +++ +  +  +A+K+i ++ + + k+ ++lrE+++ k++ +++i+++y++f +  ++++ + +ey+egg+l+ +++      g   
  KKY21349.1 141 LGSLGEGAGGAVTRCMLNGGKTVFALKIITTDPNPDVKK-QILRELNFNKNCASDHICKYYGAFMDksSSTISIAMEYCEGGSLDAVYKevkkLGGRTG 238
                 678*****************************9999985.9************************95456677**************997643334488 PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS- CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkp 195
                 e+ + k+a+ +l+gl yl s++iiHrD+Kp+NiL+ ++g++K++DFG++ e+ ++ ++++f+gts+Y+APE +++++y+ ++DvWslGv+l+e+   + 
  KKY21349.1 239 EKVLGKVAEGVLQGLTYLNSRKIIHRDIKPSNILLCRDGQVKLCDFGVSGEFGTKGDANTFIGTSYYMAPERIQGQSYTITSDVWSLGVTLLEVAQHRF 337
                 9999*********************************************************************************************** PP

                 STTTSSHHHHHHHHHHTHHHHHHHCT....SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTH CS
     Pkinase 196 pfsgekgkekvekeldqlekilkilg....etkeklpeaseiseeakdllkkllkkdpkkRlta 255
                 pf+++ ++ + ++ l +   ++ i++    + k + ++  + s+++k +++ +l+k+p +  t+
  KKY21349.1 338 PFPADGTEMQPRAGLID--LLTYIVRqpipKLKDEPENGIKWSDNFKYFIECCLEKEPPRQDTI 399
                 ***66666655555555..34444444544555555555566**************99876555 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.2   0.0   1.7e-38   4.3e-35       6     200 ..     143     334 ..     138     366 .. 0.89

  Alignments for each domain:
  == domain 1  score: 121.2 bits;  conditional E-value: 1.7e-38
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHTCT..TT CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkfLrkkek..ek 99 
                  +lGeGa G V ++ l+      ++  a+K+++ + + + k+++l+e+++ k++  ++i k++g+ +  +++++ i +ey++gG+L+   ++ +k   +
   KKY21349.1 143 SLGEGAGGAVTRCMLN----GGKTVFALKIITTDPNPDVKKQILRELNFNKNCASDHICKYYGAFMdkSSSTISIAMEYCEGGSLDAVYKEVKKlgGR 236
                  79**************....889999****************************************65556699************998876441155 PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwE 197
                  +  k l ++a  v +G+ yL+s+k++Hrd+   N+Ll+++ +vk++DfG++ +     +  ++++      +mapE ++ +++t  sDvWs Gv+l E
   KKY21349.1 237 TGEKVLGKVAEGVLQGLTYLNSRKIIHRDIKPSNILLCRDGQVKLCDFGVSGEF---GTKGDANTFIGTSYYMAPERIQGQSYTITSDVWSLGVTLLE 331
                  666677899999******************************************...444555556667789************************** PP

                  HHT CS
  Pkinase_Tyr 198 ift 200
                  +++
   KKY21349.1 332 VAQ 334
                  987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3  28.6   9.3e-36   2.4e-32       1     353 []     454     823 ..     454     823 .. 0.78
   2 ?   -3.4   0.0       1.4   3.5e+03     149     187 ..     833     874 ..     830     895 .. 0.60

  Alignments for each domain:
  == domain 1  score: 112.3 bits;  conditional E-value: 9.3e-36
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslwlllvlrvlqGlg 98 
                 l+ +++l +l+ + l++a    l++  ++ ++++++l +++++g+++a++p+G+ ++r+   + +  +++++ a+ ++ ++ ++++  ++  r+l G++
  KKY21349.1 454 LFALYLLQYLDKNSLNFASVYGLKKGTHLHGQQYSWLNSIFYFGYMFAQYPAGYAMQRLPIGKfLSSIAIVWGAILMTTPA-CHNFAGIASNRFLLGVT 551
                 688999*****************************************************9999455555555555555555.599999*********** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpeepperkrkspkeee..... 188
                 +++++p+ + +++ +++  e+++ + +++ ++++++++g llg ++ +  +    W +vf+i++ vs++a+++ ll+lp+ p++ k  +++e+      
  KKY21349.1 552 EATINPGFVLVMSMYYTSAEQPLRLEIWYCTNGIATMVGGLLGYAIGHIHSglarWMYVFLIFGSVSIVAGIVSLLVLPDLPSTAKFLNERERAiaver 650
                 ***********************************************66667********************999***************999999999 PP

       MFS_1 189 .......kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls....glllaglllallalvgail.allagrlsdrlgrrr 275
                         +   +++ +  k+   dp  w+l+i+++++ + +s+l++++ ++  e++g++     +l++    ++++++++ l +++a++++ + g+ r
  KKY21349.1 651 vaanrqgIKNHTFKWYQ-AKQAALDPKTWLLFIMAVGAQIPNSALTSFTSII-IETFGFDtlgsQYLQIP--GGAVQALSLLLgGVVASKFASK-GHLR 744
                 88886665556666666.8888888889999999999999999999999997.*******5555334444..4444444433335555555555.4455 PP

       MFS_1 276 rlllallllllaalglallavtssavllll....vlvliGfglgfvfpsllalasdlappeeagtasglfn.tagslggalgp 353
                  ++++++ ++++  + +l++++s++ ++ l    +++    ++g+ f+++l+++s+++      +++g++  t +++g ++gp
  KKY21349.1 745 SWTMMFANTVCIIGASLLVGLPSDNKWGRLvaiwLCY----FQGLGFSMSLTIVSSNVAGYTKKQVTGAALfTGYCVGNIIGP 823
                 5555555555554444555555444444431111444....44445566666666666666678888888878999*****98 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.4
       MFS_1 149 gWravfyilaivsllafv...lfllllpeepperkrkspkee 187
                 g++++++++ + +++ ++     +++++ ++++r r++ +++
  KKY21349.1 833 GYHSAYIAMLVGYVIKLLsitTLYFYMWSSNKRRDRETAITL 874
                 555666655555555544434445555666666666655555 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0     1e-09   2.7e-06     158     254 ..     254     343 ..     229     350 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1e-09
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltla 253
                   +L ++ ++h ++++ n+ll ++g+++l +f+     gtk+ +++      +  pE +             +t+  d+W lG++ + ++    P+  +
   KKY21349.1 254 TYLNSRKIIHRDIKPSNILLCRDGQVKLCDFGVSGEFGTKGDANTFIgtSYYMAPERIQG---------QSYTITSDVWSLGVTLLEVAQHRFPFPAD 342
                  5899**************************************866554434555554433.........479******************99999766 PP

  Kinase-like 254 t 254
                   
   KKY21349.1 343 G 343
                  5 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   5.4   3.4e-08   8.7e-05      23     175 ..     480     635 ..     475     658 .. 0.81
   2 ?   -0.9   2.5      0.29   7.6e+02      89     150 ..     781     839 ..     711     884 .. 0.48

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 3.4e-08
       MFS_4  23 gqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvv...lvfgsslvlahaaaarrerv 118
                 ++l   q ++l+++ y GY+     a +a+++ +    l   +++  + l++  + ++fa ++  Rfl+Gv+ A++   +v++ s+       a+++  
  KKY21349.1 480 THLHGQQYSWLNSIFYFGYMFAQYPAGYAMQRLPIGKFLSSIAIVWGAILMTTPACHNFAGIASNRFLLGVTEATInpgFVLVMSMYYTS---AEQPLR 575
                 56777899************9999998888888887779999999999999999********************9754477776666655...667777 PP

       MFS_4 119 gallfaGvGlGiavsgllvllllqlglsassl...Wlalavlsavllllvalllpraalr 175
                 + + ++  G+  +v+gll +++ + + + + +    l+++ +s+v+ ++++l+lp  +++
  KKY21349.1 576 LEIWYCTNGIATMVGGLLGYAIGHIHSGLARWmyvFLIFGSVSIVAGIVSLLVLPDLPST 635
                 7899*************9988887776655554678999******999999999944433 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.29
       MFS_4  89 flaGvasAvvlvfgsslvlahaaaarrervgallfaGvGlGiavsgllvllllqlglsassl 150
                 +  G++  + l ++ss v      ++++  ga+lf G  +G +++        + g +++ +
  KKY21349.1 781 YFQGLGFSMSLTIVSSNVAGY---TKKQVTGAALFTGYCVGNIIGPQTFKSSEAPGYHSAYI 839
                 334444444444444444444...55555555555555555555555544444444444443 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.3e-07   0.00032     311     397 ..     245     322 ..     232     325 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.3e-07
  Pkinase_fungal 311 alrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhDL 397
                     + + +++g+  L    +i+HrDi   Nil++     ++ +  L D+ +  e ++   + +a++ +GT ++ma e ++g++ ++  D+
      KKY21349.1 245 VAEGVLQGLTYLN-SRKIIHRDIKPSNILLC-----RDGQVKLCDFGVSGEFGT---KGDANTFIGTSYYMAPERIQGQSYTITSDV 322
                     5677889999999.9****************.....89999************5...344568**************9888888776 PP

>> DUF1691  Protein of unknown function (DUF1691)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.4   3.6e+03      39      59 ..     522     542 ..     515     587 .. 0.78
   2 ?   11.6   0.2   0.00014      0.36      45      92 ..     591     657 ..     579     672 .. 0.75
   3 ?   -4.1   0.0         7   1.8e+04      71      83 ..     856     872 ..     840     881 .. 0.57

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.4
     DUF1691  39 slleyaaLvgsgvlHivsGla 59 
                 ++++ a+L+++ ++H  +G+a
  KKY21349.1 522 AIVWGAILMTTPACHNFAGIA 542
                 457788999999999999998 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00014
     DUF1691  45 aLvgsgvlHivsGlakwlgll..............rilkki.........kkkkrrrrwliingiaaakaa 92 
                  L+g +++Hi sGla+w+ +                    +         k  ++r r ++++++aa++++
  KKY21349.1 591 GLLGYAIGHIHSGLARWMYVFlifgsvsivagivsL----LvlpdlpstaKFLNERERAIAVERVAANRQG 657
                 699***************999777777766644440....2444555555556677777888888877655 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 7
     DUF1691  71 i....kkkkrrrrwlii 83 
                 +    +++krr r+ +i
  KKY21349.1 856 YfymwSSNKRRDRETAI 872
                 23334556666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (916 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.50
# Mc/sec: 5475.08
//
Query:       KKY21350.1  [L=217]
Description: putative phytanoyldioxygenase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-08   32.6   0.0    1.3e-07   32.1   0.0    1.2  1  PhyH      Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   7.1e-12   1.3e-07       2     150 ..      41     180 ..      40     195 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 7.1e-12
                 HHHSEEEETTSS-HHHHHHHHHHHHHHHHHCHTTCCSEEEEECEEESTTCCCEE.CCCHHCHHHHTTHHHHHHHHHHHHTSCEEEEEEEEEEEEE...E CS
        PhyH   2 eedGylviegflsaeevealraeiealldralesgdkidfffeekaaadedgll.eksinkvghflhprkvadlvrailgqdvyvaavlqsmyqd...i 96 
                 ++dG +v+e++++ + +++l++ + + +  ++ s++ ++f+f+++a +  + +   ++  + ++      +++ + a+++   +v    ++ ++    +
  KKY21350.1  41 HKDGIVVLENVIDVSHIDTLNDILSK-DVLEMISDPTRRFNFNKEARNIDTAPPpHRDLMFKDV------WCNPFAAAICAGMLV---PRPVIHYangN 129
                 89**********************99.7888888888999999888888777663344444444......555565555555554...55555554344 PP

                 EE-TTTCB-EEEEE-SGGGSTEESGCCEEEEEEESS-B-TTBT-EEEETTGGGS CS
        PhyH  97 fkqpkiGgevqpwHqDstflptdpeesvvgvwialedateenGclrfiPGSHkw 150
                 +  + +G   qp+H D +f + +  + ++   i+l da++enG + + PG+H+ 
  KKY21350.1 130 TALKATGR--QPVHSDCEFPHPQ-FPFALVMNIYLIDASPENGVTEIWPGTHNC 180
                 44444444..8**********44.69**************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1407.94
//
Query:       KKY21351.1  [L=361]
Description: hypothetical protein UCRPC4_g03788 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-14   51.3  63.6    8.6e-09   35.0  23.6    3.0  3  Collagen  Collagen triple helix repeat (20 copies)


Domain annotation for each model (and alignments):
>> Collagen  Collagen triple helix repeat (20 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   1.2      0.17   3.1e+03      33      40 ..      18      25 ..      11      31 .. 0.41
   2 !   35.0  23.6   4.8e-13   8.6e-09       1      59 [.     170     228 ..     168     229 .. 0.72
   3 !   29.7  29.6   2.2e-11   3.9e-07       1      58 [.     218     275 ..     218     278 .. 0.60

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.17
                TTSS---- CS
    Collagen 33 aGekGppG 40
                 G+ G +G
  KKY21351.1 18 GGFVGGQG 25
                11111111 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 4.8e-13
                 XXXXXXXXXXXXXXXXXX-----XXXXEEEE-TTSS-----------------BB--XX CS
    Collagen   1 GppGepGepGppGppGkrGepGeaGekGekGpaGekGppGaaGkpGapGekGeaGapge 59 
                 G++G+pG+pG+ Gp+G++G++G++G +G++G +G++G+ Ga G++G  G +G++G +g+
  KKY21351.1 170 GSSGPPGSPGSVGPSGPSGPSGASGISGASGISGASGASGASGASGISGASGASGISGA 228
                 66777777777777777777777777777777777777777777777777777777765 PP

  == domain 3  score: 29.7 bits;  conditional E-value: 2.2e-11
                 XXXXXXXXXXXXXXXXXX-----XXXXEEEE-TTSS-----------------BB--X CS
    Collagen   1 GppGepGepGppGppGkrGepGeaGekGekGpaGekGppGaaGkpGapGekGeaGapg 58 
                 G++G++G +G++G++G++G++G++G++G++G++G++G+ Ga G++G+ G++G++G++g
  KKY21351.1 218 GASGASGISGASGASGASGASGASGASGASGASGASGASGASGSRGPTGPPGPSGSSG 275
                 5566666666666666666666666666666666666666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2353.95
//
Query:       KKY21352.1  [L=111]
Description: hypothetical protein UCRPC4_g03789 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 741.27
//
Query:       KKY21353.1  [L=603]
Description: putative kelch repeat [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-30  104.5   1.2    2.3e-30  104.5   1.2    2.7  3  DUF4110         Domain of unknown function (DUF4110)
    1.2e-10   41.2   1.0    6.2e-06   26.1   0.0    4.9  5  Kelch_5         Kelch motif
    2.8e-08   33.7  12.5     0.0021   18.0   0.1    5.5  5  Kelch_4         Galactose oxidase, central domain
    9.1e-07   29.0   5.4       0.53   10.6   0.0    6.1  6  Kelch_3         Galactose oxidase, central domain
    2.7e-06   27.5   0.9    0.00078   19.6   0.1    3.6  3  Kelch_6         Kelch motif
    7.3e-06   25.8   0.2      0.035   14.1   0.0    4.3  5  Kelch_2         Kelch motif
      2e-05   24.1   0.0     0.0015   18.1   0.0    2.8  2  Kelch_1         Kelch motif
  ------ inclusion threshold ------
          9    6.5  15.3        1.8    8.8  11.3    1.9  2  DUF4629         Domain of unknown function (DUF4629)


Domain annotation for each model (and alignments):
>> DUF4110  Domain of unknown function (DUF4110)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   3.2       1.6   3.7e+03      39      59 ..      20      44 ..       8      73 .. 0.65
   2 ?   -3.9   1.2       6.7   1.5e+04      58      82 ..     432     453 ..     431     466 .. 0.44
   3 !  104.5   1.2     1e-33   2.3e-30       4      92 ..     503     593 ..     501     595 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.6
     DUF4110 39 gaek....kseKelkkeafelAeer 59
                ++++    +  K++kk+a +  +++
  KKY21353.1 20 KSAEqkahRAAKQVKKAAKSEKKAK 44
                2222234567777777776554444 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 6.7
     DUF4110  58 erywelrpvLeelralede.qeeagi 82 
                 er++e      e++  +++  ee + 
  KKY21353.1 432 ERWNEKM----EIESSDEDdDEEDDY 453
                 5777766....444444432333322 PP

  == domain 3  score: 104.5 bits;  conditional E-value: 1e-33
     DUF4110   4 ddslptPrpgEslrdFfaRTseeWqelaieslkekgaek......kseKelkkeafelAeerywelrpvLeelraledeqeeagigevvekakkk 92 
                 +d +p Prp+E+lrdFf+R+++eWq++++e++k   +        +++K+l+k+af++Ae+r+we+r   ee+raledeqeeagigevv+ a++ 
  KKY21353.1 503 NDGRPYPRPFETLRDFFSRSTQEWQNIILEKMKYGSS-IrseedqQTIKDLRKKAFNMAEDRWWECR---EEVRALEDEQEEAGIGEVVSLADRA 593
                 6899****************************97433.3366788**********************...********************99885 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.035        79       2      21 ..      85     107 ..      84     107 .. 0.86
   2 !   26.1   0.0   2.8e-09   6.2e-06       2      41 ..     114     155 ..     113     156 .. 0.92
   3 ?    2.1   0.1     0.091     2e+02       2      32 ..     170     198 ..     170     200 .. 0.70
   4 ?   -0.1   0.0      0.45     1e+03       3      24 ..     250     271 ..     247     293 .. 0.74
   5 ?    3.0   0.0     0.048   1.1e+02       5      35 ..     381     413 ..     377     417 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.035
     Kelch_5   2 PppRaghcavtvs...ekiYvyG 21 
                 P+pR+++ +++ +   ++++v+G
  KKY21353.1  85 PSPRSSATVIASPsnrNELFVFG 107
                 999********9556799****9 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 2.8e-09
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvg..rdgsvsddvyvLdlps 41 
                 Pp+R+gh + + +++i+++GG++   ++ ++  d++++d  +
  KKY21353.1 114 PPARSGHRMTYFKNYILLFGGFQDtsQQTKYLQDLWIYDAQN 155
                 9**********************66899**********9765 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.091
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvgrdgsvsd 32 
                 P +R+++++  ++    +yGG++  + +v++
  KKY21353.1 170 PDARSSFSFLPHDAGAVIYGGYS--RVKVTS 198
                 566666666666666789****9..777765 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.45
     Kelch_5   3 ppRaghcavtvsekiYvyGGkv 24 
                 p+Rag+ +  + +  +++GG+ 
  KKY21353.1 250 PQRAGATMTHHRGRGILFGGVH 271
                 5588888888888889999998 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.048
     Kelch_5   5 RaghcavtvsekiYvyGGkvg..rdgsvsddvy 35 
                 R+++ + + ++ ++++GG v    ++  +dd+y
  KKY21353.1 381 RFNAQITVQDDILFIFGGTVErgDQEFTFDDMY 413
                 77888888888899****996535555579988 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.14   3.2e+02       1      19 [.      87     107 ..      87     107 .. 0.83
   2 !   18.0   0.1   9.3e-07    0.0021       1      38 [.     116     155 ..     116     158 .. 0.94
   3 ?   -0.9   0.0      0.78   1.7e+03       2      22 ..     173     192 ..     172     198 .. 0.78
   4 ?    4.9   1.3     0.012        26       2      20 ..     252     269 ..     251     306 .. 0.72
   5 !   12.3   0.2   5.8e-05      0.13       7      36 ..     386     417 ..     381     420 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.14
     Kelch_4   1 pRaghsatsipd..gtiylfG 19 
                 pR ++++++ p+  +++++fG
  KKY21353.1  87 PRSSATVIASPSnrNELFVFG 107
                 899999999966458*****9 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 9.3e-07
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedg...tllndlylldlst 38 
                 +R gh +t+  +++i lfGG ++     + l dl+++d+++
  KKY21353.1 116 ARSGHRMTYF-KNYILLFGGFQDTSqqtKYLQDLWIYDAQN 155
                 799*******.7***********889************986 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.78
     Kelch_4   2 RaghsatsipdgtiylfGGrg 22 
                 R ++s+    d   +++GG++
  KKY21353.1 173 RSSFSFLPH-DAGAVIYGGYS 192
                 677777777.578899***86 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.012
     Kelch_4   2 RaghsatsipdgtiylfGG 20 
                 Rag+++t   +g+ +lfGG
  KKY21353.1 252 RAGATMTHH-RGRGILFGG 269
                 99*******.69******* PP

  == domain 5  score: 12.3 bits;  conditional E-value: 5.8e-05
     Kelch_4   7 atsipdgtiylfGGrgedg...tllndlylldl 36 
                 +t+ +d+ +++fGG  e g    +++d+y +dl
  KKY21353.1 386 ITV-QDDILFIFGGTVERGdqeFTFDDMYSIDL 417
                 444.58***********************9997 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.028        63      16      46 ..      50      93 ..      44      95 .. 0.62
   2 !    6.0   0.0    0.0065        15      35      49 .]     111     125 ..     100     125 .. 0.87
   3 !   10.6   0.0   0.00024      0.53       2      45 ..     127     177 ..     126     179 .. 0.79
   4 ?   -1.0   0.1         1   2.3e+03       4      12 ..     185     193 ..     184     202 .. 0.73
   5 ?   -0.2   0.1      0.61   1.4e+03      35      47 ..     245     258 ..     231     259 .. 0.71
   6 ?    3.9   0.0     0.031        69       4      28 ..     393     419 ..     390     433 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.028
     Kelch_3 16 drlndvyvydldtn............tWaei.aslppaRaghaa 46
                d ++d  ++dld+             +++e  +++p++R+++++
  KKY21353.1 50 DEDSDAEEVDLDAVlaayaeeqakflKVTEAtSTPPSPRSSATV 93
                5566666666666655555555534433444588899*****97 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0065
     Kelch_3  35 aslppaRaghaatai 49 
                 + +ppaR+gh +t++
  KKY21353.1 111 GKSPPARSGHRMTYF 125
                 779**********96 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00024
     Kelch_3   2 drlyifGGlgd..dgqdrlndvyvydldtntWaei.....aslppaRagha 45 
                 +++++fGG+ d  + +++l d++ yd ++  W +      ++ p aR++++
  KKY21353.1 127 NYILLFGGFQDtsQQTKYLQDLWIYDAQNFVWYNPnlppaSQKPDARSSFS 177
                 9**********87779999******99976888555666555677888876 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1
     Kelch_3   4 lyifGGlgd 12 
                 ++i+GG+ +
  KKY21353.1 185 AVIYGGYSR 193
                 69****994 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.61
     Kelch_3  35 as.lppaRaghaat 47 
                 a+ ++p Rag+++t
  KKY21353.1 245 ANpPNPQRAGATMT 258
                 442578******98 PP

  == domain 6  score: 3.9 bits;  conditional E-value: 0.031
     Kelch_3   4 lyifGGlgddg.qdrl.ndvyvydldt 28 
                 l+ifGG    g q+++  d+y++dl++
  KKY21353.1 393 LFIFGGTVERGdQEFTfDDMYSIDLGK 419
                 89******8444555579999999975 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   3.5e-07   0.00078       2      40 ..     117     158 ..     116     165 .. 0.94
   2 ?   -0.9   0.0         1   2.3e+03       4      22 ..     175     193 ..     172     204 .. 0.67
   3 ?    3.7   0.0     0.037        82       8      34 ..     386     416 ..     378     423 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.5e-07
     Kelch_6   2 raghslvsvggkiYifGGytds...spylnkvwvydpetksW 40 
                 r gh ++   ++i +fGG  d    ++yl ++w+yd ++ +W
  KKY21353.1 117 RSGHRMTYFKNYILLFGGFQDTsqqTKYLQDLWIYDAQNFVW 158
                 88999999******************************9999 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1
     Kelch_6   4 ghslvsvggkiYifGGytd 22 
                 ++s+  ++   +i+GGy+ 
  KKY21353.1 175 SFSFLPHDAGAVIYGGYSR 193
                 5555556667899999965 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.037
     Kelch_6   8 vsvggki.YifGGytds...spylnkvwvyd 34 
                 ++v++ i +ifGG +     + ++++++ +d
  KKY21353.1 386 ITVQDDIlFIFGGTVERgdqEFTFDDMYSID 416
                 56666644******99888866666666665 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.4   7.7e+03      10      18 ..      94     107 ..      86     107 .. 0.63
   2 !   14.1   0.0   1.6e-05     0.035       1      47 [.     116     163 ..     116     165 .. 0.89
   3 ?   -1.3   0.0       1.1   2.4e+03       6      20 ..     177     191 ..     172     202 .. 0.66
   4 ?    3.1   0.0     0.048   1.1e+02       2      44 ..     252     300 ..     251     302 .. 0.88
   5 ?    2.7   0.0     0.061   1.4e+02       2      20 ..     381     399 ..     380     420 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.4
     Kelch_2  10 p.....ggkiyvvG 18 
                 +     ++ ++v+G
  KKY21353.1  94 IaspsnRNELFVFG 107
                 23335699999998 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.6e-05
     Kelch_2   1 rrgghsssvpggkiyvvGGa.htdnpnlsssdvhvldlekhvWeevtp 47 
                 +r+gh +++  + i+++GG+ +t+    +  d++++d +  vW + + 
  KKY21353.1 116 ARSGHRMTYFKNYILLFGGFqDTSQQTKYLQDLWIYDAQNFVWYNPNL 163
                 699******************999999999999999998888877665 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.1
     Kelch_2   6 sssvpggkiyvvGGa 20 
                 s+   +   +++GG+
  KKY21353.1 177 SFLPHDAGAVIYGGY 191
                 55555666689**** PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.048
     Kelch_2   2 rgghsssvpggkiyvvGGa......htdnpnlsssdvhvldlekhvWee 44 
                 r+g +++  +g+ +++GG+      +++  +++++ +  ++ + +++ +
  KKY21353.1 252 RAGATMTHHRGRGILFGGVhdveesEEGIESEFFDGLFAWNIDRNRFFP 300
                 7788888899999**********99999999999999999999999876 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.061
     Kelch_2   2 rgghsssvpggkiyvvGGa 20 
                 r+   ++v ++ ++++GG 
  KKY21353.1 381 RFNAQITVQDDILFIFGGT 399
                 566678899*********7 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   6.8e-07    0.0015       1      39 [.     116     158 ..     116     160 .. 0.94
   2 ?    2.7   0.0     0.041        92       2      22 ..     381     401 ..     380     418 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 6.8e-07
                 BBBSEEEEEETTEEEEEEEBCS....SSBEEEEEEEETTTTEE CS
     Kelch_1   1 aragagavvvggkiYviGGsdg....gnalssvevyDpetntW 39 
                 ar+g+ ++++ ++i  +GG+ +     ++l ++++yD  +  W
  KKY21353.1 116 ARSGHRMTYFKNYILLFGGFQDtsqqTKYLQDLWIYDAQNFVW 158
                 69***********************************888777 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.041
                 BBSEEEEEETTEEEEEEEBCS CS
     Kelch_1   2 ragagavvvggkiYviGGsdg 22 
                 r +a  +v ++ ++++GG  +
  KKY21353.1 381 RFNAQITVQDDILFIFGGTVE 401
                 67788899**********877 PP

>> DUF4629  Domain of unknown function (DUF4629)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  11.3   0.00079       1.8      41     118 ..       7      84 ..       2      91 .. 0.86
   2 ?   -3.7   0.1       5.6   1.3e+04      98     115 ..     538     555 ..     530     563 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00079
     DUF4629  41 saaasdrapentakhseskaqkaassrksktkshgqektkrtrennskkaeekkqSgnkvkaeekptipkrkrkknqp 118
                 +++    a +++ak++e+ka++aa++ k+ +ks+++ ktk  r++ s   e        + aee+ +++k     + p
  KKY21353.1   7 HSSSAAMAKAKKAKSAEQKAHRAAKQVKKAAKSEKKAKTKSSRDEDSDAEEVDLDAVLAAYAEEQAKFLKVTEATSTP 84 
                 445556677889************************************999999999999****99999987666655 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5.6
     DUF4629  98 nkvkaeekptipkrkrkk 115
                 + +++ee ++  k  rkk
  KKY21353.1 538 SSIRSEEDQQTIKDLRKK 555
                 455566655555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2192  (0.12226); expected 358.6 (0.02)
Passed bias filter:                     1017  (0.0567237); expected 358.6 (0.02)
Passed Vit filter:                       181  (0.0100954); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.51
# Mc/sec: 3543.45
//
Query:       KKY21354.1  [L=1534]
Description: putative family helicase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-27   93.8   0.1    1.3e-26   92.6   0.1    1.7  1  RQC           RQC domain
    7.5e-24   84.5   0.6    4.4e-22   78.7   0.1    3.2  3  DEAD          DEAD/DEAH box helicase
    5.7e-20   71.7   0.6    1.4e-17   64.0   0.0    3.1  3  Helicase_C    Helicase conserved C-terminal domain
      3e-16   59.9   8.0    1.2e-15   58.0   8.0    2.1  1  RecQ_Zn_bind  RecQ zinc-binding
    3.7e-06   27.1   0.0    1.1e-05   25.5   0.0    1.8  1  ResIII        Type III restriction enzyme, res subunit
     0.0016   17.3   0.0     0.0021   16.8   0.0    1.2  1  SNF2_N        SNF2 family N-terminal domain
  ------ inclusion threshold ------
      0.016   15.2   0.0       0.04   13.9   0.0    1.7  1  HRDC          HRDC domain
       0.18   11.7   4.1       0.28   11.1   2.3    2.4  2  TOH_N         Tyrosine hydroxylase N terminal


Domain annotation for each model (and alignments):
>> RQC  RQC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   0.1   5.9e-30   1.3e-26       2     112 ..    1102    1219 ..    1101    1221 .. 0.94

  Alignments for each domain:
  == domain 1  score: 92.6 bits;  conditional E-value: 5.9e-30
                  --EEE-HHHHHHHHHHHHHT.TS-SBHHHHHHHHHT---CCCCCTTGGGSTTTTTTTTS-HHHHHHHHHHHHHTTSEEEE.......SSS.BEEE-C CS
         RQC    2 petvDvteeaqkilscvyrt.gqrfgaghivdvLrGsktkkirqlghdklstfGigkdlskkewrrlirqLiaegyLeedve.....eyg.vlklte 91  
                  +et D+t++a+++l++v+r+ ++++++ h+vdv+rGs  kki + ghd+l+ +G+g+dl++ e++rl+  L++e++Lee  +     + + +++++ 
  KKY21354.1 1102 FETEDFTVYAKAALQLVRRIqNNNVTLLHCVDVFRGSTHKKIVDAGHDDLEEHGSGADLDRGEVERLFYRLLSEDILEEFNKvnkvgFASqYIRVGA 1198
                  699*****************669******************************************************88777789997777****** PP

                  CGHHHHTSSS--EEESHHHXS CS
         RQC   92 karevlkgeekvklreekkks 112 
                  k++++l+g++ vk++++++++
  KKY21354.1 1199 KSSDILSGRRLVKMQVRRSPK 1219
                  ***************999876 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.79   1.8e+03      93     111 ..     356     374 ..     332     390 .. 0.70
   2 ?    1.8   0.0     0.078   1.7e+02     120     140 ..     572     592 ..     555     606 .. 0.83
   3 !   78.7   0.1     2e-25   4.4e-22       3     174 ..     699     872 ..     697     873 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.79
                 HHHTT..CSEEEEEHHHHHHH CS
                 xxxxx..xxxxxxxxxxxxxx RF
        DEAD  93 kldng..vdivvgtpgrlddl 111
                 +   +  +++v +tpgrl + 
  KKY21354.1 356 ES--RvvCRLVNTTPGRLERE 374
                 22..23399*********983 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.078
                 TTEEEEEEETHHHHHHTTTHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
        DEAD 120 sqvrflVlDEadrlldqgfsd 140
                 ++ + lVlDE d + d+ f++
  KKY21354.1 572 NKTSNLVLDEEDDFGDDAFEE 592
                 456789**********99986 PP

  == domain 3  score: 78.7 bits;  conditional E-value: 2e-25
                 HHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT...STSEEEEEET.TSSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx.xxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky...idlrvlliig.gvaardqlskldng 97 
                  Q eai+++l+g+dv+v ++TG GK+l++++p+   +    gkt   +++++P+ +L+++++++l+k+  +   i+ +v + +   v +    sk+++ 
  KKY21354.1 699 NQLEAINATLSGKDVFVLMPTGGGKSLCYQLPAT--IQ--SGKTSGVTVVISPLLSLMQDQVDHLQKLHIQavlINSEVTSEYRkMVFQALRESKVEQY 793
                 699******************************9..43..49**************************9962223334444443223333444444566 PP

                 CSEEEEEHHHHHHHH....HCTSSH.CTTEEEEEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxx....xxxxxx.xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddll....stgkln.lsqvrflVlDEadrlldq..gfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvk 174
                 +++++ tp++l +      + g+l+  +++  +V+DEa++++++  +f++++++ l +++++    +    vi+l+AT++ +vk
  KKY21354.1 794 IQLLYVTPEMLSKSQaiidNLGRLHqRHKLARIVIDEAHCVSQWghDFRPDYKE-LGEVRKQFPGVP----VIALTATATVNVK 872
                 ***********995557786666554788899************999*******.888877777767....*******997665 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0      0.02        45      12      68 ..     735     791 ..     724     803 .. 0.74
   2 !   64.0   0.0   6.4e-21   1.4e-17       8     110 ..     915    1018 ..     908    1019 .. 0.91
   3 ?   -2.0   0.0         2   4.6e+03      17      39 ..    1059    1084 ..    1052    1138 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.02
                 HTTTTSEEEEEESSHH.HHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSS CS
  Helicase_C  12 leeeggkilifvntid.rlekvklllekkgikvavlhgelpqnereeileqfnkgesd 68 
                 + +  g ++++++  + + ++v+ l +k +i+++ +++e +++ r+ ++++ ++ ++ 
  KKY21354.1 735 SGKTSGVTVVISPLLSlMQDQVDHL-QKLHIQAVLINSEVTSEYRKMVFQALRESKVE 791
                 5556666777777777444447777.4558*********************9977654 PP

  == domain 2  score: 64.0 bits;  conditional E-value: 6.4e-21
                  HHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHH CS
  Helicase_C    8 ellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqr 103 
                  + +k+  ++   ++++ +++++ek ++ l+e+ gi++  +h+ ++++ r+++ +++++ge++v++at + ++Gid p+v++V++ ++p++++ y q 
  KKY21354.1  915 NTIKKFYRNMCGIVYCLSRQNCEKiAEKLQEQYGIRARHYHAGMESEARIDVQKRWQSGEFHVIVATIAFGMGIDKPDVRFVVHHSIPKSLEGYYQE 1011
                  4455556677779*********99999999999**************************************************************** PP

                  HTTSSST CS
  Helicase_C  104 iGRtgRa 110 
                   GR+gR 
  KKY21354.1 1012 TGRAGRD 1018
                  ******6 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2
                  SEEEEEESSHHHHHH...HHHHHHHT CS
  Helicase_C   17 gkilifvntidrlek...vklllekk 39  
                  +k++ f+++++++ +   + +++e++
  KKY21354.1 1059 RKVVQFCENKSDCRRvqvLAYFNEQF 1084
                  68899999999776655577776666 PP

>> RecQ_Zn_bind  RecQ zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   8.0   5.1e-19   1.2e-15       1      66 []    1030    1097 ..    1030    1097 .. 0.91

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 5.1e-19
  RecQ_Zn_bind    1 lqDvsrlrrlieqs.eesekekeaelekleamlaycentteCrrkllleyFgeeaaeeeCgn.CDnCl 66  
                    ++D+s+l+r+i+++ e++ ++ke++ ++l++++++cen+++Crr+++l yF+e++++e+C++ CDnC+
    KKY21354.1 1030 YADASQLKRMINSDkEGKWEQKERQKDMLRKVVQFCENKSDCRRVQVLAYFNEQFDREDCNSgCDNCQ 1097
                    58*********98876777888888999********************************778****5 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   4.9e-09   1.1e-05       4     169 ..     696     867 ..     694     869 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 4.9e-09
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka..... 96 
                 +r+ Q eai+++l        k +++ m+TG GK+l++ + ++ +  k      ++++ p +sl++   ++++k+  +a+  +++++s+ +k+      
  KKY21354.1 696 FRHNQLEAINATL------SGKDVFVLMPTGGGKSLCYqLPATIQSGKT--SGVTVVISPLLSLMQDQVDHLQKLHIQAVLINSEVTSEYRKMVfqalr 786
                 7889999999998......457899**********99854333333333..33899***********************99777777777777799998 PP

                 .......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.........TTTHHHHHT---SEEEEEESS- CS
      ResIII  97 kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak........kswreilekfkeavllglTATp 169
                 ++k ++ +++l +t ++l++++   ++     +r++   i+iDEaH +++         k+  e+ ++f+   +++lTAT 
  KKY21354.1 787 ESKVEQYIQLLYVTPEMLSKSQAIIDNLGRLHQRHKLARIVIDEAHCVSQWghdfrpdyKELGEVRKQFPGVPVIALTATA 867
                 8999999*************9944466666666666669*******99997766664444666679999999999999995 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   9.5e-07    0.0021      89     236 ..     732     888 ..     277     951 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 9.5e-07
                 -.......S-EEEE--H.HHHHHHHHHHHH.H-TTS-EEE--SSHHHH-----------------EEEE-HHHHHHHT......TTS-S-S.-SEEEES CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
      SNF2_N  89 kkrkdtlagptLivvPa.slldqWeneier.hvsssalrvlvyggqkkmkkkntkvapklladydvvittYdvlsreaelqkkrsvlkqve.wkrvvlD 184
                 +++ ++ +g t++++P  sl++  ++ +++ h++   ++  v ++ +km+ +      k+ +  + + +t ++ls+ +++  +   l+q++   r+v+D
  KKY21354.1 732 TIQSGKTSGVTVVISPLlSLMQDQVDHLQKlHIQAVLINSEVTSEYRKMVFQ-ALRESKVEQYIQLLYVTPEMLSKSQAIIDNLGRLHQRHkLARIVID 829
                 2445555555*******9****999999985666666666666665544444.45567777888999********9999999999999987689***** PP

                 -GGGT--T..T.....SHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT- CS
                 xxxxxxxx..x.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 185 Eghtlkns..t.....skaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfg 236
                 E+h + +   +     +++ e+ +++ +   + lt+T + n   d++  l +  +e+f+
  KKY21354.1 830 EAHCVSQWghDfrpdyKELGEVRKQFPGVPVIALTATATVNVKVDVIHNLGMRDCEVFT 888
                 *****987541445558888888889999999999999999777777666666666666 PP

>> HRDC  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.8e-05      0.04      40      68 .]    1338    1366 ..    1322    1366 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.8e-05
                  --SHHHHHTSTTT-HHHHHHHHHHHHHHH CS
        HRDC   40 PttleeLlqiegvgkrklekygeeileai 68  
                   +++++Ll+i+g+ + +++ yg+++++++
  KKY21354.1 1338 KANTDDLLAIPGIDEERVKLYGARFIKLV 1366
                  5899*********************9975 PP

>> TOH_N  Tyrosine hydroxylase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.1   6.9e+03      14      21 ..     644     651 ..     644     651 .. 0.87
   2 ?   11.1   2.3   0.00012      0.28       4      19 ..    1506    1521 ..    1504    1524 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.1
       TOH_N  14 RravsEld 21 
                 Rr+++E +
  KKY21354.1 644 RRPLAETT 651
                 9*****75 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00012
       TOH_N    4 SltsprfkGfRravsE 19  
                  S++++ f+G+R+a+s+
  KKY21354.1 1506 STSGSMFPGRRAAASS 1521
                  99*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       959  (0.0534888); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.99u 0.30s 00:00:01.29 Elapsed: 00:00:00.50
# Mc/sec: 9180.44
//
Query:       KKY21355.1  [L=675]
Description: putative vacuolar fusion protein mon1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.7e-139  463.9   0.0   5.5e-139  463.7   0.0    1.0  1  Mon1      Trafficking protein Mon1


Domain annotation for each model (and alignments):
>> Mon1  Trafficking protein Mon1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  463.7   0.0  3.1e-143  5.5e-139       2     404 .]     197     674 ..     196     674 .. 0.95

  Alignments for each domain:
  == domain 1  score: 463.7 bits;  conditional E-value: 3.1e-143
                 HHH-SEEEEEEETTS-EEEESSS-HHHHHHHHHHHHHHHHHHH.HTT--EEEEEETTEEEEEEEETTEEEEEEE-SS--HHHHHHHHHHHHHHHHHHHH CS
        Mon1   2 wkkkkkhffilSsAGKPIYsrygseeklsslmGviqaivsffeenekdelksitagdtkfvflnkspliLvaiskteesesqlrkqLellysqllsiLt 100
                 wk+k khf ilS+AGKPIY+r+g+   +s+++G+iq+i+sf+e  +kd l+++tag  +fv+l++  l+Lvai++++ese+qlr+qL++ly+q+ls+Lt
  KKY21355.1 197 WKEKLKHFVILSAAGKPIYTRHGDGGLISGYVGIIQTIISFYE-GSKDALRTFTAGGARFVILSQHNLFLVAITRLQESEAQLRAQLDALYMQILSTLT 294
                 9******************************************.89***************************************************** PP

                 HHHHHHHHHH-TT--TTTTTTT-HHHHHHHHHHHHHH-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        Mon1 101 ksqleklfekrenfDLrrlLegtdelldslidkslelspslllsaleclklrkslRekinnillkakkkkllfgllvaenklvsvlrpkkhtlhpsDlq 199
                  +qle++f+ r++ DL r L+gt+ ll+sl+d+++  sps+llsaleclklrks+R++inn++lk++ ++ll+gllva+++lvsv+rpkkh+lhpsDlq
  KKY21355.1 295 LPQLEHIFSIRPSSDLSRPLRGTEVLLSSLADSFTLGSPSTLLSALECLKLRKSHRQAINNTFLKCRVDELLYGLLVAGGRLVSVVRPKKHSLHPSDLQ 393
                 *************************************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.................................................XXXXXXXXX CS
        Mon1 200 lLfnlisssesfkaedeesWiPiCLpkFnsngflyayvkfl.................................................eeekialvl 249
                 l+fn+i++++ +k++++esWiPiCLp Fns+g+l++yv+fl                                                 +++++a++l
  KKY21355.1 394 LIFNMIFEADGVKTSGGESWIPICLPGFNSSGYLHMYVNFLsleeaqspdpdgftstpnlesgtysatpheasssnfktskysngptnpsKDSSVAMIL 492
                 ******************************************************************************************99******* PP

                 XXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXX.................XXX..... CS
        Mon1 250 iSadkdaFfelkelkeki.....iekleksellkelkealsskklsvsdipi.pllrHFiykskknvQfvmsel.................eapys... 322
                 iS+   aF +l+++++++     +++l+++ ll+++++a+s++++ ++di     l+HF+yks+ +vQfvm+++                 +       
  KKY21355.1 493 ISTLPTAFPSLQTMSRNLltslsTQTLNSQTLLAHITNAISTGRPLPTDIVPgLPLQHFLYKSRPHVQFVMPRFpfldnptssaydsithpS---Aaqt 588
                 ******************5555556667777**************9999987578*******************999988877777665433...1445 PP

                 XXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        Mon1 323 eeerkrllklYqklhasvhek...lkllyeesek.ltllawvtssfelYlvfnplvskkaliksankilkwikkeeerlFisegav 404
                  +++++ll+ Y++lhas+h+k   +k++++ s++  t l wvt+ felY v ++++s++al++ +n++++w ++eeerlFi++gav
  KKY21355.1 589 LSSHRSLLTTYHHLHASLHAKnahVKVQHCVSTRhGTALGWVTPMFELYGVGGRGTSRSALAQGVNRVAQWAQREEERLFIIGGAV 674
                 88999**************998766999887655279*********************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.52
# Mc/sec: 3925.17
//
Query:       KKY21356.1  [L=1840]
Description: putative cellular morphogenesis regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.8e-111  369.9   0.0   2.3e-109  365.2   0.0    2.3  2  Dopey_N   Dopey, N-terminal


Domain annotation for each model (and alignments):
>> Dopey_N  Dopey, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  365.2   0.0  1.3e-113  2.3e-109       2     306 ..      58     373 ..      57     374 .. 0.98
   2 !    2.1   0.0    0.0048        86     197     268 ..    1024    1108 ..     992    1114 .. 0.68

  Alignments for each domain:
  == domain 1  score: 365.2 bits;  conditional E-value: 1.3e-113
     Dopey_N   2 kkykkykkevekaLksfe.kveeWaDlisfLgkLlkaLqssnskfevipekllvakrLaqCLnpalPsgVHqkaLevYelifenigseslskdlslylp 99 
                  +y++y++ v++aL  fe +++eWaD+isfLg+L+kaLq+++++++vip k +v++rLaqC+np+lPsgVHqkaLevY+l+f+++g++ l ++l +++p
  KKY21356.1  58 RSYRRYAAGVDRALGLFEtTLQEWADYISFLGRLQKALQAHSEDIRVIPYKAIVSRRLAQCMNPSLPSGVHQKALEVYDLVFTILGEDALGRELLIWFP 156
                 679***************99******************************************************************************* PP

     Dopey_N 100 GLlpllsyaslsvkpqlleliekyllpLg.ekLrpalkglilslLpGLeeensevfertlklleklkekvge..............kyfyqclwlaiir 183
                 GL+++ls++slsv+p +l+l++++l++++ ++Lrp+lk++il+lLpGLeee+se f++ l ll+++++k++               +yf+qcl+l+ i+
  KKY21356.1 157 GLASTLSFGSLSVRPLFLSLVQDHLVKIPvSSLRPVLKAVILALLPGLEEETSEDFDKSLTLLTQFRRKFEGtttpsgpqgkqegaAYFWQCLFLTSIT 255
                 **********************************************************************999************************** PP

     Dopey_N 184 spsrRlgalkylskklpklkeveeeeekkeklsklseeaeallspepgllvrallatledenllvqRgiLDlLlshlpldsdvlqeklskedkellvea 282
                 spsrR+g+l+yl+k lpkl ++  + ++     +++ ++ a+++pepgll+r+++++l de+llvqR++LDlL++h+ l+ + l+ ++ +ed+ llv++
  KKY21356.1 256 SPSRRIGVLAYLNKCLPKLGQDPPAVDE-----STKITIVAITTPEPGLLLRCFATGLADEQLLVQRSFLDLLVTHVSLNAPQLRGNAVQEDLLLLVTS 349
                 *******************998876655.....67778999********************************************************** PP

     Dopey_N 283 alklllrkDmSlnRRlwaWLlgpe 306
                 al ++lr+DmSlnRRlw+W+lgpe
  KKY21356.1 350 ALGVVLRRDMSLNRRLWSWFLGPE 373
                 **********************98 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.0048
     Dopey_N  197 kklpklkeveeeeekke...............klsklseeaeallspepgllvrallatlede.nllvqRgiLDlLlshlpldsdvlq 268 
                  ++   ++++ ++++k+e                 ++  +e+    sp p+ l+++ll+++ +  +  +  + +Dl++ +lpl sdv+ 
  KKY21356.1 1024 SR---ISQIARSQQKHEdrrgskdiggsirasLSESRLKESLPKPSPAPKELLSCLLEGIAKVkEPRILQKWIDLFCDTLPLWSDVIF 1108
                  23...333333333333555778888877543222444455555568899999******99865889999************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1840 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.00u 0.32s 00:00:01.32 Elapsed: 00:00:00.54
# Mc/sec: 10292.31
//
Query:       KKY21357.1  [L=886]
Description: putative c6 finger domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-09   36.4  10.0    6.6e-09   35.8  10.0    1.3  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8  10.0   3.7e-13   6.6e-09       1      38 [.     128     170 ..     128     172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 3.7e-13
                 SS-HHHHHCT---STSSSS.....-HHHHHCTHHHCCCCTCCC CS
     Zn_clus   1 haCdnCrkkKvKCdakkPa.....CsnCkklnleCtfysessk 38 
                 +aCd+Cr+kK++Cda k       CsnCk+ n+ C f + + k
  KKY21357.1 128 RACDECRRKKIRCDATKDDgtvetCSNCKRINALCAFSRVPMK 170
                 69*************666666777************8777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (886 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.56
# Mc/sec: 4804.91
//
Query:       KKY21358.1  [L=553]
Description: putative dicarboxylic amino acid permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-96  323.8  43.5      2e-96  323.5  43.5    1.0  1  AA_permease    Amino acid permease
    1.3e-22   80.3  47.3    1.5e-22   80.1  47.3    1.0  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.5  43.5  2.2e-100     2e-96       1     473 [.      56     514 ..      56     517 .. 0.97

  Alignments for each domain:
  == domain 1  score: 323.5 bits;  conditional E-value: 2.2e-100
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  hv++ia++g++Gtglf+glg  ++++Gplgall+y+ +g+++ +v  +lge+  + p++++f   a+   +p+lGf++G+n+++   + ++ e+ a+ 
   KKY21358.1  56 HVQFIAIAGAVGTGLFLGLGGSIQTGGPLGALLGYATVGLIVCAVQFALGEVTALLPVTASFVRHAEFLFDPALGFAVGWNLVYGNWLSIPSEISAIC 153
                  9************************************************************************************************* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeee 195
                   l+q+w   td++   +++++++++ ++i ++ v vyge+ef++a++ki+ i++++i+g ++  gg p +g+ gfr+++++g      ++++ a+ + 
   KKY21358.1 154 VLFQYW---TDIN-SAAWICLTIAMTFVIGIAFVGVYGEVEFFFASLKILLIVGLVIMGLVIDLGGVPGQGRiGFRYWKNPGP-----FVEYIASGSW 242
                  ******...9999.99*******************************************************************.....5555445589 PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.aspfvifikesgvsvlapli 292
                  g+f++  ++++ +vf+f+G e++a++a+E+++P+++iPka ++v+ir+++fY+ ++l++g+lv  +d  l n s +a  spfvi+ + +g++++++++
   KKY21358.1 243 GQFLGYWACMSNAVFSFAGVESIAMAAAETRNPRQAIPKACKRVFIRVAVFYIAAVLIVGMLVASDDERLNNYSGTAaQSPFVIAASAAGIPAIPSIV 340
                  9*********************************************************************998888889******************* PP

  AA_permease 293 naviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrf 390
                  nav++t+a+ss+n +l s++R+ly la  g+aP ++ + + +g P++ +l+ +++ +l++++ s ++   +vf +++ ++a   li w +i+++++r+
   KKY21358.1 341 NAVVITSAWSSSNQALLSGTRTLYGLALKGHAPQIFLRTTSWGIPYMCVLAQTAFMFLSFMALSNSAL--TVFWWFVDLTACGVLISWSVILFNHIRL 436
                  ************************************************************66666666..**************************** PP

  AA_permease 391 Rkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknk 473
                    a+k+q++ + +l+ +     + +  +l+++iiill++++  +++     + w++++f++ayl ++l+l  ++  k++++ k
   KKY21358.1 437 LSAMKKQQIPLTQLPWHNTWTRYSSPAALTLCIIILLTNGFSVFTK-----GGWSTSTFVSAYLDIPLVLTAFLLFKFIKRSK 514
                  **********************************************.....88*********************999999865 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1  47.3   1.7e-26   1.5e-22       6     406 ..      57     481 ..      52     505 .. 0.72

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 1.7e-26
  AA_permease_2   6 afalvigsvigsgifvkn..laasggpa.lilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsv 98 
                    + +++i  ++g+g f     ++ +ggp+ ++l + ++ li+  av +++ E++++lp     +  ++ +f + ++f ++w ++++ +++++s +s+
     KKY21358.1  57 VQFIAIAGAVGTGLFLGLggSIQTGGPLgALLGYATVGLIV-CAVQFALGEVTALLPVTASFVRHAEFLFDPALGFAVGWNLVYGNWLSIPSEISA 151
                    66899999999999998889999999995555555555555.6*********999*************************************9999 PP

  AA_permease_2  99 aasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl....stetdt.......ff 183
                    +   ++++++  ++   w+++ ia+ ++i++a++ +     ++ + ++ + lki l+++ l+i gl++   gg + +       +++       + 
     KKY21358.1 152 ICVLFQYWTD--INSAAWICLTIAMTFVIGIAFVGV-----YGEVEFFFASLKI-LLIVGLVIMGLVID-LGGVPGQgrigFRYWKNpgpfveyIA 238
                    9999999875..556667777766666666666544.....6666666666666.35555555666653.33333333445355655444344333 PP

  AA_permease_2 184 pngwpgv...llgllivlwsfdGfesaanvseevkk.k.dvpkaifigllivlvlyll.vniaflgvvpddei.anlsn..lgsvaalffeavggk 270
                    ++ w ++   ++ ++ +++sf+G+es+a  + e ++ +  +pka+  +++ v+v+y+  v i+ + v +dde  +n s+    s++ + + a+g +
     KKY21358.1 239 SGSWGQFlgyWACMSNAVFSFAGVESIAMAAAETRNpRqAIPKACKRVFIRVAVFYIAaVLIVGMLVASDDERlNNYSGtaAQSPFVIAASAAGIP 334
                    3344432444999999*****************8887537****************9845555566777777644444433344699999999999 PP

  AA_permease_2 271 vvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas..saaynfllsvsslgliisyll 364
                    +  +iv+++++ s++ + n a+++ +r+l+ la  g  P  f ++  +g+p+ ++  +  + ++ ++++  ++   + + + ++++++g++is+ +
     KKY21358.1 335 AIPSIVNAVVITSAWSSSNQALLSGTRTLYGLALKGHAPQIFLRTTSWGIPYMCVLAQTAFMFLSFMAL--SNsaLTVFWWFVDLTACGVLISWSV 428
                    *************************************************************86655333..333567888***********99988 PP

  AA_permease_2 365 liigal..ilrkkrphlkr........pgkilvaiigalfllfllvalf.fpp 406
                    +++  +  +  +k+ + +         + ++   +  +l++++ll ++f + +
     KKY21358.1 429 ILFNHIrlLSAMKKQQIPLtqlpwhntWTRYSSPAALTLCIIILLTNGFsVFT 481
                    87655511444444433224455566644444444445555555555443223 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.53
# Mc/sec: 3141.27
//
Query:       KKY21359.1  [L=532]
Description: putative monosaccharide transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.1e-129  431.1  26.3   5.8e-129  430.9  26.3    1.0  1  Sugar_tr  Sugar (and other) transporter
    1.2e-22   80.3  35.8    4.7e-15   55.4  17.0    2.1  2  MFS_1     Major Facilitator Superfamily
     0.0055   15.2   9.2      0.011   14.2   2.8    2.1  2  TRI12     Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
      0.091   13.3   8.6        3.6    8.2   0.7    4.2  4  Ytca      Uncharacterised protein family


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  430.9  26.3  1.3e-132  5.8e-129       1     451 [.      27     488 ..      27     489 .. 0.92

  Alignments for each domain:
  == domain 1  score: 430.9 bits;  conditional E-value: 1.3e-132
                 HHHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   1 valvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 ++ +aa+gg+ fgYd+g+i++++ +  f+k+f    +++  +      +l++si+++G ++G+l+ag l+d++GR+ ++++++++f+ig +lq a++  
  KKY21359.1  27 MCAFAAFGGIFFGYDSGYISGVMGMDYFIKEFAGPDAEAYPA---WKKSLTTSILSAGTFFGALIAGDLADFIGRRFTIIAGCIVFIIGVALQTAST-- 120
                 5899*****************************999998666...699*************************************************.. PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPryl 198
                  ++ +l++gR+++G+gvG++s+++ +y+sEiAp k+Rga+vs yq++it+Gil+a+++++++++ +++  +ri++++q+++a++l+i+l++lPESPry+
  KKY21359.1 121 -EMGLLVAGRLVAGFGVGFVSAIIILYMSEIAPRKVRGAIVSGYQFCITVGILLASCVDYATQNRNDSGSYRIPIAIQIAWAIILAIGLFLLPESPRYF 218
                 .9************************************************************888888******************************* PP

                 HHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH...................HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHH CS
    Sugar_tr 199 vekgkeeeakevlaklrgeedadrelaeekdsleaeqeee..............kaswkellssktvrqrlligvvlqifqqltGinaimyysptifen 283
                 v++gk ++a evla+lr+++ +++ +++e +++ a+ e e              + + ++l+ s ++++r+++g  lq++qq tG+n+i+y+++t+f++
  KKY21359.1 219 VKRGKLDKASEVLARLRDQNRESELIQDELAEIIANHEYElsvipsgsyfnswlNCFRGSLFVSSSNLRRTILGTSLQMMQQWTGVNFIFYFGTTFFQQ 317
                 ***************999965555555555555555444455679999*55555555555555555********************************* PP

                 SS-THH.HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHT CS
    Sugar_tr 284 lglsks.llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpq 381
                 lg     +l+++++  vn+ +t v++++v+r+GRR+ll++Ga+gm +c +i++iv   l++  + a  ++i+fi+++i++fa +wgp  wv++ E+fp+
  KKY21359.1 318 LGTISNpFLISLVTTLVNVCSTPVSFWTVERIGRRPLLIWGAFGMVVCQFIVAIVGTCLPND-DNAIKAMIAFICIYIFFFASTWGPGAWVVIGEIFPL 415
                 **75555**********************************************666666666.467889****************************** PP

                 TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH...T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGG CS
    Sugar_tr 382 svRskalaiavavnwlanflisllfpiiteaig...ggyvflvfaglavlfiifvfffvpetkgrtleeieel 451
                  +Rs + a+++a+nwl+n +i++++p++t++ +   g++vf++++ l+v  +i+ ++ vpetkg+tle+++++
  KKY21359.1 416 PIRSRGVALSTASNWLWNCIIAVITPYMTDSDKgnlGAKVFFIWGTLCVCCFIYAYILVPETKGLTLEQVDRM 488
                 ******************************9999999**********************************98 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4  17.0   1.1e-18   4.7e-15       2     189 ..      32     254 ..      31     318 .. 0.72
   2 !   27.1  15.6   4.3e-10   1.9e-06       3     181 ..     291     483 ..     289     514 .. 0.70

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 1.1e-18
       MFS_1   2 llaaflsalarsilgpalpl.alaedlgispse......igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlr 92 
                 ++++++ +++++ ++ ++ + +  +++    +e       +l +++ ++g+++++l++G l+d +Grr ++++g ++f++g ++l  a + + ll+++r
  KKY21359.1  32 AFGGIFFGYDSGYISGVMGMdYFIKEFAGPDAEaypawkKSLTTSILSAGTFFGALIAGDLADFIGRRFTIIAGCIVFIIG-VALQTAsTEMGLLVAGR 129
                 689999999999******999999999944444788888999***************************************.444423255669***** PP

       MFS_1  93 vlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggll...asslgWravfyilaivsllafvlfllllpeepperkrkspkeee 188
                 +++G+g g++ ++++ ++++++p++ rg  ++ ++ ++ +G++l+  +  +     +s+++r +  i  + ++++++    l++ ++++r  ++  ++ 
  KKY21359.1 130 LVAGFGVGFVSAIIILYMSEIAPRKVRGAIVSGYQFCITVGILLASCVDYATqnrNDSGSYRIPIAIQIAWAIILAI---GLFLLPESPRYFVKRGKLD 225
                 ************************************************99773324566699999999999999999...6666666666666665554 PP

       MFS_1 189 ............................k 189
                                             +
  KKY21359.1 226 kasevlarlrdqnreseliqdelaeiiaN 254
                 45666666665555544444444444440 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 4.3e-10
       MFS_1   3 laaflsalarsi...lgpalplalaedlg..ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa........sslwll 88 
                 l++ l +++ ++   +++ +  +  ++lg  ++p  i+l++tl   + + ++++  + ++r+Grr++l++g+++++++ ++ +++        + + ++
  KKY21359.1 291 LGTSLQMMQQWTgvnFIFYFGTTFFQQLGtiSNPFLISLVTTL---VNVCSTPVSFWTVERIGRRPLLIWGAFGMVVCQFIVAIVgtclpnddNAIKAM 386
                 5566666666654332222233444445544455556665555...445788888888********************666664335676774445589 PP

       MFS_1  89 lvlrvlqGlga.galfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslg..Wravfyilaivsllafvlfllllpeepperkr 181
                 +++ ++  ++  ++  p++ ++i ++fp + r+r+++l +a++ l   + +++ ++++ s  g     vf+i + +++ +f+ +++l+pe++     
  KKY21359.1 387 IAFICIYIFFFaSTWGPGAWVVIGEIFPLPIRSRGVALSTASNWLWNCIIAVITPYMTdSDKGnlGAKVFFIWGTLCVCCFIYAYILVPETKGLTLE 483
                 99999888887366668888**************************************66666665567***********99877777555444333 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   2.8   2.5e-06     0.011      80     238 ..      71     233 ..      67     236 .. 0.77
   2 !    4.8   0.5    0.0017       7.5      71     142 ..     315     391 ..     309     471 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.5e-06
       TRI12  80 sslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpagas.plfvgelmsnktk...flgllivsip 174
                 +sl +++ + g     l+ g l+d +grr  +i+  i+ ++g  +  ++t +  l+a   + g   g   a   l++ e+   k +   + g       
  KKY21359.1  71 KSLTTSILSAGTFFGALIAGDLADFIGRRFTIIAGCIVFIIGVALQTASTEMGLLVAGRLVAGFGVGFVSAIiILYMSEIAPRKVRgaiVSGYQFCITV 169
                 577788889999999***************************************************998875268999999998763323344333333 PP

       TRI12 175 vvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaqlhgkkvrkreelak 238
                  + +++   y  q     gs+r  + i i  + i  + + +    p +    gk  +  e la+
  KKY21359.1 170 GILLASCVDYATQNRNDSGSYRIPIAIQIAWAIILAIGLFLLPESPRYFVKRGKLDKASEVLAR 233
                 355566889*************999999887776544444444445555556776666666665 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0017
       TRI12  71 lqdvgqsensslfstlwttgqavsilvmgrltdrfgrrpfvilth....ilglvgaivg.ctatkfntllaamtllg 142
                 +q++g   n  l+s + t+ +  s  v     +r+grrp++i       +  ++ aivg c  +  n++ a ++++ 
  KKY21359.1 315 FQQLGTISNPFLISLVTTLVNVCSTPVSFWTVERIGRRPLLIWGAfgmvVCQFIVAIVGtCLPNDDNAIKAMIAFIC 391
                 7899999999999*99999999999999999********99965312114456678887566777777766665554 PP

>> Ytca  Uncharacterised protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.7   0.00079       3.6       8      59 ..     157     210 ..     153     212 .. 0.70
   2 ?   -0.9   0.2      0.56   2.5e+03      13      25 ..     199     211 ..     198     231 .. 0.72
   3 ?    6.5   0.1    0.0027        12       8      24 ..     265     281 ..     259     317 .. 0.71
   4 ?    0.3   0.2      0.23   1.1e+03      43      58 ..     386     401 ..     358     402 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00079
        Ytca   8 GsyFPaWllClaiaiaLtlvvrlvl.vrlkleleplvl.vYpclviflavllWl 59 
                 G+   ++ +C++++i+L++ v      r ++ +  +++ +  + +i+la+ l l
  KKY21359.1 157 GAIVSGYQFCITVGILLASCVDYATqNRNDSGSYRIPIaIQIAWAIILAIGLFL 210
                 77777899*********9998655415667755555541456778888887776 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.56
        Ytca  13 aWllClaiaiaLt 25 
                 aW++ lai+ +L+
  KKY21359.1 199 AWAIILAIGLFLL 211
                 7999999999886 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0027
        Ytca   8 GsyFPaWllClaiaiaL 24 
                 GsyF +Wl C+  + + 
  KKY21359.1 265 GSYFNSWLNCFRGSLFV 281
                 9*********9765554 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.23
        Ytca  43 vlvYpclviflavllW 58 
                  +++ c+ if+  + W
  KKY21359.1 386 MIAFICIYIFFFASTW 401
                 4789999988888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       940  (0.052429); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.49
# Mc/sec: 3283.43
//
Query:       KKY21360.1  [L=367]
Description: putative isoflavone reductase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-15   55.2   0.0    9.6e-15   54.8   0.0    1.2  1  NmrA             NmrA-like family
    1.6e-10   41.2   0.0    2.6e-10   40.5   0.0    1.3  1  NAD_binding_10   NAD(P)H-binding
    8.3e-06   26.2   0.0    2.8e-05   24.5   0.0    1.7  2  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
    0.00015   22.0   0.0    0.00034   20.9   0.0    1.5  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
  ------ inclusion threshold ------
      0.026   13.5   0.0      0.036   13.1   0.0    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
      0.039   13.1   0.1      0.068   12.3   0.1    1.4  1  NAD_binding_4    Male sterility protein
       0.11   12.6   0.0       0.63   10.2   0.0    2.1  2  DapB_N           Dihydrodipicolinate reductase, N-terminus
       0.13   12.1   0.0       0.21   11.5   0.0    1.2  1  KR               KR domain


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   4.3e-18   9.6e-15       3     225 ..      21     250 ..      20     291 .. 0.81

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 4.3e-18
                 ESSTTSHHHHHHHHHHHHHT-EEEE..EES-S-SHHHHHHHHSTTEEE...ES-TT-HHHHHHHHTT-SEEEE---GGS-HHHHHHHHHHHHHHHS-SE CS
        NmrA   3 viGaTGrqGksvvrallkaghkvra..lvRdtkselakslkeaGvelv...kgdlddkeslvealkgvdvvfsvtgfyskeiedgkklvdAakeaGvkh 96 
                  iGaTG +G+ + +all++ h + +  ++R+  +       + +v +      d  d e + +al+g dv +s+++  +k  +    lv+Aa +aGv++
  KKY21360.1  21 LIGATGTLGRKILDALLDQFHATSIslILRKKPEAGGIRQHSFPVDIRahyVSDYADSEEVTKALQGCDVLISALS--HKASHCELILVKAAIAAGVRR 117
                 59****************7776655226777755555555778898864234688899******************..9999999************** PP

                 EEEEE---GG.GT.SSS---TTTHHHHHHH..HHHHHC.....TS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHH CS
        NmrA  97 fiySslgddndrsnaeepavphfdsKaeie..eyvral.....gipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGa 188
                 +++S+++ + d  + +  + +   sK +ie  + +r++      i +t +++ +f  + l +    ++ ++++     +l +  +p      + + +++
  KKY21360.1 118 YMPSEYTVNIDDAEYRTAGTSNPISKGRIEwaDQLRQIavdeeKIEFTTIVPCAFIDYCLETGWWGFNIKKQTVP--TKLAQANSPRTGC--TLDFTAE 212
                 *******999988888888888888888884456777777777****************9986664444444333..3444444443333..3566788 PP

                 HHHHHHHH.HHHHTTEEEEE-SEEE-HHHHHHHHHHHH CS
        NmrA 189 fvikilkd.prklkgkriklagntlsgneivelfekki 225
                 +v+  l   p+ + +kri++a+ t++g++i++++e+++
  KKY21360.1 213 AVAMSLRMpPERTRNKRIHIAETTYTGKDILSALERVT 250
                 8888888867777**********************997 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   1.2e-13   2.6e-10       1     146 [.      23     172 ..      23     186 .. 0.75

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 1.2e-13
                     TTTSHHHHHHHHHHHHC-.T-EEEEEETTHHHCHHHHCTT...TCEE.EE--TT-CCHHHHHHTT-SEEEES---TCCHHHHHHHHHHHHHHCT- CS
  NAD_binding_10   1 GAtGkvGrllvkellarg.ghevtalvRnpeklaeleaee...glev.vegdvtdvedlaealkgadaVvsalggggkdeegaknivdaakeagv 90 
                     GAtG  Gr++++ ll++   +++ ++ R++ ++  +++++    +++  + d  d+e++++al+g+d+ +sal+++++  +    +v+aa +agv
      KKY21360.1  23 GATGTLGRKILDALLDQFhATSISLILRKKPEAGGIRQHSfpvDIRAhYVSDYADSEEVTKALQGCDVLISALSHKAS--HCELILVKAAIAAGV 115
                     9****************7555678899**999987777643334433145799*********************8876..6677789******** PP

                     -EEEEEEE.TTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHH.HHHSSSEEEEEEE-CE CS
  NAD_binding_10  91 kRfvlvsa.igvgdevpgefgewnkellkaylaakraaeel.lrasgldwTivrpggL 146
                     +R+    + ++++d   ++ g+  + + k  +++  +  ++ + + ++++T + p ++
      KKY21360.1 116 RRYMPSEYtVNIDDAEYRTAGT-SNPISKGRIEWADQLRQIaVDEEKIEFTTIVPCAF 172
                     ***9887535677654444444.34555677777777777546777788777777666 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.2e-08   2.8e-05       4      80 ..      21     101 ..      20     116 .. 0.82
   2 ?   -1.8   0.0       1.8     4e+03       8      32 ..     235     259 ..     234     295 .. 0.60

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.2e-08
                     EETTTSHHHHHHHHHHHCTSSEEEEEEEESTT.TTTSBHHHHSG...GGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHH CS
  Semialdhyde_dh   4 ivGatGyvGqellrlLeehpevelvvllsssr.saGkklaeavk...aleegkdlkvedvdeeelkevdivflalpagvsk 80 
                     ++GatG  G+++l  L ++++++ + l+ +++ +aG   +  ++      +++d+  ++  +++l+++d++++al++++s+
      KKY21360.1  21 LIGATGTLGRKILDALLDQFHATSISLILRKKpEAGGIRQHSFPvdiRAHYVSDYADSEEVTKALQGCDVLISALSHKASH 101
                     8********************9999999999889**99999999875444555555555677788*************986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.8
                     TSHHHHHHHHHHHCTSSEEEEEEEE CS
  Semialdhyde_dh   8 tGyvGqellrlLeehpevelvvlls 32 
                     t y+G+++l  Le+  + ++ +++ 
      KKY21360.1 235 TTYTGKDILSALERVTSSSEWTITP 259
                     5689999999998844444444443 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.5e-07   0.00034       3      95 ..      21     116 ..      20     139 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.5e-07
                      EE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGG...GHHHHHHHHHHH CS
  Sacchrp_dh_NADP   3 iiGa.GsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppi...ssldvlkaCiet 92 
                      +iGa G  G+ +++ l+++f+ +  i ++ r+k ++  + ++   v++ a+ +    +++ ++++l++ d++++++      + l ++ka+i++
       KKY21360.1  21 LIGAtGTLGRKILDALLDQFHAT-SISLILRKKPEAGGIRQHSFPVDIRAHYVSDYADSEEVTKALQGCDVLISALSHKashCELILVKAAIAA 113
                      79******************985.***********99**99989999999888777777779999**********9988865777889****** PP

                      T-E CS
  Sacchrp_dh_NADP  93 gvh 95 
                      gv+
       KKY21360.1 114 GVR 116
                      *96 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.6e-05     0.036       2      75 ..      21      96 ..      20     110 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.6e-05
   3Beta_HSD  2 vtGgaGFlGralvkeLvrleelkevrvlDlrespe...lleelskvnvkkviegDvtdkdkleealegvdvvihlas 75
                ++G++G lGr++  +L++  ++  +  + lr++pe   ++++++ v+++     D  d +++++al+g dv+i   s
  KKY21360.1 21 LIGATGTLGRKILDALLDQFHATSISLI-LRKKPEaggIRQHSFPVDIRAHYVSDYADSEEVTKALQGCDVLISALS 96
                58****************9999999877.5555551225777888888888899******************97655 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1     3e-05     0.068       2      34 ..      22      54 ..      21      62 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3e-05
                   E-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSH CS
  NAD_binding_4  2 TGaTGFLGkvLlekLLrttpevkiyllvRaksg 34
                    GaTG LG+ +l  LL++  +  i l +R+k +
     KKY21360.1 22 IGATGTLGRKILDALLDQFHATSISLILRKKPE 54
                   6******************999*******9866 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00028      0.63       5      75 ..      21      95 ..      20     116 .. 0.63
   2 ?   -0.7   0.0      0.67   1.5e+03      68      83 ..     203     218 ..     183     260 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00028
                EETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHH.HHSSSS--S-BEBSSHHHHHHH...-SEEEE-S CS
      DapB_N  5 vvGasGrmGkevvkaveeaedlelvaavdrkeselegkdag.ellglgklgvavtddleevlek...advliDFT 75
                ++Ga+G++G+++++a+ ++ +++  + + rk+ e+ g       ++++ + v  ++d eev+++   +dvli   
  KKY21360.1 21 LIGATGTLGRKILDALLDQFHATSISLILRKKPEAGGIRQHsFPVDIRAHYVSDYADSEEVTKAlqgCDVLISAL 95
                69*************999877777776666663444433331334444444444456666655555599999754 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.67
                 -SEEEE-S-HHHHHHH CS
      DapB_N  68 advliDFTtpeavlen 83 
                 + + +DFT+ ++++++
  KKY21360.1 203 TGCTLDFTAEAVAMSL 218
                 5688999988777765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   9.5e-05      0.21       5      92 ..      21     102 ..      19     120 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.5e-05
                 EETTTSHHHHHHHHHHHHHH.S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE----- CS
          KR   5 itGGlGgLGlelarwlaekg.arhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvl 92 
                 ++G++G LG+++ + l+++  a+++ l+ R+++   +       ++++   v+++a  vsd ++ e++ ++++  +  i+   h A + 
  KKY21360.1  21 LIGATGTLGRKILDALLDQFhATSISLILRKKP---E----AGGIRQHSFPVDIRAHYVSDYADSEEVTKALQGCDVLISALSHKASHC 102
                 68***************9977**********32...2....335667777777777777777777777777776667777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2705.18
//
Query:       KKY21361.1  [L=394]
Description: hypothetical protein UCRPC4_g03799 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2713.48
//
Query:       KKY21362.1  [L=151]
Description: putative membrane-associated proteins in eicosanoid and glutathione metabolism [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-22   78.0   0.2    6.8e-22   77.8   0.2    1.0  1  MAPEG     MAPEG family


Domain annotation for each model (and alignments):
>> MAPEG  MAPEG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.2   3.8e-26   6.8e-22       3     129 ..      18     142 ..      16     143 .. 0.93

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 3.8e-26
                 HHHHHHHHHHHHHHHHHHHHHHHTT--SS---S......SH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.T-HHHHHHHHHHHHHHHHHHH.HH CS
       MAPEG   3 lyagllallllllslivvkerrkakiaigegkanapralddklppklqrairahgNflEyvplfllavllaeltgaetglaallaaafvvaRvlha.lg 100
                 ++a+ + ++ +lls +vv++r+k     g+++     ++dd+ ++ l  a r+h+Nf+E+vpl++l+++++el+g++ +++++++ +++++R+lh+ +g
  KKY21362.1  18 TFALPFTAYFFLLSGRVVSQRLKSERYVGDST----TEHDDPANDPLFVASRCHQNFVENVPLAFLLAAVVELNGGNRKVLTGALSSLLALRILHSeFG 112
                 677888999********************999....556777777***************************************************999 PP

                 HHH-...SGGGHHHHHHHHHHHHHHHHHHH CS
       MAPEG 101 yiag.gpppgRslgflltllvllvlsllal 129
                 ++ +   ++gR +g++ t++++++l+++a 
  KKY21362.1 113 LLGKgAMAFGRPVGYFGTVGIMGALAGYAT 142
                 999999999****************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1123.70
//
Query:       KKY21363.1  [L=834]
Description: putative erythromycin esterase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (834 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       900  (0.050198); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.49
# Mc/sec: 5083.30
//
Query:       KKY21364.1  [L=548]
Description: putative abc transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-25   88.8   0.1    7.4e-25   88.1   0.1    1.4  1  ABC_tran       ABC transporter
    1.6e-24   86.5  24.5    2.3e-24   86.0  24.5    1.2  1  ABC2_membrane  ABC-2 type transporter
    1.7e-05   24.8   0.1    9.2e-05   22.4   0.0    2.0  2  RsgA_GTPase    RsgA GTPase
      4e-05   23.6   1.3       0.13   12.0   0.0    2.7  3  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    8.7e-05   22.1   0.1    0.00028   20.4   0.1    1.7  1  SMC_N          RecF/RecN/SMC N terminal domain
     0.0003   21.2   0.0    0.00052   20.4   0.0    1.4  1  AAA_16         AAA ATPase domain
    0.00044   20.5   0.0      0.001   19.4   0.0    1.6  1  AAA_22         AAA domain
    0.00048   18.9   0.1      0.012   14.4   0.0    2.1  2  AAA_13         AAA domain
    0.00076   19.1   0.1     0.0018   17.9   0.1    1.5  1  AAA_25         AAA domain
     0.0049   17.4   0.0      0.012   16.1   0.0    1.7  1  AAA_18         AAA domain
     0.0073   16.0   0.1      0.021   14.6   0.1    1.7  1  AAA_29         P-loop containing region of AAA domain
     0.0097   16.2   0.0      0.017   15.4   0.0    1.4  1  AAA_28         AAA domain
  ------ inclusion threshold ------
      0.013   15.6   0.0      0.025   14.7   0.0    1.5  1  AAA_33         AAA domain
      0.013   15.5   0.1      0.032   14.3   0.1    1.6  1  MMR_HSR1       50S ribosome-binding GTPase
      0.014   15.4   0.1      0.042   13.8   0.0    1.8  1  Rad17          Rad17 P-loop domain
      0.016   14.9   0.1      0.027   14.2   0.1    1.3  1  AAA_30         AAA domain
      0.019   14.9   0.1      0.047   13.6   0.0    1.7  1  NACHT          NACHT domain
      0.021   14.4   0.1      0.041   13.5   0.1    1.4  1  cobW           CobW/HypB/UreG, nucleotide-binding domain
      0.022   15.2   0.0       0.31   11.5   0.0    2.2  2  AAA            ATPase family associated with various cellular
       0.04   13.7   0.1        0.1   12.4   0.1    1.7  1  RuvB_N         Holliday junction DNA helicase RuvB P-loop dom
       0.08   12.3   0.0        7.1    6.0   0.0    2.2  2  TniB           Bacterial TniB protein
      0.096   12.7   0.1        0.2   11.6   0.1    1.5  1  TsaE           Threonylcarbamoyl adenosine biosynthesis prote
      0.097   11.9   0.1         14    4.8   0.0    2.4  2  NTPase_P4      ATPase P4 of dsRNA bacteriophage phi-12
       0.12   11.5   0.0       0.21   10.6   0.0    1.4  1  T2SSE          Type II/IV secretion system protein
       0.12   12.4   0.0        0.4   10.7   0.0    1.9  2  AAA_14         AAA domain
       0.14   11.8   0.0       0.38   10.4   0.0    1.7  2  AAA_24         AAA domain
       0.15   11.2   0.0       0.38    9.9   0.0    1.6  1  NB-ARC         NB-ARC domain
       0.16   12.4   0.4       0.37   11.3   0.1    1.7  1  AAA_23         AAA domain
       0.18   11.8   0.0        1.1    9.3   0.1    2.1  2  AAA_5          AAA domain (dynein-related subfamily)
       0.19   12.0   0.3       0.32   11.3   0.3    1.5  1  AAA_19         AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.1   1.2e-27   7.4e-25       8     137 .]      68     212 ..      61     212 .. 0.91

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 1.2e-27
                 EETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..........HHHTC...HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxx...xxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..........esdee...iekal 89 
                   +ge+va++G++G+GK+tLl++la+        te +il+dgk++     ++lr+ +++++qe+ l   lt++e+           ++e+   ie+ l
  KKY21364.1  68 AVAGELVALMGPSGSGKTTLLNVLAKRKAAakarTESHILVDGKPIGW---TELRRISSYVEQEDALIGSLTIKETmefaarlalpSKKERldlIEDRL 163
                 568***********************998888899********99987...99************************99999999744444677***** PP

                 HHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpta 137
                 + +gl++ +++ +++   + +SgGqk+r+++a  l+++pk+l+lDEpt+
  KKY21364.1 164 QAFGLQQQTNSLIGTPVrKGISGGQKRRLSVASQLVTNPKILFLDEPTS 212
                 *******99999988879*****************************96 PP

>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0  24.5   3.8e-27   2.3e-24       3     190 ..     357     545 ..     355     546 .. 0.92

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 3.8e-27
  ABC2_membrane   3 ikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.nsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsayv 97 
                    i++ll r+f++ +rd   +   r+++   la+++gtvf +l+ ++++++ + +++ff   f++f+a++ v p f  +r+++ +e++++ly + a+ 
     KKY21364.1 357 ILVLLHRSFIKSYRDVLAY-GIRIAMYTGLAIMMGTVFLRLDtHQSSIQPFTNAIFFGGAFMSFMAVAYV-PAFLEDRSTFIKERANGLYGPLAFN 450
                    789*************777.99********************556666688************7777777.************************* PP

  ABC2_membrane  98 lakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkwlq 190
                    l+++l+ lp+ +l+++if+li+y+l ++ ++  +f++ ++ l+l ++aa sl +++s++ap f +a  ++ +   +++ ++Gf++p  ++ ++++
     KKY21364.1 451 LSNFLIGLPYLFLITIIFSLIAYWLGNFVPDaqAFWIWIMWLFLDLVAAESLVVFVSSIAPVFVVALAVTAFANGLWMCVGGFLVPMGTLNVFWK 545
                    *************************9999999666666777777788999****************************************76885 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.5e-07   9.2e-05      77     127 ..      45      99 ..      16     111 .. 0.64
   2 ?   -0.6   0.0       1.8     1e+03      13      43 ..     229     259 ..     217     263 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.5e-07
                  SEEEE--TTTHTTHHHHH....HHCTTSEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase  77 yevllvsaktkegleelk....ellkdktsvlvGqSGvGKStLinallpelelkt 127
                  ++v++ + ktke+   l+    +++++++++l+G+SG GK+tL+n+l+ ++ ++ 
   KKY21364.1  45 VNVTVKDRKTKEDRLILSdahgHAVAGELVALMGPSGSGKTTLLNVLAKRKAAAK 99 
                  5555555555554444431111467899*******************99765444 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.8
                  EES--EEEEEEESTTTT--HHHHHHHHHHHH CS
  RsgA_GTPase  13 vaNvdqllivvslkepelslnlldrfLvlae 43 
                  +a   +++++ s+++p++++  l   Lvl+ 
   KKY21364.1 229 IAQQYRIIVIASIHQPSTTTYKLFDKLVLLS 259
                  555567999********99999887777765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2       5.7   3.4e+03     114     159 ..      18      63 ..      11      68 .. 0.75
   2 !    9.9   0.1   0.00099      0.59       2      19 ..      74      91 ..      73     166 .. 0.79
   3 !   12.0   0.0   0.00022      0.13     238     293 ..     185     238 ..     152     247 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.7
      AAA_21 114 eargirggvsvfslkelsvsepndlqfgkaltditsrawsllllld 159
                 ++ +i +  sv+ +   +++e+++++++ +++++++++++ l l+d
  KKY21364.1  18 NKHDIEKAFSVRNHLLNNIAESFSWHSVNVTVKDRKTKEDRLILSD 63 
                 5555666667777778888999999999999999999988887776 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00099
      AAA_21  2 nvliGpNgsGKSnLLdal 19
                 +l Gp gsGK++LL  l
  KKY21364.1 74 VALMGPSGSGKTTLLNVL 91
                6899***********999 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00022
      AAA_21 238 SdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQvi 293
                 S G+kr l +++ l   +   ++l++DEp +gL+ ++  +++  +  ++++ ++ vi
  KKY21364.1 185 SGGQKRRLSVASQLVTNP---KILFLDEPTSGLDSAASYEVMSYIkTIAQQYRIIVI 238
                 889999977777777666...8************99999999777444444444445 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   4.6e-07   0.00028      25     198 ..      72     241 ..      61     261 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.6e-07
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkev 123
                 ++ a++Gp GSGK+ ll+    vL +r+a + ++++ s+++   k    ++  +++ ++++ed+       +++i+ +++     + ++  k+ +   +
  KKY21364.1  72 ELVALMGPSGSGKTTLLN----VLAKRKA-AAKARTESHILVDGKPIGWTELRRISSYVEQEDAL----IGSLTIKETMEFA--ARLALPSKKERLDLI 159
                 67899*********9987....5687777.77777777777775777777888888888888877....3344444444444..447788888888888 PP

                 HHHHHCTT-STT...........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SS CS
                 xxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 124 sellesagiske...........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislr 198
                 ++ l+  g++++            +SgG+k  +     +A q v    + +lDe  + LD +   +v +++k+  ++  +ivi+  
  KKY21364.1 160 EDRLQAFGLQQQtnsligtpvrkGISGGQKRRL----SVASQLVTNPKILFLDEPTSGLDSAASYEVMSYIKTIAQQYRIIVIASI 241
                 888888888888888888888889******955....55677777788899*******************************9754 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   8.7e-07   0.00052      15      51 ..      64      98 ..      54     209 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 8.7e-07
      AAA_16 15 alervrsgrpelvllsGesGvGKsslvrellralekd 51
                a + + +g  elv l G+sG+GK++l++ l+++  ++
  KKY21364.1 64 AHGHAVAG--ELVALMGPSGSGKTTLLNVLAKRKAAA 98
                44455555..89****************999733322 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.7e-06     0.001       7     123 ..      73     235 ..      69     247 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.7e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee...................................erpevv.fvtlpsstsskdllrellralglelk 69 
                 +++++G+sG+GKTtll+ l++++ ++++ +e                                   e  e++ +  lps++++ dl ++ l+a+gl++ 
  KKY21364.1  73 LVALMGPSGSGKTTLLNVLAKRKAAAKARTEshilvdgkpigwtelrrissyveqedaligsltikETMEFAaRLALPSKKERLDLIEDRLQAFGLQQQ 171
                 6799******************97766666699999999999999999999999888888888777555555688899999999999999999998877 PP

      AAA_22  70 a.....erlsseellealeqalrarav...ielliiDEaqh.lr...seealeeLrsllnlsrkgv 123
                 +      + ++     + ++ + a +    +++l +DE    l+   s e+++++++++   ++ +
  KKY21364.1 172 TnsligTPVRKGISGGQKRRLSVASQLvtnPKILFLDEPTSgLDsaaSYEVMSYIKTIAQ--QYRI 235
                 777775444444444666666666555777778888887777775555777777777776..5555 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.083        50      23      46 ..      78      99 ..      75     127 .. 0.75
   2 !   14.4   0.0   1.9e-05     0.012     521     562 ..     196     234 ..     190     243 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.083
      AAA_13 23 GwNGaGKTtLSrllrslelgetep 46
                G  G+GKTtL ++l++ +  ++ +
  KKY21364.1 78 GPSGSGKTTLLNVLAKRK--AAAK 99
                778***********9953..3333 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.9e-05
      AAA_13 521 dseigkdkivviDDPvSSLDsnslfivfsliksrllkkkkak 562
                 ++ +++ ki ++D P S LDs +++ v+s+ik+ +   ++++
  KKY21364.1 196 SQLVTNPKILFLDEPTSGLDSAASYEVMSYIKTIA---QQYR 234
                 5557899**************************98...5554 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1     3e-06    0.0018      27      54 ..      65      92 ..      51     104 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3e-06
      AAA_25 27 kgllpagelallaGapgtGKttlaldla 54
                +g+ +agel++l+G++g+GKttl+  la
  KKY21364.1 65 HGHAVAGELVALMGPSGSGKTTLLNVLA 92
                7999*******************98877 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     2e-05     0.012       1      22 [.      74      95 ..      74     147 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2e-05
      AAA_18  1 IlltGtpGvGKttlakeLskrl 22
                ++l+G++G+GKttl + L+kr 
  KKY21364.1 74 VALMGPSGSGKTTLLNVLAKRK 95
                689***************9995 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   3.5e-05     0.021      23      39 ..      71      88 ..      61      96 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.5e-05
      AAA_29 23 g.atlltGpsGsGKSTll 39
                g  + l+GpsGsGK+Tll
  KKY21364.1 71 GeLVALMGPSGSGKTTLL 88
                55789************9 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.8e-05     0.017       2      26 ..      74      98 ..      73     147 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.8e-05
      AAA_28  2 ivitGgestGKTtlleaLaargypv 26
                ++++G++++GKTtll+ La+r+   
  KKY21364.1 74 VALMGPSGSGKTTLLNVLAKRKAAA 98
                89*****************996554 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   4.2e-05     0.025       1      24 [.      73      96 ..      73     167 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.2e-05
      AAA_33  1 lvllvGlpGsGKstlaerllkklg 24
                lv l G++GsGK+tl+  l+k+ +
  KKY21364.1 73 LVALMGPSGSGKTTLLNVLAKRKA 96
                7899*************9998876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   5.3e-05     0.032       2      27 ..      74      99 ..      73     107 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.3e-05
                EEEEESTTSSHHHHHHHHHTSTEEES CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltgekaivs 27
                va++G + +GK+tL+n l ++ka ++
  KKY21364.1 74 VALMGPSGSGKTTLLNVLAKRKAAAK 99
                89*****************9866443 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     7e-05     0.042      43      70 ..      69      96 ..      43     123 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7e-05
       Rad17 43 rkkriLLisGPsGCgkstvvkvLskelg 70
                   +++ + GPsG gk+t ++vL+k  +
  KKY21364.1 69 VAGELVALMGPSGSGKTTLLNVLAKRKA 96
                44558889*****************876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   4.5e-05     0.027      13      46 ..      68      99 ..      62     127 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.5e-05
      AAA_30 13 lltsgdrvavltGpAGtGKttalkalreaweaag 46
                +++++  +++l Gp G+GKtt+l++l++  +aa+
  KKY21364.1 68 AVAGE--LVALMGPSGSGKTTLLNVLAKRKAAAK 99
                55555..899****************76655553 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.9e-05     0.047       2      28 ..      73      99 ..      72     108 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.9e-05
                CEEEEC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawaegk 28
                lv+l G++GsGKTtLl  la   a+ k
  KKY21364.1 73 LVALMGPSGSGKTTLLNVLAKRKAAAK 99
                799**************9998766555 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   6.9e-05     0.041       3      26 ..      74      97 ..      72     106 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.9e-05
                EEEEESTTCCHHHHHHHHHCT--S CS
        cobW  3 tvltGflGsGKTtLlnhllenrag 26
                + l G+ GsGKTtLln l +++a 
  KKY21364.1 74 VALMGPSGSGKTTLLNVLAKRKAA 97
                5689************99966654 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00052      0.31       2      22 ..      75      95 ..      74     145 .. 0.80
   2 ?    1.3   0.0      0.73   4.4e+02      55      74 ..     197     217 ..     167     255 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00052
                EEESSTTSSHHHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavakel 22
                 l+Gp G GKT+l + +ak  
  KKY21364.1 75 ALMGPSGSGKTTLLNVLAKRK 95
                699***************983 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.73
                 HTS.TSEEEEEETGGGHHHHH CS
         AAA  55 eka.kpsilfiDEidalaksr 74 
                 +   +p+ilf+DE  +   s 
  KKY21364.1 197 QLVtNPKILFLDEPTSGLDSA 217
                 3335689*****966655554 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00017       0.1      20      64 ..      58     102 ..      46     132 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00017
      RuvB_N  20 kifieaakkreealdhvllyGpPGlGkttlakiiakelgvklkit 64 
                 +++++ a+    a + v l+Gp G Gkttl +++ak   +    t
  KKY21364.1  58 RLILSDAHGHAVAGELVALMGPSGSGKTTLLNVLAKRKAAAKART 102
                 556677777778888999*****************9766544443 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.012       7.1      38      69 ..      74     105 ..      63     109 .. 0.85
   2 ?    3.9   0.0     0.051        31     106     159 ..     188     239 ..     174     244 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.012
        TniB  38 lllvGdsnnGKtmivekFarlhppekdedaek 69 
                 + l+G+s  GKt++++  a+++ ++k  ++++
  KKY21364.1  74 VALMGPSGSGKTTLLNVLAKRKAAAKARTESH 105
                 6799***************9999888766665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.051
        TniB 106 kleqqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivl 159
                 ++++  ++    +++++L +DE  + l   + +  e++  +k++ ++++i +++
  KKY21364.1 188 QKRRLSVASQLVTNPKILFLDEPTSGL--DSAASYEVMSYIKTIAQQYRIIVIA 239
                 555555555556789************..5667789*************98875 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00034       0.2      16      43 ..      67      95 ..      52     108 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00034
                HCH.TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE 16 kal.gdvilLeGdLGaGKTtlvrglakal 43
                +a+ g++++L G+ G+GKTtl   lak  
  KKY21364.1 67 HAVaGELVALMGPSGSGKTTLLNVLAKRK 95
                3334789***************9999865 PP

>> NTPase_P4  ATPase P4 of dsRNA bacteriophage phi-12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.033        20     111     130 ..      71      90 ..      58     101 .. 0.74
   2 ?    4.8   0.0     0.023        14     192     223 ..     211     242 ..     208     256 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.033
                 SEEEEEEESTTSSHHHHHHT CS
   NTPase_P4 111 sGlvvvvGktgsGkskaLne 130
                   lv+++G +gsGk+  Ln 
  KKY21364.1  71 GELVALMGPSGSGKTTLLNV 90 
                 45899**********99995 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.023
                 BCCCCBHHHHHHHHHHHHHHHHTT-EEEEEE- CS
   NTPase_P4 192 ssGGisaalydlLtdisnlaaelgvvvvaavn 223
                 +sG  saa y++++ i  +a ++ ++v+a++ 
  KKY21364.1 211 TSGLDSAASYEVMSYIKTIAQQYRIIVIASIH 242
                 56667999**********************96 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00035      0.21     131     152 ..      73      94 ..      23     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00035
       T2SSE 131 lilvsGgTgsGKttllyallke 152
                 l+ + G+ gsGKttll++l k 
  KKY21364.1  73 LVALMGPSGSGKTTLLNVLAKR 94 
                 45678************98765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00067       0.4       3      30 ..      72     102 ..      70     131 .. 0.80
   2 ?   -2.1   0.0       6.3   3.8e+03      64      75 ..     201     212 ..     189     243 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00067
      AAA_14   3 kilvitGaRrvGKTtllkqlikell...vkk 30 
                 ++++++G+  +GKTtll+ l+k++    ++ 
  KKY21364.1  72 ELVALMGPSGSGKTTLLNVLAKRKAaakART 102
                 6789****************99988655444 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 6.3
      AAA_14  64 kktylflDEiqe 75 
                 + ++lflDE   
  KKY21364.1 201 NPKILFLDEPTS 212
                 567888888554 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00064      0.38       5      22 ..      74      91 ..      71     138 .. 0.87
   2 ?   -2.6   0.0       6.5   3.9e+03      54      75 ..     221     242 ..     196     245 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00064
      AAA_24  5 iliyGpsgiGKTtlakel 22
                ++++Gpsg+GKTtl++ l
  KKY21364.1 74 VALMGPSGSGKTTLLNVL 91
                689***********9877 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.5
      AAA_24  54 devvelaaeladyktlviDtid 75 
                 + + ++++  ++y+++vi +i 
  KKY21364.1 221 EVMSYIKTIAQQYRIIVIASIH 242
                 5566778889999999998875 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00064      0.38      22      55 ..      73     106 ..      52     132 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00064
                 EEEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEE CS
      NB-ARC  22 vvalvGmgGvGKttlakqilnksdevegrFdsva 55 
                 +val+G  G+GKttl++   +  +  + r +s++
  KKY21364.1  73 LVALMGPSGSGKTTLLNVLAKRKAAAKARTESHI 106
                 79*************9887777555555655555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00061      0.37      21      39 ..      73      91 ..      70      92 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00061
      AAA_23 21 ltlItGpNGaGKTTildAi 39
                l+++ Gp G+GKTT+l+ +
  KKY21364.1 73 LVALMGPSGSGKTTLLNVL 91
                67899***********865 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1    0.0018       1.1       2      22 ..      74      94 ..      73     105 .. 0.87
   2 ?   -0.9   0.0       2.6   1.5e+03      49      74 ..     185     210 ..     168     228 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0018
                EEEE--SSSSHHHHHHHGGGG CS
       AAA_5  2 vlLvGppGtgKselaerlaaa 22
                v L Gp+G+gK++l   la++
  KKY21364.1 74 VALMGPSGSGKTTLLNVLAKR 94
                569************999986 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.6
                 ........--------G-SEEEEESG CS
       AAA_5  49 ngttslvdsplvraaregeilvlDEv 74 
                 +g+++++ s++ + +++++il+lDE 
  KKY21364.1 185 SGGQKRRLSVASQLVTNPKILFLDEP 210
                 56677777788888899*******95 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   0.00053      0.32       7      41 ..      68     102 ..      62     246 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00053
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvk 41 
                 a++ ++++++++ G+GKT++l+   +   +++ + 
  KKY21364.1  68 AVAGELVALMGPSGSGKTTLLNVLAKRKAAAKART 102
                 678899***************99888776666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.48
# Mc/sec: 3458.81
//
Query:       KKY21365.1  [L=714]
Description: putative capsule-associated protein cap1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-40  138.6   0.1    3.1e-40  137.3   0.0    1.7  2  CDO_I            Cysteine dioxygenase type I
    8.6e-18   64.4   8.9    5.4e-15   55.2   6.4    3.1  2  Glyco_transf_90  Glycosyl transferase family 90
      0.007   15.8   0.0      0.014   14.9   0.0    1.4  1  PCO_ADO          PCO_ADO


Domain annotation for each model (and alignments):
>> CDO_I  Cysteine dioxygenase type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.3   0.0   5.1e-44   3.1e-40      24     166 ..      34     181 ..      23     185 .. 0.92
   2 ?   -3.9   0.1       1.2   7.1e+03      21      48 ..     521     547 ..     517     551 .. 0.68

  Alignments for each domain:
  == domain 1  score: 137.3 bits;  conditional E-value: 5.1e-44
                 TSS---HHHHHHHHHHS---HHHHGGG----SSS.-EEEEE.-GGGT-EEEEEEE-TT-B--EE--TT-EEEEEEEES-EEEEEE----S...S----- CS
       CDO_I  24 rekavdveevaslveayksdaveWaklakfdpek.ytrnlv.agngksellllcWgpGtassvHDHtdsvgalkllaGeLkEtkfAwalk...rleesd 117
                   + vd e +++++ +y sda+eW+++a  dp++ ytrnlv  gngks+ll+l W+pG+ s vHDH+++++++k+l+G L+E  +  ++      ++++
  KKY21365.1  34 DSDDVDPEYIQEIMRSYVSDAAEWRRFALADPSRnYTRNLVdEGNGKSNLLVLVWTPGKESPVHDHANAHCVMKILKGSLTEKLYTMPEAnadPPKPLQ 132
                 567889999**********************9865***************************************************9998333456789 PP

                 EEEEEE--TT-EEEE-TTT-EEEEEES-SSS-EEEEEEEES--SEEEEE CS
       CDO_I 118 ivdekrllsngtayvndelglHrveNlSsdegAVSlHlYaPPldtiray 166
                 +  e ++++n+++y+ d++glH++ N+S ++ A+SlHlY+PP    + +
  KKY21365.1 133 KTRETVYGENEVTYISDKIGLHKICNTSAEDYAISLHLYTPPHAARHGF 181
                 99999*************************************9877666 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.2
                 HHTTSS---HHHHHHHHHHS---HHHHG CS
       CDO_I  21 ellrekavdveevaslveayksdaveWa 48 
                 +l+ +k    ++ a+++e+  s++ +W+
  KKY21365.1 521 QLFIQKINKLDS-AKVLERTSSEPEQWT 547
                 555555555554.667779999999997 PP

>> Glyco_transf_90  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00027       1.6      71      99 ..     301     329 ..     294     339 .. 0.80
   2 !   55.2   6.4     9e-19   5.4e-15     104     326 ..     453     706 ..     433     711 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00027
  Glyco_transf_90  71 LlrkypgklpDlelmfncdDrPvvkkkdy 99 
                      ++ ++   lpD+++ fn++D P v +++ 
       KKY21365.1 301 MISSFVQYLPDMDVAFNVHDEPRVVMQHD 329
                      566667789*************9977654 PP

  == domain 2  score: 55.2 bits;  conditional E-value: 9e-19
  Glyco_transf_90 104 aappPlfsycgdeetlDivfPdwsfwgwpevnikrwslllkelkegnkkvkweerepyaywkGnpsvaetReeLlkcnrskkelvdarltkq.. 195
                      ++  P+fs ++ ++  Di++P   +w   e    +++         +  v+we+++p  yw+G+ +   +R+   + ++++    +  + k   
       KKY21365.1 453 HELFPVFSQSKVSSFQDILYPSPWYW--VER--VPYK--------PRLDVEWEHKHPSLYWRGSTTGGFSRDGGWRRQHRQLFIQK--INKLds 532
                      45789999999999999999965455..332..1222........223569*************9988877776665555432222..222223 PP

  Glyco_transf_90 196 ...........................................dekkeskegvkessledqckhkYkiyieGvaasvsekyilacdslvllvkp 246
                                                                 d++ke+ e v  ++  +  + kY + i+G a s +    l+c+slv +  +
       KKY21365.1 533 akvlertssepeqwtekevprqtmndlfdvkftyigqcdpgdcDAQKEYFEVVPPIDQYNAYQWKYLLDIDGNAFSGRYYSFLLCKSLVYKL-A 625
                      455555999********************************99999999999999**********************************987.5 PP

  Glyco_transf_90 247 eyydffsreLkplehYvPiks..kdklrdlkeavdwgnahdekaqeiaeegseFireeLkmddvydYmfhLlteYakllkyk 326
                       + ++  + Lk+++hY+P+    ++ ++ l+++ d  ++ + +a++ia  g++++ + L+ +d+  ++f+Ll eY++++  +
       KKY21365.1 626 IFREWHDEWLKAWVHYIPLGLkgDEYVETLRYL-DRDETGQVEAKQIADYGRSWASNVLRKEDMEAWYFRLLLEYGRVMDNN 706
                      8999**************866004446666664.667777889*********************************998765 PP

>> PCO_ADO  PCO_ADO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.3e-06     0.014      46     107 ..      83     143 ..      77     186 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.3e-06
     PCO_ADO  46 lgvFvlppgaviPLHdHPgMtvlskllyGslhiksydwveesetseekseklrlaklvsdee 107
                 l v v  pg+  P HdH + + + k+l Gsl  k y+  e++ + ++  +k+r+++   ++e
  KKY21365.1  83 LLVLVWTPGKESPVHDHANAHCVMKILKGSLTEKLYTMPEANADPPKPLQKTRETVYG-ENE 143
                 56778899999*************************9999776666665555554433.333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.49
# Mc/sec: 4401.41
//
Query:       KKY21366.1  [L=367]
Description: putative gtp binding [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-39  133.4   1.3    5.1e-39  132.6   0.3    2.0  2  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
    7.3e-24   83.6   0.2    1.9e-23   82.3   0.2    1.8  1  TGS           TGS domain
    3.4e-21   75.5   0.1      1e-20   73.9   0.0    1.8  2  MMR_HSR1      50S ribosome-binding GTPase
    9.2e-10   38.3   0.1    4.3e-09   36.1   0.0    2.0  2  FeoB_N        Ferrous iron transport protein B
    0.00025   21.1   0.2      0.064   13.3   0.0    2.4  2  Dynamin_N     Dynamin family
    0.00061   19.4   0.1        8.4    5.9   0.0    3.9  3  GTP_EFTU      Elongation factor Tu GTP binding domain
       0.01   14.9   0.1      0.023   13.7   0.1    1.6  1  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
  ------ inclusion threshold ------
       0.02   14.2   0.0      0.032   13.6   0.0    1.2  1  AIG1          AIG1 family
      0.022   14.2   0.1        2.2    7.7   0.0    2.3  2  Arf           ADP-ribosylation factor family
       0.12   12.3   0.4        5.3    6.9   0.0    2.7  3  RsgA_GTPase   RsgA GTPase
       0.16   12.2   0.1        1.1    9.5   0.0    2.3  3  AAA_22        AAA domain


Domain annotation for each model (and alignments):
>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   0.3   3.1e-42   5.1e-39       1     106 []     185     291 ..     185     291 .. 0.98
   2 ?   -2.0   0.0       2.1   3.5e+03      32      52 ..     307     328 ..     305     338 .. 0.73

  Alignments for each domain:
  == domain 1  score: 132.6 bits;  conditional E-value: 3.1e-42
  MMR_HSR1_Xtn   1 kgGikitstvkltkldeetvkkilkeykihnaevliredvtvDdlidvieg.nrvYipclyvlNKiDlisleeldelarepnsvviSaekelnldeL 96 
                   kgGi it+tv+lt++d++++k+++ eyki +a++ ir+d+t+Ddlid++e  +r+Yip++y+lNKiD+is+eeld l+r pn+++iS+e+++n+deL
    KKY21366.1 185 KGGIAITNTVPLTHIDHDEIKAVMGEYKISSADIAIRCDATIDDLIDILEAkSRSYIPVIYALNKIDAISIEELDLLYRIPNACPISSEHGWNVDEL 281
                   69***********************************************6549******************************************** PP

  MMR_HSR1_Xtn  97 kekiweeLnL 106
                   +e++we+L+L
    KKY21366.1 282 LEQMWEKLQL 291
                   ********97 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.1
  MMR_HSR1_Xtn  32 aevlir.edvtvDdlidviegn 52 
                   a v++r + +tv d+ ++i + 
    KKY21366.1 307 APVVLRkNACTVKDFCNAIHKT 328
                   5566663668999999998765 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.2   1.2e-26   1.9e-23       2      60 .]     293     366 ..     292     366 .. 0.99

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 1.2e-26
                 EEEE.TTSSEEE......EETTB-.HHHHHHHHSTTHHHHEEEEEECS.......EEEETTSBB-SSEEEEEEE CS
         TGS   2 rvyt.PdGkvpd......lprgat.veDfAykIhrslakkfiyAlVnG.......qrvgldhvLedgdvveIvt 60 
                 r+yt P+Gk+pd      l+++a+ v+Df+++Ih++++++f++A+V G       qrvgldh+L d+d+++I++
  KKY21366.1 293 RIYTkPKGKQPDytapvvLRKNACtVKDFCNAIHKTIVDQFRIAIVYGrsvkhqpQRVGLDHELADEDIITIIK 366
                 8***********************************************************************97 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.0   6.4e-24     1e-20       2     113 ..      66     181 ..      65     182 .. 0.82
   2 ?   -1.8   0.0         2   3.3e+03      90     114 .]     226     249 ..     187     249 .. 0.61

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 6.4e-24
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETTTTCSHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlillvvdaseeklkpldeelee 99 
                 ++++G p vGKStL+++ltg++++++++ +tT++++ g+v ++g +i+++D+pG+i+ga+++kg g+++ a+ + ++li++v+d++ + l+++ + +e+
  KKY21366.1  66 IGFIGFPSVGKSTLMSRLTGQHSEAAAYEFTTLTTVPGQVMYNGAKIQILDLPGIIQGAKDGKGRGRQVIAVAKtCHLIFIVLDVN-KPLTDK-KVIEA 162
                 89*********************************************************************99978********87.545433.33332 PP

                 HHHH.....TTSEEEEEEE CS
    MMR_HSR1 100 llee.....akkplilvln 113
                  le      +k+p  +v++
  KKY21366.1 163 ELEGfgiriNKEPPNIVFK 181
                 2222344466666666665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2
                 SHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  90 lkpldeeleelleeakkplilvlnk 114
                 +++l  ++ e ++++ +p+i++lnk
  KKY21366.1 226 IDDL-IDILEAKSRSYIPVIYALNK 249
                 3333.44444445577788888887 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   2.6e-12   4.3e-09       3      58 ..      66     121 ..      64     152 .. 0.90
   2 ?   -0.8   0.0      0.61   9.9e+02     106     122 ..     241     257 ..     229     264 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 2.6e-12
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----S CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGiY 58 
                 + ++G p vGk+tl+ +ltg++++ + +  +t     g++ ++g +++i+DlPGi 
  KKY21366.1  66 IGFIGFPSVGKSTLMSRLTGQHSEAAAYEFTTLTTVPGQVMYNGAKIQILDLPGII 121
                 7789**************************************************95 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.61
                 SSEEEEEETHHHHHHTT CS
      FeoB_N 106 vpvvlalnmideaekkg 122
                 +pv+ aln+id+++ ++
  KKY21366.1 241 IPVIYALNKIDAISIEE 257
                 6899999*999987655 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.1     0.009        15       1      23 [.      66      88 ..      66     108 .. 0.81
   2 !   13.3   0.0   3.9e-05     0.064     101     146 ..     110     158 ..     104     166 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.009
                EEEEEBTTTTHHHHHHHHHTS-- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedi 23
                i ++G  S GKS+++  L+g++ 
  KKY21366.1 66 IGFIGFPSVGKSTLMSRLTGQHS 88
                6789999*************985 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 3.9e-05
                 -SEEEEE---B-SSSGTTS...HHHHHHHSTTEEEEEEEETTS-CCC-C CS
   Dynamin_N 101 kgltlvDlPGldsvnkrdq...elvkeyikkadiilavtsanhdlsnse 146
                  ++ ++DlPG+++ +k  +   + v   +k +++i+ v++ n+ l++++
  KKY21366.1 110 AKIQILDLPGIIQGAKDGKgrgRQVIAVAKTCHLIFIVLDVNKPLTDKK 158
                 5799**********999999999999999***************99775 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0051       8.4       5      29 ..      65      89 ..      62     156 .. 0.89
   2 ?    4.6   0.0     0.013        21     119     140 ..     237     259 ..     228     264 .. 0.79
   3 ?    3.9   0.0     0.021        33     170     192 ..     267     289 ..     261     291 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0051
                EEEEEESTTSSHHHHHHHHHHHTTS CS
    GTP_EFTU  5 nigiighvDhGKtTLtdrLlyktga 29
                 ig+ig    GK+TL+ rL+ ++++
  KKY21366.1 65 SIGFIGFPSVGKSTLMSRLTGQHSE 89
                6899999999*********976655 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.013
                 HHTTTEEEEEEESCGST.HHHHH CS
    GTP_EFTU 119 lkegvpiivfiNKmDrl.kaelk 140
                 ++  +p+i ++NK+D + ++el+
  KKY21366.1 237 SRSYIPVIYALNKIDAIsIEELD 259
                 566799**********9767765 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.021
                 EEEEBTTTTBTHHHHHHHHHHHS CS
    GTP_EFTU 170 vvfgSalkgegvktllealvell 192
                  +++S+ +g++v++lle++ e+l
  KKY21366.1 267 ACPISSEHGWNVDELLEQMWEKL 289
                 689**************998876 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   1.4e-05     0.023      25      53 ..      60      87 ..      57     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.4e-05
                G-S-SEEEEEEE-TTSSHHHHHHHHHHHH CS
        MeaB 25 kaGraqvvGltGvPGaGkstlvealglel 53
                ++G a  +G+ G+P +Gkstl+++l+ + 
  KKY21366.1 60 RTGVA-SIGFIGFPSVGKSTLMSRLTGQH 87
                55555.59*****************8765 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     2e-05     0.032      11     118 ..      74     174 ..      66     189 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2e-05
                 SSHHHHHHHHHTS--SS--TTTS--.-SS-EEEEEEETTEEEEEEE--SCCCTTCCHHCHHHHHHHHHHHCTT-ESEEEEEEETT.B-SHHHHHHHHHH CS
        AIG1  11 nGkSaTgNsilgkkaFesklsaqsv.tkkcqkksrtwdgkkinViDTPglfdlsvsadkiskeivrclllseegihalllvlslg.rfteedekalktl 107
                 +GkS+    + g++   s+++a +  t +    + + +g ki++ D Pg+++  ++ +   ++++    ++++  h + +vl+++  +t  d+k++++ 
  KKY21366.1  74 VGKSTLMSRLTGQH---SEAAAYEFtTLTTVPGQVMYNGAKIQILDLPGIIQGAKDGKGRGRQVIA---VAKT-CHLIFIVLDVNkPLT--DKKVIEAE 163
                 55555555555554...33333333044444556699*****************999988888884...5555.9**********6677..99999999 PP

                 HHHHCGGGGGG CS
        AIG1 108 kelFGekilky 118
                  e FG +i k 
  KKY21366.1 164 LEGFGIRINKE 174
                 99999988765 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0014       2.2      18      67 ..      67     119 ..      60     125 .. 0.81
   2 ?    4.2   0.0     0.016        25      88     131 ..     212     256 ..     195     290 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0014
                 EEEESTTSSHHHHHHHHHHSSCEE...CSSSSSEEEEEEEETTEEEEEEEE-S CS
         Arf  18 lllGLDnaGKtTilkklkleelvt...tvPTigfnveeleiknlkftvwDvGG 67 
                  ++G  + GK+T++ +l+ ++ +       T+     ++++++ k+++ D+ G
  KKY21366.1  67 GFIGFPSVGKSTLMSRLTGQHSEAaayEFTTLTTVPGQVMYNGAKIQILDLPG 119
                 5799999**********877665533356677777789************987 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.016
                 EEETT-CT.THHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS CS
         Arf  88 vvDsadre.RleeakeeLkalleeeelkevallvlaNKqDlpeal 131
                  + sad   R + + ++L  +le +  + ++++   NK+D+ +  
  KKY21366.1 212 KISSADIAiRCDATIDDLIDILEAKSRSYIPVIYALNKIDAISIE 256
                 5667776559999999************************76543 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0032       5.3     104     124 ..      68      88 ..      59     122 .. 0.80
   2 ?   -2.7   0.0       2.9   4.8e+03      19      57 ..     144     184 ..     136     189 .. 0.68
   3 ?    2.4   0.0     0.079   1.3e+02      41      65 ..     235     258 ..     219     291 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0032
                  EECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase 104 lvGqSGvGKStLinallpele 124
                  ++G   vGKStL+ +l+++++
   KKY21366.1  68 FIGFPSVGKSTLMSRLTGQHS 88 
                  889899***********9754 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.9
                  EEEEEESTTTT--HHHHHHHH..HHHHHTT-EEEEEEE-GG CS
  RsgA_GTPase  19 llivvslkepelslnlldrfL..vlaeekgiepvivlnKiD 57 
                  ++iv+ +++p ++++ ++  L  + +  ++ +p iv+ K D
   KKY21366.1 144 IFIVLDVNKPLTDKKVIEAELegFGIRINKEPPNIVFKKKD 184
                  67777888777777777777622234556667777777777 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.079
                  HHHHTT-EEEEEEE-GGG--HHHHH CS
  RsgA_GTPase  41 laeekgiepvivlnKiDlleeeeel 65 
                  +  ++ i+++ +lnKiD ++ ee l
   KKY21366.1 235 AKSRSYIPVIYALNKIDAISIEE-L 258
                  445566888889*******9988.3 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0    0.0007       1.1      10      35 ..      68      93 ..      61     149 .. 0.79
   2 ?   -0.7   0.0      0.95   1.5e+03      74     123 ..     225     270 ..     216     278 .. 0.74
   3 ?   -2.3   0.0       3.1     5e+03      44      61 ..     309     326 ..     276     332 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0007
      AAA_22 10 vtGesGtGKTtllrrlleqldeeaka 35
                 +G + +GK+tl+ rl+ q+ e+a+ 
  KKY21366.1 68 FIGFPSVGKSTLMSRLTGQHSEAAAY 93
                5899***************9765443 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.95
      AAA_22  74 sseellealeqalraravielliiDEaqhlrseealeeLrsllnlsrkgv 123
                 + ++l++ le  +r++   ++  +  ++ + s e l  L ++ n   +++
  KKY21366.1 225 TIDDLIDILEAKSRSYIP-VIYALNKIDAI-SIEELDLLYRIPN--ACPI 270
                 556666777777777777.88888888999.8999999998888..5544 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3.1
      AAA_22  44 fvtlpsstsskdllrell 61 
                  v  ++ ++ kd+++++ 
  KKY21366.1 309 VVLRKNACTVKDFCNAIH 326
                 444455557888877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 2200.22
//
Query:       KKY21367.1  [L=386]
Description: hypothetical protein UCRPC4_g03805 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-14   51.7   0.1    1.1e-13   51.0   0.1    1.4  1  HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain


Domain annotation for each model (and alignments):
>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.1   6.3e-18   1.1e-13       2      64 ..      38     100 ..      37     102 .. 0.84

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 6.3e-18
                  HHHHHHHHHHHHHHC-CT---SCHHHHHHHHHHH.HHSSSCT-TT-S--CHHHHHHHHHTS--X CS
  HTH_Tnp_Tc5   2 pelEkaLleWirqlrergipitgelirekAqela.slaadlgepdfkaSkgWldrFkkRhglkr 64 
                  p++E+aLl W+++++++g++i++ ++rekA+++a s   ++  ++++  + Wl+rFk++++l  
   KKY21367.1  38 PDIERALLVWVQNQQKTGKSINDVALREKARKFAlSV-GNEEVQKKVNTHTWLERFKSKYNLGV 100
                  89*******************************9533.4444555666667*********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2460.43
//
Query:       KKY21368.1  [L=365]
Description: putative uridine nucleosidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-81  274.4   0.0    1.7e-81  274.1   0.0    1.0  1  IU_nuc_hydro  Inosine-uridine preferring nucleoside hydrolase


Domain annotation for each model (and alignments):
>> IU_nuc_hydro  Inosine-uridine preferring nucleoside hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.1   0.0   9.5e-86   1.7e-81       2     304 ..       6     348 ..       5     349 .. 0.85

  Alignments for each domain:
  == domain 1  score: 274.1 bits;  conditional E-value: 9.5e-86
                   EEEEEE--SHHHHHHHHHHHCTHTTEEEEEEEE-SSSS-HHHHHHHHHHHHHHHCTTT.S-EEEE-SS-SSSSS-SHH.HHTTTSS.TSS-.--SSH CS
  IU_nuc_hydro   2 kvilDtDpGiDDalAlllalaespeiellgittvaGnvsleqatrnalrvlealggrddipvyaGaekpllrekaaae.ihGedGl.gdvllpeper 96 
                   +v+lD+DpG+DDa+A+lla+ + pe+ellg++t++Gn+sle++t+nalrvlea+g r di vy+Ga++p++r +++a+ ihG++Gl g+ llp+++r
    KKY21368.1   6 PVWLDCDPGHDDAFAILLAAYH-PELELLGVSTIHGNASLEKTTKNALRVLEAIG-RPDILVYPGARRPFCRAPHHAPdIHGDSGLdGTDLLPQATR 100
                   8******************997.****************************7777.999**************666666*******77779988644 PP

                   CSCSSHHHHHHHHHHHHCHHTTTT.EEEEECS-SHHHHHHHHHTCCHHHHEEEEEEE---SS.....................S--SSSSSS-HHHH CS
  IU_nuc_hydro  97 kaesesavdalidaveaareypge.vtlvatGplTNiAlalrldpelakkvkrlviMGGaft.....................arGNvtpvaEfNif 171
                     +s +a++ ++d+ +a  ++p++  +++atG++TN+Al++++ p+l++++k + iMGGa++                     + GN tp+aEfNi+
    KKY21368.1 101 --KSIAACNPIYDIYQALMRQPAGkAWVIATGAMTNVALLFSTFPDLVDHIKGFNIMGGAIGngftdvplgpsfhdesgilrsRIGNYTPYAEFNIW 195
                   ..44556777777755545555555************************************************************************ PP

                   HSHHHHHHHHHTS-E....EEEE-HHHHTTSCHEECHHHHHHHHCST................CBHHHHHHHHHHHHHHHHHHHHH.SSEEE-HHHH CS
  IU_nuc_hydro 172 vDPeAAkiVlesapv...kitlvpldvthkvqalltseeveelaale................kglgafladllefyikaykeaeg.sdgaplhDpl 248
                   +DPe+A+  + + p    k+ ++pld+th  q ++++++++++ +++                ++l++++++ll+f++k+y+++++ ++g+plhDpl
    KKY21368.1 196 CDPESAESLFIN-PAlarKTMIAPLDLTH--Q-AFANKDIQHIVMYGekrhvflktsderpkpTKLRQMFHELLMFFAKTYADVFDlKEGPPLHDPL 288
                   **********64.3356799*********..8.78888888866666778889988877664444444***************************** PP

                   HHHHHH-G........GGEEE.EEEEEEEESSSSTTTTEEEEETSTTTTS--EEEEEEE-HHHHH CS
  IU_nuc_hydro 249 avavaldp........elvtt.krlavdveleggltrGrtvvdlrrlkkaknvkvatevdverfl 304
                   ava ++ +         ++++ +r++v+vel+g ++ Grt v    +k    v + +++d ++f+
    KKY21368.1 289 AVAFIFANdddeglkiPFFDEgERYKVEVELAG-PQIGRTKV----TKADDGVIIPKGFDGPKFW 348
                   ****87533444444444445589*******86.89999966....4667788889999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 2284.51
//
Query:       KKY21369.1  [L=265]
Description: putative 40s ribosomal protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      8e-25   87.2   0.1    4.3e-24   84.8   0.2    2.1  2  Ribosomal_S3_C  Ribosomal protein S3, C-terminal domain
    6.6e-12   45.1   0.1    1.2e-11   44.3   0.1    1.4  1  KH_2            KH domain
  ------ inclusion threshold ------
        0.1   13.1   0.0        0.2   12.2   0.0    1.5  1  UN_NPL4         Nuclear pore localisation protein NPL4
       0.15   11.8   0.1       0.34   10.7   0.0    1.5  2  Coilin_N        Coilin N-terminus


Domain annotation for each model (and alignments):
>> Ribosomal_S3_C  Ribosomal protein S3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.53   2.4e+03      20      34 ..      30      44 ..      11      49 .. 0.63
   2 !   84.8   0.2   9.6e-28   4.3e-24       2      83 .]     109     191 ..     108     191 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.53
                    HHHHHCC-SEEEEEE CS
  Ribosomal_S3_C 20 rramkagakGikiqv 34
                    r++ ++g  G++++v
      KKY21369.1 30 RELAEEGYSGVEVRV 44
                    333444555555544 PP

  == domain 2  score: 84.8 bits;  conditional E-value: 9.6e-28
                     HHHHHTT--HHHHHHHHHHHHHHCC-SEEEEEEEC-SS.TTT--EEEEEEC----..TCHHHH-EEEEEEEEETTEEEEEEEEE CS
  Ribosomal_S3_C   2 aeqlekrvsfRramkkairramkagakGikiqvsGrLggaeiarsekykeGrvpl..htlradidyavaeaktkyGiiGvkVwI 83 
                     +++l +++++Rra++ ++r +m++gakG++++vsG+L+ a +a+s+k+++G +++  +++++ id+a++++ +++G++G+kV+I
      KKY21369.1 109 RYKLLNGLAVRRACYGVLRFIMESGAKGCEVVVSGKLR-AARAKSMKFTDGFMIHsgQPAKDFIDTATRHVLLRQGVLGIKVKI 191
                     6799**********************************.*******************************************98 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.1   2.6e-15   1.2e-11       1      76 [.      23      97 ..      23      99 .. 0.96

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 2.6e-15
                HHHHHHHHHTECETEEEEEEECCSCEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTCEEEEEEEETTT CS
        KH_2  1 eipeslaveikkagvskveIertanrviiviresqpgivIGkgGsnikkigkelrkdieklegkkVklnivkVkkp 76
                e++e++++e++++g+s+ve++ t+  + i+ir+ + + v+G +G++i+++++ ++k++ k+ +  V+l+  kV+++
  KKY21369.1 23 ELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGRRIRELTSLIQKRF-KFPENSVSLYAAKVQNR 97
                6899****************99************************************.6*************985 PP

>> UN_NPL4  Nuclear pore localisation protein NPL4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.5e-05       0.2      23      56 ..      66      99 ..      49     114 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.5e-05
                TSBHHHHHHHHHHHSS-STTT-EEESSTTCGCCC CS
     UN_NPL4 23 kstlktllekvaeelkfsengfslylernkttel 56
                   +++l +++++++kf+en  sly  + +++ l
  KKY21369.1 66 GRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGL 99
                566899*******************988877776 PP

>> Coilin_N  Coilin N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.5e-05      0.34      25      52 ..      64      90 ..      57      94 .. 0.85
   2 ?   -3.0   0.1       1.3   5.7e+03      98      98 ..     231     231 ..     187     257 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.5e-05
    Coilin_N 25 esckvvkdLaqhirklFklkrpsillLy 52
                e+ + + +L ++i+k+Fk+ ++  ++Ly
  KKY21369.1 64 EQGRRIRELTSLIQKRFKFPEN-SVSLY 90
                56789***************99.77777 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.3
    Coilin_N  98 a 98 
                  
  KKY21369.1 231 G 231
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1803.90
//
Query:       KKY21370.1  [L=602]
Description: putative phenylalanyl-trna beta subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-49  165.7   0.0    1.5e-48  165.0   0.0    1.3  1  tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM 
    1.7e-32  111.5   0.4    5.2e-31  106.7   0.1    2.4  2  PhetRS_B1        Phe-tRNA synthetase beta subunit B1 domain
    9.2e-26   90.6   0.0    1.6e-25   89.8   0.0    1.4  1  B3_4             B3/4 domain
    3.5e-18   65.6   0.0    3.8e-16   59.1   0.0    2.6  2  B5               tRNA synthetase B5 domain


Domain annotation for each model (and alignments):
>> tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.0   0.0   3.5e-52   1.5e-48       1     214 []     373     598 ..     373     598 .. 0.96

  Alignments for each domain:
  == domain 1  score: 165.0 bits;  conditional E-value: 3.5e-52
  tRNA_synthFbeta   1 IpstlPkapttegelnkeqklrrklrdllagaGlnEvitysfvsekeldkll.eddderkavelanPlsedqsvlRtsLlpglLevlarNlarg 93 
                      +p ++P+ + t +++   +kl++ +r + a+aG++Ev+   ++s++e+  +l ++dd  +av+lanP + +++v+RtsLlpglL+++++N +++
       KKY21370.1 373 LPRSFPSKSGTVAQPLAINKLSDIVRVEAAMAGWSEVMPLILCSHDENFSWLnREDDGTTAVRLANPKTLEYQVVRTSLLPGLLKTIRENKHHS 466
                      6999************************************************9999************************************** PP

  tRNA_synthFbeta  94 nedvrlFEigkvflkd.seeelpeeerhlaivltgkreeeswsekaravdfydlkgivealleslgiek...................vefepa 167
                      ++ +++FE+++v +kd s e++ ++erh+a++++gk+            +f+ ++g++++++  l+                      +++++ 
       KKY21370.1 467 VP-MKIFEVSDVAFKDlSLERKSRNERHFAAAWYGKT-----------SGFEVVHGLLDRIMLMLRT-AfvtkeeglgdsnlqvagfrYWIQEV 547
                      **.**********************************...........*****************99.446789******************** PP

  tRNA_synthFbeta 168 ehpalhpgrsAeikv....dgkevGvlGelhpevleafdlkqrvyvfEldl 214
                      ++++++pg++A+i++    ++ +vGv+G lhp vle+f+l+++v+ +E++l
       KKY21370.1 548 DDKTFFPGHAASIHIgvgrNEYVVGVFGILHPTVLEKFELRYPVSTLEMNL 598
                      ***************7654455***************************97 PP

>> PhetRS_B1  Phe-tRNA synthetase beta subunit B1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.7   0.1   1.2e-34   5.2e-31       1      83 []       1      83 [.       1      83 [. 0.99
   2 ?    2.5   0.0     0.038   1.7e+02      46      76 ..     333     363 ..     305     369 .. 0.83

  Alignments for each domain:
  == domain 1  score: 106.7 bits;  conditional E-value: 1.2e-34
   PhetRS_B1  1 MPtisvkkeaLfkalgkelteeeledllfefGlElDeiveeeekkkadkkseeviykidipAnryDLLcleglaralkvFlgk 83
                MPti+v+k+aLfk+lg+e+t++e+++l+fefG+ElDe ++e+e+   +  +e   +ki+ipAnryD+Lc+eg++ +l+++++k
  KKY21370.1  1 MPTIGVDKAALFKELGQEYTTKEFDELCFEFGIELDEDTTESERPIINGVQEPPQLKIEIPANRYDMLCFEGISLMLNIYREK 83
                ********************************************************************************986 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.038
   PhetRS_B1  46 kadkkseeviykidipAnryDLLcleglara 76 
                 ++ +k++++i+ i +p  r D+L    +++ 
  KKY21370.1 333 ATPSKTDKNIIDIAVPPTRADVLHQADIMED 363
                 56678999**************988777665 PP

>> B3_4  B3/4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0   3.6e-29   1.6e-25       2     174 .]     112     273 ..     111     273 .. 0.93

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 3.6e-29
                 SSEEEEEEEES--.-----HHHHHHHHHTT-----HHHHHHHHHHHHHT-.....-EEEEEGGGTBTEEE.EEE--TTEEEEBTTS-EEEE-T...... CS
        B3_4   2 cpryaarvlrgvkktapspewlqrrLrragirpinnvVDitNyvmlelgq.....PlhafDldkiqgdiv.vrlakegeklvtldgkerelde...... 88 
                 ++++aa++lr+v++t +                +++++ ++++++++l++     +++++Dld++qg+++  +l+++++ + +l+++ +e+++      
  KKY21370.1 112 RQYAAAAILRNVTFTPER---------------YESFIGLQDKLHQNLARqrtlvAIGTHDLDTVQGPFTyEALPPSEFGFKPLNQQ-KEMTAeemmkf 194
                 6899999******99999...............*********************************999977788888899999955.55544469999 PP

                 ..................TSEEEETEEEEE.EETTTEEBTTTB--TT--EEEEEEEE--HHHHHHHHHHTT---HHHHHHHH---TTTHHHHHHHHHHH CS
        B3_4  89 ..................edlviadsekpv.slagvmggeeskvsedTknvfleaaafdpvsirktarrlglrseaskrfergvdpekleaaldraval 168
                                   +++vi+d++++v s+++++++++sk+s +T+nvf+e++a                          +d++kle +++ +va+
  KKY21370.1 195 yetdrhigrylhiikdspVYPVIFDANRVVcSMPPIINSDHSKISTKTRNVFIECTA--------------------------TDRTKLELVINIMVAM 267
                 999999999************************************************..........................**************** PP

                 HHHHH- CS
        B3_4 169 lselcg 174
                 +s++c+
  KKY21370.1 268 FSQYCE 273
                 *****6 PP

>> B5  tRNA synthetase B5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.016        74      12      52 ..      15      68 ..       6      73 .. 0.67
   2 !   59.1   0.0   8.6e-20   3.8e-16       3      67 .]     304     370 ..     302     370 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.016
                HTS---HHHHHHHHHHTT-E.EESSTT.............CEEEE--TT-TT-- CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxx RF
          B5 12 lGidlseeeiikiLkrlgceriekdkd.............lllVtvPswRsDle 52
                lG +++++e  ++  + g+e +e++++             +l++++P+ R+D++
  KKY21370.1 15 LGQEYTTKEFDELCFEFGIELDEDTTEserpiingvqeppQLKIEIPANRYDML 68
                66666666666666667776433333345555555555559***********97 PP

  == domain 2  score: 59.1 bits;  conditional E-value: 8.6e-20
                 EEHHHHHHHHTS---HHHHHHHHHHTT-E...EESSTTCEEEE--TT-TT--SHHHHHHHHHHHH-G CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
          B5   3 lrvekinkllGidlseeeiikiLkrlgce..riekdkdlllVtvPswRsDlereeDliEEvaRlyGY 67 
                 ++v++in+++G++ls++ei+k+L+r+ ++   +++dk+ +++ vP++R D+++++D++E+va+ yG+
  KKY21370.1 304 AEVDYINECCGLSLSPQEICKMLTRMSYHatPSKTDKNIIDIAVPPTRADVLHQADIMEDVAISYGF 370
                 789************************98666789999****************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3972.02
//
Query:       KKY21371.1  [L=612]
Description: putative protein phosphatase pp2a regulatory subunit a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-42  140.3  12.6     0.0042   17.2   0.0   13.1 13  HEAT            HEAT repeat
    1.2e-36  124.9   4.8    1.1e-10   41.7   0.0    8.3  8  HEAT_2          HEAT repeats
    1.1e-14   54.5   4.5     0.0063   17.0   0.0    8.9  9  HEAT_EZ         HEAT-like repeat
    3.4e-11   43.4   7.9     0.0018   18.3   0.0    6.0  7  Cnd1            non-SMC mitotic condensation complex subunit 
    9.1e-11   41.0   1.0      4e-07   29.0   0.1    4.4  4  Adaptin_N       Adaptin N terminal region
    1.2e-10   41.9   0.7     0.0015   19.1   0.1    7.2 10  Vac14_Fab1_bd   Vacuolar 14 Fab1-binding region
    8.2e-07   29.2   2.6        1.4    9.1   0.0    4.7  4  RTP1_C1         Required for nuclear transport of RNA pol II 
    1.4e-05   24.8   0.6       0.68    9.5   0.0    4.9  5  CLASP_N         CLASP N terminal
     0.0073   15.0   3.6        1.1    7.8   0.1    3.6  4  Ecm29           Proteasome stabiliser
  ------ inclusion threshold ------
      0.011   14.3   0.7       0.51    8.8   0.0    2.4  2  Proteasom_PSMB  Proteasome non-ATPase 26S subunit
      0.067   13.4   0.1         17    5.7   0.0    3.6  3  TetR_C_16       Tetracyclin repressor-like, C-terminal domain
      0.085   12.7   0.1       0.44   10.4   0.0    2.2  2  RhoGAP          RhoGAP domain
       0.86    9.7   8.5          2    8.6   0.0    4.8  7  Arm             Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       3.3   4.6e+03       9      28 ..      20      39 ..      14      41 .. 0.80
   2 !   10.2   0.0   0.00056      0.77      11      30 ..      98     118 ..      89     119 .. 0.80
   3 !   11.6   0.0    0.0002      0.27       8      29 ..     173     194 ..     167     196 .. 0.88
   4 !   11.2   0.0   0.00026      0.35       2      29 ..     206     233 ..     205     235 .. 0.94
   5 !   17.2   0.0   3.1e-06    0.0042       1      29 [.     246     274 ..     246     276 .. 0.91
   6 !   15.3   0.0   1.3e-05     0.017       1      28 [.     285     312 ..     285     315 .. 0.86
   7 ?    6.0   0.0     0.012        17       1      28 [.     324     351 ..     324     354 .. 0.79
   8 !   13.1   0.0   6.6e-05     0.092       1      18 [.     363     380 ..     363     390 .. 0.91
   9 !   13.6   0.1   4.6e-05     0.063       1      29 [.     402     430 ..     402     432 .. 0.89
  10 !   11.6   0.0   0.00019      0.27       4      30 ..     444     470 ..     441     471 .. 0.90
  11 !    9.0   0.0    0.0014       1.9       1      30 [.     480     509 ..     480     510 .. 0.94
  12 !   10.9   0.0   0.00033      0.45       1      23 [.     519     541 ..     519     547 .. 0.91
  13 ?    4.3   0.0     0.044        61       3      21 ..     580     598 ..     578     600 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.3
                HT-SSHHHHHHHHHHHHHHH CS
        HEAT  9 lsDpspeVReaAakaLgala 28
                l++++   R +A+  L ++a
  KKY21371.1 20 LKHDDVLLRLNAIHRLSTIA 39
                78889999***999998887 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00056
                 -.SSHHHHHHHHHHHHHHHHC CS
        HEAT  11 D.pspeVReaAakaLgalaev 30 
                   ++p VR+ A+++L +++e+
  KKY21371.1  98 AiEEPLVRDKAVESLNKICEQ 118
                 4589***************97 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.0002
                 HHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAakaLgalae 29 
                 l +D+ p VR+ Aa++L+++++
  KKY21371.1 173 LVHDETPMVRRQAANNLAKFIK 194
                 569***************9986 PP

  == domain 4  score: 11.2 bits;  conditional E-value: 0.00026
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                 +Pl+++l  D+  +VR  ++  L a+ae
  KKY21371.1 206 IPLFQHLAGDDQDSVRLLTVDVLIAIAE 233
                 8*************************98 PP

  == domain 5  score: 17.2 bits;  conditional E-value: 3.1e-06
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 ll +l++ll D+s++VR+++a  + ++a+
  KKY21371.1 246 LLTALQNLLGDKSWRVRYMVADRFEKIAK 274
                 6889*****************99999987 PP

  == domain 6  score: 15.3 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 l+P+++kll+D+++eVR a+a  +  ++
  KKY21371.1 285 LVPAFVKLLKDSEAEVRTAVAGQIPGFC 312
                 79******************97666555 PP

  == domain 7  score: 6.0 bits;  conditional E-value: 0.012
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 ++  +  l sDps +VR+a    +  la
  KKY21371.1 324 IMGSIEDLVSDPSQHVRAALGTQISGLA 351
                 677889999*********9766666666 PP

  == domain 8  score: 13.1 bits;  conditional E-value: 6.6e-05
                 HHHHHHHHHT-SSHHHHH CS
        HEAT   1 llPlllkllsDpspeVRe 18 
                 llP++l++l+D+ p+VR 
  KKY21371.1 363 LLPMFLQMLKDEFPDVRL 380
                 89***************7 PP

  == domain 9  score: 13.6 bits;  conditional E-value: 4.6e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 llP++ +l +D s++VR a ++ +  la+
  KKY21371.1 402 LLPAITTLSEDRSWRVRLAIIEYIPLLAS 430
                 89*****************9998887776 PP

  == domain 10  score: 11.6 bits;  conditional E-value: 0.00019
                 HHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   4 lllkllsDpspeVReaAakaLgalaev 30 
                 l++ +l D+  ++ReaA ++L +l ev
  KKY21371.1 444 LCMAWLGDTVFSIREAATQNLKKLTEV 470
                 67899*******************997 PP

  == domain 11  score: 9.0 bits;  conditional E-value: 0.0014
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 ++P ++ + ++p+   R++++ a+ +la+v
  KKY21371.1 480 IVPKVVAMGQHPNYLYRMTTCFAISTLAPV 509
                 789999*99******************997 PP

  == domain 12  score: 10.9 bits;  conditional E-value: 0.00033
                 HHHHHHHHHT-SSHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAaka 23 
                 +lP+l kl sDp p++R ++ak+
  KKY21371.1 519 ILPILDKLVSDPIPNIRFNVAKS 541
                 89******************997 PP

  == domain 13  score: 4.3 bits;  conditional E-value: 0.044
                 HHHHHHHT-SSHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAa 21 
                 P l kl +D++ +VR+ A 
  KKY21371.1 580 PNLEKLQQDDDVDVRYFAT 598
                 8899988*********996 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.8   3.8e-07   0.00052       2      87 ..      14     112 ..      13     113 .. 0.83
   2 !    7.5   0.0    0.0039       5.4      33      60 ..      90     117 ..      64     148 .. 0.75
   3 !   17.9   0.0   2.2e-06     0.003       8      60 ..     173     233 ..     168     243 .. 0.83
   4 !   17.4   0.1   3.1e-06    0.0043       3      52 ..     249     305 ..     245     308 .. 0.65
   5 !   14.4   0.1   2.8e-05     0.039       1      70 [.     286     366 ..     286     369 .. 0.84
   6 !   41.7   0.0   8.3e-14   1.1e-10       2      88 .]     365     465 ..     364     465 .. 0.92
   7 !   11.1   0.0   0.00029       0.4      10      56 ..     489     543 ..     481     559 .. 0.76
   8 ?    2.9   0.0       0.1   1.4e+02       3      20 ..     580     597 ..     565     607 .. 0.63

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.8e-07
      HEAT_2   2 daLlqalendpdpevrraairaLg....rignpealpaLvelled..ed.pavRraaaeaLgai....gdpe....alpaLkellddddddvvReaAae 85 
                 ++L+  l ++ d  +r +ai+ L      +g++++++ L+++l+d  ed  +v  a  e Lg +    g p+     l+ L+ l++  ++++vR +A+e
  KKY21371.1  14 AVLIDEL-KHDDVLLRLNAIHRLStialALGPERTRDELIPFLDDsvEDeDEVLTALSEELGNFveyvGGPDyahvLLSPLENLAAI-EEPLVRDKAVE 110
                 689****.9***************777667899**********876766358999999****8877776666555479999998865.68999****** PP

      HEAT_2  86 aL 87 
                 +L
  KKY21371.1 111 SL 112
                 99 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0039
      HEAT_2  33 lpaLvellededpavRraaaeaLgaigd 60 
                 l  L +l+  e+p vR  a+e+L +i +
  KKY21371.1  90 LSPLENLAAIEEPLVRDKAVESLNKICE 117
                 6788999999*************99954 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 2.2e-06
      HEAT_2   8 lendpdpevrraairaLgrignp........ealpaLvellededpavRraaaeaLgaigd 60 
                 l++d+ p vrr+a+ +L+++  +        e +p++  l+ d+   vR   ++ L ai++
  KKY21371.1 173 LVHDETPMVRRQAANNLAKFIKEvptpivieEMIPLFQHLAGDDQDSVRLLTVDVLIAIAE 233
                 4599**************665554555777799***********************99976 PP

  == domain 4  score: 17.4 bits;  conditional E-value: 3.1e-06
      HEAT_2   3 aLlqalendpdpevrraairaLgrignp........ealpaLvellededpavRraaa 52 
                 aL ++l  d+++ vr+++++   +i+          +++pa+v+ll+d++++vR a+a
  KKY21371.1 249 ALQNLL-GDKSWRVRYMVADRFEKIAKAvddevvnrDLVPAFVKLLKDSEAEVRTAVA 305
                 333444.788888888888777744443333444447788888888888888888876 PP

  == domain 5  score: 14.4 bits;  conditional E-value: 2.8e-05
      HEAT_2   1 ldaLlqalendpdpevrraairaLgrignp........ealpaLvellededpavRraaaeaLg....aigdpealpaLkel 70 
                 ++a++++l +d++ evr a++ ++  + n         e++  + +l++d++ +vR+a  + ++     +g +e++++L+ +
  KKY21371.1 286 VPAFVKLL-KDSEAEVRTAVAGQIPGFCNLldrdtllnEIMGSIEDLVSDPSQHVRAALGTQISglapILGKEETIAHLLPM 366
                 58999*99.9***************666655666788899*******************99887444555889999999876 PP

  == domain 6  score: 41.7 bits;  conditional E-value: 8.3e-14
      HEAT_2   2 daLlqalendpdpevrraairaLg........rignpealpaLvellededpavRraaaeaL....gaigd...pealpaLkellddddddvvReaAae 85 
                 + +lq l +d++p+vr ++i  L         ++ ++++lpa++ l ed +++vR a++e++    +++g    +e l++L+++++ d++  +ReaA++
  KKY21371.1 365 PMFLQML-KDEFPDVRLHIISKLEhvnkvigiELLSQSLLPAITTLSEDRSWRVRLAIIEYIpllaSQLGVkffDEQLSSLCMAWLGDTVFSIREAATQ 462
                 6789999.9***************9999998888999***********************9966666888677899*********************** PP

      HEAT_2  86 aLa 88 
                 +L+
  KKY21371.1 463 NLK 465
                 996 PP

  == domain 7  score: 11.1 bits;  conditional E-value: 0.00029
      HEAT_2  10 ndpdpevrraairaLg........rignpealpaLvellededpavRraaaeaLg 56 
                 ++p++  r +++ a+          +  +++lp+L +l++d+ p++R ++a++ +
  KKY21371.1 489 QHPNYLYRMTTCFAIStlapvvtlAMIRDSILPILDKLVSDPIPNIRFNVAKSYA 543
                 5788888888888888555666554445599********************9654 PP

  == domain 8  score: 2.9 bits;  conditional E-value: 0.1
      HEAT_2   3 aLlqalendpdpevrraa 20 
                 + l+ l++d d +vr+ a
  KKY21371.1 580 PNLEKLQQDDDVDVRYFA 597
                 344445555555555544 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.5   4.8e+03      28      46 ..      50      67 ..      40      76 .. 0.68
   2 ?    3.4   0.0     0.086   1.2e+02      16      54 ..      80     114 ..      65     115 .. 0.84
   3 !   14.6   0.0   2.5e-05     0.035       1      53 [.     179     229 ..     179     231 .. 0.80
   4 ?    2.3   0.0      0.19   2.6e+02      15      48 ..     232     265 ..     227     267 .. 0.78
   5 !   17.0   0.0   4.6e-06    0.0063      28      50 ..     284     306 ..     281     306 .. 0.94
   6 ?    2.4   0.0      0.18   2.4e+02      24      47 ..     319     342 ..     310     343 .. 0.87
   7 ?    2.3   0.0      0.18   2.5e+02       9      45 ..     341     379 ..     337     382 .. 0.81
   8 ?    2.2   0.0      0.19   2.7e+02      28      55 .]     479     506 ..     473     506 .. 0.91
   9 ?    2.4   0.0      0.17   2.3e+02      25      51 ..     574     600 ..     564     600 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.5
     HEAT_EZ 28 eilpaLlalLnd...dsdeVRa 46
                e    L+++L d   d+deV +
  KKY21371.1 50 E----LIPFLDDsveDEDEVLT 67
                4....44555444445666655 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.086
     HEAT_EZ  16 ggepellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 +g+p++ +    ++l +L +l   ++++VR +A+  L +
  KKY21371.1  80 VGGPDYAH----VLLSPLENLAAIEEPLVRDKAVESLNK 114
                 46777777....999999999999**********99876 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 2.5e-05
     HEAT_EZ   1 wrvRraAawaLGr.laggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 + vRr Aa++L+  +     e   p +++e++p++  l  dd+d+VR  ++  L 
  KKY21371.1 179 PMVRRQAANNLAKfIK----EVPTPiVIEEMIPLFQHLAGDDQDSVRLLTVDVLI 229
                 689********96544....332334689*******************9998876 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.19
     HEAT_EZ  15 aggepellqplvpeilpaLlalLnddsdeVRaaA 48 
                 a++ p  +q  + ++l aL +lL d+s +VR+ +
  KKY21371.1 232 AEEIPKEQQSSHGVLLTALQNLLGDKSWRVRYMV 265
                 366777777788899********99988999866 PP

  == domain 5  score: 17.0 bits;  conditional E-value: 4.6e-06
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaAag 50 
                 +++pa+++lL+d+++eVR+a+ag
  KKY21371.1 284 DLVPAFVKLLKDSEAEVRTAVAG 306
                 79******************996 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.18
     HEAT_EZ  24 plvpeilpaLlalLnddsdeVRaa 47 
                 +l+ ei+     l +d+s++VRaa
  KKY21371.1 319 TLLNEIMGSIEDLVSDPSQHVRAA 342
                 6788999***************97 PP

  == domain 7  score: 2.3 bits;  conditional E-value: 0.18
     HEAT_EZ   9 waLGr.laggepellqp.lvpeilpaLlalLnddsdeVR 45 
                 +aLG+ + g +p l +   +  +lp +l++L+d+ ++VR
  KKY21371.1 341 AALGTqISGLAPILGKEeTIAHLLPMFLQMLKDEFPDVR 379
                 47888877777777666688889**********999998 PP

  == domain 8  score: 2.2 bits;  conditional E-value: 0.19
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaAagaLgnl 55 
                 +i+p  +a+ ++++ + R +++ a++ l
  KKY21371.1 479 AIVPKVVAMGQHPNYLYRMTTCFAISTL 506
                 599999****9999999********975 PP

  == domain 9  score: 2.4 bits;  conditional E-value: 0.17
     HEAT_EZ  25 lvpeilpaLlalLnddsdeVRaaAaga 51 
                   ++i p L +l +dd+ +VR+ A +a
  KKY21371.1 574 IESQITPNLEKLQQDDDVDVRYFATIA 600
                 457888888866677777***988765 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         5   6.9e+03       2      35 ..      27      64 ..      26      66 .. 0.69
   2 ?    1.9   0.0      0.14     2e+02      65     106 ..      95     137 ..      86     149 .. 0.80
   3 !   18.3   0.0   1.3e-06    0.0018      24      90 ..     168     236 ..     158     245 .. 0.86
   4 !    6.5   0.1    0.0055       7.6      23      76 ..     247     302 ..     244     306 .. 0.87
   5 !   12.3   0.0   9.2e-05      0.13      16     105 ..     318     410 ..     308     431 .. 0.82
   6 ?    2.3   0.0      0.11   1.5e+02       4      40 ..     500     537 ..     488     555 .. 0.66
   7 ?   -0.9   0.0       1.1   1.5e+03      21      43 ..     577     599 ..     571     600 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5
        Cnd1  2 iRalairtlg....cirvpnlveylvepLrkrLkDedp 35
                +R +ai  l+    ++  + + ++l++ L  +++Ded+
  KKY21371.1 27 LRLNAIHRLStialALGPERTRDELIPFLDDSVEDEDE 64
                67788888875544445567778888888888888875 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.14
        Cnd1  65 klleDenprVvanalaalteisek.senaiynllpdiisklsd 106
                 +l   e+p V++ a+ +l++i e+ s++++ ++++ +  +ls+
  KKY21371.1  95 NLAAIEEPLVRDKAVESLNKICEQlSQTQVEQSFIPLTIRLSK 137
                 5555578999999999999999999889999999888888875 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 1.3e-06
        Cnd1  24 epLrkrLkDedpyVRktaaivvakLilnd..mvkekgflselaklleDenprVvanalaalteisekse 90 
                 e+  + ++De p+VR++aa  +ak i++    +  ++++  +++l  D++++V+ +++ +l  i+e+ +
  KKY21371.1 168 EQFGHLVHDETPMVRRQAANNLAKFIKEVptPIVIEEMIPLFQHLAGDDQDSVRLLTVDVLIAIAEEIP 236
                 6677899******************87643389999**************************9999844 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0055
        Cnd1  23 vepLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselaklleDenprVva 76 
                 ++ L++ L D++  VR   a  + k+     d v +++++  + kll+D++++V++
  KKY21371.1 247 LTALQNLLGDKSWRVRYMVADRFEKIakAVDDEVVNRDLVPAFVKLLKDSEAEVRT 302
                 67899999999999999999999999887778899999999999999999999986 PP

  == domain 5  score: 12.3 bits;  conditional E-value: 9.2e-05
        Cnd1  16 pnlveylvepLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselaklleDenprVvanalaalteisek.senaiynllpdiiskls 105
                 ++l+ +++  ++  ++D++++VR      ++ L  il +      +l +++++l+De p V+   ++ l+ +++  + +++ ++l   i  ls
  KKY21371.1 318 DTLLNEIMGSIEDLVSDPSQHVRAALGTQISGLapILGKEETIAHLLPMFLQMLKDEFPDVRLHIISKLEHVNKViGIELLSQSLLPAITTLS 410
                 678899999**************************999999999********************99999999999654666666666665555 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.11
        Cnd1   4 alairtlg.cirvpnlveylvepLrkrLkDedpyVRkt 40 
                 + ai tl+ ++ +  + + +++ L k ++D+ p +R +
  KKY21371.1 500 CFAISTLApVVTLAMIRDSILPILDKLVSDPIPNIRFN 537
                 34566666666666666666666666666666666644 PP

  == domain 7  score: -0.9 bits;  conditional E-value: 1.1
        Cnd1  21 ylvepLrkrLkDedpyVRktaai 43 
                 +++++L+k  +D+d  VR  a i
  KKY21371.1 577 QITPNLEKLQQDDDVDVRYFATI 599
                 57888999999999999987765 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   8.1e-05      0.11     453     510 ..     164     221 ..      23     234 .. 0.70
   2 !   29.0   0.1   2.9e-10     4e-07     106     393 ..      80     378 ..      75     391 .. 0.83
   3 ?    3.6   0.0     0.014        20     108     207 ..     317     415 ..     304     435 .. 0.73
   4 !    7.0   0.0    0.0014       1.9      90     140 ..     490     544 ..     488     599 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.1e-05
                 HHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THXHHHHHHHHHHHXXSHHHH CS
   Adaptin_N 453 sdllrslaekfvlesekvklqiltalvKlyltspdketqekliqlvlslatssdlevr 510
                 + l + +   +++e+ +v+ q+ ++l+K+ +  p+  + e++i l+++la +++++vr
  KKY21371.1 164 AGLREQFGHLVHDETPMVRRQAANNLAKFIKEVPTPIVIEEMIPLFQHLAGDDQDSVR 221
                 4566777778888888888888888888888888888888888888888887676666 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 2.9e-10
                 C--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHC CS
   Adaptin_N 106 irvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkq.lveeikellsdkdpgvvlaAvalleeikkndrlllkllpklvrrLcnllte 203
                 ++ p+ a  l+  +++l+  ++p vr kA+ ++ k+ ++ ++ + +q +++ ++ l + +    + +A+ l++   +++ + ++l   l +++  l+++
  KKY21371.1  80 VGGPDYAHVLLSPLENLAAIEEPLVRDKAVESLNKICEQLSQTQVEQsFIPLTIRLSKADWFTSKISATGLYTTP-YKKAS-SNLQAGLREQFGHLVHD 176
                 5567778889999************************997777777778988888888888************99.44333.589999999999999** PP

                 S-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST.....HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHH CS
   Adaptin_N 204 ldpwlqvkiiklltrlarqepeerskkellesllnllqssnnaVlletvnlivelapkne.....livlavnaLvrllsskdenlryvaLrtllkivkk 297
                  +p       + l + +++ p   + +e+++  + l    +++V l tv +++ +a++ +     +   + +aL+ ll +k   +ry++ +++ ki+k 
  KKY21371.1 177 ETPMVRRQAANNLAKFIKEVPTPIVIEEMIPLFQHLAGDDQDSVRLLTVDVLIAIAEEIPkeqqsSHGVLLTALQNLLGDKSWRVRYMVADRFEKIAKA 275
                 ******************99888844666666666666***************77777666666878889*********99999*************** PP

                 XXTTTTTTTCCCCSXXT..TSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHT.TSSXXHH..HHHHHHHHHHHHHHHS..CCHHHHHHHHHHHHHTTX CS
   Adaptin_N 298 epkavqhldlkifllkt..dddvsirlkaldlllklvdesNvkeivkeLkkyv.kevaded..fksklvkaIgrlaekf..atdaewvldvllellsls 389
                   ++v ++dl   ++k   d   ++r+       ++++    +++++e++  +   v+d++  ++++l ++I+ la     ++ +++ l+++l++l+++
  KKY21371.1 276 VDDEVVNRDLVPAFVKLlkDSEAEVRTAVAGQIPGFCNLLDRDTLLNEIMGSIeDLVSDPSqhVRAALGTQISGLAPILgkEETIAHLLPMFLQMLKDE 374
                 *9****999998887751155667888888888888888888888888888884445777777999999******999998999999*******99987 PP

                 XHHH CS
   Adaptin_N 390 gesv 393
                    v
  KKY21371.1 375 FPDV 378
                 5555 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.014
                 -CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCC..CHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCCCC.HHHHHHHCCHHHHHHC CS
   Adaptin_N 108 vpelaedlapaikkllkdrspyvrkkAalailklykk..dpdllrkqlveeikellsdkdpgvvlaAvalleeikkndrlll.kllpklvrrLcnllte 203
                  ++l+  ++  i++l++d+s  vr +  + i  l  +  +++ + + l++ + + l+d+ p v l+ ++ le++  n+ + +  l ++l   +++l +e
  KKY21371.1 317 RDTLLNEIMGSIEDLVSDPSQHVRAALGTQISGLAPIlgKEETIAH-LLPMFLQMLKDEFPDVRLHIISKLEHV--NKVIGIeLLSQSLLPAITTL-SE 411
                 4568899****************98776777777666667777777.699999999999999999999999999..44444445555555555544.55 PP

                 S-HH CS
   Adaptin_N 204 ldpw 207
                   +w
  KKY21371.1 412 DRSW 415
                 5555 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0014
                 SSSHHHH...HHHHHHHCCC--CCCH.HHHHHHHHHHHT-SSHHHHHHHHHHHHH CS
   Adaptin_N  90 dpnqlir...glALrvLssirvpela.edlapaikkllkdrspyvrkkAalailk 140
                 +pn l+r   ++A+++L+ + +  +  ++++p + kl++d+ p +r + a + + 
  KKY21371.1 490 HPNYLYRmttCFAISTLAPVVTLAMIrDSILPILDKLVSDPIPNIRFNVAKSYAV 544
                 6676665222789*****999766663789*************999877766554 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       4.3   5.9e+03       9      41 ..      34      64 ..      28      77 .. 0.73
   2 ?   -1.6   0.0         3   4.1e+03      39      61 ..     100     122 ..      83     129 .. 0.65
   3 ?   -0.5   0.0       1.4   1.9e+03      36      84 ..     174     220 ..     161     226 .. 0.61
   4 ?    0.9   0.0       0.5   6.9e+02      24      60 ..     201     237 ..     181     254 .. 0.80
   5 !   19.1   0.1   1.1e-06    0.0015      11      88 ..     229     304 ..     224     307 .. 0.87
   6 ?    0.3   0.0      0.79   1.1e+03      66      87 ..     321     342 ..     314     348 .. 0.74
   7 ?    4.4   0.0     0.041        57      22      85 ..     357     418 ..     341     422 .. 0.81
   8 ?    2.2   0.0       0.2   2.8e+02      25      89 ..     399     461 ..     392     469 .. 0.72
   9 ?    0.9   0.0      0.53   7.3e+02      28      85 ..     480     535 ..     464     541 .. 0.67
  10 ?    4.1   0.0      0.05        68      23      48 ..     572     598 ..     565     600 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.3
  Vac14_Fab1_bd  9 gLaavaialekkikeyleeivkpvlkcfsDkds 41
                    L ++a+al+   ++  +e+++ + ++++D+d+
     KKY21371.1 34 RLSTIALALG--PERTRDELIPFLDDSVEDEDE 64
                   5555666665..467788888888888888886 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3
  Vac14_Fab1_bd  39 kdsrvRyyacEslyniakvakge 61 
                    ++  vR  a+Esl  i+ ++ ++
     KKY21371.1 100 EEPLVRDKAVESLNKICEQLSQT 122
                    55667777888887777766554 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.4
  Vac14_Fab1_bd  36 fsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesv 84 
                    ++D+   vR  a+  l   +k + + ++  ++e+   + +l+ D + sv
     KKY21371.1 174 VHDETPMVRRQAANNLAKFIKEVPTPIV--IEEMIPLFQHLAGDDQDSV 220
                    5666666777777666666666555443..3333333344455555555 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.5
  Vac14_Fab1_bd  24 yleeivkpvlkcfsDkdsrvRyyacEslyniakvakg 60 
                    ++ee+++   +   D+++ vR  +++ l  ia  + +
     KKY21371.1 201 VIEEMIPLFQHLAGDDQDSVRLLTVDVLIAIAEEIPK 237
                    5778888888888999999999999999999887765 PP

  == domain 5  score: 19.1 bits;  conditional E-value: 1.1e-06
  Vac14_Fab1_bd  11 aavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksga 88 
                     a+a  + k+ ++    +++ + + + Dk+ rvRy +++ +  iak++ +ev++   ++  a+vkl+ Ds+++v++++
     KKY21371.1 229 IAIAEEIPKEQQSSHGVLLTALQNLLGDKSWRVRYMVADRFEKIAKAVDDEVVN--RDLVPAFVKLLKDSEAEVRTAV 304
                    4555666667777778889999999***************************99..5999999************986 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 0.79
  Vac14_Fab1_bd  66 lneifdalvklvaDsdesvksg 87 
                    lnei   +  lv+D  ++v+ +
     KKY21371.1 321 LNEIMGSIEDLVSDPSQHVRAA 342
                    6677777777777777777765 PP

  == domain 7  score: 4.4 bits;  conditional E-value: 0.041
  Vac14_Fab1_bd  22 keyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvk 85 
                    +e + +++++ l++++D+   vR + +  l  + kv+  e+l+  ++++ a++ l+ D    v+
     KKY21371.1 357 EETIAHLLPMFLQMLKDEFPDVRLHIISKLEHVNKVIGIELLS--QSLLPAITTLSEDRSWRVR 418
                    56788999****************************9999987..4566666666666666655 PP

  == domain 8  score: 2.2 bits;  conditional E-value: 0.2
  Vac14_Fab1_bd  25 leeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvk.lvaDsdesvksgae 89 
                     +++++ + +  +D++ rvR   +E++  +a +     +k++ e ++ l+   + D+  s++++a 
     KKY21371.1 399 SQSLLPAITTLSEDRSWRVRLAIIEYIPLLASQ---LGVKFFDEQLSSLCMaWLGDTVFSIREAAT 461
                    578899999999***********9997766654...455666666666664146788888887765 PP

  == domain 9  score: 0.9 bits;  conditional E-value: 0.53
  Vac14_Fab1_bd  28 ivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkll.neifdalvklvaDsdesvk 85 
                    iv+ v+++ +  +   R ++c     i+  a    l ++  +i+ +l klv+D  ++++
     KKY21371.1 480 IVPKVVAMGQHPNYLYRMTTCF---AISTLAPVVTLAMIrDSILPILDKLVSDPIPNIR 535
                    6666666666666666666664...4444444455554414688899999999988887 PP

  == domain 10  score: 4.1 bits;  conditional E-value: 0.05
  Vac14_Fab1_bd  23 eyleeivkpvl.kcfsDkdsrvRyyac 48 
                    e++e+ ++p l k  +D+d  vRy+a+
     KKY21371.1 572 EVIESQITPNLeKLQQDDDVDVRYFAT 598
                    45555555555155689999*****97 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0028       3.9      43     110 ..      14      81 ..       8      82 .. 0.79
   2 ?    0.9   0.0      0.36     5e+02      12      37 ..     101     126 ..      93     141 .. 0.77
   3 !    9.1   0.0     0.001       1.4       6      74 ..     172     238 ..     168     278 .. 0.91
   4 !    7.1   0.0    0.0042       5.8       6     102 ..     330     425 ..     325     434 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0028
     RTP1_C1  43 kllleaLkdedsYvYLnaikgLvaLadvf.peevlklLleeyeeenekeslderlkvGEaLlrvirrlg 110
                  +l++ Lk++d  + Lnai+ L+++a +  pe++ ++L+    + + + + +    ++E L ++++ +g
  KKY21371.1  14 AVLIDELKHDDVLLRLNAIHRLSTIALALgPERTRDELIPFL-DDSVEDEDEVLTALSEELGNFVEYVG 81 
                 678999*****************9998874677777777777.66666667777788888888887766 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.36
     RTP1_C1  12 llpvrahglvlLrkliekkskeavld 37 
                 ++ vr +++ +L+k++e+ s+++v++
  KKY21371.1 101 EPLVRDKAVESLNKICEQLSQTQVEQ 126
                 5669999**********999665443 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.001
     RTP1_C1   6 kdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpee 74 
                 + ++d+ + vr ++ + L+k i++    + + ie+++ l+++   d+ + v L  + +L a+a+ +p+e
  KKY21371.1 172 HLVHDETPMVRRQAANNLAKFIKEVP--TPIVIEEMIPLFQHLAGDDQDSVRLLTVDVLIAIAEEIPKE 238
                 5789*********************9..9************999999999**************99987 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0042
     RTP1_C1   6 kdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevl.klLleeyeeenekeslderlkvGEaL 102
                 + ++dp  +vra   ++++ l+      ++++i ++l ++l++Lkde + v L+ i+ L+++ +v+  e l + Ll + ++ +e++s   rl + E +
  KKY21371.1 330 DLVSDPSQHVRAALGTQISGLAPILG--KEETIAHLLPMFLQMLKDEFPDVRLHIISKLEHVNKVIGIELLsQSLLPAITTLSEDRSWRVRLAIIEYI 425
                 55677777777776677777776666..8999****************************99999987776467888888888888877777776665 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.052        72     174     209 ..     163     198 ..      85     200 .. 0.71
   2 !    9.5   0.0   0.00049      0.68      92     195 ..     202     303 ..     189     305 .. 0.75
   3 ?    1.0   0.0      0.19   2.6e+02     169     195 ..     316     342 ..     312     345 .. 0.87
   4 ?    1.3   0.0      0.15   2.1e+02     128     202 ..     399     466 ..     343     474 .. 0.68
   5 ?    4.3   0.0     0.019        26      95     196 ..     441     538 ..     429     551 .. 0.62

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.052
     CLASP_N 174 ldliekslkkgleDanptVRetaRstfweffkvwPs 209
                    +++++  ++ D  p VR++a + + +f k +P+
  KKY21371.1 163 QAGLREQFGHLVHDETPMVRRQAANNLAKFIKEVPT 198
                 245689999999*********999999999998886 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00049
     CLASP_N  92 veillptLlkllgdtKkiisqnanqalaallsnasfspr....i.lqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgl 185
                 +e ++p++  l gd  + ++  +  +l a+ ++++ +++    + l+ l+++l dK+ + R ++a   + + +           + + + ++++++k+l
  KKY21371.1 202 IEEMIPLFQHLAGDDQDSVRLLTVDVLIAIAEEIPKEQQsshgVlLTALQNLLGDKSWRVRYMVADRFEKIAKAVD-------DEVVNRDLVPAFVKLL 293
                 7788888888888888888888888888888888855551111335556666669999999988877766666666.......555667789******* PP

     CLASP_N 186 eDanptVRet 195
                 +D++ +VR +
  KKY21371.1 294 KDSEAEVRTA 303
                 ********86 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.19
     CLASP_N 169 easllldliekslkkgleDanptVRet 195
                 ++ +ll++i+ s+  +++D++  VR +
  KKY21371.1 316 DRDTLLNEIMGSIEDLVSDPSQHVRAA 342
                 56778999*****************75 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.15
     CLASP_N 128 sprilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleaslll.dliekslkkgleDanptVRetaRstfwe 202
                 s+ +l  ++++++d++ + R+  ++++ +l ++ +         + + +++  + ++ l D   ++Re+a + + +
  KKY21371.1 399 SQSLLPAITTLSEDRSWRVRLAIIEYIPLLASQLG--------VKFFdEQLSSLCMAWLGDTVFSIREAATQNLKK 466
                 45667888889999999999999998888888877........333323344444566666666666666555555 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.019
     CLASP_N  95 llptLlkllgdtKkiisqnanqalaallsnas...fsprilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanp 190
                 l ++++  lgdt   i+++a+q l+ l +  +    s  i+  + +  q  n+  R + +  +++l    +         ++ d+i ++l k+++D+ p
  KKY21371.1 441 LSSLCMAWLGDTVFSIREAATQNLKKLTEVFGvewASGAIVPKVVAMGQHPNYLYRMTTCFAISTLAPVVT-------LAMIRDSILPILDKLVSDPIP 532
                 55566666666666666666666666666665111122333344444444455555555554444444444.......4455699************** PP

     CLASP_N 191 tVReta 196
                 ++R + 
  KKY21371.1 533 NIRFNV 538
                 ***654 PP

>> Ecm29  Proteasome stabiliser
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.5   3.5e+03     410     460 ..      13      60 ..       7      68 .. 0.78
   2 ?    3.8   0.0     0.013        18     351     459 ..     155     254 ..     102     277 .. 0.69
   3 !    7.8   0.1    0.0008       1.1      18      55 ..     357     394 ..     357     405 .. 0.93
   4 ?    2.1   0.0     0.043        59     210     267 ..     415     480 ..     394     487 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.5
       Ecm29 410 iefLFdsLeeeesevrvsIqeALssllsafkeleseaskekLeellleyle 460
                 i  L d+L++++  +r++  + Ls+++ a+    +e  +++L  +l   +e
  KKY21371.1  13 IAVLIDELKHDDVLLRLNAIHRLSTIALALG---PERTRDELIPFLDDSVE 60 
                 7789999999999999999999999999986...56678888888887775 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.013
       Ecm29 351 lkkiapvllsglrklidsqgwpepeknssaseelrslaYealGlLakrapslvredlsliefLFdsLeeee.sevrvsIqeALssllsafkeleseask 448
                  kk +++l +glr+   +   +e+         +r++a + l++++k+ p+ +   ++ +  LF++L++++ ++vr+   + L  +++ +++  +++s 
  KKY21371.1 155 YKKASSNLQAGLREQFGHLVHDET-------PMVRRQAANNLAKFIKEVPTPI--VIEEMIPLFQHLAGDDqDSVRLLTVDVLIAIAEEIPKE-QQSSH 243
                 667777777777777765444443.......4789999999999999999987..6888999*********779***************9987.55555 PP

       Ecm29 449 ekLeellleyl 459
                   L + l + l
  KKY21371.1 244 GVLLTALQNLL 254
                 55555544444 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0008
       Ecm29  18 eklLskfLpplLlklasphasvRkkVieilqhinkrik 55 
                 e+++  +Lp  L  l+ + ++vR  +i+ l+h+nk+i 
  KKY21371.1 357 EETIAHLLPMFLQMLKDEFPDVRLHIISKLEHVNKVIG 394
                 6788999****************************996 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.043
       Ecm29 210 eetKlailkflasga.......ftdeerevlpallvasadsdssvsdraeelLKrlsv....dledeal 267
                  +++lai++++   a       f de+  +  ++++   d+ +s+ ++a + LK+l+     ++ + a+
  KKY21371.1 415 WRVRLAIIEYIPLLAsqlgvkfF-DEQ--LSSLCMAWLGDTVFSIREAATQNLKKLTEvfgvEWASGAI 480
                 55666666665333333355526.664..7888999999****************98656556655555 PP

>> Proteasom_PSMB  Proteasome non-ATPase 26S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00037      0.51     204     228 ..      16      40 ..       8      47 .. 0.90
   2 ?    3.4   0.1     0.016        22      45     177 ..     205     341 ..     180     380 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00037
  Proteasom_PSMB 204 llkeldgeDvLvqldalelltelAe 228
                     l+ el+ +DvL++l+a+  l+++A+
      KKY21371.1  16 LIDELKHDDVLLRLNAIHRLSTIAL 40 
                     899*******************997 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.016
  Proteasom_PSMB  45 leelfdclntdkreqvt.lcvellklilkalavdelaedlk...vvlleglshanpnvkalvLaeleRiveekegalellkneelllliikalre 135
                     +  lf+ l  d ++ v  l+v++l  i +++  ++ ++ +     +l++ l     +v+ +v    e+i +   ++ +   n++l+ + +k l++
      KKY21371.1 205 MIPLFQHLAGDDQDSVRlLTVDVLIAIAEEIPKEQ-QSSHGvllTALQNLLGDKSWRVRYMVADRFEKIAK---AVDDEVVNRDLVPAFVKLLKD 295
                     56789999977677775268999988877775555.55544111567788888889999996666666555...555678999***********9 PP

  Proteasom_PSMB 136 edlsvaeea.irl..lskllkqeagleelkskLkallkr.ndivRa 177
                      +++v +++ +++  + +ll+++  l+e+  ++++l+   ++ vRa
      KKY21371.1 296 SEAEVRTAVaGQIpgFCNLLDRDTLLNEIMGSIEDLVSDpSQHVRA 341
                     9999976652554558999999999999999999998887888886 PP

>> TetR_C_16  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.091   1.3e+02      41      74 ..     278     310 ..     258     316 .. 0.81
   2 ?    5.7   0.0     0.012        17      41      76 ..     317     351 ..     314     354 .. 0.90
   3 ?   -1.2   0.0       1.7   2.3e+03      36      64 ..     566     594 ..     561     600 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.091
                 HHHHHHHHHHHCTTTS-STTHHHHHHHHHHHHHH CS
   TetR_C_16  41 refleeqvlaplaarlggpdaelRaalvasqllG 74 
                  e++++ +++++ + l++++ae+R+a+ a q+ G
  KKY21371.1 278 DEVVNRDLVPAFVKLLKDSEAEVRTAV-AGQIPG 310
                 5788999999**************965.556655 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHCTTTS-STTHHHHHHHHHHHHHHHH CS
   TetR_C_16  41 refleeqvlaplaarlggpdaelRaalvasqllGla 76 
                 r+ l +++++++ + +++p++++Raal ++q+ Gla
  KKY21371.1 317 RDTLLNEIMGSIEDLVSDPSQHVRAAL-GTQISGLA 351
                 6778899******************76.99****97 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.7
                 --HHHHHHHHHHHHHHCTTTS-STTHHHH CS
   TetR_C_16  36 aaellrefleeqvlaplaarlggpdaelR 64 
                 aa+  +e++e q++++l +  +++d ++R
  KKY21371.1 566 AAKQGQEVIESQITPNLEKLQQDDDVDVR 594
                 5666789999*******999999999998 PP

>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       1.4     2e+03      68     107 ..     100     123 ..      90     138 .. 0.60
   2 ?   10.4   0.0   0.00032      0.44      55     120 ..     184     252 ..     146     260 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.4
                 SSTTTTGGHHHHHHHHHTSSSHHHHHHHHHHHHTTS-HHH CS
      RhoGAP  68 pepLltkelyeelieaaksedeeerlealkellekLPken 107
                 +epL+                +++ +e+l++++e+L++++
  KKY21371.1 100 EEPLV----------------RDKAVESLNKICEQLSQTQ 123
                 34444................4445555555555555543 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00032
                 HHHHHHHHHHHHSSSTTTTGGHHHHHHHHHTSSSHHHHHHHHHHHHT...TS-HHHHHHHHHHHHHHHH CS
      RhoGAP  55 avaslLKrfLrelpepLltkelyeelieaaksedeeerlealkelle...kLPkenrdtLryLlehLkr 120
                 + a+ L +f++e p+p++ +e+++ + ++a  ++++ rl  +  l+    + Pke+++   +Ll  L++
  KKY21371.1 184 QAANNLAKFIKEVPTPIVIEEMIPLFQHLAGDDQDSVRLLTVDVLIAiaeEIPKEQQSSHGVLLTALQN 252
                 67888999********************99999999997666666555559999999998888888876 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       3.8   5.3e+03      15      32 ..      14      31 ..      13      32 .. 0.83
   2 ?   -3.0   0.0       6.2   8.6e+03      18      33 ..     171     186 ..     168     186 .. 0.82
   3 ?   -3.4   0.2       8.5   1.2e+04      33      39 ..     247     253 ..     245     254 .. 0.83
   4 ?    8.6   0.0    0.0014         2       8      34 ..     280     306 ..     277     306 .. 0.83
   5 ?    2.4   0.0      0.13   1.8e+02      11      29 ..     361     379 ..     356     383 .. 0.85
   6 ?   -2.9   0.0       5.9   8.2e+03       5      21 ..     418     432 ..     417     436 .. 0.81
   7 ?   -1.1   0.0       1.6   2.3e+03       6      33 ..     512     539 ..     508     539 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.8
                HHHHHHTTTSSHHHHHHH CS
         Arm 15 ppLvrLLssedeevqeeA 32
                 +L++ L+++d+ ++ +A
  KKY21371.1 14 AVLIDELKHDDVLLRLNA 31
                57999999*999888887 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.2
                 HHHTTTSSHHHHHHHH CS
         Arm  18 vrLLssedeevqeeAa 33 
                  +L ++e ++v+++Aa
  KKY21371.1 171 GHLVHDETPMVRRQAA 186
                 5788899999****97 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 8.5
                 HHHHHHH CS
         Arm  33 awALsNL 39 
                 ++AL+NL
  KKY21371.1 247 LTALQNL 253
                 789***9 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0014
                 HHHTTHHHHHHHHTTTSSHHHHHHHHH CS
         Arm   8 vieaGavppLvrLLssedeevqeeAaw 34 
                 v++   vp++v+LL++   ev++++a+
  KKY21371.1 280 VVNRDLVPAFVKLLKDSEAEVRTAVAG 306
                 555567***************999875 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.13
                 TTHHHHHHHHTTTSSHHHH CS
         Arm  11 aGavppLvrLLssedeevq 29 
                 a  +p ++++L++e ++v+
  KKY21371.1 361 AHLLPMFLQMLKDEFPDVR 379
                 4569********9999997 PP

  == domain 6  score: -2.9 bits;  conditional E-value: 5.9
                 HHHHHHTTHHHHHHHHT CS
         Arm   5 kdavieaGavppLvrLL 21 
                 + a+ie+  +p L + L
  KKY21371.1 418 RLAIIEY--IPLLASQL 432
                 6789999..99998877 PP

  == domain 7  score: -1.1 bits;  conditional E-value: 1.6
                 HHHHHTTHHHHHHHHTTTSSHHHHHHHH CS
         Arm   6 davieaGavppLvrLLssedeevqeeAa 33 
                  a+i+  ++p+L +L s++ +++++++a
  KKY21371.1 512 LAMIRDSILPILDKLVSDPIPNIRFNVA 539
                 6788888****99999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.82u 0.35s 00:00:01.17 Elapsed: 00:00:00.51
# Mc/sec: 3606.25
//
Query:       KKY21372.1  [L=329]
Description: putative amidohydrolase 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-30  106.1   0.1    2.6e-30  105.9   0.1    1.0  1  Amidohydro_1  Amidohydrolase family
    4.5e-12   46.2   0.0    7.8e-12   45.4   0.0    1.3  1  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   0.1   2.9e-34   2.6e-30      44     332 ..       1     301 [.       1     314 [. 0.87

  Alignments for each domain:
  == domain 1  score: 105.9 bits;  conditional E-value: 2.9e-34
                   HHHTTEEEEEEEEHSSTHHHHHHHHHHHT.SSSEEEEEEESSEGGS...............................GCCCSHHHHHHHHHHHHHHH CS
  Amidohydro_1  44 alksGtttvadmgattstgiealleaaee.lplglrilggkvsldr...............................gsaetskasreklkagaaet 108
                   +l  G+ttv+d+g     + + l+ a+ e l++g+r+++++  l++                               g++ + +a r +l++g a++
    KKY21372.1   1 MLHRGFTTVRDTGG----SNNSLRSAIAEnLVPGPRLFIAGKALSQtgghadlrashegaqfkccdsstpgfgrvcdGVPACLEAARDELRQG-ANF 92 
                   899***********....778888877777999************************************************************.8** PP

                   HHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHCCEEEHCTCEEEHH.... CS
  Amidohydro_1 109 ikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafgetiehgthlevaeslglldeiklilahgvhltpt.... 201
                   +k++ +g+v +  +p   ++f+++el+++ + a+ ++++v++Ha  +++   +a+  + ++iehg ++++a      +    + +  v +tpt    
    KKY21372.1  93 LKVMCGGGVVSPSDPLQMVQFTASELQAITSTASSIGTYVTAHAYTDSAVR-HAVTNGCKGIEHGNFVSRATA----EW-LRCEHADVIITPTlaty 183
                   ********************************************9988888.66666666**********887....33.33344445555554457 PP

                   HHHHHHHHHHHHCEE..HHHHHHHHSEHHHHHHHHHHHHTSCEEEEEECTTSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHH CS
  Amidohydro_1 202 eaellkerlkeagva..hcpfsnsilrsgrealrkaldeGvkvglgtDgaasgnslnlleelrlalklqrgllyedeegglslkealrmaTingAka 296
                    a  l+e+  +++ +    ++++++l sg++ +r  +d G+ +g+gtD  a+++ l+    + + +         ++ + l+++e+l+ aTingAk+
    KKY21372.1 184 RAMSLPEN--RSMFSpdAQRKNDQVLVSGLDSIRLFHDLGITMGFGTDLLAHMHELQN---TEFEI---------RGSV-LPASEVLKHATINGAKV 265
                   78889999..99999999999999**********99999*********8899999944...67776.........3344.9**************** PP

                   TT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSE CS
  Amidohydro_1 297 lglddkvGsievGkdADlvvvdldilaafvglkkdg 332
                   lg+d k+G i++G  ADl v++ ++l+++  l++ g
    KKY21372.1 266 LGMDGKLGIIKEGAFADLLVLEQNPLCNVDVLAEGG 301
                   *********************888877777776655 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   8.7e-16   7.8e-12     243     472 ..      98     314 ..      76     315 .. 0.77

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 8.7e-16
  Amidohydro_3 243 gsrtalltepyftgwpdfedealaelvaaadergldvaihaigdaavd.dvldafeaaaekngnqdrr......rlehaegvtesqiervaalqvaa 332
                   g+ ++++++p       f+  +l ++ + a   g  v  ha++d+av+ +v ++    + ++gn  +r      r+eha ++ + +++  +a+ +  
    KKY21372.1  98 GGGVVSPSDPLQ--MVQFTASELQAITSTASSIGTYVTAHAYTDSAVRhAVTNGCK--GIEHGNFVSRataewlRCEHADVIITPTLATYRAMSLPE 190
                   455555555533..445666679999999*******************76666664..5566666666678999********999999999999999 PP

  Amidohydro_3 333 gvqpvfnfedelldsrlgperargstpvkellnagvkvalgsDapvgpfdpwprigaavmrktrrggevlrpdeelsleealalyTrgpAkalgled 429
                     + +f ++   ++++ +   ++g++ +++  + g+++ +g+D     + ++++++ +             ++  l+  e+l++ T ++Ak+lg++ 
    KKY21372.1 191 NRS-MFSPD---AQRKNDQVLVSGLDSIRLFHDLGITMGFGTD----LLAHMHELQNTEF---------EIRGSVLPASEVLKHATINGAKVLGMDG 270
                   999.55553...4455558889999******************....6666666666654.........345789********************** PP

  Amidohydro_3 430 rkGtLevGadADlvvldadpl.dvdppelaearvrltvvdGrvv 472
                   + G +++Ga ADl vl+++pl  vd  +   ++ ++ +++Grvv
    KKY21372.1 271 KLGIIKEGAFADLLVLEQNPLcNVDVLAEGGDNLSAILKEGRVV 314
                   *****************998724444444444466666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2139.58
//
Query:       KKY21373.1  [L=600]
Description: hypothetical protein UCRPC4_g03811 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.069   13.1   1.1       0.17   11.8   1.1    1.7  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.1   9.3e-06      0.17       2      47 ..       5      54 ..       4      55 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.3e-06
  F-box-like  2 srLPdEiLlqIFsyLppsd......LlrlalVCrrWrrvaldtplLWrrlvl 47
                 rLP E+L  I++ L   d      L +++  +r  rrv+   p + r+l++
  KKY21373.1  5 ERLPVELLQAILELLTNWDerpspwLMNISTQSRTLRRVT--LPMIFRTLTI 54
                69**********9876555566677999***********9..6799999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4062.07
//
Query:       KKY21397.1  [L=234]
Description: putative thioredoxin-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.14   12.3   0.1       0.28   11.3   0.0    1.6  2  AhpC-TSA_2  AhpC/TSA antioxidant enzyme


Domain annotation for each model (and alignments):
>> AhpC-TSA_2  AhpC/TSA antioxidant enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.6e-05      0.28      55     100 ..       3      55 ..       1      64 [. 0.61
   2 ?   -3.2   0.0       0.5   8.9e+03     104     113 .]      77      86 ..      74      86 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.6e-05
  AhpC-TSA_2  55 rglklkla.plslqka.lenllkrlkei.....gipgdl...ageltqrGGtflfd 100
                 r+l+l+++ p+++q   ++ ++k++++      +    +   ag+l q GG+flf+
  KKY21397.1   3 RTLSLGSKdPQYIQHSlFAGAMKSIAQGisrlpKG---DigkAGDLKQVGGEFLFE 55 
                 55666665234444443555666655543422444...2555*************7 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.5
  AhpC-TSA_2 104 elvyehrdrg 113
                 ++++ hr+r+
  KKY21397.1  77 QVTWCHRMRN 86 
                 689****985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1558.70
//
Query:       KKY21398.1  [L=1068]
Description: putative 1-phosphatidylinositol-bisphosphate phosphodiesterase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-57  192.4   0.0    4.7e-57  191.7   0.0    1.4  1  PI-PLC-X        Phosphatidylinositol-specific phospholipase C
    1.6e-42  144.5   0.0      3e-42  143.6   0.0    1.5  1  PI-PLC-Y        Phosphatidylinositol-specific phospholipase C
     0.0012   19.1   0.0      0.025   14.9   0.0    2.6  1  C2              C2 domain
     0.0024   17.3   0.0     0.0057   16.1   0.0    1.7  1  EF-hand_1       EF hand
     0.0074   16.8   0.0      0.019   15.5   0.0    1.7  1  PH_12           Pleckstrin homology domain
  ------ inclusion threshold ------
      0.019   15.4   0.3       0.06   13.8   0.3    1.9  1  EF-hand_7       EF-hand domain pair
      0.024   14.0   0.1      0.038   13.3   0.1    1.2  1  Glyco_hydro_42  Beta-galactosidase
      0.056   13.3   0.1       0.29   11.0   0.0    2.2  2  EF-hand_8       EF-hand domain pair
       0.16   12.0   0.2       0.47   10.5   0.2    1.8  1  EF-hand_6       EF-hand domain


Domain annotation for each model (and alignments):
>> PI-PLC-X  Phosphatidylinositol-specific phospholipase C, X domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.7   0.0   2.3e-60   4.7e-57       2     144 ..     459     600 ..     458     601 .. 0.99

  Alignments for each domain:
  == domain 1  score: 191.7 bits;  conditional E-value: 2.3e-60
                 EEEEETTTTTTS-SHHHHHTHHHH---SS-HHHHHHTT--EEEEEE-...TT.SEEEETTEEE.EEEHHHHHHHHHHHHHHSTT--EEEEEEETTT-TH CS
    PI-PLC-X   2 saPlshyfissshntyltgnqlssessveayrnaLlrGcRcvEidvwdgedeepvvlhgytltkkikfrdvleaikdyafktselPvivsLevhcsaeq 100
                 ++Pl++yfissshntyl+++ql++++s+e+y +aL+ GcRcvEid+wdg+++ep v hg+t+ ++ +f d+++ i++yaf++s++P+i+sLevhc+  q
  KKY21398.1 459 DRPLNEYFISSSHNTYLVDRQLVGRASTEMYVSALRLGCRCVEIDCWDGPKGEPLVNHGRTMSSPAPFADCVSVINRYAFDASPYPLILSLEVHCNDAQ 557
                 78************************************************************************************************* PP

                 HHHHHHHHHHHGGGGB-EEETT-.------BCCCCTT-EEEEE. CS
    PI-PLC-X 101 qekmaeilkeifgdlLleeplekeeskelpspeelkgKilikvk 144
                 q++m++ilke+fg +L++ p +   s+ lpspeel+ ++l+kvk
  KKY21398.1 558 QARMVQILKEVFGPRLVTFPVHP-LSTVLPSPEELRYRVLVKVK 600
                 **********************7.9******************9 PP

>> PI-PLC-Y  Phosphatidylinositol-specific phospholipase C, Y domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.6   0.0   1.5e-45     3e-42       1     114 [.     703     818 ..     703     819 .. 0.93

  Alignments for each domain:
  == domain 1  score: 143.6 bits;  conditional E-value: 1.5e-45
    PI-PLC-Y   1 lsdlvvytqsvkfksfekpeakkpnhvfslsesklkkllekeee.kk.lvkhnrrhlmRvyPkgtrvdssNlnpvefWnvGvqmvAlnwqtldegmqln 97 
                 l++l+vy+q++k+++fe pe++++nhvfsl e ++ +l+ k+ e k  + +hn ++l+RvyP g+r++ssN++p+ +W++GvqmvAlnwqt+degmq+n
  KKY21398.1 703 LARLGVYLQGYKYRGFEAPESHRYNHVFSLAEGSAMNLC-KHPElKVhFENHNLHYLSRVYPGGFRIKSSNFDPIVYWRRGVQMVALNWQTYDEGMQIN 800
                 6789***********************************.66664556*************************************************** PP

    PI-PLC-Y  98 ealFa.engscGYvlKPe 114
                 +a+Fa + +++GYvlKP+
  KKY21398.1 801 RAMFAnSGDRKGYVLKPD 818
                 *****444569******8 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.3e-05     0.025       2      67 ..     845     942 ..     844     954 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.3e-05
                 EEEEEEEEEESSSSSST...TSSCEEEEEEEE.............................ECEEEEEE-SC.SSSSSSEEEEEEEEEESCHTTSEEEE CS
          C2   2 klevtvieAknLpnkdk...kgssdpyvkvsl.............................dgkqkakTrvi.knslnPvWnekftfevaeleeakLev 67 
                 k++v++i+A++Lp+  k     s++p++++++                              +  + +T+++ +n  nPv+ne+++++++     +L +
  KKY21398.1 845 KFSVNMISAQQLPRLGKigsDDSINPFIEIQMfsaddqrkgsasakgagydlsardgvsgsGRPYRMRTKIVqDNGYNPVFNEQIELSLET-RYPELVF 942
                 578999******99966566667999****99999999999999999999999999999888888999997757779**********9998.5555544 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.9e-06    0.0057       2      29 .]     328     355 ..     327     355 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.9e-06
                 HHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkkl 29 
                 l+e F ++D  ++G+++++Ef++++++l
  KKY21398.1 328 LREQFVLADASRTGRLNYDEFRDFVRRL 355
                 7899********************9985 PP

>> PH_12  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   9.4e-06     0.019      60     132 ..     192     262 ..     162     264 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.4e-06
       PH_12  60 tekidlsdisevksgkeaphskesgksssslskksssklsfslitl...skekellelvasseseaaeWlDGLsmL 132
                  ++  + di+e++ g+++ + +e+ +     ++ + s++ f++i+    +  ++ ++l+a +++e + W+  L+ L
  KKY21398.1 192 AKQFYIDDIKEIRVGNDTHTYREEFN-----ATDQESDCWFTIIYVdpeKGRTKAMHLIALDRTELSLWTTTLENL 262
                 4557899**********999998765.....99*************9998999*****************999877 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.3     3e-05      0.06       3      49 ..     327     369 ..     325     390 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3e-05
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelell 49 
                  l+e F + D  ++g+l+++e+++++r++     e ++l+d  l+ll
  KKY21398.1 327 TLREQFVLADASRTGRLNYDEFRDFVRRL----KERKDLRDIYLDLL 369
                 68999**********************99....66666666555555 PP

>> Glyco_hydro_42  Beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.9e-05     0.038     175     242 ..     402     475 ..     398     490 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.9e-05
                     GG---SSGGG---S-S-S....S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT...--S CS
  Glyco_hydro_42 175 WsqeysdfeeielPsels....eeenpskildykrFssdqilefvkaeaeilreyspdipvttnfmgs..afkd 242
                     Ws e++    i +P+  s     e   s+ + +  F+s ++ ++++     lr+ + d+p+ + f++s  +++ 
      KKY21398.1 402 WSSEFERLAKISTPKASSktdeREDTDSQLMTFDAFHSFMVSSYCSVYSAPLRKTKLDRPLNEYFISSshNTYL 475
                     ***************9997776677889999*******************************999998544444 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00015      0.29      15      54 ..     317     354 ..     313     355 .. 0.91
   2 ?   -1.6   0.0       1.3   2.5e+03       2      15 ..     429     443 ..     428     444 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
   EF-hand_8  15 rilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 r+l+++  +s++ +++ f ++D  + G+++++EF +++ r
  KKY21398.1 317 RSLHIN--CSKDTLREQFVLADASRTGRLNYDEFRDFVRR 354
                 889999..***************************99876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.3
   EF-hand_8   2 kgkItreelrril.r 15 
                 ++ +t++ +++++ +
  KKY21398.1 429 SQLMTFDAFHSFMvS 443
                 6889*****999855 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00024      0.47       2      28 ..     328     354 ..     327     363 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00024
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 lre F l D +++G ++++E+r++ r+
  KKY21398.1 328 LREQFVLADASRTGRLNYDEFRDFVRR 354
                 789999******************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1068 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.50
# Mc/sec: 6457.39
//
Query:       KKY21399.1  [L=1425]
Description: putative dicer-like protein 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-34  119.1   0.0    7.5e-20   71.5   0.0    2.8  2  Ribonuclease_3   Ribonuclease III domain
    3.1e-22   78.5   0.2    1.8e-21   76.1   0.0    2.4  2  Dicer_dimer      Dicer dimerisation domain
    1.2e-21   77.2   0.3    1.1e-11   45.0   0.0    3.6  3  Ribonucleas_3_3  Ribonuclease-III-like
    2.4e-14   53.6   0.0    6.1e-14   52.3   0.0    1.8  1  Helicase_C       Helicase conserved C-terminal domain
      2e-12   47.3   0.0    4.6e-12   46.1   0.0    1.6  1  DEAD             DEAD/DEAH box helicase
    2.6e-07   30.8   0.0    4.8e-07   29.9   0.0    1.4  1  ResIII           Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.012   16.3   0.3      0.068   13.9   0.1    2.3  2  dsrm             Double-stranded RNA binding motif
       0.04   12.8   0.1      0.068   12.0   0.1    1.3  1  UxaC             Glucuronate isomerase
        9.5    5.8  16.8         16    5.0  16.8    1.2  1  SR-25            Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> Ribonuclease_3  Ribonuclease III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0   3.8e-23   7.5e-20       1     104 [.     937    1042 ..     937    1043 .. 0.90
   2 !   44.7   0.0   8.1e-15   1.6e-11       1     104 [.    1125    1275 ..    1125    1276 .. 0.82

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 3.8e-23
                      HHHHHHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHTSHHHHHHHHHCTTCHCCHCHH................HHCCSTT.CHCTSHHHH CS
  Ribonuclease_3    1 erLeflGDavlklaittylfetypdahegrlsklrsklvsnenlarlakklglpkflrasefdpprnwlppgy..klsddeke.dddadkvla 90  
                      erLe+lGD  lk++++ ++f + p++hegrls +++ +++n  l+++a  lgl++++ +++f ++ +w+p+ +   l +d+ + ++ ++k+la
      KKY21399.1  937 ERLEYLGDTLLKVHTSFQMFAENPQWHEGRLSIAKTLIINNAHLSKAAIALGLDRYIHTDRF-LQAKWKPAINtdLLRKDPTKtREISTKTLA 1028
                      8*********************************************************9888.677788877777555666554677****** PP

                      HHHHHHHHHHHHHC CS
  Ribonuclease_3   91 dvvEAliGaiylds 104 
                      dvvEA+iGa y+d+
      KKY21399.1 1029 DVVEAIIGAAYMDG 1042
                      ***********996 PP

  == domain 2  score: 44.7 bits;  conditional E-value: 8.1e-15
                      HHHHHHHHHHHHHHHHHHHHHHCTTSS..HHHHHHHHHHHTSHHHHHHHH...........................HCTTCHCCHCHH.... CS
  Ribonuclease_3    1 erLeflGDavlklaittylfetypdah..egrlsklrsklvsnenlarla...........................kklglpkflrasefdp 64  
                      ++LeflGDa l+l+i++ ++++ p+    + +l+ +r++l + + l++++                             + l++f+r      
      KKY21399.1 1125 QQLEFLGDALLDLIIVETMIHHRPNNPlpQSQLTLIRHALANIHILSYFClsssyttqthnpvydpvtkqttltphlTHHYLWQFMR------ 1211
                      68*******************99988667******************9999999999999999999998888888875667888888...... PP

                      ..........HHCCSTTCHC............................TSHHHHHHHHHHHHHHHHHC CS
  Ribonuclease_3   65 prnwlppgyklsddekeddd............................adkvladvvEAliGaiylds 104 
                        n+ p + +++++ +   +                            a+k+++d++E+++Gai++ds
      KKY21399.1 1212 -HNGSPDLITAQTHCQ---SryttlspqihqyihhgatypwipllqlkAEKFYSDIIESILGAIFIDS 1275
                      .355555443333333...23446777888888999999999999999******************97 PP

>> Dicer_dimer  Dicer dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.0   8.8e-25   1.8e-21       3      89 ..     522     610 ..     520     613 .. 0.92
   2 ?   -1.7   0.0       1.7   3.3e+03      57      78 ..    1379    1400 ..    1357    1401 .. 0.88

  Alignments for each domain:
  == domain 1  score: 76.1 bits;  conditional E-value: 8.8e-25
  Dicer_dimer   3 slLnrycatlpsdeytdlrpeyevkevedkergkfqaevtLPsnsp..lrkieg.epmstkklAkrsaAfeackeLhkaglLddhLlPls 89 
                  ++L+++ca+lp+d+y d+ p+++++++ + + ++++a+v+LP  ++  lr   + + + t+k+Ak+++ f+a+++L+kagl++d+LlP++
   KKY21399.1 522 RHLYHFCASLPRDRYADNVPHFIYESD-NADAERIVAKVILPAAIDssLRVTGSeQSWLTQKQAKKDCSFQAYIKLYKAGLINDNLLPIR 610
                  79**********************998.7799************997667777799********************************97 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.7
  Dicer_dimer   57 mstkklAkrsaAfeackeLhka 78  
                    ++k +A+  aA  a+++L+k 
   KKY21399.1 1379 AESKMEAQARAAEGAIEKLRKG 1400
                   578999************9986 PP

>> Ribonucleas_3_3  Ribonuclease-III-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   5.6e-15   1.1e-11      17     117 ..     931    1048 ..     922    1056 .. 0.87
   2 !   23.9   0.0   1.8e-08   3.6e-05       3      65 ..    1103    1170 ..    1101    1177 .. 0.76
   3 ?    3.8   0.0     0.029        59      93     111 ..    1257    1275 ..    1252    1288 .. 0.84

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 5.6e-15
  Ribonucleas_3_3   17 grkghNerLefLGdavLklsvseyllekaek.degeltklraslvseeslaeiAkelgLgkvlrl.................rkgeeetegs 90  
                       g++ ++erLe+LGd +Lk+ +s  ++ +  + +eg+l+  ++ ++++ +l++ A+ lgL++++                   rk++++t++ 
       KKY21399.1  931 GEEVNYERLEYLGDTLLKVHTSFQMFAENPQwHEGRLSIAKTLIINNAHLSKAAIALGLDRYIHTdrflqakwkpaintdllRKDPTKTREI 1022
                       67789**************9888776655554*******************************9888899999****999988877777766 PP

  Ribonucleas_3_3   91 grekvladaleAliGAiyldkgaevaq 117 
                         +k lad++eA+iGA y+d+  e+ +
       KKY21399.1 1023 -STKTLADVVEAIIGAAYMDGSDEQSR 1048
                       .5679***************8766654 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 1.8e-08
  Ribonucleas_3_3    3 elleqaltHkSf..angrkghNerLefLGdavLklsvseyllekaek...degeltklraslvseesl 65  
                       +ll  altH S      r+++ ++LefLGda+L+l+++e ++++      ++ +lt  r++l + + l
       KKY21399.1 1103 TLLISALTHPSVlaITTRTSSFQQLEFLGDALLDLIIVETMIHHRPNnplPQSQLTLIRHALANIHIL 1170
                       7999********543466689******************99988443244677777777777666555 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.029
  Ribonucleas_3_3   93 ekvladaleAliGAiyldk 111 
                       ek  +d++e+++GAi++d+
       KKY21399.1 1257 EKFYSDIIESILGAIFIDS 1275
                       67789***********995 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   3.1e-17   6.1e-14      17     108 ..     340     449 ..     323     452 .. 0.75

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 3.1e-17
                 SEEEEEESSHHHHHH.HHHHHHHT.....TSTEEEESTTSTHHHHH.............HHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSS CS
  Helicase_C  17 gkilifvntidrlek.vklllekk.....gikvavlhgelpqnere.............eileqfnkgesdvLiatdvaerGidipkvnlVinfdlprn 96 
                  + +ifv++++++   + ll         ++k  ++ g+ ++ ++              e+l+ f+ g+ d+L++t+v+e+Gid+   nl+i+fd+p n
  KKY21399.1 340 INGIIFVQRRSTAFVlAALLSA-YrpvakKYKLSPIVGSATHTSKShdlvdiadtklqhEALHHFRVGTKDLLVSTSVLEEGIDVSATNLIIRFDPPPN 437
                 4568999999965333344422.235555888888888866666666667777777777**************************************** PP

                 HHHHHHHHTTSS CS
  Helicase_C  97 vtsyiqriGRtg 108
                 ++sy+q++GR+ 
  KKY21399.1 438 LRSYVQSRGRAR 449
                 **********94 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   2.3e-15   4.6e-12      25     172 ..       6     153 ..       5     156 .. 0.81

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 2.3e-15
                 SSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH.H..TTCSEEEEEHHHHHHHHHCTSSHCT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x..xxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  25 sGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl.d..ngvdivvgtpgrlddllstgklnls 120
                 sGKT ++++ + +++   + ++ + + +++Pt  La+q++  +++ +  +++r+l+ + +v+  ++ ++  +  ++ ++vv+tp  l d ++ g + ++
  KKY21399.1   6 SGKTQVAIMRIAAELE--RCEPDKLVWMLCPTVHLAQQQCMVVQNQLPAYQCRTLSSLDDVDHWSNATVWfKalENFHVVVSTPAVLYDAMTHGFVAIQ 102
                 8***********9994..699999999*****************99999999999999988887777776422377*************99999999** PP

                 TEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBS.HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx.xx RF
        DEAD 121 qvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlp.kd 172
                 ++ +lV+DEa+  +++   ++i + + +  q ++ g+  +  ++ l+A +  + 
  KKY21399.1 103 KIALLVFDEAHHCQKKHATNKIMQEFYHP-QLSKGGPvPH--ILGLTASPAdSA 153
                 ***************95555554433332.4455566444..888998887555 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   2.4e-10   4.8e-07      35     170 ..       6     150 ..       6     151 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 2.4e-10
                 STHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG..........GEEEESSS-B--.......-SEEEEEHHHHHHTH........ CS
      ResIII  35 tGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseayke......igkkvsgdkkkakekdstnkkilvttiqsldadseeeeeese 126
                 +GKT va ++++++l + ++ + + +l+p+ +l +q    +++ l+ ++ +          +s+ +  +  k+ +n +++v+t   l+ ++     ++ 
  KKY21399.1   6 SGKTQVAiMRIAAELERCEPDKLVWMLCPTVHLAQQQCMVVQNQLPAYQCRtlssldDVDHWSNATVWF--KALENFHVVVSTPAVLYDAM-----THG 97 
                 7******99*****************************9999999998644444444444455555555..889999999****9999999.....666 PP

                 HHHTTT-SEEEEETGGGTTS.TTTHHHHHT---.........SEEEEEESS-S CS
      ResIII 127 ellrdrfdviiiDEaHrlgakkswreilekfke.........avllglTATpe 170
                     +++ ++++DEaH+ ++k++ ++i++ f +           +lglTA p 
  KKY21399.1  98 FVAIQKIALLVFDEAHHCQKKHATNKIMQEFYHpqlskggpvPHILGLTASPA 150
                 66777888************999999*9999666788899999*******985 PP

>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.4   2.9e+03      51      67 .]     580     596 ..     564     596 .. 0.85
   2 ?   13.9   0.1   3.4e-05     0.068      21      67 .]    1350    1397 ..    1347    1397 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.4
                 SHHHHHHHHHHHHHHHH CS
        dsrm  51 nKKeAeqsAAedalekL 67 
                 + K+A+++++ +a+ kL
  KKY21399.1 580 TQKQAKKDCSFQAYIKL 596
                 569*******9998665 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 3.4e-05
                  EEEESSTSSSEEEEEEEEETTEEEE.EEEESSHHHHHHHHHHHHHHHH CS
        dsrm   21 vseegpphslpkFvvtvkvngklyg.sGvgsnKKeAeqsAAedalekL 67  
                   s+ +p+ s+ + ++t+ +++ +y  +  + +K eA+ +AAe a+ekL
  KKY21399.1 1350 SSSSTPSQSHSSIQCTILIDNVEYWkISDAESKMEAQARAAEGAIEKL 1397
                  56677777777**********8887577778**************998 PP

>> UxaC  Glucuronate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   3.4e-05     0.068      25     106 ..    1165    1251 ..    1153    1270 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.4e-05
        UxaC   25 kklPiiDyhchlspk.eiaenkkfenltevw.le...gDhYkWramRanGveeklitGdasdkekflawaktvpktign.PlyhWthl 106 
                  +++ i+ y c  s     ++n  ++ +t+   l+   + hY W+ mR nG + +lit +++ + +++ ++  + + i    +y W  l
  KKY21399.1 1165 ANIHILSYFCLSSSYtTQTHNPVYDPVTKQTtLTphlTHHYLWQFMRHNGSP-DLITAQTHCQSRYTTLSPQIHQYIHHgATYPWIPL 1251
                  566666666655543034556667766654313344478***********87.69***************999998865268999753 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  16.8    0.0081        16      63      88 ..    1329    1354 ..    1316    1372 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0081
       SR-25   63 ssssssssssssssssssssssssdd 88  
                  ++ssssssssss s+ss ssssss++
  KKY21399.1 1329 NASSSSSSSSSSPSTSSLSSSSSSST 1354
                  45555555566666666555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.06u 0.31s 00:00:01.37 Elapsed: 00:00:00.50
# Mc/sec: 8504.34
//
Query:       KKY21400.1  [L=279]
Description: putative proteasome component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-58  197.4   0.0    1.7e-32  112.4   0.0    2.2  2  Proteasome      Proteasome subunit
    9.4e-11   41.2   0.1    3.1e-10   39.5   0.0    1.9  2  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   0.0   1.9e-36   1.7e-32       1     119 [.      28     145 ..      28     166 .. 0.94
   2 !   83.1   0.0   1.9e-27   1.7e-23     112     190 .]     168     243 ..     157     243 .. 0.94

  Alignments for each domain:
  == domain 1  score: 112.4 bits;  conditional E-value: 1.9e-36
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHH.HHHHHHSSGTCHHHHHHHHHHHHHHHHHH CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaq.lyrlrygrpipverlvarvaaklqaytqr 98 
                 v++G t++Gik+++gvvla++k+++  s l+++ +++K++ i+++ig++++G+ +D+r+lv++ar+  +  y+  y++ +p+++lv+ va+ +q+ tq+
  KKY21400.1  28 VNQGVTSLGIKATNGVVLATEKKSS--SPLIDPPSLSKVSLITPNIGMVYSGMGPDYRVLVDKARKVSHtGYKRIYNEYPPTRILVQDVARVVQEATQS 124
                 789**********************..**************************************9777258899************************ PP

                 CTTTTTSEEEEEEEEETTTEE CS
  Proteasome  99 sgrrpfgvslliagvdeeggp 119
                 +g+rp+gvslliag+de  +p
  KKY21400.1 125 GGVRPYGVSLLIAGWDEGIEP 145
                 ****************86655 PP

  == domain 2  score: 83.1 bits;  conditional E-value: 1.9e-27
                 EEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEEE CS
  Proteasome 112 gvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievavi 190
                 g+  +ggp+Lyq+dpsG+y+ +k a+aiG+g+++akt+lek+y+edl+le+av++a+ +lke++e++ ++g+++e++++
  KKY21400.1 168 GIL-KGGPSLYQVDPSGTYFPWK-ATAIGKGATSAKTFLEKRYNEDLELEDAVHIALLTLKETIEGE-MNGNTVEIGIV 243
                 444.788***************8.*****************************************77.********997 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   3.5e-14   3.1e-10       1      23 []       5      27 ..       5      27 .. 0.98
   2 ?   -1.3   0.0       0.2   1.8e+03      14      18 ..     176     180 ..     175     180 .. 0.88

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 3.5e-14
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    Y +slttFSP+G+L Q+EYA++A
      KKY21400.1  5 YSFSLTTFSPSGKLVQIEYALNA 27
                    99*******************98 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.2
  Proteasome_A_N  14 LfQVE 18 
                     L+QV+
      KKY21400.1 176 LYQVD 180
                     9***7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1973.50
//
Query:       KKY21401.1  [L=193]
Description: hypothetical protein UCRPC4_g03664 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      107  (0.00596798); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.50
# Mc/sec: 1155.58
//
Query:       KKY21402.1  [L=463]
Description: putative ribosome assembly and transport protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-18   65.9   1.1    2.3e-17   63.6   1.1    2.3  1  SRP40_C   SRP40, C-terminal domain


Domain annotation for each model (and alignments):
>> SRP40_C  SRP40, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   1.1   1.3e-21   2.3e-17      23      76 .]     408     461 ..     396     461 .. 0.85

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 1.3e-21
     SRP40_C  23 yeakkgaeddyGekanedLiktrGkgFrkeKnKkKrgsyrggeIdtesvnSikF 76 
                 y +++  + dy+e+a++dLi+trGkgF+keKnKkKrgsyrgg Id+   +++kF
  KKY21402.1 408 YLSNEYISYDYAERAYNDLIVTRGKGFTKEKNKKKRGSYRGGMIDIGPGKGFKF 461
                 4444444789***********************************998888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1916  (0.106866); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                       190  (0.0105974); expected 17.9 (0.001)
Passed Fwd filter:                        86  (0.0047967); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.21u 0.40s 00:00:02.61 Elapsed: 00:00:00.73
# Mc/sec: 1904.88
//
Query:       KKY21403.1  [L=972]
Description: putative l-aminoadipate-semialdehyde dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-23   83.3   0.0    2.6e-23   82.3   0.0    1.4  2  AMP-binding    AMP-binding enzyme
    6.2e-18   64.9   0.0    9.7e-18   64.3   0.0    1.3  1  NAD_binding_4  Male sterility protein
    1.1e-05   25.7   0.0    2.7e-05   24.5   0.0    1.8  1  PP-binding     Phosphopantetheine attachment site
     0.0063   16.0   0.0      0.011   15.2   0.0    1.3  1  Epimerase      NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.0   5.8e-27   2.6e-23       2     334 ..      16     347 ..      15     352 .. 0.83
   2 ?   -3.5   0.0      0.67     3e+03     407     422 ..     406     421 ..     399     422 .. 0.82

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 5.8e-27
                  HHHHHHSTTSEEEEE......CCSTEEEEHHHHHHHHHHHHHHHH.HTTS.STT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHH CS
  AMP-binding   2 eeqaaktpdkvalvd......sgegqtlTYreldervnrlAagLr.slGv.kkgdrVaillpnspewvvallailkaGavvvplnptltaeelayile 91 
                  +eq +  p++v + +      s++ + +T r + ++vn++A  L+ slG   + ++++ + p  +++ +++la++k G v    +p+ + +    + +
   KKY21403.1  16 DEQSKADPERVIYSYstaadpSKGFRDVTTRAFANAVNKMALLLMaSLGNpSDFEVIGYIGPSDIRFAILALAAMKTGYVMLFNSPRNSLDGHINVTT 113
                  688899999999977999999999*********************99999777789****************************************** PP

                  HHTESEEEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHH CS
  AMP-binding  92 dseakvliatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanva 189
                  +s +k+    v +   ++++++ ++ ++ ++v++ d d ll+ e+++       k+    +  +   +d+++++ TSG+TG PK +  +h+ l+ + +
   KKY21403.1 114 QSSCKIWA--VPDPRPAMVDDILDA-RQMRTVLIPDLDHLLNDECVEVYR---YKK----TF-SEAIKDPVLVLHTSGSTGFPKPITWTHETLAIFDK 200
                  *******9..766668999999997.688899999999988886665444...222....22.45789*************************99955 PP

                  HHHHHHC.SCCTT........T-EE.EESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHH.HHT-SEEEEEHHHHHHHHHCCCHHCH CS
  AMP-binding 190 slkletr.fklke........ddvv.lsilplahifglilelllallsGatvvllpkdaaldpklllelie.klkvtviagvPrvleallesgalkaa 276
                   ++l++   k  +        d+++ +s lp +h++g  + + ++++ G ++ + p + + + +++ +++e +   + + ++P++le ++  ++    
   KKY21403.1 201 HHDLPPIeGK--StlitdwasDERMiYSGLPHFHAAGAFFHIGAVFFYGLRIAFGPASVPINTHIISNVLEsRNDFQGVIVAPAILEEIAGLPEYL-- 294
                  5554444211..12345567777775777********99*****************999977677766665256799999*********9975443.. PP

                  HHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCT CS
  AMP-binding 277 kkakdlsslrlvllggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkk 334
                      +l  lr+v  +g++l  ++ + +++++  +v ++ G TE ++ ++ + +++d++
   KKY21403.1 295 ---VKLRNLRFVAYAGGALHYAAGTTISKIC--RVDNCIGSTEGAMYAVLVADPDDWQ 347
                  ...26888****9****************95..599**********997755566655 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.67
                  TSEEEEEEECCCEEEE CS
  AMP-binding 407 dGyleivgRkkdlikl 422
                   G+  + gR++d+i+l
   KKY21403.1 406 TGRWLYRGRADDIIVL 421
                  5777899*******98 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   2.2e-21   9.7e-18      71     257 .]     661     835 ..     634     835 .. 0.94

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 2.2e-21
                    SGGGG--HHHHHHHHHH--EEEE--SS-S.STTSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE.GGGTTS-TTT--SSS-H......HHH--E CS
  NAD_binding_4  71 eprlGLseedlqelaeevdviihsaAtvnfdepykellrvNveGtrevlelakklkklkvllhvST.ayvngeregeveekvyeegekeekldede 165
                    ++++GL+   +++l + +++iih+   vnf+ +++  +++ + G+r+++++ ++ +++ ++ +vS+ a+v+++ +++              + e  
     KKY21403.1 661 MSKFGLNGGIYDDLLHDTTHIIHNQWPVNFNWSLSS-FEPHIAGVRNLVDFTAQSQHNASIFFVSSiATVENNVSNKP-------------VPEAP 742
                    578*******************************97.6899*************************999999999765.............78999 PP

                    EEETTTCCCHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-..-SSST---TTSHHHHHHHHHHHH-EEES-SB---TT--EEEHHHHHHHH CS
  NAD_binding_4 166 raklkglpntYeqsKalaEklvrearrrsglpvvivRpsiitg..esktGwingsdlgirgllgliakgvlpeilgdkeavldlvpvDyvanai 257
                     ++l   + +Y  sK +aE ++++a+++s++  ++ R++ i g   s+ G+ n ++++++ +  ++ + ++p++l+     + +vpvD+van+i
     KKY21403.1 743 VTDLSCASMGYGSSKLAAELVLQAAGEQSKIVSSVCRVGQIAGpiGSERGQWNPKEWLPTIIATSAFMAKIPSTLAGL-DICSWVPVDIVANII 835
                    999999999*******************************************************************97.69**********986 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   5.9e-09   2.7e-05       2      66 ..     559     625 ..     558     626 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 5.9e-09
  PP-binding   2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgv.....eiplsdlfehptlaelaay 66 
                  l++lv++++g p   i+p +d f  GlDSll+ +++ +l++         +++ + ++++pt+++la++
  KKY21403.1 559 SLLSLVEKLIGKP---IKPRDDMFAAGLDSLLVFQITQSLNASIPPtrqssQLSNTLVYANPTVEQLANA 625
                 5899999999998...999***********************9944455559999999*********985 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.5e-06     0.011      78     191 ..     687     805 ..     675     835 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.5e-06
                 HHHHHSHHHHHHHHTHHHHHHHHHHHHHTCT.EEEEEEEGGGGTSCSS.SS..BSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESE CS
   Epimerase  78 aassedpadfieknlqgtlnlleaarkagvk.rllflsSsevYGkdae.qp..keettltgpl.kpnspYaaaKlageklveayaaqyglnaiilrlfn 171
                 +++++     +e +++g++nl++   +++ +  + f+sS ++  ++ + +p  +  +t    l   +  Y+ +Kla+e +++a+ +q ++   + r+  
  KKY21403.1 687 PVNFNWSLSSFEPHIAGVRNLVDFTAQSQHNaSIFFVSSIATVENNVSnKPvpEAPVT---DLsCASMGYGSSKLAAELVLQAAGEQSKIVSSVCRVGQ 782
                 5666666677888999*******99987666489999997777766663464244444...4557999******************************* PP

                 EESTT...S-TTSTTSHHHHHHH CS
   Epimerase 172 lyGpr...ngegevsrvipalir 191
                 + Gp    +g+ +++  +p +i+
  KKY21403.1 783 IAGPIgseRGQWNPKEWLPTIIA 805
                 ****9776666667777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (972 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.55
# Mc/sec: 5287.82
//
Query:       KKY21404.1  [L=944]
Description: putative wd repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-17   64.0   8.7     0.0028   18.5   0.0    8.3  8  WD40         WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.014   15.7   2.6        8.2    6.8   0.0    5.0  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.1e-07    0.0028       3      37 ..      83     120 ..      81     120 .. 0.85
   2 ?    0.0   0.2      0.21   1.9e+03      13      37 ..     141     162 ..     128     163 .. 0.69
   3 !    6.4   0.0     0.002        18       4      38 .]     360     398 ..     358     398 .. 0.62
   4 ?   -1.9   0.0      0.85   7.7e+03      22      36 ..     435     449 ..     413     449 .. 0.73
   5 !    4.5   0.0     0.008        72       8      36 ..     462     493 ..     457     495 .. 0.81
   6 !   10.7   0.2   8.9e-05       0.8       3      37 ..     503     538 ..     501     539 .. 0.87
   7 ?    3.4   0.0     0.018   1.6e+02      24      38 .]     630     645 ..     595     645 .. 0.75
   8 !   16.1   0.0   1.7e-06     0.016       6      38 .]     655     695 ..     649     695 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.1e-07
                 EEEEEESS.SSEEEEEEETTSSEEEE.E.ETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlas.G.sdDgtvriW 37 
                 ++ +lt H ++++++afspd ++la+ G + Dg + iW
  KKY21404.1  83 PISILTEHsFGIRAIAFSPDAKFLATlGdTNDGFLFIW 120
                 78899***766*************9855335*****99 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.21
                 EEEEEEETTSSE....EEEEETTSEEEEE CS
        WD40  13 vtslafspdgaw....lasGsdDgtvriW 37 
                 v+++      +w    +++ +  ++v++W
  KKY21404.1 141 VNDM------TWmgnsVVTVG-TRHVKVW 162
                 6777......77666567778.99***** PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.002
                 EEEEESS.SS...EEEEEEETTSSEEEE.EETTSEEEEEE CS
        WD40   4 lrtltGH.ss...vtslafspdgawlas.GsdDgtvriWd 38 
                 + +l GH +s   v +++    +a +++ +s Dg vr Wd
  KKY21404.1 360 QASLQGHhTSvqgVEAIKGKERKAEFVTwSS-DGDVRCWD 398
                 5689999877334444443333333454468.*******8 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.85
                 SSEEEEEETTSEEEE CS
        WD40  22 gawlasGsdDgtvri 36 
                 g+ ++sG++ g +r+
  KKY21404.1 435 GHRFISGDKYGVIRV 449
                 444568998999886 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.008
                 ESS.SSEEEEE..EETTSSEEEEEETTSEEEE CS
        WD40   8 tGH.ssvtsla..fspdgawlasGsdDgtvri 36 
                 ++H   +t+la   ++ +++la++++D+ + +
  KKY21404.1 462 RAHgAEITDLAiyECSTSTLLATAGRDRVIQL 493
                 58966699999887777788999999**9977 PP

  == domain 6  score: 10.7 bits;  conditional E-value: 8.9e-05
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +++t++ H + v+ + f  +g+ l+s+s D+tv + 
  KKY21404.1 503 LIQTIDHHvGAVNNVLFTNEGHRLLSSSADRTVVVH 538
                 56788889888****************99****885 PP

  == domain 7  score: 3.4 bits;  conditional E-value: 0.018
                 EEE..EEETTSEEEEEE CS
        WD40  24 wla..sGsdDgtvriWd 38 
                 +l+  s s D++vr++d
  KKY21404.1 630 YLIgiS-STDKSVRVYD 645
                 454214.55******98 PP

  == domain 8  score: 16.1 bits;  conditional E-value: 1.7e-06
                 EEESS.SSEEEEE........EETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtsla........fspdgawlasGsdDgtvriWd 38 
                 ++ GH  ++t++a         s++   l++ + Dgtv+iWd
  KKY21404.1 655 EF-GHsEGITDVAilefettrGSSSTIKLVTTGLDGTVMIWD 695
                 45.9*666****9999999887777777887777*******9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.07   6.2e+02      39      60 ..      92     113 ..      85     149 .. 0.66
   2 ?   -1.6   0.0      0.39   3.5e+03       6      21 ..     320     335 ..     318     347 .. 0.84
   3 ?   -3.3   0.0       1.3   1.2e+04      26      52 ..     370     394 ..     357     398 .. 0.68
   4 ?    6.8   0.0   0.00092       8.2       4      72 ..     476     545 ..     473     563 .. 0.83
   5 ?    0.1   0.0      0.11     1e+03      52      82 ..     577     607 ..     568     618 .. 0.88
   6 ?    1.9   0.0     0.031   2.8e+02      49      75 ..     628     654 ..     626     672 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.07
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdg 60 
                    +r++a++pd k+La   + +
   KKY21404.1  92 FGIRAIAFSPDAKFLATLGDTN 113
                  5699999*******99864433 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.39
  ANAPC4_WD40   6 tmDLiAlatedgellv 21 
                  ++DL+Ala+  g+l++
   KKY21404.1 320 KKDLLALASILGRLVL 335
                  79*****998777765 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.3
  ANAPC4_WD40  26 gqrvwtleedkedsevrsLaWkpdgkl 52 
                   q v  +  ++++++ + + W+ dg +
   KKY21404.1 370 VQGVEAI--KGKERKAEFVTWSSDGDV 394
                  4555555..567777888888888865 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.00092
  ANAPC4_WD40   4 cptmDLiAlatedgellvfRlngqrvwtl.eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkv 72 
                  c+t  L+A a  d  +++f  + + +  + + d++ + v+++ + ++g+ L  + +d +v ++d  ++ +
   KKY21404.1 476 CSTSTLLATAGRDRVIQLFTASTKSLDLIqTIDHHVGAVNNVLFTNEGHRLLSSSADRTVVVHDRVTKST 545
                  899999**********999999987666644589999***********************9999766554 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.11
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhslsvksek 82 
                   L+v++ + ++  +d ++g+  hs+++++++
   KKY21404.1 577 WLMVSTMNHQITRVDLSTGQQEHSFKAGDTE 607
                  68999********************999875 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.031
  ANAPC4_WD40  49 dgklLavaysdgevrlldaesgkvvhs 75 
                  +g l+ ++  d +vr++d+++g+++  
   KKY21404.1 628 SGYLIGISSTDKSVRVYDISKGQLITR 654
                  688899999*************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (944 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.35s 00:00:01.14 Elapsed: 00:00:00.54
# Mc/sec: 5235.73
//
Query:       KKY21405.1  [L=1030]
Description: putative chromosome transmission fidelity factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-58  196.8   0.0    3.4e-57  193.0   0.0    2.3  2  RFC1      Replication factor RFC1 C terminal domain
      4e-13   49.6   0.0    1.4e-12   47.8   0.0    2.1  1  BRCT      BRCA1 C Terminus (BRCT) domain
    3.2e-09   37.3   0.0    8.9e-09   35.9   0.0    1.8  1  AAA       ATPase family associated with various cellular acti
    5.7e-06   26.4   0.0    1.6e-05   24.9   0.0    1.7  1  Rad17     Rad17 P-loop domain
    0.00054   20.2   0.1     0.0031   17.8   0.0    2.4  2  AAA_22    AAA domain
    0.00057   20.1   0.2     0.0041   17.3   0.2    2.4  1  AAA_33    AAA domain
     0.0048   16.6   0.1      0.014   15.1   0.1    1.8  1  AAA_30    AAA domain
      0.006   16.4   0.0      0.012   15.4   0.0    1.4  1  RuvB_N    Holliday junction DNA helicase RuvB P-loop domain
     0.0065   16.9   0.0       0.03   14.7   0.0    2.0  1  AAA_16    AAA ATPase domain
  ------ inclusion threshold ------
       0.06   13.3   0.0       0.17   11.8   0.0    1.8  1  AAA_5     AAA domain (dynein-related subfamily)
      0.061   13.9   0.1       0.25   11.9   0.1    2.1  1  AAA_18    AAA domain
      0.098   12.7   0.0       0.39   10.7   0.0    2.1  2  AAA_14    AAA domain


Domain annotation for each model (and alignments):
>> RFC1  Replication factor RFC1 C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.28   4.2e+02      88     122 ..     636     670 ..     614     684 .. 0.82
   2 !  193.0   0.0   2.3e-60   3.4e-57       1     156 [.     763     915 ..     763     916 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.28
                 HHHHHHS---------HHHHHHTTT--SHHHHHHH CS
        RFC1  88 lkkklvkpLkeegkdgveevielmdeysLtkedvd 122
                 l  ++++ L +  ++ + +vi+++++ +L k ++d
  KKY21405.1 636 LSTQVLDALIQGTHADIRQVINMISTAKLDKTNMD 670
                 4566778899966677*************998866 PP

  == domain 2  score: 193.0 bits;  conditional E-value: 2.3e-60
                 HHHHHHHHHHHTT.SS-GGGHHHHHHHHTHHHHHTT-EE-SS-----SHHHHHHHHHHHHHHHHHHHTTTTT------HHHHHTTTHHHHHHHHS---- CS
        RFC1   1 isdgDlvdkkirs.eqnWsLlpthavlssvlPaslvrgslegrisFpswLGknSktnKnkRllqelqshlrlktsaskselrldylpllkkklvkpLke 98 
                 isdgDlvd++i++ +q+WsL+pthav+s v+Pas+++g+l+g++ F+swLG+nSk +K +R+++e+q h+rl+ s++++e+r++ylp l++++vk+L++
  KKY21405.1 763 ISDGDLVDRMIHGsQQQWSLMPTHAVFSFVRPASYAYGNLNGQVGFTSWLGQNSKFGKLSRFVKEIQGHMRLRASGDRHEIRQQYLPALWNRTVKRLMD 861
                 9************************************************************************************************** PP

                 -----HHHHHHTTT--SHHHHHHHHHH-X...XXXXXXXXXXXXXXXXXXXXXXXXXX CS
        RFC1  99 egkdgveevielmdeysLtkedvdslvelslvkgekkkedplkkidtkvKaaftrkyn 156
                 +gk++v+e+i+lmd+y+Ltked+d++ el l+  e+++e++   id+ +K++ftr+yn
  KKY21405.1 862 DGKEAVDEIIDLMDSYFLTKEDYDAMIELGLG--EMDEEKV--RIDPTTKSSFTRQYN 915
                 *****************************777..6666666..**************9 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   9.3e-16   1.4e-12       3      79 .]     289     364 ..     287     364 .. 0.97

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 9.3e-16
                 TTTTTTEEEEEEESTSSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEETHHHHHHH CS
        BRCT   3 ellfhgckfvitgvldnftrdeleelikehGGkvttevskktthlvvgepesrslkylealklnipivheewlldci 79 
                 e+++ g++fv+tg l+++ rde + l+k +GGkvtt+ sk+t+++v g+  ++ +k+++  kl  ++++e+ l+++i
  KKY21405.1 289 ENCLAGLTFVFTGILESISRDEGQALVKRYGGKVTTAPSKNTSYVVLGSE-AGPKKLETIRKLSLKTIDEDGLFALI 364
                 799***********************************************.**********************9987 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   5.9e-12   8.9e-09       2      74 ..     488     571 ..     487     603 .. 0.73

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 5.9e-12
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS........STTHHHHHHHHHHHHHHHTS...TSEEEEEETGGGHHHHH CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellsk........yvgesekkirelfkeakeka...kpsilfiDEidalaksr 74 
                 +l+GppG+GKT++a+ +ak  g +++e+++s+ +sk         v ++ + +  +  + k+ +   ++ +l++DE+d +   +
  KKY21405.1 488 MLHGPPGIGKTTAAHLIAKLEGYDVVETNASDTRSKklvetglkGVLDTTSLLGYFAGDGKKVEaskRKLCLVMDEVDGMSAGD 571
                 79********************************766666666644444444444444444444675569********996655 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   1.1e-08   1.6e-05       7     100 ..     434     538 ..     430     551 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.1e-08
       Rad17   7 elWfekykPekaeelavhkkkieevkewlkadvLesrkkr............iLLisGPsGCgkstvvkvLskelgiklrewlnpvslkepdnqksdfk 93 
                  lW eky P  ++ +   k  +e++++wl+    +s+ +               ++ GP+G gk+t+ + ++k  g+++ e  n+   ++ +  ++ +k
  KKY21405.1 434 RLWTEKYAPTSLQAVCGNKGLVEKLQRWLRNWHYNSNFQFkkagadgtgiyrAAMLHGPPGIGKTTAAHLIAKLEGYDVVET-NASDTRSKKLVETGLK 531
                 68***************************99888775322346889999777789************************995.6666689998999999 PP

       Rad17  94 gltekes 100
                 g++++ s
  KKY21405.1 532 GVLDTTS 538
                 8888776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       5.1   7.7e+03      44      87 ..     151     196 ..     125     201 .. 0.60
   2 !   17.8   0.0   2.1e-06    0.0031       8     131 ..     487     595 ..     484     601 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.1
      AAA_22  44 fvtlpsst.sskdllrellralglelkaerlsseell.ealeqalr 87 
                  vt +sst   k  + ++  +l+++++a+ ++   ++ +al + ++
  KKY21405.1 151 NVTGKSSTrAKKHDFDMVDAELEDDKSASKKNANGVRtSALLKSSK 196
                 5666666655666677777788877777666666666555555555 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 2.1e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseell.ealeqalraravielliiDEaqhlrs 105
                  +++G++G+GKTt +  +++           + +vv+ +++   s k + + l   l+      + s+  ++     +   +++ + +l+ DE++ + s
  KKY21405.1 487 AMLHGPPGIGKTTAAHLIAKLE---------GYDVVETNASDTRSKKLVETGLKGVLD------TTSLLGYFaGDGKKVEASKR-KLCLVMDEVDGM-S 568
                 689****************998.........9*****999999966555444444444......35677777444444444444.59**********.5 PP

      AAA_22 106 ...eealeeLrsllnlsrkgvqliLvGtp 131
                       +  L s+++  ++++++iL+  +
  KKY21405.1 569 agdRGGVGALASIAK--KTNIPIILICNE 595
                 5569999999999**..********9765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2   2.7e-06    0.0041       3      33 ..     488     538 ..     487     687 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.7e-06
      AAA_33   3 llvGlpGsGKstlaerllkklgavllssdt....................l 33 
                 +l+G+pG GK+t a+ ++k +g+ ++++++                     
  KKY21405.1 488 MLHGPPGIGKTTAAHLIAKLEGYDVVETNAsdtrskklvetglkgvldttS 538
                 89*************999999999998877555555554444444444440 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   9.4e-06     0.014      20     129 ..     486     599 ..     478     658 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9.4e-06
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa.eelgieastiakllkrlk...grarlepg.tllivDEagmv...dtkqlaallk 110
                  a+l+Gp+G GKtta   ++++   +g++v+    + + +k+L  ++l    +t+  l    +   ++++ +++  +l+ DE+  +   d   + al++
  KKY21405.1 486 AAMLHGPPGIGKTTAAHLIAKL---EGYDVVETNASDTRSKKLVeTGLKGVLDTTSLLG-YFAgdgKKVEASKRkLCLVMDEVDGMsagDRGGVGALAS 580
                 6899**********98877665...5899997766666666665045554445554444.333477444555553789999985552557778999*** PP

      AAA_30 111 aaekagakvilvGDerQla 129
                 +a+k+++ +il+  er l+
  KKY21405.1 581 IAKKTNIPIILICNERRLP 599
                 *******999998887776 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     8e-06     0.012      36      65 ..     487     516 ..     473     533 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8e-06
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkits 65 
                  +l+GpPG+Gktt a++iak  g ++  t 
  KKY21405.1 487 AMLHGPPGIGKTTAAHLIAKLEGYDVVETN 516
                 589****************97777766655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     2e-05      0.03      20      62 ..     478     519 ..     470     572 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2e-05
      AAA_16  20 rsgrp..elvllsGesGvGKsslvrellralekdggiflrgkcdq 62 
                 ++g++  ++ +l+G++G+GK++ +  +++    d   ++++++ +
  KKY21405.1 478 ADGTGiyRAAMLHGPPGIGKTTAAHLIAKLEGYD---VVETNASD 519
                 4455577999**************9999744444...44444444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.17       3      75 ..     488     565 ..     486     569 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--....TT--HHHHH--B--..........--------G-SEEEEESGG CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqlt....rdtteedlkgrreik.ngttslvdsplvraaregeilvlDEve 75 
                 +L GppG+gK++ a  +a++ +  v++ + +    +++ e+ lkg ++++   ++   d++ v+a +++  lv+DEv+
  KKY21405.1 488 MLHGPPGIGKTTAAHLIAKLEGYDVVETNASdtrsKKLVETGLKGVLDTTsLLGYFAGDGKKVEASKRKLCLVMDEVD 565
                 799****************99888887766511113333444444444444445555666666666677777777765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00017      0.25       3      30 ..     489     519 ..     488     545 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
      AAA_18   3 ltGtpGvGKttlakeLskrlgf...gvnlrd 30 
                 l G+pG GKtt a+ ++k++g+    +n +d
  KKY21405.1 489 LHGPPGIGKTTAAHLIAKLEGYdvvETNASD 519
                 78****************9988777555544 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00026      0.39       4      74 ..     486     565 ..     484     591 .. 0.73
   2 ?   -3.7   0.0       7.6   1.1e+04      79      92 ..     852     865 ..     846     868 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00026
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe........kllelileklke......ekktylflDEiq 74 
                 + ++ G+  +GKTt ++ ++k +     ++++ n  d r kkl ++         +ll ++     +      ++k +l++DE+ 
  KKY21405.1 486 AAMLHGPPGIGKTTAAHLIAKLEG---YDVVETNASDTRSKKLVETGlkgvldttSLLGYFAGD--GkkveasKRKLCLVMDEVD 565
                 67899**********988886666...9999999999999775533222333333566666654..034667889999*****97 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7.6
      AAA_14  79 wekalkslvdegkn 92 
                 w +++k+l+d+gk+
  KKY21405.1 852 WNRTVKRLMDDGKE 865
                 999*******9954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1030 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1728  (0.0963802); expected 358.6 (0.02)
Passed bias filter:                      707  (0.0394333); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.17u 0.40s 00:00:01.56 Elapsed: 00:00:00.53
# Mc/sec: 5867.12
//
Query:       KKY21406.1  [L=171]
Description: putative mitochondrial 54s ribosomal protein 47 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-26   92.2   0.1    3.3e-26   91.8   0.1    1.1  1  Ribosomal_L16  Ribosomal protein L16p/L10e


Domain annotation for each model (and alignments):
>> Ribosomal_L16  Ribosomal protein L16p/L10e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.1   1.9e-30   3.3e-26      13     121 ..       1     109 [.       1     111 [. 0.94

  Alignments for each domain:
  == domain 1  score: 91.8 bits;  conditional E-value: 1.9e-30
                    SSTSXXXSXXXXXESXEEEEES.SXEEEEHHHHHHHHHHHCTCCCCTSXCEEXXSXXXXEEEEE-SS-TTTSSSSXEEEEEEEEEXSSCEEEEETT CS
  Ribosomal_L16  13 yirgvstkgtklefgdygLval.ekgqltaealeaariainrylkkkrgkklwirvfphhpvtkkagedRmgkGkGkpegwvarvkigqiifeika 107
                    +++g st+gt+l +gdygL++  ++ +++a++++ a+ +i+++l+   + kl+ rv +++ v   ++e+RmgkGkGk+++w+arv + ++ife+ +
     KKY21406.1   1 MPTGGSTRGTTLVWGDYGLRMIdHDRRVSAKQFKNAEDTIRKRLR-GMNYKLYKRVSANIGVYTSGNEVRMGKGKGKFDYWAARVPVHRVIFELIG 95 
                    57899***************997999*******************.4444********************************************66 PP

                    XXXSHHHHHHHHHH CS
  Ribosomal_L16 108 gvneeiakealrra 121
                    +++e+++++a+r+a
     KKY21406.1  96 EIHEKVVRDAFRLA 109
                    68**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1249.09
//
Query:       KKY21407.1  [L=127]
Description: hypothetical protein UCRPC4_g03670 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 937.86
//
Query:       KKY21408.1  [L=359]
Description: putative dna replication factor c subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-10   40.4   0.0    4.7e-10   39.5   0.0    1.5  1  DNA_pol3_delta2  DNA polymerase III, delta subunit
    4.2e-05   24.0   0.1     0.0001   22.8   0.1    1.6  1  AAA              ATPase family associated with various cellul
    0.00015   22.1   0.0     0.0012   19.2   0.0    2.3  2  Rep_fac_C        Replication factor C C-terminal domain
    0.00021   21.7   0.1      0.011   16.1   0.1    2.7  2  AAA_16           AAA ATPase domain
    0.00054   20.2   0.2      0.011   16.0   0.2    2.6  2  AAA_22           AAA domain
     0.0024   18.4   0.0     0.0064   17.0   0.0    1.6  1  ABC_tran         ABC transporter
  ------ inclusion threshold ------
      0.011   15.7   0.0       0.02   14.8   0.0    1.5  1  Rad17            Rad17 P-loop domain
      0.013   15.2   0.2      0.034   13.9   0.2    1.6  1  AAA_24           AAA domain
      0.047   14.2   0.0       0.06   13.8   0.0    1.2  1  AAA_23           AAA domain
       0.25   11.5   0.0       0.38   11.0   0.0    1.2  1  Ribonuclease_T2  Ribonuclease T2 family


Domain annotation for each model (and alignments):
>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   2.6e-13   4.7e-10      22     159 ..      38     184 ..      19     188 .. 0.75

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 2.6e-13
  DNA_pol3_delta2  22 yLfeGdegigkkelalnlakallceeknetk...pcgecksckkieqgkhpDvivi.....eteekersikldqirelieelsrk.preskkki 106
                      +L++G++g+gkk+  l+l +al    +++ k      +  s +k+e + ++ v ++     +  + +r++  + ++e+ ++ +   +   + ki
       KKY21408.1  38 LLIYGPSGAGKKTRILTLLRALYGPGAEKIKidaRVFQTTSNRKLEFNIVSSVYHMeitpsDVGNYDRVVIQELLKEVAQTQQVDlSARQRFKI 131
                      799*******************98777766544455566666677666666666665554333333334444555555444333314557899* PP

  DNA_pol3_delta2 107 iiiedaekmtksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelkf 159
                      ++i++a+ +t+ A+ al +t+E  s n  +iL++++t  ++ +irSR+  +++
       KKY21408.1 132 VVINEADSLTRDAQAALRRTMEKYSPNLRLILLANSTAGIIAPIRSRTLLVRV 184
                      ************************************************98876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   5.6e-08    0.0001       1     123 [.      38     178 ..      38     184 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 5.6e-08
                 EEEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS.............................STTHHHHHHHHHHHHHHHTS......TS.E CS
         AAA   1 vllyGppGtGKTllakavakel...gvefleisgsellsk.............................yvgesekkirelfkeakeka......kp.s 60 
                 +l+yGp G GK + +  + + l   g+e ++i++  +                                +++e  k+++++       +      +  +
  KKY21408.1  38 LLIYGPSGAGKKTRILTLLRALygpGAEKIKIDARVFQTTsnrklefnivssvyhmeitpsdvgnydrvVIQELLKEVAQTQ------QvdlsarQRfK 130
                 699********99999999998555344344443333322234444556666666666666655556655555555555554......1333445344* PP

                 EEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTT CS
         AAA  61 ilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgR 123
                 i++i E+d+l+++            +++L + +++++    ++ +i+ +n+   +  +++ +R
  KKY21408.1 131 IVVINEADSLTRDA-----------QAALRRTMEKYSP---NLRLILLANSTAGIIAPIR-SR 178
                 **********9888...........***********99...699************9999.77 PP

>> Rep_fac_C  Replication factor C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.83   1.5e+03      40      69 ..     108     138 ..     105     141 .. 0.67
   2 !   19.2   0.0   6.7e-07    0.0012       2      88 .]     256     343 ..     251     343 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.83
                 HHHHHHHGCCS....S-HHHHHHHHHHHHHHH CS
   Rep_fac_C  40 ltqlhrvvkeq..eelpeaqkleilellgeie 69 
                 +++l + v +    +l+++q+ +i+ ++ e++
  KKY21408.1 108 IQELLKEVAQTqqVDLSARQRFKIV-VINEAD 138
                 4555555554435569999999999.477765 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 6.7e-07
                 -HHHHHHHHHHHHH....T-HHHHHHHHHHHHHHC---HHHHHHHHHHHGCCS..S-HHHHHHHHHHHHHHHHHHHCTH-HHHHHHHHHHH CS
   Rep_fac_C   2 hpteieeileacln....gdfeeaykklrellvekGysaediltqlhrvvkeqeelpeaqkleilellgeiekrlveGasehlqlsallar 88 
                 +++++ +i++ ++     + + ++++kl  +l  + +++++il++l   ++  + l+e++++e+++ ++++e+r+  G+    +l+a++a+
  KKY21408.1 256 WESLVSQIANDIMRerspQMILTVRAKLY-DLLSHCIPPTMILKTLTFKLIP-K-LDEELRPEVVKWAAFYEHRVKLGSKVIFHLEAFVAK 343
                 45666666666644788899999999998.99999**********9777775.3.89********99*********************996 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   6.3e-06     0.011      19     134 ..      30     144 ..      21     164 .. 0.53
   2 ?    2.4   0.0       0.1   1.8e+02      40     100 ..     263     322 ..     258     346 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.3e-06
      AAA_16  19 vrsgrpelvllsGesGvGK.sslvrellralekdggiflrgkcdql..esaipysalaqalareellrqllde..aesaeleawrekleeala...avp 109
                 ++s++ + +l++G+sG GK ++++ +llral + g+  ++ +++ +  +s+       + l +  ++  +  +  + s+  +++r  ++e l+   +++
  KKY21408.1  30 ASSPDFPHLLIYGPSGAGKkTRIL-TLLRALYGPGAEKIKIDARVFqtTSN-------RKL-EFNIVSSVYHMeiTPSDVGNYDRVVIQELLKevaQTQ 119
                 345555************735555.55558888854445555555521222.......222.1122222222233223344444444444444333555 PP

      AAA_16 110 elagaeasrllellkrllallsrde 134
                 +++ ++++r+  ++ + ++ l+rd+
  KKY21408.1 120 QVDLSARQRFKIVVINEADSLTRDA 144
                 5555555666666655555554443 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.1
      AAA_16  40 lvrellralekdggiflrgkcdql.esaipysalaqalareellrqlldeaesaeleawrek 100
                 +++ ++r+ + + ++++r+k  +l +  ip  +++++l++ +l+ +l++e++  e+  w+++
  KKY21408.1 263 IANDIMRERSPQMILTVRAKLYDLlSHCIPPTMILKTLTF-KLIPKLDEELRP-EVVKWAAF 322
                 445555555555677799999999444488899*****66.*******99777.77777765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2     6e-06     0.011       7     117 ..      37     153 ..      36     169 .. 0.63
   2 ?    0.9   0.0      0.29   5.2e+02      38      89 ..     238     290 ..     213     298 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst..sskdllrellralglelka................erlsseellealeqalr 87 
                 +l+++G+sG+GK t + +ll+ l        +++e +++++ +    s ++l      ++ ++  +                ++l +e   ++  + + 
  KKY21408.1  37 HLLIYGPSGAGKKTRILTLLRALY------GPGAEKIKIDARVFQttSNRKL----EFNIVSSVYHmeitpsdvgnydrvviQELLKEVAQTQQVDLSA 125
                 799********8777777777762......2577777777777764344444....4444444444445589888887777544444443433334444 PP

      AAA_22  88 aravielliiDEaqhlrseealeeLrslln 117
                 +++  ++++i Ea+ l + +a   Lr+ ++
  KKY21408.1 126 RQRF-KIVVINEADSL-TRDAQAALRRTME 153
                 4444.8**********.8888888877776 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.29
      AAA_22  38 erpevvfvtlpsst...sskdllrellralglelkaerlsseellealeqalrar 89 
                 ++p+++++t + +    ++++l +++++++ +e++   +    ++++l++ l+++
  KKY21408.1 238 PSPSTLSFTEKTPIpppDWESLVSQIANDIMRERSP--QMILTVRAKLYDLLSHC 290
                 466666444444444558999999999999987777..77777777777777776 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.6e-06    0.0064      14      93 ..      38     116 ..      34     146 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.6e-06
                 EEEEESTTSSH.HHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHHHHHTCHHHHHHHST CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGK.StLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvrenesdeeiekalsklg 93 
                 + i G++GaGK + +l ll  l+ p +++i++d + +++++ ++l+ +i     + ++ p      n++++ i+++l+++ 
  KKY21408.1  38 LLIYGPSGAGKkTRILTLLRALYGPGAEKIKIDARVFQTTSNRKLEFNIVSSVYHMEITPSD--VGNYDRVVIQELLKEVA 116
                 6799******73669999999*************9999966666655555444444444443..23344444555555544 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.1e-05      0.02      47     157 ..      37     153 ..       3     166 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-05
       Rad17  47 iLLisGPsGCgkstvvkvLskel.giklre.wlnpvslkepdnqksdfkgltekesrf..lsqiesfkeleLkdakylklqklGdd..lrtdkklilve 139
                  LLi GPsG gk t +  L + l g+  ++  +++  ++ ++n+k +f  +  +       s +  +  + +++    + q +  d  +r   k+++++
  KKY21408.1  37 HLLIYGPSGAGKKTRILTLLRALyGPGAEKiKIDARVFQTTSNRKLEFNIVSSVYHMEitPSDVGNYDRVVIQELLKEVAQTQQVDlsARQRFKIVVIN 135
                 59**********99887776665266554425789999******9999866655543233677777777766666555555444441156666777777 PP

       Rad17 140 dlPnkfyrdsdalrevir 157
                 +  +       alr  + 
  KKY21408.1 136 EADSLTRDAQAALRRTME 153
                 765544444456665555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   1.9e-05     0.034       5      92 ..      38     155 ..      35     160 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.9e-05
      AAA_24   5 iliyGpsgiGKTtlakel.....gpkplfidtekGlksldadkfpdie............................swedfldevvel....aaelady 66 
                 +liyGpsg+GK t +++l     gp +  i +++       + f++ +                             ++++l+ev++       + +++
  KKY21408.1  38 LLIYGPSGAGKKTRILTLlralyGPGAEKIKIDA-------RVFQTTSnrklefnivssvyhmeitpsdvgnydrvVIQELLKEVAQTqqvdLSARQRF 129
                 79***************95555533333334444.......223222233333446667778888888888899998999999999989999788888* PP

      AAA_24  67 ktlviDtideleelclaevirqneka 92 
                 k++vi  +d l + + a ++r  ek 
  KKY21408.1 130 KIVVINEADSLTRDAQAALRRTMEKY 155
                 ****************9998887775 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.4e-05      0.06      20     115 ..      36     135 ..      29     224 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.4e-05
      AAA_23  20 gltlItGpNGaGKTTildAiklaLygetprlsrks.....grgfeksdveiesegkvkay.veltfenkdgrytrsiererelskkkgkttkkaklell 112
                 +  lI+Gp GaGK T +  +  aLyg  p+ ++ +      +   +++  +e++   + y +e+t ++ ++ y+r + +e  +   ++++++ ++++ +
  KKY21408.1  36 PHLLIYGPSGAGKKTRILTLLRALYG--PGAEKIKidarvFQTTSNRK--LEFNIVSSVYhMEITPSDVGN-YDRVVIQELLKEVAQTQQVDLSARQRF 129
                 5679*************9********..45555544443322222333..444445666678888777766.345666666666666666666655555 PP

      AAA_23 113 ei...d 115
                 +i   +
  KKY21408.1 130 KIvviN 135
                 554442 PP

>> Ribonuclease_T2  Ribonuclease T2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00021      0.38     107     154 ..      74     122 ..      63     148 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
                      HHHHHHHHTT--HHHHHHHTT--S.SS-EEEHHHHHHHHHHHHSS--.E CS
  Ribonuclease_T2 107 FqkalelrkkldlkkvLakagIvPsktksyslseikdalkkaigvkp.k 154
                      Fq++ + + ++++ +   + +I+Ps+  +y+   i+++lk++ ++++ +
       KKY21408.1  74 FQTTSNRKLEFNIVSSVYHMEITPSDVGNYDRVVIQELLKEVAQTQQvD 122
                      99***************************************99776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 2496.12
//
Query:       KKY21409.1  [L=442]
Description: putative calcium uniporter mitochondrial [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-14   53.2   1.9    3.7e-14   53.2   1.9    3.0  2  MCU       Mitochondrial calcium uniporter
     0.0016   18.0   0.3     0.0027   17.3   0.3    1.3  1  DUF1281   Protein of unknown function (DUF1281)


Domain annotation for each model (and alignments):
>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   1.9   4.1e-18   3.7e-14      59     149 ..     280     371 ..     270     382 .. 0.91
   2 ?   -2.5   0.7      0.54   4.8e+03      58      85 ..     407     433 ..     387     438 .. 0.45

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 4.1e-18
                 HHHHHHHHHHH-SHHHHHHHHTCCCGGGCHHHHGGGHHHHHHHHTHHHHHHHT.TTS-S----HHHHHHHHHHHHHHHTTTHHHHGGCTTTC CS
         MCU  59 leekleelreelepleekkeeidekAerrtrrllwagLallavqlgilarLTw.weysWDvmEPvtYfvtygtamafyaYflltkqeysyed 149
                 l+ +l++   e+  l ++k e+d+ A++  +rl+ ag+++++  + i+ rLT+  +y WD mEPvtY v+++t++ +    +  +q+  y++
  KKY21409.1 280 LRMRLRKTALEIMDLAKVKYECDMLAHKGGQRLALAGFGIMVGWWYIVYRLTFeTDYGWDTMEPVTYLVGLSTLISALNLTVSRRQQKLYQQ 371
                 56677778889999***************************************779*******************99999999999888875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.54
                 HHHHHHHHHHHH-SHHHHHHHHTCCCGG CS
         MCU  58 eleekleelreelepleekkeeidekAe 85 
                 +++ek +++++ l+  ++ k++ d+k++
  KKY21409.1 407 KADEKHATVTKALRDERK-KTQSDKKSK 433
                 333333333333333222.333333333 PP

>> DUF1281  Protein of unknown function (DUF1281)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.3     3e-07    0.0027      55     126 ..     349     421 ..     305     432 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3e-07
     DUF1281  55 WlelLkedveLteeaieeierlyeqsglaavkWeslte...akrealaallerksaDWlglvtledesdvetlWe 126
                  l+ L ++ +Lt +  ++ ++ly+q g +  +W++l e   a r+ ++a+ ++  +DW   ++ ++++ +++l +
  KKY21409.1 349 GLSTLISALNLTVS--RRQQKLYQQRGFDVARWDQLIEegnALRKEIKAVAAEYDVDWDEKADEKHATVTKALRD 421
                 55556666566555..55679***************863336799**************9999666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1201  (0.0669864); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 2787.09
//
Query:       KKY21410.1  [L=340]
Description: putative alcohol zinc [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-35  121.3   2.6    3.9e-35  120.0   1.4    2.0  2  ADH_N          Alcohol dehydrogenase GroES-like domain
    2.5e-16   59.8   0.0    4.1e-16   59.1   0.0    1.4  1  ADH_zinc_N     Zinc-binding dehydrogenase
    2.2e-13   50.2   0.0    3.3e-13   49.6   0.0    1.2  1  Glu_dehyd_C    Glucose dehydrogenase C-terminus
    1.9e-07   32.2   0.0    3.1e-07   31.5   0.0    1.3  1  ADH_zinc_N_2   Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.019   14.2   0.3      0.033   13.5   0.3    1.2  1  FAD_binding_3  FAD binding domain
      0.096   12.8   0.5       0.32   11.1   0.2    2.1  2  NADH_4Fe-4S    NADH-ubiquinone oxidoreductase-F iron-sulfur b
       0.15   12.7   0.0        1.3    9.7   0.0    2.4  2  NAD_binding_3  Homoserine dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.0   1.4   1.5e-38   3.9e-35       2     109 .]      25     130 ..      24     130 .. 0.97
   2 ?   -0.4   0.0      0.42   1.1e+03      34      64 ..     232     262 ..     219     268 .. 0.79

  Alignments for each domain:
  == domain 1  score: 120.0 bits;  conditional E-value: 1.5e-38
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTSS-SSSBSEEE CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvsldGgfaeyvv 100
                 ++vl+kvka+g+Cg+Dlhi +g  e+ +k+pli+GHE+vG+v+++gp+ k++++GdrVv++    cgeC +C++gee lCe+ + +gv++dGgfaey+ 
  KKY21410.1  25 TDVLVKVKACGVCGTDLHIHEG--EFLAKFPLIPGHETVGVVAALGPKAKGFEIGDRVVADNSELCGECFYCRRGEELLCEHFEAHGVTMDGGFAEYCA 121
                 68*******************9..7************************************************************************** PP

                 ECGGGEEEE CS
       ADH_N 101 vpekklvkl 109
                  p+k ++k+
  KKY21410.1 122 YPAKRVFKI 130
                 ***999885 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.42
                 E---EEEEEEEEESTT-CS--TT-EEEE-SE CS
       ADH_N  34 ilGHEivGeveevgpevkklkvGdrVvvepl 64 
                  +  E++G v+ ++++++ ++ G + vv+ +
  KKY21410.1 232 DIVVEATGSVKILEDSINYVRRGGKLVVYGV 262
                 5556999**********99999998888755 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   1.6e-19   4.1e-16       2     127 ..     170     299 ..     169     302 .. 0.84

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 1.6e-19
                 HHHHHHHHHH.HTT-EEEEEESSHHHHHHHHHTT.ESEEEETTTCHHHHHHHHHT..TTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE CS
  ADH_zinc_N   2 vGlaavqlAk.alGaeviavdsseeklelakklG.adevinykeadlverikelt..ggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee 96 
                  Gl + q+++   G++v+++++   k +lak+l  ad+++  ++++++++ +++   ++ g+d+v+e++Gs + le++++++++gG+lvv+G+  +++ 
  KKY21410.1 170 TGLVLTQMLRqNGGCHVVVAAPEGLKMDLAKSLDaADVYVPLSRTNPQAQFEKIKaeNPYGFDIVVEATGSVKILEDSINYVRRGGKLVVYGVYANKDR 268
                 6999******78888*******************66666666666888777777754699********************************9555555 PP

                 ..EEHHHHHHTT-EEEEE-SSCHHHHHHHHHHH CS
  ADH_zinc_N  97 ..fdlrnlllkeksilGsllgslreefkealdl 127
                    ++++++  e++ilGs+  +   +f++a+d 
  KKY21410.1 269 vsWPPSKIFGDEITILGSFSET--YKFPAAIDY 299
                 3477777************988..778877765 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   1.3e-16   3.3e-13       5     212 .]     139     339 ..     136     339 .. 0.80

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 1.3e-16
  Glu_dehyd_C   5 vLvEPisiveKaielaeasrsafewepesalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGa..tYvd.sretpvdeipease 99 
                   L+EP s ++ ++++++          +s+l+ GaG+ GL+ + +l++ + g    +v+ +   +++++dl ++l+a  +Yv  sr++p  ++ +++ 
   KKY21410.1 139 TLLEPASCAAHGLDKIAPK------MGSSVLMFGAGPTGLVLTQMLRQ-NGGC---HVVVA-APEGLKMDLAKSLDAadVYVPlSRTNPQAQFEKIKA 225
                  6889999999999987654......34699************9***95.4444...45554.4679**********9445885355555555544433 PP

  Glu_dehyd_C 100 e....mdlvvEaTGsakhafeaiealapnGvaaLlGvpeds.evevdggelhrelvleNkalvGsvNanrrhfeaavdtLaalpeslldelvtkvvdl 192
                  e    +d+vvEaTGs k + ++i+ ++  G  +  Gv++++ +v+   +++  +       ++Gs  +++ +f aa+d L++ + + ++ +v k  +l
   KKY21410.1 226 EnpygFDIVVEATGSVKILEDSINYVRRGGKLVVYGVYANKdRVSWPPSKIFGD----EITILGSF-SETYKFPAAIDYLDSGKVK-VKGIVNKTFTL 317
                  222339********************************9885788888877766....67899*97.88999********998766.699******** PP

  Glu_dehyd_C 193 deleeAfe..dddetiKtvvel 212
                  d+++e  e  +++  iK+++ +
   KKY21410.1 318 DQWKECLEsmKNKSAIKAAITF 339
                  *******85567789**99976 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   1.2e-10   3.1e-07      11     127 ..     217     332 ..     202     333 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 1.2e-10
                   STTHH..HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHHHH..-- CS
  ADH_zinc_N_2  11 tedfe..aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaalieeGk..lr 103
                   + +fe  +a ++ g+D+v++++g+ ++le+s+++++ gG+lv++g    ++++++p++k  g  +++   fs +++   + + +  +++++Gk  ++
    KKY21410.1 217 QAQFEkiKAENPYGFDIVVEATGSVKILEDSINYVRRGGKLVVYGVYANKDRVSWPPSKIFGDEITILGSFS-ETY---K-FPAAIDYLDSGKvkVK 308
                   677778888889***********************777****999656899999999999999999999995.544...5.999*********4445 PP

                   --EEEEEEGGGHHHHHHHHHSS-- CS
  ADH_zinc_N_2 104 pvvdrvfpleeaaeAhrylesgra 127
                     v+++f+l++ +e ++ +++++a
    KKY21410.1 309 GIVNKTFTLDQWKECLESMKNKSA 332
                   68************9999988765 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   1.3e-05     0.033       3      30 ..     161     188 ..     160     195 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.3e-05
                    EEEEE--SHHHHHHHHHHHHTTHHEEEE CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlv 30 
                    +Vl  GaGp+Gl+l+++L++ G  +v+v
     KKY21410.1 161 SVLMFGAGPTGLVLTQMLRQNGGCHVVV 188
                    69999*****************988887 PP

>> NADH_4Fe-4S  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00012      0.32      12      34 ..      85     107 ..      80     155 .. 0.78
   2 ?   -3.5   0.0       4.4   1.1e+04      44      59 ..     316     331 ..     307     332 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
                  HH--S--HHHHIIIIHHHHHHHH CS
  NADH_4Fe-4S  12 aesCGkCtpCreGtkrlleller 34 
                  +e CG+C+ Cr G + l e +e 
   KKY21410.1  85 SELCGECFYCRRGEELLCEHFEA 107
                  578**********9999887765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.4
                  HHHHHHHHHHHHSS-- CS
  NADH_4Fe-4S  44 dldlleelaetikgts 59 
                  +ld+ +e  e++k++s
   KKY21410.1 316 TLDQWKECLESMKNKS 331
                  4777888888888776 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0005       1.3      41      99 ..     213     270 ..     170     273 .. 0.63
   2 ?   -1.3   0.0       1.3   3.3e+03      20      54 ..     303     336 ..     296     339 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0005
                    HHT--CB---HHHHHHHH...S-EEEEE-S--HHHHTTHHHHHHTTEEEE-S--CGGG-HHH CS
  NAD_binding_3  41 llasealtldlddliahl...dpdvvVEcasseavaelvlkaLkagkdvvtankgaladeal 99 
                     ++++a+ +++++    +     d+vVE+++s  + e   + +++g  +v+  + a+ d + 
     KKY21410.1 213 RTNPQAQFEKIKA----EnpyGFDIVVEATGSVKILEDSINYVRRGGKLVVYGVYANKDRVS 270
                    3333333333333....134569******888888888889999999999999999988765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
                    SEEEEEEEEESSEEE-TTHHHHHT--CB---HHHH CS
  NAD_binding_3  20 ielelvavadrdsllskdrkallasealtldlddl 54 
                     ++++++++++   + +++k+ l+s +  + +++ 
     KKY21410.1 303 GKVKVKGIVNKT-FTLDQWKECLESMKNKSAIKAA 336
                    478999999999.8888888888887777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:00.58
# Mc/sec: 1769.43
//
Query:       KKY21411.1  [L=962]
Description: putative ubiquitin-protein ligase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-79  266.8   0.0    3.7e-79  266.4   0.0    1.1  1  HECT      HECT-domain (ubiquitin-transferase)
  ------ inclusion threshold ------
       0.13   12.0   0.2       0.29   10.8   0.2    1.5  1  PTCRA     Pre-T-cell antigen receptor


Domain annotation for each model (and alignments):
>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.4   0.0   4.1e-83   3.7e-79       2     306 ..     644     961 ..     643     962 .] 0.94

  Alignments for each domain:
  == domain 1  score: 266.4 bits;  conditional E-value: 4.1e-83
                 HHHHHHT-GGGSSEEESSTTSSSEEE-TTHHHHS....HHHHHHHHHHHHHTT--BSS-B-HHHHHHHTT...............-.---TCHHHHH-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxx RF
        HECT   2 llskelldpklglfeeesedsgtlypkpssseeellklfeflGkvlGkaiyeeilldlpfsraflkfllg...............eekitledleeidp 85 
                 ll++e++dp++glf++ +eds+ +y++p+  e++  ++f ++G++lG+aiy++ +ld+ f+++ +k+ll                +   tledl+ei p
  KKY21411.1 644 LLTREIFDPQHGLFTY-DEDSNFCYFNPYCFESS--EQFFLVGVLLGLAIYNSAILDVAFPPFAFKKLLAsapssgtattaapriTPVYTLEDLAEIRP 739
                 799***********75.99**********86644..58*******************************************9999656799******** PP

                 HHHHHHHHHH..HS-GGG...GT-BSEEEEE.TTEEEEEESSTTGGGSB--TTTHHHHHHHHHHHHHTGGGHHHHHHHHHHHHTTS-HHHHTTS-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT  86 elakslkellslesnteevedlaLtFtipen.agasatieLipnGanipVtnenkkeYiklyvnyllkksvekqleaflkGfsevipskalklfdaeel 183
                 +la+ l+ ll++  + +  e+++L+F+ + + +g+  ++ L ++G++ pVtn+n++eY++lyv+y l++ v++q+e f++Gf +v+  +al+lf++ee+
  KKY21411.1 740 ALARGLRLLLDY--DGDVEEAFSLDFVAQIDrYGEPIQVPLSSGGEKKPVTNSNRREYVELYVRYVLDTAVARQYEPFKRGFFTVCGGNALSLFRPEEI 836
                 **********66..5555789******99999******************************************************************* PP

                 HHHHBCSSS.--HHHHHHTEEEETT...--TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSS--TTCGGG-B--EEEEE-S..-TTS--EEEGGGTEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT 184 ellisGedelidvedlrrnteykgg...ynaesetiewlweilkefspeekrlfLqFvTgssrlPlgGfaelhpkftierkskedetrLPtahTCfnlL 279
                 elli G++e +d++ l+++++y++    y +e+++++w+we+++e sp+++r+ L F+Tgs+r+P+ G ++l  k+t   +s ed++rLP+a TCfn+L
  KKY21411.1 837 ELLIRGSEEPLDISALKAVATYENWhckYPEEEPQVQWFWEAFSEASPKDQRKVLSFITGSDRIPAMGATNLVLKITCLGNS-EDTERLPSARTCFNML 934
                 **********************66444599******************************************5555555544.8999************ PP

                 EE---SSHHHHHHHHHHHHHHHH--XX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT 280 klpdYsskeilkekLltAieetegFel 306
                  l++Y+++e+l ekL +A+ e+egF+l
  KKY21411.1 935 SLYRYQTREKLMEKLWLAVGESEGFGL 961
                 *************************98 PP

>> PTCRA  Pre-T-cell antigen receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   3.3e-05      0.29      41     114 ..     174     247 ..     166     258 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.3e-05
       PTCRA  41 piwfsaGnGsaldaftyGpspaadGtwtslaqlslpseelaaweplvchtgpgageksrstqplqlsgeasaar 114
                   w+++G      +     sp+ dG+  sl    ++  ela w  l+ h+g +++++ +  +p +  +++  ++
  KKY21411.1 174 GTWWTGGRAERRPSQHRDRSPEPDGSTVSLKTPRINWAELAEWYHLIIHAGDDWKDRWNRMRPSKTETQEDYEQ 247
                 56777777777777777789*************************************99999998877666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (962 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.50
# Mc/sec: 5833.69
//
Query:       KKY21412.1  [L=203]
Description: putative 60s ribosomal protein l15 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-90  301.2   9.1    3.3e-90  300.9   9.1    1.0  1  Ribosomal_L15e  Ribosomal L15


Domain annotation for each model (and alignments):
>> Ribosomal_L15e  Ribosomal L15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.9   9.1   1.9e-94   3.3e-90       1     188 [.       2     188 ..       2     190 .. 0.98

  Alignments for each domain:
  == domain 1  score: 300.9 bits;  conditional E-value: 1.9e-94
                     -SHHHHHHHTTSTTSHHHHHHHHHHHHHHTTS-SEEEESS-SSHHHHHHHT--SSTTEEEEEEEEE-SS---..---SS---GGGG-SSS---SS CS
  Ribosomal_L15e   1 gaykylrelwkkkqsdvlrellrerlweyrqepavvrverptrldrArrLGYkakqGivvvrvrvrrGgrkkkvskgktgrkpkrqgvnklkpak 95 
                     ga ky++el+kkkqsd+lr+llr+r+we rq+++++r++rp+r+d+ArrLGYkakqG+v++rvrvrrGgrk++ +kg+t++kp++qg+n+lk ++
      KKY21412.1   2 GALKYVEELQKKKQSDILRFLLRVRCWELRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPSPKGATYGKPTNQGINQLKYQR 96 
                     689******************************************************************************************** PP

                     -HHHHHHHHHHHHSTTSEEEEEEEEEEESSEEEEEEEEE-TTSHHHHT-TTTGGGGSGGGTTGGGGT-SHHHHHHTT-S-SS.TT-TTTSS-T CS
  Ribosomal_L15e  96 slqaiaeervgrklpnlrvLnSYwvgeDgtykyyEvilvDpshkairndkkinwickkvhkhRelrGltsagkksRGlrkkglkgaekirgsr 188
                     sl+a+aeervgr++ nlrvLnSYw+++D+tykyyEvilvDp+hkair+d++inwi+++vhkhRe+rGlt++gkksRGl +kg+k+++++ g r
      KKY21412.1  97 SLRATAEERVGRRCANLRVLNSYWINQDSTYKYYEVILVDPQHKAIRKDPRINWIVNPVHKHREARGLTATGKKSRGL-GKGHKFNKTTAGRR 188
                     ******************************************************************************.********998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.53
# Mc/sec: 1142.78
//
Query:       KKY21413.1  [L=752]
Description: putative anthranilate synthase component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-89  299.9   0.0      1e-88  297.3   0.0    2.1  2  Chorismate_bind  chorismate binding enzyme
      2e-28   99.4   0.1    8.6e-25   87.6   0.0    3.7  4  Anth_synt_I_N    Anthranilate synthase component I, N termina
     0.0063   16.6   0.1       0.02   14.9   0.0    1.8  2  Pox_A12          Poxvirus A12 protein
  ------ inclusion threshold ------
      0.043   14.1   0.2      0.092   13.0   0.2    1.5  1  CDT1             DNA replication factor CDT1 like
       0.12   12.8   0.0        4.5    7.8   0.0    2.4  2  Phage_holin_3_1  Phage holin family (Lysis protein S)


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.3   0.0   2.8e-92     1e-88       2     258 .]     229     493 ..     228     493 .. 0.98
   2 ?   -0.1   0.0      0.15   5.5e+02      18      92 ..     646     718 ..     636     739 .. 0.64

  Alignments for each domain:
  == domain 1  score: 297.3 bits;  conditional E-value: 2.8e-92
                      HCHHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEEEETTEEEEEEESSEEEEEETTSEEEEECEEEEEEHS CS
  Chorismate_bind   2 redYaeavekvkeeiragdlykvvlsrrlkaeleaavdplalyralrarnpapysflleledsellgaSPElllkveggrrietepiaGTrarg 95 
                      +  Y+++v+++k++i  gd+ ++v+s+rl  +  ++++p+++yr+lr+ np+py f++++ed++l+gaSPEll+k e+g ri t+piaGT +rg
       KKY21413.1 229 QTGYENHVKTLKKHITVGDIIQAVPSQRLARP--TSLHPFNIYRHLRTVNPSPYLFYVDCEDFQLIGASPELLVKEEAG-RIITHPIAGTVKRG 319
                      678*****************************..99*****************************************77.************** PP

                      SSHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--HHHHHHHCSS-CCCSEESHHH CS
  Chorismate_bind  96 ktpeedealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgavtGaPkkr 189
                      +tpeede l++el+++ K+raEh+m+vdl+rnd+++v+ p + +v++l+ v+++s+v+hlvs+++g l++d + +d+++++fP+g+v+GaPk +
       KKY21413.1 320 TTPEEDEMLADELRNSLKDRAEHVMLVDLARNDINRVCDPMTTTVDRLMVVQKFSHVQHLVSQVSGVLRSDQTRWDAFRSIFPAGTVSGAPKVK 413
                      ********************************************************************************************** PP

                      HHHHHHHHSSS--TTTTSEEEEEETTS-...........EEEEEE-SEEEEETTEEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 190 ameiidelEearRgvYaGavgyldadge...........aelavvIRtavvkdkelrlgaGaGIvadSdpeaEyeEtlaK 258
                      ame+i+elE ++RgvYaGavgy+++d+            +++++++Rt+++kd+ ++l+aG+GIv dSdp +Ey Et +K
       KKY21413.1 414 AMELIAELEGEKRGVYAGAVGYFGFDSVsadgskeiegaMDTCIALRTMLAKDGVAYLQAGGGIVFDSDPYDEYIETINK 493
                      ************************998778888999999**************************************988 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.15
                      TTS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEEEETT.......EEEEEEESSEEEEEETTSEEEEECEEEEE CS
  Chorismate_bind  18 agdlykvvlsrrlkaeleaavdplalyralrarnpapysflleled.......sellgaSPElllkveggrrietepiaGTr 92 
                      a++++ v+ls +++ e +     ++++++ ++ +++    ll +++       ++l ++S E l +v+       +  aG r
       KKY21413.1 646 AKSFETVNLSIKFRQERD---RLVNVLKTGKQVTQNEILSLLAHKRkcstwsaYDLASVSEEDLADVK------AMLHAGAR 718
                      566788999999999933...35899999999999999999977654444444445555555555444......23445554 PP

>> Anth_synt_I_N  Anthranilate synthase component I, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.0   2.4e-28   8.6e-25       1     140 [.      40     171 ..      40     173 .. 0.90
   2 ?   -2.0   0.0         1   3.7e+03      33      56 ..     289     316 ..     263     344 .. 0.66
   3 !    7.0   0.0    0.0018       6.5      90     104 ..     428     442 ..     376     458 .. 0.83
   4 ?   -2.5   0.0       1.5   5.5e+03      17      41 ..     638     662 ..     625     725 .. 0.61

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 2.4e-28
  Anth_synt_I_N   1 ddltplsvylklaeee.hkflLeSaeneggegrySfigldpflelkskngevevegpegeeleeeepldalrellerfrsaedseptelpfvgGlv 95 
                    d ltp  +yl++++ +  +fl+eSae+ g  grySf+g++p+ +lks  g          +   e+pl al+  l++ + a+++  + +p+ gG++
     KKY21413.1  40 DLLTPSGAYLRVSKGSkLSFLFESAETTGTIGRYSFVGANPRKVLKSGPG----------HGPAEDPLPALQTELSSSKVATVPGLQLPPLAGGAI 125
                    6799*********99999********88888**********555554444..........345566*************88888899********* PP

  Anth_synt_I_N  96 GylgYDlvreie.klpksakddlnlpdarlilydtlivfDhkerrl 140
                    Gy+gYD+vr++e k  +  kd l++p+  ++l+d++i+fDh ++++
     KKY21413.1 126 GYVGYDCVRYFEpKTARDMKDVLKVPESFFMLFDNIIAFDHFYQQI 171
                    ******************************************9997 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1
  Anth_synt_I_N  33 ySfigldpflelkskngeveveg....p 56 
                    + +ig++p l +k + g++ ++      
     KKY21413.1 289 FQLIGASPELLVKEEAGRIITHPiagtV 316
                    7789999988888888777777655542 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0018
  Anth_synt_I_N  90 fvgGlvGylgYDlvr 104
                    ++ G+vGy+g+D v 
     KKY21413.1 428 VYAGAVGYFGFDSVS 442
                    789*********964 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.5
  Anth_synt_I_N  17 hkflLeSaeneggegrySfigldpf 41 
                    +k+l eS  ++ +  + S+   +++
     KKY21413.1 638 YKVLVESTAKSFETVNLSIKFRQER 662
                    6667777665555555555444442 PP

>> Pox_A12  Poxvirus A12 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.6e-06      0.02      11      32 ..     483     504 ..     479     540 .. 0.88
   2 ?   -2.6   0.0       1.4   4.9e+03      74     123 ..     687     736 ..     660     741 .. 0.48

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.6e-06
     Pox_A12  11 syddyietinkltpqlktilah 32 
                  yd+yietinkl  +++ti+a 
  KKY21413.1 483 PYDEYIETINKLGANIRTIIAA 504
                 5******************984 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.4
     Pox_A12  74 kkkssssskstrksskkssGapvrkktvfssvnedtqivqavtnaGkivy 123
                 k+k+s  s     s ++   a v+     ++ + ++   qa+   G + y
  KKY21413.1 687 KRKCSTWSAYDLASVSEEDLADVKAMLHAGARKTQNEDQQAMESWGDVAY 736
                 44444444444444444444443333333333333334455555555555 PP

>> CDT1  DNA replication factor CDT1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   2.6e-05     0.092      96     165 ..     545     625 ..     500     633 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.6e-05
        CDT1  96 l...........kvsaseaetdkrkklsaerlleRrkkFrrkLleiVkehHek.FLeslnppvevpdlekltrwHpeFdldt 165
                 +           kv+++e e +++ k+  + l++R ++F ++ l+i +++ ++ FL++l+    + +++  +  Hp+F  ++
  KKY21413.1 545 QlkdpwpkkfatKVNEDEKELKNKLKMAIKELEQRCETFDETFLRILRDTVTQpFLAELDVT-AFTRDCAAKESHPQFTQSS 625
                 1456666677777888999999*************************9886544******66.57777**********7655 PP

>> Phage_holin_3_1  Phage holin family (Lysis protein S)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0012       4.5      71      91 ..     116     136 ..     102     142 .. 0.85
   2 ?    2.2   0.0      0.07   2.5e+02      70      89 ..     423     442 ..     398     448 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0012
  Phage_holin_3_1  71 slavviggliGflGvekirel 91 
                      +l  ++gg+iG++G + +r +
       KKY21413.1 116 QLPPLAGGAIGYVGYDCVRYF 136
                      78899***********99965 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.07
  Phage_holin_3_1  70 aslavviggliGflGvekir 89 
                       +   v +g++G++G + ++
       KKY21413.1 423 GEKRGVYAGAVGYFGFDSVS 442
                      55567889*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       932  (0.0519828); expected 358.6 (0.02)
Passed bias filter:                      623  (0.0347482); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.46
# Mc/sec: 4963.34
//
Query:       KKY21414.1  [L=325]
Description: hypothetical protein UCRPC4_g03677 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-05   23.4   4.1      0.094   12.8   0.6    2.7  2  bZIP_1          bZIP transcription factor
     0.0012   18.8   7.1     0.0019   18.2   7.1    1.2  1  CEP63           Centrosomal protein of 63 kDa
     0.0071   15.7   4.4      0.013   14.8   4.4    1.4  1  DUF3450         Protein of unknown function (DUF3450)
     0.0079   16.2   9.0      0.016   15.2   9.0    1.5  1  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
  ------ inclusion threshold ------
       0.01   14.5   2.7      0.012   14.3   2.7    1.1  1  AAA_13          AAA domain
      0.011   15.1  13.8      0.025   14.0  13.8    1.6  1  DUF3552         Domain of unknown function (DUF3552)
      0.015   13.5   4.7      0.019   13.2   4.7    1.1  1  FPP             Filament-like plant protein, long coiled-coil
       0.03   12.1   8.5      0.039   11.8   8.5    1.0  1  Myosin_tail_1   Myosin tail
      0.032   13.6   7.1      0.023   14.1   5.1    1.6  1  GAS             Growth-arrest specific micro-tubule binding
      0.067   12.2   1.2      0.087   11.9   1.2    1.1  1  Pox_F11         Poxvirus F11 protein
      0.082   13.1  11.6       0.23   11.7   5.8    2.1  2  Jnk-SapK_ap_N   JNK_SAPK-associated protein-1
       0.11   12.0   5.7       0.15   11.6   5.7    1.2  1  HAUS-augmin3    HAUS augmin-like complex subunit 3
       0.13   12.2   7.7          6    6.9   7.7    2.6  1  Prefoldin_2     Prefoldin subunit
       0.15   10.5   1.2       0.21   10.1   1.2    1.1  1  Herpes_UL6      Herpesvirus UL6 like
       0.16   10.9   5.8       0.26   10.2   5.8    1.2  1  IFT57           Intra-flagellar transport protein 57
       0.16   12.0   4.9       0.29   11.1   4.9    1.3  1  Sipho_Gp157     Siphovirus Gp157
       0.21   10.4   2.8       0.29    9.9   2.8    1.2  1  Fmp27_WPPW      RNA pol II promoter Fmp27 protein domain
       0.27   10.1   7.6       0.43    9.4   7.6    1.2  1  Spc7            Spc7 kinetochore protein
       0.29   11.2  11.7       0.98    9.5  11.7    1.9  1  ADIP            Afadin- and alpha -actinin-Binding
        0.3   11.6  10.9       0.88   10.1  10.9    1.8  1  APG6_N          Apg6 coiled-coil region
        0.4   11.1   9.2       0.95    9.9   4.6    2.4  2  DUF4200         Domain of unknown function (DUF4200)
       0.45   10.6  12.6      0.031   14.3   4.3    2.5  2  TPR_MLP1_2      TPR/MLP1/MLP2-like protein
       0.46   11.2  10.5       0.13   13.0   7.2    1.8  1  DUF4472         Domain of unknown function (DUF4472)
       0.46   10.6   6.5       0.18   11.9   0.6    2.8  2  bZIP_2          Basic region leucine zipper
       0.79    9.5   7.6       0.54   10.1   5.5    1.8  2  DUF724          Protein of unknown function (DUF724)
        0.8    9.3   5.6        3.3    7.3   5.7    1.8  1  DUF4795         Domain of unknown function (DUF4795)
       0.87    7.4   3.4        1.1    7.1   3.4    1.1  1  V_ATPase_I      V-type ATPase 116kDa subunit family
          1    7.8   5.4        1.6    7.2   5.4    1.3  1  Macoilin        Macoilin family
        1.4    9.5   5.6       0.21   12.1   0.7    2.2  1  UPF0449         Uncharacterised protein family UPF0449
        1.5    8.9   8.0        4.1    7.5   8.0    1.7  1  BRE1            BRE1 E3 ubiquitin ligase
        2.4    8.6  10.5         20    5.6   0.2    3.2  3  TSC22           TSC-22/dip/bun family
        3.2    7.8   6.2         13    5.9   4.4    2.2  2  MCC-bdg_PDZ     PDZ domain of MCC-2 bdg protein for Usher syn
        5.6    7.6   8.3        3.8    8.1   4.2    2.4  2  Syntaxin-6_N    Syntaxin 6, N-terminal
        6.1    7.1  10.8      3e+02    1.7  10.8    2.4  1  Spc24           Spc24 subunit of Ndc80
        6.3    6.7  13.7       0.91    9.3   1.2    3.3  3  DivIC           Septum formation initiator
        7.1    7.3   7.6         61    4.3   7.6    2.3  2  YabA            Initiation control protein YabA


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.6   0.00019     0.094      24      60 ..      14      50 ..      12      54 .. 0.93
   2 !   11.5   0.4    0.0005      0.25      27      62 ..      52      87 ..      49      89 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00019
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 24 KqaeieeLerrvkaLekeNksLkseleelkkevekLk 60
                K aeie+L ++   L++ N++L s  e+l++++ +L+
  KKY21414.1 14 KAAEIEQLNKKITDLDSINSELTSAPENLQNQIIELE 50
                889****************************998876 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.0005
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 27 eieeLerrvkaLekeNksLkseleelkkevekLksk 62
                + e Le+rvk L + N++L   l + + + + L+s 
  KKY21414.1 52 REEILETRVKDLRTRNSTLTAHLHQVERQESRLRSS 87
                5678***********************999999986 PP

>> CEP63  Centrosomal protein of 63 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   7.1   3.8e-06    0.0019     116     254 ..      11     142 ..       4     151 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.8e-06
       CEP63 116 keedrvelsrlnskleefrqkslewekqrlqyqkqvasleaqrkaLaekleliqsaaykvqlekrkqkLesveldsqseiqrLrskleraqdtleaqel 214
                 +e +  e+++ln+k+ +  +   e +      q+q+  lea  + L  +++ +++       +     L +ve     +  rLrs l++a++t+  +e+
  KKY21414.1  11 NEGKAAEIEQLNKKITDLDSINSELTSAPENLQNQIIELEAREEILETRVKDLRT-----RNSTLTAHLHQVER----QESRLRSSLQEAERTNLEDEV 100
                 5667789*******************************************99999.....44455555554443....3469***************** PP

       CEP63 215 elerLrllveelgksk.rvlleekqeleee.lresekqlqvl 254
                 +le ++ +v  l +     ++e ++e + +  r + ++ ++l
  KKY21414.1 101 ALEAMSAAVGGLEGWMdSFISEAQREASTAaTRPKTRNEKML 142
                 **********99986625566555555544244444555544 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   4.4   2.6e-05     0.013      15     102 ..      15     102 ..       3     112 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.6e-05
     DUF3450  15 aatldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelvpll 102
                 aa+++q++k+ +   ++ ++  +  ++l+++  el+a+ + l++++++l+  n+ l++ + ++e++ ++l+ +++e+e+++ e +  l
  KKY21414.1  15 AAEIEQLNKKITDLDSINSELTSAPENLQNQIIELEAREEILETRVKDLRTRNSTLTAHLHQVERQESRLRSSLQEAERTNLEDEVAL 102
                 4445555555555555555555555555555555555555555555555555555555555555555555555555555555555555 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   9.0   3.2e-05     0.016      45     127 ..       9      91 ..       5     104 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.2e-05
  CENP-F_leu_zip  45 leaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqekvqmkeeskaa 127
                      + E + ae+e+l+++i  l +  +el++  ++l+++  eLe   +    rv++L ++ns+l+  l++ E ++ +++ + ++a
      KKY21414.1   9 SQNEGKAAEIEQLNKKITDLDSINSELTSAPENLQNQIIELEAREEILETRVKDLRTRNSTLTAHLHQVERQESRLRSSLQEA 91 
                     6889999*****************************************************************98888776654 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   2.7   2.5e-05     0.012      84     181 ..       4     102 ..       1     142 [. 0.78

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.5e-05
      AAA_13  84 vftLGeesiekqekieklkkeikkleek...leaaeaqlqkaekekkklekeledeawkkivkkknsalsealkglkyeekfkerllkelkkknrkaae 179
                 v +LG+++  k+++ie+l+k+i +l +    l++a ++lq++  e+++ e+ le+++ k + +  ns+l+  l++++++e +    l+e++++n ++ +
  KKY21414.1   4 VGYLGSQNEGKAAEIEQLNKKITDLDSInseLTSAPENLQNQIIELEAREEILETRV-KDL-RTRNSTLTAHLHQVERQESRLRSSLQEAERTNLEDEV 100
                 779****************99877655411166666666666667777777666666.556.789*****99999*99999999999999998666555 PP

      AAA_13 180 ll 181
                  l
  KKY21414.1 101 AL 102
                 44 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0  13.8   5.1e-05     0.025      67     144 ..      29     106 ..       9     148 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.1e-05
     DUF3552  67 eelekelkerrnelqrlekRllqkeetLdrkeeslekkeesleekekelkqkeqsleekeeeleelveeqrqeLeris 144
                 + +++el++  ++lq++   l+ +ee L+ + ++l+ ++++l+++ ++++++e++l++  +e+e++  e +  Le +s
  KKY21414.1  29 DSINSELTSAPENLQNQIIELEAREEILETRVKDLRTRNSTLTAHLHQVERQESRLRSSLQEAERTNLEDEVALEAMS 106
                 67899******************************************************************9999988 PP

>> FPP  Filament-like plant protein, long coiled-coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   4.7   3.9e-05     0.019     677     760 ..      26     109 ..       3     145 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.9e-05
         FPP 677 plvsgsneskkeenkllkeeleelksekenlevelksatenleslkaqlqesEqllaelkseLeslkeskslaetqlkcmkesy 760
                    ++ n++ ++  ++l+++++el+++ e le+++k+   ++ +l a l++ E++ + l+s L+++++ +   e  l+ m+   
  KKY21414.1  26 TDLDSINSELTSAPENLQNQIIELEAREEILETRVKDLRTRNSTLTAHLHQVERQESRLRSSLQEAERTNLEDEVALEAMSAAV 109
                 2233334444778889999************************************************99988888888777655 PP

>> Myosin_tail_1  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   8.5   7.9e-05     0.039     881    1002 ..      15     140 ..       6     157 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.9e-05
  Myosin_tail_1  881 ldekRrleariaqleeeleeeqsnvellndrlrkatlqveqltaeLsaeRsasqksesarqqlerqnkelkakLqelegavkskykssiaalea 974 
                     + e  +l+++i++l+  + e  s  e l++++  ++ + e l++ ++  R+      +  +q+erq+  l++ Lqe e +       ++ a+ a
     KKY21414.1   15 AAEIEQLNKKITDLDSINSELTSAPENLQNQIIELEAREEILETRVKDLRTRNSTLTAHLHQVERQESRLRSSLQEAERTN-LEDEVALEAMSA 107 
                     446668***********************************************************************9885.46688999**** PP

  Myosin_tail_1  975 kiaqleeqleqeskerqa.....aaklvrrtek 1002
                      +  le  +++ + e q      a++   r+ek
     KKY21414.1  108 AVGGLEGWMDSFISEAQReastaATRPKTRNEK 140 
                     ******999986655443000002233334444 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   5.1   4.6e-05     0.023      30      83 ..      41      94 ..      29     105 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.6e-05
         GAS 30 slKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekd 83
                +l ++i el+++ee  e +++++ ++n+ l+  L+++e++  +Lr  l++ e+ 
  KKY21414.1 41 NLQNQIIELEAREEILETRVKDLRTRNSTLTAHLHQVERQESRLRSSLQEAERT 94
                799**********************************************99986 PP

>> Pox_F11  Poxvirus F11 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.2   0.00017     0.087     229     304 ..      17      91 ..      14     137 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
     Pox_F11 229 eLEksrfeitkelrtllkelneryndvyadmikls..eeivdeilkrlekaadsaladvkavrkaksklrGerslaaA 304
                 e+E+ + +it +   +  el    +++  ++i+l+  eei++  +k+l + + +  a +++v++  s+lr   sl+ A
  KKY21414.1  17 EIEQLNKKITDLD-SINSELTSAPENLQNQIIELEarEEILETRVKDLRTRNSTLTAHLHQVERQESRLR--SSLQEA 91 
                 5677777777655.8999999999*********9988******************************999..444444 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   5.8   0.00045      0.23      89     154 ..      16      80 ..       7      81 .. 0.79
   2 ?    6.3   3.2      0.02        10      42     136 ..      64     158 ..      60     167 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00045
  Jnk-SapK_ap_N  89 eerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklheretellkklkelverq 154
                     e ++l++k+++l++ n el    +n+++q+ +le +e+ l+++ + l +r + l  +l  +verq
     KKY21414.1  16 AEIEQLNKKITDLDSINSELTSAPENLQNQIIELEAREEILETRVKDLRTRNSTLTAHL-HQVERQ 80 
                    57789999999999999999999999999999999999999888888877766665544.446665 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.02
  Jnk-SapK_ap_N  42 asrneeeeaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeyskl 136
                     +rn   +a l +++++ ++L++ +++    + + e  le +  ++ + +  +++ +++ + e     ++ k  ++++ + +++++e +  y++ 
     KKY21414.1  64 RTRNSTLTAHLHQVERQESRLRSSLQEAERTNLEDEVALEAMSAAVGGLEGWMDSFISEAQREASTAATRPKTRNEKMLDPKSRQSEISPYYTQP 158
                    6789999999***************************************************************9999999999999998777765 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   5.7   0.00031      0.15      54     136 ..      23     109 ..      10     162 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00031
  HAUS-augmin3  54 ktie.....psdlkq..edvellevileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqelrkleeeekeakkklkeaqeel 136
                   k+i      +s   +  +++e l+ ++ e+e+ +e Le+ +++L+  +  ++ +l + + q + l + l++ e+++ e +  l+   +++
    KKY21414.1  23 KKITdldsiNS---EltSAPENLQNQIIELEAREEILETRVKDLRTRNSTLTAHLHQVERQESRLRSSLQEAERTNLEDEVALEAMSAAV 109
                   33332212112...1234666666666666666666666666666666666666666666666666666666666666665555555555 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   7.7     0.012         6      20      94 ..      17      90 ..       9      98 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHHHHHHHHHHHS-TT--EEEEETTEEEEE.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2 20 qikqletqlkelelvleelelldedtkvyklvGdvlvkq.dkeevkeeLeerketlekeiktlekqleklekelee 94
                 +i+ql++++++l++++ el +++e+   + ++ ++   +  +e+  ++L +r  tl++++ ++e+q+++l+  l+e
   KKY21414.1 17 EIEQLNKKITDLDSINSELTSAPEN--LQNQIIELEAREeILETRVKDLRTRNSTLTAHLHQVERQESRLRSSLQE 90
                 5666666666666666666666666..3333322222221334444445555555555555555555555555555 PP

>> Herpes_UL6  Herpesvirus UL6 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.2   0.00042      0.21     352     440 ..      19     104 ..       2     122 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00042
  Herpes_UL6 352 ekteqglkksvsnsvikcleeqineqfdtiekLkkenelllkklkelekeLerlreeakkeakarevdlltsstdaslenlpessalsk 440
                 e+ ++++ +   +s++  l++  +++ ++i +L++  e l++++k+l+++ ++l+++ ++ ++++e  l +s + a+  nl  + al+ 
  KKY21414.1  19 EQLNKKITD--LDSINSELTSAPENLQNQIIELEAREEILETRVKDLRTRNSTLTAHLHQ-VERQESRLRSSLQEAERTNLEDEVALEA 104
                 333333322..3799999999999999999999999999999999999999998666664.5555545555555555555655555554 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   5.8   0.00052      0.26     228     306 ..      17      94 ..      11     108 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00052
       IFT57 228 qmkkhkksieeslpetksqlkklhedisktlekiesrEkylnsqleellqeyreaqeelsevkekykqlsegvseltre 306
                 ++++++k+i++ l +++s+l+   e++++++ ++e+rE++l++++++l +  +++ ++l++v+++ + l ++++e +r+
  KKY21414.1  17 EIEQLNKKITD-LDSINSELTSAPENLQNQIIELEAREEILETRVKDLRTRNSTLTAHLHQVERQESRLRSSLQEAERT 94 
                 67788888865.7899*************************************************99999999888773 PP

>> Sipho_Gp157  Siphovirus Gp157
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   4.9   0.00058      0.29      20      98 ..      17      97 ..       7     105 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00058
  Sipho_Gp157 20 dvdeeeeeikdtLesleeeieeKaeniakviknleaeaeaikeeekrLaerkkslen...kaenLKeyleeameaaglkkik 98
                 ++++ ++ i+d L+s+++e+ +  en    i +lea++e ++++ k L  r+ +l +   ++e+  ++l++++++a+ + ++
   KKY21414.1 17 EIEQLNKKITD-LDSINSELTSAPENLQNQIIELEAREEILETRVKDLRTRNSTLTAhlhQVERQESRLRSSLQEAERTNLE 97
                 44555556777.****************************************988762225677778888888888887776 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.8   0.00058      0.29     187     261 ..      18      89 ..       5     154 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00058
  Fmp27_WPPW 187 iekleekleelelkseke...deelkeeieelekeikelkeklefletlledlkeseesse.......eeeskskelsaastses 261
                 ie+l++k+ +           ++el++  e+l+++i el+ + e+let ++dl++++++ +       +      ++s+ ++s +
  KKY21414.1  18 IEQLNKKITD-------LdsiNSELTSAPENLQNQIIELEAREEILETRVKDLRTRNSTLTahlhqveR------QESRLRSSLQ 89 
                 2223333332.......2233444666667777777777777777777777776666533343332220......1111111111 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   7.6   0.00087      0.43     156     256 ..      19      94 ..       7     113 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00087
        Spc7 156 elLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeae 254
                 e+L+k+   ld++  el++  ++l++++ +l++                       ++    +++++++l+++  +l++ + +++ q s+l++ ++eae
  KKY21414.1  19 EQLNKKITDLDSINSELTSAPENLQNQIIELEA----------------------REEI---LETRVKDLRTRNSTLTAHLHQVERQESRLRSSLQEAE 92 
                 233333333333333333333333333333333......................2222...2355566666666666666666666666666666666 PP

        Spc7 255 rv 256
                 r+
  KKY21414.1  93 RT 94 
                 65 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  11.7     0.002      0.98      54     128 ..      17      91 ..       7     107 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.002
        ADIP  54 qreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrlknalqqi 128
                 + e+ln++i +l++ ++ l+s+ e l++q  +le + + ++ + ++l++++ tl+++l++  ++ +rl++ lq+ 
  KKY21414.1  17 EIEQLNKKITDLDSINSELTSAPENLQNQIIELEAREEILETRVKDLRTRNSTLTAHLHQVERQESRLRSSLQEA 91 
                 558999999999999999999999999999999999999999999999999999999999999999999999865 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  10.9    0.0018      0.88      11      90 ..      18      94 ..      10     107 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0018
      APG6_N 11 leeldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleee 90
                +e+l+k++ ++++   ++++  ++l+++  e e     +e le ++++l+   ++l + L ++e+++++l++ l+++e++
  KKY21414.1 18 IEQLNKKITDLDSINSELTSAPENLQNQIIELE---AREEILETRVKDLRTRNSTLTAHLHQVERQESRLRSSLQEAERT 94
                566777777777777777777777777765554...56678888888888888888888888888888888888888765 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.4     0.015       7.7      74     102 ..      10      38 ..       7      44 .. 0.83
   2 ?    9.9   4.6    0.0019      0.95       7      93 ..      27     113 ..      24     136 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.015
     DUF4200  74 lkkekeaeikklkaeietlkseiekleek 102
                 +++ k+aei++l+++i++l s +++l  +
  KKY21414.1  10 QNEGKAAEIEQLNKKITDLDSINSELTSA 38 
                 56789***************999988765 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0019
     DUF4200   7 emfevqealeakkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlk 93 
                 +++ ++ +l  + e++q++  +l+ ree le + + l+ +   ++  l + +++ +r +   +e ++ + e e  ++ + a +  l+
  KKY21414.1  27 DLDSINSELTSAPENLQNQIIELEAREEILETRVKDLRTRNSTLTAHLHQVERQESRLRSSLQEAERTNLEDEVALEAMSAAVGGLE 113
                 5778899999999999*************************************************9999999999988888777766 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   4.3   6.2e-05     0.031      71     127 ..      16      75 ..       7      77 .. 0.81
   2 ?    7.7   2.5    0.0068       3.4      59     103 ..      60     104 ..      58     109 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.2e-05
  TPR_MLP1_2  71 aeiaelk...aeaesakaeleeseesweeqkeelekelselekriedlneqNklLhdQlE 127
                 aei++l+   ++++s ++el  + e++++q  ele + + le+r++dl + N++L  +l 
  KKY21414.1  16 AEIEQLNkkiTDLDSINSELTSAPENLQNQIIELEAREEILETRVKDLRTRNSTLTAHLH 75 
                 4555555111457899999************************************99885 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0068
  TPR_MLP1_2  59 lqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelek 103
                 +++lr++ ++l+a +++++ +  +++++l+e+e    e + +le 
  KKY21414.1  60 VKDLRTRNSTLTAHLHQVERQESRLRSSLQEAERTNLEDEVALEA 104
                 5789*******************************9999999986 PP

>> DUF4472  Domain of unknown function (DUF4472)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   7.2   0.00026      0.13      20      92 ..      22      94 ..      15     107 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00026
     DUF4472 20 nklreqheaekfelknkvlalenrvlelelerekaaeeiqslrerlaeleeekkeleeeyvvlkknyqaleke 92
                nk    +++ + el++   +l+n+++ele+++e +++  ++lr+r  +l ++ +++e + + l++++q+ e+ 
  KKY21414.1 22 NKKITDLDSINSELTSAPENLQNQIIELEAREEILETRVKDLRTRNSTLTAHLHQVERQESRLRSSLQEAERT 94
                555567789999*******************************************************987653 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.4       0.9   4.5e+02      26      47 ..      17      45 ..      12      51 .. 0.61
   2 ?   11.9   0.6   0.00037      0.18      25      53 ..      51      79 ..      50      83 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.9
                HHHHHHHHHHHHHHHHHHH.......HHH CS
      bZIP_2 26 keeeleervkeLeeeNaqL.......rqk 47
                + e+l +++ +L + N++L       +++
  KKY21414.1 17 EIEQLNKKITDLDSINSELtsapenlQNQ 45
                56777777777777777774433333444 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00037
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 25 akeeeleervkeLeeeNaqLrqkveqLek 53
                a+ee le rvk+L+++N++L + + q+e+
  KKY21414.1 51 AREEILETRVKDLRTRNSTLTAHLHQVER 79
                68999***************999999887 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.5    0.0011      0.54     102     179 ..       9      93 ..       1     100 [. 0.84
   2 ?    2.5   1.7      0.22   1.1e+02      91     170 ..      67     151 ..      56     158 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0011
      DUF724 102 deqtklleerkklekkieeeesekrkleeeidelekkilelerqlallk.......ekkeaadkeiarlkseaekleeeledveq 179
                 ++ + ++ e+++l+kki++ +s +++l +  ++l+++i+ele +++ l        +++++  +++ +++ ++++l+ +l+++e+
  KKY21414.1   9 SQNEGKAAEIEQLNKKITDLDSINSELTSAPENLQNQIIELEAREEILEtrvkdlrTRNSTLTAHLHQVERQESRLRSSLQEAER 93 
                 5666788999***********************************9999777777777777888888888888888888887775 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.22
      DUF724  91 qsrl.nkLlslkdeqtklleerkklekkieeeesekrkleeeid....elekkilelerqlallkekkeaadkeiarlkseaekl 170
                  s l   L ++  + ++l++ ++++e+   e+e + + +++ +      +++ i+e +r++ ++ ++ ++ ++++ + ks ++++
  KKY21414.1  67 NSTLtAHLHQVERQESRLRSSLQEAERTNLEDEVALEAMSAAVGglegWMDSFISEAQREASTAATRPKTRNEKMLDPKSRQSEI 151
                 4555234556667777788888888888888888888888887755556777888888888888877777777777777776666 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   5.7    0.0066       3.3      10      76 ..      40     108 ..      10     143 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0066
     DUF4795  10 kklqeaieklqeelekleekvkelekrledkekklealkkqieelekvk..adkeeveeelaekadkea 76 
                 ++lq++i +l+++ e le +vk+l +r +++  +l  ++ q ++l+++   a+++++e+e+a+ a   a
  KKY21414.1  40 ENLQNQIIELEAREEILETRVKDLRTRNSTLTAHLHQVERQESRLRSSLqeAERTNLEDEVALEAMSAA 108
                 567788888888888888888888888888888888888888888776544777777777777665554 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.4    0.0022       1.1      64     155 ..      11      99 ..       2     140 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0022
  V_ATPase_I  64 eapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleeeeeeeeeeeseeeeeekeeeeeeeseeeeeeelleee 155
                 ++ +++e+++l++++++l++  +el++  e+l+++  el+  +++le+  + l++++++ +++ ++ e++   e++ ++s +e+e+++le+e
  KKY21414.1  11 NEGKAAEIEQLNKKITDLDSINSELTSAPENLQNQIIELEAREEILETRVKDLRTRNSTLTAHLHQVERQ---ESRLRSSLQEAERTNLEDE 99 
                 5566778888888888888888888888888888888888888888777666665433333322222211...1112222222222333333 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.4    0.0033       1.6     393     478 ..      13      99 ..       5     152 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0033
    Macoilin 393 skkdalvrLeadikkLkaeLqasrqteqelrskissltseerslkselqqlkkendllqtklhelvsakqkdkqtlqqlekr.Lkee 478
                 +k  ++++L+++i  L +  ++     ++l+++i  l ++e  l + ++ l+  n +l ++lh++  +  + + +lq+ e+  L++e
  KKY21414.1  13 GKAAEIEQLNKKITDLDSINSELTSAPENLQNQIIELEAREEILETRVKDLRTRNSTLTAHLHQVERQESRLRSSLQEAERTnLEDE 99 
                 566667777777777777777777778888888888888888899999999999999999999888888888888888887514443 PP

>> UPF0449  Uncharacterised protein family UPF0449
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.7   0.00043      0.21      49     100 ..      10      61 ..       3      62 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00043
     UPF0449  49 eeedleaeveelYeqvrtylelnerLeeakeeLkqkceeLktageeLeeeie 100
                 ++e   ae+e+l ++++ + ++n +L +a e+L+++  eL++  e Le  ++
  KKY21414.1  10 QNEGKAAEIEQLNKKITDLDSINSELTSAPENLQNQIIELEAREEILETRVK 61 
                 57788899***************************************99987 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   8.0    0.0083       4.1      17      94 ..      16      93 ..       9      94 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0083
        BRE1 17 eqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKsselieqLkelekefvrklkelek 94
                ++++++ k++t+l +  + l++  +  ++++ +++   + le+ +k L++ +s  + + +q +  e+ ++++l+e+e+
  KKY21414.1 16 AEIEQLNKKITDLDSINSELTSAPENLQNQIIELEAREEILETRVKDLRTRNSTLTAHLHQVERQESRLRSSLQEAER 93
                5677888889999999999999999999**********************99999999999999************98 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.2     0.039        20      15      34 ..      17      36 ..      15      38 .. 0.90
   2 ?    5.5   3.0     0.043        21      17      45 ..      40      68 ..      37      80 .. 0.81
   3 ?    3.5   0.8      0.17        87      16      43 ..      60      87 ..      54     100 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.039
       TSC22 15 eVevLkekIkeLeernsele 34
                e+e+L +kI++L + nsel 
  KKY21414.1 17 EIEQLNKKITDLDSINSELT 36
                89***********9999985 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.043
       TSC22 17 evLkekIkeLeernseleeENslLkalas 45
                e+L+++I eLe+r + le+  + L++  s
  KKY21414.1 40 ENLQNQIIELEAREEILETRVKDLRTRNS 68
                89**********99999999988886544 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.17
       TSC22 16 VevLkekIkeLeernseleeENslLkal 43
                V  L+++   L+++ +++e++ s L++ 
  KKY21414.1 60 VKDLRTRNSTLTAHLHQVERQESRLRSS 87
                5566777777777777777777777765 PP

>> MCC-bdg_PDZ  PDZ domain of MCC-2 bdg protein for Usher syndrome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.49   2.4e+02       1      25 [.      20      44 ..      20      50 .. 0.86
   2 ?    5.9   4.4     0.025        13       4      53 ..      44      93 ..      41     109 .. 0.57

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.49
  MCC-bdg_PDZ  1 rLksrIeeLkaqnelLsltleerkq 25
                 +L+++I +L + n  L+ + e  ++
   KKY21414.1 20 QLNKKITDLDSINSELTSAPENLQN 44
                 79**************998776665 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.025
  MCC-bdg_PDZ  4 srIeeLkaqnelLsltleerkqqseeLsldlgkaEsnatALvlALeyser 53
                 ++I eL+a+ e L+   +  ++++  L+  l + E++ + L++ L+  er
   KKY21414.1 44 NQIIELEAREEILETRVKDLRTRNSTLTAHLHQVERQESRLRSSLQEAER 93
                 55555555555555555555555555555555555555555555554444 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.2    0.0076       3.8      35      95 ..      24      84 ..       9      86 .. 0.84
   2 ?   -0.1   0.0       2.7   1.4e+03       4      45 ..     256     296 ..     243     298 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0076
  Syntaxin-6_N 35 tseeldetrteLrkalrsiewdledLeetvriveknpskfkidekelsrrrafveevreev 95
                  +  +ld+ ++eL +a +++++++ +Le   +i+e   ++ + ++++l+ + + ve+ ++++
    KKY21414.1 24 KITDLDSINSELTSAPENLQNQIIELEAREEILETRVKDLRTRNSTLTAHLHQVERQESRL 84
                  367899*****************************9999********99999999887765 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 2.7
  Syntaxin-6_N   4 fevkeeVqkslnkaeslyrrwerlledtssstseeldetrte 45 
                    +v+e +++ l++  +  +r ++l++++    +eel et+te
    KKY21414.1 256 RDVEESIRSRLRSRSGGTAR-NELQQEPGRIGQEELPETETE 296
                   45555555555555554444.566677666557888777776 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7  10.8      0.59     3e+02       2      54 ..      42     101 ..      14     108 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.59
       Spc24   2 ldnekfriakelsdleselesleselaelkeeleeleeesee.....keser..vedetl 54 
                 l+n+ +++    + le+ +++l+++ + l + l+++e+++++     +e+er   ede++
  KKY21414.1  42 LQNQIIELEAREEILETRVKDLRTRNSTLTAHLHQVERQESRlrsslQEAERtnLEDEVA 101
                 677888888888888888888888888888888888888888766653333333445555 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   1.6     0.029        15      22      51 ..      14      43 ..       6      45 .. 0.81
   2 ?    9.3   1.2    0.0018      0.91      28      53 ..      41      66 ..      40      73 .. 0.86
   3 ?   -0.3   0.3       1.8   9.2e+02      34      47 ..      89     100 ..      67     105 .. 0.47

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.029
                HHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC 22 lkqeiaalqaelaklkaeneeLeaevkdLk 51
                + +ei++l++++  l   n eL++  ++L+
  KKY21414.1 14 KAAEIEQLNKKITDLDSINSELTSAPENLQ 43
                568999999999999999999998888884 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0018
                HHHHHHHHHHHHHHHHHHHHCC-XXX CS
       DivIC 28 alqaelaklkaeneeLeaevkdLksd 53
                 lq+++ +l a++e Le +vkdL+  
  KKY21414.1 41 NLQNQIIELEAREEILETRVKDLRTR 66
                69*********************865 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHHH CS
       DivIC  34 aklkaeneeLeaev 47 
                 +   ae+ +Le+ev
  KKY21414.1  89 Q--EAERTNLEDEV 100
                 2..23444444444 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.5      0.13        62      10      52 ..       4      46 ..       1      53 [. 0.81
   2 ?    4.3   7.6      0.12        61       5      58 ..      41      94 ..      16     112 .. 0.53

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.13
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA 10 leeleeqleelleeleelkeelaelleenaeLeleneklrerl 52
                +  l +q e   +e+e+l++++++l   n+eL+   e+l++++
  KKY21414.1  4 VGYLGSQNEGKAAEIEQLNKKITDLDSINSELTSAPENLQNQI 46
                55667777888899******************99999999887 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.12
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXX CS
        YabA  5 elfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekk 58
                +l +++ ele + e l +++++l+++ ++l+ + +++e + ++lr+ l+e+e++
  KKY21414.1 41 NLQNQIIELEAREEILETRVKDLRTRNSTLTAHLHQVERQESRLRSSLQEAERT 94
                344444444444444444444444444444444444444455555555444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1339  (0.0746835); expected 358.6 (0.02)
Passed bias filter:                      780  (0.0435049); expected 358.6 (0.02)
Passed Vit filter:                       164  (0.00914719); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              36  [number of targets reported over threshold]
# CPU time: 0.83u 0.36s 00:00:01.19 Elapsed: 00:00:00.56
# Mc/sec: 1734.11
//
Query:       KKY21415.1  [L=607]
Description: putative wd repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-11   44.0  10.9    0.00016   22.4   0.0    6.2  7  WD40         WD domain, G-beta repeat
    5.6e-11   42.6   0.7    2.8e-06   27.5   0.0    4.1  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    2.9e-05   24.0   0.0     0.0014   18.6   0.0    3.2  4  eIF2A        Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
      0.065   13.2   0.0         13    5.9   0.0    3.6  4  PD40         WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1         4   1.8e+04       4      13 ..     175     184 ..     174     189 .. 0.70
   2 ?   -1.5   0.1       1.2   5.5e+03       8      37 ..     208     235 ..     201     236 .. 0.67
   3 !    6.3   0.0    0.0044        20      13      38 .]     264     292 ..     240     292 .. 0.80
   4 !    6.3   0.0    0.0042        19       7      38 .]     302     336 ..     296     336 .. 0.73
   5 ?   -1.3   0.7       1.1   4.8e+03      13      28 ..     356     371 ..     339     402 .. 0.67
   6 !   10.7   0.0   0.00017      0.77      10      37 ..     461     478 ..     437     479 .. 0.60
   7 !   22.4   0.0   3.6e-08   0.00016       9      38 .]     498     527 ..     487     527 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4
                 EEEEE.SSSSE CS
        WD40   4 lrtlt.GHssv 13 
                 ++tlt GH sv
  KKY21415.1 175 IHTLTnGH-SV 184
                 68887799.54 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.2
                 ESSSSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   8 tGHssvtslafspdgawlasGsdDgtvriW 37 
                   H  vt   + p  + +++++    + iW
  KKY21415.1 208 HEH--VTKALWRPKDSTVLASMGYDFCGIW 235
                 445..9877788888888877436666666 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0044
                 EEEEEEETTSSEEEEEET...TSEEEEEE CS
        WD40  13 vtslafspdgawlasGsd...DgtvriWd 38 
                 v++la+ p+g++la +++    g +ri+d
  KKY21415.1 264 VSALAWEPNGSMLAVSTYnelSGELRIYD 292
                 799**********9876455688888887 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0042
                 EESS.SSEEEEEEETTSSEEEEE...ETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawlasG...sdDgtvriWd 38 
                 l +  + +t l+++  g+ l+ G   + D ++ +Wd
  KKY21415.1 302 LPAAqKLITTLKWQNVGSRLV-GsstGQDFSLVVWD 336
                 55553449***9999999998.412357*******9 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 1.1
                 EEEEEEETTSSEEEEE CS
        WD40  13 vtslafspdgawlasG 28 
                 ++++++ ++g+  +++
  KKY21415.1 356 IYDVDWASHGNVSIAC 371
                 6677666666663322 PP

  == domain 6  score: 10.7 bits;  conditional E-value: 0.00017
                 SSSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  10 HssvtslafspdgawlasGsdDgtvriW 37 
                 H  ++++        + ++s Dgtv++W
  KKY21415.1 461 H-AIHDF--------I-TASLDGTVKVW 478
                 2.24444........6.6888******* PP

  == domain 7  score: 22.4 bits;  conditional E-value: 3.6e-08
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 G  s++ +++fspdg+++a++s  + ++iWd
  KKY21415.1 498 GSeSPILAVKFSPDGSYIAAAS-YNQLKIWD 527
                 66678*****************.*******9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.3     6e+03      39      57 ..     209     227 ..     199     255 .. 0.75
   2 !   27.5   0.0   6.2e-10   2.8e-06      35      91 ..     258     316 ..     248     317 .. 0.89
   3 ?   -2.6   0.1       1.6   7.2e+03      41      70 ..     356     386 ..     354     414 .. 0.58
   4 !    8.9   0.0    0.0004       1.8      14      72 ..     470     533 ..     465     551 .. 0.71
   5 ?    1.0   0.0      0.12   5.3e+02      42      58 ..     581     597 ..     552     604 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.3
  ANAPC4_WD40  39 sevrsLaWkpdgklLavay 57 
                  ++v++  W+p+++    ++
   KKY21415.1 209 EHVTKALWRPKDSTVLASM 227
                  6788999999887655544 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 6.2e-10
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysd...gevrlldaesgkvvhslsvksekavtclgWge 91 
                  + ++  v++LaW+p+g++Lav++ +   ge+r++d  + ++v++l+++++  +t+l+W++
   KKY21415.1 258 KVDGVLVSALAWEPNGSMLAVSTYNelsGELRIYDGAELELVETLPAAQKL-ITTLKWQN 316
                  567889****************9864558********************96.******86 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.6
  ANAPC4_WD40  41 vrsLaWkpdgkl.Lavaysdgevrlldaesg 70 
                  + ++ W   g++ +a a   g v  + a s 
   KKY21415.1 356 IYDVDWASHGNVsIACAAGRGVVYQCRATSD 386
                  5667777777764555555555555555444 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.0004
  ANAPC4_WD40  14 tedgellvfRlng.....qrvwtl.eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkv 72 
                  + dg + v R n        +++l    +++s + +++++pdg+ +a a s +++++ d+++g v
   KKY21415.1 470 SLDGTVKVWRYNDqirdiSCLFKLaMGGGSESPILAVKFSPDGSYIAAA-SYNQLKIWDSNTGGV 533
                  557778888887733322234444666789999*************976.6789*******9976 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.12
  ANAPC4_WD40  42 rsLaWkpdgklLavays 58 
                  +sL+W  +gk +a++  
   KKY21415.1 581 HSLSWDAEGKRIAFGLG 597
                  59***********9875 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.1e-07    0.0014     105     163 ..     266     326 ..     255     359 .. 0.89
   2 ?   -1.6   0.0      0.46   2.1e+03      48      71 ..     344     365 ..     310     372 .. 0.61
   3 ?    1.4   0.0     0.058   2.6e+02     105     129 ..     505     525 ..     470     551 .. 0.75
   4 ?   -2.6   0.0      0.92   4.1e+03      53      82 ..     571     600 ..     564     605 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.1e-07
                 EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT..--EEEE-TTSSEEEEEE- CS
       eIF2A 105 tiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaan..atlvewspdgryvlTatt 163
                 ++ ++p+g +++++ + +l+Gel i+d  +++ ++++ aa+   t+++w++ g+ ++ ++t
  KKY21415.1 266 ALAWEPNGSMLAVSTYNELSGELRIYDGAELELVETLPAAQklITTLKWQNVGSRLVGSST 326
                 689******************************99987765226999****9999988877 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.46
                 T--EEECCEESSS.EEEEEE-TTS CS
       eIF2A  48 kkksevvelkkegpihdvaWspks 71 
                 +++++++++  e  i+dv W +++
  KKY21415.1 344 ESSIQSIPIPDE--IYDVDWASHG 365
                 455566666666..8888887765 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.058
                 EEEE-TTSSEEEEE-TTSSS-EEEE CS
       eIF2A 105 tiffspkgklvllaGfgnlaGelei 129
                 +++fsp g +++ a + +l    +i
  KKY21415.1 505 AVKFSPDGSYIAAASYNQL----KI 525
                 4566666666666666555....44 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 0.92
                 ECCEESSS.EEEEEE-TTSS-EEEEESSSS CS
       eIF2A  53 vvelkkegpihdvaWspkskefaviyGkmp 82 
                 +++ +++   h ++W+ ++k++a   G++ 
  KKY21415.1 571 NMDADEADLEHSLSWDAEGKRIAFGLGQQL 600
                 555555556678888888888877666655 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       0.1   4.7e+02      15      37 ..     268     291 ..     266     291 .. 0.86
   2 ?   -3.6   0.0       2.6   1.2e+04      20      30 ..     318     328 ..     318     329 .. 0.86
   3 ?    5.9   0.0    0.0029        13      16      24 ..     508     516 ..     499     521 .. 0.86
   4 ?    0.9   0.0       0.1   4.7e+02      11      25 ..     580     594 ..     579     594 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.1
                 EE-TTSSEEEEEEECT..TCEEEE CS
        PD40  15 sfSPDGkrlaFsSdRg.sGkpdIy 37 
                 ++ P+G++la s + + sG  +Iy
  KKY21415.1 268 AWEPNGSMLAVSTYNElSGELRIY 291
                 688*******99996699988888 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.6
                 SSEEEEEEECT CS
        PD40  20 GkrlaFsSdRg 30 
                 G+rl+ sS+++
  KKY21415.1 318 GSRLVGSSTGQ 328
                 899**9*9965 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0029
                 E-TTSSEEE CS
        PD40  16 fSPDGkrla 24 
                 fSPDG+++a
  KKY21415.1 508 FSPDGSYIA 516
                 9*******8 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.1
                 EEEEEE-TTSSEEEE CS
        PD40  11 egaPsfSPDGkrlaF 25 
                 e++ s++  Gkr+aF
  KKY21415.1 580 EHSLSWDAEGKRIAF 594
                 566799999*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 3623.18
//
Query:       KKY21416.1  [L=358]
Description: putative rhomboid family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-28   98.3   2.8    6.3e-28   97.3   2.8    1.6  1  DUF1751   Eukaryotic integral membrane protein (DUF1751)
    1.4e-07   31.6   5.9    1.4e-07   31.6   5.9    1.6  2  Rhomboid  Rhomboid family
  ------ inclusion threshold ------
      0.028   14.1   0.5      0.044   13.4   0.5    1.2  1  DUF5549   Family of unknown function (DUF5549)


Domain annotation for each model (and alignments):
>> DUF1751  Eukaryotic integral membrane protein (DUF1751)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   2.8   1.1e-31   6.3e-28       1      99 []      52     150 ..      52     150 .. 0.99

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 1.1e-31
     DUF1751   1 PgallpypwtlltasfveqnvwkvlvslltlllggkylErlWgskEllkFilvvnvitnllvvlltlllylvtkseelllvpisGlagilagflvalkQ 99 
                 P++ l+ypwt+lta+fveqnv++++v+ l++++ggkylEr+WgskE+ +F+l+v+v++nl+++ +++l ++++ + +  l++i+G+++ +a+fl a+kQ
  KKY21416.1  52 PSQCLFYPWTFLTATFVEQNVFTLIVNGLAMFYGGKYLERAWGSKEFGIFVLIVAVVPNLIIMPVYVLWAAISGNVDRALTQICGGITTQAAFLCAFKQ 150
                 999**************************************************************************999******************9 PP

>> Rhomboid  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       0.7   4.2e+03     102     122 ..       9      29 ..       3      35 .. 0.71
   2 !   31.6   5.9   2.3e-11   1.4e-07       7     143 ..      59     207 ..      56     214 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.7
                 HC...CCCCCCCCCCHHHCTS CS
    Rhomboid 102 iallllllfillnlvlgllpr 122
                 +  +ll+++++l++++ + ++
  KKY21416.1   9 VTRILLIIIVALSFLYNIARW 29 
                 445778888888888887776 PP

  == domain 2  score: 31.6 bits;  conditional E-value: 2.3e-11
                 TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHH-S..........-EESSHHHHHHHHHHHHHHHH CS
    Rhomboid   7 lwrlltsmflHagwlHllfNmlallvfGsplerrlGslrflllyllsgla.......gsllsllfsaeses.......plvGaSGaifgllgallvlvp 91 
                  w++lt++f+  +++ l++N la+++ G+ ler +Gs++f+++ l+++++         +l +++s             ++G     +++l a+  lvp
  KKY21416.1  59 PWTFLTATFVEQNVFTLIVNGLAMFYGGKYLERAWGSKEFGIFVLIVAVVpnliimpVYVLWAAIS----GnvdraltQICGGITTQAAFLCAFKQLVP 153
                 7*********************************************88884444433222333333....034568888889999999*********** PP

                 CCCCGS----HC......CCCCCCCCCCHHHCTSSSTTTHHHHHHHHHHHHHHHH CS
    Rhomboid  92 rnrkllrkliia...llllllfillnlvlgllpraggvsnlAHlgGllaGlllgl 143
                 ++  +l+k +++     + ++f++ln+v gl++++   + +   +Gll+ +++ +
  KKY21416.1 154 EHTVSLFKGFVKvrvKHFPAVFLVLNAVSGLIAGT-DTAAILSWVGLLTSWTYLR 207
                 ************987778899************98.3332223345555555554 PP

>> DUF5549  Family of unknown function (DUF5549)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.5   7.3e-06     0.044      76     169 ..     255     348 ..     248     356 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.3e-06
     DUF5549  76 yslqqslpscsctsqpshiqpgtvrrpprgrggwe.vrrrpgrgrgrqrrwgleraeqaerglagepgagpktppvtlpsstppa.qdgkkeargl 169
                 y++  s+ +c+  s    i  g  r   rg  g   + +  grgrg +r     r   a ++l +  +a   + p+t+p +  pa q+g+   +g 
  KKY21416.1 255 YNVLVSIGACTPFSAE-DIASGNERAAARGEAGLPsLLNNVGRGRG-KREEAERRRALALKALDQRLQAASTNRPATQPVAVSPAvQEGQSSLGGT 348
                 7777777888777665.8999999*****999986155667*****.5554555566677888888999999*******99555449999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 2163.87
//
Query:       KKY21417.1  [L=330]
Description: hypothetical protein UCRPC4_g03680 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.054   11.0   0.0      0.088   10.3   0.0    1.2  1  HHV6-IE   Human herpesvirus 6 immediate early protein


Domain annotation for each model (and alignments):
>> HHV6-IE  Human herpesvirus 6 immediate early protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   4.9e-06     0.088      78     132 ..     244     298 ..     231     307 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 4.9e-06
     HHV6-IE  78 diesknvsyssnveegaddelktlvaqsvgnciqsigasvkaamkqeqsdmedkl 132
                 +i ++++   + +eeg +de+k+  a+  g ci s+  + +   +qe  d  d++
  KKY21417.1 244 HIRARQIVSVDRLEEGRQDEIKAAFANVNGSCIGSLNGTTHNDKHQEACDTPDDF 298
                 577788888899***********************************99988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:00.56
# Mc/sec: 1763.45
//
Query:       KKY21418.1  [L=729]
Description: putative hmg box transcriptional [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-18   67.2   1.7    1.5e-18   66.9   0.2    1.9  2  HMG_box    HMG (high mobility group) box
    2.9e-07   31.0   2.4    0.00028   21.4   0.2    2.4  2  HMG_box_2  HMG-box domain
  ------ inclusion threshold ------
        2.3    5.2   6.1        3.2    4.8   6.1    1.1  1  GREB1      Gene regulated by oestrogen in breast cancer


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.2   2.6e-22   1.5e-18       7      69 .]       4      66 ..       2      66 .. 0.98
   2 ?   -2.5   0.1       1.2   7.1e+03      16      28 ..     529     541 ..     527     543 .. 0.78

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 2.6e-22
                HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box  7 afflfskeqraklkaenPelknaeiskklgekWkalseeeKkkYeekaekekaryekekpeyk 69
                af+l++++ +a ++a+nP+l n eisk++g++W+al++++K ++++ ae+ek r+++++p+y+
  KKY21418.1  4 AFILYRQHYQAAVVAQNPGLANPEISKIIGKQWSALPQSVKDEWKALAEEEKVRHQQQYPDYR 66
                8*************************************************************6 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
                 HHHHHHHSTTS-H CS
     HMG_box  16 raklkaenPelkn 28 
                  ++ k+enP+++ 
  KKY21418.1 529 SDQPKQENPTMTT 541
                 56779*****985 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   4.7e-08   0.00028      10      72 ..       4      65 ..       2      66 .. 0.95
   2 !    9.1   0.2   0.00033         2       6      39 ..     463     496 ..     459     499 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 4.7e-08
                HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-SS-- CS
   HMG_box_2 10 AYalfvqemipelkrkGnpviglaevsklcsekWkalseeeKekYeekAkedkkrydrealty 72
                A++l+ q  ++ + ++ np     e+sk ++++W al+++ K +++  A e k+r +++ ++y
  KKY21418.1  4 AFILYRQHYQAAVVAQ-NPGLANPEISKIIGKQWSALPQSVKDEWKALAEEEKVRHQQQYPDY 65
                89**************.**99999*********************************987765 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00033
                 SS--HHHHHHHTTHHHHHHHT--.-SSHHHHTGGG CS
   HMG_box_2   6 aarnAYalfvqemipelkrkGnp.viglaevsklc 39 
                 +++ AY+++v + ++++ ++ ++ v  +  +sk++
  KKY21418.1 463 RKQDAYLMYVDTVKETHEKS-REmVEWVTQFSKKV 496
                 7899****************.88577788898886 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   6.1   0.00053       3.2    1133    1301 ..     479     650 ..     439     666 .. 0.42

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.00053
       GREB1 1133 adaaeessktspvkvekseskdavesglsskasakselseasaaaasaseeakspkasv....tseeeeseeskekekeslsketesqlsleaseqk 1225
                  ++++ e  +++ +  +k ++ +  + +++s++  ++ ++   + ++++ +++ +pk++     ts ++e+ e+ +    s+s + +s +s ++++++
  KKY21418.1  479 HEKSREMVEWVTQFSKKVQTASGGADPQESRKDRDAVMEGD-QDQSAEVQQSDQPKQENptmtTSPTDETGETLKDI--SMS-DDTSPTSATEPQHQ 571 
                  11111111222222222222333333344444444444432.22222222223333322000022222222222222..222.22222333333333 PP

       GREB1 1226 ealdakasskssssssssssassPsss.cslakavkrP...pivllskavydiltss.dssglpksssllPhadvaWassl 1301
                     +  +++   + +sss+++ sP++s +  +    +P   pi l++   y++ t    s ++p s s+ P  + +Wa++l
  KKY21418.1  572 LRQNPPETPMAIDDDSSSPTSVSPKTSnITHTPDPPTPtpiPIALIPS--YHLSTVDlASINIPVSDSYTPLDHWQWAAAL 650 
                  333334555566666666666666433023333333331113334443..5555543157789999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       936  (0.0522059); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.35s 00:00:01.17 Elapsed: 00:00:00.53
# Mc/sec: 4145.82
//
Query:       KKY21419.1  [L=1519]
Description: putative elongation factor 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-67  224.8   0.3    1.1e-66  224.1   0.3    1.4  1  GTP_EFTU      Elongation factor Tu GTP binding domain
    7.9e-33  112.8   0.0      2e-32  111.5   0.0    1.7  1  EFG_IV        Elongation factor G, domain IV
      1e-21   76.7   0.0    2.8e-21   75.4   0.0    1.8  1  EFG_C         Elongation factor G C-terminus
    3.6e-12   46.5   0.0    1.4e-11   44.7   0.0    2.1  1  GTP_EFTU_D2   Elongation factor Tu domain 2
    2.2e-10   40.4   0.0    6.2e-10   39.0   0.0    1.7  1  EFG_II        Elongation Factor G, domain II
    3.6e-09   36.3   0.1      2e-08   33.9   0.0    2.4  2  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    2.3e-05   24.6   0.1    6.9e-05   23.1   0.1    1.8  1  PWI           PWI domain
    4.3e-05   23.5   0.0    4.3e-05   23.5   0.0    2.7  2  RRM_3         RNA binding motif
    6.9e-05   22.7   2.6    0.00013   21.8   2.6    1.4  1  zf-CCCH       Zinc finger C-x8-C-x5-C-x3-H type (and similar)
     0.0001   22.4   0.1    0.00028   20.9   0.1    1.8  1  MMR_HSR1      50S ribosome-binding GTPase
  ------ inclusion threshold ------
       0.04   14.0   2.1      0.079   13.0   2.1    1.5  1  zf_CCCH_4     Zinc finger domain
      0.048   13.7   0.1       0.13   12.3   0.1    1.8  1  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif
        4.4    7.6  13.2         17    5.7  13.2    2.0  1  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
        7.4    5.8   9.9         16    4.7   9.9    1.4  1  DUF4407       Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.1   0.3   8.8e-70   1.1e-66       2     194 .]      18     344 ..      17     344 .. 0.93

  Alignments for each domain:
  == domain 1  score: 224.1 bits;  conditional E-value: 8.8e-70
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE..............T.TCSSEEEEEEEESSSGGGHH CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle..............k.etkkylinliDtPGHvdFsk 85 
                 +irn+++i+hvDhGK+TLtd+L++++g+is   +ka+e+r++Dt+++E+ rgiTiks+aisl+              k +++++l+nliD+PGHvdFs+
  KKY21419.1  18 NIRNMSVIAHVDHGKSTLTDSLVQRAGIISA--AKAGEARFTDTRQDEQDRGITIKSTAISLYanlqdeedikdipqKvDGNEFLVNLIDSPGHVDFSS 114
                 79*****************************..778889************************************9857******************** PP

                 HHHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH...............HHHHHHHHHTTTTTEE CS
    GTP_EFTU  86 evirglrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk...............eeklekygekgekevp 169
                 ev+++lrv+Dga++vvd+veGv++qte+vlr+al+e+++++v+iNK+Dr+  el+  +e+++q++sr+                ++ ++y+ k     +
  KKY21419.1 115 EVTAALRVTDGALVVVDCVEGVCVQTETVLRQALSERIKPVVIINKVDRALLELQVEKEDLYQSFSRTiesvnviiatyfdkaLGDTQVYPDK----GT 209
                 *****************************************************************9998888887777776555555555555....57 PP

                 EEEEBTTTTBTHH...................................................................................... CS
    GTP_EFTU 170 vvfgSalkgegvk...................................................................................... 182
                 v+fgS+l+g++++                                                                                      
  KKY21419.1 210 VAFGSGLHGWAFTvrqfavkyakkfgvdrnkmmerlwgdnffnpktkkwtknseyegkplerafnqfiltpifqifnavknakkeeiqtlvgkldiklt 308
                 **********99989999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                 ........................HHHHHHHHHSHH CS
    GTP_EFTU 183 ........................tllealvellps 194
                                         +lle+++ +lps
  KKY21419.1 309 geekdlegkqmlktvmrkflpaadALLEMVILHLPS 344
                 999999999999999999999999999999999986 PP

>> EFG_IV  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   0.0   1.5e-35     2e-32       2     120 ..     605     720 ..     604     721 .. 0.96

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 1.5e-35
                 CCESCEE.SS-CCHCCCCCCCHTSSSHCCCCCEEEECCTTTTSSEEEEE--STCCCHCCCCHHHHCCCCCCTTS-TTTS--EESEEEEEEEEE--T..T CS
      EFG_IV   2 qVayrEtirkpvkereeklkkqsggdgqyakvileiePleegsgnefvdetkggqvpkeyieavekGfqealkeGplagepvtdvkvtLldgslhe..v 98 
                 +++ +    ++ k+r+++l++++g+d ++a++i++++P++ ++ n ++d+tk +q+++e++++ + Gfq+a+keGp+a+ep++ ++++++d++lh+  +
  KKY21419.1 605 KISPK----DDFKARARILADEHGWDVTDARKIWCFGPET-TGANLLIDQTKAVQYLNEIKDSFVSGFQWATKEGPVAEEPMRSIRFNIMDVTLHAdaI 698
                 56667....8999*************************76.********************************************************** PP

                 TC-HHHHHHHHCHHHHHHHHCC CS
      EFG_IV  99 dsseaafkpaarralkeallkA 120
                 ++++++++p+arr+l++a l A
  KKY21419.1 699 HRGGGQIIPTARRVLYAATLLA 720
                 ******************9877 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.0   2.2e-24   2.8e-21       2      83 ..     724     806 ..     723     811 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 2.2e-24
                 EEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE..TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--H CS
       EFG_C   2 llEPivkveievpeeyvgkvisdlssrrGeiedmeqd.asgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpg 83 
                 llEP++ vei+vpe+ +g +++ l+++rG++ + eq+ ++  ++++a +P++e++gf+++Lr++T G++  ++ f++++ +pg
  KKY21419.1 724 LLEPVYLVEIQVPEQAMGGIYGVLTRKRGHVFSEEQRpGTPLFTVKAYLPVNESFGFQSDLRAATGGQAFPQLVFDHWQILPG 806
                 8************************************99****************************************9997 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   1.1e-14   1.4e-11       2      74 .]     394     470 ..     393     470 .. 0.93

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 1.1e-14
                  EEEEEEEEESEEETTEEEEEEC.TCTTSEE...EEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   2 tvalgrvysGtlkkGdevrilg.ndtskke...ivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  ++a+grv+sGt++ G +vri g n+t++k+    +  i+++  ++++  e+ + ++aG+iv+++g+++ ++++ tlt
   KKY21419.1 394 FYAFGRVFSGTVRSGLKVRIQGpNYTPGKKedlFIKAIQRTILMMGRFIEPLEDCPAGNIVGLVGIDQFLLKSGTLT 470
                  579**************************9***888888888888***********************999998886 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   4.8e-13   6.2e-10       4      66 ..     487     548 ..     485     555 .. 0.92

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 4.8e-13
      EFG_II   4 PvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkre 66 
                 Pv++ ++e k+ +d  kl + L+rl++ Dp + +     ++e +++G GelHlei ++ l+++
  KKY21419.1 487 PVVQRSVEVKNANDLPKLVEGLKRLSKSDPCVLTYIS-PSGEHVVAGAGELHLEICLKDLEED 548
                 9******************************977665.59******************99986 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.2   4.1e+03      10      23 ..     170     184 ..     166     191 .. 0.75
   2 !   33.9   0.0   1.6e-11     2e-08       5      66 ..    1112    1167 ..    1108    1171 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.2
                 SSHHHHHHHHHT.TS CS
       RRM_1  10 vteeeLkelFsk.fG 23 
                 v +e+L++ Fs  ++
  KKY21419.1 170 VEKEDLYQSFSRtIE 184
                 789*******97444 PP

  == domain 2  score: 33.9 bits;  conditional E-value: 1.6e-11
                  SETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETT CS
       RRM_1    5 nLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklgg 66  
                   +pp ++eee++e+Fs+fG++ ++k+ r      +  + V+Fe++++A++A +   +k +++
  KKY21419.1 1112 LIPPFISEEEIREFFSQFGKVAEVKMQR-----RTFRCSVRFEDHDSAQRAYD-SPKKLIDD 1167
                  57*******************9999999.....5999**************99.66666665 PP

>> PWI  PWI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   5.4e-08   6.9e-05      14      63 ..     843     894 ..     838     903 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 5.4e-08
         PWI  14 llgfeDdvvieyvlnlLeeekeldpkklqi...nltgfLekeaekFvkeLWel 63 
                 l +++ dv+ +yvl+lL + +e+d+k ++    nl +fL++++++Fv++ +  
  KKY21419.1 843 LSDADSDVLGDYVLALLTS-DEPDEKIMTScleNLDDFLKENTKQFVADVFAK 894
                 678899***********65.6899999987777***************99875 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   3.4e-08   4.3e-05      13      69 ..    1117    1170 ..    1112    1185 .. 0.86
   2 ?   -3.4   2.2       7.7   9.9e+03      45      73 ..    1211    1240 ..    1198    1272 .. 0.56

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 3.4e-08
                  --HHHHHHHCHCCS-ECEEEE-TTSSEEEEEESSHHHHHHHHHHHHHC-B-CCTSSE CS
       RRM_3   13 lsredikellsklgevayvdyekgdkegevrFkedeeakkalekateaklkikdaev 69  
                  +s e+i+e++s++g+va v +++    ++vrF+++++a++a ++ ++    i+d ++
  KKY21419.1 1117 ISEEEIREFFSQFGKVAEVKMQRRTFRCSVRFEDHDSAQRAYDSPKKL---IDDSSI 1170
                  5789**************************************998877...666555 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.7
                  SSHHH.HHHHHHHHHHC-B-CCTSSEEEEE CS
       RRM_3   45 kedee.akkalekateaklkikdaevtlel 73  
                   +++  a++a+e+++++ +++++a  +l++
  KKY21419.1 1211 SQQQLiAQQAFEERMAKVKENQEARRQLKV 1240
                  444435777777777774444444443333 PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   2.6     1e-07   0.00013       4      27 .]    1038    1061 ..    1036    1061 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1e-07
                  HCBCHHHHHS--TTGGG-SSBSCS CS
     zf-CCCH    4 elCrffmrtGyCkyGdrCkFaHgq 27  
                  e+C  +   G+C+yG++C+F Hg+
  KKY21419.1 1038 ERCLEYDTKGFCSYGNACPFKHGE 1061
                  89********************96 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   2.2e-07   0.00028       7     114 .]      27     160 ..      21     160 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.2e-07
                 STTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEE..................................EEEEECGGCSSHHHHHHHHHHHH CS
    MMR_HSR1   7 rpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgke..................................ielvDtpGliegaseekglgkaf 70 
                 +   GKStL  +l+++   i ++k+g  r + +++ + +  +                                  ++l+D pG ++       ++ ++
  KKY21419.1  27 HVDHGKSTLTDSLVQRaGIISAAKAGEARFTDTRQDEQD--RgitikstaislyanlqdeedikdipqkvdgneflVNLIDSPGHVD-------FSSEV 116
                 5678***********843466788888888877755422..13455566677777778888899999999999999********665.......66666 PP

                 HHHHC.TSEEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  71 lalee.adlillvvdaseeklkpldeeleelleeakkplilvlnk 114
                  a  + +d +l+vvd+ e+   + +  l + l+e+ kp ++++nk
  KKY21419.1 117 TAALRvTDGALVVVDCVEGVCVQTETVLRQALSERIKP-VVIINK 160
                 6666647********99443333334444444444455.556665 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.1   6.2e-05     0.079       6      19 .]    1046    1059 ..    1045    1059 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.2e-05
   zf_CCCH_4    6 qGtCkkGdkCrFaH 19  
                  +G C++G++C+F H
  KKY21419.1 1046 KGFCSYGNACPFKH 1059
                  6***********99 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1    0.0001      0.13      14      53 .]    1119    1158 ..    1115    1158 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0001
  Nup35_RRM_2   14 ielVlehFasfGeIvkhyvpkevsvmyvkfesekdaekAL 53  
                   +e+++e+F +fG++ +  + +++    v+fe+ ++a++A+
   KKY21419.1 1119 EEEIREFFSQFGKVAEVKMQRRTFRCSVRFEDHDSAQRAY 1158
                   689*****************99****************97 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  13.2     0.013        17       7      96 ..    1221    1313 ..    1215    1317 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.013
                    HHH-HHHHHHHHCCCTCCCHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT..S-TCCCCCCCHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N    7 irenpeavkeklkkRgedkadvdelle.ldekrrelqveleelqaerNelskeIgkakkkk..edaeeliaevkelkeelkaleaelkeleae 96  
                    + e +++vke++++R++ k + +ell+  ++++++l+v+l ++ a+rN+l+   g   + +     ++l  ++ +  +  kal ++l+ leae
    KKY21419.1 1221 FEERMAKVKENQEARRQLKVQQQELLAkHEAEMKSLRVKLAKAEAKRNRLNGDLGTTRDGEesSAQSALDTKSLQKEKVQKALREQLTLLEAE 1313
                    6677899*********8887777776516789************************9987653333444444444444457777888777776 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   9.9     0.012        16     108     205 ..    1216    1313 ..    1207    1336 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.012
     DUF4407  108 Idaelaeeqqeeakelkeqlaaa...ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelae 201 
                  I+++ +ee+ +++ke++e  ++     ++ la+ ea+ ++l+ ++++aea++++l+ ++    dg+ ++         +   +k++  +a++++l+ 
  KKY21419.1 1216 IAQQAFEERMAKVKENQEARRQLkvqQQELLAKHEAEMKSLRVKLAKAEAKRNRLNGDLGTTRDGEESSA---QSALDTKSLQKEKVQKALREQLTL 1309
                  7777788887777777766665566588888889999999999999999999999999988888766544...333444455566666666666666 PP

     DUF4407  202 lkak 205 
                  l+a+
  KKY21419.1 1310 LEAE 1313
                  6665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1222  (0.0681577); expected 358.6 (0.02)
Passed bias filter:                      597  (0.033298); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:00.49
# Mc/sec: 9313.85
//
Query:       KKY21420.1  [L=630]
Description: putative rna polymerase ii transcription factor related protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-27   94.4   6.5    3.3e-14   52.6   0.3    3.7  3  BSD       BSD domain
    1.8e-22   79.5   0.4    7.5e-22   77.5   0.0    2.3  2  PH_TFIIH  TFIIH p62 subunit, N-terminal domain
  ------ inclusion threshold ------
      0.046   12.8   0.0      0.081   12.0   0.0    1.3  1  CKAP2_C   Cytoskeleton-associated protein 2 C-terminus


Domain annotation for each model (and alignments):
>> BSD  BSD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.3   5.6e-18   3.3e-14       1      58 []     144     206 ..     142     206 .. 0.93
   2 !   42.5   0.4   8.2e-15   4.9e-11       3      58 .]     227     282 ..     225     282 .. 0.95
   3 ?    0.2   0.0      0.13     8e+02      40      54 ..     523     537 ..     520     550 .. 0.80

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 5.6e-18
         BSD   1 wdnkfkldkteeiaqsllkedpeLrklynel.......VPskvseeqFWsrYfyllrahaieeeq 58 
                 +d+ +k  +++ ++qsl+k +p+L+k+++e        +  +++ +qFWs++++llrahaie++q
  KKY21420.1 144 DDERLK--ADISLQQSLFKANPSLQKTFMESirtkpdtITPSQFTSQFWSTRVHLLRAHAIEKSQ 206
                 577788..******************************7777********************987 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 8.2e-15
         BSD   3 nkfkldkteeiaqsllkedpeLrklynelVPskvseeqFWsrYfyllrahaieeeq 58 
                 +++k+++  e++q++++++p ++++y+  VP+ ++e +FW r+f++++++++++e+
  KKY21420.1 227 DSVKMNISREQIQLMFNQHPLIKRVYDTEVPKPLDEREFWIRFFQSRLFKKLRGEK 282
                 678999**********************************************9985 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.13
         BSD  40 qFWsrYfyllrahai 54 
                 qFWs + + ++ +a+
  KKY21420.1 523 QFWSAFLSGKSDRAT 537
                 9***99876665555 PP

>> PH_TFIIH  TFIIH p62 subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.0   1.2e-25   7.5e-22       1      87 []       9     100 ..       9     100 .. 0.94
   2 ?   -2.2   0.1      0.91   5.4e+03      60      72 ..     475     488 ..     469     494 .. 0.71

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 1.2e-25
    PH_TFIIH   1 sykKkdGtLtlte..krleWtp..dasssapsvsiplseIknlqispagsaKvmLklvlkedks.eeesytFtFtngsearkerdavkdlLq 87 
                 +ykK++G+L +t+  k+leWtp   +++++p++++ +s+I+nlq++p +++KvmLk++ ++ ++ e+ +y+FtF ++s+ar e+d++k +L+
  KKY21420.1   9 TYKKQEGVLGITQdrKSLEWTPssGGQNGKPALVLTVSTITNLQQTPVNNPKVMLKVFSQAASQaEPIAYVFTFISPSNARGEADTIKAALS 100
                 59***********99*******86555667******************************99888***********************9985 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.91
    PH_TFIIH  60 s.eeesytFtFtng 72 
                 + +++s++F+  ++
  KKY21420.1 475 TqNATSHIFELLHQ 488
                 44899****99984 PP

>> CKAP2_C  Cytoskeleton-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.4e-05     0.081     146     232 ..     494     582 ..     490     597 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.4e-05
     CKAP2_C 146 EpitspieniiaiyEkailagAqpieelrhvladiltmKsqekvelgenveeakatkeeikevktedveaelekekeel..enkkerkv 232
                 Epi +++    +iy+++il+ A  +e l++  +  l  Ks   +e+   ve+ +   ++i+++  +  ++  +++++ +   n++ +k+
  KKY21420.1 494 EPIPGSLGLPTTIYDRVILTHATTTEFLHQFWSAFLSGKSDRATEISSLVESLNRAMDRIEAIAKDAESLREDEVRQRQklANERAKKT 582
                 666666666779***************************************************99954443333333331134433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1009  (0.0562775); expected 358.6 (0.02)
Passed bias filter:                      673  (0.037537); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.48
# Mc/sec: 3939.15
//
Query:       KKY21421.1  [L=755]
Description: putative polyadenylate-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-80  265.3   6.6    2.8e-21   75.1   0.3    5.3  5  RRM_1          RNA recognition motif. (a.k.a. RRM, RBD, or RN
    3.3e-30  104.1   0.7    1.4e-29  102.0   0.8    2.1  2  PABP           Poly-adenylate binding protein, unique domain
      4e-11   42.6   0.1     0.0027   17.3   0.0    5.1  5  RRM_5          RNA recognition motif. (a.k.a. RRM, RBD, or RN
    1.3e-05   25.2   2.4        7.9    6.7   0.0    5.4  4  RRM_7          RNA recognition motif
    0.00029   20.8   2.0        2.2    8.4   0.0    4.3  4  Nup35_RRM_2    Nup53/35/40-type RNA recognition motif
     0.0007   20.1   3.4       0.37   11.3   0.8    3.0  3  YflT           Heat induced stress protein YflT
  ------ inclusion threshold ------
       0.04   13.8   0.2        1.4    8.8   0.0    3.1  3  RRM_occluded   Occluded RNA-recognition motif
       0.63    9.8   4.1         13    5.5   0.0    3.5  3  OB_RNB         Ribonuclease B OB domain
        1.1    8.0   2.7        1.6    7.4   2.7    1.2  1  Presenilin     Presenilin
        1.5    9.3   5.7       0.61   10.6   2.7    1.9  2  OHCU_decarbox  OHCU decarboxylase
          2    6.6  11.0        3.1    6.0  11.0    1.3  1  CDC45          CDC45-like protein


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   4.5e-21   7.4e-18       1      69 [.      53     122 ..      53     123 .. 0.98
   2 !   63.3   0.2   8.3e-21   1.4e-17       1      68 [.     141     208 ..     141     209 .. 0.98
   3 !   75.1   0.3   1.7e-24   2.8e-21       1      69 [.     234     302 ..     234     303 .. 0.97
   4 !   33.0   0.0   2.5e-11     4e-08       1      35 [.     337     371 ..     337     377 .. 0.92
   5 !   29.1   0.1     4e-10   6.5e-07      34      69 ..     410     445 ..     401     446 .. 0.91

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 4.5e-21
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 l+Vg L p+vte +L elFs +G++ si+++rd  t++s g+a+V++++  d e+Ale+ln + ++gr++
  KKY21421.1  53 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDaVTRRSLGYAYVNYNNTADGERALEELNYTLIKGRPC 122
                 8******************************************************************987 PP

  == domain 2  score: 63.3 bits;  conditional E-value: 8.3e-21
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggre 68 
                 +f++nL + ++++ L++ F  fG i s+k+  de g+skg++fV +e+ e+A +A++++ng+ l++++
  KKY21421.1 141 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAASNAIKHVNGMLLNDKK 208
                 8****************************************************************997 PP

  == domain 3  score: 75.1 bits;  conditional E-value: 1.7e-24
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 ++V+n+  dvt++e +elF+kfG+i+s+++ rdetgks+gf+fV++ ++e A+kA+e ln k ++g +l
  KKY21421.1 234 VYVKNIQGDVTDDEFRELFEKFGEITSASIARDETGKSRGFGFVNYIDHEHAQKAVEDLNDKDFHGLNL 302
                 8***************************************************************99766 PP

  == domain 4  score: 33.0 bits;  conditional E-value: 2.5e-11
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETT CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdet 35 
                 l+V+nL+ d+++e+Lk++Fs fG i+s+k++rde+
  KKY21421.1 337 LYVKNLADDIDDEKLKDIFSAFGTITSAKVMRDER 371
                 8*******************************954 PP

  == domain 5  score: 29.1 bits;  conditional E-value: 4e-10
                 TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  34 etgkskgfafVeFeskedAekAlealngkklggrel 69 
                   gkskgf+fV F ++++A kA++++n k++++++l
  KKY21421.1 410 GFGKSKGFGFVCFSNPDEASKAVSEMNQKMVNSKPL 445
                 579*****************************9987 PP

>> PABP  Poly-adenylate binding protein, unique domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.6   5.9e+03      31      41 ..     195     205 ..     163     209 .. 0.75
   2 !  102.0   0.8   8.8e-33   1.4e-29       2      68 .]     657     723 ..     656     723 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.6
        PABP  31 lAgKITGMLLe 41 
                    ++ GMLL 
  KKY21421.1 195 AIKHVNGMLLN 205
                 33489999996 PP

  == domain 2  score: 102.0 bits;  conditional E-value: 8.8e-33
        PABP   2 selakaspeqqkqiLGerLypkiqklnpelAgKITGMLLemdnsellellesdeeLrekveeAievl 68 
                 s+l++a+p qqkq++Ge Lypkiq+++pelAgKITGMLLemdnsell+l+++d++Lr+kv+eA++v+
  KKY21421.1 657 SNLTQAQPAQQKQMIGETLYPKIQAQQPELAGKITGMLLEMDNSELLSLVDDDDALRAKVNEALTVY 723
                 6799************************************************************996 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.6e-06    0.0027       4     101 ..      27     129 ..      24     136 .. 0.82
   2 !   10.0   0.1    0.0003      0.49      28      96 ..     140     211 ..     130     228 .. 0.82
   3 !    5.1   0.0    0.0099        16      40     101 ..     244     309 ..     228     323 .. 0.72
   4 ?    0.9   0.0       0.2   3.2e+02      25      62 ..     333     369 ..     317     374 .. 0.77
   5 ?    1.7   0.0      0.11   1.8e+02      68     108 ..     419     459 ..     411     474 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.6e-06
       RRM_5   4 lvpsllasvaatgs.pgaagvaegsVllVyglepdkvnldklFnlfclYgnvervkflk.....tkketalvqmgdasaveravqHLnnaklfgkrlev 96 
                 + p++ +++ +t+   g + +++++ l V  l+p+ v+  +lF lf+  g+v+ +++ +        ++a v+  ++ + era++ Ln + + g++ ++
  KKY21421.1  27 VAPQTPGEGDQTPAsAGPNAQPHSASLYVGELDPS-VTEAMLFELFSSIGQVASIRVCRdavtrRSLGYAYVNYNNTADGERALEELNYTLIKGRPCRI 124
                 66777777777766567788888**********97.7889***************9976222114569***************************9999 PP

       RRM_5  97 alSKq 101
                 + S +
  KKY21421.1 125 MWSQR 129
                 99976 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0003
       RRM_5  28 VllVyglepdkvnldklFnlfclYgnvervkflk....tkketalvqmgdasaveravqHLnnaklfgkrlev 96 
                  +++ +l++  +  + l   f+ +gn+   k+ +    + k++ +v    a a+  a++H+n+  l +k++ v
  KKY21421.1 140 NVFIKNLDTA-IDNKALHDTFAAFGNILSCKVAQdefgNSKGYGFVHYETAEAASNAIKHVNGMLLNDKKVFV 211
                 4667888875.67789999*********9999653333789*************************9998755 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0099
       RRM_5  40 nldklFnlfclYgnvervkflktkk....etalvqmgdasaveravqHLnnaklfgkrlevalSKq 101
                 + d+   lf  +g++    + +       +  +v+  d  ++++av+ Ln++  +g +l v    +
  KKY21421.1 244 TDDEFRELFEKFGEITSASIARDETgksrGFGFVNYIDHEHAQKAVEDLNDKDFHGLNLYVGRAQK 309
                 5555566677777777777766554001145689999*******************9998865543 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.2
       RRM_5  25 egsVllVyglepdkvnldklFnlfclYgnvervkflkt 62 
                 +g  l V +l  d +  +kl  +f+ +g +   k+++ 
  KKY21421.1 333 QGVNLYVKNLA-DDIDDEKLKDIFSAFGTITSAKVMRD 369
                 55557788886.568999*****************986 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.11
       RRM_5  68 lvqmgdasaveravqHLnnaklfgkrlevalSKqqavseke 108
                 +v  ++  ++ +av+ +n + +  k+l val  ++ v +++
  KKY21421.1 419 FVCFSNPDEASKAVSEMNQKMVNSKPLYVALAQRKDVRKSQ 459
                 56666777788888888888888888888888888776544 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.16   2.6e+02       2      29 ..      51      78 ..      50     111 .. 0.77
   2 !    6.7   0.0    0.0049       7.9       4      63 ..     141     192 ..     138     211 .. 0.71
   3 ?    3.8   0.0     0.037        61       4      29 ..     234     259 ..     232     309 .. 0.81
   4 !    6.3   0.4    0.0063        10       5      33 ..     338     366 ..     335     462 .. 0.63

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.16
       RRM_7  2 rkvFvGGlPiDiteeelkatfkefgkvl 29
                  ++vG l + +te+ l + f++ g+v+
  KKY21421.1 51 ASLYVGELDPSVTEAMLFELFSSIGQVA 78
                56899*****************999875 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0049
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksv 63 
                 vF+  l + i++++l++tf +fg++l         k ++  +    kgy f+ +e+ ++ 
  KKY21421.1 141 VFIKNLDTAIDNKALHDTFAAFGNILSC-------KVAQD-EFGNSKGYGFVHYETAEAA 192
                 99999******************98631.......11111.2223457777777766655 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.037
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkvl 29 
                 v+v  +  D+t++e  + f++fg+++
  KKY21421.1 234 VYVKNIQGDVTDDEFRELFEKFGEIT 259
                 78888899***************986 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0063
       RRM_7   5 FvGGlPiDiteeelkatfkefgkvlvdwP 33 
                 +v  l  Di++e+lk+ f++fg+++    
  KKY21421.1 338 YVKNLADDIDDEKLKDIFSAFGTITSAKV 366
                 5667788***************9865433 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.28   4.6e+02      21      53 .]      71     109 ..      64     109 .. 0.75
   2 ?    2.5   0.1     0.087   1.4e+02      21      52 ..     159     195 ..     156     196 .. 0.88
   3 !    8.4   0.0    0.0013       2.2      18      53 .]     249     289 ..     244     289 .. 0.91
   4 ?    4.7   0.0     0.018        30      32      53 .]     411     432 ..     390     432 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.28
  Nup35_RRM_2  21 FasfGeIvkhyvp......kevsvmyvkfesekdaekAL 53 
                  F s+G++  + v       ++  ++yv + +  d e+AL
   KKY21421.1  71 FSSIGQVASIRVCrdavtrRSLGYAYVNYNNTADGERAL 109
                  5566666666666666655555689***********998 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.087
  Nup35_RRM_2  21 FasfGeIvkhyvp.....kevsvmyvkfesekdaekA 52 
                  Fa fG+I    v      +++ + +v +e+  +a  A
   KKY21421.1 159 FAAFGNILSCKVAqdefgNSKGYGFVHYETAEAASNA 195
                  899****9988777888899**********9999877 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0013
  Nup35_RRM_2  18 lehFasfGeIvkhyvp.....kevsvmyvkfesekdaekAL 53 
                  +e F+ fGeI+  ++      k++ + +v + +   a+kA+
   KKY21421.1 249 RELFEKFGEITSASIArdetgKSRGFGFVNYIDHEHAQKAV 289
                  778*********99988999999*****************8 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.018
  Nup35_RRM_2  32 vpkevsvmyvkfesekdaekAL 53 
                  ++k++ + +v+f ++++a kA+
   KKY21421.1 411 FGKSKGFGFVCFSNPDEASKAV 432
                  45788899*************8 PP

>> YflT  Heat induced stress protein YflT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       9.6   1.6e+04      57      74 ..     224     251 ..     213     260 .. 0.47
   2 !   11.3   0.8   0.00023      0.37       5      66 ..     280     345 ..     278     364 .. 0.82
   3 !    7.6   0.0    0.0033       5.4       4      47 ..     422     465 ..     420     484 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 9.6
        YflT  57 wdsiknlfrs..........kgdelrek 74 
                 ++++k+ f++          ++de re 
  KKY21421.1 224 FEEMKANFTNvyvkniqgdvTDDEFREL 251
                 4444444444333344333333444443 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00023
        YflT   5 eneeellsaieelkaeGyneddiyv..vakdkdrlerlaentdaetettse..eglwdsiknlfrs 66 
                  + e +++a+e+l++++++  ++yv  + k+ +r e+l+++++a  +++++  +g+   +knl   
  KKY21421.1 280 IDHEHAQKAVEDLNDKDFHGLNLYVgrAQKKHEREEELRKQYEAARVEKASkyQGVNLYVKNLADD 345
                 57899********************66678888999*******99999888898888878777655 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0033
        YflT   4 yeneeellsaieelkaeGyneddiyvvakdkdrlerlaentdae 47 
                 ++n +e+ +a++e++++ +n++ +yv+  +++++++ + ++ ++
  KKY21421.1 422 FSNPDEASKAVSEMNQKMVNSKPLYVALAQRKDVRKSQLEASIQ 465
                 7899***********************99999887766555555 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       6.3     1e+04      43      71 ..     184     212 ..     183     213 .. 0.81
   2 ?    8.8   0.0   0.00085       1.4       6      74 ..     236     308 ..     232     310 .. 0.90
   3 ?    0.9   0.0      0.26   4.2e+02       6      33 ..     339     365 ..     336     372 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6.3
  RRM_occluded  43 vefkdekiagkasLaLdgsefegkklrcG 71 
                   v ++ +++a  a+   +g+ +++kk+ +G
    KKY21421.1 184 VHYETAEAASNAIKHVNGMLLNDKKVFVG 212
                   77888888889999999999999888776 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00085
  RRM_occluded   6 llplsDtvnkariralveekegeikkivLvpdheG.....AivefkdekiagkasLaLdgsefegkklrcGtvk 74 
                   + ++   v++++ r+l+e+  gei+   +  d  G      +v + d+++a ka+  L+ ++f+g +l +G  +
    KKY21421.1 236 VKNIQGDVTDDEFRELFEKF-GEITSASIARDETGksrgfGFVNYIDHEHAQKAVEDLNDKDFHGLNLYVGRAQ 308
                   6689999*************.***999999999996665669***************************99875 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.26
  RRM_occluded   6 llplsDtvnkariralveekegeikkiv 33 
                   + +l+D + +++++++++   g i+   
    KKY21421.1 339 VKNLADDIDDEKLKDIFSAF-GTITSAK 365
                   669**************999.8887655 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.008        13       5      19 ..     176     191 ..     175     224 .. 0.83
   2 ?    1.6   0.1      0.14   2.2e+02       5      14 ..     269     278 ..     268     285 .. 0.84
   3 ?    1.6   0.2      0.14   2.2e+02       6      13 ..     413     420 ..     411     432 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.008
                 E-SSS-EEEEECT..T CS
      OB_RNB   5 ahkkGFGFlipde.gk 19 
                 +++kG+GF+  ++ + 
  KKY21421.1 176 GNSKGYGFVHYETaEA 191
                 689*******998555 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.14
                 E-SSS-EEEE CS
      OB_RNB   5 ahkkGFGFli 14 
                 + ++GFGF+ 
  KKY21421.1 269 GKSRGFGFVN 278
                 6789****96 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.14
                 -SSS-EEE CS
      OB_RNB   6 hkkGFGFl 13 
                  +kGFGF+
  KKY21421.1 413 KSKGFGFV 420
                 689****9 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   2.7   0.00097       1.6     270     319 ..     350     408 ..     289     513 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00097
  Presenilin 270 e............seeeseeesseaessaeesseekeseessesseeeeeeeeeeeesesee 319
                 +            s +  ++e++++++s++e+++++ese ++e++ e+ee++ee++   se+
  KKY21421.1 350 KlkdifsafgtitSAKVMRDERAPTPDSDKEKENKDESEDKEEAKGESEEQKEEKS---SEK 408
                 04444444444432222233333333322222222222222222211111111111...111 PP

>> OHCU_decarbox  OHCU decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.7   0.00038      0.61      30     133 ..     328     441 ..     304     472 .. 0.77
   2 ?   -3.3   0.1       6.8   1.1e+04      32      54 ..     681     703 ..     647     726 .. 0.45

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00038
                    S-SSHHHHHHHHHHHCCCS-HHHHHHHHCTS--TTSC...........CCHHTHCHHHHHHHCCCTTT........TCHHHHHHHHHHHHHHHHHH CS
  OHCU_decarbox  30 pfssyeaLiaavaealealseeelleilsaHPrLGek...........aakkkklsalsrkEqaglgl........aaseeeleeLaelnaeYeek 106
                    + s+y+ +   v++ ++++++e+l++i+sa+  +              +         s kE+++           ++see++ee +   + + + 
     KKY21421.1 328 KASKYQGVNLYVKNLADDIDDEKLKDIFSAFGTITSAkvmrderaptpD---------SDKEKENKDEsedkeeakGESEEQKEEKSSEKRGFGKS 414
                    6788999999999*********************998897666555553.........44444444333344444388999999999999999999 PP

                    HSS-----GCC--HHHHHHHHHHHTTS CS
  OHCU_decarbox 107 FGlrfvvfvngrsrkeIlaelerRlen 133
                     G+ fv f n  ++ + + e+++++ n
     KKY21421.1 415 KGFGFVCFSNPDEASKAVSEMNQKMVN 441
                    9***********999*******99988 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6.8
                    SSHHHHHHHHHHHCCCS-HHHHH CS
  OHCU_decarbox  32 ssyeaLiaavaealealseeell 54 
                    ++ ++L  +++  l +++++ell
     KKY21421.1 681 AQQPELAGKITGMLLEMDNSELL 703
                    23334444444444444444443 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  11.0    0.0019       3.1     108     216 ..     344     470 ..     283     486 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0019
       CDC45 108 DDgdieeeleeereayealeeeeesdeede...eeeeeddddeeeeeeeeedeedeeedeeeskkkrk.sksdeeee.............sddddersr 189
                 DD d +e+l++  +a+ ++++ +  ++e+    ++++e+++++e+e++ee ++e+ee++ee+s++kr    ++   +             s+  +e ++
  KKY21421.1 344 DDID-DEKLKDIFSAFGTITSAKVMRDERAptpDSDKEKENKDESEDKEEAKGESEEQKEEKSSEKRGfG-KS---KgfgfvcfsnpdeaSKAVSEMNQ 437
                 8888.89999999999999888888655446664554555544555555555555555555555555431.22...12334555432211111112222 PP

       CDC45 190 krrrse...........psakklrrqlkkerrkyeavl 216
                      +           +++k +r++++++  + +a+l
  KKY21421.1 438 -----KmvnskplyvalAQRKDVRKSQLEASIQARATL 470
                 .....122234555554344444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1560  (0.0870099); expected 358.6 (0.02)
Passed bias filter:                      695  (0.038764); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 5092.83
//
Query:       KKY21422.1  [L=215]
Description: hypothetical protein UCRPC4_g03685 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.086   12.9  14.6       0.17   11.9   4.8    2.7  2  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 
       0.18   12.0   0.4       0.85    9.8   0.1    2.0  2  Acyl-CoA_dh_C  Acetyl-CoA dehydrogenase C-terminal like
       0.47   10.8   6.6         25    5.3   2.6    3.0  3  DUF4854        Domain of unknown function (DUF4854)


Domain annotation for each model (and alignments):
>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   1.8    0.0024        14      86     133 ..      40      89 ..      35      96 .. 0.76
   2 ?   11.9   4.8   2.9e-05      0.17      55     120 ..     133     196 ..     103     204 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0024
  Baculo_PEP_C  86 eLtnlnsiltnLlssvtNinstLnnllqalnn..ldlgalsqeledaldt 133
                    L +  sil++L ss+   nst+++  ++l++  +d+++ s++ e+a+++
    KKY21422.1  40 TLASAVSILSTLKSSLDTANSTITSTHSSLAAgdIDTDSASSTYESAVSD 89 
                   56777799999999999999999999999987334666777766666665 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.9e-05
  Baculo_PEP_C  55 ksllaeldtrldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvtNinstLnnllqalnnldl 120
                   k+ l +l+t l+++l++Lt+al a+    +  Lt l s l+ Lls ++N+  +L  ++++l ++ +
    KKY21422.1 133 KRQLDDLTTILEEVLEELTSALEAIV--ADLGLTDLLSFLNPLLSALGNLLLALVPVVNDLLAIVE 196
                   44456666666666666666666665..34468888888888888888888888888887777654 PP

>> Acyl-CoA_dh_C  Acetyl-CoA dehydrogenase C-terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.15   8.7e+02      43      43 ..      73      73 ..      28     117 .. 0.53
   2 ?    9.8   0.1   0.00014      0.85      12      65 ..     130     184 ..     113     193 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.15
  Acyl-CoA_dh_C 43 d 43
                   d
     KKY21422.1 73 D 73
                   2 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00014
  Acyl-CoA_dh_C  12 a....alkelaaaleaalealqeateallakaakgdpeealaaavpyLelfGdvvigw 65 
                    +    +l +l + le++le+l +a+ea++a++      + l+  +p+L ++G+++++ 
     KKY21422.1 130 PmekrQLDDLTTILEEVLEELTSALEAIVADLG---LTDLLSFLNPLLSALGNLLLAL 184
                    13333799**********************776...48899999*********99985 PP

>> DUF4854  Domain of unknown function (DUF4854)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.2     0.016        95      50      78 ..      42      70 ..      34      72 .. 0.79
   2 ?    5.3   2.6    0.0042        25      56      89 ..      66     102 ..      50     118 .. 0.54
   3 ?    4.0   0.1     0.011        64      48      77 ..     132     161 ..     122     164 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.016
     DUF4854 50 aaldalkealaesldsqastfeslakqlk 78
                a++ ++ ++l++sld  +st +s+ ++l+
  KKY21422.1 42 ASAVSILSTLKSSLDTANSTITSTHSSLA 70
                45556778999999999999999999886 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0042
     DUF4854  56 kealaes...ldsqastfeslakqlkkevkvenpivv 89 
                  + la++   +ds  st+es +++++++ ++  ++vv
  KKY21422.1  66 HSSLAAGdidTDSASSTYESAVSDIASAFSTAASSVV 102
                 4444442222666666666666666666666333332 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.011
     DUF4854  48 ddaaldalkealaesldsqastfeslakql 77 
                 ++ +ld l+ +l+e l++ +s++e ++++l
  KKY21422.1 132 EKRQLDDLTTILEEVLEELTSALEAIVADL 161
                 667899*****************9999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       871  (0.0485805); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 1395.83
//
Query:       KKY21423.1  [L=236]
Description: hypothetical protein UCRPC4_g03686 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 1486.91
//
Query:       KKY21424.1  [L=554]
Description: putative eh domain binding protein epsin 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-48  163.4   0.0      4e-48  162.6   0.0    1.5  1  ENTH      ENTH domain
    0.00016   21.3   0.8     0.0038   17.0   0.2    2.7  2  UIM       Ubiquitin interaction motif
    0.00022   20.4   0.0    0.00032   19.8   0.0    1.2  1  ANTH      ANTH domain
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.023   14.3   0.0    1.4  1  DUF4264   Protein of unknown function (DUF4264)


Domain annotation for each model (and alignments):
>> ENTH  ENTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.6   0.0   8.9e-52     4e-48       1     125 []      15     139 ..      15     139 .. 0.99

  Alignments for each domain:
  == domain 1  score: 162.6 bits;  conditional E-value: 8.9e-52
                 --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSH.HHHHHHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---B- CS
        ENTH   1 yseteskvreatnndpwGpsnkllteiarltysk.kelseiisvitkrLqnnkgkewrsvlKaLtlieYLlknGseqvidwlkenisiiktlsefkyid 98 
                 ys++++kvr+at+ndpwGp+++++teia +t+++ ++++ei+++++krL n+kgk+wr+vlK+L++++Y+l++Gse v++w+++n++iiktl+ef+yid
  KKY21424.1  15 YSSVQVKVRNATSNDPWGPTGTDMTEIAAMTFNNpSDFYEIMDMLDKRL-NDKGKNWRHVLKSLKVLDYCLHEGSELVVTWARKNVYIIKTLREFQYID 112
                 89*******************************99**************.************************************************* PP

                 TTS-B-HHHHHHHHHHHHHHHT-HHHH CS
        ENTH  99 eegkdeglniRkkakkiislledeerl 125
                 eeg+d g+n+R  ak+++sl+ de+rl
  KKY21424.1 113 EEGRDVGQNVRVSAKELTSLIMDEDRL 139
                 ************************987 PP

>> UIM  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.057   2.6e+02       1      16 [.     177     192 ..     177     193 .. 0.91
   2 !   17.0   0.2   8.5e-07    0.0038       1      16 [.     208     223 ..     208     223 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.057
         UIM   1 dEdedLqrAlalSlqE 16 
                 d+d ++++A + S  E
  KKY21424.1 177 DDDTEFRLAVEASKHE 192
                 7999*********999 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 8.5e-07
         UIM   1 dEdedLqrAlalSlqE 16 
                 ++d+dL++A++lS +E
  KKY21424.1 208 TDDDDLAKAIRLSKEE 223
                 69*************9 PP

>> ANTH  ANTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   7.1e-08   0.00032       2     108 ..      18     123 ..      17     129 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 7.1e-08
                 HHHHHHHHT-SSS---HHHHHHHHHHHCST.TS-HHHHHHHHHHHCTSS..SHHHHHHHHHHHHHHHHHS-CHHHHHHHHTT-----TT---TSHHHST CS
        ANTH   2 levavvKAtshdevPpkekhvreilvltss.rekvaalvwalsrrlklt.rnwvvalKaLilvHklLreGhpsveqellsarrrisellnlssfddsss 98 
                 ++v v+ Ats d   p    ++ei  +t + ++++ +++++l +rl+++ +nw  +lK+L ++   L eG++ v   +  +   i+ l +++      +
  KKY21424.1  18 VQVKVRNATSNDPWGPTGTDMTEIAAMTFNnPSDFYEIMDMLDKRLNDKgKNWRHVLKSLKVLDYCLHEGSELVVTWARKNVYIIKTLREFQYI---DE 113
                 578999*****99999999*********999***************98659*********************9997777777666666666652...34 PP

                 HHHHHHHHHH CS
        ANTH  99 kswdysafir 108
                 +++d+++++r
  KKY21424.1 114 EGRDVGQNVR 123
                 6777777766 PP

>> DUF4264  Protein of unknown function (DUF4264)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   5.1e-06     0.023       3      31 ..      39      67 ..      37      67 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.1e-06
     DUF4264  3 eliatkefeknddlYkvVDfLNktLKdkd 31
                + ia ++f++ +d+Y + D+L k L+dk+
  KKY21424.1 39 TEIAAMTFNNPSDFYEIMDMLDKRLNDKG 67
                679***********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       982  (0.0547716); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.48
# Mc/sec: 3461.04
//
Query:       KKY21425.1  [L=3200]
Description: putative fermentation associated protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.36u 0.37s 00:00:01.73 Elapsed: 00:00:00.57
# Mc/sec: 16956.51
//
Query:       KKY21426.1  [L=980]
Description: hypothetical protein UCRPC4_g03689 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-97  326.7   7.2    1.4e-97  326.4   7.2    1.1  1  Solute_trans_a  Organic solute transporter Ostalpha


Domain annotation for each model (and alignments):
>> Solute_trans_a  Organic solute transporter Ostalpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.4   7.2  7.9e-102   1.4e-97       2     265 .]      28     294 ..      27     294 .. 0.97

  Alignments for each domain:
  == domain 1  score: 326.4 bits;  conditional E-value: 7.9e-102
  Solute_trans_a   2 liiagvfallallislililqhlrhytkpseQrkiirIllmvpiyavsSllsllfpsaavylelvrdcYeafviysFfsllleylggeealikal 96 
                     +++agv al+a+l+sl++i+ +l++y+kp +Qr+++rIl+mvpiy+ sS+ s+++ +aa++l+++rd+Yeaf+iy+Ff+ll++++gge++li ++
      KKY21426.1  28 IVLAGVAALVATLLSLVSIWLQLKNYRKPLLQRYVVRILIMVPIYSASSWGSIMSIKAAFWLDPLRDIYEAFTIYTFFQLLINFIGGERSLIIMM 122
                     789******************************************************************************************** PP

  Solute_trans_a  97 erdekkk.llplnlclekvklt.lkflkrcklgvlQyvvvkpllaivslileslgvyce.sfspkfaylyltiiynvsvtlAlyalllfykalkk 188
                     +++++++ ++pl + l++v+++ +++++ +k+g+lQy+++kp+la++++i++++++y+e  + ++++yl++ i+ynvsvtl+ly+l++f++++++
      KKY21426.1 123 HGRRPVHhPWPLGH-LPPVDISdPHTFLAIKRGILQYAWLKPILAFATIIMKATHTYKEgYLGVDSGYLWTGILYNVSVTLSLYSLAMFWVCMHE 216
                     ***77555****87.899**999***********************************768********************************** PP

  Solute_trans_a 189 eLkpfkpvlKflciklvvfltfwQglvlsilvkvgviketkk.lsaediaagiqnllicvEMvlfailhlyaFpykeY 265
                     +Lkpf+p++Kflcikl++f+++wQg++lsi++++g+i+++   +sa+++aa+iq++lic+EM++fa+ h+yaF++++Y
      KKY21426.1 217 DLKPFRPMPKFLCIKLIIFASYWQGFLLSIIQWLGAIPNDVPgYSADNLAAAIQDALICFEMPIFAMSHWYAFSWHDY 294
                     ***********************************99997669*********************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (980 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.52
# Mc/sec: 5684.78
//
Query:       KKY21427.1  [L=114]
Description: hypothetical protein UCRPC4_g03690 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-31  108.5   0.9    1.8e-31  108.1   0.9    1.2  1  Pcc1      Transcription factor Pcc1


Domain annotation for each model (and alignments):
>> Pcc1  Transcription factor Pcc1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.1   0.9     1e-35   1.8e-31       3      74 .]      13     103 ..      11     103 .. 0.93

  Alignments for each domain:
  == domain 1  score: 108.1 bits;  conditional E-value: 1e-35
                 EEEEE-SSHHHHHHHHHHHHHHCHC-TTECEEEEEEETT....................EEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHH CS
        Pcc1   3 tisvpfpterlAsialrtLqvDkelsplavkrslslegn....................vLqveykAttnrmLRvavngfleslglvletme 74 
                  i++p+p+erlAs+alrtL+vD+elspl v+r+++l+++                    vL++eykAttnrmLRvavngf+esl++vl++me
  KKY21427.1  13 IIDLPLPSERLASAALRTLEVDAELSPL-VRRTFTLAAQdisdreshsddnihsesaktVLRTEYKATTNRMLRVAVNGFMESLSVVLGVME 103
                 599*************************.*******77777777888888888888888********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 814.61
//
Query:       KKY21428.1  [L=653]
Description: putative protein-tyrosine phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-42  145.3   0.0      3e-40  137.9   0.0    2.5  2  DSPn           Dual specificity protein phosphatase, N-termin
    2.3e-16   59.8   0.1    5.7e-16   58.5   0.0    1.6  2  DSPc           Dual specificity phosphatase, catalytic domain
    1.4e-05   24.8   0.0    2.6e-05   23.9   0.0    1.3  1  Y_phosphatase  Protein-tyrosine phosphatase
  ------ inclusion threshold ------
       0.23   11.1   0.1       0.44   10.2   0.1    1.4  1  CDKN3          Cyclin-dependent kinase inhibitor 3 (CDKN3)


Domain annotation for each model (and alignments):
>> DSPn  Dual specificity protein phosphatase, N-terminal half
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.9   0.0   6.6e-44     3e-40       1     141 []      14     184 ..      14     184 .. 0.94
   2 !    4.7   0.0    0.0087        39      82     107 ..     337     362 ..     299     370 .. 0.77

  Alignments for each domain:
  == domain 1  score: 137.9 bits;  conditional E-value: 6.6e-44
        DSPn   1 eiikdrLyfatlkkkpketen...............................vhyfsiddelvYenFyaDFGPlnlaqlyrfcvkvnkkLkskelskkk 68 
                 e ikdrLy+a+++++p+e++                                 +yf+idd+l Y+ F+aDFGPl++++lyrf+v+ +++L ++++s+++
  KKY21428.1  14 EYIKDRLYLASYTQPPNESTPfpypvetkrsphkgssklqhgpvptnvvrpaPVYFTIDDTLLYNAFHADFGPLHIGHLYRFAVHFHEILGDPANSDRA 112
                 57999****99998666543367888899999999999999999999999999********************************************** PP

        DSPn  69 ivhytsadekkranaafLigaYavivlklspeealkplasqekppllpFrDaslgectyeltlldclkglekA 141
                 +v+ ++ad ++ranaa+Li++Y+v+++++ p+ al+p+a++ +pp++pFrDa+++++++ l+++d+++g++kA
  KKY21428.1 113 VVFWSRADARSRANAACLIACYMVLIQSWPPHLALAPIAQA-DPPYMPFRDAGYSQADFVLNIQDVVYGVWKA 184
                 ****************************************6.9*****************************8 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0087
        DSPn  82 naafLigaYavivlklspeealkpla 107
                 ++ +LigaY++  ++++++e+++ ++
  KKY21428.1 337 RTGCLIGAYLIYRHGFTANEIIAFMR 362
                 5679****************998776 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.5   6.6e+03      88      99 ..     128     139 ..     124     146 .. 0.82
   2 !   58.5   0.0   1.3e-19   5.7e-16      33     127 ..     280     377 ..     251     383 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHH CS
        DSPc  88 atliiaYlmktk 99 
                 a+li++Y+   +
  KKY21428.1 128 ACLIACYMVLIQ 139
                 9******97655 PP

  == domain 2  score: 58.5 bits;  conditional E-value: 1.3e-19
                 ECCTTTTSEEEEEC.CESSTTSCCGGGHHHHHHHHHHH...HHTT-EEEEEESSSSSHHHHHHHHHHHHHHTSCHHHHHHHHHHHSTT-SSTHHHHHHH CS
        DSPc  33 nalkkseieklrip.vedehetkiskyleeavefidka...kqkgkkvlVHCqaGisRSatliiaYlmktknlslneayeflkerrpaispnagfirqL 127
                  +++ + ++ l+i  ++   e+ +++ l+ + +fi+ a    +k+k ++VHC+aG+ R+++li aYl++++++++ne + f++  rp ++    ++++L
  KKY21428.1 280 ELYCPTYFTALDIThIDMIFEDGTCPPLSLVRKFIRLAhdmISKRKGIAVHCKAGLGRTGCLIGAYLIYRHGFTANEIIAFMRFMRPGMVVG-PQQHWL 377
                 345566677778885666889999999999999998554449********************************************999887.555555 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   5.8e-09   2.6e-05     154     225 ..     312     374 ..     299     379 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 5.8e-09
                    HHHHHHHHHHHHHSTTSS-EEEECSSSSHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHTTSTTSS-SHHH CS
  Y_phosphatase 154 sllklirkvekskeaksgpvvVhCsaGvgRtgtfvaldillqqleaeeevdvlqivkelrkqRpgmvqtleq 225
                    ++++l +++     +k++ + VhC+aG gRtg+++ + +++++  +       +i+  +r +Rpgmv   +q
     KKY21428.1 312 KFIRLAHDMI----SKRKGIAVHCKAGLGRTGCLIGAYLIYRHGFT-----ANEIIAFMRFMRPGMVVGPQQ 374
                    3444444444....5559******************9998876555.....788999999999999977766 PP

>> CDKN3  Cyclin-dependent kinase inhibitor 3 (CDKN3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   9.9e-05      0.44     102     155 ..     292     347 ..     275     356 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9.9e-05
                 EEEE----TTS---HHHHHHHHHHHHHHHHTT--EE.EE-SSSSSHH.HHHHHHHH CS
       CDKN3 102 vthhhpiadggtpdiascleimeelatclknyrktl.ihcygglgrs.clvaacll 155
                 +th   i + gt    s +  +  la  +  +rk + +hc  glgr+ cl+ a l+
  KKY21428.1 292 ITHIDMIFEDGTCPPLSLVRKFIRLAHDMISKRKGIaVHCKAGLGRTgCLIGAYLI 347
                 78888887666655556666666788777777776439********7588777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.34s 00:00:01.03 Elapsed: 00:00:00.55
# Mc/sec: 3554.03
//
Query:       KKY21429.1  [L=497]
Description: putative hexose transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-79  265.3  30.2    1.2e-78  265.0  30.2    1.0  1  Sugar_tr         Sugar (and other) transporter
    2.4e-24   85.9  35.1      8e-20   71.1  13.4    2.1  2  MFS_1            Major Facilitator Superfamily
    4.6e-06   25.3   3.8    4.6e-06   25.3   3.8    1.7  2  TRI12            Fungal trichothecene efflux pump (TRI12)
     0.0051   17.3   2.1     0.0051   17.3   2.1    2.6  2  Phage_holin_3_2  Phage holin family 2


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.0  30.2   2.6e-82   1.2e-78       6     452 .]      29     468 ..      24     468 .. 0.95

  Alignments for each domain:
  == domain 1  score: 265.0 bits;  conditional E-value: 2.6e-82
                 HHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TG CS
    Sugar_tr   6 alggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvev 104
                 ++ +   gYd+ ++++   l+++   f+l+++++             + +  G+i+  +f+ +l+d++GRkk+ +i+++++ +g ++q aa+   ++ +
  KKY21429.1  29 VINSATLGYDSSMMNGLNILPAYTEYFHLNTATTGL---------NNAGMWMGEIFAVFFMKWLADYYGRKKAVVITCFICAVGVIIQSAAQ---NTAM 115
                 5677889***************99999999999755.........569999*****************************************...99** PP

                 GGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT- CS
    Sugar_tr 105 livgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekgk 203
                 +++gR++vG g+ l  + +P+++sE  p++ Rga+ +l+ ++  +G l+aa++++g++++++++ wr+   +q+vp++l +++l f+PESPr+l  +g+
  KKY21429.1 116 FVIGRMIVGAGALLSGGAAPVLVSECLPPARRGAVLGLFFSSFYIGSLLAAGVNYGTQYIDSTWCWRVSSIIQMVPSILGIMVLPFVPESPRWLTANGR 214
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH......HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HHHHHHHHH CS
    Sugar_tr 204 eeeakevlaklrgeedadrelaeekdsleaeqeee.kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks...llvtiivgv 298
                  eeake la     e+++ +  e+  ++  eq+ + ++   el+s+k +r r +i +   +++ l G+++i yy + +++++g++++   l +++i+++
  KKY21429.1 215 LEEAKEALAIFYSPEEVQVREREIELAITGEQSLRkSNAFMELFSTKANRHRSFILATFGVITELLGNFVISYYLTDMLNQAGITNTttqLKINVILSC 313
                 **********88888888888888888777766666889999999999***************************************9999******** PP

                 HHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH...HHHHTTSS.....CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHH CS
    Sugar_tr 299 vnfvatfvaiflvdrfGRRtllllGaagmaicfvilg.ivalllvaks..kaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavav 394
                 +  ++++++ f+ d +GRR +  +G+++++i+++++  + a  ++++s  ++  +++i++i+lf  ++++ ++p+  ++ +E+fp ++R++++a++ ++
  KKY21429.1 314 WCLIVSIIGSFMLDIIGRR-IQTMGSIMCCIVMLYIFgGLAKKYSEGSsnTSGIYGSIAAIFLFQGAYSFAITPMTSLYPTEIFPYKLRTAGIALSKFT 411
                 *******************.88888888888777777799999999999999999******************************************** PP

                 HHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 395 nwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                  + + +  s+ + ++++ +g +++++++a+ + +f+ +v+f+++etkg++le+i   f
  KKY21429.1 412 DVGSGLMASFAMSYAMSDLG-WKFYMINASWNFIFLAIVYFTYVETKGLELEDIASKF 468
                 ********************.********************************98765 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1  13.4   1.8e-23     8e-20      12     219 ..      39     275 ..      29     290 .. 0.74
   2 !   19.8  16.7   6.6e-08    0.0003       3     175 ..     273     456 ..     271     472 .. 0.83

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 1.8e-23
       MFS_1  12 rsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw.lllvlrvlqGlgagalfpaga 107
                 +s+ + +  l a++e ++++ ++ gl  ++   g ++a++++ +l+d +Gr++ ++++ ++ a+g +++    ++ + +++++r++ G+ga ++  a+ 
  KKY21429.1  39 SSMMNGLNILpAYTEYFHLNTATTGLNNAGMWMGEIFAVFFMKWLADYYGRKKAVVITCFICAVG-VIIQsA-AQNTaMFVIGRMIVGAGALLSGGAAP 135
                 444444444449*****************************************888888888888.566634.55555********************* PP

       MFS_1 108 aliadwfpkeergraigllsagfslGailgpllgg...llasslgWravfyilaivsllafvlfllllpeepperkrkspkeee............... 188
                 +l+++  p+ +rg ++gl+ ++f +G++l++++     ++ s + Wr++ +i  + s+l+++   +l ++++++r+  +  ++e               
  KKY21429.1 136 VLVSECLPPARRGAVLGLFFSSFYIGSLLAAGVNYgtqYIDSTWCWRVSSIIQMVPSILGIM---VLPFVPESPRWLTANGRLEeakealaifyspeev 231
                 ******************************999887778888888**************988...7777777777777777777779999999999988 PP

       MFS_1 189 ...............kgtgpaplvp........awkallkdpvlwillialllf 219
                                +      l++          ka +++ +++    a +++
  KKY21429.1 232 qvrereielaitgeqS------LRKsnafmelfSTKANRHRSFIL----ATFGV 275
                 8876666663333331......22233222222244444444333....22222 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 6.6e-08
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigl.lltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllll.fa..........sslw.l 87 
                 ++++   l+ ++++  l+  + ++ gi+ ++ +l + ++ +  +++ s++++++ d +Grr  ++   + + +   +++  +a          s+++  
  KKY21429.1 273 FGVITELLGNFVISYYLT-DMLNQAGITNTTTQLkINVILSCWCLIVSIIGSFMLDIIGRRIqTMGSIMCCIVML-YIFGgLAkkysegssntSGIYgS 369
                 678888899999999999.899999******99998888888899*****************6666666666666.55556644444666666778878 PP

       MFS_1  88 llvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpee 175
                 +++  ++qG+ + a++p+   + +++fp + r+ +i+l   +   + +++  + ++ +s lgW   ++i+a   ++++ ++++ ++e+
  KKY21429.1 370 IAAIFLFQGAYSFAITPMTSLYPTEIFPYKLRTAGIALSKFTDVGSGLMASFAMSYAMSDLGWK-FYMINASWNFIFLAIVYFTYVET 456
                 999999******************************9999888888888899999999*****9.89**********88877777665 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   3.8     1e-09   4.6e-06      87     225 ..      69     209 ..      57     226 .. 0.77
   2 ?   -2.3   0.6      0.24   1.1e+03     312     327 ..     311     326 ..     251     379 .. 0.57

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1e-09
       TRI12  87 wttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaag.pagasplfvgelm..snktkflgllivsipvvvtsgls 182
                   +g+  +++ m  l+d +gr+  v++t  +  vg i+  +a++   ++    ++g  a    ga+p++v e +  + +  +lgl+  s  +  + +++
  KKY21429.1  69 MWMGEIFAVFFMKWLADYYGRKKAVVITCFICAVGVIIQSAAQNTAMFVIGRMIVGAGALlSGGAAPVLVSECLppARRGAVLGLFFSSFYIGSLLAAG 167
                 458999**********************************9998888777777777665426789*******9844567889*******9998888888 PP

       TRI12 183 pylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaql 225
                   +g +  i+ +w w +   i +    + ++v+ + p s + l
  KKY21429.1 168 VNYGTQY-IDSTWCWRVSSIIQMVPSILGIMVLPFVPESPRWL 209
                 8888764.78888887766555555555556666667665554 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.24
       TRI12 312 fvcillissimgamnl 327
                 + c  li si+g++ l
  KKY21429.1 311 LSCWCLIVSIIGSFML 326
                 3344444455554444 PP

>> Phage_holin_3_2  Phage holin family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   2.1   1.1e-06    0.0051      13      66 ..      95     148 ..      90     163 .. 0.83
   2 ?   -1.1   0.6      0.62   2.8e+03      35      75 ..     328     368 ..     321     375 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.1e-06
  Phage_holin_3_2  13 viGalialGklLvseepitlrLfiGRvilGsavslvagvaLvqfpdlsplavvG 66 
                      +   + a+G ++ s  + t+  +iGR+i+G+++ l+ g+a v++ +  p a  G
       KKY21429.1  95 ITCFICAVGVIIQSAAQNTAMFVIGRMIVGAGALLSGGAAPVLVSECLPPARRG 148
                      3345679********************************999998877766544 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.62
  Phage_holin_3_2  35 fiGRvilGsavslvagvaLvqfpdlsplavvGigsalGiaG 75 
                      +iGR i   +  ++  v+L++f +l      G +   Gi G
       KKY21429.1 328 IIGRRIQTMGSIMCCIVMLYIFGGLAKKYSEGSSNTSGIYG 368
                      68999887777788889999999998887777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 3240.77
//
Query:       KKY21430.1  [L=294]
Description: putative cellulase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-13   51.0   0.3    4.9e-12   45.9   0.3    2.0  1  Cellulase  Cellulase (glycosyl hydrolase family 5)
  ------ inclusion threshold ------
       0.15   12.0   0.0       0.36   10.8   0.0    1.6  1  Imm51      Immunity protein 51
       0.15   11.9   0.0       0.27   11.1   0.0    1.3  1  Sec7_N     Guanine nucleotide exchange factor in Golgi transp


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.3   8.2e-16   4.9e-12      22     277 ..      10     256 ..       4     259 .. 0.73

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 8.2e-16
                 SHHHHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESSTTTCSSSSTTTTHHHHHHHHHHHHHHHHHHHTTTT CS
   Cellulase  22 ttkalidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildiHseegwltkadgnssedtaeeffkklwtqiAerykknd 120
                 ++ ++++++k+ g+n++Rl +++ e++  ++ y+ +++ + + e++ ++   ++  +il      ++l k+++ ++++t+           A+++   +
  KKY21430.1  10 SASDTMAKIKSLGMNVIRLTFAI-EMI--DQIYQNGAQDITIQEALTEALGTENGTIILK-----EMLSKNPSFTNQTTRL---------EANKW---P 88 
                 67899*****************8.555..4556666777777777788877777777773.....2333555555555522.........36999...9 PP

                 TTEEEESSSS--STTCT......CCTCHHHTTHHHHHHHHHHHHHHHHTTSSEEEEECHHHHT...............BHHHHHCTSGSSSSTTEEEEE CS
   Cellulase 121 evvifelmNEPhgnntg......aewtseeadevkayaeeaikaIRavgpnrliivegnswsg...............nldgavlndPndsqdnliysv 198
                 + v + + NE ++ +++      + w       + +    a+ aI +++p+ li+  g ++ +               nl+ ++ ++P   +d+l++++
  KKY21430.1  89 NFVSIGMRNELRDPEDNsatvepYDW-----PHWYNNMVSAAYAIHETNPDPLIFFSGLDFDTdlgpialgsslsntsNLTFNASSFP--FSDKLVFEL 180
                 9**********997666655555555.....899998999999*****************5555555555545554557788777799..579****** PP

                 EEETTTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTSSHHHHHHHHHHHHHHHHTTTEEEEEEE CS
   Cellulase 199 HfYgpsdfaqtefgkdltdktnlaqrledaakylvekgipviigEfGgsnadgdlakeeaekwldylkekgiswiyWsl 277
                 H+Y+    +  ++     d +    +  d+ ++ v++ +pv+++EfG  + +++  + +a+   ++l + + +w+ W l
  KKY21430.1 181 HNYDTDA-TSCQE--IYDDLYPNGYNALDLSNTTVKNHVPVVMTEFGFAQDNSTYLEPYASCLRKLLPKWKSGWTTWVL 256
                 ****444.44444..5567777778888999****************97777745555555557777777999999976 PP

>> Imm51  Immunity protein 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     6e-05      0.36      11      70 ..     176     233 ..     170     243 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6e-05
       Imm51  11 isvlLeleddkveeveerfeeegaegnGydWaalaeayleekapelleklefDpEagmFv 70 
                   ++L + d  +++ +e+ +  +++ nGy+  +l +  +++  p ++ ++ f  +++++ 
  KKY21430.1 176 LVFELHNYDTDATSCQEIYD--DLYPNGYNALDLSNTTVKNHVPVVMTEFGFAQDNSTYL 233
                 55666666666666667555..59********************************9995 PP

>> Sec7_N  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.5e-05      0.27      22      87 ..      17      81 ..       6      85 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.5e-05
      Sec7_N 22 kpkflslaersktfsLeLlesvlsnhgdvfrkhpellqllkqklcplLlknlsespsfpvferslr 87
                k k l+++++  tf++e++ ++++n  + ++ ++ l+++l ++    +lk +  s++++ +  ++r
  KKY21430.1 17 KIKSLGMNVIRLTFAIEMIDQIYQNGAQDITIQEALTEALGTENGTIILKEM-LSKNPSFTNQTTR 81
                467789**********************************999999999999.8888888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 1853.70
//
Query:       KKY21431.1  [L=181]
Description: putative c-8 sterol isomerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-76  254.6   0.0    5.9e-76  254.5   0.0    1.0  1  ERG2_Sigma1R  ERG2 and Sigma1 receptor like protein


Domain annotation for each model (and alignments):
>> ERG2_Sigma1R  ERG2 and Sigma1 receptor like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.5   0.0   3.3e-80   5.9e-76       2     177 ..       7     181 .]       6     181 .] 0.98

  Alignments for each domain:
  == domain 1  score: 254.5 bits;  conditional E-value: 3.3e-80
  ERG2_Sigma1R   2 llllllvalvylldklleknyifdpkelqelakkaiakhendtkavleeivkelkkeypdelinlleeeewvfnnaGgamGamlilhaSitEYlilF 98 
                   l+l++l+ l+y++d++l+++y+fdp++lqe++++ai+ h n+ + +l++i+++lk+ey+d+ + + e+e+w+fnnaGgamG+m+ilhaSi+EYli+F
    KKY21431.1   7 LILAVLAPLLYIIDSFLPTQYVFDPARLQEISRNAISIHGNNSEPLLRQITQDLKAEYGDA-VVDWEKEDWFFNNAGGAMGSMVILHASISEYLIFF 102
                   5789999****************************************************96.77888****************************** PP

  ERG2_Sigma1R  99 GtavgteGhtGrhladdyftiLkGeqlaakpgelekevYkpGdvhhlkrgeakqykmeegcfaLeyarGwipsmlpFgf 177
                   Gta++teGh+G+hladdyftiL Geq++a++g+l++++Y pG+++hlkrg+a qy+m+++cfaLe+a+Gwip+mlpFg+
    KKY21431.1 103 GTALQTEGHSGVHLADDYFTILVGEQHTAAAGDLTPTIYGPGQQNHLKRGDAIQYSMPKTCFALELAQGWIPAMLPFGM 181
                   *****************************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.49
# Mc/sec: 1120.65
//
Query:       KKY21432.1  [L=230]
Description: putative acid phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-11   44.1   0.2    4.3e-11   43.7   0.2    1.1  1  Metallophos      Calcineurin-like phosphoesterase
    1.1e-06   29.1   0.2    5.6e-06   26.8   0.1    2.0  2  Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
  ------ inclusion threshold ------
        0.1   13.2   0.0       0.29   11.7   0.0    1.8  2  PhoD_N           PhoD-like phosphatase, N-terminal domain


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.2   7.3e-15   4.3e-11       2     118 ..      55     226 ..      54     229 .. 0.88

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 7.3e-15
                  EEEEEESBTB....................TTCCTHHHHHHHHHHHH...HHHTTESEEEEEST..SSSSSHHHHHHHHHHHHHHHHTSEEEEEC-TT CS
  Metallophos   2 rilvigDlHl....................algggqlddllkllddl...lreekpdlvllaGD..lvdrgdlekellellaalvkypipvylllGNH 74 
                  + +v++D+++                    a++gg+l++++++++ +   +++  +    l GD  + ++++++  +++++ ++v++++p+++l+GNH
   KKY21432.1  55 SMAVLNDMGYtnaagtfkqlvrvanegaafAWHGGDLSYADDWYSGIlpcASDWPNQGSPLGGDmsVLYESNWDL-WQQWI-QKVSLKVPYMTLAGNH 150
                  5689******************************************97664445557777889999999999999.88884.44444699******** PP

                  S.............................CHHH.HHHHHHHHHHHHHHHHEHH....HCEEETSEEEEEETTEEEEE CS
  Metallophos  75 e.............................gfee.ellnkygylgifsepwrsd....aevfnnlplaslgsgslkvl 118
                  e                             +f++ +++ ++++++ +++ +r++    ++v+n+++++++g g  +++
   KKY21432.1 151 EascgefdgpgnvltayldddisngtaaaeNFTYySCPLSQRNFTAYQNRFRMPgpetGGVGNFWYSFDYGLG--HFV 226
                  ******************************9999999999999999988777778888*************99..665 PP

>> Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1   9.4e-10   5.6e-06      56      94 .]       5      44 ..       2      44 .. 0.88
   2 ?   -0.4   0.0       0.3   1.8e+03      36      65 ..     169     202 ..     124     207 .. 0.67

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 9.4e-10
  Pur_ac_phosph_N 56 yksgyshkatltgLepgttYyYrv.gddeggwSevysfkT 94
                     + s++ h ++++gL+ gt+YyY++ g+++++ S++ sf+T
       KKY21432.1  5 QCSQIFHDVQIDGLKSGTKYYYKIpGANGTTSSQILSFTT 44
                     678999******************6666669********9 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.3
  Pur_ac_phosph_N  36 ssdalestaeatsstyet....tnyksgyshkat 65 
                      ++d ++ ta a++ ty +    + + + y+++ +
       KKY21432.1 169 DDDISNGTAAAENFTYYScplsQRNFTAYQNRFR 202
                      3334667777777777666666555566666655 PP

>> PhoD_N  PhoD-like phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.9e-05      0.29      60      84 ..      12      38 ..       2      44 .. 0.75
   2 ?   -2.9   0.0       1.8   1.1e+04       4      13 ..      47      56 ..      46      80 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.9e-05
      PhoD_N 60 kvevtgLkpgqeyfYrfr.ags.essp 84
                 v+++gLk+g++y+Y++  a++ +ss+
  KKY21432.1 12 DVQIDGLKSGTKYYYKIPgANGtTSSQ 38
                6899************99766635555 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.8
      PhoD_N  4 asGDptadsv 13
                a+GDp++ s+
  KKY21432.1 47 AAGDPSEFSM 56
                6677766443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1568.10
//
Query:       KKY21433.1  [L=107]
Description: hypothetical protein UCRPC4_g03696 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.045   13.7   2.0      0.051   13.5   1.5    1.4  1  Mistic    Membrane-integrating protein Mistic


Domain annotation for each model (and alignments):
>> Mistic  Membrane-integrating protein Mistic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.5   2.8e-06     0.051       3      36 ..      27      59 ..      25      78 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.8e-06
                HHHHHHHHTTTHHHHHHHHH--SSS-SS-SS-SH CS
      Mistic  3 kklseAiDkmnegldafieLYNeseedkpliefe 36
                + l+eA+D +++g+d  ++  Nes +d +l+ f+
  KKY21433.1 27 EGLDEAVDDVDDGVDETVDDVNESADDVELV-FD 59
                679************************9987.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 700.21
//
Query:       KKY21434.1  [L=757]
Description: putative acetate regulatory dna binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-26   90.5   2.9    1.9e-25   89.4   2.9    1.5  1  Fungal_trans     Fungal specific transcription factor domain
  ------ inclusion threshold ------
      0.075   12.5   0.3       0.15   11.5   0.3    1.4  1  Inj_translocase  DNA/protein translocase of phage P22 injecto


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   2.9   2.1e-29   1.9e-25       1     266 [.      27     268 ..      27     276 .. 0.87

  Alignments for each domain:
  == domain 1  score: 89.4 bits;  conditional E-value: 2.1e-29
  Fungal_trans   1 ldrffsnfhpqfpilhkpsflpkt.........ssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfssps 88 
                   +++ff+ ++p+fpil++ sfl+++          +++++k ++a+  l++ + ++  + s + +++s      e+        +++     ++ s++
    KKY21434.1  27 INVFFQEWSPLFPILDHASFLKTYqdfladpesPQWQNRKHDIAQLYLVFDVASVSLRASTKLNGTS-----YEQ--------EWRRAM--QAMSSA 108
                   689***************************8888888888888888888888888888888888887.....333........777777..555666 PP

  Fungal_trans  89 sslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpL 185
                   +sl +l++  l++l  +  ++++ + rh+   v+++++l+Lh  +          l+ +e+esr+ ++w+ ++lD++ a+    p+ll++s+i+l++
    KKY21434.1 109 PSLMTLKCHILAQLLYLLKDEQKYFLRHRASGVTMCHQLSLHLSQDART------LPYAEKESRKVVFWSQYILDRFGASASDVPVLLRESDISLEM 199
                   66**********************************************9......****************************************** PP

  Fungal_trans 186 PcddddlwesddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlqseklswveeleraldnWr 266
                   P++   ++  ++  + ++        e+ ++++++l+ + +ilsk+++  l + ++  + +       +v  l++++d+W 
    KKY21434.1 200 PENNV-EEVGSSPVQGNQTK-----GESKVSNFLALIQITRILSKVLD-QLHPASTKFNLSIN-----NVSALTEEVDKWV 268
                   *9999.77777777766666.....6899*******************.55566666666655.....5888888888885 PP

>> Inj_translocase  DNA/protein translocase of phage P22 injectosome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   1.6e-05      0.15      24      67 ..     622     665 ..     606     675 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.6e-05
  Inj_translocase  24 glirdnnelarsGannlgLqaLsglkgiadiyqqdqqqqkqkaf 67 
                      gl+  nn    + +   +L++ +++ ++ di+q+ qqqq+++a 
       KKY21434.1 622 GLLDLNNSTWPNESWPAALTTNNSVVDLNDIHQAVQQQQQRQAQ 665
                      5666666666666667799999*************999998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.40s 00:00:01.08 Elapsed: 00:00:00.52
# Mc/sec: 4352.08
//
Query:       KKY21435.1  [L=202]
Description: putative gata-type sexual development transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-15   56.9   5.3    1.8e-15   56.2   5.3    1.4  1  GATA           GATA zinc finger
  ------ inclusion threshold ------
      0.019   14.9   0.1      0.031   14.3   0.1    1.3  1  Bcr-Abl_Oligo  Bcr-Abl oncoprotein oligomerisation domain
       0.15   12.2   0.5       0.27   11.4   0.5    1.4  1  Zn-ribbon_8    Zinc ribbon domain
       0.16   12.3   1.6       0.28   11.5   1.6    1.3  1  zinc_ribbon_9  zinc-ribbon


Domain annotation for each model (and alignments):
>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   5.3     4e-19   1.8e-15       1      34 [.     146     179 ..     146     181 .. 0.95

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 4e-19
        GATA   1 CsnCgttkTplWRrgpdgnksLCnaCGlyykkkg 34 
                 C++C+  +Tp+WRrgpdg+++LCnaCGl+y+k  
  KKY21435.1 146 CHSCNRAETPEWRRGPDGARTLCNACGLHYAKLT 179
                 *******************************965 PP

>> Bcr-Abl_Oligo  Bcr-Abl oncoprotein oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1     7e-06     0.031       4      69 ..      44     109 ..      42     113 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7e-06
  Bcr-Abl_Oligo   4 eferaWraefPeeevPkmeLdsvedieqeLerCkaslrrLekelneekfkviyLqtllaker.ksyD 69 
                    +f + +  +  +++  ++ Lds++ ++ e++   ++ +rL+  l + +  +i+ q +la er ++y 
     KKY21435.1  44 DFSKVFTQRLHQNQRSEISLDSLPSLQ-EVDDMVKHAHRLHDGLDRIRNSIIFQQQALADERsRAYQ 109
                    68888888888999999********95.788888899**********************99856665 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5   6.1e-05      0.27       7      38 ..     145     177 ..     145     179 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.1e-05
  Zn-ribbon_8   7 rCeeCghefe..vlqsisdapltaCPeCgsevrr 38 
                  rC++C+ + e  ++++  d + t C +Cg +  +
   KKY21435.1 145 RCHSCN-RAEtpEWRRGPDGARTLCNACGLHYAK 177
                  8*****.55558898877**9999****976665 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.6   6.3e-05      0.28       5      28 ..     146     172 ..     146     174 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.3e-05
  zinc_ribbon_9   5 ChqCdrfVsvspdedsd...vlCPhCg 28 
                    Ch+C+r+ +++++  +d   +lC+ Cg
     KKY21435.1 146 CHSCNRAETPEWRRGPDgarTLCNACG 172
                    *************888887669****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.36s 00:00:00.92 Elapsed: 00:00:00.53
# Mc/sec: 1142.81
//
Query:       KKY21436.1  [L=521]
Description: putative set domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 3407.30
//
Query:       KKY21437.1  [L=507]
Description: putative mis12-mtw1 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-41  141.4   0.5    3.5e-40  138.2   0.5    2.2  1  MIS13     Mis12-Mtw1 protein family


Domain annotation for each model (and alignments):
>> MIS13  Mis12-Mtw1 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.2   0.5   1.9e-44   3.5e-40       2     296 ..     198     503 ..     197     507 .] 0.77

  Alignments for each domain:
  == domain 1  score: 138.2 bits;  conditional E-value: 1.9e-44
                 XXXX.....XXXX..XXXXXXXXXXXXXXXXXXXXX.......XXXXXXXC..CHHCCTSXTT.STCHHHHHHHHHHHHHHHHHHHC.......HTTT. CS
       MIS13   2 pLsdteiilqeke..kkerarnkRrsslsqrGRRlSsLgtgftiaspHkdvpesefykhiens.laeplrlrqLlnWclkralekleekakseskkeet 97 
                 p  dt++i+++k      +++ +Rrssl +rGRR+           pH++v  ++fykhie + l+ep+r+rqLl+Wc  ra+ ++        + +e 
  KKY21437.1 198 PFADTPVIRRNKAmrDGRASKGERRSSLGMRGRRAT---------LPHNEVKIEDFYKHIESEgLPEPRRMRQLLTWCATRAMGEIS-------TGKEF 280
                 7789*****99998777778999***********99.........8*****************************************.......9999* PP

                 TT.HHHCHHHHHCCHCCHHHHCHHCHHCCHHHHHHCHHHTHCSTTGCCCSXXX....XXSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH.... CS
       MIS13  98 eesdakkiarvIikeflrdlkkgkisidWeareeeeeedendteltklFedndkkklpnaknieneenlailkekikalknEikeWaklladskd.... 192
                 e+++a+  arvI++e+l+dl ++++ +dW++re+ + ++     l k          pn+kn++ne+++ +l+e+ik++       ++++ d       
  KKY21437.1 281 EDQSARLAARVIQEELLKDLSDKSEMSDWFNREDIPPPK--APVLVK----------PNPKNLQNEAKILELEEQIKRFVLGTLGDEVSATDRATrlka 367
                 *********************************887777..667777..........********************9876554444444332221222 PP

                 ....................HH.HHHHHHTT-----------S--...............................HHHHHHHHHHHHHHHHHHHHHHH CS
       MIS13 193 .................pdkeiqkekklvdseakidsdtqepdta...............................qrilsdnanveskletkvDeLqd 243
                                  p                  s+      a                                 +  + +++ s+l   vD  +d
  KKY21437.1 368 ekvslealkkppaitpmP------------------SS------AenpaassidtsllspsdleiqqlltstpttsTIVSARLNSIISSLGPTVDVFAD 442
                 333333333332222221..................33......22333336666666777777777778888775555678999************** PP

                 HHHHHHHHHHHHHHHHHHHHHCTSTTTSSXXXXXXXXXXXXX..........XXXXXXXXX CS
       MIS13 244 svhkLdsaskalnelstqklqklsrllakrskkekkssesrkks........tkkLlrgls 296
                  vhk+ + + a+ +++t  l+     l++r ++ +++    ++            +lrgls
  KKY21437.1 443 GVHKIGQYRDAAERVATRALNICAKKLEERDRASLRQTRGDEIEsqkrgresMGGVLRGLS 503
                 ********************76666666666666666555444466666776667788777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 3083.96
//
Query:       KKY21438.1  [L=779]
Description: putative oligopeptide transporter 6 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-129  433.4  44.8   1.8e-129  433.2  44.8    1.0  1  OPT        OPT oligopeptide transporter protein


Domain annotation for each model (and alignments):
>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.2  44.8    1e-133  1.8e-129       2     614 ..      95     744 ..      94     746 .. 0.95

  Alignments for each domain:
  == domain 1  score: 433.2 bits;  conditional E-value: 1e-133
         OPT   2 lTlRavvlGillgvlgsavnmyfglrtglvsissipaallafplgkalarilpk.........lslnpgpftikEnvliqtmasaaatlalatglivvi 91 
                 lT+R +vl++ ++v+g+ +  ++++++  +s +s  ++ll++++g ++a++lp          +slnpg+++ kE++li+++   +  +a++ g ++++
  KKY21438.1  95 LTFRFWVLSTFWVVVGCGISSFYYFKPYYISLTSYAVQLLSWGMGDLMAKWLPThefntfgckWSLNPGKWNAKEHALIVVAYWGSCYTAYGLGPLSAL 193
                 8***********************************************************************************999999********* PP

         OPT  92 palelygqsagfgylillslsvqllGvgfagplRkflvypeklifPsglataellkalhkpegeeksrlkfflivflgsfvwglfplylfpalssfswl 190
                 +++  yg+++++g++il+++ +q++G+gfag++R +lv+p+k  +P  l+ + l++a+hk+   +k +lkff++v +++f++++fp ++fp+l s+  +
  KKY21438.1 194 ELY--YGKKVNAGWAILFLITTQMIGYGFAGLFRDILVRPPKIYYPGVLPNVSLFNAMHKNPSVTKNSLKFFWCVAIATFIYEWFPSLIFPMLGSLPLI 290
                 ***..********************************************************************************************** PP

         OPT 191 twiapknvvlanlf....glgllpltfdwnviaayiGsglivplwvavnmliGavlswgiliPllyysngwypaylp.............ydvteilde 272
                 + +   n ++ +l     g+g+l +++dwn+ a +  s+l +plw+++++++Ga+++++++ P++y++n + ++ +p             y+++++l+ 
  KKY21438.1 291 CYMGHGNGIAYILGsgfnGVGMLDISLDWNYAAFF--SPLYTPLWANAHQIAGAIFACWLVYPIMYFTNTLSAKTFPimssgtfdalgdtYNISRVLNA 387
                 *******9888888999****************64..8************************************************************* PP

         OPT 273 dgvldyekyigyglmllaalvallylvqfaaitllivhtilkhgkdikaalksa.rsprteeddrhrrlmrkykdvpmwwylallvlslvigiivveal 370
                 d +l++++  +y+ + +a+++a++ +  faa t+++v+++l++gk+ +  +++a +++r+  dd+  +lm+  + vp wwy+all++  ++++++++  
  KKY21438.1 388 DYTLNKAAMDAYSKPHWATSYAMYFFWGFAASTAAMVYSMLWYGKSSWIIIREAwKNRRDDFDDPYIKLMEHLPRVPHWWYAALLAICTALSLATIYGG 486
                 ****************************************************99888999*************************************** PP

         OPT 371 ftqlpvwglllalllafllaivsaiiaGltglnpvsgigkltqlifgallpgrpvanlvfgavvyaaaaqagdfmqDLKtGhllkasPraqfvaqliGt 469
                   +lp+wg+l++ +++ +++++++i+ G+ ++  ++g++ l+++i+g l+pg+pva l+   ++ +++ q  ++++D K G+++k++ r++f++q++Gt
  KKY21438.1 487 GFELPWWGFLIICAVSCVFTFPNGILWGVANM--QVGMAFLSEVIAGSLFPGKPVAVLTCLVYGRQILEQNLNLISDYKFGFYMKIPEREMFWGQVYGT 583
                 ********************************..***************************************************************** PP

         OPT 470 lvgavvniavlkllvkaygdict..adasnaftaPqakvfaavavl..lvggk......kglpwafl..lgavapfilllllkkfpkkstarkl.plpl 555
                 ++g +vn+++++++++++g      +  s ++ a   k f++++vl  ++g+k      ++ +w ++  l++v++++l++ l+ +++  ++ +  +++l
  KKY21438.1 584 FLGPFVNYGMMRFIIDNIGKDKLtgVVSSPSWNALKTKNFYSLSVLwgVLGPKeffgpnSQYNWIYYgfLIGVIAVCLAYGLHLWKPHWQIEERfNPVL 682
                 ******************9876679999*******************888888****996666666666666888888888888665555544469999 PP

         OPT 556 afavgfylppsl...sialligglianlwlkrrdaewakkynyvlaaGLiaGealmgviiaf 614
                 +f +g + p++     ++ ++++++++ +  r++++w++kyny+l+ GL++G++lm  ++ f
  KKY21438.1 683 FFYGGTLFPVYQtanLFTSAVLCFVFMGYMLRYRPAWFRKYNYLLGVGLDCGTQLMQTVMVF 744
                 99877777777647666999************************************988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (779 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.35s 00:00:01.02 Elapsed: 00:00:00.52
# Mc/sec: 4523.72
//
Query:       KKY21439.1  [L=228]
Description: hypothetical protein UCRPC4_g03702 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-05   25.4   0.0      0.087   12.9   0.0    2.2  2  ABM       Antibiotic biosynthesis monooxygenase
  ------ inclusion threshold ------
       0.16   12.3   0.1         23    5.3   0.0    2.3  2  DUF4937   Domain of unknown function (DUF4937


Domain annotation for each model (and alignments):
>> ABM  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   5.7e-05      0.51      21      75 ..      28      81 ..      26      84 .. 0.88
   2 !   12.9   0.0   9.7e-06     0.087      17      74 ..     142     201 ..     134     204 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.7e-05
                HHHHHHHHHHHTSTTEEEEEEEEEETSTTEEEEEEEESSHHHHHHHHTSHHHHHH CS
         ABM 21 afaeavesllaeepGclgyellrstedpdevvvieeWeseaaleahlksphfkaa 75
                a+++ +e+l  +++G+ + ++  + e+p+   ++  W+s+++++ +++ ++++ +
  KKY21439.1 28 ALKDSLEAL-GQVEGFQRCYWGIEVENPNVLDLFIDWDSIESHKKFQEDQSYRPF 81
                677888888.8**********************************9998888766 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 9.7e-06
                 HHHHHHHHHHHHHHHTSTTEEEEEEEE...EETSTTEEEEEEEESSHHHHHHHHTSHHHHH CS
         ABM  17 afldafaeavesllaeepGclgyellr...stedpdevvvieeWeseaaleahlksphfka 74 
                  fl  +++a+e+  +   G  + e+++    ++d   ++ +  W s++a+  ++++++fk+
  KKY21439.1 142 RFLGILESAAEGY-KGSAGGWSDEVVKipgTEDDGKLFLTVVGWTSIEAHMKYRDTQAFKD 201
                 5666777778866.78888889999987666888888**********************97 PP

>> DUF4937  Domain of unknown function (DUF4937
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0026        23      25      66 ..      34      75 ..      27      80 .. 0.90
   2 ?    4.7   0.0    0.0041        37      29      43 ..     150     164 ..     129     177 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0026
     DUF4937 25 aalkgveGFigqlGGWekeeeaeavilalWedraaydeFmae 66
                +al +veGF + + G e e+++   ++  W++ ++ ++F ++
  KKY21439.1 34 EALGQVEGFQRCYWGIEVENPNVLDLFIDWDSIESHKKFQED 75
                78999******************************9999765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0041
     DUF4937  29 gveGFigqlGGWeke 43 
                   eG+ g +GGW++e
  KKY21439.1 150 AAEGYKGSAGGWSDE 164
                 579*********964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.44s 00:00:00.94 Elapsed: 00:00:00.87
# Mc/sec: 791.32
//
Query:       KKY21440.1  [L=611]
Description: putative nuclear distribution protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-47  160.4   8.8    5.9e-47  160.4   8.8    3.7  1  NUDE_C          NUDE protein, C-terminal conserved region
     0.0048   17.0  34.9       0.69   10.0   8.8    4.2  4  TPR_MLP1_2      TPR/MLP1/MLP2-like protein
  ------ inclusion threshold ------
      0.016   15.6   8.3      0.016   15.6   8.3    4.9  4  ZapB            Cell division protein ZapB
      0.034   14.5   3.3      0.067   13.5   3.3    1.4  1  PSII_Pbs27      Photosystem II Pbs27
      0.036   14.4  26.5      0.034   14.5   3.7    4.4  4  CLZ             C-terminal leucine zipper domain of cyclic nu
       0.06   13.1   0.2       0.13   12.0   0.2    1.5  1  Dimer_Tnp_Tn5   Transposase Tn5 dimerisation domain
       0.09   13.1   0.4       0.09   13.1   0.4    2.5  2  Flagellin_C     Bacterial flagellin C-terminal helical region
        0.1   11.8  23.9      0.067   12.4  11.9    3.8  4  DUF2046         Uncharacterized conserved protein H4 (DUF2046
       0.19   10.8  26.4       0.11   11.6  14.8    3.0  3  CCDC144C        CCDC144C protein coiled-coil region
       0.21   12.0  27.5       0.48   10.8  15.4    3.3  3  Fez1            Fez1
       0.27   11.4  34.8       0.24   11.5  19.3    3.5  3  Tropomyosin_1   Tropomyosin like
       0.44    8.7  25.2       0.12   10.6  15.9    2.0  2  FPP             Filament-like plant protein, long coiled-coil
        0.5   10.1  33.8       0.65    9.8  25.0    2.8  3  ERM             Ezrin/radixin/moesin family
        1.1    9.7  10.5       0.34   11.3   4.8    2.5  2  Chibby          Chibby family
        1.5    6.3  22.5        2.2    5.7  22.5    1.1  1  DUF3584         Protein of unknown function (DUF3584)
        1.5    8.3  31.4        3.4    7.2  28.7    2.7  2  Filament        Intermediate filament protein
        1.8    7.7  19.8       0.23   10.6   4.7    2.1  2  Tho2            Transcription factor/nuclear export subunit p
        3.7    7.4   7.4        5.4    6.9   0.7    3.0  3  DASH_Duo1       DASH complex subunit Duo1
        4.2    6.1  19.2        0.3    9.9   9.7    2.2  2  Fmp27_WPPW      RNA pol II promoter Fmp27 protein domain
        8.3    5.7  11.0       0.28   10.5   3.0    2.2  2  FAM76           FAM76 protein
        9.3    7.2  28.6       0.43   11.5  10.1    4.0  4  PRKG1_interact  cGMP-dependent protein kinase interacting dom


Domain annotation for each model (and alignments):
>> NUDE_C  NUDE protein, C-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.4   8.8   6.9e-50   5.9e-47       1     167 [.     156     320 ..     156     330 .. 0.82

  Alignments for each domain:
  == domain 1  score: 160.4 bits;  conditional E-value: 6.9e-50
      NUDE_C   1 SLEDlEskyNqaIERnvllEeeikagEqErEsLrievQRLrDelsDLkveleiiqeklrkaeeklrrrkplslsspstpqsleie.krspavqasssPv 98 
                 SLEDlEskyN+aIER+v+lEee++ gEqErE+Lrie+QRLrDelsD+k+e+eii+ekl++ae+   +++p+ +s  s p  +  + ++s++++a ssP+
  KKY21440.1 156 SLEDLESKYNVAIERGVMLEEEVRVGEQEREQLRIETQRLRDELSDMKIEAEIIKEKLQNAEQS-LAERPTMVSMESVPVPQSPRsEKSQTTTA-SSPI 252
                 9***********************************************************9988.45566666666777333344044445555.9**5 PP

      NUDE_C  99 iatppekslsslatgsetatppsPpasessdllrkvlaltsklarqrasisdsaask...rsnsrslrssrk 167
                  +tpp+ks+ss    s++ tppsPp se+s +  k    t++++++r s + +a+ +   + ++ ++r+sr+
  KKY21440.1 253 -HTPPTKSVSSGP--SDVPTPPSPPSSETSGTAPKPFV-TPSIPKSRLSTNGNATPRpiaQPTRPAVRHSRG 320
                 .5*****977666..***************99999866.**********99987776665444555555555 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   8.8    0.0008      0.69      57     118 ..      42     103 ..      35     106 .. 0.91
   2 ?    4.9   5.5      0.03        25      62     118 ..     107     163 ..     102     170 .. 0.51
   3 !    9.0   8.4    0.0016       1.4      16     101 ..     145     227 ..     138     232 .. 0.69
   4 ?    1.8   0.0      0.27   2.3e+02      53      79 ..     354     380 ..     351     383 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0008
  TPR_MLP1_2  57 kelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlneq 118
                 ++l+ ++++++ l+ae+a++++   +++a+le+   + e+++ +l+++ ++l+  +++ +++
  KKY21440.1  42 DALSYYKAQYEALEAELADFQETSRALEADLEKDIDASEKRERQLKEKADNLQYEVDEWKAK 103
                 689999***********************************************999998765 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.03
  TPR_MLP1_2  62 lreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlneq 118
                 +++e+ ++++++++  + + + + +l+ +   +e   + +e++ +++e+ +edl+++
  KKY21440.1 107 AKSESGSVQNKLQKEITTLRDQNRTLQLKLRDIEVANDDFERQARNTESSLEDLESK 163
                 555555555555555555555555555555555555555555555555555555544 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0016
  TPR_MLP1_2  16 ekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeel 101
                 + e+++++ ++  edle++ + a e     e+e+   +   +e ++lr e ++l++e++++k eae  k++l+++e+s++e+ ++ 
  KKY21440.1 145 DFERQARNTESSLEDLESKYNVAIERGVMLEEEVRVGE---QEREQLRIETQRLRDELSDMKIEAEIIKEKLQNAEQSLAERPTMV 227
                 44444555555555555555555555555555554444...5567789999****************************9997765 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.27
  TPR_MLP1_2  53 aedvkelqalreelnelkaeiaelkae 79 
                 ++ + +l++lr ++++l+++++++k++
  KKY21440.1 354 SNSIYQLRNLRGKMQRLEERVHSAKSK 380
                 566777888888888888888877776 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6  10.5      0.44   3.7e+02      26      65 ..      82     121 ..      42     126 .. 0.85
   2 ?    8.0   2.6    0.0044       3.8      22      62 ..     117     157 ..     113     158 .. 0.82
   3 ?   15.6   8.3   1.9e-05     0.016       5      64 ..     156     215 ..     152     221 .. 0.96
   4 ?    1.2   0.0      0.61   5.2e+02      18      39 ..     358     379 ..     354     383 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.44
        ZapB  26 eieeLkeeneelkeenreleeeneqlkeereawqerlkkL 65 
                 + ++Lke+  +l+ e +e +++ +q k e  ++q++l+k 
  KKY21440.1  82 RERQLKEKADNLQYEVDEWKAKYKQAKSESGSVQNKLQKE 121
                 4467888888888888888899999999999999999985 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0044
        ZapB  22 lLqmeieeLkeeneelkeenreleeeneqlkeereawqerl 62 
                 +Lq+ei  L+ +n++l+ + r +e  n+ ++ +  ++++ l
  KKY21440.1 117 KLQKEITTLRDQNRTLQLKLRDIEVANDDFERQARNTESSL 157
                 89999999999999999999999998888877776666655 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 1.9e-05
        ZapB   5 lLeqLEskiqkaidtitlLqmeieeLkeeneelkeenreleeeneqlkeereawqerlkk 64 
                  Le LEsk++ ai++   L +e++  ++e e+l  e ++l+ e++ +k e e ++e+l++
  KKY21440.1 156 SLEDLESKYNVAIERGVMLEEEVRVGEQEREQLRIETQRLRDELSDMKIEAEIIKEKLQN 215
                 69******************************************************9986 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.61
        ZapB  18 dtitlLqmeieeLkeeneelke 39 
                  +++ L+ ++++L+e++ + k+
  KKY21440.1 358 YQLRNLRGKMQRLEERVHSAKS 379
                 5677888888888888877776 PP

>> PSII_Pbs27  Photosystem II Pbs27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   3.3   7.8e-05     0.067      32      96 ..      36     113 ..      20     125 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.8e-05
  PSII_Pbs27  32 ektkadka.............lpkaYlkdarevvktlresleldkkddakreraakaakesireyvskYrsakkvsge 96 
                  +t a++a              + ++++  r++  +l++ +    k + +++++a++++ ++ e+ +kY++ak+ sg+
  KKY21440.1  36 ATTSAEDAlsyykaqyealeaELADFQETSRALEADLEKDIDASEKRERQLKEKADNLQYEVDEWKAKYKQAKSESGS 113
                 34444444444444555555578899999999999999999999999*************************999886 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   3.7   3.9e-05     0.034      15      68 ..      72     125 ..      67     128 .. 0.91
   2 ?    2.2   0.1      0.28   2.4e+02      22      48 ..     139     165 ..     130     171 .. 0.81
   3 ?    4.7   6.5     0.047        40      14      66 ..     173     225 ..     168     230 .. 0.93
   4 ?    3.4   0.0      0.12        99      39      65 ..     359     385 ..     357     387 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.9e-05
         CLZ  15 LDeeaakagaeqkeleekverLessLeaLqtrlarLlaeyessqrkLkqRitkL 68 
                 L+++  ++++ +++l+ek+++L+ +++  + ++++  +e  s+q+kL++ it L
  KKY21440.1  72 LEKDIDASEKRERQLKEKADNLQYEVDEWKAKYKQAKSESGSVQNKLQKEITTL 125
                 566677788999***************************************998 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.28
         CLZ  22 agaeqkeleekverLessLeaLqtrla 48 
                  +  ++++e+++++ essLe L+ +++
  KKY21440.1 139 IEVANDDFERQARNTESSLEDLESKYN 165
                 556778999999999999999999875 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.047
         CLZ  14 lLDeeaakagaeqkeleekverLessLeaLqtrlarLlaeyessqrkLkqRit 66 
                 +L+ee++  ++e+++l    +rL  +L  ++   + + ++++++++ L +R t
  KKY21440.1 173 MLEEEVRVGEQEREQLRIETQRLRDELSDMKIEAEIIKEKLQNAEQSLAERPT 225
                 899**99999**************************************99955 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.12
         CLZ  39 sLeaLqtrlarLlaeyessqrkLkqRi 65 
                 +L +L  +++rL + + s+++kL + i
  KKY21440.1 359 QLRNLRGKMQRLEERVHSAKSKLPAPI 385
                 688999***************997655 PP

>> Dimer_Tnp_Tn5  Transposase Tn5 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   0.00015      0.13      12      60 ..      82     130 ..      75     136 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
  Dimer_Tnp_Tn5  12 laeaveeldaelvleqdewrilylnlnkrggrypkklPkkvPtlkevir 60 
                    + + ++e+  +l +e dew++ y +    +g    kl k++ tl+   r
     KKY21440.1  82 RERQLKEKADNLQYEVDEWKAKYKQAKSESGSVQNKLQKEITTLRDQNR 130
                    5677888888999***********99999***************97665 PP

>> Flagellin_C  Bacterial flagellin C-terminal helical region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011      0.09       4      48 ..      97     141 ..      94     162 .. 0.88
   2 ?   -2.2   0.4       6.3   5.4e+03      18      45 ..     188     215 ..     182     219 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHCC CS
  Flagellin_C   4 vdeaitdldkvrselGavqnRlesaitnlkaqsenlkaaesrled 48 
                  vde   + ++++se G+vqn+l++ it l  q   l+ + +++e 
   KKY21440.1  97 VDEWKAKYKQAKSESGSVQNKLQKEITTLRDQNRTLQLKLRDIEV 141
                  56666778899*****************************99985 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 6.3
                  HHHHHHHHHHHHHHHHHHHCHHHHHHCH CS
  Flagellin_C  18 lGavqnRlesaitnlkaqsenlkaaesr 45 
                  l +  +Rl +  + +k   e++k++ ++
   KKY21440.1 188 LRIETQRLRDELSDMKIEAEIIKEKLQN 215
                  5566789999999999999999998765 PP

>> DUF2046  Uncharacterized conserved protein H4 (DUF2046)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.8   0.00081      0.69     209     272 ..      30      94 ..      21      95 .. 0.87
   2 ?   12.4  11.9   7.8e-05     0.067     212     300 ..      73     161 ..      50     165 .. 0.82
   3 ?    1.1   3.2      0.22   1.9e+02     230     267 ..     186     223 ..     173     230 .. 0.85
   4 ?    0.4   0.0      0.36   3.1e+02     184     216 ..     363     397 ..     357     435 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00081
     DUF2046 209 ppsPrdlvs.egdtaeklsahikalrkeverlrkqlkksqkeheekmaqfakeerqireenvrlq 272
                 p+sP + ++ ++d+ +  +a+ +al +e++ +++  ++ +++ e+ +++ +k erq++e+   lq
  KKY21440.1  30 PSSPPNATTsAEDALSYYKAQYEALEAELADFQETSRALEADLEKDIDASEKRERQLKEKADNLQ 94 
                 66665554438999999******************************************998887 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 7.8e-05
     DUF2046 212 Prdlvsegdtaeklsahikalrkeverlrkqlkksqkeheekmaqfakeerqireenvrlqrklqleverrealsrhlsesesslemdd 300
                  +d+ +++  + +l+++  +l+ ev++ +++ k++++e+ +  ++++ke   +r++n  lq kl+      +++ r+  ++essle  +
  KKY21440.1  73 EKDIDASEKRERQLKEKADNLQYEVDEWKAKYKQAKSESGSVQNKLQKEITTLRDQNRTLQLKLRDIEVANDDFERQARNTESSLEDLE 161
                 4566667888899***************************************************8644467899***********9545 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.22
     DUF2046 230 kalrkeverlrkqlkksqkeheekmaqfakeerqiree 267
                 ++lr e +rlr++l++++ e e   +++++ e+++ e+
  KKY21440.1 186 EQLRIETQRLRDELSDMKIEAEIIKEKLQNAEQSLAER 223
                 78999999999999999999999999999999988775 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.36
     DUF2046 184 lWkrldkleaekrllqekldqpvsapp..sPrdlv 216
                 l  ++++le   +  ++kl  p++ pp  sPr  +
  KKY21440.1 363 LRGKMQRLEERVHSAKSKLPAPITTPPraSPRSGS 397
                 56699999999999999999999999877888755 PP

>> CCDC144C  CCDC144C protein coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  14.8   0.00013      0.11      59     176 ..      45     159 ..      35     167 .. 0.82
   2 ?    2.0   4.3      0.11        93     140     177 ..     186     223 ..     158     232 .. 0.53
   3 ?   -0.2   0.0      0.51   4.4e+02      78     103 ..     359     384 ..     355     389 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
    CCDC144C  59 fqyngqLnvlkaentmlnskLekekqnkerleaevesyrsrLaaAiqdheqsqtskrdlelalqrerdewlrlqdklnfdvsnlkdknevLsqqLskae 157
                 + y+ q ++l+ae +  +   e  +     le+++++   r     + +++ q    + + ++++++ e  ++q+kl+ ++++l+d+n +L+ +L   e
  KKY21440.1  45 SYYKAQYEALEAELADFQ---ETSRALEADLEKDIDASEKRERQLKEKADNLQYEVDEWKAKYKQAKSESGSVQNKLQKEITTLRDQNRTLQLKLRDIE 140
                 444455555554444443...4556666777888889999999999999999999999***************************************** PP

    CCDC144C 158 skansLenelhetrdaLre 176
                      +e + ++t+ +L +
  KKY21440.1 141 VANDDFERQARNTESSLED 159
                 **************99975 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.11
    CCDC144C 140 snlkdknevLsqqLskaeskansLenelhetrdaLrek 177
                  +l+ + + L  +Ls ++ +a+ ++++l++++++L e+
  KKY21440.1 186 EQLRIETQRLRDELSDMKIEAEIIKEKLQNAEQSLAER 223
                 23444444444444444455555555555444444444 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.51
    CCDC144C  78 kLekekqnkerleaevesyrsrLaaA 103
                 +L + + + +rle+ v s +s+L a 
  KKY21440.1 359 QLRNLRGKMQRLEERVHSAKSKLPAP 384
                 56777778888888888888888775 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   7.5       0.1        86      89     155 ..      51     115 ..      35     121 .. 0.34
   2 ?   10.8  15.4   0.00056      0.48      24     132 ..     112     221 ..     105     251 .. 0.73
   3 ?    0.3   0.0      0.97   8.3e+02      39      61 ..     359     381 ..     356     445 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.1
        Fez1  89 vekleeelkelreelselsleeeeaalesdeakaqrqeaeeleelkreverlraeLkeerqkkeeqa 155
                  e+le+el++++e+ ++l+++ e+  ++++e k +rq +e++++l+ ev++ +a+ k+ + ++ + +
  KKY21440.1  51 YEALEAELADFQETSRALEADLEK-DIDASE-KRERQLKEKADNLQYEVDEWKAKYKQAKSESGSVQ 115
                 333333333333322222211111.111111.22222233333333333333333333333333333 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00056
        Fez1  24 aevtqkl.seivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeak 121
                   v +kl +ei +l+ q r l+ kl++ e +++++e ++++ + +le +e++ + + ++  +l+e+v+  e+e ++lr e ++l  e +++++e++  k
  KKY21440.1 112 GSVQNKLqKEITTLRDQNRTLQLKLRDIEVANDDFERQARNTESSLEDLESKYNVAIERGVMLEEEVRVGEQEREQLRIETQRLRDELSDMKIEAEIIK 210
                 4455554279*******************************************9996666666666666666666666666666555555555555555 PP

        Fez1 122 aqrqeaeelee 132
                 ++ q+ae++ +
  KKY21440.1 211 EKLQNAEQSLA 221
                 55555444333 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.97
        Fez1  39 qlrelrakleekeeeikeleesl 61 
                 qlr+lr k+++ ee++++++++l
  KKY21440.1 359 QLRNLRGKMQRLEERVHSAKSKL 381
                 68888888888888888887765 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5  19.3   0.00028      0.24      18     134 ..      60     167 ..      43     171 .. 0.75
   2 ?    3.9   5.8     0.063        54      12      68 ..     167     223 ..     165     230 .. 0.90
   3 ?    1.9   0.0      0.26   2.2e+02      36      58 ..     359     381 ..     353     386 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00028
  Tropomyosin_1  18 eleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkk.tnnealtrkiqlLEeeleesdkkLkettekLretdvkaee 112
                    + +e  ++le    + e++i   +k+ +ql e+ ++l+ ++ e k+k +++++++ + +++l++ i  L ++    +++L     kLr+++v+ ++
     KKY21440.1  60 DFQETSRALE---ADLEKDIDASEKRERQLKEKADNLQYEVDEWKAKYKQAKSESgSVQNKLQKEITTLRDQ----NRTL---QLKLRDIEVANDD 145
                    3333333333...4568899999***********************99887766514455788888887654....4444...579********** PP

  Tropomyosin_1 113 lERkvkaLeqerdewekkyeel 134
                    +ER+ ++ e++ ++ e+ky+ +
     KKY21440.1 146 FERQARNTESSLEDLESKYNVA 167
                    *******************965 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.063
  Tropomyosin_1  12 aqekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaees 68 
                    a e+   lee+v+  eqe+++   e + L   ++ +  e e ++ekl++a++++ e 
     KKY21440.1 167 AIERGVMLEEEVRVGEQEREQLRIETQRLRDELSDMKIEAEIIKEKLQNAEQSLAER 223
                    67888999*****************************************99988775 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.26
  Tropomyosin_1  36 eiksLtkknqqleeevekleekl 58 
                    ++++L  k+q lee v  +++kl
     KKY21440.1 359 QLRNLRGKMQRLEERVHSAKSKL 381
                    56778888888888888887776 PP

>> FPP  Filament-like plant protein, long coiled-coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   4.1     0.069        59     765     823 ..      49     107 ..      34     113 .. 0.63
   2 ?   10.6  15.9   0.00014      0.12     683     798 ..     108     223 ..      94     249 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.069
         FPP 765 trateleaelnelkqkieaLeveLeeekksheeleakckelqeqlervekkevskssae 823
                  + + leael   ++  +aLe++Le+  ++ e+ e + ke    l+    ++  k++++
  KKY21440.1  49 AQYEALEAELADFQETSRALEADLEKDIDASEKRERQLKEKADNLQYEVDEWKAKYKQA 107
                 56666777777777777777777777777777777666666666665555555444444 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00014
         FPP 683 neskkeenkllkeeleelksekenlevelksatenleslkaqlqesEqllaelkseLeslkeskslaetqlkcmkesyesletrateleaelnelkqki 781
                 ++++ +++++l++e++ l+ + ++l+++l++ +  ++    q +++E +l++l+s+ + + e   ++e++++  ++  e+l   ++ l++el+ +k ++
  KKY21440.1 108 KSESGSVQNKLQKEITTLRDQNRTLQLKLRDIEVANDDFERQARNTESSLEDLESKYNVAIERGVMLEEEVRVGEQEREQLRIETQRLRDELSDMKIEA 206
                 34445789999**************************************************************************************** PP

         FPP 782 eaLeveLeeekksheel 798
                 e ++++L++ ++s  e 
  KKY21440.1 207 EIIKEKLQNAEQSLAER 223
                 *********99998876 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5  12.7       0.5   4.3e+02      56     126 ..      48     118 ..      36     121 .. 0.52
   2 ?    9.8  25.0   0.00076      0.65       2     137 ..      81     232 ..      80     264 .. 0.68
   3 ?   -0.8   0.0       1.3   1.1e+03     106     137 ..     361     405 ..     355     448 .. 0.61

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.5
         ERM  56 aaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeserkeeeaerLkeeleeareaeeeakekl 126
                 +a+ e+  ++l+  +e + +  ++le+++++ e + ++l+e+ ++ + e++++k++ ++a+ +    ++kl
  KKY21440.1  48 KAQYEALEAELADFQETSRALEADLEKDIDASEKRERQLKEKADNLQYEVDEWKAKYKQAKSESGSVQNKL 118
                 44444455555555555555555555555555555555555555555555555555555555555555554 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00076
         ERM   2 eaerekreleerLk.qlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeese 99 
                 + er+ +e  + L+ ++ e  +k ++a +es    ++L+++   ++ + + L+ k +++e +++ ++++a+++e++ e+le k + a ++   leee++
  KKY21440.1  81 KRERQLKEKADNLQyEVDEWKAKYKQAKSESGSVQNKLQKEITTLRDQNRTLQLKLRDIEVANDDFERQARNTESSLEDLESKYNVAIERGVMLEEEVR 179
                 4455555555555423334445667777788888999***********************************************999999999998888 PP

         ERM 100 rkeeeaerLkeeleeareaeeeak.......ekllealstpsks........e 137
                   e+e e+L+ e ++ r+++ ++k       ekl++a ++ +++        +
  KKY21440.1 180 VGEQEREQLRIETQRLRDELSDMKieaeiikEKLQNAEQSLAERptmvsmesV 232
                 88888888888888888887555522211114444444444332555443330 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.3
         ERM 106 erLkeeleeareaeeeakekllealstpsks.............e 137
                 ++L+ ++++ +e+   ak+kl + ++tp +              +
  KKY21440.1 361 RNLRGKMQRLEERVHSAKSKLPAPITTPPRAsprsgsalghnipS 405
                 567778888888888888888888777744356666555555442 PP

>> Chibby  Chibby family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   4.8   0.00039      0.34      32      95 ..      70     136 ..      53     142 .. 0.77
   2 ?    0.7   0.3       0.8   6.8e+02      39      97 ..     149     208 ..     137     215 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00039
      Chibby  32 revelgld...ygtiklkLgdqelvFedGqWvsesggaggasskeslrlkkenkqLeeEnnllklkl 95 
                  ++e ++d    ++ +lk +  +l++e  +W +++++a+  s + + +l+ke+ +L+++n  l+lkl
  KKY21440.1  70 ADLEKDIDaseKRERQLKEKADNLQYEVDEWKAKYKQAKSESGSVQNKLQKEITTLRDQNRTLQLKL 136
                 445555552113334444456789*****************************************97 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.8
      Chibby  39 dygtiklkLgdqelvF....edGqWvsesggaggasskeslrlkkenkqLeeEnnllklklev 97 
                 ++++++ +L+d e ++    e G+ + e  + g+   +e ++l+ e+++L++E   +k++ e+
  KKY21440.1 149 QARNTESSLEDLESKYnvaiERGVMLEEEVRVGE---QEREQLRIETQRLRDELSDMKIEAEI 208
                 5555555555555555444466666655444443...56667777777777777666666665 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  22.5    0.0025       2.2     361     541 ..      41     221 ..      28     227 .. 0.56

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0025
     DUF3584 361 eeleeeldaltekhqdvqekydrrkqkikeeleeeleklkerleaireekdrlkaaieealealesqlrkqleaqkeelneeekelesrlselklrlds 459
                 e++   ++a+ e+ ++  + +++   +++ +le+++   ++r+ +++e++d+l+ +  ++ +a  +q +++ +  +++l++e   l+ +   l+l+l++
  KKY21440.1  41 EDALSYYKAQYEALEAELADFQETSRALEADLEKDIDASEKRERQLKEKADNLQYEV-DEWKAKYKQAKSESGSVQNKLQKEITTLRDQNRTLQLKLRD 138
                 444444444444444444455555555555555666665555555555555533333.33444444444555566666666666666666666666666 PP

     DUF3584 460 atateEeleqi.eeadealekaqeelekaeaevealqaeeeqlrkkrdeadealqkaerrleqlrqaleeleeqlsPqagsLl 541
                   + ++  e++ ++ ++ le  +++++ a ++   l++e ++ +++r++     q+ ++ l++ + ++e ++e l  +++sL 
  KKY21440.1 139 IEVANDDFERQaRNTESSLEDLESKYNVAIERGVMLEEEVRVGEQEREQLRIETQRLRDELSDMKIEAEIIKEKLQNAEQSLA 221
                 55554444433144556666666666666666666666666666666666666666666666666666666666666666664 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  28.7     0.004       3.4      87     256 ..      54     223 ..      36     232 .. 0.76
   2 ?   -2.3   0.0       2.9   2.5e+03     256     277 ..     359     380 ..     354     383 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.004
                 XXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXX CS
    Filament  87 lrkkyekelnkreevEaelk.alrkdldeatlarvdLekkvesLkeelaflkkvhee...EvkelqkqvseqvlvevdaarkldLteilkei...raqy 178
                 l    e el++ +e+ ++l+ +l kd+d+   +  +L +k + L+ e++  k  +++   E   +q++++++++   d++r+l L+  l++i    +++
  KKY21440.1  54 L----EAELADFQETSRALEaDLEKDIDASEKRERQLKEKADNLQYEVDEWKAKYKQaksESGSVQNKLQKEITTLRDQNRTLQLK--LRDIevaNDDF 146
                 2....2333333333333321456****************************9998622256666677766666666666666665..55552225799 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 179 eelaeknreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleae 256
                 e++a++ ++++e+  +sk++ + e   + +e++r  ++e ++lr + q+l+ el+++k +++ ++++l+++e+ l++ 
  KKY21440.1 147 ERQARNTESSLEDL-ESKYNVAIERGVMLEEEVRVGEQEREQLRIETQRLRDELSDMKIEAEIIKEKLQNAEQSLAER 223
                 99999888888875.999999999999********************************************9988765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.9
                 HHHHHHHHHHHHHHHHHHHHHH CS
    Filament 256 eleklqeklseleeelaeiree 277
                 +l++l+ k+++lee +++++++
  KKY21440.1 359 QLRNLRGKMQRLEERVHSAKSK 380
                 5667777777777777777765 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   7.2     0.062        53      27      86 ..      47     110 ..      42     131 .. 0.73
   2 ?   10.6   4.7   0.00027      0.23      14      96 ..     133     222 ..     130     249 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.062
        Tho2  27 Yekeieklkseieel...akdrsde.raaakkkkkekkrlkeliekLeeEkkeqiehvekvkkr 86 
                 Y+++ e l++e+++    +++ ++  +++++ ++k++++lke +++L+ E +e ++++++ k++
  KKY21440.1  47 YKAQYEALEAELADFqetSRALEADlEKDIDASEKRERQLKEKADNLQYEVDEWKAKYKQAKSE 110
                 6666666666666664333444555699999999999***********9999999999988875 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00027
        Tho2  14 slslyDiyvpkeqYekeieklkseieel......akdrsde.raaakkkkkekkrlkeliekLeeEkkeqiehvekvkkrLkeekkswfk 96 
                 +l+l Di v ++ +e++  + +s++e+l      a +r  + +++ +  ++e+++l+   ++L++E++  + + e +k++L++  +s+ +
  KKY21440.1 133 QLKLRDIEVANDDFERQARNTESSLEDLeskynvAIERGVMlEEEVRVGEQEREQLRIETQRLRDELSDMKIEAEIIKEKLQNAEQSLAE 222
                 799*************************98888877778888999999************************************999887 PP

>> DASH_Duo1  DASH complex subunit Duo1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2       2.8   2.4e+03       1      47 [.      53     100 ..      53     109 .. 0.75
   2 ?    6.9   0.7    0.0063       5.4       1      40 [.     117     156 ..     117     164 .. 0.94
   3 ?    3.3   0.0     0.081        69      19      41 ..     356     378 ..     354     381 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.8
   DASH_Duo1   1 aLekEleqLrkinevie.nviesLkkaksniervketvestntLLdkW 47 
                 aLe+El   ++  +++e +++++++++++   ++ke+ ++ +  +d+W
  KKY21440.1  53 ALEAELADFQETSRALEaDLEKDIDASEKRERQLKEKADNLQYEVDEW 100
                 689999999999999983478888888888888888777776666666 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0063
   DASH_Duo1   1 aLekEleqLrkinevienviesLkkaksniervketvest 40 
                 +L+kE+++Lr+ n++++    +++ a+++ er ++++es+
  KKY21440.1 117 KLQKEITTLRDQNRTLQLKLRDIEVANDDFERQARNTESS 156
                 69******************************99999986 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.081
   DASH_Duo1  19 viesLkkaksniervketvestn 41 
                 +i +L++ +++++r++e+v+s++
  KKY21440.1 356 SIYQLRNLRGKMQRLEERVHSAK 378
                 56689999***********9986 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   9.7   0.00035       0.3     176     260 ..      79     164 ..      69     178 .. 0.60
   2 ?    1.3   2.2      0.14   1.2e+02     191     245 ..     182     240 ..     163     265 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00035
  Fmp27_WPPW 176 leeRleeleeqiekleekleelelkseke.......deelkeeieelekeikelkeklefletlledlkeseesseeeeskskelsaastse 260
                  e+R ++l+e+ ++l+ +++e + k ++        +++l++ei +l+++ ++l+ kl+ +e + +d+++++++      ++++l++ ++++
  KKY21440.1  79 SEKRERQLKEKADNLQYEVDEWKAKYKQAksesgsvQNKLQKEITTLRDQNRTLQLKLRDIEVANDDFERQARN------TESSLEDLESKY 164
                 45666677777776666666666666666333333367777777777777777777777777777777776653......334444444444 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.14
  Fmp27_WPPW 191 eekleelelksekedeelkeeieelekeikelkeklefletlledlkeseesse...............e 245
                 e++           +e+l+ e+++l++e++++k + e++++ l++ ++s +++                +
  KKY21440.1 182 EQE-----------REQLRIETQRLRDELSDMKIEAEIIKEKLQNAEQSLAERPtmvsmesvpvpqsprS 240
                 222...........34455566666666666666666666666666665553334444444665432210 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.0   0.00032      0.28     210     296 ..      47     133 ..      18     137 .. 0.77
   2 ?   -1.0   1.1         1   8.7e+02     242     290 ..     173     222 ..     142     247 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00032
       FAM76 210 ldsnssdhlvavtqLkeeiaslkkqleqkdqellek.dkkitelkaellekekelreklkelekeakekieklekkirellkevaels 296
                  ++++     ++++++e+ + l+  le kd + +ek ++++ e   +l+++  e++ k+k+ ++e+ + ++kl+k+i++l+ ++ +l+
  KKY21440.1  47 YKAQYEALEAELADFQETSRALEADLE-KDIDASEKrERQLKEKADNLQYEVDEWKAKYKQAKSESGSVQNKLQKEITTLRDQNRTLQ 133
                 555555555667778888888888885.77777776267777766666667799***************************9987775 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1
       FAM76 242 llekdkkitelkaellekek.elreklkelekeakekieklekkirellk 290
                 +le +  + e   e+l+ e+ +lr+ l++++ ea+   ekl++  ++l  
  KKY21440.1 173 MLEEEVRVGEQEREQLRIETqRLRDELSDMKIEAEIIKEKLQNAEQSLAE 222
                 45555555555555555443134555555555555555555555555543 PP

>> PRKG1_interact  cGMP-dependent protein kinase interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  10.8      0.12     1e+02      10      93 ..      48     132 ..      42     133 .. 0.70
   2 ?   11.5  10.1   0.00051      0.43       3      89 ..     101     198 ..      99     200 .. 0.75
   3 ?   11.0   2.8   0.00071      0.61       7      56 ..     186     231 ..     183     250 .. 0.82
   4 ?    0.0   0.0       1.9   1.6e+03      15      35 ..     362     382 ..     354     447 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.12
  PRKG1_interact  10 keenerLkreLeelekelselkseleklkqqrqesvskrssllelekrerrslerkiseleeel.keleeLraenqrLkdEngAL 93 
                     k++ e L +eL + ++  + l++ lek    ++++  + ++ ++  + e  + + k+++  +e   + ++L++e   L+d n+ L
      KKY21440.1  48 KAQYEALEAELADFQETSRALEADLEKDIDASEKRERQLKEKADNLQYEVDEWKAKYKQAKSESgSVQNKLQKEITTLRDQNRTL 132
                     5677889999999999999999999997766555555555566666666666666666664444256667888888888888876 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00051
  PRKG1_interact   3 kkLYeeekee....nerLkreLeelekelselkseleklkqq....rqesvskrssllelekrerrslerkiseleeel....keleeLraenqr 85 
                     k+ Y+++k+e    +++L++e+++l+ + ++l+ +l  +++     +++  +++ssl +le++ + ++er ++ leee+    +e e+Lr e qr
      KKY21440.1 101 KAKYKQAKSEsgsvQNKLQKEITTLRDQNRTLQLKLRDIEVAnddfERQARNTESSLEDLESKYNVAIERGVM-LEEEVrvgeQEREQLRIETQR 194
                     5556666665222267888888999999999999999888774444334677788899999999999999998.5666645668999******** PP

  PRKG1_interact  86 LkdE 89 
                     L+dE
      KKY21440.1 195 LRDE 198
                     ***9 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00071
  PRKG1_interact   7 eeekeenerLkreLeelekelselkseleklkqqrqesvskrssllelek 56 
                     e+ + e++rL++eL++++ e + +k++l++++q+    +++r +++++e+
      KKY21440.1 186 EQLRIETQRLRDELSDMKIEAEIIKEKLQNAEQS----LAERPTMVSMES 231
                     567889**********************998855....778888887775 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 1.9
  PRKG1_interact  15 rLkreLeelekelselksele 35 
                     +L+ ++++le++++++ks+l 
      KKY21440.1 362 NLRGKMQRLEERVHSAKSKLP 382
                     567777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1851  (0.103241); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                       142  (0.00792013); expected 17.9 (0.001)
Passed Fwd filter:                        75  (0.00418317); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 1.31u 0.40s 00:00:01.71 Elapsed: 00:00:00.58
# Mc/sec: 3151.58
//
Query:       KKY21441.1  [L=456]
Description: putative isochorismatase family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-39  134.9   0.0    1.9e-38  132.4   0.0    2.2  3  Isochorismatase  Isochorismatase family
    7.2e-06   26.6   0.0    1.3e-05   25.8   0.0    1.3  1  FAR1             FAR1 DNA-binding domain
  ------ inclusion threshold ------
      0.061   13.7   0.1      0.095   13.1   0.1    1.3  1  AFT              Transcription factor AFT


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.87   5.2e+03     135     145 ..      53      63 ..      52      76 .. 0.77
   2 ?   -1.3   0.0      0.35   2.1e+03      34      53 ..     114     143 ..      98     160 .. 0.64
   3 !  132.4   0.0   3.2e-42   1.9e-38       1     164 [.     173     358 ..     173     372 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.87
  Isochorismatase 135 ldlGyevvvvs 145
                      +++Gy+vvv +
       KKY21441.1  53 RQHGYNVVVKT 63 
                      689****9965 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.35
  Isochorismatase  34 lkaarkagip...viftrdvhe.......l 53 
                      l+a++++g++   v++  ++h+       +
       KKY21441.1 114 LQAVCENGMWflrVLVAHHNHPpndangiT 143
                      678899997755578888888833333222 PP

  == domain 3  score: 132.4 bits;  conditional E-value: 3.2e-42
  Isochorismatase   1 talvviDmqndfv......eegvkeseeisavveninkllkaarkagipviftrdvhe................leevkgdlderkaaphfkpg 72 
                      talv+iDmq+df+       +++ ++ +++++++n +  l a+r++g pv +tr  h+                 +   g  d+++  + +++g
       KKY21441.1 173 TALVIIDMQRDFCehggylTAQGYSVDGVRKIIPNLVNILSAFRASGFPVYHTREGHRpdlstlsdrervrsknNPAGIGIGDPGPLGRFLVRG 266
                      8****************99999*************************************************9988889999************* PP

  Isochorismatase  73 ttgaelvpelaplegdvvvdKtrfsafagtdldeiLkelgiktivlaGiatdvCVeatardaldlGyevvvvsDAvaalspelhdaalkrlk 164
                      ++g++ +pel p eg++v+dK + +afa td++ +L+ +gi++++++G++tdvCV +t+r+a+d+ +++ +++DA+aa +p l    l+++k
       KKY21441.1 267 EPGHDTIPELYPIEGEPVIDKPGRGAFAHTDFELLLRIKGIRNLIICGVTTDVCVSTTMREANDRAFDCLLLEDATAAAEPSLCSSTLESVK 358
                      ********************************************************************************999888887777 PP

>> FAR1  FAR1 DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   2.2e-09   1.3e-05       4      87 ..      49     135 ..      48     137 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 2.2e-09
        FAR1   4 keYakrvGFsvrvkksrrsr..kdgeiirrkfvCskeGfkkekkkt..keakrerastrtgCkAmlvvkkekegkwvvtklvkeHNHe 87 
                 +eY+++ G+ v vk+s+  +  k ++i +  + C k G+ ++++    + +kr+r+s  ++C  +l+    ++g w ++ lv++HNH+
  KKY21441.1  49 QEYGRQHGYNVVVKTSSIPTpsKPHRIAKVWLRCDKGGTYRPRNGLteETRKRKRSSRLVNCPFQLQAVC-ENGMWFLRVLVAHHNHP 135
                 68**********999986551155567788899*****9999987743445666677779***9999755.68**************7 PP

>> AFT  Transcription factor AFT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.6e-05     0.095      45     110 ..      72     135 ..      40     136 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.6e-05
                 XXX........................XXXXXXXXXX----EEEEEEETTTTEEEEEEEE---SS- CS
         AFT  45 asekskeeekaedestvseeetsskkkkkkravsrynsCPfrvratyslkrkkWsivvvnnehshe 110
                  ++++k   + +++ t ++ ++ +++++k++ +sr  +CPf+++a     +  W + v+  +h+h+
  KKY21441.1  72 PHRIAKVWLRCDKGGTYRPRNGLTEETRKRKRSSRLVNCPFQLQAV--CENGMWFLRVLVAHHNHP 135
                 444445555556666888999999999999999***********97..68999**********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.52
# Mc/sec: 2634.05
//
Query:       KKY21442.1  [L=297]
Description: putative ring finger domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-07   31.0   5.4    2.3e-06   27.5   1.8    2.6  2  zf-RING_UBOX  RING-type zinc-finger
    2.3e-05   24.2   3.7    2.3e-05   24.2   3.7    2.4  2  zf-RING_5     zinc-RING finger domain
    2.9e-05   24.1   4.7      0.011   15.9   2.5    2.9  2  FYVE          FYVE zinc finger
    4.7e-05   23.2   1.4    4.7e-05   23.2   1.4    2.8  3  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
      9e-05   22.7   1.1      9e-05   22.7   1.1    2.9  3  zf-RING_2     Ring finger domain
    0.00016   21.4   2.1    0.00016   21.4   2.1    2.6  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
     0.0015   17.9   0.7     0.0015   17.9   0.7    2.4  2  Rtf2          Rtf2 RING-finger
     0.0068   16.2   6.6     0.0068   16.2   6.6    3.1  2  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.051   13.5   1.3      0.051   13.5   1.3    2.1  2  zf-C3HC4_5    Zinc finger, C3HC4 type (RING finger)
       0.85    9.9   6.2        1.3    9.3   0.0    3.3  4  zf-AD         Zinc-finger associated domain (zf-AD)
       0.86    9.8   4.9       0.29   11.3   1.0    2.0  2  RGCC          Response gene to complement 32 protein family
       0.91    9.6   9.1        5.8    7.0   3.8    3.2  2  DZR           Double zinc ribbon
        1.1    9.4   9.8       0.22   11.7   2.4    3.2  3  zf-C3HC4_4    zinc finger of C3HC4-type, RING
        1.3    9.2   4.1        1.4    9.2   1.0    2.3  2  RIG-I_C-RD    C-terminal domain of RIG-I
          2    8.4  15.5       0.08   12.8   5.5    3.2  4  Prok-RING_4   Prokaryotic RING finger family 4
        3.4    6.9  11.2        6.2    6.1   0.0    3.0  3  FAM76         FAM76 protein
        4.5    7.6   8.5        5.2    7.4   1.0    2.9  3  IBR           IBR domain, a half RING-finger domain
        6.6    6.9   7.7        3.6    7.8   3.5    2.6  2  zf-RING_10    zinc RING finger of MSL2


Domain annotation for each model (and alignments):
>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.046        45      20      26 ..      12      23 ..      11      39 .. 0.66
   2 !   27.5   1.8   2.3e-09   2.3e-06       1      26 [.     176     205 ..     176     227 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.046
  zf-RING_UBOX 20 FCreCl.....w 26
                  FCreC       
    KKY21442.1 12 FCRECAvsnllA 23
                  *****9643330 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 2.3e-09
  zf-RING_UBOX   1 CpIClelftdP...lvl.pCGHtFCreClw 26 
                   Cp C+ ++t+    +++ pCGH++C++C++
    KKY21442.1 176 CPSCKKSLTNAskaVLTkPCGHVLCKPCVT 205
                   *********7777555779*********93 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2       1.4   1.4e+03      23      30 ..      11      18 ..       5      28 .. 0.78
   2 !   24.2   3.7   2.3e-08   2.3e-05       2      42 ..     176     236 ..     175     238 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.4
   zf-RING_5 23 ifCekClk 30
                 fC +C+ 
  KKY21442.1 11 LFCRECAV 18
                59999975 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 2.3e-08
   zf-RING_5   2 CnkCfeklskeek.fyltsCgHifCekClkkll...................ekeavCpiC 42 
                 C++C ++l++ +k + + +CgH++C+ C++k +                     +  C +C
  KKY21442.1 176 CPSCKKSLTNASKaVLTKPCGHVLCKPCVTKFMkpaegpdphakiievsdsdVGRILCYVC 236
                 ********55555266679************997777666666666666666666666666 PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0053       5.2      26      47 ..       3      24 ..       1      88 [. 0.78
   2 !   15.9   2.5   1.1e-05     0.011      10      66 ..     174     240 ..     165     266 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0053
                EE-TTT--EE-STTS-EEE.EE CS
        FYVE 26 hhCrlCGkvvCekCssklvall 47
                h C + G+++C++C  +++ ++
  KKY21442.1  3 HTCATNGDLFCRECAVSNLLAQ 24
                99************95444333 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.1e-05
                 SB-TTT--B--SSS--EE-TTT--EE-STTS-EEE.EE..........GGGTEEEEEEE-HHHHHHH CS
        FYVE  10 kkCeiCakkFsllrrrhhCrlCGkvvCekCssklvall..........ekeaeeksvrvCkeClael 66 
                 + C++C+k+ +  ++    + CG+v+C+ C +k+++            e ++++    +C  C  ++
  KKY21442.1 174 AICPSCKKSLTNASKAVLTKPCGHVLCKPCVTKFMKPAegpdphakiiEVSDSDVGRILCYVCETDV 240
                 57********999******************999977666666655543334444445677776655 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.28   2.8e+02      21      31 ..      12      22 ..       9      29 .. 0.76
   2 !   23.2   1.4   4.8e-08   4.7e-05       1      31 [.     176     209 ..     176     215 .. 0.90
   3 ?   -3.0   0.1       6.9   6.9e+03       1       5 [.     233     237 ..     232     242 .. 0.53

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.28
                B-CHHHHHHHH CS
    zf-C3HC4 21 fCskCirkilk 31
                fC++C ++ l 
  KKY21442.1 12 FCRECAVSNLL 22
                9****887665 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 4.8e-08
                 -TTT-S--SS-E....E-TTS--B-CHHHHHHHH CS
    zf-C3HC4   1 CpiCleeakepn...elleCkHsfCskCirkilk 31 
                 Cp C++ +++++    + +C+H +C++C++k +k
  KKY21442.1 176 CPSCKKSLTNASkavLTKPCGHVLCKPCVTKFMK 209
                 9999999998888889**************9987 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 6.9
                 -TTT- CS
    zf-C3HC4   1 CpiCl 5  
                 C +C 
  KKY21442.1 233 CYVCE 237
                 55554 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.2      0.36   3.6e+02      24      33 ..      11      21 ..       2      27 .. 0.66
   2 !   22.7   1.1   9.1e-08     9e-05       3      36 ..     176     210 ..     174     213 .. 0.86
   3 ?   -2.3   0.0       5.9   5.9e+03       3       6 ..     233     236 ..     221     242 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.36
   zf-RING_2 24 vfhreCl.erw 33
                 f+reC+ +++
  KKY21442.1 11 LFCRECAvSNL 21
                6*****62444 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 9.1e-08
   zf-RING_2   3 CpICleelssadsvlll.pCgHvfhreClerwlrs 36 
                 Cp C ++l++a++++l+ pCgHv ++ C+++++++
  KKY21442.1 176 CPSCKKSLTNASKAVLTkPCGHVLCKPCVTKFMKP 210
                 ********99999775559**********998775 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 5.9
   zf-RING_2   3 CpIC 6  
                 C +C
  KKY21442.1 233 CYVC 236
                 4444 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.38   3.8e+02      22      31 ..      12      21 ..       4      27 .. 0.78
   2 !   21.4   2.1   1.6e-07   0.00016       2      32 ..     176     209 ..     175     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.38
  zf-C3HC4_2 22 fCqkCilrsL 31
                fC++C    L
  KKY21442.1 12 FCRECAVSNL 21
                9****87744 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 1.6e-07
  zf-C3HC4_2   2 CpiCldmlkdps...vvtpCgHvfCqkCilrsLe 32 
                 Cp C  +l ++s    ++pCgHv C+ C+ + ++
  KKY21442.1 176 CPSCKKSLTNASkavLTKPCGHVLCKPCVTKFMK 209
                 999999999875222678***********99775 PP

>> Rtf2  Rtf2 RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   3.0      0.12   1.2e+02     167     241 ..      20      97 ..       2     117 .. 0.53
   2 !   17.9   0.7   1.6e-06    0.0015      81     162 ..     150     242 ..     136     277 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.12
        Rtf2 167 plnptkeelellkarleeekakkkkkkkakkkkkakakgskaeaeaaskssseas...esskagkkkekkkekkkrsl 241
                  l  +  e + l++++e eka+ + +  +++ ++++++ ++ e++ a   ++++    es++ag++k ++++ +++++
  KKY21442.1  20 NLLAQRKEIKRLEKEWEREKAELEDADLRREAEAKENELTEFENTMAGFGEKRKRldfESNTAGRDKRRRASGTDQDM 97 
                 567777888888888888888855555544444444444444444444333333333444444444444444333333 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 1.6e-06
        Rtf2  81 hikglkdvvelkltknpafeeskkdatkdtkeapfiCpltglemngktkfvalrkCGcVfsekalkevksev.....................ClvCgk 158
                 h  +lk++ve+++t + +++          k    iCp  ++++    k+v  ++CG+V+ +  + ++ +                       C vC++
  KKY21442.1 150 HHYSLKSLVEVNFTLESDST----------KGPTAICPSCKKSLTNASKAVLTKPCGHVLCKPCVTKFMKPAegpdphakiievsdsdvgrilCYVCET 238
                 66799999999999997444..........44567**************************99998875333467888899999999999999999998 PP

        Rtf2 159 eyke 162
                 + +e
  KKY21442.1 239 DVTE 242
                 8765 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.3      0.72   7.2e+02      25      32 ..      12      19 ..       3      27 .. 0.75
   2 !   16.2   6.6   6.9e-06    0.0068       4      35 ..     175     209 ..     173     243 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.72
                E-HHHHHH CS
  zf-C3HC4_3 25 lCeeCaek 32
                +C eCa +
  KKY21442.1 12 FCRECAVS 19
                89999864 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 6.9e-06
                 B-TTTSS...S.BS-EEETTEEEEEE-HHHHHHHHH CS
  zf-C3HC4_3   4 eCviCle...r.prnvvllpCgHlvlCeeCaekllk 35 
                 +C+ C++   +  + v+  pCgH+ lC+ C++k++k
  KKY21442.1 175 ICPSCKKsltNaSKAVLTKPCGHV-LCKPCVTKFMK 209
                 6999*995542255566679****.********977 PP

>> zf-C3HC4_5  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       5.2   5.1e+03       4      11 ..     138     145 ..     136     149 .. 0.67
   2 ?   13.5   1.3   5.1e-05     0.051       3      43 ..     175     215 ..     173     220 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.2
  zf-C3HC4_5   4 CPvCkssr 11 
                  PvC +s+
  KKY21442.1 138 NPVCPASK 145
                 57776654 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 5.1e-05
  zf-C3HC4_5   3 iCPvCkssrYlnpdleflinpeCYhkmCesCvdRlFs..dGPn 43 
                 iCP Ck s  l +  + ++   C h +C+ Cv +  +  +GP+
  KKY21442.1 175 ICPSCKKS--LTNASKAVLTKPCGHVLCKPCVTKFMKpaEGPD 215
                 8****965..555566666777***********9987224443 PP

>> zf-AD  Zinc-finger associated domain (zf-AD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       4.2   4.2e+03       2       7 ..      13      19 ..      11      55 .. 0.66
   2 ?    9.3   0.0    0.0013       1.3      35      60 ..     159     187 ..     144     192 .. 0.75
   3 ?    1.6   0.4      0.33   3.3e+02      46      57 ..     197     208 ..     188     210 .. 0.82
   4 ?   -1.1   0.0       2.4   2.4e+03      42      60 ..     226     244 ..     221     245 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.2
       zf-AD  2 CRlCl.s 7 
                CR C  s
  KKY21442.1 13 CRECAvS 19
                6666641 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0013
       zf-AD  35 glele...pddslpekiCesCleklqefy 60 
                 +++++   ++ + p+ iC sC+++l+++ 
  KKY21442.1 159 EVNFTlesDSTKGPTAICPSCKKSLTNAS 187
                 4444443667778889*********9985 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.33
       zf-AD  46 ekiCesCleklq 57 
                 + +C++C++k++
  KKY21442.1 197 HVLCKPCVTKFM 208
                 569*****9986 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 2.4
       zf-AD  42 dslpekiCesCleklqefy 60 
                  ++++ +C  C + ++e y
  KKY21442.1 226 SDVGRILCYVCETDVTELY 244
                 5667778999988888876 PP

>> RGCC  Response gene to complement 32 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.0    0.0003      0.29      21      94 ..      47     120 ..      27     147 .. 0.77
   2 ?   -0.5   0.2       1.3   1.3e+03      79     116 ..     154     191 ..     149     193 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0003
        RGCC  21 laaeaddLsdvLcefdavledfesPvekrhfrYeehLkelkrrssasvsDsGisdsesadslnrsslsfsdekL 94 
                 l  ea+   + L+ef++ +++f    ++  f+ +   +  +rr+s    D  +  + s +s+++ss sf    L
  KKY21442.1  47 LRREAEAKENELTEFENTMAGFGEKRKRLDFESNTAGRDKRRRASGTDQDMSMGSTGSEKSSKQSSQSFWVPGL 120
                 344555566789***********99999999999999999**********999999999999999988765555 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.3
        RGCC  79 adslnrsslsfsdekLnsptasspslssplvvsrkakL 116
                  +sl    +++  +    pta  ps + +l+ ++ka L
  KKY21442.1 154 LKSLVEVNFTLESDSTKGPTAICPSCKKSLTNASKAVL 191
                 56777778888888899999999999999999999866 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2      0.23   2.2e+02       9      19 ..       7      17 ..       3      28 .. 0.72
   2 ?    7.0   3.8    0.0058       5.8       1      38 [.     176     240 ..     139     243 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.23
         DZR  9 ppdarfCseCg 19
                ++++ fC eC 
  KKY21442.1  7 TNGDLFCRECA 17
                45666777775 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0058
         DZR   1 CpqCgee..........lppdarfCseCgtklkavaa.................edrCpsCgekv 38 
                 Cp+C++            p +   C+ C tk  ++a+                  + C  C+++v
  KKY21442.1 176 CPSCKKSltnaskavltKPCGHVLCKPCVTKFMKPAEgpdphakiievsdsdvgRILCYVCETDV 240
                 66666664433333333333333555555554444446777777777777777777777777765 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2      0.82   8.1e+02      18      26 ..      10      18 ..       2      27 .. 0.73
   2 ?   11.7   2.4   0.00022      0.22       1      33 [.     176     212 ..     176     217 .. 0.71
   3 ?   -2.0   0.0       4.3   4.3e+03      36      42 .]     230     236 ..     220     237 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.82
  zf-C3HC4_4 18 hsfClsCis 26
                  fC +C  
  KKY21442.1 10 DLFCRECAV 18
                568888854 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00022
  zf-C3HC4_4   1 CPiCldYLekP....vsleCGhsfClsCisslqkepd 33 
                 CP C + L++      + +CGh+ C  C+++++k ++
  KKY21442.1 176 CPSCKKSLTNAskavLTKPCGHVLCKPCVTKFMKPAE 212
                 6666666665422213458************999766 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 4.3
  zf-C3HC4_4  36 qllCplC 42 
                   lC++C
  KKY21442.1 230 RILCYVC 236
                 3788888 PP

>> RIG-I_C-RD  C-terminal domain of RIG-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1       1.1     1e+03       3      10 ..      11      18 ..       3      49 .. 0.65
   2 ?    9.2   1.0    0.0014       1.4       4      67 ..     175     240 ..     173     245 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.1
  RIG-I_C-RD  3 llCkkCkk 10
                l C++C +
  KKY21442.1 11 LFCRECAV 18
                45555543 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0014
  RIG-I_C-RD   4 lCkkCkkevcsssdirvienshhvvvnpefkelvkvk.ekkkkekkf.edfekkgkikCkkCkkdw 67 
                 +C +Ckk ++++s+  + + + hv ++p + +++k    ++++ k +  + +  g+i C  C++d+
  KKY21442.1 175 ICPSCKKSLTNASKAVLTKPCGHVLCKPCVTKFMKPAeGPDPHAKIIeVSDSDVGRILCYVCETDV 240
                 7**********************************99667777777744445899*******9986 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.3      0.51   5.1e+02      18      26 ..      10      18 ..       3      23 .. 0.81
   2 ?    1.8   0.1      0.22   2.2e+02      32      42 ..     175     185 ..     167     189 .. 0.78
   3 ?   12.8   5.5     8e-05      0.08       1      26 [.     176     205 ..     176     211 .. 0.74
   4 ?   -3.1   0.1       7.4   7.4e+03       1       5 [.     233     237 ..     230     242 .. 0.53

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.51
  Prok-RING_4 18 HlvCkeCfd 26
                  l+C+eC  
   KKY21442.1 10 DLFCRECAV 18
                 589****75 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.22
  Prok-RING_4  32 sCPlCqrrisk 42 
                   CP C++ + +
   KKY21442.1 175 ICPSCKKSLTN 185
                  59999998865 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 8e-05
  Prok-RING_4   1 CvlCgeq....ekkailepCgHlvCkeCfd 26 
                  C +C+++     k +  +pCgH++Ck C  
   KKY21442.1 176 CPSCKKSltnaSKAVLTKPCGHVLCKPCVT 205
                  666666655545666678**********76 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 7.4
  Prok-RING_4   1 CvlCg 5  
                  C +C+
   KKY21442.1 233 CYVCE 237
                  33333 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   1.9     0.012        12     119     195 ..       8      84 ..       3     121 .. 0.47
   2 ?    0.2   0.8      0.38   3.8e+02      94     130 ..     171     206 ..     163     214 .. 0.53
   3 ?    6.1   0.0    0.0062       6.2     120     155 ..     229     264 ..     222     275 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.012
       FAM76 119 dGklLCwlCtlsykralakakeeeeekrskskkkkskskkskkskekskekkaskkkskkhkkrssrlevskleeek 195
                 +G l C  C +s   a++k+ ++ e++ +++k + + ++ +++ + k++e ++ +++     ++ +rl+  + + ++
  KKY21442.1   8 NGDLFCRECAVSNLLAQRKEIKRLEKEWEREKAELEDADLRREAEAKENELTEFENTMAGFGEKRKRLDFESNTAGR 84 
                 899********998888877555444333333333333344443433333333333333333333333333333111 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.38
       FAM76  94 GkpvtCeqCkqkcAfdrkdedrkkvdGklLCwlCtls 130
                 G+   C +Ck+      +++   k  G++LC  C  +
  KKY21442.1 171 GPTAICPSCKKSLTNA-SKAVLTKPCGHVLCKPCVTK 206
                 5555556665544443.22333555566666555544 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0062
       FAM76 120 GklLCwlCtlsykralakakeeeeekrskskkkksk 155
                 G++LC++C   +    a a  ++e ++++++k +++
  KKY21442.1 229 GRILCYVCETDVTELYADATGDKEGRKARKDKGEKE 264
                 99*********9998888887777655555444443 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.6     0.067        67      40      54 ..       4      18 ..       1      20 [. 0.86
   2 ?    7.4   1.0    0.0053       5.2      16      47 ..     168     206 ..     150     212 .. 0.65
   3 ?   -2.1   0.0       4.8   4.8e+03      36      46 ..     228     238 ..     214     240 .. 0.58

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.067
         IBR 40 tCskCgfefCfnCkk 54
                tC++ g  fC +C +
  KKY21442.1  4 TCATNGDLFCRECAV 18
                7************75 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0053
         IBR  16 pn...lkwCprpdCeaiiekseg......cksvtCskCgfe 47 
                 ++   +  Cp   C++ + + ++      c++v C+ C ++
  KKY21442.1 168 STkgpTAICP--SCKKSLTNASKavltkpCGHVLCKPCVTK 206
                 33344889*9..9**98877777555555555666655554 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 4.8
         IBR  36 cksvtCskCgf 46 
                  +++ C  C++
  KKY21442.1 228 VGRILCYVCET 238
                 44455666654 PP

>> zf-RING_10  zinc RING finger of MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.5    0.0036       3.6       3      34 ..     176     208 ..     174     212 .. 0.80
   2 ?   -0.6   0.0       1.5   1.5e+03       2      38 ..     232     268 ..     231     271 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0036
  zf-RING_10   3 CvvCckLLvdPlepk.ekeCqHyvCrlCvgkkk 34 
                 C  C k L++  ++  +k C+H +C+ Cv k +
  KKY21442.1 176 CPSCKKSLTNASKAVlTKPCGHVLCKPCVTKFM 208
                 8889988888777652788*********98865 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.5
  zf-RING_10   2 sCvvCckLLvdPlepkekeCqHyvCrlCvgkkkklkp 38 
                  C vC + +++ ++ ++ + +    r+ +g+k+k+kp
  KKY21442.1 232 LCYVCETDVTELYADATGDKEGRKARKDKGEKEKVKP 268
                 6888888777777777666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1233  (0.0687713); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.52
# Mc/sec: 1715.36
//
Query:       KKY21443.1  [L=400]
Description: putative set domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-05   24.3   0.0    0.00019   21.8   0.0    2.2  1  SET       SET domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.1e-08   0.00019       2     168 ..      30     181 ..      29     182 .. 0.59

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.1e-08
                 CEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH..............HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   2 rGvfAtedIpkgeficeypeeiiltkdeadksele..............aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkas 86 
                 +G+ At+dI  g+++  ++ e + +  e+++++                 y   l+                               + + +++a + +
  KKY21443.1  30 FGISATKDILHGTVL--VQ-EQVASFKEPKEHFHGprgpywgvlleneeTYSHNLN------------------------------ILRRSWHKATQGQ 95 
                 578888888888888..34.345555555555555567656555555543333333..............................3334444444444 PP

                 HHHXTTTSX...XXHCCCCC..HCCCHEEEETEEEEEECCC.GTTGGGCEEXSSSSEEEEEEEE.TTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxx...xxxxxxxx..xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  87 skaesdlna...skpeagaf..saiagysidaralksgnga.gplarflNHsCdpNcnltvqnv.lrgprvavfAtrdIkkGeEltidY 168
                 ++++++l      +p+      ++ +  ++d  ++ +  ++ g  ++ + HsC pN++l  ++  +++  + v+ +++Ik+G  +ti+Y
  KKY21443.1  96 HDHFNSLIQrrdLDPL---VgtALRNAVYVDHPDQDMMQAIfGFEISKFDHSCVPNATLKHSYIsETEVLASVVVRKNIKAGSPITISY 181
                 4444444323222222...1233334444454555555555444458899*******777777799999999***************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2454.60
//
Query:       KKY21444.1  [L=212]
Description: hypothetical protein UCRPC4_g03707 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 1463.50
//
Query:       KKY21445.1  [L=210]
Description: putative family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      0.003   17.6   0.7     0.0083   16.1   0.7    1.8  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.7   4.6e-07    0.0083      14     100 ..      81     179 ..      72     209 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.6e-07
                    EEEETTEEEEEEE-SB-T.........TTSCB.-SSHHHHHHHHHHHHHHHHHHTT.--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSST..S-- CS
  Ribonuc_L-PSP  14 avkagnlvyvsGqlpldp.........etgelvegdveeqtrqalenlkavLaaag.aslsdvVkvtvFladiedfaevnevyaeafdelk..eaP 97 
                    av+ g ++ +sG +p+           ++++l   ++ +q+ qa+++  + +++ g    +dv++v++ +ad ++  ev  +   +f++++  +  
     KKY21445.1  81 AVRKGPFISISGLTPSPSssnnaaqqqQQQQLHLSNASAQAMQAMRQGIQSVKELGgKGAEDVIRVKISIADPKHIDEVGLAFWSLFANDEatGIG 176
                    899999******99987788888888788888888888898888877666666665156889****************999988888888644444 PP

                    EEE CS
  Ribonuc_L-PSP  98 ars 100
                    a++
     KKY21445.1 177 ATM 179
                    444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1532  (0.0854482); expected 358.6 (0.02)
Passed bias filter:                      698  (0.0389313); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 1437.63
//
Query:       KKY21446.1  [L=283]
Description: hypothetical protein UCRPC4_g03709 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.9e-60  202.1  18.1    8.4e-60  201.8  18.1    1.1  1  Peptidase_M50B  Peptidase M50B-like
     0.0056   16.0   0.1      0.016   14.5   0.1    1.7  2  Peptidase_M50   Peptidase family M50
  ------ inclusion threshold ------
      0.098   12.5   0.1       0.16   11.8   0.1    1.3  1  Peptidase_M41   Peptidase family M41
       0.86    7.6   5.8        1.3    7.0   5.8    1.2  1  Patched         Patched family


Domain annotation for each model (and alignments):
>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.8  18.1   1.9e-63   8.4e-60       3     199 ..      56     256 ..      54     257 .. 0.94

  Alignments for each domain:
  == domain 1  score: 201.8 bits;  conditional E-value: 1.9e-63
  Peptidase_M50B   3 aivlalvvlwnkpllrp....fkllvvffHElGHalaalLtGgrvkgielhsdesGvtvtrgpgglgqiltllaGYlgpallGlllillsas..g 91 
                     a+v+a+++lwn p++r+    fk+lv+ fHE+GHa++a++tGgrvk+i+l++ e+Gvt++rg  g+  ++tl+aGYlg++l+G+lli+++++   
      KKY21446.1  56 AYVVAIALLWNLPYVRWslwpFKMLVIAFHEFGHAITACCTGGRVKSISLDPREGGVTHMRG--GID-AITLPAGYLGSSLIGALLIFCGFNivA 147
                     799*********877744444*****************************************..*97.68********************98545 PP

  Peptidase_M50B  92 karlllvllvllllvllllvrnlfglvlllllgallllvlllaedelleflllflgvflllgsvrdi.ddlirrkapesDasqlakltgvpallw 185
                     ++++++vl+v++ll+l++ +++++++v++ll+++ll++++++++ e l+f++lf+gv+++l+sv+di ddli rk+++sDas +a+ +g ++++w
      KKY21446.1 148 SKAASIVLGVCFLLTLWWARKDWLTIVTILLAVGLLVACWFIEHAEPLRFVVLFIGVMSALYSVWDIcDDLILRKVNTSDASVFAQKYGGSSQCW 242
                     5588999***********************************************************99*************************** PP

  Peptidase_M50B 186 vvlwllvslaflal 199
                     +v+w+++slaf++l
      KKY21446.1 243 GVIWSIISLAFMVL 256
                     ***********987 PP

>> Peptidase_M50  Peptidase family M50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       0.7   3.1e+03      84      96 ..      14      26 ..       6      59 .. 0.59
   2 !   14.5   0.1   3.5e-06     0.016       8      33 ..      80     105 ..      77     113 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.7
                   XXXXXXXXXXXXX CS
                   xxxxxxxxxxxxx RF
  Peptidase_M50 84 pwqrllivlAGpl 96
                    +++ ++++AGp 
     KKY21446.1 14 QIAKRAVLAAGPN 26
                   5556666677762 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 3.5e-06
                    XXXXXXXXXXXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50   8 ilvvvHElGHflvAklcgvkveefsi 33 
                    +++++HE+GH+++A  +g +v+++s+
     KKY21446.1  80 LVIAFHEFGHAITACCTGGRVKSISL 105
                    6899*****************99875 PP

>> Peptidase_M41  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   3.7e-05      0.16      10      39 ..      81     108 ..      77     122 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.7e-05
                    HHHHHHHHHHHHHCCSSS-S-B--EES--T CS
  Peptidase_M41  10 lvAyHEaGHalvglllkeadpveKvtiiPR 39 
                    ++A+HE GHa+ + ++ +  +v+ +++ PR
     KKY21446.1  81 VIAFHEFGHAITACCTGG--RVKSISLDPR 108
                    79**********999865..5777777777 PP

>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.8   0.00029       1.3     682     725 ..     140     184 ..     132     186 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00029
     Patched 682 itvlvitls.ivsidigviGflslWgvdLDpismitiimsiGfsv 725
                 ++ + i+ s  +si +gv  +l+lW +  D ++++ti++++G  v
  KKY21446.1 140 FCGFNIVASkAASIVLGVCFLLTLWWARKDWLTIVTILLAVGLLV 184
                 677877665378******************************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       899  (0.0501422); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.51
# Mc/sec: 1659.84
//
Query:       KKY21447.1  [L=414]
Description: putative cytochrome p450 alkane [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-45  155.4   0.0    3.5e-45  154.6   0.0    1.3  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.6   0.0     2e-49   3.5e-45      66     417 ..      20     402 ..       5     410 .. 0.87

  Alignments for each domain:
  == domain 1  score: 154.6 bits;  conditional E-value: 2e-49
                 TCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHT CS
        p450  66 fsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgklsleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdl 164
                 ++++++++ l ++  pf+g g+ +++ + w ++R+++ p l  +  ++  ++ ++  +++ ++l  + +  +  d+ +ll  +++d++++ +Fga+ ++
  KKY21447.1  20 SVDYFRSPRLLKAGTPFLGPGLGTTSDHVWARHRQTVKPILDRH-HQKDIAFYDKHLDRFFNALGIDGEWTQLQDLNDLLGFFTMDTSTEYFFGANTNS 117
                 566777888888899***************************99.66789*******************999**************************9 PP

                 TTSSH................................HHHHHHHHHHHHHHHHCHHHHCCCCCH.HHTC.CSCHHHHHHHHHHHHHHHHHH.HHHHHHH CS
        p450 165 ledek................................lselvkaveelssllskssvqllllfp.llky.lptkllrklkeavkklkdlld.klieerr 228
                   ++k                                l e+ +a++e ++ + + ++ + ++++ + ++ +  + ++    a +++ d +  k+++   
  KKY21447.1 118 FVSKKirqdvsiwtmlwhlvtnrtthrwskpldgealLAEFGHAFDETMKYV-QGRYLMGKMYWlVDSWkFRVSCWKVNA-AIDYFVDRAArKIVTGVA 214
                 99999******************************99889999999999999.778889999986444415555555555.556555555505555555 PP

                 HCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTT....T-HHHHCCT-HH CS
        p450 229 etldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkr....eptyddlqklpy 323
                 ++ +++  +r+ +l  +l+         + +  +++ +v+ +l+aG dTt s+lswa+++L +nP+v  +lr+E+ e++g  +    e+t++ l + +y
  KKY21447.1 215 DQSSDT--KRYGLLEEILKGN-------SGNLIDVRDQVMHILIAGRDTTQSALSWAFALLGNNPSVFLRLRNEVLEHFGPEDdpkeEITFSTLRSCKY 304
                 555555..7888888888884.......45799**********************************************66556999************ PP

                 HHHHHHHHHHHSCSSTTEEEEESSSCEEET..T.......EEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS- CS
        p450 324 ldavikEtLRlhpvvplllpRevtkdvvir..g.......ylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekgnskrksfaflPFGaGpRnC 412
                 l+ +ikE+LRl++ v    pRe+  d+v++  g         ip+Gt+++ + y lhr+ +++ ++  eF+peR++ +k     k  ++lPF+aG+++C
  KKY21447.1 305 LQYTIKEVLRLYSSVQ--QPRETRVDTVLPvgGgadgtnpLAIPAGTTIMAPQYVLHRRTDHWgSDSGEFRPERWETKKL----KAREYLPFSAGAHSC 397
                 ***************9..9*********9644245568899*************************************65....79************* PP

                 TTHHH CS
        p450 413 iGerl 417
                 +G+++
  KKY21447.1 398 LGRKF 402
                 ***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2640.53
//
Query:       KKY21448.1  [L=725]
Description: putative glycosyl hydrolase family 20 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-28   99.7   0.1    2.3e-23   83.2   0.0    2.5  2  Glyco_hydro_20   Glycosyl hydrolase family 20, catalytic doma
    1.2e-07   32.6   0.0    2.8e-07   31.3   0.0    1.7  1  Glyco_hydro_20b  Glycosyl hydrolase family 20, domain 2


Domain annotation for each model (and alignments):
>> Glyco_hydro_20  Glycosyl hydrolase family 20, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   2.6e-27   2.3e-23       4     173 ..     176     338 ..     173     343 .. 0.85
   2 !   14.2   0.1   2.4e-06     0.021     199     335 ..     344     481 ..     337     500 .. 0.75

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 2.6e-27
  Glyco_hydro_20   4 RGlmlDvaRhflsveeikrliDamaaaKlNvlHwHltDdqgwrleikkyPeLtekgak.r.eskese....eelsg.fYtkedireiveYAaerg 91 
                     RG+mlD +Rh++++e + ++   m++ K N++H Hl+D+    + i +  +  e  a+ r +s++se    +++++  Yt+++ + i +  a+rg
      KKY21448.1 176 RGMMLDAGRHYYPPEFLVEMCSYMSFFKQNTFHVHLSDNLYNNVDIYSTERSLELYARfRlWSDNSElsglNKYKNeSYTQDQFEYIQSSCAARG 270
                     9**************************************99999995554433332220212222236688666666****************** PP

  Glyco_hydro_20  92 ieVipEidmPgHaraalkaypelvtkekaeqsveqsvqvevkesvlnptneetyeflekvldevaelfpseyvHiGGDEvkk 173
                     +++ipEi+ PgHa  ++++ pel+ +              ++ s+ln+++++t+  ++++    +  f+++ vHiG+DE+ +
      KKY21448.1 271 VTIIPEIEAPGHALVIVQWKPELGLS--------------DDLSLLNISHPDTIPTMKTIWGTFLPWFHTKSVHIGADEYTA 338
                     ************************98..............234699*********************************865 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2.4e-06
  Glyco_hydro_20 199 syfvkrvekilke.kgkkligWdeilekgk.asklakknttvqsWrelekeaaeklakkgydvilspadalYlDfgqekkeeeegleiatfasle 291
                     +yfv+++ ++++e  gk++ +W     +++  ++    n+t+q+W+  e++ + ++ +++y vi s+ da+Y+  + + +  + ++ + tf    
      KKY21448.1 344 NYFVNEMADYIAEtSGKSMRIWGTFPPNHTeGYNNIYTNVTIQHWEFFEDNPLFDYIENNYTVINSD-DAYYVVNKWSGSYPQIVNLTRTFHGSP 437
                     689999999987625777*****9988888668888899***********************99997.555554333333333344445577777 PP

  Glyco_hydro_20 292 kvynyepvakeaastslseeekkkkilGveaalWtEvirdsael 335
                     +   + p+  + ++ ++++    +++ G  aalW  +  +++ +
      KKY21448.1 438 SGGPWYPYIFDMTNSTNNPPRSTPLVPGEIAALWNDYGANATVY 481
                     778888888777775556666668**********9998555444 PP

>> Glyco_hydro_20b  Glycosyl hydrolase family 20, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   3.2e-11   2.8e-07      39     107 ..      77     154 ..      28     169 .. 0.71

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 3.2e-11
  Glyco_hydro_20b  39 llaevlk..aatgirlteakepgkgdirllalkd.......aelgaEgYrLavdedtitiegkdtdGlfyGvqTLrql 107
                      ++a +lk   ++++++  ++e+ +++i+l+  ++         + +EgY+L+v+ ++i+++g+++ G+++G+++++q 
       KKY21448.1  77 TFAGDLKssLSQKVEVAVKNEALPQSIFLTIGDAadyldaaGRETSEGYTLSVTSSGIVVTGASPLGAWWGTRSILQQ 154
                      444444422223344445555556666554444455777779999*****************************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.51
# Mc/sec: 4266.22
//
Query:       KKY21449.1  [L=349]
Description: putative methyltransferase domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-23   80.8   0.0    1.5e-22   80.2   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    9.2e-13   48.7   0.0    1.7e-12   47.9   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    9.5e-11   41.7   0.0    2.5e-10   40.4   0.0    1.7  1  Methyltransf_31  Methyltransferase domain
    2.7e-10   40.8   0.0    4.9e-10   39.9   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    7.6e-08   33.0   0.0    2.9e-07   31.1   0.0    2.0  1  Methyltransf_12  Methyltransferase domain
    9.5e-06   25.2   0.2    4.1e-05   23.1   0.0    2.1  3  Methyltransf_4   Putative methyltransferase
     0.0001   21.8   0.0    0.00019   20.9   0.0    1.4  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00095   19.3   0.0     0.0014   18.7   0.0    1.3  1  FtsJ             FtsJ-like methyltransferase
     0.0012   18.5   0.0     0.0025   17.4   0.0    1.5  2  MTS              Methyltransferase small domain
     0.0036   16.8   0.0     0.0072   15.8   0.0    1.4  1  CheR             CheR methyltransferase, SAM binding domain
  ------ inclusion threshold ------
      0.011   15.0   0.0      0.039   13.3   0.0    1.7  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.021   14.6   0.0      0.045   13.5   0.0    1.5  1  Methyltransf_16  Lysine methyltransferase
      0.029   13.7   0.0      0.074   12.3   0.0    1.7  2  Methyltransf_2   O-methyltransferase domain
      0.043   13.6   0.0       0.14   11.9   0.0    1.8  2  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.079   12.2   0.0       0.17   11.1   0.0    1.6  1  CMAS             Mycolic acid cyclopropane synthetase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   1.3e-25   1.5e-22      14     163 ..     110     266 ..      97     268 .. 0.82

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 1.3e-25
  Methyltransf_23  14 erllpklraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqi 105
                      + l+p   ++++vLdiG+GtGi++ +++ +    +v gvDlsp++ e +  +++ q++ +d  + +  + +fd+I+ r++l  ++d+ +++r +
       KKY21449.1 110 LYLAP-IAEPKNVLDIGTGTGIWAIEMASRHPesNVLGVDLSPVKTEAV--PSNCQFEIADVTDPWSYDTQFDFIHGRFLLTCFDDHKAVFRAA 200
                      44555.7899*****************6665457999*******99996..889999999999******************************* PP

  Methyltransf_23 106 atllkpgGylllseplasl.....kedrllldw.lylvpag..rhisffsarslkelleeaGlevv 163
                      +++l+pgGyl+l++++            +l++w   l++ag    +++  a s++++l+e G+ +v
       KKY21449.1 201 YENLAPGGYLELEDIGGFEfiddsGDGTALKKWnDTLFKAGlsMGRNWKCAWSYAQWLQELGFVDV 266
                      **************654334555467777888845666675544558889999*********9866 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   1.4e-15   1.7e-12       1      97 []     121     208 ..     121     208 .. 0.94

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 1.4e-15
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      vLd+G+GtG +++++a r ++++v+gvD+s+   ea+ +++       +f+ +d++d    d +fD+++ ++ l +++  d++++++ +++ L 
       KKY21449.1 121 VLDIGTGTGIWAIEMASRHPESNVLGVDLSPVKTEAVPSNC-------QFEIADVTDPWSYDTQFDFIHGRFLLTCFD--DHKAVFRAAYENLA 205
                      9*****************989***********999988877.......8********888999********9999998..678*********** PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      pgG
       KKY21449.1 206 PGG 208
                      **9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   2.1e-13   2.5e-10       4     113 ..     118     216 ..     115     262 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 2.1e-13
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkilee 96 
                       ++vlD+G+GtG  ++e+a++  p+++v G+D s+   e   +        n++Fe++d+++  +  + d +fD+i+ + +l ++ d +++++ 
       KKY21449.1 118 PKNVLDIGTGTGIWAIEMASR-HPESNVLGVDLSPVKTEAVPS--------NCQFEIADVTDpWS--Y-DTQFDFIHGRFLLTCFDDHKAVFRA 199
                      579****************55.799**********98777666........899********666..4.59*********************** PP

  Methyltransf_31  97 iervlkpggilliedpr 113
                      + ++l pgg+l +ed+ 
       KKY21449.1 200 AYENLAPGGYLELEDIG 216
                      ***********999987 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   4.1e-13   4.9e-10       1      94 [.     122     210 ..     122     212 .. 0.90

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 4.1e-13
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgG 92 
                      Ld+G+GtG+ a ++a+r   ++v+gvDls+  ++++     +++  ++f  ad+++    d +fD++  ++ l+ ++d++++++ ++  L pgG
       KKY21449.1 122 LDIGTGTGIWAIEMASRHpeSNVLGVDLSPVKTEAV-----PSN--CQFEIADVTDPWSYDTQFDFIHGRFLLTCFDDHKAVFRAAYENLAPGG 208
                      8**************77779**********998555.....443..77889*****656789******************************** PP

                      EE CS
  Methyltransf_11  93 ll 94 
                      +l
       KKY21449.1 209 YL 210
                      *8 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   2.5e-10   2.9e-07       1      99 []     122     210 ..     122     210 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 2.5e-10
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvvasnvlhhlkdirevldnirklL 93 
                      L+iG+GtG  + +++ ++p+++++gvD+sp       e   +       n+++e  d+ d  +   +fD ++  ++l +++d ++v++ +++ L
       KKY21449.1 122 LDIGTGTGIWAIEMASRHPESNVLGVDLSPVKT----EAVPS-------NCQFEIADVTDPWSYdTQFDFIHGRFLLTCFDDHKAVFRAAYENL 204
                      8********************************....33333.......34444444444333345**************************** PP

  Methyltransf_12  94 kpgGrl 99 
                      +pgG+l
       KKY21449.1 205 APGGYL 210
                      ****87 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.6   4.3e+03     137     169 ..      43      74 ..      29      77 .. 0.64
   2 ?   -2.3   0.0       2.2   2.6e+03      87     104 ..      88     105 ..      86     107 .. 0.83
   3 !   23.1   0.0   3.4e-08   4.1e-05       4      40 ..     120     156 ..     117     165 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.6
                     EESSCCCSCCTCHCHHCCCSSTTCCCCCCTTSS CS
  Methyltransf_4 137 erlskeeeleeeplsvlriatkyeqkvqskgke 169
                     e +s+e+ + +  +++ +i+t ++  vq+ g++
      KKY21449.1  43 EEISSEDVW-NTVTTTNNINTDEDDSVQEFGRT 74 
                     445555444.45666788888888888877776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.2
                     GGGGGGSTTSHHHHHHHH CS
  Methyltransf_4  87 krhhKrRllqpellkela 104
                       ++K Rl+ ++ ++ +a
      KKY21449.1  88 DAKEKARLTVQHHMTLYA 105
                     5689*****999999886 PP

  == domain 3  score: 23.1 bits;  conditional E-value: 3.4e-08
                     EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHH CS
  Methyltransf_4   4 vvleiGcGkGeflvalAkknPdknflGiEirvkvvak 40 
                      vl+iG+G G + +++A ++P+ n+lG++++   +++
      KKY21449.1 120 NVLDIGTGTGIWAIEMASRHPESNVLGVDLSPVKTEA 156
                     589*************************998766555 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.6e-07   0.00019     159     206 ..     115     163 ..      97     175 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.6e-07
        PrmA 159 vkegeevlDvGtGSGiLaia.aakLgakkvvavDiDevAvkvakeNael 206
                 + e ++vlD+GtG+Gi ai  a++   ++v++vD+ +v  ++  +N ++
  KKY21449.1 115 IAEPKNVLDIGTGTGIWAIEmASRHPESNVLGVDLSPVKTEAVPSNCQF 163
                 56779**************6377888999*********99999999875 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.2e-06    0.0014      21      77 ..     117     175 ..      78     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.2e-06
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS..HHH.TTEEEECS-CCCSSHHH CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..apl.pgvttiqgditdpetie 77 
                 + k+v+D+g ++G w+  ++ r +++++v++vDl p+  + + +++++  +d+tdp   +
  KKY21449.1 117 EPKNVLDIGTGTGIWAIEMASR-HPESNVLGVDLSPVktEAVpSNCQFEIADVTDPWSYD 175
                 3478************999999.567***********653445888888*****997666 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.1e-06    0.0025      32      74 ..     118     160 ..     108     181 .. 0.81
   2 ?   -4.1   0.0       8.2   9.8e+03     120     135 ..     195     210 ..     193     211 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.1e-06
                 CSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHH CS
         MTS  32 sgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesaken 74 
                  ++vlD+G+G+G+ ++++a+++pe +v  vd +    e+   n
  KKY21449.1 118 PKNVLDIGTGTGIWAIEMASRHPESNVLGVDLSPVKTEAVPSN 160
                 468**********************999999886655555555 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 8.2
                 HHHHHHHHHEEEEEEE CS
         MTS 120 eliaeAkeaLkegGeL 135
                 +++++A e L++gG L
  KKY21449.1 195 AVFRAAYENLAPGGYL 210
                 6789999999999976 PP

>> CheR  CheR methyltransferase, SAM binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     6e-06    0.0072     115     172 ..     156     211 ..     144     224 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6e-06
                 HHHTTEEEEE--TTT-SGGG--EEEEEE-SSGGGC-CHHHHHHHHHHHCCEEEEEEEE CS
        CheR 115 eikelvkFeklnllekksvlgklDvifcrnvliYfdeetqekvlerfaeklkpgglLl 172
                 ++ ++++Fe  ++++ +s+ +++D i  r +l  fd    ++v +  +e+l+pgg+L 
  KKY21449.1 156 AVPSNCQFEIADVTDPWSYDTQFDFIHGRFLLTCFDD--HKAVFRAAYENLAPGGYLE 211
                 57799******************************96..579**************95 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.2e-05     0.039      47     149 ..     117     210 ..     109     219 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.2e-05
                      -TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.TEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHH CS
  Ubie_methyltran  47 rgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkea 139
                      ++++vlD+ +Gtg +a+++++  + + +v ++D+++          k e++  n +f  a+  +    d  fD++   f l  + D++ +++ a
       KKY21449.1 117 EPKNVLDIGTGTGIWAIEMASR-HPESNVLGVDLSPV---------KTEAVPsNCQFEIADVTDPWSYDTQFDFIHGRFLLTCFDDHKAVFRAA 200
                      789***************9976.5667899***9984.........3344333888888998888889999*********************** PP

                      HHHEEEEEEE CS
  Ubie_methyltran 140 yrvlkpGGrl 149
                      y  l pGG l
       KKY21449.1 201 YENLAPGGYL 210
                      ********87 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.8e-05     0.045      46      90 ..     117     162 ..      98     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.8e-05
  Methyltransf_16  46 sklsvlELGsGtGlvGlavaellpeakviltDlee.llellkknie 90 
                      ++++vl++G GtG+  + +a+  pe +v+  Dl+   +e + +n +
       KKY21449.1 117 EPKNVLDIGTGTGIWAIEMASRHPESNVLGVDLSPvKTEAVPSNCQ 162
                      689**************************99998845677777765 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.2e-05     0.074      60     102 ..     115     157 ..      67     184 .. 0.82
   2 ?   -2.4   0.1         2   2.4e+03     183     207 ..     301     325 ..     292     325 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.2e-05
                     GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHH CS
  Methyltransf_2  60 leglkslvDvGGGtGalakaivsayPtikvivfDlpeVveaAk 102
                     + + k+++D+G GtG  a +++s +P+ +v+  Dl+ V ++A 
      KKY21449.1 115 IAEPKNVLDIGTGTGIWAIEMASRHPESNVLGVDLSPVKTEAV 157
                     55557899***************************99988875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2
                     HHHHHHCSS-----HHHHHHHHHHC CS
  Methyltransf_2 183 dlimlvqteGkeRteaeyeellsea 207
                      l m+v+t G   +e e  +l+ ea
      KKY21449.1 301 GLSMAVMTRGLRMSEDEVMKLVAEA 325
                     588999999*999999999998876 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012      0.14      60     107 ..     100     150 ..      75     182 .. 0.78
   2 ?   -1.6   0.0       1.6   1.9e+03      92     129 ..     303     343 ..     301     345 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
                 HHHHHHHH...HTT.--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESB CS
        PCMT  60 hmvalale...lle.lkkgarvLevGsGsGyltavlarlvgekgrvvsieri 107
                 hm  +a++   +l  + + ++vL++G+G+G+ +  +a     + +v++++ +
  KKY21449.1 100 HMTLYAMDgelYLApIAEPKNVLDIGTGTGIWAIEMASRHP-ESNVLGVDLS 150
                 55545544334677899999************999887644.4447777755 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.6
                 HHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC...SEEEE CS
        PCMT  92 arlvgekgrvvsierikelveeakrnlkkldle...nvivv 129
                 ++ v ++g+ +s + + +lv+eak  l  ++++   ++ivv
  KKY21449.1 303 SMAVMTRGLRMSEDEVMKLVAEAKPDLDDKNIHsysRIIVV 343
                 67788888889999999*******99999888855555555 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00014      0.17      63     105 ..     118     161 ..     106     242 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
                 T-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHHHHHH CS
        CMAS  63 GmtlLdiGcGWGslvrravery.dvkvvglTlSkeqaklakkrv 105
                  +++LdiG+G G  ++++++r+ + +v+g+ lS  +++ +  ++
  KKY21449.1 118 PKNVLDIGTGTGIWAIEMASRHpESNVLGVDLSPVKTEAVPSNC 161
                 5789***********9999987589********88877766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2397.55
//
Query:       KKY21450.1  [L=507]
Description: putative histidinol dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.1e-140  467.8   0.0   3.6e-140  467.6   0.0    1.0  1  Histidinol_dh  Histidinol dehydrogenase


Domain annotation for each model (and alignments):
>> Histidinol_dh  Histidinol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  467.6   0.0    2e-144  3.6e-140       7     408 ..      76     478 ..      70     479 .. 0.97

  Alignments for each domain:
  == domain 1  score: 467.6 bits;  conditional E-value: 2e-144
                    --HHHHHHHHHHHHHHHHHCHHHHHHHHHHCCSSSSGGCCEE-HHHHHHHHHCS-HHHHHHHHHHHHHHHHHHHCC--..--EEEEEECTTEEEEE CS
  Histidinol_dh   7 dseeveetvkeiledvreeGdealleytekFDkvkkleslrvseeeieealekldeelkealeeaaenirkfheaqke..seeevketepgvvlgq 100
                    ++++v + vk +++d+r++Gd+a+++y+ekFDk++ + s+r+s+++i++a+++++e++ + ++e ++n+r+f++aq++  + +   e +pgv+lgq
     KKY21450.1  76 STHTVPDVVKGVIQDIRNNGDAAVRQYSEKFDKWS-PPSFRLSQTDIDAAIAACPEQTIKDIKEVQHNVRTFAQAQRDsiK-DFELEIQPGVFLGQ 169
                    56778899************************775.678**************************************9533.33349********* PP

                    EEEE-SEEEEE---STT--CHHHHHHHHHHHHHT-SEEEEEE-SSGG.--HHHHHHHHHCT-SEEEE--HHHHHHHHHH--SSS---SEEE---SH CS
  Histidinol_dh 101 kvrpiervGlYvPgGkaaypStvlmnavpAkvAgvkeivvvtPpqdgkvnpavlaaaklagvdeiykvGGaqAiaalAyGtesipkvdkivGPGni 196
                    k +p++rvG Y+PgG+ ++ +++ m++++AkvAgvk+++ +tPp  g++ +a++aa++lag+deiy +GG+qA+aa+A Gte+ip+vd + GPGn+
     KKY21450.1 170 KNNPLNRVGAYIPGGRYPLLASAHMTILTAKVAGVKHVIGCTPPIAGEIPNATIAAMHLAGADEIYLLGGVQAVAAMAIGTETIPRVDFLAGPGNA 265
                    ************************************************************************************************ PP

                    HHHHHHHHHCTTBEES----S-EEEEEE-TTS-HHHHHHHHHHHHTT-TT-EEEEEES-HHHHHHHHHHHHHHHCC-TTHHHHHHHHCCH-EEEE- CS
  Histidinol_dh 197 yVaaAKrlvsgevgiDmiaGPsEvlviaDetadpefvAaDLlsqaEHdedaqavlvttseelaeaveeevekqleelprkeiaekslekqsaiilv 292
                    +Va+AKr+++gevgiD++aGP+E+lv+aDetadp ++A+DLlsqaEH++d+ avlvt+se++ ++  e v++ l+ lp++ ia++s+++ +++i++
     KKY21450.1 266 FVAEAKRQLFGEVGIDLFAGPTEILVVADETADPYTIAVDLLSQAEHGPDTPAVLVTNSEKVGKESIEWVDELLKILPTAPIASQSWQSFGEVIVA 361
                    ************************************************************************************************ PP

                    SSHHHHHHHHHHH--SEEEEESTTHHHHGGG--S-SEEEESTT--HHHHHHTSSS------TTGGGT---S-GGGGEEEEEEEEE.-HHHHHHHHH CS
  Histidinol_dh 293 edleeaielaneyApEHlelqvedpeellekiknaGaiflGeyspeslgDYaaGtnhvLPTsgtArfssglsvedFlkkisvqel.skealkelae 387
                    e+++ea+ +a+++A+EH+e+ +++p+e+l+k++n+Ga+flG+++++s+gD + GtnhvLPT ++Ar+++gl+v ++l+++++qe+ s+ea  +l++
     KKY21450.1 362 ENMDEAYLIADDIASEHVEILTKNPREALDKMTNYGALFLGHNTCVSYGDKCIGTNHVLPTRKAARYTGGLWVGKYLRTVTYQEVqSDEASGKLGQ 457
                    ************************************************************************************96778899**** PP

                    HHHHHHHHTT-HHHHHHHHHH CS
  Histidinol_dh 388 avetlAeaEgLeaHaeavkvR 408
                     + + A+aE++e Ha++ ++R
     KKY21450.1 458 LCGRSARAENFEGHARSGDLR 478
                    *****************9888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 3211.39
//
Query:       KKY21451.1  [L=427]
Description: putative malate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-46  156.6   0.0    9.9e-46  155.7   0.0    1.5  1  Ldh_1_C         lactate/malate dehydrogenase, alpha/beta C-te
    2.1e-42  144.6   0.0    4.1e-42  143.6   0.0    1.5  1  Ldh_1_N         lactate/malate dehydrogenase, NAD binding dom
     0.0032   16.5   0.0     0.0048   16.0   0.0    1.2  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
  ------ inclusion threshold ------
      0.096   13.1   0.0        0.3   11.5   0.0    1.9  1  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai


Domain annotation for each model (and alignments):
>> Ldh_1_C  lactate/malate dehydrogenase, alpha/beta C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.7   0.0   2.2e-49   9.9e-46       1     167 []     257     423 ..     257     423 .. 0.97

  Alignments for each domain:
  == domain 1  score: 155.7 bits;  conditional E-value: 2.2e-49
                 THHHHHHHHHHHHHHHTS-GGGEE--EEBSSSTETTEEHHHHHTTSTTSTHHHHHHHHHHHHHHHHHHHHHHTTSSSS-HHHHHHHHHHHHHHHTTHTE CS
     Ldh_1_C   1 TtLDivRaktflaekagvtprsvkvtViGgHsgvtiipllsqvkellklsekqleeliervqnggdevvkakkGagsatlsmAvAgakfveallrdtke 99 
                 TtLD+vRa+ f++e +g +p+++++tV+GgHsgvti+pl+sq+ +  +++ ++l++l++r+q+ggdevvkak+GagsatlsmA+Aga+f+e+ll++ ++
  KKY21451.1 257 TTLDVVRASRFVSEIKGSDPADENITVVGGHSGVTIVPLISQSGH-GDIKGEKLDALVNRIQFGGDEVVKAKDGAGSATLSMAMAGARFAESLLKASQG 354
                 9******************************************99.99*************************************************** PP

                 EEEEEEEEESCCCE...CCSSEEEEEEEEEEETTEEEEE-------HHHHHHHHHHHHHHHHHHHHHHCCH CS
     Ldh_1_C 100 ilsagvyldgevgl...kdqeieyfsvPvvlgknGvekvleilklndfeeekleksvkeLkkeiekglefv 167
                 +  +gv+++  v++   kdq+i++f+++v lg +Gv+++l i++ n++e+  lek+   Lk +i kg++fv
  KKY21451.1 355 E--KGVIEPTFVDSplfKDQGIDFFASKVELGPDGVQNILPIGNVNAEEQALLEKCLGDLKGNIAKGVKFV 423
                 *..********996223677************************************************996 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.6   0.0   9.2e-46   4.1e-42       2     141 .]     112     255 ..     111     255 .. 0.98

  Alignments for each domain:
  == domain 1  score: 143.6 bits;  conditional E-value: 9.2e-46
                 EEEEETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHHHHHHHHHHHHHCHCCSTS-EEEEE..SSGGGGTTESEEEE--S-SS-TTTTHHHHHHHHHHHH CS
     Ldh_1_N   2 kvavvGaaGgiGqslalllankkladelaLlDiakekleGvaldlshistflsvkvkvse..keeealkdadvvvitagvprkpGetRddLlkvNakIv 98 
                 kvav+GaaGgiGq+l+ll++ ++ +++laL+Di+    +Gva+d+shi+t ++vk++ +   + +e+l++a++v+i+agvprkpG+tRddL+++Na+Iv
  KKY21451.1 112 KVAVLGAAGGIGQPLSLLMKLNPRVSQLALYDIR--GGPGVAADVSHINTKSTVKGYDPTpsGLKECLSGAEIVLIPAGVPRKPGMTRDDLFNTNASIV 208
                 9*********************99999*******..99*******************988889************************************ PP

                 HHHHHHHHHHTTTSEEEE-SSSHH....HHHHHHHHHHTS-GGGEEE CS
     Ldh_1_N  99 keiveaiakvapnaivlvvsNPvd....iltevlkkasglpkkrvig 141
                 +++++a a+ apna +l++sNPv+    i +ev+k ++ +++kr++g
  KKY21451.1 209 RDLAKAAADAAPNANLLIISNPVNstvpICAEVYKSKGVYNPKRLFG 255
                 *********************************************98 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.1e-06    0.0048       1      92 [.     114     204 ..     114     225 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.1e-06
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrlee.lkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvn 92 
                 +v+G+aG +G+ l + L++l++ + ++  +D+r +p +  ++s++n+k++++g     + l+e l g+++v+  a++    g++++d + + n
  KKY21451.1 114 AVLGAAGGIGQPL-SLLMKLNPrVSQLALYDIRGGPGVAADVSHINTKSTVKGYDPTPSGLKECLSGAEIVLIPAGVPRKPGMTRDD-LFNTN 204
                 59*********98.678888887******************************9999*******************99999977766.55555 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.7e-05       0.3       1      52 [.     112     161 ..     112     188 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.7e-05
                     EEEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTE CS
  Semialdhyde_dh   1 kvaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavkaleegk 52 
                     kva++Ga G +Gq l  l++ +p v+ ++l+  +   G  +a+ v+++++++
      KKY21451.1 112 KVAVLGAAGGIGQPLSLLMKLNPRVSQLALYDIRG--GPGVAADVSHINTKS 161
                     7**************************99998776..666665555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 3649.47
//
Query:       KKY21452.1  [L=441]
Description: hypothetical protein UCRPC4_g03715 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.015   16.0   0.4      0.015   16.0   0.4    3.8  3  U1snRNP70_N  U1 small nuclear ribonucleoprotein of 70kDa MW N


Domain annotation for each model (and alignments):
>> U1snRNP70_N  U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   3.3      0.42   7.5e+03      79      79 ..      63      63 ..      25     106 .. 0.54
   2 ?   16.0   0.4   8.2e-07     0.015      34      83 ..     184     249 ..     169     256 .. 0.77
   3 ?   -1.9   3.3       0.3   5.4e+03      50      82 ..     334     366 ..     299     392 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.42
  U1snRNP70_N 79 e 79
                 e
   KKY21452.1 63 E 63
                 1 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 8.2e-07
  U1snRNP70_N  34 kkitGvaaflselke................deeeqeppektetkeekkererkekkekkeeklee 83 
                  ++  Gva++l++ +                  +  ++p e+te+k+++++r+++e++++++e++e+
   KKY21452.1 184 HNAGGVADMLEAPAApagvlritgeapapkaARSSPKPIEPTESKKQRQARKKREEQKARAEEAEK 249
                  56778888886665566666667777777665667778888************9999999999876 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.3
  U1snRNP70_N  50 eeeqeppektetkeekkererkekkekkeekle 82 
                   ++qe++++t +++     e+++ ++ ++++l 
   KKY21452.1 334 VQKQESKSTTPAWASSALSEEEQLRQLQQQELD 366
                  455666666666666666666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1738  (0.0969379); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.38s 00:00:01.18 Elapsed: 00:00:00.52
# Mc/sec: 2557.41
//
Query:       KKY21453.1  [L=589]
Description: putative c-type cyclin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-07   28.8   0.0    2.3e-06   27.4   0.0    1.8  2  Cyclin_N  Cyclin, N-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.3e-10   2.3e-06      10     124 ..      33     160 ..      26     163 .. 0.78
   2 ?   -4.1   0.0      0.69   1.2e+04      74      87 ..     209     222 ..     204     227 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.3e-10
                 HCHTS-STTCTTCTSSS-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHHHHHT...... CS
    Cyclin_N  10 elkflpkpdyldqqpelnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkledlvyit...... 102
                 +++ + ++   ++++e  ++ R   i+w+ +v + ++l  +t+ +a++y+++f   +  ++      +a++L+ A+K+e++   k +d+ +++      
  KKY21453.1  33 TIQRCLQQTGTSSSKE--ENIRLLGITWIDNVRRALRLPVRTFDTAAVYYHKFRLIHPDSEFAYVDAAAAALFTACKIEDT-LKKSRDILCAAynlkap 128
                 4544444455444444..699**********************************66666667777799*********888.89999988888899999 PP

                 .......TT...SS-HHHHHHHHHHHHHHTTT CS
    Cyclin_N 103 .......de...afteeeilemErliLetLnf 124
                        d+       ++i+ +Erl+Le+  f
  KKY21453.1 129 psdqlspDDavfEHHSRTIIGLERLMLEASSF 160
                 99999984443444567899999999987665 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 0.69
                 HHHHHHHHHHHHHH CS
    Cyclin_N  74 qlvgatcLllAaKv 87 
                  +++ +cL l++++
  KKY21453.1 209 PTMAFACLELSSRL 222
                 56889999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.51
# Mc/sec: 3455.88
//
Query:       KKY21454.1  [L=808]
Description: putative dna repair protein rad26 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-47  159.3   0.0    8.8e-47  158.6   0.0    1.3  1  DUF3636     Protein of unknown function (DUF3636)
    9.1e-07   27.8   4.2    0.00012   20.8   1.6    2.5  2  LCD1        DNA damage checkpoint protein
     0.0053   16.3   9.0     0.0094   15.4   9.0    1.3  1  Golgin_A5   Golgin subfamily A member 5
  ------ inclusion threshold ------
        0.1   11.5   9.4       0.18   10.6   9.4    1.3  1  Spc7        Spc7 kinetochore protein
       0.11   12.5  10.6       0.25   11.4  10.6    1.5  1  Rootletin   Ciliary rootlet component, centrosome cohesion


Domain annotation for each model (and alignments):
>> DUF3636  Protein of unknown function (DUF3636)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.6   0.0   2.5e-50   8.8e-47       1     148 []     546     702 ..     546     702 .. 0.99

  Alignments for each domain:
  == domain 1  score: 158.6 bits;  conditional E-value: 2.5e-50
                 -HHHHHHHHHHHHHHHS-----HHHHHHSS-HHHHHHHTSTTS-HHHHHHHHHHGGGG--SS-SS----HHHHHHHHHHHHHHHHHHHHHS--T....T CS
     DUF3636   1 dvtecLelLylaAlgclssseaierFWrlieldfvllmLskkqplediilmLelLstSvlpdsfGpisseeedqkavekaiidrvsnlLteepradege 99 
                 ++t+cLelL  +A++cl+s++ i  FW++++++f+l+mL+++qp+ di+l ++lLstS++p++fG i+  +++q+++ek+ i+r+++lL+e pr+dege
  KKY21454.1 546 NCTDCLELLLDIAYACLHSNDCIDLFWQHMDYEFILIMLNSSQPIPDITLNISLLSTSIRPTTFGVIKPLADSQSNIEKHCIERLTFLLWEIPRVDEGE 644
                 689************************************************************************************************ PP

                 S-TTSHHHHHHHHHHHHHHHHHHHSH.........HHHHHHHH-SSHHHHHHHHHHHH CS
     DUF3636 100 akvteaeilelrleaLrvLtafarsp.........fgslalashdsaigRlvrvLsde 148
                 +++++++i+++r+e++++L ++  s+         +gs+ la+h+ aigRlvr+++de
  KKY21454.1 645 EPYSSEQISQFRVEVMSLLCELGLSSlhphetngsHGSQLLAEHPAAIGRLVRSIYDE 702
                 ******************************************************9986 PP

>> LCD1  DNA damage checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   1.6   3.2e-08   0.00012      13     141 ..     240     430 ..     193     451 .. 0.65
   2 !    6.9   0.0   0.00052       1.9     581     609 ..     769     797 ..     713     800 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 3.2e-08
                 CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCHHTTTTTT.HHHH------TT---SSS--............................ CS
        LCD1  13 kekeleklknskkqlkesheeelekLkkevqkleDekkFlenElrslset.ksqaskksaeedtdnsssvs............................ 82 
                  +++l+ lk+  +++  +h+ e+e+ ++e +++ +e++Fl+ +l +  ++ k+ + +  ++ d +n+s +s                            
  KKY21454.1 240 YDRQLAALKKAAEEEAAKHKAEVEAAREESERVATENRFLQQDLAEEAKKaKEIRHNLRTKPDDNNNSPLStpkktrtlayrdgfddddirmvspskga 338
                 345599************************************999888863233333333333333333335766677777777777777777777666 PP

                 THHHHHHHHH.............................................HHHTSTTT--.TTHHHHHHHHH---SSSTTTTTTTTSS--- CS
        LCD1  83 kKkRKieestaedaslsls....................................lkkkviklqk.etslffdslllhkilGsdlttleiLskikl 141
                 +K +K++ +  ++     +                                    l ++ ++l+  +   f++ ++++   G++ t+le+  + ++
  KKY21454.1 339 RKSKKTTPTAGHKR----KrqalmdspvaplvletrggdfaashvaadqppqetvLPSHALELERtRGLKFLQRVYNFHPSGGEETVLEVFTQYSF 430
                 55555544433322....023344555566666666777777777777754444455555555558888999999999999999999999887666 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00052
                 H-------HHHHHHHTTTT---HHHHHHH CS
        LCD1 581 levkyeeetvelAreiLescvslEeaDnL 609
                 +e    +et  +A e+Le+++++Eea++L
  KKY21454.1 769 MEELITDETCIMAHEMLEQVITPEEAEAL 797
                 56666789999****************98 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   9.0   2.6e-06    0.0094      42     153 ..     191     295 ..     180     314 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.6e-06
   Golgin_A5  42 stalsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsr 140
                 ++al a+++el  erd l+++l+++n+++++ r e+  + a+q + ++++  ql+ l+++ eee ++++   ae+e  +ee +++  e++  +++l   
  KKY21454.1 191 AQALRAQIQELLLERDKLTKDLHAANSSVQTQRGEISIIRANQAKASRTYDRQLAALKKAAEEEAAKHK---AEVEAAREESERVATENRFLQQDL--- 283
                 56788999**************************************************99998877665...566666666666666655333333... PP

   Golgin_A5 141 ikdrekeieklrn 153
                   +  k+ +++r+
  KKY21454.1 284 -AEEAKKAKEIRH 295
                 .333333333334 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   9.4   5.1e-05      0.18     140     268 ..     201     329 ..     193     335 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.1e-05
        Spc7 140 LkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekiee 238
                 L  + ++  ++l + ++ ++ q+ e++ +  +  +   +  ++l+ l++aaee ++  k+e+e++ree +++ +e + ++++lae  ++ +e++ ++ +
  KKY21454.1 201 LLLERDKLTKDLHAANSSVQTQRGEISIIRANQAKASRTYDRQLAALKKAAEEEAAKHKAEVEAAREESERVATENRFLQQDLAEEAKKAKEIRHNLRT 299
                 4445567778899999999**********999999******************99999************************************99988 PP

        Spc7 239 lkeqkseleeeiaeaervleeckgwsesev 268
                   +  ++    + ++ r+l  + g++++++
  KKY21454.1 300 KPDDNNNSPLSTPKKTRTLAYRDGFDDDDI 329
                 777776666666666666666666666666 PP

>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  10.6   6.9e-05      0.25      10     131 ..     183     303 ..     178     310 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.9e-05
   Rootletin  10 aqqrqaqLvskLqaKvlqYkkrcseleqrllektselektkltlllssareleeeesadle.ealakLeeErqrseklaqvnslLreqleearqaneaL 107
                 a+  q  + ++L+a++++      +l + l++ +s +++++++++  +a++ + ++++d +  al+k  eE   ++k +++ +  re+ e   ++n+ L
  KKY21454.1 183 AEPDQGGIAQALRAQIQELLLERDKLTKDLHAANSSVQTQRGEISIIRANQAKASRTYDRQlAALKKAAEEE--AAKHKAEVEAAREESERVATENRFL 279
                 677888899******************************999888866666666665554313334444443..44445788899************** PP

   Rootletin 108 tedlqkltkdwerlreeleqkeke 131
                 ++dl    k+ +++r++l++k ++
  KKY21454.1 280 QQDLAEEAKKAKEIRHNLRTKPDD 303
                 *****************9999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1530  (0.0853366); expected 358.6 (0.02)
Passed bias filter:                      725  (0.0404373); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.51
# Mc/sec: 4722.88
//
Query:       KKY21455.1  [L=419]
Description: putative phosphatidate cytidylyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-80  269.6  26.6    4.6e-80  269.2  26.6    1.1  1  CTP_transf_1  Cytidylyltransferase family
  ------ inclusion threshold ------
      0.021   14.9   1.9        6.8    6.7   0.0    2.8  3  DUF389        Domain of unknown function (DUF389)
       0.28   11.2   0.1       0.28   11.2   0.1    2.5  2  DUF5345       Family of unknown function (DUF5345)


Domain annotation for each model (and alignments):
>> CTP_transf_1  Cytidylyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.2  26.6   7.7e-84   4.6e-80       2     266 .]      33     359 ..      32     359 .. 0.99

  Alignments for each domain:
  == domain 1  score: 269.2 bits;  conditional E-value: 7.7e-84
                   HHHHHHHHHHHHHHHTTTSH.HHHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHH....HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHH---. CS
  CTP_transf_1   2 qRvitalvlilivliilllgglvflllvavvvilalkElirlvrlkkrekrllll.llslvlllllllflylesliallklvlllvlvllllvlkvl 97 
                   +R+i+++++i+ ++++++ g++++++++++++++ +kE+i+++++ +++++l ++  l++++l  +++fly+es+i ++k++lll++vll +++   
    KKY21455.1  33 TRTIWTFIMIAGFFVAMFSGHVYIIAVITAIQVISFKEIIAIANVPSKARNLRFTkSLNWYFLASTMYFLYGESIIYYFKHILLLDKVLLPFAT--- 126
                   7****************************************************************************************99988... PP

                   ..HHHHHHHHHHHHHHHHHTHHHH............................TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---B-S-TT CS
  CTP_transf_1  98 kskskklervilallallyvvlll...........................qslllienikeglllvllllalvvaaDigaYffGklfGktkllpki 167
                         ++r+i+++l+++++v+++                           q++++++n +eg+++++l+ +lv+++Di+aY++G++fG+t  l+k+
    KKY21455.1 127 ------HHRFISFMLYVMGFVFFVatlekghyrfqftqfawthmalyfvvvQAHFIMNNVFEGMIWFFLPASLVITNDIFAYVCGITFGRT-QLIKL 216
                   ......8************************************************************************************.***** PP

                   S---BHHHHHHHHHHHHHHHHHHHHHHHCTS............................................---TTSHHHHHHHHHHHHHHHH CS
  CTP_transf_1 168 SPkKTveGfigGlvaavvvglllalvlskal............................................alsllhllllslllslvavfGD 220
                   SPkKTveGf+g++++++++g++++++l++++                                            a++++h+l++++++sl+a+fG+
    KKY21455.1 217 SPKKTVEGFVGAWICTIIFGFFMTNLLMRYKyficpvndlganvftslectpnpvfialpyhlpawihidhtfmiAPMQFHILVFATFASLIAPFGG 313
                   *****************************99****************************************************************** PP

                   HHHHHHHHHHT-SSS-S-SSSSS-HHHHHHHHHHHHHHHHHHHHHH CS
  CTP_transf_1 221 LveSglKRafgiKDsGkliPGhGGilDRlDsllfaapvvylllelf 266
                   +++SglKR+f+iKD+G++iPGhGG++DR+D++++++ ++yl++++f
    KKY21455.1 314 FFASGLKRTFKIKDFGDSIPGHGGMTDRMDCQFIMGLFAYLYFQSF 359
                   *******************************************987 PP

>> DUF389  Domain of unknown function (DUF389)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0011       6.8      63     110 ..      29      79 ..      15     111 .. 0.81
   2 ?   -2.1   0.1      0.62   3.7e+03      38      50 ..     134     146 ..     113     176 .. 0.63
   3 ?    6.7   0.1    0.0012       6.9       8      50 ..     197     239 ..     194     276 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0011
      DUF389  63 semlsrtepn...lvdllvAlasGaagalallsgnssslvGvaIaaaLlPP 110
                 +   +rt ++   + +++vA++sG + ++a++++ +      +Ia+a +P 
  KKY21455.1  29 QSFITRTIWTfimIAGFFVAMFSGHVYIIAVITAIQVISFKEIIAIANVPS 79 
                 4556666666777899***************99988777777777777775 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.62
      DUF389  38 lallvgflfglll 50 
                 +  ++gf+f++++
  KKY21455.1 134 MLYVMGFVFFVAT 146
                 3455666666433 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0012
      DUF389   8 gpilaiafglvigdrkllrrglknlliglllallvgflfglll 50 
                 + i+a   g++ g+++l++ + k+++ g++ a +++++fg+++
  KKY21455.1 197 NDIFAYVCGITFGRTQLIKLSPKKTVEGFVGAWICTIIFGFFM 239
                 5689999*************************99999999554 PP

>> DUF5345  Family of unknown function (DUF5345)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   4.7e-05      0.28       8      74 ..       3      68 ..       1      71 [. 0.92
   2 ?   -1.7   1.5       0.5     3e+03      56      73 ..     158     175 ..     155     177 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.7e-05
     DUF5345  8 lDqlievetPsleeleqllaeekerkrkrlrrElllFlliAllilsllllalvqapalfiviQvial 74
                +Dq+i + +P++ + +  ++e +++k++   r +  F++iA +++++ ++  v  +a++ +iQvi++
  KKY21455.1  3 MDQNIVDRVPQKLSGKPDVSEYEKKKQSFITRTIWTFIMIAGFFVAM-FSGHVYIIAVITAIQVISF 68
                99*999999************************************86.67888999********986 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.5
     DUF5345  56 llalvqapalfiviQvia 73 
                  +a++++  +f+v+Q+ +
  KKY21455.1 158 QFAWTHMALYFVVVQAHF 175
                 578999999******965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       990  (0.0552178); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2841.18
//
Query:       KKY21456.1  [L=742]
Description: hypothetical protein UCRPC4_g03719 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.55
# Mc/sec: 4053.27
//
Query:       KKY21457.1  [L=822]
Description: putative pentatricopeptide repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-15   57.1   0.0    2.4e-15   56.0   0.0    1.6  1  LSM              LSM domain
      8e-08   32.4   0.1     0.0041   17.3   0.0    4.7  5  PPR_2            PPR repeat family
      0.002   17.5   0.0     0.0071   15.7   0.0    1.9  2  PPR_long         Pentacotripeptide-repeat region of PRORP
     0.0036   17.8   0.2       0.36   11.4   0.1    3.2  3  TPR_19           Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.035   14.2   0.0      0.083   13.0   0.0    1.6  1  SM-ATX           Ataxin 2 SM domain
      0.045   14.0   3.2          1    9.7   0.1    4.0  4  PPR              PPR repeat
      0.074   13.1   0.0         58    3.9   0.0    3.7  3  PPR_3            Pentatricopeptide repeat domain
        5.8    7.6  14.7          1   10.0   4.7    2.4  2  FXMRP1_C_core    Fragile X-related 1 protein core C terminal


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   1.1e-18   2.4e-15       3      65 ..      15      77 ..      14      79 .. 0.94

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 1.1e-18
                HHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTETEEEEEEEEEEEGGGEEEE CS
         LSM  3 lkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkkekrklglvliRGnnivli 65
                l   +++ ++velkng++l G L+++D +mNl L++v+ t++++++  +l +v++RGnn++ +
  KKY21457.1 15 LTAAQGHPMLVELKNGETLNGHLVNCDTWMNLTLKEVVQTSPEGNKFFRLPEVYVRGNNVRKL 77
                67789***************************************99999***********965 PP

>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0033       7.4       5      35 ..     313     343 ..     309     344 .. 0.94
   2 ?    0.7   0.0      0.27   6.1e+02      13      33 ..     356     376 ..     353     384 .. 0.86
   3 ?   -0.1   0.0      0.48   1.1e+03       7      34 ..     383     413 ..     380     426 .. 0.70
   4 !   17.3   0.0   1.8e-06    0.0041       9      48 ..     459     498 ..     453     500 .. 0.91
   5 ?   -1.8   0.0       1.6   3.7e+03      35      48 ..     562     575 ..     540     576 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0033
       PPR_2   5 tyNtlIsglckkgkveeAfklfneMkkrgle 35 
                  +N++ +g++k+ ++  A + +++M++ g++
  KKY21457.1 313 GWNHVVAGMLKETQYALAAEKLQQMRSMGIP 343
                 59*************************9985 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.27
       PPR_2  13 lckkgkveeAfklfneMkkrg 33 
                 l  +g++ eAf+ ++e  krg
  KKY21457.1 356 LIGAGEYAEAFEAMQEINKRG 376
                 557899***********9997 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.48
       PPR_2   7 NtlIsgl.c..kkgkveeAfklfneMkkrgl 34 
                 Nt++s l +  ++ ++e   +l++eM++ g+
  KKY21457.1 383 NTILSLLeAtsEDYNSEITTRLWEEMVSPGF 413
                 555555532225556788899*****98665 PP

  == domain 4  score: 17.3 bits;  conditional E-value: 1.8e-06
       PPR_2   9 lIsglckkgkveeAfklfneMkkrglePnsyTysilikgl 48 
                 l + +   g++e A+ ++  Mk+ gle +++T  +l++ +
  KKY21457.1 459 LFDLYISSGDIEGAINFLCAMKESGLEASEFTVRSLVDLC 498
                 6788999****************************99743 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 1.6
       PPR_2  35 ePnsyTysilikgl 48 
                 +Pn  +y  l+k++
  KKY21457.1 562 PPNLRSYFLLFKAC 575
                 7999*******994 PP

>> PPR_long  Pentacotripeptide-repeat region of PRORP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.2e-06    0.0071      73     171 ..     400     499 ..     364     532 .. 0.80
   2 ?   -2.0   0.0      0.83   1.9e+03     124     143 ..     564     583 ..     542     624 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.2e-06
                 HHHHHHHHHHHTT.----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCT----HHHHHHHHHHH CS
    PPR_long  73 rgfevfeamkakg.vspnEatvtalarlaaakedgdlafelvkemekagvsPrLRsyaPaLaayckagdadkaleveehlkasgveleEaelaaLLkvs 170
                  + + +e+m + g  +p+  +   +  +a+ ++d  la ++ +++++    P L + +P+   y  +gd++ a++    +k sg+e  E  + +L +++
  KKY21457.1 400 ITTRLWEEMVSPGfLNPSSGVCHKILIMAVRARDLALASKVFQHLAARVDVPSLDACEPLFDLYISSGDIEGAINFLCAMKESGLEASEFTVRSLVDLC 498
                 4567788888855267888899999999*****************999889********************************************9997 PP

                 H CS
    PPR_long 171 a 171
                  
  KKY21457.1 499 G 499
                 4 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.83
                 -HHHHHHHHHHHHHTT-HHH CS
    PPR_long 124 rLRsyaPaLaayckagdadk 143
                  LRsy  +  a ++++d++ 
  KKY21457.1 564 NLRSYFLLFKACRQLQDLQA 583
                 55555444444444444332 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   0.00016      0.36       2      52 ..     322     373 ..     321     378 .. 0.89
   2 ?    2.5   0.0     0.093   2.1e+02      29      48 ..     457     476 ..     428     483 .. 0.75
   3 ?   -2.1   0.0       2.7     6e+03       4      42 ..     542     582 ..     540     585 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
      TPR_19   2 laegdyaeAlalleqalqe.dpknaearllLAeallalgqldeAealLdalp 52 
                 l+e +ya A++ l+q+ +   p   ++ ++ A +l+ +g+++eA ++++++ 
  KKY21457.1 322 LKETQYALAAEKLQQMRSMgIPVFRWVDIAFAHCLIGAGEYAEAFEAMQEIN 373
                 78889***********6555999*********************99999886 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.093
      TPR_19  29 llLAeallalgqldeAealL 48 
                   L ++++++g+++ A++ L
  KKY21457.1 457 EPLFDLYISSGDIEGAINFL 476
                 55899***********9988 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.7
      TPR_19   4 egdyaeAlalleq..alqedpknaearllLAeallalgqld 42 
                 ++d+ +  + + q  ++  +p n++   lL +a+ +l +l+
  KKY21457.1 542 AKDFVSIKEVFDQysIYCSSPPNLRSYFLLFKACRQLQDLQ 582
                 56677777777775556669999999999999999998876 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.7e-05     0.083       7      51 ..      14      56 ..      12      81 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.7e-05
                HHHTTTTSEEEEEETTS-EEEEEEEEE-T..T--EEEEEEEETTS CS
      SM-ATX  7 lltslvGkevevtvknGevyeGifstvslekdfsvvLkmarkvkk 51
                llt+  G++  v++knGe+  G +  +++   ++++Lk + ++++
  KKY21457.1 14 LLTAAQGHPMLVELKNGETLNGHLVNCDT--WMNLTLKEVVQTSP 56
                7999*************************..*********99998 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.25   5.5e+02       3      31 .]     314     342 ..     313     342 .. 0.94
   2 ?    0.1   0.1      0.56   1.2e+03      12      30 ..     358     376 ..     353     377 .. 0.84
   3 ?   -3.0   0.0       5.3   1.2e+04      22      29 ..     404     411 ..     403     413 .. 0.77
   4 ?    9.7   0.1   0.00046         1       6      31 .]     459     484 ..     459     484 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.25
         PPR   3 ynslIsgycknGkleeAlelfkeMkekGi 31 
                 +n ++ g  k+ ++  A e +++M+++Gi
  KKY21457.1 314 WNHVVAGMLKETQYALAAEKLQQMRSMGI 342
                 999999999999999***********997 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.56
         PPR  12 knGkleeAlelfkeMkekG 30 
                  +G++ eA+e ++e+ ++G
  KKY21457.1 358 GAGEYAEAFEAMQEINKRG 376
                 579999*******999988 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 5.3
         PPR  22 lfkeMkek 29 
                 l++eM++ 
  KKY21457.1 404 LWEEMVSP 411
                 89***975 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.00046
         PPR   6 lIsgycknGkleeAlelfkeMkekGi 31 
                 l + y ++G++e A+ +++ Mke+G+
  KKY21457.1 459 LFDLYISSGDIEGAINFLCAMKESGL 484
                 5689********************96 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.037        83       2      46 ..     298     342 ..     280     343 .. 0.91
   2 ?    3.9   0.0     0.026        58      12      40 ..     415     443 ..     403     455 .. 0.77
   3 ?    0.8   0.0      0.23   5.1e+02      18      61 ..     456     499 ..     447     500 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.037
       PPR_3   2 ilremerkgikldvvtYthLLtayanagnkklalevlermkkkgi 46 
                 +l++me++ i l+  +++h   ++ +   + la e l++m+  gi
  KKY21457.1 298 VLNKMEQRWISLNPDGWNHVVAGMLKETQYALAAEKLQQMRSMGI 342
                 788999999999999999999999999999999999999998877 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.026
       PPR_3  12 kldvvtYthLLtayanagnkklalevler 40 
                  ++   +  +L  +++a+++ la++v++ 
  KKY21457.1 415 NPSSGVCHKILIMAVRARDLALASKVFQH 443
                 55556688899999*************86 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.23
       PPR_3  18 YthLLtayanagnkklalevlermkkkgikPtvvtyNailgvig 61 
                 +  L  +y+  g+ + a + l  mk+ g++ +  t  ++  ++g
  KKY21457.1 456 CEPLFDLYISSGDIEGAINFLCAMKESGLEASEFTVRSLVDLCG 499
                 6778899999******************9877666666666665 PP

>> FXMRP1_C_core  Fragile X-related 1 protein core C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.7   0.00045         1      44     117 ..     105     178 ..      88     197 .. 0.72
   2 ?    2.6   2.3     0.089     2e+02      57     106 ..     707     764 ..     678     794 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00045
  FXMRP1_C_core  44 stDeesgessssslggsrsysgRGrGrRGagatsgkygtnseasnaseteseakdelsdwslageeeegekese 117
                    + D+++++sss++ +g+ +++  GrG RG+ga+s++++t  +a  +s +    +d+ +    ++ e++++ ++ 
     KKY21457.1 105 VKDQQQNQSSSNRGRGGAHRGDSGRGDRGRGASSRSQSTFIDADWKSPNHGIINDTTQVAPAGEPESNVKISRA 178
                    68999999************************999888888888888877777775544444444444333332 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.089
  FXMRP1_C_core  57 lggsrs.ysgRGrGr.RGagatsg......kygtnseasnaseteseakdelsdwsla 106
                    +++ r+ y+ R  ++ RG++ ts+      + + ++e+ ++s+t+ +  d+l   +++
     KKY21457.1 707 SRTARMgYGLRSSAQtRGRKTTSTpvgdekGFEKEKEKITKSDTDAQITDKLATTTSS 764
                    2222221333333333444444443335344455555566677777777766554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (822 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       821  (0.0457917); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.49
# Mc/sec: 5006.76
//
Query:       KKY21458.1  [L=683]
Description: putative transketolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-151  504.5   0.0   1.4e-151  504.1   0.0    1.1  1  Transketolase_N  Transketolase, thiamine diphosphate binding 
    1.2e-44  152.1   0.0      2e-44  151.4   0.0    1.3  1  Transket_pyr     Transketolase, pyrimidine binding domain
    5.9e-10   39.1   0.0    1.2e-09   38.1   0.0    1.6  1  Transketolase_C  Transketolase, C-terminal domain
    0.00072   18.8   0.0     0.0024   17.2   0.0    1.5  2  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
     0.0011   17.9   0.1     0.0018   17.3   0.1    1.2  1  E1_dh            Dehydrogenase E1 component


Domain annotation for each model (and alignments):
>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  504.1   0.0    4e-155  1.4e-151       1     334 []       6     339 ..       6     339 .. 0.99

  Alignments for each domain:
  == domain 1  score: 504.1 bits;  conditional E-value: 4e-155
                      HHHHHHHHHHHHHHHHHHHHT-S--HHHHHHHHHHHHHHHHT--B-TTBTT-TTS-EEEESSGGGHHHHHHHHHHTTSS--HHHHTTTTSTT-S CS
  Transketolase_N   1 idkkavnaiRvLavDavekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLsnGhaslllYsllhLtGydlsledlksfrqlgsk 94 
                      id+ a+n+iR+LavD   ka+sGhPGap+g+a++++vlf+k++  nP++p+wi+RDRfvLsnGh+++l+YsllhL Gy +sl+dlk+frq++s 
       KKY21458.1   6 IDQLAINTIRLLAVDGTLKANSGHPGAPMGMAPVSHVLFNKFMSFNPKNPDWINRDRFVLSNGHGCMLQYSLLHLFGYAVSLDDLKNFRQVDSI 99 
                      57899***************************************************************************************** PP

                      S-SS--TTTSTT--S---STTHHHHHHHHHHHHHHHHHHHH-BTTB-S----EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETT CS
  Transketolase_N  95 tpGhPelghtagvevttGPLGqGianavglalaektlaatynkpgfdivdhytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisid 188
                      tpGhPe ++t+g+evttGPLGqG +navgla+a+++ aat+nkpgf++++++t+ + gDgc +eGv+sea+s+ag+lkLg+Li++yDdnkisid
       KKY21458.1 100 TPGHPEAHDTPGIEVTTGPLGQGFTNAVGLAIAQAHTAATFNKPGFELINNHTFTFFGDGCAQEGVASEAASIAGHLKLGNLIAIYDDNKISID 193
                      ********************************************************************************************** PP

                      EEGGGT--S-HHHHHHHTT-EEEEE.TTTT-HHHHHHHHHHHHH-TTS-EEEEEE--TTTTSTTTTTSGGGTSS---HHHHHHHHHHTTS-TT- CS
  Transketolase_N 189 GeteisftedvakrfeaygWhviev.edgedveaikaaieeakaekdkPsliklrtviGygspakagtedvhGapLgedevaalkkklGfdpek 281
                      G+t+isftedv krfe+ygWh++ev ++++d+e i+aai++aka++dkPs+ikl+t+iG+gs + +gt  vhG pL++d+ a +k+k+Gf+pe+
       KKY21458.1 194 GDTKISFTEDVLKRFESYGWHTLEVnDGDHDLEGIEAAIAKAKAVTDKPSVIKLTTTIGFGS-KLQGTGGVHGNPLKADDAAGVKQKFGFNPEE 286
                      *************************77789********************************.9****************************** PP

                      TS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT--- CS
  Transketolase_N 282 sfevpeevydaykekvaegakaeeeWeekfaaykkkapeeaaelerrlsgelP 334
                      sf+vp+evyd y++k+aega++e+eW+e+f++y++++ e+a e++rrl+++lP
       KKY21458.1 287 SFVVPKEVYDLYHKKAAEGAAKEQEWNELFKKYSAEHKELASEFTRRLEKKLP 339
                      **************************************************998 PP

>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.4   0.0   5.5e-48     2e-44       8     176 ..     361     531 ..     354     532 .. 0.97

  Alignments for each domain:
  == domain 1  score: 151.4 bits;  conditional E-value: 5.5e-48
                   HHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGT........TEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGGHHGGHHHH CS
  Transket_pyr   8 aeaealaellkedpevvligaDvaggtfsvrkgllhdqg........egrvidsgisEqavlgfavGaalagpllviveaqFgdFangAqiyadqai 96 
                    ++++l+++ k  pe++ ++aD++ ++++ +k+ +++q+        +gr+i++g++E++++g+++G+++ g+ l++++++F++F++    ya   +
    KKY21458.1 361 YSQNVLEAVHKVIPELLSGSADLTPSNNTRWKDAVDFQPpslglgdwSGRYIRFGVREHGMAGVMNGISAYGG-LIPAGGTFLNFVS----YAAGSV 452
                   68999*******************************************************************6.*************....****** PP

                   HCHHHHHT--EE.EEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC CS
  Transket_pyr  97 rsgeakgklkvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksllr 176
                   r ++a ++++v+ v t+++ig+gedGp+hq++e++a++r++p+++v+rP+d +et ++++ a++++  +P++l+l++++l+
    KKY21458.1 453 R-LSAISHQRVIyVATHDSIGLGEDGPTHQPIETLAHFRALPNMQVWRPADGNETSAAWYMALTSK-ATPSILALSRQALP 531
                   *.**************************************************************65.79*********997 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   3.4e-13   1.2e-09       2     124 .]     546     655 ..     545     655 .. 0.83

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 3.4e-13
                      EEEEEETTSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCSSE CS
  Transketolase_C   2 kaeilregkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdgldap 95 
                      ++ ++ +  d++l++ Gs+v+ +++ +++L+++gi+a+Vv++++++ +D +  +       rl v+ ++ +  ++  ev++++        +++
       KKY21458.1 546 YTLVDAPDADIILISSGSEVSLCVDTVAALKEQGIKAKVVSIPCFEIFDAQPKE------YRLSVLPDGIPVLSV--EVLSTMGW------EKY 625
                      567888999****************************************99988......999999999998888..55555444......555 PP

                      EEEEEE-SS.SSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C  96 vkrvggpdv.iepgsaeelekafgldaeki 124
                       +   g +  + +g++++++k f ++++ i
       KKY21458.1 626 SHEQFGLNRfGASGPYKDVYKKFEFTTAGI 655
                      555555555588899999999999888766 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   6.6e-07    0.0024      83     176 ..      88     193 ..       4     212 .. 0.76
   2 ?   -1.8   0.0       0.4   1.4e+03     233     272 ..     207     248 ..     195     249 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 6.6e-07
  DXP_synthase_N  83 dkfktlrqkgGls.gfpkrsEseyDafeagHsstsisaalGlavardlkge..........kkkvvaviGDgaltgGmafealnnigelk.kkll 165
                     d++k+ rq + ++ g+p+ ++ +   +++g  +   + a+Gla+a+ ++            ++++ +  GDg    G+a ea   +g+lk  +l+
      KKY21458.1  88 DDLKNFRQVDSITpGHPEAHDTPGIEVTTGPLGQGFTNAVGLAIAQAHTAAtfnkpgfeliNNHTFTFFGDGCAQEGVASEAASIAGHLKlGNLI 182
                     56677777777765788888888888889999999999*****9988877656777777777**************************98469** PP

  DXP_synthase_N 166 vilNdNemsis 176
                      i+ dN+ si+
      KKY21458.1 183 AIYDDNKISID 193
                     *********97 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.4
  DXP_synthase_N 233 lfeelgfkYlGpidG.hdleelikvleevkkl.kgpvllhvv 272
                      fe+ g + l   dG hdle ++ ++ ++k++ ++p +++++
      KKY21458.1 207 RFESYGWHTLEVNDGdHDLEGIEAAIAKAKAVtDKPSVIKLT 248
                     58899999999999989*************974679888766 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   4.9e-07    0.0018     102     222 ..     118     247 ..      99     250 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.9e-07
                 STTTHHHHHHHHHHHHH..........HHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--E.EEEEEEESEETTEEHHHH-S---GGG..TTTTS-E CS
       E1_dh 102 ivgaqvplvaGialaak..........iegkkevailliGDgAanqGdvyealnlaalwklpv.ifvveNNkygisTeaekasaskeladrargvgipg 189
                 ++g     + G+a+a+           +e  ++ +++++GDg a +G + ea+ +a   kl   i +   Nk+ i  +++ +  ++++ +r   +g   
  KKY21458.1 118 PLGQGFTNAVGLAIAQAhtaatfnkpgFELINNHTFTFFGDGCAQEGVASEAASIAGHLKLGNlIAIYDDNKISIDGDTKIS-FTEDVLKRFESYGWHT 215
                 4444444444677776677777777888888999***********************99997769999*******9987665.5788889999999999 PP

                 EEEE.TT.SHHHHHHHHHHHHHHHHTTT--EEEEE CS
       E1_dh 190 lrVd.gn.DplavyeAvkfAaeraregkgplliel 222
                 l+V+ g+ D + + +A   A+  a++ ++p++i l
  KKY21458.1 216 LEVNdGDhDLEGIEAAI--AKAKAVT-DKPSVIKL 247
                 99983332566666665..4444555.56777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 4247.00
//
Query:       KKY21459.1  [L=394]
Description: putative multicopper like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-36  124.8   0.1    6.6e-34  117.3   0.1    2.3  2  Cu-oxidase    Multicopper oxidase
    9.7e-34  116.0   3.2    2.6e-30  104.9   1.4    2.6  3  Cu-oxidase_2  Multicopper oxidase


Domain annotation for each model (and alignments):
>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.3   0.1   7.3e-38   6.6e-34       4     159 .]      17     172 ..      14     172 .. 0.88
   2 !    5.6   0.0    0.0017        16      64     101 ..     263     304 ..     212     341 .. 0.81

  Alignments for each domain:
  == domain 1  score: 117.3 bits;  conditional E-value: 7.3e-38
                 EEEEEEETCBCTTSCBC.HSSCHCHHHHHTT--SEEEETTBSS.......C....TTTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEEEET CS
  Cu-oxidase   4 vitlsDwyhkdakelekellasgkapadtppvpdavlingkggfnatladk....dgaslatltvepgktyrlriinvsaddslnfsIeGHkltVvevD 98 
                 +++l+Dwyh d  +l++e ++++++   +++++d+ +ingk ++ ++        ++a   +++++ gkt+rlr+in++ d + +fsI+GH++tV++ D
  KKY21459.1  17 PVLLNDWYHGDYRSLVEEIMSPADS--PVILTSDSNMINGKTNYPCSSDLGdectENAGISKFRFQTGKTHRLRLINGGGDGYQQFSIDGHEMTVIAND 113
                 689**************88887655..66899********9999988555356669999**************************************** PP

                 CETTSEEEESCEEE-TTEEEEEEEEE.-SS.SEEEEEEEEGSSSCHHHHTTSEEEEEEEESTT CS
  Cu-oxidase  99 gvyvepvevdsldIavGqrysvlvta.nqa.pgnYwivasgrsnlieafengtaaailrysea 159
                 +v v+p++++ + ++vGqr++vlv+a +++ +  Y+ ++     ++ +  n++a+ai+ y++a
  KKY21459.1 114 FVTVNPYTTNVVTLGVGQRTDVLVKAtMNPtSAVYMRSN----ITCVQASNPAAVAIIYYDKA 172
                 **************************7665255555555....7788999*********9975 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0017
                 EEEETTEEEEEEEESSS-BEEEEETSB-EEEEEE.....TCET CS
  Cu-oxidase  64 vepgktyrlriinvsaddslnfsIeGHkltVvev.....Dgvy 101
                  ++ k yr+ i+n +  + +++  +GH++ + ++     Dg+ 
  KKY21459.1 263 TQRSKSYRF-IVNNNSSTPHPLHYHGHNMYILATgtgtwDGSS 304
                 455666666.559999999************998766666655 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   6.8e-05      0.61      23     112 ..      58     145 ..      37     167 .. 0.77
   2 ?   -1.6   0.0      0.23     2e+03     100     115 ..     213     228 ..     200     233 .. 0.85
   3 !  104.9   1.4   2.9e-34   2.6e-30       6     134 ..     241     358 ..     228     361 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 6.8e-05
                   E......ETC.CTTTSSEEEEEETTEEEEEEEEE-SSS.-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES..S- CS
  Cu-oxidase_2  23 t......nge.efsentnvitlpkgevveiviqnntkl.pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfkad.np 110
                   +       +e + + + + ++++ g++ ++ + n +    + f ++Gh++ v++++  +           +np   ++v++  g+++ + +ka+ np
    KKY21459.1  58 YpcssdlGDEcTENAGISKFRFQTGKTHRLRLINGGGDgYQQFSIDGHEMTVIANDFVT-----------VNPYTTNVVTLGVGQRTDVLVKATmNP 143
                   255556533324456778899999******9999887779*************999999...........********************9996688 PP

                   EE CS
  Cu-oxidase_2 111 Gv 112
                     
    KKY21459.1 144 TS 145
                   65 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.23
                   EEEEEEES.S-EEEEE CS
  Cu-oxidase_2 100 wvairfkadnpGvwll 115
                   +v i f ++ +G wl+
    KKY21459.1 213 TVSITFGQNATGSWLW 228
                   57788999999**997 PP

  == domain 3  score: 104.9 bits;  conditional E-value: 2.9e-34
                   CCCCCCCEEEEEEEEEEE.....ETC.CTTTSSEEEEEETTEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE- CS
  Cu-oxidase_2   6 lptllqltsgneeaseit.....nge.efsentnvitlpkgevveiviqnntklpHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvp 96 
                    p               t     +g+  f+++ nv+ ++  +  +++++nn+++pHP+H HGh++++l++g+g+++  +   +n +np+rrd+  +p
    KKY21459.1 241 AP---------------TlllakQGNtSFEPDWNVYSTQRSKSYRFIVNNNSSTPHPLHYHGHNMYILATGTGTWDGSSI--TNPSNPQRRDVQIIP 320
                   33...............133444444499*********************************************876655..55799********** PP

                   TTEEEEEEEES.S-EEEEEEESSHHHHHTT-EEEEEEE CS
  Cu-oxidase_2  97 pggwvairfkadnpGvwllHCHilwHldqGmalqfvvr 134
                   ++g+++ + +a npG w +HCHi wHl++G+a+q++++
    KKY21459.1 321 ANGYLVWQADAINPGLWAFHCHIVWHLSAGFAMQVLEN 358
                   ***********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2717.40
//
Query:       KKY21460.1  [L=750]
Description: putative glycosyl [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-19   70.2   2.5    2.8e-19   69.8   0.3    2.2  2  Glyco_trans_2_3  Glycosyl transferase family group 2
    3.1e-18   66.5   0.0    4.7e-18   65.9   0.0    1.3  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    7.7e-13   48.6   0.0    1.5e-12   47.7   0.0    1.5  1  Glycos_transf_2  Glycosyl transferase family 2
    1.5e-12   46.9   4.6    1.7e-09   36.8   0.6    3.1  3  Cellulose_synt   Cellulose synthase
    3.1e-11   43.1   0.0    4.9e-11   42.4   0.0    1.3  1  Glyco_transf_21  Glycosyl transferase family 21
    0.00079   18.2   0.7     0.0048   15.6   0.3    2.1  2  Chitin_synth_2   Chitin synthase


Domain annotation for each model (and alignments):
>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.64   1.9e+03     160     181 ..     141     162 ..      97     196 .. 0.68
   2 !   69.8   0.3   9.2e-23   2.8e-19       2     176 ..     324     511 ..     323     541 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.64
  Glyco_trans_2_3 160 gsllwsalplhlallllfslla 181
                       ++l +  p++ +l+l  ++l+
       KKY21460.1 141 KRYLYKLAPFLTVLTLALYWLY 162
                      3333344444443333333333 PP

  == domain 2  score: 69.8 bits;  conditional E-value: 9.2e-23
  Glyco_trans_2_3   2 illlDaDtvlppdclreiaaela.spevaivqgpvlvm..nvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalqevggwdg 92 
                      i+ lDaD ++ +d lr i+ +l  ++++a+++ p l++  + ++ l +  ++f    h  + +  +al +v+ ++Gsg+++ r+al+e+ g++ 
       KKY21460.1 324 IAALDADMLPERDWLRAIIPHLLiDDRMALACPPQLFYnvPAGDPLCQSLDFFV---H-VSEPIKDAL-GVAWCTGSGYVVKRHALEEINGFP- 411
                      7889*******************99*********99873445677766665544...3.467888888.78999*******************. PP

  Glyco_trans_2_3  93 dessvsEDfdmglrlqrkGyrvrfvpeslvkekspltlraalrQrkRwayGc.....el.....eklil......lvrllgylgsllwsa.lpl 169
                        +s++ED   +  l+ +Gy++ +v+e+l +  +p t+  +l+Qr+Rwa G      +l     + +i+      +++++ y+   l++  l+ 
       KKY21460.1 412 -LGSLAEDVATSTLLLGRGYKTAYVHEALQYGTVPETFSGHLKQRTRWAIGTvdtsfKLkfylfGDNIRrltvaqRLSSFCYAVMGLFNIvLVM 504
                      .9*************************************************8665441133444222222222222233333333332221222 PP

  Glyco_trans_2_3 170 hlallll 176
                      +++++++
       KKY21460.1 505 SIFAMPV 511
                      2233332 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   1.6e-21   4.7e-18       1     229 [.     225     460 ..     225     461 .. 0.85

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 1.6e-21
  Glyco_tranf_2_3   1 prdlavlVptfneedvlge.vlesllaqeypr..vevvvvvdesdaetle.vaeelaaalpdvrvrvvvnarnlgs..tgksralnealravk. 87 
                      p+ + v++++ +e+d+l+  +++++  ++yp   ++v+v +d++++   + v + +a ++p++   + ++++ +g+    k+ +ln +++ +  
       KKY21460.1 225 PS-VDVFITCCGEDDDLVMdTVRAACDIDYPLekFRVIVLDDGKSDNLKAsVNDLAASTCPNA--MYMRRPKFPGVphHFKAGNLNYGIEETHn 315
                      55.789*********66544**********6666*******9988777551555566789997..78889887765336799********9888 PP

  Glyco_tranf_2_3  88 .....sdlvllvDdDtvvePdtlkrllqff.ltpkvgavgtpvfllnrstlvsalgalefaerhlrflaarralgvltlnGsgslirrevlkel 175
                           ++l++ +D+D + e d l+++ + +  +++++ +  p++++n  +  +  + l f  +        +algv+  +Gsg ++ r+ l+e+
       KKY21460.1 316 lpggpGELIAALDADMLPERDWLRAIIPHLlIDDRMALACPPQLFYNVPAGDPLCQSLDFFVHVS--EPIKDALGVAWCTGSGYVVKRHALEEI 407
                      999999************************88888888888889998555544445666556655..7889*********************** PP

  Glyco_tranf_2_3 176 egldplflltdDyelglrlrragfrtayvpgaavrevfpsslkayikqrnRwvy 229
                       g+   ++l++D+ ++  l  +g++tayv +a+ + + p++++   kqr+Rw+ 
       KKY21460.1 408 NGFPL-GSLAEDVATSTLLLGRGYKTAYVHEALQYGTVPETFSGHLKQRTRWAI 460
                      99999.**********************************************86 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   4.9e-16   1.5e-12       1     165 [.     228     403 ..     228     407 .. 0.80

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 4.9e-16
                      EEEEEESS-.TTTHHHHHHHHHHH.GGCCEEEEEEEEES-SSCHHHHHGGGCH.C-TTEEEEEESS.....S-HHHHHHHHHHHH--SS..... CS
  Glycos_transf_2   1 svviptyNe.ektlletlesllaq.dpypdfeiivvDDgStDetveileelak.edprvrvirree.....nvGkagalnaglraatgd..... 81 
                      +v+i+++ e  +++  t+++++++ +p ++f++iv+DDg +D++++ + +la+   p+  ++rr++      + kag+ln g++++        
       KKY21460.1 228 DVFITCCGEdDDLVMDTVRAACDIdYPLEKFRVIVLDDGKSDNLKASVNDLAAsTCPNAMYMRRPKfpgvpHHFKAGNLNYGIEETHNLpggpg 321
                      69**************************************************************98555533479***********97777778 PP

                      .EEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHH CS
  Glycos_transf_2  82 .yilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrrea 165
                       +i+ lDaD  p++dwl+ ++ +l   ++ ++l+++p  f++     +  +      + +  +  ++  +++ ++gs  +++r a
       KKY21460.1 322 eLIAALDADMLPERDWLRAIIPHLLI-DDRMALACPPQLFYNVPAGDPLCQ--SLDFFVHVSEPIKDALGVAWCTGSGYVVKRHA 403
                      8**********************999.555888888777777655444433..34555555555555555555555555555555 PP

>> Cellulose_synt  Cellulose synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.1    0.0064        19      17      45 ..     240     268 ..     227     279 .. 0.77
   2 !    7.4   0.0   0.00044       1.3     156     210 ..     274     330 ..     270     405 .. 0.73
   3 !   36.8   0.6   5.6e-13   1.7e-09     408     555 ..     400     547 ..     373     576 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0064
  Cellulose_synt  17 vtantvlsilavdypvekvscyvsddGaa 45 
                     +  +tv +   +dyp+ek  + v ddG +
      KKY21460.1 240 LVMDTVRAACDIDYPLEKFRVIVLDDGKS 268
                     3458999999*****************76 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00044
  Cellulose_synt 156 gaedveGnelprlvyvsrekrpGydhnkkaGamnalvrvsavlsnap..filnldcd 210
                     + +d+  +  p  +y+ r k pG  h+ kaG +n  +  +  l  +p   i  ld d
      KKY21460.1 274 SVNDLAASTCPNAMYMRRPKFPGVPHHFKAGNLNYGIEETHNLPGGPgeLIAALDAD 330
                     5678889999***********************988877777766553245556655 PP

  == domain 3  score: 36.8 bits;  conditional E-value: 5.6e-13
  Cellulose_synt 408 ktewGkei.GwiyGsvtedvltGfkmharGwrsvycvtkrdafkGsapinlsdrlhqvlrwalGsveiffsrnnalfagykkklkllerlaylnv 501
                     k +  +ei G+  Gs++edv t   +  rG+++ y         G+ p  +s  l+q  rwa+G+v+  f  +  lf    ++l + +rl+ +  
      KKY21460.1 400 KRHALEEInGFPLGSLAEDVATSTLLLGRGYKTAYVHEAL--QYGTVPETFSGHLKQRTRWAIGTVDTSFKLKFYLFGDNIRRLTVAQRLSSFCY 492
                     5544455547889**********************86544..46***********************************99************** PP

  Cellulose_synt 502 iiypftsifllvycilpalsllsgkfivkelsnlasiyll.llflslivlavlel 555
                     ++  +  i+l++  +  ++ l+ ++ +v   +   + +l+ + f s++v  + el
      KKY21460.1 493 AVMGLFNIVLVMSIFAMPVVLIINQRLVAYANDNQLRWLIrACFASIAVNRLCEL 547
                     ****999*99999988888888888888888887888877246677777777666 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   1.7e-14   4.9e-11      32     172 ..     322     459 ..     289     460 .. 0.82

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 1.7e-14
  Glyco_transf_21  32 dllvisDsdvrvkpdyLeellaale.dpkvglVtslpvgsdakglaaal.eaaflntlagvlqaklsglgfavGksmalrreaLeaiGGfeala 123
                      +l+  +D+d++ ++d L+ +  +l  d++++l + + + ++            f+  ++  ++  + g+  ++G+ ++++r+aLe+i Gf    
       KKY21460.1 322 ELIAALDADMLPERDWLRAIIPHLLiDDRMALACPPQLFYNVPAGDPLCqSLDFFVHVSEPIKD-ALGVAWCTGSGYVVKRHALEEINGFPL-- 412
                      78999***************99987357888888877755444333333144566788888888.99***********************99.. PP

  Glyco_transf_21 124 deLAeDyalgkllraaGlkvvlspapiaqtsvprrsslrallaRqlrWa 172
                        LAeD a+++ll  +G+k++ +++++    vp+  +++  l++ +rWa
       KKY21460.1 413 GSLAEDVATSTLLLGRGYKTAYVHEALQYGTVPE--TFSGHLKQRTRWA 459
                      9************************999888885..99**********8 PP

>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.071   2.1e+02      27      66 ..     227     266 ..     205     280 .. 0.84
   2 !   15.6   0.3   1.6e-06    0.0048     324     382 ..     414     470 ..     400     587 .. 0.59

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.071
  Chitin_synth_2  27 ticlvtaysegeeglrttldslastdyddkrklllvvcdG 66 
                     + +++t+  e+++ +  t+ +++ +dy+ ++  ++v+ dG
      KKY21460.1 227 VDVFITCCGEDDDLVMDTVRAACDIDYPLEKFRVIVLDDG 266
                     55799***********************999888898888 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.6e-06
  Chitin_synth_2 324 llGedrylttlllktfpkrktvfvpqakcktvaPdtfkvllsqrrrwinstvhnllelv 382
                      l ed   +tlll     +kt +v +a    ++P+tf+  l qr rw   tv   ++l 
      KKY21460.1 414 SLAEDVATSTLLLGR--GYKTAYVHEALQYGTVPETFSGHLKQRTRWAIGTVDTSFKLK 470
                     578999999999964..699*******************************98877663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (750 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 4920.76
//
Query:       KKY21461.1  [L=230]
Description: putative xyloglucan-specific endoglucanase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-16   60.3   4.1    3.6e-15   56.6   3.4    2.2  1  Glyco_hydro_12  Glycosyl hydrolase family 12


Domain annotation for each model (and alignments):
>> Glyco_hydro_12  Glycosyl hydrolase family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   3.4     2e-19   3.6e-15      81     213 ..      87     227 ..      25     228 .. 0.79

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 2e-19
                     EEE-TT--EEEEEEEEEESSTT-S..--TT-EEEEEEEE.EE.S---SSEEEE...EEEETTEEEEEEE...EESSSEEEEEEESS--EEEEEEH CS
  Glyco_hydro_12  81 siddtnvkanvaydlflaaeknqv..tsigdvElmiWlaryg.niqPiGekie...tavvgGetWelwlG..aeaeqdvlsFvakspikgysfDv 167
                     +++d  ++ nv +d+fl+++++++  t    +E+miWl ++g + qPiG+ ++   t vv+  t++l+ G   +++q+v+++ a+ +++ +++++
      KKY21461.1  87 GLSDLELNSNVCFDMFLDSDPDKAitTDNSTYEVMIWLGQFGlSTQPIGNTLGvkaTKVVNETTFDLYDGenSNTGQKVFTWLAEGNTTDFVGNI 181
                     234556889*********9998876577889***********779******999999*************888899******************* PP

                     HHHHHHHH-SS---GGGSEE-EEEEE--B...--TT-EEEEEEEEEE CS
  Glyco_hydro_12 168 kdFldaltsargldaedlylislqiGtEp.ftgspetlkvenfsasv 213
                        ld l+s  g ++ + yl  + +G E  +    +t++v + s ++
      KKY21461.1 182 GLLLDELSS-YGGPTTSDYLGYIAFGSEAlYVTKNVTFSVSELSLDL 227
                     ******765.56678888**********7367778889999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1574.76
//
Query:       KKY21462.1  [L=667]
Description: putative dual specificity phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-09   36.6   0.0    6.3e-09   35.7   0.0    1.3  1  DSPc            Dual specificity phosphatase, catalytic domai
    3.1e-06   27.0   0.0      5e-06   26.2   0.0    1.2  1  Y_phosphatase   Protein-tyrosine phosphatase
  ------ inclusion threshold ------
      0.086   12.8   0.0       0.17   11.8   0.0    1.4  1  Y_phosphatase3  Tyrosine phosphatase family


Domain annotation for each model (and alignments):
>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.1e-12   6.3e-09      67     117 ..     123     174 ..     103     186 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1.1e-12
                 HHHHHTT-EE.EEEESSSSSHHHHHHHHHHHHHHTSCHHHHHHHHHHHSTT- CS
        DSPc  67 dkakqkgkkv.lVHCqaGisRSatliiaYlmktknlslneayeflkerrpai 117
                 dk k+k+k+v +VHC+aG  RS+t+++ Yl++++++  ++a++ + err ++
  KKY21462.1 123 DKKKNKRKRVaVVHCKAGKGRSGTVACSYLISQEGWAREDALQRFTERRMRV 174
                 5678888888358*********************************999765 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   8.4e-10     5e-06     109     193 ..      58     153 ..      39     165 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 8.4e-10
                    EEEEESSEEEEEEEEEETTTTEEEEEEEEEEESSS-SSSSGSC...CHHHHHHHHHHHHHH..........STTSS-EEEECSSSSHHHHHHHHHH CS
  Y_phosphatase 109 ekedekeyvlrelevkkkkeeseerevkqlqytnWpdhgvpes...aksllklirkveksk..........eaksgpvvVhCsaGvgRtgtfvald 191
                     k + k++++ e++ + ++  + ++    + + +Wpdh  p+     +++ ++ + ++ +           ++++   vVhC+aG gR+gt+++  
     KKY21462.1  58 YK-HGKDWMVFEFRAEGTGYPD-SEVYGRIRHYAWPDHHSPPMrllINAVCSMRQYLRYEDeneeqpdkkkNKRKRVAVVHCKAGKGRSGTVACSY 151
                    44.6789999999999999986.5555899999******99643334555555555555559999***9988888889*************98765 PP

                    HH CS
  Y_phosphatase 192 il 193
                    ++
     KKY21462.1 152 LI 153
                    54 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.8e-05      0.17     122     140 ..     132     150 ..     114     169 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.8e-05
  Y_phosphatase3 122 pvlfHCtaGKDRTGvlaal 140
                      +++HC aGK R G +a  
      KKY21462.1 132 VAVVHCKAGKGRSGTVACS 150
                     689***********98764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       861  (0.0480228); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.50
# Mc/sec: 4010.82
//
Query:       KKY21463.1  [L=273]
Description: hypothetical protein UCRPC4_g03726 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.016   15.6   0.6      0.032   14.5   0.6    1.5  1  DUF3416   Domain of unknown function (DUF3416)


Domain annotation for each model (and alignments):
>> DUF3416  Domain of unknown function (DUF3416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.6   1.8e-06     0.032      82     118 ..     189     225 ..     144     243 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.8e-06
     DUF3416  82 ftveAWvDpfatWrhdlekkveagqdveleleeGarl 118
                  +v  W D ++ W +d+e kv  g+d ++  eeG++l
  KKY21463.1 189 LRVYDWWDLIGGWAKDVEEKVGKGEDPRVSAEEGKEL 225
                 57889*****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       220  (0.0122706); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1923.40
//
Query:       KKY21464.1  [L=527]
Description: putative adenylyl cyclase-associated protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.3e-110  369.8   5.9   1.3e-110  369.8   5.9    2.7  2  CAP_N          Adenylate cyclase associated (CAP) N terminal
      8e-58  194.5   2.5    1.1e-57  194.0   2.5    1.2  1  CAP_C          Adenylate cyclase associated (CAP) C terminal
  ------ inclusion threshold ------
      0.053   13.2   2.0          1    9.1   1.2    2.2  2  TBCC           Tubulin binding cofactor C
       0.79   10.0   0.1       0.79   10.0   0.1    2.8  4  Flagellin_IN   Flagellin hook IN motif


Domain annotation for each model (and alignments):
>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  369.8   5.9  2.9e-114  1.3e-110       2     316 ..      15     336 ..      14     337 .. 0.87
   2 ?   -1.0   1.4      0.22     1e+03     240     264 ..     343     367 ..     335     411 .. 0.46

  Alignments for each domain:
  == domain 1  score: 369.8 bits;  conditional E-value: 2.9e-114
                 XXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXSXH.....HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH CS
       CAP_N   2 tlikRLEaatsrLEdiaisessssasskasssssaaaaaaaaaakaaaaaaaa....ksveaFdelisgsvkefvelskkiggevaeqaelvkkafeaq 96 
                 tlikRLEaatsrLEd+a+s +ss+ ++ ++ +++aa+ ++++ ++a+++a+++    +s+e+Fd+li+++v +fv++++ki++++ eqa+++++af+a+
  KKY21464.1  15 TLIKRLEAATSRLEDMATSIDSSHPATIDAINQAAATPSQTSLTSAPKPAPTPeplpRSIEEFDRLIEEEVGSFVTAAEKIDPLLFEQAKSFREAFKAE 113
                 8***************99944444444333333333333333222222222224677****************************************** PP

                 HHHHHHHHHBE---.HHHHHHHCHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHCGGGGGGGGG--S-HHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHH CS
       CAP_N  97 rkfllvaskakkPadseelqelLkplseaiqkvqeireknrksklfnhLsavsegipalgWvavepkPapyvkemkdaaqFYtNrVlkeykekdkkhve 195
                 r++llva+k+k+P+   e qelL++l++a  +v+e re+nr+s++f hLsavseg++algW+ ve++Pa++v+e+ ++aqFY+NrVlkeykekd+khve
  KKY21464.1 114 RTYLLVATKSKQPS---EQQELLTDLHHATGAVDEKREANRASPYFPHLSAVSEGVVALGWI-VEKRPADLVAETFGGAQFYGNRVLKEYKEKDQKHVE 208
                 *************5...99*******************************************.999********************************* PP

                 HHHHHHHHHHHHHHHHHHHSTTS----.TTSBE.......SSC--XXXXXXX....XXXXXXXX...........XXXXXXXXXXXXXXXXXXXXXXXX CS
       CAP_N 196 WvksflqilkeLqaYvkeyhttGltWn.kkGkdaeealkaaaaaasaaaaggpppPpPpPppasvf......eeesaaasasaaaggmsavFaeLnkGe 287
                 ++++f++++++L aY+ke+h  Gl+Wn k+G+da ealk+ +  +s+ +agg+ppPpPpPpp ++f            ++a+a++g+m+avF+++n+G+
  KKY21464.1 209 YIQAFYKVFRSLIAYIKEHHALGLVWNnKDGIDAMEALKQVKGGKSTGSAGGAPPPPPPPPPLPTFdnaggpPPPPPPPAAAAKGGDMGAVFDQINQGS 307
                 **************************8799*********99999999999997777777767666666776644455788999**************** PP

                 XXXXXXXXXXXXXXXXXX..XXXXXXXXX CS
       CAP_N 288 aiTkgLkkVdksqkThKnPslrasstvpe 316
                  iT++L+kVdks++ThKnPslra+s+vpe
  KKY21464.1 308 GITASLRKVDKSEMTHKNPSLRAGSAVPE 336
                 ***************************96 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.22
                 XXXXXXX....XXXXXXXX.....X CS
       CAP_N 240 saaaaggpppPpPpPppasvfeees 264
                 s+++ g++p P  +P p s+ +++ 
  KKY21464.1 343 SSTSRGKSPMPSKKPKPESMRTKKP 367
                 2222233222222232333322222 PP

>> CAP_C  Adenylate cyclase associated (CAP) C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.0   2.5   2.5e-61   1.1e-57       1     157 []     366     525 ..     366     525 .. 0.96

  Alignments for each domain:
  == domain 1  score: 194.0 bits;  conditional E-value: 2.5e-61
       CAP_C   1 kppklelegnkwlvenqennk..eieieetelkqsvyifkCknstiqikgKvnaitldnckkvsvvvdsvvSsvevincksvkvqvlgkvptisiDktd 97 
                 kppk+eleg+kwl+en+en+    ie+ ++e+++ ++i++C++++++++gK+nai++dnc+ +s+v+ds+vSs++vi++++++vqv g +pt+ +D++d
  KKY21464.1 366 KPPKKELEGSKWLIENFENTGtdIIEV-NAEISHGILISRCTKAVVKVNGKANAISIDNCTGLSIVIDSLVSSLDVIKSPKFQVQVDGVLPTVLLDQVD 463
                 8****************9777746666.5********************************************************************** PP

       CAP_C  98 gvqiyLskesldteivtsksseinvsvpk..eedgdykElpipeqfktkikkgklvtevveh 157
                 g+qiyLs +sl te++tsk+s++n+ +p   ++dgd kE+p+peq++t++k+gk+v+e+veh
  KKY21464.1 464 GAQIYLSPKSLGTEVFTSKCSSVNIVLPPsdDNDGDDKECPVPEQIRTVVKDGKVVSEIVEH 525
                 ***************************99888889*************************98 PP

>> TBCC  Tubulin binding cofactor C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.2   0.00023         1       4      42 ..     400     438 ..     397     450 .. 0.85
   2 ?    3.3   0.0     0.014        63      13      54 ..     447     490 ..     435     493 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00023
                 EEE-S-BS-EEEE-S--S-EEEES-BS-EEE----SS-E CS
        TBCC   4 vkisnlsdctiylldplssvtiddcknctivlgpvsgsv 42 
                 + is+++++++ ++++ +++ id+c+   iv+    +s+
  KKY21464.1 400 ILISRCTKAVVKVNGKANAISIDNCTGLSIVIDSLVSSL 438
                 679************************999997766666 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.014
                 EEEE-S--S-EEEES-BS-EEE---..-SS-EEEES-BS-EEE- CS
        TBCC  13 tiylldplssvtiddcknctivlgp..vsgsvfiedcenctivv 54 
                 ++++ + l +v +d+++  +i+l+p    + vf ++c+ ++iv+
  KKY21464.1 447 QVQVDGVLPTVLLDQVDGAQIYLSPksLGTEVFTSKCSSVNIVL 490
                 688899999**************77336799*********9996 PP

>> Flagellin_IN  Flagellin hook IN motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       2.3     1e+04      19      31 ..      23      35 ..      22      37 .. 0.80
   2 ?   -1.5   0.1      0.67     3e+03      27      35 ..      42      50 ..      40      59 .. 0.74
   3 ?   10.0   0.1   0.00018      0.79      17      46 ..     290     316 ..     287     325 .. 0.83
   4 ?   -2.1   0.2         1   4.6e+03       5      29 ..     411     433 ..     409     434 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.3
                  TTTBCHHHHHHHH CS
  Flagellin_IN 19 agdtlddiadaIN 31
                  a++ l+d a++I 
    KKY21464.1 23 ATSRLEDMATSID 35
                  7788999999997 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.67
                  HHHHHHHCC CS
  Flagellin_IN 27 adaINavss 35
                  +daIN +++
    KKY21464.1 42 IDAINQAAA 50
                  689995544 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00018
                   ECTTTBCHHHHHHHHHHCCTTTEEEEEEEE CS
  Flagellin_IN  17 vkagdtlddiadaINavssktGVsAsidad 46 
                   +++g +++++ d+IN   ++ G++As+ + 
    KKY21464.1 290 AAKGGDMGAVFDQIN---QGSGITASLRKV 316
                   68999**********...********9655 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 1
                   EETTECS-EEEEECTTTBCHHHHHH CS
  Flagellin_IN   5 nggggketvtisvkagdtlddiada 29 
                   +++g+ +   is++  ++l+ ++d+
    KKY21464.1 411 KVNGKANA--ISIDNCTGLSIVIDS 433
                   66777777..999888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       886  (0.0494171); expected 358.6 (0.02)
Passed bias filter:                      628  (0.0350271); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 3424.24
//
Query:       KKY21465.1  [L=85]
Description: hypothetical protein UCRPC4_g03728 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.53
# Mc/sec: 480.90
//
Query:       KKY21466.1  [L=254]
Description: putative mitochondrial 54s ribosomal protein 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-07   31.6   0.0    3.3e-07   30.9   0.0    1.3  1  dsrm             Double-stranded RNA binding motif
     0.0012   19.0   0.0     0.0021   18.2   0.0    1.3  1  Ribonucleas_3_3  Ribonuclease-III-like


Domain annotation for each model (and alignments):
>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   3.7e-11   3.3e-07       3      65 ..     155     218 ..     153     219 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 3.7e-11
                 HHHHHHHHHTT.SEEEEEEEEEESSTSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHH CS
        dsrm   3 skLqeycqkkg.kppnyeyvseegpphslpkFvvtvkvngklygsGvgsnKKeAeqsAAedale 65 
                 + L ++c ++g   p+ + +se+g  + +p+F+v v+ + ++ g+G gs+ +eA  +AA  al+
  KKY21466.1 155 RDLSRLCAREGfEAPVARLISETGRKSRHPVFIVGVYSGREKLGEGAGSSLDEARVRAAISALK 218
                 678899*****999************************************************96 PP

>> Ribonucleas_3_3  Ribonuclease-III-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.3e-07    0.0021      87     126 ..     100     139 ..      88     141 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.3e-07
  Ribonucleas_3_3  87 tegsgrekvladaleAliGAiyldkgaevaqefveekilk 126
                      t+g   ek   + + A+iGA +l +g +va++f++ ++++
       KKY21466.1 100 TGGVTAEKASTNFVRAVIGALHLHGGRSVARQFFKDHFMS 139
                      6667778889999**********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1827.29
//
Query:       KKY21467.1  [L=333]
Description: putative pbsp domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-67  226.7   0.0    7.2e-67  225.2   0.0    1.7  1  BSP        Peptidase of plants and bacteria
  ------ inclusion threshold ------
       0.15   11.9   0.1       0.31   10.9   0.1    1.5  1  SprT-like  SprT-like family


Domain annotation for each model (and alignments):
>> BSP  Peptidase of plants and bacteria
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.2   0.0   8.1e-71   7.2e-67       1     205 [.      44     264 ..      44     280 .. 0.91

  Alignments for each domain:
  == domain 1  score: 225.2 bits;  conditional E-value: 8.1e-71
         BSP   1 kpkvrleindldtpggkrFlrlvpdaesvlsdasrkvlklLyks.pser.........ippvrsVtlllrdidgvaytsG..ldddhkeIhlslsyiek 87 
                 kp +rl+ ndl++p++  Fl+lv d +++l +a++++ k+Ly s ps +         +pp+rsVt++lr+++gvayt+G  +d  hkeIh+sl+yi++
  KKY21467.1  44 KPVFRLHFNDLSHPASFHFLNLV-DGSRILPNALEAIRKHLYPSePSGKphdqsqkfhLPPTRSVTVILRSMGGVAYTTGldIDSSHKEIHVSLDYIQN 141
                 5789*******************.9******************9888778999***************************888999************* PP

         BSP  88 asae.kdakaevtgvLthelvhvyqweaegrapggliEGiAdyvRlkaglepahwkrpasg...adkwdqgyqvtayFLeyledrvsegfvrklNdkll 182
                  +++ ++ ++e+ gv+the+vh+yq+++e++apggliEGiAd+vRlkagl p+hw  +++     dkwd gyq ta+FLe+le+ ++ g+v+++Nd+l+
  KKY21467.1 142 CTNDpHRRRDEIIGVITHEMVHCYQYDGEQTAPGGLIEGIADFVRLKAGLGPPHWFDENGRkprGDKWDHGYQKTAFFLEWLEEVYGVGTVGRINDALR 240
                 **9956666**********************************************9988878888*******************99************* PP

         BSP 183 rvky.ssdaffkellGkdveeLwe 205
                   ky +s +f+++l+G++ +++we
  KKY21467.1 241 TAKYnESRGFWEGLFGQGKKDFWE 264
                 ****96677777777777777775 PP

>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   3.5e-05      0.31      45      78 ..     128     167 ..      94     173 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.5e-05
   SprT-like  45 hhasIeLsekllds......rsedrllntLaHElcHlalf 78 
                  h++I  s  ++++      r++d+++ ++ HE++H + +
  KKY21467.1 128 SHKEIHVSLDYIQNctndphRRRDEIIGVITHEMVHCYQY 167
                 55666666666665555556889*************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2206.77
//
Query:       KKY21468.1  [L=1265]
Description: putative heat repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-101  339.1   5.2    4.7e-66  222.6   0.2    2.2  2  CLASP_N   CLASP N terminal
     0.0015   18.6   0.2        7.9    7.0   0.0    4.5  4  HEAT      HEAT repeat
     0.0043   17.1   0.3        3.2    7.8   0.0    3.6  3  Cnd1      non-SMC mitotic condensation complex subunit 1


Domain annotation for each model (and alignments):
>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.5   1.1   5.4e-38   3.2e-34       1     217 [.       1     212 [.       1     223 [. 0.90
   2 !  222.6   0.2   7.9e-70   4.7e-66       9     226 ..     379     593 ..     371     594 .. 0.97

  Alignments for each domain:
  == domain 1  score: 118.5 bits;  conditional E-value: 5.4e-38
     CLASP_N   1 ldekaeellaafegketelnwdaReknilklrslikgn.vpedaveelleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpm..veill 96 
                 +d ka ell+ f +  ++  +d++ +++  l+s+ik + vp+ a+ + +e+++      +++ ++L t ++st+  +lk+l  q ++++  +   + ++
  KKY21468.1   1 MDIKAFELLKLF-QCAQDSAVDTKLRYLNDLKSDIKHKsVPDTAIANTFEVIR--RSIASSQSQQLMTLGFSTLSNFLKRLNVQGQTNVIGFhgHKLYY 96 
                 666778899999.788999**********************************..666678999************************66665677889 PP

     CLASP_N  97 ptLlkllgdtKkiisqnanqalaallsnas..fspri.lqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptV 192
                  +L++ l+d+ + i+ +a+ a+a+++  ++     +i ++++++ l+ Kn++p+  s++wL+ ++++++         l +++++++l+ +leDa+ +V
  KKY21468.1  97 ALLIEKLSDHRETIRVSASKAFADFWVYVHpeARFEIeHNIIQNVLSAKNPKPKVLSLQWLSDMVKEHG---------LKFRSYVPLLIVCLEDADGAV 186
                 9****************************933445688999****************************.........99******************* PP

     CLASP_N 193 RetaRstfweffkvwPsrAksll.ss 217
                 R+ta++t++++fk+   rA s+l ++
  KKY21468.1 187 RDTAKATVIQLFKNTSGRALSDLsKQ 212
                 ***********************533 PP

  == domain 2  score: 222.6 bits;  conditional E-value: 7.9e-70
     CLASP_N   9 laafegketelnwdaReknilklrslikgnvpedaveelleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdtK 107
                  + f gke+e+nw++Re++i  lr+ +kgn p+d   ++   +  l+e+ilka++sLrttlss gc l++e++    + +d m++ ll  L+kl+++tK
  KKY21468.1 379 RSYFAGKESEQNWSKREESINILRRVTKGNGPTDERLAYCGNMYVLVECILKAINSLRTTLSSSGCDLIQEMCAAVSHGIDCMADLLLYDLVKLCAATK 477
                 689************************************************************************************************ PP

     CLASP_N 108 kiisqnanqalaallsnasfsprilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfweffkv 206
                  i++++an +++a++ +as+++ i++++++a+qdKnvqpR ++a+wLk+l++ +    +  ++s+ ldli+ks++kgleDan  VR+ +R t+w+f++ 
  KKY21468.1 478 TIARNKANDTVDAIVGSASMNKLIVNHVWQAAQDKNVQPRRFAAGWLKTLMQAHR---QGCNKSGCLDLIDKSIRKGLEDANLDVRKDMRVTYWTFAQL 573
                 *******************77777******************************9...99*************************************** PP

     CLASP_N 207 wPsrAksllssldpkvrkal 226
                 +P+rA+s++ssld+k ++al
  KKY21468.1 574 FPDRAQSIMSSLDTKSQNAL 593
                 *****************998 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0067        40       4      27 ..      98     121 ..      96     124 .. 0.89
   2 !    7.0   0.0    0.0013       7.9       2      29 ..     172     199 ..     172     201 .. 0.89
   3 ?    0.4   0.0      0.18   1.1e+03       1      29 [.     501     529 ..     501     531 .. 0.86
   4 ?   -2.3   0.0       1.3     8e+03       5      18 ..     548     561 ..     547     561 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0067
                 HHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgal 27 
                 ll++ lsD    +R +A ka++++
  KKY21468.1  98 LLIEKLSDHRETIRVSASKAFADF 121
                 578889***************987 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0013
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                 +Pll+ +l+D +  VR++A  ++ +l +
  KKY21468.1 172 VPLLIVCLEDADGAVRDTAKATVIQLFK 199
                 69*****************888888766 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.18
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 ++++++++ +D++ + R+ Aa  L +l++
  KKY21468.1 501 IVNHVWQAAQDKNVQPRRFAAGWLKTLMQ 529
                 688999999****9999999999988876 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.3
                 HHHHHT-SSHHHHH CS
        HEAT   5 llkllsDpspeVRe 18 
                 + k l+D + +VR+
  KKY21468.1 548 IRKGLEDANLDVRK 561
                 56899********6 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.018   1.1e+02      63     108 ..      99     145 ..      92     167 .. 0.86
   2 !    7.8   0.0   0.00053       3.2      22      52 ..     171     201 ..     168     218 .. 0.83
   3 ?    1.6   0.0     0.041   2.5e+02      21      39 ..     543     561 ..     492     606 .. 0.63

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.018
        Cnd1  63 laklleDenprVvanalaalteisek.senaiynllpdiisklsdal 108
                 l + l+D+ ++++ +a  a+ + +    ++a +++ ++ii+++++a 
  KKY21468.1  99 LIEKLSDHRETIRVSASKAFADFWVYvHPEARFEIEHNIIQNVLSAK 145
                 66789*********************999***********9998653 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00053
        Cnd1  22 lvepLrkrLkDedpyVRktaaivvakLilnd 52 
                 +v+ L  +L+D d  VR ta  +v++L++n+
  KKY21468.1 171 YVPLLIVCLEDADGAVRDTAKATVIQLFKNT 201
                 6777889********************9886 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.041
        Cnd1  21 ylvepLrkrLkDedpyVRk 39 
                  + + +rk+L+D +  VRk
  KKY21468.1 543 LIDKSIRKGLEDANLDVRK 561
                 2333445555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.09u 0.36s 00:00:01.45 Elapsed: 00:00:00.55
# Mc/sec: 6929.72
//
Query:       KKY21469.1  [L=1039]
Description: putative rho gtpase activator rga [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-44  150.9   0.0    6.5e-44  149.4   0.0    1.8  1  RhoGAP    RhoGAP domain
  ------ inclusion threshold ------
      0.011   15.6   7.3      0.019   14.8   7.3    1.3  1  DUF445    Protein of unknown function (DUF445)
      0.036   14.2   1.3        2.6    8.3   0.2    2.7  2  PAH       Paired amphipathic helix repeat
        3.1    7.6   6.6       0.55   10.1   2.7    1.7  2  DUF4897   Domain of unknown function (DUF4897)
        3.6    8.1   7.4         21    5.7   1.4    2.9  2  UPF0449   Uncharacterised protein family UPF0449
        4.6    7.6   8.3       0.11   12.8   0.8    2.2  2  DUF4164   Domain of unknown function (DUF4164)


Domain annotation for each model (and alignments):
>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.4   0.0   2.2e-47   6.5e-44       1     148 [.     861    1009 ..     861    1013 .. 0.98

  Alignments for each domain:
  == domain 1  score: 149.4 bits;  conditional E-value: 2.2e-47
                  BHHHHHHHHHHHHHTTTSTTTTTS-S-HHHHHHHHHHHHHTGGGCT.TTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHHHHTSSSHHHHHHHH CS
      RhoGAP    1 PiivekcvefiekrgldtegiyRvsgskarvkelreafdkgkavds.dleeedvhavaslLKrfLrelpepLltkelyeelieaaksedeeerleal 96  
                  P iv++c+e++e rg+d+egiyR+sg ++++  ++e f+k++++ + ++ + d+hav+s LK++Lr lp+pL+t+e y+++++a++  + e +++a+
  KKY21469.1  861 PYIVTRCIEEVEVRGMDVEGIYRKSGGNSQILIVKEGFEKNPQSFNiSDPDLDIHAVTSGLKQYLRRLPTPLITYEVYDKILDACNLSTSEAKVQAM 957 
                  89*****************************************998899999********************************************* PP

                  HHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHH---HHHHHHHHHHHHHT-TS CS
      RhoGAP   97 kellekLPkenrdtLryLlehLkrvaenskenkMtaknLaivfaPtLlrpks 148 
                  ++++ +LP++++d+L++L+ hLkrv  ++ken Mt+ n+a+vfaPt++rp+s
  KKY21469.1  958 QHAIIDLPQVHQDVLEFLVFHLKRVVGHEKENLMTPLNIAVVFAPTIMRPES 1009
                  *************************************************976 PP

>> DUF445  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   7.3   6.5e-06     0.019      99     267 ..     509     670 ..     475     714 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.5e-06
      DUF445  99 dlddesikellkknlkkkleevipepllgkllellleeerhkkllddlldriknllkdeevkekikelidelieeesgklvlesivsmflreltsilek 197
                 +l+ e+ k l k++  + le++ ++ ++ kl   + +e r k+ +  +ld  k+++ +e +   ++e i ++ ++++++  l+++++++lr+ ++ l k
  KKY21469.1 509 ELRRERQKTLEKERRVSELEAMVNSTTEIKL---ANSELREKRSTMVVLDAQKEIVVRELEV--LTEHIAQFKKTTEPD--LNKFANSVLRDFSEALVK 600
                 3333444444444444555555555555555...555666666677778***********99..***************..999999999999999999 PP

      DUF445 198 vksdpdhllreeedkkvreliadllndpela.akveklkkkklsdlevqeyeealwealkdlllkdlneee 267
                 +++  +  +++++++k +e +a++ + ++++ + ++++ +  l++ + +e  ++l+ +++ l +k ++eee
  KKY21469.1 601 LRDSYAPKIEHALTQK-QEVVAEISTLNQMKeNLLQEFEQLSLKNAQLAELNNTLVHQIQGLYKKGAKEEE 670
                 9999999999999999.7777777776666615689*****************************999977 PP

>> PAH  Paired amphipathic helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.2   0.00087       2.6      18      43 ..     614     639 ..     589     640 .. 0.67
   2 ?    4.0   0.1     0.018        55       1      29 [.     936     973 ..     936     978 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00087
         PAH  18 idskeVyeqVskLFhdhpdLlreFnq 43 
                   ++eV++++s L +  + Ll+eF+q
  KKY21469.1 614 TQKQEVVAEISTLNQMKENLLQEFEQ 639
                 34789*******************98 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.018
         PAH   1 evYkeFLdiLhdyqkeq.........idskeVyeqVsk 29 
                 evY++ Ld ++  ++e          id + V++ V +
  KKY21469.1 936 EVYDKILDACNLSTSEAkvqamqhaiIDLPQVHQDVLE 973
                 89************884345666666888888887755 PP

>> DUF4897  Domain of unknown function (DUF4897)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.7   0.00018      0.55       6     114 ..     540     653 ..     536     659 .. 0.76
   2 ?   -3.8   0.1       3.5     1e+04     102     129 ..     699     722 ..     684     730 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00018
     DUF4897   6 ydskyeydysgsavlttkaelkfkdekkeeeyieqYqkaseetfekylsqlseevgreikvv......slessateregileveEkavlkglvkve.ng 97 
                  +s+++   s+ +vl+++ e+  ++ +  +e+i q++k+ e +++k+ +++ +++   ++ +      ++e  +t+++++  v E+ +l+ + ++  ++
  KKY21469.1 540 ANSELREKRSTMVVLDAQKEIVVRELEVLTEHIAQFKKTTEPDLNKFANSVLRDFSEALVKLrdsyapKIEHALTQKQEV--VAEISTLNQMKENLlQE 636
                 56788888999******************************988888777766666555432120011455555555554..67999999998888788 PP

     DUF4897  98 vvetslgdiklnlagds 114
                   ++sl++ +l   +++
  KKY21469.1 637 FEQLSLKNAQLAELNNT 653
                 8899****999999998 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.5
     DUF4897 102 slgdiklnlagdselvvslPkdaklisv 129
                 s+ d+++     s+++ + P++a+ i+v
  KKY21469.1 699 SIADMSMT----SSVTAVQPEEAEPITV 722
                 44444443....3455577777777766 PP

>> UPF0449  Uncharacterised protein family UPF0449
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.5     0.015        44      48      90 ..     511     553 ..     478     563 .. 0.74
   2 ?    5.7   1.4    0.0069        21      51      97 ..     603     649 ..     576     659 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.015
     UPF0449  48 seeedleaeveelYeqvrtylelnerLeeakeeLkqkceeLkt 90 
                 ++e + + e e++  +++++++ +++++ a++eL++k+ ++ +
  KKY21469.1 511 RRERQKTLEKERRVSELEAMVNSTTEIKLANSELREKRSTMVV 553
                 455566667999999**********************998865 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0069
     UPF0449  51 edleaeveelYeqvrtylelnerLeeakeeLkqkceeLktageeLee 97 
                 ++   ++e+   q ++ ++    L++ ke+L q++e+L+  + +L e
  KKY21469.1 603 DSYAPKIEHALTQKQEVVAEISTLNQMKENLLQEFEQLSLKNAQLAE 649
                 45556688888899999999999999999999999999888888765 PP

>> DUF4164  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   1.5       4.1   1.2e+04      29      43 ..     519     533 ..     508     573 .. 0.53
   2 ?   12.8   0.8   3.8e-05      0.11       7      77 ..     588     659 ..     583     664 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.1
     DUF4164  29 eaerkrdeleaeiea 43 
                 e+er  +elea ++ 
  KKY21469.1 519 EKERRVSELEAMVNS 533
                 444444444444432 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 3.8e-05
     DUF4164   7 eaaltrLeaaldsLEkavdrrleaerkr.deleaeiealgedrsRLaeeLdqaearaarleevnrEvsrrLk 77 
                 +++l++ ++al +L ++   ++e   ++ +e+ aei+ l++ ++ L +e+ q + ++a+l+e+n+ + ++++
  KKY21469.1 588 NSVLRDFSEALVKLRDSYAPKIEHALTQkQEVVAEISTLNQMKENLLQEFEQLSLKNAQLAELNNTLVHQIQ 659
                 5789999***************98765559**********************************99999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1039 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1363  (0.0760221); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.96u 0.34s 00:00:01.30 Elapsed: 00:00:00.56
# Mc/sec: 5619.21
//
Query:       KKY21470.1  [L=364]
Description: hypothetical protein UCRPC4_g03733 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       958  (0.053433); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2400.79
//
Query:       KKY21471.1  [L=458]
Description: putative dash complex subunit ask1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-05   24.0   3.1      0.014   15.2   0.2    2.4  2  DASH_Ask1  DASH complex subunit Ask1


Domain annotation for each model (and alignments):
>> DASH_Ask1  DASH complex subunit Ask1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.3   6.6e-05       1.2       1      13 [.      19      31 ..      19      32 .. 0.95
   2 !   15.2   0.2     8e-07     0.014      49      64 .]      38      53 ..      35      53 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 6.6e-05
   DASH_Ask1  1 leqldqeitltLq 13
                le+l+q+itltLq
  KKY21471.1 19 LERLEQSITLTLQ 31
                8***********9 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 8e-07
   DASH_Ask1 49 kfwksffeqsAnveLs 64
                 fwk+ffe+sAnv+Ls
  KKY21471.1 38 LFWKQFFESSANVSLS 53
                69************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3170.68
//
Query:       KKY21472.1  [L=842]
Description: putative 3-ketoacylketothiolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-56  191.9   2.8    1.7e-55  188.2   2.8    2.3  1  Thiolase_N     Thiolase, N-terminal domain
    1.6e-41  140.8   0.2    3.4e-41  139.7   0.2    1.6  1  Thiolase_C     Thiolase, C-terminal domain
    3.9e-20   71.6   0.0    7.5e-20   70.7   0.0    1.5  1  La             La domain
    2.1e-09   37.0   0.1    5.8e-09   35.6   0.1    1.8  1  RRM_1          RNA recognition motif. (a.k.a. RRM, RBD, or RN
     0.0073   15.9   2.0      0.015   14.8   1.0    2.1  2  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
  ------ inclusion threshold ------
      0.031   14.1   1.3       0.82    9.6   0.0    3.0  3  ACP_syn_III    3-Oxoacyl-[acyl-carrier-protein (ACP)] synthas
      0.056   13.6   0.1       0.43   10.8   0.0    2.4  2  ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthas


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.2   2.8   6.7e-59   1.7e-55       1     260 []      31     264 ..      31     264 .. 0.92

  Alignments for each domain:
  == domain 1  score: 188.2 bits;  conditional E-value: 6.7e-59
                 EEEEEEEEE--EE.TTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigk.fggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqs 98 
                 +vi  a+rtp+ k ++g +kd++ e L   +lk++l++ ++dpe +++v +Gnv +a   + +ar+a+l+ag + ++ a+ vn++csSglkav ++a++
  KKY21472.1  31 IVITLAVRTPLAKgKKGGFKDTELEVLIYLTLKEVLKQSKLDPEVIEDVCCGNVSNAK-AAYMARAAMLAAGYSVNAGASSVNRFCSSGLKAVQDIANQ 128
                 69999********9****************************************9875.5779************************************ PP

                 HHTTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTTTB CS
  Thiolase_N  99 iaageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkdei 197
                 i +g++d+ va+G+Esm++   + + +  s++  ++++a d+++p+           G t+en+ ++++isRe+qd+fA++s ++a+ aqkag F+dei
  KKY21472.1 129 IISGSIDCGVAIGAESMTEGGDRLE-KPFSEVITQNSQATDCMMPM-----------GWTSENVGADFNISREDQDKFAAESFRRAEVAQKAGWFDDEI 215
                 ************************8.999**************888...........****************************************** PP

                 E-EEEEESSSEEEE-S-TTS-TT--HHHHHTS-BSSSTTSS-BTTSB--BEEEEEEEEEEEHH CS
  Thiolase_N 198 vPvkvkgkkgkktvdkdeairsevtaekLaklkpaFkkeGtvtAgnasqisDGaaavllmses 260
                  P+ +k k+ k      ++  +evt+ k +           +t gnasq++DGaaa+llm++s
  KKY21472.1 216 TPIITKIKDPK------TGQVKEVTLTKDEG--------PRTTGGNASQVTDGAAAILLMKRS 264
                 ******98866......22222233222222........2569*****************985 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.7   0.2   1.3e-44   3.4e-41       3     121 ..     273     391 ..     271     393 .. 0.97

  Alignments for each domain:
  == domain 1  score: 139.7 bits;  conditional E-value: 1.3e-44
                 -SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--GGGBSTT--HHHH-B-TTTHHHHHHHHHHHHHHHCT CS
  Thiolase_C   3 plakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldlekvNvnGGaialGHPlGasGaRivvtllselkkeg 101
                 +lak+   +++gv+p+ +g+gP+ ai+k+l+k  lt e+id+fEinEAFa+ a++++++l+ld ekvN +GGaialGHPlGa+GaR++ t+lse ++ +
  KKY21472.1 273 ILAKFCGATVAGVPPRVMGIGPTAAIPKLLSKFNLTKEEIDIFEINEAFASMAVYCLRELGLDHEKVNPRGGAIALGHPLGATGARQICTILSEARRTK 371
                 78999999******************************************************************************************* PP

                 TSEEEEEEEETTTEEEEEEE CS
  Thiolase_C 102 gklgvaalCigggqgvalvi 121
                 +k+ ++++Cig+gqg+a ++
  KKY21472.1 372 KKILLTSMCIGTGQGMAGLF 391
                 ***************99765 PP

>> La  La domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0   2.9e-23   7.5e-20       1      58 [.     524     580 ..     524     581 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 2.9e-23
                 HHHHHHHHHHTT-TTT-HHHHHHHTTSTTS---HHHHHTSSHHHHHHSSHHHHHHHHH CS
          La   1 ilkQvEfYFSdeNLpkDkFLrkkmdkdpegwVplsliasfkrmkkltkdveliaealr 58 
                 i+kQvEfYFSd+NLp DkF+++k+  ++++ V+l++i+sfkrm++++ + ++i++al+
  KKY21472.1 524 IRKQVEFYFSDSNLPLDKFMFNKVGGTENNAVELETICSFKRMRHFQ-PRSAIVAALK 580
                 89*********************************************.88******98 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.1   2.3e-12   5.8e-09       2      60 ..     626     686 ..     625     697 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 2.3e-12
                 EEESE..TTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHT CS
       RRM_1   2 fVgnL..ppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealn 60 
                 +V+++   +  t+ +++++F ++Gp + i+l r+ ++++ kg  fVeF+s+e ++k l+ l+
  KKY21472.1 626 YVKGFgqEQPSTQFDIEAFFAPYGPTNAIRLRRKdNDKSFKGSVFVEFDSEETMKKFLD-LD 686
                 666664444568889******************************************99.65 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.0     6e-06     0.015     154     207 ..      94     147 ..      62     154 .. 0.85
   2 ?   -2.7   0.0       1.3   3.4e+03     238     253 .]     251     266 ..     242     266 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6e-06
                    HHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---S CS
  ketoacyl-synt 154 iagrisyalglrGpsvtvdtACsSslvavhaavqslrsgeadvalaGGvelllt 207
                     a++++  + + + + +v   CsS+l+av+ + +++ sg +d+ +a G+e +++
     KKY21472.1  94 RAAMLAAGYSVNAGASSVNRFCSSGLKAVQDIANQIISGSIDCGVAIGAESMTE 147
                    466777778888888899999*****************************9876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.3
                    BB-EEEEEEEEECHHH CS
  ketoacyl-synt 238 lGEGvGavvLkrleda 253
                    +++G++a++L+++++a
     KKY21472.1 251 VTDGAAAILLMKRSKA 266
                    689*******999886 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00032      0.82       3      42 ..     111     150 ..     110     159 .. 0.91
   2 ?    1.7   0.0     0.094   2.4e+02      51      65 ..     250     264 ..     241     279 .. 0.78
   3 ?   -2.4   0.1       1.7   4.4e+03      11      27 ..     791     807 ..     788     808 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00032
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGCS- CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetlskilD 42 
                  +n  Cs+ + a++  ++ i sg++ + + igae +++  D
   KKY21472.1 111 VNRFCSSGLKAVQDIANQIISGSIDCGVAIGAESMTEGGD 150
                  6889******************************998766 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.094
                  TB-EEEEEEEEEEES CS
  ACP_syn_III  51 lfGDGAgAvvlease 65 
                   + DGA+A++l +  
   KKY21472.1 250 QVTDGAAAILLMKRS 264
                  568*******99863 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.7
                  HHHHHHHHHHHHTTS-S CS
  ACP_syn_III  11 vyalsvAdaliesgaak 27 
                  + a+++A+a++e+ +ak
   KKY21472.1 791 TSAVAQAKAFVEAEKAK 807
                  67999*******99987 PP

>> ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00017      0.43       2      80 ..     303     384 ..     302     393 .. 0.76
   2 ?   -0.8   0.0      0.67   1.7e+03      43      64 ..     786     807 ..     775     814 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
                    HHTT--GGG-SEEEE-SSSHHHHHHHHHHHT--GGGB.....--TH.HHH-B-GGGHHHHHHHHHHHTTSS-TT-EEEEEE..EETT CS
  ACP_syn_III_C   2 ekagltpedidalvphqanlriidavakklglpeekv.....vvnl.deyGntsaasiplaLdeaveegklkpgdlvllvg..fGaG 80 
                    +k +lt+e+id + ++ a +++    +++lgl+ ekv     ++ l + +G t+a  i+  L+ea +++     +++ll++  +G G
     KKY21472.1 303 SKFNLTKEEIDIFEINEAFASMAVYCLRELGLDHEKVnprggAIALgHPLGATGARQICTILSEARRTK-----KKILLTSmcIGTG 384
                    6779*******************************874444456666899***************9955.....3344433114444 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.67
                    HHH-B-GGGHHHHHHHHHHHTT CS
  ACP_syn_III_C  43 deyGntsaasiplaLdeaveeg 64 
                    +e +ntsa+ +  a+ ea + +
     KKY21472.1 786 REAANTSAVAQAKAFVEAEKAK 807
                    6789*******99999998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (842 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1535  (0.0856155); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.01u 0.35s 00:00:01.36 Elapsed: 00:00:00.55
# Mc/sec: 4588.57
//
Query:       KKY21473.1  [L=740]
Description: putative heat shock protein hsp88 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.2e-162  540.1  13.4   5.2e-162  540.1  13.4    2.8  2  HSP70     Hsp70 protein
      1e-10   41.0   0.1    2.3e-10   39.8   0.1    1.5  1  MreB_Mbl  MreB/Mbl protein
  ------ inclusion threshold ------
          2    8.9   9.0        8.7    6.8   0.1    3.4  3  FtsA      Cell division protein FtsA


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  540.1  13.4  8.7e-166  5.2e-162       1     598 [.       3     672 ..       3     673 .. 0.95
   2 ?   -7.5   9.8         3   1.8e+04     504     548 ..     687     717 ..     672     740 .] 0.35

  Alignments for each domain:
  == domain 1  score: 540.1 bits;  conditional E-value: 8.7e-166
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEEE CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkavv 99 
                 v+G+D G  ++ ++v+++++i++i+ne +nr+tPs+v+F++k r++Ge+Ak+q ++n kntv s+Krl Gr+ +dpe+  e + ++  +v   ng++++
  KKY21473.1   3 VVGVDFGSSSTKIGVARNKGIDIITNEVSNRSTPSLVGFGPKARYLGESAKTQEISNLKNTVSSLKRLAGRSITDPEIAIEQEYITAPLVDV-NGQVGA 100
                 79****************************************************************************************99.****** PP

                 EEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSS......SCEEEEE CS
       HSP70 100 eveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkd......kernvlv 190
                 ev++ g+  kft++q+ am L+k+k+ta++ l+ +v+d+v++vPa+f+d qR+++ dA+++AGL++lR++N++TA al YG+ k d      k+r v++
  KKY21473.1 101 EVTYLGKkeKFTATQLIAMYLTKIKSTASTELKLPVSDVVLSVPAWFTDVQRRSMLDATEVAGLKCLRLINDTTATALGYGITKLDlpeadaKPRRVIF 199
                 ******999****************************************************************************************** PP

                 EEEXSSXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEE CS
       HSP70 191 yDlGggtfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdl 289
                 +D+G + +++Si+e++kG + vk+T +D h+GG++fD+alv+hl++efk+k +id++++ ka+ r+  aaek+Kk LS+  +++++++ie++++ +kd+
  KKY21473.1 200 VDVGYSDYTASIVEFKKGELAVKSTVCDRHFGGRNFDKALVDHLAAEFKEKFKIDIKTNAKAVTRVAAAAEKLKKVLSA--NASAPISIESLMD-DKDV 295
                 *******************************************************************************..899**********.9*** PP

                 EEEEEHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCCEEEE CS
       HSP70 290 seklsRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqagvlsgeeevkdllllD 388
                 +  ++R+++e +v++ll+r + p+e+al++aklk+e+id++++vGG tR+P+++e++ ++fg+ +s t+n+Dea+a+G+A+ +++ls+ ++v+d+++ D
  KKY21473.1 296 KAFVKREELEAMVQPLLDRATAPIEQALAEAKLKVEDIDAIEMVGGCTRVPAIKERIGKFFGRALSYTLNQDEAIARGCAFSCAILSPVFRVRDFSVHD 394
                 *************************************************************************************************** PP

                 BESS-EEEEETTTEEEEEES...TTCBSSEEEE.EEEEESSTTSS.SEEEEEEESSSSBGGGS..EEEEEEEEECESSCSTT.CSEEEEEEEEETTSCE CS
       HSP70 389 vtpLslgietlggvmtklie...rnttiptkks.qvfstaadnqt.aveievlqgerelvkdn..kllgsfeldgippaprG.vpqieVtfdidanGil 479
                 ++   + ie +++    + +   + t++ + +  +++++++++++ ++++e+ ++++e+++      +g+f+++g+++  +      + + +++ +G+l
  KKY21473.1 395 IVT--YPIEFTWEQSPDIPDedtNLTVFNKGNVmPSTKILTFYRKqPFDLEARYAKPEQLPGKinPWIGRFSVKGVKADEKNdFMICKLKARLNLHGVL 491
                 *99..********97655441104466777776899*******9999************9764439***********988883455589********** PP

                 EEEEEETTTCCEEEEEEECCSSSBHHHHHH.........................................................HHHHHHHCHHHH CS
       HSP70 480 tvsakdketgkeeeitieaseglseeeiek.........................................................mvkdaeesaeed 521
                 +v++ +  +++e e++i ++++  e+++                                                           + ++++++  ed
  KKY21473.1 492 NVESGYYVEDVEVEEPIPEEKKEGEKKEGDvssesatsksslkrnlqametdeaakpktrkvkkqvrkgdlplssgtasldqatkdaLAEKEQQMFMED 590
                 **************9999988854444444488****************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHH.GGGSTHHHH....HHHHHHHHHHHCHTTSSCHHHHHHHHHHHHHHHHHHHHHHH CS
       HSP70 522 kkkkeaieakneaeelvyslekkleee.aekvseaek....ekvesaieeLkeeleeeekeeieakteelkkvvekiaekly 598
                 k  +++ ++kne+e+++y+l++kl+e+ ae++se+ek    ek+e+++++L+e +e++ k+++ ak++e++ v+ +i+++++
  KKY21473.1 591 KLVADTEDKKNELESYIYELRGKLDEQyAEFASEDEKaklrEKLEKSEDWLYEDGEDATKAAYVAKMDEIRFVAGPIVQRYL 672
                 ***************************9999999999999999******************************999999875 PP

  == domain 2  score: -7.5 bits;  conditional E-value: 3
                 HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       HSP70 504 eeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleee 548
                 e              e+ +kk+e++eak++aee ++++++  + e
  KKY21473.1 687 E--------------EAAAKKREEAEAKKKAEEEAKKAAEPKKGE 717
                 1..............122223333333333333333333222222 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.1   3.9e-14   2.3e-10      77     316 ..     120     375 ..     108     382 .. 0.74

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 3.9e-14
                 HHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT-...-TTSSS-E....EEEEE-SS..-EEEEEEETTE CS
    MreB_Mbl  77 llkyfikkvkkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGagl...pveepsgn....mvvdiGgg..ttevavislgg 166
                  l ++ + ++++ +l+ + vv++vP   t+v+rr + +a++ aG +   li+++ a A+G g+   ++ e+ ++    + vd+G    t++++    g+
  KKY21473.1 120 YLTKIKSTASTELKLPVSDVVLSVPAWFTDVQRRSMLDATEVAGLKCLRLINDTTATALGYGItklDLPEADAKprrvIFVDVGYSdyTASIVEFKKGE 218
                 3334444444466678899*****************************************986322454444323332789**9762256666667799 PP

                 EEEEEEE...S-SHHHHHHHHHHHHHHHHS..EE--HHHHHHHHHHH-BSS--HHHH.EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHH CS
    MreB_Mbl 167 ivtsksv...rvaGdeldeaiikyirkkyn..lliGertaekikieigsavkeeeee.kmeikGrdlvtglpkevevsseevrealkepvsaiveavke 259
                 + ++++v   + +G ++d+a+++++  +++    i  +t  k  +++++a+++ ++  + + +    ++ l     v++   re l+ +v+ +++ +++
  KKY21473.1 219 LAVKSTVcdrHFGGRNFDKALVDHLAAEFKekFKIDIKTNAKAVTRVAAAAEKLKKVlSANASAPISIESLMDDKDVKAFVKREELEAMVQPLLDRATA 317
                 998888866569************998885336788888888778887777665554477766666677777777777776677777777777777777 PP

                 HHHTS-HHHHHHHHH.H-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHH CS
    MreB_Mbl 260 vLektppeLaadivd.rgivltGGgallkgldkllseetglpvkvaedpltcvakGtg 316
                  +e++ +e    + d  +i ++GG++ +  +++ + + +g   +++ +  +++a+G++
  KKY21473.1 318 PIEQALAEAKLKVEDiDAIEMVGGCTRVPAIKERIGKFFGRALSYTLNQDEAIARGCA 375
                 77777666666665535899********************999999999999999986 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0019        11       1      24 [.       4      24 ..       4      37 .. 0.83
   2 ?    6.8   0.1    0.0015       8.7       2      86 ..     199     356 ..     198     381 .. 0.63
   3 ?   -3.8   0.9       2.9   1.8e+04      39      49 ..     698     708 ..     674     725 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0019
                EEEEE-SSSEEEEEEETTEEEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedgalvhlr 24
                ++vD+G+++t++ va+++++   +
  KKY21473.1  4 VGVDFGSSSTKIGVARNKGI---D 24
                69***************754...3 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0015
                 EEEE-SSSEEEEEEETTE...EEEEEEES-..-HHHHHHH...................HHHHHT--HHHHHHHHHHH--S--................ CS
                 xxxxxxxxxxxxxxxxxx...xxxxxxxxx..xxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxx................ RF
        FtsA   2 lvDiGagktdvavaedga...lvhlrvigv..ggngitkd...................iakalrtaveeAerikikyGsala................ 60 
                  vD+G +  +++++e ++    v+++v     gg++++k                     aka+    ++Ae++k+      +                
  KKY21473.1 199 FVDVGYSDYTASIVEFKKgelAVKSTVCDRhfGGRNFDKAlvdhlaaefkekfkidiktNAKAVTRVAAAAEKLKK-VL---Sanasapisieslmddk 293
                 69*****9999999986543333344443378********888888887777777777767777777788888882.22...23334566665555555 PP

                 ..EEEEEHHHHH...........................................GGGGSTTHHHHHHHHH CS
                 ..xxxxxxxxxx...........................................xxxxxxxxxxxxxxxx RF
        FtsA  61 ..ekeigrkels...........................................ggsalpnleelaeral 86 
                   +        +                                           g + +p ++e + + +
  KKY21473.1 294 dvK--------AfvkreeleamvqplldratapieqalaeaklkvedidaiemvgGCTRVPAIKERIGKFF 356
                 543........033344444777777777777777777777777777778888888888888888777775 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 2.9
                 HHHT--HHHHH CS
                 xxxxxxxxxxx RF
        FtsA  39 kalrtaveeAe 49 
                 +a ++a eeA+
  KKY21473.1 698 EAKKKAEEEAK 708
                 23333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2030  (0.113224); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.55
# Mc/sec: 4085.61
//
Query:       KKY21474.1  [L=650]
Description: putative chitin synthase d [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-25   87.7   2.4    3.3e-24   85.4   3.0    1.7  2  Chitin_synth_2   Chitin synthase
    3.9e-17   62.8   4.3    9.2e-17   61.6   4.3    1.6  1  Glyco_trans_2_3  Glycosyl transferase family group 2
    1.9e-08   34.5   0.0    4.5e-08   33.3   0.0    1.7  1  Glyco_tranf_2_3  Glycosyltransferase like family 2


Domain annotation for each model (and alignments):
>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.13   7.9e+02      32      58 ..       2      28 ..       1      36 [. 0.82
   2 !   85.4   3.0   5.6e-28   3.3e-24     204     512 ..     108     408 ..      85     423 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.13
  Chitin_synth_2 32 taysegeeglrttldslastdyddkrk 58
                    ++y e  + l t+++sl s dy+    
      KKY21474.1  2 PVYKEHPDVLLTAINSLVSCDYPAACI 28
                    789*******************98655 PP

  == domain 2  score: 85.4 bits;  conditional E-value: 5.6e-28
  Chitin_synth_2 204 ivlmvdadtkvapdsltrlvaalv....kdpeilglcGetkiankkeswvtaiqvfeyyishhlskafesvfGsvtclPGcfslyrikaakgadg 294
                      +l +d+d  +   ++++++ ++     +  ++l++ G  + + +k+s +t++q  ey       ++ es  G+vtclPG ++l r  a ++  +
      KKY21474.1 108 FILFIDSDCILDKICIQNFLYEMElkpgSKRNMLAMTGVITSTTEKHSLITLLQDMEYLHGQLFERSVESGCGAVTCLPGALTLLRFSAFRKMAK 202
                     5788899988888888888888862222456899*****999***********************************************999444 PP

  Chitin_synth_2 295 kwvPilvspeiveeysenvvdtlhkknllllGedrylttl.llktfpkrktvfvpqakcktvaPdtfkvllsqrrrwinstvhnllelvlvrdlc 388
                     +    +++       + ++ + l      +lGedr+lt l ++   ++++  +  +a ckt a  t++ ll qrrrw    + n  e+ +++d+ 
      KKY21474.1 203 Y---YFAD-------TAEQCEDLFDFAKCHLGEDRWLTHLfMIGAKERYQIQMCTNAFCKTEAVQTYRSLLKQRRRWFLGFITN--EVCMLTDFR 285
                     3...3333.......23456778888889*********9846677888999999****************************99..777788877 PP

  Chitin_synth_2 389 GtfcfsmrfvvfieligtvvlPvaiaftlylivasilksklvpviplvllaivlGlpailivltarkle.yvawll.vyllalPifnfvlPlyaf 481
                         + +  vv   ++   +   a++f ++ ++ +i++s+ ++ +p+ ++a+ lGl+ +l++    kl  + awl  v ++  P fn++  +y  
      KKY21474.1 286 LWKRYPLLCVV--RFMQNTIRTTALLFFIM-VISIITTSNKIKNLPVGFIAVSLGLNYLLMLYFGFKLRrFKAWLYpVMFIVNPFFNWLYMVYGI 377
                     77777665555..45667777777777654.55667778999*****************999877776525678854677788************ PP

  Chitin_synth_2 482 whlddfswGetrvveGekkkkaageaegefd 512
                     +     +wG  r  +G  + +++ ++  e+ 
      KKY21474.1 378 FTAGQRTWGGPRADAGTAGGHTTAQEAIEYA 408
                     *************999988776666666655 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   4.3   1.5e-20   9.2e-17       2     192 ..     109     315 ..     108     379 .. 0.81

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 1.5e-20
  Glyco_trans_2_3   2 illlDaDtvlppdclreiaaela.sp....evaivqgpvlvm.nvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalqevg. 88 
                      il++D+D  l+  c+  +++e++  p    ++ +++g ++ + +++++++ l+++++    ++ ++v +++g v+ ++G+ ++lr sa+++++ 
       KKY21474.1 109 ILFIDSDCILDKICIQNFLYEMElKPgskrNMLAMTGVITSTtEKHSLITLLQDMEYLHGQLFERSVESGCGAVTCLPGALTLLRFSAFRKMAk 202
                      9**********************7788877777888999987699************99999****************************9999 PP

  Glyco_trans_2_3  89 ............gwdgdessvsEDfdmglrl...qrkGyrvrfvpeslvkekspltlraalrQrkRwayGceleklillvrllgylgsl.lwsa 166
                                   +d+   +++ED  +       +++ y++ +++ +++k++   t+r  l+Qr+Rw++G      i  ++ + +l  + lw+ 
       KKY21474.1 203 yyfadtaeqcedLFDFAKCHLGEDRWLTHLFmigAKERYQIQMCTNAFCKTEAVQTYRSLLKQRRRWFLGF-----I--TNEVCMLTDFrLWKR 289
                      9999999999999999999*****98887774434666********************************4.....3..555555555545666 PP

  Glyco_trans_2_3 167 lplhlallllfsllalalvlllllll 192
                      +pl++++ ++++ +++ ++l+++++ 
       KKY21474.1 290 YPLLCVVRFMQNTIRTTALLFFIMVI 315
                      66666666666655544444433332 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   7.6e-12   4.5e-08       9     229 ..       2     271 ..       1     272 [. 0.79

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 7.6e-12
  Glyco_tranf_2_3   9 ptfneed.vlgevlesllaqeypr..vevvvvvdesd..................aetlevaeelaaalpdvrvrvvvnarnlgstgksralne 81 
                      p+++e++ vl+  ++sl++++yp+  ++v++  d++d                  ++     + +   + ++r++v + ++ +g   k+   + 
       KKY21474.1   2 PVYKEHPdVLLTAINSLVSCDYPAacIHVFLSFDGDDidelylttldrlgipitmKH---IPRSIDVSYNGARITVSRFPH-GG---KRKCQKS 88 
                      778888769999**********88899999999999988888655554444433222...234444577789999888888.44...5555566 PP

  Glyco_tranf_2_3  82 alravk...sd........lvllvDdDtvvePdtlkrllqff.ltp....kvgavgtpvfll.nrstlvsalgalefaerhlrflaarralg.v 157
                      +++ ++   ++        ++l++D+D+++++  ++ +l  + l p    ++ a+++   +     +l++ l+++e+ + +l ++++    g v
       KKY21474.1  89 TFKLIDkihTEylkrndnlFILFIDSDCILDKICIQNFLYEMeLKPgskrNMLAMTGVITSTtEKHSLITLLQDMEYLHGQLFERSVESGCGaV 182
                      6666555543355556678******************9998885556655777777777665256688********999999777777666747 PP

  Glyco_tranf_2_3 158 ltlnGsgslirrevlkele.............gldp.lflltdDyelglrlrr...agfrtayvpgaavrevfpsslkayikqrnRwvy 229
                      ++l G+++l r + ++                ++d+ + +l++D  l+  ++    ++++++++  a++ ++  ++   + kqr+Rw  
       KKY21474.1 183 TCLPGALTLLRFSAFRKMAkyyfadtaeqcedLFDFaKCHLGEDRWLTHLFMIgakERYQIQMCTNAFCKTEAVQTYRSLLKQRRRWFL 271
                      9999***************************9899999******977766665566*******************************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.54
# Mc/sec: 3595.51
//
Query:       KKY21475.1  [L=802]
Description: putative phospholipase a2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-26   91.1   0.0    1.3e-25   89.8   0.0    1.6  1  PLA2_B    Lysophospholipase catalytic domain


Domain annotation for each model (and alignments):
>> PLA2_B  Lysophospholipase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0   7.4e-30   1.3e-25       1     350 [.     225     593 ..     225     599 .. 0.70

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 7.4e-30
      PLA2_B   1 iaiavSGGGyramltgaGvlkAldsRtdnatglgGlLqsatYlaGlsGgsWl....vgslavNnftsvqelskk.keddsvweleksilnpeglelvkn 94 
                 iai +SGGG+ra++ g+    + +        ++Gl +++tY aG+sG+ Wl     +sla     ++ +l ++ k+ ++v     +    + +++++n
  KKY21475.1 225 IAICGSGGGLRALVAGTSSYLSAQ--------EAGLWDCSTYTAGVSGSCWLqtlyFSSLAGQ---NHRKLIQHlKNRINVHIAFPPAALKAVTTAPTN 312
                 89************8865544444........7******************722224566554...455555544445555544444444445566666 PP

      PLA2_B  95 ikrydeivdevekKkdagfnvsltDiwGralseklve....aeeggvnltlsslkdaekfqeaemplPiivadgrk.....................pg 168
                     + +v++++   +a f   l D++G++l+ +l+     ++  + +l+ls+ +  e++  +  p+Pi +a   +                     ++
  KKY21475.1 313 KYLLSGFVEKLKGDPAASF--GLVDVYGMLLAARLLVpkgeLQVCDRDLKLSNQR--EHVDGGAHPMPIYTAVRHEipieeeekklveegksstddvKE 407
                 6666777777777777776..589*******999876221123334566677666..999************988889999999999999888744333 PP

      PLA2_B 169 etvinlNatvfEfsPyelgswdaklnsFvpveylGtklsnGt..vvkkgkcvagfd...naGflmgtsstlFnevlleinsts.......mlesllkel 255
                     ++  ++fEf+Pye+    ++l++ +p+  lG ++  G+  v+++g   ++f     +G++++++ +  ++   ei  +         l+sl++e+
  KKY21475.1 408 RAQKEAWFQWFEFTPYEFF--CEELEAGIPIWALGRTFRDGHnaVLETGLALPEFRiplLMGVWGSAFCATLSHYYKEIRPALiglagfdGLDSLIEER 504
                 33334445899******96..9*******************7225577778888853437999999888877777777777763332233344444444 PP

      PLA2_B 256 lkkllkdlsedsedisqyapnpfkdaeee.nqnatqsivesktLdlvdggedgqniplvpllqkerevdvifaldnsadteeswpdgvslvatyeR 350
                  ++l+k    d   +     n   + ++   ++  +s+ ++++++l+d g   +n+p+ pll++ r+vdvi+a+d+sad+++   +  s+v+ y +
  KKY21475.1 505 NEDLVKLHPIDPATVP----NYVVGLKDKlPDTCPASLFHTDHIQLMDAGMS-NNLPIYPLLRPGRDVDVIIAFDASADVKR--ENWLSVVDGYAK 593
                 4444443333332222....4445555442566677**************86.69************************987..455666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.35s 00:00:01.19 Elapsed: 00:00:00.55
# Mc/sec: 4373.32
//
Query:       KKY21486.1  [L=653]
Description: putative mfs phosphate transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-25   88.1  21.0    7.8e-23   81.0  21.0    2.1  1  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0  21.0   4.4e-27   7.8e-23      11     452 .]     110     546 ..     102     546 .. 0.80

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 4.4e-27
                 HHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT.SS-TGGGGG CS
    Sugar_tr  11 lfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk.nsvevlivg 108
                 l+gY ++ ig    l +++ + +++ +++ +++   ++ ++  + + G i+G++f+g +gd++GR+++l+  a++++ig ++  a+ g  ++ +v++  
  KKY21486.1 110 LEGYVLFSIGNLKPLFEKVWKACWDDNTTCTKT---WVQAVDYLEICGIICGQIFVGVIGDWLGRRWGLIQDATIMFIGLIMLTASWGVtENGWVICYV 205
                 79*************************985554...77777777888*********************************9999998767777777766 PP

                 ..HHHHHHHHHHHHHHHHHHHHTTS..........-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-.TTHHHHHHHCCHHHHHHHHHHGGGS--- CS
    Sugar_tr 109 ..RvlvGigvGlasvlvPmyisEiA..........pkklRgalvslyqlaitfGilvaaifglglnktsn.adgwrillglqlvpallllilllflPES 194
                    ++  +gvG+++ ++ +   E+A             +Rg+ v+   l+  +G+++ +++   l  +    +g +   ++++  +  +++++  +   
  KKY21486.1 206 wsLFFYSFGVGGEYPMTATSGMENAvgsgkistkeDRLHRGRKVTSAFLMQGWGQFFNQVILILLLLIFHhGSGNPPYSAVAAQYTYRVSFAIPAVG-- 302
                 55899*************************998766779********************99988855555345555555555555555555555555.. PP

                 HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH.... CS
    Sugar_tr 195 PrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks.... 289
                   +lv  +       + +k      a+r+l+  k++++ +      ++ +l+ + t++ + l++ +  +f + +    +  + ++++  +  +++    
  KKY21486.1 303 TLWLVYYR-------I-YK---MRSASRQLQVAKNKNKVT----GYDVASLKLTLTYFGPRLLATAFGWFANDVFFYGNKLFQSEFIAVISPNNDslmp 386
                 45665544.......2.22...234444444444444444....3367789999999999999999999976555444555555555555555559999 PP

                 .HHHHHHHHHHHHHHHHHHHHHHHH..S-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHH CS
    Sugar_tr 290 .llvtiivgvvnfvatfvaiflvdr..fGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRs 385
                   l++++ + v  v   +a f++d    GR+ + ++G+++++i+fv+ g   + + ++      ++ ++++l  ++ ++g++ v +++++E+fp+ +R+
  KKY21486.1 387 sWLWNLVNVGVELVGYYMASFFIDNklYGRKWMQVVGFLMCFIMFVVPG-FKYNYYTQP-ENIHAFQAMYFLSSFFNQFGPNAVTFLVAAEVFPTPIRA 483
                 99*********************96558********************9.555555554.2234444555555566679******************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 386 kalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 +a  +++a+  l  +l +++f +it +      f++   + +++++ +++f+p t g++l+e+e+ +
  KKY21486.1 484 SAHGFSAACGKLGALLAAVMFNYITVQQR----FYIVPWFGLAGVLTTVLFLPDTTGLDLKEQERRW 546
                 ***************************99....8888999999********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.53
# Mc/sec: 3708.20
//
Query:       KKY21487.1  [L=414]
Description: putative sporulation associated protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-88  294.9   0.0    7.6e-88  294.6   0.0    1.1  1  DUF2235   Uncharacterized alpha/beta hydrolase domain (DUF223
  ------ inclusion threshold ------
       0.18   12.2   0.1       0.55   10.6   0.0    1.9  2  Kringle   Kringle domain


Domain annotation for each model (and alignments):
>> DUF2235  Uncharacterized alpha/beta hydrolase domain (DUF2235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.6   0.0   8.5e-92   7.6e-88       1     288 []      35     351 ..      35     351 .. 0.91

  Alignments for each domain:
  == domain 1  score: 294.6 bits;  conditional E-value: 8.5e-92
     DUF2235   1 krlvlcfDGTgnkfdgdteesdsNvlklfralkrsdkdkkeqvvyYqpGiGtetyel.......lsslksaleklldgafgsgldehvveaYeflmrny 92 
                 krlvlcfDGTgn+ +g+  ++d+Nv+k+++ +++s+k +  q++yYqpGiGt t +         ++l++ ++k+ld+a g  +d+hv+++Y+flm++y
  KKY21487.1  35 KRLVLCFDGTGNSYSGT--TADTNVVKIYQKFDKSTK-D--QFHYYQPGIGTYTLDPdslnlnpCEKLTQNVKKTLDQAAGLMFDAHVMAGYRFLMEHY 128
                 89**************9..56*************995.4..9*********66654499*****9********************************** PP

     DUF2235  93 epgDeIylfGFSRGAytaRalagmlekvGllskgneeqvpfayklyekrekkkdkekeeeskekekkaekkekekasrsevkikflGvfDTVgslGipe 191
                  +gD+I++fGFSRGA+taR+la+m++ vG+ls+gnee+v+f yk y++  + k+  ++ +s+e+ +k  +++k++++r++v   flG++DTV+s+G++ 
  KKY21487.1 129 GSGDRIFIFGFSRGAFTARFLARMICAVGILSRGNEEMVRFTYKRYQDSIT-KSGMYKGRSAEEITKDLHNFKSTFCRTNVMPYFLGLWDTVNSVGVFG 226
                 ************************************************766.67777777777777899*****************************9 PP

     DUF2235 192 sallekaakklpftdaklsssvkharhalaldErrakFkptlwekekekeekee.....................eekeqdlkevwFpGvHsdvGGGye 269
                  + ++++ ++ + +d+ + +++ ++rha+a+dErr kF+p+l+    +k ++++                      +k  + +ev+F+G+H+d+GGGy+
  KKY21487.1 227 LPGSKRKRRDEHQYDS-VAKTAVYVRHAVAIDERRCKFRPALLIPGATKADDDNiepqttggnrsttrttarepvPKKPPKTREVFFAGNHCDIGGGYP 324
                 9999887555444444.799***********************9888777666699*******************99999******************6 PP

     DUF2235 270 eneek........eelsdipLawmvre 288
                  ++ +         +lsdi+L+wm++e
  KKY21487.1 325 IKSVGenvdgeepMQLSDITLNWMLEE 351
                 6665599*****************986 PP

>> Kringle  Kringle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   6.1e-05      0.55       1      38 [.      40      77 ..      40      95 .. 0.91
   2 ?   -2.8   0.0      0.94   8.4e+03      41      52 ..     194     205 ..     181     207 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.1e-05
                SBSTTSTTC-S---BBTTS-BBE-TTSCSSSCHSSSTT CS
     Kringle  1 ClegnGesYrGtvsttesgaeCqaWdsetphkhkkyta 38
                C++g+G+sY Gt++ t+  +  q++d++t+++++ y++
  KKY21487.1 40 CFDGTGNSYSGTTADTNVVKIYQKFDKSTKDQFHYYQP 77
                9******************************9988876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.94
                 STTSTHTTTS-B CS
     Kringle  41 kkaakLeenyCR 52 
                 k+ +++++ +CR
  KKY21487.1 194 KDLHNFKSTFCR 205
                 444566778998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2883.26
//
Query:       KKY21488.1  [L=1235]
Description: putative serine threonine protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-59  200.9   0.0    3.6e-38  131.4   0.0    2.2  2  Pkinase        Protein kinase domain
    5.4e-27   94.7   0.0    2.8e-20   72.7   0.0    2.2  2  Pkinase_Tyr    Protein tyrosine kinase
    6.8e-14   52.0   0.0    1.3e-13   51.1   0.0    1.5  1  Response_reg   Response regulator receiver domain
    1.6e-07   31.0   0.0    1.5e-05   24.4   0.0    2.4  2  Kinase-like    Kinase-like
    1.4e-05   25.1   0.1     0.0018   18.2   0.3    2.4  2  APH            Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.01   14.8   0.1      0.018   14.0   0.1    1.3  1  Haspin_kinase  Haspin like kinase domain
      0.012   14.9   0.0      0.021   14.2   0.0    1.2  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
      0.095   11.7   0.2       0.15   11.0   0.2    1.2  1  Seadorna_VP7   Seadornavirus VP7
       0.13   11.8   0.0          4    7.0   0.0    2.3  2  FTA2           Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.4   0.0   1.8e-41   3.6e-38       3     147 ..      20     166 ..      18     192 .. 0.93
   2 !   67.3   0.0   6.6e-22   1.3e-18     153     263 ..     341     452 ..     333     453 .. 0.82

  Alignments for each domain:
  == domain 1  score: 131.4 bits;  conditional E-value: 1.8e-41
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                  ++ + +G+fG+Vy  ++k+tg+ +A+K++kk ++  k++ ++v +E +i+     ++++ +ly +f++k++lylv+ey++gg+ a+l++  g l+e+ 
  KKY21488.1  20 IVKPISKGAFGSVYLSKKKSTGDYYAIKVLKKADMIAKNQvTNVKAERAIMMWQGeSDFVAKLYWTFSSKEYLYLVMEYLNGGDCASLVKILGGLPEDW 118
                 5678999****************************999999********9987777*********************************99999***** PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEE CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlake 147
                 +kk++++i+ g+++lHs+gi+HrDlKp+N+Lid+kg+lK+tDFGl++ 
  KKY21488.1 119 CKKYVAEIVLGVQHLHSRGIVHRDLKPDNLLIDHKGHLKLTDFGLSRM 166
                 *********************************************986 PP

  == domain 2  score: 67.3 bits;  conditional E-value: 6.6e-22
                 SBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS..-HHHHHHHHHHT-SSG CS
     Pkinase 153 kltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei..seeakdllkkllkkdp 249
                 + ++fvgt++YlAPE +++ + ++ +D+WslG+il+e+l+g ppf++e+ ++ +e++l +           + ++p++ ++  seeakdl++kl++ dp
  KKY21488.1 341 THRKFVGTPDYLAPETINGFGQDEMSDWWSLGCILFEFLYGIPPFNAETPDQVFENILAR-----------RIDWPTDPDVqaSEEAKDLIDKLIRLDP 428
                 4689******************************************99988877777777...........556777766666**************** PP

                 CCSTT..........HHHHHTSGG CS
     Pkinase 250 kkRlt..........aeellqhpy 263
                 ++R++           +e+ +hp+
  KKY21488.1 429 RERIGanlnekypngGAEIQAHPW 452
                 ****95555555555555555555 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.0   1.4e-23   2.8e-20       3     153 ..      20     167 ..      18     184 .. 0.86
   2 !   19.8   0.0     2e-07    0.0004     169     250 ..     349     432 ..     338     436 .. 0.83

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 1.4e-23
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSS..HHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeat..eeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  + k + +GafG+V+  + k    ++    a+K+lk+  +  +++ +++  e +im+   + + + kl+   +++e l++v+ey++gGd  + ++    
   KKY21488.1  20 IVKPISKGAFGSVYLSKKK----STGDYYAIKVLKKADMiaKNQVTNVKAERAIMMWQgESDFVAKLYWTFSSKEYLYLVMEYLNGGDCASLVKIL-- 111
                  568899********99998....6677788888876443114557778888888877769999**************************9999887.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi 153
                    l  ++  ++++++  G+++L+s+ +vHrdl   N L++++ + k++DfGL+r  
   KKY21488.1 112 GGLPEDWCKKYVAEIVLGVQHLHSRGIVHRDLKPDNLLIDHKGHLKLTDFGLSRMG 167
                  99***************************************************964 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 2e-07
                  GGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH.HTTEE..S-BBTTSBHHHHHHHHHHT-SSGGGS- CS
  Pkinase_Tyr 169 vkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevlekl.kegkr..lekpekcpeelyelmkkcweedpeeRp 250
                    ++apE+++     + sD Ws G +l+E +  g  p++  ++ +v+e++  ++     +   +++ee ++l+ k  + dp+eR 
   KKY21488.1 349 PDYLAPETINGFGQDEMSDWWSLGCILFEFLY-GIPPFNAETPDQVFENIlARRIDwpTDPDVQASEEAKDLIDKLIRLDPRERI 432
                  5799*************************987.********99999999955544421333347889999999999999999995 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   6.6e-17   1.3e-13       1      82 [.     806     890 ..     806     915 .. 0.81

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 6.6e-17
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHH.HHHHESEEEEESSCSSSEHHHHHHHHHHCT...TTSEEEEEESSTS CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealell.keekvdlillDinmpgmdGlellkeireed...pelpviiltahse 82 
                   vli++D+p+ r+++++l+e+  + ++ +a++g+eal+l+  + ++d+i++  ++p+++G +++++ir++    +++p++ lt++ +
    KKY21488.1 806 VLICEDHPVSRMVMERLFEKLRC-RTITATSGAEALRLAvSQISFDIIIMEYKLPKLNGADITRMIRDTRnanEKTPIVCLTGYLK 890
                   8**********************.77788888899888746667**********************877767789*******7654 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.016        32      17      78 ..      21      81 ..      15      88 .. 0.84
   2 !   24.4   0.0   7.7e-09   1.5e-05     143     193 ..     117     165 ..     113     180 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.016
  Kinase-like 17 gellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeqelairllrgknpeqAk 78
                 ++++ kg ++ v++ k + tg++ a+kv    +  +k+++ ++k +  ai   +g++   Ak
   KKY21488.1 21 VKPISKGAFGSVYLSKKKSTGDYYAIKVLKKADMIAKNQVTNVKAER-AIMMWQGESDFVAK 81
                 6899**************************************99776.44455677766666 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 7.7e-09
  Kinase-like 143 tiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvr 193
                  + +++++ ++++  +++L+++g+vh ++++dnll d+kg l+l++f+ L r
   KKY21488.1 117 DWCKKYV-AEIVLGVQHLHSRGIVHRDLKPDNLLIDHKGHLKLTDFG-LSR 165
                  5688888.7888899*******************************6.455 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.018        36      34      84 ..      60     106 ..      21     120 .. 0.77
   2 !   18.2   0.3   9.3e-07    0.0018     159     200 ..     132     168 ..     115     170 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS CS
         APH  34 aeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr 84 
                    + +e a++ +  ++++ v+++++       +++l++++ey+ g + + 
  KKY21488.1  60 VTNVKAERAIMMWQGESDF-VAKLYW---TFSSKEYLYLVMEYLNGGDCAS 106
                 556789999****999999.99****...8999999********9988765 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 9.3e-07
                 H--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEE CS
         APH 159 llpgelptvllHgDlhpgNllvdpddgrvtGviDfedaglgp 200
                 +     +++++H+Dl+p+Nll+d ++g++  + Df+++++g 
  KKY21488.1 132 H---LHSRGIVHRDLKPDNLLID-HKGHL-KLTDFGLSRMGL 168
                 3...4589***************.77887.799999999985 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1     9e-06     0.018     230     257 ..     140     167 ..     134     186 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9e-06
  Haspin_kinase 230 HRdLhldniLvdknlnvtlidlklsRle 257
                    HRdL+ dn L+d++++  l d+ lsR+ 
     KKY21488.1 140 HRDLKPDNLLIDHKGHLKLTDFGLSRMG 167
                    **************************96 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.1e-05     0.021     103     171 ..     105     166 ..      92     177 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
         Kdo 103 qdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarl 171
                  +L+++l     l+e   ++ + ++   ++ lh++g+ H+dl + n+l++ ++    ++ l D+  +r 
  KKY21488.1 105 ASLVKILGG---LPEDWCKKYVAEIVLGVQHLHSRGIVHRDLKPDNLLIDHKG----HLKLTDFGLSRM 166
                 455555554...6677777888899999************************9....888999876665 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   7.7e-05      0.15     156     186 ..     130     160 ..     120     169 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.7e-05
  Seadorna_VP7 156 dfhsestnllhGDcnpenlmcDknGylklvD 186
                     h  s +++h D +p+nl+ D+ G lkl D
    KKY21488.1 130 VQHLHSRGIVHRDLKPDNLLIDHKGHLKLTD 160
                   45666999*********************99 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.062   1.2e+02      22      69 ..      16      64 ..       7      84 .. 0.71
   2 ?    7.0   0.0     0.002         4     175     204 ..     120     149 ..      97     164 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.062
        FTA2 22 kdiefleyLgkglhsiVl..kvkirgkeYALKlFrfleaeeleeaeedlk 69
                kd+++++ + kg+ + V+  k k  g  YA+K+ ++ ++   +++ ++ k
  KKY21488.1 16 KDFDIVKPISKGAFGSVYlsKKKSTGDYYAIKVLKKADM-IAKNQVTNVK 64
                588999999998888666226677788******999844.3334444444 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.002
        FTA2 175 vsqlpkllrdlkklhklgIvvrDlkeenyi 204
                  +++ +++  ++ lh+ gIv+rDlk++n++
  KKY21488.1 120 KKYVAEIVLGVQHLHSRGIVHRDLKPDNLL 149
                 57788999999****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.51
# Mc/sec: 7271.13
//
Query:       KKY21489.1  [L=525]
Description: putative agc protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   18.3   0.0     0.0047   16.9   0.0    1.7  1  PAS        PAS fold
     0.0081   16.4   0.0       0.02   15.2   0.0    1.7  1  PAS_9      PAS domain
  ------ inclusion threshold ------
      0.065   13.5   0.0       0.69   10.2   0.0    2.5  2  PAS_4      PAS fold
       0.21   12.0   2.6       0.23   11.9   0.3    2.3  2  Prok-TraM  Prokaryotic Transcriptional repressor TraM


Domain annotation for each model (and alignments):
>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0     1e-06    0.0047       3      81 ..      45     122 ..      43     144 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1e-06
                 HHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEEC CS
         PAS   3 lraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfkl 81 
                 l++  e++++ i+ +  dg+i +v++++++  G + e v gk + d+i  ++++ + e+++ l  + ++s+ ++ ++k+
  KKY21489.1  45 LKEAAEQTRNIILDLSLDGKIRWVSPSWTDVVGNTLEAVKGKAIADFIA-DSPDVFTEAIKALQTDDSKSQFVKFCVKV 122
                 66778899999999*******************************9996.65666777777777777777777777776 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.4e-06      0.02       7      59 ..      59     108 ..      53     168 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.4e-06
       PAS_9   7 dnpdgrilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrk 59 
                    dg+i ++++++ ++ G + e+v gk i d++   +++ + + +a++++++
  KKY21489.1  59 LSLDGKIRWVSPSWTDVVGNTLEAVKGKAIADFI---ADSPDVFTEAIKALQT 108
                 5589*999**************************...6666667666666664 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00015      0.69       8      50 ..      56      97 ..      49     140 .. 0.79
   2 ?   -0.3   0.0      0.28   1.3e+03      46      70 ..     412     436 ..     402     445 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00015
       PAS_4  8 lavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaa 50
                ++ l+ dg+++++++++ +++g + e++ Gk  a++  ++  +
  KKY21489.1 56 ILDLSLDGKIRWVSPSWTDVVGNTLEAVKGKAIADFIADS-PD 97
                555688****************************988764.33 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.28
       PAS_4  46 eedaarleralrrvlegeepiefle 70 
                 e++ a+++r  +r+++ge+  ++ +
  KKY21489.1 412 EDCIAEVMRKAERAAAGEQLSSSDD 436
                 5578999**********98776655 PP

>> Prok-TraM  Prokaryotic Transcriptional repressor TraM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1         1   4.6e+03      56      76 ..     254     274 ..     245     289 .. 0.52
   2 ?   11.9   0.3     5e-05      0.23      24      60 ..     377     413 ..     358     434 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1
                 HSCHHHHTTSCHHSHHHHHHH CS
   Prok-TraM  56 rasadekvseavleelqeeYv 76 
                 ra+ d ++++++l e++++ v
  KKY21489.1 254 RAEMDVQMAQETLTEHRHAIV 274
                 344444444444444443333 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 5e-05
                 S-HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHSCHH CS
   Prok-TraM  24 lskseleaLaisAIrehRrllaaaeavyeewvrasad 60 
                  + + l +  ++A+  hRr ++  e++++e++ a +d
  KKY21489.1 377 ADTERLSKAKVDAVLRHRRIIEYSERIRQEFTIAIED 413
                 4556777888********************9877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       952  (0.0530983); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3785.92
//
Query:       KKY21490.1  [L=430]
Description: putative c-3 sterol dehydrogenase c-4 decarboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-40  137.4   0.0    1.6e-36  125.8   0.0    2.1  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    8.2e-20   71.3   0.2    9.8e-19   67.8   0.2    2.0  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.9e-12   47.2   0.0    1.1e-06   28.3   0.0    3.1  3  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    4.7e-10   39.1   0.0    1.7e-07   30.7   0.0    2.2  2  NAD_binding_4    Male sterility protein
     0.0011   18.2   0.1       0.63    9.1   0.0    2.9  4  Polysacc_synt_2  Polysaccharide biosynthesis protein
  ------ inclusion threshold ------
      0.012   14.8   0.1        0.2   10.8   0.0    2.2  2  RmlD_sub_bind    RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00014       0.4       1      24 [.      13      36 ..      13      62 .. 0.76
   2 !  125.8   0.0   5.3e-40   1.6e-36      25     269 ..      85     336 ..      80     347 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00014
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrleelk 24
                +v+Gg+G lG++ v++L+++ + +
  KKY21490.1 13 LVVGGCGMLGSHFVEQLLNFPNEN 36
                69****************997743 PP

  == domain 2  score: 125.8 bits;  conditional E-value: 5.3e-40
   3Beta_HSD  25 evrvlDlrespelleelskvnvkkviegDvtdkdkleealegvd..vvihlaslvdvagkltedeimkvnvkGTrnvleacv.kag.....vrvlvYtS 115
                 ev+vlDlr  ++        + ++++e+D+t++d l +  ++v+  v++h+  +++v+    +  ++kvnv GTr++le +  ++g      +++vYtS
  KKY21490.1  85 EVHVLDLRCVKNR------YEGATYHEADITSADALLAIFQKVKpdVIFHT--ASPVFD-SPKPILYKVNVGGTRTLLEVAGgEHGdwggvCKAFVYTS 174
                 7778887776665......55667******************962256665..788998.67778**************885244344444599***** PP

   3Beta_HSD 116 saevvgpnslgeeilngdEeley.eslhqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdkllvpllkq...laklglalfkigdee 210
                 s +v+ +  ++ +++n+dE+ ++  ++ ++ y+e+K  a++lvl++N+      + ++Tc+LRpagi Ge+d + +  + q   +a + +  +++gd+e
  KKY21490.1 175 SSSVIHD--NQTDLVNADERYPViRPNLVEYYSETKGEADELVLQSNN----KFQGMLTCSLRPAGIIGERDVQYSYKVLQhaiAAPSWQLRMQLGDNE 267
                 *******..678999*****9852678*********************....44469***************998776655121334567789****** PP

   3Beta_HSD 211 vlsdrvYvgNvawahilAaralqdpkk...........kssvagqayfisddsPvesyddfnltllkelg 269
                 +l+d +Y+gN+a ah lAa  l+  +k           +++v g+a+ i++d+ v+ ++d    l+  lg
  KKY21490.1 268 NLFDLTYAGNIALAHFLAAERLLMTHKrvaeggipplsHEKVDGEAFMITNDNTVT-FWDATFFLWSLLG 336
                 *******************9999888889**************************9.***9999998887 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.2   3.3e-22   9.8e-19       1     228 [.      12     288 ..      12     296 .. 0.82

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 3.3e-22
                 EEEETTTSHHHHHHHHHHHHCT....SE.EEEEES-STTTTCHHCHHC...............................................EEEE CS
   Epimerase   1 ilVtGatGfiGsalvkallekg....ye.vigldrlssasntarledl...............................................elve 47 
                 +lV+G+ G++Gs++v++ll+      +    g++  +++s+      l                                               + +e
  KKY21490.1  12 VLVVGGCGMLGSHFVEQLLNFPnentQSaANGVSDSTQTSKL-----LrsrtgrstlphssefqypssksrypkyvntevhvldlrcvknryegaTYHE 105
                 79****************998733333324444444444444.....244456********************************************** PP

                 --TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHHHHHHHHTCT......EEEEEEEGGGGTSCSS..SSBSTCSTTS--.. CS
   Epimerase  48 ldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnlleaarkagvk......rllflsSsevYGkdae..qpkeettltgpl.. 136
                 +d+t ++al ++f++++pd+++h A    v +s +    +++ n+ gt++lle+a   + +       +++ sSs+v  ++++  +  +e     p+  
  KKY21490.1 106 ADITSADALLAIFQKVKPDVIFHTAS--PVFDSPKP--ILYKVNVGGTRTLLEVAGGEHGDwggvckAFVYTSSSSVIHDNQTdlVNADERY---PVir 197
                 ************************55..44444444..33489************9553323344459************999432355555...5554 PP

                 .--SSHHHHHHHHHHHHHHHHHHHH.T-EEEEEEESEEESTTS-TTS.TTSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHH CS
   Epimerase 137 .kpnspYaaaKlageklveayaaqy.glnaiilrlfnlyGprngege.vsrvipalirkilegkqevtllgdgtalRdflyveDvaeaillvleh 228
                  +  + Y+ +K  +++lv + ++++ g+ +++lr+  ++G+r  + +   +v+ ++i+     +     lgd ++l d+ y+  +a a+ l++e+
  KKY21490.1 198 pNLVEYYSETKGEADELVLQSNNKFqGMLTCSLRPAGIIGER--DVQySYKVLQHAIAAPSW-Q-LRMQLGDNENLFDLTYAGNIALAHFLAAER 288
                 4888*********************9****************..555488999988886554.4.57788*********************9987 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00062       1.8       1      24 [.      13      36 ..      13      64 .. 0.76
   2 !   28.3   0.0   3.6e-10   1.1e-06      53     232 ..     100     281 ..      78     300 .. 0.75
   3 !    7.6   0.0   0.00076       2.3     304     329 ..     382     407 ..     355     410 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00062
                   EEETTTSHHHHHHHHHHHHCT-CC CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyev 24
                   L+ G+ G  Gs+++e+Ll+   e 
     KKY21490.1 13 LVVGGCGMLGSHFVEQLLNFPNEN 36
                   89****************865554 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 3.6e-10
                    CEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHHHHHHHHTHHHHHHHHHHHHC.....T..TTSEEEEEEEGGGG-S-SS..SSB CS
  GDP_Man_Dehyd  53 nlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPeytaevnvlGtlrLLeairal.....glekkvrfyqaStsEvYGkvqe..vpq 141
                      + h++D+t +++l  ++++v+pd +++ A  s V  s +     ++vnv Gt +LLe++        g    + f+ +S+s v  + q   v  
     KKY21490.1 100 GATYHEADITSADALLAIFQKVKPDVIFHTA--SPVFDSPKP--ILYKVNVGGTRTLLEVAGGEhgdwgG--VCKAFVYTSSSSVIHDNQTdlVNA 189
                    4679*************************88..556555543..5689*************855343222..356677777777777777512446 PP

                    -TTS--.---..SHHHHHHHHHHHHHHHHHHH.H---EEEEEE-EEESTTS-TTSCCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHH CS
  GDP_Man_Dehyd 142 tEttpf.yPr..sPYaaaKlyadwivvnyrea.yglfavngilfnhesprrgetfvtrkitravarialgkqevlylGnldakRdwghvkDyvea 232
                    +E+ p+ +P+    Y+ +K  ad +v + +++ +g+ +++ +     + r   ++  + + +a+a    ++   ++lG+ ++  d +++  ++ a
     KKY21490.1 190 DERYPViRPNlvEYYSETKGEADELVLQSNNKfQGMLTCSLRPAGIIGER-DVQYSYKVLQHAIAAPSWQL--RMQLGDNENLFDLTYAGNIALA 281
                    88888536752267*********999988777367999999999999988.57778888888887666554..6778999999999999877655 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.00076
                    SB--B-THHHHHHH----SS-HHHHH CS
  GDP_Man_Dehyd 304 dlllgdaskakeeLgWkpkvsfeelv 329
                     +++ ++skak++Lg++p +++ee +
     KKY21490.1 382 MRRYFNCSKAKQRLGYRPLIGLEEAL 407
                    456789****************9965 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0016       4.8       2      19 ..      15      32 ..      14      44 .. 0.88
   2 !   30.7   0.0   5.6e-11   1.7e-07      89     209 ..     124     238 ..     110     272 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0016
                   E-TTSHHHHHHHHHHHHH CS
  NAD_binding_4  2 TGaTGFLGkvLlekLLrt 19
                    G+ G+LG++++e+LL+ 
     KKY21490.1 15 VGGCGMLGSHFVEQLLNF 32
                   69**************75 PP

  == domain 2  score: 30.7 bits;  conditional E-value: 5.6e-11
                    -EEEE--SS-S.STTSSEEHHHHHHHHHHHHHHHTSSS--......-EEEEEE.GGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHH CS
  NAD_binding_4  89 dviihsaAtvnfdepykellrvNveGtrevlelakklkkl.....kvllhvST.ayvngeregeveekvyeegekeekldederaklkglpntYeq 178
                    dvi+h a  v fd+p + l++vNv Gtr +le a + +       k++++ S+ +++++++++ v             +de  +    +l + Y+ 
     KKY21490.1 124 DVIFHTASPV-FDSPKPILYKVNVGGTRTLLEVAGGEHGDwggvcKAFVYTSSsSVIHDNQTDLV------------NADERYPVIRPNLVEYYSE 206
                    9****99888.9***********************55444555567*******777777777655............589999************* PP

                    HHHHHHHHHHHHHHH.H---EEEEEE-EEE-- CS
  NAD_binding_4 179 sKalaEklvrearrr.sglpvvivRpsiitge 209
                    +K +a++lv + +++ +g+ ++ +Rp  i+ge
     KKY21490.1 207 TKGEADELVLQSNNKfQGMLTCSLRPAGIIGE 238
                    *****888776664327788899999999885 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0029       8.6       1      21 [.      12      32 ..      12      45 .. 0.90
   2 !    9.1   0.0   0.00021      0.63      61     115 ..     106     156 ..      83     162 .. 0.86
   3 ?   -1.6   0.0      0.38   1.1e+03     171     219 ..     171     221 ..     165     225 .. 0.76
   4 ?   -3.5   0.0       1.4   4.3e+03     220     252 ..     339     371 ..     314     383 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0029
                     EEEETTTSHHHHHHHHHHHHH CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilkk 21
                     vlv G+ G +Gs++v+q+l++
       KKY21490.1 12 VLVVGGCGMLGSHFVEQLLNF 32
                     89****************997 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00021
                      --TT-HHHHHHHTT..T-SEEEE------HHHHHHSHHHHHHHHHHHHHHHHHHH CS
  Polysacc_synt_2  61 gdvrdkerlekaleelkvdvvfhaAAlKhVPlveenpleaiktNvlgtenvieaa 115
                      +d++ ++ l  +++++k+dv+fh+A     P+ ++      k Nv gt++++e+a
       KKY21490.1 106 ADITSADALLAIFQKVKPDVIFHTAS----PVFDSPKPILYKVNVGGTRTLLEVA 156
                      7999********************97....8999988888999999999988887 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.38
                      ETTGTTSSHHHHH.HHHHTTSSEEES-TT-EEEEE.-HHHHHHHHHHHHHH CS
  Polysacc_synt_2 171 VlgSrGSviplFk.kqikeggpvtvTdpemtRyfm.tieeavqLvlqalal 219
                      V +S+ Svi   + + +++++  +v  p+++ y+  t  ea +Lvlq+ ++
       KKY21490.1 171 VYTSSSSVIHDNQtDLVNADERYPVIRPNLVEYYSeTKGEADELVLQSNNK 221
                      677899999766515667779999999999988762556999999998776 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 1.4
                      --SS-EEEE--.-EEEHHHHHHHH......... CS
  Polysacc_synt_2 220 akggeifvldmGepvkivdlakalielsgleek 252
                       + +++  l+ G ++ +  la+a+ +++g e+k
       KKY21490.1 339 VEPSQVIALNEGFAMPLGMLAQAVTTMMGRESK 371
                      455667777778888888888888888886655 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.034     1e+02       2      22 ..      11      31 ..      10      60 .. 0.72
   2 ?   10.8   0.0   6.6e-05       0.2      30     141 ..     101     220 ..      83     254 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.034
                   EEEEESTTSHHHHHHHHHCTT CS
  RmlD_sub_bind  2 kilvtGanGqlGseLakqlae 22
                   ++lv+G+ G+lGs+ ++ql +
     KKY21490.1 11 RVLVVGGCGMLGSHFVEQLLN 31
                   79************9999864 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 6.6e-05
                    E-TTT--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHH.HCT......-EEEEEEEGGGS-S-TTS-B-TTS- CS
  RmlD_sub_bind  30 ltreeldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnaeavealAeaaa.avg......alLihvStDyVFdGekkrpYeedde 118
                     t +e+d+t a+a+ ++++++kpdv+ ++A         s +   y+vn+ ++++l e+a  ++g        +++ S+  V   ++++   + de
     KKY21490.1 101 ATYHEADITSADALLAIFQKVKPDVIFHTAS----PVFDSPKPILYKVNVGGTRTLLEVAGgEHGdwggvcKAFVYTSSSSVIHDNQTD-LVNADE 191
                    56679*********************99874....445677788888999998888887752233222222357777777666555333.333333 PP

                    ---......SSHHHHHHHHHHHHHHHH-S CS
  RmlD_sub_bind 119 tsP......lnvYGrtKlaGEqavlaagk 141
                      P      + +Y +tK +  + vl++++
     KKY21490.1 192 RYPvirpnlVEYYSETKGEADELVLQSNN 220
                    33311112256777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.35s 00:00:00.97 Elapsed: 00:00:00.52
# Mc/sec: 2466.94
//
Query:       KKY21491.1  [L=1181]
Description: putative rho-gtpase-activating protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-37  126.9   0.0    1.3e-36  125.7   0.0    1.6  1  RhoGAP      RhoGAP domain
    7.9e-30  102.9  29.9    6.2e-12   45.6   5.8    4.8  5  LIM         LIM domain
  ------ inclusion threshold ------
       0.07   12.7   5.0       0.25   11.0   0.0    3.3  3  zf_C2H2_13  Zinc finger domain


Domain annotation for each model (and alignments):
>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.7   0.0   2.3e-40   1.3e-36       1     148 [.     857    1007 ..     857    1010 .. 0.98

  Alignments for each domain:
  == domain 1  score: 125.7 bits;  conditional E-value: 2.3e-40
                  BHHHHHHHHHHHHHTTTSTTTTTS-S-HHHHHHHHHHHHHTGGGCTTTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHHHHTSSSHHHHHHHHH CS
      RhoGAP    1 PiivekcvefiekrgldtegiyRvsgskarvkelreafdkgkavdsdleeedvhavaslLKrfLrelpepLltkelyeelieaaksedeeerlealk 97  
                  P+i+e+ v+++++ ++  eg++R++g+ +r+k   ea+d+g+++  dl+ e++ +va+lLKrfLrelp+pLlt++l + +++ +k  de +r + l+
  KKY21491.1  857 PAIIEEAVHAMRQMDMSIEGVFRKNGNIKRLKDTAEAIDHGQTP--DLSRENPVQVAALLKRFLRELPDPLLTFKLQPLFLASQKLPDEGTRQRVLH 951 
                  99*****************************************9..8***********************************99************* PP

                  HHHTTS-HHHHHHHHHHHHHHHHHHHTHHH.....H---HHHHHHHHHHHHHT-TS CS
      RhoGAP   98 ellekLPkenrdtLryLlehLkrvaenske.....nkMtaknLaivfaPtLlrpks 148 
                   ++  LPk++rd +++L+++L +va+ s++      kM+a+nLa+v+aP+Ll +++
  KKY21491.1  952 LTCCLLPKAHRDSMEVLFRFLAWVASFSHVdeetgSKMDAHNLATVMAPNLLYSSA 1007
                  ****************************9999999*****************9865 PP

>> LIM  LIM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.4   9.1e-13   5.5e-09       1      57 [.      96     155 ..      96     156 .. 0.89
   2 !   45.6   5.8     1e-15   6.2e-12       1      57 [.     160     215 ..     160     216 .. 0.96
   3 !   11.7   0.8   3.8e-05      0.23       1      27 [.     220     248 ..     220     250 .. 0.84
   4 ?   -2.2   0.0      0.85   5.1e+03      41      52 ..     360     371 ..     353     373 .. 0.79
   5 !   25.1   1.1   2.6e-09   1.5e-05       1      53 [.     469     525 ..     469     529 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 9.1e-13
                 -TTT--BE-TTTEEEEETTEEEETTTSB-TTT-SB-CTT.CEEETTE......EEEHHHHHHH CS
         LIM   1 CagCnkkiadrelvlkaldkvwHeeCFtCsdCqkeLkegsfyekdgk......lyCkkdylkk 57 
                 C++C+++ + + +   al+ ++H +CF+C dC++  +++ f+ +d++      ++C++dy+++
  KKY21491.1  96 CKACGEPLEGQFVR--ALGGTFHLACFKCRDCGQIVASK-FFPVDDEsgtgqyPLCETDYFRR 155
                 ********955554..*******************9999.7888886689999*******986 PP

  == domain 2  score: 45.6 bits;  conditional E-value: 1e-15
                 -TTT--BE-TTTEEEEETTEEEETTTSB-TTT-SB-CTT..CEEETTEEEEHHHHHHH CS
         LIM   1 CagCnkkiadrelvlkaldkvwHeeCFtCsdCqkeLkegs.fyekdgklyCkkdylkk 57 
                 C++C+   + ++++  ald+++H+e+FtCs+C + +  ++ +ye+++k+yC+++y ++
  KKY21491.1 160 CYACGGALRGSYIT--ALDRKYHIEHFTCSVCPTVFGAQDsYYEHEDKVYCHYHYSTQ 215
                 *********99999..***************************************876 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 3.8e-05
                 -TTT--BE-TT..TEEEEETTEEEETTTS CS
         LIM   1 CagCnkkiadr..elvlkaldkvwHeeCF 27 
                 C+gC   i ++  e++++ ++++wH+eC+
  KKY21491.1 220 CNGCRTAILKQfvEIFRNGENQHWHPECY 248
                 ********976225678999********7 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.85
                 CEEETTEEEEHH CS
         LIM  41 fyekdgklyCkk 52 
                  y +++kl+Ckk
  KKY21491.1 360 AYGREAKLLCKK 371
                 688999****96 PP

  == domain 5  score: 25.1 bits;  conditional E-value: 2.6e-09
                 -TTT--BE-TTTEEEEETTEEEETT..TSB-TTT-SB-CTT.....CEEETTEEEEHHH CS
         LIM   1 CagCnkkiadrelvlkaldkvwHee..CFtCsdCqkeLkegs....fyekdgklyCkkd 53 
                 C +Cnk+i d++++  +  k+wH++  ++tC  C++ L+++        k gk++C +d
  KKY21491.1 469 CDSCNKPIDDECVI--IASKRWHIRppHLTCVACNRDLTNDLadarWDAKSGKVFCLND 525
                 9********99999..89*****6444***********998765323334447888776 PP

>> zf_C2H2_13  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.1e-05      0.25      15      28 ..      91     104 ..      82     108 .. 0.81
   2 ?   -2.1   0.0      0.51     3e+03      31      39 ..     342     350 ..     340     352 .. 0.82
   3 ?    1.5   0.9     0.037   2.2e+02      20      31 ..     469     480 ..     459     483 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.1e-05
  zf_C2H2_13  15 lnYRvCnkCGkPis 28 
                  + R+C++CG P+ 
  KKY21491.1  91 GQMRICKACGEPLE 104
                 688*********95 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.51
  zf_C2H2_13  31 aivdHLenh 39 
                 a +dHL n+
  KKY21491.1 342 AAIDHLANF 350
                 679***997 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.037
  zf_C2H2_13  20 CnkCGkPislea 31 
                 C++C kPi  e 
  KKY21491.1 469 CDSCNKPIDDEC 480
                 ********8665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.48
# Mc/sec: 7335.39
//
Query:       KKY21492.1  [L=319]
Description: putative alpha beta hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-10   41.6   0.0      3e-10   41.1   0.0    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    2.4e-10   40.5   0.0    4.6e-10   39.6   0.0    1.4  1  Abhydrolase_1  alpha/beta hydrolase fold
    3.6e-05   23.2   0.0    5.3e-05   22.6   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
     0.0038   17.4   0.0     0.0071   16.5   0.0    1.4  1  Thioesterase   Thioesterase domain
  ------ inclusion threshold ------
       0.04   13.5   0.0       0.47   10.1   0.0    2.2  2  Abhydrolase_8  Alpha/beta hydrolase
      0.057   13.1   0.0       0.09   12.5   0.0    1.2  1  PGAP1          PGAP1-like protein
      0.096   12.2   0.0       0.15   11.5   0.0    1.2  1  UPF0556        Uncharacterised protein family UPF0556


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   1.2e-13     3e-10       4     219 ..      45     307 ..      42     308 .. 0.51

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 1.2e-13
                    E--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHHCHHHHHHHCCTT.........TTSEEEEEETCHHHHHHHHHHCC...... CS
  Abhydrolase_6   4 lHGagssassWlvapLaallaagvhvlapDlpGhGrsdpppldledladlaalldelaa.......gggpvvlvGHSlGGalalaaapla....lv 88 
                    ++G+g +a s    +L+ ll++ v+v+ +D+ G+ rs++ p  +   ++ +  + el +       + +p +lvGHS+G ++a  +++l      v
     KKY21492.1  45 INGGGVPAISHM--RLQQLLSEFVRVYFYDRSGYDRSERGPEKV---LTAETSAKELMMlmrdgigVKPPYILVGHSYGSIIARTFLALYpsrdTV 135
                    778887666665..99******************6666555444...444232222222444444255555**********999944444688988 PP

                    EE.EEES-..----TTTS----TTHHHHHH.................TT-CCCCH..CCH.S-HSCCCCHHHCCCCHCHCCCGHH........... CS
  Abhydrolase_6  89 vg.vlldppptalpagllaaalelllalla.................llrllawl..sre.plprlfladedadaawrarlarla........... 152
                    vg vl d+   a+ + ++ ++ e+ + l +                  l++ +w   +++  ++++  +ded            +           
     KKY21492.1 136 VGmVLADS---ATEMMYGLFPGEVGRELKPivdgvdfekvfkykeasGLTDEEWEmvVEAtERTESAAEDEDN-----------Rgsarsllrfqq 217
                    89899999...55555533333333333331111111222222221122223444321112333344444442...........022222222222 PP

                    ........HHCCHHC.....HTTCCHHTT-TTGCEEE..CTT-C.........HHHHCHHCCCH.....STTEEETCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 153 ........allaglg.....llpaaawadlpvpllvl..ggeDp.........lvprllerlla.....qagarlpvvlpgaGHlphleepdevae 219
                            +             +a+ w+++ + +  +  g+eD+          ++ + ++l a     + + r+ v  p+ GH++ + +p+ +++
     KKY21492.1 218 fknqafgdRP----LsvvrcNMAADFWKQYDAGV-KVgnGTEDErvkarefieKLQSFDDELRAsqlrlSSRNRY-VHHPHVGHAFVITRPELLVD 307
                    2222211111....12222222477777777777.5535588887855555552222222333322345566666.********777779999987 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   1.8e-13   4.6e-10       2     106 ..      41     143 ..      40     158 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 1.8e-13
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHH.HHHCTTSSEE.EEEETHHHHHHHHHHHHH. CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldri.ldalgddklt.lvGhSmGGmialayaaey. 94 
                    vl+++ G++  + + ++  l++ L++   +v+ +D  G+++S+++p+   +  +  + a+ l ++ +d  g+++++ lvGhS+G+ ia++++a+y 
     KKY21492.1  41 VLIYINGGGVPAISHMR--LQQLLSE-FVRVYFYDRSGYDRSERGPE---KVLTAETSAKELMMLmRDGIGVKPPYiLVGHSYGSIIARTFLALYp 130
                    66666666553334457..7788887.89******************...5679999999999888*****************************5 PP

                    .GGGEEEEEEESE CS
  Abhydrolase_1  95 .perVkalvllga 106
                      + V ++vl ++
     KKY21492.1 131 sRDTVVGMVLADS 143
                    5555777777665 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.1e-08   5.3e-05      30     112 ..      64     146 ..      53     205 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.1e-08
  Hydrolase_4  30 qGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypd..kvaglilsaPalk 112
                  + + vy +D  G+ rse    +v   ++  + l  +++       + p +l+GhS G++ia ++l+ yp+   v g++l+ +a +
   KKY21492.1  64 EFVRVYFYDRSGYDRSERGPEKVLTAETSAKELMMLMRDGI--GVKPPYILVGHSYGSIIARTFLALYPSrdTVVGMVLADSATE 146
                  55689***********8777788888888888877765544..455599****************9999876777**99877765 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.8e-06    0.0071      13      80 ..      52     122 ..      41     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.8e-06
                   SGGGHHHHHHCTTCEEEEEEECSTTST...SHHHCTTCHHHHHHHHHHHHHHH-SSS.SEEEEEETHHHHHH CS
  Thioesterase  13 asvfrslasklsdpvvevlavqlpgre...rdepplesieelaaeyaealrqiqpeg.PyalfGhSlGgllA 80 
                   a +  +l++ ls+  v+v+++   g++   r+ + + ++e+ a e++  +r     + Py l+GhS+G+++A
    KKY21492.1  52 AISHMRLQQLLSE-FVRVYFYDRSGYDrseRGPEKVLTAETSAKELMMLMRDGIGVKpPYILVGHSYGSIIA 122
                   5566789999999.6999999999999777777888899*************999999*************9 PP

>> Abhydrolase_8  Alpha/beta hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00018      0.47      87     140 ..      89     141 ..      81     147 .. 0.71
   2 ?    0.9   0.0      0.12   3.1e+02      63     105 ..     235     278 ..     180     290 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00018
  Abhydrolase_8  87 AaagAaeLnallrdlratsvpgqhlallgHSYGSlvas..lAlddaaseVsdvvly 140
                    A+++A eL  l+rd  +      +  l+gHSYGS++a   lAl  +   V  +vl+
     KKY21492.1  89 AETSAKELMMLMRDGIGVK---PPYILVGHSYGSIIARtfLALYPSRDTVVGMVLA 141
                    6667777777777655555...567899*******986225665566667666666 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.12
  Abhydrolase_8  63 vAviAWlgYeaPagaskevatdd.rAaagAaeLnallrdlrats 105
                    +A+  W  Y+a ++++  + ++  +A++   +L+ ++ +lra +
     KKY21492.1 235 MAADFWKQYDAGVKVGNGTEDERvKAREFIEKLQSFDDELRASQ 278
                    45556999999988887776654378889999999999999875 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.5e-05      0.09      92     122 ..     109     139 ..      90     147 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.5e-05
       PGAP1  92 sviliGHSmGGivaraaltlknyikqsvnti 122
                   il+GHS+G i+ar+ l l   ++  v  +
  KKY21492.1 109 PYILVGHSYGSIIARTFLALYPSRDTVVGMV 139
                 569*************999877666655554 PP

>> UPF0556  Uncharacterised protein family UPF0556
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     6e-05      0.15      17      91 ..     143     221 ..     134     229 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6e-05
     UPF0556  17 kaktvefdvrPGGvvhsfseklk..eyectftya.sqGGtneqwqmsvglsdddrlfs.csvwrPqGksylfftqfkae 91 
                 +a+ + + + PG v + +   +   ++e +f y  + G t+e+w+m v+ ++  +  +     r   +s l f qfk +
  KKY21492.1 143 SATEMMYGLFPGEVGRELKPIVDgvDFEKVFKYKeASGLTDEEWEMVVEATERTESAAeDEDNRGSARSLLRFQQFKNQ 221
                 555566667777777777776666799******736777**********999766554156789999999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 1993.37
//
Query:       KKY21493.1  [L=372]
Description: putative pirin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-30  104.0   0.0    7.3e-30  103.1   0.0    1.4  1  Pirin     Pirin
    2.3e-28   98.6   0.0    1.2e-27   96.3   0.0    1.9  2  Pirin_C   Pirin C-terminal cupin domain
    4.7e-07   29.4   0.1    1.8e-05   24.4   0.7    2.3  2  Cupin_2   Cupin domain


Domain annotation for each model (and alignments):
>> Pirin  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.0   1.2e-33   7.3e-30       2     108 .]      91     189 ..      90     189 .. 0.94

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 1.2e-33
                 EEECCGTCC.TTCCEECTCEECCEEESS.S.ETTEEEET-EEEEEEEBSEEEEEEEECSEEEEEETTS-EEEEETT-EEEEE-TT-EEEEEEE-SS..S CS
       Pirin   2 vrvrralgkaaelqsvdpFlfldefdpaelevgeedvigagfpphphrgletvtylleGevehrDslGnkgvirpGdvqwmtAgsGivhsEmneee..e 98 
                 +rvrr++g+ ++l++++pFl+ld+f+     +g     gagfp+hphrg et+tyll+G v+h+D +Gnkg+i pGd+q mtAg+Gi+h+Em++++  +
  KKY21493.1  91 ARVRRSIGT-PKLRNFSPFLMLDHFT-----IGP----GAGFPDHPHRGQETITYLLSGGVDHEDFAGNKGTIGPGDLQFMTAGRGIMHAEMPRQNpdG 179
                 689999999.9**************9.....455....67******************************************************99878 PP

                 S-EEEEEEEE CS
       Pirin  99 esleglqlWv 108
                 +   glqlWv
  KKY21493.1 180 SANVGLQLWV 189
                 8889*****8 PP

>> Pirin_C  Pirin C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.26   1.6e+03       4      51 ..     114     164 ..     112     172 .. 0.71
   2 !   96.3   0.0     2e-31   1.2e-27       2     103 ..     246     354 ..     245     355 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.26
                 EEE-TT-EEEEE--TT-EEEEEEEES-E...EESSTTEEE-TTEEEEE-SS CS
     Pirin_C   4 ltleagaelelplpegleaavyvleGel...evggerseieeeqlavlgdg 51 
                 +t+ +ga +      g e++ y l+G +    + g++ +i +++l  +++g
  KKY21493.1 114 FTIGPGAGFPDHPHRGQETITYLLSGGVdheDFAGNKGTIGPGDLQFMTAG 164
                 667777777766688999999*****9955555666677777666666655 PP

  == domain 2  score: 96.3 bits;  conditional E-value: 2e-31
                 EEEEE-TT-EEEEE--TT-EEEEEEEES-EEESSTT...EEE-TTEEEEE-.SSSEEEEE--S...S-EEEEEEEE----S--EEETTEEESSHHHHHH CS
     Pirin_C   2 ldltleagaelelplpegleaavyvleGelevgger...seieeeqlavlg.dgdslvvkaee...kgarvlLlaGePlgepvvqyGpfVmntkeeieq 93 
                 ld+t+++ga+l++++p++++a++y+l+G+ ++g+     ++i++ + +v++ +gd ++ ++ee   +++r+l++aG+Pl+++vvqyGpfVmn++ee+ q
  KKY21493.1 246 LDVTMKPGARLAQEIPKSWNAFIYTLTGTTNFGNGPkdtQTITPYHNVVFEqPGDIITAETEEgatEDSRFLIIAGQPLDQKVVQYGPFVMNSQEEVYQ 344
                 8*******************************98777889***********999999999998989999****************************** PP

                 HHHHHHTT-T CS
     Pirin_C  94 afedyregrf 103
                 af d+++  +
  KKY21493.1 345 AFVDFQTASN 354
                 ******9866 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.7     3e-09   1.8e-05       2      52 ..     113     164 ..     112     170 .. 0.94
   2 ?    2.0   0.0     0.029   1.7e+02       3      31 ..     248     276 ..     246     289 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 3e-09
                 EEEEETTEEEEEECSSSEEEEEEEEESEEEEE.ECTEEEEEETTEEEEE-TT CS
     Cupin_2   2 lvelppGesapshrHpgedeffyVleGegelt.vdgeeveleaGdsvyfpag 52 
                 ++++ pG+ +p h H+g++ + y l+G +  +   g++ ++++Gd+ +  ag
  KKY21493.1 113 HFTIGPGAGFPDHPHRGQETITYLLSGGVDHEdFAGNKGTIGPGDLQFMTAG 164
                 5799******************************************999988 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.029
                 EEEETTE.EEEEECSSSEEEEEEEEESEEE CS
     Cupin_2   3 velppGe.sapshrHpgedeffyVleGege 31 
                 v+++pG+  a++   +++ +f+y l G+  
  KKY21493.1 248 VTMKPGArLAQEIPKSWN-AFIYTLTGTTN 276
                 7999***66666669999.********965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2669.50
//
Query:       KKY21494.1  [L=266]
Description: putative hd domain containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-48  163.2   0.1    5.9e-48  162.9   0.1    1.1  1  HD_3      HD domain
    2.3e-09   37.3   0.0    3.5e-09   36.7   0.0    1.3  1  HD_2      HD containing hydrolase-like enzyme


Domain annotation for each model (and alignments):
>> HD_3  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.9   0.1   6.5e-52   5.9e-48       1     157 [.      58     217 ..      58     225 .. 0.93

  Alignments for each domain:
  == domain 1  score: 162.9 bits;  conditional E-value: 6.5e-52
        HD_3   1 vekLKfqkRqgwlqtgrvreesvaeHmwrvalmalllseelkekvdiarvikmfLiHDlvEiltgDiispdelakeekeeeekeaaerilkllpee... 96 
                 +e+LK+ kR+gw+++g+ r es+a+Hm+r+++m+++++++l +k+++a + km+L+HD++E+l+gD++++d++ k ek+++e+e++++i++ l ++   
  KKY21494.1  58 IERLKTEKREGWRRFGIGRGESIADHMYRMSIMTMMAPPSLTSKINQANCQKMALVHDMAESLVGDLTPVDGVPKPEKSRREAETMDYICNDLLGNvhg 156
                 69******************************************************************************************9999666 PP

        HD_3  97 ..laeellalweEFeeretkeakfakdlDklepllqalekegdslaafeaklsqvygvsskel 157
                    +++l+a w+E+e+++t +++f++d+Dk+e+llq+le+e+  +a+   +ls++  v+++  
  KKY21494.1 157 glAGKDLRAAWQEYEDSKTLDSHFVHDVDKIELLLQMLEYEKAFNAEK--DLSEFSWVAERVA 217
                 6666**************************************999966..9999988876665 PP

>> HD_2  HD containing hydrolase-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0     4e-13   3.5e-09       2     151 ..      54     203 ..      53     231 .. 0.74

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 4e-13
        HD_2   2 FfallsrlkyieR..walmrntreenvaeHslevaliahalalienkkfggkldaerlallalyHDasEiitGDlptpvKyanpeireaykevEee..a 96 
                 Ff+l++rlk+ +R  w      r e++a+H +++++++++        + +k++  ++ ++al+HD++E ++GDl tpv    p+ +++ +e E++   
  KKY21494.1  54 FFHLIERLKTEKRegWRRFGIGRGESIADHMYRMSIMTMMA----PPSLTSKINQANCQKMALVHDMAESLVGDL-TPVDG-VPKPEKSRREAETMdyI 146
                 9************4455555689***********9887554....44556799*********************9.89975.45556666666666556 PP

        HD_2  97 eekllelLpeelr.eeyeella.deeaeeeekklvkaaDklsalikcleelkagnke 151
                  + ll  +   l  ++ +  ++  e+ ++   ++v+  Dk++ l+++le +ka n e
  KKY21494.1 147 CNDLLGNVHGGLAgKDLRAAWQeYEDSKTLDSHFVHDVDKIELLLQMLEYEKAFNAE 203
                 777777777666425667777434455556899******************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 1688.38
//
Query:       KKY21495.1  [L=851]
Description: hypothetical protein UCRPC4_g03599 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-39  134.5   1.1    4.3e-39  134.5   1.1    1.6  2  HAUS6_N   HAUS augmin-like complex subunit 6 N-terminus


Domain annotation for each model (and alignments):
>> HAUS6_N  HAUS augmin-like complex subunit 6 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.5   1.1   2.4e-43   4.3e-39       1     219 [.      39     259 ..      39     270 .. 0.86
   2 ?   -2.6   0.1      0.19   3.4e+03     146     192 ..     312     340 ..     291     424 .. 0.59

  Alignments for each domain:
  == domain 1  score: 134.5 bits;  conditional E-value: 2.4e-43
     HAUS6_N   1 lltnLllLgldplpd.pdksritfsedmfdk..pnk.kafeivlyfLFnklDpeeakkkFrpcwPplDkkqeaeFRkalvewLkeikeegklgrlpkvv 95 
                 +l+ ++lL+ld+l+d p +s +tfs  ++ +  ++k k  e++ly+LF+++Dp+e+ +k++p++Ppl   q+ ++R+al+++L+++k  g lgr ++++
  KKY21495.1  39 FLRVIRLLNLDKLEDwPGISEATFSGRAVSQnlQQKlKGTEWALYRLFELWDPQETGDKLKPFFPPLAPLQSKNLRAALFRCLSDVKRDGFLGREAVLR 137
                 67889*********************65544488889************************************************************** PP

     HAUS6_N  96 stlllspgGekfielLlsfssfVlkkvlkeksk........klalevreaaskkaqdlsklvaahrvslrrflrekaaadrarqkyqenaqllekkere 186
                 +t+l++++Gekf+e+L sf+ +Vl+kv+ ++++        +la  ++  +s+k+  l ++++a+   +rr+l+e+++     ++  e+++ l++ +  
  KKY21495.1 138 KTMLDECKGEKFEEVLSSFAMAVLRKVTLQSHSghdrmmniALAPANKLPLSRKD-LLLPMMIAQTYGIRRTLQEMSDI---HEDHIEQQKGLSDTQAT 232
                 ****************************999999*****9988888888888888.999999****************8...67777888888888888 PP

     HAUS6_N 187 lraeleelqaelkaekeaakkekkeasedaeee 219
                 + a+l++l+++ +      ++ ++ +se+ae+e
  KKY21495.1 233 ILASLKDLHQQKE------AIFRMSESEQAEAE 259
                 8888888888555......33333334444333 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.19
     HAUS6_N 146 sklvaahrvslrrflrekaaadrarqkyqenaqllekkerelraele 192
                 + l+ +++ +++r+                  ++ ++ +r++++ele
  KKY21495.1 312 EDLESRIASHRSRL------------------RSWRNFQRSIAQELE 340
                 33333333333332..................222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (851 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.51
# Mc/sec: 5019.24
//
Query:       KKY21496.1  [L=314]
Description: putative bar domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-65  219.4   0.4    7.4e-65  218.9   0.4    1.2  1  BAR_2     Bin/amphiphysin/Rvs domain for vesicular traffickin
    1.8e-21   76.9   6.5    7.5e-20   71.6   6.5    2.0  1  BAR       BAR domain
  ------ inclusion threshold ------
       0.03   14.0   0.4       0.81    9.3   0.0    2.4  2  BAR_3     BAR domain of APPL family
      0.087   13.0   0.0       0.84    9.8   0.0    2.3  2  P22_AR_C  P22AR C-terminal domain


Domain annotation for each model (and alignments):
>> BAR_2  Bin/amphiphysin/Rvs domain for vesicular trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.9   0.4   1.6e-68   7.4e-65       3     283 ..      16     292 ..      14     298 .. 0.93

  Alignments for each domain:
  == domain 1  score: 218.9 bits;  conditional E-value: 1.6e-68
       BAR_2   3 lsikkkttrllqeklgqvkdiskLPkqYleLEkkvDslekvykrlllvtktyevegYDYPpnltesisdwwksigaklkelknvssleedeivllgkkk 101
                 ++++++t+++++e+lgq+++  +LP++Y eLE++vD+l++v ++ll+vt+ y +e+YDYPpn++es++d++++i++k++ l+++s ++e++ +l +  +
  KKY21496.1  16 TPFAARTQQYVKEQLGQAEEKTQLPNDYIELERRVDALKQVHQKLLQVTSQYSNEAYDYPPNIRESFNDLGRTISEKVTLLSHASTPTEAQAALTAPPS 114
                 79******************************************************************************************8854443 PP

       BAR_2 102 kekskeekesqatsallprtlaqalskaakdsslilqeleekdedlepLikvleqvssaykeiaeakleqDslivkefnkkLeellnqefkkvhelrkk 200
                 ++              +p+t+++a+++a+ + s+ l+e + +  +++pL+ +le+++ a++++ ea+l qD  i++ f +  +++ln+++  +++ rk 
  KKY21496.1 115 AK------P-------QPKTFNHAIARASLNGSQLLNETNPSGGAEDPLATALEKYALAEEKVGEARLAQDAQIQSRFLAGWSTTLNTNLMFAQKARKA 200
                 33......3.......6**********************99999******************************************************* PP

       BAR_2 201 VeesRlkfdtlrseveek.........ekpeteeedkklleklEDefvsateeAvvvmkeildssklisllklfqkaqleYfekcvkkleel 283
                 Ve+sRl +d ++   +++         ++ +  ++d++++e++EDefvs teeAv vmk++ld  + + +l  +++aqleY++k+ + l el
  KKY21496.1 201 VENSRLMLDSVKATKKNNatgrgmnpdDEYSLSDHDRAEIEAAEDEFVSQTEEAVGVMKNVLDTPEPLRNLADLIAAQLEYHKKAYEILSEL 292
                 *************9999877777655544455559*************************************************99988776 PP

>> BAR  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   6.5   1.7e-23   7.5e-20       6     235 ..      20     294 ..      15     297 .. 0.81

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 1.7e-23
         BAR   6 nRasqlleekvgkaekTk.LDedFeelerrldvteklieklvkelkeylqanpga...rakqivlekl..............................k 70 
                 +R++q+++e +g+ae+++ L  d+ elerr+d ++++ +kl++ +++y+     +     +++  ++l                              k
  KKY21496.1  20 ARTQQYVKEQLGQAEEKTqLPNDYIELERRVDALKQVHQKLLQVTSQYSNEAYDYppnIRESF--NDLgrtisekvtllshastpteaqaaltappsaK 116
                 69**********9976555*****************************994433211022222..3336666666666666666666666666666663 PP

         BAR  71 eqplelLaesmieagkelgedssfg..................................kalekygeavkklaqteeelekrvetnfldplrellekef 135
                                                                             aleky+ a++k++++    +++++++fl    + l++ +
  KKY21496.1 117 ------------------------PqpktfnhaiaraslngsqllnetnpsggaedplaTALEKYALAEEKVGEARLAQDAQIQSRFLAGWSTTLNTNL 191
                 ........................04444444444444444444444444458888888**************************************** PP

         BAR 136 keiqkerkklehkrlDyDaakarlkklktkkskkakde....ekaeeelrkAqqkfeesneelkaeLpnllalevefvnqlqafveaqldfhkqaaqll 230
                    qk+rk  e+ rl +D+ ka+ k   t    + +de    ++ ++e++ A+++f  + ee+   ++n+l++  e +++l +++ aql++hk+a+++l
  KKY21496.1 192 MFAQKARKAVENSRLMLDSVKATKKNNATGRGMNPDDEyslsDHDRAEIEAAEDEFVSQTEEAVGVMKNVLDT-PEPLRNLADLIAAQLEYHKKAYEIL 289
                 **************************999999998999***999999***********************665.4556********************* PP

         BAR 231 eqlqq 235
                 ++l +
  KKY21496.1 290 SELAP 294
                 *9976 PP

>> BAR_3  BAR domain of APPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.018        81      45      87 ..       8      64 ..       1      88 [. 0.53
   2 ?    9.3   0.0   0.00018      0.81     183     220 ..     265     302 ..     173     313 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.018
       BAR_3 45 gkaysaaqkqfaqsLrelkkes..kgdeetd............esLkkfsellqele 87
                gk++s+ +  fa + +++ ke+  + +e+t+            ++Lk++++ l ++ 
  KKY21496.1  8 GKNISSSFTPFAARTQQYVKEQlgQAEEKTQlpndyielerrvDALKQVHQKLLQVT 64
                556666666666666666666633333333355333333333333333333333332 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00018
       BAR_3 183 feiletllsfmqaqltFfhqGyelfkdlepfmkeLsaq 220
                  e l +l  ++ aql + ++ ye++++l p+   L+  
  KKY21496.1 265 PEPLRNLADLIAAQLEYHKKAYEILSELAPVVDGLQVD 302
                 5778999***********************99988754 PP

>> P22_AR_C  P22AR C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00019      0.84      10      50 ..      34      74 ..      26      92 .. 0.86
   2 ?    0.0   0.0      0.22   9.7e+02      20      40 ..     280     300 ..     271     310 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00019
    P22_AR_C 10 kElqsLvWlWfalvrsvellrelepaLraigsnlapkaYsi 50
                +E  +L  ++++l r v  l+++   L ++ s+++ +aY++
  KKY21496.1 34 EEKTQLPNDYIELERRVDALKQVHQKLLQVTSQYSNEAYDY 74
                5678899999*****************************98 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.22
    P22_AR_C  20 falvrsvellrelepaLraig 40 
                  ++++  e+l+el p+ + ++
  KKY21496.1 280 EYHKKAYEILSELAPVVDGLQ 300
                 345555666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       937  (0.0522617); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 1937.36
//
Query:       KKY21497.1  [L=505]
Description: putative bar domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.50
# Mc/sec: 3041.45
//
Query:       KKY21498.1  [L=1180]
Description: hypothetical protein UCRPC4_g03602 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-64  217.7   0.0    3.3e-64  216.8   0.0    1.5  1  Pkinase         Protein kinase domain
    7.5e-30  104.1   0.0    1.5e-29  103.1   0.0    1.4  1  Pkinase_Tyr     Protein tyrosine kinase
    4.5e-06   26.9   0.0    1.2e-05   25.5   0.0    1.7  1  Yop-YscD_cpl    Inner membrane component of T3SS, cytoplasmic
    0.00037   19.9   0.0      0.002   17.5   0.0    1.9  1  Kinase-like     Kinase-like
  ------ inclusion threshold ------
       0.02   14.5   0.1      0.086   12.5   0.0    1.9  2  FTA2            Kinetochore Sim4 complex subunit FTA2
      0.027   13.9   0.0      0.045   13.1   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
      0.082   11.7   0.0       0.15   10.8   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase
       0.16   11.8   0.1       0.81    9.6   0.1    1.9  2  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.8   0.0   1.5e-67   3.3e-64       1     264 []     343     626 ..     343     626 .. 0.93

  Alignments for each domain:
  == domain 1  score: 216.8 bits;  conditional E-value: 1.5e-67
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--H CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke..kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslse 97 
                 y+++ +lG+G+f++Vyk+  k++g+ +A K+++k++  k+     kv +E+ki+  l+hpniv++ ++f  ++++y+++e+v+ggel  +l+r+g+++e
  KKY21498.1 343 YNVVGNLGKGAFAVVYKIATKRDGRVYAAKEVDKRRFMKNGVldLKVENEMKIMSLLRHPNIVQYEDYFDYSHWIYIIMEFVPGGELSAYLSRRGAIPE 441
                 678899*****************************99888767789***************************************************** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE..EEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH.....................TTS CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLidekge..lKitDFGlakelesssk.ltsfvgtseYlAPEvl.....................ken 172
                    ++i++qil++l+ylH++gi HrD+Kp+NiLi++ +   +K++DFGl+k ++ +++ l++f+gt  Y+APEv                      k++
  KKY21498.1 442 PVGQDITRQILHALDYLHKRGITHRDIKPDNILISNYQPltVKLSDFGLSKCIQDQETfLKTFCGTLLYCAPEVYpdyanyrtnlpvkrrrgdgrsKTS 540
                 ***********************************433367**************9999******************9999999999998888776679 PP

                 CBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 173 eyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 +ys++vD+Ws G +ly +l++kpp    +g+++ + +l++      i++ +++ +  +  +ise a+++++ ll++dp  R+t +++ qh+++
  KKY21498.1 541 PYSQAVDIWSFGAVLYHILCNKPPIM-VRGDDRGAVMLNN------IMThDVDYTPLRLLNISERAISFISGLLNRDPAMRPTEAMCFQHEWI 626
                 **************************.6677766666666......5544778888889999******************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.0   6.6e-33   1.5e-29       6     202 ..     348     561 ..     344     622 .. 0.83

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 6.6e-33
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHH..HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtl.keeateee..keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                  +lG+Gaf+ V++   k    ++    a K + k++ +++     ++ +e+kim+ l+hpniv++      ++ ++i++e+v+gG+L+ +L ++   ++
   KKY21498.1 348 NLGKGAFAVVYKIATK----RDGRVYAAKEVdKRRFMKNGvlDLKVENEMKIMSLLRHPNIVQYEDYFDYSHWIYIIMEFVPGGELSAYLSRR--GAI 439
                  79**********9999....4555567777734444444444677889********************************************8..999 PP

                  BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE..TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE............... CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse..nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk............... 181
                        +++ q+ ++++yL+++ + Hrd+   N+L+s+    +vk+sDfGL++ i+++++    ++    + ++apE+  +                 
   KKY21498.1 440 PEPVGQDITRQILHALDYLHKRGITHRDIKPDNILISNyqPLTVKLSDFGLSKCIQDQETF--LKTFCGTLLYCAPEVYPDYAnyrtnlpvkrrrgdg 535
                  999999*******************************84456*************444444..445566789*******99988999*********** PP

                  ......EEHHHHHHHHHHHHHHHHTTS CS
  Pkinase_Tyr 182 ......ftsksDvWsfGvllwEiftlg 202
                        ++++ D+WsfG +l+ i++  
   KKY21498.1 536 rsktspYSQAVDIWSFGAVLYHILC-N 561
                  **********************998.3 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   5.4e-09   1.2e-05      17      66 ..     199     252 ..     189     275 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 5.4e-09
                   EEEEEES-TT.-SEE---...TTS-TT-EEEEEETTEEEEEE-CESS--EETTE CS
  Yop-YscD_cpl  17 gevviGsded.cDivLsD...kevsrkhlkLeveeesvrledlgsrngllvnge 66 
                     +++G+++d cDivL D   k++s+ h+ ++++e+++ + + +s+ng++v+g 
    KKY21498.1 199 MGFTFGRNRDrCDIVLADeseKNISNIHFGISLNENGILMLEDRSTNGTAVDGD 252
                   55789****99*******77778****************************986 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     9e-07     0.002     149     251 ..     447     566 ..     435     614 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 9e-07
  Kinase-like 149 lTlqlirlaanLqakglvhgkftvdnllldekgg..lmlggftaLvragtkvvl.seve..kgfaPpEllgsrggyt............rknktkmth 229
                  +T q++    +L+++g+ h ++++dn+l  ++ +  ++l +f+      ++     + +    +  pE+    + y+            r ++  ++ 
   KKY21498.1 447 ITRQILHALDYLHKRGITHRDIKPDNILISNYQPltVKLSDFGLSKCIQDQETFlKTFCgtLLYCAPEVYPDYANYRtnlpvkrrrgdgRSKTSPYSQ 544
                  788999999********************9987722577888644333333333277775522455666554444431111111111115678899** PP

  Kinase-like 230 kldaWqlGlviyriwclklPlt 251
                  ++d W  G+v y i c k P+ 
   KKY21498.1 545 AVDIWSFGAVLYHILCNKPPIM 566
                  ****************999975 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.54   1.2e+03      23      51 ..     342     372 ..     334     416 .. 0.70
   2 ?   12.5   0.0   3.8e-05     0.086     170     204 ..     440     474 ..     416     489 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.54
        FTA2  23 diefleyLgkglhsiVlkvkir..gkeYALK 51 
                 +++ +  Lgkg+ ++V+k+  +  g++YA K
  KKY21498.1 342 NYNVVGNLGKGAFAVVYKIATKrdGRVYAAK 372
                 567788899*********9765116799988 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.8e-05
        FTA2 170 qeelevsqlpkllrdlkklhklgIvvrDlkeenyi 204
                 +e++ +++++++l+ l+ lhk gI +rD+k++n++
  KKY21498.1 440 PEPVGQDITRQILHALDYLHKRGITHRDIKPDNIL 474
                 67788899************************986 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     2e-05     0.045     104     166 ..     428     488 ..     416     498 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2e-05
         Kdo 104 dLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                 +L ++l +   ++e + + + +++  +   lh++g+ H+d+ + nil+ + +   +++ l D+
  KKY21498.1 428 ELSAYLSRRGAIPEPVGQDITRQILHALDYLHKRGITHRDIKPDNILISNYQ--PLTVKLSDF 488
                 5778888766689999999*****************************9887..666666665 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.5e-05      0.15     316     380 ..     452     510 ..     447     523 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.5e-05
  Pkinase_fungal 316 IkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleF 380
                     + ++  L+ k gi HrDi  +Nili    + +  +  L+D+ l k ++d  +e   ++  GTl +
      KKY21498.1 452 LHALDYLH-KRGITHRDIKPDNILIS---NYQPLTVKLSDFGLSKCIQD--QETFLKTFCGTLLY 510
                     67888999.****************9...34556777888888888775..33333556666655 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.48   1.1e+03      33      84 ..     385     431 ..     349     444 .. 0.68
   2 ?    9.6   0.1   0.00036      0.81     148     181 ..     447     476 ..     428     483 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.48
                 -HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS CS
         APH  33 aaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr 84 
                 ++ ++++e +++ lL+  ++     + ++   + + + + ++e+vpg  l+ 
  KKY21498.1 385 LDLKVENEMKIMSLLRHPNI-----VQYEDYFDYSHWIYIIMEFVPGGELSA 431
                 66677777777777665544.....555555666777899999999999987 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00036
                 HHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC CS
         APH 148 leeqvlaalaallpgelptvllHgDlhpgNllvd 181
                 +++q+l + ++ l+   +++++H+D++p+N+l+ 
  KKY21498.1 447 ITRQIL-HALDYLH---KRGITHRDIKPDNILIS 476
                 555433.3334445...69*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.49
# Mc/sec: 7178.24
//
Query:       KKY21499.1  [L=218]
Description: putative fas1 domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.061   13.5   0.0       0.11   12.8   0.0    1.4  1  Fasciclin  Fasciclin domain


Domain annotation for each model (and alignments):
>> Fasciclin  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.9e-06      0.11      14     117 ..      92     205 ..      79     214 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.9e-06
                 TCCCCCTCSSSSEEEEEE-HHHHCCC......HHHHHHHHHT.......CHHHHHHHHHTTEEESSS-HHHHHHHHEEEECCTTSSEEEEEEEGGTTEE CS
   Fasciclin  14 glaeeLnkkdgglTvFaPtneAfakl......ppellaklln.......dkkklkeiLkyHvvpetvsssalkkasetlatllegaklrvniekgngtv 99 
                  + + L+++  + T+++P n+A++ l      +p+  ++l +       +++ + + L+ +v +  v+ s ++++ e+++t + g+ ++ +++ ++g+v
  KKY21499.1  92 TVSSRLDDQSLNSTILCPLNSALQSLprkpweDPKDYDSLGSnayagdqGEDRAHRNLRRFVESYVVTDSPWREG-EKVKT-MGGQVVWWERR-DGGKV 187
                 4567786666699**********9997776664444444444677788888889999999988888899999999.99999.99999999999.45556 PP

                 EETTEEEEEEEEEEESSE CS
   Fasciclin 100 tvngkarvvrsdieatng 117
                 ++ g+  v   + +  ng
  KKY21499.1 188 VMPGEIAVEGVQEKVGNG 205
                 555545555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1474.45
//
Query:       KKY21500.1  [L=264]
Description: hypothetical protein UCRPC4_g03604 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-54  181.7   1.6    1.2e-53  181.3   1.6    1.1  1  EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like


Domain annotation for each model (and alignments):
>> EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.3   1.6   6.7e-58   1.2e-53       2     170 .]      10     204 ..       9     204 .. 0.98

  Alignments for each domain:
  == domain 1  score: 181.3 bits;  conditional E-value: 6.7e-58
  EMC3_TMCO1   2 lvldplirdwvllPivivillvgiltgllsellqkllidkkkmekeqkrekelqkrarelqkngd.klklkklekrqeelmedqsem............ 87 
                 +  dp++ +w+l+Pi+iv++l+g+l+++++ l+++ +  k   +  + re++ + r  + ++n +  l + ++e+r+++l+ + +e+            
  KKY21500.1  10 IYRDPALFYWILFPITIVMILTGVLRHYATILMNSPP--KPASTPLESRERQSLIRGVNFRNNASlALTPSSFEARKNYLISAFKEGeflkdkdlkgqp 106
                 6789*******************************99..8889999****************999899******************************* PP

  EMC3_TMCO1  88 .............mmdqmkpmivtmipqiliffwlnsffsgfvvaklpfpltgrfksllqrgl..esldvrfvssiswYflcsfglsqiirklLgean 170
                              mm +mk+++++mipq+li++w+n+ff+gfv++klpfplt+rfks++q+g+   +ldvr+vss+swYfl++fgls+++  +Lg++n
  KKY21500.1 107 panpmsdpaamegMMGMMKGNMAMMIPQTLIMSWINAFFAGFVLLKLPFPLTIRFKSMMQSGVmtRDLDVRWVSSLSWYFLNLFGLSSVFIFILGNDN 204
                 **********************************************************************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.52
# Mc/sec: 1524.85
//
Query:       KKY21501.1  [L=222]
Description: putative signal peptidase complex [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-51  174.1   0.2    2.2e-51  173.9   0.2    1.1  1  SPC25     Microsomal signal peptidase 25 kDa subunit (SPC25)
  ------ inclusion threshold ------
      0.054   13.6   0.2      0.082   13.0   0.2    1.2  1  NDUF_B6   NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit


Domain annotation for each model (and alignments):
>> SPC25  Microsomal signal peptidase 25 kDa subunit (SPC25)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.9   0.2   2.4e-55   2.2e-51       1     162 []      15     174 ..      15     174 .. 0.95

  Alignments for each domain:
  == domain 1  score: 173.9 bits;  conditional E-value: 2.4e-55
       SPC25   1 elKntlDdalkeyltdl....gfkeshtltdvrLalGylavaiaavaflydykveFeeskpvlaiavvlYfilsgiltlystfvekntifvgkrktgsk 95 
                 +lKnt+Ddal+ ylt+l    +f++sh +t+vrLa+Gylav ia+v+f++dyk++++++k ++a+a+v+Yf+l+g lt++++ ve++ +fvg+r+ g+ 
  KKY21501.1  15 DLKNTTDDALAPYLTSLpapyKFTQSHSYTNVRLAVGYLAVSIAGVLFYVDYKLGWDKTKDWTAAACVAYFLLNGFLTYWIWKVEAGKVFVGTREGGQ- 112
                 79***************99888*************************************************************************997. PP

       SPC25  96 riekitissslkklsptytltvsykdksnkgkslkakeleksvgewFdedGylveeefeqwlaklle 162
                    k+ +sss++k++p y+l+v+y+  s  gk+   k++e+++ +wF++dG+++  ++++wla++++
  KKY21501.1 113 ---KLMLSSSVQKHKPVYKLHVTYEAPS--GKKWDDKTIEAPFYRWFSADGFIQLPQLKKWLASEIQ 174
                 ...7********************5555..56666667*************************9985 PP

>> NDUF_B6  NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   9.1e-06     0.082      43     121 ..       3      78 ..       1      85 [. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.1e-06
     NDUF_B6  43 repvvvpaveeklnpierfyrafldklykvlkpllrlyvakavrvsvfklllvlvpvyivaYYlKYevkdwtrkkgyev 121
                  ep +vp     ln +++  +  l  +   l + ++++  +++     ++  + v++  v +Y+ Y+   w ++k ++ 
  KKY21501.1   3 TEPQKVP--VYSLNDLKNTTDDALAPYLTSLPAPYKFTQSHSYTNVRLAVGYLAVSIAGVLFYVDYKLG-WDKTKDWTA 78 
                 7899999..567899999999999998899**************************************9.*99999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 1387.69
//
Query:       KKY21502.1  [L=337]
Description: putative methylenetetrahydrofolate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-24   85.5   0.0    5.4e-24   84.7   0.0    1.3  1  THF_DHG_CYH     Tetrahydrofolate dehydrogenase/cyclohydrolase
    4.2e-13   48.9   0.0    5.1e-11   42.2   0.0    2.6  1  THF_DHG_CYH_C   Tetrahydrofolate dehydrogenase/cyclohydrolase
  ------ inclusion threshold ------
      0.035   14.0   0.0       0.07   13.0   0.0    1.4  1  DEDD_Tnp_IS110  Transposase
      0.083   13.5   0.0       0.21   12.2   0.0    1.7  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> THF_DHG_CYH  Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   1.2e-27   5.4e-24       6     116 .]      19     122 ..      15     122 .. 0.92

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 1.2e-27
                  HHHHHHHHHHHHHHHHHHHHT---EEEEEEES--HHHHHHHHHHHHHHHHTT-EEEEEEE-TT--HHHHHHHHHHHHH-TT--EEEE-SS-STTS-HH CS
  THF_DHG_CYH   6 alakeireelkeeveklkekgvkpkLavilvgddpasevYvrnkkkaceevGieseliklpedvseeellklieelneddsvdGilvqlPlpkhidek 103
                  ++ak++ +e++e ++++++    p+L +il+++dpa+++Y++ + k+c+e G++++l ++    ++e++ +++ ++n +d+vdGi+v++P+  + +++
   KKY21502.1  19 TIAKTLLAEVQEGLKQVQK---PPHLLGILANSDPAAKTYAEFTGKTCQENGFRYTLQTV----EKEDVEEALIAANGNDDVDGIIVYYPIFGSRQDQ 109
                  6899999999999999987...8*******************************999999....56778888*******************77778** PP

                  HHHCCS-GGGBTT CS
  THF_DHG_CYH 104 aileaispeKDVD 116
                  +++++++++KDV+
   KKY21502.1 110 YLQQIVDISKDVE 122
                  ************8 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   1.1e-14   5.1e-11      10     158 ..     143     311 ..     134     313 .. 0.80

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 1.1e-14
                    TT--SS--HHHHHHHHHHHHCT--.........-TT-EEEEE---TTTHHHHHHHHHC......................TT-EEEEE-TTSCCHH CS
  THF_DHG_CYH_C  10 kgeeallpctpkgvvellketgie.........legkkvvvvGrsnivgkplallLle......................knatVtvchsktkdla 74 
                    + ++ +lpctp +vv++l+  +i          l g++++vv+rs++vg+pla+lL++                      k+    v++ +  +l+
     KKY21502.1 143 QTQKSILPCTPLAVVKVLEFLHIYnpvlpygnrLFGHTICVVNRSEVVGRPLAALLANdgarvysvdvtgvqqfsrgegiKKKKHDVVDMEGWKLE 238
                    55889************997665434444444499***********************66666666555555555444444888889999999*** PP

                    HHHCCSSEEEE-SS-TT-.B-GGGS-TT-EEEE---EEC-TTEEE-SB-HHHHCTTSSEE--TTTSCHHHHHHHHHHHHHHHHHC CS
  THF_DHG_CYH_C  75 eitreadivvvavGkpel.ikaemvkegavviDvGinrvekgklvGDvdfeevkevasaitPvpgGVGpmTvamllkntleaakr 158
                    + +++ d+v+++v + ++    + ++egav i+   ++       G     evke+as++ P   ++G++T+++ll+n+l+++++
     KKY21502.1 239 DCISHCDVVITGVPSEGFkFPTHLLREGAVCINFSSEKN-----FG----PEVKEKASIYVP---AIGKVTITVLLRNLLRMVQN 311
                    ****************995677888****9987665555.....66....799*******99...58999**********99876 PP

>> DEDD_Tnp_IS110  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.6e-05      0.07      43      98 ..     175     231 ..     167     233 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
  DEDD_Tnp_IS110  43 akagevlvvveatghygallvaflleagitvvvvnplavkrlrkly.lrkaKtDakD 98 
                     + +g++ +vv  ++  g++l+a+l+++g +v+ v    v+++++ + ++k+K D +D
      KKY21502.1 175 RLFGHTICVVNRSEVVGRPLAALLANDGARVYSVDVTGVQQFSRGEgIKKKKHDVVD 231
                     56789999***********************************887699*****999 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.8e-05      0.21      10      74 ..     190     256 ..     189     268 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.8e-05
                    HHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC..-EEECECHHHHHHH-SEEEE-S-HHHH CS
  F420_oxidored  10 mgealasgllaagaqpheivvansrnpekaeelaeelg..vkvtavdneeaaeeadvvvlavkpedv 74 
                    +g+ la  l++ ga+ +++ v++ ++ ++ e ++++    v++++ + e++++++dvv+  v+ e +
     KKY21502.1 190 VGRPLAALLANDGARVYSVDVTGVQQFSRGEGIKKKKHdvVDMEGWKLEDCISHCDVVITGVPSEGF 256
                    688899999*****999999999**********9999899**********************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2360.17
//
Query:       KKY21503.1  [L=394]
Description: putative 3-ketoacylthiolase b [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-62  209.0   0.1    4.3e-59  200.0   0.1    2.4  1  Thiolase_N     Thiolase, N-terminal domain
    9.2e-47  157.7   0.2    2.7e-46  156.2   0.2    1.8  1  Thiolase_C     Thiolase, C-terminal domain
  ------ inclusion threshold ------
      0.018   14.6   0.3      0.047   13.3   0.1    1.7  2  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
       0.12   12.3   0.1       0.34   10.9   0.1    1.7  1  Homeobox_KN    Homeobox KN domain


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.0   0.1   9.6e-63   4.3e-59       1     260 []      19     262 ..      19     262 .. 0.88

  Alignments for each domain:
  == domain 1  score: 200.0 bits;  conditional E-value: 9.6e-63
                 EEEEEEEEE--EE.TTSTTTTS-HHHHHHHHHHHHHHHHT.S-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigk.fggslkdlsaeeLlaealkallekag.vdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaq 97 
                 +vi s+ rtp+++ ++g +kd+  eeL+ ++lka l+ ++ +dp+ +d+v++G vlq+  g         k+g+          ++csSgl+a++ +a 
  KKY21503.1  19 IVILSSLRTPVTRaYKGGFKDAYPEELGYHVLKATLAANPnLDPALIDDVAMGSVLQELGG--------YKSGL---------HRQCSSGLHAITVMAH 100
                 79************************************999****************9887........46788.........99************** PP

                 HHHTTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSS...EEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTT CS
  Thiolase_N  98 siaageadvvvagGvEsmsnaptaestdvrsglklgd...ekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkF 193
                 s++ g++++ + gG+Esm++++ +++   +    l+d   + a+d++           + mG+t+en+a++y++sRe+qd+f v+sh +a++aqk+gkF
  KKY21503.1 101 SLQNGNINIGIGGGMESMTRNYGSKAIPTVLWPDLKDspiKDARDCI-----------MSMGITSENVAERYGVSREDQDAFSVRSHLRASEAQKSGKF 188
                 *********************99998555533333330003333343...........468************************************** PP

                 TTTBE-EEEEESSSE.E......EE-S-TTS-TT--HHHHHTS-BSSSTTSS-BTTSB--BEEEEEEEEEEEHH CS
  Thiolase_N 194 kdeivPvkvkgkkgk.k......tvdkdeairsevtaekLaklkpaFkkeGtvtAgnasqisDGaaavllmses 260
                 ++ei+Pv++ +   +        t++kd++ir+ +t+e++ klkp+Fk +G  tAgn+sq+sDGaaa l+m++s
  KKY21503.1 189 DKEIIPVTTRSAPADgAekgetvTISKDDGIRHTATLESMTKLKPVFKPDGASTAGNSSQVSDGAAATLMMRRS 262
                 ********997543322345556************************************************985 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.2   0.2   5.9e-50   2.7e-46       6     121 ..     276     391 ..     271     393 .. 0.95

  Alignments for each domain:
  == domain 1  score: 156.2 bits;  conditional E-value: 5.9e-50
                 EEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--GGGBSTT--HHHH-B-TTTHHHHHHHHHHHHHHHCTTSE CS
  Thiolase_C   6 kirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldlekvNvnGGaialGHPlGasGaRivvtllselkkeggkl 104
                 k ++    g++p+++g+gPa ai+k+l+++gl+v+di+++EinEAFa+qa++++++l++d+ekvN nGGaialGHPlGa+GaR+++tll el++++++l
  KKY21503.1 276 KWVHSVAIGCTPDEMGVGPAIAIPKLLDQTGLQVNDINVWEINEAFASQAIYCVRKLEIDEEKVNPNGGAIALGHPLGATGARQLATLLPELERRQEQL 374
                 566677889****************************************************************************************** PP

                 EEEEEEETTTEEEEEEE CS
  Thiolase_C 105 gvaalCigggqgvalvi 121
                 gv+++Cig+g g+a+++
  KKY21503.1 375 GVISMCIGTGAGMAALF 391
                 **************987 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1     1e-05     0.047     174     208 ..      87     121 ..      68     128 .. 0.88
   2 ?   -3.6   0.0       1.5   6.5e+03     238     253 .]     249     264 ..     234     264 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1e-05
                    GGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---SH CS
  ketoacyl-synt 174 ACsSslvavhaavqslrsgeadvalaGGvellltp 208
                     CsS+l a+ ++ +sl++g++ + + GG+e ++  
     KKY21503.1  87 QCSSGLHAITVMAHSLQNGNINIGIGGGMESMTRN 121
                    6**********99*****************99865 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.5
                    BB-EEEEEEEEECHHH CS
  ketoacyl-synt 238 lGEGvGavvLkrleda 253
                    +++G++a +++r+++a
     KKY21503.1 249 VSDGAAATLMMRRSTA 264
                    6899999999998876 PP

>> Homeobox_KN  Homeobox KN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   7.6e-05      0.34      18      36 ..     300     318 ..     299     319 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.6e-05
  Homeobox_KN  18 eLlkeTglsvkqitnWFIN 36 
                  +Ll++Tgl+v++i+ W IN
   KKY21503.1 300 KLLDQTGLQVNDINVWEIN 318
                  59**************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.36s 00:00:00.98 Elapsed: 00:00:00.55
# Mc/sec: 2140.95
//
Query:       KKY21504.1  [L=674]
Description: hypothetical protein UCRPC4_g03608 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-58  196.6   0.9    4.7e-58  196.6   0.9    1.4  2  Rtf2           Rtf2 RING-finger
    3.3e-16   59.4   0.0    9.5e-16   57.9   0.0    1.8  1  Ribosomal_L50  Ribosomal subunit 39S
    2.9e-05   23.8   0.0       0.26   11.1   0.0    2.5  2  zf-Nse         Zinc-finger of the MIZ type in Nse subunit
  ------ inclusion threshold ------
      0.043   13.8   0.1       0.08   12.9   0.1    1.5  1  zf-RING_5      zinc-RING finger domain
      0.057   13.5   0.2       0.13   12.3   0.2    1.6  1  zf-RING_UBOX   RING-type zinc-finger


Domain annotation for each model (and alignments):
>> Rtf2  Rtf2 RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.6   0.9   1.3e-61   4.7e-58       1     257 [.       1     290 [.       1     295 [. 0.81
   2 ?   -4.3   0.3       2.6   9.3e+03     226     226 ..     512     512 ..     492     538 .. 0.36

  Alignments for each domain:
  == domain 1  score: 196.6 bits;  conditional E-value: 1.3e-61
        Rtf2   1 mGnDGGsipkRdelvkekkkkekv....d.keeekearwklCaLsqepLkkPivadrlGkLYnkdavleaLldkskekslskaas......hikglkdv 88 
                 mGnDGGsip+R+elvke++++  +    +  +e++ + w++C Ls++ L++Piv+d  G+LYnkd+vl++Ll    ++sl+k+ +      ++kglkdv
  KKY21504.1   1 MGNDGGSIPTRRELVKEAARNPTTsqlkEtIKEQQGFLWSTCPLSHKSLARPIVSDSAGNLYNKDSVLRFLLPDD-DGSLNKEDCervlggRVKGLKDV 98 
                 9****************777776655553356777799***********************************96.5777777777999********** PP

        Rtf2  89 velkltknpafeeskkdatkdtkeapfiCpltglemngktkfvalrkCGcVfsekalkevksevClvCgkeykeedviplnptke.elellkarleeek 186
                 ve++++  + ++         ++e+++iCp+t++e+ +++k v+l++CG+ fs++a+ke+k + Cl+C+++y+++ vip+ p  e +++ l+ar e   
  KKY21504.1  99 VEVQFEVSKGSK---------SSEERWICPVTSKELGPNVKSVYLVPCGHAFSAEAIKEMKADACLQCETPYDQDHVIPILPFAEeDMNRLRARSERLV 188
                 ******997433.........6789*********************************************************8776999*****99999 PP

        Rtf2 187 ak......kkkkkkakkkkkakakgskaeaeaaskssseas....................esskagkkkekkkekkkrslaekneksevyk....... 252
                 ++      kk+  ++kk+k++ ++ + +++  a+                           + + +g k++++++ +++ l+e++e+++++k       
  KKY21504.1 189 EQglthslKKAPGSTKKRKAKVESLKRTDKDGAKDV----IsgiatatpplrsmtpssgtsTPKGNGIKNAATASLTAKVLQEEEERKKRRKlmgenen 283
                 996665555555555555555555444444444333....14566899***********9966777778888888888888888888877774444444 PP

        Rtf2 253 ..slfts 257
                   +lft+
  KKY21504.1 284 lkNLFTK 290
                 4466665 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 2.6
        Rtf2 226 a 226
                  
  KKY21504.1 512 V 512
                 1 PP

>> Ribosomal_L50  Ribosomal subunit 39S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   2.7e-19   9.5e-16      13     109 ..     517     623 ..     502     624 .. 0.83

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 2.7e-19
  Ribosomal_L50  13 esykealgaelka..............kdegflqlsLeDlelKFaflkrlqqllgheipDykltklhtvkdlveyleevvnpkpkklaerlpnaie 94 
                    ++y+e+++a  ++              +de+fl++sL+Dle++F ++kr+  l+g  ipD+++t+l+t+++l+++l   ++p+  k ae l ++ +
     KKY21504.1 517 DAYEETTDATPEEsadrrtqfatyptpTDESFLSFSLSDLETRFVLTKRIAFLTGRLIPDPTITSLTTLSSLLDFLLADTRPQNPKVAEILSSKPD 612
                    4555555555555666788888999999************************************************66666666678888888888 PP

  Ribosomal_L50  95 lrsedfklpNVkine 109
                    l s    lpNV++ +
     KKY21504.1 613 LIS----LPNVTVKD 623
                    888....****9976 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   7.2e-05      0.26      12      44 ..      40      77 ..      30      93 .. 0.83
   2 !    9.9   0.1   0.00018      0.64      13      51 ..     117     157 ..     105     160 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.2e-05
                SB-TTTSSB-SSEEEESSS--EEEHHHHHHHC.....T CS
      zf-Nse 12 lkCPltlqpfeePvtskkCpHvFEreaIleli.....k 44
                 +CPl+ + + +P+ s      ++++++l+++      
  KKY21504.1 40 STCPLSHKSLARPIVSDSAGNLYNKDSVLRFLlpdddG 77
                58****************************99666552 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00018
                 B-TTTSSB-SSEEEES...SS--EEEHHHHHHHCTTTS-EE- CS
      zf-Nse  13 kCPltlqpfeePvtsk...kCpHvFEreaIlelikrkktvkC 51 
                  CP+t +++   v+s     C H F  eaI e+     + +C
  KKY21504.1 117 ICPVTSKELGPNVKSVylvPCGHAFSAEAIKEMK-ADACLQC 157
                 59999999998899889999***********994.6666666 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   2.2e-05      0.08       2      43 ..     118     158 ..     117     159 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.2e-05
   zf-RING_5   2 CnkCfekl.skeekfyltsCgHifCekClkkllekeavCpiCr 43 
                 C++ +++l  + + +yl++CgH f  + +k+ +   + C +C+
  KKY21504.1 118 CPVTSKELgPNVKSVYLVPCGHAFSAEAIKEMK--ADACLQCE 158
                 78888888666677**********999999999..*******7 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   3.6e-05      0.13       1      29 [.     118     148 ..     118     164 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.6e-05
  zf-RING_UBOX   1 CpIClelftdP...lv.l.pCGHtFCreClwels 29 
                   Cp+   ++  P    v l pCGH F  e ++   
    KKY21504.1 118 CPVTSKELG-PnvkSVyLvPCGHAFSAEAIK--E 148
                   888887774.445734466**********93..2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       859  (0.0479112); expected 358.6 (0.02)
Passed bias filter:                      597  (0.033298); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.50
# Mc/sec: 4023.64
//
Query:       KKY21505.1  [L=332]
Description: putative ketoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-16   58.6   0.0      1e-15   57.9   0.0    1.3  1  Epimerase       NAD dependent epimerase/dehydratase family
    1.9e-09   36.9   0.0    2.7e-09   36.5   0.0    1.2  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
    3.3e-08   33.0   0.0    0.00058   19.1   0.0    2.1  2  NAD_binding_4   Male sterility protein
    7.8e-08   32.1   0.0    1.1e-07   31.5   0.0    1.3  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
    6.2e-06   26.2   0.0    1.3e-05   25.2   0.0    1.6  2  NAD_binding_10  NAD(P)H-binding
  ------ inclusion threshold ------
       0.14   12.6   0.0       0.29   11.6   0.0    1.5  1  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   3.5e-19     1e-15       1     232 [.       3     254 ..       3     262 .. 0.79

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 3.5e-19
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HHHHHHHHHHH.T-SEEEE--S---HHHHHHSHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrsalerlfkee.qpdavihlAavggvaassedpadfiek 90 
                 +l+tG++Gfi ++ ++ ll+++++v++  r   ++++ ++++          ++  d+ ++ a+++++k+e  +da +h    +  ++++++p++++e 
  KKY21505.1   3 VLLTGGSGFIAAHCLDILLAHKHTVVTTVRSAAKGQKILDAHPdvpkgqlsYVIVEDIAKPGAFDEAVKSEpPFDACLHT--ASPFHHNFDKPTELLEP 99 
                 699*********************999999988888777777799***99988899***************999******..6788899********** PP

                 HTHHHHHHHHHHHHH..TCTEEEEEEEGGGGTSCSSSS...BSTCSTTS--.......--SSHHHHHHHHHHHHHHHHHHHHT..-EEEEEEESEEEST CS
   Epimerase  91 nlqgtlnlleaarka..gvkrllflsSsevYGkdaeqp...keettltgpl.......kpnspYaaaKlageklveayaaqyg..lnaiilrlfnlyGp 175
                  ++gt+ +l+a++++  ++kr+   sS +   ++++ p   +e++    p+         ++ Y a+K+++ek ++++ +  +  + + ++++  +yGp
  KKY21505.1 100 AVNGTVGILKAIKASapNIKRVAITSSFAAIVNVQKHPekyDESVW--NPVtyedginDRSQTYRASKTLAEKAAWEFIEREKpsFTISTINPPMVYGP 196
                 *************9988999*******7777777776776544444..333336667788899***************99885336666799******* PP

                 T.S-TTSTTSHHHHHHHHHHT..TSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT- CS
   Epimerase 176 r.ngegevsrvipalirkile..gkqevtllgdgtalRdflyveDvaeaillvlehvdag 232
                   ++ ++ +++ +  +r + +  g+ +  l    +a   +++v+D+a a+++++e ++a 
  KKY21505.1 197 IvHYLNNLDSINTSNARFVSLirGEWKTGLPP--SATNIWVDVRDLALAHVRAIEVPEAA 254
                 *7333333333333333222232442333333..45567****************98875 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   8.9e-13   2.7e-09       2     249 ..       5     261 ..       4     279 .. 0.71

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 8.9e-13
   3Beta_HSD   2 vtGgaGFlGralvkeLvrlee..lkevrvlDlrespelleelskvnvkk...viegDvtdkdkleealeg...vdvvihlaslvdvagkltedeimkvn 92 
                 +tGg+GF+ ++    L+  ++  + +vr++  ++++++l+    v   +   vi  D+ +    +ea+++    d+ +h+as       ++  e+ +  
  KKY21505.1   5 LTGGSGFIAAHCLDILLAHKHtvVTTVRSA--AKGQKILDAHPDVPKGQlsyVIVEDIAKPGAFDEAVKSeppFDACLHTASPFHHNF-DKPTELLEPA 100
                 79****************999556677766..556666665555544444449999************98444699****88766554.77788***** PP

   3Beta_HSD  93 vkGTrnvleacvka..gvrvlvYtSsaevvgpnslgeeilngdEeleyesl.......hqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiy 182
                 v+GT  +l+a + +  +++++  tSs  ++ +   +++  + dE+   + +        +++y  sK laEk+  +  +   ++   +    + p ++y
  KKY21505.1 101 VNGTVGILKAIKASapNIKRVAITSSFAAIVN--VQKHPEKYDESVWNPVTyedgindRSQTYRASKTLAEKAAWEFIE---REKPSFTISTINPPMVY 194
                 *********98765338*************98..4444455778766665522233336679*********99888777...6666899999******* PP

   3Beta_HSD 183 Gegdkllvpl..lk....qlaklglalfkigd.eevlsdrvYvgNvawahilAaralqdpkkkssvagqayfis 249
                 G+  + l +l  ++    + + l     k+g  +++++ +v v  +a ah+ A      p    ++ag+ +f++
  KKY21505.1 195 GPIVHYLNNLdsINtsnaRFVSLIRGEWKTGLpPSATNIWVDVRDLALAHVRAIE---VP----EAAGKRFFVT 261
                 **98877654112200002222233334555424566678999999999986643...33....5666666665 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   2.9e-05     0.086       1      36 [.       5      39 ..       5      57 .. 0.86
   2 !   19.1   0.0   1.9e-07   0.00058      89     209 ..      77     205 ..      64     237 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.9e-05
                   EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-.SSSHHH CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiyllvR.aksges 36
                   lTG++GF++++ l  LL  +   +++  vR a +g++
     KKY21505.1  5 LTGGSGFIAAHCLDILLAHKH--TVVTTVRsAAKGQK 39
                   8****************9998..8999***5455544 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 1.9e-07
                    -EEEE--SS-S.ST.TSSEEHHHHHHHHHHHHHHHTSSS--..-EEEEEE..GGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHH CS
  NAD_binding_4  89 dviihsaAtvnfde.pykellrvNveGtrevlelakklkkl.kvllhvST..ayvngeregeveekvyeegekeekldederaklkglpntYeqsK 180
                    d+ +h a   +++  +  ell++ v+Gt+ +l+  k+ + + k +   S+  a+vn +++    ek+ e    ++    + ++  ++ ++tY  sK
     KKY21505.1  77 DACLHTASPFHHNFdKPTELLEPAVNGTVGILKAIKASAPNiKRVAITSSfaAIVNVQKH---PEKYDE----SVWNPVTYEDGINDRSQTYRASK 165
                    7778999998888724456**************999655553788888888666665555...355554....34445555666777889****** PP

                    HHHHHHHHHHHHHH-..--EEEEEE-EEE-.........- CS
  NAD_binding_4 181 alaEklvrearrrsg..lpvvivRpsiitg.........e 209
                     laEk   e  +r++  + ++ + p++++g         +
     KKY21505.1 166 TLAEKAAWEFIEREKpsFTISTINPPMVYGpivhylnnlD 205
                    ******99988774411457889*****996655543332 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   3.8e-11   1.1e-07       1     140 [.       4     137 ..       4     196 .. 0.76

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 3.8e-11
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH.T-SEEEE--S---HHHHTTSH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev.qpdevynLAAqshVdvsfekP 95 
                    L TG++Gfi ++ ++ Ll+ +++v+ +vr +++ + + +++  + pk +      ++  D+    + ++++++   +d+ ++ A     +  f+kP
     KKY21505.1   4 LLTGGSGFIAAHCLDILLAHKHTVVTTVRSAAKGQ-KILDAHPDVPKGQ---LSYVIVEDIAKPGAFDEAVKSEpPFDACLHTAS--PFHHNFDKP 93 
                    78***********************9999888765.5566655555543...3456778***********998846799999885..56689**** PP

                    HHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSS CS
  GDP_Man_Dehyd  96 eytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevp 140
                     + +e  v Gt+ +L+ai+a    + +r+ ++S+     +vq++p
     KKY21505.1  94 TELLEPAVNGTVGILKAIKASA-PNIKRVAITSSFAAIVNVQKHP 137
                    ******************9975.4567888888866666666555 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   4.4e-09   1.3e-05       1     120 [.       7     148 ..       7     185 .. 0.73
   2 ?   -2.7   0.0       1.5   4.5e+03     101     120 ..     270     289 ..     239     316 .. 0.58

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 4.4e-09
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCH.......HHHCTTTCEEEE--TT-CCHHHHHHT...T-SEEEES---TCC..HHHH...... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpekla.......eleaeeglevvegdvtdvedlaealk...gadaVvsalggggk..deeg...... 77 
                     G++G ++ + ++ lla++ h+v+  vR+++k +       ++++ +   v++ d+ ++ +  ea+k     da + ++++ +   d+ +      
      KKY21505.1   7 GGSGFIAAHCLDILLAHK-HTVVTTVRSAAKGQkildahpDVPKGQLSYVIVEDIAKPGAFDEAVKsepPFDACLHTASPFHHnfDKPTellepa 100
                     9****************5.*********9999833333334443333447778999999999999955556999999977655563333455666 PP

                     ...HHHHHHHHHHC..T--EEEEEEETTTTSGCGCHHHHHHHHCCHHH CS
  NAD_binding_10  78 ...aknivdaakea..gvkRfvlvsaigvgdevpgefgewnkellkay 120
                        ++ i++a k++  ++kR+ + s++ +  +v+++ +++++++++++
      KKY21505.1 101 vngTVGILKAIKASapNIKRVAITSSFAAIVNVQKHPEKYDESVWNPV 148
                     777*******9985338*********9998888887777666655554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.5
                     TTSGCGCHHHHHHHHCCHHH CS
  NAD_binding_10 101 vgdevpgefgewnkellkay 120
                     + d v+++f+e++++l ++y
      KKY21505.1 270 IADIVKKNFPEYADKLPAEY 289
                     22224445555555555444 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.6e-05      0.29       1      58 [.       2      58 ..       2      75 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.6e-05
                    EEEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSG.GGTTTECEBEEE CS
  Semialdhyde_dh  1 kvaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavk.aleegkdlkved 58
                    kv + G++G + +  l +L  h++  ++++ s ++  G+k+ +a++  ++++  +++ +
      KKY21505.1  2 KVLLTGGSGFIAAHCLDILLAHKHTVVTTVRSAAK--GQKILDAHPdVPKGQLSYVIVE 58
                    68899******************999988766665..*********6444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.51
# Mc/sec: 1945.23
//
Query:       KKY21506.1  [L=551]
Description: hypothetical protein UCRPC4_g03610 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-81  274.1   0.0    1.5e-79  268.2   0.0    2.0  1  Mit_ribos_Mrp51  Mitochondrial ribosomal protein subunit


Domain annotation for each model (and alignments):
>> Mit_ribos_Mrp51  Mitochondrial ribosomal protein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.2   0.0   8.5e-84   1.5e-79       1     363 [.       8     455 ..       8     457 .. 0.77

  Alignments for each domain:
  == domain 1  score: 268.2 bits;  conditional E-value: 8.5e-84
  Mit_ribos_Mrp51   1 lsplaaLLRnSRLfslpkplpppa.......lsasdtatlpyPthqaItTpksslargdWGLKrslPlksttskvsspvirvna.lDtiehitd 86 
                      lsp a+LLR SRLf+lp+plpp+           sdtat+pyPt +aI+T + +++rg+WGLKr+lPlkstt ++++p+ir+++ +Dt ehit+
       KKY21506.1   8 LSPSASLLRGSRLFALPQPLPPAVtgasatsGGYSDTATTPYPTYAAIETSSDARSRGEWGLKRPLPLKSTT-NTGTPYIRIKDgIDTREHITN 100
                      5899******************889**999855679************************************.**********99********* PP

  Mit_ribos_Mrp51  87 fesaadhtltlkkfqElgipl......kssekeakakkSvFeeeadvtsekakekedkrwkfkgPllagmtegelseylkkk......vrkrrk 168
                      fe aadh+ltlkkfq l+ip+       ++ +   ++++ F+e + + + ++++   krw+++gP+l+gm+++ ++ +l+         r+ ++
       KKY21506.1 101 FEAAADHVLTLKKFQALNIPVllqdatGRNADPVGQNSTPFDEWN-TWRPAKHRPGPKRWRTDGPWLPGMSNARFDWWLNGGlkhpglKRSEKE 193
                      *********************888664444444555666677664.55999*****************************99889997788899 PP

  Mit_ribos_Mrp51 169 eFkkfLreklaeektaearraalekge..ealkekiseeelkey.................................................. 210
                       F+++Lr ++ ee+ +++    + +++        i ++ l++                                                   
       KKY21506.1 194 TFQNYLRREMIEEIVHQNGISETSAEAswI-----IASKTLETFidtaraagddtavivekallqagfpvnprgnpsmqqppkttnpelrasin 282
                      9*********96666665544444433221.....33333333311111111122222333333334444444444444454444444444455 PP

  Mit_ribos_Mrp51 211 ......lkklradrqklyklvseFLdlaplkskeaaeekasaelskakr...........................eqgppkthpsaGLsYlrt 271
                            l+ lra ++k+ + +++  dla +++k                                            +g p+thpsaGL Ylr 
       KKY21506.1 283 slfrnyLRVLRASPAKFASFLQQHFDLADTSEKG--------------IdndgeplewkigpadqrdsslmsyiyrLTGMPSTHPSAGLGYLRA 362
                      5555556666666666666666666666666665..............03344444444445566999*******9889*************** PP

  Mit_ribos_Mrp51 272 gaylenhPlygpqkqktpvpaRvlsprtsatg.e.skaklgvGGfvandpssstsaskvsagleaidpdlergakipvevkeasvdsdGrirle 363
                      +a+ +nhPlygpq+q  p++aRvl+p  +      ++aklg +Gfv +++ss    ++ +++l+++    ++g+k pv++++a v+ +Gr +l+
       KKY21506.1 363 AAVARNHPLYGPQSQSDPIQARVLQPGVKGVVdRrREAKLGAAGFVSESNSSLWDGRDSESNLREF-VPQPGGNKHPVRPTHAFVTPEGRTTLS 455
                      *************************99887764479***************999999999999999.679********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.51
# Mc/sec: 3273.79
//
Query:       KKY21507.1  [L=144]
Description: putative 40s ribosomal protein s17 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-59  197.7   0.4    5.4e-59  197.5   0.4    1.1  1  Ribosomal_S17e  Ribosomal S17


Domain annotation for each model (and alignments):
>> Ribosomal_S17e  Ribosomal S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.5   0.4     3e-63   5.4e-59       1     118 [.       1     124 [.       1     130 [. 0.91

  Alignments for each domain:
  == domain 1  score: 197.5 bits;  conditional E-value: 3e-63
                     XX----HHHHHHHHHHHHS-TTT--S-HHHHHHHHHHHS----SHHHHHHHHHHHHHHHHTTSS--SS---HHHHHHHHHHH---------.... CS
  Ribosomal_S17e   1 mgrvrtktvKkaarviiekyyskltndFhtnkkvceevaiipskklrnkiaGyvthlmkriqkgpvrgislklqeeererrdnyvpevsal.... 91 
                     mgrvrtktvKk+a+viie+yy+klt+dF+tnk++c+e+aii+sk+lrnkiaGy+thlmkriq+gpvrgis+klqeeerer+d+yvpe+sal    
      KKY21507.1   1 MGRVRTKTVKKSAKVIIERYYPKLTLDFETNKRLCDEIAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEISALdftq 95 
                     9******************************************************************************************6654 PP

                     ----....----HHHHHHHHHH-X.XXXXXX CS
  Ribosomal_S17e  92 dqea....ievdkdtkemlkslgfeslsnle 118
                     +  +    ++vd dtk++lkslgf+ +s   
      KKY21507.1  96 N--TesgqLDVDADTKDLLKSLGFDGISVNV 124
                     2..14567****************9887333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 981.23
//
Query:       KKY21508.1  [L=1224]
Description: putative sh3 domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-11   41.2   0.1    1.7e-10   40.3   0.1    1.5  1  SH3_1     SH3 domain
    1.3e-10   40.9   0.1    2.8e-10   39.9   0.1    1.6  1  SH3_9     Variant SH3 domain
    5.5e-08   32.4   0.0    1.2e-07   31.3   0.0    1.5  1  SH3_2     Variant SH3 domain


Domain annotation for each model (and alignments):
>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.1   2.9e-14   1.7e-10       1      47 [.       9      58 ..       9      59 .. 0.97

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 2.9e-14
                EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTS...TEEEEEE CS
       SH3_1  1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgt...gkeGliP 47
                +A+Y+Y   ++d+L+f  G vi+v e +ed+W++g+++++   +keGl+P
  KKY21508.1  9 KAIYEYSSPHEDDLNFSIGQVITVTEAEEDDWYTGEYTDDsgsKKEGLFP 58
                7*************************************99999******* PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.1   4.7e-14   2.8e-10       1      49 []      10      63 ..      10      63 .. 0.90

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 4.7e-14
       SH3_9  1 AlypyepreddeLsLqrGDvitvieesedgWlegsl...tG..rtGlvPanyve 49
                A+y y  +++d L ++ G+vitv e +ed+W+ g++   +G  + Gl+P+n+ve
  KKY21508.1 10 AIYEYSSPHEDDLNFSIGQVITVTEAEEDDWYTGEYtddSGskKEGLFPRNFVE 63
                89********************************9444544569********97 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0     2e-11   1.2e-07       2      55 ..       8      63 ..       7      64 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 2e-11
                EEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE.C....CCEEEEEGCGEE CS
       SH3_2  2 vraiedyvgedkseLsfkkGdvikvlslgskdsdgwwegev.g....GrvGlfPsslve 55
                v+ai +y ++ ++ L+f  G+vi v+   + + d+w+ ge+ +    ++ GlfP+++ve
  KKY21508.1  8 VKAIYEYSSPHEDDLNFSIGQVITVT---EAEEDDWYTGEYtDdsgsKKEGLFPRNFVE 63
                899***********************...99********99635655666*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1022  (0.0570026); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.11u 0.37s 00:00:01.48 Elapsed: 00:00:00.54
# Mc/sec: 6822.49
//
Query:       KKY21509.1  [L=290]
Description: hypothetical protein UCRPC4_g03613 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-23   80.3   0.4    1.8e-22   79.4   0.4    1.5  1  RPAP2_Rtr1  Rtr1/RPAP2 family


Domain annotation for each model (and alignments):
>> RPAP2_Rtr1  Rtr1/RPAP2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.4     1e-26   1.8e-22       2      75 .]      77     153 ..      76     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 1e-26
                 G--HHHHHHHHHHHHCTT--SSTT--S--SS-----------.........--TTGGGGT-SSHHHHHHHHHHHHCS- CS
  RPAP2_Rtr1   2 llspsdyddvveERniekkCGyplCnnsleedkrqkekyris....rkakkvvereelekfCSkaCaerslavraqLs 75 
                  ++++dydd+++ERni++kCGy+lC++++++d+ ++ + ri      ++ k+v+r+elek+CS++Caer+++vr+qL+
  KKY21509.1  77 TFQQRDYDDLITERNISDKCGYTLCHRPKKKDE-TTATDRILwgekGTELKIVPRAELEKWCSQKCAERAMFVRVQLN 153
                 79***************************9999.4444444444559*****************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.34s 00:00:00.89 Elapsed: 00:00:00.51
# Mc/sec: 1707.08
//
Query:       KKY21510.1  [L=721]
Description: putative ap-2 adaptor complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   7.7e-112  374.5  11.9   9.8e-112  374.2  11.9    1.0  1  Adaptin_N       Adaptin N terminal region
    5.6e-56  189.1  11.3    2.4e-54  183.7   1.1    3.7  4  Cnd1            non-SMC mitotic condensation complex subunit 
    2.2e-13   50.4   7.3    3.9e-07   30.4   0.1    4.5  5  HEAT_2          HEAT repeats
    8.3e-10   38.1   6.0      0.006   16.7   0.0    6.3  8  HEAT            HEAT repeat
    0.00013   22.3   4.1         21    5.8   0.0    6.4  7  HEAT_EZ         HEAT-like repeat
    0.00084   19.3   0.9        1.8    8.7   0.0    4.6  4  Arm             Armadillo/beta-catenin-like repeat
     0.0043   16.6   0.8        1.7    8.2   0.0    3.2  3  CLASP_N         CLASP N terminal
  ------ inclusion threshold ------
      0.042   14.0   1.2        3.2    8.0   0.0    3.7  4  RTP1_C1         Required for nuclear transport of RNA pol II 
      0.059   12.5   0.0       0.21   10.7   0.0    1.9  2  N_Asn_amidohyd  Protein N-terminal asparagine amidohydrolase


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  374.2  11.9  4.9e-115  9.8e-112      17     522 ..      25     526 ..       8     528 .. 0.93

  Alignments for each domain:
  == domain 1  score: 374.2 bits;  conditional E-value: 4.9e-115
                 S...-SCHHHHHHHHHHHHHHHCT-.--GHHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCCSSSHHHHHHHHHHHCCC--CCC CS
   Adaptin_N  17 k...dddekkkeavkkliylialGe.dvsflffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlkdpnqlirglALrvLssirvpel 111
                      +++ kk a+kk+++ ++ ++ d+  lf++++ +++ + +e+K++++lyl+++a  ++d           D+ dpn+l+r+lALr++s + v+e 
  KKY21510.1  25 GkkdRNNSAKKIALKKIVANMTMSNnDMVALFPDIISCMQISSLEIKKMCFLYLVNYARLKPD---------IADMDDPNPLVRALALRTISYVHVKEF 114
                 233345556666*****987765555*************************************.........67************************* PP

                 HHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHH.HCCCCCCCHHHHHHHCCHHHHHHCS-HHH CS
   Adaptin_N 112 aedlapaikkllkdrspyvrkkAalailklykkdpdllrkq.lveeikellsdkdpgvvlaAvalleei.kkndrlllkllpklvrrLcnllteldpwl 208
                 +e+ ++ +k+l++d++pyvrk++a +++kly+ d+ l++   l++++   l+d++p v+++A+a+l  i ++++ + l++    ++++  ++ ++++w 
  KKY21510.1 115 VESTVQPLKRLMSDPDPYVRKTSAFCVAKLYDHDKRLVEISdLIDRLNRMLKDENPTVIASALAALMDIwERSESIKLTIDYASASKIVSIMPDCSEWS 213
                 *********************************************************************88888885566667788999999******* PP

                 HHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST.......HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHXXT CS
   Adaptin_N 209 qvkiiklltrlarqepeerskkellesllnllqssnnaVlletvnlivelapkne.......livlavnaLvrllsskdenlryvaLrtllkivkkepk 300
                 q++i++ + ++++q ++++  ++l e++ ++l++sn aV+l +v+++ +l++  +       l +++   Lv+ll + +e ++y+aLr+   i++++ +
  KKY21510.1 214 QTYILEAMMAYVPQSTDDA--NLLAERIAPRLSHSNSAVVLTCVRVVLYLMNYIAdekqitaLSKKLSPPLVTLLAKGPE-VQYLALRNAILILQRR-P 308
                 *******************..9**************************88888888888999999***************.****************.9 PP

                 TTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTXXHHHHHHHHH CS
   Adaptin_N 301 avqhldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevadedfksklvkaIgrlaekfatdaewvldvllellslsgesvkdeive 399
                  v + d+++f++k++d+++++ ++l+l + l+d++N++ ++ eL +y++e+ d  f++k+v+aIg+la+k+++ a++++++ll+l   +  ++++e+ +
  KKY21510.1 309 DVLRSDIRVFFCKYNDPIYVKVTKLELIFMLADKKNIDVVLAELREYATEI-DVHFVRKAVRAIGKLAIKIESAARQCIETLLDLVNAKIPYIVQEATV 406
                 9999***********************************************.999******************************************** PP

                 HHHHHHHHSTTTSTTCHHHHCCTCCGXXSHHHHHHHHHHHHHTTTTXTT...HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THXHHHHHH CS
   Adaptin_N 400 virdliqkvpelheeiiekLaellekieseearaaaiWllGeygelvsntesasdllrslaekfvlesekvklqiltalvKlyltspdketqekliqlv 498
                 vir++++k+p++ e+ii++++  +++++++ea+aa+iW++G+y++++ +     dllr  +  f++es++v+l++lta vKl+ + p+k + +++ q++
  KKY21510.1 407 VIRNIFRKYPNQYESIITTVISNIDDLDEPEAKAAIIWIIGQYADRIDR---SDDLLRDYLATFHDESVEVQLALLTATVKLFIQRPTKGS-SLVPQIL 501
                 ************************************************9...***********************************7666.4666777 PP

                 HHHHH.XXSHHHHHHHHHHHHHHCC CS
   Adaptin_N 499 lslat.ssdlevrdRaveylqllss 522
                 + +++ ++d ++rdR ++y++lls+
  KKY21510.1 502 KWCTEeTDDPDLRDRGYMYWRLLST 526
                 77777988**************986 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1       0.2     4e+02      76     118 ..      35      77 ..      13      82 .. 0.72
   2 !  183.7   1.1   1.2e-57   2.4e-54       1     162 []      97     260 ..      97     260 .. 0.98
   3 ?   -0.7   0.0      0.64   1.3e+03     122     145 ..     260     282 ..     259     288 .. 0.88
   4 !    9.1   0.2   0.00061       1.2      38     113 ..     364     438 ..     336     500 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.2
        Cnd1  76 analaalteiseksenaiynllpdiisklsdalnecsewgqit 118
                 + al  +    ++s+n ++ l+pdiis ++ +  e+++ ++ +
  KKY21510.1  35 KIALKKIVANMTMSNNDMVALFPDIISCMQISSLEIKKMCFLY 77 
                 44444444444558899**********9997777777666655 PP

  == domain 2  score: 183.7 bits;  conditional E-value: 1.2e-57
        Cnd1   1 liRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilnd..mvkekgflselaklleDenprVvanalaalteiseksenaiynll 97 
                 l+Rala+rt+++++v+++ve +v+pL++ ++D+dpyVRkt a++vakL+++d  +v+ ++++++l+++l+Denp+V+a+alaal++i+e+se++ +++ 
  KKY21510.1  97 LVRALALRTISYVHVKEFVESTVQPLKRLMSDPDPYVRKTSAFCVAKLYDHDkrLVEISDLIDRLNRMLKDENPTVIASALAALMDIWERSESIKLTID 195
                 79**********************************************8887669************************************9******* PP

        Cnd1  98 pdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlqhansavvlaaikviLs 162
                   ++sk+++ + +csew+q++ile+++ y+p+++ +a+ l+e+++prl+h+nsavvl++++v+L+
  KKY21510.1 196 YASASKIVSIMPDCSEWSQTYILEAMMAYVPQSTDDANLLAERIAPRLSHSNSAVVLTCVRVVLY 260
                 ***************************************************************97 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.64
        Cnd1 122 fLlsyipkdkqeaeslveklcprl 145
                 +L++yi+++kq +  l +kl p l
  KKY21510.1 260 YLMNYIADEKQ-ITALSKKLSPPL 282
                 699*******9.999999998865 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00061
        Cnd1  38 RktaaivvakL.ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecse 113
                  + a+ ++ kL i+ +    ++ +++l++l++ + p +v+ a  ++ +i +k +n+  ++  ++is++  +l+e + 
  KKY21510.1 364 VRKAVRAIGKLaIKIESA-ARQCIETLLDLVNAKIPYIVQEATVVIRNIFRKYPNQYESIITTVISNID-DLDEPEA 438
                 456899999996555554.5678*****************************99*************99.4454333 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.1     2e-10   3.9e-07      10      87 ..      92     180 ..      87     181 .. 0.79
   2 ?    5.0   0.1     0.016        31      31      58 ..     156     183 ..     148     193 .. 0.81
   3 ?   -2.0   0.1       2.5   5.1e+03      36      70 ..     239     277 ..     231     288 .. 0.70
   4 !   10.3   0.1   0.00037      0.73      17      83 ..     332     405 ..     327     408 .. 0.77
   5 !   10.3   0.1   0.00036      0.72      12      80 ..     434     514 ..     423     517 .. 0.72

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 2e-10
      HEAT_2  10 ndpdpevrraairaLgrignp....ealpaLvellededpavRraaaeaLgaigdpe........alpaLkellddddddvvReaAaeaL 87 
                 +dp+p vr+ a+r++   + +    ++++ L +l++d+dp+vR++ a   +++ d++         ++ L ++l+d++  v+ ++A+ aL
  KKY21510.1  92 DDPNPLVRALALRTISYVHVKefveSTVQPLKRLMSDPDPYVRKTSAFCVAKLYDHDkrlveisdLIDRLNRMLKDENPTVI-ASALAAL 180
                 79**************87765455588**************************76333344444389999999987766665.5566665 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.016
      HEAT_2  31 ealpaLvellededpavRraaaeaLgai 58 
                 ++++ L ++l+de+p v + a  aL  i
  KKY21510.1 156 DLIDRLNRMLKDENPTVIASALAALMDI 183
                 67899999999***99999999999876 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.5
      HEAT_2  36 LvellededpavRraaaeaL....gaigdpealpaLkel 70 
                 + + l+++++av  + ++        i+d++ + aL + 
  KKY21510.1 239 IAPRLSHSNSAVVLTCVRVVlylmNYIADEKQITALSKK 277
                 667788888888888887442222456677777777665 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.00037
      HEAT_2  17 rraairaLgrign.pealpaLvellededpavRraaaeaLgaig......dpealpaLkellddddddvvReaA 83 
                 + + i  L++++n + +l+ L+e+++  d +  r a++a+g+++        + ++ L++l++ +  ++v+ea+
  KKY21510.1 332 KLELIFMLADKKNiDVVLAELREYATEIDVHFVRKAVRAIGKLAikiesaARQCIETLLDLVNAKIPYIVQEAT 405
                 67889999977663667************************885545332455688888888888888887765 PP

  == domain 5  score: 10.3 bits;  conditional E-value: 0.00036
      HEAT_2  12 pdpevrraairaLgrignp..ealpaLvell...ededpavRraaaeaLgai.......gdpealpaLkellddddddvvR 80 
                  +pe ++a+i+ +g+++++  ++ ++L+++l    de+ +v+ a  +a +++       g++ + ++Lk +  ++dd++ R
  KKY21510.1 434 DEPEAKAAIIWIIGQYADRidRSDDLLRDYLatfHDESVEVQLALLTATVKLfiqrptkGSSLVPQILKWCTEETDDPDLR 514
                 57899*********99987668888888877655788899*********98877666633443444444444444555555 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0047       9.5       9      24 ..      91     106 ..      86     109 .. 0.86
   2 !   16.7   0.0     3e-06     0.006       4      29 ..     121     146 ..     119     147 .. 0.87
   3 !   10.9   0.1   0.00023      0.46       1      29 [.     157     185 ..     157     187 .. 0.90
   4 ?   -0.7   0.0       1.2   2.4e+03       5      23 ..     239     257 ..     235     264 .. 0.82
   5 ?   -2.6   0.0       4.9   9.7e+03      19      28 ..     366     375 ..     364     376 .. 0.83
   6 ?   -2.3   0.0       3.9   7.8e+03       2      28 ..     423     450 ..     422     452 .. 0.80
   7 ?   -2.1   0.0       3.4   6.8e+03       9      23 ..     467     481 ..     462     485 .. 0.79
   8 ?   -1.9   0.0         3     6e+03       1      11 [.     496     506 ..     496     515 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0047
                 HT-SSHHHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAakaL 24 
                 + Dp+p VR+ A++++
  KKY21510.1  91 MDDPNPLVRALALRTI 106
                 48***********998 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 3e-06
                 HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgalae 29 
                 +l +l+sDp+p VR+++a ++++l+ 
  KKY21510.1 121 PLKRLMSDPDPYVRKTSAFCVAKLYD 146
                 567889***************99976 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00023
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 l++ l ++l+D++p V ++A+ aL ++ e
  KKY21510.1 157 LIDRLNRMLKDENPTVIASALAALMDIWE 185
                 5777889******************9986 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 1.2
                 HHHHHT-SSHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAaka 23 
                 +   ls++++ V  ++++ 
  KKY21510.1 239 IAPRLSHSNSAVVLTCVRV 257
                 677899******9999986 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 4.9
                 HHHHHHHHHH CS
        HEAT  19 aAakaLgala 28 
                  A++a+g+la
  KKY21510.1 366 KAVRAIGKLA 375
                 5999999987 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 3.9
                 HHHHHHHHT-.SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsD.pspeVReaAakaLgala 28 
                 + ++++++ D ++pe  +a ++ +g+ a
  KKY21510.1 423 ITTVISNIDDlDEPEAKAAIIWIIGQYA 450
                 5667888888899999999999999876 PP

  == domain 7  score: -2.1 bits;  conditional E-value: 3.4
                 HT-SSHHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAaka 23 
                  +D+s eV  a + a
  KKY21510.1 467 FHDESVEVQLALLTA 481
                 68******9997765 PP

  == domain 8  score: -1.9 bits;  conditional E-value: 3
                 HHHHHHHHHT- CS
        HEAT   1 llPlllkllsD 11 
                 l+P +lk+++ 
  KKY21510.1 496 LVPQILKWCTE 506
                 799****9965 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0      0.01        21      38      53 ..      92     107 ..      91     109 .. 0.86
   2 ?    5.1   0.0     0.016        32      34      54 ..     123     143 ..     110     144 .. 0.67
   3 ?    4.3   0.1     0.029        59      25      52 ..     153     180 ..     146     180 .. 0.85
   4 ?    0.5   0.0      0.47   9.3e+02      24      50 ..     277     298 ..     271     298 .. 0.84
   5 ?   -2.2   0.0       3.2   6.4e+03       7      55 .]     367     374 ..     364     395 .. 0.63
   6 ?   -0.3   0.0      0.83   1.6e+03      29      54 ..     422     448 ..     416     449 .. 0.77
   7 ?   -3.4   0.1       7.8   1.6e+04       3      13 ..     661     670 ..     660     682 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.01
     HEAT_EZ  38 nddsdeVRaaAagaLg 53 
                  d++++VRa A+++++
  KKY21510.1  92 DDPNPLVRALALRTIS 107
                 68899*********98 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.016
     HEAT_EZ  34 lalLnddsdeVRaaAagaLgn 54 
                  +l++d+++ VR+++a + ++
  KKY21510.1 123 KRLMSDPDPYVRKTSAFCVAK 143
                 344555555*******98766 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.029
     HEAT_EZ  25 lvpeilpaLlalLnddsdeVRaaAagaL 52 
                 +++++++ L ++L+d++++V a A+ aL
  KKY21510.1 153 EISDLIDRLNRMLKDENPTVIASALAAL 180
                 5889****************66666665 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.47
     HEAT_EZ  24 plvpeilpaLlalLnddsdeVRaaAag 50 
                 +l p ++ +L+     + +eV++ A++
  KKY21510.1 277 KLSPPLVTLLA-----KGPEVQYLALR 298
                 56788999999.....*******9986 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 3.2
     HEAT_EZ   7 AawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 A++a+G                                          l
  KKY21510.1 367 AVRAIGK-----------------------------------------L 374
                 5555555.........................................2 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 0.83
     HEAT_EZ  29 ilpaLlalLnd.dsdeVRaaAagaLgn 54 
                 i+   ++   d d++e +aa ++ +g+
  KKY21510.1 422 IITTVISNIDDlDEPEAKAAIIWIIGQ 448
                 555556666666999**********98 PP

  == domain 7  score: -3.4 bits;  conditional E-value: 7.8
     HEAT_EZ   3 vRraAawaLGr 13 
                 +++a+a++L +
  KKY21510.1 661 QQFANAMNL-N 670
                 578888888.3 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.039        78      13      33 ..     118     138 ..     111     140 .. 0.89
   2 ?    0.6   0.0      0.32   6.3e+02      14      36 ..     158     180 ..     152     180 .. 0.87
   3 ?   -0.7   0.1      0.85   1.7e+03      15      22 ..     280     287 ..     274     296 .. 0.81
   4 !    8.7   0.0   0.00092       1.8      13      40 ..     385     412 ..     380     413 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.039
                 HHHHHHHHTTTSSHHHHHHHH CS
         Arm  13 avppLvrLLssedeevqeeAa 33 
                  v+pL rL+s++d+ v++ +a
  KKY21510.1 118 TVQPLKRLMSDPDPYVRKTSA 138
                 599*************99875 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.32
                 HHHHHHHTTTSSHHHHHHHHHHH CS
         Arm  14 vppLvrLLssedeevqeeAawAL 36 
                 +++L r+L++e+++v   A++AL
  KKY21510.1 158 IDRLNRMLKDENPTVIASALAAL 180
                 6677799*************998 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.85
                 HHHHHHTT CS
         Arm  15 ppLvrLLs 22 
                 ppLv+LL 
  KKY21510.1 280 PPLVTLLA 287
                 9******8 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.00092
                 HHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  13 avppLvrLLssedeevqeeAawALsNLa 40 
                 +++ L++L + + + +++eA+  ++N+ 
  KKY21510.1 385 CIETLLDLVNAKIPYIVQEATVVIRNIF 412
                 79************************96 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00085       1.7     136     204 ..      60     145 ..      22     150 .. 0.65
   2 ?   -0.8   0.0      0.48   9.6e+02      98     157 ..     160     216 ..     147     248 .. 0.67
   3 !    4.7   0.1    0.0096        19      84     133 ..     374     421 ..     340     432 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00085
     CLASP_N 136 svalqdKnvqpReysaiwLkilltrfe.................shkskleasllldliekslkkgleDanptVRetaRstfweff 204
                  + +q  + +++ ++  +L ++ +  +                 ++ s+++ ++ +++ ++ lk++++D++p VR+t+  ++ +++
  KKY21510.1  60 ISCMQISSLEIKKMCFLYLVNYARLKPdiadmddpnplvralalRTISYVHVKEFVESTVQPLKRLMSDPDPYVRKTSAFCVAKLY 145
                 55555556666666666666666666566666666666666666667888888999999999*************99888777776 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.48
     CLASP_N  98 tLlkllgdtKkiisqnanqalaallsnasfsprilqvlsvalqdKnvqpReysaiwLkil 157
                  L ++l d    + ++a +al ++++  +    i   +  a+  K v++   +++w +++
  KKY21510.1 160 RLNRMLKDENPTVIASALAALMDIWERSE---SIKLTIDYASASKIVSIMPDCSEWSQTY 216
                 45555666666666667777777777666...5555666666666666666666665555 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0096
     CLASP_N  84 lkeqldpmveillptLlkllgdtKkiisqnanqalaallsnasfsprilq 133
                 l  ++++ +++ ++tLl+l+ ++   i q+a++++  ++++ +  ++  +
  KKY21510.1 374 LAIKIESAARQCIETLLDLVNAKIPYIVQEATVVIRNIFRKYP--NQYES 421
                 44469999********************************999..54433 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0016       3.2       6      75 ..      89     152 ..      85     192 .. 0.77
   2 ?    2.6   0.0     0.076   1.5e+02       6      71 ..     163     265 ..     158     280 .. 0.69
   3 ?   -0.9   0.0       0.9   1.8e+03       5      51 ..     390     432 ..     361     436 .. 0.63
   4 ?   -1.8   0.0       1.7   3.4e+03       4      53 ..     463     512 ..     460     513 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0016
     RTP1_C1   6 kdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeev 75 
                 +d+ dp + vra +l++++ +  k+       +e++++ l++ ++d+d+Yv   +  ++++L d +++ v
  KKY21510.1  89 ADMDDPNPLVRALALRTISYVHVKE------FVESTVQPLKRLMSDPDPYVRKTSAFCVAKLYDHDKRLV 152
                 6788999999999999998765555......589999999999999999999998888888888876655 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.076
     RTP1_C1   6 kdlqdpllpvrahglvlLrkliekkske.....................................avldiekilkllleaLkdedsYvYLnaikgLvaL 67 
                 + l+d+ + v a +l  L ++ e++++                                      ++ d++ +++ +   L++++s v L +++++  L
  KKY21510.1 163 RMLKDENPTVIASALAALMDIWERSESIkltidyasaskivsimpdcsewsqtyileammayvpqSTDDANLLAERIAPRLSHSNSAVVLTCVRVVLYL 261
                 568899999999999999999998876577787777777777777776666666666666666655555555566666677777777777777777766 PP

     RTP1_C1  68 advf 71 
                 ++++
  KKY21510.1 262 MNYI 265
                 6655 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.9
     RTP1_C1   5 lkdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkd 51 
                 l+ ++ +++ +  ++ v +r++++k       + e+i++++++++ d
  KKY21510.1 390 LDLVNAKIPYIVQEATVVIRNIFRKYP----NQYESIITTVISNIDD 432
                 444444555555555556666665553....5566666666666665 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.7
     RTP1_C1   4 alkdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkded 53 
                  l+  +d+ + v+   l+   kl+ ++ ++  + +++ilk + e   d+d
  KKY21510.1 463 YLATFHDESVEVQLALLTATVKLFIQRPTKGSSLVPQILKWCTEETDDPD 512
                 56677888888888888888899999988999999999999999888776 PP

>> N_Asn_amidohyd  Protein N-terminal asparagine amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.8   5.6e+03      85     118 ..      18      51 ..       4      60 .. 0.68
   2 ?   10.7   0.0    0.0001      0.21      63     125 ..     419     480 ..     416     494 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.8
  N_Asn_amidohyd  85 rlelhlvGGFederglseklsl.kllealqkqkee 118
                     rlel   GG +d+++ ++k++l k++++++ ++++
      KKY21510.1  18 RLELN-SGGKKDRNNSAKKIALkKIVANMTMSNND 51 
                     34443.48889999999998752577777766665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0001
  N_Asn_amidohyd  63 teegvaemlksvqelseeskegrlelhlvGGFederglseklslkllealqkqkeeihletlc 125
                     +e+ ++++++++ +l+e+++++ + + ++G + d+ + s +l  + l+++++++ e++l  l 
      KKY21510.1 419 YESIITTVISNIDDLDEPEAKAAI-IWIIGQYADRIDRSDDLLRDYLATFHDESVEVQLALLT 480
                     67789999******9999999888.99*****************************9997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.53
# Mc/sec: 4121.14
//
Query:       KKY21511.1  [L=296]
Description: putative hva22 domain membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-08   33.9   1.1    3.8e-08   33.1   1.1    1.4  1  TB2_DP1_HVA22  TB2/DP1, HVA22 family
  ------ inclusion threshold ------
      0.031   13.8   0.0       0.32   10.5   0.0    2.0  2  PET10          Petite colonies protein 10
       0.82   10.0   9.1         17    5.8   9.1    2.5  2  DUF3446        Early growth response N-terminal domain


Domain annotation for each model (and alignments):
>> TB2_DP1_HVA22  TB2/DP1, HVA22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   1.1   6.4e-12   3.8e-08      43      77 .]       2      36 ..       1      36 [. 0.96

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 6.4e-12
  TB2_DP1_HVA22 43 wiPfYylfKllfllwlvlpqtqgatyvYekflrpl 77
                   ++PfY++++ll+l ++vlpqtqga+++Y ++++p+
     KKY21511.1  2 VLPFYSWIRLLVLSYMVLPQTQGAKLLYSNYISPF 36
                   58*******************************97 PP

>> PET10  Petite colonies protein 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   5.4e-05      0.32     168     233 ..      29     114 ..      21     119 .. 0.88
   2 ?    0.9   0.1     0.043   2.6e+02     154     184 ..     182     210 ..     161     231 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.4e-05
       PET10 168 ksdyieptkdkalekydslvkPtadklq.......seyvdptkekin.............etYktvsetYesnLnksesvprAivs 233
                  s+yi+p  +   + ++ ++  +++++        ++++d ++ek+              +tY   +++Y +nL +  s+p+A v+
  KKY21511.1  29 YSNYISPFIERHEHDIEVFISDAHERAAsaglsymKKFIDLVREKVLglpppqaaqppppQTYGDAAAAYATNLLSRFSIPQARVA 114
                 57899999999999999999999999887777777888899999998***********************************9775 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.043
       PET10 154 stTkslskdlqskvksdyieptkdkalekyd 184
                 +t ks+  d++s++  + ++pt+ ++ ++++
  KKY21511.1 182 TTEKSIEADIESRM--QALDPTAAIVGNNLE 210
                 46689999999998..568888888877765 PP

>> DUF3446  Early growth response N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.083     5e+02      15      43 ..      61      89 ..      51     104 .. 0.60
   2 ?    5.8   9.1    0.0029        17       2      60 ..     105     159 ..     104     176 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.083
     DUF3446 15 lwaeellslvs.glvgvanppsspssssss 43
                ++ ++ + lv   ++g+ +pp+++ ++  +
  KKY21511.1 61 SYMKKFIDLVReKVLGL-PPPQAAQPPPPQ 89
                55666999999778899.444443333222 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0029
     DUF3446   2 kfsldpqtsgsnslwaeellslvsglvgvanppsspsssssssssssssssspslscsv 60 
                 +fs+  +  ++    + +l sl+s  ++     ++psss s+++ s+ s ssp    s 
  KKY21511.1 105 RFSIPQARVAAVPTAPSDLYSLLSSALSS----AAPSSSKSATTISPESLSSPAEKLSF 159
                 788866666667777788******65555....34555556666666666666654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1823.41
//
Query:       KKY21512.1  [L=319]
Description: hypothetical protein UCRPC4_g03616 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-75  253.6   0.0    3.4e-75  253.4   0.0    1.0  1  TANGO2    Transport and Golgi organisation 2


Domain annotation for each model (and alignments):
>> TANGO2  Transport and Golgi organisation 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.4   0.0   1.9e-79   3.4e-75       1     251 [.       1     295 [.       1     297 [. 0.92

  Alignments for each domain:
  == domain 1  score: 253.4 bits;  conditional E-value: 1.9e-79
      TANGO2   1 MCIllftveahpkykLiLasNRDEflaRptkeaaww.eenseilsgrDlerkegGTWlGitkegrlAvLtNlrepsekekkakkarsRGelvldfLtss 98 
                 MCI+l++ +ahp+y+LiL++NRDEfl+Rpt++a+ww ++ns++l+grDl r+++GTWl++t++gr+AvLtN+re++e    a +a+sRG +v++fLt+ 
  KKY21512.1   1 MCIALIS-TAHPSYSLILLDNRDEFLNRPTAPAEWWpSPNSHVLGGRDLLRDAQGTWLAVTRDGRIAVLTNFRENTE---VAVGAQSRGGMVKAFLTG- 94 
                 *******.****************************99************************************994...45899***********95. PP

      TANGO2  99 eksseeyleelak......eakkyggFnLlvgdlkskelayisnrskeeeel.sp.....gvhglSNsll.dspwpKveegkkkleelveesve.ekse 183
                 + + ++++ee+ak        +++ggF+L++g + + +la+isnr ++e+ + +      +++glSN+++ d++w+Kv  g+k+lee++e+s++  ++e
  KKY21512.1  95 SDTVKQTTEEFAKglvasgAPQSVGGFSLVCGRIGQ-PLAVISNRVTSEKGIsWIageraETVGLSNAAYgDRSWAKVVSGEKLLEEAIETSTKqGENE 192
                 889999999999999999999**************6.*********76677755599999**********999*****************999865667 PP

      TANGO2 184 eelieellellsddtllpkdeel.....eeleellssifippiee...............................akkeYGTrtqtvilvdkegkvtf 246
                 e++i++ l lls+dtl pk+++      +++++l+++if+p++ +                               +++ YGT++qtvilv+++g+v+f
  KKY21512.1 193 EQIIQRFLVLLSRDTL-PKEKNPedgleTHIDQLRNTIFVPTLGRrevqtkspeelraantkekakvvekvvpgdcMSGLYGTQKQTVILVKHDGRVRF 290
                 8899***********7.55333333668899**********99966899***************************99********************* PP

      TANGO2 247 iErtl 251
                 +Ertl
  KKY21512.1 291 FERTL 295
                 ***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 1960.71
//
Query:       KKY21513.1  [L=245]
Description: putative dna replication complex gins protein psf2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-29  103.0   0.0    2.2e-29  102.1   0.0    1.5  1  Sld5         GINS complex protein
  ------ inclusion threshold ------
      0.093   12.6   0.0       0.17   11.8   0.0    1.3  1  TFIIE_alpha  TFIIE alpha subunit


Domain annotation for each model (and alignments):
>> Sld5  GINS complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.0   2.5e-33   2.2e-29       3     108 ..      52     194 ..      50     195 .. 0.98

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 2.5e-33
                 EEHHHHHHHHHTTSCCCHHCHHHCHHHHHHCCCHHTTS....................................SSSTTTTTTHHHHHHHHHHHHT... CS
        Sld5   3 LPlWlaelLkrqrrveieppewlspesleailedetks....................................sdlpslpphflelavkllelard.. 63 
                 +PlWla+lLkrqrr++i+ p+wl+p+sl ++ + et++                                    +    lp+h+le+++ ll+ a+d  
  KKY21513.1  52 VPLWLALLLKRQRRANILAPPWLHPDSLGRLVNLETEKftesfapaprpsapstarshpsylpsapflnsatadAASDGLPYHWLEIGELLLDTAADdl 150
                 8************************************************************************988888*****************99* PP

                 ..HCHHHHHHHHHHHHHHHHHHHTHCHHHHHHHTS-TCCHCCS-HHH CS
        Sld5  64 ..ldelkrllrdllevRlakirkfaenledaagggggellsglseeE 108
                   +d ++rl+rdl+e R+ak+r ++e+l++++   +g+ l+g++++E
  KKY21513.1 151 vePDTVRRLMRDLREARMAKMRRGVEVLNGEG---EGVRLDGVGAME 194
                 ********************************...***********9 PP

>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.8e-05      0.17      39      64 ..     151     176 ..     143     186 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.8e-05
                  S-HHHHHHHHHHHHHCTSEEEEEEEE CS
  TFIIE_alpha  39 idlnelrklLnrLyearlvkykrrrd 64 
                  +++  +r+l+ +L+ear++k++r ++
   KKY21513.1 151 VEPDTVRRLMRDLREARMAKMRRGVE 176
                  68899******************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 1501.82
//
Query:       KKY21514.1  [L=306]
Description: putative alphaglucosyltransferase alg10 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-68  231.9   2.3    1.9e-68  231.6   2.3    1.1  1  DIE2_ALG10  DIE2/ALG10 family


Domain annotation for each model (and alignments):
>> DIE2_ALG10  DIE2/ALG10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.6   2.3   1.1e-72   1.9e-68     190     396 .]       7     242 ..       2     242 .. 0.89

  Alignments for each domain:
  == domain 1  score: 231.6 bits;  conditional E-value: 1.1e-72
  DIE2_ALG10 190 edllklllsllsslkkllkkllkilkkllpyllvlvlFaaFvvwNggivlGdksnHeatlhlpQllYfllfiaffslplllskll.......klkellk 281
                 +d+++++++l++++   l++l + l +l+py+ +lvlF  Fv+wNgg+vlGdk+nH+a+lhlpQ+lY++++iaffs+pll++ +l            l 
  KKY21514.1   7 RDIISFVVTLVTAT---LRDLPQALLRLVPYIGFLVLFGGFVFWNGGVVLGDKENHVASLHLPQMLYLWVYIAFFSWPLLVPYILdgagvtpY----LP 98 
                 56777777777766...78899***********************************************************988899855542....44 PP

  DIE2_ALG10 282 allklsllslll.....tllllllillivkkftivHpflLADNRHYtFYiwrrllkrhplikyllvpvYllslwlvlealaksks.............. 361
                 ++ +++ +++ l     + ll+++++++v+++tivHpf+LADNRHY+FY++r  l rhp ik ++vpvY++s+w++l+++ +sk+              
  KKY21514.1  99 EFFRHEGVKARLpgvilASLLCAVMVAAVQYNTIVHPFTLADNRHYVFYVFRI-LLRHPSIKIVAVPVYFFSAWATLASMGASKPevdaqpkgekeaag 196
                 4444444333334555588999*****************************98.7889**********************988889************* PP

  DIE2_ALG10 362 ...........vllvlalllatllslvpapLlEpRYfiiPyvllrl 396
                            +++vl++ll+ +lsl++apL+EpRYfiiP+v++rl
  KKY21514.1 197 qqategrdsfgLSFVLIWLLSSALSLITAPLVEPRYFIIPWVIWRL 242
                 ********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2184.37
//
Query:       KKY21515.1  [L=809]
Description: putative galactose-1-phosphate uridylyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-56  188.9   0.1    1.1e-55  187.9   0.1    1.5  1  GalP_UDP_tr_C    Galactose-1-phosphate uridyl transferase, C-
      2e-55  188.1   0.2    9.7e-55  185.8   0.1    2.0  2  GalP_UDP_transf  Galactose-1-phosphate uridyl transferase, N-
    1.9e-26   92.9  17.8    1.9e-26   92.9  17.8    2.0  3  FA_hydroxylase   Fatty acid hydroxylase superfamily
  ------ inclusion threshold ------
      0.091   13.5   0.0       0.19   12.5   0.0    1.6  1  HIT              HIT domain


Domain annotation for each model (and alignments):
>> GalP_UDP_tr_C  Galactose-1-phosphate uridyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.9   0.1   2.5e-59   1.1e-55       2     155 ..     293     450 ..     292     468 .. 0.95

  Alignments for each domain:
  == domain 1  score: 187.9 bits;  conditional E-value: 2.5e-59
                    HHHHHHHHHHH.SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEE.SS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS---E CS
  GalP_UDP_tr_C   2 ldsfekYfagsngsillhdyvqmelaekervvelkdsflavvpylakWPfevlllr.kaevkslaeladeekedlaailkklarkydnlfetsfey 96 
                    +++ +kY +++ gs++l dy+q+e+++ker v +++ f+av py+a+WP+e+++l+ k++++ l +l   e+  la ++ +++r+ydn fet+f+y
     KKY21515.1 293 IENLQKYRREQGGSHMLIDYAQLEVERKERDVFQNETFIAVCPYWAVWPYEIMILPhKRHIRALPDLEPSERLHLAEAIAEVTRRYDNVFETQFPY 388
                    67899**************************************************9899************************************* PP

                    EEEEE---SCCCTT...TT--EEEEE--BCSSTTEB----THHHHT-EEESS-HHHHHHHHH CS
  GalP_UDP_tr_C  97 smGlhqaplnaeed...nswlHaHfevpllrsatvrkieVGlelLperlrdllaEqaaerlr 155
                    smG+hqapl+++e+   +s lH Hf++pllrsa vrk++VG+e+++e++rd+++Eqaae+lr
     KKY21515.1 389 SMGIHQAPLEGTEQeieASSLHLHFYPPLLRSASVRKFLVGYEMMAEPQRDITPEQAAEKLR 450
                    ************99885556*****************************************9 PP

>> GalP_UDP_transf  Galactose-1-phosphate uridyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.8   0.1   2.2e-58   9.7e-55      33     184 .]     106     286 ..      88     286 .. 0.93
   2 ?   -0.6   0.0      0.34   1.5e+03       7      46 ..     369     408 ..     363     412 .. 0.84

  Alignments for each domain:
  == domain 1  score: 185.8 bits;  conditional E-value: 2.2e-58
  GalP_UDP_transf  33 r.pwqgqqekiskdtlpekDklkcyLcPgnsrangefnpkykstfvftndFpalsedsnyikteaiakn...ilfkaepayGrceviifsskhe 122
                      + ++ gqqe++s+++lpe+D ++cyLcPgn+ra g+ np+y++tfvf nd++a++ed+ ++k e+++++   +l+kae ++G+c+vi+fs++h+
       KKY21515.1 106 HgNIRGQQEAPSRTSLPEYD-VNCYLCPGNKRAAGDANPNYENTFVFVNDYSAVKEDQADYKSEEQSGSlssRLLKAEAVTGKCYVITFSPSHN 198
                      35899***************.9*****************************************9987778889********************* PP

  GalP_UDP_transf 123 ltladlspkdikavvaaWqektaelka..........................keypkcvlifENkGaamgvsnphPHgqiwaeehlp 184
                      ltladlsp +i +v+++W+e +++  a                          ++++++++ifENkGaamg+snphPHgqiw++  lp
       KKY21515.1 199 LTLADLSPPEILPVIDTWTEIYTAHLApssplskvaapthlppssstaskytpTHQYRYMQIFENKGAAMGCSNPHPHGQIWTTTGLP 286
                      **********************993335777778999**********************************************98776 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.34
  GalP_UDP_transf   7 daiyashrrfnpltgewvlvsphrtkrpwqgqqekiskdt 46 
                      +ai    rr++++++++   s  + + p++g +++i++++
       KKY21515.1 369 EAIAEVTRRYDNVFETQFPYSMGIHQAPLEGTEQEIEASS 408
                      55566789**************************998766 PP

>> FA_hydroxylase  Fatty acid hydroxylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       2.1   9.3e+03      71      96 ..     558     580 ..     535     617 .. 0.57
   2 ?   -3.3   0.1       2.4   1.1e+04      52      72 ..     611     632 ..     587     640 .. 0.54
   3 !   92.9  17.8   4.3e-30   1.9e-26       2     133 .]     653     789 ..     652     789 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.1
  FA_hydroxylase  71 alllvlvlaallelliHsglhvslgw 96 
                     +l+ +++  ++ e++ ++    s++w
      KKY21515.1 558 VLATGILSFTMHEIVYFAR---SVPW 580
                     3333333333333332222...3333 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.4
  FA_hydroxylase  52 allla.llllllllllgplsal 72 
                      +ll+ +++ l++++l ++ a 
      KKY21515.1 611 LVLLThFMVELPVIWLFHPMAQ 632
                     3333333333444444433333 PP

  == domain 3  score: 92.9 bits;  conditional E-value: 4.3e-30
  FA_hydroxylase   2 llallledfveYwvHrllHrvkllwrrlHkvHHsseaptalaalrahpleallla.llllllllllg.....plsalllvlvlaallelliHsgl 90 
                     ++++++ed ++Yw+Hr++H+ + l++++Hk+HH+++ap  laa++a+p+e+++l+  +++++++++      ++ +++ ++vl+ ++++  Hsg 
      KKY21515.1 653 AIFFVCEDAWHYWTHRAMHWGP-LYKNIHKIHHQYSAPFGLAAEYASPIEVMVLGiGTVIFPIIWVAitgnlHILTMYTWIVLRLFQAIDAHSG- 745
                     789****************865.*******************************9888888886666657555555666***************. PP

  FA_hydroxylase  91 hvslgwllerl...latpraHrlHHskneegnfgvllslwDrlfgT 133
                      ++l+w l+++    a++ +H++HH+k+  gn+++++++wD+++ T
      KKY21515.1 746 -YELPWSLHHFlpfWAGADHHDVHHEKFI-GNYASSFRWWDYCLDT 789
                     .899999955445469*************.************9987 PP

>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.3e-05      0.19       5      91 ..     320     412 ..     316     416 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.3e-05
                 -CCEEEE-SSEEEEE-SS-SSSSEEEEEESS.TGCSGGGCCHHHHHHHHHHHHHHHHHHHTCT.....TCCCEEEEEEESGGGT-SSSS-EEE CS
         HIT   5 pstvvyeddlvlafldidpkapghlLvipkk.hlselhdlteeelakllsavkkvakalqkkf.....knkglrvvinngahagqsvahlHiH 91 
                 +++ v++++ ++a+    + +p  + ++p k h++ l dl+++e+ +l +a+ +v +   ++f        g++ +  +g +   +   lH+H
  KKY21515.1 320 KERDVFQNETFIAVCPYWAVWPYEIMILPHKrHIRALPDLEPSERLHLAEAIAEVTRRYDNVFetqfpYSMGIHQAPLEGTEQEIEASSLHLH 412
                 566788999999999999999********999**************************99999555553345555555666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (809 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 5661.45
//
Query:       KKY21516.1  [L=378]
Description: putative f-box domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-05   24.8   0.6    3.1e-05   23.8   0.6    1.6  1  F-box-like  F-box-like
    0.00038   20.3   1.8    0.00083   19.2   1.8    1.6  1  F-box       F-box domain
      0.002   18.0   1.3     0.0033   17.3   0.6    1.7  2  F-box_4     F-box
  ------ inclusion threshold ------
      0.076   13.0   0.0       0.15   12.0   0.0    1.4  1  TetR_C_13   Tetracyclin repressor-like, C-terminal domain
       0.12   12.4   0.0       0.26   11.4   0.0    1.5  1  Imm71       Immunity protein 71


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.6   8.6e-09   3.1e-05       2      46 ..      10      52 ..       9      54 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 8.6e-09
  F-box-like  2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlv 46
                 +LP+EiL +I+s  + ++Ll+l  V+ + +++al+   L rr+v
  KKY21516.1 10 ESLPNEILTEILSSFSITSLLPLLTVSQSLHTLALR--VLHRRIV 52
                69***********88888****************65..6999986 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   1.8   2.3e-07   0.00083       2      37 ..       8      43 ..       7      51 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.3e-07
                HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHH CS
       F-box  2 tlsrLPsevlrhILerLplsdllalrrVSkgwrili 37
                +l +LP+e+l +IL++ + ++ll l  VS +++ l 
  KKY21516.1  8 PLESLPNEILTEILSSFSITSLLPLLTVSQSLHTLA 43
                7899***************************99875 PP

>> F-box_4  F-box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.6   9.1e-07    0.0033       4      48 ..       8      52 ..       5      59 .. 0.91
   2 ?   -2.7   0.0       1.5   5.4e+03       9      35 ..     159     185 ..     157     219 .. 0.55

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 9.1e-07
     F-box_4  4 sLssLPlevlqhiaslLDsfsLsqLslvskllrevcssllqergi 48
                 L+sLP e+l++i+s    +sL+ L  vs++l  ++ ++l++r +
  KKY21516.1  8 PLESLPNEILTEILSSFSITSLLPLLTVSQSLHTLALRVLHRRIV 52
                699*************************************98854 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.5
     F-box_4   9 PlevlqhiaslLDsfsL.sqLslvskll 35 
                 P e ++h+++ LDs  L sqL l s+l+
  KKY21516.1 159 PQEKVEHVVN-LDSDELfSQLCLSSSLV 185
                 5556666665.45544424555555543 PP

>> TetR_C_13  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.1e-05      0.15      47      91 ..     205     250 ..     182     265 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.1e-05
                 HHHHHHHHHHHHHHHHHHHCTTSS-TTS.-HHHHHHHHHHHHHHHH CS
   TetR_C_13  47 eevledwqkrvaacleeaqeageiaada.daeelaeffwigWeGAv 91 
                  +v  dw +r+a+ l++a+++g +++++ +ae + +++w  W   v
  KKY21516.1 205 IRVWRDWLQRQAESLNRAERRGLLDEEEgEAEMMNNILWVDWRHDV 250
                 57899*******************987626788899******8655 PP

>> Imm71  Immunity protein 71
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.1e-05      0.26      26      71 ..     204     249 ..     196     259 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.1e-05
       Imm71  26 ildlyrafldaterevrrapekgqleleaayandyvrilkgLahme 71 
                 ++ ++r++l+  +++++ra+++g l++e ++a+ +++il    +++
  KKY21516.1 204 VIRVWRDWLQRQAESLNRAERRGLLDEEEGEAEMMNNILWVDWRHD 249
                 7899****************************99999997655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2814.18
//
Query:       KKY21517.1  [L=1061]
Description: putative c6 finger domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-17   63.2  14.2    5.2e-15   55.1   0.5    4.0  4  Fungal_trans_2  Fungal specific transcription factor domain
  ------ inclusion threshold ------
       0.76    9.6   6.6        5.7    6.8   2.3    2.2  2  eIF3_subunit    Translation initiation factor eIF3 subunit


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.3   1.6       1.4   1.2e+04     356     376 ..     118     134 ..     117     138 .. 0.68
   2 !   55.1   0.5   5.8e-19   5.2e-15      14     130 ..     232     341 ..     203     360 .. 0.87
   3 !    9.9   0.0   3.3e-05       0.3     143     215 ..     432     501 ..     404     510 .. 0.85
   4 !    5.9   0.5   0.00052       4.7     308     342 ..     799     837 ..     616     861 .. 0.59

  Alignments for each domain:
  == domain 1  score: -5.3 bits;  conditional E-value: 1.4
  Fungal_trans_2 356 evWrrrddgeekidWrdvmek 376
                     +vW+++dd    +d +dvm +
      KKY21517.1 118 KVWEDEDD---PNDPWDVM-D 134
                     89*****6...55556677.4 PP

  == domain 2  score: 55.1 bits;  conditional E-value: 5.8e-19
  Fungal_trans_2  14 lspvpessnpfrkvllplalsnkallhallalsafhlqskgpkdslereakrykslalkelqealaelsstlsrnekykdiLaaiLllcsieiss 108
                     ++  p++++ +  +l  lal+n++l+ha+lalsa+h + +++ +     ++++   al+++ + +  ++++ +      ++Laa L+l ++e++ 
      KKY21517.1 232 QTLAPSQQSLWTYTLPMLALENPPLMHAILALSALHISKLQETS--IGPSTKHFHYALRRVAKLIGLPQRRNE-----IATLAANLVLGFYEVMC 319
                     456677799****************************7776666..7899999999*****************.....**************999 PP

  Fungal_trans_2 109 gdvsdwrvhLeaatsliksrgg 130
                      + s+w +hL++a  li+ +  
      KKY21517.1 320 AEHSKWTIHLQGASILIRENDF 341
                     9999*************98765 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 3.3e-05
  Fungal_trans_2 143 rfllrifayldilssttlgrgpsfpseeyekllenkkeesdsgldp.lmGcsnslilliseisrLarekrsark 215
                     + l  +++ +d+++s  +g+++++p+e ++    +    s++g ++  +G  ++lill++++++ +++ r+++ 
      KKY21517.1 432 SDLFWWYCKQDLFQSMVSGNQLLMPYEFWTTNPPR----SQFGRQDvPYGTFDHLILLMARLADWGAKDRKRKL 501
                     556679999**************************....999855549**************998887776665 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.00052
  Fungal_trans_2 308 aiasLl...WplFiaGceavdeddRdfvrrrleele.qs 342
                     + a L+   +plF a++   d+++R++  +rl++++  +
      KKY21517.1 799 LGAALMestFPLFFAAVQYIDPQQRSWTITRLRDIArCT 837
                     3444444449************************99444 PP

>> eIF3_subunit  Translation initiation factor eIF3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   2.3   0.00063       5.7      15      50 ..     111     146 ..      96     163 .. 0.68
   2 ?    4.6   0.1     0.003        27      70     124 ..     617     673 ..     589     696 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00063
  eIF3_subunit  15 akkpavaa....kWddEdededvkdswdaeeeeeeekeka 50 
                   +++    +     W+dEd+ +d  d  d++ +ee +k  a
    KKY21517.1 111 EAN----QpelkVWEDEDDPNDPWDVMDEDIDEELSKTVA 146
                   222....134559****98888888888777777655554 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.003
  eIF3_subunit  70 kqkiaeke....errkaeeeeaeeeeeleeedeaarkerlrkaeeesDlknaadlFGgv 124
                   + ++  ++    e+ ++ ++ea++ ++ +++  +   + +++++e + ++ a +lF++ 
    KKY21517.1 617 TSRLRYRRssdyEQ-NQSQTEATQTQQNAPKS-DLDNMTEQALQEHASIARAFELFASS 673
                   33333333333222.22222233333333332.35577788888888888888888854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1061 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       950  (0.0529868); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.23s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 7497.85
//
Query:       KKY21518.1  [L=234]
Description: hypothetical protein UCRPC4_g03622 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1598.73
//
Query:       KKY21519.1  [L=459]
Description: putative mfs transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-29  103.0  21.9    2.6e-28   99.0  10.2    2.1  2  MFS_1       Major Facilitator Superfamily
    4.1e-08   32.5   1.9    8.1e-08   31.5   1.9    1.5  1  Sugar_tr    Sugar (and other) transporter
     0.0089   14.5   0.4      0.013   14.0   0.4    1.2  1  TRI12       Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
       0.42    9.4  10.3         72    2.1  10.3    2.3  1  MFS_1_like  MFS_1 like family
        2.8    8.6   5.7       0.33   11.5   0.3    2.2  3  HEV_ORF1    Hepatitis E virus ORF-2 (Putative capsid protein)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0  10.2   7.2e-32   2.6e-28      50     344 ..       1     373 [.       1     375 [. 0.73
   2 !    9.4  10.3   0.00013      0.46      90     179 ..     336     425 ..     326     441 .. 0.80

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 7.2e-32
       MFS_1  50 lplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpk.eergraigllsagfslGailgpllggllass 147
                 +++G lsdr+Gr++vlllg +++ l+ll+  fa+++w+ l++rv+ G+   + + ++++++ ++++  e+ +ra++++   +s+G+i+gp++gg +a+ 
  KKY21519.1   1 MFWGGLSDRVGRKPVLLLGCVGTMLSLLIVGFATNYWVALAGRVIGGVLN-GNIGVIQTMVGELVTNpEHEPRAYSVMPFVWSIGTIIGPAIGGTFAQP 98 
                 59************************6666699****************5.77777788888777766**************************99987 PP

       MFS_1 148 lg................Wravfyilaivsllafvlfllll............peepperkrkspkeee.............................. 188
                 +                 + ++ +i+a+++l+++vl++++l            +                                             
  KKY21519.1  99 AEtfpdtfspagifgryqYLLPNLICAALMLISIVLGYAFLeethphfrsmqeT--------------Tkyidpkiavpeehtqvqinvtaggygtfnn 183
                 7799999999999999888888*************9888884444444333331..............2245666666666777778888888888888 PP

       MFS_1 189 ...........kgtgpaplvpawkallkdpvlw....illialllfffgfsg.lltllplylqevlgls..............glllaglllallalvg 257
                            + ++    +p   +  k++ ++    i+l+ +l+ f  +s+ +  llp++lq+  + +              + +++g++l+++++ +
  KKY21519.1 184 avsqnpesfgeEEQEVLDEKPTHVEAPKPR-IMtfqiIMLLLALGLFSYHSMcFDHLLPIFLQDSADETavnaanllppglgmTTFQVGTILSVSGISA 281
                 866555555552222222222112222222.2244532333333333333338********9999999999999999**999977************** PP

       MFS_1 258 ail.allagrlsdrlgrrrrlllallllllaalglallavt...ssavllllvlvliGfglgfvfpsllalasdlapp.eeagtasglfnta 344
                 +++ a+++  l+  +++ r l+l  ll  la++ + +la        + ++ +l +  f++ +++p+ll l+ + +p  ++ g+++gl+ ++
  KKY21519.1 282 LFIqAVVFPLLASYMPATRLLFLVTLLHPLAYIPMPFLAILpnkLIFPGIYTALGFRNFTSIIAYPLLLILLKQACPSsSMLGKINGLAASV 373
                 ***88888888899776666666666666666666666666443333334447777777888889999999999997546677777777655 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00013
       MFS_1  90 vlrvlqGlgagalfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpeepper 179
                  +r ++++    ++p+ ++l+ +  p  +  g+ +gl+++  ++   ++p+l+g+l+++++      ++++  a+v++++++   ++++++++++
  KKY21519.1 336 GFRNFTSII---AYPLLLILLKQACPSsSMLGKINGLAASVGAATRTVAPPLAGFLYAWGSdigfTGLAWWGSAVVAIIGALQ--IFFVQREKPS 425
                 455555554...5999***********9999************99************7777***877889**********884..5555555554 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   1.9   2.3e-11   8.1e-08      65     194 ..       2     142 ..       1     160 [. 0.82

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 2.3e-11
                 HHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
    Sugar_tr  65 fagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnk 163
                 f g l+dr+GRk++ll ++v ++ + ++ ++a+   +++v ++gRv+ G+  G + v+ +m    ++ +++  +  s+  + +++G +++  +g  +++
  KKY21519.1   2 FWGGLSDRVGRKPVLLLGCVGTMLSLLIVGFAT---NYWVALAGRVIGGVLNGNIGVIQTMVGELVTNPEHEPRAYSVMPFVWSIGTIIGPAIGGTFAQ 97 
                 66789****************************...9************************9999*************************999988866 PP

                 SS-.............TTHHHHHHHCCHHHHHHHHHHG.GGS--- CS
    Sugar_tr 164 tsn.............adgwrillglqlvpallllill.lflPES 194
                   +             + ++ ++  +++++ l+ ++l+  fl+E+
  KKY21519.1  98 PAEtfpdtfspagifgRYQYLLPNLICAALMLISIVLGyAFLEET 142
                 655566677776666666666666666666655554443566665 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.4   3.6e-06     0.013      98     162 ..       3      67 ..       1     100 [. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.6e-06
       TRI12  98 mgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpagasplfvgelmsnk 162
                  g l+dr+gr+p+++l  +  ++  ++   at++   la   + gv  g  g    +vgel++n 
  KKY21519.1   3 WGGLSDRVGRKPVLLLGCVGTMLSLLIVGFATNYWVALAGRVIGGVLNGNIGVIQTMVGELVTNP 67 
                 5889*********999998888887777788999999*************************995 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1  10.3      0.02        72     283     376 ..       6      98 ..       2     337 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.02
  MFS_1_like 283 lleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdl 376
                 l +++G   +l+++ + ++l +l++++ +n w++l   v+ g+  g + ++ + + + ++ +++e +  +++    +++G+ +G  iGG + + 
  KKY21519.1   6 LSDRVGRKPVLLLGCVGTMLSLLIVGFATNYWVALAGRVIGGVLNGNIGVIQTMVGELVTNPEHEPRAYSVMPF-VWSIGTIIGPAIGGTFAQP 98 
                 67899999999999999999999999999999999999999999999977777777777889999999998865.5999999999999987664 PP

>> HEV_ORF1  Hepatitis E virus ORF-2 (Putative capsid protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       3.4   1.2e+04      50      68 ..      84     102 ..      75     109 .. 0.71
   2 ?   11.5   0.3   9.2e-05      0.33       7      82 ..     225     304 ..     222     321 .. 0.86
   3 ?   -2.4   0.1       1.9   6.9e+03      30      95 ..     368     378 ..     352     387 .. 0.57

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.4
    HEV_ORF1  50 glilspsqspifiqptpsp 68 
                 g i+ p+    f qp+ + 
  KKY21519.1  84 GTIIGPAIGGTFAQPAETF 102
                 6677777777888877654 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 9.2e-05
    HEV_ORF1   7 alglfcccsscfclccprhrpvsrlaaavggaaavpavvsgvt...glilsps.qspifiqptpsppmsplrpgldlvfa 82 
                 alglf   s cf    p +   s   +av  a  +p  +   t   g ils s  s +fiq    p ++   p   l+f 
  KKY21519.1 225 ALGLFSYHSMCFDHLLPIFLQDSADETAVNAANLLPPGLGMTTfqvGTILSVSgISALFIQAVVFPLLASYMPATRLLFL 304
                 8*********************************997654433333999*9883599************99999998885 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.9
    HEV_ORF1  30 rlaaavggaaavpavvsgvtglilspsqspifiqptpsppmsplrpgldlvfanppdhsaplgvtr 95 
                  laa+vg a+                                                       r
  KKY21519.1 368 GLAASVGAAT-------------------------------------------------------R 378
                 4455555443.......................................................3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3753.22
//
Query:       KKY21520.1  [L=517]
Description: putative acetylacetyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-22   79.3   0.0      3e-22   78.3   0.0    1.5  1  TLP1_add_C  Thiolase-like protein type 1 additional C-termina


Domain annotation for each model (and alignments):
>> TLP1_add_C  Thiolase-like protein type 1 additional C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.0   1.7e-26     3e-22       1      80 [.     418     499 ..     418     502 .. 0.97

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 1.7e-26
  TLP1_add_C   1 plqeevdavpvpevveeaeGeatvEtyTvefnRdgePekgfvvgRltsdgaRfLAneadeetlealvsedve..GakvrVrq 80 
                 pl+++++   +p +++ a+G+a++EtyTvef+Rdg+P+   +vgRl+ +g+Rf+A ++d++tl +l+s+ +e  G+ ++Vr 
  KKY21520.1 418 PLPKTLTYDDAPVLEKRADGDAIIETYTVEFDRDGRPSSTLIVGRLKTNGHRFIASHGDDSTLVKLCSQVEEpiGQLGKVRP 499
                 89*******************************************************************99999****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.54
# Mc/sec: 2906.96
//
Query:       KKY21521.1  [L=88]
Description: hypothetical protein UCRPC4_g03625 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      104  (0.00580066); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.43
# Mc/sec: 615.13
//
Query:       KKY21522.1  [L=315]
Description: putative ga4 desaturase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.16   12.6   0.5       0.16   12.6   0.5    2.1  2  Lactococcin_972  Bacteriocin (Lactococcin_972)


Domain annotation for each model (and alignments):
>> Lactococcin_972  Bacteriocin (Lactococcin_972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   1.1      0.92   1.7e+04      30      51 ..       4      26 ..       2      32 .. 0.48
   2 ?   12.6   0.5   8.8e-06      0.16      18      32 ..     220     234 ..     214     245 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.92
  Lactococcin_972 30 tvvl.GkrtrkseaaaGkwskAs 51
                     t+++  ++t +++a + ++ +++
       KKY21522.1  4 TATTtTTTTTVTTASPSTTTNTT 26
                     55552333333344555555555 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 8.8e-06
  Lactococcin_972  18 snYyHgtkcHgstvv 32 
                      ++Y+H t+cHgs+v 
       KKY21522.1 220 AKYHHITRCHGSSVL 234
                      78***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 2004.77
//
Query:       KKY21523.1  [L=378]
Description: putative tachykinin family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-07   28.6   0.0    8.9e-07   28.1   0.0    1.3  1  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   4.9e-11   8.9e-07      36     355 ..       6     346 ..       1     348 [. 0.79

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 4.9e-11
  Fungal_trans_2  36 kallhallalsafhlqskgpkds..........lereakrykslalkelqealaelsstlsrnekykdiLaaiLllcsieissgdvsdwrvhLea 120
                     +a  + ++ l+a+h++s+ ++               ++++yk + l+elq+ l    ++++      + L+a   l+  ei  g++++ r h+++
      KKY21523.1   6 PAMIYGICGLAAAHQHSMRGRLNsgyvecesdiELLDILYYKGKILSELQRCLVGEVMCEP------SGLVAAVGLIAMEILCGNKEELRLHMQG 94 
                     788999*********66555544577777789866899***********************......8888889********************* PP

  Fungal_trans_2 121 atsliksrggskasssslsskarfllrifayldilssttlgrgpsfpseeyekllen...........kkeesdsgldplmGcsnslilliseis 204
                      ++l++ rgg       l+  a+    ++++  i +  t +  ps ps + e l  +           +k+  + ++     ++++l  li ++ 
      KKY21523.1  95 LEALLRVRGGW------LDVPANVSYVWLVSTYIAAVWTNSVPPSAPSLSPELLIHTeelkrrkapaiSKDMMSNYTKVGASLDPELQKLIVSVR 183
                     ***********......66666666666666666666555555777777766666667777788788777777777888**************** PP

  Fungal_trans_2 205 rLarekrsarkd....seleplsileeaseleqrllswkprssdlepdldeterasslskdltelfrlaaliylyrlvlglppsspevqelvkkl 295
                     +L   ++  + +    s +++++i ++  + e r+     +  ++ p +++++  +++s    ++  +++li+ +++ + l  ss ++++l k l
      KKY21523.1 184 DLIIYREICHAQpeplSAEQTEQITALRLNVEYRIMFRLFSHAPYIPGDPSDKIQTTRS---QKAVLASLLIFSLTSMMILKHSSAPIRNLAKVL 275
                     **9999888888889999999999999999*****955555577777777777777777...8889999999999******************** PP

  Fungal_trans_2 296 lellellpsspv.aiasLl....WplFiaGceavde.....ddRdfvrrrleele.qsrlgnvrrarqvle 355
                        l +++s+p  +  + l    W lF  +    d+       R ++ +r+++++   +l+  +++++ le
      KKY21523.1 276 KTNLPSMDSTPSaIFPPALeiilWTLFLGAHITLDSdddggGSRGWYISRINRVAeLLGLRRWETVKSALE 346
                     ********777753333334555*****9955555546788889999999998885555566666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2610.38
//
Query:       KKY21524.1  [L=162]
Description: putative abc bile acid [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-05   24.0   0.0    0.00022   21.8   0.0    1.9  2  ABC_tran  ABC transporter


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.2e-08   0.00022      27     126 ..       2     132 ..       1     136 [. 0.80
   2 ?   -0.5   0.0     0.089   1.6e+03     129     136 ..     150     157 ..     148     158 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.2e-08
                 HHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...........................HHHTCHHHHHHHSTTGG.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........................xxxxxxxxxxxxxxxxx.. RF
    ABC_tran  27 LlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...........................esdeeiekalsklglke.. 96 
                 L++ll +ll  + G+i +++ d+++   e l ++i  +pqep+l +++  r n                            sd  i  al+ +gl    
  KKY21524.1   2 LISLLFRLLPVKTGTIYINDVDISTVHQETLGQSIISIPQEPFLLSGT-GRFNaaphsasdsfnsdvnttthtdinilppPSDTLIISALTIVGLWSst 99 
                 8999********************************************.55556899999999887777776666666666666688888888888865 PP

                 .....TTCBGESTTS...GGS-HHHHHHHHHHHHHHHT CS
                 .....xxxxxxxxxx...xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  97 .....lkdtvvkssp...ssLSgGqkqrvalarallkk 126
                      +  +     p     L +Gq q  +lara++  
  KKY21524.1 100 ssrgiTLSS-----PissPRLFHGQEQLFCLARAIILS 132
                 444333333.....24558999************9865 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.089
                 EEEEESTT CS
                 xxxxxxxx RF
    ABC_tran 129 llllDEpt 136
                 +l+lDEpt
  KKY21524.1 150 FLVLDEPT 157
                 699****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 1027.45
//
Query:       KKY21525.1  [L=547]
Description: hypothetical protein UCRPC4_g03629 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       971  (0.0541581); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3801.39
//
Query:       KKY21526.1  [L=863]
Description: putative conserved serine-threonine rich protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0097   15.6   0.1      0.022   14.5   0.1    1.6  1  NETI      NETI protein
  ------ inclusion threshold ------
        2.2    8.5   9.2        2.4    8.3   3.5    2.6  2  CCDC50_N  Coiled-coil domain-containing protein 50  N-terminu


Domain annotation for each model (and alignments):
>> NETI  NETI protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   2.5e-06     0.022       7      42 ..     769     803 ..     766     817 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.5e-06
        NETI   7 neTIe.dcLeRmkkeGYmPvrRiEkPvFkevkkngkk 42 
                 n+T++ ++L+R k e + P+ R+E+PvF    +n++ 
  KKY21526.1 769 NNTVNdEVLQR-KTENFSPIIRREEPVFSGG-RNNER 803
                 66775157777.8899************995.45444 PP

>> CCDC50_N  Coiled-coil domain-containing protein 50  N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.5   0.00027       2.4      65     116 ..     427     480 ..     417     486 .. 0.76
   2 ?    4.4   6.7    0.0045        40      23     116 ..     444     545 ..     444     553 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00027
    CCDC50_N  65 akakallqkqkkeleeqDeeiAkeiqeellreaeerrrr..eeeDeeiAkrLqe 116
                 a  k+ + ++ + + eqD++iA+++q +    a e+r+r    +D ++A++L++
  KKY21526.1 427 ASSKVSMIETPEAMKEQDKAIARTLQMKQAAAAIEERERtvRFRDLKLARELKH 480
                 5667777888899**************99996555554411568999**99986 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0045
    CCDC50_N  23 DgaLAyrLQeqEieqhyatNvqknrlvq.kDlrvAkrlqe.eEd.....akakallqkq.kkel..eeqDeeiAkeiqeellr....eaeerrrreeeD 107
                 D+a+A +LQ +   q  a  ++++r+v+ +Dl++A++l++  Ed         ++++++ +k++  ++ D+eiA++   ++++     ae +r+   +D
  KKY21526.1 444 DKAIARTLQMK---QAAAAIEERERTVRfRDLKLARELKHlYEDhygpiS---IEHHQVpSKKIvhNHGDSEIAQAATLNMQQdiagTAESERTVRFRD 536
                 78899999955...4455555666666549*******9872577774431...4433331333322677*****9866666665555999999999*** PP

    CCDC50_N 108 eeiAkrLqe 116
                  +iA ++ +
  KKY21526.1 537 MKIAAKIRD 545
                 ****99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (863 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 6383.91
//
Query:       KKY21527.1  [L=503]
Description: putative chromosome segregation protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-33  114.2   0.2    5.6e-33  113.4   0.2    1.4  1  Csm1             Chromosome segregation protein Csm1/Pcs1
     0.0031   16.3   1.6     0.0031   16.3   1.6    2.1  2  AAA_13           AAA domain
     0.0032   17.3   6.6     0.0032   17.3   6.6    2.7  3  KASH_CCD         Coiled-coil region of CCDC155 or KASH
  ------ inclusion threshold ------
      0.011   16.2   9.4      0.011   16.2   9.4    2.2  2  APG6_N           Apg6 coiled-coil region
      0.025   14.8   5.0      0.072   13.3   5.0    1.8  1  CREPT            Cell-cycle alteration and expression-elevate
      0.051   11.7   6.9      0.085   11.0   6.9    1.2  1  EzrA             Septation ring formation regulator, EzrA
        0.2    9.6   3.4       0.31    9.0   3.4    1.3  1  Prominin         Prominin
       0.25   11.1   9.5       0.99    9.2   1.2    2.7  2  SKA2             Spindle and kinetochore-associated protein 2
       0.37   11.0   6.6       0.22   11.7   2.1    2.9  3  JIP_LZII         JNK-interacting protein  leucine zipper II
        1.7    8.6  13.6       0.11   12.5   7.3    2.0  2  Rootletin        Ciliary rootlet component, centrosome cohesi
        8.1    6.5  22.6      0.087   12.9  10.4    2.8  2  ADIP             Afadin- and alpha -actinin-Binding
        9.1    5.6  11.9      0.069   12.5   1.7    2.1  2  Phlebovirus_NSM  Phlebovirus nonstructural protein NS-M


Domain annotation for each model (and alignments):
>> Csm1  Chromosome segregation protein Csm1/Pcs1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.2   3.7e-36   5.6e-33       1      84 []     394     484 ..     394     484 .. 0.98

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 3.7e-36
        Csm1   1 qlkedlyedLtGlivrsvkedesedvfdciqtgrngtlhfkLaisk.......efeeaeisYvPlldesrdkellelLPdYLveeitFprn 84 
                 qlkedly+dLtGli r+vk++e+ed+fdciqtgrngtlhfkL++++       +fee+e+ Y+Plld++rd+ l+elLPdYL+e+itF r+
  KKY21527.1 394 QLKEDLYSDLTGLILRGVKRTEDEDTFDCIQTGRNGTLHFKLIVAHddngkttSFEETEFLYMPLLDSNRDRGLIELLPDYLTEDITFSRQ 484
                 79******************************************999*****************************************985 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.8  10.6       4.7   7.1e+03     107     199 ..      57     144 ..      39     189 .. 0.45
   2 !   16.3   1.6   2.1e-06    0.0031     343     463 ..     237     358 ..     201     367 .. 0.74

  Alignments for each domain:
  == domain 1  score: -4.8 bits;  conditional E-value: 4.7
      AAA_13 107 kleekleaaeaqlqkaekekkklekeledeawkkivkkknsalsealkglky.eekfkerllkelkkknrkaaellsdeelkakletvesenlp 199
                 k  ++ +++   ++ a+k+   + k le+++ +++      a ++++ g ++ +++++  + +++ ++ ++ +++++++++k+ +++  ++++ 
  KKY21527.1  57 KTATSKKETGGAAKRARKTAAPKRKALEEQVNEQL-----RATDTSHAGKAKtNATQDTVMSEDVSSD-DELDSPKTLAQEKKTADARPKDQRV 144
                 22222222222222222222222333333333333.....2333333333331444444444455554.5666666666666665555444332 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 2.1e-06
      AAA_13 343 aleaKrkepfksvelesvkakiesikklvaeineliakhNekvanleeekeeakkklelhlv..eeleseldeykkkykklekaieklekelkeeeael 439
                 +l +K  ++ +++e  ++k +  + +  + e+n+++ k  ++ +    + +e+  +l++ l+   ++ +e+ +++k++++ +++ +kl  +++e ++ l
  KKY21527.1 237 QLRRKLGDMTRKFESIELKYRNLR-ETGIVEANANVDKLKKQCEATSLASNELVASLKKELAmqTSMAQEYRKLQKAMQARDAENSKLLSNISELTSSL 334
                 566666666665554444443332.33456677777777777777777777777777666643366778888889999999999999999999999999 PP

      AAA_13 440 kkleeeikeLekqlrdekpaaeei 463
                  ++++e+k+L+++l   +  a+ +
  KKY21527.1 335 SAAQNEVKALQAKLAAARTVATTV 358
                 999999999999998887777766 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.2       1.4   2.1e+03      35      78 ..      85     131 ..      71     147 .. 0.55
   2 ?    1.5   0.5      0.15   2.3e+02     147     182 ..     258     293 ..     236     302 .. 0.72
   3 !   17.3   6.6   2.2e-06    0.0032       3      80 ..     285     359 ..     283     366 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.4
    KASH_CCD  35 eetnakLtee..ieeLkkklkstQqalqkak.lleeEleelkalvke 78 
                 e  n++L +    ++ k k   tQ +++++  + ++El+  k+l++e
  KKY21527.1  85 EQVNEQLRATdtSHAGKAKTNATQDTVMSEDvSSDDELDSPKTLAQE 131
                 33344444330033345555566666666551345566666666555 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.15
    KASH_CCD 147 aekealleektkqieeLkltieEyssiieeLraeks 182
                 + +e+ ++e ++++++Lk + e  s + +eL a  +
  KKY21527.1 258 NLRETGIVEANANVDKLKKQCEATSLASNELVASLK 293
                 568888899999999999888888888888766544 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 2.2e-06
    KASH_CCD   3 tsdlistvadLqlnNkkLaeenskLkkavetaeetnakLteeieeLkkklkstQqalqkaklleeEleelkalvkele 80 
                 +++l+++++   +   ++a+e++kL+ka+++ + +n+kL  +i+eL   l   Q      k+l+  l+ ++++++++e
  KKY21527.1 285 SNELVASLKKELAMQTSMAQEYRKLQKAMQARDAENSKLLSNISELTSSLSAAQNE---VKALQAKLAAARTVATTVE 359
                 67888888876667789*******************************99999975...5778888888887777666 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.7       1.8   2.7e+03      73      76 ..      83      86 ..      24     140 .. 0.62
   2 ?   16.2   9.4   7.5e-06     0.011      31     130 ..     255     352 ..     235     354 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.8
      APG6_N 73 leke 76
                le++
  KKY21527.1 83 LEEQ 86
                2211 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 7.5e-06
      APG6_N  31 flkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaqyeha 129
                   ++l+++   e   + ++++l+++ e+++ + +el++ Lk+  + + ++++e ++l++  +a+++e+ + ++  +el   l+  ++e ++l+a+++ a
  KKY21527.1 255 KYRNLRETGIVE--ANANVDKLKKQCEATSLASNELVASLKKELAMQTSMAQEYRKLQKAMQARDAENSKLLSNISELTSSLSAAQNEVKALQAKLAAA 351
                 445555443332..468999***************************************************************************9877 PP

      APG6_N 130 q 130
                 +
  KKY21527.1 352 R 352
                 5 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   5.0   4.8e-05     0.072      40     118 ..     265     343 ..     233     362 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.8e-05
       CREPT  40 ikdkeeaekllkqveealellaeYnkrLeaeleeRkklakmledfleaqkellakaeekleelkeklekvksvrkelks 118
                 ++ +++ +kl kq e    + +e +++L++el + +++a+  +++++a++++ a++ + l+++ e  + ++++++e+k 
  KKY21527.1 265 VEANANVDKLKKQCEATSLASNELVASLKKELAMQTSMAQEYRKLQKAMQARDAENSKLLSNISELTSSLSAAQNEVKA 343
                 566788899*******************************************************************986 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   6.9   5.7e-05     0.085     309     427 ..     236     352 ..     227     357 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.7e-05
                 SSSSHHHHT--HHHHTTGGG-TTTS-GGGSSTTTSTTHHHHHHHHHHHHHHHHHHHHHHS-SS---STTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        EzrA 309 kelkeklehlekqnkelkeeldrlkqsYeLseeeleklrelekelkelekdyeeleekleekkvaYSelqeeleeleekleeieekqeeileslkslrk 407
                 ++l++kl  ++++++ ++ ++++l+++     e   ++++l+k+ +  +   +el+  l+++ +  +++++e+++l++ +++ + +  ++l ++++l +
  KKY21527.1 236 PQLRRKLGDMTRKFESIELKYRNLRETGIV--EANANVDKLKKQCEATSLASNELVASLKKELAMQTSMAQEYRKLQKAMQARDAENSKLLSNISELTS 332
                 678889999999999999999999999888..6668999************************************************************ PP

                 HHHHHHHHHHHHHHHHHHHH CS
        EzrA 408 dEkrAreqldeikkelkeik 427
                 + + A+++++ ++ +l  ++
  KKY21527.1 333 SLSAAQNEVKALQAKLAAAR 352
                 ************99998765 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.4    0.0002      0.31     657     711 ..     288     344 ..     237     360 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0002
    Prominin 657 dlraiqqelvlp..lessvkklkksvkkldeensdlqesikkllaaveraenflkkn 711
                  + ++++el+ +  + ++++kl+k +++ d+ens+l ++i++l++++++a+n++k+ 
  KKY21527.1 288 LVASLKKELAMQtsMAQEYRKLQKAMQARDAENSKLLSNISELTSSLSAAQNEVKAL 344
                 3445555544433499999*********************************99875 PP

>> SKA2  Spindle and kinetochore-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   4.7     0.013        19      52      97 ..     269     314 ..     263     321 .. 0.79
   2 ?    9.2   1.2   0.00066      0.99      23      61 ..     307     348 ..     306     362 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.013
        SKA2  52 eelqaLkeqceellaekkelidkirttlvanrellqqLqasaelpp 97 
                 + + +Lk+qce+ + +  el+ ++++ l+ ++++ q+ ++  ++ +
  KKY21527.1 269 ANVDKLKKQCEATSLASNELVASLKKELAMQTSMAQEYRKLQKAMQ 314
                 67899*****************************997554443333 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00066
        SKA2  23 hrLekefqqsypdna...eNpvkLlerlkkvkeelqaLkeqc 61 
                 ++L+k +q+  ++n     N  +L ++l++ ++e++aL++++
  KKY21527.1 307 RKLQKAMQARDAENSkllSNISELTSSLSAAQNEVKALQAKL 348
                 689999999999998777777777777777777777777765 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       7.2   1.1e+04      40      51 ..      22      33 ..      17      39 .. 0.75
   2 ?   -0.2   0.1      0.77   1.2e+03       3      21 ..     245     263 ..     244     306 .. 0.71
   3 ?   11.7   2.1   0.00014      0.22      10      68 ..     302     360 ..     292     362 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 7.2
    JIP_LZII 40 sereiLreEles 51
                 e+++L+ E es
  KKY21527.1 22 DENTMLSIERES 33
                578888888877 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.77
    JIP_LZII   3 mgkevenLikENteLletk 21 
                 m++++e++   + +L+et 
  KKY21527.1 245 MTRKFESIELKYRNLRETG 263
                 7788888888888888874 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00014
    JIP_LZII  10 LikENteLletknaLnvvkddLIarvdeLtsereiLreEleslqkakerlesrikelEe 68 
                 + +E+ +L++   a +     L++ + eLts  ++ ++E+++lq+ +++ ++  + +E 
  KKY21527.1 302 MAQEYRKLQKAMQARDAENSKLLSNISELTSSLSAAQNEVKALQAKLAAARTVATTVES 360
                 678******************************************99999888777775 PP

>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.4       1.3   1.9e+03      33      44 ..      81      97 ..      47     148 .. 0.59
   2 ?   12.5   7.3   7.2e-05      0.11      21     133 ..     238     349 ..     236     363 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.3
   Rootletin 33 seleqrlle.....kts 44
                + le++++e     +ts
  KKY21527.1 81 KALEEQVNEqlratDTS 97
                34555555533333222 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 7.2e-05
   Rootletin  21 LqaKvlqYkkrcseleqrllektselektkltlll....ssareleeeesadleealakLeeErqrseklaqvnslLreqleearqaneaLtedlqklt 115
                 L++K+ +  ++++++e +  +    l++t + + +    + ++++e ++    +e++a L+ E    +++aq+   L++ +++ +++n +L +++  lt
  KKY21527.1 238 LRRKLGDMTRKFESIELKYRN----LRETGIVEANanvdKLKKQCEATS-LASNELVASLKKELAMQTSMAQEYRKLQKAMQARDAENSKLLSNISELT 331
                 777888888888887766666....222222222221213333444444.4447********************************************* PP

   Rootletin 116 kdwerlreeleqkekewr 133
                 + ++ +++e++  ++++ 
  KKY21527.1 332 SSLSAAQNEVKALQAKLA 349
                 *********998777665 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   4.0       1.4   2.2e+03      76     130 ..      80     134 ..      56     146 .. 0.82
   2 ?   12.9  10.4   5.8e-05     0.087      29     108 ..     273     352 ..     245     362 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.4
        ADIP  76 ierlktqleqlerelalvqakerqlekklktleqklknekeelqrlknalqqikt 130
                  + l++q+ ++ r +++++a ++++++++ t  +   +  +el   k+ +q+ kt
  KKY21527.1  80 RKALEEQVNEQLRATDTSHAGKAKTNATQDTVMSEDVSSDDELDSPKTLAQEKKT 134
                 4679999999999999999999999999999888888888888877777777776 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 5.8e-05
        ADIP  29 kveeniaaiinviysLlqardrdleqreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktle 108
                 k++++ +a+    ++L+++++++l++++s++++ rkl+  ++   ++ ++l  + ++l++ l+++q++ + l++kl+++ 
  KKY21527.1 273 KLKKQCEATSLASNELVASLKKELAMQTSMAQEYRKLQKAMQARDAENSKLLSNISELTSSLSAAQNEVKALQAKLAAAR 352
                 55666667777779*********************999888888888888888888888888888888888888877654 PP

>> Phlebovirus_NSM  Phlebovirus nonstructural protein NS-M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   2.9       1.4   2.1e+03     142     216 ..      13      89 ..       6     134 .. 0.67
   2 ?   12.5   1.7   4.6e-05     0.069     191     251 ..     300     360 ..     244     369 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.4
  Phlebovirus_NSM 142 dyeklkkkaeekdk.tisrktkesEe....diknqvlhseieqlknelqkkRndikrgqekrdakklveesmArvkdlke 216
                      d e +   a+e     i+r++  +E       +++v ++++ + k   +kk  +   g  kr  k      +A  +++ e
       KKY21527.1  13 DMEDISTVADENTMlSIERESASPEPakgkAGRTKVSKNRVTKPKTATSKKETG---GAAKRARKTAAPKRKALEEQVNE 89 
                      677777788776642578888888877777778999999999999999999888...55555444444444444443333 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 4.6e-05
  Phlebovirus_NSM 191 ikrgqekrdakklveesmArvkdlkeelkiltdelsqikseiqilrkkikdfetvvpAlls 251
                         +qe r  +k ++  +A ++ l  +   lt  ls +++e++ l+ k     tv   + s
       KKY21527.1 300 TSMAQEYRKLQKAMQARDAENSKLLSNISELTSSLSAAQNEVKALQAKLAAARTVATTVES 360
                      4458***********************************************9999877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2181  (0.121646); expected 358.6 (0.02)
Passed bias filter:                      625  (0.0348597); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.03u 0.39s 00:00:01.42 Elapsed: 00:00:00.57
# Mc/sec: 2661.38
//
Query:       KKY21528.1  [L=384]
Description: putative membrane-spanning [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-38  130.4   0.0    1.7e-37  128.8   0.0    1.8  2  AAA              ATPase family associated with various cellul
    2.2e-09   37.0   0.0    4.5e-09   36.0   0.0    1.5  1  AAA_lid_3        AAA+ lid domain
      4e-06   27.3   0.6    0.00029   21.3   0.0    2.6  2  AAA_16           AAA ATPase domain
      7e-06   26.1   0.0    1.8e-05   24.8   0.0    1.7  1  AAA_14           AAA domain
    1.4e-05   24.9   0.0    2.6e-05   24.0   0.0    1.5  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    2.2e-05   24.5   0.1    0.00019   21.5   0.1    2.5  1  AAA_5            AAA domain (dynein-related subfamily)
    2.4e-05   24.5   0.0    4.6e-05   23.6   0.0    1.4  1  AAA_2            AAA domain (Cdc48 subfamily)
    0.00016   21.9   0.5     0.0047   17.2   0.0    2.7  3  AAA_22           AAA domain
    0.00025   21.4   0.0    0.00056   20.3   0.0    1.7  1  RNA_helicase     RNA helicase
    0.00058   19.3   0.1       0.58    9.5   0.0    2.5  2  TniB             Bacterial TniB protein
    0.00065   19.5   0.0     0.0015   18.3   0.0    1.6  1  IstB_IS21        IstB-like ATP binding protein
    0.00082   18.8   0.2     0.0015   18.0   0.2    1.3  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
    0.00093   19.4   0.0     0.0017   18.6   0.0    1.5  1  AAA_33           AAA domain
    0.00095   18.8   0.3      0.035   13.7   0.2    2.4  2  AAA_25           AAA domain
     0.0013   18.7   0.1      0.013   15.4   0.0    2.3  2  NACHT            NACHT domain
     0.0017   18.9   0.0     0.0039   17.7   0.0    1.7  1  AAA_18           AAA domain
     0.0073   16.6   0.0      0.013   15.7   0.0    1.5  1  AAA_28           AAA domain
     0.0086   15.8   0.0      0.015   15.0   0.0    1.3  1  AAA_24           AAA domain
     0.0097   15.8   0.1      0.028   14.3   0.0    1.6  2  Rad17            Rad17 P-loop domain
     0.0099   16.0   0.0      0.024   14.8   0.0    1.6  1  Sigma54_activ_2  Sigma-54 interaction domain
  ------ inclusion threshold ------
      0.012   16.1   0.0      0.031   14.8   0.0    1.6  1  ABC_tran         ABC transporter
      0.023   13.9   0.0      0.044   12.9   0.0    1.4  1  DUF815           Protein of unknown function (DUF815)
      0.024   13.7   0.0      0.034   13.2   0.0    1.2  1  Parvo_NS1        Parvovirus non-structural protein NS1
       0.03   13.9   0.0      0.063   12.8   0.0    1.5  1  AAA_7            P-loop containing dynein motor region
      0.036   14.0   0.0       0.21   11.5   0.0    2.1  2  ATPase_2         ATPase domain predominantly from Archaea
       0.04   14.3   0.1       0.11   13.0   0.1    1.7  1  AAA_17           AAA domain
      0.042   13.6   0.0      0.083   12.6   0.0    1.4  1  Sigma54_activat  Sigma-54 interaction domain
      0.048   13.7   0.0      0.084   12.9   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.053   13.2   0.1       0.54    9.9   0.0    2.5  3  Guanylate_kin    Guanylate kinase
      0.053   13.7   0.0       0.12   12.5   0.0    1.5  1  YqaJ             YqaJ-like viral recombinase domain
      0.088   12.0   0.0       0.18   11.0   0.0    1.5  1  TIP49            TIP49 P-loop domain
       0.11   11.8   0.0       0.19   11.0   0.0    1.3  1  Zeta_toxin       Zeta toxin
       0.13   12.1   0.1         11    5.7   0.0    2.4  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
       0.15   11.8   0.0       0.24   11.1   0.0    1.3  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       8.1   4.3e+03      77     101 ..      26      50 ..      19      54 .. 0.82
   2 !  128.8   0.0   3.2e-40   1.7e-37       1     131 [.     124     257 ..     124     258 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 8.1
                 CCCHHHHHHHHHHHHHHHHTTTSSS CS
         AAA  77 seseeeervvnqLlteldgvkkkes 101
                 +++ee++r  +++l+ ld  k++++
  KKY21528.1  26 KQKEEARRKSAAILRRLDPPKNEDN 50 
                 5678999999999999999999766 PP

  == domain 2  score: 128.8 bits;  conditional E-value: 3.2e-40
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 vllyGppG+GKT+laka+a+e+g++f+++  s+l++k+ g+s+k ++++f+ a++ + p+i+fiDEida+ ++r++se+e +  v ++++t++dg+++ 
  KKY21528.1 124 VLLYGPPGCGKTMLAKALAHESGATFINLHISTLTEKWYGDSNKLVNAVFSLARKLQ-PTIVFIDEIDAVLGTRRSSEHEASGMVKAEFMTHWDGLTSA 221
                 79******************************************************9.****************99*********************** PP

                 .....SSTEEEEEEESSGGGSTHHHHSTTSSEEEETT CS
         AAA 100 .....eskvivigatnrpdkldpallrgRfdrkieie 131
                       ++++v+gatnr++++d+a+l +R+ +k+ ++
  KKY21528.1 222 nslgqPQRIMVLGATNRIQDIDDAIL-RRMPKKFPVP 257
                 9***9788******************.7****99887 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   8.5e-12   4.5e-09       1      36 [.     281     316 ..     281     331 .. 0.91

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 8.5e-12
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgik 36 
                 ++dl+ +++ T+G+SG Dl++ cr Aa++ +r+ i 
  KKY21528.1 281 NFDLSYIVKITAGMSGSDLKEACRDAAMVPVREMIR 316
                 68******************************9664 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   5.5e-07   0.00029      22      56 ..     119     150 ..     110     162 .. 0.79
   2 ?    3.5   0.0      0.16        84     123     146 ..     168     191 ..     162     204 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 5.5e-07
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdggifl 56 
                   p+ vll+G++G+GK+ l+++l+++     + f+
  KKY21528.1 119 AAPSGVLLYGPPGCGKTMLAKALAHESG---ATFI 150
                 56799******************97444...3354 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.16
      AAA_16 123 lkrll.allsrderplvlvlDdlqw 146
                 l +++ +l+++  +p+++++D+++ 
  KKY21528.1 168 LVNAVfSLARK-LQPTIVFIDEIDA 191
                 44555488888.667*******994 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   3.4e-08   1.8e-05       5      78 ..     124     194 ..     121     238 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 3.4e-08
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpe 78 
                 +++ G+  +GKT+l+k l++e+      ++ + + + ++k + d++kl +++++++++ + t++f+DEi  v +
  KKY21528.1 124 VLLYGPPGCGKTMLAKALAHESG---ATFINLHISTLTEKWYGDSNKLVNAVFSLARKLQPTIVFIDEIDAVLG 194
                 6899***************9999...88888888888888888999999999999777799********98844 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0     5e-08   2.6e-05      34      96 ..     122     192 ..     109     251 .. 0.70

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 5e-08
      RuvB_N  34 dhvllyGpPGlGkttlakiiakelgvklkitsgPvl.ek....agdlaalltnleek...dvlfideihrl 96 
                   vllyGpPG Gkt lak +a+e g+++      +l ek    ++ l+  + +l +k    ++fidei  +
  KKY21528.1 122 SGVLLYGPPGCGKTMLAKALAHESGATFINLHISTLtEKwygdSNKLVNAVFSLARKlqpTIVFIDEIDAV 192
                 579********************998764433333313321114456555555543322279999999765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   3.5e-07   0.00019       1      75 [.     123     190 ..     123     250 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3.5e-07
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.G-SEEEEESGG CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.egeilvlDEve 75 
                 +vlL GppG+gK++la+ la+  ++++  ++l+ +t +e+  g  +      +lv+ ++  a + ++ i+++DE++
  KKY21528.1 123 GVLLYGPPGCGKTMLAKALAHESGATF--INLHISTLTEKWYGDSN------KLVNAVFSLARKlQPTIVFIDEID 190
                 59******************9766554..55555444444333333......566666664444777777777776 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   8.8e-08   4.6e-05       6      91 ..     124     204 ..     120     207 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 8.8e-08
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG----.-------- CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpk.essgadvS 91 
                 +ll gp g+Gkt+lakala    +    ++i +  s+l+e  +     ++l+ a     ++ +  iv++DEid +  + +ss+++ S
  KKY21528.1 124 VLLYGPPGCGKTMLAKALAHESGA----TFINLHISTLTE--KWYGDSNKLVNAVFSLARKLQPTIVFIDEIDAVLGTrRSSEHEAS 204
                 6899****************9996....************..4444456666666777888999*********99887666666666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       6.9   3.7e+03      58      95 ..      36      70 ..      23      75 .. 0.67
   2 !   17.2   0.0     9e-06    0.0047       8      29 ..     124     145 ..     120     172 .. 0.81
   3 ?    1.5   0.0      0.64   3.4e+02      74     103 ..     164     193 ..     153     208 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 6.9
      AAA_22 58 rellralglelkaerlsseellealeqalraraviell 95
                 ++lr l+ ++++  +++ +  ++ e+ + +++  +++
  KKY21528.1 36 AAILRRLDPPKNE--DNNARHGSRKEDLVLTQYE-QAI 70
                5788888888888..6666666666666666665.555 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 9e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleql 29 
                 ++++G++G+GKT+l++ l+++ 
  KKY21528.1 124 VLLYGPPGCGKTMLAKALAHES 145
                 589***************9986 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.64
      AAA_22  74 sseellealeqalraravielliiDEaqh.l 103
                 +s  l++a+   +r+ +   ++ iDE++  l
  KKY21528.1 164 DSNKLVNAVFSLARKLQP-TIVFIDEIDAvL 193
                 566777788888888888.9********944 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.1e-06   0.00056       1      78 [.     124     208 ..     124     236 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.1e-06
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl.....klkkkdsvys.rnpeddfwdgYt...gqevvvidDfgqvkdeenpsdlaelirlvs 78 
                   ++lyGp+g+GK++lak La++   ++      + + +++y   n+  + + +     ++++v id++ +v  +   s ++e  ++v+
    KKY21528.1 124 VLLYGPPGCGKTMLAKALAHESGATFinlhiSTLT-EKWYGdSNKLVNAVFSLArklQPTIVFIDEIDAVLGT-RRSSEHEASGMVK 208
                   689*****************999777676654444.4444446666555544443667788888888887755.4556666666664 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0066       3.5      36      58 ..     122     144 ..     118     153 .. 0.84
   2 !    9.5   0.0    0.0011      0.58     104     147 ..     165     208 ..     152     210 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0066
        TniB  36 pnlllvGdsnnGKtmivekFarl 58 
                 + +ll+G++ +GKtm+++  a++
  KKY21528.1 122 SGVLLYGPPGCGKTMLAKALAHE 144
                 579*************9987765 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0011
        TniB 104 vskleqqvlrllrelkvrvLiiDEihnllagsarkqreflnalk 147
                  +kl ++v +l r+l++ ++ iDEi+ +l  ++++ +e+  ++k
  KKY21528.1 165 SNKLVNAVFSLARKLQPTIVFIDEIDAVLGTRRSSEHEASGMVK 208
                 56888999*********************888888888777776 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.9e-06    0.0015      44      71 ..     118     145 ..     109     211 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.9e-06
   IstB_IS21  44 iekkenivllGpsGvGKshlaialgvea 71 
                 +++  +++l Gp+G GK+ la al++e 
  KKY21528.1 118 MAAPSGVLLYGPPGCGKTMLAKALAHES 145
                 5667889******************985 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.2   2.8e-06    0.0015      25      43 ..     124     142 ..     116     145 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.8e-06
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +ll+GppG+GKtmlak+l+
    KKY21528.1 124 VLLYGPPGCGKTMLAKALA 142
                   89**************986 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.1e-06    0.0017       2      33 ..     124     157 ..     124     238 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.1e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdt..l 33 
                 vll G+pG+GK+ la+ l+ + ga++++  +  l
  KKY21528.1 124 VLLYGPPGCGKTMLAKALAHESGATFINLHIstL 157
                 7899*******************88887665442 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2   6.6e-05     0.035      34      55 ..     122     143 ..     114     147 .. 0.85
   2 ?    2.5   0.0      0.17        92     134     170 ..     173     208 ..     156     222 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.6e-05
      AAA_25  34 elallaGapgtGKttlaldlal 55 
                 + +ll+G+pg+GKt+la  la+
  KKY21528.1 122 SGVLLYGPPGCGKTMLAKALAH 143
                 5589*************99986 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.17
      AAA_25 134 eaaieevegvrlvviDplsralggdensnsdvgalve 170
                    +++  ++  v iD ++++lg    s+++++ +v+
  KKY21528.1 173 FSLARK-LQPTIVFIDEIDAVLGTRRSSEHEASGMVK 208
                 445555.4599*************5555555533333 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.5e-05     0.013       3      23 ..     124     144 ..     122     150 .. 0.91
   2 ?    0.2   0.0       1.2   6.2e+02     131     160 ..     296     324 ..     284     329 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.5e-05
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 v+l G++G+GKT+L++ la++
  KKY21528.1 124 VLLYGPPGCGKTMLAKALAHE 144
                 799***************986 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.2
                 CHHHHCTTSSCE..EEEE--TCCHHHHHHH CS
       NACHT 131 alrdleeqleeaivlevegfsesrrkqlvr 160
                 + +dl+e  ++a+++ v+++++srr q +r
  KKY21528.1 296 G-SDLKEACRDAAMVPVREMIRSRRSQGLR 324
                 4.4899999999************998765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   7.5e-06    0.0039       1      44 [.     124     188 ..     124     236 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 7.5e-06
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.....................gvnlrdvakenglllevdpe 44 
                 +ll G+pG+GKt lak+L+ + g                      +  + ++a++ ++ + + +e
  KKY21528.1 124 VLLYGPPGCGKTMLAKALAHESGAtfinlhistltekwygdsnklVNAVFSLARKLQPTIVFIDE 188
                 799***************87753345555666666666666666566666666666666555555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.6e-05     0.013       2      27 ..     124     150 ..     123     203 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.6e-05
      AAA_28   2 ivitGgestGKTtlleaLaar.gypvv 27 
                 + + G++++GKT l++aLa + g + +
  KKY21528.1 124 VLLYGPPGCGKTMLAKALAHEsGATFI 150
                 6799***************76455444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.8e-05     0.015       5      44 ..     124     164 ..     121     210 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.8e-05
      AAA_24   5 iliyGpsgiGKTtlakel..gpkplfidtekGlksldadkfp 44 
                 +l+yGp+g GKT+lak l  +  + fi++  ++  ++ + ++
  KKY21528.1 124 VLLYGPPGCGKTMLAKALahESGATFINLHIST-LTEKWYGD 164
                 79***************9887777777776655.45555555 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   5.4e-05     0.028      48      75 ..     124     151 ..     111     166 .. 0.84
   2 ?   -2.0   0.0       5.4   2.9e+03     139     177 ..     155     191 ..     150     196 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.4e-05
       Rad17  48 LLisGPsGCgkstvvkvLskelgiklre 75 
                 +L+ GP+GCgk+   k L+ e g  +++
  KKY21528.1 124 VLLYGPPGCGKTMLAKALAHESGATFIN 151
                 4789*****************9988765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 5.4
       Rad17 139 edlPnkfyrdsdalrevirkylrssealplilviteies 177
                   l +k+y+ds++l + +    r  ++   i+ i ei+ 
  KKY21528.1 155 STLTEKWYGDSNKLVNAVFSLARKLQP--TIVFIDEIDA 191
                 567778888888888877766555554..6667777876 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.5e-05     0.024      19      48 ..     119     148 ..     115     194 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.5e-05
                      T-SS-EEEEEETT--HHHHHHCC--TTS-E CS
  Sigma54_activ_2  19 qsklpvfltGekGsgkelvArlLhknsgpw 48 
                      ++ + v+l G++G+gk++ A++L+++sg  
       KKY21528.1 119 AAPSGVLLYGPPGCGKTMLAKALAHESGAT 148
                      56778*******************999874 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   5.9e-05     0.031      14      75 ..     124     184 ..     118     245 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.9e-05
                 EEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSB CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe.pqlfpelt 75 
                 v + G+ G+GK+ L+k+la+++  t   i+l    l+e+    ++k +  ++    +l+p++ 
  KKY21528.1 124 VLLYGPPGCGKTMLAKALAHESGATF--INLHISTLTEKWYGDSNKLVNAVFSLaRKLQPTIV 184
                 6799***************9987543..33333455556666666666666666566666664 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   8.4e-05     0.044      54     115 ..     122     188 ..     116     191 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.4e-05
      DUF815  54 nnvLLwGarGtGKSslvkallneyaeeg..Lrlievekedlkelpklvellrerper...filfvDD 115
                 + vLL+G  G+GK  l kal +e  ++   L++  ++++   + +klv+++ + +++    i+f+D 
  KKY21528.1 122 SGVLLYGPPGCGKTMLAKALAHESGATFinLHISTLTEKWYGDSNKLVNAVFSLARKlqpTIVFIDE 188
                 569********************99988667888888888888888888776554442227999996 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.5e-05     0.034     117     138 ..     124     145 ..      62     150 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.5e-05
   Parvo_NS1 117 vwfyGpantGktnlaeaIakav 138
                 v++yGp+ +Gkt+la+a+a+ +
  KKY21528.1 124 VLLYGPPGCGKTMLAKALAHES 145
                 899****************965 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00012     0.063      28      66 ..     116     153 ..     107     174 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00012
       AAA_7  28 lllknkkpvllvGptGtGKtviikdllkkldkekylslt 66 
                  l+++   vll+Gp G+GKt+++k l ++    +++ l+
  KKY21528.1 116 SLMAAPSGVLLYGPPGCGKTMLAKALAHESG-ATFINLH 153
                 67788889****************9888766.4444444 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0004      0.21      23      44 ..     124     145 ..     120     161 .. 0.85
   2 ?   -1.0   0.0       2.7   1.4e+03     108     131 ..     170     193 ..     150     208 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0004
    ATPase_2  23 yfiYGpegsGKtaLlkeiienl 44 
                 +++YGp g+GKt L k ++ ++
  KKY21528.1 124 VLLYGPPGCGKTMLAKALAHES 145
                 579************9988765 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.7
    ATPase_2 108 lllekikkkgkkiiiiiDelqkli 131
                 ++  ++ +k +  i++iDe+  + 
  KKY21528.1 170 NAVFSLARKLQPTIVFIDEIDAVL 193
                 344455666666899999987665 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1    0.0002      0.11       1      25 [.     127     151 ..     127     156 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.0002
                 EE-TTSSHHHHHHHHHHHHTEEEEE CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthls 25 
                 +G+PG+GK+ +++ l+++ g t+++
  KKY21528.1 127 YGPPGCGKTMLAKALAHESGATFIN 151
                 7*******************99987 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00016     0.083      18      57 ..     117     153 ..     106     163 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00016
                      HCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEE CS
  Sigma54_activat  18 vaktdlsvlitGesGtGKellaraiheaskrkekpfvavn 57 
                      +++ ++ vl+ G  G+GK++la+a+ ++s    + f+++ 
       KKY21528.1 117 LMAAPSGVLLYGPPGCGKTMLAKALAHESG---ATFINLH 153
                      5677889*****************976654...4555555 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00016     0.084      20      46 ..     122     148 ..      90     161 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00016
                 EEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  20 dvilLeGdLGaGKTtlvrglakalgve 46 
                 + +lL+G+ G+GKT+l+++la++ g +
  KKY21528.1 122 SGVLLYGPPGCGKTMLAKALAHESGAT 148
                 349******************998875 PP

>> Guanylate_kin  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0     0.001      0.54       5      39 ..     124     159 ..     121     167 .. 0.89
   2 ?   -1.4   0.0         3   1.6e+03     111     131 ..     177     196 ..     164     213 .. 0.66
   3 ?   -1.2   0.0       2.6   1.4e+03       7      38 ..     232     260 ..     227     266 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
                    EEEESTTTSSHHHHHHHHHHHSTTTEE.E--EEESS CS
  Guanylate_kin   5 vvlvgpsgaGksslkkaLlselpekfg.vsvshtTr 39 
                    v l gp g Gk +l kaL +e   +f  + +s  T 
     KKY21528.1 124 VLLYGPPGCGKTMLAKALAHESGATFInLHISTLTE 159
                    6899**********************5599998885 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3
                    TTTTEEEEEEEESSHHHHHHH CS
  Guanylate_kin 111 aelspiivFikppslkelqrr 131
                     +l+p ivFi  + + +l +r
     KKY21528.1 177 RKLQPTIVFI-DEIDAVLGTR 196
                    4799999**9.4444444444 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.6
                    EESTTTSSHHHHHHHHHHHSTTTEEE--EEES CS
  Guanylate_kin   7 lvgpsgaGksslkkaLlselpekfgvsvshtT 38 
                    ++g++    + + +a+l++ p+kf v+ +  T
     KKY21528.1 232 VLGAT-NRIQDIDDAILRRMPKKFPVPLP--T 260
                    55555.334678999*******9976665..4 PP

>> YqaJ  YqaJ-like viral recombinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00023      0.12      42      75 ..      43      76 ..      19      88 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00023
        YqaJ 42 ehefkenaftawGtelEplaraeyelatgdkvrd 75
                + +++e + +++G + E+l+ ++ye+a+ ++v  
  KKY21528.1 43 DPPKNEDNNARHGSRKEDLVLTQYEQAIAMDVIA 76
                44568889999*****************999976 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00034      0.18      51      81 ..     122     150 ..     116     191 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00034
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfv 81 
                  +vLl Gp+g Gkt la a+++e g+   f+
  KKY21528.1 122 SGVLLYGPPGCGKTMLAKALAHESGAT--FI 150
                 589*******************98854..33 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00035      0.19      15      41 ..     120     146 ..     112     157 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00035
  Zeta_toxin  15 rPklillgGqpGAGKselaellkdele 41 
                  P  +ll G pG+GK+ la++l+ e +
  KKY21528.1 120 APSGVLLYGPPGCGKTMLAKALAHESG 146
                 68899*****************99973 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.078        41       3      20 ..     125     142 ..     124     158 .. 0.88
   2 ?    5.7   0.0     0.021        11     244     268 ..     168     191 ..     165     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.078
      AAA_21   3 vliGpNgsGKSnLLdald 20 
                 +l+Gp g+GK+ L +al 
  KKY21528.1 125 LLYGPPGCGKTMLAKALA 142
                 79**************95 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.021
      AAA_21 244 llalltallralkkgsllliDEpEn 268
                 l   + +l+r l++ ++++iDE+++
  KKY21528.1 168 LVNAVFSLARKLQP-TIVFIDEIDA 191
                 5577899******9.********95 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00045      0.24       5      71 ..     128     189 ..     124     194 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00045
  Viral_helicase1   5 GvpGcGKStlirkllrts..liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDEy 71 
                      G pGcGK+ l + l+++s    +  n     l  ++  ++++l v+ v s+  +l +     i+++DE+
       KKY21528.1 128 GPPGCGKTMLAKALAHESgaTFI--NLHISTLTEKWYGDSNKL-VNAVFSLARKLQP----TIVFIDEI 189
                      78**************9764222..222235555555666555.4445555555544....49999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 2289.21
//
Query:       KKY21529.1  [L=533]
Description: putative cutinase transcription factor 1 alpha [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-38  130.6   0.0    8.1e-38  130.0   0.0    1.3  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.0   0.0   4.5e-42   8.1e-38       1     265 [.     199     439 ..     199     441 .. 0.95

  Alignments for each domain:
  == domain 1  score: 130.0 bits;  conditional E-value: 4.5e-42
  Fungal_trans   1 ldrffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsL 97 
                   ++ +f ++ p  p++++  f++ +    + k++  s lll a+l  G++ + +++  ++s +t  +    +f+ ra++l+  d+++++++++i+q+L
    KKY21529.1 199 IEAYFRWVAPVVPVINRSRFMRRY----HDKKNPPSLLLLQAMLLAGSRVCTNPQLMDSSGSTAAA--AMTFFKRAKALY--DANYEDDRITIVQAL 287
                   578*********************....888888888889******************99999976..7899********..*************** PP

  Fungal_trans  98 lllelyektssd.ralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlw 193
                   +l+ +y  + +d ++ + ++  +a+++a+  g+hr  ++++      l+ +++  ++R+ww+ F  D+ +a+ lGrp++++ ++ ++++  ++d+l+
    KKY21529.1 288 VLMGWYWEGPEDvTKNVFYWTRIAITVAQGSGMHRSVENSQ------LSRADKRLWKRIWWTLFTRDRSVAVALGRPTMINTDESDVEMMSEEDFLD 378
                   *****************************************......99999**************************99***************** PP

  Fungal_trans 194 esddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlqseklswveeleraldnW 265
                   + +d  +e+++e       ++++++ + ++L++i++ ++++ +s+ ++ ++++        ++  ++al  W
    KKY21529.1 379 DDTDHPAEYQPE------AIHVQFFMQYVKLCEIMGLVLSQQYSVASKARRTNAI-----DLTHSDMALADW 439
                   ***********9......8****************************99999988.....777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 3340.31
//
Query:       KKY21530.1  [L=463]
Description: putative cystathionine beta-lyase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     3e-138  460.5   0.0   3.5e-138  460.3   0.0    1.0  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
     0.0018   17.3   0.0      0.003   16.6   0.0    1.3  1  Aminotran_5      Aminotransferase class-V
     0.0024   17.2   0.0     0.0049   16.2   0.0    1.4  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  460.3   0.0  5.9e-142  3.5e-138       2     381 ..      56     425 ..      55     426 .. 0.98

  Alignments for each domain:
  == domain 1  score: 460.3 bits;  conditional E-value: 5.9e-142
                      HHHHHTTTTCHTTTTBSS--B---SBBBESSHHHHCTTCSSS-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTEEEE CS
  Cys_Met_Meta_PP   2 TllvhagqekdeqtgavavpiyltstykfkdvdeafageekgyeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailallkaGdeiv 95 
                      T lv ++++ d q++a++vpiy+++t+k++     ++g   +y+Y+Rsgnptr++le+++a++ ++++al+vssGm+A+  +i++ll+ Gde+v
       KKY21530.1  56 TELVYTESN-D-QHNASSVPIYQSATFKQT-----SGGGGGEYDYTRSGNPTRTHLERHLAKIMSAKRALVVSSGMGAL-DVITRLLRPGDEVV 141
                      666776666.4.8*****************.....9999999*************************************.9************* PP

                      EESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT..-EEEEEGTTTHTTTS-GGGG CS
  Cys_Met_Meta_PP  96 vsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkag..vlvvvDntfaspllqrplkl 187
                      + ddlYggt+rllk++ ++ gi v++vdt++++++ ++++++t +v+lEtptnpl+k+vDi+++a++a++a+  +lv vDnt++spll +pl+l
       KKY21530.1 142 TGDDLYGGTNRLLKYLSTNGGIIVHHVDTTNPDKVSAVLSPRTAMVLLETPTNPLIKIVDIPRLAAAAHAANpsCLVAVDNTMLSPLLLNPLEL 235
                      ***********************************************************************999******************** PP

                      T-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE-TTS CS
  Cys_Met_Meta_PP 188 gaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekhpkvekvyYpgl 281
                      gaDi ++S+TKyl+Gh+d++aGv++v++ ee++++l+f+ na G+ lspfd+wlllrG+kTL++R++++q+nA+++A fLe+h    +v+Ypgl
       KKY21530.1 236 GADIHYESGTKYLSGHHDLMAGVLAVNN-EEIGNRLYFTINASGCGLSPFDSWLLLRGIKTLKVRMDQQQSNAQRIAGFLESHG--FRVRYPGL 326
                      ****************************.******************************************************9..9******* PP

                      TTSTTHHHHHHHSSSG-SEEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHH CS
  Cys_Met_Meta_PP 282 pshpqhelakkqlkgaggvlsFelkseeekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRlsvGiEdvdDlia 375
                      +shpq++l++++++g+g+vlsFe+++    ++++v++ kl+ +++s+G+v+sli++p+ m+hasi++++r+++ + +d+iRl+vGiEdvdDli+
       KKY21530.1 327 KSHPQYDLHHSMARGSGAVLSFETGDI-GLSERIVESAKLWGISVSFGCVNSLISMPCRMSHASIDAKTRAEREMPEDIIRLCVGIEDVDDLID 419
                      ************************988.679*************************************************************** PP

                      HHHHHH CS
  Cys_Met_Meta_PP 376 Dlkqal 381
                      Dl++al
       KKY21530.1 420 DLRRAL 425
                      ****98 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.1e-07     0.003      62     203 ..     115     248 ..      94     252 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.1e-07
                  GGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HH CS
  Aminotran_5  62 eeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpve 159
                  ++ +++s++  a+ ++ +     l+pgde+v+++  + ++    + l+   g+ v+++        ++d++ + l+++t++v +    n +  i +++
   KKY21530.1 115 KRALVVSSGMGALDVITRL----LRPGDEVVTGDDLYGGTNRLLKYLSTNGGIIVHHVDT-----TNPDKVSAVLSPRTAMVLLETPTNPLIKIVDIP 203
                  4455555555566665554....59********99999999899****999999999987.....7899***************************** PP

                  HHHHHHHH.T.T-EEEEE-TTTTTTS---HHHHTESEEEEETTTTT CS
  Aminotran_5 160 eigklakk.k.galvlvDaaqavghipidvkklgvDflafsghKll 203
                  +++++a++ +  +lv+vD + ++    ++  +lg+D+ + sg K+l
   KKY21530.1 204 RLAAAAHAaNpSCLVAVDNT-MLSPLLLNPLELGADIHYESGTKYL 248
                  ********5479******85.6677889999***********9976 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.2e-07    0.0049      21     116 ..      96     188 ..      89     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 8.2e-07
                      S.SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTEE CS
  DegT_DnrJ_EryC1  21 s.gpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtynidpaaieaaitertk 113
                      s +p+ +++E+ +a+ + +k a+ vssG  Al ++ r l   pgdeV++    + +t     +l  +   +  + dt n  p+++ a++ +rt+
       KKY21530.1  96 SgNPTRTHLERHLAKIMSAKRALVVSSGMGALDVITRLLR--PGDEVVTGDDLYGGTNRLLKYLSTNGGIIVHHVDTTN--PDKVSAVLSPRTA 185
                      35788899***************************99975..77*******9999999999999888877777777766..6688888999988 PP

                      EEE CS
  DegT_DnrJ_EryC1 114 aIl 116
                       +l
       KKY21530.1 186 MVL 188
                      776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 2969.94
//
Query:       KKY21531.1  [L=657]
Description: hypothetical protein UCRPC4_g03635 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.035   14.2   0.0      0.068   13.2   0.0    1.5  1  LysM      LysM domain


Domain annotation for each model (and alignments):
>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.8e-06     0.068       1      44 []     230     273 ..     230     273 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.8e-06
                 EEE-TT--HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaNnlsspdkifpGqkLkiP 44 
                 ++Vk+ DTL ++  +yg +   +++ N+  ++d+i++  +  +P
  KKY21531.1 230 HHVKPEDTLAGVMIKYGCQPAVFRKVNRFWPNDNIQIRKVVLLP 273
                 89*****************************999*998777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.56
# Mc/sec: 3556.43
//
Query:       KKY21532.1  [L=1044]
Description: putative gpi-anchor biosynthetic protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.1e-163  542.3  38.0   9.1e-163  542.3  38.0    1.5  2  PigN             Phosphatidylinositolglycan class N (PIG-N)
    1.4e-09   38.0   5.0    3.6e-08   33.4   5.0    2.1  1  Phosphodiest     Type I phosphodiesterase / nucleotide pyroph
      2e-09   37.3   0.1    3.3e-09   36.6   0.1    1.2  1  Sulfatase        Sulfatase
    1.6e-06   27.7   0.0    2.7e-06   26.9   0.0    1.3  1  Metalloenzyme    Metalloenzyme superfamily
     0.0058   15.6   0.0      0.012   14.6   0.0    1.4  1  Alk_phosphatase  Alkaline phosphatase
  ------ inclusion threshold ------
      0.058   13.4   0.4       0.18   11.8   0.1    2.0  2  DUF5038          Domain of unknown function (DUF5038)
       0.13   12.3   0.1       0.31   11.1   0.1    1.6  1  PglZ             PglZ domain


Domain annotation for each model (and alignments):
>> PigN  Phosphatidylinositolglycan class N (PIG-N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1      0.86   2.2e+03      77      98 ..      17      38 ..       7      48 .. 0.77
   2 !  542.3  38.0  3.6e-166  9.1e-163       2     455 .]     452     961 ..     451     961 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.86
        PigN 77 ltyylYllfPvlfweevlaerk 98
                 ++y+Y +f ++f++ v++ ++
  KKY21532.1 17 HLIYIYSIFDIYFVSPVVSGMQ 38
                57899********999987666 PP

  == domain 2  score: 542.3 bits;  conditional E-value: 3.6e-166
        PigN   2 GLrYyqtYdrlfLrtivtlgylgWilyllltvlklhvlkekkk.kktdsktllalkflavlllllllvllllqkspltyylYllfPvlfweevlaerki 99 
                 GLrY+qtYd+lfLr++vt+gylgWi+y+++t+++lhvl++ ++ ++t+ +t   + f++  +l++l++ l++qks+ltyy+Y++fPv+fweev+a+r++
  KKY21532.1 452 GLRYLQTYDWLFLRALVTAGYLGWIAYATTTIIDLHVLHGATDaRRTTTTT---ILFSS--ILVILYSTLWIQKSSLTYYAYAIFPVVFWEEVFAHRST 545
                 9***************************************99644444443...45888..************************************** PP

        PigN 100 lkeglkellkevksskslvkkllllllivlvlellvlgyfhreilsvlfvllalwpllygtsflkknsllsllWllsclllsvFpllpvektenltlvv 198
                 lk+g + ll +++s+k+++   +  ++++++le+lv++yf+rei++++f+l++ wp++yg++fl+ n +l+++W+l cl++s+F+llp+ k+e+ ++++
  KKY21532.1 546 LKSGQRILLGQIASTKDYLVLGVSSISFIALLEALVQSYFRREIYTICFILATTWPAMYGIKFLRDNISLVVCWTLGCLAMSTFTLLPAIKVESSSTIT 644
                 *************************************************************************************************** PP

        PigN 199 lggllilliglllll..ksl............skksvsrall.vqvllvvlsllvtrssvsslqakqglpllnqvasWiilvlslvlpllksskp.... 278
                 +ggll++++g+l+++  k++            s +s+s++++ +qv+l++l++lvtrssv+slqakqglpl+nqv++W++lv+sl +p++ +++p    
  KKY21532.1 645 FGGLLMFATGILYMVfeKQIlarskasradisSISSSSQTIIgIQVGLILLAILVTRSSVASLQAKQGLPLGNQVVGWFVLVASLAMPFIPHQQPnhhy 743
                 *************64543336777899999987777888999****************************************************99*** PP

        PigN 279 lsRllsiflafaptfilLsisyEgLFyvvlsltlvlwieleaelkqe.........................................keesekesese 336
                 l+Rl+s+fl+f+p+fi+L isyEgLFy+ +++tl++w++le++++                                            +++ ++s+++
  KKY21532.1 744 LHRLMSVFLTFSPIFIILAISYEGLFYFSFCMTLITWVRLEHRIYTLhkdrtpsqssidslkistsfhnghatfaetatnglseavspLKSALAASHNR 842
                 *******************************************99999**************************************9844444555666 PP

        PigN 337 kkekekkksssrsltlsdlRialfflfflqvaFFGtGniasisSFslssvyrfipvfspflmgaLlllKlliPfvlvsaalgalnkrlrlpssslfllv 435
                  ++  ++ks++rsltl+d+Ri+lff+f+lq+aFF+tGniasisSFsl+svyr+ip+f+pf++gaLl+lKlliPf+l+sa+lg+ln+r ++++s+lf++v
  KKY21532.1 843 VTAIPTTKSKYRSLTLADIRISLFFFFLLQSAFFSTGNIASISSFSLDSVYRLIPIFDPFSQGALLVLKLLIPFALISANLGILNRRIGVAPSALFMVV 941
                 6777888889***************************************************************************************** PP

        PigN 436 llisDvltLnFfflVkdeGS 455
                 ++isDv+tLnFf++VkdeGS
  KKY21532.1 942 MAISDVMTLNFFYMVKDEGS 961
                 *******************9 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   5.0   1.4e-11   3.6e-08      38     237 ..     107     286 ..      55     313 .. 0.67

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 1.4e-11
                   E-SSS-SHHHHHHHHHHSS-HHHHS--SSSEEETTTTEEEEEETTTTGGGGGCTT....S-HHHHHHHTHTTCEEEESETTTTSEBTTCT.SC.TBH CS
  Phosphodiest  38 rpvfPtlTfpnhaslvTGlyPgeHGivgNtfydrktgeyvvfvtededaprwwqg....epiwdtaakarglkaaalfwpgsevdystyyylvsetp 130
                   ++ +Pt++ p+h++l+ Gly +   +      ++   +  vf+++++  +  w++    ++++d a+   ++  ++++    +++ +        t 
    KKY21532.1 107 HTRVPTESRPGHVALIAGLYEDVSAVMTGWKHNPVHFDS-VFNRSRHT-WS-WGSpdilPMFVDGAVPG-RVEGDTYGAEFEDFTQD-------ATN 192
                   555555555555555555555555444422223333332.44444333.22.22234434444444444.44444444444444444.......444 PP

                   HSBTCT.CSTTSCHHHHHHHHHHHHHHHCHTHSHHHHHCT.SSESEEEEEECCCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTTGTTTEEE CS
  Phosphodiest 131 pryleddfnakvpledkvdkavlqtwldaafakvvlekel.ekpdlllvyleetDtvgHkfGpdspevedalrrvDkaigdLlealderglsaetni 226
                    +y+   f++  +l            ++ a++++ l+++l e+ ++++++l ++Dt gH++ p+s+e + +++ vD+ ++++ e++++   +++t++
    KKY21532.1 193 LDYW--VFEKVKEL------------FKSAKRNATLDAALrEEKNVFFLHLLGLDTTGHSYRPYSKEYLHNIKVVDQGVKEITELIEKFYDDDKTAF 275
                   4444..33333333............444444444444445999*******************************************999999**** PP

                   EEEES---EEE CS
  Phosphodiest 227 ilvSDHGmadv 237
                   + ++DHGm+d 
    KKY21532.1 276 VFTADHGMSDW 286
                   ********986 PP

>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.1   1.3e-12   3.3e-09     208     289 ..     233     313 ..     152     330 .. 0.80

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1.3e-12
                 H.......HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHCEE CS
   Sulfatase 208 r.......qlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekaprv 289
                          +  +yl+ ++ vD++++++ + +e+   +d+t +vft+Dhg s         +g + + +++ tr+Pl+ w++g  +p++
  KKY21532.1 233 DttghsyrPYSKEYLHNIKVVDQGVKEITELIEKFYDDDKTAFVFTADHGMSD--------WGSHGDGHPDNTRTPLIAWGSGVAKPKK 313
                 0444444477789**************************************77........88888999***************99954 PP

>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.1e-09   2.7e-06     118     196 ..     208     292 ..     190     340 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1.1e-09
                    HHHHHHHHHH.CC.-SEEEEEE-HHHHHHHTT-H..HHHHHHHHHHHHHHHHHHTTS-T....TTEEEEEE-SSB--TTTSS... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 118 evaekaldailsgkfdlvvvniknaDmvGHtgdl..eatiaaieaaDeavkeildaieq....vdgilvvtADHgnaedmvkrdk 196
                    ++ +++lda l ++ +++++++   D  GH+  +  +++ + i+ +D+ vkei++ ie+    +++ +v tADHg  +   + d 
     KKY21532.1 208 AKRNATLDAALREEKNVFFLHLLGLDTTGHSYRPysKEYLHNIKVVDQGVKEITELIEKfyddDKTAFVFTADHGMSDWGSHGDG 292
                    56678899999999****************976533899***************9998544437889********8876666443 PP

>> Alk_phosphatase  Alkaline phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.5e-06     0.012     177     310 ..     126     284 ..     106     339 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.5e-06
                      CCT.SBHHHHHCCT..TCEEE-SHHHHHHHCTSTSSCEEEESSSSSCS-CCCSCTCCE.................--HHHHHHHHHHHH..... CS
  Alk_phosphatase 177 rkdGrnlieeakkk..gyqyvsdrkeLlkakeenvkplLGLFadgdlkveldrdeatd.................PsLkemtevAiklL..... 246
                      ++d   ++  +k++  ++  v +r+  + +  ++   +L +F dg ++ ++++d                      + ke+ ++A +       
       KKY21532.1 126 YEDVSAVMTGWKHNpvHFDSVFNRSRHTWSWGSP--DILPMFVDGAVPGRVEGDTYGAefedftqdatnldywvfEKVKELFKSAKRNAtldaa 217
                      5555556666666644455566666666555555..6677777777777777776654455555555555555553333333333221133333 PP

                      .TTSTT-EEEEEEETCHHHHHHTTTHHHH..HHHHHHHHHHHHHHHHHCHH...CTTEEEEEEESSEESE CS
  Alk_phosphatase 247 .sknekGFFLlVEGsrIDhaaHendavga..lsEvvefdeAvkaalefakk...eketlvvvTaDHshvf 310
                       +++++ FFL   G  +D  +H  +++++  l+ ++ +d+ vk+ +e+ +k   +++t  v TaDH   +
       KKY21532.1 218 lREEKNVFFLHLLG--LDTTGHSYRPYSKeyLHNIKVVDQGVKEITELIEKfydDDKTAFVFTADHGM-S 284
                      39999*******99..899999999886444*******************9998999*********87.4 PP

>> DUF5038  Domain of unknown function (DUF5038)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   7.2e-05      0.18      10      99 ..     188     282 ..     181     296 .. 0.86
   2 ?   -3.6   0.0       4.1   1.1e+04      61      75 ..     476     490 ..     468     496 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.2e-05
     DUF5038  10 eeltemdflsfeelsqffssaqt.....aslkeqfpvyltrigrtdvtsaeylpdetgypdtttvelhfllsddstlpvfydtmtgafsfgedrt 99 
                 ++ t++d+  fe++ ++f sa+      a+l+e+  v++  +   d t   y p    y     v  + +      +  fyd    af f  d  
  KKY21532.1 188 QDATNLDYWVFEKVKELFKSAKRnatldAALREEKNVFFLHLLGLDTTGHSYRPYSKEYLHNIKVVDQGVKEITELIEKFYDDDKTAFVFTADHG 282
                 4679***************997433344789*******999999****************9999988888888899999***********99875 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.1
     DUF5038  61 tgypdtttvelhfll 75 
                   y  tt ++lh+l 
  KKY21532.1 476 IAYATTTIIDLHVLH 490
                 4699999*****985 PP

>> PglZ  PglZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00012      0.31     101     169 ..     209     283 ..     186     284 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
        PglZ 101 kkderre..llkdkevvyivhnkvDalgd....kasteqksfeaveeslkelkelvkslleengykvlltaDHGf 169
                 k+++ ++  l ++k+v  + +   D +g+     +    +  + v++ +ke+ el+++  +++ +  + taDHG 
  KKY21532.1 209 KRNATLDaaLREEKNVFFLHLLGLDTTGHsyrpYSKEYLHNIKVVDQGVKEITELIEKFYDDDKTAFVFTADHGM 283
                 33333446555678888888899999**966533344456678899999*************99**********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1044 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       861  (0.0480228); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.83u 0.39s 00:00:01.22 Elapsed: 00:00:00.51
# Mc/sec: 6124.85
//
Query:       KKY21533.1  [L=366]
Description: putative vacuolar protein sorting protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-46  156.8   0.4    7.2e-46  156.4   0.4    1.1  1  EAP30     EAP30/Vps36 family
     0.0053   16.8   0.1      0.012   15.7   0.1    1.5  1  EutK_C    Ethanolamine utilization protein EutK C-terminus


Domain annotation for each model (and alignments):
>> EAP30  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.4   0.4     8e-50   7.2e-46       1     235 [.     112     334 ..     112     335 .. 0.89

  Alignments for each domain:
  == domain 1  score: 156.4 bits;  conditional E-value: 8e-50
       EAP30   1 vGiagl.qrreqtaaeyqdlgaellaealqdleallakfkesLvklaekhkakiksdpaf..raqftkmcaslGvdplssk.......kseslgflell 89 
                 vGiagl +r  +t++++    ++++  a++dleal++++k+ +v+laek++++  +++     ++ t+++a+lG+  +++k       +sesl      
  KKY21533.1 112 VGIAGLeRRGLETRKNN----ERVIGGAFEDLEALMSSAKD-IVALAEKFAKETGRQSDTetSNALTESAAALGM--VTTKdllgsggSSESL------ 197
                 7****************....********************.***********977666500455566******9..4555555554577777...... PP

       EAP30  90 glgdfyyeLavqivevclatraeng......glisleelyalvnrarggvalvspdDllraiekllvlg.........sglsvlqvggkkvvrSvptel 173
                     ++ eL+++++e+++++r  +g      g++sl +l+a++n +r+gv+l+sp+D+++a++++++l+         sgl v+q           + +
  KKY21533.1 198 ----YLSELSRNLAEYLTDDR--RGvlrlegGIMSLVDLWAVFNGSRNGVELISPADFEKAASLWEKLKlpvrlrrfkSGLLVVQ-----------RTD 279
                 ....**************885..44456666**********************************666555**************...........999 PP

       EAP30 174 ntdqvevlevakrlvsllaekssgggvtaselaeeeenlgwsvarakeaLeelereGllwvD 235
                 ++d+    +++++++s++++  s +gvta+e a++   +gwsv++a e+Le++e++G+l+++
  KKY21533.1 280 RSDD----KTVQQIQSWIRDLPSLRGVTAQETAQH---FGWSVGVASEELEMAEEQGALCRE 334
                 9999....9***********************888...**********************97 PP

>> EutK_C  Ethanolamine utilization protein EutK C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   1.3e-06     0.012      16      47 ..     300     331 ..     294     335 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.3e-06
      EutK_C  16 qGmtaGevaahfaWPLekarqvLeqLfsdGaL 47 
                 +G+ta e a hf+W +  a + Le    +GaL
  KKY21533.1 300 RGVTAQETAQHFGWSVGVASEELEMAEEQGAL 331
                 49*********************998888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 2221.53
//
Query:       KKY21534.1  [L=465]
Description: putative sac3 ganp domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-25   88.6   0.5    5.1e-23   81.9   0.5    2.1  1  SAC3_GANP        SAC3/GANP family
  ------ inclusion threshold ------
      0.044   13.7   0.1       0.25   11.3   0.0    2.1  2  CSN8_PSD8_EIF3K  CSN8/PSMD8/EIF3K family
       0.08   13.0   0.0       0.22   11.5   0.0    1.7  1  COX5A            Cytochrome c oxidase subunit Va


Domain annotation for each model (and alignments):
>> SAC3_GANP  SAC3/GANP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.5   8.6e-27   5.1e-23      41     287 ..     206     423 ..     167     426 .. 0.87

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 8.6e-27
                 XXXXXXXXXXXXXXX-----HHHHHHHHHHHHHHTG..G..GTTTCHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHHHHHHHHTTS.---C CS
   SAC3_GANP  41 KeysRsaagqeeplpsdlRppevLkkTldYLlkeildreeeelaevydFiwDRtRaiRqDltiqnlskaeaveilerivrfhilslhrlceepessfde 139
                 K+y R    +++p+p+++Rp ++Lk+Tl+ L k+         ++ y +i D +++ RqDlt+q+++++ +v+++e  +r+ +       +        
  KKY21534.1 206 KNYFR---LTAPPNPETVRPLPILKQTLELLKKKWR------KENNYTYICDQFKSLRQDLTVQHIKNDFTVNVYEIHARIAL------EKG------- 282
                 67777...5779****************98886655......4678******************************8888753......333....... PP

                 HHHHHHHHHHHHHHHHHHHHHH...---TTHHHHHHHHHHHTT...T-HHHHHHHCTS-HHHHTSHHHHHHHHHHHHH--TTHHHHHHHHTTS-HHHHH CS
   SAC3_GANP 140 qqnleqLqkclqsLlelYddlrkkkeelpneaefrayylLlnl...rdpdilrevqelpseilkspevqlalklvaalqennyvrffklvkevsylqac 235
                   +l + ++c ++L+ lY++         +  ef ay +L+ +   +++d+ + + +l      +  v+ al++++al+ +ny rff+l+  ++ + a 
  KKY21534.1 283 --DLGEYNQCQTQLRALYRQKL-----GGHPTEFLAYRILYFIhtcNRSDMNDVLADLTPADKTDGAVKHALDVRSALALGNYHRFFQLYLATPNMGAY 374
                 ..35566789999*****9876.....357789****9999884335589999999**9999************************************* PP

                 HHGGGHHHHHHHHHHHHHHHS-TT---EEHHHHHHHTT-SSHHHHHHHHHHT CS
   SAC3_GANP 236 llerhfnevRrkalkalsraykskskkvpleeLaelLlfddeeeaeefceay 287
                 l+ +++ + R  al+++++ay   + +v+++ ++e L+f+++e+ ++f+ +y
  KKY21534.1 375 LMDMFVGRERLAALSRICKAY---KPDVKIRFVTEELGFESDEQSARFILEY 423
                 *********************...689******************9998776 PP

>> CSN8_PSD8_EIF3K  CSN8/PSMD8/EIF3K family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.25   1.5e+03      68      93 ..     237     264 ..     227     274 .. 0.76
   2 ?   11.3   0.0   4.1e-05      0.25      27     121 ..     330     422 ..     307     429 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.25
  CSN8_PSD8_EIF3K  68 lsa..dltadvagleelvReeiaklvgk 93 
                      + +  ++t++++++++l ++ +++ +++
       KKY21534.1 237 WRKenNYTYICDQFKSLRQDLTVQHIKN 264
                      4433489999999999999988888876 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.1e-05
  CSN8_PSD8_EIF3K  27 lkrlpaaiqqsdeeiqklltLetlLeeanyakfwstlksddlsadltadvagleelvReeiaklvgkaY.esIsadvlaelLglssdeelekfv 119
                      l++l +a +++  +++++l +  +L  +ny +f++++  +  ++   + ++++    R  +++ + kaY    ++   +e Lg++sde+ + f+
       KKY21534.1 330 LADLTPADKTD-GAVKHALDVRSALALGNYHRFFQLYLAT--PNMGAYLMDMFVGRERLAALSRICKAYkPDVKIRFVTEELGFESDEQSARFI 420
                      55666777775.9**********************77765..8888999********************5579999999999999999999998 PP

  CSN8_PSD8_EIF3K 120 ke 121
                       e
       KKY21534.1 421 LE 422
                      76 PP

>> COX5A  Cytochrome c oxidase subunit Va
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.7e-05      0.22      64      97 ..     229     261 ..     220     267 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.7e-05
       COX5A  64 ilEavkekvenkkqiYeyllqelkpvleeLgist 97 
                 +lE +k+k  ++++ Y y+ ++ k+++++L ++ 
  KKY21534.1 229 TLELLKKKWRKENN-YTYICDQFKSLRQDLTVQH 261
                 79**********99.***************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3248.34
//
Query:       KKY21535.1  [L=606]
Description: putative protein kinase activator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-24   85.3   0.0    3.8e-11   42.4   0.0    2.8  3  SH3_1     SH3 domain
    3.5e-15   55.6   0.2    6.8e-07   29.1   0.1    2.7  2  SH3_9     Variant SH3 domain
    8.1e-13   48.4   0.0    1.6e-12   47.4   0.0    1.5  1  PX        PX domain
    7.5e-12   44.8   0.0    4.4e-07   29.5   0.0    2.6  2  SH3_2     Variant SH3 domain
    9.6e-08   31.9   0.4    1.8e-07   31.0   0.4    1.4  1  PB1       PB1 domain


Domain annotation for each model (and alignments):
>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   6.2e-14   2.2e-10       1      47 [.      37      87 ..      37      88 .. 0.90
   2 !   42.4   0.0   1.1e-14   3.8e-11       1      48 []     153     201 ..     153     201 .. 0.97
   3 ?   -3.8   0.0       2.9     1e+04      11      25 ..     368     382 ..     366     383 .. 0.78

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 6.2e-14
                EESSSBEXSS..TTBXEBSTTEEEEEEEECSS.SEEEEEETTS.TEEEEEE CS
       SH3_1  1 iAlYDYeaee..sdELsfkkGDviivleksed.gWwkgrlkgt.gkeGliP 47
                +AlYDYe+    ++EL f+kGD ++v+ +++d +W+++ +      +Gl+P
  KKY21535.1 37 KALYDYEPDPnnKQELAFHKGDFFHVIGREDDtDWYEACNPLIpSARGLVP 87
                7******99888***************************987666777777 PP

  == domain 2  score: 42.4 bits;  conditional E-value: 1.1e-14
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTS.TEEEEEEG CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgt.gkeGliPs 48 
                 i+ YD++ae++dEL  k G+ iiv+++s+ +W+ ++ +g+ g  GliP+
  KKY21535.1 153 IVQYDFNAERPDELEAKAGEAIIVIAQSNPEWFVAKPIGRlGGPGLIPV 201
                 689**************************************99*****5 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 2.9
                 TTBXEBSTTEEEEEE CS
       SH3_1  11 sdELsfkkGDviivl 25 
                 +  L+f++G v ++ 
  KKY21535.1 368 PRTLPFMPGPVAHIT 382
                 6679****9887775 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.1   1.9e-10   6.8e-07       1      47 [.      38      90 ..      38      92 .. 0.90
   2 !   23.9   0.0   7.8e-09   2.8e-05       1      49 []     154     205 ..     154     205 .. 0.94

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 1.9e-10
       SH3_9  1 Alypye..preddeLsLqrGDvitvi.eesedgWlegsl...tGrtGlvPany 47
                Aly+ye  p +++eL + +GD++ vi +e++ +W+e+ +    + +GlvP++y
  KKY21535.1 38 ALYDYEpdPNNKQELAFHKGDFFHVIgREDDTDWYEACNpliPSARGLVPVTY 90
                89***97778999*************88899******965689*********9 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 7.8e-09
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegs...ltGrtGlvPanyve 49 
                 + y++++  +deL+  +G+ i+vi +s++ W+ ++   + G  Gl P++++e
  KKY21535.1 154 VQYDFNAERPDELEAKAGEAIIVIAQSNPEWFVAKpigRLGGPGLIPVSFIE 205
                 569*******************************987779999******997 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   4.5e-16   1.6e-12      17     111 ..     321     418 ..     310     420 .. 0.94

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 4.5e-16
                 SSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHT........TSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSCHHHH.SHHH CS
          PX  17 kkhsyylyevelktgakewtvkRrYsdFeeLhskLlrkfp........rvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrn.sevl 106
                  + +++++e+e+++g ++w+++R Y dF++++  Ll++fp         +++P +P++v + +     +++ + rr+ L+ey+++ll +p +++ ++ +
  KKY21535.1 321 NDMYWFIIECEMEDG-RHWELSRYYADFYDFQIALLNEFPdeagnngkPRTLPFMPGPVAHIT-----DAISNGRRQNLDEYIRKLLAMPPYISrCQLV 413
                 6779**********9.********************************9**********9987.....9*************************9**99 PP

                 HHHHH CS
          PX 107 teFLe 111
                 ++ + 
  KKY21535.1 414 RSLFA 418
                 99886 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   1.2e-10   4.4e-07       2      42 ..      36      76 ..      35      92 .. 0.80
   2 !   12.5   0.0   2.4e-05     0.086       1      52 [.     151     202 ..     151     206 .. 0.73

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1.2e-10
                EEESS-B-S..CGCCB--B-TTEEEEEE..EEEECTTEEEEEE CS
       SH3_2  2 vraiedyvg..edkseLsfkkGdvikvlslgskdsdgwwegev 42
                ++a+ dy++  ++k eL f+kGd+++v+  g++d+ +w+e+ +
  KKY21535.1 36 IKALYDYEPdpNNKQELAFHKGDFFHVI--GREDDTDWYEACN 76
                7999999997677778************..888888***9855 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 2.4e-05
                 EEEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE.CCCE...EEEEGC CS
       SH3_2   1 yvraiedyvgedkseLsfkkGdvikvlslgskdsdgwwegev.gGrv...GlfPss 52 
                 y+++  d+++e ++eL+ k+G+ i v+    +++++w  + +  Gr    Gl+P s
  KKY21535.1 151 YGIVQYDFNAERPDELEAKAGEAIIVI---AQSNPEWFVA-KpIGRLggpGLIPVS 202
                 678899****************99999...7888887333.222333333777765 PP

>> PB1  PB1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.4     5e-11   1.8e-07       3      68 ..     530     594 ..     528     604 .. 0.92

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 5e-11
                 EEEEEETTEEEEEEEEGSSS-HHHHHHHHHHHHTSTCCSEEEEEEETTS.SEEEESSHHHHHHHHHH CS
         PB1   3 dlKlrygggirrelsvssnisfeeLrakvekrfklsdedvklkYpdedg.dlVtitsDeDLeealee 68 
                 ++K+ ++++i   ++v+ +i+f++L +k+ +r+k   ed++++Y+de      +++sD DL+ al+ 
  KKY21535.1 530 KVKVFFQEDILA-IRVPTEITFQQLKDKLIDRLKVK-EDISIQYKDEPTnNYAELNSDQDLDIALTR 594
                 89**********.**********************6.***********99*************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.50
# Mc/sec: 3668.03
//
Query:       KKY21536.1  [L=495]
Description: putative mitochondrial atpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-96  321.4   0.0    4.1e-91  305.6   0.0    2.1  2  AFG1_ATPase   AFG1-like ATPase
    9.1e-05   22.9   0.1       0.11   12.9   0.0    3.3  2  AAA_16        AAA ATPase domain
    0.00023   21.2   0.0    0.00059   19.9   0.0    1.6  1  AAA_14        AAA domain
     0.0044   17.3   0.0      0.016   15.5   0.0    2.0  1  AAA_22        AAA domain
     0.0048   16.8   0.5        4.5    7.1   0.0    2.7  2  Bac_DnaA      Bacterial dnaA  protein
  ------ inclusion threshold ------
      0.033   14.6   0.1       0.13   12.7   0.0    2.0  2  AAA           ATPase family associated with various cellular 
      0.058   13.8   0.1       0.46   10.9   0.0    2.6  2  RNA_helicase  RNA helicase
       0.17   11.2   0.0       0.33   10.3   0.0    1.5  1  Mg_chelatase  Magnesium chelatase, subunit ChlI


Domain annotation for each model (and alignments):
>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.6   0.0   1.8e-94   4.1e-91       6     341 ..      14     376 ..      10     388 .. 0.91
   2 !   13.7   0.1   9.8e-06     0.022     331     361 ..     437     467 ..     431     468 .. 0.91

  Alignments for each domain:
  == domain 1  score: 305.6 bits;  conditional E-value: 1.8e-94
  AFG1_ATPase   6 ryekelqrgeivadaaqaeavealdrlteelaaqdlarks............salgklfgrkr.......ksvepvrglYlwGgvGrGKtylmdlffe 84 
                   y++++++g  ++d+ q   +e+l+ l e l+  + ++              s++  lfg+k         s   ++glY++G vG GKt+lmdlffe
   KKY21536.1  14 EYDRRVEQGRLRNDKHQRDLIEHLQDLHEMLRDYHPPKVVhptieslmpvkkSIFDSLFGGKAgpkpgteISDDLPQGLYMYGDVGSGKTMLMDLFFE 111
                  799**************************66555554444444888888888788888887752211211245679********************** PP

  AFG1_ATPase  85 slp..vekkrrvhfhafmarvhdeltklr....kekdplaivadrlaeearvlCfDEfevsDiadamllsrLleaLfargvtlvaTSNiaPedLykdg 176
                   lp  +  k+r+hfh+fm++vh++l+k+r       d+++ v   +ae+++vlCfDEf+ +D+adam+l rL++ L+  gv++v+TSN+ P++Ly +g
   KKY21536.1 112 TLPpnITAKNRIHFHNFMQDVHKRLHKMRlqygTDFDAIPFVSADIAEQSSVLCFDEFQCTDVADAMILRRLIQSLMSHGVVIVTTSNRHPDELYING 209
                  **955579*******************9999977789************************************************************* PP

  AFG1_ATPase 177 lqrqrFLpaIdlleshlevlevdggvDYRlrklrqaevylapldeaaeaaldklfkelts..gepeaestlevkaRklrvraaagdlvrfsfaelcea 272
                  +qrq F+p I+ll+shl+v+++d+  DYR    ++  vy+ pld+aa+++ dk f+ l s   +p +++tl+v +R l+v++a g+++rf+f +l  +
   KKY21536.1 210 VQRQSFIPCIELLKSHLKVINLDSTTDYRKIPRPPSGVYHHPLDKAASSHADKWFRFLGSpdEDPPHSVTLQVWGRDLHVPMASGKAARFTFHDLIGR 307
                  ***********************************************************9555677899***************************** PP

  AFG1_ATPase 273 arsqsdYlalaerfhtvlledVpvltkakedaarRfiaLvDelYdadvklvvsaevaleelyeagrlef 341
                  a+++ dYl+l + f +++++dVp++t  ++d arRfi+ +D++Y+  +klv+   v+l++l+   +  +
   KKY21536.1 308 ATGAADYLELMRSFDAFIVTDVPGMTYRERDWARRFITFIDAVYESRAKLVLTTAVPLSQLFLSRDEVK 376
                  ************************************************************998766554 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 9.8e-06
  AFG1_ATPase 331 eelyeagrlefefeRtaSRLlelqsedylar 361
                  ++++++++ +f f R++SRL e+ s+++++r
   KKY21536.1 437 SNMFSGDEEAFAFARALSRLTEMGSKEWVER 467
                  567899999*******************998 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0     5e-05      0.11      24      63 ..      89     124 ..      82     195 .. 0.69
   2 ?    0.5   0.0      0.32   7.1e+02      71     129 ..     364     426 ..     333     432 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5e-05
      AAA_16  24 pelvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                 p+ ++ +G+ G+GK+ l++ +++ l  +    +++k++ +
  KKY21536.1  89 PQGLYMYGDVGSGKTMLMDLFFETLPPN----ITAKNRIH 124
                 678899*****************99999....66666666 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.32
      AAA_16  71 alaqalareellrqlldeaesaeleawrekleeala........avpelagaeasrllellkrllal 129
                 +l q++  ++ ++  l++ +sa++e+ +  +    +          + ++++++s+l +++++l++ 
  KKY21536.1 364 PLSQLFLSRDEVKNALTANSSAAQEEGKV-IS---TsqkklshlKDKVDDPDDHSDLSDAMRNLMDD 426
                 35555555555555555533333333332.33...23335667666667777779999999998843 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.6e-07   0.00059      12     102 ..      99     200 ..      92     204 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.6e-07
      AAA_14  12 rvGKTtllkqlikell...vkkesilyinldderdkkladpe.......kllelileklkeekktylflDEiqevpewekalkslvdeg..knldvivt 98 
                  +GKT+l+  ++++l    + k++i + n+ ++  k+l + +       + + ++ + +  e+ ++l++DE q  + +  ++ + + ++  +++ vivt
  KKY21536.1  99 GSGKTMLMDLFFETLPpniTAKNRIHFHNFMQDVHKRLHKMRlqygtdfDAIPFVSADIA-EQSSVLCFDEFQCTDVADAMILRRLIQSlmSHGVVIVT 196
                 68**********8888**9899999999*9997775555333323443344455555554.599**********9999877655555444778899999 PP

      AAA_14  99 GSns 102
                  Sn 
  KKY21536.1 197 TSNR 200
                 9996 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   7.3e-06     0.016       8      38 ..      92     132 ..      87     199 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.3e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee..........e 38 
                 l+ +G +G+GKT+l+  ++e+l+  + a++           
  KKY21536.1  92 LYMYGDVGSGKTMLMDLFFETLPPNITAKNrihfhnfmqdV 132
                 6789******************9888888777776666553 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.2     0.002       4.5      37     144 ..      92     205 ..      82     212 .. 0.59
   2 !    7.1   0.0     0.002       4.5      88     152 ..     311     376 ..     295     407 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.002
                 EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHT...T-HHHHHH......HHT.T-SEEEEE-GGGGTT-HHHHHHHHHHHHH CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrd...kkaeefke......klr.kvDvLliDDiqflagkektqeelfhtfna 125
                 l++yg+vG Gkt L++    ++  n  ++    ++  +F++++ k l++   +  ++f         +  +  vL  D+ q     +    +l  ++++
  KKY21536.1  92 LYMYGDVGSGKTMLMDLFFETLPPNITAKN--RIHFHNFMQDVHKRLHKmrlQYGTDFDAipfvsaDIAeQSSVLCFDEFQCTDVAD--AMILRRLIQS 186
                 89************9987776666554432..2445667777666655522233344432111101222234456666655555444..4456666667 PP

                 HHTTT-EEEEEESS-TTT- CS
    Bac_DnaA 126 lleegkqvvlssDrsPkel 144
                 l+ +g  +v +s+r+P el
  KKY21536.1 187 LMSHGVVIVTTSNRHPDEL 205
                 7777777777777777665 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.002
                 HHHHHHHHTT-SEEEEE-GGGGTT-HH.HHHHHHHHHHHHHTTT-EEEEEESS-TTT-SS--HHHH CS
    Bac_DnaA  88 aeefkeklrkvDvLliDDiqflagkek.tqeelfhtfnalleegkqvvlssDrsPkeleeledrlr 152
                 a+++ e +r+ D+ ++ D+  ++++e+     +++ ++a++e+  ++vl++  + ++l    d ++
  KKY21536.1 311 AADYLELMRSFDAFIVTDVPGMTYRERdWARRFITFIDAVYESRAKLVLTTAVPLSQLFLSRDEVK 376
                 56777899***************999725677888889***********98777676665555555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.6e-05      0.13       1     115 [.      92     205 ..      92     216 .. 0.67
   2 ?   -2.1   0.1       2.1   4.8e+03      77      93 ..     408     424 ..     352     438 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.6e-05
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS.............STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellsk.............yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervv 86 
                 +++yG  G GKT+l+    ++l  ++   +   + +                g   + i  + +++ e++  s+l +DE+     ++           +
  KKY21536.1  92 LYMYGDVGSGKTMLMDLFFETLPPNITAKNRIHFHNFmqdvhkrlhkmrlQYGTDFDAIPFVSADIAEQS--SVLCFDEFQCTDVAD-----------A 177
                 589******************9544444444444411111222222244444555555555555555554..9*******9998888...........7 PP

                 HHHHHHHHHTTTSSSTEEEEEEESS.GGGS CS
         AAA  87 nqLlteldgvkkkeskvivigatnr.pdkl 115
                   L + ++ + +  + v++++++nr pd+l
  KKY21536.1 178 MILRRLIQSLMS--HGVVIVTTSNRhPDEL 205
                 888888888888..4689999999977766 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.1
                 CCCHHHHHHHHHHHHHH CS
         AAA  77 seseeeervvnqLltel 93 
                 ++ ++++++ +++ + +
  KKY21536.1 408 DDPDDHSDLSDAMRNLM 424
                 23344445555555555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00021      0.46       1      61 [.      92     150 ..      92     200 .. 0.84
   2 ?   -2.0   0.0       2.1   4.6e+03      14      36 ..     419     441 ..     416     447 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00021
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqv 61 
                   +++yG+ g GK++l++ + ++l  ++  + k+++ ++n  +d+++  ++       Df ++
    KKY21536.1  92 LYMYGDVGSGKTMLMDLFFETLPPNI--TAKNRIHFHNFMQDVHKRLHKMRLQYGTDFDAI 150
                   699***************99999887..777899999999999988877776666666665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.1
  RNA_helicase  14 lakeLakallkklklkkkdsvys 36 
                   ++++L+++l  ++++ k+++++s
    KKY21536.1 419 AMRNLMDDLGMNMQMLKQSNMFS 441
                   66777777777777777776666 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00015      0.33      25      56 ..      92     124 ..      69     150 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00015
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsllpp.lseeeale 56 
                   l ++G  GsGKtml   + + lpp ++ ++ + 
    KKY21536.1  92 LYMYGDVGSGKTMLMDLFFETLPPnITAKNRIH 124
                   88*************998887776156666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      699  (0.0389871); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.69u 0.36s 00:00:01.04 Elapsed: 00:00:00.51
# Mc/sec: 2905.77
//
Query:       KKY21537.1  [L=941]
Description: putative spindle pole body component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-65  219.3   0.0    1.4e-64  218.7   0.0    1.3  1  GCP_N_terminal  Gamma tubulin complex component N-terminal
    2.4e-53  181.6   0.3      4e-53  180.9   0.3    1.4  1  GCP_C_terminal  Gamma tubulin complex component C-terminal


Domain annotation for each model (and alignments):
>> GCP_N_terminal  Gamma tubulin complex component N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.7   0.0   1.5e-68   1.4e-64       1     305 [.     176     510 ..     176     511 .. 0.90

  Alignments for each domain:
  == domain 1  score: 218.7 bits;  conditional E-value: 1.5e-68
  GCP_N_terminal   1 lrdllylLqGisgkli....rfdekdd...ervvkdvrlpgllppslrslverllelgtlyrrlrkfveevsrsesglvlqalaaaldeelteyy 88 
                     l d+ly+L+G++g+++    +++++d+      +++ +lpg+ +pslr+l++ +l+++++y+ +++f+e  sr+e+g v++al+aa++++l++y 
      KKY21537.1 176 LDDMLYVLMGYEGQYVcfddTYNPSDEksrLAGPDFRTLPGI-DPSLRDLISPMLKMASHYCAIEAFIEVQSRDEFGSVNHALCAAIRHLLKDYI 269
                     68**************55554566555554444444555888.**************************************************** PP

  GCP_N_terminal  89 rliaqlEsqlledsesiltLlrlevwlqetllllrvLanlveeve......................................kanlkggallsl 145
                     rli+qlE+++ +d++   tL+++++++ +t + l  L+ l++e                                        k+++ gg++l l
      KKY21537.1 270 RLIIQLENKVINDES--YTLHQMHLHVIPTSQSLAHLYALAQELLkknalleedldesidefdadaildrlreggdlmpgsmtKKRCIGGNVLAL 362
                     **************9..*************************9998899999999999999999999999999999999999888889******* PP

  GCP_N_terminal 146 lhe..aaqhgdpkvrkllsellervsrpflemlekWileGelsDpynEfFveenesvakeklkeddseklweekYtlrkemlPsflseelaekIl 238
                     l +  a+ +gdp++r+ll+ ll+++srp+ +ml+ W+ +G ++D ++Ef++ e + v++e+++ed+ +++we++Y +r++ +P  l++ + +k+l
      KKY21537.1 363 LTQrlATFSGDPAARSLLEMLLKEASRPYVAMLNEWLHNGGIKDRHSEFLIGERSGVKRERMDEDYTDEYWEKRYYIREKEVPPQLEA-VKDKVL 456
                     ***99999********************************************************************************.****** PP

  GCP_N_terminal 239 etGkslnflrescgdsewiekteseekeleyiddleelssslslsleelidsayklaskrllelLfk 305
                     ++Gk+ln++re+ +  + i +t+      +        +++ + ++ + i++ay +a+ +ll+lL++
      KKY21537.1 457 LAGKYLNVVREC-AGVN-ISNTNT-----NV-P-----TTFEDPRFLDNINDAYAYANASLLNLLLT 510
                     ***********6.5445.666666.....22.2.....2234678********************85 PP

>> GCP_C_terminal  Gamma tubulin complex component C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.9   0.3   4.4e-57     4e-53       1     303 [.     514     921 ..     514     926 .. 0.88

  Alignments for each domain:
  == domain 1  score: 180.9 bits;  conditional E-value: 4.4e-57
  GCP_C_terminal   1 LlehLkllkrylLlgqgdFisrLldalfdelwkpasselrlaLtslLeeairssna.qqsdelkddlsfaldlpevleeldakldpds....... 87 
                     L+++L++lk+y++l++++F+  +l++ ++el k+  +    +L+slL+ ++r+s + ++ d++k+d+s+++++  +++ l +++++++       
      KKY21537.1 514 LRSRLRSLKHYFFLDRAEFFNYFLELSASELRKSHRNVNVGKLQSLLDIVLRQSGSiAAADPFKEDVSVKMNEVGLTQWLMKIVNVQGldqdnpd 608
                     899*******************************99977779**********99876668***********9999889998666998899***** PP

  GCP_C_terminal  88 ...................legldfltLeYkvpwplslvitpealekYqriFrfLlrvkrvefalsslwkrrkatgarsvl.........lkra. 153
                                        ++g+d+l L+Y +p plslvi+++++ +Yq iFr+   ++++e+ l ++w +++++ ++ v+         +kr  
      KKY21537.1 609 smmekyqtpapaskdddkdINGFDALELDYAIPFPLSLVISRKTVLRYQLIFRYTHALRHLESMLVDCW-SEHSKVPSWVHkssvrriemWKRRa 702
                     *****************9999************************************************.5555544422233445666655545 PP

  GCP_C_terminal 154 rllrqemlhfvsqlqyYvldeviessWreleekl.kke.................................................atdldeli 198
                     ++lr++ml fv+q+  + + evie++W++l++k+ + +                                                 + ++del+
      KKY21537.1 703 WTLRARMLVFVQQMLFFATAEVIEPNWQKLMAKVdE-AeqpalesgaslpsqpqtsnpfgpnptntkptptpnpqthttpnrplkmkR-TVDELM 795
                     **********************************55.459****************************99999999999999998844.6***** PP

  GCP_C_terminal 199 eaHeafLdsilkkclLrskkkllklleeilelileFakvldglylsvselt..........................aeeaeeeeleekleerle 267
                     + H ++Lds++k++ L++  kll++ +++++ +  Fa  +++l+ +    t                          a+++++ ++  klee+l+
      KKY21537.1 796 QDHLDMLDSCMKDLGLTQG-KLLRIHSKLMTGCSMFATYTSNLSRNLY--TadpdlassssspentnnrttaspntaAAADTNPRII-KLEETLK 886
                     *******************.*****************99999663333..2336789***************998743333333444.599**** PP

  GCP_C_terminal 268 elekeFrkkvslllkvlralkeqeededlrqLllrL 303
                     ++e+ F++++++l++ l+ ++++e ++ l  L+ rL
      KKY21537.1 887 RYEDHFNRHLRILIDSLNYYAATE-TVVLLGLCARL 921
                     *****************9997777.78888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (941 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.49
# Mc/sec: 5801.30
//
Query:       KKY21538.1  [L=245]
Description: putative proteasome component pup2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-57  192.8   0.1    5.1e-57  192.4   0.1    1.1  1  Proteasome      Proteasome subunit
    1.4e-12   47.0   0.2    3.6e-12   45.7   0.0    1.8  2  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.4   0.1   5.7e-61   5.1e-57       1     189 [.      31     220 ..      31     221 .. 0.95

  Alignments for each domain:
  == domain 1  score: 192.4 bits;  conditional E-value: 5.7e-61
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHC CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrs 99 
                 +k G+t++G+++++gv+l+++kr+t  s+ll+ s+veKi++id hig+a++Gl+aDar ++++ar+e q++++ y+++++ve +++++++++++    +
  KKY21538.1  31 IKLGSTAIGVATSHGVILGVEKRVT--STLLEASSVEKIIEIDSHIGCAMSGLQADARSMIEHARVESQNHKFHYNEKLRVESCTQAICDLALRFGEGA 127
                 589**********************..******************************************************************999855 PP

                 ......TTTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEE CS
  Proteasome 100 ......grrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievav 189
                         rpfgv+lliag+de+g p+Ly+ +psG++++++ a aiGsgse a++ l+ ey+  ltleea++l++k+lk+++e +kl +kn+++a 
  KKY21538.1 128 egeesvMSRPFGVALLIAGWDEDG-PQLYHAEPSGTFYRYD-AKAIGSGSEGAQAELQTEYHRSLTLEEAETLVLKTLKQVME-EKLDSKNVQLAS 220
                 44555578*************888.***************6.*****************************************.88******9985 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0     4e-16   3.6e-12       1      23 []       8      30 ..       8      30 .. 0.98
   2 ?   -3.2   0.0      0.78     7e+03       1       6 [.     186     191 ..     183     191 .. 0.71

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 4e-16
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YDr ++tFSP+GRLfQVEY ++A
      KKY21538.1  8 YDRGINTFSPEGRLFQVEYSLEA 30
                    ********************998 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.78
  Proteasome_A_N   1 YDrslt 6  
                     Y rslt
      KKY21538.1 186 YHRSLT 191
                     777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       740  (0.0412739); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 1658.77
//
Query:       KKY21539.1  [L=544]
Description: putative rrna processing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-53  181.6   0.0    1.2e-51  175.6   0.0    3.0  3  Methyltransf_8   Hypothetical methyltransferase
    0.00013   22.5   0.0    0.00047   20.7   0.0    2.0  1  Methyltransf_11  Methyltransferase domain
     0.0039   17.9   0.0      0.081   13.6   0.0    2.4  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.044   13.8   3.4      0.093   12.8   3.4    1.5  1  PRIMA1           Proline-rich membrane anchor 1
       0.25   11.3   0.0       0.25   11.3   0.0    2.5  2  Methyltransf_32  Methyltransferase domain
        2.3    6.9   6.3        4.3    6.0   6.3    1.4  1  SAPS             SIT4 phosphatase-associated protein
        2.6    8.1   5.5        5.1    7.1   5.5    1.5  1  CAML             Calcium signal-modulating cyclophilin ligand


Domain annotation for each model (and alignments):
>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.6   0.0   4.8e-55   1.2e-51       2     166 ..     194     396 ..     193     415 .. 0.91
   2 ?    1.2   0.0       0.1   2.7e+02     167     211 ..     452     498 ..     447     506 .. 0.73
   3 ?    0.3   0.1       0.2   5.1e+02     193     219 .]     518     544 .]     501     544 .] 0.72

  Alignments for each domain:
  == domain 1  score: 175.6 bits;  conditional E-value: 4.8e-55
                     XXXXX-HHHHHHHHHHHHHHHHHS-HHHHHHHHHH-HHHHHHHHHHHHHHHC.TSSS-HHHHHHHHHC........................... CS
  Methyltransf_8   2 leakikkrldgarfrflneklytgesskavdlfkedpeafdlyhkgfrsqvk.kWPenPldviirklk........................... 68 
                     l++ ++ +l +arfr+lne lyt++sska  +f e pe+f+ yh+gf +qvk  WPenP+d+ i +lk                           
      KKY21539.1 194 LQQSMRAKLISARFRHLNEALYTTDSSKALSMFSESPELFSEYHAGFSQQVKeSWPENPVDIYIANLKdrgkipfklgkdgrpsqlsqtslgslp 288
                     7899***********************************************836***************************************** PP

                     ...TS-TTS-EEEES-TT-HHH.....HH--S-..EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEE..EE CS
  Methyltransf_8  69 ...kkkdnlvvadlGcGeakia.....eavrekekvrsfdlvavnervvacdlakvPledesvdvavfclslmgtnladflkeanrvlkvG..Gl 153
                        + ++  ++adlGcG+a +a     + ++ + k + fdl+a n+ ++  d++ +Pl+d+ +d+avfclslmgtn+ +f++ea r+l+    G 
      KKY21539.1 289 lprRPHGTCTIADLGCGDAPLArglqsSVKKLNFKFHNFDLHAANSLITKADISSLPLKDGEIDIAVFCLSLMGTNWLSFVEEAWRILRGDgrGE 383
                     **55557889************77753223334589*****************************************************762367 PP

                     EEEEEEGGG-S-H CS
  Methyltransf_8 154 lkvaevksrfesv 166
                     ++vaevksrf  v
      KKY21539.1 384 VWVAEVKSRFGRV 396
                     9*********765 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.1
                     HHHHHHHHCTTEEE..EEEE--STTEEEEEEEE-SSS-TT---GG-- CS
  Methyltransf_8 167 klfaraltklGfev..kskdlsnkqfvlfefkkvekkgkkrelglkl 211
                       f++ +++ Gf    +s++ snk+fv + f k ++    +  g+k 
      KKY21539.1 452 TGFVEVFQRRGFVLrpDSVNKSNKMFVSMIFTKSGVPTAGKWKGMKW 498
                     567788888888652268999************98766666555555 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.2
                     EEEEE-SSS-TT---GG--------XX CS
  Methyltransf_8 193 fefkkvekkgkkrelglklkpclykkr 219
                     ++   ++k+   +e +  lkpc+yk r
      KKY21539.1 518 LDQASTDKEISADEERNVLKPCVYKIR 544
                     555666777778888999*******76 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.8e-07   0.00047       2      93 ..     301     381 ..     300     384 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.8e-07
                      EET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGl 93 
                      d+GcG   la+ l+   ++v  +++     +l    a +      + +ad+++lp++d+ +D+ v   +l+   ++ ++++e++R+L+ +G+
       KKY21539.1 301 DLGCGDAPLARGLQ---SSVKKLNFKFHNFDLH---AAN----SLITKADISSLPLKDGEIDIAVFCLSLMGT-NWLSFVEEAWRILRGDGR 381
                      56666666666666...3444444333333111...111....22489************************9.6*************9996 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   3.2e-05     0.081      47      97 .]     333     380 ..     299     380 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.2e-05
                      TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  47 nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      n  + ++d+++lp++dg++D+ v +  l+++   ++  +++e++r+L+ +G
       KKY21539.1 333 NSLITKADISSLPLKDGEIDIAVFC--LSLMG-TNWLSFVEEAWRILRGDG 380
                      4446889**************9995..55555.5799**********9887 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.4   3.6e-05     0.093      12      53 ..     160     201 ..     148     210 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.6e-05
      PRIMA1  12 kvtescqeacqcrrypplpppppppppprllsltaaestvsp 53 
                 +++++  ++ + +++ p+ +pppppppp+   ++  +s+ ++
  KKY21539.1 160 SAGNNQYTTEKQKPKLPVFAPPPPPPPPKAALTPLQQSMRAK 201
                 333333344444566677789999999999888888877665 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.8   7.2         7   1.8e+04      74     104 ..     119     142 ..      72     178 .. 0.48
   2 ?   11.3   0.0   9.6e-05      0.25      23      63 ..     293     333 ..     279     344 .. 0.83

  Alignments for each domain:
  == domain 1  score: -5.8 bits;  conditional E-value: 7
  Methyltransf_32  74 lgkkfnkrlsfaelsieeatssktltkkve.................a 104
                      ++kk                         +                 +
       KKY21539.1 119 VKKKR------------------------KnedlkpkgvtndtsnqlR 142
                      22222........................0122223333232222220 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 9.6e-05
  Methyltransf_32  23 esgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeel 63 
                       +g +t++D+G+G + L++ l+++ k++++k++ +d+++++
       KKY21539.1 293 PHGTCTIADLGCGDAPLARGLQSSVKKLNFKFHNFDLHAAN 333
                      57899******************656688888888887655 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   6.3    0.0017       4.3     250     341 ..      77     174 ..      27     188 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0017
        SAPS 250 rDevrerlleeltseeealedvsdeaskeesaesedltdkdedvsleesksakd......enkesdesesdtaeesseededdasseesalaeeteek 341
                 r e +++ ++  ++  + + dv  +a+ + ++++e++t + +  +++++++ k+      ++++  +++++++++s+e++ ++ + ++++ +e++++k
  KKY21539.1  77 RKEKKNKKQRIVEDGGKRMADVAAKAPAKRDNTHENTTGESQVKKKRKNEDLKPkgvtndTSNQLRTEKKSNRQDSKEQHGKQSAGNNQYTTEKQKPK 174
                 22222222222233367777777555555555555555444444444444444432222144444444444444444444444444444455544444 PP

>> CAML  Calcium signal-modulating cyclophilin ligand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.5     0.002       5.1      49     133 ..      78     166 ..      35     172 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.002
        CAML  49 ldldkleslslssvskrv..llgdssgakdksk.sstaerkgsklpdkkdsltkesseddsaelrkrergelssd.easrsprrgleky 133
                 +++++++   ++   kr+  + +++ +++d+++ ++t+e +++k  + +d  +k +++d+s++lr+ +++++++  e++   + g ++y
  KKY21539.1  78 KEKKNKKQRIVEDGGKRMadVAAKAPAKRDNTHeNTTGESQVKKKRKNEDLKPKGVTNDTSNQLRTEKKSNRQDSkEQHGKQSAGNNQY 166
                 3334444445555566664566666555555551566777777777777777999**************99966614555556677777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1213  (0.0676558); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 3579.63
//
Query:       KKY21540.1  [L=761]
Description: putative ribosomal rna assembly protein mis3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-30  103.4   0.0    1.4e-29  102.0   0.0    1.8  1  KH_8      Krr1 KH1 domain
  ------ inclusion threshold ------
      0.086   12.7   0.0       0.41   10.5   0.0    2.2  2  KH_1      KH domain
        3.6    8.0   6.2        1.2    9.5   1.9    2.5  2  DUF4806   Domain of unknown function (DUF4806)


Domain annotation for each model (and alignments):
>> KH_8  Krr1 KH1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.0   2.3e-33   1.4e-29       1      81 []     455     535 ..     455     535 .. 0.99

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 2.3e-33
        KH_8   1 SsfevlfpkyrekylkeveekikklleekklklevdlkerslkvsTtekTrDPyiilkardlikLisrgvpleeakkvleD 81 
                 Ssf++lfpkyre ylk++++ i+k+le++ + +++dl e+s++v+Tt+kT+DP  il ardlikL+sr+vp  +a k+l+D
  KKY21540.1 455 SSFVTLFPKYRELYLKQSWPMITKALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILSARDLIKLLSRSVPAPQALKILQD 535
                 89*****************************************************************************99 PP

>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         1   6.1e+03      14      31 ..      94     112 ..      92     118 .. 0.77
   2 ?   10.5   0.0   6.8e-05      0.41      11      52 ..     558     591 ..     552     605 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1
                 HHTGGGHHHHHHHHHH.T- CS
        KH_1  14 iIGkgGsnIkeIreet.ga 31 
                 +I  + ++Ik +ree  g 
  KKY21540.1  94 LINERDQTIKMLREEVrGL 112
                 67778899**999986565 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 6.8e-05
                 HHHHHTGGGHHHHHHHHHHT-EEEEESSTT...T.-EEEEEE CS
        KH_1  11 vgriIGkgGsnIkeIreetgakIkvpksedegsderevtisG 52 
                   ri+G++Gs++k ++  t ++I v  +       ++v   G
  KKY21540.1 558 RQRILGPQGSTLKALELLTETYILVQ-G-------NTVSAMG 591
                 579*************999**99976.3.......2444445 PP

>> DUF4806  Domain of unknown function (DUF4806)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.86   5.1e+03      21      49 ..      51      83 ..      36      97 .. 0.52
   2 ?    9.5   1.9    0.0002       1.2      11      48 ..     133     170 ..     132     192 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.86
     DUF4806 21 avrtdeki.rqqyvnyLrkikgk...kadlkkv 49
                ++r++e+i  +qy + L++++     ++ ++++
  KKY21540.1 51 ELREQEQIyKSQYQALLASHRDAmnkEKIAQDA 83
                344444442555666665555444322334444 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0002
     DUF4806  11 seeelerLEaavrtdekirqqyvnyLrkikgkkadlkk 48 
                 +e+ ++ LE++v+++++  q++v++L+++ gk ++l+k
  KKY21540.1 133 QEQRIQDLEKKVQRRDERSQKLVHELAQQNGKVTKLEK 170
                 7899**************************98555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2425  (0.135256); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:00.55
# Mc/sec: 4179.09
//
Query:       KKY21541.1  [L=255]
Description: putative acetyl xylan esterase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-51  174.8   7.0    1.9e-51  174.6   7.0    1.0  1  Cutinase       Cutinase
    3.3e-05   23.5   0.2      7e-05   22.5   0.1    1.4  1  PE-PPE         PE-PPE domain
  ------ inclusion threshold ------
      0.022   14.1   0.2       0.04   13.2   0.2    1.4  1  LIP            Secretory lipase
       0.12   13.0   0.1       0.13   12.9   0.1    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
       0.15   11.3   0.0       0.21   10.8   0.0    1.2  1  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Cutinase  Cutinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.6   7.0   5.2e-55   1.9e-51       1     178 []      25     230 ..      25     230 .. 0.97

  Alignments for each domain:
  == domain 1  score: 174.6 bits;  conditional E-value: 5.2e-55
                 ---SEEEEEE--TT--TTTSSHHHHHHHHHHHH.TTT-EEEEE------CGG......STTSS-HHHHHHHHHHHHHHHHH-TT-EEEEEEETHHHHHH CS
    Cutinase   1 sckdvevifArgttepgglgsvGeavvsalesavgsksvavqgvnYpAdleq......lyegseeagakeaaalvqslaskCPdtkivlgGYSqGaqvi 93 
                 +c+dv++++A +tt ++g+gs+G++v+ +l++++gs+++a+    YpA+ ++      +y +s  +g++++a+ v+ ++s+CPdtk+vl+GYSqG+q++
  KKY21541.1  25 ACPDVHIFGACETTASPGYGSAGTVVNLILNAYPGSTAEAIS---YPACGGGsscggvSYGNSVLQGVSAVASQVNTFNSECPDTKLVLVGYSQGGQIT 120
                 6*****************************************...*****9999********************************************* PP

                 HHHHTT..............S-HHHHHHEEEEEEES-TTCCCCTT................S-TTS-GGGEEEE--TT-GGGTS----GGGG-GGGG.H CS
    Cutinase  94 dnaiegga.......tat..lpaavadkvaavvlfGdpsnvaglp................evsklyaskikslCdagDpiCgsgneleaHlsYvseyt 167
                 d+a++gg        ++t  ++a++ + ++a++l+Gdp+ + gl+                ++++++aski+s+Cda+Dp+C++g ++++H++Y+sey+
  KKY21541.1 121 DDALCGGGdtneglsSTTvpIQASAVNMIKAAILMGDPRYIYGLSyevgtctakgfdarpaGFTCPSASKIQSYCDAADPYCCNGDDAATHQGYGSEYG 219
                 ******99999999633368********************9999999999************************************************* PP

                 HHHHHHHHHH- CS
    Cutinase 168 tqaakFvvskl 178
                 ++a++Fv+skl
  KKY21541.1 220 QAALTFVKSKL 230
                 ********986 PP

>> PE-PPE  PE-PPE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   1.9e-08     7e-05       1      65 [.      58     123 ..      58     132 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.9e-08
      PE-PPE   1 PgadaelvsyPasflpvtglksltvdeSvaeGtenLeaairaela..agekvvvfGySqgalvasne 65 
                 Pg +ae++syPa     ++ + +++++Sv +G+  + + ++++++   + k+v +GySqg+ + +++
  KKY21541.1  58 PGSTAEAISYPACGGG-SSCGGVSYGNSVLQGVSAVASQVNTFNSecPDTKLVLVGYSQGGQITDDA 123
                 78999******97766.789*********************9876668999***********99876 PP

>> LIP  Secretory lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   1.1e-05      0.04      47      86 ..      81     121 ..      64     126 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
         LIP  47 sgkavLdsiraal.ksekvtgiksdakvalwGYSgGslAsa 86 
                  g++vL+++ a+  + +++ +  +d+k +l GYS+G+  + 
  KKY21541.1  81 YGNSVLQGVSAVAsQVNTFNSECPDTKLVLVGYSQGGQITD 121
                 5899******97614556677789************98765 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   3.6e-05      0.13      31      82 ..      64     123 ..      15     209 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.6e-05
                    EE--TTS.TS-GGCS--HHH.....CHHHHHHHCCTT....TTSEEEEEETCHHHHHHHH CS
  Abhydrolase_6  31 apDlpGh.Grsdpppldled.....ladlaalldelaa..gggpvvlvGHSlGGalalaa 82 
                    a+++p + G+s++   ++ +     + ++a +++ + +   + + vlvG+S+GG +   a
     KKY21541.1  64 AISYPACgGGSSCGGVSYGNsvlqgVSAVASQVNTFNSecPDTKLVLVGYSQGGQITDDA 123
                    677888865788888888886533334444455555446555666*********987763 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.7e-05      0.21      40      91 ..      70     121 ..      47     158 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.7e-05
  Hydrolase_4  40 rGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGlial 91 
                   G G s+g   + +s+ + v  +a+ v+++ +e p+++l+l+G S GG i+ 
   KKY21541.1  70 CGGGSSCGGVSYGNSVLQGVSAVASQVNTFNSECPDTKLVLVGYSQGGQITD 121
                  68999*******************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1641.22
//
Query:       KKY21542.1  [L=362]
Description: putative ser thr protein phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-11   45.3   0.0    2.4e-11   44.6   0.0    1.4  1  Metallophos    Calcineurin-like phosphoesterase
    3.3e-05   24.1   0.0    0.00015   22.0   0.0    1.9  2  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
  ------ inclusion threshold ------
      0.093   12.0   0.0       0.14   11.5   0.0    1.2  1  Metallophos_3  Metallophosphoesterase, calcineurin superfamil


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   3.9e-15   2.4e-11       2     201 ..      46     285 ..      45     288 .. 0.67

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 3.9e-15
                  EEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHHTSEEEEEC-TTS........................ CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaalvkypipvylllGNHe........................ 75 
                  r+++igD+H     g+ ++ll+ll++++ +++ d ++l+GD++  g+ + ++++   ++++      +++GNHe                        
   KKY21542.1  46 RLIFIGDIH-----GCKEELLQLLEEVKFDKRTDHLILLGDIITKGPESLDVIDVAIEMGA-----SCIRGNHEdrvlltykdmmstllplkgpnepa 133
                  7899*****.....*****************************************777777.....7******************************* PP

                  ......CHHHHHHHHHHHHHHH......HHHHEHHHCEEETSEEEEEETTE......EEEEEEESE.CEEE.........THHHHHHHHHHHSCHHHH CS
  Metallophos  76 ......gfeeellnkygylgif......sepwrsdaevfnnlplaslgsgs......lkvlllhGg.spel.........lvsldklgslnleleape 145
                        +++ee++++ +y+ +       ++ +++     +  p++             +v+ +h+g  p++           +  +++ ++++     
   KKY21542.1 134 slggvdNLDEESFSQGDYSDRAlarrlkKKHYNYL----SSCPVILR---VgrigklGEVVAVHAGmVPGIslelqdpysVMTMRSIDLVSHIPSKLP 224
                  *9988866666666666666655533322222222....22222222...12234567999*****95555555566444444444444444444444 PP

                  CC.....HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHHHHHHHHHTT.....ESEEEEESS CS
  Metallophos 146 pg.....dewlkdlekrekadwvivlgHsplyrgsgylfgdealedllkkyg.....vdlvisGHt 201
                  p+     + + +d    +  +  +++++  l++++++l +++  +  + +++        vi+GH+
   KKY21542.1 225 PKdhvgkYTLNSD---ADAEKHQYLISWTKLWNKYQNLIPNPKRA--FSRGNkepelHTTVIYGHD 285
                  4344455555555...77777788888888884444444444444..3333333334445788886 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.5e-08   0.00015       2      66 ..      46     115 ..      46     166 .. 0.76
   2 ?   -0.6   0.0      0.22   1.3e+03     116     136 ..     274     294 ..     236     314 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.5e-08
  Metallophos_2   2 klaiiSDlHsnldaleavlealke.vgvdaiihaGDleeeepevleellela..pvlaVrGNnDeev..v 66 
                    +l++i D+H+  ++l ++le++k   + d++i++GD+ ++ pe+l+ +          +rGN++++v   
     KKY21542.1  46 RLIFIGDIHGCKEELLQLLEEVKFdKRTDHLILLGDIITKGPESLDVIDVAIemGASCIRGNHEDRVllT 115
                    5789**************9999854779********9555554443333332449999******443332 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.22
  Metallophos_2 116 eegsdvvvcGHtHvpevekeg 136
                     e ++ v++GH  +++++ ++
     KKY21542.1 274 PELHTTVIYGHDSKQGLQIQK 294
                    44556999**98887766655 PP

>> Metallophos_3  Metallophosphoesterase, calcineurin superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.3e-05      0.14       5      47 ..      44      87 ..      41     123 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.3e-05
                   --EEEEEE--TT-GGGHHHHHHHHH.HH--SEEEEES-----HH CS
  Metallophos_3  5 vrkvlaisdlkgevellerlvevie.dkdpDllvlvGdlvkaea 47
                   +r+++ i d++g  e l +l+e ++ dk +D l+l+Gd++ ++ 
     KKY21542.1 44 SRRLIFIGDIHGCKEELLQLLEEVKfDKRTDHLILLGDIITKGP 87
                   58999999***987766666655544*************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2502.54
//
Query:       KKY21543.1  [L=495]
Description: putative alpha-mannosyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-76  257.1   0.0    1.8e-76  256.7   0.0    1.1  1  DUF3445   Protein of unknown function (DUF3445)


Domain annotation for each model (and alignments):
>> DUF3445  Protein of unknown function (DUF3445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.7   0.0     1e-80   1.8e-76       2     224 ..     181     416 ..     180     417 .. 0.92

  Alignments for each domain:
  == domain 1  score: 256.7 bits;  conditional E-value: 1e-80
     DUF3445   2 lrkldpsewieldktYkerieerrrlleehgekvlavlpeaeaavkElleelveyLparYPqlFelskkkt.lenkvtgetfel...eplevlarlvqe 96 
                 l+kl+p++w+el++tYk+ri++r+ l+e++g+ vl++lp++e a+kEl+e+ +++L+arYPq+Fel+++k+ ++n++++++ ++   +pl vl  +v+e
  KKY21543.1 181 LTKLEPDWWLELESTYKARIAQRKGLYEKYGKLVLQYLPGSELACKELMEMALQFLCARYPQYFELGSDKKtFKNRILETEQDVsakHPLLVLLDNVPE 279
                 789***************************************************************555555*******999996544*********** PP

     DUF3445  97 Dllillen..dgeyyleAgvvcfpagwdlreklgkpLseiHepVpgykekleksmerffarlepgkpvkRvnwsiqtddelfwase......ee.eeee 186
                 D++i l+n  dg yy++Agv+c++ gw++++k+g++L++iH+p+p+yk+k+e sm+rff++++ ++p++R +w++++d++lf+++       +e + ++
  KKY21543.1 280 DFAITLRNpeDGYYYFRAGVICSALGWNVNTKIGMSLKDIHKPIPDYKQKMEFSMDRFFSKMPIDRPIQRGSWGLEVDKPLFMPPGdphekyREyQAQD 378
                 *******965555*********************************************************************83335877664445566 PP

     DUF3445 187 ldieelflRvErQtLrRLpksgaivFtirtyltpleel 224
                 l++++++lRv++QtLrRLp sg+ivF++++++ p+ee+
  KKY21543.1 379 LTLDRCHLRVDWQTLRRLPYSGGIVFNFKAVFSPVEEF 416
                 88*********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3260.52
//
Query:       KKY21544.1  [L=360]
Description: putative hco3transporter family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-36  125.6   0.1    3.1e-36  125.3   0.1    1.1  1  HCO3_cotransp  HCO3- transporter family


Domain annotation for each model (and alignments):
>> HCO3_cotransp  HCO3- transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.3   0.1   1.7e-40   3.1e-36     259     489 ..       4     248 ..       1     273 [. 0.87

  Alignments for each domain:
  == domain 1  score: 125.3 bits;  conditional E-value: 1.7e-40
  HCO3_cotransp 259 alfLkkfkk.srflptkvRelisDfavliailvmvl...vdvllgvetpklevpeefkptsekrgwlinpleknpwwlvlaavlpallvtiLifmd 350
                    a+fL +  + ++ +++ vR  ++++a  i+i+v++    v+ l+++++++l+v+++f+pts++r++++  + ++p+ +++aa++p+ ++t L+f d
     KKY21544.1   4 AIFLSTAENwKPLFHRYVRLGLTEYAAAISIVVFIGlphVGELAQLDKSTLQVSTSFRPTSPDRSHFFVHFWNLPVAWIFAAIIPGAIITALFFFD 99 
                    56666665536799*******************99722256667799***************9999999*************************** PP

  HCO3_cotransp 351 qqitavivnrkenkLkKgsgyhlDLlvvavlilvlsllGlPwlvaatvlsitHvnslkvesetsa....pGe....kpkilgvrEqRvtgllvf.. 436
                    ++++++i        +K  g+ +D+++++++++++++lG+P   + ++++++H +sl   ++ ++     Ge    k+++ +v EqR ++ll +  
     KKY21544.1 100 HEVSSIICTIDRYGTRKPGGFAWDIVLLGTTTALCGILGIPPANGLLPQAPLHSESLMHAEKEQQtiivDGEeklsKKEVRRVYEQRWSTLLHAag 195
                    ********************************************************987665543222279523335789999*******986622 PP

  HCO3_cotransp 437 iliglsvlltpvlklIPmpVLyGvFLYmgvtsLkgiqlfdRilLllmpakhqp 489
                    il  +s  l++vl l P++VL G+FL+mg  sL+ + ++ R   +l+p  + p
     KKY21544.1 196 ILAFVSPPLMRVLGLTPTSVLAGLFLFMGEQSLSVNPILYRTFYMLTPPSELP 248
                    67777778*************************************99998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.34s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 2201.47
//
Query:       KKY21545.1  [L=310]
Description: putative mitochondrial gtpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-14   53.5   0.0    3.7e-14   52.8   0.0    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
    2.6e-06   27.5   0.2    7.3e-06   26.0   0.2    1.6  1  RsgA_GTPase  RsgA GTPase
     0.0001   21.9   0.0    0.00016   21.2   0.0    1.3  1  FeoB_N       Ferrous iron transport protein B
     0.0055   15.8   0.1     0.0082   15.2   0.1    1.2  1  IIGP         Interferon-inducible GTPase (IIGP)
  ------ inclusion threshold ------
      0.011   15.0   0.0      0.018   14.4   0.0    1.2  1  Septin       Septin
      0.021   14.1   0.0      0.033   13.5   0.0    1.3  1  AIG1         AIG1 family
      0.041   13.6   0.0      0.089   12.5   0.0    1.5  1  AAA_29       P-loop containing region of AAA domain
      0.089   13.0   0.1       0.19   12.0   0.1    1.6  1  Roc          Ras of Complex, Roc, domain of DAPkinase
       0.11   12.6   0.4       0.64   10.1   0.1    2.2  2  Dynamin_N    Dynamin family


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   1.8e-17   3.7e-14       2      72 ..     103     185 ..     102     238 .. 0.61

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 1.8e-17
                 EEEEESTTSSHHHHHHHHHT......STEEESSSTTSSSSEEEEEEE....ETT.EEEEEEECGGCS....SHHHHHHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg......ekaivsdkpgtTrdinegrvk....lkg.keielvDtpGli....egaseekglgkafla 72 
                 ++ivG+pNvGKS+L+nal        ++a+++d+pg Tr+i +   k     +g   ++++DtpG++       + e +l+ a++ 
  KKY21545.1 103 MMIVGMPNVGKSSLLNALRSvgvggkKAAKTGDQPGITRKIATSV-KiiegQDGqGGVYVLDTPGVFvpymP--DAESMLKLALCG 185
                 79****************74334443489************6663.32234222345********7533331..333333333333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.2   3.7e-09   7.3e-06      49     161 ..      37     167 ..      10     171 .. 0.69

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 3.7e-09
                  EEEEEE-GGG--HHHHHHH.HHHHHHHTT..SEEEE--TTTH..........TTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT-..----S--- CS
  RsgA_GTPase  49 pvivlnKiDlleeeeelee.lkeelealg..yevllvsaktk..........egleelkellkdktsvlvGqSGvGKStLinallpel..elktgevs 131
                   +iv +K Dl ++++++++  +e +++++   + ++ +ak++          + ++e+++ + ++ +++vG   vGKS+L+nal++      k +++ 
   KKY21545.1  37 RLIVYTKQDLGSNRTAIDRrREEIIREWDrpSNAMFANAKNRftvqkildfaRRHSEVSHSILGSRMMIVGMPNVGKSSLLNALRSVGvgGKKAAKTG 134
                  468889999988888554413445666763334556666665111111111133445555666677899****************9541266777777 PP

                  -----------SEEEEEETT...TEEEESS-SS CS
  RsgA_GTPase 132 eklgrGkhTTtavellelae...gglliDtPGf 161
                  ++ g  +   t+v+++e ++   g ++ DtPG+
   KKY21545.1 135 DQPGITRKIATSVKIIEGQDgqgGVYVLDTPGV 167
                  788888**********9998665779******7 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   8.1e-08   0.00016       3      58 ..     103     168 ..     101     196 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 8.1e-08
                 EEEEESTTSSHHHHHHHHH......TTSEEEEESTTSSSEEEEEEEEETT....EEEEEEE----S CS
      FeoB_N   3 valvGnpnvGkttlfnalt......gakqkvgNwpGvtvekkegklklkg....keveivDlPGiY 58 
                 +++vG pnvGk++l+nal       ++  k g  pG+t + ++    ++g      v ++D PG++
  KKY21545.1 103 MMIVGMPNVGKSSLLNALRsvgvggKKAAKTGDQPGITRKIATSVKIIEGqdgqGGVYVLDTPGVF 168
                 789**************9633232134589********776655443333112256899*****98 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   4.1e-06    0.0082      38      69 ..     103     134 ..      77     144 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.1e-06
                 EEEEESTTSSHHHHHHHHTT--TTSTTS--SS CS
        IIGP  38 iavtGdsGnGkssFinaLRliGheeedsAptG 69 
                 ++++G    Gkss +naLR +G   +++A+tG
  KKY21545.1 103 MMIVGMPNVGKSSLLNALRSVGVGGKKAAKTG 134
                 678899999**********************9 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   8.9e-06     0.018       7      71 ..     103     166 ..      99     170 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.9e-06
                 EEEEEBTTSSCCCCCCTTSSSS------------------S-EEEEEEEEETTCEEEEEEEE--- CS
      Septin   7 lmvvGesglGkttlintlfetdlieeekleeasekkkktveikkkkvvieedgvklnltviDtpg 71 
                 +m+vG   +Gk++l+n+l +  +  ++  ++  ++   t +i ++ ++ie+++ +  + v+Dtpg
  KKY21545.1 103 MMIVGMPNVGKSSLLNALRSVGVGGKKAAKT-GDQPGITRKIATSVKIIEGQDGQGGVYVLDTPG 166
                 8*****************9999998876655.56667899************************9 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.7e-05     0.033       2      62 ..     102     170 ..     101     209 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.7e-05
                 EEEEESSTTSSHHHHHHHH....HTS--SS--TTTS---SS-EEEEEEETTEE....EEEEE--SCCCT CS
        AIG1   2 tivlvGktgnGkSaTgNsi....lgkkaFesklsaqsvtkkcqkksrtwdgkk....inViDTPglfdl 62 
                 ++++vG   +GkS+  N++    +g k       + ++t+k  ++++  +g++    + V DTPg+f  
  KKY21545.1 102 RMMIVGMPNVGKSSLLNALrsvgVGGKKAAKTGDQPGITRKIATSVKIIEGQDgqggVYVLDTPGVFVP 170
                 6899**************999997777777777999*******99998887644445********9854 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.5e-05     0.089      23      51 ..     100     129 ..      87     133 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.5e-05
      AAA_29  23 g.atlltGpsGsGKSTllDAiqalLvpakk 51 
                 g  ++++G   +GKS+ll A+  + v+ kk
  KKY21545.1 100 GsRMMIVGMPNVGKSSLLNALRSVGVGGKK 129
                 5579*****************999888775 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   9.4e-05      0.19       1      34 [.     102     135 ..     102     166 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.4e-05
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTE CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigv 34 
                 ++++vG  +vGK+sll+ + +  +  k+ + +g 
  KKY21545.1 102 RMMIVGMPNVGKSSLLNALRSVGVGGKKAAKTGD 135
                 589**************99887776666665554 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00032      0.64       2      19 ..     104     121 ..     103     142 .. 0.89
   2 ?   -0.6   0.0       0.6   1.2e+03     101     115 ..     157     171 ..     152     202 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00032
                 EEEEBTTTTHHHHHHHHH CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLl 19 
                 ++vG+ + GKSS+lnaL 
  KKY21545.1 104 MIVGMPNVGKSSLLNALR 121
                 689*************95 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.6
                 -SEEEEE---B-SSS CS
   Dynamin_N 101 kgltlvDlPGldsvn 115
                  g+ ++D+PG+    
  KKY21545.1 157 GGVYVLDTPGVFVPY 171
                 578899****97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 1994.59
//
Query:       KKY21546.1  [L=266]
Description: putative pre-mrna-splicing factor isy1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-86  287.7   0.4      1e-85  287.4   0.4    1.1  1  Isy1      Isy1-like splicing family


Domain annotation for each model (and alignments):
>> Isy1  Isy1-like splicing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.4   0.4   5.6e-90     1e-85       2     255 .]      18     264 ..      17     264 .. 0.91

  Alignments for each domain:
  == domain 1  score: 287.4 bits;  conditional E-value: 5.6e-90
        Isy1   2 aRneEKaqsmLnRfreakaeekgllekkr.rRPklasevkslkeaekwrrqvirEIsrkvakIqdaglgeyqiRdlNDeiNkLlrekrhWekrIkeLgG 99 
                 aRn+EKaqsmL+Rfr+a+a+++g+l+++r rRPkl+++v++++ +ekwr+qv++EIsrkv++Iqd++l++yqiRdlNDeiNkL++ek++We++I+eLgG
  KKY21546.1  18 ARNSEKAQSMLFRFRAAQAADLGILDTSRtRRPKLITSVTTIPVCEKWRGQVLKEISRKVTRIQDESLSDYQIRDLNDEINKLMKEKWMWERQIRELGG 116
                 9*************************9999********************************************************************* PP

        Isy1 100 pdykrkapkmldeegkevpgk.kgyrYFGrAkeLPgVkelfekek......kkee..kkkkerael.fknidadYYGy.rdeedgvlleleaeaekear 187
                 p+y+r + k++d+eg+e+pg  kgyrYFGrA+eLPgVke+fe+++      ++ee   ++k  ++l +k++da+Y+Gy  deedg+ll++e+++e+ea+
  KKY21546.1 117 PNYMR-GSKIYDDEGREIPGGgKGYRYFGRARELPGVKEMFERAAkravhgDDEEgpGTSKPGNDLaRKHVDAAYFGYgLDEEDGTLLRYEKRKEREAV 214
                 *****.8***********9988*********************997777763333232233334445999********88999**************** PP

        Isy1 188 eeavwkeekeeeeeeeekekeeeeeeeeeeeeseeekkefvalhvpvpsqeeiekallekkKkeLlek 255
                 e+  +              +++e e ++e  + +++++ +++    +p+ ee+++ l+++++k+Ll+k
  KKY21546.1 215 ERLSA--------------QTDELEPTWEPLPGDAGDGLAWR----LPTVEEVQEELVDRQRKRLLDK 264
                 99983..............334567889**********9999....*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       871  (0.0485805); expected 358.6 (0.02)
Passed bias filter:                      658  (0.0367003); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.50
# Mc/sec: 1603.37
//
Query:       KKY21547.1  [L=1431]
Description: putative rho guanyl nucleotide exchange [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-63  214.7   0.0    2.7e-63  214.2   0.0    1.2  1  CNH       CNH domain
      2e-31  109.6   0.0    3.6e-31  108.8   0.0    1.4  1  RhoGEF    RhoGEF domain
    7.3e-10   39.1   0.0    2.3e-07   31.0   0.0    2.6  1  PH_5      Pleckstrin homology domain
     0.0027   18.2   0.1      0.034   14.7   0.0    2.7  3  PH        PH domain


Domain annotation for each model (and alignments):
>> CNH  CNH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.2   0.0     6e-67   2.7e-63       9     274 ..    1081    1374 ..    1074    1375 .. 0.97

  Alignments for each domain:
  == domain 1  score: 214.2 bits;  conditional E-value: 6e-67
         CNH    9 rlllGteeGlyllnlsdeskpvkieklssvtqlaVleelnlllllsdkqLyvydlsaLeekeees.qlakkksenltqklpetkgchffairngysk 104 
                   +++Gt++G+yl+++++++++++ + l++v+q+ Vlee+n++l++sdk+L++y+l+++++ + +  ++a +  ++ +qkl+ t+++ ff   +g++k
  KKY21547.1 1081 MCAVGTDYGVYLSEYDNPRGWARSIPLHRVSQVTVLEEFNIFLIISDKSLIAYPLDSVCSPSPNYvPQADSSTRRPPQKLSGTREVGFFV--TGRMK 1175
                  679***********************************************************9999989999999***************..***** PP

         CNH  105 ekfLvvavks.....kivllewneplkkfk.................kklrefqvpaevfsisvlkpklcvgvakgFelvnldegaaeslldpedns 179 
                  ++ Lv+++k+     ++++le++ +++  +                 ++++ef++pa ++s+++++++l++++++g e+++ld++ + s++ +++ +
  KKY21547.1 1176 DRGLVFYKKKdglssTFKVLEPVLQKSTTSrtrflptsgrrghteffREYDEFYIPADCYSLNLFHSSLAISTSRGVEVLTLDKKVPFSVPILKADQ 1272
                  ************************988888************************************************************9888888 PP

         CNH  180 .......ldfaarkenlkplaviqisedefLlcydefavyvdlqGrrsrdseleWegkPesvaclepyllafhknfieirsvetgelvqeisgkklr 269 
                          ++a+r ++++pl+++++se efL+c++e+avyv+++G+ sr+  le+ g ++s +++  +++ fh++f+eir+  tg+l q+isg++++
  KKY21547.1 1273 pdaqahlSSIASRIKDQRPLGMFRLSEAEFLVCFEECAVYVNKHGDVSRSVLLEFVGYAKSACLFGEHIILFHDDFVEIRNSLTGRLKQVISGRDIK 1369
                  8999**999**************************************************************************************** PP

         CNH  270 fllsg 274 
                  +l++g
  KKY21547.1 1370 CLDDG 1374
                  **986 PP

>> RhoGEF  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.0   7.9e-35   3.6e-31       1     182 []     588     774 ..     588     774 .. 0.92

  Alignments for each domain:
  == domain 1  score: 108.8 bits;  conditional E-value: 7.9e-35
                 HHHHHHHHHHHHHHHHHHHHHHTHCCCHHCT..CCHHHHHH....HHCTTHHHHHHHHHHHHHHHHHHHH.HHHTTSS-S-SHHHHHHHHSTHHH.HHH CS
      RhoGEF   1 vikElleTErsYvrdLkvlvevylkplsele..vlseeeik....iiFsnieeilelhrsflleeLeerlkeseeqkeaqsigdvflkfadkfkk.Yse 92 
                 +++E+++TE  Y+++L vl   y++ l + +  +++++ +      +F+ ++e+ +++++fll +L+ r+  +e+  +++ +gd+f+++++k k  Y +
  KKY21547.1 588 ILHEIVTTEDGYIEQLDVLRLLYRDRLLSFQppIIPAKRLAgfihDVFGRVDELKRVNEDFLLGQLKYRQ--EEQGPWIVGFGDIFREWIRKAKLaYIN 684
                 689*********************6555455676666655555449***********************9..6899999***********998856*** PP

                 HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGTT--HHHHTTHHHHHHHHHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHHHHHHH CS
      RhoGEF  93 YcsnypnalkllkelskknkkfkafleeaeerpecskldLeslLikPvqRlprYpLLLkellkntpeshpdyealkkaleaikevaseiN 182
                 Y + +p a +l++ + ++n +f++fle+a+ +++ ++l  +++L +P+ Rl rY LLL+++ k ++ +++++  l+ a+++i+ v+ e+N
  KKY21547.1 685 YATGFPIANQLVRYEAERNITFRHFLEQARDDKRSKRLAWDTYLKTPITRLQRYGLLLQTVHKTMKGESEEKTFLQFAIDEIRAVTFECN 774
                 *************************************************************************************99988 PP

>> PH_5  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   5.1e-11   2.3e-07       4     133 ..     816     995 ..     813     997 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 5.1e-11
        PH_5   4 kgtlkkketsksesadiqvyLfDhalLlvkiktvn......kreqykvyrrPiPLeLLvvseaedvpkkkgl...........kkrks........... 74 
                 +g l + ++   +  d  + LfDh+++l k+ +++      k + y v + PiP+ LLv+ +++d p  k++           +   +           
  KKY21547.1 816 QGDLLRAGGRGLQWVDTRAILFDHYFVLAKALSTKdsaggvKYDYYDVSKFPIPMDLLVLESMDDDPVVKSSvkgigavtsavS---Trpqlgasgsav 911
                 66666666666666689999**********9776534444577899999****************9999888677777666552...044467777777 PP

        PH_5  75 ..........................sslikkkksssnlvlvpekaekkkgyaitflhlGkkgyeltLyastlaarqkwlekiek 133
                                           +s+ + k+  +++vl ++++++k +y++ ++hlGk     tLya ++++rq+w e+i +
  KKY21547.1 912 rtnsapgapqnqithtntnissgnsgTSIPSAKSMIATTVLDSSSKDEKVMYPFRVKHLGKTDV-YTLYAFSASNRQEWCEAIVS 995
                 78888999999999999999998886666666666777777888889999**********9987.59**************9965 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.44     2e+03       1      34 [.     813     845 ..     813     863 .. 0.83
   2 !   14.7   0.0   7.5e-06     0.034      54     103 ..     946     996 ..     929     998 .. 0.78
   3 ?   -3.4   0.0       3.2   1.4e+04      29      36 ..    1174    1185 ..    1156    1200 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.44
                 EEEEEEEEEETSSSSCSEEEEEEEEETTEEEEES CS
          PH   1 vvkeGwLlkkgsgkkkswkkrwfvLkdsellyyk 34 
                 v+++G Ll+ g++   +w +  ++L+d  +++ k
  KKY21547.1 813 VIIQGDLLRAGGRGL-QWVDTRAILFDHYFVLAK 845
                 6799*******9999.***999999988877665 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 7.5e-06
                 EEEEEEC...TTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHHHHHHH CS
          PH  54 evvevva...tedpkrkfcfelriverngsrtyllqasseeerkeWikaiqsa 103
                  +  +v    ++d+k  + f++++   +++++y+l+a s++ r+eW++ai s+
  KKY21547.1 946 MIATTVLdssSKDEKVMYPFRVKHL--GKTDVYTLYAFSASNRQEWCEAIVST 996
                 4443333554779999999999888..778********************875 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.2
                  E....EEEESST CS
          PH   29 e....llyyknd 36  
                       l++yk++
  KKY21547.1 1174 MkdrgLVFYKKK 1185
                  345569999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.24s 00:00:00.93 Elapsed: 00:00:00.39
# Mc/sec: 11035.11
//
Query:       KKY21548.1  [L=940]
Description: putative gtpase activating protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-46  157.7   0.0    4.8e-46  157.1   0.0    1.3  1  RabGAP-TBC  Rab-GTPase-TBC domain
     0.0034   17.2   0.1      0.052   13.5   0.1    2.9  2  EF-hand_6   EF-hand domain


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.1   0.0   5.3e-50   4.8e-46       2     215 .]     136     340 ..     135     340 .. 0.90

  Alignments for each domain:
  == domain 1  score: 157.1 bits;  conditional E-value: 5.3e-50
  RabGAP-TBC   2 elRgevWklllgyepevkrlkksekkqeksekeksklekseeskelsqIkkDvprtfpesesfknkqgqnqLeriLkaysiynpevgYcqGmndivapl 100
                 +lRge+W++ +g++  + rl     +q k  ++   + + +es  +  I+kD++r++pe + f++++g   L+r+L ays+ n++vgYcq mn +va l
  KKY21548.1 136 QLRGEIWEISSGSL--YMRL-----RQPKLYTDTLSEFSGRESLAIDEIEKDLNRSLPEYAGFQSEEGIGRLRRVLTAYSWTNEQVGYCQAMNIVVAAL 227
                 79***********4..3333.....333333333444444445559************99*************************************** PP

  RabGAP-TBC 101 llvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeegldlelfaikwfltlflrefpletvlrlwD.lllegekfv 198
                 l ++ +e++aF++++ L+ +  ++ +y++++ g+  ++kv+e l++k++p l++hl + +++l++ +++wfl l+++++pl  ++r++D ++leg+k+ 
  KKY21548.1 228 L-IYISESQAFFLLSVLC-DRLVPGYYSTTMYGTLLDQKVFESLVEKTMPILWEHLVKSDVQLSVVSLPWFLSLYINSMPLVFAFRVLDvFFLEGPKV- 323
                 *.999*************.99***********************************999******************************9999***99. PP

  RabGAP-TBC 199 llrvalailklleeell 215
                 l++v+lail+ + eell
  KKY21548.1 324 LFQVGLAILRVNGEELL 340
                 ***********999986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.25   2.3e+03       2      23 ..     548     569 ..     547     575 .. 0.83
   2 !   13.5   0.1   5.8e-06     0.052       4      22 ..     587     605 ..     584     610 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.25
   EF-hand_6   2 lreaFklfDkdgdGkidaeElr 23 
                 +r++++++  dg++ i+ + ++
  KKY21548.1 548 MRRLYQKWNSDGSNGISLQNVV 569
                 899999********99987665 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 5.8e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeEl 22 
                 ++F+l+D+ gdGk+d+e +
  KKY21548.1 587 YFFDLYDNGGDGKVDREGI 605
                 89*************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (940 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.50
# Mc/sec: 5641.61
//
Query:       KKY21549.1  [L=249]
Description: hypothetical protein UCRPC4_g03653 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-39  132.8   0.0    7.2e-39  132.5   0.0    1.1  1  Erf4      Golgin subfamily A member 7/ERF4 family


Domain annotation for each model (and alignments):
>> Erf4  Golgin subfamily A member 7/ERF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.5   0.0     4e-43   7.2e-39       1     116 []     114     230 ..     114     230 .. 0.99

  Alignments for each domain:
  == domain 1  score: 132.5 bits;  conditional E-value: 4e-43
        Erf4   1 ivripRdyst.gdlapqFstllppeLsgyiseeefeeiinkiNeilaeafspysvrnildnvlglltlylwslvlkthykkklkklekyieelNeelfk 98 
                 i+ri+Rd+++ gdlap+Fs+l+p++L++++ e++f+++++k+Ne l  af+pys rn++d+vlgllt+++w++++ + +k++lk le+++e++N +   
  KKY21549.1 114 IIRIRRDWMVkGDLAPTFSNLYPEILDPMMPEDQFRSLVSKVNETLTAAFDPYSARNMVDSVLGLLTGWVWDDLGLASVKSRLKALEAWVEQWNMQYGV 212
                 8************************************************************************************************** PP

        Erf4  99 erglkiisprrsgylsld 116
                 ++g+kii++rr+gy +ld
  KKY21549.1 213 REGVKIIPLRRTGYTTLD 230
                 ***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 1617.68
//
Query:       KKY21550.1  [L=626]
Description: hypothetical protein UCRPC4_g03654 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
        0.3   11.6   1.9       0.99   10.0   1.1    2.2  2  Syntaxin-6_N  Syntaxin 6, N-terminal
        9.1    6.8   8.9       0.81   10.2   2.5    2.4  2  UPF0449       Uncharacterised protein family UPF0449


Domain annotation for each model (and alignments):
>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.19   1.7e+03      34      65 ..     393     424 ..     370     444 .. 0.62
   2 ?   10.0   1.1   0.00011      0.99      16      71 ..     429     484 ..     418     517 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.19
  Syntaxin-6_N  34 stseeldetrteLrkalrsiewdledLeetvr 65 
                    + e+++e ++    +l ++   +e+Le  ++
    KKY21550.1 393 VNPESMSESSKPSSDELIDLAHRIEELETHIA 424
                   44666677777777777788888888888773 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00011
  Syntaxin-6_N  16 kaeslyrrwerlledtssstseeldetrteLrkalrsiewdledLeetvriveknp 71 
                   +ae+  +    + ++ +s++++++  ++ +L ++ + ++ dl+ L+++vr  ek  
    KKY21550.1 429 QAEKAASANIATATTDESKSTPSSPMATADLTTTTDAMQSDLSALNRAVRRYEKRL 484
                   4444444432223333335799999************************9888843 PP

>> UPF0449  Uncharacterised protein family UPF0449
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.5     9e-05      0.81       7      55 ..     262     311 ..     257     330 .. 0.71
   2 ?   -0.9   0.3      0.25   2.3e+03      49      83 ..     468     504 ..     428     518 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9e-05
     UPF0449   7 ptRPepPtveqileDvenapedDvvftilsdsve.edkkassseeedlea 55 
                 p+ P pP ++ ile  e+   dD+++ + ++    ed k+s++++ + ++
  KKY21550.1 262 PDHPYPPMFDPILEEDEKEDSDDPALASSQELPVpEDRKQSHEKQIKPNS 311
                 899***********************998886556776666644433332 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.25
     UPF0449  49 eeedleaeveelYeqvrtylel..nerLeeakeeLkq 83 
                 ++++  + + ++Ye+  ++l+l  ++r++  +++L++
  KKY21550.1 468 SDLSALNRAVRRYEKRLALLSLqsDTRIQDLESKLQD 504
                 2333333455666666665544114666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1067  (0.0595125); expected 358.6 (0.02)
Passed bias filter:                      595  (0.0331865); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 3798.06
//
Query:       KKY21551.1  [L=424]
Description: putative serine threonine-protein kinase prkx [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-63  213.1   0.0    5.4e-63  212.8   0.0    1.1  1  Pkinase         Protein kinase domain
    1.6e-33  116.1   0.0    2.1e-33  115.7   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    0.00043   19.3   0.0    0.00061   18.8   0.0    1.2  1  Haspin_kinase   Haspin like kinase domain
     0.0036   17.2   0.0     0.0099   15.8   0.0    1.6  2  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.013   14.8   0.0      0.033   13.5   0.0    1.6  2  Kinase-like     Kinase-like
      0.016   14.0   0.0      0.027   13.3   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
      0.055   13.6   0.7      0.084   13.0   0.7    1.4  1  DUF5094         Domain of unknown function (DUF5094)


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.8   0.0   2.1e-66   5.4e-63       2     264 .]      96     363 ..      95     363 .. 0.90

  Alignments for each domain:
  == domain 1  score: 212.8 bits;  conditional E-value: 2.1e-66
                 EEEEEEEEESSEEEEEEE.....ETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHS CS
     Pkinase   2 ekleklGeGsfGkVykav.....eketgkivAvKkikkekakkkke.kkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkg 93 
                 + ++++G+G+f++V  a+     e++++k +A+K+++k +  k k+ ++v++E + l  +  hp+i +l+ +f++++ ly++l+y++gge++++l++ +
  KKY21551.1  96 QLMKTVGTGTFARVWLARfadskEEDNDKVFALKVLRKVDVIKLKQvEHVRNERNNLGAVAgHPFITTLITSFSDDQCLYMLLNYCPGGEVFSYLRKAK 194
                 67899*********7764222227788999*************9999*************99**********************************999 PP

                 S--HH.HHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHH CS
     Pkinase  94 slsee.eakkiakqilegleylH.skgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyel 190
                  ++e+ ++  +a++i+  le+lH ++gi +rDlKpeNiL+d +g++Ki+DFG+ake++ ++ + + +gt+eYlAPEv+k+++++k+vD+W+lG+++ye+
  KKY21551.1 195 RFPERpHTVLYAAEIVLVLEFLHnAHGIAYRDLKPENILLDAEGHIKIVDFGFAKEIHDRE-TYTLCGTPEYLAPEVIKNSGHGKAVDWWALGILIYEF 292
                 9999856779*************7788********************************99.99*********************************** PP

                 HHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH....HHHTTS-HHHHHHHHHHT-SSGCCSTT.....HHHHHTSGGG CS
     Pkinase 191 ltgkppfsgekgkekvekeldqlekilkilgetkekl.peaseiseeakdllkkllkkdpkkRlt.....aeellqhpyl 264
                 + g+ppf++++    +e+++             ++ +  +  ++se+akdl++ l+k++p++Rl+     a+ +++h+++
  KKY21551.1 293 IVGQPPFWDSNPLRIYEQIVAG---------RLRFPSpSHSLKVSESAKDLIQGLCKVEPTERLGyiaggAQRVKDHEFF 363
                 ********77777766666666.........3333330444577*********************999999999999997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7   0.0   8.3e-37   2.1e-33       2     249 ..      96     346 ..      95     349 .. 0.86

  Alignments for each domain:
  == domain 1  score: 115.7 bits;  conditional E-value: 8.3e-37
                  EEEEEEEEESSEEEEEEEEET.TTTSSEEEEEEEEEST..TSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkg.ekekkevkVavKtlke..eateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkk 95 
                  +l k++G G+f++V+ ++  + ++e+++   a+K+l++    + ++ e++ +e + + ++  hp i  l+   ++++ l+++++y++gG++ ++Lrk 
   KKY21551.1  96 QLMKTVGTGTFARVWLARFADsKEEDNDKVFALKVLRKvdVIKLKQVEHVRNERNNLGAVaGHPFITTLITSFSDDQCLYMLLNYCPGGEVFSYLRKA 193
                  6899***************9944555555569****7522456677899999********9************************************9 PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTT.EEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHH CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskk.lvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfG 192
                   k+  +  +++ +a+++   +e+L++ + +  rdl   N+Ll+ + ++ki DfG a++i+++++y+         +++apE++k++   ++ D W+ G
   KKY21551.1 194 -KRFPERPHTVLYAAEIVLVLEFLHNAHgIAYRDLKPENILLDAEGHIKIVDFGFAKEIHDRETYTLC----GTPEYLAPEVIKNSGHGKAVDWWALG 286
                  .9999********************9884679***************************777777544....4679********************** PP

                  HHHHHHHTTSSGTTTTSHHHHHHHHH.HTTEES-BBTT...SBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr 193 vllwEiftlgespypglkneevlekl.kegkrlekpek...cpeelyelmkkcweedpeeR 249
                  +l++E +  g+ p+++ ++ +++e++   + r + p++   ++e+ ++l++   + +p+eR
   KKY21551.1 287 ILIYEFIV-GQPPFWDSNPLRIYEQIvAGRLRFPSPSHslkVSESAKDLIQGLCKVEPTER 346
                  *****998.****************956667899888622245666777777777777666 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.4e-07   0.00061     108     255 ..      89     249 ..      51     260 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.4e-07
  Haspin_kinase 108 d............seklssevyqtke..kdkevvlKviplevledvtiskelslkelkslklvkgtypglllllqdkvlkekpdfyseqqlflvll 189
                    +            +++ +  v+ ++   +++e   Kv +l vl  v + k+ +++  ++ +   g+  g++++    ++   + f ++q l+++l 
     KKY21551.1  89 NlsvhdfqlmktvGTGTFARVWLARFadSKEEDNDKVFALKVLRKVDVIKLKQVEHVRNERNNLGAVAGHPFITT--LI---TSFSDDQCLYMLLN 179
                    144444444555577778888877655456666778888888887777766666444444444444444444332..22...33467888999999 PP

  Haspin_kinase 190 lkdkGtdLeev.klkswkqa.lsifw..qivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsR 255
                       +G+  + + k k + +    +++  +iv +L    ++     RdL+ +niL+d+++++ ++d+  ++
     KKY21551.1 180 YCPGGEVFSYLrKAKRFPERpHTVLYaaEIVLVLEFLHNAHGIAYRDLKPENILLDAEGHIKIVDFGFAK 249
                    999****99987788886642678885568889999999***************************8876 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.76   1.9e+03      33      84 ..     141     188 ..     115     210 .. 0.71
   2 !   15.8   0.0   3.9e-06    0.0099     162     197 ..     214     249 ..     177     252 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.76
                 -HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS CS
         APH  33 aaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr 84 
                   e++r+e   l ++a++++ +  ++    +  +   l+ l+ y+pg  +  
  KKY21551.1 141 QVEHVRNERNNLGAVAGHPF-ITTLIT---SFSDDQCLYMLLNYCPGGEVFS 188
                 56788889999999999977.434444...6677777788888888876655 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 3.9e-06
                 S..SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 162 g..elptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                    + ++++  +Dl+p N+l+d ++g++  ++Df++a+
  KKY21551.1 214 EflHNAHGIAYRDLKPENILLD-AEGHI-KIVDFGFAK 249
                 1445799999************.55776.6*****996 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.3   3.2e+03      80     103 ..      65      88 ..      59      98 .. 0.78
   2 ?   13.5   0.0   1.3e-05     0.033     152     283 ..     208     341 ..     187     346 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.3
  Kinase-like  80 hlrlllpfdlvkiqkkkpfiqlks 103
                  +  +l+p+++ ++ k k +   + 
   KKY21551.1  65 RQEVLKPSEIAQDAKNKLLGSSSH 88 
                  556899999999999998877665 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.3e-05
  Kinase-like 152 qlirlaanLq.akglvhgkftvdnllldekgglmlggftaL..vragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwcl 246
                  +++ +   L+ a+g+   +++++n+lld +g +++ +f+    + + + + l  +++ +aP  + +s              ++d W+lG+ iy     
   KKY21551.1 208 EIVLVLEFLHnAHGIAYRDLKPENILLDAEGHIKIVDFGFAkeIHDRETYTLCGTPEYLAPEVIKNS----------GHGKAVDWWALGILIYEFIVG 295
                  5555666666257999*******************99875511555556666777776666444444..........235689**********99999 PP

  Kinase-like 247 klPltlateeakeew.........kfklckkipekvkaLlkkfLql 283
                  + P+    ++ + e          + ++  k++e  k L++++ ++
   KKY21551.1 296 QPPFWDSNPLRIYEQivagrlrfpSPSHSLKVSESAKDLIQGLCKV 341
                  9999888888877766777776655566667777777777776655 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     1e-05     0.027     315     392 ..     209     277 ..     196     282 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1e-05
  Pkinase_fungal 315 aIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHs 392
                      +  ++ L++  gi  rD   +Nil+      +e +  ++D+ +ake++d +   +  +  GT+e++a ev+k++ H 
      KKY21551.1 209 IVLVLEFLHNAHGIAYRDLKPENILLD-----AEGHIKIVDFGFAKEIHD-R---ETYTLCGTPEYLAPEVIKNSGHG 277
                     5677889*******************9.....788999***********6.2...33579*************98895 PP

>> DUF5094  Domain of unknown function (DUF5094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.7   3.3e-05     0.084      37     107 ..      19      91 ..       5     150 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.3e-05
     DUF5094  37 keaeekkeekvtstkenkenekqdkd.sllkeikdienelieaykeeNeyLrslknevlltskllGltike.t 107
                 ++ +ek  +k+++ +++++ + ++++  +  ++ + e+++i+ay+e  e+L+  + ++ +  kllG  +++ +
  KKY21551.1  19 NKLKEKLSDKSDDDDDEQSHNGSRNGnGVDGQTLQDEKDFITAYEERQEVLKPSEIAQDAKNKLLGSSSHNlS 91 
                 444555555555554444433333335778899999*****************9************9988752 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 2840.54
//
Query:       KKY21552.1  [L=956]
Description: putative rho guanyl nucleotide exchange factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-82  275.1   0.0      3e-81  273.0   0.0    1.9  2  CNH       CNH domain
    7.7e-43  145.8   0.0    1.8e-42  144.6   0.0    1.6  1  PH_5      Pleckstrin homology domain
    1.6e-36  126.2   0.0    3.6e-36  125.1   0.0    1.6  1  RhoGEF    RhoGEF domain
    1.9e-14   53.4   0.0    8.5e-14   51.4   0.0    2.1  2  DEP       Domain found in Dishevelled, Egl-10, and Pleckstrin
  ------ inclusion threshold ------
      0.034   13.9   0.2       0.15   11.9   0.0    2.1  2  PH_13     Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> CNH  CNH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.26   9.4e+02     134     155 ..     145     167 ..     126     176 .. 0.72
   2 !  273.0   0.0   8.4e-85     3e-81       2     274 ..     609     896 ..     608     897 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.26
         CNH 134 e.fqvpaevfsisvlkpklcvgv 155
                   f++ +e++s ++++++lc+++
  KKY21552.1 145 GvFTLLTECYSPTCTRDNLCYSI 167
                 3466679*************985 PP

  == domain 2  score: 273.0 bits;  conditional E-value: 8.4e-85
         CNH   2 apitggqrlllGteeGlyllnl...sdeskpvkieklssvtqlaVleelnlllllsdkqLyvydlsaLeekeeesqlakkksenltqklpetkgchffa 97 
                 +p +gg++l++Gt++G+yl+++   +++ kp++i   + vtq++ lee+ ll++l++k+L +y+l+aL++++ ++qla++        ++   +++ff+
  KKY21552.1 609 VPTDGGRKLIYGTDSGIYLSDRwpkDKSAKPKRILEANAVTQIDTLEEYALLIVLANKTLTSYPLEALDSTDSQNQLARR-------PKKIQGHANFFK 700
                 6889********************98999********99*********************************88865532.......4556889***** PP

         CNH  98 irngyskekfLvvavks.....kivllewneplkkfk................kklrefqvpaevfsisvlkpklcvgvakgFelvnldegaaeslldp 175
                   +g   ++ Lv++vk+     +i+++e+ ++l k k                k ++ef++pae +s+++l++ lcvg++kgFe+v+l++ + +slld+
  KKY21552.1 701 --AGIGLGRHLVCTVKNsslssTIKVYEPMDNLAKGKkkpalskmfqsgqealKPFKEFYIPAESSSVHFLRSTLCVGCSKGFEVVSLETTERQSLLDQ 797
                 ..************************************************************************************************* PP

         CNH 176 ednsldfaarkenlkplaviqisedefLlcydefavyvdlqGrrsr.dseleWegkPesvaclepyllafhknfieirsvetgelvqeisgkklrflls 273
                 +d+sldf++rken+kp+++ +++ +efLl y++f ++v+++G+r r d++++Weg+P+++a+++py+laf++ fieir++et+el+++++g+++r+l+s
  KKY21552.1 798 ADTSLDFVMRKENMKPIHIERLN-GEFLLNYSDFSFFVNRNGWRVRpDWKITWEGQPQAFALSYPYILAFEPSFIEIRHIETSELIHIMTGRNVRMLHS 895
                 ***********************.**************************************************************************9 PP

         CNH 274 g 274
                 +
  KKY21552.1 896 S 896
                 7 PP

>> PH_5  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.6   0.0     5e-46   1.8e-42       3     135 .]     455     578 ..     452     578 .. 0.93

  Alignments for each domain:
  == domain 1  score: 144.6 bits;  conditional E-value: 5e-46
        PH_5   3 fkgtlkkketsksesadiqvyLfDhalLlvkiktvnkreqykvyrrPiPLeLLvvseaedvpkkkglkkrkssslikkkksssnlvlvpekaekkkgya 101
                  k+ +kk ++++    +++vyLfDha+Llv+ik+vnkre+y+vyr+PiPLeLLv++e+++v+++ gl+kr+sssli+ +ks+sn+         k++++
  KKY21552.1 455 SKMNFKKGPSDT---GEVTVYLFDHAVLLVRIKMVNKREEYRVYRKPIPLELLVIAEMDQVIPRIGLAKRPSSSLIPGTKSNSNTP------GDKQTWP 544
                 466666666554...59*******************************************************************95......789**** PP

        PH_5 102 itflhlGkkgyeltLyastlaarqkwlekiekqq 135
                 itf+hlG+  yel Lya+++++r+k++ek+e+qq
  KKY21552.1 545 ITFRHLGRGAYELPLYATSMTQRKKFIEKVEEQQ 578
                 *********************************8 PP

>> RhoGEF  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   0.0     1e-39   3.6e-36       1     182 []     229     415 ..     229     415 .. 0.97

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 1e-39
                 HHHHHHHHHHHHHHHHHHHHHHTHCCCHHCT.........CCHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHH.HHHTTSS-S-SHHHHHHHHSTHHHH CS
      RhoGEF   1 vikElleTErsYvrdLkvlvevylkplsele.........vlseeeikiiFsnieeilelhrsflleeLeerlkeseeqkeaqsigdvflkfadkfkkY 90 
                 vi El  TEr++v+dL++l +++++pl+  +            e+ ++++F+n+ e+++++  ++ e+L++r+   +e+   ++igd+fl+fa+ f+ +
  KKY21552.1 229 VISELCYTERDFVKDLEYLRDFWMRPLRAINtnvpspipeHRREKFVRTVFGNCLEVHAVN-AKFAEALSSRQ---KENAVVRNIGDIFLQFAPRFDPF 323
                 799************************9888999**988888899999*************.99********9...788899***************** PP

                 HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGTT--HHHHTTHHHHHHHHHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHHHHHHH CS
      RhoGEF  91 seYcsnypnalkllkelskknkkfkafleeaeerpecskldLeslLikPvqRlprYpLLLkellkntpeshpdyealkkaleaikevaseiN 182
                  +Y + + + +  +++++ +n+ f +f++e e+ +e +kl+L+ +L kP  Rl rYpLLL+ +lk+t++++pd++++  a+  ik+++ ++N
  KKY21552.1 324 IKYGAGQMRGKYEFEREKGQNPAFGRFVDETERLKESRKLELNGYLTKPTTRLARYPLLLEGVLKYTKDDNPDKQDIPVAIALIKDFLARVN 415
                 ***************************************************************************************99998 PP

>> DEP  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   2.4e-17   8.5e-14       4      72 .]      63     130 ..      60     130 .. 0.96
   2 ?   -1.7   0.0      0.85   3.1e+03      49      70 ..     568     589 ..     563     590 .. 0.87

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 2.4e-17
                 SCEEECTTEEESSE-HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHCTSCECSSSSHCC--SSSSS-EEE CS
         DEP   4 lkdrrkhlktypncftGseavdWLldnldiedreeAvalgqlLldqgliehvedkhqeFrdskqafYqf 72 
                 + +r+k++ ty n+ftG+eavd +   +++ dr+ A+ lg++L +q+++++v+++h+ +rd +  +Y+f
  KKY21552.1  63 VGERTKNGLTYTNAFTGAEAVDLISYIIKTADRNLALLLGRALDAQKFFHDVTYDHR-LRDAPGEVYRF 130
                 6689999**************************************************.**********9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.85
                 CTSCECSSSSHCC--SSSSS-E CS
         DEP  49 qgliehvedkhqeFrdskqafY 70 
                 +++ie ve++++++r+ ++ fY
  KKY21552.1 568 KKFIEKVEEQQSKLRERNSNFY 589
                 789****999999999988888 PP

>> PH_13  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.79   2.8e+03     110     145 ..     192     227 ..     182     232 .. 0.65
   2 ?   11.9   0.0   4.2e-05      0.15      70     146 ..     487     591 ..     450     597 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.79
                 EEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTXXX CS
       PH_13 110 kvitlkaesanersaWvkkikeAsekyietekkkre 145
                    +l+ e   e+ +W++ + +      ++  kkr+
  KKY21552.1 192 SNGSLHDEDNDEQRLWINSVPKEVAASTDDREKKRQ 227
                 555677888999999999996554444444444443 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 4.2e-05
                 S--EEEEE-SS-EETTSEEEE-............................-SSS-.----EEEEEESSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH CS
       PH_13  70 ksnaqfklYkkpiflnevlvkk............................psdksdssekvlklsdidkvitlkaesanersaWvkkikeAsekyiete 140
                 ++  ++++Y+kpi l+ +++ +                            p dk++   +  +l    +++ l a s+++r+++++k++e ++k  e++
  KKY21552.1 487 NKREEYRVYRKPIPLELLVIAEmdqvipriglakrpssslipgtksnsntPGDKQTWPITFRHLGRGAYELPLYATSMTQRKKFIEKVEEQQSKLRERN 585
                 56789***************999*********************999988788886666667888899999*******************999998887 PP

                 TTXXXX CS
       PH_13 141 kkkrek 146
                  +   k
  KKY21552.1 586 SNFYTK 591
                 766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (956 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 6388.85
//
Query:       KKY21553.1  [L=474]
Description: hypothetical protein UCRPC4_g03658 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3763.85
//
Query:       KKY21554.1  [L=345]
Description: hypothetical protein UCRPC4_g03659 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.52
# Mc/sec: 2010.75
//
Query:       KKY21560.1  [L=920]
Description: putative atp-dependent rna helicase chl1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-51  175.4   0.0    4.1e-51  173.6   0.0    2.0  2  Helicase_C_2    Helicase C-terminal domain
    8.5e-46  155.8   0.0    1.8e-45  154.7   0.0    1.6  1  DEAD_2          DEAD_2
    5.4e-21   75.6   0.0    1.4e-20   74.2   0.0    1.8  2  Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27
  ------ inclusion threshold ------
      0.097   12.3   0.0       0.22   11.2   0.0    1.5  1  HBB             Helical and beta-bridge domain
        0.7   10.0   3.2        1.2    9.3   0.6    2.5  2  ArnB_C          Archaellum regulatory network B, C-terminal d
       0.89    8.9   3.5       0.36   10.2   0.2    1.8  2  RNase_E_G       Ribonuclease E/G family
        1.5    8.6   3.7       0.91    9.3   0.9    1.9  2  MAJIN           Membrane-anchored junction protein


Domain annotation for each model (and alignments):
>> Helicase_C_2  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.6   6.6e+03      35      72 ..      58      92 ..      34      94 .. 0.59
   2 !  173.6   0.0   1.6e-54   4.1e-51       1     155 [.     599     783 ..     599     790 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.6
  Helicase_C_2 35 skkieifveekeesrekvleeykekkkkgaillavcrG 72
                  ++++e+++  ++++ e+ le +++ k+k+a+l  + rG
    KKY21560.1 58 ERRKELLE--SRQELESHLEAIRA-KEKRAMLSQSSRG 92
                  23333333..35566666666666.7888887666655 PP

  == domain 2  score: 173.6 bits;  conditional E-value: 1.6e-54
  Helicase_C_2   1 llellevvpggvlvffpSyklleevverlkeel.........eskkieifvee.keesrekvleeykek..kkkgaillavcrGklsEGidfsddll 85 
                   ll+l++ +p+g++vffpSy++l+ v++r+++ +          s+ ++ f+e+ +++s+ +++e+y ++  ++kgaill+v++GklsEGi+fsd+l+
    KKY21560.1 599 LLDLASEIPDGMVVFFPSYEYLRLVMDRWRQPMgtnesifdrISQVKPTFWESkDTASTGEIFEDYARSiaNGKGAILLSVVGGKLSEGINFSDKLG 695
                   67899**************************54333333443444457777765788999*******9556************************** PP

  Helicase_C_2  86 raviivglPfpnpkdpeveakreyldekgk..................knsgkewylpealravnQaiGRliRhkdDygaivllDeRf 155
                   rav+++glPfpn+++ e++ak e++++ ++                  k++g+e+y+++++ravnQ+iGR+iRh++D+++i+l+D+R 
    KKY21560.1 696 RAVVVIGLPFPNIQSIEWKAKIEHVENAQRenllagnglptaereaqtKEAGREFYENACMRAVNQCIGRAIRHRNDFATIILMDRRR 783
                   ***************************9999***************99999***********************************95 PP

>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.7   0.0   7.1e-49   1.8e-45       1     176 []     170     362 ..     170     362 .. 0.88

  Alignments for each domain:
  == domain 1  score: 154.7 bits;  conditional E-value: 7.1e-49
                 EEESSHHHHHHHHHHHHHHHHHCH....H..........HS---EEEE--CCCC-SCHHCCCHHCCCCHHHHHHHHHCCHHCCHTTTTTT-SCCCCHHH CS
      DEAD_2   1 ycsRThsqleqvvkelkklesykk....k..........kekvkvviLgSRknlCineevkkekkekavneaCkelkkkkaeekeekCsffenleelkk 85 
                 ycsRThsql+q+v+el++++   +    +           e vk+++LgSR+nlC+n +v+  k+++ +ne+C+el+k   ++ e+kC++  ++ e+ +
  KKY21560.1 170 YCSRTHSQLSQFVSELRRVK-LPSgmdyErsdeddhpgvFEPVKHISLGSRNNLCVNGKVVALKTTTLINEKCRELQKAGLSA-EQKCKYLPAKDEAAR 266
                 9*****************95.333343414466777777789************************************99765.899****99966665 PP

                 H...HHHHHHC---CHHHHHHHHHCT--HHHHHHHHHCCT...SEEEEEHHHHTSCCCHHHHHT..GCGCEEEECTCCCHHHHHHHCC-EEEECHHH CS
      DEAD_2  86 l...kkllleevvdiedlvelgeklklCPYylsrelleda...diiilpYqyLldekireslkgislknsivilDEAhNiedvceeaasveiseesl 176
                     ++ +l+++ diedl  lg++l++CPYy+sr+++++    +i++lpY +Ll++++re+lk + lk +++i+DEAhN+ d + +a+s+ +s ++l
  KKY21560.1 267 WigfRDYALAKIRDIEDLAGLGRRLEVCPYYASRSTVPSSevpQIVTLPYPLLLQKSARETLK-LILKGQVIIIDEAHNLMDAISSANSALVSLSQL 362
                 5677********************************998733368*****************9.88***********************99987776 PP

>> Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         7   1.8e+04      48      70 ..     353     381 ..     346     405 .. 0.65
   2 !   74.2   0.0   5.6e-24   1.4e-20       3     127 ..     799     917 ..     797     918 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 7
                     --EEEEHHHHHHTTTTGTTS.--.....- CS
  Ribosomal_L27A  48 eykvvnlkdLdelideerle.la.....d 70 
                     + + v+l++Ld++ ++++   +a     +
      KKY21560.1 353 NSALVSLSQLDRATEQLTSYvQAfknrlK 381
                     55678888888877777665333444443 PP

  == domain 2  score: 74.2 bits;  conditional E-value: 5.6e-24
                     GGTSSTTTTTTTTT-..S--........S--.........---..GGG..---...EEEEHHHHHHTTTTGTTS--......----EEEGGGTTT CS
  Ribosomal_L27A   3 ktgGrGhkGqkkrsg..vkk.kpg.feGGqmplyrrlpkrGfk..nskfkkey...kvvnlkdLdelideerlela......deaeeidleelae 82 
                     ++gGrG++G +++++   +k +pg f  G++         G++  +++  +++   +v+nl++L++l++ee++++       d+a+++dl  l  
      KKY21560.1 799 HPGGRGMAGGQHHHRtnLDKyHPGyF--GKV---------GMRyfHKT--QNQfwkPVINLDKLWSLVPEETRDAYliekktDTAPVLDLLPL-- 878
                     78***********9999899999999..***.........99865433..444577****************98446999988999*******.. PP

                     TSSS....SE.EEE--S---..--EEEESEE-HHHHHHHHHTT-EEE CS
  Ribosomal_L27A  83 aglikkkdgv.Kvlgkgeltk.klkvkaskfSkkAkekIeaaGGkve 127
                             g+ Kvlgkg+l++ ++ v+a++fSk+A+ kI++aGG ve
      KKY21560.1 879 --------GYsKVLGKGRLPEiPIVVRARYFSKEAERKIKEAGGVVE 917
                     ........***********9967*********************998 PP

>> HBB  Helical and beta-bridge domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.7e-05      0.22      94     157 ..     477     541 ..     473     570 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.7e-05
                 HHHHHHHHHTS.TTTEEEEEE.STT.EECCCCS-TCCHHH.HHHHCHCCCCCCTS-SSHHHHHHH CS
         HBB  94 laefllawlssdeedYvrlvskeegesLeavcldPskalr.flkerlssllmsgtltpleeysdi 157
                  + fll  ++  +e  + l  ++++  L  + ldP++++r  +++ + ++l  gt++p+ +y++ 
  KKY21560.1 477 AQAFLLCLMNPSAEGIIYLSCQDSQYVLRYTLLDPKTHFRdIVEDARAVILAGGTMSPMSDYAQY 541
                 567888888888888888888999999***********973677888899999*********987 PP

>> ArnB_C  Archaellum regulatory network B, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.6   0.00045       1.2      35      67 ..      51      83 ..      34      93 .. 0.85
   2 ?   -0.7   0.1      0.62   1.6e+03      11      43 ..     371     403 ..     365     408 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00045
                HHHHHHHHT-HHHHHHHTT--S-HHH....... CS
      ArnB_C 35 leeiAeqTrrieliEaTrrLsrdlesteklske 67
                + e+A + rr el+E+ ++L+++le+ +  +k+
  KKY21560.1 51 MIEAASKERRKELLESRQELESHLEAIRAKEKR 83
                6689**********************6665554 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.62
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHT CS
      ArnB_C  11 ellkkysealeagnlkeATrilqeleeiAeqTr 43 
                 ++ ++ ++ l+ +n +  T+il+ l+ + ++Tr
  KKY21560.1 371 SYVQAFKNRLKGKNRVYVTQILRLLHSVGKATR 403
                 56778889999999999***********99999 PP

>> RNase_E_G  Ribonuclease E/G family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.3      0.68   1.7e+03      46      79 ..      51      83 ..      27     110 .. 0.62
   2 ?   10.2   0.2   0.00014      0.36     113     178 ..     363     423 ..     319     449 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.68
   RNase_E_G 46 IvRtaaegaseeelekdleelkkkweeilekakk 79
                ++  aa++++ +el +  +el+++ e i++k k+
  KKY21560.1 51 MI-EAASKERRKELLESRQELESHLEAIRAKEKR 83
                44.3455566667777778888888888877753 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00014
   RNase_E_G 113 kelyeeikeyleevapeleekvelyeeeeplfelysiekqiekalsrkvwlksGgylvIeqTEAlt 178
                 +++ e++++y++ ++++l+ k ++y     + + +++ + + ka++ k +l++G+ ++I +TE + 
  KKY21560.1 363 DRATEQLTSYVQAFKNRLKGKNRVY-----VTQILRLLHSVGKATRGKLQLRNGAEMIIANTELMA 423
                 5678889999999999999888888.....9999*****************************885 PP

>> MAJIN  Membrane-anchored junction protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.9   0.00036      0.91     116     185 ..      41     110 ..      33     159 .. 0.76
   2 ?   -1.4   0.1      0.63   1.6e+03     106     160 ..     413     470 ..     412     479 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00036
       MAJIN 116 pGkpindsPlglvlaekkaaeavlkkrkkveepssPsragldrakletsseaaskkkplketrrnreeks 185
                 + k  +d P  +  a k+  ++ l+ r++ e +    ra+++ra l +ss+ + kk+        +++ +
  KKY21560.1  41 EFKEADDPPWMIEAASKERRKELLESRQELESHLEAIRAKEKRAMLSQSSRGNPKKRQRIAYDEDNSNAN 110
                 5588999*****************************************9998887776555444333322 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.63
       MAJIN 106 emkwfhenlspGkp...indsPlglvlaekkaaeavlkkrkkveepssPsragldrak 160
                 em  ++ +l +Gk    in+  l + l e + a +v    ++ +e+  P+++ ++r +
  KKY21560.1 413 EMIIANTELMAGKGvdqINSHKLSVYLQESRLALKVEGFARHRQEKEDPNHNEKKRMR 470
                 7778888898998611145667777788888777777777777777788887777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.85u 0.27s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 6014.08
//
Query:       KKY21561.1  [L=282]
Description: hypothetical protein UCRPC4_g03512 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00012   21.7   0.0      0.032   13.7   0.0    2.2  2  Peptidase_S9  Prolyl oligopeptidase family
  ------ inclusion threshold ------
       0.13   11.5   0.0        1.3    8.3   0.0    2.1  2  Hydrolase_4   Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   3.6e-06     0.032      60     113 ..      85     137 ..      74     156 .. 0.81
   2 !    5.8   0.0   0.00093       8.3     135     188 ..     193     255 ..     179     269 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.6e-06
                   S--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTSTHH CS
  Peptidase_S9  60 yvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdllte 113
                    ++ ++ ++ G S GG  t  +l  ++ +F+ +v + ++ d lr +sd   lt+
    KKY21561.1  85 PIKISQNIVLGISLGGHSTWHVLL-HDARFDTGVVVIGCPDYLRLMSDRARLTK 137
                   5666777899**************.**********************9644665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.00093
                   -CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH.......--S-S..EEEEEETTS-SST CS
  Peptidase_S9 135 spldnvkaypplLlihGlaDdrvppaealklvaaLq.......kkgkn..vlllifpdegHgv 188
                   s + n+  ++++L + G aD+ vp+  ++ +++ Lq       ++g+   ++ +++ + gH +
    KKY21561.1 193 SAVYNLLGNKRILNMSGGADKLVPYHCSEPFIRWLQrviaseqNRGNAivLQDRVYEGVGHMF 255
                   34445556899*************************999999878888544447899999965 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00014       1.3      30     108 ..      22     121 ..      17     140 .. 0.77
   2 ?    0.8   0.0     0.026   2.4e+02     194     216 ..     204     226 ..     189     243 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00014
  Hydrolase_4  30 qGfavyalDhrGhGrse...........gkrghvpsfddyvd....Dlaafvekvk.eehpel.....plfllGhSmGGliallyllrypdkva.gli 105
                  +G   + +D+r hG  e           g+  h +++ ++++    D + ++++v+    pe+     + ++lG S+GG  + ++ll+ ++ ++ g++
   KKY21561.1  22 KGLIAVSFDQRNHGSREvdgkankawreGNETHAQDMYSIYRgtalDTSLLLDHVAsYAFPERpikisQNIVLGISLGGHSTWHVLLHDAR-FDtGVV 118
                  56667788888888888888888888887777777766665444447788888888667777755566779*************9999998.666998 PP

  Hydrolase_4 106 lsa 108
                  +++
   KKY21561.1 119 VIG 121
                  876 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.026
  Hydrolase_4 194 llllhGeaDkvvdpeasrelyer 216
                  +l ++G+aDk+v++  s+ +++ 
   KKY21561.1 204 ILNMSGGADKLVPYHCSEPFIRW 226
                  78899*********999777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.33s 00:00:00.88 Elapsed: 00:00:00.51
# Mc/sec: 1651.75
//
Query:       KKY21562.1  [L=1870]
Description: putative phospholipase d1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.4e-16   57.4   0.8    1.1e-06   28.6   0.1    2.9  3  PLDc         Phospholipase D Active site motif
      8e-13   48.4   0.0    1.1e-06   28.6   0.0    2.9  2  PLDc_2       PLD-like domain
    9.7e-08   32.0   0.0    4.3e-07   29.9   0.0    2.1  1  PX           PX domain


Domain annotation for each model (and alignments):
>> PLDc  Phospholipase D Active site motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.8   1.1e+04       1       8 [.     742     749 ..     742     749 .. 0.89
   2 !   28.6   0.1   1.8e-10   1.1e-06       2      28 .]     937     963 ..     936     963 .. 0.96
   3 !   26.6   0.0   7.9e-10   4.7e-06       6      28 .]    1247    1269 ..    1242    1269 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.8
                 TTBEE--- CS
        PLDc   1 ymgthHqK 8  
                 +++t+H+K
  KKY21562.1 742 TDFTLHAK 749
                 689****9 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 1.8e-10
                 TBEE---EEEETTTEEEEE---SSHHH CS
        PLDc   2 mgthHqKivivDdrvafvGgaNLcdgr 28 
                 ++ hH+K   +D++vafvGg +Lc gr
  KKY21562.1 937 FWAHHEKLCLIDHTVAFVGGIDLCFGR 963
                 79**********************997 PP

  == domain 3  score: 26.6 bits;  conditional E-value: 7.9e-10
                  ---EEEETTTEEEEE---SSHHH CS
        PLDc    6 HqKivivDdrvafvGgaNLcdgr 28  
                  H+K ++vDdrva++G+aN++ ++
  KKY21562.1 1247 HAKCMVVDDRVAIIGSANINERS 1269
                  ********************996 PP

>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   9.1e-07    0.0054       4      99 ..     845     957 ..     842     971 .. 0.71
   2 !   28.6   0.0   1.8e-10   1.1e-06      80     120 ..    1244    1286 ..    1114    1290 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 9.1e-07
      PLDc_2   4 liksAkksidiatyyf...........vsdreildallk.aakrgvkvrilldskkddagavdeaslkelkellleagvevrvfe.t......llgslH 83 
                 +i++Ak+ i+i    +           +s+r+ ld+llk +a++gvk+ +++ ++++ ++++ +    +++ l l+ +v v+ +  +      +    H
  KKY21562.1 845 AINQAKDVIYIHDWWLspelymrrppaISQRWRLDRLLKrKAEEGVKIFVIMYRNIE-SAIPIDSGYTKFSLLDLHPNVFVQRSPnQirqntfF-WAHH 941
                 6788887777777777666666777767777779999777*************9775.455555555555555555555555443313334432.577* PP

      PLDc_2  84 aKlylidgktvivGSs 99 
                 +Kl+lid+++++vG+ 
  KKY21562.1 942 EKLCLIDHTVAFVGGI 957
                 **************97 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 1.8e-10
      PLDc_2   80 gslHaKlylidgktvivGSsNltkrgl..dlnlElnvviedke 120 
                    +HaK++++d++++i+GS+N+++r++  +++ E++ ++ d +
  KKY21562.1 1244 LYIHAKCMVVDDRVAIIGSANINERSMlgSRDSECAAIVRDTD 1286
                  568************************8888889999988876 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   7.3e-11   4.3e-07      16     112 ..     480     668 ..     466     669 .. 0.95

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 7.3e-11
                 TSSEEEEEEEEEETTS..SSEEEEEEEHHHHHHHHHHHHHHHT..........TSTSTSSSTSGSSSSS.............................. CS
          PX  16 skkhsyylyevelktg..akewtvkRrYsdFeeLhskLlrkfp..........rvkiPplPkkvlfgsv.............................. 72 
                 +++ +++ +e e+++g  + +w +kR+ +dF+eLh   + +f             k+P++P +  ++                                
  KKY21562.1 480 GDRPTIFRIELEYGNGvnRMRWVIKRSVRDFYELHLAYKGHFAkeklklrdtdDKKMPKFPYSAFPYLRtwvkleegedeeeeeeeeaggneteaasgt 578
                 56778999999***99**************************9*********************99877****************************** PP

                 .................................................CTTSHHHHHHHHHHHHHHHHHHHTSCHHHH.SHHHHHHHHS CS
          PX  73 .................................................rkkdeefiekrrkgLeeyLqrllnhpelrn.sevlteFLev 112
                                                                  + k+e   e++r++ e yLq++++   +r+ s+ l +FLe 
  KKY21562.1 579 erpgvkkrnrssfvatrrksttptigansasiagaltgaggaagavgsaTIKKETYPERQRRKVEIYLQKMIKFMLFRPdSNRLCRFLEI 668
                 *************************************************9999***********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1870 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:00.50
# Mc/sec: 11234.41
//
Query:       KKY21563.1  [L=105]
Description: putative ethyl tert-butyl ether degradation [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.033   15.3   0.1       0.07   14.3   0.1    1.5  1  EthD      EthD domain


Domain annotation for each model (and alignments):
>> EthD  EthD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   3.9e-06      0.07      10      94 .]      18      93 ..      12      93 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.9e-06
                HHHHHTHHHHHCTSTT............--EEEEEEEEEBTTC--SEEEEEEEEESSHHHHHHHHCSHHHHH.HHHHHHHHCGGX CS
        EthD 10 dyweevHaplvkdllggirryvlratktrpateagvalagpgsdadyDgiaelwfdsleaflaafadpeyaavlaaDeenFaDks 94
                +y+ ++H+plv +           ++   + +  ++  +++ + + y + a l f  ++ +  a+ ++++ a + +D++nF Dks
  KKY21563.1 18 SYYLQTHMPLVYEKWS--------QYGLTKWQVVEIKKTLGDAQPLYSVQALLEFNEADGLAEAVKSDAGVA-VFDDVKNFSDKS 93
                799999*****99999........5678899999999999999****************************9.9*********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 833.33
//
Query:       KKY21564.1  [L=766]
Description: hypothetical protein UCRPC4_g03515 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-09   37.9   0.1      2e-09   37.2   0.1    1.3  1  CorA      CorA-like Mg2+ transporter protein


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.1   1.1e-13     2e-09     200     288 ..     262     346 ..     219     349 .. 0.82

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 1.1e-13
        CorA 200 elerllemlealrerleslqdtyssllserlNrvmkvLTvltaiflPlTlitGiyGmNfkglPelewsygypfvlllglmallailllf 288
                 +++  ++++ +lre l   + ++ s+ + r+ +++++LT +t +flPl++ t+i+Gm +  lP l  +    f++++  ++++++l++f
  KKY21564.1 262 HVREKSQEVRNLREGLFGASALFDSRTTVRQGDNIRLLTYITLLFLPLSFCTSIFGMQVI-LPSLPIKV---FIITVPTIFVFTALIIF 346
                 4444678888999999999999**************************************.**998888...55555566666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 5673.59
//
Query:       KKY21565.1  [L=718]
Description: putative golgi transport protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.2e-124  417.7   0.0   1.4e-124  417.5   0.0    1.0  1  Sec1      Sec1 family
  ------ inclusion threshold ------
       0.24   11.4   1.0        1.3    9.1   0.3    2.3  2  DUF1043   Protein of unknown function (DUF1043)


Domain annotation for each model (and alignments):
>> Sec1  Sec1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  417.5   0.0  1.5e-128  1.4e-124       1     574 [.      55     708 ..      55     709 .. 0.86

  Alignments for each domain:
  == domain 1  score: 417.5 bits;  conditional E-value: 1.5e-128
                 EEEEE-HHHHHHHHTT--HHHHHTTTEE...ETT..T--S-.....BTTSEEEEEE-S-HHHHHHHHHHHHSS-SBS-EEEEESS---HHHHHHHHH.. CS
        Sec1   1 KvLvlDkelskilssvlkvsdlleegVt...kieklkkrepskrealphlkaiyflrptkenidrlakdfisarrykeyhifftprlseslleglakad 96 
                 KvLv+D+  ++++ssvl+v+dl+ +gVt   +i+  + r     +++p+++++y+++p++ n++++ +d   +  y  ++++f+++ +++lle++a ++
  KKY21565.1  55 KVLVFDNLGRDVISSVLRVNDLRARGVTihlNIN--SPR-----YPIPDVPVLYLVEPNRVNLKLITSDL-TRGLYTPAYVNFLSSAPRQLLEDFAAEI 145
                 9**********************99***433333..245.....55*********************865.5599******************999888 PP

                 .S.G.GGGEE.EEE----SEEEETTEEE-S..TTHHHHSTTG.....GG.......--HHHHHHHHHHHHHHH-..--EEEE.-TT-HHHHHHHH.... CS
        Sec1  97 .e.evvkkvk.lkelnldfvplesdlfsln..pelplsfrdlyldndnsaleeeieslldriakgLlsvllslekkiPiiry.kgsaasmvakkladel 189
                  + +  +++  + +++l+f++ e+dlfsl   +e    + +l+   +++a++ee+++++dri++gL+sv++++ + +Piir+  + +a+ +a +l+++l
  KKY21565.1 146 vStNTAEHIAqVYDQYLNFIVAEPDLFSLGlgKE---TYLKLH---SSKATDEEVDNEIDRIVSGLFSVCVTM-GSMPIIRCpDKGEARDIATQLDRKL 237
                 7877555555555****************75433...233333...33378899*******************.89******98889************ PP

                 .......HHHHTTT.........--SS--EEEEE-GGG-SSTTTS---BHHHHHHHHS--BTEEEEEE--SS.....SEEEEEE--TT..-TTHHHHTT CS
        Sec1 190 kekids.kknfese.........ssrqrpvLiIlDRsvDlvtpllhqwTYqaliddllgglnnnnvvleeep.....keekeaelvesssDeffaelrh 273
                 +++i + k+n +s           +++rpvL+I+DR+vDl+++l h+wTYq+l++d+l+  +++n++++++      + + +a++++  +D+f++++  
  KKY21565.1 238 RDHILNsKDNLFSGaaqkhanayVPSSRPVLVIVDRDVDLIPMLSHSWTYQSLVHDVLK--MHLNRITVPTAdetnpNGKPKAYDLNV-NDFFWQRNAS 333
                 ******77777777********************************************9..899999999999999988888888888.9********* PP

                 SBHHHHHHHHHHHHHHHHHHH.HTTT....-.........TTHHHHHHHHHH-GGGHHHHHHHHHHHHHHHHHHHHS-HHH.HHHHHHHHHHHHSS--. CS
        Sec1 274 lnfgevgeklkkeakeyqeen.ekkrn.gak.........esiadlkkfvaklpelqeekkklskHtnlaeellkevkkrkldellelEqdlatgesdk 361
                  +f++v+e++++e+ +y++++ +++++ g++         +s a+lk +++ lpel+e+k++l++H+n+a++llk +k+r+ld++++lE+++      k
  KKY21565.1 334 VPFPQVAEDIDSELTRYKTDAdDITKKtGVSsiedlddssTSAAHLKAAITLLPELRERKATLDMHMNIATALLKGIKDRQLDNFFQLEETIT-----K 427
                 *********************9999997777*************************************************************3.....2 PP

                 B--..-HHHHHHHH.-TTS-H.HHHHHHHHHHHH....-B.-H.T--GG....GGHHHH.........GGGGG........---.BGGG-------... CS
        Sec1 362 kikekkvieeliad.deptseledklRLlllyslv.egglkek.elkellrelvqsaly.........gleylktlrsleklgllkkrkgkksskkkss 448
                 ++k  ++i+el++  d++t++  dklRL+++++l  e    +k e++ ++++l     +          l +++++++l+ ++ll++ +++++ +++++
  KKY21565.1 428 QTK--AQILELLTAdDKGTDP-LDKLRLFIIWYLStETEP-SKaEMTRFEQAL-----TavgcaeyipALTFVRRMKDLKVMTLLSTTSSSQQPQQSNQ 517
                 344..3477888884566777.5***********965443.336555554433.....22223444555888999999988999977666666666555 PP

                 ..............---------S.....TT-----H.....HHHHHHHHTTT-S-TTTS-BSS-GGGS----................---------- CS
        Sec1 449 ..........lklikeeedeesnyd..lsgvsryaPl.....lvrlvealikgkklssespslskkdpsqees................ssslrsakkt 514
                           ++ +++  + + n d  +sgv++++P+     l+++ve++++ + ++s+s   +++++ ++++                +s+l+ + ++
  KKY21565.1 518 plfgglsslsKNFSSTLGSVNVNFDslISGVKNFLPAnrdltLTKIVESIMD-PASASSSAISKTENYLYFDPrnahargtasgpgagsGSGLGASGPG 615
                 999998776644455555555555599*************************.9999999999999****999***************99999999999 PP

                 ------------S-EEEEEEEEEE-HHHHHHHHHHT...T..................................SSSEEEEEEEEE--HHHHHH CS
        Sec1 515 nsaskesaekkkkqrviVffvGGvTysEiralrllskqek..................................knkeiiigttsilnpksfle 574
                 + as +++++ +++ +iVf vGG+++ E+ +l+++ k+++                                  ++k++++g+t+i+n+++f+ 
  KKY21565.1 616 TGASFGQRRQGFNE-AIVFTVGGGSMDEYGNLQDWVKRTSggaggpgtgvggassggpgsgttgssiasgygakQTKRVVYGSTEIINAQDFVT 708
                 99999999998888.******************999998899999999999999999999999999999999977799**************86 PP

>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.12     1e+03      66      88 ..     235     258 ..     228     264 .. 0.80
   2 ?    9.1   0.3   0.00014       1.3      48     103 ..     376     432 ..     351     449 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.12
     DUF1043  66 qkLyqhlaksseeLlp.eleeqel 88 
                 +kL +h+ +s+++L++ +++++ +
  KKY21565.1 235 RKLRDHILNSKDNLFSgAAQKHAN 258
                 79999********99977776665 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00014
     DUF1043  48 edHfaqsaelLetlaedyqkLyqhlaksseeLlp.eleeqelfqqkkleekkaeaee 103
                 + H++ + +lL +l e+  +L  h++  +  L   + ++ ++f+q + + +k+++++
  KKY21565.1 376 AAHLKAAITLLPELRERKATLDMHMNIATALLKGiKDRQLDNFFQLEETITKQTKAQ 432
                 67*************************9999988899999**998887777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 4742.18
//
Query:       KKY21566.1  [L=973]
Description: putative c-x8-c-x5-c-x3-h type zinc finger protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (973 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.51
# Mc/sec: 5721.18
//
Query:       KKY21567.1  [L=314]
Description: hypothetical protein UCRPC4_g03518 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-34  119.6   0.3    7.9e-22   78.0   0.0    2.1  2  AIM24            Mitochondrial biogenesis AIM24
  ------ inclusion threshold ------
       0.16   10.7   0.1       0.24   10.1   0.1    1.1  1  Chorismate_synt  Chorismate synthase


Domain annotation for each model (and alignments):
>> AIM24  Mitochondrial biogenesis AIM24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   0.0   8.8e-26   7.9e-22       1     130 [.     124     251 ..     124     253 .. 0.93
   2 !   41.0   0.1     2e-14   1.8e-10     155     201 .]     252     298 ..     251     298 .. 0.94

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 8.8e-26
                 EEEESS.SS-EEEEEE-TT-EEEE-CCGEEEEETTEEEEE--------------EEEEEEES.SS-EEEEE--SSSEEEEEEEGGTT.EEEEEGGGEEE CS
       AIM24   1 fevlge.pssllsvtLspgeelyaerGalvamsgkvemetgllkalkrlltgeslfllkftakissgtvllapklpgtivtlelgggdwlivqkdafLA 98 
                 ++++++ + sll+++L+ g+++ a++G ++ams++++++++++ ++k+l++g  +  +++t+   +g+vl+ap+++g+i  l+ +g ++++v++dafLA
  KKY21567.1 124 YRISHRdTNSLLTLQLAVGCPIQAKPGIMIAMSPTITLKGSVKFSFKKLVAGGDVAHSTYTG---PGEVLFAPSALGDISLLRFSGREEWMVGRDAFLA 219
                 678888899****************************************************5...5*****************98889*********** PP

                 EETT-EEEEEEEE--.SSGGGTS-EEEEEEESS CS
       AIM24  99 atgnveldikfqkgl.kglfggeglflqkltGr 130
                 at+++  + k+q ++ +++f+gegl ++++ G 
  KKY21567.1 220 ATQGIVKEHKSQ-SFkQAMFSGEGLYVYRIGGM 251
                 *****8888888.677999***********996 PP

  == domain 2  score: 41.0 bits;  conditional E-value: 2e-14
                 EGGGEEEEETTEEEEEEEE..TT---STTTTS-EEEEEEEEEEEEEESS CS
       AIM24 155 dpghlvafsgslkfdierv..gglkrrligGeglflkltGpgtvllqsr 201
                 d++hlva++  +k+ +erv  gg+++ + +Gegl++k+tGpgtv++q+r
  KKY21567.1 252 DNNHLVAWN--CKYILERVasGGIISGISSGEGLVCKFTGPGTVYMQTR 298
                 89*******..89988988889*************************98 PP

>> Chorismate_synt  Chorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   2.6e-05      0.24     227     271 ..     238     287 ..     231     298 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 2.6e-05
                      EETTGGGGGGSBHHHHS--EE.....EESS-TTTTEETTEEBSS-EEEEE CS
  Chorismate_synt 227 eiGsGfeaaelkGseanDeiv.....lrktnnaGGieGGisnGepivvrv 271
                        G+G+ + ++ G ++n  +      + ++  +GGi  Gis+Ge +v+++
       KKY21567.1 238 FSGEGLYVYRIGGMDNNHLVAwnckyILERVASGGIISGISSGEGLVCKF 287
                      5699999999999999998886654333999***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2089.07
//
Query:       KKY21568.1  [L=316]
Description: putative eukaryotic translation initiation factor 2 beta subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-42  142.3   0.5      9e-42  141.7   0.5    1.3  1  eIF-5_eIF-2B     Domain found in IF2B/IF5
  ------ inclusion threshold ------
        0.1   12.2   9.4       0.15   11.7   9.4    1.2  1  GET2             GET complex subunit GET2
       0.25   11.2   2.3         12    5.8   0.0    2.7  3  zf-HYPF          HypF finger
        1.3    7.7   8.5        1.8    7.3   8.5    1.1  1  SAPS             SIT4 phosphatase-associated protein
        2.9    8.3   9.1        1.1    9.6   0.3    2.9  3  Arc_trans_TRASH  Archaeal TRASH domain


Domain annotation for each model (and alignments):
>> eIF-5_eIF-2B  Domain found in IF2B/IF5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.7   0.5   2.5e-45     9e-42       8     116 ..     184     293 ..     178     294 .. 0.97

  Alignments for each domain:
  == domain 1  score: 141.7 bits;  conditional E-value: 2.5e-45
                   SS--SSTT--EEEETT.EEEETTHHHHHHHHTTSHHHHHHHHHHHHTSEEEESETTEEEESSSSSCCHHHHHHHHHHHHHTSTSSSTSTCEEECC.S CS
  eIF-5_eIF-2B   8 kerykmpklqvkvegkkktvivNfeeiakaLnrdpehvlkyllkelgtqgsidengrlilngkfeakkleklldkyieeyVlCkeCkspetelek.e 103
                   ++ yk+p++q+ +eg+kkt+++N+++i+k+++r++ehv+++l++elgt+gs+d+++rl+++g+f++k++e++l++yi eyV+Ck+C+sp+tel+k e
    KKY21568.1 184 TKSYKIPPPQCLREGNKKTIFANIADICKRMKRTDEHVTQFLFAELGTSGSVDGSKRLVIKGRFQQKQIENVLRRYIVEYVTCKTCRSPDTELSKgE 280
                   5679*******************************************************************************************99 PP

                   SSCEEEEESSSTC CS
  eIF-5_eIF-2B 104 erllvlkCkaCga 116
                   +rl++++C++Cg+
    KKY21568.1 281 NRLYFVTCNSCGS 293
                   ************8 PP

>> GET2  GET complex subunit GET2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   9.4   4.2e-05      0.15      56     152 ..       8     121 ..       2     148 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.2e-05
        GET2  56 pasttasssssasehddpeiediseiavkpkktasskkksplseesepeapqldqllkqllqqqqqgnsensqdaesstP......dlfsqllkmmkqg 148
                 pa +++  +s a   d   i+d +  + + +++++++++s+++  +e++  ++ +++++++++++++++++s+ +++  P      d+++  +k+ k++
  KKY21568.1   8 PAAERKPRKSVAF-TDGATIVDEDGNVQQSAHEDKTTAESHSTPPTEKDIDEVTDMFAGMAKKKKKSSKSKSTADDEVAPdtdgtaDFDATAMKKKKKK 105
                 4433333333333.23335555555544444444445555555555556668999********999888888888887775555557999999999999 PP

        GET2 149 egg............s 152
                 +++            +
  KKY21568.1 106 SSKpksgddfdaklaE 121
                 9984444444444430 PP

>> zf-HYPF  HypF finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.3   4.7e+03       3       8 ..     192     197 ..     192     201 .. 0.82
   2 ?    4.6   0.1     0.008        29      15      27 ..     257     269 ..     249     272 .. 0.83
   3 ?    5.8   0.0    0.0033        12      21      31 ..     285     295 ..     273     298 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.3
                 HHHHHH CS
     zf-HYPF   3 edClrE 8  
                 ++ClrE
  KKY21568.1 192 PQCLRE 197
                 68***9 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.008
                 TTTT-TT---TTT CS
     zf-HYPF  15 RRfhaqfisCtnC 27 
                 RR+  + ++C+ C
  KKY21568.1 257 RRYIVEYVTCKTC 269
                 ************9 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0033
                 T---TTTS--E CS
     zf-HYPF  21 fisCtnCGPrl 31 
                 f++C++CG r 
  KKY21568.1 285 FVTCNSCGSRR 295
                 89999999885 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   8.5    0.0005       1.8     262     361 ..      32     124 ..       4     129 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0005
        SAPS 262 tseeealedvsdeaskeesaesedltdkdedvsleesksakdenkesdesesdtaeesseededdasseesalaeeteeklrkkpvvGDlLKiklvelk 360
                 + +++a ed+++++s+++ ++++d+++ ++ ++          +k++++s+s+++ +++ + ++d ++   a a+++++k ++kp  GD +  kl+e +
  KKY21568.1  32 NVQQSAHEDKTTAESHSTPPTEKDIDEVTDMFAGM-------AKKKKKSSKSKSTADDEVAPDTDGTADFDATAMKKKKKKSSKPKSGDDFDAKLAEAG 123
                 23344444444444444444433333333333333.......5555556777777888888888888888999999999****************9977 PP

        SAPS 361 i 361
                  
  KKY21568.1 124 G 124
                 5 PP

>> Arc_trans_TRASH  Archaeal TRASH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.99   3.6e+03      11      35 ..     176     200 ..     175     202 .. 0.77
   2 ?    2.2   1.8     0.067   2.4e+02      23      31 ..     263     271 ..     256     278 .. 0.85
   3 ?    9.6   0.3   0.00032       1.1      16      30 ..     278     292 ..     273     294 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.99
  Arc_trans_TRASH  11 ePivyklknkvYyvCCktCkselkk 35 
                      +P ++ ++ k Y +  + C++e  k
       KKY21568.1 176 NPDILSSGTKSYKIPPPQCLREGNK 200
                      6778888999998888899987555 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.067
  Arc_trans_TRASH  23 yvCCktCks 31 
                      yv CktC+s
       KKY21568.1 263 YVTCKTCRS 271
                      899****86 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00032
  Arc_trans_TRASH  16 klknkvYyvCCktCk 30 
                      k  n+ Y+v C++C 
       KKY21568.1 278 KGENRLYFVTCNSCG 292
                      668***********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1449  (0.0808188); expected 358.6 (0.02)
Passed bias filter:                      729  (0.0406604); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2233.10
//
Query:       KKY21569.1  [L=155]
Description: putative coactivator bridging factor 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-27   93.2   1.2    9.9e-27   93.2   1.2    1.6  2  MBF1      Multiprotein bridging factor 1
    1.7e-09   37.6   0.0    2.8e-09   36.9   0.0    1.4  1  HTH_3     Helix-turn-helix
     0.0017   18.7   0.0     0.0036   17.6   0.0    1.5  1  HTH_31    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> MBF1  Multiprotein bridging factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   1.2   1.7e-30   9.9e-27       1      72 []       3      79 ..       3      79 .. 0.97
   2 ?   -3.0   0.0       1.8   1.1e+04      29      40 ..      90     101 ..      87     110 .. 0.56

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 1.7e-30
        MBF1  1 qDWdsvtvigkkar......katvaksesalnaArRsGavvetekKfaagtNkaskaqegqnlaKlDreteelkpkkV 72
                +DWdsvt+ig+kar      ++tv+k++salnaA+RsGa++ tekK ++++N+a++  egq+l+K+Dr+++++kpk+V
  KKY21569.1  3 DDWDSVTRIGSKARsggaapRETVVKGKSALNAAQRSGAIIGTEKK-FGTANSAAARLEGQHLTKVDRSDDIVKPKTV 79
                6*********************************************.899***88888******************98 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.8
        MBF1  29 rRsGavvetekK 40 
                 rR ++ v+ ++K
  KKY21569.1  90 RRNEEGVKMSQK 101
                 444444555555 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   4.7e-13   2.8e-09       6      53 ..      93     141 ..      87     143 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 4.7e-13
                 H.HTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHH CS
       HTH_3   6 k.qlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsld 53 
                 +   ++sq++LA k++ +   ++++E+G + P++++l +++k+L+++l+
  KKY21569.1  93 EeGVKMSQKDLATKCNTTIGVVQDMERGTATPDQKVLAAMEKVLNIKLR 141
                 36789****************************************9985 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     6e-07    0.0036       8      55 ..      89     137 ..      82     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 6e-07
      HTH_31   8 alReraG..LsqeevAerlgvsestlsrlEqGrrgrpspavlealaralg 55 
                  +R+++G  +sq+++A  ++ +   + ++E+G+ + p   vl+a+  +l+
  KKY21569.1  89 KRRNEEGvkMSQKDLATKCNTTIGVVQDMERGTAT-PDQKVLAAMEKVLN 137
                 5788886559************************6.********999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1102.14
//
Query:       KKY21570.1  [L=224]
Description: putative sh3 domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-14   53.8   0.0    1.5e-14   53.3   0.0    1.3  1  SH3_1     SH3 domain
    8.5e-13   47.9   0.0    1.5e-12   47.2   0.0    1.4  1  SH3_9     Variant SH3 domain
    1.8e-08   33.9   0.0    3.2e-08   33.1   0.0    1.3  1  SH3_2     Variant SH3 domain


Domain annotation for each model (and alignments):
>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   2.6e-18   1.5e-14       1      47 [.     100     146 ..     100     147 .. 0.98

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 2.6e-18
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEE CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliP 47 
                 +AlY Y+++++++L ++++D+i+vle+ +++Ww+gr+ +t  eG++P
  KKY21570.1 100 TALYAYAPTDAGDLALQPNDTIQVLEHMNNDWWRGRNERTQLEGIFP 146
                 59**************************************99***** PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   2.5e-16   1.5e-12       1      48 [.     101     150 ..     101     151 .. 0.96

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 2.5e-16
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegsl..tGrtGlvPanyv 48 
                 Aly+y+p+++  L Lq++D+i v+e  +++W++g++  t+  G +P++yv
  KKY21570.1 101 ALYAYAPTDAGDLALQPNDTIQVLEHMNNDWWRGRNerTQLEGIFPRSYV 150
                 8***********************998*******9777***********9 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   5.3e-12   3.2e-08       8      56 ..     105     152 ..     101     153 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 5.3e-12
                 B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEECCCE..EEEEGCGEEE CS
       SH3_2   8 yvgedkseLsfkkGdvikvlslgskdsdgwwegevgGrv..GlfPsslvee 56 
                 y ++d + L ++ +d+i+vl   ++ +++ww+g++ +++  G+fP+s+v +
  KKY21570.1 105 YAPTDAGDLALQPNDTIQVL---EHMNNDWWRGRNERTQleGIFPRSYVNV 152
                 8899****************...************888889********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1885.58
//
Query:       KKY21571.1  [L=170]
Description: putative non-classical export protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-28   98.7  10.6    3.3e-28   98.5  10.6    1.0  1  MARVEL    Membrane-associating domain
  ------ inclusion threshold ------
       0.42   10.9   4.9       0.42   10.9   2.7    2.0  2  DUF3093   Protein of unknown function (DUF3093)
        2.5    8.6   8.8       0.87   10.1   1.5    2.3  2  DUF202    Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5  10.6   5.6e-32   3.3e-28       6     144 .]       7     145 ..       4     145 .. 0.93

  Alignments for each domain:
  == domain 1  score: 98.5 bits;  conditional E-value: 5.6e-32
      MARVEL   6 lgilrilqlvfaiiilgliasliakldqllgspssalnfavfvavfsflyalfllvlylfknsaftsilwplidlivdalaallwlvafialaaglrdi 104
                 ++ lr +++++a+++++li+++i   ++    ++s +nf +f+avf++l+ l+l ++++    +  +i +  + l++dal++l+w++a++alaa l+ +
  KKY21571.1   7 NLGLRAWEWLMALLVMALIGNMI---ADANSGNPSVVNFGMFCAVFAMLTLLYLTAIAV----NESFIGHGALPLALDALNSLFWFCAAVALAAELGVH 98 
                 678********************...4455777************************99....889********************************* PP

      MARVEL 105 sca......fe.snqysasltvrcgqaqaavafgflavllfaasavl 144
                 sc+      ++ ++++ +++++rc +aqa++af ++ +++f+asav+
  KKY21571.1  99 SCSnktytkNNrITNGADNRNKRCTEAQASTAFLWFGWAAFTASAVF 145
                 ***887765338*********************************98 PP

>> DUF3093  Protein of unknown function (DUF3093)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.7   7.1e-05      0.42      10      71 ..      12      73 ..       7      98 .. 0.81
   2 ?   -0.7   0.0      0.25   1.5e+03      36      54 ..     131     149 ..     121     164 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.1e-05
     DUF3093 10 lwwWllaalvalaaalvaaevglavavlvaavlvalavvallalsrtrieVtdgeLrvgrar 71
                 w Wl+a+lv++ ++ ++a ++ + + +v   +++++ ++l+ l  t i+V+++ +  g   
  KKY21571.1 12 AWEWLMALLVMALIGNMIADANSGNPSVVNFGMFCAVFAMLTLLYLTAIAVNESFIGHGALP 73
                699*******999************9999788888888888888889999998766555544 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.25
     DUF3093  36 vlvaavlvalavvallals 54 
                 +l+++ ++  a +++ +++
  KKY21571.1 131 FLWFGWAAFTASAVFSSVG 149
                 3333333333333333333 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.5   0.00014      0.87      13      58 ..      15      57 ..      12      64 .. 0.76
   2 ?    2.8   0.9     0.027   1.6e+02      32      60 ..     110     151 ..      65     157 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00014
      DUF202 13 WlRtslalialglallrffltgepsalgkilglilivlgiltllvg 58
                Wl  +l+++ +g  ++   ++g+ps   + +g++++v+++ltll+ 
  KKY21571.1 15 WLMALLVMALIGNMIADA-NSGNPSV--VNFGMFCAVFAMLTLLYL 57
                666667777777777763.4566666..99**************95 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.027
      DUF202  32 l............tgepsalg.kilglilivlgiltllvglv 60 
                 +            t+ +++++  ++g++++ +++++ +vg++
  KKY21571.1 110 RitngadnrnkrcTEAQASTAfLWFGWAAFTASAVFSSVGAR 151
                 055455555555533333333389999988888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1463.70
//
Query:       KKY21572.1  [L=614]
Description: putative mitochondrial precursor proteins import receptor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-46  151.9  22.4      2e-06   27.4   0.0   11.4 11  TPR_1           Tetratricopeptide repeat
    1.2e-42  140.6  21.1    3.3e-05   23.7   0.1   11.4 11  TPR_2           Tetratricopeptide repeat
    2.1e-25   86.7  22.5     0.0013   18.8   0.0   10.8 10  TPR_8           Tetratricopeptide repeat
    2.8e-24   84.5  16.6    6.4e-06   25.8   0.0    8.4  8  TPR_11          TPR repeat
    2.3e-21   76.2  10.7    1.8e-08   34.9   1.1    6.9  8  TPR_16          Tetratricopeptide repeat
    3.4e-21   74.0   5.1    0.00088   19.5   0.0    9.4  9  TPR_17          Tetratricopeptide repeat
    6.7e-20   71.2  21.0     0.0021   18.3   1.4    8.5  8  TPR_12          Tetratricopeptide repeat
      2e-16   60.3  16.1    7.8e-05   23.1   0.5    6.9  7  TPR_19          Tetratricopeptide repeat
    1.5e-15   56.0  22.8      0.073   13.1   0.1    9.8 10  TPR_7           Tetratricopeptide repeat
    2.8e-14   53.0   9.3      2e-05   24.7   0.2    6.0  6  TPR_9           Tetratricopeptide repeat
    4.8e-13   48.7  17.5      0.013   16.3   0.3    8.9  9  TPR_14          Tetratricopeptide repeat
    8.8e-09   35.5  13.2      0.027   14.7   0.2    5.4  5  ANAPC3          Anaphase-promoting complex, cyclosome, subuni
    4.6e-08   32.7  18.0      0.078   12.9   0.1    8.2  8  TPR_10          Tetratricopeptide repeat
    1.9e-07   30.8   5.8    1.3e-06   28.0   0.6    3.0  2  TPR_MalT        MalT-like TPR region
    2.1e-06   27.2   7.0       0.56    9.4   1.1    5.2  4  TPR_15          Tetratricopeptide repeat
     0.0016   18.6   4.0        6.3    7.0   0.0    4.8  5  HemY_N          HemY protein N-terminus
     0.0023   18.5  22.5        5.3    7.9   0.0    9.0  8  TPR_6           Tetratricopeptide repeat
     0.0054   16.8  11.1       0.28   11.3   0.1    5.0  6  MAS20           MAS20 protein import receptor
     0.0059   17.2   1.9        9.9    7.0   0.0    4.9  4  Sel1            Sel1 repeat
     0.0067   16.5  12.5        5.3    7.2   0.1    6.6  6  MIT             MIT (microtubule interacting and transport) d
  ------ inclusion threshold ------
      0.012   15.7   7.2        6.7    6.8   0.0    5.4  5  DUF3856         Domain of Unknown Function (DUF3856)
      0.018   14.7   0.5       0.33   10.6   0.2    2.6  2  HrpB1_HrpK      Bacterial type III secretion protein (HrpB1_H
      0.019   15.4   7.6        5.6    7.4   0.2    4.4  5  BTAD            Bacterial transcriptional activator domain
      0.025   13.3   2.3        2.3    6.9   0.0    2.9  3  DUF3808         Protein of unknown function (DUF3808)
      0.026   13.3   0.6        0.1   11.3   0.1    2.1  2  PknG_TPR        Protein kinase G tetratricopeptide repeat
      0.037   13.4   0.3       0.11   11.9   0.1    1.7  1  TAF1_subA       TAF RNA Polymerase I subunit A
      0.046   14.0   1.1       0.96    9.8   0.2    3.4  2  preATP-grasp_3  pre ATP-grasp 3 domain
       0.05   13.2   0.1      0.085   12.5   0.1    1.2  1  DUF5539         Family of unknown function (DUF5539)
       0.11   11.9  15.9        1.5    8.3   0.1    5.8  6  SHNi-TPR        SHNi-TPR
       0.14   12.5   1.3         72    4.0   0.0    4.9  5  PPR             PPR repeat
        1.6    9.1  10.1        4.5    7.7   0.9    4.9  5  TPR_20          Tetratricopeptide repeat
        4.2    6.2  27.2       0.02   13.8   2.9    4.4  4  NARP1           NMDA receptor-regulated protein 1
        9.7    7.2  11.6         65    4.6   0.1    5.9  5  TPR_4           Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.2    0.0014      0.75       8      33 ..     128     153 ..     125     154 .. 0.87
   2 !   18.9   0.0   1.7e-06   0.00095       3      34 .]     156     187 ..     154     187 .. 0.95
   3 !   21.2   0.1   3.3e-07   0.00018       1      25 [.     188     212 ..     188     218 .. 0.92
   4 !    8.0   0.1     0.005       2.7      17      30 ..     304     317 ..     304     318 .. 0.97
   5 !   12.2   0.0   0.00022      0.12       1      32 [.     325     356 ..     325     358 .. 0.95
   6 !   12.9   0.0   0.00014     0.077       3      33 ..     361     391 ..     359     392 .. 0.90
   7 !   27.4   0.0   3.7e-09     2e-06       2      34 .]     394     426 ..     393     426 .. 0.95
   8 ?    2.5   0.0      0.27   1.5e+02       4      29 ..     430     455 ..     427     457 .. 0.87
   9 !   12.7   0.3   0.00016     0.084       2      30 ..     462     490 ..     461     493 .. 0.86
  10 !   15.8   0.2   1.7e-05     0.009      11      34 .]     512     535 ..     504     535 .. 0.87
  11 !   16.3   0.0   1.2e-05    0.0065       7      31 ..     542     566 ..     540     569 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0014
                 HHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   8 GnayfklgkydeAleyyekALelnPn 33 
                 Gn  f  ++y+ A++ y kA+   P+
  KKY21572.1 128 GNKAFGSKDYNNAIDLYGKAILCKPD 153
                 66677889*************88887 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                  + n++++y  lg++++ +e+   A++ +P++
  KKY21572.1 156 YYSNRAACYNVLGEWEKVIEDTTAAVSMDPEY 187
                 69****************************86 PP

  == domain 3  score: 21.2 bits;  conditional E-value: 3.3e-07
                 HHHHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyye 25 
                 +kal+++++ay klg++ eAl +y 
  KKY21572.1 188 VKALNRRAHAYEKLGMFSEALLDYT 212
                 58*********************97 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.005
                 HHHHHHHHHHHHHH CS
       TPR_1  17 ydeAleyyekALel 30 
                 y+eA +++ekA+el
  KKY21572.1 304 YEEATQFFEKAIEL 317
                 9************8 PP

  == domain 5  score: 12.2 bits;  conditional E-value: 0.00022
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnP 32 
                 a a++ ++   +  g+  +Al++  k + l+P
  KKY21572.1 325 AFAYNMRATFRYLEGDTTQALADLTKSIALDP 356
                 679****************************9 PP

  == domain 6  score: 12.9 bits;  conditional E-value: 0.00014
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPn 33 
                 ++  ++ ++++lg+ + A +++e+A   n +
  KKY21572.1 361 SYIKRASIHLELGNREAAADDFEQATAQNKD 391
                 68899********************998876 PP

  == domain 7  score: 27.4 bits;  conditional E-value: 3.7e-09
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 +++y +++++f lg++ eA ++y+k + l+ ++
  KKY21572.1 394 DIFYHRAQLHFILGEFAEAAKDYQKSIDLDRDF 426
                 789***************************986 PP

  == domain 8  score: 2.5 bits;  conditional E-value: 0.27
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALe 29 
                 + +lG++ +k+g      + ++++++
  KKY21572.1 430 HIQLGVTQYKMGSVASSMATFRRCIK 455
                 789*********99999999999886 PP

  == domain 9  score: 12.7 bits;  conditional E-value: 0.00016
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALel 30 
                 ++++  G +++ ++ky+eA+e +e A+  
  KKY21572.1 462 DVYNYYGELLLDQQKYQEAIEKFETAIDM 490
                 566677999*****************976 PP

  == domain 10  score: 15.8 bits;  conditional E-value: 1.7e-05
                 HHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  11 yfklgkydeAleyyekALelnPnn 34 
                 ++ +++++eA++ ++kAL ++P++
  KKY21572.1 512 FQWKQDFKEAEDLCQKALIIDPEC 535
                 567889****************85 PP

  == domain 11  score: 16.3 bits;  conditional E-value: 1.2e-05
                 HHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   7 lGnayfklgkydeAleyyekALeln 31 
                 ++++++++gk  +Al+y+e+A el 
  KKY21572.1 542 MAQLLLQQGKVTDALKYFERAAELS 566
                 6899*****************9996 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1     0.002       1.1       5      33 ..     125     153 ..     121     154 .. 0.87
   2 !    8.2   0.0    0.0055         3       3      34 .]     156     187 ..     154     187 .. 0.94
   3 !   15.4   0.1   2.6e-05     0.014       2      28 ..     189     215 ..     188     219 .. 0.89
   4 ?    6.7   0.1     0.016       8.7      17      30 ..     304     317 ..     304     319 .. 0.95
   5 !   11.7   0.0   0.00042      0.23       1      32 [.     325     356 ..     325     358 .. 0.95
   6 !   15.5   0.1   2.5e-05     0.013       4      34 .]     362     392 ..     360     392 .. 0.92
   7 !   23.7   0.1     6e-08   3.3e-05       2      33 ..     394     425 ..     393     426 .. 0.93
   8 ?    2.6   0.0      0.33   1.8e+02       3      29 ..     429     455 ..     427     459 .. 0.90
   9 !   21.6   0.1   2.9e-07   0.00016       1      30 [.     461     490 ..     461     493 .. 0.92
  10 !   11.7   0.1   0.00042      0.23      14      33 ..     515     534 ..     504     535 .. 0.90
  11 !   18.3   0.1   3.2e-06    0.0017       6      32 ..     541     567 ..     537     569 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.002
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPn 33 
                  + G+ ++ ++dy+ A++++ kA+   P+
  KKY21572.1 125 KAAGNKAFGSKDYNNAIDLYGKAILCKPD 153
                 56799999****************98886 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0055
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 ++ n++ +y  lg++e+ +e+  +A++ dP++
  KKY21572.1 156 YYSNRAACYNVLGEWEKVIEDTTAAVSMDPEY 187
                 799***************************85 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 2.6e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAl 28 
                 +al++++ ay+klg + eAl ++ ++ 
  KKY21572.1 189 KALNRRAHAYEKLGMFSEALLDYTASC 215
                 79********************98776 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.016
       TPR_2  17 yeeAleafekAlel 30 
                 yeeA ++fekA+el
  KKY21572.1 304 YEEATQFFEKAIEL 317
                 9***********98 PP

  == domain 5  score: 11.7 bits;  conditional E-value: 0.00042
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldP 32 
                 a a+++++   y  gd  +Al+++ k+++ldP
  KKY21572.1 325 AFAYNMRATFRYLEGDTTQALADLTKSIALDP 356
                 689****************************9 PP

  == domain 6  score: 15.5 bits;  conditional E-value: 2.5e-05
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPnn 34 
                 +  ++ ++++lg+ e A+++fe+A + + ++
  KKY21572.1 362 YIKRASIHLELGNREAAADDFEQATAQNKDD 392
                 7899*********************999875 PP

  == domain 7  score: 23.7 bits;  conditional E-value: 6e-08
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 ++ y ++++++ lg+++eA+++++k++ ld +
  KKY21572.1 394 DIFYHRAQLHFILGEFAEAAKDYQKSIDLDRD 425
                 678**************************976 PP

  == domain 8  score: 2.6 bits;  conditional E-value: 0.33
       TPR_2   3 alynlGlayyklgdyeeAleafekAle 29 
                  + +lG   yk+g  +   + f+++++
  KKY21572.1 429 SHIQLGVTQYKMGSVASSMATFRRCIK 455
                 5889********************998 PP

  == domain 9  score: 21.6 bits;  conditional E-value: 2.9e-07
       TPR_2   1 aealynlGlayyklgdyeeAleafekAlel 30 
                 ++++++ G++++ +++y+eA+e fe A+  
  KKY21572.1 461 PDVYNYYGELLLDQQKYQEAIEKFETAIDM 490
                 579************************986 PP

  == domain 10  score: 11.7 bits;  conditional E-value: 0.00042
       TPR_2  14 lgdyeeAleafekAleldPn 33 
                 ++d++eA+++++kAl +dP+
  KKY21572.1 515 KQDFKEAEDLCQKALIIDPE 534
                 689****************8 PP

  == domain 11  score: 18.3 bits;  conditional E-value: 3.2e-06
       TPR_2   6 nlGlayyklgdyeeAleafekAleldP 32 
                  ++++++++g+  +Al++fe+A el  
  KKY21572.1 541 TMAQLLLQQGKVTDALKYFERAAELSR 567
                 589*********************975 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.14        74      14      32 ..     134     152 ..     131     154 .. 0.83
   2 !    8.4   0.1    0.0052       2.8       2      24 ..     189     211 ..     188     215 .. 0.87
   3 ?    6.2   0.3     0.027        14      17      30 ..     304     317 ..     304     317 .. 0.95
   4 ?    5.9   0.0     0.033        18       3      33 ..     327     357 ..     327     358 .. 0.90
   5 !   16.6   0.1   1.2e-05    0.0067       2      33 ..     360     391 ..     359     392 .. 0.91
   6 !   18.8   0.0   2.4e-06    0.0013       2      33 ..     394     425 ..     393     426 .. 0.94
   7 ?    6.1   0.0     0.028        15       5      29 ..     431     455 ..     429     456 .. 0.92
   8 !   10.9   0.2   0.00081      0.44       3      33 ..     463     493 ..     461     494 .. 0.90
   9 ?    4.4   0.1     0.094        51      14      34 .]     515     535 ..     504     535 .. 0.81
  10 !   11.8   0.0   0.00042      0.23       7      32 ..     542     567 ..     538     569 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.14
                 TT-HHHHHHHHHHHHHHHH CS
       TPR_8  14 lgdyeeAkeyyekaleldp 32 
                  +dy++A+  y ka+  +p
  KKY21572.1 134 SKDYNNAIDLYGKAILCKP 152
                 69************96555 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0052
                 CHHHHHHHHHHHTT-HHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyy 24 
                 +a+++ +++y+klg + eA   y
  KKY21572.1 189 KALNRRAHAYEKLGMFSEALLDY 211
                 799***************97766 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.027
                 HHHHHHHHHHHHHH CS
       TPR_8  17 yeeAkeyyekalel 30 
                 yeeA +++eka+el
  KKY21572.1 304 YEEATQFFEKAIEL 317
                 8***********97 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.033
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ay++ +      gd  +A + + k + ldp+
  KKY21572.1 327 AYNMRATFRYLEGDTTQALADLTKSIALDPA 357
                 688888888889*****************96 PP

  == domain 5  score: 16.6 bits;  conditional E-value: 1.2e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ++y + +si+l+lg+ e+A   +e+a+  ++d
  KKY21572.1 360 QSYIKRASIHLELGNREAAADDFEQATAQNKD 391
                 79************************987776 PP

  == domain 6  score: 18.8 bits;  conditional E-value: 2.4e-06
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ++ y+ +++++ lg++ eA + y+k ++ld+d
  KKY21572.1 394 DIFYHRAQLHFILGEFAEAAKDYQKSIDLDRD 425
                 5789**************************97 PP

  == domain 7  score: 6.1 bits;  conditional E-value: 0.028
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekale 29 
                  +lg +  k+g   +++++++++++
  KKY21572.1 431 IQLGVTQYKMGSVASSMATFRRCIK 455
                 689********************97 PP

  == domain 8  score: 10.9 bits;  conditional E-value: 0.00081
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +y+  g ++l++++y+eA+e +e a++++++
  KKY21572.1 463 VYNYYGELLLDQQKYQEAIEKFETAIDMEKQ 493
                 677789*********************9886 PP

  == domain 9  score: 4.4 bits;  conditional E-value: 0.094
                 TT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  14 lgdyeeAkeyyekaleldpdn 34 
                 ++d++eA+  ++kal +dp++
  KKY21572.1 515 KQDFKEAEDLCQKALIIDPEC 535
                 679************999986 PP

  == domain 10  score: 11.8 bits;  conditional E-value: 0.00042
                 HHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldp 32 
                 +++++l++g+   A +y+e+a el++
  KKY21572.1 542 MAQLLLQQGKVTDALKYFERAAELSR 567
                 79*********************997 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.5     0.015       8.3       7      26 ..     134     153 ..     128     165 .. 0.75
   2 !   11.2   0.0   0.00042      0.23       7      42 .]     167     202 ..     163     202 .. 0.88
   3 ?   -0.7   0.0       2.2   1.2e+03      10      23 ..     304     317 ..     303     317 .. 0.91
   4 !   11.9   0.0   0.00025      0.14       5      42 .]     336     373 ..     335     373 .. 0.94
   5 !   21.3   0.1     3e-07   0.00016       3      40 ..     368     405 ..     366     407 .. 0.91
   6 !   25.8   0.0   1.2e-08   6.4e-06       3      42 .]     402     441 ..     400     441 .. 0.95
   7 !   12.4   0.1   0.00018     0.097       1      22 [.     468     489 ..     468     494 .. 0.90
   8 ?    5.9   0.1     0.019        10       3      24 ..     545     566 ..     543     575 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.015
      TPR_11   7 qGkyeeAieaYkkAlkldPd 26 
                   +y++Ai  Y kA+  +Pd
  KKY21572.1 134 SKDYNNAIDLYGKAILCKPD 153
                 679************77665 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00042
      TPR_11   7 qGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 +G++e+ ie+  +A+  dP+++ a++ +++ay k+G
  KKY21572.1 167 LGEWEKVIEDTTAAVSMDPEYVKALNRRAHAYEKLG 202
                 5777777777789*********************99 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.2
      TPR_11  10 yeeAieaYkkAlkl 23 
                 yeeA + ++kA++l
  KKY21572.1 304 YEEATQFFEKAIEL 317
                 89999999999997 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 0.00025
      TPR_11   5 yeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 y  G+ ++A++++ k ++ldP     y +++ +++++G
  KKY21572.1 336 YLEGDTTQALADLTKSIALDPALTQSYIKRASIHLELG 373
                 678******************************99998 PP

  == domain 5  score: 21.3 bits;  conditional E-value: 3e-07
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayyk 40 
                 +  e+G+ e+A  ++++A + + d+++++y+++++++ 
  KKY21572.1 368 IHLELGNREAAADDFEQATAQNKDDPDIFYHRAQLHFI 405
                 67899*****************************9985 PP

  == domain 6  score: 25.8 bits;  conditional E-value: 1.2e-08
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 + + +G++ eA ++Y+k ++ld d+   +  LG+++yk+G
  KKY21572.1 402 LHFILGEFAEAAKDYQKSIDLDRDFIFSHIQLGVTQYKMG 441
                 67899**********************************9 PP

  == domain 7  score: 12.4 bits;  conditional E-value: 0.00018
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G ++ +q+ky eAie++++A++
  KKY21572.1 468 GELLLDQQKYQEAIEKFETAID 489
                 77899***************97 PP

  == domain 8  score: 5.9 bits;  conditional E-value: 0.019
      TPR_11   3 ayyeqGkyeeAieaYkkAlkld 24 
                 ++ +qGk ++A++ +++A +l+
  KKY21572.1 545 LLLQQGKVTDALKYFERAAELS 566
                 689***************9997 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0         1   5.6e+02       2      50 ..     126     170 ..     125     172 .. 0.72
   2 ?    4.8   0.1     0.082        45      21      57 ..     178     211 ..     167     218 .. 0.80
   3 ?   -0.1   0.1       2.8   1.5e+03      33      65 ..     324     356 ..     303     359 .. 0.63
   4 ?    5.4   0.0     0.054        29      11      49 ..     339     374 ..     330     374 .. 0.95
   5 !   34.9   1.1   3.3e-11   1.8e-08       2      62 ..     364     421 ..     363     425 .. 0.79
   6 !   16.9   0.0   1.3e-05    0.0073       6      62 ..     436     489 ..     431     493 .. 0.88
   7 ?    1.3   0.0       1.1   5.8e+02      48      65 ..     516     533 ..     505     534 .. 0.78
   8 !   15.1   0.2   5.1e-05     0.027       3      27 ..     542     566 ..     540     580 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 1
      TPR_16   2 alaraalragdyddAaaal.eaalkrdpssPdaaeAllllgdaalrqgrl 50 
                 a+++ a+ ++dy  A+ ++ +a l +   +P+    + +++ ++ ++g++
  KKY21572.1 126 AAGNKAFGSKDYNNAIDLYgKAILCKP--DPV---YYSNRAACYNVLGEW 170
                 578889999**********55555555..455...777777777777766 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.082
      TPR_16  21 eaalkrdpssPdaaeAllllgdaalrqgrlaeAaaly 57 
                 +aa+ +d   P+ + Al+ ++ a+ ++g + eA+  y
  KKY21572.1 178 TAAVSMD---PEYVKALNRRAHAYEKLGMFSEALLDY 211
                 4566666...******************999999444 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 2.8
      TPR_16  33 aaeAllllgdaalrqgrlaeAaalyraalraap 65 
                  a A++ ++  ++  g+ + A+a + + ++ +p
  KKY21572.1 324 EAFAYNMRATFRYLEGDTTQALADLTKSIALDP 356
                 455777777777777777777765555555555 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.054
      TPR_16  11 gdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgr 49 
                 gd ++A+a l+  +++d   P+  +++  ++ ++l++g+
  KKY21572.1 339 GDTTQALADLTKSIALD---PALTQSYIKRASIHLELGN 374
                 899**************...***************9986 PP

  == domain 5  score: 34.9 bits;  conditional E-value: 3.3e-11
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalr 62 
                 ++a ++l++g+ ++Aa  +e+a+++++++Pd     ++++++++ +g++aeAa  y++ ++
  KKY21572.1 364 KRASIHLELGNREAAADDFEQATAQNKDDPD---IFYHRAQLHFILGEFAEAAKDYQKSID 421
                 68999*********************87777...777777777777777777766655544 PP

  == domain 6  score: 16.9 bits;  conditional E-value: 1.3e-05
      TPR_16   6 aalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalr 62 
                   ++ g  +   a +++ +k++      ++ ++++g+++l q+ ++eA++ ++ a++
  KKY21572.1 436 TQYKMGSVASSMATFRRCIKNF---DKVPDVYNYYGELLLDQQKYQEAIEKFETAID 489
                 66888999999999********...88999*******************99999875 PP

  == domain 7  score: 1.3 bits;  conditional E-value: 1.1
      TPR_16  48 grlaeAaalyraalraap 65 
                 ++++eA++l+++al  +p
  KKY21572.1 516 QDFKEAEDLCQKALIIDP 533
                 699**********98887 PP

  == domain 8  score: 15.1 bits;  conditional E-value: 5.1e-05
      TPR_16   3 laraalragdyddAaaaleaalkrd 27 
                 +a+++l++g+ +dA++++e+a ++ 
  KKY21572.1 542 MAQLLLQQGKVTDALKYFERAAELS 566
                 799******************9876 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.78   4.3e+02       2      30 ..     144     171 ..     143     175 .. 0.70
   2 !   11.3   0.0   0.00069      0.38       4      32 ..     179     207 ..     178     208 .. 0.90
   3 ?    5.2   0.0     0.061        33       3      33 ..     312     345 ..     310     346 .. 0.73
   4 !    7.7   0.0    0.0093         5       3      28 ..     349     374 ..     347     379 .. 0.90
   5 !   10.9   0.0   0.00089      0.48       2      32 ..     382     412 ..     381     414 .. 0.94
   6 ?    4.8   0.0     0.082        44       2      27 ..     416     441 ..     415     446 .. 0.94
   7 !   19.5   0.0   1.6e-06   0.00088       2      34 .]     450     482 ..     449     482 .. 0.95
   8 ?    4.1   0.0      0.14        74       1      33 [.     524     556 ..     524     557 .. 0.90
   9 ?   -0.7   0.0       4.5   2.4e+03       1      26 [.     558     583 ..     558     587 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.78
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlm 30 
                 y ka+ + P +++ y n+A ++  +G+++
  KKY21572.1 144 YGKAILCKP-DPVYYSNRAACYNVLGEWE 171
                 667775555.6777888888888888765 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00069
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtA 32 
                  a+  dP +++a+n +A +++k+G + +A
  KKY21572.1 179 AAVSMDPEYVKALNRRAHAYEKLGMFSEA 207
                 57889*******************98877 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.061
      TPR_17   3 lkalel.d.Pnn.adaynnLAelllknGdlmtAr 33 
                 +ka+el d   + a ayn++A++ +  Gd+ +A+
  KKY21572.1 312 EKAIELgDlAEHeAFAYNMRATFRYLEGDTTQAL 345
                 5666664233334889**************9997 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0093
      TPR_17   3 lkaleldPnnadaynnLAelllknGd 28 
                 +k+++ldP    +y  +A ++l++G+
  KKY21572.1 349 TKSIALDPALTQSYIKRASIHLELGN 374
                 79*********************998 PP

  == domain 5  score: 10.9 bits;  conditional E-value: 0.00089
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 +++a +++++++d ++ +A+l+  +G++++A
  KKY21572.1 382 FEQATAQNKDDPDIFYHRAQLHFILGEFAEA 412
                 899***********************99988 PP

  == domain 6  score: 4.8 bits;  conditional E-value: 0.082
      TPR_17   2 ylkaleldPnnadaynnLAelllknG 27 
                 y+k+++ld +   ++ +L+++++k G
  KKY21572.1 416 YQKSIDLDRDFIFSHIQLGVTQYKMG 441
                 9********************99887 PP

  == domain 7  score: 19.5 bits;  conditional E-value: 1.6e-06
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 +++++++  + +d+yn+++elll + ++++A++
  KKY21572.1 450 FRRCIKNFDKVPDVYNYYGELLLDQQKYQEAIE 482
                 89*****************************86 PP

  == domain 8  score: 4.1 bits;  conditional E-value: 0.14
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 l++kal +dP    a   +A+lll++G+  +A+
  KKY21572.1 524 LCQKALIIDPECDIAVATMAQLLLQQGKVTDAL 556
                 68999999999999999**********988886 PP

  == domain 9  score: -0.7 bits;  conditional E-value: 4.5
      TPR_17   1 lylkaleldPnnadaynnLAelllkn 26 
                 ++++a+el  +  ++ n L ++ + +
  KKY21572.1 558 YFERAAELSRTEGEVINALSYAEATR 583
                 589****9999999999999887765 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.32   1.7e+02       6      20 ..     157     171 ..     121     184 .. 0.60
   2 ?    6.1   0.3     0.025        13       6      69 ..     157     212 ..     154     215 .. 0.76
   3 !   15.0   0.9   4.1e-05     0.022      15      75 ..     299     355 ..     292     357 .. 0.89
   4 !    9.3   0.2    0.0025       1.4      43      73 ..     357     387 ..     354     391 .. 0.88
   5 !   10.8   0.0   0.00084      0.46       6      55 ..     396     444 ..     392     458 .. 0.78
   6 !   12.7   0.0   0.00022      0.12       5      33 ..     463     491 ..     459     496 .. 0.80
   7 !   18.3   1.4   3.8e-06    0.0021       7      75 ..     505     566 ..     500     567 .. 0.85
   8 !   16.6   0.2   1.4e-05    0.0074       8      36 ..     541     569 ..     533     584 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.32
      TPR_12   6 lnnlaavlrrlgryd 20 
                 ++n+aa+++ lg+++
  KKY21572.1 157 YSNRAACYNVLGEWE 171
                 334555555555554 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.025
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelle 69 
                 ++n+aa+++ lg++++ +e   +a+ +      p+   ++ +l+  + +y++lg + eAl  ++
  KKY21572.1 157 YSNRAACYNVLGEWEKVIEDTTAAVSMD-----PE---YVKALNRRAHAYEKLGMFSEALLDYT 212
                 4577888888888888777777776666.....65...58899999999999999999987665 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 4.1e-05
      TPR_12  15 rlgr.ydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 r g+ y+eA +++eka+e+   l   +h  +a +++  ++  ++ g++ +Al+ l++++a++
  KKY21572.1 299 RTGEgYEEATQFFEKAIELG-DL--AEH--EAFAYNMRATFRYLEGDTTQALADLTKSIALD 355
                 55666***************.45..789..*****************************987 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.0025
      TPR_12  43 ltattlrnLgrlyralgryeeAlelleeala 73 
                 ++ ++++  + ++++lg+ e+A + +e+a+a
  KKY21572.1 357 ALTQSYIKRASIHLELGNREAAADDFEQATA 387
                 5668999**********************98 PP

  == domain 5  score: 10.8 bits;  conditional E-value: 0.00084
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrly 55 
                  +++a++++ lg+++eA + ++k++++ r      h ++  t++ +g + 
  KKY21572.1 396 FYHRAQLHFILGEFAEAAKDYQKSIDLDRDFIFS-HIQLGVTQYKMGSVA 444
                 5688999999999999999999999998766443.667777766666665 PP

  == domain 6  score: 12.7 bits;  conditional E-value: 0.00022
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleia 33 
                 ++n ++++l+ +++y+eA+e +e+a+++ 
  KKY21572.1 463 VYNYYGELLLDQQKYQEAIEKFETAIDME 491
                 67779999999999999999999998765 PP

  == domain 7  score: 18.3 bits;  conditional E-value: 3.8e-06
      TPR_12   7 nnlaavl.rrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                  n a++l ++ +++ eA++l++kal i      p+     ++  ++++l++++g+  +Al+++e+a ++ 
  KKY21572.1 505 INKALALfQWKQDFKEAEDLCQKALIID-----PEC---DIAVATMAQLLLQQGKVTDALKYFERAAELS 566
                 47788885669*************9999.....664...45778899*******************9875 PP

  == domain 8  score: 16.6 bits;  conditional E-value: 1.4e-05
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrl 36 
                  +a++l+++g+ ++Al+++e+a e+ r  
  KKY21572.1 541 TMAQLLLQQGKVTDALKYFERAAELSRTE 569
                 399*********************99654 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.61   3.3e+02       2      22 ..     132     152 ..     131     175 .. 0.70
   2 !    8.2   0.0    0.0064       3.5      16      44 ..     179     207 ..     168     209 .. 0.92
   3 ?    2.7   0.2      0.34   1.8e+02       7      46 ..     304     346 ..     302     356 .. 0.57
   4 !    9.1   0.3    0.0033       1.8       4      44 ..     338     378 ..     335     380 .. 0.88
   5 !   18.8   0.8   3.2e-06    0.0017       2      46 ..     370     414 ..     369     426 .. 0.91
   6 !    8.7   0.0    0.0046       2.5       1      22 [.     471     492 ..     437     500 .. 0.76
   7 !   23.1   0.5   1.4e-07   7.8e-05       5      56 ..     516     567 ..     515     577 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.61
      TPR_19   2 laegdyaeAlalleqalqedp 22 
                 + ++dy +A++l+ +a+  +p
  KKY21572.1 132 FGSKDYNNAIDLYGKAILCKP 152
                 67899*******999965555 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0064
      TPR_19  16 qalqedpknaearllLAeallalgqldeA 44 
                 +a + dp++  a+ + A a+ +lg + eA
  KKY21572.1 179 AAVSMDPEYVKALNRRAHAYEKLGMFSEA 207
                 57899***********************9 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.34
      TPR_19   7 yaeAlalleqalqe..dpknaearllL.AeallalgqldeAea 46 
                 y+eA +++e+a++    +++++ ++++ A   +  g++++A a
  KKY21572.1 304 YEEATQFFEKAIELgdLAEHEAFAYNMrATFRYLEGDTTQALA 346
                 5666677777653333666666666655666666666666654 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.0033
      TPR_19   4 egdyaeAlalleqalqedpk..naearllLAeallalgqldeA 44 
                 egd ++Ala l++ ++ dp   +++++   A ++l+lg+ ++A
  KKY21572.1 338 EGDTTQALADLTKSIALDPAltQSYIKR--ASIHLELGNREAA 378
                 8*******************66666666..*********9998 PP

  == domain 5  score: 18.8 bits;  conditional E-value: 3.2e-06
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAea 46 
                 l+ g+ ++A++ +eqa +++ +++++ +  A++++ lg+++eA +
  KKY21572.1 370 LELGNREAAADDFEQATAQNKDDPDIFYHRAQLHFILGEFAEAAK 414
                 677999*************************************75 PP

  == domain 6  score: 8.7 bits;  conditional E-value: 0.0046
      TPR_19   1 llaegdyaeAlalleqalqedp 22 
                 ll++++y+eA++ +e a++ + 
  KKY21572.1 471 LLDQQKYQEAIEKFETAIDMEK 492
                 6777888888888777776655 PP

  == domain 7  score: 23.1 bits;  conditional E-value: 1.4e-07
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedp 56 
                 +d+ eA +l ++al  dp+ + a + +A++ll++g +++A +  +++ e  +
  KKY21572.1 516 QDFKEAEDLCQKALIIDPECDIAVATMAQLLLQQGKVTDALKYFERAAELSR 567
                 79*****************9999999****************9999988766 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.88   4.8e+02      14      27 ..     136     147 ..     134     153 .. 0.88
   2 ?   -0.0   0.0       2.2   1.2e+03       5      20 ..     160     175 ..     157     186 .. 0.70
   3 !    7.4   0.2    0.0092         5       1      24 [.     190     213 ..     190     215 .. 0.90
   4 ?    0.4   0.1       1.6   8.6e+02      15      28 ..     304     317 ..     304     324 .. 0.79
   5 ?    2.0   0.1      0.48   2.6e+02       7      30 ..     332     356 ..     327     360 .. 0.76
   6 !   12.5   0.0   0.00021      0.11       6      34 ..     366     392 ..     361     395 .. 0.83
   7 !    7.7   0.1    0.0071       3.9       6      31 ..     400     425 ..     396     426 .. 0.87
   8 !   12.0   0.1   0.00031      0.17       3      29 ..     465     491 ..     463     495 .. 0.80
   9 ?    5.3   0.0     0.043        23       6      26 ..     508     529 ..     504     537 .. 0.74
  10 !   13.1   0.1   0.00014     0.073       5      34 ..     542     571 ..     538     573 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.88
       TPR_7  14 dyeeAielyeqsLa 27 
                 dy +Ai+ly +  a
  KKY21572.1 136 DYNNAIDLYGK--A 147
                 899******99..5 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 2.2
       TPR_7   5 LarlysrlGdyeeAie 20 
                  a +y  lG++e+ ie
  KKY21572.1 160 RAACYNVLGEWEKVIE 175
                 55556669*****998 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0092
       TPR_7   1 aLlnLarlysrlGdyeeAielyeq 24 
                 aL++ a++y++lG ++eA+  y++
  KKY21572.1 190 ALNRRAHAYEKLGMFSEALLDYTA 213
                 79999*************977775 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 1.6
       TPR_7  15 yeeAielyeqsLal 28 
                 yeeA +++e++++l
  KKY21572.1 304 YEEATQFFEKAIEL 317
                 899999***95544 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.48
       TPR_7   7 rlysr.lGdyeeAielyeqsLaltk 30 
                  +++  +Gd+ +A+  +++s+al+ 
  KKY21572.1 332 ATFRYlEGDTTQALADLTKSIALDP 356
                 4555558************888875 PP

  == domain 6  score: 12.5 bits;  conditional E-value: 0.00021
       TPR_7   6 arlysrlGdyeeAielyeqsLaltkdped 34 
                 a+++ +lG++e A++ +eq  a++   +d
  KKY21572.1 366 ASIHLELGNREAAADDFEQ--ATAQNKDD 392
                 99*****************..98865554 PP

  == domain 7  score: 7.7 bits;  conditional E-value: 0.0071
       TPR_7   6 arlysrlGdyeeAielyeqsLaltkd 31 
                 a+l++ lG+++eA++ y++s+ l++d
  KKY21572.1 400 AQLHFILGEFAEAAKDYQKSIDLDRD 425
                 788888*************9998887 PP

  == domain 8  score: 12.0 bits;  conditional E-value: 0.00031
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLalt 29 
                 ++ ++l  ++++y+eAie +e ++ ++
  KKY21572.1 465 NYYGELLLDQQKYQEAIEKFETAIDME 491
                 6668999***************55444 PP

  == domain 9  score: 5.3 bits;  conditional E-value: 0.043
       TPR_7   6 arlysr.lGdyeeAielyeqsL 26 
                 a + ++  +d++eA++l++++L
  KKY21572.1 508 ALALFQwKQDFKEAEDLCQKAL 529
                 556666679***********55 PP

  == domain 10  score: 13.1 bits;  conditional E-value: 0.00014
       TPR_7   5 LarlysrlGdyeeAielyeqsLaltkdped 34 
                 +a+l  ++G+  +A++++e++ +l + +++
  KKY21572.1 542 MAQLLLQQGKVTDALKYFERAAELSRTEGE 571
                 89******************9999888776 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.012       6.6       9      53 ..     168     212 ..     134     233 .. 0.89
   2 !   24.7   0.2   3.6e-08     2e-05       9      64 ..     339     394 ..     336     396 .. 0.95
   3 !   10.8   0.1   0.00078      0.42      27      60 ..     391     424 ..     388     426 .. 0.91
   4 ?   -1.6   0.0       5.9   3.2e+03      35      58 ..     433     456 ..     430     469 .. 0.83
   5 ?    1.7   0.0      0.53   2.9e+02      36      59 ..     468     491 ..     458     496 .. 0.87
   6 !   12.4   0.5   0.00024      0.13       8      61 ..     515     568 ..     508     587 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.012
       TPR_9   9 edweralavverllllaPddpeerrdRGlllaqlGclsaAladLe 53 
                  +we+ ++     + ++P+ +  +  R+ ++++lG +s+Al d  
  KKY21572.1 168 GEWEKVIEDTTAAVSMDPEYVKALNRRAHAYEKLGMFSEALLDYT 212
                 57888889999999999999999999*************998875 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 3.6e-08
       TPR_9   9 edweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64 
                  d  +ala +   ++l+P   + +  R+ ++ +lG+ +aA++d+e++ a++ d+pd
  KKY21572.1 339 GDTTQALADLTKSIALDPALTQSYIKRASIHLELGNREAAADDFEQATAQNKDDPD 394
                 677899************************************************99 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00078
       TPR_9  27 ddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 ddp+  + R++l++ lG +++A++d +  ++l+ 
  KKY21572.1 391 DDPDIFYHRAQLHFILGEFAEAAKDYQKSIDLDR 424
                 89999**********************9998875 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 5.9
       TPR_9  35 RGlllaqlGclsaAladLeaylal 58 
                  G+ ++++G ++  +a + +++ +
  KKY21572.1 433 LGVTQYKMGSVASSMATFRRCIKN 456
                 68999***********99999965 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.53
       TPR_9  36 GlllaqlGclsaAladLeaylala 59 
                 G ll  +  +++A++ +e++++++
  KKY21572.1 468 GELLLDQQKYQEAIEKFETAIDME 491
                 778888999************987 PP

  == domain 6  score: 12.4 bits;  conditional E-value: 0.00024
       TPR_9   8 eedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapd 61 
                 ++d+ +a   ++  l+++P+    +   ++ll q+G +  Al+ +e++++l+  
  KKY21572.1 515 KQDFKEAEDLCQKALIIDPECDIAVATMAQLLLQQGKVTDALKYFERAAELSRT 568
                 78999********************************************99983 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1       0.3   1.6e+02       2      21 ..     189     208 ..     188     213 .. 0.89
   2 ?   -0.7   0.0       6.7   3.6e+03      17      31 ..     304     318 ..     295     325 .. 0.77
   3 ?    2.1   0.1      0.87   4.7e+02       3      33 ..     327     357 ..     325     360 .. 0.89
   4 !   16.3   0.3   2.4e-05     0.013       4      44 .]     362     402 ..     359     402 .. 0.94
   5 !   10.0   0.0    0.0025       1.4       2      34 ..     394     426 ..     393     436 .. 0.86
   6 ?    2.8   0.0      0.51   2.8e+02       7      44 .]     433     470 ..     429     470 .. 0.85
   7 ?    5.7   0.0     0.058        32       2      29 ..     462     489 ..     461     495 .. 0.87
   8 ?    7.5   0.1     0.015       8.2      13      44 .]     514     545 ..     506     545 .. 0.82
   9 !   14.3   0.2   9.9e-05     0.054       3      33 ..     538     568 ..     536     579 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.3
      TPR_14   2 eallalaeallalGdpdeAi 21 
                 +al ++a+a++ lG + eA+
  KKY21572.1 189 KALNRRAHAYEKLGMFSEAL 208
                 57889************996 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 6.7
      TPR_14  17 pdeAiallrralala 31 
                 ++eA + +++a++l+
  KKY21572.1 304 YEEATQFFEKAIELG 318
                 789999999999864 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.87
      TPR_14   3 allalaeallalGdpdeAiallrralalaPd 33 
                 a+ ++a + +  Gd+ +A+a l + +al+P+
  KKY21572.1 327 AYNMRATFRYLEGDTTQALADLTKSIALDPA 357
                 567889999999***************9996 PP

  == domain 4  score: 16.3 bits;  conditional E-value: 2.4e-05
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 + ++a+++l+lG+ ++A++ +++a a++ dd+++ ++ aql
  KKY21572.1 362 YIKRASIHLELGNREAAADDFEQATAQNKDDPDIFYHRAQL 402
                 5689*******************************999996 PP

  == domain 5  score: 10.0 bits;  conditional E-value: 0.0025
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPdd 34 
                 +  + +a++++ lG+++eA++ +++ ++l+ d+
  KKY21572.1 394 DIFYHRAQLHFILGEFAEAAKDYQKSIDLDRDF 426
                 67899********************99988765 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.51
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 l+   +  G  + ++a +rr+++ + + ++++ ++++l
  KKY21572.1 433 LGVTQYKMGSVASSMATFRRCIKNFDKVPDVYNYYGEL 470
                 6666677899999**************99999999875 PP

  == domain 7  score: 5.7 bits;  conditional E-value: 0.058
      TPR_14   2 eallalaeallalGdpdeAiallrrala 29 
                 +++  ++e+ll +++++eAi+ ++ a++
  KKY21572.1 462 DVYNYYGELLLDQQKYQEAIEKFETAID 489
                 567789******************9986 PP

  == domain 8  score: 7.5 bits;  conditional E-value: 0.015
      TPR_14  13 alGdpdeAiallrralalaPddaeawlllaql 44 
                   +d++eA++l+++al  +P+ + a   +aql
  KKY21572.1 514 WKQDFKEAEDLCQKALIIDPECDIAVATMAQL 545
                 4789****************998888888875 PP

  == domain 9  score: 14.3 bits;  conditional E-value: 9.9e-05
      TPR_14   3 allalaeallalGdpdeAiallrralalaPd 33 
                 a + +a++ll++G+  +A+++++ra +l  +
  KKY21572.1 538 AVATMAQLLLQQGKVTDALKYFERAAELSRT 568
                 56789********************987655 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1      0.13        72       3      75 ..     135     207 ..     131     209 .. 0.56
   2 ?    3.9   0.5      0.11        62       5      75 ..     304     378 ..     302     385 .. 0.73
   3 !   10.7   0.0   0.00087      0.47      16      72 ..     386     443 ..     381     453 .. 0.86
   4 !   10.5   0.1     0.001      0.55      29      80 ..     433     485 ..     429     487 .. 0.89
   5 !   14.7   0.2   4.9e-05     0.027      29      81 ..     507     561 ..     500     562 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.13
                 T-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHH CS
      ANAPC3   3 nnyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeA 75 
                 ++y+nAi l+ ++    + +p      A c+  +g++++ +e +  a   +++  +++   A+++ kL+ + eA
  KKY21572.1 135 KDYNNAIDLYGKAI-LCKPDPVYYSNRAACYNVLGEWEKVIEDTTAAvSMDPEYVKALNRRAHAYEKLGMFSEA 207
                 45666666666666.33333333333477777777777777766666555555555555555666666666665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHH.HHH--HHHHHHH...HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHH CS
      ANAPC3   5 yknAiflaerllaaetespedayll...AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeA 75 
                 y++A  ++e++ +     +  a+++   A   yl g+ ++A+  l k+  l++   ++ +  A   l+L++ e A
  KKY21572.1 304 YEEATQFFEKAIELGDLAEHEAFAYnmrATFRYLEGDTTQALADLTKSiALDPALTQSYIKRASIHLELGNREAA 378
                 7888889999998555555555555558*******************9666666656555556666777776665 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00087
                 H.HHH--HHHHHHH.HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-H CS
      ANAPC3  16 laaetespedayll.AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkky 72 
                   a+++++ d++++ A+ ++ +g++ +A + ++k+ +l+   + +++ ++ +++k++++
  KKY21572.1 386 T-AQNKDDPDIFYHrAQLHFILGEFAEAAKDYQKSiDLDRDFIFSHIQLGVTQYKMGSV 443
                 4.7788888999999********************999999999999999999999876 PP

  == domain 4  score: 10.5 bits;  conditional E-value: 0.001
                 HHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  29 lAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 l+ + y++g   + +  +r++ k  +k + +   +++ ll+++ky+eAi  +e
  KKY21572.1 433 LGVTQYKMGSVASSMATFRRCiKNFDKVPDVYNYYGELLLDQQKYQEAIEKFE 485
                 57778999999999*******999999999999***************98665 PP

  == domain 5  score: 14.7 bits;  conditional E-value: 4.9e-05
                 HHHHHHHTT-.HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  29 lAlclylngq.ykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 +Al+l++ +q +k+A +l++ka  ++++   +  ++Aq ll+++k+ +A++ +e+
  KKY21572.1 507 KALALFQWKQdFKEAEDLCQKAlIIDPECDIAVATMAQLLLQQGKVTDALKYFER 561
                 58999998888***********99999999999******************9987 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       5.6     3e+03       2      10 ..     161     169 ..     160     172 .. 0.86
   2 ?    1.7   0.0      0.48   2.6e+02      18      31 ..     304     317 ..     303     318 .. 0.92
   3 ?   -2.2   0.1       7.9   4.3e+03       5      30 ..     328     353 ..     325     354 .. 0.73
   4 ?    4.8   0.1     0.049        26       9      28 ..     366     385 ..     359     387 .. 0.87
   5 ?    5.5   0.1      0.03        16       9      30 ..     400     421 ..     398     424 .. 0.87
   6 !    7.8   0.1    0.0056       3.1       5      34 ..     464     493 ..     462     495 .. 0.90
   7 ?    4.9   0.0     0.045        24       9      31 ..     508     531 ..     504     531 .. 0.81
   8 !   12.9   0.1   0.00014     0.078       8      33 ..     542     567 ..     540     570 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 5.6
      TPR_10   2 AsslnNLan 10 
                 A+++n L+ 
  KKY21572.1 161 AACYNVLGE 169
                 99*****95 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.48
      TPR_10  18 ydeAealleealai 31 
                 y+eA +++e+a+++
  KKY21572.1 304 YEEATQFFEKAIEL 317
                 89*********985 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 7.9
      TPR_10   5 lnNLanalrqrgrydeAealleeala 30 
                 +n  a   +  g+ ++A+a+l +++a
  KKY21572.1 328 YNMRATFRYLEGDTTQALADLTKSIA 353
                 55555555666899999999999987 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.049
      TPR_10   9 analrqrgrydeAealleea 28 
                 a ++ ++g++++A +++e+a
  KKY21572.1 366 ASIHLELGNREAAADDFEQA 385
                 78999**************9 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.03
      TPR_10   9 analrqrgrydeAealleeala 30 
                 a +++ +g+++eA ++++++++
  KKY21572.1 400 AQLHFILGEFAEAAKDYQKSID 421
                 6678889************997 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.0056
      TPR_10   5 lnNLanalrqrgrydeAealleealairrr 34 
                 +n  + +l ++++y+eA + +e a+++ ++
  KKY21572.1 464 YNYYGELLLDQQKYQEAIEKFETAIDMEKQ 493
                 8999*******************9998776 PP

  == domain 7  score: 4.9 bits;  conditional E-value: 0.045
      TPR_10   9 anal.rqrgrydeAealleealai 31 
                 a al +  ++++eAe+l+++al i
  KKY21572.1 508 ALALfQWKQDFKEAEDLCQKALII 531
                 6666678899***********975 PP

  == domain 8  score: 12.9 bits;  conditional E-value: 0.00014
      TPR_10   8 LanalrqrgrydeAealleealairr 33 
                 +a +l q+g+ ++A++++e+a ++ r
  KKY21572.1 542 MAQLLLQQGKVTDALKYFERAAELSR 567
                 6899*****************99977 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.5      0.06        33     145     195 ..     348     393 ..     303     406 .. 0.68
   2 !   28.0   0.6   2.5e-09   1.3e-06      46     215 ..     433     590 ..     408     602 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.06
    TPR_MalT 145 lqeGielleqlepeaaldayvllarialaqGdleeAetllekaeelaresn 195
                 l ++i+l       a +++y+  a i+l  G+ e+A++ +e+a+++ + ++
  KKY21572.1 348 LTKSIAL-----DPALTQSYIKRASIHLELGNREAAADDFEQATAQNKDDP 393
                 4444433.....335588999999999999999999999999988776655 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 2.5e-09
    TPR_MalT  46 lGeasllqGdleaAlqalqeaeklarqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEw.ndLeeAeq 143
                 lG ++   G ++++ ++++  +k     d+++  ++ +   +e+l  q + +eA+e +e a+ +  e++ +++++  ++l+  a  l+ w  d++eAe+
  KKY21572.1 433 LGVTQYKMGSVASSMATFRRCIKNF---DKVPD-VYNY--YGELLLDQQKYQEAIEKFETAIDM--EKQTKPMCMNVLPLINKALALFQWkQDFKEAED 523
                 5666666666666555555555433...33332.2334..48*********************5..455556688889999999988888358****** PP

    TPR_MalT 144 hlqeGielleqlepeaaldayvllarialaqGdleeAetllekaeelaresnfhvdwlanaeevrvrlwlaq 215
                  +q+++ +  +   ++   a +++a++ l+qG++ +A++++e+a el r++   + +l+ ae++r +l + q
  KKY21572.1 524 LCQKALIIDPEC--DI---AVATMAQLLLQQGKVTDALKYFERAAELSRTEGEVINALSYAEATRTQLEVSQ 590
                 *****5554444..22...45789999**********************99988999999999987776655 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.048        26     143     179 ..     151     187 ..     139     201 .. 0.90
   2 !    7.1   0.2    0.0052       2.8     126     180 ..     304     359 ..     299     379 .. 0.86
   3 ?    4.9   0.0     0.023        12     139     177 ..     386     424 ..     379     427 .. 0.87
   4 !    9.4   1.1     0.001      0.56     111     258 ..     425     582 ..     412     585 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.048
      TPR_15 143 eqsaafllaraelyrqegqtdaAlrdyreAlalapds 179
                 + ++ +++ ra+ y   g++++ ++d   A++++p+ 
  KKY21572.1 151 KPDPVYYSNRAACYNVLGEWEKVIEDTTAAVSMDPEY 187
                 56899****************************9985 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0052
      TPR_15 126 ydriaellksleeeea.aeqsaafllaraelyrqegqtdaAlrdyreAlalapdss 180
                 y++  ++++++ e+ + ae +a+ + +ra +   eg+t +Al d+ + +al+p+ +
  KKY21572.1 304 YEEATQFFEKAIELGDlAEHEAFAYNMRATFRYLEGDTTQALADLTKSIALDPALT 359
                 566678999988877758899999****************************9844 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.023
      TPR_15 139 eeaaeqsaafllaraelyrqegqtdaAlrdyreAlalap 177
                 +++ ++++ +++ ra+l+   g+ ++A +dy++ ++l+ 
  KKY21572.1 386 TAQNKDDPDIFYHRAQLHFILGEFAEAAKDYQKSIDLDR 424
                 455679***************************999875 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.001
      TPR_15 111 rlLssalellerakdydriaellkslee.eeaaeqsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawka 208
                 ++  s ++l+  + ++  +a+ +++  +  +++ + + ++ +++el +++ + ++A++ ++ A++++ +++ +  + l l +    +a    +l +wk+
  KKY21572.1 425 DFIFSHIQLGVTQYKMGSVASSMATFRRcIKNFDKVPDVYNYYGELLLDQQKYQEAIEKFETAIDMEKQTKPMCMNVLPLIN----KAL---ALFQWKQ 516
                 5566778888888888889999999886466799999999999999999999999999999999999999999988886555....443...6889998 PP

      TPR_15 209 ra...........esdasLwgpla.aAlllLgrpk..kALeylrk..qakenrkdplwllaYADal 258
                 +              d++ + + a  A+llL++ k   AL+y+++   ++  + ++   l+YA+a 
  KKY21572.1 517 DFkeaedlcqkalIIDPECDIAVAtMAQLLLQQGKvtDALKYFERaaELSRTEGEVINALSYAEAT 582
                 886666776655533444444444146677766542279999999444556667788889999986 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.012       6.3      18      88 ..      25     100 ..      13     110 .. 0.82
   2 ?    0.3   0.0       1.4   7.7e+02      65      91 ..     331     357 ..     322     373 .. 0.78
   3 ?    1.2   0.1      0.77   4.2e+02      64      89 ..     364     389 ..     357     400 .. 0.63
   4 ?   -1.1   0.0         4   2.2e+03      65      87 ..     399     421 ..     396     430 .. 0.84
   5 ?    5.7   0.7     0.031        17      66     104 ..     543     583 ..     538     585 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.012
      HemY_N  18 vavlllvllfvllylllrllrlllrl....parvrrwrrrrrerkarealseGlialaeGdfarAekaa.akaakl 88 
                  av+ +++++v+++    ++  +  +    p+  r+  ++rr++k+++  ++G i+l  +++a++ k a ++a+++
  KKY21572.1  25 KAVVYTIAGAVVVVSGAGVVYYFSDSkppkPTEPRKSKKERRKEKKKAEEEKGGIKLKDEEAATSPKPAtVEAEDQ 100
                 57888888888888888888888888998899999***************************99998873445444 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.4
      HemY_N  65 eGlialaeGdfarAekaaakaaklsea 91 
                 ++   ++eGd  +A  +++k+ +l++a
  KKY21572.1 331 RATFRYLEGDTTQALADLTKSIALDPA 357
                 6777899***********999887766 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.77
      HemY_N  64 seGlialaeGdfarAekaaakaakls 89 
                 +++ i+l+ G+ ++A  ++ +a ++ 
  KKY21572.1 364 KRASIHLELGNREAAADDFEQATAQN 389
                 55666666666666666666665555 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 4
      HemY_N  65 eGlialaeGdfarAekaaakaak 87 
                 ++ +++  G+fa+A k+ +k+ +
  KKY21572.1 399 RAQLHFILGEFAEAAKDYQKSID 421
                 68899999********9998765 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.031
      HemY_N  66 GlialaeGdfarAekaaakaaklsea..pllayllaAqAaq 104
                 + + l++G   +A k + +aa+ls++  +++++l  A+A  
  KKY21572.1 543 AQLLLQQGKVTDALKYFERAAELSRTegEVINALSYAEATR 583
                 6677999*****************88899*********975 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       6.1   3.3e+03      14      27 ..     135     148 ..     124     148 .. 0.80
   2 ?   -0.0   0.1       3.3   1.8e+03       5      20 ..     193     208 ..     190     213 .. 0.85
   3 ?    1.1   0.0       1.5     8e+02       9      25 ..     334     350 ..     327     356 .. 0.74
   4 ?    3.1   0.1      0.33   1.8e+02       3      28 ..     362     387 ..     360     391 .. 0.85
   5 ?    1.3   0.0       1.2   6.7e+02       3      25 ..     396     418 ..     394     422 .. 0.76
   6 !    7.9   0.0    0.0098       5.3       5      30 ..     432     457 ..     429     459 .. 0.93
   7 ?    4.8   0.2     0.094        51       6      28 ..     467     489 ..     466     490 .. 0.86
   8 ?    6.0   0.5      0.04        22       6      27 ..     542     563 ..     540     565 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 6.1
                 HHHHHHHHHHHHHH CS
       TPR_6  14 gdtdkAlealerli 27 
                 +d+ +A++++ + i
  KKY21572.1 135 KDYNNAIDLYGKAI 148
                 5999*****99875 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 3.3
                 HHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAl 20 
                 ++a +y+klg  ++Al
  KKY21572.1 193 RRAHAYEKLGMFSEAL 208
                 68999***99*99997 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHHHH CS
       TPR_6   9 syrklgdtdkAlealer 25 
                  ++  gdt++Al+ l +
  KKY21572.1 334 FRYLEGDTTQALADLTK 350
                 556667*****998876 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.33
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlik 28 
                 + k+a  +++lg+ ++A + +e+   
  KKY21572.1 362 YIKRASIHLELGNREAAADDFEQATA 387
                 56889999**99*********99865 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealer 25 
                 +y++a++++ lg+ ++A + +++
  KKY21572.1 396 FYHRAQLHFILGEFAEAAKDYQK 418
                 67888888866699999999987 PP

  == domain 6  score: 7.9 bits;  conditional E-value: 0.0098
                 HHHHHHHHHHHHHHHHHHHHHHHHH- CS
       TPR_6   5 klalsyrklgdtdkAlealerlikeY 30 
                 +l+  ++k+g  + ++++++r+ik++
  KKY21572.1 432 QLGVTQYKMGSVASSMATFRRCIKNF 457
                 699**********************9 PP

  == domain 7  score: 4.8 bits;  conditional E-value: 0.094
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerlik 28 
                  +++++ ++++++A+e +e  i+
  KKY21572.1 467 YGELLLDQQKYQEAIEKFETAID 489
                 688889878**********9885 PP

  == domain 8  score: 6.0 bits;  conditional E-value: 0.04
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerli 27 
                 +a++++++g+ ++Al+++er  
  KKY21572.1 542 MAQLLLQQGKVTDALKYFERAA 563
                 79999999***********976 PP

>> MAS20  MAS20 protein import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   0.00051      0.28       3     106 ..      35     145 ..      32     155 .. 0.53
   2 ?   -2.1   0.8       6.9   3.7e+03     107     122 ..     240     255 ..     218     317 .. 0.65
   3 ?   -1.0   0.1       3.3   1.8e+03      64      84 ..     300     320 ..     259     332 .. 0.70
   4 ?   -1.1   0.0       3.5   1.9e+03      66     104 ..     418     456 ..     374     467 .. 0.70
   5 ?    6.0   0.0     0.022        12      82     111 ..     468     497 ..     465     503 .. 0.89
   6 ?    2.4   0.1      0.28   1.5e+02      81     115 ..     542     576 ..     538     582 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00051
       MAS20   3 vaaaaflgYcvYF.DrkRrsdpefkkklrerrkkqakaakeeeeaekaekkk.....kealeeakeelp.tdaeevekfFl.eevqlGEellaqgeeee 93 
                 v++++  g + YF D k  +  e +k+ +errk+++ka++e+   + +++ +     k a+ ea+++lp  ++++ve+f + ++++ + +l a g++  
  KKY21572.1  35 VVVVSGAGVVYYFsDSKPPKPTEPRKSKKERRKEKKKAEEEKGGIKLKDE-EaatspKPATVEAEDQLPeITESTVENFSTdDKLKFATKLKAAGNKAF 132
                 56677778888884555555555565555555555555444433333333.235678666666666688544455555543224555555555555555 PP

       MAS20  94 aaehlynAlkvcp 106
                 + +   nA+ +++
  KKY21572.1 133 GSKDYNNAIDLYG 145
                 5555555555554 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 6.9
       MAS20 107 qPqeLlqilqktlPee 122
                 + +++l+  qk+lP +
  KKY21572.1 240 KGKAILETKQKKLPSP 255
                 2233333333333333 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 3.3
       MAS20  64 lptdaeevekfFleevqlGEe 84 
                   +  ee  +fF + ++lG+ 
  KKY21572.1 300 TGEGYEEATQFFEKAIELGDL 320
                 335558899999999999975 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 3.5
       MAS20  66 tdaeevekfFleevqlGEellaqgeeeeaaehlynAlkv 104
                 ++ +    f ++++qlG +  + g++  ++  + + +k 
  KKY21572.1 418 KSIDLDRDFIFSHIQLGVTQYKMGSVASSMATFRRCIKN 456
                 444555678889999999999999999999999888775 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.022
       MAS20  82 GEellaqgeeeeaaehlynAlkvcpqPqeL 111
                 GE ll q++++ea+e++  A+ + +q + +
  KKY21572.1 468 GELLLDQQKYQEAIEKFETAIDMEKQTKPM 497
                 9********************999987766 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.28
       MAS20  81 lGEellaqgeeeeaaehlynAlkvcpqPqeLlqil 115
                 +++ ll+qg++ +a++ + +A  +  + +e+++ l
  KKY21572.1 542 MAQLLLQQGKVTDALKYFERAAELSRTEGEVINAL 576
                 67789999*******************99999987 PP

>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       3.8   2.1e+03      20      33 ..     134     147 ..     127     149 .. 0.87
   2 ?   -0.8   0.1         5   2.7e+03       1      11 [.     195     205 ..     195     212 .. 0.84
   3 ?    4.3   0.0      0.13        69      23      38 .]     304     319 ..     297     319 .. 0.91
   4 ?    7.0   0.0     0.018       9.9      26      36 ..     555     565 ..     549     566 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 3.8
        Sel1  20 pkDpekAiewyekA 33 
                  kD++ Ai +y kA
  KKY21572.1 134 SKDYNNAIDLYGKA 147
                 68*********999 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 5
        Sel1   1 aeAmyrLGmfy 11 
                 a+A+ +LGmf 
  KKY21572.1 195 AHAYEKLGMFS 205
                 68999***997 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.13
        Sel1  23 pekAiewyekAAeqGd 38 
                 +e+A +++ekA e+Gd
  KKY21572.1 304 YEEATQFFEKAIELGD 319
                 68999*********97 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.018
        Sel1  26 AiewyekAAeq 36 
                 A++++e+AAe+
  KKY21572.1 555 ALKYFERAAEL 565
                 9********97 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.14        73      18      31 ..     135     148 ..     133     150 .. 0.91
   2 ?    0.3   0.2       1.3   7.3e+02       9      31 ..     193     215 ..     189     243 .. 0.72
   3 ?    1.4   0.0      0.62   3.3e+02      20      33 ..     304     317 ..     298     327 .. 0.82
   4 ?    1.0   0.0      0.84   4.6e+02      18      33 ..     407     422 ..     405     422 .. 0.89
   5 !    7.2   0.1    0.0097       5.3      17      32 ..     474     489 ..     471     495 .. 0.77
   6 ?    4.1   0.0     0.093        50       5      33 ..     537     565 ..     537     568 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.14
         MIT  18 gnyeeAlelYkeal 31 
                 ++y  A++lY +a+
  KKY21572.1 135 KDYNNAIDLYGKAI 148
                 89*********998 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.3
         MIT   9 kkAveeDnagnyeeAlelYkeal 31 
                 ++A  +++ g ++eAl  Y+ ++
  KKY21572.1 193 RRAHAYEKLGMFSEALLDYTASC 215
                 6899999999******9999886 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.62
         MIT  20 yeeAlelYkealel 33 
                 yeeA + +++a+el
  KKY21572.1 304 YEEATQFFEKAIEL 317
                 88999999999886 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.84
         MIT  18 gnyeeAlelYkealel 33 
                 g+++eA + Y+++++l
  KKY21572.1 407 GEFAEAAKDYQKSIDL 422
                 7899*********996 PP

  == domain 5  score: 7.2 bits;  conditional E-value: 0.0097
         MIT  17 agnyeeAlelYkeale 32 
                 +++y+eA+e++++a++
  KKY21572.1 474 QQKYQEAIEKFETAID 489
                 5788888888888887 PP

  == domain 6  score: 4.1 bits;  conditional E-value: 0.093
         MIT   5 lelvkkAveeDnagnyeeAlelYkealel 33 
                 ++++++A  + ++g+  +Al++++ a el
  KKY21572.1 537 IAVATMAQLLLQQGKVTDALKYFERAAEL 565
                 578999*******************9986 PP

>> DUF3856  Domain of Unknown Function (DUF3856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.15        81      99     126 ..     187     214 ..     159     227 .. 0.89
   2 ?    0.7   0.3       0.9   4.9e+02      22      51 ..     301     329 ..     293     348 .. 0.81
   3 ?    1.8   0.0      0.43   2.4e+02      22      52 ..     406     432 ..     395     476 .. 0.59
   4 ?    1.4   0.1      0.54     3e+02      17      41 ..     469     493 ..     462     498 .. 0.80
   5 ?    6.8   0.0     0.012       6.7      78     101 ..     552     575 ..     537     598 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
     DUF3856  99 WiaavfsravaleelGrkdealkafrma 126
                 +++a+ +ra+a+e+lG  +eal  +  +
  KKY21572.1 187 YVKALNRRAHAYEKLGMFSEALLDYTAS 214
                 6889999**************9988755 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.9
                 HT-HHHHHHHHHHHHHHHTTS-TTS---HH CS
     DUF3856  22 egayeeaaasyrkalevsrtipaeeafdhe 51 
                  + yeea++ ++ka+e+   +++ eaf ++
  KKY21572.1 301 GEGYEEATQFFEKAIELG-DLAEHEAFAYN 329
                 567999999999999997.58889999987 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.43
                 HT-HHHHHHHHHHHHHHHTTS-TTS---HHH CS
     DUF3856  22 egayeeaaasyrkalevsrtipaeeafdheG 52 
                  g+++eaa++y+k++++ r       f h  
  KKY21572.1 406 LGEFAEAAKDYQKSIDLDRDF----IFSHIQ 432
                 589999999999999988754....455544 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.54
                 HHHHHHT-HHHHHHHHHHHHHHHTT CS
     DUF3856  17 ekqleegayeeaaasyrkalevsrt 41 
                 e  l +++y+ea ++++ a+++ + 
  KKY21572.1 469 ELLLDQQKYQEAIEKFETAIDMEKQ 493
                 5567888999999999999998764 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.012
                 HHHHHHHHHHH--TTSTHHHHHHH CS
     DUF3856  78 adkalryfnrrGeleqdeGklWia 101
                 +  al+yf+r  el + eG+   a
  KKY21572.1 552 VTDALKYFERAAELSRTEGEVINA 575
                 567999999999999999986544 PP

>> HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.27   1.5e+02      50      93 ..     466     510 ..     459     516 .. 0.74
   2 ?   10.6   0.2    0.0006      0.33      21      80 ..     512     572 ..     499     584 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.27
  HrpB1_HrpK  50 legvlliergrweeAlrlLreve.aeasgtpyakaLlAlcLaalr 93 
                 + g ll+ +++++eA+  +++    e++  p++   l l  +al 
  KKY21572.1 466 YYGELLLDQQKYQEAIEKFETAIdMEKQTKPMCMNVLPLINKALA 510
                 5688999************99773677788899887766655555 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0006
  HrpB1_HrpK  21 alasedtedaellLdalrvLrPevaeldllegvlliergrweeAlrlLreve.aeasgtpy 80 
                 +  ++d+++ae+l +   ++ Pe   + +  ++ll+++g++++Al++++     +++++++
  KKY21572.1 512 FQWKQDFKEAEDLCQKALIIDPECDIAVATMAQLLLQQGKVTDALKYFERAAeLSRTEGEV 572
                 3367899*****************************************9876244444444 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.2      0.01       5.6      74     120 ..     166     212 ..     156     214 .. 0.91
   2 ?    3.8   0.5      0.13        70      53     124 ..     316     387 ..     300     394 .. 0.78
   3 ?    1.8   0.2      0.54   2.9e+02      63     120 ..     360     417 ..     342     426 .. 0.70
   4 ?   -1.8   0.0         7   3.8e+03      68     122 ..     399     453 ..     389     457 .. 0.69
   5 ?    4.7   0.0     0.069        37      81     129 ..     521     569 ..     501     577 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.01
                 HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHH CS
        BTAD  74 rlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYe 120
                  lG++e+++++ +a+v+++P   ++      A+ ++G  +eAL  Y 
  KKY21572.1 166 VLGEWEKVIEDTTAAVSMDPEYVKALNRRAHAYEKLGMFSEALLDYT 212
                 69*****************************************9885 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
        BTAD  53 ererleelrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerlrr 124
                 e+  l e    a+  +a  +   G+  +ala+l++ +a++P   +++ +       +G++++A   +e++ +
  KKY21572.1 316 ELGDLAEHEAFAYNMRATFRYLEGDTTQALADLTKSIALDPALTQSYIKRASIHLELGNREAAADDFEQATA 387
                 566678888888999999999999999999999999999999888888888888888888888877777655 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.54
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHH CS
        BTAD  63 ealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYe 120
                 + + ++a  +l+lG +e+a+++ e+++a++  + +   +  +  + +G+ aeA + Y+
  KKY21572.1 360 QSYIKRASIHLELGNREAAADDFEQATAQNKDDPDIFYHRAQLHFILGEFAEAAKDYQ 417
                 5566788888899999999888888888776665555555555555555555555555 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 7
                 HHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
        BTAD  68 laeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerl 122
                 +a++++ lG+ +ea++++++ ++++     +h ql    +++G  a  +++++r+
  KKY21572.1 399 RAQLHFILGEFAEAAKDYQKSIDLDRDFIFSHIQLGVTQYKMGSVASSMATFRRC 453
                 6667777777777777777777666555555666666777777777777777776 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.069
                 HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH CS
        BTAD  81 alaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerlrrlLaee 129
                 a +  ++++  +P  + +++ + + l ++G+  +AL+++er+ +l ++e
  KKY21572.1 521 AEDLCQKALIIDPECDIAVATMAQLLLQQGKVTDALKYFERAAELSRTE 569
                 444456666778999999999999999***************9998887 PP

>> DUF3808  Protein of unknown function (DUF3808)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0042       2.3     314     404 ..     177     268 ..     171     281 .. 0.72
   2 ?   -0.1   0.1      0.53   2.9e+02     278     336 ..     470     526 ..     464     530 .. 0.69
   3 ?    4.6   0.1      0.02        11     249     316 ..     516     583 ..     506     601 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0042
     DUF3808 314 laltlvylheykeaaes.fleLlklskwSkalYtYlaaacllelgreekkaeakekaeelfkevpkllqkkagkslplekFilrKverfkar 404
                 ++ ++ +  ey +a++  +    kl  +S al  Y a +++  +++++++++ ++ ++++ ++  k   + ++k+lp   F+    + f++r
  KKY21572.1 177 TTAAVSMDPEYVKALNRrAHAYEKLGMFSEALLDYTASCIIDGFKNQQSTESVERLLKKVAEKKGKAILETKQKKLPSPTFVTNYLQSFRNR 268
                 555666677888888752677789999********99998888887755555545555555555555555677********99999999887 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.53
     DUF3808 278 ieslkgnldeAlelleeiieesqselkqvkhlclfel..altlvylheykeaaesfleLlk 336
                 ++  +++ +eA+e +e++i    +  kq k +c+  l     ++ l ++k+ ++++++L++
  KKY21572.1 470 LLLDQQKYQEAIEKFETAI----DMEKQTKPMCMNVLplINKALALFQWKQDFKEAEDLCQ 526
                 5666889999999999988....45566666665444004445666788888888888876 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.02
     DUF3808 249 apleeleelLlksrkrfPksalwllfearieslkgnldeAlelleeiieesqselkqvkhlclfelal 316
                  + +e+e+l +k++   P++ + +   a+++  +g++++Al+++e + e s+ e + +++l + e + 
  KKY21572.1 516 QDFKEAEDLCQKALIIDPECDIAVATMAQLLLQQGKVTDALKYFERAAELSRTEGEVINALSYAEATR 583
                 567888899999999999*****************************998999999999998888664 PP

>> PknG_TPR  Protein kinase G tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00019       0.1      99     153 ..     364     418 ..     330     422 .. 0.87
   2 ?   -0.8   0.0       0.9   4.9e+02     133     156 ..     466     489 ..     436     569 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
                 HHHHHHHHCT-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHT-HHHHHHHHHH CS
    PknG_TPR  99 aevrahldlGdveearelLdeleeeveedWrldWyrglaeLlegdyeeAaaeFde 153
                 + + +hl+lG+ e+a++ +++ ++++++d  + ++r++ + + g+++eAa+++++
  KKY21572.1 364 KRASIHLELGNREAAADDFEQATAQNKDDPDIFYHRAQLHFILGEFAEAAKDYQK 418
                 55678*********************************************99976 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.9
                 HHHHHHHHHT-HHHHHHHHHHHHH CS
    PknG_TPR 133 yrglaeLlegdyeeAaaeFdevla 156
                 y g   L +++y+eA+++F++ ++
  KKY21572.1 466 YYGELLLDQQKYQEAIEKFETAID 489
                 666666777788888888876554 PP

>> TAF1_subA  TAF RNA Polymerase I subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1    0.0002      0.11     154     220 ..     518     584 ..     507     600 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0002
   TAF1_subA 154 ykaavkllrlalistPgvwdafllpyvqlLelggkedeAlevlkec.aydkklPsrlnahllleqflk 220
                  k+a+ l++ ali  P   d+++    qlL+  gk+ +Al+  +   +++++  + +na  + e  ++
  KKY21572.1 518 FKEAEDLCQKALIIDPEC-DIAVATMAQLLLQQGKVTDALKYFERAaELSRTEGEVINALSYAEATRT 584
                 467788888*********.************************5555999999999999888555444 PP

>> preATP-grasp_3  pre ATP-grasp 3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       2.1   1.1e+03      22      44 ..     438     460 ..     425     460 .. 0.79
   2 ?    9.8   0.2    0.0018      0.96      30      67 ..     514     551 ..     509     553 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 2.1
  preATP-grasp_3  22 lvvdseedvdetfrrlaaeaDaV 44 
                     + + s  +  +tfrr++++ D V
      KKY21572.1 438 YKMGSVASSMATFRRCIKNFDKV 460
                     55666777889********9966 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0018
  preATP-grasp_3  30 vdetfrrlaaeaDaVlvIAPEtdgiLarltrlveaagk 67 
                     +++ f+++ + +   l+I PE+d   a++++l+ ++gk
      KKY21572.1 514 WKQDFKEAEDLCQKALIIDPECDIAVATMAQLLLQQGK 551
                     678899999**************************998 PP

>> DUF5539  Family of unknown function (DUF5539)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00016     0.085      52     118 ..      17     103 ..       8     112 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00016
     DUF5539  52 fgtwsspdedrvw....................rkpvrgtgnrdsgtrrrlqdatkqdprpgndvasaetagppspagiraqdrapr 118
                 ++tw+s ++  v+                     kp + t  r s   rr++    ++ + g  +   e+a  p pa + a+d+ p 
  KKY21572.1  17 ITTWASEHKAVVYtiagavvvvsgagvvyyfsdSKPPKPTEPRKSKKERRKEKKKAEEEKGGIKLKDEEAATSPKPATVEAEDQLPE 103
                 5799999999999999999999999999999999*******************999***************************9985 PP

>> SHNi-TPR  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       7.1   3.9e+03      22      31 ..     135     144 ..     134     146 .. 0.86
   2 ?   -1.8   0.1       4.1   2.2e+03       2       9 ..     162     169 ..     161     169 .. 0.87
   3 ?   -0.7   0.0       1.8     1e+03      17      27 ..     204     214 ..     203     214 .. 0.93
   4 ?    3.5   0.2     0.088        48      18      30 ..     342     354 ..     342     354 .. 0.92
   5 ?    8.3   0.1    0.0029       1.5      17      30 ..     409     422 ..     407     424 .. 0.92
   6 ?    6.8   0.0    0.0086       4.6       2      36 ..     462     496 ..     461     497 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 7.1
    SHNi-TPR  22 eDlrkaLeLr 31 
                 +D++ a++L+
  KKY21572.1 135 KDYNNAIDLY 144
                 8******997 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 4.1
    SHNi-TPR   2 dvydlLGE 9  
                  +y+ LGE
  KKY21572.1 162 ACYNVLGE 169
                 6******9 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.8
    SHNi-TPR  17 FpqAveDlrka 27 
                 F++A+ D++++
  KKY21572.1 204 FSEALLDYTAS 214
                 99******997 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.088
    SHNi-TPR  18 pqAveDlrkaLeL 30 
                 +qA+ Dl+k+++L
  KKY21572.1 342 TQALADLTKSIAL 354
                 6*********987 PP

  == domain 5  score: 8.3 bits;  conditional E-value: 0.0029
    SHNi-TPR  17 FpqAveDlrkaLeL 30 
                 F +A++D++k+++L
  KKY21572.1 409 FAEAAKDYQKSIDL 422
                 89*********998 PP

  == domain 6  score: 6.8 bits;  conditional E-value: 0.0086
    SHNi-TPR   2 dvydlLGEislEnenFpqAveDlrkaLeLreqllp 36 
                 dvy+  GE+ l + ++ +A+e +++a++   q++p
  KKY21572.1 462 DVYNYYGELLLDQQKYQEAIEKFETAIDMEKQTKP 496
                 999999********************998777776 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       6.5   3.5e+03       3      13 ..     137     147 ..     136     147 .. 0.89
   2 ?    1.6   0.0      0.74     4e+02       8      20 ..     196     208 ..     194     209 .. 0.92
   3 ?   -0.5   0.0       3.5   1.9e+03       2      27 ..     212     237 ..     211     240 .. 0.83
   4 ?   -1.1   0.0       5.5     3e+03      16      30 ..     304     318 ..     304     319 .. 0.81
   5 ?    4.0   0.0      0.13        72       5      25 ..     541     561 ..     539     565 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 6.5
         PPR   3 ynslIsgyckn 13 
                 yn  I+ y+k+
  KKY21572.1 137 YNNAIDLYGKA 147
                 9999****995 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.74
         PPR   8 sgycknGkleeAl 20 
                 ++y k G+++eAl
  KKY21572.1 196 HAYEKLGMFSEAL 208
                 69**********7 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 3.5
         PPR   2 tynslIsgycknGkleeAlelfkeMk 27 
                 t +++I+g+      e +++l+k+  
  KKY21572.1 212 TASCIIDGFKNQQSTESVERLLKKVA 237
                 66899****99999999999999865 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 5.5
         PPR  16 leeAlelfkeMkekG 30 
                 +eeA ++f++ +e G
  KKY21572.1 304 YEEATQFFEKAIELG 318
                 689999999988776 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.13
         PPR   5 slIsgycknGkleeAlelfke 25 
                 ++ + + + Gk+ +Al++f++
  KKY21572.1 541 TMAQLLLQQGKVTDALKYFER 561
                 67788999***********97 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       8.2   4.5e+03      32      67 ..     261     296 ..     259     308 .. 0.83
   2 ?    1.7   0.1      0.61   3.3e+02       5      43 ..     342     380 ..     338     382 .. 0.91
   3 ?    7.7   0.9    0.0082       4.5       7      52 ..     378     423 ..     374     428 .. 0.84
   4 ?   -0.4   0.0       2.8   1.5e+03      29      49 ..     468     488 ..     444     495 .. 0.79
   5 ?    1.9   0.1      0.51   2.8e+02      23      43 ..     537     557 ..     516     569 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 8.2
      TPR_20  32 llaagryeeAleqLleilkrdrkweddaarkqllki 67 
                 +l+  r++ A e L e ++ d +  +++ +k ++ +
  KKY21572.1 261 YLQSFRNRPAPEGLDESVQLDENTGKGQLQKGFVSM 296
                 677778889999999999999999999999988765 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.61
      TPR_20   5 apelaeleaalaanpddldarldlAlallaagryeeAle 43 
                 ++ la+l + +a +p+  +  ++ A   l+ g++e+A++
  KKY21572.1 342 TQALADLTKSIALDPALTQSYIKRASIHLELGNREAAAD 380
                 678999*******************************98 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0082
      TPR_20   7 elaeleaalaanpddldarldlAlallaagryeeAleqLleilkrd 52 
                   +++e+a a+n+dd d+ +  A++ +  g+ +eA++   + +  d
  KKY21572.1 378 AADDFEQATAQNKDDPDIFYHRAQLHFILGEFAEAAKDYQKSIDLD 423
                 56889******************************98766655555 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 2.8
      TPR_20  29 AlallaagryeeAleqLleil 49 
                  ++ll +++y+eA+e++ + +
  KKY21572.1 468 GELLLDQQKYQEAIEKFETAI 488
                 6789999*******9876655 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.51
      TPR_20  23 darldlAlallaagryeeAle 43 
                  a   +A++ll++g++ +Al+
  KKY21572.1 537 IAVATMAQLLLQQGKVTDALK 557
                 566679*************97 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8  10.3         4   2.2e+03     408     485 ..      56     128 ..      48     150 .. 0.51
   2 ?   13.8   2.9   3.7e-05      0.02      24     259 ..     164     392 ..     157     415 .. 0.68
   3 ?   -0.4   0.0      0.75   4.1e+02      40      77 ..     395     432 ..     384     463 .. 0.68
   4 ?    2.2   0.3      0.12        67     158     255 ..     467     565 ..     442     577 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH--.......-------------S-SSSTTTT-S-HHHHHHHHHTTTGGGT CS
       NARP1 408 aerkklrkkakkaekkaekeeaekaekekekkaaekkakkedeeakkededplgekLvkteepLeeAlkflkpLlkla 485
                 +e +k +k  +k++kkae+e+   + k +e   a+++ k +  ea+ + ++ + ++ ++     ++ lkf ++L++  
  KKY21572.1  56 TEPRKSKKERRKEKKKAEEEKGGIKLKDEE---AATSPKPATVEAEDQLPEITESTVENF--STDDKLKFATKLKAAG 128
                 455555555555555555555543333333...222223322233222233333333222..2456666666666655 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3.7e-05
                 HHHHHHHGGG---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-CHHHHHHHHHT...SSS-HHHHHHHHHHTTTS-TT-SHHHHTHHHH--HHH CS
       NARP1  24 lehLeekekqivDklavketkaelllkLgrkeeAeatyeaLlernpenskYyeglekak.klskedeeallalydelaekyprsdaprRlpLdfleGee 121
                 ++ L e ek i D+ a   +  e++ +L+r+++A   ye+L        +Y  + +    k +++++e+++ l++++aek  ++   ++   + l    
  KKY21572.1 164 YNVLGEWEKVIEDTTAAVSMDPEYVKALNRRAHA---YEKLGMFSEALLDYTASCIIDGfK-NQQSTESVERLLKKVAEKKGKAILETK--QKKLPSP- 255
                 5667777888888888888888888888887776...444433333333444333322213.333466667777777777666554332..2333333. PP

                 HHHHHHHHHHHHHHCT-TTHHHHHGGGGGGSCHHHHHHHHHHHHHT....TTTTSSSSTTGG.GSS----SSHHHHHHHHHHHHHHHHT-SHHHHHHHH CS
       NARP1 122 FkelvdkYlrkaLrkgvPslfanlksLYedkeKvkileelvegyvk....slktsgklsesdnedsekepesallwvlyflAqhydklgsrekAleyid 216
                   + v +Yl+   ++  P    +  +L e++ K ++ +  v+   +      ++++ ++++  e      ++a  +++++ A +    g++++Al  + 
  KKY21572.1 256 --TFVTNYLQSFRNRPAPEGLDESVQLDENTGKGQLQKGFVSMKSRtgegYEEATQFFEKAI-ELGDLAEHEA--FAYNMRATFRYLEGDTTQALADLT 349
                 ..446788888888888888888888888888888877777655553332233333444333.4444444444..799999999888999********* PP

                 HHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCTTT- CS
       NARP1 217 kaiehtptlvelyltKarilkhaGdlkkAaevmeearklDlaD 259
                 k i+ +p l++ y+ +a i+   G+ ++Aa+  e+a +  + D
  KKY21572.1 350 KSIALDPALTQSYIKRASIHLELGNREAAADDFEQATAQNKDD 392
                 *******************************999986655544 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.75
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-CHHHHH CS
       NARP1  40 vketkaelllkLgrkeeAeatyeaLlernpenskYyeg 77 
                 +   +a+l + Lg+++eA++ y++ ++   +    + +
  KKY21572.1 395 IFYHRAQLHFILGEFAEAAKDYQKSIDLDRDFIFSHIQ 432
                 55578999999999999999999888776665555444 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.12
                 HHHHHHHHHTTTTTSSSSTTGG.GSS----SSHHHHHHHHHHHH...HHHHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       NARP1 158 leelvegyvkslktsgklsesdnedsekepesallwvlyflAqh...ydklgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevmeear 253
                   el+++ +k +++ +k++++ + +++++++ + + vl ++ +    ++  ++ ++A ++ +ka+  +p++     t a++l ++G +++A +  e+a 
  KKY21572.1 467 YGELLLDQQKYQEAIEKFETAID-MEKQTKPMC-MNVLPLINKAlalFQWKQDFKEAEDLCQKALIIDPECDIAVATMAQLLLQQGKVTDALKYFERAA 563
                 45667777777777777776653.223333333.44444444330003445566689999999999999988888889999999999999999988888 PP

                 HC CS
       NARP1 254 kl 255
                 +l
  KKY21572.1 564 EL 565
                 77 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       7.5   4.1e+03       2      18 ..     155     171 ..     154     172 .. 0.86
   2 ?   -0.8   0.1       6.5   3.5e+03       5      22 ..     329     346 ..     325     346 .. 0.80
   3 ?    2.6   0.1      0.52   2.8e+02       8      21 ..     366     379 ..     360     388 .. 0.66
   4 ?    4.6   0.1      0.12        65       6      21 ..     398     413 ..     396     413 .. 0.91
   5 ?    1.8   0.1      0.98   5.3e+02       6      20 ..     541     555 ..     538     556 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 7.5
       TPR_4   2 rallaLArallalGdld 18 
                 + ++++A  +  lG+++
  KKY21572.1 155 VYYSNRAACYNVLGEWE 171
                 67899*********987 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 6.5
       TPR_4   5 laLArallalGdldeAra 22 
                  ++A   ++ Gd  +A+a
  KKY21572.1 329 NMRATFRYLEGDTTQALA 346
                 5778888999******97 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.52
       TPR_4   8 ArallalGdldeAr 21 
                 A  +l+lG+ ++A+
  KKY21572.1 366 ASIHLELGNREAAA 379
                 55667777777765 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.12
       TPR_4   6 aLArallalGdldeAr 21 
                  +A++++ lG+++eA+
  KKY21572.1 398 HRAQLHFILGEFAEAA 413
                 79*************6 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.98
       TPR_4   6 aLArallalGdldeA 20 
                  +A++ll++G   +A
  KKY21572.1 541 TMAQLLLQQGKVTDA 555
                 68********98877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1402  (0.0781973); expected 358.6 (0.02)
Passed bias filter:                      770  (0.0429472); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.74u 0.25s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 3985.67
//
Query:       KKY21573.1  [L=680]
Description: putative fha domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-14   54.3   0.0    2.8e-14   53.2   0.0    1.7  1  FHA           FHA domain
     0.0056   17.0   0.0       0.03   14.6   0.0    2.1  2  Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic d


Domain annotation for each model (and alignments):
>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   3.1e-18   2.8e-14       2      69 .]      37     114 ..      36     114 .. 0.87

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 3.1e-18
                 EEESS..........TTSSEETTSTTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEET CS
         FHA   2 tiGRs..........sdcdivlddpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigkgepveLksgdvielG 69 
                 +iGRs          +  +  +d++++Sr Ha+ik  ++ + v++eD gS +GtfvN++++g+ e+ +L++gd++++G
  KKY21573.1  37 SIGRSsrsedgklfpRADNGWFDSRVVSREHAVIKAFPDMNAVFIEDAGSMHGTFVNEHKVGPREKEMLANGDQLRFG 114
                 68999866666666444555577899********9999989************************************8 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.3e-06      0.03      34      83 ..      61     115 ..      58     117 .. 0.85
   2 ?   -2.0   0.0      0.52   4.6e+03      57      79 ..     267     290 ..     261     294 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.3e-06
                   TTS-TT-EEEEE..ETTEEEEEE-CESS--EETTEE-S..ECC.--TTSEEEETT CS
  Yop-YscD_cpl  34 kevsrkhlkLev..eeesvrledlgsrngllvngerve..ele.lrpgdvlelGt 83 
                   + vsr+h+++++  + + v +ed gs  g++vn+ +v   e+e l+ gd+l  G+
    KKY21573.1  61 RVVSREHAVIKAfpDMNAVFIEDAGSMHGTFVNEHKVGprEKEmLANGDQLRFGA 115
                   569*******97446899*******************9643338******99985 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.52
                   ESS--EETTEE-S.ECC--TTSEE CS
  Yop-YscD_cpl  57 srngllvngerve.elelrpgdvl 79 
                   s +  +vnge  + ++++ p++v+
    KKY21573.1 267 SPEAPFVNGESKQeNAQIDPHTVI 290
                   556667777666634446666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.49
# Mc/sec: 4143.74
//
Query:       KKY21574.1  [L=939]
Description: putative formate-tetrahydrofolate ligase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-252  839.3   0.2   1.6e-252  838.7   0.0    1.3  2  FTHFS            Formate--tetrahydrofolate ligase
    1.3e-67  226.1   1.3    1.3e-67  226.1   1.3    2.2  2  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas
    8.3e-39  132.5   0.7    1.9e-38  131.3   0.7    1.7  1  THF_DHG_CYH      Tetrahydrofolate dehydrogenase/cyclohydrolas
     0.0039   16.2   0.1     0.0075   15.2   0.1    1.4  1  OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin famil
  ------ inclusion threshold ------
      0.031   13.8   0.3      0.099   12.2   0.0    1.9  2  GTP_EFTU         Elongation factor Tu GTP binding domain
      0.065   12.9   0.0       0.11   12.1   0.0    1.3  1  Helicase_C_4     C-terminal domain on Strawberry notch homolo
      0.076   12.6   1.0       0.22   11.1   0.1    2.2  3  Peripla_BP_4     Periplasmic binding protein domain


Domain annotation for each model (and alignments):
>> FTHFS  Formate--tetrahydrofolate ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1       1.3   3.3e+03      60      82 ..     263     285 ..     252     289 .. 0.77
   2 !  838.7   0.0  6.2e-256  1.6e-252       2     554 .]     313     939 .]     312     939 .] 0.98

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 1.3
                 EESS--TT--SHHHHHHHHHHHH CS
       FTHFS  60 taitPtplGeGKttttigLaqal 82 
                 + itP p G G  t+++ L + +
  KKY21574.1 263 SHITPVPGGVGPMTVAMLLQNVV 285
                 469*********99999887655 PP

  == domain 2  score: 838.7 bits;  conditional E-value: 6.2e-256
                 -HHHHHHCS----HHHHHHCTT--CCCEEEBSTTEEEE-CHHCCTCTTTS-.-EEEEEEESS--TT--SHHHHHHHHHHHHH.HTT--EEEEE----SH CS
       FTHFS   2 sdieiaqeaklkpieeiaeklglkeeelelyGkykakvslkvlerllkekkkgklilvtaitPtplGeGKttttigLaqaln.klgkkavaalRepslG 99 
                 sdi i++++++k i+++a+++g++ +e+e+yG ykakv+l++l+rl  ++k+gk+ilv++itPtplGeGK+ttt+gL+qa++ +l++ ++a++R+ps+G
  KKY21574.1 313 SDIAISRAQRPKFITQVAQEVGIAGHEFEPYGAYKAKVDLSLLNRL-GHRKNGKYILVSGITPTPLGEGKSTTTMGLTQAIGaHLNRITFANVRQPSMG 410
                 8******************************************976.99********************************99**************** PP

                 HHHCST--SCEETTEEEESHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTTT............................................. CS
       FTHFS 100 PvfgiKGgAaGGGysqvvPmedinLhltGDihaitaannllaalidnrifhene............................................. 153
                 P+fgiKGgAaGGGysqv+Pm+++nLhltGDihai aannllaa+i++r+fhe++                                             
  KKY21574.1 411 PTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAIGAANNLLAAAIETRMFHEKTqkdgplyrrlvptkkgkrefspimfrrlkklgitktnpdelteee 509
                 *************************************************************************************************** PP

                 ......T-EECCCE---EEESS--GGGSSEEES-SSTTS---EEE-EEEGGGSHHHHHHHH-SSHHHHHHHHHC-EEEEETTS-EEECCCCT-HHHHHH CS
       FTHFS 154 ......ldidpkkitwkrvlDvndraLRkivvglggkekgvpretgfditvasEimailaLakdledlkerlgrivvaytkdgepvtaedlkvagalav 246
                       ldidp++itw+rvlDvndr+LR i++g++++ekg++ret fditvasE+mailaL++dl+d++erlgrivva++++g+pvta+d++v gal++
  KKY21574.1 510 irrfarLDIDPETITWRRVLDVNDRHLRGITIGQAPTEKGHTRETAFDITVASECMAILALSNDLADMRERLGRIVVATSRSGDPVTADDIGVGGALTA 608
                 *************************************************************************************************** PP

                 HTTTTTS-EEEEETT--EEEE-----SSSS--B--HHHHHHHHHH............-SEEEEEBSSSTTTHHHHHHHTHHHHHT---SEEEEEEEHHH CS
       FTHFS 247 llkdaikPnlvqtlegtpalvHggPFAniahGcnsviatklalkl............adyvvtEaGFgadlgaekfldikcrasglkpdavvlvatvra 333
                 l+kdaikPnl+q+legtp++vH+gPFAni++G++sv+a+klalkl            a++vvtEaGF++++g e+f++ikcr+sgl pd+vv+vatvra
  KKY21574.1 609 LMKDAIKPNLMQSLEGTPVFVHAGPFANISIGNSSVLADKLALKLagtepdedheakAGFVVTEAGFDFTMGGERFFNIKCRTSGLVPDTVVIVATVRA 707
                 *************************************************************************************************** PP

                 HHHHTT......--C...CCTTS--HHHHHHHHHHHHHHHHHHCTTT--EEEEEE--TT--HHHHHHHHHHH.HCTTSEEEEE-HHHHGGGGGHHHHHH CS
       FTHFS 334 Lklhgg......vek...eelkeenlealekGlanlekhienvkkfgvpvvvainkfktDteaelelvkela.eakavevalsevwakGgeGalelaea 422
                 Lk hgg        +   e++++en+e+++kG+ nl+khi+n+k++g+pvvvainkf+tDteae+++++e++ +a+a +++ s++wa+Gg Ga+elaea
  KKY21574.1 708 LKNHGGgpdvtpG-TalpEAYRTENVELVRKGCVNLRKHIQNAKSYGIPVVVAINKFETDTEAEVNVIQEEStAAGAEAAIPSDHWARGGLGAVELAEA 805
                 ******8887641.25679****************************************************96677777888***************** PP

                 HHHHCC-.-.---SS-TTS-HHHHHHHHHHHTT--SEEEE-HHHHHHHHHHHHTTCTTS-EEEE--SSSSSSSTT--SS--S-EEEEEEEEEETTTTEE CS
       FTHFS 423 vvealee.kefkflYdlelsieekietiakeiYgadgvelseeakkklkklekqgldklpvciaKtqySlsddpklkgapegftltvrevrlsaGagfi 520
                 vv+a ++ k+fk+lY+le s++e+ie+i k +Ygad+ve+se a+kk++++++qg+++lp+ciaKtqySls+dp+lkgap+gft+++r+vrl+ Gag++
  KKY21574.1 806 VVAASQKpKDFKLLYELEGSVQERIEKIGKLMYGADKVEFSELAQKKVDTYTRQGFGNLPICIAKTQYSLSHDPALKGAPTGFTVPIRDVRLADGAGYL 904
                 ******7799***************************************************************************************** PP

                 EEESST--SS----SS-GGGC-EE-TT.SEEES-- CS
       FTHFS 521 valageimtmPGlpkkpaaekidvdee.gkieGlf 554
                 +ala++i+t+PGlp+ p + ++dvd+e g+i Glf
  KKY21574.1 905 YALAADIQTIPGLPTAPGYLNVDVDTEtGEIDGLF 939
                 **************************99*****98 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.1   1.3   5.2e-71   1.3e-67       4     157 ..     128     289 ..     126     292 .. 0.97
   2 ?   -0.6   0.1      0.28   7.3e+02     130     154 ..     369     393 ..     364     398 .. 0.85

  Alignments for each domain:
  == domain 1  score: 226.1 bits;  conditional E-value: 5.2e-71
                    HHHHHHTT..--SS--HHHHHHHHHHHHCT---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHCCSSEEEE-SS-TT-B-GGG CS
  THF_DHG_CYH_C   4 nlgrlvkg..eeallpctpkgvvellketgielegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeitreadivvvavGkpelikaem 97 
                    ++g+l+k+  ++ ++pctp+gv+ llke+g+el+gk++vv+Grs+ivg+p++ lL++++atVtvchs+tkdl+ei+++adi+v+a+Gk+e++k+++
     KKY21574.1 128 SIGELAKRggKPLFVPCTPQGVMVLLKESGVELSGKNAVVLGRSDIVGSPVSYLLKNADATVTVCHSRTKDLKEIVKNADILVAAIGKAEFVKGDW 223
                    689999988899************************************************************************************ PP

                    S-TT-EEEE---EEC......-TTEEE-SB-HHHHCTTSSEE--TTTSCHHHHHHHHHHHHHHHHH CS
  THF_DHG_CYH_C  98 vkegavviDvGinrv......ekgklvGDvdfeevkevasaitPvpgGVGpmTvamllkntleaak 157
                    +k+gavviDvG+n +      ++++lvGDv+f+++ evas+itPvpgGVGpmTvamll+n++++a 
     KKY21574.1 224 LKPGAVVIDVGTNYIpdstkkTGQRLVGDVEFSSAVEVASHITPVPGGVGPMTVAMLLQNVVNSAT 289
                    ******************9988899*************************************9986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.28
                    SSEE--TTTSCHHHHHHHHHHHHHH CS
  THF_DHG_CYH_C 130 asaitPvpgGVGpmTvamllkntle 154
                    +s itP p G G+ T++m l++ + 
     KKY21574.1 369 VSGITPTPLGEGKSTTTMGLTQAIG 393
                    678***************9888765 PP

>> THF_DHG_CYH  Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   0.7   7.5e-42   1.9e-38       2     116 .]       6     122 ..       5     122 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 7.5e-42
                  --HHHHHHHHHHHHHHHHHHHHHH..T---EEEEEEES--HHHHHHHHHHHHHHHHTT-EEEEEEE-TT--HHHHHHHHHHHHH-TT--EEEE-SS-S CS
  THF_DHG_CYH   2 ldGkalakeireelkeeveklkek..gvkpkLavilvgddpasevYvrnkkkaceevGieseliklpedvseeellklieelneddsvdGilvqlPlp 97 
                  +dG+a+ak ire+l+ ++++ +++  ++ p+L +i+vgd+ +s++Yvr+k ka++e++ie+el+klpe+++e+ell++i ++n+d+s++GilvqlPlp
   KKY21574.1   6 IDGTAIAKGIRERLHTQIQETQKRnpRFIPNLKIIQVGDRSDSTTYVRMKLKAAQEANIECELVKLPESITEAELLQQIISFNNDPSIHGILVQLPLP 103
                  8*******************99855699********************************************************************** PP

                  TTS-HHHHHCCS-GGGBTT CS
  THF_DHG_CYH  98 khidekaileaispeKDVD 116
                  kh++e+ai++a++ eKDVD
   KKY21574.1 104 KHVSEHAITSAVADEKDVD 122
                  ******************9 PP

>> OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   2.9e-06    0.0075     176     225 ..     183     236 ..     175     247 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.9e-06
                      S..CTT-EEECSC....HHHHTTSSEEEE----SS-SB-GGGS-TT-EEEE-S-- CS
  OCD_Mu_crystall 176 e.fefevsackse....eeavegadivvtvTaakapilkaewvkpGahinavgad 225
                      + ++  v++c+s     +e v++adi+v++   ka  +k +w+kpGa +  vg +
       KKY21574.1 183 KnADATVTVCHSRtkdlKEIVKNADILVAAI-GKAEFVKGDWLKPGAVVIDVGTN 236
                      43677888886542222899********986.67789************999975 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.3   3.4e+03      14      29 ..     379     394 ..     376     400 .. 0.82
   2 ?   12.2   0.0   3.9e-05     0.099     108     147 ..     739     779 ..     730     865 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.3
                 SSHHHHHHHHHHHTTS CS
    GTP_EFTU  14 hGKtTLtdrLlyktga 29 
                  GK+T+t  L+++ ga
  KKY21574.1 379 EGKSTTTMGLTQAIGA 394
                 7******999988775 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 3.9e-05
                 THHHHHHHHHHHHTTTEEEEEEESCGST.HHHHHHHHHHHH CS
    GTP_EFTU 108 epqteevlrlalkegvpiivfiNKmDrl.kaelkeiveevk 147
                 +++ +++++ a+++g+p++v+iNK     +ae++ i+ee  
  KKY21574.1 739 CVNLRKHIQNAKSYGIPVVVAINKFETDtEAEVNVIQEEST 779
                 77889*******************99876777777766654 PP

>> Helicase_C_4  C-terminal domain on Strawberry notch homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.4e-05      0.11     111     169 ..     461     521 ..     458     590 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.4e-05
  Helicase_C_4 111 hRsnqasaPeyrllvtelaGerRfasavArrLesLGAltrg.drra.aegrdlsefnldsk 169
                   h   q  +P+yr lv + +G r f  ++ rrL++LG    + d  + +e r +++ ++d +
    KKY21574.1 461 HEKTQKDGPLYRRLVPTKKGKREFSPIMFRRLKKLGITKTNpDELTeEEIRRFARLDIDPE 521
                   666799******************************7644414445455566777777654 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.87   2.2e+03      22      77 ..      57     115 ..      51     118 .. 0.66
   2 ?   -3.9   0.0       3.2   8.2e+03     102     229 ..     597     617 ..     577     625 .. 0.62
   3 ?   11.1   0.1   8.5e-05      0.22      69     129 ..     742     819 ..     740     864 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.87
                   HHHHHTTCEEEEE.ECSTT-HHHHHHHHHHHHHTT-S....EEEE--SSHHHHH.HHHHHHH CS
  Peripla_BP_4  22 eaakelgaevtvv.gdaendaaeQvaqiedaiakgvd....giivapvdstala.palkkak 77 
                   +aa+e+++e+++v  +++    ++++ ++++i+ + d    gi+v+   ++ ++ +a+  a 
    KKY21574.1  57 KAAQEANIECELVkLPES---ITEAELLQQIISFNNDpsihGILVQLPLPKHVSeHAITSAV 115
                   688999999999954444...45555555555555333344888888888777767776665 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.2
                   C-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTTTECEEEESSCCHHHCH CS
  Peripla_BP_4 102 fdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqalealltanpldgilaandgmaega 198
                   +d                                                                                               
    KKY21574.1 597 ADDI--------------------------------------------------------------------------------------------- 600
                   3333............................................................................................. PP

                   HHHHHHTTTTSTEEEEEES-HHHHHHHHHTT CS
  Peripla_BP_4 199 lealeaaglagkvvvtgqDatpealeaikdG 229
                                  +g  +t  +++aik  
    KKY21574.1 601 --------------GVGGALTALMKDAIKPN 617
                   ..............55555555555655554 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 8.5e-05
                   HHHHHHHHHHTT-E.EEEESTTGCTTT-CEEEEEC-HHHHHHHHH.................HHHHHHCTTH.EEEEEE CS
  Peripla_BP_4  69 lapalkkakaaGIp.VvafdsddapsgerlayvgfdneaaGelqa.................eylaeklggkkgkvvil 129
                   l++ ++ ak+ GIp Vva++ ++++++  + +++  ++aaG+ +a                 e+++ +  +  +++ +l
    KKY21574.1 742 LRKHIQNAKSYGIPvVVAINKFETDTEAEVNVIQEESTAAGAEAAipsdhwargglgavelaEAVVAASQKP-KDFKLL 819
                   56789********935558888999*****************999888877777777777764444444333.444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (939 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.53
# Mc/sec: 5339.29
//
Query:       KKY21575.1  [L=329]
Description: putative eukaryotic translation initiation factor 3 subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-22   78.4   1.0    1.5e-08   35.2   0.1    6.1  6  WD40         WD domain, G-beta repeat
      3e-09   37.0   0.0     0.0091   16.3   0.1    4.8  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0023   17.9   0.1        4.8    7.0   0.0    3.1  3  eIF2A        Eukaryotic translation initiation factor eIF2A
      0.006   15.9   0.0      0.081   12.2   0.0    2.4  3  WD40_like    WD40-like domain
  ------ inclusion threshold ------
      0.039   12.9   0.1       0.78    8.6   0.0    2.4  3  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
      0.053   13.1   0.0       0.26   10.8   0.0    2.1  1  SGL          SMP-30/Gluconolactonase/LRE-like region
       0.09   11.4   0.1       0.12   11.0   0.1    1.2  1  Nup160       Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.051   1.3e+02       7      34 ..       6      34 ..       3      37 .. 0.87
   2 !   35.2   0.1   5.8e-12   1.5e-08       2      38 .]      43      80 ..      42      80 .. 0.95
   3 ?    1.8   0.0      0.19     5e+02       6      27 ..      89     110 ..      84     126 .. 0.70
   4 ?    1.6   0.1      0.22   5.7e+02      17      33 ..     154     171 ..     133     172 .. 0.71
   5 !   19.4   0.0   5.3e-07    0.0014       9      36 ..     181     211 ..     173     213 .. 0.85
   6 !    9.0   0.0     0.001       2.7       5      36 ..     276     308 ..     272     309 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.051
                EESS.SSEEEEEEETTSSEEEEEETTSEE CS
        WD40  7 ltGH.ssvtslafspdgawlasGsdDgtv 34
                l GH  s + +++ +dg+ l+s  +D+ +
  KKY21575.1  6 LQGHeRSLSQIKYTKDGDILFSVAKDKVI 34
                6799877999***********99999877 PP

  == domain 2  score: 35.2 bits;  conditional E-value: 5.8e-12
                EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38
                + l+t+ GH + ++ ++ sp+ + lasG+ D+t+r+W+
  KKY21575.1 43 ERLGTYHGHlGAIWTVDISPNTRILASGGADNTIRLWN 80
                6789*****999*************************8 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.19
                 EEESSSSEEEEEEETTSSEEEE CS
        WD40   6 tltGHssvtslafspdgawlas 27 
                 t++  + +  +afs dg+ l++
  KKY21575.1  89 TWEFPTAIKRVAFSEDGKQLLA 110
                 54433449999******99876 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.22
                 E.EETTSSEEEEEETTSE CS
        WD40  17 a.fspdgawlasGsdDgt 33 
                 a +s   +++++G++Dg+
  KKY21575.1 154 AgWSYLDKYIIAGHEDGS 171
                 267777889999****96 PP

  == domain 5  score: 19.4 bits;  conditional E-value: 5.3e-07
                 SS.SS..EEEEEEETTSSEEEEEETTSEEEE CS
        WD40   9 GH.ss..vtslafspdgawlasGsdDgtvri 36 
                  H s+  +++++fspdg++++++s+D++ ++
  KKY21575.1 181 IHeSDyqINDIQFSPDGTYFITASKDKSAKL 211
                 5877789********************9886 PP

  == domain 6  score: 9.0 bits;  conditional E-value: 0.001
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvri 36 
                 +  +GH ++ + +a +p g   asG++Dg vr+
  KKY21575.1 276 GRVKGHfGPLNTIAAHPQGVGYASGGEDGYVRM 308
                 5679**888************99********96 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.25   6.3e+02      37      63 ..       9      35 ..       6      51 .. 0.77
   2 !   16.3   0.1   3.5e-06    0.0091      36      85 ..      50      97 ..      17     157 .. 0.86
   3 ?   -0.1   0.0      0.46   1.2e+03      37      61 ..     147     171 ..     145     180 .. 0.82
   4 !   11.8   0.0   8.8e-05      0.22      27      80 ..     174     227 ..     171     238 .. 0.86
   5 ?   -1.7   0.0       1.4   3.7e+03      43      68 ..     287     312 ..     270     324 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.25
  ANAPC4_WD40 37 edsevrsLaWkpdgklLavaysdgevr 63
                 ++++ +++++ +dg +L  + +d  + 
   KKY21575.1  9 HERSLSQIKYTKDGDILFSVAKDKVIG 35
                 567788999********9999887665 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 3.5e-06
  ANAPC4_WD40 36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85
                 ++ + +  +  +p+ ++La + +d+++rl ++++g+ v++++  +   ++
   KKY21575.1 50 GHLGAIWTVDISPNTRILASGGADNTIRLWNVQTGENVKTWEFPTA--IK 97
                 555677788889**************************99987655..55 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.46
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdge 61 
                  eds+ +   W+  +k +  +++dg+
   KKY21575.1 147 EDSKATVAGWSYLDKYIIAGHEDGS 171
                  577888889**************96 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 8.8e-05
  ANAPC4_WD40  27 qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  +++ ++e +++d ++++++++pdg+ +  a +d + +l+++ +  v++++ +++
   KKY21575.1 174 EQLLHAEIHESDYQINDIQFSPDGTYFITASKDKSAKLVSSRDLSVLKTYVADT 227
                  566677778999******************************999999887665 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 1.4
  ANAPC4_WD40  43 sLaWkpdgklLavaysdgevrlldae 68 
                   +a +p+g   a + +dg vr++  e
   KKY21575.1 287 TIAAHPQGVGYASGGEDGYVRMHTFE 312
                  56667888888999999999998776 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0019       4.8     105     162 ..      57     112 ..      51     128 .. 0.86
   2 ?   -1.5   0.0      0.74   1.9e+03     139     159 ..     144     164 ..     131     167 .. 0.78
   3 !    6.7   0.0    0.0023         6     145     163 ..     187     205 ..     178     214 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0019
                 EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--.EEEE-TTSSEEEEEE CS
       eIF2A 105 tiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanat.lvewspdgryvlTat 162
                 t+  sp+ ++++ +G  n+   + +w+v++ +++++ e ++a   v +s dg+ +l  t
  KKY21575.1  57 TVDISPNTRILASGGADNT---IRLWNVQTGENVKTWEFPTAIkRVAFSEDGKQLLAVT 112
                 67789999*********99...****************99986269******9998655 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.74
                 EEEE-TT--EEEE-TTSSEEE CS
       eIF2A 139 akaeaanatlvewspdgryvl 159
                  + e ++at+  ws+ ++y++
  KKY21575.1 144 ITCEDSKATVAGWSYLDKYII 164
                 577889999999999999986 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0023
                 T--EEEE-TTSSEEEEEE- CS
       eIF2A 145 natlvewspdgryvlTatt 163
                 +  ++++spdg+y++Ta+ 
  KKY21575.1 187 QINDIQFSPDGTYFITASK 205
                 556899**********986 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   3.2e-05     0.081       3      52 ..      55     103 ..      53     155 .. 0.82
   2 ?    0.5   0.0      0.12     3e+02       3      33 ..     188     218 ..     186     227 .. 0.84
   3 ?   -1.4   0.0      0.45   1.1e+03     189     233 ..     219     265 ..     207     279 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.2e-05
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklld 52 
                 i+++dis++  +++ Gg d+++++ +++++e v   e f   +  v + +
  KKY21575.1  55 IWTVDISPNTRILASGGADNTIRLWNVQTGENVKTWE-FPTAIKRVAFSE 103
                 89*****************************998764.555665555555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.12
   WD40_like   3 iYsidiskkgslilyGgkddkctvlklesle 33 
                 i  i++s++g++++  +kd+ +++++ + l 
  KKY21575.1 188 INDIQFSPDGTYFITASKDKSAKLVSSRDLS 218
                 567999****************999877665 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.45
   WD40_like 189 ilqkidvegkPecil...lvddylivGgsfkyllliNiklnvntfklr 233
                 +l+ +  ++ P  ++     +d++i+Gg    + +  + +   +f+ r
  KKY21575.1 219 VLKTYVADT-PLNTAaltAKKDFVILGGGQAAMDVTTTSARQGKFEAR 265
                 555555554.43332111457899999988887777776666666655 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.036        91      36      85 ..      64     112 ..      43     154 .. 0.60
   2 ?    8.6   0.0    0.0003      0.78     182     212 ..     179     210 ..     128     213 .. 0.73
   3 ?   -2.9   0.0         1   2.6e+03     190     214 ..     285     309 ..     247     311 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.036
    Ge1_WD40  36 yaikvkntgeglvrvvnketeeraLlkglkgevldlafahvsskillavd 85 
                   i ++  ++  +r+ n++t e +   ++ ++++ +af+    k+llav 
  KKY21575.1  64 TRILASGGADNTIRLWNVQTGENVKTWEFPTAIKRVAFSEDG-KQLLAVT 112
                 334444445666777777777777777777777777776543.3444444 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0003
    Ge1_WD40 182 lkieehs.liveaafspdGtalatasedGevk 212
                  +i+e   +i +  fspdGt   tas+d   k
  KKY21575.1 179 AEIHESDyQINDIQFSPDGTYFITASKDKSAK 210
                 466666559******************97766 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1
    Ge1_WD40 190 iveaafspdGtalatasedGevkff 214
                 + + a  p G   a   edG+v+++
  KKY21575.1 285 LNTIAAHPQGVGYASGGEDGYVRMH 309
                 5555667889999999999999875 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0001      0.26      37     110 ..      90     210 ..      47     236 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0001
         SGL  37 ldtpesvGaiaprkd.grlvvasksgl.............................................all..dlasgeletladeeedekpllr 87 
                 +++p  +  +a  +d ++l++  ++++                                             +++  + + ++ e+l++ e +e  + +
  KKY21575.1  90 WEFPTAIKRVAFSEDgKQLLAVTEKRMgylgtivvfdirygddlsdqtsehslritcedskatvagwsyldkYIIagHEDGSSGEQLLHAEIHE-SDYQ 187
                 5555533333333441333333333336777777777777777777777777777777777777777666664444422334556666665466.99** PP

         SGL  88 fNDgvvdpdGrlwfGtmgdeeak 110
                 +ND++++pdG ++++  +d++ak
  KKY21575.1 188 INDIQFSPDGTYFITASKDKSAK 210
                 **************999888765 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   4.6e-05      0.12     212     362 ..      47     206 ..      13     227 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.6e-05
                 -TT-ECEEEEET.....TTTEEEEEETT-EEEEEETTTTEEEEEEE--.....-SSSTTS--SSEESEEESSSSEEEE..................... CS
      Nup160 212 gasvalsldvavavveigqtylfalsrdgkLrvWnlltgkclatidll....rdeeaqdessskstldpaesslirvs.............dggqsylv 293
                   + +l +  +v+++  +  +l++   d+++r+Wn++tg  + t + +    r + ++d ++     +    +l   +             ++ + +l+
  KKY21575.1  47 TYHGHLGAIWTVDISP-NTRILASGGADNTIRLWNVQTGENVKTWEFPtaikRVAFSEDGKQLLAVTEKRMGYLGT-IvvfdirygddlsdQTSEHSLR 143
                 5555666666677776.8888888999*****************88886664333333322222222222222222.1356777777777777777777 PP

                 ..E--GGG-EEEEEEEEEEE-....SSSEEEEES-S--.----S-TT--EEEEEEEEE-TTEEEEEEEEEE CS
      Nup160 294 vtyspssggefkvwkvkkedtsvs.lglvdlfleqtiv.padpdssnvweLrDfaltssekgfelwalwkn 362
                 +t+  +s+++   w    +++++  +g +d  + ++++ +++ +s  ++++ D +++++  g+  +++ k+
  KKY21575.1 144 ITC-EDSKATVAGWS---YLDKYIiAGHEDGSSGEQLLhAEIHES--DYQINDIQFSPD--GTYFITASKD 206
                 777.55667777777...333333356666666666665555444..777777777777..5555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2277.53
//
Query:       KKY21576.1  [L=364]
Description: hypothetical protein UCRPC4_g03527 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00023   21.5   0.8    0.00071   19.9   0.3    2.0  2  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra
     0.0066   16.7   0.2      0.012   15.9   0.2    1.5  1  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra


Domain annotation for each model (and alignments):
>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.3   7.9e-08   0.00071      10      75 ..       2      64 ..       1     110 [. 0.71
   2 ?   -1.0   0.0      0.22   1.9e+03      88     110 ..     205     228 ..     199     247 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 7.9e-08
                     ESS-HHHHHHHHTTTTGGGGT-TTEEEEECSESTSSS.....TTTEEEEECCCSSEEEEEEEEEET.TTTEE CS
  Polyketide_cyc2 10 iaappekVwalvsdfenwprWhpevarveleggggpa.....rgvegtvrvggrgtvreelvevdp.egrll 75
                     i ap++ V+ ++ +f++wp+W+ +va+  ++ +  p+             v g    ree +++ + ++r++
       KKY21576.1  2 ISAPADLVFTHLLNFKAWPEWSKSVADINVTLRATPLvnlyhH------NVEG---RREESEQWLArAPRVW 64
                     88************************99888778885332220......2222...2333333332234444 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.22
                      EEEEEEEEECCET.EEEEEEEEEE CS
  Polyketide_cyc2  88 yvatwtvtpdggg.trvtwtgefd 110
                      y+ t  vtp+g+  + +t t++  
       KKY21576.1 205 YTCTHFVTPEGTAsCVLTTTMHPG 228
                      667788999997669888888544 PP

>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   1.3e-06     0.012       1      82 [.       2      79 ..       2     122 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.3e-06
                    ESS-HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE.....E..EEECSTTSSCEEEEEEEEEEETTTEEECTTCCCCCEEEEEEE CS
  Polyketide_cyc  1 vpapadqvyalvadvesypeflphcssvevleeaes..glsa..dlevgfggltesftarvtldppeeitfklvegdfkslegkWt 82
                    ++apad v+  + ++  +pe+++ + +  v+ +a+   +     +++ g+ + +e + ar+ ++ + e      e + +   + Wt
      KKY21576.1  2 ISAPADLVFTHLLNFKAWPEWSKSVADINVTLRATPlvN--LyhHNVEGRREESEQWLARAPRVWDSE------ESLTDTSITLWT 79
                    79*******************************996443..144777777778888888877776666......344444455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2686.33
//
Query:       KKY21577.1  [L=423]
Description: putative isocitrate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-73  246.7   0.0    4.3e-73  246.4   0.0    1.0  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.4   0.0   2.4e-77   4.3e-73       1     348 []      18     410 ..      18     410 .. 0.92

  Alignments for each domain:
  == domain 1  score: 246.4 bits;  conditional E-value: 2.4e-77
                 EEEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE---THHHHHHHSSSS-HHHHHHHHHSSEEEEEE---CSSSSSSHHH.HHHHHHHHTT.EEEE CS
      Iso_dh   1 kiallegdgiGpevveaalkvlkaakekaglelefeevdvGgaaidetgeplpeetleaikeadvvllgavgtpkekevrpen.gLlaLrkeld.lfan 97 
                 k+ ++ ++ +G+e+++ +++ +k+   +++l+++++++d+G +++det+++++ ++++aik+++v +++a++tp+  e+r+++  L++++ +++ +++n
  KKY21577.1  18 KVKNPVVELDGDEMTRIIWQDIKDRFIHPYLDVDLKYYDLGLPYRDETEDQVTVDAANAIKKYSVGVKCATITPD--EARVKEfHLKQMWLSPNgTIRN 114
                 57788999*******************************************************************..77777777********99**** PP

                 EEEEE-B.CCTTCCSSBTHHHHCT.-EEEEEEE-SSCGGCSSEEEEET...................TG..GGGEEEEEEEEEHHHHHHHHHHHHHHHH CS
      Iso_dh  98 lrpvkvf.eklkvksplkrevvee.vdlvivReltggiYfgeekekkg...................si.fteevavdtklyseeeieriaraafelAl 174
                 ++ ++vf e+++ +++++  v+++ + ++i R+++g++Y++++++++g                   +  f++  + +t+  + + i+ +a+a+f+lAl
  KKY21577.1 115 ILGGTVFrEPIVIPKIPR-LVPGWtKPIIIGRHAFGDQYRAKDRVIDGpgklemiftpeggepqsitVYdFKGPGVAQTQYNTDDSISGFAHASFKLAL 212
                 *******88899999998.7****899*************************************9983346677666666666666************* PP

                 HTTTSEEEEEESTTTTHHHH.HHHHHHHHHHCC......TTTTSEEEEEEHHHHHHHHHHSGGGGS.EEEE-HHHHHHHHHHHHHHTTSGCC-EEEEEE CS
      Iso_dh 175 krgkkkvtlvdKanvlksse.lwrkiveevaee......eypdielehqlvDsaamqlvkspkqfd.VivtkNlfGDilSDeaaalvGslGllpSaslg 265
                 ++ + ++++++K+++lk+++ ++++i++e++e+      e+++i++eh+l+D++++q++ks+   + +++tkN++GD++SD +a+ +GslGl++S  + 
  KKY21577.1 213 EK-ELPLYMSTKNTILKKYDgRFKDIFQEIYEStykkdfEAKKIWYEHRLIDDMVAQMIKSE--GGfIMATKNYDGDVQSDIVAQGFGSLGLMTSQLVT 308
                 **.***********************************************************..4449******************************* PP

                 T.SS-EEEEESS---CCCTTSS-......S-THHHHHHHHHHHHHTTT-HHHH......HHHHHHHHHHHHH.TSCCHHHCTTS.....TCCCHHHHHH CS
      Iso_dh 266 e.kkvaifEavHGsapdiagkdk......aNpiavilSaalmLryslgleeaA......dkiekAvekvlea.givTkDlagea.....akevstsefg 345
                 + + +   Ea+HG+++++ + ++      +Npia+i+++++ L  +  l+e+       + +e+Av +++++ gi+TkDla        +  v+t+ef+
  KKY21577.1 309 PdGLTFESEAAHGTVTRHYREHQkgretsTNPIASIFAWTRGLVKRGTLDETPevitwaEGLERAVIETVNKdGIMTKDLALACgrkerEAWVTTTEFM 407
                 *6667899**************99*******************997666665466666699*********999********988888888899****99 PP

                 HHH CS
      Iso_dh 346 dav 348
                 +av
  KKY21577.1 408 QAV 410
                 987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3049.36
//
Query:       KKY21578.1  [L=257]
Description: putative short-chain dehydrogenase reductase family oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-33  114.9   0.0    4.2e-33  114.4   0.0    1.1  1  adh_short        short chain dehydrogenase
    4.3e-20   72.3   0.0    5.4e-20   72.0   0.0    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
     0.0053   16.7   0.0      0.019   14.9   0.0    1.7  2  KR               KR domain
     0.0065   17.0   0.0      0.015   15.9   0.0    1.5  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
     0.0085   16.4   0.0      0.045   14.0   0.0    1.9  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
  ------ inclusion threshold ------
      0.032   13.7   0.0       0.21   11.0   0.0    1.9  1  Epimerase        NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   0.0   1.4e-36   4.2e-33       8     190 ..      10     194 ..       7     198 .. 0.93

  Alignments for each domain:
  == domain 1  score: 114.4 bits;  conditional E-value: 1.4e-36
                 TTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGG...CSHHHHHH CS
   adh_short   8 assGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfse...lseeewer 103
                 as+GIG a+a++++++G +v++++r++e+le++++e ++  +k+ a+++D+++ +++  + + +++ +  ld +  N Gi+++++fs+   ++ + + +
  KKY21578.1  10 ASRGIGEALARKFVENGSSVIAIGRRKENLERLVNEYGN--DKVSAVPFDISNLAAIPSFCKSIIDSHPDLDYILFNSGIQRKADFSDpdsIDMSVISE 106
                 89************************************8..58*************************************8888887622255566899 PP

                 HHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short 104 vievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                  + +N+ +++ +t+ +lp +l k+ ++    v+S  ++vp++  + Y+AsKaa+++++ sl+ +la+++++v  + P++v+T++  ++
  KKY21578.1 107 EFTINYLSYLAITKGFLPLFLgKKGEAGLCYVTSALALVPLPPRSNYCASKAALHQWIISLRYQLAESRVKVYELLPPAVQTELHDAK 194
                 9******************999999999*******************************************************98765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0   1.8e-23   5.4e-20       2     200 ..      10     211 ..       9     222 .. 0.86

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 1.8e-23
                   TTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGG...H-H CS
  adh_short_C2   2 aasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfle...tsr 92 
                   a +gIG+a+A+++ e+G +v++  +++e+   +e+l++e+g++ v  ++ D+++ +++ ++ + + +++  lD+++ n gi +k  ++f +   ++ 
    KKY21578.1  10 ASRGIGEALARKFVENGSSVIAIGRRKEN---LERLVNEYGNDkVsaVPFDISNLAAIPSFCKSIIDSHPDLDYILFNSGIQRK--ADFSDpdsIDM 101
                   459*******************9999988...999999999776667*************************************..55555222788 PP

                   HHHHHHHHHHTHHHHHHHHHHHH..HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHH CS
  adh_short_C2  93 eefdraldvnlyslfllakaalp..lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfd 186
                   + + + + +n  s+++++k +lp  l k+g + +  ++s  a + +p  + y+a+Kaal++ + +l ++l++ +++v    p +++T++ ++ k+++
    KKY21578.1 102 SVISEEFTINYLSYLAITKGFLPlfLGKKGeAGLCYVTSALALVPLPPRSNYCASKAALHQWIISLRYQLAESRVKVYELLPPAVQTELHDA-KHQP 197
                   889999*****************63335557779999**************************************************99765.4467 PP

                   HHHHHHHHHSTTSS CS
  adh_short_C2 187 elleelearaplgr 200
                   ++++  +   pl +
    KKY21578.1 198 DIKNGRNFGMPLDQ 211
                   77776666666665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   6.2e-06     0.019      11     102 ..      13      98 ..      10     106 .. 0.81
   2 ?   -1.2   0.0      0.55   1.6e+03     133     161 ..     137     165 ..     132     176 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.2e-06
                 HHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-.EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR  11 gLGlelarwlaekgarhlvllsRsaaadedskaliaelealga.evevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 g+G +lar  +e+g + ++ ++R+   +e+ +   + ++++g  +v++v+ D+s+ +a+ +  ++i +++p +  ++   g+ r++ +++ ++
  KKY21578.1  13 GIGEALARKFVENGSS-VIAIGRR---KENLE---RLVNEYGNdKVSAVPFDISNLAAIPSFCKSIIDSHPDLDYILFNSGIQRKADFSDPDS 98 
                 89************76.6677888...22333...3444555549********************************9999999999887665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.55
                 EEEEHHHHH--TT-HHHHHHHHHHHHHHH CS
          KR 133 lfSSiagllgsagqanYaaaNaflDalae 161
                 +++S+ +l+  + ++nY a  a l++++ 
  KKY21578.1 137 YVTSALALVPLPPRSNYCASKAALHQWII 165
                 67899999999999****99999887654 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.9e-06     0.015      10      48 ..      14      51 ..      12      71 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.9e-06
                   HHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC...- CS
  F420_oxidored 10 mgealasgllaagaqpheivvansrnpekaeelaeelg...v 48
                   +geala++++++g   ++++ a  r +e +e l +e+g   v
     KKY21578.1 14 IGEALARKFVENG---SSVI-AIGRRKENLERLVNEYGndkV 51
                   8************...9999.669*************95443 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.5e-05     0.045       8      67 ..      13      68 ..      10      73 .. 0.83
   2 ?   -0.5   0.0      0.45   1.4e+03      91     124 ..     132     173 ..     131     178 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-05
                     HHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHH CS
  Sacchrp_dh_NADP  8 svGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaall 67
                     ++G+a+a++ +++++    ++ ++r ke+le+l+++  + +++a+ +d++n +a + + +
       KKY21578.1 13 GIGEALARKFVENGS---SVIAIGRRKENLERLVNEYGNDKVSAVPFDISNLAA-IPSFC 68
                     466666666666665...6********************************999.66555 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.45
                      HHT-EEEESS-........BCGCCSCHCCSHHHHHTHHHHHH CS
  Sacchrp_dh_NADP  91 etgvhyvdtsi........skeertnyalreavlklkekake 124
                      e+g  yv+ +         s+ + +  al++++++l+ + +e
       KKY21578.1 132 EAGLCYVTSALalvplpprSNYCASKAALHQWIISLRYQLAE 173
                      677889997778888888888888999999999888877765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.9e-05      0.21      10     157 ..      14     168 ..      10     181 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.9e-05
                 HHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHH....HH.T-SEEEE--S.---HHHHHHSHHHHHHHHTHHHH CS
   Epimerase  10 iGsalvkallekgyevigldrlssasntarledl......elveldltdrsalerlfk....ee.qpdavihlAa.vggvaassedpadfieknlqgtl 96 
                 iG al++++ e+g  vi++ r+  ++n +rl +       + v  d+ + +a+  ++k    ++ + d+++   + +   + s  d  d+  +  + t 
  KKY21578.1  14 IGEALARKFVENGSSVIAIGRR--KENLERLVNEygndkvSAVPFDISNLAAIPSFCKsiidSHpDLDYILFNSGiQRKADFSDPDSIDMSVISEEFTI 110
                 8*********************..555555544467999977888888877655444411104444444444444344444444455566667777888 PP

                 HHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHH CS
   Epimerase  97 nlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveaya 157
                 n l+++  ++    lfl+     G       ++ +   pl+p+s Y a+K+a ++ + +++
  KKY21578.1 111 NYLSYLAITKGFLPLFLGKKGEAGLCYV---TSALALVPLPPRSNYCASKAALHQWIISLR 168
                 8888888887778889988888886666...566667799999999999999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1578.66
//
Query:       KKY21579.1  [L=366]
Description: putative zinc knuckle transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-09   35.5  25.3    9.4e-05   22.3   1.6    4.8  5  zf-CCHC    Zinc knuckle
     0.0046   16.8   5.0       0.65    9.9   0.1    2.9  2  zf-CCHC_6  Zinc knuckle
  ------ inclusion threshold ------
      0.064   13.4   0.1       0.14   12.3   0.1    1.4  1  EFG_II     Elongation Factor G, domain II
       0.13   12.3  12.4       0.87    9.6   0.5    2.9  3  zf-CCHC_3  Zinc knuckle
        0.4   10.8  10.8      0.065   13.3   4.5    2.3  2  Elf1       Transcription elongation factor Elf1 like
        0.4   10.6  14.0          1    9.3   0.5    3.9  4  PHD        PHD-finger
       0.94    9.4  14.5        1.1    9.1   0.5    3.8  3  zf-CCHC_2  Zinc knuckle
        3.2    7.6  15.5        1.6    8.5   0.8    3.7  4  zf-CCHC_4  Zinc knuckle


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.3      0.26   5.9e+02      11      18 .]     111     118 ..     111     118 .. 0.91
   2 ?   -2.6   0.3       3.2   7.1e+03      13      16 ..     132     135 ..     130     136 .. 0.83
   3 !   10.4   0.1   0.00025      0.56       7      18 .]     244     255 ..     244     255 .. 0.91
   4 !   22.3   1.6   4.2e-08   9.4e-05       2      16 ..     266     280 ..     265     282 .. 0.93
   5 !   17.3   1.7   1.6e-06    0.0036       2      18 .]     290     306 ..     289     306 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.26
                 STTTTSTS CS
     zf-CCHC  11 HiardCpk 18 
                 H + +Cpk
  KKY21579.1 111 HSKAECPK 118
                 999****7 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.2
                 TTTS CS
     zf-CCHC  13 ardC 16 
                 a+dC
  KKY21579.1 132 AKDC 135
                 99** PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00025
                 SSSSSTTTTSTS CS
     zf-CCHC   7 GepGHiardCpk 18 
                 +e+GH a dC++
  KKY21579.1 244 NEEGHKATDCTN 255
                 69********96 PP

  == domain 4  score: 22.3 bits;  conditional E-value: 4.2e-08
                 CTSSSSSSSSTTTTS CS
     zf-CCHC   2 kCynCGepGHiardC 16 
                 +C+nC + GH++rdC
  KKY21579.1 266 QCRNCDQFGHVSRDC 280
                 8************** PP

  == domain 5  score: 17.3 bits;  conditional E-value: 1.6e-06
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                 +C nCGe GH +  C++
  KKY21579.1 290 TCTNCGEKGHTKVRCKQ 306
                 8***********99986 PP

>> zf-CCHC_6  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00029      0.65       2      15 ..     265     278 ..     264     286 .. 0.86
   2 !    7.2   1.4     0.002       4.4       1      14 [.     288     301 ..     288     309 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00029
   zf-CCHC_6   2 vKCknCGAFGHtar 15 
                 + C+nC  FGH  r
  KKY21579.1 265 IQCRNCDQFGHVSR 278
                 58*********875 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.002
   zf-CCHC_6   1 rvKCknCGAFGHta 14 
                 rv C nCG  GHt 
  KKY21579.1 288 RVTCTNCGEKGHTK 301
                 899*********96 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1     6e-05      0.14      13      43 ..     162     192 ..     154     195 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6e-05
      EFG_II  13 kskadedklskaLarlleEDptlrverdeeT 43 
                 ++ +d d +++a++ l++ Dp++++++ eeT
  KKY21579.1 162 SEDRDLDDFKEAFHILCKADPSMTYRMAEET 192
                 567899***********************99 PP

>> zf-CCHC_3  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       5.1   1.1e+04      11      22 ..     244     255 ..     241     258 .. 0.68
   2 ?    9.6   0.5   0.00039      0.87       4      22 ..     264     282 ..     261     289 .. 0.85
   3 ?    9.6   2.0   0.00039      0.87       4      26 ..     288     312 ..     285     325 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.1
   zf-CCHC_3  11 lkkGHwtYECkn 22 
                  ++GH +  C+n
  KKY21579.1 244 NEEGHKATDCTN 255
                 568898888884 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00039
   zf-CCHC_3   4 saaCQkClkkGHwtYECkn 22 
                 +++C +C ++GH +  C +
  KKY21579.1 264 TIQCRNCDQFGHVSRDCEQ 282
                 789***********99995 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00039
   zf-CCHC_3   4 saaCQkClkkGHwtYECkn..ager 26 
                 +++C +C++kGH    Ck+  a e+
  KKY21579.1 288 RVTCTNCGEKGHTKVRCKQppADEN 312
                 679***************8873333 PP

>> Elf1  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.4      0.26   5.8e+02      47      61 ..     125     139 ..     112     154 .. 0.77
   2 ?   13.3   4.5   2.9e-05     0.065      15      65 ..     258     308 ..     242     311 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.26
        Elf1  47 sCkvCgesfetkvna 61 
                 +Ck+C+e  +++ ++
  KKY21579.1 125 TCKICHEAKDCENKR 139
                 688998877776555 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.9e-05
        Elf1  15 kkklptkFdCpfCnheksvevkldkkekiaevsCkvCgesfetkvnalsep 65 
                 +++ p++ +C +C++   v+ + ++ ++  +v+C++Cge+ +tkv+  + p
  KKY21579.1 258 APRDPSTIQCRNCDQFGHVSRDCEQPKDWSRVTCTNCGEKGHTKVRCKQPP 308
                 45568899********************************99999765555 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.9      0.17   3.9e+02       2      12 ..     126     136 ..     125     149 .. 0.71
   2 ?   -1.4   0.0         1   2.3e+03      23      36 ..     172     185 ..     169     194 .. 0.70
   3 ?    9.3   0.5   0.00046         1       9      33 ..     258     284 ..     252     288 .. 0.73
   4 ?    7.1   1.4    0.0022       4.9      12      38 ..     285     313 ..     278     319 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.17
                 BTTTTSTTSTT CS
         PHD   2 CavCkkksdee 12 
                 C++C++++d e
  KKY21579.1 126 CKICHEAKDCE 136
                 99999933333 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1
                 CEEETTTSSSTHSH CS
         PHD  23 rwfHqkClkpples 36 
                 ++fH  C   p  +
  KKY21579.1 172 EAFHILCKADPSMT 185
                 68999997766555 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00046
                 TSTTSCEEEETTTSCEEET..TTSSST CS
         PHD   9 sdeeeelvqCdgCkrwfHq..kClkpp 33 
                 +  +  ++qC +C++  H+  +C +p+
  KKY21579.1 258 APRDPSTIQCRNCDQFGHVsrDCEQPK 284
                 5567789***********733577776 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0022
                 TSCEEEETTTSCEEETT..TSSSTHSHHS CS
         PHD  12 eeelvqCdgCkrwfHqk..Clkpplesee 38 
                 +   v C +C++  H+k  C +pp +++ 
  KKY21579.1 285 DWSRVTCTNCGEKGHTKvrCKQPPADENM 313
                 556799*********86559999988654 PP

>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.5     0.076   1.7e+02       6      10 ..     126     130 ..     125     132 .. 0.84
   2 ?    9.1   0.5    0.0005       1.1       5      19 ..     266     280 ..     262     282 .. 0.84
   3 ?    5.5   1.4    0.0066        15       6      14 ..     291     299 ..     290     299 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.076
   zf-CCHC_2   6 ChiCg 10 
                 C+iC+
  KKY21579.1 126 CKICH 130
                 ****9 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0005
   zf-CCHC_2   5 vChiCgkkGHyIqdC 19 
                 +C+ C + GH  +dC
  KKY21579.1 266 QCRNCDQFGHVSRDC 280
                 7*********88888 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0066
   zf-CCHC_2   6 ChiCgkkGH 14 
                 C  Cg kGH
  KKY21579.1 291 CTNCGEKGH 299
                 ********* PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.54   1.2e+03      40      49 .]     109     118 ..     107     118 .. 0.85
   2 ?   -3.1   0.9       3.1     7e+03      34      47 ..     126     135 ..     123     136 .. 0.65
   3 ?    8.5   0.8   0.00071       1.6      33      48 ..     266     281 ..     263     282 .. 0.89
   4 ?    8.3   0.6   0.00084       1.9      33      48 ..     290     305 ..     286     306 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.54
   zf-CCHC_4  40 lGHsdkrCdk 49 
                 l Hs ++C+k
  KKY21579.1 109 LSHSKAECPK 118
                 88******95 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.1
   zf-CCHC_4  34 CyiCgvlGHsdkrC 47 
                 C i     H++k+C
  KKY21579.1 126 CKI----CHEAKDC 135
                 444....4888888 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00071
   zf-CCHC_4  33 fCyiCgvlGHsdkrCd 48 
                  C +C  +GH+ ++C+
  KKY21579.1 266 QCRNCDQFGHVSRDCE 281
                 5**************6 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.00084
   zf-CCHC_4  33 fCyiCgvlGHsdkrCd 48 
                  C++Cg  GH+  rC+
  KKY21579.1 290 TCTNCGEKGHTKVRCK 305
                 5**********99**7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.52
# Mc/sec: 2124.70
//
Query:       KKY21580.1  [L=325]
Description: hypothetical protein UCRPC4_g03531 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-20   74.1   0.0      2e-20   73.4   0.0    1.3  1  Amidohydro_1  Amidohydrolase family
    1.2e-11   44.8   0.1    1.2e-11   44.8   0.1    1.5  2  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   2.3e-24     2e-20      42     344 .]      10     323 ..       6     323 .. 0.73

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 2.3e-24
                   HHHHHTTEEEEEEEEHSSTHHHHHHHHHHHT...SSSEEEEEEESSEGGS...GCCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHH CS
  Amidohydro_1  42 ktalksGtttvadmgattstgiealleaaee...lplglrilggkvsldr...gsaetskasreklkagaaetikgkadgvvkvalapheapafsde 132
                   +++ +sG+tt +dm  + ++ ++ l++ +       +gl +  ++ + +       e+  +++e  ++ + + + ++a + +kv+ + +++ +++  
    KKY21580.1  10 RALCQSGITTGLDMACWPHDKVKSLRNRSGMadiRSPGLPATCPGSMHSAilpLPSEHLVTNAEDAIRFVHDRLNEEA-DYIKVIADVSGPDQAT-- 103
                   577899***********9998888888555522333465555555555559**8889999999999999866666555.5556899999999997.. PP

                   HHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEE............. CS
  Amidohydro_1 133 elkealkeakkrdlpvaiHaletkgevedaeaafgetiehgthlevaeslglldeiklilahgvhltpteaellkerlkeagva............. 216
                    l  +++ea+++ + v +Ha+ t++++ +a++a ++ i+h  + e +++     +i  +l  +    pt + +    ++++ ++             
    KKY21580.1 104 -LNTLVSEAHRYHKLVIAHAAYTTAFH-MALDAKADIITHSPLDETLDE----STISRMLTENHIAVPTLVMM---EAMSKPISlftivktlffrpl 191
                   .7777*********************9.999999999999666677776....55555666666666662222...333444444455566666665 PP

                   ......HHHHHHHH............SEHHHHHHHHHHHHTSCEEEEEECTTSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHH CS
  Amidohydro_1 217 ......hcpfsnsi............lrsgrealrkaldeGvkvglgtDgaasgnslnlleelrlalklqrgllyedeegglslkealrmaTingAk 295
                                +             +  r+ +  + ++Gv + +gtD   +++ ++    +r++   +r l   + e+g+s  ++lr aT  +A+
    KKY21580.1 192 lvlgvlR------VlranpsmptgrnYTAARDSVTAMYKAGVPILVGTD---ANSEPDSPAPVRHGESFHRELELLV-EAGMSTVDVLRGATVLAAR 278
                   5555553......033444466555555555566667788999******...8888877777888886666555545.777**************** PP

                   HTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSEEEEEEEETTEEE CS
  Amidohydro_1 296 alglddkvGsievGkdADlvvvdldilaafvglkkdgnvkkvivkGklv 344
                   ++gl ++ G+ievGk+ADlv++  ++l+++  +k+   + +v+++G  v
    KKY21580.1 279 YFGL-KDRGTIEVGKRADLVLLSQNPLEDIRASKS---ILRVWCAGVEV 323
                   ****.599**************5555666666655...********765 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2      0.42   3.8e+03     262     295 ..     100     134 ..      93     145 .. 0.81
   2 !   44.8   0.1   1.3e-15   1.2e-11     357     473 .]     212     324 ..     194     324 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.42
  Amidohydro_3 262 dea.laelvaaadergldvaihaigdaavddvlda 295
                   d+a l+ lv++a+ +   v  ha +++a  ++lda
    KKY21580.1 100 DQAtLNTLVSEAHRYHKLVIAHAAYTTAFHMALDA 134
                   44458889999999988888899888888888876 PP

  == domain 2  score: 44.8 bits;  conditional E-value: 1.3e-15
  Amidohydro_3 357 s....tpvkellnagvkvalgsDapvgpfdpwprigaavmrktrrggevlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvldadp 449
                   +    + v ++ +agv++  g+Da+ +p  p+p  ++   ++  +       +  +s  ++l+  T  +A+ +gl dr Gt+evG++ADlv+l+++p
    KKY21580.1 212 YtaarDSVTAMYKAGVPILVGTDANSEPDSPAPVRHGESFHRELEL----LVEAGMSTVDVLRGATVLAARYFGLKDR-GTIEVGKRADLVLLSQNP 303
                   3445578999*********************************744....58889**********************9.***************888 PP

  Amidohydro_3 450 ld.vdppelaearvrltvvdGrvvy 473
                   l+ + +    ++ +  ++++G+ v+
    KKY21580.1 304 LEdIRA----SKSILRVWCAGVEVV 324
                   751554....477999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.50
# Mc/sec: 1948.74
//
Query:       KKY21581.1  [L=662]
Description: putative retinal dehydrogenase 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-130  435.7   0.0   3.2e-106  355.6   0.0    2.0  2  Aldedh    Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.072   12.5   0.0       0.14   11.6   0.0    1.4  1  DUF1487   Protein of unknown function (DUF1487)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   1.5e-26   1.3e-22       2     129 ..       7     138 ..       6     139 .. 0.94
   2 !  355.6   0.0  3.5e-110  3.2e-106     147     461 ..     138     451 ..     137     452 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 1.5e-26
                 ET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH..HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHH CS
      Aldedh   2 veses.etievinPatgeviakvpaataedvdaavaaAkeafk..awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvl 97 
                 v+s++ +t++v+nP++++ i++v++a+++d+d+avaaA++af+   w+++  +eRa+i+ k+adl+e++  el++l+t+ +G+pl+ a    ++   ++
  KKY21581.1   7 VPSKAnKTLPVYNPVDNSFITDVHEAGESDIDDAVAAARAAFEsgPWSTMGKQERAKIMLKFADLVEAELPELSKLHTICMGQPLQFAILFSQQLPAMF 105
                 56666467***********************************877********************************************99******* PP

                 HHHHHHHHHHSEEEEEEC.TTEEEEEEEEE-SE CS
      Aldedh  98 ryyaelaeklegevlpss.egklalvrrePlGv 129
                 ryya++++k++ge+ + + +g + +v +eP+G+
  KKY21581.1 106 RYYAGYIDKISGETHTPDgDGCFKIVSYEPYGI 138
                 ************987774499**********97 PP

  == domain 2  score: 355.6 bits;  conditional E-value: 3.5e-110
                 HHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH-TTESEEEEES-HHHHHHHHHH.HHCTTSEEEEEE---EEEEE CS
      Aldedh 147 lapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealvehpevdkvsftGstevgrkiaka.aaknlkrvtlElGGknpliv 244
                 +apalaaGNt ++KP+e++pl +l+l +l+ eag+P+gv+n+vtg g ++g+ + +h +++k+sftG   vgr i+ a a++n+k v+lEl+Gk++++v
  KKY21581.1 138 IAPALAAGNTAIFKPSEKSPLACLALGRLVIEAGFPPGVINLVTGAG-TTGSLMSSHMGIQKLSFTGTAHVGRLIQIAaAKSNFKSVALELSGKSAALV 235
                 89*******************************************66.7***************************995569***************** PP

                 -TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT-...-BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE CS
      Aldedh 245 ledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakkl...kvgdpldedtdvGPliseaqlekvekyveeakeegaklllGger 340
                 ++daDl  a++ + + +++n+GQ+C a+s+llv+esi+ +f+e +++a+k+l    +gdp+d++t +GPl+++++++ v++y++ ak+eg++ll Gg  
  KKY21581.1 236 FDDADLPLAIAHCSQEMLLNTGQICAATSKLLVHESIAPKFIEGVKQAFKDLggpAMGDPMDKNTFLGPLADQKHFDMVMGYINGAKKEGIELLAGG-- 332
                 ***************************************************98889*****************************************.. PP

                 .SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--C CS
      Aldedh 341 eeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGv 439
                  e++  +g+f+ Pt++ n   +++i++e++FGPV+++++fkde+ea+++aNdteyGL++ ++t++ +ra+rv +rl++G ++iN  +  + +  pfgG+
  KKY21581.1 333 -ERKGTEGNFLLPTLFMNPGANSKIWKEDMFGPVAMITTFKDEDEALKLANDTEYGLSGRIYTSSYSRALRVGRRLQVGACGINGAAIPHYSW-PFGGW 429
                 .77899********************************************************************************8887777.***** PP

                 GGGEES-BSHHHHHHHTEEEEE CS
      Aldedh 440 kqSglGreggkegleeytevkt 461
                 k Sg+G+egg  gl+ey++vkt
  KKY21581.1 430 KLSGHGKEGGLLGLKEYLQVKT 451
                 *********************8 PP

>> DUF1487  Protein of unknown function (DUF1487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.6e-05      0.14       9      61 ..     234     288 ..     229     308 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.6e-05
     DUF1487   9 vifedgDlnsalealveslk..ePfaegavatvlveesirdefvervrsklkpls 61 
                 ++f+d+Dl  a+ +  +++       + a   +lv+esi+ +f+e v++ +k l 
  KKY21581.1 234 LVFDDADLPLAIAHCSQEMLlnTGQICAATSKLLVHESIAPKFIEGVKQAFKDLG 288
                 589******99988887765113445677788*******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.51
# Mc/sec: 3892.28
//
Query:       KKY21582.1  [L=437]
Description: putative tryptophanyl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-20   72.8   0.0    6.4e-20   71.7   0.0    1.5  1  tRNA-synt_1b  tRNA synthetases class I (W and Y)


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.0   3.5e-24   6.4e-20       3     286 ..     103     389 ..     101     395 .. 0.81

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 3.5e-24
                   HS--EEEEEEETSSS.-BGGGHHHHHHHHHHHH.TTSEEEEEEEHHHHHTTTTT-SSHHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEETHHHHTTH CS
  tRNA-synt_1b   3 erplrvysGidPTgk.lHlGylvplkklvelqk.aghevffliaDlhAiigdpskaeerklrkreevlenaikaqlakgldpekaevvlqsewlehl 97 
                    +p+ +y+G  P+++ +H+G++vp++   +lq+   + +++++ D + ++  p+     ++ ++++++++  k ++a+g+dp+k+ ++   e++   
    KKY21582.1 103 GQPFYLYTGRGPSSDsMHVGHTVPFEFTKWLQDvFDCPLVIMLTDDEKFMHTPR----ITIADSKRYTAANAKDIIAVGFDPNKTFIFSDFEYIGGA 195
                   57899***************************9889999999999999999999....455555555555569************************ PP

                   HHHHHHHHHHTTCBHHHHHHHHHCCHHCSSSC--BHHHHHHHHHHHHHHHHTCHS...............EEEEEGGGHHHHHHHHHHHHHHHHHST CS
  tRNA-synt_1b  98 elaellrdlgklgslnrmlqfksvkkrleegegislgeftYplLqaaDilllkad...............lvpgGsDQkqnielgrdlarrfnkkev 179
                    +  + ++  + +++n++         +  +++ ++gef +   q+a +++                   l p   DQ+  ++  r+ a+++++k  
    KKY21582.1 196 FYENICQMAKR-ITINSVKG------TFGFNDSNNIGEFHFCATQSASSFATSFPhifgpdplktrtipcLIPCAIDQDPYFRQCREHADKMKYK-- 283
                   99888777766.44444433......333333445555555555555555443333555555555566************************999.. PP

                   TSS-EEEEET-BBSTTSSS.BTTCETTCGC-BTTCCHHHHHHHHHHCHCSTTC...SHHHHHHHHHTHHHCHHHHHHHHCCSEEESSHHHHHHHHHC CS
  tRNA-synt_1b 180 fkkpegltvplltgldGek.KmSKSagnsaIfLddekesvkkkiqkavtdsde...evekllklktelsnelierleavsgkkpkreaeellaeevt 272
                     kp+ +   +l+ l+G   KmS S + saIf++d ++++k ki+k   + ++   e+++ l ++t+ +   +++l  +++ ++  ++ee+ +++++
    KKY21582.1 284 --KPSLIHSIFLPALQGPGsKMSASVDTSAIFMSDTPNQIKNKINKYAFSGGQdtaELQRQLGGRTKEDV-SFQYLTFFMEDDE--KLEEIRQDYES 375
                   ..998888889999998655************************865544444489**************.9********9999..9********** PP

                   CCCHHHHHHHHHHH CS
  tRNA-synt_1b 273 klvhggdlkkalae 286
                   +++  g+lkk   e
    KKY21582.1 376 GKMLTGELKKICIE 389
                   ********986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3034.54
//
Query:       KKY21583.1  [L=182]
Description: putative msf1 domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-10   39.7   0.1    1.9e-06   27.8   0.1    2.3  2  PRELI     PRELI-like family


Domain annotation for each model (and alignments):
>> PRELI  PRELI-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.1     1e-10   1.9e-06      58     100 ..      15      57 ..       7      72 .. 0.91
   2 !    9.6   0.0     4e-05      0.72     120     155 ..     125     160 ..     116     162 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1e-10
                 EEEEEEEEEEEEETTTTEEEEEEEESSSTTTEEEEEEEEEEEE CS
       PRELI  58 aktvyvleesvvdlkkrtlkletrNltfssllkveErvvYkph 100
                 a ++yv+e+s+vd k+  +k+e+rN++++ +l+v E  +++ +
  KKY21583.1  15 ASQSYVVEKSIVDVKEGWMKTESRNMEWTGILSVVESQTFQRQ 57 
                 5679**********************************99865 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 4e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       PRELI 120 slfglsskveklllkkfsenakkgkeglesvlkele 155
                 s+ g+++++e +++k+ ++ + +g++g+++vl+ l+
  KKY21583.1 125 STTGIQRTIEMVGVKRTKDALVNGRNGMNMVLDRLR 160
                 46899***************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.31s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 1135.14
//
Query:       KKY21584.1  [L=119]
Description: hypothetical protein UCRPC4_g03535 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       149  (0.00831056); expected 358.6 (0.02)
Passed bias filter:                      115  (0.00641419); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 808.42
//
Query:       KKY21585.1  [L=1192]
Description: putative serine threonine protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-71  239.5   0.0    6.1e-71  238.9   0.0    1.3  1  Pkinase          Protein kinase domain
    4.7e-42  143.3   0.0    8.8e-42  142.5   0.0    1.5  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
    1.1e-38  133.0   0.0    1.8e-38  132.3   0.0    1.3  1  Pkinase_Tyr      Protein tyrosine kinase
    3.3e-16   59.1   0.2      8e-16   57.9   0.2    1.7  1  UBA_2            Ubiquitin associated domain (UBA)
    2.9e-12   47.1   0.0    6.3e-06   26.6   0.0    2.5  2  AdenylateSensor  Adenylate sensor of SNF1-like protein kinase
    3.5e-10   39.7   0.0    6.8e-10   38.7   0.0    1.4  1  2-Hacid_dh       D-isomer specific 2-hydroxyacid dehydrogenas
    3.3e-06   26.6   0.0    9.6e-06   25.1   0.0    1.6  2  Kinase-like      Kinase-like
    0.00063   19.2   0.1     0.0013   18.2   0.1    1.4  1  Kdo              Lipopolysaccharide kinase (Kdo/WaaP) family
    0.00092   18.9   0.3     0.0018   17.9   0.3    1.4  1  RIO1             RIO1 family
     0.0064   15.4   0.3       0.01   14.7   0.3    1.2  1  YukC             WXG100 protein secretion system (Wss), prote
  ------ inclusion threshold ------
      0.019   14.0   0.2      0.032   13.2   0.2    1.4  1  Haspin_kinase    Haspin like kinase domain
      0.021   14.7   0.1      0.059   13.3   0.0    1.8  2  APH              Phosphotransferase enzyme family
       0.14   12.6   0.0       0.51   10.8   0.0    1.9  1  UDPG_MGDP_dh_C   UDP-glucose/GDP-mannose dehydrogenase family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.9   0.0   4.4e-74   6.1e-71       1     264 []      35     286 ..      35     286 .. 0.93

  Alignments for each domain:
  == domain 1  score: 238.9 bits;  conditional E-value: 4.4e-74
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 y+ ++ lGeGsfGkV  a +k tg++vA+K+i+++k   ++   +v rEi++l+ l+hp+i++ly v+++k ++++vley++ +el+d++ ++g l+e 
  KKY21585.1  35 YRMIKVLGEGSFGKVKLAQHKVTGQEVALKIISRRKLITRDMaGRVEREIQYLQLLRHPHIIKLYTVITTKLDIVMVLEYAP-QELFDYIVKHGRLNEY 132
                 667899***************************99987776669**************************************.55************** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHHHSS-S CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvDvWslGvilyelltgkpp 196
                 + +++++qi++++ey+H+++i+HrDlKpeN+L+d+++++Ki+DFGl++ ++ ++ l++ +g+++Y APEv++++ y +++vDvWs+Gvily +l g+ p
  KKY21585.1 133 KSRRMFQQIIAAVEYCHRHKIVHRDLKPENLLLDKDENVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYaGPEVDVWSCGVILYVFLVGRLP 231
                 ***********************************************************************999999********************** PP

                 TTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 197 fsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 f +e   + ++k          i      +++ +s ++  a++++k +l++ p +R+t+ e+ q++++
  KKY21585.1 232 FDDEFIPSLFKK----------I---AAGQFHVPSYLPAGATKMIKACLQVHPVHRITIPEIRQDEWF 286
                 **3333332222..........2...2348999**********************************8 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.5   0.0   6.4e-45   8.8e-42       3     178 .]     971    1151 ..     969    1151 .. 0.94

  Alignments for each domain:
  == domain 1  score: 142.5 bits;  conditional E-value: 6.4e-45
                    HHHHHHTTHHHHHHHHHTT...CC...HTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHH.HTT-EEEEESSSHHHHHCHHHHTCEEC.SHHHHH CS
  2-Hacid_dh_C    3 lllallrrlaeadeevreg...ew...ksekallgkelsgktvGiiGlGrIGqavakrlk.afgmkviaydrskkkeeeeeelgvelv.sleell 89  
                    +++++ r+la+ +++ r+g   +w   ++++++++++ + k +Gi+G+G+IG ++ak+++  fgm++++ d ++k+ e+ee+++++++ sl+ell
    KKY21585.1  971 HIISVFRNLAWSQAAARSGdaeQWldaHRNSTITSHNPRSKILGIVGMGNIGYTIAKKAHtCFGMRIYYQDLYRKSIEQEETVQATFCsSLDELL 1065
                    78999**********99995556699889999***************************989*************99999999998887****** PP

                    HH-SEEEE-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C   90 aesDivslhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178 
                      +D++++++p +    +l++ ++l+k+k+g+ l+N+aRG+l+de+aL++aLk g+i +a+lDvf++ep  +  +l++++nv+lt H a
    KKY21585.1 1066 GVADCIVIATPFSG--SKLVDTDRLKKFKRGSRLVNIARGTLIDEDALVDALKTGQIFAAGLDVFANEPHVHP-ELTKMNNVTLTCHNA 1151
                    ***********865..69*****************************************************77.9************87 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.3   0.0   1.3e-41   1.8e-38       3     257 ..      37     282 ..      35     283 .. 0.90

  Alignments for each domain:
  == domain 1  score: 132.3 bits;  conditional E-value: 1.3e-41
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE..STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl..keeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkeke 98 
                  + k lGeG+fGkV  ++ k     + ++Va+K++  ++  t++   ++ +e++ ++ l+hp+i+kl+ v+t +  +++v+ey+++ +L +++ k+   
   KKY21585.1  37 MIKVLGEGSFGKVKLAQHK----VTGQEVALKIIsrRKLITRDMAGRVEREIQYLQLLRHPHIIKLYTVITTKLDIVMVLEYAPQ-ELFDYIVKH--G 127
                  6799************999....8999*******4334456777889999********************************998.899999999..9 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEE.HHHHHHHHHHHH CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkft.sksDvWsfGvll 195
                  +l+  +  ++ +q+ +++ey +++k+vHrdl   N Ll++++ vki+DfGL++ + +d +   k+++  + ++ apE+++ k +   + DvWs Gv+l
   KKY21585.1 128 RLNEYKSRRMFQQIIAAVEYCHRHKIVHRDLKPENLLLDKDENVKIADFGLSNIM-TDGNFL-KTSC-GSPNYAAPEVISGKLYAgPEVDVWSCGVIL 222
                  99999***********************************************987.444444.4444.4569***********87369********** PP

                  HHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 196 wEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  + +f  g+ p+ +    ++++k+ +g + + p++ p+  ++++k c++ +p +R t+ e+++
   KKY21585.1 223 Y-VFLVGRLPFDDEFIPSLFKKIAAG-QFHVPSYLPAGATKMIKACLQVHPVHRITIPEIRQ 282
                  *.6777********999999999887.6899*************************999875 PP

>> UBA_2  Ubiquitin associated domain (UBA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.2   5.8e-19     8e-16       1      46 []     329     370 ..     329     370 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 5.8e-19
       UBA_2   1 IdedvvsaLsktMGYdkdeIieaLekaekskssneIkDAYlLmkEN 46 
                 I+e+vv +L ktMGY k+++ e L+k+e+s    ++kDAYl+++EN
  KKY21585.1 329 IHESVVGKLGKTMGYAKEDVKEILNKDEPS----AVKDAYLIIREN 370
                 9*****************************....***********9 PP

>> AdenylateSensor  Adenylate sensor of SNF1-like protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.6e-06    0.0036       1      31 [.     553     583 ..     553     595 .. 0.89
   2 !   26.6   0.0   4.6e-09   6.3e-06      58     103 ..     699     746 ..     690     750 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.6e-06
                      SEEESEEEES-HHHHHHHHHHHHHHTTEEE- CS
  AdenylateSensor   1 rWhfGirsrsypldvlgeiyralknlGaewa 31 
                      rW fGirsr  p + +  +y+a+   G  w 
       KKY21585.1 553 RWQFGIRSRNAPYEAMRCLYAAIMAQGGTWE 583
                      8**************************9996 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 4.6e-09
                      EEEEEEEEEEEETTEEEEEEEEEEEEESSSSS..TTTTTSSTTS---S CS
  AdenylateSensor  58 lmkleiqlfqlepnnylvdfkfdGwessssek..eetaeededevssa 103
                      ++++ iql+++e  ny+vdfk dG+++    +  ++t ++++++++sa
       KKY21585.1 699 FVYVDIQLYNIEGTNYMVDFKCDGYQNAVFISdgQSTGSKSSTRTTSA 746
                      56899*********************8653331244445555555554 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   4.9e-13   6.8e-10      51     134 .]     916    1183 ..     907    1183 .. 0.98

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 4.9e-13
                  BSHHHHHHH.TT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH............................................ CS
                  xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................ RF
  2-Hacid_dh   51 vtaevleal.pkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt............................................ 102 
                   ++e++  l p++k+ a ag+G+D  D+d ++ +Gil +n  ++s+e+vA+++                                            
  KKY21585.1  916 WDNELIPLLpPSVKIYASAGAGFDWADVDILADHGILYCNGAQASSEAVADMAifhiisvfrnlawsqaaarsgdaeqwldahrnstitshnprski 1012
                  5789999999*************************************************************************************** PP

                  ................................................................................................. CS
                  ................................................................................................. RF
  2-Hacid_dh  103 ................................................................................................. 102 
                                                                                                                   
  KKY21585.1 1013 lgivgmgnigytiakkahtcfgmriyyqdlyrksieqeetvqatfcssldellgvadciviatpfsgsklvdtdrlkkfkrgsrlvniargtlided 1109
                  ************************************************************************************************* PP

                  ..........................................T-BHHHHHHHHHHHHHHHHHHHTTCCGTTBCS CS
                  ..........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh  103 ..........................................aaTeeaqeniaeeaaenlvaflkgespanavn 134 
                                                            +   +++    + a+en+ ++l+g++p ++vn
  KKY21585.1 1110 alvdalktgqifaagldvfanephvhpeltkmnnvtltchnaGGAMDTMIGFERLAMENVQRVLTGQDPLTPVN 1183
                  *****************************************99999************************9998 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   1.7e+03      17      54 ..      38      75 ..      32     117 .. 0.72
   2 !   25.1   0.0   6.9e-09   9.6e-06     129     252 ..     117     234 ..      68     243 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
  Kinase-like 17 gellkkgdrsvvfevkdqetgeplavkvfllpseaskk 54
                  ++l++g +++v +++ + tg+++a+k+ +  +   + 
   KKY21585.1 38 IKVLGEGSFGKVKLAQHKVTGQEVALKIISRRKLITRD 75
                 5789999999**************99987766555555 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 6.9e-09
  Kinase-like 129 kvlqkrsethkkl.etiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggf..taLvragtkvvlsevekgfaPpEllgsrggytrkn 223
                  ++l    ++h +l e+ +r +   q+i  + + + + +vh +++++nllld++  +++ +f  ++++++g+  + s     +a pE+++         
   KKY21585.1 117 QELFDYIVKHGRLnEYKSRRMF-QQIIAAVEYCHRHKIVHRDLKPENLLLDKDENVKIADFglSNIMTDGNFLKTSCGSPNYAAPEVISG-------- 205
                  4555555566666145566666.99**********************************9844689******9999999*********98........ PP

  Kinase-like 224 ktkmthkldaWqlGlviyriwclklPltl 252
                  k+    ++d+W  G+  y      lP++ 
   KKY21585.1 206 KLYAGPEVDVWSCGVILYVFLVGRLPFDD 234
                  4556789*******************986 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   9.1e-07    0.0013     103     163 ..     117     173 ..     107     185 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 9.1e-07
         Kdo 103 qdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwl 163
                 q+L d++ k+ +l+e + r++++++ ++++  hr ++ H+dl + n+ll+++e    ++ +
  KKY21585.1 117 QELFDYIVKHGRLNEYKSRRMFQQIIAAVEYCHRHKIVHRDLKPENLLLDKDE----NVKI 173
                 67888999988899*************************************98....4444 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.3   1.3e-06    0.0018      54     150 ..      79     177 ..      37     185 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.3e-06
                 HHHHHHHHHHHHHHTT.--S--EEEEETT.EEEEE--EETTEEGGBHHHCG.-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE-- CS
        RIO1  54 waekEfrnLkrleeag.vpvPkpielkrh.vlvmefigedgvaapklkdve.eeeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviID 148
                  +e+E+++L+ l++ + ++  ++i+ k + v+v+e+   +++  + +k+ + +e + ++++++++++++    ++++vH DL   N+l+d+d +v i D
  KKY21585.1  79 RVEREIQYLQLLRHPHiIKLYTVITTKLDiVMVLEYAP-QELFDYIVKHGRlNEYKSRRMFQQIIAAVEYCH-RHKIVHRDLKPENLLLDKDeNVKIAD 175
                 479999**999998776899999999987245888888.67777778888867999**********877666.*******************8888888 PP

                 GT CS
        RIO1 149 vs 150
                 ++
  KKY21585.1 176 FG 177
                 85 PP

>> YukC  WXG100 protein secretion system (Wss), protein YukC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.3   7.3e-06      0.01      37     107 ..     111     183 ..      78     190 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.3e-06
                 EEEE---TTSEEGGGGGGS-HHHHHHHHHH.GGGGGGGG.GSSEE---SGGGEEE-TTS-EEES--EETTTBS CS
        YukC  37 kityqlekkllsfeeikkkekkeklrlaln.ikaleell.ssrltlilhPeNlvfdknlepkilhrgvkeslp 107
                 +++y +++      +  + ++++  r+ ++ i+a+e  + ++ ++  l+PeNl++dk+ ++ki+  g+ +++ 
  KKY21585.1 111 VLEYAPQELFDYIVKHGRLNEYKSRRMFQQiIAAVEYCHrHKIVHRDLKPENLLLDKDENVKIADFGLSNIMT 183
                 3455555555444444444454444455555999997551566899***********************9986 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   2.3e-05     0.032     182     257 ..     104     182 ..      29     191 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.3e-05
  Haspin_kinase 182 qqlflvlllkdkGtdLeev.....klkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRle 257
                    ++l +v++l+++ ++L        +l+++k   ++f qi++ +     + +  HRdL+ +n L+dk  nv + d+ ls + 
     KKY21585.1 104 TKLDIVMVLEYAPQELFDYivkhgRLNEYK-SRRMFQQIIAAVEYC-HRHKIVHRDLKPENLLLDKDENVKIADFGLSNIM 182
                    556666666666666544433222344443.356777766665544.578999**********************999875 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.3e-05     0.059     166     196 ..     151     179 ..     114     183 .. 0.83
   2 ?   -3.4   0.0       5.4   7.5e+03      88     121 ..     398     430 ..     394     526 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.3e-05
                 EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 166 tvllHgDlhpgNllvdpddgrvtGviDfeda 196
                 + ++H+Dl+p Nll+d+d++    + Df+++
  KKY21585.1 151 HKIVHRDLKPENLLLDKDENVK--IADFGLS 179
                 669*************777776..8999876 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.4
                 HHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCH CS
         APH  88 aaqlpellealgeflaalhqvdpaalpladflaq 121
                 +a +++++ + ++f a+ ++  ++  p++ +++ 
  KKY21585.1 398 PATRQAIYKDQARFAADQQEG-KPLGPFRKPSEA 430
                 566777777777777765444.554555533332 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00037      0.51      30      91 ..    1034    1092 ..    1025    1105 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00037
                      TSEEEEE-SSTHHCCCCHHGGBTCCEEES-CHHHHTT-SEEEE-S--GGGGGS-HHHHHHCC CS
  UDPG_MGDP_dh_C   30 gaevkiyDPkvkeeaveaeleekgvevvdsleealkgadaiviltehdefkeldlaklkelm 91  
                      g+++ + D + k+ ++e+     ++++++sl+e l  ad+ivi+t+ +  k +d ++lk+  
      KKY21585.1 1034 GMRIYYQDLYRKSIEQEE---TVQATFCSSLDELLGVADCIVIATPFSGSKLVDTDRLKKFK 1092
                      556667777777777666...5689*********************9999999999998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.92u 0.29s 00:00:01.21 Elapsed: 00:00:00.47
# Mc/sec: 7621.21
//
Query:       KKY21586.1  [L=476]
Description: putative fad dependent [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-38  130.7   0.0    2.2e-21   75.9   0.0    3.1  3  FMO-like       Flavin-binding monooxygenase-like
    2.1e-19   69.9   0.0    2.4e-14   53.3   0.0    2.3  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    4.2e-13   49.2   0.0    2.5e-12   46.7   0.0    2.1  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.6e-12   47.7   1.4    1.5e-05   24.7   0.8    3.0  3  DAO            FAD dependent oxidoreductase
    5.1e-09   35.7   0.2    4.3e-06   26.1   0.0    3.0  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    5.5e-08   32.5   1.4     0.0019   17.5   0.1    3.0  3  Amino_oxidase  Flavin containing amine oxidoreductase
    7.9e-08   32.4   0.1    1.8e-07   31.3   0.1    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    9.2e-08   32.2   3.6    1.6e-05   24.9   1.9    3.3  2  NAD_binding_9  FAD-NAD(P)-binding
    1.9e-07   31.5   1.7    0.00019   21.9   0.7    3.4  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    3.5e-06   26.4   0.8    0.00018   20.8   1.0    2.1  2  FAD_binding_2  FAD binding domain
    6.4e-06   25.1   0.5     0.0011   17.8   0.5    2.2  2  HI0933_like    HI0933-like protein
    4.7e-05   22.9   0.0    7.2e-05   22.3   0.0    1.3  1  FAD_oxidored   FAD dependent oxidoreductase
    8.1e-05   22.0   0.2    0.00016   21.0   0.2    1.4  1  Thi4           Thi4 family
    0.00097   18.5   0.3      0.034   13.4   0.2    2.2  2  FAD_binding_3  FAD binding domain
     0.0074   15.6   0.1      0.015   14.6   0.1    1.5  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.032   14.4   0.0      0.084   13.0   0.0    1.7  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
      0.043   12.9   3.0      0.049   12.7   1.8    1.7  2  GIDA           Glucose inhibited division protein A
      0.067   13.1   0.3       0.12   12.3   0.3    1.3  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
      0.098   12.7   0.0       0.97    9.5   0.0    2.4  2  Shikimate_DH   Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.4e-08   1.3e-05       3      45 ..       7      49 ..       6      53 .. 0.94
   2 !   75.9   0.0   2.3e-24   2.2e-21      60     217 ..      94     256 ..      84     258 .. 0.81
   3 !   27.2   0.0   1.4e-09   1.3e-06     311     443 ..     295     436 ..     283     444 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.4e-08
    FMO-like  3 kvaviGaGvsGlasikccleegleptcfersddiGGlwrfken 45
                ++aviGaGvsG+++      egl  t fer+   GG+w f+ +
  KKY21586.1  7 HIAVIGAGVSGISAAAHLKSEGLRVTVFERASVSGGVWVFDSR 49
                59*************************************9865 PP

  == domain 2  score: 75.9 bits;  conditional E-value: 2.3e-24
    FMO-like  60 nsskemscfsdfplpedypnflhnsklleylklfakefdllkyiqfkttvcsvkkrpdfstsGqwevvtek......egkkesavfdavmvctGhhvnp 152
                 n+  e+   s    + + p f  ++ l +yl+  a + ++   i ++t v s+ k ++    G+w++ t++      ++  +s  fdav+v tGh+  p
  KKY21586.1  94 NVPTELLELSLNKWEPNTPTFTTHETLRKYLQDTAVRTGVEEEILYNTRVESLSKDNEL---GRWNIKTTTwhsatnNKTAKSWTFDAVVVATGHYHAP 189
                 555566666666666788************************************98875...55655443211111133456789************** PP

    FMO-like 153 hlplesfpGiekfk....GqyfhsrdykepevfkgkrvlviGlGnsggdiavelsrtaeqvllstrsGs 217
                 ++p  s pG+ ++k     ++ hs+ y++p++f++  vl+iG   s++dia el   a+++  str+G 
  KKY21586.1 190 NVP--SIPGLAAWKdafpSRIQHSKRYRNPKGFEDTNVLLIGGSTSATDIAKELGPIAKRIWQSTRNGP 256
                 **9..89**977652222789**********************************************95 PP

  == domain 3  score: 27.2 bits;  conditional E-value: 1.4e-09
    FMO-like 311 ifedgtveedidvvifatGytfafpfl......eeslvkveknkvslykkvfpanlekptlai.......iGliqplGsilptvelqarwavrvlkGlk 396
                  + dg+v e++d vi +tGy f+ pfl      ++   k  ++kv +    +  nl++  + i       +G +  + + ++  e qa  ++  l G +
  KKY21586.1 295 TLVDGSVLENVDRVIVCTGYQFSLPFLsaeyhrDDVAAKDADDKVLITDGTMLHNLHRDIFYIpdpslifVG-VPFRIATFSLFEFQAIAVAAFLSGQA 392
                 5679**********************955444445667889999*999999999999966544222210044.34567899****************** PP

    FMO-like 397 klpsekelleeitekkekkakrfgesksktiqtdyiayldelaalig 443
                 +lps+ e+ +e  ++ ++k    g ++ + +  + ++y+ +l++ ++
  KKY21586.1 393 TLPSQAEMRAEYDRRLKEK--GLG-KTFHSLMGKDVEYVADLMEWVN 436
                 **********999884433..233.4555666666777777766665 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.9e-05     0.017       2      34 ..      10      41 ..       8      82 .. 0.75
   2 !   53.3   0.0   2.5e-17   2.4e-14      79     294 ..     116     346 ..      97     357 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.9e-05
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilEkgnign 34
                 +iGaG  G++aa +lk  gl ++++ E+++++ 
   KKY21586.1 10 VIGAGVSGISAAAHLKSEGL-RVTVFERASVSG 41
                 89999999999999999999.799999998765 PP

  == domain 2  score: 53.3 bits;  conditional E-value: 2.5e-17
  Pyr_redox_3  79 srkealeYlrevaksfel..piklfeeVesvkkedeg..fevetsk.....e.....tyeAkkviiAtGefdkPnklnipGeek.......lvkhysk 155
                  + +++ +Yl+  a +  +  +i ++++Ves++k++e    +++t++     +     + + + v++AtG ++ Pn+++ipG            +h++ 
   KKY21586.1 116 THETLRKYLQDTAVRTGVeeEILYNTRVESLSKDNELgrWNIKTTTwhsatNnktakSWTFDAVVVATGHYHAPNVPSIPGLAAwkdafpsRIQHSKR 213
                  445556677665555444226888899999988654334888876522211111111334467******************76322233224569999 PP

  Pyr_redox_3 156 vkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgk 253
                  +++++ +++++v+ iGg+ Sa D+A el    +++   tr+ + ++    p  +l p + +r++e+ + + ++   na+ ++i       +v+  dg+
   KKY21586.1 214 YRNPKGFEDTNVLLIGGSTSATDIAKELGPIAKRIWQSTRNGPFDH----PAFEL-PKNASRVAEIASFGPLQC-NNASSTAIPG-----TVTLVDGS 300
                  ****************************************997655....44444.9********988787774.4557777775.....4888999* PP

  Pyr_redox_3 254 kvevkddvvlatGykpdlsflkk.....slfeldedgrpvlteete 294
                   +e+ d+v+++tGy+ +l fl++      + ++d+d ++++t+ t+
   KKY21586.1 301 VLENVDRVIVCTGYQFSLPFLSAeyhrdDVAAKDADDKVLITDGTM 346
                  *********************9755444444555555555555555 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   2.6e-15   2.5e-12       2     245 ..       7     322 ..       6     360 .. 0.65

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 2.6e-15
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCHHHCSHHH........HCHHHHHHHHHHHHH.............................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxx........xxxxxxxxxxxxxxx.............................. RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve....legtclnggcll........skallgvaedaeias.............................. 57 
                  +++viG+G+ G++aa +l+  g++vt++e    ++g ++++  ++        ++ ++++a                                     
   KKY21586.1   7 HIAVIGAGVSGISAAAHLKSEGLRVTVFErasvSGGVWVFDSRVPfepaypseKPSVAEFA------Fhddkesrdpailhsapgpcyeglknnvpte 98 
                  79**************************888884444444444443222222222333333......034444588899******************* PP

                  ...................HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC........................TCEEEEEESEEEE---E..E CS
                  ...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxx..x RF
  Pyr_redox_2  58 ...................evvkklnqgielllgeevvkidpgkkkvklekkke........................gdeekiaydklvlAtGs..s 110
                                     e ++k+ q+  +++g        ++ ++ +++++e                        +  ++ ++d++v+AtG    
   KKY21586.1  99 llelslnkwepntptftthETLRKYLQDTAVRTG-------VEE-EILYNTRVEslskdnelgrwniktttwhsatnnKTAKSWTFDAVVVATGHyhA 188
                  ***********98888777444444444444444.......222.2222222222333334556666667778888878888999*********6669 PP

                  E-BCTCTTC.TTBEECCSECHHHHHHCCSS-T..SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-..HHHHHHHHHHHHHTTEEEEES CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx..xxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 111 prdlgipGvaenvgklvrtldsaealklkllp..krivvvGgGyiGvElAaalaklgkevtlveardrll.rald..kelsaaleealekeGvevklg 203
                  p+ + ipG+a     + + +++ ++++  +     +++ +Gg+  ++++A +l  ++k++    ++  +  +a++  k++s+ +e a       ++++
   KKY21586.1 189 PNVPSIPGLAAWKDAFPSRIQHSKRYRNPKGFedTNVLLIGGSTSATDIAKELGPIAKRIWQSTRNGPFDhPAFElpKNASRVAEIASFG---PLQCN 283
                  99*******5444444455555555555544458999****************9999976633333333344443314444444443333...45555 PP

                  CEEEEEEETTEEEEEEETTSCE.EEESEEEE-S-EEES-HHCS CS
                  xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 204 tsvkeidgngeklevvledgee.idadlvvvavGvrpstelle 245
                  +   ++++ +    v+l dg++ +++d v+v++G++ s ++l 
   KKY21586.1 284 NASSTAIPGT----VTLVDGSVlENVDRVIVCTGYQFSLPFLS 322
                  5555666555....56777777678999999999988877764 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.8   1.6e-08   1.5e-05       1      33 [.       7      41 ..       7      49 .. 0.89
   2 !   18.6   0.0   1.2e-06    0.0012     109     204 ..      93     187 ..      55     214 .. 0.69
   3 ?    1.0   0.0      0.26   2.5e+02     179     205 ..     294     317 ..     280     372 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.6e-08
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiag 33
                ++++iG+G+ G+s+A +L  +g  Vt++e+++  g
  KKY21586.1  7 HIAVIGAGVSGISAAAHLKSEGlrVTVFERASVSG 41
                79****************7779********95544 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1.2e-06
                 TTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHH.HHHHHHHHHTT-..EEEESECEEEEEEEE..TCEEEEE......EECTEEEE..... CS
         DAO 109 agldaelldaeevrelepalpgllgalfypdtgqvdpaklt.aalaraaealGv..eilegtevtgleeed..gkvwgve......rttpgend..... 191
                 +++++ell+ + ++++ep            +t ++ +++ + ++l+++a + Gv  eil++t+v++l++++  g+ w+++        t+         
  KKY21586.1  93 NNVPTELLELS-LNKWEP------------NTPTFTTHETLrKYLQDTAVRTGVeeEILYNTRVESLSKDNelGR-WNIKtttwhsA-TN---Nktaks 173
                 55566666555.666665............3333444444405556669****9999**********77667766.88876666642.22...022335 PP

                 .EEEEEEE--GGGH CS
         DAO 192 .aadavVnaaGaws 204
                  ++davV+a+G++ 
  KKY21586.1 174 wTFDAVVVATGHYH 187
                 67799*******94 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.26
                 EEEEEEECTEEE.EEEEEEEE--GGGHH CS
         DAO 179 vwgverttpgen.daadavVnaaGawsd 205
                 v+ v +   g++ + +d v++++G + +
  KKY21586.1 294 VTLV-D---GSVlENVDRVIVCTGYQFS 317
                 3333.2...556566899******9854 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.012        12       5      36 ..       8      37 ..       5      44 .. 0.84
   2 !   26.1   0.0   4.6e-09   4.3e-06      96     210 ..     118     241 ..     104     253 .. 0.77
   3 ?    0.7   0.0      0.24   2.2e+02     329     342 .]     303     316 ..     295     316 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.012
  K_oxygenase  5 ligiGiGpsnLsLailleevkkelkalflerq 36
                 ++ iG+G+s +s a++l++    l++ ++er 
   KKY21586.1  8 IAVIGAGVSGISAAAHLKSEG--LRVTVFERA 37
                 678999999999999999888..999999986 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 4.6e-09
  K_oxygenase  96 kefedYlrWva..sqleeqvrfgeeveevepdeeeee...elltveskdaegeeeelearnlvlgvG..tepkiPev...lekle..gkervvHssey 181
                  +   +Yl+  a    +ee++ ++++ve+++ d+e ++   +  t +s++++ ++++++  ++v+++G    p++P++   ++  +    +r+ Hs++y
   KKY21586.1 118 ETLRKYLQDTAvrTGVEEEILYNTRVESLSKDNELGRwniKTTTWHSATNNKTAKSWTFDAVVVATGhyHAPNVPSIpglAA-WKdaFPSRIQHSKRY 214
                  5556788765411668899**************98776455566677678888999***********775666665422132.2223348******** PP

  K_oxygenase 182 lerkeellakkriaVvGsGqSaaeifedl 210
                   + k    +  +++ +G+  Sa +i+++l
   KKY21586.1 215 RNPK--GFEDTNVLLIGGSTSATDIAKEL 241
                  9998..7999***************9987 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.24
  K_oxygenase 329 levdavvlATGYrr 342
                  ++vd+v+++TGY++
   KKY21586.1 303 ENVDRVIVCTGYQF 316
                  689*********85 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   2.1e-06    0.0019       1      28 [.      15      42 ..      15      49 .. 0.91
   2 !   11.3   0.0   0.00016      0.16     222     277 ..     134     200 ..     117     211 .. 0.75
   3 ?    1.0   0.1      0.22     2e+02     242     260 ..     293     312 ..     269     315 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.1e-06
                   HHHHHHHHHHHHTTEEEEEEESSSSSBT CS
  Amino_oxidase  1 laGLaaArqLlsaGfdVtvlEardrvGG 28
                   ++G++aA +L+s G++Vtv+E  +  GG
     KKY21586.1 15 VSGISAAAHLKSEGLRVTVFERASVSGG 42
                   69********************999999 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00016
                    TEEEETSEEEEEEEEETTC....EEEEETTSTEE.......EESEEEE-S-HHHHHSSEEESCCSHH CS
  Amino_oxidase 222 gldirlntrVkeikregdg....vtvtledgevv.......eaDaVvvTvplgvlkailfsPplpde 277
                    + +i++ntrV +++++++     +++t++++ ++       ++DaVvv++  +++ ++   P+l  +
     KKY21586.1 134 EEEILYNTRVESLSKDNELgrwnIKTTTWHSATNnktakswTFDAVVVATGHYHAPNVPSIPGLAAW 200
                    579************55555655666666444446778999**********9999855555566445 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.22
                    EEEETTSTEE.EESEEEE-S CS
  Amino_oxidase 242 tvtledgevv.eaDaVvvTv 260
                    tvtl+dg+v+ ++D+V+v++
     KKY21586.1 293 TVTLVDGSVLeNVDRVIVCT 312
                    899**************986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.1   1.9e-10   1.8e-07       1      34 [.      10      43 ..      10      54 .. 0.95

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 1.9e-10
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGG CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGr 34
                   ++GaG+sG +aA++L+ +g++v+++e+++  GG 
     KKY21586.1 10 VIGAGVSGISAAAHLKSEGLRVTVFERASVSGGV 43
                   8*****************************9995 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   1.9   1.7e-08   1.6e-05       1     155 [.       9     185 ..       9     186 .. 0.62
   2 ?    3.1   0.0     0.091        86     134     155 ..     292     314 ..     279     315 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.7e-08
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtdq....seelllNvpasemslftddp................ptfaeWlrer 76 
                    a++GaG++G++++++L ++      l++t+f++++   g+vw  d     ++++    p+ +  +f+dd+                +     l+++
     KKY21586.1   9 AVIGAGVSGISAAAHLKSE-----GLRVTVFERASVS-GGVWVFDSrvpfEPAYPSEKPSVAEFAFHDDKesrdpailhsapgpcyE----GLKNN 94 
                    89**************988.....6********8886.6777666511224444444444444456777778887777777753331....22222 PP

  NAD_binding_9  77 ga...lee....aeeldpddfvpRalyGrYlrdlfeellarlpegvtvevhraevvdleera.........dgqavlladg..aslaadaVvLAlG 154
                         l e    + e +  +f +   + +Yl+d++ +    ++e++   +++++v++l++++         ++++  ++++  +s+++daVv+A+G
     KKY21586.1  95 VPtelL-ElslnKWEPNTPTFTTHETLRKYLQDTAVRTG--VEEEI---LYNTRVESLSKDNelgrwniktTTWHSATNNKtaKSWTFDAVVVATG 184
                    223431.1343334555668************9987755..44433...6677888777766433222211223222222222569********** PP

  NAD_binding_9 155 h 155
                    h
     KKY21586.1 185 H 185
                    9 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.091
  NAD_binding_9 134 qavlladgasl.aadaVvLAlGh 155
                     +v+l dg+ l  +d+V++++G 
     KKY21586.1 292 GTVTLVDGSVLeNVDRVIVCTGY 314
                    4799999999889*********7 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.7   2.1e-07   0.00019       1      32 [.       7      38 ..       7      47 .. 0.95
   2 ?    3.5   0.0      0.11     1e+02      40      71 ..     118     151 ..     112     160 .. 0.84
   3 ?    2.7   0.0      0.21   1.9e+02       2      24 ..     225     247 ..     224     254 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.1e-07
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversd 32
                +++v+G+G++g+ +A+ l+  g +Vtv+er++
  KKY21586.1  7 HIAVIGAGVSGISAAAHLKSEGLRVTVFERAS 38
                79****************************86 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHTTE..EEECSEEEEEEEEETT CS
   Pyr_redox  40 eeaskilqeklekngi..evllntkveeiegsed 71 
                 e+++k+lq+   + g+  e+l+nt+ve++ ++++
  KKY21586.1 118 ETLRKYLQDTAVRTGVeeEILYNTRVESLSKDNE 151
                 6789999999999999445**********98875 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.21
                 EEEECSSHHHHHHHHHHHHTTSE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkk 24 
                 v+ +Gg++++ + A++l  ++k+
  KKY21586.1 225 VLLIGGSTSATDIAKELGPIAKR 247
                 889*************9888876 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   1.0   1.9e-07   0.00018       2      36 ..       8      42 ..       7      50 .. 0.87
   2 ?    3.3   0.0     0.037        35     135     204 ..     112     188 ..      95     215 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.9e-07
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgg 36
                   + ViG+G++G +AA+ ++ +Gl+v+v e +++ gg
     KKY21586.1  8 IAVIGAGVSGISAAAHLKSEGLRVTVFERASVSGG 42
                   68***************************999554 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.037
                    ....HHHHHHHHHHHHHHTCT..EEEEESEEEEEEEECTT....EEEEEEEEETTTTCEEEEEES.EEEE-----GG CS
  FAD_binding_2 135 etlvtghallarlvesarkag..vdfqerteadeLivedg....rvtGavvenpesgrevrirak.avvlatgGfgr 204
                     t++t+ +l + l ++a + g   +++ +t++++L  +++     + + + +  ++ ++ ++    avv+atg +++
     KKY21586.1 112 PTFTTHETLRKYLQDTAVRTGveEEILYNTRVESLSKDNElgrwNIKTTTWHSATNNKTAKSWTFdAVVVATGHYHA 188
                    4667777888888888888887789**********9988899998888888877777766666666*******9997 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.5   1.1e-06    0.0011       2      33 ..       7      38 ..       6      42 .. 0.92
   2 !    5.3   0.0    0.0073       6.9     128     188 ..     139     209 ..     108     215 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.1e-06
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekak 33
                 +++viG+G +G+ aA++++++g rV+++e+a+
   KKY21586.1  7 HIAVIGAGVSGISAAAHLKSEGLRVTVFERAS 38
                 689**************************986 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0073
                  -S--EEEEECETT.E.EEEEE..........TTEEEEESEEEE----SS-GGGT--SHHHHHHHHTT--EE CS
  HI0933_like 128 letevksvekeed.gkfrvktk.........seeeleadklvlAtGGlSiPklGstgkgyklaeqfghtiv 188
                  ++t+v+s++k+++ g+ ++kt+         ++++++ d++v+AtG   +P++ s +    + ++f  +i 
   KKY21586.1 139 YNTRVESLSKDNElGRWNIKTTtwhsatnnkTAKSWTFDAVVVATGHYHAPNVPSIPGLAAWKDAFPSRIQ 209
                  55555555433321233333322333333338899*****************9999999988888877776 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   7.6e-08   7.2e-05       2     123 ..       8     160 ..       7     184 .. 0.68

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 7.6e-08
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignkaee..................qvvtgiareflerlrqrggarlkkrsk 80 
                   + V+G+g++G+ AA   + +G +v + e+  v GG      + +++  + +e                  ++ +   +  +e l+++          
    KKY21586.1   8 IAVIGAGVSGISAAAHLKSEGLRVTVFERASVSGGVWVFDSRVPFEPAYPSEkpsvaefafhddkesrdpAILHSAPGPCYEGLKNNVP-------- 96 
                   78*********************************************885545555555555556666665555566666666655222........ PP

  FAD_oxidored  81 wn................tfepevakavleeml..aeagvtvllntrlvevekeg..kr..iesv 123
                    +                +  +e++++ l++    ++ + ++l+ntr+++  k++  +r  i+  
    KKY21586.1  97 -TellelslnkwepntptFTTHETLRKYLQDTAvrTGVEEEILYNTRVESLSKDNelGRwnIKTT 160
                   .0222333333334466567788888888888855445557999999999999864422333333 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.2   1.7e-07   0.00016      20      59 ..       8      45 ..       5      49 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.7e-07
                EEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTT CS
        Thi4 20 vvivGaGssGLtaayylakkpdlkvailersvspGGGawl 59
                ++++GaG sG++aa  l  + +l+v+++er  s+ GG+w 
  KKY21586.1  8 IAVIGAGVSGISAAAHLKSE-GLRVTVFERA-SVSGGVWV 45
                89***************999.********85.88899995 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.2   3.7e-05     0.034       4      34 ..       8      38 ..       6      40 .. 0.93
   2 ?    2.9   0.0     0.055        51      93     136 ..     106     151 ..      74     167 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.7e-05
                   EEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  4 VlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                   ++++GaG +G+++a  L++ G rv++ e+ s
     KKY21586.1  8 IAVIGAGVSGISAAAHLKSEGLRVTVFERAS 38
                   689*************************976 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.055
                    HHCST-CEE--HHHHHHHHHHHHHHHT..EEETCSEEEECCEECCC CS
  FAD_binding_3  93 esspervtvypqteleriLvehaeerg..lqvrfktevesleqdee 136
                    + +p+++t    + l ++L + a+++g   ++  +t+vesl +d+e
     KKY21586.1 106 KWEPNTPTFTTHETLRKYLQDTAVRTGveEEILYNTRVESLSKDNE 151
                    57788999999999*************6557999*******99986 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.6e-05     0.015      29      59 ..       6      36 ..       3      40 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.6e-05
                 -EEEEESTSHHHHHHHHHHHHTT-EEEEEES CS
  AlaDh_PNT_C 29 akvlviGgGvaGlqAiatakglgakVtvlDv 59
                  ++ viG+Gv G++A+a  k+ g +Vtv++ 
   KKY21586.1  6 PHIAVIGAGVSGISAAAHLKSEGLRVTVFER 36
                 5799************************986 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     9e-05     0.084       2      31 ..       8      37 ..       7      47 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9e-05
                   EEEE--SHHHHHHHHHHHHTT-EEEEE-SS CS
  NAD_binding_2  2 igfiGlGvMGsnmalnllkagykvavynrt 31
                   i++iG Gv G + a +l+++g +v+v++r 
     KKY21586.1  8 IAVIGAGVSGISAAAHLKSEGLRVTVFERA 37
                   9**************************996 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.8   5.2e-05     0.049       2      28 ..       8      34 ..       7      45 .. 0.90
   2 ?   -3.0   0.0         3   2.8e+03     136     152 ..     171     187 ..     139     191 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.2e-05
                EEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLi 28
                + ViG+G +G+ AA++++  G++v+ +
  KKY21586.1  8 IAVIGAGVSGISAAAHLKSEGLRVTVF 34
                78**********************987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3
                 S-EEEECEEEE--TT-B CS
        GIDA 136 getikakavviatGtfl 152
                  +  + +avv+atG + 
  KKY21586.1 171 AKSWTFDAVVVATGHYH 187
                 44455569999999875 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   0.00012      0.12       1      31 [.       7      37 ..       7      40 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S- CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdis 31
                ++aviGaG+ G + aa + s+gl+V++++++
  KKY21586.1  7 HIAVIGAGVSGISAAAHLKSEGLRVTVFERA 37
                59*************************9875 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0     0.001      0.97      14      45 ..       7      37 ..       5      40 .. 0.93
   2 ?   -0.6   0.0       1.3   1.2e+03       9      31 ..     219     241 ..     213     248 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.001
                  EEEEES-SHHHHHHHHHHHCCT-CEEEEEESS CS
  Shikimate_DH 14 kvlliGaGemaelvakhLlakgvkkvvvaNRt 45
                  ++ +iGaG  +  +a hL ++g++ v+v+ R 
    KKY21586.1  7 HIAVIGAGVSGISAAAHLKSEGLR-VTVFERA 37
                  588********************9.***9996 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.3
                   ..TT-EEEEES-SHHHHHHHHHH CS
  Shikimate_DH   9 slkekkvlliGaGemaelvakhL 31 
                    +++ +vlliG    a+ +ak L
    KKY21586.1 219 GFEDTNVLLIGGSTSATDIAKEL 241
                   57899******999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 3202.28
//
Query:       KKY21587.1  [L=367]
Description: putative glutamine synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-16   60.8   0.0    1.7e-11   43.8   0.0    2.1  2  Gln-synt_C  Glutamine synthetase, catalytic domain
    6.2e-14   51.5   0.0    1.3e-13   50.5   0.0    1.5  1  Gln-synt_N  Glutamine synthetase, beta-Grasp domain


Domain annotation for each model (and alignments):
>> Gln-synt_C  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   1.8e-15   1.7e-11      22     155 ..     127     255 ..     111     270 .. 0.81
   2 !   15.0   0.0   1.1e-06    0.0095     215     254 ..     305     346 ..     293     355 .. 0.84

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 1.8e-15
                 EEEEEEEEEEEESEECCCESSEEEEEEE.TB...B.TSS-TTBHCCCC..CTCCHHHHHHHHHHHTT--EECCEEECCCTEEEEEE--EECHHHHHHHH CS
  Gln-synt_C  22 vvvgpElEFflfdkeedkeasksllevdseekgrpaekggyfsvapvd..eaedlrreivealealgieveashhEvatgQvEinlkfadalkaaDnvv 118
                   +g E E+ l+  + +            +++g p  +g y+    ++    +d+++  ++a+  +gi++  + +Ev ++Q E ++ +   ++  D++ 
  KKY21587.1 127 TWFGLEQEYTLLGADGWP--------YGWPKGGYPGPQGPYYCGVGTNrvYCRDIVEAHYKACLYAGINISGINAEVMPAQWEYQVGPCLGIELGDQLW 217
                 567777777777766662........233345555666665555444423568999999**************************************** PP

                 HHHHHHHHHHHHTT-EEE-SSSSSTTS.---BEEEEEE CS
  Gln-synt_C 119 tfKrvvkevArkhgltatFmpKplegd.nGsgmHvhlS 155
                 + + + + + ++ g  +tF pKp++gd nG g+H+++S
  KKY21587.1 218 MSRFLLNRISEEFGAVVTFNPKPIPGDwNGAGLHTNVS 255
                 ************************98669********9 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.1e-06
                 BEEEESS-TTCSEEEE-..TSGGCSTEEEECEBTTS-HHHHH CS
  Gln-synt_C 215 alawgarNRsallRipa..skekakrvElRlpdasaNPYLal 254
                 + +wga NR a++Rip   ++  +  +E R p ++a PY ++
  KKY21587.1 305 KFTWGAANRGASVRIPRqvARDGKGYFEDRRPASNADPYQIT 346
                 579**************777777778*************665 PP

>> Gln-synt_N  Glutamine synthetase, beta-Grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   1.4e-17   1.3e-13       4      82 ..      26     101 ..      24     102 .. 0.93

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 1.4e-17
                 EEEEEEE-SSS-EEEEEEEHHHHHHHTTTT-E.EEETTSSTTT------EEEEEEEGGGEEE-SS-SS-.EEEEEEEEE- CS
  Gln-synt_N   4 fvdlqFtDikgklkhvtipadelsedaleegv.sFDGSsiegfaeieeSDmlLkPdlstavidPfreekktarvicdvyd 82 
                 ++++ ++D++ ++++ t + ++  +++ + +  +FDGSs+ ++a++++SD++L+P    +++dPfr+   +++v+c++++
  KKY21587.1  26 MAEYVWIDGTNTMRSKTKTLNKAPKSIDDLPEwNFDGSST-EQAPGDNSDVYLRPA--AMYPDPFRQGD-NVIVMCECWN 101
                 6799********999999999998888889999*******.***************..********999.*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2366.77
//
Query:       KKY21588.1  [L=1034]
Description: putative udptransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-15   56.8   0.0    7.2e-15   55.3   0.0    1.9  1  Glyco_transf_28  Glycosyltransferase family 28 N-terminal dom
    1.3e-06   28.5   0.0    2.6e-06   27.5   0.0    1.4  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
    5.3e-06   25.5   0.0    8.2e-06   24.9   0.0    1.2  1  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
      0.001   19.4   0.1     0.0071   16.7   0.0    2.5  2  ATG_C            Autophagy-related protein C terminal domain


Domain annotation for each model (and alignments):
>> Glyco_transf_28  Glycosyltransferase family 28 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   1.6e-18   7.2e-15       1     138 [.     226     386 ..     226     387 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 1.6e-18
                      EEEEE-SSHHHHHHHHHHHHHHH.CTT-EEEEEEETCCCHHHHHHCCT-EEEE---G..........................HCTT..CHHHH CS
  Glyco_transf_28   1 ivllggGTgGhvfPalAlakeLk.kegheVrylgtkrgleerlveeaglefepiage..........................klrrklspknl 67 
                      ++++++G++G+++P++ +a+ L+ k gh+Vr ++t++ +++++++e glef +++g+                          +      +++l
       KKY21588.1 226 VLIAIIGSRGDIQPFIRIAQILRnKHGHRVR-FATHPVFRKFVEDECGLEFFSLGGDpselmafmvknpglipsidtvkkgeiGR---RRDQML 315
                      6899******************84679****.********************************************999874444...456666 PP

                      CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHCCCCCHCCCTTHCCCCCHCTS-ECCCCCCCCC-SCCC CS
  Glyco_transf_28  68 keilkvlkavvkakkilkeakpdavvgtggyvslpaviaaplaripviihEqnaipglanktlsrtatkva 138
                        +  +++a ++a    k++    ++g+g  ++++a+i +p++ ++ + +E +aip +  +t++  +t+++
       KKY21588.1 316 EMFEGFWRACINAADDEKNISNLKMLGSGYPFAADAIISNPPLFAHYHCAERLAIPLHLMFTFPYSPTQAF 386
                      66666777799999999999999999**************************************9999887 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   5.7e-10   2.6e-06      74     163 ..     566     653 ..     551     658 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 5.7e-10
                      -EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHH..HSSEEEE-STTCHHHHHHHHCCS---S---SSCH..CHHHHH CS
  Glyco_tran_28_C  74 dLvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekagaa..lvleqkeltpekLeeallelaaeklrlaekskasaaskfadl 163
                      + v+ ++Gagt a  l++g p+++vp+      +q   a+ +++aga+    + +k l+ ekL+e++le+++++ ++++++ a++  ++ d 
       KKY21588.1 566 KAVVHHGGAGTTAAGLRYGQPTLIVPFFG----DQPFWAQMVARAGAGasQPIPYKSLSAEKLAEGILECLTPEAKEKAQKIAQSIDQEGDG 653
                      56999**********************99....**********9766511679*********************998888877766555555 PP

>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   1.8e-09   8.2e-06     327     407 ..     553     633 ..     498     648 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.8e-09
       UDPGT 327 vkWlPqndlLgHPktkAFvtHaGangvyEaisnGvPmvglPlFgdqrdNikrmeakgaavt..lnvkemtsedllnAlkevin 407
                 ++ +P   l   Pk kA v H+Ga +   ++  G P  ++P+Fgdq+  ++ ++  ga+ +  +  k +++e l++ + e + 
  KKY21588.1 553 IDNVPHDWL--FPKMKAVVHHGGAGTTAAGLRYGQPTLIVPFFGDQPFWAQMVARAGAGASqpIPYKSLSAEKLAEGILECLT 633
                 555555444..5***************************************99999887762266788999888887766665 PP

>> ATG_C  Autophagy-related protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.3   5.6e+03      59      96 .]     736     773 ..     730     783 .. 0.64
   2 !   16.7   0.0   1.6e-06    0.0071      12      89 ..     893     970 ..     890     975 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.3
       ATG_C  59 vavlrPligateavsktlqGvrnqldpearkesedKYK 96 
                  av++ l  a   vsk+    r+ ++ +++ +++  YK
  KKY21588.1 736 GAVVASLAEAISGVSKIPFQTRKDINNHKKAKQRRTYK 773
                 55666666666666666666666666666555555555 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.6e-06
       ATG_C  12 reGlqqAysslskglksaaqtilavpsevaeskgakgavkavvravPvavlrPligateavsktlqGvrnqldpeark 89 
                 r  ++   ++++ g+    + ++++p +  +++g+ g v++v++ +  +vl+P+ g+  + + + +G++ ++++ ar+
  KKY21588.1 893 RTSMTATEEEVRYGIADGVSGLVKLPYHDVKRDGPIGIVTGVAKGIGGLVLKPITGLLAIPTYLSKGIQMEIQKRARD 970
                 5566666678899999999*****************************************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1034 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.47
# Mc/sec: 6614.08
//
Query:       KKY21589.1  [L=642]
Description: hypothetical protein UCRPC4_g03540 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-92  310.1   0.0      3e-92  309.8   0.0    1.1  1  Med1      Mediator of RNA polymerase II transcription subunit


Domain annotation for each model (and alignments):
>> Med1  Mediator of RNA polymerase II transcription subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.8   0.0   1.7e-96     3e-92       2     415 .]      80     491 ..      79     491 .. 0.87

  Alignments for each domain:
  == domain 1  score: 309.8 bits;  conditional E-value: 1.7e-96
        Med1   2 kvlqlLqekvsgrqvsreglerLarqlgLetfwdennklsektqtLsIAgssfyLeIdfeed.nkVkdVsLslagseaeqsgeereeAseiLlrdLr.. 97 
                 +++++L+++v+gr+v+re++erLa++ g++++w++++        L+IAg+s++LeIdf ++ ++V dVsL++a s ae++ e +eeAs++L+rdL+  
  KKY21589.1  80 EIIAMLKTRVAGRGVCREAIERLAQLAGFTFLWQDDT--------LTIAGNSVDLEIDFHPGsDRVRDVSLKIAMS-AEVEAEGKEEASRVLKRDLMqd 169
                 789********************************99........**************8877*************.99******************** PP

        Med1  98 ....ltkkldeFaanLerLarlDklsgdpklncfealegleesLqklsqleskshwelekk....deeleelglcssvGkptmhkkgrvGLsldYWvep 188
                      +k+l+ F++nL+rL rlDkls  +++ncfea+egl+es++k+        w +ek+     + l +l + + +G+p mh++++ GL+l+YW+++
  KKY21589.1 170 dgviGWKQLNGFSQNLDRLGRLDKLS--QGINCFEAIEGLYESFRKI--------WSEEKHrmrkLSTLRRLSK-GGIGRPIMHRGDKFGLALEYWAPK 257
                 **************************..9******************........9988888553333333333.7799******************** PP

        Med1 189 rrlldekek.ksss.lsgdeyelsekdsllenqekvwsiliecealkelgypplrvsknwislevekp....ekseslvldWlepeptl.......... 271
                 + l + +++  + + +++de+e  e++    +   +ws  iecea    gyp+lrvsk+w+s+e   +    +++++l   Wl+p p +          
  KKY21589.1 258 AALTERTSTpGDVDaMETDEDETVERK----SVIDAWSGRIECEA----GYPSLRVSKDWVSQEALRNssgeNSTDNLANAWLDPAPSMitegdsnmet 348
                 *****9888766666766665544333....369***********....**************999989999999999999******999******965 PP

        Med1 272 qlds....lgsklpnarFvlkleppvpvplslaeelyrltglnmeqeees..k.tatldaLvvpvengkstdsesrekrrrrqvlsklsedeegkelek 363
                    +       ++pn+rFvl+lep+v +pl +a+e  +  g+++  + +s  + ++ ++++ ++v ++   +  s+  r++++v s+    ++    ++
  KKY21589.1 349 D--DaarnVVPQSPNVRFVLELEPEVLLPLGVASEALNTAGVSLARDGRSmvDiLEHVKGM-LKVAPHVDGQHPSTFLRWKKEVTSF---VDDSIRQSN 441
                 0..3445688999**********************9999********99766323333333.23333333333778889999****9...677778888 PP

        Med1 364 shsytfqitkdlpglgitvkelpFshPrqlpeiLpiLRqyallstLlrscfk 415
                  hs  f ++ +++++  +v+ ++F hPrq+++ Lp+LRqyall+tLlrs++k
  KKY21589.1 442 PHSLLFRTNGQVWCC--PVQAISFDHPRQIASFLPVLRQYALLWTLLRSSVK 491
                 999999999999999..********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4347.94
//
Query:       KKY21590.1  [L=464]
Description: putative lipase serine [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.4e-38  130.1   0.0    1.3e-37  129.4   0.0    1.2  1  DUF676        Putative serine esterase (DUF676)
    0.00023   21.1   0.0    0.00054   19.9   0.0    1.7  2  Palm_thioest  Palmitoyl protein thioesterase
  ------ inclusion threshold ------
      0.015   15.1   0.0      0.029   14.3   0.0    1.4  1  Lipase_3      Lipase (class 3)
      0.037   13.8   0.0      0.065   12.9   0.0    1.4  1  PGAP1         PGAP1-like protein


Domain annotation for each model (and alignments):
>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.4   0.0   2.9e-41   1.3e-37      14     215 ..      14     203 ..       5     209 .. 0.91

  Alignments for each domain:
  == domain 1  score: 129.4 bits;  conditional E-value: 2.9e-41
      DUF676  14 lqgnsaDlelikeqlekikeklpee.kieflmsennesktfkgidvlgerlaeevlevvkkkkdk...nkkiSfvghSlGgliaraaiaklkekemtlk 108
                 l+ n+++l+++ e l++   ++ ++  + +  ++n+ ++t++gidv +er ++e++ + kk +++   ++k S+vg+SlGgl ar++i+ l       +
  KKY21590.1  14 LKCNPDHLKYLSETLQN---HYGKDkLVTLNCKSNAGNFTYDGIDVGAERAVKEIRAFSKKLNEDgqpITKFSIVGYSLGGLLARYVIGCLD-----HD 104
                 56899************...666662666677899999************************9999**99*******************888.....35 PP

      DUF676 109 eaikglepvtfitlasPhLGvlysskslinlglalleklkkslsmeqlgltGrdLflkddkdeknsllykllkdekdlkliealklFkrrvlyanvvnd 207
                 ++++ ++pv+f+t+a+PhLG+++   +       + +++ ++   ++++ +G++Lf++d+ ++++  l+++++d  d  ++ al++F+  ++yan++nd
  KKY21590.1 105 GFFQSIKPVNFTTFATPHLGTRTPLTL-------WTSHVFNTFGPKIVSASGQQLFVMDEFRDTKMPLLEIMTDP-DSIFMRALAKFEVKTIYANILND 195
                 899**********************99.......99999999*****************************8877.5889999**************** PP

      DUF676 208 rivplase 215
                 r++ ++++
  KKY21590.1 196 RLAHFYTT 203
                 ******93 PP

>> Palm_thioest  Palmitoyl protein thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.2e-07   0.00054      15     134 ..      21     154 ..       5     202 .. 0.63
   2 ?   -3.5   0.1       1.7   7.5e+03     172     201 ..     327     356 ..     304     382 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.2e-07
  Palm_thioest  15 mqklaeliekli.gtyvknveigeseaedrkasffgnlndqvea...vckk.....lelangfhaiGfSQGglflRaliercddkkn.....vrnli 97 
                   ++ l e++++++ + + + ++ ++++ + +++++   ++  v++   + kk     +   ++f ++G+S Ggl++R +i   d++         n+ 
    KKY21590.1  21 LKYLSETLQNHYgKDKLVTLNCKSNAGNFTYDGIDVGAERAVKEiraFSKKlnedgQ-PITKFSIVGYSLGGLLARYVIGCLDHDGFfqsikPVNFT 116
                   556666666655324444444334433344444433333333333324444766742.5678******************998887799988559** PP

  Palm_thioest  98 slggpqaGvfgl..llckvaekllasgavysklvqkslv 134
                   ++++p+ G  +   l+ +++ + +  + + s+ +q+ +v
    KKY21590.1 117 TFATPHLGTRTPltLWTSHVFNTFGPK-IVSASGQQLFV 154
                   *********995332222222333333.45555555433 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.7
  Palm_thioest 172 knllkleklvlvgfsdDtvvvPkeSslfgf 201
                   +n + ++ l +  +++ ++ +P+ Ss  + 
    KKY21590.1 327 ANSSPITDLTMPTMQQQDIATPNSSSSSSP 356
                   455566667777777777777777775443 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   6.4e-06     0.029      53     111 ..      67     127 ..      20     146 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.4e-06
                 HHHHHHHHHTT.-EEEEEEEETHHHHHHHHHHHHHHHTT-SS.---EEEEEES----B-HH CS
    Lipase_3  53 kelkrllekyp.eysivvtGHSLGgalAlLaaldlvengene.kkkvtvvtfGqPrvgnke 111
                 +  k+l e  +  +++ ++G SLGg lA  +   l ++g  +  k+v+  tf++P  g ++
  KKY21590.1  67 AFSKKLNEDGQpITKFSIVGYSLGGLLARYVIGCLDHDGFFQsIKPVNFTTFATPHLGTRT 127
                 444555555553599************************9997899***********9876 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.5e-05     0.065      77     132 ..      63     125 ..      38     144 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.5e-05
       PGAP1  77 kyIlsly...sssekeptsviliGHSmGGivaraaltlkn..yikqsvn..tiltlasPhalp 132
                 k+I       ++  +++t+  ++G S+GG++ar ++   +     qs++  +  t a+Ph  +
  KKY21590.1  63 KEIRAFSkklNEDGQPITKFSIVGYSLGGLLARYVIGCLDhdGFFQSIKpvNFTTFATPHLGT 125
                 44444333337888999*****************98766522234666633567888998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 3132.89
//
Query:       KKY21591.1  [L=1091]
Description: putative pre-rrna processing protein utp22 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-62  208.4   0.3    1.3e-61  207.7   0.3    1.3  1  Nrap_D4   Nrap protein nucleotidyltransferase domain 4
    2.4e-56  190.0   0.5    4.7e-56  189.0   0.5    1.5  1  Nrap_D5   Nrap protein PAP/OAS1-like domain 5
    4.5e-40  137.3   0.0      1e-39  136.1   0.0    1.6  1  Nrap_D3   Nrap protein domain 3
    8.9e-40  136.2   0.0    1.8e-39  135.2   0.0    1.5  1  Nrap      Nrap protein domain 1
    3.7e-38  130.7   0.0    2.9e-36  124.5   0.0    2.8  2  Nrap_D2   Nrap protein PAP/OAS-like domain
    5.7e-30  104.3   0.0      1e-29  103.5   0.0    1.4  1  Nrap_D6   Nrap protein domain 6
  ------ inclusion threshold ------
      0.065   12.7   0.0       0.13   11.7   0.0    1.4  1  DUF1454   Protein of unknown function (DUF1454)
       0.13   12.7   0.0       0.26   11.7   0.0    1.4  1  PPV_E1_N  E1 Protein, N terminal domain


Domain annotation for each model (and alignments):
>> Nrap_D4  Nrap protein nucleotidyltransferase domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.7   0.3   5.8e-65   1.3e-61      18     213 .]     594     775 ..     581     775 .. 0.96

  Alignments for each domain:
  == domain 1  score: 207.7 bits;  conditional E-value: 5.8e-65
                 TT--HHHHHHHHHHHHHHHHHHT-.--SS-EEEEEE-SGGGGT--SS---TT.......-.....TTSTEEEEEEE---TTS-SSHHHHHHHHHHHHHH CS
     Nrap_D4  18 stseeafssvikaFdeLekdlrsLedLPLsirsvqpaspalRytsvfppvpvklsppkaaksskeylepidvvlqfEsSgkWPddleAiqkvKaAFllk 116
                 + ++++f+ +i+ F++++ +l++Le+LPL+irs+++++++lR +s+  p                 ++p+d+++qfE+S++WPd l+Aiq++K+AFl k
  KKY21591.1 594 EPAQQSFQTIIDTFQTFSSKLHALEGLPLAIRSLSAVDEQLRFSSLLDPLK--------------SSRPADIIIQFEGSSRWPDALTAIQRTKIAFLTK 678
                 667899*******************************************87..............689******************************* PP

                 HHHHH.HH-TTSEEEEEE-------...EEEEEE-TTS-EEEEEEE-TTHHHHHHHHH...HHS-TTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHT CS
     Nrap_D4 117 iaeeLeekkseikarvgldnssekianqayLdvlkesgfaFrlrilherEltllerqlkdkglakkereeaaealaklerrfvhlprhtsaiaglct 213
                 i+++Le++++ +++rvgl+n+++++ n ayLdv+ ++g+ Frlri+herE+tllerql+dk+   ++ree a+ala+++r++vh+prht+ai++lct
  KKY21591.1 679 IGDLLESADEPLSTRVGLENTHSDLLNVAYLDVFSPNGVLFRLRIHHEREQTLLERQLQDKDIHGRTREEIAQALATYKRDYVHSPRHTQAIRALCT 775
                 ******888889*********99************************************************************************97 PP

>> Nrap_D5  Nrap protein PAP/OAS1-like domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.0   0.5   2.1e-59   4.7e-56       1     161 [.     777     936 ..     777     937 .. 0.98

  Alignments for each domain:
  == domain 1  score: 189.0 bits;  conditional E-value: 2.1e-59
                 -TTHHHHHHHHHHHHHHTT-T.TTS-HHHHHHHHHHHHHS-TTS----SHHHHHHHHHHHHHH--TTT--EE----------HHHHHHHHHHHHHHHHH CS
     Nrap_D5   1 fpaysptvrLvkrWlashlLleghvseelvELlvakvFlqpapysvPssaetGFlrvLelLarwdWkeepLivdlnesekltaeeikeietrfealrks 99 
                 fpa+s+t+rLvk+W+ shlL+ + ++ el+EL++a+vFl+p+p+++P+++ t+FlrvL+l+++wdW ++pLi+d+++ ++++ ++i++i+t+f+a rk+
  KKY21591.1 777 FPALSSTIRLVKKWICSHLLS-SFFTPELLELFAAQVFLRPQPWTIPTTPFTAFLRVLHLISKWDWASTPLILDFSNGDEMSPTDIANITTTFQARRKI 874
                 89*****************99.***************************************************************************** PP

                 -TTSSS----EE-SS-TTS-TTT.--HH...HHHHHHHHHHHHHHHHHHH....-SSHHHHTS CS
     Nrap_D5 100 dpamnktalfvatekDkegtlwt.kekpskvvaaRltaLAkaalelleekevsekldvkslFt 161
                 dpamn+ +lfva++ D++g++wt +++p kvva+RltaLA+a+++++++k    ++d++slF+
  KKY21591.1 875 DPAMNNIVLFVASNLDPSGIVWTqNSQPPKVVATRLTALARASISAIKDKN-APEFDIRSLFQ 936
                 ***********************9999***********************4.5599******8 PP

>> Nrap_D3  Nrap protein domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.1   0.0   4.7e-43     1e-39       4     159 ..     434     574 ..     431     575 .. 0.85

  Alignments for each domain:
  == domain 1  score: 136.1 bits;  conditional E-value: 4.7e-43
                 HSSEEEEEE--HHH-SS---HHHHHHHSSHHHHHHHHHHHHHHHHHGGGEEEEEEEEE.T-EE-TTSSS-BSSS-SEEEEEEEE-TTTTT-SEEEEEE- CS
     Nrap_D3   4 kfDlvlriklseekakekkeekekldlseaeeallskvssvlkkaLgdRvkliaikle.eeewsiekkkskeakeskleiglllnpenaerlvdkGPsa 101
                 +fD++++++l+ e               + ++++l+k+++vl k+++dR+++++++ +  ++w+++++   + +  k+eiglll+pen++r+vd+GP a
  KKY21591.1 434 RFDQLAHVDLPLE------------GSLQDKRQALRKLHEVLVKGFNDRTRFVNLQYPaIKSWNLNRSL-PTPSGIKVEIGLLLDPENVNRVVDRGPTA 519
                 6666666666611............1123457899*********************99777****9655.4667889********************** PP

                 S--HHHHHHHHHHGGGEEEEE-TTS-EEEEEE----SSS...-HHHHHHHHHHHHHT- CS
     Nrap_D3 102 edkeeaaeFreFWgekselRrFkDGsIlesvvWeksskserrsiveqIvkyiLkrhlk 159
                 edkeea+eFr+FWgek+elRrF+DG+I+es+vW+++ +   +siv+qI+  +L++h++
  KKY21591.1 520 EDKEEAEEFRKFWGEKAELRRFRDGTISESLVWSETGH---QSIVHQILAVLLSHHFG 574
                 *********************************55544...49*************97 PP

>> Nrap  Nrap protein domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.2   0.0   7.9e-43   1.8e-39       1     151 [.     143     283 ..     143     284 .. 0.94

  Alignments for each domain:
  == domain 1  score: 135.2 bits;  conditional E-value: 7.9e-43
                 EEEEEE--GGG--TTTTSTTHHHHHHHHHHHHHHHHHHHHHHHTGTEEEEEEEGGG-TT-EEEEEEE---.----GGGTEEEEEEEE--TTSS-GGGGS CS
        Nrap   1 VDlavemPkslfqekDylnlRyfyKRalYLavlaaelskskkkedlvkvsfeylngdelkpiLvirpkkeaekkfskskfririipvapsdlfklskls 99 
                 +Dla+++P++ fqekDyln+Ryf+KRa+++a  aa++++   ++d+++v f+ +++ el+++++i+p k+a+++f++sk+ririip++p+++f+l k++
  KKY21591.1 143 IDLAITLPSQAFQEKDYLNHRYFHKRAYFVAQFAAAIKHV--AKDQFEVAFTLQDDVELQTCIIITPGKSASEDFAQSKARIRIIPAVPDSTFSLDKTN 239
                 8************************************875..4578***************************************************** PP

                 TTS--S----........---------HHHHHHHHHTT-HHHHHHHHHHHHH CS
        Nrap 100 psknnirvetlkeekesseeeetlppTPlYNssilsdllleehlkllhkakk 151
                  s+n++r++         +++   +pTP+YNs+++ +++++++l +l+ka k
  KKY21591.1 240 ISRNCVRPKG--------GDDPIFEPTPFYNSCLRCEASVTPYLGYLNKALK 283
                 *******543........4566789************************987 PP

>> Nrap_D2  Nrap protein PAP/OAS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.5   0.0   1.3e-39   2.9e-36       1     151 [.     287     426 ..     287     427 .. 0.91
   2 ?    2.8   0.0     0.039        88      60      96 ..     827     860 ..     823     881 .. 0.73

  Alignments for each domain:
  == domain 1  score: 124.5 bits;  conditional E-value: 1.3e-39
                 THHHHHHHHHHHHHHTT--SS--TS-S-SHHHHHHHHHHHTSBBSTTS-BSS-TT--HHHHHHHHHHHHHHS--SS-EEEE-------BEEES-.--SS CS
     Nrap_D2   1 afkdAclLlkvWlrqRgfgssirkaggfggfewamllalllqgggkkgrkklskslssyqlfkavlqfLastdltkkpiflgaskseeskkeseeefsk 99 
                 a++dAclL+ +Wl+qRg++s +  +gg+g +ewa++ alll+ggg+k+r   s+ ++syqlfk+vlq Las+dl ++p+++g+ +    + ++++    
  KKY21591.1 287 ALRDACLLGATWLHQRGYDSPVC-CGGIGPHEWALVSALLLEGGGPKNRPMFSPRYNSYQLFKGVLQLLASRDL-RDPLVIGPLS---GE-IPRS---- 375
                 589****************6555.59***********************************************9.77****7655...23.3333.... PP

                 ...--EEETTT--BTTTT--HHHHHHHHHHHHHHHHHHT-SSS--HHHHHT- CS
     Nrap_D2 100 afepvlvdpsgklNllakmtassydlLqqeAketlelLddsssdqFdslFlt 151
                   +p+l+d ++++N+l+km+++sy+l++++A+ tle+ +d+  d+F+s+F+ 
  KKY21591.1 376 -SSPILYDARRGVNVLFKMNPWSYSLIRHDAQATLEASNDKLIDNFESTFIA 426
                 .35***********************************************96 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.039
                 HHHHHHHHHHHHS--SS-EEEE-------BEEES-.- CS
     Nrap_D2  60 qlfkavlqfLastdltkkpiflgaskseeskkeseee 96 
                   f  vl+ ++++d++++p++l+ s+    +++s+++
  KKY21591.1 827 TAFLRVLHLISKWDWASTPLILDFSN---GDEMSPTD 860
                 67999****************95444...33333333 PP

>> Nrap_D6  Nrap protein domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.5   0.0   4.5e-33     1e-29       1     135 []     939    1086 ..     939    1086 .. 0.91

  Alignments for each domain:
  == domain 1  score: 103.5 bits;  conditional E-value: 4.5e-33
                  --S-SEEEEEE-SS--TTTT.......TB---------------....GGGGGGS-HHHHHHHHHHHHHTT.TEEEEE-S-HHEEEEEEE-GGG..S CS
     Nrap_D6    1 ledYDvvihLkpkvlprlseavaekspgakkkskfkNlderaes....dkllvkfdpvqllleeLeraygd.tllffydklggdvigglwnpsv..l 90  
                  l+++D+++h++p +l+++  + +++    k++skfkNl+ +       d+ +++f+p++l++++L++ ++  ++lff+++ gg+vi+glwnp +   
  KKY21591.1  939 LTHFDFLLHINPAILQQYLPSSSSNALLTKRSSKFKNLQLTHLTppshDPETIDFNPISLYINDLQKSFDPsVVLFFHNANGGNVIAGLWNPRTvgE 1035
                  689*************9888776666666669*******999999************************863789*****************88344 PP

                  S-EE--TT--S-EEESSSS........EEEE-HHHHHHHHHHHHGGGEEEE CS
     Nrap_D6   91 kprkfkvnlgystkpvakekk......evelNkeaileeiarlGggLvksi 135 
                  + ++f+v lg+s++p+a++++       v +Nk+a+++e+  lG+g+v+++
  KKY21591.1 1036 TTKEFRVRLGWSSIPIASDTDqgddkdLVAVNKKAMVAEMVALGEGIVEKV 1086
                  677***************999***************************997 PP

>> DUF1454  Protein of unknown function (DUF1454)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     6e-05      0.13      87     136 ..     962    1011 ..     953    1018 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6e-05
     DUF1454   87 ssavLErgtekikslqltllpseegpeekearakaleYmaAlirqfePtl 136 
                  s a L + + k k lqlt+l + +++ e  + + +  Y+  l ++f+P++
  KKY21591.1  962 SNALLTKRSSKFKNLQLTHLTPPSHDPETIDFNPISLYINDLQKSFDPSV 1011
                  557899**************97666667777899999***********86 PP

>> PPV_E1_N  E1 Protein, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00012      0.26      53      99 ..     736     783 ..     726     794 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
    PPV_E1_N  53 nslelfqaqeaeesekalqvLKRKylkSPksr.dvaelSPrLeaisle 99 
                   +++ + +++ee  +al++ KR y++SP++  ++ +l  r  a+s +
  KKY21591.1 736 LQDKDIHGRTREEIAQALATYKRDYVHSPRHTqAIRALCTRFPALSST 783
                 5567788899*******************9987899999998887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1091 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.47
# Mc/sec: 6939.40
//
Query:       KKY21592.1  [L=531]
Description: putative cystathionine gamma-synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-34  117.3   0.0    7.9e-34  116.8   0.0    1.1  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
  ------ inclusion threshold ------
      0.065   12.4   0.0       0.12   11.5   0.0    1.4  1  Aminotran_1_2    Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8   0.0   8.8e-38   7.9e-34      69     381 ..     209     522 ..     198     523 .. 0.88

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 8.8e-38
                      EEEEESSHHHHHHHHHHTTS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEEST...TSHHHHHHHCCT..TEEEEEEESS-TTTT----HH CS
  Cys_Met_Meta_PP  69 aalavssGmaAiaaailallkaGdeivvsddlYggtqrllkkvlkklgievkfvdt...sdleelekaike..ntklvylEtptnpllkvvDie 157
                       ++++++Gm++i+++ + ll + ++   ++ ++g  +    kvl+k+g  v f+     +dl++le+ +k+  +  ++++E p+npll+ +D++
       KKY21592.1 209 DVYLFPCGMSSIFNTHQILLASREQ--RKSVCFGFPYIDTLKVLEKWGPGVLFYGNgtdDDLDHLERRLKNgeRFLALFTEFPSNPLLRSPDLQ 300
                      578999******9988888877665..456666666666666677777666666443447899999999986688899**************** PP

                      HHHHHHHHTT-EEEEEGTTTHTTTS-GGGGT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHH.HHHHHT-B--HHHHHHHHHHHTTHH CS
  Cys_Met_Meta_PP 158 kiaklakkagvlvvvDntfaspllqrplklgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkf.lqnalGavlspfdawlllrGlkTLs 250
                      +i +la + +  +vvD ++   ++++ l++ aD+vv S TK  +G s+v++G ++ +++  + +++k+ ++          da  l r  +   
       KKY21592.1 301 RIRRLADQYDFAIVVDESVGNLINVNVLQY-ADVVVSSLTKVFSGDSNVMGGSATLNTQSPIYQSIKQaFNTYYEDNYWIEDAVFLERNSRDFI 393
                      *****************************9.9*******************************999882455567788999************* PP

                      HHHHHHHHHHHHHHHHHHTSTTEEEEE-TT.STTSTTHHHHHHHSSSG-SEEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTT CS
  Cys_Met_Meta_PP 251 lRlerhqenAlkvAefLekhpkvekvyYpg.lpshpqhelakkqlkgaggvlsFelkseeekakkfvdnlklfslaeslGgveslielpasmth 343
                       R+er + +  +v efL+++p +++vyYp  +ps+++++  k+ + g+gg++s++ +   e+a +f dnl++++   slG   +l ++p +   
       KKY21592.1 394 SRIERMNYTTEAVIEFLRSSPLIKDVYYPNcVPSKKHYDACKNPHGGYGGLFSLTFHAY-EHAIAFFDNLHVLK-GPSLGTNFTL-SCPFVIIA 484
                      *****************************6479***********************988.88*********986.78**986665.78887766 PP

                      TTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHHHHHH CS
  Cys_Met_Meta_PP 344 asipkeereaagvtddliRlsvGiEdvdDliaDlkqal 381
                      +  + +  ++ gv  dl+R++vG+E+ +Dlia ++ al
       KKY21592.1 485 HYNELDWAASFGVPRDLVRVAVGLEEKEDLIARFQVAL 522
                      6677788899**********************999998 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.4e-05      0.12     131     189 ..     267     318 ..     253     373 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.4e-05
                    -HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEET CS
  Aminotran_1_2 131 dlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDea 189
                    dl++le+ lk+  e+      +++e p+NP    ++l+ ++ l   a++y + ++vDe 
     KKY21592.1 267 DLDHLERRLKN-GERFL---ALFTEFPSNPLLRSPDLQRIRRL---ADQYDFAIVVDES 318
                    99********9.45555...9*********9888888888888...***********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 3407.43
//
Query:       KKY21593.1  [L=297]
Description: putative mitochondrial tricarboxylate transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-53  178.9   1.7    1.2e-22   79.6   0.1    4.0  4  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0     2e-10   3.5e-06       4      43 ..      14      53 ..      11      57 .. 0.89
   2 !   11.3   0.0   1.3e-05      0.24      63      96 ..      63      96 ..      60      97 .. 0.92
   3 !   57.9   0.0     4e-20   7.2e-16       4      94 ..     101     191 ..      98     194 .. 0.91
   4 !   79.6   0.1   6.7e-27   1.2e-22       3      93 ..     200     287 ..     198     290 .. 0.95

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2e-10
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTT CS
   Mito_carr  4 svlkellaGglagavatlvttPldvvKtrlqtqkksskks 43
                s+l++++aG+ aga++  +t+P +++Ktr q++++ s ++
  KKY21593.1 14 SALRSVIAGASAGAIEIAITYPAEFAKTRTQLNRQLSDAK 53
                7899****************************99877665 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 1.3e-05
                GGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
   Mito_carr 63 glyrGllpnllrvapasalkfvlyetlkrlllkk 96
                  y G++  +++++ ++a++fv+++ +k ll+++
  KKY21593.1 63 QWYAGCTTLIIGNSLKAAIRFVAFDAYKGLLQDE 96
                579**************************99876 PP

  == domain 3  score: 57.9 bits;  conditional E-value: 4e-20
                 HHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   4 svlkellaGglagav.atlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 s  ++++aG  ag++ + l++tP++ +Kt+l  ++ks + + ++ +l+  + i++e+G rg+++G++p+  r+a +sa++f++y ++k+l +
  KKY21593.1 101 SGPRTVIAGFGAGITeSLLAVTPFESIKTQLIDDRKSPNPRMRG-FLHGSSIIFREKGPRGFFQGFVPTTARQAANSAVRFGSYTSIKQLAQ 191
                 557899*********566789****************9987655.*******************************************9976 PP

  == domain 4  score: 79.6 bits;  conditional E-value: 6.7e-27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 l++++++++Gg+ag++++ +t+Pld+vKtr+q+   +s++++    +d++ ki+k+eGl  l++G+lp+l r + + ++ f++ye+  +l+
  KKY21593.1 200 LGTVSTFAIGGMAGLITVYATQPLDTVKTRMQSIDARSNYKH---SIDCFAKILKNEGLFTLWSGALPRLGRLILSGGIVFTMYEKSMDLM 287
                 678999*******************************99988...8***************************************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 1770.50
//
Query:       KKY21594.1  [L=154]
Description: putative protein-l-isoaspartate o-methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-34  117.1   0.0    5.7e-33  114.4   0.0    1.8  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    1.7e-08   34.4   0.0    2.6e-08   33.8   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
    7.2e-06   26.1   0.0    7.2e-06   26.1   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
    1.7e-05   25.5   0.1    2.8e-05   24.7   0.1    1.5  1  Methyltransf_25  Methyltransferase domain
    0.00013   21.8   0.0    0.00015   21.6   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
     0.0004   21.0   0.0    0.00061   20.4   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
      0.002   17.7   0.0     0.0052   16.4   0.0    1.7  2  MTS              Methyltransferase small domain
     0.0073   17.0   0.2       0.02   15.6   0.2    1.8  1  Methyltransf_12  Methyltransferase domain
     0.0091   15.4   0.1       0.01   15.2   0.1    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
  ------ inclusion threshold ------
      0.014   15.0   0.0       0.02   14.5   0.0    1.2  1  MetW             Methionine biosynthesis protein MetW
      0.027   15.5   0.1      0.043   14.8   0.1    1.5  1  Methyltransf_24  Methyltransferase domain
      0.049   12.7   0.0      0.059   12.4   0.0    1.1  1  RrnaAD           Ribosomal RNA adenine dimethylase
       0.11   12.5   0.0       0.13   12.3   0.0    1.2  1  FtsJ             FtsJ-like methyltransferase
       0.22   11.3   0.0       0.36   10.6   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)


Domain annotation for each model (and alignments):
>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   0.0   4.5e-36   5.7e-33      61     208 ..       1     146 [.       1     148 [. 0.89

  Alignments for each domain:
  == domain 1  score: 114.4 bits;  conditional E-value: 4.5e-36
                 HHHHHHHHTT..--TT-EEEEES-TTSHHHHHHHHHHC...TTCEEEEEESBHHHHHHHHHHHHHCTTCSEEEEES-GGGTTGGG-SEEEEEESSBBSS CS
        PCMT  61 mvalalelle..lkkgarvLevGsGsGyltavlarlvg...ekgrvvsierikelveeakrnlkkldlenvivvvgDGrkGyeekaPYdaihvgaaape 154
                 m+a a e l   l+++arvL++GsGsGylt vla+l+g   ++g+vv++++i+elv+ a+ n+ k++  + ++          e+  Ydaihvgaaa  
  KKY21594.1   1 MHASAAESLLqyLHPKARVLDIGSGSGYLTHVLANLIGdgdTEGKVVGLDHIPELVDLANSNMGKSEEGRKML----------ETGKYDAIHVGAAAAT 89 
                 788888755449*************************8444589*******************9988654444..........4567************ PP

                 --HHHHHTEEEEEEEEEEESB...SSSEEEEEEEEETTTEEEEEEEEEE---B-BCC CS
        PCMT 155 iPealidQLkeGGrlvvPvge...eeeQvlklvdkkadgkvvikkleevrfvpltdk 208
                 +  +lidQLk+ Grl +Pv++    + Q + +vdk+++gkv++kk+e vr+vpltd 
  KKY21594.1  90 LHAELIDQLKSPGRLFIPVEDnkgYGDQWIWVVDKDENGKVTQKKKEGVRYVPLTDA 146
                 *******************98655579****************************85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0     2e-11   2.6e-08       3      50 ..      15      65 ..      13     107 .. 0.91

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 2e-11
  Methyltransf_31  3 kglrvlDlGCGtGeltfelaeelgp...kaevvGiDiseeaielArenaqk 50
                      + rvlD+G+G+G+lt++la ++g+   +++vvG+D  +e + lA++n  k
       KKY21594.1 15 PKARVLDIGSGSGYLTHVLANLIGDgdtEGKVVGLDHIPELVDLANSNMGK 65
                     6789****************87777666778**************998655 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   5.6e-09   7.2e-06      24      75 ..      14      67 ..       2     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 5.6e-09
  Methyltransf_32 24 sgaltvvDvGaGkgYLsfvlal..kekeyklkvvgidakeelvekaekraeklg 75
                     +++ +v+D+G+G gYL+ vla    + + + kvvg+d   elv+ a+    k +
       KKY21594.1 14 HPKARVLDIGSGSGYLTHVLANliGDGDTEGKVVGLDHIPELVDLANSNMGKSE 67
                     56789*****************86444689*************99988766665 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   2.2e-08   2.8e-05       1      45 [.      19      67 ..      19      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2.2e-08
                     EEEET-TTSHHHHHHHCTS..T..SSEEEEEESSHHHHHHHHHHHHHTT CS
  Methyltransf_25  1 vLdlGcGtGrltlalakrl..g..kakvtgvDiseemleaareraeeeg 45
                     vLd+G G+G lt  la+ +  g  ++kv+g+D  +e+++ a++++ +++
       KKY21594.1 19 VLDIGSGSGYLTHVLANLIgdGdtEGKVVGLDHIPELVDLANSNMGKSE 67
                     9*****************9663789******************997743 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.2e-07   0.00015      14      87 ..       7      82 ..       3     130 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.2e-07
  Methyltransf_23 14 erllpklraggrvLdiGcGtGillevlren.gf.....svtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIv 87
                     e ll++l +++rvLdiG G+G+l+ vl+   g      +v+g D  pe+v++a    +++  +  e     + gk+d I+
       KKY21594.1  7 ESLLQYLHPKARVLDIGSGSGYLTHVLANLiGDgdtegKVVGLDHIPELVDLA----NSNMGKSEEGRKMLETGKYDAIH 82
                     6689999****************9999553242335679********999997....33333332222222556777776 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.8e-07   0.00061       1      43 [.      20      68 ..      20     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.8e-07
                     EEET-TTSHHHHHHH...HTT....SEEEEEES-HHHHHHHHHHCCHHT- CS
  Methyltransf_11  1 LdvGcGtGrlaeala...krg....arvvgvDlskemlklakekaseegl 43
                     Ld+G+G+G+l+  la          ++vvg+D  +e+++la+++  ++++
       KKY21594.1 20 LDIGSGSGYLTHVLAnliG-DgdteGKVVGLDHIPELVDLANSNMGKSEE 68
                     8**************6552.046779***************999998875 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.1e-06    0.0052      19      75 ..       5      63 ..       3      86 .. 0.71
   2 ?   -1.0   0.0      0.84   1.1e+03     120     146 ..      89     115 ..      77     135 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.1e-06
                HHHHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.E....EEEEESBHHHHHHHHHHH CS
         MTS 19 GsklLletlpkelsgkvlDlGcGaGvlgaalakespeae....vtlvdvdarAlesakenl 75
                +++ Ll++l+   + +vlD+G+G G+l+ +la+   + +    v+ +d   + +++a+ n+
  KKY21594.1  5 AAESLLQYLHP--KARVLDIGSGSGYLTHVLANLIGDGDtegkVVGLDHIPELVDLANSNM 63
                56789999998..567**************9987654321112555666566666666665 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.84
                 HHHHHHHHHEEEEEEEEEEEETTSCHH CS
         MTS 120 eliaeAkeaLkegGeLliVanrklgye 146
                 +l ae  ++Lk+ G+L+i ++ + gy 
  KKY21594.1  89 TLHAELIDQLKSPGRLFIPVEDNKGYG 115
                 455555678999999998777777775 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2   1.6e-05      0.02       1      42 [.      20      65 ..      20     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.6e-05
  Methyltransf_12  1 LeiGcGtGsllrallekl....pdieytgvDispsaiedakeklak 42
                     L+iG+G+G l+++l++ +     + +++g+D  p+ ++ a   + k
       KKY21594.1 20 LDIGSGSGYLTHVLANLIgdgdTEGKVVGLDHIPELVDLANSNMGK 65
                     8*********************9********999999555555444 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   8.2e-06      0.01     154     206 ..       8      65 ..       3     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.2e-06
        PrmA 154 aleklvkegeevlDvGtGSGiLa.iaaakLg....akkvvavDiDevAvkvakeNael 206
                 +l ++++++++vlD+G GSG L+ + a ++g      kvv++D  +  v+ a++N+ +
  KKY21594.1   8 SLLQYLHPKARVLDIGSGSGYLThVLANLIGdgdtEGKVVGLDHIPELVDLANSNMGK 65 
                 67789999**************835556666222246899***999999999999865 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.5e-05      0.02       6      33 ..       8      35 ..       4      52 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
        MetW  6 liaelikpgsrvldlGcGdGellellke 33
                 ++++++p++rvld+G+G G l ++l++
  KKY21594.1  8 SLLQYLHPKARVLDIGSGSGYLTHVLAN 35
                578899*****************99976 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   3.4e-05     0.043       1      50 [.      20      81 ..      20     133 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.4e-05
  Methyltransf_24  1 vEiGvysGvstlwllralrrnga.grlvavdhdpg...........aeeaaalareaglddr 50
                     + iG+ sG+ t +l+ ++ + ++ g++v +dh p+           +ee ++++++ ++d++
       KKY21594.1 20 LDIGSGSGYLTHVLANLIGDGDTeGKVVGLDHIPElvdlansnmgkSEEGRKMLETGKYDAI 81
                     579*****************9999*********98887777777764445555555333332 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.6e-05     0.059      27      52 ..      12      37 ..       5      71 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.6e-05
                -GGTTSEEEEES-TTTCCHHHHHCC- CS
      RrnaAD 27 nleekltvleigpGkGilTeeLakra 52
                +l +k  vl+ig+G G lT  La+ +
  KKY21594.1 12 YLHPKARVLDIGSGSGYLTHVLANLI 37
                46799*****************9976 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0    0.0001      0.13      18      56 ..      12      53 ..       3      95 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0001
                -S-TT-EEEECT-TTSHHHHHHCCT.T....-SEEEEEESSS CS
        FtsJ 18 lfkpgktvvDlgaaPGgwsqvllqrlga...kgkvvavDlqp 56
                 ++p  +v+D+g++ G  + vl++ +g    +gkvv++D  p
  KKY21594.1 12 YLHPKARVLDIGSGSGYLTHVLANLIGDgdtEGKVVGLDHIP 53
                578999********************876666******9765 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00028      0.36      15      45 ..       6      35 ..       2      40 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00028
      DUF938 15 levLksylakttervLEiasGtGqHAvffAp 45
                +e L++yl  + + vL+i+sG+G     +A+
  KKY21594.1  6 AESLLQYLHPKAR-VLDIGSGSGYLTHVLAN 35
                67899******95.*********87666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1079.05
//
Query:       KKY21595.1  [L=1625]
Description: putative dna repair protein rad18 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-42  145.9   0.5    5.8e-42  143.4   0.0    2.6  3  DEAD           DEAD/DEAH box helicase
    2.8e-27   95.3   0.4    3.1e-26   91.9   0.3    2.8  2  Helicase_C     Helicase conserved C-terminal domain
      4e-24   85.3   0.0    1.1e-21   77.3   0.0    2.6  2  SMC_N          RecF/RecN/SMC N terminal domain
    1.1e-11   45.7  32.9    1.1e-11   45.7  32.9    5.4  3  AAA_23         AAA domain
    1.4e-09   38.1  10.5    1.4e-09   38.1  10.5    3.1  2  AAA_15         AAA ATPase domain
    9.9e-05   22.3  14.4      0.028   14.2   7.1    4.3  2  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
     0.0004   20.1   0.0     0.0016   18.1   0.0    2.1  2  AAA_29         P-loop containing region of AAA domain
     0.0039   17.2   3.5     0.0039   17.2   3.5    6.5  7  TPR_MLP1_2     TPR/MLP1/MLP2-like protein
  ------ inclusion threshold ------
      0.083   12.9   0.1        1.1    9.3   0.0    2.6  2  QSregVF        Putative quorum-sensing-regulated virulence fa
        0.1   12.9   0.1       0.64   10.3   0.0    2.4  2  SMC_hinge      SMC proteins Flexible Hinge Domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       2.1   3.7e+03      18      32 ..     118     132 ..     117     151 .. 0.81
   2 ?   -2.0   0.0       1.5   2.7e+03     126     165 ..    1066    1101 ..    1056    1108 .. 0.74
   3 !  143.4   0.0   3.2e-45   5.8e-42       2     170 ..    1190    1349 ..    1189    1355 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.1
                 EEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxx RF
        DEAD  18 lvaaeTGsGKTlafl 32 
                 +++++ GsGK+++  
  KKY21595.1 118 FICGKNGSGKSAVLT 132
                 578999*****9864 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.5
                  EEETHHHHHHT.TTHHHHHHHHHHSHHHCTTSTTTSEEEEE CS
                  xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  126 VlDEadrlldq.gfsdfinrilnqlpqitcdgklqrqvivl 165 
                   lDE d ++d+ +++  i+ ++++ ++      + rq+i++
  KKY21595.1 1066 CLDEFDVFMDSvNRRMSIELLMSAARRS-----AGRQFILI 1101
                  59*******9988888888888877433.....22345555 PP

  == domain 3  score: 143.4 bits;  conditional E-value: 3.2e-45
                  HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD    2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngv 98  
                  +iQ+e+ip +l+g+d+l++a+ G+GKT+af+ip l+++    ++++++ali++PtreLa qt + +k+++k+++l+v++++gg+  +d++ +l  +v
  KKY21595.1 1190 PIQEETIPVALTGRDILARAKNGTGKTAAFIIPTLERIN--PKNPKTQALILVPTRELALQTSQVCKTLGKHLGLNVMVTTGGTGLKDDIIRLGDTV 1284
                  8*************************************5..588999**********************************************888* PP

                  SEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   99 divvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170 
                  +i+vgtpgr++dl s+g  +ls++ ++V+DEad+ll+ +f + i+++ln         +++rqv+++SAT+p
  KKY21595.1 1285 HIIVGTPGRILDLASKGVADLSECPIFVMDEADKLLSPEFTPVIEQLLNFH-------PKDRQVMLFSATFP 1349
                  *************************************************99.......67899*******98 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.6   2.9e+03      12      50 ..    1229    1271 ..    1220    1278 .. 0.71
   2 !   91.9   0.3   1.7e-29   3.1e-26       4     111 .]    1391    1497 ..    1388    1497 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.6
                  HTTTTSEEEEEESSHH.HHHH...HHHHHHHTTSTEEEESTTS CS
  Helicase_C   12 leeeggkilifvntid.rlek...vklllekkgikvavlhgel 50  
                   ++ + ++li v+t++  l+    +k l ++ g++v v +g +
  KKY21595.1 1229 PKNPKTQALILVPTRElALQTsqvCKTLGKHLGLNVMVTTGGT 1271
                  5678999*********744334456777666688888877765 PP

  == domain 2  score: 91.9 bits;  conditional E-value: 1.7e-29
                  HHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH CS
  Helicase_C    4 eallellkleeeggkilifvntidrlekvklllekk...gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv 97  
                  ++l  l+ ++ + ++++if+n+++r+   +ll +k    g+++ + h+++ q++r++++++f++g ++ L+++d + rGidi+ vn+Vinfd+p+n 
  KKY21595.1 1391 HCLNTLF-SKLQINQSIIFCNSTNRV---ELLAKKItelGYSCFYSHAKMLQSNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNA 1483
                  4445555.889999************...55544445579********************************************************* PP

                  HHHHHHHTTSSSTT CS
  Helicase_C   98 tsyiqriGRtgRag 111 
                  ++y +riGR gR+g
  KKY21595.1 1484 ETYLHRIGRSGRYG 1497
                  ************86 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.0   6.1e-25   1.1e-21       4     196 ..      96    1102 ..      93    1112 .. 0.97
   2 !    5.0   0.0    0.0079        14     155     198 ..    1304    1347 ..    1295    1362 .. 0.87

  Alignments for each domain:
  == domain 1  score: 77.3 bits;  conditional E-value: 6.1e-25
                  EEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEE..SSSSSSC.E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx.x RF
       SMC_N    4 rleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkk..lkiekee.v 97  
                  ++++ nF     k+ +  f + +++i G+NGSGKs +l A+  +LG +++++ r ++l++ i++       ++a++ + ++ne+    l+ e  + +
  KKY21595.1   96 SIQVINFMCH--KNFEFTFGPLINFICGKNGSGKSAVLTALTLCLGGKASSTNRGQSLKNFIKQ-----GEDSASIIVKIKNEGIGayLPDEYGKtI 185 
                  6788888887..7999***********************************************8.....5566677676677766633555544448 PP

                  EEEEEEETTSEEEEEETTEE.....E-HHHHHHHHHCTT-STT...................................................... CS
                  xxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxx...................................................... RF
       SMC_N   98 sisrrvkrkgeseykingke.....vtkkevsellesagiske...................................................... 135 
                   ++r+  ++g+s +ki+ ++      +k ++ e+ e   ++++                                                      
  KKY21595.1  186 IVERHFNKSGTSGFKIKSEKgrivsTRKGDLDEICEFFVFQIDnpmnvlsqdlarqfigssspqekykfymrgiqleqldqdytilqeaianmekrl 282 
                  8999999*********8776222213568999999999999999***************************************************** PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY21595.1  283 elreddiklleerkekarlklqmsdrheslrdrirnyrrqmawaqveeqerivesfddqlqtadhriaeaeaettqfeeafeaahnaasragaaqed 379 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY21595.1  380 vgreiqqaeeekkevksahdaakhelsdfqgqqrairdalkaadtsiaerereianekqrledlhggshgrrlaeldrlkddaesardahkdhqnar 476 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY21595.1  477 aeldddletaetamsekrkpierqreeiekaegllqtmmrnhgaqnnafhermpillreieressfaekpvgpvgnhirllkpewssqlekafgatl 573 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY21595.1  574 ssfivtskrdmeilskimkrvkcelqiligssraidtrphepeesfdtvfralaidndlvknqliiqhgieqtlliadlaqasrvlydgprprnvkr 670 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY21595.1  671 cycihqyekrkgfhltytrdgrgsqdpigefrgrprmktdieiqinlqrdaiqglkrqlsrleeefrgagsqvetckqaitrhkreerelqiasqra 767 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY21595.1  768 ddavdelkeeiekdsvedgrlevleqsleeakeektvnegsyqdsvnaidqakqkllvernrlagmdarleelrskqrrvdaeavrlaqdrknalge 864 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY21595.1  865 knaafsriddakedrarlnrrrqevvdrvadytekasqisgrvnvdpgetptsldkkleklendlrrmqhqsggtreelaieaartheayqtalesv 961 
                  ************************************************************************************************* PP

                  .............................................................................CS-HHHHHHHHHHHHHHHHC CS
                  .............................................................................xxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 .............................................................................lLSgGektLvalaLlfAiqk 155 
                                                                                               +LSgGek+ + + Ll++i +
  KKY21595.1  962 lglkrlgqklnqslaqrkkrwrlfrgyitrraksqfqaflsersfrgkiltnhekklldiqvepditkakssgreakTLSGGEKSFSQICLLLSIWE 1058
                  ************************************************************************************************* PP

                  CS--SEEEECTTTTTS-HHHHHHHHHHHH...HHCTTSEEEEE- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx RF
       SMC_N  156 vkpaplyllDeidaaLDeknvkkvaellk...eksknaQfivis 196 
                  +  + + +lDe+d  +D  n++   ell    ++s   Qfi is
  KKY21595.1 1059 AMGSRIRCLDEFDVFMDSVNRRMSIELLMsaaRRSAGRQFILIS 1102
                  **********************9999998333344558***998 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0079
                  CCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  155 kvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislr 198 
                    +  p++++De d  L  + +  + +ll+ + k+ Q++  s +
  KKY21595.1 1304 DLSECPIFVMDEADKLLSPEFTPVIEQLLNFHPKDRQVMLFSAT 1347
                  56788********************************9988865 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7  32.9     6e-15   1.1e-11       1     194 [.      96     307 ..      96     516 .. 0.74
   2 ?  -18.1  28.6        10   1.8e+04     114     188 ..     735     840 ..     660    1045 .. 0.69
   3 ?   -4.3   0.5        10   1.8e+04      27      35 ..    1210    1218 ..    1210    1219 .. 0.83

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 6e-15
      AAA_23   1 kLkienfrsfrdqeidFskgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkay..veltfenkdgry.......trsi 90 
                 ++++ nf++++++e+ F++ ++ I+G+NG+GK+++l A++l+L+g+++ ++r+    + k+ ++   +g+++a+  v+++ e ++  y       t ++
  KKY21595.1  96 SIQVINFMCHKNFEFTFGPLINFICGKNGSGKSAVLTALTLCLGGKASSTNRGQ---SLKNFIK---QGEDSASiiVKIKNEGIGA-YlpdeygkTIIV 187
                 6899*****************************************998777744...2344443...3444455245555444433.257777656666 PP

      AAA_23  91 ererelskkkgkttkkaklellei....................deleqfise........llgskkiilnlilflgqerfeefel..kdkkerleele 159
                 er +++s ++g ++k +k++++++                    +                 +gs+ ++ ++ +++   + e +++     +e+++++e
  KKY21595.1 188 ERHFNKSGTSGFKIKSEKGRIVSTrkgdldeiceffvfqidnpmN-------VlsqdlarqFIGSSSPQEKYKFYMRGIQLEQLDQdyTILQEAIANME 279
                 666666667777777776666666544443222223333333332.......02222222355555556666666666664222223333444666666 PP

      AAA_23 160 keleeledekkllekleqekekekeleeleeelee 194
                 k le  ed++klle++       ke   l+ ++ +
  KKY21595.1 280 KRLELREDDIKLLEER-------KEKARLKLQMSD 307
                 6666666666666655.......333333333222 PP

  == domain 2  score: -18.1 bits;  conditional E-value: 10
      AAA_23 114 i........deleqfisellgskkiilnlilflgqer...feefelkdkke.....rleelekeleeledekkllekl............eqekekek. 183
                 +        ++ +q i++  ++++++l++ +  +++        +++ +k+     rle le++lee+++ek   e              ++++ +++ 
  KKY21595.1 735 EfrgagsqvETCKQAITR-HKREERELQIASQRADDAvdeL---KEEIEKDsvedgRLEVLEQSLEEAKEEKTVNEGSyqdsvnaidqakQKLLVERNr 829
                 122232232333444443.2444444444443333333331...2211111222456666666666666666543333333344333322222222223 PP

      AAA_23 184 ......eleel 188
                       +leel
  KKY21595.1 830 lagmdaRLEEL 840
                 33333333333 PP

  == domain 3  score: -4.3 bits;  conditional E-value: 10
      AAA_23   27 pNGaGKTTi 35  
                  +NG+GKT+ 
  KKY21595.1 1210 KNGTGKTAA 1218
                  5******86 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1  10.5     8e-13   1.4e-09       4     227 ..      95     372 ..      93     526 .. 0.60
   2 ?    2.7   1.4     0.047        84     153     228 ..     751     826 ..     693     957 .. 0.69

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 8e-13
      AAA_15   4 kkikikNFRslkdveidlseeltvliGkNnsGKSsilealdlFlnnkekkn.................kkvikiekedleifeniseskdikIdvefae 85 
                 ++i++ NF ++k++e  + + +++++GkN+sGKS +l al l l  k +                   +  +ki++e +  +  ++  k+i ++ +f +
  KKY21595.1  95 RSIQVINFMCHKNFEFTFGPLINFICGKNGSGKSAVLTALTLCLGGKASSTnrgqslknfikqgedsaSIIVKIKNEGIGAYLPDEYGKTIIVERHFNK 193
                 589******************************************99444469999999*********999**************************44 PP

      AAA_15  86 kekakeyektlkskekkkadlllkkkesdlkktikdkklklkknelsdekisvekkkskkelpkekeeklekekeelkidkedlkklikkleeslkkee 184
                 ++ +   +k++k +    ++++l+++++ ++  i + +  l+     ++    + + s+   +k+k +++  + e l+ d  +l++ i  +e+ l+  e
  KKY21595.1 194 SGTSGFKIKSEKGRIVSTRKGDLDEICEFFVFQIDNPMNVLS-----QDLAR-QFIGSSSPQEKYKFYMRGIQLEQLDQDYTILQEAIANMEKRLELRE 286
                 466666677777777777777777777755555555555443.....22222.2222233333344444444444444444444444444444443333 PP

      AAA_15 185 ..........................................elknvlksaiiklllisakRnvsd.edsekkssllgklkekile 227
                                                           e ++ + +++++ l   + R ++   ++++ +++++++ +  ++
  KKY21595.1 287 ddiklleerkekarlklqmsdrheslrdrirnyrrqmawaqvEEQERIVESFDDQLQTADHRIAEAeAETTQFEEAFEAAHNAASR 372
                 22222222222222323233222223333333333333333322222222222222222222222212222223333333333333 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.047
      AAA_15 153 eklekekeelkidkedlkklikkleeslkkeeelknvlksaiiklllisakRnvsdedsekkssllgklkekilee 228
                   ++ e+ el+i ++ +++  ++l+e ++k+++ +  l+ + + l+  +++++v++  ++ + ++++++k+k+l e
  KKY21595.1 751 TRHKREERELQIASQRADDAVDELKEEIEKDSVEDGRLEVLEQSLEEAKEEKTVNEGSYQDSVNAIDQAKQKLLVE 826
                 3455566666666666666666666666666644555555555555566666666666666666666666666665 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   7.1   1.6e-05     0.028       1      83 [.     116     199 ..     116     474 .. 0.79
   2 !    9.3   0.3   0.00051      0.92     200     296 ..    1016    1102 ..     849    1103 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.6e-05
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarl..............drdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv 83 
                 +n++ G+NgsGKS +L al l  +               ++ +e++ ++  +             +  e+ +++  +e +++ ++ r++ + + s++
  KKY21595.1 116 INFICGKNGSGKSAVLTALTLCLGGkasstnrgqslknfIKQGEDSASIIVK-------------IKNEGIGAYLPDEYGKTIIVERHFNKSGTSGF 199
                 79*****************999777855554444444444444444444444.............44444444444444444444444444444444 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00051
      AAA_21  200 sdlgegeeliasvderlrergvvflengdgqelparelSdGtkrll..alltallralkkgsllliDEpEngLHPkllrrllellkelsr..ngaQv 292 
                   +l++  ++++ ++  + +             + a  lS G k++   +ll+++++a ++ ++ ++DE++ +++    r  +ell +++r   g Q+
  KKY21595.1 1016 KKLLDIQVEPDITKAKSSG-------------REAKTLSGGEKSFSqiCLLLSIWEAMGS-RIRCLDEFDVFMDSVNRRMSIELLMSAARrsAGRQF 1098
                  4444444444444444444.............455667*******888************.**************99999999997777778999*9 PP

      AAA_21  293 iltT 296 
                  il +
  KKY21595.1 1099 ILIS 1102
                  9876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   8.9e-07    0.0016       3      50 ..      96     142 ..      94     148 .. 0.82
   2 ?   -3.7   0.0       5.8     1e+04      15      36 ..    1194    1216 ..    1192    1218 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 8.9e-07
      AAA_29   3 rlqlvNWgtfdghtieidlkgatlltGpsGsGKSTllDAiqalLvpak 50 
                 ++q++N    ++ ++++ +  + ++ G++GsGKS++l A++  L ++ 
  KKY21595.1  96 SIQVINFMCHKNFEFTFGPL-INFICGKNGSGKSAVLTALTLCLGGKA 142
                 78999998888887888755.7***************99998887665 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5.8
      AAA_29   15 htieidlkg.atlltGpsGsGKS 36  
                  +ti++ l g  +l   ++G+GK+
  KKY21595.1 1194 ETIPVALTGrDILARAKNGTGKT 1216
                  566777777667777799***97 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2  10.7       4.7   8.4e+03      29     115 ..     262     352 ..     257     354 .. 0.75
   2 !    5.8  18.0    0.0074        13       4     109 ..     336     441 ..     333     444 .. 0.68
   3 !   17.2   3.5   2.2e-06    0.0039      60     126 ..     463     529 ..     447     530 .. 0.90
   4 ?    3.4   3.7     0.042        76      58     108 ..     721     774 ..     713     781 .. 0.50
   5 ?   -2.0  15.9       1.9   3.4e+03       2     104 ..     728     833 ..     727     847 .. 0.86
   6 ?   -4.3  14.6        10   1.8e+04       8     118 ..     772     878 ..     765     898 .. 0.76
   7 ?   -0.6   0.9      0.74   1.3e+03       6      43 ..     918     955 ..     912     984 .. 0.51

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.7
  TPR_MLP1_2  29 edlekqaeiakeaqqkYerelvkhaedvkelqalreel...nelkaeiaelkaeaesakaeleeseesweeq.keelekelselekriedl 115
                 e+l +   i++ea  + e+ l + ++d+k l++ +e++    ++ ++ ++l+++  + + +++ ++ + +e+  e+++++l+ +  ri + 
  KKY21595.1 262 EQLDQDYTILQEAIANMEKRLELREDDIKLLEERKEKArlkLQMSDRHESLRDRIRNYRRQMAWAQVEEQERiVESFDDQLQTADHRIAEA 352
                 5677778899999999999**********99999999977767777777777777777777776665544442566777777777777775 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0074
  TPR_MLP1_2   4 ksleeeikslkeekeeaeaklqklqedlekqa...eiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqke 99 
                 +s+++++++++ +++eaea+ ++ +e  e+ +   ++a +aq++  re+++ +e+ ke+   ++ ++ +k e+++++ +  + + +l+++  s++e++ 
  KKY21595.1 336 ESFDDQLQTADHRIAEAEAETTQFEEAFEAAHnaaSRAGAAQEDVGREIQQAEEEKKEV---KSAHDAAKHELSDFQGQQRAIRDALKAADTSIAERER 431
                 57788899999999999998888888777665111566678999999999999888765...5555666666666666666666666666666666666 PP

  TPR_MLP1_2 100 elekelsele 109
                 e+ +e++ le
  KKY21595.1 432 EIANEKQRLE 441
                 6666655554 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 2.2e-06
  TPR_MLP1_2  60 qalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlneqNklLhdQl 126
                 +++r+ +++ ++ +ael +++e+a+++++e+++ +e+q+ee+ek    l++ + +  +qN+  h+++
  KKY21595.1 463 ESARDAHKDHQNARAELDDDLETAETAMSEKRKPIERQREEIEKAEGLLQTMMRNHGAQNNAFHERM 529
                 56778889999*****************************************************986 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.042
  TPR_MLP1_2  58 elqalreelnelkaeiaelkaeaesakael...eeseesweeqkeelekelsel 108
                 ++q l+ +l++l++e + + +++e+ k+++   +++e +++   ++ ++ ++el
  KKY21595.1 721 AIQGLKRQLSRLEEEFRGAGSQVETCKQAItrhKREERELQIASQRADDAVDEL 774
                 455566666666666666666655555443111334444444444444444444 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 1.9
  TPR_MLP1_2   2 elksleeeikslkeekeeaeaklqklqe...dlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeq 97 
                 +l++leee   + ++ e  +++++ +++   +l+  +++a +a +  ++e+ k + +   l+ l + l+e+k+e +  + + ++  ++++++++++  +
  KKY21595.1 728 QLSRLEEEFRGAGSQVETCKQAITRHKReerELQIASQRADDAVDELKEEIEKDSVEDGRLEVLEQSLEEAKEEKTVNEGSYQDSVNAIDQAKQKLLVE 826
                 7899999********99999999999862225777889999999******************************************************9 PP

  TPR_MLP1_2  98 keeleke 104
                 +++l   
  KKY21595.1 827 RNRLAGM 833
                 9998654 PP

  == domain 6  score: -4.3 bits;  conditional E-value: 10
  TPR_MLP1_2   8 eeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekels 106
                 +e+k+  e+++  + +l+ l++ le+ +e+ +  + +Y+  ++   ++ ++l   r++l+ + a+++el+++  ++ a    +   +++ +++   e++
  KKY21595.1 772 DELKEEIEKDSVEDGRLEVLEQSLEEAKEEKTVNEGSYQDSVNAIDQAKQKLLVERNRLAGMDARLEELRSKQRRVDA----EAVRLAQDRKNALGEKN 866
                 556666666777778899999999999999999999***999999999999999999999999999999988666554....44555555555556666 PP

  TPR_MLP1_2 107 elekriedlneq 118
                  + +ri+d +e 
  KKY21595.1 867 AAFSRIDDAKED 878
                 666666665554 PP

  == domain 7  score: -0.6 bits;  conditional E-value: 0.74
  TPR_MLP1_2   6 leeeikslkeekeeaeaklqklqedlekqaeiakeaqq 43 
                 l++++++l+++  + + +    +e+l  +a+++ ea q
  KKY21595.1 918 LDKKLEKLENDLRRMQHQSGGTREELAIEAARTHEAYQ 955
                 44444444444444444444444444444444444433 PP

>> QSregVF  Putative quorum-sensing-regulated virulence factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.5     9e+02      25      71 ..     257     306 ..     250     327 .. 0.76
   2 ?    9.3   0.0   0.00062       1.1      50      88 ..    1430    1468 ..    1415    1487 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.5
                 EESSSSEEEEEEEEETTEEEE...EEEE-HHHHHHHHH-HHHHHHHHHHH CS
     QSregVF  25 rainedildqGytvegnelin...hlsvreahaaqmranpdavrsqlgas 71 
                 r i  + ldq yt+  +++ n    l +re + + + +  ++ r +l  s
  KKY21595.1 257 RGIQLEQLDQDYTILQEAIANmekRLELREDDIKLLEERKEKARLKLQMS 306
                 6788889*******999888744357888888877777777777776655 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00062
                  -HHHHHHHHH-HHHHHHHHHHHHHT-HHHHHHHTTT-EE CS
     QSregVF   50 reahaaqmranpdavrsqlgasvcrnegfrkllakGavl 88  
                    +ha+ +++n + v   + + vcrn    +ll++G  +
  KKY21595.1 1430 FYSHAKMLQSNRNRVFHDFRNGVCRNLVCSDLLTRGIDI 1468
                  568********************************9766 PP

>> SMC_hinge  SMC proteins Flexible Hinge Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00035      0.64       4     116 ..     546     658 ..     543     659 .. 0.71
   2 ?   -1.6   0.0       1.8   3.3e+03      10      27 ..     946     963 ..     942     967 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00035
   SMC_hinge   4 vlGrladlievd.egyekAveaalgnrlqalvvedeetakkiieflkkknagratflpldr..ikqknkadgandknsgavplidlvevdde...lrka 96 
                  +G++++ i++  +++   +e a+g+ l++++v ++ + + + + +k+  +  +++l  ++  i+++++++++  +      ++  +  d+     + +
  KKY21595.1 546 PVGPVGNHIRLLkPEWSSQLEKAFGATLSSFIVTSKRDMEILSKIMKRV-KCELQILIGSSraIDTRPHEPEESFD-----TVFRALAIDNDlvkNQLI 638
                 5899999999988**************************9777666666.88899999976555555555555444.....333333333332012345 PP

   SMC_hinge  97 lryllgdtlvvdsldeAeel 116
                 +++ + +tl+  +l++A ++
  KKY21595.1 639 IQHGIEQTLLIADLAQASRV 658
                 68888888888888888765 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.8
   SMC_hinge  10 dlievdegyekAveaalg 27 
                 +  +  e y++A+e +lg
  KKY21595.1 946 EAARTHEAYQTALESVLG 963
                 56667799********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2002  (0.111663); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                       118  (0.00658152); expected 17.9 (0.001)
Passed Fwd filter:                        58  (0.00323498); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.85u 0.40s 00:00:02.25 Elapsed: 00:00:00.64
# Mc/sec: 7610.26
//
Query:       KKY21596.1  [L=477]
Description: hypothetical protein UCRPC4_g03547 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-31  109.5   0.0    2.6e-31  109.0   0.0    1.3  1  Peptidase_M20  Peptidase family M20/M25/M40
    8.8e-13   48.1   0.0    1.7e-12   47.2   0.0    1.4  1  M20_dimer      Peptidase dimerisation domain
  ------ inclusion threshold ------
      0.011   15.4   0.0       0.02   14.6   0.0    1.4  1  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0   0.0   4.3e-35   2.6e-31       1     205 [.      94     467 ..      94     469 .. 0.89

  Alignments for each domain:
  == domain 1  score: 109.0 bits;  conditional E-value: 4.3e-35
                    EEEEES-BSSTTCGGGSSS.TTSEE.ETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHHHHH.TTTCESE CS
                    xxxxxxxxxxxxxxxxxxx.xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
  Peptidase_M20   1 llgsHlDvVpeeetdgwtt.pfslt.eedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakallegle.erekvda 93 
                    l+++H+Dv+p+ ++dgw t pf+l  +e+++++GrG++d+kg vl++l +++a+k++g++ + ++   f++ EE g++G  ++++ +e +++ +d 
     KKY21596.1  94 LVYGHYDVQPALKSDGWATePFELSiDEKDRMFGRGSTDDKGPVLGWLNVIEAHKKAGVEFPVNLLCCFEGMEEYGSEGLDNFIQ-AEaKKFFADT 188
                    689*******88889**********97779********************************************888********.4435555555 PP

                    EEEEEEESSSBTCHSTETEEEE.......................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxxx.......................................................................... RF
  Peptidase_M20  94 vfelhieepgileagklaigvv.......................................................................... 115
                       + i++  +l   + ++ ++                                                                          
     KKY21596.1 189 DA-VCISDNYWLG--TEKPCLTyglrgcnyygitvsgpgadlhsgvfggtaqepmtdlirvmgklvdtngkiqipginelvapvteeekelyekia 281
                    44.4455444444..43344447788888888888888888888899************************************************* PP

                    ...........................................................................................EEEEE CS
                    ...........................................................................................xxxxx RF
  Peptidase_M20 116 ...........................................................................................kveve 120
                                                                                                               + +v+
     KKY21596.1 282 fkmedlheslgskttifeekeptlmarwrfpslslhgiegafsapgaktvipakvtgkfsirtvpnmeskevtdlvykyindefaklgsknTLDVQ 377
                    ******************************************************************************************77**** PP

                    EEEEESHEEEC.CHHHHHHHHHHHHHHHTSCEEEEEES...SSBHTHHHHTTTEEEEE..EESSGGCTTSTTTEEEHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 121 lleggapvtln.dsplvkalaeaaeelfgekvelivsg...pggtdarffagiptvmi..fgpgsglaHspnEyvdledlekgikvlarll 205
                    l+++g+ ++++  +  + a+ +a++++fg++++++  g   p +  +    g  +v++  +g + ++aHs nE++d +++ +gik+l ++l
     KKY21596.1 378 LIHDGRWWKASpTHWNFTAAGKAVKQVFGVEPDMTREGgsiPVTLTFEEATGK-NVLLlpMGSSTDGAHSINEKLDKRNYIEGIKLLGAYL 467
                    99*********66666*************998888555478888888888887.66443888666*********************99887 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   2.8e-16   1.7e-12       7     106 ..     214     366 ..     208     368 .. 0.94

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 2.8e-16
                 EEEEEE..EE-B-EEGG.-TTTTB-HHHHHHHHHHCSCTTEEC...................................................TCCTC CS
   M20_dimer   7 aggkit..vkgkagHsg.apgagaNAieklarllaeledeegdia..............................................eerslprt 56 
                   + it    g ++Hsg ++g ++ +++ l+r++ +l d++g+i+                                              +  +++ +
  KKY21596.1 214 NYYGITvsGPGADLHSGvFGGTAQEPMTDLIRVMGKLVDTNGKIQipginelvapvteeekelyekiafkmedlheslgskttifeekeptLMARWRFP 312
                 44445544999**************************************************************************************** PP

                 CCCCEECCE-C....CCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSCCS CS
   M20_dimer  57 tlnvtgiegGs....aknvipdeaeakidiRllpgedpeevleeieeilekeap 106
                 +l++ gieg +    ak+vip++++ k++iR++p+++ +ev + + +++++e +
  KKY21596.1 313 SLSLHGIEGAFsapgAKTVIPAKVTGKFSIRTVPNMESKEVTDLVYKYINDEFA 366
                 *************************************************99875 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.4e-06      0.02       2      90 ..      80     187 ..      79     213 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.4e-06
                    EEEEESTTCESEEEEEEEE--B-TTT...............TCC..T---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHH CS
  Peptidase_M28   2 viatlegkatdevlllgAHyDsvgvg...............rgp..ifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEagllGSka 80 
                    via++ ++++++++l+ +HyD  +                 +++     G +D+  +v   L+++++ ++ g +   ++   f + EE+g  G ++
     KKY21596.1  80 VIARYGNDKNKRTILVYGHYDVQPALksdgwatepfelsidEKDrmFGRGSTDDKGPVLGWLNVIEAHKKAGVEFPVNLLCCFEGMEEYGSEGLDN 175
                    899996666588**********99889999*999999999633366668*********************99999********************* PP

                    HHH..HHCCCTT CS
  Peptidase_M28  81 fak..akpelkk 90 
                    f++  ak+  ++
     KKY21596.1 176 FIQaeAKKFFAD 187
                    996533334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3376.72
//
Query:       KKY21597.1  [L=323]
Description: hypothetical protein UCRPC4_g03548 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 1989.26
//
Query:       KKY21598.1  [L=260]
Description: putative fungal transcriptional regulatory protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1633.61
//
Query:       KKY21599.1  [L=586]
Description: hypothetical protein UCRPC4_g03550 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00065   19.2   0.0     0.0013   18.2   0.0    1.5  1  DUF604       Protein of unknown function, DUF604
     0.0014   18.1   0.0     0.0024   17.3   0.0    1.3  1  Fringe       Fringe-like


Domain annotation for each model (and alignments):
>> DUF604  Protein of unknown function, DUF604
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.4e-07    0.0013       9      51 ..     289     334 ..     282     394 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.4e-07
      DUF604   9 mafGGgGfaiSyplakaLakvldeClerYp...klygsddriqaCl 51 
                  a+GGgG+++S   +++++k +deC+  Y+   +  g d+ri  C 
  KKY21599.1 289 WAHGGGGIILSAFTVSQISKHFDECVAEYSpdiEPLGGDHRIFLCA 334
                 69***************************74334579999999994 PP

>> Fringe  Fringe-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.7e-07    0.0024      83     163 ..     235     306 ..     210     322 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.7e-07
      Fringe  83 leskkkWfchvDDDnyl..nveaLlklLskynhtqdvylGkpsldrpieaterteenkkkkvkfwfatGGaGfclsralalkl 163
                 +++ ++Wf+ +DDD++l   ++ + + Ls+ ++++  ++G ps + + +             +  +a+GG+G++ls   + ++
  KKY21599.1 235 YTDTHSWFVYLDDDTFLpnTLPLIAERLSHLDPNKPYFIGSPSDSALQTFN-----------HGGWAHGGGGIILSAFTVSQI 306
                 445679**********95345778899****************88887772...........225789999999998877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.50
# Mc/sec: 3512.09
//
Query:       KKY21600.1  [L=467]
Description: putative camp-dependent protein kinase regulatory subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-41  140.1   0.0    4.3e-20   71.6   0.0    3.2  3  cNMP_binding  Cyclic nucleotide-binding domain
    1.4e-13   50.3   2.0    2.7e-13   49.3   2.0    1.5  1  RIIa          Regulatory subunit of type II PKA R-subunit


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.062   5.6e+02      38      71 ..      57      93 ..      47      93 .. 0.73
   2 !   63.5   0.0   1.6e-21   1.4e-17       7      88 ..     236     325 ..     234     326 .. 0.92
   3 !   71.6   0.0   4.8e-24   4.3e-20       2      86 ..     362     443 ..     361     444 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.062
                  .E.EEEEEE-TTEE.ESHHHHH.HTS--SSEEEESST CS
  cNMP_binding 38 ke.vvlavlgpGdl.fGelall.tgeprtatvvAltd 71
                  k+ ++ +   pG + fG  +++ + ++r   ++A +d
    KKY21600.1 57 KNnKMAGSAFPGTMsFGSNNVFgDSTKRNPHAIAEED 93
                  44256668899*999*******544558888888875 PP

  == domain 2  score: 63.5 bits;  conditional E-value: 1.6e-21
                   T-EEE-TTSB-SEEEEEEES-EEEE.......EEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESST.EEEEEEEHHHHHHHHHH CS
  cNMP_binding   7 gevifrqGdpadslyivlsGevrvy.......rlsedgkevvlavlgpGdlfGelalltgeprtatvvAltd.sellalprddflellqq 88 
                   +  ++ qGd++d++y+v++Ge+ +y       ++ +dg  + +a++gpG  fGelal++++pr+atvv+++  ++l+al+r +f+++l++
    KKY21600.1 236 NIRVIVQGDAGDYFYVVEKGEFDIYinpsgsvQSGADGLGNKVATIGPGGAFGELALMYNAPRAATVVSKEGkCTLWALDRITFRRILMD 325
                   567999*******************8888888888888888*****************************888**************986 PP

  == domain 3  score: 71.6 bits;  conditional E-value: 4.8e-24
                   EEE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHH CS
  cNMP_binding   2 rsfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflell 86 
                   ++f+ag+ i+ +Gdp+d +y+++sGe++ +   + g e+ ++ +++Gd+fGelall+++pr+a+v+A+t +++++l+r+ f++ll
    KKY21600.1 362 VKFPAGSKIINEGDPGDAFYLLESGEAEAF---KAGVEKPVKAYSRGDYFGELALLDDKPRAASVIAKTSVKVARLDREGFKRLL 443
                   68***************************6...778888*******************************************997 PP

>> RIIa  Regulatory subunit of type II PKA R-subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   2.0   3.1e-17   2.7e-13       2      37 ..       6      42 ..       5      43 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 3.1e-17
                THHHHHHHHHHHHHHH--S-HHHHHHHHH.HHHHHHH CS
        RIIa  2 glqaLLedltveVlraqPsDvlqFaadYF.ekLeeeR 37
                ++q++L++l++e+++aqP+DvlqF+a++F  +Le++R
  KKY21600.1  6 SYQNELNALNREIAKAQPDDVLQFCANFFlRRLEAQR 42
                79**********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 2781.94
//
Query:       KKY21601.1  [L=375]
Description: putative ammecr1 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-40  137.5   0.0    5.6e-40  136.7   0.0    1.4  1  AMMECR1        AMMECR1
  ------ inclusion threshold ------
       0.02   15.6   2.3      0.041   14.6   2.3    1.5  1  FYDLN_acid     Protein of unknown function (FYDLN_acid)
      0.023   14.8   2.6      0.036   14.2   2.6    1.2  1  YL1            YL1 nuclear protein
        0.1   12.9   5.1        0.2   12.1   5.1    1.4  1  PBP1_TM        Transmembrane domain of transglycosylase PBP1 
       0.15   12.7   7.9        0.8   10.4   3.6    2.2  2  Pex14_N        Peroxisomal membrane anchor protein (Pex14p) c
        1.1    8.0  12.6       0.49    9.2   5.0    2.0  2  Apt1           Golgi-body localisation protein domain
        2.1    6.0   8.4        3.6    5.3   8.4    1.3  1  PI3K_1B_p101   Phosphoinositide 3-kinase gamma adapter protei
        9.7    5.4   6.4         16    4.7   6.4    1.3  1  NOA36          NOA36 protein


Domain annotation for each model (and alignments):
>> AMMECR1  AMMECR1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.7   0.0   2.5e-43   5.6e-40      28     156 ..     142     292 ..      96     301 .. 0.81

  Alignments for each domain:
  == domain 1  score: 136.7 bits;  conditional E-value: 2.5e-43
                 S............EEEEEEEEE...EE......CCECCCECEEEEEEHHHHHHHHHHHHHHT-TTS----HHHHTTEEEEEEEE---EE--.GGG--TT CS
     AMMECR1  28 e............kaglFVtlk...ekkg....eLRGCiGtleperpLaeevaenAlaaAfeDpRFspvtaeElpeleveVsvLtepepiv.ledlevg 106
                 +            ++++FVt++   +  +    +LRGCiGt++ + pL +++  +Al++Af D+RFsp+ ++ lp+l++++++L +++ ++ + d+e+g
  KKY21601.1 142 SyssaltsrppepSYPIFVTWNtisQ--RssskHLRGCIGTFD-PLPLSRGLETYALTSAFDDHRFSPIPSSLLPQLSCSITLLADFTTCSnPLDWELG 237
                 03334444677778********7641..14566**********.9*********************************************55777**** PP

                 T-EEEEE.ET.....TEEEEE-THHHHHTT--HHHHHHHHHHHHTS-TTC.CCSTTS CS
     AMMECR1 107 khGliie.kg.....srsatlLPqvaveqgwdkeeflasllrKaglrpde.wkdsei 156
                 +hG+ i+  +     ++ at+LP+vaveqgw+kee+++sl+rKag+++++  +  + 
  KKY21601.1 238 THGIRISfANksktrRYGATYLPDVAVEQGWTKEETVESLMRKAGWDGNTrTS--SS 292
                 ******9754567779*******************************965232..33 PP

>> FYDLN_acid  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   2.3   1.8e-05     0.041      24     100 ..      15      86 ..      12      97 .. 0.51

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.8e-05
  FYDLN_acid  24 kdPivcpkcgeefepeevlksraaaaeaeea....kkkkeeeedeedeeeeedvsdedadeeeeedddddvdleedddddv 100
                  +P+ c +c e+ + +    s+ ++ ++ e+     +++++  + ed+  +++v+ ed+dee +++ d        d+dd 
  KKY21601.1  15 ASPAYCLYCFETLSASFE-GSEPPRLAKVEElwnaYQEATNPLTVEDDMGTDNVESEDDDEEIDSSSD--------DNDDG 86 
                 68*******999988877.3333333333331001233333444444445555555555555444444........33332 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   2.6   1.6e-05     0.036      28     108 ..      49     125 ..      34     174 .. 0.42

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.6e-05
                 xxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  28 FaE......eedDeefeseeeeeeeensDsdfdsdeedeesdeeedeeegekele.rqerkkrkkekkkrkaqkkkskkkkkkqkkkk 108
                 ++E       edD +  + e+e++    D+++ds+++d+++ +eed       +  r +r+k ++  + r  ++ +s+ + ++++++ 
  KKY21601.1  49 YQEatnpltVEDDMGTDNVESEDD----DEEIDSSSDDNDDGQEEDV------ITpRSKRSKPATL-QSRSISRLQSTDTPSSSASST 125
                 555555555667777776666544....5566677766554444443......2212222222111.222222223333222222222 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   5.1   8.9e-05       0.2      32      70 ..      69     107 ..      57     113 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.9e-05
     PBP1_TM  32 dddyddeyddeedDdddddeeeevprkgkkkkpprkkrr 70 
                  +d d+e+d ++dD+dd +ee++++ ++k++kp   ++r
  KKY21601.1  69 SEDDDEEIDSSSDDNDDGQEEDVITPRSKRSKPATLQSR 107
                 4555889*****************999999998766555 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.6   0.00036       0.8      36     116 ..      73     162 ..      71     179 .. 0.46
   2 ?    4.3   0.1     0.027        60      36      90 ..     271     328 ..     266     361 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00036
     Pex14_N  36 qeEIeeaLkraereeease..sa.vaassas.eqaqeesasssatpqpqaasqtsqsspspsppaqqqqqqy......rpPivtypefltk 116
                 +eEI+   +++++ +e+++  ++ +++++a+ ++ + ++ +s+ tp+++a+s+ts  +++p+++a+ +q++y      rpP   yp f+t 
  KKY21601.1  73 DEEIDSSSDDNDDGQEEDVitPRsKRSKPATlQSRSISRLQSTDTPSSSASSTTSLFTSTPNSSAS-SQTSYssaltsRPPEPSYPIFVTW 162
                 688888888844444444443211222222232223333334444444444444333333332222.222223555666666666666554 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.027
     Pex14_N  36 qeEIeeaLkraereeeasesavaassas.....eqa..qeesasssatpqpqaasqtsqssp 90 
                 +e +e ++++a+ + ++++s++++s  +     ++       +ss+a+++p+ +s++s+s++
  KKY21601.1 271 EETVESLMRKAGWDGNTRTSSSSSS--TygvgvAKRllR--GSSSNASSSPPDPSNSSTSKQ 328
                 3446666666665555544321222..123444333532..334444444444444443333 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   5.0   0.00022      0.49     316     390 ..      68     142 ..      22     202 .. 0.52
   2 ?    3.9   0.8     0.009        20     333     391 ..     284     342 ..     245     364 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00022
        Apt1 316 eddesdeesessssss.....ssssssassssssssrssslelrlkptsstssssssessssssskkrsseesslessas 390
                 e++++dee++sss+ +     ++  + +s++s+  + +s++ +rl++t++ sss   +ss++s++ ++ +  ss++s++s
  KKY21601.1  68 ESEDDDEEIDSSSDDNddgqeEDVITPRSKRSKPATLQSRSISRLQSTDTPSSS---ASSTTSLFTSTPN--SSASSQTS 142
                 222222222222221122233333333333333333333333344433222222...2222222211111..12222221 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.009
        Apt1 333 sssssassssssssrssslelrlkptsstssssssessssssskkrsseesslessase 391
                 + ++++ssssss+ + +  ++ l+ +ss+ sss+++ s+ss+sk+  ++++++++ ++ 
  KKY21601.1 284 DGNTRTSSSSSSTYGVGVAKRLLRGSSSNASSSPPDPSNSSTSKQYVWDTDEVSNFKTV 342
                 34444555555555555555556666888889999999999999999999988877665 PP

>> PI3K_1B_p101  Phosphoinositide 3-kinase gamma adapter protein p101 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   8.4    0.0016       3.6     309     397 ..      54     141 ..      42     172 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0016
  PI3K_1B_p101 309 speeledeeeedeedvdeeedleeeeeeeeedslarsstlstvsssskdsmlsllslsssslassvsslssgvdsdyvedsdesssssp 397
                   +p + ed++ +d+++ + ++d e +++++++d  +++ ++   s+ sk ++l++ s+s+ +++   ss +s++ s ++   + s ss++
    KKY21601.1  54 NPLTVEDDMGTDNVESE-DDDEEIDSSSDDNDDGQEEDVITPRSKRSKPATLQSRSISRLQSTDTPSSSASSTTSLFTSTPNSSASSQT 141
                   55555555555555422.22222222233333444555666666666666666666666666665555555555544444333333333 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   6.4    0.0072        16     256     300 ..      46      90 ..      31      98 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0072
       NOA36 256 ydaylkalasgddeddegdedddddddeedddeeeddedeeeeee 300
                 ++ay++a++  + edd g ++ + +dd+e+ d+  dd+d+ +ee+
  KKY21601.1  46 WNAYQEATNPLTVEDDMGTDNVESEDDDEEIDSSSDDNDDGQEED 90 
                 566666666656666666666555555555554444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       985  (0.0549389); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 2326.77
//
Query:       KKY21602.1  [L=245]
Description: putative methyltransferase domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-14   54.5   0.0    4.1e-13   49.8   0.0    2.1  2  Methyltransf_11  Methyltransferase domain
    5.1e-14   52.7   0.0    3.4e-13   50.1   0.0    2.0  2  Methyltransf_25  Methyltransferase domain
    2.6e-08   34.5   0.0    6.6e-08   33.2   0.0    1.6  2  Methyltransf_12  Methyltransferase domain
      5e-08   32.9   0.0    8.7e-08   32.1   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
      0.007   16.2   0.0      0.012   15.5   0.0    1.3  1  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   1.2e-16   4.1e-13       1      91 [.       5      98 ..       5      99 .. 0.92
   2 ?    2.6   0.0     0.059   2.1e+02      29      66 ..     192     231 ..     172     242 .. 0.70

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 1.2e-16
                     EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCC..TS.S-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11  1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl.kvefvvadaek..lp.fednsfDlvvssevlhhvedpekalkeiaRvLkpg 91
                     +dvGcG G+ +++la  + + +g+D s++m+++a+++  ++++  + f va  e+  lp +e +s+Dl++s ++ h++ d++k++k +a  L+pg
       KKY21602.1  5 VDVGCGPGKATQDLAPLFDTAIGTDHSQAMIEVARSADYKAKNgPIHFAVAAGEDfdLPgLEPGSVDLITSAMAAHWF-DMAKFWKGAATALQPG 98
                     59***********************************99999997888888888644866999***************.7*************98 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.059
                      HHHHHHHHHCCHHT-..EEEETTEECCCT.SS-TT-EEEEE CS
  Methyltransf_11  29 emlklakekaseegl..kvefvvadaekl.pfednsfDlvv 66 
                       m+++++e+ +e+ +    ++v+ ++++l ++ d++fD+ +
       KKY21602.1 192 SMVTRWREAHPEA-VgtDQDCVKLTITRLkKVMDGKFDFQI 231
                      3444444444443.2576699*******988*******865 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   9.6e-17   3.4e-13       2      96 ..       5      98 ..       5      98 .. 0.87
   2 ?    0.2   0.0      0.36   1.3e+03      31      73 ..     191     235 ..     181     244 .. 0.68

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 9.6e-17
                     EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHH.TTTTEEEEESBCCGBS...SSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25  2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraee.eglnvefvqgdaedlp...fedgsfDlvvssgalhhlsdedlekalkeiarvL 93
                     +d+GcG+G+ t++la  +   + +g+D s++m+e ar+   + ++  ++f ++  ed++   +e gs+Dl++s++a h+++   ++k+ k +a +L
       KKY21602.1  5 VDVGCGPGKATQDLAPLF--DTAIGTDHSQAMIEVARSADYKaKNGPIHFAVAAGEDFDlpgLEPGSVDLITSAMAAHWFD---MAKFWKGAATAL 95
                     69***************9..9****************765552555*********9976336699********98888886...8899******99 PP

                     EEE CS
  Methyltransf_25 94 kpg 96
                     +pg
       KKY21602.1 96 QPG 98
                     998 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.36
                      HHHHHHHHHHHHHTTT..TEEEEESBCCGBS.SSTTTEEEEEEEST CS
  Methyltransf_25  31 eemleaareraeeegl..nvefvqgdaedlp.fedgsfDlvvssga 73 
                      ++m+ + re + e+ +  + ++v+  +++l+   dg+fD+ + +g+
       KKY21602.1 191 ASMVTRWREAHPEA-VgtDQDCVKLTITRLKkVMDGKFDFQIGAGV 235
                      46677777666542.2347778888888886458889998776655 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   1.8e-11   6.6e-08       1      96 [.       5      98 ..       5      98 .. 0.86
   2 ?   -2.8   0.0         3   1.1e+04      37      60 ..     198     221 ..     190     239 .. 0.50

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.8e-11
  Methyltransf_12  1 LeiGcGtGsllralleklpdieytgvDispsai..edakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94
                     +++GcG G  ++ l++   + + +g+D s+++i  ++ +   ak+++ ++++   e+ dl  l++g s+Dl++++ + h++ d++++++ ++ +L 
       KKY21602.1  5 VDVGCGPGKATQDLAPL--FDTAIGTDHSQAMIevARSADYKAKNGPIHFAVAAGEDFDLPGLEPG-SVDLITSAMAAHWF-DMAKFWKGAATALQ 96
                     69***************..**************666666667777777777777777777777776.*************6.***********999 PP

  Methyltransf_12 95 pg 96
                     pg
       KKY21602.1 97 PG 98
                     98 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3
  Methyltransf_12  37 keklakrennnnnnvelealdlld 60 
                      +e + +  + + ++v+l+ + l +
       KKY21602.1 198 REAHPEAVGTDQDCVKLTITRLKK 221
                      444444445555555555444433 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   2.4e-11   8.7e-08       7     104 ..       4      98 ..       2     120 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 2.4e-11
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielAre..naqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeie 98 
                      ++D+GCG G+ t  la +  +  + +G D s+ +ie+Ar+    +k+g   + + +g+ ++l+  le+ ++Dli+s +  ++  d++k+ +++ 
       KKY21602.1   4 YVDVGCGPGKATQDLAPLF-D--TAIGTDHSQAMIEVARSadYKAKNGPIHFAVAAGEDFDLPG-LEPGSVDLITS-AMAAHWFDMAKFWKGAA 92 
                      78**************654.3..599**************665666777777777777777776.799*****999.57789999999999999 PP

  Methyltransf_31  99 rvlkpg 104
                       +l+pg
       KKY21602.1  93 TALQPG 98 
                      999886 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.3e-06     0.012      25      96 ..       3      83 ..       2     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.3e-06
  Methyltransf_23 25 rvLdiGcGtGillevlrengfsvtgvDlspeaveiae.........kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvp 96
                     +++d+GcG G  ++ l++ + + +g D s +++e a+          +++a+   +d +    + g+ dlI++ +  ++++
       KKY21602.1  3 EYVDVGCGPGKATQDLAPLFDTAIGTDHSQAMIEVARsadykakngPIHFAVAAGEDFDLPGLEPGSVDLITSAMAAHWFD 83
                     579****************99***************986666655533333333333333333556888888888877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1635.04
//
Query:       KKY21603.1  [L=565]
Description: putative ankyrin repeat containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-21   77.3   1.7    9.2e-09   35.8   0.1    3.4  3  Ank_2     Ankyrin repeats (3 copies)
    8.8e-18   64.4   2.0    1.6e-05   25.4   0.1    4.4  4  Ank_4     Ankyrin repeats (many copies)
    2.2e-16   59.4  10.7    0.00012   22.4   0.0    4.5  4  Ank       Ankyrin repeat
    1.3e-15   55.9   3.6     0.0037   17.6   0.0    5.2  5  Ank_3     Ankyrin repeat
    7.9e-15   54.7   4.4     0.0095   16.2   0.1    5.6  6  Ank_5     Ankyrin repeats (many copies)
     0.0059   17.1   0.0       0.63   10.6   0.1    2.6  2  DUF1843   Domain of unknown function (DUF1843)
  ------ inclusion threshold ------
       0.46   10.8  13.1       0.11   12.8   2.4    3.0  2  DUF3446   Early growth response N-terminal domain


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2   3.8e-07   0.00098       3      53 ..      26      85 ..      22      96 .. 0.68
   2 !   35.8   0.1   3.6e-12   9.2e-09      23      66 ..      98     151 ..      82     153 .. 0.77
   3 !   19.7   0.0   3.8e-07   0.00097      21      62 ..     245     290 ..     220     307 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.8e-07
       Ank_2  3 lAakn.gnlelvklLl.eg....adpn.k.ngktaLhyAakngnleivklLle..h..adndg 53
                +Aa++ g   lvk +l ++    ++p+ k + +t Lh+Aa++g lei++ L++  h  +d ++
  KKY21603.1 26 IAANDlG---LVKRILkNNpaylTNPDfKdKSNTSLHLAAQYGFLEICEHLIAlgHdsTDLNN 85
                5666557...88888853345555555534778999999999999999999985546544333 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 3.6e-12
       Ank_2  23 n...k.ngktaLhyAakngnleivklLleh.......adndgrtpLhyAarsghl 66 
                 +   + +g+t+Lh+A+ n ++ +vklL ++       ad +g+tpL++Aar gh+
  KKY21603.1  98 GvshNtDGRTPLHLACANSHTAVVKLLGAKfpecinrADASGMTPLMLAAR-GHP 151
                 2322259*********************9677787777799*********6.886 PP

  == domain 3  score: 19.7 bits;  conditional E-value: 3.8e-07
       Ank_2  21 dpnkngktaLhyAakngnleivklLleh......adndgrtpLhyAar 62 
                 d  + g+taLh+A  +gnl+++++L+ +       +++g+tp  y+++
  KKY21603.1 245 D--HSGNTALHHASASGNLKALRALVVAgadplaKNCSGWTPESYSVS 290
                 2..267888888888888888888887554555444888888777765 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   3.2e-05     0.082       4      54 ..      21      73 ..      19      74 .. 0.78
   2 !   17.2   0.0   2.3e-06    0.0058      32      54 ..     102     124 ..      84     125 .. 0.81
   3 !   25.4   0.1   6.2e-09   1.6e-05       1      46 [.     105     150 ..     105     156 .. 0.88
   4 !   21.4   0.0   1.1e-07   0.00029       2      38 ..     249     284 ..     236     290 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.2e-05
       Ank_4  4 aLhyaaisgrlelvrlLlekgadinaqdn....rsGetalhiAakrgnveilklL 54
                 L +a+++++l lv+++l +++      n    +  +t lh Aa+ g++ei + L
  KKY21603.1 21 RLRRAIAANDLGLVKRILKNNPAYLT--NpdfkDKSNTSLHLAAQYGFLEICEHL 73
                5899**************77554333..333555599************998755 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 2.3e-06
       Ank_4  32 nrsGetalhiAakrgnveilklL 54 
                 n +G+t+lh A+ +++  ++klL
  KKY21603.1 102 NTDGRTPLHLACANSHTAVVKLL 124
                 779******************98 PP

  == domain 3  score: 25.4 bits;  conditional E-value: 6.2e-09
       Ank_4   1 eltaLhyaaisgrlelvrlLlekgad.inaqdnrsGetalhiAakrg 46 
                 ++t+Lh a++ +++ +v+lL +k ++ in+ +++sG+t+l  Aa++ 
  KKY21603.1 105 GRTPLHLACANSHTAVVKLLGAKFPEcINR-ADASGMTPLMLAARGH 150
                 589******************999996666.5***********9875 PP

  == domain 4  score: 21.4 bits;  conditional E-value: 1.1e-07
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGeta 38 
                 +taLh+a +sg+l+++r L+  gad+ a  n sG+t+
  KKY21603.1 249 NTALHHASASGNLKALRALVVAGADPLAK-NCSGWTP 284
                 68888888888888888888888888887.8888888 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.2   0.00013      0.32       3      30 ..      55      86 ..      54      88 .. 0.81
   2 !   22.4   0.0   4.5e-08   0.00012       1      25 [.     104     126 ..     104     136 .. 0.82
   3 !   11.6   0.0   0.00012       0.3       2      15 ..     139     151 ..     138     163 .. 0.84
   4 !   17.9   0.8   1.2e-06     0.003       2      32 .]     248     279 ..     247     279 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
                BBHHHHHHHHTTHHHHHHHH...T.TTSTTCB CS
         Ank  3 nTPLHlAatngkkriiklLL...h.GAnlnal 30
                nT LHlAa++g ++i++ L+   h + +ln +
  KKY21603.1 55 NTSLHLAAQYGFLEICEHLIalgHdSTDLNNK 86
                789****************8756534788866 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 4.5e-08
                 TSBBHHHHHHHHTTHHHHHHHHTTT CS
         Ank   1 dGnTPLHlAatngkkriiklLLhGA 25 
                 dG+TPLHlA+ n ++ ++kl L GA
  KKY21603.1 104 DGRTPLHLACANSHTAVVKL-L-GA 126
                 8*********9999*****5.5.65 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00012
                 SBBHHHHHHHHTTH CS
         Ank   2 GnTPLHlAatngkk 15 
                 G+TPL+lAa +g++
  KKY21603.1 139 GMTPLMLAA-RGHP 151
                 9********.6874 PP

  == domain 4  score: 17.9 bits;  conditional E-value: 1.2e-06
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 GnT+LH A+  g++  +++L+  GA++ a+++
  KKY21603.1 248 GNTALHHASASGNLKALRALVvAGADPLAKNC 279
                 9*******9889999******9*******985 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.4   3.5e+03       7      26 ..      23      42 ..      20      45 .. 0.80
   2 !   14.2   0.0   1.9e-05     0.047       3      25 ..      55      79 ..      53      84 .. 0.83
   3 !   17.6   0.0   1.5e-06    0.0037       1      21 [.     104     124 ..     104     130 .. 0.91
   4 ?    4.8   0.0     0.023        58       2      11 ..     139     148 ..     138     155 .. 0.89
   5 !   15.7   0.0   6.3e-06     0.016       2      29 ..     248     274 ..     247     276 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.4
       Ank_3  7 hlAarsgnleivkfLlenkg 26
                 +A+ +++l +vk +l+n+ 
  KKY21603.1 23 RRAIAANDLGLVKRILKNNP 42
                57999999999*****9765 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.9e-05
       Ank_3  3 etpLhlAarsgnleivkfLle..nk 25
                +t LhlAa +g lei++ L+   + 
  KKY21603.1 55 NTSLHLAAQYGFLEICEHLIAlgHD 79
                89******************94444 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 1.5e-06
       Ank_3   1 nGetpLhlAarsgnleivkfL 21 
                 +G+tpLhlA+ + ++++vk+L
  KKY21603.1 104 DGRTPLHLACANSHTAVVKLL 124
                 69**************99988 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.023
       Ank_3   2 GetpLhlAar 11 
                 G+tpL+lAar
  KKY21603.1 139 GMTPLMLAAR 148
                 99*******8 PP

  == domain 5  score: 15.7 bits;  conditional E-value: 6.3e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G+t+Lh+A  sgnl+ +++L+   gad+
  KKY21603.1 248 GNTALHHASASGNLKALRALVV-AGADP 274
                 9********************9.89998 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0       0.2   5.1e+02      23      44 ..      25      47 ..      22      54 .. 0.79
   2 !   14.7   0.0   1.2e-05      0.03      15      39 ..      53      77 ..      47      86 .. 0.87
   3 !   15.1   0.2   8.2e-06     0.021      14      56 .]     103     146 ..      97     146 .. 0.85
   4 !    7.3   0.0    0.0023       5.9       9      27 ..     132     150 ..     126     154 .. 0.82
   5 !   16.2   0.1   3.7e-06    0.0095      12      52 ..     244     284 ..     239     284 .. 0.93
   6 ?   -3.1   0.0       4.2   1.1e+04      13      28 ..     344     359 ..     343     361 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.2
       Ank_5 23 AakygaadvvrlLl.argadlnl 44
                A+ ++ + +v+++l +++a l+ 
  KKY21603.1 25 AIAANDLGLVKRILkNNPAYLTN 47
                8999**********777765555 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.2e-05
       Ank_5 15 ggntpLhvAakygaadvvrlLlarg 39
                ++nt Lh+Aa yg +++++ L+a g
  KKY21603.1 53 KSNTSLHLAAQYGFLEICEHLIALG 77
                689******************9655 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 8.2e-06
       Ank_5  14 gggntpLhvAakygaadvvrlLl.argadlnltdsrGltaldlA 56 
                  +g tpLh+A+ + +  vv+lL  ++++ +n  d++G t+l lA
  KKY21603.1 103 TDGRTPLHLACANSHTAVVKLLGaKFPECINRADASGMTPLMLA 146
                 4566**************99999999999999999999998665 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0023
       Ank_5   9 vnrldgggntpLhvAakyg 27 
                 +nr d  g+tpL++Aa+++
  KKY21603.1 132 INRADASGMTPLMLAARGH 150
                 5788889*********954 PP

  == domain 5  score: 16.2 bits;  conditional E-value: 3.7e-06
       Ank_5  12 ldgggntpLhvAakygaadvvrlLlargadlnltdsrGlta 52 
                 +d  gnt+Lh+A+  g++  +r L+  gad+ +++ +G+t+
  KKY21603.1 244 QDHSGNTALHHASASGNLKALRALVVAGADPLAKNCSGWTP 284
                 67789**********************************98 PP

  == domain 6  score: -3.1 bits;  conditional E-value: 4.2
       Ank_5  13 dgggntpLhvAakyga 28 
                 d+ g +pL++++++++
  KKY21603.1 344 DRQGSEPLIQSSRARR 359
                 778899***9999776 PP

>> DUF1843  Domain of unknown function (DUF1843)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.04     1e+02       7      32 ..      22      47 ..      20      50 .. 0.87
   2 !   10.6   0.1   0.00025      0.63       6      32 ..     251     277 ..     249     279 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.04
     DUF1843  7 iqqAiasGDLakMKalaaqaeqqLae 32
                + +Aia +DL   K ++++  ++L +
  KKY21603.1 22 LRRAIAANDLGLVKRILKNNPAYLTN 47
                578*************9999888876 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00025
     DUF1843   6 aiqqAiasGDLakMKalaaqaeqqLae 32 
                 a++ A asG L+ ++al+ +    La+
  KKY21603.1 251 ALHHASASGNLKALRALVVAGADPLAK 277
                 9****************9887777765 PP

>> DUF3446  Early growth response N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.4   4.3e-05      0.11      38      86 ..     193     238 ..     174     239 .. 0.61
   2 ?    1.9   3.2      0.11   2.7e+02      41      62 ..     433     454 ..     421     472 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.3e-05
     DUF3446  38 sssssssssssssssspslscsvaaqqsselehiYsaaPtYsscsgdly 86 
                 +  sss sss    ++++ls+   +++ + +eh++   Pt++s+s+ l+
  KKY21603.1 193 A-FSSSKSSSHYNVNQSTLSQIP-SSNAATMEHLFR-LPTFTSSSPTLF 238
                 2.233333344444444444444.556799******.******999998 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.11
     DUF3446  41 ssssssssssssspslscsvaa 62 
                 +s+sss++s s+s  ls+  ++
  KKY21603.1 433 ASHSSSATSGSGSTDLSSGSSR 454
                 4444444444445554443322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3587.93
//
Query:       KKY21604.1  [L=324]
Description: putative carbohydrate esterase family 4 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-16   59.2   0.0      6e-16   58.5   0.0    1.4  1  Polysacc_deac_1  Polysaccharide deacetylase
  ------ inclusion threshold ------
       0.02   14.6   0.0       0.12   12.0   0.0    2.1  1  DUF2334          Uncharacterized protein conserved in bacteri
      0.032   13.8   0.2       0.14   11.8   0.2    2.0  2  F-box_5          F-box
       0.15   12.3   0.9        3.7    7.8   0.2    2.7  3  HTH_17           Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   1.3e-19     6e-16       9     123 ..      19     163 ..      13     164 .. 0.84

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 1.3e-19
                      EEEEEEESS......................CSCHHHHHHHHHHCT--EEEEE-HHHHCH-HHHHHHHHHTTEEEEE--SS--EGGGSHHHHHH CS
  Polysacc_deac_1   9 valTfDdgp......................rdntteilpvLkkykvkatffvigglvedypdevremaasGveignHtinhsnlkrlseeevr 80 
                      + lT D +                       + + ++il++L+ky+++at f  +++v+ yp+ +re++++G+e++ H ++h+ + +l e+e++
       KKY21604.1  19 ICLTLDNMGeaadlnrnlwpsdqpigshysvTAVLPQILSLLDKYQIPATYFTETWNVDIYPSTLRELVRRGHEVAWHAFQHEAWAKLGEKEEE 112
                      56666666666666677777777777777778999*********************************************************** PP

                      HHHHHHHHHHHHH..HS-.---E.....EE-GGGEE-H.HHHHHHHHTT.EE CS
  Polysacc_deac_1  81 reierakdalrka..lgr.eprl.....fryPygsasa.tvlevarelgfay 123
                        +er+ + + k     + ep++     fr+P+g +++ ++le ++++g++y
       KKY21604.1 113 GNFERSFEGIGKLakG-DeEPQVpkyrgFRPPGGIINQgRTLELCKRYGLRY 163
                      **********998542.23555455577*******7652789*******998 PP

>> DUF2334  Uncharacterized protein conserved in bacteria (DUF2334)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.7e-05      0.12      59     194 ..      81     267 ..      52     284 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.7e-05
     DUF2334  59 evLkylqakGgeialHGYtHqygtvk.sevsgegfeflseseakeriekGieilkklgikpkgFeaPhyaaseetykalkkyfsiiyer...ykeyk.. 151
                 ++L++l ++G+e+a H ++H+   +  +++ ++ fe     e   ++ kG e+ +    k +gF +P   +++  +  l k++ + y +   ++  +  
  KKY21604.1  81 STLRELVRRGHEVAWHAFQHEAWAKLgEKEEEGNFER--SFEGIGKLAKGDEEPQVP--KYRGFRPPGGIINQGRTLELCKRYGLRYLSpaaHDAGYvv 175
                 68*******************9854465555555655..334445555555554433..3456666666666665555555555554332222222233 PP

     DUF2334 152 ...gq.............................kegltyipenlgyvee...dee...............ienaealkvrdglasffyHpyl 194
                    g                                + +y+ +++g +++   +                 i++++a   ++g+ +  +Hp+l
  KKY21604.1 176 vvvGGddddeenqetvaeksttdniivilpfkwsTVDAYYYMTTFGGLRKikhE-PnpsdplpptelkkryIAEIDATIEKGGFLAPLFHPFL 267
                 333004444555566666666666666666666633333333444444444321.12334444444444542444443222666666666666 PP

>> F-box_5  F-box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       0.5   2.3e+03      14      22 ..     265     273 ..     265     276 .. 0.89
   2 ?   11.8   0.2   3.1e-05      0.14       7      22 ..     275     290 ..     271     295 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.5
                 CC---HHHH CS
     F-box_5  14 pyitsprDR 22 
                 p++++++DR
  KKY21604.1 265 PFLSNEKDR 273
                 799*****9 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 3.1e-05
                 GTHHHHHCC---HHHH CS
     F-box_5   7 eVlecVlpyitsprDR 22 
                 eV+e Vl+y++++rDR
  KKY21604.1 275 EVVEEVLKYLSEKRDR 290
                 79************** PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.051   2.3e+02      15      25 ..      80      90 ..      77      93 .. 0.90
   2 ?   -3.4   0.0       2.7   1.2e+04      27      41 ..     236     249 ..     234     250 .. 0.65
   3 ?    7.8   0.2   0.00082       3.7      31      51 .]     287     309 ..     277     309 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.051
      HTH_17 15 rstvyrlirrg 25
                +st+++l+rrg
  KKY21604.1 80 PSTLRELVRRG 90
                69********9 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.7
      HTH_17  27 lpaa..kiGrrwriprs 41 
                 lp++  k+   ++i + 
  KKY21604.1 236 LPPTelKK---RYIAEI 249
                 77874445...888876 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00082
      HTH_17  31 k..iGrrwriprsdleewlekrr 51 
                 k  +G  w+ ++++++ew++++r
  KKY21604.1 287 KrdRGEVWLAKCEEVDEWIRGHR 309
                 335788899**********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2196.08
//
Query:       KKY21605.1  [L=196]
Description: putative histone acetyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-14   53.1   0.0    4.5e-14   52.5   0.0    1.3  1  MOZ_SAS        MOZ/SAS family
  ------ inclusion threshold ------
       0.12   11.4   0.2       0.18   10.8   0.2    1.2  1  YdfA_immunity  SigmaW regulon antibacterial


Domain annotation for each model (and alignments):
>> MOZ_SAS  MOZ/SAS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0     5e-18   4.5e-14      99     175 ..       1     107 [.       1     111 [. 0.93

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 5e-18
     MOZ_SAS  99 iefsYeLskrekk...igtPekPlsdlgllsyrsywkeeilellkek...........................ekkkisieeisektgikeeDiistl 167
                 +++sY+Ls +e++   ig+PekPls +g++sy ++w+e+++++l  +                           +++ ++++ei e+tg+ +eD++ +l
  KKY21605.1   1 MSVSYKLSGWEWEggvIGGPEKPLSAMGKKSYSRFWEERVARYLLGEsrdadgrrildrvsiakrkpkkepnkkKREVLTVREIGERTGMLAEDVVVAL 99 
                 689******99865559**************************998899***********************9888899******************** PP

     MOZ_SAS 168 eelkllky 175
                   + + ++
  KKY21605.1 100 VGMGVCEQ 107
                 99998876 PP

>> YdfA_immunity  SigmaW regulon antibacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2     2e-05      0.18     147     191 ..      79     122 ..      72     132 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2e-05
  YdfA_immunity 147 vtvranierlvGgageetiiarvGegivttiGsaeshkevlenPd 191
                    +tvr +i +  G  +e+ ++a vG g+ + +G  +s k+ le+ +
     KKY21605.1  79 LTVR-EIGERTGMLAEDVVVALVGMGVCEQVGRKSSTKKALETTN 122
                    4666.5666789999**************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1277.24
//
Query:       KKY21606.1  [L=518]
Description: hypothetical protein UCRPC4_g03557 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       892  (0.0497518); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.50
# Mc/sec: 3128.01
//
Query:       KKY21607.1  [L=408]
Description: putative protein kinase domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-25   88.7   0.0      5e-24   85.1   0.0    2.0  1  Pkinase      Protein kinase domain
     0.0014   18.0   0.0      0.017   14.4   0.0    2.3  3  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   0.0   5.6e-28     5e-24       1     264 []      71     406 ..      71     406 .. 0.85

  Alignments for each domain:
  == domain 1  score: 85.1 bits;  conditional E-value: 5.6e-28
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHSCTTB--EEEEEEE....SSEEEEEEE--TTEBHHHHHH... CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke..kkvlrEikilkklkhpnivrlyevfee....kdelylvleyveggeladlle... 90 
                 ++++ klG Gs++++  a++ ++++ +A+K+  +++  +++    + l  +   ++l   n+ +l+++fe      ++++l l++ +   l d+ +   
  KKY21607.1  71 FQTVAKLGYGSSSTIWLARDLQDHQYIALKIYIHNSVHHRELpfYEHLDKVLPSEHLGAGNVRKLLDSFEVvgphGKHITLALQVSQMS-LRDMDTvfm 168
                 57789**************************999999998887877788888889999************9999988888888877744.555555553 PP

                 HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.T..................................TTE...EEE-SGTTSEESSSS CS
     Pkinase  91 rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.e..................................kge...lKitDFGlakeless 151
                 + + ++ee +k+ ++++le++++lH +     D+ p N+L+  +                                    +   l ++DFG ++     
  KKY21607.1 169 KGRGFDEEFVKSAIRELLEAIDFLHTET---PDIHPGNLLLGlNdnslfkklednefsnpvprkmlsdrtiylsrlmkP-KvgpLLLSDFGEVRLGPGP 263
                 7777**********************98...7*********97678888888888888888888888777777766641.2455889999998887776 PP

                 CSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT..SHH...HHHTTS............... CS
     Pkinase 152 skltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg..etkeklpeasei............... 233
                 +     ++   Y+APE l   + s +vD+Ws+G++ + ll gk++f ++k++ +++  ++   +++  lg  ++++  ++ +                 
  KKY21607.1 264 H--AGDIMPIMYRAPEALLWIQWSYPVDIWSVGLTAWDLLEGKTLFTARKEDGSFSDGVHF-SELIAALGppPVELLDRHLERAheywdedgkwgefvp 359
                 5..7778899******************************************999999998.55555566683444444444335558888999***** PP

                 ................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 ................seeakdllkkllkkdpkkRltaeellqhpyl 264
                                 +  +++++++ l++dp+kR+ta+ellq+p+l
  KKY21607.1 360 ipkgktlevgetklknNTRFLQFIRRALHWDPSKRPTAKELLQDPWL 406
                 **********************************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.58   5.2e+03       6      40 ..      76     106 ..      72     119 .. 0.62
   2 !   14.4   0.0   1.9e-06     0.017     164     204 ..     266     305 ..     248     318 .. 0.87
   3 ?    0.6   0.0     0.031   2.8e+02     232     257 ..     377     402 ..     364     403 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.58
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTS CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtlkeea 40 
                  klG G+ ++++ ++      ++++ +a+K+  +++
   KKY21607.1  76 KLGYGSSSTIWLARDL----QDHQYIALKIYIHNS 106
                  6777777777777666....556666666664444 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.9e-06
                  SSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSG CS
  Pkinase_Tyr 164 eaklpvkWmapEslkekkftsksDvWsfGvllwEiftlges 204
                  +  +p+ + apE+l   + +   D+Ws G + w +++ g++
   KKY21607.1 266 GDIMPIMYRAPEALLWIQWSYPVDIWSVGLTAWDLLE-GKT 305
                  6779******************************998.665 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.031
                  HHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 232 eelyelmkkcweedpeeRptfselve 257
                  +++ +++++ ++ dp++Rpt +el++
   KKY21607.1 377 TRFLQFIRRALHWDPSKRPTAKELLQ 402
                  567789999************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2614.34
//
Query:       KKY21608.1  [L=237]
Description: putative prefoldin subunit 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-25   88.6   2.3    3.5e-23   81.8   2.3    2.2  1  Prefoldin    Prefoldin subunit
    8.6e-05   22.4   2.8    0.00033   20.6   0.1    2.3  2  Prefoldin_2  Prefoldin subunit
    0.00069   19.3   2.7      0.024   14.2   0.3    2.1  2  Filament     Intermediate filament protein
  ------ inclusion threshold ------
      0.012   15.1   1.4       0.44    9.9   0.2    2.1  2  DUF2353      Uncharacterized coiled-coil protein (DUF2353)
      0.012   15.6   1.9      0.015   15.3   1.1    1.5  1  YscO         Type III secretion protein YscO
      0.032   14.5   4.3       0.15   12.4   0.2    2.5  2  Rx_N         Rx N-terminal domain
       0.14   12.3   1.9        7.3    6.8   0.3    2.2  2  HTH_Tnp_1_2  Helix-turn-helix of insertion element transposas
       0.26   11.3   1.3        3.2    7.8   0.1    2.2  2  DUF1664      Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   2.3   1.6e-26   3.5e-23       1     120 []      65     212 ..      65     212 .. 0.93

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 1.6e-26
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT...........................-TT-EEEEEEETTEEEEEE--STT..EEEEEEETTEEE CS
   Prefoldin   1 lkeeleslqaelaqlkeaieelektletlktlkk..........................edegkevlvplgaglyvkaevkdtd..kvlvdlGagyyv 71 
                 +++++ +++++ + lk++i+e + tlet++ l k                          ++ g+ +++ l+++ly+ a+v+ t+  +v+++lGa+++v
  KKY21608.1  65 YQFMELNINKRAEGLKDKIPEMKGTLETVRFLLKkaqsvssqneveadnvldddlestnkAKGGIRTTFSLNDTLYAHAKVDTTNlkEVYLWLGANVMV 163
                 7888889999999999999999999999999988899999999999999999999999999********************6665227*********** PP

                 EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  72 eksleeAiellkkkleelekqlekleeeleklkdqittleanlaqlyqk 120
                  ++leeA+  l  +le ++k l+++ee+ e+l++qitt+e++ a++y++
  KKY21608.1 164 AYPLEEAENMLASRLEAAQKKLKECEEDGEFLREQITTMEVATARVYNW 212
                 ***********************************************98 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.3       0.1   2.3e+02      68     102 ..      52      86 ..      46     109 .. 0.59
   2 !   20.6   0.1   1.5e-07   0.00033      46      96 ..     152     203 ..     132     209 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.1
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
  Prefoldin_2  68 eerketlekeiktlekqleklekeleelkeelqkk 102
                  e+++ + ++ i++++  + +++k+ e lk+++ ++
   KKY21608.1  52 EATLRSFQEMISKYQFMELNINKRAEGLKDKIPEM 86 
                  55555555555555555555555555555555444 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.5e-07
                  -EEEEET.TEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  46 kvyklvG.dvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelk 96 
                  +vy   G +v+v  ++ee++++L  r+e ++k++k++e+  e l+++++ ++
   KKY21608.1 152 EVYLWLGaNVMVAYPLEEAENMLASRLEAAQKKLKECEEDGEFLREQITTME 203
                  5666666479*************************************99887 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.3   1.1e-05     0.024      95     169 ..      45     121 ..      33     127 .. 0.88
   2 !    5.4   0.1    0.0052        12     245     279 ..     166     200 ..     144     206 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXX CS
    Filament  95 lnkreevEaelkalrkdldeatlarvdLekkvesLkeelaflkkvheeEvkelqkqvs...eqvlvevdaarkldLte 169
                 ++ r +vEa+l++++  + + + + ++++k+ e Lk+ +  +k   e+ v+ l k+++   +q  ve d++   dL++
  KKY21608.1  45 VHTRADVEATLRSFQEMISKYQFMELNINKRAEGLKDKIPEMKGTLET-VRFLLKKAQsvsSQNEVEADNVLDDDLES 121
                 67899***************************************9986.666666665577999*******9999986 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0052
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 245 qlaeleerleaeleklqeklseleeelaeireema 279
                  l+e+e++l++ le +q+kl+e ee+ + +re++ 
  KKY21608.1 166 PLEEAENMLASRLEAAQKKLKECEEDGEFLREQIT 200
                 68999999999999999999999999998888865 PP

>> DUF2353  Uncharacterized coiled-coil protein (DUF2353)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1    0.0082        18      64     118 ..      56     115 ..      35     136 .. 0.72
   2 ?    9.9   0.2    0.0002      0.44      75     113 ..     169     207 ..     160     227 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0082
     DUF2353  64 kklsqlleesreenkalkleveeLrqklkeaqgDiklLR.....eqlarqrlglkdedll 118
                 ++ ++++++++  + ++++ +e L++k+ e++g  +++R     +q  +++ +++ +++l
  KKY21608.1  56 RSFQEMISKYQFMELNINKRAEGLKDKIPEMKGTLETVRfllkkAQSVSSQNEVEADNVL 115
                 5667788888888888999999*****************765443333333333334433 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0002
     DUF2353  75 eenkalkleveeLrqklkeaqgDiklLReqlarqrlglk 113
                 e +++l   +e+ ++klke ++D + LReq+++ +++++
  KKY21608.1 169 EAENMLASRLEAAQKKLKECEEDGEFLREQITTMEVATA 207
                 567899999*******************99988766643 PP

>> YscO  Type III secretion protein YscO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   1.1   6.6e-06     0.015      52     119 ..     137     208 ..     130     231 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.6e-06
                 HHHHHHHHTTT--HHHHHHHH...HHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO  52 arlyaeiigklvllkelekvk...qqval.LrekeaelekqveeakqqleaerealrqarkelqearraveK 119
                 + lya ++  + +lke+  +      va+ L+e+e+ l++++e a+++l++++e  + +r++++  + a+++
  KKY21608.1 137 DTLYAHAKVDTTNLKEVYLWLganVMVAYpLEEAENMLASRLEAAQKKLKECEEDGEFLREQITTMEVATAR 208
                 6688888888888888888887655555569*******************************9988777766 PP

>> Rx_N  Rx N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   6.5e-05      0.15      17      52 ..      70     108 ..      51     119 .. 0.77
   2 ?    3.3   0.4     0.043        96       7      39 ..     172     204 ..     166     222 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.5e-05
        Rx_N  17 a...kllkgvkeeleklkdeLesiqavLedaeerqikde 52 
                     k+ +g+k+++ ++k +Le+++ +L++a     ++e
  KKY21608.1  70 LninKRAEGLKDKIPEMKGTLETVRFLLKKAQSVSSQNE 108
                 2557999************************99777664 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.043
        Rx_N   7 qkLadllaeeakllkgvkeeleklkdeLesiqa 39 
                 ++La+ l+   k+lk+ +e+ e+l+++  +++ 
  KKY21608.1 172 NMLASRLEAAQKKLKECEEDGEFLREQITTMEV 204
                 67899999999*************999998875 PP

>> HTH_Tnp_1_2  Helix-turn-helix of insertion element transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.3    0.0032       7.3      62     109 ..      66     113 ..      50     126 .. 0.85
   2 ?    5.0   0.1     0.011        26      42      78 ..     152     188 ..     136     215 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0032
                  HHHHTTHHHHHHHHHHHHHSSS--HHHHHHHHHHTT--EEEEEEEEE- CS
  HTH_Tnp_1_2  62 efleeeraevykaLlrkilkgrssvkAieLylkrrgeltdkkkveakl 109
                  +f+e + ++  + L+ ki + +  ++ ++  lk+ + ++++++vea+ 
   KKY21608.1  66 QFMELNINKRAEGLKDKIPEMKGTLETVRFLLKKAQSVSSQNEVEADN 113
                  79999999999**********************************984 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.011
                  HHHHHHH-HHHHHHHHHHHHHHHHTTHHHHHHHHHHH CS
  HTH_Tnp_1_2  42 TlykWkkkkeFieyvnelaeefleeeraevykaLlrk 78 
                    y W+  +  ++y  e ae++l++ ++ + k+L++ 
   KKY21608.1 152 EVYLWLGANVMVAYPLEEAENMLASRLEAAQKKLKEC 188
                  5699999999999*999********999999999875 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.061   1.4e+02      75      98 ..      69      92 ..      38     125 .. 0.50
   2 ?    7.8   0.1    0.0014       3.2      56      98 ..     166     208 ..     131     215 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.061
     DUF1664 75 ldeqkeiskeikeevtevredlse 98
                  + ++ ++ +k+++ e+++ l++
  KKY21608.1 69 ELNINKRAEGLKDKIPEMKGTLET 92
                222222222333333333333333 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0014
     DUF1664  56 slaatkrhLssridrvdkkldeqkeiskeikeevtevredlse 98 
                  l+++ + L+sr++  +kkl+e++e  + ++e++t+++  +++
  KKY21608.1 166 PLEEAENMLASRLEAAQKKLKECEEDGEFLREQITTMEVATAR 208
                 67889999**************************999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1005  (0.0560544); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 1448.87
//
Query:       KKY21609.1  [L=561]
Description: putative amino acid permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-39  134.0  51.4    8.8e-39  133.5  51.4    1.2  1  AA_permease_2  Amino acid permease
    1.1e-15   57.2  46.1    2.2e-15   56.2  30.2    2.0  2  AA_permease    Amino acid permease
  ------ inclusion threshold ------
        1.2    9.0   5.0        7.8    6.4   0.1    3.5  3  DUF2976        Protein of unknown function (DUF2976)


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.5  51.4   1.5e-42   8.8e-39       3     424 ..      61     531 ..      59     532 .. 0.81

  Alignments for each domain:
  == domain 1  score: 133.5 bits;  conditional E-value: 1.5e-42
  AA_permease_2   3 llsafalvigsvigsgifvkn...laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaa....fgkkvaflsawfnwfayvpv 91 
                    ++s++++++ ++    i+ ++   ++++gg + +++ +  + +g   v++ +aE++s+ p+ gG+y++++++    +++++ ++s+wf+++++   
     KKY21609.1  61 FISTLGFTCCVMGTWEIMLTTctaGLTAGGLSGLFYSMCWCYLGQAFVVFSLAEMASMAPTAGGQYHWVSEFaprkYQRFLSYCSGWFSAISWQSI 156
                    67777777777766667666555557778889999999999999999*************************4444489999*******9999888 PP

  AA_permease_2  92 las..ilsv.aasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffp 184
                    +a+  +++  +++ ++ + ++++++++w++ l+++a +il  l+n+++ k++  +  i + ++ l + ++ i++ ++t+ ++++   ++   +f+ 
     KKY21609.1 157 IAIdsYIVGvIIQGIVVVNDESYVPTRWQATLLIWASIILMSLFNAFAAKHLPLAEGIFVACHCL-L-FFPIVITVFTLAPKQSA--HDVFASFTD 248
                    777444433378888888899*******************************************5.4.45555555555555554..223333444 PP

  AA_permease_2 185 n..gwpgv....llgllivlwsfdGfesaanvseevkk.k.dvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsva.alffeavggkv 271
                    n  gw+ +    l g   +++ + G +s+a++seev+     vpka+++++l+ + +++ + + + ++++  + a +s +g ++  +f +a+++  
     KKY21609.1 249 NgaGWSNMglttLIGQVSAIFIVLGSDSVAHMSEEVEDaGiIVPKAMIWSFLLNIPFTFIILLMICFCIGNITDALSSVTGFPFiYIFQNATQSAS 344
                    4447775432224444559****************9996447*******************9999999999665555555556615555555566* PP

  AA_permease_2 272 vaiivvilialsllgaintavigssrvlealardgvlP..rffakv..........................n.kfgspiraiiltaivslillll 338
                    +++++ +l+ + ++ + ++a++++sr+ +a+ardg+lP   +   v                          +   ++pi++ii+t+ ++l+++ l
     KKY21609.1 345 GTTALTVLVLILIIMITISALASTSRQTFAFARDGGLPfpQWVGAVsspillsprskknplnltnfpfssqvHpTMHIPINSIIVTCGFTLLIS-L 439
                    ***************************************988888899999999999999999977777777656778************6665.6 PP

  AA_permease_2 339 fllassaaynfllsvsslgliisyllliigalilrkkrphlkr.......pgkilvaiigalfllfllvalffppkgpatqssliytiiltva 424
                    + ++s+ a+n+lls+ss +l+  y+  + ++ + r   + l+        +g  +++i ++ ++++ ++++f+p+    t + ++++++l+v 
     KKY21609.1 440 INIGSYVAFNALLSLSSTALMATYTTSVGCMTWRRLAGEPLPPsrfslgrWG-LPINICACAYSIWSFFWAFWPTYADITAQDFNWSVVLFVS 531
                    66778**********************9999998988777755445533243.69*******************9988899******999885 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2  30.2   3.8e-19   2.2e-15      16     329 ..      79     388 ..      68     393 .. 0.77
   2 !    7.0   8.0   0.00032       1.9     325     451 ..     411     531 ..     408     547 .. 0.74

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 3.8e-19
  AA_permease  16 fvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrf....lgpelGfviGlnylfswitvlaleltaasiliqfwelvtd 109
                  ++     l ++G+ g++ ++  +++  ++v+ sl+e+a++ p +gg y+++s+f      + l++  G+   +sw   +a++  +++ +iq +  v d
   KKY21609.1  79 LTTCTAGLTAGGLSGLFYSMCWCYLGQAFVVFSLAEMASMAPTAGGQYHWVSEFaprkYQRFLSYCSGWFSAISWQSIIAIDSYIVGVIIQGIVVVND 176
                  4555667889999999*********************************98876222257789*******9999999999999999999998844444 PP

  AA_permease 110 lpkawvt.........gavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeegaf 198
                   +   ++         +   +++++++n +++k    ae i+  +  + +   +i ++++la ++ +++  f++++dng+    +   g         
   KKY21609.1 177 ES---YVptrwqatllIWASIILMSLFNAFAAKHLPLAEGIFVACHCLLFFPIVI-TVFTLAPKQSAHD-VFASFTDNGA---GWSNMG--------- 257
                  22...22245566655555566777777778888888888887777665554333.3445666666666.9*********...233333......... PP

  AA_permease 199 knfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplinavi 296
                  +  +++ v ++f   G  +va +++Ev+d    +Pka++  +++ + f ++++ll++  +  n ++ l+ s+++ + + if++ + ++   + +++++
   KKY21609.1 258 LTTLIGQVSAIFIVLGSDSVAHMSEEVEDAGIIVPKAMIWSFLLNIPF-TFIILLMICFCIGNITDALS-SVTGFPFIYIFQNATQSASGTTALTVLV 353
                  5589999********************************998876554.44444444555567777777.46666788888888889999999***** PP

  AA_permease 297 ltaalssansslysasRvlyslakdglaP..kvlk 329
                  l+ ++++ +s+l+s+sR+ +++a+dg +P   +++
   KKY21609.1 354 LILIIMITISALASTSRQTFAFARDGGLPfpQWVG 388
                  *****************************775544 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00032
  AA_permease 325 PkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfRkalkyqgrsieelgfkaallplgvilvlaal 422
                  P+  +++   + P+++i++++ + ll+ l++  +    ++fn ll++s  + +++++ +  + + +R+    +    ++++   ++lp   + +  ++
   KKY21609.1 411 PFSSQVHPTMHIPINSIIVTCGFTLLISLINIGSY---VAFNALLSLSSTALMATYTTSVGCMT-WRRL-AGEPLPPSRFSLGRWGLPINICACAYSI 503
                  666667777899***********999987654433...69******************999999.6654.3666667788888888888888887777 PP

  AA_permease 423 iiillilalyayltvkkgpkdwgaasfaa 451
                  ++++  +++  y+ + +++ +w+++ f++
   KKY21609.1 504 WSFFW-AFWPTYADITAQDFNWSVVLFVS 531
                  77664.45555566666776777666665 PP

>> DUF2976  Protein of unknown function (DUF2976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0013       7.8      45      79 ..     237     271 ..     215     273 .. 0.82
   2 ?   -1.4   0.1      0.34     2e+03      60      75 ..     345     360 ..     330     371 .. 0.52
   3 ?    2.3   0.3     0.024   1.4e+02      34      73 ..     497     536 ..     492     544 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0013
     DUF2976  45 kaalkkfneisegkaewgkfgltlvvGvvllvvvi 79 
                 ++a  +f+   ++ a w+++glt ++G v  ++++
  KKY21609.1 237 QSAHDVFASFTDNGAGWSNMGLTTLIGQVSAIFIV 271
                 66788999999****************98766654 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.34
     DUF2976  60 ewgkfgltlvvGvvll 75 
                   + + +++++ ++++
  KKY21609.1 345 GTTALTVLVLILIIMI 360
                 4444443333333333 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.024
     DUF2976  34 vlaavaflaVakaalkkfneisegkaewgkfgltlvvGvv 73 
                 + +a ++    +a   ++++i  ++ +w+ +  + ++G  
  KKY21609.1 497 CACAYSIWSFFWAFWPTYADITAQDFNWSVVLFVSIMGLA 536
                 5677888888999999**************9999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.53
# Mc/sec: 3158.51
//
Query:       KKY21610.1  [L=1899]
Description: putative nuclear envelope pore membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-24   85.5   0.0    7.7e-24   84.1   0.0    1.9  1  YccV-like        Hemimethylated DNA-binding protein YccV like
    2.6e-10   40.1   0.0    4.5e-10   39.3   0.0    1.4  1  Transglut_core2  Transglutaminase-like superfamily
    1.4e-08   34.5   0.1    3.6e-08   33.2   0.1    1.7  1  F-box-like       F-box-like
    2.8e-06   27.0   0.1    8.5e-06   25.5   0.0    2.0  2  F-box            F-box domain
     0.0094   16.5   0.0        2.2    9.0   0.0    4.0  4  Ig_3             Immunoglobulin domain
  ------ inclusion threshold ------
       0.11   12.6   0.1         17    5.6   0.0    4.0  4  I-set            Immunoglobulin I-set domain
       0.13   12.1   0.0       0.28   11.1   0.0    1.5  1  F-box_4          F-box


Domain annotation for each model (and alignments):
>> YccV-like  Hemimethylated DNA-binding protein YccV like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.0     3e-27   7.7e-24       2      81 ..    1754    1829 ..    1753    1884 .. 0.91

  Alignments for each domain:
  == domain 1  score: 84.1 bits;  conditional E-value: 3e-27
   YccV-like    2 kyrvGqvvrhkrygyrGVivgwdeecaaseewiekigveelsegrnqpfYhvlvdtedsekvsvrYvaeenlelikssep 81  
                  ky+vGqv+ h+rygyrGVi+gwd++c+a eewie +gv++l +grnqpfY vlv ++ +    +rYva e++++ +++e 
  KKY21610.1 1754 KYKVGQVFEHNRYGYRGVITGWDAKCEAREEWIEGMGVDRLADGRNQPFYIVLVINDLT----IRYVASESIKILQPPET 1829
                  9****************************************************877777....78*********999875 PP

>> Transglut_core2  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   1.8e-13   4.5e-10       3     154 ..    1457    1626 ..    1455    1627 .. 0.77

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 1.8e-13
  Transglut_core2    3 vlaeLdalaaevrae......lsseraaaekleaLnellyeelgFagned..dyydprnslldqVLerrr..GiPislsvvylevArrlglp 84  
                       v ++Ld++a+ +rae      l    +++++  a++++l  ++ + g +   +y+ ++n +l   L + +   +P++  +++++++ r++l+
       KKY21610.1 1457 VTNRLDQIAETLRAEkpgildL----TERQRSIAIADFLR-RHTLVGMRPgqEYHALQNNFLGMALASDDhnALPLISVAIFCSLCTRFDLK 1543
                       7789***********7765322....23344457777764.555555442239*************875555******************** PP

  Transglut_core2   85 legvgfPghflvrvgespege.............vliDPfnaGrllskedleellraa.lgaeaeltreflapasnrdvltRll 154 
                       ++ ++fP h+   v   ++g+             +++DP+ +++ ++++ l+e+++   + ++++  ++fl pas  ++  R+ 
       KKY21610.1 1544 AKLCNFPFHVYAMVY-PKDGYdldgnmtshtiepMFLDPWRSSEEVTVSSLREYISMLpNIDRVRSVDDFLIPASIPEISLRCA 1626
                       *************99.334444666666667778*****************998865413337889999999999999988875 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1   1.4e-11   3.6e-08       2      48 .]    1270    1315 ..    1269    1315 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.4e-11
  F-box-like    2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlvlr 48  
                  ++LP+E+L  I+++ +p++ ++l +V rr+r ++   plLW++ +l+
  KKY21610.1 1270 ADLPEEVLQNILRHADPQTAIALGQVARRFRHATEE-PLLWKTYCLS 1315
                  79*******************************965.5*******85 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   3.3e-09   8.5e-06       3      47 ..    1269    1313 ..    1267    1314 .. 0.95
   2 ?   -3.0   0.3         3   7.6e+03      18      33 ..    1525    1540 ..    1525    1540 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 3.3e-09
                  HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH CS
       F-box    3 lsrLPsevlrhILerLplsdllalrrVSkgwrilidsdrlwcksi 47  
                  l +LP+evl +IL++ ++ + +al +V +++r ++ ++ lw++++
  KKY21610.1 1269 LADLPEEVLQNILRHADPQTAIALGQVARRFRHATEEPLLWKTYC 1313
                  789***************************************998 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3
                  S-HHHHHHHCTT-HHH CS
       F-box   18 LplsdllalrrVSkgw 33  
                  Lpl+++  + + ++++
  KKY21610.1 1525 LPLISVAIFCSLCTRF 1540
                  8999*********987 PP

>> Ig_3  Immunoglobulin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.84   2.2e+03       2      44 ..     559     605 ..     558     628 .. 0.69
   2 ?    1.4   0.0       0.2   5.1e+02      13      68 ..     772     820 ..     768     830 .. 0.62
   3 ?   -2.3   0.0       2.7     7e+03      27      71 ..    1095    1143 ..    1072    1148 .. 0.57
   4 !    9.0   0.0   0.00084       2.2       4      77 ..    1161    1242 ..    1159    1243 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.84
                 EEEECCCSCEE.EETTS-EEEEEEE..EEES--..EEEEEETTS...T CS
        Ig_3   2 PvItvppsstv.vtegesvtLtCea..egnppp..titWykngeklss 44 
                 P + + ++++  v  g++v L+     +g+pp   ++t +++g+  ++
  KKY21610.1 559 PNVALASEDVAdVCAGNPVGLSVDLdlTGTPPFqvRYTILHDGQL-QP 605
                 556656666667899999999999987788877788899999994.33 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.2
                 EETTS-EEEEEEEEEES--EEEEEETTS....TTCSEEESSEECCCTEEEESS--GG CS
        Ig_3  13 vtegesvtLtCeaegnppptitWykngek.lssnstsssissegssssLtisnvtks 68 
                 + eg+s++L  + +g +p t+t  +++e  ++s++t    + ++ +s +t+     +
  KKY21610.1 772 ALEGKSISLPIRLQGIQPWTVTLIHSKEGgQNSETT---HRLKDRNSVVTV-----R 820
                 689**********99998899888888732222111...123344444433.....3 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.7
                  EES--EEEEEETTS.......TTCSEEE.SSEECCCTEEEESS--GGG-E CS
        Ig_3   27 gnppptitWykngek....lssnstsss.issegssssLtisnvtksdsG 71  
                  g pp +i ++++g++    + s+s+ ++ ++ +++ +++ti+ ++ + sG
  KKY21610.1 1095 GLPPFEIFYRFQGHNrkavV-SSSHNPTfRRIAEQPGEFTITALSDNASG 1143
                  45555777777777655532.22233335777788888999886555555 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.00084
                  EECCCSCEE...EETTS-EEEEEEEEEES--EEEEEETTS...TTCSEEE........SSEECCCTEEEESS.........--GGG-EEEEEEE CS
        Ig_3    4 Itvppsstv...vtegesvtLtCeaegnppptitWykngeklssnstsss........issegssssLtisn.........vtksdsGtYtCvA 77  
                  ++ ++  t+   ++eg +++L  e +g+pp ++t++++++++ s   +                    + ++         +++sd+G+Y+ +A
  KKY21610.1 1161 VKMSKGRTSivdIHEGGEAELLFEFTGSPPFEFTYTRSENPSPS---KGGkkggkpvvL---------ETRSeksweyekrIRASDAGVYEVTA 1242
                  55555555556799***********999999********96222...211233444432.........3333444444556999******9988 PP

>> I-set  Immunoglobulin I-set domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.18   4.5e+02      14      49 ..     324     359 ..     311     373 .. 0.79
   2 ?   -3.2   0.1       3.6   9.3e+03      29      38 ..     383     393 ..     379     418 .. 0.76
   3 ?   -0.9   0.0      0.68   1.7e+03       9      37 ..     769     797 ..     765     827 .. 0.72
   4 ?    5.6   0.0    0.0065        17      10      75 ..    1171    1242 ..    1163    1246 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.18
                 TTS-EEEEEEEECSSS-EEEEEETTCB-STSSSEEE CS
       I-set  14 eGesvelectveGepepsvsWakdgselkssqrvkv 49 
                  G+  +l  +v+G p+ +v+  k  ++ +ss++++ 
  KKY21610.1 324 AGDVSDLLLKVSGLPPFKVKYSKAINNHESSSHFQT 359
                 6899999****************9666666777764 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.6
                 S-EEEEEET.T CS
       I-set  29 epsvsWakd.g 38 
                 +p+v Wak  +
  KKY21610.1 383 NPQVDWAKPvE 393
                 799***99753 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.68
                 EEEEETTS-EEEEEEEECSSS-EEEEEET CS
       I-set   9 dvevseGesvelectveGepepsvsWakd 37 
                 ++++ eG+s++l ++ +G ++ +v+  + 
  KKY21610.1 769 SIVALEGKSISLPIRLQGIQPWTVTLIHS 797
                 68999*************99999986655 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.0065
                  EEEETTS-EEEEEEEECSSS-EEEEEETTCB-ST......SSSEEEEEETTEEEEEESSB-GGGGEEEEEEE CS
       I-set   10 vevseGesvelectveGepepsvsWakdgselks......sqrvkvtveeaeytLtIsnvevsDeGkYtcka 75  
                  v ++eG ++el  + +G+p+ +++ ++ +++  s       + v ++ +++++    +++++sD+G Y+++a
  KKY21610.1 1171 VDIHEGGEAELLFEFTGSPPFEFTYTRSENPSPSkggkkgGKPVVLETRSEKSWEYEKRIRASDAGVYEVTA 1242
                  7899************************9999888998854444444444444444578999******9998 PP

>> F-box_4  F-box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00011      0.28       3      44 ..    1267    1308 ..    1265    1339 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
     F-box_4    3 dsLssLPlevlqhiaslLDsfsLsqLslvskllrevcssllq 44  
                  ++L +LP evlq+i++  D  + + L +v++++r+ +++ l 
  KKY21610.1 1267 SRLADLPEEVLQNILRHADPQTAIALGQVARRFRHATEEPLL 1308
                  5899******************************98877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1899 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.02u 0.36s 00:00:01.38 Elapsed: 00:00:00.54
# Mc/sec: 10504.10
//
Query:       KKY21611.1  [L=445]
Description: hypothetical protein UCRPC4_g03562 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 2752.21
//
Query:       KKY21612.1  [L=366]
Description: putative voltage-gated k channel beta [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-66  224.8   0.0    1.8e-66  224.3   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.3   0.0     1e-70   1.8e-66      17     292 ..      57     354 ..      53     355 .. 0.93

  Alignments for each domain:
  == domain 1  score: 224.3 bits;  conditional E-value: 1e-70
                   HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE.....--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE- CS
  Aldo_ket_red  17 keealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv.....dlrdaeiksglskeniresleeslkrLgtdyvDllllH 108
                   ++ a++ +++a++aGinffD+Ae+Y  g+se+++Gea+kk ++kr +++i+tK+     ++  + ++ gls+++++e   + l rL++dyvDll++H
    KKY21612.1  57 DQIAFDCMKAAYDAGINFFDCAEAYAGGKSEIVMGEAIKKFGWKRNDIVISTKIywgsaYGEREVNNKGLSRKHLIEGTYAALDRLQLDYVDLLYCH 153
                   5668999***************************************************99999********************************** PP

                   S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT.-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTT CS
  Aldo_ket_red 109 rpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynll.releeegllelckkkgvpliaysplggGlltgk 200
                   rpd+++p iee+++a+++l+  Gk+ ++G+S+++ e +  a     + + + + + q +ynll r+  e   l+l++++g++l  +spl++G+ltgk
    KKY21612.1 154 RPDRETP-IEETVRAMNYLINTGKAFYWGTSEWNTEEIAIAhqvaDRLGLIGPLMEQPQYNLLvRQKVEGDFLSLYRQYGLGLTIFSPLKMGILTGK 249
                   *******.****************************99999999999999*************98999999************************** PP

                   TSS---SSSCCC-------..............TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG-..-- CS
  Aldo_ket_red 201 yqseedkedkeprkdlkrd..............ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalel..kl 281
                   y+++ + ++     +   d              e ++k+ ++++ l+ +ak+ + ++a+lal++++s+p+v+++i gas++eq+  +++al+l  kl
    KKY21612.1 250 YNDSIPSDSRMGTAQ---DafsknrakqisekdEAWVKEVEQVKSLDPVAKKLDTNMATLALAWVISNPNVSSAITGASKVEQISSSVKALDLvpKL 343
                   *98776554332222...12346788*****************************************************************777899 PP

                   -HHHHHHHHHH CS
  Aldo_ket_red 282 seeevaeldel 292
                   ++e   e+d++
    KKY21612.1 344 TPEIKGEIDKI 354
                   99998899887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2412.90
//
Query:       KKY21613.1  [L=316]
Description: putative g-protein comlpex beta subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-43  145.6  25.8    6.9e-09   36.2   0.2    7.1  7  WD40          WD domain, G-beta repeat
    3.3e-09   36.9   0.5      0.079   13.3   0.0    4.5  5  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    0.00014   20.7   5.3       0.12   11.0   0.2    4.5  5  Nup160        Nucleoporin Nup120/160
     0.0024   16.9   0.0        9.8    5.0   0.0    4.2  5  Ge1_WD40      WD40 region of Ge1, enhancer of mRNA-decapping 
     0.0042   17.0   0.3         20    5.3   0.0    4.6  6  PD40          WD40-like Beta Propeller Repeat
     0.0056   15.3   0.0       0.69    8.4   0.0    2.2  2  Cytochrom_D1  Cytochrome D1 heme domain
  ------ inclusion threshold ------
      0.039   13.3   0.0          1    8.6   0.0    2.2  2  WD40_like     WD40-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.2e-07    0.0003       5      38 .]       9      44 ..       4      44 .. 0.83
   2 !   29.1   0.9   4.8e-10   1.2e-06       3      37 ..      55      90 ..      53      91 .. 0.91
   3 !   36.2   0.2   2.7e-12   6.9e-09       1      38 []      95     133 ..      95     133 .. 0.95
   4 !   25.3   0.5   7.3e-09   1.9e-05       2      37 ..     137     177 ..     136     178 .. 0.84
   5 !   27.6   0.7   1.4e-09   3.6e-06       7      38 .]     188     220 ..     182     220 .. 0.87
   6 !    6.8   0.0    0.0054        14      11      29 ..     234     252 ..     224     260 .. 0.69
   7 !   13.0   0.0   5.9e-05      0.15      13      37 ..     287     310 ..     276     310 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.2e-07
                EEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40  5 rtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38
                +tl+GH ++vtsla    + ++l+s+s+D+++ iW+
  KKY21613.1  9 GTLEGHsGWVTSLAtSLENPNMLLSASRDKSLIIWN 44
                6899**666*****6555556688***********8 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 4.8e-10
                EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  3 clrtltGHss.vtslafspdgawlasGsdDgtvriW 37
                + r+l GHs+ v+++  s+dga+ +s+s+D+t+r+W
  KKY21613.1 55 PKRSLHGHSHiVSDCVISSDGAYALSSSWDKTLRLW 90
                6799****88679999*******99*********** PP

  == domain 3  score: 36.2 bits;  conditional E-value: 2.7e-12
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g+++rt+ GH ++v s++fs d++ ++sGs+D+++++W+
  KKY21613.1  95 GNTTRTFVGHtGDVMSVSFSADNRQIVSGSRDRSIKLWN 133
                 5789******888*************************8 PP

  == domain 4  score: 25.3 bits;  conditional E-value: 7.3e-09
                 EEEEEEE..SS.SSEEEEEEETTSSE..EEEEETTSEEEEE CS
        WD40   2 qclrtlt..GH.ssvtslafspdgaw..lasGsdDgtvriW 37 
                 +c +t+t  GH ++v++++fsp+ +   ++s+++D+ v++W
  KKY21613.1 137 DCKYTITdkGHtDWVSCVRFSPNPQNpvIVSAGWDKLVKVW 177
                 566666555**777*****999999998899********** PP

  == domain 5  score: 27.6 bits;  conditional E-value: 1.4e-09
                 EESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   7 ltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                   GHs+ ++ +  spdg++ asG++Dgt ++Wd
  KKY21613.1 188 HIGHSGyINTVTISPDGSLCASGGKDGTTMLWD 220
                 349*446*************************9 PP

  == domain 6  score: 6.8 bits;  conditional E-value: 0.0054
                 SSEEEEEEETTSSEEEEEE CS
        WD40  11 ssvtslafspdgawlasGs 29 
                 + +++l fsp+  wl++++
  KKY21613.1 234 DEIHALVFSPNRYWLCAAT 252
                 349***********98664 PP

  == domain 7  score: 13.0 bits;  conditional E-value: 5.9e-05
                 EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriW 37 
                 + sla+s dg+ l++G  D+++r W
  KKY21613.1 287 I-SLAWSADGQTLFAGYTDNKIRAW 310
                 4.899***********88*****98 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.2   5.6e+03      49      72 ..      27      50 ..       4      67 .. 0.62
   2 ?    3.8   0.0     0.028        72      36      68 ..     103     135 ..      82     159 .. 0.70
   3 !   12.6   0.0   4.8e-05      0.12      28      88 ..     175     240 ..     168     244 .. 0.84
   4 !    5.5   0.0     0.008        21      36      79 ..     231     273 ..     225     279 .. 0.85
   5 !   13.3   0.0   3.1e-05     0.079      35      66 ..     280     311 ..     270     315 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.2
  ANAPC4_WD40 49 dgklLavaysdgevrlldaesgkv 72
                 + ++L  a  d ++ + +    ++
   KKY21613.1 27 NPNMLLSASRDKSLIIWNLTRDET 50
                 445666666666666655555554 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.028
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldae 68 
                  ++ + v s++++ d++ ++ +  d +++l +  
   KKY21613.1 103 GHTGDVMSVSFSADNRQIVSGSRDRSIKLWNTL 135
                  5678999********************998865 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 4.8e-05
  ANAPC4_WD40  28 rvwtl.......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  +vw+l       ++ ++++ ++ +  +pdg+l a + +dg+  l d ++ k + sl++++e  +  l 
   KKY21613.1 175 KVWELascriqtDHIGHSGYINTVTISPDGSLCASGGKDGTTMLWDLNESKHLYSLQAGDE--IHALV 240
                  566666666665666788999***********************************99987..76665 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.008
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                  + + e+++L ++p+   L+ a++  ++ ++d e++  v +l+ +
   KKY21613.1 231 QAGDEIHALVFSPNRYWLCAATAS-SITIFDLEKKSKVDELKPE 273
                  57899**************99875.799******9999888765 PP

  == domain 5  score: 13.3 bits;  conditional E-value: 3.1e-05
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlld 66 
                  ++++ e  sLaW+ dg+ L  +y d+++r   
   KKY21613.1 280 KSREPECISLAWSADGQTLFAGYTDNKIRAWG 311
                  455667779*******************9765 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.1    0.0034       8.7     229     251 ..      27      49 ..      10      53 .. 0.79
   2 !   11.0   0.2   4.6e-05      0.12     214     255 ..      58     100 ..      46     111 .. 0.81
   3 ?    2.1   0.1     0.023        59     224     251 ..     112     138 ..     105     145 .. 0.78
   4 ?    0.8   0.0     0.057   1.5e+02     228     285 ..     156     222 ..     148     246 .. 0.62
   5 ?   -0.6   0.0      0.15   3.9e+02     229     247 ..     294     312 ..     282     315 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0034
                 TTTEEEEEETT-EEEEEETTTTE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgk 251
                 + ++l+++srd+ L +Wnl+ + 
  KKY21613.1  27 NPNMLLSASRDKSLIIWNLTRDE 49 
                 789****************8765 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 4.6e-05
                 T-ECEEEEET......TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 214 svalsldvavavvei.gqtylfalsrdgkLrvWnlltgkclat 255
                 s +  ++ ++++v + + +y+++ s d++Lr+W l+tg +++t
  KKY21613.1  58 SLHGHSHIVSDCVISsDGAYALSSSWDKTLRLWELSTGNTTRT 100
                 555556777888865799999999**************99998 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.023
                 .....TTTEEEEEETT-EEEEEETTTTE CS
      Nup160 224 avveigqtylfalsrdgkLrvWnlltgk 251
                 +++  ++  +++ srd+ +++Wn+l ++
  KKY21613.1 112 SFSA-DNRQIVSGSRDRSIKLWNTLGDC 138
                 4444.88889999**********99876 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.057
                 .....TTTEEEEEETT-EEEEEETT.....TTEEEEEEE--.-SSSTTS--SSEESEEESSSSEEEE CS
      Nup160 228 i....gqtylfalsrdgkLrvWnll.....tgkclatidllrdeeaqdessskstldpaesslirvs 285
                      ++ +++++  d+ ++vW l+     t+ +  ++++++ ++++d s ++s +++ ++ l  + 
  KKY21613.1 156 FspnpQNPVIVSAGWDKLVKVWELAscriqTDHIGHSGYINTVTISPDGSLCASGGKDGTTMLWDLN 222
                 4555567777888888888888875222224445555555577777888777777777777666555 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 0.15
                 TTTEEEEEETT-EEEEEET CS
      Nup160 229 gqtylfalsrdgkLrvWnl 247
                 + ++lfa + d+k+r+W +
  KKY21613.1 294 DGQTLFAGYTDNKIRAWGV 312
                 66899************76 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.21   5.4e+02      55      99 ..       5      49 ..       2      55 .. 0.85
   2 ?    2.9   0.0     0.017        44     184     221 ..      59      97 ..      38     120 .. 0.75
   3 ?    1.3   0.0     0.054   1.4e+02     186     215 ..     104     133 ..      93     144 .. 0.84
   4 !    5.0   0.0    0.0038       9.8     186     218 ..     191     223 ..     165     244 .. 0.83
   5 ?    1.6   0.0     0.041   1.1e+02     170     216 ..     268     312 ..     246     315 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.21
    Ge1_WD40 55 teeraLlkglkgevldlafahvsskillavdekgslfvykveeve 99
                + +r  l g +g v+ la +  + ++ll+     sl+++++++ e
  KKY21613.1  5 LIHRGTLEGHSGWVTSLATSLENPNMLLSASRDKSLIIWNLTRDE 49
                557888999999999999999999999999999999999987655 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.017
    Ge1_WD40 184 ieehs.liveaafspdGtalatasedGevkffqvylede 221
                 ++ hs  +++ ++s+dG+    +s d +++++ +   ++
  KKY21613.1  59 LHGHShIVSDCVISSDGAYALSSSWDKTLRLWELSTGNT 97 
                 566775678999*****9999999*******99876555 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.054
    Ge1_WD40 186 ehsliveaafspdGtalatasedGevkffq 215
                 ++  +++ +fs+d   +   s d  +k++ 
  KKY21613.1 104 HTGDVMSVSFSADNRQIVSGSRDRSIKLWN 133
                 445899999999999999999999999986 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.0038
    Ge1_WD40 186 ehsliveaafspdGtalatasedGevkffqvyl 218
                 +   i + ++spdG   a   +dG+  ++ ++ 
  KKY21613.1 191 HSGYINTVTISPDGSLCASGGKDGTTMLWDLNE 223
                 33479999*****************99998764 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.041
    Ge1_WD40 170 gelsveeieegllkieehsliveaafspdGtalatasedGevkffqv 216
                  el++e +e+g    +++++ ++ a+s+dG +l +  +d +++ + v
  KKY21613.1 268 DELKPEYVEKGK--KSREPECISLAWSADGQTLFAGYTDNKIRAWGV 312
                 444444444442..234456777889****************99987 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.9   7.5e+03      23      34 ..      41      55 ..      39      56 .. 0.76
   2 ?    1.2   0.0      0.15   3.8e+02       8      24 ..     105     121 ..     104     121 .. 0.84
   3 ?    3.8   0.0     0.022        56       8      21 ..     192     205 ..     190     206 .. 0.85
   4 ?   -3.1   0.0       3.3   8.5e+03      18      25 ..     212     219 ..     212     219 .. 0.85
   5 ?   -1.6   0.0       1.1   2.9e+03      13      23 ..     238     248 ..     233     249 .. 0.72
   6 !    5.3   0.0    0.0076        20      15      23 ..     290     298 ..     287     299 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.9
                EEEEEECT....TCE CS
        PD40 23 laFsSdRg...sGkp 34
                +++  +R+   +G+p
  KKY21613.1 41 IIWNLTRDetaYGYP 55
                788888887788876 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.15
                 SS.EEEEEE-TTSSEEE CS
        PD40   8 pgnegaPsfSPDGkrla 24 
                 +g+ ++ sfS D + ++
  KKY21613.1 105 TGDVMSVSFSADNRQIV 121
                 6788899*****99986 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.022
                 SS.EEEEEE-TTSS CS
        PD40   8 pgnegaPsfSPDGk 21 
                 +g++   ++SPDG+
  KKY21613.1 192 SGYINTVTISPDGS 205
                 7888899******6 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 3.3
                 TTSSEEEE CS
        PD40  18 PDGkrlaF 25 
                 +DG+++ +
  KKY21613.1 212 KDGTTMLW 219
                 6***9987 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 1.1
                 EEEE-TTSSEE CS
        PD40  13 aPsfSPDGkrl 23 
                 a  fSP+  +l
  KKY21613.1 238 ALVFSPNRYWL 248
                 55789987776 PP

  == domain 6  score: 5.3 bits;  conditional E-value: 0.0076
                 EE-TTSSEE CS
        PD40  15 sfSPDGkrl 23 
                 ++S DG++l
  KKY21613.1 290 AWSADGQTL 298
                 8******98 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.1    0.0038       9.6      37      95 ..      65     124 ..      53     126 .. 0.83
   2 !    8.4   0.0   0.00027      0.69      14      74 ..     213     271 ..     201     303 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0038
                   EEEEEE-TT.SSEEEEEETTSEEEEEESSSSS.EEEEEE-SSEEEEEEE--TTSEEEEEE CS
  Cytochrom_D1  37 lHisrvfasdgRyvyvigRDgkvtliDLwake.ivaevkiGlnarsvavSqddryvivgn 95 
                   +    v +sdg y++  + D ++ l +L + + +   v   ++  sv  S d+r ++ g+
    KKY21613.1  65 IVSDCVISSDGAYALSSSWDKTLRLWELSTGNtTRTFVGHTGDVMSVSFSADNRQIVSGS 124
                   44556889********************999945555788999************99986 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00027
                   GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE CS
  Cytochrom_D1  14 agkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaevk 74 
                   +g   l d ++ ++l  l++g ++H+  vf++ +Ry + ++  + +t++DL +k +v e+k
    KKY21613.1 213 DGTTMLWDLNESKHLYSLQAGDEIHA-LVFSP-NRYWLCAATASSITIFDLEKKSKVDELK 271
                   5666777888899999999999***7.78889.8******************999777754 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.031        78       3      39 ..     108     144 ..      61     181 .. 0.71
   2 ?    8.6   0.0   0.00039         1       4      79 ..     196     270 ..     194     275 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.031
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsive 39 
                 + s+ +s ++  i+ G++d  +++ ++  +++ +i +
  KKY21613.1 108 VMSVSFSADNRQIVSGSRDRSIKLWNTLGDCKYTITD 144
                 5566667777777777777777776666666666654 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00039
   WD40_like   4 YsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilvvtlDGtillslleneeevene 79 
                  ++ is++gsl + Ggkd +  + +l+  +  ++++   d +    +  +   l+++    i+  +le++ +v++ 
  KKY21613.1 196 NTVTISPDGSLCASGGKDGTTMLWDLNESKHLYSLQA-GDEIHALVFSPNRYWLCAATASSITIFDLEKKSKVDEL 270
                 5899*************************99999876.66676666777778899999999988888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 1941.59
//
Query:       KKY21614.1  [L=553]
Description: putative tpr domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00012   22.3   1.2        6.7    7.1   0.0    5.1  5  TPR_12    Tetratricopeptide repeat
     0.0027   17.7   1.7        1.7    8.9   0.2    4.4  4  TPR_2     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.067   12.9   1.1       0.17   11.7   1.1    1.7  1  HET-S     N-terminal small S protein of HET, non-prionic
      0.098   12.7   0.6        1.2    9.2   0.0    2.8  3  ANAPC5    Anaphase-promoting complex subunit 5


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0015       6.7      18      65 ..     114     162 ..     109     164 .. 0.72
   2 ?   -1.2   0.0      0.57   2.6e+03      49      66 ..     181     198 ..     176     202 .. 0.62
   3 ?    0.6   0.0      0.16   7.1e+02       5      30 ..     268     293 ..     264     299 .. 0.81
   4 ?    3.1   0.0     0.025   1.1e+02      35      70 ..     323     355 ..     314     360 .. 0.72
   5 ?    4.4   0.1      0.01        46      56      75 ..     451     470 ..     439     477 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0015
      TPR_12  18 rydeAlellekaleiarrllGpdh.pltattlrnLgrlyralgryeeAl 65 
                 + +eA++ ++ ale+a+++  ++  ++++ + + +++++++ g+  +A+
  KKY21614.1 114 DPEEAFKSFKDALERAQSVGMDTAsDEYLGIIIRMSQMHEKYGEISKAI 162
                 6899999999999999999544433666666666666666666666665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.57
      TPR_12  49 rnLgrlyralgryeeAle 66 
                   Lg++ + +++y++A++
  KKY21614.1 181 AHLGMISSSSEQYQKAES 198
                 456666666667777765 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.16
      TPR_12   5 alnnlaavlrrlgrydeAlellekal 30 
                 +ln+++++l+  +++  A ++++ +l
  KKY21614.1 268 VLNHIGLLLTSIQQHGTAVDIFHNVL 293
                 57778888888888888888888877 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.025
      TPR_12  35 rllGpdhpltattlrnLgrlyralgryeeAlellee 70 
                 ++  +++++++ +  + ++++ a+ ++++Al+++++
  KKY21614.1 323 AV--HNSLGLSLSASGASQVQ-AFRNWQAALNMFRQ 355
                 44..66777777777777776.55588888888887 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.01
      TPR_12  56 ralgryeeAlelleealaia 75 
                 ++lg+y++A  +leea+++a
  KKY21614.1 451 EELGNYKDAKFRLEEATRLA 470
                 37888888888888888876 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.024   1.1e+02      15      30 ..     113     128 ..     111     131 .. 0.88
   2 ?    0.4   0.0      0.21   9.5e+02       5      22 ..     181     198 ..     178     201 .. 0.80
   3 ?   -1.6   0.0      0.88   3.9e+03       4      27 ..     325     349 ..     322     356 .. 0.47
   4 !    8.9   0.2   0.00039       1.7       6      33 ..     445     472 ..     443     473 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.024
       TPR_2  15 gdyeeAleafekAlel 30 
                 +d+eeA + f+ Ale 
  KKY21614.1 113 DDPEEAFKSFKDALER 128
                 689***********96 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.21
       TPR_2   5 ynlGlayyklgdyeeAle 22 
                   lG++   + +y++A+ 
  KKY21614.1 181 AHLGMISSSSEQYQKAES 198
                 568899999999999975 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.88
       TPR_2   4 lynlGlayyklgdy.eeAleafekA 27 
                 ++ lGl++ ++g    +A + +++A
  KKY21614.1 325 HNSLGLSLSASGASqVQAFRNWQAA 349
                 5666666655553333333444444 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.00039
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPn 33 
                 n++   ++lg+y++A+  +e+A +l+ n
  KKY21614.1 445 NRAAFSEELGNYKDAKFRLEEATRLADN 472
                 67777889****************9876 PP

>> HET-S  N-terminal small S protein of HET, non-prionic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.1   3.7e-05      0.17       6      16 ..     331     341 ..     330     342 .. 0.97

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.7e-05
       HET-S   6 SLnASGsSRVH 16 
                 SL+ASG+S+V+
  KKY21614.1 331 SLSASGASQVQ 341
                 9*********9 PP

>> ANAPC5  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.29   1.3e+03      56      73 ..     114     131 ..     108     153 .. 0.84
   2 ?   -1.5   0.1      0.59   2.6e+03      10      35 ..     189     214 ..     179     239 .. 0.67
   3 ?    9.2   0.0   0.00027       1.2      44      72 ..     443     471 ..     407     480 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.29
      ANAPC5  56 hneeAvkaleeairlAre 73 
                 ++eeA k++++a + A+ 
  KKY21614.1 114 DPEEAFKSFKDALERAQS 131
                 689*********999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.59
      ANAPC5  10 rakdYqqaldsLhryFDyvlsqness 35 
                 ++++Yq+a  sL    D ++  +++s
  KKY21614.1 189 SSEQYQKAESSLSSLNDSFILDSDKS 214
                 55667777777766666665555555 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00027
      ANAPC5  44 lLnlaslhadfghneeAvkaleeairlAr 72 
                  +n a ++ ++g++++A  +leea+rlA 
  KKY21614.1 443 TMNRAAFSEELGNYKDAKFRLEEATRLAD 471
                 6899***********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.48
# Mc/sec: 3434.01
//
Query:       KKY21615.1  [L=431]
Description: hypothetical protein UCRPC4_g03566 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-75  251.2   0.0      2e-74  249.8   0.0    1.7  1  SRAP      SOS response associated peptidase (SRAP)


Domain annotation for each model (and alignments):
>> SRAP  SOS response associated peptidase (SRAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.8   0.0   1.1e-78     2e-74      22     219 .]      14     273 ..       2     273 .. 0.86

  Alignments for each domain:
  == domain 1  score: 249.8 bits;  conditional E-value: 1.1e-78
        SRAP  22 eedkelrpsynvaptqkvpvvva.....................................................eeeeeeeeee..........erk 57 
                 eed+ +r++yn+ap+++++v++a                                                     +        +          + +
  KKY21615.1  14 EEDD-VRETYNFAPGYYGLVYRAdvpdygfrnqdaneqqdenadnvndqvdslgssdrstptpkkaskantprtspR--------KqtqddatqdiHFH 103
                 3344.9****************99******99988877777777777777777777777666666666655555441........04445556678*** PP

        SRAP  58 lqamkwGlvPswakdpkklg..lktiNaRsetlae.kplfrsalkkkRcvvpadGFYEW.k..kkgkekqPyfikrkdgkllalAGLydvweeegeeek 150
                 l+am+wGl+P+w+k++ ++g  ++tiN+R+++l e ++++++++++kRc+v+++GFYEW k    gkek+P+f+krkdg+l+++AGL+d++++e+ e++
  KKY21615.1 104 LKAMRWGLIPFWTKRSPDYGsmMRTINCRDDSLIEnRGMWNTMKQRKRCIVICQGFYEWlKkgPGGKEKIPHFVKRKDGQLMCFAGLWDCVRYEDAEDS 202
                 *************997666445************99***********************842355599************************9999*** PP

        SRAP 151 lytytiiTteankqlaelHdRmPviLee..eelraWLdp.rkedskelqellkpaeeeelevypVskeVnkv 219
                 lytytiiTt++n+ql++lHdRmPvi+++  +e+++WLdp r ++skelq llkp+e+ +le+ypVsk+V+kv
  KKY21615.1 203 LYTYTIITTDSNPQLRFLHDRMPVIFNAgsKEMATWLDPgRATWSKELQILLKPFEG-KLECYPVSKDVGKV 273
                 **************************7778*************************99.************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1100  (0.0613531); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 2855.69
//
Query:       KKY21616.1  [L=678]
Description: putative hypoxia up-regulated protein 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.49
# Mc/sec: 4165.88
//
Query:       KKY21617.1  [L=558]
Description: putative sugar transporter stl1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.5e-107  360.3  21.9   1.8e-107  360.0  21.9    1.0  1  Sugar_tr  Sugar (and other) transporter
    1.3e-16   60.5  29.0    5.4e-12   45.3   2.0    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.0  21.9    2e-111  1.8e-107      10     452 .]      28     479 ..      19     479 .. 0.94

  Alignments for each domain:
  == domain 1  score: 360.0 bits;  conditional E-value: 2e-111
                 HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH............HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr  10 llfgYdtgvigafltllkfaknfglsksksskee.........ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 llfgYd gv+g+ ltl +f+k f    ++++  +          s+ +g++v++++vG+++G+++  ++gd++GR+  +  +++++viga+lq +a   
  KKY21617.1  28 LLFGYDQGVMGGLLTLESFVKVFPEIDTTAAGLAglnqaqqnhRSTIQGISVASYNVGCFCGAVTCIWIGDKLGRRRNIFLGSFIMVIGAILQCTAF-- 124
                 89****************99999866555544447999****99999**************************************************.. PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-.TTHHHHHHHCCHHHHHHHHHHGGGS---HHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn.adgwrillglqlvpallllilllflPESPry 197
                  s+  +ivgR+++G+g Gl + +vP+++sE ++ + Rg+lv++    it Gi +++++++g++  +  +  wr+++++q+v+all+l+++l lPESPr+
  KKY21617.1 125 -SLPHFIVGRLITGFGNGLNTSTVPTWQSECSKSHRRGQLVMVEGALITGGICLSYWIDFGMSFAEPsQASWRFPIAFQIVFALLILAFILELPESPRW 222
                 .9************************************************************998888899**************************** PP

                 HHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH......HTTHHHHSH.....HHHHHHHHHHHHHHTTHHHHHHHTTTHHHH.SS-THH..H CS
    Sugar_tr 198 lvekgkeeeakevlaklrgeedadrelaeekdsleaeqeee.kaswkellsskt..vrqrlligvvlqifqqltGinaimyysptifen.lglsks..l 290
                 l+ kg+e+ea  vl+ l + + +d+++  e+++++ ++ e    s k l+++    ++ r+ +g v q+fqq +Gin i+yy+ ti+en +gls     
  KKY21617.1 223 LILKGREDEALDVLSALSDLPAEDPYVHSEFSAIKDTVLEMkDSSFKDLFTMGPdrNFHRVALGYVNQVFQQISGINLITYYAATIYENeIGLSGFlsR 321
                 ************************************98877799999999995599*******************************975788877555 PP

                 HHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHH CS
    Sugar_tr 291 lvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskala 389
                 +  +  g+  f+a+ +a+f+++++GRR+l+l+Gaagm+i +++l+  ++  v + +a +iva +f+++f  +fa+gw ++ w++ +E+ p+++R+ a a
  KKY21617.1 322 ILAACNGTEYFLASWIAVFIIEKTGRRKLMLFGAAGMSISMALLA--VMTKVGG-SACGIVAAAFLFIFNTFFAIGWLGMTWLYPAEIVPLKIRAPANA 417
                 6677778889**********************************9..4444444.468***************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 390 iavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 +++ +nw +nf + +++p+ +++ig + ++++fa+++++ + +v+ff+pet+ r+lee++++f
  KKY21617.1 418 LSTSANWAFNFMVVMITPVSFSSIG-YQTYIIFAVINAFIFPVVYFFYPETAYRSLEEMDTIF 479
                 *************************.**********************************987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   2.0   6.1e-16   5.4e-12      30     187 ..      71     229 ..      29     274 .. 0.76
   2 !   20.8  19.4   1.7e-08   0.00015      13     176 ..     299     468 ..     286     487 .. 0.78

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 6.1e-16
       MFS_1  30 spseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllll.fasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigll 126
                   + +g+ ++ y +g++ +++   +++d++Grrr ++lg +++++g +l ++ f  sl+ ++v+r+++G+g g+ ++++ ++ ++ ++  +rg+ + + 
  KKY21617.1  71 RSTIQGISVASYNVGCFCGAVTCIWIGDKLGRRRNIFLGSFIMVIGaILQCTaF--SLPHFIVGRLITGFGNGLNTSTVPTWQSECSKSHRRGQLVMVE 167
                 4566899999************************55555555555524444434..5777***********************************9555 PP

       MFS_1 127 sagfslGailgpllgglla....sslgWravfyilaivsllafvlfllllpeepperkrkspkee 187
                 +a +  G+ l + +   ++    s+++Wr +  +  +++ll +    + l  ++++r+   + +e
  KKY21617.1 168 GALITGGICLSYWIDFGMSfaepSQASWRFPIAFQIVFALLILA---FILELPESPRWLILKGRE 229
                 55555555555544433332022555599999999999988855...777777777777666555 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 1.7e-08
       MFS_1  13 silgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa....sslw.lllvlrvlqGlgagalfpa 105
                 ++++  +  ++ ++ g+s+    +l+++ +  +++as ++ +++++ Grr+++l+g+++++++++ll+ ++    s    + +++ ++   + ++++ +
  KKY21617.1 299 NLITYYAATIYENEIGLSGFLSRILAACNGTEYFLASWIAVFIIEKTGRRKLMLFGAAGMSISMALLAvMTkvggSACGiVAAAFLFIFNTFFAIGWLG 397
                 3444444448899999***********************************************555554745544333333333333444444666666 PP

       MFS_1 106 ga.aliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeep 176
                 +   + a+++p + r+ a++l ++++ +   +  ++ ++  ss+g++ +++i+a++ ++ f ++++++pe++
  KKY21617.1 398 MTwLYPAEIVPLKIRAPANALSTSANWAFNFMVVMITPVSFSSIGYQ-TYIIFAVINAFIFPVVYFFYPETA 468
                 662456999999*******9999988888888888888888899997.9***********999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.52
# Mc/sec: 3203.27
//
Query:       KKY21618.1  [L=201]
Description: putative low molecular weight phosphotyrosine protein phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-32  111.2   0.0    7.9e-32  110.6   0.0    1.3  1  LMWPc     Low molecular weight phosphotyrosine protein phosph


Domain annotation for each model (and alignments):
>> LMWPc  Low molecular weight phosphotyrosine protein phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.0   4.4e-36   7.9e-32       1     141 [.      13     182 ..      13     183 .. 0.90

  Alignments for each domain:
  == domain 1  score: 110.6 bits;  conditional E-value: 4.4e-36
                 EEEEESSSSSHHHHHHHHHHHHHHHTT-CC..CE.EEEEEESTST.TT-B--HHHHHHHHHTTS--TT-BB-BS-HHHHHHSSEEEESSHHHHHHHHHH CS
       LMWPc   1 vlfvClgNicRSpmAealfrkelekaglee..kv.evdSaGtgal.vgkradpravevlkekgislsghvarqlskeelaelDlilamdeenkrelesl 95 
                 vlfvClgNicRSpmA  +f + l     ++  ++  +dS+Gtga+   +++d+r+++vl+ + i   +h ar++++++++e+D+il md+ n+ +l++l
  KKY21618.1  13 VLFVCLGNICRSPMAHGVFLHHLSSLPPSQrsRFgVIDSCGTGAYhTHEPPDYRTMSVLESHEITGFEHGARKIRTRDFEEFDYILGMDGMNLSDLRRL 111
                 89*******************9988644441145789****************************999******************************9 PP

                 CCT.......TGGGGEEEGGGG...............SSTSS...---HTTSSHHHHHHHHHHHHHHHHHH CS
       LMWPc  96 ape.......kekakvkllgey...............teqld...ieDPyygeieafeevldeieeavkkl 141
                 + +       +++akv l+g++               ++++d   + DPyyg++e+feev++++ +++k++
  KKY21618.1 112 EQRrglvegdTQRAKVSLFGKFggkqsngrgrrgadgGQDWDgeeVIDPYYGGDEGFEEVFEQVDRFSKAF 182
                 9887777788899***********************96666433399*********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.51
# Mc/sec: 1183.71
//
Query:       KKY21619.1  [L=340]
Description: putative phytanoyldioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-47  162.9   0.1    2.3e-47  162.0   0.0    1.5  2  PhyH            Phytanoyl-CoA dioxygenase (PhyH)
  ------ inclusion threshold ------
      0.073   13.5   0.3       0.84   10.1   0.0    2.3  2  2OG-FeII_Oxy_5  Putative 2OG-Fe(II) oxygenase


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.0   0.0   2.6e-51   2.3e-47       1     210 [.      31     295 ..      31     296 .. 0.89
   2 ?   -2.7   0.0      0.67     6e+03     163     187 ..     306     330 ..     301     332 .. 0.62

  Alignments for each domain:
  == domain 1  score: 162.0 bits;  conditional E-value: 2.6e-51
                 HHHHSEEEETTSS-HHHHHHHHHHHHHH..........................HHHCHTTCCSEEEEECEEESTTCCCEE.........CCCHHCHHH CS
        PhyH   1 feedGylviegflsaeevealraeieal..........................ldralesgdkidfffeekaaadedgll.........eksinkvgh 64 
                 f edGyl++++ l++e+++ l++ ++++                          +d++l sgdk++fffee+a++    +          ek+ink+gh
  KKY21619.1  31 FYEDGYLILPDYLTQETCKDLLDHTHEMlstfdlsshpmtkfstgdadgehhvgDDYFLTSGDKVRFFFEEDAFKPSPTNPaesvlskpkEKAINKIGH 129
                 789***********************************************************************9843333688899************ PP

                 HTTH...............HHHHHHHHHHHTSCEEEEEEEEEEEEEEEE-TTTCB-EEEEE-SGGGSTEESGCCEEEEEEESS-B-TTBT-EEEETTGG CS
        PhyH  65 flhp...............rkvadlvrailgqdvyvaavlqsmyqdifkqpkiGgevqpwHqDstflptdpeesvvgvwialedateenGclrfiPGSH 148
                  lh                 + a+++r++  qd+   + lqsm+  i+kqp+iGg+v p HqDstfl+tdp +s+vg+wialedat +nGcl+f  GSH
  KKY21619.1 130 SLHTvshpysqishlghvgSRNAAIARDLGFQDP---RILQSMV--ICKQPEIGGAV-PSHQDSTFLYTDP-PSAVGFWIALEDATIQNGCLSFAKGSH 221
                 ****999997776665555555555555544444...78*****..***********.************9.*************************** PP

                 GS-CCGTCCHHCSGCCTTS............CCCTTTGHGSCEEEE.BTTTEEEEEETTSEEEE-TB.SSSXEE CS
        PhyH 149 kweegplrrrlpeddteae............ddeakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdksRr 210
                 +++++ +r  ++  d + +             ++++ +dee +   ev aG++vl+hg++lH+s+ N+s+ksR 
  KKY21619.1 222 RRANIGSRFVRKGGDSQGTtfvetktqwprnFKTEEPKDEEVFDIGEVTAGTLVLIHGNVLHKSEKNLSQKSRF 295
                 *****999999988888889*********97555555566677778**************************95 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.67
                 CCTTSCCCTTTGHGSCEEEE.BTTT CS
        PhyH 163 dteaeddeakkedeeeavpvevkaG 187
                 d+++e +e + +de+++ +++  +G
  KKY21619.1 306 DATEENGEGWVYDEKNWLQIPGGPG 330
                 3333346667777777777776666 PP

>> 2OG-FeII_Oxy_5  Putative 2OG-Fe(II) oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1     0.064   5.8e+02      12      50 ..     130     170 ..     123     199 .. 0.63
   2 ?   10.1   0.0   9.4e-05      0.84      25     100 ..     227     299 ..     215     300 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.064
  2OG-FeII_Oxy_5  12 ahkaHiHpnsvlSgvyYlsvpkea..galkledpr..lavelg 50 
                     + ++ +Hp s +S    +   ++a  ++l ++dpr  +  +++
      KKY21619.1 130 SLHTVSHPYSQISHLGHVGSRNAAiaRDLGFQDPRilQ--SMV 170
                     34444799999999999988886556888889988532..322 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 9.4e-05
  2OG-FeII_Oxy_5  25 gvyYlsvpkeagalkledprlavelgaparkeeakeenqslvdvkpkeGdlvlFPswlrHevlpnegeeeRisisf 100
                     g  +++ + +++ + +++ + ++  + ++   e++++++ +   + ++G+lvl    + H+  +n ++++R ++ f
      KKY21619.1 227 GSRFVRKGGDSQGTTFVETKTQWPRNFKT---EEPKDEEVFDIGEVTAGTLVLIHGNVLHKSEKNLSQKSRFIYTF 299
                     56677777777777777777666644442...334445555566899************************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2397.81
//
Query:       KKY21620.1  [L=196]
Description: hypothetical protein UCRPC4_g03571 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 1285.79
//
Query:       KKY21621.1  [L=369]
Description: putative transmembrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-12   47.0   1.7    4.3e-10   40.1   1.7    2.1  1  EI24      Etoposide-induced protein 2.4 (EI24)


Domain annotation for each model (and alignments):
>> EI24  Etoposide-induced protein 2.4 (EI24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   1.7   2.4e-14   4.3e-10      14     177 ..      47     292 ..      35     292 .. 0.67

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 2.4e-14
                 TTHHHHHHHH.HHHHHHHHHHHHHHH.........-.............TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.H........ CS
        EI24  14 kllallllpl.llnlllfllllvlll.........w.............vllasllvllllllplwlfplvalllaapfygllaekvekrh........ 81 
                 +++ ++ +p+ l+ +ll++l     +         w             ++  + +++ l++l+  l+p++ +l++  + ++   +v+k h        
  KKY21621.1  47 GIRTVVNVPIyLVKFLLLVL-----SffinfdqvtWddklvsgldflanSV--LQIPFVLMTLMSHLTPTLDNLFMDSLQWVDQTYVQKHHsddpkqlr 138
                 45555555553344444442.....13345799997888888888664433..4478999999999*********************986666666665 PP

                 ...H..................CCTTSHHHHHHHHHHHHHHHHHHHHH.HHTTHHH....HHHHH.............HHHHHHHHHHHHHHH...... CS
        EI24  82 ...l..................glvkslaeslkslllllllllvllpl.liPvvglilsplllsw.............ltayfycfeyldlaa...... 139
                    +                  glv +    + +      + l +++l ++Pv+g ++ p+++++             +             +      
  KKY21621.1 139 amyYpnlrmysthgpvekkkkaGLVDTAIVFAERYGKRAAISLAIYALsFVPVIGRFVLPAASCYtfnkavgpvpaaiV-------------Fgggmfl 224
                 555055555566666666777666665554455555555555555556566**************55555555555550.............4555555 PP

                 ...........................HH...-HHHHHHHHHCTHHHHHHHHHHHHHHTTSCCHHCTH CS
        EI24 140 ...........................gr...sleerrallerrrayflgfGllvslllliPllnllf 177
                                            +r   + e++++++ +r + ++gf l++++++ +P+l++l+
  KKY21621.1 225 prrylvsflqtyfasrnlmrellrpyfSRvhfTAEQKKRWFIDRSGVLFGFSLAFAIMVKVPFLGVLI 292
                 55555555555556666655555554444777*********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.57
# Mc/sec: 1950.04
//
Query:       KKY21622.1  [L=764]
Description: hypothetical protein UCRPC4_g03573 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-34  116.8   0.0      7e-34  116.8   0.0    3.6  3  Inp1      Inheritance of peroxisomes protein 1


Domain annotation for each model (and alignments):
>> Inp1  Inheritance of peroxisomes protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8   0.0   3.9e-38     7e-34       4     137 .]      48     176 ..      45     176 .. 0.96
   2 ?    0.5   0.4     0.032   5.7e+02      22      58 ..     286     325 ..     267     327 .. 0.52
   3 ?   -2.1   0.9      0.19   3.5e+03      13      46 ..     557     593 ..     552     604 .. 0.55

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 3.9e-38
        Inp1   4 tLFkhpnvkvisflaegsssssssssaeasdvdsesessetllwksktertiAkgpLeIyripqsvafLsvGsivhpiLpklqvwrvddeeskfvlrie 102
                 +L++h++ k +sf+++g      ss+++++d d++++++etl w+ + e++ Akg L I+++++s  fL+ G++vh+iL+++q+w+v d+ skfvlr+ 
  KKY21622.1  48 ILYSHSSTKTFSFSPPG---IDGSSKPASRDFDYPVDAIETLRWTAPLETMEAKGLLIIEKVAGSAIFLKTGKVVHAILKNSQCWCV-DGDSKFVLRV- 141
                 79**************9...788888899**********************************************************.8889******. PP

        Inp1 103 nperywrIelpqeseeekelveeleevlskilqfe 137
                 ++ +y+rIelp++   +k+++eel++vlskil+fe
  KKY21622.1 142 RQFKYYRIELPNTAPGDKQKIEELKSVLSKILRFE 176
                 8888******************************7 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.032
        Inp1  22 ssssssssaeasdvdsesesse...tllwksktertiAkg 58 
                 +s+ ++s++  +d++se++ +e   + +++s+++ +++kg
  KKY21622.1 286 DSEDQESEELDEDEESEEGDTEaeeSSAFRSSPDALMSKG 325
                 22222222222222333332224567899****9999998 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.19
        Inp1  13 visflaegsssssssssaeasdvdsesesse...tll 46 
                 v sf ++gss s s ss++ s+ d+++++ +   +++
  KKY21622.1 557 VASFRSTGSSLSASPSSSNPSSPDTNVKHKRqlsQIT 593
                 5567777755555555555555555554433332333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1037  (0.0578393); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.09u 0.40s 00:00:01.49 Elapsed: 00:00:00.56
# Mc/sec: 4125.87
//
Query:       KKY21623.1  [L=881]
Description: putative nuclear protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-23   82.9   0.6    3.6e-23   82.3   0.6    1.3  1  MIF4G     MIF4G domain
    1.7e-22   79.5   0.1    3.6e-22   78.5   0.1    1.6  1  MA3       MA3 domain
  ------ inclusion threshold ------
      0.022   15.1   2.2        1.1    9.6   0.7    2.6  2  OmpH      Outer membrane protein (OmpH-like)
      0.046   12.9   0.0        0.1   11.8   0.0    1.5  1  Pox_P35   Poxvirus P35 protein


Domain annotation for each model (and alignments):
>> MIF4G  MIF4G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.6     8e-27   3.6e-23       2     212 .]     344     543 ..     343     543 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 8e-27
                 HHHHHHHHCHTTTTHHHHHHHHHHHHHCS.CHHHHHHHHHHHHHHHHHCG....GGHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHC-S-HHHHH CS
       MIF4G   2 kkvkgilnklskenfevlikqllklamdd.dknelkevielifekaveep....sfsplyarlcgklnsrfqqnFrikllnklqeefekryelenelee 95 
                 + ++g +nkls  n+ +++ ++ kl++++ +++  ++vi+l+     +++    +f+ l a++++++++ + ++F++ ++++l+ +++k         +
  KKY21623.1 344 RQLQGQINKLSEANILSIVGEIEKLYQTNpRQDVTTTVIDLLLGAFSDRSqlqnTFVILHATFISAIYKVVGTDFGAEVVARLVSQLDK------YHTS 436
                 678999************************999*********999999999999***********************************......7899 PP

                 HHHHHHHHHHHHHHHHHHHHHTTSSEHHHHHHHHHHHHHGGCCCCSCCHSCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCH..CS CS
       MIF4G  96 nedgnrrrrlglvrflgelfklkmltskilldclkellssltketaddppqdleeieilltllttigktlennekakkeldqffkriqkiledat..rq 192
                 + +++++++ +l+ ++++l+ ++++ ++ l+d ++ +l  + +          ++ e+ll++++ +g++l+  +++++ l+ ++  +q  l +at    
  KKY21623.1 437 DTESHSKEQVNLISLMSYLYTFHVIGTALLFDYIRLFLTTVSE----------SNTELLLRIIRDCGPQLR--QDDPATLKDIVLVMQGTLAEATkeNR 523
                 999****************************************..........******************..***********************999 PP

                 SSSHHHHHHHHHHHHHHHTT CS
       MIF4G 193 elssrirfmlkdlielkknk 212
                  +s r++fm++ + +lk+nk
  KKY21623.1 524 PVSVRTKFMVETITDLKNNK 543
                 *******************8 PP

>> MA3  MA3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.1     8e-26   3.6e-22       1     112 [.     645     763 ..     645     764 .. 0.94

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 8e-26
                 HHHHHHHHHHSSS...SHHHHHHHHHHTT--.TTHHHHHHHHHHHHHHS.SS--HHHHHHHHHHHCC-HHHHHHHHHHHHHHHHGGGGS-HH....... CS
         MA3   1 lrrkifliieeylssgdyeeavsklekLklp.kqeheivkillecaleesktyneyygllleklceknlilkkqfekgfwdvlesledleld....... 91 
                 +rr+if+ i+++    dy++a  +l+kL l+ +qe ei+++ll+c   e +tyn+yy l+ ++lc+ n+  + +f++++w++++ l             
  KKY21623.1 645 VRRSIFIAIMSAS---DYKDAHLRLMKLRLKkSQELEIPRVLLHCSGGE-ETYNPYYTLISKQLCSDNRKMRMSFQFALWNFFKRLGERPDEeedeenv 739
                 59***********...*********************************.**********************************88654444555**** PP

                 ......HHHHHHHHHHHHHHTTSS CS
         MA3  92 ...ipeairnlaefvarlisediL 112
                     ++ i nl++++a+li+++i+
  KKY21623.1 740 esvEMKEIVNLGKMFAHLIIDGIV 763
                 **99*****************986 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.7   0.00025       1.1      24      84 ..     143     229 ..     135     234 .. 0.82
   2 ?    4.0   0.0     0.013        57      87     137 ..     335     384 ..     295     385 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00025
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.......................-HHHHHH....HHHHHHHHHHHHHHHHHHHH CS
        OmpH  24 lekkfkklqaeleakekelqklqeelqkkakkl.e.....................keekeqe....lqkkeqelqqkqqqkaqelq 84 
                 l+k++++++++l++  +e+ +l+++l  k kkl +                     ++++++e    lq+k+++ q+  + +++e++
  KKY21623.1 143 LDKTSRSYKEQLARDDAEIAALEKKLGIKGKKLpKsfdddlaflldglddidgeseERKRKREgdewLQNKRKRAQATPRVAEEEIM 229
                 89999999****************999999998879999*************99763333333679**********94444446665 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.013
                 HHHHHHHHHHHHHHHHHHHHHHTT-SEEEE.GGG-S---GGGB-HHHHHHH CS
        OmpH  87 qqellkpildkinkaikevakekgydlvldsrgavlyaddklDiTdeVlkk 137
                 ++e l+++  +++  i+++ +++ +++v +  + ++ ++++ D+T  V++ 
  KKY21623.1 335 ENESLQRLRRQLQGQINKLSEANILSIVGE-IEKLYQTNPRQDVTTTVIDL 384
                 466778888999999999999999999988.66665559999999999976 PP

>> Pox_P35  Poxvirus P35 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.3e-05       0.1      58     108 ..     675     724 ..     647     759 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.3e-05
     Pox_P35  58 kelsaaykvveWkkgdienykeyfsdlCkllCteetkrsiakHlsLWesia 108
                 +el++  +v+    g+ e y+ y++ + k lC+++ k +++  ++LW+ + 
  KKY21623.1 675 QELEIP-RVLLHCSGGEETYNPYYTLISKQLCSDNRKMRMSFQFALWNFFK 724
                 444433.344444688899****************************9764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (881 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.52
# Mc/sec: 5069.29
//
Query:       KKY21624.1  [L=260]
Description: putative short-chain dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-41  142.9   0.1    1.4e-41  142.6   0.1    1.0  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    8.2e-38  129.8   0.0    1.2e-37  129.3   0.0    1.3  1  adh_short      short chain dehydrogenase
    2.9e-07   30.6   0.1    4.7e-07   29.9   0.1    1.3  1  KR             KR domain
     0.0053   16.3   0.0     0.0078   15.8   0.0    1.2  1  Prenyltransf   Putative undecaprenyl diphosphate synthase
  ------ inclusion threshold ------
       0.15   11.5   0.0        1.6    8.0   0.0    2.1  2  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.6   0.1     4e-45   1.4e-41       4     234 .]      13     258 ..       9     258 .. 0.92

  Alignments for each domain:
  == domain 1  score: 142.6 bits;  conditional E-value: 4e-45
                   TSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.E.......EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG.CSS-GGG. CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.v.......lecDVtdeeqvealveevvekfgklDilvnnagiapk.lkgpfle. 89 
                    g+G+a++k+la++  ++v+ + ++e+ + +v+++ e+++++ +       +++DVt ++ +++lv+e+ ++fg+lD++v n g+++     +f+e 
    KKY21624.1  13 AGLGAAVVKQLAAKSFNIVINYHSRESkALEVAQACESISSSpAstpryhiVKADVTTRAGIQHLVSETIKQFGRLDVVVSNTGYTRMtNFMKFEEg 109
                   79*************************888999999998854433456677*************************************766667664 PP

                   H-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC.........CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCT CS
  adh_short_C2  90 tsreefdraldvnlyslfllakaalplmkeg.........gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTl 177
                   + +e++dr + +n+++ + l +aa+p++++          gs v+++s+++ +   +   yg++Kaa ++l+++lAv +gp  iR+N+vspg++ T+
    KKY21624.1 110 CLEEDWDRCFTTNVKAHLWLFEAAKPYLEKAyeesggqnrGSFVTIASTAGIKPSGSSLPYGVSKAAQIHLSKCLAVICGP-SIRINTVSPGLMLTE 205
                   588***********************87766677789999*****************************************.*************** PP

                   GGGGSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 178 aasgikgfdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                     s+++   e +e+++++a l+ + ++++va +++ L  +    itGq++vvDgG++
    KKY21624.1 206 WGSKFP--AERIEAMKEKATLKMVSEVDDVAGTVVELSTNG--SITGQNFVVDGGFS 258
                   *****9..88999************************9866..7***********96 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.3   0.0   3.4e-41   1.2e-37       1     189 [.       4     209 ..       4     215 .. 0.92

  Alignments for each domain:
  == domain 1  score: 129.3 bits;  conditional E-value: 3.4e-41
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT......TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S...S- CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee......gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi...tg 89 
                 kv+lvt  s+G+G a++k+la++ +++v+ + ++e+k+ eva+ +++         +++++++Dvt+r+ ++ lv++ +k++g+ldv+v N+G    t+
  KKY21624.1   4 KVALVTASSAGLGAAVVKQLAAKSFNIVInYHSRESKALEVAQACESIssspasTPRYHIVKADVTTRAGIQHLVSETIKQFGRLDVVVSNTGYtrmTN 102
                 89*******************************************9987655444569************************************66666 PP

                 -SSGGGCSHHH.HHHHHHHHTHHHHHHHHHHHHHHH.......HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEES CS
   adh_short  90 sgpfselseee.wervievNltgvflltravlpaml.......kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPG 180
                 + +f+e + ee w+r++ +N+++ ++l +a+ p++         q++G+ v+++S+ag +p+ +  +Y+ sKaa ++l+++la    p+ ir+n+v PG
  KKY21624.1 103 FMKFEEGCLEEdWDRCFTTNVKAHLWLFEAAKPYLEkayeesgGQNRGSFVTIASTAGIKPSGSSLPYGVSKAAQIHLSKCLAVICGPS-IRINTVSPG 200
                 666777777777**********************99999999999*******************************************8.********* PP

                 SBSSHHHHH CS
   adh_short 181 lvdTdmake 189
                 l+ T+   +
  KKY21624.1 201 LMLTEWGSK 209
                 ****98766 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.1   1.3e-10   4.7e-07       4     143 ..       7     164 ..       5     182 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.3e-10
                 EEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS..--HHHHHHHHHHHHTT-...EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TT CS
          KR   4 litGGlGgLGlelarwlaekg.arhlvllsRsaaadedskaliaelealga...evevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklle 98 
                 l+t    gLG +++++la+k  +  + + sR+++a e  ++  ++++++ a   + ++v+aDv+ ++ +++l++e  ++++++  v+   g +r + ++
  KKY21624.1   7 LVTASSAGLGAAVVKQLAAKSfNIVINYHSRESKALEV-AQACESISSSPAstpRYHIVKADVTTRAGIQHLVSETIKQFGRLDVVVSNTGYTRMTNFM 104
                 8899999************9967777789999655544.55677777665544599**************************************99998 PP

                 T--....HHHHHHHHTTTTHHHHHHHHHTTT...........S--SEEEEEEEHHHHH-- CS
          KR  99 emt....aedleqvlapKvkGawnLhelled...........esldffvlfSSiagllgs 143
                 + +    +ed+++++   vk+   L e+ ++           ++   fv+++S ag+  s
  KKY21624.1 105 KFEegclEEDWDRCFTTNVKAHLWLFEAAKPylekayeesggQNRGSFVTIASTAGIKPS 164
                 765222279*************99999987666556655666666667777777766555 PP

>> Prenyltransf  Putative undecaprenyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.2e-06    0.0078     117     188 ..      26     107 ..      11     128 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.2e-06
                   EEEEEEEEE-HHH....HHHHHHHHHHHTT..SSSG.....GGHSHHH.HHCTST.T..TSSS-SEEEEESS--S-TTSSTTT CS
  Prenyltransf 117 lvlniavnYgsrd....eiveavrelvkekseekkk.....eeideet.lekhly.takalpdpDlliRtsGeeRlSnFllwq 188
                     +ni++nY sr+    e+++a++++ ++ +++  +     +++++++ +++ ++ t k++  +D+++   G +R+ nF+ ++
    KKY21624.1  26 KSFNIVINYHSREskalEVAQACESISSSPASTP-RyhivkADVTTRAgIQHLVSeTIKQFGRLDVVVSNTGYTRMTNFMKFE 107
                   4689*******98666688888888855443222.1233332333333133333322234899*****************887 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00045       1.6       9      74 ..      15      81 ..       7      87 .. 0.75
   2 ?    1.2   0.0     0.053   1.9e+02     146     163 ..     163     180 ..     116     187 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00045
                   HHHHHHHHHHHCT-CCEEEEEEESS-...TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH CS
  GDP_Man_Dehyd  9 iGsylaelLlekgyevhgivrrsssf...ntgriehlakdpkeeleenlklhkgDltDssslerllaev 74
                    G+ ++++L +k +++++  +  +s     ++  e++ ++p    +++++++k+D+t ++ +++l++e+
     KKY21624.1 15 LGAAVVKQLAAKSFNIVINYHSRESKaleVAQACESISSSPA--STPRYHIVKADVTTRAGIQHLVSET 81
                   59999*******999877655444430114567778877775..468******************9986 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.053
                    -----SHHHHHHHHHHHH CS
  GDP_Man_Dehyd 146 pfyPrsPYaaaKlyadwi 163
                    p     PY+++K+++ ++
     KKY21624.1 163 PSGSSLPYGVSKAAQIHL 180
                    445567*******99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1842.97
//
Query:       KKY21625.1  [L=606]
Description: putative c2h2 type zinc finger domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-15   56.1   2.0    5.8e-15   55.0   2.0    1.5  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   2.0   3.2e-19   5.8e-15      13     248 ..     126     372 ..     108     404 .. 0.84

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 3.2e-19
  Fungal_trans  13 pilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektssd 109
                     +h  +f p+           +++ ll+ i+a+Ga +++++  ++   +      ++ +  ra   + +   + +++l i q +ll     + + +
    KKY21625.1 126 DWIHAGTFRPNQ----------CPAELLTPIIATGAVYQDQHVLRTIGYA------MLEQVRRAIPKTVDLHHTMVKDLDIQQGYLLQLETRQYCAN 206
                   568999999999..........***********************83333......334444666566666778899**********9999999999 PP

  Fungal_trans 110 ralher...hhgvavr.larslgLhrnpsyvgkks..........lwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddl 192
                    +++e+    +  av+ l+r   + r+++     +           wk+w++ +e+ +R+ +     D++ a+ ++ +pl++ s+++lpLP++d  l
    KKY21625.1 207 ARKVEMaeaAFQQAVTmLRRNRQFRRCEYGTIFPTpledpetledMWKKWAK-QEQKKRTVFHLLLHDVRAAFTFNTTPLIHFSELTLPLPESDY-L 301
                   999999999*******9999999999999988888*****************.******************************************.* PP

  Fungal_trans 193 wesddaseetlvetklsneeksrkiasfllaLkkilsk....................iagsllsiekqlqqrdlq 248
                   w +++a e+  ++     ++ s++++s l +L   l++                    i+gs   i ++ q+r lq
    KKY21625.1 302 WRANSAQEWAALY-----SRRSCLPPSRLPSLVDALQDitilstnaefldlnysmsivIHGSASLIFQHRQIRTLQ 372
                   *************.....89******************88888888888888888888888888888888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 3798.27
//
Query:       KKY21626.1  [L=474]
Description: putative dihydrolipoamide dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-69  234.4   8.1      2e-69  234.1   7.1    1.6  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    1.3e-40  138.0   0.2    3.3e-40  136.8   0.2    1.7  1  Pyr_redox_dim   Pyridine nucleotide-disulphide oxidoreductase
    1.1e-21   77.2   9.4    1.1e-20   74.0   0.7    3.1  3  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    1.1e-09   37.9  10.4    7.4e-07   28.6   4.7    2.6  2  GIDA            Glucose inhibited division protein A
    1.2e-09   38.1  12.6    4.8e-09   36.1   0.3    3.0  3  FAD_oxidored    FAD dependent oxidoreductase
    1.8e-09   37.3   7.7    6.7e-08   32.1   0.1    2.2  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    1.8e-09   37.7   4.5    5.8e-05   23.2   0.7    2.6  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    1.2e-07   31.2  12.4    6.6e-07   28.7   3.4    2.6  3  FAD_binding_2   FAD binding domain
    1.6e-07   30.8   5.4    0.00096   18.5   1.2    3.4  4  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
    3.4e-06   26.5   3.4    0.00012   21.4   0.1    2.4  2  Thi4            Thi4 family
    4.9e-06   25.5  16.3    0.00093   18.0   2.1    4.1  4  HI0933_like     HI0933-like protein
    0.00018   20.8   0.8        0.4    9.8   0.0    2.8  3  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
    0.00063   19.4  13.7      0.026   14.1   0.5    3.5  4  DAO             FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.015   14.4   6.2       0.15   11.1   0.4    2.7  2  Lycopene_cycl   Lycopene cyclase protein
      0.017   14.4   8.8       0.57    9.4   1.1    2.5  2  FAD_binding_3   FAD binding domain
      0.028   14.3   0.7      0.028   14.3   0.7    2.3  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
        0.6   10.6   4.0       0.82   10.1   0.1    2.9  2  NAD_binding_7   Putative NAD(P)-binding
        1.3    7.8   6.7        1.1    8.0   0.7    2.3  2  Trp_halogenase  Tryptophan halogenase
        2.6    6.4   4.6        1.1    7.5   0.7    2.2  3  FMO-like        Flavin-binding monooxygenase-like


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.1   7.1   2.1e-72     2e-69       1     294 []      10     336 ..      10     336 .. 0.96
   2 ?   -1.8   0.0       1.5   1.4e+03     190     222 ..     372     401 ..     363     425 .. 0.68

  Alignments for each domain:
  == domain 1  score: 234.1 bits;  conditional E-value: 2.1e-72
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCHHHCSHHHHCHHHHHHHHHHHHH.........................HHHHCHHHHCCC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlve....legtclnggcllskallgvaedaeias.........................evvkklnqgiel 69 
                  +d+v+iGgG+AG+ aa++++q g+k++++e    l+gtcln+gc++sk ll+ ++ +++++                         e v+ l++g+e+
   KKY21626.1  10 HDLVIIGGGVAGYVAAIKAGQEGLKTACIEkrgaLGGTCLNVGCIPSKSLLNNSHLYHQILhdtkkrgidvgdvklnlkqmmkakdESVSGLTKGVEF 107
                  589**************************9999*************************999*************************99********** PP

                  CHCCTCEEEEESCEEEEETEEEC.....TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  70 llgeevvkidpgkkkvklekkke.....gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaala 162
                  ll++++v++++g + +++e++++     g e+++  +++++AtGs++  +  pG+   +++  + ++s+ a+ l+++p++++v+GgG iG+E+A+++a
   KKY21626.1 108 LLKKNKVDYIKGTGAFVDEHTVKvnlidGGETTVRGKNILIATGSESTPF--PGL---TIDEKKVITSTGAIALEKVPNKMIVIGGGIIGLEMASVWA 200
                  **********************9*****9999************999877..999...7778899********************************* PP

                  HHT-EEEEEESSSSSS.TTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE....EEE.EEETTSCEEEESEEEE-S-EEES-HHCS.HCCT-EEE CS
                  xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
  Pyr_redox_2 163 klgkevtlveardrll.raldkelsaaleealekeGvevklgtsvkeidgnge....kle.vvledgeeidadlvvvavGvrpstelle.eklgleld 253
                  +lg+evt+ve + ++  +++d ++s+++++ l k+G++++l+t+v++ d+ +e    ++e  + ++ ++++ d v+va+G+rp te+l+ e++g+eld
   KKY21626.1 201 RLGAEVTVVEFLGQIGgPGMDADISKQAQKILAKQGIKFMLNTKVTKGDDSSElvklDVEaAKGGKAQTLEGDVVLVAIGRRPYTEGLGlENIGIELD 298
                  *************************************************99998844444666666666***************************** PP

                  ETTEEE--TTSBESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 254 erggivvdeflrtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                  e+ ++v+d+ +rt++p+i ++GD++    gp+la++A ++G
   KKY21626.1 299 EKKRLVIDQEYRTKIPHIRVAGDCT---FGPMLAHKAEEEG 336
                  *************************...**********998 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.5
                  HHHHHHTTEEEEESCEEEEEEETTEEEEEEETT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 190 eealekeGvevklgtsvkeidgngeklevvled 222
                  e++l++ Gv+ k+gt +  ++++ +   + le+
   KKY21626.1 372 EAELKAAGVNYKVGTFPFSANSRAK---TNLET 401
                  5678888888888888855555554...33332 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.8   0.2   3.5e-43   3.3e-40       1     110 []     355     464 ..     355     464 .. 0.99

  Alignments for each domain:
  == domain 1  score: 136.8 bits;  conditional E-value: 3.5e-43
                    BEEEEESSSEEEEEES-HHHHHHHHSGEEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHHTSB CS
  Pyr_redox_dim   1 iptvvftdpevasvGlteeeAkaagieikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedladti 96 
                    ip+v++t+peva+vG +e+e+kaag+++kvg+fpf+an+ra+++ et+g+vK + da+t++vlG+hi+Gp+age+i+e ++ai++g++ ed+a+t+
     KKY21626.1 355 IPSVMYTHPEVAWVGQNEAELKAAGVNYKVGTFPFSANSRAKTNLETEGMVKFLSDAETDRVLGVHIIGPNAGEMIAEGTLAIEYGASSEDIARTC 450
                    7*********************************************************************************************** PP

                    SSSSSTGGGGHCHH CS
  Pyr_redox_dim  97 hihPtlsealkeaa 110
                    h+hPtl+ea+keaa
     KKY21626.1 451 HAHPTLAEAFKEAA 464
                    ***********985 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   1.1     0.008       7.5       2      34 ..      12      44 ..      11      49 .. 0.91
   2 ?   -2.2   0.0       6.9   6.5e+03      45      59 ..     104     118 ..      87     127 .. 0.60
   3 !   74.0   0.7   1.2e-23   1.1e-20       1      71 [.     182     253 ..     182     264 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.008
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkl 34
                +v++GgG+ g  +A  + + g k+ ++e +  l
  KKY21626.1 12 LVIIGGGVAGYVAAIKAGQEGLKTACIEKRGAL 44
                79*************************998876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 6.9
                 HHHHHHHHTTEEEEC CS
   Pyr_redox  45 ilqeklekngievll 59 
                  ++  l+kn+++ + 
  KKY21626.1 104 GVEFLLKKNKVDYIK 118
                 233344555554444 PP

  == domain 3  score: 74.0 bits;  conditional E-value: 1.2e-23
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETT CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekngievllntkveeiegsed 71 
                 k++v+GgG iglE+A+++a+lg++Vtvve   ++  +++D+++sk  q+ l k+gi+++lntkv++ + s++
  KKY21626.1 182 KMIVIGGGIIGLEMASVWARLGAEVTVVEFLGQIGgPGMDADISKQAQKILAKQGIKFMLNTKVTKGDDSSE 253
                 689**************************************************************9997765 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   4.7   7.8e-10   7.4e-07       1     150 [.      11     152 ..      11     176 .. 0.68
   2 !   12.1   0.3     8e-05     0.076       2      28 ..     183     209 ..     182     266 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 7.8e-10
                 CEEEE-SSHHHHHHHHHHHHTT--EEEE...ES-GGGTT--SSSSEEE-TTHHHHHHHHHHHT-SHHHHHHHHEEEEEEESTTS-CCC-EEEEEE-HHH CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLi...thkldtiaelsCnpsiggiakgllvrEidalggliikaadkagiqfrilNrskGpavralraqvdrel 96 
                 d+++iGgG AG+ AA++a + G+k++ i       +t+++++C ps   + +++l ++i +      + +d   +++++      + ++a       + 
  KKY21626.1  11 DLVIIGGGVAGYVAAIKAGQEGLKTACIekrGALGGTCLNVGCIPSKSLLNNSHLYHQILH--DTKKRGIDVGDVKLNLK-----QMMKAK--DESVSG 100
                 689*************************87777789********************99966..44455555555533332.....111111..112233 PP

                 HHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEE.EEETTS-EEEECEEEE--TT CS
        GIDA  97 yskevteklenepnleiieeeveeliveekkvkg.vvtedgetikakavviatGt 150
                   k v+  l+ +++++ i+++ + ++  e++vk+ ++   ++t++ k++ iatG+
  KKY21626.1 101 LTKGVEFLLK-KNKVDYIKGTGAFVD--EHTVKVnLIDGGETTVRGKNILIATGS 152
                 3334433333.366777777666662..344444344555566677777777776 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 8e-05
                 EEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLi 28 
                 +iViGgG  G+e A   arlGa+v+ +
  KKY21626.1 183 MIVIGGGIIGLEMASVWARLGAEVTVV 209
                 79**********************988 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.3   5.1e-12   4.8e-09       1      48 [.      11      58 ..      11     152 .. 0.72
   2 !    6.2   3.7    0.0058       5.5       3      36 ..     184     217 ..     183     222 .. 0.95
   3 ?    0.3   0.0      0.37   3.5e+02      93     139 ..     228     275 ..     221     278 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 5.1e-12
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdig 48
                  D+v++GGg+aG++AAi A ++G k++ +e+rg lGG+  + +  +   
    KKY21626.1 11 DLVIIGGGVAGYVAAIKAGQEGLKTACIEKRGALGGTCLNVGCIPSKS 58
                  99**********************************987776655544 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0058
  FAD_oxidored   3 vVvGGgpaGvaAAiaAaraGakvlLveergvlGG 36 
                   +V+GGg+ G+  A   ar Ga+v +ve  g +GG
    KKY21626.1 184 IVIGGGIIGLEMASVWARLGAEVTVVEFLGQIGG 217
                   8********************************9 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.37
  FAD_oxidored  93 leemlaeagvtvllntrlvevekegkriesvtveske.g.rktirAkvf 139
                   ++++la++g++ +lnt++++ + +  ++ ++ ve  + g  +t++++v+
    KKY21626.1 228 AQKILAKQGIKFMLNTKVTKGDDSS-ELVKLDVEAAKgGkAQTLEGDVV 275
                   68899999**********9999885.89999999988778999999987 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   3.8    0.0034       3.2       1      33 [.      13      45 ..      13      50 .. 0.82
   2 !   32.1   0.1   7.1e-11   6.7e-08     120     305 .]     138     320 ..     124     320 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0034
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg.nig 33
                 +IiG+G aG  aai++ + gl++   +Ek  ++g
   KKY21626.1 13 VIIGGGVAGYVAAIKAGQEGLKT-ACIEKRgALG 45
                 7********************65.6777653665 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 7.1e-11
  Pyr_redox_3 120 ketyeAkkviiAtGefdkPnklnipGeeklvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienr 217
                  + t++ k+++iAtG  + P +++    ek+v+ +    ++ +   +k++ViGg+  + ++A   +r gaeVtvv    +i          + +di ++
   KKY21626.1 138 ETTVRGKNILIATGSESTP-FPGLTIDEKKVITSTGAIAL-EKVPNKMIVIGGGIIGLEMASVWARLGAEVTVVEFLGQIGGPG------MDADISKQ 227
                  568899*********5555.68999999666666666666.556789****************************999888875......55666666 PP

  Pyr_redox_3 218 leelvkeekikvlfnaevkeikekeeeykvk..tedgkkvev.kddvvla.tGykpdlsf..lkkslfeldedgrpvlteeteetnvpglflaG 305
                   +++++++ ik++ n++v++ ++++e +k+   +++g k ++ + dvvl+ +G +p ++   l++ ++elde++r v+++e   t++p + +aG
   KKY21626.1 228 AQKILAKQGIKFMLNTKVTKGDDSSELVKLDveAAKGGKAQTlEGDVVLVaIGRRPYTEGlgLENIGIELDEKKRLVIDQEY-RTKIPHIRVAG 320
                  666666666***********9999887765533555555444466666555*****998745677*********99999875.46677666665 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.7   6.1e-08   5.8e-05       1      36 [.      14      49 ..      14      69 .. 0.95
   2 !   15.5   0.2   1.6e-05     0.015       1      34 [.     185     218 ..     185     242 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 6.1e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraa 36
                   I+G+G++G vaA  + ++g++  ++ekr  lGG + 
     KKY21626.1 14 IIGGGVAGYVAAIKAGQEGLKTACIEKRGALGGTCL 49
                   9********************************996 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.6e-05
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGG CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGr 34 
                    ++G+G+ Gl +A+  a+ g++v+++e   ++GG 
     KKY21626.1 185 VIGGGIIGLEMASVWARLGAEVTVVEFLGQIGGP 218
                    8***************************999995 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   3.4     7e-10   6.6e-07       1      37 [.      11      47 ..      11      50 .. 0.96
   2 ?   -3.3   0.0       3.8   3.6e+03     176     200 ..     121     151 ..      97     157 .. 0.72
   3 !    8.0   0.7    0.0014       1.3       2      36 ..     183     217 ..     182     270 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 7e-10
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefgga 37
                   D+++iG+G+AG++AA++a ++Glk+a++ek ++ gg+
     KKY21626.1 11 DLVIIGGGVAGYVAAIKAGQEGLKTACIEKRGALGGT 47
                   89******************************99986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.8
                    EEEEEET......TTTCEEEEEESEEEE--- CS
  FAD_binding_2 176 Gavvenp......esgrevrirakavvlatg 200
                    Ga v +        +g+e+++r k++++atg
     KKY21626.1 121 GAFVDEHtvkvnlIDGGETTVRGKNILIATG 151
                    4444444444555889999999999999998 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0014
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgg 36 
                     iViG+G+ GL  A   a+ G++v+vve  ++ gg
     KKY21626.1 183 MIVIGGGIIGLEMASVWARLGAEVTVVEFLGQIGG 217
                    59**************************8888777 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   0.00015      0.14      30      61 ..      11      42 ..       4      71 .. 0.89
   2 !   18.5   1.2     1e-06   0.00096      22      58 ..     178     210 ..     164     212 .. 0.84
   3 ?   -0.7   0.0      0.76   7.2e+02     156     185 ..     215     244 ..     212     269 .. 0.76
   4 ?   -1.9   0.0       1.7   1.6e+03     127     149 ..     435     457 ..     434     460 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrp 61
                   ++iGgGvaG  A+  a + g k+  +++r 
   KKY21626.1 11 DLVIIGGGVAGYVAAIKAGQEGLKTACIEKRG 42
                 579***************99999998888775 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 1e-06
                  EETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEE CS
  AlaDh_PNT_C  22 gvpgvepakvlviGgGvaGlqAiatakglgakVtvlD 58 
                  +v    p k++viGgG+ Gl+ +++ ++lga+Vtv++
   KKY21626.1 178 KV----PNKMIVIGGGIIGLEMASVWARLGAEVTVVE 210
                  44....599*************************986 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.76
                  EEBSTGGGGSHHHHHHHHHHHHHHHHHHHC CS
  AlaDh_PNT_C 156 ygvanlpgavprtasalltnntlpyleell 185
                  +g + + + ++++a ++l+++ ++++++  
   KKY21626.1 215 IGGPGMDADISKQAQKILAKQGIKFMLNTK 244
                  778889999999999999999999998763 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.7
                  TTGGGT-SBTT--TBBTTSEEEE CS
  AlaDh_PNT_C 127 vAidqGGnvetsrltthgepvve 149
                  +Ai+ G + e+++ t h++p++ 
   KKY21626.1 435 LAIEYGASSEDIARTCHAHPTLA 457
                  79***************999976 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   1.3e-07   0.00012      17      70 ..       9      61 ..       5      94 .. 0.82
   2 !    5.5   0.6    0.0096         9      17      83 ..     180     238 ..     165     303 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.3e-07
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTTBSEEEEE CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGqlfsaivvr 70
                e D+vi+G+G +G  aa   +++ +lk+a +e++ ++GG     G + s+ +++
  KKY21626.1  9 EHDLVIIGGGVAGYVAAIKAGQE-GLKTACIEKRGALGGTCLNVGCIPSKSLLN 61
                89********************9.***************988877776666655 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0096
                 EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTTBSEEEEETTTHHHHHHTT-- CS
        Thi4  17 esDvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGqlfsaivvrkpakelLdelgik 83 
                    ++++G+G  GL  a + a+  + +v+++e    +GG     G+  +   + k+a+++L   gik
  KKY21626.1 180 PNKMIVIGGGIIGLEMASVWARL-GAEVTVVEFLGQIGG----PGMDAD---ISKQAQKILAKQGIK 238
                 456899****************9.99****997666665....233221...344444444444444 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   2.1   9.8e-07   0.00093       2      36 ..      11      45 ..      10      52 .. 0.92
   2 !    5.7   0.1    0.0053         5     142     185 ..     128     173 ..     102     183 .. 0.75
   3 !    6.8   1.3    0.0026       2.4       2      36 ..     182     216 ..     181     217 .. 0.90
   4 ?    2.8   0.0      0.04        38     116     182 ..     229     300 ..     221     314 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 9.8e-07
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 d+++iGgG AG  aAi+a+++g +++ +ek  +lg
   KKY21626.1 11 DLVIIGGGVAGYVAAIKAGQEGLKTACIEKRGALG 45
                 89****************************98887 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0053
                  .EEEEE...TTEEEEESEEEE----SS-GGGT--SHHHHHHHHTT- CS
  HI0933_like 142 kfrvkt.k.seeeleadklvlAtGGlSiPklGstgkgyklaeqfgh 185
                  +++v++ + +e++++ +++++AtG++S P  G t +  k+ ++ g 
   KKY21626.1 128 TVKVNLiDgGETTVRGKNILIATGSESTPFPGLTIDEKKVITSTGA 173
                  34444443278899***************99988888777777765 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0026
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36 
                  ++iviGgG  Gl  A   a+ g++V+++e   ++g
   KKY21626.1 182 KMIVIGGGIIGLEMASVWARLGAEVTVVEFLGQIG 216
                  68**************************9766665 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.04
                  HHHHHHHT-EEE-S--EEEEECETTE.EEEEE......TTEEEEESEEEE----SS-GG.GT--SHHHHHHHH CS
  HI0933_like 116 lkelkeagvklrletevksvekeedgkfrvktk.....seeeleadklvlAtGGlSiPk.lGstgkgyklaeq 182
                  +k l ++g+k++l+t+v++ + + ++ ++++++     ++++le d +++A+G   + + lG ++ g++l e+
   KKY21626.1 229 QKILAKQGIKFMLNTKVTKGDDS-SELVKLDVEaakggKAQTLEGDVVLVAIGRRPYTEgLGLENIGIELDEK 300
                  567899************99554.444666664456767899**********988765336666666666555 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.75     7e+02       2      35 ..       9      40 ..       8      44 .. 0.66
   2 !    9.8   0.0   0.00042       0.4     109     207 ..     101     196 ..      95     210 .. 0.72
   3 !    8.2   0.0    0.0013       1.2     286     339 ..     228     280 ..     224     283 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.75
  K_oxygenase  2 ilDligiGiGpsnLsLailleevkkelkalfler 35
                  +Dl++iG G++    ai + +    lk+  +e+
   KKY21626.1  9 EHDLVIIGGGVAGYVAAIKAGQEG--LKTACIEK 40
                 689999999988765555555444..66666665 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00042
  K_oxygenase 109 leeqvrfgeeveevepdeeeee..elltveskdaegeeeelearnlvlgvGtepk.iPevleklegkervvHsseylerkeellakkriaVvGsGqSa 203
                  l++ v+f  + ++v++ + ++   +  tv+++  +g e++++ +n+++++G+e +  P ++  ++ +++v+ s  +   +   + +++++V+G+G  +
   KKY21626.1 101 LTKGVEFLLKKNKVDYIKGTGAfvDEHTVKVNLIDGGETTVRGKNILIATGSESTpFPGLT--ID-EKKVITSTGAIALE---KVPNKMIVIGGGIIG 192
                  55556666666777777766665566788887799****************8765144444..45.47888887776665...6899999*****988 PP

  K_oxygenase 204 aeif 207
                   e++
   KKY21626.1 193 LEMA 196
                  8765 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0013
  K_oxygenase 286 eqkvkgeerlrllpnrevesaeaegkgeveltlrneesgeeetlevdavvlATG 339
                  +qk+  ++ ++++ n++v++ + +++  v+l+++  + g+++tle d+v++A G
   KKY21626.1 228 AQKILAKQGIKFMLNTKVTKGDDSSE-LVKLDVEAAKGGKAQTLEGDVVLVAIG 280
                  578888999***********999986.*************************98 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.5   2.8e-05     0.026       1      37 [.      11      47 ..      11      80 .. 0.85
   2 ?   -2.0   0.0       2.2   2.1e+03     157     207 ..     110     157 ..      99     174 .. 0.46
   3 !    9.2   3.2   0.00087      0.82       3      27 ..     184     210 ..     182     217 .. 0.93
   4 ?    1.5   0.0      0.18   1.7e+02     154     201 ..     230     280 ..     222     327 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.8e-05
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGG CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaS 37
                d+viiGGG++G  +A  + ++g  ++ +ek+  +g g +
  KKY21626.1 11 DLVIIGGGVAGYVAAIKAGQEGlkTACIEKRGALG-G-T 47
                89****************9999*********5555.4.3 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.2
                 HHTT-EEEESECEEEEEEEETCEEEEEEECT.EEE.EEEEEEEE--GGGHHHH CS
         DAO 157 ealGveilegtevtgleeedgkvwgverttp.gen.daadavVnaaGawsdll 207
                 +++ v+ ++gt +  ++e+    ++v +  + ge+ ++ + + +a+G  s+ +
  KKY21626.1 110 KKNKVDYIKGTGAF-VDEH---TVKV-NLIDgGETtVRGKNILIATGSESTPF 157
                 34444444442221.1121...2222.22222333223344888888776644 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00087
                 EEECTSHHHHHHHHHHHHTT..EEEEE CS
         DAO   3 viiGGGiiGlstAyeLarrg..Vtlle 27 
                 ++iGGGiiGl  A   ar g  Vt++e
  KKY21626.1 184 IVIGGGIIGLEMASVWARLGaeVTVVE 210
                 8***************9999******9 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.18
                 HHHHHTT-EEEESECEEEEEEEETCEEEEE.EECTEEE.E..EEEEEEE--G CS
         DAO 154 raaealGveilegtevtgleeedgkvwgve.rttpgen.d..aadavVnaaG 201
                 + ++++G+++ ++t+vt+ ++    ++++  ++++g + +  + d v +a G
  KKY21626.1 230 KILAKQGIKFMLNTKVTKGDDS-SELVKLDvEAAKGGKaQtlEGDVVLVAIG 280
                 447899************9553.33444444344433322233355777766 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   0.00016      0.15       1     140 [.      11     151 ..      11     166 .. 0.67
   2 ?    5.2   0.9      0.01       9.4       2      31 ..     183     210 ..     182     217 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieaspsllfpnnyvWsdefedlga...leecvehsWsgtivylddgkkillg.raYgrvsskrlkee 92 
                    D+v+iG+G Ag   A +    + glk  +ie    l  +   v +   + l +   l + + h  ++  + + d k  l++ ++ +  s + l + 
     KKY21626.1  11 DLVIIGGGVAGYVAAIKA--GQEGLKTACIEKRGALGGTCLNVGCIPSKSLLNnshLYHQILHDTKKRGIDVGDVKLNLKQmMKAKDESVSGLTKG 104
                    9************99999..**********987777555555777766666544455555556666666666666666555333344444557777 PP

  Lycopene_cycl  93 llerlvengvklleakvesveeeeageslvvleggr.kirarlvvdarg 140
                    ++  l +n+v + +++ + v e+++  ++  ++gg+ ++r++ ++ a+g
     KKY21626.1 105 VEFLLKKNKVDYIKGTGAFVDEHTV--KVNLIDGGEtTVRGKNILIATG 151
                    7777777777777777777777777..4444455555777777777777 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.01
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlie 31 
                    ++viG+G  gl +A     a+ g +v+++e
     KKY21626.1 183 MIVIGGGIIGLEMASVW--ARLGAEVTVVE 210
                    69************999..99999999997 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.3   0.00096      0.91       3      34 ..      11      42 ..       9      46 .. 0.92
   2 ?    9.4   1.1   0.00061      0.57       4     119 ..     183     336 ..     181     346 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00096
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                   d +I+G+G aG ++a    + G ++ ++ekr 
     KKY21626.1 11 DLVIIGGGVAGYVAAIKAGQEGLKTACIEKRG 42
                   678***************************85 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00061
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE.................... CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealyne.................... 79 
                     +++G+G  Gl  a++ ++ G +v++ve   +    +    ++++   +l + G++  +  + ++ + ++e+++ +                    
     KKY21626.1 183 MIVIGGGIIGLEMASVWARLGAEVTVVEFLGQIGGPGMDADISKQAQKILAKQGIKFMLNTKVTKGDDSSELVKLDveaakggkaqtlegdvvlva 278
                    589*************************88877766655555556668888888877777777777777777777677778888888888888777 PP

                    ..................CCCCCEEEEEHHCHHCST-CEE--HHHHHHHHHHHHHHHT CS
  FAD_binding_3  80 ..................lsdtpkaradlelesspervtvypqteleriLvehaeerg 119
                                      l++ ++  +d e +++ +++ v +   + ++L+++aee+g
     KKY21626.1 279 igrrpyteglglenigieLDEKKRLVIDQEYRTKIPHIRVAGDCTFGPMLAHKAEEEG 336
                    6666666666644444333333555566667788888888888888888888888877 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.1       3.1   2.9e+03       3      30 ..      13      40 ..      11      45 .. 0.87
   2 ?   14.3   0.7   2.9e-05     0.028       3      48 ..     184     238 ..     182     270 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.1
                EEE--SCCHHHHHHHHHHTT-EEEEE-S CS
     3HCDH_N  3 aviGaGtmGagiaavfasagleVvlvdi 30
                 +iG G+ G   a  + ++gl++  ++ 
  KKY21626.1 13 VIIGGGVAGYVAAIKAGQEGLKTACIEK 40
                69*********99999999999988875 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 2.9e-05
                 EEE--SCCHHHHHHHHHHTT-EEEEE-S.........-HHHHHHHHHHHHHHHHC CS
     3HCDH_N   3 aviGaGtmGagiaavfasagleVvlvdi.........seealekalekiekslek 48 
                  viG G++G ++a+v a+ g eV++v+          ++++ ++a++ ++k+  k
  KKY21626.1 184 IVIGGGIIGLEMASVWARLGAEVTVVEFlgqiggpgmDADISKQAQKILAKQGIK 238
                 69************************98666666655444444444444444444 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2       1.1   1.1e+03       7      31 ..       9      33 ..       6      51 .. 0.74
   2 ?   10.1   0.1   0.00087      0.82       8      36 ..     181     209 ..     174     286 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.1
  NAD_binding_7  7 gkkvlvvGgGevAarkvrklleaga 31
                   +   +++GgG  ++  + k  ++g 
     KKY21626.1  9 EHDLVIIGGGVAGYVAAIKAGQEGL 33
                   667899**99877766666655555 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00087
  NAD_binding_7   8 kkvlvvGgGevAarkvrklleagakvtvv 36 
                     k++v+GgG ++++ ++  ++ ga+vtvv
     KKY21626.1 181 NKMIVIGGGIIGLEMASVWARLGAEVTVV 209
                    6899************************6 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.7    0.0012       1.1       2      21 ..      12      31 ..      11      42 .. 0.79
   2 ?    2.8   0.7     0.045        43       1      32 [.     182     210 ..     182     246 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0012
                    EEEE--SHHHHHHHHHHHHH CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalaka 21
                    +vi+GGG aG++aA+  ++ 
      KKY21626.1 12 LVIIGGGVAGYVAAIKAGQE 31
                    79************976655 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.045
                     EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE CS
  Trp_halogenase   1 kivivGGGtaGwlaAaalakalkgklevtlve 32 
                     k++++GGG+ G   A++ a+ +   +evt+ve
      KKY21626.1 182 KMIVIGGGIIGLEMASVWARLG---AEVTVVE 210
                     5799*****************9...89**999 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.7    0.0012       1.1       4      38 ..      12      46 ..       9      55 .. 0.86
   2 ?   -3.4   0.1       2.5   2.4e+03       3      38 ..     182     217 ..     181     219 .. 0.71
   3 ?   -0.7   0.0      0.38   3.6e+02     110     148 ..     243     281 ..     222     310 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0012
    FMO-like  4 vaviGaGvsGlasikccleegleptcfersddiGG 38
                + +iG+Gv+G ++     +egl+ +c e+   +GG
  KKY21626.1 12 LVIIGGGVAGYVAAIKAGQEGLKTACIEKRGALGG 46
                679*******8665556699************999 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.5
    FMO-like   3 kvaviGaGvsGlasikccleegleptcfersddiGG 38 
                 k+ viG+G+ Gl         g e t  e   +iGG
  KKY21626.1 182 KMIVIGGGIIGLEMASVWARLGAEVTVVEFLGQIGG 217
                 678999999999776666666666666666666665 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.38
    FMO-like 110 csvkkrpdfstsGqwevvtekegkkesavfdavmvctGh 148
                 ++v+k  d+s+  + +v + k gk ++   d v+v  G 
  KKY21626.1 243 TKVTKGDDSSELVKLDVEAAKGGKAQTLEGDVVLVAIGR 281
                 5799***********************999*99999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.54
# Mc/sec: 2663.15
//
Query:       KKY21627.1  [L=609]
Description: putative phosphoglucomutase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-40  136.2   0.0    9.3e-40  135.5   0.0    1.3  1  PGM_PMM_I    Phosphoglucomutase/phosphomannomutase, alpha/bet
      7e-22   78.0   0.0    5.7e-21   75.1   0.0    2.5  3  PGM_PMM_II   Phosphoglucomutase/phosphomannomutase, alpha/bet
    8.8e-13   48.5   0.0    1.8e-12   47.4   0.0    1.5  1  PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/bet
    7.5e-07   29.2   0.0    1.7e-06   28.1   0.0    1.5  1  PGM_PMM_IV   Phosphoglucomutase/phosphomannomutase, C-termina


Domain annotation for each model (and alignments):
>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.5   0.0   2.1e-43   9.3e-40       2     136 ..      47     189 ..      46     191 .. 0.96

  Alignments for each domain:
  == domain 1  score: 135.5 bits;  conditional E-value: 2.1e-43
                 GGBBTTCEEEECCHCT..BSCCHHHHHHHHHHHHCHHC.....STS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEE.EB-HHHHHHHHHHCCEC CS
   PGM_PMM_I   2 qkfgtsGlRgkvgege..ltpelveklgqaiaeylkae.....akkkkvvvGrDtRvssrelaealaaglaanGvevillg.llptPavsfairklkad 92 
                 ++fgt+GlRg +++g   ++  +v  ++q+ia y+  +       + +v++G+DtR++s+e+a+ +a+ +a++G++v+l++ ++ptP vsf ++++ka+
  KKY21627.1  47 IQFGTAGLRGPMQAGFtaMNLVTVIGASQGIAMYMLDTmehrePSQLSVLIGHDTRHHSPEFARVAASAFASKGINVLLYEdYVPTPFVSFGVNYFKAN 145
                 58***********999899999999***********999988888999*************************************************** PP

                 EEEEE--TTS-TTCCCEEEEETTTCE--CHHHHHHHHHHCCT-E CS
   PGM_PMM_I  93 agimitaSHnppeyngiKvylsnGgpispeveekIeaiiekeee 136
                  gimitaSHnp+ +ng+Kvy+snG++i+++v+++I+++i k+++
  KKY21627.1 146 VGIMITASHNPKADNGYKVYWSNGCQINTPVDKQIADSIGKNQK 189
                 *************************************9988765 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0   1.3e-24   5.7e-21       2      99 ..     216     322 ..     215     328 .. 0.87
   2 ?   -2.2   0.0       1.4   6.5e+03      14      35 ..     398     419 ..     391     449 .. 0.73
   3 ?   -1.6   0.0      0.91   4.1e+03       3      56 ..     481     540 ..     479     563 .. 0.76

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 1.3e-24
                 HHHHHGGGTS-.....HHHHHHHT-EEEEE-TT-TTHHHHHHHHHHTT-...EEEES-----TT-TT.SS----TT-TTTTHHHHGGGGG-SEEEEE-T CS
  PGM_PMM_II   2 aYiealkekvd.....seaikksglkvvidplhGaggeilkellkelgv...dvvelnaepdpdfpt.kapnpeekealkllielvkkegadlglafDg 91 
                 aYi +lke ++     +e+ + s+  ++++plhG+g+ +++++ +++     +vv+++++pdp+f+t k+pnpee+ al+++i +++  +ad+++a+D+
  KKY21627.1 216 AYISRLKEVCQqrerpQETAELSSKPFLYTPLHGVGSFVMEKIARDVLHtavHVVPEQKDPDPEFSTvKFPNPEEPGALDAAISAADIVHADIIVANDP 314
                 688888888888766544444445569*******************777789*********************************************** PP

                 TS-BEEEE CS
  PGM_PMM_II  92 DaDRlgvv 99 
                 DaDRl+ +
  KKY21627.1 315 DADRLATA 322
                 *****988 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
                 HHHHHHT-EEEEE-TT-TTHHH CS
  PGM_PMM_II  14 eaikksglkvvidplhGaggei 35 
                 + ++++g+kvv+ + ++ g ++
  KKY21627.1 398 KSLTERGFKVVFGYEEALGYMY 419
                 5678899999998877777666 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.91
                 HHHHGGGTS-.HHHHHHHT-EEEEE-TT-TTHHHHHHHHHHTT-.....EEEES-----T CS
  PGM_PMM_II   3 Yiealkekvd.seaikksglkvvidplhGaggeilkellkelgv.....dvvelnaepdp 56 
                 ++e+l++++d +  +++ ++    d+  G + +i+++ l++ g       v+++++ pd 
  KKY21627.1 481 FFEGLRKTLDqNPSLAEMPFEKWRDVTRGYAYGIFDSPLQDPGSqmitcVVIPEHKMPDS 540
                 778888888877778888888888999999999999999998886666566667776665 PP

>> PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   4.1e-16   1.8e-12       1      98 [.     333     444 ..     333     459 .. 0.80

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 4.1e-16
                  HHHHHHHHHHHHHHCH...CSTTT...CEEEEETTS-THHHHHHHHTT-EEE..EESSSCHHHHHHHHHTT.....ECEEEETTCEEEETTTBSS--H CS
  PGM_PMM_III   1 dgdqllallakyllee...klkpg...agvvktvmtslalervakklgiklv..etkvGdkyvleemkeeg.....avlGgEeSghiifldeattkDG 85 
                  +gdql+++la y+ e    +  p+    ++ ++ ++s +l++ ++++g +++  et +G+k+++++ k+       +v+G+Ee  +++++  + +kDG
   KKY21627.1 333 TGDQLGVILAYYIIELeqaN--PSsqrVALLSSAVSSGMLKKLVRSAGPQFHheETLTGFKWIGNRAKSLTergfkVVFGYEEALGYMYPLISFDKDG 428
                  59***********6654232..22554479******************9876669***********9998444566**************8889**** PP

                  HHHHHHHHHHHH...H CS
  PGM_PMM_III  86 ilaallvleila...e 98 
                  + aa l +e+ +   +
   KKY21627.1 429 LAAATLYMEAQKhwkR 444
                  ********99874433 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   3.7e-10   1.7e-06      38      68 ..     543     574 ..     537     581 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 3.7e-10
                 EE.EEEETTCCEEEEEEEES.SHHHHHHHHHH CS
  PGM_PMM_IV  38 rlavRpSGTepllrvyvEak.sdeelarlaee 68 
                 ++++R SGTep+l++y+Ea+ s +++a+l++ 
  KKY21627.1 543 TFTLRGSGTEPKLKLYLEASsSAKQIADLQAV 574
                 6789************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.38s 00:00:01.08 Elapsed: 00:00:00.57
# Mc/sec: 3236.29
//
Query:       KKY21628.1  [L=527]
Description: putative dna primase small subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-61  205.4   0.1    1.1e-60  204.7   0.1    1.4  1  DNA_primase_S  DNA primase small subunit


Domain annotation for each model (and alignments):
>> DNA_primase_S  DNA primase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.7   0.1   6.3e-65   1.1e-60       1     176 [.     192     422 ..     192     423 .. 0.99

  Alignments for each domain:
  == domain 1  score: 204.7 bits;  conditional E-value: 6.3e-65
                    EEEEEETTT-.....TT--HHHHHHHHHHHHHHHHHHHH-----GGGEEEEE--SEEEEEEE--TTEEES-HHHHHHHHHH............... CS
  DNA_primase_S   1 FDiDmddydd....cseatvcekcwkfvsvavkvldellredfgfkdilwvfsgrrGfHcwvsdkdarpltdeeraaivnylnly........... 81 
                    FDiD++dydd    c++a++c+kcw fv+ a+kv+d++lr+dfgf++i+wv+sgrrG+H+w+sdk ar+l+d +r+ai+ y++++           
     KKY21628.1 192 FDIDLTDYDDirtcCDKANICNKCWTFVTMAIKVVDTALRDDFGFEHIMWVYSGRRGAHAWISDKSARELDDDKRKAIAGYFEVLkggaqggkrvn 287
                    9*******************************************************************************999999********** PP

                    ....................................HCHHHHCT--------............................................ CS
  DNA_primase_S  82 ..rplhpflsrsmlkivkpvveeiileeqdpf....eikkllrllpdkslre..kkkw.................................eaked 136
                      rplhp+l+rs l+i+k ++ + il +q pf    + ++ll+llpd++l    +kkw                                   k+d
     KKY21628.1 288 lkRPLHPHLTRS-LDILKSYFQTSILVDQEPFlstaGAERLLSLLPDAALVTalRKKWssspdrasakkwadidalastgvsknldttalmQTKQD 382
                    ************.*****************************************9999999999999999*********************99*** PP

                    .........-----------------....---------. CS
  DNA_primase_S 137 ivlvllyprldeqvtkgikhllkapfcihgktgnvcvpld 176
                    i l+++yprld++v+k+++hllk+pf +h++tg+vcvp++
     KKY21628.1 383 ILLEYTYPRLDVEVSKKRIHLLKSPFVVHPGTGRVCVPIT 422
                    **************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.36s 00:00:01.03 Elapsed: 00:00:00.51
# Mc/sec: 3136.83
//
Query:       KKY21629.1  [L=433]
Description: putative membrane anchor opy2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-11   42.2  22.3    1.1e-10   41.6  22.3    1.3  1  Opy2      Opy2 protein
  ------ inclusion threshold ------
      0.036   14.0   0.1      0.083   12.8   0.1    1.5  1  Syndecan  Syndecan domain
       0.14   12.6   0.1       0.32   11.5   0.1    1.5  1  DUF2231   Predicted membrane protein (DUF2231)
       0.42    9.4  11.6        1.1    8.1  11.6    1.6  1  VSP       Giardia variant-specific surface protein


Domain annotation for each model (and alignments):
>> Opy2  Opy2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6  22.3   2.6e-14   1.1e-10       1      35 []      12      46 ..      12      46 .. 1.00

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 2.6e-14
        Opy2  1 CVsCpdsapsCPsCpsgeeCvltaqtCtsCaktyC 35
                CV+Cp+++psCPsC+s+e+C+l+a +C+sCa+t+C
  KKY21629.1 12 CVQCPSETPSCPSCASDETCTLIASSCDSCASTIC 46
                *********************************** PP

>> Syndecan  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.9e-05     0.083      10      34 ..      62      86 ..      55      91 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.9e-05
    Syndecan 10 aaviggvvvgllfaillvlflvYRm 34
                a+ i+g+v+g +f+i l +flv+R 
  KKY21629.1 62 AGAIAGAVIGGVFVIALAVFLVWRF 86
                899********************96 PP

>> DUF2231  Predicted membrane protein (DUF2231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   7.1e-05      0.32      44      75 ..      69     100 ..      53     103 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.1e-05
     DUF2231  44 avggvlllalivaltvWrfvlrlreee.qvspl 75 
                 ++ggv+++al+v+  vWrf++r r+++  ++p+
  KKY21629.1  69 VIGGVFVIALAVF-LVWRFFIRDRRKQwDAQPW 100
                 589********99.8*******99988788887 PP

>> VSP  Giardia variant-specific surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  11.6   0.00024       1.1     316     395 ..      18      90 ..       9      92 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00024
         VSP 316 kevactssesdkgvtGvkdclscappssdkGsvlcylikdsgstnksGlstGaiaGisvavvvvvgGlvGflcwwficrG 395
                 ++ +c s+ sd++ t        a   ++  s +c  + +s +  k    +GaiaG  +  v v++ l  fl w f+ r 
  KKY21629.1  18 ETPSCPSCASDETCT------LIASSCDSCASTICSKVSESSTEHKKSAPAGAIAGAVIGGVFVIA-LAVFLVWRFFIRD 90 
                 456788888886555......5555555556889999999998899999*******9999998886.788*****99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       950  (0.0529868); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.52
# Mc/sec: 2499.31
//
Query:       KKY21630.1  [L=907]
Description: putative chitin synthase g [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-69  230.8   0.0    1.1e-68  230.3   0.0    1.2  1  Chitin_synth_1   Chitin synthase
    1.1e-27   95.8   0.0    3.1e-27   94.3   0.0    1.8  2  Chitin_synth_1N  Chitin synthase N-terminal
    3.7e-24   85.2   5.4    3.2e-20   72.3   0.0    2.4  3  Chitin_synth_2   Chitin synthase
    1.1e-10   41.7   0.1    1.1e-10   41.7   0.1    2.6  3  Glyco_trans_2_3  Glycosyl transferase family group 2


Domain annotation for each model (and alignments):
>> Chitin_synth_1  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.3   0.0   2.5e-72   1.1e-68       1     163 []     257     425 ..     257     425 .. 0.93

  Alignments for each domain:
  == domain 1  score: 230.3 bits;  conditional E-value: 2.5e-72
  Chitin_synth_1   1 mynEdkellarTLkgvmkNieelkkrkkskvwgkds..WkkivVcivsDGrekideetldvlaalgvyqegvakkkvngkevkahlfeyttqlsv 93 
                     +ynEdk+l arTL+gvm+Ni+e+++ k+s++w+k +  W+kivVc+v+DG++++d++tld+la++g+yq+g++kk+++g+e++ah+feyttqlsv
      KKY21630.1 257 YYNEDKVLTARTLHGVMQNIREIVNLKHSEFWHKGGpaWQKIVVCLVFDGIDPADKNTLDLLATIGIYQDGIMKKDIDGEETVAHIFEYTTQLSV 351
                     7*******************************987777********************************************************* PP

  Chitin_synth_1  94 de...elklkene.kslvpvqllfclkeknakkinShrWlfnafarllqPevcvlldvGtkpgkkslyklwkaf 163
                     ++    ++ ++n+ ++l p+q++fclk+kn+kkinShrWlf af+r+l+Pevc+lld+Gtkp+++sl++lw+af
      KKY21630.1 352 TPtlqLIRPQDNSsSTLPPIQMMFCLKQKNSKKINSHRWLFTAFGRILNPEVCILLDAGTKPSPRSLLYLWEAF 425
                     8855433334443378899*****************************************************98 PP

>> Chitin_synth_1N  Chitin synthase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.0     7e-31   3.1e-27       1      73 []     177     256 ..     177     256 .. 0.87
   2 ?   -2.7   0.0       1.3   5.9e+03      32      47 ..     482     497 ..     459     506 .. 0.71

  Alignments for each domain:
  == domain 1  score: 94.3 bits;  conditional E-value: 7e-31
  Chitin_synth_1N   1 tkkvkLl.ngnlvldlpvpkkllkalp...eeeke....seEfthmRYtAvTcdPddft.kegytLRqalygReteLlIviT 73 
                      t+kvkL  ++ + +d+pvp+++++a++   ++  +    seEfthmRYtA+TcdP++f+ k+gy+LR+a+y+R+teLlI+iT
       KKY21630.1 177 TRKVKLAdDQVFSVDYPVPSAIKNAIEkkyRD--DleagSEEFTHMRYTAATCDPSEFNlKNGYNLRPAMYNRHTELLIAIT 256
                      689***95555677*************66422..24456******************************************9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.3
  Chitin_synth_1N  32 seEfthmRYtAvTcdP 47 
                         f+  RY A+   P
       KKY21630.1 482 PGAFSAYRYRAILGRP 497
                      5668999**9997666 PP

>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0   7.1e-24   3.2e-20     203     385 ..     402     591 ..     392     640 .. 0.78
   2 ?   -4.8   1.6       1.6   7.2e+03     452     479 ..     685     711 ..     660     718 .. 0.52
   3 !   15.4   0.2   1.2e-06    0.0054     424     495 ..     738     808 ..     731     831 .. 0.79

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 7.1e-24
  Chitin_synth_2 203 eivlmvdadtkvapdsltrlvaalvkdpeilglcGetkiankkesw......vtaiqvfeyyishhlskafesvfGsvtclPGcfslyrikaakg 291
                     e+++++da tk  p sl  l  a+ +d+++ g cGe +     + w      + a q fey is  l k +es fG v+ lPG fs+yr +a  g
      KKY21630.1 402 EVCILLDAGTKPSPRSLLYLWEAFYNDKNLGGACGEIHAM-LGKGWsklinpLVAAQNFEYKISNILDKPLESSFGYVSVLPGAFSAYRYRAILG 495
                     8999********************************8744.3333411122245679***********************************988 PP

  Chitin_synth_2 292 adgkwvPilvspeiveeysenvvdtl..hkknllllGedrylt.tlllktfpkrktvfvpqakcktvaPdtfkvllsqrrrwinstv.hnllelv 382
                          +    ++ + ++  ++ ++ +   kkn+ +l edr l   l+ k  +k + ++v+ ak +t +P+    ++ qrrrw+n +    +  l+
      KKY21630.1 496 -RPLDQYFHGDHTLAKKLGKKGIEGMniFKKNM-FLAEDRILCfELVAKAGSKWHLTYVKAAKGETDVPEGAAEFIGQRRRWLNGSFaASIYSLI 588
                     .33234445677788889999888652268886.689****98469999***********************************65312333444 PP

  Chitin_synth_2 383 lvr 385
                       +
      KKY21630.1 589 HFT 591
                     433 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 1.6
  Chitin_synth_2 452 tarkleyvawllvyllalPifnfvlPly 479
                     +  k++y+  ++v+ l   ++  +l ly
      KKY21630.1 685 KGSKWSYILSMCVFGLV-QLYVIILALY 711
                     34566666666666332.2333333333 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 1.2e-06
  Chitin_synth_2 424 ilksklvpviplvllaivlGlpailivltarkleyvawllvyllalPifnfvlPlyafwhlddfswGetrvv 495
                     +++s+    + ++ la  +Gl  +   l    +++ + +l y+l  P f  vl +yaf +  d swG     
      KKY21630.1 738 FFASTGAG-VIIIALASTFGLYYVASFLYMDPWHMFTSFLQYMLLAPSFINVLMIYAFSNWHDVSWGTKGSD 808
                     55533333.457788999*************************************************76554 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.1   2.5e-14   1.1e-10       3     189 ..     405     635 ..     403     641 .. 0.71
   2 ?   -2.7   2.4         1   4.6e+03     168     193 ..     679     714 ..     649     719 .. 0.47
   3 ?   -3.8   3.3       2.2     1e+04     164     190 ..     763     790 ..     733     797 .. 0.52

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 2.5e-14
  Glyco_trans_2_3   3 lllDaDtvlppdclreiaaela.spevaivqgpvlvm...nvanwleelaalf...faedhgkdilvrealgrvvpsvGsgaflrrsalq.... 85 
                      +llDa t ++p +l+++ + +  + + + ++g + +m   ++++++  l a+    ++++ + d +  +++g v  ++G+ ++ r +a+     
       KKY21630.1 405 ILLDAGTKPSPRSLLYLWEAFYnDKNLGGACGEIHAMlgkGWSKLINPLVAAQnfeYKISNILDKPLESSFGYVSVLPGAFSAYRYRAILgrpl 498
                      79***************88666489***********987766655544444444449*********************************9999 PP

  Glyco_trans_2_3  86 ............evg........gwdgdessvsEDfdmglrl.qrkG..yrvrfvpeslvkekspltlraalrQrkRwayGc...eleklillv 153
                                  ++g         ++ ++ +++ED  +++ l +++G  +++ +v ++   + +p     ++ Qr+Rw+ G    +++ li  +
       KKY21630.1 499 dqyfhgdhtlakKLGkkgiegmnIFK-KNMFLAEDRILCFELvAKAGskWHLTYVKAAKGETDVPEGAAEFIGQRRRWLNGSfaaSIYSLIHFT 591
                      98888888777744477666666555.467************44666777888999999**********************8765333334344 PP

  Glyco_trans_2_3 154 rllgylgsllwsalp.......lhlallllfsllalalvl.lll 189
                      r ++  ++l+ + ++          ++l +fsl++++l++ +l+
       KKY21630.1 592 RMYKSSHNLIRMFFFhfqtlynTVSVILSWFSLSSFWLTTtVLM 635
                      44444444443333311111111112333333333444431333 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1
  Glyco_trans_2_3 168 p.........lhlall.llfsllalalvllllllla 193
                                ++++l+  +f+l+ l++++l+l+l++
       KKY21630.1 679 AlgnrpkgskWSYILSmCVFGLVQLYVIILALYLVY 714
                      133344444444433303333333333333333332 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 2.2
  Glyco_trans_2_3 164 wsal.plhlallllfsllalalvlllll 190
                      + ++ p+h++ ++l+++l    ++++l+
       KKY21630.1 763 FLYMdPWHMFTSFLQYMLLAPSFINVLM 790
                      1222247777777777655333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (907 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.49
# Mc/sec: 5574.08
//
Query:       KKY21631.1  [L=554]
Description: putative amino acid permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-90  304.3  44.5    4.4e-89  299.3  44.5    2.0  1  AA_permease    Amino acid permease
    5.9e-25   88.0  43.6    7.7e-24   84.3  43.6    1.9  1  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
       0.86    9.4   0.0       0.86    9.4   0.0    3.2  4  Synaptobrevin  Synaptobrevin


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.3  44.5   7.3e-93   4.4e-89       2     473 ..      47     498 ..      46     501 .. 0.94

  Alignments for each domain:
  == domain 1  score: 299.3 bits;  conditional E-value: 7.3e-93
  AA_permease   2 vlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasi 99 
                  ++++ +gg iGt+lfv +g  l +aGp++++la+++  +++++  ++++e++t++p sgg   +as+ ++++lGf+ G+n++++++t ++ e+ a++ 
   KKY21631.1  47 MQLMIIGGSIGTALFVTIGAGLMSAGPGSLFLAFVIYSIFLACCNNCMAEMSTYMPISGGWIRMASHWVDDALGFALGWNFFLYEATLIPYEISALNL 144
                  7899********************************************************************************************** PP

  AA_permease 100 liqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivg..iillaggkpnkga.gfrflgdngsifknnlppgfakee 194
                  +i+fw   + +p     +a+  + +++  + +v ++        li     ++f+++g  +++++gg+p+++a gfr+++ +g+ f+++++ g    +
   KKY21631.1 145 VITFW--SDNIP----PAAICCACIVAYGTHNVNLE--------LI-----LIFLVFGftFVTMVGGNPQHDAyGFRYWKTPGA-FAEYITTG----S 218
                  *****..99999....55444455444444444433........44.....44555555577799*******************.77777777....8 PP

  AA_permease 195 egafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.........aspfvifikes 283
                   g+f +f+s++  ++f + G e+ a++a+E+k P+k+++ka++ + +r ++f+++++l++g+++p+nd +l++ ++s+         asp+vi++++ 
   KKY21631.1 219 LGRFEGFLSGLWRAAFVIVGPEYCAMLAAEAKYPRKTLKKAFKTMYFRFALFFIGGALAVGIVIPYNDATLVA-INSGeadgsgtgaASPYVIAMQNM 315
                  99**********************************************************************9.77779******************* PP

  AA_permease 284 gvsvlaplinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwl 381
                  g+ vl+++ na++ t+++s++ns++y+asR+lysla dg+aPkvl+k++k+gvP+   +++mi+ +l+ll+ ++n++  +v  +l ++++++++i ++
   KKY21631.1 316 GIGVLPHITNALLMTSIFSAGNSYVYCASRTLYSLALDGHAPKVLRKLTKSGVPIYCFAITMIFPFLSLLILGSNAS--QVVLWLANLTTAAQIIDFI 411
                  *****************************************************************************..******************* PP

  AA_permease 382 liilsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknk 473
                   ++l y+ f +a+++q+ s + l++k  ++p+ ++ +l+++i+++  ++++++l+     +++++++f+  yl+v++ +++++g+k+++k+k
   KKY21631.1 412 GMCLVYIFFHRAMQAQNFSRDTLPYKGYFQPYSAWAGLIFMIFVVCCYGYAIFLP-----GSFSVGDFFIYYLMVFVCIVLYLGWKFIKKTK 498
                  *******************************************************.....99***************************987 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3  43.6   1.3e-27   7.7e-24       1     423 [.      42     484 ..      42     487 .. 0.75

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 1.3e-27
  AA_permease_2   1 lsllsafalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlas 94 
                    ls+++  +++ig  ig++ fv+   ++ s+gp +++  +++  i++ ++  ++aE+s+ +p sgG +  +++     ++f  +w n+f y ++l  
     KKY21631.1  42 LSWRQMQLMIIGGSIGTALFVTIgaGLMSAGPGSLFLAFVIYSIFLACCNNCMAEMSTYMPISGGWIRMASHWVDDALGFALGW-NFFLYEATLIP 136
                    79*******************987755568887666666666666689*****************9999998888877777777.67889999989 PP

  AA_permease_2  95 ilsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl..stetdt..ffpn. 185
                    + ++a++  +++++ ++ +   +++++a         i ++g+ +  ++  il+ l++ +++++++       +g+ ++++     ++t   f++ 
     KKY21631.1 137 YEISALNLVITFWSDNIPP---AAICCA--------CIVAYGT-HNVNLELILIFLVFGFTFVTMV-------GGNPQHDAygFRYWKTpgAFAEy 213
                    9999999999999866644...334433........3334444.3446667777777764543333.......45555555564445544422222 PP

  AA_permease_2 186 gwpgv.......llgllivlwsfdGfesaanvseevkk..kdvpkai..........figllivlvlyllvniaflgvvpddeianlsn.lgsvaa 261
                    + +g+       l+gl  ++++++G e++a  + e+k   k+++ka           fig+++++++ + +n a l +++ +e + +++   s++ 
     KKY21631.1 214 ITTGSlgrfegfLSGLWRAAFVIVGPEYCAMLAAEAKYprKTLKKAFktmyfrfalfFIGGALAVGIVIPYNDATLVAINSGEADGSGTgAASPYV 309
                    333322232333778888*****************9866568888888889999999999999999999999999999999999766554677899 PP

  AA_permease_2 262 lffeavggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas.saaynfllsvssl 356
                    + ++++g +v+ +i ++l++ s++ a+n++v+ +sr+l++la dg  P++++k  k g pi++  +t+i+  +l+ll+l+++ s  + +l+++++ 
     KKY21631.1 310 IAMQNMGIGVLPHITNALLMTSIFSAGNSYVYCASRTLYSLALDGHAPKVLRKLTKSGVPIYCFAITMIFP-FLSLLILGSNaSQVVLWLANLTTA 404
                    **********************************************************************9.6778888888899999******** PP

  AA_permease_2 357 glii.syllliigalilrkkrphl.kr...pgk........ilvaiigalfllfllvalffppkgpatqssliytiiltv 423
                    + ii ++++++++ +++r  + +   r   p+k        +   i+++++++   +a+f+p+  ++  + ++y++++++
     KKY21631.1 405 AQIIdFIGMCLVYIFFHRAMQAQNfSRdtlPYKgyfqpysaWAGLIFMIFVVCCYGYAIFLPGSFSVGDFFIYYLMVFVC 484
                    *999677788********98886655567844444553333433334444444444787877666556555666555444 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00014      0.86      56      83 ..      37      64 ..      23      69 .. 0.92
   2 ?   -2.6   0.2      0.79   4.7e+03      64      84 ..     169     189 ..     167     190 .. 0.75
   3 ?   -2.0   0.0      0.54   3.2e+03      69      79 ..     446     456 ..     423     465 .. 0.50
   4 ?   -3.3   0.6       1.4   8.4e+03      80      88 ..     476     484 ..     473     493 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00014
                   HHHHHHHHHTXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin 56 klkrkmwwknmkliiililvvlililii 83
                   +l rk  w++m+l+ii + + ++l++ i
     KKY21631.1 37 HLSRKLSWRQMQLMIIGGSIGTALFVTI 64
                   689******************9999877 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.79
                    HTXXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin  64 knmkliiililvvlililiii 84 
                    +n+ l +ili++v+ + ++ +
     KKY21631.1 169 HNVNLELILIFLVFGFTFVTM 189
                    678888888888888877765 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.54
                    XXXXXXXXXXX CS
  Synaptobrevin  69 iiililvvlil 79 
                    ++ li++++++
     KKY21631.1 446 WAGLIFMIFVV 456
                    33333333333 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 1.4
                    XXXXXXXXX CS
  Synaptobrevin  80 iliiiivic 88 
                    i+++++++c
     KKY21631.1 476 IYYLMVFVC 484
                    333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 3670.11
//
Query:       KKY21632.1  [L=315]
Description: putative phytanoyldioxygenase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-17   64.3   0.0    2.6e-17   63.8   0.0    1.2  1  PhyH      Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0   1.5e-21   2.6e-17       3     209 ..      26     230 ..      24     232 .. 0.79

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 1.5e-21
                 HHSEEEETTSS-HHHHHHHHHHHHHHHHHCHTTCCSEEEEECEEESTTCCCEE.CCCHHCHHHHTTHHHHHHHHHHHHTSCEEEE.......EEEEEEE CS
        PhyH   3 edGylviegflsaeevealraeiealldralesgdkidfffeekaaadedgll.eksinkvghflhprkvadlvrailgqdvyva.......avlqsmy 93 
                 edG+++i++f ++e v++++ae++ +      ++dk +  +    +++++  l  +s + ++ +l  + v++l + +l +++ ++        + ++ +
  KKY21632.1  26 EDGAVIIQNFTTPELVDQVNAETRPY-----LDSDKPWKGALFPPETRRCPRLvSRSKTVREQWLISPVVNELTEFFLAKTTSNYygaekhtYTTHPII 119
                 79***********************8.....44444444444444444444555688899999988879999999999999998899988775567777 PP

                 EE.EEE-TTTCB-EEEEE-SGGGSTEES.....GCCEEE..........EEEESS-B-TTBT-EEEETTGGGS-CCGTCCHHCSGCCTTSCCCTTTGHG CS
        PhyH  94 qd.ifkqpkiGgevqpwHqDstflptdp.....eesvvg..........vwialedateenGclrfiPGSHkweegplrrrlpeddteaeddeakkede 176
                 +   + + ++G ++q++H+D+  +++d+     +    g          + i   d t enG+++++P SH+w+ +         +++++         
  KKY21632.1 120 NIsLTIETRPGSAAQRLHRDDKNFHVDHydqtkT----GyrvgsdvgmaFLIPGVDTTIENGATQVLPKSHLWGME---------RWPKT--------- 196
                 669999999****************777534442....2334466667799999*******************444.........33444......... PP

                 SCEEEE.BTTTEEEEEETTSEEEE-TB.SSS.XE CS
        PhyH 177 eeavpvevkaGdavlfhgrllHgsgaNrsdk.sR 209
                 ++   +++k+G+a  + g ++H++gaN++ + +R
  KKY21632.1 197 DNLAYATMKKGEAYCMLGGTYHAGGANTTLDqTR 230
                 6688899**********************87555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 2070.14
//
Query:       KKY21633.1  [L=1011]
Description: putative ketol-acid reductoisomerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-63  213.9   0.0    7.5e-63  212.7   0.0    1.6  2  PALP           Pyridoxal-phosphate dependent enzyme
    4.1e-46  156.6   0.0      1e-45  155.3   0.0    1.7  1  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind
    1.8e-39  135.3   0.0      5e-39  133.9   0.0    1.8  1  IlvC           Acetohydroxy acid isomeroreductase, catalytic 
    2.3e-36  124.5   0.0    6.9e-36  123.0   0.0    1.8  2  UQ_con         Ubiquitin-conjugating enzyme
     0.0086   16.6   0.0       0.41   11.3   0.0    2.7  2  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
      0.072   13.3   0.0        1.2    9.3   0.0    2.4  2  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.4   4.1e+03     184     217 ..     408     454 ..     393     469 .. 0.63
   2 !  212.7   0.0   2.5e-66   7.5e-63       2     294 .]     641     974 ..     640     974 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.4
                 T.-EEEEEEECTTCGGTTCC.S..S.SS..B............SSS. CS
        PALP 184 d.vrvigvepegsdalarsl.ragrrvtvpvs...........dtia 217
                 + + vi v p+gs    rsl r+gr  + + +           + ia
  KKY21633.1 408 KdIDVILVAPKGSGRTVRSLfREGRGINSSIAvfqdvtgqakeKAIA 454
                 34778888888777777776566655555544555555555444444 PP

  == domain 2  score: 212.7 bits;  conditional E-value: 2.5e-66
                 GGCSSS--EEEECCTC.........CCCCCE.....EEEEEGGGSTTSBTTHHHHHHHHHHHHTT.....TTTSEEEEEBSSHHHHHHHHHHHHHT-EE CS
        PALP   2 tlgigpTPlvrlprls.........kelgvp.....lflKlEslnptgSfKdRgaeyllarlkeg.....tgaktvveassGNhgralAaaaallGlkv 81 
                 +++i +TPl+++++l+             +      +f+K+E+ + +g+fK+Rga ++++rl e       ++++vv+ ssGNh++alA+aa+ + +++
  KKY21633.1 641 EPHIHRTPLLTSKALNkiasqpqiaG---GVspklnIFFKCENQQRIGAFKARGAHHAILRLVESvgieeVRRRGVVTHSSGNHAQALALAASTFSIPA 736
                 78999999999999997777775441...2245566*************************7777778778**************************** PP

                 EEEEETTS-HHHHHHHHHTT-EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTT...............TTEEEEEEE- CS
        PALP  82 tivvpadaspekvallrllGaevvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlg...............gkpdavvvpv 165
                 +iv+p+ ++p+k+a +r +  +v+++g++  e++a+++e+++e ++a+lv+++d+p++i+g+gt+glEi +q+                  ++a++ p+
  KKY21633.1 737 YIVMPSISTPSKIAGTRDYTEHVIFSGSTSVEREAKVEEVIKE-TDAILVPPYDHPDIILGQGTTGLEIQQQYRevvstdpqrsahpsrAHLNALISPC 834
                 *******************************************.*************************7666666666666666666666666***** PP

                 SSSHHHHHHHHHHHH...HSTT..-EEEEEEEC..TTCGGTTCCS..S.SS..B...SSS.CCSTCSCGTTCCHHHH..SEEEEEEEEEEHHHHHHHHH CS
        PALP 166 GgGgliaGiaaglke...rrpd..vrvigvepe..gsdalarslragrrvtvpvs..dtiadglavgspselafell..drlvdeivtvsdeealeamr 253
                 GgGgl++G+a+ + +      +  + ++g+ep+  g+d   ++l+a+ ++++++    tiadgl+++  +e +++++  +++v  +++v+++e+ +am+
  KKY21633.1 835 GGGGLLSGLATSFSSppsP--EekTLIFGAEPSfsGADDARQGLAANPPKRITHVssLTIADGLRTP-LGEITWSVIsdKKKVEGVYSVTEDEIKKAMK 930
                 ***************9543..45599******************9999999998888**********.*********7777777*************** PP

                 HHHHHHSB-B-HHHHHHHHHH...HHHHHHCCTTCEEEEEEE-B CS
        PALP 254 llarregivvepssaaalaal...klreagelkegdrvvviltg 294
                 l+ +r +++veps+ +++a++   +  ++   +eg +v v+ltg
  KKY21633.1 931 LVLERLKVWVEPSAVVGFAVIlfcEEWRKLVPEEGWDVAVVLTG 974
                 *********************98844444445555588888887 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.3   0.0   3.4e-49     1e-45       2     161 ..     296     461 ..     295     463 .. 0.93

  Alignments for each domain:
  == domain 1  score: 155.3 bits;  conditional E-value: 3.4e-49
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-....EEEEHHHHHHT-SEEEE-S-HHHHHHHHHHHTGGG--TT-EEEESSS CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegf....evltvaeavkkadvvmiliPDelqkevyeeeiepnlkegkalafahG 96 
                 +k+ ++a+iGyGsqGh q+lnlrd+gl+v++g+r++++s+k+A+++g+    +  +v+ea++k  ++m+l+ D +q+e +  +i+p+l++gk+l f+hG
  KKY21633.1 296 FKNDTLALIGYGSQGHGQGLNLRDNGLNVIIGVRKNGASWKEAQADGWvpgkNLFEVDEAISKGTIIMNLLSDAAQSETW-PAIKPQLTKGKTLYFSHG 393
                 57899*****************************************9733335689************************.99**************** PP

                 HHHHTT...SS---TTSEEEEEEESS-SHHHHHHHHTT----EEEEEEE-SSS-HHHHHHHHHHHTTH CS
        IlvN  97 fnihfg...likppkdvdvvlvAPkgpGhlvreeyeegkGvpaliaveqdasgkakelalayakgiGa 161
                 f+ +f+   ++++pkd+dv+lvAPkg G++vr+ ++eg+G+ + iav qd++g+ake+a+a+  ++G+
  KKY21633.1 394 FSPVFKdltKVDVPKDIDVILVAPKGSGRTVRSLFREGRGINSSIAVFQDVTGQAKEKAIALGVAVGS 461
                 **99973335789**************************************************99997 PP

>> IlvC  Acetohydroxy acid isomeroreductase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   1.7e-42     5e-39       1     143 [.     469     613 ..     469     614 .. 0.94

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 1.7e-42
                 HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT--HHHHHHHHTHHH.HHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHS-HHHHHHHHHHHHH CS
        IlvC   1 FkeEtetDlfgEqavLcGgvselveagFetlveaGyspelAyfeclhel.klivdliyegGiakmresiSdtaeygdltagprviteevkeemkeilee 98 
                 F++E+++Dl+gE+++L+Gg+++++ a++e+l+e+G+sp++A++e+++e+ +++++li  +G+++m+ ++S+ta++g+l++++++ +++ k+++++++++
  KKY21633.1 469 FEKEVYSDLYGERGCLMGGIHGMFLAQYEVLRERGHSPSEAFNETVEEAtQSLYPLIGGNGMDWMYAACSTTARRGALDWQDKF-KSALKPVFNDLYDS 566
                 99**********************************************99**********************************.************** PP

                 HHTTHHHHHHHHHHHT..TSHHHHHHHHHHHTSHHHHHHHHHHHCHT CS
        IlvC  99 iqsGefakevieenka..grpelkklrkeeaeheiekvgkklralmp 143
                 +++G+++k+ +e n++   r++++k ++e ++ ei+++gk +r+l+p
  KKY21633.1 567 VKDGSETKRSLEYNSQsdYRERYEKEMQEIRDLEIWRAGKAVRSLRP 613
                 ************9544446777788888888*************997 PP

>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.0   0.0   2.3e-39   6.9e-36      18     138 ..      65     183 ..      52     185 .. 0.92
   2 ?   -3.2   0.0         2   6.1e+03      58      78 ..     627     647 ..     624     657 .. 0.83

  Alignments for each domain:
  == domain 1  score: 123.0 bits;  conditional E-value: 2.3e-39
                 EEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT--TTSHHHHHHHHHHHHHHS--TTS- CS
      UQ_con  18 saklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeekWspaltlesvllsiqsLlaepnpesp 116
                 +++  d +++ +++++i++ ++++Y+gg F +++++++++P++pPkvk+++ki+HPn+d +G+vcl+iL+e+ W+p+l+l+ v++ +q L+ epn ++p
  KKY21633.1  65 KTSFPDPDDILNFTLTIEP-DEGMYKGGSFVFTFTINQNFPHEPPKVKCTQKIYHPNIDLEGNVCLNILRED-WKPVLNLNAVIVGMQFLFLEPNASDP 161
                 444555579********99.**************************************************55.************************** PP

                 SSHHHHHHHHHTHHHHHHHHHH CS
      UQ_con 117 lnkeaakllkkdreeykkkvke 138
                 lnkeaa++l+++re +k+++++
  KKY21633.1 162 LNKEAADDLRTNREGFKRNART 183
                 ******************9976 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2
                 TTS--EEEESST-SCTTBETT CS
      UQ_con  58 PlkpPkvkfvtkifHPnvdks 78 
                 Pl++ +v f +k++ P+++++
  KKY21633.1 627 PLNAESVGFAHKLIEPHIHRT 647
                 889999***********9976 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00014      0.41       2      89 ..     301     386 ..     300     388 .. 0.72
   2 ?    2.3   0.0     0.088   2.6e+02       7      78 ..     718     794 ..     714     800 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC....-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHTTS CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg....vkvtavdneeaaeeadvvvlavkpedveevlselakdalkgk 89 
                    +++iG+G++g++  ++l  +g    +++++ ++n  + +e++ + g     +++  +  ea+++ +++   +  ++ +e++ ++++++ kgk
     KKY21633.1 301 LALIGYGSQGHGQGLNLRDNG---LNVIIGVRKNGASWKEAQ-ADGwvpgKNLF--EVDEAISKGTIIMNLLSDAAQSETWPAIKPQLTKGK 386
                    79*******************...****99555555555554.44456434444..478888888888777777777777777777777766 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.088
                    TSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC.........-EEECECHHHHHHH-SEEEE-S-HHHHHHHH CS
  F420_oxidored   7 aGnmgealasgllaagaqpheivvansrnpekaeelaeelg.........vkvtavdneeaaeeadvvvlavkpedveevl 78 
                    +Gn ++ala+ +++   +++ ++  + ++p+k++ +++  +         v+ +a + ee+++e+d ++  v+p+d+++++
     KKY21633.1 718 SGNHAQALALAASTFSIPAYIVM-PSISTPSKIAGTRDYTEhvifsgstsVEREA-KVEEVIKETDAIL--VPPYDHPDII 794
                    58889999887777765666665.6688889998888888788888887666666.8899999999987..6888888775 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00039       1.2       2      86 ..     301     388 ..     300     393 .. 0.79
   2 ?    0.9   0.0      0.15   4.4e+02      61     101 ..     765     809 ..     751     815 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00039
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSH.HHHHHHHHTTEEE-SSHHHHHHHC..SEEEE-SSSHHHHHHHHHSHCCC--TT-EE CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtk.ekveelvaegakaaesieelvasl..dvvitmvkagkavdeviegllealkkgdil 86 
                    +++iG G  G+   lnl ++g +v++  r++ ++ +e+ a+g ++ +++ e+ +++   ++i+ + +++a  e++  ++++l kg++l
     KKY21633.1 301 LALIGYGSQGHGQGLNLRDNGLNVIIGVRKNgASWKEAQADGWVPGKNLFEVDEAIskGTIIMNLLSDAAQSETWPAIKPQLTKGKTL 388
                    79**********************9988776267788888886666666665555555667777777788889999999999999875 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.15
                    E-SSSHHHHHHHHHS....HCCC--TT-EEEE-S---HHHHHHHH CS
  NAD_binding_2  61 tmvkagkavdevieg....llealkkgdilidgstsspedtrela 101
                    t v+ +++v+evi++    l++ ++  di++  +t+  e +++  
     KKY21633.1 765 TSVEREAKVEEVIKEtdaiLVPPYDHPDIILGQGTTGLEIQQQYR 809
                    689999*********9**99999*******999999888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1011 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.87u 0.35s 00:00:01.22 Elapsed: 00:00:00.55
# Mc/sec: 5496.59
//
Query:       KKY21634.1  [L=2013]
Description: putative dna-directed rna polymerase iii [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-80  270.0   0.2    2.8e-80  270.0   0.2    2.1  2  RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
    1.1e-77  261.0   0.7    2.2e-77  260.1   0.7    1.5  1  RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
    1.9e-72  245.3  31.2    4.9e-72  243.9  31.2    1.7  1  Drc1-Sld2       DNA replication and checkpoint protein
    7.4e-70  234.5   0.0    2.1e-69  233.0   0.0    1.9  1  RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
    8.9e-37  126.4   0.0    1.8e-36  125.5   0.0    1.6  1  RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
      6e-29  100.2   0.1    3.6e-28   97.7   0.1    2.5  1  RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.0   0.2   9.3e-84   2.8e-80       2     312 .]      22     368 ..      21     368 .. 0.96
   2 ?   -2.3   0.7      0.72   2.2e+03     134     169 ..    1873    1915 ..    1839    2000 .. 0.64

  Alignments for each domain:
  == domain 1  score: 270.0 bits;  conditional E-value: 9.3e-84
                     E---EEEEEE--HHHHHHH-SBB--STTSTC.STSSSSBBSSSSSSSSS-SSSSSTSTTTSSTTTT-----EEEEEECEEE-HHHHHHHHHHCTT CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1   2 kkikeiqfgiaspeeirkwSvvevtkaetie.ekslkPeegGllDerlgtidkdleCetCgkkkkeCeghfGhieLakPvfhigffklilkilec 95 
                     k ik+++fg++s+++i + S v+v+ +++++ ++ + ++ +G lD r+g + k+ +C+tC++  + C+ghfGh++L  Pvfh+g+fk+ ++il++
      KKY21634.1  22 KVIKALEFGVLSNQDIINQSLVQVSDRNLFDlDRGRASQANGPLDARMGISGKSERCATCNELLQVCNGHFGHVKLCLPVFHVGYFKKAIQILQS 116
                     679****************************8888999********************************************************* PP

                     CETTTTEBSS-TTSH....HHHHHHCSSSCC..CCHHHHHHHHCCS-BE-SSSSB-EEE.................................... CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxx.................................... RF
  RNA_pol_Rpb1_1  96 vckecskllldeekkkllsklkkrekleelk..krlkaieelckkinlcekCgavqpkl.................................... 152
                     vck csk+ll+e++++ + ++ +r++l++l+  + +k++++ ckk ++c +Cga+++ +                                    
      KKY21634.1 117 VCKDCSKILLTENDRRKFLRDLRRPHLDNLRklQIAKRVSDQCKKNKTCFDCGAINGVVrkagtnalkishdkfrafnsstaknkvappskiifd 211
                     ******************************98889*******************88888888888888999999999999999999999999999 PP

                     ..EEETTEEEEEESSSSTSCEEEE-HHHHHHHHHCSTHHHHHHTTSBTTTB-GGGCCECCEEE--GGGS-BEESSSSSEEBECCCCHHHHHHHHH CS
                     ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 153 ..eeegeklkaalkkskeeekeklsaekvkkllkriededvevlgfkssgsrPewliltvlPVpPpeiRPsvqldggrrsedDlteklrdiikrN 245
                        +e +k++++++k+ +++ ++l++ +v+k++++i+++d+e+lg+ +   rPe +++  +P pP++iRPsv  +  + +edD+t kl di+ +N
      KKY21634.1 212 esFHEARKMNNEIEKHIKKAVDDLNPLRVLKIFRQISQSDCELLGLGN--MRPETFLWLQVPAPPVCIRPSVGQEA-ASTEDDITAKLGDIVSAN 303
                     988889999999999999999*************************99..9**********************999.99**************** PP

                     HHHHHHHHSSSSSTCHHHHHHHHHHHHHHCC-TTSSSSSEEBSTTSSS--THHHHHTSSSSCCCCCT CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 246 nrLkkaeeegapeliieeekelLQehvatlfdneisglkpatqkskrplkslsqrLkGKeGrfRgnL 312
                      +L++a+++gap + i e+++ L +++a++++++++g   a+ + ++p++++ qrLkGK+GrfRgnL
      KKY21634.1 304 VHLREALRKGAPVSSIVEHWDYLSLQIAMYINSDVPG--LAKGEGSKPMRGFVQRLKGKQGRFRGNL 368
                     *************************************..677************************9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.72
                      HHHCCS-BE-SSSSB-EEEEEETTEEEEEESSSST.......S CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......x RF
  RNA_pol_Rpb1_1  134 elckkinlcekCgavqpkleeegeklkaalkkske.......e 169 
                      + +++i++ e+C++++ + + +g++ +  +kk+ +       +
      KKY21634.1 1873 DALNEIEAAEHCDVSEDSQNIDGQEPQRIWKKRGQkrttkrvN 1915
                      4455556666777777777677777776666666533333330 PP

>> RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.1   0.7   7.3e-81   2.2e-77       1     265 [.     858    1503 ..     858    1505 .. 0.95

  Alignments for each domain:
  == domain 1  score: 260.1 bits;  conditional E-value: 7.3e-81
                      B--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEETTSEEEETTS-EEESSGGGTS........................... CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................... RF
  RNA_pol_Rpb1_5    1 GLkvkefffhtmggReGLiDtAvkTaesGYlqRrlvkaledvvvkyddtvrnsggeivqflygedg........................... 66  
                      GL++ ef+fh mggR GL+DtAvkTae+GY++Rrl+k+led+  +yd+tvrns+ +ivqf +g+d+                           
      KKY21634.1  858 GLTPYEFIFHGMGGRIGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDETVRNSSSNIVQFQFGDDKldpvdmeadaqpvnfkrtythvesttf 950 
                      9******************************************************************************************** PP

                      ............................................................................................. CS
                      ............................................................................................. RF
  RNA_pol_Rpb1_5   67 ............................................................................................. 66  
                                                                                                                   
      KKY21634.1  951 nmddeglspdeirrvtkemlasqrakterkdllgkqslpydlivaagqetdtqrkpgekrkvwpelaegqhkmvdnheslrdfihdmeefiea 1043
                      ********************************************************************************************* PP

                      ............................................................................................. CS
                      ............................................................................................. RF
  RNA_pol_Rpb1_5   67 ............................................................................................. 66  
                                                                                                                   
      KKY21634.1 1044 kardleqarkekhslahppaypvpqaeaaqpvsgpkstargrgkrskgeapelaskrrklttteesttvlsvratagpstkdrfeltskisev 1136
                      ********************************************************************************************* PP

                      ................B--TT-BHHHHHHHHHHHHHHCCCSSTTSSTCSSTSSSSSSHHHHHHHHTT-SS-SS-EEEEEB-SSSS..SCHHHC CS
                      ................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx RF
  RNA_pol_Rpb1_5   67 ................lvepGeavGiiaaQSiGePgTQltlnTFHfaGvasknvtlGvprlkeilnvskniksksltvllvdeea..keleka 141 
                                       vepG avG++ aQSiGePgTQ+tl+TFHfaGva ++ t+Gvpr+kei+n+sk+i+++ +t+ l+++++  +  + a
      KKY21634.1 1137 tlrgfiqscfekyykaQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSLTQGVPRIKEIINASKEISTPVITCVLHKNAVigTTEDYA 1229
                      *****************************************************************************9999887521444455 PP

                      HHHHHHHSE.................................................................................... CS
                      xxxxxxxxx.................................................................................... RF
  RNA_pol_Rpb1_5  142 kkvkkaiek.................................................................................... 150 
                      + vk++ie                                                                                     
      KKY21634.1 1230 RVVKGRIEGlflgdiaesieidwrptlpgtitinlsaatkqrlfleisrkqivnaikkhrrfkgasitfslvgrngvrisldtsetkkstiki 1322
                      677777777************************************************************************************ PP

                      ..................................................................CBTTEEEEEEE..EEEEEEEET..... CS
                      ..................................................................xxxxxxxxxxx..xxxxxxxxx..... RF
  RNA_pol_Rpb1_5  151 ..................................................................gikkikrilvk..eaekgkeee..... 170 
                                                                                        ++k+ k +     +a+     +     
      KKY21634.1 1323 eeeyiqdtylrlqhlkrlvsgiqvlghptvgrvivhaeeiknepaapketadvpikakgqessaapEVKNEKLAEAPgvKAK-----Qdrtae 1410
                      *******************************************************999999997773333333322211222.....122344 PP

                      .EEEEEEECS--HHHHTTSTTTBETTTEEESSHHHHHHHHCHHHHHHHHHHHHHHHHHHTTS---HHHHHHHHHHHTTTSS---SSTTCHCCS CS
                      .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5  171 .kelvletegvnlsevlkveevvdageilsndiaeileilgieaarkallkeiqevykvqgvsvndrHlelivdqmtkkgeivavnrsGinka 262 
                       k+++l +eg  l+  l++e+ v+++++++n+i e++++lgieaar+++++e+q+v++   +s++ rH++l++d+mt kge++ ++r G+ k+
      KKY21634.1 1411 aKTMKLLVEGYGLRYCLNIEG-VNKTKTTTNSIMETCQVLGIEAARAKIVTELQSVMSD--LSIDPRHMALLADVMTYKGEVLGITRFGLAKM 1500
                      599******************.**********************************986..778**************************998 PP

                      SSH CS
                      xxx RF
  RNA_pol_Rpb1_5  263 els 265 
                        s
      KKY21634.1 1501 RDS 1503
                      765 PP

>> Drc1-Sld2  DNA replication and checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.9  31.2   1.6e-75   4.9e-72      10     449 ..    1552    2012 ..    1552    2013 .] 0.74

  Alignments for each domain:
  == domain 1  score: 243.9 bits;  conditional E-value: 1.6e-75
   Drc1-Sld2   10 eWEraFaakn.grkpsreDIKkn.peIaakYkeYskLkake....sqskkdkkpsksvkleerpkkrkhesteepkeeqkn.nststprkskkaiaa 99  
                  eWE++Fa +n grkpsreDIK +   I + YkeY++L+++     + ++ + k s++++le+r     + +   +kee  +  +++t++ +k++i  
  KKY21634.1 1552 EWEKSFAIANtGRKPSREDIKRDdSGIGQVYKEYNRLRDIVegkpVTAQGKGKRSEAQELEQRR----SLKRRRDKEESGAqRTRETTSLQKDHIVS 1644
                  7********************86157*************9844443333333333333333333....33333333333443788888888888*** PP

   Drc1-Sld2  100 TPsk.shpsevdpydsPsvlrrlfsPstkaalGPTPQrdGkvLgLFDllsespksspskskerkaslsgsav......qtpskrr..aldinae.ed 186 
                  TP k +h  + ++  s ++ r l     k+ +GPTPQrdGkvLgLFDlls+ + s+ ++++ rk++++  a       qtps++r    di +  ++
  KKY21634.1 1645 TPHKiKHLPQRNESPSSETPRPL-----KSFIGPTPQRDGKVLGLFDLLSTGG-SKDTPTTGRKRKAEVLAEgngnivQTPSRKRgvGGDIHEHlDE 1735
                  ****9888888877777776666.....999******************6655.555555544444444444445555*******766788777533 PP

   Drc1-Sld2  187 .............rtpassgkklllsslfatpttlr.......eaesakn..kkdkeasknsssskl..........eseTPsflrrknsarlptvd 251 
                               rtpas+gkk+lls++fatp+t r       e++   +   k++ +++  + +++            +TP flrr++ ++++++ 
  KKY21634.1 1736 ehtpntgrrqkfqRTPASEGKKFLLSQFFATPSTARfmdqepeEQQ---SlvGKTPLRTRLLAGRDGanmdmpehpgADSTPPFLRRTT-SSFSQKL 1828
                  89*******************************9999987664222...133445666665555555566667777789**********.7777777 PP

   Drc1-Sld2  252 easefdlspspl.rkpqrlvg..kglsaivqelrdieeeklddeldllremEaeeeqaelddvedsqaseaeegrvrkkkgqkrttRrvkmkPvt.. 343 
                   as+ +  ps +   + ++++  ++ls+iv++lr++++e+ dd++d+l+e+Ea +e  ++++ ++++++ +e +r +kk+gqkrtt+rv+mkP    
  KKY21634.1 1829 VAST-SAEPSSFpPSQLSFFKkgRSLSEIVKSLRQVQDEEHDDDMDALNEIEA-AEHCDVSE-DSQNIDGQEPQRIWKKRGQKRTTKRVNMKPPKvk 1922
                  7777.7888888445556666999****************************9.56777776.66666999*********************98889 PP

   Drc1-Sld2  344 .eeeeededekknsedeldklpetqrkaeklddelseredseededsdsdeeseseptakaksfkekakkkkkakkkkvkkvstNyrrLKirnkgak 439 
                   + ++++++++++s+del+ ++e+         ++       +  d+++ e  + +pt+++k     + ++k ++ k  + + +N+r+LKi+nk++k
  KKY21634.1 1923 pKAKDSTDQQQDESDDELASVNEET--------QM------PSAPDESELERPTGNPTKQSK----TMSENKTRSVKANAISHMNFRSLKIKNKNTK 2001
                  88888899999999*******9992........34......111233333334444444443....455655777777888888**********776 PP

   Drc1-Sld2  440 gra..kgRfrrR 449 
                  ++    gR  +R
  KKY21634.1 2002 AKGrgFGRS-GR 2012
                  665547777.44 PP

>> RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.0   0.0   7.1e-73   2.1e-69       1     166 []     370     537 ..     370     537 .. 0.98

  Alignments for each domain:
  == domain 1  score: 233.0 bits;  conditional E-value: 7.1e-73
                     SEEESSEEEEEEEEESSS-TTEEEEEHHHHTTSEEEEE-STTTHHHHHHHHHHTTTSSSSEEEE.ESTTSSEEETTTT-S.CHHCCTTTTSEEEE CS
  RNA_pol_Rpb1_2   1 GkrvdysaRsvispdpnlkldevgvPisvakkltvpeivtelnikklrklvengpevyPgasyv.kredgsekklkakkr.klakelekgdiver 93 
                     Gkrvd+s+R+vispdpnl+++ev+vPi vak++t+pe+v+++n++kl++ v+ng +++Pga+yv k  ++ +  l++ +   +a++l++gdiver
      KKY21634.1 370 GKRVDFSGRTVISPDPNLAINEVAVPILVAKNMTYPERVSRYNKAKLQERVRNGTKKWPGANYVfKAGSDFRLFLRYGNPdVVADQLQEGDIVER 464
                     9***************************************************************88899999*****998669************ PP

                     E--TTSEEEEE-SSTTSGGGEEEEEEEEESSSSEEEEGGGHCCCT--SSS-EEEEE--SSHHHHHHHHHCSBT CS
  RNA_pol_Rpb1_2  94 hvkdgdvvllNRqPsLhklsimahrvkvlekktlrlnlsvttayNaDFDGDemnlhlpqseearaEaeelllv 166
                     h++dgd+vl+NRqPsLhklsi +h vkv +++t+rln++v+++yNaDFDGDemnlh+pq+eear+Ea +l+ v
      KKY21634.1 465 HLEDGDIVLFNRQPSLHKLSILSHFVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAMQLMGV 537
                     **********************************************************************975 PP

>> RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.5   0.0     6e-40   1.8e-36       1     157 []     540     720 ..     540     720 .. 0.95

  Alignments for each domain:
  == domain 1  score: 125.5 bits;  conditional E-value: 6e-40
                     CSEETTTTEESSS--THHHHHHHHHSSTTEEEEHHHHHHHHHHSSSCCSSSSSSSSSBESSSEBEEHHHHHHCCCHC......CCCEEEE.SSSS CS
  RNA_pol_Rpb1_3   1 nilspqsgkPvigivQDsllGvyllTkedvfidreeaqqllykgvgsdsktvtlrpailkpkelwtgkqtfsrilpn......einyerk.neek 88 
                     ni++p++g+P+i  +QD+++++ l++  d f+dr+++++++  + ++d++ +++ pai+kp+ lwtgkq+f +++ +      ++n++ + +  +
      KKY21634.1 540 NIVTPKNGEPIISAIQDFITASWLMSSLDRFYDRKTFINICIGMLENDTPFQLPDPAIIKPQTLWTGKQVFNVLMSPnkksgvHVNIDAEcR--D 632
                     9************************************************************99***********988899999777777553..2 PP

                     ...................STSEEECSSEEEES--SHHHHSSSSTTSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCEB-TGGGG CS
  RNA_pol_Rpb1_3  89 ...................dgkvlikngelikGvidkkvvgkksqgslihvlakeygiketvrfldslqrlgfkyllqsgftigigDt 157
                                        d++  i+n+e+i+G++dk++vg+ +++sl+++l+++yg++++v+ +++l+r+  ++l  +gf+igi+D+
      KKY21634.1 633 ykplpktdgktpdapefawDSYLCIRNSEIICGRMDKATVGSGKKNSLFYILYRDYGPDAAVKGMNRLSRMSARWLCEQGFSIGISDV 720
                     3477788899999**************************************************************************6 PP

>> RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.1   1.2e-31   3.6e-28       3     108 .]     747     851 ..     745     851 .. 0.96

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 1.2e-31
                     HHCTHTCCHHHTTHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSHHHHHHHCTSSS-HHHHHHHHTB-EEEEBTTBSS--SSTSCSSTTSSS CS
  RNA_pol_Rpb1_4   3 eaerygkledlpgksleelfeakinkilnkardkagkiaskslaasNsiliMvksGaKGsiinisqiagclGqqnvegkripkgfsgrtlphfkk 97 
                     e+e  g+l+++pg++  e++e++ +k+l+++r + +k   k l ++N  l+M++sG+KGs++n++q+a++lGqq +egkr+++gf++rtlphf k
      KKY21634.1 747 EYEA-GRLKRAPGQNEAETLESQQSKLLSEVRTELSKHLTKGLTKHNTPLVMAQSGSKGSNVNVAQMAALLGQQDIEGKRVQDGFQDRTLPHFAK 840
                     5666.99***********************************9967************************************************* PP

                     SESSTTTSSEE CS
  RNA_pol_Rpb1_4  98 idespesrGFv 108
                     +  +p s+GFv
      KKY21634.1 841 HARTPASKGFV 851
                     **********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2013 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1264  (0.0705003); expected 358.6 (0.02)
Passed bias filter:                      648  (0.0361426); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.28u 0.34s 00:00:01.62 Elapsed: 00:00:00.55
# Mc/sec: 10969.33
//
Query:       KKY21635.1  [L=645]
Description: putative gtp-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-50  172.0   0.0    1.7e-50  171.2   0.0    1.4  1  GTP_EFTU      Elongation factor Tu GTP binding domain
    2.5e-41  140.2   3.4    4.6e-41  139.3   3.4    1.5  1  LepA_C        GTP-binding protein LepA C-terminus
      1e-20   73.6   0.0    2.1e-20   72.5   0.0    1.6  1  EFG_C         Elongation factor G C-terminus
    8.8e-06   26.0   0.6    3.6e-05   24.0   0.1    2.2  2  GTP_EFTU_D2   Elongation factor Tu domain 2
    2.3e-05   24.5   0.1    7.7e-05   22.7   0.0    2.0  2  MMR_HSR1      50S ribosome-binding GTPase
    3.6e-05   23.4   0.0    0.00013   21.6   0.0    1.9  2  Ras           Ras family
    0.00081   19.4   0.0     0.0027   17.8   0.0    2.0  1  EFG_II        Elongation Factor G, domain II
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.049   13.4   0.0    2.1  2  RF3_C         Class II release factor RF3, C-terminal domain
      0.018   14.5   0.0      0.051   13.0   0.0    1.8  1  SRPRB         Signal recognition particle receptor beta subun
      0.039   14.0   0.0      0.091   12.8   0.0    1.6  1  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
       0.08   13.2   0.0       0.57   10.4   0.0    2.3  2  Roc           Ras of Complex, Roc, domain of DAPkinase
       0.16   12.1   2.6       0.39   11.0   2.6    1.6  1  Snurportin1   Snurportin1


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.2   0.0   1.2e-53   1.7e-50       2     193 ..      48     224 ..      47     225 .. 0.94

  Alignments for each domain:
  == domain 1  score: 171.2 bits;  conditional E-value: 1.2e-53
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE..TTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEE CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle..ketkkylinliDtPGHvdFskevirglrvlDgav 98 
                 r rn++i++hvDhGK+TL+drLl+ tg+i+  ++k+    vlD+l+ ErergiT+k++++s+   +++++yl++l+DtPGHvdF  ev+r+++ + ga+
  KKY21635.1  48 RFRNFCIVAHVDHGKSTLSDRLLELTGTIKPGQNKQ----VLDKLDVERERGITVKAQTCSMIynHKGDDYLLHLVDTPGHVDFRAEVSRSYASCGGAL 142
                 78*****************************55544....6********************99766********************************* PP

                 EEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU  99 lvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealvellp 193
                 l+vda++Gv++qt  +++la ++g++++ +iNK+D + a+  +  e++++++          + +     + v++Sa++g +v++ll ++++ +p
  KKY21635.1 143 LLVDASQGVQAQTVANFYLAFAQGLKLVPVINKVDLPTADPARALEQMEDSF----------ELD---PSTAVHVSAKTGLNVESLLPTVIDQIP 224
                 ****************************************************..........223...4579*******************9988 PP

>> LepA_C  GTP-binding protein LepA C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.3   3.4   3.1e-44   4.6e-41       1     106 [.     538     643 ..     538     644 .. 0.99

  Alignments for each domain:
  == domain 1  score: 139.3 bits;  conditional E-value: 3.1e-44
                 ESSCB-GGG-EEEETTTHHHHHHHHHHHHHHHS---SS-EEEEEEETTEEEEEEEE----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      LepA_C   1 ingekvdaLslivhrskaeergrklvekLkeliprqlfevaiqaaigskviaretikalrkdvlaklyggditrkkKllekqkegkkrlkkignveipq 99 
                 +n+ +vda+s +vh+s+++  g+++vek+ke+++rq+fev+iqaa g+ ++aret+k++rkdvl+kl+++ditr+kKllekqkeg+k+lk++gnv+i++
  KKY21635.1 538 VNKIPVDAVSRVVHTSQTRYLGKQWVEKFKEHVDRQMFEVVIQAAAGNLIVARETLKPFRKDVLQKLHASDITRRKKLLEKQKEGRKKLKAVGNVTIDH 636
                 7999*********************************************************************************************** PP

                 XXXXXXX CS
      LepA_C 100 eaflavl 106
                 +af+a+l
  KKY21635.1 637 KAFQAFL 643
                 *****98 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   1.4e-23   2.1e-20       2      86 ..     449     534 ..     448     537 .. 0.95

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 1.4e-23
                 EEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-T.THHHCHHHCTTTS-EEEEEEEEEEE--HHHH CS
       EFG_C   2 llEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeli.gfateLrslTkGegsfsmefsgYeevpgdkl 86 
                 l EP+v+++i+ peey+gk+i++++s rGe+ + e  +s++vi+++e+Pla+l+ +f+ +L+++TkG++s+++e s+++ ++ +kl
  KKY21635.1 449 LREPYVTATITFPEEYLGKIIELCESNRGEQSSLEFFTSTQVILKYELPLAQLVdDFFGKLKAATKGYASLDYEESDWRVSNVVKL 534
                 78****************************************************************************99877665 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.8   2.6e+03      10      26 ..      73      90 ..      72     111 .. 0.74
   2 !   24.0   0.1   2.4e-08   3.6e-05       1      73 [.     248     319 ..     248     320 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.8
                 ESEEETTEEEEEEC.TCT CS
  GTP_EFTU_D2 10 sGtlkkGdevrilg.ndt 26
                 +Gt+k+G++  +l  +d+
   KKY21635.1 73 TGTIKPGQNKQVLDkLDV 90
                 69*****98777555554 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 2.4e-08
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEE..EEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGv..ivaikgledaiivGdtl 73 
                  G++ l+r+++G++k+Gd ++     t+ + iv++++ ++ ++  ++ ++ag+++++  + ++k + +a +vGdt 
   KKY21635.1 248 GVILLVRIFEGQVKPGDHLVS--FATGLRYIVGEVGIMYPNQTSQTVLRAGQVGYIyfNPGMKRIQEA-KVGDTY 319
                  8899*****************..***8888*********************99766115689999998.***995 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   5.2e-08   7.7e-05       3     113 ..      53     174 ..      51     175 .. 0.68
   2 ?   -2.3   0.1       3.2   4.7e+03      66     101 ..     562     604 ..     544     618 .. 0.65

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 5.2e-08
                 EEEESTTSSHHHHHHHHHT..............STEEESSSTTSSSSEEEEEEE....ETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltg..............ekaivsdkpgtTrdinegrvk....lkgkeielvDtpGliegaseekglgkaflaleeadlillvv 83 
                 +iv +   GKStL  +l++              +k  v+++ g T + ++  +      ++  ++lvDtpG ++    + ++++++++   +  +ll+v
  KKY21635.1  53 CIVAHVDHGKSTLSDRLLEltgtikpgqnkqvlDKLDVERERGITVKAQTCSMIynhkGDDYLLHLVDTPGHVD---FRAEVSRSYAS---CGGALLLV 145
                 67888899*********96666777777665544889***********9998874432223559*******665...33467777774...99****** PP

                 ETTTTCSHHHHHHHHHHHHH..TTSEEEEEEE CS
    MMR_HSR1  84 daseeklkpldeeleellee..akkplilvln 113
                 das++ +++  ++++++     ++ +l+ v+n
  KKY21635.1 146 DASQG-VQA--QTVANFYLAfaQGLKLVPVIN 174
                 *9944.533..344444322234445555555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.2
                 HHHHHHHHHCTSEEEEEEETT.......TTCSHHHHHHHHHHH CS
    MMR_HSR1  66 lgkaflaleeadlillvvdas.......eeklkpldeeleell 101
                   ++f+++ + +++ +v++a+       +e+lkp ++++ + l
  KKY21635.1 562 WVEKFKEHVDRQMFEVVIQAAagnlivaRETLKPFRKDVLQKL 604
                 5566777776666666666555555555455666666666665 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0     9e-08   0.00013      30     160 ..      96     223 ..      85     225 .. 0.84
   2 ?   -1.9   0.0       1.5   2.2e+03     107     141 ..     534     569 ..     523     582 .. 0.59

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 9e-08
                 TTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGG-SS-HHHHH CS
         Ras  30 sTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekravsteege 128
                  T+ ++  +   + +g ++ l++ DT G  +f++  + +y ++ g+ll+ d ++    ++v++++  + +     +++v v nKvDl +    ++ e  
  KKY21635.1  96 ITVKAQTCSMIYNHKGDDYLLHLVDTPGHVDFRAEVSRSYASCGGALLLVDASQGVQAQTVANFYLAFAQG----LKLVPVINKVDLPTADPARALEQM 190
                 57766667777778899***************************************999999999877655....5578889******98877776665 PP

                 HHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras 129 elakelg.lkfletSAktnenveeafeellrei 160
                 e + el+  + + +SAkt  nve ++ +++++i
  KKY21635.1 191 EDSFELDpSTAVHVSAKTGLNVESLLPTVIDQI 223
                 555666668999*************99999887 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.5
                 EEEEEETTTGGG.G-SS-HHHHHHHHHHHTSEEEEE CS
         Ras 107 ivLvGnKvDlee.kravsteegeelakelglkflet 141
                 + L+ nK+ ++  +r+v+t++ + l k++  kf e 
  KKY21635.1 534 LQLLVNKIPVDAvSRVVHTSQTRYLGKQWVEKFKEH 569
                 555566655554456666666666666655555543 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.8e-06    0.0027       2      73 ..     337     411 ..     336     413 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.8e-06
      EFG_II   2 PePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsG.....mGelHleivverlkreykvevel 73 
                 P+ ++++a  p +++d + l++++++l+  D +++++  +e+ e + +G     +G+lH  +  +rl++e+++++ +
  KKY21635.1 337 PKAMVFVAAFPVDQGDFQHLEDSINQLCLNDRSVTIQ--KESSEALGAGfrlgfLGTLHCSVFEDRLRQEHGASIII 411
                 899*****************************97765..6788877665333338****************998866 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.3e-05     0.049      12      84 ..     342     417 ..     329     451 .. 0.72
   2 ?   -2.4   0.0       2.6   3.9e+03       7      27 ..     596     616 ..     591     632 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.3e-05
                 EEEEEESSGGGHHHHHHHHHHHHHCT...SSEEEEET.TSS-EEEEESSTHHHHHHHHHHHHHH---EEEEE-S-- CS
       RF3_C  12 farvrlkdplkrkqlrkgleqLaeEG...avqvfkeeeageelilgaVGqLQfeVveeRlknEYgvevrleslpys 84 
                 f      d+   ++l+  ++qL       ++q  ++e+ g  + lg +G+L   V+e+Rl++E+g+++ +++  + 
  KKY21635.1 342 FVAAFPVDQGDFQHLEDSINQLCLNDrsvTIQKESSEALGAGFRLGFLGTLHCSVFEDRLRQEHGASIIITPPTVP 417
                 5666667888889999999999755411134444444555789************************999875544 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.6
                 E--SEEEEEEESSGGGHHHHH CS
       RF3_C   7 FaPElfarvrlkdplkrkqlr 27 
                 F  +++++++++d ++rk+l 
  KKY21635.1 596 FRKDVLQKLHASDITRRKKLL 616
                 778889999999999999874 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.4e-05     0.051      22      99 ..      87     160 ..      48     183 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.4e-05
                 HHHHS.S---B---SS-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHH CS
       SRPRB  22 rLttd.svkktvtSqessaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEll 99 
                 +L  + +   tv +q  s+ ++  + ++  l+l+D PGh+ +r +++ +    +s  g + +vD++    ++++vA ++
  KKY21635.1  87 KLDVErERGITVKAQTCSMIYNH-KGDDYLLHLVDTPGHVDFRAEVSRS---YASCGGALLLVDASQ-GVQAQTVANFY 160
                 33333344456666666666666.5567789**************9988...566677777778664.34456666665 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.1e-05     0.091      58     102 ..     169     221 ..     164     224 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.1e-05
  MMR_HSR1_Xtn  58 clyvlNKiDlisleeldelare........pnsvviSaekelnldeLkekiwe 102
                    + v+NK+Dl + +  ++l+++        + +v +Sa+++ln+++L+ ++ +
    KKY21635.1 169 LVPVINKVDLPTADPARALEQMedsfeldpSTAVHVSAKTGLNVESLLPTVID 221
                   5679******8888888888766678888558899************987766 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00038      0.57      10     119 ..      60     177 ..      52     178 .. 0.59
   2 ?   -1.0   0.0       1.3   1.9e+03      89     114 ..     553     578 ..     544     582 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00038
                 SSHHHHHHCHCT..-CCC-EEETTT..........TEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHH CS
         Roc  10 vGKtsllkrfve..dkfsekeksti..........gvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlk 96 
                  GK++l +r++e  +++++ +++ +          g++++ +++   + +  ++k +++ l++ Dt G+ +fr+  +  + +   a+l++d+++  +++
  KKY21635.1  60 HGKSTLSDRLLEltGTIKPGQNKQVldkldvererGITVKAQTC---SMI-YNHKGDDYLLHLVDTPGHVDFRAEVSRSYASCGGALLLVDASQGVQAQ 154
                 57777777776533444444444332211111111344433333...233.34567899**************96666666667777777776666666 PP

                 HHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  97 eWlkelkkvagkspvilvgnkiD 119
                 +  +   + a+  +++ v+nk+D
  KKY21635.1 155 TVANFYLAFAQGLKLVPVINKVD 177
                 66666667777777777888887 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.3
                 GHHHHCHHHHHHHHHHHCSSS-EEEE CS
         Roc  89 srssenlkeWlkelkkvagkspvilv 114
                 s++    k+W++++k++++++++ +v
  KKY21635.1 553 SQTRYLGKQWVEKFKEHVDRQMFEVV 578
                 333344489*******9988765444 PP

>> Snurportin1  Snurportin1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.6   0.00026      0.39      18      33 ..     610     625 ..     602     627 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00026
  Snurportin1  18 eRRrrlLerqKekRld 33 
                  +RR++lLe+qKe R +
   KKY21635.1 610 TRRKKLLEKQKEGRKK 625
                  7*************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.50
# Mc/sec: 3882.42
//
Query:       KKY21636.1  [L=222]
Description: putative mitotic spindle checkpoint component mad2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-32  112.1   0.1    3.1e-32  111.9   0.1    1.0  1  HORMA     HORMA domain
  ------ inclusion threshold ------
       0.16   11.8   0.5       0.41   10.5   0.1    1.9  2  Csm1_B    Csm1 subunit domain B


Domain annotation for each model (and alignments):
>> HORMA  HORMA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.1   3.5e-36   3.1e-32       1     212 []      19     210 ..      19     210 .. 0.85

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 3.5e-36
       HORMA   1 SlelvkellaasissilylRglfpedaFedrklsglklkiLlrgsseeadrlldwLekGvfdaLe....kkyLealiltIykdkdepenvlEsYtFsfk 95 
                 S +lv e++++si++il++Rg++p+++F+ +k+  + l++L+ ++    d+++++++k ++++L+     +++++l+++I++++  +  ++E+++F+++
  KKY21636.1  19 SSKLVAEFFEYSINTILFQRGVYPAEDFSAVKK--YGLNMLVSSD----DQVKAYIKK-IMSQLNrwmvGGKISKLVVVITSKETGE--HIERWQFDVQ 108
                 889*****************************9..9*****8888....9******99.*****999999***********555553..9********* PP

       HORMA  96 ytksggkedvssskletkkknleslsldekeeekkktekevkkelealirrlitltqsLpplpekryltmkLlytdd....tPedyePpgFkaaaeeed 190
                 ++++ ++ ++ss+k +t+++     +ld  +   +k+eke+++e++a++r++++++++Lp+l+   ++t+++l+++d    +P ++       ++    
  KKY21636.1 109 IFSKSKS-RSSSRKPATENAA---PELD--QIPTEKSEKEIQEEIQAIFRQITASVTFLPVLD--GNCTFNVLVYADadseVPVEW-------GD---- 188
                 *995555.4444444333322...2233..6778889*************************9..9***********777778888.......33.... PP

       HORMA 191 strkeneepekvsvGkvdtghh 212
                 s++ke ++ ekv++++++t  h
  KKY21636.1 189 SDAKEIKNGEKVQLRSFSTTSH 210
                 44699*************9987 PP

>> Csm1_B  Csm1 subunit domain B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   4.5e-05      0.41      47      88 ..      54      95 ..       8      99 .. 0.72
   2 ?   -2.8   0.0      0.65   5.8e+03      62      72 ..     141     151 ..     131     159 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.5e-05
                EEEEEE--HHHHHHHHHHHHHHHHHCCCCTSSS-EEEEEEEE CS
      Csm1_B 47 fylLlpntekvkekleeiekelnewllkefkgkLylalayve 88
                + +L++  ++vk+ +++i ++ln+w++    +kL +++ + e
  KKY21636.1 54 LNMLVSSDDQVKAYIKKIMSQLNRWMVGGKISKLVVVITSKE 95
                679***********************9998888888887665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.65
                 HHHHHHHHHHC CS
      Csm1_B  62 eeiekelnewl 72 
                 +ei++e++ ++
  KKY21636.1 141 KEIQEEIQAIF 151
                 34444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       904  (0.0504211); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1595.53
//
Query:       KKY21637.1  [L=260]
Description: putative lea domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1066  (0.0594567); expected 358.6 (0.02)
Passed bias filter:                      668  (0.0372581); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.50
# Mc/sec: 1567.80
//
Query:       KKY21638.1  [L=495]
Description: putative tap domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-24   86.2   0.1    8.3e-23   81.3   0.1    2.1  1  Abhydrolase_1  alpha/beta hydrolase fold
    1.5e-17   63.5   0.0    3.7e-17   62.3   0.0    1.7  2  Abhydrolase_4  TAP-like protein


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.1   9.3e-27   8.3e-23       2     254 ..      19     415 ..      18     417 .. 0.78

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 9.3e-27
                    EEEEE-STTTCGGG.....GTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHH...................................... CS
  Abhydrolase_1   2 vlvilhGlpgssdv.....waerglapaLakdgfdvillDlrGvgySspapacinddy...................................... 54 
                    ++++++G+pg s++      ++   ++ L  d+fd+i++D+rGv ++  + ++  +d                                       
     KKY21638.1  19 SILFNPGGPGASGIglivqGYA--SFRLLFGDDFDLIGFDPRGVNHTMEWVCS--SDVadpsdtlvslnpdviadvislsteqgilcqnqtleqgt 110
                    79********999988866333..68888888*******************99..55555555567777777888899999999999999999999 PP

                    ..SHHHHHHHHHHHHHHCTTSSEE.EEEETHHHHHHHHHHHHHGGGEEEEEEESE........CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHH CS
  Abhydrolase_1  55 ..gtasvaddldrildalgddklt.lvGhSmGGmialayaaeyperVkalvllga........idpaaslieaqrqqaksfpdffdgyaadcarnp 139
                      gta va+d+  i  al+ d    +vG+S+G+++++++aa++p++V++++l+g           + as+ ++ +  +++f d   +y + c   +
     KKY21638.1 111 llGTAFVARDMMEIIKALNEDGMLrYVGYSYGTLLGATFAAMFPDNVDKMILDGNvnppgwyhGLSDASWYQEGDETLAGFFDGCVTYPENCGLEN 206
                    99999*******9988888888888*******************************9988888677778888888888888888888888887544 PP

                    HHH.HHHCCSCHHHHHHHHHHHHHH....................................................................... CS
  Abhydrolase_1 140 agp.lladelaaleqrhrlvdalkf....................................................................... 163
                    a++  ++d l+ ++++ +    l +                                                                       
     KKY21638.1 207 ANTnTGEDLLKDYQTFVQ---QLRNgslqttngagdvlsghdletefyqtlysptgwpdyssqlqvyydnavtqngssnatissrsyrhwkrddta 299
                    443133333333333322...22334466677*************************999988888888888888888888877777777777777 PP

                    ...............................HCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHH CS
  Abhydrolase_1 164 ...............................pdkskrfpssgsdnasslatgalksieqwpttdsaklllrlrelknvlaptlvisgtsDplvppk 228
                                                   +++s ++p  + d  +++  + ++++ ++++ ++++++ +  +      p+l+  g+ Dp++p  
     KKY21638.1 300 dnnvdvqwaiqcgeggytnngatvnsilslsQNYSETAPDFSADALMGNYLECVGWKMRAKEIYNGNFQVETKN------PILFANGRFDPVTPLA 389
                    77777666666666666666666666666666666666666666666666666666666666666666666666......***************7 PP

                    HHHHHHHCHTSEEEEEEETCSSSHHH CS
  Abhydrolase_1 229 aledlaqllpkkrlvvisdagHlafl 254
                       +  +l+ ++r++   ++gH+ + 
     KKY21638.1 390 DAKYASSLFTGSRVLETTGYGHTTLE 415
                    777777899999**********9765 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       1.7   1.5e+04      57      72 ..     223     238 ..     220     242 .. 0.77
   2 !   62.3   0.0   4.2e-21   3.7e-17       7     103 .]     344     441 ..     337     441 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.7
  Abhydrolase_4  57 akalggavlvtvegeG 72 
                     ++l++++l t +g+G
     KKY21638.1 223 VQQLRNGSLQTTNGAG 238
                    6788999988888888 PP

  == domain 2  score: 62.3 bits;  conditional E-value: 4.2e-21
  Abhydrolase_4   7 alaesllsCagwpvspqrprdestakga.apvLllqnerDpaTPyegakklakalggavlvtvegeGHgalaagntCvdkavdaYLltGelpaddt 101
                    al+ + l+C gw+++ ++  + + + ++ +p+L+ +++ Dp+TP++ ak +++ ++g++++  +g GH++l++ +tC+    ++Y+++G+lp+ +t
     KKY21638.1 344 ALMGNYLECVGWKMRAKEIYNGNFQVETkNPILFANGRFDPVTPLADAKYASSLFTGSRVLETTGYGHTTLEQFSTCALAYERNYMRNGTLPDLGT 439
                    44556677**********99999876644******************************************************************* PP

  Abhydrolase_4 102 vC 103
                    vC
     KKY21638.1 440 VC 441
                    *9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3233.75
//
Query:       KKY21675.1  [L=361]
Description: putative family taurine [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-40  139.2   0.2    3.1e-40  138.6   0.2    1.1  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.2   1.8e-44   3.1e-40       4     265 ..      40     336 ..      37     339 .. 0.80

  Alignments for each domain:
  == domain 1  score: 138.6 bits;  conditional E-value: 1.8e-44
        TauD   4 pltpkfgae..gvdlsdleslddel.keelrellaeygvvvfrgfplspeqqlefarrfGplygtpgrgtntkygevld...................v 80 
                 + t+ +g+e  +++ls    l d++  + l   + e+gvv+fr++++  e+q+ + + +G+l+g+p + + +++    +                   +
  KKY21675.1  40 DVTNVIGREypDLQLSGI--LKDDQkLRDLAITVSERGVVFFRNQDIAIEDQKYLGQKLGELTGKPETSKLHRHALSNSkrgiavdengklddevsviS 136
                 677789999999999998..55555577777788**************************555555444444444444455554223333333444443 PP

        TauD  81 ssvyesadianlayttll...................wHtDlsylesppgiqlLhcleapa.tGGetpfvDgraaynaLpeelpellegltavrvyyhy 159
                 s++              +                   wH D +++  p+++ +L  +e p+  GG+t++++g++ay++L++  +++ eglta+++  + 
  KKY21675.1 137 SEQ--------------YrkfyhdrfglnkkklssegWHADITFERIPSDYAILKIIETPEdAGGDTLWASGYEAYDRLSPVWQKFAEGLTATHYQPNF 221
                 333..............23444444455556688999**********************999***********************************99 PP

        TauD 160 rg........gglrteqelpavdkhprtghpvvrthpvltgrkallvn..ppfatrieglgtpeskelldaleelledp.eftyrfqwqeGdlvifdNr 247
                 ++          ++ +  +++   + +++hpvvrt+p  tg+k+l+    +  a  i+g ++ es+ + +++ +l++++ ++++rf+w ++dl+i+dNr
  KKY21675.1 222 NRvakefgeeLIDQDRGAPENTGLDFQASHPVVRTNPI-TGWKSLFGLghQVEAGWIDGITERESEIVKAYFLQLITENhDLQVRFRWNKNDLAIWDNR 319
                 99*****88755566667777888999**********6.*******9964466667799999****************88******************* PP

        TauD 248 rvlHgrt.afdegeeRhll 265
                 +v H++t ++  g +R   
  KKY21675.1 320 SVFHTATnDY-NG-KRQGN 336
                 **********.67.66544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.33s 00:00:00.90 Elapsed: 00:00:00.53
# Mc/sec: 2054.94
//
Query:       KKY21676.1  [L=117]
Description: hypothetical protein UCRPC4_g03442 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.022   14.8   0.0       0.03   14.4   0.0    1.2  1  MACPF     MAC/Perforin domain
       0.15   11.7   0.0       0.18   11.4   0.0    1.1  1  VPS28     VPS28 protein


Domain annotation for each model (and alignments):
>> MACPF  MAC/Perforin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.3e-06      0.03      49      79 ..      50      80 ..      34      85 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.3e-06
                HHHHHHTS-SS--SSTHHH.HHHHHHHH-SE CS
       MACPF 49 FlkalneLpsnydsaaedtpyieffekYGTH 79
                +++  +++  +++s+a+++   ef++kYGTH
  KKY21676.1 50 VINGKKRVYLQVNSQAKTKALKEFIKKYGTH 80
                56778889999999999999*********** PP

>> VPS28  VPS28 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     2e-05      0.18      47      80 ..      62      95 ..      49     114 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2e-05
       VPS28 47 evkkefksleeFvkkykldcpaAlkRlkegvpat 80
                + + ++k l+eF+kky +++++A+  + e++p +
  KKY21676.1 62 NSQAKTKALKEFIKKYGTHANLAVGEIDEDTPEA 95
                45666779***********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.32s 00:00:00.78 Elapsed: 00:00:00.49
# Mc/sec: 724.80
//
Query:       KKY21677.1  [L=550]
Description: putative serine threonine protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-09   36.7   0.0    1.3e-08   35.1   0.0    1.8  1  APH       Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.037   12.9   0.0      0.058   12.2   0.0    1.2  1  DUF1679   Protein of unknown function (DUF1679)


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.5e-12   1.3e-08       3     200 ..      84     352 ..      82     355 .. 0.72

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 1.5e-12
                 EEE--.SSCEEEEEEETT.--EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-.B--B-CTTB.S-EEETTEEEEEEE----EE-SS...HHHHHHHHH CS
         APH   3 relsggasnrtylvttpa.gryvlrrnppa..raaeeirrevallrlLakagv.pvPevlagd.tddeeigllfalieyvpgrsllr...klsaaqlpe 93 
                 +   gg+s  + +++ ++ ++++ +++ p        +++e+a++ +++ +   p P+v+ +d    +  g ++ l+e   g +l     +l +a + +
  KKY21677.1  84 EKMEGGFSK-VLFLQKEDgTELIAKIPCPNagPCTYVTASEAAVMEYVRTHTSvPLPRVYRWDsDPSNPVGAEYILMEKARGVQLFKvwdELEDASRFN 181
                 566788888.66666666479999996666446666778**********88777******988566666777***************999999****** PP

                 HHHHHHHHHCCHHCH.-STTTB-..................................SHHCHTCCHHHHHHCHHH.CCCGCCTCCHHHHHHHH...... CS
         APH  94 llealgeflaalhqvdpaalpla..................................dflaqdlellrqlesata.rllaselldlleeleeq...... 151
                 l  +l+   ++l ++  +a++                                    +    ++++ r+    t  +    el+  + e+e+q      
  KKY21677.1 182 LMIELAKIERQLTSIKFPASGSLyfrksigdeghsvelpreldsgslycvglscdrsW----WPTPSRKSIGHTGpWASLTELGVAITERESQriieqp 276
                 ***************8444444458888888888888888888888888888865551....4444444444444333444444444444444555555 PP

                 ....................HHHHHHHH--S......SS-EEEE-SS-SGGGEEEC...TTEEEEE---TT-EEEE CS
         APH 152 ....................vlaalaallpg......elptvllHgDlhpgNllvd.pddgrvtGviDfedaglgp 200
                                     ++++l + l++       ++++l H Dlh gN+ vd  d+++++ +iD++ + ++p
  KKY21677.1 277 gakydghfsgtreeqlatlkAARQLMEILHSysplarFSQPTLYHTDLHMGNIYVDqGDHTKISSIIDWQHTQIAP 352
                 555555555555554444444555555555566668889******************999**********998887 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.5e-06     0.058     254     303 ..     305     350 ..     264     353 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.5e-06
     DUF1679 254 lekaskvskvlGi.kkvlvhgDlwsaNiLfseeeegklklkkviDyQlvsl 303
                 l+++s    +  + ++ l h Dl   Ni   + +  + k++ +iD+Q  ++
  KKY21677.1 305 LHSYS---PLARFsQPTLYHTDLHMGNIYVDQGD--HTKISSIIDWQHTQI 350
                 33333...344455999***********999955..5999*******8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.54
# Mc/sec: 3067.36
//
Query:       KKY21678.1  [L=409]
Description: putative mgs207 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-77  259.5   0.0    7.2e-77  259.2   0.0    1.0  1  Questin_oxidase  Questin oxidase-like


Domain annotation for each model (and alignments):
>> Questin_oxidase  Questin oxidase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.2   0.0     4e-81   7.2e-77       3     340 .]      50     370 ..      49     370 .. 0.89

  Alignments for each domain:
  == domain 1  score: 259.2 bits;  conditional E-value: 4e-81
  Questin_oxidase   3 NHlpHhll.AlyalGAsaeqlqaaYeenasyqrpaepspekiteenwrdhLgdeeyyrayldFFedelee..kgwkevleeylfsnegaeells 93 
                      NH+ H+ll ++y l +s+e+l++ Y+ +++   p e sp +i +++w+d Lg++ey+rayldFFed+l +  ++w++v++e+l+  +g e+l++
       KKY21678.1  50 NHVNHALLgSAYLLEGSPEHLNDCYDGESKALVPWEDSPGEIAKHDWKDNLGNREYQRAYLDFFEDQLVNhgYDWQAVVDEFLL--GGREPLVN 141
                      9****98669*******************99999999999999**************************889************..99****** PP

  Questin_oxidase  94 rlfggllHPlIhlGyglefgqpalvaegLAqaavhydsdpsellsae.aassraessegsslleilerilkderldaa.arpgnedddkirdgv 185
                       l++ l+HPlIhlGy++e++++++ +e+L +a+v+y++ ++  ++++  +  ++ + ++ss+le ++ri+ d+r+d++ ++pg     + ++ +
       KKY21678.1 142 WLVSDLGHPLIHLGYAYEVSSREICMEALTMASVCYSPMHKYIDNSSyRN--QPTEYTTSSPLEAIARIAGDKRFDKLpSSPG----GNNFSSL 229
                      ************************************66666444433222..23455667****************9944443....2345555 PP

  Questin_oxidase 186 lkr.a.adeileyanawkvseeedkeeleekleeliwaatllyaaaglkkepkkpkyDFflmHlvTsslalrsllallpsklspeskarllray 277
                      ++  + +++ l+++na ++s++      ++ +++++++a++++++   ++   + +yDF+l+Hl+T+s+alr+l++llp+ ++ +    l r++
       KKY21678.1 230 FSDpQlEQAALNHWNALDISTD-----PRSIFQQSQKLAAAILICSRIESGSSQSHYDFYLVHLLTTSHALRILIPLLPPAFHLT----LFRQW 314
                      5555346889*********554.....599***************99999999***************************99999....***** PP

  Questin_oxidase 278 wrlvllvyvargrpeldldsikeyksaseaelkkgndwktviqrsasaikhdDeHviKlvral 340
                      w++++ +y++++rp ++ d++ +y       lk +++w++v + + +  ++ D+H++K +ral
       KKY21678.1 315 WLITVGYYISQLRPIISYDEVLNYD------LK-DRGWDYVQKMGVEGKHSADAHYVKGLRAL 370
                      *********************9955......44.89*******9777889***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 2504.05
//
Query:       KKY21679.1  [L=538]
Description: putative mfs transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-22   79.5  34.6    2.1e-22   79.5  34.6    1.4  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5  34.6   1.2e-26   2.1e-22       6     351 ..     108     484 ..     100     486 .. 0.74
   2 ?   -3.0   0.1      0.15   2.6e+03     247     264 ..     508     522 ..     496     534 .. 0.47

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 1.2e-26
       MFS_1   6 flsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalf 103
                 + + +++++ g+al    +e+ +isp +++ ++++ ++  +v+ l + +ls  +Gr +v++++ +l  +++++++ a+s++   +++r+l Gl++ +++
  KKY21679.1 108 CTADYSAATGGSALI-PQGEEWHISPNTVNHATAGNTFMLGVGGLTVVWLSAWLGRLPVMFWAQVLATATAAWAA-AASSFeSYMAARILNGLFCVSAA 204
                 333333333333333.569****************99999******************99999999998855555.377777***************** PP

       MFS_1 104 pagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll..............peepperkrkspkeee 188
                  +g+ +i d++   e++r i ++s ++ l++ lgp + ++++s+ +Wr  ++++ ++++l++vl +l+               p           ++++
  KKY21679.1 205 GGGLMWIKDIWFYHEHPRKINIWSCAIILSPFLGPQFMAACISASSWRTGMWLCFGITALGLVLTALFGeesfyprhlmpddiP-----------ARKS 292
                 *********99999***********************************************99977777999555555444443...........4443 PP

       MFS_1 189 .................kgtgpaplvpawkallkdpvlwillialllfffgfsg.lltllplylqevlglsglllaglllallalvgailallagrls. 268
                                  ++  +a+++p +  l k pv+  l++ +++f f ++    t++ +++   +++s +l +++++ ++ l++ il+l++g ++ 
  KKY21679.1 293 rllrligveqyrtnwttNSLREAGARP-IFTLAKLPVF--LVCLFYFFDFPWTVaNNTTISVFIIPAYNFS-FLNLAAIYTAPVLGA-ILGLISGHFLf 386
                 455555544444444443333344444.5556666655..6666666655555576666666778999999.333333333333333.33333333333 PP

       MFS_1 269 dr............lgrrrrlllallllllaalglallavtssavllllvlvl.iGf.glgfv..fpsllalasdlappeeagtasglfntagslggal 351
                 d             + ++ rl++ +++l l  lg+ l+++t ++++++++l++ +G+  + ++  +++l a++ d +p e++g  +++ n  ++l+g++
  KKY21679.1 387 DYigqlysrrhsgrIEPEARLIILFPILPLKILGYNLIGTTLTKHWSYWILAFgWGLhNFTTIltTAALGAYLIDAYP-EASGESAAWLNASRTLAGFI 484
                 44444444456666888************************************9776544444669999999999997.******************98 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.15
       MFS_1 247 glllallalvgailalla 264
                    +a++++v+++l+ ++
  KKY21679.1 508 I--MAAAFVVVIVLQ-VW 522
                 2..333333333333.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.49
# Mc/sec: 3323.52
//
Query:       KKY21680.1  [L=575]
Description: putative c6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-18   65.9   0.2    4.7e-18   65.2   0.2    1.2  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.2   2.6e-22   4.7e-18     107     243 ..     169     368 ..     164     388 .. 0.90

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 2.6e-22
  Fungal_trans 107 ssdralherhhgvavrlarslgLhrnpsyvgkks..................................................lwklweeeaesrr 153
                   s+ +al +r++  a++lar+l+L+++++ +++ +                                                    + + e  e+rr
    KKY21680.1 169 SEQKALSMRWWHAAFSLARELRLNQEKKPNSD-NvqsptamkhavpdfdadpffglgnfdfdqglmefmetrseqsdnvrspvqQGVTDLEHNEERR 264
                   55688999********************9995.45*************************************************888888889**** PP

  Fungal_trans 154 RlwwaaFylDktialklGrpp.llddsqinlpLPcddddlwesddaseetlvetk..lsneeksrkiasfllaLkkilsk...........iagsll 236
                   R+ww +++ D+++al+++r + lld+++ +l+LP+d+  +++ ++     +v+ +  +s ++++++++ f+l L+ i ++           ++g+++
    KKY21680.1 265 RTWWLCYIQDRHLALCYNRAVaLLDAECEDLLLPMDEAAWQSGSFLVDPSNVQRPsfPSFQCTGHSFFDFFLPLMTIAGEilnlnhlkndpLLGKFF 361
                   **************************************999999999999998889************************66666666666666666 PP

  Fungal_trans 237 siekqlq 243
                     ++q++
    KKY21680.1 362 HESMQTR 368
                   6666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.49
# Mc/sec: 3507.23
//
Query:       KKY21681.1  [L=502]
Description: putative mfs sugar [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.9e-102  342.9  21.7   3.3e-102  342.7  21.7    1.0  1  Sugar_tr  Sugar (and other) transporter
    1.3e-28   99.9  25.7    1.4e-20   73.6  13.0    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.7  21.7  3.7e-106  3.3e-102       3     452 .]      12     461 ..      10     461 .. 0.93

  Alignments for each domain:
  == domain 1  score: 342.7 bits;  conditional E-value: 3.7e-106
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkns 101
                 ++a++g++l+gYd+gvi+ ++++ +f + f+   +++        +g++vs+f +Ga++G++f+g+ gd++GR+ ++ +++++f+ g++lq  a    +
  KKY21681.1  12 VFASFGSFLYGYDLGVIAEVIASGSFMTTFNSPDATK--------QGVVVSLFTAGAFFGAMFGGPSGDYLGRRVTITFGSIVFMLGGALQTGAR---N 99 
                 789**********************887777776664........48************************************************...9 PP

                 -TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-..TTHHHHHHHCCHHHHHHHHHHGGGS---HHH CS
    Sugar_tr 102 vevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl.nktsn..adgwrillglqlvpallllilllflPESPry 197
                 +  +++gR+++G+gvGl ++++P+y++E+A++++Rg+++ l+q+++ +G l a+++ +g+  ++s+  + +wri+lglq++pa++l +l++++PESPr+
  KKY21681.1 100 LNYIYAGRFFAGVGVGLLTMVIPLYQAELAHPSIRGRITALQQFMLGVGALCASWISYGTyIHFSEtdNAQWRIPLGLQILPAVVLGALIMLFPESPRW 198
                 ************************************************************9999999999***************************** PP

                 HHHTT-HHHHHHHHHHHHHC.....HHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH.. CS
    Sugar_tr 198 lvekgkeeeakevlaklrge.....edadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks.. 289
                 l+ +g+ e+  ++la+l  +     + +  e++++++s+  e e e +s+ el+++k+ ++rl+i+++lq+  q+tG+ +i yysptif ++g+s+   
  KKY21681.1 199 LIDHGRSEKGLAILAQLHANgnqqdPWVLAEFEQIQESITFEHEHEAKSYVELFKNKSAFRRLFIAMALQASIQMTGVSSIQYYSPTIFAQIGISTNdt 297
                 ****************55444243444566666666666666666699999*****99**************************************988 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHH CS
    Sugar_tr 290 llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg..ivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRsk 386
                 l   +i +v   +a    + ++dr+GRR +l++G ++ ++ f+i +   + ++ ++++++a  ++i+++ ++ + f+l+ gp+ w++ +E+f++++Rsk
  KKY21681.1 298 LKYQAINSVFALIAEALCMAFIDRVGRRWTLIVGNLVNCLTFIIATilLAKFPPTSTNDGAHWGFIIMTWVYNFSFSLCCGPLSWIIPAEIFDTHTRSK 396
                 8888888888888888888***************999999999999755566666666***************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 387 alaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 + ++a+++ + +n  i++++pi++  +g +++++ f++++   ++f +  +petk ++lee++ lf
  KKY21681.1 397 GVSLATMTCFAFNTMIGQVTPIAMADVG-YKFYYTFVICNFTNALFFWAVLPETKKVPLEEMNDLF 461
                 ****************************.*********************************9887 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6  13.0   1.6e-24   1.4e-20       2     242 ..      15     297 ..      14     311 .. 0.76
   2 !   31.6   7.2   8.6e-12   7.7e-08      39     179 ..     302     451 ..     289     481 .. 0.78

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 1.6e-24
       MFS_1   2 llaaflsalarsilgpalpl.alaedlgispse..igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqG 96 
                 +++ fl++++ ++++ ++ +   +++++ sp++  +g +++l+++ga+++++++G+ +d +Grr ++ +g ++f lg +l    a +l +++++r+++G
  KKY21681.1  15 SFGSFLYGYDLGVIAEVIASgSFMTTFN-SPDAtkQGVVVSLFTAGAFFGAMFGGPSGDYLGRRVTITFGSIVFMLGgALQTG-ARNLNYIYAGRFFAG 111
                 689999999999999999999999****.5555569*****************************************555555.36666********** PP

       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee. 188
                 +g g+l+ ++  + a++++++ rgr ++l + + ++Ga+++  ++   + +++      Wr +  +  + +++++    l ++ ++++r+   + + e 
  KKY21681.1 112 VGVGLLTMVIPLYQAELAHPSIRGRITALQQFMLGVGALCASWISYGTYIHFSetdnaqWRIPLGLQILPAVVLGA---LIMLFPESPRWLIDHGRSEk 207
                 *************************************************9***********************988...55555555555555555555 PP

       MFS_1 189 ...............................kgtgpaplvp......awkallkdpvlw..illialllf...ffgfsglltllplylqevlgls...g 242
                                                         +       + +l+k++  +  ++++++l +   ++g+s++ +++p++   + g+s   +
  KKY21681.1 208 glailaqlhangnqqdpwvlaefeqiqesitF--------EheheakSYVELFKNKSAFrrLFIAMALQAsiqMTGVSSIQYYSPTI-FAQIGIStndT 297
                 6*********6666666666666555554440........155555533334444433233233333333112457777*******7.77777774331 PP

  == domain 2  score: 31.6 bits;  conditional E-value: 8.6e-12
       MFS_1  39 tlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..fa......ss...lw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigl 125
                 ++ +++a++a  + ++++dr+Grr++l++g l+ +l++++++  +a      ++   +w +++  +v    ++ +  p++ ++ a++f    r+++++l
  KKY21681.1 302 AINSVFALIAEALCMAFIDRVGRRWTLIVGNLVNCLTFIIATilLAkfpptsTNdgaHWgFIIMTWVYNFSFSLCCGPLSWIIPAEIFDTHTRSKGVSL 400
                 67899********************************555556433454544115557756666666555566889*********************** PP

       MFS_1 126 lsa.gfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepper 179
                 +++ +f++ +++g +   ++a   + + ++f+i+ +  +l+f+   ++lpe+  ++
  KKY21681.1 401 ATMtCFAFNTMIGQVTPIAMAdVGYKFYYTFVICNFTNALFFW---AVLPET--KK 451
                 *998999999***999999994444498899999888888844...444443..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 3058.66
//
Query:       KKY21682.1  [L=446]
Description: putative peroxisomal membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-54  184.0   0.0    2.4e-54  183.6   0.0    1.2  1  Peroxin-13_N  Peroxin 13, N-terminal region
    7.9e-09   35.1   0.0    1.6e-08   34.1   0.0    1.5  1  SH3_2         Variant SH3 domain
      6e-07   29.0   0.0      1e-06   28.2   0.0    1.4  1  SH3_1         SH3 domain
    3.4e-05   23.6   0.0    5.6e-05   22.9   0.0    1.4  1  SH3_9         Variant SH3 domain


Domain annotation for each model (and alignments):
>> Peroxin-13_N  Peroxin 13, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.6   0.0   5.3e-58   2.4e-54       2     145 .]     138     280 ..     137     280 .. 0.91

  Alignments for each domain:
  == domain 1  score: 183.6 bits;  conditional E-value: 5.3e-58
  Peroxin-13_N   2 ltqsaeestratfqliesivgafgsfaqmLestymAthsSFfavvsvaeqfgrLketlgsvlsifalirllkkilskllglllekkkkekskaeefw 98 
                   lt+s+++st+atfq+iesivgafg+faqmLestymAthsSFfa+vsvaeqfg+L++tlgsvl+if+l+r+l+++++kl g+ +  +++++ + ++f 
    KKY21682.1 138 LTNSFNQSTQATFQIIESIVGAFGGFAQMLESTYMATHSSFFAMVSVAEQFGNLRNTLGSVLGIFTLMRWLRTLFAKLAGR-PPPADATALTPSAF- 232
                   899******************************************************************************.58999999999999. PP

  Peroxin-13_N  99 kkfessskkkeekeskeekkkk..kisskplllflaaviglPyllkkli 145
                   ++f s s++   ++  +++++   ++s+kp+++fl+av+glPyl+ kli
    KKY21682.1 233 ASFISGSSSGVPAT-LPDGSPDppRPSKKPFIMFLVAVFGLPYLMGKLI 280
                   99999997777433.3444444346**********************98 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   3.5e-12   1.6e-08       1      55 [.     319     379 ..     319     381 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 3.5e-12
                 EEEESS-B-SCGCCB...--B-TTEEEEEE..EEEECT.....TEEEEEE.CCCEEEEEGCGEE CS
       SH3_2   1 yvraiedyvgedkse...LsfkkGdvikvlslgskdsd.....gwwegev.gGrvGlfPsslve 55 
                 ++r++ dy++++ s    L  kkGd+++vl   sk ++     +ww+++   G +G+ Ps ++e
  KKY21682.1 319 FCRVLYDYTPANQSQgidLPVKKGDLVAVL---SKTDPmgnpsEWWHCRArSGDKGYLPSPYLE 379
                 689********99999**************...5555557778*****887*********9987 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   2.3e-10     1e-06       1      48 []     321     375 ..     321     375 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 2.3e-10
                 EESSSBEXSS...TTBXEBSTTEEEEEEEECSS.....SEEEEEETTSTEEEEEEG CS
       SH3_1   1 iAlYDYeaee...sdELsfkkGDviivleksed.....gWwkgrlkgtgkeGliPs 48 
                 ++lYDY++ +     +L+ kkGD + vl+k++      +Ww +r ++ g +G+ Ps
  KKY21682.1 321 RVLYDYTPANqsqGIDLPVKKGDLVAVLSKTDPmgnpsEWWHCRARS-GDKGYLPS 375
                 68****9988544669***************9999999********9.68*****7 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.2e-08   5.6e-05       1      49 []     322     379 ..     322     379 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.2e-08
       SH3_9   1 Alypyepredd...eLsLqrGDvitvieese.....dgWlegs.ltGrtGlvPanyve 49 
                 +ly+y+p ++     L++ +GD + v+++++     + W+ ++ ++G +G++P+ y+e
  KKY21682.1 322 VLYDYTPANQSqgiDLPVKKGDLVAVLSKTDpmgnpSEWWHCRaRSGDKGYLPSPYLE 379
                 89*****99998888************996555666*******67*********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2977.85
//
Query:       KKY21683.1  [L=1173]
Description: putative carbamoyl-phosphate synthase arginine-specific large chain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.5e-108  358.5   0.0    6.9e-84  280.6   0.0    2.3  2  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    2.1e-40  137.8   0.0    7.6e-40  136.1   0.0    2.0  2  CPSase_L_D3      Carbamoyl-phosphate synthetase large chain, 
    6.6e-18   64.9   0.0      7e-08   32.2   0.0    2.6  2  ATP-grasp        ATP-grasp domain
    1.1e-16   61.0   0.5    3.5e-07   30.0   0.1    2.4  2  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    6.1e-11   42.2   0.0    0.00032   20.4   0.0    2.7  2  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T
    2.8e-05   23.7   0.2      0.034   13.6   0.1    2.9  3  ATP-grasp_5      ATP-grasp domain
    0.00024   20.9   0.1       0.44   10.3   0.0    2.6  2  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr
  ------ inclusion threshold ------
      0.072   13.3   0.0       0.22   11.7   0.0    1.9  1  MGS              MGS-like domain
      0.094   12.2   0.0        0.3   10.5   0.0    1.8  2  Epimerase        NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.6   0.0   3.4e-87   6.9e-84       1     210 [.     215     418 ..     215     419 .. 0.99
   2 !   75.8   0.0   1.6e-24   3.2e-21       1     207 [.     752     959 ..     752     962 .. 0.89

  Alignments for each domain:
  == domain 1  score: 280.6 bits;  conditional E-value: 3.4e-87
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  D++ +++al++i++p+++s a+  +t+eeal++a+++gyP+i+++a++lGG+G+++a++ eel++l +++l+ a      +q+lvekslkg+ke+E+e
   KKY21683.1 215 DRDLFSKALNEIEIPIAESIAV--NTVEEALEAAESVGYPIIVRSAYALGGLGSGFANDAEELRNLSSRSLSLA------PQILVEKSLKGWKEVEYE 304
                  99*******************9..**************************************************......8***************** PP

                  EEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS-- CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGld 194
                  v+rDa++n+itvc++en+++l  +t+++i+vAPsqtL+dee+++lr+aa+k+vr++gvvg+++v+++l+p+  +y viEvN+Rls++sala+kaTG++
   KKY21683.1 305 VVRDASNNCITVCNMENFDPLgiHTGDSIVVAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNARLSRSSALASKATGYP 402
                  ************************************************************************************************** PP

                  HHHHHHHHHTT--GCG CS
  CPSase_L_D2 195 lvkeaakialgekLee 210
                  l+++aaki+lg++L+e
   KKY21683.1 403 LAYTAAKIGLGHTLPE 418
                  **************97 PP

  == domain 2  score: 75.8 bits;  conditional E-value: 1.6e-24
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  D+++++++l+ i+v+    ++   +++ +a a+a+++gyPv++++++ l G  m v+++++el++ + +a+a ++    ++ v + k+++g +ei+v+
   KKY21683.1 752 DRHKFSQILDSIGVDQPAWKEL--TSVTDAEAFAESVGYPVLVRPSYVLSGAAMSVIKTHDELKDKLLSASAVSP----DHPVVITKFIEGAQEIDVD 843
                  999***********98877777..99************************************************6....9****************** PP

                  EEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTE......EEEEEEESS--CCHHHHH CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkske......yyviEvNtRlsvesalae 188
                   +   +gn i  +  e + +   + ++   v P   L+++   + +e a kv+++ +++g  +++ +  ++ ++        viE N R s++ +  +
   KKY21683.1 844 AVGS-AGNLILHAVSEHVENAgvHSGDATLVLPPVNLDENVMARCKEIAEKVAKAWNITGPFNMQIIKAEDPSNpsgpplLKVIECNLRASRSFPFVS 940
                  *985.677777777777776667******************************************98765443322333389**************** PP

                  HHHS--HHHHHHHHHTT-- CS
  CPSase_L_D2 189 kaTGldlvkeaakialgek 207
                  k+ G++ + +a k  +g +
   KKY21683.1 941 KVLGVNFIDAATKALVGRD 959
                  *********9999877766 PP

>> CPSase_L_D3  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       6.5   1.3e+04      60      79 ..     118     138 ..     113     160 .. 0.67
   2 !  136.1   0.0   3.8e-43   7.6e-40       3     122 .]     504     625 ..     502     625 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6.5
  CPSase_L_D3  60 eellreakklGfsDkqia.el 79 
                  +++l+ +k++G s   i+ ++
   KKY21683.1 118 SQALKALKEAGVSSVLINpNI 138
                  578999999999988776433 PP

  == domain 2  score: 136.1 bits;  conditional E-value: 3.8e-43
  CPSase_L_D3   3 lkeptdeRifaiaeal.rrglsveeiheltkidpwFLekleelvelekelkkkkk..eldeellreakklGfsDkqiaelleeeeeeevrelrkklgi 97 
                  lk+ptd+R +a+++a+ ++g+sve++++ltkid+wFL+k++++v++++e+++  +   ++++++ +akk+GfsDkqia  ++ ++e+evr+ rk+ gi
   KKY21683.1 504 LKSPTDRRWLAVMQAMlHEGYSVEKVNNLTKIDKWFLYKIQNMVDCQHEMEDIGSlfGINRDIMLKAKKMGFSDKQIALAVG-STEDEVRARRKRFGI 600
                  899*************9**********************************999999*********************8876.78889********** PP

  CPSase_L_D3  98 lpvykrvDtcAaeFeaetpYlYstY 122
                  +p +k++Dt+AaeF+a+t+YlY+tY
   KKY21683.1 601 TPWVKKIDTLAAEFPADTNYLYTTY 625
                  ************************9 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   3.5e-11     7e-08       2     147 ..     224     374 ..     223     390 .. 0.85
   2 !   29.8   0.0     2e-10     4e-07       3     145 ..     762     910 ..     760     915 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 3.5e-11
                 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC..GTTCEEEEE----SEEEEEEEEEETTC-EEE--EEEE CS
   ATP-grasp   2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal..keekvivEefvpfekElsvlvvrsaeGetafypvvet 98 
                 ++ ++p+++ +av++ ee+ eaae++g+p++v+ +  +  G G+ + +++e+l+++ +     + +++vE+  +  kE+   vvr+a+ +  ++  +e+
  KKY21683.1 224 NEIEIPIAESIAVNTVEEALEAAESVGYPIIVR-SAYALGGLGSGFANDAEELRNLSSRSlsLAPQILVEKSLKGWKEVEYEVVRDASNNCITVCNMEN 321
                 67899****************************.999******************99988778899*********************999999999999 PP

                 EEETTEEE...EEEECEE-SCHHHHHHHHHHH.HHHHHHTSSEEEEEEEEEET CS
   ATP-grasp  99 vqedgilr...lsvapaevsekaqkkaeeiak.kiveeLggvGvfavElFvle 147
                     gi     ++vap++  ++++ +  ++a+ kiv++Lg+vG   v   ++ 
  KKY21683.1 322 FDPLGIHTgdsIVVAPSQTLSDEEYHMLRTAAiKIVRHLGVVGECNVQYALQP 374
                 999988743337899988777766555555444**********8887765555 PP

  == domain 2  score: 29.8 bits;  conditional E-value: 2e-10
                 TTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC....GTTCEEEEE----SEEEEEEEEEETTC-EEE--EEE CS
   ATP-grasp   3 klglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal....keekvivEefvpfekElsvlvvrsaeGetafypvve 97 
                 + g+  p +  ++s +++e++ae++g+pv+v+ +    +G   sv++ +++l++ l  +     +++v++ +f++  +E+ v +v    G+    +v e
  KKY21683.1 762 SIGVDQPAWKELTSVTDAEAFAESVGYPVLVR-PSYVLSGAAMSVIKTHDELKDKLLSAsavsPDHPVVITKFIEGAQEIDVDAVG-SAGNLILHAVSE 858
                 678999**************************.99999************9998766665788899**************988775.579999999999 PP

                 EEEE....TTEEEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEE CS
   ATP-grasp  98 tvqe....dgilrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFv 145
                 +v++    +g+  l++ p +++e+  ++ +eia+k++++ ++ G f + +  
  KKY21683.1 859 HVENagvhSGDATLVLPPVNLDENVMARCKEIAEKVAKAWNITGPFNMQIIK 910
                 99871111456789*******************************9987765 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.1   4.1e-10   8.1e-07      26     173 ..     240     385 ..     224     387 .. 0.85
   2 !   30.0   0.1   1.7e-10   3.5e-07      15     153 ..     765     902 ..     759     913 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 4.1e-10
                      HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-HHHHHC CS
  Dala_Dala_lig_C  26 ellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkydekvlvEeai.egreievavlgneklevsevgeivvkkgfydyeakys 118
                      e   +  e++gyp++V++a +   +G   ++ +eel++  +++++   ++lvE+ +   +e+e  v+ + ++++ +v ++    + +d    ++
       KKY21683.1 240 EEALEAAESVGYPIIVRSAYALGGLGSGFANDAEELRNLSSRSLSLAPQILVEKSLkGWKEVEYEVVRDASNNCITVCNM----ENFDPLGIHT 329
                      445567899************99*********************************6679********777777766554....4566666677 PP

                      .TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTT.EEEEEEEE CS
  Dala_Dala_lig_C 119 ddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteeg.eivlnEvN 173
                      +d++ +    +l++e+++ ++++a+k+ + l++ G + v + l+ +g +  + EvN
       KKY21683.1 330 GDSIVVAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGlDYRVIEVN 385
                      89999999999********************************9999445677887 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 1.7e-10
                      EETTHHCH-H-.HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHH..HHTT-SCEEEEE--.ESEEEEEEEEE.TSSCEEEEEEE CS
  Dala_Dala_lig_C  15 lekeeakeekk.ellekveeelgypvfVKpareGSSvGvskveseeelkeaiee..afkydekvlvEeai.egreievavlg.neklevsevge 103
                      +++ ++ke ++    e+  e++gypv+V+p+   S   +s +++ +elk+ + +  a++ d+ v++ ++i  ++ei+v  +g  ++l  + v e
       KKY21683.1 765 VDQPAWKELTSvTDAEAFAESVGYPVLVRPSYVLSGAAMSVIKTHDELKDKLLSasAVSPDHPVVITKFIeGAQEIDVDAVGsAGNLILHAVSE 858
                      44444444443233456799*****************************99865116788**********8899****9999567788888999 PP

                      EE-SSSSS-HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--S CS
  Dala_Dala_lig_C 104 ivvkkgfydyeakysddkaqlevpaklekeveekiqelalkaykaldlrG 153
                      +v + g+       s+d++ +  p++l+++v ++ +e+a k+ ka +++G
       KKY21683.1 859 HVENAGVH------SGDATLVLPPVNLDENVMARCKEIAEKVAKAWNITG 902
                      99888886......567778899999999999999999999999888777 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0     6e-07    0.0012      49     119 ..     349     422 ..     337     433 .. 0.79
   2 !   20.4   0.0   1.6e-07   0.00032       4     123 ..     827     967 ..     825     977 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 6e-07
  ATPgrasp_Ter  49 lielaerlaeefgldglvnvQvrededg..pkLLEiNpRasGGlg.ysalaGvnlpylalklllgleteeveep 119
                   l  +a ++++++g+ g  nvQ+  + dg  ++++E+N+R s      s ++G  l+y a+k  lg+  +e ++ 
    KKY21683.1 349 LRTAAIKIVRHLGVVGECNVQYALQPDGldYRVIEVNARLSRSSAlASKATGYPLAYTAAKIGLGHTLPELPNA 422
                   557899******************9999889*********96555156777*************9855554444 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 1.6e-07
  ATPgrasp_Ter   4 allvmeyLeg.pEySvDvlaekgevl.aavpRrKekgglq...........elekd..eelielaerlaeefgldglvnvQvreded.....gp... 77 
                   ++++++++eg +E+ vD +  +g+++  av    e+ g++           +l+++  ++  e+ae++a++ +++g +n+Q+ + ed     gp   
    KKY21683.1 827 PVVITKFIEGaQEIDVDAVGSAGNLIlHAVSEHVENAGVHsgdatlvlppvNLDENvmARCKEIAEKVAKAWNITGPFNMQIIKAEDpsnpsGPpll 923
                   67888899985699999999988887467877777555555667788887766655224567999****************8666543333233333 PP

  ATPgrasp_Ter  78 kLLEiNpRasGGlgy.salaGvnlpylalklllgleteeveepeegl 123
                   k++E N Ras  +   s + Gvn++++a k+l g++   v+ep+  +
    KKY21683.1 924 KVIECNLRASRSFPFvSKVLGVNFIDAATKALVGRD---VPEPRDIM 967
                   57899*******98526677**************64...44444444 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   1.7e-05     0.034      17      52 ..     221     256 ..     201     260 .. 0.84
   2 !    7.0   0.0    0.0018       3.6      11      51 ..     752     792 ..     745     796 .. 0.91
   3 ?   -2.9   0.0       1.9   3.7e+03      59      90 ..     865     896 ..     844     901 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.7e-05
  ATP-grasp_5  17 elleaygipvvetrlassaeeaveaaeeigypvvlK 52 
                  + l+ ++ip++e++ ++++eea+eaae++gyp+ ++
   KKY21683.1 221 KALNEIEIPIAESIAVNTVEEALEAAESVGYPIIVR 256
                  447789**************************9876 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0018
  ATP-grasp_5  11 teaeakelleaygipvvetrlassaeeaveaaeeigypvvl 51 
                  + ++  ++l+ +g++ +  +  +s+++a + ae++gypv +
   KKY21683.1 752 DRHKFSQILDSIGVDQPAWKELTSVTDAEAFAESVGYPVLV 792
                  567889********************************976 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.9
  ATP-grasp_5  59 lhKtdvgGvrlnlkdaeevraaaeeilervke 90 
                  +h  d+  v   ++ +e+v a ++ei e+v++
   KKY21683.1 865 VHSGDATLVLPPVNLDENVMARCKEIAEKVAK 896
                  57778888888888899999999999999977 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0012       2.4       6     104 ..     220     311 ..     215     389 .. 0.76
   2 !   10.3   0.0   0.00022      0.44       8      99 ..     758     845 ..     753     870 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0012
                 HHHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---S.EEEEEEEEECTT CS
      GARS_A   6 akdllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleG.eEvsllalvdgk 103
                 +k  l++++ip+ae  a++ +eea e  e+++ ++ +v+++   +g g   a+++ee  +  +  l+         ++++E+ l+G +Ev   ++ d +
  KKY21683.1 220 SK-ALNEIEIPIAESIAVNTVEEALEAAESVGYPI-IVRSAYALGGLGSGFANDAEELRNLSSRSLS------LAPQILVEKSLKGwKEVEYEVVRDAS 310
                 44.4689****************************.7777777789999999999998887777775......56889999999996688777777764 PP

                 E CS
      GARS_A 104 t 104
                 +
  KKY21683.1 311 N 311
                 3 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00022
                 HHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---S.EEEEEEEE CS
      GARS_A   8 dllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleG.eEvsllal 99 
                 ++l+ +g+  + ++++t++ +a+++ e+++ ++  v+++ + +g  ++v k+++e  +   ++l+  +  +  + vvi +++eG +E+ + a+
  KKY21683.1 758 QILDSIGVDQPAWKELTSVTDAEAFAESVGYPV-LVRPSYVLSGAAMSVIKTHDELKD---KLLS-ASAVSPDHPVVITKFIEGaQEIDVDAV 845
                 68899****************************.99****************998654...4454.44456899*********9447777665 PP

>> MGS  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.22       4      94 ..    1046    1134 ..    1043    1135 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                  HHHHHHHHTTCEEEEEH.HHHHHHHHTT--EEECCCCHSTGSGGTHCHHHHHHHHTTSCCEEEEE--THHHHHHCHHHHHHHHHHHTTSHEE CS
         MGS    4 elakklkelgfellATg.GTakllkeagipvtevvektgegerlggrveildaikngeidlvintlypfkatvakdgykirraaenidIplp 94  
                  ++++ l+ lg++ +A +   +k+l+e g +    ve+++++ + ++r  + d  k+++i+ v n+   +++t  +++y +rr a+++++pl+
  KKY21683.1 1046 KIVEYLQPLGYKFYAASeDVKKHLEE-GSKEPITVEVIEFP-KEDKR-ALRDVFKKYDIKGVFNLAAARAKTLLDEDYVMRRNAVDFGVPLF 1134
                  67888999999999755055566665.55547789999999.55544.59**********************99****************97 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.9   5.8e+03      10      69 ..     116     174 ..     113     180 .. 0.70
   2 ?   10.5   0.0   0.00015       0.3      14      75 ..    1047    1112 ..    1045    1128 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.9
                 HHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEE CS
   Epimerase  10 iGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavi 69 
                  Gs+ +kal+e+g+  + ++ +  + +t ++   e+++l +t ++ ++ ++++e+pd ++
  KKY21683.1 116 SGSQALKALKEAGVSSVLINPNIATIQTDHKLADEVYYLPVT-PEYVTYVIERERPDGIF 174
                 599999999999988666666655555544444477777777.45577778888888777 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00015
                  HHHHHHHCTSEEEEEES-STTTTCHHCHHC...EEEE--TT-HHHHHHHHHHHT-SEEEE--S.-- CS
   Epimerase   14 lvkallekgyevigldrlssasntarledl...elveldltdrsalerlfkeeqpdavihlAa.vg 75  
                  +v++l+  gy+  + + + +++ ++  ++    e++e    d+ al+++fk++++  v++lAa  +
  KKY21683.1 1047 IVEYLQPLGYKFYAASEDVKKHLEEGSKEPitvEVIEFPKEDKRALRDVFKKYDIKGVFNLAAaRA 1112
                  78999999999999999955544443333389999**************************88333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.51
# Mc/sec: 6970.76
//
Query:       KKY21684.1  [L=467]
Description: hypothetical protein UCRPC4_g03450 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1064  (0.0593452); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 3440.58
//
Query:       KKY21685.1  [L=834]
Description: putative cell cycle checkpoint protein rad17 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-22   79.4   0.0    6.9e-22   78.3   0.0    1.5  1  Rad17          Rad17 P-loop domain
      0.001   19.4   0.1       0.13   12.5   0.0    3.1  3  AAA_22         AAA domain
     0.0012   18.0   0.0     0.0022   17.1   0.0    1.3  1  T2SSE          Type II/IV secretion system protein
     0.0035   17.1   0.0     0.0096   15.7   0.0    1.6  2  AAA_30         AAA domain
     0.0037   17.7   0.0      0.013   16.0   0.0    1.9  1  AAA            ATPase family associated with various cellular
     0.0041   17.5   0.0      0.057   13.8   0.0    2.5  2  AAA_16         AAA ATPase domain
     0.0079   16.2   0.0      0.024   14.7   0.0    1.8  1  AAA_5          AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.011   15.9   0.3       0.61   10.2   0.1    2.4  2  AAA_33         AAA domain
      0.014   14.4   0.0      0.053   12.5   0.0    1.9  2  AAA_6          Hydrolytic ATP binding site of dynein motor re
      0.038   13.5   0.0       0.13   11.8   0.0    1.8  2  AAA_7          P-loop containing dynein motor region
      0.064   12.8   0.0       0.14   11.8   0.0    1.5  1  AAA_25         AAA domain
      0.067   13.6   0.1       0.23   11.8   0.0    1.9  2  RNA_helicase   RNA helicase
      0.067   13.1   0.0       0.16   11.9   0.0    1.7  1  NACHT          NACHT domain
      0.083   12.6   0.0       0.17   11.6   0.0    1.5  1  RuvB_N         Holliday junction DNA helicase RuvB P-loop dom
        0.1   12.6   0.2       0.26   11.3   0.0    1.7  2  TsaE           Threonylcarbamoyl adenosine biosynthesis prote
       0.12   12.1   0.7       0.52   10.0   0.0    2.2  2  AAA_11         AAA domain
       0.13   12.2   0.0       0.28   11.1   0.0    1.5  1  RsgA_GTPase    RsgA GTPase
       0.14   12.0   0.2       0.59   10.0   0.0    1.9  2  Pox_polyA_pol  Poxvirus poly(A) polymerase nucleotidyltransfe
       0.14   11.9   0.0       0.37   10.6   0.0    1.7  1  dNK            Deoxynucleoside kinase


Domain annotation for each model (and alignments):
>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.0   7.3e-25   6.9e-22       6     163 ..     172     328 ..     168     333 .. 0.80

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 7.3e-25
       Rad17   6 nelWfekykPekaeelavhkkkieevkewlkadvLesrkkriLLisGPsGCgkstvvkvLskelgiklrewlnpvslkepdnqksdfkgltekesrfls 104
                 + +W e+y P  ++elavhkkk+++v+ wl       +++++L++ GP+G gk+t++  L+k + +++ ew n+++        s   + +  ++ fl 
  KKY21685.1 172 QRPWAERYAPVGLDELAVHKKKVDDVRSWLVDALDHPQRRHLLILKGPAGSGKTTTLMLLAKAMDVQVVEWKNSTT-----SDGSASNSFVSNFDDFLN 265
                 679**************************976665666677********************************998.....334445566667777888 PP

       Rad17 105 qiesfkeleLkd.akylklqklGddlrtdkklilvedlPnkfyrds...dalrevirkylrss 163
                 +   f  l + +    l l    dd  + ++l+ v+++P  f r+s   +++r  ++++l s+
  KKY21685.1 266 RGGMFGSLDVINpFSTLPLPVAADDEGAGRRLLAVDEFPTTFSRSSttlQSFRSSLLRFLSSG 328
                 8888887765541455678888999999****************9923344555566666665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.11   1.1e+02      11      39 ..      52      82 ..      52     116 .. 0.79
   2 !   12.5   0.0   0.00014      0.13       4      63 ..     210     263 ..     206     343 .. 0.71
   3 ?   -2.9   0.0       8.1   7.7e+03      85     102 ..     521     537 ..     499     572 .. 0.60

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.11
      AAA_22 11 tGesGtGKTtllrrlleqldeeakaee..er 39
                +G  G GK+ +l  ++++++ee+   +  ++
  KKY21685.1 52 VGAFGGGKSKSLHSFFSKATEEERWHKkeAD 82
                6899**************9876544445544 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00014
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevv...fvtlpsstsskdllrellra 63 
                 ++ +l++ G++G+GKTt+l  l++           +++vv     t + ++ s ++ +++  +
  KKY21685.1 210 RRHLLILKGPAGSGKTTTLMLLAKAM---------DVQVVewkNSTTSDGSASNSFVSNFDDF 263
                 577899*************9999987.........5666644222222222555555555555 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 8.1
      AAA_22  85 alraravielliiDEaqh 102
                 +l++ +v + ++iDE  +
  KKY21685.1 521 HLHRPMV-SQVMIDELMN 537
                 3444444.6667777544 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.3e-06    0.0022     104     152 ..     183     234 ..     173     241 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.3e-06
       T2SSE 104 tlddlgaeealkekia....evlrkavrerglilvsGgTgsGKttllyallke 152
                  ld+l+++++  ++++    ++l ++ ++r l+++ G+ gsGKtt+l  l k 
  KKY21685.1 183 GLDELAVHKKKVDDVRswlvDALDHP-QRRHLLILKGPAGSGKTTTLMLLAKA 234
                 56677766666655551111566677.89*****************9877665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       7.8   7.4e+03      17      38 ..      45      66 ..      40      76 .. 0.70
   2 !   15.7   0.0     1e-05    0.0096      17      43 ..     210     236 ..     203     247 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 7.8
      AAA_30 17 gdrvavltGpAGtGKttalkal 38
                +d+ +  +G+ G GK+ +l + 
  KKY21685.1 45 PDKRKSKVGAFGGGKSKSLHSF 66
                5555666899999**9999876 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1e-05
      AAA_30  17 gdrvavltGpAGtGKttalkalreawe 43 
                 ++ + +l+GpAG+GKtt+l  l++a++
  KKY21685.1 210 RRHLLILKGPAGSGKTTTLMLLAKAMD 236
                 45689***************9999875 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.3e-05     0.013       2      35 ..     215     248 ..     214     267 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.3e-05
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsell 35 
                 +l Gp G GKT++   +ak ++v+++e + s+  
  KKY21685.1 215 ILKGPAGSGKTTTLMLLAKAMDVQVVEWKNSTTS 248
                 799************************9988765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.75     7e+02      31      62 ..      53      83 ..      51     130 .. 0.75
   2 !   13.8   0.0   6.1e-05     0.057      14      51 ..     203     238 ..     195     352 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.75
      AAA_16 31 GesGvGKsslvrellralekdggiflrgkcdq 62
                G+ G GKs+ + +++  +++++  + + ++d+
  KKY21685.1 53 GAFGGGKSKSLHSFFSKATEEE-RWHKKEADD 83
                66788**********9999884.444444444 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 6.1e-05
      AAA_16  14 salervrsgrpelvllsGesGvGKsslvrellralekd 51 
                 +al+     r +l++l G++G+GK++ +  l++a+  +
  KKY21685.1 203 DALDHPQ--RRHLLILKGPAGSGKTTTLMLLAKAMDVQ 238
                 5555333..33899*****************9987655 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.5e-05     0.024       2      29 ..     214     241 ..     213     249 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.5e-05
                 EEEE--SSSSHHHHHHHGGGGBS--EEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnrevey 29 
                 ++L+Gp G+gK++  + la+a+  +v++
  KKY21685.1 214 LILKGPAGSGKTTTLMLLAKAMDVQVVE 241
                 79*******************9665544 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.089        84      65     138 ..      27      96 ..       6     100 .. 0.77
   2 ?   10.2   0.1   0.00065      0.61       1      28 [.     213     240 ..     213     249 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.089
      AAA_33  65 kalsagrnvil.datnlsrrerarflklarrlgvpvrivvvetdeetlkeRlakRaangddrsevpeealdrqka 138
                 ++++a+r +++  ++  s+++r+ ++ ++   g + + ++   + +t +eR +k++a+   +s + +e l++  +
  KKY21685.1  27 RTRRAKRKLLAtSSPISSPDKRKSKVGAFG--GGKSKSLHSFFSKATEEERWHKKEAD---DSTARLEELEDIDD 96 
                 345555664443899999***********9..6688888889999999*******995...45677777777655 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00065
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavll 28 
                 l++l G++GsGK+t +  l+k+ +++++
  KKY21685.1 213 LLILKGPAGSGKTTTLMLLAKAMDVQVV 240
                 68999************99998776665 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.6e-05     0.053      37      73 ..     216     252 ..     206     289 .. 0.75
   2 ?   -2.5   0.0       2.1   1.9e+03     249     279 ..     738     769 ..     733     794 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.6e-05
       AAA_6  37 paGpagtGKtEtvkdLakalakqvvvfncsdqldyks 73 
                 ++Gpag GKt t   Laka+ +qvv  + s + d ++
  KKY21685.1 216 LKGPAGSGKTTTLMLLAKAMDVQVVEWKNSTTSDGSA 252
                 68**********************9887766655444 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.1
       AAA_6 249 pklvaeDvplfkglis.dlFpgvelpesdyee 279
                  +l a+D ++f++l++   F g+++p+ d+ee
  KKY21685.1 738 HHLEARDSSIFTDLMNiTQFSGIDAPNDDEEE 769
                 567889********984569999998855432 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.4   2.3e+03      39      60 ..      52      73 ..      46      80 .. 0.77
   2 ?   11.8   0.0   0.00014      0.13      31      88 ..     209     266 ..     189     274 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.4
       AAA_7 39 vGptGtGKtviikdllkkldke 60
                vG  G GK+  ++++++k  +e
  KKY21685.1 52 VGAFGGGKSKSLHSFFSKATEE 73
                8999**********66665544 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00014
       AAA_7  31 knkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklek 88 
                 ++++ ++l Gp+G+GKt++++ l k++d + +  ++ + s    +n++ + +++ l++
  KKY21685.1 209 QRRHLLILKGPAGSGKTTTLMLLAKAMDVQVVEWKNSTTSDGSASNSFVSNFDDFLNR 266
                 455666788*******************999999999999999999999998888865 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00014      0.14      21      57 ..     197     235 ..     184     250 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
      AAA_25  21 prrwlvk..gllpagelallaGapgtGKttlaldlalav 57 
                  r+wlv+  ++  + +l +l G+ g+GKtt ++ la a+
  KKY21685.1 197 VRSWLVDalDHPQRRHLLILKGPAGSGKTTTLMLLAKAM 235
                 6899999878999*******************9999776 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         6   5.7e+03       5      26 ..      53      74 ..      52      87 .. 0.73
   2 ?   11.8   0.0   0.00025      0.23       2      46 ..     215     259 ..     214     263 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 6
  RNA_helicase  5 GpsgeGKStlakeLakallkkl 26
                  G+ g GKS   +++ ++ +++ 
    KKY21685.1 53 GAFGGGKSKSLHSFFSKATEEE 74
                  6779999999999877776554 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00025
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsvys.rnpeddfwdg 46 
                   +l Gp+g GK+t+   Laka+  ++  ++k+s+ s ++++++f+++
    KKY21685.1 215 ILKGPAGSGKTTTLMLLAKAMDVQV-VEWKNSTTSdGSASNSFVSN 259
                   789******************9888.88889998867777777665 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00017      0.16       2      24 ..     213     235 ..     212     267 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
                 CEEEEC-TTTCHHHHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqklalaw 24 
                 l+il+G+aGsGKTt l  la a+
  KKY21685.1 213 LLILKGPAGSGKTTTLMLLAKAM 235
                 789***********999988775 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00018      0.17      29      61 ..     207     239 ..     180     250 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00018
      RuvB_N  29 reealdhvllyGpPGlGkttlakiiakelgvkl 61 
                   +    ++l Gp G Gktt  +++ak ++v++
  KKY21685.1 207 HPQRRHLLILKGPAGSGKTTTLMLLAKAMDVQV 239
                 44444456799*******************987 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       9.2   8.7e+03      47      60 ..     137     150 ..     128     154 .. 0.76
   2 ?   11.3   0.0   0.00028      0.26      18      48 ..     205     240 ..     189     248 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 9.2
                 ----TTTTSEEEEE CS
        TsaE  47 evkSPTFtlveeYe 60 
                 +v+SP F   ++++
  KKY21685.1 137 SVNSPAFLASQKFS 150
                 79*****9888775 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00028
                 H.....TEEEEEEESTTSSHHHHHHHHHHHTT---- CS
        TsaE  18 l.....gdvilLeGdLGaGKTtlvrglakalgveev 48 
                 l     +++++L+G+ G+GKTt    laka++v+ v
  KKY21685.1 205 LdhpqrRHLLILKGPAGSGKTTTLMLLAKAMDVQVV 240
                 4444445679*********************99743 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.8       2.3   2.2e+03     115     136 ..      69      87 ..      23     135 .. 0.45
   2 ?   10.0   0.0   0.00056      0.52      15      42 ..     209     236 ..     195     258 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.3
      AAA_11 115 krlekeekaqlakeiskelekl 136
                 k  e+e   + +k+ ++ + + 
  KKY21685.1  69 KATEEE---RWHKKEADDSTAR 87 
                 222221...1111111111111 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00056
      AAA_11  15 seseitliqGPPGtgKTktivellsqll 42 
                 +++++ +++GP G+gKT+t++ l +++ 
  KKY21685.1 209 QRRHLLILKGPAGSGKTTTLMLLAKAMD 236
                 4556899**************9999984 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00029      0.28      65     133 ..     172     245 ..     161     254 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00029
                  HHHHHHHHHHTTSEEEE--TTTHTTH.....HHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT-----S----- CS
  RsgA_GTPase  65 leelkeelealgyevllvsaktkegl.....eelkellkdktsvlvGqSGvGKStLinallpelelktgevsek 133
                   + ++e+++ +g++ l+v++k+ +++     ++l +  + ++ +l G+ G GK+t +  l+  +++++ e +++
   KKY21685.1 172 QRPWAERYAPVGLDELAVHKKKVDDVrswlvDALDHPQRRHLLILKGPAGSGKTTTLMLLAKAMDVQVVEWKNS 245
                  4678889999999888888776655411111455666667899*******************999999887665 PP

>> Pox_polyA_pol  Poxvirus poly(A) polymerase nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00062      0.59      45      83 ..     547     588 ..     508     595 .. 0.72
   2 ?   -1.4   0.0         2   1.9e+03      92     128 ..     719     756 ..     717     758 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00062
  Pox_polyA_pol  45 lr.rknk.scvcyGsyslyllnreiky.gdidllqtnartfl 83 
                    l   +++    c G + l  ln  i+y +d dll+t++r+ l
     KKY21685.1 547 LSsLHENyVLSCNGNFFLEHLNDCIDYlSDSDLLDTESRRSL 588
                    335444404559***************78**********987 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2
  Pox_polyA_pol  92 litGrd.vvllkvPylknyivlkdeedahiidsfnirq 128
                    +it r+ ++l  +Pyl++   l+ ++++   d +ni q
     KKY21685.1 719 FITARSdLLLDYLPYLQKIHHLEARDSSIFTDLMNITQ 756
                    5666651455579*****99999999999999999987 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00039      0.37       2      28 ..     215     241 ..     214     258 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
                 EEEESTTSSHHHHHHHHHCCSTCEEEE CS
         dNK   2 vveGnIgaGKstlvklLskklgvkvfe 28 
                  + G+ g+GK+t + lL+k+++v+v+e
  KKY21685.1 215 ILKGPAGSGKTTTLMLLAKAMDVQVVE 241
                 578********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (834 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.50
# Mc/sec: 5046.00
//
Query:       KKY21686.1  [L=738]
Description: putative dnm1 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.9e-109  364.7   0.0   8.8e-109  363.1   0.0    1.8  2  Dynamin_M  Dynamin central region
    1.3e-35  122.9   0.6    8.2e-35  120.3   0.0    2.4  2  Dynamin_N  Dynamin family
      1e-32  112.1   1.4    2.2e-32  111.1   1.4    1.6  1  GED        Dynamin GTPase effector domain


Domain annotation for each model (and alignments):
>> Dynamin_M  Dynamin central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       0.5     3e+03     228     247 ..      45      64 ..      37      76 .. 0.78
   2 !  363.1   0.0  1.5e-112  8.8e-109       1     284 [.     171     457 ..     171     458 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.5
   Dynamin_M 228 elkrFpnLreeikevvedll 247
                 ++++F ++r+ei++ ++++ 
  KKY21686.1  45 KFENFEHVRQEIENETSRIA 64 
                 89999999999999988775 PP

  == domain 2  score: 363.1 bits;  conditional E-value: 1.5e-112
   Dynamin_M   1 vvdilenkvipLklGYvgVvnRsqkdInkkksieealkkEkaFFeshpayrkladkaGtpyLakkLnqiLvehIrkslPelkkkineklqklekeleel 99 
                 ++dil+++v+pLklG++gVvnRsq+dI+++k++++alk+E++FF++hpayr++a+++Gt++Lak+Lnq+L++hIr+ lP++k+++n+++ ++++el+++
  KKY21686.1 171 ALDILTGRVYPLKLGFIGVVNRSQQDIQTGKPMADALKAESDFFRHHPAYRNMATRCGTQFLAKMLNQTLMSHIRDRLPDIKARLNTLMGQTQQELASY 269
                 68************************************************************************************************* PP

   Dynamin_M 100 geskpsde.ektklllqlitkfkedfkklieGe.sevstkelsggarireiFnetlekslekidpleelsdeeirtairnsrGrelplfvpekaFealv 196
                 g+++ s + ++++l+lql+t f+++f ++i+G+ se+stkel ggari++iFn+++++sl++idp+++ls  +irtairns+G++++lfvpe aF+ lv
  KKY21686.1 270 GSKQFSGKeHRGSLILQLMTRFATSFMSSIDGTsSEISTKELGGGARIYYIFNDVFGNSLDTIDPTHNLSVLDIRTAIRNSTGPRPSLFVPELAFDLLV 368
                 *76666666************************55599************************************************************* PP

   Dynamin_M 197 kkqikkleepalkcvelVyeelekiveklek.elkrFpnLreeikevvedllreqeeptkemienliemelayintnhpdfigalkair 284
                 k+qik le p+++cvelVyeel+ki++++ + el rFp+L+ ++ evv+dllre++ p+  ++e+li++++ayintnhp+f+ga++a++
  KKY21686.1 369 KPQIKLLEIPSQRCVELVYEELIKICHTCGStELMRFPRLQGKLIEVVSDLLRERLGPCSTYVESLIAIQRAYINTNHPNFLGAAAAMS 457
                 ****************************9999*****************************************************9986 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.0   1.4e-38   8.2e-35      51     168 .]      31     162 ..      11     162 .. 0.95
   2 ?   -0.7   0.5      0.22   1.3e+03      89      89 ..     504     504 ..     450     700 .. 0.57

  Alignments for each domain:
  == domain 1  score: 120.3 bits;  conditional E-value: 1.4e-38
                 ..SSEEEE....T-EB--CHHHHHHHHHHHHHHHTSSSS--SS-EEEEEEETTS-SEEEEE---B-SSSGTTS.........HHHHHHH.STTEEEEEE CS
   Dynamin_N  51 vkeelkek....ekkledfsevreeieketekiagankgiskkvillkilsllvkgltlvDlPGldsvnkrdq.........elvkeyi.kkadiilav 135
                  + e+ e+     +k+e+f++vr+eie+et++iag nkgi++++i+lki+s++v +ltlvDlPGl++v+ +dq          l+ eyi k+++iilav
  KKY21686.1  31 GQGEWAEFhhlpGRKFENFEHVRQEIENETSRIAGHNKGINRQPINLKIYSPHVLNLTLVDLPGLTKVPIGDQpadiekqtrGLISEYIaKPNSIILAV 129
                 5667888888889************************************************************************************** PP

                 EETTS-CCC-CHHHHHHHHSTTBTTEEEEEE-C CS
   Dynamin_N 136 tsanhdlsnsealflarevdpkgkrtivvltkl 168
                 ++an+d+ nseal+lar+vdp g+rti+vltk+
  KKY21686.1 130 SPANVDIVNSEALKLARHVDPMGRRTIGVLTKI 162
                 *******************************95 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.22
                 S CS
   Dynamin_N  89 k 89 
                 +
  KKY21686.1 504 Q 504
                 1 PP

>> GED  Dynamin GTPase effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   1.4   3.6e-36   2.2e-32       1      92 []     646     737 ..     646     737 .. 0.98

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 3.6e-36
                 XXXXXTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCCCCHHHCCTTSGGGHHHHT---SCHCCCCHHHHHHHHHHHHHCCCCCHH CS
         GED   1 reeseveeirslvksYfnivrktiadqiPkaimhllvneakeslqkellakLykkedldeLLkEdeeiaekRkelkkrlealkkAreilsev 92 
                 ree+e+e ir+l++sYfnivr+tiadq+Pkaimhllvn++++++q++l+++Lyk++ + +LL Ed++i+++R++++k l+++k+A +i+ ev
  KKY21686.1 646 REEMETELIRRLISSYFNIVRETIADQVPKAIMHLLVNYSRDEVQNRLVSELYKEDLFGDLLYEDDNIKKEREKCEKLLATYKEAARIVGEV 737
                 689*************************************************************************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (738 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.37s 00:00:01.10 Elapsed: 00:00:00.53
# Mc/sec: 4203.50
//
Query:       KKY21687.1  [L=343]
Description: putative phosphopantetheine attachment site-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-21   75.9   0.3    9.8e-21   74.6   0.1    1.8  2  Glyco_hydro_79C  Glycosyl hydrolase family 79 C-terminal beta


Domain annotation for each model (and alignments):
>> Glyco_hydro_79C  Glycosyl hydrolase family 79 C-terminal beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.29   5.2e+03      41      54 ..      67      95 ..      27     128 .. 0.50
   2 !   74.6   0.1   5.5e-25   9.8e-21       1     103 []     238     340 ..     238     340 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.29
  Glyco_hydro_79C 41 g..............gksvkvkrLtap.g 54
                                     +s +v+ L a  g
       KKY21687.1 67 PdlspdifqagvyleVSSFNVSTLAALeG 95
                     13444444444444445555555555544 PP

  == domain 2  score: 74.6 bits;  conditional E-value: 5.5e-25
  Glyco_hydro_79C   1 aYavyesgklarvvliNleaynststgrpsvtvtlsglseggksvkvkrLtapgvdadan......itwaGqsfnnksdeldggeeeetvvvvs 88 
                      aYa+y+++++++v+l+N+++y+s++  r + t+ ++gl   +k v +krLtap +++  +       t++Gqsf+n +++l+g+e+ e++ vv+
       KKY21687.1 238 AYAIYSESNPVKVLLYNSDYYASGT--RTNHTFIFTGLH--SKAVAAKRLTAPYATS--RqdegenPTIGGQSFGNLTCGLQGEETWEKIMVVE 325
                      8****88**************7665..9*******9998..57**********6233..2236799**************************** PP

  Glyco_hydro_79C  89 dGkvtvdVpaseavL 103
                      +G++++ V asea+L
       KKY21687.1 326 GGEARFVVGASEALL 340
                      *************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2501.54
//
Query:       KKY21688.1  [L=381]
Description: putative alpha-ketoglutarate-dependent taurine dioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-50  170.7   0.3    6.1e-50  170.5   0.3    1.1  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.5   0.3   3.4e-54   6.1e-50       2     267 ..      75     347 ..      74     348 .. 0.88

  Alignments for each domain:
  == domain 1  score: 170.5 bits;  conditional E-value: 3.4e-54
        TauD   2 vkpltpkfgae..gvdlsdleslddelkeelrellaeygvvvfrgfpl...speqqlefarrfG..plygtpgrgtntkygevldvssvyesadianla 93 
                 v +l+p++g+e  gv+ls+   l++e  +el  + a++g++vfr++++     e+q+++ r fG   ++g+  +++    +++ +++s+++   ++   
  KKY21688.1  75 VSDLSPHVGTEieGVQLSQ---LSSEGLDELALMAAKRGALVFRNQDFrdiGFEAQKKIVRHFGplHIHGWAPHPSAGSDEHMVIYDSKEDLRVRRS-- 168
                 789********77777777...99999*******************99989*************444445555555555555555554333333333.. PP

        TauD  94 yttll...wHtDlsylesppgiqlLhcleapa.tGGetpfvDgraaynaLpeelpellegltavrvyyhyrggglrteqelpavdkhprtghpvvrthp 188
                   ++    wH+D+s + +ppg+++ ++le pa  GG+t+++++++ y++L+++ +++legltav+++ + + ++++   +   ++++ +++hpvv +hp
  KKY21688.1 169 WRGRSpiqWHSDQSPEVQPPGTTFICMLESPAmAGGDTLISSSVQQYKSLSPRFRKRLEGLTAVHSNNDGVSQEQKNGSNAVMRRSELNQEHPVVIVHP 267
                 22222567**********************999***************************************999999999****************** PP

        TauD 189 vltgrkallvnppfatrieglgtpeskelldaleelledp.eftyrfqwqeGdlvifdNrrvlHgrt.afdegeeRhllrc 267
                 v t +kal+vnp +++ri g +++es+ ll++l++++++  +f++r++ ++G ++i+d r + H+ t ++++ge+Rh  r+
  KKY21688.1 268 V-TKEKALYVNPVYTKRIIGYDEEESQYLLNFLFDHIAKRaDFQCRVRYEPGTVLIWDQRVTTHSQTlDYPAGERRHAFRL 347
                 8.*************************************66*****************************99999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 2520.31
//
Query:       KKY21689.1  [L=554]
Description: putative acetamidase regulatory protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-08   34.4   0.0    2.4e-08   33.3   0.0    1.5  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.4e-12   2.4e-08       2     109 ..      95     190 ..      94     198 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.4e-12
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLl 98 
                     +f+ ++p fp+++++ f++++  +++ +++  s lll ail +Ga+ s+s   ++  +l+s       f+ ra+il+  d + ++s+ +i+q+ l
    KKY21689.1  95 RAYFEKVNPGFPVVDEDVFMSQY--KSRDPNNPPSLLLLQAILLVGAHVSKSGLERE--TLKS------MFFRRAKILF--DTRFERSRDTIVQTAL 179
                   57*********************..555555556666669**************999..3333......3677******..666666666******* PP

  Fungal_trans  99 llelyektssd 109
                   l+ + + + +d
    KKY21689.1 180 LMTWHSDGPED 190
                   ***99877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3633.73
//
Query:       KKY21690.1  [L=330]
Description: putative dihydrodipicolinate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-33  114.9   0.0    8.8e-33  113.2   0.0    1.6  1  DHDPS     Dihydrodipicolinate synthetase family


Domain annotation for each model (and alignments):
>> DHDPS  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.2   0.0   4.9e-37   8.8e-33       3     280 ..       9     312 ..       7     317 .. 0.77

  Alignments for each domain:
  == domain 1  score: 113.2 bits;  conditional E-value: 4.9e-37
                 SEEEEE----B-TTSSB-HHHHHHHHHHHHHCT-SEEEESSCCCTGGGS-HHHHHHHHHHHHHHHTT....SSEEEEE---SSHHHHHHHHHCCCCCT- CS
       DHDPS   3 sgiitalvtpfdedgkldkealrklieflinkgvdglvvaGttGEsatlsteekeqlveiaveaakg....ripviagvGsnstseaiklakkaeeaGa 97 
                 +gi t+l t fd + +ld ea +k + f   +g+  + +aG+ GE++ ls+ee+  l++ a++a +     +ipv+ g+G  st+e+i +a+k + aGa
  KKY21690.1   9 KGIYTPLPTFFDDNEELDVEAFKKHVVFTASAGTIPV-IAGSMGEAPHLSHEERTILIHAARTALDShdlsSIPVVVGAGTSSTRESIIIAQKCASAGA 106
                 79*******************************9775.69************************99633337*************************** PP

                 SEEEEE--.-SS---HHH...HHHHHHHHHHCHSS-EEEEE-HHH.HSHHHHHHHHHHHHT.STTEEEEEE-SS-CTHHHHHHCCCST.....T..... CS
       DHDPS  98 dgvlavtP.YYnkpsqeg...lyqhfkaiieatdlpvilYnvpsr.tgadlspetvkrLae.lenivgvKeavgdleevikikkevgk.....d..... 180
                 d+v++++P YY  p + +   + ++f  i++a   pv++Yn+p+  +g dl  + +   ++  +ni g+K +  ++ ++++i + +++     +     
  KKY21690.1 107 DCVMVIPPgYYAGPLKSDilaVRNFFVDIANASPIPVMMYNFPGVsSGIDLDSDLIIDVVKsAPNICGIKLTCASVGKLTRITAVTDDpefqaQyprkd 205
                 ********5665444444222689******9999*********96369************99********99888855555544332211111011122 PP

                 ....SEEEES-GGGHHHHHHTT-SEEEESCHHCHHHHHHHHHHHHHTT-HHHH.HHHHHHHHHHH...HHCCCCSCCHHHHHHHH.CTTSSSBB.--TT CS
       DHDPS 181 ....lviysGddelllsalslGadGvisvtsniagermrqlikalkeGdlaea.aelnekllpli...kilfaepnvilvktale.llGlvveatlrkP 270
                     +++  G+ ++ll+ +  Ga G+is   n+a++   +l ++  e +++   ++  +kl+ li   + ++a+  + ++k  l+   G  +++  r+P
  KKY21690.1 206 prtpFMVIDGYIDILLPSMASGAAGAISGLPNFAPKTCVKLWELCLEAETDGEkKKEAKKLQALIsqaDGYAAKIGIPGMKKLLNrKFGYGSNP--RRP 302
                 23339***********************************998877655554324444555555511145566644445555554145665555..999 PP

                 S--S-HHHHH CS
       DHDPS 271 ltpleeeeke 280
                 l p ++++ +
  KKY21690.1 303 LRPFSDDQGN 312
                 9999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2226.71
//
Query:       KKY21691.1  [L=328]
Description: hypothetical protein UCRPC4_g03458 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-83  279.7   0.4    1.9e-83  279.4   0.4    1.1  1  Glyco_hydro_114  Glycoside-hydrolase family GH114


Domain annotation for each model (and alignments):
>> Glyco_hydro_114  Glycoside-hydrolase family GH114
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.4   0.4     1e-87   1.9e-83       1     232 []      92     324 ..      92     324 .. 0.97

  Alignments for each domain:
  == domain 1  score: 279.4 bits;  conditional E-value: 1e-87
  Glyco_hydro_114   1 twqyqlqgpletspdavdvydiDlfdtsaatiaalkakgkkviCYfsaGevedwrpdaddfnpasvlgkkldgWpgerwldirtaakrsskvrs 94 
                      tw+  l+ + + ++ ++ v+diDl++++a+ti++l+++g+kviCYfsaG++e+wrpd+d+f   s+lg++ldgWpge+wl+++     ss+vr 
       KKY21691.1  92 TWDLILEFAFNHTVPNIGVWDIDLYANDADTIQSLQSNGSKVICYFSAGSYENWRPDKDNF-TTSDLGSPLDGWPGEYWLNVS-----SSNVRT 179
                      7999999889988666*********************************************.999******************.....99**** PP

  Glyco_hydro_114  95 imkaridlaaakGfdgvepDnvDsyesndtgflltaadqlayvkflaaeaharglaiglknageliselvdafdfavnEecaeyseCdtyepfi 188
                      im +r+dla+ kG++gv+pDnvD+y +nd+g++lt++d+++y++fla+ ah+r+l+iglknag +++ ++d ++++v+E+c++y+eCd y pfi
       KKY21691.1 180 IMLSRLDLAVVKGCNGVDPDNVDGY-DNDNGLDLTEDDAIQYMEFLADAAHSRNLSIGLKNAGAIVPYIIDIMEWSVQEQCVKYDECDLYMPFI 272
                      *************************.8******************************************************************* PP

  Glyco_hydro_114 189 aagkpVfhiEYp..........vsaaedaaacaaasraagfstvvkdldLddkw 232
                      ++gkpVfh+EYp          vsa++++ +ca +s+a+gfst++k++ L d+w
       KKY21691.1 273 EQGKPVFHVEYPkgddtnnnddVSASTKELLCA-DSQAQGFSTILKNMLL-DNW 324
                      *******************99999999999999.9*************99.555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2597.15
//
Query:       KKY21692.1  [L=102]
Description: hypothetical protein UCRPC4_g03459 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 705.53
//
Query:       KKY21693.1  [L=547]
Description: putative extracellular serine-rich [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.083   12.8   0.0       0.17   11.8   0.0    1.5  1  Polysacc_deac_1  Polysaccharide deacetylase


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.3e-06      0.17      63     121 ..     283     347 ..     275     350 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.3e-06
                      E--SS--EGGGSHHHHHHHHHHHHHHHHHHH...HS-.---EEE-GGGE..E-HHHHHHHHHTT. CS
  Polysacc_deac_1  63 nHtinhsnlkrlseeevrreierakdalrka...lgr.eprlfryPygs..asatvlevarelgf 121
                       Ht++h  l++ + +++ +ei+ ++  l ++    g+ +++ + +P     ++ +v+++  ++g+
       KKY21693.1 283 THTFTHLELNNATYSDALKEIQFNQAWLSQVglaSGKfTSNGMIPPAITgfHNGDVIRAWHDAGL 347
                      5****************************997666777777788885332267777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.18s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 4230.88
//
Query:       KKY21694.1  [L=256]
Description: putative 8-oxoguanine dna glycosylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-09   35.7   0.0    1.5e-08   35.1   0.0    1.4  1  HhH-GPD   HhH-GPD superfamily base excision DNA repair protei


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   8.3e-13   1.5e-08      18      99 ..       2     154 ..       1     170 [. 0.89

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 8.3e-13
                 HHHHHHHHS.............HCSHHHHHHSH.HHHHHHHHTTSTTHHHHHHHHHHHHHHHH.................................... CS
                 xxxxxxxxx.............xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................... RF
     HhH-GPD  18 ierlferfg.............fptpedladad.eekLrelirelGfyrrKakyikelArilv.................................... 66 
                 +e+l+  +g             fp p +l++   e++Lrel    Gf+ ++akyi ++A i++                                    
  KKY21694.1   2 VEKLCLHYGpfvahldgyayhdFPIPAALTGKGvESHLREL----GFG-YRAKYIYQTALIVAndrepgwldslrnpespvfgmkampagkmqpegreg 95 
                 56777777777777778888889********999*******....***.************************************************** PP

                 .............................S-SSS--TTSHHHHHHHHHHTTSSSSTTHHHHH CS
                 .............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  67 .............................gkpdvlivvDvhvrrilkrlrsikekktkkkve 99 
                                              g   ++++vD+hv++i++r +   + k+ + ++
  KKY21694.1  96 yrkahdgllnlqgcgpkvadcvclmglgwG---EAVPVDTHVWQIAQRDYKFGRGKHSSLTK 154
                 *************************99555...69999***********9887765555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1854.74
//
Query:       KKY21695.1  [L=458]
Description: putative splicing factor u2af large subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-33  112.2   0.2    1.4e-14   53.6   0.0    3.9  3  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    4.4e-06   26.5   0.0      0.088   12.7   0.0    3.5  3  RRM_occluded  Occluded RNA-recognition motif
  ------ inclusion threshold ------
       0.03   14.3   0.0       0.16   12.0   0.0    2.2  3  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.5e-08   0.00015       1      64 [.     107     174 ..     107     178 .. 0.81
   2 !   53.6   0.0   2.3e-18   1.4e-14       2      70 .]     230     299 ..     229     299 .. 0.98
   3 !   32.3   0.0   1.1e-11   6.4e-08      12      69 ..     382     443 ..     381     444 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.5e-08
                 EEEESETTTSSHHHHHHHHHT.TSCEEEEEEEEE....TTTSEEEEEEEEESSHHHHHHHHHHHTTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFsk.fGpiksiklvrd....etgkskgfafVeFeskedAekAlealngkkl 64 
                 lfV n+p++v+ee L ++F+   ++ + ++ v      +  +   +a VeF++++dA+ A + ++g+ +
  KKY21695.1 107 LFVYNIPHSVNEESLVAFFNLqMNGLNAVDTVDPcisaSMSTDGTYALVEFKNPSDATLAQA-FDGMDM 174
                 8******************85566666666666565566666678***************98.888765 PP

  == domain 2  score: 53.6 bits;  conditional E-value: 2.3e-18
                 EEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   2 fVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                  ++n+pp+++ee++ el+  fG+ k ++lv+d +t+ s+g+af+e++++ + + A+e ln+++lg+r+lk
  KKY21695.1 230 SISNIPPYLNEEQITELLVSFGELKAFTLVKDsSTEESRGIAFCEYADPAATTIAVEGLNEMELGDRKLK 299
                 699****************************************************************986 PP

  == domain 3  score: 32.3 bits;  conditional E-value: 1.1e-11
                 HHHHHHHHHTTSCEEEEEEEEE..TTTSEEEEE..EEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  12 eeeLkelFskfGpiksiklvrd..etgkskgfa..fVeFeskedAekAlealngkklggrel 69 
                 +e++ e  +++G++ +ik++r     ++s g++  +V+F+s ++A+kAl+al g+k+ +r++
  KKY21695.1 382 KEDILEECQNYGRVLEIKIPRPsgGSRQSAGVGkiYVKFDSNDSAKKALQALAGRKFADRTV 443
                 5899999**************988666777666669***********************997 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0012       7.2       4      52 ..     107     164 ..     104     177 .. 0.85
   2 !   12.7   0.0   1.5e-05     0.088       2      70 ..     227     300 ..     226     303 .. 0.85
   3 ?    3.0   0.0     0.016        96      43      70 ..     418     445 ..     415     450 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0012
  RRM_occluded   4 isllplsDtvnkariralveek.........egeikkivLvpdheGAivefkdekiag 52 
                   + +++++  vn++ + a+++ +          ++     + +d   A+vefk+ ++a 
    KKY21695.1 107 LFVYNIPHSVNEESLVAFFNLQmnglnavdtVDPCISASMSTDGTYALVEFKNPSDAT 164
                   569****************999999998875588888899999999*******99986 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.5e-05
  RRM_occluded   2 rtisllplsDtvnkariralveekegeikkivLvpdheG......AivefkdekiagkasLaLdgsefegkklrc 70 
                   + is+ +++   n+++i++l+ +  ge+k   Lv d +       A+ e++d +++  a+  L+ +e+ ++kl++
    KKY21695.1 227 NKISISNIPPYLNEEQITELLVSF-GELKAFTLVKDSSTeesrgiAFCEYADPAATTIAVEGLNEMELGDRKLKV 300
                   569*********************.99999999988653333335999999999999999999999999999986 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.016
  RRM_occluded  43 vefkdekiagkasLaLdgsefegkklrc 70 
                   v+f+++ +a ka+ aL g +f+++++ +
    KKY21695.1 418 VKFDSNDSAKKALQALAGRKFADRTVVT 445
                   8999999***************998765 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.7     1e+04      39      50 ..     153     164 ..     150     166 .. 0.80
   2 ?   -1.8   0.0      0.55   3.3e+03       2       8 ..     281     287 ..     249     289 .. 0.78
   3 ?   12.0   0.0   2.7e-05      0.16      22      53 .]     390     430 ..     378     430 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.7
  Nup35_RRM_2  39 myvkfesekdae 50 
                  + v+f+++ da 
   KKY21695.1 153 ALVEFKNPSDAT 164
                  6799****9996 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.55
  Nup35_RRM_2   2 twvaVsG 8  
                  t++aV+G
   KKY21695.1 281 TTIAVEG 287
                  6677776 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 2.7e-05
  Nup35_RRM_2  22 asfGeIvkhyvp.........kevsvmyvkfesekdaekAL 53 
                  +++G++ ++ +p          +v  +yvkf s ++a+kAL
   KKY21695.1 390 QNYGRVLEIKIPrpsggsrqsAGVGKIYVKFDSNDSAKKAL 430
                  689**************999977899**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3183.80
//
Query:       KKY21696.1  [L=352]
Description: putative ubiquitin-protein ligase e3 c [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-35  122.6   0.0    1.5e-23   83.8   0.0    2.1  2  Methyltransf_28  Putative S-adenosyl-L-methionine-dependent m
  ------ inclusion threshold ------
      0.015   15.6   0.3      0.031   14.6   0.3    1.4  1  CENP-B_dimeris   Centromere protein B dimerisation domain
       0.17   11.7   0.0       0.76    9.6   0.0    1.9  2  PRMT5            PRMT5 arginine-N-methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_28  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.0   2.5e-27   1.5e-23       2     123 ..      85     199 ..      84     226 .. 0.86
   2 !   37.0   0.0   4.5e-13   2.7e-09     175     255 ..     224     309 ..     219     316 .. 0.88

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 2.5e-27
  Methyltransf_28   2 laiwlleewqalgrpskklrliElGpGkGtLmadvLrtlrkflpefyealeyhlvEaSpqlrerQk..nrLkekakevkkestvkslgvkveWl 93 
                      +a++l+++++ +  p  +l ++E+G+G+Gt+m ++++++r+f+pe+y++++y ++E+S++l+  Q+  ++L ++a++v  e+ + s+ +   W 
       KKY21696.1  85 IARYLVANYKLTVFPYDDLIIYEMGAGNGTMMRNIMDYIRDFEPEVYQRTKYRIIEISSSLAGLQEltKKLGGHAGHV--EILNRSVFD---WN 173
                      9***************9*********************************************8885337788877666..588888888...87 PP

  Methyltransf_28  94 eelkeipeetgfilanEffDaLPihqfert 123
                      e ++     ++f+la E+fD+++++ ++++
       KKY21696.1 174 EYVS----APCFFLALEVFDNFAHDEIRYN 199
                      7653....89****************9965 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 4.5e-13
  Methyltransf_28 175 srieispeaeallediaerlakegGaaLiiDYge.ssse..pngtL.rairkhklv...dpleepGevDltadvDFtalaeaaeeasg 255
                      +  +i++++++++  ++++++   + +   D+++ +s +   n+++ +  +++k v    p++++G++D++++ DFt ++ ++++++g
       KKY21696.1 224 QPEFIPTRLMQFFDVLQKYFPA--HKLVASDFNKlPSPIkgINAPIvQTRYQRKNVtvtTPFVHQGYFDIFFPSDFTVMEDIYRAITG 309
                      5679******************..************999999999985556666666977***********************99987 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.3   5.2e-06     0.031      21      69 ..      56     104 ..      39     108 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.2e-06
  CENP-B_dimeris  21 eeeeedeededeeddedddevpvpsfgeamayfamvkryltsfpiddrv 69 
                     ++ ++++ d++ +      e+  p +gea+a + + +  lt fp dd +
      KKY21696.1  56 DKIDDENPDDNRQLWHTPTELFRPYYGEAIARYLVANYKLTVFPYDDLI 104
                     22222223333344466789999**********999999*******975 PP

>> PRMT5  PRMT5 arginine-N-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00013      0.76      42     134 ..      80     174 ..      77     196 .. 0.72
   2 ?   -0.4   0.0      0.15   9.1e+02      28      45 ..     186     203 ..     183     207 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00013
                 HHHHHHHHHHHHHCTCCGTCC.-EEEEEEES-TTSHHHHHHHHHHHHHCCC.....EEEEEEEES-HHHHHHHHHHHHHHTTCCGCEEEES-CCCCCH CS
       PRMT5  42 lYeeAiekalsdlkkekkkksekklvilvvGaGRGplvdralkaleetkvt.....kvkivavEKnpnavvtLqkkvneekWeekveviksdmrelka 134
                  Y eAi+++l+ + k +     ++l+i+ +GaG G +++++++ ++  + +     k++i+ +    + +  L+kk+     + +ve++++ + ++++
  KKY21696.1  80 YYGEAIARYLVANYKLTVFPY-DDLIIYEMGAGNGTMMRNIMDYIRDFEPEvyqrtKYRIIEISSSLAGLQELTKKL--GGHAGHVEILNRSVFDWNE 174
                 5999*****999888876666.89******************99987763333333666666665555566665553..3345577777777777765 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.15
                 HHHHHHCC-CCHHHHHHH CS
       PRMT5  28 atYevFEkdkvKYelYee 45 
                 +++++F +d+++Y+ Y e
  KKY21696.1 186 EVFDNFAHDEIRYNPYTE 203
                 68999*********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2527.26
//
Query:       KKY21697.1  [L=359]
Description: putative cysteine synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-62  210.8   0.1    3.2e-62  210.6   0.1    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.6   0.1   1.8e-66   3.2e-62       2     294 .]       8     324 ..       7     324 .. 0.91

  Alignments for each domain:
  == domain 1  score: 210.6 bits;  conditional E-value: 1.8e-66
                 GGCSSS--EEEECCTCCCCCCEEEEEEGGGS.TTSBTTHHHHHHHHHHHHTT.....TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHH CS
        PALP   2 tlgigpTPlvrlprlskelgvplflKlEsln.ptgSfKdRgaeyllarlkeg.....tgaktvveassGNhgralAaaaallGlkvtivvpadaspekv 94 
                 +  ig+TPl ++++ls+++g+++++K E+ln  +gS KdR a +++++++++      +++t+ e++ G +g++lA  +++ G+ ++i++p+d   ek 
  KKY21697.1   8 ESCIGNTPLFKIKSLSDATGCEIYAKAEFLNgAGGSPKDRVALSIIQTAEREglltpHSGDTIYEGTVGSTGISLATLCRARGYLAHICMPSDQAHEKS 106
                 6789***************************66***************7777788888***************************************** PP

                 HHHHHTT-EEEEE......CCHHHHHHHHHHHHHHH.......STTCEE--TTTSHHHHHH.HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHH CS
        PALP  95 allrllGaevvev......ggdydeavaaaaelaae.......gegaylvsqfdnptvieg.ygtiglEileqlggkpdavvvpvGgGgliaGiaaglk 179
                 +ll  lGa v +v      +   ++ v++a++la +       ++  ++++qf+n++++ + y+ +g+Eil+q+ gk+da+v+++G+Gg+i+G+a +lk
  KKY21697.1 107 DLLLKLGAVVDRVtpapivD--QEHFVNRARNLAIQhtddpnrKGRGFFANQFENEANWRAhYEGTGPEILKQCSGKVDAFVAGAGTGGTISGVALYLK 203
                 **********9997555442..3344444555555566669999999**************************************************** PP

                 HHSTT-EEEEEEECTTCGGTTCC.........S..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHH CS
        PALP 180 errpdvrvigvepegsdalarsl.........ragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaa 269
                 ++ p  +v+ ++p+gs  +++           r+g r + +v dti++g++    s+ +fe  + l+d++  ++d++a++++r+l +++gi+++ ssa+
  KKY21697.1 204 SQIPGMKVVLADPQGSGLYNKVKhgvmfhsleREGTRRRHQV-DTIVEGIGLT-RSTANFEKGRPLIDDAEKITDQQAMAMARWLVEKDGIFIGSSSAV 300
                 **************9998888886667777766666666665.**********.********************************************* PP

                 HHHHHHHHHHHCCTTCEEEEEEE-B CS
        PALP 270 alaalklreagelkegdrvvviltg 294
                 +  a+  r a +l++g +vv+il++
  KKY21697.1 301 NCTAA-TRAALRLGPGHSVVTILCD 324
                 *****.*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2381.94
//
Query:       KKY21698.1  [L=619]
Description: putative myb-like dna-binding domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-22   77.1   0.8    2.4e-21   75.2   0.8    2.1  1  Scm3          Centromere protein Scm3
  ------ inclusion threshold ------
      0.019   14.6   0.1      0.038   13.7   0.1    1.4  1  Sigma70_r4_2  Sigma-70, region 4
       0.19   11.6   0.5       0.39   10.6   0.5    1.5  1  DUF3781       Protein of unknown function (DUF3781)
       0.19   11.9   0.0       0.35   11.0   0.0    1.4  1  DUP           DUP family
       0.64    9.2   3.3       0.17   11.1   0.3    1.5  2  DUF4800       Domain of unknown function (DUF4800)


Domain annotation for each model (and alignments):
>> Scm3  Centromere protein Scm3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.8   6.6e-25   2.4e-21       2      54 .]      36      87 ..      35      87 .. 0.96

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 6.6e-25
                HHHHHHHHHHHHHHHHHHHHHHHSG..GGSS--B-TTT-SB-XXXXXXXXXXX CS
        Scm3  2 allreesderlkkrwesifeKYeridfedqgDEIDlatgeivvDnGhlrelrd 54
                a +r ++d+rlk+rwesif+KYer df+d++DEID++tgei+v+ Ghl +++d
  KKY21698.1 36 AVARDRNDRRLKSRWESIFDKYER-DFSDVADEIDIRTGEIIVNKGHLASMQD 87
                67899*******************.**************************97 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.1e-05     0.038      17      49 ..     477     509 ..     477     512 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
                   HHHHHHHTS---HHHHHHHHT--HHHHHHHHHH CS
  Sigma70_r4_2  17 eifllryleglsykEIAellgisegtVksrlsR 49 
                   ei+  ++le+l  kEIA++l+ s + V++ +++
    KKY21698.1 477 EIVKYKELEELGFKEIAKKLNASLKLVYNTYYQ 509
                   688999**********************99986 PP

>> DUF3781  Protein of unknown function (DUF3781)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.5   0.00011      0.39       9      61 ..     484     538 ..     476     541 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
     DUF3781   9 ttelgieRIkknLslseddv.veyckeiildk.nakiekkGKnyYveakniilTv 61 
                  +elg++ I k+L+ s + v  +y + ++ +k n+++  +GK + ++++n il +
  KKY21698.1 484 LEELGFKEIAKKLNASLKLVyNTYYQYRVTQKtNEELAAEGKAWSNDEDNLILEI 538
                 579***********5544441568888888887***************9999866 PP

>> DUP  DUP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   9.7e-05      0.35      24      69 ..     456     500 ..     436     517 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.7e-05
         DUP  24 qnlrafsksvsdekfkikllseiikekpavdakeWdtIaknmNqYL 69 
                 + l  ++ks ++ ++ +kl+ ei+k k+  +  + ++Iak++N  L
  KKY21698.1 456 VYLNELCKSRQMGECDLKLFLEIVKYKE-LEELGFKEIAKKLNASL 500
                 45667899999*****************.899***********865 PP

>> DUF4800  Domain of unknown function (DUF4800)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.2       2.3   8.1e+03     146     178 ..      85     117 ..      79     123 .. 0.75
   2 ?   11.1   0.3   4.7e-05      0.17     101     215 ..     416     532 ..     406     537 .. 0.78

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 2.3
     DUF4800 146 hkrdkergesklkfqelivepfkkrarsEnkRy 178
                 ++ ++++g s+++ +    +  ++  r E +R 
  KKY21698.1  85 MQDERDNGASRSRQKTSSEDHDSQDNRYEGRRL 117
                 556788888888888887777777777777775 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 4.7e-05
     DUF4800 101 eewkafiekqvqPtmkqyeldtfgksheemslfwkscyealmvnshkrdkergesklkfqelivepfkkrarsEnkRyssvlkqlasqhaavlr...qW 196
                 eew+  ie+++ P+ kq++++  ++    + +  +  ++ +  n   + ++ ge+ lk+   ++e + k ++ E+  ++++ k+l++  + v++   q+
  KKY21698.1 416 EEWQYNIEHNICPYCKQHKIHLTQHFRLMVDKGADGVHDVVYLNELCKSRQMGECDLKL---FLEIV-KYKELEELGFKEIAKKLNASLKLVYNtyyQY 510
                 79*************************9999*************************996...44433.4556777888888888877766554311155 PP

     DUF4800 197 k...alkrlltsergaWaerkq 215
                 +   +++  l++e  aW++ + 
  KKY21698.1 511 RvtqKTNEELAAEGKAWSNDED 532
                 5111445569999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.49
# Mc/sec: 3767.51
//
Query:       KKY21699.1  [L=505]
Description: putative autophagy protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-66  224.0   0.0    1.9e-66  223.5   0.0    1.2  1  APG6        Apg6 BARA domain
    6.2e-34  117.4  11.0    9.1e-34  116.9  11.0    1.2  1  APG6_N      Apg6 coiled-coil region
     0.0029   17.3   6.7     0.0045   16.7   6.7    1.2  1  YkyA        Putative cell-wall binding lipoprotein
  ------ inclusion threshold ------
      0.012   16.0   1.6          5    7.5   0.4    2.6  2  HCMV_UL139  Human Cytomegalovirus UL139 protein
      0.036   12.6   1.6      0.049   12.2   1.6    1.1  1  FUSC        Fusaric acid resistance protein family
      0.059   14.1   1.2       0.16   12.7   1.2    1.8  1  FIVAR       FIVAR domain
       0.08   12.8   4.9       0.12   12.2   4.9    1.3  1  KASH_CCD    Coiled-coil region of CCDC155 or KASH
       0.24    9.9   0.7       0.31    9.6   0.7    1.1  1  FapA        Flagellar Assembly Protein A
        0.5   10.1   9.6       0.95    9.2   9.6    1.4  1  ERM         Ezrin/radixin/moesin family
       0.68   10.0   5.1        1.3    9.1   5.1    1.3  1  UPF0242     Uncharacterised protein family (UPF0242) N-termin
        3.5    7.0   9.2         12    5.3   0.6    2.7  3  DUF4349     Domain of unknown function (DUF4349)
        8.3    6.3   7.6        3.4    7.5   1.3    2.5  2  DivIC       Septum formation initiator


Domain annotation for each model (and alignments):
>> APG6  Apg6 BARA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.5   0.0   1.3e-69   1.9e-66       1     179 []     295     497 ..     295     497 .. 0.96

  Alignments for each domain:
  == domain 1  score: 223.5 bits;  conditional E-value: 1.3e-69
        APG6   1 LrktnvyndaFkIshdgkfgtInglrLGrlpsekvewsEinAAlGqtvlLLatiaeklnlkfqeyklvplGstSkiekleeksee.............. 85 
                 L++tnvynd+F+I hdg fgtInglrLGrlp+++vewsEinAA+Gqt+lLLatiaekl+++fq+y+l+p+GstS+iekle  +++              
  KKY21699.1 295 LSRTNVYNDTFCIGHDGFFGTINGLRLGRLPTQNVEWSEINAAWGQTLLLLATIAEKLGFTFQGYRLKPMGSTSHIEKLEYPQQSpeesrqqagsggrl 393
                 789*****************************************************************************9999999************ PP

        APG6  86 ............vlelyssgelklgllfserkfDkamvafleclkqlaekvekedkelelPYkikkdkdkigd..lsikl....qfneeeeWtkAlkll 166
                             +l+l+ssg+++lg+l+++r+fD++mvaflecl ql++ v++      lPY ik d  kigd  lsikl    +  ++e+WtkA+k+ 
  KKY21699.1 394 ppnvavgspkvtSLDLFSSGDVPLGRLIHHRRFDAGMVAFLECLAQLGTAVDR------LPYPIKGD--KIGDppLSIKLgagfSGPSDENWTKACKYA 484
                 *************************9999**********************86......9****888..****998888866545567*********** PP

        APG6 167 Ltnlkwllawvss 179
                 Lt++k+lla++s+
  KKY21699.1 485 LTCCKYLLAHTSN 497
                 **********986 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.9  11.0   6.1e-37   9.1e-34       1     133 []     164     292 ..     164     292 .. 0.99

  Alignments for each domain:
  == domain 1  score: 116.9 bits;  conditional E-value: 6.1e-37
      APG6_N   1 PlCeeCtdlLleeldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeee 99 
                 P+C+eCtd+Ll  l+++l++++kerdaY +flk+l+++ ++ee    e++++e+ l+k +++e++++e L +le+e++ l+ae+aaleee++al++ee+
  KKY21699.1 164 PICTECTDMLLVSLQSRLQASTKERDAYIQFLKTLNNSIPTEE----EVASAENALQKAKEQEAKAFEDLIALEREKAGLDAEIAALEEESQALDKEEA 258
                 9**************************************9987....**************************************************** PP

      APG6_N 100 rfwreynelqlelleleeeldsleaqyehaqnql 133
                 +fw ++n++    l+ +  +d+l+a+y+h++ ql
  KKY21699.1 259 AFWASRNAFTERILDIQTSRDALDAKYAHDTLQL 292
                 ******************************9887 PP

>> YkyA  Putative cell-wall binding lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   6.7     3e-06    0.0045       6      93 ..     194     276 ..     190     302 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3e-06
        YkyA   6 iyealeeavelEkefeeqqekLtelekkeqelyeeiielgmdefdkikklsdealenveeReellekekesieeakeefekikeeiee 93 
                 + ++l++++  E+e++++ + L++++++e + +e++i+l+ ++     +  d  ++ +ee  + l+ke++++ +++++f++   +i+ 
  KKY21699.1 194 FLKTLNNSIPTEEEVASAENALQKAKEQEAKAFEDLIALEREK-----AGLDAEIAALEEESQALDKEEAAFWASRNAFTERILDIQT 276
                 6789**********************************99877.....99999999***********************986655555 PP

>> HCMV_UL139  Human Cytomegalovirus UL139 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.4    0.0034         5      47      99 ..     175     227 ..     169     235 .. 0.93
   2 ?    6.8   0.0    0.0056       8.4      31      68 ..     258     293 ..     251     320 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0034
  HCMV_UL139  47 lslrseidaldakyvaisrdlrslkgeveeaerkeeereryyeakrkemeefl 99 
                 +sl+s ++a    ++a+++ l++l   ++ +e+ +   ++  +ak +e ++f 
  KKY21699.1 175 VSLQSRLQASTKERDAYIQFLKTLNNSIPTEEEVASAENALQKAKEQEAKAFE 227
                 6899*********************************************9997 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0056
  HCMV_UL139  31 rcllLerkiadlnsrilslrseidaldakyvaisrdlr 68 
                   ++  r+++    ril +++  daldaky  +  +l 
  KKY21699.1 258 AAFWASRNAF--TERILDIQTSRDALDAKYAHDTLQLE 293
                 5799999997..99*****************9999984 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.6   3.3e-05     0.049     224     340 ..     177     301 ..     156     315 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.3e-05
        FUSC 224 llsrmlallallsslarllarlraeeaaavpe..laallaelaal..eaaaaaealeaalaalrarlralrraleadadtaalllarlaellaelaqll 318
                 l+sr++a +   +++ + l++l+ +  ++++    ++ l+++++   +a ++  ale + a l+a+++al+++ +a    +a+++a+   + ++ ++++
  KKY21699.1 177 LQSRLQASTKERDAYIQFLKTLNNSIPTEEEVasAENALQKAKEQeaKAFEDLIALEREKAGLDAEIAALEEESQALDKEEAAFWASRNAFTERILDIQ 275
                 5666666666666666777777766655543355777777777754444444557888999999999999999999999999***************** PP

        FUSC 319 aslraleaaiaa....arraerlarh 340
                 +s +al+a  a+     +r  r+  +
  KKY21699.1 276 TSRDALDAKYAHdtlqLERLSRTNVY 301
                 ******99888765554455555555 PP

>> FIVAR  FIVAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.2   0.00011      0.16      41      69 ..     196     221 ..     181     223 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
                 HHC...TSTTTTCCCHHHHHHHHHHHHHH CS
       FIVAR  41 ailnktnnpnatveqVnqalanlnqaina 69 
                 ++l   nn+ +t+e+V  a ++l++a+ +
  KKY21699.1 196 KTL---NNSIPTEEEVASAENALQKAKEQ 221
                 566...********************976 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   4.9   8.2e-05      0.12      66     132 ..     205     271 ..     178     298 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.2e-05
    KASH_CCD  66 eeEleelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqeenikllaekdelkkklkeLlkek 132
                 eeE++ + + +++ +E++a++      le+e+  L a+i++L+ee + l  e+ +     +  ++ +
  KKY21699.1 205 EEEVASAENALQKAKEQEAKAFEDLIALEREKAGLDAEIAALEEESQALDKEEAAFWASRNAFTERI 271
                 89********************************************999988776655555555555 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.7   0.00021      0.31     334     433 ..     176     276 ..     131     294 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00021
        FapA 334 elkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeea.kikvnkeiypgvkiki 431
                 +l+++l++  +e  ++ + l++l+++i   ++ +  ++  ++ keq +k+ e++++l++e + l++e+++l+ee +   +e+    +++ ++ +  + i
  KKY21699.1 176 SLQSRLQASTKERDAYIQFLKTLNNSIPTEEEVASAENALQKAKEQEAKAFEDLIALEREKAGLDAEIAALEEESQALDKEEaAFWASRNAFTERILDI 274
                 455556666666666666666666666666665566666666666777777777777777777777777777776666333335666666666666665 PP

        FapA 432 gk 433
                 ++
  KKY21699.1 275 QT 276
                 55 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   9.6   0.00064      0.95       4      95 ..     205     296 ..     202     302 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00064
         ERM   4 erekreleerLkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarle 95 
                 e e +  e+ L++ +e+ +ka e+L   e++   L+ +   +eee++ L++++a++ +  +++ e+  + + ++++l +k ++ +l+++rl 
  KKY21699.1 205 EEEVASAENALQKAKEQEAKAFEDLIALEREKAGLDAEIAALEEESQALDKEEAAFWASRNAFTERILDIQTSRDALDAKYAHDTLQLERLS 296
                 56667788899999999999999999999999999999999999999999999999999999999999999999999999998888888876 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   5.1   0.00084       1.3      65     156 ..     192     297 ..     162     302 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00084
     UPF0242  65 l...........ekskleekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiae...dfeelkleleeqLaekqe 149
                 +            ++++++ e+ l++ +e+ ++  e l  l+ e+  L  e++a eee++ l +e++ +    +a  e   d++ ++ +l+++ a+ ++
  KKY21699.1 192 IqflktlnnsipTEEEVASAENALQKAKEQEAKAFEDLIALEREKAGLDAEIAALEEESQALDKEEAAFWASRNAFTErilDIQTSRDALDAKYAHDTL 290
                 033443333335455566666666666667777777888888899999999999999999999999999888888777899999999999999999999 PP

     UPF0242 150 llqeyqe 156
                 +l+ + +
  KKY21699.1 291 QLERLSR 297
                 9988765 PP

>> DUF4349  Domain of unknown function (DUF4349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       4.1   6.2e+03     136     171 ..      83     118 ..      82     128 .. 0.72
   2 ?    5.3   0.6    0.0078        12      89     130 ..     175     220 ..     172     221 .. 0.83
   3 ?    4.9   4.4     0.011        16     104     145 ..     214     256 ..     206     259 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.1
     DUF4349 136 egqlryLdnqvaystvtvtlrepeaeteaeeeegeg 171
                 ++++   +n  ++s v +t +++ ++++++++++++
  KKY21699.1  83 QQSQHGFKNPPDMSFVMLTESQVAPPQPPSQDQPNP 118
                 666777777889999999999988888888776444 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0078
     DUF4349  89 vDleaRlkaleasedrllallekak....svedlleiereLsevqa 130
                 v l++Rl+a ++++d + ++l+  +    + e++ ++e++L++ ++
  KKY21699.1 175 VSLQSRLQASTKERDAYIQFLKTLNnsipTEEEVASAENALQKAKE 220
                 779******************9855466677999999999987665 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.011
     DUF4349 104 rllallek.aksvedlleiereLsevqaeieslegqlryLdnq 145
                  l++  e+ ak  edl+++ere +   aei +le + ++Ld++
  KKY21699.1 214 ALQKAKEQeAKAFEDLIALEREKAGLDAEIAALEEESQALDKE 256
                 56666644499*****************************975 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   2.6      0.11   1.6e+02      12      50 ..     194     232 ..     190     237 .. 0.82
   2 ?    7.5   1.3    0.0023       3.4      17      46 ..     227     256 ..     223     271 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.11
                 XXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC- CS
       DivIC  12 gkkgllaykqlkqeiaalqaelaklkaeneeLeaevkdL 50 
                 + k+l++   +++e+a  ++ l+k k+++++  + +  L
  KKY21699.1 194 FLKTLNNSIPTEEEVASAENALQKAKEQEAKAFEDLIAL 232
                 566777778899*****************9998887766 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0023
                 XHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  17 laykqlkqeiaalqaelaklkaeneeLeae 46 
                  ++ +l++e a l ae+a+l +e ++L++e
  KKY21699.1 227 EDLIALEREKAGLDAEIAALEEESQALDKE 256
                 567788899999999999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1145  (0.063863); expected 358.6 (0.02)
Passed bias filter:                      733  (0.0408835); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.49
# Mc/sec: 3081.07
//
Query:       KKY21700.1  [L=165]
Description: hypothetical protein UCRPC4_g03467 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       789  (0.0440069); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1100.32
//
Query:       KKY21701.1  [L=363]
Description: putative 2-hydroxyacid dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-26   92.4   0.0    1.7e-22   79.7   0.0    2.6  2  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
  ------ inclusion threshold ------
      0.061   13.2   0.0       0.12   12.2   0.0    1.5  1  TDP43_N       Transactive response DNA-binding protein N-term
      0.071   12.8   0.0      0.083   12.6   0.0    1.2  1  2-Hacid_dh    D-isomer specific 2-hydroxyacid dehydrogenase, 


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   7.1e-05      0.43      46      73 ..     161     189 ..     127     200 .. 0.84
   2 !   79.7   0.0   2.8e-26   1.7e-22      80     178 .]     217     324 ..     206     324 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 7.1e-05
                   HHHHHHHHHHH.HTT-EEEEESSSHHHHH CS
  2-Hacid_dh_C  46 rIGqavakrlk.afgmkviaydrskkkee 73 
                   ++Gq++a r+  a+gm v+ay  s+++++
    KKY21701.1 161 HVGQRIAARVCsAMGMTVLAYTASPRPTA 189
                   689998766544************99887 PP

  == domain 2  score: 79.7 bits;  conditional E-value: 2.8e-26
                   CEECSHHHHHHH-.SEEEE-S--STTTTTSBSHHHHHCSTT.TEEEEESS-GGGB-HHHHHHHHHTT.......SCCEEEES--SSSSSGTCHHHHH CS
  2-Hacid_dh_C  80 velvsleellaes.Divslhlpltpetrhlinaeelakmkk.gailiNtaRGglvdeeaLleaLksg.......kiagaalDvfeeeplpedsplle 167
                    + + l+++l++s  ++ + +plt++trhli+  ela +++ g ++iN+aRG+++d++aL+  L+sg        + gaalDv+++eplp+d+pl+e
    KKY21701.1 217 TSTTALHTFLSQSlSYLLISVPLTASTRHLISTPELAILRRsGTYIINIARGPILDTDALISTLNSGpdpstgnSLVGAALDVTDPEPLPKDHPLWE 313
                   56678889999886799********************9976267*********************984444444699******************** PP

                   STTEEE-SS-T CS
  2-Hacid_dh_C 168 lpnviltPHia 178
                   +  vi++PH++
    KKY21701.1 314 TRDVIISPHVS 324
                   *********95 PP

>> TDP43_N  Transactive response DNA-binding protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     2e-05      0.12      17      73 ..      15      70 ..       5      71 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2e-05
     TDP43_N 17 ledDgtLllsTLqaqfpgAtGLkYrnpetgakRgvrldegklkpPedgWknkvyyvv 73
                + +D    +  L+  fp+ t ++Y +p   +++ +  d  kl  P+d Wk+++y ++
  KKY21701.1 15 IAQDTQPYVVQLRKTFPDVTFIYYDRPAVASFKDLPRDAAKLV-PKDVWKKTKYLIT 70
                55666666777999*********************99999986.6*********986 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.4e-05     0.083      56     103 ..      78     213 ..      63     332 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.4e-05
                 HHHHTT--EEEESSSSCTTB-HH..HHHHTT-EEEE-TTTTHHHHHHHH.................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx.................................................. RF
  2-Hacid_dh  56 lealpkLkviaragvGvDnvDld..aakerGilVtnvpgystesvAElt.................................................. 102
                 l+  p+Lk+i++ ++G +++     +   + i++tn  g +   +AE t                                                  
  KKY21701.1  78 LDLVPNLKWIHLSSAGSNQIQNHpvYTDTKDIIITNSSGIHGPQIAEWTimnmliarhkynqtyewqkqhlwgpsanlspvidhvgqriaarvcsamgm 176
                 7778****************875448899*******************999999999888888888888888888888877777777777777777777 PP

                 ....................................T CS
                 ....................................x RF
  2-Hacid_dh 103 ....................................a 103
                                                     +
  KKY21701.1 177 tvlaytasprptassrhdngfivpstgdpdgtipsaW 213
                 7776666665555555555555555555555555551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 2295.98
//
Query:       KKY21702.1  [L=324]
Description: putative dihydrodipicolinate synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-37  128.2   0.1    3.1e-37  127.9   0.1    1.1  1  DHDPS     Dihydrodipicolinate synthetase family
  ------ inclusion threshold ------
       0.12   12.4   0.1       0.23   11.5   0.1    1.3  1  DUF218    DUF218 domain


Domain annotation for each model (and alignments):
>> DHDPS  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.9   0.1   3.4e-41   3.1e-37       3     257 ..      15     286 ..      13     316 .. 0.81

  Alignments for each domain:
  == domain 1  score: 127.9 bits;  conditional E-value: 3.4e-41
                 SEEEEE----B-TTS.SB-HHHHHHHHHHHHHCT-SEEEESSCCCTGGGS-HHHHHHHHHHHHHHHTT....SSEEEEE---SSHHHHHHHHHCCCCCT CS
       DHDPS   3 sgiitalvtpfdedg.kldkealrklieflinkgvdglvvaGttGEsatlsteekeqlveiaveaakg....ripviagvGsnstseaiklakkaeeaG 96 
                 +g+ ++ +t fd d   ld + ++k +  l ++gv gl v G+ GE+  +s +e++ + + ++ea ++      p+i+g+G++st+eai  ak+a++aG
  KKY21702.1  15 AGVYVPTITFFDPDTeDLDLATIKKHAVRLAEAGVAGLTVQGSNGEAVHMSNQERITVTKATREALDEagfvDMPLIIGAGAQSTREAIIFAKEAAQAG 113
                 5888999999*998526**********************************************99997334459************************* PP

                 -SEEEEE---SS-..--HHHHHHHHHHHHHCHSS-EEEEE-HHH.HSHHHHHHHHHHHHTSTTEEEEEE-SS-CTHHHHHHCCC..........STTSE CS
       DHDPS  97 adgvlavtPYYnk..psqeglyqhfkaiieatdlpvilYnvpsr.tgadlspetvkrLaelenivgvKeavgdleevikikkev..........gkdlv 182
                  d  l+++P Y+k  +  ++l ++f+ i++    p+++Yn p+   g dls e + +L++ ++ivg K +  ++ ++++i k+v          ++ ++
  KKY21702.1 114 GDYTLVLPPSYYKamVPRKDLLDYFRDIASGSPIPLLIYNYPGVvNGIDLSAEDIIELSKHPKIVGCKLTCANVGKLQRITKQVesithlsgagSPGFM 212
                 *********99993346799*********9999*********86379***********************99995555555553111222222246677 PP

                 EEES-GGGHHHHHHTT-SEEEESCHHCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCCCCSCCHHHHHHHH CS
       DHDPS 183 iysGddelllsalslGadGvisvtsniagermrqlikalkeGdlaeaaelnekllplikilfaepnvilvktale 257
                    G  +++ +++  G+ Gvi+   n+ ++   +++++ +eG+++ea++ ++ + +  ++ + ++ + + k al+
  KKY21702.1 213 AMGGMADITIPVMMGGGSGVITGLGNVTPKACVKVFNLFAEGKVEEAKKAQAIVAQ-GDWGAIAGGIPGTKSALQ 286
                 777799999**************************************998876554.444444444445555555 PP

>> DUF218  DUF218 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   2.5e-05      0.23      18      81 ..      39     113 ..      31     127 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.5e-05
      DUF218  18 deaaelyragk..iivsGg.......gadedvseaeamaeylrelgvpeeailledrsrnTeenarfskell..k 81 
                 ++a++l++ag   + v G        +++e+++  +a +e l e g+ +  +++   +++T+e + f+ke +  +
  KKY21702.1  39 KHAVRLAEAGVagLTVQGSngeavhmSNQERITVTKATREALDEAGFVDMPLIIGAGAQSTREAIIFAKEAAqaG 113
                 689*******44699998888999987789****************77668******************988652 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.50
# Mc/sec: 1961.56
//
Query:       KKY21703.1  [L=975]
Description: putative dna mismatch repair [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-10   39.2   0.0    1.1e-09   38.0   0.0    1.6  1  DNA_mis_repair  DNA mismatch repair protein, C-terminal domai
    4.3e-09   36.3   0.0      1e-08   35.1   0.0    1.6  1  HATPase_c_3     Histidine kinase-, DNA gyrase B-, and HSP90-l
    1.7e-08   35.0   0.2    4.2e-08   33.7   0.1    1.7  2  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l
  ------ inclusion threshold ------
        2.4    9.0   9.5       0.19   12.6   2.6    2.7  3  ANAPC_CDC26     Anaphase-promoting complex APC subunit CDC26


Domain annotation for each model (and alignments):
>> DNA_mis_repair  DNA mismatch repair protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   2.4e-13   1.1e-09      19     118 ..     250     362 ..     235     363 .. 0.78

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 2.4e-13
                     EETTEEEEEEEE-CC..G-BTTGGEEEEEETTEEE--H.HHHHHHHHHHH..........CCSSSSSB-EEEEEEEESSGGEE-TSSTT----EE CS
  DNA_mis_repair  19 eeeqlkieGfiskpe..lsrskrdkqflfvNgRlvksk.elkkaireaYk..........ellpkgrypvvvLnleidpeevDvNvhPtKreVrf 100
                     e+ +++i  ++++++  ls+ ++  qf+ v+gR+++ +  l k i + +k           +  + + p+++++++ +p + DvN++P+K++  f
      KKY21703.1 250 ESGDIHILALVPEANsdLSKVSSGGQFISVDGRPITTTrGLGKDILRLFKsyvrssasqnGQDVRLQDPFICMHIKSPPGSYDVNIEPAKDDMLF 344
                     4555788888877754499999*************998745555555555444455544444556689*************************** PP

                     TTHHCHHHHHHHHHHHHH CS
  DNA_mis_repair 101 qdeeevieaieealkeal 118
                      d +++++ ie+ l++++
      KKY21703.1 345 VDGSALMTEIENILQSVY 362
                     **************9987 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   2.2e-12     1e-08       5     106 ..      25     129 ..      21     142 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 2.2e-12
  HATPase_c_3   5 kAlaelvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelknalrlatsskeakr......kstslGkkGiGlklAslslgkkltvitkkeg 96 
                  +++ elvdNsld++a+ ++ie++ n    + i+++D+G G+ +e+   + +   +sk ++       ++tslG +G     ++  l+ +  v+t+ +g
   KKY21703.1  25 SVVKELVDNSLDSKATAITIEISSNT--LDLIQVKDNGIGIGPEDRPHVCKANYTSKIETIedlttiGATSLGFRGQA-LASVAELSGETIVTTRIDG 119
                  689*********************86..599*************9888887777766643234444578889999988.4556677778888889899 PP

  HATPase_c_3  97 esstltldvd 106
                  e   ++l+++
   KKY21703.1 120 EIVGTKLKYH 129
                  8887777665 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.1   9.5e-12   4.2e-08       8      77 ..      25      98 ..      21     136 .. 0.73
   2 ?   -3.4   0.0       3.1   1.4e+04      47      72 ..     288     311 ..     253     315 .. 0.68

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 9.5e-12
                HHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCS.TTCH.....HCSTCHTSTSSSH.H CS
   HATPase_c  8 qiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfe.kfsq.....ddstkrggggtGl.G 77
                 ++++lvdN+++  +ka+ i++ei++ +    i+v+DnGiGi +ed++++ + ++++     +d t++g    G+ G
  KKY21703.1 25 SVVKELVDNSLD--SKATAITIEISS-NTLDLIQVKDNGIGIGPEDRPHVCKaNYTSkietiEDLTTIGATSLGFrG 98
                589*********..69*********4.447889*****************998888888766555555544444433 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.1
                 SSSTTHHHTGTCSTTCHHCSTCHTST CS
   HATPase_c  47 iGipkedlkklfekfsqddstkrggg 72 
                 +G+ k++l +lf+++++ +s++++g+
  KKY21703.1 288 RGLGKDIL-RLFKSYVR-SSASQNGQ 311
                 44444444.48888888.66666654 PP

>> ANAPC_CDC26  Anaphase-promoting complex APC subunit CDC26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       3.3   1.5e+04      42      60 ..     401     419 ..     391     432 .. 0.37
   2 ?   12.6   2.6   4.2e-05      0.19      13      57 ..     680     728 ..     677     744 .. 0.79
   3 ?   -1.9   0.0       1.4   6.3e+03      29      45 ..     929     945 ..     922     973 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.3
  ANAPC_CDC26  42 tsqasdtdaddftsedadp 60 
                  + +++d++ ++ +s+   +
   KKY21703.1 401 HASHADNQGGGDASHAKWS 419
                  2222222222222222222 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.2e-05
  ANAPC_CDC26  13 seDiaeyederqrqkeqaaqqqrsqasastsqasdtdaddft....sed 57 
                   +D+ e+e ++q +++ ++q++ s  ++st + + ++++++t      +
   KKY21703.1 680 LDDVMEFESRKQAAQQAQRQAKLSRLQQSTLSLAGGSTQNSTddssLLQ 728
                  69********************999999999998888777774444333 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.4
  ANAPC_CDC26  29 qaaqqqrsqasastsqa 45 
                  q +qqq++q + ++s++
   KKY21703.1 929 QITQQQYDQRNPKNSEQ 945
                  44445555544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (975 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 6456.65
//
Query:       KKY21704.1  [L=568]
Description: putative zinc cadmium resistance protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-51  173.9  10.8    1.4e-50  171.8  10.8    1.8  1  Cation_efflux  Cation efflux family
     0.0028   17.8   0.1     0.0063   16.6   0.1    1.5  1  ZT_dimer       Dimerisation domain of Zinc Transporter


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.8  10.8   1.5e-54   1.4e-50       2     199 .]      10     402 ..       9     402 .. 0.99

  Alignments for each domain:
  == domain 1  score: 171.8 bits;  conditional E-value: 1.5e-54
  Cation_efflux   2 ilsllanlilalvelivglltnSlalladafhslsdlvsllllllalkls.rkppderfpfGygrlevlgalvsgllllglavfllleaiqklike 96 
                    ++ l++  +++l e++vg+  +Slal+ad+fh+l d++sl+++l a++++ +  +++ +++G++r+e+lgal++g++l++l ++++leaiq+++ e
     KKY21704.1  10 LILLAIDSLFFLLEIVVGYAVHSLALVADSFHMLNDVISLVVGLWAVRVAnSSANTKMYTYGWQRAETLGALINGVFLVALCLSIFLEAIQRFV-E 104
                    567889999*****************************************999999**************************************.* PP

  Cation_efflux  97 gereihaglalvvalvslvvnlalllilrragrkl............................................................. 131
                    ++++ ++ l+l+v++ +l+ nl++l +++ +g+++                                                             
     KKY21704.1 105 PQEVSNPKLVLIVGCCGLASNLLGLVLFHDHGHAHggeeeehghshgdpistaeegqshvnvdqaetqavasesgnvadilpqsaigawqkaphea 200
                    ************************************************************************************************ PP

  Cation_efflux 132 ................................................................................................ 131
                                                                                                                    
     KKY21704.1 201 erefsrsdeddttassgvtptrshgtgtpharhrrrtsgsmsrsrgfgrlealnsesddeedaivddedevqaphersellkhpngsatpkkrgrs 296
                    ************************************************************************************************ PP

  Cation_efflux 132 ......................................rsaalkaaalhvlgDaltslgvlvsalvillfnlksgplaDpvaslligliilysalk 189
                                                          ++ ++k+++lhv+gDal+++gv+vsal+i+l+   +++++Dp++sl+i +iil sa +
     KKY21704.1 297 kshashkqkdhrhdswhadhthakpaghgsggghghshGDLNMKGVFLHVMGDALGNIGVIVSALFIWLTSFSWRYYFDPAVSLIITCIILASAIP 392
                    **********************************************************************99988********************* PP

  Cation_efflux 190 llkeslseLl 199
                    l+k ++++Ll
     KKY21704.1 393 LCKAASRILL 402
                    ********97 PP

>> ZT_dimer  Dimerisation domain of Zinc Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1     7e-07    0.0063       6      46 ..     411     452 ..     408     460 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 7e-07
                 HHHHHHHHTT-SS-EEEEEEEEE.-S----EEEEEEEE-TTS CS
    ZT_dimer   6 eeeireiiksvpgvkgvhdlrtr.ksGskifvdlhievdgdl 46 
                 +++ir+ i+  pgv+g+h+l++   sG+k +++lhi+vd ++
  KKY21704.1 411 IDDIRDDIEGLPGVIGCHHLHVWqLSGTKHVASLHIQVDCEI 452
                 6789999999************9799*************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3522.02
//
Query:       KKY21705.1  [L=792]
Description: putative iq calmodulin-binding motif protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
        2.8    6.5  12.6        5.3    5.6  12.6    1.4  1  AAA_13       AAA domain
        3.6    8.4  20.3        3.3    8.5  12.7    3.1  2  WBS_methylT  Methyltransferase involved in Williams-Beuren sy


Domain annotation for each model (and alignments):
>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  12.6   0.00059       5.3      93     207 ..     643     757 ..     634     769 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.00059
      AAA_13  93 ekqekieklkkeikkleekleaaeaqlqkaekekkklekeledeawkkivkkknsalsealkglkyeekfkerllkelkkknrkaaellsdeelkakle 191
                  +++ki+++++++k   ek+++ ++ ++++e++k+k ++  ++++w + ++ ++ +  e+ k  k+e  f +rl+++l+    ++++ l+ + + a+  
  KKY21705.1 643 KTRKKIKEAEQDMKHTAEKVTNPQKAKEEEERQKDKSKSAEKERMWLEHKQAEERKKVEEDKRRKREGSFTARLMQKLHLRGSNNSVGLKGASRGAADG 741
                 5789********************************99999999**98865555555577778888***********9999889999999999888877 PP

      AAA_13 192 tvesenlpelaplsls 207
                  ++++++ e a+++++
  KKY21705.1 742 DISTHEKSETATAETR 757
                 7777777777766544 PP

>> WBS_methylT  Methyltransferase involved in Williams-Beuren syndrome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.8     0.021   1.9e+02      18      60 ..     349     391 ..     340     403 .. 0.46
   2 ?    8.5  12.7   0.00037       3.3      13      66 ..     646     700 ..     635     716 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.021
  WBS_methylT  18 dgeeeseeaeqvkyekrrrkrkkr..kkkkkkavksreWilkKKe 60 
                  +++++s+ +e+ k+ +r+r++++r  +kk+ k   + ++ l+  +
   KKY21705.1 349 EEHDHSK-SEEGKMAQRQRRAQARndRKKAAKMM-DLQYFLEMVD 391
                  3333333.33334444444444332144444333.5555555555 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00037
  WBS_methylT  13 kglgedgeeeseeaeqvkyekrrrkrkkr.kkkkkkavksreWilkKKerrrkkG 66 
                  k  +e +++ +++ae+v + ++++++++r k+k+k+a+k+r W+ +K+ ++rkk 
   KKY21705.1 646 KKIKEAEQDMKHTAEKVTNPQKAKEEEERqKDKSKSAEKERMWLEHKQAEERKKV 700
                  333333344455788999888877766665999999999*************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2205  (0.122985); expected 358.6 (0.02)
Passed bias filter:                      722  (0.04027); expected 358.6 (0.02)
Passed Vit filter:                       118  (0.00658152); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.48
# Mc/sec: 4926.17
//
Query:       KKY21706.1  [L=531]
Description: putative maltose permease mal31 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-85  285.9  21.1    6.7e-85  285.6  21.1    1.0  1  Sugar_tr  Sugar (and other) transporter
    2.2e-19   69.6  51.5    7.5e-16   58.0  29.0    3.0  3  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        5.1    7.0   9.6      0.091   12.6   0.7    2.8  4  DUF5337   Family of unknown function (DUF5337)
        8.4    6.0   6.6        1.2    8.7   0.2    2.7  2  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.6  21.1   1.5e-88   6.7e-85       3     452 .]      57     507 ..      55     507 .. 0.89

  Alignments for each domain:
  == domain 1  score: 285.6 bits;  conditional E-value: 1.5e-88
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkns 101
                  + +++ ++ g+d  +i +f++l++f+k+fg+    +   + + +++ +     +G+i+G+l  g+  ++fGRk +l++++  +++  +lq++++   s
  KKY21706.1  57 AFFCIAVIMAGFDPQLITSFYALPAFQKKFGYLYDGEYIIS-APWQTGLGMGNPIGQILGALACGWPLEKFGRKLTLAACCCWSIVWVFLQFFSQ---S 151
                 56678889***********************9999987775.5555555555679****************************************...* PP

                 -TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHH CS
    Sugar_tr 102 vevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylve 200
                 + +l++g +l+G++ G+  v++P+y+sE++p +lRg l+   +la ++G+++a+++ +g++  s+++ ++i+++lq++++++lli+l f+PESP++lv 
  KKY21706.1 152 LGALCAGEMLAGLAYGFYVVIAPTYASEVCPLALRGVLTASVNLAFVIGQFIAQGCSAGVESRSDQWAYKIPFALQWIWPVVLLIGLSFAPESPYWLVR 250
                 ************************************************************777777********************************* PP

                 TT-HHHHHHHHHHHHHC.....HHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HHH CS
    Sugar_tr 201 kgkeeeakevlaklrge.....edadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks..llv 292
                 +g++e+a++ l  l         da   + ee d le+e e+++ +++++ ++  +++r+ i +v+ ++q   G n ++ y++++fe++gl++s  + +
  KKY21706.1 251 QGRKEDARAALLSLSSAkhrpdIDAMLVMIEETDLLEREIEKSTSYIDCFRGT--NLRRTEISIVVYLIQVIGG-NPLIGYATYFFEQAGLDPSdaFNM 346
                 *********99984433333224444556677777777766666666666666..6899999999888876666.*******************77777 PP

                 HHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHH CS
    Sugar_tr 293 tiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaia 391
                  ++  ++ fv t+++++l+++fGRRt++ +G+++m+  ++i+g  +l + +++++a  +  +++ ++++ +++++gp+++v++sE++++++R+ ++aia
  KKY21706.1 347 GVGNTALGFVGTCISWPLMSKFGRRTIYNTGMVFMTTILFIIG--FLDIGHRKTGAIWAQATLMDIWTFTYQMTVGPICFVIISEISSTRLRGRTIAIA 443
                 77778999**********************************9..55555555677777788889********************************** PP

                 HHHHHHHHHHHHHHHHHHHCHHH...T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 392 vavnwlanflisllfpiiteaig...ggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 +av+ +a+++ ++ +p+++++ +    g+ +++f+++ ++ ++++f+ +pe  grt+eei+ lf
  KKY21706.1 444 TAVQAIASIVFTIAMPYMLSSDQanwRGKAGFLFGAISLACLVWCFLRIPESRGRTFEEIDILF 507
                 *******************998888899********************************9876 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   1.0   0.00074       3.3     199     242 ..      42      92 ..       4     108 .. 0.70
   2 !   58.0  29.0   1.7e-19   7.5e-16       2     352 ..      60     454 ..      59     455 .. 0.73
   3 !   25.8  14.5     1e-09   4.6e-06      22     184 ..     331     502 ..     312     518 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00074
       MFS_1 199 awkallkdpvlwillialllfffgfsg.......lltllplylqevlgls..g 242
                  w+a++  p    +++a+++++++++g        ++ lp + q+ +g+   g
  KKY21706.1  42 FWQAVKLYPKAV-FWAAFFCIAVIMAGfdpqlitSFYALPAF-QKKFGYLydG 92 
                 677888878553.88888888877777899999999999998.******9662 PP

  == domain 2  score: 58.0 bits;  conditional E-value: 1.7e-19
       MFS_1   2 llaaflsalarsilgpalpl.alaedlg........ispseigl...lltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw. 86 
                 ++a+++++++  ++++++ l a ++ +g        is   + +   l  +  +g+++++l  G+  ++fGr+ +l ++  +++++ ++l  f s++  
  KKY21706.1  60 CIAVIMAGFDPQLITSFYALpAFQKKFGylydgeyiIS---APWqtgLGMGNPIGQILGALACGWPLEKFGRKLTLAACCCWSIVW-VFLQfF-SQSLg 153
                 68888999999999999988899999997766644422...34433367779**********************************.666646.77777 PP

       MFS_1  87 lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrk 182
                 +l+++ +l+Gl++g+++ ++ ++++++ p   rg  ++ ++++f +G  ++ + ++ + s      +  +f +  i  +++++ +l + pe+p    r+
  KKY21706.1 154 ALCAGEMLAGLAYGFYVVIAPTYASEVCPLALRGVLTASVNLAFVIGQFIAQGCSAGVESRSDqwaYKIPFALQWIWPVVLLI-GLSFAPESPYWLVRQ 251
                 ***************************************************88888664333322266666666666666655.335555555555555 PP

       MFS_1 183 spkeee...............................kgtgpaplvpawkallkdpvl..............w.....illialllfffgfsglltllp 231
                   ke+                                +                   +              +     ++++ l+ +  g+ ++ + + 
  KKY21706.1 252 GRKEDAraallslssakhrpdidamlvmieetdllerE-------------------IekstsyidcfrgtnLrrteiSIVVYLIQVIGGNPLIGYATY 331
                 55555255555555555555555554444443333221...................022222222222222134554555555555555555666655 PP

       MFS_1 232 lylqevlgls..glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvl....iGf.glgfvfpslla 323
                 +   e+ gl+   ++ +g  ++ +al++++ ++ +   + ++grr++ + ++++++++++++ +l   + ++ ++++ ++    ++f  + +v p+ ++
  KKY21706.1 332 F--FEQAGLDpsDAFNMG--VGNTALGFVGTCISWPL-MSKFGRRTIYNTGMVFMTTILFIIGFLDIGHRKTGAIWAQATlmdiWTFtYQMTVGPICFV 425
                 5..699999988558888..88888887777755555.569***************************9999999944444477***888888****** PP

       MFS_1 324 lasdlappeeagtasglfntagslggalg 352
                 ++s+  +++ +g+ +++++ +++++++++
  KKY21706.1 426 IISEISSTRLRGRTIAIATAVQAIASIVF 454
                 *************************9986 PP

  == domain 3  score: 25.8 bits;  conditional E-value: 1e-09
       MFS_1  22 alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllf...a....sslwlllvlrvlqGlga.galfpagaaliad 112
                 +  e+ g++ps +  + ++ +++ +v++ +  +l+ +fGrr ++ +g++++   l+++ f   +      +w+ + l  +  +++  ++ p++ ++i++
  KKY21706.1 331 YFFEQAGLDPSDAFNMGVGNTALGFVGTCISWPLMSKFGRRTIYNTGMVFMTTILFIIGFldiGhrktGAIWAQATLMDIWTFTYqMTVGPICFVIISE 429
                 55566677777777788888888999999999**********************666667454144444466444444455555547799********* PP

       MFS_1 113 wfpkeergraigllsagfslGailgpllgglla..sslgWrav.fyilaivsllafvlfllllpeepperkrksp 184
                 +++ + rgr i++++a  ++++i+  ++ ++++  ++++Wr+   ++++++sl +  l++++l+ ++++ +++++
  KKY21706.1 430 ISSTRLRGRTIAIATAVQAIASIVFTIAMPYMLssDQANWRGKaGFLFGAISLAC--LVWCFLRIPESRGRTFEE 502
                 **********************77766666655377888**95489999999999..667888888887776655 PP

>> DUF5337  Family of unknown function (DUF5337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2       1.1   4.8e+03      26      38 ..     141     153 ..     129     172 .. 0.60
   2 ?   -3.3   0.2       1.9   8.3e+03      17      31 ..     352     366 ..     350     388 .. 0.72
   3 ?   -3.6   0.0       2.4   1.1e+04      16      33 ..     376     393 ..     369     396 .. 0.58
   4 ?   12.6   0.7     2e-05     0.091      12      61 ..     436     491 ..     429     494 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
     DUF5337  26 lwlgaqwigeqlg 38 
                 +w+ +q+  + lg
  KKY21706.1 141 VWVFLQFFSQSLG 153
                 4555555555544 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.9
     DUF5337  17 alviavtmllwlgaq 31 
                 al  ++t + w +++
  KKY21706.1 352 ALGFVGTCISWPLMS 366
                 677777877776665 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 2.4
     DUF5337  16 valviavtmllwlgaqwi 33 
                 +++v   t+l+ +g+  i
  KKY21706.1 376 TGMVFMTTILFIIGFLDI 393
                 455666666666665544 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 2e-05
     DUF5337  12 kgrlvalviav....tmllwlgaq.wi.geqlglsnRyalLfdLaAlAaliwalvv 61 
                 +gr++a++ av    ++++ +++  ++   q ++ ++  +Lf  + lA l+w ++ 
  KKY21706.1 436 RGRTIAIATAVqaiaSIVFTIAMPyMLsSDQANWRGKAGFLFGAISLACLVWCFLR 491
                 78888888776111144555555532224689********************9876 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   1.6       0.4   1.8e+03      32      52 ..     130     150 ..     109     216 .. 0.66
   2 ?    8.7   0.2   0.00027       1.2       6      55 ..     445     496 ..     440     515 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.4
     DUF4131  32 vllllllllllallgfalrap 52 
                   l+++ +  ++++++++ ++
  KKY21706.1 130 LTLAACCCWSIVWVFLQFFSQ 150
                 334444444444444433333 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00027
     DUF4131   6 alvllalllllllllllllrr..rprrrvllllllllllallgfalrapqpn 55 
                 a+ ++a+++++++  ++l+ +  ++r +  +l++++ l++l++++lr p+  
  KKY21706.1 445 AVQAIASIVFTIAMPYMLSSDqaNWRGKAGFLFGAISLACLVWCFLRIPESR 496
                 5667888888888888887669999**********************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3521.90
//
Query:       KKY21707.1  [L=133]
Description: putative glucosamine 6-phosphate n-acetyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-11   43.2   0.0    4.6e-11   43.0   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    3.2e-09   36.8   0.0    4.5e-09   36.3   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    9.8e-08   32.3   0.1    1.7e-07   31.6   0.1    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0019   18.1   0.0     0.0036   17.2   0.0    1.5  1  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0     1e-14   4.6e-11      55     117 .]      58     120 ..      14     120 .. 0.85

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 1e-14
                     T...TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  55 d...ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     +   ++g v++ie+++V +  +gkGlG + ++al   a++ g+ k+ l +++ n   i++Yek+G+
      KKY21707.1  58 EriyNRGIVGHIEEVVVLKGEQGKGLGLKVIQALDSVAKSVGCSKLILNCSPEN---IPFYEKCGY 120
                     244458899*****************************************999*...********8 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0     1e-12   4.5e-09      49     112 ..      61     126 ..      47     129 .. 0.91

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 1e-12
  Acetyltransf_10  49 rdgs...hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavgee 112
                      ++++   hi+ ++V +  +g+G+g + ++a+ + a+  g + +l +n sp+ +pfYek+G+++ g+e
       KKY21707.1  61 YNRGivgHIEEVVVLKGEQGKGLGLKVIQALDSVAKSVGCS-KLILNCSPENIPFYEKCGYEKAGQE 126
                      5555677****************************999888.********************99887 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.1   3.8e-11   1.7e-07      12      76 .]      63     122 ..      37     122 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 3.8e-11
                     TEEEEEEEEEEESTCTEEEEE-GGGTTSSHHHHHHHH....TT.SEEE.EEEEEE..THHHHHHHHHHTTEEE CS
  Acetyltransf_7  12 gkivGfialslldaeitrlaVdpeyrgkGiGraLlea....ae.kgii.leqlel..naekaikfYeklGFee 76 
                      +ivG         +i++++V++  +gkG+G + ++a    a+  g+  l    l  + +++i+fYek+G+e+
      KKY21707.1  63 RGIVG---------HIEEVVVLKGEQGKGLGLKVIQAldsvAKsVGCSkL---ILncS-PENIPFYEKCGYEK 122
                     34445.........8888******************86665225666422...23223.378*********95 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   8.1e-07    0.0036      20      82 ..      64     125 ..      49     130 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.1e-07
                 TT.SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S.-EEEEEETT-HHHHHHHHHHT-EEEEE CS
        FR47  20 dg.gelgalqvlpehrrrGlgsrlvkalakeiaergk.tvllvvvasNtpsirlyeklGfekiee 82 
                  + g +  + vl+  +++Glg ++++al       g  +++l   ++N   i +yek G+ek+ +
  KKY21707.1  64 GIvGHIEEVVVLKGEQGKGLGLKVIQALDSVAKSVGCsKLILNCSPEN---IPFYEKCGYEKAGQ 125
                 33599***********************77655566404445555555...679*******9844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.48
# Mc/sec: 830.71
//
Query:       KKY21708.1  [L=79]
Description: hypothetical protein UCRPC4_g03475 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.44
# Mc/sec: 536.30
//
Query:       KKY21709.1  [L=239]
Description: putative px domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-18   64.7   0.0      1e-17   64.1   0.0    1.3  1  PX        PX domain


Domain annotation for each model (and alignments):
>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   5.6e-22     1e-17      20     110 ..     140     233 ..     124     236 .. 0.92

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 5.6e-22
                 EEEEEEEEETTS.SSEEEEEEEHHHHHHHHHHHHHHHT.....TSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHH CS
          PX  20 syylyevelktg.akewtvkRrYsdFeeLhskLlrkfp.....rvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrnsevlteFL 110
                  y++y+v+++t       +++rYs+F +L+++L   fp     +  +P lP+k+lf++   ++++f+e rrkgL  +L+++l +pe+  s+++++F+
  KKY21709.1 140 AYIVYNVRVETLdGGPIFIRKRYSEFDQLRQDLVLAFPhatkhTAALPLLPPKSLFKK---FQPRFLEARRKGLAYFLNCVLLNPEFAGSPIVKDFI 233
                 577777777777669*****************************************97...***********************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1519.11
//
Query:       KKY21710.1  [L=439]
Description: hypothetical protein UCRPC4_g03477 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-32  110.9   3.5    2.5e-32  110.9   3.5    2.8  4  SAS4            Something about silencing, SAS, complex subun
  ------ inclusion threshold ------
       0.57    9.6  24.9      0.026   14.0  15.6    2.7  3  SDA1            SDA1


Domain annotation for each model (and alignments):
>> SAS4  Something about silencing, SAS, complex subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       1.1   9.7e+03      55      66 ..      17      28 ..      15      33 .. 0.78
   2 !  110.9   3.5   2.8e-36   2.5e-32       1      98 [.      72     167 ..      72     168 .. 0.98
   3 ?   -4.3   4.1         2   1.8e+04      14      36 ..     184     206 ..     172     216 .. 0.55
   4 ?   -2.1   0.0      0.47   4.3e+03      67      92 ..     257     282 ..     251     287 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.1
        SAS4 55 kitkindpkdkk 66
                +it ind++d++
  KKY21710.1 17 IITFINDVQDSA 28
                589999998865 PP

  == domain 2  score: 110.9 bits;  conditional E-value: 2.8e-36
        SAS4   1 DpLsDklYekaHkrmerqEkrmrniekeraesEadrlerllekLqgqdwlrvlgkitkindpkdkkelerkreltikeieallekferwkkeekklkk 98 
                 DpL+ + Y +aH+r erqEk++rniekera++E+ +l+rll++L+g+dwl+v+g+++ i++  dkk +e+kr  +i+e++al+ekf++wk+eek++k 
  KKY21710.1  72 DPLDSEAYIRAHRRPERQEKQLRNIEKERAQHEKVQLDRLLDELKGPDWLKVMGISG-ITE-GDKKLYEPKRSCFIREVTALIEKFKHWKEEEKRRKL 167
                 9*****************************************************999.**9.*********************************985 PP

  == domain 3  score: -4.3 bits;  conditional E-value: 2
        SAS4  14 rmerqEkrmrniekeraesEadr 36 
                   e qE++  ++  e++e E+ +
  KKY21710.1 184 DIEAQENEDAQEQEEESELEQTQ 206
                 34555555555555554444444 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 0.47
        SAS4  67 elerkreltikeieallekferwkke 92 
                 + + +r+l+i+  +a l +f +++ +
  KKY21710.1 257 DAQAARQLLIEASSAELPTFPKLRGN 282
                 567899*****999999999988765 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.8     0.033   2.9e+02     250     293 ..      67     109 ..      20     116 .. 0.60
   2 ?   14.0  15.6   2.9e-06     0.026      74     161 ..     153     248 ..     140     342 .. 0.53
   3 ?   -1.5   0.0      0.15   1.3e+03      32      66 ..     393     425 ..     390     430 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.033
        SDA1 250 aeksedlvtasdieglakkrkatkeerlasvkegredrekfgsk 293
                 +++++d ++++  +  + +r + +e++l  +++ r + ek +  
  KKY21710.1  67 RRSTKDPLDSEAYIRAH-RRPERQEKQLRNIEKERAQHEKVQLD 109
                 34445566655555555.44667788888999999988887765 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 2.9e-06
        SDA1  74 eLlekwkeeekkekre........eeeedsddeddeedwevesdddseedseggwidvesdeeeieesdesedeeeeeeeeeekeekeeeeeeee.... 160
                 e  ++wkeeek++k e             +++ +d e +e e+++++ee+se +  + ++++ee++++++++d++e  ++++++ + +++    +    
  KKY21710.1 153 EKFKHWKEEEKRRKLErdqalleqT---HEQETEDIEAQENEDAQEQEEESELEQTQQDESGEEASSEASDDDDQEVVDSQADNSSGDDNGSL-Qgpph 247
                 5566788888877776666664321...22233333444444444445555555555555555555444344444333333333333322222.22332 PP

        SDA1 161 e 161
                 +
  KKY21710.1 248 S 248
                 1 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.15
        SDA1  32 RevnPelLkkkdrGkpaemelrsekkakkfGeeev 66 
                   + P+ Lk kd G p e+ +  ++++k  Ge+++
  KKY21710.1 393 EHIVPSNLKSKDFGLPGEILK--TRQSKGVGEDKQ 425
                 5789999*******9999888..677777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2219  (0.123766); expected 358.6 (0.02)
Passed bias filter:                      628  (0.0350271); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.39s 00:00:01.35 Elapsed: 00:00:00.54
# Mc/sec: 2445.16
//
Query:       KKY21711.1  [L=365]
Description: putative thioredoxin reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-48  164.3   0.9    4.2e-48  164.1   0.9    1.0  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    3.6e-18   65.9   0.1    7.4e-17   61.6   0.0    2.0  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    2.3e-15   56.9   2.2    5.2e-14   52.6   0.3    2.7  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    2.7e-05   23.6   2.5       0.59    9.3   0.1    3.1  3  FAD_binding_3  FAD binding domain
    6.3e-05   23.4   0.3      0.016   15.6   0.1    2.6  2  NAD_binding_7  Putative NAD(P)-binding
    6.7e-05   22.2   0.2      0.001   18.4   0.1    2.3  2  Thi4           Thi4 family
    0.00064   19.9   0.9      0.039   14.2   0.1    2.5  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0013   18.8   0.0       0.87    9.7   0.0    2.9  3  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
      0.002   17.3   0.1       0.84    8.7   0.0    3.2  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
     0.0078   15.3   4.6        2.5    7.1   0.1    4.0  4  GIDA           Glucose inhibited division protein A
  ------ inclusion threshold ------
       0.19   11.3   5.6         15    5.1   0.0    3.4  4  DAO            FAD dependent oxidoreductase
       0.35   10.2   5.0       0.27   10.5   0.3    2.5  3  FAD_oxidored   FAD dependent oxidoreductase
       0.59    9.2   6.8        2.3    7.2   1.1    3.3  4  FAD_binding_2  FAD binding domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.1   0.9   3.1e-51   4.2e-48       2     292 ..      12     315 ..      11     317 .. 0.91

  Alignments for each domain:
  == domain 1  score: 164.1 bits;  conditional E-value: 3.1e-51
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE...TTHCHHHCSHHHHCHHHHHHHHHHHHH.........HHHHCHHHHCCCCHCCTCEEEEESCEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve...legtclnggcllskallgvaedaeias.........evvkklnqgielllgeevvkidpgkkkvkl 87 
                  +v++iG+GpA+++aa +l++a++k +l+e   ++gt  +g+   ++ +++++++++ +             ++ + g e++++ ++ ++d ++k +kl
   KKY21711.1  12 KVAIIGSGPAAHTAAVYLSRAELKPVLYEgmmAGGTAAGGQLTTTTDIENFPGFPKGIGgselmenmkA--QSERFGTEVITE-TIARVDLKSKPFKL 106
                  8***************************99***************************99**99988643..444555666666.789*********** PP

                  TEEEC...TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS- CS
                  xxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  88 ekkke...gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrllrald 182
                    + e   +d    ++d++++AtG+++r+lg+ G+ ++++ ++++++ +++     ++k +vv+GgG  + E A++l+k+g++v ++ +rd l     
   KKY21711.1 107 WREWEdgpDDAPAHTADAVIIATGANARRLGLTGEDKYWQNGISACAVCDGAVPIFRNKPLVVIGGGDSAAEEAMFLTKYGSKVIVLVRRDVLR---- 200
                  987779999999999*********************************************************************9888888885.... PP

                  HHHHHHHHHHHHHT.TEEEEESCEEEEEEETTE........EEE.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSB.ESST CS
                  xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx........xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
  Pyr_redox_2 183 kelsaaleealeke.Gvevklgtsvkeidgnge........kle.vvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflr.tnvp 269
                    +s++++++l ++ +vevk++t++ e+ g+++        +l+ +v +++e ida  +++avG  p t+l+  k ++e+de+g+i++ +    t+++
   KKY21711.1 201 --ASKTMAKRLLAHpKVEVKFNTVAAEVHGEEKqnglmthlRLKnTVSGEEELIDANGLFYAVGHDPATSLV--KEQIECDEDGYIKTTPGTSfTSIK 294
                  ..9999999999999********************999966566888888888****************996..889***********99996488** PP

                  TEEE-GGGCTECCSS--HHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 270 giyaiGDvaggkggpelaqaAvq 292
                  g++a+GDv+  ++++++a ++  
   KKY21711.1 295 GVFAAGDVQ--DKRYRQAITSAG 315
                  *********..777777776655 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.065        90       2      24 ..      15      37 ..       8      45 .. 0.82
   2 !   61.6   0.0   5.3e-20   7.4e-17     124     305 .]     121     300 ..     115     300 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.065
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledy 24
                 IiG GPa  +aa+ l +a+l+ +
   KKY21711.1 15 IIGSGPAAHTAAVYLSRAELKPV 37
                 89999999999999999888654 PP

  == domain 2  score: 61.6 bits;  conditional E-value: 5.3e-20
  Pyr_redox_3 124 eAkkviiAtGefdkPnklnipGeek...lvkhyskvk..efhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsysl.kpdie 215
                  +A+ viiAtG   + ++l+  Ge+k   + +    v   ++  ++++ +vViGg++Sa++ A+ l ++g++V v++r++ ++++++  +  l  p +e
   KKY21711.1 121 TADAVIIATGA--NARRLGLTGEDKywqNGISACAVCdgAVPIFRNKPLVVIGGGDSAAEEAMFLTKYGSKVIVLVRRDVLRASKTMAKRLLaHPKVE 216
                  799*******9..9**********844345555555322455688999***********************************998887765369999 PP

  Pyr_redox_3 216 nrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkkslfeldedgrpvlteeteetnvpglflaG 305
                   +++++ +    +v+ +++ + + ++  + k + + ++++   +  ++a+G +p +s++k +++e dedg+++ t+ t  t ++g+f aG
   KKY21711.1 217 VKFNTVAA----EVHGEEKQNGLMTH-LRLKNTVSGEEELIDANGLFYAVGHDPATSLVK-EQIECDEDGYIKTTPGTSFTSIKGVFAAG 300
                  99998866....67888777777654.5566777777899999****************9.99*************************99 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.088   1.2e+02       1      23 [.      12      34 ..      12      42 .. 0.86
   2 !   52.6   0.3   3.7e-17   5.2e-14       2      76 ..     167     239 ..     166     247 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.088
                EEEEECSSHHHHHHHHHHHHTTS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgk 23
                kv+++G+G  +  +A +l++   
  KKY21711.1 12 KVAIIGSGPAAHTAAVYLSRAEL 34
                79***************998765 PP

  == domain 2  score: 52.6 bits;  conditional E-value: 3.7e-17
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHT.TEEEECSEEEEEEEEETT..S.EEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekn.gievllntkveeiegsed..g.vesv 76 
                 +vv+GgG+++ E+A +l+++g+kV v++r+d l+      ask ++++l ++ ++ev +nt+++e++g+e+  g ++++
  KKY21711.1 167 LVVIGGGDSAAEEAMFLTKYGSKVIVLVRRDVLR------ASKTMAKRLLAHpKVEVKFNTVAAEVHGEEKqnGlMTHL 239
                 79********************************......*********8888**************777622555555 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00082       1.1       2      23 ..      11      32 ..      10      42 .. 0.91
   2 !    4.8   0.1    0.0099        14       5      34 ..     168     197 ..     165     201 .. 0.91
   3 !    9.3   0.1   0.00043      0.59     107     227 ..     201     328 ..     197     358 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00082
                   EEEEEE--SHHHHHHHHHHHHT CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLsea 23
                   t+V+I+G+Gpa  ++a  Ls+a
     KKY21711.1 11 TKVAIIGSGPAAHTAAVYLSRA 32
                   89*****************997 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0099
                    EEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlvekrs 34 
                    +++G+G + +  a++L+++G +v+++ +r+
     KKY21711.1 168 VVIGGGDSAAEEAMFLTKYGSKVIVLVRRD 197
                    69**********************998875 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00043
                    HHHHHHHHHHHHT.EEETCSEE...EECCEECCCCCCCEEE..ECCTTEEEEEEEE...EEEE--GTT-HHHHHHTGGEEEEEEE...EEEEEEEE CS
  FAD_binding_3 107 leriLvehaeerg.lqvrfkte...vesleqdeegvtaevr..dketgeeetvrak...YlvGaDGgrStvrktlgiefegeetv...yeagvldv 190
                      + +++++ +++ ++v+f+t    v+  e+ ++g  + +r  +  +geee ++a+   Y vG D + S v +++  +  g  ++   + +++++ 
     KKY21711.1 201 ASKTMAKRLLAHPkVEVKFNTVaaeVH-GEEKQNGLMTHLRlkNTVSGEEELIDANglfYAVGHDPATSLVKEQIECDEDGYIKTtpgTSFTSIKG 295
                    567788888888889999988633255.3555666666666448889********8888*****************99666555411156788888 PP

                    EEEC.-SCCCTTCCEEEEECCTTEEEEEECCETEEEEE CS
  FAD_binding_3 191 lfda.dlsdiveplvlilsaesrgvmviPlentlerfy 227
                    +f+a d++d +    +i+sa s+ ++ +  e+    ++
     KKY21711.1 296 VFAAgDVQDKRYR-QAITSAGSGCIAALEAEK----YI 328
                    9999999976666.788888887755444443....44 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.025        34       6      40 ..       9      43 ..       7     137 .. 0.58
   2 !   15.6   0.1   1.2e-05     0.016       5      39 ..     162     196 ..     161     245 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.025
  NAD_binding_7  6 kgkkvlvvGgGevAarkvrklleagakvtvvapev 40
                   +  kv ++G G+ A + +  l +a+ k +++   +
     KKY21711.1  9 RHTKVAIIGSGPAAHTAAVYLSRAELKPVLYEGMM 43
                   56799*************99999999988876665 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.2e-05
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtvvape 39 
                    +++k  +v+GgG+ Aa+ +  l ++g kv+v+  +
     KKY21711.1 162 FRNKPLVVIGGGDSAAEEAMFLTKYGSKVIVLVRR 196
                    68999************************996554 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   7.5e-07     0.001      18      64 ..      11      54 ..       7      61 .. 0.89
   2 ?    1.4   0.0      0.11   1.5e+02      20      49 ..     167     195 ..     161     230 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 7.5e-07
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTTB CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGqlf 64
                + v+i+G+G++  taa yl+++ +lk ++ e  ++  GG+  GGql 
  KKY21711.1 11 TKVAIIGSGPAAHTAAVYLSRA-ELKPVLYEGMMA--GGTAAGGQLT 54
                679*******************.********9876..8899999985 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
                 EEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4  20 vvivGaGssGLtaayylakkpdlkvailer 49 
                 +v++G+G s    a  l+k  + kv++l r
  KKY21711.1 167 LVVIGGGDSAAEEAMFLTKY-GSKVIVLVR 195
                 79999999999999999999.889988765 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   2.8e-05     0.039       1      38 [.      15      56 ..      15      74 .. 0.78
   2 ?    3.7   0.0     0.051        71       1      29 [.     169     197 ..     169     208 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.8e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-S....SSSSSGGG-EE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllek....rdrlGGraasy 38
                   I+G+G ++ +aA +L++a ++ +l+e     ++  GG++++ 
     KKY21711.1 15 IIGSGPAAHTAAVYLSRAELKPVLYEGmmagGTAAGGQLTTT 56
                   9************************95333345566666665 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.051
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrd 29 
                    ++G+G s++  A +L+k+g +v +l +rd
     KKY21711.1 169 VIGGGDSAAEEAMFLTKYGSKVIVLVRRD 197
                    8********************99986665 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.013        18      11      39 ..       9      37 ..       4      39 .. 0.87
   2 ?   -0.8   0.0       1.1   1.5e+03      74      87 ..     120     133 ..     116     143 .. 0.84
   3 !    9.7   0.0   0.00063      0.87      10      60 ..     162     213 ..     153     229 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.013
                  TT-EEEEES-SHHHHHHHHHHHCCT-CEE CS
  Shikimate_DH 11 kekkvlliGaGemaelvakhLlakgvkkv 39
                  ++ kv +iG G  a+ +a +L+++++k v
    KKY21711.1  9 RHTKVAIIGSGPAAHTAAVYLSRAELKPV 37
                  6789******************9988865 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.1
                   HT-SEEEE-SSSSS CS
  Shikimate_DH  74 aeadvvisatasee 87 
                   + ad vi+at+++ 
    KKY21711.1 120 HTADAVIIATGANA 133
                   689*******9976 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00063
                   .TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHH.HHHHHT.ET CS
  Shikimate_DH  10 lkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerake.laeelkgee 60 
                   +++k  ++iG G  a + a  L + g k +v + R++ ra++ +a++l ++ 
    KKY21711.1 162 FRNKPLVVIGGGDSAAEEAMFLTKYGSKVIVLVRRDVLRASKtMAKRLLAHP 213
                   5678899******************************999652677775554 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.31   4.3e+02     190     206 ..       9      25 ..       4      38 .. 0.68
   2 !    8.7   0.0   0.00061      0.84     188     224 ..     161     195 ..      75     207 .. 0.64
   3 ?    4.0   0.0     0.017        23     112     161 ..     216     266 ..     206     282 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.31
  K_oxygenase 190 akkriaVvGsGqSaaei 206
                  ++ ++a++GsG  a   
   KKY21711.1   9 RHTKVAIIGSGPAAHTA 25 
                  56788888888766443 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00061
  K_oxygenase 188 llakkriaVvGsGqSaaeifedllrrqkkvelklvtr 224
                    ++k ++V+G+G Saae ++ l++  +  ++ +++r
   KKY21711.1 161 IFRNKPLVVIGGGDSAAEEAMFLTKYGS--KVIVLVR 195
                  5678889***********9988877655..4444444 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.017
  K_oxygenase 112 qvrfgeeveevepdeeeee..elltveskdaegeeeelearnlvlgvGtepk 161
                  +v+f++   ev+ +e+++   ++l++++ + +geee + a+ l  +vG  p+
   KKY21711.1 216 EVKFNTVAAEVHGEEKQNGlmTHLRLKN-TVSGEEELIDANGLFYAVGHDPA 266
                  5889999999999988877666677775.58999999999999999998886 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1    0.0018       2.5       1      44 [.      12      62 ..      12     103 .. 0.72
   2 ?   -0.8   0.0      0.46   6.3e+02     140     161 ..     121     142 ..     115     151 .. 0.73
   3 ?    4.5   0.1     0.011        15       2      28 ..     167     193 ..     166     212 .. 0.84
   4 ?    2.5   0.1     0.045        62     352     389 ..     290     329 ..     279     332 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0018
                CEEEE-SSHHHHHHHHHHHHTT--EEEE.......ES-GGGTT--SSSSEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi.......thkldtiaelsCnpsi 44
                +v +iG G A   AA+ ++r+ +k +L+       t   +++ +    +++
  KKY21711.1 12 KVAIIGSGPAAHTAAVYLSRAELKPVLYegmmaggTAAGGQLTTTTDIENF 62
                699************************988888884444444444444444 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.46
                 EECEEEE--TT-BT-EEEETTE CS
        GIDA 140 kakavviatGtflkgkihigek 161
                 +a+av+iatG+  +    +ge+
  KKY21711.1 121 TADAVIIATGANARRLGLTGED 142
                 6789******966655555555 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.011
                 EEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLi 28 
                 ++ViGgG +  e A+ + + G kv+ +
  KKY21711.1 167 LVVIGGGDSAAEEAMFLTKYGSKVIVL 193
                 69**********************987 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.045
                 BSSSBTEEE-CGGGTB-SHHHH...HHHHHHHHHHHHHHHC CS
        GIDA 352 tkkvkgLflAGqinGteGYeEa...aaqGllAGinaarkak 389
                 + ++kg+f+AG++     Y  a   a++G++A++ a ++++
  KKY21711.1 290 FTSIKGVFAAGDVQDKR-YRQAitsAGSGCIAALEAEKYIA 329
                 56799*********998.866522167*******9998876 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.5     0.024        33       1      33 [.      12      45 ..      12      57 .. 0.80
   2 ?    5.1   0.0     0.011        15     151     207 ..      77     136 ..      69     146 .. 0.57
   3 ?    2.3   0.1     0.073     1e+02       2      32 ..     167     199 ..     166     216 .. 0.81
   4 ?   -0.7   0.0      0.59   8.1e+02     151     203 ..     204     258 ..     197     320 .. 0.60

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.024
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiag 33
                +v+iiG+G +  ++A +L+r+    +l+e    ag
  KKY21711.1 12 KVAIIGSGPAAHTAAVYLSRAElkPVLYEGM-MAG 45
                59****************9987777777766.555 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.011
                 HHHHHHHHTT-EEEESECEEEEEEEE..TCEEEEE....EECT.EEEEEEEEEEE--GGGHHHH CS
         DAO 151 alaraaealGveilegtevtgleeed..gkvwgve....rttp.gendaadavVnaaGawsdll 207
                  + ++ e+ G e++++ ++ +++ ++   k+w+      +++p +   +adav++a+Ga ++ l
  KKY21711.1  77 NMKAQSERFGTEVITE-TIARVDLKSkpFKLWREWedgpDDAPaH---TADAVIIATGANARRL 136
                 5555566666677776.3333433221223344334434333323...58**********9954 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.073
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSST CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekgdia 32 
                 +v+iGGG   +  A++L++ g  V++l ++d +
  KKY21711.1 167 LVVIGGGDSAAEEAMFLTKYGskVIVLVRRDVL 199
                 59*****************999*7777777554 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.59
                 HHHHHHHHTT.-EEEESECEEEE...EEEETCEEEEE..EECTEEEEEEEEEEE--GGG CS
         DAO 151 alaraaealG.veilegtevtgl...eeedgkvwgve..rttpgendaadavVnaaGaw 203
                  +a+++ a+  ve+ ++t + ++   e+++g  ++++  +t +ge+     ++ a+G++
  KKY21711.1 204 TMAKRLLAHPkVEVKFNTVAAEVhgeEKQNGLMTHLRlkNTVSGEE----ELIDANGLF 258
                 5666655553378888866666533133334444444743333543....233333333 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3   0.00019      0.27       2      69 ..      13      80 ..      12     102 .. 0.72
   2 ?   -1.4   0.1      0.81   1.1e+03       2      34 ..     167     199 ..     166     205 .. 0.91
   3 ?    0.9   0.1      0.16   2.2e+02      88     130 ..     201     247 ..     198     257 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00019
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignkaee...qvvtgiareflerlrq 69
                  v ++G+gpa  +AA+   ra  k +L e   + GG++++g ++t +  ++     + ++g   e++e++++
    KKY21711.1 13 VAIIGSGPAAHTAAVYLSRAELKPVLYE-GMMAGGTAAGGQLTTTTDIENFPgfpKGIGG--SELMENMKA 80
                  89***********************987.6788999988877555443322223333333..456666655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.81
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergvl 34 
                   +vV+GGg +    A+   + G kv+++ +r+vl
    KKY21711.1 167 LVVIGGGDSAAEEAMFLTKYGSKVIVLVRRDVL 199
                   69******9999999999999999999888876 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.16
  FAD_oxidored  88 vakavleemlaeagvtvllntrlvevekegkr...iesvtveske.g 130
                   + k++++ +la ++v+v +nt++ ev+ e+k+   ++++++++   g
    KKY21711.1 201 ASKTMAKRLLAHPKVEVKFNTVAAEVHGEEKQnglMTHLRLKNTVsG 247
                   5688999999*************999997633345777777655444 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.1    0.0017       2.3       2      37 ..      13      47 ..      12      55 .. 0.85
   2 ?    2.5   0.1     0.046        64       3      37 ..     168     202 ..     167     218 .. 0.86
   3 ?   -1.5   0.0      0.73     1e+03     145     198 ..     203     260 ..     200     285 .. 0.72
   4 ?   -0.1   0.0      0.27   3.8e+02     390     406 ..     291     307 ..     252     318 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0017
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgga 37
                   v +iGsG A  +AA+ +++a lk ++ e + + gg+
     KKY21711.1 13 VAIIGSGPAAHTAAVYLSRAELKPVLYEGMMA-GGT 47
                   89********************9999998877.444 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.046
                    EEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSG CS
  FAD_binding_2   3 iViGsGlAGLaAAleaaeaGlkvavvekeqefgga 37 
                    +ViG+G +    A+ +++ G kv+v+   ++ + +
     KKY21711.1 168 VVIGGGDSAAEEAMFLTKYGSKVIVLVRRDVLRAS 202
                    9************************9887776664 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.73
                    HHHHHHHHTCT.EEEEESEEEEEEEEC...TTEEEEEEEEETTTTCEEEEEESEEEE- CS
  FAD_binding_2 145 arlvesarkag.vdfqerteadeLive...dgrvtGavvenpesgrevrirakavvla 198
                    +++++++++++ v++ ++t a+e+  e   +g +t   ++n  sg+e+ i a+++  a
     KKY21711.1 203 KTMAKRLLAHPkVEVKFNTVAAEVHGEekqNGLMTHLRLKNTVSGEEELIDANGLFYA 260
                    5788999999999999999999995542223356666666667777777777766555 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.27
                    ESSBTEEE-STCEESSS CS
  FAD_binding_2 390 qpipGLYAaGevaaggv 406
                    + i+G +AaG v    +
     KKY21711.1 291 TSIKGVFAAGDVQDKRY 307
                    689*******9975555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.49
# Mc/sec: 2231.08
//
Query:       KKY21712.1  [L=192]
Description: hypothetical protein UCRPC4_g03479 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.50
# Mc/sec: 1149.97
//
Query:       KKY21713.1  [L=128]
Description: putative nadh-ubiquinone oxidoreductase 12 kda [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.023   15.2   0.0      0.026   15.0   0.0    1.1  1  NDUFB10   NADH-ubiquinone oxidoreductase subunit 10
       0.12   13.1   0.0       0.21   12.3   0.0    1.4  1  HWE_HK    HWE histidine kinase


Domain annotation for each model (and alignments):
>> NDUFB10  NADH-ubiquinone oxidoreductase subunit 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0     3e-06     0.026      30      92 ..      18      80 ..       2      96 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3e-06
                XXXXXS-SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSS--HHHHHHHH CS
     NDUFB10 30 ptideCatddlvClyeaemqykrDkkvdqeilkilrerleeCeqyeeedseekCkkllkeyee 92
                pt ++   +++  l++a     r++ v   + +++re + +C ++e++++ ekC +  ++y +
  KKY21713.1 18 PTFQDVDFSNNEALVNARDAVVREQWVKIMMARLVREEMGKCYVREGNNHLEKCGRYRERYLQ 80
                56666666777777788888889999999999999*******************999998855 PP

>> HWE_HK  HWE histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.4e-05      0.21      40      70 ..      30      60 ..      28      71 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.4e-05
                HHHHHHHHHHHCTTS-EEHHHHHHHHHHHHH CS
      HWE_HK 40 ALsaahdllsreewagaeLaelleeelapye 70
                AL +a d ++re+w ++++a+l++ee+ ++ 
  KKY21713.1 30 ALVNARDAVVREQWVKIMMARLVREEMGKCY 60
                999***********************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.48
# Mc/sec: 794.61
//
Query:       KKY21714.1  [L=303]
Description: putative epoxide hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-25   88.6   0.1    5.8e-25   87.8   0.1    1.5  1  EHN       Epoxide hydrolase N terminus


Domain annotation for each model (and alignments):
>> EHN  Epoxide hydrolase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.1   3.2e-29   5.8e-25       1     105 [.      14     126 ..      14     129 .. 0.83

  Alignments for each domain:
  == domain 1  score: 87.8 bits;  conditional E-value: 3.2e-29
         EHN   1 vrpfkisvpqeelddlkkrleltrl.....peeeaeeee.ewee.GvtkdelkelldyWkeeydWraeearlnsfpqfktei....dgldihFihlrsa 88 
                 ++pf+i+++ + l+dlk+ ++l+ +     ++++a+  + + e+ G++ ++l++++d+W + ydW++ e+ +n+fp+fk++i     ++d+hF+ l+s+
  KKY21714.1  14 IKPFEINIQPKVLNDLKDSIKLSAFapltyESSTAD--PkDLESfGISYEWLQKARDAWLT-YDWKKSESYINTFPHFKASIrhnvADFDVHFVGLFSE 109
                 69********************96543321333233..2444455***************9.******************99532235**********9 PP

         EHN  89 kpdaiPllllhGWPgsf 105
                 +++aiP++ lhGWP ++
  KKY21714.1 110 RKNAIPIVYLHGWPVNA 126
                 **************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2082.67
//
Query:       KKY21715.1  [L=423]
Description: hypothetical protein UCRPC4_g03482 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.5e-15   54.7   0.2    8.5e-15   54.7   0.2    2.6  2  Hva1_TUDOR   Hypervirulence associated proteins TUDOR domain


Domain annotation for each model (and alignments):
>> Hva1_TUDOR  Hypervirulence associated proteins TUDOR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.3      0.81   1.5e+04      27      36 ..     326     336 ..     319     337 .. 0.46
   2 !   54.7   0.2   4.7e-19   8.5e-15       1      59 []     362     420 ..     362     420 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.81
  Hva1_TUDOR  27 akg.vtvnask 36 
                 + +  ++na++
  KKY21715.1 326 KSDtGKKNANE 336
                 22234556655 PP

  == domain 2  score: 54.7 bits;  conditional E-value: 4.7e-19
  Hva1_TUDOR   1 GdrVswkwggGestGkVeevltedteakgvtvnaskddPryeiendntGkevahkesel 59 
                 G +V+w+++ G+++G+V+e+l +d++++g++v+a k+dPr+++ +d+ Gk ++hk++ +
  KKY21715.1 362 GNKVQWRAMRGWVKGEVTEILVSDKKVDGKDVKALKQDPRIVLNSDSRGKICVHKPDSI 420
                 899*****************************************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1708  (0.0952647); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                       123  (0.00686039); expected 17.9 (0.001)
Passed Fwd filter:                        46  (0.00256568); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.07u 0.38s 00:00:01.45 Elapsed: 00:00:00.59
# Mc/sec: 2163.14
//
Query:       KKY21716.1  [L=565]
Description: putative endoplasmic oxidoreductin-1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.2e-130  433.8   0.0   6.4e-130  433.5   0.0    1.1  1  ERO1      Endoplasmic Reticulum Oxidoreductin 1 (ERO1)


Domain annotation for each model (and alignments):
>> ERO1  Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.5   0.0  3.6e-134  6.4e-130       2     354 .]      54     455 ..      53     455 .. 0.95

  Alignments for each domain:
  == domain 1  score: 433.5 bits;  conditional E-value: 3.6e-134
        ERO1   2 lrplLkeLvk.tdfFryfkvnld.keCpfweddeglCanraCavee.ceeeeiPekwraeelsklertls......................eeeesav 75 
                 l p+Lk++++ tdfF+y+++nl+ k Cpfw+d+++lC+nraCav++ ++ e+iP  wraeelskle  ++                      +  es+v
  KKY21716.1  54 LAPTLKDITQnTDFFSYYRLNLYnKVCPFWTDEHSLCGNRACAVDTlENVEDIPLIWRAEELSKLEGATAghptrekqkqrpqkplqgklgeDVGESCV 152
                 7899*****99************999********************88889****************999*********************9999**** PP

        ERO1  76 keakeeeeaeeedyceledeeeee.avyvdLlenperfTgYkGesaervWkaiYeencfkeeseseese.............................. 143
                 +e+++e+  +e+dyc+++de ++  ++yv+L++n erfTgY+G  a++vW+aiY+encf++  ++++++                              
  KKY21716.1 153 VEYDDEC--DERDYCVPDDEGATGkGDYVSLVNNTERFTGYAGAGASQVWDAIYKENCFSRPGTQSSAAnvffpvpakeaaddlrhvfqeygrqhvddq 249
                 **99999..668********99888**********************************887666555589**************************98 PP

        ERO1 144 .ekeleelclekrvfyrliSGlhasisihlaaeylnqetgewepnlelfkervgkhperlenlYfnyalvlrAvaklapyleelefstgeeeedeetke 241
                     l+++cle+r+fyr++SG+hasis+hl++ey+nq+tgew pn++++ker++++p r++n+Yfnya+++rA++kl+ y+++++f++g++ +d++tk+
  KKY21716.1 250 eVYPLDDECLEQRAFYRVVSGMHASISAHLCWEYFNQSTGEWFPNVDCYKERLHNYPGRVSNVYFNYAILTRAMVKLRTYIQSYTFCSGDPIQDQDTKT 348
                 87889********************************************************************************************** PP

        ERO1 242 llkeelakellsalsskekafdesklfkdkeeaeelkeefrerfrnisrimdCVgCekCrLwGKlqttGlgtAlkilfeeeekeeekklkLernevvAL 340
                 ++   +     ++++ ++++fdes lf+ + e  +lke+f++rfrn+srimdCVgC+kCrLwGKlqt+G+g Alkilfe +e+++ ++  L+r+e+vAL
  KKY21716.1 349 KVMGLI-----DQAAAAPSTFDESLLFH-DGEGLALKEDFKNRFRNVSRIMDCVGCDKCRLWGKLQTAGYGAALKILFEFDENKNGENPLLRRTELVAL 441
                 *66655.....44445678*********.79****************************************************9999************ PP

        ERO1 341 intlerlseSieav 354
                 +nt+ r+s+S++a+
  KKY21716.1 442 VNTFGRVSHSLAAI 455
                 **********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.50
# Mc/sec: 3424.03
//
Query:       KKY21717.1  [L=1087]
Description: putative morphogenesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.6e-173  577.9   0.0   2.4e-173  577.3   0.0    1.3  1  DUF1708         Domain of unknown function (DUF1708)


Domain annotation for each model (and alignments):
>> DUF1708  Domain of unknown function (DUF1708)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  577.3   0.0  1.3e-177  2.4e-173       2     431 .]      45     524 ..      44     524 .. 0.97

  Alignments for each domain:
  == domain 1  score: 577.3 bits;  conditional E-value: 1.3e-177
     DUF1708   2 vereevkelihliteelKargldtpfllLpFrpesdpsalrtflrnfFpkgqeegsslkgeellqelrktdiltLisvlkylWsrlpggvvgwdaYeeF 100
                 +++eev el++ +t elKar+l++pfllLpFrp+sdpsa+r+f+rn+F+   + +++l+ge+l+qelr+t++++L sv+k++Wsrlpggvv+wd+Ye F
  KKY21717.1  45 IHPEEVAELVRGCTVELKARALNMPFLLLPFRPTSDPSATRAFIRNYFSP-LSGRNPLRGEALMQELRLTEPMVLASVMKWCWSRLPGGVVTWDSYELF 142
                 5799*********************************************6.55689******************************************* PP

     DUF1708 101 kkkEkeselprdaFltfipkslssearasivydFldLlvaiaahgkknglggrklsrlaglwAFehkdkgnsfeeglkswskaadAlshLflayLrsll 199
                 k++E++s+++rdaF+tfip+s++s+ar++i++dF+dLl+aiaahgk+nglggrklsr ag+wAFe+ d+g++fe g++sw++aadA+shLf+ayLrsl+
  KKY21717.1 143 KVGENDSNFARDAFSTFIPISVDSDARTQIIFDFFDLLSAIAAHGKNNGLGGRKLSRFAGWWAFEQVDSGKGFEPGYRSWERAADATSHLFFAYLRSLS 241
                 *************************************************************************************************** PP

     DUF1708 200 pekeketeg.sklprsLqkllqeteYPPekstllqsstlltvplvvlivdkvsptpfaLLrrakktlkfdnkdaFeareddalLkelfkeledivkals 297
                 pe++k t+g  klp sLq llq+teYPPe +tl+ +++    ++vv+ivd+vsptpfaLLrr+k+         Fe+r +d+ L++++ +++d+v+al+
  KKY21717.1 242 PESSKATNGyLKLPLSLQGLLQQTEYPPEPPTLMFNES----TKVVMIVDTVSPTPFALLRRVKN---------FEYRASDRDLQQFS-QYDDPVHALT 326
                 *********9************************9999....9**********************.........**************.********** PP

     DUF1708 298 eeskrvlkaissanqsq.ss...stsledaswsrfkdigfeagleeee...............................rpttpsWadflssgl..... 356
                 +e++rvl++iss+nqs  s+   st+l+daswsrf+digf   l+++e                               rpttpsWadfls+g+     
  KKY21717.1 327 DECRRVLRSISSSNQSDiSKasdSTGLKDASWSRFEDIGFGGPLDDTEsenggaygssmnrdrptglsrspnsrtndlgRPTTPSWADFLSTGFtddqn 425
                 ****************9855678******************99855333689*********************************************** PP

     DUF1708 357 .........................kssqsdkkelelkeelepgelasvsrvdiddyFiwvWlsslsseetsekkalfGrslvieteikgfkkWlvvee 430
                                          +ssqs++++ e++++l pgelas+++vd+dd+F+wvW+ssl+ ee++++ka+fGr+++iet i+g +kWl++ee
  KKY21717.1 426 qrspaplllppdkvlppintvtqrgHSSQSHRRNPEAESDLGPGELASITKVDLDDSFWWVWISSLAGEEPTSRKAVFGRCALIETVIPG-TKWLIMEE 523
                 *************************99***************************************************************.*******9 PP

     DUF1708 431 q 431
                 q
  KKY21717.1 524 Q 524
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1087 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:00.53
# Mc/sec: 6210.53
//
Query:       KKY21718.1  [L=1578]
Description: putative amidohydrolase 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-57  194.3  44.1    1.5e-54  185.3  46.8    2.4  2  MFS_1         Major Facilitator Superfamily
    6.2e-20   71.2  17.7      1e-19   70.5  17.7    1.3  1  TRI12         Fungal trichothecene efflux pump (TRI12)
      4e-15   55.6  11.1      4e-15   55.6  11.1    3.7  4  Sugar_tr      Sugar (and other) transporter
      8e-15   55.3   0.4    2.5e-10   40.4   0.0    2.3  2  Amidohydro_3  Amidohydrolase family
    7.6e-12   45.2   0.0    4.6e-10   39.3   0.0    2.6  2  Amidohydro_1  Amidohydrolase family
    0.00018   20.2  37.2    0.00023   19.8   9.1    3.5  4  MFS_2         MFS/sugar transport protein
  ------ inclusion threshold ------
       0.21   11.4   2.0          2    8.2   0.4    2.4  2  Coilin_N      Coilin N-terminus
       0.22    9.8  19.4        1.3    7.2   1.8    4.2  4  OATP          Organic Anion Transporter Polypeptide (OATP) fa
       0.57   11.1   4.5        1.3   10.0   4.5    1.5  1  DUF1764       Eukaryotic protein of unknown function (DUF1764


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.3  46.8   7.7e-58   1.5e-54       1     352 [.      91     490 ..      91     491 .. 0.87
   2 ?    3.9   0.0     0.011        21     140     230 ..     544     668 ..     539     673 .. 0.56

  Alignments for each domain:
  == domain 1  score: 185.3 bits;  conditional E-value: 7.7e-58
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlg 98 
                 l++a+fl+al+++i+++alp ++a+++ +s + + ++ ++y l++a+a++ +G +sd fGr+++ll++ ++f +g+l++++ s++  +l+ +rvlqG+g
  KKY21718.1  91 LCIALFLAALDMTIITTALP-TIATEFDASDADYTWVGSAYLLACAAAVPAWGKFSDIFGRKPMLLACNVIFMAGSLFCAL-STSIhMLIGARVLQGIG 187
                 689*****************.******************************************************788887.67777************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee......... 188
                 +g+l+ ++++ ++d+f+ +erg++ig++++ +++++++gp+lgg++a+ + Wr++fyi+ ++  +++++  ++l    p+ + +++ +           
  KKY21718.1 188 GGGLIILVNICVSDLFSLRERGKYIGIMGMVWAIASAVGPVLGGVFAEKVTWRWCFYINLPLDGFSVIMLTFFLKIHTPKTPLVAGLKAIdwlgvllvv 286
                 ********************************************************************999**************99999********* PP

       MFS_1 189 ..........................................kgtgpaplvpawkallkdpvl..w.......illialllfffgfsglltllplylqe 236
                                                                       k  + +     +       ++l+++++ +f+f +++++lply+q+
  KKY21718.1 287 ggvvmfllglesggvthpwdsayticltvfgvvtigvfflveW-----------KVAKYPVIPirLfqsrtrcACLLTAFCHGFVFIAASYYLPLYFQT 374
                 ***********88888888888888888888744444444433...........5555554222313344456799*********************** PP

       MFS_1 237 vlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt...ssavllllvlvliGfglgfvfpsllalasdlappe 332
                 vlg +  ll+g++   +al   i + +ag +++++g+  + +l+ +++++++lg+ l+ +     s + ++l+ +++G+g+g  f s l++++  + p+
  KKY21718.1 375 VLGAT-PLLSGVYTFPFALSLSICSACAGIIIKKTGK--YQILIWGGMIIMTLGFGLFINLqpyASWPRIILFQIIAGIGVGPNFQSPLVALQTTIKPS 470
                 *****.68888777777777777799*********99..66666666666666666666663224444444477779********************** PP

       MFS_1 333 eagtasglfntagslggalg 352
                   +ta++ f+++++++++l+
  KKY21718.1 471 DIATATATFGFVRQIATSLS 490
                 ****************9986 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.011
       MFS_1 140 lggllasslgWravfyilaivsllafvlfllll...................peepperkrkspkeee............................... 188
                 ++ +++ssl   ++fy + +++ ++f    +++                                  e                               
  KKY21718.1 544 VAEVITSSLQKMWIFYTAMGALGIFFS---FFIgkkvlsrevqthkqgleaeE--------------Earqerltekkakkeakedkkrrhtssqqmek 625
                 666777777777888888888888755...56655565555555555544330..............14444444444445555555566666655555 PP

       MFS_1 189 ......kgtgpaplvpawkallkdpvlwillialllfffgfsglltll 230
                       ++  + +++ + + +++++    +l  ++l++++f ++ ++l
  KKY21718.1 626 dglpqySRIDELAVK-LRRRVRRSR----ALKLVALGCLVFVAYAQWL 668
                 555554333333333.588888888....4444444444555555554 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5  17.7     5e-23     1e-19      49     317 ..      91     353 ..      71     555 .. 0.83

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 5e-23
       TRI12  49 fslnvvatyfvlqasasalpnilqdvgqsens.slfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaag 146
                 + + +  + + +   ++alp i  +   s+ + + + + + +  a ++   g+++d fgr+p++++  ++ + g++  + +t +  l+ a  l g+  g
  KKY21718.1  91 LCIALFLAALDMTIITTALPTIATEFDASDADyTWVGSAYLLACAAAVPAWGKFSDIFGRKPMLLACNVIFMAGSLFCALSTSIHMLIGARVLQGIGGG 189
                 444444445556667899*****99999987625567889999999**************************************************987 PP

       TRI12 147 p.agasplfvgelms..nktkflgllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaqlhgkkvrkreelakldwi 242
                        + v +l+s  ++ k++g++ +   ++  s+++p lg  +a + +wrw fyi + +   +v+++        f ++h  k+     l  +dw+
  KKY21718.1 190 GlIILVNICVSDLFSlrERGKYIGIMGMV-WAI-ASAVGPVLGGVFAEKVTWRWCFYINLPLDGFSVIMLT------FFLKIHTPKTPLVAGLKAIDWL 280
                 615568899****9833567899987653.344.4569*************************99998765......3789****************** PP

       TRI12 243 giilvivgvslfllgvswggkpnspwnsakviglissglgslvvfalyevygkpvrpivppalfkdtrgfvcill 317
                 g++lv+ gv +fllg+  gg    pw+sa  i l   g+ ++ vf l e +   + p++p  lf+      c+l 
  KKY21718.1 281 GVLLVVGGVVMFLLGLESGGV-THPWDSAYTICLTVFGVVTIGVFFLVE-WKVAKYPVIPIRLFQSRTRCACLLT 353
                 *****************9996.68***********************99.567889********98777777664 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6  11.1     2e-18     4e-15      42     190 ..     117     259 ..      65     265 .. 0.88
   2 ?   -0.7   6.7      0.24   4.9e+02     319     402 ..     283     365 ..     277     394 .. 0.75
   3 ?    1.2   7.4     0.065   1.3e+02      48     117 ..     383     453 ..     373     463 .. 0.79
   4 ?   -2.4   0.2      0.79   1.6e+03     408     436 ..     547     573 ..     541     587 .. 0.60

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 2e-18
                 HH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHH CS
    Sugar_tr  42 eessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalv 140
                 ++s+ +++++ s++l+ +++     g+++d+fGRk+ ll+++v+f++g++ +a+++   s+ +li +Rvl Gig G+  +lv + +s +   + Rg+ +
  KKY21718.1 117 DASDADYTWVGSAYLLACAAAVPAWGKFSDIFGRKPMLLACNVIFMAGSLFCALST---SIHMLIGARVLQGIGGGGLIILVNICVSDLFSLRERGKYI 212
                 3378999*************************************************...**************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGG CS
    Sugar_tr 141 slyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllf 190
                 ++  + +++   v+ ++g ++++      wr+ ++++l +  + +i+l+f
  KKY21718.1 213 GIMGMVWAIASAVGPVLGGVFAEKVT---WRWCFYINLPLDGFSVIMLTF 259
                 ********************999888...*********999998888766 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 319 llllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanfli 402
                 ll++G+++m+++ +  g+v++++ ++ +    v+ v ++ +++l ++ ++  p v+   lf++++R ++l  a++  +++  + 
  KKY21718.1 283 LLVVGGVVMFLLGLESGGVTHPWDSAYTICLTVFGVVTIGVFFLVEWKVAKYP-VIPIRLFQSRTRCACLLTAFCHGFVFIAAS 365
                 68899999999999999********9755555555666666666688899999.999*****************9999875443 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.065
                 HHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHH.HHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHH CS
    Sugar_tr  48 sglivsiflvGaiiGslfagllgdrfGRkkslli.aavlfvigavlqaaakgknsvevlivgRvlvGigvG 117
                 sg+ +  f +   i s  ag+++++ G+ ++l+  + +++  g  l +  + + s+  +i+ ++++GigvG
  KKY21718.1 383 SGVYTFPFALSLSICSACAGIIIKKTGKYQILIWgGMIIMTLGFGLFINLQPYASWPRIILFQIIAGIGVG 453
                 566666677777899999*********9999999444555556555565666799***************9 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 0.79
                 HHHCHHHT-HHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 408 iiteaigggyvflvfaglavlfiifvfff 436
                 +it++++  ++ ++++++ +l+i+f ff 
  KKY21718.1 547 VITSSLQ--KMWIFYTAMGALGIFFSFFI 573
                 6677777..44455555555555555553 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   3.2e-05     0.064       2      39 ..     783     818 ..     782     851 .. 0.76
   2 !   40.4   0.0   1.2e-13   2.5e-10     408     469 ..    1088    1143 ..    1053    1146 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.2e-05
  Amidohydro_3   2 viDakGrlvlPGFvDsHtHlagggvnl.rllrlpdarvt 39 
                   v Da Gr +++G +D+H+H   +gv+    lr ++++  
    KKY21718.1 783 VFDAGGRQLTAGIIDMHSH---AGVDSlPDLRGGEDTNE 818
                   79*****************...66666666666665555 PP

  == domain 2  score: 40.4 bits;  conditional E-value: 1.2e-13
  Amidohydro_3  408 lsleealalyTrgpAkalgledrkGtLevGadADlvvldadpldvdppelaearvrltvvdG 469 
                    l++++ala +T+ pA++lgl++r G +++G+dADlvv+d+dpl+v ++      + ++++dG
    KKY21718.1 1088 LPYHAALAGVTTAPAELLGLQERIGKVKPGFDADLVVWDDDPLAVAAT------PIQVWIDG 1143
                    8999*******************************************9......99999999 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.028        55       2      16 ..     791     805 ..     791     835 .. 0.77
   2 !   39.3   0.0   2.3e-13   4.6e-10     150     341 ..     978    1143 ..     968    1214 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.028
                   EEE-EEEEEEECETT CS
  Amidohydro_1   2 vlPGlIDaHvHleqs 16 
                   +++G+ID+H H+  +
    KKY21718.1 791 LTAGIIDMHSHAGVD 805
                   689********9644 PP

  == domain 2  score: 39.3 bits;  conditional E-value: 2.3e-13
                    EEETSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEE.......HHHHHHHHSEHHHHHHHHHHH CS
  Amidohydro_1  150 iHaletkgevedaeaafgetiehgthlevaeslglldeiklilahgvhltpteaellkerlkeagva.......hcpfsnsilrsgrealrkald 237 
                    +H+  + ++++d ea   +t e+++ ++            +  ah ++l p+   +lk++  ++  a       ++ +++ +++s+  a + + +
    KKY21718.1  978 VHINTHCYTIADLEAFVRHTNEFKFSVRA-----------FHHAHQTYLVPE---VLKRAWGGHPPAaalfadnMYYKTEAYIGSEQ-AGKILYE 1057
                    55555566666666666655555444444...........334666777766...66666555555566666668888899999988.5566667 PP

                    HTSCEEEEEECT..TSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCT CS
  Amidohydro_1  238 eGvkvglgtDga..asgnslnlleelrlalklqrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaafvglkk 330 
                    +G+  ++++D+   ++ +   ++ e + a+           ++gl++  al+ +T+ +A+ lgl +++G++++G+dADlvv+d d+      l+ 
    KKY21718.1 1058 NGLTPVFVSDNPvlNAQH---VVFEAAKAY-----------QYGLPYHAALAGVTTAPAELLGLQERIGKVKPGFDADLVVWDDDP------LAV 1132
                    799999999966443333...335677777...........999**************************************9965......344 PP

                    SEEEEEEEETT CS
  Amidohydro_1  331 dgnvkkvivkG 341 
                    + ++++v+++G
    KKY21718.1 1133 AATPIQVWIDG 1143
                    44455555544 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   7.0   3.7e-06    0.0075     229     375 ..      91     228 ..      68     241 .. 0.85
   2 ?    0.3   1.6     0.097   1.9e+02     294     336 ..     279     329 ..     250     333 .. 0.80
   3 !   19.8   9.1   1.2e-07   0.00023     232     343 ..     349     467 ..     340     500 .. 0.72
   4 ?   -3.7   0.1       1.6   3.1e+03     167     191 ..     552     572 ..     515     588 .. 0.51

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.7e-06
       MFS_2 229 llllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfg 327
                 l ++ +laal +++  ++l   +t +  ++++++++  +  ++ ++++p w ++   +g+k + l++ ++ +++++++ l   +++ +++ + v+ g+g
  KKY21718.1  91 LCIALFLAALDMTIITTALPTIATEFDASDADYTWVGSAYLLACAAAVPAWGKFSDIFGRKPMLLACNVIFMAGSLFCALS--TSIHMLIGARVLQGIG 187
                 4455567888999999999999999999***********************************************999888..9*************** PP

       MFS_2 328 vgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglg 375
                  g++ +l+   ++d++   e       +g + ++ +++  +a+++g +
  KKY21718.1 188 GGGLIILVNICVSDLFSLRE-------RGKYIGIMGMVWAIASAVGPV 228
                 **************998766.......666666666666666666655 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.097
       MFS_2 294 lgalltivllvlvlll........qpsnlllflvllviagfgvgvaallpw 336
                 +  +l++v++v+++ll        +p++ + ++ l+v + +++gv++l+ w
  KKY21718.1 279 WLGVLLVVGGVVMFLLglesggvtHPWDSAYTICLTVFGVVTIGVFFLVEW 329
                 667889999999999999999999888888777777766666666766655 PP

  == domain 3  score: 19.8 bits;  conditional E-value: 1.2e-07
       MFS_2 232 lfllaalalgvlnglllY....yltyvlgngsaasvfllvvtisal.lgiplwqplakrlgkkntyllgalltivllvlvlll..qpsnlllflvllvi 323
                 ++ll+a++ g+ + ++ Y    y++ vlg+    s +++++++++l + ++++  + k+ gk+++ ++g ++ + l++++++   + +++   +++++i
  KKY21718.1 349 ACLLTAFCHGFVFIAASYylplYFQTVLGATPLLSGVYTFPFALSLsICSACAGIIIKKTGKYQILIWGGMIIMTLGFGLFINlqPYASWPRIILFQII 447
                 344444444444444444122279*****888888888888777777*********************9999999988888888788888889999*** PP

       MFS_2 324 agfgvgvaallpwsmladvv 343
                 ag+gvg  +  p   l +++
  KKY21718.1 448 AGIGVGPNFQSPLVALQTTI 467
                 *****997777766665555 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 1.6
       MFS_2 167 erkgylifaliialLmllgviivvl 191
                  +k ++ +++++a    lg++++++
  KKY21718.1 552 LQKMWIFYTAMGA----LGIFFSFF 572
                 3333333333333....33333322 PP

>> Coilin_N  Coilin N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.4     0.001         2      77     123 ..     582     625 ..     543     633 .. 0.61
   2 ?    1.7   0.1       0.1     2e+02      25      49 ..     982    1008 ..     977    1018 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.001
    Coilin_N  77 legsetkleaqesededsresasksasttkqkkkkKrekkqeeqdeq 123
                 +++++++lea+e  +++++   +k +++++ k+ kKr++++++q e+
  KKY21718.1 582 VQTHKQGLEAEE--EARQERLTEK-KAKKEAKEDKKRRHTSSQQMEK 625
                 445555555553..2222222222.2333333344444434444433 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.1
    Coilin_N   25 esckvvkdLaqhirkl..Fklkrpsil 49  
                  ++c +++dL+  +r++  Fk++ ++++
  KKY21718.1  982 THCYTIADLEAFVRHTneFKFSVRAFH 1008
                  7999*********98622666655444 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.4    0.0018       3.6       2      85 ..      87     170 ..      86     179 .. 0.88
   2 ?    7.2   1.8   0.00068       1.3     131     193 ..     173     235 ..     168     247 .. 0.92
   3 ?    2.2   3.5     0.021        42     283     358 ..     334     408 ..     327     432 .. 0.81
   4 ?    3.7   0.0    0.0074        15     216     273 ..     556     621 ..     441     667 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0018
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
        OATP   2 flvllsllglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggr.ghrPrwigigallmalgslllal 85 
                  ++ l+++ ++ a+  +++ +++ ti  +F+ + +   ++ s++ +++++++   + f +  g++P ++++ +++ma + + +al
  KKY21718.1  87 IILSLCIALFLAALDMTIITTALPTIATEFDASDADYTWVGSAYLLACAAAVPAWGKFSDIfGRKPMLLACNVIFMAGSLF-CAL 170
                 57899*****************************************************998899***********985443.333 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00068
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 131 lvllfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllk 193
                  + +++ a +l+GiG+  ++ l    + D  + ++   y+gi+ +++++  a+G +lG+++++
  KKY21718.1 173 SIHMLIGARVLQGIGGGGLIILVNICVSDLFSLRERGKYIGIMGMVWAIASAVGPVLGGVFAE 235
                 4668999****************************************************9875 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.021
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 283 fpkalkrllknpifllvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkkl 358
                  p +  rl+++++ +  +l++ ++ +++++ + +lp y +t  + ++  + ++t ++++  ++    ++G+++kk 
  KKY21718.1 334 YPVIPIRLFQSRTRCACLLTAFCHGFVFIAASYYLPLYFQTVLGATPLLSGVYTFPFALSLSI-CSACAGIIIKKT 408
                 5666689999999999*******************************9999999888876655.456778888875 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.0074
                 xxxxxxxxxxxxxxxxxxx..xxxxx.xxxxxxxxxxxxxxxxxx.......x...xxxxxxxxxxxxxxx RF
        OATP 216 Wlgflilgvllllaaiplf..fFPke.lpkkkeerakkkseeesa.......e...kkeekkkkeksksse 273
                 W+ +  +g+l +++++++   ++ +e +     ++++  ++ee+a       +   k+++++kk++++ss+
  KKY21718.1 556 WIFYTAMGALGIFFSFFIGkkVLSREvQ-----THKQGLEAEEEArqerlteKkakKEAKEDKKRRHTSSQ 621
                 7778888888888886665223444442.....22222222222222222321222111122222211111 PP

>> DUF1764  Eukaryotic protein of unknown function (DUF1764)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.5   0.00065       1.3      26      81 ..     583     639 ..     571     643 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00065
     DUF1764  26 ekeeeeeekekkkkskkkkkkkkkkeeekkfedseskkrrktedGlpvYte.eeLgi 81 
                 ++++++ e+e++ ++++  +kk kke +++ +++++++++  +dGlp Y+  +eL +
  KKY21718.1 583 QTHKQGLEAEEEARQERLTEKKAKKEAKEDKKRRHTSSQQMEKDGLPQYSRiDELAV 639
                 222222233333333333333333344444444444789999*******96588866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1471  (0.0820458); expected 358.6 (0.02)
Passed bias filter:                      885  (0.0493614); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.28u 0.30s 00:00:01.58 Elapsed: 00:00:00.50
# Mc/sec: 9461.68
//
Query:       KKY21719.1  [L=478]
Description: hypothetical protein UCRPC4_g03486 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3097.86
//
Query:       KKY21720.1  [L=329]
Description: putative isoflavone reductase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-13   50.6   0.0    2.2e-13   50.3   0.0    1.1  1  NmrA            NmrA-like family
     0.0022   17.9   0.0     0.0033   17.3   0.0    1.3  1  NAD_binding_10  NAD(P)H-binding


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   2.5e-17   2.2e-13      24     230 ..      35     261 ..       7     263 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 2.5e-17
                 EEEEEES-S..........-SHHHHHHHHSTTEEEES-TT..-HHHHHHHHTT-SEEEE---GG..S-HHHHHHHHHHHHHHHS-SEEEEEE---GG.G CS
        NmrA  24 kvralvRdt..........kselakslkeaGvelvkgdld..dkeslvealkgvdvvfsvtgfy..skeiedgkklvdAakeaGvkhfiySslgddndr 108
                 +v +lvR +          k+++++ l++ Gv l++ dl   +k+ lv+a+ + d + s tgf   s+ i    k v A+ ea+v+ fi+ ++g d d+
  KKY21720.1  35 SVSVLVRPSpvldgktdssKTQKLNLLQSLGVSLLHIDLAacSKDELVQAFVDYDCIVSCTGFVggSDTI---WKTVYAVYEAKVPYFIPWQFGVDYDQ 130
                 68899998889999998889999999************98779*******************99655555...56799********************* PP

                 T.SSS---TTTHHHHHHHHHHHHC.............TS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS..-EEEEESS-TTS-EE-HHHHHHHHHHHH CS
        NmrA 109 snaeepavphfdsKaeieeyvral.............gipytfvyagffmenflsllaqlkvgdtappe.dkvtllgpgnpkavlldaeeDiGafviki 193
                 +     a  +++    +++ +r+                + t+v +++f++++  ++ +  + d + +    v+ lg  + k    ++ +DiG++++ +
  KKY21720.1 131 VGYGS-AQRLWSIQLDVRRFLRSHsgetsatthamasNTQWTIVQTVIFTSFLFEPWFE--IVDVRDSSkPIVRALGGWENKVST-TSPKDIGKVTAMV 225
                 *5555.***************************99999999***********9999988..444443330234444444434444.69*********** PP

                 HHHHHHHTTEEEEE-SEEE-HHHHHHHHHHHHTS-EE CS
        NmrA 194 lkdprklkgkriklagntlsgneivelfekkigktvk 230
                 + dp+ + ++++k ag+t+++ e++++  +++g +vk
  KKY21720.1 226 VFDPS-VRNQVVKCAGDTVTYAELADIVGEALGIPVK 261
                 ***97.67899********************999886 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.7e-07    0.0033      37     147 ..      62     179 ..      50     229 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.7e-07
                     CTTTCEEEE--TT..-CCHHHHHHTT-SEEEES---TCCHHHHHHHHHHHHHHCT--EEEEEEETTTTSGCG.CHHHHHHH.H.CCHHHHHH... CS
  NAD_binding_10  37 aeeglevvegdvt..dvedlaealkgadaVvsalggggkdeegaknivdaakeagvkRfvlvsaigvgdevp.gefgewnk.e.llkaylaa... 123
                     ++ g++++++d+   ++++l +a+ ++d +vs++g  g+ +++  ++v a+ ea+v  f+  +    +d+v  g+ +++++ +  +++ l+    
      KKY21720.1  62 QSLGVSLLHIDLAacSKDELVQAFVDYDCIVSCTGFVGG-SDTIWKTVYAVYEAKVPYFIPWQFGVDYDQVGyGSAQRLWSiQlDVRRFLRShsg 155
                     56778888877764489*****************98887.4677788889999*******98764334433214444333212245666655111 PP

                     HHHHHHHHHHSSSEEEEEEE-CEE CS
  NAD_binding_10 124 kraaeellrasgldwTivrpggLt 147
                      + a  +  as+ +wTiv+   +t
      KKY21720.1 156 ETSATTHAMASNTQWTIVQTVIFT 179
                     6678889999*********98887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.53
# Mc/sec: 1877.16
//
Query:       KKY21721.1  [L=933]
Description: putative capsular associated protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-18   65.5   0.1    1.6e-11   43.8   0.1    3.3  2  Glyco_transf_90  Glycosyl transferase family 90
  ------ inclusion threshold ------
      0.061   13.2   0.1       0.15   11.9   0.1    1.6  1  HPIH             N-terminal domain with HPIH motif


Domain annotation for each model (and alignments):
>> Glyco_transf_90  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.5e-07    0.0041       8      95 ..     413     502 ..     405     512 .. 0.81
   2 !   43.8   0.1   1.8e-15   1.6e-11     104     323 ..     630     917 ..     622     922 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.5e-07
  Glyco_transf_90   8 dyfrvieeDLkpwret...gi...treaverakrkalfrlviingrvyvekykksvqtrdvftiwgilqLlrkypgklpDlelmfncdDrPvvk 95 
                      d + +++eDL pwr++    i   t e+v +   +  + ++i ng +   k  ++++t  ++++ gi +++  ++  lpD+++ fn++D   v 
       KKY21721.1 413 DQYDQMHEDLLPWRSIspsEIrrlTTEIVSNP-WNEICGISIRNGNATATK--NAIPTH-AWMLEGIIKMIEPFQEFLPDMDIAFNMNDEARVA 502
                      6799**********974333433355555555.5778999*****997776..99***9.9****************************98775 PP

  == domain 2  score: 43.8 bits;  conditional E-value: 1.8e-15
  Glyco_transf_90 104 aappPlfsycgdeetlDivfP.dwsfw.gwpevnikrwslllk.elkegnkkvkweerepyaywkGnpsvae....tReeLlkcnrskkelvda 190
                      ++ +P+fs ++ + ++Di++P +w++   +    + ++ +l + +   gn   +++e++++ +w+G+ s        R     + r++   +  
       KKY21721.1 630 NTLQPVFSQSKPHGYNDILYPsAWNYMdKVRYFPLDPMGNLGEpDYFPGNPDIPFSEKKNVLFWRGSTSEGVaegiGRATWRGMVRQRIVYLA- 722
                      4689*****************669999888888888887765437889******************987554113223332222222222222. PP

  Glyco_transf_90 191 rltkq.......................................................dekkeskegvkessledqckhkYkiyieGvaasv 229
                          +                                                       d + e+   v+ ++++d+ +++Y + ++G   s 
       KKY21721.1 723 ----NnltdasydnvvlllpkhntgkyeyelvsgndveklgllmdihivdriarcggvdcDDQAEEFGLVQPTDFQDHWQYRYLFDLDGAGFSG 812
                      ....1233336666699999**************************************987777888899************************ PP

  Glyco_transf_90 230 sekyilacdslvllvkpeyydffsreLkplehYvPiks..kdk..........lrdlkeavdwgnahdekaqeiaeegseFireeLkmddvydY 311
                      ++   l  +sl +++ + + +++ + L++++h+vP +   +d              l+ +  w+  h  +a+ iaeeg++++++ L+ +d+  Y
       KKY21721.1 813 RFLPFLQSKSLPFKT-ALFREWYDERLTAWRHFVPQDLrlHDVystlayfagfNGTLHGKPAWMTPHLGEAEMIAEEGRRWAEKVLRKEDMEVY 905
                      **999******9986.68*****************665103331111111111122344557999***************************** PP

  Glyco_transf_90 312 mfhLlteYakll 323
                      +f+Ll e+++l 
       KKY21721.1 906 FFRLLLEWGRLT 917
                      *******99885 PP

>> HPIH  N-terminal domain with HPIH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   1.7e-05      0.15       9      43 ..      25      59 ..      18      74 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.7e-05
        HPIH  9 lskfaakhPIhtIvvvallasttYlsvleeslfdw 43
                 s+fa  +PIht+v  + la ++ ls+ +++ + +
  KKY21721.1 25 PSSFAYDRPIHTLVYGLALAGFSLLSLAQSYPNLF 59
                5899*************************996655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (933 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.35s 00:00:01.19 Elapsed: 00:00:00.55
# Mc/sec: 5146.34
//
Query:       KKY21722.1  [L=1119]
Description: putative nucleolar atpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-96  321.1   0.1    8.9e-96  319.7   0.0    1.8  2  GNAT_acetyltr_2  GNAT acetyltransferase 2
      1e-76  257.7   9.6    5.4e-76  255.4   9.6    2.1  1  tRNA_bind_2      Possible tRNA binding domain
    2.6e-65  219.6   0.0    1.7e-64  217.0   0.0    2.4  2  Helicase_RecD    Helicase
    2.7e-34  117.0   0.0    6.7e-34  115.7   0.0    1.8  1  DUF1726          Domain of unknown function (DUF1726)
    2.2e-05   24.3   0.0       0.02   14.6   0.0    2.8  2  AAA_30           AAA domain
     0.0067   16.8   0.0      0.031   14.6   0.0    2.2  2  AAA_19           AAA domain
  ------ inclusion threshold ------
      0.065   13.5   0.2       0.17   12.1   0.2    1.7  1  GHMP_kinases_N   GHMP kinases N terminal domain


Domain annotation for each model (and alignments):
>> GNAT_acetyltr_2  GNAT acetyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  319.7   0.0   3.5e-99   8.9e-96       1     226 [.     541     770 ..     541     771 .. 0.96
   2 ?   -3.8   1.3       2.7     7e+03     120     150 ..    1064    1094 ..    1045    1115 .. 0.47

  Alignments for each domain:
  == domain 1  score: 319.7 bits;  conditional E-value: 3.5e-99
  GNAT_acetyltr_2   1 klvallvssHYknsPnDLqllsDaPahklfvLlapkkek.kklpevlcvvqvalEGkiskesvknslsrgkrasGdlipwtlsqqfqdeefasl 93 
                      +++al+v+sHYknsPnDLql+sDaPah+lfvL+ p +e+ ++lpe+lcv+qvalEG+is++s+ + lsrg+ra Gdlipw++sqqfqd+efa l
       KKY21722.1 541 QMMALYVASHYKNSPNDLQLMSDAPAHQLFVLVPPIDEEaTRLPEPLCVIQVALEGRISRQSILSGLSRGQRAGGDLIPWLISQQFQDSEFAGL 634
                      69*********************************999999***************************************************** PP

  GNAT_acetyltr_2  94 sGaRivRiAvhpelqkmGYGsralellekyyegklssleeeeekeeeeeeekeeeee...klsleeeklkprkelpplllklseekpekldylg 184
                      sG R+vRiA++p++ +mGYGsralell+++yegk+ sl+e ee  +ee  ++ +e+    +l  ++ ++++ +++ppl++klse++p+ ldylg
       KKY21722.1 635 SGSRVVRIATNPDYLNMGYGSRALELLTDFYEGKFMSLSEGEEPGNEEIVRVMDEDLensNLLDDTVHVRDIRTMPPLFSKLSERRPDILDYLG 728
                      ******************************************9999998888777665545566777889999********************* PP

  GNAT_acetyltr_2 185 vsfGltseLlkFWkragfspvylrqtaneltGEhsaimlrsl 226
                      vs+Glts L+kFWkr+gfspvylrqtan+ltGEh+++mlr+l
       KKY21722.1 729 VSYGLTSPLHKFWKRSGFSPVYLRQTANDLTGEHTCVMLRPL 770
                      ****************************************97 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.7
  GNAT_acetyltr_2  120 lekyyegklssleeeeekeeeeeeekeeeee 150 
                       +++  + k ++ e++ee++ ++ ++k+++++
       KKY21722.1 1064 IKAPSKRKAAEDENTEENTGDQGKTKTAKKD 1094
                       4444444444444444333333333222222 PP

>> tRNA_bind_2  Possible tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.4   9.6   2.1e-79   5.4e-76       1     233 [.     778    1034 ..     778    1036 .. 0.91

  Alignments for each domain:
  == domain 1  score: 255.4 bits;  conditional E-value: 2.1e-79
                   HHHHHHHHHHHHHHHHHHHHSS------S--------------------------------HHHHHHHHHHHHS---HHHHHSSSSHHHHHHHH-- CS
  tRNA_bind_2    1 WLgafakdFrkRflsLLsyqFrkfeavlaLsilesknkgeklekseekkeltkeeldellspfDlkRLesYannllDYhvilDllptlaklyFsgr 96  
                   WL+a++ dF+kRfl+LLsyqFr f++v++Lsi es ++     +s+++ +ltk++ld+ +spfDlkRLesYann+lDYhvilD++p++a  yF+gr
   KKY21722.1  778 WLSAYSLDFHKRFLTLLSYQFRAFPSVQSLSISESVTQK----TSHSTLSLTKSDLDSSFSPFDLKRLESYANNMLDYHVILDMMPQIAFYYFTGR 869 
                   ***********************************9854....3567899********************************************** PP

                   SSTT.............TS-SSSSSSHHHHHHTT---HHHHHHHHT--SSHHHHHHHHHHHHHHHHH-HHHHHHHHH-XXXXXXXX.......... CS
  tRNA_bind_2   97 lkee.............vkLsavqsaiLlaiGLQrksvddlekeLnlpsnQvlalFvkiirkvskalreilekaieeelpkekeee.......... 169 
                   ++++             v+Ls+vq+aiLlaiGLQrk+++d+ekeL+++++Q+la+Fvki+rk+++++r+i e+a+ e+l ++++            
   KKY21722.1  870 MRSTalandaqtsgvtgVSLSGVQQAILLAIGLQRKQLEDVEKELGVSVSQLLAMFVKIVRKITSYFRAISERAVGETLASRSKPGhsasrlidde 965 
                   *853222333334444489*************************************************************99987789999**999 PP

                   .....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  tRNA_bind_2  170 .....kaaeaeeeeakekelkpleesleeeLeeaakeveeklkekqrelidsldlekYaikgdeeewek 233 
                        +a +a++ +a+ek+++pl++sl++eL+e+++ev+e+l+ekq++lid+l+l+kY ++g++++ e+
   KKY21722.1  966 qeaevHALDATSLSAQEKRFQPLKQSLQQELAEGGREVDEQLREKQKALIDALPLDKYGLNGSASDAED 1034
                   888877777888889999********************************************9998876 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       0.6   1.5e+03     118     161 ..     134     173 ..      67     190 .. 0.69
   2 !  217.0   0.0   6.5e-68   1.7e-64       2     177 .]     283     499 ..     282     499 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.6
  Helicase_RecD 118 vlatTvhGYEGtGrgfslkflkqlkkekkrelreleleepiRya 161
                    +la T++  EG G  + l +lk +k+ k  +l  l+++ + Ry+
     KKY21722.1 134 LLARTIETVEGGG--LVLLLLKGMKSLK--QLYTLSMDIHSRYR 173
                    4566777777777..6666666665432..56666666666665 PP

  == domain 2  score: 217.0 bits;  conditional E-value: 6.5e-68
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflakglealglke..........eekkkkaekaelrvr.....kqrieyiapd 82 
                    ltA+RGRGKSaalG+a+aa+ia+g+sni++t+ps+en+ktlfef++kg++alg+ +          +++++ka+      +     +q+i+yi+p+
     KKY21722.1 283 LTAGRGRGKSAALGVAVAAAIAHGYSNIFITSPSPENLKTLFEFVFKGFDALGYMDhvdytilqstNPDFNKAIVRV---NvhrqhRQTIQYIQPQ 375
                    8*******************************************************9******99877777777332...222467********** PP

  Helicase_RecD  83 ellklkeqadllvvDEAAaiplpllkkllekfkrvvlatTvhGYEGtGrgfslkflkqlkke...............................kkr 147
                    + + l  qa+llv+DEAAaiplpl++kl+ + + v++a+T++GYEGtGr++slk+++ql+++                                 r
     KKY21722.1 376 DSHVLG-QAELLVIDEAAAIPLPLVRKLI-GSYLVFMASTINGYEGTGRSLSLKLIQQLREQsrgstkaigddtdvadrltgkslrngdsgytGGR 469
                    ****98.8*********************.999***********************************************************9778 PP

  Helicase_RecD 148 elreleleepiRyaegdplEkwlndlLlLd 177
                    +lre++l+epiRya+gd +Ekwln+lL+Ld
     KKY21722.1 470 SLREITLSEPIRYAPGDGVEKWLNRLLCLD 499
                    9****************************7 PP

>> DUF1726  Domain of unknown function (DUF1726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7   0.0   2.6e-37   6.7e-34       1      93 []     108     202 ..     108     202 .. 0.99

  Alignments for each domain:
  == domain 1  score: 115.7 bits;  conditional E-value: 2.6e-37
     DUF1726   1 ykesekvLGqtydllvldlfealtPnalgrlvetVrGGGliilllppleelkqlyt...dfhkklvveplteevkkrfnkrfirklkehegilivd 93 
                 yke+ek+LG+ty++++l++fealtPn+l+r++etV+GGGl++lll+ +++lkqlyt   d+h+++++e+++ +v +rfn+rfi +l ++e++l+vd
  KKY21722.1 108 YKETEKILGNTYGMCILQDFEALTPNLLARTIETVEGGGLVLLLLKGMKSLKQLYTlsmDIHSRYRTEAHD-DVVARFNERFILSLGSCESCLVVD 202
                 9*********************************************************************6.**********************98 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   7.8e-06      0.02      19     109 ..     279     403 ..     258     407 .. 0.74
   2 !    6.6   0.0    0.0023       5.8      21      64 ..     412     455 ..     408     499 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.8e-06
      AAA_30  19 rvavltGpAGtGKttalkalreaweaag.grviglAptgkaAkvLae.......elgieastiakllkrlk..........................gr 83 
                  +++lt++ G GK+ al+++++a+ a+g  ++++ +p+ +  k+L e       +lg   +    +l++++                          + 
  KKY21722.1 279 STVALTAGRGRGKSAALGVAVAAAIAHGySNIFITSPSPENLKTLFEfvfkgfdALGYMDHVDYTILQSTNpdfnkaivrvnvhrqhrqtiqyiqpqDS 377
                 46899***************999999974789999******9999955555555444433333333433335555666666677777788899999865 PP

      AAA_30  84 arlepgtllivDEagmvdtkqlaall 109
                   l +++ll++DEa+ +    +++l+
  KKY21722.1 378 HVLGQAELLVIDEAAAIPLPLVRKLI 403
                 678899*********99888888776 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0023
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLae 64 
                 ++++G+ GtG + +lk ++++ e++ g+  ++     +A++L+ 
  KKY21722.1 412 STINGYEGTGRSLSLKLIQQLREQSRGSTKAIGDDTDVADRLTG 455
                 6799*********************9999999999999999874 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.5     9e+03     115     138 ..       7      32 ..       5      36 .. 0.71
   2 !   14.6   0.0   1.2e-05     0.031       4     123 ..     271     404 ..     269     410 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.5
      AAA_19 115 delqyrLlkallgekkk..lllvGDp 138
                 d+ + +L+++  +ekk+  +++vGD+
  KKY21722.1   7 DQRIPALIRNGIQEKKRsfIVVVGDR 32 
                 56666788877766655569999997 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.2e-05
      AAA_19   4 ave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae........atTiHrlal.........ldfddll 84 
                 a++ ++ ++++++taG G GK+  l  +va +++ g     +i + ++     k l e + +   +         +Ti + ++         ++++++ 
  KKY21722.1 271 AISeKTLRSTVALTAGRGRGKSAALGVAVAAAIAHGY---SNIFITSPSPENLKTLFEFVFKGF-DalgymdhvDYTILQSTNpdfnkaivrVNVHRQH 365
                 5644777899************************994...689999999999999999662222.1244444445555555557777787777777777 PP

      AAA_19  85 tealelleeaeeekklqeeellivDEfqdvd.elqyrLlk 123
                  ++ ++++  ++++ l ++ell++DE+  +  +l  +L+ 
  KKY21722.1 366 RQTIQYIQP-QDSHVLGQAELLVIDEAAAIPlPLVRKLIG 404
                 778888774.5666775666********999999999886 PP

>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   6.7e-05      0.17       9      33 ..     284     308 ..     276     330 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.7e-05
                     HTTSSSCHHHHHHHHHHHHHHHHTT CS
  GHMP_kinases_N   9 PvgaGLGSSAAlavalvaAllallg 33 
                       g+G G SAAl va++aA+++ ++
      KKY21722.1 284 TAGRGRGKSAALGVAVAAAIAHGYS 308
                     5699*****************9774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       929  (0.0518155); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.50
# Mc/sec: 6756.36
//
Query:       KKY21723.1  [L=212]
Description: hypothetical protein UCRPC4_g03490 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1414.77
//
Query:       KKY21724.1  [L=407]
Description: putative replication factor c subunit 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-16   58.3   0.0    2.1e-15   56.9   0.0    1.9  1  Rep_fac_C        Replication factor C C-terminal domain
    1.9e-14   54.2   0.0    4.8e-14   52.9   0.0    1.7  1  AAA              ATPase family associated with various cellul
    5.9e-13   48.9   0.0    7.6e-10   38.8   0.0    2.5  2  DNA_pol3_delta2  DNA polymerase III, delta subunit
    6.9e-06   25.9   0.0    1.5e-05   24.8   0.0    1.5  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    1.7e-05   24.8   0.0    3.8e-05   23.7   0.0    1.5  1  Rad17            Rad17 P-loop domain
    3.5e-05   24.1   0.5    8.4e-05   22.8   0.5    1.6  1  AAA_assoc_2      AAA C-terminal domain
    3.9e-05   23.9   0.1       0.04   14.2   0.1    2.7  1  AAA_22           AAA domain
    0.00016   21.5   0.0    0.00031   20.6   0.0    1.7  1  AAA_11           AAA domain
    0.00016   21.5   0.0    0.00034   20.5   0.0    1.5  1  DNA_pol3_delta   DNA polymerase III, delta subunit
    0.00031   20.2   0.0     0.0043   16.5   0.0    2.2  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    0.00084   19.1   0.0     0.0019   18.0   0.0    1.5  1  AAA_24           AAA domain
    0.00093   19.6   0.2     0.0071   16.7   0.2    2.6  1  AAA_16           AAA ATPase domain
     0.0014   18.6   0.0     0.0046   17.0   0.0    1.8  1  AAA_14           AAA domain
  ------ inclusion threshold ------
      0.011   15.9   0.2       0.11   12.7   0.0    2.6  1  AAA_33           AAA domain
       0.02   14.9   0.2        0.5   10.4   0.1    2.8  2  AAA_5            AAA domain (dynein-related subfamily)
      0.024   15.2   0.0      0.074   13.6   0.0    2.0  1  AAA_18           AAA domain
      0.048   13.9   0.0       0.11   12.8   0.0    1.6  1  AAA_28           AAA domain
      0.062   13.6   0.2       0.15   12.3   0.2    1.7  1  PyrI             Aspartate carbamoyltransferase regulatory ch
      0.087   12.5   0.0       0.28   10.9   0.0    1.9  2  AAA_30           AAA domain
       0.09   13.2   0.0       0.29   11.5   0.0    2.1  1  RNA_helicase     RNA helicase
       0.11   12.8   0.1       0.43   10.9   0.1    2.1  1  AAA_19           AAA domain
       0.12   11.8   0.0       0.26   10.8   0.0    1.5  1  AAA_7            P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> Rep_fac_C  Replication factor C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   2.6e-18   2.1e-15       6      84 ..     305     395 ..     300     399 .. 0.80

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 2.6e-18
                 HHHHHHHHHH............T-HHHHHHHHHHHHHHC---HHHHHHHHHHHGCCS...S-HHHHHHHHHHHHHHHHHHHCTH-HHHHHHH CS
   Rep_fac_C   6 ieeileacln............gdfeeaykklrellvekGysaediltqlhrvvkeq.eelpeaqkleilellgeiekrlveGasehlqlsa 84 
                 i+++++ + +              ++e+ ++++ +l+++Gysa+++++ql++ v ++ e++ +  k++i+ +l+ei+krl++Ga+e+l l++
  KKY21724.1 305 IRRLISVINPssslsssksksrYAYTEIASVIT-DLIAEGYSANQVINQLFKAVLYEdETIGNVKKNQIVGVLSEIDKRLIDGADEELTLLD 395
                 555555553354444444444456788888896.**********************988899999************************987 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   5.9e-17   4.8e-14       1     129 [.      69     194 ..      69     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 5.9e-17
                 EEEESSTTSSHHHHHHHHHHHH.....THEEEEEETTTCSSSSTTHHHHHHHHHHHH.HHHTS........TS.EEEEEETGGGHHHHHTTCCCHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel.....gvefleisgsellskyvgesekkirelfke.akeka........kp.silfiDEidalaksrsgseseeeer 84 
                 +l yGppG+GKT+++ a+a++l     ++++le++ s+ +   ++   ++i+++ ++ +++           p +i+++DE+d+++ +           
  KKY21724.1  69 MLYYGPPGVGKTTTILALARQLfgplfSSRVLELNSSDER--GISVVRERIKGFASQqISK-PpkdfpypcPPfKIVILDEADNMVADA---------- 154
                 799******************8665567999999999999..9999999999999883333.257999998778************999.......... PP

                 HHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSEEEE CS
         AAA  85 vvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdrkie 129
                  +n+L + ++ ++k   ++ +++ +n p+++ +++  +R+++  +
  KKY21724.1 155 -QNALRRTMEIYSK---TTRFVLCCNFPSRIIDPIA-SRCSKFRF 194
                 .*************...589****************.99987655 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0037         3       1      44 [.      49      91 ..      49      99 .. 0.93
   2 !   38.8   0.0   9.4e-13   7.6e-10     104     162 ..     139     197 ..     102     198 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0037
  DNA_pol3_delta2  1 gqeealkilskalksgrlahayLfeGdegigkkelalnlakall 44
                     gq+++++il++ l   +l h +L +G+ g+gk ++ l+la++l+
       KKY21724.1 49 GQNHTVEILRRTLGAANLPH-MLYYGPPGVGKTTTILALARQLF 91
                     689999************99.69******************997 PP

  == domain 2  score: 38.8 bits;  conditional E-value: 9.4e-13
  DNA_pol3_delta2 104 kkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelkfspl 162
                       ki+i+++a++m + A+Nal +t+E  s+ + f+L+ + +++++++i SRc +++f++l
       KKY21724.1 139 FKIVILDEADNMVADAQNALRRTMEIYSKTTRFVLCCNFPSRIIDPIASRCSKFRFRQL 197
                      69******************************************************987 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.8e-08   1.5e-05       2      57 ..      40      90 ..      39     102 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.8e-08
      RuvB_N  2 rPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakel 57
                rP++l++ +gq++  e l+ ++ aa+     l h+l yGpPG+Gktt    +a++l
  KKY21724.1 40 RPRTLDDITGQNHTVEILRRTLGAAN-----LPHMLYYGPPGVGKTTTILALARQL 90
                9******************9999985.....89**************988888876 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   4.6e-08   3.8e-05       3      69 ..      29      90 ..      27     108 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 4.6e-08
       Rad17  3 edenelWfekykPekaeelavhkkkieevkewlkadvLesrkkriLLisGPsGCgkstvvkvLskel 69
                e +++ W+e+++P +++++    + +e +++ l a  L++      L  GP+G gk+t++  L+++l
  KKY21724.1 29 EKRQDTWVERHRPRTLDDITGQNHTVEILRRTLGAANLPHM-----LYYGPPGVGKTTTILALARQL 90
                67899**********************************98.....99***************9976 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.5     1e-07   8.4e-05       3      66 ..     213     273 ..     211     283 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1e-07
                  X.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXX CS
  AAA_assoc_2   3 kklkleddalealaeladGDaRkaLnlLElaaeaaeak......egkieitledleealqrkalryDkag 66 
                  +++++ed ++e l+++++GD R+a+++L+ aa+  +a+      +         +++   rk +  D ++
   KKY21724.1 213 ENVQYEDGVIEKLLQTSEGDLRRAITYLQSAATLVNASsltlsnD---------AQSKKRRKIVDQDSDE 273
                  6899*************************9999998633333331.........3333344444444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   4.9e-05      0.04       8      61 ..      69     118 ..      66     176 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.9e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrell 61 
                 ++ +G++G+GKTt++  l++ql    +    +++v++ + + + + + +++++ 
  KKY21724.1  69 MLYYGPPGVGKTTTILALARQL----FGPLFSSRVLELNSSDERGISVVRERIK 118
                 5668***************998....2222455555555554444444444444 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   3.8e-07   0.00031      18     104 ..      68     221 ..      49     352 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3.8e-07
      AAA_11  18 eitliqGPPGtgKTktivellsqll.........................................................sr.........rkseee 50 
                 +  l  GPPG gKT+ti++l +ql                                                          ++         r+ e  
  KKY21724.1  68 H-MLYYGPPGVGKTTTILALARQLFgplfssrvlelnssdergisvvrerikgfasqqiskppkdfpypcppfkivildeadNMvadaqnalrRTMEIY 165
                 3.6889*******************999*9999999999999999999999888888887777777777766666666665511555555664446778 PP

      AAA_11  51 ksakpriLvCapSNaAvDellerllr.glldsegekykpkivRvgnee.....eriseav 104
                  ++++ +L C      +D +++r ++ ++ + +ge+ + ++  +  +e     +     v
  KKY21724.1 166 SKTTRFVLCCNFPSRIIDPIASRCSKfRFRQLDGEDAGQRLKNIAEAEnvqyeD----GV 221
                 888899999999999999999999999999999999998888888888533332....22 PP

>> DNA_pol3_delta  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   4.1e-07   0.00034      59     169 ..     140     240 ..     138     253 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4.1e-07
                     EEEEEE--.....TT-S-TTHHHHHHHHTTT--SSEEEEEEES.S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHHH CS
  DNA_pol3_delta  59 rivvlknpklltkesklnekllkeLeeylsnlpedtlLiliapkklderkklvklLkkkatvveaktlkeeelkkwiqkraqelglkiekealel 153
                     +iv+l+ +      ++  ++ +++L ++++ ++++t ++l+++       ++++ ++++ + +++ +l++e+  + ++++a++++++ e+ ++e 
      KKY21724.1 140 KIVILDEA------DNMVADAQNALRRTMEIYSKTTRFVLCCN-FP---SRIIDPIASRCSKFRFRQLDGEDAGQRLKNIAEAENVQYEDGVIEK 224
                     78888888......669999***********************.33...3599999999999********************************* PP

                     HHHHHTT-HHHHHHHH CS
  DNA_pol3_delta 154 Llelvennlsaikqel 169
                     Ll+ +e++l+++ + l
      KKY21724.1 225 LLQTSEGDLRRAITYL 240
                     *********9987766 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   5.2e-06    0.0043       2      59 ..      44     104 ..      43     129 .. 0.81
   2 ?    1.2   0.0      0.25     2e+02     109     134 ..     141     166 ..     140     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.2e-06
  Mg_chelatase   2 lkdvkGqeeakrale..iaaaGgHnlllvGppGsGKtmlakrl.psllpplseeealevak 59 
                   l d++Gq+++ + l+  + aa   ++l +GppG GKt  + +l  +l+ pl ++ +le ++
    KKY21724.1  44 LDDITGQNHTVEILRrtLGAANLPHMLYYGPPGVGKTTTILALaRQLFGPLFSSRVLELNS 104
                   789*******9999544889999*************9877666256888888888888765 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.25
  Mg_chelatase 109 vLfLDElpefkrkvlevLRePledge 134
                   +++LDE+ ++ +++ ++LR+ +e  +
    KKY21724.1 141 IVILDEADNMVADAQNALRRTMEIYS 166
                   678*****************999654 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.3e-06    0.0019       5      91 ..      69     164 ..      66     171 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.3e-06
      AAA_24   5 iliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel............aaeladyktlviDtideleelclaevirqnek 91 
                 +l yGp+g+GKTt+++ l  + lf  ++  ++ l+ +   d +++  +++ ++ +            +   +++k++++D +d ++  + + ++r  e+
  KKY21724.1  69 MLYYGPPGVGKTTTILAL-ARQLFGPLFS-SRVLELNS-SDERGISVVRERIKGFasqqiskppkdfPYPCPPFKIVILDEADNMVADAQNALRRTMEI 164
                 788***************.9999999988.32333333.34456666666666666667777888888888899*******999999999888877666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   8.7e-06    0.0071       8      54 ..      53      94 ..      47     340 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 8.7e-06
      AAA_16  8 eleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggi 54
                 +e L+++l++++    + +l +G++GvGK++ + +l+r+l +   +
  KKY21724.1 53 TVEILRRTLGAAN---LPHMLYYGPPGVGKTTTILALARQLFGP--L 94
                5566666666554...378999****************999876..3 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   5.6e-06    0.0046       8      95 ..      72     171 ..      67     176 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 5.6e-06
      AAA_14   8 tGaRrvGKTtllkqlikell..vkkesilyinldderdkkladpekllelileklke.........ekktylflDEiqe.vpewekalkslvdeg.knl 93 
                  G+  vGKTt +  l+++l+    ++++l++n  der  +   + ++  +  +++++         +  ++++lDE+ + v ++++al++ ++ + k  
  KKY21724.1  72 YGPPGVGKTTTILALARQLFgpLFSSRVLELNSSDERGISVVRE-RIKGFASQQISKppkdfpypcPPFKIVILDEADNmVADAQNALRRTMEIYsKTT 169
                 69999**************99988999*****999999765544.34444444455567888899977789******862689******9999663444 PP

      AAA_14  94 dv 95 
                 ++
  KKY21724.1 170 RF 171
                 55 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00013      0.11       5      33 ..      72     146 ..      69     338 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00013
      AAA_33   5 vGlpGsGKstlaerllkklgavllssdt..............................................l 33 
                  G+pG+GK+t +  l+++l + l ss +                                              +
  KKY21724.1  72 YGPPGVGKTTTILALARQLFGPLFSSRVlelnssdergisvvrerikgfasqqiskppkdfpypcppfkivildE 146
                 6****************9995555555544445556888884433333333333333333333333333333330 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00061       0.5       2      85 ..      69     158 ..      68     166 .. 0.55
   2 ?    0.9   0.0      0.51   4.2e+02      66      95 ..     288     318 ..     230     358 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00061
                 EEEE--SSSSHHHHHHHGGGGB.....S--EEEEE--TT--HHHHH--B--...........--------G-SEEEEESGGG--HHHHHHH CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.....nreveyvqltrdtteedlkgrreik..ngttslvdsplvraaregeilvlDEveraesevlnsL 85 
                 +l  GppG+gK++ +  la+ l      ++v++ ++++d +   ++ +r     +++ s  ++ +   +   +i++lDE +++  +++n+L
  KKY21724.1  69 MLYYGPPGVGKTTTILALARQLfgplfSSRVLE-LNSSDERGISVVRERIKGfaSQQISKPPKDFPYPCPPFKIVILDEADNMVADAQNAL 158
                 6678**************999966642222222.222222222222222212344455555555555555666666666666666666665 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.51
                 -SEEEEESGGG--.HHHHHHHHHHHHSSEEE CS
       AAA_5  66 geilvlDEverae.sevlnsLlslleerrll 95 
                   + +++E+  +  ++++ +L+s+++    l
  KKY21724.1 288 VTVSIIEEIAGVVpDSWIRRLISVINPSSSL 318
                 4567899998877699999999999876655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   9.1e-05     0.074       5      25 ..      73     101 ..      70     180 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.1e-05
      AAA_18   5 GtpGvGKttlakeLskrlgf.........g 25 
                 G+pGvGKtt   +L++ l f          
  KKY21724.1  73 GPPGVGKTTTILALARQL-FgplfssrvlE 101
                 9*************9997.43344444331 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00013      0.11       5      63 ..      72     147 ..      69     163 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
      AAA_28   5 tGgestGKTtlleaLa...................argypvvpEaareileeklakgedalpwvedllafaervleeq 63 
                  G+++ GKTt++ aLa                   +rg++vv+E    + +++  k  ++ p+      f++ +l+e+
  KKY21724.1  72 YGPPGVGKTTTILALArqlfgplfssrvlelnssdERGISVVRERIKGFASQQISKPPKDFPY--PCPPFKIVILDEA 147
                 69**************76667776666666655544588888888888888877776666665..3555666555555 PP

>> PyrI  Aspartate carbamoyltransferase regulatory chain, allosteric domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   0.00019      0.15      36      85 ..     250     296 ..     229     300 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00019
                 S-EEEEEEEEETTTEEEEEEEEET----HHHHHHHCCC-TT-EEEEEETT CS
        PyrI  36 ekvaiiknvkskklgkKdiikiegkelseeeldklaliapnatiniIkdg 85 
                 +++++ + ++skk  ++ i+  ++   + +++d ++l +p++t++iI++ 
  KKY21724.1 250 SSLTLSNDAQSKK--RRKIVDQDSD-EDMTDVDSITLTNPQVTVSIIEEI 296
                 3567777777777..7889998884.569******************986 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00034      0.28      21     109 ..      69     159 ..      54     174 .. 0.66
   2 ?   -2.6   0.0       4.6   3.8e+03      59      97 ..     249     296 ..     220     313 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00034
      AAA_30  21 avltGpAGtGKttalkal.reaweaa.ggrvigl.AptgkaAkvLaeelg.ieastiakllkrlk.grarlepgtllivDEagmvdtkqlaall 109
                 ++  Gp+G GKtt++ al r+++      rv+ l ++ ++   v++e +  ++++ i k  k        + p +++i DEa  + ++  +al 
  KKY21724.1  69 MLYYGPPGVGKTTTILALaRQLFGPLfSSRVLELnSSDERGISVVRERIKgFASQQISKPPKDFPyP---CPPFKIVILDEADNMVADAQNALR 159
                 5678********9988875777777776777755144455556677766436777777777555542...445588888888766544444444 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.6
      AAA_30  59 AkvLaeelgieastiakllkrlk........grarlepg.tllivDEa 97 
                 A  L+ + +++++   k++++          + +  +p+ t+ i+ E+
  KKY21724.1 249 ASSLTLSNDAQSKKRRKIVDQDSdedmtdvdSITLTNPQvTVSIIEEI 296
                 333333333344444444433335555555433334455566666664 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00035      0.29       3      26 ..      71      94 ..      69     175 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00035
  RNA_helicase  3 lyGpsgeGKStlakeLakallkkl 26
                   yGp+g+GK+t++  La++l + l
    KKY21724.1 71 YYGPPGVGKTTTILALARQLFGPL 94
                  69****************998665 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00053      0.43       8      34 ..      64      90 ..      58     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00053
      AAA_19  8 lkekvllvtaGpGtGKTrvlkhivall 34
                ++ +++l  ++pG GKT+++ +  + l
  KKY21724.1 64 ANLPHMLYYGPPGVGKTTTILALARQL 90
                556789999***********9887766 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00031      0.26      34      70 ..      67     103 ..      48     108 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00031
       AAA_7  34 kpvllvGptGtGKtviikdllkkldkekylsltinfs 70 
                  ++l++Gp G+GKt++i  l ++l    ++s +++++
  KKY21724.1  67 PHMLYYGPPGVGKTTTILALARQLFGPLFSSRVLELN 103
                 478999***********99999887666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.50
# Mc/sec: 2465.90
//
Query:       KKY21725.1  [L=576]
Description: hypothetical protein UCRPC4_g03492 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       874  (0.0487478); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.53
# Mc/sec: 3244.25
//
Query:       KKY21726.1  [L=311]
Description: putative ydj1 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-20   73.1   9.2    2.7e-19   69.0   1.0    4.0  2  DnaJ       DnaJ domain
  ------ inclusion threshold ------
       0.14   12.3   2.4       0.41   10.8   2.4    1.8  1  BRX_assoc  Unstructured region between BRX_N and BRX domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   1.0     3e-23   2.7e-19       2      63 .]       4      79 ..       3      79 .. 0.86
   2 ?    2.1   1.7     0.025   2.2e+02      34      55 ..     247     268 ..     243     285 .. 0.77

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 3e-23
                HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHH..............HHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaee..............kFkeineAyevLsdpekRkqYD 63
                +Y+iLgv+ +a+++eIkk+Y++l+lkyHPDk   d++a+                 +++n+AyevLsdp kR+qYD
  KKY21726.1  4 FYKILGVPATANQSEIKKSYHRLSLKYHPDKAGPDSTAKFqevrighgirstfiDLEQLNAAYEVLSDPAKRQQYD 79
                8*******************************44442222347788899997777789*****************9 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.025
                 CCHHHHHHHHHHHHHHHHHHTS CS
        DnaJ  34 pkdpeaeekFkeineAyevLsd 55 
                 +kd eaee+F+   eA++  +d
  KKY21726.1 247 AKDVEAEERFEAAREAWKAEQD 268
                 46779***********987555 PP

>> BRX_assoc  Unstructured region between BRX_N and BRX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.4   4.5e-05      0.41      43      70 .]     141     168 ..     139     168 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.5e-05
   BRX_assoc  43 SttsnrsashneqanlEattRngsRtke 70 
                 S+tsn+s++h++q+++E   R + R++e
  KKY21726.1 141 SSTSNKSSGHKRQTQAEDEYREQRRAQE 168
                 89***************99999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3268  (0.182275); expected 358.6 (0.02)
Passed bias filter:                      663  (0.0369792); expected 358.6 (0.02)
Passed Vit filter:                       252  (0.0140554); expected 17.9 (0.001)
Passed Fwd filter:                        72  (0.00401584); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.34u 0.41s 00:00:01.75 Elapsed: 00:00:00.55
# Mc/sec: 1692.86
//
Query:       KKY21727.1  [L=298]
Description: putative atp synthase gamma mitochondrial [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-79  267.7   2.2    1.8e-79  267.4   2.2    1.0  1  ATP-synt    ATP synthase
  ------ inclusion threshold ------
      0.058   14.0   0.1       0.35   11.4   0.0    2.1  2  Rotamase_3  PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> ATP-synt  ATP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.4   2.2     2e-83   1.8e-79       1     278 [.      30     294 ..      30     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 267.4 bits;  conditional E-value: 2e-83
                 THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHCEHHHHTTT..SSG.S.SSEEEEEEE--SSSSSTTHHHHHHHHHHHH CS
    ATP-synt   1 slkeikrRiksvkstkkItkAmkmVaaaklrkaqealeaarpyaekleevlealakreeeekhpllkeeekkvllivitSDrGLcGgfNsnvikkaekl 99 
                 +l+ei+ R+ks+++++kItk+mk+Va++kl++a +a+ ++r y+++ ++v+e+  +      +p  +ee+kk+lliv++SD+GLcGg++s + +++++l
  KKY21727.1  30 TLREIEGRLKSIRNIEKITKTMKIVASTKLTRATRAMADSRVYGNTSNQVFENAET------KP--EEENKKTLLIVCSSDKGLCGGIHSGLSRYVRRL 120
                 69****************************************************22......33..345789************************655 PP

                 HHHHHTTTETEEEEESHHHHHHH..HHSS.EHHTTCE-TS.S--HHHHHHHHHHHHSHHHTTSBSEEEEEEEEECCTSEEEEEEEEESST...HCS..S CS
    ATP-synt 100 ieelkkegevklvvvGkkgreyf..krkvevqleftgvsk.kptfeeaseiaeeildlyeegeideveivynkfksaisqeptvekllplekeeekkek 195
                  ++   eg ++lv++G+k+++++  ++ +++ l+f gv+k  ptf++as+ia++++    ++e+ +v+i+ynkf++a s+ept+ + ++ e+   +k++
  KKY21727.1 121 FDS---EGPSDLVILGEKSKAQLsrSNAQNILLSFAGVGKdVPTFADASAIADQVC--LLDKEYTSVKILYNKFINATSYEPTIIEAFSEETI--TKSP 212
                 543...45469************84447788889***9999**************7..589****************************6444..3444 PP

                 STSEESS.HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
    ATP-synt 196 seyefepdeeevleellpeylasliyrallesaasEqaaRmtaMdnAtknakelidkltleyNraRQaaITqELieIvsGaeA 278
                 +  +fe d e+ +++l ++ la+++y al+e +a+E aaR++aMdnA+kna+++i+k+t++yNr+RQa+IT EL+eI++Ga+A
  KKY21727.1 213 NISQFEVD-ESAFANLREYALANSLYWALAEGHACEIAARQNAMDNASKNAGDMISKFTILYNRTRQAVITGELVEIITGATA 294
                 44477777.88**********************************************************************98 PP

>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.21   1.9e+03      12      44 ..     139     173 ..     129     179 .. 0.72
   2 ?   11.4   0.0   3.9e-05      0.35      36      72 ..     229     265 ..     200     282 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.21
  Rotamase_3  12 akdsvkvshIlistkg..kesrseeeakakadsll 44 
                 +    +++ Il+s +g  k+  + ++a a ad+++
  KKY21727.1 139 QLSRSNAQNILLSFAGvgKDVPTFADASAIADQVC 173
                 33378899999999998777777778888888776 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 3.9e-05
  Rotamase_3  36 akakadsllaalkegadFaalAkeySdDpaskenGGe 72 
                   a+a+sl+ al eg   + +A+++  D+ask+ G  
  KKY21727.1 229 EYALANSLYWALAEGHACEIAARQNAMDNASKNAGDM 265
                 5689**************************8877744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 1874.68
//
Query:       KKY21728.1  [L=1240]
Description: putative topoisomerase i [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-99  330.8   3.8      3e-99  330.8   3.8    3.7  4  Topoisom_I_N  Eukaryotic DNA topoisomerase I, DNA binding fra
    3.1e-96  321.1   5.7    3.1e-96  321.1   5.7    2.7  3  Topoisom_I    Eukaryotic DNA topoisomerase I, catalytic core
    1.4e-71  241.0   0.0    3.2e-71  239.8   0.0    1.6  1  Pkinase       Protein kinase domain
    3.6e-33  114.9   0.0      7e-33  114.0   0.0    1.4  1  Pkinase_Tyr   Protein tyrosine kinase
    1.2e-30  105.3   0.2    3.9e-30  103.6   0.2    2.0  1  Topo_C_assoc  C-terminal topoisomerase domain
  ------ inclusion threshold ------
      0.024   14.6   0.9      0.085   12.8   0.1    2.3  3  APH           Phosphotransferase enzyme family
       0.13   11.6   0.0       0.13   11.6   0.0    2.0  2  Kinase-like   Kinase-like


Domain annotation for each model (and alignments):
>> Topoisom_I_N  Eukaryotic DNA topoisomerase I, DNA binding fragment
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   3.5       1.7   4.5e+03     108     119 ..     161     172 ..     126     198 .. 0.52
   2 !  330.8   3.8  1.2e-102     3e-99       1     213 []     262     485 ..     262     485 .. 0.97
   3 ?   -3.4   0.8       2.2   5.5e+03      86     129 ..     500     540 ..     494     551 .. 0.44
   4 ?   -6.2   7.9         7   1.8e+04      63      99 ..     741     777 ..     707     820 .. 0.50

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.7
                   HHHHHHHHHHHH CS
  Topoisom_I_N 108 kkklkeekekle 119
                   k ++k+eke++e
    KKY21728.1 161 KIEKKAEKEAAE 172
                   222222221111 PP

  == domain 2  score: 330.8 bits;  conditional E-value: 1.2e-102
                   ---S-EE----B---------TT--EEETTEEE---HHHHHHHHHHHHTTTSS.GGG-HHHHHHHHHHHHHHHHHTT-..........---GGGEE- CS
  Topoisom_I_N   1 vkWktLehnGvlfppeYeplpknvklkydgkpvkLspeaEEvatfyaamletd.yakkevFqknffkdfkkvlkekek..........ikelekcdF 86 
                   +kW+tL+hnGv+fpp+Yeplpknvklkydg pv+L+peaEEva+f+++ml+++ +++++vFqknff+dfk+ lk++            ik+++kcdF
    KKY21728.1 262 IKWTTLQHNGVIFPPPYEPLPKNVKLKYDGVPVTLEPEAEEVAGFFGSMLNSThNVENPVFQKNFFDDFKDYLKKTGGakdskgnrvdIKDFKKCDF 358
                   69************************************************9774799****************8888777788888889******** PP

                   HHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHEEEETTEEEEEE--B----EE----TT-TTTT-EE----GGG-EEE--SSS-----STT- CS
  Topoisom_I_N  87 skikeylekekekkkaltkeekkklkeekekleekygyalldgrkekvgnfrvepPgLfrgrGehpktGklkkrvlpedvtiNigkdakvPeppagh 183
                   s+i+ey+ +++e+kkal+++ekk++k+ek+k+ee+y+y+++dgrk+kvgnfrvepPgLfrgrGehpktGk+k+rv+pe++tiNigk++kvP+pp+gh
    KKY21728.1 359 SPIYEYYFAQREAKKALSSAEKKAIKAEKDKVEEPYMYCMWDGRKQKVGNFRVEPPGLFRGRGEHPKTGKVKTRVQPEQITINIGKESKVPPPPEGH 455
                   ************************************************************************************************* PP

                   --SEEE--TT---SEEEE-TTT--EEEEEE CS
  Topoisom_I_N 184 kWkevvhdntvtwlaswkeningqvkyvmL 213
                   kWke++hd++ twla+w+ening++kyvmL
    KKY21728.1 456 KWKEIKHDQEGTWLAMWQENINGNYKYVML 485
                   *****************************8 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 2.2
                   -HHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHEEEETT CS
  Topoisom_I_N  86 Fskikeylekekekkkaltkeekkklkeekekleekygyalldg 129
                   F+k  e  ++  + +k   k  k ++ +e++++++ y   l+d+
    KKY21728.1 500 FEKARELKKHIDRIRKDYRKGLKAEVMAERQRATAMY---LIDQ 540
                   3333333333333444444444444444444444444...4454 PP

  == domain 4  score: -6.2 bits;  conditional E-value: 7
                   HHHHHHHHHH...HHTT----GGGEE-HHHHHHHHHHHHH CS
  Topoisom_I_N  63 nffkdfkkvl...kekekikelekcdFskikeylekekek 99 
                   +++++ ++ l   ++k+++k++e+ +    k   + ek+ 
    KKY21728.1 741 EWIQQHQEYLveeEKKKITKKFETQN---AKLKENGEKQL 777
                   44444555553211111122222222...11111111111 PP

>> Topoisom_I  Eukaryotic DNA topoisomerase I, catalytic core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   1.2       2.8   7.1e+03     181     205 ..     158     182 ..     146     198 .. 0.52
   2 !  321.1   5.7   1.2e-99   3.1e-96       2     231 ..     489     715 ..     488     716 .. 0.98
   3 ?   -2.7   3.6       1.1   2.8e+03     139     225 ..     748     835 ..     722     844 .. 0.66

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2.8
                 HHHHHHHHHHHHHHHHHT-EE-XXX CS
  Topoisom_I 181 ekikayneAnreVAilcnhqrsvpk 205
                 ek k  ++A +e A l  +++   k
  KKY21728.1 158 EKQKIEKKAEKEAAELRKNEKKSAK 182
                 4444444455555544433333333 PP

  == domain 2  score: 321.1 bits;  conditional E-value: 1.2e-99
                 SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH---------TTS-----GGG-BGGGEEE-TT.SEEEEEEE-GGG-E CS
  Topoisom_I   2 sklkgekdfkKYekarkLkkvvekiredykkklkskeilekqlatavylidklaLrvGnekeeeeadtvGccsLrvehvklsekektitldFlGKdsir 100
                 s++kg++d+kK+ekar+Lkk++++ir+dy+k lk + ++e+q+ata+ylid+laLr+Gnek e+ea+tvGccsL++eh++l+++ +t+ +dFlGKdsir
  KKY21728.1 489 SDVKGQSDYKKFEKARELKKHIDRIRKDYRKGLKAEVMAERQRATAMYLIDQLALRAGNEKGEDEAETVGCCSLKYEHITLKPP-NTVIFDFLGKDSIR 586
                 899********************************************************************************9.************** PP

                 EEEEEE--HHHHHHHHHHHTT.--TTSBTTTT--HHHHHHHHTTTSTT--TTHHHHHHHHHHHHHHHHH..--------TTHHHHHHHHHHHHHHHHHT CS
  Topoisom_I 101 yfntvkvdkqvyknlkifckk.kkkgeevFdkintsklNkyLkelmegLsAKvFRTYnASitlqeqLkklekievdesnvaekikayneAnreVAilcn 198
                 y+++vkvd+qv+knlkif+k  k++g+e+Fd+++t+ lNk+L ++m+gL+AKvFRTYnAS t+++ L+++   +v++++v+ek++ay++Anr+VAilcn
  KKY21728.1 587 YYDEVKVDEQVFKNLKIFKKPpKEDGDEIFDRLTTAALNKHLGSYMQGLTAKVFRTYNASHTMSSLLDQI---SVKNGTVHEKKNAYDDANRKVAILCN 682
                 ********************99***********************************************7...79************************ PP

                 -EE-XXXXXXXXXXXXXXXXXXXXXXXXXXXX. CS
  Topoisom_I 199 hqrsvpkqheksmeklkkkiealkedikelkke 231
                 h+r+v+  h+++mekl ++i+ lk++ +++k++
  KKY21728.1 683 HKRTVTAGHANQMEKLGDRIKGLKYQQWRVKQM 715
                 ***************************999986 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.1
                 HHHTTTSTT--TTHHHHHHHHHH..HHHHHHH..--------TTHHHHHHHHHHHHHHHHHT-EE-XXXXXXXXXXXXXXXXXXXXXXX CS
  Topoisom_I 139 kyLkelmegLsAKvFRTYnASit..lqeqLkklekievdesnvaekikayneAnreVAilcnhqrsvpkqheksmeklkkkiealkedi 225
                 +yL e  ++   K F T nA      ++qLk+  + +++ ++  e+ k++++ n++  +    +      +e+s++kl+ +i+ l+ + 
  KKY21728.1 748 EYLVEEEKKKITKKFETQNAKLKenGEKQLKES-ELKERLKSADELAKKFKKENKTKKVEAEGKSPSVDRFEESLKKLDGRINVLQLQA 835
                 566666655556778888887651146778885.5777777788888888777776666655555455667777777777777766655 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.8   0.0   1.3e-74   3.2e-71       8     264 .]     922    1197 ..     920    1197 .. 0.95

  Alignments for each domain:
  == domain 1  score: 239.8 bits;  conditional E-value: 1.3e-74
                  EEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH...HHSS--HHHHH CS
     Pkinase    8 GeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle...rkgslseeeak 101 
                  GeG++++V+k+++++tg+ vA+K+i  ++++ +  ++++rEi+++k+lkh+niv+l +v++++++l+lv+e+++++ l++++    ++g+l+  ++k
  KKY21728.1  922 GEGTYATVFKGRNRQTGELVALKEIHLDSEEGTP-STAIREISLMKELKHENIVNLHDVIHTENKLMLVFEHMDKD-LKKHMDsrgDRGQLDYVTIK 1016
                  9***************************998755.7**************************************77.8888887888899******* PP

                  HHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHSS-S CS
     Pkinase  102 kiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltgkpp 196 
                  ++++q+l+g++++H+++++HrDlKp+N+Li++kg+lK++DFGla+ +    + ++++v+t +Y+AP vl +++ y +++D+Ws+G+i++e++tg+p+
  KKY21728.1 1017 SYMQQLLRGIAFCHENRVLHRDLKPQNLLINSKGQLKLADFGLARAFGIPVNtFSNEVVTLWYRAPDVLlGSRTYNTSIDIWSAGCIMAEMYTGRPL 1113
                  ***********************************************9998889***************999************************* PP

                  TTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS......................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase  197 fsgekgkekvekeldqlekilkilg.etkeklpeasei......................seeakdllkkllkkdpkkRltaeellqhpyl 264 
                  f+   g++    + dql+ki++++g +++ ++p  s++                      +   +dll+++l+  p+ R++a+++l+hp++
  KKY21728.1 1114 FP---GTT----NEDQLQKIFRLMGtPSERSWPGISQFpeykpnfhnyatqdlrillpqiDALGLDLLQRMLQLRPEMRISAADALKHPWF 1197
                  **...444....56788889999998889999999999********************999999**************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0   0.0   2.7e-36     7e-33       8     219 ..     922    1127 ..     919    1139 .. 0.91

  Alignments for each domain:
  == domain 1  score: 114.0 bits;  conditional E-value: 2.7e-36
                   EEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT.CTTTSBH CS
  Pkinase_Tyr    8 GeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk.ekekltl 102 
                   GeG++++V++g+ +    ++ + Va+K ++ +++e + +  ++e+++mk+lkh+niv+l+ v+  e++l++v+e +++ dL+k++ ++ ++ +l++
   KKY21728.1  922 GEGTYATVFKGRNR----QTGELVALKEIHLDSEEGTPSTAIREISLMKELKHENIVNLHDVIHTENKLMLVFEHMDK-DLKKHMDSRgDRGQLDY 1012
                   89**********99....9999**************9***************************************98.9*****98867889*** PP

                   HHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHHHHHHH CS
  Pkinase_Tyr  103 kdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwE 197 
                    ++ s+++q+ +G+++ ++++++Hrdl  +N L++++ + k++DfGLar+       ++ +++ + + + ap +l  ++ ++++ D+Ws G ++ E
   KKY21728.1 1013 VTIKSYMQQLLRGIAFCHENRVLHRDLKPQNLLINSKGQLKLADFGLARAF--GIPVNTFSNEVVTLWYRAPDVLLGSRtYNTSIDIWSAGCIMAE 1106
                   **************************************************9..44445556666777777***987665599999*********** PP

                   HHTTSSGTTTTSHHHHHHHHHH CS
  Pkinase_Tyr  198 iftlgespypglkneevleklk 219 
                   ++t g+  +pg +ne+ l+k+ 
   KKY21728.1 1107 MYT-GRPLFPGTTNEDQLQKIF 1127
                   ***.**********99998874 PP

>> Topo_C_assoc  C-terminal topoisomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   0.2   1.5e-33   3.9e-30       2      70 .]     826     895 ..     825     895 .. 0.97

  Alignments for each domain:
  == domain 1  score: 103.6 bits;  conditional E-value: 1.5e-33
  Topo_C_assoc   2 ekikklklqlkdkeenkevaLgtSkinYlDPRitvawckkhdvpiekiFsktlleKfaWAme.vdedfkf 70 
                    +i+ l+lq+++ke+nkevaLgtSkinY+DPR+tv++ckk+++pie +Fsk+l+eKf+WA++ v+ed+++
    KKY21728.1 826 GRINVLQLQAENKESNKEVALGTSKINYIDPRLTVVFCKKFNCPIETFFSKALREKFEWAIKsVEEDWRY 895
                   58999***************************************************************75 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       4.3   1.1e+04      89     111 ..     298     321 ..     294     349 .. 0.78
   2 ?   12.8   0.1   3.3e-05     0.085     153     197 ..    1019    1061 ..     956    1063 .. 0.75
   3 ?   -1.9   0.5      0.97   2.5e+03     126     155 ..    1190    1218 ..    1144    1220 .. 0.73

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 4.3
                 HHHHHHHHHHHHHHCCHHCH..-S CS
         APH  89 aqlpellealgeflaalhqvd.pa 111
                 ++++e+++ +g++l   h+v+ p 
  KKY21728.1 298 PEAEEVAGFFGSMLNSTHNVEnPV 321
                 68999999******9999996443 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 3.3e-05
                  HHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH  153 laalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedag 197 
                  +++l++  +   + ++lH+Dl+p+Nll++  +g++  + Df++a+
  KKY21728.1 1019 MQQLLRGIAFCHENRVLHRDLKPQNLLIN-SKGQL-KLADFGLAR 1061
                  4555555555678899*************.66776.578888775 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.97
                  HHHHHCHHHCCCGCCTCCHHHHHHHHHHHH CS
         APH  126 lrqlesatarllaselldlleeleeqvlaa 155 
                  +++ + + ++l++++l++ ++++e+q++aa
  KKY21728.1 1190 DALKHPWFNDLPQLQLRQ-QQQREQQAAAA 1218
                  456677777778888888.88888877665 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9   4.1       5.1   1.3e+04      18      95 ..     721     798 ..     711     811 .. 0.77
   2 ?   11.6   0.0   4.9e-05      0.13     125     190 ..     991    1059 ..     961    1102 .. 0.77

  Alignments for each domain:
  == domain 1  score: -4.9 bits;  conditional E-value: 5.1
  Kinase-like  18 ellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeqelairllrg.knpeqAkdhlrlllpfdlvkiqkk 95 
                  + +kk++  ++fe  +    e ++ ++ +l +e  kk  ++++ q+ ++++  g k  ++ + + rl  + +l k  kk
   KKY21728.1 721 SKIKKKKGAAYFELPEDLDEEWIQQHQEYLVEEEKKKITKKFETQNAKLKE-NGeKQLKESELKERLKSADELAKKFKK 798
                  568999999999999999999999999999999999999999999999998.554666777777776666666655555 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 4.9e-05
  Kinase-like  125 eilnkvlqkrset...hkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggfta 190 
                   e + k l+k+      + +l ++  +    ql+r +a  +++ ++h +++++nll + kg+l+l +f+ 
   KKY21728.1  991 EHMDKDLKKHMDSrgdRGQLDYVTIKSYMQQLLRGIAFCHENRVLHRDLKPQNLLINSKGQLKLADFGL 1059
                   4455555555544454566666665555589************************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2340  (0.130515); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.22u 0.33s 00:00:01.55 Elapsed: 00:00:00.57
# Mc/sec: 6503.05
//
Query:       KKY21729.1  [L=1051]
Description: putative succinate dehydrogenase flavoprotein subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.2e-124  414.8   2.8     7e-124  414.1   2.8    1.4  1  FAD_binding_2   FAD binding domain
    6.4e-44  149.0   1.0    1.3e-43  148.0   1.0    1.6  1  Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
    8.6e-40  136.2   0.0    1.7e-39  135.3   0.0    1.5  1  AAA             ATPase family associated with various cellula
    2.2e-06   27.1   0.8     0.0013   18.0   0.1    2.8  3  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    2.7e-05   23.9   0.1    5.9e-05   22.8   0.1    1.6  1  AAA_lid_3       AAA+ lid domain
    6.2e-05   22.2   0.7      0.016   14.3   1.4    2.3  2  GIDA            Glucose inhibited division protein A
     0.0001   21.7   0.2      0.026   13.8   0.0    2.3  2  Thi4            Thi4 family
    0.00042   20.5   0.0      0.002   18.2   0.0    2.1  2  AAA_2           AAA domain (Cdc48 subfamily)
    0.00046   20.5   0.0      0.016   15.5   0.0    2.4  2  AAA_22          AAA domain
    0.00083   19.4   0.0     0.0026   17.7   0.0    1.9  1  AAA_5           AAA domain (dynein-related subfamily)
     0.0084   15.4   0.1      0.019   14.2   0.1    1.6  1  FAD_binding_3   FAD binding domain
  ------ inclusion threshold ------
      0.013   14.6   0.0      0.023   13.8   0.0    1.3  1  DUF815          Protein of unknown function (DUF815)
      0.028   14.8   0.1       0.28   11.6   0.0    2.2  2  AAA_16          AAA ATPase domain
      0.048   13.4   0.0       0.11   12.3   0.0    1.5  1  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
      0.061   13.6   0.0       0.16   12.2   0.0    1.7  1  AAA_28          AAA domain
       0.07   12.7   1.3       0.22   11.1   1.3    1.9  1  DAO             FAD dependent oxidoreductase
      0.094   12.9   0.0       0.24   11.6   0.0    1.7  1  AAA_33          AAA domain
       0.16   11.4   0.0       0.38   10.3   0.0    1.6  1  AAA_7           P-loop containing dynein motor region
       0.81    8.3   2.8       0.82    8.3   0.5    2.1  3  HI0933_like     HI0933-like protein


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  414.1   2.8  7.4e-127    7e-124       1     417 []     466     861 ..     466     861 .. 0.98

  Alignments for each domain:
  == domain 1  score: 414.1 bits;  conditional E-value: 7.4e-127
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    D++V+G+G+AGL+AA  +ae+G ++a+++k ++++++t+++qGgi+a+l +++     kd++++h++dt+k++d+l+dq+++++++++ap+ v eL
     KKY21729.1 466 DAVVVGAGGAGLRAAFGLAEKGFNTACITKLFPTRSHTVAAQGGINAAL-GNM----HKDDWRWHMYDTVKGSDWLGDQDAIHYMTREAPASVIEL 556
                    89***********************************************.777....4799*********************************** PP

                    HHTT----BCCTSSB-EEE-TT-SST.......EEEE-.STT-......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTT CS
  FAD_binding_2  97 eelgvpfsrtedgpvdvrelGglsat.......artlhdaadarretlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesg 185
                    e++g+pfsrtedg++++r +Gg+s++        r+++ aad+      tghall++l+ + + ++  ++ +++a++L++edg++ G+ + n+e+g
     KKY21729.1 557 ESYGCPFSRTEDGKIYQRAFGGQSKEygkggqaYRCCA-AADR------TGHALLHTLYGRSLMHNANYFIEYFALDLLMEDGECKGVLAYNQEDG 645
                    ********************************999999.****......*********************************************** PP

                    CEEEEEESEEEE-----GG..........GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTBB--THHHHTT-EEE-TT CS
  FAD_binding_2 186 revrirakavvlatgGfgrallkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgiLitealrgeGgilvdkd 281
                    + +r+ra+++vlatgG+gr          a++++t+a+++tGdg a+++rag++ +d  +e+vqfhPt+++    g+g+Lite+ rgeGg+l++++
     KKY21729.1 646 TLHRFRAHNTVLATGGYGR----------AYFSCTSAHTCTGDGMAMVARAGLPNQD--LEFVQFHPTGIY----GAGCLITEGSRGEGGYLLNSE 725
                    *******************..........*************************999..************....********************* PP

                    SSBTH.......GGGS-HHHHHHHHH.HHHHTTTS....CCBEEEE-TT.SSHHHHHHHSHHHHHHHHHCCT......S-TTTSEEE.......EE CS
  FAD_binding_2 282 GrrFm.......nelasrdvvsrailekeiaeggs....eanvyldashgldaegleatleaineeaangldkdfgrgidpadrpipgpfyavkvv 366
                    G+rFm       ++lasrdvvsr+++  ei+eg++    ++++yl +sh l+ae l+++l++i e+a  + +      +d +++pip       v 
     KKY21729.1 726 GERFMeryaptaKDLASRDVVSRSMT-MEIREGRGvgpdKDHIYLQLSH-LPAEVLHERLPGISETASIFSG------VDVTKQPIP-------VI 806
                    **************************.**********************.**********************......*********.......** PP

                    EEEEEES-EEEBETTSBE....STTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 367 paqhytmgGvetdengrv....ldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                    p++hy+mgGv+t ++g+v     + +++++pGL+A+Ge+a+++vhganrlg+nsl
     KKY21729.1 807 PTVHYNMGGVPTKYTGEVltvdENGKDKVVPGLFACGEAACVSVHGANRLGANSL 861
                    ******************9988888999*************************98 PP

>> Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.0   1.0   1.4e-46   1.3e-43       1     128 []     916    1051 .]     916    1051 .] 0.97

  Alignments for each domain:
  == domain 1  score: 148.0 bits;  conditional E-value: 1.4e-46
                      .HHHHHHHHHHSSSSB-HHHHHHHHHHHHHHHHHHTTB--S---SSS-HHHHHHHHHHHHHHHHHHHHHHHHH--S-BTTBEBTTS-SEETTT CS
  Succ_DH_flav_C    1 rkeLgkimqkkvgvfRteegLkealkelkelrerlknvkvtdkskvaNqelvealelanllelAeaiaksAlaRkESrGaHaredfperdDen 93  
                      r++++k+mq++v+vfRt+e+L+++++++ ++ e++++++++d+s+++N++lvealel+nll++A+++a++A +RkESrGaHaredf+erdDen
      KKY21729.1  916 RSAMQKTMQTDVSVFRTQESLDHGVEQIIKVDESYDQIGIKDRSMIWNSDLVEALELRNLLTCATQTATAAANRKESRGAHAREDFTERDDEN 1008
                      679****************************************************************************************** PP

                      -SEEEEE...TT-SS-EEEEEE--GGG-........-S---SS CS
  Succ_DH_flav_C   94 wlkhtlasldaakeeveleyepveletl........kpkeRsY 128 
                      w+khtl+++++ +++v+l y+ v  +tl        +p +R+Y
      KKY21729.1 1009 WMKHTLTWQKTPHQKVDLGYRAVVGTTLdeneckavPPFKRTY 1051
                      ********************99999999988888889999998 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.3   0.0   1.8e-42   1.7e-39       2     131 ..     219     350 ..     218     351 .. 0.95

  Alignments for each domain:
  == domain 1  score: 135.3 bits;  conditional E-value: 1.8e-42
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvk 97 
                 ll+GppGtGKTl+a+ava+ ++++f+++ gsel++kyvge+++ +relf+ a++k+  +i+f+DEida++++r     + ++e +r++ +L+t+ldg++
  KKY21729.1 219 LLFGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKK-ACIIFFDEIDAIGGARfddGAGGDNEVQRTMLELITQLDGFD 316
                 8*****************************************************98.9***************996566889999************** PP

                 TSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  98 kkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 ++ +++ v+ atnrp++ldpal+r gR+drkie++
  KKY21729.1 317 SR-GNIKVMFATNRPSTLDPALMRpGRIDRKIEFS 350
                 *7.66***************************997 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   1.4e-06    0.0013       1      31 [.     465     499 ..     465     525 .. 0.80
   2 ?   -2.0   0.0       1.8   1.7e+03      87     110 ..     639     662 ..     624     685 .. 0.78
   3 !    6.3   0.0    0.0051       4.8     246     278 ..     812     846 ..     803     860 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.4e-06
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEE....T CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlve....l 31 
                  +d vv+G+G AGl+aa  la++g++++++      
   KKY21729.1 465 YDAVVVGAGGAGLRAAFGLAEKGFNTACITklfpT 499
                  588**************************544432 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.8
                  ETEEECTCEEEEEESEEEE---EE CS
                  xxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  87 lekkkegdeekiaydklvlAtGss 110
                    ++++g  +++ +++ vlAtG+ 
   KKY21729.1 639 AYNQEDGTLHRFRAHNTVLATGGY 662
                  3455668899999*********74 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0051
                  HCCT-EEEETTEE.E--TTSBES.STTEEE-GGGC CS
                  xxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2 246 eklglelderggi.vvdeflrtn.vpgiyaiGDva 278
                  +  g++++ +g +  vde+++ + vpg++a+G  a
   KKY21729.1 812 NMGGVPTKYTGEVlTVDENGKDKvVPGLFACGEAA 846
                  557899988888879*****9999********988 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   6.2e-08   5.9e-05       4      44 ..     376     416 ..     373     417 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 6.2e-08
   AAA_lid_3   4 lkeLAerTeGySGADlaalcreAallAlrrgikeitmedfe 44 
                 ++ + +++++ +GA+l ++  eA++ A+r  +k  t++df 
  KKY21729.1 376 WELISRLCPNATGAELRSVATEAGMFAIRARRKVATEKDFL 416
                 566889*********************************95 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   1.4   1.7e-05     0.016       1      32 [.     466     497 ..     466     520 .. 0.80
   2 ?    4.9   0.0     0.013        12     116     169 ..     622     681 ..     580     711 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-05
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEES-G CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLithkl 32 
                 d +V+G+G AG+ AA+ +a++G++++ it+ +
  KKY21729.1 466 DAVVVGAGGAGLRAAFGLAEKGFNTACITKLF 497
                 579**********************9996544 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.013
                 S-EEEEEECTTEEEEEEETTS-.....EEEECEEEE--TT-BT-EEEETTEEEESSC.TT CS
        GIDA 116 eeveeliveekkvkgvvtedge.....tikakavviatGtflkgkihigekelsaGr.lg 169
                   + +l++e++++kgv+  ++e      ++a+++v+atG + ++   + + ++ +G  ++
  KKY21729.1 622 YFALDLLMEDGECKGVLAYNQEdgtlhRFRAHNTVLATGGYGRAYFSCTSAHTCTGDgMA 681
                 556678899999***98766542223357888***********99999888877776454 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.8e-05     0.026      17      48 ..     464     494 ..     457     512 .. 0.89
   2 ?    5.4   0.0      0.01       9.5     207     233 ..     831     858 ..     818     859 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.8e-05
                 EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEE CS
        Thi4  17 esDvvivGaGssGLtaayylakkpdlkvaile 48 
                 e D v+vGaG +GL aa+ la+k ++++a + 
  KKY21729.1 464 EYDAVVVGAGGAGLRAAFGLAEK-GFNTACIT 494
                 789********************.99988775 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.01
                 HECEEETTEEE-THHH.HHHHT-EB--S CS
        Thi4 207 ktrevvpnlyvaGmev.aevdganRmGp 233
                 +  +vvp+l+++G ++   v+ganR+G+
  KKY21729.1 831 GKDKVVPGLFACGEAAcVSVHGANRLGA 858
                 4568*********8652689******97 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.1e-06     0.002       7     104 ..     219     310 ..     214     326 .. 0.73
   2 ?   -2.4   0.0       4.7   4.5e+03      30      62 ..     917     949 ..     877     953 .. 0.63

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.1e-06
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHHHHHHHH CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqil 103
                 ll gp g+Gkt+ a+a+a+  ++    ++ir+  sel +    e +++v +l      + + ++  i+++DEid i   +        ++Vqr +L ++
  KKY21729.1 219 LLFGPPGTGKTLCARAVANRTDA----TFIRVIGSELVQkyVGEGARMVREL----FEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELI 309
                 5679*****************96....9***999999992222333333333....3455666778**********99633444445579******998 PP

                 H CS
       AAA_2 104 e 104
                  
  KKY21729.1 310 T 310
                 5 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.7
                 ....-EEEEEGGG-------THHHHHHHHHTTT CS
       AAA_2  30 kkekkliradaselleeeevehlvsrligappg 62 
                 +  +k +  d s + ++e ++h v++ i   + 
  KKY21729.1 917 SAMQKTMQTDVSVFRTQESLDHGVEQIIKVDES 949
                 344556666777777788888888877766655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.7e-05     0.016       8      30 ..     218     240 ..     213     248 .. 0.86
   2 ?    2.3   0.0       0.2   1.9e+02      70     127 ..     257     325 ..     241     329 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.7e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqld 30 
                  +++G++GtGKT+++r ++++ d
  KKY21729.1 218 ALLFGPPGTGKTLCARAVANRTD 240
                 589****************9984 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.2
      AAA_22  70 aerlsseellealeqalraravielliiDEaqhlr....s..........eealeeLrsllnl.srkgvqliL 127
                 +   +  ++++ l + +r++++  ++  DE++ +                 ++le + +l  + sr ++++ +
  KKY21729.1 257 G---EGARMVRELFEMARTKKA-CIIFFDEIDAIGgarfDdgaggdnevqRTMLELITQLDGFdSRGNIKVMF 325
                 4...556677777777777777.9**********776551556667777788888887777667888888876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.8e-06    0.0026       3      77 ..     219     286 ..     217     293 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.8e-06
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG- CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEvera 77 
                 lL GppGtgK+  a+ +a ++ +++  v +++      l++++   +g +     +l + ar  +++i+++DE++ +
  KKY21729.1 219 LLFGPPGTGKTLCARAVANRTDATFIRVIGSE------LVQKYVG-EGARMV--RELFEMARtkKACIIFFDEIDAI 286
                 89********************9999999876......8888883.333333..44444444459*********965 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1     2e-05     0.019       2      37 ..     465     500 ..     464     512 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2e-05
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSC CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttv 37 
                    +d ++VGaG aGl +a  L+e+G ++ +++k   t 
     KKY21729.1 465 YDAVVVGAGGAGLRAAFGLAEKGFNTACITKLFPTR 500
                    7899*************************9986554 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.5e-05     0.023      52     115 ..     214     282 ..     166     286 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.5e-05
      DUF815  52 pannvLLwGarGtGKSslvkallneyaeegLrli..evekedlkelpklvellr...erperfilfvDD 115
                 p + +LL+G  GtGK  + +a+ n++ ++ +r+i  e+ ++ + e  ++v++l    ++++ +i+f D 
  KKY21729.1 214 PPKGALLFGPPGTGKTLCARAVANRTDATFIRVIgsELVQKYVGEGARMVRELFemaRTKKACIIFFDE 282
                 66789*****************************88888999998888888765232678899***997 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00029      0.28      25      50 ..     216     241 ..     187     256 .. 0.76
   2 ?   -0.1   0.0       1.1     1e+03     124     146 ..     264     290 ..     258     313 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00029
      AAA_16  25 elvllsGesGvGKsslvrellralek 50 
                    ll G++G+GK+  +r+++++  +
  KKY21729.1 216 KGALLFGPPGTGKTLCARAVANRTDA 241
                 789*****************975444 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.1
      AAA_16 124 krllallsrderplvlvlDdlq.....w 146
                 ++l++ +++ ++  ++++D+++     +
  KKY21729.1 264 RELFEMART-KKACIIFFDEIDaiggaR 290
                 556677777.777********9555554 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00012      0.11      36      94 ..     218     284 ..     212     289 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvkl.kitsgPvleka.gdlaalltnl......eekdvlfideih 94 
                  ll+GpPG Gkt  a+ +a+  ++++ ++  +  ++k  g+ a ++ +l      ++  ++f dei 
  KKY21729.1 218 ALLFGPPGTGKTLCARAVANRTDATFiRVIGSELVQKYvGEGARMVRELfemartKKACIIFFDEID 284
                 69*******************9988515555555555324545554444222222344577777775 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00017      0.16       4      40 ..     220     261 ..     218     280 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00017
      AAA_28   4 itGgestGKTtlleaLaar....gypvv.pEaareileekla 40 
                 ++G+++tGKT  ++a a+r     ++v+  E + +++ e+++
  KKY21729.1 220 LFGPPGTGKTLCARAVANRtdatFIRVIgSELVQKYVGEGAR 261
                 79***************8876556777777777777766553 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.3   0.00023      0.22       1      52 [.     466     518 ..     466     673 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00023
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylp 52 
                 d v++G+G +Gl +A+ La++g  ++ + k  ++ +  + +++g + ++l +  
  KKY21729.1 466 DAVVVGAGGAGLRAAFGLAEKGfnTACITKL-FPTRSHTVAAQGGINAALGNMH 518
                 78**********************9999999.8888888888888888774333 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00025      0.24       3      39 ..     219     257 ..     218     278 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00025
      AAA_33   3 llvGlpGsGKstlaerllkklg..avllssdtlrrrlfg 39 
                 ll G+pG+GK+  a+ ++++++  ++++   +l ++++g
  KKY21729.1 219 LLFGPPGTGKTLCARAVANRTDatFIRVIGSELVQKYVG 257
                 678***************999966666666666665555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0004      0.38      27      68 ..     209     242 ..     201     286 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0004
       AAA_7  27 elllknkkpvllvGptGtGKtviikdllkkldkekylsltin 68 
                 +l ++  k  ll Gp GtGKt++++ + ++ d         +
  KKY21729.1 209 NLGIDPPKGALLFGPPGTGKTLCARAVANRTDA--------T 242
                 5556667889****************9999983........2 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.5   0.00087      0.82       2      31 ..     466     495 ..     465     521 .. 0.83
   2 ?   -4.3   0.0       5.7   5.4e+03     152     165 ..     649     662 ..     645     665 .. 0.85
   3 ?   -1.9   0.0       1.1   1.1e+03     372     384 ..     833     845 ..     811     852 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00087
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-S CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllek 31 
                  d +v+G+G AGl aA  +a++g +++ + k
   KKY21729.1 466 DAVVVGAGGAGLRAAFGLAEKGFNTACITK 495
                  89*******************998887765 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 5.7
                  EEEESEEEE----S CS
  HI0933_like 152 eleadklvlAtGGl 165
                  +++a+++vlAtGG 
   KKY21729.1 649 RFRAHNTVLATGGY 662
                  68999*******95 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.1
                  BTTSTTEEE-GGG CS
  HI0933_like 372 skkvpgLffaGEv 384
                   k vpgLf +GE 
   KKY21729.1 833 DKVVPGLFACGEA 845
                  5899*******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1051 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.51
# Mc/sec: 6185.58
//
Query:       KKY21730.1  [L=554]
Description: putative t-complex protein 1 subunit delta [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.7e-139  465.6  16.7   2.7e-137  458.4  16.7    2.0  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  458.4  16.7  1.5e-141  2.7e-137       1     486 [.      37     550 ..      37     554 .] 0.94

  Alignments for each domain:
  == domain 1  score: 458.4 bits;  conditional E-value: 1.5e-141
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCT............... CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaag............... 84 
                 +ad+++t+lGP+GmdKm++   g++++TnDG+t+l+ + + hPaak+lv+++++qd e+GDGTt+vv++ag+Ll +a +l+ +g               
  KKY21730.1  37 VADAIRTSLGPRGMDKMIQTGKGETIITNDGNTMLRDMSVMHPAAKMLVNLSSAQDVEAGDGTTSVVVIAGSLLGAADRLLGKGllarhfsldcsltlg 135
                 689***************************************************************************997544222222222222222 PP

                 ..XXHHHHHHHHHHHHHHHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHH.HCHCCCS.EECSCCCEECCCCEECECTTSE CS
  Cpn60_TCP1  85 ..vhpttiiegyekalekaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAv.klieene.keldlgrikvvkieggsledse 179
                   +hpt i e +++a+++a++ L  +++ is    dr +Ll++a+tslssk++s+++  l+ ++vd+v k+i+ ++  ++dl +i+++k+ gg +edse
  KKY21730.1 136 tgIHPTIISESFQRAAAAAVRVLHDMSQPISL--SDRAALLQAASTSLSSKIVSQHSSLLGPIAVDSVlKTIDPRTaDNVDLRNIRIIKKVGGTIEDSE 232
                 228***********************666665..59*********************************99999889********************** PP

                 EESEEEESS--SST.TSSCEEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B.....-HHHHHHHHH CS
  Cpn60_TCP1 180 lveGlvldkgvlsp.dmpkklenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgi.....ddlalhflak 272
                 +++Glvl++ v+++   p+++e+a++ l++++L+++k++++ ++v++d  +++k++k+e+++++++++ki k+++nv+++qk+i     +dl+lhfl +
  KKY21730.1 233 MIDGLVLNQPVIKSsGGPTRIEKARIGLIQFQLSPPKPDMENQIVVNDYRQMDKILKEERTYILNMVKKIQKAKCNVLFIQKSIlrdavNDLSLHFLSR 331
                 *******9999988677******************************************************************999999********** PP

                 CT-EEE-S--HHHHHHHHHHHT--EBSCGGGGGCGC-EEEEEEEECCETTCCEEEEECE....SSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHH CS
  Cpn60_TCP1 273 ngilalrrvkkkdlerlakatGatavssledltpeelGtakkveeekigsekttiieev....ksgkiatillrgatdtvldeieraiedAlnvvknai 367
                  +i+a++ ++++++e l+k tG++++++++++t+++lG+a+ +ee + +  +++ ++++    + +++++i+ rga+  +lde+er+++dAl+v+++++
  KKY21730.1 332 LKIMAIKDIERDEVEFLCKSTGCKPIANIDSFTEDKLGQADLIEEVQASGARYVKVTGIrtsnPLHQTVSIIARGANSLILDEAERSLHDALCVIRCLV 430
                 *********************************************************55444477889******************************* PP

                 HHHEEEETTTCHHHHHHHHHHCCCCTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHHHTTXTTEEEETTTTCEEE.CCCCTXEEEHHH CS
  Cpn60_TCP1 368 edekvvpGGGatelelakklkeyaksvsgeeqlaieafakALevipktLaeNaGldpievlaklraahnkgekelgidvesgeiid.lveagvvDplkv 465
                 +++ +++GGGa e+e+a+ l+++a+ ++g e+++++afa+A+evip tLaeNaGl++i+v+++lr++h+ ge ++g++++sg ++  + +++v++pl v
  KKY21730.1 431 KKKALIAGGGAPEIEIAQSLSQQANALTGTEAICWKAFADAMEVIPTTLAENAGLNSIKVVTDLRYRHKIGEQNAGVSIRSGGVKAnIADEKVLQPLLV 529
                 ***********************************************************************************876488999******* PP

                 HHHHHHHHHHHHHHHHCEEEE CS
  Cpn60_TCP1 466 krqalksAteaastiLridei 486
                  ++a+++A+e++++iLrid+i
  KKY21730.1 530 STSAIELAAETVKMILRIDDI 550
                 ********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 3364.45
//
Query:       KKY21731.1  [L=153]
Description: putative glycine-rich rna-binding protein mitochondrial precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-23   80.8   0.0    6.5e-23   80.4   0.0    1.2  1  RRM_1       RNA recognition motif. (a.k.a. RRM, RBD, or RNP d
     0.0012   18.9   0.0      0.002   18.2   0.0    1.4  1  RRM_7       RNA recognition motif
  ------ inclusion threshold ------
      0.039   13.9   0.0      0.058   13.4   0.0    1.2  1  DbpA        DbpA RNA binding domain
       0.05   13.6   0.1      0.071   13.2   0.1    1.2  1  RRM_3       RNA binding motif
      0.097   12.8   0.2       0.14   12.3   0.2    1.2  1  Limkain-b1  Limkain b1


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0   1.8e-26   6.5e-23       1      70 []       4      74 ..       4      74 .. 0.99

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 1.8e-26
                EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1  1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70
                lf+g+L++ +t+e+L+  F++fG+++++ +v+d  t++s+gf+fV+F sk++A++Al+++n+++++gr+++
  KKY21731.1  4 LFIGGLAWHTTDETLRHGFEQFGSVEEAVVVKDrDTNRSRGFGFVRFSSKDEADEALSKMNNTEFDGRQIR 74
                8*******************************************************************996 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.4e-07     0.002       2      32 ..       2      32 ..       1      72 [. 0.74

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 5.4e-07
       RRM_7  2 rkvFvGGlPiDiteeelkatfkefgkvlvdw 32
                 k+F+GGl +  t+e l + f++fg+v    
  KKY21731.1  2 AKLFIGGLAWHTTDETLRHGFEQFGSVEEAV 32
                59***********************986444 PP

>> DbpA  DbpA RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.6e-05     0.058      48      70 ..      53      75 ..      48      77 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.6e-05
                TT-HHHHHHHHTT--SSS----E CS
        DbpA 48 kekaeevlkalkkkkikGrkvrv 70
                k++a+e+l+++++++++Gr++rv
  KKY21731.1 53 KDEADEALSKMNNTEFDGRQIRV 75
                899*******************9 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1     2e-05     0.071       4      61 ..       4      67 ..       2      83 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2e-05
                EEEEE-SSS--HHHHHHHCHCCS-EC.EE.....EE-TTSSEEEEEESSHHHHHHHHHHHHHC- CS
       RRM_3  4 lklsGlnkelsredikellsklgeva.yv.....dyekgdkegevrFkedeeakkalekateak 61
                l++ Gl  +++ e++++ ++++g+v+  v     d ++    g vrF +++ea +al k+ +++
  KKY21731.1  4 LFIGGLAWHTTDETLRHGFEQFGSVEeAVvvkdrDTNRSRGFGFVRFSSKDEADEALSKMNNTE 67
                567789999999***********775223112224444444599**************998883 PP

>> Limkain-b1  Limkain b1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   3.9e-05      0.14      44      76 ..      46      78 ..      37      86 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.9e-05
  Limkain-b1 44 avlrfanqeaaeralkrleneDvfGnritvsek 76
                  +rf++++ a+ al +++n +  G +i v + 
  KKY21731.1 46 GFVRFSSKDEADEALSKMNNTEFDGRQIRVDHA 78
                579*************************99776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1037.82
//
Query:       KKY21732.1  [L=177]
Description: putativelike protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-36  126.3   0.0    2.4e-36  125.5   0.0    1.4  1  ChaC      ChaC-like protein


Domain annotation for each model (and alignments):
>> ChaC  ChaC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.5   0.0   1.3e-40   2.4e-36      35     178 ..      16     167 ..      10     168 .. 0.93

  Alignments for each domain:
  == domain 1  score: 125.5 bits;  conditional E-value: 1.3e-40
                 EESSSSS-SSS-EEEEEEEEHHH..............-EEEEEEEEE-GGGGGGGGGGGGGSTT..TTEEEEEEEEEE-EETTTS-EEEEEEEEEE-TT CS
        ChaC  35 sstdhRGteekPGrvltLiedee..............gstiGvvyripaeeaeevleyLeeRElvtnGytlkevevylkkdakeekvvlealvyvatik 119
                 + +dhRGt+e+PGrv+tLie                 ++++Gv+y+i +e+ eev+eyL+ RE+  nGyt++ ++v +  d+k     +++lvy++ ++
  KKY21732.1  16 YGEDHRGTPESPGRVVTLIER-SfwetlgdtqymgekDRVWGVAYHIVPERVEEVREYLDIREI--NGYTIQYTPVIP-ADTKLPS--IHCLVYIGLPD 108
                 5679****************7.5599*************************************8..***********8.6645444..5********** PP

                 STTB--S--HHHHHHHHHH-EETTEEHHHHHHHHHHHHHTS-----BHHHHHHHHHHHH CS
        ChaC 120 neqyagdedleeiAkviaaaaGpsGsnaeYlfelakaleklgigirDehLeeleelvkk 178
                 n+q++g+ d e++A+v++++ GpsG+naeYlfel++al++l++++ D h+ +l++ v++
  KKY21732.1 109 NPQFLGAVDPEAVAQVVSTSYGPSGDNAEYLFELEDALNSLSPESGDGHVSDLANRVRR 167
                 ******************************************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.31s 00:00:00.78 Elapsed: 00:00:00.49
# Mc/sec: 1089.86
//
Query:       KKY21733.1  [L=306]
Description: putative ef hand domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-21   73.2   4.6    9.2e-06   24.9   0.0    4.6  4  EF-hand_1   EF hand
      5e-19   67.9   1.9    7.5e-10   38.5   0.0    3.8  4  EF-hand_8   EF-hand domain pair
    9.1e-19   67.7   2.8    7.8e-09   35.9   0.0    3.0  2  EF-hand_7   EF-hand domain pair
    7.3e-18   62.9   2.5    0.00017   21.2   0.0    4.3  4  EF-hand_6   EF-hand domain
    3.8e-15   54.6   4.6    7.5e-06   25.2   0.2    4.4  4  EF-hand_5   EF hand
     0.0032   17.3   0.1        1.2    9.0   0.0    3.3  3  EF-hand_10  EF hand
  ------ inclusion threshold ------
        1.6    8.6   6.3        1.9    8.3   6.3    1.1  1  SPX         SPX domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0024       6.1       5      26 ..     139     160 ..     135     162 .. 0.89
   2 !   24.6   0.0   4.2e-09   1.1e-05       2      27 ..     173     198 ..     172     200 .. 0.93
   3 !   24.9   0.0   3.6e-09   9.2e-06       2      24 ..     203     225 ..     202     230 .. 0.90
   4 !   13.8   2.1   1.2e-05     0.031       3      19 ..     272     288 ..     270     295 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0024
                 HHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkell 26 
                 +Fr + k ++G+++ +E+ ++l
  KKY21733.1 139 LFRAANKSQSGTLTQDELSSAL 160
                 5999999***********9987 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 4.2e-09
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 ++ ++++fD+ g G I++eEf++l++
  KKY21733.1 173 IRVMMQMFDTSGKGSINYEEFVALWR 198
                 788*******************9986 PP

  == domain 3  score: 24.9 bits;  conditional E-value: 3.6e-09
                 HHHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfke 24 
                 ++e+F++fD D++G+I++eEf +
  KKY21733.1 203 WRELFEKFDEDRSGRISLEEFSR 225
                 79*******************76 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 1.2e-05
                 HHHHHHHTTTSSSEEEH CS
   EF-hand_1   3 keiFrefDkDgdGkIdf 19 
                  + F+++D D+dG+I++
  KKY21733.1 272 TDTFKKYDDDRDGYITL 288
                 578************96 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   2.9e-13   7.5e-10       2      52 ..     148     197 ..     147     198 .. 0.92
   2 !   18.5   0.1   5.2e-07    0.0013      29      50 ..     204     225 ..     202     229 .. 0.89
   3 ?    4.3   0.0     0.014        36       8      44 ..     221     255 ..     221     257 .. 0.92
   4 !    7.5   0.1    0.0014       3.5      32      48 ..     275     293 ..     265     294 .. 0.77

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 2.9e-13
   EF-hand_8   2 kgkItreelrrilrilglkk..glseeevdilfrefDtdgdGkisfeEFcvll 52 
                 +g +t++el+++l   + ++  ++ ++ +++++  fDt g+G i++eEF++l+
  KKY21733.1 148 SGTLTQDELSSAL---VNADytSFDPHTIRVMMQMFDTSGKGSINYEEFVALW 197
                 799********99...5567779****************************99 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 5.2e-07
   EF-hand_8  29 dilfrefDtdgdGkisfeEFcv 50 
                 ++lf +fD+d++G+is+eEF  
  KKY21733.1 204 RELFEKFDEDRSGRISLEEFSR 225
                 689*****************75 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.014
   EF-hand_8   8 eelrrilrilglkkglseeevdilfrefDtdgdGkis 44 
                 ee++r l ++g++  ls++ v +l ++f +++ G+++
  KKY21733.1 221 EEFSRSLVAFGYR--LSPQFVSTLYSTFSRKNRGVLG 255
                 79***99888***..*************999999986 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0014
   EF-hand_8  32 frefDtdgdGki..sfeEF 48 
                 f++ D d+dG+i  sfeEF
  KKY21733.1 275 FKKYDDDRDGYItlSFEEF 293
                 9999*******83346666 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   3.1e-12   7.8e-09       3      70 ..     135     197 ..     133     198 .. 0.92
   2 !   17.7   0.2   1.5e-06    0.0038      47      67 ..     204     224 ..     201     228 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 3.1e-12
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 +l+  F++  + ++g l+++el ++l +         +++++ ++ ++++fDt++ G+i+++EF++l 
  KKY21733.1 135 ELFPLFRAANKSQSGTLTQDELSSALVN-----ADYTSFDPHTIRVMMQMFDTSGKGSINYEEFVALW 197
                 68899*******************9998.....8888889999*********************9875 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.5e-06
   EF-hand_7  47 ellfkefDtdkdGvisfdEFl 67 
                 ++lf++fD d++G+is++EF 
  KKY21733.1 204 RELFEKFDEDRSGRISLEEFS 224
                 689****************96 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0005       1.3       5      26 ..     139     160 ..     135     164 .. 0.89
   2 !   13.3   0.0   2.4e-05     0.062       5      26 ..     176     197 ..     172     200 .. 0.84
   3 !   21.2   0.0   6.8e-08   0.00017       2      23 ..     203     224 ..     202     231 .. 0.89
   4 !   15.9   0.6   3.4e-06    0.0088       2      19 ..     271     288 ..     270     295 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0005
   EF-hand_6   5 aFklfDkdgdGkidaeElrkal 26 
                 +F++  k+ +G+++++El +al
  KKY21733.1 139 LFRAANKSQSGTLTQDELSSAL 160
                 799999************9988 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.4e-05
   EF-hand_6   5 aFklfDkdgdGkidaeElrkal 26 
                   ++fD++g G+i++eE++++ 
  KKY21733.1 176 MMQMFDTSGKGSINYEEFVALW 197
                 5689**************9875 PP

  == domain 3  score: 21.2 bits;  conditional E-value: 6.8e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElr 23 
                 +re+F++fD d++G i+ eE+ 
  KKY21733.1 203 WRELFEKFDEDRSGRISLEEFS 224
                 79******************95 PP

  == domain 4  score: 15.9 bits;  conditional E-value: 3.4e-06
   EF-hand_6   2 lreaFklfDkdgdGkida 19 
                 l + Fk++D d+dG+i+ 
  KKY21733.1 271 LTDTFKKYDDDRDGYITL 288
                 5588**********8875 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.059   1.5e+02       5      23 ..     140     158 ..     139     161 .. 0.79
   2 !   11.1   0.0   8.3e-05      0.21       4      24 ..     176     196 ..     173     199 .. 0.88
   3 !   25.2   0.2   2.9e-09   7.5e-06       3      24 ..     205     227 ..     204     228 .. 0.88
   4 !   14.0   0.8     1e-05     0.026       3      18 ..     273     288 ..     271     297 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.059
                 HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt 23 
                 F+a+ + ++G+++ +EL  
  KKY21733.1 140 FRAANKSQSGTLTQDELSS 158
                 777777799********75 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 8.3e-05
                 HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktl 24 
                 + q++D+ g G I+ eE+ +l
  KKY21733.1 176 MMQMFDTSGKGSINYEEFVAL 196
                 579***************765 PP

  == domain 3  score: 25.2 bits;  conditional E-value: 2.9e-09
                 HHHHHH-SS-SSCE-HHHHHH.H CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt.l 24 
                 ++F+++D +++G+Is eE+ + l
  KKY21733.1 205 ELFEKFDEDRSGRISLEEFSRsL 227
                 68*****************8755 PP

  == domain 4  score: 14.0 bits;  conditional E-value: 1e-05
                 HHHHHH-SS-SSCE-H CS
   EF-hand_5   3 dtFqaiDlNgDGkIsk 18 
                 dtF++ D ++DG+I+ 
  KKY21733.1 273 DTFKKYDDDRDGYITL 288
                 89***********975 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00049       1.2      26      43 ..     139     156 ..     137     159 .. 0.91
   2 ?    2.0   0.0     0.077     2e+02      27      48 ..     177     198 ..     173     200 .. 0.81
   3 ?    1.7   0.2     0.096   2.5e+02      24      43 ..     204     223 ..     203     227 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00049
  EF-hand_10  26 LFkkcDkSksgrLegeEi 43 
                 LF+ + kS+sg+L + E+
  KKY21733.1 139 LFRAANKSQSGTLTQDEL 156
                 9*************9997 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.077
  EF-hand_10  27 FkkcDkSksgrLegeEieeFyk 48 
                  +  D+S +g+++ eE++   +
  KKY21733.1 177 MQMFDTSGKGSINYEEFVALWR 198
                 5677************987666 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.096
  EF-hand_10  24 ekLFkkcDkSksgrLegeEi 43 
                 ++LF k D+ +sgr+  eE+
  KKY21733.1 204 RELFEKFDEDRSGRISLEEF 223
                 689**********9988887 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   6.3   0.00073       1.9      55     166 ..      35     144 ..       6     215 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00073
         SPX  55 dskkksse.rtepstsaaadesgnsaadasssepkdeae...........slprrsplsrssrssssygglvssppsansssssddssesnpadsssss 141
                 +s        ++ps++aa+++s+++ +   ++                  ++p+++     ++ +ss+++l+s+pp +n + + ++s+++ +++  +s+
  KKY21733.1  35 PS-----PgYNAPSNPAARKPSPHQPQS-YQK------PlpsrpqsqysaTTPPSQYAPPAHSAQSSFSRLQSPPPPQNYGYGPPPSNPAASRPVVQSR 121
                 11.....122222222222222222211.111......12223334555699999999999******************************99999999 PP

         SPX 142 sssesesssssspsllrrlfseses 166
                 ++ ++ +++++sp+l+  +   + +
  KKY21733.1 122 PPRTPVPPGPDSPELFPLF-R-AAN 144
                 9999999999999998866.3.222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2084.66
//
Query:       KKY21734.1  [L=409]
Description: putative extracellular cellulase allergen asp f7 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-07   29.4   3.7    1.1e-06   28.9   0.2    3.2  3  DPBB_1           Lytic transglycolase
    9.8e-05   22.2   0.5    0.00025   20.9   0.5    1.7  1  Barwin           Barwin family
    0.00019   21.4   0.8    0.00052   20.0   0.8    1.8  1  Pollen_allerg_1  Pollen allergen
  ------ inclusion threshold ------
       0.26   11.1   1.4       0.42   10.4   1.4    1.3  1  RNA_lig_T4_1     RNA ligase
       0.89    7.7   4.6        1.3    7.1   4.6    1.2  1  SEN1_N           SEN1 N terminal
        4.4    5.7   8.3          6    5.3   8.3    1.1  1  Macoilin         Macoilin family


Domain annotation for each model (and alignments):
>> DPBB_1  Lytic transglycolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.3   1.3e+04      47      55 ..      50      58 ..      32      71 .. 0.69
   2 !   28.9   0.2   3.6e-10   1.1e-06      34      83 .]     256     307 ..     212     307 .. 0.82
   3 ?   -1.7   0.1       1.2   3.7e+03      25      51 ..     369     393 ..     350     396 .. 0.52

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.3
                EEEEE---- CS
      DPBB_1 47 VtitDrgpf 55
                  + D +p+
  KKY21734.1 50 TIASDECPS 58
                457788886 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 3.6e-10
                 T-EEEE.TT.--EEEEEEEE----STTECEEE-HHHHHHHT-TTTS-EEEEE CS
      DPBB_1  34 gtycrv.ls.gksvtVtitDrgpfppgrhiDLSkaAfeklakpraGvipVky 83 
                 g  ++v +  g+s+t +i+D +  +  +h+DL   Af++la+++ Gvi+V++
  KKY21734.1 256 GACISVtGPsGNSITAMIVDQCSGCGTNHLDLFSDAFSALADQSLGVIDVTW 307
                 44455554469***************************************86 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.2
                 EEE-SSS-TT-EEEETT--EEEEEEEE CS
      DPBB_1  25 taahktlplgtycrvlsgksvtVtitD 51 
                 ++   t    + +rv s +  +Vt+ D
  KKY21734.1 369 SSGTGT--TTVDVRVTSSTGSVVTVED 393
                 434444..2334555333555555555 PP

>> Barwin  Barwin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.5   8.5e-08   0.00025      53     118 ..     248     311 ..     239     312 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 8.5e-08
      Barwin  53 gargqascGkclrvtntatnaqvtvrivdqcsngG...ldldvalfnkldtdGvGyqqGalrvdyqfvd 118
                 +  + a cG c+ vt  + ++++t+ ivdqcs  G   ldl    f++l  + +G+    + v +q v+
  KKY21734.1 248 NWENSANCGACISVTGPS-GNSITAMIVDQCSGCGtnhLDLFSDAFSALADQSLGV----IDVTWQIVQ 311
                 4567789********975.789*********9986323666677777776666654....455555555 PP

>> Pollen_allerg_1  Pollen allergen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.8   1.7e-07   0.00052      11      78 ..     328     394 ..     305     395 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.7e-07
  Pollen_allerg_1  11 p.ylavlvenvggagdisaVevkqggsseWtpmsrnwGavWqlnssplkgplsfrvtssdgktlvadnV 78 
                        ++++ v+n +    +++ ev   g s+Wt+ +r+  + ++++s+       +rvtss+g ++++++V
       KKY21734.1 328 AyWFSMQVVNAN--EPVASLEVSTDGGSTWTSATRQTYNFFEISSGTGTTTVDVRVTSSTGSVVTVEDV 394
                      339999997777..79*******99999*****************98899****************998 PP

>> RNA_lig_T4_1  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.4   0.00014      0.42     106     186 ..     103     182 ..      59     192 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
  RNA_lig_T4_1 106 leknlTavfElcddsfeehivaypeekagLyLhglnentpefstesseevakfakefgfiktklitlesleevkkfleeva 186
                   +++++T+++E  ++s      a++ e+++ + + l ++t+  +t +++ v++ a+++++ +t+++ ++ le+vkk +++  
    KKY21734.1 103 VTSSITVTAETSTSSAPSTSSATTAEEPT-TTIYLTSTTTSTVTVDESTVTAAATTYEPATTSTVSISALEAVKKAVAADT 182
                   56788999999888887777777755554.777899999************************************998433 PP

>> SEN1_N  SEN1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.6   0.00045       1.3     353     453 ..     103     203 ..      78     215 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00045
      SEN1_N 353 gltalletlltfkdeerslltstsakfvnellnv..ldl.vlk.hadtivdvalktkpedkanselskaareviekalalDikslaeelekLsagkqei 447
                 + +++  t +t +++  s +++t+a+  ++++ +  + + ++    +t+++ a+  +p   ++s++s +a+e ++ka a D+ s +e +++ s++++  
  KKY21734.1 103 VTSSITVTAETSTSSAPSTSSATTAEEPTTTIYLtsTTTsTVTvDESTVTAAATTYEP--ATTSTVSISALEAVKKAVAADTSSSSEVSSATSSAAS-- 197
                 4555555555555554444444444444444444223335566466666645555555..69**********************9999999988877.. PP

      SEN1_N 448 lqsgvl 453
                 ++s+++
  KKY21734.1 198 SSSASS 203
                 444433 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   8.3     0.002         6     252     362 ..     108     206 ..      59     243 .. 0.35

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.002
    Macoilin 252 eleyrekkksakssrsdskkkhehn..esvdsklqekeymenkskskrlsksessgsesellveesvkskssssssssnknskkasagsagssnssskk 348
                 +++ + +++sa s++s ++ ++  +    + + ++     e++++++  + + +++s+ ++ + e vk+  ++++ss              ss+ ss++
  KKY21734.1 108 TVTAETSTSSAPSTSSATTAEEPTTtiYLTSTTTSTVTVDESTVTAAATTYEPATTSTVSISALEAVKKAVAADTSS--------------SSEVSSAT 192
                 12222111111111111111111111211111122222222222222222222222222222222222222222222..............22222222 PP

    Macoilin 349 hsessksvtsssss 362
                  s++s+s +ss+ss
  KKY21734.1 193 SSAASSSSASSTSS 206
                 22222222222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1667  (0.0929779); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.36s 00:00:01.14 Elapsed: 00:00:00.63
# Mc/sec: 1959.17
//
Query:       KKY21735.1  [L=685]
Description: hypothetical protein UCRPC4_g03502 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.24   11.2   1.3       0.51   10.1   1.3    1.5  1  Vpu       Vpu protein


Domain annotation for each model (and alignments):
>> Vpu  Vpu protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.3   2.8e-05      0.51      14      62 ..     429     477 ..     418     486 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 2.8e-05
         Vpu  14 valiiaivvWtivyreykkikkqkeierlikrireraedSgnESdGeee 62 
                 +a i  i  W+ v r+y+ +k  k+ ++++++i    +d + E + e+e
  KKY21735.1 429 LATIKDIRTWKQVNRQYRTHKFWKKENERLRKIYHSDDDNDVEIQDEQE 477
                 567778999******************************9999888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 4522.59
//
Query:       KKY21736.1  [L=472]
Description: putative pdi related protein a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-33  115.3   0.2    4.3e-26   90.9   0.1    2.4  2  Thioredoxin    Thioredoxin
    1.5e-08   35.0   0.4      4e-05   24.0   0.4    2.6  1  Thioredoxin_2  Thioredoxin-like domain
    2.7e-06   27.4   0.0      0.013   15.4   0.0    3.1  3  Thioredoxin_6  Thioredoxin-like domain
    9.4e-06   25.2   0.0    0.00013   21.5   0.0    2.1  2  OST3_OST6      OST3 / OST6 family, transporter family
    2.1e-05   24.5   8.5    0.00091   19.1   0.0    3.2  3  TraF           F plasmid transfer operon protein
    0.00024   21.3   0.0        1.4    9.3   0.0    4.0  4  Thioredoxin_8  Thioredoxin-like
    0.00082   19.5   0.0     0.0024   18.0   0.0    1.8  1  Thioredoxin_7  Thioredoxin-like
     0.0029   17.5   0.1      0.015   15.3   0.0    2.0  2  AhpC-TSA       AhpC/TSA family
  ------ inclusion threshold ------
      0.014   15.5   0.0      0.038   14.2   0.0    1.7  1  QSOX_Trx1      QSOX Trx-like domain
      0.082   13.0   0.0        2.4    8.3   0.1    2.5  2  Thioredoxin_3  Thioredoxin domain


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.1   2.4e-29   4.3e-26       2     101 ..      29     135 ..      28     137 .. 0.88
   2 !   22.1   0.0   6.3e-08   0.00011      42     102 ..     179     239 ..     173     240 .. 0.86

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 2.4e-29
                  EEESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT..TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTE.....EEEEEESS- CS
  Thioredoxin   2 vlvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd..kvklakvdvdenedlakkyevegiPtlklfkngk.....evkkyegar 92 
                  vl++ ++n+++ +ak++++ +veFyApwCghC++l+P +ek+a++l++  kv  +++d ++n+  + +++v+g+Ptlk+++         v++y+gar
   KKY21736.1  29 VLQVDAKNYDSLIAKSNHTSIVEFYAPWCGHCQNLKPAYEKAAKNLAGlaKVAAVNCDDESNKAFCGNMGVQGFPTLKIVRPTSksgkpVVEDYQGAR 126
                  678899******************************************66777777777788999**************965433444899******* PP

                  HHHHHHHHH CS
  Thioredoxin  93 ekeklaafl 101
                  +++++++++
   KKY21736.1 127 TAKAIVDTI 135
                  *****9987 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 6.3e-08
                  HHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTE.EEEEEESS-HHHHHHHHHH CS
  Thioredoxin  42 klaeelkdkvklakvdvdenedlakkyevegiPtlklfkngk.evkkyegarekeklaaflk 102
                  +la ++   + +a++ ++e    ++k++++++Ptl+l++ g+ e+  y+g+ +k++l+aflk
   KKY21736.1 179 ALAVDFLSSISFAQIRNKET-AAVEKFSITSFPTLLLLPGGDkEALVYQGEMKKDELVAFLK 239
                  55666666899999988776.77899***************988999*************98 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.4   2.2e-08     4e-05       3     109 .]      43     238 ..      41     238 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 2.2e-08
  Thioredoxin_2   3 gngkpvlvvftdpdCpyCkklkkelkel.ddvtvrvllfplkpsfepkavaiwcakekkkafkd................................ 65 
                    +++   +v f++p+C+ C+ lk   ++  +++              +k++a+ c++e +kaf +                                
     KKY21736.1  43 KSNHTSIVEFYAPWCGHCQNLKPAYEKAaKNLAGL-----------AKVAAVNCDDESNKAFCGnmgvqgfptlkivrptsksgkpvvedyqgart 127
                    566677899**************999984555444...........788899999999989998999999999*********************** PP

  Thioredoxin_2  66 ..................................................................ieenvelarkygvrgtPtivfldgk.eiva 94 
                                                                                       +++ + ++k+ ++++Pt+++l+g  ++++
     KKY21736.1 128 akaivdtivdkipnhvkrvkdsdldewlaqgsdtakailftekgttsallralavdflssisfaqiRNKETAAVEKFSITSFPTLLLLPGGdKEAL 223
                    *****************************************************************99999999999********99888888**** PP

  Thioredoxin_2  95 rlpGyvpaeeleall 109
                    +++G ++++el a l
     KKY21736.1 224 VYQGEMKKDELVAFL 238
                    **********98876 PP

>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0039         7       7      89 ..      62     153 ..      59     175 .. 0.76
   2 !   15.4   0.0   7.3e-06     0.013       9      73 ..     174     240 ..     167     245 .. 0.88
   3 ?    1.6   0.0      0.12   2.2e+02     141     183 ..     400     442 ..     359     446 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0039
                    THHHHHHHHTTT-T.TSEEEEE--HHHHHH.....TT--S.SEEEEEETTTTEEEEEETH...T--HHHHHHHHHHH---SEEE-SHHHHHH CS
  Thioredoxin_6   7 eeseiFekvakelkgdvrfgvtkskevadk.....lgvke.pavllfrkfdeekvkydge...kitvddlkkfieknslplvreltpenaee 89 
                    +++ ++ek+ak+l g   +++++ ++ ++k     +gv++ p+++++r+++++   + ++     t++ +++ i +++ ++v  + +  ++e
     KKY21736.1  62 NLKPAYEKAAKNLAGLAKVAAVNCDDESNKafcgnMGVQGfPTLKIVRPTSKSGKPVVEDyqgARTAKAIVDTIVDKIPNHVKRVKDSDLDE 153
                    67889*********999999999888555566666****99*******98885544444444668999999999888888887776666655 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 7.3e-06
                    HHHHHHHTTT-T.TSEEEEE--HH..HHHHTT--S.SEEEEEETTTTEEEEEETHT--HHHHHHHHHH CS
  Thioredoxin_6   9 seiFekvakelkgdvrfgvtkske..vadklgvke.pavllfrkfdeekvkydgekitvddlkkfiek 73 
                    s  +++ a ++ + ++f+ + +ke  +++k+ +++ p++ll  + d+e   y+ge +++d+l+ f+++
     KKY21736.1 174 SALLRALAVDFLSSISFAQIRNKEtaAVEKFSITSfPTLLLLPGGDKEALVYQGE-MKKDELVAFLKQ 240
                    66788899999999****999999889999**9999******************9.8********987 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.12
                    HHH.HTT--GGG-SEEEEEESSSS-EEEETTSS--HHHHHHHHH CS
  Thioredoxin_6 141 ple.ylglsssdlPvivivdsashkykyppkdefspeklkeFlk 183
                     l+  l++s sd+ vi+ v+ +++ +  + ++++s+++l+ +++
     KKY21736.1 400 TLKkALDISGSDVKVIA-VNARRGWWRSYTSEDLSVSSLESWID 442
                    44447788888888888.77566666666688888888888886 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   7.1e-08   0.00013       8     154 ..      25     156 ..      20     177 .. 0.85
   2 ?    1.3   0.0     0.097   1.7e+02      76     136 ..     190     241 ..     174     257 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 7.1e-08
   OST3_OST6   8 kksngviklndenykellkgprdysvvvllTatspqfkCelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkk 106
                 kks  v++++ +ny++l++ + + + +v + a      C  C++++p +e+ ak           k+  ++ d + +k +   +g++  P l ++ p++
  KKY21736.1  25 KKS-PVLQVDAKNYDSLIA-KSNHTSIVEFYAP----WCGHCQNLKPAYEKAAKNLAGL-----AKVAAVNCDDESNKAFCGNMGVQGFPTLKIVRPTS 112
                 444.9*************6.9999999999998....7*****************9999.....599999999999*********************87 PP

   OST3_OST6 107 gpkeskkkdtydfsrggfdaealakfisertgvkirikrppnyskiii 154
                 +     k+  ++  +g  +a+a+++ i ++++++++  ++ ++ ++++
  KKY21736.1 113 KSG---KP-VVEDYQGARTAKAIVDTIVDKIPNHVKRVKDSDLDEWLA 156
                 665...44.444445677999**********99998888888777765 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.097
   OST3_OST6  76 FakvdfdegkdvFqklglnsaPhlllfppkkgpkeskkkdtydfsrggfdaealakfiser 136
                 Fa++  +e    ++k+ ++s P lll p  +  k   ++  y+    +++ ++l++f+++ 
  KKY21736.1 190 FAQIRNKE-TAAVEKFSITSFPTLLLLPGGD--K---EALVYQG---EMKKDELVAFLKQV 241
                 44444433.456789************9933..3...4444443...34445555555554 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   5.1e-07   0.00091     123     222 ..      39     134 ..      23     136 .. 0.81
   2 !    5.2   0.0     0.009        16     175     220 ..     190     235 ..     176     239 .. 0.72
   3 ?   -2.2   7.1       1.7     3e+03      14      54 ..     246     286 ..     237     303 .. 0.42

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 5.1e-07
        TraF 123 alkklakeygLlfFyrgkcpyceaqapilqafadky.gl.evraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlvdpksqkvvpva...aGllsl 216
                  l + +++  ++ Fy++ c+ c+ + p +++ a++  gl +v aV++d++ ++ +           ++gv+ +P+l +v+p s+  +pv    +G+ ++
  KKY21736.1  39 SLIAKSNHTSIVEFYAPWCGHCQNLKPAYEKAAKNLaGLaKVAAVNCDDESNKAFCG---------NMGVQGFPTLKIVRPTSKSGKPVVedyQGARTA 128
                 4445577888999*******************999866548***********99999.........9****************9999985333566666 PP

        TraF 217 deleer 222
                 + +++ 
  KKY21736.1 129 KAIVDT 134
                 666665 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.009
        TraF 175 lpnarvd.kgqaarlgvkrtPalvlvdpksqkvvpvaaGllsldele 220
                 ++++r + +   ++++++++P+l+l     +k + v +G +  del+
  KKY21736.1 190 FAQIRNKeTAAVEKFSITSFPTLLLLPGG-DKEALVYQGEMKKDELV 235
                 6665554045556**********998777.77779999998888886 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.7
        TraF  14 ekkekakppkaakpalkeptseesatesaaelrkeleelld 54 
                 + ++++k ++++kp++++++s+ s  +s a    +  e+ +
  KKY21736.1 246 PDPAPKKTKASKKPKPAKSSSSASSRFSKASASHQSSEASE 286
                 23333333333333333333333333333333333333333 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00079       1.4       5      57 ..      49      97 ..      45      98 .. 0.84
   2 !    6.8   0.0    0.0046       8.3      60      91 ..      79     110 ..      66     114 .. 0.82
   3 ?    0.5   0.0      0.44   7.8e+02      73      89 ..     199     215 ..     184     221 .. 0.75
   4 ?    3.4   0.0     0.054        96      51      82 ..     376     409 ..     369     426 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00079
                   EEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGGGS CS
  Thioredoxin_8  5 lLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefekylkkn 57
                   ++ f+a wc +c++  p   +  ++l      ++ +v++d   e++++++ ++
     KKY21736.1 49 IVEFYAPWCGHCQNLKPAYEKAAKNLA--GLAKVAAVNCDD--ESNKAFCGNM 97
                   788***********************8..888899999998..4677777666 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0046
                    TSEE.EE-TT-HHHHTT-S--TT-SEEEEE-T CS
  Thioredoxin_8  60 pwlsvpfddkkrnklkkkynvkaiPtlvvldk 91 
                    +  +v  dd+++++++ +++v+++Ptl ++++
     KKY21736.1  79 KVAAVNCDDESNKAFCGNMGVQGFPTLKIVRP 110
                    56688899*******************99986 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.44
                    HHTT-S--TT-SEEEEE CS
  Thioredoxin_8  73 klkkkynvkaiPtlvvl 89 
                    +  +k+ ++++Ptl++l
     KKY21736.1 199 AAVEKFSITSFPTLLLL 215
                    45688*********998 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.054
                    HHHGGGS..-TTSEE.EE-TT-HHHHTT-S--TT CS
  Thioredoxin_8  51 ekylkkn..kkpwlsvpfddkkrnklkkkynvka 82 
                    ek++k n   +p +svp +++ + +lkk +++++
     KKY21736.1 376 EKHHKRNahLFPIYSVPESNEASATLKKALDISG 409
                    677777765679******************9986 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.3e-06    0.0024      15      83 .]      43     110 ..      37     110 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.3e-06
                    HHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT---SSEEEEE-T CS
  Thioredoxin_7  15 ergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanileldeqgvPvvafldp 83 
                    +++ + +v f a wc++Cq l+ + +++ ++ a    k++ ++ d+++++a  +++  qg+P++ +++p
     KKY21736.1  43 KSNHTSIVEFYAPWCGHCQNLKPAYEKAAKNLA-GLAKVAAVNCDDESNKAFCGNMGVQGFPTLKIVRP 110
                    56667799********************99999.889***********999667777799**9999887 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   8.1e-06     0.015      24      75 ..      44      92 ..      29     109 .. 0.83
   2 ?   -1.1   0.0      0.96   1.7e+03      43      67 ..     366     390 ..     361     418 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8.1e-06
                TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHH CS
    AhpC-TSA 24 kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkk 75
                +++  ++ fy+  wc +C++  pa++k++++++ + ++v +v++d++   k+
  KKY21736.1 44 SNHTSIVEFYAP-WCGHCQNLKPAYEKAAKNLAGL-AKVAAVNCDDES-NKA 92
                4577899*****.********************55.89******9987.455 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.96
                 HHHHHHHHCHHHCCCTTEEEEEEES CS
    AhpC-TSA  43 telpalaklyeefkergvevigvsv 67 
                 t   +l++l+e+ ++r++ ++ + +
  KKY21736.1 366 TAYASLSELAEKHHKRNAHLFPIYS 390
                 5667889999999999998887755 PP

>> QSOX_Trx1  QSOX Trx-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.1e-05     0.038       8     104 ..     144     240 ..     137     243 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.1e-05
   QSOX_Trx1   8 epaksseideffkkkneeylAlifEen..esYiGrevildllqyenvavrRvlkaeeglveklgvtsvpslyllsrngsatrlkikketRsfysslLkk 104
                 + +k s++de++++ +++  A++f e+  +s + r    d+l  + ++     ++e   vek+ +ts+p l ll   ++ + + +   ++    ++Lk+
  KKY21736.1 144 KRVKDSDLDEWLAQGSDTAKAILFTEKgtTSALLRALAVDFL--SSISFAQIRNKETAAVEKFSITSFPTLLLLPGGDKEALVYQGEMKKDELVAFLKQ 240
                 567889*****************9775226788999999988..5799999999****************99887777666666666666666777765 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1    0.0013       2.4       8      53 ..      55     105 ..      48     120 .. 0.72
   2 ?    1.8   0.0      0.14   2.5e+02      32      75 ..     191     238 ..     172     239 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0013
                    SSSTTCHHHHHHHHHHCHCCTCECEEECC....TTHHHH.HHCT-SSSSEE CS
  Thioredoxin_3   8 pgCakCpklekavkeaaaekgikaevekv....tdfeei.ekygVmsvPal 53 
                    p C +C++l+ a ++aa+++   a+v  v    + ++ +  ++gV+  P+l
     KKY21736.1  55 PWCGHCQNLKPAYEKAAKNLAGLAKVAAVncddESNKAFcGNMGVQGFPTL 105
                    67******************6555443331122344445778888888877 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.14
                    EEECCTTHHHHHHCT-SSSSEEECT.....TCEEEESS---CCHHHHHH CS
  Thioredoxin_3  32 evekvtdfeeiekygVmsvPalvid.....gkvvvsGkvpseeeirkll 75 
                      ++ +++  +ek+ ++s P+l++      + +v++G  ++++e+ ++l
     KKY21736.1 191 AQIRNKETAAVEKFSITSFPTLLLLpggdkEALVYQG-EMKKDELVAFL 238
                    556668888899**********664466677889999.78888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1165  (0.0649785); expected 358.6 (0.02)
Passed bias filter:                      718  (0.0400469); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.52
# Mc/sec: 2705.65
//
Query:       KKY21737.1  [L=573]
Description: putative f-box domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-05   24.0   0.2    7.7e-05   22.5   0.2    1.9  1  F-box       F-box domain
    2.9e-05   23.9   0.7    6.5e-05   22.7   0.7    1.7  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.2   8.6e-09   7.7e-05       5      46 ..      67     108 ..      64     110 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 8.6e-09
                 HS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH CS
       F-box   5 rLPsevlrhILerLplsdllalrrVSkgwrilidsdrlwcks 46 
                 +LP ++l +   ++++ dl+++rrVS++w  +  ++ l +++
  KKY21737.1  67 CLPQDLLIQLAGYVDPWDLVRFRRVSRRWEAAFSDVYLIRRI 108
                 8****************************9999998887665 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.7   7.3e-09   6.5e-05       3      45 ..      67     108 ..      65     111 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 7.3e-09
  F-box-like   3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrl 45 
                  LP ++L+q   y++p dL+r ++V+rrW  + +d  +L rr+
  KKY21737.1  67 CLPQDLLIQLAGYVDPWDLVRFRRVSRRWEAAFSDV-YLIRRI 108
                 6*****************************999887.887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3844.74
//
Query:       KKY21738.1  [L=858]
Description: putative calpain-like protease ory [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-23   81.8   0.0    9.6e-21   74.1   0.0    2.4  2  Peptidase_C2  Calpain family cysteine protease
    7.2e-08   32.8   0.4    1.9e-06   28.2   0.0    3.2  3  Calpain_III   Calpain large subunit, domain III
  ------ inclusion threshold ------
       0.26   11.4   0.6       0.45   10.6   0.6    1.4  1  MIT           MIT (microtubule interacting and transport) dom


Domain annotation for each model (and alignments):
>> Peptidase_C2  Calpain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0014       8.6      23      69 ..     154     209 ..     136     215 .. 0.77
   2 !   74.1   0.0   1.6e-24   9.6e-21     102     295 ..     217     403 ..     210     404 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0014
  Peptidase_C2  23 kkveWkRpkeive.........npkfivdgasrtdikqGelgdCwllaaiasltlk 69 
                      +WkRp e ++         + + +++  ++ d+ q +  dC ++a++++ t +
    KKY21738.1 154 IFDDWKRPFEAFSnlsrdklgdEVRPTMEASTPLDLVQDATSDCSIVASLCVGTAR 209
                   3458******999899998886566678899******************9886665 PP

  == domain 2  score: 74.1 bits;  conditional E-value: 1.6e-24
  Peptidase_C2 102 vdvvvDDrlPt.vngklvf.vksaeknefWsalleKAyAklhgsyealkggstsealedftggvtesiel.elkeapkelfkilkkalergslmgcs 195
                    +vv+DD+lP+ +n ++++ + +++   +W al+eKAy k+ g y+   g ++   ++++ g + e++ l +++  pkel++ l +a+ +g ++ + 
    KKY21738.1 217 RKVVIDDLLPMsKNSRTLYvIDRNNPGLLWPALIEKAYLKVRGGYD-FPGSNSGTDIATLIGWIPEQVFLhDDDILPKELWRRLYSAFGHGDILLTL 312
                   68*********54566777567777889*****************8.77888888899999999999988545567899*********999988876 PP

  Peptidase_C2 196 ieassaeeleaklengLvkgHaYsvtaveevelkkekvkLirlrnPWG.eveWkGawsdkskeWeevseeekeklklkkkedgefwmsfedflknFt 291
                    +  + +e e+  ++gL  +H Y+v++++ev    ++ +++ ++nPW     WkG+  +  ++    ++++ e ++ +  + g+fwm++  ++++F+
    KKY21738.1 313 GT-GKLSEREQ-RHSGLAGEHDYAVIDIREVG---DTCEML-IKNPWSdGDVWKGKKGKANSQM---TDHDLEGVR-EPLTPGTFWMDLGSVFQHFE 399
                   65.33345555.489****************3...445554.78****6679***988877765...788888887.55599*************** PP

  Peptidase_C2 292 klei 295
                   ++ i
    KKY21738.1 400 NMYI 403
                   9876 PP

>> Calpain_III  Calpain large subunit, domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.99   5.9e+03      18      27 ..     431     440 ..     428     445 .. 0.80
   2 ?   -0.7   0.0      0.26   1.5e+03     117     140 ..     515     538 ..     494     539 .. 0.82
   3 !   28.2   0.0   3.1e-10   1.9e-06       2     137 ..     557     671 ..     556     674 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.99
  Calpain_III  18 tfwkNPqfrl 27 
                   f +NPqf++
   KKY21738.1 431 YFGSNPQFEV 440
                  5889****97 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.26
  Calpain_III 117 vivPstfepneegeFlLrvFsekk 140
                  v++ s + + e+ +F+L  Fs++k
   KKY21738.1 515 VVIASQSLQSEKHNFTLSAFSRSK 538
                  778888999999999999999876 PP

  == domain 3  score: 28.2 bits;  conditional E-value: 3.1e-10
  Calpain_III   2 eWvkgstAGGcrnkketfwkNPqfrleleeeededeeekkctvlvslmqknrrkerkkgeelltigfavykv..eeeeenrklrkeffaknqevarss 97 
                  +W    +AGG+  ++  + +NPqf+++l+          k +v + +           +++ +++   ++ +  + + ++r++     + ++ +a++ 
   KKY21738.1 557 SW-TSLNAGGNS-DSPFYTTNPQFSFSLPI---------KASVAILIST---------SSPDIAVHARLFFIstSPSAPSRRIATA--RPRDVLAQTG 632
                  57.5789***76.689999*********88.........3555555544.........1233455445555411333344444443..4556678888 PP

  Calpain_III  98 tfinsrevvkrfklppGeYvivPstfepneegeFlLrvFs 137
                  ++ +s  +++ ++l++G Y i+ stfe+n++++F L v s
   KKY21738.1 633 DYRRSCAITE-TTLDAGLYTIICSTFEANQHAQFKLSVSS 671
                  8998888887.9***********************99865 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.6   7.6e-05      0.45      17      64 ..      23      71 ..      12      72 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.6e-05
         MIT 17 agnyeeAlelYkealelLlqalk.ekneerrellrekieeYleRaeeLk 64
                a+  +eAle+  +  e  ++alk  ++++ + ++ +k++e+++ ae++k
  KKY21738.1 23 AKSHAEALEAAITTAESYMLALKiSTDATEKSKIDAKCKEWIDIAEKIK 71
                6777788888888888899****66999*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (858 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.48
# Mc/sec: 5337.58
//
Query:       KKY21739.1  [L=350]
Description: putative peroxisomal adenine nucleotide transporter 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-54  180.6   0.2    2.8e-18   65.6   0.0    3.1  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   1.5e-22   2.8e-18       3      95 ..       9     109 ..       7     111 .. 0.89
   2 !   52.1   0.1   2.6e-18   4.6e-14       4      94 ..     118     204 ..     115     207 .. 0.92
   3 !   59.5   0.0   1.3e-20   2.2e-16       3      90 ..     210     298 ..     209     303 .. 0.90

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 1.5e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS..........HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa..........ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkr 91 
                 l+++ + +aG++++++a  +++Pld+vKt+lq+q k+  +    a          ++d+++ki+ +eGl+gly G+  +ll+va++++++f  y ++++
  KKY21739.1   9 LPPWGSAVAGATGAVIANALVYPLDIVKTKLQVQVKRRPEDP--AfdpdhvhydsTVDAIQKILADEGLAGLYNGMHGALLGVASTNFAYFYWYSVVRT 105
                 68999****************************998854422..12358888888*******************************************9 PP

                 HHCT CS
   Mito_carr  92 lllk 95 
                 l++ 
  KKY21739.1 106 LYMA 109
                 9975 PP

  == domain 2  score: 52.1 bits;  conditional E-value: 2.6e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHH.HHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiyk.eeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ++++el  G++agava+++t P+ v+ tr qtq+k +kk     +l + k+++  e+G++gl+rGl ++l+ v+ + a++ ++y+ l++l++
  KKY21739.1 118 GTAAELSLGAVAGAVAQVFTIPVSVITTRQQTQAKGEKKG----LLATGKEVVDsEDGVSGLWRGLKASLVLVV-NPAITYGAYQRLRTLFF 204
                 57899*******************************9873....999******7588***************99.*************9986 PP

  == domain 3  score: 59.5 bits;  conditional E-value: 1.3e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS.HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa.ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlk 90 
                 l++++ ++ G++++a+at++t+Pl v+K+ lq+++  s+k +  + +++vl+ i+++eG ++l++G++p++++    ++l +++ e l 
  KKY21739.1 210 LRPWEAFFLGAMSKALATIFTQPLIVAKVCLQSHPPPSRKGRPFKsFVEVLRYIIEHEGPLALFKGIGPQIFKGLLVQGLLMMTKERLE 298
                 57899*****************************999866443335*************************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2327.32
//
Query:       KKY21740.1  [L=496]
Description: hypothetical protein UCRPC4_g03507 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0079   16.1   0.0      0.027   14.4   0.0    1.9  2  LisH         LisH
      0.008   17.0   0.2        8.6    7.4   0.0    4.1  4  WD40         WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.092   12.7   0.3        0.7    9.9   0.1    2.5  2  PQQ          PQQ enzyme repeat
       0.11   12.8   0.0       0.53   10.6   0.0    2.1  2  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   6.1e-06     0.027       6      27 .]      10      31 ..       9      31 .. 0.95
   2 ?   -2.2   0.0         1   4.7e+03      11      20 ..     365     374 ..     365     377 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.1e-06
                HHHHHHHHCT-HHHHHHHHHHT CS
        LisH  6 LIydYLvkeGyeetAeaFekEa 27
                ++ +YL  + y et +aF++E+
  KKY21740.1 10 IVARYLKSNSYIETLSAFLQET 31
                799******************7 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1
                 HHHCT-HHHH CS
        LisH  11 LvkeGyeetA 20 
                 L+ +++e++A
  KKY21740.1 365 LQVSNLESAA 374
                 8999****99 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.7   7.7e+03      13      23 ..     117     127 ..     101     134 .. 0.81
   2 ?    4.0   0.0     0.023     1e+02      15      37 ..     196     212 ..     178     213 .. 0.78
   3 ?   -1.1   0.0      0.97   4.3e+03      20      35 ..     399     412 ..     378     412 .. 0.76
   4 !    7.4   0.0    0.0019       8.6       8      37 ..     436     475 ..     428     476 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.7
                 EEEEEEETTSS CS
        WD40  13 vtslafspdga 23 
                 + ++ f+pdg+
  KKY21740.1 117 IQAITFQPDGT 127
                 77788999986 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.023
                 EEEEETTSSEEEEEETTSEEEEE CS
        WD40  15 slafspdgawlasGsdDgtvriW 37 
                 +l      +++a++++D++v+i+
  KKY21740.1 196 GL------RYVATAGWDQKVYIY 212
                 56......78**********997 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.97
                 TTSSEEEEEETTSEEE CS
        WD40  20 pdgawlasGsdDgtvr 35 
                  +g w + G+ Dg vr
  KKY21740.1 399 GSGVW-VNGD-DGVVR 412
                 45556.4777.99997 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0019
                 ESS..SS.EEEEEEETTSSE..............EEEEETTSEEEEE CS
        WD40   8 tGH..ss.vtslafspdgaw..............lasGsdDgtvriW 37 
                 tGH  +s v+s+       w              ++sG+ D+ v iW
  KKY21740.1 436 TGHevGSkVRSI-------WagrigdneeeeeevVVSGGFDKRVFIW 475
                 688763368888.......777777778888887889*99******* PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       0.4   1.8e+03      23      36 ..     131     144 ..     131     146 .. 0.87
   2 ?    9.9   0.1   0.00016       0.7       7      23 ..     406     422 ..     401     422 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.4
                 EEEEESSSCGSSES CS
         PQQ  23 lWrfktggpvlslp 36 
                 +W++ +++p+ls  
  KKY21740.1 131 IWKVTLSSPILSIE 144
                 7*********9976 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00016
                 ETTSEEEEEETTTCCEE CS
         PQQ   7 sadGylyAlDadTGkvl 23 
                  +dG+++ +D++TGkv+
  KKY21740.1 406 GDDGVVRGIDVKTGKVR 422
                 68*************85 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.1   4.9e+03      35      51 ..     111     127 ..      99     130 .. 0.77
   2 ?   10.6   0.0   0.00012      0.53      43      76 ..     392     425 ..     361     440 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.1
  ANAPC4_WD40  35 dkedsevrsLaWkpdgk 51 
                  +  d++++++ ++pdg+
   KKY21740.1 111 SLADRSIQAITFQPDGT 127
                  45688999999999995 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00012
  ANAPC4_WD40  43 sLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  + aW+p+g+   v  +dg vr +d+++gkv   l
   KKY21740.1 392 QCAWRPNGSGVWVNGDDGVVRGIDVKTGKVRMML 425
                  679**************************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3266.98
//
Query:       KKY21741.1  [L=742]
Description: putative patatin-like serine [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-49  164.6   1.2    1.6e-48  163.9   1.2    1.3  1  DUF3336   Domain of unknown function (DUF3336)
    1.1e-16   61.7   0.1    9.1e-16   58.6   0.1    2.5  1  Patatin   Patatin-like phospholipase


Domain annotation for each model (and alignments):
>> DUF3336  Domain of unknown function (DUF3336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.9   1.2   1.8e-52   1.6e-48       1     137 [.     121     273 ..     121     274 .. 0.93

  Alignments for each domain:
  == domain 1  score: 163.9 bits;  conditional E-value: 1.8e-52
     DUF3336   1 lvawrgkrkklrkklrkattYeeWkeaAkeLDellgndeWkendes.yYdyklvkkvlkkLrklrek...............edlkellellrtclkrN 83 
                 +v+w+g+r+klrk+l+ +++Y+eW eaA+eLD++lgn++Wk++ e+ yYdyk+v+kv+ +L +lr+k                 + el +ll++c+k+N
  KKY21741.1 121 FVTWTGRREKLRKRLQYSRSYDEWSEAANELDNYLGNEDWKQEAEYaYYDYKTVRKVTAQLGELRAKvqqeesnrsngigglRPIDELKSLLENCVKNN 219
                 689**************************************************************9977776666666666644888888********* PP

     DUF3336  84 fagienprLYsetyiGTKklieeYidevekalellaetkqlsaeekleffketr 137
                 f+g+enprLYsetyiGTK l + ++de++++l+++++++ ++++ek++ffk+++
  KKY21741.1 220 FVGVENPRLYSETYIGTKFLAQGFVDEAQRCLQTVLNSPLITENEKKNFFKHLD 273
                 ***************************************************986 PP

>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.1     1e-19   9.1e-16       1     201 [.     281     469 ..     281     472 .. 0.77

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 1e-19
     Patatin   1 LvlsGGGsrgafslgalkaLkkelgerfdiisGtSaGAiialllalgrdpaalvddlrnlllnkifdrdllirelaanlaarlsgllgkgglfdaealr 99 
                 L+lsGG + +++++g++kaL  e g  ++ii+GtS+GA++a+l+++  ++++l++ l+ +l+++i               +  ++++ +g+ fd   ++
  KKY21741.1 281 LCLSGGATFAYYHFGVIKAL-LETGNLPEIITGTSGGALVAALVGTR-TDDELKQLLVPALAYRIQACA-------EPMSVWIKRWWKTGARFDSVTWA 370
                 9******************9.9*******************777776.444445555555555555555.......77888888888888888888888 PP

     Patatin 100 ellr.kvladktlkrlsarlgklpllkslftanqavpaittataatastanranglytedddddvdladavraSsafPglf..............ppvs 183
                 +  +    +++t++++ +r g++                  ++    s+   +++l+++ + +d  ++ av+aS+a+Pg++               p+s
  KKY21741.1 371 KHCSwFCRGSMTFREAYERTGRI-----------------LNVSCIPSDPHSPTILANYLTSPDCVIWTAVLASAAVPGILnpivlmrktrdgtlAPYS 452
                 88885225899999999999999.................67777788888889999999999******************544444444444444444 PP

     Patatin 184 ldgelyvDGGilsNvPil 201
                 ++  ++ DG+++  +P++
  KKY21741.1 453 FGH-KWKDGSLRTDIPLK 469
                 433.56899999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.53
# Mc/sec: 4210.57
//
Query:       KKY21742.1  [L=799]
Description: putative leucine rich repeat domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-16   57.7   6.1    1.8e-05   25.0   0.0    4.0  4  LRR_4     Leucine Rich repeats (2 copies)
    1.4e-14   53.6   6.4    4.4e-07   29.6   1.7    3.9  5  LRR_8     Leucine rich repeat
    2.1e-06   27.5   7.7        3.1    8.7   0.3    6.2  6  LRR_1     Leucine Rich Repeat
    0.00016   21.5   8.7       0.12   12.5   0.2    4.9  5  LRR_6     Leucine Rich repeat
    0.00029   20.4   0.2    0.00093   18.7   0.2    1.8  1  LRR_9     Leucine-rich repeat


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.3   4.4e-05      0.16       3      39 ..     410     448 ..     409     454 .. 0.79
   2 !   22.5   1.3     3e-08   0.00011       3      39 ..     435     471 ..     433     479 .. 0.88
   3 !   20.6   0.3   1.2e-07   0.00042       1      42 [.     456     498 ..     456     501 .. 0.87
   4 !   25.0   0.0   5.2e-09   1.8e-05       2      35 ..     503     538 ..     502     545 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.4e-05
                 --EEE--SS---E-S-....HHH-TT--EEE-.-S-----G CS
       LRR_4   3 LevLdLsnNqltdipl....leklpnLkeLdLsgNnlitdl 39 
                 L++L++++N lt+i      +     L++LdLs+N l   +
  KKY21742.1 410 LKYLSFADNSLTSITAdsllPV-SATLRSLDLSSN-LFAEI 448
                 89**************764333.566******999.65555 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 3e-08
                 --EEE--SS---E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4   3 LevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdl 39 
                 L++LdLs+N   +ip  l+ l+ L++LdLs++  i++l
  KKY21742.1 435 LRSLDLSSNLFAEIPEsLACLTALRSLDLSNC-MIESL 471
                 9***************8888*********887.88877 PP

  == domain 3  score: 20.6 bits;  conditional E-value: 1.2e-07
                 SS--EEE--SS---E-S-HH.H.-TT--EEE-.-S-----GGGG CS
       LRR_4   1 pnLevLdLsnNqltdiplle.k.lpnLkeLdLsgNnlitdldeL 42 
                 + L++LdLsn+++ ++ +l+ + lp  ++L L + n++++l ++
  KKY21742.1 456 TALRSLDLSNCMIESLHSLSrSpLPAVTVLKL-RSNRLRSLAGI 498
                 57*************99977788*********.66699999765 PP

  == domain 4  score: 25.0 bits;  conditional E-value: 5.2e-09
                 S--EEE--SS---E-S-...HHH-TT--EEE-.-S-- CS
       LRR_4   2 nLevLdLsnNqltdipl...leklpnLkeLdLsgNnl 35 
                 +Le LdLs+N++td +    l +lpnL+e+++ +N +
  KKY21742.1 503 SLERLDLSDNKITDPEEaarLTGLPNLREIWVKHN-P 538
                 69************666777669*********888.3 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.2   4.4e+03      16      31 ..     222     237 ..     220     238 .. 0.78
   2 !    4.8   0.0    0.0064        23      24      45 ..     407     428 ..     393     433 .. 0.81
   3 !   29.6   1.7   1.2e-10   4.4e-07       3      61 .]     410     468 ..     408     468 .. 0.94
   4 !   17.8   1.0   5.8e-07    0.0021      24      61 .]     479     514 ..     469     514 .. 0.91
   5 !   23.5   0.2   9.9e-09   3.5e-05       2      60 ..     481     538 ..     480     539 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.2
                 E-TTSSTT-TT--EEE CS
       LRR_8  16 lddeaFkglsnLkvLd 31 
                 ++  aFk++s+L+v d
  KKY21742.1 222 VPLYAFKNVSALEVVD 237
                 66679******99865 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0064
                 -TT--EEE--SS---GGGGGGG CS
       LRR_8  24 lsnLkvLdLsnNllttlspgaf 45 
                 ++ Lk+L+  +N+lt++ ++++
  KKY21742.1 407 WRFLKYLSFADNSLTSITADSL 428
                 5569*************98876 PP

  == domain 3  score: 29.6 bits;  conditional E-value: 1.2e-10
                 -SEEE-TTS--SEE-TTSSTT.-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   3 LtsLdLsnNrltslddeaFkg.lsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 L++L+  +N+lts+  ++       L++LdLs+Nl   + p+++++L++LrsLdLs++ +
  KKY21742.1 410 LKYLSFADNSLTSITADSLLPvSATLRSLDLSSNLFAEI-PESLACLTALRSLDLSNCMI 468
                 8899999***********9997889**************.9***************9865 PP

  == domain 4  score: 17.8 bits;  conditional E-value: 5.8e-07
                 -TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8  24 lsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 l++++vL+L++N+l++l    ++ L sL+ LdLs+N++
  KKY21742.1 479 LPAVTVLKLRSNRLRSLA--GIERLLSLERLDLSDNKI 514
                 8999*************5..****************97 PP

  == domain 5  score: 23.5 bits;  conditional E-value: 9.9e-09
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---G.GGGGGGTT--S-.EEE--SS- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNlltt.lspgafsgLpsLrsLdLsgNr 60 
                  +t+L L++Nrl sl     ++l +L+ LdLs+N++t   ++  + gLp+Lr++ + +N+
  KKY21742.1 481 AVTVLKLRSNRLRSLAG--IERLLSLERLDLSDNKITDpEEAARLTGLPNLREIWVKHNP 538
                 6899***********87..689****************556667**********999997 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.063   2.3e+02       2      20 ..     410     428 ..     409     431 .. 0.91
   2 !    5.6   0.1    0.0091        33       2      19 ..     435     451 ..     434     455 .. 0.76
   3 !    8.7   0.3   0.00087       3.1       2      17 ..     458     473 ..     457     479 .. 0.85
   4 ?   -3.4   0.0         5   1.8e+04       4      12 ..     484     492 ..     483     496 .. 0.72
   5 !    5.8   0.0    0.0077        28       1      14 [.     503     516 ..     503     527 .. 0.84
   6 ?    3.1   0.0     0.061   2.2e+02       1      18 [.     528     545 ..     528     550 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.063
       LRR_1   2 LrhLdLsnnpllglppnsf 20 
                 L++L   +n+l++++++s+
  KKY21742.1 410 LKYLSFADNSLTSITADSL 428
                 9************999997 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0091
       LRR_1   2 LrhLdLsnnpllglppns 19 
                 Lr+LdLs+n +   +p+s
  KKY21742.1 435 LRSLDLSSNLF-AEIPES 451
                 9********98.455555 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00087
       LRR_1   2 LrhLdLsnnpllglpp 17 
                 Lr+LdLsn+ +++l++
  KKY21742.1 458 LRSLDLSNCMIESLHS 473
                 9*********977776 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 5
       LRR_1   4 hLdLsnnpl 12 
                 +L L++n+l
  KKY21742.1 484 VLKLRSNRL 492
                 688899987 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.0077
       LRR_1   1 nLrhLdLsnnpllg 14 
                 +L++LdLs+n +++
  KKY21742.1 503 SLERLDLSDNKITD 516
                 69********9854 PP

  == domain 6  score: 3.1 bits;  conditional E-value: 0.061
       LRR_1   1 nLrhLdLsnnpllglppn 18 
                 nLr++ + +np+++ ++n
  KKY21742.1 528 NLREIWVKHNPFTRTHSN 545
                 8***********999887 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.28     1e+03       4      16 ..     409     421 ..     408     422 .. 0.87
   2 !    7.4   0.1    0.0014         5       3      13 ..     433     443 ..     431     446 .. 0.86
   3 ?    2.3   0.1      0.06   2.2e+02       5      13 ..     458     466 ..     455     470 .. 0.86
   4 ?   -2.0   0.0       1.5   5.5e+03       6      15 ..     483     492 ..     482     494 .. 0.84
   5 !   12.5   0.2   3.4e-05      0.12       4      17 ..     503     516 ..     501     517 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.28
       LRR_6   4 hLteLdLsgNdIg 16 
                  L++L+ ++N ++
  KKY21742.1 409 FLKYLSFADNSLT 421
                 69********887 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0014
       LRR_6   3 thLteLdLsgN 13 
                  +L++LdLs+N
  KKY21742.1 433 ATLRSLDLSSN 443
                 69********* PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.06
       LRR_6   5 LteLdLsgN 13 
                 L++LdLs +
  KKY21742.1 458 LRSLDLSNC 466
                 9******99 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 1.5
       LRR_6   6 teLdLsgNdI 15 
                 t L L++N +
  KKY21742.1 483 TVLKLRSNRL 492
                 899*****87 PP

  == domain 5  score: 12.5 bits;  conditional E-value: 3.4e-05
       LRR_6   4 hLteLdLsgNdIgD 17 
                 +L+ LdLs+N+I+D
  KKY21742.1 503 SLERLDLSDNKITD 516
                 79***********9 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.2   2.6e-07   0.00093      22     138 ..     436     553 ..     421     558 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.6e-07
       LRR_9  22 reldlrgykipvienlGatldqfdtidlsdndirkldgfPl..lkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklell 118
                 r ldl ++ ++ i +  a l  + ++dls+  i  l ++    l  + +l l +nr++ +a g+e+   +le l l++n++++  +   l+ l++l+ +
  KKY21742.1 436 RSLDLSSNLFAEIPESLACLTALRSLDLSNCMIESLHSLSRspLPAVTVLKLRSNRLRSLA-GIERL-LSLERLDLSDNKITDPEEAARLTGLPNLREI 532
                 7899999999999999999**************9999986433899**********98776.77765.58***************************** PP

       LRR_9 119 sllknpvtn.kkeyrlyviyk 138
                  + +np t+ +++yr  v + 
  KKY21742.1 533 WVKHNPFTRtHSNYRVTVFNL 553
                 ******996267999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (799 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.35s 00:00:01.16 Elapsed: 00:00:00.56
# Mc/sec: 4321.59
//
Query:       KKY21743.1  [L=325]
Description: putative serine threonine-protein phosphatase pp1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-40  138.5   0.1    5.3e-40  138.1   0.1    1.2  1  Metallophos  Calcineurin-like phosphoesterase
    7.1e-23   80.8   1.3    1.1e-22   80.2   0.7    1.7  2  STPPase_N    Serine-threonine protein phosphatase N-terminal 


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.1   0.1   5.9e-44   5.3e-40       2     201 ..      58     249 ..      57     252 .. 0.94

  Alignments for each domain:
  == domain 1  score: 138.1 bits;  conditional E-value: 5.9e-44
                  EEEEEESBTBTTCCTHHHHHHHHHHHH..HHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddl..lreekpdlvllaGDlvdrgdlekellel.laalvkypipvylllGNHe........gfeeellnkygyl 88 
                  +i ++gD+H     gq++dll+l++    ++e  ++l+l  GD+vdrg  + e++ l la+++kyp ++++l+GNHe        gf++e++++y   
   KKY21743.1  58 PIKICGDIH-----GQYYDLLRLFEYGgfPPE-ANYLFL--GDYVDRGKQSLETICLlLAYKIKYPENFFILRGNHEcasinriyGFYDECKRRYN-- 145
                  6889*****.....**********77753555.99****..*******77777777779***********************************99.. PP

                  HHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHH CS
  Metallophos  89 gifsepwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsplyrgsgylfgde 182
                      ++w++++++fn+lp+a++++   k++++hGg sp+l +s ++++++ +++++p+ g   d++++d       + + + g+s + rg + +fg++
   KKY21743.1 146 ---IKLWKTFTDCFNCLPIAAIIDE--KIFTMHGGlSPDL-NSMEQIRRVMRPTDIPDCGllcDLLWSD-------PDKDITGWSENDRGVSFTFGPD 230
                  ...99********************..********77777.****************************.......********************** PP

                  HHHHHHHHTTESEEEEESS CS
  Metallophos 183 aledllkkygvdlvisGHt 201
                  ++ ++l+k++ dl++++H+
   KKY21743.1 231 VVSRFLQKHDMDLICRAHQ 249
                  ******************8 PP

>> STPPase_N  Serine-threonine protein phosphatase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.7   1.2e-26   1.1e-22       1      48 []       9      56 ..       9      56 .. 0.97
   2 ?   -3.5   0.0       1.7   1.6e+04      22      32 ..     236     246 ..     235     247 .. 0.82

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 1.2e-26
   STPPase_N  1 vDdiIerLlevrgkpggkkvqLseaEIrqlCakareiFLsQPtLLeLe 48
                +D++I+rLlevrg+++gk+vqL eaEIr+lC+kareiF+sQP+LLeLe
  KKY21743.1  9 LDSVIDRLLEVRGSRPGKQVQLLEAEIRYLCTKAREIFISQPILLELE 56
                7************8888******************************7 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.7
   STPPase_N  22 LseaEIrqlCa 32 
                 L+ +++ ++C+
  KKY21743.1 236 LQKHDMDLICR 246
                 77899999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2315.70
//
Query:       KKY21909.1  [L=414]
Description: putative tubulin gamma chain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-48  165.8   0.0    2.2e-48  165.1   0.0    1.3  1  Tubulin    Tubulin/FtsZ family, GTPase domain
    2.2e-42  144.2   0.2    5.3e-42  143.0   0.0    1.6  2  Tubulin_C  Tubulin C-terminal domain
  ------ inclusion threshold ------
       0.13   11.4   0.0       0.16   11.1   0.0    1.2  1  Tubulin_2  Tubulin like


Domain annotation for each model (and alignments):
>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.1   0.0   3.7e-52   2.2e-48      42     196 ..      12     171 ..       6     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 165.1 bits;  conditional E-value: 3.7e-52
                 TTEEEEE....EEESBHHHHHTS-GS........EEEE--CCC..CTTC--TT-HHHHHHHHHHTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHH CS
     Tubulin  42 sgkveyiprsvaidtdpqvlneikags..elfnpnklllgkeg..agnngaggypevgkeaaeeileeirkevekcdslqgffitaslgGGTGSGlgpv 136
                 s++ +yipr+++id++p+v+n+i++g+  +++np+++++g++g  agnn+a gy   g++++ee+ ++i++e++++dsl+gf++++s++GGTGSGlg++
  KKY21909.1  12 SDDTRYIPRAILIDLEPRVINSIQTGPykNIYNPENFFIGQSGmgAGNNWAAGYAA-GESVQEEVFDMIDREADGSDSLEGFMLLHSIAGGTGSGLGSF 109
                 57799**************************************99**********9.****************************************** PP

                 HHHHHHHTSTTSEEEEEEEE--..GG.G-HHHHHHHHHHHHHHHHT-SEEEEEEHHHHHCCS CS
     Tubulin 137 ilevlkeeypkalvvtvvvlPs..efsevvvepynailalkelieesdavividNdaLlkil 196
                 ile++++++pk++v+t++v+P   +  +vv+ pyn++lal++l +++d+v+v+dN aL +i+
  KKY21909.1 110 ILERMNDRFPKKIVQTYSVFPDtfGGGDVVTNPYNSLLALRRLTQCADSVVVLDNGALSRIA 171
                 **********************88667*******************************9996 PP

>> Tubulin_C  Tubulin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       0.8   4.8e+03      33      46 ..     181     194 ..     175     201 .. 0.64
   2 !  143.0   0.0   8.9e-46   5.3e-42       1     124 [.     221     349 ..     221     350 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.8
                 TCSGGGBSSSTSTT CS
   Tubulin_C  33 llepknimvkvdpr 46 
                  ++++n++v++ ++
  KKY21909.1 181 TFQQTNQLVSTVMS 194
                 46777777766554 PP

  == domain 2  score: 143.0 bits;  conditional E-value: 8.9e-46
                 TTC-EEEEEEESSSCTT...TTTCS-HHHHHHHHHTCSGGGBSSSTSTTT.SSEEEEEEEEEE.SSSHHHHHHHHHHHHHTTTS-BSTTSTTTEEEEEE CS
   Tubulin_C   1 PrlhFlltsyaPlvsae...kaavektsvqdvtrallepknimvkvdprk.gkylaiallirG.dvepkevnkavqrikekkkaqfveWiptgikvaln 94 
                 Pr+hFl+tsy+P++ ++   +++v+kt+v dv+r+ll+pkn mv+v p+k ++y++i+++i+G   +p++v+k++ ri+e++ a+f++W+p++i+val+
  KKY21909.1 221 PRCHFLMTSYTPFTGDDvsqAKTVRKTTVLDVMRRLLQPKNRMVSVAPSKsSCYISILNIIQGnSLDPTDVHKSLLRIRERRLATFIPWGPASIQVALT 319
                 9*************9988878999**********************998879***********559********************************* PP

                 ECECT-TTTSSCEEEEEEEEGGGHHHHHHH CS
   Tubulin_C  95 kkspyvkkqskvsvlmlaNttsiaelfkrl 124
                 kkspy+ ++ +vs+lmlaN+tsia lf+r+
  KKY21909.1 320 KKSPYIPHTTRVSGLMLANHTSIAGLFRRI 349
                 ***************************997 PP

>> Tubulin_2  Tubulin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.7e-05      0.16     134     221 ..      70     146 ..      56     254 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.7e-05
   Tubulin_2 134 eirealrdaikrlrgsageeeglnvfVvgSLaGGTGSGiflDvayllrkilkeekqkvkiiglvllPdvfplnkeggervkaNayaaL 221
                 +++e++ d i+r +++  ++++  ++++ S+aGGTGSG+   ++   ++ ++++        + + Pd f      g  v +N y +L
  KKY21909.1  70 SVQEEVFDMIDREADG--SDSLEGFMLLHSIAGGTGSGLGSFILERMNDRFPKKIV----QTYSVFPDTFG-----GGDVVTNPYNSL 146
                 5666666666666662..35556688999*********877666666666666553....45566666643.....334555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3359.08
//
Query:       KKY21910.1  [L=333]
Description: putative glycerophosphoryl diester phosphodiesterase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-29  103.6   0.0    2.2e-29  103.0   0.0    1.3  1  GDPD      Glycerophosphoryl diester phosphodiesterase family
    5.6e-06   26.6   0.3    0.00046   20.6   0.3    2.7  2  GDPD_2    Glycerophosphoryl diester phosphodiesterase family


Domain annotation for each model (and alignments):
>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.0   2.5e-33   2.2e-29       5     258 ..      40     265 ..      37     266 .. 0.81

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 2.5e-33
                 TTTSSTTSHHHHHHHHHTT-SEEEEEEEE-TTS-EEE-SSSBSTTTCSCCCH.BGGGS-HHHHHTSTECCTTCCCCSCCCSSGCCB...BHHHHHHH.. CS
        GDPD   5 sgnlpEnTlesfakAaelGadyiEfDvqlTkDgvpVvlHDfnldrttdvagrldvkdltleelkrldkiakenkaqlsenrvrlefpfptleevlkk.. 101
                 ++ +pEn+++++++A+ +Ga  iE+D++l++Dgv+V+ HD++l r+++ ++  +v d +++ l +l+   +++   ++++++       +le++l+   
  KKY21910.1  40 PKPFPENSMAAMRSAVGAGAIGIETDIHLSRDGVVVLSHDKDLGRCFGIDK--KVIDCDWDYLSTLR---STR---APGEPL------ARLEDLLEYla 124
                 56789**********************************************..**************...554...688888......55555555521 PP

                 ...HHHCCSEEEEEEECCCCCCCHHHHHHTCHHHCCCCCSCHHTT..STTCSCEEEESTHHHHHHHHHTCTCTEEEEEEHHHHHHC-E.EECHCCCCCC CS
        GDPD 102 ...pqnvglnieikipmlseakeeeelqivkeilksvdeilkkvlkkadkrkvifssfnpdilkllrekqpklpllflteggteaeadssleraakfak 197
                      +v+l ++ik++ ++ + ++     +k i++++   +       + +++++ ++ ++++ l+ + +p  p++++  +  +a++          + 
  KKY21910.1 125 qpdLDHVWLLLDIKTDNEPDTVMRLV---AKTINTVTPSQR------PWSDRIVLGCWTAQFVPLCAQHLPGFPITHIGASICYARQF-------LDVP 207
                 15555555555555555544443333...455554444444......799*************************9999877666665.......6678 PP

                 CTCCCCHHCCCHCCCEB.CHHHHHHHTT-EEEEBSB-THSHHHHHHHHCCC-SEEEES-HH CS
        GDPD 198 adallgevsavaeglgdpdlVkraksrglvvhvytvnnedeeemkrlleagvdgvitDfpd 258
                 ++a+    +a+   +g +++ +++k  +  ++ +tvn++  + mk++++ gv+gvitD+p 
  KKY21910.1 208 NCAFNMFYKACYGPFG-RRFMNKVKNLNRDLFLWTVNDP--NIMKWAIQQGVQGVITDNPK 265
                 8888888888888877.78********************..******************96 PP

>> GDPD_2  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.017   1.5e+02      11      27 ..      49      65 ..      44      65 .. 0.88
   2 !   20.6   0.3   5.1e-08   0.00046       3      29 ..     238     264 ..     237     265 .. 0.95

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.017
      GDPD_2 11 avwrelvgaGVdgInTD 27
                a++r +vgaG+ gI TD
  KKY21910.1 49 AAMRSAVGAGAIGIETD 65
                799********999988 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 5.1e-08
      GDPD_2   3 rfWttddeavwrelvgaGVdgInTDdl 29 
                  +Wt++d++ ++ +++ GV+g++TD++
  KKY21910.1 238 FLWTVNDPNIMKWAIQQGVQGVITDNP 264
                 58************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2166.58
//
Query:       KKY21911.1  [L=361]
Description: putative d-isomer specific 2-hydroxyacid dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-46  157.2   0.2    4.2e-46  156.5   0.2    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
      3e-08   33.4   0.0    4.4e-08   32.9   0.0    1.2  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
     0.0019   18.4   0.0     0.0032   17.6   0.0    1.4  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5   0.2     7e-50   4.2e-46       2     178 .]     126     309 ..     125     309 .. 0.93

  Alignments for each domain:
  == domain 1  score: 156.5 bits;  conditional E-value: 7e-50
                   HHHHHHHTTHHHHHHHHHTTCC......HTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHH.HTT-EEEEESSSHHHHHCHHHHTCEEC.SHHHHHH CS
  2-Hacid_dh_C   2 alllallrrlaeadeevregew......ksekallgkelsgktvGiiGlGrIGqavakrlk.afgmkviaydrskkkeeeeeelgvelv.sleella 90 
                    ++l++ r++++a+ + r+ +       ++  a+ +++ +g t+GiiGlG+I +++a ++  a+gmk+ +yd+ +++ e e++l+++++ +l  ll+
    KKY21911.1 126 YMILSVFRNFTKAQVAARTADPaiftatHKLIATISHNPRGHTLGIIGLGNISKKLAFKAGvALGMKIHYYDVIRQPPEVEQSLNATYHpNLTSLLQ 222
                   6899********9999999977777765556688899********************99999**************99988889998877******* PP

                   H-SEEEE-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  91 esDivslhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                    sD++s+h+pl+ +t+hl+n++++++mk+g+ l+NtaRG++v+e aL+ aL+sg++++aalDv+++ep  +   l+ ++nv++t Hi+
    KKY21911.1 223 VSDCISIHVPLNTHTHHLLNSTTISQMKSGSRLVNTARGEVVEETALIFALQSGHLSAAALDVHYHEPQVSP-ILAGMENVTVTTHIG 309
                   *********************************************************************955.7899*********98 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   7.4e-12   4.4e-08      50     126 ..      71     333 ..      54     343 .. 0.89

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 7.4e-12
                 -BSHHHHHHH.TT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH............................................. CS
                 xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
  2-Hacid_dh  50 kvtaevleal.pkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt............................................. 102
                 + ++e+++ l p++++ a ag+G++  D+d++ +rGi+ +n  g+s e+v +++                                             
  KKY21911.1  71 QWDDELISLLpPSVQIFASAGAGFNWADVDTLGKRGIWYANGAGASDEAVSDTAlymilsvfrnftkaqvaartadpaiftathkliatishnprghtl 169
                 56899****************************************************************999999999999999999999999999999 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  KKY21911.1 170 giiglgniskklafkagvalgmkihyydvirqppeveqslnatyhpnltsllqvsdcisihvplnththhllnsttisqmksgsrlvntargevveeta 268
                 999999999999999999999999999999999999999999999999999999999999999999999999999999999999888888888888888 PP

                 .........................................T-BHHHHHHHHHHHHHHHHHHHTT CS
                 .........................................xxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 .........................................aaTeeaqeniaeeaaenlvaflkg 126
                                                          +   +++ n   +a++n+++++ +
  KKY21911.1 269 lifalqsghlsaaaldvhyhepqvspilagmenvtvtthigGGALDTRINFESTAMKNILEVVGE 333
                 88888888888888888888888888888888888888888777788888888888888777655 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   5.4e-07    0.0032       2      90 ..     169     259 ..     168     284 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 5.4e-07
                    EEEE--SHHHHHHHHHH.HHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S CS
  NAD_binding_2   2 igfiGlGvMGsnmalnl.lkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgs 90 
                    +g+iGlG++ +++a +  ++ g+k++ y++ ++  e   + +a+ + ++ +l++  d++ + v+ ++++ +++++  ++++k+g+ l++++
     KKY21911.1 169 LGIIGLGNISKKLAFKAgVALGMKIHYYDVIRQPPEVEQSLNATYHPNLTSLLQVSDCISIHVPLNTHTHHLLNStTISQMKSGSRLVNTA 259
                    79************9997899********766666655555788899999************************999999***99999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.33s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 2221.24
//
Query:       KKY21912.1  [L=1515]
Description: putative gyf domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-16   59.5   1.9    2.2e-16   59.2   0.4    2.1  2  GYF          GYF domain
  ------ inclusion threshold ------
       0.38   10.6   2.1        1.1    9.2   2.1    1.7  1  Homeodomain  Homeodomain


Domain annotation for each model (and alignments):
>> GYF  GYF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       1.2   1.1e+04       8      16 ..      81      89 ..      80      90 .. 0.78
   2 !   59.2   0.4   2.5e-20   2.2e-16       1      45 []     749     793 ..     749     793 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.2
         GYF  8 gevqGPFss 16
                ++ qGP+ +
  KKY21912.1 81 SNYQGPYRN 89
                578****75 PP

  == domain 2  score: 59.2 bits;  conditional E-value: 2.5e-20
         GYF   1 WeYkdpqgevqGPFsseeMqkWykagYFkdgllvrrvedsefysl 45 
                 W Y+dpqg++qGP+s+ eM++W+kag+F+ +l+v+r ed ++++l
  KKY21912.1 749 WIYRDPQGNIQGPWSGLEMHDWFKAGFFTAELQVKRLEDHDYEPL 793
                 99***********************************99999886 PP

>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.1   0.00012       1.1       5      36 ..     855     886 ..     854     893 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00012
                  SSS-HHHHHHHHHHHHHSSS-SHHHHHHHHHH CS
  Homeodomain   5 ttftkeqleeLeklFeenrypsaeereeLAkk 36 
                  tt+t+eq ++Le+  +e++y+ a+++e+LA++
   KKY21912.1 855 TTLTAEQQNALERRKQEEQYLMARQKEHLAQQ 886
                  799***************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.03u 0.35s 00:00:01.38 Elapsed: 00:00:00.55
# Mc/sec: 8226.70
//
Query:       KKY21913.1  [L=375]
Description: putative alcohol dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-17   62.7   0.7    5.4e-17   62.0   0.7    1.4  1  ADH_zinc_N    Zinc-binding dehydrogenase
    4.5e-09   37.5   0.3    8.7e-09   36.5   0.1    1.6  2  ADH_zinc_N_2  Zinc-binding dehydrogenase
    3.5e-07   30.1   0.0      8e-07   28.9   0.0    1.6  1  ADH_N         Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
      0.018   14.5   0.3      0.027   13.9   0.3    1.3  1  adh_short     short chain dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.7   1.2e-20   5.4e-17       1     129 [.     189     322 ..     189     323 .. 0.91

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 1.2e-20
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTESEEEET.....TTCHHHHHHHHHTT..TSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCT CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakk.lGadeviny.....keadlverikeltg..gegvdvvfecvGsgatleaalkllkpgGrlvvvGgg 91 
                 gv l+a+ ++  +G +v + ++s+ek+e a +  Ga+  +ny     ++ +lve++ke tg  ++ +d +++ +G g+ ++   kllk gG +v++G+ 
  KKY21913.1 189 GVALMALGFLSKMGTRVWVSSGSQEKIERATEeAGATGGVNYkeqgwEN-KLVEMLKEKTGgkKKTLDGIIDGAG-GDIVDKGRKLLKMGGIIVTYGMT 285
                 899***************************999*********7776555.7*********745778999******.*********************97 PP

                 SSEEEEEHHHHH.HTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  92 kgeeefdlrnll.lkeksilGsllgslreefkealdlla 129
                   ++ +++ +++ +k++ ++Gs++gs r+efk++++++a
  KKY21913.1 286 LAPK-MPWLMQAvMKNIELKGSTMGS-RKEFKDMVAFVA 322
                 7766.88888666*************.*********997 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         4   1.8e+04      21      50 ..     177     205 ..     170     220 .. 0.57
   2 !   36.5   0.1   1.9e-12   8.7e-09       2     133 .]     223     361 ..     222     361 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4
                   T-EEEEEES-HHHHH.HHHHHHEEEEEEEE CS
  ADH_zinc_N_2  21 egvDvvldtvggealleaslkvlpggGrlv 50 
                   +g Dv +  +gg  +   +l +l++ G+ v
    KKY21913.1 177 QGKDVLVTGIGGGVA-LMALGFLSKMGTRV 205
                   556777777775555.23345664446543 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 1.9e-12
                   T-SEEEETTSTTHH........HHH-T..T-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HH CS
  ADH_zinc_N_2   2 GAdevidyrtedfe........aatgg..egvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqad 88 
                   GA+  ++y+++ +e        ++tgg  +  D ++d +gg+   ++ +k+l+ gG +v++g++ +++  +  ++  k+  +k +++ s     +++
    KKY21913.1 223 GATGGVNYKEQGWEnklvemlkEKTGGkkKTLDGIIDGAGGDIV-DKGRKLLKMGGIIVTYGMTLAPKMPWLMQAVMKNIELKGSTMGS-----RKE 313
                   6777788999999999999998666555588*********9988.*******888999**99765666666665556555566666653.....677 PP

                   HHHHHHHHHHHHH----EEEE.EEGGG...HHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  89 ileelaalieeGklrpvvdrv.fplee...aaeAhrylesgrarGKiVl 133
                    +++++a+++++kl+pvv+r+  ++e+   +   +++l++g+ +GK+V+
    KKY21913.1 314 -FKDMVAFVADKKLHPVVSRTvVGIENlegLESLFQDLKHGKQFGKLVV 361
                   .*******************988866655599****************8 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   1.8e-10     8e-07       3     105 ..      35     139 ..      33     142 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 1.8e-10
                 EEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS.--TT-EEEE-SEEE-SSSHHHHTT-G..GG-TTBEETTTSS-SSSBSE CS
       ADH_N   3 evlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkk.lkvGdrVvvepliscgeCaaCkegee..nlCeeakllgvsldGgfaey 98 
                 e+li ++aa++++ Dl + ++     + +p+ lG + +G+v+++gp+ ++ +  G+rV+v+p i  +++++  e+e    +C+ +++  +  +G++ ey
  KKY21913.1  35 ELLISMRAAALNHRDLFLRQHLYPGLTFAPVPLGADGSGVVVSCGPDADSsFWNGKRVIVNPGIGWKDAPEGPEEEFggIYCTLGGTKFY-PKGTLGEY 132
                 789*************9999988888889999***************998899************9999999988875457766655544.59****** PP

                 EEECGGG CS
       ADH_N  99 vvvpekk 105
                 +vv++++
  KKY21913.1 133 FVVDQSE 139
                 9999876 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3     6e-06     0.027       2      88 ..     180     264 ..     179     301 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6e-06
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGit 88 
                  vlvtG ++G+ +     l k+G +v v + s+ek+e++ +e +++ g  + + +    + + ve l ek   k ++ld ++ +AG  
  KKY21913.1 180 DVLVTGIGGGVALMALGFLSKMGTRVWVSSGSQEKIERATEEAGATgG--VNYKEQGW-ENKLVEMLKEKTGGKKKTLDGIIDGAGGD 264
                 69****************************************999722..22222222.24445555555555558899999999974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.52
# Mc/sec: 2188.32
//
Query:       KKY21914.1  [L=579]
Description: putative transcriptional regulator medusa [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.35s 00:00:01.04 Elapsed: 00:00:00.55
# Mc/sec: 3190.49
//
Query:       KKY21915.1  [L=508]
Description: hypothetical protein UCRPC4_g03418 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.017   15.8   3.2      0.061   14.0   3.2    2.0  1  DUF2477   Protein of unknown function (DUF2477)


Domain annotation for each model (and alignments):
>> DUF2477  Protein of unknown function (DUF2477)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   3.2   3.4e-06     0.061      83     131 ..     145     194 ..     105     201 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.4e-06
     DUF2477  83 awqqpgnpyssgqrpaGltyaglppv...grGddiahhccccpccscchcpr 131
                 a ++++   +s  r+ Gl    +  +     G d  h c c p c+c  cp 
  KKY21915.1 145 ARSKSTP--NSKSRKRGLDEMNIGEIsyeMTGKDAEHECGCGPTCECSFCPL 194
                 3333332..34445556654444444111579******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 3097.42
//
Query:       KKY21916.1  [L=159]
Description: hypothetical protein UCRPC4_g03419 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-09   37.2   9.7    4.1e-09   36.4   9.7    1.4  1  bZIP_1     bZIP transcription factor
     0.0022   17.9   3.0     0.0027   17.7   3.0    1.2  1  GvpL_GvpF  Gas vesicle synthesis protein GvpL/GvpF
      0.009   16.0   6.8      0.014   15.3   6.7    1.3  1  CEP63      Centrosomal protein of 63 kDa
  ------ inclusion threshold ------
      0.036   14.1   0.3      0.051   13.6   0.3    1.3  1  LOH1CR12   Tumour suppressor protein
       0.29   11.5   5.2       0.53   10.7   5.2    1.5  1  CLZ        C-terminal leucine zipper domain of cyclic nucleot
       0.42   10.7  15.3      0.097   12.8  11.1    2.1  2  bZIP_2     Basic region leucine zipper
        1.5    9.4  14.2        2.8    8.5  14.2    1.6  1  bZIP_Maf   bZIP Maf transcription factor


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   9.7   1.6e-12   4.1e-09       6      60 ..      41      95 ..      38     105 .. 0.95

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 1.6e-12
                XXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  6 rekrkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLkseleelkkevekLk 60
                r +r+++NR ++r++R+RK++ +++Le++ ++L ++ ++L +   + ++e++kL 
  KKY21916.1 41 RLRRRAQNRASQRAFRERKEKHVKALEQQLSKLHEKHHDLLESYTRQADEIAKLN 95
                89**************************************************996 PP

>> GvpL_GvpF  Gas vesicle synthesis protein GvpL/GvpF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   3.0     1e-06    0.0027     128     191 ..       9      79 ..       2     125 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1e-06
   GvpL_GvpF 128 elleedpelrelreeieaases.......gtayllrkrlgqrleealeerreelaeeleeaLaplaeevre 191
                  +l+++++l+e  +++++a++         t+ l+r++++++ ++a +er+e+++++le++L++l e+++ 
  KKY21916.1   9 DVLDTSETLSEHDRRRRGAGNYaedkgniSTTRLRRRAQNRASQRAFRERKEKHVKALEQQLSKLHEKHHD 79 
                 5677777787777777777777777888899**********************************999876 PP

>> CEP63  Centrosomal protein of 63 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   6.7   5.4e-06     0.014      28      87 ..      33      92 ..      30     108 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.4e-06
       CEP63 28 aqtraletrlkireeeLasarnaldekhkEvgllrqqleelekekqelvakyeqqlqklr 87
                ++ + + trl+ r ++ as r+  ++k+k v+ l+qql +l++++++l + y +q +++ 
  KKY21916.1 33 DKGNISTTRLRRRAQNRASQRAFRERKEKHVKALEQQLSKLHEKHHDLLESYTRQADEIA 92
                55667889**********************************************988763 PP

>> LOH1CR12  Tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.3     2e-05     0.051      34      94 ..      40      99 ..      34     129 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2e-05
    LOH1CR12 34 tRlqeHlavcAkavAadqaklverikevdakiitllaelrekqkqyasyaealskvnelsd 94
                tRl    +  A++ A+   k  +++k +++++++l ++ ++  + y+  a++++k+n++++
  KKY21916.1 40 TRLRRRAQNRASQRAFRERK-EKHVKALEQQLSKLHEKHHDLLESYTRQADEIAKLNRIQE 99
                67777777778888886655.7899*******************************99875 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   5.2   0.00021      0.53      20      69 ..      50     101 ..      40     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00021
         CLZ  20 akagaeqkeleekverLessLeaLqtrlarLlaeyessqrkLkq..RitkLE 69 
                 a+++a ++  e+ v+ Le++L  L+ +   Ll+ y+  + ++ +  Ri++L 
  KKY21916.1  50 ASQRAFRERKEKHVKALEQQLSKLHEKHHDLLESYTRQADEIAKlnRIQELN 101
                 45557788899*************************9999887433777775 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.2     3e+03       4      10 ..      20      26 ..      17      31 .. 0.51
   2 ?   12.8  11.1   3.8e-05     0.097       6      48 ..      41      84 ..      38     105 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.2
                XXXXXXX CS
      bZIP_2  4 eyrerRr 10
                 +r+rR 
  KKY21916.1 20 HDRRRRG 26
                4444444 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 3.8e-05
                XXXXX.XXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  6 rerRr.kNreAarrsRekkkakeeeleervkeLeeeNaqLrqkv 48
                r rRr +Nr++ r +Re+k ++ + le+++ +L e+   L++ +
  KKY21916.1 41 RLRRRaQNRASQRAFRERKEKHVKALEQQLSKLHEKHHDLLESY 84
                789999*****************************999987654 PP

>> bZIP_Maf  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  14.2    0.0011       2.8      31      88 ..      41      98 ..      16     102 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0011
    bZIP_Maf 31 qrRRrlKNrgyakscrkrrlqqkeelekekeeleeelerlqqelsrlrqekdalkrkn 88
                + RRr +Nr  ++  r+r+ +  + le++ ++l e+ + l + ++r+  e  +l r +
  KKY21916.1 41 RLRRRAQNRASQRAFRERKEKHVKALEQQLSKLHEKHHDLLESYTRQADEIAKLNRIQ 98
                579************************************9999999998877776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2215  (0.123543); expected 358.6 (0.02)
Passed bias filter:                      974  (0.0543254); expected 358.6 (0.02)
Passed Vit filter:                       118  (0.00658152); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 1043.20
//
Query:       KKY21917.1  [L=358]
Description: putative small g-protein gpa2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   6.9e-110  367.5   2.2   8.1e-110  367.3   2.2    1.0  1  G-alpha       G-protein alpha subunit
    4.1e-13   49.1   0.7    6.8e-09   35.4   0.0    2.7  2  Arf           ADP-ribosylation factor family
    1.2e-05   24.8   0.2     0.0063   15.9   0.1    2.3  2  Gtr1_RagA     Gtr1/RagA G protein conserved region
     0.0091   15.4   0.8       0.24   10.7   0.0    2.5  3  FtsK_SpoIIIE  FtsK/SpoIIIE family
  ------ inclusion threshold ------
      0.018   15.2   0.1        1.5    9.1   0.0    2.7  2  Roc           Ras of Complex, Roc, domain of DAPkinase
       0.02   15.0   0.0        5.9    7.0   0.0    2.6  2  MMR_HSR1      50S ribosome-binding GTPase
      0.026   14.1   0.9          1    8.8   0.0    2.3  2  GTP_EFTU      Elongation factor Tu GTP binding domain
      0.042   13.6   0.0      0.089   12.5   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
      0.053   13.9   0.0       0.17   12.3   0.0    1.8  2  AAA_16        AAA ATPase domain
      0.061   12.7   0.0       0.13   11.7   0.0    1.5  1  TniB          Bacterial TniB protein


Domain annotation for each model (and alignments):
>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.3   2.2  4.5e-113  8.1e-110       3     354 .]      18     348 ..      16     348 .. 0.97

  Alignments for each domain:
  == domain 1  score: 367.3 bits;  conditional E-value: 4.5e-113
                 XXXXXXXXXXXXXXXXXE..EEEEEEEESTTSSHHHHHHHHHHHCS----HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT.......HHHC-SS-SCCC CS
     G-alpha   3 tssaidkslkaerkarkkkrevkllllGqseSGKsTilkqlkllykkgfseeelatwraviqlnivrsiktilealesleselsesfelqelkerldpl 101
                 ++ +id++l+++rk + +  ++k+lllG++eSGKsTi+kq+++++k+gf ++e+++ +avi++n+v ++k +l+++++++ e+     + + k +++ +
  KKY21917.1  18 QNARIDRQLRQDRKVDAR--TIKILLLGAGESGKSTIIKQMRIIHKGGFLDDERRENKAVIYSNLVVAFKVLLDIMNTEGFEF----GNTDTKSAAEVI 110
                 7899********999999..**********************************************************99999....999999999999 PP

                 S-HCHHHH..........HHCCHHC-HCHHHHHHHHCCSHHHHHHHCCGCCTT--TTHHHHHCTHHHHCSTT----CHHHHCS-----SEEEEEEECT- CS
     G-alpha 102 kkveasliaklssateeeqeiefnpraevgedikaLwndpgiqelyerrnkiklednaeyFlddleritspdYlptddDilkarlktvGisetkfevds 200
                  + e+s  +          + ++     v++++k++w+d g+q+ +++ +++ l dn+ +++++++r++++ +lp d+D+l+arl+t+Gi+et fe++ 
  KKY21917.1 111 EATEDSVES---------HQAFIDT--TVRDAMKKMWEDDGVQKAVAKGHEFALHDNLTFYFQNIDRMFAEGWLPDDQDMLHARLRTTGITETLFELG- 197
                 999999644.........8888888..**********************************************************************9. PP

                 TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GGGTTSEEEEEEE-HHHHHHHCCCS-GGGCCTT-- CS
     G-alpha 201 klefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkllkntpiiLflnKlDileeKlkkgklskyfpsye 299
                  l+fr++dvgGqrserkkW+++fd+v++++F+vsls++dq+l ed++ n+++es+ lF++++n +++k++piiLflnK+D+++eKl k+ +s++fp+y 
  KKY21917.1 198 HLNFRMMDVGGQRSERKKWIHCFDGVQCLLFMVSLSGYDQCLVEDQNANQMHESMMLFESLVNGEWFKRKPIILFLNKIDLFREKLAKSAISTHFPDYR 296
                 *************************************************************************************************** PP

                 H.CCHHHHHHHHHHHHHHCCCCCCESGGSCEEEEEE-TT-HHHHHHHHHHHHHHH CS
     G-alpha 300 grkndlesvlkylrnkFeeihkeksnnrrkiythftsatdtkevqkviesvrdti 354
                 g+++d + +++y+ ++F+ i++   n +r+iy+h+t+atdt+ ++ ++++v+d+i
  KKY21917.1 297 GKNDDEQAAVNYFSERFKGINR---NADREIYIHYTNATDTNLLKVTMANVQDMI 348
                 *9999***************88...8999************************98 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   8.7e-05      0.16      11      35 ..      33      57 ..      24      62 .. 0.85
   2 !   35.4   0.0   3.8e-12   6.8e-09      44     138 ..     185     290 ..     176     348 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.7e-05
                .TTEEEEEEEESTTSSHHHHHHHHH CS
         Arf 11 kkkelrilllGLDnaGKtTilkklk 35
                  + ++illlG  ++GK+Ti+k+++
  KKY21917.1 33 DARTIKILLLGAGESGKSTIIKQMR 57
                4789*****************9975 PP

  == domain 2  score: 35.4 bits;  conditional E-value: 3.8e-12
                 SSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEE.....ETT.....-CTTHHHHHHHHHHHCTSGCCTTSEEEEEEE-TTS.TTSS CS
         Arf  44 PTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvv.....Dsa.....dreRleeakeeLkalleeeelkevallvlaNKqDl.peal 131
                  T+g +    e  +l+f++ DvGGq++ R+ W + f+ ++ ++f+v     D +     + + ++e+   +++l++ e  k+ +++++ NK+Dl +e l
  KKY21917.1 185 RTTGITETLFELGHLNFRMMDVGGQRSERKKWIHCFDGVQCLLFMVslsgyDQClvedqNANQMHESMMLFESLVNGEWFKRKPIILFLNKIDLfREKL 283
                 5778877788999*******************************9933333222222114458999999999*********************833455 PP

                 -HHHHHH CS
         Arf 132 seeelre 138
                  ++ +++
  KKY21917.1 284 AKSAIST 290
                 5555555 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0018       3.3       1      17 [.      38      54 ..      38     124 .. 0.88
   2 !   15.9   0.1   3.5e-06    0.0063      39     176 ..     191     348 ..     168     357 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0018
   Gtr1_RagA  1 kvLLmGksgsGKtsmrs 17
                k+LL+G ++sGK+++ +
  KKY21917.1 38 KILLLGAGESGKSTIIK 54
                89************976 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 3.5e-06
   Gtr1_RagA  39 ksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDve.......sreleedletlkeilealr..qyspeakvfvlihKmDliqede 128
                 ++ +  lg+l++ ++D+gGq++  ++       + f  v+ l++++  +       +++  +++++   ++e l+  +  ++  +  +++K+Dl +e+ 
  KKY21917.1 191 ETLF-ELGHLNFRMMDVGGQRSERKKW-----IHCFDGVQCLLFMVSLSgydqclvEDQNANQMHESMMLFESLVngEWFKRKPIILFLNKIDLFREKL 283
                 4444.6899***********9987775.....799***********9998888887444555555555666666512456888999************* PP

   Gtr1_RagA 129 reeifeerkeeireeiekleke.................eiqffaTSiwdeslykAfssivqkli 176
                  +++++++  ++r + ++ +                   ei ++ T   d  l k     vq++i
  KKY21917.1 284 AKSAISTHFPDYRGKNDDEQAAvnyfserfkginrnadrEIYIHYTNATDTNLLKVTMANVQDMI 348
                 ***99999999998888655445566667777777777777777777777777776666666665 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00013      0.24      16      59 ..      15      56 ..       7      58 .. 0.78
   2 ?    2.2   0.1     0.053        95      99     155 ..     100     156 ..      81     167 .. 0.79
   3 ?   -2.2   0.0       1.2   2.1e+03       2      37 ..     239     275 ..     239     277 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00013
                  -TTEEEEEEETTS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE 16 sqlpvalgkeisgnplvldlkkmashllvaGatgsGKStalntL 59
                  +q+ +a+   + ++  ++d+++    +l++Ga +sGKSt ++ +
    KKY21917.1 15 GQAQNARIDRQLRQDRKVDARTIK--ILLLGAGESGKSTIIKQM 56
                  566666666666777778888888..*************99876 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.053
                   B-SHHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHH..HHHHHHHHHHTT---B-TT-.. CS
  FtsK_SpoIIIE  99 atdperalraleeLvkemeeryalfreagvrsiaa..ydgeiaedpldifgdvflvlDn 155
                    td + a++++e+ ++ +e+ +a+++ +  + +++   d++++++ ++  g  f + Dn
    KKY21917.1 100 NTDTKSAAEVIEATEDSVESHQAFIDTTVRDAMKKmwEDDGVQKAVAK--GHEFALHDN 156
                   6899**********************9999999997766666665544..444566665 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.2
                   HHHHHTSHHHHT---TTEEEEEEET.TS-EEEEEGGG CS
  FtsK_SpoIIIE   2 Llevleskkfrtessqlpvalgkei.sgnplvldlkk 37 
                   L+e+++ ++++++ + ++ ++  e+  ++p++l+l+k
    KKY21917.1 239 LVEDQNANQMHESMMLFESLVNGEWfKRKPIILFLNK 275
                   7889999999999999999999999999999999877 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00082       1.5       1      19 [.      38      56 ..      38      77 .. 0.93
   2 ?    3.3   0.0     0.052        94      53     119 ..     196     277 ..     166     278 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00082
                EEEEESSTTSSHHHHHHCH CS
         Roc  1 KvvlvGdsgvGKtsllkrf 19
                K++l+G +++GK++++k++
  KKY21917.1 38 KILLLGAGESGKSTIIKQM 56
                9***************985 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.052
                 TTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEE.....EE.....GHHHHCHHHHHHHHHHH.....CSSS-EEEEEE-TT CS
         Roc  53 vkkvklniWDtaGqerfrslhplylreaalailv.....yd.....srssenlkeWlkelkkv.....agkspvilvgnkiD 119
                 + ++++++ D++Gq   r+   + + + ++++++     yd     +++ ++++e +  +++       +++p+il  nkiD
  KKY21917.1 196 LGHLNFRMMDVGGQRSERKKWIHCFDGVQCLLFMvslsgYDqclveDQNANQMHESMMLFESLvngewFKRKPIILFLNKID 277
                 4567889999999988776444444444444444133333455543223334444333333331111245779999999998 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1    0.0099        18       1      19 [.      38      56 ..      38     129 .. 0.89
   2 ?    7.0   0.0    0.0033       5.9      33     114 .]     186     275 ..     171     275 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0099
                EEEEEESTTSSHHHHHHHH CS
    MMR_HSR1  1 evaivGrpNvGKStLinal 19
                +++++G   +GKSt+i+++
  KKY21917.1 38 KILLLGAGESGKSTIIKQM 56
                58899***********987 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0033
                 SSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETT......TTCSHHHHHHHHHHHHH.............TTSEEEEE CS
    MMR_HSR1  33 TrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlillvvdas......eeklkpldeeleellee.............akkplilv 111
                 T+ i+e  ++l++ +++++D+ G        ++++k++    + ++ +l++v++s            +d++ +++ e+             ++kp+il 
  KKY21917.1 186 TTGITETLFELGHLNFRMMDVGG-Q------RSERKKWIHCFDgVQCLLFMVSLSgydqclV-----EDQNANQMHESmmlfeslvngewfKRKPIILF 272
                 666777777777889********.3......3455555555555889*****9885443331.....45555555444666667888889999999999 PP

                 EES CS
    MMR_HSR1 112 lnk 114
                 lnk
  KKY21917.1 273 LNK 275
                 998 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.2     0.019        35       3      77 ..      36     126 ..      34     127 .. 0.62
   2 ?    8.8   0.0   0.00058         1     121     143 ..     265     287 ..     239     348 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.019
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHST............HCHSHHHH.HHTSCSSCEEEEEE...TTCSSEEEEEEEE CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgekaeeerv............lDtlkeEr.ergiTiksaaisle...ketkkylinliDt 77 
                 +++i ++g  ++GK+T++ ++   ++    + e++e+++v            lD +++E  e g T + +a+++    +++ + + ++iDt
  KKY21917.1  36 TIKILLLGAGESGKSTIIKQMRIIHKGGFLDDERRENKAViysnlvvafkvlLDIMNTEGfEFGNTDTKSAAEVIeatEDSVESHQAFIDT 126
                 57788999999*******9876554444443444443334567777788888887777743556666666655553433555556666665 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00058
                 TTTEEEEEEESCGSTHHHHHHHH CS
    GTP_EFTU 121 egvpiivfiNKmDrlkaelkeiv 143
                 ++ pii+f+NK+D  +++l +++
  KKY21917.1 265 KRKPIILFLNKIDLFREKLAKSA 287
                 5778***********99998765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     5e-05     0.089      19      39 ..      32      53 ..      25      60 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5e-05
      AAA_29 19 idlkg.atlltGpsGsGKSTll 39
                +d +   +ll G+ +sGKST++
  KKY21917.1 32 VDARTiKILLLGAGESGKSTII 53
                45455569*************9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.4e-05      0.17      26      97 ..      38     120 ..      16     190 .. 0.72
   2 ?   -1.2   0.0       1.3   2.3e+03     135     150 ..     267     282 ..     240     320 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.4e-05
      AAA_16  26 lvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde.................aesaeleaw 97 
                  +ll G+  +GKs+++++ +  + k  g fl  + +++ +a+ ys l+ a+ +  ll  +++e                 a+++++e +
  KKY21917.1  38 KILLLGAGESGKSTIIKQMR-IIHK--GGFLDDERREN-KAVIYSNLVVAF-K-VLLDIMNTEgfefgntdtksaaevieATEDSVESH 120
                 489*****************.6665..57999999999.8899999*****.7.89999999955555543333333333222222333 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.3
      AAA_16 135 rplvlvlDdlqwadea 150
                 +p++l+l  ++ ++e 
  KKY21917.1 267 KPIILFLNKIDLFREK 282
                 5677777777777663 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     7e-05      0.13      32      75 ..      33      78 ..      13      85 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7e-05
        TniB 32 rkrmpnlllvGdsnnGKtmivekFarlhppe..kdedaekvpvlvv 75
                  r+ ++ll+G  + GK++i+++ +  h+    +de++e+  v++ 
  KKY21917.1 33 DARTIKILLLGAGESGKSTIIKQMRIIHKGGflDDERRENKAVIYS 78
                678899*******************999876336788888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 2252.81
//
Query:       KKY21918.1  [L=464]
Description: putative glycoside hydrolase family 76 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.6e-136  454.9  22.7   3.4e-136  454.6  22.7    1.1  1  Glyco_hydro_76  Glycosyl hydrolase family 76
  ------ inclusion threshold ------
       0.14   11.2  11.5      0.033   13.3   2.7    2.4  3  Glyco_hydro_88  Glycosyl Hydrolase Family 88


Domain annotation for each model (and alignments):
>> Glyco_hydro_76  Glycosyl hydrolase family 76
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  454.6  22.7  3.8e-140  3.4e-136       2     359 ..      34     399 ..      33     406 .. 0.96

  Alignments for each domain:
  == domain 1  score: 454.6 bits;  conditional E-value: 3.8e-140
                     XHHHHHHHHHHHHHHCETTECCTCTCBSCES......-GHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHCCCTCEE-SSSTTCTCSSEHHHHH CS
  Glyco_hydro_76   2 iksaaatiakgllkyYkgnesggtpgnlpdp......yywWeagalfgalidywrltgdstyndlitqallaqagenydympanqsrtegnDDqa 90 
                     +k+  atia+++++yY gnesg+tpg lp p      yywWeaga+fga+++yw++tgd++ynd+++qall+q+ge ++y+panqs+++gnDDqa
      KKY21918.1  34 VKDVLATIAYDMMSYYSGNESGQTPGLLPGPcssdscYYWWEAGAMFGAMVNYWQYTGDTSYNDVVKQALLFQRGEHNNYNPANQSSDMGNDDQA 128
                     79999**************************9999999********************************************************* PP

                     HHHHHHHHHHHH......H--HHHHHHHHHHHHHHHHCB-SCSCCS-BBSEC..ESS--SEEEHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHH CS
  Glyco_hydro_76  91 fwglaamtaaernfpep.tdepswLalAqavfntqasrwdeetcgGGlrWqiftwnsgydyknsisngplfqlaarLarytgnetYlewAekvwd 184
                     fw+++am+aae nf++p +d p+wL+l++avfn+qas+wd+ tcgGG+rWq++++ +gy++knsis g++fqlaarLarytgn tY++wAekv  
      KKY21918.1 129 FWAFSAMDAAESNFDAPgSDYPTWLSLVDAVFNFQASEWDDATCGGGIRWQVYSFGNGYNLKNSISDGGFFQLAARLARYTGNTTYADWAEKVPP 223
                     *********************************************************************************************75 PP

                     HHHHHSCS.BTTTS-B-SEEETTTCCEEEE---HHHHHHHHHHHHHHHHHHH.--HHHHHHHHHHHHHHHHHCEEC..TTEEEEEE-TTSTTCCT CS
  Glyco_hydro_76 185 Wvedvgli.ddedwlvyDgasvednctdinklqwtYnqGtylsgaaylynaT.gdekWldrvkgllnatlstffpd..gnilyevacepsekcnn 275
                         +++  + +  +v+D+++++dnct+++++ wtYn+Gt+++g ay+yn+T g+++W++r+++ll+++  +f ++  +n+++e+ ce + +cnn
      KKY21918.1 224 D---SPFSsEGNALTVWDNTNTDDNCTTVDHYLWTYNAGTMIAGSAYMYNYTnGSSTWQTRLEQLLEGAWTYFPSEygSNTMSEIECEVKANCNN 315
                     3...3333367889*******************************************************8888888*************999*** PP

                     THHHHHHHHHHHHHHHH..SHHHHHHHHHHHHHHHHHHHTTTB...TTTSB-TTTTTSSCCHHHHHHHHCCHHH.......... CS
  Glyco_hydro_76 276 DqrsFkgilarwlaltaqlapetadtiepllrasaeaaakscsggsdgttcglkwlkgtwdgdaglgeqmsaleviqallveek 359
                     Dq sFk++l+rwl+ t+ lap+ta++i+ +l +s   aa +c gg++g+ cg +w+++twdg++g+g+qm+a++vi  +l++++
      KKY21918.1 316 DQSSFKAYLSRWLGVTTLLAPFTASEIQAKLYNSSIGAAGQCVGGDNGRLCGRRWYSTTWDGSSGVGQQMAAMSVIGTQLLTQD 399
                     **************************************************************************9999888774 PP

>> Glyco_hydro_88  Glycosyl Hydrolase Family 88
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.7   3.7e-06     0.033      28      68 ..      73     119 ..      63     220 .. 0.77
   2 ?    1.8   2.6     0.011     1e+02      20      48 ..     247     275 ..     175     291 .. 0.70
   3 ?    1.9   2.1     0.011        95      21      50 ..     248     277 ..     232     327 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.7e-06
                     .HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCTTS-......C CS
  Glyco_hydro_88  28 ewtnGvflsglleayeatgdkeyldyakawadslideggk......t 68 
                      w+ G++++++++++++tgd  y d++k+    +  e+++       
      KKY21918.1  73 WWEAGAMFGAMVNYWQYTGDTSYNDVVKQALLFQRGEHNNynpanqS 119
                     4***************************9877777776664444431 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.011
                     TSSTTCCE.HHHHHHHHHHHHHHHHH--H CS
  Glyco_hydro_88  20 elkkenewewtnGvflsglleayeatgdk 48 
                     ++ ++  w ++ G+++ g +++y++t+ +
      KKY21918.1 247 TTVDHYLWTYNAGTMIAGSAYMYNYTNGS 275
                     23344557777777777777777777655 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.011
                     SSTTCCE.HHHHHHHHHHHHHHHHH--HHH CS
  Glyco_hydro_88  21 lkkenewewtnGvflsglleayeatgdkey 50 
                     + ++  w ++ G+++ g +++y++t+ +  
      KKY21918.1 248 TVDHYLWTYNAGTMIAGSAYMYNYTNGSST 277
                     446677*******************98764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3186.88
//
Query:       KKY21919.1  [L=449]
Description: putative gtp cyclohydrolase-2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-56  188.4   0.0    3.9e-55  185.9   0.0    1.9  1  GTP_cyclohydro2  GTP cyclohydrolase II


Domain annotation for each model (and alignments):
>> GTP_cyclohydro2  GTP cyclohydrolase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.9   0.0   2.2e-59   3.9e-55       4     162 ..     103     391 ..     100     392 .. 0.95

  Alignments for each domain:
  == domain 1  score: 185.9 bits;  conditional E-value: 2.2e-59
                      EEEEEEETTEE.EEEEEE--.....EEEEEE-.............................................................. CS
  GTP_cyclohydro2   4 aeaklptrfge.frliayedkvdgkehlalvkgdi........................................................... 37 
                      ++a++pt  g+ + l+ y+++vd+kehla+v+g+                                                            
       KKY21919.1 103 VRARIPTVNGTeMFLHLYHNDVDNKEHLAIVFGNKirsqsldkpregetemdrmirgayvgrlrpgrissridtgasssstlpptsspsistld 196
                      5899***9966599*******************999********************************************************** PP

                      .............................................................EEEEEE--HHHHHS-B--TTTTTHHHHHHHHHH CS
  GTP_cyclohydro2  38 ...........................................................pvlvRvHsecltgDvlgslrcdcgeqldealelia 72 
                                                                                  +l+R+Hsec+tg++++s+rcdcgeqldea++l++
       KKY21919.1 197 sldrrkptppsalsltsvpedsplpsttshpttsfpapistpttvnpasipprpepsqkSPLIRIHSECYTGETAWSARCDCGEQLDEAARLMS 290
                      ****************************************************9999999669*******************************9 PP

                      ......HH-.EEEEEE--TTTTTHHHHHHHHHHHHHCT--HHHHHHHHT--S-----HHHHHHHHHTT...--EEEEE-S-HHHHHHH..CTT. CS
  GTP_cyclohydro2  73 ......eegrGvlvylrqegrgigllnklkayalqdeglDTveanlalglpadardygiaaqILkdlg...vkkirLlTnnpekveaL..egfg 155
                            +++ Gv++ylrqegrgigl +klkay+lqd+g+DTveanl l++padar+yg+a+++L dlg    + +rLlTnnp+kv+a+   +++
       KKY21919.1 291 lpstlsTSKGGVIIYLRQEGRGIGLSEKLKAYNLQDMGADTVEANLLLRHPADARSYGLATAMLLDLGlggEEGVRLLTNNPDKVRAIegPNRE 384
                      999*996666**********************************************************666689**************666789 PP

                      ...SEEE CS
  GTP_cyclohydro2 156 ievverv 162
                      ++v erv
       KKY21919.1 385 VRVRERV 391
                      9999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3021.67
//
Query:       KKY21920.1  [L=639]
Description: putative uracil permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.6e-148  494.5  41.7   3.1e-148  494.2  41.7    1.1  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami
  ------ inclusion threshold ------
        1.1    9.6   8.0       0.78   10.0   0.5    2.9  2  DUF2304         Uncharacterized conserved protein (DUF2304)


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  494.2  41.7  3.4e-152  3.1e-148       1     440 []     110     561 ..     110     561 .. 0.98

  Alignments for each domain:
  == domain 1  score: 494.2 bits;  conditional E-value: 3.4e-152
  Transp_cyt_pur   1 pvpeeeRtwktlnlfsiWlganlnintwvigalg.lalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrv 94 
                     pv+ ++R+w+++n++++W+++++nintw+i++++    gL+wwqs+l++++g++i+a fv ++g++Ga y+++fp++ RasfGi+gsl+p+++r+
      KKY21920.1 110 PVEPARRQWRARNFVAFWIADSFNINTWMIASSAiTGNGLSWWQSWLTVWIGYFIAACFVCMTGRIGATYHISFPVVCRASFGIWGSLWPVFNRA 204
                     899*******************************5557********************************************************* PP

  Transp_cyt_pur  95 viaivwfgvqawiGsealllmlgkifgkwleigg..ailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaeg 187
                      +a++w+gvq w+G+e++ +m+ +i+++   +++  + +gt +  +++ff fw+ sl++++++v+kir++f+++a+++p+a ++f iwa++ka+g
      KKY21920.1 205 AMACIWYGVQGWLGGECVWIMITSIWSSYRDVPNgiKGSGTDTQYFLAFFLFWAGSLIAIWFPVHKIRHLFTVKAYFTPAAGIAFFIWAIAKAHG 299
                     ****************************9999997888899999*************************************************** PP

  Transp_cyt_pur 188 .Gpvldkavklgkse...lflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakf 278
                      Gp++++++  + s+    ++s++++ +++fatli+n pDF+r+a+++k ++++qlv++p++f+++++igi+v++ ++++yg+ +w+pld+l++f
      KKY21920.1 300 iGPIVHQPATASGSKlawGIISGIMSSISNFATLIVNDPDFARFATKPKDALWSQLVTIPVGFAVTSFIGIIVSSSSTVIYGEAVWNPLDLLKNF 394
                     *******998887777888**************************************************************************** PP

  Transp_cyt_pur 279 det......agvllililvalaqlgvnisanllsagldlaallPkkinikrgsliaavialvivpwkllssssklftaflsllavflspvagvii 367
                     +        +gv++i+  + laqlg+ni+an++sag+dl+allP+++ni+rg +i+a+++l+++pw+ll+ss++ ft++ls+++vfls++agv+i
      KKY21920.1 395 LHDassaerFGVFVIAAGFTLAQLGTNIAANSVSAGTDLTALLPRYLNIRRGGYICAAVGLAMCPWNLLKSSNS-FTTYLSAYSVFLSSIAGVMI 488
                     *999**********************************************************************.******************** PP

  Transp_cyt_pur 368 adyfvvrrgylklaalytrrrgsaYwyrkgvNwravaayivGiaaglvgvagsvgikvvkgaeklfdlsylvG 440
                      dy+ vr+gyl l  ly+++++s+Y y++g++wr   ayi+Gi++++vg+ g+vg kv+ ga+  ++l ++ G
      KKY21920.1 489 CDYYLVRKGYLDLRGLYSAQASSPYFYWYGWSWRGYTAYICGILINIVGFVGAVGKKVPIGAQYIYRLDFFAG 561
                     ******************************************************************9999865 PP

>> DUF2304  Uncharacterized conserved protein (DUF2304)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   1.7     0.029   2.6e+02      33      77 ..     154     198 ..     142     206 .. 0.85
   2 ?   10.0   0.5   8.7e-05      0.78      21      61 ..     240     278 ..     235     297 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.029
     DUF2304  33 lwlllalilivlslfpqiltvlanllGvgrgtnllfllgivfllv 77 
                  wl ++++ +++++f  ++ ++    ++++++     +gi  +l+
  KKY21920.1 154 SWLTVWIGYFIAACFVCMTGRIGATYHISFPVVCRASFGIWGSLW 198
                 5*********************99999999987777666666655 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 8.7e-05
     DUF2304  21 vrkkklkleysllwlllalilivlslfpqiltvlanllGvg 61 
                 ++ + ++ +y+l+++l++++ +++++fp  + ++ +l+ v+
  KKY21920.1 240 IKGSGTDTQYFLAFFLFWAGSLIAIWFP--VHKIRHLFTVK 278
                 77788899********************..99999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.51
# Mc/sec: 3768.93
//
Query:       KKY21921.1  [L=920]
Description: hypothetical protein UCRPC4_g03424 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-05   24.3   0.0    4.5e-05   23.1   0.0    1.6  1  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase
  ------ inclusion threshold ------
      0.018   14.4   0.0       0.86    8.9   0.0    2.3  2  RNB       RNB domain


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0     5e-09   4.5e-05      61     210 ..     440     592 ..     424     616 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 5e-09
                 .HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T.... CS
       RVT_1  61 alkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrak 159
                 ++++ +++++++  Dl+ +  s p+  ++  l+ f+v ++ ++ +++fls +  +++ +g   + r  k+g+p+  +lS +   +++  ++  +++++ 
  KKY21921.1 440 IARQLHGEQTIIRSDLRWFGPSLPHTTIFTILKYFGVTKTWLDFFEKFLSAPM-RFNQDGPGGQVRERKRGVPMSHTLSDVFGEVTLFCMDFAVNQHTD 537
                 45689999*****************************************7777.555566667899999***************************99* PP

                 ..TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE......... CS
       RVT_1 160 gvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlft.....v 210
                 g +l+r  DD+ +  k k+ +q +++a++e+ +++gl++n+eKt  v+++     v
  KKY21921.1 538 GQFLYRLHDDFWFWGK-KSTCQLAWRAMSEFTESMGLQFNEEKTGSVSLGpldlaV 592
                 **********987765.599************************888766555541 PP

>> RNB  RNB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   9.6e-05      0.86     170     284 ..      95     207 ..      11     311 .. 0.80
   2 ?    3.2   0.0    0.0052        46     160     221 ..     619     681 ..     566     709 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 9.6e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 170 speikllldedkgnrielkveeetkahslveelmllANelvArflseleipailriheepsnekledliklakklglklednsskknlqeslekleeee 268
                 + +i+ ++++d  +  + + e + + +s+  e++l   +lv+++l el +p +   ++ ps++  ed  ++ + +g k e ++++ ++++++  + e++
  KKY21921.1  95 QAKIDPSFPKDRIQHFKSDLERRLELQSVKHEHILFFSRLVTEWLDELDQPLPSTKQPSPSEKPTEDSSSFEN-VGRK-EMQDQRAEWEHFVFDIGEDP 191
                 55666666665556666677777779***********************************888888888877.5545.55555567888888888888 PP

                 xxxxxxxxxxxxxxxx RF
         RNB 269 aeqllselllrllkea 284
                   +++ e+l +l+k+ 
  KKY21921.1 192 DADTIVEYLDKLFKSN 207
                 7777777777776654 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0052
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
         RNB 160 RlkkgalefdspeikllldedkgnrielkveeetkahslveelmllANelvArfl.seleipa 221
                   + g l++d  ++++++d++k  +  ++ + +  a++ v + + + N+ +Arf+ +++++pa
  KKY21921.1 619 DVRWGFLKLDAATSRFIIDQSKVDEHIIELQRQLAAQKSVFSWVQAYNSYLARFFsNNFGKPA 681
                 4455899999**********777666677777777********************66666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.51
# Mc/sec: 5401.56
//
Query:       KKY21922.1  [L=325]
Description: putative phytanoyldioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-07   31.5   0.0    3.2e-07   30.8   0.0    1.3  1  PhyH      Phytanoyl-CoA dioxygenase (PhyH)
  ------ inclusion threshold ------
      0.032   13.0   0.0        4.7    5.9   0.0    2.4  3  DUF1479   Protein of unknown function (DUF1479)


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   3.6e-11   3.2e-07       3     199 ..      25     236 ..      23     246 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 3.6e-11
                 HHSEEEETTSS-HHHHHHHHHHHHHH.......HHHCHTTCCSEEEEECEEESTTCCCEE.CCCHHCHHHHTTHHHHHHHHHHHHTSCEEEEEEEEEEE CS
        PhyH   3 edGylviegflsaeevealraeieal.......ldralesgdkidfffeekaaadedgll.eksinkvghflhprkvadlvrailgqdvyvaavlqsmy 93 
                 +dGy+vi++++++e ++ + +++ +         dr+ +s++  + +++  + + ++g   ++ +++++   +p  v + +  ++g d++      s+ 
  KKY21922.1  25 RDGYVVIKNVIPQERCDYYIDKMFEWagrfpwgFDRNDRSTWTDEHLPTHIKGGMYHGYRvQHERFMWEARTEP-GVIEAFTKLWGTDKLL----ASFD 118
                 79*********************999999999955555555555555555555555555444478888888888.*************985....3444 PP

                 EEEEE-TTTCB-EEEEE-SGGGSTEES...GCCEEEEEEESS-B-TTBT-EEEETTGGGS-CCGTCCHHCSGCCTTS..................CCCT CS
        PhyH  94 qdifkqpkiGgevqpwHqDstflptdp...eesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteae..................ddea 171
                  ++f  p +G++   + q +++++++p     ++v+  i l +  ++ G+l ++ GS k +e+        + t+++                  + ++
  KKY21922.1 119 GMNFTLP-SGTPL-EPTQPWPHVDQNPkrtGMQCVQGIINLAPNGPDDGGLLVMQGSTKIMEEF-------FKTHQGvigratwgssdwfgfdeeEVKW 208
                 3355666.69999.9999999999999888899999************************8883.......33333366689999*******7644444 PP

                 TTGHGSCEEEE.BTTTEEEEEETTSEEE CS
        PhyH 172 kkedeeeavpvevkaGdavlfhgrllHg 199
                  ++   ++  v  ++G+++l+++r++H 
  KKY21922.1 209 FEDRGCKILKVCAEPGSIILWDSRTMHY 236
                 455556899******************5 PP

>> DUF1479  Protein of unknown function (DUF1479)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0   0.00052       4.7      65      97 ..      17      49 ..       5      69 .. 0.84
   2 ?   -3.8   0.0      0.46   4.2e+03     237     255 ..     151     169 ..     148     171 .. 0.87
   3 ?    4.5   0.0    0.0013        12     325     386 ..     222     282 ..     216     297 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.00052
                HHHHHHHHHHTEEEEETSS-HHHHHHHHHHHHH CS
     DUF1479 65 aefsaeikrrGvlvvrgvvpeeeaeewkeeike 97
                 + ++++ r G +v+++v+p+e+ + + +++ e
  KKY21922.1 17 RDWRDDLFRDGYVVIKNVIPQERCDYYIDKMFE 49
                56788999**************99988877765 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.46
                 EEEEEESS-B-TTCT-EEE CS
     DUF1479 237 fQGwlalsdvkpgeGtlrv 255
                  QG++ l   +p++G l v
  KKY21922.1 151 VQGIINLAPNGPDDGGLLV 169
                 69************99987 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.0013
                 -TT-EEEEETT--EEE-SBCSSSS-EEEEE--B-EESHHHHHHHHHHHHHHHHT---TTS-S CS
     DUF1479 325 eaGDyvvWhcdlihavdkehegkkdssvlYipavPltqknaeylarqrkaflrgkpppDFps 386
                 e+G +++W + ++h  + +++ ++ ++v+Y+  +P++    e l+++++ f ++     +p+
  KKY21922.1 222 EPGSIILWDSRTMHY-NCVPKTQNLRAVIYACYTPSSFASPEVLKEKARFFDERMGTTHWPH 282
                 79**********996.78899999***************99999999999988776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.30s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2261.62
//
Query:       KKY21923.1  [L=363]
Description: putative c6 zinc finger domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-07   29.7   0.0    9.7e-07   28.1   0.0    1.8  1  Fungal_trans  Fungal specific transcription factor domain
    0.00029   19.5   0.0    0.00059   18.4   0.0    1.4  1  Cep3          Centromere DNA-binding protein complex CBF3 sub


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   1.1e-10   9.7e-07      75     247 ..      31     193 ..       3     208 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.1e-10
  Fungal_trans  75 raeilihedfsspssslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklG 171
                   +a  ++h+  +    ++ ++q   +l    k+ +d  l   ++   +r+a+ lg+ ++p+ v++      +++ +e  rR+ww+      +i+  l 
    KKY21923.1  31 AALFFLHQGDFLRKHDMRSVQVIAILLGLFKNVGDFGLQPTLMAAGIRIAQCLGMDKEPPTVST-----DPID-QEVSRRIWWTL-----IICEWLQ 116
                   445555999999999********************999999**********************3.....6666.**********7.....7777777 PP

  Fungal_trans 172 rpp...llddsqinlpLPcddddlwesddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdl 247
                   rp     + +s+  ++LP + dd+++ d     +  +    +++ +++  ++++aL+++   +++   +i++ ++  ++
    KKY21923.1 117 RPArpyCIQESDFAVNLPFNLDDEEILDPQLRAHPTG--ARDRPRPVQYHNAMIALSQLYYRFSSRAKCIGHNSEKLES 193
                   77776689************99776666544444444..4789999999999999999999998887777777665554 PP

>> Cep3  Centromere DNA-binding protein complex CBF3 subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.6e-08   0.00059     112     211 ..      23     118 ..       6     129 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.6e-08
                 HHHHHHHHHHHHHHHHTTTTTS--HHHHHHHHHHTTTTHHHHSHHHHHHHHHHHHHHHHTT-----S--TTS-HHHHHHHHHHHHHHHHHHHHHHCT-S CS
        Cep3 112 elyegflkttitqlkkanfmanpdirliQiyliLsnTsflfeensladslllqclhvaKlfkiddfkplvedsaalrlskltleklwyrlcilDYlqsg 210
                  l+++ + +++  l++ +f+++ d+r +Q+  iL     ++ +  l+ +l+   +++a ++ +d+  p+v+ ++   + +++ +++w+ l i+ +lq  
  KKY21923.1  23 LLIQNWYDAALFFLHQGDFLRKHDMRSVQVIAILLGLFKNVGDFGLQPTLMAAGIRIAQCLGMDKEPPTVSTDP---IDQEVSRRIWWTLIICEWLQR- 117
                 577888999999**********************99988999999*************************9887...5779999************95. PP

                 T CS
        Cep3 211 p 211
                 p
  KKY21923.1 118 P 118
                 4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2253.59
//
Query:       KKY21924.1  [L=312]
Description: putative lrp16 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-40  137.8   0.5      3e-40  136.9   0.5    1.4  1  Macro     Macro domain


Domain annotation for each model (and alignments):
>> Macro  Macro domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.9   0.5   1.7e-44     3e-40       1     117 [.      57     167 ..      57     168 .. 0.98

  Alignments for each domain:
  == domain 1  score: 136.9 bits;  conditional E-value: 1.7e-44
                 EEEEETTSS-CSHHHHHHHHHHHHHHHHHHHHHHHHHHS--TTSEEEEE-TTSSSSEEEEEESE-TTTSTSTTHHHHHHHHHHHHHHHHHHTT-SEEEE CS
       Macro   1 VnAaNsrllggggvagaihraagkalkeeckelekkqggcllGeavvtpaynlpakyvihtvgplftsskskeeeellakayknalelaeekgiksvaf 99 
                 VnAaN++llggggv+gaihraag  l+eec++l    +gc++Gea++t+++nlpa++vihtvgp+++  +  ++e ll+ +yk +l+la e+g+ks+af
  KKY21924.1  57 VNAANTSLLGGGGVDGAIHRAAGRGLLEECRAL----NGCKTGEAKITKGHNLPARHVIHTVGPVYS--NASKSEPLLRGCYKTSLQLAVENGCKSIAF 149
                 9********************************....89***************************7..8999999*********************** PP

                 E-TTSSTTSBTHHHHHHH CS
       Macro 100 PaistGifgvpweeaarv 117
                  aistG++g+p   aa++
  KKY21924.1 150 SAISTGVYGYPSGAAAEA 167
                 ************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 1985.32
//
Query:       KKY21925.1  [L=305]
Description: putative mitochondrial inner membrane protease subunit 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-08   32.2   1.2    5.8e-07   29.4   1.2    2.1  1  Peptidase_S24  Peptidase S24-like
  ------ inclusion threshold ------
      0.061   13.1   0.1         11    5.8   0.0    2.8  2  Peptidase_S26  Signal peptidase, peptidase S26


Domain annotation for each model (and alignments):
>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   1.2   6.5e-11   5.8e-07       1      65 [.     130     208 ..     130     212 .. 0.76

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 6.5e-11
                    EXXSSTTCCTXXTT.........XEEEEE....CTS---TTSEEEEEETTCE.-EEEEEEEEETTEEEEE.SSTT.STEE CS
  Peptidase_S24   1 rvpGdSMeptlldG.........dlilVd....kfsepkrGdivvfrlpgee.eayiKrviglpgdrvllasnne.yppl 65 
                    +v+G SM ptl+ +         dl+lV+    + + ++rGd+vvfr p ++ ++  Krv+  +gd v  ++ ++  +pl
     KKY21925.1 130 TVKGPSMSPTLNRDfkdaepyteDLVLVNlwkaRVRGINRGDVVVFRSPQNPeKVVTKRVVAVEGDMVY-PLPPYpTDPL 208
                    699999988887533333333339999998866666****************99************998.4444435555 PP

>> Peptidase_S26  Signal peptidase, peptidase S26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1    0.0044        39      22      62 ..     167     195 ..     153     201 .. 0.63
   2 ?    5.8   0.0    0.0012        11     100     136 ..     210     248 ..     198     250 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0044
  Peptidase_S26  22 levgdlvlvepPeelaalaaergylprgvpllKrVlalagq 62 
                    +++gd+v++++P++  +              +KrV+a++g+
     KKY21925.1 167 INRGDVVVFRSPQNPEKV------------VTKRVVAVEGD 195
                    677888888888754444............45555555555 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0012
  Peptidase_S26 100 laegelflls..kevadSfDsRYfGpvpassvigvarpv 136
                    ++ g++++ +  +++++S Ds  +G +pa  ++g+++ v
     KKY21925.1 210 IQWGQIWVEGdnEDKSKSIDSNTYGSIPAGLIVGKVVGV 248
                    666777776511567899***************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2100.47
//
Query:       KKY21926.1  [L=909]
Description: putative ph domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-33  114.6   0.3    3.9e-32  111.5   0.3    2.3  1  PH_4      Pleckstrin homology domain
    3.4e-05   24.3   0.1        1.9    9.1   0.0    4.0  4  PH        PH domain
  ------ inclusion threshold ------
       0.39   11.6   2.7        1.7    9.6   2.7    2.1  1  Alb1      Alb1


Domain annotation for each model (and alignments):
>> PH_4  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   0.3   6.5e-36   3.9e-32      63     182 ..     790     893 ..     786     894 .. 0.91

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 6.5e-36
        PH_4  63 GkltelDLlernktfdeanpgehalprvy.aDgwkSseeessrcfvlwfgkkralskakkskkkekekkakekasekaeneeknpkllksvsrlgvsgk 160
                 G +te+DLl++n+tfd+++pg halprvy +Dgw+S +e++++cfv+w+g k++l+++ ++                +e+  k++  l++vsrlgv+g+
  KKY21926.1 790 GLVTEEDLLYQNQTFDSNRPGVHALPRVYlDDGWTSRDEDTMTCFVIWHGLKKSLFRTGED----------------TEGGGKRQ-RLRQVSRLGVTGR 871
                 899*****************************************************88774................23455555.6899********* PP

        PH_4 161 sivfmarsrqerdlWvlaiaaE 182
                 s+vf++rsr+erd+Wv++i ++
  KKY21926.1 872 SMVFKCRSRAERDHWVMNIGMD 893
                 ******************9776 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.73   4.4e+03      17      36 ..     287     313 ..     266     344 .. 0.70
   2 ?    4.0   0.0     0.012        71       3      36 ..     529     569 ..     528     603 .. 0.77
   3 !    9.1   0.0   0.00031       1.9      60     103 ..     690     732 ..     668     734 .. 0.83
   4 !    5.7   0.0    0.0034        21      64     100 ..     828     890 ..     799     894 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.73
                 SEEEEEEEEETTE.......EEEESST CS
          PH  17 swkkrwfvLkdse.......llyyknd 36 
                 +w+++ +v++++        l +yk++
  KKY21926.1 287 KWREYMVVVRQNHrddsdyrLQFYKSR 313
                 788777777766667777777777776 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.012
                 EEEEEEEETSSSSC.......SEEEEEEEEETTEEEEESST CS
          PH   3 keGwLlkkgsgkkk.......swkkrwfvLkdsellyyknd 36 
                 +eG+L++ +s+k+         +k+ +f+ +++ l++++++
  KKY21926.1 529 IEGFLVRLTSQKGVhqrlgkmFFKRLYFTTQNQFLVFCRPS 569
                 6999999999887688888877777888888777****999 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00031
                 C..TTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHHHHHHH CS
          PH  60 a..tedpkrkfcfelriverngsrtyllqasseeerkeWikaiqsa 103
                 +  t++ + +  fe++++  ng  ++ lqa +e  + eW+k ++++
  KKY21926.1 690 DgtTSQIDDDRIFEIVLD--NG-LVIRLQAYNEVTKMEWMKRLRQL 732
                 25477899999*******..99.9*******************987 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0034
                 SSSTSEEEE............................EESTSSS..TEEEEEEESSHHHHHHHHHHH CS
          PH  64 pkrkfcfel............................riverng..srtyllqasseeerkeWikai 100
                 +++  cf++                            r     g   r+ ++++ s  er  W+  i
  KKY21926.1 828 EDTMTCFVIwhglkkslfrtgedtegggkrqrlrqvsR----LGvtGRSMVFKCRSRAERDHWVMNI 890
                 55556666666666666666666666666664432221....22334*****************988 PP

>> Alb1  Alb1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.7   0.00028       1.7      21      98 ..     165     246 ..     137     251 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00028
        Alb1  21 kslprpektdrertavlnealsagisk..kkkkkkklskklrlrqekgleraeavt...erlekKieksisrakyvqeRkagw 98 
                 +sl + +k++++r+++ + ++++  +   +   +++++  +r r   g+  ae++    +r ++Ki+++ +ra  vq R+ + 
  KKY21926.1 165 ASLIS-HKDKDARPTISKHSQQSLRQHepSPLPEGSVKTVARERTGTGVRFAENIAergDRVKGKISRAQQRASSVQLRRNTL 246
                 33333.56666688877777555555533334499999999999999*********99999*****************88765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (909 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 5760.25
//
Query:       KKY21927.1  [L=234]
Description: putative glycolipid transfer protein het-c2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-46  157.1   0.0    5.4e-46  156.6   0.0    1.2  1  GLTP           Glycolipid transfer protein (GLTP)
  ------ inclusion threshold ------
       0.09   12.1   0.0       0.13   11.5   0.0    1.2  1  EutC           Ethanolamine ammonia-lyase light chain (EutC)
       0.12   12.6   0.1        1.2    9.4   0.0    2.3  2  T3SS_needle_F  Type III secretion needle MxiH, YscF, SsaG, Ep


Domain annotation for each model (and alignments):
>> GLTP  Glycolipid transfer protein (GLTP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.6   0.0     9e-50   5.4e-46       1     148 [.      58     196 ..      58     197 .. 0.97

  Alignments for each domain:
  == domain 1  score: 156.6 bits;  conditional E-value: 9e-50
                 -BHHHHHHHHHHHHHHHHHT-G.GGGGHHHHTHHHHHHHHHHTT....T-SBHHHHHHHHHHTT-TT..STT-HHHHHHHHHHHHHHHHHHHHHHH... CS
        GLTP   1 veteeFleacrelvklfdllGs.afsfvksDvegniekleeaykknpeeystleslveaEkeeglakkkkkesatrallwLkRgLeflaeflekllkdp 98 
                 ++t +Flea+++l++lfdllGs af++vk+D+ gni+k++++y++ p++++tl++lv +E+++     + k++a+++l+wL RgL+f+a++l++++++p
  KKY21927.1  58 IDTLSFLEAAESLTTLFDLLGSvAFTPVKNDMLGNIKKIRDRYLAAPDQSQTLQALVVNEIKS-----G-KHTAAEGLVWLVRGLDFTAQALKQNISNP 150
                 7899********************************************************955.....3.789************************** PP

                 .HTB-...HHHHHHHHHHHTGGGS-HHHHHHHHHHGGG--BHHHHHHHTT CS
        GLTP  99 kessreelselatkAYektLakyHgwlvrkaaklamkalPsrkdflkklg 148
                 +    eels++++ AY+ tLa++H++lv++++++am+a P+rkdf+ kl 
  KKY21927.1 151 T----EELSTSFKGAYKGTLAPHHSFLVKPVFSAAMSATPYRKDFYLKLV 196
                 *....9****************************************9985 PP

>> EutC  Ethanolamine ammonia-lyase light chain (EutC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.2e-05      0.13      70     132 ..      97     161 ..      82     175 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.2e-05
                 HHHHTT-HHHHTSB-HHHHHHHHHHS-SS-SEEEEEE-TT..-HHHHHTTHHHHHHHHHHHHHTT CS
        EutC  70 reeyLrrPdlGrklseesleklkekaeeeadvaivvaDGL..saeAveenaaelleallealkea 132
                 r+ yL+ Pd  ++l++  ++++k+ +++ a+  + ++ GL   a+A+++n+ + +e+l +++k a
  KKY21927.1  97 RDRYLAAPDQSQTLQALVVNEIKSGKHTAAEGLVWLVRGLdfTAQALKQNISNPTEELSTSFKGA 161
                 899************************************9556999********99999988764 PP

>> T3SS_needle_F  Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.16   9.3e+02      23      34 ..     140     151 ..     135     161 .. 0.72
   2 ?    9.4   0.0    0.0002       1.2      30      62 ..     196     228 ..     183     232 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.16
                    HHHHHHSTTXHH CS
  T3SS_needle_F  23 lealkadpsdPa 34 
                    ++alk+++s+P+
     KKY21927.1 140 AQALKQNISNPT 151
                    467777777775 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0002
                    TTXHHHHHHHHHHHHCHHHHHCHHHHHHHHHHH CS
  T3SS_needle_F  30 psdPaaLakvQfklqqYsvfinaqStavKaikD 62 
                    +s+P++  kvQ +l ++ + +  q ++ K+++ 
     KKY21927.1 196 VSNPTDVPKVQDALKEWLAALEQQVAILKTFQQ 228
                    69***************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1535.68
//
Query:       KKY21928.1  [L=507]
Description: putative sulfate transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-56  190.5   4.5    7.5e-56  189.5   2.4    1.9  2  Sulfate_transp  Sulfate permease family
    2.5e-16   59.3   0.0      5e-16   58.4   0.0    1.5  1  STAS            STAS domain
     0.0039   17.6   6.0     0.0039   17.6   6.0    2.7  3  MFS_MOT1        Molybdate transporter of MFS superfamily
  ------ inclusion threshold ------
       0.03   14.7   0.0      0.088   13.2   0.0    1.9  1  STAS_2          STAS domain


Domain annotation for each model (and alignments):
>> Sulfate_transp  Sulfate permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.5   2.4   1.7e-59   7.5e-56      90     365 ..       1     292 [.       1     309 [. 0.91
   2 ?    1.0   0.0      0.03   1.4e+02     189     241 ..     310     365 ..     295     374 .. 0.75

  Alignments for each domain:
  == domain 1  score: 189.5 bits;  conditional E-value: 1.7e-59
  Sulfate_transp  90 laGviqvllGllRLgflveflseavlsGfiaGaaivillsqikvllgle......rvskkeslvsvlsslftnlekvnlakvvlgllllvvLlvt 178
                     +aG+i +++Gl RLgfl ++ls++ l+Gfi+++++vil+ q+   lgl+         +++s v  l+ l++n+ + + ++++++l  +++++v 
      KKY21928.1   1 MAGAIIFIAGLTRLGFLDSVLSKPFLRGFISAIGFVILVDQLIPELGLSdlekktDGVEHGSSVDKLVFLVKNIGNSHGLTAAVSLGSFAIITVF 95 
                     79**********************************************977654334567899999***************************** PP

  Sulfate_transp 179 kellkklkkl..lvipapaelvavivatlvsaifelkreagvkivgeipsg.lpelslp....kvdwsllsallpdalaialvglleaiavsksl 266
                     +el+k+l+ +  +++ +p  +++v+++ ++++ f + +++g  i+g+++s   +++ ++      + +++ + l ++++ial+g++e+  ++ksl
      KKY21928.1  96 RELKKRLQPRypSMAYFPDRFIIVVLSAVFTWKF-SWDKKGLEILGNVNSTsGRPFPFHwpfqTPHIKHIDSALGTSFIIALLGFFESSVAAKSL 189
                     *******999999*********************.8999*********98655555555557677999*******************88888888 PP

  Sulfate_transp 267 dk....kkgykvdsnkELvAlGfsNilsslfgglpatgafsrsavnikaGaktqlsglvsalvvllvllvltplleyiPkavLaaiiivagkglL 357
                     ++     +g+++++n+ELvAlG++N++++ f +lpa+g++ rs vn+++G+ t++s++++++++ll +l++ p+++ +Pk vL+a++ v++++l+
      KKY21928.1 190 GEgtheLQGMSLSANRELVALGVANLVGGCFMALPAFGGYGRSKVNASTGGTTPMSSILLSVITLLSVLFIVPYFYWLPKGVLSAMVSVVAWSLI 284
                     76433367899**********************************************************************************99 PP

  Sulfate_transp 358 velkelkk 365
                     +e ++ +k
      KKY21928.1 285 EECPHDIK 292
                     99887765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.03
  Sulfate_transp 189 lvipapaelva.vivatlvsaif..elkreagvkivgeipsglpelslpkvdwsll 241
                     +++ +++ l++ + +++ +s+++  +++++a ++i+g++p   ++++  +++++ l
      KKY21928.1 310 FLATIFYSLTLgIALGIGLSILIliRHATRARIQILGKVPGTTDTFENAEIHPQSL 365
                     556666666543556676666667799999**********9999998887777665 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   1.1e-19     5e-16       4     117 .]     365     489 ..     363     489 .. 0.91

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 1.1e-19
                 EEECTTEEEEEEEEEESHHHHHHHHHHHHHHHHCCC...............-SEEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES--HH...H CS
        STAS   4 aeeiegililrldgpidfanaesfkeklkravgeeperve.......kkeslkslildlsavsfiDssGvraLkeilkelkrigvevvlvnikpe...v 92 
                 +e+ eg+li ++++p++fan  ++k +l+r + +++ + +        +e  +++i+d  +v+ iD sG ++L ei++ + ++gv+v+++ ++ +   v
  KKY21928.1 365 LEFVEGCLICKIPEPLTFANTAELKGRLRRLELYGTNAAHpalprvrRPEHNRNIIFDVHGVTGIDGSGTQVLLEIVQGYIQKGVRVIFCRLSRRqnmV 463
                 68899******************************99888*******88888*************************************9987653338 PP

                 HHHHHHTTCGGCC...SEEESSHHHH CS
        STAS  93 reklektgffdeve.eeklfltvhdA 117
                  +++e++g+ + v+ e+ + ++v++A
  KKY21928.1 464 YRNFERSGLVETVGgEKYFVSSVEEA 489
                 888**********9777777777776 PP

>> MFS_MOT1  Molybdate transporter of MFS superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.8      0.24   1.1e+03      74     109 ..       1      35 [.       1      37 [. 0.84
   2 !   17.6   6.0   8.7e-07    0.0039      25     111 .]     190     283 ..     168     283 .. 0.75
   3 ?   -2.8   0.4       1.8   8.1e+03      69      79 ..     310     320 ..     302     345 .. 0.50

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.24
    MFS_MOT1  74 llGlvllllgltgllerllrliPksvlgglllgaGl 109
                 + G+++++ glt+ l  l +++ k++l+g + + G+
  KKY21928.1   1 MAGAIIFIAGLTR-LGFLDSVLSKPFLRGFISAIGF 35 
                 579999999*998.7888889999999999888876 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 8.7e-07
    MFS_MOT1  25 a.........slsltalllsvGlmnlltglfggvPmchgAgglaaqyrfgartgaagillGlvllllgltgllerllrliPksvlgglllgaGleL 111
                           sls+++ l+ +G++nl++g f+++P   g g    +   g  t ++ ill+++ ll  l+  ++    ++Pk vl +++ +++++L
  KKY21928.1 190 GegthelqgmSLSANRELVALGVANLVGGCFMALPAFGGYGRSKVNASTGGTTPMSSILLSVITLLSVLF--IVPYFYWLPKGVLSAMVSVVAWSL 283
                 35666666778899999**************999876544444444445888888888888777655444..799999**************9987 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.8
    MFS_MOT1  69 gaagillGlvl 79 
                   a i+++l+l
  KKY21928.1 310 FLATIFYSLTL 320
                 33333333332 PP

>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     2e-05     0.088      11      69 ..     384     459 ..     375     472 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2e-05
      STAS_2  11 taaelreqlleal.................aag.aevvvDlsgvervDsaalalLlalartarargrrlvlrglppa 69 
                 + ael+ +l+++                    + + +  D++gv+ +D ++ ++Ll+ +    ++g r+ + +l+++
  KKY21928.1 384 NTAELKGRLRRLElygtnaahpalprvrrpE-HnRNIIFDVHGVTGIDGSGTQVLLEIVQGYIQKGVRVIFCRLSRR 459
                 5555555555533455555555556666533.2479999******************99999999999888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 3274.91
//
Query:       KKY21929.1  [L=309]
Description: putative eukaryotic translation initiation factor 2 alpha subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.3e-36  123.2   0.0    9.2e-36  122.5   0.0    1.4  1  EIF_2_alpha  Eukaryotic translation initiation factor 2 alpha
    1.1e-13   51.3   0.5    2.5e-13   50.2   0.5    1.6  1  S1           S1 RNA binding domain


Domain annotation for each model (and alignments):
>> EIF_2_alpha  Eukaryotic translation initiation factor 2 alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.5   0.0     1e-39   9.2e-36       1     116 []     126     237 ..     126     237 .. 0.95

  Alignments for each domain:
  == domain 1  score: 122.5 bits;  conditional E-value: 1e-39
                  HHHCTHHHHTTTTS-HHHHHHHHHSTTHHHHHTTS-TT.THHHHHHCTHHHHHHT-EEEEEEEEEEE-STTHHHHHHHHHHHHST.S..TTSSSEEEE CS
  EIF_2_alpha   1 lyeevgwklyekyghaydaFklaitdeevldkleipee.veeaLveiikkklkpqkvkiradieltcftkdGveaIkeaLkageeasneeeveeeeev 97 
                  ly+ ++w+l+++ygha daFk+ait++ev++++++p+e v+++Lv +i+kkl+p++ k+rad+++ cf+++G++a+keaL+++e++++++     ++v
   KKY21929.1 126 LYQAIAWPLNKRYGHANDAFKIAITNPEVWNDISFPNEvVKDELVLYISKKLTPHPTKVRADVDVFCFGYEGIDAVKEALRTAEAKNTAD-----TQV 218
                  7**********************************9662689***************************************888866666.....9** PP

                  EEEESSSSEEEEEEEES.. CS
  EIF_2_alpha  98 kikliapPeYvltvetldk 116
                  k+kl++pP+Yvlt++tldk
   KKY21929.1 219 KVKLVSPPHYVLTSQTLDK 237
                  *****************97 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.5   2.7e-17   2.5e-13       2      75 .]      14      88 ..      13      88 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 2.7e-17
                STTTCEEEEEEEEEETTEEEEEET..TTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1  2 pekgevveGeVtsvtkgGafVelg..ngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75
                pe++  v+ +V+++ ++Ga+V l+   +++g++ +selsr+ r++++ + +++G    v+vl+vdk++++i+ls++
  KKY21929.1 14 PEIDSYVMVNVKQIAEMGAYVKLLeyDNIDGMILLSELSRR-RIRSIQKLIRIGRNEVVVVLRVDKEKGYIDLSKR 88
                789999******************999**************.********************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2163.87
//
Query:       KKY21930.1  [L=603]
Description: putative vacuolar cation channel [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.3e-08   31.5  19.7    6.3e-07   28.4  19.7    2.0  1  PKD_channel  Polycystin cation channel
    0.00015   21.1  24.8     0.0036   16.5  24.8    2.2  1  Ion_trans    Ion transport protein


Domain annotation for each model (and alignments):
>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4  19.7     7e-11   6.3e-07     213     426 .]     239     438 ..     232     438 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 7e-11
                  HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSS----HHHHHHHHHHHHHHHHHHHHHHH CS
  PKD_channel 213 lievvfvvfvlyfvveeilkirkerasylrsvwnlldlaivvlsvvlivlailrevlakkllkkveaekeefldFrevaqldqllriilavlvflttl 310
                  ++e v++v+ + f+ +ei k++k ++ y   +wn  +  ++ l +++ +l+++              ++++  dF+      +l     a+   + ++
   KKY21930.1 239 IVEGVLYVMTFSFICDEIAKFWKIGRYY-FGFWNAFNNTLYSLLTISFILRMIALGASS------DPDNQRRSDFN------KLSYRFFAFSAPMFWM 323
                  468899******************6555.58********99998888877665443322......22333334554......4555678888899999 PP

                  GGGGG------------------------HHHHHHHHHHHHHHHHHHSS.SS-STTSSHHHHHHHHHHHHTT---HHHHHHH-TTHHHHHHHHHHHHH CS
  PKD_channel 311 kllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllfG.tqasnfsnlvksiltlfrlilgdfqytelesgnrvLGpllllalvflv 407
                  +ll +l  ++ +  +  +l+  +k+ l f+ +++++++ + q+ + l +  +a+n   ++  ++t    il++ ++  +++  + +G++l+ ++ f+v
   KKY21930.1 324 RLLLYLDTVRFFGAMLVVLKVMMKESLIFFALLIVVIIGFLQAFIGLDSvDKAENVTGFILQAMTN--SILQSPDFDGFDNFSQPFGIILYYIFTFVV 419
                  999999888888888888988888888887778888888888877665526788888888776666..7***************************** PP

                  HHHHHHHHHHHHHT-XXXX CS
  PKD_channel 408 ifillnlflaiindsyeev 426
                  ++illn+++a+ n++ye v
   KKY21930.1 420 MVILLNVLIALYNSAYEDV 438
                  ****************976 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5  24.8   4.1e-07    0.0036      32     241 ..     235     439 ..     220     443 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.1e-07
                 C..HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH...........HHHH............HHHHHHHHHHHH.GGG CS
   Ion_trans  32 k..tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl...........vlse............esllllsvlrlf.rvl 104
                    +i+e + +v t  f+ + + k++  g      Y   +wn +  +  ++  +s+           +                 ++++s++ ++ r+l
  KKY21930.1 235 GdlDIVEGVLYVMTFSFICDEIAKFWKIGR-----YYFGFWNAFNNTLYSLLTISFilrmialgassD--PdnqrrsdfnklsYRFFAFSAPMFWmRLL 326
                 1348999999****************9666.....555558888888888888888555566665551..055667788888999************** PP

                 GGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHH CS
   Ion_trans 105 rllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmttegwgdilyatl 203
                   l +++ ++ + +    l+ ++k+ l ++ ll+vv++ f  +++ l                       ++d+  +   ++++ mt      il+ + 
  KKY21930.1 327 LYLDTVRFFGAMLV---VLKVMMKESLIFFALLIVVIIGFLQAFIGLD----------------------SVDKAENVTGFILQAMTN----SILQSPD 396
                 ***********666...7889999999999999999999999998888......................333333333333333332....2222222 PP

                 HHS.....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 204 dek.....skvaliyfvifiilgsflllNlliaviadnfqelt 241
                         + +++i++ if ++++++llN+lia+ +++++++t
  KKY21930.1 397 FDGfdnfsQPFGIILYYIFTFVVMVILLNVLIALYNSAYEDVT 439
                 22223334566788*************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1026  (0.0572257); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.50
# Mc/sec: 3654.85
//
Query:       KKY21931.1  [L=1332]
Description: putative cation transporting [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-18   65.2   0.1      2e-17   63.3   0.0    2.0  2  E1-E2_ATPase     E1-E2 ATPase
    7.6e-16   59.0   1.9    4.4e-09   36.9   0.4    3.4  3  Hydrolase        haloacid dehalogenase-like hydrolase
     0.0056   16.3   0.0      0.014   15.1   0.0    1.7  1  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
     0.0064   16.6   0.2       0.57   10.3   0.0    2.9  3  Cation_ATPase    Cation transport ATPase (P-type)
     0.0081   15.9   0.1      0.028   14.2   0.1    1.9  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.023   15.5   1.0      0.023   15.5   1.0    2.3  2  KMP11            Kinetoplastid membrane protein 11


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.83   2.5e+03      99     140 ..       4      45 ..       3      68 .. 0.79
   2 !   63.3   0.0   6.7e-21     2e-17       6     180 ..     260     480 ..     255     481 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.83
                   TTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STT CS
  E1-E2_ATPase  99 rlveeakskktplqkkldklgkvlvpvvlliallvflialll 140
                   rlv +a+ + ++l   l+ l+ ++++  ++i  ++f+i ++ 
    KKY21931.1   4 RLVDDAQVQSASLHSPLSLLFHWYILPFTIIWPIFFAIYISE 45 
                   78999999999999999******9999999999999998764 PP

  == domain 2  score: 63.3 bits;  conditional E-value: 6.7e-21
                   EEEEE-TTS-EEEEGGG--TTSEEEEET...T-B--SEEEEEEE-SEEE-TTTS---S-EE-.................G-TTEE-TT-EEEE.... CS
  E1-E2_ATPase   6 takvirdgteeeidakelvpGDivllka...gdrvpaDgrivegsaevdesaLTGEslpvek.................ekgdmvfsGtvvvs.... 78 
                      v+rd+++++i+++el pGD+  ++     + v++D+++veg+a v+e++L GEs+p  k                 +k++ + +Gt v++    
    KKY21931.1 260 DIYVYRDNKWQQIKSDELLPGDLASVERtkeDSGVACDMVLVEGTAIVNEAMLSGESTPLLKdslqlrpgnvpidpeglDKNTFLWGGTKVLQvtha 356
                   56799******************99875332778*********************************************9999999*****99999* PP

                   ......................-EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHH CS
  E1-E2_ATPase  79 ......................geakavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallrala 153
                                           a avV++tg +t  g ++r +  a+++ +    ++  ++ +l +++l+++ +v+   + + ++  + ll  + 
    KKY21931.1 357 ttgddvtdapppvtsgvpsppdNGAMAVVVKTGFETNQGSLVRTMIFATERVSADNAEALYFILFLLIFALAASWYVWQEGVEKDRKRSKLLLDCVL 453
                   *********************98888**********************8877777777777777777777777777777666666666599999*** PP

                   HHHHHS-TTHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase 154 llvaaiPcaLplavplalalgarrlak 180
                   ++++++P+ Lp+ ++la+ +++++l+k
    KKY21931.1 454 IITSVVPPELPMELSLAVNTSLAALSK 480
                   *************99999988888876 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.4   1.5e-12   4.4e-09       2     156 ..     498     762 ..     497     781 .. 0.74
   2 !   19.2   0.0   3.9e-07    0.0012     151     209 ..     819     876 ..     802     877 .. 0.75
   3 ?   -2.3   0.1       1.5   4.4e+03     126     155 ..     970     999 ..     957    1014 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 1.5e-12
                 SEEEEESBTTTBCHHHHHHHHHHHH............................CHHHHHHHHHH..........................HHCHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx............................xxxxxxxxxxx..........................xxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsa............................alalaaaletg..........................sehpigkal 46 
                 +  +fDk+GTLt ge  v+d i+ +                            +l la a +++                          +++   k  
  KKY21931.1 498 DIACFDKTGTLT-GEDLVVDGIAGLslgqkgtsvekdgahtdlkkvgevghetTLVLATAHALVkldegdivgdpmekatldslgwtlgrNDTLTSK-- 593
                 6789********.**9999*99999999999999999995555555555443333333333333444444444444444444444445544444444.. PP

                 HHHHHHHHHHHHHHHHETTTE.....................................................HHHHTHHHHHHHH..HCHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx.....................................................xxxxxxxxxxxxx..xxxxxxxxxx RF
   Hydrolase  47 vaaakarsgaltgfatfigrg.....................................................ayaigkpewltal..dippdlgaai 90 
                                                                                           +  +g pe ++ +  d+pp ++++ 
  KKY21931.1 594 --------------------SpssakankdpapasdivqikrrfqfssalkrqssvanvlsidkrtgkkirstfVGVKGAPETIRTMlvDVPPYYEETF 672
                 ....................1444444444444444444444459999999999999999999999999999999999999999999999999999999 PP

                 HHHHHHCHHHHHH....................TTHHHHHHHHH......HTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT CS
                 xxxxxxxxxxxxx....................xxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  91 gsaqsqgrtvall....................qaralavftia......dplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG 156
                     + g  v  l                      ++ a++t+a       p  +k++a +av+ L++   + v++tgdnp ta ++a+q+ 
  KKY21931.1 673 KYFTRNGARVLALgykyisteaeigqkrindlkREEVEAELTFAgflvlqTP--LKDDAIKAVQMLNESSHRCVMITGDNPLTAVHVARQVE 762
                 9999999999999****************99994455555555555552266..************************************99 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 3.9e-07
                 HHHHTTGGGESEEEEHHCES....STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 151 aanqlGddyfdaviasdiet....vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaA 209
                 +a+  G      +  s+i       a +sp++k++++  L+  +  ++m GDg nD+ al++A
  KKY21931.1 819 LAKFTG-----QKALSTILRhtwvYARVSPKQKEEILLGLKDAGYTTLMCGDGTNDVGALKQA 876
                 555566.....22222222234679****************99999****************9 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.5
                 HHHHHHHTTEEEEEEESSEHHHHH.HHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
   Hydrolase 126 avasLkaagievvlltgdnpetae.raanql 155
                 +++++ + g +   +t+dn ++++ raa ++
  KKY21931.1 970 TIETITSPGAQALQATNDNLTPQQkRAA-EA 999
                 6777778888888899999999995554.44 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.7e-06     0.014      14      68 ..     164     216 ..     155     217 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.7e-06
  Cation_ATPase_N  14 etdlenGLtq.aeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalv 68 
                      +   ++GLt+ ae+ ++++ yG+N++ + + +++++++ ++   p+  + ++++ +
       KKY21931.1 164 Q--KSQGLTTkAEIDRLQEHYGSNTF-DIPVPTFLELFQEHAVAPFFVFQIFCVGL 216
                      4..589**665***************.999999***99999999999998888765 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00019      0.57      15      84 ..     563     657 ..     547     660 .. 0.76
   2 ?   -2.5   0.2       1.9   5.7e+03      10      48 ..     964    1002 ..     956    1007 .. 0.81
   3 ?    2.6   0.0     0.049   1.5e+02      44      66 ..    1231    1253 ..    1174    1263 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00019
  Cation_ATPase  15 devkllGnktEsALlvlaekl.................gldteelreetkkvqeipFnssrKrmsvvlkle........pekkvrlyvKGApeii 84 
                    de +++G++ E A l                       ++d+  + +  ++ + ++F+s  Kr+s+v +          +  +  + vKGApe i
     KKY21931.1 563 DEGDIVGDPMEKATLDSLGWTlgrndtltskspssakaNKDPAPASDIVQIKRRFQFSSALKRQSSVANVLsidkrtgkKIRSTFVGVKGAPETI 657
                    55667788888887765555546666666665555555666666666699999*************998778999977666677889******98 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.9
  Cation_ATPase   10 ensekdevkllGnktEsALlvlaeklgldteelreetkk 48  
                      n+++++ +++ ++  +AL+   ++l+ +++++ e  kk
     KKY21931.1  964 SNNPNGTIETITSPGAQALQATNDNLTPQQKRAAEAQKK 1002
                     5888899999999999****9999998888888777776 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.049
  Cation_ATPase   44 eetkkvqeipFnssrKrmsvvlk 66  
                     e ++k++ +pF+s+ K  +++l 
     KKY21931.1 1231 ELNEKLRLVPFTSEFKTTLTLLM 1253
                     4589************9999875 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.8   5.4e+03      18      54 ..     727     763 ..     723     767 .. 0.83
   2 !   14.2   0.1   9.4e-06     0.028     206     242 ..     860     897 ..     853     904 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.8
                  HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCC CS
  Hydrolase_3  18 ektkeaikklkekgikvviATGRslravlpvleelgl 54 
                  + +++a++ l e  +  v  TG ++ ++ +v++++++
   KKY21931.1 727 DDAIKAVQMLNESSHRCVMITGDNPLTAVHVARQVEI 763
                  6678899999999999999999999999998888775 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 9.4e-06
                  EEEEESSGGGHHHHHHSSEEEEETTS-.HHHHHHSSEE CS
  Hydrolase_3 206 viafGDgeNDieMLeaaglgvAmgnas.eevkkaAdyv 242
                  ++  GDg ND+  L++a +gvA+ n++ + ++k+A + 
   KKY21931.1 860 TLMCGDGTNDVGALKQAHIGVALLNGTtDDLQKIAEHF 897
                  6788*********************9637889998886 PP

>> KMP11  Kinetoplastid membrane protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.56   1.7e+03      70      86 ..     894     911 ..     886     917 .. 0.58
   2 ?   15.5   1.0   7.8e-06     0.023      27      79 ..    1267    1326 ..    1251    1331 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.56
       KMP11  70 sehfk.akfaelleqqka 86 
                 +ehf+ +k+ el e+q a
  KKY21931.1 894 AEHFRnTKMKELYEKQVA 911
                 566642356666666543 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 7.8e-06
       KMP11   27 nkkffad.kp.deatlsp.....emkehyekfekmikehtekfnkkmrehsehfkakfae 79  
                   k+ffad kp d at  p     e k h e  e+++ke+t  ++k  re+ e f +k a 
  KKY21931.1 1267 LKRFFADfKPkDIATRRPdqlerEEKRHKEEAERLLKEKTVALEKAEREKIEAFESKQAT 1326
                  589999977745577555222227799****************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1060  (0.0591221); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.98u 0.37s 00:00:01.35 Elapsed: 00:00:00.51
# Mc/sec: 7791.27
//
Query:       KKY21932.1  [L=1421]
Description: putative glutaminyl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     1e-101  340.0   0.0   1.4e-101  339.5   0.0    1.2  1  tRNA-synt_1c     tRNA synthetases class I (E and Q), catalyti
    8.6e-32  110.4   0.0    2.5e-31  108.9   0.0    1.8  1  tRNA-synt_1c_C   tRNA synthetases class I (E and Q), anti-cod
      2e-28   98.4   0.1    3.9e-28   97.5   0.1    1.5  1  ADH_N            Alcohol dehydrogenase GroES-like domain
    4.9e-17   62.1   0.0      1e-16   61.1   0.0    1.6  1  ADH_zinc_N       Zinc-binding dehydrogenase
      1e-16   60.4   0.2    2.3e-16   59.3   0.2    1.7  1  Rbsn             Rabenosyn Rab binding domain
    1.7e-05   24.4   0.1    3.7e-05   23.3   0.1    1.5  1  Glu_dehyd_C      Glucose dehydrogenase C-terminus
    0.00031   20.1   1.2    0.00065   19.1   1.2    1.5  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
     0.0014   19.7   0.0     0.0069   17.4   0.0    2.3  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
     0.0034   17.0   0.0      0.006   16.2   0.0    1.3  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
     0.0039   17.8   0.1       0.02   15.6   0.0    2.3  2  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
       0.05   13.5   0.0       0.25   11.2   0.0    2.1  2  Tnp_DNA_bind     Transposase DNA-binding
      0.056   12.8   0.2       0.15   11.4   0.0    1.7  2  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.082   12.3   0.4       0.17   11.2   0.4    1.4  1  PrmA             Ribosomal protein L11 methyltransferase (Prm


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.5   0.0    1e-104  1.4e-101       2     313 ..      94     402 ..      93     403 .. 0.98

  Alignments for each domain:
  == domain 1  score: 339.5 bits;  conditional E-value: 1e-104
                   -EEEE---SSSS-BHHHHHHHHHHHHHHHHTT-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---SSEEEEGGGGHHHHHHHHHHHHHTTSEEEE- CS
  tRNA-synt_1c   2 VrtRfaPePtGyLHiGhakaallnylfAknnnGkfilRieDTdperekeeaeesiledlkwlgikwdekptyqsdrfdelkkyaeeLikkGkAYvce 98 
                   V  Rf+PeP+G+LHiGh+ka+ +n++fA++++G+++lR++DT+pe e+e ++++i +++kwlg+k+ +k+ty+sd+fd+l+++ae+L+ +  AYvc+
    KKY21932.1  94 VFSRFPPEPNGFLHIGHSKAIAINFGFARYHGGDCFLRFDDTNPEAEEEIYFHAIEDMIKWLGFKP-YKITYSSDYFDRLYELAEQLVLDDGAYVCH 189
                   778***************************************************************.****************************** PP

                   STHHHHHHHHCCSS...HSS-TTTTS-HHHHHHHHHHHHHTTHSTTTS-EEEESSBTTSS.GGGSSTEEEEEEESGGGSBTTTBTSTSEEE-HHHHH CS
  tRNA-synt_1c  99 ctkeeleeereeqe...klgskerdrydeenlklfeeemkkgkaegekavvRlkideess.vefrDlvrgriklepqeihdlvivksdiyPtYdfav 191
                   c+ ee++ +r+  +   ++++++r+r++ee+l+ f + m++gk++ ++a +R+k++ e    +++Dl ++r+ l+p   h+++++k++iyPtYdf++
    KKY21932.1 190 CSDEEVKLQRGGPNhgpRYACAHRNRPVEESLAEF-RAMRDGKYRPKEAFLRMKQNIEDGnPQMWDLAAYRVLLKP---HHRTGDKWKIYPTYDFTH 282
                   **********98777889*****************.9******************998877***************...****************** PP

                   HHHHHHTT-SEEEEEGGGGCCHHHHHHHHHHTT-S.-EEEEEE--EEETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB-HHHHHHHHHH CS
  tRNA-synt_1c 192 vidDaleeithvlrteefldntpkyiwllealglevppfiheylrlnlekkklSKRklsllvdekqvkewddlreallnflrrlGwtpekerelftr 288
                   +++D+ e+ith+l+t+efl+++ +y wl++a++++ +p+++ey rln++++  SKRk++ lv+e +v++ dd+r+ +l +lrr+G++p ++ +++++
    KKY21932.1 283 CLVDSFERITHSLCTTEFLQSRVSYEWLCDAVRVY-KPMQREYGRLNVQGTITSKRKIAKLVNEGYVRGYDDPRLYTLVGLRRRGVPPGAILSFVNE 378
                   ***********************************.************************************************************* PP

                   HCCCSSS.EEEEHHHHHHHHHHHHH CS
  tRNA-synt_1c 289 eeliksfdlnresksleafdrkkLe 313
                    +++++  +n+++ ++e  +rk+Le
    KKY21932.1 379 LGVSTAH-TNIQIVRFEQSVRKYLE 402
                   *******.**********9999986 PP

>> tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   0.0   1.8e-34   2.5e-31       2     157 ..     406     583 ..     405     587 .. 0.93

  Alignments for each domain:
  == domain 1  score: 108.9 bits;  conditional E-value: 1.8e-34
  tRNA-synt_1c_C   2 pRymaVldpvkvtienlpegkeeelevplhpknpelgtrkvpfskeiyiereD........akrlkpgeevrLke.lynikveevekde.sgevt 86 
                     pR+m Vldp+ v+i+nlp++++ee+e+p+ pk+p +g++ +pf+k +yi+r+D        ++r++pg+ v L +  y ik+e+++kde +g vt
      KKY21932.1 406 PRLMLVLDPIPVIIDNLPDDYVEEVEMPFAPKDPAMGSHMMPFTKVVYIDRSDfrevdskeFFRMAPGKSVGLLKvPYPIKAESFKKDEaTGLVT 500
                     9*****************9*****************************************************98868****************** PP

  tRNA-synt_1c_C  87 elkleydgesleea..rkkkgiihWvsa....eeaveaevrlYdrLfkeee.de...dfl..lnpdslkvleeglaepalanl 157
                     e++++y++   e+   +k+k+ i+Wv +    e+++++evr+   Lfk+++ d+    f+  +np+s++++ ++++e  l++ 
      KKY21932.1 501 EIHATYEKPAEEGGsfKKPKTYIQWVGKsekhESPINVEVRVTKPLFKSDSpDSvpgGFMndINPNSEEIFPNAVIETGLNEI 583
                     *******9666555899*********998876677999**********99988899988899***************999875 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.1   2.9e-31   3.9e-28       2     109 .]    1095    1207 ..    1094    1207 .. 0.96

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 2.9e-31
                  TEEEEEEEEEEE-HHHHHHHTTS...TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTS..S-S CS
       ADH_N    2 gevlikvkaagiCgsDlhilkgg...kelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvs..ldG 93  
                   +v+i+vk +g+CgsD+h++ +g   ++++ + pl++GHE++G+v++vg++v++lk GdrV++ep i+c  C++C eg++nlC+++ + g+    +G
  KKY21932.1 1095 RDVIIRVKFVGVCGSDVHFWIHGgigQKVSPEKPLVVGHEATGIVDSVGSGVTGLKPGDRVALEPGIPCRACDRCFEGKYNLCPRMIFAGAPpnAHG 1191
                  69******************99889999***************************************************************999*** PP

                  SSBSEEEECGGGEEEE CS
       ADH_N   94 gfaeyvvvpekklvkl 109 
                  ++++ + +p++ ++kl
  KKY21932.1 1192 CLSRFYKLPDSLCYKL 1207
                  ********99999985 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   7.4e-20     1e-16       2     128 ..    1248    1380 ..    1247    1382 .. 0.86

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 7.4e-20
                  HHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTT.ESEEEET...TTC..HHHHHHHHHTT.TSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC CS
  ADH_zinc_N    2 vGlaavqlAkalGa.eviavdsseeklelakklG.adeviny...kea..dlverikeltg.gegvdvvfecvGsgatleaalkllkpgGrlvvvGg 90  
                  vGl+  ++ ka+Ga + i+vd+s+ +le+a+k   ad +  +     +     e +  +t  g g+d+v+e++G+ ++++ a+ +l+ gG +v vG+
  KKY21932.1 1248 VGLLSAAASKAFGAkRAICVDISPARLEYAQKQHiADLTWVPdleA-TaeANAEGLNVATSlGAGPDIVIETSGAASSVNIAIHALRIGGSFVQVGL 1343
                  9*******************************76688877775541.22234444555556699********************************* PP

                  TSSEEEEEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHH CS
  ADH_zinc_N   91 gkgeeefdlrnlllkeksilGsllgslreefkealdll 128 
                  gk +  f++r++  ke+++ G+++++ + +f  a+ ll
  KKY21932.1 1344 GKPNINFPIRRMSEKELHLHGCFRYG-PGDFDLAVGLL 1380
                  888888********************.99998877765 PP

>> Rbsn  Rabenosyn Rab binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.2   1.6e-19   2.3e-16       1      41 [.    1011    1051 ..    1011    1052 .. 0.97

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 1.6e-19
        Rbsn    1 vLeEQkflveemIkqAkkarrfDEvatLeeNLkELqeEidr 41  
                  vLeEQkf+v emI++A+k+r+fDEva+L+ N ++L++Ei +
  KKY21932.1 1011 VLEEQKFFVGEMIADANKRRKFDEVAALQGNFDDLSKEINN 1051
                  8**************************************75 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   2.7e-08   3.7e-05       4     205 ..    1216    1410 ..    1214    1418 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.7e-08
  Glu_dehyd_C    4 gvLvEPisiveKaielaeasrsafewepesalvlGaGslGLLalalleaeerglervyvlg...rrd...rpdptidl..veelGatYvdsretpv 91  
                   gv +EP++++  a+ l+           ++++v+G+G++GLL++a+ +a   g +r  +++   +r    +++  +dl  v +l at    + + +
   KKY21932.1 1216 GVTIEPLAVAVHACRLVGVK------AGSTVVVIGTGTVGLLSAAASKA--FGAKRAICVDispARLeyaQKQHIADLtwVPDLEATAEA-NAEGL 1302
                   56666666666665554332......346899***********887765..799999999954422211122222333338899999765.56677 PP

  Glu_dehyd_C   92 deipeaseemdlvvEaTGsakhafeaiealapnGvaaLlGvpedsevevdggelhrelvleNkalvGsvNanrrhfeaavdtLaalpeslldelvt 187 
                   +  ++    +d+v+E+ G+a  +  ai+al+  G  + +G+ +++ +++ + ++ ++       l G        f+ av  L++ + + l+ +v+
   KKY21932.1 1303 NVATSLGAGPDIVIETSGAASSVNIAIHALRIGGSFVQVGLGKPN-INFPIRRMSEK----ELHLHGCFRYGPGDFDLAVGLLDSKKIE-LSGMVS 1392
                   7778899**********************************9997.56666555543....44567999999999***99988876555.789999 PP

  Glu_dehyd_C  188 kvvdldeleeAfedddet 205 
                   + v++++++eA+e++ + 
   KKY21932.1 1393 SIVPFEKATEAWERTRKG 1410
                   9*******9999987653 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   1.2   4.7e-07   0.00065      22      76 ..    1230    1286 ..    1223    1319 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.7e-07
                   EETCB--.-EEEEESTSHHHHHHHHHHHHTT-EEEE.EESSHHHHHHHHHTTTCECE CS
  AlaDh_PNT_C   22 gvpgvep.akvlviGgGvaGlqAiatakglgakVtv.lDvrparleqleslgakfve 76  
                   ++ gv++ ++v+viG G++Gl ++a++k++gak  + +D++parle+ ++ +   ++
   KKY21932.1 1230 RLVGVKAgSTVVVIGTGTVGLLSAAASKAFGAKRAIcVDISPARLEYAQKQHIADLT 1286
                   555666515799********************866538*********9985544444 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     5e-06    0.0069      16     125 ..    1306    1410 ..    1280    1412 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5e-06
                    HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHHHH..----EE CS
  ADH_zinc_N_2   16 aatggegvDvvldtvggealleaslkvlpggGrlvsig.gpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaalieeGk..lrpvvd 107 
                    +++ g+g D+v++t g ++ +  ++++l+ gG +v++g g+    +++ p ++ +++ ++++  f    + + d ++  + l++++k  l   v+
    KKY21932.1 1306 TSL-GAGPDIVIETSGAASSVNIAIHALRIGGSFVQVGlGK---PNINFPIRRMSEKELHLHGCFR--YG-PGD-FDLAVGLLDSKKieLSGMVS 1392
                    555.789*********88888999999*888*******874...5555555556677899999994..44.667.************556689** PP

                    EEEEGGGHHHHHHHHHSS CS
  ADH_zinc_N_2  108 rvfpleeaaeAhrylesg 125 
                    +  p+e+a eA+++ ++g
    KKY21932.1 1393 SIVPFEKATEAWERTRKG 1410
                    *************98776 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.4e-06     0.006       2      60 ..    1239    1300 ..    1238    1313 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.4e-06
                      EEEEE--STTHHHHHHHHHHCT.SEEEEE-S-HHHHHHHCTTS-S..S--TTHHHHHHHHCH CS
  UDPG_MGDP_dh_N    2 kisviGlGYvGlvtaavlaeig.hevigvDideekvdklnsgkip..iyepgLeelvkkave 60  
                      +++viG+G vGl +aa+  + g +  i+vDi+ ++ +  ++++i      p+Le   ++++e
      KKY21932.1 1239 TVVVIGTGTVGLLSAAASKAFGaKRAICVDISPARLEYAQKQHIAdlTWVPDLEATAEANAE 1300
                      689**************99999789************9999888533456788877777774 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         6   8.2e+03      32      63 ..    1021    1050 ..    1018    1058 .. 0.77
   2 !   15.6   0.0   1.4e-05      0.02       1      42 [.    1240    1282 ..    1240    1309 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 6
                       HHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTT CS
  Methyltransf_25   32 emleaareraeeegl.nvefvqgdaedlpfedg 63  
                       em++ a++r +   + +v  +qg+++dl+ e +
       KKY21932.1 1021 EMIADANKRRK---FdEVAALQGNFDDLSKEIN 1050
                       78888888885...4489999999999987655 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.4e-05
                       EEEET-TT.SHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHH CS
  Methyltransf_25    1 vLdlGcGt.GrltlalakrlgkakvtgvDiseemleaarerae 42  
                       v+ +G+Gt G l++a++k++g+++ ++vDis++ le+a++++ 
       KKY21932.1 1240 VVVIGTGTvGLLSAAASKAFGAKRAICVDISPARLEYAQKQHI 1282
                       567899996777777777789******************9874 PP

>> Tnp_DNA_bind  Transposase DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.8   3.9e+03      20      34 ..     171     185 ..     170     193 .. 0.83
   2 ?   11.2   0.0   0.00018      0.25      16      48 ..     780     811 ..     775     814 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.8
  Tnp_DNA_bind  20 Rlvklaeslaekpga 34 
                   Rl++lae+l  + ga
    KKY21932.1 171 RLYELAEQLVLDDGA 185
                   9********988876 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00018
  Tnp_DNA_bind  16 RltkRlvklaeslaekpgasiPqacqdwaetkA 48 
                   Rl+kRl+kl + l+++p a iPq++ ++ ++++
    KKY21932.1 780 RLEKRLTKLTQ-LLANPPADIPQVTTNKQKAEG 811
                   ********977.999999******999988876 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.7   3.8e+03       3      23 ..     647     667 ..     645     682 .. 0.73
   2 ?   11.4   0.0   0.00011      0.15      35      73 ..    1236    1275 ..    1229    1296 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.7
                   HHHHHHTTHHHHHHHHHTTCC CS
  2-Hacid_dh_C   3 lllallrrlaeadeevregew 23 
                    ll+l+r+l +a++++++++ 
    KKY21932.1 647 TLLQLNRHLDDAHKNLEDERQ 667
                   7899**********9987765 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00011
                    TTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHH CS
  2-Hacid_dh_C   35 sgktvGiiGlGrIGqavakrlkafgm.kviaydrskkkee 73  
                    +g+tv +iG+G +G   a   kafg+ + i++d s+ + e
    KKY21932.1 1236 AGSTVVVIGTGTVGLLSAAASKAFGAkRAICVDISPARLE 1275
                    689***********************66788888877555 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   0.00012      0.17     159     202 ..    1234    1279 ..    1223    1295 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
        PrmA  159 vkegeevlDvGtGS.GiLaiaaak.LgakkvvavDiDevAvkvake 202 
                  vk+g++v+ +GtG+ G+L+ aa+k +gak+++ vDi +  ++ a++
  KKY21932.1 1234 VKAGSTVVVIGTGTvGLLSAAASKaFGAKRAICVDISPARLEYAQK 1279
                  78999********879**99988758************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.48
# Mc/sec: 8972.34
//
Query:       KKY21933.1  [L=411]
Description: putative reduced viability upon starvation protein 167 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-63  212.4   8.7    8.9e-63  212.1   8.7    1.1  1  BAR       BAR domain
    2.2e-15   56.0   0.1    3.9e-15   55.2   0.1    1.4  1  SH3_1     SH3 domain
    1.4e-12   47.3   0.1    2.4e-12   46.5   0.1    1.4  1  SH3_9     Variant SH3 domain
    3.1e-10   39.6   0.1    1.2e-09   37.7   0.0    2.0  2  SH3_2     Variant SH3 domain
  ------ inclusion threshold ------
        0.5    9.6   8.5       0.62    9.2   0.4    2.1  2  TMPIT     TMPIT-like protein
        8.4    6.8   9.6         21    5.5   9.5    1.5  1  CYYR1     Cysteine and tyrosine-rich protein 1
        8.9    6.8  14.6         18    5.8   0.6    2.4  2  APG6_N    Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> BAR  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.1   8.7   3.5e-66   8.9e-63       1     238 [.       6     246 ..       6     247 .. 0.98

  Alignments for each domain:
  == domain 1  score: 212.1 bits;  conditional E-value: 3.5e-66
         BAR   1 lkKafnRasqlleekvgkaekTkLDedFeelerrldvteklieklvkelkeylqanpgarakqivleklkeqplelLaesmieagkelgedss..fg.. 95 
                 ++K + Ra+q+++  ++ ++ Tk D ++ ++err++++ek+++kl++e+k+y++a++g++++qi           +++++++e++k++++++s  ++  
  KKY21933.1   6 MQKGLVRAPQQFKARFNIGDNTK-DAVYIDAERRFQELEKETKKLHDESKKYFEAINGMLNHQI-----------EFSKAIQEIYKPISGRASdpNSyv 92 
                 7899*******************.****************************************...........******************776799 PP

         BAR  96 ........kalekygeavkklaqteeelekrvetnfldplrellekefkeiqkerkklehkrlDyDaakarlkklktkkskkakde...ekaeeelrkA 183
                          a+e+y+++v++l  t++++ +++e++++ p ++ll + +k i+k++ k++hk+lDyD+++a+lkkl++kk+k++kde    kae ++++A
  KKY21933.1  93 qegnpegiRACEEYESIVRDLLATLHPELEMIEQRIIAPADQLL-EVIKVIRKMALKRQHKQLDYDRHRATLKKLQDKKEKTLKDEkalFKAESDVEQA 190
                 ********************************************.****************************************************** PP

         BAR 184 qqkfeesneelkaeLpnllalevefv.nqlqafveaqldfhkqaaqlleqlqqqls 238
                 ++ f+++n++lk+eLp+l+ale+ef+ + +q+f+++ql+ +++++++++ + + ++
  KKY21933.1 191 TADFNYFNDLLKEELPKLFALEAEFIrPLFQSFYYMQLNVFYTLHEKMQAINIGYF 246
                 **************************************************999886 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.1   1.5e-18   3.9e-15       1      47 [.     358     404 ..     358     405 .. 0.96

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 1.5e-18
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSS..SEEEEEETTSTEEEEEE CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksed..gWwkgrlkgtgkeGliP 47 
                 +AlYDYea+ +++Lsf+ GDvi++++++ +  +Ww+g+++  g++G +P
  KKY21933.1 358 TALYDYEAQAEGDLSFTTGDVIEIIHRTANenEWWTGKVN--GRQGQFP 404
                 59**************************9999********..69****9 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.1   9.4e-16   2.4e-12       1      49 []     359     409 ..     359     409 .. 0.94

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 9.4e-16
       SH3_9   1 AlypyepreddeLsLqrGDvitviee..sedgWlegsltGrtGlvPanyve 49 
                 Aly+ye++ +  Ls+ +GDvi +i++   e+ W+ g+ +Gr G +P nyv+
  KKY21933.1 359 ALYDYEAQAEGDLSFTTGDVIEIIHRtaNENEWWTGKVNGRQGQFPGNYVK 409
                 8***********************884448********************7 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.9     5e+03      22      29 ..     137     147 ..     137     156 .. 0.73
   2 !   37.7   0.0   4.7e-13   1.2e-09       4      55 ..     359     409 ..     356     410 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.9
                 EEEEEE..... CS
       SH3_2  22 dvikvls...l 29 
                 +vikv++   l
  KKY21933.1 137 EVIKVIRkmaL 147
                 79999955543 PP

  == domain 2  score: 37.7 bits;  conditional E-value: 4.7e-13
                 ESS-B-SCGCCB--B-TTEEEEEE..EEEECT.TEEEEEECCCEEEEEGCGEE CS
       SH3_2   4 aiedyvgedkseLsfkkGdvikvlslgskdsd.gwwegevgGrvGlfPsslve 55 
                 a+ dy+++ ++ Lsf+ Gdvi ++   ++ ++ +ww g v+Gr+G fP ++v+
  KKY21933.1 359 ALYDYEAQAEGDLSFTTGDVIEII--HRTANEnEWWTGKVNGRQGQFPGNYVK 409
                 5679********************..6666657******************97 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.4   0.00024      0.62       2      66 ..      37     108 ..      36     128 .. 0.76
   2 ?    4.2   3.1    0.0081        21       6      92 ..     116     204 ..     110     211 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00024
       TMPIT   2 eeweelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk.......eeeee 66 
                 ++++eleke+k+l+++ k+y + ++ + ++q ++sk+i++  k ++   s+ +++ ++ +       ee+e+
  KKY21933.1  37 RRFQELEKETKKLHDESKKYFEAINGMLNHQIEFSKAIQEIYKPISGRASDPNSYVQEGNpegiracEEYES 108
                 5689************************************99999888887777776655334444444444 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0081
       TMPIT   6 elekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92 
                 +l+ e++ +e++      +l e+ k + k++ + ++++ ++ + +++lkkl+ +++   ++e+++ + +++++++++ ++  ++ll ++
  KKY21933.1 116 TLHPELEMIEQRIIAPADQLLEVIKVIRKMALKRQHKQLDYDRHRATLKKLQDKKEktLKDEKALFKAESDVEQATADFNYFNDLLKEE 204
                 5667777888888888889999999999999999*****************99865447888899999999999999988777777655 PP

>> CYYR1  Cysteine and tyrosine-rich protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   9.5    0.0083        21      85     148 ..     293     347 ..     278     348 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0083
       CYYR1  85 rgtrvgvlraayintvsqsypgapppysydyemefaadlpppytptpprsaqysppppypgnsr 148
                  + r  v ++++ nt++++   +pppys +           p +p+  ++a+  pppp p  sr
  KKY21933.1 293 LAKRDSVASSTRQNTITDGQENPPPPYSPNS---------TPTSPSLVAAAKSKPPPPKPKPSR 347
                 56788999*******************9653.........577888888888899999988776 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.6    0.0072        18      47      87 ..      37      77 ..      15     102 .. 0.64
   2 ?    5.2   7.5     0.011        29      37     103 ..     149     217 ..      98     240 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0072
      APG6_N 47 eeleeleeeleklekeeeelleeLkelekereeleaelaal 87
                   +ele+e +kl++e ++ +e ++ + +++ e  ++++++
  KKY21933.1 37 RRFQELEKETKKLHDESKKYFEAINGMLNHQIEFSKAIQEI 77
                34455555555555555555555555555555555555554 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.011
      APG6_N  37 kekkeeek.......qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwr 103
                 ++     +       ++  l++l+++ ek+ k+e++l++   ++e++ ++ +     l+eel +l + e++f+r
  KKY21933.1 149 RQ-----HkqldydrHRATLKKLQDKKEKTLKDEKALFKAESDVEQATADFNYFNDLLKEELPKLFALEAEFIR 217
                 22.....1334456689999999999999999999999999999999999999999999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1591  (0.0887389); expected 358.6 (0.02)
Passed bias filter:                      676  (0.0377043); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.52
# Mc/sec: 2378.93
//
Query:       KKY21934.1  [L=344]
Description: putative indoleaminedioxygenase subfamily [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-95  318.3   0.0    8.3e-95  318.1   0.0    1.0  1  IDO       Indoleamine 2,3-dioxygenase


Domain annotation for each model (and alignments):
>> IDO  Indoleamine 2,3-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.1   0.0   4.6e-99   8.3e-95     165     433 ..       1     281 [.       1     282 [. 0.88

  Alignments for each domain:
  == domain 1  score: 318.1 bits;  conditional E-value: 4.6e-99
                 HHHHHHHHHTTHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHTTHHHHS-HHHHHHTHHHHH--SSSBGG..GTT-BEET.TTE...SSEB-B--- CS
         IDO 165 iEargaealklmlsaldeareadearvtsaLerlaevideltklLervrekcdpevFYhkiRpflaGskndaeaglpegvlye.gveegkeevrqlsGg 262
                 +Ea+g + +++ml+a+++are+d ++v ++L++lae+idel+ lL r++e+cdp+vFYh+iRp+laGskn+++aglp+gvly+ g  +g  + rq+sGg
  KKY21934.1   1 MEAKGGPSIPIMLRAIAAAREDDISAVIECLHSLAEIIDELGVLLVRMYESCDPHVFYHRIRPYLAGSKNMKDAGLPDGVLYDeG--NGLVSRRQYSGG 97 
                 8*********************************************************************************956..899999****** PP

                 GGGG-HHHHHHHHHTT--TT..............S.S...SHHHHHHHHHGGGS-HHHHHHHHHHHTS--HHHHHHHTT-HH...HHHHHHHHHHHHHH CS
         IDO 263 SagQSsliqalDvfLgvehertgekaaeakk.esekk...kaeesFleemrkYmPgphrrFLehlesaasirelvlsaeseeeeelreaYnaaveaLke 357
                 S++QSsliq+lDv+Lgveh++tgek+ e+++ e+e+    + +++F++emrkYmPg+hrrFL+ +es+a+ire+v +++++  ++l+ aY+a++++Lk+
  KKY21934.1  98 SNAQSSLIQFLDVVLGVEHRPTGEKKVETSEsETEPGiapAPRHNFIQEMRKYMPGKHRRFLQVVESIANIREYVEANHAN--RTLVLAYDACLAMLKT 194
                 *********************9999988888444333556789********************************666665..58************** PP

                 HHHHHHHHHHHHTHHHHHH...............................S---------------BTTTHHHHHHHHHHHHHHHHT CS
         IDO 358 lRdkHikivtlYivlparkakkeeskkla......a.....kaekeaeaeekkelekkeeseekelkGTGGtdLvpfLkqvRdeTke 433
                 lRdkHi++v++Yi++++r+++ ++s+ ++      +     ++ ++++ +++ +++++    +k+++GTGGt+L+pfLkq+RdeT e
  KKY21934.1 195 LRDKHIQMVSRYIIVKSRERSVSRSRGRQmdsrspEalrrpTNIASTKYRSDGKKNDEFGGGSKKQRGTGGTALIPFLKQARDETGE 281
                 *******************888888877766665515665534444444444556666778999*********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 2102.47
//
Query:       KKY21935.1  [L=377]
Description: putative alphamannosyltransferase subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-105  352.8   0.0   1.4e-105  352.5   0.0    1.0  1  Anp1             Anp1
  ------ inclusion threshold ------
      0.096   12.5   0.0       0.19   11.5   0.0    1.4  1  Glycos_transf_2  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Anp1  Anp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  352.5   0.0  1.5e-109  1.4e-105       2     263 ..      78     342 ..      77     343 .. 0.96

  Alignments for each domain:
  == domain 1  score: 352.5 bits;  conditional E-value: 1.5e-109
        Anp1   2 vekydlnklestadaaenkekvLiltplrdaekflpeyfenllkltyphelidLaflvsdtsegdktlealeeelkklqkkkkkkrfrsitilekdfge 100
                 v +ydln l+++a++ +n+e+vLiltpl   ++f++ y++nllk+typheli+++f++++++eg+++++al+e+++k+q+  +k+rf+s+ il++df+ 
  KKY21935.1  78 VVHYDLNGLTASANPLTNRERVLILTPL---TRFYQGYWDNLLKFTYPHELITVGFIIPRNKEGNAATTALQEAISKTQSGPEKDRFQSVVILRQDFEP 173
                 689*************************...************************************************98888*************** PP

        Anp1 101 k.isqsesdrhkvevqklRRklmaraRNsLlssaLkpehswvlwlDaDivetpktliedlishdkdvivpnvlrklpdelek...eqpYDlnsWvesee 195
                   +sq+e++rhk+e+qk+RRk+ma+aRNsLl+ +++p++swvlwlD Divetp+tliedl+s+dk++ivpn++++ ++e++k   ++pYD+nsW++s++
  KKY21935.1 174 PlTSQDEKERHKMENQKARRKAMAQARNSLLFPTIGPQTSWVLWLDGDIVETPPTLIEDLASFDKPIIVPNCFQRFYNEEKKamdIRPYDYNSWRDSTT 272
                 999**************************************************************************98775799************** PP

        Anp1 196 alelakkldeddvivegyaelatkrvhlaklrden..gdpeeeveLDgVGgvsilvkaevfrqGamFpaf 263
                 a+ela+k+++dd+++egyae+at+r+++a+++d++  +d++ + +LDgVGg+++lvka+v+r+GamFp+f
  KKY21935.1 273 AQELAAKMGPDDILLEGYAEMATYRTLMAMTADKSdsRDTRVIQPLDGVGGTALLVKADVHRDGAMFPPF 342
                 *********************************653377777889************************9 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.1e-05      0.19      62     132 ..     191     261 ..     178     285 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.1e-05
                      SSS-HHHHHHHHHHHH--SS...EEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS CS
  Glycos_transf_2  62 eenvGkagalnaglraatgd...yilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrv 132
                       ++++ a a+n  l  + g    ++l+lD D + +p +l + ++ ++k +   ++++ + +f+++ ++    r 
       KKY21935.1 191 ARRKAMAQARNSLLFPTIGPqtsWVLWLDGDIVETPPTLIEDLASFDK-PI--IVPNCFQRFYNEEKKAMDIRP 261
                      34446666666666666666999**************99999999999.66..999999999999888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 2545.91
//
Query:       KKY21936.1  [L=433]
Description: putative allantoate permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-11   42.6  11.1    2.3e-10   39.9  11.1    1.9  1  MFS_1     Major Facilitator Superfamily
     0.0078   16.4   0.0        2.5    8.3   0.0    2.4  2  ESSS      ESSS subunit of NADH:ubiquinone oxidoreductase (com


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9  11.1   2.6e-14   2.3e-10     112     353 .]     114     354 ..     112     354 .. 0.73

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 2.6e-14
       MFS_1 112 dwfpkeergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrkspkeee............kgtgpap 195
                  w++++e++   gl++ ++++G+++g +l  ++ +  +   W ++f++++ v+++++v+++++lp + ++ kr + +e+             +      
  KKY21936.1 114 MWYTRKEQPARAGLFYCFNGFGSMMGGILFYAVGQEDNfpvWKVIFLLCGSVTIVWGVVMMFFLPNDITSAKRYTLEEKTlliarsqtnrtgVY----- 207
                 6*************************99999888555588******************877777777777777666666599999666655533..... PP

       MFS_1 196 lvp.......awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllalllllla 287
                   +       +++  ++dp++wil++  ll+ +++ g+  +  l+++   g +         +ll  +g    ++a+++ +    r++++  +++ +++
  KKY21936.1 208 --NrkikmsqVFE-AFRDPQVWILFFFTLLNECINGGVANFGKLIIKGLTGGD---------SLLTTAG---PFIASKFKNI---RTYIMALYICPTII 288
                 ..33333343444.555566897888888888777777777777644444444.........2222333...3344454444...66777777777777 PP

       MFS_1 288 alglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                  + l++  + +++  lll++++iG  ++  + +l+  a+++ +  ++ t ++++ +a+++g ++gp
  KKY21936.1 289 GATLLWQLPRTNKNGLLLAYYIIGSYVASLVLALQLPANNVGGYTKRVTSTAFVFLAYCAGNIIGP 354
                 777777777799*************777776666666666667788889999999*********98 PP

>> ESSS  ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0021        19      25      75 ..      45      97 ..       4     104 .. 0.69
   2 !    8.3   0.0   0.00028       2.5      49      90 ..     153     196 ..     143     206 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0021
        ESSS 25 eeeenlyekNpdshGfdkd.pvedkenmeavfffgvsiv.lVlgsvfvaYlpd 75
                +e e + + N +shG+ ++  + +++n ++v  + ++++ l +g+ f+ Y   
  KKY21936.1 45 DEAEIFLRANNVSHGYLQElLQDEEKNKKIVRKVDFMLMpLLCGTYFLQYIDK 97
                345567788********995444555666666677776625566666777655 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00028
        ESSS  49 enmeavfffgvsivlVlgsvfvaYlpd..tsiqeWArrEAerll 90 
                   ++++f +  s+ +V+g v + +lp+  ts +    +E  +l+
  KKY21936.1 153 PVWKVIFLLCGSVTIVWGVVMMFFLPNdiTSAKRYTLEEKTLLI 196
                 679***********************834466777777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 2653.74
//
Query:       KKY21960.1  [L=593]
Description: putative f-box domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.51
# Mc/sec: 3514.08
//
Query:       KKY21961.1  [L=112]
Description: putative integral membrane mpv17 pmp22 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-20   73.5   0.1    1.6e-20   73.1   0.1    1.2  1  Mpv17_PMP22  Mpv17 / PMP22 family


Domain annotation for each model (and alignments):
>> Mpv17_PMP22  Mpv17 / PMP22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.1     9e-25   1.6e-20       1      62 []      47     108 ..      47     108 .. 0.99

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 9e-25
  Mpv17_PMP22   1 gllegksleeikeelkekfwptlkanwkvWppaqlinFyfvPlkfRvlfvnvvslgWntyLS 62 
                  gll+gk+ ++i++ ++++fwp+ ++++k+Wp+++l+nF++vP++ Rv++  +v++gW++yLS
   KKY21961.1  47 GLLKGKTTSTIVADVQKDFWPITTNGLKLWPLVSLFNFAVVPVEKRVIVGGIVGIGWGVYLS 108
                  79***********************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 768.93
//
Query:       KKY21962.1  [L=788]
Description: putative gtpase-activating protein gyp7 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-37  127.3   0.6    9.5e-37  126.7   0.6    1.3  1  RabGAP-TBC     Rab-GTPase-TBC domain
    9.7e-09   34.9   0.0    1.5e-06   27.8   0.0    2.8  2  PH_RBD         Rab-binding domain (RBD)
  ------ inclusion threshold ------
      0.018   14.6   0.0      0.032   13.7   0.0    1.4  1  Peptidase_M60  Peptidase M60, enhancin and enhancin-like


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   0.6   1.6e-40   9.5e-37       3     214 ..     406     635 ..     404     636 .. 0.89

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 1.6e-40
  RabGAP-TBC   3 lRgevWklllgyep............evkrlkksekkqeksekeksklekseeskels....qIkkDvprtfpes..esfknkqgqnqLeriLkaysiy 83 
                 +R+e+W +llg+++            + kr++    k    e + ++ +++ee+++++    +I +D+p   p+s  + + ++   +q++  L++y+ y
  KKY21962.1 406 VRKEAWLFLLGVYDwqstaderraliNSKRDEFIRLKGAWWERMVEGSSTAEEHEWWKeqkgRIGEDIPHPDPDSpfADSGTNVHMEQMKDMLLTYNEY 504
                 8************************97788887777776666666666666666663312227**********5566777777999************* PP

  RabGAP-TBC  84 npevgYcqGmndivaplllvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeegldlelfaikwfltlflrefple 182
                 n  +gY+qGm+d+++p+++v++d   aFw+fv ++   +++ ++  +++g++++l  l++l++  dp+ly hl++ + ++ +f ++ +l +++ref + 
  KKY21962.1 505 NRSLGYVQGMSDLLSPIYAVMQDDAVAFWAFVGFM--SRMERNFLRDQSGMRAQLLALDQLVQLLDPQLYLHLESADSTNFFFFFRMLLVWYKREFEWA 601
                 ***********************************..9************************************************************* PP

  RabGAP-TBC 183 tvlrlwDlllege...kfvllrvalailklleeel 214
                  +lrlw++l++ +   +f +l+va+ail+++++ +
  KKY21962.1 602 DTLRLWEILWTDYqssQF-HLFVAVAILERHRDVI 635
                 *******99966667455.************9987 PP

>> PH_RBD  Rab-binding domain (RBD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   2.5e-10   1.5e-06       3     125 ..       1     150 [.       1     165 [. 0.81
   2 !    3.7   0.0    0.0063        38     124     156 ..     178     209 ..     174     214 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 2.5e-10
      PH_RBD   3 lfeKnnVflets.dqdslikGvislvekksdvilkWiPnqlmkkkdqpssasskseelfdpdyepdwavistv.......................... 74 
                 +++K  V++++  + ++ i G i l+++ks+      P    + + +p s+ss++++  ++ y   w   s +                          
  KKY21962.1   1 MYSKSKVYVHPTsSAKDNIPGFIALIQQKSS------PLE-REVSPRPASSSSQTKN--ASSYLLAWVPESSLgdaystyvkvdlsegnspprqtylvp 90 
                 69********8648999***********876......322.2222334444444444..666666665555556666666699**************** PP

      PH_RBD  75 .......esddrskwaitvslkelksirkskpgless..ylilvtkdGvslpplhFeqGg 125
                        +sd+ + +a+ v ++e+ s+    p l++    +++ tk G s+p+l+F+  +
  KKY21962.1  91 plptttqHSDNIGMYAFAVPVSEIYSLLVRPPSLGWWfgSVVINTKVGDSFPALFFHDSE 150
                 ******999**************************97679*****************866 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0063
      PH_RBD 124 Ggtrallkalskylllalspldsrlllvvrldp 156
                 Gg  ++l+ l++y+ +  s  d +++l+++ d+
  KKY21962.1 178 GG-DEVLRWLKRYVTVERSGADPNVYLINPSDD 209
                 34.599***********************9997 PP

>> Peptidase_M60  Peptidase M60, enhancin and enhancin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.4e-06     0.032      15      75 ..     597     656 ..     587     695 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.4e-06
  Peptidase_M60  15 eeeWketlenskapvaelvgkrviltvpteslkklsevdveellklydrvvelvnevagld 75 
                    e eW +tl+  +  ++++++++++l v+++ l  +++v   + lk++d++++ +ne++g+ 
     KKY21962.1 597 EFEWADTLRLWEILWTDYQSSQFHLFVAVAILERHRDV-IIQHLKHFDEILKFINELSGRI 656
                    569**********************************9.77778***************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 5310.34
//
Query:       KKY21963.1  [L=174]
Description: putative atp synthase subunit d [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-22   80.1   0.6    2.1e-22   79.7   0.6    1.1  1  Mt_ATP-synt_D  ATP synthase D chain, mitochondrial (ATP5H)
  ------ inclusion threshold ------
      0.034   14.6   2.8      0.056   14.0   2.8    1.4  1  Calpain_inhib  Calpain inhibitor
       0.04   14.1   1.0      0.055   13.7   1.0    1.2  1  GIDA_assoc     GidA associated domain
      0.066   13.1   1.9       0.53   10.2   0.9    2.3  2  Prefoldin      Prefoldin subunit
       0.14   11.9   2.2       0.17   11.6   1.4    1.4  1  LXG            LXG domain of WXG superfamily


Domain annotation for each model (and alignments):
>> Mt_ATP-synt_D  ATP synthase D chain, mitochondrial (ATP5H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.6   5.8e-26   2.1e-22       9     142 ..      11     147 ..       5     155 .. 0.87

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 5.8e-26
                    S-HHHHHTTS..-GGGHHHHHHHHHHHHHHHHHHHHS-SS-----HHHHHHHSSSTTHHHHHHHHHHH--.------TTTTHHHHHHHHHHHHCHH CS
  Mt_ATP-synt_D   9 idwaalaerv..ppnqkaqfkalkaksdeylrrvaklPeelpkIdWayYkknvakeglVdeFekkYealk.ipypedkyteevdaeekevkkeike 101
                     dw++l   +  + ++++q++a+k+++d   rrv++l ++++++d+a+Y++ ++++++Vde e   +++k   y  +k+ ++++a e  ++k+++e
     KKY21963.1  11 LDWTKLSSGLglRGSTATQLQAFKKRNDDARRRVQALSAAPQTVDFAHYRSVLKNQAVVDEIESFTKSFKpATYDVSKQIKAIEAYEVSAVKSAEE 106
                    566666664311567889******************************************99886667752456667777**************** PP

                    HHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXXXXXXXXXXX CS
  Mt_ATP-synt_D 102 fkeeskkrieelekeleklksllpfeemtmedfaeafPeta 142
                     k  ++k++++lek+l++++++ pfe++t++d+++a Pe  
     KKY21963.1 107 TKGLVEKELKSLEKTLANIEEARPFEQLTLDDIVAAAPEIE 147
                    **************************************976 PP

>> Calpain_inhib  Calpain inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   2.8   1.6e-05     0.056      35     122 ..      87     167 ..      25     172 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.6e-05
  Calpain_inhib  35 alasevvsaaaapavksaapekeeekesmsddAldaLsdsLgkrepdpeepkkppedkVkeekakeekreklGerddTlPPeYRLlek 122
                    +++ ++++a  ++avksa+  k        ++ l +L  +L + e+  + ++++  d+V  +   eek ++l  +   +PP Y+  ek
     KKY21963.1  87 SKQIKAIEAYEVSAVKSAEETKG-----LVEKELKSLEKTLANIEEARPFEQLTLDDIVAAAPEIEEKTKELVRKGRWVPPGYK--EK 167
                    44444555556666666655555.....78888***********9998888********************************9..43 PP

>> GIDA_assoc  GidA associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.0   1.5e-05     0.055      40     123 ..      36     119 ..      33     158 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
                 -CCCHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHH.HHHT....EHHHHCTT.ST--HHHHHCCHH CS
  GIDA_assoc  40 RaDnAdlRLtekgrelGlvseeryekfeekkeeieelkellkstklkseewkkllekkeskklslaellkr.pevkledlleelp 123
                 R+D+A  R   ++ +   v+ ++y+++ ++++ ++e++++ ks+k ++ +++k+ ++ e+ ++s+++  ++ + +  ++l ++l+
  KKY21963.1  36 RNDDARRRVQALSAAPQTVDFAHYRSVLKNQAVVDEIESFTKSFKPATYDVSKQIKAIEAYEVSAVKSAEEtKGLVEKEL-KSLE 119
                 9*******************************************997667666644444444433332222122222222.1111 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.096   3.4e+02      12      37 ..      27      52 ..      24      61 .. 0.79
   2 ?   10.2   0.9   0.00015      0.53      68     105 ..      97     134 ..      95     152 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.096
                HHHHHHHHHHHHHHHHHHHHHTT.-T CS
   Prefoldin 12 laqlkeaieelektletlktlkkede 37
                 +ql++ ++++++++ +++ l+++++
  KKY21963.1 27 ATQLQAFKKRNDDARRRVQALSAAPQ 52
                57899999999999999999888544 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00015
                 TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  68 gyyveksleeAiellkkkleelekqlekleeeleklkd 105
                 ++++ ks+ee + l++k+l++lek+l ++ee+  + + 
  KKY21963.1  97 EVSAVKSAEETKGLVEKELKSLEKTLANIEEARPFEQL 134
                 79999************************998766555 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.4   4.6e-05      0.17      63     160 ..      62     156 ..      55     157 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.6e-05
         LXG  63 ltslqdlieqyeefLkkikealesvepssngfidedfLeqelenglkkakevteelkdeinkilasvsdivslpelddsevkdslqkakkkvqetiek 160
                 +   q +++++e+f k +k a+++v   +   i+   +   + +  ++ k  +e   ++++k+la++ +   +++l+++++++ + + ++k++e ++k
  KKY21963.1  62 VLKNQAVVDEIESFTKSFKPATYDVS-KQIKAIEAYEVS--AVKSAEETKGLVEKELKSLEKTLANIEEARPFEQLTLDDIVAAAPEIEEKTKELVRK 156
                 667899******************44.666777766666..559999**********************************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       994  (0.0554409); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1185.87
//
Query:       KKY21964.1  [L=205]
Description: putative nascent polypeptide-associated complex [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-22   77.7   0.0    1.7e-21   75.9   0.0    1.9  2  NAC            NAC domain
  ------ inclusion threshold ------
       0.14   12.1   5.5       0.24   11.3   5.5    1.4  1  RNA_pol_Rpo13  RNA polymerase Rpo13 subunit HTH domain
        1.5    8.8   8.4        1.6    8.7   5.0    2.0  2  PGA2           Protein trafficking PGA2
        3.3    8.3  16.0        2.3    8.9  13.1    2.1  2  Ribosomal_60s  60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> NAC  NAC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.0   3.7e-25   1.7e-21       1      56 [.      53     108 ..      53     109 .. 0.98
   2 ?   -1.6   0.0      0.61   2.8e+03      27      40 ..     169     181 ..     161     190 .. 0.70

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 3.7e-25
         NAC   1 ekKlrkalkklglkeipgieeVtirksdgkvlvfdnPkVqkspgsntyvvfGeaee 56 
                 ekK+rka++klglk +pgi++Vt+r++++ ++v++nP+V++sp snt+++fGea+ 
  KKY21964.1  53 EKKARKAISKLGLKHVPGITRVTLRRPKNVLFVVSNPDVYRSPTSNTWIIFGEAKI 108
                 8*****************************************************97 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.61
         NAC  27 sdgkvlvfdnPkVq 40 
                 +d  +lv +++ V 
  KKY21964.1 169 KD-IELVMTQAGVS 181
                 34.78888888887 PP

>> RNA_pol_Rpo13  RNA polymerase Rpo13 subunit HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   5.5   5.4e-05      0.24       2      31 ..     148     177 ..     147     180 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.4e-05
                    XXXXXXXXXXXXXXX....XX---TTHHHHH CS
  RNA_pol_Rpo13   2 EektvEEeEEeEvptvdr.vsiadiEllvkn 31 
                    Eek+vEEe  +E++  +  + + diEl + +
     KKY21964.1 148 EEKKVEEEDDDEEVD-ESgLEAKDIELVMTQ 177
                    899999999999999.888********9976 PP

>> PGA2  Protein trafficking PGA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.08   3.6e+02      78     116 ..      25      63 ..      11      69 .. 0.59
   2 ?    8.7   5.0   0.00035       1.6      44     120 ..     114     193 ..     101     199 .. 0.59

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.08
        PGA2  78 esdedddegeeeedvakasgvpewgkkarkrqkkvlkkl 116
                 +s ++d e+ ++e++   +++ + +++ +k+ +k + kl
  KKY21964.1  25 SSSDSDVEAGDGETSIPGGATVAIHSRNEKKARKAISKL 63 
                 333334344455555555566667777777777777665 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00035
        PGA2  44 qrekeeekeeaeekaa...kkakvspnalRggeaksgesdedddegeeeedvakasgvpewgkkarkrqkkvlkkleeea 120
                 q +++++++ a+++aa   ++a  + ++ +g++ ++++++e+dd++e +e   +a++ +   ++a    kk +k l+e++
  KKY21964.1 114 QAQASAAQQLAAQEAAgvgSHAGHNHDEGKGKAPEEKKVEEEDDDEEVDESGLEAKDIELVMTQAGVSRKKAVKALKEND 193
                 33444444444444445556666667777777766566666666666656655555556666666666677777777665 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  13.1    0.0005       2.3      33      79 ..     106     159 ..     101     166 .. 0.57
   2 ?   -0.7   0.2       0.5   2.2e+03      30      45 ..     166     181 ..     159     195 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0005
                    XXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX- CS
  Ribosomal_60s  33 kdieellangaakla.......aaaaaaaaaaaaaaaaaaaeekkkeeeeeEee 79 
                     +ie+l ++++a++a       aa+  + a+   ++++ +a e+kk eee+++e
     KKY21964.1 106 AKIEDLNSQAQASAAqqlaaqeAAGVGSHAGHNHDEGKGKAPEEKKVEEEDDDE 159
                    689999999999988877655433344444444444444444444444443333 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.5
                    XXXXXXXXXXXXXXXX CS
  Ribosomal_60s  30 legkdieellangaak 45 
                    le kdie ++++++ +
     KKY21964.1 166 LEAKDIELVMTQAGVS 181
                    6666666666665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1160  (0.0646996); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1422.22
//
Query:       KKY21965.1  [L=147]
Description: putative ribosomal protein l14 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-28   98.9   0.5    2.5e-28   98.4   0.5    1.2  1  Ribosomal_L14e  Ribosomal protein L14
    3.7e-07   29.9   0.1    7.2e-07   29.0   0.1    1.5  1  KOW             KOW motif
  ------ inclusion threshold ------
      0.082   12.9   0.0       0.17   11.9   0.0    1.5  1  Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L14e  Ribosomal protein L14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.5   4.2e-32   2.5e-28       1      74 [.      57     131 ..      57     132 .. 0.99

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 4.2e-32
  Ribosomal_L14e   1 pRqaiplkrlkLtkivl.klprgartgavkkawekadveekwaksawakklaarekraaltDFdRFkvmvakkqr 74 
                     pRq i++  l+Lt+iv+ k+p  +++ga+kk wek+++++k+a+s++akk++++ +r++ltDF+RFkv ++kkq 
      KKY21965.1  57 PRQPIHYDALTLTPIVIeKIPLRVGNGALKKLWEKQEIDQKFASSSYAKKREQQDRRKNLTDFERFKVLRLKKQA 131
                     8************************************************************************96 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1   1.2e-10   7.2e-07       1      32 []      16      46 ..      16      46 .. 0.95

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.2e-10
                TTSEEEESSSTTTTCEEEEEEEETTTTEEEEE CS
         KOW  1 pGdhVkVvsGphkGktGkVvkvdqhkvrVfvd 32
                +G++V + sGp++Gk++ +v+++++k r+++d
  KKY21965.1 16 VGRIVLIRSGPYEGKVAAIVEIIDNK-RALID 46
                79************************.99887 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.8e-05      0.17       1      28 [.      31      58 ..      31      60 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.8e-05
                    EEEEEEE-TTSSEEEEE-.TTS-EEEEEE CS
  Prot_ATP_ID_OB  1 VatVsEvlddteraiVkt.ssdeevvvsl 28
                    Va ++E++d  +ra++ + ss+e  vv++
      KKY21965.1 31 VAAIVEIIDN-KRALIDGpSSKEGAVVPR 58
                    899*******.*******999***99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 994.65
//
Query:       KKY21966.1  [L=518]
Description: putative integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.008   16.4   0.0      0.065   13.5   0.0    2.2  1  RGS       Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.6e-06     0.065      22      84 ..     294     455 ..     278     488 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.6e-06
                 TTCTHHHHHHHHHHHHHTS.....................SHHHHHHHHHHHHHHHHTSTTST.TSSTS-HHHHHHHHHHHCSS............... CS
         RGS  22 efseenlsFwlaveefkka.....................keqeelkkkakeIyneylapssp.kelnidkklreelekrleke............... 83 
                  fs en+sF+ +v e+k+                      + ++   + a eIy+ +++++ +   +n++++  +ele+ l                  
  KKY21966.1 294 DFSGENISFLNHVREWKEGwapptnnrlrkpngpkllegdALRRRQFNLAVEIYSSFVSMQYSaFPINLSSAHHKELEAILDGPasminahvhdvsaip 392
                 5899*********************************887666666777*********998773567*********99998876555555555555555 PP

                 ..............................................................S CS
         RGS  84 ..............................................................q 84 
                                                                               +
  KKY21966.1 393 fatwdaecqipgyekdttsilsssvsddfsqttavsgnletfrnlslfklgnrlpddilipdS 455
                 555555555555555555555555555555555555555555555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 3141.75
//
Query:       KKY21967.1  [L=453]
Description: putative toxin biosynthesis [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-12   46.9   0.9      1e-11   45.9   0.9    1.5  1  Abhydrolase_6  Alpha/beta hydrolase family
    1.2e-06   28.0   0.0    2.1e-06   27.2   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.037   13.7   0.0      0.099   12.3   0.0    1.7  2  Abhydrolase_1  alpha/beta hydrolase fold
       0.23   10.1   0.0       0.36    9.5   0.0    1.2  1  Ndr            Ndr family


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.9   2.3e-15     1e-11       3     219 ..      56     372 ..      54     373 .. 0.54

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 2.3e-15
                    EE--GC.....GC..HHHHHHHHCCT......CEEEEE--TTST..........S-GGCS--HHHCHHH...HHHHCCTT..TTSEEEEEETCHHH CS
  Abhydrolase_6   3 llHGagssassWl..vapLaallaag......vhvlapDlpGhG..........rsdpppldledladl...aalldelaagggpvvlvGHSlGGa 77 
                     +H+ g++++ +   + +L +++++       +  +  D   +G          ++dp++ d+  ++dl    +l +++   ++p+v++GHS+G+ 
     KKY21967.1  56 GAHANGFPKELYEplWEELIKRSRKSkirirsI--WLADVAWQGqsgvlnenklGNDPSWMDH--ARDLflmINLKRHEM--PRPIVGIGHSMGAN 145
                    578888887777422445544444447777667..9999988884456666444445555555..888899999*****7..************98 PP

                    ....HHHHHHHCC..EE..EEES-............----TTT..S----TTHHHHHHTT-C.......CCCHCCH.............S-HSCCC CS
  Abhydrolase_6  78 ....lalaaaplalvvg..vlldp........pp..talpagl..laaalelllallallrl.......lawlsre.............plprlfl 135
                        la     ++++++  +l+dp        pp  +  pa+    ++++e++  + a++++        aw+ r                   + 
     KKY21967.1 146 nlvnLAYI---HPRLFTtlILIDPvilefpttPPeaG--PATAqlSNFRREIWPSRSAAATSfqkskffQAWDPRVlerwiqfglrdlpT----LK 232
                    65445555...66777779*****8888666533330..222244333333333222222223333333333322111222222432321....22 PP

                    CHHH.......C.....CCCHCHCCCGHH.......................................HHCCHHCHTTCCHHTT-TTGCEEE.CTT CS
  Abhydrolase_6 136 aded.......a.....daawrarlarla.......................................allaglgllpaaawadlpvpllvl.gge 179
                    ++ +       a      +         +                                       ++  + g+++ + +++l++p+l + g++
     KKY21967.1 233 HPSTsaspdkgAgvtltTT---------RdqevftfarpnysayglhpsnpparethadldpktptiyPFYRPEGPNTFDQLPHLRPPVLYIfGET 319
                    2222222112212222211.........12233344445566666666666666666655554444433333444667889999999996554766 PP

                    -C.HHHHCHH.CCCHSTTEEET............CE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 180 Dp.lvprlle.rllaqagarlp............vvlpgaGHlphleepdevae 219
                     + + p l+e rll  +g +++            +v+++aGHl+ +e+ +e+a+
     KKY21967.1 320 SAmSTPSLIEsRLLI-TGTGVGgsggrplsrvqsTVIKDAGHLVAMEKVRETAD 372
                    664555554434444.555554455566777788********999978799987 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   4.6e-10   2.1e-06      42     139 ..      96     198 ..      86     222 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 4.6e-10
  Hydrolase_4  42 hGrse....gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalkikakl.k.appllklllkllgkl 133
                  +G+s+    +k g  ps+ d+ +Dl  +++  k+++  +p++ +GhSmG+   ++++  +p+ ++ lil+ P++   + + + a p+ + l+++  ++
   KKY21967.1  96 QGQSGvlneNKLGNDPSWMDHARDLFLMINL-KRHEMPRPIVGIGHSMGANNLVNLAYIHPRLFTTLILIDPVILEFPTTpPeAGPATAQLSNFRREI 192
                  788888888999999*************955.54555669*********************************9877776445777777777788787 PP

  Hydrolase_4 134 lpklqv 139
                  +p+ + 
   KKY21967.1 193 WPSRSA 198
                  777766 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.2e-05     0.099      57     127 ..     114     188 ..      60     214 .. 0.72
   2 ?   -2.2   0.0      0.57   2.6e+03     237     255 ..     347     365 ..     279     367 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.2e-05
                    HHHHHHHH.HH.HHHCTTSSEE.EEEETHHHHHHHHHHHHHGGGEEEEEEESE.CSSCCHHHHHHHHHHHHHHCH CS
  Abhydrolase_1  57 asvaddld.ri.ldalgddklt.lvGhSmGGmialayaaeyperVkalvllga.idpaaslieaqrqqaksfpdf 127
                    +++a+dl  +i l ++   +++  +GhSmG     ++a  +p     l+l+++ i +++ +  ++  + +++ +f
     KKY21967.1 114 MDHARDLFlMInLKRHEMPRPIvGIGHSMGANNLVNLAYIHPRLFTTLILIDPvILEFPTTPPEAGPATAQLSNF 188
                    567777776667444444444449*****************************9666666665555555555555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.57
                    HTSEEEEEEETCSSSHHHH CS
  Abhydrolase_1 237 lpkkrlvvisdagHlafle 255
                    l++++  vi dagHl+ +e
     KKY21967.1 347 LSRVQSTVIKDAGHLVAME 365
                    4456667888888888777 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   7.9e-05      0.36     100     132 ..     134     166 ..     104     170 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 7.9e-05
                 -EEEEEETHHHHHHHHHHHHSGGGEEEEEEES- CS
         Ndr 100 sviglGvgaGAyilarfalkhperveglvLini 132
                  ++g+G   GA+ l+  a  hp + + l+Li++
  KKY21967.1 134 PIVGIGHSMGANNLVNLAYIHPRLFTTLILIDP 166
                 589****************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.51
# Mc/sec: 2680.84
//
Query:       KKY21968.1  [L=365]
Description: putative formate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-51  172.0   0.0    1.4e-50  171.1   0.0    1.4  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    6.4e-16   58.2   0.0    9.4e-16   57.7   0.0    1.3  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    0.00066   19.9   0.0     0.0019   18.4   0.0    1.7  2  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.1   0.0   2.3e-54   1.4e-50       1     177 [.     129     313 ..     129     314 .. 0.92

  Alignments for each domain:
  == domain 1  score: 171.1 bits;  conditional E-value: 2.3e-54
                   HHHHHHHHTTHHHHHHHHHTTCC.HTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHHCHHHHTC.EECSHHHHHHH-SE CS
  2-Hacid_dh_C   1 lalllallrrlaeadeevregew.ksekallgkelsgktvGiiGlGrIGqavakrlkafgm.kviaydrskkkeeeeeelgv.elvsleellaesDi 94 
                   ++ +lal+r++  a+e+v +g+w  +  a   ++l++k vG + +GrIG++v +rlk+f++ +++++d ++ k e e+e g+ +++slee+la++D+
    KKY21968.1 129 VMTILALVRNFVPAHEQVAAGDWnVAAVAKNEYDLENKVVGTVAVGRIGERVLRRLKPFDCkELLYFDYQPLKPEVEKEIGCrRVESLEEMLAQCDV 225
                   5889*******************7777788899****************************7799999999999999*****5666*********** PP

                   EEE-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTT.....EEE-SS- CS
  2-Hacid_dh_C  95 vslhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpn.....viltPHi 177
                   v++++pl+++tr+l+n+e ++kmkkga+l+NtaRG++v +e+++eaLksg++ g++ Dv+ ++p+p+d+pl+ + n         PH+
    KKY21968.1 226 VTINCPLHEKTRGLFNKELISKMKKGAWLVNTARGAIVVKEDVAEALKSGQLNGYGGDVWFPQPAPKDHPLRYATNpwgggNATVPHM 313
                   ***********************************************************************88877555555666666 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   1.6e-19   9.4e-16      13     103 ..      33     253 ..      25     341 .. 0.70

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 1.6e-19
                 HHHHHTTEEEEEES..CSSHHHCHHHHTTESEEEE-TTS..-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHT..T-EEEE-TTTTHHHHHHHH... CS
                 xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx... RF
  2-Hacid_dh  13 ellkeegvevevkd..ellteellekakdadalivrsnt..kvtaevlealpkLkviaragvGvDnvDldaaker..GilVtnvpgystesvAElt... 102
                 ++l+++g+++++++  e  + +  +++ da+++i++      +tae l++++kLk+ ++ag+G D+vDl+aa+e   Gi+V++v g++  svAE++   
  KKY21968.1  33 KWLEDQGHTLVTTSdkEGENSTFDKELVDAEVIITTPFHpgYLTAERLAKAKKLKLAVTAGIGSDHVDLNAANETngGITVAEVTGSNVVSVAEHVvmt 131
                 6788878744444447777778999999*******9998778******************************886459******************777 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  KKY21968.1 132 ilalvrnfvpaheqvaagdwnvaavakneydlenkvvgtvavgrigervlrrlkpfdckellyfdyqplkpevekeigcrrvesleemlaqcdvvtinc 230
                 777777777777777777777777777777777776666666666666666666666666666666655555555555555555555555555555555 PP

                 ......................T CS
                 ......................x RF
  2-Hacid_dh 103 ......................a 103
                                       +
  KKY21968.1 231 plhektrglfnkeliskmkkgaW 253
                 55555555555555555555551 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.56   3.3e+03      58      92 ..      85     119 ..      39     148 .. 0.58
   2 !   18.4   0.0   3.1e-07    0.0019       2     108 ..     168     276 ..     167     281 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.56
                    EEEE-SSSHHHHHHHHHSHCCC--TT-EEEE-S-- CS
  NAD_binding_2  58 vvitmvkagkavdeviegllealkkgdilidgsts 92 
                    +  + v+ag   d+v  + +++ + g ++ +++ s
     KKY21968.1  85 KLKLAVTAGIGSDHVDLNAANETNGGITVAEVTGS 119
                    44444444444444444444444444444333333 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 3.1e-07
                    EEEE--SHHHHHHHHHHHHTT.-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkag.ykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstsspe 95 
                    +g + +G +G+   ++l+  +  ++  ++ ++ k e   + g++ +es+ee++a++dvv +  +  ++++ + ++ l++++kkg+ l++++  ++ 
     KKY21968.1 168 VGTVAVGRIGERVLRRLKPFDcKELLYFDYQPLKPEVEKEIGCRRVESLEEMLAQCDVVTINCPLHEKTRGLFNKeLISKMKKGAWLVNTARGAIV 263
                    577778999999999998655156889999999999989999*******************************999***************99999 PP

                    HHHHHHHHHHHTT CS
  NAD_binding_2  96 dtrelakelkekg 108
                      +++a++lk+ +
     KKY21968.1 264 VKEDVAEALKSGQ 276
                    9999999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2647.76
//
Query:       KKY21969.1  [L=1496]
Description: putative cytokinesis protein sepa [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-84  284.5   6.3    1.3e-84  284.5   6.3    1.9  2  FH2       Formin Homology 2 Domain
    1.2e-62  210.8   0.0    3.5e-62  209.3   0.0    1.8  1  Drf_GBD   Diaphanous GTPase-binding Domain
    6.7e-55  185.7   5.5    7.2e-54  182.4   1.6    3.2  3  Drf_FH3   Diaphanous FH3 Domain


Domain annotation for each model (and alignments):
>> FH2  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   1.8      0.76   4.5e+03     270     336 ..     452     523 ..     447     535 .. 0.71
   2 !  284.5   6.3   2.2e-88   1.3e-84       5     372 .]     837    1229 ..     834    1229 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.76
                 HHHCCTS-HHHHHHHHHHHHHH.HHHHHHHHHHCCT....TSSTT-THHHHHHHHHHHHHHHHHHHHHHHHH CS
         FH2 270 vkkaakvnleslekevkklekg.lkklekelessek....keepsdkflevlkeflkeaeeklkkleeelke 336
                 + +aa  + ++++++v+    g +kkl+k++e+++     ++ +++ +++ l +f +  +++l++ e e +e
  KKY21969.1 452 IAEAAMAERDEMKAQVELGANGlVKKLQKQIEEQAGiielQSRQNESLKAELADFHRIRAQELQRNELETRE 523
                 566666666777777765555525889999999998888888888899999999988777777766555554 PP

  == domain 2  score: 284.5 bits;  conditional E-value: 2.2e-88
                  ---SS-B------EESSGGCTTSCCCCTCCHHHHC.........TSHHHHHHHHTBSC--HCCH......HCSCCTTCCESSS-HHHHHHHHHHHHH CS
         FH2    5 ikpkkkLkplhWdkvkpsqdrstvWdklkeesfek.........eldlseleelFsakekkkkkkksekskkskkkkkkvklLdpkrsqniaIlLkk 92  
                   +pkkkLk lhWdkv++ q++  vW+++  + ++k         +++l+e+e+lF+ake+k         ++s kk++k +++++++ ++ +I + k
  KKY21969.1  837 LRPKKKLKALHWDKVDTPQVT--VWASHAPSHEAKeekyielqkKGVLDEVEKLFMAKEVKVLG------SSSNKKSDKKQIISSDLRKTYQISMAK 925 
                  58******************8..*****9998888999**********************9888......6799999******************** PP

                  H.TS-HHHHHHHHHTTTTCCCT.............HHHHHHHH.HHCGGHHHHHHH....HCTCTSGTTB-HHH.HHHHHHTT.STTHHHHHHHHHH CS
         FH2   93 l.kltaeeiveaileldeeald.............lellenLl.kmaPtkeelkkl....keykgevseLseae.qFllelvk.iprlekRleallf 168 
                  + ++++ee++++i+++d+e+ld             + + +n +  maP++++++      ++ ++++seL++++ ++l +  +  +++++R++al++
  KKY21969.1  926 FsQIPVEEVIRMIIHCDKEVLDnnvvmdflqkedlCTIPDNTSkLMAPYSKDWTGPdalnSTREQDPSELTREDqIYLATAYElHHYWKARMRALAL 1022
                  ***********************************9999999988*********996643344455********9********************** PP

                  HHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-STTTSBHHHHHHHHHHTTSGGGGGHHH CS
         FH2  169 kstfeeeveelkrslealeaaseeLknskkfkklLeliLalGNymNdgtrrgqAkGFkLssLlkLsdvKstdnkttLLHylvkiireklpevldfss 265 
                    +fe+e+ +++ +l+++ ++se++++s +++++L liL +GNymNd++  +qA+GFkLssL +L ++K+++n+ t+ +++++i+r++++++++f +
  KKY21969.1 1023 TRSFESEYDHISDKLKDVVRVSESIRDSTSLMSVLALILDIGNYMNDSN--KQASGFKLSSLARLGMIKDDKNESTFADLIERIVRNQYAQWEGFVD 1117
                  ***********************************************88..9********************************************* PP

                  HTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCT....TSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT.CCHH CS
         FH2  266 eLknvkkaakvnleslekevkklekglkklekelessek....keepsdkflevlkeflkeaeeklkkleeelkeakelvkelveYfgedkk.evsp 357 
                  +++ v  a+k+n+++l+ + kk+ +++++++ +l++++     k++p+d++ +v+++ +kea++k ++++  l+e+ +++++++ Yfged++ +  +
  KKY21969.1 1118 DISGVVAAQKLNVDQLKVDAKKYIDNIRNVQASLDAGNLsdpkKFHPQDRVAQVVQRSMKEARRKAEQMQLYLEETSRTYDDIMTYFGEDNTdDNAR 1214
                  *****************************************************************************************99999*** PP

                  HHHHHHHHHHHHHHH CS
         FH2  358 eeffkilreFlkefk 372 
                  + ff++l+ F++e+k
  KKY21969.1 1215 RDFFAKLAGFVTEWK 1229
                  ***********9986 PP

>> Drf_GBD  Diaphanous GTPase-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.3   0.0   5.8e-66   3.5e-62      19     188 .]       3     198 ..       1     198 [. 0.98

  Alignments for each domain:
  == domain 1  score: 209.3 bits;  conditional E-value: 5.8e-66
     Drf_GBD  19 el...nlpeekreallalpiekKwqlvvqdkkkkakke..............eklsksksksneeespesyvkklkddslkekqlesLrVaLrtqplsW 100
                 ++   nlpe++++++la+ + kKw+lv+qdk +++++e              ++   + ++++ee+spe+yvkk++dds++ kql+sL+V+Lrtqp+sW
  KKY21969.1   3 KRgwqNLPEQAKRQMLAYAPAKKWTLVHQDKLTEWQGEqkrrqharqtygvpDGGYGTLARADEEGSPEWYVKKVMDDSINAKQLQSLAVSLRTQPISW 101
                 556669**********************************************9999******************************************* PP

     Drf_GBD 101 vkrFieleGlvaLlnvLskinekkaee.........eedlkkeyeiikClKalmNnkvGldavlahksvikllaqsldserlktrklvlelLtalcl 188
                 vk F+e++G+vaL+nvL kin+++a++         ++dl++ey+iikClKalmNnk+G+d++lah++v  +la++l+s+rl+trklv+e+Lt+lc+
  KKY21969.1 102 VKAFVEAQGQVALTNVLMKINRRQANGpapasgmtsDKDLDREYDIIKCLKALMNNKYGADDALAHQQVPVALATCLTSPRLTTRKLVSEVLTFLCH 198
                 ************************************************************************************************8 PP

>> Drf_FH3  Diaphanous FH3 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0053        32       1      23 [.     203     225 ..     203     227 .. 0.94
   2 !  182.4   1.6   1.2e-57   7.2e-54       2     195 .]     227     429 ..     226     429 .. 0.98
   3 ?   -2.6   0.0      0.59   3.5e+03     133     170 ..    1071    1107 ..    1032    1109 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0053
                 THHHHHHHHHHHHHHCCT-SSTT CS
     Drf_FH3   1 eghekvleatldfkevaeergrf 23 
                 +gh+kvl+a+++ k+   e grf
  KKY21969.1 203 QGHLKVLQAMDHVKNQSGENGRF 225
                 69********************9 PP

  == domain 2  score: 182.4 bits;  conditional E-value: 1.2e-57
                 HHHHHHHHHHHHHHCCT-SSTTHHHHHHHHH........HSS-HHHHHHHHHHHHHHHHSSS.SHHHHHHHHHHHHCTTHHHHHHHHCTSCSHHHHHHH CS
     Drf_FH3   2 ghekvleatldfkevaeergrfrslvgaldel.......enelveykvatmllInalvnspe.dlqfRlhLRseflalGLdkiidklreleneeLddql 92 
                 ++++++e t+d+      rg+++s+vga+d++       en l+ey+vat+ l+n+++++pe dlq+R+h+R++f+a+G+++i+ k++ +++e +d+q+
  KKY21969.1 227 AWMRIVEVTIDG------RGKMGSMVGASDDYrsggvgmENLLMEYAVATLFLLNMIIDAPErDLQLRCHIRAQFIACGIKRILVKMEGFQYEVIDKQI 319
                 8***********......*******************************************87************************************ PP

                 HHHHHHHHHHHHHHHHHHT........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     Drf_FH3  93 qafeeerneDeeellerae........dktvdlddpeelfellknkvkdteaepyllsilqhllli.rddeeekesylklleelvsqivlqrtkidpkk 182
                 ++++++++ D+e+ll+r++         +  d++dp+++ + +++kv++t++++y++s++qh+lli ++d++++ ++++l+++++s+++++r+ +d+  
  KKY21969.1 320 ERYRDNEAIDYEDLLQRENssmqdsveGEVKDMNDPVQITDAIMSKVQGTRTQDYFVSAMQHMLLIrENDSDDRLRMFQLVDSMLSYVAMDRRLPDM-- 416
                 ***********************9999999***************************************************************9877.. PP

                 XXXXXXXXXXXXX CS
     Drf_FH3 183 derkslevaieeL 195
                 d ++sl++++++L
  KKY21969.1 417 DLKQSLNFTVQNL 429
                 9999*****9987 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.59
                  XXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX CS
     Drf_FH3  133 dteaepyllsilqhlllirddeeekesylklleelvsq 170 
                  + +a +  ls l +l +i +d++++  +  l+e++v++
  KKY21969.1 1071 NKQASGFKLSSLARLGMI-KDDKNESTFADLIERIVRN 1107
                  345556669999999999.7888888899999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1102  (0.0614647); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.51
# Mc/sec: 8846.02
//
Query:       KKY21970.1  [L=770]
Description: putative glycosyl family 92 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.1e-130  433.7   1.8   1.1e-129  433.3   1.8    1.1  1  Glyco_hydro_92   Glycosyl hydrolase family 92
    1.7e-50  172.1   8.8    2.7e-50  171.5   8.8    1.3  1  Glyco_hydro_92N  Glycosyl hydrolase family 92 N-terminal doma


Domain annotation for each model (and alignments):
>> Glyco_hydro_92  Glycosyl hydrolase family 92
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.3   1.8  1.3e-133  1.1e-129       1     461 [.     273     746 ..     273     747 .. 0.93

  Alignments for each domain:
  == domain 1  score: 433.3 bits;  conditional E-value: 1.3e-133
                     HHHHHHHHHTT.T--HHHHHHHHHHHHHHH.HTTEEEESS-HHHHHHHHHHHHHHTTSSEE--EE-TTE-TTTSSEEE.S--E.ESEEHHHHTTT CS
                     xxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Glyco_hydro_92   1 qArknleaEip.dldfekvraaareaWnek.LskieveggtedqkttFYtalYhallapneysdvdgeYsglddkvhkegksY.ttfslWDtyRa 92 
                     +A++ +++Eip +++++++++aa+++Wn++ +sk++ ++++++++ ++Yt++Y +++ p+++++    +s    +    + +Y   f+lWD +R+
      KKY21970.1 273 KACSYVNEEIPaETTIDALVSAAKDTWNSEvFSKVTSNSASSTDLGMLYTNMYGMHIIPSNRTGDMPGWS---AS----EYYYdDWFTLWDLFRC 360
                     69*********889****************9*********************************555555...33....234676689******* PP

                     HHHHHHHH-HHHHHHHHHHHHHHHHHHSS--SEESSS.B---S-S-THHHHHHHHHHTT--.-S-HHHHHHHHHHHHHB-S.-TT.........T CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.xxxx........x RF
  Glyco_hydro_92  93 qhplltlldperasdmvrslldiykeggwlpdwrlsnsetavmgGsnadvvladayvkgir.dfdvekayealvkdaeeep.eaad........k 177
                     +++ll++++p+++++m+++l++ y + gw+pd+r+sn++++ +gGsnad+vlada+vkg++ d+d  + ++al+kdae++p +++d        +
      KKY21970.1 361 TTSLLHIFQPTAYTEMIQGLINVYLHDGWMPDGRSSNYNGRSQGGSNADNVLADAFVKGVQvDWD--TGFAALLKDAEVTPpNNYDpispdsadN 453
                     *************************99********************************987999..***********88878878999999998 PP

                     BTTT.HHHHHHHSS--T..TTTTHHHHHHHHHHHHHHHHHHHHHTT-HHH.HHHHTTGGGGGGGEETT......TTCE--B-TTS-B-SS--TT- CS
                     xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_92 178 errg.lesylklgYvpakedesesvsrtlEyaydDfaiaqlAkalgkkedaekylkrsknwrnlfdpe......tgfmrprnadGtwaepfdpse 265
                     ++rg l ++l++gY++   ++ ++vsr++Ey+++Df+++q+Ak ++ +++a+kyl+rs+nwrn + ++      tgf+ pr+++Gt+ +++dp +
      KKY21970.1 454 HGRGaLPDWLTYGYITP--TYLRAVSRAIEYSANDFGVYQVAKSVS-PSSASKYLSRSRNWRNHYSNSttslnfTGFLVPRYSNGTFDSSYDPLQ 545
                     888889**********9..559***********************8.8899****************99************************99 PP

                     -.....STTSSSS-HHHHTT--TT-HHHHHHHHTSHHHHHHHHHHHS----TTGHHHHHHHTSS-TT-GGGTTGGGGGGGTT-HHHHHHHHHHHH CS
                     xx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_92 266 dp....eegftEgnawqysffvphDvagLielmGGkeafvkrLdslfeeeekksedsaglsgqydhgNEpsfhtpylYnyagapwktqervreil 356
                           ++ + +++aw+y f+  hD+a+L++l GG+e f+++L ++f+ ++ ++++ a +++++++gNEpsf  pyl+nya++p+++ + +r i+
      KKY21970.1 546 CGgcywADPYYQATAWEYLFSPIHDMAHLVQLTGGPEPFISKLSTIFT-PGLTTSNPAFNHTIINPGNEPSFASPYLFNYANRPDLSIQHSRFIA 639
                     88888866799************************************9.566779999999********************************** PP

                     HHSB-SSTT-BSSTTTSSTTHHHHHHHHHTEE-SSTTS-EEEE---SSSEEEEE-....GGG-EEEEE-TT-BTTB-EEEEEEETTEE---.EEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
  Glyco_hydro_92 357 delynntpdGlpGndDaGqmsawyvfsalGlYpvapgspeyllgsPlfekvtirl....engktltieaknnsaenvyvqsvtlnGkplkk.wlt 446
                     +++y+ +p+GlpGn+DaG+m++wy++s++GlYpv  +++++l+ sP+++++ti+l    +  kt++i+ ++      yv+s+++nG++++k wlt
      KKY21970.1 640 RSYYSLSPSGLPGNSDAGAMQSWYLWSVIGLYPV-TAQTTFLIASPWYDDLTISLsdsdSGSKTVKITRSGPG--D-YVRSLKVNGQQWNKaWLT 730
                     **********************************.********************999777789999555444..5.************888*** PP

                     HHHH.HT-EEEEEEEE CS
                     xxxx.xxxxxxxxxxx RF
  Glyco_hydro_92 447 hedi.akGgtLefelg 461
                     ++d+  +Gg++ef+++
      KKY21970.1 731 WDDVfKDGGSMEFVME 746
                     *665268*******97 PP

>> Glyco_hydro_92N  Glycosyl hydrolase family 92 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.5   8.8   3.1e-54   2.7e-50       1     237 []      28     267 ..      28     267 .. 0.91

  Alignments for each domain:
  == domain 1  score: 171.5 bits;  conditional E-value: 3.1e-54
  Glyco_hydro_92N   1 yVnpliGTgggghtfpgat.lPfGmvklspdtrenwdsqagYeyddssitgFshthlsGtggg.dlgdvslmPttgevkldpgkkkkdkeeyrs 92 
                      yV+p+ GT++gg++fpg+   P+ +vk++pd+ ++++ ++gY+ + ++itgFs++h+ Gtgg+ ++g v+++P++g+++ +p     +++ y  
       KKY21970.1  28 YVQPFYGTQNGGNMFPGVVpAPWSVVKVGPDVYTGSNEYSGYA-STGNITGFSLMHETGTGGApKYGTVAQLPVAGNIS-NP----LSDSLY-L 114
                      9****************9846**********************.88*******************************98.22....334444.4 PP

  Glyco_hydro_92N  93 rfskedetaspgyYsvtlddygikaelTateragllrftFpkgkeanilvdlsdsl.ssd.......kvsngsikvvddreisGyrtsrg.fgl 177
                      +   +d++as+g Y++++++ g+ ++l+ t++ag+++++Fp+g  an+l+d+s+ l +         ++ ngsikv+ d++++G++t++g ++l
       KKY21970.1 115 PR-SSDDEASVGWYKTSISN-GVVTQLAGTKHAGFFKYSFPSGIPANVLIDVSHYLpD-FrgmgweqNYVNGSIKVAADGHYEGSGTYNGgWNL 205
                      43.4689*************.**********************************944.359******************************** PP

  Glyco_hydro_92N 178 agsykvYfvarfskpfksfgvwkggevt.....egaksasgkelgayvsFdtkegetvevrvGiS 237
                      a+++++Yf+  f+ + ++++++ g+++t     ++++++ + +lga+ sF++   +tv++rvGiS
       KKY21970.1 206 APDWTIYFCGYFESNSSNIQTFYGTNTTlsyygKQSTQSGTGRLGAVYSFSK---STVTSRVGIS 267
                      **********************877777789876666666669*********...*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.35s 00:00:01.04 Elapsed: 00:00:00.54
# Mc/sec: 4329.65
//
Query:       KKY21971.1  [L=605]
Description: putative mitochondrial gtpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-35  122.3   0.0    2.4e-35  121.3   0.0    1.5  1  TrmE_N        GTP-binding protein TrmE N-terminus
    8.5e-31  107.7   0.0    4.7e-30  105.3   0.0    2.0  1  MnmE_helical  MnmE helical domain
    1.3e-17   63.9   0.0    2.2e-17   63.2   0.0    1.4  1  MMR_HSR1      50S ribosome-binding GTPase
    4.6e-05   23.0   0.0      0.004   16.7   0.0    2.2  2  GTP_EFTU      Elongation factor Tu GTP binding domain
    0.00029   20.9   0.0    0.00059   19.9   0.0    1.6  1  Dynamin_N     Dynamin family
    0.00047   19.7   0.1     0.0042   16.6   0.0    2.2  2  FeoB_N        Ferrous iron transport protein B
  ------ inclusion threshold ------
      0.043   14.3   0.0       0.12   12.9   0.0    1.7  1  ABC_tran      ABC transporter
      0.098   12.4   0.0       0.24   11.1   0.0    1.6  2  AAA_24        AAA domain
      0.099   12.5   0.0          2    8.3   0.0    2.2  2  RsgA_GTPase   RsgA GTPase


Domain annotation for each model (and alignments):
>> TrmE_N  GTP-binding protein TrmE N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.3   0.0   1.2e-38   2.4e-35       1     115 []      22     149 ..      22     149 .. 0.90

  Alignments for each domain:
  == domain 1  score: 121.3 bits;  conditional E-value: 1.2e-38
                 -EEEE-S-SSS-SEEEEEEESTTHHHHHHTTEEE..T--CTEEEEEEEECT......TCEEE.EEEEEEEBTTCSTTSSEEEEEEEESSHHHHHHHHHH CS
      TrmE_N   1 TIaAlatpagkgaiaiiRvsGpkaleiakklfkk..elkprkallgklvdee....ekevlD.evlvlvfkaprsyTgedvvElhlhGgpavvkavlea 92 
                 TI+Al+t++g++aia+iR+sGp++l+i++ l+     ++pr+a+l++l++++    +  vlD ++lvl+f++p++ Tgedv+Elh+hGg+a+v+avlea
  KKY21971.1  22 TIYALSTASGRAAIAVIRISGPACLKIYQGLCPGkpLPRPRTAILRRLHKPKdassGPVVLDsSALVLYFSSPHTATGEDVLELHVHGGNAIVRAVLEA 120
                 9****************************997765567799*******9888888778899*99*********************************** PP

                 H......HCTT-EE--CTHHHHHHHHTTS CS
      TrmE_N  93 l......lkagarlAepGEFtkRaflngk 115
                 +       ++++r+AepGEFt+Raf+n++
  KKY21971.1 121 IpecgrsSSTSIRYAEPGEFTRRAFYNER 149
                 *66555434489***************97 PP

>> MnmE_helical  MnmE helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.3   0.0   2.4e-33   4.7e-30       1     206 []     152     602 ..     152     602 .. 0.80

  Alignments for each domain:
  == domain 1  score: 105.3 bits;  conditional E-value: 2.4e-33
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxx RF
  MnmE_helical   1 LtqaEavadlIdAeteaaakaalrqleGelskkikelrekllellaeleaaiDFpeed.leelsee......elaekleelkeelekllatakrgel 90 
                   Ltq+Ea+ d+  +ete+++++a++  e +l  +++++r+ ll ++ elea iDF+e++  +e   +      +++ ++ +lk++le ++ +a +gel
    KKY21971.1 152 LTQVEALGDILVSETEQQRRLAVSGSESSLGARYEDWRKMLLYARGELEALIDFSEDQhFDE---SpatfmtSISGQILKLKHQLELHITNASKGEL 245
                   9*******************************************************662444...2346999************************* PP

                   xxxxxx........................................................................................... RF
  MnmE_helical  91 lreGik........................................................................................... 96 
                   lr+Gi+                                                                                           
    KKY21971.1 246 LRNGINlallgapnagkssllnciagrdaaivsseagttrdivdvgvdiggwycklgdtaglrnafsssttvtpgsiigeieregirrakaraldsd 342
                   ************************************************************************************************* PP

                   .......................................................................................xxxxxxxxxx RF
  MnmE_helical  97 .......................................................................................Dllkekeeke 106
                                                                                                                    
    KKY21971.1 343 vivavlsietgdrpnsgpflhiepevasaieqckengkmiivavnkidllasssnpanpgtrddiltqlsklnspsiqpsplstlltS--------- 430
                   ***********************************************88888888888888884444444444444444444444440......... PP

                   xxxxx..................xxxxxxxxxxxxxxxxxxx.xx.x.xxx.xx................................xxxxxxxxxxx RF
  MnmE_helical 107 eeevl..................kiSaktgegieeLeeaike.le.l.eei.ee................................eplltnaRhke 149
                       +                  + S  +  +i++L++ + e ++ l +   ++                                ++l +++R+ +
    KKY21971.1 431 ----IppsrivpischqasssipSSSSSDPGNIQHLLQSLLEtFTdLtT-PsTDavidisignktddssitiappyssidpftywsHSLSVSHRQAT 522
                   ....044444444444444433333333323377777777664443331.1222455566666677777777777777777777878********** PP

                   xxxxxxxxxxxxxxxxxxx..x.......xxxxx..xxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxx RF
  MnmE_helical 150 alekalealeeakealeag..l.......pldlv..aedLrealeaLgeItGev............vtedlLdeIFskFC 206
                    l+++l +l++ +e ++ +  +       + d+v  ae+Lr+a++ L +ItG++            ++ed+L+ +F+kFC
    KKY21971.1 523 NLRQCLYHLNDYLEVARIDdsTsepdietDIDIVasAEHLRHAANCLAKITGRTsggndgsgsgagDVEDVLGVVFEKFC 602
                   *********555554332211234445447788899***************99834444443333358************ PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.0   1.1e-20   2.2e-17       2     114 .]     252     388 ..     251     388 .. 0.83

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 1.1e-20
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGC..............SSHHHHHHHHHHHHHHHHCTSEEEEEEET CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGl..............iegaseekglgkaflaleeadlillvvda 85 
                  a++G pN+GKS+L+n + g+ +aivs+++gtTrdi+   v+++g  ++l Dt+Gl              i g+ e++g+++a ++  ++d+i+ v+++
  KKY21971.1 252 LALLGAPNAGKSSLLNCIAGRdAAIVSSEAGTTRDIVDVGVDIGGWYCKLGDTAGLrnafsssttvtpgsIIGEIEREGIRRAKARALDSDVIVAVLSI 350
                 699*****************9789*******************9999********98888888877666633677788*******************99 PP

                 T..........TTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  86 s..........eeklkpldeeleelleeakkplilvlnk 114
                 +            +++p+  +  e  +e++k +i+++nk
  KKY21971.1 351 EtgdrpnsgpfL-HIEPEVASAIEQCKENGKMIIVAVNK 388
                 988877655442.35555444444446688999999998 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.016        32       4      32 ..     250     278 ..     247     291 .. 0.79
   2 !   16.7   0.0     2e-06     0.004      93     143 ..     340     400 ..     331     472 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.016
                 EEEEEEESTTSSHHHHHHHHHHHTTSSCH CS
    GTP_EFTU   4 rnigiighvDhGKtTLtdrLlyktgaisk 32 
                 +n++++g  ++GK++L+ ++  +  ai +
  KKY21971.1 250 INLALLGAPNAGKSSLLNCIAGRDAAIVS 278
                 799****************9877666655 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2e-06
                 T-SEEEEEEETTTB..........STHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHH CS
    GTP_EFTU  93 vlDgavlvvdaveG..........vepqteevlrlalkegvpiivfiNKmDrlkaelkeiv 143
                   D+ v v++++ G          +ep     +++++++g  iiv++NK+D l ++ +   
  KKY21971.1 340 DSDVIVAVLSIETGdrpnsgpflhIEPEVASAIEQCKENGKMIIVAVNKIDLLASSSNPAN 400
                 57999999****99999999********************************944443333 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0     3e-07   0.00059       2      38 ..     253     290 ..     252     352 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3e-07
                 EEEEBTTTTHHHHHHHHHTS--S---SS.S---S-EEE CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilprgpn.ptTrrplel 38 
                 a++G+ ++GKSS+ln + g+d   ++++  tTr ++ +
  KKY21971.1 253 ALLGAPNAGKSSLLNCIAGRDAAIVSSEaGTTRDIVDV 290
                 789******************99876663788888766 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.1e-06    0.0042       2      53 ..     251     303 ..     250     351 .. 0.79
   2 ?    0.3   0.0      0.22   4.3e+02     100     120 ..     374     394 ..     370     400 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.1e-06
                 EEEEEESTTSSHHHHHHHHHTTSEE.EEESTTSSSEEEEEEEEETTEEEEEEE CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqk.vgNwpGvtvekkegklklkgkeveivD 53 
                 ++al+G pn+Gk++l+n ++g +   v+  +G+t +   + +++ g  +++ D
  KKY21971.1 251 NLALLGAPNAGKSSLLNCIAGRDAAiVSSEAGTTRDIVDVGVDIGGWYCKLGD 303
                 689******************98652566677777766666665555555555 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.22
                 HHHHTTSSEEEEEETHHHHHH CS
      FeoB_N 100 qllelgvpvvlalnmideaek 120
                 q  e g+ +++a+n+id + +
  KKY21971.1 374 QCKENGKMIIVAVNKIDLLAS 394
                 7889999**********8865 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.8e-05      0.12       9      35 ..     247     273 ..     245     289 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.8e-05
                 ETTSEEEEEESTTSSHHHHHHHHTTSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   9 kegekvaivGenGaGKStLlkllagll 35 
                 ++g  +a++G   aGKS+Ll+++ag  
  KKY21971.1 247 RNGINLALLGAPNAGKSSLLNCIAGRD 273
                 567889******************986 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012      0.24       2      49 ..     249     297 ..     248     315 .. 0.89
   2 ?   -3.7   0.0       4.1   8.2e+03     153     175 ..     542     564 ..     533     577 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
      AAA_24   2 klkiliyGpsgiGKTtlakel.gpkplfidtekGlksldadkfpdiesw 49 
                 ++++++ G + +GK++l++ + g +++++  e+G+ +  +d ++di +w
  KKY21971.1 249 GINLALLGAPNAGKSSLLNCIaGRDAAIVSSEAGTTRDIVDVGVDIGGW 297
                 67899******************************99888777777655 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.1
      AAA_24 153 gkktanelkeevDlvlranlkre 175
                 ++ + + +++  D+v+ a+  r+
  KKY21971.1 542 DSTSEPDIETDIDIVASAEHLRH 564
                 56677889999999999887655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0     0.001         2     101     125 ..     251     275 ..     207     292 .. 0.83
   2 ?    1.7   0.0      0.11   2.1e+02      41      63 ..     374     396 ..     365     425 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.001
                  EEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelel 125
                    +l+G   +GKS+L+n +++++ +
   KKY21971.1 251 NLALLGAPNAGKSSLLNCIAGRDAA 275
                  46799***************98654 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.11
                  HHHHTT-EEEEEEE-GGG--HHH CS
  RsgA_GTPase  41 laeekgiepvivlnKiDlleeee 63 
                  +++e+g  +++++nKiDll +++
   KKY21971.1 374 QCKENGKMIIVAVNKIDLLASSS 396
                  67788889999*******99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.81u 0.37s 00:00:01.18 Elapsed: 00:00:00.61
# Mc/sec: 2997.69
//
Query:       KKY21972.1  [L=337]
Description: putative rrna biogenesis protein rrp36 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-39  133.5  17.2    6.6e-39  133.5  17.2    2.1  2  RRP36            rRNA biogenesis protein RRP36


Domain annotation for each model (and alignments):
>> RRP36  rRNA biogenesis protein RRP36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   1.2    0.0021        37      64     106 ..      99     137 ..      55     146 .. 0.59
   2 !  133.5  17.2   3.7e-43   6.6e-39       1     166 []     149     326 ..     149     326 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0021
       RRP36  64 elkkelkkekdkeeekeelkrelqrlesrekerekkererevl 106
                 + k+   k ++ + +++  +++lq l+s++++  ++++ ++ +
  KKY21972.1  99 TNKR---KHSS-TTQNQSYQEKLQDLRSKLRKTTSESKLSRNK 137
                 2222...2222.5566666777777777666666665555444 PP

  == domain 2  score: 133.5 bits;  conditional E-value: 3.7e-43
       RRP36   1 rkskhaPtevsskkpvsrkrevv.kvkkkksrDPRFdsls...geldedlfeknYaFLdeyrekEleelkkelkkekd....k...eeekeelkrelqr 88 
                 r+skhaPt +ssk++vsrkr +  + ++ ksrDPRFd+++   ++ +++ ++k+Y+FL++yr++E++ l+ ++k  ++    +   ++    lkr+l++
  KKY21972.1 149 RTSKHAPTIQSSKHAVSRKRPIFsPPPSLKSRDPRFDPTVtssSSSQAQSANKAYSFLNTYRDTEITSLRTQIKSLTSnpkfQaqgPSLLPSLKRQLDS 247
                 89*******************9766679999********9665577889999**********************5444333314458888********* PP

       RRP36  89 lesrekerekkererevlkelkkeekekvkegkk..pfflkksekkklllkekfeelkkkkklekaierkrkKnasKekk 166
                 l s++    kk+  +++l+++k++ek++++egkk  pf++kk +++k++ + + e l +kkk+ek  +rkrkK+ +Ke k
  KKY21972.1 248 LVSQQSLSTKKQLTSQILRDHKQKEKQAIREGKKstPFYMKKGDVRKEVNRLRLEGL-GKKKREKSEKRKRKKERGKEMK 326
                 *********************************************************.********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2532  (0.141224); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:00.52
# Mc/sec: 1964.82
//
Query:       KKY21973.1  [L=104]
Description: putative dna-directed rna polymerase i and iii 14 kda polypeptide [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-31  107.2   0.0    3.1e-31  107.0   0.0    1.1  1  RNA_pol_L_2  RNA polymerase Rpb3/Rpb11 dimerisation domain
    2.1e-12   46.3   0.0    2.9e-12   45.8   0.0    1.2  1  RNA_pol_L    RNA polymerase Rpb3/Rpb11 dimerisation domain


Domain annotation for each model (and alignments):
>> RNA_pol_L_2  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0   0.0   3.5e-35   3.1e-31       4      74 ..      19      89 ..      16      90 .. 0.96

  Alignments for each domain:
  == domain 1  score: 107.0 bits;  conditional E-value: 3.5e-35
                 EEEES--HHHHHHHHHHHTTSTTEEEEEEECSSTTTSEEEEEEEESTSS-HHHHHHHHHHHHHHHHHHHHH CS
  RNA_pol_L_2  4 feingEDhTLgnlLrhlllknpsVefagYkipHPlepkmnlriqtkssnnpleaLkkalkdlldicdelee 74
                 + i+gEDhTLgn+Lr++++knp+Vef+gY+ipHP+ep mn+riqt +++++ eaL k+l+dl++ cd + e
   KKY21973.1 19 VIIEGEDHTLGNALRYIVMKNPKVEFCGYTIPHPSEPYMNIRIQTFDDYSAYEALDKGLSDLMEACDVVTE 89
                 579****************************************************************9876 PP

>> RNA_pol_L  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   3.2e-16   2.9e-12       3      69 .]      20      84 ..      19      84 .. 0.92

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 3.2e-16
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   RNA_pol_L  3 llrgvdhtlgNaLRrillsevpgvaiea........pvvkvntdkdklilevetdgslkPeealkeAlkiLkekl 69
                 ++g+dhtlgNaLR+i + ++p+v++++        p          ++++++t   ++++eal ++l +L+e +
  KKY21973.1 20 IIEGEDHTLGNALRYIVM-KNPKVEFCGytiphpsePY---------MNIRIQTFDDYSAYEALDKGLSDLMEAC 84
                589***************.*********9996655555.........*************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.49
# Mc/sec: 636.47
//
Query:       KKY21974.1  [L=130]
Description: putative nadh-ubiquinone oxidoreductase b14 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-07   30.2   0.9      9e-07   29.6   0.9    1.4  1  Complex1_LYR_2   Complex1_LYR-like
    0.00028   20.9   0.4    0.00061   19.8   0.4    1.7  1  Complex1_LYR     Complex 1 protein (LYR family)
  ------ inclusion threshold ------
      0.053   13.6   0.1       0.36   10.9   0.1    2.1  2  IKKbetaNEMObind  I-kappa-kinase-beta NEMO binding domain


Domain annotation for each model (and alignments):
>> Complex1_LYR_2  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.9   1.5e-10     9e-07       1      60 [.      32     107 ..      32     124 .. 0.67

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.5e-10
  Complex1_LYR_2   1 vlsLYrrllrelrelppelr......slgdayvraefrrhk...........hlknpeeialflknqreYaellery 60 
                     v++ Yr++lr+ +e +++++      s ++++vr++f+rh+             + ++e+++ l+ +++ ++ ++++
      KKY21974.1  32 VRKSYREWLRASPE-IQTMYslnmpvSSIRTKVREQFERHRyvnqlkvvdvlLFQSHAEYQETLNYWKQLNHVMKYF 107
                     7899********95.56666677779*************99555555555533334445555555555555555555 PP

>> Complex1_LYR  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.4     1e-07   0.00061       2      50 ..      31      83 ..      30      95 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1e-07
  Complex1_LYR  2 qvLsLYRalLRearkfpdyn....treyfrrriRdeFrknkhvtDpekieell 50
                  +v + YR +LR++  ++       +   +r ++R++F++++ v+  + +  ll
    KKY21974.1 31 RVRKSYREWLRASPEIQTMYslnmPVSSIRTKVREQFERHRYVNQLKVVDVLL 83
                  66777******885555544566899999*************99888776664 PP

>> IKKbetaNEMObind  I-kappa-kinase-beta NEMO binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.18   1.1e+03       6      15 ..      68      77 ..      67      79 .. 0.86
   2 ?   10.9   0.1     6e-05      0.36       5      25 ..      91     111 ..      90     114 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.18
  IKKbetaNEMObind  6 EnqnyLsqLt 15
                     E ++y +qL 
       KKY21974.1 68 ERHRYVNQLK 77
                     789*****96 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 6e-05
  IKKbetaNEMObind   5 eEnqnyLsqLtslmqettkeq 25 
                      +E++ny +qL+++m+ ++ke 
       KKY21974.1  91 QETLNYWKQLNHVMKYFRKEE 111
                      7**************999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1055  (0.0588432); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 895.10
//
Query:       KKY21975.1  [L=191]
Description: putative 66s preribosome component loc1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
        7.3    6.3  16.6        9.9    5.9  16.6    1.3  1  RR_TM4-6       Ryanodine Receptor TM 4-6


Domain annotation for each model (and alignments):
>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  16.6   0.00055       9.9      30     146 ..      36     167 ..       8     189 .. 0.52

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.00055
                 XXXX...XXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXX.................XXXXXXXXXXXXXXXXXXX. CS
    RR_TM4-6  30 dlaeaageeeeedllsdvfgldlkkeggqykvvakkseagLgDlseteaeesptpelkkkla.................eeeeaeeekeeeeepeaeae 111
                   +++  +e ++   +++ g+++kk ++  + v++++e gL  l   +++  ++p  kkk +                  e+e + e +  + ++ e++
  KKY21975.1  36 AGSRPPPKEVKKRPGVHAAGIEKKKRKK--ERVYTDKELGLPALNMITPAGVQKPRGKKKGKifvddqesmmtilamvnAEKEGQIESKVMKARQLEEI 132
                 3333444555555566778997666666..568999999************999999999888999987665554444322222222222222222222 PP

                 XXXXXXXXXXXXXXXX..........XXXXXXXXX CS
    RR_TM4-6 112 ekadaengekeekekekeeeekeseeeeeekkkkk 146
                 ++a++++ e+++++k+++ e+++++ + ++k+k +
  KKY21975.1 133 REAKRKEAEARHEHKKSKFEATKESLKRKKKSKGS 167
                 22222222222222221222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2260  (0.126053); expected 358.6 (0.02)
Passed bias filter:                      626  (0.0349155); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 1274.20
//
Query:       KKY21976.1  [L=420]
Description: putative alpha beta fold family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-09   37.3   0.0    3.7e-09   36.6   0.0    1.5  1  Abhydrolase_1  alpha/beta hydrolase fold
    1.2e-06   28.0   0.0    2.2e-06   27.2   0.0    1.6  1  Hydrolase_4    Serine aminopeptidase, S33
    0.00025   20.4   0.0    0.00043   19.7   0.0    1.2  1  DUF915         Alpha/beta hydrolase of unknown function (DUF9


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   6.1e-13   3.7e-09       1      95 [.     184     286 ..     184     404 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 6.1e-13
                    SEEEEE-STTTCGGG......GTTGHHHHHHHHT.......TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHH CS
  Abhydrolase_1   1 pvlvilhGlpgssdv......waerglapaLakd.......gfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmG 83 
                    p lv+lhGl g+s+              p    +       +++ +++++rG++ S+  ++   +   t++v+ ++++++++++ ++l  vG+S+G
     KKY21976.1 184 PMLVVLHGLSGGSHEiylrhvL-----YPLVYPSdssptrqKWEACVINSRGCAGSKITSNILYNARATWDVRQVVRWLKERYPKRPLFGVGFSLG 274
                    679********77774443332.....33333335668899*******************9888888***************************** PP

                    HHHHHHHHHHHG CS
  Abhydrolase_1  84 Gmialayaaeyp 95 
                      i ++y+ e  
     KKY21976.1 275 ANILTNYLGEEG 286
                    ********9883 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   3.6e-10   2.2e-06      57     119 ..     245     311 ..     217     404 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 3.6e-10
  Hydrolase_4  57 dyvdDlaafvekvkeehpelplfllGhSmGGliallyl..lrypd..kva.glilsaPalkikaklk.a 119
                  + + D++++v+ +ke++p++plf +G S+G+ i ++yl  +   +   ++ +li+s+P+   +a+l+  
   KKY21976.1 245 RATWDVRQVVRWLKERYPKRPLFGVGFSLGANILTNYLgeE--GSqcPLQaALIISSPFNLEAASLSlQ 311
                  5567**********************************643..443478889******97666555333 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   7.2e-08   0.00043      89     187 ..     250     345 ..     238     348 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 7.2e-08
      DUF915  89 lkkvlseLkkkYnikkfnavGhSmGglaltsYleeyaddkslPqlkklvtiggpfngienndedetlaqvkkdg.pkkktqaykkllknqkkkipkdle 186
                 + +v+  Lk++Y    +  vG+S G+  lt Yl e +++    +l+  + i +pfn +     + + ++v  +   +++   +kkl++ + ++i ++++
  KKY21976.1 250 VRQVVRWLKERYPKRPLFGVGFSLGANILTNYLGEEGSQC---PLQAALIISSPFNLEAAS-LSLQSTFVGLNIySRAMGSNMKKLIDRHSREITQNTK 344
                 689999****************************999998...78***********99777.566777777777799*****************99999 PP

      DUF915 187 v 187
                 v
  KKY21976.1 345 V 345
                 8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.53
# Mc/sec: 2385.29
//
Query:       KKY21977.1  [L=234]
Description: putative rna binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-62  210.0   0.0    2.8e-62  209.6   0.0    1.1  1  PRP38     PRP38 family


Domain annotation for each model (and alignments):
>> PRP38  PRP38 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.6   0.0   1.6e-66   2.8e-62       3     172 ..      22     184 ..      21     186 .. 0.98

  Alignments for each domain:
  == domain 1  score: 209.6 bits;  conditional E-value: 1.6e-66
       PRP38   3 lngqnptlliekivrerIleseYykenlfglkalaelvdeiveklkhieglvlggtekpstflClllKLlqlkptkkqieelln..nedskYiralgll 99 
                 ++g np++l+e++vr+rI++s Y+ke++fgl+a a+l+d++v+ +++i+g ++g   kp++flCl++KLlql p+k++i e+l+   e++kY+ral+++
  KKY21977.1  22 IRGANPATLLETAVRDRITDSLYWKEQCFGLNA-ATLLDRAVD-MTYIGG-TYGIGMKPTPFLCLIFKLLQLTPSKEIIIEYLRmgGEEFKYLRALAVF 117
                 7899*****************************.*********.******.*********************************9999*********** PP

       PRP38 100 YlRlvlepkelykllepllnDyrklkrrekdgevdpkgvklitidelvddLltkdricgtiLprlpkraklee 172
                 Y+Rl+++++e+y++lep+l+Dyrklkrr+k+g      ++l+++d++vddLltkdr+c+t+L++lp+r+ le+
  KKY21977.1 118 YIRLTFDAVEIYTVLEPYLTDYRKLKRRRKEG------YELTYMDQFVDDLLTKDRVCATSLWKLPARQALED 184
                 ********************************......*******************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 1452.13
//
Query:       KKY21978.1  [L=409]
Description: putative monooxygenase fad-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-23   81.5   0.2    8.1e-23   81.2   0.2    1.1  1  FAD_binding_3   FAD binding domain
    1.2e-06   28.4   3.9    0.00034   20.3   1.2    2.2  2  DAO             FAD dependent oxidoreductase
    9.7e-06   25.7   0.4    2.1e-05   24.7   0.4    1.6  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    1.7e-05   24.3   0.3      0.055   12.7   0.0    2.6  3  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    0.00013   21.4   1.0    0.00091   18.5   0.4    2.4  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0019   17.4   0.7     0.0033   16.5   0.7    1.4  1  FAD_binding_2   FAD binding domain
     0.0048   15.8   5.4      0.015   14.2   0.4    2.5  3  Trp_halogenase  Tryptophan halogenase
     0.0064   15.8   0.1       0.01   15.1   0.1    1.3  1  Thi4            Thi4 family
  ------ inclusion threshold ------
      0.019   15.5   4.0       0.16   12.6   0.1    3.2  3  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      0.036   12.8   0.7       0.19   10.4   0.2    2.1  2  HI0933_like     HI0933-like protein
      0.048   12.7   0.6       0.09   11.8   0.6    1.6  1  GIDA            Glucose inhibited division protein A
      0.063   12.6   0.4        0.1   11.9   0.4    1.4  1  FAD_oxidored    FAD dependent oxidoreductase
      0.097   12.0   0.2       0.21   10.9   0.2    1.5  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
       0.11   12.1   0.3       0.27   10.9   0.4    1.7  1  ApbA            Ketopantoate reductase PanE/ApbA
       0.14   11.7   0.0       0.31   10.7   0.0    1.5  1  DUF4218         Domain of unknown function (DUF4218)
       0.17   11.9   0.0       0.35   10.9   0.0    1.5  1  CtaG_Cox11      Cytochrome c oxidase assembly protein CtaG/Co
       0.19   11.6   0.8        1.4    8.8   0.2    2.3  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.2   7.7e-26   8.1e-23       3     343 ..       6     344 ..       4     350 .. 0.80

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 7.7e-26
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHHCHHCST- CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdtpkaradlelessper 98 
                    +VlI GaG aG ++a  Ls+aG rv++ve+ s    ++++  +    + +++ +Gle +++a+ +++++++++ +++   t ka   ++  +s ++
     KKY21978.1   6 SVLITGAGIAGPTAAFWLSRAGFRVTVVERASGIRATGQSVDIRGHGLTVIQRMGLETNVRAKSTQEQGIRFVDKKN---TCKAAFPVNDGFSFTS 98 
                    69**************************************************************9999888777776...5444444553799999 PP

                    CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEEEEEEEEC CS
  FAD_binding_3  99 vtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvldvlfda 194
                       +   el +i +e+ +++ ++  f+++v ++ ++++ vt e+ + ++ +      + +++aDG  St+r+ +  +   ++ v  +g   v f+ 
     KKY21978.1  99 DIEIMRGELAQIFYEA-TNEEVEYIFGEQVGAISETQDAVTIEFANGASPRS----VDIVIAADGWASTTRAIAFGD-WQKNAVHSLGEWAVWFTI 188
                    999999********99.9999***********************99976555....788*********998765544.444446677888888887 PP

                    -SCCCTTC.CEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGS...CCCHHHHHHHHHHHHHHTTSSCEE.....EEEEEEEEEEEEEEESSS CS
  FAD_binding_3 195 dlsdivep.lvlilsaesrgvmviPlentlerfyvqvearaekeer...sekfteeevkarlreivgektldv.....eieevsawtvaqrvaeky 281
                    + +++      +  ++  r++ ++P + + +r+ + +++++e+ ++   +   ++++++++l e  g++  +      + +++   ++aq   +++
     KKY21978.1 189 PWEKTDTAwARWYNAPRGRIFFLRPDSAECTRAALRIKTSDERLDKvsrKSVDEQKHLITHLVEDAGWEGPRIikgmyQATDFYMQKIAQIKLKHW 284
                    66655555778999**************77777777777776666633122233456777777777776544322123555566667888999*** PP

                    EETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHH CS
  FAD_binding_3 282 rkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaq 343
                    +kgr  ++GDA  + +P+ G+G  +ai  a+ La  +aa       ++  ++Ye++ +  ++
     KKY21978.1 285 SKGRTVVVGDAGYCPSPMSGMGTTVAIVGAYVLAGEIAANPG--NHPAAFEAYERKMQSLVK 344
                    ************************************999766..566777777777666655 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   1.2   3.2e-07   0.00034       2      36 ..       7      44 ..       6      54 .. 0.86
   2 !    8.8   0.1     0.001       1.1     115     291 ..      77     246 ..      43     308 .. 0.57

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.2e-07
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTS.SG CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllekgdiags.ga 36
                v+i G+Gi+G ++A++L+r+g  Vt++e+++ +   g+
  KKY21978.1  7 VLITGAGIAGPTAAFWLSRAGfrVTVVERASGIRAtGQ 44
                8999**************************76652244 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.001
                 EEEH.HHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE..EECTEEE.EEEEE..EEE--GGGHHHH CS
         DAO 115 llda.eevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgve..rttpgen.daada..vVnaaGawsdll 207
                 ++d+ + +++ +p    +  ++ ++++  +   +l+  +  +a +  ve ++g++v +++e++ +++++e  +   g+  +      +V+aa  w++ +
  KKY21978.1  77 FVDKkNTCKAAFP----VNDGFSFTSDIEIMRGELA-QIFYEATNEEVEYIFGEQVGAISETQ-DAVTIEfaN---GASpR---SvdIVIAADGWASTT 163
                 5666434555555....3344444443444444444.4455667778*********99*7754.456775554...76533...335888888898744 PP

                 HTT..CTT...TSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEE.....TTSEEEEEESSEEETTCSSTSCSHHHHHHHHHH CS
         DAO 208 gll..kel...dlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtpr.....kdgrvlvGgtadeesgdddpevdeedidellea 291
                 + +  ++     +   +  +  +++ p+++ +    a + ++ +  +gr ++++p+     +   +++ ++++      d +v+ + +de  + 
  KKY21978.1 164 RAIafGDWqknAVHSLGEWAVWFTI-PWEK-T--DTAWARWY-NAPRGRIFFLRPDsaectR-AALRIKTSDE----RLD-KVSRKSVDEQKHL 246
                 3333333321112224444444555.5544.2..22444444.6677778888887333321.2344544442....222.4444444444444 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.4   1.9e-08   2.1e-05       1      42 [.       9      50 ..       9      69 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.9e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETT CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpg 42
                   I GaG++G +aA  L++agf+v+++e+++++    +s+++ g
     KKY21978.1  9 ITGAGIAGPTAAFWLSRAGFRVTVVERASGIRATGQSVDIRG 50
                   56**************************99987777777655 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00075      0.79     164     213 ..       4      51 ..       1      92 [. 0.76
   2 !   12.7   0.0   5.2e-05     0.055     218     275 ..     111     167 ..     100     181 .. 0.83
   3 ?   -2.6   0.0       2.4   2.5e+03     163     192 ..     305     334 ..     295     348 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00075
  Pyr_redox_3 164 gqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpd 213
                  ++ v++ G++  +  aA+ l r+g +Vtvv r s i+++ +  s+ ++ +
   KKY21978.1   4 TKSVLITGAGIAGPTAAFWLSRAGFRVTVVERASGIRATGQ--SVDIRGH 51 
                  67899999999999999999999999999999999988764..4445555 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 5.2e-05
  Pyr_redox_3 218 leelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflk 275
                  + e+ + e+++ +f ++v +i+e++  +++++++g + ++ d v++a G+ ++++ ++
   KKY21978.1 111 FYEATN-EEVEYIFGEQVGAISETQDAVTIEFANGASPRSVDIVIAADGWASTTRAIA 167
                  444444.66******************************************9998886 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.4
  Pyr_redox_3 163 agqkvvViGgknSavDaAlelvrkgaeVtv 192
                   g+ v+++G++  a ++A +  ++ a  + 
   KKY21978.1 305 MGTTVAIVGAYVLAGEIAANPGNHPAAFEA 334
                  578899999999998888876665555555 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.4   8.7e-07   0.00091       2      58 ..       6      85 ..       5     167 .. 0.56
   2 ?   -1.8   0.0       1.4   1.5e+03     143     157 ..     287     302 ..     259     351 .. 0.61

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 8.7e-07
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEE...............TTHCHHHCSHHHHCHHHHHHHHHHHHH.................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxx.................x RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlve...............legtclnggcllskallgvaedaeias.................e 58
                 +v++ G+G+AG +aa  l++ag++vt+ve                 g          +++ +++ ++++++                 +
   KKY21978.1  6 SVLITGAGIAGPTAAFWLSRAGFRVTVVErasgiratgqsvdirGHG---------LTVIQRMGLETNVRAkstqeqgirfvdkkntcK 85
                 799*************************8755555322222222112.........233333333333333222222222444444441 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.4
                  SEEEEES.-SHHHHHH CS
                  xxxxxxx.xxxxxxxx RF
  Pyr_redox_2 143 krivvvG.gGyiGvEl 157
                   r+vvvG +Gy+ + +
   KKY21978.1 287 GRTVVVGdAGYCPSPM 302
                  4555555445544333 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.7   3.2e-06    0.0033       2      35 ..       7      40 ..       6      46 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.2e-06
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefg 35
                   v++ G+G+AG +AA  +++aG +v+vve ++  +
     KKY21978.1  7 VLITGAGIAGPTAAFWLSRAGFRVTVVERASGIR 40
                   99**************************988755 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.4   1.4e-05     0.015       2      83 ..       7      86 ..       6     145 .. 0.69
   2 ?   -2.7   0.7       1.8   1.9e+03      69      87 ..     160     178 ..     153     199 .. 0.73
   3 ?    3.6   0.0     0.022        23     312     377 ..     282     349 ..     260     352 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.4e-05
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS---SS-EE-.-THHHH.THHHHT--HHHHCHHCT-EEE-EEEEESSSS...C CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlveseeigtvgvGeat.ipsirk.llrlLgideeeflreteatfKlgikFedWgk...k 83
                    ++i G+G+aG +aA  l++a+   ++vt+ve +  g+   G++  i      + +++g++ +     ++ t  +gi+F+d ++    
      KKY21978.1  7 VLITGAGIAGPTAAFWLSRAG---FRVTVVERAS-GIRATGQSVdIRGHGLtVIQRMGLETN---VRAKSTQEQGIRFVDKKNtckA 86
                    89*******************...9******876.777778865244444358999999988...5668888999999985544331 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.8
                     -EEE-EEEEESSSSCESEE CS
  Trp_halogenase  69 atfKlgikFedWgkkgery 87 
                     a+  ++i F dW+k++ + 
      KKY21978.1 160 ASTTRAIAFGDWQKNAVHS 178
                     566789******9765443 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.022
                     -SEETT.EEE-CCCTEE--CCCS-HHHHHHHHHHHHHHT--BTT--.HHHHHHHHHHHHHHHHHHHHH CS
  Trp_halogenase 312 qawvkn.vvalGlasgfvePlestsihliqaalrrLlallpdksde.paaiaefnrevarelervrdf 377
                     + w+k+ +v +G+a     P+ + +  ++ ++++ L+  ++++  + paa + ++r++++ +++ +++
      KKY21978.1 282 KHWSKGrTVVVGDAGYCPSPMSGMGTTVAIVGAYVLAGEIAANPGNhPAAFEAYERKMQSLVKKAQKL 349
                     567765489***************************98888776666************998887665 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   9.5e-06      0.01      19      52 ..       6      38 ..       2     145 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9.5e-06
                EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS CS
        Thi4 19 DvvivGaGssGLtaayylakkpdlkvailersvs 52
                 v+i GaG +G taa+ l+++ +++v+++er   
  KKY21978.1  6 SVLITGAGIAGPTAAFWLSRA-GFRVTVVERASG 38
                699******************.********9743 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   0.00015      0.16       1      35 [.       6      40 ..       6      50 .. 0.90
   2 ?   -2.4   0.0       6.9   7.2e+03      47      61 ..      67      81 ..      50      85 .. 0.73
   3 ?    2.7   0.0      0.18   1.9e+02      50      77 ..     114     140 ..     103     144 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00015
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkll 35
                +v++ G+G  g  +A  l++ g +Vtvver++ ++
  KKY21978.1  6 SVLITGAGIAGPTAAFWLSRAGFRVTVVERASGIR 40
                689****************************9998 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.9
                HHHHHHTTEEEECSE CS
   Pyr_redox 47 qeklekngievllnt 61
                +++ +++gi+++ ++
  KKY21978.1 67 AKSTQEQGIRFVDKK 81
                455677799988766 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.18
                 HHHTTEEEECSEEEEEEEEETTSEEEEE CS
   Pyr_redox  50 lekngievllntkveeiegsedgvesvk 77 
                  +++ +e +++++v +i +++d v+ ++
  KKY21978.1 114 ATNEEVEYIFGEQVGAISETQDAVT-IE 140
                 56678****************9744.55 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00018      0.19       2      45 ..       6      52 ..       5      78 .. 0.84
   2 ?    0.2   0.0      0.23   2.4e+02     117     167 ..     112     162 ..     106     178 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00018
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS...SS-HHHHHCGGG CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekak...klgrKilisGgG 45
                 +v++ G+G AG  aA  ++++g rV+++e+a+   ++g+ + i G+G
   KKY21978.1  6 SVLITGAGIAGPTAAFWLSRAGFRVTVVERASgirATGQSVDIRGHG 52
                 699**************************986111456777777766 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.23
                  HHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----.SS- CS
  HI0933_like 117 kelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGG.lSi 167
                   e+++++v++   ++v ++++++d  ++++  ++ + ++  +v+A  G +S 
   KKY21978.1 112 YEATNEEVEYIFGEQVGAISETQDA-VTIEFANGASPRSVDIVIAADGwAST 162
                  57788999***********888888.99999888888887888776441454 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.6   8.6e-05      0.09       2      31 ..       7      35 ..       6     139 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.6e-05
                EEEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLithk 31
                v + G+G AG  AA+ ++r+G++v+ + ++
  KKY21978.1  7 VLITGAGIAGPTAAFWLSRAGFRVTVV-ER 35
                7899********************999.22 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   9.6e-05       0.1       2      32 ..       7      37 ..       6     161 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.6e-05
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveerg 32
                  v++ G+g+aG +AA    raG +v +ve+  
    KKY21978.1  7 VLITGAGIAGPTAAFWLSRAGFRVTVVERAS 37
                  99**************************976 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00019      0.21      30      68 ..       6      44 ..       2      80 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHH CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqle 68
                  vl+ G+G+aG  A+   ++ g +Vtv++  +  +   +
   KKY21978.1  6 SVLITGAGIAGPTAAFWLSRAGFRVTVVERASGIRATGQ 44
                 69*************************998765555544 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   0.00025      0.27       1      47 [.       7      50 ..       7      83 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00025
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEEETT CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknGlrltseg 47
                ++i GaG  G + a  L++ag  vt++ r      ++ +G +++++g
  KKY21978.1  7 VLITGAGIAGPTAAFWLSRAGFRVTVVERAS---GIRATGQSVDIRG 50
                689*************************987...6777777777776 PP

>> DUF4218  Domain of unknown function (DUF4218)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00029      0.31      35      63 ..     241     269 ..     224     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00029
     DUF4218  35 dvmvHLivHlvdeaklaGPvhyrnmypve 63 
                 d  +HLi Hlv++a   GP  ++ my   
  KKY21978.1 241 DEQKHLITHLVEDAGWEGPRIIKGMYQAT 269
                 5568**********************754 PP

>> CtaG_Cox11  Cytochrome c oxidase assembly protein CtaG/Cox11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00033      0.35      58      91 ..      97     130 ..      50     139 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00033
  CtaG_Cox11  58 qrslevkpGetalafytaknksdkpiigqavysv 91 
                 ++++e++ Ge+a++fy+a+n++ + i g  v  +
  KKY21978.1  97 TSDIEIMRGELAQIFYEATNEEVEYIFGEQVGAI 130
                 56899*******************9999887666 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.2    0.0013       1.4       2      36 ..       7      41 ..       6      87 .. 0.86
   2 ?    0.8   0.0      0.38     4e+02       1      44 [.     308     351 ..     308     361 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0013
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseeale 36
                v + GaG+ G   a  + +ag++V++v++++ + +
  KKY21978.1  7 VLITGAGIAGPTAAFWLSRAGFRVTVVERASGIRA 41
                6789************************9876655 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.38
                 EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagleVvlvdiseealekalekiek 44 
                 +va++Ga ++  +iaa   ++      ++++ ++l k ++k+++
  KKY21978.1 308 TVAIVGAYVLAGEIAANPGNHPAAFEAYERKMQSLVKKAQKLAR 351
                 69*************99999999999999999999888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.47
# Mc/sec: 2627.28
//
Query:       KKY21979.1  [L=467]
Description: hypothetical protein UCRPC4_g03395 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3029.12
//
Query:       KKY21980.1  [L=236]
Description: putative lysine decarboxylase-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-27   93.8   0.0    1.8e-26   92.8   0.0    1.5  1  Lysine_decarbox  Possible lysine decarboxylase
  ------ inclusion threshold ------
      0.039   13.5   1.2        1.6    8.3   0.4    2.5  3  LDcluster4       SLOG cluster4 family


Domain annotation for each model (and alignments):
>> Lysine_decarbox  Possible lysine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.0     2e-30   1.8e-26       1     131 [.      28     218 ..      28     219 .. 0.90

  Alignments for each domain:
  == domain 1  score: 92.8 bits;  conditional E-value: 2e-30
                      HHHHHHHHHHTTS-..EEEEEECCHHH.HHCC....................................................TTT-SEEEEE CS
  Lysine_decarbox   1 meavakgaleaggr..viGiipkilla.eeap....................................................neevnelviv 39 
                      m+ +a+  + ++g+  v+Giip++l++ ee                                                      + e+++++iv
       KKY21980.1  28 MGEIARTLVSLSGPsaVHGIIPRALIRtEEGYegtkvgdvgsgraygekqeervmskvaldrvtsqdsndnsrtatdpnilsitESEYGNTTIV 121
                      67777777777776679999999999955555999999999999999999999999999999999999999999999999999999******** PP

                      SSHHHHHHHHHHH......ESEEEE-S-SHHHHHHHHHHHHHHHTTSS-S.EEEEEEGGGCCHHHHHHHHHHHHTTSS-GGGGGCEEEESSHHH CS
  Lysine_decarbox  40 edmeeRkealvel......adafvilPGGiGTleElleiltliqlgkhqkvPiillnpkgyydkllefletlveegtisekareliivvddpee 127
                      +dm++Rk+ ++++      + +fv+l+GG+GTleE+ e++t+ qlg+h    i+l+n++gy+d l+e+++++v+e++++  +r++++ v+++e+
       KKY21980.1 122 PDMHTRKRLMASRviaggpGSGFVALAGGYGTLEEVAEMVTWNQLGIHGC-GIVLVNIDGYWDGLVEWVKRSVKEEFVGLGNRDILVEVQKVED 214
                      ***********98555444689**************************99.9****************************************** PP

                      HHHH CS
  Lysine_decarbox 128 vlek 131
                      v+e+
       KKY21980.1 215 VVEA 218
                      9987 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.4   0.00018       1.6      21      65 ..       3      50 ..       1      68 [. 0.79
   2 ?    3.5   0.0    0.0054        49     100     114 ..     144     158 ..     111     168 .. 0.88
   3 ?   -3.5   0.0      0.77   6.9e+03      38      54 ..     179     195 ..     172     196 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00018
  LDcluster4 21 laeelGrliAkegavlltGgrt.GvmeaaskGakeagG..ltvGilpa 65
                 a++l++++ +++++l+ Gg t G+m   ++   +  G   + Gi+p 
  KKY21980.1  3 SARALAHAMHENNIHLVYGGGTrGIMGEIARTLVSLSGpsAVHGIIPR 50
                68899999**********99988****999996666662234477766 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0054
  LDcluster4 100 viaiggrsGTlsEia 114
                  +a+ g++GTl+E+a
  KKY21980.1 144 FVALAGGYGTLEEVA 158
                 5899*********98 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 0.77
  LDcluster4  38 tGgrtGvmeaaskGake 54 
                  G  +G+ e++ +++ke
  KKY21980.1 179 DGYWDGLVEWVKRSVKE 195
                 46668999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1759.56
//
Query:       KKY21981.1  [L=269]
Description: putative proteasome component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-48  162.6   0.2    9.5e-48  162.2   0.2    1.1  1  Proteasome      Proteasome subunit
    2.1e-12   46.5   0.4    2.1e-12   46.5   0.4    2.0  2  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.2   0.2   1.1e-51   9.5e-48       1     190 []      29     215 ..      29     215 .. 0.96

  Alignments for each domain:
  == domain 1  score: 162.2 bits;  conditional E-value: 1.1e-51
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHC CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrs 99 
                 vk+G+ vvG+ ++ + vl+a kr+    +l s+ + +Ki+ iddh+gva+aGla+D+r+l+++++++    +++ygrpipv+r+v+++ +k+q  tq++
  KKY21981.1  29 VKQGSVVVGLVSRTHSVLVALKRNA--EEL-SSYQ-KKIIDIDDHLGVAIAGLASDGRVLTNFMKQQSLASKMTYGRPIPVDRIVSQIGDKAQTSTQHY 123
                 799**********************..888.9997.*************************************************************** PP

                 TTTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHH..STTBSHHHHHHHHHHHHHHHHHHBT.TSCSSEEEEEE CS
  Proteasome 100 grrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekey..kedltleeavelavkalkealerdk.lsgknievavi 190
                 g+rp+gv+ll+agvd+ g  +Ly+++psG   e   a aiG +s++a+t+le+++  + d+ +ee++++ ++alke+l +dk l+ +n +++v+
  KKY21981.1 124 GKRPYGVGLLVAGVDDAG-AHLYEFSPSGVTQEM-LASAIGARSQMARTYLERHLdeFADCGREELIKHGLRALKESLAQDKeLTVDNTSIGVV 215
                 ***************888.8**************.6*******************999******************996554499999999886 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.4   2.3e-16   2.1e-12       1      23 []       6      28 ..       6      28 .. 0.99
   2 ?   -2.1   0.8      0.36   3.3e+03       8      12 ..     147     151 ..     147     151 .. 0.95

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 2.3e-16
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YD++  tFSP+GR+fQVEYA++A
      KKY21981.1  6 YDNDAVTFSPQGRIFQVEYAQEA 28
                    **********************9 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.36
  Proteasome_A_N   8 FSPdG 12 
                     FSP+G
      KKY21981.1 147 FSPSG 151
                     9**99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.53
# Mc/sec: 1538.95
//
Query:       KKY21982.1  [L=129]
Description: putative vacuolar protein sorting 55 superfamily [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-41  141.0  10.3    1.7e-41  140.8  10.3    1.0  1  Vps55     Vacuolar protein sorting 55


Domain annotation for each model (and alignments):
>> Vps55  Vacuolar protein sorting 55
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.8  10.3   9.5e-46   1.7e-41       1     116 [.       9     126 ..       9     127 .. 0.96

  Alignments for each domain:
  == domain 1  score: 140.8 bits;  conditional E-value: 9.5e-46
       Vps55   1 iillsfvlaiGfllvilsCalyknwwpLlvvlfyllaplPnliakrlsssed..seessalkdlakFltgvlvvsgiaLpivLahagiikwgalilsla 97 
                 ii+lsfvlaiGfllvils+al+++++++lvv++y+ aplPn+i++r+++ +d  +++++++ d+++F+tg+lvv+giaLp+++ah+++i+  a+++s++
  KKY21982.1   9 IIALSFVLAIGFLLVILSAALFHSYLTFLVVATYICAPLPNWICGRCANPDDfmESAGNSVIDFGRFCTGFLVVMGIALPALFAHCHLIEVPAMVMSII 107
                 8*********************************************997765643789***************************************** PP

       Vps55  98 ggvviyltiivfflffkee 116
                 gg++iy+tii+f++ff+ee
  KKY21982.1 108 GGLLIYGTIISFTMFFQEE 126
                 ****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1042  (0.0581181); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 893.87
//
Query:       KKY21983.1  [L=251]
Description: hypothetical protein UCRPC4_g03399 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-10   38.7   0.0    1.2e-09   38.2   0.0    1.3  1  Nuc_deoxyrib_tr  Nucleoside 2-deoxyribosyltransferase
  ------ inclusion threshold ------
      0.058   12.9   0.0      0.076   12.5   0.0    1.3  1  ERAP1_C          ERAP1-like C-terminal domain


Domain annotation for each model (and alignments):
>> Nuc_deoxyrib_tr  Nucleoside 2-deoxyribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   1.4e-13   1.2e-09       2     109 ..      36     137 ..      35     183 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 1.4e-13
                      EEESGGGCSCCCHHHHHHHHHHHHTTTTEEE-CCTT-TT....--SSHHHHHHHHHHHHHC-SEEEEE--SSSSSS--HHHHHHHHHHHHCT-E CS
  Nuc_deoxyrib_tr   2 YLAgplvFrpdakalaarlkallaengldglaPldneaelelpaeetaraiyeadialirqaDavianldpfrgpeaDsGtafEvGyavalgkp 95 
                      Y Agpl F+ ++ + ++ l+++++ +  + + P+  +  le +  +  ++i ++di+ + ++D++++ +d+++    D+Gt++E  +a    +p
       KKY21983.1  36 YHAGPL-FTLAELHTNSLLAKAIKTQSSERYIPILPQD-LE-QRGTSPKSIRDQDIRALLSCDMALFTYDGTE---LDAGTVVEYMIAKMADIP 123
                      78****.**************************94443.22.45677899*********************99...********8888888899 PP

                      EEEE-S-GCGHHHH CS
  Nuc_deoxyrib_tr  96 vlayttdarelrer 109
                       ++++td+r   ++
       KKY21983.1 124 SVILRTDFRGAGDQ 137
                      9******9985554 PP

>> ERAP1_C  ERAP1-like C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.5e-06     0.076     100     174 ..     148     221 ..      83     242 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.5e-06
                 HHHHHHHHHHHHHHH.HHT.TTS-HHHHHH.HHHHHHHHHTT-HHHHHHHHHHHHHHHCSTT-S-HHHHHHHHHHHH CS
     ERAP1_C 100 kaflrklleplaekl.gwepgeshldaqlr.slllsaacaagdpevveearklfkawlegddlippdlrwavycala 174
                  +f+ +  + +++ + g+++g   l + l+ +++ ++a+ +  +e+ +++ + f++ ++ ++ +p++lr++vy  la
  KKY21983.1 148 TSFWPRTKTVILDSItGYKEG---LSRILKeENVKGLAGEYAIEETARKVIAAFDEVRNEPSRLPAELRKSVYEWLA 221
                 556556666666777577778...999999899999999***999999999999999987656**********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1747.03
//
Query:       KKY21984.1  [L=171]
Description: putative integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 1090.80
//
Query:       KKY21985.1  [L=407]
Description: hypothetical protein UCRPC4_g03401 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-05   22.4   0.0    9.1e-05   22.0   0.0    1.2  1  DUF604    Protein of unknown function, DUF604
     0.0028   17.2   0.1     0.0054   16.2   0.1    1.4  1  Fringe    Fringe-like


Domain annotation for each model (and alignments):
>> DUF604  Protein of unknown function, DUF604
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0     1e-08   9.1e-05       9     156 ..     186     335 ..     179     365 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1e-08
      DUF604   9 mafGGgGfaiSyplakaLakvldeCler.Ypkl.ygsddriqaClaelG..vpltkekGfHqvDlrgdllGlLaahplaplvslHHldavepifPkmtr 103
                 m+fGG+G+ +S +l   L  + d C       l +  d r+ +C+  +   v +t  + + q+D+rg++ G+  +     + s HH      +  ++ +
  KKY21985.1 186 MGFGGAGVFLSGALLDILDANYDVCAGEeIGGLdMPGDGRLAQCIYMVApdVFVTPWNELRQWDIRGNADGIFESG--REIWSYHHWADSGWLKTDVVK 282
                 9************************9641455545789******98885448899*****************9875..578999999998888888888 PP

      DUF604 104 lealkklvkaakldparilqqsiCydkkkkwtvsvswGyavqvyekivlarel 156
                 ++a++ +    ++  + i+++    +++k+  + +  Gy++  y+     +e+
  KKY21985.1 283 MSAVSLVAGEKSILRRWIFDRIGSKKEEKREYFVLNNGYSIAHYSLEPGVEEI 335
                 88888887777777777777777777777777888888888777655555555 PP

>> Fringe  Fringe-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   6.1e-07    0.0054      85     170 ..     135     210 ..      93     234 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.1e-07
      Fringe  85 skkkWfchvDDDnyl.nveaLlklLskynhtqdvylGkpsldrpieaterteenkkkkvkf.wfatGGaGfclsralalklaPwasgg 170
                  ++kW++++DDD++  +v+++   Ls+ +h +  y+G  s  +   +            +f w+  GGaG+ ls al   l      +
  KKY21985.1 135 PSTKWVVLIDDDTFFsSVHQIGYRLSTLDHRKPQYIGGLSEAEWQLN------------HFgWMGFGGAGVFLSGALLDILDANYDVC 210
                 345**********9835899*****************9887665555............34266688888888888877765544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2798.34
//
Query:       KKY21986.1  [L=751]
Description: hypothetical protein UCRPC4_g03402 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.48
# Mc/sec: 4734.95
//
Query:       KKY21987.1  [L=80]
Description: hypothetical protein UCRPC4_g03403 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.026   14.3   0.0      0.034   13.9   0.0    1.1  1  DivIC     Septum formation initiator
       0.16   11.9   1.2       0.31   10.9   0.5    1.8  2  Beta-APP  Beta-amyloid peptide (beta-APP)


Domain annotation for each model (and alignments):
>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.8e-06     0.034      21      64 ..      33      76 ..      21      78 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.8e-06
                HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXX.XXXX CS
       DivIC 21 qlkqeiaalqaelaklkaeneeLeaevkdLksdedyieer.ARse 64
                +l++e+ +lq +++k   ++++  +e++++ s  + +e++ AR +
  KKY21987.1 33 ALHNEMGRLQSNYDKAERRRMAISSELDKW-SAMEELEKQkARAD 76
                7899**************************.67777777537765 PP

>> Beta-APP  Beta-amyloid peptide (beta-APP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5   3.5e-05      0.31      27      39 .]      21      33 ..      14      33 .. 0.92
   2 ?   -1.3   0.0      0.23   2.1e+03       6      18 ..      44      56 ..      40      59 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.5e-05
    Beta-APP 27 AIIGLMVGGVVIA 39
                AIIG  VGGV +A
  KKY21987.1 21 AIIGTVVGGVALA 33
                9*********877 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.23
    Beta-APP  6 gyeVyheklvfla 18
                 y+  +++++ ++
  KKY21987.1 44 NYDKAERRRMAIS 56
                6888888998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.31s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 527.76
//
Query:       KKY21988.1  [L=218]
Description: putative transport protein yif1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-66  224.5   3.2    1.6e-66  224.2   3.2    1.0  1  YIF1      YIF1
    0.00072   19.3  10.0    0.00072   19.3  10.0    1.6  2  Yip1      Yip1 domain


Domain annotation for each model (and alignments):
>> YIF1  YIF1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.2   3.2   1.8e-70   1.6e-66      71     239 .]      14     200 ..       4     200 .. 0.92

  Alignments for each domain:
  == domain 1  score: 224.2 bits;  conditional E-value: 1.8e-70
        YIF1  71 eesse....ylppredvnapDLYiPlmalvtYillaglllGlqgkFspelLgikassalavvllevlilklglYllnissasslldlvaysgYkfvgvi 165
                 ++  +    +lppr+d+n+pD+YiP+malvtYill+++l+Gl+g+F+pelLg+ +++a+avv++e+++lk+++Y+lni+++s+lldl+aysgYkfvg+i
  KKY21988.1  14 TQ--QyasiFLPPRDDLNSPDMYIPVMALVTYILLSTVLAGLRGSFHPELLGSITTTAIAVVIFEIVLLKVAMYILNITNDSQLLDLMAYSGYKFVGII 110
                 22..13467**********************************************************************99****************** PP

        YIF1 166 vtlllkll.....lgeglvyylvllylvlalafFllrsLklvllpeas...........etvkksqrkkrkqflflvaavlQlllmllLt 239
                 vtl+l+++     +++gl+ +++++y++la+afFllrsLk+vllp++s           +t++k+qr++r+qflf++++v+Q+++m++L+
  KKY21988.1 111 VTLTLSEIlsggnGTGGLIGWTIFIYTFLANAFFLLRSLKYVLLPDSSsdpsmrggpssYTIAKAQRNRRTQFLFIYSYVVQFFFMWVLS 200
                 *****99977665555559*****************************9999999998777***************************95 PP

>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3  10.0     8e-08   0.00072      18     149 ..      27     146 ..      13     155 .. 0.77
   2 ?   -1.7   0.0      0.24   2.1e+03     106     116 ..     187     197 ..     168     201 .. 0.52

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 8e-08
        Yip1  18 ilrapdlallllalltlllgllaslnlgqtlasgeevqgltlssllgaiiggylglllgllllalllhliakllggkgsfkqtlsvvgyallPlilgal 116
                  l++pd++++++al+t++l+  +   l++ + ++       l+s+ +++i+ ++  ++ l +  ++l++      ++  + ++++ +gy ++ +i+ + 
  KKY21988.1  27 DLNSPDMYIPVMALVTYILLSTVLAGLRGSFHPE------LLGSITTTAIAVVIFEIVLLKVAMYILNI-----TNDSQLLDLMAYSGYKFVGIIVTLT 114
                 5779********************8888888888......56666666666666667777777777777.....6788888888888888********* PP

        Yip1 117 iaillllllgtllllvgllaliWslvllylglk 149
                 ++ +l+  +gt ++l+g+ ++i+++ + +++l 
  KKY21988.1 115 LSEILSGGNGT-GGLIGWTIFIYTFLANAFFLL 146
                 ****9999997.666666666666666666654 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.24
        Yip1 106 yallPlilgal 116
                 y++++++++++
  KKY21988.1 187 YSYVVQFFFMW 197
                 22222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1654.32
//
Query:       KKY21989.1  [L=653]
Description: putative signal sequence receptor alpha subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-70  238.0   0.0    2.7e-70  237.6   0.0    1.1  1  SRP-alpha_N  Signal recognition particle, alpha subunit, N-te
    2.2e-50  171.0   0.0    3.9e-50  170.2   0.0    1.4  1  SRP54        SRP54-type protein, GTPase domain
    3.5e-09   36.7   0.0    9.1e-09   35.4   0.0    1.7  1  SRP54_N      SRP54-type protein, helical bundle domain
      2e-07   30.3   0.0    3.8e-07   29.4   0.0    1.4  1  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
    4.2e-05   23.3   0.0      9e-05   22.3   0.0    1.5  1  AAA_30       AAA domain
      0.002   18.5   0.0     0.0058   17.0   0.0    1.7  2  AAA_16       AAA ATPase domain
     0.0053   16.7   0.1       0.12   12.2   0.0    2.3  2  AAA_31       AAA domain
      0.006   16.6   0.1       0.15   12.1   0.0    2.4  2  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
  ------ inclusion threshold ------
      0.026   14.3   0.0       0.06   13.1   0.0    1.6  1  AAA_24       AAA domain
      0.027   13.9   0.0      0.052   13.0   0.0    1.4  1  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif
      0.054   13.6   0.0       0.16   12.1   0.0    1.8  1  AAA_33       AAA domain
      0.066   12.4   0.1        3.8    6.6   0.0    2.2  2  ArsA_ATPase  Anion-transporting ATPase
       0.11   13.0   0.0       0.34   11.3   0.0    1.9  1  AAA_17       AAA domain
       0.13   12.1   0.0       0.37   10.7   0.0    1.7  1  NTPase_1     NTPase
       0.15   12.1   0.7       0.98    9.5   0.7    2.2  1  MMR_HSR1     50S ribosome-binding GTPase
       0.31   10.7   1.5       0.34   10.6   0.0    1.8  3  AAA_15       AAA ATPase domain


Domain annotation for each model (and alignments):
>> SRP-alpha_N  Signal recognition particle, alpha subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.6   0.0   2.4e-73   2.7e-70       1     290 [.      26     313 ..      26     314 .. 0.81

  Alignments for each domain:
  == domain 1  score: 237.6 bits;  conditional E-value: 2.4e-73
                  HHHHHHHHHHTTT-SS-.........----TTS----S--EEEEETTTTEEEEEE-BTTB--CHHHHHHHHHHHHHHHHHGGGGG.SS-S----TT.. CS
  SRP-alpha_N   1 spiNaLIrdvllEERsga........aasnssfkkdsytLKwtfdnelgLvFVavYqkiLhLsYvDkLLdnvkteFvdlYkpklk.pkttlvecaksy 89 
                  +++NaLI+dv++EE++ +        + ++++++ ++ytLK+t++++lgL+FVavYq++LhL++vD LLdn++t+F+++Y++kl+ p++t+ +++   
   KKY21989.1  26 NVVNALINDVFIEEKALPpahaeqgsTIRHPAYRFEKYTLKYTLVKDLGLIFVAVYQSLLHLTWVDTLLDNIQTIFTKIYHEKLEsPNATVFRYK--- 120
                  69*************877*****9887789*******************************************************8888888885... PP

                  HHHHHHHHHHHHXXXXXXXXX........XXX..XXXXXXXXXX.....XX.XX................XXXXXXX...XXXXXXXXXX..XXXXXX CS
  SRP-alpha_N  90 FdeyFdqllrelEasaeaakkskaakepkamksfeeskkskktvksskedkkpe.....gkkkkgakkekdasddstpsatpetsrpstp..sgllta 180
                  Fd+yFdq+++el a++ ++ +  +     a     + kk++  + +++ +++ +      k + ga  + ++s+ +t+ + +++srp+tp  ++l ++
   KKY21989.1 121 FDQYFDQQMQELGAEQPDSVQAAK-----A---GLSRKKEALENGDTGGPPP-PslpdlPKVQPGAVPNVKDSTLNTQMQ-SDSSRPTTPipGHLISG 208
                  ************999775533222.....2...2233444555545555544.347756555555555545455444444.589*******9999999 PP

                  X.XXX.XXXXXXXXXXXXXX..XXXXXXXXXXX....XXXXXXX..XXXXXXXXXXXXXXXXXXXX..XXXXXXXX..XXXX.XX.XXXXXXXXXXXX CS
  SRP-alpha_N 181 keagptaedvsrrarkkankkrssagassgdeakasksskkkkkkpkkkgkkaRvWdadgsadeed..kLDySapadesgae.ae.aveavdastwgs 274
                  k + +   + srrark+an+ +++++assgde     ++k+k    + ++kk+R+Wdadg ade+d  +LDySa+ ++ ++  ++  ve v+ ++ g+
   KKY21989.1 209 K-PVS-SPRGSRRARKAANAANATSAASSGDEGR---KGKTK----AVTAKKMRKWDADGLADEDDgvSLDYSADVTDGTNGfTSpPVESVSGDSFGT 297
                  9.333.69***********887777799999953...33333....5799**************999*******987776665449************ PP

                  XX.XXXXXXXXXXXXX CS
  SRP-alpha_N 275 ktdkgefvlkdlddee 290
                  +t+kgefvlkdl+de+
   KKY21989.1 298 RTKKGEFVLKDLGDEV 313
                  **************97 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.2   0.0   3.4e-53   3.9e-50       2     195 ..     444     652 ..     443     653 .] 0.90

  Alignments for each domain:
  == domain 1  score: 170.2 bits;  conditional E-value: 3.4e-53
                 EEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHH..........TTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEE CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaek..........lgvpvikkkeeadpaavakeavekakeekidvvlvD 90 
                  vi +vG++G+GK t l+K+a  l +++++vl++a+DtfR +AveQL+++ ++           +v++++k  ++d+a+vak+a++ a +ek+dvvl+D
  KKY21989.1 444 YVISIVGVNGVGKSTNLSKIAFFLLQNNYRVLIAACDTFRSGAVEQLNVHVRNlaelsarenaGHVSLYQKGYGKDAANVAKDAISFAASEKYDVVLID 542
                 6899********************************************998874444444333468888899*************************** PP

                 E--SSTTHHHHHHHHHHHHHHHSSSEEEEEEETTBHTHHHHHHHHHHHHS....SCSEEEEESTTSSS.STTHHHHHHHHHTS-EEEEE-SSSTTGEEE CS
       SRP54  91 TaGrlqndkelmeelkkikkvvkpdevllvldattgqeavkqakaFkeav....gitgviltklDgda.kgGaalsiaaelklPikfigvGekiedlee 184
                 TaGr +nd++lm+ l+k++++++pd++l+v +a++g + v+qa++F+ a     g++g+i++k+D+     G+++s+++++++P++f+gvG+++ dl+ 
  KKY21989.1 543 TAGRRHNDTRLMSSLEKFAQFAQPDKILMVGEALVGTDSVAQARNFNAAFgssrGLDGFIISKCDTVGdMVGTLVSMVHATGIPVVFLGVGQHYGDLRG 641
                 *********************************************99886444479*********975168**************************99 PP

                 --HHHHHHHHH CS
       SRP54 185 fdperlvsrll 195
                  +  + v+ l+
  KKY21989.1 642 LSVGWAVNLLM 652
                 99888887775 PP

>> SRP54_N  SRP54-type protein, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   8.1e-12   9.1e-09       4      74 ..     338     407 ..     336     408 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 8.1e-12
                 HHHHHHHHHCCSSCGHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHCTTSS-HHHHHHHHHHHH CS
     SRP54_N   4 klnsalkklsgkskideedleealkeleeaLleaDVgvkvvkklienvkkkavgekklkpkqqvkkivkde 74 
                  +++ ++++ g++++++edle  l+ +e++L+ ++V+ +++ +l+++v+ + +g kk+ + +++  +++ +
  KKY21989.1 338 AISGYFRNIVGGKTLSKEDLEKPLRSMEDHLIRKNVAREAAVRLCSSVETELIG-KKTGTFESIDTALRSA 407
                 58899*********************************************99**.9999***999999876 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   3.4e-10   3.8e-07      28     140 ..     442     554 ..     422     567 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 3.4e-10
                 -SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE-----------..------.-HCCCTSTTEEEEEE-----HHHHHHHHHHHHHHHHHTT-S CS
        MeaB  28 raqvvGltGvPGaGkstlvealglelrrrGkrvavlavDPsspftGGsi..lGDklR.leelavdegvfiRslpsrGalGGlaaktrevvllleaaGfD 123
                 r  v+ + Gv G+Gkst +++++  l ++ +rv + a D   +f  G++  l  ++R l+el++ e++   sl  +G    +a+ +++++ +  +  +D
  KKY21989.1 442 RPYVISIVGVNGVGKSTNLSKIAFFLLQNNYRVLIAACD---TFRSGAVeqLNVHVRnLAELSARENAGHVSLYQKGYGKDAANVAKDAISFAASEKYD 537
                 667999*******************************99...566677633555565578889************************************ PP

                 EEEEEEESSTTHHHHHH CS
        MeaB 124 vvlietvGvGqsevdva 140
                 vvli+t G    ++ ++
  KKY21989.1 538 VVLIDTAGRRHNDTRLM 554
                 *******9877777665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   8.1e-08     9e-05      20     124 ..     445     574 ..     438     588 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 8.1e-08
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk.......................grarlepgtllivD 95 
                 v  ++G+ G GK+t l++++  + ++++rv+++A     + +++ +l+++ +++a+l  r +                       + a+ e+ +++++D
  KKY21989.1 445 VISIVGVNGVGKSTNLSKIAFFLLQNNYRVLIAACDTFRSGAVE-QLNVHVRNLAELSARENaghvslyqkgygkdaanvakdaiSFAASEKYDVVLID 542
                 55699******************************999999988.8999999999999888899999999************99854445555****** PP

      AAA_30  96 Eagmv..dtkqlaallkaaekag.akvilvGD 124
                  ag    dt+ + +l k a+ a+  k+++vG 
  KKY21989.1 543 TAGRRhnDTRLMSSLEKFAQFAQpDKILMVGE 574
                 ***8877*************98889*****96 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       9.2     1e+04      52      88 ..     113     135 ..      99     190 .. 0.56
   2 !   17.0   0.0   5.2e-06    0.0058       8     132 ..     427     566 ..     425     576 .. 0.60

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 9.2
      AAA_16  52 ggiflrgkcdqlesaipysalaqalareellrqllde 88 
                 ++ ++r k+dq+        +       + +++l++e
  KKY21989.1 113 NATVFRYKFDQY--------FD------QQMQELGAE 135
                 455555555555........11......222222222 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 5.2e-06
      AAA_16   8 eleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala 106
                 e++  +s l++  ++rp ++ ++G  GvGKs+ + +++  l +++  +l + cd ++s+      +++l + ++ r l++ ++  ++++ +   ++ ++
  KKY21989.1 427 EIQSTTSPLSSSVKPRPYVISIVGVNGVGKSTNLSKIAFFLLQNNYRVLIAACDTFRSG-----AVEQL-NVHV-RNLAELSARENAGHVSLYQKG-YG 517
                 666667778888899999**************************9***********444.....77777.5333.333333222233333222222.22 PP

      AAA_16 107 ...................avpelagaea............srllellkrllallsr 132
                                    +                     +rl   l ++++++++
  KKY21989.1 518 kdaanvakdaisfaasekyD--------VvlidtagrrhndTRLMSSLEKFAQFAQP 566
                 23333433333333333331........03333333344456666666666666666 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00011      0.12      12      40 ..     453     481 ..     444     513 .. 0.83
   2 ?    1.8   0.0      0.18     2e+02     113     125 ..     531     543 ..     511     548 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
      AAA_31  12 GvGKTTtsvnlaaalaklgkkvLlvDlDp 40 
                 GvGK+T+  ++a +l +++++vL+  +D+
  KKY21989.1 453 GVGKSTNLSKIAFFLLQNNYRVLIAACDT 481
                 8***********************99997 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.18
      AAA_31 113 kvkdeYDyiiiDc 125
                 + +++YD+++iD+
  KKY21989.1 531 AASEKYDVVLIDT 543
                 45678*******8 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00013      0.15       9      37 ..     453     481 ..     446     502 .. 0.93
   2 ?    1.6   0.0      0.24   2.7e+02      21      55 ..     528     587 ..     520     639 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDp 37 
                 GvGK+t + ++a+ l ++++rVl   +D+
  KKY21989.1 453 GVGKSTNLSKIAFFLLQNNYRVLIAACDT 481
                 9***********************99996 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.24
                 HHHHH.TT--EEEEEEEESSCCCCHHTTEB-HHHH........................C CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................x RF
        CbiA  21 ralar.rglrVllvDaDpqannlaileglendiep........................d 55 
                 +++a  ++++V+l+D+   + n++ l+ + ++ ++                        +
  KKY21989.1 528 ISFAAsEKYDVVLIDTAGRRHNDTRLMSSLEKFAQfaqpdkilmvgealvgtdsvaqarN 587
                 45555469*******777777776666666666666666666666666665554444440 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.4e-05      0.06       2      75 ..     443     545 ..     442     555 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.4e-05
      AAA_24   2 klkiliyGpsgiGKTtlakel.......gpkplfidtek.Glksldadkfpdie.......................swedfldevvelaaeladyktl 69 
                 ++ i i+G +g+GK+t ++++        +++l+  ++   + +++  ++  ++                         +++ +++ ++ a+ ++y+++
  KKY21989.1 443 PYVISIVGVNGVGKSTNLSKIaffllqnNYRVLIAACDTfRSGAVEQLNVH-VRnlaelsarenaghvslyqkgygkDAANVAKDAISF-AASEKYDVV 539
                 68899****************999998888888876666556666666654.3335566666666666666665555333444444444.455669*** PP

      AAA_24  70 viDtid 75 
                  iDt++
  KKY21989.1 540 LIDTAG 545
                 ***986 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.6e-05     0.052       3      38 ..     446     481 ..     444     503 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.6e-05
   Fer4_NifH   3 iaiyGkGGiGksttsqnlsaalaemgkkvlivGCDP 38 
                 i+i G  G+Gkst+++ ++  l +++ +vli  CD 
  KKY21989.1 446 ISIVGVNGVGKSTNLSKIAFFLLQNNYRVLIAACDT 481
                 7899******************************95 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00015      0.16       1     100 [.     445     568 ..     445     575 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdt..........................lrrrlfgtdqqskt...........dytrvldrlyqilnel 62 
                 ++ +vG++G+GKst + +++    ++ll  ++                          +                        +++   +++ +  ++ 
  KKY21989.1 445 VISIVGVNGVGKSTNLSKIA----FFLLQNNYrvliaacdtfrsgaveqlnvhvrnlaE------------LsarenaghvslYQKGYGKDAANVAKDA 527
                 6789***********99985....44444444555555555666655554443333222............02333344444488889999999***** PP

      AAA_33  63 arkalsagrnvil.datnlsr.rer.....arflklarrlgvpvr 100
                 +  a+s++++v+l d   +++ ++r     ++f ++a+    p++
  KKY21989.1 528 ISFAASEKYDVVLiDTAGRRHnDTRlmsslEKFAQFAQ----PDK 568
                 **********6664777777635556544444444444....555 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0034       3.8       4      38 ..     446     480 ..     444     486 .. 0.91
   2 ?    3.4   0.0     0.032        36     114     137 ..     525     548 ..     485     565 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0034
                  EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase   4 ilvgGKGGVGKttvsaatavklsekgkkvllistD 38 
                  i + G  GVGK+t  + +a  l +++++vl+ + D
   KKY21989.1 446 ISIVGVNGVGKSTNLSKIAFFLLQNNYRVLIAACD 480
                  7788999************************9887 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.032
                  HHHHHHHHCSSSSEEEEESBSCCH CS
  ArsA_ATPase 114 eellkyvkeeeydvvvlDtaPTGh 137
                  +  + +  +e+ydvv++Dta   h
   KKY21989.1 525 KDAISFAASEKYDVVLIDTAGRRH 548
                  555677889**********96555 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0003      0.34       1     108 [.     449     572 ..     449     575 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0003
                 EE-TTSSHHHHHHHHHHHH...TEEE.EEHHHHHHHHHHTT.T........SHSSHHHHC......TSHHHHHHHHHHHHHHHHHHHH..HSSEEEEEE CS
      AAA_17   1 lGgPGsGKgtqceklveky...gfth.lsaGdllreeakrg.g........lakardemr......klpleekkelqkeaaekiaeea..kkkgvlvdg 78 
                 +G+ G+GK+t ++k++  +   ++ + + a d +r+ a ++ +        l +ar++        k++ +   +    a+++i  +a  k + vl+d+
  KKY21989.1 449 VGVNGVGKSTNLSKIAFFLlqnNYRVlIAACDTFRSGAVEQlNvhvrnlaeL-SARENAGhvslyqKGYGK---DAANVAKDAISFAAseKYDVVLIDT 543
                 79*************9444444555416889****99888852333333322.222222222233233333...333444444433332256779**** PP

                 -SEEEETTEEEESSHHHHHHHH..SEEEEE CS
      AAA_17  79 hprikeqagfldglpkevleelkpdaiill 108
                   r  ++ ++++ l+ ++ + ++pd+i+++
  KKY21989.1 544 AGRRHNDTRLMSSLE-KFAQFAQPDKILMV 572
                 999877777777776.58999999999875 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00033      0.37       2      42 ..     446     486 ..     445     551 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00033
                 EEEE--TTSSHHHHHHHHHHHH...GGGEEEEEEEEE---- CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvkvgGfyteevregg 42 
                 + i G  GvGK+T ++k++  l +++++v    +   r+g 
  KKY21989.1 446 ISIVGVNGVGKSTNLSKIAFFLLQNNYRVLIAACDTFRSGA 486
                 6789************************9888888888654 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.7   0.00087      0.98       2      83 ..     446     573 ..     445     593 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00087
                 EEEEESTTSSHHHHHHHHH.......................TS.TEEESSSTTSSSSEEEEEEEETTEE..........................EEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinalt.......................ge.kaivsdkpgtTrdinegrvklkgke..........................iel 50 
                 + ivG   vGKSt ++++                        ++ +++v + +      n g+v+                               ++l
  KKY21989.1 446 ISIVGVNGVGKSTNLSKIAffllqnnyrvliaacdtfrsgavEQlNVHVRNLAELSARENAGHVS----LyqkgygkdaanvakdaisfaasekydVVL 540
                 789**************987777654444444444433322212344555555555555555554....033444555556666666666666666*** PP

                 EECGGCSSHHHHHH...HHHHHHHHHHCTSEEEEEE CS
    MMR_HSR1  51 vDtpGliegaseek...glgkaflaleeadlillvv 83 
                 +Dt+G     +++    +  ++f++  + d il+v 
  KKY21989.1 541 IDTAG-RR--HNDTrlmSSLEKFAQFAQPDKILMVG 573
                 *****.33..33331235555555555556666665 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       4.4   4.9e+03     117     166 ..     103     151 ..      88     156 .. 0.48
   2 ?   -3.0   0.1       4.1   4.6e+03     167     220 ..     311     366 ..     297     418 .. 0.54
   3 ?   10.6   0.0    0.0003      0.34      21      50 ..     435     470 ..     426     543 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.4
      AAA_15 117 ktikdkklklkknelsdekisvekkkskkelpkekeeklekekeelkidk 166
                 k++  +kl+ ++  +   k++ + +++++el  e+ ++ +  k+ l+ +k
  KKY21989.1 103 KIY-HEKLESPNATVFRYKFDQYFDQQMQELGAEQPDSVQAAKAGLSRKK 151
                 222.2233334444444555555555566666666655555555555555 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.1
      AAA_15 167 edlkklikkleeslkkee..elknvlksaiiklllisakRnvsdedsekkssllgk 220
                 +++++++++ ++s++++   ++++++++ + +++ i   ++ s+ed ek   +++ 
  KKY21989.1 311 DEVNSILSESKNSKTSNGngVVGSSFNAISGYFRNIVGGKTLSKEDLEKPLRSMED 366
                 44444444333333333377777777777777777777777777666666555543 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.0003
      AAA_15  21 lsee......ltvliGkNnsGKSsilealdlFlnnk 50 
                 ls++      +  ++G N++GKS+ l  + +Fl ++
  KKY21989.1 435 LSSSvkprpyVISIVGVNGVGKSTNLSKIAFFLLQN 470
                 5555555566889*****************999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 4712.95
//
Query:       KKY21990.1  [L=996]
Description: putative gas2 domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-06   27.0   0.0    7.1e-06   26.0   0.0    1.4  1  GAS2      Growth-Arrest-Specific Protein 2 Domain


Domain annotation for each model (and alignments):
>> GAS2  Growth-Arrest-Specific Protein 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0     4e-10   7.1e-06      36      63 ..     776     806 ..     759     808 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 4e-10
        GAS2  36 lvlvRilr...stvmVRVGGGWetLeefLek 63 
                 +++vR++    + vmVRVGGGW  L e+L++
  KKY21990.1 776 RLFVRLVGesgERVMVRVGGGWADLGEYLRE 806
                 5688887644578****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (996 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 6717.63
//
Query:       KKY21991.1  [L=268]
Description: putative mfs transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-12   47.0   6.3    2.7e-12   46.3   6.3    1.4  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   6.3   1.5e-16   2.7e-12      11     173 ..      58     244 ..      20     265 .. 0.76

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 1.5e-16
       MFS_1  11 arsilgpalpl.alaedlgispseigllltlyalgaavaslpl.GrlsdrfGrrrvlllglllfalg.lllllfa..ss..............lw.lll 89 
                 +++ l+p++ +    +   ++p+eigl l++ +++++++++ + G l d++G +  + +gl +f+l+ +l++ ++   +              lw  l 
  KKY21991.1  58 SFNSLYPIFAQaSPPTGRALAPQEIGLSLAFAGVVTILFQIGIfGKLRDKMGNKTSYRVGLGGFVLAfILIP-WVgyKNagtgdaglgsgkalLWvELG 155
                 22333333333222222448899****99999999999998777***********************44444.43342233456667777888888899 PP

       MFS_1  90 vlrvlqGlgagalfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllp 173
                 ++ ++  ++a +++++++ li+  +p     g  +g++++ +++G ++gp ++g l s +          +f +++++++l+f+l   +  
  KKY21991.1 156 FVLLIKTIAAVGGLTSALLLITNSAPNhAVLGTLNGIAQTLSAAGRAIGPFVAGGLFSIATkikpkgEAMAFGVFGGIAFLGFLL--SFGI 244
                 99999999999999999999999999978999999*******************9998888999886556688888888888886..4433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.51
# Mc/sec: 1566.32
//
Query:       KKY21992.1  [L=472]
Description: putative fad binding domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-21   77.0   0.4    1.7e-21   76.4   0.4    1.3  1  FAD_binding_4  FAD binding domain
  ------ inclusion threshold ------
      0.067   13.3   0.0       0.15   12.2   0.0    1.6  1  BBE            Berberine and berberine like


Domain annotation for each model (and alignments):
>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.4   1.9e-25   1.7e-21       1     138 [.      41     174 ..      41     175 .. 0.91

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 1.9e-25
                    EEEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEE.STTCSCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTT CS
  FAD_binding_4   1 paavvrpeseeevaaalrlaneaglpvlvrGgGssll.gqavatggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsg 95 
                    pa+vv p++e +++a +r+a++++l+v++ GgG++     +  ++++ ldl ++++ ++++ee++ +++++Gvt g+lv+a+a++g+ + l+p + 
     KKY21992.1  41 PAIVVVPATESDIVASIRFATDHKLKVIPTGGGHGSFvPIN--SNTLYLDLNKFTS-ISLNEESKSVQFGGGVTAGQLVKACAERGYYT-LYPNAN 132
                    799*******************************9987888..8*******99***.8************************7777777.577776 PP

                    CGSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4  96 ipgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrl 138
                       ++ Gai++++  +   ++G  +d++ + ++v++ G++v +
     KKY21992.1 133 GV-GMVGAILGGGNNPFNGMHGIASDHLISIRLVTGIGNIVII 174
                    55.5667777888899**********************99865 PP

>> BBE  Berberine and berberine like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.6e-05      0.15      23      41 ..     448     466 ..     428     468 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHHH-TT--S-- CS
         BBE  23 ferLvkvKtkyDPdNvFrn 41 
                  + L+++K ++DP+ +F++
  KKY21992.1 448 VQELARIKMHWDPQSIFWS 466
                 789**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3392.98
//
Query:       KKY21993.1  [L=316]
Description: putative mixed-linked glucanase precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-07   29.3   0.2    1.6e-06   27.7   0.0    1.8  2  Glyco_hydro_16  Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   8.9e-11   1.6e-06      11      92 ..      68     153 ..      58     171 .. 0.83
   2 ?   -1.8   0.0       0.1   1.9e+03     154     168 ..     266     280 ..     250     286 .. 0.71

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 8.9e-11
                     GGGEEEETTSEEEEEEEE..EEEEEEEECCEESSEEEEEEEE..---STTEEEEEEEETGGTSTTEEEEE.EEETT-TTEEEEEEEB CS
  Glyco_hydro_16  11 ksavsvengetltltldk..esgsrikskksflyGkvearik..aaksaGvvtafylssedekahdEiDi.EflGndtgkvqtnvyg 92 
                     +++v +  ++t+tl+ +   +++ r++s  ++  G + a+    ++ + G ++a++l  +d+++ +EiDi E + n ++k q+++++
      KKY21993.1  68 GNQVYIGVDNTTTLSSTGtgRKSVRLSSGATYDSGLFIADFAhlPGGQCGSWPAYWLVGDDWPNNGEIDImEGI-NAQSKNQHTIHS 153
                     4455555555666666655588*****************9999888999*********999************9.778889999996 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.1
                     EEEEEEEBSHHHSSE CS
  Glyco_hydro_16 154 vavslwpgsdwateq 168
                     ++ + w+g++w+++ 
      KKY21993.1 266 TFCGDWAGNQWKSSS 280
                     566799999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2020.44
//
Query:       KKY21994.1  [L=547]
Description: putative arginine transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.9e-133  444.6  48.0   4.7e-133  444.3  48.0    1.0  1  AA_permease    Amino acid permease
      7e-30  104.2  53.1      9e-30  103.8  53.1    1.1  1  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
       0.19   11.8   4.1          3    7.9   0.7    2.7  2  DUF3671        Protein of unknown function
        4.9    7.0   4.8         46    3.8   0.2    2.9  2  DUF4051        Protein of unknown function (DUF4051)


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  444.3  48.0  1.1e-136  4.7e-133       1     472 [.      51     508 ..      51     513 .. 0.97

  Alignments for each domain:
  == domain 1  score: 444.3 bits;  conditional E-value: 1.1e-136
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ia+gg iGtglf+g+g +ls+aGp+gal+ay+++g+v++ vm++lge+a ++p++g+f++ya+rf++p+l+f++G++y+fsw++++alelta++
   KKY21994.1  51 HLQMIAIGGTIGTGLFIGSGTALSTAGPAGALIAYAFIGTVVYSVMVALGEMAAYIPVAGAFTAYAKRFVDPSLSFAMGWIYWFSWAITYALELTASG 148
                  99************************************************************************************************ PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeee 195
                   +iq+w   +dl+   +++ vf++v++++nl+ v  yge+ef +a ik++++++f+i+gi+++ag++ ++g+ gf++++++g+ f+ +l+ ++   + 
   KKY21994.1 149 LIIQYW--APDLN-VGIFIGVFWAVITALNLLPVAIYGEIEFYFAGIKVLTVLGFMIFGICINAGAG-KQGYiGFKYWNHPGA-FAPYLVTDN--DAL 239
                  ******..*****.999999***************************************99888888.56666**********.666666663..666 PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.aspfvifikesgvsvlapli 292
                    f +f +v++++ f+++G+elv+i+agE+++P+k+iP ai+++++ri++f+vl +++ig+l+p+++  ll+d+ +a +spfvi+ + +gvsvl++li
   KKY21994.1 240 AKFVGFWAVLIQAGFSYQGTELVGIAAGEADNPRKTIPSAIRKTFFRILFFFVLTIFFIGILIPYDNEALLSDTTTAaSSPFVIAANLAGVSVLPSLI 337
                  66*************************************************************************9999******************* PP

  AA_permease 293 naviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrf 390
                  nav++  +ls+ans +ys+sR+l  la+ g aP+++ k   +gvP+  ++++++++ll++l++s+ +a  +vf++l++i+ ++g+i+w +i+ s+l f
   KKY21994.1 338 NAVLICVVLSAANSNVYSGSRILLGLAEGGSAPRFFLKTLSNGVPYICVAFTAAFGLLGFLNESSGAA--EVFDWLVNITSVAGFICWACINGSHLCF 433
                  *********************************9999999****************************..**************************** PP

  AA_permease 391 Rkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvkn 472
                  ++al++qg+s e l++ka ++p++++++l+++++i+l+++++ +++       w++ +f+ ay++++lf++++vg+k +++ 
   KKY21994.1 434 MRALRVQGISRETLPYKAMMQPFLSWYGLFFNVLIILTQGFTTFMP-------WSTKDFFIAYISLILFVVLYVGHKAIYRP 508
                  **********************************************.......************************99986 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8  53.1     2e-33     9e-30       7     418 ..      53     495 ..      47     501 .. 0.75

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 2e-33
  AA_permease_2   7 falvigsvigsgifvkn....laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsv 98 
                     +++ig +ig+g f+ +    ++a +  ali + +i+++++  +v+ ++ E+++ +p  g    y+k++  + + f ++w++wf+++++ a+ l++
     KKY21994.1  53 QMIAIGGTIGTGLFIGSgtalSTAGPAGALIAYAFIGTVVY--SVMVALGEMAAYIPVAGAFTAYAKRFVDPSLSFAMGWIYWFSWAITYALELTA 146
                    5799***********99985444445555777777777776..6889999**999*********************************99999999 PP

  AA_permease_2  99 aasyllnalgpdlqgntwltyliaiaili.lvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl........stetdtffpn 185
                     +  +++ ++pdl  n    ++i+i++++ +++++n++ + +++ i ++ + +k+l +l ++i +g+++  g g +          +        +
     KKY21994.1 147 SGLIIQY-WAPDL--N----VGIFIGVFWaVITALNLLPVAIYGEIEFYFAGIKVLTVLGFMI-FGICINAGAGKQGYigfkywnhP--------G 226
                    9999999.78998..3....45555555526789*********************76666666.66666544444333343342221........2 PP

  AA_permease_2 186 .gwpg.v............llgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsv....aa 261
                     + p  v            +++l ++ +s++G e +   + e+ +  k++p ai   +  +l++++l+ +++ + +p d+ a ls++ ++    + 
     KKY21994.1 227 aFAPYlVtdndalakfvgfWAVLIQAGFSYQGTELVGIAAGEADNprKTIPSAIRKTFFRILFFFVLTIFFIGILIPYDNEALLSDTTTAasspFV 322
                    33332113333444444559999*******************6655489*******************999999***9999766664332333399 PP

  AA_permease_2 262 lffeavggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas..saaynfllsvss 355
                    + ++ +g +v+ ++++++++ ++l a+n+ v++ sr+l  la+ g  Prff k+  +g p+ ++ +ta + l+ +l  +  s  ++ +++l++++s
     KKY21994.1 323 IAANLAGVSVLPSLINAVLICVVLSAANSNVYSGSRILLGLAEGGSAPRFFLKTLSNGVPYICVAFTAAFGLLGFLNES--SgaAEVFDWLVNITS 416
                    9**********************************************************************66554433..2459*********** PP

  AA_permease_2 356 lgliisyllliigalilrkkrphl..kr..............pgkilvaiigalfllfllvalffppkgpatqssliyt 418
                    ++ +i+++ +  + l   +  +++   r              ++   ++ +++l+  f+ ++++   +   ++ sli+ 
     KKY21994.1 417 VAGFICWACINGSHLCFMRALRVQgiSRetlpykammqpflsWYGLFFNVLIILTQGFTTFMPWSTKDFFIAYISLILF 495
                    *******999777775555555554533567544444444444445555555555555555555333333344444444 PP

>> DUF3671  Protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1    0.0087        39      31      63 ..     271     304 ..     262     349 .. 0.61
   2 ?    7.9   0.7   0.00067         3      85     112 ..     478     505 ..     413     507 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0087
     DUF3671  31 ndkkkfkkkvlkkyglllilpvl.lpliglivpi 63 
                 n +k+++  + k ++ +l+++vl ++ ig+++p 
  KKY21994.1 271 NPRKTIPSAIRKTFFRILFFFVLtIFFIGILIPY 304
                 5567788888888887777666537888877775 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00067
     DUF3671  85 ieklytiffiilvviillvliYiliKvi 112
                 ++   + ffi +++ il+v++Y+  K i
  KKY21994.1 478 MPWSTKDFFIAYISLILFVVLYVGHKAI 505
                 5556677*****************9998 PP

>> DUF4051  Protein of unknown function (DUF4051)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2      0.01        46       2      16 ..     456     470 ..     455     478 .. 0.86
   2 ?    3.6   0.8     0.012        55       2      19 ..     486     503 ..     485     508 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.01
     DUF4051   2 fIaWywlllvvlvvv 16 
                 f++Wy+l   vl+++
  KKY21994.1 456 FLSWYGLFFNVLIIL 470
                 89******9999987 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.012
     DUF4051   2 fIaWywlllvvlvvvgyi 19 
                 fIa+  l+l v++ vg+ 
  KKY21994.1 486 FIAYISLILFVVLYVGHK 503
                 9***************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3556.89
//
Query:       KKY21995.1  [L=344]
Description: putative pantothenate transporter liz1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-19   67.7  19.3    1.3e-10   40.8   2.3    2.0  2  MFS_1       Major Facilitator Superfamily
    0.00053   18.9   0.6    0.00069   18.6   0.6    1.3  1  MFS_1_like  MFS_1 like family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   2.3   1.4e-14   1.3e-10     100     226 ..       6     149 ..       2     161 .. 0.82
   2 !   33.8  12.0   1.9e-12   1.7e-08       4     182 ..     142     323 ..     139     336 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 1.4e-14
       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.......Wravfyilaivsllafvlfllllpeepperkrkspkeee... 188
                  +++pa+++++ +w+++ee g+   ++ a+++++ ++   l + +++ l+       W ++f++ +++s+  ++ +++llp+ p + + +   e     
  KKY21995.1   6 QIFYPAAHTILGAWYKPEELGKRACIFHASSAAANMFSGYLQAGVYEGLNgvrnlpgWKWLFIMDGVISAPIAIAGFFLLPDLPENTRAFYLSETDrvl 104
                 5799******************************************88878***********************9999999999999999888888888 PP

       MFS_1 189 ..........kgtgpaplvp....awkallkdpvlwillialllfffgfsgl 226
                           + ++     +    a+k+++ + ++  +l+++l++ f+++g 
  KKY21995.1 105 aqkrmasinrAPRA-----KlnlaAFKKIFLRWHI--YLLSILYIIFINTGP 149
                 88777665333333.....2334669999999999..666666666666663 PP

  == domain 2  score: 33.8 bits;  conditional E-value: 1.9e-12
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllll.fasslwlllvlrvlqGlgag 100
                 ++f+++  +s ++p+   +l+ + g+s+  i+++ t+ ++ ++v++++++ lsd + rr+ ++ ++ ++ +l++lll+ +++++ l +++ +++ ++  
  KKY21995.1 142 IIFINTGPSSSINPMSL-WLKAE-GYSVYKINMIPTAQSAIQLVTTVIFAILSDLIRRRWpLMGFSTFFGFLSSLLLViWSIPIGLKWFAYFIARVA-V 237
                 67888888999999998.88888.9***********************************9999999999999666665776666777777777777.4 PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg..........Wravfyilaivsllafvlfllllpeepperkrk 182
                  + p++++++ ++  ++   rai ++++++slG+++ + +  l + ++            +++f++ +++++++     ++++ ++++ ++k
  KKY21995.1 238 PFGPLAMSWANEICGGDAEERAI-VIGVMNSLGYAFNAWVPLLTYPQVEgpkfrrgfafSTGAFIAQGAITAIV-----AYYWSRERKASKK 323
                 888*************9999999.99*******************88888******9999999**********9.....4554444444433 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.6   7.7e-08   0.00069       9      85 ..     144     218 ..     134     338 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 7.7e-08
  MFS_1_like   9 FfffaalgsllPYltiylkskglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfi 85 
                 F+  +  +s+ P ++++lk +g+++++i +i ++  +++++   i++ l+D +++r +++ +s+++  ++ l l+ i
  KKY21995.1 144 FINTGPSSSINP-MSLWLKAEGYSVYKINMIPTAQSAIQLVTTVIFAILSDLIRRRWPLMGFSTFFGFLSSLLLV-I 218
                 444455677777.89*************************************************99988887333.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2147.76
//
Query:       KKY22139.1  [L=290]
Description: putative 7alpha-cephem-methoxylase p8 chain related protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2043.13
//
Query:       KKY22140.1  [L=1561]
Description: putative abc drug exporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-71  237.7  48.6    4.3e-40  137.4  15.0    2.4  2  ABC2_membrane    ABC-2 type transporter
      3e-38  131.4   0.0    3.9e-20   72.7   0.0    2.6  2  ABC_tran         ABC transporter
    1.4e-31  108.3   2.0    3.6e-25   87.7   0.0    2.9  2  PDR_CDR          CDR ABC transporter
    2.6e-17   63.2   0.3    7.7e-17   61.7   0.3    1.9  1  ABC_trans_N      ABC-transporter N-terminal
    7.9e-07   29.7   0.0      0.002   18.7   0.0    2.5  2  AAA_18           AAA domain
    3.2e-06   27.2   0.0      0.007   16.2   0.0    3.0  3  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    7.1e-06   26.5   0.1     0.0049   17.3   0.1    2.5  2  AAA_16           AAA ATPase domain
      2e-05   24.6   0.3    0.00087   19.2   0.1    2.4  2  RsgA_GTPase      RsgA GTPase
      4e-05   23.8   0.0      0.031   14.4   0.0    2.6  2  AAA_33           AAA domain
    0.00015   21.3   0.1      0.064   12.7   0.0    2.9  3  SMC_N            RecF/RecN/SMC N terminal domain
    0.00019   21.1   0.5       0.89    9.4   0.2    2.6  2  AAA_29           P-loop containing region of AAA domain
     0.0002   21.4   0.7       0.13   12.4   0.2    2.6  2  MMR_HSR1         50S ribosome-binding GTPase
    0.00088   19.6   0.5     0.0072   16.6   0.2    2.3  2  AAA_28           AAA domain
     0.0022   18.3   0.2       0.27   11.5   0.1    2.6  2  AAA_22           AAA domain
     0.0027   17.3   0.1      0.062   12.9   0.0    2.2  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
     0.0081   16.1   0.9       0.92    9.4   0.4    2.4  2  NACHT            NACHT domain
     0.0092   16.4   0.4        5.4    7.4   0.2    2.7  2  AAA_17           AAA domain
  ------ inclusion threshold ------
      0.016   15.0   0.0       0.24   11.1   0.0    2.6  3  AAA_24           AAA domain
      0.021   14.4   0.3       0.12   11.9   0.1    2.1  2  AAA_25           AAA domain
      0.024   14.7   0.0        0.4   10.7   0.0    2.5  2  Dynamin_N        Dynamin family
      0.043   12.9   0.1        3.5    6.6   0.1    2.2  2  T2SSE            Type II/IV secretion system protein
      0.043   13.2   0.9        9.2    5.5   0.0    2.4  2  FtsK_SpoIIIE     FtsK/SpoIIIE family
      0.053   13.2   0.2       0.89    9.2   0.0    2.2  2  BAR_3            BAR domain of APPL family
       0.11   12.9   0.7         11    6.4   0.0    2.6  2  AAA              ATPase family associated with various cellul
       0.12   12.0   1.2        5.6    6.6   0.3    2.3  2  AAA_30           AAA domain
       0.14   11.3   0.5        8.1    5.5   0.3    2.4  2  NB-ARC           NB-ARC domain
       0.18   11.8   1.3        2.1    8.3   0.3    2.4  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
       0.23   10.5  20.6        1.1    8.3   5.0    2.8  2  ABC2_membrane_3  ABC-2 family transporter protein
       0.26   10.5   0.4          1    8.6   0.2    1.9  2  Septin           Septin


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.4  15.0   6.9e-43   4.3e-40       2     210 .]     537     749 ..     536     749 .. 0.98
   2 !  106.1  25.6   2.6e-33   1.6e-30       1     208 [.    1207    1417 ..    1207    1419 .. 0.93

  Alignments for each domain:
  == domain 1  score: 137.4 bits;  conditional E-value: 6.9e-43
  ABC2_membrane   2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.nsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsay 96 
                    q+  +++ref ++w++++    ++ + ++  a+++g++f+++  +++++++r g l fs lfl+ + l+++ +  +++r ++er++++ +y++sa+
     KKY22140.1 537 QVASCTQREFWLYWGSKTEM-KTKAFIIICSAFIVGSLFYGQSlDTSGAFSRGGSLLFSSLFLGWLQLSEL-MKAVTGRDIIERHRSYAFYRPSAV 630
                    8999*************999.9******************9999999999**************9999999.************************ PP

  ABC2_membrane  97 vlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsm....p 186
                    vl++v+++lpv l+++++f +ivyf+ +ld++  +ff+++ll++  ++ +++l ++++a++p+++da+ +++l +  l+l++G++ip++++    p
     KKY22140.1 631 VLSRVVLDLPVLLVEVVVFAIIVYFMADLDVEagKFFIYMLLVYTNVISVTALYRMFAAVSPTLDDAIRFSGLAFHALILFAGYVIPRPTLinsyP 726
                    *********************************9**********************************************************9766 PP

  ABC2_membrane 187 kwlqwiaylnPltyavealrsnlf 210
                     w+ w++y+n ++++ ea+++n+f
     KKY22140.1 727 -WFGWLYYVNGVAWTWEAFMVNEF 749
                    .*********************97 PP

  == domain 2  score: 106.1 bits;  conditional E-value: 2.6e-33
  ABC2_membrane    1 tqikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedglnrpgllffsvlflafsaltsvapvferergvl.erelvsplysl 93  
                     tqi  l+kr f+ +wr+ps+  + +l+  + ++l++g+ f+++gns  +l++  +   +++ +  + + s++p f  +r ++ +rel+s++y +
     KKY22140.1 1207 TQIIELTKRMFIAQWRQPSYV-YGKLFVSVTTGLFVGFTFYSVGNSIAALQYRLFAPYLIILIPPLVINSIVPKFYLDRALWeARELPSRIYGW 1299
                     6999**************999.***********************99999998888888888888***************************** PP

  ABC2_membrane   94 sayvlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsm 185 
                      a+++a +++e+p +++ ++i+++i+++ v   +s  + ++ l+++++ +++  s+g ++ a+aps+ ++s++ +l++l + ++ G++ p++++
     KKY22140.1 1300 VAFCTAELVAEVPSAIIGGIIYWAIYFWAVYPGPSsmSAGYTLVMTIAWFFFQASFGQWLTAFAPSYTVISNVLPLFFLQIAMFNGIMRPYPQL 1393
                     ****************************86444434667******************************************************* PP

  ABC2_membrane  186 .pkwlqwiaylnPltyavealrsn 208 
                      p w ++i+y+nP ty +++++++
     KKY22140.1 1394 pPPWKWFIYYVNPATYWLQGMLAA 1417
                     6556666*************9875 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.0   6.4e-23   3.9e-20       3     136 ..     218     369 ..     216     370 .. 0.91
   2 !   56.1   0.0   8.6e-18   5.3e-15       1     137 []     912    1059 ..     912    1059 .. 0.91

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 6.4e-23
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--...SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHHTC..... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxx..... RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkp...teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.........esdee..... 84 
                 + +  ++ ge++ ++G+ G+G+St+lk++a++        Ge+++ g + +e ++++++ e+ + p+++q+fp ltv ++         +++++     
  KKY22140.1 218 DFTGAVRDGEMMLVLGRPGSGCSTFLKAIANERGSfaaVTGEVTYGGISAEE-QKKHYKGEVNYNPEDDQHFPALTVWQTlrfalenktKKKDRasvpi 315
                 66778999**********************987666669******9999999.99******************************9876333337999* PP

                 .HHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 .iekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpt 136
                  i+ +l+ +g++++k+t v+++  + +SgG+++rv++a++l++k++++++D+ t
  KKY22140.1 316 iIDGLLKMFGITHTKHTLVGNEYvRGVSGGERKRVSIAETLATKSTVVCWDNST 369
                 *******************99989***************************987 PP

  == domain 2  score: 56.1 bits;  conditional E-value: 8.6e-18
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................ 79  
                  l+ v+  +k+g ++a++G +GaGK+tLl++l++  k     G++l+dg+++       +++  g+++q + +  + t+re                 
  KKY22140.1  912 LNGVNGYVKPGVLIALMGASGAGKTTLLNTLSQRQKMgvVTGSMLVDGRPVPL----DFQRGTGYCEQMDLHEGTATIREAlefsavlrqdrriprq 1004
                  689999****************************9998899**********99....9***********9999999***********9777766554 PP

                  HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEE.EESTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
    ABC_tran   80 esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpklll.lDEpta 137 
                  e+ + ++++++ l+l++++d ++    ssL   +++r+ +   l+ kp+lll lDEpt+
  KKY22140.1 1005 EKLKYVDQIIELLELSDIQDAII----SSLGVEHRKRLTIGVELAAKPSLLLfLDEPTS 1059
                  44444******************....*********************987549***96 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   5.9e-28   3.6e-25       1      90 [.     762     848 ..     762     850 .. 0.97
   2 !   18.4   1.0   2.4e-06    0.0015      27      68 ..    1471    1511 ..    1462    1520 .. 0.83

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 5.9e-28
     PDR_CDR   1 vPsgpgyenvseenrvCavvGavpGqeyVsGddYlelsfgyssshlwrnfgiliaflifflalyllatelisaekskgevlvfkrgkapk 90 
                 vP+gpg+e   ++++ C+++G++pG+++VsGd+Y+++sf++ +shlwr++gi++a ++ +++++++a+el+s++ s g ++v+kr+k+ +
  KKY22140.1 762 VPQGPGVE---PQYQGCTLTGSTPGSTNVSGDAYVKSSFDFDRSHLWRDWGIVVAITVGYVLITAIAAELLSFAGSAGGAMVYKRSKQAT 848
                 8*****99...9**************************************************************************9876 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 2.4e-06
     PDR_CDR   27 eyVsGddYlelsfgyssshlwrnfgiliaflifflalyllat 68  
                  +y +Gd+Yl+ + + ++s +wr+fgi +af++   al  l++
  KKY22140.1 1471 QYATGDEYLA-TVNVQHSYMWRDFGIFVAFCVSNWALVYLFI 1511
                  5779******.89******************98776655544 PP

>> ABC_trans_N  ABC-transporter N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.3   1.2e-19   7.7e-17       1      80 [.      75     183 ..      75     184 .. 0.76

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 1.2e-19
  ABC_trans_N   1 eLartlsrqssssssssss.....................e.........sssedeeeed......seFdlekwlknlreridr.dgikprklGVvFk 61 
                  e++r+ls++s ++++s+ss                     +         +        +      seFdl ++lkn++ +++  +g++ +k+GVv+k
   KKY22140.1  75 EMRRELSKLSIERTRSRSSigrthshvtspstarsqpaqiTlshdashfsD--------EetpaeeSEFDLDNFLKNGHYEKRTgAGEPSKKVGVVYK 164
                  578888888777766666677888888888888877766515343322222........233457677***************8799*********** PP

  ABC_trans_N  62 nLtVeGvgsgadyqpTvgn 80 
                  nLtV+Gvgs++ +++T++ 
   KKY22140.1 165 NLTVKGVGSSSVLVKTLPQ 183
                  *****************96 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0046       2.9       2      84 ..     230     322 ..     229     331 .. 0.69
   2 !   18.7   0.0   3.2e-06     0.002       1      87 [.     925    1018 ..     925    1052 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0046
      AAA_18   2 lltGtpGvGKttlakeLskrlgf.............gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghla 84 
                 l+ G pG+G +t+ k+++++ g+             + + ++ +++++  +  +++++ + + + +  + +l ++ ++ +   +   +++idg+l 
  KKY22140.1 230 LVLGRPGSGCSTFLKAIANERGSfaavtgevtyggiSAEEQKKHYKGEVNYNPEDDQHFPALTVWQTLRFALENKTKKKD---RASVPIIIDGLLK 322
                 689**************999855488888888876633333333333333333333447777777777777777777765...5899999999875 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 3.2e-06
      AAA_18    1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrldedkldklldaleenss........aleegknlvidghlaele 87  
                  I+l+G++G+GKttl + Ls+r ++gv+ ++++ +++++  +++  +  ++++d +   + +++  e s+          +++k  ++d++++ le
  KKY22140.1  925 IALMGASGAGKTTLLNTLSQRQKMGVVTGSMLVDGRPVPLDFQRGTGYCEQMDLHEGTATIREALEFSAvlrqdrriP-RQEKLKYVDQIIELLE 1018
                  89*******************999999999999999999998885555555555555555555555444444444321.1111113444444333 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.8   1.1e+03       2      63 ..     229     283 ..     228     287 .. 0.85
   2 !    7.2   0.0    0.0064         4       2      35 ..     925     952 ..     924    1018 .. 0.82
   3 !   16.2   0.0   1.1e-05     0.007     256     296 ..    1048    1086 ..    1025    1093 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.8
      AAA_21   2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeie 63 
                 +++ G+ gsG S++L+a+       ++ +g+    +g +++++i+ +   ++ ++++++  e
  KKY22140.1 229 MLVLGRPGSGCSTFLKAI-------ANERGSFAAVTGEVTYGGISAEEQKKHYKGEVNYNPE 283
                 56788889**********.......6889999999999999999999999999998888665 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0064
      AAA_21   2 nvliGpNgsGKSnLLdaldllarldrdvegltde 35 
                  +l G+ g+GK++LL +l+      + ++++  +
  KKY22140.1 925 IALMGASGAGKTTLLNTLS------QRQKMGVVT 952
                 6799**************4......444444444 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 1.1e-05
      AAA_21  256 kkgsllliDEpEngLHPkllrrllellkelsrngaQviltT 296 
                  ++  ll++DEp +gL+ +   +++++lk+ls+  +Q i+ T
  KKY22140.1 1048 PS-LLLFLDEPTSGLDSQSAYSIVRFLKKLSQ-AGQAIICT 1086
                  33.79***************************.88886655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.015       9.5      13      46 ..     217     248 ..     208     314 .. 0.80
   2 !   17.3   0.1     8e-06    0.0049      25     143 ..     923    1056 ..     909    1087 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.015
      AAA_16  13 lsalervrsgrpelvllsGesGvGKsslvrellr 46 
                 ++  ++vr+g  e++l+ G +G+G s+ ++++++
  KKY22140.1 217 HDFTGAVRDG--EMMLVLGRPGSGCSTFLKAIAN 248
                 5566677777..89***************99996 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 8e-06
      AAA_16   25 elvllsGesGvGKsslvrellralekdggif......lrgkcdql..esaipy..........salaqalareellrqlldeaesaeleawreklee 103 
                   l+ l G+sG GK++l+++l +   ++++ +      + g+ + l  ++++ y          +++ +al+++ +lrq  + +++ e   + +++ e
  KKY22140.1  923 VLIALMGASGAGKTTLLNTLSQ---RQKMGVvtgsmlVDGRPVPLdfQRGTGYceqmdlhegtATIREALEFSAVLRQDRRIPRQ-EKLKYVDQIIE 1015
                  5789*****************6...332333024444666665555555555566666666644477777665555554444444.33333344555 PP

      AAA_16  104 ala.......avpelagaeasrllellkrllallsrderp.lvlvlDd 143 
                   l+       ++++l  ++++rl           +  ++p l+l+lD+
  KKY22140.1 1016 LLElsdiqdaIISSLGVEHRKRLTIG-------VELAAKPsLLLFLDE 1056
                  55534433332222333322222222.......222233447777775 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.16     1e+02      90     123 ..     216     250 ..     198     272 .. 0.74
   2 !   19.2   0.1   1.4e-06   0.00087      87     127 ..     909     950 ..     881     959 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.16
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallpel 123
                  +++ + +++d ++++++G  G G St+++a+++e 
   KKY22140.1 216 IHDFTGAVRDgEMMLVLGRPGSGCSTFLKAIANER 250
                  45555566666999*****************9873 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.4e-06
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLinallpelelkt 127
                  ++ l+ ++ ++k   +++l+G SG+GK+tL+n+l +++++ +
   KKY22140.1 909 RKLLNGVNGYVKPgVLIALMGASGAGKTTLLNTLSQRQKMGV 950
                  556666667777656789****************99877654 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.013         8       2      76 ..     229     318 ..     228     324 .. 0.64
   2 !   14.4   0.0     5e-05     0.031       1      69 [.     924     989 ..     924    1021 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.013
      AAA_33   2 vllvGlpGsGKstlaerllkklg.avllssdtlrrrlfgtdqqskt..............dytrvldrlyqilnelarkalsagrnvild 76 
                 +l+ G pGsG st+++ +++++g +  ++  + +  + +++q++                   +v++ l+  l++  +k+ +a  ++i+d
  KKY22140.1 229 MLVLGRPGSGCSTFLKAIANERGsFAAVTGEVTYGGISAEEQKKHYkgevnynpeddqhfPALTVWQTLRFALENKTKKKDRASVPIIID 318
                 6889*******************9888888886666666444433234444444433333223344555556666666666666666665 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 5e-05
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdtlrr.rlfgtdqqsktdytrvldrlyqilnelarkalsa 69 
                 l+ l G++G+GK+tl+  l +++++ +++   l + r ++ d q+ t y +  d l+   +++a+++ + 
  KKY22140.1 924 LIALMGASGAGKTTLLNTLSQRQKMGVVTGSMLVDgRPVPLDFQRGTGYCEQMD-LH---EGTATIREAL 989
                 68899*******************999998888886777788888887766543.22...2334444444 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.025        16      25     155 ..     227     360 ..     212     409 .. 0.75
   2 ?   -1.6   0.0       2.4   1.5e+03      27      44 ..     925     942 ..     919     945 .. 0.86
   3 !   12.7   0.0    0.0001     0.064     156     200 ..    1046    1090 ..    1033    1103 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.025
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkev 123
                 ++  ++G+ GSG s +l Ai    G  s  ++  e +   i++ +e+++  k+ev+   +++++      + +++ +++    e++ k +++      +
  KKY22140.1 227 EMMLVLGRPGSGCSTFLKAIANERG--SFAAVTGEVTYGGISA-EEQKKHYKGEVNYNPEDDQHF-----PALTVWQTLRFALENKTKKKDRASVPIII 317
                 577899**************88888..6667999999999998.999999999999854333333.....44444444444444444555555555677 PP

                 HHHHHCTT-STT...........CS-HHHHHHHHHHHHHHHHC CS
                 xxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 124 sellesagiske...........lLSgGektLvalaLlfAiqk 155
                   ll++ gi+ +             SgGe++ v++a  +A+++
  KKY22140.1 318 DGLLKMFGITHTkhtlvgneyvrGVSGGERKRVSIAETLATKS 360
                 7888888888877888888888889999999999988888654 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.4
                 EEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAi 44 
                  a++G+ G+GK+ ll+ +
  KKY22140.1 925 IALMGASGAGKTTLLNTL 942
                 5799*********99876 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 0.0001
                  CS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  156 vkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislree 200 
                  +kp+ l +lDe  + LD +    ++++lk+ s+  Q i+ ++++ 
  KKY22140.1 1046 AKPSLLLFLDEPTSGLDSQSAYSIVRFLKKLSQAGQAIICTIHQP 1090
                  68999************************************9876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0015      0.94      22      43 ..     225     247 ..     214     248 .. 0.82
   2 !    9.4   0.2    0.0014      0.89      24      40 ..     924     940 ..     913     944 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0015
      AAA_29  22 kg.atlltGpsGsGKSTllDAiq 43 
                 +g ++l+ G+ GsG ST+l Ai+
  KKY22140.1 225 DGeMMLVLGRPGSGCSTFLKAIA 247
                 4569***************9986 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0014
      AAA_29  24 atlltGpsGsGKSTllD 40 
                  + l+G+sG+GK+Tll 
  KKY22140.1 924 LIALMGASGAGKTTLLN 940
                 56899**********96 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.012       7.2       3      31 ..     230     255 ..     228     276 .. 0.76
   2 !   12.4   0.2   0.00021      0.13       2      22 ..     925     945 ..     924     955 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.012
                 EEEESTTSSHHHHHHHHHTSTEEESSSTT CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgekaivsdkpg 31 
                 +++Grp +G St+++a+ +e+   +    
  KKY22140.1 230 LVLGRPGSGCSTFLKAIANERGSFA---A 255
                 799***************9864333...3 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00021
                 EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge 22 
                 +a++G + +GK+tL+n+l+++
  KKY22140.1 925 IALMGASGAGKTTLLNTLSQR 945
                 89****************987 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.6   9.7e+02       4      30 ..     231     260 ..     229     301 .. 0.76
   2 !   16.6   0.2   1.2e-05    0.0072       2      27 ..     925     951 ..     924     956 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.6
      AAA_28   4 itGgestGKTtlleaLaar..gypvv.pEa 30 
                 ++G +++G +t l+a+a++   +  v  E+
  KKY22140.1 231 VLGRPGSGCSTFLKAIANErgSFAAVtGEV 260
                 7899*************7544344444665 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.2e-05
      AAA_28   2 ivitGgestGKTtlleaLaar.gypvv 27 
                 i+++G++++GKTtll+ L++r ++ vv
  KKY22140.1 925 IALMGASGAGKTTLLNTLSQRqKMGVV 951
                 89*****************98645444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.11        66       4      30 ..     225     251 ..     223     334 .. 0.76
   2 !   11.5   0.1   0.00043      0.27       7      29 ..     924     946 ..     920     970 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.11
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqld 30 
                 +  +++v G +G+G +t l+ ++++  
  KKY22140.1 225 DGEMMLVLGRPGSGCSTFLKAIANERG 251
                 56799****************999874 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00043
      AAA_22   7 ilvvtGesGtGKTtllrrlleql 29 
                 +++++G sG+GKTtll++l ++ 
  KKY22140.1 924 LIALMGASGAGKTTLLNTLSQRQ 946
                 689***************99876 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.23   1.4e+02       3      37 ..     229     261 ..     227     276 .. 0.78
   2 !   12.9   0.0    0.0001     0.062       3      36 ..     925     955 ..     923    1000 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.23
                 EEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-S CS
        cobW   3 tvltGflGsGKTtLlnhllenraglklavivNefg 37 
                 +++ G +GsG +t+l+++ ++    + a +++e+ 
  KKY22140.1 229 MLVLGRPGSGCSTFLKAIANE--RGSFAAVTGEVT 261
                 67889************9966..456777788776 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.0001
                 EEEEESTTCCHHHHHHHHHCT--SS-EEEEESS- CS
        cobW   3 tvltGflGsGKTtLlnhllenraglklavivNef 36 
                 + l G  G+GKTtLln+l ++   +k+ v+++ +
  KKY22140.1 925 IALMGASGAGKTTLLNTLSQR---QKMGVVTGSM 955
                 578999***********9976...7788887766 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.044        27       2      22 ..     228     248 ..     227     252 .. 0.90
   2 !    9.4   0.4    0.0015      0.92       2      27 ..     924     949 ..     923     957 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.044
                 CEEEEC-TTTCHHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqklal 22 
                 ++++ G++GsG +t+l+ +a 
  KKY22140.1 228 MMLVLGRPGSGCSTFLKAIAN 248
                 689****************97 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0015
                 CEEEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaeg 27 
                 l++l G++G GKTtLl  l +  + g
  KKY22140.1 924 LIALMGASGAGKTTLLNTLSQRQKMG 949
                 58899*************99876655 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.021        13       1      55 [.     232     287 ..     232     327 .. 0.65
   2 !    7.4   0.2    0.0087       5.4       2      29 ..     929     955 ..     928     960 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.021
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTTS.HSSHHHHCTSHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrggl.akardemrklpleekk 55 
                 lG PGsG +t ++ ++ + g     +G++ +  ++ ++  +  ++e++ +p+++++
  KKY22140.1 232 LGRPGSGCSTFLKAIANERGSFAAVTGEVTYGGISAEEQkKHYKGEVNYNPEDDQH 287
                 699***************99888888999998887777624445666666555554 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0087
                 E-TTSSHHHHHHHHHHHHTEEEEEHHHH CS
      AAA_17   2 GgPGsGKgtqceklvekygfthlsaGdl 29 
                 G  G+GK+t++++l ++ +  +++ G++
  KKY22140.1 929 GASGAGKTTLLNTLSQRQKMGVVT-GSM 955
                 99************9887777776.444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.6   9.7e+02       4      22 ..     228     246 ..     226     262 .. 0.87
   2 ?   11.1   0.0   0.00039      0.24       5      36 ..     925     971 ..     922    1016 .. 0.79
   3 ?   -1.3   0.0       2.5   1.6e+03     111     131 ..    1069    1089 ..    1064    1092 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.6
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                 ++l+ G +g+G +t++k +
  KKY22140.1 228 MMLVLGRPGSGCSTFLKAI 246
                 689************9987 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00039
      AAA_24   5 iliyGpsgiGKTtlakel...............gpkplfidtekGlk 36 
                 i+++G sg+GKTtl+++l                 +p+ +d+ +G+ 
  KKY22140.1 925 IALMGASGAGKTTLLNTLsqrqkmgvvtgsmlvDGRPVPLDFQRGTG 971
                 89****************87777777766666666666667777665 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 2.5
      AAA_24  111 frrllkklqelrknvifiahe 131 
                  ++r+lkkl+++++ +i++ h+
  KKY22140.1 1069 IVRFLKKLSQAGQAIICTIHQ 1089
                  689***************997 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.6   9.8e+02      28      51 ..     221     244 ..     203     258 .. 0.80
   2 ?   11.9   0.1   0.00019      0.12      26      53 ..     915     942 ..     909     958 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.6
      AAA_25  28 gllpagelallaGapgtGKttlal 51 
                 g ++ ge  l+ G+pg+G +t++ 
  KKY22140.1 221 GAVRDGEMMLVLGRPGSGCSTFLK 244
                 467889**************9985 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00019
      AAA_25  26 vkgllpagelallaGapgtGKttlaldl 53 
                 v g++  g l++l+Ga+g+GKttl+  l
  KKY22140.1 915 VNGYVKPGVLIALMGASGAGKTTLLNTL 942
                 6789999*****************8655 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.67   4.1e+02       2      37 ..     230     262 ..     229     334 .. 0.57
   2 ?   10.7   0.0   0.00065       0.4       1      46 [.     925     972 ..     925    1040 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.67
                 EEEEBTTTTHHHHHHHHHTS--S---SSS---S-EE CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilprgpnptTrrple 37 
                 +v+G   sG S++l a+  e+    +   +T  ++ 
  KKY22140.1 230 LVLGRPGSGCSTFLKAIANER---GSFAAVTGEVTY 262
                 5899999**********9998...444455554443 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00065
                 EEEEEBTTTTHHHHHHHHHTS--S-..--SSS---S-EEEEECCT--- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilp..rgpnptTrrplelqlgeeeea 46 
                 ia++G+  +GK+++ln L +++ +   +g+ ++  rp+ l  ++    
  KKY22140.1 925 IALMGASGAGKTTLLNTLSQRQKMGvvTGSMLVDGRPVPLDFQRGTGY 972
                 899******************977644777788888888888665553 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.046        28     118     151 ..     216     248 ..     199     253 .. 0.77
   2 ?    6.6   0.1    0.0056       3.5     126     151 ..     919     944 ..     885     954 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.046
       T2SSE 118 iaevlrkavrerglilvsGgTgsGKttllyallk 151
                 i++    avr   ++lv G  gsG +t+l a+ +
  KKY22140.1 216 IHD-FTGAVRDGEMMLVLGRPGSGCSTFLKAIAN 248
                 333.35688999*****************99876 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0056
       T2SSE 126 vrerglilvsGgTgsGKttllyallk 151
                 v+   li + G+ g GKttll++l +
  KKY22140.1 919 VKPGVLIALMGASGAGKTTLLNTLSQ 944
                 5556788899*************987 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.015       9.2      41      59 ..     228     246 ..     203     247 .. 0.79
   2 ?    5.5   0.3     0.016       9.6      43      59 ..     926     942 ..     919     944 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.015
                   SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE  41 hllvaGatgsGKStalntL 59 
                    +lv+G++gsG St+l+++
    KKY22140.1 228 MMLVLGRPGSGCSTFLKAI 246
                   58**************985 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.016
                   EEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE  43 lvaGatgsGKStalntL 59 
                    ++Ga+g GK+t lntL
    KKY22140.1 926 ALMGASGAGKTTLLNTL 942
                   568*************8 PP

>> BAR_3  BAR domain of APPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0014      0.89       2      47 ..     476     521 ..     476     558 .. 0.86
   2 ?    1.5   0.0      0.34   2.1e+02     148     178 ..     987    1017 ..     970    1023 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0014
       BAR_3   2 efeeclkDSPkfResleevEaeleelekklkkllKlckrlieagka 47 
                 e+ee+++ SP++R+ l +vE   ++l++   + +K+ k  ++a k+
  KKY22140.1 476 ELEEAFRKSPHYRALLTDVEGYESRLQQSGHEATKEFKGSVQASKS 521
                 79***************************************99884 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.34
       BAR_3  148 eleeadnelkatrkkfhqasldyvlqinelq 178 
                  e+ e +++l ++r+  +q+ l+yv qi el 
  KKY22140.1  987 EALEFSAVLRQDRRIPRQEKLKYVDQIIELL 1017
                  677999*********************9885 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.018        11       1      24 [.     229     252 ..     229     281 .. 0.75
   2 ?    4.1   0.1     0.097        60       2      26 ..     926     950 ..     925     964 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.018
                 EEEESSTTSSHHHHHHHHHHHHTH CS
         AAA   1 vllyGppGtGKTllakavakelgv 24 
                 +l+ G pG G +++ ka+a+e g+
  KKY22140.1 229 MLVLGRPGSGCSTFLKAIANERGS 252
                 799******************542 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.097
                 EEESSTTSSHHHHHHHHHHHHTHEE CS
         AAA   2 llyGppGtGKTllakavakelgvef 26 
                  l+G  G GKT+l + + +  ++ +
  KKY22140.1 926 ALMGASGAGKTTLLNTLSQRQKMGV 950
                 689************9999876544 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.074        46      15      40 ..     224     248 ..     216     260 .. 0.85
   2 ?    6.6   0.3    0.0091       5.6      19      40 ..     923     944 ..     917     951 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.074
      AAA_30  15 tsgdrvavltGpAGtGKttalkalre 40 
                  +g+ ++++ G++G+G +t lka+++
  KKY22140.1 224 RDGE-MMLVLGRPGSGCSTFLKAIAN 248
                 4554.999***************975 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0091
      AAA_30  19 rvavltGpAGtGKttalkalre 40 
                  + +l G+ G+GKtt+l++l +
  KKY22140.1 923 VLIALMGASGAGKTTLLNTLSQ 944
                 567899***********99865 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.065        40      21      43 ..     227     249 ..     207     303 .. 0.84
   2 ?    5.5   0.3     0.013       8.1      21      43 ..     923     945 ..     912     951 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.065
                 EEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  21 lvvalvGmgGvGKttlakqilnk 43 
                  ++ + G++G+G +t +k i n+
  KKY22140.1 227 EMMLVLGRPGSGCSTFLKAIANE 249
                 4899****************998 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.013
                 EEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  21 lvvalvGmgGvGKttlakqilnk 43 
                 +++al+G  G GKttl++   + 
  KKY22140.1 923 VLIALMGASGAGKTTLLNTLSQR 945
                 679*************9877655 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.43   2.7e+02       4      45 ..     209     252 ..     206     261 .. 0.78
   2 ?    8.3   0.3    0.0034       2.1      19      44 ..     922     947 ..     907     954 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.43
                 HHHHHHHHHHHHHCH..TEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE   4 eeetealgkklakal..gdvilLeGdLGaGKTtlvrglakalgv 45 
                 ++ +++l ++++ a+  g+++l  G  G+G +t+ +++a++ g 
  KKY22140.1 209 QQVMKDLIHDFTGAVrdGEMMLVLGRPGSGCSTFLKAIANERGS 252
                 555666777776666778889999**************998764 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0034
                 TEEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalg 44 
                 g +i+L G  GaGKTtl   l +  +
  KKY22140.1 922 GVLIALMGASGAGKTTLLNTLSQRQK 947
                 4569**************99988755 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.0    0.0018       1.1     200     342 ..     625     821 ..     612     824 .. 0.65
   2 ?    7.1   7.6    0.0042       2.6     218     317 ..    1319    1418 ..    1295    1508 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0018
  ABC2_membrane_3 200 vsplqywlskilgdflvyllqlllilll...afglgipfgnlglllllfllfglayialgyllsslfknsetaqilifivilllsgffgglfp. 289
                       +p++ +ls+++ d+ v l+ ++++ ++   + +l ++ g +++ +ll+    ++++al+ ++ +++ + ++a+ + ++ +  l++f g+++p 
       KKY22140.1 625 YRPSAVVLSRVVLDLPVLLVEVVVFAIIvyfMADLDVEAGKFFIYMLLVYTNVISVTALYRMFAAVSPTLDDAIRFSGLAFHALILFAGYVIPr 718
                      689999*********9999988887776223555467777999999999999***********************9888888788888888886 PP

  ABC2_membrane_3 290 ..ledlpsalkwifsiiPffapglgllrl.itgdplwe..................................................illsli 330
                        l +   ++ w+ +++   +  ++++    +g    +                                                  ++++++
       KKY22140.1 719 ptLINSYPWFGWLYYVNGVAWTWEAFMVNeFSGR---TmkcsesmlvpqgpgvepqyqgctltgstpgstnvsgdayvkssfdfdrshLWRDWG 809
                      5533344555555555544444444422212222...123344444555555555555555555555555555555555555555555555555 PP

  ABC2_membrane_3 331 ilalfavvylll 342
                      i ++++v y+l+
       KKY22140.1 810 IVVAITVGYVLI 821
                      555555555555 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0042
  ABC2_membrane_3  218 llqlllilllafglgipfg...nlglllllfllfglayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsii.P 305 
                       ++ ++++++ ++          + g++l++ +  ++  +++g +l+++  +++  + ++++++l + +f g++ p ++lp ++kw+ +++ P
       KKY22140.1 1319 IIYWAIYFWAVYP----GPssmSAGYTLVMTIAWFFFQASFGQWLTAFAPSYTVISNVLPLFFLQIAMFNGIMRPYPQLPPPWKWFIYYVnP 1406
                       2223333333333....333247799**************************9988877777774444445556899*******96665449 PP

  ABC2_membrane_3  306 ffapglgllrli 317 
                        ++  +g+l   
       KKY22140.1 1407 ATYWLQGMLAAT 1418
                       999999998774 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.9   1.2e+03       7      27 ..     229     249 ..     227     286 .. 0.82
   2 ?    8.6   0.2    0.0017         1       8      29 ..     926     947 ..     922     958 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.9
                 EEEEEBTTSSCCCCCCTTSSS CS
      Septin   7 lmvvGesglGkttlintlfet 27 
                 ++v G+ g G +t+++++ ++
  KKY22140.1 229 MLVLGRPGSGCSTFLKAIANE 249
                 6899************99876 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0017
                 EEEEBTTSSCCCCCCTTSSSS- CS
      Septin   8 mvvGesglGkttlintlfetdl 29 
                  ++G+sg Gkttl+ntl +++ 
  KKY22140.1 926 ALMGASGAGKTTLLNTLSQRQK 947
                 578**************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       821  (0.0457917); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.92u 0.26s 00:00:01.18 Elapsed: 00:00:00.40
# Mc/sec: 11585.98
//
Query:       KKY22141.1  [L=532]
Description: putative deacetylase complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-33  115.6   4.7    9.7e-33  114.0   4.7    1.9  1  Sds3      Sds3-like
  ------ inclusion threshold ------
       0.11   12.7   2.0       0.53   10.5   2.0    2.2  1  DUF2508   Protein of unknown function (DUF2508)
       0.11   12.1   0.0          2    8.0   0.0    2.2  2  ANAPC10   Anaphase-promoting complex, subunit 10 (APC10)
          1    9.9   5.1       0.66   10.4   0.1    3.3  4  CcdA      Post-segregation antitoxin CcdA


Domain annotation for each model (and alignments):
>> Sds3  Sds3-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0   4.7   2.2e-36   9.7e-33       3     200 ..      31     263 ..      29     480 .. 0.88

  Alignments for each domain:
  == domain 1  score: 114.0 bits;  conditional E-value: 2.2e-36
        Sds3   3 eklskiessFaelRDklYrerLteLqteltllqqGt......................................hpellrklrdleeerDaeLkrlrlr 63 
                 +k +++ + Fa++RD ++r++L  Lqt++ l+ q++                                      ++++++++++ +e rD eL++l  r
  KKY22141.1  31 DKYQDLINDFAQNRDLHFRKQLLGLQTDMMLITQADpyqpepmddspegiarqveeaaagtpyqqdmsphagkwYSKFVQEVNQAKEVRDIELSQLVVR 129
                 67788999******************************************************************************************* PP

        Sds3  64 eeyqlkriekefkadiekakqeheklvkllkeklyeelekkikrLkeeklllDlananslkktrshtaglanesatste....pvelltdrrslrtnsd 158
                 ++++l ri++e+++++  a +e+++l ++l+e+l ++l++++ rL +ek++lD+a++n++         l+++s++s++    p++  ++r++++ +++
  KKY22141.1 130 HQDNLARIRREYDFKLRLASEECDHLSNTLRERLAKSLSERKARLVKEKEHLDIADTNAI---------LLHPSQFSITnpgsPGGPSGNRKTRHARHR 219
                 ************************************************************.........**************************8888 PP

        Sds3 159 sdflqelsd............leeLqallfggepg..kenkekkkrkastrestks 200
                 +d++   s             +            +  ++++ + ++ +s+r++ ++
  KKY22141.1 220 LDDDYGSSLladtgskrkrkfE------------DglASPTREGNSTPSERKQARA 263
                 8774333322223333322222............1332222222222322222222 PP

>> DUF2508  Protein of unknown function (DUF2508)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.0   0.00012      0.53       4      45 ..     429     470 ..     427     481 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
     DUF2508   4 kkkkgklkkeedeeLleeIektkeelesakslfensvDlsde 45 
                 +k kg+++k+  ++L + +ek ++ +++++++++++ D+sd+
  KKY22141.1 429 SKPKGWVDKKLLDDLASKVEKNRDRYKKQQQIEDAANDVSDD 470
                 68899*********************************9875 PP

>> ANAPC10  Anaphase-promoting complex, subunit 10 (APC10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00044         2     132     165 ..     350     383 ..     339     394 .. 0.83
   2 ?    1.3   0.0     0.051   2.3e+02     101     126 ..     417     441 ..     409     466 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00044
     ANAPC10 132 lrvfllqiavlsnhqnGrdthvrqikiygPveek 165
                  ++   q +++s h nG+++h+++++i++   +k
  KKY22141.1 350 YHATRSQRNLISHHANGGNSHMGAMSILSDLADK 383
                 56677899*******************9976665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.051
     ANAPC10 101 gfndlkevkkvdleeptGWvkislkd 126
                 + +dl  ++++  ++p+GWv  +l d
  KKY22141.1 417 QEEDLARMAEL-TSKPKGWVDKKLLD 441
                 56677766666.59******877765 PP

>> CcdA  Post-segregation antitoxin CcdA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00015      0.66      23      57 ..     155     189 ..     145     197 .. 0.91
   2 ?   -1.6   0.0      0.86   3.8e+03      28      67 ..     241     281 ..     238     281 .. 0.57
   3 ?   -1.8   0.0         1   4.5e+03      14      28 ..     299     313 ..     295     317 .. 0.84
   4 ?   -2.2   0.2       1.3   5.7e+03      30      53 ..     439     462 ..     434     468 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00015
        CcdA  23 lSatleeaLaeevkeekaerwkeenreaieelNrf 57 
                 lS tl e La+ + e+ka+  ke++   i++ N++
  KKY22141.1 155 LSNTLRERLAKSLSERKARLVKEKEHLDIADTNAI 189
                 9********************************97 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.86
        CcdA  28 eeaLaeevkeekae.rwkeenreaieelNrfveehGlfsde 67 
                 e++La   +e +++ +++++ r+  +++++    + lfsd+
  KKY22141.1 241 EDGLASPTREGNSTpSERKQARALAQQSASALSFNSLFSDK 281
                 55566666644333134455566666677777777777775 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1
        CcdA  14 aqAralgiNlSatle 28 
                 a+ ++lg N Sat++
  KKY22141.1 299 ATSKRLGANNSATSN 313
                 7789********986 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1.3
        CcdA  30 aLaeevkeekaerwkeenreaiee 53 
                 +L++ + + ++ r + ++++ ie+
  KKY22141.1 439 LLDDLASKVEKNRDRYKKQQQIED 462
                 455555555555555566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1236  (0.0689386); expected 358.6 (0.02)
Passed bias filter:                      606  (0.0338); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3823.12
//
Query:       KKY22142.1  [L=1221]
Description: putative zn cluster transcription factor rds2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-29  103.6   0.4    1.5e-28  100.1   0.2    2.8  2  SPO22           Meiosis protein SPO22/ZIP4 like
  ------ inclusion threshold ------
       0.12   12.0   0.4       0.47   10.1   0.1    2.2  3  Sirohm_synth_C  Sirohaem biosynthesis protein C-terminal
       0.24   11.4   1.6        3.2    7.8   0.1    2.8  3  TBPIP           TBPIP/Hop2 winged helix domain


Domain annotation for each model (and alignments):
>> SPO22  Meiosis protein SPO22/ZIP4 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   0.2   2.5e-32   1.5e-28       1     248 [.     422     654 ..     422     656 .. 0.93
   2 ?   -1.0   0.0      0.16   9.7e+02      30      68 ..    1110    1148 ..    1087    1167 .. 0.79

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 2.5e-32
       SPO22   1 lAwkegdldlAehmlskakceenllrldpeeaeeLarllyniGksll.skkkyeeavkWLqraldilekqesesksssdlselrlsvlrllarayleld 98 
                 lAw+++++dlAe  ++    + +l +++p+ +e L +l++++Gk+ll ++k+ + av WL+r +++le   +++ ++sd  +lrl vl++ +ra++ ld
  KKY22142.1 422 LAWRKSRIDLAEQHFQG--LDMRLPKQNPHITEALLDLFLEMGKQLLeDRKDRDLAVVWLRRGYELLE-IINMEDTTSDMPDLRLGVLHTYVRALM-LD 516
                 7****************..89**************************9999999**************.777777778******************.7* PP

       SPO22  99 qeesyekalkavellqkeygkkehpsllllklkill.kreadeeeieealeemidsvelseanfklilslikrlaeksaalavrvldylldrklsfers 196
                 q++   ++ ++v++l+k+yg   + ++ ll l+ l+  +++d + ++e  +  +            ++  i++l + +a+la+++l  +l+  ls ++ 
  KKY22142.1 517 QSQPSAEVNRIVNILEKDYG--SKLAVQLLSLERLSrEKGVDAQRYYEGGTMAC-----------GLMYQIHQLNKSNATLALNALGWVLKYRLSKSGL 602
                 ********************..99**********99778888899999888888...........3899**********************55654555 PP

       SPO22 197 edvvekllvalfflltqskkeedaiealedilaalehslgkqlskeaasalh 248
                 + +vek++v+l+++l+ s+ +++  +   ++l+a +++++k+ls+ea+  ++
  KKY22142.1 603 NGLVEKAIVTLIWILSLSEPSKETFDGTASVLTATSETWKKSLSTEATGGCL 654
                 55***************999999************************99887 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.16
       SPO22   30 eeaeeLarllyniGksllskkkyeeavkWLqraldilek 68  
                   e+e L+ +l+n +++++  ++  +  ++ +ra +i + 
  KKY22142.1 1110 IELEFLSTTLFNHAVDMYVMNQDVAGKQYARRAVEIADI 1148
                  38999*************888888888888888888774 PP

>> Sirohm_synth_C  Sirohaem biosynthesis protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.8     1e+04      52      63 ..     173     185 ..     173     187 .. 0.79
   2 ?   -3.7   0.0       1.6   9.8e+03       8      26 ..     743     761 ..     743     763 .. 0.81
   3 ?   10.1   0.1   7.8e-05      0.47      21      63 ..     796     838 ..     778     842 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.8
  Sirohm_synth_C  52 eedmekLl.emye 63 
                     ee+m+kLl + y+
      KKY22142.1 173 EERMNKLLkAKYD 185
                     689*****77776 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.6
  Sirohm_synth_C   8 iekvgkLRkkLReiapdqe 26 
                     i+++  LR  LR + p++e
      KKY22142.1 743 INTLALLRCTLRLLIPGTE 761
                     677889******9998875 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 7.8e-05
  Sirohm_synth_C  21 iapdqeegpkRMkWmskvcdswsleelaeldeedmekLlemye 63 
                      ap++e++ k M+W sk c +  ++ +   d+ +++kL ++y+
      KKY22142.1 796 KAPSKEQNLKEMEWFSKYCYNVIVKYCTAWDTGSIQKLCKVYD 838
                     588999999*****************************99986 PP

>> TBPIP  TBPIP/Hop2 winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1   0.00053       3.2       6      28 ..     201     223 ..     198     229 .. 0.89
   2 ?    1.4   0.0      0.05     3e+02       6      46 ..     510     553 ..     507     560 .. 0.71
   3 ?   -3.1   0.0       1.3     8e+03       4      20 ..     780     796 ..     779     803 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00053
       TBPIP   6 vleylqeqnrPfsvqdvvanlqk 28 
                 +++y+++  rP s+q + + l k
  KKY22142.1 201 LQQYMEKHMRPASKQKILKQLDK 223
                 689***************99976 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.05
       TBPIP   6 vleylqeqnrPfs.vqdvvanlqkklg.Ktavqk.aLdeLvdeg 46 
                 v +++ +q +P + v+ +v+ l+k +g K avq   L+ L+ e+
  KKY22142.1 510 VRALMLDQSQPSAeVNRIVNILEKDYGsKLAVQLlSLERLSREK 553
                 778999999997637889999***77526666642578888776 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.3
       TBPIP   4 elvleylqeqnrPfsvq 20 
                 + + ++ q++ rP+s++
  KKY22142.1 780 ASISQLQQDSQRPQSAK 796
                 6788999999****985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       923  (0.0514808); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.50
# Mc/sec: 7378.49
//
Query:       KKY22143.1  [L=667]
Description: putative kinetochore protein fta7 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-37  128.6  10.4    2.6e-37  128.6  10.4    2.6  2  CENP-Q    CENP-Q, a CENPA-CAD centromere complex subunit


Domain annotation for each model (and alignments):
>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   4.9      0.83   1.5e+04      83     130 ..     356     415 ..     285     427 .. 0.62
   2 !  128.6  10.4   1.4e-41   2.6e-37       3     168 .]     490     648 ..     489     648 .. 0.95

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 0.83
      CENP-Q  83 rkeklkkehvllqesdseelslleassdevlgea............sgtvfsdlepelde 130
                 +k+++kk  +  + s+s+++++ +as+ +++++               + ++ ++++lde
  KKY22143.1 356 DKKRRKKNSPRPRLSESQKKENHKASEAKRRARIekaqlrlftlvpGMKLSQAFKKKLDE 415
                 333444433333333333333333333333333333344444444444444444444444 PP

  == domain 2  score: 128.6 bits;  conditional E-value: 1.4e-41
      CENP-Q   3 lrkLarlpfPpatqsdggkekeldfeklldekaaleaqLspelhslelLeaeiekeeralerdyeaLreLeknakaearerkeklkkehvllqesdsee 101
                  +++a++pfPp     g +e+++d+eklld ++ale+qL++++hs++lL  eieke+ral  d+++L+ Le+  ++  + r++++k+ h+l+++  +e+
  KKY22143.1 490 SKRIAKMPFPP-----GSQESDFDLEKLLDTNHALESQLTANNHSISLLHLEIEKEKRALDDDQQQLEVLEEALRRTDAMRRKQAKNFHPLAKTMLTEP 583
                 689********.....*****************************************************************************999999 PP

      CENP-Q 102 lslleassdevlgeasgtvfsdlepeldeellpllqqLgshLesmrgnlaqlegllpalerskaaLq 168
                  s +  +++++  +  +t+ + l+  +d+++++ll qL+shL+sm++n+a + g+ +a+++s+a L+
  KKY22143.1 584 PSMDAIKEQNMPIHNLDTDLHILQ--KDPDIAALLRQLRSHLDSMEANTAAINGIEEAIAKSQATLD 648
                 999999998888777888888887..6**************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1661  (0.0926432); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4582.73
//
Query:       KKY22144.1  [L=191]
Description: putative multidrug resistance protein fnx1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.08   12.3   0.6        2.8    7.3   0.1    2.3  2  CCB1      Cofactor assembly of complex C subunit B
      0.086   11.7  17.6      0.037   12.9  14.4    1.7  2  MFS_1     Major Facilitator Superfamily
       0.85   10.2   0.1       0.85   10.2   0.1    2.7  2  TcpE      TcpE family


Domain annotation for each model (and alignments):
>> CCB1  Cofactor assembly of complex C subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1   0.00046       2.8      64      98 ..       7      38 ..       2      58 .. 0.73
   2 ?    3.1   0.0    0.0089        53      74     107 ..     146     181 ..     133     185 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00046
        CCB1 64 eketvtfeGlvapslflAifLtllaalgllclaLV 98
                +++t+t+ G+++p l+l   L +  +++   l++ 
  KKY22144.1  7 TGHTITYTGRIKPTLVLGYTLIFAGLIS---LSFM 38
                689***************9998865554...4444 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.0089
        CCB1  74 vapslflAifLtllaalgll..claLVlsilvpelg 107
                 v    +lA+ +t++  + ++  +l+LV+ i +p+l+
  KKY22144.1 146 VIQAYSLAMRVTFMQGIVTAglALSLVIFIRLPRLT 181
                 555678888899988776551156678888788776 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9  14.4   6.2e-06     0.037      47     147 ..       2     106 ..       1     116 [. 0.78
   2 ?   -0.5   0.1     0.074   4.4e+02     117     136 ..     154     173 ..     142     183 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.2e-06
       MFS_1  47 vaslplGrlsdrfGrrr.vlllglllfalglllll.f.asslw.l.llvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpll 140
                 va++ +G+ ++  Gr + +l+lg++l ++g l+ l f + +l+ +  +++ +l  +g+g++fp++ ++  ++++ e+ + a++ l+++ +lG+i+g  +
  KKY22144.1   2 VAAFATGHTITYTGRIKpTLVLGYTLIFAG-LISLsFmSGGLPtYvYAWFVALPMIGQGFSFPTVSIAQLAVTSIEDMAVATSTLMLFRNLGVIMGVSF 99 
                 788888999999999999999999999999.44444525555544155555588888899999999999999999999999999999999999999999 PP

       MFS_1 141 ggllass 147
                 ++l+a++
  KKY22144.1 100 SSLVAQN 106
                 9998843 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.074
       MFS_1 117 eergraigllsagfslGail 136
                 ++ +++ g+++ag +l+ ++
  KKY22144.1 154 MRVTFMQGIVTAGLALSLVI 173
                 44555555555555555444 PP

>> TcpE  TcpE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   3.7      0.56   3.3e+03      25      52 ..      74     102 ..      11     118 .. 0.66
   2 ?   10.2   0.1   0.00014      0.85      13      48 ..     145     180 ..     136     188 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.56
        TcpE  25 slsqiivfvlvlvlllllaslipv.ikgv 52 
                 s+++++v++ +l+l+  l+ +++v + ++
  KKY22144.1  74 SIEDMAVATSTLMLFRNLGVIMGVsFSSL 102
                 44556666666666666655555544444 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00014
        TcpE  13 qkikdfsLpfpislsqiivfvlvlvlllllaslipv 48 
                 q i+ +sL++++++ q iv++++++ l+++  l+ +
  KKY22144.1 145 QVIQAYSLAMRVTFMQGIVTAGLALSLVIFIRLPRL 180
                 77899*************************888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.48
# Mc/sec: 1199.26
//
Query:       KKY22145.1  [L=160]
Description: hypothetical protein UCRPC4_g03332 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1060.01
//
Query:       KKY22146.1  [L=680]
Description: putative urea active transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-20   71.8  23.7    4.8e-20   71.8  23.7    1.5  2  SSF       Sodium:solute symporter family
  ------ inclusion threshold ------
        3.6    7.6   4.4        1.7    8.6   0.4    2.6  2  Syndecan  Syndecan domain


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1      0.36   3.2e+03     347     357 ..      31      41 ..      12      59 .. 0.53
   2 !   71.8  23.7   5.3e-24   4.8e-20       1     406 []      62     478 ..      62     478 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.36
         SSF 347 vlvvislaill 357
                 v++   +a+++
  KKY22146.1  31 VVIGFIIALVM 41 
                 11112222222 PP

  == domain 2  score: 71.8 bits;  conditional E-value: 5.3e-24
         SSF   1 yflagrsltgfvlglslaasnisaasfvGlaGavaasGlav.vllelgalllvl.llllllaerlrnagalTlpdylskRfkgkrilvylsalslllvi 97 
                 +++a+rs+    ++ ++ +s + +  ++G   +++  G a+ ++++ g  ++++ ++ll +a ++r   a Tl ++++ R++    +v++  +  l+  
  KKY22146.1  62 FMTANRSVRTGLTASAVVSSWLWSTAMLGSTFVGYNFGAAGpFWFAAGCSPMIVfFSLLGIACKMRIPEAHTLLEIVRIRYGTTGHIVWI--VLCLINN 158
                 789***********************************9874789999987655156667999*******************99955555..5568888 PP

         SSF  98 tlklsvdlvggaklielalGlnyetavlllaaltalYtviGGllAvvytdtiqavlmlvgal..illiivllevGgleslveklkeaapkv.vdlltpd 193
                 +++++  l+g+ + i  + G+ + +a +ll + ++lYt +GG+ A+ +td   ++++l+ a+  ++  +++ e+G+   l + +  aa++  v  ++ +
  KKY22146.1 159 IIAVANMLLGASAAITALTGMHIIAATFLLPVGVILYTSVGGIKATFLTDYFHTFVILIIACyfTVKTFTIPEIGSPGDLYDLVVDAANRHpVSGNHDG 257
                 8999999***********************************************988776661145568889***988888888888887654444433 PP

         SSF 194 slkllrd...pltalslwlglvlGvagl..philvRflaak....dakailkgvlk.ltivlilvligmisiilfaiklagavpkavgtevgvsniayp 282
                 s+ +      ++   ++ ++  +G++++      v+ ++a         i+ g+ + ++++ +  l+   +++l     +   p+ ++++   + + +p
  KKY22146.1 258 SY-MTMTskgAILFGIIHILANFGLVIMdtG-FFVKAFSAApeavVPGYIIGGIAYfAIPWCLGTLMSFTALGLENTPRFPTYPRRMTATEVSNGLPLP 354
                 33.3333000333334445555565555422.33333333323322233444433224555555555567778888888888889999988899999** PP

         SSF 283 eLvvkllpnllaGlllavmlAaimstltslllsassaftkDlYkkirrkasakekelvgvsriivlvvislaillavqeeqkg.vlklvelafaglasa 380
                   ++++ +++ a+ +l +++ a+ stl+++++s ss+++ D+Y + + +  a+++ +++ s i v+  +  + +     +  +  l    +  ++l+ +
  KKY22146.1 355 YAAIAIAGKGGAAGVLLIVFMAVTSTLSAQVISVSSIISFDIYRRYFNRR-ASDRDVIRWSHIGVVFFGLFSACFSTALHYGNvDLGWTLYFLGVLTCP 452
                 ******9998666666677778***********************99998.8999999999999998888887777777777744677888999***** PP

         SSF 381 vlavillalfwkrvneqGAlagliiG 406
                  +   ++++ wk+  +  A ++ ++G
  KKY22146.1 453 GIFPTVFTILWKKQSKLAAVVSPLLG 478
                 *************9999998887776 PP

>> Syndecan  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.4   0.00019       1.7      11      38 ..      24      51 ..      16      62 .. 0.80
   2 ?   -2.4   0.3      0.53   4.7e+03      28      30 ..     373     375 ..     357     398 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00019
    Syndecan 11 aviggvvvgllfaillvlflvYRmrKKD 38
                av   vvv + f+i lv++ v R+ KK 
  KKY22146.1 24 AVGYVVVVVIGFIIALVMIFVTRLMKKT 51
                5555677777899***********9995 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.53
    Syndecan  28 lfl 30 
                 +f+
  KKY22146.1 373 VFM 375
                 332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1158  (0.0645881); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 4588.42
//
Query:       KKY22147.1  [L=492]
Description: putative xenobiotic compound [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-60  205.5   0.5    1.7e-60  205.1   0.5    1.1  1  Bac_luciferase  Luciferase-like monooxygenase
    0.00016   21.5   0.0      0.027   14.3   0.0    2.3  2  Amidohydro_2    Amidohydrolase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.1   0.5   1.9e-64   1.7e-60       9     313 ..      46     419 ..      42     420 .. 0.87

  Alignments for each domain:
  == domain 1  score: 205.1 bits;  conditional E-value: 1.9e-64
  Bac_luciferase   9 trqggalgaasaslrylvelaraaEelGfdavwvaehhggpgga..................ldaftllaalaaaTerirlgtavtplytrhPav 85 
                     +r++ +++++  ++++ v+la+++E+ +f+++++a+ +g  +                     ++++  +a+aa+Te++++g++v ++y  +P++
      KKY22147.1  46 WRHPKDQSYNFNKVQHWVKLAQLLEKGKFHGMFIADVLGAYDVYkgpqnpdpaivsgaqwpvNEPLAAVSAMAAVTENLGFGVTVATTY-EQPYH 139
                     7777777777799*************************9877779********************************************.***** PP

  Bac_luciferase  86 lAqqaatLdhlsgGRfglglgtggpaveerrfGv....dhderyarlrEfvevlrrlwrg......................eevdfeGeffsvk 154
                     lA+   tLdhlsgGR+g++++tg   + +r+ G     +hderya ++E+v+v+ +lw++                      +++++eG++++v 
      KKY22147.1 140 LARRLSTLDHLSGGRVGWNIVTGYLDSAARNLGHteqpEHDERYAIAEEYVDVMYKLWQSswrddavkldrqkaiytdptlvRKINHEGKYYKVP 234
                     **********************************************************779999*****************9999********** PP

  Bac_luciferase 155 galllprpgqgpiP.vyvaaaspaglelaarhadglllageppeeaaelierlragaae.agrdpadirvgisltvivadteeeAraearaliag 247
                     g+++  +++q+  P ++ a++s ag  +aa+ a+++++ag +p  +a+ i+++r  a+e +grdp ++++++ l +++++t+eeA+a+++++++ 
      KKY22147.1 235 GPHICEPSPQR-TPvIMQAGTSKAGKTFAAKNAEAIFVAGHSPSVVAKNIAEIRTLAKEqFGRDPTSVKFLALLCPVLGKTPEEAQAKYEEYVSF 328
                     ***99999888.9967777777*********************************776559*******************************977 PP

  Bac_luciferase 248 ld.................fyaldsegagreaeaa....eiqeeedan..lwagaadavpdelvaatal.......vGtpeqvaerlaa.yaeag 311
                     +                  +y +d+e+ + e +a     e + ++++   +w ++  a     ++   +       vGtpe+va+++++ ++ea 
      KKY22147.1 329 GSedgalalfggwtgidlsQYDDDQELRHVESNAIrsavEGWSKSSPTvsRWTKHTVAN---HIK---VgglgatvVGTPEHVADEMERwVQEAD 417
                     779****************7777777777777777333333333333300333333332...222...12234567*************777777 PP

  Bac_luciferase 312 vd 313
                     vd
      KKY22147.1 418 VD 419
                     66 PP

>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0019        17      79     132 ..      94     157 ..      77     267 .. 0.82
   2 !   14.3   0.0     3e-06     0.027      71     116 ..     378     423 ..     347     432 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0019
                   HHCTTCBECEEECTSSHCHHHHHHHHHHHHTTECEEEEESSTTTCCTTTCGGH...........H CS
  Amidohydro_2  79 krpdrfvggaavvpldpedaaaeleraveelgfkGvrlnphvggddllgdrld...........r 132
                   + ++ +v ga++++++p +a+ ++    e+lgf Gv + + +++ ++l +rl+           +
    KKY22147.1  94 NPDPAIVSGAQWPVNEPLAAVSAMAAVTENLGF-GVTVATTYEQPYHLARRLStldhlsggrvgW 157
                   4678999**************************.**********999999998666666665551 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 3e-06
                   HHHHHHHHHHCTTCBECEEECTSSHCHHHHHHHHHHHHTTECEEEE CS
  Amidohydro_2  71 nrvlaeaakrpdrfvggaavvpldpedaaaeleraveelgfkGvrl 116
                    r++++  ++   ++g++a v++ pe +a+e+er+v+e+ + G++l
    KKY22147.1 378 SRWTKHTVANHIKVGGLGATVVGTPEHVADEMERWVQEADVDGFNL 423
                   689999999999*******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3432.85
//
Query:       KKY22148.1  [L=560]
Description: putative dihydroxy-acid dehydratase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     1e-138  463.2   0.0   1.6e-119  399.9   0.0    2.0  2  ILVD_EDD  Dehydratase family


Domain annotation for each model (and alignments):
>> ILVD_EDD  Dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.0   1.6e-21   2.8e-17       1      87 [.      60     141 ..      60     143 .. 0.94
   2 !  399.9   0.0  8.7e-124  1.6e-119     137     517 .]     142     543 ..     140     543 .. 0.94

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 1.6e-21
    ILVD_EDD   1 kpiigiansyselvpchvhlkelaeavkegveeaggvpaefntigvsDgiamgeegmr.ysLpsReliadsvetmleaqllDalvlis 87 
                 +piigi+n+ys+++pch+++ +l +a+k+gv+ +gg+++ f+ti++      +e++ + +s++ R+l+a+++e+m++aq++Da+++i+
  KKY22148.1  60 RPIIGIINTYSSFNPCHANVPQLIDAAKRGVQLNGGLAIDFPTISL------HESFSSpTSMFLRNLMAMDTEEMIKAQPVDACIMIG 141
                 7*********************************************......555555689999**********************98 PP

  == domain 2  score: 399.9 bits;  conditional E-value: 8.7e-124
    ILVD_EDD 137 agkiseeeleeleeaacpgaGsCsgmgTAntmaclaealGlslpgsasipatsaerkelaeeagkrivelvekdlkprdiltkeafeNAivvllalGGS 235
                 ag+++ ee+++++e+ +p+ G+C++mgTA+tmac++ alGl+    as+pa+sa+r ++aee+g+++v+++  + +p+d+ltke+f NAi+vl a+GGS
  KKY22148.1 142 AGELDIEEISDINEQLAPTTGTCGVMGTASTMACITAALGLMPLRGASAPAVSATRLRIAEETGANAVAVAAAKRRPQDLLTKESFINAIIVLQAIGGS 240
                 7999*******************************************************************999************************* PP

    ILVD_EDD 236 tNavlHllAiArea...gveltlddfdelsrkvpllaklkPsgkydmedlhraGGvpavlkeLlkagllhgdvltvtgktlaenleeaev....keqdv 327
                 tNa++Hl+Ai +++   +  ++ld+fde++r++pll++lkPsg+ +m+d+h+aGG+ a+l++L+   llh d+ t++gktl++ l++a +     +++v
  KKY22148.1 241 TNAIVHLMAIINRHpylQGVIDLDTFDEIGRRTPLLVDLKPSGDNYMTDFHNAGGMLALLHKLR--PLLHLDARTISGKTLGQVLDAAPFrtfpFSEQV 337
                 *************987755689******************************************..78*****************99777778899*** PP

    ILVD_EDD 328 irplekplskegglavLkGnLapeGavvKtsaveeel.lkfegpArvfdseeeaveailk..gkikagdvvviryeGPkGgpGmpEm..lkptsallgk 421
                 irpl++pl++ ++l vL+GnLap+Gav+K+sa ++++ lk++gpA+vfd   ++++++ +   +i++++v+v++  GP G+pGmpE+  +  +++l++k
  KKY22148.1 338 IRPLSNPLYSCSSLIVLRGNLAPQGAVMKASASKDRRlLKHSGPAVVFDGPADLAKKLDDpfLDITENSVLVLKGIGPIGNPGMPEAglIPLPRKLAAK 436
                 ********************************997666********************886559***********************988999****** PP

    ILVD_EDD 422 glgkkvalitDGRfSGaskglvighvsPEAae.gGpialvedGDiieidiekrtlelevseeelaaRraawkp.ekkv..........ktrgllakyak 508
                 g+ k++ +i+DGR+SG++ g++++h+sPE+a+ +++ a+++dGDii++d+++r++e+++seee+ +R ++ +    k+          ++rg+  +y++
  KKY22148.1 437 GV-KDMLRISDGRMSGTAGGTIVLHISPESARnESAFAVLRDGDIISCDADQRRIEVDISEEEVIRRLKQRSDlLAKEgkgnlmterlTRRGYRGLYER 534
                 *9.**************************998689********************************98666542222467788888666********* PP

    ILVD_EDD 509 lvssaseGA 517
                  v++a+eGA
  KKY22148.1 535 CVNQAHEGA 543
                 ********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3901.26
//
Query:       KKY22149.1  [L=732]
Description: hypothetical protein UCRPC4_g03336 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-21   77.5   1.4    1.8e-21   76.9   1.4    1.2  1  HMGL-like  HMGL-like
    0.00023   21.2   0.1      0.017   15.2   0.0    3.2  2  MMR_HSR1   50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   1.4     2e-25   1.8e-21     154     262 ..       4     118 ..       1     119 [. 0.95

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 2e-25
                 HHHHHT-SEEEEEETTS---HHHHHHHHHHHHHHS-.GGGEEEEEB-TTS-HHHHHHHHHHTT--EEEEBTTS--......SSBBB-BHHHHHHHHHHT CS
   HMGL-like 154 aaeeaGatriniaDtvGvltPneaaelisalkervkdkvilsvHcHndlGlAvantlaAveaGadrvdgtvnGlG......eraGnaaleelvaaleal 246
                  + e+G++++++aDt G+ t    ++l+++l++    + +l++H+H+++G+A+ nt++++e G++  d++v GlG      +++Gn+a+e++v +l+ l
  KKY22149.1   4 SLLEMGCDEVSVADTTGMGTAPRTRKLLQTLSSAGILNEDLALHFHDTYGQALVNTMVGLEHGIRTFDSSVGGLGgcpyskGATGNVATEDMVHMLHSL 102
                 6789****************************98776799*********************************************************** PP

                 T-B----HHHHHHHHH CS
   HMGL-like 247 gvdtgldlqklrsiaa 262
                 g++tg+dl+k+ +i++
  KKY22149.1 103 GLQTGIDLEKMAEIES 118
                 ************9986 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.21   1.9e+03      46      84 ..      11      50 ..       4      69 .. 0.65
   2 !   15.2   0.0   1.9e-06     0.017       4      58 ..     370     464 ..     369     491 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.21
                EEEEEEECGGCSSHHHHHHHHHHHHHH..HHCTSEEEEEEE CS
    MMR_HSR1 46 keielvDtpGliegaseekglgkafla..leeadlillvvd 84
                +e+ ++Dt G + +a + ++l +++ +  + + dl+l+  d
  KKY22149.1 11 DEVSVADTTG-MGTAPRTRKLLQTLSSagILNEDLALHFHD 50
                5688999999.664555555555555544444577777777 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.9e-06
                 EEESTTSSHHHHHHHHH...................T....................STEEESSSTTSSSSEEEEEEEETT.EEEEEEECGGCSS CS
    MMR_HSR1   4 ivGrpNvGKStLinalt...................g....................ekaivsdkpgtTrdinegrvklkg.keielvDtpGlie 58 
                  vG+ NvGKS L+                       +                    +   vs+ pgtT  +++  ++ +  k+ el+D+pGl+ 
  KKY22149.1 370 MVGKVNVGKSNLFEVVYpkgngnaepdfdqlkeeanRlgneisslllppsqelvpypTLPLVSSLPGTTASPIRVPFAASTgKRGELIDLPGLFR 464
                 59**************97777777666666666555055566666666666666654588***************9995444999*******863 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.47
# Mc/sec: 4638.80
//
Query:       KKY22150.1  [L=628]
Description: putative alpha amylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.3e-116  389.9   0.9   1.4e-116  389.7   0.0    1.4  2  Alpha-amylase  Alpha amylase, catalytic domain
  ------ inclusion threshold ------
      0.035   13.2   0.0      0.074   12.1   0.0    1.4  1  hDGE_amylase   Glycogen debranching enzyme, glucanotransferas


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  389.7   0.0  1.6e-120  1.4e-116       1     334 [.      31     390 ..      31     393 .. 0.97
   2 ?   -3.5   0.2      0.63   5.7e+03      94     127 ..     558     590 ..     540     594 .. 0.49

  Alignments for each domain:
  == domain 1  score: 389.7 bits;  conditional E-value: 1.6e-120
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHSTTSGGG CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifkspqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkkkgepkr 96 
                    GD  Gi++kLdYlk+LGv+ iw+sP+++spq d+gYdi++y++++p fGt +d++ Li+kah +g+++ilDlV+NHtsd+h+wfkes+ +k++pkr
     KKY22150.1  31 GDVPGITSKLDYLKDLGVDIIWVSPMYDSPQVDMGYDISNYEEVYPPFGTVADMEDLIEKAHGRGMRIILDLVINHTSDQHAWFKESRLSKDNPKR 126
                    9*********************************************************************************************** PP

                    CCC-E..........ESS-STTC-TTTTCSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCC.CCCCCCTTT-SEEEETTCCCTTTCCCC... CS
  Alpha-amylase  97 dyyiwkegk....eekeppnnwkslfdgsaweydekaqeyylhlflkklpdLnteneevrkelkd.vvkfwlekgidGfRlDvvkhvskveal... 184
                    d+yiw++ +    ++++ppnnw+s+f+++awe+de +qeyylh f+ ++pdLn+ene+ r++++d +++fwl+kg+dGfR+D+v+++sk ++l   
     KKY22150.1 127 DWYIWRPTRygenGSRQPPNNWRSFFSEPAWEWDEHTQEYYLHCFATQQPDLNWENEDARNAIYDsAIRFWLNKGVDGFRVDTVNMYSKGSELpdv 222
                    ******999999999**************************************************************************7777*** PP

                    ...............HCCHCCHHHHHHHHHHHTCCGTT-EEEEE-.TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS-HHHHHH CS
  Alpha-amylase 185 ...............esngeflheftqalnetvasrkevmtvgEv.ssdasedlrvyttearlelemvldfphldvaqkakikeqlksisakklke 264
                                     ng+++hef  ++n++v++++++mtvgE  +  +  +  +y+  + ++++m ++f   d++ + + k ++++ s+  +k+
     KKY22150.1 223 pildpksfyqpaysaICNGPRMHEFLREMNTKVFNQYDTMTVGELpWTPDPAHVLRYVGSGDKQINMCFQFDLCDLGVGRDHKFNMQPWSVSSIKQ 318
                    *************9999***************************8578899999****************************************** PP

                    HHHHHHHHS-CCCTTCEEES--TTS--HHHHTTSSTTTT..HHHHHHHHHCCCTSSSEEEEETTCCCT---- CS
  Alpha-amylase 265 llkkwlkaleeaaeeavtflgnHDqeRilsrlgddsaea..ekklklaaillltlrGvpviYyGeEigmtgg 334
                    +l+kw++ + +++ +++ fl+nHD+ R++sr++dds+    + ++k++ ill tl+G+ +iY+G+Eigm ++
     KKY22150.1 319 ILSKWQTFHLNTDGWTTAFLENHDNGRSISRYADDSTPLtrTLSAKMLCILLTTLTGTLFIYQGQEIGMVNA 390
                    ************************************6448899**************************996 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.63
                    GGGCCC-E.......ESS-STTC-TTTTCSCEECT CS
  Alpha-amylase  94 pkrdyyiwkegk.eekeppnnwkslfdgsaweyde 127
                    +k+ ++   eg+ +e e pn+ k  +++++we+++
     KKY22150.1 558 QKAIVALNFEGTgKEFEFPNDEK--NEKEDWEWEW 590
                    22323333333245555666655..7777777765 PP

>> hDGE_amylase  Glycogen debranching enzyme, glucanotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.3e-06     0.074      24     112 ..      36     116 ..      28     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.3e-06
                   HHHHHHHHHHTT--EEEES--EEE-TT--TTSEEEEEEE-TTT-.....SSC.HHHHHHHHHHHHHH--EEEEEE--SEEETT-CCCCC CS
  hDGE_amylase  24 WekvlkeikekgYnmiHftPlqelGesnSpYSiadqleldkelfeekdkeekeedveklvkklekeygllsltDvVlnHtannskwlee 112
                    +++l+  k+ g ++i  +P+    + +  Y i++  e+ + +        +++d+e+l++k++   g+  + D+V nHt+++ +w +e
    KKY22150.1  36 ITSKLDYLKDLGVDIIWVSPMYDSPQVDMGYDISNYEEVYPPFG-------TVADMEDLIEKAHG-RGMRIILDLVINHTSDQHAWFKE 116
                   56778888999999999999999999999999999999999884.......67899*****9976.6999****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 4013.10
//
Query:       KKY22151.1  [L=573]
Description: putative mfs maltose [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-87  292.8  22.7    5.1e-87  292.6  22.7    1.0  1  Sugar_tr    Sugar (and other) transporter
    5.4e-18   65.0  28.7    1.6e-15   56.9  21.2    2.2  2  MFS_1       Major Facilitator Superfamily
  ------ inclusion threshold ------
        2.9    6.6  15.1       0.02   13.8   5.0    2.1  3  MFS_1_like  MFS_1 like family


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.6  22.7   8.5e-91   5.1e-87       3     452 .]      71     524 ..      69     524 .. 0.96

  Alignments for each domain:
  == domain 1  score: 292.6 bits;  conditional E-value: 8.5e-91
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkns 101
                 +v +++ +++gYd+ +++ f +l +f k++g    ++++  s+ + + +++ ++vG+i+G + ag + +++G++k+++ a ++    ++l+++a+   s
  KKY22151.1  71 VVLSTAIVMEGYDVVLLANFFALDSFNKRYGTLGPDGEYTISAPWKSGLTNGASVGEILGLYAAGVVQQKIGYRKTMIGALAMITCTIFLTFFAQ---S 166
                 55666669****************************999889*****************************************************...* PP

                 -TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHH CS
    Sugar_tr 102 vevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylve 200
                 + +l+vg +l+Gi++G+++++++ y+s ++p +lR +l+++ +l+++fG+l+++++  ++ + ++++g+ri+++lq++++l +li+ +f+PESP++lv+
  KKY22151.1 167 LPMLLVGEILCGIPWGVFQTMTTAYASDVCPVALRAYLTTYVNLCWVFGQLIGSGVLRAMLERNDQWGYRIPFALQWMWPLPILIGCIFAPESPYWLVQ 265
                 ************************************************************666666********************************* PP

                 TT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH...........HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HH CS
    Sugar_tr 201 kgkeeeakevlaklrgeedadrelaeekdsleaeqeee......kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks..ll 291
                 kgk  +ak  l++l +++d++ ++++ +++++++ e e      +++w+++++   +++r+ i++v++++qq++G   +m ys++++e +gl++   + 
  KKY22151.1 266 KGKIADAKHALRRLTTKSDPTFDADKTIAMMQHTNEIEkevtagTTYWDCFKGV--NLRRTEIACVTWLVQQFCG-STFMGYSTVFYEAAGLDDVyaFD 361
                 *************************99999999988889999999*******99..79*****************.99*****************9999 PP

                 HHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHH CS
    Sugar_tr 292 vtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalai 390
                  ++  + + ++ t+ +++l+ ++GRRtl++ G+a+ +i+++++g  + l + ++++a+ ++  ++++f++ + l++gpv++ lv+E+ +++++s +  +
  KKY22151.1 362 LSMAQYGLGAIGTMGSWWLMGYAGRRTLYMYGTAILFILLMVIG-FVSLAPRSNNGANWAIGSLLLIFTFTYDLTVGPVCYSLVAEIPSTRLKSQTVIL 459
                 9******************************************9.66667777689999999************************************* PP

                 HHHHHHHHHHHHHHHHHHHHCHHH...T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 391 avavnwlanflisllfpiiteaig...ggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 a +  ++  +++++++ +++ a     g+ +++++ag ++l +i++ff +pe kgrt  e++ lf
  KKY22151.1 460 ARNFYNIGGIVTNIVTNYMLTATAwnwGAHSGFFWAGTCLLCVIWIFFRLPEPKGRTYGELDVLF 524
                 *********************999999*******************************9999876 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9  21.2   2.7e-19   1.6e-15      28     329 ..     110     448 ..      66     460 .. 0.69
   2 !   16.1   1.2   6.9e-07    0.0041     103     183 ..     437     517 ..     435     549 .. 0.77

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 2.7e-19
       MFS_1  28 gispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigll 126
                 +is+   + l+ + ++g +++ + +G++ +++G r++++ +l++   +++l +fa+sl++llv+ +l+G+  g++ ++  a+++d+ p   r+  + ++
  KKY22151.1 110 TISAPWKSGLTNGASVGEILGLYAAGVVQQKIGYRKTMIGALAMITCTIFLTFFAQSLPMLLVGEILCGIPWGVFQTMTTAYASDVCPVALRAYLTTYV 208
                 455555555778899*********************99998888888855555878888**************************************** PP

       MFS_1 127 sagfslGailgpllgglla...sslgWravfyilaivsllafv.lfllllpeepperkrkspkeee..............................kgt 191
                 ++++ +G ++g ++  +++   +++g+r +f +     l  ++ +  ++ pe+p     k ++ +                               +  
  KKY22151.1 209 NLCWVFGQLIGSGVLRAMLernDQWGYRIPFALQWMWPLPILIgC--IFAPESPYWLVQKGKIADAkhalrrlttksdptfdadktiammqhtneiE-- 303
                 ***********8888888723356779999999998888886634..66666666666666666657777787777777777777776666655442.. PP

       MFS_1 192 gpaplvp.......awkallkdpvlw..illialllfffgfsglltllplylqevlgls.....glllaglllallalvgailallagrlsdrlgrrrr 276
                       +        w  ++  +     i+ +++l+  f+ s+++ +++++  e  gl+      l +a   ++l+a++++++  l g+  +r+    +
  KKY22151.1 304 ------KevtagttYWDCFKGVNLRRteIACVTWLVQQFCGSTFMGYSTVF-YEAAGLDdvyafDLSMA--QYGLGAIGTMGSWWLMGYAGRRTLY--M 391
                 ......022234453444444442214445555555556777777777776.55555555442224444..5999999998888889998888333..5 PP

       MFS_1 277 lllallllllaalglallavtssavllll...vlvliGfglgfv.fpsllalasdla 329
                    a+l++ll+++g++ la+ s++ + ++   +l++++f++ ++  p   +l+++  
  KKY22151.1 392 YGTAILFILLMVIGFVSLAPRSNNGANWAigsLLLIFTFTYDLTvGPVCYSLVAEIP 448
                 555555555555555555555555555555568888999777772455555554444 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 6.9e-07
       MFS_1 103 fpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWrav...fyilaivsllafvlfllllpeepperkrks 183
                  p++++l+a++ + + +++ + l+  ++++G i++ ++  +++++  W +     ++ a+ +ll+   +++ +++ p +++r  
  KKY22151.1 437 GPVCYSLVAEIPSTRLKSQTVILARNFYNIGGIVTNIVTNYMLTATAWNWGahsGFFWAGTCLLC---VIWIFFRLPEPKGRTY 517
                 6899999***99999***********************************955555555555555...4466666666555544 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   5.0   3.4e-06      0.02     270     367 ..     124     220 ..     107     226 .. 0.91
   2 ?   -2.1   1.0      0.23   1.4e+03     279     309 ..     376     406 ..     295     430 .. 0.61
   3 ?   -1.7   0.9      0.16   9.9e+02     181     247 ..     393     477 ..     370     507 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.4e-06
  MFS_1_like 270 vvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGs 367
                  v+ei  ++ a  + +k+G +k +i al +++ + +l  + +++ ++l+ e+L gi  g++  + + y+s++ p  l+a +   ++ l++ +G+ +Gs
  KKY22151.1 124 SVGEILGLYAAGVVQQKIGYRKTMIGALAMITCTIFLTFFAQSLPMLLVGEILCGIPWGVFQTMTTAYASDVCPVALRAYL-TTYVNLCWVFGQLIGS 220
                 6899*****************************99999999************************************9965.5688899999999998 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.23
  MFS_1_like 279 faeklleklGhvklliiallayilrfllyai 309
                  + +l+ + G ++l + +  + ++ ++++++
  KKY22151.1 376 GSWWLMGYAGRRTLYMYGTAILFILLMVIGF 406
                 3333444444444444444444444444333 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.16
  MFS_1_like 181 allyvlaallvisllvvlilnetekesklkvtksl....................qvllnilknpeviifllvalilgmswgiienF 247
                   ++++++l+vi +++    +  + + + ++   l                    +     lk + vi+   +  i g++ +i+ n+
  KKY22151.1 393 GTAILFILLMVIGFVS--LAPRSNNGANWAIGSLLliftftydltvgpvcyslvaEIPSTRLKSQTVILARNFYNIGGIVTNIVTNY 477
                 4444555555555544..444444444444443334555555555555555555422333445555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.51
# Mc/sec: 3372.11
//
Query:       KKY22152.1  [L=577]
Description: putative glycosyl hydrolase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-21   75.4   0.0      8e-21   74.7   0.0    1.3  1  Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal
    2.5e-19   70.0   0.0    4.7e-19   69.1   0.0    1.4  1  Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal dom
     0.0009   19.4   0.0     0.0016   18.6   0.0    1.5  1  DUF4975          Domain of unknown function (DUF4975)


Domain annotation for each model (and alignments):
>> Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.0   1.3e-24     8e-21       2     143 ..     324     489 ..     323     501 .. 0.77

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 1.3e-24
                      HHHHHTSS......EEEEE--EEE-..SEEE.........-SSSEEEEEEEEE-.....-GGGTEEEEEEEES..SS--EEEEEETTTTEEEEE CS
  Glyco_hydro_32C   2 leslrkekke....skkvevkkevknkelgs.........lsggqlelelefels....sgsagpfglkvlasedleeettiyydpsrsslvvd 78 
                      l++lr++++e    s     k +  n ++ s         +++ ++el++++++      +s++++ +++ +s+ ++  tt++++ps+++l++ 
       KKY22152.1 324 LKRLRTTAREvsipS-----KSAIPNLKSLSsnstscnldVQTCRFELTASISIPqnfiASSSKSINISISHSPTHDLLTTLSFHPSSETLTLY 412
                      567776665533222.....22222222222344568855666666655555553678899999****************************** PP

                      -TTSG...GTTT----.EEEE---...............-EEEEEEEETTEEEEEET.TTEEEEEE--...TTTTEEEEE CS
  Glyco_hydro_32C  79 Rtksgetdfkndfasg.esaplel......dg.......klkLrilvDkssvEvFvndGrtaiTsrvyPt.edstgirlf 143
                      R  s+++d  ++++s  e+ap++l      +         +++++++D+s++EvFvn Grt+i++r+yP  +   g++++
       KKY22152.1 413 RPDSSSVD--PAINSHpETAPHTLfkfsnpNApeeptieSYDVKMWLDESVLEVFVN-GRTVISTRIYPGrKRIWGAHFW 489
                      ****7555..***************997761155566668*****************.************9999999986 PP

>> Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   7.9e-23   4.7e-19      73     295 ..      12     280 ..       4     289 .. 0.76

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 7.9e-23
                      EEEE-TT-...EEEEEEEE-TCSEEEEEEEEESSTTSSEEE-TT--SB-.-TTT.STTSEEEEEEE.EET........T.TE.EEEEEEECCTT CS
  Glyco_hydro_32N  73 savvdddk...lvllYTgnvkeeeqvQnlayskdkgreftkyeenpviaekpee.ntkhfRDPkva.wke........d.gk.wvmvvgaqdkk 151
                      s ++   +     + YT  +k+  ++Q++a s+d gr++ k+++np++ae p++ +    RDP++a wk+        +  + + m+ g    +
       KKY22152.1  12 SLTAVYTSvsgSPVHYTLPYKRGCETQSIAQSTDGGRTWVKSKKNPILAEPPAHlQPCGWRDPYLAaWKSmdkalgleEgTHlYGMISGGLAGQ 105
                      43333332222335567666677**************************9888899999****9853775422222222223245666666669 PP

                      CCEEEEEEE..SSSSSEEEECCESEECC.T.........TTEEEEEEEEEEECSTT-ECEEEEEEEEC.STT..................TTTT CS
  Glyco_hydro_32N 152 kgkillYks..kdlkewelaselleskkek.........ggmwEcpdlfeldekdeeekvklvlkvspqgle..................dnts 216
                      + ++ lY    + l +w++ s l +   ++         g  +E   +++l++++   + + +++++ +g +                  +  +
       KKY22152.1 106 SPTLFLYAVprNQLDNWQFISPLINLGLNHqlsrwsgdmGQNLEAGTFMTLSDHE--GTSRDFIVAGTEGCKtdeaqttrgppqrsteisRAAR 197
                      9******987678*******9988766655667899998999************6..3333445555555555677777777788888888999 PP

                      EEEEEEEEEETTTTEEEEC....CCCCEESBSSSS-EEEEEECCTTT.CEEEEEEES-TTTHCCCCC.CTEE-EE--EEEEEES CS
  Glyco_hydro_32N 217 qdyyfigkfdaekkkftad....eeelkelDyGkdfYAsqtfededk.rriligWmgewdseeadvpekgwagalslpReltlk 295
                       ++++ g++  ++++ ++      +   +lD+G   Y+ +tf d+ k ++i++gW+ e d  ++ v +++w+g++slpRel+l 
       KKY22152.1 198 SQQWMSGDLVVSETRGSKTvemkYRIGGRLDHGC-LYGVNTFWDPVKsQQIAWGWIREEDLPQHLVDRQNWSGLMSLPRELRLL 280
                      9999999976555554444556688889******.*********9999*************988888**************984 PP

>> DUF4975  Domain of unknown function (DUF4975)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.6e-07    0.0016     115     159 ..     441     485 ..     315     492 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.6e-07
     DUF4975 115 vafekpaDnvykvkiytdnsvcvvYindkvaftnRiydlqknpWs 159
                  a e+p+ + y vk+  d+sv+ v++n+++  + Riy  +k  W 
  KKY22152.1 441 NAPEEPTIESYDVKMWLDESVLEVFVNGRTVISTRIYPGRKRIWG 485
                 556789999*********************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.53
# Mc/sec: 3259.44
//
Query:       KKY22153.1  [L=349]
Description: putative stomatin family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-28   99.2   1.5    5.1e-28   98.3   1.5    1.3  1  Band_7    SPFH domain / Band 7 family
  ------ inclusion threshold ------
      0.023   13.8   1.5      0.032   13.3   1.5    1.2  1  Dak1_2    Dihydroxyacetone kinase family
       0.11   12.2   0.1       0.19   11.4   0.1    1.4  1  Band_7_1  SPFH domain-Band 7 family


Domain annotation for each model (and alignments):
>> Band_7  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   1.5   8.6e-32   5.1e-28       3     177 ..      88     256 ..      87     259 .. 0.98

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 8.6e-32
      Band_7   3 ieegevgvvvrfGklsrvlepGlhfilPfgrsvtvvsvrvqtldvsvsltvptkDglpvtidvtviyrvpddapklvaaveresanldnlirrvlesal 101
                 +++g+vg+++ fGk +r ++pGl  ++P+ +++++v+v++q ++v++ + ++tkD++ ++++++++y++ + + k+++ +     n+++ + + ++ +l
  KKY22153.1  88 VSQGNVGLITKFGKFYRAVDPGLVKVNPLSEKLIQVDVKIQIVEVPR-QVCMTKDNVTLNLTSVIYYHI-TSPHKAAFGI----SNIRQALVERTQTTL 180
                 789********************************************.*********************.**********....*************** PP

      Band_7 102 revisemtleellsnreelaeelknelneqlrkyGvevldvritdidpppevaqalaakqaaeaeaqaeiaraeae 177
                 r+v++ + l+++++ ree+a+ +++ + + ++++Gv+v++  i+di ++++++++l +++++ +  + ++  a+ae
  KKY22153.1 181 RHVVGARVLQDVIERREEIAQSIGEIIEDVASGWGVQVESMLIKDIIFSNDLQDSLSMAAQSKRIGESKVIAARAE 256
                 **************************************************************99998888888887 PP

>> Dak1_2  Dihydroxyacetone kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.5   5.4e-06     0.032      84     166 ..     235     315 ..     197     319 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.4e-06
      Dak1_2  84 tdseadepkeekeeavvavaageglaelfkslgvdevieggqtmnPstedllkaiekvnakevivLpnnkniilaaeqaaela 166
                 + s a+++k+  e++v+a +a+ + a+l+++     ++++ ++m+    + ++a+ k+  ++vi Lp   ++++a  +aa+ a
  KKY22153.1 235 SLSMAAQSKRIGESKVIAARAEVESAKLMRQAA--DILSSAPAMQIRYLEAMQAMAKTANSKVIFLPATNQTVQAQMAAADSA 315
                 33445555666688***************9877..8*******************************9999999988887655 PP

>> Band_7_1  SPFH domain-Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   3.1e-05      0.19     128     208 ..     163     241 ..     149     244 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.1e-05
    Band_7_1 128 fdteeiseqlkslivtrlsdvlaeskipvldlaakseelaeklkealkeelaeyGlelekleienislpeevekaldkras 208
                 f  ++i + l +  +t+l +v++     + d+  + ee+a+ + e +++  +  G+++e++ i++i + ++++  l+ +a+
  KKY22153.1 163 FGISNIRQALVERTQTTLRHVVGARV--LQDVIERREEIAQSIGEIIEDVASGWGVQVESMLIKDIIFSNDLQDSLSMAAQ 241
                 55666677777777777777776554..46889999************************************999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2327.34
//
Query:       KKY22154.1  [L=256]
Description: putative 40s ribosomal protein s10b [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-42  141.7   0.1    9.4e-42  141.0   0.1    1.3  1  S10_plectin  Plectin/S10 domain


Domain annotation for each model (and alignments):
>> S10_plectin  Plectin/S10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.0   0.1   5.3e-46   9.4e-42       1      92 [.     100     191 ..     100     192 .. 0.98

  Alignments for each domain:
  == domain 1  score: 141.0 bits;  conditional E-value: 5.3e-46
                  --HCHHHHHHHHCCCCSCEEEE--SS----SSS---HHHHHHHHHHCCCCTSEEEEEETTEEEEEE-HHHHHHHHHHHXXXXSXHHHHHXXX CS
  S10_plectin   1 ipkknrkaiyeylfkegvlvakkdfelkkheelnvpnlqvikalqSLksrgyvkeqfaWrhyYytLtneGieylreylhlpeeivPatlkks 92 
                  ipk++rk+i+eylf+egvlvakkdf+l+kh +++ +nl+vika+qSL+srgy+k+qf+W++yYytLt eG++ylre+lhlp+eivPat+ k+
   KKY22154.1 100 IPKADRKKIHEYLFREGVLVAKKDFNLPKHADIDTKNLYVIKACQSLTSRGYLKTQFSWQYYYYTLTPEGLDYLREWLHLPAEIVPATHIKQ 191
                  89***************************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.48
# Mc/sec: 1608.71
//
Query:       KKY22155.1  [L=195]
Description: hypothetical protein UCRPC4_g03342 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-24   84.5   7.4      7e-24   84.5   7.4    1.7  2  Sde2_N_Ubi  Silencing defective 2 N-terminal ubiquitin domain
     0.0093   15.9   0.9      0.013   15.4   0.9    1.2  1  VIT1        VIT family


Domain annotation for each model (and alignments):
>> Sde2_N_Ubi  Silencing defective 2 N-terminal ubiquitin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   7.4   7.8e-28     7e-24     103     164 .]       1      64 [.       1      64 [. 0.98
   2 ?   -2.3   0.4      0.38   3.4e+03     134     154 ..      80     100 ..      75     103 .. 0.79

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 7.8e-28
  Sde2_N_Ubi 103 msskkksn..enndscRdldGrRLrtvkeakalaeylaekperekkekearrkrleavveaaek 164
                 mss+kk+n  e+n+s+R+ldGrRLrt++eak+laeyla+kpe+e+++ke+r+kr++av++aaek
  KKY22155.1   1 MSSRKKRNagEQNGSNRNLDGRRLRTITEAKNLAEYLATKPEMERRDKEQRKKRWQAVIDAAEK 64 
                 9***********************************************************9996 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.38
  Sde2_N_Ubi 134 aeylaekperekkekearrkr 154
                 +e+++ + +   +++ea r+ 
  KKY22155.1  80 EEWMEDREDAAERAREAVRRA 100
                 688888888888889888875 PP

>> VIT1  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.9   1.4e-06     0.013      51     120 ..      34     103 ..      32     142 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-06
        VIT1  51 GeYlsvkserdlekaerkreeeeleedpeegeaeelaeilearglseelaqevaaellknpdallelmlr 120
                  eYl++k e +  ++e+++++++   d +e+ +eel++  + +glsee  ++  +   ++++a++++m+ 
  KKY22155.1  34 AEYLATKPEMERRDKEQRKKRWQAVIDAAEKREEELKRGARGKGLSEEWMEDREDAAERAREAVRRAMAS 103
                 69********************99888874445*****************99888888888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1337  (0.0745719); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.31s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1276.16
//
Query:       KKY22156.1  [L=290]
Description: putative 40s ribosomal protein s0 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-26   92.7   0.0    8.3e-15   54.6   0.0    2.1  2  Ribosomal_S2  Ribosomal protein S2
    1.4e-07   32.8   9.7    2.5e-07   32.0   9.7    1.4  1  40S_SA_C      40S ribosomal protein SA C-terminus


Domain annotation for each model (and alignments):
>> Ribosomal_S2  Ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   2.2e-13     2e-09       1      97 [.      20     114 ..      20     119 .. 0.92
   2 !   54.6   0.0   9.3e-19   8.3e-15     145     212 ..     117     184 ..     113     186 .. 0.93

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 2.2e-13
  Ribosomal_S2   1 LLeagvhfGhqtrrwnpkmkpyIyger.ngihiidlektlaalrraykvvkevaakggkilfvgtkkqakeavkeaakrangyyvnerWlgGtLTNf 96 
                   LL+a++h+G   ++ + +m+py+ ++r +gi +i++ kt +++  a++++  ++ + + +  ++ +   ++av + a+ +++  +  r+++G +TN 
    KKY22156.1  20 LLAAQCHLGS--KNLQVHMEPYLWKTRpDGINVINIGKTWEKIVLAARIIA-AVDNPSDVCVISARPYGQRAVLKFAAHTGAQAIAGRFTPGNFTNH 113
                   89*******5..667899******999679*******************98.578999**************************************6 PP

  Ribosomal_S2  97 k 97 
                    
    KKY22156.1 114 I 114
                   4 PP

  == domain 2  score: 54.6 bits;  conditional E-value: 9.3e-19
  Ribosomal_S2 145 mkklPdlvvvldpkkekiavkEakklgipviaivDtnvdpdlvdypIpaNddsirsiklilgvladai 212
                     + P l+vv+dp+ +  a+kEa+ ++ipvia++Dt++ ++ vd +Ip N++   +i l+  +la+ +
    KKY22156.1 117 SFREPRLLVVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLVWWLLAREV 184
                   5678*********************************************************9999977 PP

>> 40S_SA_C  40S ribosomal protein SA C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   9.7   2.8e-11   2.5e-07       1      94 [.     205     290 .]     205     290 .] 0.71

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 2.8e-11
    40S_SA_C   1 fFYRdPEeiekeeqaaaekalvkkeeqeewtapv..eftepevadWaeegvavpsvpaaaaaaaaevkaaedwsaqpatedWsaaptaaae.atseW 94 
                 +FYRdPE++e++e  a+e+++ +++e    + p+  ++   ++adW+++g+  ++v +  aa     +  + w+a+   ++W+a+ ++aa+ a  +W
  KKY22156.1 205 YFYRDPEAEENKEV-AEEAKVPGADE----VGPAaiDTGFTNSADWEVTGAGPGAVYQGEAAP----AGDSTWNADG--AEWAAEGAPAAApAGDKW 290
                 9************8.56666677777....56663444444889***9999777777666555....6678899998..9***94444444265666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1898.17
//
Query:       KKY22157.1  [L=343]
Description: putative ribosomal protein s15 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-25   87.7   1.6    5.7e-24   84.1   1.5    2.4  2  Ribosomal_S15  Ribosomal protein S15


Domain annotation for each model (and alignments):
>> Ribosomal_S15  Ribosomal protein S15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.035   6.3e+02       3      16 ..     224     237 ..     222     241 .. 0.80
   2 !   84.1   1.5   3.2e-28   5.7e-24      13      80 ..     262     332 ..     256     333 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.035
                    HHHHHHSSSTT-TS CS
  Ribosomal_S15   3 elikefqrhekDtG 16 
                    + i+ef+rh++D  
     KKY22157.1 224 RCIEEFGRHNTDET 237
                    459*******9975 PP

  == domain 2  score: 84.1 bits;  conditional E-value: 3.2e-28
                    T-TSSHHHHHHHHHHHHHHHHHHHHC.TTT-HHHHHHHHHHHHHHHHHHHHHHHH-H..HHHHHHHHHCTS CS
  Ribosomal_S15  13 kDtGspevqiallterInnltehlke.nkkDkhsrrgLlklvskRrkllkYLkrkdv..erYkklieklgl 80 
                     DtGs+evqia+lt +I++l +h+++  +kDkh++r+L+ lv++R+kll YL++k++  +r+ +l+eklgl
     KKY22157.1 262 RDTGSSEVQIAILTTKIEKLANHVEKvGHKDKHNKRNLRVLVHRRQKLLSYLRKKERggPRWANLMEKLGL 332
                    6***********************99567*****************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.52
# Mc/sec: 2000.12
//
Query:       KKY22158.1  [L=585]
Description: putative pseudouridylate synthase 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-33  113.7   0.0    3.6e-32  111.0   0.0    2.2  2  PseudoU_synth_1  tRNA pseudouridine synthase


Domain annotation for each model (and alignments):
>> PseudoU_synth_1  tRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0     0.084   1.5e+03      49      68 ..     141     161 ..      72     195 .. 0.61
   2 !  111.0   0.0     2e-36   3.6e-32       1     108 []     300     444 ..     300     444 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.084
  PseudoU_synth_1  49 kgsgFldhqVRamvgvl.fav 68 
                      +  g++d++V a ++v+ + v
       KKY22158.1 141 SKCGRTDRGVSAFGQVIgIRV 161
                      455889999999998886666 PP

  == domain 2  score: 111.0 bits;  conditional E-value: 2e-36
  PseudoU_synth_1   1 AakelvGthdfgsfckqkqek..kntvrtileaaieevsgeekell..................................vvtvkgsgFldhqV 58 
                      A+ ++vG hdf++fck++++k  +n++r++l+a i  vs+ ++++                                   +++v+g +Fl+hq+
       KKY22158.1 300 ACSYFVGLHDFRNFCKIDESKqmPNCERRVLHAVINDVSQSDGPHFvgktpelapnpgvsnvpfatgdgsqaiangpkvyCFEVHGTAFLWHQI 393
                      899******************999******************9999************************************************ PP

  PseudoU_synth_1  59 Ramvgvlfavgqgklspedvkellnakk.rkkiavetapavglvlfhvrYd 108
                      R+mv++lf++gqg ++p+ vkell++++ + ++++e+a++++lvl++++++
       KKY22158.1 394 RCMVAILFLIGQGLEKPSLVKELLDIQRtPGRPMYEMASDAPLVLWDCIFP 444
                      ***************************99*********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 3619.08
//
Query:       KKY22159.1  [L=354]
Description: putative extracellular dioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-07   28.5   0.0    1.8e-06   27.5   0.0    1.5  1  Dioxygenase_C  Dioxygenase


Domain annotation for each model (and alignments):
>> Dioxygenase_C  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0     1e-10   1.8e-06       3     100 ..     132     233 ..     130     276 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1e-10
                    -S--EET--EEESEEE---S--TT--EEEEEEEEE-T.TSSB-TT-EEEEE---TTS--TTS-TTS-SS.....TTTTE...EEEE--TTSEEEEE CS
  Dioxygenase_C   3 gPlyveeapededlarledkgeeegerlvlsGrvlde.aGkplagalvelWhanaeGrYshkkeeheap.....elnlr...griltdeeGryrir 89 
                    gP+yv +  +       +  +   g++l++  +++d+   +p+++  ++ Wh na+G Ys   e+ + +     ++n +   g   +d++G  ++ 
     KKY22159.1 132 GPYYVSGELIR-----RNITEGIGGVPLTIDIQLVDTsTCEPVPNIYLDFWHCNATGVYSGIVESGNGNsgdsaNINSTflrGIQESDSDGVVQFD 222
                    67777633222.....2222334699*******9997257*******************9877654322122014443344356669********* PP

                    EE----EE--T CS
  Dioxygenase_C  90 tikPapYpipn 100
                    +i P+ Y  ++
     KKY22159.1 223 SIMPGHYLSRT 233
                    *******8877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2385.00
//
Query:       KKY22160.1  [L=345]
Description: putative alcohol dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-25   89.0   0.8    2.4e-25   89.0   0.8    1.6  2  ADH_zinc_N    Zinc-binding dehydrogenase
    1.5e-14   55.2   0.0    4.3e-14   53.7   0.0    1.7  2  ADH_zinc_N_2  Zinc-binding dehydrogenase
    1.2e-10   41.2   0.1    4.8e-09   36.1   0.0    2.7  2  ADH_N         Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
      0.039   14.2   0.0      0.063   13.5   0.0    1.3  1  TrkA_N        TrkA-N domain


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.9   8.7e+03      82      91 ..      72      82 ..      70     103 .. 0.65
   2 !   89.0   0.8   5.4e-29   2.4e-25       1     128 [.     177     305 ..     177     307 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.9
                EEEEEECSC.T CS
  ADH_zinc_N 82 gGrlvvvGg.g 91
                 G++v vG  +
  KKY22160.1 72 AGTVVSVGSrV 82
                48999999652 PP

  == domain 2  score: 89.0 bits;  conditional E-value: 5.4e-29
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHT.TTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC..TSSEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykea.dlverikelt.ggegvdvvfecvGsgatleaalkllkpgGrlvvvGg..gkgee 95 
                 gv ++a+q+A a+Ga+via+ ss+ek++++  lGa++vinyk++ ++    +++t ggegv+ v+e+ G ++++++++k++k +G+++v+G+  g ++ 
  KKY22160.1 177 GVSIFAIQFAVAAGATVIATTSSDEKAQKLTALGAKHVINYKTDsEWGTTAAKITpGGEGVHHVVEVGG-PESMRQSFKAVKIDGTITVIGFlgGVKGG 274
                 899**************************************99999*********66************.*********************97522222 PP

                 EEEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHH CS
  ADH_zinc_N  96 efdlrnlllkeksilGsllgslreefkealdll 128
                   ++   l +  si+G+l+gs r++f+++++ +
  KKY22160.1 275 -PSPLEALNNICSIRGVLVGS-RQQFQDMNHAI 305
                 .34444678999*********.9***9998765 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.7   7.5e+03      45      56 ..      71      82 ..      61     113 .. 0.66
   2 !   53.7   0.0   9.5e-18   4.3e-14       1     133 []     209     342 ..     209     342 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.7
                  EEEEEEE----. CS
  ADH_zinc_N_2 45 ggGrlvsiggpp 56
                  g G++vs+g+++
    KKY22160.1 71 GAGTVVSVGSRV 82
                  669999999655 PP

  == domain 2  score: 53.7 bits;  conditional E-value: 9.5e-18
                   TT-SEEEETT.STTHH.....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHH CS
  ADH_zinc_N_2   1 lGAdevidyr.tedfe.....aatggegvDvvldtvggealleaslkvlpggGrlvsig.gpplsaallkpakkrkgrsvkyeflfsmkasaqadil 90 
                   lGA++vi+y+ + ++         ggegv +v++  g e++ ++s+k+++  G++ +ig    ++ + +++++ +     ++  ++    s +++ +
    KKY22160.1 209 LGAKHVINYKtDSEWGttaakITPGGEGVHHVVEVGGPESM-RQSFKAVKIDGTITVIGfLGGVKGGPSPLEALN--NICSIRGVL--VGS-RQQ-F 298
                   8*********77777799975333569*******7555655.*******777***99995433444444444433..333333333..345.788.* PP

                   HHHHHHHHHHH----EE.EEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  91 eelaalieeGklrpvvd.rvfpleeaaeAhrylesgrarGKiVl 133
                   +++ + ie++ ++pvvd  vf+++++ +A++y    +++GK+V+
    KKY22160.1 299 QDMNHAIEANDINPVVDpNVFGFDKVLDAYQYQWDQKHFGKVVV 342
                   *****************555***********************8 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   1.1e-12   4.8e-09       2      65 ..      34      97 ..      33     135 .. 0.79
   2 ?    2.0   0.1     0.043   1.9e+02      24      48 ..     221     245 ..     206     296 .. 0.76

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 1.1e-12
                TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEE CS
       ADH_N  2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepli 65
                ++ l+++ka++++  Dl i kg+  ++ +lp+i+  + +G+v++vg++v+++k Gd+V+  +++
  KKY22160.1 34 HDCLVEIKAVSLNYRDLIIPKGKYPFPLALPVIPASDGAGTVVSVGSRVSEFKPGDKVCTLFNQ 97
                7899******************************************************985544 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.043
                 STTTTSSSSEE---EEEEEEEEEST CS
       ADH_N  24 gkelevklplilGHEivGeveevgp 48 
                 +++ ++++ +++G E v  v+evg 
  KKY22160.1 221 SEWGTTAAKITPGGEGVHHVVEVGG 245
                 3677889999************994 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.4e-05     0.063      75     115 ..     178     216 ..     169     217 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHHTSSSEEEEEESSGGGHHHHHHHTTSEEEE CS
      TrkA_N  75 anilavllakelnpkkkiiaraqdpehaellkklgadvvis 115
                 ++i+a++ a     ++++ia ++++e+a++l  lga +vi+
  KKY22160.1 178 VSIFAIQFAVA--AGATVIATTSSDEKAQKLTALGAKHVIN 216
                 67888888854..4589**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.32s 00:00:00.84 Elapsed: 00:00:00.51
# Mc/sec: 2043.39
//
Query:       KKY22161.1  [L=2186]
Description: hypothetical protein UCRPC4_g03348 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-74  250.9  10.6    4.6e-74  250.4  10.6    1.2  1  Mus7      Mus7/MMS22 family
  ------ inclusion threshold ------
      0.079   13.3   0.0       0.24   11.7   0.0    1.9  1  DUF4074   Domain of unknown function (DUF4074)


Domain annotation for each model (and alignments):
>> Mus7  Mus7/MMS22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.4  10.6   5.1e-78   4.6e-74       2     612 ..    1171    1788 ..    1170    1790 .. 0.89

  Alignments for each domain:
  == domain 1  score: 250.4 bits;  conditional E-value: 5.1e-78
        Mus7    2 EslWqklftllplsevdangitqagar...lkenWslvkrllsrvlersdenkemaasrnrYvrillqrcyfLvsewgWrdaekilltlydfFksrk 95  
                  E+ W++lf  +   +  +ng+ +  +    ++ nW+ vk l +++   s   ++       Y r  +qrc +L ++++W   e i++tlyd F +  
  KKY22161.1 1171 EIRWKTLFVVSTTIQFTTNGQIRQSPIpdqKRTNWAEVKELFRQAHTLSAGASSHIRTPPFYTRSAFQRCLVLAQRYRWDAHEIIIDTLYDLFRRSG 1267
                  899*****************9998887899***********999988887766655577789999******************************** PP

        Mus7   96 ladLeeEeeykspafleeLdrapsldieaeddcFhiFlklLalaiqeLrel.....eskkkikrlvsRllPvhkrqytkedpitqsdlaaLrNhhdL 187 
                  l + ++Ee y+ pafl++L  + ++   +ed +Fh  +kl+a+ ++ + ++     ++k+++k+l+ Rl P+      k d + +++l  L Nh+dL
  KKY22161.1 1268 LHN-PTEEHYEYPAFLDNLTPQTVFYPSSEDGSFHSMIKLIAITLKDMAQRshtdpSQKRQMKNLLFRLVPNNGQVSSKYDEVAEHSLTPLKNHYDL 1363
                  *99.7777****************************************888889999**************************************** PP

        Mus7  188 lllLlwavptslrprleeikslvapkdshkeaclisirawgqlarvkistkedrsllepvvkwfnnvisellkeyelaeseieaaiemwksfshala 284 
                  l +L+wa+pt  rprl++ ++lv+++ sh +ac +s+++w++l++++i++ e  s+l p++ ++ +++++++ ++  +++e+ a+   w+    +  
  KKY22161.1 1364 LTVLYWAAPTQFRPRLQRFEDLVDFSGSHLSACRVSLQTWKRLVYFQITALEPLSSLIPFAVMLDSMMKAMVHQHRDVANEVYAQRAGWS---DEHV 1457
                  *******************************************************************************99997777666...7888 PP

        Mus7  285 eqlaeknkrtveslLkvalrslqdviqtsktleaanlllskaqlkqilellksleprvnqealkviqtfl...........lqpaltteeq...... 364 
                    ++++nk ++e+ L  +l+ l d+i+  ++ e+a+ l+s  ++  il l+ s++++ ++  l++   +            +        +      
  KKY22161.1 1458 TSIIKYNKCQLERFLLELLEILTDIIKVCQQDEQAITLVSRESISSILCLFPSRSTQCDKLFLQTFSLVTafaernvlslgK--------Skgitds 1546
                  99*********************************************************77666665555555666666642........2334444 PP

        Mus7  365 ...qqkqedddarDeeslddiallleeedtkefvelvrsllspalkqllsnilgedrctEkavleavvdcwakiaqvLvknglrevwssqyskfgle 458 
                     + +++ +d+++++++    +l++e + ++  e+v+s + p+l++l+   +g d+++  a +e ++  w +i+q+L ++gl    +  +s    e
  KKY22161.1 1547 qavAVQNTAEDSQEYGDWSHLDALIDEPQ-SRALEYVNSAFFPSLFRLVCDAIGADEAPAPANMEDLLLSWSSIIQILSTHGLHYAGN-FLSSQHHE 1641
                  445777899***************98776.5678************************************************996444.599***** PP

        Mus7  459 swkrirnttkrrkflllFlakllekdaaavq.eieeevlsvwlqslvkrvsslkdeh....sltevlkkvkrkdptLknlpflaketisislatgen 550 
                  sw  +rnt ++  + ++F + l+ek ++++  e +  +l + ++ l+++ ++    h    +lte++ k  +++p+++          ++ l+++  
  KKY22161.1 1642 SWDWLRNTDQKHCYRPFFVSCLVEKLSITFYeENRSAILDTYIKMLAEPRRF----HtwlpRLTEAICK--KNEPIMQ------TS-SNLILQYL-- 1723
                  ************************999887669*******************....33567******99..5556665......33.44445555.. PP

        Mus7  551 qrlsllsdalanlr..rslsldkdeftellqallrsmksvyeklla.skttshgtyvdfvsrlvs 612 
                      +l  ++ n+r  ++++++ +  ++l+ +llr+mk++y++l   +  + + +yv+fv+ ++ 
  KKY22161.1 1724 NPKRILAIIMINMRisQKSRQNPAMSRDLMVTLLRTMKENYKELDRgNDYNLRDEYVAFVHGVLD 1788
                  455567778888887788999999999***************9876244467889******9986 PP

>> DUF4074  Domain of unknown function (DUF4074)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.7e-05      0.24       7      52 ..     465     510 ..     459     522 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.7e-05
     DUF4074   7 ygLnHLphhqsasmDYngaaqmpasqhhGpCdphptYtdLsahhts 52 
                   L HL   +s+ mD  g aq     +  p + h+tY +L +   s
  KKY22161.1 465 ARLDHLRTSPSKTMDAKGVAQKVRRSRANPIEFHQTYSELLSDDLS 510
                 5699************************************987755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.09u 0.37s 00:00:01.46 Elapsed: 00:00:00.56
# Mc/sec: 11778.23
//
Query:       KKY22162.1  [L=161]
Description: putative short-chain dehydrogenase reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-09   38.0   0.0    1.6e-09   37.5   0.0    1.2  1  adh_short     short chain dehydrogenase
    4.1e-06   26.5   0.0    5.3e-06   26.2   0.0    1.1  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   1.8e-13   1.6e-09     129     188 ..      49     115 ..      37     120 .. 0.87

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1.8e-13
                 EEEEEEEEGGGTSB-T.....TBHHHHHHHHHHHHHHHHHHHHHGGGT..EEEEEEEESSBSSHHHH CS
   adh_short 129 GrIvnvsSvagkvpva.....gvaaYsAsKaavagltrslakelaptg..irvnavaPGlvdTdmak 188
                 G+Iv++sS  g  +++     g+ aY+AsKaa++++ r +a el++++    + a++PG v+Tdma+
  KKY22162.1  49 GTIVFMSSDSGSAANFrdfedGFGAYAASKAALNQMLRHMAAELKRKEseTIILAMHPGEVATDMAN 115
                 99*********887653333379**********************999888899***********85 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   5.9e-10   5.3e-06     116     180 ..      41     115 ..      31     127 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 5.9e-10
                   HCTSC...CEEEEEEEGGGTSB.....STTTTHHHHHHHHHHHHHHHHHHHHGG..GTEEEEEEEE--BHCTGGG CS
  adh_short_C2 116 lmkeg...gsivnlssvgaerv.....vpnynaygaaKaalealtrylAvelgp..kgiRvNavspgpikTlaas 180
                   +++ g   g iv +ss +++ +      ++  ay+a+Kaal+++ r +A+el +   +  + a +pg ++T++a+
    KKY22162.1  41 ILATGipiGTIVFMSSDSGSAAnfrdfEDGFGAYAASKAALNQMLRHMAAELKRkeSETIILAMHPGEVATDMAN 115
                   5566667799******9888774322234556********************99334566888999999999974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1017.06
//
Query:       KKY22163.1  [L=537]
Description: hypothetical protein UCRPC4_g03350 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
        7.2    7.4   6.5       0.95   10.2   0.8    2.5  3  RecG_N        RecG N-terminal helical domain
        8.4    6.4   8.9         20    5.2   0.1    3.4  3  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C


Domain annotation for each model (and alignments):
>> RecG_N  RecG N-terminal helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       0.9   8.1e+03       5      23 ..     150     168 ..     148     179 .. 0.78
   2 ?   10.2   0.8   0.00011      0.95       3      53 ..     355     404 ..     353     410 .. 0.94
   3 ?   -2.9   0.2       1.3   1.2e+04       7      39 ..     427     459 ..     425     468 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.9
                 HHHHHHHHHTS---TTT.. CS
      RecG_N   5 FLeelekllkkvlsgklet 23 
                 F++ l ++++++ ++k +t
  KKY22163.1 150 FFNFLRNKIDSMTKTKSST 168
                 8999999999998888863 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHTS---TTT........HHHHHHH---GGGG-HHHH.HHHH CS
      RecG_N   3 EeFLeelekllkkvlsgkleteelieeikkkleliddplleneevlkekls 53 
                  +FL+ le+++++ l ++     l+e i +++ ++++ ++ +++ + e+l+
  KKY22163.1 355 NDFLNVLEESINNELTHSTALFALFESIDRQFLNLQRTVVRESDTQ-ERLE 404
                 69*****************************************999.9986 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.3
                 HHHHHHHTS---TTT........HHHHHHH--- CS
      RecG_N   7 eelekllkkvlsgkleteelieeikkklelidd 39 
                 e+  +ll +v    +  ++li e +++l+ ++ 
  KKY22163.1 427 EKNKQLLASVRARTVANKHLIMEHHNRLQTLKV 459
                 555667777777777777777777777776654 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1    0.0023        20      26      82 ..     239     295 ..     227     324 .. 0.67
   2 ?    4.5   0.4    0.0036        33      47      89 ..     330     371 ..     320     393 .. 0.72
   3 ?   -0.3   0.5      0.11     1e+03      56      92 ..     431     466 ..     403     497 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0023
  Baculo_PEP_C  26 rlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdt 82 
                   r+ n++ +  + + ld++ + L++l  +l++  a++d+++d+ l  ++ a  +l++ 
    KKY22163.1 239 RTANMTSAPIIVRSLDDLSECLKTLGLELNKFFADVDSDVDSILLVMDWAKRELAQV 295
                   555666655667777777777778887888877877777777766666555555533 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0036
  Baculo_PEP_C  47 LnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtn 89 
                   +++l +d+   ++  ++  ++l+ + +d ln l+++++neLt 
    KKY22163.1 330 FGKLVSDVFGPSS-TQRTRNALTRTFNDFLNVLEESINNELTH 371
                   5555555555333.33445778888999999999999999996 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.11
  Baculo_PEP_C  56 sllaeldtrldtlltnLtdalnalqdtlrneLtnlns 92 
                   +lla++++r  ++ + + +  n+lq tl+  L++l  
    KKY22163.1 431 QLLASVRARTVANKHLIMEHHNRLQ-TLKVSLETLRR 466
                   3444444444444444444444443.33333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       942  (0.0525406); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.48
# Mc/sec: 3357.11
//
Query:       KKY22164.1  [L=111]
Description: putative cytochrome c [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-09   38.2   0.0    3.3e-09   37.8   0.0    1.2  1  Cytochrom_C      Cytochrome c
      6e-07   29.7   2.1    3.5e-06   27.2   2.1    1.9  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
    0.00076   19.2   1.0     0.0081   15.9   1.0    2.2  1  Cytochrom_C550   Cytochrome c-550 domain


Domain annotation for each model (and alignments):
>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   5.5e-13   3.3e-09       1      90 [.      11     108 ..      11     110 .. 0.82

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 5.5e-13
                  X--HHHHHHTTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--S..........SSHHHHHHHGGGGGGG.TT--H.HHHHHHHHH CS
  Cytochrom_C   1 aarGkelftanCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsap..........rddfekkkltaemparkerlte.qeiadlaaY 87 
                  a++G+ lf++ Ca+CH +++ + ++  gp+l g+  r+s++ +g  +++ ++++              +++k+ ++++m     +l+  ++++dl+ +
   KKY22164.1  11 AKKGAGLFKTRCAQCHNLDASEGNKI-GPNLHGLFGRKSGQVEGYAYTDANKQKGVewnegslfdyLENPKKYIPGTKMAFG--GLKKaKDRNDLITF 105
                  689*****99******9987655444.6********************9998888877888888777777777777777654..565549******** PP

                  HHT CS
  Cytochrom_C  88 Lks 90 
                  L+ 
   KKY22164.1 106 LRE 108
                  986 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   2.1   5.8e-10   3.5e-06       2      67 .]      10     106 ..       9     106 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 5.8e-10
  Cytochrome_CBB3   2 aaaaGaalykknCasCHg....kggag.........................psla.grdwepdalvdiiknGkgaMp....afggqlsdeelw 61 
                      +a++Ga l+k  Ca+CH     +   g                         +++  g +w++  l+d+++n k+  p    afgg  ++++++
       KKY22164.1  10 DAKKGAGLFKTRCAQCHNldasE---GnkigpnlhglfgrksgqvegyaytdANKQkGVEWNEGSLFDYLENPKKYIPgtkmAFGGLKKAKDRN 100
                      789**************975531...24456666666666666666666655333335588889999999999987776666999999999**9 PP

  Cytochrome_CBB3  62 alvaYl 67 
                      +l+++l
       KKY22164.1 101 DLITFL 106
                      999997 PP

>> Cytochrom_C550  Cytochrome c-550 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.0   1.4e-06    0.0081      20      46 ..       5      31 ..       2     107 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-06
                    EEEHHHHHHHHHHHHHHTHHHHGGGSB CS
  Cytochrom_C550 20 tlseeqlkkgkklFeaeCaqCHvgGkt 46
                     +s+ ++kkg  lF++ CaqCH   + 
      KKY22164.1  5 SFSDGDAKKGAGLFKTRCAQCHNLDAS 31
                    69999*****************86554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 721.36
//
Query:       KKY22165.1  [L=76]
Description: hypothetical protein UCRPC4_g03352 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-06   26.3   0.0    6.6e-06   25.8   0.0    1.3  1  B12D      NADH-ubiquinone reductase complex 1 MLRQ subunit
    0.00062   19.2   0.0     0.0007   19.0   0.0    1.0  1  ThrE      Putative threonine/serine exporter
  ------ inclusion threshold ------
      0.032   14.2   0.0      0.039   13.9   0.0    1.1  1  ApoO      Apolipoprotein O


Domain annotation for each model (and alignments):
>> B12D  NADH-ubiquinone reductase complex 1 MLRQ subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.1e-09   6.6e-06       3      30 ..      27      54 ..      25      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.1e-09
        B12D  3 peliPLfvfigagvggavfylvRllltn 30
                peliPLfv ++++v+ a f ++R l+++
  KKY22165.1 27 PELIPLFVVVAFAVFAACFAMARKLTSD 54
                9************************876 PP

>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.2e-07    0.0007      84     124 ..       7      47 ..       2      55 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.2e-07
        ThrE  84 ageisleeaeerLdeIerskpryprwlvvlaaglaaaafal 124
                 ++e s++ +++rL+++++++p+  +++vv+a++++aa+fa+
  KKY22165.1   7 KEEHSAHTISQRLRTLKKMPPELIPLFVVVAFAVFAACFAM 47 
                 6788999********************************98 PP

>> ApoO  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.6e-06     0.039      44      84 ..       7      47 ..       4      57 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.6e-06
        ApoO 44 kvetaeqsvtdtiasLkeppedllPrlgyilvagLaGsila 84
                k e++ +++++ + +Lk+ p++l+P ++++++a+ a  +  
  KKY22165.1  7 KEEHSAHTISQRLRTLKKMPPELIPLFVVVAFAVFAACFAM 47
                557889999**************************988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 551.80
//
Query:       KKY22166.1  [L=153]
Description: putative peptidyl prolyl cis-trans isomerase cyclophilin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-17   62.8   0.0    2.7e-17   62.3   0.0    1.2  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
    0.00027   21.0   0.0    0.00038   20.5   0.0    1.2  1  RRM_7     RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0     3e-21   2.7e-17       1      70 []      11      84 ..      11      84 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 3e-21
                EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE....TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1  1 lfVgnLppdvteeeLkelFskfGpiksiklvrd....etgkskgfafVeFeskedAekAlealngkklggrelk 70
                ++Vg+L + vte++L+e F +fG+i +i+l++     + ++++gf++VeFe  +dA++A+++++  +l gr +k
  KKY22166.1 11 VYVGGLDQAVTERTLSEAFIPFGDIAEISLPKPeapsSADRHRGFGYVEFEEASDAKEAIDNMDQSELYGRIIK 84
                8*******************************9999999*******************************9885 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   4.2e-08   0.00038       3      74 ..      10      77 ..       8      95 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4.2e-08
       RRM_7  3 kvFvGGlPiDiteeelkatfkefgkvl.vdwPkkaeskkkaaenskaakgyvflvfedeksvkaLleacteee 74
                 v+vGGl   +te+ l+++f  fg+++ +  Pk  e +++a      ++g+ ++ fe+ +  k+ +++  + e
  KKY22166.1 10 TVYVGGLDQAVTERTLSEAFIPFGDIAeISLPKP-EAPSSAD----RHRGFGYVEFEEASDAKEAIDNMDQSE 77
                59**********************9753899975.4444433....3579********999999999876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1146.81
//
Query:       KKY22167.1  [L=1282]
Description: putative protein transporter sec31 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-09   36.3   0.1    4.5e-09   36.3   0.1    3.9  4  SRA1         Steroid receptor RNA activator (SRA1)
    0.00046   19.9   0.1     0.0031   17.2   0.1    2.1  1  Sec16_C      Sec23-binding domain of Sec16
    0.00077   20.2   8.8       0.29   12.1   0.1    5.7  6  WD40         WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.042   14.4   0.0       0.11   13.2   0.0    1.7  1  Sec16        Vesicle coat trafficking protein Sec16 mid-regio
       0.17   12.2   0.1        1.8    8.9   0.0    2.6  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> SRA1  Steroid receptor RNA activator (SRA1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   1.0       1.3   4.5e+03       2      23 ..     898     921 ..     897     932 .. 0.71
   2 ?  -14.0  13.0         5   1.8e+04       4      23 ..     954     973 ..     951    1014 .. 0.61
   3 ?   -3.2   2.5       1.8   6.5e+03       3      30 ..    1088    1114 ..    1076    1129 .. 0.59
   4 !   36.3   0.1   1.2e-12   4.5e-09      12     132 ..    1144    1278 ..    1127    1281 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.3
        SRA1   2 gppPssvaapp..pPsveavklss 23 
                 +ppP+s +++p  pP+++a  +++
  KKY22167.1 898 APPPRSYNQSPsiPPPSQAKVMTN 921
                 799999998888877776655544 PP

  == domain 2  score: -14.0 bits;  conditional E-value: 5
        SRA1   4 pPssvaapppPsveavklss 23 
                 pP+++  pppP + +  +++
  KKY22167.1 954 PPTPAGGPPPPVAPPYGARQ 973
                 55555555555443333333 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.8
        SRA1    3 ppPssvaapppPsveavklsskeeksls 30  
                  ppP++++ p +P++ a + ++ +++++s
  KKY22167.1 1088 PPPQASSFPSAPPQ-ANPYAAARPQQSS 1114
                  55666665654443.3444444443333 PP

  == domain 4  score: 36.3 bits;  conditional E-value: 1.2e-12
        SRA1   12 p...pPsveavklsskee...........kslsesesepeledvlsvLnqaLeaCrksvkkqvcddvekrLrlledsWksGkL.slpvrkrmevLsq 93  
                  +   pPs+ +++++s+++           +s   + s+p  e + s + +       s + qv  d ekrL++l d+ ++  L      ++m  Ls+
  KKY22167.1 1144 QaglPPSSRPGTAQSQSSrppvrkhpagdRSHIPTSSQPIYEILSSEMARVAGRAPASFQAQV-RDTEKRLNILFDHLNNEDLlKSGTIQQMIELSE 1239
                  245566666666555555556766666654444555667777777777777777778888888.5789******99998776525567789****** PP

        SRA1   94 elqskrWdaaDdihrsLmvDhvtevsqWmvGvkrLiaet 132 
                   l+sk +++a  +   +  + v e   WmvGvkrLi  +
  KKY22167.1 1240 ALRSKDFNTAQGLQMDIFTNKVDECGNWMVGVKRLIGMS 1278
                  ************************************765 PP

>> Sec16_C  Sec23-binding domain of Sec16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   8.6e-07    0.0031       1     236 [.     554     779 ..     554     799 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.6e-07
                 HHHHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHH---.---THHHHHHHHHHTTT-HHHHHHHHHH...........-HHHHHHHH CS
     Sec16_C   1 iqalLlrGdrekAlqlAldkklWahAlliasllgkelwkevvqefvrselkegensesLrvlyqvfaGnseeavdelvptsaraslqqaeeskeaeeal 99 
                 i + L+ G+ +kAl+++l+++  + A++ia + g+++ ++  + + +++ +     + Lr+l +v+  n  ++    v                 +  l
  KKY22167.1 554 ITRSLILGEFDKALDVCLEEERLSDAFMIAICGGQKCIQKAQEAYFSKQSG---GPNYLRLLASVVGKNLWDV----VH----------------NADL 629
                 567899*******************************************97...4599999999998886643....34................4568 PP

                 HSHHHHHHHHHHTS--HH.HHHHHHHHHHHHHT......T-HHHHHHHHHHT-SSS.................BSSTTS--B--SSSTTSHHHHH.... CS
     Sec16_C 100 dkWretvalvlsnrspsd.seaLtalGdlLask......grveaahicyllalsqtslfggld...spsarl.vllgadhvkfessfakdlesil.... 183
                  +W+e++a+++    +++      alGd L ++      g+   a++cyl   + ++++g      ++ +++    gad+ +f+ +  ++l++++    
  KKY22167.1 630 GNWKEVMATLCTFADEKEfPDLCEALGDRLEEQaksgaaGNQSEASFCYLAGSKLEKVVGIWLeelQKDEEIgLSEGADNTAFSLHA-RTLQQFIekvt 727
                 999999999999999999788888999999875223333677889999999944444443322000222334133344444333332.33322221111 PP

                 .HHHHHHHHH.HT........TT----CCCHHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
     Sec16_C 184 .ltEiyEfalslspaak....ekfaglphLlayKllhAavLaelGlvseAqkYcdaia 236
                  +  +  f             ++   l  L a  + +  + a +G++++Aq+Y d + 
  KKY22167.1 728 vFRKVTSFRD------VevknTSDWKLDALYAKYVEYSDIAASHGQLETAQRYLDLVP 779
                 1334444433......122335556788899999999999999999999999999875 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.6         5   1.8e+04      24      38 .]      83     101 ..      71     101 .. 0.60
   2 ?    3.9   0.0     0.031   1.1e+02      10      36 ..     120     148 ..     113     150 .. 0.79
   3 ?    1.8   0.7      0.14   4.9e+02      13      38 .]     170     196 ..     160     196 .. 0.74
   4 ?    1.8   0.0      0.14     5e+02      11      27 ..     212     229 ..     202     243 .. 0.70
   5 !   12.1   0.1   8.1e-05      0.29       3      34 ..     250     283 ..     248     287 .. 0.77
   6 ?   -0.8   0.0      0.95   3.4e+03      19      34 ..     310     326 ..     300     328 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5
                 E...EEEEE.TTSEEEEEE CS
        WD40  24 w...lasGs.dDgtvriWd 38 
                 +   +++G  d+g++ +Wd
  KKY22167.1  83 YsrgVIAGAlDNGSLDLWD 101
                 2444556855799999998 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.031
                 S.SSEEEEEEETTSSEEE.EEETTSEEEE CS
        WD40  10 H.ssvtslafspdgawla.sGsdDgtvri 36 
                 H + + +l+f+p  + l+ +G+ +g ++i
  KKY22167.1 120 HtGAIKALQFNPKYTNLVaTGGAKGEIYI 148
                 7555999*999999997539999999987 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.14
                 EEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40  13 vtslafspdgaw.lasGsdDgtvriWd 38 
                 + +l++++  +  +++Gs  g v +Wd
  KKY22167.1 170 IDCLDWNKKVSHiMVTGSAGGFVTVWD 196
                 7788544444444579**********9 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.14
                 SSEEEEEEETTSSE.EEE CS
        WD40  11 ssvtslafspdgaw.las 27 
                 ++v+++a++pd++  l++
  KKY22167.1 212 KPVSAVAWDPDKPTkLVT 229
                 679********9985444 PP

  == domain 5  score: 12.1 bits;  conditional E-value: 8.1e-05
                 EEEEEESS.SSEEEEE.EETTSSEEEEEETTSEE CS
        WD40   3 clrtltGH.ssvtsla.fspdgawlasGsdDgtv 34 
                 + rtl+GH s+v sl+   +d ++l+s+++D+  
  KKY22167.1 250 PERTLRGHdSGVLSLSwCAQDPDLLLSCGKDNRT 283
                 679*****888****7666666668999988764 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 0.95
                 ETTSSE.EEEEETTSEE CS
        WD40  19 spdgaw.lasGsdDgtv 34 
                 +p+++  +a++s Dg++
  KKY22167.1 310 NPHNPNlFATASFDGKI 326
                 5555551578999**98 PP

>> Sec16  Vesicle coat trafficking protein Sec16 mid-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.9e-05      0.11       4      34 ..     382     410 ..     379     500 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.9e-05
       Sec16   4 vsFGfGGklvtmfPkrkpslsgssvssskss 34 
                 vsFGfGG++v+++P++++  +   +s+++ +
  KKY22167.1 382 VSFGFGGRIVSVKPESIADGK--RTSKISIT 410
                 89***********95555444..33333333 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0013       4.6      34      91 ..     117     177 ..      98     178 .. 0.79
   2 ?    8.9   0.0   0.00049       1.8       3      90 ..     129     220 ..     127     222 .. 0.81
   3 ?   -2.4   0.0       1.7   6.2e+03      35      58 ..     255     278 ..     241     287 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0013
  ANAPC4_WD40  34 edkedsevrsLaWkpd.gklLavaysdgevrlldaesgk..vvhslsvksekavtclgWge 91 
                  ++k+ + +++L+++p+  +l a + ++ge+ + d ++ +  +   +++++ + + cl+W++
   KKY22167.1 117 SSKHTGAIKALQFNPKyTNLVATGGAKGEIYITDLNQVDapIRLGSTAARADDIDCLDWNK 177
                  5788999*******9835677899********999875511566667777779******86 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00049
  ANAPC4_WD40   3 wcpt.mDLiAlatedgellvfRlng..qrvwtleedkedsevrsLaWkpd.gklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  ++p+  +L+A + ++ge+++  ln     +  ++++++   + +L W+++  ++++ + + g v + d+++ k   +l+    k v+ + W 
   KKY22167.1 129 FNPKyTNLVATGGAKGEIYITDLNQvdAPIRLGSTAARADDIDCLDWNKKvSHIMVTGSAGGFVTVWDMKTRKESLTLNNYGRKPVSAVAWD 220
                  6666358999999*******9999844344455889999********877368888888999*********999999888888889999995 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.7
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavays 58 
                   ++ds v sL+W  ++  L  ++ 
   KKY22167.1 255 RGHDSGVLSLSWCAQDPDLLLSCG 278
                  567889999999776654444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.08u 0.31s 00:00:01.39 Elapsed: 00:00:00.52
# Mc/sec: 7395.08
//
Query:       KKY22168.1  [L=423]
Description: putative peroxin 14 17 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-35  120.9   3.6    7.7e-35  120.9   3.6    3.4  2  Pex14_N   Peroxisomal membrane anchor protein (Pex14p) conser


Domain annotation for each model (and alignments):
>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   3.6   4.3e-39   7.7e-35       1     157 []      25     174 ..      25     174 .. 0.72
   2 ?  -11.1  17.3         1   1.8e+04      63      99 ..     234     272 ..     209     400 .. 0.64

  Alignments for each domain:
  == domain 1  score: 120.9 bits;  conditional E-value: 4.3e-39
     Pex14_N   1 RedlveqAvkFLqdpsVrsaplekkvaFLesKGLtqeEIeeaLkraereeeasesavaassaseqaqeesasssatpqpqaasqtsqsspspsppaqqq 99 
                 R++l+e+A++FL+d+sVr+a++e+k +FLe KGLt +EIe+ L++ ++++  + +  +++s+  ++ ++s  ss+ +++++a+q   +s+s+s++ +  
  KKY22168.1  25 RSSLLEHATQFLEDESVRDASIESKTKFLEEKGLTVQEIEQVLQKIQETPVPQLT-HHEASD-LKTVHDSIVSSRDATTTSAQQI--TSTSTSSQFAPL 119
                 899******************************************6644433322.222222.2223333333333332222222..222222222222 PP

     Pex14_N 100 qqqy.rpPivtypefltkppkppppPlrtwrdllitatalaglgaglyglskryiaPmi 157
                 +  +  pPi+typefl +++k  ppPl+t ++ll++++++++++a++yg+sk+++ Pm+
  KKY22168.1 120 T--KdTPPIITYPEFLLRSQK--PPPLITAQRLLYAVYGASAITATVYGASKYLVEPML 174
                 2..2479**************..***********************************6 PP

  == domain 2  score: -11.1 bits;  conditional E-value: 1
     Pex14_N  63 s..eqaqeesasssatpqpqaasqtsqsspspsppaqqq 99 
                    ++  ++++s+s  ++p+++s++s+ssp++s +++++
  KKY22168.1 234 ElfHRDIATQTSPSLVRSPSSSSSSSSSSPTTSLSPSER 272
                 233333555555555555555555555555554222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1431  (0.0798148); expected 358.6 (0.02)
Passed bias filter:                      669  (0.0373138); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 2705.47
//
Query:       KKY22169.1  [L=401]
Description: hypothetical protein UCRPC4_g03356 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-28   98.7   6.6    2.5e-28   98.7   6.6    3.3  3  PAPA-1        PAPA-1-like conserved region
  ------ inclusion threshold ------
      0.088   12.5   9.2      0.038   13.7   1.3    2.4  2  Ydc2-catalyt  Mitochondrial resolvase Ydc2 / RNA splicing MRS
       0.25   11.9   2.3       0.63   10.6   2.3    1.7  1  PROL5-SMR     Proline-rich submaxillary gland androgen-regula
        1.6    6.9  14.1      0.037   12.3   4.0    2.2  2  eIF-3c_N      Eukaryotic translation initiation factor 3 subu


Domain annotation for each model (and alignments):
>> PAPA-1  PAPA-1-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.5       0.7   3.1e+03      68      68 ..      70      70 ..      29     116 .. 0.59
   2 ?   -0.1   0.8      0.37   1.7e+03      52      55 ..     176     179 ..     143     208 .. 0.63
   3 !   98.7   6.6   5.5e-32   2.5e-28       1      86 []     271     373 ..     271     373 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.7
                - CS
      PAPA-1 68 l 68
                +
  KKY22169.1 70 F 70
                1 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.37
                 XXXX CS
      PAPA-1  52 aeee 55 
                 +ee+
  KKY22169.1 176 DEED 179
                 1111 PP

  == domain 3  score: 98.7 bits;  conditional E-value: 5.5e-32
                 XXXXHHHHHHHHHHHHHHHHHHHHHHXHHHHHHXXXXXXXXXX..................XXXXXXXXXXXXXXXXXXX--S.-EEEEE-SS-EEEE- CS
      PAPA-1   1 EqalrraEmarrRknqsekrleeekaeTInkLLkkqagkkkkkkk................akaaaeaeeeeeeaeeaerpap.liRwvsnkdGsvlav 82 
                 E+ +rraEmarrRkn+sekr+eeek+ TInkLLkkq++kk++k                  ++++a++ee e e+ee ++p+p + Rwvs+k+G  l+v
  KKY22169.1 271 EHRMRRAEMARRRKNLSEKRNEEEKMTTINKLLKKQTTKKRGKSLapdalsaavaadsenpNNDTADNEELECEEEEIQKPNPlYARWVSGKNGIKLGV 369
                 89*****************************************669*****88888887775556666666666777888******************* PP

                 -GGG CS
      PAPA-1  83 peel 86 
                 pee+
  KKY22169.1 370 PEEW 373
                 **98 PP

>> Ydc2-catalyt  Mitochondrial resolvase Ydc2 / RNA splicing MRS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   1.4     0.016        71     222     273 ..     162     211 ..     102     217 .. 0.62
   2 ?   13.7   1.3   8.5e-06     0.038     129     206 ..     236     319 ..     236     360 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.016
                   HHHHHHHHH--STTT...................HHHHHHHHHHHHHHHHHH CS
  Ydc2-catalyt 222 eaylekwkkkkkskkkkkkksklakkdeesvdikKlDDLaDsllqgltwlew 273
                   e+ l++ +++++++ + +  ++    + ++++ + +D+L+Ds l  ++++  
    KKY22169.1 162 EEDLDDEDEDENEEDEEDDEEE--DAEGDEDEGEDDDELNDSALPTVAVNDV 211
                   3333333333333333333333..34555666667778****9999988765 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 8.5e-06
                   HHHHHHHHHHHHHTT---.EEEEE-CCHHHHHHH...........HHH-----------HHHHHHHHHHTTS............ CS
  Ydc2-catalyt 129 yAvlytlkqesegkkaks.vvigvePkrvvnYWleeessesstkekkkkkksskekKkvkidlvgswLsaeikska.....kks 206
                   yA l   ++++ ++ ++  + +++eP+   ++  ee+  +  + + ++k  s+k++++ k++ + ++L++++ +k       + 
    KKY22169.1 236 YARLTKRQRNRGDEVEGGfMALPMEPQIKKHFTAEEHRMRRAEMARRRKNLSEKRNEEEKMTTINKLLKKQTTKKRgkslaPDA 319
                   6667777666666666668********************999999**************************9666544444222 PP

>> PROL5-SMR  Proline-rich submaxillary gland androgen-regulated family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.3   0.00014      0.63      22      84 ..      77     136 ..      73     154 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00014
   PROL5-SMR  22 cqRgprghdprrplapsPdPnkvqfgvpstlPpyglsllapplelllgpgkippsslivyilg 84 
                 ++ g    d + + ap+P+  +v++  p+++P++  ++++ p+  l        ss+ + +++
  KKY22169.1  77 AEGGTDDDDMEMQEAPPPPTTRVRIKAPNQPPTS--TRVNAPRGNL-KATSGLSSSPAPKGTA 136
                 555666678889999999999*******999973..4777776553.3333333444444444 PP

>> eIF-3c_N  Eukaryotic translation initiation factor 3 subunit 8 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   2.4     0.045     2e+02     127     167 ..      38      76 ..      31     126 .. 0.57
   2 ?   12.3   4.0   8.3e-06     0.037     134     227 ..     153     312 ..     143     340 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.045
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......... CS
    eIF-3c_N 127 dikkyredPeeeeeeeeedededdegedeededeksvkate 167
                 ++ +y ed   ee+eeee   +d+ege++e+ d+ + + +e
  KKY22169.1  38 KVIDYSEDFGDEEDEEEEL--DDAEGEEDEEMDDFDKIGAE 76 
                 5555555444333333333..33333333333333332222 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 8.3e-06
                 XXXXXXXXXXXXXXXXXXXXXXXX........................................................................... CS
    eIF-3c_N 134 dPeeeeeeeeedededdegedeededeksvkateavkkases......................................................... 175
                 dP+ +e  eeed d++de+e+eede++++ +++e  +  +e                                                          
  KKY22169.1 153 DPDDDELSEEEDLDDEDEDENEEDEEDDEEEDAEGDEDEGEDddelndsalptvavndvdaeeddedlddglnpdgsrastpdyarltkrqrnrgdeve 251
                 677777777777777777777777777777777777666655667777788888888888899999999999999999999999999999999999999 PP

                 ......................................XXXXXXXXXHHHHHHHHH.HHHHHT CS
    eIF-3c_N 176 ..........kvekeeeedeeteeeklskkekkekvkmfekkeeitvevvikklke.ilsaRg 227
                           +   +++ + e+++ + ++  +++k +  + +ee ++ +++k lk+   + Rg
  KKY22169.1 252 ggfmalpmepQ--IKKHFTAEEHRMRRAEMARRRKNLSEKRNEEEKMTTINKLLKKqTTKKRG 312
                 99999998652..22233333333334444444444444444444444454444321334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1790  (0.0998383); expected 358.6 (0.02)
Passed bias filter:                      644  (0.0359195); expected 358.6 (0.02)
Passed Vit filter:                       128  (0.00713927); expected 17.9 (0.001)
Passed Fwd filter:                        75  (0.00418317); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.22u 0.39s 00:00:01.61 Elapsed: 00:00:00.53
# Mc/sec: 2260.51
//
Query:       KKY22170.1  [L=338]
Description: hypothetical protein UCRPC4_g03357 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2258.86
//
Query:       KKY22171.1  [L=69]
Description: putative diphthamide biosynthesis protein 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-12   47.6   0.2    1.2e-12   47.3   0.2    1.1  1  zf-CSL    CSL zinc finger


Domain annotation for each model (and alignments):
>> zf-CSL  CSL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.2   6.7e-17   1.2e-12       1      44 [.       9      48 ..       9      59 .. 0.91

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 6.7e-17
                EEEEGGGSEEETTTTEEEEEETTSSEEEEEHHHHHTT....--E CS
      zf-CSL  1 develedfefdeeeesyyypCRCgdeFelteedleegaegaevv 44
                de+e+ed++ de+ e+y+ypC+Cgd+Fe+  +dl++g+e    +
  KKY22171.1  9 DEIEIEDMTLDENLEIYHYPCPCGDRFEIAIADLRDGEE----I 48
                89**********************************944....3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 554.68
//
Query:       KKY22172.1  [L=222]
Description: putative pth2 family peptidyl-trna hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1667.44
//
Query:       KKY22173.1  [L=335]
Description: hypothetical protein UCRPC4_g03360 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-33  115.5   0.1    3.2e-33  115.1   0.1    1.1  1  DUF4448       Protein of unknown function (DUF4448)
     0.0008   18.9   0.9     0.0025   17.3   0.9    1.9  1  Rax2          Cortical protein marker for cell polarity
  ------ inclusion threshold ------
      0.013   16.3   2.6      0.013   16.3   2.6    2.9  3  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc
      0.034   13.6   0.8      0.052   12.9   0.0    1.6  2  DUF5305       Family of unknown function (DUF5305)
       0.13   11.7   0.2       0.61    9.5   0.0    2.3  2  SKG6          Transmembrane alpha-helix domain


Domain annotation for each model (and alignments):
>> DUF4448  Protein of unknown function (DUF4448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.1   8.9e-37   3.2e-33       5     185 ..      82     265 ..      78     268 .. 0.87

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 8.9e-37
     DUF4448   5 hslgpfirCtpdrynkkgssePFCtPkegselkvgktYyiTWdprfFdekenekVkihlsyvkestkekglkksffssdwlpnsdGfypltvdeewlkg 103
                  + ++++ C    ++  g ++PFC P++gs+++vg+   +TWdp++F  +++++V i++sy+++st++++  +s++ssd+++n+ G++ + ++++wl+g
  KKY22173.1  82 ATSSSVAEC----QSSGGTYAPFCKPSDGSSVTVGTSFDVTWDPSYF--NSTTTVAIEISYANSSTSSSS--DSVYSSDEVENTVGYMSIVPKKSWLGG 172
                 567789999....4555******************************..89****************975..89************************* PP

     DUF4448 104 kkservtivlvslqpdnvkdeveikkGpkVsltkkedlk...........kledkeseegkkaekyalaialPvvvvvlvl.gligfvlwnrkk 185
                 ++s ++t+ ++ l++d+++ +++i +Gp+V+l++ + ++            l++ +++++ ++++  l+++l +++++++l ++ g++lw r++
  KKY22173.1 173 SSSANITLNFAVLEDDGSS-SANILTGPTVTLESDNTSTesssdsetsgsLLSSSTESSQRSSKNLGLVVGLTIALAFICLlFVSGVFLWYRRY 265
                 ********99999999986.9**************99999*********944455677788888999999999999887772555555565554 PP

>> Rax2  Cortical protein marker for cell polarity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.9   6.9e-07    0.0025     135     195 ..     210     268 ..     117     282 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 6.9e-07
        Rax2 135 sissifleksnsfssssdlkkkkkklsrgfVVlIgLAlALgtvallgllgiilayirkkre 195
                 + ss  +e s s+ sss+ +++++  ++g+VV  gL +AL+ + ll + g++l y r k +
  KKY22173.1 210 TESSSDSETSGSLLSSSTESSQRSSKNLGLVV--GLTIALAFICLLFVSGVFLWYRRYKMN 268
                 22222233444444444444778888888886..899***************988554433 PP

>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   1.7       1.1   4.1e+03      27      64 ..      38      79 ..      30      92 .. 0.53
   2 ?   16.3   2.6   3.5e-06     0.013       2      56 ..     102     159 ..     101     172 .. 0.68
   3 ?    0.1   1.1       0.4   1.4e+03      14      60 ..     177     222 ..     165     233 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.1
  GPI-anchored 27 gtvtlvLcagssnnlksvkti....asgiknsdgsytwtvpa 64
                  ++v  +L++ ++++ +s +++    as+++++++s t t ++
    KKY22173.1 38 SAVPTSLLTAETEESTSSEALltasASSVSGAATSPTATGSS 79
                  445555555555444444444221245555554555555444 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 3.5e-06
  GPI-anchored   2 sPssgevvtagkpvtitWkdsg.tdpgtvtlvLcagssnnlksvkti..asgiknsdg 56 
                   +Ps g++vt+g+++++tW++s  ++ +tv + +   +s++ +s +++   ++++n+ g
    KKY22173.1 102 KPSDGSSVTVGTSFDVTWDPSYfNSTTTVAIEISYANSSTSSSSDSVysSDEVENTVG 159
                   79******************98855566666666555555555544412555556555 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.4
  GPI-anchored  14 pvtitWkdsgtdpgtvtlvLcagssnnlksvktiasgiknsdgsytw 60 
                   ++t++++   +d+g+ +  +++g++ +l+s  t +++ ++s++s + 
    KKY22173.1 177 NITLNFAVL-EDDGSSSANILTGPTVTLESDNTSTESSSDSETSGSL 222
                   556666664.5778888888999999999999999999988766554 PP

>> DUF5305  Family of unknown function (DUF5305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2      0.99   3.5e+03      74      85 ..     128     139 ..     109     161 .. 0.53
   2 ?   12.9   0.0   1.4e-05     0.052      44     139 ..     170     259 ..     166     269 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.99
     DUF5305  74 ktsrlpiplteq 85 
                 +t  ++i+  ++
  KKY22173.1 128 TTVAIEISYANS 139
                 222222222222 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.4e-05
     DUF5305  44 lglsvgtseltvvlevnvegeidgesieesktsrlpiplteqtyeikkdetdeengeitetvtvkespslaegilliilgllaliglvvlirriif 139
                 lg+s+ + ++t+++ v  ++    +s +++  +  +++l ++ ++ ++++ +e++g++  ++t++ ++s ++ ++l++ +++al+++++l+++ +f
  KKY22173.1 170 LGGSS-SANITLNFAVLEDD----GSSSANILTGPTVTLESDNTSTESSSDSETSGSLLSSSTESSQRSSKN-LGLVVGLTIALAFICLLFVSGVF 259
                 77677.88899999888877....999999999999************99**********************.88888888888888888877655 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.92   3.3e+03       6      12 ..     126     132 ..     122     132 .. 0.71
   2 ?    9.5   0.0   0.00017      0.61       3      37 ..     230     264 ..     228     265 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.92
        SKG6   6 nsntvaI 12 
                 +++tvaI
  KKY22173.1 126 STTTVAI 132
                 6777776 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00017
        SKG6   3 dssnsntvaIavaVaVPVaViiivLlailifvrRR 37 
                 +  +s++   +v+  + +a i ++++ + ++++RR
  KKY22173.1 230 SQRSSKNLGLVVGLTIALAFICLLFVSGVFLWYRR 264
                 55667777778999999999**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1261  (0.070333); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.22s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 2626.50
//
Query:       KKY22174.1  [L=263]
Description: hypothetical protein UCRPC4_g03362 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-11   44.6   0.0    2.1e-11   44.1   0.0    1.3  1  AKAP7_NLS  AKAP7 2'5' RNA ligase-like domain


Domain annotation for each model (and alignments):
>> AKAP7_NLS  AKAP7 2'5' RNA ligase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   1.2e-15   2.1e-11      72     160 ..      65     186 ..      49     236 .. 0.81

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 1.2e-15
                 HHHHHTT..S--EEEEEEEEEE.....TTTEEEEEE--SHHHHHHHHHHHHHHHHHHTTT--B--SS-....................---EEEEEEGG CS
   AKAP7_NLS  72 ikdaldn..kplslrlkGletfnddpakarVlYakveeesneekLqeladriikafeeaglvlekdkkk...................vklHaTlmnsr 149
                 ++++ld   +pl+++lkGl+tf     ++rVl+ak ++    ++L+ +a ++ +af +aglv+ + +                     + lHaT++n +
  KKY22174.1  65 LTEMLDSpsTPLKISLKGLHTFTPTSPQTRVLFAKPHDP--TDRLLPFATKVLQAFIDAGLVEPRPQAPqtrtngtddksesesksesLILHATIVNMT 161
                 4555655569************999999********954..7********************9988777899*************************** PP

                 G-THHHHTT-..............- CS
   AKAP7_NLS 150 krkkkqaksk..............e 160
                 + k k++ ++              +
  KKY22174.1 162 YHKSKSKPQQqhrhrrsrrtppppN 186
                 *****99998666666666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       917  (0.0511462); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1602.94
//
Query:       KKY22175.1  [L=348]
Description: putative ribose-phosphate pyrophosphokinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-45  153.5   0.4    5.2e-45  152.1   0.1    1.8  2  Pribosyltran_N  N-terminal domain of ribose phosphate pyropho
    5.5e-35  121.1   0.4    1.4e-28  100.1   0.3    2.6  2  Pribosyl_synth  Phosphoribosyl synthetase-associated domain
    2.2e-14   53.3   1.2    3.7e-13   49.3   0.7    2.2  2  Pribosyltran    Phosphoribosyl transferase domain
  ------ inclusion threshold ------
      0.015   14.7   0.1      0.028   13.9   0.1    1.4  1  UPRTase         Uracil phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> Pribosyltran_N  N-terminal domain of ribose phosphate pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.1   0.1   1.2e-48   5.2e-45       1     116 []       6     123 ..       6     123 .. 0.98
   2 ?   -1.5   0.0      0.51   2.3e+03      43      86 ..     230     269 ..     197     283 .. 0.56

  Alignments for each domain:
  == domain 1  score: 152.1 bits;  conditional E-value: 1.2e-48
  Pribosyltran_N   1 lkifagssskeLaekiakrlgvelgkakvsrfadgEikveieesvrgkdvfiiqsls.kpvndnlmelllmidalrrasakritaViPylgysrq 94 
                     +k+++g+s++eLa+++a+rlg+el+k+ v +++++E++v+i esvr++dvfi+qs+  +++nd lmell+mi+a+++asa+ritaViP ++y+rq
      KKY22175.1   6 IKLLTGNSHPELAKAVADRLGIELTKIMVLQYSNQETSVTIGESVRDEDVFILQSTRpNDINDGLMELLIMINACKTASARRITAVIPNFPYARQ 100
                     689*****************************************************8688*********************************** PP

  Pribosyltran_N  95 drk.ksrepisaklvaklLeaaG 116
                     d+k ksr+pi+akl+a++L++aG
      KKY22175.1 101 DKKdKSRAPITAKLMANMLQTAG 123
                     ***999***************99 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.51
  Pribosyltran_N  43 esvrgkdvfiiqslskpvndnlmelllmidalrrasakritaVi 86 
                      +vr+   +++ +++    d+   l   +d l +  a++++a++
      KKY22175.1 230 GTVRDMVAILVDDMA----DTCGTLAKAADVLIQHGAREVVAIV 269
                     455544444444433....3344455555666666666666665 PP

>> Pribosyl_synth  Phosphoribosyl synthetase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.4e-07    0.0011       5      37 ..     186     218 ..     183     225 .. 0.90
   2 !  100.1   0.3   3.2e-32   1.4e-28      70     183 ..     221     343 ..     217     344 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.4e-07
                     EEEEESSGGGHHHHHHHHHHTT-EEEEE----- CS
  Pribosyl_synth   5 avivakspgsakkatsyaerlrlglavihGeqk 37 
                     +viv+ + g ak+ats a+rl l  a+ih e+ 
      KKY22175.1 186 CVIVSPDAGGAKRATSMADRLDLPFALIHKERA 218
                     69***************************9975 PP

  == domain 2  score: 100.1 bits;  conditional E-value: 3.2e-32
                     -------EES--TTSEEEEEEEEE-S-HHHHHHHHHHHHTT--EEEEEEEEE---TTHHHHHHHSS--EEEEESSS--HHHHH.........T-T CS
  Pribosyl_synth  70 kekppltvvGdvgGriaiivddliddvesfvaaaevlkerGaykiyvlathGllssdaprlleesaidevvvtntipheiqkl.........rcs 155
                      e   +t+vG v   +ai+vdd+ d   ++ +aa+vl ++Ga  +++++thG+ls +a+++l+ s++  +vvtnt+p   +kl         +  
      KKY22175.1 221 NEVSRMTLVGTVRDMVAILVDDMADTCGTLAKAADVLIQHGAREVVAIVTHGILSGKASETLKGSKLSRLVVTNTVPIAEDKLealtvpegqKGC 315
                     566789***********************************************************************877776111222221446 PP

                     TEEEE--HHHHHHHHHHHHHT---TT-S CS
  Pribosyl_synth 156 kiktvdislllaeairrihngesmsylf 183
                     +++t+dis +laea rr hnges+s+lf
      KKY22175.1 316 RLETIDISPVLAEACRRTHNGESVSFLF 343
                     799************************9 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.025   1.1e+02      43      75 ..      17      49 ..      16      71 .. 0.77
   2 !   49.3   0.7   8.3e-17   3.7e-13      32     125 ..     187     275 ..     177     302 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.025
                  HHHHHHHHSTT-EE-EEEEEE-TTT--EE.... CS
  Pribosyltran 43 fakiladeLevplayvrkvkyrpdgseeaargs 75
                  +ak++ad+L+++l+ + +  y+++ +++++  s
    KKY22175.1 17 LAKAVADRLGIELTKIMVLQYSNQETSVTIGES 49
                  79************8888888777777665433 PP

  == domain 2  score: 49.3 bits;  conditional E-value: 8.3e-17
                   EEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSEEEEEEEE...E CS
  Pribosyltran  32 vvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgTllaalelLkekgpeevriavlv...d 125
                   v+v ++ gG  +a+ +ad+L++p+a + k++ rp+  + ++        l + ++++  ++VDD+ dt gTl +a++ L  +g+ ev ++v +    
    KKY22175.1 187 VIVSPDAGGAKRATSMADRLDLPFALIHKERARPNEVSRMT--------LVGTVRDMVAILVDDMADTCGTLAKAADVLIQHGAREVVAIVTHgilS 275
                   9***************************************9........9***********************************999998875553 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   6.2e-06     0.028     114     168 ..     227     281 ..     201     299 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.2e-06
     UPRTase 114 kLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvlaseegvkr 168
                  L  ++++  ++l+D +  T g++a+a ++L+++g++e   +v   + s ++ ++
  KKY22175.1 227 TLVGTVRDMVAILVDDMADTCGTLAKAADVLIQHGAREVVAIVTHGILSGKASET 281
                 4556678888*************************98776666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2278.36
//
Query:       KKY22176.1  [L=239]
Description: putative 40s ribosomal protein s6 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.5e-60  200.2   0.1    8.5e-60  200.2   0.1    1.7  2  Ribosomal_S6e  Ribosomal protein S6e


Domain annotation for each model (and alignments):
>> Ribosomal_S6e  Ribosomal protein S6e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.2   0.1   4.7e-64   8.5e-60       1     125 []       1     126 [.       1     126 [. 1.00
   2 ?   -1.8   0.3      0.16   2.8e+03      89     115 ..     195     221 ..     169     234 .. 0.54

  Alignments for each domain:
  == domain 1  score: 200.2 bits;  conditional E-value: 4.7e-64
                    -EEEEEETTTTEEEEEE-.CHHHCTTCTT-BSSEEEECCTTTSSSTS-EEEEEEEEETTC-BB-TTS-SSSEEEEEEETTSSSS-SSSSS-EEEEE CS
  Ribosomal_S6e   1 mklnisdpatgkqkliev.dekklrtligkrigeevdgdalGeelkgyvlkitggsdkqGfpmkqgvltpgrvrlLlskggvgyrprrkGerkrks 95 
                    mkln+s+p++g+qkliev de+klr +++k++g+ev +d+lG+e+kgy+++itgg+dkqGfpmkqgv++p+rvrlLls+g+++yrprr+Gerkrks
     KKY22176.1   1 MKLNVSYPSNGTQKLIEVdDERKLRVFMEKKMGQEVPADSLGDEWKGYIVRITGGNDKQGFPMKQGVMHPTRVRLLLSDGHSCYRPRRTGERKRKS 96 
                    9*********************************************************************************************** PP

                    EE-SB--SSEEEEEEEEEE--SS--TTTSS CS
  Ribosomal_S6e  96 vrGcivsadisqlnlvivkkgekdiegltd 125
                    vrGciv++d+++l+l ivk+ge di+gltd
     KKY22176.1  97 VRGCIVAQDLAVLALSIVKQGEGDIPGLTD 126
                    *****************************8 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.16
                    S-EEEEEEE-SB--SSEEEEEEEEEE- CS
  Ribosomal_S6e  89 GerkrksvrGcivsadisqlnlvivkk 115
                      ++r+    +  ++d +ql ++ v++
     KKY22176.1 195 ALKRRRAEASKDAANDYAQLLAKRVHE 221
                    444444444444555555555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1741.02
//
Query:       KKY22177.1  [L=369]
Description: hypothetical protein UCRPC4_g03365 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.024   14.5   0.1      0.049   13.5   0.1    1.5  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   2.7e-06     0.049       2      33 ..      66     107 ..      65     118 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.7e-06
  F-box-like   2 srLPdEiLlqIFsy.......L.pps.dLlr..lalVCrrWrr 33 
                 + LP+Ei lqI+++       + p   dL+   l  V+r++r+
  KKY22177.1  66 LKLPNEIVLQILQHilvertpIhP-VlDLAEtrLVTVSRDFRS 107
                 68**********864333333312.235554226688888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2726.28
//
Query:       KKY22178.1  [L=460]
Description: putative diphthamide biosynthesis [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.4e-115  384.0   0.0   6.7e-115  383.7   0.0    1.1  1  Diphthamide_syn  Putative diphthamide synthesis protein


Domain annotation for each model (and alignments):
>> Diphthamide_syn  Putative diphthamide synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  383.7   0.0  3.8e-119  6.7e-115       1     299 [.     125     428 ..     125     434 .. 0.97

  Alignments for each domain:
  == domain 1  score: 383.7 bits;  conditional E-value: 3.8e-119
  Diphthamide_syn   1 fPegllpdsaeiadileef..gaevvilgDttYGaCcvdevaaehlgadllvHyGhsclspvd..rlpvlYvfveieldvehlvetlkknfkek 90 
                      fPegll ++++i+di+++f  + e++i+gD+tYGaCcvd+++a +lg+dllvHy+hscl+pv+  ++++lY+fv+i++d++h+++tlk+nf+++
       KKY22178.1 125 FPEGLLLFATTISDIITQFcpETETLIMGDVTYGACCVDDYTATALGCDLLVHYAHSCLIPVSmtKISTLYIFVDISIDTSHMIATLKRNFQTG 218
                      9***************99989999*************************************9889**************************99* PP

  Diphthamide_syn  91 kkivlvstiqyahaleevkeeleeegyevvkvpqsekplspgevlgctspklkee..eeevdailyigdgrfhllslmlsnpklpvyrydpysk 182
                      k+i++v+tiq++++l+ +k+ le++g+++v vpq  +pls+ge+lgctsp l ++    ++d ily+gdgrfhl+s+m++np++p+yrydpys+
       KKY22178.1 219 KTIAMVGTIQFNSTLHGLKSVLESAGFTIV-VPQI-MPLSKGEILGCTSPDLLNNpkIPKIDMILYLGDGRFHLESAMIANPSIPAYRYDPYSR 310
                      ***********************99**999.****.****************9987766899******************************** PP

  Diphthamide_syn 183 klteesydakkllrrRyaaiekakdakkvGiivgtlgvqgrlelverlkkllkeagkksylvlvgelnpakLanfaeidafVlvaCprlsiddg 276
                       lt+e+yd++++++ R +a++ ak+akk+G+i+g+lg+qg+++++  +++ l++ g  ++ +l++e++p kLa+++++d++V++aCprlsid+g
       KKY22178.1 311 ILTRETYDHEEMMMLRSQAVSGAKSAKKWGLILGSLGRQGNPHTLTMIENHLDSMGMPFVRLLLSEIFPGKLAQMDDVDCWVQIACPRLSIDWG 404
                      ********************************************************************************************** PP

  Diphthamide_syn 277 keFekPvltpyElevalg.erewt 299
                      ++F++P+ltpyE+ v+lg +++w+
       KKY22178.1 405 YAFPRPLLTPYEALVVLGqRESWE 428
                      ******************888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 2761.60
//
Query:       KKY22179.1  [L=329]
Description: putative 3-oxo-5-alpha-steroid 4-dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-42  144.2   0.1      5e-40  137.5   0.1    2.1  1  DUF1295     Protein of unknown function (DUF1295)
     0.0049   17.3   0.0      0.094   13.2   0.0    2.4  2  ICMT        Isoprenylcysteine carboxyl methyltransferase (ICM
  ------ inclusion threshold ------
      0.064   13.2   0.0       0.17   11.9   0.0    1.7  1  Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
        1.3    7.8   5.5       0.38    9.6   0.2    2.5  4  DUF726      Protein of unknown function (DUF726)


Domain annotation for each model (and alignments):
>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.5   0.1   1.1e-43     5e-40      37     235 .]     102     322 ..      88     322 .. 0.82

  Alignments for each domain:
  == domain 1  score: 137.5 bits;  conditional E-value: 1.1e-43
     DUF1295  37 klrrllvllLvvlWglRLalhllrrtlkkgeDkryeelrkelgktiallsllvvfvlQavllylvalpvllaaaskeeq......alkaldviglalwl 129
                 ++r++++ + v +W+ RL+ +l+ r+l +geD r++++r++ +      +++  f++Qa ++ l  +pvl++++   ++      +++++dvigl l++
  KKY22179.1 102 NWRQVVLSTAVSIWATRLGSYLFARILADGEDSRFKSIRDSPP------KFFGAFMAQATWVSLCLMPVLAINSLPASTfaalgtTVGITDVIGLLLYV 194
                 79**************************************664......7999*****************9998655557778878899********** PP

     DUF1295 130 vgivlealaDqQlsaf...kkdpankgkvldsGLwrysRHPNYfgealiWwglflialea.................leglealai....agpllltll 204
                  g+ +e++aD+Q++a+   kk+ +    +l++GLw+ sRHPNYfge  +W g+    + +                 ++++  la+    ++p ++t+l
  KKY22179.1 195 GGLSFEVTADRQKNAWvqeKKQKKHDEDFLTRGLWSKSRHPNYFGESTLWTGIATTVAGVlvsnagtagmglaaagvGAKA--LALltagVSPAFVTFL 291
                 ****************877666666677**********************9986432222111122222222222112222..2222223589****** PP

     DUF1295 205 lvfvsgipllEkkalkkykdkeeyreYqkkt 235
                 l++vsg+p+ Ekk ++ky+d+e+y++++++t
  KKY22179.1 292 LLKVSGVPMSEKKYDEKYGDREQYKKWKRET 322
                 ***************************9986 PP

>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.099   4.4e+02      11      39 ..     103     131 ..      99     176 .. 0.65
   2 !   13.2   0.0   2.1e-05     0.094      30      52 ..     218     240 ..     190     269 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.099
        ICMT  11 lrlvvmatlGeiwttrvailpdhklvksg 39 
                  r vv++t+ +iw tr+     +++ ++g
  KKY22179.1 103 WRQVVLSTAVSIWATRLGSYLFARILADG 131
                 68899999999999998775555555544 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.1e-05
        ICMT  30 lpdhklvksglykylrHPnYllf 52 
                 + d    ++gl++  rHPnY++ 
  KKY22179.1 218 KHDEDFLTRGLWSKSRHPNYFGE 240
                 6788899**************84 PP

>> Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.8e-05      0.17      42     101 ..     186     248 ..     160     256 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.8e-05
  Steroid_dh  42 lllgivlfvlgmliniksdiiLr...elrkegetkykiprgglFelvsapnyfgEilewigya 101
                  ++g++l+v g+  ++++d++     + +k++++     + gl+     pnyfgE+  w g a
  KKY22179.1 186 DVIGLLLYVGGLSFEVTADRQKNawvQEKKQKKHDEDFLTRGLWSKSRHPNYFGESTLWTGIA 248
                 5899*********999999876555599999999999999*******************9876 PP

>> DUF726  Protein of unknown function (DUF726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2      0.29   1.3e+03      17      64 ..      26      70 ..      24      82 .. 0.74
   2 ?   -3.3   0.0      0.75   3.4e+03      43      91 ..      91     139 ..      68     142 .. 0.64
   3 ?   -0.3   0.0     0.092   4.1e+02      32      77 ..     172     217 ..     149     225 .. 0.65
   4 ?    9.6   0.2   8.4e-05      0.38       4      85 ..     233     314 ..     230     319 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.29
      DUF726 17 galigltggLaaPlvaagigallaglGltgsaafLasvggsavitall 64
                g+ +g+ g +a P + a     +    l+gs ++L+ ++ s ++ a  
  KKY22179.1 26 GLAFGIQGAVAIPSILAQSERFY---DLSGSLTYLSCTALSLFLPAIR 70
                56799999999999999887776...7888888888887665665554 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.75
      DUF726  43 GltgsaafLasvggsavitallgaagAklsvkkmkkrvkeikdFefipl 91 
                 Gl+g  + L+    + v+++++++   +l+ + +++  ++ +d  f+ +
  KKY22179.1  91 GLSGHGGPLGFNWRQVVLSTAVSIWATRLGSYLFARILADGEDSRFKSI 139
                 5555555555555566777777777777777777777776666666655 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.092
      DUF726  32 aagigallaglGltgsaafLasvggsavitallgaagAklsvkkmk 77 
                 a++ +al +++G+t + ++L  vgg+++ +++    +A +  kk k
  KKY22179.1 172 ASTFAALGTTVGITDVIGLLLYVGGLSFEVTADRQKNAWVQEKKQK 217
                 3445666667788888887777777776555555666666555555 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 8.4e-05
      DUF726   4 krylliglAglaGgaligltggLaaPlvaagigallaglGltgsaafLasvggsavit.allgaagAklsvkkmkkrvkeikd 85 
                 ++  + g  +l  g+  +++g L++   +ag+g + ag+G+ + a  L++    a++t  ll ++g  +s kk++++ ++ ++
  KKY22179.1 233 RHPNYFGESTLWTGIATTVAGVLVSNAGTAGMGLAAAGVGAKALAL-LTAGVSPAFVTfLLLKVSGVPMSEKKYDEKYGDREQ 314
                 555566667777777788999999999999***9999999988888.555555676651578999*********998887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.33s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 2005.72
//
Query:       KKY22180.1  [L=3961]
Description: putative ubiquitin-protein ligase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-96  322.0   0.0    4.7e-96  322.0   0.0    4.7  4  DUF913    Domain of Unknown Function (DUF913)
    3.4e-95  319.0   0.1    6.1e-95  318.2   0.1    1.4  1  HECT      HECT-domain (ubiquitin-transferase)
    2.6e-45  155.4   0.7    2.6e-45  155.4   0.7    5.0  6  DUF908    Domain of Unknown Function (DUF908)
    4.9e-27   92.5  25.6    1.7e-09   36.8   3.3    4.2  3  UBM       Ubiquitin binding region
  ------ inclusion threshold ------
      0.042   14.2   0.2       0.71   10.3   0.0    2.8  2  HAMP      HAMP domain
      0.061   13.3   0.2       0.18   11.7   0.2    1.8  1  UBA       UBA/TS-N domain
       0.26   11.0  15.0      0.019   14.7   6.1    2.8  2  TAF4      Transcription initiation factor TFIID component TAF
        1.7    7.5   9.0        3.8    6.3   9.0    1.6  1  NARP1     NMDA receptor-regulated protein 1


Domain annotation for each model (and alignments):
>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.0   0.0   2.1e-99   4.7e-96       2     368 .]     479     918 ..     478     918 .. 0.90
   2 ?   -0.1   0.1      0.16   3.5e+02     272     349 ..    1986    2075 ..    1941    2080 .. 0.66
   3 ?   -3.0   1.3       1.2   2.6e+03     273     299 ..    2296    2341 ..    2255    2375 .. 0.45
   4 ?   -1.4   4.9      0.39   8.7e+02     259     314 ..    2773    2815 ..    2731    2845 .. 0.41

  Alignments for each domain:
  == domain 1  score: 322.0 bits;  conditional E-value: 2.1e-99
      DUF913   2 ravrvlDtlitniqnafqafanakgldalidrledevdealeevkegkgtpaelrssvvdyeipfqrqqlLKslLkfikhlmqssgsgtdrllrnlids 100
                 r++++++t+ +++++ ++ +++++ ++a+ d++ +evd++l++v++gkg+ +e+rs ++dy+ip+++qq+++ +L fi  ++ +sg++ dr lrnlids
  KKY22180.1 479 RILEFFETFCHTVKDGINFLSSNRAVEAVTDLVAFEVDNSLQQVQAGKGLAEEFRSISTDYRIPYFHQQTIRFILPFIDGVIVQSGTAGDRILRNLIDS 577
                 89************************************************************************************************* PP

      DUF913 101 sqLlksLrkIienakvfGssvwslAvnilsdfihnePtslavlqeaglteslLeal........................................... 156
                 ++Ll+++++I+e+ + fGs+vws +v++ s+f+hnePts++vl+ea l++++L ++                                           
  KKY22180.1 578 PALLAAFKSILEHGQEFGSHVWSSVVKVTSSFLHNEPTSYTVLAEADLPQTFLASIgapipprptpvseqsqqtedesrsenadmtmsdqdsdtsqdst 676
                 *************************************************************************************************** PP

      DUF913 157 ................lakgilpsrEvlasiPnvlsalcLNnaGlelfksskaleslfeifespehvkamesdgdlasnlGssfdELvRhhpsLktaii 239
                                  + +ilps+E++a + +++sa+cL ++G + f+ss+al+ +f++f sp+hvk + ++ +  +++G++fdEL+Rhhp L+ +i+
  KKY22180.1 677 sereprlvhaleniggANVKILPSAEAIANVSQAFSAICLTTTGYNHFRSSGALSIFFDVFQSPAHVKSL-TEANYLQSIGNTFDELARHHPGLRMDIL 774
                 ****************999***************************************************.**************************** PP

      DUF913 240 kavikmlarvvelgkeka......akllved............assasskseasssssssetkeeek............ssededvemedaeeeteses 308
                 + +i m+a+++ lgk k       +kl++ed            a          ++s++                     +++++ ++e a + ++ e 
  KKY22180.1 775 SCLIVMVAKLRLLGKFKTleigagIKLWTEDasgklevaggkeA--------LWAESCT-------FdlestgsdyqitLPNSDKLNVEPAGKFSHPEV 858
                 *******************************7776554432220........2222222.......122111223344333333344444444444444 PP

      DUF913 309 deseeseeekeknslldyilnvakFLeallsnnslcreFvekgGiellldlltlpslPyd 368
                 +  +++e+++++ +++d+i++v+  L ++++n+slc++Fve gG el+ld+++ pslP+d
  KKY22180.1 859 STVTDDEKDNNGLAISDFISPVMWILLGFFENQSLCSSFVEYGGGELILDIAAAPSLPFD 918
                 45566667788888********************************************97 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.16
      DUF913  272 seasssssssetkeeekssededvemeda...........eeetesesdeseeseeekeknslldyilnvakFLeall.snnslcreFve 349 
                  + +++++ + +t++e++ ++ +d++ ++a           ++++ + s+++e++  +++++++  y   + ++L+ ll s n+++ eFv+
  KKY22180.1 1986 DVEDKNPIQVSTDKEDNVDPASDTDSDSApidtpfprsqsSSPAPAASNKPEKAVFKADEHPIYLYRCFLLQCLTELLhSYNRTKIEFVS 2075
                  34444455555555555333333223333555566665444444455555566666677777999999999***9999667778899985 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.2
      DUF913  273 easssssssetkeeek.....................ssededvemed 299 
                  +++ss s+++++ ee+                     s++ded  +e+
  KKY22180.1 2296 SSASSVSEMDDEREETpdlfrnsalgmmdpnredmseSEDDED--DEH 2341
                  2222222222222222566666666666665555432111111..111 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.39
      DUF913  259 kllvedassasskseasssssssetkeeek..........ssededvemedaeeetesesdesees 314 
                  kl  e++ ++++++ +++           +          ++ +e++e e a           + +
  KKY22180.1 2773 KLEEEAR-KREEEERERE-----------RqermareeaeRKRKEEEEREAA-----------ARA 2815
                  1111111.1111111111...........11111111111111111111111...........111 PP

>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.2   0.1   2.7e-98   6.1e-95       2     306 ..    3656    3960 ..    3655    3961 .] 0.95

  Alignments for each domain:
  == domain 1  score: 318.2 bits;  conditional E-value: 2.7e-98
                  HHHHHHT-GGGSSEEESSTTSSSEEE-TTHHHHS.....HHHHHHHHHHHHHTT--BSS-B-HHHHHHHTT-.---TCHHHHH-HHHHHHHHHHH.. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT    2 llskelldpklglfeeesedsgtlypkpssseee.llklfeflGkvlGkaiyeeilldlpfsraflkfllgeekitledleeidpelakslkellsl 97  
                  +l++ +++p++ lf   ++d+ t++p++ s  ++ +l  f+f+G+++Gka+ye+++ld +fsra++k++lg + ++++d+e +d +++ksl ++l  
  KKY22180.1 3656 VLARGMFNPDYALFIPVASDRTTFHPNRLSGVNNeHLMFFKFIGRIIGKALYEGRVLDCHFSRAVYKCILG-KSVSIKDMETLDLDYYKSLVWML-- 3749
                  68899*********99999*********99877787789********************************.6**********************.. PP

                  HS-GGG...GT-BSEEEEE.TTEEEEEESSTTGGGSB--TTTHHHHHHHHHHHHHTGGGHHHHHHHHHHHHTTS-HHHHTTS-HHHHHHHHBCSSS. CS
                  xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT   98 esnteevedlaLtFtipen.agasatieLipnGanipVtnenkkeYiklyvnyllkksvekqleaflkGfsevipskalklfdaeelellisGedel 193 
                  e++ +++  +  tF+++++ +g+++ti+Li+nG nipVt+enk+eY++l+v+y+l  sv++qle+flkGf+++ip++++++f+++elellisG  + 
  KKY22180.1 3750 ENDITDI--ITETFSVETDdFGEAKTIDLIENGHNIPVTEENKQEYVQLVVEYRLTGSVNEQLEHFLKGFHDIIPAELISIFNEQELELLISGLPD- 3843
                  6666544..677*****99****************************************************************************7. PP

                  --HHHHHHTEEEETT--TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSS--TTCGGG-.....B--EEEEE-S..-TTS--EEEGGGTEEEE---S CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT  194 idvedlrrnteykggynaesetiewlweilkefspeekrlfLqFvTgssrlPlgGfael.....hpkftierkskedetrLPtahTCfnlLklpdYs 285 
                  idv+d+r+ntey+  y+a+s++i+w+w+++++f++ee++++LqFvTg+s++Pl+Gf+el      ++f i++    +++rLP++hTCfn+L+lp+Y+
  KKY22180.1 3844 IDVDDWRANTEYH-NYSASSQQIQWFWRAVRSFDKEEQAKLLQFVTGTSKVPLNGFKELegmngFSRFNIHKDY-GNKDRLPSSHTCFNQLDLPEYD 3938
                  ************5.5********************************************9999999******66.999******************* PP

                  SHHHHHHHHHHHHHHH.H--XX CS
                  xxxxxxxxxxxxxxxx.xxxxx RF
        HECT  286 skeilkekLltAieet.egFel 306 
                  s+++l+++L +A++ + e F++
  KKY22180.1 3939 SYDTLRQRLHMAMTTGsEYFGF 3960
                  **************99777876 PP

>> DUF908  Domain of Unknown Function (DUF908)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.4   0.7   1.2e-48   2.6e-45     169     356 ..     184     409 ..     113     411 .. 0.84
   2 ?   -2.6   0.8       1.2   2.8e+03     173     207 ..     638     671 ..     598     690 .. 0.56
   3 ?   -1.1   1.0      0.44     1e+03     176     252 ..    1533    1626 ..    1452    1628 .. 0.58
   4 ?   -4.6   1.4       5.2   1.2e+04     162     206 ..    1994    2033 ..    1898    2051 .. 0.53
   5 ?   -0.9   0.7      0.38   8.4e+02     170     210 ..    3125    3201 ..    3068    3239 .. 0.71
   6 ?   -2.7   1.3       1.3     3e+03     152     190 ..    3262    3308 ..    3243    3335 .. 0.52

  Alignments for each domain:
  == domain 1  score: 155.4 bits;  conditional E-value: 1.2e-48
      DUF908 169 i..........................ssspstPt...plrrssklgk.tssspsspaktstpskaaksqeglktfeipesevsskslyellakaveki 237
                 +                          ++ p tPt   plrrs+++g+  +  p+++ + s +++++++++g   + i+++e++++s++e++ak+++++
  KKY22180.1 184 SsdwmndcttvevvvekpaagdepafdNEIPDTPTrtsPLRRSTTMGSsVQGLPANDLSRSPKPAQTTPDTGTIKLTIGADEIRQSSVEEVVAKYIPEL 282
                 2334555556667777777777777885556666522278999999987335666655545555555666677799*********************** PP

      DUF908 238 PkesryellhririakalnssseeRqqllaiRllAitnlayihpesefqtkllkqdpd......lvyqLaeLihpe..esevprelqtaaleaLealar 328
                 P++++yell+++ + ka  +s+e+Rq  +ai llA++nl yi+pe+ f++k+l+++++      l++qLaeL+  +  +s++p+ lqt+a+ +L ala+
  KKY22180.1 283 PPSAHYELLNKVLVSKAILTSRETRQFRIAIQLLAVSNLSYIYPEHLFHSKVLQYESElpkrlqLISQLAELLARGslDSDLPVYLQTLAFTTLRALAK 381
                 ****************************************************************************888******************** PP

      DUF908 329 kkaklsdvlsaLnanvnhGiLlyvlRka 356
                 +ka+++d+l+aL++nvnhG+L++  Rk 
  KKY22180.1 382 HKARINDILTALSINVNHGVLMSATRKG 409
                 **************************95 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.2
      DUF908 173 pstPtplrrssklgk...ts...sspsspaktstpskaaks 207
                 p  Ptp+ ++s++++   +s   +        + +++++++
  KKY22180.1 638 PPRPTPVSEQSQQTEdesRSenaD-------MTMSDQDSDT 671
                 445666666666655322112220.......1111111111 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.44
      DUF908  176 Ptplrrssklgkts......................sspsspaktstpskaaksqeglktfeipesevssks.lyellakave..kiPkesryellh 247 
                   t++  +      +                      +sp +   +++ s++++++ ++  + i + e + ++   +l++ ++e  +   e  +el  
  KKY22180.1 1533 GTNTDST------DdsgpqmamsldnilnpgrptgeNSPPTR--PTEVSEPTTQARSAGFITIEDLEAQRTEiRSDLVEHCLEvlNTHYEVAFELSE 1621
                  2222222......02222233444555555555544333333..23333333334444499999999999997789999999955555566777777 PP

      DUF908  248 riria 252 
                   +r a
  KKY22180.1 1622 LVRAA 1626
                  66665 PP

  == domain 4  score: -4.6 bits;  conditional E-value: 5.2
      DUF908  162 eeaseslissspstPtplrrssklgkts..sspsspaktstpskaak 206 
                  + ++ ++++ +p+++t +         +  ++p   +++s+p+ aa+
  KKY22180.1 1994 QVSTDKEDNVDPASDTDSDS-------ApiDTPFPRSQSSSPAPAAS 2033
                  22222222222222222221.......01112222222222222222 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.38
      DUF908  170 ssspstPtplrrssklgkts....................................sspsspaktstpskaaksqeg 210 
                   ++++tP+pl+r+ ++++ +                                    +sp+s +k+++++k ++++ +
  KKY22180.1 3125 PTAQKTPQPLKRTLSMQPAQasnevtpimivqqclsaleyltsynphiapvflrelDSPASRSKSNKKGKGKETRAS 3201
                  56889********9999933355677788888899999999999999999999988666666555555554444433 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 1.3
      DUF908  152 eqkaesksskeeasesli....ssspstPtplrrssklgkts.........s 190 
                  e ++ ++ + ee+    +     +  +tP p+ + s+ g+++         s
  KKY22180.1 3262 E-QQLTSAAAEES----NagdtAMTEATPLPSTQVSEGGAHEstpvvdvagS 3308
                  1.11222222222....13444888999999998888887442333322221 PP

>> UBM  Ubiquitin binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   3.3   7.8e-13   1.7e-09       6      34 ..    2883    2911 ..    2878    2912 .. 0.88
   2 !   32.7   5.2   1.5e-11   3.3e-08       2      35 .]    2917    2950 ..    2916    2950 .. 0.93
   3 !   33.5   1.8   8.4e-12   1.9e-08       3      34 ..    2967    2998 ..    2965    2999 .. 0.87

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 7.8e-13
         UBM    6 pegiDpsFLaaLPpdLReEVLaqqdeeql 34  
                  +  iDp+FL+ LP+++ReEV++qq +eq+
  KKY22180.1 2883 DLAIDPEFLEELPEEIREEVIMQQYAEQR 2911
                  445*************************9 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 1.5e-11
         UBM    2 aapppegiDpsFLaaLPpdLReEVLaqqdeeqlr 35  
                  +++pp++i+ +FL+aLP+++ReE L+q+++e++r
  KKY22180.1 2917 QGQPPTEINSDFLDALPDEIREELLQQEAAERRR 2950
                  6788888*************************97 PP

  == domain 3  score: 33.5 bits;  conditional E-value: 8.4e-12
         UBM    3 apppegiDp.sFLaaLPpdLReEVLaqqdeeql 34  
                  a ++e +Dp sF+a+L+p+LR+ +La+q ee +
  KKY22180.1 2967 ARAEE-MDPdSFMASLDPSLRRSILADQPEEII 2998
                  55556.**********************99975 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.39   8.7e+02       8      32 ..     343     367 ..     343     370 .. 0.89
   2 ?   10.3   0.0   0.00032      0.71       1      37 [.    2256    2295 ..    2256    2297 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.39
                 HHHHHHHHHHHHHTTTBTSSTCCTT CS
        HAMP   8 rPLrrLaraarriaaGdldtrlpvs 32 
                 ++L+ +++ a+ +a+G ld++lpv+
  KKY22180.1 343 KRLQLISQLAELLARGSLDSDLPVY 367
                 5799999****************97 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00032
                  HHHHTTHHHHHHHHHHHHHHTTTBTSST....CCTTSSSHH CS
        HAMP    1 llarrilrPLrrLaraarriaaGdldtr....lpvsgrDEi 37  
                  +la++il+PL++La++a +++  + dt+    l  + +DEi
  KKY22180.1 2256 RLAKSILKPLEQLATTALQLSL-HSDTTiispLGQTEQDEI 2295
                  589****************983.222223343333566666 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   8.1e-05      0.18      13      29 ..    1422    1438 ..    1413    1441 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.1e-05
                  TS-HHHHHHHHHHTTTS CS
         UBA   13 GFdreevveALratgnN 29  
                  G+d++ ++eAL++++n+
  KKY22180.1 1422 GYDEALAREALFRCNNS 1438
                  9**************95 PP

>> TAF4  Transcription initiation factor TFIID component TAF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   6.1   8.4e-06     0.019     115     193 ..    2761    2828 ..    2661    2883 .. 0.66
   2 ?    0.1   1.5      0.25   5.6e+02      94     149 ..    2907    2971 ..    2900    2983 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.4e-06
        TAF4  115 vrkqLrelaqkekeeeekrqakRieereglekaakdrskgedeeekklkaketakevqkeedekarhraANatAlaavg 193 
                  v ++++e + ++k+eee+r++           ++++r+++ +e  ++++a+  +ke  ++e ++  + +A atA+aa+ 
  KKY22180.1 2761 VPEAIEETKARQKLEEEARKR-----------EEEERERERQERMAREEAERKRKEEEEREAAARATAEAEATAAAAAV 2828
                  334444555555555555555...........44444444444445555554444444455666667778888887776 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.25
        TAF4   94 lskhRrrgekskkrte........sltsdvrkqLrelaqkekeeeekrqa.kRieereglekaak 149 
                  ++++R ++ ++ +  +         l +++r++L + +  e+ ++e+  a +R+ e++g  +a++
  KKY22180.1 2907 YAEQRHQAQEQGQPPTeinsdfldALPDEIREELLQQEAAERRRRERDAArRRVTEADGPARAEE 2971
                  66677665444433225666666678889999999999999999998888556777777777666 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   9.0    0.0017       3.8     370     475 ..    2743    2844 ..    2718    2855 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0017
                  HHHHHHHHHHHHHHHHHHH-TTGGG---HHHHHT-S-HHHHHHHHHHHHHH.HHHHHHHHHHHHHHH--.......-------------S-SSSTTT CS
       NARP1  370 pfyvkaakgaievYlkledkpkakeeekeeaksaelseaerkklrkkakka.ekkaekeeaekaekekekkaaekkakkedeeakkededplgekLv 465 
                   ++ +  ++ i+  lk    p+a ee    ++ ++l+e+ rk+ ++   ++ +++ ++eeae+++ke+e+++a+++a++ + ea++++   + e+ +
  KKY22180.1 2743 GTFLEKTQRVINSVLKALV-PEAIEE---TKARQKLEEEARKREEEERERErQERMAREEAERKRKEEEEREAAARATA-EAEATAAAAAVNNEEAI 2834
                  5555555555555444332.222222...22234555555555554444443555566666555555554444333333.44444445556666666 PP

                  T-S-HHHHHH CS
       NARP1  466 kteepLeeAl 475 
                    +ep+++A+
  KKY22180.1 2835 DGDEPMQDAQ 2844
                  6666777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3961 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1731  (0.0965475); expected 358.6 (0.02)
Passed bias filter:                      799  (0.0445647); expected 358.6 (0.02)
Passed Vit filter:                       168  (0.00937029); expected 17.9 (0.001)
Passed Fwd filter:                        49  (0.002733); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 2.63u 0.34s 00:00:02.97 Elapsed: 00:00:00.71
# Mc/sec: 16882.68
//
Query:       KKY22181.1  [L=307]
Description: putative steroid alpha reductase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-28   99.8   0.1      2e-28   99.2   0.1    1.3  1  Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
    0.00042   19.9   0.1    0.00061   19.4   0.1    1.2  1  DUF1295     Protein of unknown function (DUF1295)
     0.0044   17.4   0.2     0.0086   16.5   0.2    1.6  1  PEMT        Phospholipid methyltransferase


Domain annotation for each model (and alignments):
>> Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.1   3.4e-32     2e-28       2     149 ..     155     306 ..     154     307 .] 0.91

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 3.4e-32
  Steroid_dh   2 kmpllivakavl.fcvlnGllqarylsy.yqpyaedylkkdrlllgivlfvlgmliniksdiiLrelrkegetkykiprgglFelvsapnyfgEilewi 98 
                 +mp ++++k+++ +++l Gl  a ++    +p a +  ++  l  giv++v+g+l n  s+ +L  lr +g +++ ip+g +F lv++pny++Eil w 
  KKY22181.1 155 TMPARNIFKNCAhYWILGGLNIAPWVYRpSAPTATQSPNTVLLYSGIVIYVIGELGNLSSHLTLKGLRSAGGKERGIPQGVFFRLVTCPNYMFEILAWF 253
                 89******************9999975515566777778788889****************************************************** PP

  Steroid_dh  99 gyalvt.kslaalaFalftvlnltvraaahhkwykkkf.ekYpksRkiliPfv 149
                 g  +v+  s+a l+  +++  ++ ++ +++ ++y+k+f +kY k+R  ++P +
  KKY22181.1 254 GMYFVSnLSWALLVMLVVSAGQMIIWGKKKERRYRKEFgDKYKKKRSTVLPGI 306
                 866655169999999999999******************************87 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1     1e-07   0.00061     125     197 ..     201     273 ..     177     298 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1e-07
     DUF1295 125 lalwlvgivlealaDqQlsafkkdpankgkvldsG.LwrysRHPNYfgealiWwglflialealeglealaiag 197
                 ++++++g +++  +   l+  ++    k + + +G ++r+   PNY++e+l W+g++ ++  +++ l +l++ +
  KKY22181.1 201 IVIYVIGELGNLSSHLTLKGLRSAGG-KERGIPQGvFFRLVTCPNYMFEILAWFGMYFVSNLSWALLVMLVVSA 273
                 55555555555555555555554443.223334442689999*****************999988876666655 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   1.4e-06    0.0086      41      95 ..     230     285 ..     195     295 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.4e-06
        PEMT  41 klvtsGiYrylnnPeyvgstlgflGlaLitgsaag.lllallvllvylialkfvEe 95 
                  + ++  +r++  P y++ +l+++G++++++  ++ l+++++++  ++i+ k  E+
  KKY22181.1 230 GIPQGVFFRLVTCPNYMFEILAWFGMYFVSNLSWAlLVMLVVSAGQMIIWGKKKER 285
                 45566679*********************998887355555555556666554554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2261.15
//
Query:       KKY22182.1  [L=138]
Description: putative f-box domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.24   11.1   0.7       0.31   10.8   0.7    1.1  1  Pex19     Pex19 protein family


Domain annotation for each model (and alignments):
>> Pex19  Pex19 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.7   1.7e-05      0.31     141     180 ..      96     134 ..      93     136 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.7e-05
       Pex19 141 evLyePlkelne...kfpewLeenkeklsaedlerYekQaeiv 180
                 evLy+ +kel++   kf  +L     +++   +++Y++Q+ ++
  KKY22182.1  96 EVLYNTMKELSNpkeKFCSYLS----EMDYGAISQYQEQYWVT 134
                 9*********765559*****9....67778889999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1033.00
//
Query:       KKY22183.1  [L=166]
Description: hypothetical protein UCRPC4_g03371 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.08   12.7   0.0       0.14   11.9   0.0    1.4  1  Thr_dehydrat_C  C-terminal regulatory domain of Threonine deh
      0.088   12.6   0.0       0.14   11.9   0.0    1.3  1  DUF3016         Protein of unknown function (DUF3016)
        0.1   13.1   0.1       0.16   12.5   0.1    1.2  1  DinB_2          DinB superfamily


Domain annotation for each model (and alignments):
>> Thr_dehydrat_C  C-terminal regulatory domain of Threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.4e-05      0.14      16      41 ..     102     126 ..      92     129 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.4e-05
                     XXXXXXXXXXXXXXXXXXXX.XXXXX CS
  Thr_dehydrat_C  16 efpeqpGaLkkFlellggrndiTlfe 41 
                     ++pe+p+ LkkFl+ + +r  + lf+
      KKY22183.1 102 DLPENPEELKKFLQHVRDRL-VALFQ 126
                     68****************99.98885 PP

>> DUF3016  Protein of unknown function (DUF3016)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.4e-05      0.14       2      47 ..      89     133 ..      88     137 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.4e-05
     DUF3016   2 evkvefadpekfrDvkesnesrerarervlaeLeealeklaekaLp 47 
                 +v+v+f++p  f+D+ e+ e+ +++ ++v ++L + +++ a + L+
  KKY22183.1  89 RVDVRFEEPRLFEDLPENPEELKKFLQHVRDRLVALFQRDAPA-LK 133
                 599************************************9987.66 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.6e-05      0.16      41     101 ..      64     139 ..      59     154 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.6e-05
      DinB_2  41 nveelllerlr................geeaprpgldpltppsaaealaylaevrarllallealtdadldrpltap 101
                 +++ +++e ++                + ++ +p+l ++ p +++e+++ l++vr+rl al+++ ++ +l    ++p
  KKY22183.1  64 DYQTFWVEGILshvvpytkikaenlrvDVRFEEPRLFEDLPENPEELKKFLQHVRDRLVALFQRDAP-ALKLGPPPP 139
                 67888888888666676666544443444444788888888*********************99333.444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1303.08
//
Query:       KKY22184.1  [L=702]
Description: hypothetical protein UCRPC4_g03372 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-48  163.6   1.7    5.6e-48  163.6   1.7    5.4  3  LIM_bind  LIM-domain binding protein


Domain annotation for each model (and alignments):
>> LIM_bind  LIM-domain binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -41.2  48.5         1   1.8e+04     151     189 ..     196     264 ..      94     337 .. 0.72
   2 !  163.6   1.7   3.1e-52   5.6e-48       1     241 []     340     555 ..     340     555 .. 0.91
   3 ?   -2.0   0.3      0.12   2.1e+03     188     204 ..     624     649 ..     578     676 .. 0.57

  Alignments for each domain:
  == domain 1  score: -41.2 bits;  conditional E-value: 1
    LIM_bind 151 kqllesa.....ssaspkvskkvskrqg.ifgklsskepaeepp........................e 189
                 +q++ ++     ++++++  ++++++++ + +++ +++p + p+                        +
  KKY22184.1 196 QQAFAVQqaalhQQQAAQARNNQMMQEQnATTQAPQPQPTPAPQaapppqptpqpqvsqppsaqppqqQ 264
                 333333366666555555555666665533333333333333335555655555555544444443332 PP

  == domain 2  score: 163.6 bits;  conditional E-value: 3.1e-52
    LIM_bind   1 lrllelierlsnrs...nedsdieyWrkfvaefFspdavlrltlkldeqekepkqFeittpllPryfrtlfesgvkslqlildgareqvlsngsivlec 96 
                 lr+ +++++ls++s   ++ s+++ W++fv+ fF+p++vlr+ l++ ++ ++ k++++++++lPr++ ++f+sg+k + ++l++are  l++g++++e 
  KKY22184.1 340 LRVIQFCDHLSQSSsdtEKSSKLDTWQQFVSMFFTPEGVLRQQLWN-SRDSGDKRYQLSVAALPRFYWSHFTSGIKHMDIHLERARESDLPSGGHMVE- 436
                 79********************************************.554799******************************************888. PP

    LIM_bind  97 dkatfvytyedgsrvvlegqlrvlfdadlkIewlefavrsheeliprsalekklkqllesassaspkvskkvskrqgifgklsskepaeeppeavkqlp 195
                  ++t++y++e++sr+ ++g+l++++d + kIe l++++r+h+e++pr  +e  +++  e  +++sp+++kk ++ q+                   q  
  KKY22184.1 437 GRTTVSYVFENDSRLISFGNLKAHLDVHSKIEILDLSTRKHVEYLPRPLVEASVEKSPE--QKSSPEINKKLKRAQK-------------------QAA 514
                 6899***********************************************99877655..8999999998766644...................344 PP

    LIM_bind 196 sspvnsfGitesvmrfLeiaevmssmkdLmsfskknnilsPleaLk 241
                 ++  ++  +++s     + ae+m+sm+ L+ +++ n++l P eaL+
  KKY22184.1 515 QAAAATVTLPPS-----RTAETMTSMTMLFAYCQDNPNLRPQEALE 555
                 444556666666.....679************************96 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.12
    LIM_bind 188 p......eavkqlpsspvn...sfGi 204
                 +       +++q+ ++  n   s+G 
  KKY22184.1 624 SampgpvAMAHQQSQQGSNlsgSQGT 649
                 23455554444444444442223333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2078  (0.115902); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.23u 0.31s 00:00:01.54 Elapsed: 00:00:00.53
# Mc/sec: 3993.33
//
Query:       KKY22185.1  [L=462]
Description: putative aaa family atpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.9e-167  555.2   0.0     8e-167  554.8   0.0    1.2  1  TIP49            TIP49 P-loop domain
    2.1e-22   79.0   0.1    6.2e-22   77.5   0.1    1.9  1  TIP49_C          TIP49 AAA-lid domain
    2.3e-12   47.5   0.1    4.5e-08   33.6   0.1    2.5  2  AAA              ATPase family associated with various cellul
      1e-09   38.4   0.1    2.2e-06   27.5   0.0    2.4  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    4.3e-05   24.0   0.1    0.00037   20.9   0.1    2.2  1  AAA_16           AAA ATPase domain
      5e-05   23.6   0.1       0.48   10.7   0.0    2.5  2  AAA_22           AAA domain
    0.00015   22.1   0.3       0.05   13.9   0.1    2.6  2  AAA_19           AAA domain
    0.00032   20.5   0.1        0.2   11.3   0.0    2.4  2  Sigma54_activat  Sigma-54 interaction domain
    0.00095   19.2   0.1       0.15   12.0   0.0    2.5  2  AAA_5            AAA domain (dynein-related subfamily)
     0.0043   16.4   0.1       0.01   15.1   0.1    1.6  1  Zeta_toxin       Zeta toxin
     0.0048   17.2   0.1     0.0087   16.3   0.1    1.4  1  AAA_28           AAA domain
  ------ inclusion threshold ------
      0.013   14.9   0.0       0.51    9.7   0.0    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.019   14.6   0.0      0.039   13.5   0.0    1.5  1  AAA_25           AAA domain
      0.021   14.2   0.0      0.041   13.2   0.0    1.5  1  DnaB_C           DnaB-like helicase C terminal domain
       0.03   13.8   0.1       0.11   11.9   0.0    1.9  2  AAA_7            P-loop containing dynein motor region
      0.036   13.4   0.1        0.1   11.9   0.0    1.8  2  ATPase           KaiC
      0.042   13.1   0.0       0.06   12.6   0.0    1.2  1  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.056   13.2   0.0        0.1   12.3   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
      0.057   13.1   0.1       0.68    9.6   0.1    2.3  2  AAA_30           AAA domain
      0.061   13.9   0.0       0.19   12.3   0.0    1.9  1  AAA_18           AAA domain


Domain annotation for each model (and alignments):
>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  554.8   0.0    9e-170    8e-167       1     349 [.      15     368 ..      15     370 .. 0.99

  Alignments for each domain:
  == domain 1  score: 554.8 bits;  conditional E-value: 9e-170
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49   1 rislhshikgLGldedgeaekeeeglvGqkkareaagvivelikekklaGravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevl 99 
                 r+++h+hikgLGl +dg ae++ +g+vGq++area+gv+v+li++kk++GravLlaG +gtGktala+a+s+elg++vpf+ ++gsevys+evkkte+l
  KKY22185.1  15 RTAAHTHIKGLGLRSDGVAETSGSGFVGQVEAREACGVVVDLIRAKKMSGRAVLLAGGPGTGKTALALAVSQELGTKVPFCPINGSEVYSTEVKKTEAL 113
                 689************************************************************************************************ PP

                 XXXXXXXXXXXXXX-S-EEEEEEEEEEE...-SSS-...TTS--EEEEEE-SS-EEEEEE-HHHHHHHHHHT--TT-EEEEETTT--EEE-SSS-SS-- CS
       TIP49 100 tqalrksigvrikeekevleGevveleveeaenpls.kekkikevkitlktakeekklklgskiaeellkekvkegDviviekesGkvkklGrsearak 197
                 ++++r++ig+r++e+kev+eGev+el++eeaenpl+  +++i++  it+k++k++kkl+l+++i+e+l+ke+v++gDvi+ie+++G++k++Grs+a+a+
  KKY22185.1 114 MENFRRAIGLRVRETKEVYEGEVTELQPEEAENPLGgFGRTISHLLITIKSQKGTKKLRLDPSIYEALQKERVTVGDVIYIEANTGACKRVGRSDAYAT 212
                 ************************************99************************************************************* PP

                 ----S--------S---S----XXXXXXXXXXXXXXXXX...XXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 198 efDiekdefvelPkGevekkkevvqevtLhdlDvanarp...qdllslllqllkskkteiteklreeinkkvakyveegkaeivpGvlfiDevhmlDie 293
                 efD+e++e+v++PkGev+kkke+vq+vtLhdlD+anarp   qd++s++ ql+k+kkteit+klr eink+v++y+++g+ae+vpGvlfiDevhmlDie
  KKY22185.1 213 EFDLEAEEYVPIPKGEVHKKKEIVQDVTLHDLDIANARPqggQDVMSMMGQLMKPKKTEITDKLRGEINKVVSRYIDQGIAELVPGVLFIDEVHMLDIE 311
                 ***************************************9999******************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 294 cfsylnraleselaPivilatnrgiakirGt.diisphGipvDlldrlliiktekyt 349
                 cf+ylnrales++aPivila+nrg + irGt di+++hGip Dll rllii t++y+
  KKY22185.1 312 CFTYLNRALESPIAPIVILASNRGHTLIRGTsDIHAAHGIPPDLLARLLIIPTHPYN 368
                 *******************************9************************8 PP

>> TIP49_C  TIP49 AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.1   6.9e-25   6.2e-22       1      66 []     375     440 ..     375     440 .. 0.99

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 6.9e-25
     TIP49_C   1 IlkiRakeEgvkldeeAldlLakigtetSLRYaiqLltpasilakkrkkkevevedveeveeLFlD 66 
                 I++ Rak Eg++l+++Ald  a+ gt+ SLRYa+qLltpasilak++++ +vev dvee+  LF+D
  KKY22185.1 375 IVRTRAKIEGLNLSDQALDAVAQQGTKVSLRYALQLLTPASILAKVNGRSTVEVVDVEECLGLFID 440
                 89***************************************************************9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.1     5e-11   4.5e-08       1      49 [.      67     117 ..      67     170 .. 0.88
   2 !   11.5   0.0   0.00033       0.3      26      70 ..     264     308 ..     246     341 .. 0.75

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 5e-11
                 EEEESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSSSTTHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg..vefleisgsellskyvgesekkirel 49 
                 vll G pGtGKT+la av +elg  v+f+ i+gse+ s  v+++e+ ++++
  KKY22185.1  67 VLLAGGPGTGKTALALAVSQELGtkVPFCPINGSEVYSTEVKKTEALMENF 117
                 79*******************954599**********99999999887765 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00033
                 EEEEETTTCSSSSTTHHHHHHHHHHHH.HHHTSTSEEEEEETGGGH CS
         AAA  26 fleisgsellskyvgesekkirelfke.akekakpsilfiDEidal 70 
                 +++ + +e+++k+ ge +k ++ ++++ + e   p +lfiDE++ l
  KKY22185.1 264 LMKPKKTEITDKLRGEINKVVSRYIDQgIAELV-PGVLFIDEVHML 308
                 666678899999*************99555555.9*********88 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   2.5e-09   2.2e-06       8      61 ..      39      92 ..      34     102 .. 0.94
   2 !    8.2   0.0    0.0022       1.9      86     117 ..     298     329 ..     288     339 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 2.5e-09
      RuvB_N  8 eyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvkl 61
                 ++gq + +e   ++++  ++++ +   vll+G PG Gkt+la  +++elg+k+
  KKY22185.1 39 GFVGQVEAREACGVVVDLIRAKKMSGRAVLLAGGPGTGKTALALAVSQELGTKV 92
                69************************************************9986 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0022
      RuvB_N  86 dvlfideihrlsraveevlysamedfrldivi 117
                  vlfide+h l+ +   +l  a+e     ivi
  KKY22185.1 298 GVLFIDEVHMLDIECFTYLNRALESPIAPIVI 329
                 59*********************988777777 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   4.2e-07   0.00037      19     145 ..      59     306 ..      52     330 .. 0.54

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 4.2e-07
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekdggif.lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala.......... 106
                 +++ ++++vll G +G+GK++l+ ++ ++l ++  ++ ++g  + +++     al + + r + +    +e+++   ++  e  +e+++          
  KKY22185.1  59 AKKMSGRAVLLAGGPGTGKTALALAVSQELGTKVPFCpINGSEVYSTEVKKTEALMENF-R-RAIGLRVRETKEVYEGEVTELQPEEAEnplggfgrti 155
                 4444559**************************44446666666663333223333333.2.3333333333333333333333333333334444444 PP

      AAA_16 107 ................................................................................................... 106
                                                                                                                    
  KKY22185.1 156 shllitiksqkgtkklrldpsiyealqkervtvgdviyieantgackrvgrsdayatefdleaeeyvpipkgevhkkkeivqdvtlhdldianarpqgg 254
                 444444444444444444444444444666666666666666666666666666666666666666666666666666666666666665555555555 PP

      AAA_16 107 .............avpelagaeasrllellkrll.allsrderplvlvlDdlq 145
                                 e++++++  ++ +++r + + +++   p vl++D+++
  KKY22185.1 255 qdvmsmmgqlmkpKKTEITDKLRGEINKVVSRYIdQGIAE-LVPGVLFIDEVH 306
                 5555555554444333333333344555555555333333.445666666666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00056       0.5       4      70 ..      63     127 ..      59     194 .. 0.72
   2 !   10.7   0.0   0.00053      0.48      73     117 ..     271     321 ..     201     347 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00056
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee......erpevvfvtlpsstsskdllrellralglelka 70 
                 + + +++ G +GtGKT l+  + ++l       +      +++   +v+ ++ ++ + l++++ ra+gl+  +
  KKY22185.1  63 SGRAVLLAGGPGTGKTALALAVSQELGT-----KvpfcpiNGS---EVYSTEVKKTEALMENFRRAIGLRVRE 127
                 5678899****************99943.....1222333333...444444445556666666666666555 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00053
      AAA_22  73 lsseellealeqalrarav.......ielliiDEaqhlrseealeeLrslln 117
                   ++ l+  +++ ++++ +       +++l iDE++ l   e++++L + l+
  KKY22185.1 271 EITDKLRGEINKVVSRYIDqgiaelvPGVLFIDEVHML-DIECFTYLNRALE 321
                 344555555555555555555556667***********.9999999955444 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   5.6e-05      0.05       7      31 ..      61      85 ..      56     120 .. 0.86
   2 ?    5.9   0.0     0.017        15     100     125 ..     295     320 ..     152     330 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.6e-05
      AAA_19  7 alkekvllvtaGpGtGKTrvlkhiv 31
                +++ + +l+ +GpGtGKT +  ++ 
  KKY22185.1 61 KMSGRAVLLAGGPGTGKTALALAVS 85
                678899************9866655 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.017
      AAA_19 100 lqeeellivDEfqdvd.elqyrLlkal 125
                 l    +l++DE+ ++d e    L +al
  KKY22185.1 295 L-VPGVLFIDEVHMLDiECFTYLNRAL 320
                 2.3449**********55555555554 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00022       0.2      11      61 ..      53     102 ..      44     112 .. 0.79
   2 !    6.5   0.0    0.0071       6.4      94     119 ..     297     322 ..     289     327 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00022
                      HHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS CS
  Sigma54_activat  11 lleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaai 61 
                      +++ i++   +   vl+ G  GtGK+ la a+ ++   ++ pf  +n +++
       KKY22185.1  53 VVDLIRAKKMSGRAVLLAGGPGTGKTALALAVSQELG-TKVPFCPINGSEV 102
                      56666777777799****************9988766.6788999987765 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0071
                      TSEEEEETGGGS-HHHHHHHHHHHHH CS
  Sigma54_activat  94 gGtlfLDeigelplelQekLlrvlqe 119
                       G+lf+De++ l++e+ + L r+l++
       KKY22185.1 297 PGVLFIDEVHMLDIECFTYLNRALES 322
                      59**************9999999985 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00017      0.15       2      27 ..      67      92 ..      66     122 .. 0.83
   2 ?    4.5   0.0     0.035        31      66      90 ..     297     321 ..     265     329 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00017
                EEEE--SSSSHHHHHHHGGGGBS--E CS
       AAA_5  2 vlLvGppGtgKselaerlaaalnrev 27
                vlL G pGtgK+ la  +++ l+++v
  KKY22185.1 67 VLLAGGPGTGKTALALAVSQELGTKV 92
                89*****************9995544 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.035
                 -SEEEEESGGG--HHHHHHHHHHHH CS
       AAA_5  66 geilvlDEveraesevlnsLlslle 90 
                 + +l++DEv++++ e +  L++ le
  KKY22185.1 297 PGVLFIDEVHMLDIECFTYLNRALE 321
                 679******************9998 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.1e-05      0.01      18      43 ..      66      91 ..      57     104 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
  Zeta_toxin 18 lillgGqpGAGKselaellkdelerq 43
                ++ll+G+pG GK++la ++ +el+++
  KKY22185.1 66 AVLLAGGPGTGKTALALAVSQELGTK 91
                89*******************99654 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   9.7e-06    0.0087       2      60 ..      67     126 ..      66     144 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 9.7e-06
      AAA_28   2 ivitGgestGKTtlleaLaar...gypvvpEaareileeklakgedalpwv.edllafaervl 60 
                 + + Gg++tGKT l+ a +++   ++p  p  + e+++ + +k+e  l +  ++  a+  rv 
  KKY22185.1  67 VLLAGGPGTGKTALALAVSQElgtKVPFCPINGSEVYSTEVKKTEA-LMENfRR--AIGLRVR 126
                 7899***************9885556677999****9999999886.5554244..4444433 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00057      0.51      22      48 ..      64      90 ..      40     120 .. 0.74
   2 ?    2.9   0.0     0.068        61     107     132 ..     297     322 ..     264     336 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00057
  Mg_chelatase 22 gHnlllvGppGsGKtmlakrlpsllpp 48
                  g  +ll+G pG+GKt la ++++ l  
    KKY22185.1 64 GRAVLLAGGPGTGKTALALAVSQELGT 90
                  5679**************988776655 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.068
  Mg_chelatase 107 nGvLfLDElpefkrkvlevLRePled 132
                    GvLf+DE+  ++ + +  L + le+
    KKY22185.1 297 PGVLFIDEVHMLDIECFTYLNRALES 322
                   6*********9999999999998887 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.3e-05     0.039      33      65 ..      64      96 ..      55     140 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.3e-05
      AAA_25 33 gelallaGapgtGKttlaldlalavatGkpwlg 65
                g  +llaG pgtGKt+lal ++ ++ t  p+  
  KKY22185.1 64 GRAVLLAGGPGTGKTALALAVSQELGTKVPFCP 96
                7789***************99998888888754 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.5e-05     0.041      19      86 ..      64     138 ..      55     194 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.5e-05
                 TXEEEEEEXTTSSHHHHHHHHHHHHHHCSTS.E...EEEEESSSXHHHHHHHHHHHHHTXX...HHHHHHTTSXH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x...xxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx RF
      DnaB_C  19 gdliiiAarpsmGktalalniaenaavkekl.p...vavfslemsaeqlvqRllsseaeid...skklrtgklke 86 
                 g  +++A+ p++Gktalal + ++  +k    p     v+s e ++++ ++  +    +++   +k++++g+++e
  KKY22185.1  64 GRAVLLAGGPGTGKTALALAVSQELGTKVPFcPingSEVYSTEVKKTEALMENFRRAIGLRvreTKEVYEGEVTE 138
                 66789*****************99887554322334889999999887766555544443311244555565544 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00013      0.11      32      83 ..      63     115 ..      53     120 .. 0.74
   2 ?   -1.6   0.0       1.9   1.7e+03     103     116 ..     299     312 ..     297     315 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkldkekylsltinfs..aqtsanqlqdiie 83 
                 +++ vll G  GtGKt+++  + ++l  +k+ +  in s  ++t+ +++  ++e
  KKY22185.1  63 SGRAVLLAGGPGTGKTALALAVSQELG-TKVPFCPINGSevYSTEVKKTEALME 115
                 6789*****************999999.55555555555114566666666655 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.9
       AAA_7 103 vvFvDDlnmpakek 116
                 v+F+D+++m   e 
  KKY22185.1 299 VLFIDEVHMLDIEC 312
                 79*******98876 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012       0.1      18      37 ..      63      82 ..      55     132 .. 0.91
   2 ?   -2.2   0.0       2.4   2.2e+03      99     128 ..     275     305 ..     230     314 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
      ATPase 18 egrvvlitGepGtGKtifal 37
                +gr+vl++G+pGtGKt +al
  KKY22185.1 63 SGRAVLLAGGPGTGKTALAL 82
                689*************9986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.4
      ATPase  99 kdkedlee.lieelaeaikeikakrvviDsi 128
                 k + ++++ +++ + + i+e+    + iD +
  KKY22185.1 275 KLRGEINKvVSRYIDQGIAELVPGVLFIDEV 305
                 2222222202233444444444455555555 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.7e-05      0.06       3      51 ..      66     121 ..      64     144 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.7e-05
     DUF2075   3 vvlVtGvaGtGKtvvllnllael.......eddeeertavylsvNhplvlvlreal 51 
                  vl  G++GtGKt ++l++  el         + +e +++ + + ++l++  r+a+
  KKY22185.1  66 AVLLAGGPGTGKTALALAVSQELgtkvpfcPINGSEVYSTEVKKTEALMENFRRAI 121
                 57889***************999666655533334445555555555555555555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00011       0.1      48      71 ..      65      88 ..      53     116 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
   IstB_IS21 48 enivllGpsGvGKshlaialgvea 71
                 +++l G++G+GK+ la a+++e 
  KKY22185.1 65 RAVLLAGGPGTGKTALALAVSQEL 88
                5789***************99874 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00076      0.68      12      38 ..      59      84 ..      54     103 .. 0.79
   2 ?    0.7   0.0      0.42   3.8e+02      90     114 ..     298     322 ..     268     332 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00076
      AAA_30 12 alltsgdrvavltGpAGtGKttalkal 38
                a  +sg+  ++l G++GtGKt +  a+
  KKY22185.1 59 AKKMSGR-AVLLAGGPGTGKTALALAV 84
                5556665.999**********976655 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.42
      AAA_30  90 tllivDEagmvdtkqlaallkaaek 114
                  +l +DE+ m+d++ ++ l +a+e+
  KKY22185.1 298 GVLFIDEVHMLDIECFTYLNRALES 322
                 4889********9999888887766 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00021      0.19       1      25 [.      67     100 ..      67     164 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00021
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.........g 25 
                 +ll+G pG+GKt la ++s++lg          +
  KKY22185.1  67 VLLAGGPGTGKTALALAVSQELGTkvpfcpingS 100
                 79****************9999555666666653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.65u 0.35s 00:00:01.00 Elapsed: 00:00:00.52
# Mc/sec: 2663.92
//
Query:       KKY22186.1  [L=563]
Description: putative rna polymerase ii transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-20   71.5   0.6    1.4e-19   70.2   0.1    2.0  2  PH_TFIIH  TFIIH p62 subunit, N-terminal domain
    3.7e-11   42.9   8.5    8.8e-07   28.8   0.2    3.7  3  BSD       BSD domain


Domain annotation for each model (and alignments):
>> PH_TFIIH  TFIIH p62 subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.1   1.5e-23   1.4e-19       2      86 ..       6      91 ..       5      92 .. 0.95
   2 ?   -3.0   0.0       1.1   9.8e+03      45      56 ..     290     301 ..     280     312 .. 0.64

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 1.5e-23
    PH_TFIIH  2 ykKkdGtLtlte..krleWtpdasssapsvsiplseIknlqispagsaKvmLklvlkedkseeesytFtFtngsearkerdavkdlL 86
                ykK+ G+L l    + l+W+p++++++  + +++s+I+nlq++pa s+K+mLk++++ d++e ++ytFtF + s+ar+++d++k  L
  KKY22186.1  6 YKKQVGILKLIAakSLLTWIPKDGQNEGPILLQVSNISNLQQTPAASSKIMLKICYSVDQAETVTYTFTFIT-SDAREQADSIKSSL 91
                9*********999899*****888899******************************9977***********.89*********998 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.1
    PH_TFIIH  45 gsaKvmLklvlk 56 
                 +++ v+L+l+ +
  KKY22186.1 290 QQQAVQLQLTKN 301
                 445566666655 PP

>> BSD  BSD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.5   5.4e-07    0.0048       3      51 ..     111     164 ..     109     171 .. 0.90
   2 !   28.8   0.2   9.8e-11   8.8e-07       9      55 ..     198     243 ..     193     245 .. 0.92
   3 ?   -1.1   0.2      0.22   1.9e+03      39      46 ..     462     469 ..     462     470 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.4e-07
         BSD   3 nkfkldkteeiaqsllkedpeLrklynel.......VPskvseeqFWsrYfyllra 51 
                 +++    ++++++ +l+ dp+L+k+++          +     +qFWs + +llr 
  KKY22186.1 111 SQLL--QDDKLQKQVLTADPALQKTFTTSmamrsseTSAIRAASQFWSSRLHLLRE 164
                 5666..899********************9*999999999999***********97 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 9.8e-11
         BSD   9 kteeiaqsllkedpeLrklynelVPskvseeqFWsrYfyllrahaie 55 
                 +t+e+ q++ +++p +++++n  VP  ++e +FWsr+f++++ ++++
  KKY22186.1 198 ITKEQVQLIYNQYPIVEQIHNCEVPP-LKELEFWSRFFQSRLYKRLK 243
                 899***********************.*************9887765 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.22
         BSD  39 eqFWsrYf 46 
                 +qFWs + 
  KKY22186.1 462 KQFWSAFL 469
                 69***985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.51
# Mc/sec: 3338.22
//
Query:       KKY22187.1  [L=203]
Description: putative 50s ribosomal protein l24 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-15   56.3   0.8    5.4e-15   55.3   0.8    1.5  1  Ribosomal_L28  Ribosomal L28 family


Domain annotation for each model (and alignments):
>> Ribosomal_L28  Ribosomal L28 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.8     3e-19   5.4e-15       5      59 ..      19      76 ..      16      77 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 3e-19
                   TT-.-----------S-....-SSS-BTTEEEEEEEE.TTTEEEEEEEEHHHHHH--. CS
  Ribosomal_L28  5 ltG.kkpqfGnnvshskn..kTkRtwkPNlqkvrlwseelgrkvrikvstkcLRtidk 59
                   l+G +++q+Gn++s+ kn  kT+R+wkP ++   l se+lg++ +i+v+ +cLRti+k
     KKY22187.1 19 LYGgRTVQYGNKISKGKNegKTRRRWKPHVKLADLKSEALGKTLTIRVTYACLRTIRK 76
                   6777************88889***********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.51
# Mc/sec: 1202.83
//
Query:       KKY22273.1  [L=312]
Description: hypothetical protein UCRPC4_g03322 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.41    9.2   7.9       0.51    8.9   7.9    1.0  1  Hamartin  Hamartin protein


Domain annotation for each model (and alignments):
>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   7.9   2.9e-05      0.51     333     439 ..     189     297 ..     145     308 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 2.9e-05
    Hamartin 333 svcgmttppssp.givptte.lelsssasllsskvsstpeaag.katpetTPakssrkl..ppslsesavv.valpassrksspprkdeksesskpdls 425
                  v +m     s+  +vp+t+ + ++ s+s ls    s+p++ +  atp++TPa+++  +   p+++ s+   ++ pas+ +++p +     + + ++++
  KKY22273.1 189 WVRAMVQRVRSRvHTVPATQpPASAASSSPLS----SPPASIVsAATPAATPAATPAATpdVPTSVASTSPlSSPPASTASAAPADDIAADSLEVSSVA 283
                 55566666666656777766555555555444....333333213455555555555444444444444441555555555555555554477788888 PP

    Hamartin 426 kqeevenekelees 439
                 + ++v++++ ++++
  KKY22273.1 284 SGNTVSSDEDVHNA 297
                 88777666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.35s 00:00:00.87 Elapsed: 00:00:00.50
# Mc/sec: 1883.89
//
Query:       KKY22274.1  [L=322]
Description: hypothetical protein UCRPC4_g03323 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-08   35.2   0.1    1.7e-06   28.7   0.1    2.6  1  Methyltransf_25  Methyltransferase domain
    8.2e-08   32.3   0.0    1.5e-07   31.4   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
    1.7e-07   31.2   0.0      3e-07   30.3   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
    6.7e-06   26.8   0.0    1.8e-05   25.4   0.0    1.7  1  Methyltransf_12  Methyltransferase domain
    2.5e-05   24.8   0.2    0.00025   21.7   0.2    2.3  1  Methyltransf_11  Methyltransferase domain
     0.0001   21.7   0.0     0.0043   16.4   0.0    2.2  1  CMAS             Mycolic acid cyclopropane synthetase
     0.0013   18.5   0.0     0.0027   17.4   0.0    1.5  1  GCD14            tRNA methyltransferase complex GCD14 subunit
     0.0023   17.3   0.0     0.0063   15.9   0.0    1.7  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.007   16.1   0.0      0.018   14.8   0.0    1.6  2  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   8.4e-10   1.7e-06       1      97 []      60     179 ..      60     179 .. 0.70

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 8.4e-10
                      EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTT...............TEEEEESBCCGBS.......SSTTTEEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraeeegl...............nvefvqgdaedlp.......fedgsfDlvvss 71 
                      vLdlG+GtG +++a+ +++g  + v +vDis  ml+ a ++   +++               +v  v+  ++ +p        + + fD +++ 
       KKY22274.1  60 VLDLGTGTGAVARAADRAVGpLGFVAAVDISMPMLQVAFAKGGWANVgfgyldahglqneigEVATVENFVNIMPsdrrhrfVDFRGFDRILAL 153
                      9******************6699************99986665543333444333223222333333322222345555553355689999997 PP

                      STGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  72 galhhlsdedlekalkeiarvLkpgG 97 
                      g ++ ++ ++++++l+++a++L pgG
       KKY22274.1 154 GLYNDIEVAQRPAVLRRWASLLAPGG 179
                      667779999999************99 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   7.4e-11   1.5e-07      15     156 ..      51     229 ..      34     232 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 7.4e-11
  Methyltransf_23  15 rllpklraggrvLdiGcGtGillevl.rengf..svtgvDlspeaveiae....................................kakkaqkd 69 
                      +++  l++g+ vLd+G+GtG +++ + r+ g    v++vD+s  + + a                                     +++  +++
       KKY22274.1  51 KAG--LQPGMFVLDLGTGTGAVARAAdRAVGPlgFVAAVDISMPMLQVAFakggwanvgfgyldahglqneigevatvenfvnimpSDRRHRFV 142
                      333..788999***************77778887899*****8877766699999999999999999999999999988888888888888888 PP

  Methyltransf_23  70 qfdeqeaaepqgkfdlIvlrevlehvp..dppellrqiatllkpgGylllse.plasl......kedrllldwlylvpagrhisffsarslkel 154
                       f         + fd I +  + + ++    p++lr+ a+ll+pgG+l+ +  pl ++        + + ++++++ +a + i +  a+s+ ++
       KKY22274.1 143 DF---------RGFDRILALGLYNDIEvaQRPAVLRRWASLLAPGGVLVYESfPLTRDlatvvfRDLTRQHEYAWPGTAKTRIWLAAAESFDRA 227
                      88.........9***************76699******************99546666566665455555667888888899999999999988 PP

  Methyltransf_23 155 le 156
                      ++
       KKY22274.1 228 FQ 229
                      87 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.5e-10     3e-07       3     120 ..      56     198 ..      54     238 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.5e-10
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklled......................ek 74 
                       g+ vlDlG+GtG+ + ++ + +gp + v  +Dis  ++++A +   k g  nv F   d++ l++ + +                      + 
       KKY22274.1  56 PGMFVLDLGTGTGAVARAADRAVGPLGFVAAVDISMPMLQVAFA---KGGWANVGFGYLDAHGLQNEIGEvatvenfvnimpsdrrhrfvdfRG 146
                      5788**************************************99...89999999999999999977666789998888888888888888888 PP

  Methyltransf_31  75 fDlilsnevl..naladpdkileeiervlkpggilliedprllaelp....a 120
                      fD il+ ++     +a  +++l++  ++l pgg+l+ e++ l ++l+    +
       KKY22274.1 147 FDRILALGLYndIEVAQRPAVLRRWASLLAPGGVLVYESFPLTRDLAtvvfR 198
                      88888877778888899*********************99977777654443 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   8.9e-09   1.8e-05       1      99 []      61     181 ..      61     181 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 8.9e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieyt.gvDispsaiedakeklakrennnnnnvelealdlldldgg.........................ssfD 68 
                      L++G+GtG+++ra  ++  ++ ++ +vDis  ++     + a+ +   ++nv +  ld++ l+ +                           fD
       KKY22274.1  61 LDLGTGTGAVARAADRAVGPLGFVaAVDISMPML-----QVAFAK-GGWANVGFGYLDAHGLQNEigevatvenfvnimpsdrrhrfvdfRGFD 148
                      8*****************9999988*********.....444444.47778888888887777778889999********************** PP

  Methyltransf_12  69 lvvasnvlhhl..kdirevldnirklLkpgGrl 99 
                       ++a+++ + +  +++ +vl++ ++lL+pgG+l
       KKY22274.1 149 RILALGLYNDIevAQRPAVLRRWASLLAPGGVL 181
                      ***********989999**************97 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.2   1.2e-07   0.00025       1      95 [.      61     182 ..      61     183 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.2e-07
                      EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-......................EEEETTEECCCTSS-T.T-EEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg...arvvgvDlskemlklakekaseegl......................kvefvvadaeklpfed.nsfDlvvss 68 
                      Ld+G+GtG++a+a  +++   + v +vD+s  ml++a +k+  +++                       v+++ +d ++  f d   fD +++ 
       KKY22274.1  61 LDLGTGTGAVARAADRAVgplGFVAAVDISMPMLQVAFAKGGWANVgfgyldahglqneigevatvenFVNIMPSDRRH-RFVDfRGFDRILAL 153
                      8**************777899****************777777765445445554444444444444444446666665.45554669999999 PP

                      S-CCC-..CCHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11  69 evlhhv..edpekalkeiaRvLkpgGllv 95 
                         + +  +++ ++l+ +a +L pgG+lv
       KKY22274.1 154 GLYNDIevAQRPAVLRRWASLLAPGGVLV 182
                      999999888999**************997 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.1e-06    0.0043      53      83 ..      47      77 ..      41     216 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.1e-06
                HHHTTTT--TT-EEEEES-TTSHHHHHHHHH CS
        CMAS 53 lileklelkpGmtlLdiGcGWGslvrraver 83
                +++ k++l+pGm +Ld+G+G G+++r a + 
  KKY22274.1 47 TLVSKAGLQPGMFVLDLGTGTGAVARAADRA 77
                5789*******************99877554 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.4e-06    0.0027      28      73 ..      44      89 ..      37     100 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.4e-06
       GCD14 28 DisliimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfef 73
                + ++++ k  l+pG  v++ GtG+g+++ a  r+v+P+G + +++ 
  KKY22274.1 44 EAATLVSKAGLQPGMFVLDLGTGTGAVARAADRAVGPLGFVAAVDI 89
                5678889999*****************************9998875 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.2e-06    0.0063      43      91 ..      52     100 ..      39     126 .. 0.84
   2 ?   -2.7   0.0       1.5   2.9e+03     129     150 ..     161     182 ..     142     187 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.2e-06
                      --S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHH CS
  Ubie_methyltran  43 vavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekk 91 
                       + ++g  vlD+ +Gtg +a +  ++vg  g v  +Di+  mL+v+ +k
       KKY22274.1  52 AGLQPGMFVLDLGTGTGAVARAADRAVGPLGFVAAVDISMPMLQVAFAK 100
                      45677889************************************98665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.5
                      -S-HHHHHHHHHHHEEEEEEEE CS
  Ubie_methyltran 129 vtDklkaLkeayrvlkpGGrlv 150
                      v+ ++ +L+     l pGG lv
       KKY22274.1 161 VAQRPAVLRRWASLLAPGGVLV 182
                      6778899999999999*99886 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   9.1e-06     0.018      62     108 ..      45      91 ..       9     102 .. 0.78
   2 ?   -2.2   0.0       1.4   2.9e+03     143     170 ..     156     182 ..     127     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 9.1e-06
                 HHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBH CS
        PCMT  62 valalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierik 108
                  a+++    l++g+ vL++G+G+G  +    r vg+ g v +++ + 
  KKY22274.1  45 AATLVSKAGLQPGMFVLDLGTGTGAVARAADRAVGPLGFVAAVDISM 91 
                 455666667*****************************999998655 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
                 EEEEEESSBBSS--HHHHHTEEEEEEEE CS
        PCMT 143 YdaihvgaaapeiPealidQLkeGGrlv 170
                 Y+ i v a  p + + +   L++GG lv
  KKY22274.1 156 YNDIEV-AQRPAVLRRWASLLAPGGVLV 182
                 555555.456788888999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2127.31
//
Query:       KKY22275.1  [L=776]
Description: putative ulp1 protease family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-13   50.3   0.0    5.3e-13   49.3   0.0    1.4  1  Peptidase_C48  Ulp1 protease family, C-terminal catalytic dom


Domain annotation for each model (and alignments):
>> Peptidase_C48  Ulp1 protease family, C-terminal catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0     3e-17   5.3e-13      80     189 ..     606     712 ..     588     742 .. 0.86

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 3e-17
                    GGG-SEEEEEEEC.TTEEEEEEEETCCCEEEEE-TTS-SSH.HHHHHHHHHHHHHHHHHCCCCCSTT-.GGGEEEEEEE-----SSCCCHHHHHHH CS
  Peptidase_C48  80 lfdkdiiyiPinedgkHWvlliinlpdktililDSlislhtvkkenrpinnlkpyLleealkkkqkqldltpfeierltkvpqqknsgDCGiyvlk 175
                     + +   ++Pi+ d++HW+l+  + +++  +++DS+ ++ +   + r+++++++ L++   +     +dl+   +e      qq++++DCG++v+ 
     KKY22275.1 606 RTTAGNMLVPIHVDSNHWILVYLDFNNRILYYMDSMEDPSR---RQRIVAQIRELLKSLHTNAPGVWPDLNIGLQESPLRSGQQETAYDCGLFVID 698
                    55555679*********************************...9999********999877777777999999********************** PP

                    HHHHHHCTHHCHHH CS
  Peptidase_C48 176 fiellaegapqess 189
                    ++++l +g + +s+
     KKY22275.1 699 NARHLVRGLTPNSQ 712
                    ******99888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.52
# Mc/sec: 4456.93
//
Query:       KKY22276.1  [L=207]
Description: hypothetical protein UCRPC4_g03325 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1347.72
//
Query:       KKY22277.1  [L=596]
Description: hypothetical protein UCRPC4_g03300 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-07   28.5   0.0    1.8e-06   27.0   0.0    1.7  2  Fungal_trans_2  Fungal specific transcription factor domain
  ------ inclusion threshold ------
       0.24   11.4   0.7        4.9    7.2   0.1    2.5  2  DUF4298         Domain of unknown function (DUF4298)


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0     2e-10   1.8e-06      20     159 ..     246     384 ..     229     450 .. 0.82
   2 ?   -1.8   0.0      0.11     1e+03      25      45 ..     468     488 ..     459     506 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2e-10
  Fungal_trans_2  20 s..snpfrkvllplalsnkallhallalsafhlqskgpkdslereakrykslalkelqealaelsstlsrnekykdiLaai.....Lllcsie.i 106
                     s   + +++v+lp+a   +  l+++la + ++++++++     +    yk +a  ++qea+++ +s+       ++++a +     L+l +    
      KKY22277.1 246 SnrFAVHKTVFLPIAFLYPESLYMCLASANLYMTQRYGIAD-TSLTDFYKAKAYARIQEAMNKAESRYA-----DSVVAGLcgsaaLALGVSPgF 334
                     44567889*************************99999998.89999**********************.....999999999988888888875 PP

  Fungal_trans_2 107 ssgd.vsdwrvhLeaatsliksrggskasssslsskarfllrifayldilsstt 159
                     s+ + +++  +h+ +   ++++rgg+    +s +  +r+ l + + + i++ t+
      KKY22277.1 335 SDESnMYEFMTHMMGLGQVMRMRGGQ----QSTRDNPRLDLGYTSIWLIIGKTW 384
                     55546999******************....444444555555555555555555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.11
  Fungal_trans_2  25 rkvllplalsnkallhallal 45 
                     r++l++ a+++ all+  la+
      KKY22277.1 468 RRILFESAHHSFALLYIALAM 488
                     7899************99985 PP

>> DUF4298  Domain of unknown function (DUF4298)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1   0.00055       4.9      35      53 ..      51      69 ..      41      78 .. 0.83
   2 ?    1.7   0.1     0.028   2.5e+02      34      54 ..     288     308 ..     285     317 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00055
                HHHHHTSHHHHHHHTS--S CS
     DUF4298 35 LdeYYqseqwredleasnk 53
                ++eYY +e w++++++ ++
  KKY22277.1 51 MREYYRKERWKKCMNHRQE 69
                89***********998665 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.028
                 HHHHHHTSHHHHHHHTS--SS CS
     DUF4298  34 kLdeYYqseqwredleasnkg 54 
                  L ++Y+ + + +  ea nk 
  KKY22277.1 288 SLTDFYKAKAYARIQEAMNKA 308
                 699********9999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 4380.24
//
Query:       KKY22278.1  [L=918]
Description: putative secretion pathway protein sls2 rcy1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.1e-134  448.6   0.0     5e-134  448.4   0.0    1.0  1  Sec10       Exocyst complex component Sec10
    0.00016   21.5   0.8    0.00029   20.7   0.1    1.8  2  F-box-like  F-box-like
    0.00056   19.7   0.1     0.0011   18.8   0.1    1.5  1  F-box       F-box domain


Domain annotation for each model (and alignments):
>> Sec10  Exocyst complex component Sec10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  448.4   0.0  8.3e-138    5e-134      15     705 ..     179     902 ..     176     908 .. 0.91

  Alignments for each domain:
  == domain 1  score: 448.4 bits;  conditional E-value: 8.3e-138
       Sec10  15 isevgqtavklgeqLesadkqrqraseaaeLiefykeflssgetsklellfkkskdpekklkaAqiarkLlaiskeldelekaentrekiekyaerlEk 113
                  +e+ ++++ + +++++ ++q+ ++++ a L ++y++++++ +  + + l   +k+ ++++k+A++++ L+++++++  + + + + e+++ +++ +E 
  KKY22278.1 179 EDETIFRVLYNVQSIRGKARQEFGKVYCA-LSPYYNDISRQMQ--PMNAL--VFKTFATPEKQAKLLAHLRTFARSD-ISIGSATRLERLNGAISVFEA 271
                 56777889999999***************.*******999998..65555..45555555*****************.9******************** PP

       Sec10 114 elLkeFdkayrked.fermkeiAkvLqefnggasvvqlfvnqhdffidkdkldeangiesseiwekladpdeapskveeslqalfseiretvkeeaeii 211
                 + L+e + ay+k+d  + mk + +vL+ +  g + ++ fv+ + ++ +k+k++++++         l  +     ++ e+ q +f+++  ++ ee  ii
  KKY22278.1 272 AALQELRLAYEKKDiQKSMKRYTSVLNLLDAGQQSIDFFVQNNTLIANKSKYGDTAD--------SLDYSSGRGVISIEKIQVFFNKLAIAYAEEEGII 362
                 **************9999**********************************55555........4556888999************************ PP

       Sec10 212 krVFpnpekVmqtFlqrvfaqviqqrlealLdkassisqlayLraLhslysstlkLvkdLkeylsteeidgssalsalLdqsveelFvpylegdsYler 310
                 +  Fpnp+ V   F+ ++ +q+++++l+al+d+a +  ++ yL+++ s++++t+++ + + +  ++++      l  ++++ +  +F+p+l  d Yl  
  KKY22278.1 363 SHGFPNPAIVKPPFVSTIGKQILYPYLTALFDEAGNRGSETYLKTVGSTFAQTRQFFDAISANVEDTH------LLSAIKETLITIFEPHL--DLYLGA 453
                 ***************************************************************88888......89999999*********..****** PP

       Sec10 311 EkksLeelyaellskFt.tlheqsasakslk......nkvkkklatsfkasls..................asklaassktkqinraasstlskskkra 384
                 E + +++  ++++++++  l+eq+as+++++      +++kk++++sfk++++                  a  l + ++ +q   ++ s   +++ r+
  KKY22278.1 454 ELEFFQQSSKAKVDEWDqALSEQAASTETFLmsninrQADKKDFLSSFKKVVMmpvnilpsfptmssnkpaARALMNGESVEQAIPNELSNSGTNTPRM 552
                 *****************888****************************************999877665554444455555555555555555555554 PP

       Sec10 385 elketaats........akaaknedeleeedsllslevaesllkwaaeslgRaveLss.....psevpkaveallelLlsalgkeYvetaLd.aal... 466
                 +l++t+a +        akaa + ++le+++sl+s+eva++l++ a++ l+Ra+++       ++ ++ +++ ++++Ll  lg ++v++++d a+    
  KKY22278.1 553 SLRSTMAVQeapttelaAKAAIMSSKLEGIRSLFSIEVALDLVHIAKAGLERAAQFTYlggeaGESAKTQCSTIFVALLHVLGTRHVKSGFDkAVShls 651
                 55555444466677788999*************************************9*9999999**************************99989** PP

       Sec10 467 .aaltaqeiaekt..evpdls.flevvrsvdliisllqvyiktill..pllsdspdirremvkeknsflsrlEekvnaglqktidvvvgeveylls.kq 558
                  +++++++ ++ t  +v++l  fle+v+++dli+++l+v+++++l+  p+  d+ d++ ++vkek++f+++l+e+v+agl k+idv+++evey+++ +q
  KKY22278.1 652 dYKPREVKSHKSTgaGVQPLTtFLELVNIADLIQQMLDVFYEQELIgpPVSLDRSDFLSAAVKEKKKFEQMLDERVAAGLGKGIDVLMDEVEYVCAtTQ 750
                 *88877777766522689*****************************88889*********************************************** PP

       Sec10 559 kknDFrpknddlamerqpTeaCkeivefLssvhsalkeslsgsnlesflteiGlrlhklLleHlkkftvsseGGlmltkDlneYqdavksfkipelsek 657
                  ++D++  +     +++ T ++kei++++s ++s+l++s+++s l++f+ e+Glrl+++L++Hlk++++s+ G+l+l++D+n+Y+ ++ ++k+p+l+ +
  KKY22278.1 751 LPTDYNIPDTGQISDVGITDTAKEIIQLVSGHTSMLVGSTDKSLLDVFNAEVGLRLFAALCKHLKRQRISTLGSLRLIADMNAYYAYIVTLKNPDLLLY 849
                 ******988888889************************************************************************************ PP

       Sec10 658 FelLrelgnlfiVqpevlkslvregal.....akldrelireyiqrReDykke 705
                 F +Lrelg+l++++ +++  ++  +a      + +++e++ e+++rR+D+  +
  KKY22278.1 850 FGALRELGQLYLIDEKDAGDMAGVIAEgdrwrGVFRAEEVLEFAERRADWFIV 902
                 *************9999999988888888899******************754 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   4.9e-08   0.00029       4      40 ..      45      80 ..      43      84 .. 0.91
   2 ?   -4.2   0.1       2.9   1.7e+04       7      14 ..     437     444 ..     437     451 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 4.9e-08
  F-box-like  4 LPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtpl 40
                LP E++ qI +yL+  d+lr a+V rr +++++ + +
  KKY22278.1 45 LPLELIAQIVDYLEIPDMLRFARVNRRMCDMVYEE-S 80
                9******************************9877.5 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 2.9
  F-box-like   7 EiLlqIFs 14 
                 E L++IF+
  KKY22278.1 437 ETLITIFE 444
                 7799***8 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   1.9e-07    0.0011       6      43 ..      45      82 ..      43      86 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.9e-07
                S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHH CS
       F-box  6 LPsevlrhILerLplsdllalrrVSkgwrilidsdrlw 43
                LP+e++ +I  +L+  d l+++rV +++ +++ + ++w
  KKY22278.1 45 LPLELIAQIVDYLEIPDMLRFARVNRRMCDMVYEESRW 82
                9****************************999887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (918 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 5983.41
//
Query:       KKY22279.1  [L=131]
Description: hypothetical protein UCRPC4_g03302 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-20   71.1   5.9    1.5e-16   60.8   0.5    1.7  2  DUF3602   Protein of unknown function (DUF3602)


Domain annotation for each model (and alignments):
>> DUF3602  Protein of unknown function (DUF3602)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.5   8.3e-21   1.5e-16      17      81 .]       9      74 ..       2      74 .. 0.91
   2 !   19.3   0.7   7.2e-08    0.0013      28      69 ..      61     102 ..      57     112 .. 0.57

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 8.3e-21
     DUF3602 17 tgpqgsktdgsttsafstGRGGaGNihssdrerpe.trkdedvereearrkeeaeeyhvGRGGaGN 81
                + ++  +t+ ++ts+++tGRGG+GN++++d  +pe +r+ +d+ ++ a++ +++ eyh+GRGG +N
  KKY22279.1  9 EAVEDLETPTLKTSHYTTGRGGTGNMAKNDPDHPElAREAQDLSPPLAAELKKTGEYHTGRGGTAN 74
                55667788999999***********************************999***********999 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 7.2e-08
     DUF3602  28 ttsafstGRGGaGNihssdrerpe...trkdedvereearrkeea 69 
                 +t ++ tGRGG++Ni + +  ++e   +++ + +++  +r+ ++a
  KKY22279.1  61 KTGEYHTGRGGTANIYRPS--QAEieeAQEHNTLVKTRSRS-KDA 102
                 3459************655..55522333333333333333.344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.47
# Mc/sec: 844.56
//
Query:       KKY22280.1  [L=385]
Description: putative nucleoside diphosphatase gda1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-85  286.3   0.2    4.4e-85  285.6   0.2    1.3  1  Velvet    Velvet factor


Domain annotation for each model (and alignments):
>> Velvet  Velvet factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.6   0.2   2.4e-89   4.4e-85       1     249 [.      35     371 ..      35     372 .. 0.80

  Alignments for each domain:
  == domain 1  score: 285.6 bits;  conditional E-value: 2.4e-89
                 EEEEEEE---EEE---SS-S-----BS--EEEEEEEETTT-SB--GGG---TTEEEEEEEEETTSSSB--EE........................... CS
      Velvet   1 ysLevvQqPkrARmCgfgdkdrrpidPppvvqLrvtdaetnsevdveeldssffvvtvdLwsedgtkevnlv........................... 72 
                 ysLevvQqP+rARmCgfgdkdrrpi+Ppp+++L++ +a t++e++++e+d+sf+v+tvdLw+++g++e nlv                           
  KKY22280.1  35 YSLEVVQQPIRARMCGFGDKDRRPITPPPCIRLIIKRAGTGEEINISEVDTSFYVLTVDLWDASGKEEQNLVknpggspnpaisasiplayphtvhnsd 133
                 99**********************************************************************777777777777766666665433332 PP

                 ....--.---------.-------------.--------------------------.......................................... CS
      Velvet  73 ....kssssasssisseasssssqsseess.sspksqassaessapsssaapsaqee.......................................... 124
                     +            + sss+ ss+++s ss +s++++a+++ ps+                                                   
  KKY22280.1 134 mtssQ------------HPSSSYFSSSTNSySSASSDPRYAQPAPPSA--------Ysnpspygpssstsgygppstngyvyhsayqppspytqqspmt 212
                 22111............1111111111111122222233333333332........0223333345666666667888999999999999999999999 PP

                 ................-------------------EESEEE--EEE-EEEE-TT--EEEEEE---EEESS-EEEEEEEEEEE-B-S............. CS
      Velvet 125 ................kekkeatlssssnqasskltrnLiGslvasafrlkdpedkpgifFvfqDLSVRteGtFrLrfrlvnvgae............. 194
                                 +  ++a++++ss+++   ++rnLiGsl+asaf+l+d ++++gi+Fv+qDLSVR+eG FrL++++v+vg+              
  KKY22280.1 213 saggyasgipphmhsrDYVTSASTATSSSSNPPVYNRNLIGSLSASAFVLTDDKGQEGIWFVMQDLSVRQEGIFRLKMSFVDVGNAsrrgadgsvpiss 311
                 99***********998555555555555566679***************************************************************** PP

                 ....--B--S..SEEEEEEEEE---EEEE-TTT--------HHHHHHHHTT----XXX.X CS
      Velvet 195 ....avaveekegsapvlaevfSdpFtVysakkFpGvlesTaLskalakqGikipiRk.d 249
                       +++   ++apvla++fS+pF+V+sakkFpGv+esT+Lsk++a+qGikipiR+ d
  KKY22280.1 312 qtldGRSSNGLRTTAPVLASCFSKPFQVFSAKKFPGVIESTELSKTFANQGIKIPIRQgD 371
                 *9986667777899*******************************************966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2678.79
//
Query:       KKY22281.1  [L=547]
Description: putative wd repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-58  192.1  30.7    1.7e-11   44.5   0.2    9.1  8  WD40         WD domain, G-beta repeat
    4.1e-20   71.9   1.3    0.00058   20.1   0.1    6.5  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    1.3e-07   31.7   0.0      0.013   15.4   0.0    3.3  3  eIF2A        Eukaryotic translation initiation factor eIF2A
    2.4e-07   30.0   0.2        0.2   10.6   0.0    4.8  5  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
    6.1e-06   25.2   4.6       0.63    8.6   0.0    5.1  6  Nup160       Nucleoporin Nup120/160
    6.9e-05   23.3   0.0    0.00016   22.1   0.0    1.6  1  NLE          NLE (NUC135) domain
  ------ inclusion threshold ------
       0.12   11.7   0.0         39    3.4   0.0    3.6  4  WD40_like    WD40-like domain
       0.99    9.4   5.9         58    3.8   0.0    4.4  5  PD40         WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.2   4.2e-07   0.00095       2      38 .]     142     180 ..     141     180 .. 0.89
   2 !   44.5   0.2   7.5e-15   1.7e-11       1      38 []     184     222 ..     184     222 .. 0.96
   3 !   26.4   0.1   3.8e-09   8.6e-06       6      38 .]     232     271 ..     227     271 .. 0.90
   4 !   26.9   0.6   2.7e-09     6e-06       5      38 .]     279     312 ..     275     312 .. 0.91
   5 ?    4.2   1.1      0.04        89       4      37 ..     319     394 ..     316     395 .. 0.54
   6 !   26.2   0.0   4.4e-09   9.9e-06       3      38 .]     402     438 ..     400     438 .. 0.90
   7 !   34.7   0.1   9.4e-12   2.1e-08       3      38 .]     468     504 ..     466     504 .. 0.96
   8 !   24.6   0.1   1.4e-08   3.1e-05       3      37 ..     510     545 ..     508     546 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4.2e-07
                 EEEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                 +c  +++GH   + +++fsp ++  +++Gs D t riWd
  KKY22281.1 142 RCSASISGHgEAILAVSFSPINSStMVTGSGDSTARIWD 180
                 688999***666*****99999998789*88*******9 PP

  == domain 2  score: 44.5 bits;  conditional E-value: 7.5e-15
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g++l+tl+GH s+v ++++spdg+++a+Gs+D+tvr+W+
  KKY22281.1 184 GTPLHTLKGHtSWVLAVSYSPDGSLIATGSMDNTVRLWN 222
                 579*******888*************************8 PP

  == domain 3  score: 26.4 bits;  conditional E-value: 3.8e-09
                 EEESS.SSEEEEEEETTSSE......EEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgaw......lasGsdDgtvriWd 38 
                   +GH +++tsla+ p+++       las+s+D tvriWd
  KKY22281.1 232 PMKGHsKWITSLAWEPHHSQepgkprLASSSKDATVRIWD 271
                 568**999****99999999999999*************9 PP

  == domain 4  score: 26.9 bits;  conditional E-value: 2.7e-09
                 EEEESS.SSEEEEEEETTSSE.....EEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgaw.....lasGsdDgtvriWd 38 
                 ++ltGH +s+t++      +w     + ++s D+t++iWd
  KKY22281.1 279 TVLTGHkGSITCV------RWggidrIYTSSQDKTIKIWD 312
                 579***888****......99999999************9 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.04
                 EEEEESS.SSEEEEE................EETTSSE..............................EEEEETTSEEEEE CS
        WD40   4 lrtltGH.ssvtsla................fspdgaw..............................lasGsdDgtvriW 37 
                 ++tl+ H  +v++la                +                                    l+s+sdD t ++W
  KKY22281.1 319 IQTLSSHaHWVNHLAlstdfvlrtsfydpheT-----SkppqtpeerqtksyqrfqkaatvsnkiierLVSASDDFTMYLW 394
                 56777774457777755555555444222220.....14444444444444444455555566666667788889988888 PP

  == domain 6  score: 26.2 bits;  conditional E-value: 4.4e-09
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++  l GH + v+ + fspdg ++as++ D+ v++W+
  KKY22281.1 402 PVARLLGHqKQVNYVTFSPDGMYIASAGFDNCVKLWN 438
                 667788**999**************9988*******8 PP

  == domain 7  score: 34.7 bits;  conditional E-value: 9.4e-12
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  l+tl+GH  +v+ ++fs d+++l+s+s+D t+++Wd
  KKY22281.1 468 FLHTLRGHvAPVYQCSFSADSRLLVSSSKDTTLKVWD 504
                 69******999*************************9 PP

  == domain 8  score: 24.6 bits;  conditional E-value: 1.4e-08
                 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGHss.vtslafspdgawlasGsdDgtvriW 37 
                 +   l GH++ v ++++spdg  + sG++D+ vriW
  KKY22281.1 510 LSMDLPGHKDeVFAVDWSPDGLRVGSGGKDKAVRIW 545
                 566789**556************87999******** PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0063        14      29      79 ..     134     193 ..      99     198 .. 0.81
   2 !   20.1   0.1   2.6e-07   0.00058      37      90 ..     193     246 ..     189     248 .. 0.91
   3 !   11.4   0.1   0.00014      0.31      36      90 ..     235     294 ..     231     296 .. 0.81
   4 !    9.1   0.7   0.00072       1.6      27      81 ..     275     327 ..     258     336 .. 0.70
   5 !   14.3   0.0   1.6e-05     0.036      36      80 ..     408     452 ..     393     459 .. 0.89
   6 !   13.6   0.0   2.9e-05     0.064      40      90 ..     478     527 ..     466     529 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0063
  ANAPC4_WD40  29 vwtl........eedkedsevrsLaWkp.dgklLavaysdgevrlldaesgkvvhslsvk 79 
                  v+ +        + +++++ + +++++p + + ++ +  d++ r+ d  +g+ +h+l+ +
   KKY22281.1 134 VFRVkavsrcsaSISGHGEAILAVSFSPiNSSTMVTGSGDSTARIWDCDTGTPLHTLKGH 193
                  444444444444667899999999999856789999*******************99866 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 2.6e-07
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  + s v +++++pdg+l+a +  d++vrl +a++g+ +     +++k +t+l W+
   KKY22281.1 193 HTSWVLAVSYSPDGSLIATGSMDNTVRLWNAKTGESLGGPMKGHSKWITSLAWE 246
                  56778999*****************************9998888889*****97 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.00014
  ANAPC4_WD40  36 kedsevrsLaWkpdgk......lLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  ++++ ++sLaW+p  +       La + +d +vr+ d+   ++   l+ ++  ++tc+ Wg
   KKY22281.1 235 GHSKWITSLAWEPHHSqepgkpRLASSSKDATVRIWDVVLRRIETVLTGHKG-SITCVRWG 294
                  56677999999887432222247*****************999999988888.5******7 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00072
  ANAPC4_WD40  27 qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +r+ t+  +++++++++++W   +++   + +d ++++ d+++++++++ls +++
   KKY22281.1 275 RRIETV-LTGHKGSITCVRWGGIDRIY-TSSQDKTIKIWDSKKATLIQTLSSHAH 327
                  333333.46788999999999998865.567889999999999999999988876 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 1.6e-05
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  +++++v+ + ++pdg  +a a  d+ v+l +a +gk v+ ++   
   KKY22281.1 408 GHQKQVNYVTFSPDGMYIASAGFDNCVKLWNARDGKYVNPFPLYP 452
                  57899*********************************9988765 PP

  == domain 6  score: 13.6 bits;  conditional E-value: 2.9e-05
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                   v + +++ d +lL+ + +d+++++ d+ +gk+   l+ ++++ v  ++W+
   KKY22281.1 478 PVYQCSFSADSRLLVSSSKDTTLKVWDVRTGKLSMDLPGHKDE-VFAVDWS 527
                  6778899********************************9996.*****97 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.7e-06     0.013      35     154 ..     128     248 ..     115     272 .. 0.80
   2 !   11.8   0.0   7.1e-05      0.16      99     138 ..     409     445 ..     387     456 .. 0.84
   3 ?   -1.6   0.0      0.93   2.1e+03     127     155 ..     500     530 ..     482     534 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.7e-06
                 EEEEEEEEESSSTT--EEECCEESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECS.CEEEEEEEEES--..EEEE-TTSSEEEEE-TTSSS-EEEEE CS
       eIF2A  35 yygetelyliklkkkksevvelkkegpihdvaWspkskefaviyGkmpakvslfdlk.vkviskleeqkrN..tiffspkgklvllaGfgnlaGeleiw 130
                  y+ ++++++k+ +  s +++ + e  i +v+ sp ++   ++ G  ++++ ++d + + ++++l+ +     ++ +sp g l++++ + n+   + +w
  KKY22281.1 128 NYTPQAVFRVKAVSRCSASISGHGE-AILAVSFSPINSST-MVTGSGDSTARIWDCDtGTPLHTLKGHTSWvlAVSYSPDGSLIATGSMDNT---VRLW 221
                 5889999999777776666666555.4********99885.679************65999999998876522688**************99...9*** PP

                 ETTTTEEEE...EEE-TT--EEEE-TT CS
       eIF2A 131 dvkkkkkia...kaeaanatlvewspd 154
                 + k+ +++    k ++++ t++ w+p+
  KKY22281.1 222 NAKTGESLGgpmKGHSKWITSLAWEPH 248
                 *99888775222556677777888775 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 7.1e-05
                 EEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEE CS
       eIF2A  99 eeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkki 138
                 ++++ N + fsp g +++ aGf n    +++w+  + k +
  KKY22281.1 409 HQKQVNYVTFSPDGMYIASAGFDNC---VKLWNARDGKYV 445
                 47889*******************9...899988876655 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.93
                 EEEEETT.TTEEEEEEE-.TT--EEEE-TTS CS
       eIF2A 127 leiwdvk.kkkkiakaea.anatlvewspdg 155
                 l++wdv   k ++    +  +   v+wspdg
  KKY22281.1 500 LKVWDVRtGKLSMDLPGHkDEVFAVDWSPDG 530
                 5566666322233333330334456777776 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0     9e-05       0.2     186     218 ..     192     225 ..     182     253 .. 0.78
   2 ?   -2.3   0.0      0.76   1.7e+03     202     219 ..     258     275 ..     250     280 .. 0.86
   3 ?    1.3   0.1      0.06   1.4e+02     260     289 ..     299     328 ..     293     342 .. 0.83
   4 !    7.9   0.0   0.00057       1.3     183     215 ..     405     438 ..     358     446 .. 0.83
   5 ?    3.3   0.0     0.014        32     183     217 ..     471     506 ..     451     545 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9e-05
    Ge1_WD40 186 eh.sliveaafspdGtalatasedGevkffqvyl 218
                  h s +   ++spdG  +at s+d +v+++    
  KKY22281.1 192 GHtSWVLAVSYSPDGSLIATGSMDNTVRLWNAKT 225
                 451589999********************98655 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.76
    Ge1_WD40 202 latasedGevkffqvyle 219
                 la +s+d +v+ + v l 
  KKY22281.1 258 LASSSKDATVRIWDVVLR 275
                 899**********99875 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.06
    Ge1_WD40 260 itgadnnselklWscelWtClqtikfapsi 289
                 i ++++++ +k+W ++  t +qt+  +++ 
  KKY22281.1 299 IYTSSQDKTIKIWDSKKATLIQTLSSHAHW 328
                 56788999***************9887764 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.00057
    Ge1_WD40 183 kieehs.liveaafspdGtalatasedGevkffq 215
                 ++  h  ++   +fspdG  +a a  d  vk++ 
  KKY22281.1 405 RLLGHQkQVNYVTFSPDGMYIASAGFDNCVKLWN 438
                 555554389999*******************996 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.014
    Ge1_WD40 183 kieehs.liveaafspdGtalatasedGevkffqvy 217
                  ++ h   + + +fs+d   l  +s+d ++k + v 
  KKY22281.1 471 TLRGHVaPVYQCSFSADSRLLVSSSKDTTLKVWDVR 506
                 5566643789999******************99985 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0041       9.2     218     255 ..     152     189 ..     102     195 .. 0.80
   2 !    4.1   0.0    0.0067        15     229     251 ..     205     227 ..     192     230 .. 0.80
   3 ?   -1.2   0.0      0.27   6.1e+02     229     247 ..     254     272 ..     237     277 .. 0.76
   4 !    4.7   0.1    0.0043       9.5     225     280 ..     290     351 ..     285     367 .. 0.76
   5 ?   -2.6   0.0      0.72   1.6e+03     230     252 ..     422     444 ..     412     447 .. 0.82
   6 !    8.6   0.0   0.00028      0.63     228     252 ..     485     510 ..     474     528 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0041
                 EEEEET.....TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 218 sldvavavveigqtylfalsrdgkLrvWnlltgkclat 255
                 ++ +av+++ i++++ ++ s d + r+W+ +tg++l t
  KKY22281.1 152 EAILAVSFSPINSSTMVTGSGDSTARIWDCDTGTPLHT 189
                 34444444545799999****************99887 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0067
                 TTTEEEEEETT-EEEEEETTTTE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgk 251
                 + +++++ s d+++r+Wn +tg 
  KKY22281.1 205 DGSLIATGSMDNTVRLWNAKTGE 227
                 77899999***********9985 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.27
                 TTTEEEEEETT-EEEEEET CS
      Nup160 229 gqtylfalsrdgkLrvWnl 247
                 g+  l++ s d ++r+W++
  KKY22281.1 254 GKPRLASSSKDATVRIWDV 272
                 5566778889999999998 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.0043
                 .....TTTEEEEEETT-EEEEEETTTTEEEEEEE--......-SSSTTS--SSEESEEESSS CS
      Nup160 225 vvei.gqtylfalsrdgkLrvWnlltgkclatidll.....rdeeaqdessskstldpaess 280
                 +v+  g + +++ s+d+++++W+ + ++++ t +         + ++d++ + s  dp e+s
  KKY22281.1 290 CVRWgGIDRIYTSSQDKTIKIWDSKKATLIQTLSSHahwvnHLALSTDFVLRTSFYDPHETS 351
                 6666777889************8888888877555567777666677777777777776665 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 0.72
                 TTEEEEEETT-EEEEEETTTTEE CS
      Nup160 230 qtylfalsrdgkLrvWnlltgkc 252
                   y++++  d+ +++Wn ++gk 
  KKY22281.1 422 GMYIASAGFDNCVKLWNARDGKY 444
                 568999999********999886 PP

  == domain 6  score: 8.6 bits;  conditional E-value: 0.00028
                 ..TTTEEEEEETT-EEEEEETTTTEE CS
      Nup160 228 i.gqtylfalsrdgkLrvWnlltgkc 252
                 + ++ +l++ s d +L+vW+++tgk+
  KKY22281.1 485 SaDSRLLVSSSKDTTLKVWDVRTGKL 510
                 348899999**************997 PP

>> NLE  NLE (NUC135) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   7.1e-08   0.00016       1      54 [.      36      89 ..      36      91 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 7.1e-08
         NLE  1 vqvrFvtkded.eslavpgtplsvPas.ltrkqLselvnkLlkee..kpvpFdFlidg 54
                v+v+Fv+++ + + +   g+ +s+P+   ++k+L++l+n+L +++  + vp+ F   g
  KKY22281.1 36 VRVQFVDQS-NgNAT---GPAVSIPIAdASVKNLETLLNTLQGNDinERVPYRFSFQG 89
                89******7.54777...*******755***************334556**9998766 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.36   8.1e+02       5      38 ..     156     190 ..     152     198 .. 0.77
   2 ?    3.4   0.0     0.017        39       3      34 ..     197     228 ..     194     230 .. 0.90
   3 ?    1.7   0.0     0.058   1.3e+02       2      35 ..     478     511 ..     477     522 .. 0.86
   4 ?    1.5   0.0     0.069   1.5e+02       2      27 ..     520     545 ..     519     547 .] 0.92

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.36
   WD40_like   5 sidisk.kgslilyGgkddkctvlkleslesvsiv 38 
                 ++ +s+ ++s ++ G+ d ++++ + ++++    +
  KKY22281.1 156 AVSFSPiNSSTMVTGSGDSTARIWDCDTGTPLHTL 190
                 56665437889999*************99987665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.017
   WD40_like   3 iYsidiskkgslilyGgkddkctvlklesles 34 
                 + ++ +s++gsli+ G+ d+++++ + +++es
  KKY22281.1 197 VLAVSYSPDGSLIATGSMDNTVRLWNAKTGES 228
                 56899*******************99998875 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.058
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlkleslesv 35 
                 ++Y   +s ++ l++  +kd +++v +++++++ 
  KKY22281.1 478 PVYQCSFSADSRLLVSSSKDTTLKVWDVRTGKLS 511
                 79***************************99865 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.069
   WD40_like   2 eiYsidiskkgslilyGgkddkctvl 27 
                 e++++d s++g  +  Ggkd+ +++ 
  KKY22281.1 520 EVFAVDWSPDGLRVGSGGKDKAVRIW 545
                 9********************99986 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.8     4e+03       7      17 ..      44      54 ..      43      54 .. 0.88
   2 ?    3.8   0.0     0.026        58      15      24 ..     201     210 ..     198     210 .. 0.87
   3 ?    3.2   0.0     0.041        92      15      24 ..     417     426 ..     414     427 .. 0.78
   4 ?   -2.1   0.1       1.9   4.1e+03      15      24 ..     483     492 ..     483     503 .. 0.72
   5 ?    1.8   0.1      0.11   2.4e+02      16      22 ..     526     532 ..     522     533 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.8
                SSS.EEEEEE- CS
        PD40  7 tpgnegaPsfS 17
                ++gn ++P++S
  KKY22281.1 44 SNGNATGPAVS 54
                6899*****98 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.026
                 EE-TTSSEEE CS
        PD40  15 sfSPDGkrla 24 
                 s+SPDG+ +a
  KKY22281.1 201 SYSPDGSLIA 210
                 89****9997 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.041
                 EE-TTSSEEE CS
        PD40  15 sfSPDGkrla 24 
                 +fSPDG ++a
  KKY22281.1 417 TFSPDGMYIA 426
                 8*****5554 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 1.9
                 EE-TTSSEEE CS
        PD40  15 sfSPDGkrla 24 
                 sfS D + l+
  KKY22281.1 483 SFSADSRLLV 492
                 7999996554 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.11
                 E-TTSSE CS
        PD40  16 fSPDGkr 22 
                 +SPDG r
  KKY22281.1 526 WSPDGLR 532
                 *****65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.65u 0.23s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3707.77
//
Query:       KKY22282.1  [L=1196]
Description: putative protein kinase and ribonuclease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-36  126.1   0.0    5.5e-26   91.5   0.0    3.0  3  Pkinase       Protein kinase domain
    9.6e-34  116.3   0.0    1.8e-33  115.4   0.0    1.5  1  Ribonuc_2-5A  Ribonuclease 2-5A
    4.5e-20   72.0   0.0    1.2e-16   60.9   0.0    2.4  2  Pkinase_Tyr   Protein tyrosine kinase
    7.2e-07   28.8   0.3      0.072   13.1   0.0    2.9  2  PQQ           PQQ enzyme repeat
  ------ inclusion threshold ------
      0.026   13.9   0.0      0.051   12.9   0.0    1.4  1  Kdo           Lipopolysaccharide kinase (Kdo/WaaP) family
      0.029   14.0   0.1       0.17   11.5   0.0    2.3  2  PQQ_2         PQQ-like domain
       0.05   12.9   0.0        0.1   11.9   0.0    1.4  1  Kinase-like   Kinase-like
        0.5    8.5   4.1       0.72    8.0   4.1    1.1  1  Red1          Rec10 / Red1


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.24   5.5e+02     175     212 ..     396     432 ..     392     457 .. 0.74
   2 !   91.5   0.0   2.4e-29   5.5e-26       3     173 ..     748     938 ..     746     946 .. 0.86
   3 !   30.4   0.0     1e-10   2.3e-07     171     264 .]     973    1059 ..     967    1059 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.24
                 SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHT CS
     Pkinase 175 skkvDvWslGvilyelltgkppfsgekgkekvekeldq 212
                 +++ D+++    ++ ++t + p++  +++++++  ++q
  KKY22282.1 396 TENGDWYAFSESFFPMVTSQAPWARISRDNTFAD-FEQ 432
                 7789********************8888775543.333 PP

  == domain 2  score: 91.5 bits;  conditional E-value: 2.4e-29
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH....HHSS-- CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladlle....rkgsls 96 
                 +++ lGeGs+G+V+    +  g++vAvK++ +++  +       rEi++l +++  +n+vr+++  ++ + +++ le+    +l++++e      + ++
  KKY22282.1 748 REKILGEGSNGTVVFPG-ELHGRQVAVKRLIRSSSINLA----NREIQLLLRSDnNENVVRYFGKETSAHFMWIALELFT-ASLDQFVEhpgnYPTLIP 840
                 6789*********9887.599**********99988866....5*********99************************9.55*****96665444566 PP

                 HH..HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE...........EEE-SGTTSEESSSSCS........BCTTTSCGGGS-HHHHTTSC CS
     Pkinase  97 ee..eakkiakqilegleylHskgiiHrDlKpeNiLidekge...........lKitDFGlakelesssk........ltsfvgtseYlAPEvlkene 173
                 ++  +  + ++qi +g+++lH  +++HrDlKp+NiL++ +++             i+DFGl+k+l+++++         ++  gt  ++APE+l +++
  KKY22282.1 841 PAgiDPVDCVTQITRGVQHLHGLKLVHRDLKPQNILVKPRDNlrlngrtptlrYVISDFGLCKQLDENNPhstfaptaNHTAAGTTGWRAPELLVDSR 938
                 66445569******************************64445777888887788***********999999*****9999************94443 PP

  == domain 3  score: 30.4 bits;  conditional E-value: 1e-10
                  TSCBSHHHHHHHHHHHHHHHHH.SS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase  171 eneyskkvDvWslGvilyellt.gkppfsgekgkekvekeldqlekilkilg.etkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264 
                  +++++k++Dv+slG+i+y ++t gk+p+    ++      +++    l+i + ++++ + +  + s ea dl+ ++l+ +p +R++  ++l hpy+
  KKY22282.1  973 GRRVTKAIDVFSLGCIFYYVMTrGKHPYDFGGEHL-----ARD----LNIKNdKKDLGYLKMFDYSYEAEDLILQMLQHEPGHRISTFDILIHPYF 1059
                  56789************986653899999333333.....333....222222556666777778******************************8 PP

>> Ribonuc_2-5A  Ribonuclease 2-5A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.4   0.0   7.9e-37   1.8e-33       1     127 []    1065    1195 ..    1065    1195 .. 0.93

  Alignments for each domain:
  == domain 1  score: 115.4 bits;  conditional E-value: 7.9e-37
  Ribonuc_2-5A    1 rlefLrdvSdrfeiekrdp.esellkkLeseasev.vksdWtkkldkelvdslgkyrkYkgdsvrdLLRaiRNkkeHyeelpedvkeilgelpeg 93  
                    +l+fL+dvSd +e+ek++p  s+ l++L+s a +v  k+d+ + l +++ dslgk+r+Y+g++++dLLRa+RNkk+H+++l+ ++k +++ lp g
    KKY22282.1 1065 KLQFLCDVSDYMEHEKTRPeGSSDLDALQSLAPDViPKNDFLTALPRKFKDSLGKQRSYTGSRMLDLLRALRNKKNHFNDLDPEIKVMIEALPGG 1159
                    69**************87735669***********5555******************************************************** PP

  Ribonuc_2-5A   94 flsYftkrFPkLlievyevvketl..keeevfkkyf 127 
                    +++++++rFP+Ll+ ++ +v e    +++ vf+kyf
    KKY22282.1 1160 YWQFWAERFPSLLVCCHCLVIERGlaEKSGVFRKYF 1195
                    *****************9998887778899999997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   5.1e-20   1.2e-16       4     184 ..     749     941 ..     746     943 .. 0.84
   2 !    8.6   0.0   0.00046         1     178     250 ..     972    1048 ..     954    1056 .. 0.66

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 5.1e-20
                  EEEEEEESSEEEE.EEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT.... CS
  Pkinase_Tyr   4 gkklGeGafGkVv.egtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkk.... 95 
                  +k lGeG+ G+Vv  g+l+        +VavK l    ++++ +   +e++++ +  +++n+v++ g  t+++ ++i +e+ +  +L++f+++     
   KKY22282.1 749 EKILGEGSNGTVVfPGELH------GRQVAVKRL---IRSSSINLANREIQLLLRSdNNENVVRYFGKETSAHFMWIALELFT-ASLDQFVEHPgnyp 836
                  688*******975268888......99*******...45555667788****99999*************9999999999986.69******994443 PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE...........TTEEEE-STTTHEETTTSSEE.....EETTSSTSGGGGS-HHHH CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse...........nkvvkisDfGLardiekddey.....vkkeeaklpvkWmapEsl 177
                  +  +    d +++++q+ +G+++L+  klvHrdl  +N+L++            +    isDfGL++++ +++       +++++a     W apE l
   KKY22282.1 837 TLIPPAGIDPVDCVTQITRGVQHLHGLKLVHRDLKPQNILVKPrdnlrlngrtpTLRYVISDFGLCKQLDENNPHstfapTANHTAAGTTGWRAPELL 934
                  33344456899*******************************98999999998888899**********554443456777788888999******** PP

                  HHSEEEH CS
  Pkinase_Tyr 178 kekkfts 184
                   +++ t+
   KKY22282.1 935 VDSRATV 941
                  9998776 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00046
                   HHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH..HTTEE...S-BBTTSBHHHHHHHHHHT-SSGGGS- CS
  Pkinase_Tyr  178 kekkftsksDvWsfGvllwEiftlgespypglkneevlekl..kegkr...lekpekcpeelyelmkkcweedpeeRp 250 
                   + +++t++ Dv+s G + + ++t g++py     e++++ l  k++k+     k  + + e  +l+ + ++++p +R 
   KKY22282.1  972 SGRRVTKAIDVFSLGCIFYYVMTRGKHPYDFG-GEHLARDLniKNDKKdlgYLKMFDYSYEAEDLILQMLQHEPGHRI 1048
                   55778999********************9643.222222221122222222334444556666667777776666665 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   3.9e-05     0.088       6      30 ..     124     148 ..     121     151 .. 0.87
   2 !   13.1   0.0   3.2e-05     0.072       3      32 ..     213     242 ..     211     246 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.9e-05
                 EETTSEEEEEETTTCCEEEEEESSS CS
         PQQ   6 gsadGylyAlDadTGkvlWrfktgg 30 
                 ++  G++ A+D+ TG  +W+ + +g
  KKY22282.1 124 ATLEGKVHAVDRITGATKWTMNYQG 148
                 5889***************998766 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 3.2e-05
                 EEEEETTSEEEEEETTTCCEEEEEESSSCG CS
         PQQ   3 vylgsadGylyAlDadTGkvlWrfktggpv 32 
                 vy +  d  ly +DadTG+v+  f +gg +
  KKY22282.1 213 VYTARQDSALYTIDADTGNVIKIFGVGGSD 242
                 788889999***************999876 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.3e-05     0.051     124     155 ..     850     881 ..     841     899 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.3e-05
         Kdo 124 lkavgrliaklhragvnHadlyaknillqqee 155
                 + ++ r ++ lh +++ H+dl ++nil++ ++
  KKY22282.1 850 VTQITRGVQHLHGLKLVHRDLKPQNILVKPRD 881
                 6899************************9986 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.5e-05      0.17       2      98 ..     127     232 ..     114     261 .. 0.75
   2 ?   -1.5   0.1       0.7   1.6e+03      95     145 ..     923     976 ..     918     979 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.5e-05
       PQQ_2   2 egvvsaldaatGaelWrvdl.arp.....lgggvsravlsggtlfva.tgggrlv..aldaatGkvlWettlegpvvgaplvaegrvvvva..sdgqli 89 
                 eg v+a+d+ tGa+ W+++  +r+     + +++  +  +  +++v  +  g+l+    d++ G ++  +t+++ + ++p ++++  +v +  +d +l+
  KKY22282.1 127 EGKVHAVDRITGATKWTMNYqGRElhapmIETIH--HNQDFYRFIVEpSQDGNLYiqHKDPSLGIQRVDFTVKALAESTPQLSDEPPLVYTarQDSALY 223
                 68999***99********7744433223344444..333444555557444444422469999999999999999999999999987777755777999 PP

       PQQ_2  90 aldaedGkr 98 
                 ++da++G++
  KKY22282.1 224 TIDADTGNV 232
                 999999987 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.7
       PQQ_2  95 dGkrlWstqqrse.epaelrssaspava.gdtvvvges.sgklvaldpkdGkvl 145
                  G++ W+  +    + a+++++++++++ ++t+ +g + s +  a+dp++G+++
  KKY22282.1 923 AGTTGWRAPELLVdSRATVATPPACTKDiQHTASIGSTgSFDGSAVDPTSGRRV 976
                 578888844444457777899999999988888888876778899999999986 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.6e-05       0.1     152     194 ..     852     894 ..     848     924 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.6e-05
  Kinase-like 152 qlirlaanLqakglvhgkftvdnllldekgglmlggftaLvra 194
                  q+ r +++L+ + lvh +++++n+l +++  l l g t+  r+
   KKY22282.1 852 QITRGVQHLHGLKLVHRDLKPQNILVKPRDNLRLNGRTPTLRY 894
                  78899*******************************9987775 PP

>> Red1  Rec10 / Red1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.1   0.00032      0.72     401     510 ..     601     713 ..     577     740 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00032
        Red1 401 eettdsesvasekkilepkedknvkkaakeltk.nsnknkdkvsklkekksigk.kdlnilddifakPvskrkktkkklksskqkklknlkpvkevkss 497
                 +++++      +  i e+++++  ++++  l++ +s+ +  ++ +  ek +++k  + ++++ i+ kP++k+k++ +  k+ k+ k+  l    ++ ++
  KKY22282.1 601 NSEPEIIESLGQTIIHEVTTEQHPPRNQDDLAEeDSGDEEADGDEVGEKLTKKKtNERSPENGIGDKPLKKTKRGRRGGKKHKKGKKSELAGEDQNTEA 699
                 45554444555455555555555555555565577777777999999999999978889***************9999999999998888888888888 PP

        Red1 498 dvknkksk.pktps 510
                   +  +s+ + tp+
  KKY22282.1 700 VHPVSESNlQDTPA 713
                 88888877744443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.50
# Mc/sec: 7194.96
//
Query:       KKY22283.1  [L=529]
Description: putative t-complex protein 1 subunit beta [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.6e-141  471.1  10.9   4.2e-141  470.9  10.9    1.0  1  Cpn60_TCP1   TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
      0.094   12.2   0.0        0.2   11.2   0.0    1.5  1  CRM1_repeat  Chromosome region maintenance or exportin repeat


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  470.9  10.9  4.6e-145  4.2e-141       3     489 ..      34     521 ..      32     523 .. 0.97

  Alignments for each domain:
  == domain 1  score: 470.9 bits;  conditional E-value: 4.6e-145
                 HHHHCCSSTTXXEEEEEE.TTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHHH CS
  Cpn60_TCP1   3 divkttlGPkGmdKmlvn.kggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekalek 100
                 d+vk+tlGPkGmdK+l++ + g++ vTnDGatilk++ +++ aak+lv++++ qd+evGDGTt+v++La+eLl+eaekl+++++hp+tii+gy+ a ++
  KKY22283.1  34 DLVKSTLGPKGMDKILQSaSTGEIMVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVTVLAAELLREAEKLVERKIHPQTIIDGYRIASHA 132
                 89****************9******************************************************************************** PP

                 HHHHHHHHXEEBXSC.STT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCSEECSCCCEECCCCEECECTTSEEESEEEESS--SSTTSSCE CS
  Cpn60_TCP1 101 aleaLkeiaveisse.ekdreeLlkvartslsskltskeaeelsklvvdAvklieenekeldlgrikvvkieggsledselveGlvldkgvlspdmpkk 198
                 al+ L++ av+ s++    r++Ll++art+lssk+ s++++ +++l+vdAv+ ++   +++dl+ i+++k+ gg+l+ds l eG++ldk +  +  pk+
  KKY22283.1 133 ALSSLEKAAVDNSKDpALFRKDLLAIARTTLSSKVLSQDRDLFAELAVDAVLRLR---GSIDLSHIQIIKKAGGKLSDSYLDEGFILDKHIGVN-QPKR 227
                 ********88888887679********************************5554...67******************************9887.5*** PP

                 EECEEEEEESS-BS--HHCC.HHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S--HHHHHHHHHHHT-- CS
  Cpn60_TCP1 199 lenakvllldvsLeiektet.kttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrvkkkdlerlakatGat 296
                 le+ak+l+ ++ ++++k ++  + v++++  +l++lekae+++++ ++eki+++g n++v+ + i +  ++++ ++gi+ +++++ + +erla +tG++
  KKY22283.1 228 LEKAKILVANTAMDTDKVKIfGARVKVESTGKLAELEKAEREKMRAKVEKIKAHGINCFVNRQLIYNWPEQLFSDAGIMSIEHADFDGIERLALVTGGE 326
                 *****************9886899*************************************************************************** PP

                 EBSCGGGGGCGC-EEEEEEEECCETTCCEEEEECESSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCCCCTSX CS
  Cpn60_TCP1 297 avssledltpeelGtakkveeekigsekttiieevksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkeyaksvs 395
                 + s+++++++ +lG+++ +ee  ig+++++ +++v+ g+++t++lrgat + lde+er+++dAl v++++++++kv +GGG++e+ +ak++++ a+++ 
  KKY22283.1 327 IASTFDHPEEVKLGQCDLIEEVIIGEDTLIKFSGVAAGQACTVVLRGATAQLLDEAERSLHDALAVLSQTVKEPKVTLGGGCAEMVMAKAVDQAAQKIG 425
                 *************************************************************************************************** PP

                 CCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHHHTTXTTEEEETTTTC..EEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEEEEXX CS
  Cpn60_TCP1 396 geeqlaieafakALevipktLaeNaGldpievlaklraahnkgekelgidvesge..iidlveagvvDplkvkrqalksAteaastiLrideiika 489
                 g+++la++af+ AL ++p +La NaGld+ +++++lr++  +g ++ g+d+ +    i+d+ e gvv+++k k+ +++sA+eaa+++Lr+d+ii+ 
  KKY22283.1 426 GKKRLAVDAFSTALRQLPTILADNAGLDSSALVSELRSEIYRGLTSSGLDLLTPGggITDMRELGVVESYKLKKAVVSSASEAAELLLRVDNIIRS 521
                 **************************************************9885556*************************************86 PP

>> CRM1_repeat  Chromosome region maintenance or exportin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.2e-05       0.2       5      21 ..      75      91 ..      72      91 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHHHHHHSHHH CS
  CRM1_repeat  5 aalqYLvkISeVedrEi 21
                 aa + Lv+IS+V+d+E+
   KKY22283.1 75 AAAKVLVNISKVQDDEV 91
                 67899***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.49
# Mc/sec: 3274.69
//
Query:       KKY22284.1  [L=616]
Description: putative peptidyl-prolyl cis-trans isomerase cype [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-51  174.1   0.1    5.3e-51  173.0   0.1    1.6  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso
    1.9e-08   34.8   0.4      0.038   14.9   0.0    5.0  5  WD40           WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.0   0.1   5.9e-55   5.3e-51       3     156 ..     468     613 ..     466     615 .. 0.92

  Alignments for each domain:
  == domain 1  score: 173.0 bits;  conditional E-value: 5.9e-55
  Pro_isomerase   3 dietsskGrivieLfadkaPktvenFlklvkegfYdgttFhRvikgfmvqgGdptgktsageqekkggesi..raipdEitsklkh.krGalamar 95 
                     i+t   G+i+++Lf++ aPk+venF+ ++++g+Y++t+FhRvi++fm+qgGdp g+++ g       esi  ++++dE+ s+lkh k+++l+ma+
     KKY22284.1 468 VIHTT-YGDIHLRLFPEAAPKAVENFVTHARTGYYNNTIFHRVIRKFMIQGGDPLGDGTGG-------ESIwnKDFEDEF-SSLKHdKPYTLSMAN 554
                    57885.9*************************************************96633.......33444689****.89999899******* PP

  Pro_isomerase  96 tgkepnsagsqFfItlkeaphldgkytvFGkVveGmdvvekiekvetdeerpkknvkivsa 156
                    +g  pn+++sqFfIt++ ap+ld+k+t+FG+ v+G+dvv kie+v+t +e+p++++ki+s+
     KKY22284.1 555 AG--PNTNASQFFITTERAPWLDNKHTIFGRAVQGLDVVHKIENVKTYKEKPEEDIKIISI 613
                    98..8*****************************************************987 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.1    0.0029        26      23      38 .]      78      93 ..      63      93 .. 0.84
   2 !   14.9   0.0   4.2e-06     0.038       5      38 .]     103     139 ..     100     139 .. 0.81
   3 ?   -2.4   0.0       1.2   1.1e+04      11      36 ..     156     180 ..     151     182 .. 0.59
   4 !    5.9   0.0    0.0029        26       3      37 ..     190     226 ..     188     227 .. 0.87
   5 ?    1.8   0.0     0.056     5e+02      13      38 .]     256     283 ..     245     283 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0029
                SEEEEEETTSEEEEEE CS
        WD40 23 awlasGsdDgtvriWd 38
                +++++ s Dg v++W+
  KKY22284.1 78 DFIITTSVDGVVKFWK 93
                56888999*******6 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 4.2e-06
                 EEEESSSS.EEEEEEETTSSEEE.EEET.TSEEEEEE CS
        WD40   5 rtltGHss.vtslafspdgawla.sGsd.DgtvriWd 38 
                 +++++Hs+ + s + s dg+ ++ +Gs+ D+t++++d
  KKY22284.1 103 KEYRAHSGrIQSHSLSADGNTFVtAGSEgDKTLKLFD 139
                 679***445*99999******88356545******98 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.2
                 SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvri 36 
                 ssv+++     +++la  +  + +ri
  KKY22284.1 156 SSVCCINKKGTSPLLAV-GIGKEIRI 180
                 46888865555566653.44455555 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0029
                 EEEEEE.SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtlt.GH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +l++l+  H s++ s+af++  + ++s+++ g v  W
  KKY22284.1 190 PLHVLKtIHrSPILSMAFNDAYDCIVSADESGMVEYW 226
                 678875589999***************9999999988 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.056
                 E.EEEEEETTSSEEEEEET.TSEEEEEE CS
        WD40  13 v.tslafspdgawlasGsd.DgtvriWd 38 
                 v + +  sp+g+ +a+ s  D++vr++d
  KKY22284.1 256 VpSNITISPSGHQFATFSFpDRKVRVFD 283
                 55567789999999875656******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4095.94
//
Query:       KKY22285.1  [L=676]
Description: hypothetical protein UCRPC4_g03308 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-15   56.8   0.0      3e-15   56.1   0.0    1.3  1  DUF3435   Protein of unknown function (DUF3435)


Domain annotation for each model (and alignments):
>> DUF3435  Protein of unknown function (DUF3435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   1.7e-19     3e-15      45     334 ..     126     400 ..      90     413 .. 0.83

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 1.7e-19
     DUF3435  45 lleLryrDleltlikdPeggrpvllvevtpeftKgklGkkkkntfvlPeiiy.dpsLvlsPhvfllgllfrdeAFkspsltsaedlyrlkvpkgrqqlp 142
                   +  + ++ l +++ P+gg + l+ ++    +Kg++  ++   f++    +  p L++     l++l++ d+A k+   +s   l++lk ++g +  +
  KKY22285.1 126 QFQFIFPHVSLAVQRVPSGGWK-LIYKLDQVWVKGNRDPENV-AFGIAS--SgHPVLLFDETAPLIALALQDGALKH--FKSIDALRKLKLKEGENFRK 218
                 55566889999******99975.7889999999999877776.566654..34899999999*************99..88****************** PP

     DUF3435 143 LklkpemldipvFcraereaegvrilkdealtastlnsrlkrlgeiagfeepitpYklRrgaakalneSgevseaqrnlilqHassrtFlkhYlsqkvd 241
                 +++ +++l++p+++++e      r++ + +++ s++   l+ +     + +++t + +Rrg ++ ++     +eaqr++il + ++++F + Y+ +  +
  KKY22285.1 219 IEFCADVLNMPILRKVEYG----RVT-EGPMPLSAFLRILRLTT--VDYSHVVTIHAIRRGLGQKVDG--RYTEAQRSQILFQNDPDVFGQSYMGDVAP 308
                 *************998754....444.88*****9999998775..4589******************..***************************** PP

     DUF3435 242 kdvqavvlglppqealiraassmsrsiDprrPkeLtdeqkasveedpelqelkrkreelkkeleakygqvakakgte...lyeelekakrelrner 334
                 ++ +a+vl+ +p++++i    +  r  +p  P eL  ++ + +e d el   k ++  l +      g ++++k++e     +++ k+++ l+  +
  KKY22285.1 309 VNGRAAVLNEDPDHSFIEYFQGLQRFWEPGFPCELPAQELDLLELDEELMTKKLRKLTLDR----DGGPLKDRKEAEldfNRCRIAKKREALERHQ 400
                 **************************************99*9**99999988888888888....8999999999985443333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.54
# Mc/sec: 3736.23
//
Query:       KKY22286.1  [L=238]
Description: hypothetical protein UCRPC4_g03309 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.5   0.0        1.8    8.6   0.0    2.2  2  DUF4298   Domain of unknown function (DUF4298)


Domain annotation for each model (and alignments):
>> DUF4298  Domain of unknown function (DUF4298)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.012   2.2e+02      20      42 ..     136     158 ..     125     169 .. 0.75
   2 ?    8.6   0.0    0.0001       1.8       8      66 ..     169     230 ..     163     231 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.012
                 HHHHHHHHTHHHHHHHHHHHTSH CS
     DUF4298  20 ealeqwkklqkklakLdeYYqse 42 
                 ++ ++ ++lq++la+L+ Y++ +
  KKY22286.1 136 RLSAEKQNLQEELAQLNGYFEAT 158
                 55566789999999999998765 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0001
                 HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSHHHHHHHTS--SS........--SSTTS CS
     DUF4298   8 ldeisallqqLeealeqwkklqkklakLdeYYqseqwredleasnkgelpqe...lkysvLS 66 
                 l ++ +++++L + l +++     l kL +YY+    ++d   s+   +++e    ++ vLS
  KKY22286.1 169 LLQAREVIEKLRRDLGEIRPKLIRLGKLARYYYGRARFSDQALSRMISVAKEtdrAQHTVLS 230
                 66788999***************************999998887776666665556777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.46s 00:00:01.02 Elapsed: 00:00:00.62
# Mc/sec: 1165.39
//
Query:       KKY22287.1  [L=402]
Description: hypothetical protein UCRPC4_g03310 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-08   33.7   0.0    4.1e-08   32.9   0.0    1.3  1  Pkinase      Protein kinase domain
    6.8e-05   22.3   0.1    0.00016   21.1   0.1    1.6  2  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.091   11.9   0.0        0.2   10.8   0.0    1.5  1  Taxilin      Myosin-like coiled-coil protein


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   6.9e-12   4.1e-08      23     140 ..      71     178 ..      59     180 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 6.9e-12
                 TTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHH.HTTEE CS
     Pkinase  23 tgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeeakkiakqilegleylH.skgii 120
                 ++ +vAvK+ k +++k +           l+klk+pn+v l+e f++ ++++++ e ++   l +++    +l  +e+ +++k++l+gl y+H + gi 
  KKY22287.1  71 NCTTVAVKERKFSNRKVEF---------SLHKLKSPNVVDLMEGFSDGTTFFFIYESMDAA-LSEIVG-IHKLGANETVHVCKEVLKGLLYIHgALGIE 158
                 5555666655555555433.........3789***************************66.998885.67899*******************8899** PP

                 -SS-SGGGEEEETTTEEEE- CS
     Pkinase 121 HrDlKpeNiLidekgelKit 140
                 H  l ++ iL+++++e+Ki+
  KKY22287.1 159 HGKLDTDTILVSRREEIKIA 178
                 ******************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   2.7e-08   0.00016      26     146 ..      70     179 ..      51     204 .. 0.82
   2 ?   -2.8   0.0      0.49   2.9e+03     208     248 ..     238     278 ..     229     286 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.7e-08
                  SSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT CS
  Pkinase_Tyr  26 kkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskk 123
                   ++++VavK  k ++++    e+      ++klk pn+v l+   +++ + +++ e ++   L++ +  +   kl  +++++++ +v kG+ y++   
   KKY22287.1  70 GNCTTVAVKERKFSNRKV---EF-----SLHKLKSPNVVDLMEGFSDGTTFFFIYESMDA-ALSEIVGIH---KLGANETVHVCKEVLKGLLYIHGAL 155
                  566777777664444333...23.....4899*************************986.8*****999...9*********************876 PP

                  .EEEST-SGGGEEEEETTEEEE-S CS
  Pkinase_Tyr 124 .lvHrdlaarNvLlsenkvvkisD 146
                   + H  l +  +L+s+++ +ki+ 
   KKY22287.1 156 gIEHGKLDTDTILVSRREEIKIAN 179
                  266*******************96 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.49
                  TSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGG CS
  Pkinase_Tyr 208 glkneevleklkegkrlekpekcpeelyelmkkcweedpee 248
                  g +++++le l+++      e+  ++++ +m + ++++ ++
   KKY22287.1 238 GATQTDLLESLQARADAMSREHSYARVTMIMGSVLTNTVSK 278
                  56677778888887777778888888888887777666655 PP

>> Taxilin  Myosin-like coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.3e-05       0.2     195     250 ..     319     374 ..     307     382 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.3e-05
     Taxilin 195 keakeltkkvkalketekelkeqlnlYaeKfeefqdtLakSnelFatFkkEmekmt 250
                 ++a++ + ++ +++++   l++ +++Y+e  + ++d +++S e+++++ + +++ t
  KKY22287.1 319 RDARDAEIRILQMTHEIGRLRQEVSYYQESHKALTDYFKRSGEIYSQWARLLQDTT 374
                 77888889999***********************************9976665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.43s 00:00:01.00 Elapsed: 00:00:00.51
# Mc/sec: 2366.29
//
Query:       KKY22288.1  [L=505]
Description: putative fad-binding domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-07   31.7   0.0      1e-06   29.0   0.0    2.0  1  NAD_binding_6  Ferric reductase NAD binding domain
    5.8e-06   26.4   0.0    1.6e-05   24.9   0.0    1.7  1  FAD_binding_8  FAD-binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.1e-10     1e-06       2     152 ..     340     472 ..     339     476 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.1e-10
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   2 envllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeekse.gnieihiYlTseyeaedasdqlissiegens 96 
                     +vll a  iGi+  i+ +k+l++  +  +++t++i l w + ++s+ +w++   ne+ + +++   i+i+iY T+  + ++   + + s  ++ +
     KKY22288.1 340 GSVLLFATEIGIAAQIPYVKELVRGFRDFKVRTRRIRLHWQIDQESNQNWVDSWFNEILDGDPQkDLIQIRIYQTKGGDLSEHPTEKFGS--HNRV 433
                    689************************************************************9999********988877766655555..2223 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6  97 eslkqgvdavsgtrnvkihfgRPnlkevlkdiaskhknssvgvfvCGppklvkevk 152
                    ++++                ++ n++e+++++  ++ +++ +v vC + +++++v+
     KKY22288.1 434 WKIH----------------QKMNIEEIFSKE-LNAVRANMAVSVCSNMAVRNRVR 472
                    3333................344555555555.55555555555555555555555 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   1.8e-09   1.6e-05      16     107 ..     245     332 ..     233     334 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.8e-09
  FAD_binding_8  16 liklkvskpkkslkykaGqyvyinipslskl.fwqsHPFtiasape.....ddklslvikvksgltkklakkllssskkelenkkaklkvlidGPY 105
                     +kl+v+ p+  ++  aGqyv + ip +  + f+q HP+tia  +          + +++ + g++ +  +++  +         +     idGPY
     KKY22288.1 245 AVKLSVTIPTP-FRVRAGQYVHLWIPGIDFWsFFQAHPYTIAWWCDdytgqATRAEFLVRCQRGFSDRFTRNFIGA---------NAFLSCIDGPY 330
                    57888888885.9****************889*********98776343344556777777777777777666665.........23333578888 PP

  FAD_binding_8 106 Ga 107
                    G+
     KKY22288.1 331 GV 332
                    86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.44s 00:00:01.01 Elapsed: 00:00:00.53
# Mc/sec: 2892.17
//
Query:       KKY22289.1  [L=158]
Description: hypothetical protein UCRPC4_g03312 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.31s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 1048.82
//
Query:       KKY22290.1  [L=210]
Description: hypothetical protein UCRPC4_g03313 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0042   16.6   0.9     0.0061   16.0   0.9    1.4  1  NBP1             Fungal Nap binding protein NBP1
  ------ inclusion threshold ------
      0.016   15.6   1.0      0.034   14.5   0.4    1.9  2  DUF3496          Domain of unknown function (DUF3496)
      0.019   13.9   8.3      0.023   13.6   7.6    1.6  1  Spc7             Spc7 kinetochore protein
        0.1   12.7   3.9        1.2    9.2   3.1    2.6  2  Cob_adeno_trans  Cobalamin adenosyltransferase
       0.15   12.4   0.4       0.15   12.4   0.4    3.3  3  Csm1_N           Csm1 N-terminal domain
        0.6   10.0   8.4      0.048   13.5   2.1    2.1  2  SPATA24          Spermatogenesis-associated protein 24
       0.84    9.7   4.1        5.1    7.2   0.2    2.9  3  DUF1664          Protein of unknown function (DUF1664)
        1.6    8.5   8.5       0.65    9.8   6.1    1.5  2  HeLo             Prion-inhibition and propagation
        1.9    8.9   6.9         18    5.8   0.9    3.4  3  DUF2564          Protein of unknown function (DUF2564)
        2.5    6.8  10.7       0.19   10.5   6.1    1.3  2  Fmp27_WPPW       RNA pol II promoter Fmp27 protein domain


Domain annotation for each model (and alignments):
>> NBP1  Fungal Nap binding protein NBP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.9   3.4e-06    0.0061     176     236 ..      64     124 ..      16     155 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.4e-06
        NBP1 176 rrvslrnnnleeDqvvlLqkkikklesklkdlekeLeitkkkLkFakeknkLleslLddan 236
                 r++ ++ ++l++D    L++++ ++ +  +d++ eLe +k++L Fa++ n+ l  +Ld+ n
  KKY22290.1  64 RSSLSAVQKLYADTRSTLERQLYQVRHSHSDTKRELEEAKRHLWFAQNENASLIRTLDTFN 124
                 2244678999****************************************99999999765 PP

>> DUF3496  Domain of unknown function (DUF3496)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       6.2   1.1e+04      66      82 ..      22      38 ..      16      47 .. 0.56
   2 ?   14.5   0.4   1.9e-05     0.034      10      69 ..      80     138 ..      60     149 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6.2
     DUF3496 66 lvekeqnrsllstlttr 82
                + +ke  +  +s l+tr
  KKY22290.1 22 QAQKEAAEDRASYLETR 38
                44444444444444444 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.9e-05
     DUF3496  10 dLeselskmKtsqedsnkteLEkykqlyleelkvrksLsnklnktnerLaevstkllvek 69 
                  Le +l++++ s+ d  k eLE+ k+    +++ + sL   l+  ne  + +++ ++ e+
  KKY22290.1  80 TLERQLYQVRHSHSDT-KRELEEAKRHLWFAQNENASLIRTLDTFNEAFTVLNNLMTSEE 138
                 599************8.**********999*************99999988887666555 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   7.6   1.3e-05     0.023     137     282 ..      39     180 ..      11     192 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.3e-05
        Spc7 137 legLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleek 235
                 ++ L ++  e+l++  +d+++L++ ++ l+++ + +   +++le++l + +  +    s +k eLee+++ l  +++e +++ + l++ +e  + l++ 
  KKY22290.1  39 INHLLQVQGEHLATHGKDRATLDEARSSLSAVQKLYADTRSTLERQLYQVRHSH----SDTKRELEEAKRHLWFAQNENASLIRTLDTFNEAFTVLNNL 133
                 4566777789999999******************************99999944....457************************************99 PP

        Spc7 236 ieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkaleelt 282
                 +++ + + +e+     +    l + +++++ e+ +++ ev+ l ++ 
  KKY22290.1 134 MTSEEMKTEEAVRGGPHRLADLIASRMVTKAELTTYQLEVSWLRQQV 180
                 99999999999998888888899999999999999999999988876 PP

>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.1   0.00069       1.2      30     110 ..      58     135 ..       5     184 .. 0.80
   2 ?    5.3   0.2     0.011        20      31     101 ..     119     186 ..     111     206 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00069
                      HHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHT.-BTCCG-S--HHHHHHHHHHHHHHHHHS--EESEEE CS
  Cob_adeno_trans  30 GtvDelnsaiglarallaeeeeelkeaLeeiqneLfdlgaelatpekkkekkkiteeeveelekeideleaelpplksfil 110
                      +t+De+ s +  +++l+a+++++l+++L ++ ++  d   el    + k++  + ++e + l + +d++++ ++ l++ + 
       KKY22290.1  58 ATLDEARSSLSAVQKLYADTRSTLERQLYQVRHSHSDTKRELE---EAKRHLWFAQNENASLIRTLDTFNEAFTVLNNLMT 135
                      699***********99999999********************4...44555666666677788888888877775554443 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.011
                      HHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHT.-BTCCG-S--HHHHHHHHHHHHHHHHH CS
  Cob_adeno_trans  31 tvDelnsaiglarallaeeeeelkeaLeeiqneLfdlgaelatpekkkekkkiteeeveelekeideleae 101
                      t+D +n a  ++ +l+++ee +++ea++   ++L dl a+  +++   e ++  + ev++l +++++l+a+
       KKY22290.1 119 TLDTFNEAFTVLNNLMTSEEMKTEEAVRGGPHRLADLIASRMVTK--AELTTY-QLEVSWLRQQVEALNAK 186
                      778888888888888888888999999999999999998876442..333333.34599999999999975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.7       0.7   1.2e+03      39      39 ..      74      74 ..      18     106 .. 0.60
   2 ?    1.2   0.4      0.26   4.6e+02      27      58 ..     111     142 ..      95     146 .. 0.75
   3 ?   12.4   0.4   8.2e-05      0.15      30      66 ..     160     196 ..     152     199 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.7
      Csm1_N 39 k 39
                +
  KKY22290.1 74 Y 74
                2 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.26
      Csm1_N  27 hENsvLsqkletkdqeiesLkeqlaeleekvk 58 
                 +EN  L ++l+t ++    L + + + e k +
  KKY22290.1 111 NENASLIRTLDTFNEAFTVLNNLMTSEEMKTE 142
                 89999999999998888888888777776665 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 8.2e-05
      Csm1_N  30 svLsqkletkdqeiesLkeqlaeleekvkeleerrkk 66 
                  v + +l t++ e++ L++q+++l++k  + +++r++
  KKY22290.1 160 MVTKAELTTYQLEVSWLRQQVEALNAKAVDDDQKRAE 196
                 45678999*******************9999888876 PP

>> SPATA24  Spermatogenesis-associated protein 24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   2.1   2.7e-05     0.048      45     109 ..      79     139 ..      37     147 .. 0.70
   2 ?   -1.0   0.2      0.79   1.4e+03      65     102 ..     166     204 ..     151     209 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.7e-05
     SPATA24  45 eavkkkleeEkveHaktkalLakEsEkLqfAlgeievLskqlerekkafekalgsvkekaarEsk 109
                   ++++l + +  H+ tk  L++ +  L fA++e   L +      + f++a+  +++  + E  
  KKY22290.1  79 STLERQLYQVRHSHSDTKRELEEAKRHLWFAQNENASLIR----TLDTFNEAFTVLNNLMTSEEM 139
                 34899999**************************665555....555666666666665555444 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.79
     SPATA24  65 LakEsEkLqfAlgeievLs.kqlerekkafekalgsvke 102
                 L   +  + +   ++e L+ k ++ ++k  e+a+ + ++
  KKY22290.1 166 LTTYQLEVSWLRQQVEALNaKAVDDDQKRAENAVHNARK 204
                 444444444555555555423445555555555555555 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.095   1.7e+02      49     100 ..      20      71 ..      11      75 .. 0.78
   2 ?    7.2   0.2    0.0028       5.1      39      82 ..      74     117 ..      67     135 .. 0.78
   3 ?    0.4   0.0      0.34   6.1e+02      84     108 ..     161     185 ..     144     205 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.095
     DUF1664  49 qleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseig 100
                 +l+  +e+ ++    L+ ri+++ + + e  ++  + ++ ++e+r+ ls+++
  KKY22290.1  20 DLQAQKEAAEDRASYLETRINHLLQVQGEHLATHGKDRATLDEARSSLSAVQ 71 
                 5555566666666778999999999999999999999999999999888876 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0028
     DUF1664  39 lsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeis 82 
                  +d  +++ +ql qv +s ++tkr+L++   ++   ++e++ ++
  KKY22290.1  74 YADTRSTLERQLYQVRHSHSDTKRELEEAKRHLWFAQNENASLI 117
                 57888999999999999999999999988777777777666655 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.34
     DUF1664  84 eikeevtevredlseigedvesvke 108
                  +k+e+t+ + ++s ++++ve++++
  KKY22290.1 161 VTKAELTTYQLEVSWLRQQVEALNA 185
                 4555555555566666665555543 PP

>> HeLo  Prion-inhibition and propagation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   6.1   0.00036      0.65      66     189 ..      22     146 ..       6     167 .. 0.78
   2 ?   -1.6   0.0       1.2   2.1e+03      86     104 ..     177     195 ..     155     209 .. 0.49

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00036
                 .......HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CGG.......G-B--GGGS-HHHHHHH..HHHHHHHHHS----S-----EEE-SHHHHHHHH CS
        HeLo  66 d.destrralvleileqiealleefeklqeryglklekqdasssslalssereksfraefellk.rlmrkaakkrqkrtslpkrlrWaivdkkkfeelv 162
                 + +++ +++ ++ + ++i++ll+   ++ + +g++++  d++ ssl++ ++  ++ r+++e+   ++    ++++ +  + ++ l++a  +++++ + +
  KKY22290.1  22 QaQKEAAEDRASYLETRINHLLQVQGEHLATHGKDRATLDEARSSLSAVQKLYADTRSTLERQLyQVRHSHSDTKRELEEAKRHLWFAQNENASLIRTL 120
                 344555567999************************999999888888888888888888877755444455555556666667777777888899999 PP

                 HHHHHHHHHHHHTTT-H..HHHHHHHH CS
        HeLo 163 kdlkelvdsLeeLlpasqqqrvqrlvr 189
                 + + e  + L++L+ ++ +++++++vr
  KKY22290.1 121 DTFNEAFTVLNNLMTSE-EMKTEEAVR 146
                 999999999*****999.677777765 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHH--CGG CS
        HeLo  86 leefeklqeryglklekqd 104
                  ++ e+l+++   +++k+ 
  KKY22290.1 177 RQQVEALNAKAVDDDQKRA 195
                 3333333333333333322 PP

>> DUF2564  Protein of unknown function (DUF2564)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.9    0.0099        18      22      50 ..      51      79 ..      44     104 .. 0.77
   2 ?    1.4   0.3      0.24   4.2e+02      23      52 ..      77     106 ..      69     126 .. 0.77
   3 ?    4.4   0.3     0.028        50      32      47 ..     193     208 ..     157     209 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0099
     DUF2564 22 ATmsmdpdqlesAtqAiedAreqlssaee 50
                AT+ +d+ +l++A  ++ + ++ +++ ++
  KKY22290.1 51 ATHGKDRATLDEARSSLSAVQKLYADTRS 79
                9****************999877766655 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.24
     DUF2564  23 TmsmdpdqlesAtqAiedAreqlssaeeha 52 
                 T+s  + ql +  ++  d + +l++a++h 
  KKY22290.1  77 TRSTLERQLYQVRHSHSDTKRELEEAKRHL 106
                 777788888888888899999999999885 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.028
     DUF2564  32 esAtqAiedAreqlss 47 
                 + A++A+++Ar+ +++
  KKY22290.1 193 KRAENAVHNARKRFKR 208
                 78*********99875 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   6.1   0.00011      0.19     170     289 ..      22     134 ..       9     146 .. 0.83
   2 ?   -2.9   0.1       1.3   2.3e+03     213     320 ..     181     187 ..     150     208 .. 0.43

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00011
  Fmp27_WPPW 170 rvqkelleeRleeleeqiekleekleelelksekedeelkeeieelekeikelkeklefletlledlkeseesseeeeskskelsaastsesfseldel 268
                 + qke +e+R++ le++i++l +  +e+  ++ k++++l+e  ++l+   k + + +++le+ l ++++s++      ++++el++a+++  f+++++ 
  KKY22290.1  22 QAQKEAAEDRASYLETRINHLLQVQGEHLATHGKDRATLDEARSSLSAVQKLYADTRSTLERQLYQVRHSHS------DTKRELEEAKRHLWFAQNEN- 113
                 679999999999999999999998888888888878888888888888888888888888888888888876......56778888888888888888. PP

  Fmp27_WPPW 269 asseesaseFknRFiihniql 289
                 as  +   +F++ F + n ++
  KKY22290.1 114 ASLIRTLDTFNEAFTVLNNLM 134
                 9999************99766 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.3
  Fmp27_WPPW 213 eelekeikelkeklefletlledlkeseesseeeeskskelsaastsesfseldelasseesaseFknRFiihniqlkwnnslRnillrylhqvsqrrg 311
                 e+l                                                                                                
  KKY22290.1 181 EAL------------------------------------------------------------------------------------------------ 183
                 111................................................................................................ PP

  Fmp27_WPPW 312 fvyymsrka 320
                      + ka
  KKY22290.1 184 -----NAKA 187
                 .....1111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1651  (0.0920854); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:00.56
# Mc/sec: 1127.11
//
Query:       KKY22291.1  [L=142]
Description: hypothetical protein UCRPC4_g03314 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.031   13.2   1.5      0.038   12.9   1.5    1.0  1  LMBR1     LMBR1-like membrane protein
      0.036   14.3   0.2      0.039   14.1   0.2    1.1  1  DUF1779   TATA-box binding


Domain annotation for each model (and alignments):
>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.5   4.2e-06     0.038     210     292 ..      21     110 ..      17     125 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-06
       LMBR1 210 aklntekeeaereledllkevkklrksisesdplrkyleeilkkvPeeiaeklks........nenkteeslaklekqlikalqkrertek 292
                 ++++ + ++++r+l+  ++ev+ l+++ +e++ lr++l++    + ++++++l+         ++++  +++a l + l  ++q+ er+ +
  KKY22291.1  21 MTIQLDSDQMQRDLDLAVEEVESLKEQREEQH-LRHMLDQTTWASCTDVQQQLNIainnnkalGDQAGRNTIAALLETLEDQRQRLERRTT 110
                 67888899999*****************9999.**********999999999988776666665555555666666666666666666655 PP

>> DUF1779  TATA-box binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   4.4e-06     0.039       3      80 ..      16      92 ..      14     136 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.4e-06
                EEEEEEEEEE---H..HHHHHHHHHHHHHEEEEE--SS.EEEEEEEEEETTTTEEEEEEEEEE..SS-SS--EEEEEE CS
     DUF1779  3 eWsvlakenlsvvelkklaeqlakelkaeektekkesedeekitgikvegkndsdekvsivatktekkkdeetyllye 80
                +Wsvl++ +l+  +++++++  ++e++   k++++e++  ++ +++++ + +d +++++i +  ++   d+    ++ 
  KKY22291.1 16 NWSVLMTIQLDSDQMQRDLDLAVEEVESL-KEQREEQHLRHMLDQTTWASCTDVQQQLNIAINNNKALGDQAGRNTIA 92
                7****************************.8889999999********************999555444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1308  (0.0729544); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.45s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 847.63
//
Query:       KKY22292.1  [L=1345]
Description: hypothetical protein UCRPC4_g03315 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-15   56.2   8.0    5.6e-09   36.2   0.1    4.3  3  Peptidase_C48  Ulp1 protease family, C-terminal catalytic dom
  ------ inclusion threshold ------
      0.046   13.5   3.4       0.11   12.3   3.4    1.6  1  dCache_1       Cache domain
       0.13   12.3   3.7       0.34   11.0   3.7    1.6  1  DUF1664        Protein of unknown function (DUF1664)
       0.14   12.2   3.0        0.3   11.1   3.0    1.5  1  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 


Domain annotation for each model (and alignments):
>> Peptidase_C48  Ulp1 protease family, C-terminal catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   3.3      0.97   4.4e+03      29      86 ..     794     852 ..     774     854 .. 0.66
   2 !   36.2   0.1   1.3e-12   5.6e-09      82     183 ..    1031    1115 ..    1002    1134 .. 0.86
   3 !   20.2   0.0   9.7e-08   0.00043      81     202 ..    1234    1331 ..    1223    1344 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.97
                    EEE--THHHHHHC..........SS.......T.CHCHHHCTTCCCCCS..-GGG-SEE CS
  Peptidase_C48  29 vhflntffvskLtkavkdfkknkskkkfkeskk.kdlyngvrrwtrkvnkedlfdkdii 86 
                    +  ++   ++  tk+ +++k ++ k++ k+++  k+  ++ +++ +k++++   +kd+i
     KKY22292.1 794 ILTVRIVQLPSSTKDTNKKKTASTKDTNKKKTAsKKDTTKKKTASKKNTTKAASKKDTI 852
                    55555556677787888888888888877777777777777777777666777777766 PP

  == domain 2  score: 36.2 bits;  conditional E-value: 1.3e-12
                     G-SEEEEEEEC.TTEEEEEEEETCCCEEEEE-TTS-SSH.HHHHHHHHHHHHHHHHHCCCCCSTT-.GGGEEEEEEE-----SSCCCHHHHHHH CS
  Peptidase_C48   82 dkdiiyiPinedgkHWvlliinlpdktililDSlislhtvkkenrpinnlkpyLleealkkkqkqldltpfeierltkvpqqknsgDCGiyvlk 175 
                     ++ + ++P++ +g+HWvl   +  ++ i++lDS +   t        ++l +y+++ +           p+e+  + ++ qq   +DCG++vl 
     KKY22292.1 1031 RTRHALVPMHVNGNHWVLFLLDYDRREIWMLDSASMVST--------HELGSYMIRGF---------GWPVENLIAFPCQQQIGQYDCGLFVLA 1107
                     567899*********************************........99********8.........4477888888999************** PP

                     HHHHHHCT CS
  Peptidase_C48  176 fiellaeg 183 
                     +++ +ae 
     KKY22292.1 1108 NARSMAEH 1115
                     **999886 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 9.7e-08
                     GG-SEEEEEEEC.TTEEEEEEEETCCCEEEEE-TTS-SSH.HHHHHHHHHHHHHHHHHCCCCCSTT-.GGGEEEEEEE-----SSCCCHHHHHH CS
  Peptidase_C48   81 fdkdiiyiPinedgkHWvlliinlpdktililDSlislhtvkkenrpinnlkpyLleealkkkqkqldltpfeierltkvpqqknsgDCGiyvl 174 
                     +d+++i++  n +g+HWvl   +  + ++l+ DS++  ++            + +++++      +  l  ++  +l +  qq n  DCGiyv+
     KKY22292.1 1234 TDTKHILTCYNMGGSHWVLFYLDFGRAQVLYVDSMAWDTS------------SIIAKRI-----ADR-LGGWSTSTL-TSEQQGNLIDCGIYVI 1308
                     6899********************************9999............3333333.....333.588888888.999************* PP

                     HHHHHHHCTHHCHHHHHSS.HHHHHHHH CS
  Peptidase_C48  175 kfiellaegapqessvtltekdvdsfrk 202 
                      +++ l+   +        +  v+++r 
     KKY22292.1 1309 ANAKALLSSGEVAR-----DIKVEEVRL 1331
                     ****9988777663.....345555555 PP

>> dCache_1  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.4   2.4e-05      0.11       3      62 ..     624     689 ..     623     697 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.4e-05
    dCache_1   3 ieeqaeeqllglaeqlanniedvldslenlaetl......asnpslqdlleepnraneasreslqa 62 
                 +++q+e+q++++++q++++++++l+++ +++e +      a ++ lq+l  ++++ +e+s++s+ +
  KKY22292.1 624 VQQQVEQQVEQQMQQVKQQLDRKLNNIGTSLESFfenifrAHDEKLQRLDAKIDAIKEQSQASASN 689
                 69************************9999999944444444455555555555445555555555 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.7   7.5e-05      0.34      45     104 ..     623     684 ..     618     691 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.5e-05
     DUF1664  45 svskqle.qvseslaatkrhLssridrvdkkldeqke.iskeikeevtevredlseigedve 104
                 +v +q+e qv ++++++k++L +++++++++l++  e i ++ +e+++++  ++++i+e+++
  KKY22292.1 623 QVQQQVEqQVEQQMQQVKQQLDRKLNNIGTSLESFFEnIFRAHDEKLQRLDAKIDAIKEQSQ 684
                 6788887258899********************9866267889999***********99987 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.0   6.7e-05       0.3      29      82 ..     629     682 ..     619     693 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.7e-05
  Baculo_PEP_C  29 nvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdt 82 
                   + q+  q+++ +++++++Ln++ ++l+s  +++ ++ d+ l++L++++ a++++
    KKY22292.1 629 EQQVEQQMQQVKQQLDRKLNNIGTSLESFFENIFRAHDEKLQRLDAKIDAIKEQ 682
                   568899999999999999*****************************9999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2848  (0.158849); expected 358.6 (0.02)
Passed bias filter:                      766  (0.0427241); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.27u 0.38s 00:00:01.65 Elapsed: 00:00:00.59
# Mc/sec: 6903.57
//
Query:       KKY22293.1  [L=355]
Description: hypothetical protein UCRPC4_g03316 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.011   16.1   0.1          2    8.9   0.1    3.2  3  UPF0184      Uncharacterised protein family (UPF0184)
      0.032   14.3   0.1       0.13   12.3   0.0    1.9  2  DUF1664      Protein of unknown function (DUF1664)
      0.063   12.7   0.8       0.11   11.9   0.8    1.3  1  DUF3552      Domain of unknown function (DUF3552)
        2.5    8.4   9.1        6.6    7.0   9.1    1.7  1  DUF755       Domain of unknown function (DUF755)
        5.5    7.1   5.7         13    5.9   0.7    3.2  2  Prefoldin_3  Prefoldin subunit


Domain annotation for each model (and alignments):
>> UPF0184  Uncharacterised protein family (UPF0184)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00055         2      20      59 ..      29      68 ..      15      71 .. 0.92
   2 ?    3.6   0.0     0.025        90      35      59 ..      69      93 ..      66     106 .. 0.82
   3 ?   -0.4   0.0      0.43   1.5e+03      50      78 ..     212     240 ..     205     243 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00055
     UPF0184 20 edefgeeEyeainsmLDqinsaLDalEernDdlnskLrEL 59
                ++++ e++++++ + L  i+    + E+r D+  ++L E 
  KKY22293.1 29 QQDYTEKNFADVRNRLSLISNQFSQQEKRIDHRVGQLGER 68
                68999********************************985 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.025
     UPF0184 35 LDqinsaLDalEernDdlnskLrEL 59
                +D + +  D++ +r D +++ L +L
  KKY22293.1 69 IDHVGARFDHVGDRVDRVEGELYNL 93
                7999999*************99887 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.43
     UPF0184  50 DdlnskLrELlesnRqiRlefaeqldeaP 78 
                 Dd++ k+ E  +  R + +  +++  ++P
  KKY22293.1 212 DDIQRKIDEYQNTTRTVTKRARAEEPKTP 240
                 99999999999999999999998888887 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.7e-05      0.13      44     104 ..      38      98 ..      31     106 .. 0.61
   2 ?   -1.7   0.0       0.8   2.9e+03      68      86 ..     211     229 ..     200     239 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.7e-05
     DUF1664  44 esvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedve 104
                 ++v ++l  +s++ +++ +++ +r+ ++++++d++ +   ++ + v++v+++l +++  ++
  KKY22293.1  38 ADVRNRLSLISNQFSQQEKRIDHRVGQLGERIDHVGARFDHVGDRVDRVEGELYNLSAILR 98 
                 4455566666666666666666666666666666666666666666666666666655554 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.8
     DUF1664  68 idrvdkkldeqkeiskeik 86 
                 +d +++k+de +++++ ++
  KKY22293.1 211 VDDIQRKIDEYQNTTRTVT 229
                 5666666666666665554 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.8     3e-05      0.11      60     135 ..      24      99 ..       9     107 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3e-05
     DUF3552  60 eeihklreelekelkerrnelqrlekRllqkeetLdrkeeslekkeesleekekelkqkeqsleekeeeleelvee 135
                  e  ++++ +ek++ + rn l+ + ++  q+e+++d++  +l ++ +++ ++ +++  + +++e +  +l++++++
  KKY22293.1  24 KEFIRQQDYTEKNFADVRNRLSLISNQFSQQEKRIDHRVGQLGERIDHVGARFDHVGDRVDRVEGELYNLSAILRN 99 
                 5677888999***************************************999999999999998888777776554 PP

>> DUF755  Domain of unknown function (DUF755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   9.1    0.0019       6.6      78     122 ..     310     354 ..     292     355 .] 0.85

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0019
      DUF755  78 thkkkkkksrnvssrsakkksakkrkksssSSssssssssssseS 122
                  + +++k sr+ s   ak k++ ++ +   SSsss ss ssss S
  KKY22293.1 310 ASPSTSKGSRRISGDTAKTKHTSNKGTVPFSSSSSPSSPSSSSPS 354
                 566789999**************9999999999999999999877 PP

>> Prefoldin_3  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.4     0.057     2e+02      60      96 ..      52      88 ..       7      91 .. 0.58
   2 ?    5.9   0.7    0.0036        13      70      97 ..     211     238 ..     154     240 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.057
  Prefoldin_3 60 qgvtrskqQvvdlisrRiDYVkqniktlekrleaaen 96
                 ++ ++  +  v  +  RiD V    + +  r++  e 
   KKY22293.1 52 SQQEKRIDHRVGQLGERIDHVGARFDHVGDRVDRVEG 88
                 2334555555667777888887777777777766665 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0036
  Prefoldin_3  70 vdlisrRiDYVkqniktlekrleaaenk 97 
                  vd i+r+iD  ++  +t++kr +a+e k
   KKY22293.1 211 VDDIQRKIDEYQNTTRTVTKRARAEEPK 238
                  7889*********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.35s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 2158.96
//
Query:       KKY22294.1  [L=340]
Description: hypothetical protein UCRPC4_g03317 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.74s 00:00:01.38 Elapsed: 00:00:00.64
# Mc/sec: 1613.56
//
Query:       KKY22295.1  [L=216]
Description: hypothetical protein UCRPC4_g03318 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.049   14.4   0.1      0.091   13.5   0.1    1.5  1  Occludin_ELL  Occludin homology domain


Domain annotation for each model (and alignments):
>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   5.1e-06     0.091      19     100 ..      74     158 ..      57     159 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-06
  Occludin_ELL  19 keYkeYkelhaeleevskkfseLe....relkelkegskeykkieeeilqeykklkkdpeyqekkkrceyLkekLshiKklikeyd 100
                   ++YkeY+++ + l+ +++ +s       ++   +++ s+  ++ie+ ++   +   + p    kk+  ++L+ +L+h++ +i  y+
    KKY22295.1  74 QKYKEYMDIDEALHLIKDCISTCCtlglKDAWVFAQFSSACEEIEHWMCTAINAT-QRPGVSYKKHSETVLRLRLTHLRDRIVVYK 158
                   68********99988888777665444666667788888999**99977777766.8999999*******************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.61s 00:00:01.14 Elapsed: 00:00:00.56
# Mc/sec: 1151.51
//
Query:       KKY22296.1  [L=232]
Description: hypothetical protein UCRPC4_g03319 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1551.33
//
Query:       KKY22297.1  [L=1349]
Description: putative conserved serine-rich protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1593  (0.0888505); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.83u 0.50s 00:00:02.33 Elapsed: 00:00:00.80
# Mc/sec: 5116.87
//
Query:       KKY22298.1  [L=306]
Description: putative integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.96    9.6   5.6       0.38   10.8   2.8    1.7  1  Na_Pi_cotrans  Na+/Pi-cotransporter


Domain annotation for each model (and alignments):
>> Na_Pi_cotrans  Na+/Pi-cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.8   2.1e-05      0.38      54     112 ..     103     169 ..      87     184 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.1e-05
  Na_Pi_cotrans  54 vmvvglvnaglltlkqaigvilGaniGttvtaqllsl........alklsslalllllvgvllllfs 112
                      ++ ++na+ ++++qa     G+ni t +   ++ +        + + ++  +ll+++g+l++ ++
     KKY22298.1 103 TWTLHFANAQCINVAQAGYANAGTNIATEIAIIIVPIpvvrtlklTGRKKASLYLLFGAGILVIAVA 169
                    56789******************************98999*88763333444445555566544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.35s 00:00:00.93 Elapsed: 00:00:00.55
# Mc/sec: 1679.24
//
Query:       KKY22579.1  [L=545]
Description: putative transposase tan1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-35  122.2   2.4    1.9e-35  122.1   0.3    2.1  2  DDE_1        DDE superfamily endonuclease
    1.2e-09   38.0   0.2    5.7e-09   35.9   0.0    2.3  3  HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
    2.3e-06   27.4   0.0    0.00032   20.5   0.1    2.7  2  DDE_3        DDE superfamily endonuclease
     0.0021   17.7   0.0     0.0044   16.7   0.0    1.6  1  HTH_psq      helix-turn-helix, Psq domain
  ------ inclusion threshold ------
      0.013   15.6   0.1       0.85    9.8   0.0    3.4  3  HTH_28       Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.38   1.4e+03      54      71 ..     139     156 ..     114     163 .. 0.82
   2 !  122.1   0.3   5.2e-39   1.9e-35       2     175 .]     200     368 ..     199     368 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.38
       DDE_1  54 ltssifeeWLkvfdkrle 71 
                 ++ + ++eW+  f+k++ 
  KKY22579.1 139 TSPEALREWFTLFQKTIT 156
                 5678899*******9987 PP

  == domain 2  score: 122.1 bits;  conditional E-value: 5.2e-39
       DDE_1   2 erltvllcanaagsekLkplvigkaksprafkngektkkkldveyksnrkawltssifeeWL.kvfdkrleaekrkilLlldssrshetvel.leselq 98 
                 ++++ +++ +aa+++ L+plvi+k++s+++ ++   +++  d+++ s++++w+++++   WL  +f++++ +  rk lL++d+++sh  +e+  +++++
  KKY22579.1 200 REWVSIIETIAADGRLLQPLVIFKGQSLQSTWF--PKDSIPDWKFISSDNGWTSNNVALYWLqDIFIPQTSSALRKRLLIIDGHKSHCSLEFmWKCHQN 296
                 7899*****************************..889999************************************************9999****** PP

       DDE_1  99 niklvflPassasllqPldqgvvselKarYrrqllqalleeqnrlskeqkkltlldalkfikkAwn.avsketiksaf 175
                 +i +++lPa+s+++ qPld  ++s+lK+ Yr+q+  a+   +++  k        ++++f++ A+  a++ +ti+s++
  KKY22579.1 297 QIIVLYLPAHSSHITQPLDLTCFSPLKRAYRAQIAAAASFDDSAPIK------KIQFIQFYESARLqALKTSTIRSGW 368
                 **********************************9998877777777......79**********99**********9 PP

>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   1.6e-12   5.7e-09       2      62 ..      63     123 ..      62     126 .. 0.92
   2 ?   -2.5   0.0       1.6   5.6e+03       6      16 ..     142     152 ..     142     161 .. 0.70
   3 ?   -3.2   0.0       2.5   9.1e+03       6      24 ..     441     458 ..     440     459 .. 0.73

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1.6e-12
                  HHHHHHHHHHHHHHC-CT---SCHHHHHHHHHHHHHSSSCT-TT-S--CHHHHHHHHHT.S- CS
  HTH_Tnp_Tc5   2 pelEkaLleWirqlrergipitgelirekAqelaslaadlgepdfkaSkgWldrFkkRh.gl 62 
                  +e+E+ L++Wi +l+++g  +  +++re+ q ++  +++ + p +  +++W+ +Fk+R+ ++
   KKY22579.1  63 QEQEQMLAQWILDLDAQGHAPAPAQVREMVQIIR-ISSGTPQPIPPIGQNWVTHFKQRNpQI 123
                  69*******************************6.7789999****************9665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.6
                  HHHHHHHHHHC CS
  HTH_Tnp_Tc5   6 kaLleWirqlr 16 
                  +aL+eW+   +
   KKY22579.1 142 EALREWFTLFQ 152
                  68999998765 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2.5
                  HHHHHHHHHHC-CT---SC CS
  HTH_Tnp_Tc5   6 kaLleWirqlrergipitg 24 
                  ++++ Wi+  + +g+ +++
   KKY22579.1 441 RSIRTWISKVQ-KGFGLSH 458
                  67889999955.8877776 PP

>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.011        41       2      50 ..     165     215 ..     164     229 .. 0.88
   2 !   20.5   0.1   8.8e-08   0.00032      60     119 ..     250     310 ..     240     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.011
       DDE_3   2 vvfiDEsgfqlgt.vrrrawakkGkrer.leeygrrgrvnligaldekggl 50 
                 ++ +DE+g+ lg+ + +   +   +  + +++ ++r+ v++i  +  +g+l
  KKY22579.1 165 MYNMDETGLALGVgRNQFVLGNAERPQTyIKTPNNREWVSIIETIAADGRL 215
                 6789*********9999999999999888*************999988875 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 8.8e-08
       DDE_3  60 naedfae.flerlletalqak..kivlilDnasiHkseslrelveeeadrlellylPpySPel 119
                 +++++a  +l+++  +++++   k  li+D+++ H s +++++ ++   ++ +lylP++S++ 
  KKY22579.1 250 TSNNVALyWLQDIFIPQTSSAlrKRLLIIDGHKSHCSLEFMWKCHQ--NQIIVLYLPAHSSHI 310
                 55566666999999999998899***********************..************985 PP

>> HTH_psq  helix-turn-helix, Psq domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.2e-06    0.0044       3      40 ..      10      48 ..       8      52 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.2e-06
     HTH_psq  3 ealaaAleavvnGk.mSirkAArkYgiPrsTLwrrkrgk 40
                 ++++Al a+ n +  Sir  Ar + iP sTL++r++g+
  KKY22579.1 10 QTIQLALTAYFNNEfPSIRACARAFKIPESTLRSRLNGT 48
                57999******8888********************9996 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00024      0.85       8      41 ..      18      53 ..      10      55 .. 0.82
   2 ?   -0.0   0.0      0.27   9.8e+02      18      32 ..     133     147 ..     129     152 .. 0.91
   3 ?   -0.2   0.0      0.32   1.1e+03      27      40 ..     441     453 ..     437     460 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00024
      HTH_28  8 llaaGh..svreaArelgisrrtvyrWikryeegGi 41
                ++ + +  s+r++Ar++ i ++t+++ ++  +e G+
  KKY22579.1 18 AYFNNEfpSIRACARAFKIPESTLRSRLNGTQESGF 53
                555566689*****************9998877776 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.27
      HTH_28  18 aArelgisrrtvyrW 32 
                 +Ar+ g+s++ ++ W
  KKY22579.1 133 TARIQGTSPEALREW 147
                 89***********99 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.32
      HTH_28  27 rtvyrWikryeegG 40 
                 r+++ Wi++ ++ G
  KKY22579.1 441 RSIRTWISKVQK-G 453
                 99*****99777.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3573.97
//
Query:       KKY22580.1  [L=659]
Description: putative c6 finger domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-56  191.5   0.3      3e-56  190.9   0.3    1.2  1  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.9   0.3   1.7e-60     3e-56       6     383 ..     172     658 ..     171     659 .] 0.82

  Alignments for each domain:
  == domain 1  score: 190.9 bits;  conditional E-value: 1.7e-60
  Fungal_trans_2   6 yldnvapllspvpes.snpfrkvllplalsnkallhallalsafhlqskgpkdslereakrykslalkelqealaelsstlsrnekykdiLaaiL 99 
                     ++++++ +ls+ +   +np+r+++ pl ++++al ha+ +l++fh          +re+  +++++++++ ++++ l+  ls n++ +  La++L
      KKY22580.1 172 FNEDTCGILSVKNGDmENPWRTMIWPLTQESEALSHAISSLTSFHI---------SRESPDLRVQGIRHMMKSIKSLNVGLS-NTRTDISLATTL 256
                     8999*******99999******************************.........888888888888888888888888888.8888888***** PP

  Fungal_trans_2 100 llcsieissgdvsdwrvhLeaatsliksrggs....kasssslsskarfllrifayldilssttlgrgpsfpseeyekllenkkeesdsgldplm 190
                     +l ++e+ +   s   +hL++a+sl+k+ + s     as+ s+ +++rfl++  +y+d+++++t+ +      +  e l++ ++ +++s++dpl+
      KKY22580.1 257 VLAFAESWDQHISTGIQHLRGAKSLVKHALVShqnqGASDLSQMPRLRFLINTWIYMDVIARLTSVTDDDN-GDLEEILFSMSNPTETSEVDPLL 350
                     ******99999888889***************9988888888888*********************44443.33333444446999********* PP

  Fungal_trans_2 191 GcsnslilliseisrLarekrsarkdseleplsileeaseleqrllswkprssdlepdldeterasslskdltelfrlaaliylyrlvlglppss 285
                     Gc  sl++li+++++L   +r++++     +l+i ++asel + l++w+ +++ l ++ d+++++ + s + +e++r+a+l+yl+++v+++p++ 
      KKY22580.1 351 GCAASLFPLIGSVASLIGMVRRTESN----DLNIISRASELKTLLEQWQAPDHHLFENPDDKDSKVQHSIQTAEAYRYATLLYLHQAVPEIPSK- 440
                     **************************....*********************999999999999999988555*********************9. PP

  Fungal_trans_2 286 pevqelvkkllellellpsspvaiasLlWplFiaGceavdeddRdfvrrrleeleqsrl..gnvrrarqvleevWrrrdd............... 363
                      +   l +++l+ll+++p++++a +  ++pl+ a cea ++ dR+f+ +r+ ++  srl  gn+ ++ +v++evWrrrd                
      KKY22580.1 441 -HAGALAQDVLKLLATVPTTSRATIIHIYPLLAASCEARSDGDRKFCMDRWTAIT-SRLriGNADKCVDVVKEVWRRRDAyeaekaerlrmrern 533
                     .9********************9********************************.66666******************8666666666666666 PP

  Fungal_trans_2 364 ............................................................................................... 363
                                                                                                                    
      KKY22580.1 534 rlgmampqpflgnpgdkrkslssedavdmnaflasglppgldtfdghfhskrralvgsgsrpipgrvsaltntpnmpgqamglmptsmrnrssds 628
                     66666666666666666666666666666666666666666666666666666666666666666666666655555555555555555554444 PP

  Fungal_trans_2 364 .gee..........kidWrdvmekkgwelll 383
                      + e          + +W  vm++ +we+ll
      KKY22580.1 629 pT-EnldfeytvrgHLHWVGVMNDWRWEILL 658
                     41.0345555555566777777666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.51
# Mc/sec: 3903.81
//
Query:       KKY22581.1  [L=118]
Description: putative ethanolamine utilization protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-09   37.6   0.0      2e-09   37.4   0.0    1.0  1  EutQ      Ethanolamine utilisation protein EutQ
    5.3e-09   35.6   0.0    7.1e-09   35.2   0.0    1.2  1  Cupin_3   Protein of unknown function (DUF861)
    1.1e-05   25.0   0.0    1.6e-05   24.5   0.0    1.4  1  Cupin_2   Cupin domain
  ------ inclusion threshold ------
      0.015   14.9   0.0       0.02   14.5   0.0    1.1  1  Cupin_1   Cupin


Domain annotation for each model (and alignments):
>> EutQ  Ethanolamine utilisation protein EutQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   4.5e-13     2e-09      67     138 ..      30     104 ..      14     112 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 4.5e-13
        EutQ  67 dlvtl.eeskrlgaGlmemket.tfdwtlnydeidyvieGrldvl.idGrkvvaeaGdviliPkgskiefsvtde 138
                 dl+t  +e k ++ Gl +++    + +  +y e+ +++eG++ +    G+kv a+aGd  + Pkgs i f ++ +
  KKY22581.1  30 DLYTStDEDKPITSGLYKFEAGkELVYEYTYHEMKIILEGEVYISdQTGQKVHAKAGDSFYFPKGSIITFDTPTK 104
                 888852678889*****9986425777889**************8356***********************9976 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   1.6e-12   7.1e-09       3      62 ..      37      97 ..      35     107 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.6e-12
                CCTCCEEEEEEEECEE.EEECESSEEEEEEEECEEEEEETTTEEEEEETTEEEEE-TTEEE CS
     Cupin_3  3 elgvfswgiwectpGk.frltyeedEfcyileGevkvtpeggetvelraGDlvvlpkglsg 62
                e++  + g+ + ++Gk +  +y+++E+  ileGev + ++ g++v+ +aGD++++pkg+  
  KKY22581.1 37 EDKPITSGLYKFEAGKeLVYEYTYHEMKIILEGEVYISDQTGQKVHAKAGDSFYFPKGSII 97
                566666677777777723346777**********************************844 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   3.7e-09   1.6e-05      18      53 ..      60      95 ..      44     109 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 3.7e-09
                SEEEEEEEEESEEEEE.ECTEEEEEETTEEEEE-TT- CS
     Cupin_2 18 gedeffyVleGegelt.vdgeeveleaGdsvyfpagt 53
                ++ e+ ++leGe+ +    g++v+ +aGds+yfp+g 
  KKY22581.1 60 YH-EMKIILEGEVYISdQTGQKVHAKAGDSFYFPKGS 95
                55.788**********899****************96 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.4e-06      0.02      53     112 ..      59     110 ..      52     117 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.4e-06
                 SS-EEEEEEESEEEEEEEETTSS.EEEEEE.EETTEEEEE-TT-EEEEEEESSSSEEEEEE CS
     Cupin_1  53 nateiayvlqGegrvgfvvpgngnrdfhkk.lreGdvfvvPaglvhfqynsgdepavaivv 112
                  ++e+ ++l+Ge++    ++++   + +k+  ++Gd f++P+g +  +     ++++a++v
  KKY22581.1  59 TYHEMKIILEGEVY----ISDQ---TGQKVhAKAGDSFYFPKGSIITFDTP--TKGLAFFV 110
                 5789999*******....5554...67788899**********99988777..66666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 790.21
//
Query:       KKY22582.1  [L=293]
Description: putative zn 2cys6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-25   89.2   0.0    3.2e-25   88.6   0.0    1.3  1  Pyridox_oxase_2  Pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> Pyridox_oxase_2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.0   1.8e-29   3.2e-25       2      99 ..      14     137 ..      13     138 .. 0.95

  Alignments for each domain:
  == domain 1  score: 88.6 bits;  conditional E-value: 1.8e-29
                      -TTHHHHHHHHHHTT-GGGGEEEEEEE-T.TS-EEEEEEE---B-TT.................SS-.EEEEEETTSHHHHHHH.......... CS
  Pyridox_oxase_2   2 apWrsllesalkknkkkkstefqlaTvdeeegkPrvRtvvfRgfleekke..............esdvltfttDvrseKvkqles......... 72 
                      apW++l++++++k    +s+ef+laTv+ ++g Pr+Rt+++Rgf++++                 sd+ tfttD+r++Kv ++ +         
       KKY22582.1  14 APWKPLFATHVSK---LASPEFSLATVT-SKGIPRTRTCIHRGFFASPLPenphnkhppnphvyDSDCPTFTTDARMSKVYDIFAsgpgkgsle 103
                      89**********9...************.6999*************97735899**************************************** PP

                      .......H--EEEEEEEETTTTEEEEEEEEEEEE CS
  Pyridox_oxase_2  73 .......snaaveavfylketreQfRisGkafvi 99 
                                +vea++++k+t+ Q+Ri Gk+++i
       KKY22582.1 104 qsrsgsgGGGHVEACYWVKDTMCQWRIIGKCWLI 137
                      *****98899*********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.34s 00:00:00.89 Elapsed: 00:00:00.52
# Mc/sec: 1707.31
//
Query:       KKY22583.1  [L=153]
Description: putative nascent polypeptide-associated complex subunit beta [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-24   85.2   0.4    4.2e-24   84.3   0.4    1.5  1  NAC       NAC domain
  ------ inclusion threshold ------
      0.024   14.2   0.1      0.028   14.0   0.1    1.2  1  PEPCK_N   Phosphoenolpyruvate carboxykinase N-terminal domain


Domain annotation for each model (and alignments):
>> NAC  NAC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.4   4.7e-28   4.2e-24       1      57 []      36      92 ..      36      92 .. 0.99

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 4.7e-28
         NAC  1 ekKlrkalkklglkeipgieeVtirksdgkvlvfdnPkVqkspgsntyvvfGeaeek 57
                +kKl+ +lkkl++++i+ ieeV+++k+dg+v++f+nP Vq+s +snt+ ++G+ eek
  KKY22583.1 36 DKKLQTTLKKLNVQTIQAIEEVNMFKEDGNVIHFSNPRVQASVPSNTFCITGKGEEK 92
                8******************************************************97 PP

>> PEPCK_N  Phosphoenolpyruvate carboxykinase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   3.1e-06     0.028      25      75 ..      43     100 ..      24     132 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.1e-06
                 HHHHHHHHHHTTSEEE-TTSBS-EEE---TTSSS--GGGEEEE-SSHHHH.......- CS
     PEPCK_N  25 neellkelvekgeliklekypnsylarsdpkDvARvesrTfictekeeda.......g 75 
                  ++l  + +++ e++++ k +++++++s+p+ +A v s+Tf +t k e+        g
  KKY22583.1  43 LKKLNVQTIQAIEEVNMFKEDGNVIHFSNPRVQASVPSNTFCITGKGEEKeltelvpG 100
                 45666677777788888899************************99888744555442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1283  (0.07156); expected 358.6 (0.02)
Passed bias filter:                      707  (0.0394333); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1088.20
//
Query:       KKY22584.1  [L=251]
Description: putative acyl-protein thioesterase 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-51  175.7   0.0    1.3e-51  175.5   0.0    1.0  1  Abhydrolase_2   Phospholipase/Carboxylesterase
    3.1e-06   26.8   0.2     0.0041   16.6   0.0    2.8  3  Peptidase_S9    Prolyl oligopeptidase family
    1.5e-05   24.4   0.1       0.02   14.2   0.0    3.1  3  Hydrolase_4     Serine aminopeptidase, S33
    2.2e-05   24.1   0.0    3.4e-05   23.5   0.0    1.2  1  DLH             Dienelactone hydrolase family
    0.00034   20.5   0.0       0.27   11.1   0.0    2.2  2  Abhydrolase_3   alpha/beta hydrolase fold
     0.0004   21.0   0.0    0.00087   20.0   0.0    1.6  1  Abhydrolase_6   Alpha/beta hydrolase family
    0.00043   20.0   0.2       0.14   11.8   0.0    2.8  3  Abhydrolase_1   alpha/beta hydrolase fold
     0.0074   15.8   0.1        1.8    8.2   0.0    2.6  3  Abhydro_lipase  Partial alpha/beta-hydrolase lipase region
  ------ inclusion threshold ------
       0.01   15.5   0.0        0.2   11.3   0.0    2.3  1  FSH1            Serine hydrolase (FSH1)
      0.021   14.5   0.0      0.032   13.9   0.0    1.4  1  Esterase        Putative esterase
      0.097   12.5   0.0        2.6    7.9   0.0    2.3  2  Lipase_3        Lipase (class 3)
       0.15   10.7   0.0       0.23   10.1   0.0    1.2  1  AXE1            Acetyl xylan esterase (AXE1)
       0.21   11.1   0.0       0.28   10.7   0.0    1.2  1  DUF2974         Protein of unknown function (DUF2974)


Domain annotation for each model (and alignments):
>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.5   0.0   9.3e-55   1.3e-51       4     215 ..       4     224 ..       1     226 [. 0.93

  Alignments for each domain:
  == domain 1  score: 175.5 bits;  conditional E-value: 9.3e-55
                    EEEE--SS---EEEEEE--TT--SHHHHHHHH.TT...--TTEEEEEE---EEE-GGGTT-EEE-SS-B--SSTTS.-B-HHHHHHHHHHHHHHHH CS
  Abhydrolase_2   4 aevvspkdkaqavviflHGlGdsghawaeaaktea...alpnikfifphgpelpvtlnggmrmpaWfdlvglspek.kedeagikksaekleelid 95 
                    + vv + +k++a+vi+ HGlGdsg +w + a+ +    +++++kfifp++p +  t+ gg  mp W+d++++s+ + ++d +gi +s  ++  li+
     KKY22584.1   4 PLVVPALKKHTATVIMAHGLGDSGAGWIFLAQNWRrrgKFDEVKFIFPNAPTIRITVTGGFPMPGWYDIMSFSDLSgSNDTNGIIRSRDYFASLIQ 99 
                    66889999*****************9988776543233799*********************************999******************* PP

                    HHHHTT.--GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGGTTTTS-GGG....GG-EEEEEEETT-SSS-HHHHHHHHHHHHTTS CS
  Abhydrolase_2  96 aelkkg.ipssriiigGFSqGaalalylaltlpkklggivafsgalplsqklessatavt....kklpilqiHgeeDpvvplalgkaakevlkkll 186
                     e++   i  sri++gGFSqG+a++l +altlp+k+gg + +s+ l+l+ k++++a + +     k+pi+ +Hg+ Dp+v +  g++++e+ ++l 
     KKY22584.1 100 TEISTNsISPSRILLGGFSQGGAMSLFTALTLPTKIGGFFCLSSYLLLADKIKEHAENEGkganLKTPIFMGHGDSDPLVLYNWGQRSSEAVRELG 195
                    ***8666************************************************98766334479****************************** PP

                    -GEEEEEETT--SS--HHHHHHHHHHHHH CS
  Abhydrolase_2 187 kkvelksyeglaHsideeemqdikeflkk 215
                     +v++++yegl Hs   +e+ d++ f+  
     KKY22584.1 196 YQVDFRTYEGLEHSAALQEIDDVEAFITN 224
                    **************************976 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.46   6.3e+02      15      42 ..      15      42 ..       6      46 .. 0.83
   2 !    6.7   0.0    0.0032       4.4      52      83 ..      98     129 ..      74     139 .. 0.81
   3 !   16.6   0.0     3e-06    0.0041     139     210 ..     163     227 ..     148     229 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.46
                  -EEEEE--TTSSTTHCHHHHTTSGGGGH CS
  Peptidase_S9 15 yvvvvanirGsggyGeafhdagkrklgq 42
                    v++a++ G +g G+ f  + +r+ g+
    KKY22584.1 15 ATVIMAHGLGDSGAGWIFLAQNWRRRGK 42
                  579999*********9999988888765 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0032
                   HHHHHHTTS--GGGEEEEEETHHHHHHHHHHH CS
  Peptidase_S9  52 aealakegyvdserlaitGgSyGGyltgaaln 83 
                   +++ ++++ ++++r+ + G S GG +++ ++ 
    KKY22584.1  98 IQTEISTNSISPSRILLGGFSQGGAMSLFTAL 129
                   4555788899****************998765 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 3e-06
                   G-----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHHHHHHHHHHHHHHHCT CS
  Peptidase_S9 139 nvkaypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakveelarllaFlkealg 210
                   n   ++p+++ hG+ D  v ++ + +  +a+++ g +v+++++ +  H     +a  +e+ ++ aF+ ++l+
    KKY22584.1 163 N--LKTPIFMGHGDSDPLVLYNWGQRSSEAVRELGYQVDFRTYEGLEH-----SAALQEIDDVEAFITNVLE 227
                   2..89*******************************************.....4457888888888888776 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.043        60       2      31 ..      12      41 ..      11      42 .. 0.84
   2 ?    4.2   0.0     0.016        22      77     116 ..     111     150 ..      89     159 .. 0.78
   3 !   14.2   0.0   1.5e-05      0.02     187     233 ..     161     209 ..     146     216 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.043
  Hydrolase_4  2 epkavvvlvHGlaehsgryaelaeaLaaqG 31
                 ++ a+v+++HGl+++      la+++ ++G
   KKY22584.1 12 KHTATVIMAHGLGDSGAGWIFLAQNWRRRG 41
                 6889**********9988888888887766 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.016
  Hydrolase_4  77 plfllGhSmGGliallyllrypdkvaglilsaPalkikak 116
                  ++ l G S GG+++l  +l+ p k+ g+ + ++ l ++ k
   KKY22584.1 111 RILLGGFSQGGAMSLFTALTLPTKIGGFFCLSSYLLLADK 150
                  677889********************99999998877765 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 1.5e-05
  Hydrolase_4 187 aakitlPllllhGeaDkvvdpeas...relyerlgskdktlklypglyHe 233
                   a++++P+++ hG++D++v ++      e++++lg  ++ +++y+gl H+
   KKY22584.1 161 GANLKTPIFMGHGDSDPLVLYNWGqrsSEAVRELGY-QVDFRTYEGLEHS 209
                  56789**************99766333666777775.************7 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   2.5e-08   3.4e-05      87     190 ..      99     211 ..      81     223 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.5e-08
         DLH  87 aylksvpevstkkvgvvGfCmGGalalllaaevpevdaavafYG...........lspekeleeaakikapilalfgeeDefipadevekleealkaan 174
                 ++  s+++ s++++ + Gf  GGa++l  a   p      +f+            ++  ++  + a++k+pi++ +g+ D+ +  +  ++  ea+++ +
  KKY22584.1  99 QTEISTNSISPSRILLGGFSQGGAMSLFTALTLP--TKIGGFFClssyllladkiKEHAENEGKGANLKTPIFMGHGDSDPLVLYNWGQRSSEAVRELG 195
                 45556677999******************99996..3344566666788998766555666667799******************************** PP

         DLH 175 vdlelkvYpgagHaFa 190
                  ++++  Y+g  H+ a
  KKY22584.1 196 YQVDFRTYEGLEHSAA 211
                 *************965 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00019      0.27      60      92 ..      98     131 ..      88     148 .. 0.82
   2 !    7.4   0.0    0.0025       3.5     167     210 ..     166     211 ..     139     212 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00019
                    HHTHH.HHTETTCEEEEEEETHHHHHHHHHHHHH CS
  Abhydrolase_3  60 aeqaw.elgadpsrivlaGdSaGGnlaaavalra 92 
                     +++  + ++ psri l+G S GG +++ +al +
     KKY22584.1  98 IQTEIsTNSISPSRILLGGFSQGGAMSLFTALTL 131
                    4444447789******************999876 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0025
                    --EEEEEETT-TT..HHHHHHHHHHHHHTT--EEEEEETTEETTGG CS
  Abhydrolase_3 167 pptlvvvaefDpl..rdegeayaerlraagvevelieyegmvHgfa 210
                     p+++  ++ Dpl   ++g++ +e++r+ g +v+++ yeg+ H+ a
     KKY22584.1 166 TPIFMGHGDSDPLvlYNWGQRSSEAVRELGYQVDFRTYEGLEHSAA 211
                    577777778887522699*************************865 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   6.3e-07   0.00087       1      95 [.      17     149 ..      17     237 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 6.3e-07
                    EEEE--GC.....GC..HHHHHHHHCCT...CEEEEE--T........TS...TS-GGCS--HHHC............HHH.HHHHCCTT...... CS
  Abhydrolase_6   1 vlllHGagssassWl..vapLaallaag...vhvlapDlp........Gh...Grsdpppldledl............adl.aalldelaa....g 63 
                    v+++HG+g s+ +W   + ++++++  +   +  + p +p        G+   G  + +  +++dl            +d+ a l++ +++    +
     KKY22584.1  17 VIMAHGLGDSGAGWIflAQNWRRRGKFDevkF--IFPNAPtiritvtgGFpmpG--WYDIMSFSDLsgsndtngiirsRDYfASLIQTEIStnsiS 108
                    7899******999*513555544444449563..66777755566666664444..555555555455555555666699998888888889*999 PP

                    TTSEEEEEETCHHHHHHHHHHCC.............EE.EEES- CS
  Abhydrolase_6  64 ggpvvlvGHSlGGalalaaapla...........lvvg.vlldp 95 
                    + ++ l G S+GGa++l+    a            +++ +ll+ 
     KKY22584.1 109 PSRILLGGFSQGGAMSLF---TAltlptkiggffCLSSyLLLAD 149
                    9999**********9999...55555675555543333454444 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.025        35       2      30 ..      16      43 ..      15      56 .. 0.85
   2 !   11.8   0.0   9.9e-05      0.14      69     107 ..     106     147 ..      77     159 .. 0.82
   3 ?    1.3   0.0      0.16   2.1e+02     207     239 ..     161     193 ..     144     215 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.025
                   EEEEE-STTTCGGGGTTGHHHHHHHHT.TS CS
  Abhydrolase_1  2 vlvilhGlpgssdvwaerglapaLakd.gf 30
                   ++++ hGl++s+  w+   la++  ++ +f
     KKY22584.1 16 TVIMAHGLGDSGAGWIF--LAQNWRRRgKF 43
                   599**************..99998888544 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 9.9e-05
                    HCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESE...C CS
  Abhydrolase_1  69 algddkltlvGhSmGGmialayaaeyperVkalvllga...i 107
                    +    ++ l G+S+GG+++l  a+  p ++ ++ +l++   +
     KKY22584.1 106 SISPSRILLGGFSQGGAMSLFTALTLPTKIGGFFCLSSyllL 147
                    5666778899************************99996553 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.16
                    THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTS CS
  Abhydrolase_1 207 lknvlaptlvisgtsDplvppkaledlaqllpk 239
                    + n + p+++ +g+sDplv ++ + ++ ++ ++
     KKY22584.1 161 GANLKTPIFMGHGDSDPLVLYNWGQRSSEAVRE 193
                    57888899999******9988766666666555 PP

>> Abhydro_lipase  Partial alpha/beta-hydrolase lipase region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0013       1.8      42      61 ..      12      31 ..       7      33 .. 0.84
   2 ?    4.7   0.0     0.016        22      23      52 ..     144     173 ..     143     173 .. 0.92
   3 ?   -3.5   0.0       5.9   8.1e+03       3      12 ..     189     198 ..     188     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0013
  Abhydro_lipase 42 ekkpvVlLqHGLlasSevwv 61
                    ++   V++ HGL +s + w+
      KKY22584.1 12 KHTATVIMAHGLGDSGAGWI 31
                    56678**************8 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.016
  Abhydro_lipase  23 YiLtlhRipaknksvssklekkpvVlLqHG 52 
                     Y+L   +i++  ++  ++ + k ++++ HG
      KKY22584.1 144 YLLLADKIKEHAENEGKGANLKTPIFMGHG 173
                     888889999999999999***********9 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 5.9
  Abhydro_lipase   3 eiirkhGypv 12 
                     e +r+ Gy+v
      KKY22584.1 189 EAVRELGYQV 198
                     678999**98 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00015       0.2       6     175 ..      16     179 ..      11     205 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
        FSH1   6 kiLcLhGytqsge..iFraktsalrkllkklnvelvyldaplel.aekadlpkseseeeekseeeeesraWfrkkdekneyegleesldavkdyike.. 99 
                 ++++ hG + sg   iF a+  ++r+  k ++v++++++ap+   + +  +p            +  s++ +  +   n+  g+  s d+ +  i++  
  KKY22584.1  16 TVIMAHGLGDSGAgwIFLAQ--NWRRRGKFDEVKFIFPNAPTIRiTVTGGFPMP-------GWYDIMSFSDLSGS---NDTNGIIRSRDYFASLIQTei 102
                 56677777776652244444..44444333457777777775440222222222.......22333333333333...333333333333333333312 PP

        FSH1 100 ....ngp.fdGiiGFSqGaalaallaslleellkeashpslkfailvsGfkleepkyeeyy....eedkiqtptLhvlGelDtvv 175
                       p    + GFSqG+a++   a +l ++           + ++s++ l   k +e+     +  +++tp+++ +G++D +v
  KKY22584.1 103 stnsISPsRILLGGFSQGGAMSLFTALTLPTKI--------GGFFCLSSYLLLADKIKEHAenegKGANLKTPIFMGHGDSDPLV 179
                 22211222233459*******988777666543........35667777777777766665444556667999999999999887 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.3e-05     0.032     104     154 ..      96     180 ..      91     220 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.3e-05
                 HHHHHHCSEECCC...EEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CC...............................H CS
    Esterase 104 plldanfrtapdg...ravaGqSmGGlgALilalkhpdrFgsvssfSpivnps...............................n 154
                 +l++++ +t++ +     + G+S+GG ++L +al+ p++ g   ++S ++ +                                 
  KKY22584.1  96 SLIQTEISTNSISpsrILLGGFSQGGAMSLFTALTLPTKIGGFFCLSSYLLLAdkikehaenegkganlktpifmghgdsdplvL 180
                 567777777777777466779*******************999999988766655555555555555555555555555555444 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0       0.1   1.4e+02      38      71 ..      29      62 ..      11      63 .. 0.85
   2 ?    7.9   0.0    0.0019       2.6      64      86 ..     109     131 ..      67     135 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.1
                HHHHHHHS-HHHHHHHHHHHHHHHTT-EEEEEEE CS
    Lipase_3 38 gfleayeeslreqvlkelkrllekypeysivvtG 71
                g++ +++++ r   ++e+k ++ + p+++i+vtG
  KKY22584.1 29 GWIFLAQNWRRRGKFDEVKFIFPNAPTIRITVTG 62
                66666776778888999****************9 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0019
                 -EEEEEEEETHHHHHHHHHHHHH CS
    Lipase_3  64 eysivvtGHSLGgalAlLaaldl 86 
                   +i + G S Gga++l++al l
  KKY22584.1 109 PSRILLGGFSQGGAMSLFTALTL 131
                 478****************9987 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00017      0.23     161     192 ..      97     128 ..      92     155 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00017
                 HHHHHHTSTTEEEEEEEEEEETHHHHHHHHHH CS
        AXE1 161 lveivaslpevDeeRvavlGasqGGalalava 192
                 l++   s + + ++R+   G sqGGa++l +a
  KKY22584.1  97 LIQTEISTNSISPSRILLGGFSQGGAMSLFTA 128
                 56666789999*****************9766 PP

>> DUF2974  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0002      0.28      83     115 ..     109     153 ..      82     167 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0002
     DUF2974  83 egkiylgGhSkGGnlAvyaamnaeddlq............erisk 115
                 + +i+lgG+S+GG + ++ a+++++++             ++i++
  KKY22584.1 109 PSRILLGGFSQGGAMSLFTALTLPTKIGgffclssylllaDKIKE 153
                 4579****************9999887655555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.50
# Mc/sec: 1499.22
//
Query:       KKY22585.1  [L=649]
Description: putative urea active [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-15   57.3  17.4    1.2e-15   57.3  17.4    2.4  2  SSF       Sodium:solute symporter family
  ------ inclusion threshold ------
      0.054   13.1   0.9       0.16   11.5   0.9    1.7  1  DUF533    Protein of unknown function (DUF533)
        9.1    6.0   9.6         15    5.3   9.6    1.3  1  DUF4637   Domain of unknown function (DUF4637)


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.4   5.2    0.0092        55       1      43 [.      50      92 ..      50     103 .. 0.92
   2 !   57.3  17.4   2.1e-19   1.2e-15     100     397 ..     101     409 ..      92     418 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.0092
         SSF  1 yflagrsltgfvlglslaasnisaasfvGlaGavaasGlavvl 43
                +++a+rs++   ++ ++ +s + a  ++  a+ ++++G+a++l
  KKY22585.1 50 FMVANRSVGTGLTASAVVSSWMWATAIIWTAAQGYLYGIAGGL 92
                789************************************9875 PP

  == domain 2  score: 57.3 bits;  conditional E-value: 2.1e-19
         SSF 100 klsvdlvggaklielalGlnyetavlllaaltalYtviGGllAvvytdtiqavlmlvgalilliivllevG..gleslveklkeaapkv..vdlltpds 194
                  l++ ++g+a  i  + G+ + ++ +ll + +++Ytv+GGl A+ +td   +++++v ++ l+i ++ + +  gl+s+ + l ea+ +   + +++ +s
  KKY22585.1 101 ILMSMILGAAGVITGLTGMHIIASTFLLPLGVVVYTVVGGLKATFLTDYAHTLVVMVILCYLTIKAFNNPAitGLDSFYDILVEADKTRdiSGNYK-GS 198
                 5678899************************************************************987777*************9664333344.33 PP

         SSF 195 lkllrdpltalslwlglvlGvagl....philvRflaakdakailkgvl......kltivlilvligmisiilfaiklagavpkavgtevgvsniaype 283
                 +  +++  + ++++l   +G + l        ++ +aa+ a+a + g++       ++++ +   +g  +i+l   +++   p+ ++t+  +s +++p 
  KKY22585.1 199 ILSFKS-KSSIIFGLVHSFGDFALvimdTSFWQKGFAADTAAA-MPGYMlggvsyFAVPWAVGTTAGLAAIGLENSSIFPTYPRKMTTDEINSGLVLPY 295
                 323443.345566677789999997776666677777775554.444331111114677888889999999**************************** PP

         SSF 284 Lvvkllpn.llaGlllavmlAaimstltslllsassaftkDlYkkirrkasakekelvgvsriivlvvislaillavqeeqkg..vlklvelafaglas 379
                  v+++ +  + +Glll v +  + st ++ l++ ss+++ D+Y   +  + a++ ++++vs + v   +  a + a   +  g  + ++  + + ++ +
  KKY22585.1 296 TVMAVAGTgGAFGLLLVVFM-CVTSTTSAELIAVSSIVSFDIYRTYINPK-AHDSQVIRVSHWSVAAFGIFASAFATALHYGGidLNWMGYFLATIICP 392
                 *****987257899886665.799********************999888.899999999999999999998888888888875455665555555555 PP

         SSF 380 avlavillalfwkrvneq 397
                  ++  + +++ w +  + 
  KKY22585.1 393 GMF-PMAFTILWRKQSTA 409
                 555.56799999887665 PP

>> DUF533  Protein of unknown function (DUF533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.9   2.7e-05      0.16      34      99 ..     584     644 ..     580     648 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.7e-05
      DUF533  34 lAalGglAykayqnwqanqq.eaapqsapkfqeeeeekaelllrAmiaAAkADGhideeErqrIlqe 99 
                 lA  G+lA++a+ +  ++qq +++ +++++  +e+++++e++l+  i+ + +DG  d++E q I q+
  KKY22585.1 584 LAKAGTLAWNAFWKKDHHQQpQKEGEQEEE--QEQQHDEERVLE--IKNSSSDG--DDTEIQEIRQK 644
                 899********9744333331333333222..367777888888..99999999..79999998887 PP

>> DUF4637  Domain of unknown function (DUF4637)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   9.6    0.0025        15       4      55 ..     595     645 ..     593     649 .] 0.79

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0025
     DUF4637   4 lwkkeleeleareveeeeaeeeseeedeeedraeeesaaegeeesreaeeae 55 
                 +wkk+  ++ ++e e+ee++e++++e++   + ++ s+  +++e +e+ +++
  KKY22585.1 595 FWKKDHHQQPQKEGEQEEEQEQQHDEERV-LEIKNSSSDGDDTEIQEIRQKH 645
                 7*****************99999888888.5666777777778888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1557  (0.0868425); expected 358.6 (0.02)
Passed bias filter:                      749  (0.0417759); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.42s 00:00:01.02 Elapsed: 00:00:00.52
# Mc/sec: 3777.14
//
Query:       KKY22586.1  [L=227]
Description: putative gpi anchored [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.72   10.3   6.1        1.2    9.6   6.1    1.3  1  MGC-24    Multi-glycosylated core protein 24 (MGC-24), sialom
        1.5    9.2   3.0        2.6    8.4   3.0    1.4  1  FAM153    FAM153 family
          5    7.6  16.0        8.7    6.8  16.0    1.3  1  DUF3682   Protein of unknown function (DUF3682)


Domain annotation for each model (and alignments):
>> MGC-24  Multi-glycosylated core protein 24 (MGC-24), sialomucin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   6.1    0.0002       1.2      25     113 ..     136     224 ..     127     227 .] 0.74

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0002
      MGC-24  25 eCkgeekskcsenstvedCsvvnvtelcsaaskst.pkptnstaktttkpsstttstsvatsgttnttvtptsqparkstFDaAsFiGGi 113
                 +C + + s+++++s+ + C++ +  ++++ + ++   ++++sta+ ++++ s+++s+++a+++++  t  p +  a + +F +A+ iG +
  KKY22586.1 136 NCADITFSTATTESVPSTCKNGTGVTAVAFSGTAAiRNANESTAEGESQSGSSSPSSTSAAATSS-PTSNPAAVMAVSWGFLGAAVIGAV 224
                 68877888888888889999987766666666655366667899999888888888877744444.344666667789999999999976 PP

>> FAM153  FAM153 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.0   0.00043       2.6      60     104 ..     154     198 ..     142     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00043
      FAM153  60 seeatgvhmmqvdpatpakkledstitgshqqmsaspssapaeea 104
                  ++ tgv  +    ++  ++ ++st  g  q  s+spss+ a  +
  KKY22586.1 154 CKNGTGVTAVAFSGTAAIRNANESTAEGESQSGSSSPSSTSAAAT 198
                 467899999999999999*********************988654 PP

>> DUF3682  Protein of unknown function (DUF3682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  16.0    0.0015       8.7      23      83 ..     148     207 ..     126     212 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0015
     DUF3682  23 paappsapaapgvdssagssdGeAgssgsnssnttGdsstgdqtpaaaa.annssppegpag 83 
                  ++p + ++ +gv  +a    G+A  +++n s + G+s+ g  +p+++  a  ssp  +pa 
  KKY22586.1 148 ESVPSTCKNGTGV--TAVAFSGTAAIRNANESTAEGESQSGSSSPSSTSaAATSSPTSNPAA 207
                 3333333345565..5555669**********************987653778888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1578.51
//
Query:       KKY22587.1  [L=177]
Description: putative ctr copper [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-30  106.1   0.7    2.9e-30  105.8   0.7    1.0  1  Ctr       Ctr copper transporter family


Domain annotation for each model (and alignments):
>> Ctr  Ctr copper transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.7   1.6e-34   2.9e-30       1     147 [.      13     167 ..      13     168 .. 0.83

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 1.6e-34
         Ctr   1 mlFhwstddtilfrsWritskgqlagsciglfllaifyeflralrerlerewdrhlarsre.krkaassplvdssssseeeaea.........kstssl 89 
                 m+F+ s+++ ++++ W++t+ +++ag+ci++++la ++++l a+r  le++w ++  ++r  + k ++ ++ + +s+++ ++ +         + + ++
  KKY22587.1  13 MMFTNSHTTPLYSSMWTPTTSAGYAGTCIFIIFLASIFRALFAVRTVLEQRWLARARNRRYiLVKGQAGEAGKIESDPDAKTGTlvtargveeNIKVVT 111
                 99***************************************************9996555524444444444433333333333777777776777788 PP

         Ctr  90 skseakksvrttpeqqlirallyvvqvllaYilMLlvMtyNvglflavilGagvGefl 147
                 ++ + ++++r++++  + ra++++v ++++Y+lML++Mt+Nvg+f+++++G+++Ge++
  KKY22587.1 112 ARVRGTIPFRLSVD--VPRAAIFMVITGVGYLLMLVAMTMNVGYFMSLLAGTFIGELA 167
                 88888888888888..***************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.48
# Mc/sec: 1113.99
//
Query:       KKY22588.1  [L=711]
Description: putative metalloreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-21   77.1   0.0    2.6e-21   75.8   0.0    1.7  1  FAD_binding_8  FAD-binding domain
    3.7e-21   75.5  11.8    3.7e-21   75.5  11.8    1.7  2  Ferric_reduct  Ferric reductase like transmembrane component
    6.7e-17   62.0   0.2    1.4e-16   61.0   0.2    1.5  1  NAD_binding_6  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.0   4.3e-25   2.6e-21       5     107 ..     313     414 ..     310     416 .. 0.88

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 4.3e-25
  FAD_binding_8   5 skakvalleedliklkvskpkkslkykaGqyvyinipslsklfwqsHPFtiasapeddklslvikvksgltkklakkllsssk...kelenkkakl 97 
                    +ka++  l++++ ++++ kp +   +kaGq+v++ ++s+++l  qsHPFtias p+ddk++ ++++++g tk+   + ++  +    ++++k    
     KKY22588.1 313 NKATLTKLPGNVTRISIDKPAM--SWKAGQHVFLACHSVVPL--QSHPFTIASLPSDDKMEFLVRAEKGGTKRFLAHASKIGElplDQPSTKSGMK 404
                    6789999**************7..99**************99..****************************999888887665556775555555 PP

  FAD_binding_8  98 kvlidGPYGa 107
                     v+++GPYG 
     KKY22588.1 405 MVAVEGPYGR 414
                    89*******6 PP

>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.9   1.1e+04      72      95 ..      94     117 ..      75     130 .. 0.59
   2 !   75.5  11.8   6.2e-25   3.7e-21       1     124 [.     140     257 ..     140     258 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.9
  Ferric_reduct  72 dsllkkpynllGvlalllliilai 95 
                    +s+++++  +lG  +l+l  ++++
     KKY22588.1  94 SSRFAFSSPQLGHSILVLTNLVVV 117
                    455555555555555544333333 PP

  == domain 2  score: 75.5 bits;  conditional E-value: 6.2e-25
  Ferric_reduct   1 lGiaalillplalllalRnnflepltglsldklllfHkwlgvlafllallHvilyllnflrfsaldeerlldsllkkpynllGvlalllliilait 96 
                    +G++al++lpl++lla+++n++ +l g+++++l+++H+w++++++l +++H+ +++  + r+       ++ +++++p  + G+ a+++l +++it
     KKY22588.1 140 SGHVALAQLPLIFLLAGKQNIIGFLVGVGYERLNWLHRWTARILWLNVTIHMGFWFRDWARY-----DYIVTKITTDPITMRGFAAWVILTFILIT 230
                    59******************************************************999986.....69*************************** PP

  Ferric_reduct  97 SlkfirrrlsyelFyylHhllyvaylll 124
                    S+ +ir rlsye+F ++H ++++ ++ +
     KKY22588.1 231 SFYPIR-RLSYEIFVISHLVTFAGFVAA 257
                    ******.***************999976 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.2   2.3e-20   1.4e-16       1     155 [.     421     684 ..     421     685 .. 0.84

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 2.3e-20
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxx.....xxxxxxxx RF
  NAD_binding_6   1 yenvllvagGiGitpfisilkdllkksk..............kealktkkikliwvvressslewfkdvL....neleeekse.....gnieihiY 73 
                    +++v+l+ag  G t+++++++d+++                 k+   t++i  +wv++++++l wf++ L    + + +++ +     +++e++iY
     KKY22588.1 421 FDSVVLLAGSNGSTFTVPLMRDIVEAWMneasccykpskfapKHLSVTRRIRYVWVIKSRDQLCWFSEQLdrvlEDVRKQHATnssfdKEVEMSIY 516
                    799********************999888999*********999999********************99963334444444337778899****** PP

                    xxxxxxx.........................xxxxxxxxxxxxxxxxxxxx............................................ RF
  NAD_binding_6  74 lTseyea.........................edasdqlissiegenseslk............................................ 100
                    +T ++e                          ++ +d++i+ +e++++ + k                                            
     KKY22588.1 517 VTCDEELvaertksgtccgapslaihgrveevSSTTDAIINEKEKTDQFEVKsiysstafsdiqapttsstrkggcnpdgtcccasssekdehtce 612
                    ****99999********************6665555555555555555555599999999999999999999999999999999999999999999 PP

                    ...................xxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 101 ...................qgvdavsgtr.......nvkihfgRPnlkevlkdiaskhknssvgvfvCGppklvkevkklv 155
                                       +        +       + +i  gRP  k++++++  ++ ++++gv+vCGp++l+++v+++v
     KKY22588.1 613 cthvipsettssaiaatslT--------SsipstspRLRILSGRPHPKTIIRKV-LEEAEGETGVVVCGPKGLRDDVRNSV 684
                    98888877776554444431........2556666699****************.899999*****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4714.51
//
Query:       KKY22589.1  [L=441]
Description: putative atp dependent rna helicase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-37  128.4   0.1    4.3e-37  127.6   0.1    1.4  1  DEAD        DEAD/DEAH box helicase
    8.2e-26   90.5   0.0    1.2e-23   83.6   0.1    2.5  2  Helicase_C  Helicase conserved C-terminal domain
      1e-07   32.1   0.0    2.1e-07   31.1   0.0    1.5  1  ResIII      Type III restriction enzyme, res subunit
     0.0071   15.7   0.1       0.05   12.9   0.0    2.1  2  CMS1        U3-containing 90S pre-ribosomal complex subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.6   0.1   9.6e-41   4.3e-37       2     173 ..      82     249 ..      81     252 .. 0.94

  Alignments for each domain:
  == domain 1  score: 127.6 bits;  conditional E-value: 9.6e-41
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHHHTT.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx.. RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskldng.. 97 
                 ++Q+ +ip+++ + dvl++a+ G GKT++f++  l+++ e     + ++l+++ treLa q+ n++ +f ky  d+++ +++gg++ ++++++l+n+  
  KKY22589.1  82 EVQQVCIPTAMLNVDVLCQAKSGLGKTAVFVLTTLHQL-E-PVPGECQVLVMCHTRELAYQIKNEYARFSKYlPDVKTAVFYGGTPMTKDIETLSNKet 178
                 69*********************************999.4.799999*************************777*******************87778 PP

                 .CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHT.TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHH CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 .vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldq.gfsdfinrilnqlpqitcdgklqrqvivlSATlpkdv 173
                  ++i+vgtpgrl  l++++kl+l++v+ +VlDE+d++ldq ++++++++i++++       + ++qv+++SATl+++v
  KKY22589.1 179 fPNIIVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQiDMRRDVQEIFRAT-------PTDKQVMMFSATLSQEV 249
                 9****************************************************9.......55667********9887 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.011        47      18      71 ..     127     184 ..     112     187 .. 0.71
   2 !   83.6   0.1   2.7e-27   1.2e-23       2     111 .]     288     396 ..     287     396 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.011
                 EEEEEESSHHHHHH..HHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSS.EEE CS
  Helicase_C  18 kilifvntidrlek..vklllekk...gikvavlhgelpqnereeileqfnkgesd.vLi 71 
                 ++l++++t++ +++   ++ + +k   ++k+av++g +p  + +e+l++   +++  +++
  KKY22589.1 127 QVLVMCHTRELAYQikNEYARFSKylpDVKTAVFYGGTPMTKDIETLSNK--ETFPnIIV 184
                 89********666555344422225679**********999999988764..44444555 PP

  == domain 2  score: 83.6 bits;  conditional E-value: 2.7e-27
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 k ++l +ll  + e ++++ifv+++ r+ +  kll ++ ++ ++++h+  +q+er++  ++f++ + ++ +atdv +rGidi+++nl in+dlp + +s
  KKY22589.1 288 KNRKLNDLL-DNLEFNQVIIFVKSTLRATElDKLL-RECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADS 384
                 667778888.78899***********887634666.4447***********************99999******************************* PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 y +r+GR+gR+g
  KKY22589.1 385 YLHRVGRAGRFG 396
                 **********86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   4.6e-11   2.1e-07      28     169 ..      98     245 ..      81     247 .. 0.76

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 4.6e-11
                 EEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG..............GEEEESSS-B--...........-SEEEEEH CS
      ResIII  28 likmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseayke..........igkkvsgdkkka....kekdstnkkilvtti 111
                 l ++  G GKT v  + +  +l    +e ++l+++++++l  q ++e+++f++   +                +     +     ++++t  +i+v t 
  KKY22589.1  98 LCQAKSGLGKTAVFvLTTLHQLEPVPGECQVLVMCHTRELAYQIKNEYARFSKYLPDVktavfyggtpM----T-----KdietLSNKETFPNIIVGTP 187
                 667889********777778888888888****************888777654433332355433222....2.....1233346677999******* PP

                 HHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHH.HHHT---....SEEEEEESS- CS
      ResIII 112 qsldadseeeeeeseellrdrfdviiiDEaHrlgakkswre.ilekfke....avllglTATp 169
                  +l+a        +++l+  + + ++ DE+ ++ ++  +r+ + e f++    + ++ ++AT+
  KKY22589.1 188 GRLNALV-----RDKKLSLRNVKAFVLDECDKMLDQIDMRRdVQEIFRAtptdKQVMMFSATL 245
                 *******.....88889999999************955555466666444456888999**97 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.1e-05      0.05     179     229 ..     181     228 ..     159     247 .. 0.77
   2 ?   -0.1   0.0      0.11   4.7e+02     116     149 ..     291     324 ..     269     336 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.1e-05
        CMS1 179 giavGtpgRildLleeeslsvdeLkrivlDasfvDkknrgildiretrkev 229
                  i vGtpgR+  L++++ ls+ ++k  vlD      k  + +d+r   +e+
  KKY22589.1 181 NIIVGTPGRLNALVRDKKLSLRNVKAFVLDEC---DKMLDQIDMRRDVQEI 228
                 688***************************75...3444455555555555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.11
        CMS1 116 klvksaksngsPelLvltlaalRaaDlaralkkl 149
                 kl +        ++++   ++lRa++l + l++ 
  KKY22589.1 291 KLNDLLDNLEFNQVIIFVKSTLRATELDKLLREC 324
                 55555555556678999999******99999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.31s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2915.99
//
Query:       KKY22590.1  [L=91]
Description: hypothetical protein UCRPC4_g03285 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.015   15.7   0.3      0.021   15.2   0.3    1.3  1  Snapin_Pallidin  Snapin/Pallidin
      0.026   14.3   0.1      0.028   14.2   0.1    1.1  1  PRT_C            Plant phosphoribosyltransferase C-terminal
      0.064   13.1   0.0        0.2   11.5   0.0    1.7  2  DASH_Dam1        DASH complex subunit Dam1
       0.35   11.4   1.5         13    6.4   1.9    2.6  2  NPV_P10          Nucleopolyhedrovirus P10 protein


Domain annotation for each model (and alignments):
>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.3   4.6e-06     0.021      14      87 ..       7      79 ..       1      80 [. 0.86

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.6e-06
  Snapin_Pallidin 14 kldeldeklk.elrqsQeeLleqldrlnekLkeleeaqeaevlpdlkeyakKLvnikkrmsslnerlqklkkRae 87
                      +d l+++ + +l  sQ  L+ +     ++++++++++e   + +l+   + + +i+  + ++ er++ + +R++
       KKY22590.1  7 RIDVLEQNANaSLASSQAFLARSHAAADAEIARFKRINE--EMDKLDAEFDTIEKIRAVVGKVAERVRAVSQRVD 79
                     5566666554268899*******999999**99999999..8*******************************96 PP

>> PRT_C  Plant phosphoribosyltransferase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   6.2e-06     0.028      21      82 ..      28      88 ..      15      91 .] 0.73

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.2e-06
       PRT_C 21 rkplhmdlklskadsv..npdeLdEEFDsfPssrdldvvrmRYdrlRsvagrvqtvlGdvAtqg 82
                r+ +  d+ +     +  ++d Ld EFD++   r   vv    +r+R+v +rv    G  A+q+
  KKY22590.1 28 RSHAAADAEIARFKRIneEMDKLDAEFDTIEKIR--AVVGKVAERVRAVSQRVDS-GGSSAAQS 88
                555556666666665411689********98665..599999**********976.46666665 PP

>> DASH_Dam1  DASH complex subunit Dam1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.37   1.7e+03      27      38 ..       9      21 ..       1      22 [. 0.57
   2 ?   11.5   0.0   4.5e-05       0.2       4      32 ..      39      67 ..      37      72 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.37
   DASH_Dam1 27 esLsd.fNeSFas 38
                + L++  N S+as
  KKY22590.1  9 DVLEQnANASLAS 21
                4455556777776 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 4.5e-05
   DASH_Dam1  4 afaeLaDsletLdknledLqqihesLsdf 32
                +f+++++++++Ld+ ++ +++i+  + ++
  KKY22590.1 39 RFKRINEEMDKLDAEFDTIEKIRAVVGKV 67
                79*******************98776655 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   1.9    0.0028        13      28      52 ..      48      72 ..       1      80 [. 0.61
   2 ?    6.0   0.1    0.0036        16       8      29 ..      59      80 ..      57      87 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0028
     NPV_P10 28 ddvqenlpdvtelnekLdaqsaqLa 52
                d++++++ +++++ + + + ++ + 
  KKY22590.1 48 DKLDAEFDTIEKIRAVVGKVAERVR 72
                3333333333333333333333333 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0036
     NPV_P10  8 vIradikavddkVdalqqqvdd 29
                 Ira + +v ++V a++q+vd+
  KKY22590.1 59 KIRAVVGKVAERVRAVSQRVDS 80
                69999**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1002  (0.0558871); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 708.88
//
Query:       KKY22591.1  [L=319]
Description: hypothetical protein UCRPC4_g03286 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-21   75.6  19.2      3e-21   75.6  19.2    2.7  4  Wbp11     WW domain binding protein 11
  ------ inclusion threshold ------
        3.5    6.1   8.0        1.1    7.8   4.5    1.7  2  FapA      Flagellar Assembly Protein A


Domain annotation for each model (and alignments):
>> Wbp11  WW domain binding protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6  19.2   3.3e-25     3e-21       1      78 []       6      83 ..       6      83 .. 0.99
   2 ?   -3.3   0.2       1.4   1.3e+04      23      23 ..     169     169 ..     155     180 .. 0.46
   3 ?   -2.7   0.0      0.91   8.2e+03      64      72 ..     230     238 ..     215     243 .. 0.65
   4 ?   -1.0   0.2      0.26   2.3e+03      42      54 ..     286     298 ..     273     309 .. 0.63

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 3.3e-25
       Wbp11  1 gKslnPadaaRKaqrkkelkKnKkerqkareaklakkdpdeleeeiekLeelessgkldaadkkklekLekelkavkk 78
                ++slnPa ++RK +++k+lkK+K+e q++r++kla+++pd+l+++i++L++le++g++++++k+ le+L k+lkavkk
  KKY22591.1  6 ERSLNPAAQQRKLDKAKALKKGKAEAQARRNEKLARRNPDRLQRQIDDLRALEEKGQIKPREKQMLEELDKDLKAVKK 83
                79**************************************************************************97 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.4
       Wbp11  23 K 23 
                 K
  KKY22591.1 169 K 169
                 2 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.91
       Wbp11  64 kklekLeke 72 
                 ++l++Leke
  KKY22591.1 230 EELDRLEKE 238
                 455555554 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.26
       Wbp11  42 leeeiekLeeles 54 
                  eeei++L e e+
  KKY22591.1 286 AEEEIRRLAEEEE 298
                 4666777753333 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   4.5   0.00012       1.1     336     412 ..      25     103 ..      13     121 .. 0.83
   2 ?   -1.6   0.1     0.084   7.5e+02     323     355 ..     275     306 ..     264     310 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00012
        FapA 336 kekl..keleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskk 412
                 k+    ++ +++ +  +++ ++l+++i+ l++l++++q++++ k++l++l +++++ k+  e+l ++  +  +e + ++
  KKY22591.1  25 KKGKaeAQARRNEKLARRNPDRLQRQIDDLRALEEKGQIKPREKQMLEELDKDLKAVKKAREALGNKAPTFGKERQPRN 103
                 444422455556666699**********************************************999999888888773 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.084
        FapA 323 kteievgldepelkeklkeleeeleeleeelek 355
                 +t+ie+     e+ e++++l ee e++++el+k
  KKY22591.1 275 QTDIEA-YTAAEAEEEIRRLAEEEERFRAELMK 306
                 344444.33368888999999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1475  (0.0822689); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2042.13
//
Query:       KKY22592.1  [L=219]
Description: putative hhe domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.7e-12   45.8   0.4    1.3e-11   45.2   0.4    1.3  1  Hemerythrin  Hemerythrin HHE cation binding domain


Domain annotation for each model (and alignments):
>> Hemerythrin  Hemerythrin HHE cation binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.4   7.4e-16   1.3e-11       2     129 ..       7     124 ..       6     126 .. 0.87

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 7.4e-16
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH...CCC.HHHHHHHHHHHHHHHHHHHHHHHHCHTC CS
  Hemerythrin   2 ivealdeeHralrallerlraladaaaevhgalrklaelldelvdeleaHhaaEEellfPlle..drpggravldvlereHdeirelleelrellkgl 97 
                  i +a+ ++Hr+l +  +++    ++        ++ +++ +++v+el++H  aEE +++P+++    p+g+   +  ++eH+ + e l+ ++ l  + 
   KKY22592.1   7 ISDAIIKDHRELEQYYNEVINNPED-------HDRQERWGNQFVWELARHSIAEELVVYPAMQkyMGPEGDKKAEKDRAEHHKVKEHLKIFQSLSPTS 97 
                  56788999*********99888888.......666777777**********************99999999999999999999999998888776666 PP

                  GGSTCHHHHHHHHHHHHHHHHHHHHHHHTHHH CS
  Hemerythrin  98 eepsaaafaelleeladllreHiakEesilfp 129
                  +     +   +l++l ++l +Hi++Ee+  +p
   KKY22592.1  98 S-----DYIPKLRTLWTDLSSHIKEEEEDDLP 124
                  6.....7888*****************98777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:01.02
# Mc/sec: 650.39
//
Query:       KKY22593.1  [L=297]
Description: putative thioesterase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-05   25.2   0.0    3.9e-05   23.9   0.0    1.6  1  4HBT             Thioesterase superfamily
  ------ inclusion threshold ------
      0.033   13.9   1.3      0.077   12.7   1.3    1.5  1  Phage_holin_2_4  Bacteriophage holin family, superfamily II-l


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   4.3e-09   3.9e-05       3      57 ..     180     233 ..     179     235 .. 0.95

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 4.3e-09
                 SB-HHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEEEESS-BBTTCEEEEEEEEE CS
        4HBT   3 vvhgGvylallDeaagaalrslggrgilvvvvelsidflrpvrlgdeltvearvl 57 
                 vvhgG + + lDea+g +++    +  +++ ++l i f++pvr+g    ++a++ 
  KKY22593.1 180 VVHGGMLSTVLDEALGRVAANTFPA-NMATNSRLDIAFVKPVRPGTIYQIRAHPD 233
                 7***********************9.*******************9999999875 PP

>> Phage_holin_2_4  Bacteriophage holin family, superfamily II-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.3   8.6e-06     0.077       8      56 ..      37      87 ..      31      90 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.6e-06
  Phage_holin_2_4  8 alaaagnkatggGavvsfaGflasselialvGlavAliGl..LvnWyYkre 56
                      +aaa++ a   G   s   +l+s+ +++  G+a+ l G+  L++W Y +e
       KKY22593.1 37 PVAAASEAAQSTGRARSWWSWLSSTVVATTTGAALGLGGAlaLITWDYLQE 87
                     578999999999**************************963369**99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2100.07
//
Query:       KKY22594.1  [L=242]
Description: putative dienelactone hydrolase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-16   59.8   0.0    3.2e-16   59.6   0.0    1.0  1  DLH            Dienelactone hydrolase family
  ------ inclusion threshold ------
       0.13   10.9   0.0       0.18   10.4   0.0    1.1  1  PhoPQ_related  PhoPQ-activated pathogenicity-related protein


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   3.5e-20   3.2e-16       2     216 ..      25     241 ..      24     242 .] 0.82

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 3.5e-20
         DLH   2 daylatpknakkpvvvviqeifGvn....dnikdiserlaeeGYvalaPdlYarqa.....ldpndeaeaaraldelvskvaeekvlddlkaavaylks 91 
                 ++y+ ++++a   +++vi +ifG+     +  + i++   e  Y +++Pd++ ++        p+d + +a++ +   +k a     +++   ++ ++s
  KKY22594.1  25 KTYITGSTSA-DTGILVIYDIFGYFpqtlQGADIIASADKEHPYQVFIPDFFEGEPaditwYPPKDDDTKAKLGNFFNTKAAPPPKIERIPKLLKDAQS 122
                 6788888888.99***********9644333333444445678************99999866777777777776666776666666666688999999 PP

         DLH  92 vpevstkkvgvvGfCmGGalalllaaevpevdaavafYGlspekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFa 190
                 ++  + k  gv G+C+GG++a l +   + ++a +  ++ ++  + ++a+kik p l l+ +  e  pad+v+ + e+l     + +++ +p+  H+ +
  KKY22594.1 123 QN-PNIKTWGVLGYCWGGKVATLASGTLDVFKAGAEVHPAMV--DPSDAEKIKIPFLCLASGD-E--PADDVKAFGEKL---TGPKHIETFPEQIHGWM 212
                 98.6669********************************554..557899*****99987765.4..588899******...44557************ PP

         DLH 191 ndsre...syneeaaedawervlelfkqv 216
                 +++ +     ++ a e+++++v+ +f+++
  KKY22594.1 213 AARGDlkdPKVKDAYEKGYKKVITFFHEH 241
                 **999998999***************986 PP

>> PhoPQ_related  PhoPQ-activated pathogenicity-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0     2e-05      0.18     250     305 ..     162     213 ..     135     220 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 2e-05
  PhoPQ_related 250 ivDplsYlerltipkyiinasgDdffvpdstkfyfekLkgekalrivPnssHglsn 305
                    +vDp    e+++ip ++ +asgD+   +d+ k + ekL+g+k++++ P++ Hg + 
     KKY22594.1 162 MVDPSDA-EKIKIP-FLCLASGDE--PADDVKAFGEKLTGPKHIETFPEQIHGWMA 213
                    5666554.788888.566799999..89************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.30s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1599.61
//
Query:       KKY22595.1  [L=204]
Description: putative phosphoglycerate mutase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-20   74.0   1.7    2.2e-16   60.1   1.0    3.0  2  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00012       2.2      47      68 ..       4      25 ..       2      34 .. 0.82
   2 !   60.1   1.0   1.3e-20   2.2e-16      66     184 ..      52     186 ..      47     192 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00012
                EEEE-SSHHHHHHHHHHHHCTT CS
  His_Phos_1 47 aiysSplkRarqTaeliaealg 68
                 +y+Sp +Ra++T el++  ++
  KKY22595.1  4 NVYVSPRQRAKRTLELLGLSCH 25
                58*************9987665 PP

  == domain 2  score: 60.1 bits;  conditional E-value: 1.3e-20
                 CTT--EEE-GGGS----GGGTT-B.HHHHHH..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHH.................HHHHHTTTSEEEEEE- CS
  His_Phos_1  66 alglpveldegLrEidfGdweglttaeiaeeypeeleawlrdpadvrppggEsledvaaRvaaale.................elaarhegetvlvVsH 147
                 +++ +ve++e++rE+d+Gd+eg t++ei+e++++e  + + d +++  pggEs+ dv++R++a ++                 + ++  + ++vlvV+H
  KKY22595.1  52 KTDARVEVTEAIREWDYGDYEGITSKEIQERREKEGIKEKWDIWTDGCPGGESPTDVTQRLDALIHeirlkyhslilssstssASTSPAPAGDVLVVAH 150
                 46689*************************98887766555556668999****************777777777666666544444444555****** PP

                 HHHHHHHHHHHHT--GGGGGGB---TT-EEEEEE-SS CS
  His_Phos_1 148 ggvirallarllglpleelrrleldnaslsvlefdeg 184
                 g+++ra+++r+++ pl++   + ++  ++  l+++++
  KKY22595.1 151 GHILRAFAMRWINEPLTR-TSFLMEAGGVGTLSYEHK 186
                 ****************98.578889999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.32s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1376.09
//
Query:       KKY22596.1  [L=1112]
Description: putative lipase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-16   60.0   0.0    5.7e-15   55.4   0.0    2.6  1  Lipase_3       Lipase (class 3)
  ------ inclusion threshold ------
      0.038   14.6   2.4       0.14   12.8   2.4    2.1  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   6.4e-19   5.7e-15       1     138 [.     785     951 ..     785     954 .. 0.92

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 6.4e-19
                 EEEE----------------EEE-HHHH-GTT-EEEHHHHHHHH...S-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHHHHHHTT-SS... CS
    Lipase_3   1 vvafRGtesakdwltdldfslteakellekeggkvhsgfleaye...eslreqvlkelkrllekypeysivvtGHSLGgalAlLaaldlvengene... 93 
                 v++ RGt   +d+ltd+ +   ++        +kvh+g+  +++     + + v  +lk  le+yp++ +v++GHSLGga+A+L+a+ + e + ne   
  KKY22596.1 785 VLTCRGTLGFEDVLTDMMCDYDDLYWRG--APYKVHKGIHASARrllAGTGSRVMLTLKAALEEYPDFGLVLCGHSLGGAVASLLAILISEPRTNEsts 881
                 6789***********9988877776653..58***********987778889999************************************99999999 PP

                 .............................---EEEEEES----B-HHHHHHHHT-TTEEEEEEEETT--GGG-S CS
    Lipase_3  94 .............................kkkvtvvtfGqPrvgnkefaklvdsqlnkkvlrvvntnDivPrlp 138
                                               + + v+++G P +++++++ + +      ++++vn  DivP l+
  KKY22596.1 882 slfatvslqkllshphstdksaapvdlpaGRSIHVYAYGPPATMSSSLRIATR---GL-ITTIVNGADIVPSLS 951
                 ****************************99********************999...55.889*********986 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.4   1.5e-05      0.14      54      96 ..     841     896 ..     755    1077 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.5e-05
                    HHHHCCTT..TTSE..EEEEETCHHHHHHHHHHCC..EEEEES-....................... CS
  Abhydrolase_6  54 aalldelaagggpv..vlvGHSlGGalalaaaplalvvgvlldp......................p 96 
                     a+l+     ++++  vl GHSlGGa+a++   la    +l++                       p
     KKY22596.1 841 KAALE----EYPDFglVLCGHSLGGAVASL---LA----ILISEprtnestsslfatvslqkllshP 896
                    33333....3456667**************...88....4443323333333333323333343331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.50
# Mc/sec: 6717.34
//
Query:       KKY22597.1  [L=1518]
Description: putative structural maintenance of chromosomes 5 smc5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-21   76.9   0.0    3.8e-21   75.5   0.0    1.8  1  SMC_N            RecF/RecN/SMC N terminal domain
    2.2e-13   51.2  17.2    2.2e-13   51.2  17.2    5.2  1  AAA_23           AAA domain
    0.00027   21.2   1.6     0.0097   16.2   0.0    3.9  3  RGS              Regulator of G protein signaling domain
    0.00099   18.8   0.6     0.0024   17.6   0.0    2.0  2  AAA_29           P-loop containing region of AAA domain
      0.004   17.0   6.6      0.043   13.6   0.0    3.9  3  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
  ------ inclusion threshold ------
      0.043   13.7   0.8       0.43   10.5   0.0    2.7  2  NACHT            NACHT domain
       0.11   12.3   2.2        3.8    7.2   0.5    3.1  3  ATP_bind_1       Conserved hypothetical ATP binding protein
       0.13   11.9   0.0       0.13   11.9   0.0    4.4  6  AAA_27           AAA domain
       0.14   12.6   0.0       0.14   12.6   0.0    4.0  3  ABC_tran         ABC transporter
       0.43   11.0   1.7        1.6    9.2   0.0    2.7  2  AAA              ATPase family associated with various cellul
       0.46   10.8   2.9          7    7.0   0.0    4.0  4  Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
        5.2    7.1  36.4       0.31   11.0  11.8    4.7  4  Laminin_II       Laminin Domain II


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.0   2.6e-24   3.8e-21       2     181 ..     440    1420 ..     439    1445 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.5 bits;  conditional E-value: 2.6e-24
                  EEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N    2 lkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevs 98  
                  + r++++nF +y  ++++    +++++++GpNG GKs l+ Ai+  LG   ++  r++++s+ +++        +a++ei +  + k+    + + +
  KKY22597.1  440 IVRVKLTNFVTY--TSAEFFPGPNLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDVSEFVKY-----GCIEATIEIELAADPKR---FRRNPV 526 
                  77999*******..68899999**************************988866699********9.....88999999988777777...455566 PP

                  EEEEEETTSE.EEEEETTEEE-HHHHHHHHHCTT-STT........................................................... CS
                  xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................... RF
       SMC_N   99 isrrvkrkge.seykingkevtkkevsellesagiske........................................................... 135 
                  ++r++ ++g+ s+++ing++ +++ v ++ +s  i+++                                                           
  KKY22597.1  527 VTRTIRKEGNkSTFTINGRTSNRSGVLDMARSFSIQIDnlcqflpqdkvvefaamsplellqstqqaagspemlethenlkklraeqkqllttskad 623 
                  66776666555************************************************************************************** PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY22597.1  624 kgllanlqnrqemsrdaverfrqradvkerlgwlercrpmpqyreahqaaneakakkaqlrqelkklrqevepalrsakakqeyrlrvrdfvkqrsd 720 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY22597.1  721 eyqlankeaeainkkidkcddkvqelehrseaerdkvqrirdlsdkakdireqteelkregqgkqrelsaverameqletssgqqevklqrrsadty 817 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY22597.1  818 aawkwvqenqdkfenhvygppmiecslknpryadaveallqnndflfftvqsrkdfstlqkqlaeqmklhdfslketaagldrftrpmeeeglmalg 914 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY22597.1  915 fekfaldllngpepvlallcsekglhrtpigfreiteeqyrrteqsgitnwvsgghsyqitrrreygdagvssrvrnlrkatvwtdqpvdagrrrel 1011
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY22597.1 1012 slkkseiqshieelrkqlaelspgfeaardeareldaerqelqddkdqrqkiltefkalptklgkviirhfptllnhlaaqleeklktvndivqgir 1108
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY22597.1 1109 erliaideeknetvmkkaelavdyaqcifrvrklhtalieaeiyhieaksdhdtldarnqdihdllkdkeaqeqqaiqehleksekakklvqevhkl 1205
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY22597.1 1206 vteansnprlqeflqgigqttveqldadidsakaqldlthegdvnivkqfedrekrigeinarlnanqatlndvqagitelrsnwepeldslvsris 1302
                  ************************************************************************************************* PP

                  ........................................................................CS-HHHHHHHHHHHHHHHHCCS--S CS
                  ........................................................................xxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 ........................................................................lLSgGektLvalaLlfAiqkvkpap 160 
                                                                                            SgGe++++ +  l+A+q+ ++ap
  KKY22597.1 1303 eafsdsfarigcagqvsiykasssddmdeadlpraarentteegngldfanwaihiyvkfreseplslldshRQSGGERAVSTIFYLMALQSLSRAP 1399
                  ************************************************************************99*********************** PP

                  EEEECTTTTTS-HHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  161 lyllDeidaaLDeknvkkvae 181 
                  + ++Dei++ +D +n + v  
  KKY22597.1 1400 FRVVDEINQGMDPRNERMVHG 1420
                  **************9988754 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2  17.2   1.5e-16   2.2e-13       1     200 []     442     695 ..     442     806 .. 0.65

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 1.5e-16
      AAA_23   1 kLkienfrsfrdqeidFskgltlItGpNGaGKTTildAiklaLygetprlsrks......grgfeksdveiese.....gkvkayveltfenkdgrytr 88 
                 ++k+ nf  +   e+  +++l+ ++GpNG+GK+T+++Ai+l+L+  ++ l+r +      + g+ ++ +eie          +++v++t++++++++  
  KKY22597.1 442 RVKLTNFVTYTSAEFFPGPNLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKdvsefvKYGCIEATIEIELAadpkrFRRNPVVTRTIRKEGNKS-- 538
                 6899***************************************999999999987767665555566666555555555555666888888888864.. PP

      AAA_23  89 sierere.lskkkgkttkkaklelleideleqfisellgskkiil.nlilflgqer............feefelkdkke.................... 153
                   +++++ ++++ +   ++a  ++++id+l+qf+++   ++++ + +l l++  ++            + +++++++k+                    
  KKY22597.1 539 --TFTINgRTSNRSGVLDMARSFSIQIDNLCQFLPQDKVVEFAAMsPLELLQSTQQaagspemletheNLKKLRAEQKQllttskadkgllanlqnrqe 635
                 ..3333312223334568888999999*********888777733244444444445587766665553333334444444555555555555555555 PP

      AAA_23 154 .............................rleelekeleeledekkllekl....eqekekekeleeleeeleeilkele 200
                                              +                         + ++e +++  +l++el+++ +e+e
  KKY22597.1 636 msrdaverfrqradvkerlgwlercrpmpQ--------------------YreahQAANEAKAKKAQLRQELKKLRQEVE 695
                 555555555555555555555555555552....................044433333334444444444444444432 PP

>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.55   8.2e+02      22      44 ..       8      35 ..       2      66 .. 0.74
   2 !   16.2   0.0   6.5e-06    0.0097      43     111 ..     146     213 ..     126     218 .. 0.89
   3 ?   -0.8   0.1       1.2   1.8e+03      73     110 ..    1182    1219 ..    1159    1221 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.55
                TTCTHHHHHHHHHHHHHTS.....SHHH CS
         RGS 22 efseenlsFwlaveefkka.....keqe 44
                e++ enl+F+l   ++ ++     k+++
  KKY22597.1  8 EHAAENLQFFLWHHDYTNRfnelpKHDQ 35
                5688************999665553332 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 6.5e-06
                 HHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCSSSTTTTTTHHHHHHHHHHHHHHHHHHHHT CS
         RGS  43 qeelkkkakeIyneylapsspkelnidkklreelekrlekeqpsrklfeeaqeevfellekdsypkFlk 111
                  +   +++ +I+  y+a++ ++elni++k r+ l + l + ++++++f ++   v   l+++++p+F++
  KKY22597.1 146 IQPYREEISRIIAIYIAKGGSRELNISSKQRQALLRALAT-TTHPSAFGDVVGTVEWSLRHQAHPNFIR 213
                 556678899******************************9.9*************************97 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.2
                  HHHHHHHHCSSSTTTTTTHHHHHHHHHHHHHHHHHHHH CS
         RGS   73 reelekrlekeqpsrklfeeaqeevfellekdsypkFl 110 
                   + ++++lek+++ +kl +e+ + v e  ++   ++Fl
  KKY22597.1 1182 QQAIQEHLEKSEKAKKLVQEVHKLVTEANSNPRLQEFL 1219
                  56789999999999999999999998887777777776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.8       5.8   8.7e+03      52      60 ..     125     133 ..     122     134 .. 0.80
   2 !   17.6   0.0   1.6e-06    0.0024       3      42 ..     442     480 ..     440     484 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.8
      AAA_29  52 vrfNkaane 60 
                 +++Nkaa++
  KKY22597.1 125 TNYNKAAAA 133
                 69****986 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.6e-06
      AAA_29   3 rlqlvNWgtfdghtieidlkgatlltGpsGsGKSTllDAi 42 
                 r++l N  t++  ++   ++   +++Gp+G+GKSTl+ Ai
  KKY22597.1 442 RVKLTNFVTYTSAEFFPGPN-LNMVIGPNGTGKSTLVCAI 480
                 88999999999966666656.59*************9887 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   2.9e-05     0.043       1      19 [.     462     480 ..     462     500 .. 0.89
   2 ?    2.1   0.2     0.095   1.4e+02     146     220 ..     675     773 ..     664     809 .. 0.54
   3 ?    1.8   0.5      0.11   1.7e+02     219     275 ..    1289    1415 ..    1134    1443 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.9e-05
      AAA_21   1 lnvliGpNgsGKSnLLdal 19 
                 ln++iGpNg+GKS+L  a+
  KKY22597.1 462 LNMVIGPNGTGKSTLVCAI 480
                 79************97666 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.095
      AAA_21 146 ditsrawsllllldglrke.rigllnifadyfgfakekrllqrlvrslklveielsdlgegeeliasvderlrer.......................g 220
                 + ++ +++l+++l +lr e + +l ++ a+  +  ++++++++++++++l++ e++++++++++ ++    l +r                        
  KKY22597.1 675 EAKAKKAQLRQELKKLRQEvEPALRSAKAKQEYRLRVRDFVKQRSDEYQLANKEAEAINKKIDKCDDKVQELEHRseaerdkvqrirdlsdkakdireQ 773
                 555555666666666666666666666666667777777777777777777777777777777766655444443444444444444444444444440 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.11
      AAA_21  219 r.....................................................................gvvflengdgqelparelSdGtkrll. 245 
                  +                                                                     +v f e +    l+++  S G + +  
  KKY22597.1 1289 NwepeldslvsriseafsdsfarigcagqvsiykasssddmdeadlpraarentteegngldfanwaihiYVKFRESEPLSLLDSHRQSGGERAVSt 1385
                  3444444444444444444444444444444444444444444455555555555555566666777766666667777777777788999999976 PP

      AAA_21  246 alltallralkkgsllliDEpEngLHPkll 275 
                   ++++ l+ l+ +++ ++DE+  g++P+  
  KKY22597.1 1386 IFYLMALQSLSRAPFRVVDEINQGMDPRNE 1415
                  677777777777799999999999999754 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00029      0.43       4      27 ..     464     487 ..     461     511 .. 0.82
   2 ?    0.1   0.1      0.44   6.6e+02      91     150 ..    1172    1230 ..    1161    1237 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00029
                 EEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaeg 27 
                 ++ G++G GK+tL++ ++l +  g
  KKY22597.1 464 MVIGPNGTGKSTLVCAICLGLGWG 487
                 689**************9987654 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.44
                  TT-SS-TCH.........HHHHH.CTTTTT--EEEEEEECCCHHHHCTTSSCE..EEEE-- CS
       NACHT   91 DelvtdlgqkekqpvrtlLseli.rkkllpeasllltvrpralrdleeqleeaivlevegf 150 
                  D l+++   +e+q++++ L++    kkl++e++ l+t  +++  +l+e l+    + ve +
  KKY22597.1 1172 DLLKDKEA-QEQQAIQEHLEKSEkAKKLVQEVHKLVTEANSNP-RLQEFLQGIGQTTVEQL 1230
                  44444444.4888888888877515789999999999888877.89998887766666666 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2     0.063        94       1      15 [.     465     479 ..     465     481 .. 0.89
   2 ?    7.2   0.5    0.0026       3.8     149     217 ..    1143    1215 ..    1122    1239 .. 0.77
   3 ?   -2.6   0.0       2.6   3.8e+03      78     108 ..    1293    1324 ..    1283    1327 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.063
  ATP_bind_1   1 vvGpaGsGKttfvga 15 
                 v+Gp G GK+t+v a
  KKY22597.1 465 VIGPNGTGKSTLVCA 479
                 89**********965 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0026
  ATP_bind_1  149 lsamlrlelPhvvvlnkfDllkeklekeleffedvealslllekee....ekykklaeaiaelleefalvlrf 217 
                    a++++e+ h+ + +  D l+ +++   + ++d ea ++ + +e+    ek kkl +++ +l++e + ++r+
  KKY22597.1 1143 HTALIEAEIYHIEAKSDHDTLDARNQDIHDLLKDKEAQEQQAIQEHleksEKAKKLVQEVHKLVTEANSNPRL 1215
                  5678999***************8877767777666655554444445589999*************9998876 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.6
  ATP_bind_1   78 sldwldeeleke.eddyllfDtPGQielfths 108 
                  +ld l +++++  +d++  +++ GQ+ +++ s
  KKY22597.1 1293 ELDSLVSRISEAfSDSFARIGCAGQVSIYKAS 1324
                  578888899888899***********999876 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.5e-05      0.13       8      46 ..     445     480 ..     439     493 .. 0.77
   2 ?   -2.7   0.8       2.5   3.7e+03     158     195 ..     602     638 ..     590     652 .. 0.65
   3 ?   -1.4   0.9         1   1.5e+03     150     189 ..     675     713 ..     667     735 .. 0.69
   4 ?   -1.1   0.5      0.78   1.2e+03     155     203 ..     760     808 ..     756     811 .. 0.81
   5 ?   -2.3   0.2       1.8   2.8e+03     142     181 ..    1023    1062 ..    1011    1073 .. 0.65
   6 ?   -3.2   0.6       3.5   5.2e+03     163     197 ..    1161    1199 ..    1142    1210 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.5e-05
      AAA_27   8 LeryGkftdrsldfsaeeadlhliyGpNEAGKstalrAi 46 
                 L+ +  +t  ++ f    ++l +++GpN +GKst++ Ai
  KKY22597.1 445 LTNFVTYTSAEF-F--PGPNLNMVIGPNGTGKSTLVCAI 480
                 555555544443.4..489****************9997 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.5
      AAA_27 158 lrevleaLeaeadelfkprkskkrainealeeleeakk 195
                  +e l++L+ae+++l +++k+ k  + + l++ +e+++
  KKY22597.1 602 THENLKKLRAEQKQLLTTSKADK-GLLANLQNRQEMSR 638
                 45678888999999988888888.44444444444433 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1
      AAA_27 150 easaGlaslrevleaLeaeadelfkprkskkrainealee 189
                 ea+a  a+lr+ l++L++e +   ++ k+k+ +++   ++
  KKY22597.1 675 EAKAKKAQLRQELKKLRQEVEPALRSAKAKQ-EYRLRVRD 713
                 7888888999999999999998888888877.55444433 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.78
      AAA_27 155 laslrevleaLeaeadelfkprkskkrainealeeleeakkelreaqvr 203
                 +++l++  ++++++ +el ++ + k+r++ + ++++e+++++  +++v+
  KKY22597.1 760 IRDLSDKAKDIREQTEELKREGQGKQRELSAVERAMEQLETSSGQQEVK 808
                 5678888889999999999999988899999999999988888887776 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 1.8
      AAA_27  142 gelgqlLfeasaGlaslrevleaLeaeadelfkprkskkr 181 
                  +el + L e s G++  r+   +L+ae++el +++ ++++
  KKY22597.1 1023 EELRKQLAELSPGFEAARDEARELDAERQELQDDKDQRQK 1062
                  4555666666677777777777777777777766666663 PP

  == domain 6  score: -3.2 bits;  conditional E-value: 3.5
      AAA_27  163 eaLeaeadelfkprkskk....rainealeeleeakkel 197 
                  ++L+a+ +++++  k k+    +ai+e le+ e+akk +
  KKY22597.1 1161 DTLDARNQDIHDLLKDKEaqeqQAIQEHLEKSEKAKKLV 1199
                  455555544444333333100245555555555555544 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.7e-05      0.14      15      32 ..     464     481 ..     452     522 .. 0.88
   2 ?   -3.3   4.5         8   1.2e+04      48      89 ..     723     764 ..     665     808 .. 0.48
   3 ?   -0.4   0.7       1.1   1.6e+03      57      93 ..    1166    1203 ..    1139    1265 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.7e-05
                 EEEESTTSSHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlklla 32 
                  ++G+nG+GKStL+ +++
  KKY22597.1 464 MVIGPNGTGKSTLVCAIC 481
                 579***********9997 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 8
                 EGGGB-HHHCCHCEEEE-SS--S-TTSBHHHHHHHTCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  48 dlkeqeleslrkeigvlpqepqlfpeltvrenesdeeiekal 89 
                 +l ++e e  +k+i  +  + q  ++ + +e+++ ++i ++ 
  KKY22597.1 723 QLANKEAEAINKKIDKCDDKVQELEHRSEAERDKVQRIRDLS 764
                 122233333344444444442222222222333333333333 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.1
                  CCHCEEEE-SS--S-TTSBHHHH.HHHTCHHHHHHHST CS
                  xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
    ABC_tran   57 lrkeigvlpqepqlfpeltvren.esdeeiekalsklg 93  
                   ++ i  l ++++ +++  ++e+ e++e+++k+++++ 
  KKY22597.1 1166 RNQDIHDLLKDKEAQEQQAIQEHlEKSEKAKKLVQEVH 1203
                  33333333333333333333333422222222222221 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0011       1.6       2      23 ..     464     485 ..     463     520 .. 0.81
   2 ?   -1.1   0.5       1.6   2.3e+03      39      97 ..    1178    1238 ..    1143    1252 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0011
                 EEESSTTSSHHHHHHHHHHHHT CS
         AAA   2 llyGppGtGKTllakavakelg 23 
                 +++Gp GtGK++l+ a++  lg
  KKY22597.1 464 MVIGPNGTGKSTLVCAICLGLG 485
                 589*************997664 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.6
                  TTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH......TTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   39 vgesekkirelfkeakekakpsilfiDEidalaksr......sgseseeeervvnqLlteldgvk 97  
                    + ++ i+e +++ ++       ++ E+++l+++       ++  ++ ++++v+qL + +d  k
  KKY22597.1 1178 EAQEQQAIQEHLEKSEKA----KKLVQEVHKLVTEAnsnprlQEFLQGIGQTTVEQLDADIDSAK 1238
                  333344444444443332....2378999999998866666555566667777777766666655 PP

>> Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0047         7      10      57 ..     137     184 ..     133     191 .. 0.91
   2 ?   -2.3   0.1       3.8   5.7e+03      32      58 ..     393     420 ..     384     427 .. 0.75
   3 ?    0.6   0.0      0.46   6.9e+02      15      48 ..     700     731 ..     694     752 .. 0.76
   4 ?   -2.5   0.0       4.5   6.8e+03      39      60 ..    1269    1290 ..    1258    1300 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0047
                      HTT-S-HHHHHHHHHHHHHHHHHHHH.TS--TTT--HHHHHHHHHS-- CS
  Phage_int_SAM_1  10 kerglspnTlraYrrdLrrflkflaergkesleqlttedvraflaele 57 
                      +++++ p T++ Yr  ++r++     +g++  ++++ + ++a l++l+
       KKY22597.1 137 SAKQFQPYTIQPYREEISRIIAIYIAKGGSRELNISSKQRQALLRALA 184
                      68999*****************99888*****************9987 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.8
                      HHHH..TS--TTT--HHHHHHHHHS--- CS
  Phage_int_SAM_1  32 flae.rgkesleqlttedvraflaelee 58 
                       la  ++++s++++t++ +r+  +++ +
       KKY22597.1 393 SLANhDEGPSADRATPSQIRTSQNQSSR 420
                      44444899*********99988877766 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.46
                      -HHHHHHHHHHHHHHHHHHHH.TS--TTT--HHH CS
  Phage_int_SAM_1  15 spnTlraYrrdLrrflkflaergkesleqltted 48 
                      s++  ++Yr ++r+f+k  ++  + +l++ ++e 
       KKY22597.1 700 SAKAKQEYRLRVRDFVKQRSD--EYQLANKEAEA 731
                      788899**********99988..55555555555 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 4.5
                       --TTT--HHHHHHHHHS----- CS
  Phage_int_SAM_1   39 esleqlttedvraflaeleeeg 60  
                        +++q+t +dv+a + el++++
       KKY22597.1 1269 LNANQATLNDVQAGITELRSNW 1290
                       678999*******999999987 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0  11.8   0.00021      0.31       7     104 ..     668     769 ..     665     774 .. 0.72
   2 ?    2.4   1.5     0.096   1.4e+02       6      66 ..    1016    1076 ..    1009    1114 .. 0.52
   3 ?    0.4   0.2       0.4     6e+02       4      32 ..    1089    1117 ..    1086    1159 .. 0.68
   4 ?    6.5   3.3    0.0053       7.9       6      96 ..    1193    1287 ..    1189    1289 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHHHHHH CS
  Laminin_II   7 eanetakevleqlaplsqnlentkeklseinrsve.......etnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseikel 98 
                 ea + a+e ++++a+l q+l++++++++ + rs++       ++ + vk+ +   ++A+++   ++k++++  dk++el++++ea+    d++++i+ l
  KKY22597.1 668 EAHQAANEAKAKKAQLRQELKKLRQEVEPALRSAKakqeyrlRVRDFVKQRSDEYQLANKEAEAINKKIDKCDDKVQELEHRSEAE---RDKVQRIRDL 763
                 555555555566666666666666555554444331111111577788999999*******************************5...5999999999 PP

                 HHHHHH CS
  Laminin_II  99 IaqARk 104
                   +A +
  KKY22597.1 764 SDKAKD 769
                 888865 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.096
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-- CS
  Laminin_II    6 aeanetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLek 66  
                  +e+++ ++e  +qla+ls   e  ++++ e++++ +e +++ ++ +k++ + +    kL k
  KKY22597.1 1016 SEIQSHIEELRKQLAELSPGFEAARDEARELDAERQELQDDKDQRQKILTEFKALPTKLGK 1076
                  4666667777777777777777777777777777555555555555555444433333333 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.4
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II    4 laaeanetakevleqlaplsqnlentkek 32  
                  laa+ +e++k v ++++++ ++l  + e+
  KKY22597.1 1089 LAAQLEEKLKTVNDIVQGIRERLIAIDEE 1117
                  55666666666666666666666655543 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0053
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH.......HHHHHHHHH CS
  Laminin_II    6 aeanetakevleqlaplsqnlentkeklsei.nrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeasss....lsdniseik 96  
                  ++a++ ++ev + +++ + n ++++e l++i +++ve+ ++++++a+ ++++  +  +++ k+ ++ ++++ e++ + +a+++    + + i e++
  KKY22597.1 1193 EKAKKLVQEVHKLVTEANSN-PRLQEFLQGIgQTTVEQLDADIDSAKAQLDLTHEGDVNIVKQFEDREKRIGEINARLNANQAtlndVQAGITELR 1287
                  6899999********98887.8999999999567899*******************************************9998666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2384  (0.132969); expected 358.6 (0.02)
Passed bias filter:                      736  (0.0410508); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        68  (0.00379274); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.80u 0.33s 00:00:02.13 Elapsed: 00:00:00.58
# Mc/sec: 7844.98
//
Query:       KKY22598.1  [L=274]
Description: hypothetical protein UCRPC4_g03293 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00095   19.0   0.0     0.0016   18.2   0.0    1.3  1  Abhydrolase_5  Alpha/beta hydrolase family
     0.0023   17.2   0.0     0.0095   15.2   0.0    1.9  1  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.8e-07    0.0016      48     141 ..      47     149 ..      31     161 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.8e-07
  Abhydrolase_5  48 eiikeapklekfvvgGhslGGvvasrfaa.ee.ekiegvvflasYPe...kdelselskk........vlsivgteDgvlnvkslekakkflpkdt 130
                     +i+ +++     +gG s+G  +a    + ee e+i++++ l sYP    kd   +            vl ++g++D++ ++++l+k +k++  ++
     KKY22598.1  47 TVID-HQGKGACALGGRSMGARAAILALSsEEyEEIKALI-LVSYPLhtgKDVRDQI--LldldedivVLFVIGSRDSMCDISRLNKVRKKMKAES 138
                    4566.444567899*****975544333313336898876.679**75423322222..122444455999************************* PP

  Abhydrolase_5 131 kvvsieGgnha 141
                     +v++e   h 
     KKY22598.1 139 WLVTVEEASHG 149
                    ******99885 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.1e-06    0.0095      65     164 ..      44     140 ..      42     166 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-06
  Hydrolase_4  65 fvekvkeehpelplfllGhSmGGliallyl..lrypdkvaglilsaPalkikaklkappllklllkllgkllpklqvsnnlkadslsrdpevvaayea 160
                  ++++v +++++  + l G SmG+  a+l+l  ++y+ ++++lil++  l   ++++     ++ll l   ++  + + ++  + ++sr ++v+++++a
   KKY22598.1  44 MFKTVIDHQGKGACALGGRSMGARAAILALssEEYE-EIKALILVSYPLHTGKDVR----DQILLDLDEDIVVLFVIGSRDSMCDISRLNKVRKKMKA 136
                  5677887888889*****************855555.5*******97777776642....23455666666666666777777777777777777777 PP

  Hydrolase_4 161 dplv 164
                  ++++
   KKY22598.1 137 ESWL 140
                  7665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2045.63
//
Query:       KKY22599.1  [L=662]
Description: putative mfs multidrug transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-31  108.1  34.1    5.4e-31  107.8  30.9    2.0  2  MFS_1       Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.8  30.9     3e-35   5.4e-31      12     347 ..     129     492 ..     112     502 .. 0.71
   2 !    2.2   0.2    0.0039        71     131     173 ..     495     548 ..     484     586 .. 0.62

  Alignments for each domain:
  == domain 1  score: 107.8 bits;  conditional E-value: 3e-35
       MFS_1  12 rsilgpalplalaedlgispse.igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslwlllvlrvlqGlgagalfpaga 107
                 ++ +++ l+  ++e++ is    + l +t+y +g a++sl+l+++s+ +Gr++v+++++l++ l  ++++ a  +sl+ ++++r++ +lga+a+++++ 
  KKY22599.1 129 STSYTSGLS-EMMEEFSISSVPvATLGVTFYLFGLAIGSLILAPVSEVYGRKPVYVIAMLWYTLL-VAPA-AkaTSLTSIIIVRFFGALGASAMISNAP 224
                 222444455.8899999665551666777788899******************************.8888.44255559******************** PP

       MFS_1 108 aliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee...........kgtgpap 195
                   + d++ ++ +++a++l+++g   G+++gp++gg+ +++lgWr++ +i+  +++++f++ l+++ e++ +    +++ ++             +++ +
  KKY22599.1 225 GTVGDISVEKYQALAFSLWGIGPLNGPVIGPIIGGFSTQYLGWRWTDWIIMCMGAFSFIM-LVVMKETYAPAILRRKASRLrketddhrwwcRYDQRLA 322
                 *********************************************************995.24444444444444444443777888899**9999999 PP

       MFS_1 196 lvpawkallkdpvl..........willialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr.............l 271
                 ++++ k+ l++p +          w + ia++++  ++++ ++  p+    +++++++ +++    ++  +g ++ +++  l+++             +
  KKY22599.1 323 FFELMKINLSRPLImavreqicifWNVYIAIVYG--ILYLCFVAYPIV-FAQRDFTTAQQGL--AFIGIGIGTFMVIFLEPLIRKminshnkdpetgrV 416
                 9999999999997754444444335333333333..566677777774.7888888324444..55555555566667777777777779999998888 PP

       MFS_1 272 grrrrlllallllllaalglallavt...ssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagsl 347
                 +++ ++ +  ++++l+  g +++a+t   s  ++++   + +G+ +g  ++s++ +a++++  +  g +++ +   +sl
  KKY22599.1 417 PPEAAMSIVTIGAILIPTGELWFAWTclpSRIHWSI--PIAAGIPFGAGNTSVFIYATNYLA-HSYGIYAASALAGNSL 492
                 88************************8554444444..444555444444444444444442.3444443333333333 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.0039
       MFS_1 131 slGailgpllggllasslgWravfyilaivsllafvlfllll...........p 173
                 s+   + pl+g+ ++ssl+ +++  +l+i+ +  + + ++++           +
  KKY22599.1 495 SIMGGCLPLAGPTMYSSLNAHWAGTLLGILEVAIIPIPIIFYkygsrirkrstL 548
                 555566677777888888888887777777777766666666444333333330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2110  (0.117686); expected 358.6 (0.02)
Passed bias filter:                      756  (0.0421663); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.48
# Mc/sec: 4118.20
//
Query:       KKY22600.1  [L=601]
Description: putative kelch repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-13   50.1   8.6    2.2e-08   33.9   0.2    4.1  3  Kelch_5        Kelch motif
    2.6e-08   33.8  11.9       0.02   14.9   0.1    5.1  4  Kelch_4        Galactose oxidase, central domain
    7.7e-08   32.4  12.0      0.016   15.5   0.2    5.3  4  Kelch_3        Galactose oxidase, central domain
    3.3e-06   26.8   7.2      0.021   14.8   0.5    3.7  4  Kelch_2        Kelch motif
    8.3e-06   25.9  13.0       0.17   12.2   0.6    4.8  4  Kelch_6        Kelch motif
    0.00025   20.6  11.8      0.004   16.7   2.0    4.2  4  Kelch_1        Kelch motif
  ------ inclusion threshold ------
      0.036   14.3   0.0      0.079   13.2   0.0    1.5  1  Glycophorin_A  Glycophorin A


Domain annotation for each model (and alignments):
>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2      0.02        51      15      41 ..      23      52 ..      10      53 .. 0.80
   2 !   33.9   0.2   8.5e-12   2.2e-08       1      42 []     215     265 ..     215     265 .. 0.89
   3 !   15.0   0.4   7.1e-06     0.018       1      38 [.     277     315 ..     277     318 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.02
     Kelch_5 15 ekiYvyGGkvg..rdgsvs.ddvyvLdlps 41
                +k+++yGG  +  +  s+s   ++++d+ps
  KKY22600.1 23 TKLFLYGGEYSdnPVTSPSaYALWTYDIPS 52
                689*****9998888888845999999998 PP

  == domain 2  score: 33.9 bits;  conditional E-value: 8.5e-12
     Kelch_5   1 iPppRaghcavtvs......ekiYvyGGkvg...rdgsvsddvyvLdlpsf 42 
                 +P++R + cav+vs      +++Y++GG +     ++  ++d ++L++psf
  KKY22600.1 215 TPEYRVNPCAVVVSapdgssTNVYMFGGQNLlpyGEQTQYSDTWILTIPSF 265
                 69***********5556666**********888789999***********9 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 7.1e-06
     Kelch_5   1 iPppRaghcavtvsekiYvyGGkvgrdgsvsd..dvyvLd 38 
                 +Pp+R+gh   ++++++ v GG+vg ++ ++d   +yv+d
  KKY22600.1 277 VPPGRSGHTCNVWNSQMVVVGGYVG-EDLSCDspGIYVFD 315
                 6***********************8.55555434566665 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.3   0.00025      0.63      14      47 ..      24      61 ..      17      63 .. 0.77
   2 ?    4.7   0.2     0.012        31      17      41 ..     182     206 ..     172     217 .. 0.83
   3 !   14.9   0.1   7.7e-06      0.02       5      44 ..     224     270 ..     223     279 .. 0.76
   4 !    8.5   0.2   0.00079         2       1      41 [.     280     321 ..     280     336 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00025
     Kelch_4 14 tiylfGGrgedg...tllndl.ylldlstntWrrlgsl 47
                +++l+GG+++d+   ++++ + + +d+++ +W+ ++s+
  KKY22600.1 24 KLFLYGGEYSDNpvtSPSAYAlWTYDIPSSSWSSVASP 61
                79*********98653333333668*********9887 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.012
     Kelch_4  17 lfGGrgedgtllndlylldlstntW 41 
                 l GG ++  t +n ++++d++t tW
  KKY22600.1 182 LAGGTNATFTQMNVIDVYDIATSTW 206
                 57888885599999*********** PP

  == domain 3  score: 14.9 bits;  conditional E-value: 7.7e-06
     Kelch_4   5 hsatsipdg...tiylfGGrgedg....tllndlylldlstntWrrl 44 
                 ++++s pdg   ++y+fGG++       t ++d+++l +++ tW ++
  KKY22600.1 224 AVVVSAPDGsstNVYMFGGQNLLPygeqTQYSDTWILTIPSFTWIKV 270
                 556777775555*********9856799************9999555 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.00079
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedgtllndl..ylldlstntW 41 
                 +R gh++ ++++   +++GG+ +++ +++    y++d+++ tW
  KKY22600.1 280 GRSGHTCNVWNS-QMVVVGGYVGEDLSCDSPgiYVFDTANLTW 321
                 599*******65.5555*******988888777999*****99 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.7     0.004        10       3      39 ..      24      63 ..      23      69 .. 0.75
   2 !    7.1   0.0    0.0026       6.6       9      48 ..     185     226 ..     178     227 .. 0.78
   3 !   15.5   0.2   6.3e-06     0.016       2      47 ..     236     287 ..     235     288 .. 0.88
   4 !    7.3   0.1    0.0023       5.8       3      32 ..     292     322 ..     290     337 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.004
     Kelch_3  3 rlyifGGlgddg...qdrlndvyvydldtntWaeiaslpp 39
                +l+++GG+  d+    ++  +++ yd+ + +W ++as+++
  KKY22600.1 24 KLFLYGGEYSDNpvtSPSAYALWTYDIPSSSWSSVASPTT 63
                5899****9533333555599************9977644 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0026
     Kelch_3   9 Glgddgqdrl..ndvyvydldtntWa...eiaslppaRaghaata 48 
                 G   ++ +++  n  +vyd++t tW    +++++p +R++ +a++
  KKY22600.1 185 G---TNATFTqmNVIDVYDIATSTWYkqyTSGTTPEYRVNPCAVV 226
                 3...347777888899*******99885555*******9988765 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 6.3e-06
     Kelch_3   2 drlyifGGlgd...dgqdrlndvyvydldtntWaei....aslppaRaghaat 47 
                 + +y fGG +    + q+ ++d++ + + + tW ++     s pp+R+gh++ 
  KKY22600.1 236 N-VYMFGGQNLlpyGEQTQYSDTWILTIPSFTWIKVdtsdQSVPPGRSGHTCN 287
                 5.8**********999************999999886666778********86 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0023
     Kelch_3   3 rlyifGGlgddgqdrl...ndvyvydldtntWa 32 
                  ++++GG+   g+d +      yv+d+++ tW 
  KKY22600.1 292 QMVVVGGYV--GEDLScdsPGIYVFDTANLTWI 322
                 69*******..99*99*************9*95 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   1.3e-05     0.034      12      47 ..      23      60 ..      12      62 .. 0.89
   2 ?   -3.2   0.0       3.8   9.8e+03      34      43 ..     198     207 ..     195     208 .. 0.83
   3 ?   -2.4   0.0       2.1   5.4e+03      13      19 ..     236     242 ..     222     249 .. 0.77
   4 !   14.8   0.5   8.4e-06     0.021       1      43 [.     280     315 ..     280     323 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.3e-05
     Kelch_2 12 gkiyvvGGahtdnpnlsssd..vhvldlekhvWeevtp 47
                 k++++GG ++dnp+ s+s   ++++d  + +W+ v+ 
  KKY22600.1 23 TKLFLYGGEYSDNPVTSPSAyaLWTYDIPSSSWSSVAS 60
                69*****************64489*********99875 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.8
     Kelch_2  34 vldlekhvWe 43 
                 v+d  + +W 
  KKY22600.1 198 VYDIATSTWY 207
                 69999***96 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.1
     Kelch_2  13 kiyvvGG 19 
                  +y++GG
  KKY22600.1 236 NVYMFGG 242
                 6899999 PP

  == domain 4  score: 14.8 bits;  conditional E-value: 8.4e-06
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvWe 43 
                 +r+gh++ v++++++vvGG+       + +d+ +  ++ +v++
  KKY22600.1 280 GRSGHTCNVWNSQMVVVGGY-------VGEDLSCDSPGIYVFD 315
                 699*****************.......4444444444444444 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.6   6.8e-05      0.17      10      47 ..      19      62 ..      15      65 .. 0.87
   2 !    6.2   0.1    0.0053        14      16      40 ..     182     206 ..     172     215 .. 0.89
   3 ?    5.0   0.1     0.013        33      10      33 ..     230     260 ..     221     274 .. 0.64
   4 !    7.8   0.3    0.0017       4.3       2      40 ..     281     321 ..     281     322 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.8e-05
     Kelch_6 10 vgg..kiYifGGytds....spylnkvwvydpetksWeqlpplp 47
                +++  k++++GG + +    sp+   +w yd+ + sW+ +++++
  KKY22600.1 19 WNSytKLFLYGGEYSDnpvtSPSAYALWTYDIPSSSWSSVASPT 62
                6654479******999****9999999*************9986 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0053
     Kelch_6  16 ifGGytdsspylnkvwvydpetksW 40 
                 ++GG ++ ++  n + vyd+ t +W
  KKY22600.1 182 LAGGTNATFTQMNVIDVYDIATSTW 206
                 56888888***************** PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.013
     Kelch_6  10 vgg...kiYifGGytds.....spylnkvwvy 33 
                 ++g    +Y+fGG++       ++y++  w++
  KKY22600.1 230 PDGsstNVYMFGGQNLLpygeqTQYSDT-WIL 260
                 5543335*******99888885555544.444 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0017
     Kelch_6   2 raghslvsvggkiYifGGytds..spylnkvwvydpetksW 40 
                 r gh++ +++++ +++GGy++   s  +  ++v+d  + +W
  KKY22600.1 281 RSGHTCNVWNSQMVVVGGYVGEdlSCDSPGIYVFDTANLTW 321
                 689****************9966643344555555555555 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2     0.039     1e+02      13      45 ..      24      61 ..      21      62 .. 0.71
   2 !    5.4   0.0    0.0053        14      25      41 ..     192     208 ..     183     209 .. 0.84
   3 ?   -2.5   0.0       1.5   3.9e+03      14      30 ..     237     258 ..     235     270 .. 0.62
   4 !   16.7   2.0   1.6e-06     0.004       2      39 ..     281     321 ..     280     323 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.039
                EEEEEEEBCS.....SSBEEEEEEEETTTTEEEEECCC CS
     Kelch_1 13 kiYviGGsdg.....gnalssvevyDpetntWrelpsM 45
                k++  GG  +     + +   ++ yD  + +W+ ++s 
  KKY22600.1 24 KLFLYGGEYSdnpvtSPSAYALWTYDIPSSSWSSVASP 61
                5556666666555555555567889999*******996 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0053
                 BEEEEEEEETTTTEEEE CS
     Kelch_1  25 alssvevyDpetntWre 41 
                  ++ + vyD  t tW +
  KKY22600.1 192 QMNVIDVYDIATSTWYK 208
                 57899**********86 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.5
                 EEEEEEBCS.....SSBEEEEE CS
     Kelch_1  14 iYviGGsdg.....gnalssve 30 
                 +Y +GG++      ++  s+ +
  KKY22600.1 237 VYMFGGQNLlpygeQTQYSDTW 258
                 7889999865555555555555 PP

  == domain 4  score: 16.7 bits;  conditional E-value: 1.6e-06
                 BBSEEEEEETTEEEEEEEBCS...SSBEEEEEEEETTTTEE CS
     Kelch_1   2 ragagavvvggkiYviGGsdg...gnalssvevyDpetntW 39 
                 r+g+++ v + ++ v+GG+ g   ++ +  ++v+D+ + tW
  KKY22600.1 281 RSGHTCNVWNSQMVVVGGYVGedlSCDSPGIYVFDTANLTW 321
                 9**************************************** PP

>> Glycophorin_A  Glycophorin A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.1e-05     0.079       7      80 ..     397     467 ..     391     478 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.1e-05
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXSSSSSSS-TTHHHHHHHHHHHHHHHHHHHHH CS
  Glycophorin_A   7 vssttgdkskasvtastpsahevseltirtevaaeqeetgereqlvhdFselvitliifgvmAgvigtillisY 80 
                      ++tg    ++vt  t s ++++ ++++t+v++     g  ++   d   + ++ ii gv+Agv+   ll +Y
     KKY22600.1 397 SVTETGTAAVSTVTSKTTSTDSSGAVSTETTVSTIPSG-GGSSSDGGDNKGARLAAIIAGVIAGVLF--LLAAY 467
                    456678888899**********************9999.8888899999****************85..44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 3971.86
//
Query:       KKY22601.1  [L=218]
Description: putative bcas2 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-58  196.1   2.4    6.4e-58  195.8   2.4    1.0  1  BCAS2        Breast carcinoma amplified sequence 2 (BCAS2)
  ------ inclusion threshold ------
      0.014   15.3   1.0       0.33   10.9   0.1    2.2  2  TerB         Tellurite resistance protein TerB
       0.73   10.1   6.2        2.3    8.5   6.1    1.8  1  TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
          5    7.6   8.9         25    5.4   9.0    2.0  1  APG6_N       Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> BCAS2  Breast carcinoma amplified sequence 2 (BCAS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.8   2.4   1.4e-61   6.4e-58       9     204 ..      22     217 ..      21     218 .] 0.98

  Alignments for each domain:
  == domain 1  score: 195.8 bits;  conditional E-value: 1.4e-61
       BCAS2   9 iDaeletpelreaveklieeElrrsrkkksdlaelPppkeeklespllaaeleRveageplea.lDlsRYe.leaPsaek.kedleaweealrnakaql 104
                 iD+e  tp++r+++++li +  +  ++k+  ++ +P ++e ++ spl+++el+R++a+ p++  +Dl RYe +eaPs+++  e++ aw+++lr+a+a++
  KKY22601.1  22 IDQEA-TPAERAKADQLITAAIAPEHRKEL-HPLIPSEPEYNF-SPLIQTELDRKAANLPMQGgIDLGRYEaPEAPSSDNgTETVGAWRDTLRKAYASN 117
                 79998.********************9998.************.******************9********9999999988999*************** PP

       BCAS2 105 ehqalRqeNleLlekygknaWrvhneqleaelkklekeleetkeeieevnrqRkseQeeageeLksleekWrelvsknleieaaceeleaeieelkrqa 203
                 +++++R +Nl+Ll+++gknaW+++n+qle++l+ lekel+e+ke++++vn++Rk++Qee ++e+ +lee+W+++++++le+e+a ++l++ei +l++q 
  KKY22601.1 118 SYLSSRLANLSLLDEFGKNAWLIGNAQLEDILRVLEKELAEMKEATDNVNKARKAAQEESRGEIVNLEETWKRGIGRILEVEIATQHLRQEIIQLQKQD 216
                 *************************************************************************************************98 PP

       BCAS2 204 a 204
                 a
  KKY22601.1 217 A 217
                 7 PP

>> TerB  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   7.4e-05      0.33      33      70 ..      15      50 ..       8      54 .. 0.85
   2 ?    2.9   0.1     0.021        95      54     104 ..     132     182 ..     126     184 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.4e-05
        TerB 33 llaevakaDgqvsesErqafrellksrfglspeeakal 70
                l  +va +D++ +++Er++ ++l+  + ++ pe  k+l
  KKY22601.1 15 LAHRVADIDQEATPAERAKADQLI--TAAIAPEHRKEL 50
                6679********************..777778877776 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.021
        TerB  54 ellksrfglspeeakallelfeeaeeeavdleqftralkrklspeqrrali 104
                 e+ k+++ + +++++++l++ e++ +e  ++ + +++ +++ ++e r +++
  KKY22601.1 132 EFGKNAWLIGNAQLEDILRVLEKELAEMKEATDNVNKARKAAQEESRGEIV 182
                 5667778899999***********999888888888888887788887776 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   6.1    0.0005       2.3      16      77 ..     144     206 ..     136     215 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0005
  TMF_TATA_bd  16 rlsseirrlEgElaslkeelerleaerdeareeivk.lmkeneelkelkkeleelekeleelq 77 
                  +l+  +r lE Ela++ke   ++++ r++a+ee    +++  e+ k+  +++ e+e   + l+
   KKY22601.1 144 QLEDILRVLEKELAEMKEATDNVNKARKAAQEESRGeIVNLEETWKRGIGRILEVEIATQHLR 206
                  678889***********************9998754034445555666666666555555555 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   9.0    0.0057        25      18      90 ..     149     215 ..     143     218 .] 0.59

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0057
      APG6_N  18 leqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleee 90 
                 l+ +eke  +++e  ++++k +k         ee++ e+ +le++ ++ +  + e+e + + l++e+ +l+++
  KKY22601.1 149 LRVLEKELAEMKEATDNVNKARK------AAQEESRGEIVNLEETWKRGIGRILEVEIATQHLRQEIIQLQKQ 215
                 44444444555555555544433......34556666777777777777777777777777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1018  (0.0567795); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.33s 00:00:00.87 Elapsed: 00:00:00.50
# Mc/sec: 1301.69
//
Query:       KKY22602.1  [L=736]
Description: putative neutral ceramidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.5e-214  713.4   0.1   1.7e-214  713.1   0.1    1.0  1  Ceramidase_alk   Neutral/alkaline non-lysosomal ceramidase, N
    2.1e-51  174.1   0.1    3.3e-51  173.5   0.1    1.3  1  Ceramidse_alk_C  Neutral/alkaline non-lysosomal ceramidase, C


Domain annotation for each model (and alignments):
>> Ceramidase_alk  Neutral/alkaline non-lysosomal ceramidase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  713.1   0.1  1.9e-218  1.7e-214       1     506 [.      42     566 ..      42     567 .. 0.96

  Alignments for each domain:
  == domain 1  score: 713.1 bits;  conditional E-value: 1.9e-218
                     EEEEEEEEE----SEEEEEESS--SS-EEEEESS--EEEEEEEEESS.S--EEEEEEESSS---HHHHHHHHHHHHHH...STTT-SGGGEEEEE CS
  Ceramidase_alk   1 YlvGvgkaDiTGpvaevnlmGYakleqkasGlhqRlysraFivadae.kkkrvvfvsldaamvsqavrlevlkkLkak...ygdlYteenvalsg 91 
                     Yl+GvgkaDiTGpv+e+nlmGYa+++q+++Gl+qRly+raFi++d+e +++r+v+++ld++++++a+r+++l+ L+++   y ++Yt++nva++g
      KKY22602.1  42 YLLGVGKADITGPVVELNLMGYADTSQTGTGLRQRLYARAFIIGDPEvDTDRIVYLVLDTQSGDTAIRNGILEGLANLgsdY-SMYTKDNVAVTG 135
                     9*********************************************98999************************9887767.9*********** PP

                     --BSBEE----SSHHHHGGGTB--HHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEE--SSEEETTHHHHTT-T..T-TT-TTS---EEEEEEEE CS
  Ceramidase_alk  92 tHtHsgpggylqyllyqitslGfvkqsfdaivdgivksikrAheslkpgklsvgkgelldaninRSpsaYlanPeeerakYksnvdkemtlLkle 186
                     tH+Hsgpg++l+y+l+q+tslGf++qs+daiv+g++ +i+rAh++l+ g++svg++el d+n+ RS++aYl+nP+eera+Y++++dk+mtlLk++
      KKY22602.1 136 THSHSGPGAWLNYFLPQVTSLGFSHQSYDAIVEGTILAIQRAHQNLTLGEISVGTTELVDGNLSRSQYAYLQNPSEERAMYDYDTDKNMTLLKFT 230
                     *********************************************************************************************** PP

                     E...T-EEEEEEE----B-SS-TT--SBB-HHHHHHHHHHHHTT--S.....TT-EEEEE-SS-TTEES-SS.....................SS CS
  Ceramidase_alk 187 dasdkkeiGvlnwfavHgtslnntntlisgDNkGvAayllekevekkeksgkekfvaafaqsnvGDvspnvlGalCedsgeeCdlekstCegkse 281
                     ++sd+k+iG+lnw++vHgtsl+++ntl +gDNkGvAayl+e+ + +++ s++++fva+f+q+nvGD++pnvlGa+Ced+g+ C++++stC+g ++
      KKY22602.1 231 RSSDGKAIGILNWYPVHGTSLYQNNTLSTGDNKGVAAYLFEEYAATEN-SAADGFVAGFSQANVGDTTPNVLGAYCEDTGLACRFNDSTCDGATQ 324
                     ********************************************9985.89******************************************** PP

                     S..TSSSTS...-.HHHHHHHHHHHHHHHHHHHH.HHT-EEE-S-.EEEEEEEEE-TT-EE-GG...TSS-EE-----EE----SS-SSSS-SS- CS
  Ceramidase_alk 282 kcagrgpgk...d.efestkiigerqfekakell.ksakeevsgk.vksrhqyvdmskvevklk...ngtevktckaalGysfaagttdgpgafd 367
                      c+grgp     d +++s+++ig+rqf++a++++ +++ ++++g+ v  +h+y+d+s+++++++   ++++ +tc+aalGysfa+gt+dgpgafd
      KKY22602.1 325 GCHGRGPYWtisDqGTKSCYEIGRRQFAAAQSIFtSTDLTSITGStVAGFHTYQDFSNYTFQSPldsTRENISTCSAALGYSFAGGTSDGPGAFD 419
                     *******99999779*******************5455688***99*****************986667799*********************** PP

                     --S........SS...-HHHHHHT-SS-S---HHHHHHTTT--EEE--T..T-SS-SS-SEEEEEEEEETTEEEEE-SSEE-HHHHHHHHHHHHH CS
  Ceramidase_alk 368 ftq........geteknplwklvrklllakpskeqkecqapkpilldtgelkkpyawapeivdvqilriGqlvivavpgEvttmaGrRlreavke 454
                     ftq        +   +nplw+l r+++++ ps+eq++cq+pkpilld g +++py+wap+i+dvq lr G+l+i+++pgE+ttmaGrR+r++v++
      KKY22602.1 420 FTQaintsdtsSPALNNPLWALARDFIHN-PSAEQEACQSPKPILLDAGATTFPYQWAPNILDVQTLRAGSLIIIVSPGEATTMAGRRWRSKVAT 513
                     ***99876543335589********8777.***************************************************************** PP

                     HHGGGT...--EEEEE-SBSS---EE--HHHHHH--HHHHT-TT-TTHHHHHH CS
  Ceramidase_alk 455 alksegkk.eeevvlaglaNtYshYvtTeeEYqvQrYEgastlyGphtlsayi 506
                     a++      ++ vvl+g+aNtYshY++TeeEY+vQrYEgastl+Gph+l+a+i
      KKY22602.1 514 AATLDLGIdDPVVVLGGPANTYSHYIATEEEYSVQRYEGASTLHGPHSLEAHI 566
                     9998877559*****************************************97 PP

>> Ceramidse_alk_C  Neutral/alkaline non-lysosomal ceramidase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.5   0.1   3.7e-55   3.3e-51       4     168 .]     572     735 ..     569     735 .. 0.91

  Alignments for each domain:
  == domain 1  score: 173.5 bits;  conditional E-value: 3.7e-55
                      HHHHHHHT...-----------.-GG--B-S--------STT--TT-EEE---...SEET.T-EEEEEEEE--GGG---TTS-SEEEEEE...S CS
  Ceramidse_alk_C   4 laralaag.epeelkkgptPpdlsskqlslitgvvvDtaplgksFGdvltdve..ksyra.gdtvsvtFvganPrnnlrlegtFlaVerleeee 93 
                      ++++l +  + ++ ++gp+Pp +++ +ls+i gvv+D++ l ksFGdvlt+++  ++y+a g+  ++ Fv+anPrnnlrle+t++a+er+   +
       KKY22602.1 572 YLPYLESMsTAATIPAGPSPPINTNISLSFISGVVYDNPYLLKSFGDVLTNPSstTTYSAdGSHPTTVFVAANPRNNLRLEETYAAIERE---T 662
                      555555554457899**************************************755598889***************************8...4 PP

                      -S--EEEEETTSTTEEEEEEEET..TTEEEEEEEEE-..-T--SEEEEEEEEEEEE-TTT--EEEEEEE---EEE CS
  Ceramidse_alk_C  94 gkkWetvrtDadwetrfeWkrtssllgtsevtieWeipeedakaGtYRiryfGdaksslggkitpfeGtSseFtv 168
                      ++ Wet+rtD+dw++ f+W+rt++llgts+v + Wei++ +a++G YR+ry Gdak  + g+it+f+Gt  +Ftv
       KKY22602.1 663 NGAWETYRTDKDWSLLFKWNRTDELLGTSSVSLVWEIED-TAESGSYRMRYWGDAKD-ILGDITSFNGTGGTFTV 735
                      679**********************************44.79**************8.6689***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 4732.19
//
Query:       KKY22603.1  [L=384]
Description: hypothetical protein UCRPC4_g03298 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   15.0   3.4      0.034   14.1   3.4    1.5  1  TetR_C_14  MftR C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_C_14  MftR C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   3.4   1.9e-06     0.034      16      86 ..     165     236 ..     156     248 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.9e-06
                 ---GGGHHHHHHHHHHHHHSHHHHHHHH..HHHHHHHHHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHHHHH CS
   TetR_C_14  16 rvdeeeeeehrrRmrLiltvPaLqAhst..lryaawrevvAefvAeRtgtdaddlvprtvaaavlaaalaaye 86 
                 + deee+++h +R+rL  + PaL A s    r+a++ + +A   A+R+ ++a++ ++ + aaa+ a+ ++   
  KKY22603.1 165 DEDEEEDKQHSKRARLS-SPPALSASSPtpARHAKTTSSLAPGPARRITRSATAAAAAAAAAALPAVNVTTSS 236
                 56899**********96.68*****986226999********************9999999999998877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 2486.11
//
Query:       KKY22604.1  [L=425]
Description: putative mfs transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-31  110.1  14.0    1.1e-31  110.1  14.0    2.1  2  MFS_1        Major Facilitator Superfamily
    1.3e-13   50.7   6.6    1.3e-13   50.7   6.6    2.7  2  Sugar_tr     Sugar (and other) transporter
    0.00079   18.0   5.5     0.0016   17.0   5.5    1.5  1  TRI12        Fungal trichothecene efflux pump (TRI12)
     0.0099   14.5   0.2       0.32    9.6   0.0    2.1  2  AMP-binding  AMP-binding enzyme


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1  14.0   2.5e-35   1.1e-31      54     326 ..       2     331 ..       1     341 [. 0.81
   2 !    3.6   2.8    0.0056        25     212     277 ..     347     412 ..     336     417 .. 0.61

  Alignments for each domain:
  == domain 1  score: 110.1 bits;  conditional E-value: 2.5e-35
       MFS_1  54 rlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWra 152
                 +l++++Grr+v+++++ +++++++++++a+++  +l +r+++G++aga+  ++ + iad+f   erg  +++++a+ +lG+++g+++ g+++  l Wr+
  KKY22604.1   2 PLINKYGRRPVYVIAFSIYIITAVWCAVATQYANFLMARIVMGIAAGAGECLAPVTIADIFFLHERGAITAIYNASLNLGVAIGAIVDGFIVKDLPWRY 100
                 89********************777775555556***************************************************************** PP

       MFS_1 153 vfyilaivsllafvlfllllpeepperkrkspkeee.................................................kgtgpaplvp.... 198
                 ++y++ ++   + + +++ +pe++ +r+++++                                                     +        +    
  KKY22604.1 101 IYYVAIALIGAVTLTVYATFPETAYNRSPDPSGITTtltakpgahsihneesgepdkaedrpravvaqkrdllsglklyhgtfteE--------Svwam 191
                 ************99888888555555555554444456666777777777777788877777777777666666666555555533........04444 PP

       MFS_1 199 ...awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr............lgrrrrlllall 282
                    +  +l+ +pv+w+ l+++++++f +++++     +    +g++ ++++gl + ++ ++++ + +l+g +sd               ++ rl  +++
  KKY22604.1 192 afrPVMLLFLPPVFWATLVMSVTIGFLTAITSNVANAF-SAAYGFA-AWQSGLCFFAAVIGALLGIVLGGHFSDWvadyftkrndgiREPEMRLPAIMI 288
                 44469999999999***********************9.*******.8****999999999999999********999998888888777********* PP

       MFS_1 283 llllaalglallavtssavllllvlvliGfglgfvfpsllalas 326
                 +++++ l+lal +    ++ +++++ +iG+gl  ++++ ++ +s
  KKY22604.1 289 SVITGPLSLALYGCG-IKWQMHWIVPTIGIGLINFTITQATNVS 331
                 ***************.5555555666666666665555555554 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0056
       MFS_1 212 llialllfffgfsglltllplylqevlgls.glllaglllallalvgail..allagrls.drlgrrrrl 277
                 +++ l++ +++ ++l +++  + +  +g++ +    g + a+++ v ++   ++++g+ + +++ +++++
  KKY22604.1 347 VVTQLAFKSAFGFLLGFYTNPW-VNKHGYNvA---YGEMAAICGGVLIFWipFFIWGKTIrQKTISWKIM 412
                 4555555566777799999998.999999953...33344444444444455567777774664444443 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   6.6   2.9e-17   1.3e-13      68     194 ..       2     123 ..       1     128 [. 0.89
   2 ?   -6.5  14.1         4   1.8e+04      16     182 ..     208     393 ..     201     413 .. 0.59

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 2.9e-17
                 HHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS- CS
    Sugar_tr  68 llgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn 166
                 +l++++GR+++++ia  +++i av +a+a+   ++  ++++R+++Gi++G+  +l+P++i+ i   + Rga++ +y+ ++ +G  ++ai++ ++ k   
  KKY22604.1   2 PLINKYGRRPVYVIAFSIYIITAVWCAVAT---QYANFLMARIVMGIAAGAGECLAPVTIADIFFLHERGAITAIYNASLNLGVAIGAIVDGFIVKDLP 97 
                 689***************************...99********************************************************99988888 PP

                 TTHHHHHHHCCHHHHHHHHHHGGGS--- CS
    Sugar_tr 167 adgwrillglqlvpallllilllflPES 194
                  +++ + ++++l+ a++l +   ++PE+
  KKY22604.1  98 -WRYIYYVAIALIGAVTLTVY-ATFPET 123
                 .66777777777777555544.455666 PP

  == domain 2  score: -6.5 bits;  conditional E-value: 4
                 HHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHT....THHH......HHHH.HHHHHHHHHHHHH-TTTT.... CS
    Sugar_tr  16 tgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrf....GRkk......slli.aavlfvigavlqaaakgk.... 99 
                 t v+++++ +l +++ + ++  ++++  ++ +sgl++ ++++Ga++G +++g ++d++     +++       +   a++++vi + l+ a  g     
  KKY22604.1 208 TLVMSVTIGFLTAITSNVANAFSAAYGFAAWQSGLCFFAAVIGALLGIVLGGHFSDWVadyfTKRNdgirepEMRLpAIMISVITGPLSLALYGCgikw 306
                 555555555555555555555555454477899999999999999888877765554311114443111111222236666666665555544334555 PP

                 .SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-...TTHHHHHHHCCHHHHH CS
    Sugar_tr 100 .nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn...adgwrillglqlvpal 182
                   ++ v ++g  l+ + +  a++++ +y+     +    ++v+   +  +fG+l+++ ++  +nk ++     ++   +g  l++ +
  KKY22604.1 307 qMHWIVPTIGIGLINFTITQATNVSLVYTIDSYRPIAGEIVVTQLAFKSAFGFLLGFYTNPWVNKHGYnvaYGEMAAICGGVLIFWI 393
                 566667777777777777777777777777776666666677777777777777777777777555552433334444444444444 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   5.5   3.5e-07    0.0016     101     219 ..       3     121 ..       1     127 [. 0.76

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.5e-07
       TRI12 101 ltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpaga.splfvgelmsnktk..flgllivsipvvvtsglspylgqrlaiqgswr 196
                 l +++grrp+ +++  + ++ a+  + at++  +l a  ++g+aag   + +p+ + +++  + +  +  +   s+      +++  +   +  +  wr
  KKY22604.1   3 LINKYGRRPVYVIAFSIYIITAVWCAVATQYANFLMARIVMGIAAGAGEClAPVTIADIFFLHERgaITAIYNASLNL--GVAIGAIVDGFIVKDLPWR 99 
                 6789******9999********************************865438*****987655440044555555443..33456777777778889** PP

       TRI12 197 wifyiyiitsaiavllivvwyyp 219
                 +i+y+ i +   av+l v   +p
  KKY22604.1 100 YIYYVAIALI-GAVTLTVYATFP 121
                 ****988653.467777665555 PP

>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   7.1e-05      0.32      54     115 ..      93     157 ..      77     174 .. 0.70
   2 !    3.8   0.1     0.004        18     173     239 ..     161     231 ..     160     243 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 7.1e-05
                  ESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE..E.TCTCCCHHHHHHHHS CS
  AMP-binding  54 lpnspewvvallailkaGavvvplnptltaeelayiledseakvli..a.tvdselleklleaaa 115
                  ++  p  ++ ++ai+ +Gav+ ++++t+++ +     + s++++ +  +   +s+ +e++ e ++
   KKY22604.1  93 VKDLPWRYIYYVAIALIGAVTLTVYATFPETAYNRSPDPSGITTTLtaKpGAHSIHNEESGEPDK 157
                  5566777899**********************999999999999994313222233333333333 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.004
                  S-EEEEEEHHHHHHHHHHHH..HHHC..SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGC CS
  AMP-binding 173 kPKGVmlshrnlvanvaslk..letr..fklkeddvvlsilplahifglilelllallsGatvvllpkdaa 239
                  +P +V+   r l++ ++ ++  ++++  + +  + v+l +lp ++ + l++++ + +l   t  +++ ++a
   KKY22604.1 161 RPRAVVAQKRDLLSGLKLYHgtFTEEsvWAMAFRPVMLLFLPPVFWATLVMSVTIGFLTAITSNVANAFSA 231
                  5888888889998888887776444445556559**************99****99999999998887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       873  (0.0486921); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 2709.23
//
Query:       KKY22605.1  [L=272]
Description: putative alpha beta hydrolase fold family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-26   91.1   0.0    1.3e-25   90.1   0.0    1.4  1  Hydrolase_4      Serine aminopeptidase, S33
    6.8e-21   75.1   0.1    1.1e-16   61.3   0.1    2.0  2  Abhydrolase_1    alpha/beta hydrolase fold
    3.1e-20   73.7   0.0    4.1e-20   73.3   0.0    1.1  1  Abhydrolase_6    Alpha/beta hydrolase family
    2.4e-09   36.5   0.0    3.7e-09   35.9   0.0    1.3  1  Chlorophyllase2  Chlorophyllase enzyme
    5.8e-08   32.8   0.2    0.00062   19.7   0.1    2.2  2  Ser_hydrolase    Serine hydrolase
    1.6e-06   27.8   0.0      0.055   13.0   0.1    2.5  2  DLH              Dienelactone hydrolase family
    3.4e-06   26.9   0.1     0.0012   18.6   0.1    2.5  2  Abhydrolase_5    Alpha/beta hydrolase family
      6e-06   26.2   0.1     0.0065   16.3   0.0    2.9  3  Abhydrolase_2    Phospholipase/Carboxylesterase
    3.8e-05   23.9   0.0    4.4e-05   23.7   0.0    1.2  1  Thioesterase     Thioesterase domain
    0.00012   21.2   0.0    0.00018   20.7   0.0    1.2  1  Chlorophyllase   Chlorophyllase
    0.00062   19.3   0.0      0.063   12.8   0.0    2.2  2  Peptidase_S9     Prolyl oligopeptidase family
     0.0012   18.0   0.0     0.0016   17.6   0.0    1.1  1  DUF1057          Alpha/beta hydrolase of unknown function (DU
     0.0015   18.3   0.2     0.0027   17.5   0.0    1.6  1  PGAP1            PGAP1-like protein
     0.0035   17.3   0.1     0.0094   15.9   0.1    1.9  1  UPF0227          Uncharacterised protein family (UPF0227)
     0.0074   15.6   0.0     0.0092   15.3   0.0    1.1  1  Lipase           Lipase
     0.0088   15.9   0.0       0.01   15.7   0.0    1.3  1  Abhydrolase_3    alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.014   15.1   0.0      0.023   14.4   0.0    1.3  1  Esterase         Putative esterase
      0.017   14.7   0.0      0.059   12.9   0.0    1.8  2  LIDHydrolase     Lipid-droplet associated hydrolase
      0.019   13.5   1.9      0.067   11.7   0.2    2.1  2  PAF-AH_p_II      Platelet-activating factor acetylhydrolase, 
      0.028   14.3   0.0      0.049   13.5   0.0    1.3  1  BAAT_C           BAAT / Acyl-CoA thioester hydrolase C termin
      0.077   12.6   0.0        0.7    9.5   0.0    2.3  2  FSH1             Serine hydrolase (FSH1)
       0.14   11.8   0.3       0.34   10.6   0.1    1.6  2  DUF131           Protein of unknown function DUF131


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.0   1.6e-28   1.3e-25       2     232 ..      26     249 ..      25     255 .. 0.84

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 1.6e-28
  Hydrolase_4   2 epkavvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypd 99 
                  +p+ ++v++HGl+++s+ ya l+  Laa+Gf+++a+D  G  +s   +g+ +++ ++ +D+a++++++    + ++ +++GhSmGG++a+ ++ r++ 
   KKY22605.1  26 DPRLTLVFIHGLGSSSSFYAPLIPGLAAAGFSCLAIDTYGSCQS-EYTGQNQDIRSIAEDVACLLSALDV--SLKQTVIVGHSMGGIVACDLASRHEV 120
                  6899****************************************.8999999************998884..445669******************98 PP

  Hydrolase_4 100 kvaglilsaPalkikakl.k.appllklllkllgkllpklqvsnnlkadslsrdpevvaayeadplvhgkitvrlllelldamkrle.eraakitlPl 194
                    ag++l++P+l  +a +    +++  + l+ + +++ +++v   l ++s   ++++v+a+   +       ++ + +l+d+++++   + ++++ Pl
   KKY22605.1 121 --AGVVLIGPVLPDPATTaAfEKRIETVKLRGMEEMADTIPV-TALGSKSTKTQQAFVRALILSQS------TEGYISLCDVIAKASpPDFSQMKSPL 209
                  ..*********9777665445566777788999999999999.66888888888888886655444......4555667777777761567999**** PP

  Hydrolase_4 195 lllhGeaDkvvdpeasrelyerlgsk..dktlklypglyH 232
                  l++ G++Dkv + e+s++++++ g k  + +l++ +g  H
   KKY22605.1 210 LVIAGQEDKVAPFEGSQKIINSWGTKevRPKLEVLEGVGH 249
                  ************************9933445666777666 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.1   1.4e-19   1.1e-16       3     123 ..      31     146 ..      30     176 .. 0.80
   2 !   12.4   0.0   0.00011     0.091     206     256 ..     184     255 ..     155     256 .. 0.72

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 1.4e-19
                    EEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTT..SSEEEEEETHHHHHHHHHHHHHGG CS
  Abhydrolase_1   3 lvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgd..dkltlvGhSmGGmialayaaeype 96 
                    lv++hGl+ ss  +a   l+p+La +gf ++++D  G+++S+       +d +  s+a+d+  +l al++  ++ ++vGhSmGG +a+ +a++  +
     KKY22605.1  31 LVFIHGLGSSSSFYAP--LIPGLAAAGFSCLAIDTYGSCQSEYTGQN--QDIR--SIAEDVACLLSALDVslKQTVIVGHSMGGIVACDLASR--H 118
                    9***************..***********************999976..5555..5********999975337888****************8..8 PP

                    GEEEEEEESE.CSSCCHHHHHHHHHHHH CS
  Abhydrolase_1  97 rVkalvllga.idpaaslieaqrqqaks 123
                     V+++vl+g+ ++++a +   ++++   
     KKY22605.1 119 EVAGVVLIGPvLPDPATTAAFEKRIETV 146
                    9*********655555555555554444 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00011
                    C.................THHHHSEEEEEEETTCSSSCH.HHHHHHHHC.....HTSEEEEEEETCSSSHHHHS CS
  Abhydrolase_1 206 e.................lknvlaptlvisgtsDplvpp.kaledlaql.....lpkkrlvvisdagHlafleg 256
                                      ++++++p lvi+g++D+++p  +++  ++++         +l+v+++ gH+ ++e 
     KKY22605.1 184 TegyislcdviakasppdFSQMKSPLLVIAGQEDKVAPFeGSQKIINSWgtkevR--PKLEVLEGVGHWHCIEA 255
                    2444445555555777778899*****************6777777777755433..4699999****988875 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.0   5.1e-23   4.1e-20       1     217 [.      31     259 ..      31     260 .. 0.63

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 5.1e-23
                    EEEE--GC.....GCHHHH.HHHHCCTCEEEEE--TTSTS-GGCS--HHH......CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC..E CS
  Abhydrolase_6   1 vlllHGagssassWlvapL.aallaagvhvlapDlpGhGrsdpppldled......ladlaalldelaagggpvvlvGHSlGGalalaaaplalvv 89 
                    ++++HG+gss+s ++  pL   l+aag+ +la+D  G      + ++ ++      ++d+a ll +l+ + ++ v+vGHS+GG++a+ +a+   v+
     KKY22605.1  31 LVFIHGLGSSSSFYA--PLiPGLAAAGFSCLAIDTYGS---CQSEYTGQNqdirsiAEDVACLLSALDVSLKQTVIVGHSMGGIVACDLASRHEVA 121
                    79******9989885..6658888888888*****998...333333333111113455566666666588999**************88888999 PP

                    E.EEES-..----TTT.S----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHHCCCCHCHCCCGHH......HHCCHHC...HTTCCHHTT-TTGCE CS
  Abhydrolase_6  90 g.vlldppptalpagl.laaalelllallallrllawlsreplprlfladedadaawrarlarla......allaglg...llpaaawadlpvpll 174
                    g vl+ p   +lp++   aa+ + ++++  + +  ++  + p++  + ++ +   + +a +++l        + + ++     +++++ ++ +pll
     KKY22605.1 122 GvVLIGP---VLPDPAtTAAFEKRIETVKLRGME-EMADTIPVT-ALGSKST--KTQQAFVRALIlsqsteGYISLCDviaKASPPDFSQMKSPLL 210
                    99*****...888888555555555555553333.333222233.6766444..44444444444333333222222233333588*********9 PP

                    EEC.TT-CHHHHCHHCCCH.STTEEET......CE...SSS-HHHHSHHHH CS
  Abhydrolase_6 175 vlg.geDplvprllerlla.qagarlp......vvlpgaGHlphleepdev 217
                    v++  eD++ p  +e     +++++++      +vl+g GH++ +e++++v
     KKY22605.1 211 VIAgQEDKVAP--FEGSQKiINSWGTKevrpklEVLEGVGHWHCIEAAEKV 259
                    99615555555..33333343444443333578*********999666765 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   4.5e-12   3.7e-09      20     169 ..      31     174 ..      25     198 .. 0.79

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 4.5e-12
  Chlorophyllase2  20 llflhGylllnslYsqlLkhiashgfivvapqlyk.vaeada...keiksaakvlnWlakgLesvlpeevepdlsklalsgHSrGgktafalal 109
                      l+f+hG+   +s+Y  l+  +a  gf  +a  +y  ++++ +   ++i+s+a+ +  l         + +   l++++++gHS Gg +a +la 
       KKY22605.1  31 LVFIHGLGSSSSFYAPLIPGLAAAGFSCLAIDTYGsCQSEYTgqnQDIRSIAEDVACLL--------SALDVSLKQTVIVGHSMGGIVACDLAS 116
                      89*****************************9999422222211244444444444444........45567899999**************** PP

  Chlorophyllase2 110 gkaktslkfsaligvdPvagaskskqtepkiLtyepesfnlkmpvlviGtgLgeekknal 169
                       ++ + + +   +  dP + a+ +k++e   L ++ e    ++pv  +G++ ++++++a+
       KKY22605.1 117 RHEVAGVVLIGPVLPDPATTAAFEKRIETVKLRGMEEMA-DTIPVTALGSK-STKTQQAF 174
                      ****99999999999999999999999999999998887.68*******99.44444443 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   7.6e-07   0.00062      43      98 ..      85     139 ..      72     167 .. 0.79
   2 !   11.3   0.0   0.00028      0.23      97     145 ..     189     237 ..     157     256 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 7.6e-07
                    HHHHHHHHHC-STTEEEEEETCHHHHHHHHHHHTTSSSEEEEEEET--SGG..S..TT CS
  Ser_hydrolase  43 vaaleaaveaaeekvvlvAHSlgclavlhaaelqlakkvagalLVapadve..eeaak 98 
                    va l +a++ + +++v+v HS+g ++++ +a   ++++vag++L+ p  ++  ++aa 
     KKY22605.1  85 VACLLSALDVSLKQTVIVGHSMGGIVACDLA---SRHEVAGVVLIGPVLPDpaTTAAF 139
                    66677888999999***************99...99***********76642233333 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00028
                    TT.GGGCGCTTS-SSHHCCHCEEEEETTBTTC-HHHHHHHHHHCT-EEE CS
  Ser_hydrolase  97 aklaelaefaplpreklpfpslvvaSenDpyvsfeeaeelaeawgaelv 145
                    +  + +a+++p   ++++ p lv+a ++D++ +fe ++++ ++wg + v
     KKY22605.1 189 SLCDVIAKASPPDFSQMKSPLLVIAGQEDKVAPFEGSQKIINSWGTKEV 237
                    55567788899999999999*************************8754 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   6.8e-05     0.055      78     133 ..      78     131 ..      48     150 .. 0.80
   2 !   12.2   0.0   0.00012     0.099     141     187 ..     203     249 ..     194     259 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.8e-05
         DLH  78 vlddlkaavaylksvpevstkkvgvvGfCmGGalalllaaevpevdaavafYGlsp 133
                 + +++   va l s  +vs k+ ++vG  mGG +a +la++  ev+++v   ++ p
  KKY22605.1  78 IRSIA-EDVACLLSALDVSLKQTVIVGHSMGGIVACDLASRH-EVAGVVLIGPVLP 131
                 44444.67778888888999**********************.6999887666444 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00012
         DLH 141 akikapilalfgeeDefipadevekleealkaanvdlelkvYpgagH 187
                  ++k p+l+++g+eD++ p++  +k+ +   +++v  +l+v +g+gH
  KKY22605.1 203 SQMKSPLLVIAGQEDKVAPFEGSQKIINSWGTKEVRPKLEVLEGVGH 249
                 689******************************************** PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   1.5e-06    0.0012      55      89 ..      95     128 ..      30     154 .. 0.82
   2 ?    5.8   0.0     0.013        10      84     121 ..     193     227 ..     178     251 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.5e-06
  Abhydrolase_5  55 klekfvvgGhslGGvvasrfaaeeekiegvvflas 89 
                    +l++ v+ Ghs+GG+va  +a+++e + gvv+++ 
     KKY22605.1  95 SLKQTVIVGHSMGGIVACDLASRHE-VAGVVLIGP 128
                    46789****************9997.589999874 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.013
  Abhydrolase_5  84 vvflasYPekdelselskkvlsivgteDgvlnvkslek 121
                    v+  as P   ++s+++ ++l i g+eD v++++  +k
     KKY22605.1 193 VIAKASPP---DFSQMKSPLLVIAGQEDKVAPFEGSQK 227
                    55556666...599******************998777 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.018        15      14      27 ..      28      41 ..      23      48 .. 0.82
   2 !   16.3   0.0     8e-06    0.0065      84     185 ..      75     174 ..      49     188 .. 0.75
   3 ?    0.9   0.0      0.42   3.4e+02     156     209 ..     206     259 ..     191     267 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.018
                   -EEEEEE--TT--S CS
  Abhydrolase_2 14 qavviflHGlGdsg 27
                   + +++f+HGlG+s 
     KKY22605.1 28 RLTLVFIHGLGSSS 41
                   5699*******986 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 8e-06
                    HHHHHHHHHHHHHHHHTT.--GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGGTTTTS-GGGGG-EEEEEEETT-SSS-H.HHHHH CS
  Abhydrolase_2  84 kksaekleelidaelkkg.ipssriiigGFSqGaalalylaltlpkklggivafsgalplsqklessatavtkklpilqiHgeeDpvvpl.algka 177
                    ++ ++++ e +   l++  +  ++++i+G S+G+++a    l+++++++g+v ++ +lp +++++    ++  ++  l++  e+  ++p+ alg++
     KKY22605.1  75 NQDIRSIAEDVACLLSALdVSLKQTVIVGHSMGGIVACD--LASRHEVAGVVLIGPVLPDPATTAAFEKRI--ETVKLRGMEEMADTIPVtALGSK 166
                    55556666666666666678999*************987..6799**************999999644444..47777777777788886346777 PP

                    HHHHHHTT CS
  Abhydrolase_2 178 akevlkkl 185
                    + +  +++
     KKY22605.1 167 STKTQQAF 174
                    76666665 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.42
                    G-EEEEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEEEETT--SS--HHHHHHH CS
  Abhydrolase_2 156 klpilqiHgeeDpvvplalgkaakevlkkllkkvelksyeglaHsideeemqdi 209
                    k p l i g+eD+v p+  +++  +   +   + +l+++eg++H  + e  +++
     KKY22605.1 206 KSPLLVIAGQEDKVAPFEGSQKIINSWGTKEVRPKLEVLEGVGHWHCIEAAEKV 259
                    578889999********9999998888888889999999999999998877766 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   5.4e-08   4.4e-05       2     101 ..      30     127 ..      29     247 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 5.4e-08
                   EEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTST....SHHHCTTCHHHHHHHHHHHHHHH-SSS.SEEEEEETHHHHHHHHHHHHHHHCT-S CS
  Thioesterase   2 pLflfppagGsasvfrslasklsdpvvevlavqlpgre....rdepplesieelaaeyaealrqiqpeg.PyalfGhSlGgllAfevArqLesqGla 93 
                   +L+  ++ g s+s+++ l   l +    +++++   ++    + +  +++i ++a+ +a  l +       ++++GhS+Gg++A ++A++ e  G  
    KKY22605.1  30 TLVFIHGLGSSSSFYAPLIPGLAAA--GFSCLAIDTYGscqsEYTGQNQDIRSIAEDVACLLSALDVSLkQTVIVGHSMGGIVACDLASRHEVAG-- 122
                   578888888899********99996..77777766666656655667889999999988888777666558******************965554.. PP

                   EEEEEEES CS
  Thioesterase  94 vkslflid 101
                      ++li+
    KKY22605.1 123 ---VVLIG 127
                   ...44444 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.2e-07   0.00018      49     189 ..      31     166 ..      25     185 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.2e-07
  Chlorophyllase  49 vlflhGtllsnkfyskllnhiashGfivvaPqlykllpPsaqdeidsaaevieWlseglkavlptsveanlsklalvGhsrGGktafalalgyss 143
                     ++f+hG   s +fy+ l+  +a+ Gf  +a   y +   + + + ++  +++e ++  l     +  +  l+++ +vGhs GG  a  la ++  
      KKY22605.1  31 LVFIHGLGSSSSFYAPLIPGLAAAGFSCLAIDTYGSCQSEYTGQNQDIRSIAEDVACLL-----SALDVSLKQTVIVGHSMGGIVACDLASRHE- 119
                     78********************************9999776666666666666665444.....34566788899***************9998. PP

  Chlorophyllase 144 eltfsaliG...vdPvaGtskdkrtdPsvltykpnsfnleiPvtviGsG 189
                      +    liG    dP    + +kr++   l    + +   iPvt +Gs 
      KKY22605.1 120 -VAGVVLIGpvlPDPATTAAFEKRIETVKLRG-MEEMADTIPVTALGSK 166
                     .4434444421136666666666665544443.3444445888888875 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.026        21      53      79 ..      86     112 ..      47     127 .. 0.72
   2 !   12.8   0.0   7.7e-05     0.063     132     189 ..     195     252 ..     180     272 .] 0.83

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.026
                   HHHHHTTS--GGGEEEEEETHHHHHHH CS
  Peptidase_S9  53 ealakegyvdserlaitGgSyGGyltg 79 
                     l +   v+ ++ +i G+S GG ++ 
    KKY22605.1  86 ACLLSALDVSLKQTVIVGHSMGGIVAC 112
                   4445555788999**********9865 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 7.7e-05
                   HHH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTT CS
  Peptidase_S9 132 spyspldnvkaypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvg 189
                   +++sp d  + + plL+i G++D+  p++ + k+++    k +  +l +  + gH+  
    KKY22605.1 195 AKASPPDFSQMKSPLLVIAGQEDKVAPFEGSQKIINSWGTKEVRPKLEVLEGVGHWHC 252
                   5667777767899******************************************854 PP

>> DUF1057  Alpha/beta hydrolase of unknown function (DUF1057)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.9e-06    0.0016      94     136 ..      86     129 ..      60     169 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.9e-06
     DUF1057  94 kalleelelk.gklillghsRGcenaLqlavtleahGlvlinpt 136
                   ll  l+++ ++ +++ghs G+  a  la+  e+ G+vli p 
  KKY22605.1  86 ACLLSALDVSlKQTVIVGHSMGGIVACDLASRHEVAGVVLIGPV 129
                 479*******9999***************************986 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.3e-06    0.0027      89     109 ..      95     115 ..      68     158 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.3e-06
       PGAP1  89 eptsviliGHSmGGivaraal 109
                   ++ +++GHSmGGiva  ++
  KKY22605.1  95 SLKQTVIVGHSMGGIVACDLA 115
                 567789***********5444 PP

>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   1.2e-05    0.0094      58     103 ..      96     145 ..      30     235 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-05
     UPF0227  58 ddnillvGssLGGyyatrlgerfglrq.vllnPal...kplenlagklge 103
                  ++ ++vG s+GG +a  l+ r+ ++  vl+ P l   + +  ++++++ 
  KKY22605.1  96 LKQTVIVGHSMGGIVACDLASRHEVAGvVLIGPVLpdpATTAAFEKRIET 145
                 24499*********************944455543111223334444444 PP

>> Lipase  Lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.1e-05    0.0092     103     162 ..      57     112 ..      26     149 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
                 EEEEEE-HHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHH---GGGEEEEEETCHHHHHH CS
      Lipase 103 nvivvdwksgsealyaqavenirvvgaevakllseLeeelnyseenvhliGsslgaHvaG 162
                  + ++d     +++y+   + ir ++++va lls+L     +s ++  ++G+s+g  va 
  KKY22605.1  57 SCLAIDTYGSCQSEYTGQNQDIRSIAEDVACLLSALD----VSLKQTVIVGHSMGGIVAC 112
                 6899*****************************9988....9999999*******99986 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.3e-05      0.01      25     127 ..      52     155 ..      31     250 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.3e-05
                    HHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE.....-SST... CS
  Abhydrolase_3  25 akelgavvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardegepkvagqvliyP.....vtdl... 112
                    a+ +g  ++++d   + +  +  + +d+ ++++ +a   ++l +  ++ v++G S GG  a  +a r       +vag+vli P     +t++   
     KKY22605.1  52 AA-AGFSCLAIDTYGSCQSEYTGQNQDIRSIAEDVACLLSALDVSLKQTVIVGHSMGGIVACDLASRH------EVAGVVLIGPvlpdpATTAafe 140
                    44.677777777777888888889999999999999998899****************9999888443......4677777777322223322233 PP

                    SSTTSHHHHHCHHTT CS
  Abhydrolase_3 113 ertesesikkaeela 127
                    +r e+ + +  ee+a
     KKY22605.1 141 KRIETVKLRGMEEMA 155
                    333333333333333 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.8e-05     0.023      98     136 ..      81     118 ..      50     120 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.8e-05
                 HHTHHHHHHHHHCSEECCCEEEEEETHHHHHHHHHHHCS CS
    Esterase  98 ltqeLlplldanfrtapdgravaGqSmGGlgALilalkh 136
                 +++ ++ ll a   + ++ ++++G+SmGG +A  la++h
  KKY22605.1  81 IAEDVACLLSALDVSLKQ-TVIVGHSMGGIVACDLASRH 118
                 555555555555555555.9************9998887 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.2e-05     0.059       8     126 ..      34     135 ..      27     185 .. 0.71
   2 ?   -0.6   0.0      0.96   7.8e+02     221     263 ..     205     249 ..     190     252 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.2e-05
  LIDHydrolase   8 ipGNPGlveFYetFlsllseklnpelevlgishaGfeleeeekeakenekvfsLedQiehkedflkellekaksekdvklilvGHSvGaYialevlk 104
                   i G    ++FY + +  l+      ++ l+i   G +++e      +n+++ s+ + +    + l+  l+        + ++vGHS G  +a  +++
    KKY22605.1  34 IHGLGSSSSFYAPLIPGLAAA---GFSCLAIDTYGSCQSEYT---GQNQDIRSIAEDVACLLSALDVSLK--------QTVIVGHSMGGIVACDLAS 116
                   555555556666666666665...566666666666655555...5666666666666666666666665........789**************99 PP

  LIDHydrolase 105 rlsersikkvvlLfPtiediak 126
                   r++     +vvl+ P++ d a+
    KKY22605.1 117 RHEV---AGVVLIGPVLPDPAT 135
                   9876...699999999887555 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.96
  LIDHydrolase 221 nkekalvfyfgkkDhWvpeetrdelkellge....eklevde.kgipH 263
                    k+  l+++ g++D+ +p e  ++++++ g     +kle  + +g+ H
    KKY22605.1 205 MKSP-LLVIAGQEDKVAPFEGSQKIINSWGTkevrPKLE--VlEGVGH 249
                   3444.99999*****************999966444444..4466666 PP

>> PAF-AH_p_II  Platelet-activating factor acetylhydrolase, isoform II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   8.2e-05     0.067     103     134 ..      31      62 ..      13      86 .. 0.87
   2 ?    1.0   0.1      0.14   1.2e+02     227     242 ..      96     111 ..      82     122 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.2e-05
                  EEEE--TT--TTTTHHHHHHHHHTT-EEEEE- CS
  PAF-AH_p_II 103 ivFsHGLgafRtlYsalcielAskGfvvaavE 134
                  +vF HGLg++ ++Y+ l   lA+ Gf  +a++
   KKY22605.1  31 LVFIHGLGSSSSFYAPLIPGLAAAGFSCLAID 62 
                  79************************998876 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.14
                  EEEEEEEEETHHHHHH CS
  PAF-AH_p_II 227 tskvaviGHsFGgAtv 242
                   ++ +++GHs Gg  +
   KKY22605.1  96 LKQTVIVGHSMGGIVA 111
                  457899******9765 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     6e-05     0.049      13     161 ..      88     249 ..      80     255 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6e-05
                 HHCSTTB--SSEEEEEETHHHHHHHHHHHHSSSEEEEEEES--SB--SSEEEETTE................EE----B-GGG-EE...-TTS-EE-TT CS
      BAAT_C  13 llrhpkvkkdkigllGiSkGgelalllasflkkisavvlingsavvvegklvykdes..............kvlpelklsmeklkv...nknglldivd 94 
                 ll+   v+ ++  ++G+S Gg +a  las++ ++  vvli +     ++++++++++               +++ l+ +++k+++   ++  l ++++
  KKY22605.1  88 LLSALDVSLKQTVIVGHSMGGIVACDLASRH-EVAGVVLIGPVLPDPATTAAFEKRIetvklrgmeemadtIPVTALGSKSTKTQQafvRALILSQSTE 185
                 55555666677889***************96.7999999999888888888888887888899999888554444455444444446663333333333 PP

                 -B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT--.--EEEEETTB-S CS
      BAAT_C  95 vlallkeklaekalipvekakgpillvvgedDknwpSkesaekaserLkkagkkvevqlltYpkaGH 161
                    +l +  a+ +  ++ + k+p+l+++g++Dk+ p + s +++    +k+ ++ ++++l  ++ GH
  KKY22605.1 186 GYISLCDVIAKASPPDFSQMKSPLLVIAGQEDKVAPFEGSQKIINSWGTKEVRP-KLEVL--EGVGH 249
                 33333344445555589999****************999998888777777776.77777..77776 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       4.1   3.3e+03       6      21 ..      30      45 ..      27      52 .. 0.82
   2 ?    9.5   0.0   0.00086       0.7      80     189 ..      75     234 ..      60     249 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.1
        FSH1  6 kiLcLhGytqsgeiFr 21
                ++ ++hG ++s+++++
  KKY22605.1 30 TLVFIHGLGSSSSFYA 45
                67899****9999875 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00086
        FSH1  80 kneyegleesldavkdyikengpfdGiiGFSqGaalaallaslleellkea..............................shpslkfailvsGfklee 148
                 +++++++ e ++++  +++ +   + i+G S G+++a  las  e                                    +     + + + G k+++
  KKY22605.1  75 NQDIRSIAEDVACLLSALDVSLKQTVIVGHSMGGIVACDLASRHEVAGVVLigpvlpdpattaafekrietvklrgmeemaD----TIPVTALGSKSTK 169
                 6677778888888888888888888888888888888888888876655447777777777777777777777765533330....3344444444444 PP

        FSH1 149 pk......................yeeyy..eedkiqtptLhvlGelDtvvdeerseaLaeafkn 189
                 ++                       +++   + ++++ p L + G++D+v + e s+++++++  
  KKY22605.1 170 TQqafvralilsqstegyislcdvIAKASppDFSQMKSPLLVIAGQEDKVAPFEGSQKIINSWGT 234
                 44555555555555555555555522222223356699**************9999999987655 PP

>> DUF131  Protein of unknown function DUF131
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00041      0.34      20      33 ..     116     129 ..     106     130 .. 0.92
   2 ?   -3.0   0.0       7.4     6e+03      36      54 ..     162     180 ..     158     181 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00041
      DUF131  20 srvkgGGVvliGPI 33 
                 sr +++GVvliGP+
  KKY22605.1 116 SRHEVAGVVLIGPV 129
                 899**********7 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7.4
      DUF131  36 iFGsdkrlaktaiiLaIil 54 
                  +Gs +  ++ a++ a+il
  KKY22605.1 162 ALGSKSTKTQQAFVRALIL 180
                 5788888888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.54u 0.34s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 1822.08
//
Query:       KKY22606.1  [L=558]
Description: putative caib baif family enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-39  136.2   0.0    4.8e-39  134.5   0.0    1.8  2  CoA_transf_3  CoA-transferase family III


Domain annotation for each model (and alignments):
>> CoA_transf_3  CoA-transferase family III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0     0.057     1e+03     268     327 ..     171     223 ..      59     235 .. 0.78
   2 !  134.5   0.0   2.7e-43   4.8e-39       1     198 [.     252     443 ..     252     459 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.057
  CoA_transf_3 268 rfatnasrlenraeldaelaewlaertaaewlellaaagvpaapvntleevlddpqlaar 327
                   ++       e ++++  e+++ ++  +++e+++l  +++ +  p  + e +l+ p+ + +
    KKY22606.1 171 DL-------EDHEAIVSEIESHVKRFDTTELEDLNWRHRQAGVPALKHEGFLETPHGKTN 223
                   33.......344558888999999999999999888888888888888888888887766 PP

  == domain 2  score: 134.5 bits;  conditional E-value: 2.7e-43
  CoA_transf_3   1 LaGvrVldlsqvlaGplatslLAdlGAeVIkvEppkkgDpaRkvgpseekgesayflavnrnKrsvalDlkseegrellkrLvakADVvieNfrpgv 97 
                   L+G++Vl+l++++aGp+++++LA++GA+V k+ +p+  D    v          + +  n +K    +Dlk++egr++++ L+ +ADVv++ +rpg+
    KKY22606.1 252 LSGIKVLELCRIIAGPVIGRILAEYGADVLKITSPRLSD----V--------PFFQVDGNMGKHAAEVDLKTKEGRRVFEGLLVDADVVLDGYRPGA 336
                   89*********************************5555....2........34446679************************************* PP

  CoA_transf_3  98 lerlglgyeelrain....PrLiyasvsgyGqsGpkakrpgyDlvaqaasGlmsltge..pdgpPvkvgvplgDivtgllaavailaallarertGk 188
                   l++lg g+++l +i       ++y++ + +G +G++ +rpg++++a +++G+++ +g     ++P+ + +p+ D+ tg ++a+ +l  l++r  +G 
    KKY22606.1 337 LKKLGYGANALTEIArnrgKGIVYVNENCFGYQGEWCQRPGWQQIADCVTGVAWEQGRfmGLNEPLVPPFPISDYGTGCMGAITALTGLYHRATQGG 433
                   **********98875223368**********************************9985455679*****************************998 PP

  CoA_transf_3 189 Gqvidvslle 198
                     + +vsl++
    KKY22606.1 434 SWHGKVSLMQ 443
                   8888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3691.33
//
Query:       KKY22607.1  [L=978]
Description: putative glycoside hydrolase family 115 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.9e-135  451.7   0.9   1.9e-135  451.7   0.9    1.7  2  Glyco_hydro_115  Glycosyl hydrolase family 115
    1.1e-59  201.2   0.3    2.2e-59  200.1   0.2    1.7  2  GH115_C          Gylcosyl hydrolase family 115 C-terminal dom


Domain annotation for each model (and alignments):
>> Glyco_hydro_115  Glycosyl hydrolase family 115
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  451.7   0.9  2.1e-139  1.9e-135       1     339 []     184     524 ..     184     524 .. 0.97
   2 ?   -2.2   0.8      0.25   2.2e+03      58     121 ..     590     650 ..     535     661 .. 0.50

  Alignments for each domain:
  == domain 1  score: 451.7 bits;  conditional E-value: 2.1e-139
                      .E--SSSEEEEE--SGCCCHHHHHHHCCS-.....SSSHHHHHHHHHHHHHTT--EEE---TS--HHHHSTCHHHHHHHHT-EE---TTSTTT- CS
  Glyco_hydro_115   1 qgepsvkYRGiFiNDedpalsnWakekfge.....kinkefyekvfellLRlkaNylwpamwssafaeddpenqklAdeygivmgtsHaepllr 89 
                      qg+psvkYRGiF+NDe+pal+nW++e++ +     ++n++fy++vfellLRl+aNylwp+mw+s+f++dd ++q lAd ygivmgtsH+ep++r
       KKY22607.1 184 QGPPSVKYRGIFLNDEQPALNNWVQENYPDgeygpGFNADFYSHVFELLLRLRANYLWPTMWASMFNVDDGRSQPLADYYGIVMGTSHTEPMMR 277
                      579*************************999*************************************************************** PP

                      -HHHHHHSH--S-S-HHHHHHHHHHHHHHHHHHHTTS-B-EE-S---TTCCG-SSHHHHHHHHHHHHHHHHHHHHHHHHCTS.SGGGS-EEE-- CS
  Glyco_hydro_115  90 atveewkkkkkgewdystnkealkeywregverakklesvvtlGmRGegDealelaeeeakielleeviadQrkilkevvgk.dveevpqvltl 182
                      a++ e +   +g+wd+stn+  ++e++++g+erak++es++t+GmRG gD a   +  + +++ l  ++++Q++il++v+++ +++++pq+++l
       KKY22607.1 278 ASI-EQSLFLNGSWDWSTNNVSVYEFMKDGAERAKPYESLFTMGMRGYGDVA---SP-TITADSLGLIVQAQQEILQDVFKTtNTSTIPQMWCL 366
                      **5.558899******************************************...43.46899****************77758899******* PP

                      -TCHHHHHHTT----TTSEEEEEB-SSS-BS----CCHHHSTT-EEEEEESSB-SSS--B-SS----HHHHHHHHHHHHHTT--SEEEEE-TTS CS
  Glyco_hydro_115 183 YkEvqelyeaglkvpddvtllwaDdnygnvrrlpteeerkrkggaGvYYhfdyvgsprsykwlntvqlekiweqlkkayergadklwivNvgdl 276
                      YkEv  +y++gl++pdd+t+lw+Ddn+g + r+p ++e++r+ggaGvYYhfdyvg+pr+ykw+nt++le++w+q+ +ay+++a+++w+vNvgdl
       KKY22607.1 367 YKEVGGYYQEGLRIPDDITMLWSDDNWGAISRVPLANETSRSGGAGVYYHFDYVGDPRDYKWINTISLERTWQQMYMAYQTKATQIWVVNVGDL 460
                      ********************************************************************************************** PP

                      TT-HHHHHHHHHHHH-HHHC.HCGGHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHCCS-GGG CS
  Glyco_hydro_115 277 kpleleisffldlawdaekv.kaekveeflkawaereFgeeeaeeiaeilekysklaarrkpEl 339
                      kple++i++fldla+d++ + +++++ ++l++wa+reFg++ a+e+a+i+++y  +aarrk+El
       KKY22607.1 461 KPLEVPINHFLDLAYDTTLYtSPNSTIQWLEWWASREFGSAVASEVADIMDTYGFYAARRKYEL 524
                      ******************99666999************************************96 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.25
                      S--HHHHSTCHHHHHHHHT-EE---TTSTTT--HHHHHHSH--S-S-HHHHHHHH.HHHHHHHHH CS
  Glyco_hydro_115  58 ssafaeddpenqklAdeygivmgtsHaepllratveewkkkkkgewdystnkeal.keywregve 121
                      ++++++  ++ +  A+++  +  t  ++  + +  +++++  +g+w+++ ++ +l ++yw++ ++
       KKY22607.1 590 KNNLYA--EQRRTSANTWAEYARTAFHKDHAIT--QRYHQLLDGKWNHMMDQTHLgYDYWQQPMR 650
                      444444..2333334333333333322222222..246667778888877666664678877665 PP

>> GH115_C  Gylcosyl hydrolase family 115 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.0       1.5   1.4e+04      91     118 ..     193     221 ..     184     227 .. 0.79
   2 !  200.1   0.2   2.5e-63   2.2e-59       1     172 []     801     974 ..     801     974 .. 0.98

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 1.5
                 EEEETTS--EEEETTTT-.....-HHHHH CS
     GH115_C  91 avslDdeepqtvdlvpde.eagslpegWe 118
                 ++ l+de+p   + v+++ + g++ +g++
  KKY22607.1 193 GIFLNDEQPALNNWVQENyPDGEYGPGFN 221
                 57789999999999999877777777665 PP

  == domain 2  score: 200.1 bits;  conditional E-value: 2.5e-63
                 SEE-BTTEEEEETT--SEEE-..BTTBEEEEEET-TTTSEEEEEES--SS-----SS-EEEEEEEESS.-EEEEEEEEE------STT---EEEEEETT CS
     GH115_C   1 gFvesdgyvsieAehytrkks..segvkwevlpdlGrtlsgvtlfpvtaesqeaseapsLeYdfytfs.agevtvtlylsptlnlnperplryavslDd 96 
                 gF+esd  vsie eh+t++ s  s +v + v+p++Grtlsgvtl p ta+sq+++++p+LeY++y+f+ ++++++t+y++ptln+np+ pl+yavs+ d
  KKY22607.1 801 GFIESDSTVSIEPEHFTKNVSstSASVYYVVIPKYGRTLSGVTLLPATAPSQNTTSGPHLEYSIYFFTnTSNANITVYVGPTLNTNPSAPLKYAVSIGD 899
                 8*****************9986677889*********************************************************************** PP

                 S--EEEETTTT-....-HHHHHHHHHHS-EEEEEEEEE.-SEEEEEEEEE-STT-EEEEEEEESS-----SS---- CS
     GH115_C  97 eepqtvdlvpdeeagslpegWekavadnvrkrttevtvlkpGkhtLkiwavdpgvvleKividlgglkeSylGppe 172
                 e+pq+v+++p ++ g lp +W+ +v+d +  +tt ++v ++G+ tLk+wa++p++v++Kiv+dlgg++eSylGppe
  KKY22607.1 900 EKPQIVQPIPSTSLGTLPGTWTAQVSDAAASNTTMHNV-TAGATTLKLWALEPNLVFQKIVVDLGGVRESYLGPPE 974
                 **************************************.************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (978 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 7236.54
//
Query:       KKY22608.1  [L=247]
Description: hypothetical protein UCRPC4_g03225 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 1558.92
//
Query:       KKY22609.1  [L=217]
Description: putative ankyrin repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-19   69.7   0.9    1.1e-06   29.0   0.0    2.9  4  Ank_4     Ankyrin repeats (many copies)
    1.6e-16   60.6   0.3    5.9e-15   55.6   0.2    2.7  2  Ank_2     Ankyrin repeats (3 copies)
    1.5e-14   53.7   1.6    5.8e-09   36.0   0.1    2.7  3  Ank       Ankyrin repeat
    1.4e-13   49.6   0.7    1.7e-05   24.8   0.1    3.4  3  Ank_3     Ankyrin repeat
    1.5e-12   47.5   1.3    2.3e-07   30.9   0.0    2.7  3  Ank_5     Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.7e-08     6e-05      12      55 .]      36      81 ..      33      81 .. 0.86
   2 !   27.8   0.1   7.7e-10   2.8e-06      27      55 .]     103     130 ..      96     130 .. 0.95
   3 !   29.0   0.0   3.2e-10   1.1e-06       2      38 ..     111     146 ..     110     148 .. 0.91
   4 ?   -2.5   0.0       2.4   8.8e+03      16      22 ..     180     186 ..     177     192 .. 0.68

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.7e-08
       Ank_4 12 grlelvrlLlek..gadinaqdnrsGetalhiAakrgnveilklLl 55
                +++ ++++++++  ++d+   +++sG ++lh Aa +++veilk++l
  KKY22609.1 36 SHTSTLERIISTaiDIDPEDPASSSGCSLLHWAAANNHVEILKYFL 81
                78999999**994445577778899*******************98 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 7.7e-10
       Ank_4  27 inaqdnrsGetalhiAakrgnveilklLl 55 
                 +n+q n+ G+t+lh Aa++g+ e++klL+
  KKY22609.1 103 VNHQ-NSLGNTPLHWAALNGHMECVKLLV 130
                 79**.**********************96 PP

  == domain 3  score: 29.0 bits;  conditional E-value: 3.2e-10
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGeta 38 
                 +t+Lh+aa  g++e+v+lL++ gad+  q n+ G  a
  KKY22609.1 111 NTPLHWAALNGHMECVKLLVYAGADPSIQ-NAAGKDA 146
                 89***************************.9988665 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 2.4
       Ank_4  16 lvrlLle 22 
                 +v++Lle
  KKY22609.1 180 VVEWLLE 186
                 5677776 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.2   1.6e-18   5.9e-15      22      83 .]      51     140 ..      10     140 .. 0.78
   2 ?   -0.7   0.0      0.64   2.3e+03       8      21 ..     179     189 ..     171     202 .. 0.64

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 1.6e-18
       Ank_2  22 pn...k...ngktaLhyAakngnleivklLle..h....................adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 ++        g + Lh+Aa n+++ei+k++l+  +                    +++ g+tpLh+Aa +gh e+vklL++ gad+ +++
  KKY22609.1  51 IDpedPassSGCSLLHWAAANNHVEILKYFLQtiNataasseklikprvgglvnhQNSLGNTPLHWAALNGHMECVKLLVYAGADPSIQN 140
                 33334145699********************9551455555667677766664444467*********************99***99875 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.64
       Ank_2   8 gnlelvklLlegad 21 
                 g   +v++Lle+++
  KKY22609.1 179 G---VVEWLLENCE 189
                 3...6666663332 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.8e-06      0.01       2      29 ..      61      86 ..      60      90 .. 0.85
   2 !   36.0   0.1   1.6e-12   5.8e-09       2      31 ..     110     140 ..     109     141 .. 0.95
   3 ?   -3.1   0.0       3.7   1.3e+04      13      22 ..     179     185 ..     178     190 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.8e-06
                SBBHHHHHHHHTTHHHHHHHHTTTSTTC CS
         Ank  2 GnTPLHlAatngkkriiklLLhGAnlna 29
                G++ LH+Aa n++++i+k++L+   +na
  KKY22609.1 61 GCSLLHWAAANNHVEILKYFLQ--TINA 86
                99*******9**********94..3454 PP

  == domain 2  score: 36.0 bits;  conditional E-value: 1.6e-12
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 GnTPLH+Aa ng+ +++klL+  GA++ +++
  KKY22609.1 110 GNTPLHWAALNGHMECVKLLVyAGADPSIQN 140
                 9********************78****9998 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3.7
                 TTHHHHHHHH CS
         Ank  13 gkkriiklLL 22 
                 g   ++++LL
  KKY22609.1 179 G---VVEWLL 185
                 5...999999 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   1.2e-07   0.00043       2      24 ..      61      83 ..      60      89 .. 0.89
   2 !   24.8   0.1   4.7e-09   1.7e-05       2      30 ..     110     137 ..     109     138 .. 0.94
   3 ?    0.4   0.0      0.42   1.5e+03      17      25 ..     180     188 ..     173     191 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.2e-07
       Ank_3  2 GetpLhlAarsgnleivkfLlen 24
                G+++Lh+Aa ++++ei+k++l+ 
  KKY22609.1 61 GCSLLHWAAANNHVEILKYFLQT 83
                89*******************93 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 4.7e-09
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+tpLh+Aa++g+ e vk+L+   gad+ 
  KKY22609.1 110 GNTPLHWAALNGHMECVKLLVY-AGADPS 137
                 9*********************.8**997 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.42
       Ank_3  17 ivkfLlenk 25 
                 +v++Llen+
  KKY22609.1 180 VVEWLLENC 188
                 79*****64 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   7.7e-06     0.028       5      36 ..      52      81 ..      48      89 .. 0.83
   2 !   30.9   0.0   6.4e-11   2.3e-07       8      50 ..     102     145 ..      94     149 .. 0.90
   3 ?   -2.3   0.0       1.7     6e+03      31      37 ..     180     186 ..     178     191 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.7e-06
       Ank_5  5 gpadvnrldgggntpLhvAakygaadvvrlLl 36
                +p+d+  + g+  + Lh+Aa +++ ++++++l
  KKY22609.1 52 DPEDPASSSGC--SLLHWAAANNHVEILKYFL 81
                57777777788..9*****************9 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 6.4e-11
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG.l 50 
                  vn+++  gntpLh+Aa +g+ ++v+lL+  gad+ ++++ G +
  KKY22609.1 102 LVNHQNSLGNTPLHWAALNGHMECVKLLVYAGADPSIQNAAGkD 145
                 699************************************99955 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.7
       Ank_5  31 vvrlLla 37 
                 vv++Ll+
  KKY22609.1 180 VVEWLLE 186
                 899**94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1605.61
//
Query:       KKY22610.1  [L=397]
Description: putative peptidase a1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00015   21.4   0.1    0.00018   21.1   0.1    1.2  1  Asp       Eukaryotic aspartyl protease


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1     1e-08   0.00018     124     314 ..      85     290 ..      18     291 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1e-08
                 CHHHHHHHTTSSSSSEEEEEE-S.....TTSSEEEEEESSEEGGGEEEEEEEEEESS.........TSSTEEEEEEEEETTEEE...EEEEEEEEEEET CS
                 xxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx RF
         Asp 124 pvfdnlvsqglikepvfsvylnr.....eeeeggeivfGgvDeskykGsltyvpvts.........kgywqielesvtvggktv...lcssgcqailDt 205
                 +  ++l ++ +i+++ f++ +         +  g+i++Gg+D+sk++  + + +++            + qi+l++v  +++tv     +s+++a l t
  KKY22610.1  85 TLLQTLHDRDMISSKSFALDVGTgfdraGGALNGSITLGGYDSSKFSDPISTYQMQPnpsngnpfvVSVRQITLNDVGSSNSTVtllDDDSSFDASLTT 183
                 5678899999999999999988776445566779*********************98888766655555777777777778877765567888888999 PP

                 TCSSEEEEHHHHHHHHHHHTTEEEET..TCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSEEEESEEECCTSSSEEEEHHHHTTEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 206 GTsllalptsivekiakaigakkses..egeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesqCilglvseeegdlwiLGdvFlrsayvv 302
                     ++lp+ +++ +++ ++a ++++  +  +++  + ++++ +i+++    +++++ s+  l++ ++ + +  +   +++e+ + +LG  Fl s+y +
  KKY22610.1 184 DQYPITLPSAALSTFISTLNAFSDNTttNDDSLILPERFKGSMTITLS---SNFSITFSSEWLSNISNITPISSTP-CTSDESTTCLLGTSFLTSIYLL 278
                 9999*************9999765542367899999999999999998...7788888888888887554444444.5899999*************99 PP

                 EETTTTEEEEEE CS
                 xxxxxxxxxxxx RF
         Asp 303 fdldnnrvglAe 314
                   +++++  lA+
  KKY22610.1 279 SSYTASEFHLAP 290
                 888888877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2652.69
//
Query:       KKY22611.1  [L=217]
Description: putative alpha-methylacylracemase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-09   37.2   0.0    2.2e-09   36.9   0.0    1.1  1  CoA_transf_3  CoA-transferase family III


Domain annotation for each model (and alignments):
>> CoA_transf_3  CoA-transferase family III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   1.2e-13   2.2e-09     192     318 ..       9     138 ..       3     157 .. 0.77

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 1.2e-13
  CoA_transf_3 192 idvslleaalallapql..ley.latgevperqgnrdpaaapygvyrtkdg..wvaiaaatdkqwaalckalgrpelaedprfatnasrlenraeld 283
                   +d +++++a  l  ++   l++ +++g+  +  +  d + + y++y++kd   +va++a +++++++l++ l+ +  +  p   t +s  +    ++
    KKY22611.1   9 VDSNMVDGAGFLATFARlsLKTsVWDGKRGT--NLLDGGCPYYSCYECKDLgkYVAVGALEPQFFQQLLHGLDLDIKDVLPPGVTDRSDKTGWTFMK 103
                   6666666554333333301333466666666..6666788889*******779*******************999866677777777766777999* PP

  CoA_transf_3 284 aelaewlaertaaewlellaaagvpaapvntleev 318
                   +++++ ++e+t++ew+++++  + +++pv+++ e+
    KKY22611.1 104 KTFESKIKEKTRDEWEKIFEGVDACVTPVKEMVEL 138
                   ******************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1548.51
//
Query:       KKY22612.1  [L=757]
Description: putative glutamine-dependent nad(+) synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-44  150.7   0.0    6.7e-44  150.2   0.0    1.3  1  CN_hydrolase  Carbon-nitrogen hydrolase
    1.3e-23   83.4   0.0    4.9e-23   81.5   0.0    1.8  1  NAD_synthase  NAD synthase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.2   0.0   7.5e-48   6.7e-44       1     260 [.       6     282 ..       6     283 .. 0.97

  Alignments for each domain:
  == domain 1  score: 150.2 bits;  conditional E-value: 7.5e-48
                   EEEEEEBB-STTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTBSSSHHHHHHHHB....HSSSHHHHHHHHHHHHHTEEEEEEEEEEEC...CTT CS
  CN_hydrolase   1 rvAvvQlpqkaadleanlqklleliaeAarkgadLivlPElfitgykeeahfleaAe....aglgetlallaalarkngiavviglierel...tng 90 
                   ++A + l+q+a d+e+n +++ e i++A+  ga L v PEl itgy + +hfle ++    +   e+la++ + + +++i+v +g++ r +   +n+
    KKY22612.1   6 TIATCSLNQWALDFEGNAARIIESIKKAKAVGATLRVGPELEITGYGCLDHFLEGDIflhsW---EMLARIIQDPGCQDILVDVGMPVRHRnvrYNC 99 
                   5899***********************9999***********************999*6666...********************88886678**** PP

                   EEEEEEEEEEEETTSEE...EEEEE-SS--EECTTSCECCGHHTSCS.............-SSS-EEEETTEEEEEEEGGGGGSHHHHHH.HHHTT- CS
  CN_hydrolase  91 klqayntavlldldgkl...vgkyrKlhLfpgeprpptaverelfep.............gdgipvfdtpvgkiGaaiCyeigfpellra.lalkga 170
                   ++ ++n+ +ll + +++    g+yr+++ f + +++++ ve +++e+             gd  +v++t+ +++Ga+ C+e + p++ ++ ++l+g+
    KKY22612.1 100 RVLFFNKKILLIRPKMWlanDGNYREMRYF-TPWQRAREVEDYYLESvvgnitgqykvpfGD--AVISTRDTCVGAETCEELFTPNSPHIpMGLNGV 193
                   ****************************99.89*****************************..********************************* PP

                   SEEEEBH.GCCCTCHHHHHHHHHHHHHHHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEECCSSSTE...EEEEEEEHHHHHHHH CS
  CN_hydrolase 171 eilvnlserapvpksmgppqwellgraralengcfviaanqvggyeqlilwpvghSaiidpdGrilaglgeeeeg...vliaeidladvratr 260
                   ei +n s++++++ ++ +  ++l+ +a  + +g++ ++anq g+  ++++ ++ ++a+i  +G+++a+ ++++ +   v++a++d +dvr++r
    KKY22612.1 194 EIFTN-SSGSHHELRKLQTRLNLIVEATRQLGGIY-LYANQQGC--DGDRLYYDGCAMIIINGQVVAQGSQFSLNdveVVTATVDIEDVRSFR 282
                   *****.889**************************.********..****************************9999***********9976 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.0   5.4e-27   4.9e-23       8     198 ..     340     605 ..     337     614 .. 0.89

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 5.4e-27
                   HHHHHHHHCTT.SEEEEEE-SSHHHHHHHHHHHHHH.......................................TCGEEEEEE--SSSTTHHHHHH CS
  NAD_synthase   8 flkeyvkkaga.kgvvlGlSGGvDSslvaalavkal.......................................gkenvlalllPssvsseedved 64 
                   +l +y++++g   g+ + lSGG+DS  ++++  ++                                         +  +++  + +++ss+e    
    KKY22612.1 340 WLWDYLRRCGGaAGFFIPLSGGIDSCATSVIVFSMCrlvyqavtedhnaqvitdcrrlcgepsdslwlpsspqeiCHRLFHTCFMGTTNSSKETRAR 436
                   6778999886449************988776665555667999***************************9999888899***************** PP

                   HHHHHHHHTSEEEE---HHHHHHHHHHHHHHH..............-HHHHHHHHHHHHHHHHHHHHHHH..........TEEEB---BHHHHTTT- CS
  NAD_synthase  65 alalaenlgievktidikpivrafeqelkeak..............edlakgNlkaRiRmailyaiankl..........nllvlgTgnksElvvGy 137
                   a+ala ++g   + ++i+ +v+a+++ ++  +              e+la +N++aRiRm++ y +a+ l          +llvlg  n  E + Gy
    KKY22612.1 437 AKALATDIGAYHTDLNIDTVVSALTSMFSAVTsftprfklhggspsENLALQNIQARIRMVVAYLFAQLLptvrkrpgggGLLVLGSANVDESLRGY 533
                   *************************9777766677888999999999********************8643233333333689************** PP

                   S-TTTTT--SBETTTTS-HHHHHHHHHHTT......--HHHHCS--B--S.....STT-BHHHHHSS-HHHH CS
  NAD_synthase 138 fTkyGDgaadlapiaellKtevkeLakeln......vPervlkkpPsAdL.....kpgqtDeeeLgikYdel 198
                    Tky   +ad++pi+++ Kt+ k   ++        + +  ++  P+A+L        q+De+++g++Ydel
    KKY22612.1 534 LTKYDCSSADINPIGGISKTDLKSFIAWAQtafdlpILKDFIEAVPTAELepitaNYVQSDEADMGMTYDEL 605
                   *************************9998888997788************88877678************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 5132.62
//
Query:       KKY22613.1  [L=1665]
Description: putative protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-90  302.2   0.0    1.2e-89  301.3   0.0    1.4  1  Questin_oxidase  Questin oxidase-like
    5.6e-70  235.7   0.0    9.3e-70  235.0   0.0    1.3  1  Pkinase          Protein kinase domain
    7.3e-32  110.7   0.0    1.4e-31  109.8   0.0    1.4  1  Pkinase_Tyr      Protein tyrosine kinase
      3e-16   59.7   0.0    8.8e-16   58.1   0.0    1.8  1  NUDIX            NUDIX domain
    2.1e-11   44.4   0.0      5e-11   43.2   0.0    1.7  1  NUDIX-like       NADH pyrophosphatase-like rudimentary NUDIX 
    6.2e-07   29.0   1.0    1.3e-06   28.0   1.0    1.5  1  zf-NADH-PPase    NADH pyrophosphatase zinc ribbon domain
     0.0017   17.7   0.4      0.004   16.6   0.4    1.5  1  Kdo              Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.037   13.3   0.1       0.16   11.3   0.0    2.1  2  Kinase-like      Kinase-like
      0.067   12.1   0.0       0.38    9.6   0.0    2.0  1  Haspin_kinase    Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Questin_oxidase  Questin oxidase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.3   0.0   5.8e-93   1.2e-89       3     340 .]    1280    1609 ..    1279    1609 .. 0.93

  Alignments for each domain:
  == domain 1  score: 301.3 bits;  conditional E-value: 5.8e-93
  Questin_oxidase    3 NHlpHhllAlyalGAsaeqlqaaYeenasyqr.paepsp....ekiteenwrdhLgdeeyyrayldFFedeleekgwkevleeylfs.nega 88  
                       NH+pHh+l+lyalGA+++++q+ Y+ na+yqr p ++++    + +++++ +++Lg+++yy+++l+FF++e+eekg+  +++++lf+ +e a
       KKY22613.1 1280 NHIPHHILTLYALGATPDEIQRGYDVNAEYQRsPGKEKKrvldDLHDRKKITQYLGKQQYYASFLHFFQSEIEEKGVGGTIQDHLFAgDEVA 1371
                       ****************************999757777669999999****************************************988889 PP

  Questin_oxidase   89 eellsrlfggllHPlIhlGyglefgqpalvaegLAqaavhydsdpse.lls....aeaassraessegsslleilerilkderldaaarpgn 175 
                       +++l  +f+g+lHP+Ih G+g+ef+qpa+vaegL+++av++ s++++ +++       +s ++++++++sl++il +i+ +++l + a++  
       KKY22613.1 1372 NRMLGQMFAGFLHPIIHAGFGIEFEQPAIVAEGLSMCAVSS-SWLNKyFEAiglhI-SSSTSSPTPSSKSLFDILTEIQSNADLTTCAKW-- 1459
                       99***************************************.88887788866331.222366889999******************999.. PP

  Questin_oxidase  176 edddkirdgvlkraadeileyanawkvseeedkeeleekleeliwaatllyaaaglkkepkkpkyDFflmHlvTsslalrsllallpsklsp 267 
                        d++ki+dgvl+ra++ +++++++++v   +++ +l+ +++e+  ++++++ aa   +++k+ k+DFf+mH+++ss+++ s+l +  ++l++
       KKY22613.1 1460 SDSNKILDGVLARASQPMVQLVSQFRV---TKPPDLTLQTAEMTSFSAYITCAAL--NPTKQIKFDFFFMHCINSSIFFWSFLDQ--PWLTN 1544
                       789************************...44568*****************965..789*************************..***** PP

  Questin_oxidase  268 eskarllraywrlvllvyvargrpeldldsikeyksaseaelkkgndwktviqrsasaikhdDeHviKlvral 340 
                       ++k  ll+++  ++l++yv+rg+p+l l++i++y++      k + dw+++++r ++   +dD+H+ K++ral
       KKY22613.1 1545 AQKCKLLEMKGWVDLCMYVSRGSPKLYLEEITNYEP------KVPGDWTSLFRRINK--FEDDGHASKFIRAL 1609
                       *********************************887......4689*******9884..5***********97 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.0   0.0   4.7e-73   9.3e-70       5     264 .]     918    1200 ..     915    1200 .. 0.95

  Alignments for each domain:
  == domain 1  score: 235.0 bits;  conditional E-value: 4.7e-73
                  EEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH.HHSS--HHHH CS
     Pkinase    5 eklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle.rkgslseeea 100 
                  + +G G++GkV+ka++  t+++vA+Kki+ e +++    +++rEi++l++l+h+++v l ev+ ek+e ++v+ey+ ++ l+ l++    +l++++ 
  KKY22613.1  918 SVVGAGTYGKVFKAIHVFTKEKVALKKIRMEGERDGFPITAVREIRLLQHLRHEHVVSLQEVMVEKNECFMVFEYLAHD-LTGLINhPTFTLTNAHK 1013
                  679**************************************************************************77.99999956667****** PP

                  HHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHSS CS
     Pkinase  101 kkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk..ltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltgk 194 
                  k++akq++egl++lH++g++HrD+K +NiLi+++g+lK +DFGla+ +++s +  +t++v+t +Y++PE+l +e++y+++vD+Ws++++++e++t+k
  KKY22613.1 1014 KHLAKQMFEGLDFLHRRGVLHRDIKAANILISNTGQLKYADFGLARFYSKSRQldYTNRVITIWYRPPELLlGETQYGPAVDIWSAACVFVEMFTKK 1110
                  **************************************************99999****************9************************* PP

                  -STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS.........................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase  195 ppfsgekgkekvekeldqlekilkilg.etkeklpeasei.........................seeakdllkkllkkdpkkRltaeellqhpyl 264 
                   +f+ge g      e+ ql k++ ilg +t+ ++p+  e+                         s+ea++l+++++ +dp kR+ a++ll+hpy+
  KKY22613.1 1111 AVFPGEGG------EISQLDKMYSILGtPTRSEWPNIVEMpwfellrpterrrrrleedvyqslfSPEAIKLINSIFIYDPAKRPDASQLLAHPYF 1200
                  ****5554......5677777999999877888888888899*****************************************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.0   6.8e-35   1.4e-31       5     203 ..     918    1111 ..     916    1197 .. 0.83

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 6.8e-35
                   EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr    5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekek 99  
                   + +G+G++GkV+++        +++kVa+K+++ e +++      ++e++++++l+h+++v+l  v++++++ ++v+ey+++ dL   +++  + +
   KKY22613.1  918 SVVGAGTYGKVFKAIHV----FTKEKVALKKIRMEGERDGfPITAVREIRLLQHLRHEHVVSLQEVMVEKNECFMVFEYLAH-DLTGLINHP-TFT 1007
                   679***********999....8999*******87666665478999**********************************98.899999888.9** PP

                   SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHH.HSEEEHHHHHHHHHHH CS
  Pkinase_Tyr  100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslk.ekkftsksDvWsfGvl 194 
                   lt  ++ ++a q+ +G+++L+++ ++Hrd+ a N+L+s++ + k +DfGLar   +++++ + +++ + + + +pE l  e+++  + D+Ws + +
   KKY22613.1 1008 LTNAHKKHLAKQMFEGLDFLHRRGVLHRDIKAANILISNTGQLKYADFGLARFY-SKSRQLDYTNRVITIWYRPPELLLgETQYGPAVDIWSAACV 1102
                   ****************************************************87.888889999999***99****9761566************* PP

                   HHHHHTTSS CS
  Pkinase_Tyr  195 lwEiftlge 203 
                     E+ft+ +
   KKY22613.1 1103 FVEMFTKKA 1111
                   *****9644 PP

>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   4.4e-19   8.8e-16       5     118 ..     265     374 ..     261     383 .. 0.78

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 4.4e-19
                 EEEEEEEETTSE.EEEEEESSSSTTTE.ESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE..EEECSGCSST CS
       NUDIX   5 avgvvllnekge.vLlvrrskkpfpgW.elPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfl..eevegelepn 99 
                 +++v +l ++g  +Ll r + + +p+W ++ +G++epgE++e+A+rRE++EE G++   + +++      + + py+ + +i  +     e+++ ++++
  KKY22613.1 265 TIIVAVLSKDGSrILLGRNR-RFPPNWySTLAGFIEPGESVEDAVRREVWEESGVILSRVVIHS------TQPWPYPANLMIGCIAQvaSEEDEAIKLD 356
                 45566777777669999988.89999956*************************9666666666......55566665555556666668888888888 PP

                 STTTEEEEEEEEHHHHHHH CS
       NUDIX 100 denevsevrwvpleellke 118
                  ++e++++ w++l+e+ +e
  KKY22613.1 357 YDPELEDANWFSLAEV-RE 374
                 ***************9.43 PP

>> NUDIX-like  NADH pyrophosphatase-like rudimentary NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   2.5e-14     5e-11       1     102 []      57     192 ..      57     192 .. 0.83

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 2.5e-14
  NUDIX-like   1 sarfllfrrgrllves....................eeseeelllpadssaalvgkdseelvfLGldeg...........gapvfAvdvsareee.... 64 
                 s+rf+lf+++++l+++                    ++++e+++++ + s    +++ ++lvfLGl+e+           gap fA+dv+++++     
  KKY22613.1  57 STRFMLFKNLSPLCKTptemayasytdvealiggdpYSKSEQEMIKEYNS----KNSTPQLVFLGLEEQvkdgfqyknflGAPHFALDVTPKSAYekev 151
                 69**************8888888776666666666666666666666666....788*************************************99999 PP

  NUDIX-like  65 ...ikeaeeeggafvelRavmlals.aedaalaaqAralldW 102
                    + + ee+g+++ e  ++m +++ + +aa +a+AralldW
  KKY22613.1 152 nelLAKMEERGYKPLEGMRAM-SFPaDVEAASYAMARALLDW 192
                 999666667777777765556.5553789************* PP

>> zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   1.0   6.3e-10   1.3e-06       1      27 [.     194     220 ..     194     221 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 6.3e-10
  zf-NADH-PPase   1 rthrFCgrCGaptepaeggwarvCpaC 27 
                    +++++Cg CG+pt  + gg++rvCp +
     KKY22613.1 194 ARNPYCGGCGQPTLSVNGGTKRVCPPT 220
                    5899********************976 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.4     2e-06     0.004      57     155 ..     957    1048 ..     940    1065 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2e-06
         Kdo   57 ravrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwae..laeelkrallkavgrliaklhragvnHadlyaknill 151 
                  +avrE+rll+ L+++ v  ++ v+ + +        +++ e l++  dL+ l+++  +  l ++ k++l k+       lhr+gv H+d+ a nil+
  KKY22613.1  957 TAVREIRLLQHLRHEHVVSLQEVMVEKN------ECFMVFEYLAH--DLTGLINH-PTftLTNAHKKHLAKQMFEGLDFLHRRGVLHRDIKAANILI 1044
                  89***************99999987654......46788888864..78887774.44467799999999999999********************* PP

         Kdo  152 qqee 155 
                   +++
  KKY22613.1 1045 SNTG 1048
                  9987 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.6   5.1e+03     111     132 ..     546     567 ..     485     574 .. 0.76
   2 ?   11.3   0.0   7.8e-05      0.16     139     220 ..    1006    1091 ..     956    1102 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.6
  Kinase-like 111 vnallllpaasvdleilnkvlq 132
                  v +ll+lpa +  l+++ + l+
   KKY22613.1 546 VALLLILPAEQKQLQVIDHQLK 567
                  5689999999999999988876 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 7.8e-05
  Kinase-like  139 kkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve....kgfaPpEllgsrggyt 220 
                   + l ++ ++ l  q+      L+ +g++h ++++ n+l  + g+l+  +f+  + + ++ +l  ++      + PpEll   ++y+
   KKY22613.1 1006 FTLTNAHKKHLAKQMFEGLDFLHRRGVLHRDIKAANILISNTGQLKYADFGLARFYSKSRQLDYTNrvitIWYRPPELLLGETQYG 1091
                   556666666677777777788*****************************977777777777555534456799**9987666665 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00019      0.38     230     267 ..    1034    1071 ..     903    1073 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00019
  Haspin_kinase  230 HRdLhldniLvdknlnvtlidlklsRlessegkvlytr 267 
                     HRd++  niL+ ++++    d+ l+R+ s++ ++ yt+
     KKY22613.1 1034 HRDIKAANILISNTGQLKYADFGLARFYSKSRQLDYTN 1071
                     ****************************9999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1268  (0.0707234); expected 358.6 (0.02)
Passed bias filter:                      663  (0.0369792); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.27u 0.37s 00:00:01.64 Elapsed: 00:00:00.56
# Mc/sec: 8948.70
//
Query:       KKY22614.1  [L=436]
Description: putative chromatin assembly factor 1 subunit c [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-28   99.3   0.9    8.2e-28   96.5   0.6    2.6  3  CAF1C_H4-bd  Histone-binding protein RBBP4 or subunit C of CA
    6.9e-26   90.0   5.9    4.3e-05   24.2   0.1    6.5  6  WD40         WD domain, G-beta repeat
    7.4e-09   35.8   0.2     0.0089   16.3   0.0    4.4  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    0.00064   19.6   0.2       0.15   12.0   0.0    3.5  4  eIF2A        Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
      0.055   13.5   0.0         12    6.0   0.0    2.5  2  DUF3751      Phage tail-collar fibre protein


Domain annotation for each model (and alignments):
>> CAF1C_H4-bd  Histone-binding protein RBBP4 or subunit C of CAF1 complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.6   2.3e-31   8.2e-28       1      67 []      26      96 ..      26      96 .. 0.97
   2 ?   -1.4   0.0      0.82   2.9e+03      41      41 ..     284     284 ..     245     320 .. 0.49
   3 ?   -1.5   0.0       0.9   3.2e+03      48      63 ..     405     417 ..     375     419 .. 0.74

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 2.3e-31
                 HHHHHHHHHHHHHEEEEEEEE-SS--S-EEE-S-B--...-.EEEEEEEE----TTSS-EEEEEEEEEEEX CS
  CAF1C_H4-bd  1 eeylewkknapfLYdmlhshslewPsLsfdwlPdtvs...s.lskqrllvGtqtsgkeqnylyvakvslpk 67
                 eey+ wkknapfLYdm++s++l+wP+L+ +wlPd++s   + +s++rll+Gt+tsg+ +nyl++a v+lp+
   KKY22614.1 26 EEYKTWKKNAPFLYDMILSTALDWPTLTTQWLPDKQSlldKpYSTHRLLIGTHTSGDADNYLQIAHVQLPN 96
                 7*********************************87789999**************************996 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.82
                  E CS
  CAF1C_H4-bd  41 k 41 
                  +
   KKY22614.1 284 Q 284
                  1 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.9
                  ---TTSS-EEEEEEEE CS
  CAF1C_H4-bd  48 tqtsgkeqnylyvakv 63 
                  +     e+n ++++kv
   KKY22614.1 405 SA---AEDNLIQIWKV 417
                  33...56999999998 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.031   1.1e+02       9      38 .]     136     167 ..     128     167 .. 0.78
   2 !   17.2   0.0   1.9e-06     0.007       3      38 .]     181     218 ..     179     218 .. 0.80
   3 !    7.2   0.1    0.0028        10       2      34 ..     230     264 ..     229     268 .. 0.75
   4 !   14.1   0.0   1.8e-05     0.065      10      38 .]     285     315 ..     280     315 .. 0.86
   5 !   24.2   0.1   1.2e-08   4.3e-05       2      38 .]     321     359 ..     320     359 .. 0.90
   6 !   20.1   0.2   2.3e-07   0.00081       7      38 .]     383     416 ..     378     416 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.031
                 SS.SSEEEEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasG.sdDgtvriWd 38 
                  H + v+  +++p ++ +++  + Dg v+++d
  KKY22614.1 136 NHkGEVNKARYQPQNPNIIATmCTDGRVMVFD 167
                 474449999999999999875435******98 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.9e-06
                 EEEEEESS..SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   3 clrtltGH..ssvtslafspdgaw.lasGsdDgtvriWd 38 
                 ++ +l+GH   +  +l++sp+ +  l++G +D+tvr+Wd
  KKY22614.1 181 PQIELDGHtqEGF-GLSWSPHETGkLVTGAEDQTVRLWD 218
                 7788999964335.89888888887789**********9 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0028
                 EEEEEEESSSS.EEEEEEETTSSEEEEE..ETTSEE CS
        WD40   2 qclrtltGHss.vtslafspdgawlasG..sdDgtv 34 
                 ++ +t+t H+s v++++++p ++ l+ G  sdD t+
  KKY22614.1 230 KPKKTYTHHTSiVNDVQYHPLHSALI-GtvSDDLTL 264
                 67899*9995548***9999888887.544777665 PP

  == domain 4  score: 14.1 bits;  conditional E-value: 1.8e-05
                 S.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS
        WD40  10 H.ssvtslafspdgawl.asGsdDgtvriWd 38 
                 H + +++++f+p +  l a+Gs D+t+ i+d
  KKY22614.1 285 HrDAINAISFHPRQEILlATGSADKTIGIFD 315
                 8777************6369*******9987 PP

  == domain 5  score: 24.2 bits;  conditional E-value: 1.2e-08
                 EEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 
                 ++++ l+GH  svtsl ++p  + ++ s+s+D+ + +Wd
  KKY22614.1 321 NKVHALEGHnESVTSLEWHPTEDSILgSASYDRRIIFWD 359
                 67999****777*************966689*******9 PP

  == domain 6  score: 20.1 bits;  conditional E-value: 2.3e-07
                 EESS.SSEEEEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawlasG.sdDgtvriWd 38 
                   GH + +++++++++ +w++++  +D+ + iW+
  KKY22614.1 383 HGGHtNRISDFSWNKNDPWVVCSaAEDNLIQIWK 416
                 469*888************9855368*******6 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0052        19      34      71 ..     134     172 ..     126     184 .. 0.81
   2 !    7.9   0.0    0.0011       3.8       8      69 ..     152     221 ..     145     237 .. 0.83
   3 !   16.3   0.0   2.5e-06    0.0089      28      90 ..     276     339 ..     251     341 .. 0.79
   4 ?    4.7   0.0      0.01        36      36      70 ..     385     420 ..     378     430 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0052
  ANAPC4_WD40  34 edkedsevrsLaWkpdg.klLavaysdgevrlldaesgk 71 
                  + ++++ev++ +++p++ +++a  + dg+v ++d  +  
   KKY22614.1 134 KINHKGEVNKARYQPQNpNIIATMCTDGRVMVFDRTKHS 172
                  458999********965499************9987765 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0011
  ANAPC4_WD40   8 DLiAlatedgellvf.Rlngqrvwtl......eedkedsevrsLaWkpdgk.lLavaysdgevrlldaes 69 
                  ++iA + +dg+++vf R++   v t+      e d++ +e  +L+W+p ++  L+ + +d +vrl d+ +
   KKY22614.1 152 NIIATMCTDGRVMVFdRTKHSSVPTGivnpqiELDGHTQEGFGLSWSPHETgKLVTGAEDQTVRLWDITE 221
                  689999999999997699999999999998777778888888*****998636999*********99875 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 2.5e-06
  ANAPC4_WD40  28 rvwtleedkedsevrsLaWkpdgk.lLavaysdgevrlldaesgk.vvhslsvksekavtclgWg 90 
                  r    +++++   +++++++p  + lLa + +d ++ ++d+ + k  vh+l+ ++e +vt+l+W 
   KKY22614.1 276 RAAASTANQHRDAINAISFHPRQEiLLATGSADKTIGIFDIRNLKnKVHALEGHNE-SVTSLEWH 339
                  5555567889999*******9877257999***********996526888888888.5******6 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.01
  ANAPC4_WD40  36 kedsevrsLaWkpdgk.lLavaysdgevrlldaesg 70 
                  ++ +++++++W++++  + + a +d+ +++ ++ ++
   KKY22614.1 385 GHTNRISDFSWNKNDPwVVCSAAEDNLIQIWKVADA 420
                  678899*****9888637788999******998775 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       0.1   3.7e+02      79     136 ..     116     172 ..      86     180 .. 0.73
   2 ?   -0.7   0.0      0.31   1.1e+03      66     109 ..     196     248 ..     182     282 .. 0.66
   3 !   12.0   0.0   4.1e-05      0.15      98     164 ..     284     351 ..     264     356 .. 0.80
   4 ?    1.4   0.0     0.069   2.5e+02      60     178 ..     388     417 ..     382     431 .. 0.59

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.1
                 SSSSCEEEEEECSCEEEEEEE.EES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTE CS
       eIF2A  79 Gkmpakvslfdlkvkviskle.eqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkk 136
                 G  p++   fd+k +++ k++ + + N   ++p++  ++      + G++ ++d++k +
  KKY22614.1 116 GGGPSRKPEFDVKFHIVQKINhKGEVNKARYQPQNPNIIATM--CTDGRVMVFDRTKHS 172
                 55566666699999999999725689*******998776543..345777777777655 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.31
                 EE-TTSS-EEEEESSSSCEEEEEECS..........CEEEEEEEEES--EEEE- CS
       eIF2A  66 aWspkskefaviyGkmpakvslfdlk..........vkviskleeqkrNtiffs 109
                 +Wsp+++   ++ G  +++v l+d +           k++++ +++  N + ++
  KKY22614.1 196 SWSPHETG-KLVTGAEDQTVRLWDITefqrsnkllkPKKTYTHHTSIVNDVQYH 248
                 68877665.456888899999988844434334422333333334444555555 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 4.1e-05
                 EEEES--EEEE-TTSSEEEEE-TTSSS.-EEEEEETTTTEEEEEEE-TT--EEEE-TTSSEEEEEE-T CS
       eIF2A  98 leeqkrNtiffspkgklvllaGfgnla.GeleiwdvkkkkkiakaeaanatlvewspdgryvlTatta 164
                  ++++ N+i f+p+++++l  G  +   G  +i + k+k +  + +++  t++ew+p+ + +l + ++
  KKY22614.1 284 QHRDAINAISFHPRQEILLATGSADKTiGIFDIRNLKNKVHALEGHNESVTSLEWHPTEDSILGSASY 351
                 456778*********9999888766533888888888877788888889999******9999887766 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.069
                 S.EEEEEE-TTSS-EEEEESSSSCEEEEEECSCEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--EEEE-TTSSEE CS
       eIF2A  60 gpihdvaWspkskefaviyGkmpakvslfdlkvkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanatlvewspdgryv 158
                 + i d++W+++ +  +v+    ++ +++++                                                                     
  KKY22614.1 388 NRISDFSWNKN-DPWVVCSAAEDNLIQIWK--------------------------------------------------------------------- 416
                 44666666654.344555555555555544..................................................................... PP

                 EEEE-TTT-SSS-EEEEEET CS
       eIF2A 159 lTattaprlrvdngfkiwsy 178
                                    +
  KKY22614.1 417 -------------------V 417
                 ...................3 PP

>> DUF3751  Phage tail-collar fibre protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0033        12      48      74 ..     128     155 ..     112     159 .. 0.73
   2 ?    4.7   0.0    0.0083        30      44      90 ..     273     318 ..     261     322 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0033
     DUF3751  48 qtalvne.vwraavnqlgvdpknpnqvv 74 
                 +  +v++  ++++vn+ +++p+npn ++
  KKY22614.1 128 KFHIVQKiNHKGEVNKARYQPQNPNIIA 155
                 445666679****************987 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0083
     DUF3751  44 pdesqtalvnevwraavnqlgvdpknpnqvvaelvipeevGgFtire 90 
                 ++++++a  ++++r a+n+++ +p++ + + a    ++++G F+ir 
  KKY22614.1 273 ETNRAAASTANQHRDAINAISFHPRQ-EILLATGSADKTIGIFDIRN 318
                 57888889999***********8775.56777788899999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2778.19
//
Query:       KKY22615.1  [L=1401]
Description: putative exonuclease kem1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-98  327.6   0.0      7e-98  326.9   0.0    1.3  1  XRN_N       XRN 5'-3' exonuclease N-terminus
    4.7e-98  329.0   6.7    8.8e-98  328.1   6.7    1.4  1  XRN_M       Xrn1 helical domain
    7.1e-73  244.5   0.2    1.4e-72  243.5   0.2    1.6  1  XRN1_D1     Exoribonuclease Xrn1 D1 domain
    2.6e-32  110.9   0.0    7.3e-32  109.4   0.0    1.9  1  XRN1_D2_D3  Exoribonuclease Xrn1 D2/D3 domain
    1.8e-22   79.2   0.2    4.7e-22   77.9   0.2    1.8  1  SH3_12      Xrn1 SH3-like domain
    2.9e-06   27.3   0.1    7.4e-06   26.0   0.1    1.7  1  Xrn1_D3     Exoribonuclease 1 Domain-3
  ------ inclusion threshold ------
      0.039   13.2   0.2        8.1    5.6   0.0    2.2  2  TIMELESS    Timeless protein


Domain annotation for each model (and alignments):
>> XRN_N  XRN 5'-3' exonuclease N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.9   0.0  2.7e-101     7e-98       1     242 []       1     227 [.       1     227 [. 0.93

  Alignments for each domain:
  == domain 1  score: 326.9 bits;  conditional E-value: 2.7e-101
                 XXX-HHHHHHHHHSGGGEEE------SSSS.-EEEEEEETHHHHHHHHS-SSS-......--SSHHHHHHHHHHHHHHHHHHH-EEEEEEEE------H CS
       XRN_N   1 mGvpklfrwlserypkivkevieeeeeeek.efdnLYlDmNgiihkcshkedkeekelskkpkteeeifkkifkyidrlvkivrprkllylavDGvaPr 98 
                 mGvpk+frw+seryp +++++i e++     efd+LYlDmNgiih+c+hk    +++  + ++te+++f +if+yi++l+ +++prkl+++a+DGvaPr
  KKY22615.1   1 MGVPKFFRWMSERYP-AISQLIAENR---IpEFDCLYLDMNGIIHNCTHK----DSDSPTFRMTEDKMFITIFNYIEHLFGKIKPRKLFFMAIDGVAPR 91 
                 9**************.7777774444...33******************9....34567889************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-BB--------GGGSSTTSHHHHHHHHHHHHHHHHHHHH-GGGGG-EEEEE-TTS-S-HHHHHH CS
       XRN_N  99 aKmnqqRsRRfrsakeakeekeekeelkeelekeekeeeeeeekfdsnvitpGtefmeklsealkafikkklkedpawknlkvilsdaevpGEGEhKim 197
                 aKmnqqR+RRfr+a +a++++e++ +        e +e ++e+ fdsn+itpGtefm+kl+++lk+fi+kk++ed+ w+ ++v+ls++evpGEGEhKim
  KKY22615.1  92 AKMNQQRARRFRTALDAEKAREKAIK--------EGQEMPTEDPFDSNCITPGTEFMAKLTQQLKYFISKKVSEDTDWQGVEVVLSGHEVPGEGEHKIM 182
                 ******************99885444........3444578899******************************************************* PP

                 HHHHHHHTSTTS-TT-EEEEE---THHHHHHHHHT-SSEEEEEE- CS
       XRN_N 198 efirkqrskpeydpntrhviyglDaDLillsLathepniliLree 242
                 e+ir+ +++p+ydpn rh++yglDaDLi+l+L++h+p++++Lree
  KKY22615.1 183 EYIRQAKAQPNYDPNVRHCLYGLDADLIMLGLLSHDPHFCLLREE 227
                 *******************************************96 PP

>> XRN_M  Xrn1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.1   6.7  3.4e-101   8.8e-98       2     337 ..     275     670 ..     274     684 .. 0.84

  Alignments for each domain:
  == domain 1  score: 328.1 bits;  conditional E-value: 3.4e-101
       XRN_M   2 fdleriiDDfvFlcFFvGNDFLPhlPsLeiregaidlllkvYkkelkklggyltdngevkldrveklvslvgkveekifrkrkeredrkekklakeeea 100
                 +dler+iDDf+ ++FFvGNDFLP lP L+i+ega+ l+++ Yk+ l++lggy+ + g+++ldr   l++ + +ve + f+   +  +  ++k+++++e+
  KKY22615.1 275 YDLERVIDDFILMAFFVGNDFLPNLPNLHINEGALALMFQKYKEILPRLGGYINEHGYINLDRLAILLDALSEVEYRFFEAEYSDAKWIKSKQNQDNEE 373
                 8******************************************************************************98766655555554444433 PP

       XRN_M 101 skedaaneeaavaeeklseskvak..................................................................saeaeaeae 133
                  +    + +a v  ++l+++   +                                                                  +     + +
  KKY22615.1 374 IE--PRKGKAVVRVTPLQKA---LfrdikkfvispaskeskqpfdcattlpardrkfvqqlavdlnlewktvqtddgerfirlefpssqdQ--DDDSDD 465
                 33..3333333333333222...222355699******************************************************98542..333333 PP

       XRN_M 134 aeaeaeakae.kekrekaekeleeseeeeeeeDkvrLgeeGykeRYYkekfevsseeieqrrevvqkYveGLcWvlrYYyqGvaSWkWfyPyhyaPFaS 231
                 +e + +  ++ k+ ++   +++++++++ e + +       +k++YY+ekfe   ++ e  r + ++Yv+GL Wvl YYy+GvaSW W+y yhy+P +S
  KKY22615.1 466 EEGQLALMRVlKRYENAKVEDVSAEANQAELQKHYDQKFVQWKDKYYTEKFEWGLNDEEPLRGLTENYVQGLQWVLFYYYRGVASWPWYYKYHYSPMIS 564
                 33222222220222223333333344444444444455678********************************************************** PP

       XRN_M 232 DlknladlkikFekgspfkpleqLmavlPaaskkalPkayqkLmtdpdSpiidlypedfeidlnGkrvaWqgvaklPfidekrLlealakleeeLteeE 330
                 D+k+  + +++F++g+pf+p++qLm+vlP +skk +P+ay++Lm++pdSpiid+yp+dfe+d+nGk++ W +v+k+Pfi+e+rLl+a+++ ++ Lt++E
  KKY22615.1 565 DVKKGLKANMEFKLGQPFRPFQQLMGVLPDRSKKIVPSAYHDLMSSPDSPIIDFYPRDFELDMNGKKMDWEAVIKIPFINEERLLNAMKTKDRLLTSDE 663
                 *************************************************************************************************** PP

       XRN_M 331 kkRNtrk 337
                 k RN  +
  KKY22615.1 664 KSRNDFG 670
                 ****865 PP

>> XRN1_D1  Exoribonuclease Xrn1 D1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.5   0.2   5.6e-76   1.4e-72       1     192 []     719     907 ..     719     907 .. 0.99

  Alignments for each domain:
  == domain 1  score: 243.5 bits;  conditional E-value: 5.6e-76
                 SS-TT---GGGS-TTS--STTS-EEEEEE-----SSSS--SS-EEEEEE--------HHHHHHHHBTSEEEESGGG-EEEEEEEEE-SS-EEEEE-..S CS
     XRN1_D1   1 GLlegaklgaealaGFPsLktlpftaeLefhgvnvFqqeSrneSmvvtiedkeenlkleelakeklgkrvfvgyPfLrEakvvavsdelfkyekellee 99 
                 GL++g+k+ga+alaGFPsLktl++ ++L+fhgvnvFq+eSrneSmvvt+ d +e+l++ e+ k klg+rv+vgyP L+Ea+v +vsdelf+y+  l+e+
  KKY22615.1 719 GLVDGVKVGAAALAGFPSLKTLNHVGSLGFHGVNVFQSESRNESMVVTLVD-SETLTNVEHGKLKLGQRVHVGYPLLQEAEVEKVSDELFDYT--LSET 814
                 9**************************************************.9****************************************..6789 PP

                 SSEEEEEE--THHHHHHHHHHHHHHHHHHHHHH-EEES--S-EEEEEEEEEEEE-TTS-EEEEE-SS-EE...EEGGG-BS--SS--GGGS-B CS
     XRN1_D1 100 kkkkvvsrphsekekkefkkkaerierkyskrlgviigevevlvhveplkGLkrteeGalvKeyeeeeeleteyalqlvveevaneDeRfiek 192
                 +  +v+++ph++ke+++++kkaerie+ yskrlg+iig+ve+ ++v++lkGLk++++G+l+Ke+ e++++et +a+qlvv++v++eDeRfie+
  KKY22615.1 815 EPFQVIATPHNDKEIEQWHKKAERIEQFYSKRLGMIIGSVESTISVKMLKGLKKMDDGSLIKEFVETPGIETIHATQLVVDKVISEDERFIER 907
                 999*****************************************************************************************8 PP

>> XRN1_D2_D3  Exoribonuclease Xrn1 D2/D3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   0.0   2.8e-35   7.3e-32       1      87 []     911     996 ..     911     996 .. 0.99

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 2.8e-35
                 -HHHHS-TT-EEEE-SCTCTTEEEEEEEESSSEEEEEEEBS-SS---SHHHHHHHHHHHHS-EE------EEHHHHHHHHHHHCHXX CS
  XRN1_D2_D3   1 pieeEFPegskvffLGeyaYGrpaevtghsekklsvvlaklksekepefgkkrikeaeksnrYlpsfavakklglsplvLskitSsF 87 
                 pi eEFP g ++ffLG+yaYGrp++vtg +++k++++++++k+ ++ efg++++++aeks++Y+ps+ava++l+l+pl+Lsk+tSsF
  KKY22615.1 911 PIGEEFPIGARAFFLGDYAYGRPLTVTGSQNNKAQCLISITKA-RQYEFGRDIARQAEKSCPYIPSYAVARNLQLNPLALSKLTSSF 996
                 89****************************************9.******************************************9 PP

>> SH3_12  Xrn1 SH3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.2   1.8e-25   4.7e-22       1      68 []    1152    1222 ..    1152    1222 .. 0.95

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 1.8e-25
      SH3_12    1 qqfrLgdrVvyvrdngksVPlGlrGtVVg....rsdtlleVlfDeeflsgtdlggrcskmrgifvpptdlln 68  
                  q+f++gdrV+y  d+gk VP+ +rGtVVg    + +tll+V+fD  f+sgt+lg+rcs++rg +v+++++ln
  KKY22615.1 1152 QTFHIGDRVIYAADSGK-VPIASRGTVVGltttSRTTLLDVIFDSSFMSGTTLGDRCSPFRGQTVASWTVLN 1222
                  689*************7.************998657999*******************************98 PP

>> Xrn1_D3  Exoribonuclease 1 Domain-3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.1   2.9e-09   7.4e-06       2      69 ..    1076    1144 ..    1075    1145 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 2.9e-09
     Xrn1_D3    2 dellkeiaewLKkvk.adlvkVslESdSltkfSiaaiEdyvenYivqevklesKdlagVPrdAvldpst 69  
                  + ++kei+ wLK++   ++ kV  E + l    +++iE+  +  i  e++   + ++g+Pr A+l ps 
  KKY22615.1 1076 KAKIKEIQAWLKEIDvKNFEKVPYEAEQLDSEAVKQIEQAADALIRSEPPAAAQTMNGIPRSALLKPSD 1144
                  5689*********97359*************************************************95 PP

>> TIMELESS  Timeless protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0032       8.1     201     259 ..      58     117 ..      46     125 .. 0.76
   2 ?    5.4   0.0    0.0037       9.4       2      25 ..    1069    1093 ..    1068    1097 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0032
    TIMELESS 201 eqfnllllEiiylllkgqdpeeLa....kesekesrstkeasrasdelskllekekakkkasi 259
                 +++ ++++  i +l+ +++p++L+    +     + ++k ++++++++++ l+ eka++ka +
  KKY22615.1  58 DKMFITIFNYIEHLFGKIKPRKLFfmaiDG---VAPRAKMNQQRARRFRTALDAEKAREKAIK 117
                 4567889999**************866522...233456677888999999999998888766 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0037
    TIMELESS    2 YklgddclecLkdLkrwlrl.Dddd 25  
                  Y  g+dc + +k+++ wl++ D+++
  KKY22615.1 1069 YYPGEDCKAKIKEIQAWLKEiDVKN 1093
                  999*****************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.52
# Mc/sec: 8117.38
//
Query:       KKY22616.1  [L=462]
Description: putative pyruvate dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-38  132.1   0.0    5.8e-38  131.0   0.0    1.4  1  PP2C      Protein phosphatase 2C
  ------ inclusion threshold ------
      0.011   15.6   0.0        2.3    8.1   0.0    2.7  3  SpoIIE    Stage II sporulation protein E (SpoIIE)


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.0   0.0   6.5e-42   5.8e-38      29     236 ..     118     378 ..      97     389 .. 0.86

  Alignments for each domain:
  == domain 1  score: 131.0 bits;  conditional E-value: 6.5e-42
                 CCCCCCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHCHTTH.............HHHHHHHHHHHHHHHHHHHH..........HHHH.....C.HCC CS
        PP2C  29 sgkssvsffavfdghggseaakyarehleeilksqksfeele.............kleqalrksfladtdeelks..........skan.....t.eps 98 
                 ++ +++   +vfdgh+g e+a +  ehl +++++     +                 ++a++++fl+ +d++l +          +        +  p 
  KKY22616.1 118 GPGEDWMAWGVFDGHAGWETAALLTEHLIPHVQRGLANITNIllggeevagtlnsTIDAAIKSAFLE-LDDNLVKqaptiaasaaP--FaekvsRlIPG 213
                 6678899999******************955554433333335556689999999999*********.666665558887765551..0445556799* PP

                 T-EEEEEEEEEETTE..EEEEEESS-EEEEEETTEEE....EECS---STTSHHHHHHHHHTT--EEE..CCEEETTTBSBSB-EE-GGGTCCCC.... CS
        PP2C  99 ksGstavvalirgtk..lyvAnvGDSravLcrkgnak....keltedHkpsdedEreRIeeaggsvsn..gegrvngsLavsRalGDlelkpket.... 185
                 + Gs+a+++l+ + +  l vA +GDSravL+r+ +++    +el+ d++p++ dE++R++++++   +  +  rv+g   vsRa+GD + k +++    
  KKY22616.1 214 YAGSCALLSLYDPATnlLRVACTGDSRAVLGRQLHDGtwetVELSADQTPKNLDEAARLNKEHPNEPEmlKGDRVLGI-MVSRAFGDGRWKLDQKtqee 311
                 ************************************99*******************************9********.9*******9999877789** PP

                 ...............CCSTSB---EEEEEEE-TT.EEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHT CS
        PP2C 186 ...............eeqlvsaePdvtsvkltee.defliLacdGlwdvlsdqeavdlvrdelekkk 236
                                ++++ +aeP +t+++++ e  +fliLa+dG+wd++s+ +avdlv+++l+ k+
  KKY22616.1 312 akkkyngpaprpnfqTPPYLTAEPVITTTHIDLEnPSFLILASDGMWDMMSSSQAVDLVNKWLSWKS 378
                 ********************************999***************************99544 PP

>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0033        30      41      92 ..     197     247 ..     164     266 .. 0.72
   2 ?    8.1   0.0   0.00025       2.3     110     143 ..     333     366 ..     322     388 .. 0.82
   3 ?   -2.7   0.0      0.51   4.6e+03     173     189 ..     440     456 ..     412     458 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0033
                 HHHHHHHHHHCHCTTSTT.TTCEEEEEEEETTTTEEEEEEESSSSEEEEETT CS
      SpoIIE  41 aevlkrlnralardleeeerfaTavlavydpstgkleyanaGhpppllvrpd 92 
                 a  ++   ++++r ++    +  a+l  ydp+t+ l++a  G++  +l r+ 
  KKY22616.1 197 AASAAPFAEKVSRLIPGY-AGSCALLSLYDPATNLLRVACTGDSRAVLGRQL 247
                 444444555554444444.778899999****************99998874 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00025
                 SST-EEEEEEE--TTEEEEEESCCCCSSSHHHHH CS
      SpoIIE 110 peadyetaelelepgdtlllyTDGvtEardsdge 143
                 +e  ++t++++le+ + l+l++DG+ + ++s++ 
  KKY22616.1 333 AEPVITTTHIDLENPSFLILASDGMWDMMSSSQA 366
                 5678899******************998865554 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.51
                 HHHHTTSSSSS-EEEEE CS
      SpoIIE 173 llelgsgeleDDitllv 189
                 ++++ s++ +DD+t+ v
  KKY22616.1 440 FKPTRSRNARDDLTVQV 456
                 3447788999**99966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3064.12
//
Query:       KKY22617.1  [L=347]
Description: hypothetical protein UCRPC4_g03234 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-25   86.5   0.1    9.5e-16   57.4   0.0    2.6  2  ACT_7     ACT domain


Domain annotation for each model (and alignments):
>> ACT_7  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   5.3e-20   9.5e-16       2      64 ..       3      63 ..       2      64 .. 0.97
   2 !   26.7   0.1     2e-10   3.6e-06       3      63 ..     256     327 ..     254     329 .. 0.94

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 5.3e-20
                EEEEEEEEEE-S-.---SS--HHHHHHHHHHTTT---EEEE-SS-EEEEEEGGGHHHHHHHHH CS
       ACT_7  2 sedgwiklsvvgsglpfdvtGivaklaspLaeagIsifqiStyrtdyiLVpeedlekAveaLh 64
                s++++++++v+g+gl  d+  +v +l++pLa agIsif+ +ty++dyiLVp +    +v aL+
  KKY22617.1  3 SPEDYVVIQVEGQGL--DAGQRVLELTRPLAMAGISIFFKTTYFSDYILVPLKARSSVVTALE 63
                6899***********..9********************************************8 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 2e-10
                 EEEEEEEEE-S-.---SS--HHHHHHHHH...........HTTT---EEEE-SS-EEEEEEGGGHHHHHHHH CS
       ACT_7   3 edgwiklsvvgsglpfdvtGivaklaspL...........aeagIsifqiStyrtdyiLVpeedlekAveaL 63 
                 +d+ i++ ++   lp+++tGiv ++a+ L               ++i ++St+  + +LV+e+dl kA+ a 
  KKY22617.1 256 DDTLIPIILDLRELPLEATGIVCGVAATLsrdtaintsegQPDAVEISFLSTAKAGTVLVKENDLSKALGAM 327
                 68999*******************************98888889************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2351.58
//
Query:       KKY22618.1  [L=387]
Description: putative cell division control protein 12 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.5e-112  373.9   0.2     7e-112  373.3   0.2    1.3  1  Septin           Septin
    6.8e-08   32.6   0.0    1.5e-07   31.5   0.0    1.6  1  MMR_HSR1         50S ribosome-binding GTPase
    4.4e-06   26.7   0.7    2.4e-05   24.3   0.0    2.4  3  RsgA_GTPase      RsgA GTPase
    6.1e-06   25.9   3.4    4.1e-05   23.2   0.2    2.6  2  GTP_EFTU         Elongation factor Tu GTP binding domain
     0.0028   17.2   0.1     0.0052   16.3   0.1    1.4  1  Pox_A32          Poxvirus A32 protein
     0.0029   17.8   0.1     0.0065   16.7   0.1    1.6  1  Roc              Ras of Complex, Roc, domain of DAPkinase
      0.003   17.8   0.6     0.0079   16.5   0.1    2.0  2  AAA_22           AAA domain
     0.0064   15.6   0.0      0.013   14.6   0.0    1.5  1  IIGP             Interferon-inducible GTPase (IIGP)
     0.0096   16.5   1.2      0.038   14.6   1.2    2.0  1  FOXP-CC          FOXP coiled-coil domain
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.022   14.1   0.0    1.5  1  AIG1             AIG1 family
      0.016   14.9   0.0      0.031   14.0   0.0    1.6  1  AAA_24           AAA domain
      0.027   14.9   0.6      0.068   13.5   0.0    2.1  2  AAA_16           AAA ATPase domain
      0.028   14.0   2.1      0.059   13.0   0.4    2.3  2  Ras              Ras family
       0.04   13.2   0.1      0.058   12.6   0.1    1.6  1  KAP_NTPase       KAP family P-loop domain
      0.055   14.0   0.2        0.2   12.2   0.0    2.0  2  ABC_tran         ABC transporter
      0.056   13.4   0.0        0.1   12.5   0.0    1.4  1  NACHT            NACHT domain
      0.078   12.7   0.1       0.16   11.7   0.1    1.5  1  Sigma54_activat  Sigma-54 interaction domain
       0.11   12.0   0.2       0.41   10.2   0.0    2.0  2  AAA_25           AAA domain
       0.11   12.9   0.0       0.27   11.6   0.0    1.7  1  RNA_helicase     RNA helicase
       0.12   12.1   0.4        4.9    6.9   0.4    2.6  1  PduV-EutP        Ethanolamine utilisation - propanediol utili
       0.44   10.6   6.6        2.7    8.0   0.1    3.1  3  Dynamin_N        Dynamin family
        1.5    8.5   6.4         18    5.0   3.0    2.2  2  AAA_11           AAA domain
        4.5    7.5   6.6        6.8    6.9   1.2    3.1  2  Myc-LZ           Myc leucine zipper domain
          5    6.6  13.3        1.9    8.0   7.5    2.7  3  DegS             Sensor protein DegS


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  373.3   0.2  9.3e-115    7e-112       1     276 [.      27     305 ..      27     310 .. 0.94

  Alignments for each domain:
  == domain 1  score: 373.3 bits;  conditional E-value: 9.3e-115
                 XEEEEEEEEEEBTTSSCCCCCCTTSSSS------------.------S-EEEEEEEEETTCEEEEEEEE---BSSSSSHHCCCHHHHHHHHHHHHHHHH CS
      Septin   1 kgieftlmvvGesglGkttlintlfetdlieeekleease.kkkktveikkkkvvieedgvklnltviDtpgfGdavdnskswepiveyideqfeeylr 98 
                 +g  ft+mv+GesglGktt+intlf+t++++   +++++  ++ ktvei+ +k+++ee+ +k++ltviDtpgfGd v+n++sw pi+e++d+q+e+y+ 
  KKY22618.1  27 RGAAFTIMVAGESGLGKTTFINTLFSTTIKNYADHKKRHAkQMDKTVEIEITKAELEEKFFKVRLTVIDTPGFGDYVNNRDSWMPIIEFLDDQHESYML 125
                 6899**************************998877776648899****************************************************** PP

                 HCTSS--SS-----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT--------SSSS-SCCHHHHHHH CS
      Septin  99 eesklkRkkivDkRvHaclyfisPtghglkpldvelmkklsekvnliPviaKaDtltkeElkefKkkireeleeeeikiyklpdeeededeeakelsek 197
                 +e++ kR+ ++D RvHaclyfi+Ptgh lkpld+e+mk+ls++vnliPv+aKaDtl   +l +fK ++r+ +e++ ikiy+ p+ eed+ e+a++++++
  KKY22618.1 126 QEQQPKRADKIDLRVHACLYFIRPTGHTLKPLDIEVMKRLSSRVNLIPVVAKADTLSPGDLARFKARVRSVIEAQGIKIYQ-PPVEEDD-EQAAQHARS 222
                 *********************************************************************************.7777776.56699**** PP

                 HHHC-SEEB-SSSSEEEE....SSSEEEEEEETTEEEETT-TTT-SCCHHHHHHHHHCHHHHHHHHHHTHHHHHHHHHH-XXX CS
      Septin 198 lkeslPfaivgsneliek....kgkkvrgRkypWGvvevenekhsdFlkLrklllkthledLkevteellYetyRseklsklk 276
                 l +++Pfa++gs++ ++     ++k v+gR+y WGv evene+h+dF+kLr++l++th+ dL+++tee +Ye yR+++++++k
  KKY22618.1 223 LMAAMPFAVIGSEKDVKVqdgkDVKIVKGRQYAWGVAEVENEDHCDFKKLRSILIRTHMLDLIHTTEEAHYEAYRAQQMETRK 305
                 **************99876233445679***************************************************9987 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0     2e-10   1.5e-07       2     101 ..      33     165 ..      32     177 .. 0.61

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 2e-10
                 EEEEESTTSSHHHHHHHHHT........STEEESSSTTSSSSEEEEEEE....ETTEEEEEEECGGC.............SS...HHHHHHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg........ekaivsdkpgtTrdinegrvk....lkgkeielvDtpGl.............ie...gaseekglgkafla 72 
                 ++++G +  GK+t+in+l+          k + +++  +T +i+  + +    + + +++++DtpG+             ie   +++e+ +l+++  +
  KKY22618.1  33 IMVAGESGLGKTTFINTLFSttiknyadHKKRHAKQMDKTVEIEITKAEleekFFKVRLTVIDTPGFgdyvnnrdswmpiIEfldDQHESYMLQEQQPK 131
                 89****************96555545423778888889999998888874333224679*******777666666666652233244444444444433 PP

                 .....HHCTSEEEEEEETTTTCSHHHHHHHHHHH CS
    MMR_HSR1  73 .....leeadlillvvdaseeklkpldeeleell 101
                        ++++ l+ ++ + ++lkpld e+ + l
  KKY22618.1 132 radkiDLRVHACLYFIRPTGHTLKPLDIEVMKRL 165
                 2222123355566666544556777777776665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.1e-08   2.4e-05      94     162 ..      25     100 ..      10     103 .. 0.79
   2 ?   -1.2   0.0       2.2   1.6e+03      44      74 ..     166     195 ..     156     234 .. 0.63
   3 ?   -2.7   0.2       6.6   4.9e+03      65      97 ..     334     366 ..     321     376 .. 0.61

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 3.1e-08
                  HHHCTTSEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETT.......TEEEESS-SSS CS
  RsgA_GTPase  94 kellkdktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelae.......gglliDtPGfr 162
                  +++ +  t++++G+SG GK+t+in+l +++  + ++ ++++ +    T + e+ + +          ++iDtPGf 
   KKY22618.1  25 AKRGAAFTIMVAGESGLGKTTFINTLFSTTIKNYADHKKRHAKQMDKTVEIEITKAELeekffkvRLTVIDTPGFG 100
                  44555578899******************999999999999999999998888776543355555689******96 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.2
                  HTT-EEEEEEE-GGG--HHHHHHHHHHHHHH CS
  RsgA_GTPase  44 ekgiepvivlnKiDlleeeeeleelkeelea 74 
                  +++++++ v+ K+D l+  + l ++k+++++
   KKY22618.1 166 SSRVNLIPVVAKADTLSPGD-LARFKARVRS 195
                  56788888999999999988.4444444433 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 6.6
                  HHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHC CS
  RsgA_GTPase  65 leelkeelealgyevllvsaktkegleelkell 97 
                  ++  ++++++++ ++++ + k +++le+ ++++
   KKY22618.1 334 VKVEEQRFRQWEQKLIAERDKLNKDLETTHAAI 366
                  555566666666666666555555555544444 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.2   5.4e-08   4.1e-05       5      87 ..      32     106 ..      29     114 .. 0.79
   2 ?    2.9   0.4      0.09        67     120     154 ..     166     217 ..     159     382 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 5.4e-08
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHH CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskev 87 
                 +i+++g    GKtT++ +L  +t +   +++k+  ++++D++       + i+++ ++le++  k ++++iDtPG  d++++ 
  KKY22618.1  32 TIMVAGESGLGKTTFINTLFSTTIKNYADHKKRH-AKQMDKT-------VEIEITKAELEEKFFKVRLTVIDTPGFGDYVNNR 106
                 68999***************88888777555443.4445554.......447777777777788****************986 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.09
                 HTTTEEEEEEESCGST....HHHHHHHHHHHHHHHHHH................H CS
    GTP_EFTU 120 kegvpiivfiNKmDrl....kaelkeiveevkqklsrk................e 154
                 + +v++i ++ K+D l         + +  v++ ++++                 
  KKY22618.1 166 SSRVNLIPVVAKADTLspgdL---ARFKARVRSVIEAQgikiyqppveeddeqaA 217
                 568999999999999985553...4444444444433333344455544443330 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1     7e-06    0.0052      12      41 ..      29      58 ..      19      62 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 7e-06
     Pox_A32 12 kpFrlalvGgsGsGktvyLlsLlrtlvkky 41
                + F + + G+sG Gkt+++  L++t +k+y
  KKY22618.1 29 AAFTIMVAGESGLGKTTFINTLFSTTIKNY 58
                5799************************99 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   8.7e-06    0.0065       2      68 ..      33     101 ..      32     111 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 8.7e-06
                 EEEESSTTSSHHHHHHCHCT-CCC-E.EETTTTEEEEEEECG.GSGGCTTBTTTTCEEEEEEEE-SGGC CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsek.ekstigvdfltkevt.kikgvendkkvkkvklniWDtaGqer 68 
                 +++ G+sg GKt++++ + + ++++   ++   ++ ++k+v+ +i++ e ++k  kv+l + Dt G  +
  KKY22618.1  33 IMVAGESGLGKTTFINTLFSTTIKNYaDHKKRHAKQMDKTVEiEITKAELEEKFFKVRLTVIDTPGFGD 101
                 8999**************998886441233333444444442256677778888899****99998655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   1.1e-05    0.0079       8      51 ..      33      81 ..      27     170 .. 0.70
   2 ?   -2.2   0.1       6.3   4.7e+03      63      87 ..     313     335 ..     283     371 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.1e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaee......erpevvfvtlpsst 51
                ++v GesG GKTt +++l+++  + ++a++      + +++v++++++ +
  KKY22618.1 33 IMVAGESGLGKTTFINTLFSTT-IKNYADHkkrhakQMDKTVEIEITKAE 81
                7899***************986.555555566888844444455544443 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 6.3
      AAA_22  63 alglelkaerlsseellealeqalr 87 
                 +l++++ +   ++e l+++++++++
  KKY22618.1 313 KLDNPKFK--EEEENLRKRFTEQVK 335
                 45555555..455555555554443 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.8e-05     0.013      31      56 ..      26      51 ..      18     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.8e-05
                HHT--EEEEEEESTTSSHHHHHHHHT CS
        IIGP 31 iesaklkiavtGdsGnGkssFinaLR 56
                +  a   i+v G+sG Gk +Fin+L 
  KKY22618.1 26 KRGAAFTIMVAGESGLGKTTFINTLF 51
                5567789*****************94 PP

>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   1.2   5.1e-05     0.038      28      63 ..     322     357 ..     318     363 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.1e-05
     FOXP-CC  28 seHalddkstaqlrvqmqvvqqlekqlvkEkerLqa 63 
                 +e +l ++ t+q++v  q+ +q e++l++E+++L++
  KKY22618.1 322 EEENLRKRFTEQVKVEEQRFRQWEQKLIAERDKLNK 357
                 6788999***************************85 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     3e-05     0.022       2      67 ..      32     107 ..      31     121 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3e-05
                 EEEEESSTTSSHHHHHHHH....HTS--SS--TTTS---SS-EEEEE..EETT....EEEEEEE--SCCCTTCCHH CS
        AIG1   2 tivlvGktgnGkSaTgNsi....lgkkaFesklsaqsvtkkcqkksr..twdg....kkinViDTPglfdlsvsad 67 
                 ti++ G +g Gk + +N++    +++ a + k +a+++ k+++ + +  + ++     ++ ViDTPg  d  ++ d
  KKY22618.1  32 TIMVAGESGLGKTTFINTLfsttIKNYADHKKRHAKQMDKTVEIEITkaELEEkffkVRLTVIDTPGFGDYVNNRD 107
                 899****************555544444555556777766666554421222223336789******988877665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.1e-05     0.031       4      22 ..      32      50 ..      29     125 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.1e-05
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                 i++ G+sg GKTt++++l
  KKY22618.1 32 TIMVAGESGLGKTTFINTL 50
                699**************99 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   9.2e-05     0.068      26      51 ..      32      57 ..      21     227 .. 0.81
   2 ?   -0.9   0.1       2.5   1.8e+03      79     113 ..     338     371 ..     272     383 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.2e-05
      AAA_16 26 lvllsGesGvGKsslvrellralekd 51
                 +++ GesG GK++ +++l+    k+
  KKY22618.1 32 TIMVAGESGLGKTTFINTLFSTTIKN 57
                689*****************766555 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.5
      AAA_16  79 eellrqlldeaesaeleawrekleealaavpelag 113
                 e+ +rq ++++ + e++   + le++ aa+++l++
  KKY22618.1 338 EQRFRQWEQKLIA-ERDKLNKDLETTHAAIKQLES 371
                 2344444444333.333333333333334444444 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4   7.9e-05     0.059       2      68 ..      33     109 ..      32     114 .. 0.75
   2 ?   -0.8   0.1       1.3     1e+03     103     131 ..     225     255 ..     211     271 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.9e-05
                 EEEEESTTSSHHHHHHHHH..........HSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHH CS
         Ras   2 lvlvGdsavGKtslllrfv..........kdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrely 68 
                 +++ G+s+ GKt++++             k++  +++++T+ ++ +++e+e +  +v+l++ DT G  ++ + r++ 
  KKY22618.1  33 IMVAGESGLGKTTFINTLFsttiknyadhKKRHAKQMDKTVEIEITKAELEEKFFKVRLTVIDTPGFGDYVNNRDSW 109
                 5788********998764311111111223567788999**99999999999999***********99998777665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.3
                 TTSEEEEEEETTTGGG..G-SS-HHHHHHHH CS
         Ras 103 envpivLvGnKvDlee..kravsteegeela 131
                   +p++++G   D++    + v+  +g+++a
  KKY22618.1 225 AAMPFAVIGSEKDVKVqdGKDVKIVKGRQYA 255
                 5689999999999876335788888888877 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   7.8e-05     0.058      18      48 ..      28      58 ..      18     367 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.8e-05
  KAP_NTPase 18 atpivvgLygkWGsGKssllnkledelkefa 48
                +  +++++ g+ G+GK++++n l +   ++ 
  KKY22618.1 28 GAAFTIMVAGESGLGKTTFINTLFSTTIKNY 58
                6789*****************9988766554 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00027       0.2      13      38 ..      32      57 ..      25     143 .. 0.68
   2 ?   -1.4   0.2       4.2   3.1e+03      54      80 ..     327     357 ..     277     383 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00027
                EEEEEESTTSSHHHHHHHHTTSS--S CS
                xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkpt 38
                ++ + Ge+G GK+t++++l   + ++
  KKY22618.1 32 TIMVAGESGLGKTTFINTLFSTTIKN 57
                56789*************98877652 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 4.2
                 HHHCCHCEEEE-SS--S-TTSBHHHH....H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx....x RF
    ABC_tran  54 leslrkeigvlpqepqlfpeltvren....e 80 
                 ++++ ++++v +q  + ++++ ++e+    +
  KKY22618.1 327 RKRFTEQVKVEEQRFRQWEQKLIAERdklnK 357
                 3334444444444433333333444343331 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00014       0.1       2      31 ..      32      61 ..      31      66 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00014
                CEEEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawaegklpq 31
                ++++ Ge+G GKTt++  l ++  +++ ++
  KKY22618.1 32 TIMVAGESGLGKTTFINTLFSTTIKNYADH 61
                689***************998877776665 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00022      0.16      17      45 ..      25      58 ..      13      92 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00022
                     HHCTSSS-EEEECSTTSSHHHHHHHHHH.....H CS
  Sigma54_activat 17 kvaktdlsvlitGesGtGKellaraihe.....a 45
                     +      ++++ GesG GK+++ +++++      
       KKY22618.1 25 AKRGAAFTIMVAGESGLGKTTFINTLFSttiknY 58
                     33344589***************99998444430 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00054      0.41      11      53 ..       9      50 ..       2     134 .. 0.83
   2 ?   -1.5   0.3       2.1   1.6e+03      86     140 ..     326     376 ..     320     380 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00054
      AAA_25 11 svadlaapppprrwlvkgllpagelallaGapgtGKttlaldl 53
                s  ++a+ p +r ++v     a  ++++aG +g GKtt+   l
  KKY22618.1  9 SPIGIANLPNQRHKIVAKR-GAAFTIMVAGESGLGKTTFINTL 50
                5567788888999999998.89****************97655 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.1
      AAA_25  86 lrrRlravg..ealrddarllvldlagveslpLfakdrggtlltadvdaleaaieev 140
                 lr+R+ ++   e++r++++++ l +++       ++ ++ +++ a++++le ++e++
  KKY22618.1 326 LRKRFTEQVkvEEQRFRQWEQKLIAERD------KLNKDLETTHAAIKQLESDLEQM 376
                 5555555443333344444433322211......12334444567777777777765 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00036      0.27       1      32 [.      33      64 ..      33      87 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00036
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallkklklkkkd 32
                  i++ G+sg GK+t++++L ++  k++ ++kk 
    KKY22618.1 33 IMVAGESGLGKTTFINTLFSTTIKNYADHKKR 64
                  6899*************999999888555544 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.4    0.0065       4.9       4      27 ..      33      56 ..      31     132 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0065
   PduV-EutP  4 illiGkvgsGKttLtqalkgeelk 27
                i++ G++g GKtt  ++l   ++k
  KKY22618.1 33 IMVAGESGLGKTTFINTLFSTTIK 56
                899999999999999998775554 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.028        21       1      21 [.      33      53 ..      33      57 .. 0.88
   2 ?    8.0   0.1    0.0036       2.7      72     120 ..      58     118 ..      51     136 .. 0.57
   3 ?   -0.6   1.0       1.6   1.2e+03      48      85 ..     323     361 ..     295     378 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.028
                EEEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlge 21
                i+v G+   GK++++n L   
  KKY22618.1 33 IMVAGESGLGKTTFINTLFST 53
                7999*************9865 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0036
                 HHHHHHHHHTSSSS--SS-EEEE..EEETTS-SEEEEE---B-S.SSGTTS.........H CS
   Dynamin_N  72 ieketekiagankgiskkvillk..ilsllvkgltlvDlPGlds.vnkrdq.........e 120
                 + ++++++a++++++ ++ i+      ++ + +lt++D+PG+ + vn+rd          +
  KKY22618.1  58 YADHKKRHAKQMDKTVEIEITKAelEEKFFKVRLTVIDTPGFGDyVNNRDSwmpiiefldD 118
                 444444444444444444333320134566889*********9856666656555544443 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.6
                 CS...SSEEEE.T-EB--CHHHHHHHHHHHHHHHTSSSS CS
   Dynamin_N  48 eravkeelkek.ekkledfsevreeieketekiagankg 85 
                 e++ ++++ e+ + +++ f + ++++ +e++k+++ +++
  KKY22618.1 323 EENLRKRFTEQvKVEEQRFRQWEQKLIAERDKLNKDLET 361
                 233333444445556666666666666666666654444 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1      0.03        22      19      50 ..      32      63 ..      15      80 .. 0.69
   2 ?    5.0   3.0     0.024        18     121     190 ..     294     368 ..     228     381 .. 0.60

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.03
      AAA_11 19 itliqGPPGtgKTktivellsqllsr....rkseee 50
                  ++ G  G gKT++i  l+s  +++    +    +
  KKY22618.1 32 TIMVAGESGLGKTTFINTLFSTTIKNyadhK----K 63
                56899*****************986633221....1 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.024
      AAA_11 121 e...kaqlakeiskeleklakelrafeeeeek..eklkkskekskskleqerrklkkerkelskeleeaeeslee 190
                 e    +q+  ++  e ++ + ++ +f+eeee+  ++  ++ + ++++ +q ++kl +er++l+k+le++ +++++
  KKY22618.1 294 EayrAQQMETRKFGEARPRKLDNPKFKEEEENlrKRFTEQVKVEEQRFRQWEQKLIAERDKLNKDLETTHAAIKQ 368
                 022233333333333333333333333333335566667777777777777788888888888888888777764 PP

>> Myc-LZ  Myc leucine zipper domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.4      0.46   3.4e+02       9      21 ..     322     335 ..     315     341 .. 0.78
   2 ?    6.9   1.2    0.0091       6.8       3      30 ..     345     379 ..     345     380 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.46
      Myc-LZ   9 ekEqLRkr.rEqLK 21 
                 e E LRkr  Eq K
  KKY22618.1 322 EEENLRKRfTEQVK 335
                 889****9556665 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0091
      Myc-LZ   3 EqrLlSekEqLRkrrE.......qLKhkLeQLrNS 30 
                 Eq+L++e + L k  E       qL   LeQ+++S
  KKY22618.1 345 EQKLIAERDKLNKDLEtthaaikQLESDLEQMQGS 379
                 9**********997665555555566666666665 PP

>> DegS  Sensor protein DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.3   9.5e+02      37      67 ..      67      94 ..      49     105 .. 0.57
   2 ?    0.2   1.4       0.6   4.5e+02      70     106 ..     292     329 ..     282     333 .. 0.86
   3 ?    8.0   7.5    0.0025       1.9      80     131 ..     327     376 ..     318     381 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.3
        DegS 37 eelkeevsevikevdklekkerkarkrLaeV 67
                +++ ++v+    e+ k e +e+  + rL+ +
  KKY22618.1 67 KQMDKTVEI---EITKAELEEKFFKVRLTVI 94
                333333333...4445666777777777766 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.6
        DegS  70 dFkkyseeeik.eaYeeakelqvelallrekEkqlrer 106
                 +++ y+ ++++ + + ea+  +++    +e+E++lr+r
  KKY22618.1 292 HYEAYRAQQMEtRKFGEARPRKLDNPKFKEEEENLRKR 329
                 78999999997257999999999999**********98 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0025
        DegS  80 keaYeeakelqvelallrekEkqlrerRdelerrLkklketierAeklvsqv 131
                 ++ +  +++++ve +  r+ E++l++ Rd+l+++L+++++ i++ e+ ++q+
  KKY22618.1 327 RKRF--TEQVKVEEQRFRQWEQKLIAERDKLNKDLETTHAAIKQLESDLEQM 376
                 4444..578999*******************************999877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1633  (0.0910815); expected 358.6 (0.02)
Passed bias filter:                      681  (0.0379832); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.69u 0.34s 00:00:01.03 Elapsed: 00:00:00.52
# Mc/sec: 2249.26
//
Query:       KKY22619.1  [L=913]
Description: putative small nucleolar ribonucleoprotein complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-40  134.2  24.8    2.6e-09   37.6   0.1   12.3 13  WD40          WD domain, G-beta repeat
    2.8e-20   72.4   0.0     0.0051   17.1   0.0   10.0 10  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    7.8e-18   64.8   0.0    1.3e-17   64.0   0.0    1.4  1  Utp12         Dip2/Utp12 Family
    2.7e-10   39.7   0.1      0.044   12.7   0.0    5.3  5  Ge1_WD40      WD40 region of Ge1, enhancer of mRNA-decapping 
    3.5e-06   27.0   0.7      0.019   14.8   0.0    5.2  7  eIF2A         Eukaryotic translation initiation factor eIF2A
    0.00089   18.7   0.6        1.7    7.9   0.0    3.0  3  Nbas_N        Neuroblastoma-amplified sequence, N terminal
     0.0041   16.5   0.0       0.31   10.3   0.0    3.3  4  WD40_like     WD40-like domain
     0.0062   16.4   1.8         17    5.5   0.1    4.9  5  PD40          WD40-like Beta Propeller Repeat
  ------ inclusion threshold ------
      0.012   15.4   0.1      0.031   14.1   0.1    1.6  1  Tail_spike_N  Tail spike TSP1/Gp66 receptor binding N-termina
      0.016   15.2   0.3         15    5.6   0.0    3.8  4  DUF5074       Domain of unknown function (DUF5074)
       0.15   11.1   0.1        9.2    5.2   0.0    2.6  2  DUF1513       Protein of unknown function (DUF1513)


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0017       2.8       9      33 ..      53      78 ..      43      81 .. 0.84
   2 ?    3.8   0.0     0.073   1.2e+02      10      37 ..      92     122 ..      86     123 .. 0.67
   3 !   21.1   0.2   2.5e-07    0.0004       5      38 .]     145     179 ..     142     179 .. 0.91
   4 ?   -1.5   0.0       3.6   5.8e+03       6      32 ..     190     217 ..     188     222 .. 0.72
   5 ?    0.9   0.0      0.59   9.6e+02      13      29 ..     259     275 ..     250     280 .. 0.82
   6 ?    5.6   0.1     0.019        31       9      37 ..     297     326 ..     288     327 .. 0.76
   7 !   26.9   0.0   3.8e-09   6.2e-06       9      38 .]     339     369 ..     330     369 .. 0.89
   8 !   24.4   0.5   2.2e-08   3.6e-05       4      38 .]     376     411 ..     373     411 .. 0.93
   9 ?    3.7   0.1     0.082   1.3e+02      14      37 ..     430     454 ..     415     455 .. 0.72
  10 !   37.6   0.1   1.6e-12   2.6e-09       1      38 []     459     497 ..     459     497 .. 0.94
  11 ?    5.1   0.0     0.029        47      12      37 ..     513     538 ..     505     539 .. 0.89
  12 ?   -0.3   0.1       1.5   2.4e+03      14      36 ..     577     599 ..     568     600 .. 0.75
  13 ?   -1.1   0.0       2.6   4.2e+03      10      29 ..     673     694 ..     668     700 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0017
                SS.SSEEEEEEETTSSEEEEEETTSE CS
        WD40  9 GH.ssvtslafspdgawlasGsdDgt 33
                +H +++ts++ +p g++l+s ++Dg 
  KKY22619.1 53 AHrKNITSIDLNPKGNLLLSVDEDGR 78
                8*999**************9898985 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.073
                 S....SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  10 H....ssvtslafspdgawlasGsdDgtvriW 37 
                 H    s+v++laf p+g+ +a     +++ +W
  KKY22619.1  92 HfsfkSPVSALAFAPSGKHFAV-AIGRKIQVW 122
                 4312245************873.555555555 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 2.5e-07
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 r++ GH + + sl +s d+++++s+s+D t riW+
  KKY22619.1 145 REYGGHfDAIQSLVWSVDSRFFLSASKDLTARIWS 179
                 6799**666*************************5 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 3.6
                 EEESS.SSEEEEEEETTSSEEEEEETTS CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDg 32 
                 +l GH  sv +  fs ++  +++ s Dg
  KKY22619.1 190 VLAGHrESVKAAWFSANQESIFTISQDG 217
                 5779988898888888887776545565 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.59
                 EEEEEEETTSSEEEEEE CS
        WD40  13 vtslafspdgawlasGs 29 
                 v++ +f+p +++l+ G 
  KKY22619.1 259 VNCASFHPISKLLTVGF 275
                 9***********99883 PP

  == domain 6  score: 5.6 bits;  conditional E-value: 0.019
                 SSSSEEEEEEETTSSEEEEE.ETTSEEEEE CS
        WD40   9 GHssvtslafspdgawlasG.sdDgtvriW 37 
                  +s+++++a+++ g wla G s+ g + +W
  KKY22619.1 297 SQSDISHIATNKTGEWLAFGsSKHGQLLVW 326
                 3478*************9663689999999 PP

  == domain 7  score: 26.9 bits;  conditional E-value: 3.8e-09
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  H +s + la+spdg+ +++G dDg+++iWd
  KKY22619.1 339 SHmDSLNTLAYSPDGTRIITGADDGKIKIWD 369
                 68888*************************9 PP

  == domain 8  score: 24.4 bits;  conditional E-value: 2.2e-08
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + t+t H s+vts+++s+ g+ l+++s Dg+vr Wd
  KKY22619.1 376 IATFTEHsSGVTSCCYSKKGNVLFTASLDGSVRAWD 411
                 679****777*************************9 PP

  == domain 9  score: 3.7 bits;  conditional E-value: 0.082
                 EEEEEETTSSEEEEEE.TTSEEEEE CS
        WD40  14 tslafspdgawlasGs.dDgtvriW 37 
                 +s+a +p+g  ++++s d   +++W
  KKY22619.1 430 SSVAIDPSGEVVCASSlDSFDIHVW 454
                 7999*******98777689999999 PP

  == domain 10  score: 37.6 bits;  conditional E-value: 1.6e-12
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 gq+l  l+GH ++++slaf pdg+ l+sGs+D t+r+W+
  KKY22619.1 459 GQLLDQLSGHeGPISSLAFTPDGQTLVSGSWDYTIRLWS 497
                 678899****999*************************5 PP

  == domain 11  score: 5.1 bits;  conditional E-value: 0.029
                 SEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriW 37 
                  v s+++ pd++ la+++ Dg + +W
  KKY22619.1 513 EVLSVSVRPDSSQLAASTLDGQLTFW 538
                 48899**********9999****999 PP

  == domain 12  score: -0.3 bits;  conditional E-value: 1.5
                 EEEEEETTSSEEEEEETTSEEEE CS
        WD40  14 tslafspdgawlasGsdDgtvri 36 
                 +s+ +s dg+ l++++  + + +
  KKY22619.1 577 SSITYSADGSCLLAAGQSKYICL 599
                 57789999999988876666665 PP

  == domain 13  score: -1.1 bits;  conditional E-value: 2.6
                 SSS...EEEEEEETTSSEEEEEE CS
        WD40  10 Hss...vtslafspdgawlasGs 29 
                 H +   vt + f p g+ ++++s
  KKY22619.1 673 H-PevrVTNVEFAPTGRSFCAAS 694
                 4.234499********9998776 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0077        13      35      89 ..      52     104 ..      33     107 .. 0.78
   2 ?    1.8   0.0      0.18   2.9e+02      38      57 ..      96     115 ..      88     120 .. 0.87
   3 ?    2.6   0.0       0.1   1.7e+02      39      67 ..     152     180 ..     141     199 .. 0.87
   4 !    6.0   0.0    0.0091        15      37      86 ..     255     303 ..     243     309 .. 0.85
   5 !   17.1   0.0   3.1e-06    0.0051      32      82 ..     328     385 ..     307     389 .. 0.81
   6 !    6.9   0.0    0.0047       7.6      35      69 ..     380     414 ..     375     433 .. 0.82
   7 !   11.1   0.0   0.00023      0.37      30      72 ..     454     503 ..     450     513 .. 0.80
   8 ?    4.2   0.0     0.034        55      35      72 ..     508     545 ..     496     556 .. 0.83
   9 ?    4.9   0.0      0.02        32      33      79 ..     568     614 ..     549     620 .. 0.88
  10 ?    0.4   0.0      0.51   8.2e+02      33      60 ..     670     697 ..     663     706 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0077
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                   ++ ++++s+  +p+g+lL  + +dg+  l        + ++s ks   v+ l +
   KKY22619.1  52 FAHRKNITSIDLNPKGNLLLSVDEDGRAILTILPRRLAIFHFSFKSP--VSALAF 104
                  567899********************998888888888888888777..666665 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.18
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavay 57 
                  +s v++La+ p+gk +ava+
   KKY22619.1  96 KSPVSALAFAPSGKHFAVAI 115
                  6789**************97 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.1
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrllda 67 
                    ++sL W+ d +++  a +d + r+ + 
   KKY22619.1 152 DAIQSLVWSVDSRFFLSASKDLTARIWSL 180
                  5799*****************99999876 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0091
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtc 86 
                  ++ +v++ +++p  klL v++s+g   l++  +   +++l++++++ ++ 
   KKY22619.1 255 QNAKVNCASFHPISKLLTVGFSNGLFGLYELPDFANIQTLNISQSD-ISH 303
                  6789************************999999999999888875.665 PP

  == domain 5  score: 17.1 bits;  conditional E-value: 3.1e-06
  ANAPC4_WD40  32 l.......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek 82 
                          +++++  + + La++pdg+ +  + +dg++++ d +sg  + +++ +s+ 
   KKY22619.1 328 WqsesyilKQQSHMDSLNTLAYSPDGTRIITGADDGKIKIWDLSSGFHIATFTEHSSG 385
                  333333446788889999*******************************999988874 PP

  == domain 6  score: 6.9 bits;  conditional E-value: 0.0047
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  ++++s v+s +++++g++L  a  dg+vr  d+  
   KKY22619.1 380 TEHSSGVTSCCYSKKGNVLFTASLDGSVRAWDMLR 414
                  577899***********************988765 PP

  == domain 7  score: 11.1 bits;  conditional E-value: 0.00023
  ANAPC4_WD40  30 wtl.......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkv 72 
                  w++       + +++++ ++sLa+ pdg+ L+ +  d ++rl ++ + + 
   KKY22619.1 454 WSVqtgqlldQLSGHEGPISSLAFTPDGQTLVSGSWDYTIRLWSIFQRTQ 503
                  555555555555788999************************99876655 PP

  == domain 8  score: 4.2 bits;  conditional E-value: 0.034
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkv 72 
                   + +sev s++ +pd + La ++ dg++ +  +++g+ 
   KKY22619.1 508 LQLQSEVLSVSVRPDSSQLAASTLDGQLTFWTISTGTQ 545
                  46789************************999999875 PP

  == domain 9  score: 4.9 bits;  conditional E-value: 0.02
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                  ++++++++ +s+ ++ dg+ L  a +   + l+ +++ +++++++v+
   KKY22619.1 568 ANNSSNKSFSSITYSADGSCLLAAGQSKYICLYAVSTLTLLKKFTVS 614
                  5677888999******************************9999876 PP

  == domain 10  score: 0.4 bits;  conditional E-value: 0.51
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdg 60 
                  ++++++ +v+++++ p g+ ++ a  +g
   KKY22619.1 670 KQKHPEVRVTNVEFAPTGRSFCAASTEG 697
                  56778899**************999887 PP

>> Utp12  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0     8e-21   1.3e-17       1     106 [.     745     863 ..     745     864 .. 0.93

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 8e-21
                 HHHHHHH.HHHSS-TTTHHHHHHCS-CTCHHHHHHHHHHHH.HTTTTHHHHHHHHHHHHHHHHHHHHHS...............H.HHHHHHHHHHHHH CS
       Utp12   1 ndeelleevlekippsdirltvlrLpssyvlkLLeflaerlaeksphlelllrwlkallrvHgsylvas...............psdlvpaLrslqksl 84 
                 n+ +l+++v+ +ip+++i+++ +++  +y+++LL+f+ + + e s+hlel+l w+k+ll+ Hg++++ s                 +  ++Lr+l++ +
  KKY22619.1 745 NEISLIRKVYLSIPYNLIDTISRDIHHVYLTRLLRFIGTEM-ETSRHLELHLLWCKSLLSWHGRFIKDSstgivtgsgtggvgtG-EWAEVLRRLKRGI 841
                 67789**********************************77.*************************888999999999998643.5778********* PP

                 HHHHHHHHHHHHHHHHHHHHHH CS
       Utp12  85 rerlktlskllglnlgrLdyll 106
                 +  +kt++++++ nl  +d+ll
  KKY22619.1 842 DGTAKTVRRIAEGNLENVDFLL 863
                 *******************997 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.27   4.4e+02     111     211 ..     123     219 ..     108     249 .. 0.72
   2 !   12.7   0.0   2.7e-05     0.044     165     215 ..     318     369 ..     308     373 .. 0.87
   3 !    7.6   0.0     0.001       1.7     184     216 ..     379     412 ..     370     420 .. 0.85
   4 !    6.9   0.0    0.0016       2.7     184     221 ..     465     503 ..     441     510 .. 0.78
   5 !    4.7   0.0    0.0075        12     187     218 ..     511     542 ..     506     549 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.27
    Ge1_WD40 111 eapietvvsesdrviWCPyipeedaeesdddeaskllvltrgdkaeiwsvdmiaskygsgelsveeieegllkieehsliveaafspdGtalatasedG 209
                 ++p +  ++++  v + P++ + +     + +a + lv++  +++ +   + +++  ++++l++ee  e ++   +   +  a fs++  ++ t s+dG
  KKY22619.1 123 KTPSTPDTNVNGEVDFAPFVLHREY--GGHFDAIQSLVWSVDSRFFLSASKDLTA--RIWSLDPEEGFEPTVLAGHRESVKAAWFSANQESIFTISQDG 217
                 5556666666777777777777764..3456677777888777776666655554..467788888777777777777888999999999999999999 PP

    Ge1_WD40 210 ev 211
                  +
  KKY22619.1 218 AL 219
                 76 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.7e-05
    Ge1_WD40 165 skygsgelsveeieegllkieehs.liveaafspdGtalatasedGevkffq 215
                 sk+g+  +   + e+ +lk ++h   + + a+spdGt + t + dG++k + 
  KKY22619.1 318 SKHGQLLVWEWQSESYILKQQSHMdSLNTLAYSPDGTRIITGADDGKIKIWD 369
                 67777777778888888999999769999********************997 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.001
    Ge1_WD40 184 ieehs.liveaafspdGtalatasedGevkffqv 216
                 ++ehs  +++  +s  G +l tas dG v+ + +
  KKY22619.1 379 FTEHSsGVTSCCYSKKGNVLFTASLDGSVRAWDM 412
                 5666548***********************9976 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0016
    Ge1_WD40 184 ieehs.liveaafspdGtalatasedGevkffqvylede 221
                 ++ h   i++ af+pdG +l   s d +++++ +++  +
  KKY22619.1 465 LSGHEgPISSLAFTPDGQTLVSGSWDYTIRLWSIFQRTQ 503
                 55554479999************************9765 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.0075
    Ge1_WD40 187 hsliveaafspdGtalatasedGevkffqvyl 218
                 +s++ + ++ pd   la+++ dG++ f+ +  
  KKY22619.1 511 QSEVLSVSVRPDSSQLAASTLDGQLTFWTIST 542
                 5788899999******************9965 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.1     5e+03     122     158 ..      35      70 ..      19      73 .. 0.47
   2 ?   -2.4   0.0       2.3   3.8e+03      58      79 ..      95     116 ..      87     120 .. 0.76
   3 ?   -2.6   0.0       2.7   4.3e+03     122     163 ..     131     171 ..     130     178 .. 0.61
   4 ?    2.4   0.0     0.076   1.2e+02      92     158 ..     248     313 ..     220     323 .. 0.73
   5 !   14.8   0.0   1.2e-05     0.019     100     163 ..     341     403 ..     329     412 .. 0.81
   6 ?    2.1   0.0     0.095   1.6e+02     105     160 ..     431     486 ..     417     499 .. 0.83
   7 ?   -0.7   0.0      0.68   1.1e+03     143     163 ..     675     695 ..     666     700 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.1
                 SSS-EEEEEETT..TTEEEEEEE-TT--EEEE-TTSSEE CS
       eIF2A 122 nlaGeleiwdvk..kkkkiakaeaanatlvewspdgryv 158
                 nl   +++++ +  +  ++  a+ +n t+++ +p+g+++
  KKY22619.1  35 NL---VSVFNLTtnSNYTLPFAHRKNITSIDLNPKGNLL 70 
                 44...4444444212222333444555555555555544 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.3
                 SSS.EEEEEE-TTSS-EEEEES CS
       eIF2A  58 kegpihdvaWspkskefaviyG 79 
                  + p+ ++a  p++k+fav  G
  KKY22619.1  95 FKSPVSALAFAPSGKHFAVAIG 116
                 5678888888899999988777 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.7
                 SSS-EEEEEETT.TTEEEEEEE-TT--EEEE-TTSSEEEEEE- CS
       eIF2A 122 nlaGeleiwdvk.kkkkiakaeaanatlvewspdgryvlTatt 163
                 n++Ge+++     +++   +++a ++  + ws d+r++l a+ 
  KKY22619.1 131 NVNGEVDFAPFVlHREYGGHFDAIQS--LVWSVDSRFFLSASK 171
                 56666666555534444444444443..459999999998875 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.076
                 CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--EEEE-TTSSEE CS
       eIF2A  92 vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanatlvewspdgryv 158
                 v++ + l+++k N+  f+p  kl+ ++    l G  e+ d  ++++++   +++ +++  + +g+++
  KKY22619.1 248 VQKDYFLQNAKVNCASFHPISKLLTVGFSNGLFGLYELPDFANIQTLNIS-QSDISHIATNKTGEWL 313
                 5555668999************9988666667788888888877777544.4556677777777765 PP

  == domain 5  score: 14.8 bits;  conditional E-value: 1.2e-05
                 EES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT-..-EEEE-TTSSEEEEEE- CS
       eIF2A 100 eqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaana..tlvewspdgryvlTatt 163
                  ++ Nt+ +sp g+ ++++      G+++iwd ++  +ia++ +  +  t++ +s +g+ + Ta+ 
  KKY22619.1 341 MDSLNTLAYSPDGTRIITGA---DDGKIKIWDLSSGFHIATFTEHSSgvTSCCYSKKGNVLFTASL 403
                 5678***********99864...57*********88888887655433389*************86 PP

  == domain 6  score: 2.1 bits;  conditional E-value: 0.095
                 EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT..--EEEE-TTSSEEEE CS
       eIF2A 105 tiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaan..atlvewspdgryvlT 160
                 ++  +p+g++v+ + + ++  ++ +w v++ + + ++   +   +++ + pdg+ ++ 
  KKY22619.1 431 SVAIDPSGEVVCASSLDSF--DIHVWSVQTGQLLDQLSGHEgpISSLAFTPDGQTLVS 486
                 577899*************..9*******9998888765441268899*****99886 PP

  == domain 7  score: -0.7 bits;  conditional E-value: 0.68
                 -TT--EEEE-TTSSEEEEEE- CS
       eIF2A 143 aanatlvewspdgryvlTatt 163
                 +   t ve+ p+gr +  a+t
  KKY22619.1 675 EVRVTNVEFAPTGRSFCAAST 695
                 456799**********99998 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.6   4.3e+03     219     260 ..      86     126 ..      66     129 .. 0.68
   2 !    7.9   0.0     0.001       1.7     220     260 ..     332     372 ..     255     387 .. 0.79
   3 !    7.9   0.0    0.0011       1.7     223     262 ..     505     544 ..     473     554 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.6
      Nbas_N 219 lklysrkaeekdgvfkmslspdgtllavihfsgklsiwdips 260
                  +l   + + k  v  ++++p g  +av  +  k+ +w+ ps
  KKY22619.1  86 RRLAIFHFSFKSPVSALAFAPSGKHFAV-AIGRKIQVWKTPS 126
                 5555555555666677777888877765.4677888888887 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.001
      Nbas_N 220 klysrkaeekdgvfkmslspdgtllavihfsgklsiwdips 260
                  +  ++++  d +  ++ spdgt++ +    gk+ iwd+ s
  KKY22619.1 332 SYILKQQSHMDSLNTLAYSPDGTRIITGADDGKIKIWDLSS 372
                 4556788889999*************************988 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0011
      Nbas_N 223 srkaeekdgvfkmslspdgtllavihfsgklsiwdipslk 262
                 s + + +  v+ +s+ pd + la+  + g+l+ w+i +  
  KKY22619.1 505 SEPLQLQSEVLSVSVRPDSSQLAASTLDGQLTFWTISTGT 544
                 5556778899*************************98655 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.84   1.4e+03       7      65 ..     158     219 ..     153     227 .. 0.80
   2 !    4.9   0.0    0.0086        14       5      86 ..     303     387 ..     299     393 .. 0.63
   3 !   10.3   0.0   0.00019      0.31       5      70 ..     346     412 ..     342     421 .. 0.86
   4 ?    1.3   0.0      0.11   1.7e+02       3      85 ..     472     555 ..     470     564 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.84
   WD40_like   7 diskkgslilyGgkddkctvlklesle..svsivesfedSvifvkllddd.lilvvtlDGti 65 
                   s ++ ++l  +kd ++++ +l+ +e  + +++++ ++Sv  + +  ++  i   + DG++
  KKY22619.1 158 VWSVDSRFFLSASKDLTARIWSLDPEEgfEPTVLAGHRESVKAAWFSANQeSIFTISQDGAL 219
                 5677889999999999999999875542277999999***9999998776589999999998 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0086
   WD40_like   5 sidiskkgslilyGgkdd.kctvlkleslesvsivesfedSvifvkll.dddlilvvtlDGtillslleneeeven.ekieedis 86 
                  i  +k g+ +++G+ ++ ++ v + +s+  +   +s  dS+       d+  i+ ++ DG+i   +l+ ++++ + ++    ++
  KKY22619.1 303 HIATNKTGEWLAFGSSKHgQLLVWEWQSESYILKQQSHMDSLNTLAYSpDGTRIITGADDGKIKIWDLSSGFHIATfTEHSSGVT 387
                 6777888888888864442777788888888888888888876655541445777778888887777777775543134444444 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00019
   WD40_like   5 sidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkll.dddlilvvtlDGtillsll 70 
                 ++ +s++g+ i+ G++d k+++ +l s+  +  +++ +  v  +    +++++  ++lDG +   ++
  KKY22619.1 346 TLAYSPDGTRIITGADDGKIKIWDLSSGFHIATFTEHSSGVTSCCYSkKGNVLFTASLDGSVRAWDM 412
                 67899*********************************9998776551678999******9966555 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.11
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlDGtillslleneeevenekieedi 85 
                 i s+ + ++g+ ++ G+ d ++++ ++ + ++vs   +++  v+ v +  d  ++   tlDG+++  +++ + + +  +   di
  KKY22619.1 472 ISSLAFTPDGQTLVSGSWDYTIRLWSIFQRTQVSEPLQLQSEVLSVSVRPDSsQLAASTLDGQLTFWTISTGTQSSVLDGRRDI 555
                 668889999***********************************999998883555679*****88888877755555555555 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.22   3.6e+02      15      23 ..      21      29 ..      18      30 .. 0.84
   2 ?   -2.6   0.0       3.5   5.8e+03      20      36 ..     310     325 ..     309     326 .. 0.80
   3 ?    3.9   0.0     0.033        54      15      24 ..     348     357 ..     346     357 .. 0.89
   4 ?    5.5   0.1     0.011        17       8      24 ..     469     485 ..     464     493 .. 0.86
   5 ?   -0.8   0.0         1   1.6e+03       8      21 ..     573     586 ..     568     588 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.22
                EE-TTSSEE CS
        PD40 15 sfSPDGkrl 23
                 f+PDG++l
  KKY22619.1 21 VFTPDGQSL 29
                69*****98 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.5
                 SSEEEEEEECT.TCEEE CS
        PD40  20 GkrlaFsSdRgsGkpdI 36 
                 G +laF S+++ G+  +
  KKY22619.1 310 GEWLAFGSSKH-GQLLV 325
                 88****99999.87655 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.033
                 EE-TTSSEEE CS
        PD40  15 sfSPDGkrla 24 
                 ++SPDG+r++
  KKY22619.1 348 AYSPDGTRII 357
                 79******96 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.011
                 SS.EEEEEE-TTSSEEE CS
        PD40   8 pgnegaPsfSPDGkrla 24 
                 +g++ + +f+PDG++l+
  KKY22619.1 469 EGPISSLAFTPDGQTLV 485
                 677778899****9996 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 1
                 SS.EEEEEE-TTSS CS
        PD40   8 pgnegaPsfSPDGk 21 
                 ++   ++++S DG+
  KKY22619.1 573 NKSFSSITYSADGS 586
                 44667899****96 PP

>> Tail_spike_N  Tail spike TSP1/Gp66 receptor binding N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   1.9e-05     0.031      35      68 ..     799     833 ..     787     834 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.9e-05
  Tail_spike_N  35 keyyvWtGafPKvVpag.StPesTGGvgagaWvsv 68 
                   k+ ++W G f K+   g  t + TGGvg+g W++v
    KKY22619.1 799 KSLLSWHGRFIKDSSTGiVTGSGTGGVGTGEWAEV 833
                   55699********9998469999*********987 PP

>> DUF5074  Domain of unknown function (DUF5074)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.57   9.3e+02      16      59 ..     176     220 ..     158     232 .. 0.70
   2 ?   -1.8   0.0       1.9   3.1e+03      17      75 ..     291     349 ..     288     364 .. 0.69
   3 ?    3.9   0.0     0.032        52      46      81 ..     386     422 ..     360     431 .. 0.83
   4 ?    5.6   0.0    0.0094        15      27      59 ..     668     700 ..     661     733 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.57
     DUF5074  16 kLvkinpktlevktvelpe.lsiesswyawtptslcasttenaLY 59 
                 ++  ++p++  + tv   +  s++ +w++++++s+   +++ aL+
  KKY22619.1 176 RIWSLDPEEGFEPTVLAGHrESVKAAWFSANQESIFTISQDGALF 220
                 566677765444444333347999999999999877666777776 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.9
     DUF5074  17 LvkinpktlevktvelpelsiesswyawtptslcasttenaLYfiggsswfsgkkiyky 75 
                 +  +n ++ +++++++++++   + ++ ++++l     +   Y+ +++s + + + + y
  KKY22619.1 291 IQTLNISQSDISHIATNKTGEWLAFGSSKHGQLLVWEWQSESYILKQQSHMDSLNTLAY 349
                 55566666666666666666666667777888888888888888888877777777777 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.032
     DUF5074  46 ptslcasttenaLYfiggsswfsgkkiyky.didtet 81 
                  ts c s++ n+L+ ++ + ++ + ++++y +++t t
  KKY22619.1 386 VTSCCYSKKGNVLFTASLDGSVRAWDMLRYrNFRTFT 422
                 5789***************99*********7777655 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.0094
     DUF5074  27 vktvelpelsiesswyawtptslcasttenaLY 59 
                 + + + pe+ +++ ++a t +s+ca++te  L 
  KKY22619.1 668 SRKQKHPEVRVTNVEFAPTGRSFCAASTEGLLI 700
                 566788999****************99998763 PP

>> DUF1513  Protein of unknown function (DUF1513)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.038        62     219     272 ..     301     356 ..     289     372 .. 0.73
   2 ?    5.2   0.0    0.0056       9.2     220     257 ..     430     467 ..     417     506 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.038
     DUF1513 219 igsvavdsegrlvavtsPrgnlvavwdlasgell..eeaaladaagvaaaksgflv 272
                 i  +a++++g+++a  s + +++ vw+ +s++ +  ++ ++     +a  ++g  +
  KKY22619.1 301 ISHIATNKTGEWLAFGSSKHGQLLVWEWQSESYIlkQQSHMDSLNTLAYSPDGTRI 356
                 5689**************99999999777766551144455556666666666544 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0056
     DUF1513 220 gsvavdsegrlvavtsPrgnlvavwdlasgelleeaal 257
                  sva+d +g++v+++s     ++vw+ ++g+ll + + 
  KKY22619.1 430 SSVAIDPSGEVVCASSLDSFDIHVWSVQTGQLLDQLSG 467
                 69*****************************9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (913 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 5752.78
//
Query:       KKY22620.1  [L=212]
Description: putative endosomal cargo receptor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-45  155.6   0.3    1.5e-45  155.4   0.3    1.0  1  EMP24_GP25L  emp24/gp25L/p24 family/GOLD
  ------ inclusion threshold ------
      0.081   13.1   0.0        0.2   11.8   0.0    1.6  1  IrmA         interleukin receptor mimic protein A


Domain annotation for each model (and alignments):
>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.4   0.3   1.7e-49   1.5e-45       1     182 []      22     205 ..      22     205 .. 0.93

  Alignments for each domain:
  == domain 1  score: 155.4 bits;  conditional E-value: 1.7e-49
  EMP24_GP25L   1 altfklpageekCfyeelkk.gtlltgsyqvtdggaaldvdlsvkdpdgngerlvkkkdresegdfsftakesgeykvCfdnsfstksskkvsfdiev 97 
                  alt+kl+a+e+ Cf+ + +  g+++++++ v++gg ++dvd+ v+ p +  ++++++ +++++gdf ft ++ g+y++Cf+n++st+++k+v+f+i +
   KKY22620.1  22 ALTYKLDANEKACFFANNPTaGAKIAFYFAVQSGG-SFDVDYLVTAPGD--KIVMEE-HKQRQGDFVFTGQSVGDYSFCFSNEMSTFAEKMVDFEIAI 115
                  699**************9999**************.9********6666..666666.888888********************************** PP

  EMP24_GP25L  98 gseasd.....ykdsakkekletleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavlqvyyLkrfFk 182
                  ++++ +     +k+  + e+ ++le+++ k++ +l+ i r qky r+re+r+  t+ st++r++++s+++++++v++a+lqv++++ fF+
   KKY22620.1 116 ENDETNratlpSKAGTPPEQTTQLEESILKIQGQLSTISRMQKYFRTRENRNFSTVRSTERRIFNFSLIEVAMMVGMAGLQVLVVRFFFQ 205
                  877666777766667779***********************************************************************7 PP

>> IrmA  interleukin receptor mimic protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.2e-05       0.2       4      45 ..      79     120 ..      77     128 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.2e-05
        IrmA   4 rntDtvlapqgiCayqFrldnggepfdpltvelqlkdkkgnk 45 
                 r+ D v+++q +  y F + n++  f +  v+ ++   ++++
  KKY22620.1  79 RQGDFVFTGQSVGDYSFCFSNEMSTFAEKMVDFEIAIENDET 120
                 788***********************9988888877665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1412.22
//
Query:       KKY22621.1  [L=447]
Description: putative ap-1 complex subunit mu-1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-92  310.0   0.0    2.6e-92  308.9   0.0    1.5  2  Adap_comp_sub   Adaptor complexes medium subunit family
      6e-09   36.0   0.2      1e-08   35.2   0.2    1.4  1  Clat_adaptor_s  Clathrin adaptor complex small chain


Domain annotation for each model (and alignments):
>> Adap_comp_sub  Adaptor complexes medium subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       0.3   2.7e+03     217     242 ..     108     140 ..      85     150 .. 0.69
   2 !  308.9   0.0   2.9e-96   2.6e-92       1     263 [.     156     442 ..     156     443 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.3
                    ........EEEEEEEET--SS---EEEEEEE-- CS
  Adap_comp_sub 217 l.......vsveFkipgftaSgikVeslkveer 242
                    +         ++F +p++t S+i  e++  e++
     KKY22621.1 108 ViiyelldEMMDFGYPQTTESKILQEYITQESH 140
                    245555667899999999999998888877765 PP

  == domain 2  score: 308.9 bits;  conditional E-value: 2.9e-96
                    XXXXXXXXXXXX-EEEEEEEEEEEEEE-TTS-EEEEEEEEEEEEEE---TT-EEEEEE-SS-EE.......--S.SEESEEEEETT-B-TTHHHH- CS
  Adap_comp_sub   1 iswrrkgikykkneiyldviErvsvlvdkkGkilksevqGtiacksklsgmpelklgLndklnk.......ekk.ielddvsfHqcVnldkfeser 88 
                    +swr++gi+y+kne++ldviE++++lv+++G++l+se+ G i++k++lsgmpel+lgLndk ++       ++k +e++dv+fHqcV+l++fe++r
     KKY22621.1 156 VSWRSEGIRYRKNEVFLDVIESLNLLVSSTGNVLRSEILGAIKMKCYLSGMPELRLGLNDKVMFettgrstRGKaVEMEDVKFHQCVRLSRFENDR 251
                    69*******************************************************************876669********************* PP

                    EEEE---SEEEEEEEEEES--SS--SEEEEEEEEE-TTTSEEEEEEEEEE-S-TT-EEEEEEEEEE--TT-EEEEEEESSTT-EEEEETTEEEEEE CS
  Adap_comp_sub  89 visFiPpdgeftLmrYrlsannvklPfsvkpkvklsgdevrveielklkenfkkkltlenvkisiplpkevsnlaiktskGkakynpeenaleWti 184
                    +isFiPpdgef+Lm+Yrl +++vk+ ++v++ v+ +++ +r+e++lk+k++fk+++t++nv+isip+p +++ ++++t++G+++y pe++a++W+i
     KKY22621.1 252 TISFIPPDGEFELMSYRL-NTQVKPLIWVECVVESHSR-SRIEYMLKAKAQFKRRSTANNVEISIPVPDDADTPRFRTNIGTVHYAPEKSAIVWKI 345
                    ******************.****************999.********************************************************* PP

                    --EETT-EE..EEEEEEE-----------..---..................EEEEEEEET--SS---EEEEEEE--.-----EEEEEEEEEEEEE CS
  Adap_comp_sub 185 kklpggnesslsgeleleaesekkeenpr..dgkl.................vsveFkipgftaSgikVeslkveer.esykpfkwvryvtvsgey 260
                    k++ g++e+++++el l++ +  +e+                          ++v+F+ip+ft+Sgi+V++lk+ e+  +y + +wvry+t+sg++
     KKY22621.1 346 KQFGGNKEFLMRAELGLPSVKGDDEHGGGmtG--GfggsmggirgegkakrpINVKFEIPYFTTSGIQVRYLKIIEPkLQYPSLPWVRYITQSGDI 439
                    *********************99999887550..155555555666666778************************99****************** PP

                    EE- CS
  Adap_comp_sub 261 eir 263
                    ++r
     KKY22621.1 440 AVR 442
                    998 PP

>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.2   1.1e-12     1e-08       3     131 ..       3     131 ..       1     141 [. 0.77

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.1e-12
                     EEEEEE-TTS-EEEEEES...SSS-CHHH.HHHHHHHHHHHHTT-SSS-SEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHH CS
  Clat_adaptor_s   3 kaililnkkgkvrlakfy...tavddkkk.qklieevyelvsaRdsklsniveledlkviYkryasLYFvvivdeqeneliilelihlfvesLdk 93 
                      a++ l+ kgk++la+ y    ++++++k   l+ e  e  sa           e+++ +Y r  +LY +   + + n   il  +h+ ve++ +
      KKY22621.1   3 SALFFLDLKGKTLLARNYrgdIPMSAVEKfPVLLSEAEEESSAV----PPCFSDEGINYLYIRHNNLYLLALTKRNTNAAEILLFLHKIVEVFTE 93 
                     67888999999999999964445555555223333333333333....22334455889************************************ PP

                     HCTS-SHHHHHHCHHHHHHHHHCCEETTEES---HHHH CS
  Clat_adaptor_s  94 yfgnVceldlvfnfekvylildEivsgGeiletskkev 131
                     yf++ +e  +  nf  +y +ldE+++ G  + t+ k +
      KKY22621.1  94 YFKELEEESIRDNFVIIYELLDEMMDFGYPQTTESKIL 131
                     ****************************9887766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2881.09
//
Query:       KKY22622.1  [L=719]
Description: putative methylenetetrahydrofolate reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-97  325.4   0.0    4.9e-97  324.7   0.0    1.2  1  MTHFR     Methylenetetrahydrofolate reductase


Domain annotation for each model (and alignments):
>> MTHFR  Methylenetetrahydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.7   0.0  2.7e-101   4.9e-97      10     286 ..      15     310 ..       5     311 .. 0.93

  Alignments for each domain:
  == domain 1  score: 324.7 bits;  conditional E-value: 2.7e-101
                 S-EEEEEE---SSHHHHHHHHHHHHHHGGGG.-SEEEE---CCCTTHHHHHHHHHHHHHHH-S-EEEEEESTTS-HHHHHHHHHHHHHCT--EEEEE-- CS
       MTHFR  10 kalisfEffpPkteegernLleridrleevk.plfvdvTwgaggstaeltssiakviqqelgleailhlTctdaskeeldkalekakelGirnilALrG 107
                  + +s+EffpPkt+ g +nL  r++r++++  plfv++Twgaggsta++++++a+v q +lgl+++lhlTct+++++ +d+al++ak+lGirnilALrG
  KKY22622.1  15 ATYFSLEFFPPKTQAGFSNLQARLSRMAQALrPLFVTITWGAGGSTASKSLELAEVCQRQLGLTTCLHLTCTNMNRKLVDEALREAKDLGIRNILALRG 113
                 6789***********************99988******************************************************************* PP

                 S--TT-GG.C---S--...--SHHHHHHHHHHHHCGGSEEEEEE-TT--T.....T-S-HHHHHHHHHHHHHCT--EEEEEE-S-HHHHHHHHHHHHHC CS
       MTHFR 108 Dppkdedk.weekeee...fkyaldLvrlireeygdlfdigvaaYPevhp.....eaksleadlkylkeKvdaGAdfiitQlffdvdkflkfveqvrea 197
                 Dpp+ e+  ++e+e+    f+ a+dLvr+ir++ gd+f++gva+YPe+h+     e++s+e+dl +l eK +aGA+fi+tQl +d+ ++ k+++++r++
  KKY22622.1 114 DPPRSEEYnLDEEEDSnkdFTWAVDLVRYIRKNHGDYFCVGVAGYPEGHSdeshpEHQSVEHDLPFLVEKTSAGANFIMTQLSYDIYAYSKYEQTLRSH 212
                 ****998755444432556***************************8887777779*****************************************99 PP

                 T-....SS-EEEEE---SSHHHHHHHHHHHT----HHHHCCCTCHCT-HHHHHHHHHHHHHHHHHHHHHCT.....--EEEEE-TT--HHHHHHHHHC CS
       MTHFR 198 gi....dipiipgimpiksykslkrlaklskvkiPqelldrleeikdddeavkkigielavemvkkllaeg.....vkglHlytlnkekaileileql 286
                  +    +ipi+pg+mpi+sy+ lkr++kls++k+P+++l+r+e++k ddeavk++g+++  e+v ++ +        +glH+ytln+ek+++ ile+ 
  KKY22622.1 213 PSgvfkTIPILPGLMPIQSYQVLKRVTKLSHAKVPAKILERVEKVKTDDEAVKSVGVDILSELVTEIRNLPsppslPRGLHFYTLNLEKSVAYILERC 310
                 8777999********************************************************9998775555665679****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 5225.33
//
Query:       KKY22623.1  [L=172]
Description: hypothetical protein UCRPC4_g03240 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   12.2   0.1       0.29   11.3   0.1    1.4  1  CheX      Chemotaxis phosphatase CheX


Domain annotation for each model (and alignments):
>> CheX  Chemotaxis phosphatase CheX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   1.6e-05      0.29      30      77 ..     115     164 ..     102     171 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.6e-05
        CheX  30 a.l.gedeeeieedvndavgEltNmiaGnaksklgeevklspPlvisgke 77 
                 + l +e +e+++e++ +++  ++N++ Gn+ +   e+++  +Plv++ ++
  KKY22623.1 115 EdLaDEADESETEYAISVMSSTANTLPGNISTPRAENSRKRLPLVVEESD 164
                 34655666667***********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.51
# Mc/sec: 1012.25
//
Query:       KKY22624.1  [L=505]
Description: putative exopolyphosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-25   89.9   0.0    2.7e-25   89.2   0.0    1.4  1  DHHA2     DHHA2 domain
    4.8e-08   33.2   0.0    8.3e-08   32.4   0.0    1.4  1  DHH       DHH family
     0.0032   17.5   0.1     0.0086   16.1   0.1    1.7  1  SLAM      Signaling lymphocytic activation molecule (SLAM) pr


Domain annotation for each model (and alignments):
>> DHHA2  DHHA2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.0   4.5e-29   2.7e-25       3     142 ..     308     500 ..     306     501 .. 0.91

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 4.5e-29
                 HHHHHT-.STTS-HHHHTTTTEEEEE...........ETTEEEEEEEEEES-HHHHHT.THHH..........HHHHHHHHH.HHT-SEEEEEEE.... CS
       DHHA2   3 lkkaksd.lsglsledllrrDyKeft..........geggvkvgiasvpvslsewleekrkge..........llaalekfaeerkldllvlmttfe.e 79 
                 ++++k+  l++l++e++l+rDyKe+t          ++++vk+gi+s  +++s  l++ ++            l   +++f ++++ld+ +lmt+++ +
  KKY22624.1 308 VSRSKETsLDNLTIEEILDRDYKEWTetssssssssSSKSVKIGISSSLKPISYLLQKSNE-NsnpdpnsptsLIPLIKSFSHSKSLDIHILMTAYTsP 405
                 56777744****************************999**************55555444.36******************9999************* PP

                 ..ETTTEEEEEE....STT.HHHHHT---BTEEET.............................................T---HHHHTHHHHHH CS
       DHHA2  80 egdirrelllaal.daaek.laealekaseeleLeewkeg..............................aewrrvykqgnvkasRKqvaPllre 142
                 + ++ re+ll+ l ++++k + e ++ +seel+L++w  +                               + + v++q+ +++sRKqv P++r+
  KKY22624.1 406 DSKFHREILLLPLtSQNSKfVSEFIHLHSEELGLQPWHFEqttttnafkerfqpfsslsssssssepkahDNVVYVFNQTALEKSRKQVGPMIRD 500
                 ***********97533334688999999999***************************************99*********************96 PP

>> DHH  DHH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   1.4e-11   8.3e-08       3      85 ..      51     241 ..      49     262 .. 0.71

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1.4e-11
                 EEE-ECSSSHHHHHHHHHHHH.............................................................................. CS
                 xxxxxxxxxxxxxxxxxxxxx.............................................................................. RF
         DHH   3 livghknpDtDsigSaialan.............................................................................. 23 
                 +++g  + D+Ds+ Sa++++                                                                               
  KKY22624.1  51 FVLGNPSADLDSFISAVVFSFaysrnhqrqcaplvnlfavpssdlwrlrpefgtalwfatqakdpssinqdkdevqdeekqilqsnmitihdlqhnedt 149
                 788999***********9999777777777777777777777776666666666666666666666666666666666666666666666555555555 PP

                 ....................CECS--TCGGCGCCH.HCCCSEEEEEEE-S---SS---SS--EEEE-SSS-HHHHHHHHHHH.........T CS
                 ....................xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........x RF
         DHH  24 ....................llvDhneksqavege.akeeaedviiiDHHrlgeefetlapilflnepvgstaeivaellee.........k 85 
                                     +lvDhn ++   +   + ++ + v +iDHH+ ++++   a   ++++ +gs+ ++v++ l++         +
  KKY22624.1 150 ktlfpttglpessnakplsvVLVDHNAPAIPNISSeYLSTLNLVGCIDHHEDESKVPCSASPRIIKTGIGSCTTLVVQHLRDanlwpfpdtN 241
                 555555555555555555555********98776548999999*********99888888888999************99886666665552 PP

>> SLAM  Signaling lymphocytic activation molecule (SLAM) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.4e-06    0.0086      45     106 ..     381     440 ..     375     444 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.4e-06
        SLAM  45 LpLtsegisksmnksihilvtvaespessvkkkivsldlsegsspryledgYkfhlenlsLe 106
                 +pL++   s+s +  ihil+t  +sp+s++++ i  l l+ ++s +++ +  + h+e+l L+
  KKY22624.1 381 IPLIK-SFSHSKSLDIHILMTAYTSPDSKFHREILLLPLTSQNS-KFVSEFIHLHSEELGLQ 440
                 56654.455566667**********************9988765.7899********99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3546.94
//
Query:       KKY22625.1  [L=355]
Description: hypothetical protein UCRPC4_g03243 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-10   37.8   0.0    7.1e-09   34.9   0.0    2.0  2  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0     4e-13   7.1e-09      26     171 ..       4     139 ..       1     156 [. 0.93
   2 ?    0.6   0.0     0.011     2e+02     312     346 ..     275     309 ..     224     313 .. 0.82

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 4e-13
  Fungal_trans_2  26 kvllplalsnkallhallalsafhlqskgpkdslereakrykslalkelqealaelsstlsrnekykdiLaaiLllcsieissgdvsdwrvhLea 120
                     +vllp+a+s++al+h  +  +a++ ++  ++   ++ +++ ++++l  l +++    ++++     +++++a ++   ++   g  ++ r h ++
      KKY22625.1   4 SVLLPIAMSHPALCHGAIVYAAAQIANIRGDVTPSKADLQVYNRGLHSLHQSMLQQPNRFK-----DTLIIAAIAAAGFDLTYGRADELRRHVDG 93 
                     79***********************98888888899*************************.....9999999********************** PP

  Fungal_trans_2 121 atsliksrggskasssslsskarfllrifayldilssttlgrgpsfpseey 171
                       ++iks gg+     +      +  ++++++d +++++l+r+p+ +  ++
      KKY22625.1  94 IANIIKSIGGL-----QYLGLGGLAAHLVLWIDFFAAIMLNRQPLYSIPSR 139
                     ***********.....7888889999*****************99887766 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.011
  Fungal_trans_2 312 LlWplFiaGceavdeddRdfvrrrleeleqsrlgn 346
                     L+W lF aG+   d++  +++++  +++  + +g+
      KKY22625.1 275 LQWVLFGAGSIMNDRNGSKWYQNVARQTLLQQYGS 309
                     67*************99999999988887666765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 2165.39
//
Query:       KKY22626.1  [L=585]
Description: putative pyruvate decarboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-28  100.0   0.0    1.7e-28   99.4   0.0    1.3  1  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    2.5e-18   66.1   0.0    9.2e-18   64.3   0.0    1.9  1  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
    6.5e-12   45.5   0.3    3.6e-10   39.8   0.1    2.3  2  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   0.0   2.9e-32   1.7e-28       2     168 ..       8     178 ..       7     182 .. 0.93

  Alignments for each domain:
  == domain 1  score: 99.4 bits;  conditional E-value: 2.9e-32
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   +v+e+l+++ k+lgve++fgvpG+ +l+lld ++   g+ +    +E +a++aAdgyar++g +g++++t gpG ++al+a+ + + +++P+++++g
    KKY22626.1   8 KVGEYLFHRVKELGVESIFGVPGDYELALLDLVEPC-GLSWKGNANELVAGYAADGYARVKG-VGCLITTFGPGELSALNAISGSYAEKLPIIHIVG 102
                   79*******************************999.7**********************87.********************************** PP

                   E--CCCHH.....S..TC--T..-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EE CS
  TPP_enzyme_N  99 drptslrg.....qgvlqqel..dqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleev 168
                    ++ + +      +++l +       ++ +++t + + +t+ +++ ++++r + +a  + ++Pvy+ +p d+ ++ +
    KKY22626.1 103 YPAMQAITgkmtiHHTLGNGNytAYHEMSKHITCADTVLTDLSTVTSEIDRVLNAA-IQHSQPVYIGVPGDIGQAVI 178
                   ****99999888766666544778999999**************************.**************987755 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   1.5e-21   9.2e-18       9     123 ..     211     326 ..     204     341 .. 0.84

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 1.5e-21
                   HH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEE.ESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTTTTTTTT- CS
  TPP_enzyme_M   9 kaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylg.mlglhgskaanealeeaDlvlalGarfddirttgsepefapea 104
                   ++ +rpv +++ gv rs+  e + +++ek++iP+v+t m kg+i+e+h l+ g + gl  +k+++ +++++D+++ +G   +d +t g e+++  + 
    KKY22626.1 211 SSIQRPVAIIDAGVLRSKSLEGVMAFVEKYNIPFVETSMSKGAINERHNLFGGhYPGLGTNKETRTLIKDSDCIFWFGPFINDLNTPGAESDIRGK- 306
                   5679*************************************************9*****************************9998877765443. PP

                   EEEEEESSCCCCTT.CC--S CS
  TPP_enzyme_M 105 kiihididpaeigk.nyqvd 123
                    ++ ++  + ei+   yqvd
    KKY22626.1 307 VVMMFHRTHIEIDGqEYQVD 326
                   45555666666643033444 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.0    0.0086        52      62     152 ..      84     168 ..      77     169 .. 0.67
   2 !   39.8   0.1     6e-14   3.6e-10      16      91 ..     401     484 ..     389     529 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0086
                   GGGHHHHHHTT-SEEEEEEE-SBCCCHHHH..HHHHTCCTTTTSBB.BS----HHHHHHHTTSEEE.EESSH.HHHHHHHHHHHHCSSSEEEEE CS
  TPP_enzyme_C  62 lqelatavrrnlpitvvvlnNegygmtggq..qepfggkrksgpagkdlkpvdfaklaealGakga.rvekadveeleealkealekkgpalie 152
                   l++++ +  ++lpi+++v   ++ + tg+   ++  g++++++ +   +++ ++   a  +        +++  +e++++l +a+++ +p++i 
    KKY22626.1  84 LNAISGSYAEKLPIIHIVGYPAMQAITGKMtiHHTLGNGNYTAYH---EMS-KHITCADTVL---TdLSTVT--SEIDRVLNAAIQHSQPVYIG 168
                   677778888899999999999999999998665566666665522...222.2333333332...2222355..89**************9985 PP

  == domain 2  score: 39.8 bits;  conditional E-value: 6e-14
                   SSSSEEEC..ETTTS-TTTHHHHHHHHHHH.....ST.TSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHH CS
  TPP_enzyme_C  16 krprsylt..sgglgtmGyglpaAiGakla.....kp.drevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggq 91 
                   + p ++++  ++++g++Gy+ +aA+G  +a      p +++ + ++G G+f+m+ q++    r+n +  ++++nN+gy   +  
    KKY22626.1 401 YFPENIIHitQKLWGSIGYATGAALGSFIAaneigPPkHKRNILFTGEGSFQMTAQAFGDYSRYNTNGYIFIINNSGYTIERAI 484
                   346665555588*****************65666434458**************************************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 3523.69
//
Query:       KKY22627.1  [L=143]
Description: hypothetical protein UCRPC4_g03245 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.095   12.3   0.0       0.11   12.1   0.0    1.1  1  SipA      SipA N-terminal domain


Domain annotation for each model (and alignments):
>> SipA  SipA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.1e-06      0.11     138     186 ..      91     139 ..      62     142 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.1e-06
                 HHHHHHHHCSS-S-HHHHCCHHHHHHHHHHHHHHHHHHHHHH------- CS
        SipA 138 ikscieaelglsldevtsskltdLvDkaakkafeaLrqrrkdlieerGf 186
                 i + + + lgl  d  ++skl++ +D++a k+f+ + + + d   ++G+
  KKY22627.1  91 IVDPVSSPLGLDRDAQSRSKLQQRIDAEAVKSFQTIPKSKVDRQSSNGY 139
                 67789999****************************9999998888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.47
# Mc/sec: 915.23
//
Query:       KKY22628.1  [L=139]
Description: putative histone h2a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-17   61.9   0.0    9.8e-17   61.5   0.0    1.1  1  Histone        Core histone H2A/H2B/H3/H4
    9.4e-13   47.7   0.1    2.1e-12   46.6   0.1    1.6  1  Histone_H2A_C  C-terminus of histone H2A
    3.3e-05   24.1   0.0    4.9e-05   23.5   0.0    1.3  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   1.6e-20   9.8e-17      50     131 .]      20     101 ..      12     101 .. 0.93

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 1.6e-20
                 HHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHHHT CS
     Histone  50 eirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArrlr 131
                   +++ +++++ + ++p  Rv r +++++++++r+ a+a ++++++lE+l++e++e+A+++ak+ K ++itp+++qlA+r++
  KKY22628.1  20 SGKTQKSHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGD 101
                 5577888899999*******************************************************************75 PP

>> Histone_H2A_C  C-terminus of histone H2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.1   3.4e-16   2.1e-12       1      34 [.     102     134 ..     102     135 .. 0.97

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 3.4e-16
  Histone_H2A_C   1 EELnkLLggVTIAqGGVLPnIhkvLLpkktkkkk 34 
                    EEL++L++ +TIA GGVLP+I+ +LL k ++kkk
     KKY22628.1 102 EELDTLIR-ATIAFGGVLPHINRALLLKVEQKKK 134
                    9*******.***********************98 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   8.1e-09   4.9e-05       2      65 .]      34      98 ..      33      98 .. 0.96

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 8.1e-09
                   XXXHHHHHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF  2 eLPiarvkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65
                   ++P  rvk+ +k+  ++  ++   A ++++ ++e    e+++ A   +k+ k K i++ h++lA+
     KKY22628.1 34 QFPCGRVKRFLKNNtQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAI 98
                   69************888888*******************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1051.06
//
Query:       KKY22629.1  [L=317]
Description: putative r3h domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-05   22.8   0.0    0.00011   22.0   0.0    1.5  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
  ------ inclusion threshold ------
      0.047   13.9   0.0      0.074   13.3   0.0    1.3  1  RRM_2     RNA recognition motif 2


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.2e-08   0.00011       1      70 []     163     233 ..     163     233 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.2e-08
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 ++++n+p+ v +e+L   +s+ +        +   +g  +g af +F+s+++ +  ++a+n ++l+gr+l+
  KKY22629.1 163 IVIKNIPFAVRKEQLIGTMSEMNLPLPYAFNYHfDNGVFRGLAFANFTSPDETATVIRAMNLYELHGRKLR 233
                 78*******************99998888888889*********************************986 PP

>> RRM_2  RNA recognition motif 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.2e-06     0.074       2      66 ..     161     223 ..     160     233 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.2e-06
       RRM_2   2 ttlliknipnkytkkmllaaideknkg.tydflylpidfknkcnvgyafinlvepkkivafqkafn 66 
                 t+++iknip    k+ l+ ++ e n    y f y    f n    g af n+ +p+++ ++ +a+n
  KKY22629.1 161 TAIVIKNIPFAVRKEQLIGTMSEMNLPlPYAFNY---HFDNGVFRGLAFANFTSPDETATVIRAMN 223
                 789************9999999988652688876...79********************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2182.35
//
Query:       KKY22630.1  [L=753]
Description: putative heat shock transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-29  100.6   0.8    1.2e-28   99.6   0.8    1.6  1  HSF_DNA-bind  HSF-type DNA-binding
  ------ inclusion threshold ------
      0.064   13.7   0.0       0.15   12.5   0.0    1.6  1  Ets           Ets-domain
      0.076   13.2   0.1        0.2   11.8   0.1    1.7  1  RasGAP_C      RasGAP C-terminus
        9.6    5.8  12.9       0.56    9.8   7.0    2.0  2  DUF2968       Protein of unknown function (DUF2968)


Domain annotation for each model (and alignments):
>> HSF_DNA-bind  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.8   2.6e-32   1.2e-28       1      95 [.     143     245 ..     143     246 .. 0.87

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 2.6e-32
                   HHHHHHHHHCT...TTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE.....---SSB....TTB--TTSEEEEESS--XX CS
  HSF_DNA-bind   1 FlkkLyklled...eelisWsedgksfvvkdkeefakevlpkyfkhsnfssFvrqLnlYgFrk.....vkrkee....kkkkkskvweFshenFkrg 85 
                   F++kL ++l++   +eli+Ws+dgksf+v d++efak+++p++fkh+n++sFvrqLn+YgF+k          +    +++k+++ +e+sh++F+rg
    KKY22630.1 143 FVQKLSSFLDQsknTELIRWSDDGKSFIVLDEDEFAKTLIPELFKHNNYASFVRQLNMYGFHKkvglaD----NsmraSERKNKSPSEYSHDFFRRG 235
                   9********76666899**********************************************766542....13344666666777********** PP

                   XXXXXXXXXX CS
  HSF_DNA-bind  86 kpelLkkikr 95 
                   +pelL  i++
    KKY22630.1 236 HPELLWAIQK 245
                   ******9986 PP

>> Ets  Ets-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.4e-05      0.15       6      59 ..     147     198 ..     143     209 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.4e-05
         Ets   6 llelLedpskssiiaWtdkeegeFklvdpeevarlWgkrknkpkmnyeklsral 59 
                 l + L++++++++i+W d+ + +F ++d++e+a+    +  k + ny ++ r+l
  KKY22630.1 147 LSSFLDQSKNTELIRWSDD-GKSFIVLDEDEFAKTLIPELFK-HNNYASFVRQL 198
                 567899999********88.*************975444332.34555565655 PP

>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   4.5e-05       0.2      26      87 ..     302     363 ..     293     419 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.5e-05
    RasGAP_C  26 nyqellneIakdirnkgrlrekrkeElesleetlktLseknnylesqlesYkayienvleql 87 
                 n q+l +++++++r  + ++  + + ++ l++ ++tL ++   +++q    ++ i+ +l  l
  KKY22630.1 302 NGQQLAQMVQNELRIIRAQQAAIARTISELRQEHQTLASQAMTFQEQHTRHENSINAILTFL 363
                 669****************************************************9998766 PP

>> DUF2968  Protein of unknown function (DUF2968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.3       2.7   1.2e+04     149     160 ..     123     134 ..     108     145 .. 0.54
   2 ?    9.8   7.0   0.00013      0.56     119     172 ..     304     357 ..     301     361 .. 0.90

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 2.7
     DUF2968 149 eaaaLeaqreaa 160
                 +a+aLea++ea 
  KKY22630.1 123 QARALEAKKEAQ 134
                 333444333322 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00013
     DUF2968 119 earaerLqadlavarqQeqavaerQkqarkeaaaLeaqreaaqaqlralqrqir 172
                 ++ a+ +q++l++ r+Q++a+a+  +++r+e ++L++q    q+q ++ ++ i+
  KKY22630.1 304 QQLAQMVQNELRIIRAQQAAIARTISELRQEHQTLASQAMTFQEQHTRHENSIN 357
                 667899*************************************99887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       923  (0.0514808); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.53
# Mc/sec: 4250.99
//
Query:       KKY22631.1  [L=305]
Description: hypothetical protein UCRPC4_g03249 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2003.94
//
Query:       KKY22632.1  [L=113]
Description: hypothetical protein UCRPC4_g03250 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0034   17.6   0.0     0.0042   17.3   0.0    1.1  1  Phasin_2      Phasin protein
  ------ inclusion threshold ------
      0.094   12.3   0.2        0.1   12.2   0.2    1.2  1  PCIF1_WW      Phosphorylated CTD interacting factor 1 WW doma
       0.15   11.3   5.0       0.17   11.2   5.0    1.0  1  Peptidase_U4  Sporulation factor SpoIIGA


Domain annotation for each model (and alignments):
>> Phasin_2  Phasin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     7e-07    0.0042      21      87 ..       4      72 ..       1      79 [. 0.90

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7e-07
    Phasin_2 21 alegaeklaelqleaarasleeslaaakallsakd..pqellelqselaqpalekavayarklaelaak 87
                 l ++++l +  l++ +++le++++a+++++++ +  +q ++++ ++ +q+++  + +  +++++l++ 
  KKY22632.1  4 ILGSVKDLFTSILSVFKSLLETGFSAIESIFAIITsaLQTAFNIVASAFQTVFSVFGTLLKDIGQLFQG 72
                677899***************************6559*****************999999999999886 PP

>> PCIF1_WW  Phosphorylated CTD interacting factor 1 WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   1.7e-05       0.1      42      91 ..      28      77 ..       8     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.7e-05
    PCIF1_WW 42 alpeevfevLkkefgvsfecfAsPlncyfeqycsafpdtDayFGsvGsff 91
                +  e++f++++++++  f+  As + ++f+ +    +d+ + F ++ +f+
  KKY22632.1 28 SAIESIFAIITSALQTAFNIVASAFQTVFSVFGTLLKDIGQLFQGLIEFI 77
                55689**********************************99997766665 PP

>> Peptidase_U4  Sporulation factor SpoIIGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   5.0   2.8e-05      0.17      32     109 ..      18      93 ..       3     108 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.8e-05
  Peptidase_U4  32 klrlllaAllGalyvvlvlflpklesillsillkilvsllmv.liafg..pkslkeflkalllfylvsfllgGilfalsyl 109
                    ++ ll   + a+ +++++++      +l+++++i+ s++ + + +fg   k + +++++l+ f++++f++ G++++ + +
    KKY22632.1  18 VFKSLLETGFSAIESIFAIITS-----ALQTAFNIVASAFQTvFSVFGtlLKDIGQLFQGLIEFIFANFVMIGLVIGSFIA 93 
                   5566666677777766766664.....3444444444444331334441168999******************99876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.32s 00:00:00.80 Elapsed: 00:00:00.50
# Mc/sec: 685.37
//
Query:       KKY22633.1  [L=505]
Description: putative trna (adenine-n)-methyltransferase non-catalytic subunit trm6 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-91  304.7   0.0    7.4e-91  304.4   0.0    1.1  1  Gcd10p    Gcd10p family


Domain annotation for each model (and alignments):
>> Gcd10p  Gcd10p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.4   0.0   4.1e-95   7.4e-91      62     300 .]       5     307 ..       1     307 [. 0.96

  Alignments for each domain:
  == domain 1  score: 304.4 bits;  conditional E-value: 4.1e-95
      Gcd10p  62 srlrvvpaaeleaeslaeeeaeeeeeeee............arsnreiiddgarQkLtkeeIeeLKkegtsagkeiIaklleshtafdqKTaFSqeKYl 148
                 + lr+vpaael+a++l e+++ +++++++            +++nr+i+dd a+QkLt+eeIe+LK ++t+ag++iI+++l+shta+dqKTaFS++KY+
  KKY22633.1   5 YPLRIVPAAELHADALIEQSEVDAAANGDqatpegstpiddSKNNRNIVDDPASQKLTMEEIEALKGNSTGAGRDIISQILQSHTAIDQKTAFSLAKYT 103
                 569***************9999888888899******************************************************************** PP

      Gcd10p 149 krKkkKYlkrftvlpldvsllleyllekkdaqkilelreetlglllslanvhagg............ryLvvDdtgGLlvaalaeRmgi.......... 225
                 +rK+kKYl+rf++ pldv+ll+e++l+++da +i+elr+et++ll s+anvh+ g            r+LvvDdt+GL+vaa+ae++gi          
  KKY22633.1 104 LRKNKKYLRRFSIVPLDVPLLAEWMLTERDAVRIMELRNETISLLTSWANVHHDGsnpgstdyispgRWLVVDDTSGLMVAAVAEKLGIlhlpesesep 202
                 *************************************************************************************************** PP

      Gcd10p 226 ............................f.essakegtivliheneqpnlsllkyfnydaae..pehplkkhlktlswlqllepeedetyeeepeevse 293
                                             + ++s+++++i+++h+++qpnlsllk+fnyd ++  ++hpl ++lktlswlqll+pe+d+ty+e+p    +
  KKY22633.1 203 qdseapndenvppedspeskpkrkrhhqIaQMSSSTNSITVVHSASQPNLSLLKFFNYDPNDpsSNHPLYTNLKTLSWLQLLSPETDPTYHEPPY-FLP 300
                 ***************************966*********************************99**************************6665.555 PP

      Gcd10p 294 eelaelk 300
                 +e++++k
  KKY22633.1 301 SEVSTWK 307
                 5556776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3151.64
//
Query:       KKY22634.1  [L=1256]
Description: putative periplasmic beta-glucosidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-44  150.8   0.0    8.1e-44  150.0   0.0    1.4  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
    9.9e-40  136.4   0.0    2.7e-39  135.0   0.0    1.8  1  Pro_isomerase    Cyclophilin type peptidyl-prolyl cis-trans i
    7.7e-24   83.6   0.0    1.6e-23   82.6   0.0    1.6  1  Fn3-like         Fibronectin type III-like domain
    2.9e-18   66.3   0.0    6.6e-18   65.1   0.0    1.5  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai


Domain annotation for each model (and alignments):
>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.0   0.0   1.8e-47   8.1e-44       1     204 []     847    1116 ..     847    1116 .. 0.90

  Alignments for each domain:
  == domain 1  score: 150.0 bits;  conditional E-value: 1.8e-47
                       -EEEEEGSS--S-S-STEEEEEESGGGS....................SS-SS-BSSS----S---HHHHHHHHHHH............... CS
                       xxxxxxxxxxxxxxxxxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............. RF
  Glyco_hydro_3_C    1 iVLLkNennlLPLkkklkkiaviGpnad....................etlklGggsgtvtvsylvsplegirerles.............. 58  
                       +VLLkN+ + LPL  k k i ++G +a                     + l +G gsg  +++ylv+pl++i++r+ +              
       KKY22634.1  847 MVLLKND-GGLPL-DKPKYIGLFGAHAGpvmggpnqkldvqgsgptyqGHLATGSGSGLSSFPYLVTPLQAITARAIEdgsmiswilndtyt 936 
                       8******.99***.55679****************************999**************************778************* PP

                       .........................-HHHHHHHHHHHTSEEEEEEEES...SB-TTSCSGHHSSTTHHHHHHHHHHTTSSEEEEEEESSGG- CS
                       ........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C   59 ........................eegideaveaakeaDvavvvvgedpeiegEgvDrtdlalpeaqdelikavaaanknvvvvlqsggpva 126 
                                               ++++   ++ a+ a v +v++++    +gEg Drt+l    +qdel+++va+ ++n++v++++  +  
       KKY22634.1  937 atdytgvgssvgvdtaalaalqtgTSTTPSIENYANIATVSLVFLNAL---AGEGADRTELYNE-EQDELVNTVASYCNNTIVIINTIDVRL 1024
                       *********************998778888889999999999999999...*********8776.*************************** PP

                       -TTT.GTTTEEEEEE-S--GCCHHHHHHHHHTTSS---B--SS-EESSSGGG.........................S.-----S...ETTT CS
                       xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxx......xx.xxxxxx...xxxx RF
  Glyco_hydro_3_C  127 vepw.keenvkAilaawlpGqegGtaiadvLfGdvnPsGkLpvtfpksledlpd........dyyeekdt......yk.fegtpl...YpeG 199 
                       ++ w ++env+A+l+  l G+e+G++iad+L+GdvnPsG+Lp+t +k+ +d+++        d+     t      yk f+++++   Yp+G
       KKY22634.1 1025 IDHWiNHENVTAVLYGSLLGEESGHSIADILYGDVNPSGRLPFTLAKNQSDYNVgicltldcDF-----TegnyidYKsFQSRNItprYPFG 1111
                       **************************************************99665543222222.....2344556665555555666**** PP

                       T-BCH CS
                       xxxxx RF
  Glyco_hydro_3_C  200 lglsY 204 
                       +glsY
       KKY22634.1 1112 HGLSY 1116
                       ****9 PP

>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0   0.0     6e-43   2.7e-39       2     158 .]      15     185 ..      14     185 .. 0.86

  Alignments for each domain:
  == domain 1  score: 135.0 bits;  conditional E-value: 6e-43
  Pro_isomerase   2 vdietsskGrivieLfadkaPktvenFlklvkegfYdgttFhRvikgfmvqgGdptgkts........ageqekkgge...siraipdEit.sklk 85 
                    ++++t  +G+i + Lfa++aP +++nFl+++ +g+Yd+t+FhRv++gf++qgGdptg+++        a   e++++    ++ +++dE + +  +
     KKY22634.1  15 ATLHTT-AGPISFSLFAQQAPLACRNFLQHILDGYYDNTSFHRVVPGFVIQGGDPTGTGEggasiyedA---EFENDPvtgEKIEFHDELHtRLRF 106
                    578995.**************************************************999777774431...322222222337999***977777 PP

  Pro_isomerase  86 hkrGalamartg..kepnsagsqFfItlkeap.hldgkytvFGkVv.eGmdvvekiekvetde..erpkknvkivsaev 158
                    ++rG+l+ma++   + + s gsqFfItl+++  +ldgk+t+FG+V  eG+  v ki+++e  e  erp+ + k+++aev
     KKY22634.1 107 NRRGLLGMAKMTdaQGKGSYGSQFFITLADCRaELDGKCTMFGRVEgEGIYNVVKIADAELVEgtERPVWPAKVTRAEV 185
                    7********998888899************999*************************887777899999999999875 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0   3.5e-27   1.6e-23       2      70 ..    1177    1244 ..    1176    1245 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 3.5e-27
                  EEEEEEEESS-STTSBS-EEEEEEEEEE-TT-EEEEEEEEECGGG-EEETTTTEEE--SCEEEEEEESS CS
    Fn3-like    2 vvqlYvsdpessverpvkeLkgFekveLapGesktvtftldrkdlsvwdeekqkwvvepGeytvlvgts 70  
                  + qlY+s+p++ +++p+k+L+gFekveL  G++k+vtf+l rkdls+w+ ++ kw+v +G+y+v+vg+s
  KKY22634.1 1177 IPQLYLSFPPE-ADQPAKQLRGFEKVELDVGDTKDVTFQLRRKDLSYWNLDQRKWCVAEGRYRVFVGAS 1244
                  68********9.9******************************************************98 PP

>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   1.5e-21   6.6e-18      77     313 ..     582     802 ..     572     806 .. 0.84

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 1.5e-21
                    TTB---SSS---S-HHHHHHHT-HHHHHHHHHHHHHHHHHHT--EE---B--.---STTSSSGGGSS-SSHHHHHHHHHHHHHHHHHTT-EEEEEE CS
  Glyco_hydro_3  77 GlvqrlgegtlfPsalalaatssldlikelgriiakelralgididfaPvvd.vnrdprngigvrsFsedpelvaalaaamvkGlqgagvaatvKH 171
                    G+++       f +a ala ++++dl++e g++i++e    g ++  +P+   ++r p  g+  ++ ++d +l +   +   k+  ++gv++ +KH
     KKY22634.1 582 GIETAYD-VSAFSQASALAYSFDKDLMYEQGSAIGREFYLRGYQVVNGPTSGpLGRTPWSGRLGETLGQDSYLNGIAFSLLTKAFVDQGVIPGGKH 676
                    5554443.378999***********************************985499999999**************999999*************** PP

                    ETTGTT-SSETTTSE..E.B----HHHHHHTTHHHHHHHHHTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS---SEEEES-TTSHHHHCC CS
  Glyco_hydro_3 172 FpghGdgavdshkel..p.tvdhseeelrevdlvpfqaaieagvdsVMtaHvqfpaldgtpatgskklltdvLRkelGFdGvvvsDalamkeiadr 264
                    F      ++++++ l  p  ++ + ++l+e +++pf  a+++g++ VM a   +++++++    s++ll ++L++e+GF G v+ D          
     KKY22634.1 677 FLLN---EQETNRTLtpPySSNVNDKALHETYAAPFYDAVKNGMGGVMCA---MNSVNDSYSCESSDLLLQLLKTEIGFPGQVFADVD-------- 758
                    ***7...4454444411314667899************************...*******9999999999****************87........ PP

                    S-HHHHHHHHHHHT-SBEES-S---SGHHHHHHHHHTTSS-HHHHHHHH CS
  Glyco_hydro_3 265 ggkeeavvlaLkAGvDilLvpeertseikalkkavkeGeltearidesv 313
                       ++ +  +L+ G+D     ++ +  + ++++a+++G+ te+r+d+ +
     KKY22634.1 759 --GQRTALESLNNGLDYGS--SSLW-SSSTIEAAIANGSFTEERLDDMA 802
                    ..45667788888888753..3333.34778888888888888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.46
# Mc/sec: 8131.28
//
Query:       KKY22635.1  [L=351]
Description: putative glyoxylate reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-43  148.0   0.0    9.7e-30  103.2   0.0    2.1  2  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0     2e-15   3.6e-11       3      78 ..     109     185 ..     107     193 .. 0.87
   2 !  103.2   0.0   5.4e-34   9.7e-30      84     178 .]     218     314 ..     208     314 .. 0.90

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 2e-15
                   HHHHHHTTHHHHHHHHHTTCC.HTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHH CS
  2-Hacid_dh_C   3 lllallrrlaeadeevregew.ksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeel 78 
                     la+  +++ + e +++g+w + e++   ++  g ++Gi+G+G+IG++ ak+++a+gm ++ay+ +++++ e ++ 
    KKY22635.1 109 TFLAHQHEIPMYLEGQKRGDWmQPETDEDVEDSVGLRMGILGYGAIGRQCAKLATAMGMSIYAYNLRPRPTPESRRD 185
                   678999999************877788899999**********************************9988844443 PP

  == domain 2  score: 103.2 bits;  conditional E-value: 5.4e-34
                   SHHHHH.HH-SEEEE-S--STTTTTSBSHHHHHCSTT.TEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  84 sleell.aesDivslhlpltpetrhlinaeelakmkk.gailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   +l+e+l ++ Di+++++plt +t+++i +e+l++++k + +l N++RG++v++++L+ aL++ +i+gaalDv+++eplp+d++l++++nvi+tPH++
    KKY22635.1 218 NLKEFLsSDLDILVVCTPLTTATQGMIAKEQLELLRKkKTFLSNVGRGPIVNTNDLIHALNNDWIRGAALDVTDPEPLPKDHELWKAKNVIITPHVS 314
                   6666662468***********************9965166889****************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2591.82
//
Query:       KKY22636.1  [L=188]
Description: putative arp2 3 complex subunit arc18 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-76  256.0   0.0      2e-76  255.9   0.0    1.0  1  P21-Arc   ARP2/3 complex ARPC3 (21 kDa) subunit


Domain annotation for each model (and alignments):
>> P21-Arc  ARP2/3 complex ARPC3 (21 kDa) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.9   0.0   1.1e-80     2e-76       1     174 []       1     188 []       1     188 [] 0.99

  Alignments for each domain:
  == domain 1  score: 255.9 bits;  conditional E-value: 1.1e-80
     P21-Arc   1 mpayhssfneeeevrlvgnlallplktkvrgpapka..............deeeediidealelFranvlfrnfeikgeaDrvLiYlilfisecLkklk 85 
                 mpayhs f +e+ ++l+gn+++lpl+tk+rgpa++               d++++di+de+l+lFran++frnfeikg+aDr+LiY+ilf+secL k+k
  KKY22636.1   1 MPAYHSIFLNEQGAQLIGNFPVLPLRTKTRGPAYTLpqlpagtpdldidpDSDSYDILDEVLSLFRANTFFRNFEIKGPADRLLIYGILFLSECLGKVK 99 
                 9**********************************99************99************************************************ PP

     P21-Arc  86 kstskeeaekelatlalenfaiPgdagfpLnslyekpkskeeadllrqYlkqlrqelalrllervyeddekpskwWlafakrkFmnksL 174
                 ++++++eaek+l+++al++faiPgda fpLn+ +e+p++++ea+ lrqYl+q+rqela+rll+r+y+ ++ pskwWl+f+krkFm+ksL
  KKY22636.1 100 PTMQQREAEKALINTALDQFAIPGDATFPLNQAFEPPRDRQEAEFLRQYLSQVRQELAMRLLARLYAGGAGPSKWWLSFSKRKFMGKSL 188
                 *********************************************************************9*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.31s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1205.81
//
Query:       KKY22637.1  [L=403]
Description: putative dna replication factor c subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-16   60.9   0.0    5.7e-16   58.7   0.0    2.2  1  Rep_fac_C        Replication factor C C-terminal domain
    2.8e-16   60.1   0.1      7e-16   58.8   0.0    1.7  1  AAA              ATPase family associated with various cellul
      1e-12   48.1   0.0      8e-12   45.2   0.0    2.3  1  DNA_pol3_delta2  DNA polymerase III, delta subunit
    4.5e-09   36.5   0.0    8.6e-09   35.6   0.0    1.5  1  Rad17            Rad17 P-loop domain
    4.6e-07   30.1   0.1    2.1e-06   28.0   0.0    2.2  1  AAA_assoc_2      AAA C-terminal domain
    1.2e-06   28.4   0.0    2.6e-06   27.3   0.0    1.5  1  AAA_30           AAA domain
    4.3e-06   26.6   0.0      1e-05   25.4   0.0    1.5  1  DNA_pol3_delta   DNA polymerase III, delta subunit
      5e-06   27.0   0.0    6.3e-05   23.4   0.0    2.2  1  AAA_16           AAA ATPase domain
    9.3e-06   26.0   0.0    3.8e-05   24.0   0.0    2.0  1  AAA_22           AAA domain
      3e-05   23.9   0.1    0.00011   22.1   0.0    1.8  2  AAA_11           AAA domain
    4.3e-05   23.5   0.4    0.00028   20.9   0.1    2.7  1  AAA_5            AAA domain (dynein-related subfamily)
    4.3e-05   22.8   0.0    7.4e-05   22.0   0.0    1.3  1  DUF815           Protein of unknown function (DUF815)
    7.4e-05   22.5   0.0    0.00021   21.0   0.0    1.8  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00021   21.1   0.0     0.0004   20.1   0.0    1.3  1  AAA_24           AAA domain
    0.00032   21.0   0.1    0.00082   19.7   0.1    1.6  1  AAA_19           AAA domain
    0.00078   19.3   0.5     0.0036   17.2   0.1    2.3  1  AAA_3            ATPase family associated with various cellul
    0.00081   19.1   0.0     0.0016   18.1   0.0    1.4  1  Sigma54_activat  Sigma-54 interaction domain
     0.0012   18.9   0.0     0.0037   17.3   0.0    1.8  2  AAA_14           AAA domain
     0.0015   18.6   0.0       0.14   12.1   0.0    2.3  2  ResIII           Type III restriction enzyme, res subunit
     0.0018   17.8   0.0       0.31   10.5   0.0    2.3  2  PhoH             PhoH-like protein
     0.0051   16.6   0.0      0.031   14.1   0.0    2.1  2  DEAD             DEAD/DEAH box helicase
     0.0078   15.6   0.0      0.059   12.8   0.0    2.2  2  TniB             Bacterial TniB protein
  ------ inclusion threshold ------
      0.013   15.8   0.0      0.025   14.8   0.0    1.5  1  AAA_28           AAA domain
      0.014   14.9   0.0       0.03   13.8   0.0    1.5  1  AAA_7            P-loop containing dynein motor region
      0.017   15.6   0.0      0.038   14.5   0.0    1.7  1  AAA_18           AAA domain
      0.018   14.3   0.0      0.028   13.7   0.0    1.2  1  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.039   13.3   0.3       0.22   10.9   0.2    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.045   14.1   0.0       0.14   12.6   0.0    2.0  1  RNA_helicase     RNA helicase
      0.046   13.3   0.0       0.11   12.0   0.0    1.6  1  AAA_25           AAA domain
      0.051   13.5   0.0       0.11   12.4   0.0    1.5  1  NACHT            NACHT domain
      0.075   12.8   0.0        0.5   10.1   0.0    2.1  1  IstB_IS21        IstB-like ATP binding protein
      0.076   12.6   0.0       0.14   11.7   0.0    1.3  1  MiaE             tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)
        0.1   12.5   0.0       0.26   11.1   0.0    1.7  1  TK               Thymidine kinase
       0.12   12.3   0.0       0.18   11.7   0.0    1.3  1  ATPase_2         ATPase domain predominantly from Archaea
       0.12   12.9   0.0       0.23   11.9   0.0    1.5  1  ABC_tran         ABC transporter
       0.14   11.3   0.0       0.24   10.6   0.0    1.3  1  TIP49            TIP49 P-loop domain


Domain annotation for each model (and alignments):
>> Rep_fac_C  Replication factor C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   1.1e-18   5.7e-16       1      86 [.     298     383 ..     298     385 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 1.1e-18
                 --HHHHHHHHHHHHH.T-HHHHHHHHHHHHHHC---HHHHHHHHHHHGCCS..S-HHHHHHHHHHHHHHHHHHHCTH-HHHHHHHHH CS
   Rep_fac_C   1 phpteieeileacln.gdfeeaykklrellvekGysaediltqlhrvvkeqeelpeaqkleilellgeiekrlveGasehlqlsall 86 
                 php++i+ il+++l+  d++ + +++++l+ ++G++++dilt l + + +  e+++++++  le l+eie+rl+ G++e lq+ +++
  KKY22637.1 298 PHPEDIRMILNTILStPDVTSCLNTINTLKSQQGLALADILTALSEEMQTL-EVSAQTRITWLEGLAEIEFRLAGGGNEVLQTGGMV 383
                 8************99**********************************96.7*******************************998 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   1.4e-18     7e-16       1     130 [.      82     213 ..      82     215 .. 0.80

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 1.4e-18
                 EEEESSTTSSHHHHHHHHHHHH......THEEEEEETTTCS.SS...STTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHHHHTTCCCHHH CS
         AAA   1 vllyGppGtGKTllakavakel......gvefleisgsell.sk...yvgesekkirelfkeakeka.......kpsilfiDEidalaksrsgseseee 82 
                 +llyGppGtGKT+++ a+a+++       + +le+++s+ +  +    + ++ ++++++f+ a  ++       + + +++DE+da++++         
  KKY22637.1  82 LLLYGPPGTGKTSTILALARKIygaknmRQMVLELNASDDRgIDvvrEQIKTFASTKQIFSGAAPSStphsalgAFKLIILDEADAMTSAA-------- 172
                 69*******************64333224779******99944433333445556677777775555888999555***********9999........ PP

                 HHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSEEEET CS
         AAA  83 ervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdrkiei 130
                    + +L + +++++    ++ +++++n+ +kl+pall +R++r  + 
  KKY22637.1 173 ---QMALRRIMEKYTA---NTRFCIIANYTHKLSPALL-SRCTRFRFS 213
                 ...*************...589****************.999987665 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   1.6e-14     8e-12       2     162 ..      63     215 ..      62     216 .. 0.82

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 1.6e-14
  DNA_pol3_delta2   2 qeealkilskalksgrlahayLfeGdegigkkelalnlakallceeknetkpcgecksckkieqgkhpDvivieteekersikldqirelieel 95 
                      ++++l  +++ ++++rl h +L++G+ g+gk ++ l+la+++   ++ ++          +++  +   + v++++ k    ++ qi +  +  
       KKY22637.1  63 HQDILATINRFVEQNRLPH-LLLYGPPGTGKTSTILALARKIYGAKNMRQ-------MVLELNASDDRGIDVVREQIK-TFASTKQIFSGAAPS 147
                      6778899999********9.799********************9999866.......334444444444555555444.466677887665544 PP

  DNA_pol3_delta2  96 sr.kpreskkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelkfspl 162
                      s  ++  +  k+ii+++a+ mt++A+ al +++E   +n+ f +i++ t+kl + + SRc  ++fspl
       KKY22637.1 148 STpHSALGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPL 215
                      4415566***********************************************************98 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   1.7e-11   8.6e-09       4      75 ..      43     110 ..      40     197 .. 0.69

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 1.7e-11
       Rad17   4 denelWfekykPekaeelavhkkkieevkewlkadvLesrkkriLLisGPsGCgkstvvkvLs.kelgiklre 75 
                 ++n +W+eky+P+++++++ h+  +  ++++++ + L++     LL+ GP+G gk+ ++  L+ k++g k   
  KKY22637.1  43 QDNLPWVEKYRPNTLDDVSGHQDILATINRFVEQNRLPH-----LLLYGPPGTGKTSTILALArKIYGAKNMR 110
                 56779*************************999999987.....599*********99999984566665332 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   4.2e-09   2.1e-06       2      37 ..     230     265 ..     229     301 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 4.2e-09
                  XX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  AAA_assoc_2   2 ekklkleddalealaeladGDaRkaLnlLElaaeaa 37 
                  e+++k+++da++ l++l++GD+R+aLn+L+++ + +
   KKY22637.1 230 EEHIKITPDAIDSLVRLSKGDMRRALNVLQACHAGS 265
                  5789**************************876655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   5.1e-09   2.6e-06      21     119 ..      82     187 ..      67     191 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 5.1e-09
      AAA_30  21 avltGpAGtGKttalkal.reaweaag...grviglAptgkaAkvLaeelgieastiakllkrlk...grarlepgtllivDEagmvdtkqlaallkaa 112
                  +l Gp+GtGKt ++ al r+++ a++   + + + A+  +  +v++e++ + ast + +  +      + +l + +l+i DEa  + ++   al +++
  KKY22637.1  82 LLLYGPPGTGKTSTILALaRKIYGAKNmrqMVLELNASDDRGIDVVREQIKTFASTKQIFSGAAPsstPHSALGAFKLIILDEADAMTSAAQMALRRIM 180
                 4688*******9776666499999996443333478****************999999999877799955788888********877666666777777 PP

      AAA_30 113 ekagakv 119
                 ek+ a  
  KKY22637.1 181 EKYTANT 187
                 7776655 PP

>> DNA_pol3_delta  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0     2e-08     1e-05      62     170 ..     161     259 ..     155     260 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2e-08
                     EEE--.....TT-S-TTHHHHHHHHTTT--SSEEEEEEES.S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHHHHHH CS
  DNA_pol3_delta  62 vlknpklltkesklnekllkeLeeylsnlpedtlLiliapkklderkklvklLkkkatvveaktlkeeelkkwiqkraqelglkiekealelLle 156
                     +l+ +      +  +   + +L ++++++ ++t +++ia+       kl   L ++ t +++++lke ++++ ++k+++e+ +ki+++a++ L+ 
      KKY22637.1 161 ILDEA------DAMTSAAQMALRRIMEKYTANTRFCIIAN----YTHKLSPALLSRCTRFRFSPLKEPDIRRMVDKVVSEEHIKITPDAIDSLVR 245
                     44444......445666677899999*************9....456788888889999************************************ PP

                     HHTT-HHHHHHHHH CS
  DNA_pol3_delta 157 lvennlsaikqele 170
                     l+ ++++++ + l+
      KKY22637.1 246 LSKGDMRRALNVLQ 259
                     ******99988775 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.3e-07   6.3e-05      13      88 ..      68     143 ..      62     192 .. 0.58

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.3e-07
      AAA_16  13 lsalervrsgrpelvllsGesGvGKsslvrellralekd...ggiflrgkcdqlesaipysalaqalareellrqllde 88 
                 +++ + v ++r + +ll+G++G+GK+s + +l+r + ++   +  +l+ ++ +  ++i  +++ +++++    +q+ + 
  KKY22637.1  68 ATINRFVEQNRLPHLLLYGPPGTGKTSTILALARKIYGAknmRQMVLELNASDD-RGI--DVVREQIKTFASTKQIFSG 143
                 333346678888*****************9999988877665444444444444.222..2244444444444444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   7.5e-08   3.8e-05       7     118 ..      81     182 ..      76     203 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 7.5e-08
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrs 105
                 +l+++G++GtGKT ++  l+++    + a+++r  v++ +++ + + + +++++  +   ++      s +  +   + +  +++  l+i+DEa+ + +
  KKY22637.1  81 HLLLYGPPGTGKTSTILALARKI---YGAKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIF----SGAAPSSTPHSALGAFK--LIILDEADAM-T 169
                 799*******************8...56666889999999999999999999999888866666....33333444444444445..9*********.6 PP

      AAA_22 106 eealeeLrsllnl 118
                  +a   Lr++++ 
  KKY22637.1 170 SAAQMALRRIMEK 182
                 6666666666654 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   2.3e-07   0.00011      10      62 ..      70     119 ..      63     149 .. 0.68
   2 ?   -1.6   0.0       3.7   1.8e+03     216     226 ..     155     165 ..     141     183 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.3e-07
      AAA_11  10 iksalsese..itliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCap 62 
                 i+++++++     l+ GPPGtgKT+ti++l ++++      ++++++  + + a+
  KKY22637.1  70 INRFVEQNRlpHLLLYGPPGTGKTSTILALARKIY-----GAKNMRQMVLELNAS 119
                 56667777666689*******************94.....223333333333444 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.7
      AAA_11 216 kkfdvviIDEA 226
                 + f+++i DEA
  KKY22637.1 155 GAFKLIILDEA 165
                 4899******9 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   5.7e-07   0.00028       1      91 [.      81     182 ..      81     207 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 5.7e-07
                 EEEEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--HHHHH--B--...........--------.........G-SEEEEESGGG--HHHHHHHH CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal..nreveyvqltrdtteedlkgrreik..ngttslvdsplvraar.........egeilvlDEveraesevlnsLl 86 
                 ++lL GppGtgK++ +  la+ +      ++ q+   ++++d +g   ++   +t + +++++  aa            ++++lDE + + s+++++L 
  KKY22637.1  81 HLLLYGPPGTGKTSTILALARKIygA--KNMRQMVLELNASDDRGIDVVReqIKTFASTKQIFSGAAPsstphsalgAFKLIILDEADAMTSAAQMALR 177
                 79*********************663..44444444444444333333332234556666666666658888988888889999999999999999999 PP

                 HHHHS CS
       AAA_5  87 sllee 91 
                 +++e+
  KKY22637.1 178 RIMEK 182
                 99886 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.5e-07   7.4e-05      25     104 ..      55     133 ..      38     142 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.5e-07
      DUF815  25 vklddLvgidkqkealventeqfleglpannvLLwGarGtGKSslvkallneyaeeg.Lr..lievekedlkelpklvellre 104
                  +ldd+ g    ++++++ +++f+e+++  ++LL+G  GtGK s++ al +++  ++ +r  ++e++ +d + ++ + e++++
  KKY22637.1  55 NTLDDVSG----HQDILATINRFVEQNRLPHLLLYGPPGTGKTSTILALARKIYGAKnMRqmVLELNASDDRGIDVVREQIKT 133
                 44444433....45677899*****************************9997765554432667777776667666666665 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   4.3e-07   0.00021       2      57 ..      53     103 ..      52     116 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 4.3e-07
      RuvB_N   2 rPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakel 57 
                 rP++l++  g +++ ++++ f+e      + l h+llyGpPG Gkt+    +a+++
  KKY22637.1  53 RPNTLDDVSGHQDILATINRFVEQ-----NRLPHLLLYGPPGTGKTSTILALARKI 103
                 9****************9999985.....5699*************9888777765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   8.1e-07    0.0004       5      87 ..      82     178 ..      80     190 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 8.1e-07
      AAA_24   5 iliyGpsgiGKTtlakel........gpkplfidtekGlksldadkfpdieswedfldevvel......aaeladyktlviDtideleelclaevir 87 
                 +l+yGp+g+GKT++++ l          +  ++ ++++ ++  +   ++i++++  ++ +           +l  +k +++D +d + + +   ++r
  KKY22637.1  82 LLLYGPPGTGKTSTILALarkiygakNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSGAapsstpHSALGAFKLIILDEADAMTSAAQMALRR 178
                 79****************677776665555666666655543333335565666665555555999999888888*********9988766655554 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   1.6e-06   0.00082      11     115 ..      80     169 ..      71     204 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.6e-06
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.........atTiHrlal.......ldfddlltealellee 93 
                 ++ll+ ++pGtGKT ++ +  + +  ++++    + l a   r  + +re+++++             +T H+  l       l               
  KKY22637.1  80 PHLLLYGPPGTGKTSTILALARKIYGAKNMRQMVLELNASDDRGIDVVREQIKTFASTkqifsgaapSSTPHSA-LgafkliiL--------------- 162
                 6899******************99999999767777889999********995444444555555554444422.122444442............... PP

      AAA_19  94 aeeekklqeeellivDEfqdvd 115
                                DE+  ++
  KKY22637.1 163 ---------------DEADAMT 169
                 ...............3333333 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   7.2e-06    0.0036       1      58 [.      81     138 ..      81     205 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 7.2e-06
       AAA_3   1 hvllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkk 58 
                 h+ll g PG++kt ++ ala+++    +  q+  +l  sd  G++v++e+ k+f  +k
  KKY22637.1  81 HLLLYGPPGTGKTSTILALARKIYGAKNMRQMVLELNASDDRGIDVVREQIKTFASTK 138
                 99*********************9999999*******************999987654 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.3e-06    0.0016       9     120 ..      64     183 ..      59     188 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3.3e-06
                      HHHHHHHHHHCTSS..S-EEEECSTTSSHH....HHHHHHHHHSTTTTS-EEEEETTTS.-TTCHHHHH..HEBSSSSSTTTSS-BEHHHHHTT CS
  Sigma54_activat   9 kelleqikkvaktd..lsvlitGesGtGKe....llaraiheaskrkekpfvavncaai.peelleseL..FGhekGaFtGAekekkGlfekad 93 
                      +++l++i+++++++   ++l+ G  GtGK+     lar+i+ a++  ++ ++++n ++    ++++ ++  F  +k  F+GA  + +       
       KKY22637.1  64 QDILATINRFVEQNrlPHLLLYGPPGTGKTstilALARKIYGAKNM-RQMVLELNASDDrGIDVVREQIktFASTKQIFSGAAPSSTPHSALGA 156
                      56777888888777667899*********93333367888877664.556889999854255677665444**************999999999 PP

                      TSEEEEETGGGS-HHHHHHHHHHHHHS CS
  Sigma54_activat  94 gGtlfLDeigelplelQekLlrvlqeg 120
                         + LDe   ++ ++Q  L r++++ 
       KKY22637.1 157 FKLIILDEADAMTSAAQMALRRIMEKY 183
                      999********************9986 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       9.9   4.9e+03      69      90 ..      56      77 ..      32      81 .. 0.83
   2 !   17.3   0.0   7.3e-06    0.0037       5      98 ..      82     192 ..      78     216 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 9.9
      AAA_14 69 flDEiqevpewekalkslvdeg 90
                 lD ++  +++  +++++v+++
  KKY22637.1 56 TLDDVSGHQDILATINRFVEQN 77
                6899999999999999999876 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 7.3e-06
      AAA_14   5 lvitGaRrvGKTtllkqlikell...vkkesilyinldderd.....kkladpekllelileklke...........ekktylflDEiqevpe.wekal 83 
                 l++ G+  +GKT  +  l+++ +     ++ +l++n  d+r      ++++++++  +++     +              ++++lDE+  +++ ++ al
  KKY22637.1  82 LLLYGPPGTGKTSTILALARKIYgakNMRQMVLELNASDDRGidvvrEQIKTFASTKQIFS----GaapsstphsalGAFKLIILDEADAMTSaAQMAL 176
                 6899******************995544555556665555554333222222222223333....24456778998867789******98876267899 PP

      AAA_14  84 kslvdeg.knldvivt 98 
                 +++++++  n ++++ 
  KKY22637.1 177 RRIMEKYtANTRFCII 192
                 ***9988778888765 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00029      0.14      12      54 ..      66     109 ..      59     118 .. 0.77
   2 ?    4.0   0.0     0.089        44     123     162 ..     147     188 ..     116     193 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00029
                 HHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S.... CS
      ResIII  12 ienlleklks.krdkrglikmaTGtGKTlvaaklierllkkgke 54 
                 i ++++ + + +r  ++l+  + GtGKT ++++l+++++ +++ 
  KKY22637.1  66 ILATINRFVEqNRLPHLLLYGPPGTGKTSTILALARKIYGAKNM 109
                 5566666663255559*******************999887654 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.089
                 ....HHHTTT-SEEEEETGGGTTS.T..TTHHHHHT---SEE CS
      ResIII 123 eeseellrdrfdviiiDEaHrlgakk..swreilekfkeavl 162
                 + + +   ++f++ii DEa  +++++  + r+i+ek+ ++++
  KKY22637.1 147 SSTPHSALGAFKLIILDEADAMTSAAqmALRRIMEKYTANTR 188
                 45666778999********99988645688999999887765 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00061      0.31      23      57 ..      83     117 ..      64     131 .. 0.86
   2 ?    4.8   0.0     0.033        16     122     145 ..     159     181 ..     156     201 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00061
                 EEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE- CS
        PhoH  23 faiGpaGtGKtylavalavealkkkkvkriiltrp 57 
                    Gp GtGKt   +ala +++ +k++++++l  +
  KKY22637.1  83 LLYGPPGTGKTSTILALARKIYGAKNMRQMVLELN 117
                 678**************************999655 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.033
                 EEEE-SGGG--HHHHHHHHTTB-T CS
        PhoH 122 fvilDEAQnttkeqmkmfltRlGe 145
                 ++ilDEA  +t++  +m l R+ e
  KKY22637.1 159 LIILDEADAMTSA-AQMALRRIME 181
                 7******999875.5788888754 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.69   3.4e+02      16      40 ..      81     104 ..      66     117 .. 0.71
   2 !   14.1   0.0   6.1e-05     0.031      81     149 ..     103     183 ..      90     193 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.69
                 EEEEEESTTSSHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  16 dvlvaaeTGsGKTlaflipvlqivy 40 
                 ++l+ ++ G+GKT   l  +  ++y
  KKY22637.1  81 HLLLYGPPGTGKTSTILALAR-KIY 104
                 56788999*****98655444.444 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 6.1e-05
                 EETTSSHHHHHHHH....HTTCSEEEEEHHHHHHHH.........HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHS CS
                 xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  81 iiggvaardqlskl....dngvdivvgtpgrlddll.........stgklnlsqvrflVlDEadrlldqgfsdfinrilnql 149
                 i+g ++ r+ + +l    d+g+d+v    + +++           st +  l  +++++lDEad + +   +  ++ri+++ 
  KKY22637.1 103 IYGAKNMRQMVLELnasdDRGIDVVREQIKTFASTKqifsgaapsSTPHSALGAFKLIILDEADAMTSA-AQMALRRIMEKY 183
                 566666666666664443355777665555555544455777787788888*****************9.899999998877 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00012     0.059      23      58 ..      67     102 ..      58     143 .. 0.76
   2 ?   -0.4   0.0       1.3   6.4e+02     120     143 ..     157     180 ..     154     184 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00012
        TniB  23 LeeLleypkrkrmpnlllvGdsnnGKtmivekFarl 58 
                 L+ + ++ +++r p+lll+G++ +GKt+ +   ar+
  KKY22637.1  67 LATINRFVEQNRLPHLLLYGPPGTGKTSTILALARK 102
                 6777788899*****************988666554 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.3
        TniB 120 vrvLiiDEihnllagsarkqrefl 143
                  +++i+DE + + ++ + + r+++
  KKY22637.1 157 FKLIILDEADAMTSAAQMALRRIM 180
                 589*******99988777666655 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   5.1e-05     0.025       3      46 ..      83     146 ..      81     187 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.1e-05
      AAA_28   3 vitGgestGKTtlleaLa....................argypvvpEaareileeklakgedal 46 
                  + G+++tGKT+++ aLa                    +rg+ vv+E   ++ + k+ + + a 
  KKY22637.1  83 LLYGPPGTGKTSTILALArkiygaknmrqmvlelnasdDRGIDVVREQIKTFASTKQIFSGAAP 146
                 589***************6666666555554444433223777777777777777775555444 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     6e-05      0.03      35      71 ..      81     118 ..      65     129 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6e-05
       AAA_7  35 pvllvGptGtGKtviikdllkkld.kekylsltinfsa 71 
                 ++ll+Gp GtGKt++i  l +k+   +++  ++++++a
  KKY22637.1  81 HLLLYGPPGTGKTSTILALARKIYgAKNMRQMVLELNA 118
                 899***************88887646667777777666 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   7.6e-05     0.038       2      40 ..      83     121 ..      82     184 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.6e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgf.gvnlrdvakengllle 40 
                 ll G+pG+GKt+   +L+++  +   n r+++ e + +++
  KKY22637.1  83 LLYGPPGTGKTSTILALARKI-YgAKNMRQMVLELNASDD 121
                 689****************95.455566666665554444 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.5e-05     0.028       5     106 ..      83     174 ..      81     194 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.5e-05
     DUF2075   5 lVtGvaGtGKtvvllnllael..eddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDEAhrll 101
                 l  G +GtGKt   l+l+ ++   ++ ++    +     + ++v+re+++  +   + k+ f++ +   ++ s         +   ++++i DEA  ++
  KKY22637.1  83 LLYGPPGTGKTSTILALARKIygAKNMRQMVLELNASDDRGIDVVREQIKTFA---STKQIFSGAAPSSTPHS---------ALGAFKLIILDEADAMT 169
                 6689*****************43333344444444445567889*****7766...33344444333333333.........558999******99998 PP

     DUF2075 102 tksdq 106
                 + +++
  KKY22637.1 170 SAAQM 174
                 85544 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00044      0.22      24      43 ..      81     100 ..      57     187 .. 0.70
   2 ?   -1.1   0.0       2.1     1e+03     177     192 ..     191     206 ..     165     209 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00044
  Mg_chelatase  24 nlllvGppGsGKtmlakrlp 43 
                   +lll+GppG+GKt  + +l+
    KKY22637.1  81 HLLLYGPPGTGKTSTILALA 100
                   89**********96554443 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.1
  Mg_chelatase 177 eierYlsklsgplldR 192
                    i++Y++kls +ll R
    KKY22637.1 191 IIANYTHKLSPALLSR 206
                   4789999999999998 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00028      0.14       2      26 ..      83     107 ..      82     194 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00028
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl 26 
                   +lyGp+g+GK++++  La+++ ++ 
    KKY22637.1  83 LLYGPPGTGKTSTILALARKIYGAK 107
                   79******************98655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00023      0.11      37      61 ..      83     107 ..      69     137 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00023
      AAA_25  37 llaGapgtGKttlaldlalavatGk 61 
                 ll+G+pgtGKt   l la ++   k
  KKY22637.1  83 LLYGPPGTGKTSTILALARKIYGAK 107
                 8*****************9987554 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00022      0.11       3     165 ..      82     230 ..      81     231 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00022
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-....-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEE.....EEEE-STT-SS CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna.rsladllfsqlpepaapvsevwavllelperlL.....lilDglDelvt 95 
                 ++l G++G GKT  +  la+++   k  +   ++v+ l+ ++++ +  +   ++++   ++  ++a++s       + p+++L     +ilD +D + +
  KKY22637.1  82 LLLYGPPGTGKTSTILALARKIYGAKNMR---QMVLELNASDDRGIDVVrEQIKTFASTKQIFSGAAPS-------STPHSALgafklIILDEADAMTS 170
                 6899******************9999655...8999999999999988854444444444444444444.......477777777777**********9 PP

                 -TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSCE..EEEE--TCCHHHHHHHHCTTT CS
       NACHT  96 dlgqkekqpvrtlLselirkkllpeasllltvrpralrdleeqleeaivlevegfsesrrkqlvrkyfsd 165
                   +          L+++++k    +  ++++  + +l   + +l++ +++   +++e++++++v k+ s+
  KKY22637.1 171 AAQM--------ALRRIMEKYTANTRFCIIANYTHKL--SPALLSRCTRFRFSPLKEPDIRRMVDKVVSE 230
                 7777........8999999977777777777777777..899999999999********99999998876 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0     0.001       0.5      49      71 ..      81     103 ..      62     198 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.001
   IstB_IS21  49 nivllGpsGvGKshlaialgvea 71 
                  ++l Gp+G+GK+    al+++ 
  KKY22637.1  81 HLLLYGPPGTGKTSTILALARKI 103
                 6899*********9999999875 PP

>> MiaE  tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00029      0.14      28     129 ..     157     266 ..     148     271 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00029
        MiaE  28 ldvlLlDhlaCelkaaqtall.llrkYavdke......sedsll.awlkpyeefayrkdrdiekkeiskallaksdspsakdlvdklvrlikeelehfe 118
                 +++++lD       aaq al  ++ kY+++         ++ l  a l     f +   ++++ ++++  ++++++  ++ d +d+lvrl k +++   
  KKY22637.1 157 FKLIILDEADAMTSAAQMALRrIMEKYTANTRfciianYTHKLSpALLSRCTRFRFSPLKEPDIRRMVDKVVSEEHIKITPDAIDSLVRLSKGDMRRAL 255
                 568899999999999999995488999887652211111222221445667899999999***9********************************999 PP

        MiaE 119 qvlelleaRni 129
                  vl+  +a  +
  KKY22637.1 256 NVLQACHAGSM 266
                 99999887665 PP

>> TK  Thymidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00052      0.26       5      98 ..      83     178 ..      81     198 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00052
          TK   5 lilgpmfaGKsteLlrrvkr.yqlaekkvvvika.akdnRysegkvvthdgisleakksktssleeikeeleeedvdvvlvDEaqFfe.qdivelse 98 
                 l++gp  +GK++++l  +++ y  ++++ +v+   a d+R   + v  +++++ ++k++ + ++ + + +++  +++ +++DEa  ++    + l +
  KKY22637.1  83 LLYGPPGTGKTSTILALARKiYGAKNMRQMVLELnASDDRGI-DVVREQIKTFASTKQIFSGAAPSSTPHSALGAFKLIILDEADAMTsAAQMALRR 178
                 6799999***99988877653788899999888615677776.57999999999999888899999999999999*********9888444444444 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00036      0.18       8      70 ..      67     129 ..      64     199 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00036
    ATPase_2   8 lkeleeilerepneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefie 70 
                 l  +++ +e+++ + +++YGp g GKt+ +  ++ +    +  +  + +l+ ++   +d   e
  KKY22637.1  67 LATINRFVEQNRLPHLLLYGPPGTGKTSTILALARKIYGAKNMRQMVLELNASDDRGIDVVRE 129
                 567999999999999*************99999998877666666677776666666666633 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00047      0.23      14      80 ..      82     171 ..      76     254 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00047
                 EEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.....................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................x RF
    ABC_tran  14 vaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.....................e 80 
                 + + G+ G+GK++ + +la++     ++ ++ l+ + ++++ + ++r++i+++  ++q+f++    ++                     +
  KKY22637.1  82 LLLYGPPGTGKTSTILALARKIYGakNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSGAAPSSTphsalgafkliildeadamtsA 171
                 5799********9999999998874455677788888889999999****9999999999998655557777777777777665533221 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00049      0.24      39      75 ..      70     104 ..      63     131 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00049
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  39 ivelikekklaGravLlaGpsgtGktalaiaiskelg 75 
                 i +++++++l    +Ll Gp+gtGkt+  +a+++++ 
  KKY22637.1  70 INRFVEQNRLP--HLLLYGPPGTGKTSTILALARKIY 104
                 66788888887..89******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      645  (0.0359752); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              36  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 2689.57
//
Query:       KKY22638.1  [L=498]
Description: putative histidine acid [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-06   27.2   0.1    0.00024   20.6   0.0    2.1  2  His_Phos_2  Histidine phosphatase superfamily (branch 2)


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0   0.00033         6       4      24 ..      23      43 ..      20      45 .. 0.80
   2 !   20.6   0.0   1.3e-08   0.00024      75     330 ..      43     297 ..      38     349 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00033
                EEEEEEE--SBB-SHHHHHHH CS
  His_Phos_2  4 svvvviRHGdRtPkqkvkksv 24
                +v + +RHGdRt k++   ++
  KKY22638.1 23 GVYIFSRHGDRTSKSTAPTNL 43
                68889*********9887665 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.3e-08
                 B-HHHHHHHHHHHHHHHHHCH........TCCHTTSS--TTEEEEEESSHHHHHHHHHHHHHHCHCCC---.......S-TTSTTGGG-TTTTCCCEEE CS
  His_Phos_2  75 lthaGrkqaeelGrqfrqrYp........lgLlrlhltykdlkirassegRviaSAaafakGllglegelt.......dllskdkdllddsnaakdlld 158
                 lt  G+++++++G ++r rY         +g++ +  + ++l + a s +    SA  f +Gl+++ g +t       + + ++  l  ++   + +++
  KKY22638.1  43 LTDLGYQEVYTSGGYYRSRYIdsdatskiHGINSDLVKLSQLTVSAPSDNVLMSSAIGFCQGLYPPVG-TTlgaetlhNGTTVEAPLNGYQLIPVATVS 140
                 9****************************9999997766*****99999988889999**********.447**9999999999*************** PP

                 HHHHCCCCHHCTTSHHTCHHHC.HHHTGGHCHHH.HCHCCCCCHHHHHHHCHHHCTTEEEE-HHHHHHHHHHHHHHHHHHCT-TTGGGCTH..HCHHHH CS
  His_Phos_2 159 eakkklkelltegaeacpafew.pikvakrvdel.vkylkedmdeniakrleqlcpgesnllakerwdklercfyeknkfdiskicdlydemkydalhn 255
                    +++++ +++g+ +c++ e   + + + ++ l + + ++d+ +++++  + +++  +++++k+ ++ ++   +    ++  +  dl ++  + + + 
  KKY22638.1 141 TGTSSEDSAWLQGSSNCAKAEIsSNSYYTSTEYLtLLNSTQDFYTSLTPMINRTFST-DEISFKNAYTIFDYLNVASIDNGTFPSEDLLTT--EVLYQL 236
                 **************9999998853444444443313455788888999888888655.5********************************..****** PP

                 HHHHHHHHHHHC........TTTCCCCHHHHHHHHHHHHHHHCTSSSEECCSCCCECS-SEEEEEE-HHHHHHHH CS
  His_Phos_2 256 rylkdleelyklakvipqEygigpeeklkiGllllnpllkkilndlqrtreeatperhvrlrlyfthdshiysll 330
                 r l d +e+          y+ +++++   G  l+ +++  ++  +  + +        +l ++f+   + +s +
  KKY22638.1 237 RTLADNHEWNLA-------YNASESIRAISGATLAAQVVSALNGTITGKGK-------NKLNIQFGAYATFASYF 297
                 ********8888.......8*************************999994.......44444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       990  (0.0552178); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 2989.55
//
Query:       KKY22639.1  [L=674]
Description: putative oxidosqualene:lanosterol cyclase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-50  171.9   0.2    9.5e-47  159.6   0.3    2.2  2  SQHop_cyclase_C  Squalene-hopene cyclase C-terminal domain
    6.9e-42  143.5   1.9    2.3e-36  125.4   0.0    4.1  4  SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
    1.2e-28   98.5   3.8    1.6e-07   31.0   0.4    5.3  5  Prenyltrans      Prenyltransferase and squalene oxidase repea
     0.0012   18.2   0.8        7.9    5.7   0.2    4.0  4  Pec_lyase        Pectic acid lyase


Domain annotation for each model (and alignments):
>> SQHop_cyclase_C  Squalene-hopene cyclase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   7.4e-05      0.33     159     230 ..      22      92 ..       5     124 .. 0.74
   2 !  159.6   0.3   2.1e-50   9.5e-47       4     319 .]     335     666 ..     333     666 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 7.4e-05
                      HHHHHHHHHHHHHS-TTS----SSBSSHHHHHHHHHHHH....HHTT--TTSHHHHHHHHHHHTT--TTSSBB--G CS
  SQHop_cyclase_C 159 ealkraveylkkeqepdGsWfGrWGvnyiyGtwsvlsal....aavgedleepvirkavdWlksvqnedGGWGesa 230
                      e++++ +++  k q p G     WG +y  G +  l ++     + g++  e +  +  ++l ++qn+dGGWG + 
       KKY22639.1  22 ESINNVLDFYSKLQLPAGH----WGCEY-DGPMFLLPGIvitwYVTGTPIPEHTAIEIKRYLYDRQNKDGGWGLHI 92 
                      5677778888888888765....56666.34444444441000556677666666677789***********9665 PP

  == domain 2  score: 159.6 bits;  conditional E-value: 2.1e-50
                      HHHHHHHHHHHHHHT--...TT-HHHHHHHHHHHTT-B-S.--GGGGT-TTS---BB-SSSS-TT--BHHHHHH...HHHHHTT---STHHHHH CS
  SQHop_cyclase_C   4 vWdtalavlalleagve...aeeealkkaleWllekqvlv.kGdWkvkrpevepgGwafefaneyyPdvddtav...vvlalkrvrlkeekkke 90 
                      vWdta+++l+++eag     + ++ l++a  +l ++q+++   + +v  ++ + g w f  + + y   d t+     +l l++++   +  +e
       KKY22639.1 335 VWDTAFSILSIVEAGLTespKWRPMLEQAHAFLDRHQIREeVREREVCYRQQRKGAWPFSTKTQGYTVTDCTSEglkAILLLQNIHDYPKLLSE 428
                      9************986512266899*************96256788888999**************9999998611245566777777788889 PP

                      HHHHHHHHHHHHTB-TTSSB-SSSSSB--SGGGGSTT-SS..S-SSB--BHHHHHHHHHHHHHHT-.......-TTSHHHHHHHHHHHHHS-TT CS
  SQHop_cyclase_C  91 eaiaraveWilglqsknGGwaafdkdntkellnkiPfadh..ealldpptadvtarvlellaqlge.......eedsealkraveylkkeqepd 175
                      ++i  a++ +l++q+  GG+a+++     e l+ +  a+     ++++   + t+ v+ +++ +++        e + + +rav+y+k  q +d
       KKY22639.1 429 RRIFDAIDLLLTMQNPSGGFASYEPTRGPEWLEMLNAAEVfgRIMIEYDYPECTTAVVTAMSLFQKlypkyrtAEIAASKARAVKYIKDAQAAD 522
                      9**********************************99996445799999999999999998877643222111344566789************ PP

                      S----SSBSSHHHHHHHHHHHHHHTT--.TTSHHHHHHHHHHHTT--TTSSBB--GGGGT-GGGTT-SSBBHHHHHHHHHHHHHTTGGGSHHHH CS
  SQHop_cyclase_C 176 GsWfGrWGvnyiyGtwsvlsalaavged.leepvirkavdWlksvqnedGGWGesaesykdpklagkgestasqtaWallallaageveseavk 268
                      GsW+G WG+ + y ++ +l +la++ge   +++ +rk+ ++l s+q +d GWGes +  + ++++++ +s   +t+Wa++al+ a   ++e +k
       KKY22639.1 523 GSWYGSWGICFTYAAMFALESLASIGEIySNSERVRKGCHFLLSHQMADSGWGESYRGCELKTYVNHEKSQVVNTSWACIALMHAEYPDKEPMK 616
                      **************************87488999************************************************************ PP

                      HHHHHHHHH--TTS-----S--EEEETTTEEEEETTHHHHHHHHHHHHHHH CS
  SQHop_cyclase_C 269 rGiaylletqkedGtWeeeaytgtGfPrvfylkyhlyrkvfPllalaryrk 319
                      + +  ++++q+++G+W +ea+ g  f  + +++y +y+ +fP+ al+ y+k
       KKY22639.1 617 KALTLIMSRQQRNGEWLQEAIEGV-FNCTTMITYPNYKYYFPVKALGMYQK 666
                      *******************99985.999********************985 PP

>> SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   0.0   5.1e-40   2.3e-36       6     237 ..      29     270 ..      24     322 .. 0.81
   2 ?   -1.0   0.0      0.17   7.7e+02      48      73 ..     375     400 ..     363     432 .. 0.75
   3 !   10.2   0.0   6.5e-05      0.29       3      67 ..     510     577 ..     508     587 .. 0.79
   4 !    3.6   0.0    0.0065        29      36      65 ..     605     633 ..     584     665 .. 0.75

  Alignments for each domain:
  == domain 1  score: 125.4 bits;  conditional E-value: 5.1e-40
  SQHop_cyclase_N   6 eallslqkpdGhWvgeLeanvtitaeyillrefl.geddeeeeekiakylrsqqredGgWelypggpgdlsttveaYlALkllGdspdapalar 98 
                      ++  +lq p+GhW  e +  + +    ++   +   ++ e+++ +i++yl ++q++dGgW+l+ +g++ ++ t   Y+ +++lG s+++p++++
       KKY22639.1  29 DFYSKLQLPAGHWGCEYDGPMFLLPGIVITWYVTgTPIPEHTAIEIKRYLYDRQNKDGGWGLHIEGASTVFGTTMNYIVMRILGASAEEPRIIK 122
                      6667899************9999999999999997777888999************************************************** PP

  SQHop_cyclase_N  99 ArefilarGGvakvrvfTrilLalfglvpweavpalPpelmlLPkwfpfniykfsswaRttivPllilsakkpvaklpr..evdldELfveppe 190
                      Ar ++++ GG+     +++++L+++ ++pwe+++  Ppe+ lLP+w+p++ +++  + R + +P++++s+kk++++l++  +   +ELfvep e
       KKY22639.1 123 ARGLLHQFGGALYGPHWSKLWLCILNIMPWETCNPTPPEMWLLPNWVPVHPWRWWIHIRMVFLPMSYISSKKFQHPLNPltKSLREELFVEPYE 216
                      *****************************************************************************8887888899******* PP

  SQHop_cyclase_N 191 evkyel.......rkekkalsw.tklflaldkvlkllerlplkplrkrAlrkaee 237
                      ++++         + + + +sw  +lf  l + + ++  l ++ l+kr+ + + e
       KKY22639.1 217 TINFPAyrsaiapSDNYHPKSWlLNLFMFLIANI-WYPLLRPNFLKKRGEDWVYE 270
                      9999843333332233334445444454443322.34455555555555555555 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.17
  SQHop_cyclase_N  48 ekiakylrsqqredGgWelypggpgd 73 
                      e  ++ ++ +q+ +G+W+  ++ +g 
       KKY22639.1 375 EVREREVCYRQQRKGAWPFSTKTQGY 400
                      44467778899999***998877764 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 6.5e-05
  SQHop_cyclase_N   3 raaeallslqkpdGhWvgeLeanvtitaeyil..lreflged.deeeeekiakylrsqqredGgWely 67 
                      ra +++ + q +dG W+g    + t  a   l  l  + ++  ++e+ +k +++l+s+q +d gW+  
       KKY22639.1 510 RAVKYIKDAQAADGSWYGSWGICFTYAAMFALesLASIGEIYsNSERVRKGCHFLLSHQMADSGWGES 577
                      8999***************999999988776632333333322688999****************865 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.0065
  SQHop_cyclase_N  36 reflgeddeeeeekiakylrsqqredGgWe 65 
                      +   +  d+e ++k+ + ++s+q+ +G W 
       KKY22639.1 605 M-HAEYPDKEPMKKALTLIMSRQQRNGEWL 633
                      3.3356679999999999999999999994 PP

>> Prenyltrans  Prenyltransferase and squalene oxidase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.086   3.8e+02       7      27 ..      28      48 ..      23      62 .. 0.81
   2 !   30.3   0.0   5.7e-11   2.5e-07       6      44 .]      74     112 ..      73     112 .. 0.92
   3 !    6.4   0.0    0.0016       7.4      10      22 ..     438     450 ..     433     452 .. 0.85
   4 !   31.0   0.4   3.5e-11   1.6e-07       3      44 .]     508     548 ..     506     548 .. 0.95
   5 !   25.8   0.1   1.4e-09   6.3e-06       3      36 ..     557     600 ..     555     606 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.086
                 HHHHHHHSHTTS-BBSSTTSS CS
  Prenyltrans  7 vefLlscQnedGGwggrpgse 27
                 ++f  + Q + G+wg+ ++++
   KKY22639.1 28 LDFYSKLQLPAGHWGCEYDGP 48
                 566678999******988874 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 5.7e-11
                  HHHHHHHHSHTTS-BBSSTTSSBBHHHHHHHHHHHHHCT CS
  Prenyltrans   6 avefLlscQnedGGwggrpgsesdtyytywalaaLallG 44 
                  + ++L+ +Qn+dGGwg++ ++ s++++t +++ ++ +lG
   KKY22639.1  74 IKRYLYDRQNKDGGWGLHIEGASTVFGTTMNYIVMRILG 112
                  779**************************9998888876 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0016
                  HHHHSHTTS-BBS CS
  Prenyltrans  10 LlscQnedGGwgg 22 
                  Ll++Qn++GG+++
   KKY22639.1 438 LLTMQNPSGGFAS 450
                  899********86 PP

  == domain 4  score: 31.0 bits;  conditional E-value: 3.5e-11
                  HHHHHHHHHHHSHTTS-BBSSTTSSBBHHHHHHHHHHHHHCT CS
  Prenyltrans   3 vekavefLlscQnedGGwggrpgsesdtyytywalaaLallG 44 
                  +++av +++  Q +dG+w+g++g + +ty++++al +La +G
   KKY22639.1 508 KARAVKYIKDAQAADGSWYGSWGIC-FTYAAMFALESLASIG 548
                  7899*********************.*************887 PP

  == domain 5  score: 25.8 bits;  conditional E-value: 1.4e-09
                  HHHHHHHHHHHSHTTS-BBSSTTS..........SBBHHHHHHH CS
  Prenyltrans   3 vekavefLlscQnedGGwggrpgs..........esdtyytywa 36 
                  v+k + fLls+Q++d Gwg+++ +           s +++t wa
   KKY22639.1 557 VRKGCHFLLSHQMADSGWGESYRGcelktyvnheKSQVVNTSWA 600
                  89********************************99*****999 PP

>> Pec_lyase  Pectic acid lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.01        47      65      88 ..     432     455 ..     386     462 .. 0.92
   2 !    5.7   0.2    0.0018       7.9      40      83 ..     484     527 ..     480     538 .. 0.90
   3 !    4.1   0.0    0.0053        24      62      86 ..     555     579 ..     534     596 .. 0.80
   4 ?   -1.3   0.0      0.25   1.1e+03      61      83 ..     612     634 ..     600     638 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.01
   Pec_lyase  65 rkglefllkaqYsnGgwpqfyPlk 88 
                   +++ ll++q ++Gg+  + P++
  KKY22639.1 432 FDAIDLLLTMQNPSGGFASYEPTR 455
                 5799**************999987 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0018
   Pec_lyase  40 atvtellflaevykatkdekykdavrkglefllkaqYsnGgwpq 83 
                 a vt + ++ ++y + + ++  ++  ++++++ +aq + G+w  
  KKY22639.1 484 AVVTAMSLFQKLYPKYRTAEIAASKARAVKYIKDAQAADGSWYG 527
                 77899999**********************************65 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.0053
   Pec_lyase  62 davrkglefllkaqYsnGgwpqfyP 86 
                 + vrkg  fll+ q +  gw   y 
  KKY22639.1 555 ERVRKGCHFLLSHQMADSGWGESYR 579
                 5699****************99885 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.25
   Pec_lyase  61 kdavrkglefllkaqYsnGgwpq 83 
                 k+ ++k+l  +++ q  nG w q
  KKY22639.1 612 KEPMKKALTLIMSRQQRNGEWLQ 634
                 677899***************88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.53
# Mc/sec: 3846.76
//
Query:       KKY22640.1  [L=544]
Description: hypothetical protein UCRPC4_g03258 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        3.9    6.0  13.9        8.2    5.0  13.9    1.4  1  Ndc1_Nup  Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  13.9   0.00046       8.2     343     459 ..     385     510 ..     383     537 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.00046
    Ndc1_Nup 343 ikeltqrinergq..papkaaps.kapknkasapvkelprlsksplkkk..dde.....ifgnsltaeaspkssssskegvekalsslakspgqs.psp 430
                 i+++++ +++ g   p+p+++ + + p++ +++p +++p++++ +++++  + +      f+    +++++++++ss++++++++ +++++p++s ++p
  KKY22640.1 385 INKFKTWLTKNGPtpPPPNPT-NsSMPSSGSTTPTNAKPSTTTMSNNNNttS-SsltfpFFH----PSPPSSRPNSSSSTISTTTRPTSANPSSSsSQP 477
                 788999999999974334444.356678888888999999988887776643.335553444....333344466788888888888888888887666 PP

    Ndc1_Nup 431 tarls....prarkllekaksrllskeqkeals 459
                 +  l       ++++ ++++s++  ++q++a+ 
  KKY22640.1 478 PTYLPvraaTITPSTTTSSASAAAAPTQAQAIA 510
                 666664444444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.51
# Mc/sec: 3206.72
//
Query:       KKY22641.1  [L=603]
Description: putative siderophore iron transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-21   75.1  47.1    2.6e-18   66.1  47.1    2.7  1  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.22    9.9  22.7       0.69    8.3  22.6    1.7  1  TRI12     Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1  47.1   2.9e-22   2.6e-18       1     352 [.      74     507 ..      74     508 .. 0.88

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 2.9e-22
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlg 98 
                 +ll++f+ +l+  +++ + p ++ +d++  +s i     l ++  a+  lpl+ + d +Gr   + l++++  lg l+++ a  ++ + +++ v+  +g
  KKY22641.1  74 ILLIYFVDSLQQQTTNQLTP-YVYSDFQ-LHSLIPVTGILSSIIGALVKLPLAKILDVWGRPLGFTLMVACCTLG-LIMMAAcKNVETYCAAQVFYWVG 169
                 58999***************.9999999.6677888888899********************9************.55553469999************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv..lfllll..............peepperkr 181
                 + +++ + +++iad ++ e+rg++++++++ + + +  g +++  ++ + gW++ f  +aiv+ ++    +fl+l+                       
  KKY22641.1 170 YNGMTYVLGVFIADTSKLENRGLMFAYANSPYIATTWAGGPAATSFLKNSGWPWGFGTFAIVTPVVSSplIFLFLYnyrkaarmnlmpppS-------- 260
                 ******************************************************************4443444555655555555433330........ PP

       MFS_1 182 kspkeee..................................................................................kgtgpaplvp 198
                       e                                                                                  k ++p+ ++p
  KKY22641.1 261 ------ErtwlqsckyyaiefdreslgksklswadfktvfgiillasglalfllpfslysyqgdgwrssmiicmiifgglliiafvfyeKYWAPKTFIP 353
                 ......233455555667777777777777778888*************************************************************** PP

       MFS_1 199 awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr..lgrrrrlllallllllaalglalla 295
                  +++l+ + vl ++++a  lf + ++    ++ ++lq v + s    +++++ ++ +++++ a+++g l++   + r+ +l+++l+l +l+  +++ + 
  KKY22641.1 354 -FSLLVDRTVLGACILAGTLF-VSYYCWDGYFSSFLQVVQNQS-ITHTTYISNIYTIGSCFWAIVVGILIKWsgTFRWLALYMGLPLQILGIGLMIHFR 449
                 .********886444444444.377779***************.8999999*******************99777779********************* PP

       MFS_1 296 vtssavllllvlvl.iGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                  +++++ +++++ + i fg+g+ +++ + +a+  a  e+ +t++++ ++++s+gga+g
  KKY22641.1 450 QPDTNIGYVVMCQIfIAFGGGTLVICEQIAAMAAAKHENIATVLAIESMFSSIGGAIG 507
                 **********88886899***************************************9 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  22.6   7.7e-05      0.69     241     477 ..     293     527 ..      78     533 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 7.7e-05
       TRI12 241 wigiilvivgvslfllgvswggkpnspwnsakviglissglgslvvfalyevygkpvrpivppalfkdtrgf.vcillissimgamnlslviiypqqvv 338
                   giil++ g +lfll  s      + w s+ +i +i  g   ++ f +ye y  p+  ++p +l+ d   +  cil   +++ +   +    +    +
  KKY22641.1 293 VFGIILLASGLALFLLPFSLYSYQGDGWRSSMIICMIIFGGLLIIAFVFYEKYWAPK-TFIPFSLLVDRTVLgACIL-AGTLFVS-YYCWDGYFSS-FL 387
                 269************************************9989999********996.689***9999665513443.3333333.3444433333.22 PP

       TRI12 339 nifgsslknweetawmsatasfgtgagvvvlgslfhlvrhirwqilvgalwltaflgamssvnrdnknaaialsvlsgfvvawaqditmllvqfitt.. 435
                 +++    +    t+++s   ++g+    +v+g l++     rw  l   l l   lg    +   + ++ i   v++ + +a+     ++  q+ +   
  KKY22641.1 388 QVVQ--NQSITHTTYISNIYTIGSCFWAIVVGILIKWSGTFRWLALYMGLPLQI-LGIGLMIHFRQPDTNIGYVVMCQIFIAFGGGTLVICEQIAAMaa 483
                 2222..23456899**********9999***************99999998864.56666666667778899999999999998876666666544311 PP

       TRI12 436 ..dedlgvafavvaaarpfagsiftaafislysnrypkelashl 477
                    e++   +a+ +    + g+i ++   ++++  +pk l  +l
  KKY22641.1 484 akHENIATVLAIESMFSSIGGAIGSTVSAAIWTGTFPKALEEYL 527
                 11566776677766667777777777888899999999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       844  (0.0470746); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.51
# Mc/sec: 3524.10
//
Query:       KKY22642.1  [L=331]
Description: putative cytosolic fe-s cluster assembling factor cfd1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-78  262.9   0.0      2e-76  256.7   0.0    2.2  1  ParA         NUBPL iron-transfer P-loop NTPase
    1.8e-09   37.7   0.0    3.4e-09   36.8   0.0    1.6  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    2.7e-07   30.2   0.0    4.2e-06   26.3   0.0    2.0  2  MipZ         ATPase MipZ
    0.00011   22.1   0.0    0.00033   20.6   0.0    1.7  2  AAA_31       AAA domain
    0.00037   19.8   0.1    0.00063   19.0   0.1    1.3  1  ArsA_ATPase  Anion-transporting ATPase
     0.0037   16.3   0.1     0.0061   15.6   0.1    1.3  1  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
     0.0075   15.9   0.1      0.014   15.0   0.1    1.3  1  AAA_25       AAA domain
  ------ inclusion threshold ------
      0.015   15.1   0.4       0.67    9.8   0.2    2.4  2  AAA_26       AAA domain
       0.02   14.4   0.2      0.041   13.3   0.1    1.6  2  CBP_BcsQ     Cellulose biosynthesis protein BcsQ
      0.027   14.8   0.1      0.099   13.0   0.1    1.9  3  AAA_16       AAA ATPase domain
      0.034   14.1   0.1      0.054   13.4   0.1    1.3  1  APS_kinase   Adenylylsulphate kinase
      0.099   12.4   0.0       0.47   10.2   0.0    1.8  2  IstB_IS21    IstB-like ATP binding protein


Domain annotation for each model (and alignments):
>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.7   0.0   1.3e-79     2e-76       1     220 [.       5     272 ..       5     292 .. 0.89

  Alignments for each domain:
  == domain 1  score: 256.7 bits;  conditional E-value: 1.3e-79
        ParA   1 kvkkviavlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgvee...................ekpeqs...ekkliPvea...kgik 74 
                 +v++v +vlSgKGGVGKS+v+ +lAlaL+++g++vg+lD+D++Gpsiprl+g ee                   e   ++    ++  Pv++    +++
  KKY22642.1   5 NVSQVCLVLSGKGGVGKSSVTLQLALALTDQGYNVGILDIDLTGPSIPRLVGKEEakvkqaaggwlpvevyprvE---AQngsITTSAPVTSrtrGSLH 100
                 5899*************************************************9977777777777777775332...2211122345777677678** PP

        ParA  75 vmSigfllesedeavvwrGpmkskaikqllkdvew.gelDyLiiDlPPGtgDeqltvaqkl.pla.........................gaviVttpq 146
                 ++S++fll+s+++av+wrGp+k+++i+q+l+d+ w  + D+L++D+PPGt+De++++a++l +                           gav+Vttpq
  KKY22642.1 101 ALSLAFLLPSRSSAVIWRGPKKTAMIRQFLSDALWpPNTDFLLVDTPPGTSDEHIAIAEELhK-LqaeaqvgaavsggigglptpsgqlmGAVVVTTPQ 198
                 ***********************************558***********************63.33667889999999999999999999********* PP

        ParA 147 evaladvkkaiemfkkvkvkvlGvveNmsgfvcpkcgekteifgkgggeklaeelgvpllgeipldpeireasd 220
                  ++++dv+k+++++ k++++vlGv+eNm+g++cp cge+ +if+kggge +a+e gv++lg +p+d+ + ++++
  KKY22642.1 199 AISTSDVRKELNFCVKTSIPVLGVIENMAGYICPCCGEEANIFSKGGGEVMAHEAGVRFLGGVPVDTGFGSMVE 272
                 ******************************************************************99888776 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   2.3e-12   3.4e-09       2      55 ..      11     171 ..      10     274 .. 0.70

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 2.3e-12
                 EEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH.............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................. RF
        CbiA   2 aiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep.............................................. 54 
                 ++ s+kGGvGK+++++ La al ++g++V  +D D  +++   l g+e+ + +                                              
  KKY22642.1  11 LVLSGKGGVGKSSVTLQLALALTDQGYNVGILDIDLTGPSIPRLVGKEEAKVKqaaggwlpvevyprveaqngsittsapvtsrtrgslhalslafllp 109
                 689************************************988666666665557888888888888888888888888887777777777777777777 PP

                 .............................................................C CS
                 .............................................................x RF
        CbiA  55 .............................................................d 55 
                                                                              +
  KKY22642.1 110 srssaviwrgpkktamirqflsdalwppntdfllvdtppgtsdehiaiaeelhklqaeaqvG 171
                 77777777766666666666666666666666666666665555555555555554444440 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.8e-09   4.2e-06       5      56 ..      12      63 ..       8      83 .. 0.87
   2 ?    1.7   0.0     0.088   1.3e+02      98     116 ..     137     156 ..      92     164 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2.8e-09
                E--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--TTT-HHHHHHHHHHHHHH CS
        MipZ  5 lgnekGGsGksttavhvavaLlkkGarvaaidldlrqrtlarylenraatae 56
                +   kGG Gks +++ +a aL+++G +v+ +d+dl   ++ r ++   a ++
  KKY22642.1 12 VLSGKGGVGKSSVTLQLALALTDQGYNVGILDIDLTGPSIPRLVGKEEAKVK 63
                4567********************************9999999988777665 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.088
                 HH-SEEEEE--.SS--HHHH CS
        MipZ  98 aeldfividtP.Gsdsalsr 116
                  ++df+++dtP G+ ++ + 
  KKY22642.1 137 PNTDFLLVDTPpGTSDEHIA 156
                 689*******7365555554 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.2e-07   0.00033       4      40 ..      10      46 ..       7      90 .. 0.90
   2 ?   -1.6   0.0       1.5   2.2e+03     117     127 ..     138     148 ..     105     152 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.2e-07
      AAA_31  4 IaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDp 40
                  +   KGGvGK+  +++la al+ +g+ v + D+D 
  KKY22642.1 10 CLVLSGKGGVGKSSVTLQLALALTDQGYNVGILDIDL 46
                557788*****************************96 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.5
      AAA_31 117 eYDyiiiDcpP 127
                 + D+ ++D+pP
  KKY22642.1 138 NTDFLLVDTPP 148
                 45999999999 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   4.2e-07   0.00063       4      38 ..      11      45 ..       8      65 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.2e-07
                 EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase  4 ilvgGKGGVGKttvsaatavklsekgkkvllistD 38
                 ++++GKGGVGK++v   +a+ l+++g++v ++  D
   KKY22642.1 11 LVLSGKGGVGKSSVTLQLALALTDQGYNVGILDID 45
                 689************************99888776 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   4.1e-06    0.0061      33      70 ..      12      49 ..       5      57 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.1e-06
                EEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE----- CS
        MeaB 33 GltGvPGaGkstlvealglelrrrGkrvavlavDPssp 70
                 l G  G+Gks ++ +l+l l+++G+ v++l +D + p
  KKY22642.1 12 VLSGKGGVGKSSVTLQLALALTDQGYNVGILDIDLTGP 49
                57899****************************96544 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   9.2e-06     0.014      36      60 ..      11      36 ..       6      52 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.2e-06
      AAA_25 36 allaGapgtGKttlaldlalava.tG 60
                 +l G +g+GK+ ++l+lala++ +G
  KKY22642.1 11 LVLSGKGGVGKSSVTLQLALALTdQG 36
                589******************99665 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2   0.00045      0.67       5      33 ..      12      40 ..       8      42 .. 0.86
   2 ?    2.9   0.0     0.055        83     160     191 ..     189     226 ..     185     267 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00045
      AAA_26  5 vtgtdtgvGKTvvslgLvralkrkgvkvg 33
                v +   gvGK++v+l L+ al+++g++vg
  KKY22642.1 12 VLSGKGGVGKSSVTLQLALALTDQGYNVG 40
                5555679*******************998 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.055
      AAA_26 160 lGvilNkvrnp......envetlekksgipvlGvvPyl 191
                 +G ++  ++++      ++  +++ k++ipvlGv+++ 
  KKY22642.1 189 MGAVVVTTPQAistsdvRKELNFCVKTSIPVLGVIENM 226
                 55555554444444433355556666667777776654 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.8e-05     0.041       4      38 ..      11      44 ..       9      74 .. 0.86
   2 ?   -3.5   0.0       3.8   5.6e+03     115     130 ..     138     153 ..     122     163 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.8e-05
    CBP_BcsQ  4 lalqGvRGGvGttsllaaLawalhelgesvlviDl 38
                l+l+G +GGvG++s++  La al  +g++v ++D+
  KKY22642.1 11 LVLSG-KGGVGKSSVTLQLALALTDQGYNVGILDI 44
                67777.8**********************977765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.8
    CBP_BcsQ 115 qyrwillDlpagasal 130
                 + +++l+D p g+s+ 
  KKY22642.1 138 NTDFLLVDTPPGTSDE 153
                 5577888888877654 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   6.6e-05     0.099      25      51 ..       9      35 ..       3      58 .. 0.85
   2 ?   -3.0   0.0       5.4   8.1e+03      37      88 ..     122     132 ..      93     169 .. 0.63
   3 ?   -2.5   0.0         4   5.9e+03      95     129 ..     288     320 ..     254     326 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.6e-05
      AAA_16 25 elvllsGesGvGKsslvrellralekd 51
                 +++lsG  GvGKss+  +l+ al+++
  KKY22642.1  9 VCLVLSGKGGVGKSSVTLQLALALTDQ 35
                689**************9999888887 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.4
      AAA_16  37 Ksslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde 88 
                 K++++r++                                         l++
  KKY22642.1 122 KTAMIRQF-----------------------------------------LSD 132
                 33333333.........................................333 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 4
      AAA_16  95 eawrekleealaavpelagaea.....srllellkrll.al 129
                 +   ++ ++ l         e+      rl++ ++ ++ +l
  KKY22642.1 288 NIVTQTDDRILV--------ERwksqcARLADIFTGFVhQL 320
                 333333333322........113333456666666666444 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   3.6e-05     0.054       3      39 ..       9      45 ..       7      63 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.6e-05
                EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHH CS
  APS_kinase  3 vvvwltGlsgsGKstianalekkLvekgisvylLdGd 39
                v++ l+G  g GKs+++ +l+ +L+++g++v +Ld d
  KKY22642.1  9 VCLVLSGKGGVGKSSVTLQLALALTDQGYNVGILDID 45
                6889******************************976 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00031      0.47      48      78 ..       9      39 ..       5      50 .. 0.90
   2 ?   -0.7   0.0      0.68     1e+03      42      70 ..     134     162 ..     118     171 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00031
   IstB_IS21 48 enivllGpsGvGKshlaialgveavraglsv 78
                 ++vl G  GvGKs ++  l+ +   +g++v
  KKY22642.1  9 VCLVLSGKGGVGKSSVTLQLALALTDQGYNV 39
                589*************************998 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.68
   IstB_IS21  42 sfiekkenivllGpsGvGKshlaialgve 70 
                  +  + + +++  p+G+   h+aia   +
  KKY22642.1 134 LWPPNTDFLLVDTPPGTSDEHIAIAEELH 162
                 46666777788899*********996555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 1974.46
//
Query:       KKY22643.1  [L=674]
Description: hypothetical protein UCRPC4_g03261 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-23   82.1   0.1    4.9e-23   81.2   0.1    1.4  1  Abhydrolase_4  TAP-like protein
    9.3e-20   71.3   0.0    9.9e-17   61.4   0.0    2.3  2  Abhydrolase_1  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.017   14.4   0.0      0.047   12.9   0.0    1.7  1  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.1   8.1e-27   4.9e-23       3     101 ..     527     626 ..     524     632 .. 0.93

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 8.1e-27
  Abhydrolase_4   3 vfgaalaesllsCagwpvspqrprdestakg.aapvLllqnerDpaTPyegakklakalggavlvtvegeGHgalaagntCvdkavdaYLltGelp 97 
                    ++g+ +a+++l C gw ++ +++ ++    + a+p L+++n+ D +TP + a+k+a +++g+v++ ++ eGH++++a++ C  ++v++Y++tG lp
     KKY22643.1 527 AIGDSWAHTRLGCVGWNAKAKWNLEKPVSGQpAHPLLFIGNTLDTVTPIRNARKMALQFPGSVVLEQKAEGHCSFTAPSICTANHVKKYFQTGVLP 622
                    589********************9998874437*************************************************************** PP

  Abhydrolase_4  98 addt 101
                    ++d 
     KKY22643.1 623 QEDG 626
                    9764 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   1.6e-20   9.9e-17       1     106 [.     136     346 ..     136     373 .. 0.88
   2 !    7.5   0.0   0.00046       2.8     189     252 ..     543     600 ..     529     602 .. 0.81

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 1.6e-20
                    SEEEEE-STTTCGGG....GTTGHHHHHHHHT.............TSEEEEEEETTSTTSSSTTTGB.CHH......................... CS
  Abhydrolase_1   1 pvlvilhGlpgssdv....waerglapaLakd.............gfdvillDlrGvgySspapacinddy......................... 54 
                    +++vi +G+pg+s+v    w ++ +++  + +              fdvi++D+rGv  ++pa +c +d y                         
     KKY22643.1 136 GAIVIEPGGPGGSGVglqmWLGPEIQYVVDSSadptqtsvdlqdkYFDVIGFDPRGVNNTTPAVSCFPDAYsaqtwqvetqaegilgssnhslhnn 231
                    589********8888888855555555555445555566666666**********************988899999999999************** PP

                    ...............................................................SHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHH CS
  Abhydrolase_1  55 ...............................................................gtasvaddldrildalgddkltlvGhSmGGmia 87 
                                                                                   g  +  ++l+r + + g ++l ++G+S+G+ i+
     KKY22643.1 232 wrraralaegcsdrlleledgeaigehintvpvvedivqmierhgewrekqaakehqtyakinGQEAADAMLERTKWKKGEENLLYWGFSYGTVIG 327
                    ***************************************************************9999***************************** PP

                    HHHHHHHGGGEEEEEEESE CS
  Abhydrolase_1  88 layaaeyperVkalvllga 106
                    +++aa++p+r+ ++vl+g 
     KKY22643.1 328 ATFAAMHPDRIERMVLDGV 346
                    ******************9 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00046
                    HHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSH CS
  Abhydrolase_1 189 ieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHla 252
                       ++++++ ++ ++         p l+i+ t D ++p+++ +++a ++p++ ++    +gH++
     KKY22643.1 543 NAKAKWNLEKPVSGQPAH------PLLFIGNTLDTVTPIRNARKMALQFPGSVVLEQKAEGHCS 600
                    556778888889999999......***************************5555555566665 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.9e-06     0.047      63     108 ..     300     345 ..     296     398 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.9e-06
  Hydrolase_4  63 aafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsa 108
                  +a++e+ k +++e++l  +G S G +i +++++++pd++++++l +
   KKY22643.1 300 DAMLERTKWKKGEENLLYWGFSYGTVIGATFAAMHPDRIERMVLDG 345
                  67889999999999*****************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 4291.09
//
Query:       KKY22644.1  [L=313]
Description: putative nad dependent epimerase dehydratase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-50  169.2   0.0    1.2e-49  168.9   0.0    1.0  1  RmlD_sub_bind    RmlD substrate binding domain
    3.8e-23   82.2   0.0    4.9e-23   81.8   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
      3e-09   36.7   0.8    5.2e-08   32.7   0.7    2.1  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    1.7e-08   33.9   1.1    2.2e-05   23.8   0.1    3.3  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
    4.4e-08   32.6   0.7    0.00013   21.3   0.0    2.4  2  NAD_binding_4    Male sterility protein
    1.5e-07   30.7   0.3    5.7e-06   25.5   0.3    2.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
  ------ inclusion threshold ------
      0.077   13.1   0.0       0.13   12.3   0.0    1.4  1  Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation dom
       0.18   11.9   0.0       0.38   10.8   0.0    1.5  1  Cro              Cro


Domain annotation for each model (and alignments):
>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.9   0.0   5.6e-53   1.2e-49       2     268 ..       4     302 ..       3     309 .. 0.88

  Alignments for each domain:
  == domain 1  score: 168.9 bits;  conditional E-value: 5.6e-53
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT........T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre........eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnaeavealAeaa 89 
                    k+lvtGa+G lG+++++q++ +g+ v++++ +        ++dlt ae v+e+l+++kp+v+v++AA ++ D + +++ aa a+n++a+  l  + 
     KKY22644.1   4 KVLVTGATGFLGRAVVDQFDLAGWFVTGTGFSrasppktlKVDLTIAEDVEEVLDDVKPEVIVHCAADRQPDSCSNNPSAAKAINVTATSILTSLS 99 
                    79*************************9965557************************************************************** PP

                    HHCT-EEEEEEEGGGS-S-.TTS-B-TTS----SSHHHHHHHHHHHHHHH......H-SSEEEEEE-SEESS......SSS-HHHHHHHHH...HH CS
  RmlD_sub_bind  90 aavgalLihvStDyVFdGe.kkrpYeeddetsPlnvYGrtKlaGEqavla......agkkalivRtswvyge......kgknfvktmlrla...ke 169
                    +++ ++Li++StDyVF G   + pY++++++sP nvYG+ Kl+GE++ l+      a+  ++++R++++yg+      ++++ v+++l+ +   +e
     KKY22644.1 100 TRRSIFLIYLSTDYVFSGLpGEAPYSTTSTPSPTNVYGELKLEGEKVALStasgnsANGSVIVLRVPVLYGKtepidnNKESAVNVLLDAVykaAE 195
                    ******************956677**********************998877777778899**********9889888777888888775433244 PP

                    -..SEEEEESS-EE--EEHHHHHHHHHHHHHHCHH.GGG.....-EEEE---BS-EEHHHHHHHHHHHHCHTTSEEEEE-C.CCS--SS---SBE- CS
  RmlD_sub_bind 170 r..eelkvvaDqlgsPTsardlAevllqllekaaeekel.....agvyHlanegetswlefArailkeagadseevkpist.aeyptpAkRPanSv 257
                    +   ++++ ++ l+ PT ++d+ +v+ +++ek ++ +        +++H+++e++ +++e+ +  ++ +g++   +k+ ++ ++ + +A+RP ++ 
     KKY22644.1 196 NpsANISMDDWALRYPTNVEDVGRVCKDIAEKYTSVSVEertslPKILHFSSEDKFTKYEICELLAEILGVSLDGMKANKEgNDPNSKAQRPYDAH 291
                    4115688889999*****************997753322344569**************************99999988772456679******** PP

                    B--HHHHHCCT CS
  RmlD_sub_bind 258 Ldtekleatfg 268
                    L te+l++ ++
     KKY22644.1 292 LGTEELKSLGI 302
                    ******99854 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   2.2e-26   4.9e-23       1     228 [.       5     227 ..       5     238 .. 0.82

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 2.2e-26
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnll 99 
                 +lVtGatGf+G+a+v+++  +g+ v+g    + + +       +  ++dlt ++++e+++++++p++++h+Aa   ++  s++p++   +n+  t  l 
  KKY22644.1   5 VLVTGATGFLGRAVVDQFDLAGWFVTGTGFSRASPP-------KTLKVDLTIAEDVEEVLDDVKPEVIVHCAADRQPDSCSNNPSAAKAINVTATSILT 96 
                 79********************77777666633444.......4569**************************************************** PP

                 HHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH..T-EEEEEEESEEESTT....S-TTSTTSHHHHHHHH CS
   Epimerase 100 eaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqy..glnaiilrlfnlyGpr....ngegevsrvipalirk 192
                 + + ++ +  l++ls++ v+   +   +  ++ t+   p++ Y+  Kl gek++ + a  +  + ++i+lr+  lyG+     n +++  +v+  ++ k
  KKY22644.1  97 SLSTRRSI-FLIYLSTDYVFSGLPG--EAPYSTTSTPSPTNVYGELKLEGEKVALSTASGNsaNGSVIVLRVPVLYGKTepidNNKESAVNVLLDAVYK 192
                 ********.9***********8888..34444444679**************99887766533689*************99954444477777777777 PP

                 HHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHH CS
   Epimerase 193 ilegkqevtllgdgtalRdflyveDvaeaillvleh 228
                 ++e+  +  +  d  alR    veDv +++  ++e+
  KKY22644.1 193 AAENP-SANISMDDWALRYPTNVEDVGRVCKDIAEK 227
                 77776.555555667777777777777766666665 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.7   2.3e-11   5.2e-08       1     163 [.       6     146 ..       6     162 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 2.3e-11
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L+TG +Gf G  +++++   g  v+g+       +  r +              k  k+Dlt ++ +e++l++v+p+ +++ AA    d   ++P 
     KKY22644.1   6 LVTGATGFLGRAVVDQFDLAGWFVTGTGF-----S--RASP------------PKTLKVDLTIAEDVEEVLDDVKPEVIVHCAADRQPDSCSNNPS 82 
                    78999999999999888888888888522.....1..2211............235789************************************* PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG.-S-SSSSB-TTS-----SHHHHHHHHHHHH CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvY.GkvqevpqtEttpfyPrsPYaaaKlyadwi 163
                    +   +nv++t  L  +  +    +++ ++  St+ v+ G + e+p++ t   +P++ Y+  Kl  + +
     KKY22644.1  83 AAKAINVTATSILTSLSTR----RSIFLIYLSTDYVFsGLPGEAPYSTTSTPSPTNVYGELKLEGEKV 146
                    ********99887776644....5688999*******88899******************99987766 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0     0.004       9.1       1      18 [.       5      22 ..       5      25 .. 0.93
   2 !   23.8   0.1   9.7e-09   2.2e-05      63     156 ..      47     154 ..      41     172 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.004
                     EEEETTTSHHHHHHHHHH CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqi 18
                     vlvtGa+G +G+++v+q+
       KKY22644.1  5 VLVTGATGFLGRAVVDQF 22
                     8*************9986 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 9.7e-09
                      TT-HHHHHHHTT..T-SEEEE------HHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGGGS...............S--SHHHHH CS
  Polysacc_synt_2  63 vrdkerlekaleelkvdvvfhaAAlKhVPlveenpleaiktNvlgtenvieaaieagvkkvvliStDKAv...............nPtnvmGat 141
                      ++ +e +e++l+++k++v++h+AA ++   + +np  a   Nv++t+ + + +++  +  ++++StD                  +Ptnv+G  
       KKY22644.1  47 LTIAEDVEEVLDDVKPEVIVHCAADRQPDSCSNNPSAAKAINVTATSILTSLSTRRSIF-LIYLSTDYVFsglpgeapysttstpSPTNVYGEL 139
                      5567899**********************************************999985.8999999653111222122222222577777777 PP

                      HHHHHHHHHHGGG-- CS
  Polysacc_synt_2 142 Krlaekllqalakes 156
                      K+  ek++ ++a+ +
       KKY22644.1 140 KLEGEKVALSTASGN 154
                      777777766666555 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00025      0.56       1      14 [.       7      20 ..       7      22 .. 0.89
   2 !   21.3   0.0   5.6e-08   0.00013      79     215 ..      51     177 ..      44     204 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00025
                   EE-TTSHHHHHHHH CS
  NAD_binding_4  1 lTGaTGFLGkvLle 14
                   +TGaTGFLG+ ++ 
     KKY22644.1  7 VTGATGFLGRAVVD 20
                   7*********9986 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 5.6e-08
                    HHHHHHHHH-..-EEEE--SS-S.ST...TSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEET CS
  NAD_binding_4  79 edlqelaeev..dviihsaAtvnfde...pykellrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederakl 169
                    ed++e+ + v  +vi+h+aA+ + d+   + + ++++Nv++t  + +l++++ +   l++ ST yv     ge                  + ++ 
     KKY22644.1  51 EDVEEVLDDVkpEVIVHCAADRQPDScsnNPSAAKAINVTATSILTSLSTRR-SI-FLIYLSTDYVFSGLPGE---------------APYSTTST 129
                    56666666663369********988833345569**************9944.55.8******9999888864...............33457788 PP

                    TTCCCHHHHHHHHHHHHHHHHHHHH---..EEEEEE-EEE--SSST-- CS
  NAD_binding_4 170 kglpntYeqsKalaEklvrearrrsglp..vvivRpsiitgesktGwi 215
                     + +n Y   K ++Ek+  ++++ +  +  v+++R+++++g++++   
     KKY22644.1 130 PSPTNVYGELKLEGEKVALSTASGNSANgsVIVLRVPVLYGKTEPIDN 177
                    8999*************99888554333448999*****997777333 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.3   2.5e-09   5.7e-06       1     192 [.       6     179 ..       6     204 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 2.5e-09
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvag...kltedeimkvnvkGT 96 
                 +vtG++GFlGra+v ++  ++  + v               s+    k++++D+t ++++ee+l++v+  + ++++ d +      +      +nv  T
  KKY22644.1   6 LVTGATGFLGRAVVDQFDLAG--WFVTGTGF----------SRASPPKTLKVDLTIAEDVEEVLDDVKPEVIVHCAADRQPdscSNNPSAAKAINVTAT 92 
                 699********9999987777..44443333..........33334457899***************86555556655543213456667888999999 PP

   3Beta_HSD  97 rnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdkllvpl 192
                   + +  ++ ++ +l+Y S+ + v+    ge+      +++  ++++++y e K   Ek+ l++   +  ng     + LR  ++yG  ++   + 
  KKY22644.1  93 SILTSLSTRRSI-FLIYLST-DYVFSGLPGEAPY----STTSTPSPTNVYGELKLEGEKVALSTASGNSANG---SVIVLRVPVLYGKTEPIDNNK 179
                 988888888888.89***98.5566646666555....7888899***************998877677777...7789********988765554 PP

>> Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.8e-05      0.13      88     154 ..     148     219 ..     122     249 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.8e-05
                      CTESC....SEEEEEEEESBSSEEEEEEEEEES.SSHHHHHHHHHHHHCSTTEEEEESS.HCHHSSHHHHTTC CS
  Semialdhyde_dhC  88 lefte....kvsatcvrVPvlrGhseavtiklk.lkdveveeveellaaapevkvvvne.eedrPtpaavagg 154
                      l++ +    + s ++ rVPvl+G +e +    + + +v +++v+++ ++ p++ +  ++   ++Pt ++++g+
       KKY22644.1 148 LSTASgnsaNGSVIVLRVPVLYGKTEPIDNNKEsAVNVLLDAVYKAAEN-PSANISMDDwALRYPTNVEDVGR 219
                      4433332123448999***********9887753444444555554444.7********999****9999984 PP

>> Cro  Cro
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00017      0.38      18      42 ..      83     107 ..      80     112 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
                 HHHHHTS-HHHHHHHHHCT-EEEEE CS
         Cro  18 tAkdlgvkqsaIsKAlkakRnIyli 42 
                 +Ak+++v+ ++I   l  +R I+li
  KKY22644.1  83 AAKAINVTATSILTSLSTRRSIFLI 107
                 8**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2167.76
//
Query:       KKY22645.1  [L=350]
Description: putative cysteine synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-67  225.8   0.2    9.2e-67  225.5   0.2    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.5   0.2   5.1e-71   9.2e-67       4     294 .]      11     315 ..       9     315 .. 0.90

  Alignments for each domain:
  == domain 1  score: 225.5 bits;  conditional E-value: 5.1e-71
                 CSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTT...TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHH CS
        PALP   4 gigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkeg...tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrl 99 
                 +ig+TPl+rl rls+e+g++++ K E+ np+gS+KdR+a y++ +++e    +++ tvve+++GN+g++lA++++  G+k++i++p++ s++k++llrl
  KKY22645.1  11 AIGNTPLIRLTRLSEETGCNILGKAEFQNPGGSVKDRAALYVVRDAEERgllKPGGTVVEGTAGNTGIGLAHVCRSKGYKLVIYMPNTQSQGKIDLLRL 109
                 69*******************************************88888************************************************* PP

                 TT-EEEEE.......CCHHH.HHHHHHHHHHHH.STTCEE--TTTSHHHHHH.HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHH.HSTT-EE CS
        PALP 100 lGaevvev.......ggdyd.eavaaaaelaae.gegaylvsqfdnptvieg.ygtiglEileqlggkpdavvvpvGgGgliaGiaaglke.rrpdvrv 187
                 lGaev  v       +++y+ +a+++a+++aa+ + ga++++qfdn+++  +  +t+g+Ei++q+ gk+da+v+++G+Gg++aG+ ++lk+ ++  v++
  KKY22645.1 110 LGAEVYPVpavafenPDNYNwQAKRHAERVAASsSAGAVWTNQFDNVANRRAhIETTGPEIWSQTSGKVDAFVCATGTGGTLAGTTRFLKDvSNNRVKC 208
                 ********888888844444166666888888889********************************************************77777*** PP

                 EEEEECTTCGGTTCCS..S.SS..B.SSS.CCSTCS.CGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHCCTTC CS
        PALP 188 igvepegsdalarslragrrvtvpvsdtiadglavg.spselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaalklreagelkeg 285
                 + ++p   + l+++++ g  +t  ++++i +g++ g + s+la ++  +l +    ++d + +e++ +   +eg+ ++ ssa ++ a+  + a+++ ++
  KKY22645.1 209 YLADPP-GSVLHSYIQSGGKLTERTGSSITEGIGQGrVTSNLAPDIS-DLDG-SLNIPDTQSIEMVYRCLDEEGLYLGASSALNVVAA-KQVAEQFCGK 303
                 *****8.778899999********************55555555555.5555.899********************************.4444444444 PP

                 ...EEEEEEE-B CS
        PALP 286 ...drvvviltg 294
                    ++vv++l++
  KKY22645.1 304 gsrKTVVTMLCD 315
                 477799999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2272.36
//
Query:       KKY22646.1  [L=689]
Description: putative glucosamine--fructose-6-phosphate aminotransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-59  199.8   0.0    6.1e-32  110.2   0.0    2.3  2  SIS       SIS domain
    9.4e-16   58.2   0.0    1.9e-15   57.2   0.0    1.4  1  GATase_6  Glutamine amidotransferase domain
    1.9e-09   37.4   0.0    4.5e-09   36.3   0.0    1.5  1  GATase_7  Glutamine amidotransferase domain
  ------ inclusion threshold ------
      0.076   11.9   0.0       0.12   11.2   0.0    1.3  1  GATase_4  Glutamine amidotransferases class-II


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.0   1.4e-35   6.1e-32       2     129 ..     371     497 ..     370     499 .. 0.98
   2 !   87.4   0.0   1.5e-28   6.9e-25       4     129 ..     544     670 ..     541     671 .. 0.96

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 1.4e-35
                 HCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSE CS
         SIS   2 LakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadl 100
                 ++ ++r++++++Gtsy++++  +  +ee+g+ + +ve+as++ ++  ++i +dd+++++s+sget+d+++a++++ erga +++I +  gs++++ +++
  KKY22646.1 371 IRRCRRLIFIACGTSYHSCMATRGVFEELGELPISVELASDFLDR-SPPIFRDDVCVFVSQSGETADSLLALRYCLERGALTVGIVNVVGSSISQLTHC 468
                 789******************************************.***************************************************** PP

                 EEEEEEECHCSSSHCHHHHHHHHHHHHHH CS
         SIS 101 alyinaepetlvastksltaqlaaldala 129
                  +++na+pe++vastk++t+q++al ++a
  KKY22646.1 469 GVHVNAGPEIGVASTKAYTSQFVALVTFA 497
                 ************************99987 PP

  == domain 2  score: 87.4 bits;  conditional E-value: 1.5e-28
                 TSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHH.HHHHTTSEEEEEESSTTSHHHHHSSEE CS
         SIS   4 kakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaae.lakergakiiaITdskgsplareadla 101
                  +k++++lG+G ++++a+e+alk++ei++ ++e++ ++elkhgvlal+de  ++i+i ++++ + + ++a  ++++r +++i+I++s +    +e  + 
  KKY22646.1 544 GQKSMLLLGRGLQFPTALEGALKIKEISYLHCEAVMSGELKHGVLALVDEHLPIIMIQTRDNLFTKSMNAYqQVTARAGRPIVICNSGDKEFPQEKNER 642
                 5899**************************************************************999999************************999 PP

                 EEEEEECHCSSSHCHHHHHHHHHHHHHH CS
         SIS 102 lyinaepetlvastksltaqlaaldala 129
                 ++++    +l+++++++++ql+++++++
  KKY22646.1 643 IEVPHTIDVLQGLLNVIPLQLMSYWLAV 670
                 998888888****************986 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   4.3e-19   1.9e-15       9     103 ..      75     182 ..      66     209 .. 0.79

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 4.3e-19
    GATase_6   9 lvedevalaHvRlaivglaeeegaqPf.psedgrlllvhNGeiynykelreelpalkglafrsrsDtevllall.......eelG.......eevlerl 92 
                  ++++v++aH+R+a++g + +  ++P  + ++ ++++vhNG i nykel++ l+ ++g++f++++Dte +++l+                  ++ +++l
  KKY22646.1  75 CYTNQVGIAHTRWATHGPPSRLNCHPHrSDPTWEFSVVHNGIITNYKELKAFLEIKAGAKFETETDTECIAKLAkylydseP--TldfvslaKAIVREL 171
                 56889**************77777***8888889**************************************9966766552..044666636666999 PP

    GATase_6  93 rGmfafaiwdk 103
                 +G+f++ + ++
  KKY22646.1 172 QGAFSILLKSS 182
                 99998876655 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0     1e-12   4.5e-09      20      94 ..     105     193 ..      94     208 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 1e-12
    GATase_7  20 edgrlvivfnGeiyNykelreeLe.akghrfrtksDtevllallea...........ewgeealerlnGmfAfaiwdeeek..rlllaR 94 
                  + ++ +v+nG i+Nykel++ Le ++g +f+t++Dte +++l ++              ++++++l+G f++++  +++   + ++aR
  KKY22646.1 105 PTWEFSVVHNGIITNYKELKAFLEiKAGAKFETETDTECIAKLAKYlydseptldfvSLAKAIVRELQGAFSILLKSSAHFpgECIAAR 193
                 455789*****************95569**************9999**********9999*************9987665333666666 PP

>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.7e-05      0.12      72     118 ..      79     124 ..      68     184 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.7e-05
    GATase_4  72 knvvaHiRkatqGevklenthpFvRelwgrewifAHnGdlkeykpkl 118
                 ++ +aH R at+G  +  n+hp  R+    e+   HnG +++yk+  
  KKY22646.1  79 QVGIAHTRWATHGPPSRLNCHPH-RSDPTWEFSVVHNGIITNYKELK 124
                 5669******************6.66667777888*****9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 4290.28
//
Query:       KKY22647.1  [L=559]
Description: hypothetical protein UCRPC4_g03265 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-77  260.1   0.4      2e-77  259.6   0.4    1.2  1  Glyco_hydro_114  Glycoside-hydrolase family GH114


Domain annotation for each model (and alignments):
>> Glyco_hydro_114  Glycoside-hydrolase family GH114
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.6   0.4   1.1e-81     2e-77       1     232 []     311     545 ..     311     545 .. 0.97

  Alignments for each domain:
  == domain 1  score: 259.6 bits;  conditional E-value: 1.1e-81
  Glyco_hydro_114   1 twqyqlqgpletspdavdvydiDlfdtsaatiaalkakgkkviCYfsaGevedwrpdaddfnpasvlgkkldgWpgerwldirtaakrsskvrs 94 
                      tw++ql++++  ++ +++vydiDlfdt+a+ti+++++ g++v+CYfsaG+ e+wr+da++f pa+++g++l gW+ e +ldir     sskvr+
       KKY22647.1 311 TWEIQLSSQVAHPTYTTAVYDIDLFDTPASTIEQMHNLGRRVVCYFSAGTLEKWRTDAKEF-PADAIGEDLAGWDEESYLDIR-----SSKVRQ 398
                      7********99997769********************************************.*********************.....99**** PP

  Glyco_hydro_114  95 imkaridlaaakGfdgvepDnvDsyesndtgflltaadqlayvkflaaeaharglaiglknageliselvdafdfavnEecaeyseCdtyepfi 188
                      im++ri+la+ kG+dgv+pDnvD+y+sn tgf+lta+d++ y+kfla+eah r l+iglkna+ +++++++++d+a++E+c+ y+eCd y+++i
       KKY22647.1 399 IMAKRIALAKTKGCDGVDPDNVDAYASNATGFRLTASDAVGYLKFLADEAHDRLLSIGLKNAPLIADQVINDMDWAITESCVPYQECDYYHSYI 492
                      *************************9888***************************************************************** PP

  Glyco_hydro_114 189 aagkpVfhiEYp...........vsaaedaaacaaasraagfstvvkdldLddkw 232
                      +ag +Vfh+EY            + +    +ac+  ++++ fst+vk+ +L d+w
       KKY22647.1 493 EAGRAVFHLEYVdgsaqpinqtfSVEDVLHTACN-GAGTNLFSTLVKKTSL-DEW 545
                      ******************9999877888899999.99999**********9.565 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.52
# Mc/sec: 3220.07
//
Query:       KKY22648.1  [L=711]
Description: putative extracellular serine-rich [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   12.2   1.4       0.57   10.2   1.0    2.1  2  Ogr_Delta  Ogr/Delta-like zinc finger


Domain annotation for each model (and alignments):
>> Ogr_Delta  Ogr/Delta-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.14   2.5e+03       9      30 ..      87     108 ..      84     110 .. 0.76
   2 ?   10.2   1.0   3.2e-05      0.57      21      33 ..     471     483 ..     466     490 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.14
   Ogr_Delta   9 aaartsrnlskdvreryyqCsn 30 
                 +   ++ + s  + e+y  C+n
  KKY22648.1  87 MIQLNVYPSSDFGVELYKACNN 108
                 55556667788899******99 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 3.2e-05
   Ogr_Delta  21 vreryyqCsnfeC 33 
                 ++++yy+C+n+eC
  KKY22648.1 471 STRIYYNCDNMEC 483
                 789********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 4499.34
//
Query:       KKY22649.1  [L=449]
Description: putative gal10 bifunctional protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-31  107.5   0.0    1.5e-30  106.4   0.0    1.5  1  Epimerase        NAD dependent epimerase/dehydratase family
      1e-30  107.3   0.0    2.9e-30  105.8   0.0    1.7  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    1.6e-07   30.6   0.0    4.2e-07   29.3   0.0    1.6  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    7.4e-07   28.6   0.0    1.4e-06   27.7   0.0    1.3  1  NAD_binding_4    Male sterility protein
    8.7e-05   21.8   0.0    0.00059   19.1   0.0    2.1  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
  ------ inclusion threshold ------
       0.13   11.3   0.0        0.3   10.2   0.0    1.5  1  RmlD_sub_bind    RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.0   5.2e-34   1.5e-30      64     228 ..      32     216 ..      25     225 .. 0.89

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 5.2e-34
                 T-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSS..SSBSTCSTTS--.....--SSHHHHHHHHHHHHHHH CS
   Epimerase  64 qpdavihlAavggvaassedpadfieknlqgtlnlleaarkagvkrllflsSsevYGkdae..qpkeettltgpl.....kpnspYaaaKlageklvea 155
                 ++ avih+Aa + v++s+++p +++++n+ g lnllea+++ +v+r++f sS+ vYG ++e  +  e++++ g         ++pY+++K ++e+++ +
  KKY22649.1  32 RIIAVIHFAALKAVGESVSKPLQYYRNNIGGLLNLLEAMSRFKVNRIVFSSSAVVYGSGKEanI-SEDSVQVGGKgsgggLVTNPYGRSKWMAEEILND 129
                 5679*******************************************************99543.333333222234566789**************** PP

                 HHHHH.T-EEEEEEESEEESTT.......S-TTSTTSHHHHHHHHHHTTSSSEEEET......TST-EEEEEEHHHHHHHHHHHHHH CS
   Epimerase 156 yaaqy.glnaiilrlfnlyGpr.......ngegevsrvipalirkilegkqevtllg......dgtalRdflyveDvaeaillvleh 228
                 y  ++ ++++i+lr+fn  G +       +++g +++++p +++  ++++ +v ++g      dgt +Rd+++veD+a+++l++l+ 
  KKY22649.1 130 YCIANpEFECISLRYFNPTGSHpsgligeDPKGIPNNIVPVILQTYQRRRSKVYVYGsnydtaDGTGVRDYIHVEDLARGHLAALRS 216
                 *****9*********************9888888******77777777779*********************************987 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.0   9.7e-34   2.9e-30      76     331 ..      33     321 ..      29     322 .. 0.74

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 9.7e-34
                    -SEEEE--S---HHHHTTSHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS----.........-SHHHHHHHHHHH CS
  GDP_Man_Dehyd  76 pdevynLAAqshVdvsfekPeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfyP.........rsPYaaaKlyadw 162
                    + +v+++AA ++V++s++kP +++++n+ G l+LLea+ + +++   r++++S++ vYG+ +e+ ++E+              ++PY+ +K +a+ 
     KKY22649.1  33 IIAVIHFAALKAVGESVSKPLQYYRNNIGGLLNLLEAMSRFKVN---RIVFSSSAVVYGSGKEANISEDSVQVGgkgsggglvTNPYGRSKWMAEE 125
                    668*************************************9875...9********************977665566777777************* PP

                    HHHHHHHHH---.EEEEEE-E....EESTTS-TT..SCCCHHHHHHHHHHTTS.-C-EECTTTT-......EEEEEEHHHHHHH....HHHHHHCS CS
  GDP_Man_Dehyd 163 ivvnyreayglf.avngilfn....hesprrget..fvtrkitravarialgk.qevlylGnlda......kRdwghvkDyvea....mwlmlqqd 240
                    i  +y  a   f +++ ++fn    h s   ge+   + ++i++++ ++ + +  +v+++G  +       +Rd+ hv+D +++    ++ +l + 
     KKY22649.1 126 ILNDYCIANPEFeCISLRYFNptgsHPSGLIGEDpkGIPNNIVPVILQTYQRRrSKVYVYGSNYDtadgtgVRDYIHVEDLARGhlaaLRSLLTAP 221
                    ******998876155689***9999999999996558999******99999883456667976661111115666666665554333344455555 PP

                    S---EEE-TT-EEECHHCHHCCHHCCC..HHHHHH........................TTGGCCCEECGG--SS--SB--B-THHHHHHH----S CS
  GDP_Man_Dehyd 241 kpedyviatgethsvrefvelaflelg..ktiewegkgeeevg............rakesgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpk 322
                    + +  v+a+g + +     + +++++   +++        + g            + ++   +++++     r g+   + + ++ka +eLgW+++
     KKY22649.1 222 EDRCSVLANGIESEASAETDGENASMSvaENYRVY-----NLGtghgysvldiinAFAKACGTEIPFAIGEARSGDLGIVTASTQKAATELGWQAQ 312
                    55557777776655433333332222200222221.....111223333333333344556678******************************** PP

                    S-HHHHHHH CS
  GDP_Man_Dehyd 323 vsfeelvre 331
                    +++++++r+
     KKY22649.1 313 FDIQDMCRD 321
                    *******97 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.4e-10   4.2e-07      69     234 ..      35     219 ..      27     230 .. 0.70

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 1.4e-10
   3Beta_HSD  69 vvihlaslvdvag.kltedeimkvnvkGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyesl......hqdaypesKalaEklvlka 160
                 +vih a+l  v   + +  ++++ n+ G  n+lea  +  v+++v+ Ssa v g     +e   ++++ ++  +       +++y +sK +aE+++   
  KKY22649.1  35 AVIHFAALKAVGEsVSKPLQYYRNNIGGLLNLLEAMSRFKVNRIVFSSSAVVYGSG---KEANISEDSVQVGGKgsggglVTNPYGRSKWMAEEIL--- 127
                 79*********985777889*****************************9999872...22222333333333223344499************87... PP

   3Beta_HSD 161 NgrtlknggrlyTcaLR........pagiyGegdk....llvpllkql.aklglalfkig......deevlsdrvYvgNvawahilAaralqd 234
                 N+  + n+ ++  ++LR        p+g+ Ge  k     +vp++ q+  + + +++ +g      d   + d++ v+ +a  h+ A r l+ 
  KKY22649.1 128 NDYCIANP-EFECISLRyfnptgshPSGLIGEDPKgipnNIVPVILQTyQRRRSKVYVYGsnydtaDGTGVRDYIHVEDLARGHLAALRSLLT 219
                 56666666.55555665555555559999**986522224556555540555566666551111115566789999************99875 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   4.5e-10   1.4e-06      89     191 ..      34     131 ..      29     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 4.5e-10
                    -EEEE--SS-S.STTSSE...EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TT.T--SSS-H......HHH--EEEETTTCCCHHHHHH CS
  NAD_binding_4  89 dviihsaAtvnfdepyke...llrvNveGtrevlelakklkklkvllhvSTayvngereg.eveekvyeegekeekldederaklkglpntYeqsK 180
                     ++ih aA   + e++++    +r N+ G  ++le  ++ k +  +++ S+a+v+g  ++ +++e        +    + + + ++ ++n Y +sK
     KKY22649.1  34 IAVIHFAALKAVGESVSKplqYYRNNIGGLLNLLEAMSRFKVN-RIVFSSSAVVYGSGKEaNISE--------DSVQVGGKGSGGGLVTNPYGRSK 120
                    5799****99999999986557899*************99999.9******99888766304444........55679999999999********* PP

                    HHHHHHHHHHH CS
  NAD_binding_4 181 alaEklvrear 191
                    ++aE++++++ 
     KKY22649.1 121 WMAEEILNDYC 131
                    *******9875 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     2e-07   0.00059      79     128 ..      34      83 ..      28      91 .. 0.94
   2 ?   -0.5   0.0      0.18   5.2e+02     135     175 ..     113     151 ..     112     154 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2e-07
                      SEEEE------HHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE CS
  Polysacc_synt_2  79 dvvfhaAAlKhVPlveenpleaiktNvlgtenvieaaieagvkkvvliSt 128
                       +v+h AAlK V    ++pl+  ++N+ g  n++ea  + +v+++v+ S+
       KKY22649.1  34 IAVIHFAALKAVGESVSKPLQYYRNNIGGLLNLLEAMSRFKVNRIVFSSS 83 
                      579*******************************************9886 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.18
                      -SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETTGT CS
  Polysacc_synt_2 135 tnvmGatKrlaekllqalakeseekktkfvvvRfGNVlgSr 175
                      tn +G +K +ae +l  +   +   + + +  R+ N  gS+
       KKY22649.1 113 TNPYGRSKWMAEEILNDYCIAN--PEFECISLRYFNPTGSH 151
                      799***********99887766..56777888888877775 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0001       0.3      54     138 ..      35     129 ..      27     135 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0001
                    EEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-S-TTS-B-TTS---..-........SSHHHHHHHHHHHHHHH CS
  RmlD_sub_bind  54 vvvnaAAytavDkaEseeeaayavnaeavealAeaaaavgalLihvStDyVFdGekkrpYeeddets..P........lnvYGrtKlaGEqavla 138
                    +v++ AA +av +  s++ + y+ n  +  +l ea ++ ++  i  S+  V  G+ k++   +d ++            n YGr+K+  E+  ++
     KKY22649.1  35 AVIHFAALKAVGESVSKPLQYYRNNIGGLLNLLEAMSRFKVNRIVFSSSAVVYGSGKEANISEDSVQvgGkgsggglvTNPYGRSKWMAEEILND 129
                    79***************************************988888888877876666444444431112222222257799999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 2823.87
//
Query:       KKY22650.1  [L=3125]
Description: putative glycosyl transferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-13   50.3   0.0    3.8e-13   49.3   0.0    1.4  1  Glycos_transf_1  Glycosyl transferases group 1
    9.4e-13   48.7   0.1    1.8e-12   47.9   0.1    1.5  1  Glyco_trans_1_4  Glycosyl transferases group 1
    2.7e-07   30.6   0.0    6.6e-07   29.3   0.0    1.6  1  DUF3492          Domain of unknown function (DUF3492)


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   6.4e-17   3.8e-13      11     156 ..    2808    2960 ..    2802    2963 .. 0.95

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 6.4e-17
                       TTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCC.HCSCEEEEEES.....STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEE CS
  Glycos_transf_1   11 knekkkiilsvgrlekeKgvdllikafallkkq.lnpnvklviaG....ngeeekelkklaeelelsdnviflgevsredleellknadifv 97  
                       +++++++ +++++++  K+v+++i+a+  +  +   + ++lv++G    + ++  e ++l+++l+++ +v++ g+ s    + +lk a +f 
       KKY22650.1 2808 IRTEEPTCVMLSNVQFIKDVKNAIQAAGVIVNDfGFKTYNLVVYGaqdrQPSYAVETEELIASLGIGGTVRLGGFGS---PKDVLKDAWLFM 2896
                       678899999********************9988999************999*************************9...8899******** PP

                       EEESSBSS-HHHHHHHHTT--EEEETTTTHCHHCHTTT.....SEEEE-TT-HHHHHHHHHHHH CS
  Glycos_transf_1   98 lpsisEgfGivllEAmaaglpviasnaggpaevvkdge.....tGllvkpnnaealaeairkll 156 
                        +s sEg+++++ EA  ag+p++a+ +g  a+v++d +      G +v pn++ ala+a ++ll
       KKY22650.1 2897 NSSLSEGLPLAIGEAALAGVPIVATEVGATAQVLTDVDdpsirYGEVVSPNDPVALARAQISLL 2960
                       *********************************************************9988887 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.1     3e-16   1.8e-12       2     133 ..    2813    2961 ..    2812    2962 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 3e-16
                       EEEEEES---GG.GTHHHHHHHHHHHH.H...H.EEEEEES---......HHHHHHHT..T-T.TEEEE---THHHHHHHH-SEEEE--..- CS
  Glyco_trans_1_4    2 pvilfvGrleenvkgvdllleavpllrkk...d.vrlvivGdgp.rp...eeleelaa..gleerveftGfvedlaellaaadvfvaPs..e 81  
                       p+ ++++++ + +k v+  ++a+  + ++   + ++lv++G ++ +p    e eel+a  g+  +v++ Gf  + +++l++a++f + s  e
       KKY22650.1 2813 PTCVMLSNV-QFIKDVKNAIQAAGVIVNDfgfKtYNLVVYGAQDrQPsyaVETEELIAslGIGGTVRLGGFG-SPKDVLKDAWLFMNSSlsE 2902
                       667777877.668999999****888866544379******8775446554444455458998889999999.9****************** PP

                       --SHHHHHHHHTT-EEEE-TGGGTTT--...T....TSSEE--TT-HHHHHHHHHHHHH CS
  Glyco_trans_1_4   82 gfglkllEamaaglpvVatdvggiaevv...g....engllvppgdpealaeailrLle 133 
                       g++l++ Ea+ ag+p+Vat+vg++a+v+        + g +v+p+dp ala+a + Ll+
       KKY22650.1 2903 GLPLAIGEAALAGVPIVATEVGATAQVLtdvDdpsiRYGEVVSPNDPVALARAQISLLA 2961
                       *********************9889988844134445588*************999985 PP

>> DUF3492  Domain of unknown function (DUF3492)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.1e-10   6.6e-07       9     266 ..    2485    2775 ..    2478    2777 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 1.1e-10
     DUF3492    9 GTYPyvsGGVSsWvhqlitklpeveFavlfigsdeeeygelkyelPenVveveevylveeeeaskapa............srkgekaaaetleelle 93  
                  G++P + GGVS+   +l+ + + ++   +++++   + + +++++  nV+ v++++l+   ++++  +            +r + +   + +e ++ 
  KKY22650.1 2485 GCWPDAPGGVSNCRRDLVDGHKTIRN--YAVTEGAYDCAVPRFQVERNVQLVQNIPLWGLDNKTPV-HglfhnllqsevdQRARVTSSRNIKEIFIP 2578
                  99*******************99975..677777778889******************99443332.235666666555433333333333333333 PP

     DUF3492   94 alkepeae.........seellkelleelaekekklsledflkskeawdlileayeell..............edesfvdyfwtvrlllspllkl.. 165 
                  +lk+ +++         + + l+ ++ +l+e  +  ++++  +s+++  +  e++ +++              e+++ +d+  +++l +  ++    
  KKY22650.1 2579 ILKRIIRAartryntnqDLRELTLCFLRLNEYFETNDYTTTWRSNAVKRVWRETWLQEYndpniqsfstlfpmEQPTRHDFEEALELYIGYFFIFsi 2675
                  3333333355556655566666777888888889999999999999955555555444445556777777777788888888887777666555431 PP

     DUF3492  166 .laeelpkadvyHavstGyAgllgallkerkgtpllltEHGiYtrErkiellqaewisevkalrelwirffeslgrlvYeaadkiitlye.knrerq 260 
                   + e++p  +vy ++  G+ +l g+ lk r+gt   +  H i+ rE  +++++a+       ++++  +  ++  +l+Y +ad i+  ++  n +++
  KKY22650.1 2676 rIPEKVP--RVYQSTHHGISSLWGMCLKLRRGTVWGIWDHAILWRESCLNISTAQCF-LPIPVQNMLLAGMKVAAHLAYMHADVILPCTDtFNPSWE 2769
                  4444554..6999******************************************99.6778999**********************9863699*** PP

     DUF3492  261 iedGAd 266 
                  ie G+d
  KKY22650.1 2770 IEVGTD 2775
                  **9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.29u 0.33s 00:00:01.62 Elapsed: 00:00:00.54
# Mc/sec: 17432.52
//
Query:       KKY22651.1  [L=328]
Description: putative cell surface spherulin 4-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-55  188.6   0.0    1.7e-55  188.3   0.0    1.1  1  Spherulin4       Spherulation-specific family 4
  ------ inclusion threshold ------
       0.19   11.9   0.0       0.89    9.7   0.0    2.0  3  Helitron_like_N  Helitron helicase-like domain at N-terminus


Domain annotation for each model (and alignments):
>> Spherulin4  Spherulation-specific family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.3   0.0   1.9e-59   1.7e-55       2     238 ..      65     300 ..      64     302 .. 0.93

  Alignments for each domain:
  == domain 1  score: 188.3 bits;  conditional E-value: 1.9e-59
                 EEEE--S---TTTTHHHHHHHHH-TTS-EEEEE-SSSSS-SS..SS--HHHHHHHHHHHTSTTEEEEEEEE-TTTTS-HHHHHHHHHHHHHHHH....T CS
  Spherulin4   2 ilvPlYiyplksaWdplfsaikanpslefvvivNPgsGPgsa..plpdadYsaalkklsaytnvevlGYvatgygkrelsevkkdidtYaawls....a 94 
                 +lvPlYiyp++++Wdpl++ai+++p+l f +++NP++GPg +  + pda+Y + +++l++y+nv++lGYv+t+ ++r++ ++++d  tYa+w+s    +
  KKY22651.1  65 VLVPLYIYPEAGKWDPLYTAISEYPTLLFSIVINPQNGPGGSpgSFPDANYMNGISTLRSYPNVQLLGYVHTSGTARPMRQIESDLLTYATWSShprvR 163
                 89**************************************764356**************************************************999 PP

                 S--SEEEEES--S..-HHHHHHHHHHHHHHHHSTTSTTT-EEEEE-SS---GGGG.GGSSEEEEEEEEHHHHHHT...TGGGGG..--GGGEEEEEE-- CS
  Spherulin4  95 irldGIFvDEvpt..dakyldylqritdlvkssaattkeaivihNPGtvsedaffsrlaDyvvvfEnslaayedsgdkvsanlatpekrakaaavvhtv 191
                 ++ldG+F+DE+p+   +++ +y++ + ++++++ a    a++++NPG+ + + ++ +laD++v+fE+ +++++++ +k   +  +++ r ++a+++h+ 
  KKY22651.1 164 LALDGVFIDECPSddLSSTIEYMRAVCTFARHTIA---GAHLTFNPGVPVPEVYY-SLADTIVTFEDHHNKLSTDVAKFPFDHIPDSVRCRCAFLIHDY 258
                 *************7668999************988...999**************.*******************9999999999************** PP

                 -TTS-T..HHHHHHHHHHHH..H-SEEEE---SSSTSS--TTHHHHHH CS
  Spherulin4 192 ektensekeaikklveavtq.hklggvflTdatddYatfssgweefve 238
                 + +  ++ +    lv +++   ++ g+f+T+ +  Y+++s+ we+fv+
  KKY22651.1 259 KGDDRKQAD----LVTTIVGrMGIPGLFITTHS--YERWSELWEDFVD 300
                 998777665....66666665999******998..8**********97 PP

>> Helitron_like_N  Helitron helicase-like domain at N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.53   4.7e+03      86     110 ..     136     160 ..     131     162 .. 0.84
   2 ?   -2.5   0.0      0.55   4.9e+03      97     129 ..     185     217 ..     181     238 .. 0.74
   3 ?    9.7   0.0    0.0001      0.89      99     129 ..     268     298 ..     257     319 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.53
  Helitron_like_N  86 vpgsprymqekrqdlmaivrelgkP 110
                       +g+ r m++  +dl+++++    P
       KKY22651.1 136 TSGTARPMRQIESDLLTYATWSSHP 160
                      5799999********9999887777 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.55
  Helitron_like_N  97 rqdlmaivrelgkPdlFiTltcndkwpeikeel 129
                      ++ ++ +  ++ +    +T+++    pe+   l
       KKY22651.1 185 YMRAVCTFARHTIAGAHLTFNPGVPVPEVYYSL 217
                      667777788888888999999988888887777 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.0001
  Helitron_like_N  99 dlmaivrelgkPdlFiTltcndkwpeikeel 129
                       + +iv ++g+P lFiT    + w e+ e +
       KKY22651.1 268 LVTTIVGRMGIPGLFITTHSYERWSELWEDF 298
                      45689*********************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.50
# Mc/sec: 1978.55
//
Query:       KKY22652.1  [L=1104]
Description: putative atp dependent dna ligase domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-26   91.3   0.2    1.8e-25   89.8   0.0    1.8  2  DNA_ligase_A_M  ATP dependent DNA ligase domain
    2.1e-22   80.3   0.0    4.8e-22   79.1   0.0    1.6  1  DNA_ligase_A_N  DNA ligase N terminus


Domain annotation for each model (and alignments):
>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       0.2   1.8e+03     106     135 ..     193     222 ..     169     246 .. 0.66
   2 !   89.8   0.0     2e-29   1.8e-25       5     204 .]     265     484 ..     261     484 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.2
                     THHHHHHSEEEEEEEEEEEETTEEHTTSCH CS
  DNA_ligase_A_M 106 veeklkeaelclfvFDiLyldgesltdepl 135
                     v e++   + +++++D+L++ +  +   ++
      KKY22652.1 193 VPEAVVMGQYHFLLYDLLAFQDSFIGAVEI 222
                     66666778999*******998755555554 PP

  == domain 2  score: 89.8 bits;  conditional E-value: 2e-29
                     EEESCHHHHHHHTTTSEEEEEEEESSEEEEEEE...ETTEEEEEETTS-B-GGGCHHHHHHHHHHBSTTE......SEEEEEEEEEEEETTTTCB CS
  DNA_ligase_A_M   5 eslksiekalkkleekafivEiKyDGeRaqvhk...egdkvklfSRrlkditaakpelvkalkeafkkde......ksvilDGElvavdketgei 90 
                      +++si++ ++  +++++ vE KyDGe  q+h    ++  +++fS ++k+ t ++  +   lk+a+k  +      +++il+GEl++++   +++
      KKY22652.1 265 DKARSIKHCCTLANRRQMSVERKYDGEYCQIHIdvsKNCPIRIFSKSGKESTMDRVGVHDSLKKALKIGQydclvaSQCILEGELLVWNDFYKSV 359
                     567788999988899*****************732244459************6666666666666554311111157***************** PP

                     EHHHHHCHHHHCHC......CTHHHHHHSEEEEEEEEEEEETTEEHTTSCHHHHHHHHHHHB--BTTTEEE--EEEE.....SSHHHHHHHHHHH CS
  DNA_ligase_A_M  91 lpfqklasrkkkkk......kveeklkeaelclfvFDiLyldgesltdeplkeRrklLeeilkesedrvelaeslev.....kdveeleelleea 174
                     +pf  ++++++++       + + +    +l ++++D++  d++  +++pl++Rr++Le +++ +++rv++a+++++     +  ee++ +++++
      KKY22652.1 360 QPFRMIRKHVSRSGrfigveQDSPVHADDHLMIMLYDVMLWDDVICIKQPLRQRRRILEGLVTIIPGRVDIAKHRVIdfrrsRAPEEFRVAFAQS 454
                     *********97776578777444555778********************************************999855554689********** PP

                     HHTTECEEEEEETT-CC-TTCEEEEEEEEE CS
  DNA_ligase_A_M 175 iseglEGlvvKnpdskYepgkrsknwlKvK 204
                     i ++ EGlv+K +d +Y   + s++ +K+K
      KKY22652.1 455 ITQRWEGLVLKGMDDPYSVLSTSSHGIKLK 484
                     ******************999999999988 PP

>> DNA_ligase_A_N  DNA ligase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.0   5.3e-26   4.8e-22       1     161 [.       4     190 ..       4     202 .. 0.81

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 5.3e-26
                     BCHHHHHHHHHHCC.-.--HH.......HHHHHHHHHHHTS-..SHHHHHHHHHH...SS-CCC.S------HHHHHHHHHHHHT--..HH.HHH CS
  DNA_ligase_A_N   1 pFaelaelfekieest.kkrl.......ekrailanffrkvesagpedlypalrL...llPdyd.greygigesllakalaealgls..kk.kik 80 
                     pF++l+el+e +++++ +k l          + ++++f++ ++a p    +a+ +   l+P+++ +r+yg++e++l++al+++l+l   ++ + +
      KKY22652.1   4 PFKTLCELLEDLDANRvQKALprsagadPDLRTITTWFNAHHNAIPRKGSSAVAFlscLFPERRvDRVYGLKEKRLSRALGRCLCLGdsRRrNFE 98 
                     7*************77676668777776558899999988888788888888888888************************9997721223455 PP

                     HHHHHHS-HHHHHHHHHCCHHHH..------BHHHHHHHHHHHHH-...STTHH.........HHHHHHHHHHHHHS-HHHHHHHHHHHCT---S CS
  DNA_ligase_A_N  81 dalakvgDlgevaeevlskrstl..akkspltieevnelLdklaaa...gkgse.........dekkkilkkllkraspeEakyliriilkdlri 161
                     ++ ++  D+ge++++vl++       ++ ++t+ee++  Ld++aa    +              +  ++l+ +++r++++Eak+l+r+ilkd+  
      KKY22652.1  99 HDIERGKDIGECVFRVLREAELPrvCEERQVTLEEIDVALDQVAAGcqfS---SpdlrrhvlpRRPDEVLEPIFQRLQSREAKWLTRMILKDFAP 190
                     557779***********77766689******************9444331...13444455547779*************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 7088.65
//
Query:       KKY22653.1  [L=722]
Description: putative mitochondrial chaperone bcs1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-37  129.3   0.2    3.9e-37  128.1   0.2    1.7  1  BCS1_N      BCS1 N terminal
      5e-17   62.6   0.0    7.6e-08   32.9   0.0    2.6  2  AAA         ATPase family associated with various cellular ac
     0.0024   17.7   0.0     0.0044   16.8   0.0    1.3  1  RuvB_N      Holliday junction DNA helicase RuvB P-loop domain
  ------ inclusion threshold ------
      0.033   13.5   0.0      0.083   12.2   0.0    1.7  1  ATPase      KaiC
      0.073   13.4   0.1       0.28   11.5   0.1    2.1  1  AAA_16      AAA ATPase domain
      0.078   13.0   0.0       0.24   11.4   0.0    1.9  1  AAA_5       AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> BCS1_N  BCS1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.1   0.2   1.3e-40   3.9e-37      23     187 .]       1     178 [.       1     178 [. 0.88

  Alignments for each domain:
  == domain 1  score: 128.1 bits;  conditional E-value: 1.3e-40
      BCS1_N  23 flvsveissdDeaydwvlaWlsaqpasrrsrelsvetrtksrssdssaeedededeeedg.......kkkkplrylPavgtthlfrykgrllavtRere 114
                 ++++++i s+De+y ++ +W+ +  + +r r+l++ +++++ +s  ++++  + dee  +       +++ p++y+Pa+g  h+f+ykg+++ ++R+re
  KKY22653.1   1 MTSTISIASEDEIYYYISSWIREVDILQRVRNLQAISDSSDVDSLLNDDNAPSADEE--ElfnfsnwESRIPPKYMPAIG-AHWFWYKGNFFKFERKRE 96 
                 79************************************9998743333332222222..134456678899*********.7****************9 PP

      BCS1_N 115 ekssdsetga....peetltltclgrsreilkeLleearelalkkqegktviyraa.....agsggeWrrvasRpkRplstV 187
                    +d   g+    +e+++ lt+lgrs+++ k+Ll ear+++l+++  kt+++r++      +++++W rva Rp+Rp++tV
  KKY22653.1  97 AAFKDGFFGGevlgQEKSINLTVLGRSTKPAKKLLLEARDRSLAQESTKTIVRRPSpkehrGRGRQAWMRVAMRPSRPMETV 178
                 999998888888888999*************************************9***98788*****************9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   2.5e-11   7.6e-08       2      80 ..     216     286 ..     215     295 .. 0.80
   2 !   26.9   0.0   1.7e-09   5.1e-06      74     131 ..     325     384 ..     296     385 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2.5e-11
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCH CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgsese 80 
                 l++GppGtGKT+l  a+a  +g++++ is+ e        +e++++ lf+++ +    +++++++ida + +r++ e++
  KKY22653.1 216 LFHGPPGTGKTSLSFAIAGVFGFDVYCISLLEPS-----LTEEDLSILFTNLPS---RCVVLLEDIDAAGLHRKTPEDD 286
                 9********************9777777766655.....56********99754...4***********9999333333 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 1.7e-09
                 H..TTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  74 r..sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 r  +g++++++   ++ Ll+++dgv + e+  i++++tn p+kld+al+r gR+d ki ++
  KKY22653.1 325 RtgRGANNDQQGISLSGLLNAIDGVASPEG-RILVMTTNFPEKLDEALVRpGRIDLKIGFT 384
                 255677888888999************877.9999**********************9886 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.5e-06    0.0044      37      94 ..     216     274 ..     204     284 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.5e-06
      RuvB_N  37 llyGpPGlGkttlakiiakelgvklkits..gPvlekagdlaalltnleekdvlfideih 94 
                 l++GpPG Gkt+l+  ia  +g ++   s   P l  + dl+ l+tnl ++ v+++++i 
  KKY22653.1 216 LFHGPPGTGKTSLSFAIAGVFGFDVYCISllEPSLT-EEDLSILFTNLPSRCVVLLEDID 274
                 89******************9999988874468886.579**********9999998885 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.8e-05     0.083      13      56 ..     206     245 ..     180     276 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.8e-05
      ATPase  13 kgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtv 56 
                 ++Gip +r +l  G pGtGKt +   F+i g+  +g  +  +++
  KKY22653.1 206 NRGIPYRRGYLFHGPPGTGKTSL--SFAIAGV--FGFDVYCISL 245
                 58*******************55..6899884..3555555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   9.4e-05      0.28      22      40 ..     208     228 ..     199     313 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.4e-05
      AAA_16  22 grp..elvllsGesGvGKssl 40 
                 g p  +  l++G++G+GK+sl
  KKY22653.1 208 GIPyrRGYLFHGPPGTGKTSL 228
                 45566889************9 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.1e-05      0.24       3      41 ..     216     255 ..     214     261 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.1e-05
                 EEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHH CS
       AAA_5   3 lLvGppGtgKselaerlaaal.nreveyvqltrdtteedl 41 
                 l  GppGtgK++l+  +a ++  + + + +l  ++teedl
  KKY22653.1 216 LFHGPPGTGKTSLSFAIAGVFgFDVYCISLLEPSLTEEDL 255
                 678******************5566667788999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1422  (0.0793128); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.53
# Mc/sec: 4083.89
//
Query:       KKY22654.1  [L=887]
Description: putative potassium ion transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.7e-154  514.4  10.2   1.1e-153  512.4   3.9    2.1  2  TrkH      Cation transport protein
  ------ inclusion threshold ------
        7.9    6.1   6.0        2.5    7.7   0.0    2.7  3  SLC3A2_N  Solute carrier family 3 member 2 N-terminus


Domain annotation for each model (and alignments):
>> TrkH  Cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.4   0.00044         4     303     354 ..      43      94 ..      24     140 .. 0.66
   2 !  512.4   3.9  1.2e-157  1.1e-153     110     499 ..     364     752 ..     334     755 .. 0.97

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.00044
        TrkH 303 gslvvksipkgsrvlkalFqsvstrta.GFsvvdlsnlhpaikvllvlmmyig 354
                 gs ++     g +++++lF ++ + t  G+++vd+ ++ +  +++l l ++i 
  KKY22654.1  43 GSIIIVAT-GGIKYIDSLFFASGSATQsGLNTVDMNKINTCQQLILYLLAMIC 94 
                 44444444.4889999999998888888************9987655544443 PP

  == domain 2  score: 512.4 bits;  conditional E-value: 1.2e-157
        TrkH 110 laylsl.ptlgrgsaflylseaqkeelggkelrslselikilvvyyvgleilafvllvvliytakaysevvdstgvsplwwaffhsmSafnnlGfsltp 207
                 ++yls+ pt+gr+s+f+ l+e+q+eelgg+e+r+l+ l++il+ y++ ++i ++++l+++i  ++ y++vv++ g  ++ww++f+s+Safn+lGf+ltp
  KKY22654.1 364 MPYLSWePTIGRNSMFVNLTEEQREELGGIEYRALKTLAVILITYFFAFHIFGAICLIPWILNTH-YGKVVTDIGQGRVWWGIFTSASAFNDLGFTLTP 461
                 69***********************************************************9998.********************************* PP

        TrkH 208 nSlasfnknivillvaiifiilGnigFpillrviiaikkkilrdlkqikeslsflldlprrcftLllasgfvwllllelavlnvtdnilfilldegslv 306
                 +S+ sf+ +i++ll+++++i++Gn+gFp++lr+ i++  k ++  + i e l flld+prrcftLl++ g++w+l+  l+vln +d i+fi+ld++++ 
  KKY22654.1 462 DSMYSFEDAIFPLLLMTFLIVIGNTGFPCMLRFVIWLATKFVPRGSSIWEELHFLLDHPRRCFTLLFPRGATWWLFAILVVLNGLDLIFFIILDLNDST 560
                 *************************************************************************************************** PP

        TrkH 307 vksipkgsrvlkalFqsvstrtaGFsvvdlsnlhpaikvllvlmmyigglpgStaggIrrtnvyeefslgky.eieqekepkavskksidgkhlerqll 404
                 v sip g r++++lFq++strtaGF+vv ls lhpai+v++++mmyi++ p  +a+++rrtnvyee slg+y  +++e+e++  ++ s +g+hl+rql+
  KKY22654.1 561 VTSIPPGLRFVAGLFQASSTRTAGFAVVNLSDLHPAIQVSYLIMMYISVFP--IAISMRRTNVYEEKSLGIYaPVDEEEEDS--KEPSYVGAHLRRQLS 655
                 ***************************************************..*******************5556666655..999************ PP

        TrkH 405 vdlwslflvlliilileglklsdvqepdfsffdiLfevvSaygtvGLSlG.a.knaslsaqlttisklvlialmirGrlrglpvlldraillpsdkl 499
                 +dlw++fl++++i i+eg++l++ ++p+f++f +Lfe+vSaygtvGLSlG +  n+sls +++tisklv+ia++irGr+rglp+ ldraillps++l
  KKY22654.1 656 FDLWYIFLGMFVIAIAEGDRLENTNQPSFTLFSVLFEIVSAYGTVGLSLGyPtVNTSLSGEFNTISKLVIIAMQIRGRHRGLPYELDRAILLPSESL 752
                 ***************************************************99*****************************************987 PP

>> SLC3A2_N  Solute carrier family 3 member 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.05   4.5e+02      29      56 ..      19      48 ..      16      52 .. 0.71
   2 ?   -5.4   1.4         2   1.8e+04      37      56 ..     402     421 ..     398     421 .. 0.69
   3 ?    7.7   0.0   0.00027       2.5      32      53 ..     649     670 ..     638     671 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.05
    SLC3A2_N 29 fWvrvRwlllilfwlvwlgmLv..gaivii 56
                + +r R l +i    v+l++++  g+i+i+
  KKY22654.1 19 YSIRKRKLNFISIHYVYLITMAmlGSIIIV 48
                557889999999999998775421666666 PP

  == domain 2  score: -5.4 bits;  conditional E-value: 2
    SLC3A2_N  37 llilfwlvwlgmLvgaivii 56 
                  +il    +   ++gai +i
  KKY22654.1 402 AVILITYFFAFHIFGAICLI 421
                 45666667777888998876 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.00027
    SLC3A2_N  32 rvRwlllilfwlvwlgmLvgai 53 
                 ++R+ l + +w ++lgm+v ai
  KKY22654.1 649 HLRRQLSFDLWYIFLGMFVIAI 670
                 69*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.36s 00:00:01.16 Elapsed: 00:00:00.57
# Mc/sec: 4693.04
//
Query:       KKY22655.1  [L=829]
Description: putative ibr finger domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-07   30.9  22.2      3e-07   30.5  10.3    4.7  4  IBR             IBR domain, a half RING-finger domain
    3.3e-06   27.1   9.8    3.3e-06   27.1   9.8    3.3  3  Zn_clus         Fungal Zn(2)-Cys(6) binuclear cluster domain
      3e-05   23.0   0.9      5e-05   22.3   0.9    1.3  1  Fungal_trans_2  Fungal specific transcription factor domain
     0.0015   18.5   4.7     0.0015   18.5   4.7    4.6  4  zf-RING_5       zinc-RING finger domain
     0.0015   18.8   4.2     0.0015   18.8   4.2    4.7  4  zf-RING_2       Ring finger domain
     0.0027   17.5   1.3     0.0027   17.5   1.3    4.8  4  zf-C3HC4        Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.014   15.2   0.7      0.014   15.2   0.7    5.1  5  zf-C3HC4_2      Zinc finger, C3HC4 type (RING finger)
        0.2   11.7   2.0         19    5.4   0.0    2.5  2  SUZ-C           SUZ-C motif


Domain annotation for each model (and alignments):
>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   4.8       0.4     9e+02      21      54 ..     183     210 ..     106     212 .. 0.71
   2 !   15.1   4.0     9e-06      0.02      13      62 .]     255     306 ..     245     306 .. 0.82
   3 !   30.5  10.3   1.4e-10     3e-07      14      62 .]     320     364 ..     310     364 .. 0.87
   4 ?   -2.8   2.6       3.4   7.6e+03      18      36 ..     420     440 ..     404     450 .. 0.63

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.4
         IBR  21 CprpdCeaiieksegcksvtCskCgfefCfnCkk 54 
                 C    C   + + eg    + s Cg+++C +C++
  KKY22655.1 183 CV--SCLDNVDEREG---FR-SACGHRYCRECLR 210
                 33..33333333333...22.3499*****9985 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 9e-06
         IBR  13 es.dpnlkwCprpdCeaii....eksegcksvtCskCgfefCfnCkkewHeglsC 62 
                 e  ++++++C    C++++     ++++   ++C++C++ + + C+   H++++C
  KKY22655.1 255 EFdTRDRIYCADHSCSTFVppwfIQNDD---AQCPTCQKTTHVPCRTLSHPNAQC 306
                 555789*************666433333...78********************99 PP

  == domain 3  score: 30.5 bits;  conditional E-value: 1.4e-10
         IBR  14 sdpnlkwCprpdCeaiieksegcksvtCskCgfefCfnCkkewHeglsC 62 
                 + + ++ C   +C++++e ++gc+++tC+ Cg efC+ C++ew + ++C
  KKY22655.1 320 EAEGWRRCF--NCGSLVELDQGCNHITCR-CGREFCYVCGREWKG-CEC 364
                 44669****..******************.*************85.555 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 3.4
         IBR  18 lkwCp..rpdCeaiieksegc 36 
                 +++C    p+C+a i+++  c
  KKY22655.1 420 RVKCDetHPQCGACIRHNVPC 440
                 344431145666666666554 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.7      0.59   1.3e+03      20      33 ..     285     299 ..     279     305 .. 0.77
   2 ?  -10.2   9.5         8   1.8e+04      10      31 ..     342     365 ..     340     371 .. 0.66
   3 !   27.1   9.8   1.5e-09   3.3e-06       5      35 ..     415     444 ..     410     449 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.59
                 -HHHHHCT.HHHCCC CS
     Zn_clus  20 CsnCkkln.leCtfy 33 
                 C  C+k   ++C+  
  KKY22655.1 285 CPTCQKTThVPCRTL 299
                 999999988999855 PP

  == domain 2  score: -10.2 bits;  conditional E-value: 8
                 T---STSSSS-HHHHHCT..HHHC CS
     Zn_clus  10 KvKCdakkPaCsnCkkln..leCt 31 
                 ++ C  +++ C  C +    +eC 
  KKY22655.1 342 HITCRCGREFCYVCGREWkgCECP 365
                 667888888899997654136665 PP

  == domain 3  score: 27.1 bits;  conditional E-value: 1.5e-09
                 HHHHCT---STSSSS-HHHHHCTHHHCCCCT CS
     Zn_clus   5 nCrkkKvKCdakkPaCsnCkklnleCtfyse 35 
                 +C+ ++vKCd+ +P+C+ C+++n++C+ ys+
  KKY22655.1 415 RCKARRVKCDETHPQCGACIRHNVPCE-YSK 444
                 7**************************.776 PP

>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.9   2.2e-08     5e-05       9     101 ..     506     603 ..     499     614 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.2e-08
  Fungal_trans_2   9 nvapllspvpes..snpfrkvllplalsnkallhallalsafhl........qskgpkds......lereakrykslalkelqealaelsstlsr 87 
                     ++ap l  ++++  ++  ++ + ++al+++ l++++l+l+a+++        +             + +  +ry++la+++ + a +elss+   
      KKY22655.1 506 QIAPDLPSSHDPdlRAINLNHVPQVALQHDYLMNTILSLAALNFlcqsppwvS------PvqpepdWATIHQRYLNLAIRQQRAAVTELSSHNA- 593
                     455544444444477778889999********************555555543......05555569*************************99. PP

  Fungal_trans_2  88 nekykdiLaaiLll 101
                         ++i  + +ll
      KKY22655.1 594 ----EAICFTAILL 603
                     ....5554443333 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   4.7   6.6e-07    0.0015       2      34 ..     183     223 ..     182     230 .. 0.82
   2 ?    3.7   1.4     0.027        60      23      44 .]     262     290 ..     261     290 .. 0.79
   3 ?  -11.4  13.5         8   1.8e+04      14      40 ..     339     365 ..     326     368 .. 0.51
   4 ?   -8.7   9.5         8   1.8e+04      20      42 ..     411     433 ..     409     441 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 6.6e-07
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll.........e 34 
                 C +C +++ +e++ +  +CgH +C +Cl++l+          
  KKY22655.1 183 CVSCLDNV-DEREGFRSACGHRYCRECLRRLFlgatkdenlF 223
                 ********.********************9987665554444 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.027
   zf-RING_5  23 ifCekClkkll.......ekeavCpiCrk 44 
                 i+C ++ +  +       + +a+Cp+C+k
  KKY22655.1 262 IYCADHSCSTFvppwfiqNDDAQCPTCQK 290
                 567777777777788888899******97 PP

  == domain 3  score: -11.4 bits;  conditional E-value: 8
   zf-RING_5  14 k..fyltsCgHifCekClkkllekeavCp 40 
                 +   ++ +Cg  fC  C ++ +    +Cp
  KKY22655.1 339 GcnHITCRCGREFCYVCGREWK--GCECP 365
                 3223334456666666666655..55555 PP

  == domain 4  score: -8.7 bits;  conditional E-value: 8
   zf-RING_5  20 CgHifCekClkkllekeavCpiC 42 
                 C H  C++   k+ e   +C +C
  KKY22655.1 411 CRHHRCKARRVKCDETHPQCGAC 433
                 66666666555555566666666 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   4.2   6.7e-07    0.0015       2      33 ..     182     212 ..     181     228 .. 0.85
   2 ?   -0.3   5.5      0.63   1.4e+03      36      44 .]     279     289 ..     255     308 .. 0.54
   3 ?    0.0  11.8       0.5   1.1e+03       3      42 ..     327     366 ..     325     366 .. 0.72
   4 ?   -8.1   8.4         8   1.8e+04      22      43 ..     412     433 ..     405     440 .. 0.48

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 6.7e-07
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerw 33 
                 +C+ Cl+++++++  +   CgH ++reCl+r+
  KKY22655.1 182 QCVSCLDNVDEREGFRSA-CGHRYCRECLRRL 212
                 8********999999987.**********996 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.63
   zf-RING_2  36 ssst..CPlCr 44 
                 ++    CP+C+
  KKY22655.1 279 QNDDaqCPTCQ 289
                 33334455552 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.5
   zf-RING_2   3 CpIC..leelssadsvlllpCgHvfhreClerwlrssstCPl 42 
                 C  C  l el+++ + +++ Cg  f++ C ++w    ++CP+
  KKY22655.1 327 CFNCgsLVELDQGCNHITCRCGREFCYVCGREWK--GCECPV 366
                 66664445666666666778************96..556885 PP

  == domain 4  score: -8.1 bits;  conditional E-value: 8
   zf-RING_2  22 gHvfhreClerwlrssst...CPlC 43 
                 +H+    C +r ++  +t   C +C
  KKY22655.1 412 RHH---RCKARRVKCDEThpqCGAC 433
                 443...3333322222222225444 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   1.3   1.2e-06    0.0027       1      31 [.     183     214 ..     183     227 .. 0.87
   2 ?   -2.0   2.1       1.5   3.5e+03      32      41 .]     279     288 ..     260     298 .. 0.74
   3 ?   -4.0  10.9       6.4   1.4e+04      13      39 ..     343     365 ..     327     366 .. 0.75
   4 ?   -7.2   9.4         8   1.8e+04      18      28 ..     426     436 ..     400     444 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.2e-06
                 -TTT-S--SS-E..E-TTS--B-CHHHHHHHH CS
    zf-C3HC4   1 CpiCleeakepn.elleCkHsfCskCirkilk 31 
                 C  Cl+++ e     + C+H++C++C+r++  
  KKY22655.1 183 CVSCLDNVDEREgFRSACGHRYCRECLRRLFL 214
                 899****999998999************9875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.5
                 CTSSB--TTT CS
    zf-C3HC4  32 srkkvkCPlC 41 
                 ++   +CP+C
  KKY22655.1 279 QNDDAQCPTC 288
                 4566779988 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 6.4
                 .E-TTS--B-CHHHHHHHHCTSSB--T CS
    zf-C3HC4  13 elleCkHsfCskCirkilksrkkvkCP 39 
                  +  C+ +fC+ C r++      ++CP
  KKY22655.1 343 ITCRCGREFCYVCGREWKG----CECP 365
                 5889**********99976....5566 PP

  == domain 4  score: -7.2 bits;  conditional E-value: 8
                 S--B-CHHHHH CS
    zf-C3HC4  18 kHsfCskCirk 28 
                 +H  C +Cir+
  KKY22655.1 426 THPQCGACIRH 436
                 36666677665 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.7   6.3e-06     0.014       1      30 [.     182     213 ..     182     220 .. 0.76
   2 ?    0.2   1.4      0.31     7e+02      33      40 .]     280     288 ..     261     288 .. 0.69
   3 ?   -2.9   4.9       2.8   6.4e+03      17      38 ..     287     307 ..     278     308 .. 0.54
   4 ?    2.7   8.0      0.05   1.1e+02      15      39 ..     344     366 ..     333     366 .. 0.86
   5 ?   -7.9   8.2         8   1.8e+04      18      40 .]     411     433 ..     405     438 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.3e-06
  zf-C3HC4_2   1 kCpiCldmlkdpsvvt.pCgHvfCqkCilr.s 30 
                 +C  Cld   +      +CgH++C++C++r  
  KKY22655.1 182 QCVSCLDNVDEREGFRsACGHRYCRECLRRlF 213
                 588899988876444469**********9944 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.31
  zf-C3HC4_2  33 ekn.eCPlC 40 
                 + + +CP+C
  KKY22655.1 280 NDDaQCPTC 288
                 33469**** PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.8
  zf-C3HC4_2  17 pCgHvfCqkCilrsLeekn.eCP 38 
                  C+ +++  C  r+L++ n +CP
  KKY22655.1 287 TCQKTTHVPC--RTLSHPNaQCP 307
                 4555555555..34445555666 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.05
  zf-C3HC4_2  15 vtpCgHvfCqkCilrsLeekneCPl 39 
                 +  Cg  fC+ C +++  ++ eCP+
  KKY22655.1 344 TCRCGREFCYVCGREW--KGCECPV 366
                 558************9..666***6 PP

  == domain 5  score: -7.9 bits;  conditional E-value: 8
  zf-C3HC4_2  18 CgHvfCqkCilrsLeekneCPlC 40 
                 C H  C+    +  e + +C  C
  KKY22655.1 411 CRHHRCKARRVKCDETHPQCGAC 433
                 66666654444433333344333 PP

>> SUZ-C  SUZ-C motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0085        19      11      22 ..     159     170 ..     155     171 .. 0.91
   2 ?    5.0   0.5     0.011        24       8      21 ..     570     583 ..     569     583 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0085
       SUZ-C  11 pnlnviRePqGP 22 
                 +++ +iR+++GP
  KKY22655.1 159 QRDRAIRTQAGP 170
                 8999*******9 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.011
       SUZ-C   8 anrpnlnviRePqG 21 
                 ++r+ + +iR++++
  KKY22655.1 570 HQRYLNLAIRQQRA 583
                 5889999******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (829 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.48
# Mc/sec: 5153.54
//
Query:       KKY22656.1  [L=2093]
Description: putative nacht domain containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-20   71.1  10.2    4.7e-05   23.6   0.2    9.7  9  TPR_12           Tetratricopeptide repeat
    3.9e-09   35.9   2.9      0.065   13.3   0.0    6.7  6  TPR_7            Tetratricopeptide repeat
    7.3e-07   29.5   0.0    3.4e-06   27.4   0.0    2.2  1  AAA_22           AAA domain
    3.2e-06   27.6   0.4      1e-05   26.0   0.1    2.0  1  AAA_16           AAA ATPase domain
    0.00025   21.5   0.2        5.4    7.6   0.0    4.2  4  TPR_19           Tetratricopeptide repeat
    0.00039   20.4   0.1     0.0028   17.6   0.1    2.6  1  NACHT            NACHT domain
    0.00075   20.1   0.0         12    7.1   0.1    6.0  5  TPR_14           Tetratricopeptide repeat
     0.0019   18.1   8.8       0.18   12.0   0.0    5.8  5  TPR_2            Tetratricopeptide repeat
      0.002   17.9   0.1         13    5.8   0.0    5.7  6  TPR_1            Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.012   15.6   2.6      0.077   13.0   0.1    3.1  3  DUF3907          Protein of unknown function (DUF3907)
      0.018   15.1   0.5        9.8    6.3   0.1    3.0  2  DUF3683          Protein of unknown function (DUF3683)
      0.034   14.6   1.9        4.7    7.6   0.1    2.9  2  AAA_23           AAA domain
      0.035   13.9   1.3      0.096   12.4   0.1    2.3  2  AAA_29           P-loop containing region of AAA domain
      0.076   13.3   0.2         30    5.2   0.0    4.8  5  PPR              PPR repeat
      0.087   13.1   0.5       0.99    9.6   0.0    3.1  3  AAA_28           AAA domain
       0.16   12.3   0.0       0.16   12.3   0.0    5.0  3  TPR_8            Tetratricopeptide repeat
       0.24   10.4   1.9       0.63    9.1   1.9    1.6  1  Glyco_hydro_67M  Glycosyl hydrolase family 67 middle domain


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.1e-07   0.00011      17      71 ..     755     809 ..     750     810 .. 0.93
   2 ?    1.3   0.0       0.4   4.2e+02      31      73 ..     859     901 ..     853     904 .. 0.82
   3 ?    0.3   0.0      0.85     9e+02      42      68 ..     956     982 ..     938     982 .. 0.86
   4 ?    2.0   0.0      0.24   2.5e+02      10      68 ..    1013    1070 ..    1005    1073 .. 0.74
   5 ?    0.4   0.0      0.79   8.4e+02      54      74 ..    1154    1174 ..    1147    1177 .. 0.75
   6 ?    2.0   0.1      0.25   2.6e+02       7      33 ..    1201    1227 ..    1195    1242 .. 0.77
   7 !   23.6   0.2   4.5e-08   4.7e-05      11      71 ..    1247    1307 ..    1238    1313 .. 0.90
   8 ?    5.4   0.0     0.022        23      31      72 ..    1400    1442 ..    1397    1444 .. 0.89
   9 !    6.8   0.0     0.008       8.4      45      73 ..    1920    1948 ..    1915    1951 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.1e-07
      TPR_12  17 grydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                   + eA+el+e al+++++ +G++h  ++++++ Lg+l+r l  + +A e++ +a
  KKY22656.1 755 CSLGEAIELHELALRVRSACFGEKHNSVLQAMIILGILHRSLSSPVKAAEFFYRA 809
                 55679**********************************************9887 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.4
      TPR_12  31 eiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 ei++  +G+++++ +  + +L+ ly   ++   A  +++e ++
  KKY22656.1 859 EICKTRHGKHSDAIIHWYEALAKLYISIKEEYRATLIYKELYE 901
                 8888889*****************9877776667666666666 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.85
      TPR_12  42 pltattlrnLgrlyralgryeeAlell 68 
                 +l +++ + L+r y+  g++  A++l+
  KKY22656.1 956 ELRISIIIRLARSYESHGKWWLAEKLY 982
                 577888999***************998 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.24
      TPR_12   10 aavlrrlgrydeAlellekaleia.rrllGpdhpltattlrnLgrlyralgryeeAlell 68  
                    +l+rl+r +eA  +l    + +   +++ +    +++l  Lg l+ra+g +  A++++
  KKY22656.1 1013 VRFLQRLKRIEEATNILVCLWAEYeHHSFESET--IIICLKELGVLFRAFGLLSVAISIF 1070
                  566777777777777777776666455566555..999*************999999987 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.79
      TPR_12   54 lyralgryeeAlelleealai 74  
                  ly ++++y eA+ + +++l+i
  KKY22656.1 1154 LYIQQEKYVEAEFIIRRSLEI 1174
                  566777777887777777776 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.25
      TPR_12    7 nnlaavlrrlgrydeAlellekaleia 33  
                  ++ a+++r+l  + +A+e + + ++ +
  KKY22656.1 1201 THFAHCHRHLHHFIQAEETYLRIYRSC 1227
                  468999999999999999999887765 PP

  == domain 7  score: 23.6 bits;  conditional E-value: 4.5e-08
      TPR_12   11 avlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71  
                  +++ +  r+d+ +e++ + l+ +r++lG +h lt+ tl++Lg ++ +lgr +eA e++ e 
  KKY22656.1 1247 TFYEEFHRHDKVIEIHIELLQEYRKALGATHKLTIKTLYALGSICMLLGRRKEACEYYVEI 1307
                  56777889**********************************************9999765 PP

  == domain 8  score: 5.4 bits;  conditional E-value: 0.022
      TPR_12   31 eiarrllGpdhpltattlrnLgrlyral.gryeeAlelleeal 72  
                  e +++l+G   + ++t++++L++++++  ++y e +  +ee++
  KKY22656.1 1400 ETVTKLFGISAAIVITAMIALAEICEMHeEHYHESVTVYEEVI 1442
                  5568899999999*************777**********9986 PP

  == domain 9  score: 6.8 bits;  conditional E-value: 0.008
      TPR_12   45 attlrnLgrlyralgryeeAlelleeala 73  
                  ++    L++ly  +gr+ eA + +ee+l+
  KKY22656.1 1920 LELSERLADLYKHAGRWSEAMRVHEEVLR 1948
                  55666788888888888888888888875 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.38     4e+02      16      31 ..     758     773 ..     749     778 .. 0.73
   2 ?   -2.5   0.0         7   7.4e+03       1      23 [.    1049    1071 ..    1049    1072 .. 0.85
   3 ?   -1.1   0.1       2.5   2.7e+03       2      29 ..    1148    1175 ..    1147    1178 .. 0.85
   4 !   13.3   0.0   6.1e-05     0.065       1      23 [.    1283    1305 ..    1283    1314 .. 0.92
   5 ?    0.8   0.0       0.6   6.3e+02       4      26 ..    1419    1442 ..    1416    1449 .. 0.77
   6 !   12.4   0.1   0.00012      0.12       4      29 ..    1925    1951 ..    1923    1961 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.38
       TPR_7  16 eeAielyeqsLaltkd 31 
                  eAiel+e +L+++++
  KKY22656.1 758 GEAIELHELALRVRSA 773
                 59*******8877765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 7
       TPR_7    1 aLlnLarlysrlGdyeeAielye 23  
                  +L  L++l+++ G  + Ai+++ 
  KKY22656.1 1049 CLKELGVLFRAFGLLSVAISIFG 1071
                  6889*******999999998875 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.5
       TPR_7    2 LlnLarlysrlGdyeeAielyeqsLalt 29  
                  + +L +ly ++ +y eA+ + ++sL++t
  KKY22656.1 1148 CMALMNLYIQQEKYVEAEFIIRRSLEIT 1175
                  6677799**********99999988876 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 6.1e-05
       TPR_7    1 aLlnLarlysrlGdyeeAielye 23  
                  +L++L++++  lG+++eA e+y 
  KKY22656.1 1283 TLYALGSICMLLGRRKEACEYYV 1305
                  79********************6 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.6
       TPR_7    4 nLarlysr.lGdyeeAielyeqsL 26  
                  +La++++  + +y e +++ye+++
  KKY22656.1 1419 ALAEICEMhEEHYHESVTVYEEVI 1442
                  677777667899*********943 PP

  == domain 6  score: 12.4 bits;  conditional E-value: 0.00012
       TPR_7    4 nLarlysrlGdyeeAielyeqsL.alt 29  
                  +La+ly   G+++eA +++e++L +++
  KKY22656.1 1925 RLADLYKHAGRWSEAMRVHEEVLrEID 1951
                  69*******************776666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   3.3e-09   3.4e-06       3     116 ..     317     455 ..     315     470 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 3.3e-09
      AAA_22   3 ktagilvvtGesGtGKTtllrrlleqldeeakaee...erpevvfvtlpsst....sskdllrellralglelka....................erls 74 
                 ++++il++tG  G+GK+tl  +++++l   a       ++ +++++t +s+     +s  +l+++l++l +++ +                    + + 
  KKY22656.1 317 SNDKILTITGAEGSGKSTLSGWMQDRLR--A---PlgrQSYGTISYTFASDApseaTSLAFLKNMLSQLLERNVGdtylyerlvksfeyysedrdSKKL 410
                 5789**********************93..3...2345788888666555555555**************99999****************99987777 PP

      AAA_22  75 seellealeqalrarav..ielliiDEaqhlr.seealeeLrsll 116
                 +e+l+eale  l++ ++    ++ +D  + l   +ea ++L+++l
  KKY22656.1 411 EEALWEALEAGLNTIKKksNLVIFVDALDELKdGQEAARKLHQRL 455
                 88888999999999999999***********65477777775444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.1   9.6e-09     1e-05      15     154 ..     311     451 ..     307     464 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 9.6e-09
      AAA_16  15 alervrsgrpelvllsGesGvGKsslv....rellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala..a 107
                 +l+ +rs++  ++ ++G+ G+GKs+l     ++l+ +l ++   +++ ++ +    +p  a   a+ +   l qll++  +    +  e+l ++++  +
  KKY22656.1 311 LLDFLRSND-KILTITGAEGSGKSTLSgwmqDRLRAPLGRQSYGTISYTFASD---APSEATSLAFLK-NMLSQLLER--NVGDTYLYERLVKSFEyyS 402
                 566667777.89***************55555555566666444444444444...676667777756.888888877..5568899999999999555 PP

      AAA_16 108 vpelagaeasrllellkrllallsrderplvlvlDdlqwade...aslql 154
                  + ++ +++++l+e+l + l+ +++++  lv+++D l+ +++   a ++l
  KKY22656.1 403 EDRDSKKLEEALWEALEAGLNTIKKKSN-LVIFVDALDELKDgqeAARKL 451
                 555555555***************9666.*********888833344444 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       4.2   4.4e+03      27      48 ..    1008    1029 ..    1005    1035 .. 0.88
   2 !    7.6   0.0    0.0051       5.4      19      53 ..    1139    1173 ..    1126    1177 .. 0.87
   3 ?   -0.4   0.0       1.6   1.7e+03       1      14 [.    1747    1760 ..    1747    1764 .. 0.88
   4 !    7.6   0.0    0.0053       5.5      21      52 ..    1916    1947 ..    1912    1955 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 4.2
      TPR_19   27 arllLAeallalgqldeAealL 48  
                  +++ +++ l  l++++eA ++L
  KKY22656.1 1008 IAIEYVRFLQRLKRIEEATNIL 1029
                  67789999**********9988 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0051
      TPR_19   19 qedpknaearllLAeallalgqldeAealLdalpe 53  
                  q d++   a ++L+++++++  + eAe ++ + +e
  KKY22656.1 1139 QVDAQFFKACMALMNLYIQQEKYVEAEFIIRRSLE 1173
                  668899999*******************9988765 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.6
      TPR_19    1 llaegdyaeAlall 14  
                  ll++gd+a+A++l 
  KKY22656.1 1747 LLEAGDLANAHNLA 1760
                  79********9986 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0053
      TPR_19   21 dpknaearllLAeallalgqldeAealLdalp 52  
                  dp+ +e+  +LA+++  +g++ eA+++ ++++
  KKY22656.1 1916 DPEALELSERLADLYKHAGRWSEAMRVHEEVL 1947
                  789999999***************98866665 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   2.7e-06    0.0028       3     161 ..     322     502 ..     320     507 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.7e-06
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-C.............................. CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlpepaapvse.............................. 71 
                 + ++G+ GsGK+tL  ++ + ++++   q +   ++ + + + s+ +    + + + sql+e +   +                               
  KKY22656.1 322 LTITGAEGSGKSTLSGWMQDRLRAPLGRQSYGTISYTFASDAPSEATSL-AFLKNMLSQLLERNVGDTYlyerlvksfeyysedrdskkleealweale 419
                 6799*********************999987666666666555555555.3334444555555555545466667777887778888885555444444 PP

                 CHHHHCCSCCCEE..........EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSCE..EEEE--TCCHHHHHHH CS
       NACHT  72 vwavllelperlL..........lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdleeqleeaivlevegfsesrrkqlvr 160
                             L          + +D+lDel++  gq+ ++++++ L++ i+k  +++ + +  ++p +   l+ + ++   +   + + +++++++r
  KKY22656.1 420 A----------GLntikkksnlvIFVDALDELKD--GQEAARKLHQRLHKCIEK--FSKIRAVTLSKPVSH--LGNTGCRH-LVITSEYNSNDIATYFR 501
                 3..........335555555554889*******8..55569*************..888887777777666..66666665.45555566666666666 PP

                 H CS
       NACHT 161 k 161
                 +
  KKY22656.1 502 H 502
                 5 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       1.1   1.1e+03       5      33 ..    1149    1177 ..    1145    1184 .. 0.87
   2 ?    2.7   0.0      0.28     3e+02       3      25 ..    1283    1305 ..    1281    1313 .. 0.89
   3 ?   -1.9   0.0       8.2   8.6e+03       6      29 ..    1419    1443 ..    1416    1449 .. 0.81
   4 ?   -1.3   0.0       5.5   5.8e+03       6      25 ..    1883    1902 ..    1882    1905 .. 0.88
   5 ?    7.1   0.1     0.011        12       6      29 ..    1925    1948 ..    1920    1965 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 1.1
      TPR_14    5 lalaeallalGdpdeAiallrralalaPd 33  
                  +al  ++ +++++ eA+ + rr l+  ++
  KKY22656.1 1149 MALMNLYIQQEKYVEAEFIIRRSLEITWN 1177
                  78999*******************99886 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.28
      TPR_14    3 allalaeallalGdpdeAiallr 25  
                   l+al+++++ lG+ +eA +++ 
  KKY22656.1 1283 TLYALGSICMLLGRRKEACEYYV 1305
                  689****************9985 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 8.2
      TPR_14    6 alaeal.lalGdpdeAiallrrala 29  
                  alae++ ++ + + e++++++++++
  KKY22656.1 1419 ALAEICeMHEEHYHESVTVYEEVIK 1443
                  78888635788899*******9997 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 5.5
      TPR_14    6 alaeallalGdpdeAiallr 25  
                  +l++a++ +G  + Ai+l++
  KKY22656.1 1883 LLVHAHACAGHIEPAIQLCD 1902
                  5899*************986 PP

  == domain 5  score: 7.1 bits;  conditional E-value: 0.011
      TPR_14    6 alaeallalGdpdeAiallrrala 29  
                  +la+++ ++G++ eA+++ +++l+
  KKY22656.1 1925 RLADLYKHAGRWSEAMRVHEEVLR 1948
                  79******************9997 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.19     2e+02       9      30 ..    1153    1174 ..    1146    1175 .. 0.91
   2 ?   -2.1   0.1       5.5   5.8e+03       8      26 ..    1204    1222 ..    1204    1225 .. 0.88
   3 !   12.0   0.0   0.00017      0.18       3      26 ..    1283    1306 ..    1281    1309 .. 0.91
   4 ?   -1.1   0.0       2.6   2.8e+03      12      29 ..    1426    1443 ..    1420    1444 .. 0.87
   5 ?    3.5   0.0     0.089        94       6      23 ..    1925    1942 ..    1921    1950 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.19
       TPR_2    9 layyklgdyeeAleafekAlel 30  
                  ++y+++ +y eA+   +++le+
  KKY22656.1 1153 NLYIQQEKYVEAEFIIRRSLEI 1174
                  68*************9999997 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.5
       TPR_2    8 GlayyklgdyeeAleafek 26  
                  + ++++l ++ +A+e + +
  KKY22656.1 1204 AHCHRHLHHFIQAEETYLR 1222
                  6799***********9987 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00017
       TPR_2    3 alynlGlayyklgdyeeAleafek 26  
                   ly+lG +++ lg+ +eA e++ +
  KKY22656.1 1283 TLYALGSICMLLGRRKEACEYYVE 1306
                  79********************76 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 2.6
       TPR_2   12 yklgdyeeAleafekAle 29  
                  ++  +y e +  +e++++
  KKY22656.1 1426 MHEEHYHESVTVYEEVIK 1443
                  77899**********997 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.089
       TPR_2    6 nlGlayyklgdyeeAlea 23  
                  +l+++y ++g++ eA + 
  KKY22656.1 1925 RLADLYKHAGRWSEAMRV 1942
                  89*************875 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.2   1.2e+03       7      27 ..     789     809 ..     784     809 .. 0.91
   2 ?   -2.9   0.0         7   7.4e+03      15      28 ..     866     879 ..     863     880 .. 0.89
   3 ?   -1.8   0.0         3   3.2e+03       6      24 ..     964     982 ..     963     983 .. 0.92
   4 ?    2.1   0.1      0.18   1.9e+02       9      30 ..    1153    1174 ..    1153    1174 .. 0.89
   5 ?    5.8   0.0     0.012        13       2      25 ..    1282    1305 ..    1281    1310 .. 0.90
   6 ?    0.4   0.0      0.61   6.4e+02       6      28 ..    1925    1947 ..    1925    1949 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.2
                 HHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekA 27 
                 lG ++++l  + +A e++ +A
  KKY22656.1 789 LGILHRSLSSPVKAAEFFYRA 809
                 89****************998 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7
                 T-HHHHHHHHHHHH CS
       TPR_1  15 gkydeAleyyekAL 28 
                 gk+ +A+ +  +AL
  KKY22656.1 866 GKHSDAIIHWYEAL 879
                 99*******99999 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 3
                 HHHHHHHHTT-HHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyy 24 
                 +l+  y + gk+  A++ y
  KKY22656.1 964 RLARSYESHGKWWLAEKLY 982
                 7999************988 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.18
                  HHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1    9 nayfklgkydeAleyyekALel 30  
                  n+y +++ky eA+   ++ Le+
  KKY22656.1 1153 NLYIQQEKYVEAEFIIRRSLEI 1174
                  79**********9988888886 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.012
                  HHHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_1    2 kalynlGnayfklgkydeAleyye 25  
                  k+ly lG +++ lg+ +eA eyy 
  KKY22656.1 1282 KTLYALGSICMLLGRRKEACEYYV 1305
                  789****************99996 PP

  == domain 6  score: 0.4 bits;  conditional E-value: 0.61
                  HHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1    6 nlGnayfklgkydeAleyyekAL 28  
                  +l+ +y + g++ eA    e++L
  KKY22656.1 1925 RLADLYKHAGRWSEAMRVHEEVL 1947
                  6999***********98777776 PP

>> DUF3907  Protein of unknown function (DUF3907)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.45   4.7e+02      71      88 ..     445     462 ..     432     470 .. 0.86
   2 ?   -3.0   0.2       6.2   6.6e+03      72      88 ..    1215    1231 ..    1206    1234 .. 0.86
   3 ?   13.0   0.1   7.3e-05     0.077       7      63 ..    1545    1600 ..    1541    1623 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.45
     DUF3907  71 eaAekaLykvyHqcveef 88 
                 + A + L++  H+c+e+f
  KKY22656.1 445 QEAARKLHQRLHKCIEKF 462
                 568899**********99 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.2
     DUF3907   72 aAekaLykvyHqcveef 88  
                   Ae++  ++y +c+ +f
  KKY22656.1 1215 QAEETYLRIYRSCLTSF 1231
                  6999*********9998 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 7.3e-05
     DUF3907    7 kLkkaveeleeflnettlesllkeeeeeeeyykgllsdlRrllvfseegleklrvll 63  
                   ++k+ ++++ +   ttl+s+    ++  +  ++ll++lR+llvf + g+e+  ++ 
  KKY22656.1 1545 IISKVTTSMTLYTAATTLASIYVT-AGLVHLGQDLLHQLRHLLVFHDLGIEEKITIK 1600
                  57889999999********99876.5778999*****************99765554 PP

>> DUF3683  Protein of unknown function (DUF3683)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0093       9.8      45     113 ..     379     463 ..     375     464 .. 0.81
   2 ?    5.6   0.0     0.016        16       3      34 ..    1824    1858 ..    1822    1879 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0093
     DUF3683  45 rllyevlGdiwvvrR....npylqddlldnkkrrkalvealehrleeiekrr.............ereekveelleaareaveafe 113
                 +ll + +Gd ++++R      y  +d  d+kk  +al+eale  l++i+k++             +++e +++l ++ ++ +e+f+
  KKY22656.1 379 QLLERNVGDTYLYERlvksFEYYSED-RDSKKLEEALWEALEAGLNTIKKKSnlvifvdaldelkDGQEAARKLHQRLHKCIEKFS 463
                 56777778877777733222455555.5889999*****************999*******9999999999999999999999996 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.016
     DUF3683    3 lReiPynytsfsDrei..virllgee.awelleeL 34  
                  +Re  + yts +Dr++  +++llg++ +++ le+L
  KKY22656.1 1824 FRESGFEYTSLQDRDLsgLVHLLGHQhNYTELETL 1858
                  79999*********975589999976146666666 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0045       4.7      15      35 ..     312     335 ..     306     336 .. 0.88
   2 ?    5.1   0.3     0.027        28     115     198 ..     375     461 ..     352     463 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0045
      AAA_23  15 idF...skgltlItGpNGaGKTTi 35 
                 +dF   ++++  ItG  G+GK+T+
  KKY22656.1 312 LDFlrsNDKILTITGAEGSGKSTL 335
                 788888899**************8 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.027
      AAA_23 115 deleqfisellgskki..il.nlilflgqerfeefelkdkkerleelekeleeledekkllekleqekekekeleeleeeleeilke 198
                 + l q++++++g ++   +l + + ++ ++r  ++++++  e+le+  + ++++++   ++++l ++k+ +++  +l ++l +++++
  KKY22656.1 375 NMLSQLLERNVGDTYLyeRLvKSFEYYSEDRDSKKLEEALWEALEAGLNTIKKKSNLVIFVDALDELKDGQEAARKLHQRLHKCIEK 461
                 5566667777776533445669999******9999999999999999999999999999***********************99987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   9.1e-05     0.096      14      38 ..     309     335 ..     305     337 .. 0.79
   2 ?   -1.7   0.1       2.5   2.6e+03       1      18 [.    1342    1359 ..    1342    1365 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.1e-05
      AAA_29  14 ghtieidlkg..atlltGpsGsGKSTl 38 
                 gh +++ +++  +  +tG+ GsGKSTl
  KKY22656.1 309 GHLLDFLRSNdkILTITGAEGSGKSTL 335
                 566666655557889***********8 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.5
      AAA_29    1 LkrlqlvNWgtfdghtie 18  
                  L+++ ++ W tf +h ++
  KKY22656.1 1342 LQKICVLLWETFVHHHHR 1359
                  7999********997655 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       1.3   1.3e+03       8      24 ..     967     983 ..     965     988 .. 0.85
   2 ?    0.2   0.1       1.1   1.1e+03       5      24 ..    1150    1169 ..    1147    1173 .. 0.86
   3 ?   -2.6   0.0       8.3   8.8e+03       4      26 ..    1560    1582 ..    1559    1584 .. 0.88
   4 ?   -2.4   0.0       7.1   7.5e+03       5      22 ..    1883    1900 ..    1882    1902 .. 0.86
   5 ?    5.2   0.0     0.028        30       8      28 ..    1928    1948 ..    1926    1949 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1.3
         PPR   8 sgycknGkleeAlelfk 24 
                 ++y ++Gk+  A++l+ 
  KKY22656.1 967 RSYESHGKWWLAEKLYI 983
                 7899***********96 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.1
         PPR    5 slIsgycknGkleeAlelfk 24  
                  +l++ y +  k+ eA+ +++
  KKY22656.1 1150 ALMNLYIQQEKYVEAEFIIR 1169
                  89*************98776 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 8.3
         PPR    4 nslIsgycknGkleeAlelfkeM 26  
                  ++l s y+ +G+++   +l++++
  KKY22656.1 1560 TTLASIYVTAGLVHLGQDLLHQL 1582
                  78999********9999999876 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 7.1
         PPR    5 slIsgycknGkleeAlel 22  
                   l+++++ +G +e A++l
  KKY22656.1 1883 LLVHAHACAGHIEPAIQL 1900
                  6899*********99987 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.028
         PPR    8 sgycknGkleeAlelfkeMke 28  
                  + y ++G+++eA+++++e ++
  KKY22656.1 1928 DLYKHAGRWSEAMRVHEEVLR 1948
                  67999************9876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00094      0.99       4     126 ..     324     445 ..     321     472 .. 0.60
   2 ?   -2.7   0.0       5.9   6.2e+03     104     128 ..    1754    1779 ..    1741    1785 .. 0.74
   3 ?   -2.1   0.1       3.9   4.1e+03      22      49 ..    1932    1965 ..    1921    1979 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00094
      AAA_28   4 itGgestGKTtlleaLaar.gypvvpEaareileeklakgedalpwvedllafaervleeqleeeaaaaankvlfcDrglldtlaYaraygge.aeae. 99 
                 itG+e++GK+tl+  +++r   p  + ++ +i    + +  d +p++++ laf + +l     ++ +++ +++++++r +     Y++ ++ +  e++ 
  KKY22656.1 324 ITGAEGSGKSTLSGWMQDRlRAPLGRQSYGTIS---YTFASD-APSEATSLAFLKNMLS----QLLERNVGDTYLYERLVKSFEYYSEDRDSKkLEEAl 414
                 9************99998866666555555555...223333.2333356666665554....455566778888888777777777777666444442 PP

      AAA_28 100 lea.aar.....ekrydlvfllppapeidddge 126
                 +ea + +     +k+ +lv++++   e+ +dg+
  KKY22656.1 415 WEAlE-AglntiKKKSNLVIFVDALDEL-KDGQ 445
                 44431.2344556666777777777777.5555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.9
      AAA_28  104 arekr.ydlvfllppapeidddgeRr 128 
                  a++++  ++vf+++ +  + +d+ R+
  KKY22656.1 1754 ANAHNlAKCVFHFAQTQRFFQDHLRC 1779
                  555552567*****988665999997 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.9
      AAA_28   22 r......gypvvpEaareileeklakgedalpwv 49  
                  +       ++v++E+ rei e++ + ++++ +++
  KKY22656.1 1932 HagrwseAMRVHEEVLREIDEHGRDLNTKDREAT 1965
                  2444444678999999999888888777777665 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.45   4.8e+02       6      30 ..    1150    1174 ..    1145    1175 .. 0.85
   2 ?   12.3   0.0   0.00015      0.16       2      26 ..    1282    1306 ..    1281    1310 .. 0.89
   3 ?    1.3   0.0      0.49   5.2e+02       3      29 ..    1416    1443 ..    1414    1443 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.45
                  HHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8    6 nlgsiylklgdyeeAkeyyekalel 30  
                   l ++y+++++y eA+  +++ le+
  KKY22656.1 1150 ALMNLYIQQEKYVEAEFIIRRSLEI 1174
                  55589*****************998 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00015
                  CHHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_8    2 eayynlgsiylklgdyeeAkeyyek 26  
                  + +y lgsi++ lg+ +eA eyy +
  KKY22656.1 1282 KTLYALGSICMLLGRRKEACEYYVE 1306
                  689********************76 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.49
                  HHHHHHHHH.HHTT-HHHHHHHHHHHHH CS
       TPR_8    3 ayynlgsiy.lklgdyeeAkeyyekale 29  
                  a+  l+ i+ +  + y+e++ +ye++++
  KKY22656.1 1416 AMIALAEICeMHEEHYHESVTVYEEVIK 1443
                  56678888888999***********997 PP

>> Glyco_hydro_67M  Glycosyl hydrolase family 67 middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.9    0.0006      0.63     188     322 ..    1347    1480 ..    1341    1482 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0006
                       EEEEE-----......TTSS-GGGHHHHHHGGGTT-S-TTEEEEEESSSSSS-SS----THHHH-SSSEEEEEEE-S-TTTTTTTS----HH CS
  Glyco_hydro_67M  188 iviwRaFvYna.qdwrdkkedRakaayeeFkpldgkfkdnvilqiknGpiDfqvrEpvsplfgalektnlalElqitqEylGqqthlvylap 278 
                       +++w +Fv+++ +++ + +ed ++  ye+++ +  +f+ +v   + +  +  q rE v+ lfg       +  + +++    +++h    ++
       KKY22656.1 1347 VLLWETFVHHHhRHEYKFTEDIIHVIYEKYRYV-LEFQAKVEFSVLY-KLTSQYRETVTKLFGISAAIVITAMIALAEICEMHEEHYHESVT 1436
                       789*******977888999**********9976.6899999999988.6899***********8888777777777777778899999999* PP

                       HHHHHHT-B--TTSTT-BHHHHHTTTTTT-S-EEEEEE----SS CS
  Glyco_hydro_67M  279 lwkevldfdtyakgegstvkkvvdgklfkkkltgiagvanvGed 322 
                       +++ev++  t+++ +++tv++  ++++++k ++ + ++   G++
       KKY22656.1 1437 VYEEVIKKITTTTTATNTVTETTTKTVKRKLSKVYMTIITNGKS 1480
                       **********************9999998888888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2093 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1342  (0.0748508); expected 358.6 (0.02)
Passed bias filter:                      637  (0.035529); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.50
# Mc/sec: 12638.34
//
Query:       KKY22657.1  [L=827]
Description: hypothetical protein UCRPC4_g03157 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-07   31.2   0.0      1e-06   29.0   0.0    2.1  1  Dynamin_N      Dynamin family
  ------ inclusion threshold ------
      0.016   15.3   0.0        1.7    8.8   0.0    2.5  2  MMR_HSR1       50S ribosome-binding GTPase
      0.018   15.3   0.1        2.6    8.3   0.0    3.2  2  DUF5071        Domain of unknown function (DUF5071)
       0.13   12.5   0.0       0.31   11.3   0.0    1.6  1  Orthopox_A49R  Orthopoxvirus A49R protein
       0.27   11.7   5.9        1.4    9.4   2.2    3.2  3  CelTOS         Cell-traversal protein for ookinetes and sporo
       0.44   11.2   4.2       0.28   11.8   1.3    2.1  2  DUF573         Protein of unknown function, DUF573
          5    6.9   7.6        4.6    7.0   1.8    2.9  3  Mer2           Mer2


Domain annotation for each model (and alignments):
>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   3.9e-10     1e-06      10     142 ..     197     426 ..     196     452 .. 0.76

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 3.9e-10
                 THHHHHHHHHTS--S---SSS---S-EEEEE.................................................................... CS
   Dynamin_N  10 GKSSvlnaLlgedilprgpnptTrrplelql.................................................................... 40 
                 GKSS++n+Ll  +   +   + T+++ +++                                                                     
  KKY22657.1 197 GKSSLINSLLNFPDIAKTGDIGTACTSVVTEyrqkpqdqvapvvieveylssteieemikellwnfrqiylpwvekgindgtvhdrdyirwqresevaw 295
                 9***********988888889999999999889999999999999999999999999999999999999999999988888888888888888888888 PP

                 ...........................CCT---CCS...SSEEEE..T-EB--CHHHHHHHHHHHHHHHT.SSSS--SS-EEEEEEETTS-SEEEEE-- CS
   Dynamin_N  41 ...........................geeeeaseravkeelkek..ekkledfsevreeieketekiag.ankgiskkvillkilsllvkgltlvDlP 109
                                            + +e+  +++ ++ + ++  +   ++  + ++e+ ++t++  + +   ++k++ ++ + + l+ gl l DlP
  KKY22657.1 296 salevafrnqrsfrkdsltdmsdgaleKATEQLISWTKDIAWPDGaeAGLWRSTANTADECCEKTSTFMQdRYWPFTKIIRVYLNAQVLKTGLILADLP 394
                 888888888777777777777777766555555567777777777765566667777777777777755524555555588888999************ PP

                 -B-SSSGTTSHHHHHHHSTTEEEEEEEETTS-C CS
   Dynamin_N 110 Gldsvnkrdqelvkeyikkadiilavtsanhdl 142
                 Gl+++n  + + +++y+ k+ i+l + + n+ +
  KKY22657.1 395 GLQDTNLARVKATQTYLMKREILL-INARNSHV 426
                 *****************8887655.44444444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00065       1.7      11      38 ..     197     227 ..     195     267 .. 0.80
   2 ?    3.8   0.0     0.023        60      42      86 ..     382     422 ..     301     459 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00065
                 SHHHHHHHHHTS..TEEESSST.TSSSSEEE CS
    MMR_HSR1  11 GKStLinaltge..kaivsdkp.gtTrdine 38 
                 GKS+Lin+l++    a+++d+   +T  ++e
  KKY22657.1 197 GKSSLINSLLNFpdIAKTGDIGtACTSVVTE 227
                 **********955488998886334444444 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.023
                 EETTEEEEEEECGGCSSHHHHHH.HHHHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1  42 klkgkeielvDtpGliegaseek.glgkaflaleeadlillvvdas 86 
                 ++ ++ ++l+D+pGl ++ +  + + ++++l ++e    +l+++a+
  KKY22657.1 382 QVLKTGLILADLPGL-QDTNLARvKATQTYLMKRE----ILLINAR 422
                 33346699******5.4222222345555554333....4444433 PP

>> DUF5071  Domain of unknown function (DUF5071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0     0.001       2.6      13      40 ..     311     338 ..     307     343 .. 0.91
   2 ?    3.1   0.0     0.041   1.1e+02      20      51 ..     350     381 ..     339     393 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.001
                 HHHTT--HHHHGGGHHHHHGGGS-TTST CS
     DUF5071  13 rkLkelvaeelkplvpeLLeWlqDlNwP 40 
                 ++L+ +++  l+   ++L+ W +D+ wP
  KKY22657.1 311 DSLTDMSDGALEKATEQLISWTKDIAWP 338
                 689999999******************* PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.041
                 HHHHGGGHHHHHGGGS-TTSTTHHHHHHHHHH CS
     DUF5071  20 aeelkplvpeLLeWlqDlNwPiaspiaelLar 51 
                 a+   +  ++  +++qD  wP  + i+ +L  
  KKY22657.1 350 ANTADECCEKTSTFMQDRYWPFTKIIRVYLNA 381
                 55566666677789**********99999975 PP

>> Orthopox_A49R  Orthopoxvirus A49R protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00012      0.31      92     143 ..     623     674 ..     595     691 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
                    HHHHHHHGGGGSS-HHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHTT---H CS
  Orthopox_A49R  92 dcivnkfmsfykdnlenivdaiitlkyimnnpdfkttyaevlgsriadidik 143
                    d + + + s++k+ l+ i   +++l+ +m n  + tt  e + +ri di+  
     KKY22657.1 623 DMLEEEVPSIFKEILQSINRELLSLQSLMRNAGLVTTLVEGIDARIQDIEYS 674
                    666777889****************************************854 PP

>> CelTOS  Cell-traversal protein for ookinetes and sporozoites
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.17   4.3e+02      50      90 ..     236     276 ..     210     279 .. 0.83
   2 ?   -1.2   0.0       1.1   2.7e+03      31      57 ..     627     653 ..     607     667 .. 0.62
   3 ?    9.4   2.2   0.00054       1.4      12      72 ..     748     808 ..     741     825 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.17
      CelTOS  50 vaasfLqsgfdvkkkaKeiiKkvllevlksllpvvekivad 90 
                 va++ ++  +   +++ e+iK+ l +  +  lp vek + d
  KKY22657.1 236 VAPVVIEVEYLSSTEIEEMIKELLWNFRQIYLPWVEKGIND 276
                 677778877777899*********************99987 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.1
      CelTOS  31 elvdliandlekelqknslvaasfLqs 57 
                 e v  i +++ ++++++ l   s++ +
  KKY22657.1 627 EEVPSIFKEILQSINRELLSLQSLMRN 653
                 334455566666666665555555554 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00054
      CelTOS  12 slssklseiiradldskgdelvdliandlekelqknslvaasfLqsgfdvkkkaKeiiKkv 72 
                 s +s+l +i  ++l+ k d++v  i+nd+  +l+ n   + +  ++    k++  e  Kkv
  KKY22657.1 748 SAMSFLIKITFRQLEIKIDQVVLSITNDVTMALKSNRTRSRTAYENDLATKRQKAELLKKV 808
                 6789999*****************************9777777787777777777777765 PP

>> DUF573  Protein of unknown function, DUF573
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       2.7   6.9e+03      43      65 ..     528     550 ..     508     564 .. 0.62
   2 ?   11.8   1.3   0.00011      0.28      10      69 ..     762     821 ..     759     825 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.7
      DUF573  43 lssdvsksqlseKlrrLkkkyrn 65 
                 + ++ +k+++ e +r  ++ ++ 
  KKY22657.1 528 TAVEDTKKKILETIRDSRENFKD 550
                 44455566666666666666654 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00011
      DUF573  10 EielLqglldfksktgtspksdldafyeavksslssdvsksqlseKlrrLkkkyrnavsk 69 
                 Ei++ q +l+ +++     ks+ +    a ++ l ++ +k +l +K+r+Lkk++++ v k
  KKY22657.1 762 EIKIDQVVLSITNDVTMALKSNRTRSRTAYENDLATKRQKAELLKKVRTLKKRHEESVLK 821
                 677777777777766666668888888999999*********************998876 PP

>> Mer2  Mer2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.083   2.1e+02     115     155 ..     513     553 ..     480     561 .. 0.82
   2 ?   -1.6   0.0      0.77     2e+03      65      76 ..     638     649 ..     609     706 .. 0.57
   3 ?    7.0   1.8    0.0018       4.6      86     154 ..     753     819 ..     722     825 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.083
        Mer2 115 vkkhksntdtksnLtellekkeakileeidkkqtkleksvd 155
                 + +h+ n +t   +   +e++++kile i++  +++++s +
  KKY22657.1 513 EPQHTYNEETAISIHTAVEDTKKKILETIRDSRENFKDSHR 553
                 567888888888899999***********999999988865 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.77
        Mer2  65 sklnellidlke 76 
                 +++n +l++l+ 
  KKY22657.1 638 QSINRELLSLQS 649
                 222222222222 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0018
        Mer2  86 eikdlikdLsvkienqlskvskavldklkvkkhksntdtksnLtellekkeakileeidkkqtkleksv 154
                  ik   ++L++ki++    + ++v+  lk+++++s+t ++++L    ++++a++l++++  +++ e+sv
  KKY22657.1 753 LIKITFRQLEIKIDQVVLSITNDVTMALKSNRTRSRTAYENDLAT--KRQKAELLKKVRTLKKRHEESV 819
                 5777889**********************************9975..6888999999998888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (827 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       943  (0.0525964); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 5234.57
//
Query:       KKY22658.1  [L=619]
Description: putative hydroxyindole o [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-15   55.0   0.0    1.1e-14   54.3   0.0    1.2  1  Methyltransf_2  O-methyltransferase domain
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.19   11.7   0.0    1.3  1  HTH_Crp_2       Crp-like helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   1.2e-18   1.1e-14      65     172 ..     152     258 ..     145     280 .. 0.81

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 1.2e-18
                     EEEEET-TTSHHHHHHHHH-TT-..EEEEEE-HHHHHHHHHHS-----TTEEEEES-TTT.S-----SEEEEESSGGGS-HHHHHHHHHHHHHH- CS
  Methyltransf_2  65 slvDvGGGtGalakaivsayPti..kvivfDlpeVveaAkehlsageeervefvgGdffk.dslPeaDaillkrvlhDwsdekcvklLkrvkkal 156
                     +lvDvGG  G  + +  +++P+   ++++ Dlp V+e+ k+      e+ +e +  dff  +++  a a+ + +vlhDw d++c+++L+++ +a+
      KKY22658.1 152 MLVDVGGSLGHDIVEFYHKHPKApgRLVLQDLPAVIEHVKDI-----ERTIEPMSHDFFTeQPIRGARAYYMHSVLHDWPDAACQQILAQITSAM 241
                     69*******************984467899**********99.....999*********524677****************************** PP

                     -TT-EEEEEE--.--TT CS
  Methyltransf_2 157 pagGkvivveav.lgad 172
                      +g   ++++   ++  
      KKY22658.1 242 DPGYSKLLINENvIPDI 258
                     99976666655404443 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.2e-05      0.19      21      54 ..       8      42 ..       1      53 [. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.2e-05
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ET CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglis.rg 54
                p++++el+   G+ +  +sr+l++L   g i+  g
  KKY22658.1  8 PVSNAELSGWSGADPALLSRLLKHLAAMGTIEeSG 42
                89*****************************9434 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.52
# Mc/sec: 3552.56
//
Query:       KKY22659.1  [L=268]
Description: putative integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0039   16.8   3.5     0.0061   16.2   3.5    1.2  1  RTA1             RTA1 like protein
  ------ inclusion threshold ------
        1.5    9.2  11.4        2.6    8.5   0.5    3.6  3  Phage_holin_5_2  Phage holin family Hol44, in holin superfami


Domain annotation for each model (and alignments):
>> RTA1  RTA1 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   3.5   6.8e-07    0.0061      22     159 ..      10     147 ..       4     155 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.8e-07
        RTA1  22 tskaslgpfiiqivlll..laPafiaaaiYmllgrlilllgeelsllrpklytkiFvvlDvvslllqaaGGglaasasssaeaklGeniiiaGlalQvv 118
                  s++++gp i+ i+  l  +   f+ a iY  ++ l     +++ ++    + ++Fv l +vs+    aG g  +s  s++e +++    iaG a  v+
  KKY22659.1  10 SSQDDKGPTILAIMWSLtgITTLFVIARIYTRFKILKAGGPDDYLIVISLCIGYLFVSLTTVSV--D-AGIGKHSSTLSTKEFEKAVMFDIAGFAPGVF 105
                 4556677777777654411678899*******98776666888888899999****99988885..4.4545444444444599999999********* PP

        RTA1 119 vlvvFlllaldFllrvr.kskkfkkfllalyaavlliliRsi 159
                 ++vv  + ++  l+r+  ++kk+k+fl+al+ ++ l ++ ++
  KKY22659.1 106 SFVVPKMAIVVLLIRIFnPTKKTKIFLWALVGTSGLFILGCV 147
                 *****************98899**********9999888887 PP

>> Phage_holin_5_2  Phage holin family Hol44, in holin superfamily V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.4     0.014   1.3e+02       7      41 ..      34      72 ..      29     109 .. 0.66
   2 ?    8.5   0.5   0.00029       2.6      32      64 ..     143     190 ..     108     195 .. 0.76
   3 ?    3.8   0.4     0.008        72      12      42 ..     202     233 ..     192     248 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.014
  Phage_holin_5_2  7 iiGeilKktekvkd....kyIPlilgiiGiilgvvivft 41
                     +i+ i+   + +k      y ++i ++iG ++  + ++ 
       KKY22659.1 34 VIARIYTRFKILKAggpdDYLIVISLCIGYLFVSLTTVS 72
                     555555555555445555999999999998887444444 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00029
  Phage_holin_5_2  32 iilgvvivftadfqaedilifg...............aiiqGilsgga 64 
                      i+ +vvi+++++ +a+++++ +               ai+ G++sg++
       KKY22659.1 143 ILGCVVILYAQCSPAKAMWTPTlehytcwnpwilvdyAIVAGAISGLV 190
                      45677888887888888888778888888888888**********997 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.008
  Phage_holin_5_2  12 lKktekvkdkyI.PlilgiiGiilgvvivfta 42 
                      l+k    k+k I  +  + +Gii +++ v+ +
       KKY22659.1 202 LRKLHIEKKKKIgLCAALGLGIIACAITVYKC 233
                      44444444444413455667888887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1885.96
//
Query:       KKY22660.1  [L=330]
Description: putative family transcriptional regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-41  140.8   0.0    6.3e-41  140.5   0.0    1.1  1  NmrA             NmrA-like family
    2.4e-12   47.2   0.0    3.2e-12   46.7   0.0    1.1  1  NAD_binding_10   NAD(P)H-binding
    9.5e-06   24.8   0.0    1.3e-05   24.4   0.0    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    0.00063   19.3   0.0    0.00093   18.7   0.0    1.3  1  Epimerase        NAD dependent epimerase/dehydratase family
     0.0011   19.2   0.0     0.0018   18.5   0.0    1.4  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
  ------ inclusion threshold ------
      0.027   14.9   0.1      0.065   13.7   0.0    1.8  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
      0.086   13.1   0.0       0.15   12.3   0.0    1.4  1  TrkA_N           TrkA-N domain


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.5   0.0   2.5e-44   6.3e-41       1     222 [.       8     246 ..       8     255 .. 0.93

  Alignments for each domain:
  == domain 1  score: 140.5 bits;  conditional E-value: 2.5e-44
                 EEESSTTSHHHHHHHHHHHH.....HT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG.....S-HHHHHHHHHHHH CS
        NmrA   1 IlviGaTGrqGksvvrallk.....aghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy.....skeiedgkklvdAa 89 
                 I+v+GaTG+qG+sv++ ll+     +++++r ++Rd+++  a++l ++Gve +++dl d  sl+ alk+++ vf+vt+++     ++ei++gk++vdA 
  KKY22660.1   8 ITVFGATGNQGSSVIKTLLShpslaSQYHIRGITRDVNKPSAQALRSQGVEPIQADLSDPTSLRLALKDSHSVFAVTNYWdtmskENEIQQGKNIVDAC 106
                 89***************999899989************************************************************************* PP

                 HHHS..-SEEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHC........TS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS- CS
        NmrA  90 keaG..vkhfiySslgddndrsnaeepavphfdsKaeieeyvral........gipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkav 178
                       v+h+i S+l++  + +n +  +v+hfdsKae+  y +a          ++ t +++g f +n++s++      d + +  ++ l+ +  +  v
  KKY22660.1 107 LSSDsaVQHLILSTLPNVTQLTNNQLTNVEHFDSKAEVSAYAEAHkkspssnkNLIVTHFMPGYFSSNIKSTISI----DPSSGLPTCMLPFDRTATKV 201
                 998778**************************************9999988888888888888888888886666....66666668999999999999 PP

                 EE.-HHHHHHHHHHHHHHHHHHHTTEEEEE-SEEE-HHHHHHHHH CS
        NmrA 179 ll.daeeDiGafvikilkdprklkgkriklagntlsgneivelfe 222
                 +l    +D+G++v+ +l   +++ g  i+  ++  ++ eiv++++
  KKY22660.1 202 PLfSPRDDTGPYVVGALVLSAAADGAFIQAVSDWKTPAEIVSVIT 246
                 998899***********************************9975 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   1.2e-15   3.2e-12       1     148 [.      12     173 ..      12     186 .. 0.76

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 1.2e-15
                     TTTSHHHHHHHHHHHHC-....T-EEEEEETT..HHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES-.....--TCCHHHHHHHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellarg....ghevtalvRn..peklaeleaeeglevvegdvtdvedlaealkgadaVvsal.....ggggkdeegaknivda 84 
                     GAtG+ G+ ++k ll++     +++++ ++R+  + ++++l+ ++g+e +++d++d+ +l+ alk+   V++ +      +++++ ++ knivda
      KKY22660.1  12 GATGNQGSSVIKTLLSHPslasQYHIRGITRDvnKPSAQALR-SQGVEPIQADLSDPTSLRLALKDSHSVFAVTnywdtMSKENEIQQGKNIVDA 105
                     9***************9999999********94344556676.7******************************66655444556666******* PP

                     HHH..CT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHH....SSSEEEEEEE-CEE- CS
  NAD_binding_10  85 ake..agvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellra....sgldwTivrpggLtd 148
                     +    + v++++l +  +v++ +++++ ++  e + + ++  ++ae++ ++    ++l  T   pg+++ 
      KKY22660.1 106 CLSsdSAVQHLILSTLPNVTQLTNNQLTNV--EHFDSKAEVSAYAEAHKKSpssnKNLIVTHFMPGYFSS 173
                     *762266*************8777777665..45555555555555544333322567777777776655 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   5.1e-09   1.3e-05       2     116 ..      10     120 ..       9     162 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 5.1e-09
   3Beta_HSD   2 vtGgaGFlGralvkeLvrlee.lkevrvlDl.respelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkGTrn 98 
                 v G++G  G++++k+L++  + + + ++  + r+ ++ + ++ +++  + i++D+ d  +l+ al++++ v+ +  + d ++  +e+      ++  +n
  KKY22660.1  10 VFGATGNQGSSVIKTLLSHPSlASQYHIRGItRDVNKPSAQALRSQGVEPIQADLSDPTSLRLALKDSHSVFAVTNYWDTMS--KEN-----EIQQGKN 101
                 89***************99886555555554133344445555666666*************************99999999..344.....356679* PP

   3Beta_HSD  99 vleacvka..gvrvlvYtSs 116
                 +++ac+++   v+ l+   +
  KKY22660.1 102 IVDACLSSdsAVQHLILS-T 120
                 *****8651168888854.3 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.6e-07   0.00093       1      71 [.       8      83 ..       8     152 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.6e-07
                EEEETTTSHHHHHHHHHHHHCT.....SEEEEEES-STTTTCHHCHHC..EEEE--TT-HHHHHHHHHHHT-SEEEE- CS
   Epimerase  1 ilVtGatGfiGsalvkallekg.....yevigldrlssasntarledl..elveldltdrsalerlfkeeqpdavihl 71
                i V GatG  Gs ++k ll++      y++ g++r+ ++   ++l+    e +++dl d+++l+ ++k+   + v+ +
  KKY22660.1  8 ITVFGATGNQGSSVIKTLLSHPslasqYHIRGITRDVNKPSAQALRSQgvEPIQADLSDPTSLRLALKD--SHSVFAV 83
                789******************99*99999*******99999888888899****************995..4444443 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0     7e-07    0.0018       1     101 [.       8     107 ..       8     154 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 7e-07
                      EEEE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT CS
  Sacchrp_dh_NADP   1 vliiGa.GsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppissldvlkaCietg 93 
                      + ++Ga G+ G++v++ l+ h ++ ++ ++ + +++  +  a++++++ +e+i+ d +++++ L  +lk+   v  + +++ +    +  i++g
       KKY22660.1   8 ITVFGAtGNQGSSVIKTLLSHPSLASQYHIRGITRDVNKPSAQALRSQGVEPIQADLSDPTS-LRLALKDSHSVFAV-TNYWDTMSKENEIQQG 99 
                      6799*******************9885555555555555677778*****************.99999999665544.4444444456666666 PP

                      -EEEESS- CS
  Sacchrp_dh_NADP  94 vhyvdtsi 101
                       + vd++ 
       KKY22660.1 100 KNIVDACL 107
                      66666665 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.5e-05     0.065       2      95 ..       8     104 ..       7     131 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.5e-05
                     EEEETTTSHHHHHHHHHHHCTSSEEEEE.EEESTTTTTSBHHHHSG.GGTTTECEBEEEGGGGGC....TT-SEEEE-SCHHHHHHHHHHHHHTT CS
  Semialdhyde_dh   2 vaivGatGyvGqellrlLeehpevelvv.llsssrsaGkklaeavk.aleegkdlkvedvdeeel....kevdivflalpagvskelapklaeag 90 
                     + + GatG+ G+ +++ L +hp++   + + + +r+  k+ a+a + +  e  +  ++d  + +l    k+   vf  ++   +++ ++++ ++g
      KKY22660.1   8 ITVFGATGNQGSSVIKTLLSHPSLASQYhIRGITRDVNKPSAQALRsQGVEPIQADLSD--PTSLrlalKDSHSVFAVTNYWDTMSKENEI-QQG 99 
                     5799*******************887651445566677777766663333333333333..222111335555555555555555555555.555 PP

                     SEEEE CS
  Semialdhyde_dh  91 vkviD 95 
                       ++D
      KKY22660.1 100 KNIVD 104
                     55555 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.9e-05      0.15       6      69 ..      14      84 ..       8     102 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.9e-05
                -SHHHHHHHHHHHHTT......EEEEEEESSHHH..HHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE- CS
      TrkA_N  6 lGrvGrslaeeLsegg......kdvvvidkdeer..veelreeglevvvgdatdeevLeeagiekadaviaa 69
                 G+ G+s++++L ++       + + +i +d ++  ++ lr +g+e +++d +d+  L+ a  ++ +++ ++
  KKY22660.1 14 TGNQGSSVIKTLLSHPslasqyH-IRGITRDVNKpsAQALRSQGVEPIQADLSDPTSLRLALKDSHSVFAVT 84
                58999999999999545999965.999999988778**********************98855555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 2053.78
//
Query:       KKY22661.1  [L=375]
Description: putative alcohol dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-30  104.1   1.4    5.7e-30  103.4   0.7    1.7  2  ADH_N         Alcohol dehydrogenase GroES-like domain
    1.7e-13   50.7   0.0    2.4e-13   50.2   0.0    1.2  1  ADH_zinc_N    Zinc-binding dehydrogenase
    0.00071   19.5   0.2     0.0012   18.7   0.2    1.4  1  ADH_N_assoc   Alcohol dehydrogenase GroES-associated
    0.00072   20.6   0.0     0.0012   19.9   0.0    1.4  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.023   14.2   0.0      0.048   13.2   0.0    1.5  1  Glu_dehyd_C   Glucose dehydrogenase C-terminus
       0.18   11.1   0.0       0.28   10.5   0.0    1.2  1  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.7   1.9e-33   5.7e-30       3     105 ..      35     140 ..      33     145 .. 0.94
   2 ?   -2.7   0.0       1.8   5.2e+03      41      60 ..     277     302 ..     276     308 .. 0.52

  Alignments for each domain:
  == domain 1  score: 103.4 bits;  conditional E-value: 1.9e-33
                 EEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTS.....S-SSSB CS
       ADH_N   3 evlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvs.....ldGgfa 96 
                 + ++kv+++++Cg+Dlh+++g  + + ++++i GHE+vG v+++g++v+++++Gd+Vvv++ ++cg+C +C++ge + C+++ l+g s     +dGg+a
  KKY22661.1  35 NTILKVSSTALCGTDLHYYRG--HQKSPPGFICGHEFVGHVVKLGNDVQNFQIGDHVVVPFYTACGSCFYCTRGEASRCPHGVLFGNSspantVDGGQA 131
                 5689****************9..799999**********************************************************99********** PP

                 SEEEECGGG CS
       ADH_N  97 eyvvvpekk 105
                 eyv vp ++
  KKY22661.1 132 EYVRVPLAN 140
                 *****9443 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.8
                 EEEEEESTT-CS......--TT-EEE CS
       ADH_N  41 Geveevgpevkk......lkvGdrVv 60 
                 G++++vg ++++      l  G++V+
  KKY22661.1 277 GKISSVGVHTEDihfsgpLLYGKNVT 302
                 55555555555544444444555554 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0     8e-17   2.4e-13       1     109 [.     193     303 ..     193     323 .. 0.79

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 8e-17
                 HHHHHHH...HHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE CS
  ADH_zinc_N   1 gvGlaav...qlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee 96 
                 +vG++a+   q++  + a+++a+d+ + +l  a+klGa  +  +++ d+ ++i ++t  +g+d+v+e vG+ ++l+ a++l++p G++  vG+ +++ +
  KKY22661.1 193 PVGICAIactQYLTQSRARIFAIDPIPTRLSEAEKLGAIPLDPNST-DPHQAILAATSNRGADIVLEIVGHFDALQLAFNLIRPFGKISSVGVHTEDIH 290
                 688888733366667788*******************988766644.*********************************************9777666 PP

                 EEHHHHHHTT-EE CS
  ADH_zinc_N  97 fdlrnlllkeksi 109
                 f+   l  k++++
  KKY22661.1 291 FSGPLLYGKNVTM 303
                 7776666666665 PP

>> ADH_N_assoc  Alcohol dehydrogenase GroES-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.2     4e-07    0.0012       1      23 []       9      31 ..       9      31 .. 0.97

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 4e-07
  ADH_N_assoc  1 MKAVTyqGpkdVrVeeVPDPkIe 23
                 M+AV+++ p +V+Ve+ P P I+
   KKY22661.1  9 MRAVVFKAPFEVSVEDKPVPIIQ 31
                 ******************99997 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0     4e-07    0.0012      15     126 ..     243     352 ..     228     354 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4e-07
                   H..HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHH..HHH----E CS
  ADH_zinc_N_2  15 e..aatggegvDvvldtvggealleaslkvlpggGrlvsig.gpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaalie..eGklrpvv 106
                   +  aat+++g D+vl+ vg  ++l+ +++++++ G++ s+g    + +     ++   g++v++ f  +  +  +   +ee ++ +   +Gkl    
    KKY22661.1 243 AilAATSNRGADIVLEIVGHFDALQLAFNLIRPFGKISSVGvH--TEDIHFSGPL-LYGKNVTMAFGRC--PV-RSL-FEEALDVLVevQGKLGFLC 332
                   14578999***********555559999*99999***999944..2333333333.5566666666554..33.333.66666655412699***** PP

                   EEEEEGGGHHHHHHHHHSS- CS
  ADH_zinc_N_2 107 drvfpleeaaeAhrylesgr 126
                   +r ++leea +A+++ e+g 
    KKY22661.1 333 GRKMGLEEAGKAFKLFEKGE 352
                   *****************997 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.6e-05     0.048      33     199 ..     185     345 ..     177     355 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.6e-05
  Glu_dehyd_C  33 salvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYvdsret.pvdei..peaseemdlvvEaTGsakhafeaiealapnGva 127
                  +  ++G G++G+ a+a  +  ++   r++ ++    p  ++   e+lGa   d + t p + i  +  ++  d+v+E  G+  ++  a + ++p G +
   KKY22661.1 185 TIAIIGCGPVGICAIACTQYLTQSRARIFAIDP--IPT-RLSEAEKLGAIPLDPNSTdPHQAIlaATSNRGADIVLEIVGHFDALQLAFNLIRPFGKI 279
                  6789**********9999987777777777774..433.344579*******98776244555213446779************************** PP

  Glu_dehyd_C 128 aLlGvpedsevevdggelhrelvleNkalvGsvNanrrhfeaavdtLaalpeslldelvtkvvdldeleeAf 199
                    +Gv ++  +++ g  l  + v   ++ +G     r+ fe+a+d L +++ +l   l  ++++l+e+ +Af
   KKY22661.1 280 SSVGVHTED-IHFSGPLLYGKNV---TMAFGRC-PVRSLFEEALDVLVEVQGKL-GFLCGRKMGLEEAGKAF 345
                  *****9875.5554444444322...2334433.34556666666666665553.44555566666666555 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   9.2e-05      0.28      30      80 ..     185     238 ..     179     260 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.2e-05
                  EEEEESTSHHHHHHHHHHHHT...T-EEEEEESSHHHHHHHHHTTTCECEEHCH CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakgl...gakVtvlDvrparleqleslgakfvevlks 80 
                  ++ +iG G +G+ Aia  + l    a++ ++D  p+rl + e+lga  ++  + 
   KKY22661.1 185 TIAIIGCGPVGICAIACTQYLtqsRARIFAIDPIPTRLSEAEKLGAIPLDPNST 238
                  578*************99877333689*****************9988876444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.53
# Mc/sec: 2148.22
//
Query:       KKY22662.1  [L=331]
Description: hypothetical protein UCRPC4_g03162 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2057.01
//
Query:       KKY22663.1  [L=1533]
Description: putative abc metal ion transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-82  277.6  28.6    3.1e-43  148.4   8.5    2.2  2  ABC_membrane  ABC transporter transmembrane region
    9.8e-32  110.3   0.0    7.8e-18   65.3   0.0    2.8  2  ABC_tran      ABC transporter
    2.4e-10   40.2   0.4    0.00014   21.4   0.0    3.2  3  SMC_N         RecF/RecN/SMC N terminal domain
     0.0098   14.2   0.2      0.016   13.6   0.2    1.2  1  CDC45         CDC45-like protein
  ------ inclusion threshold ------
      0.025   14.6   0.9      0.097   12.7   0.0    2.2  2  Dynamin_N     Dynamin family
      0.067   12.3   0.0       0.17   11.0   0.0    1.6  1  CoiA          Competence protein CoiA-like family
      0.086   12.6   0.3        3.2    7.4   0.0    2.4  2  AAA_30        AAA domain
      0.089   12.4   0.0       0.28   10.7   0.0    1.8  1  AAA_27        AAA domain
       0.11   12.4   0.0       0.24   11.3   0.0    1.5  1  RsgA_GTPase   RsgA GTPase
       0.13   12.3   0.2       0.65   10.1   0.0    2.2  2  MMR_HSR1      50S ribosome-binding GTPase
        1.4    8.8   6.4        3.1    7.6   6.4    1.5  1  Sigma70_ner   Sigma-70, non-essential region
        3.9    7.2   8.5        3.2    7.5   7.0    1.5  1  DUF4637       Domain of unknown function (DUF4637)


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1  12.1   2.4e-42   3.5e-39       6     274 .]     300     571 ..     296     571 .. 0.96
   2 !  148.4   8.5   2.1e-46   3.1e-43       2     273 ..     966    1237 ..     965    1238 .. 0.97

  Alignments for each domain:
  == domain 1  score: 135.1 bits;  conditional E-value: 2.4e-42
                   HHHHHHHHHHHHHHHHHHHHHHHHHSS...TCCHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHCSTHHHHHHS CS
  ABC_membrane   6 llailagvlsplfplvlgrildtlldk...gdpet..ealnvysllllllglaqfilallqsyll..nvtgerlskrlrrklfkkilrqpmsffdtn 95 
                   + + ++++ s+++p +l  ++ +  ++   +       a+  ++++l+++++ + ++++l++y+      g+r+++ l ++++ k lr++ +   t+
    KKY22663.1 300 IIKTFSDCFSFIQPQLLRLLIAFAESYragN---EpqPAIRGVAIALAMFAVSVMQTSFLHQYFQrtFESGMRVKSSLTAMIYAKSLRLSNEGRATK 393
                   67899********************996533...4446***************************8777**************************** PP

                   CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH CS
  ABC_membrane  96 svGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirt 192
                   ++G+++++++ d ++l d++++   l++ +++++++ + +  ++g ++ l+++a+++l+++v+ via+++kkl+++++k+ + ++++++E+l++++ 
    KKY22663.1 394 TTGDIVNHMAVDQQRLADLTQFGQQLWSAPFQIVLCMISLHQLVGLSM-LAGIAVMILMVPVNGVIARLMKKLQITQMKNKDARTRLMTEILNNMKS 489
                   **********************************************96.************************************************ PP

                   HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 193 VkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfgal 274
                   +k++++  +f ++  + +++ + ++++k+ a+ ++  +t++ + +++++ ++  ++l  +  l+ + ++  l+lf++l+++l
    KKY22663.1 490 IKLYAWTTAFMNNLSHIRNDLELNTLRKIGAAQAFANFTWSTTPFLVSCSTFTVFVLTNDRPLTTEIVFPALTLFNLLTFPL 571
                   ******************************************************************************9986 PP

  == domain 2  score: 148.4 bits;  conditional E-value: 2.1e-46
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHCSTHHHHHHS CS
  ABC_membrane    2 iliillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyll.nvtgerlskrlrrklfkkilrqpmsffdtn 95  
                     ++i+++++a+ +s+  +++l+++ +t   +  + +  + +y+ +++++g++++ l+++q+ +l + +++ +s++l+ ++  +i+r pmsffdt+
    KKY22663.1  966 GIYIVALLCAQTASVGGNVWLKNWSETNERSYRNPK--VGKYIGIYFAFGIGSAGLVVVQTLILwIFCSIEASRKLHERMAFAIFRSPMSFFDTT 1058
                    699*************************99666666..***********************998799**************************** PP

                    CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH CS
  ABC_membrane   96 svGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgi 190 
                    ++G++l+r+++d++k++++l++++ ++f + +  + +l+++    + + +++++++++++  ++++ +++++lk+ ++ ++++++++++Esl g+
    KKY22663.1 1059 PAGRILNRFSSDIYKVDEVLARTFNMLFVNGARAIFTLGIVTAATPAFLILIIPLAFIYLAYQKYYLRTSRELKRLDSVSRSPVYAHFQESLGGL 1153
                    *********************************************************************************************** PP

                    HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.TSSTHHHHHHHHHHHHHHHHH CS
  ABC_membrane  191 rtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvis.gelsvgdlvvflslfailfga 273 
                     t++a++ +++f+ + e   + +++a++ +++an++l +++++lg++++++ + f++  v s + ls g +   +s+  +++++
    KKY22663.1 1154 STIRAYRQQHRFVLENEWRMDANLRAYFPSINANRWLAVRLEFLGSVIIFASATFAIISVTSrNGLSAGFIGLAMSYCLQITQS 1237
                    ***********************************************************9998899999999999999988876 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   5.2e-21   7.8e-18       1     134 [.     637     769 ..     637     772 .. 0.91
   2 !   42.0   0.0   8.1e-14   1.2e-10      52     137 .]    1315    1412 ..    1278    1412 .. 0.80

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 5.2e-21
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...............HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...............esdee 84 
                 l+n++++ ++ge+  +vG+ GaGKS++l+ ++g l + +Ge+             ++r +i+++ q p + + + v+en                +   
  KKY22663.1 637 LENINFSARKGELSCVVGRVGAGKSSFLQSILGDLWKINGEV-------------VVRGKIAYVAQSPWVMNAS-VKENivfghrwdphfynltVEACA 721
                 78****************************************.............99*************9999.********9999999954444444 PP

                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDE 134
                 +++ l++l + +  +t v++++ sLSgGqk r+ lara+  +++++llD+
  KKY22663.1 722 LTDDLATLPDGD--ATQVGERGISLSGGQKARLTLARAVYARADIYLLDD 769
                 777777777777..99999******************************8 PP

  == domain 2  score: 42.0 bits;  conditional E-value: 8.1e-14
                  B-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHHSTTGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   52 qeleslrkeigvlpqepqlfpeltvren......esdeeiekalsklglke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEp 135 
                  +++ + ++  +++  ++ lf+++ +r+n      ++d+e+  +l + +lk+           +v++++s+LS+Gq+q ++larall+ +++l+lDE+
  KKY22663.1 1315 EKIGVNHRAHKWVNLDAALFEGT-IRDNldprhvHDDSELWSVLGHARLKDhvaqldgQLSATVNEGGSNLSQGQRQLISLARALLTPSSILVLDEA 1410
                  45556666777888889999999.9999*****99999999999999999999999997788888999***************************** PP

                  TT CS
                  xx RF
    ABC_tran  136 ta 137 
                  ta
  KKY22663.1 1411 TA 1412
                  96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0026       3.9      25      48 ..     648     668 ..     638     702 .. 0.84
   2 !    8.6   0.0   0.00076       1.1     136     180 ..     743     783 ..     672     790 .. 0.82
   3 !   21.4   0.0   9.1e-08   0.00014     135     213 ..    1032    1457 ..     796    1462 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0026
                 SEEEEEESTTSSHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvL 48 
                 +++++vG+ G+GKs++l++i   L
  KKY22663.1 648 ELSCVVGRVGAGKSSFLQSI---L 668
                 5799***************9...4 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00076
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkva 180
                 +LSgG+k+     L +A   + +a +yllD++ +a D++  + + 
  KKY22663.1 743 SLSGGQKA----RLTLARAVYARADIYLLDDVLSAVDQHVGRHII 783
                 69*****7....677888899****************98766655 PP

  == domain 3  score: 21.4 bits;  conditional E-value: 9.1e-08
                  T................................................................................................ CS
                  x................................................................................................ RF
       SMC_N  135 e................................................................................................ 135 
                  +                                                                                                
  KKY22663.1 1032 Sieasrklhermafaifrspmsffdttpagrilnrfssdiykvdevlartfnmlfvngaraiftlgivtaatpafliliiplafiylayqkyylrts 1128
                  0555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY22663.1 1129 relkrldsvsrspvyahfqeslgglstirayrqqhrfvlenewrmdanlrayfpsinanrwlavrleflgsviifasatfaiisvtsrnglsagfig 1225
                  5555555555555555555555555555555556666666666666666666666666666666666666666666666666666666666666666 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY22663.1 1226 lamsyclqitqslnwivrqtvevetnivsvervleyanlpseapevifknrpnlgwpangavhfekystryregldlvlkditldikahekigvnhr 1322
                  6666666666666666666666666666666666666666667777777777777777777777777777777777777777777777777888888 PP

                  ............................................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS- CS
                  ............................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 ............................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLD 172 
                                                                              +LS G+++L++la         p+++ +lDe  aa D
  KKY22663.1 1323 ahkwvnldaalfegtirdnldprhvhddselwsvlgharlkdhvaqldgqlsatvneggsNLSQGQRQLISLARA----LLTPSSILVLDEATAAVD 1415
                  888888888888888888888888888888888888888888899999999999999999**********98754....589*************** PP

                  HHHHHHHHHHHH.HHCTTSEEEEE-SSHHHCCC-SCEEEEEE CS
                  xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  173 eknvkkvaellk.eksknaQfivislreemlekadklvgvtk 213 
                   +  + +   l+  + +n  +i i++r +++ ++d++v +++
  KKY22663.1 1416 VQTDALLQATLRtPAFQNRTIITIAHRINTILDSDRIVVLQQ 1457
                  ***********944677899999*********9999987665 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.2   1.1e-05     0.016     103     238 ..     804     971 ..     775     986 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
       CDC45 103 rivvfDDgd....ieeeleeereayealeeeeesdeede...eeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee.............s 181
                  i+v+ + d    i+++   e+  ye+l  ++ +  e      ++ee++dd+ +e ++ee+++++ +  + ++ ++ ++++e +e             +
  KKY22663.1 804 AITVLKEADfiglIKDKTVIEKGTYEQLMAMKGEVAELIrsaTNNEEEEDDSPSEMSDEEESDESATAVDIAQASDIEEAEEAREavgqlapirpaptN 902
                 566666666433345666667778888888887763222333222222222222222222222222222222222222222222234555455544432 PP

       CDC45 182 ddddersrkrrrse....................psakklrrqlkkerrkyeavlekyysqgtsygesvsslmYsLa 238
                 +++ +                             +++ +l++++ ke +++ +v ++ y++++  ++  ++ +Y +a
  KKY22663.1 903 TRKTS--------MatlrrastasfkgprgklsdEEDGNLKSKQTKETSEQGKVKWSVYREYAKTSNLYAVGIYIVA 971
                 22222........2344444468999999999888888999999999999999999999999999999999999876 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.5e-05     0.097       3      23 ..     652     672 ..     651     700 .. 0.86
   2 ?   -0.5   0.1      0.78   1.2e+03      29      73 ..     799     877 ..     782     912 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.5e-05
                 EEEBTTTTHHHHHHHHHTS-- CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlgedi 23 
                 vvG + +GKSS+l ++lg+  
  KKY22663.1 652 VVGRVGAGKSSFLQSILGDLW 672
                 9*****************855 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.78
                 SS---S-EEEEE......................................CCT---CCS...SSEEEET-EB--CHHHHHHHH CS
   Dynamin_N  29 nptTrrplelql......................................geeeeaseravkeelkekekkledfsevreeie 73 
                 ++ T ++++l+                                       +    ++e+ +  e+ ++e+ +e++++v+ ++ 
  KKY22663.1 799 ILATNAITVLKEadfiglikdktviekgtyeqlmamkgevaelirsatnnE----EEEDDSPSEMSDEEESDESATAVDIAQA 877
                 367777777777666666666666666666666666666666665543321....1223333444444333333333333333 PP

>> CoiA  Competence protein CoiA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011      0.17     248     357 ..     146     257 ..     117     275 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
        CoiA 248 keinrrrewvyllklye..kgqviqkllsiavfpqylaveitvdveeklkvlrksvsqqlfklrkifknlskleesiesflealksvrilaktsgks.. 342
                 +++n     ++++ +++   g+ + +l+s +++  yl+  +t +v+  l++l++  +  ++k +  + +l k +e    + + ++++++   t+  +  
  KKY22663.1 146 RQPNGVV--LFYWLFFIiaYGIKLRSLVSREFYKDYLPFFVTFTVSTGLAILEFGFEYLIPKQQSAYDELGKEDECPMEYADVFQILTFSWMTPMMKyg 242
                 3333333..4777776522578889**************************************************9999********999999877622 PP

        CoiA 343 yvellkekkflhsae 357
                 y+++l ++    + e
  KKY22663.1 243 YNNFLTQDDLWNLRE 257
                 577777776655555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0022       3.2      17      47 ..     646     682 ..     640     700 .. 0.77
   2 ?    2.4   0.1     0.072   1.1e+02      50     112 ..    1357    1425 ..    1345    1432 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0022
      AAA_30  17 gdrvavltGpAGtGKttalkal.reaweaag.....g 47 
                 +  +++++G+ G+GK+  l+++  ++w+ +g     g
  KKY22663.1 646 KGELSCVVGRVGAGKSSFLQSIlGDLWKINGevvvrG 682
                 44599***************99889999888333333 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.072
      AAA_30   50 iglAptgkaAkvLaeelgieastiakllkrlk......grarlepgtllivDEagmvdtkqlaallkaa 112 
                  +g A  +   ++L  +l ++ +   + l++ +      +ra l+p+++l+ DEa  +   q++all+a 
  KKY22663.1 1357 LGHARLKDHVAQLDGQLSATVNEGGSNLSQGQrqlislARALLTPSSILVLDEATAAVDVQTDALLQAT 1425
                  55555555555555555544444444443333677788778999************9999999999875 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00019      0.28      12      53 ..     633     674 ..     630     678 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00019
      AAA_27  12 GkftdrsldfsaeeadlhliyGpNEAGKstalrAisdllfGi 53 
                 G +t ++++fsa + +l  ++G   AGKs+ l++i   l+ i
  KKY22663.1 633 GDVTLENINFSARKGELSCVVGRVGAGKSSFLQSILGDLWKI 674
                 7788899***************************98777766 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00016      0.24      88     123 ..     635     671 ..     602     683 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00016
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallpel 123
                   +le+++   ++ ++s++vG  G+GKS+++ ++l++l
   KKY22663.1 635 VTLENINFSARKgELSCVVGRVGAGKSSFLQSILGDL 671
                  4577888877777*******************99875 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       8.2   1.2e+04      12      38 ..     371     397 ..     371     420 .. 0.58
   2 ?   10.1   0.0   0.00043      0.65       3      23 ..     651     671 ..     650     702 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 8.2
                 HHHHHHHHHTSTEEESSSTTSSSSEEE CS
    MMR_HSR1  12 KStLinaltgekaivsdkpgtTrdine 38 
                 KS+L   +  +  + s++  +T+++  
  KKY22663.1 371 KSSLTAMIYAKSLRLSNEGRATKTTGD 397
                 899998888875555555544444322 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00043
                 EEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgek 23 
                 ++vGr  +GKS+++++++g+ 
  KKY22663.1 651 CVVGRVGAGKSSFLQSILGDL 671
                 69***************9863 PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   6.4     0.002       3.1      12      89 ..     828     905 ..     825     946 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.002
  Sigma70_ner  12 ydrveageirLrdiidGflDeeeeeeeeeeeedeeeeeeeeddd...eeeseseaadeeelkeealekfeelreqyeklrk 89 
                  y+++ a + +++++i   +++eeee+++ +   e ++eee d+     + +++++ +e+e   ea  +++ +r +  ++rk
   KKY22663.1 828 YEQLMAMKGEVAELIRSATNNEEEEDDSPS---EMSDEEESDESataVDIAQASDIEEAEEAREAVGQLAPIRPAPTNTRK 905
                  89999999********99984333333333...233333222222344556666666666666777777777777777777 PP

>> DUF4637  Domain of unknown function (DUF4637)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   7.0    0.0022       3.2       9      85 ..     838     917 ..     833     927 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0022
     DUF4637   9 leeleareveeeeaeeeseeedeeedraeeesaaege.eesreaeeaegrekgsvsysPlrqess...aqevallrradsg 85 
                 + el  + +++ee+e++s +e ++e++ ++esa++ + +++ ++eeae   +     +P+r  ++      +a lrra ++
  KKY22663.1 838 VAELIRSATNNEEEEDDSPSEMSDEEE-SDESATAVDiAQASDIEEAEEAREAVGQLAPIRPAPTntrKTSMATLRRASTA 917
                 555555555666656666555555444.45555555547888888888775555578999976541114568999998753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1058  (0.0590105); expected 358.6 (0.02)
Passed bias filter:                      626  (0.0349155); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.50
# Mc/sec: 9274.57
//
Query:       KKY22664.1  [L=655]
Description: putative c2h2 finger and ankyrin domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-63  213.3   0.1    2.6e-63  212.3   0.1    1.5  1  bVLRF1       bacteroidetes VLRF1 release factor
  ------ inclusion threshold ------
      0.034   14.7   0.0      0.098   13.3   0.0    1.8  1  Ank_3        Ankyrin repeat
      0.053   14.0   0.2       0.13   12.7   0.2    1.7  1  Ank          Ankyrin repeat
      0.071   13.4   0.2       0.14   12.5   0.2    1.5  1  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
       0.16   12.3   0.0       0.43   11.0   0.0    1.8  1  Ank_5        Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> bVLRF1  bacteroidetes VLRF1 release factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.3   0.1   7.3e-67   2.6e-63       2     148 ..     241     397 ..     240     398 .. 0.98

  Alignments for each domain:
  == domain 1  score: 212.3 bits;  conditional E-value: 7.3e-67
      bVLRF1   2 vllmlggGhfAgavvslkkkk.........eaevlahktfhrYttRrkqGgsQsandkakgkaksaGaslRryneqalkedirellkewkeeiekseli 91 
                 +l+m+ggGhfA+++v+l+++          +a+v+ahktfhrYttRrkqGg+Qs++d++kg+ +saG+slRryne al++dir+ll+ewk++i++sel+
  KKY22664.1 241 FLCMVGGGHFAAMIVALAPEVtkkggiderRARVIAHKTFHRYTTRRKQGGAQSSKDNSKGNIHSAGSSLRRYNEVALENDIRNLLSEWKSMIDTSELL 339
                 79***************999999**************************************************************************** PP

      bVLRF1  92 firasgksnrkilfg.yeeavlkkkdprlrsiPfttrrptlselkrvleeltrvkvse 148
                 fira+g++nr++lfg y++++l+++dpr+r +Pf+trr+t+sel+r+++eltr+kvs+
  KKY22664.1 340 FIRATGTTNRRTLFGpYDGQILRNNDPRIRGFPFSTRRATQSELMRCFTELTRLKVST 397
                 ***************9***************************************986 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.7e-05     0.098       4      31 .]     477     503 ..     474     503 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.7e-05
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadvna 31 
                 tpLhlA +s+++++v  Ll  k +++n+
  KKY22664.1 477 TPLHLASSSNSPALVLSLLT-KPIPPNH 503
                 9******************9.8999985 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   3.7e-05      0.13       4      31 ..     477     512 ..     477     513 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.7e-05
                 BHHHHHHHHTT.HHHHHHH...H...TT.TSTTCBT CS
         Ank   4 TPLHlAatngk.kriiklL...L...hG.Anlnald 31 
                 TPLHlA++ ++ + +++lL   +   hG A++++ +
  KKY22664.1 477 TPLHLASSSNSpALVLSLLtkpIppnHGtADPTIPN 512
                 9******766679999*9998889988999999876 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   3.9e-05      0.14       4      27 .]      67      90 ..      66      90 .. 0.97

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.9e-05
                 BTTTTBBBSSHHHHHCCTTSHHHH CS
  zf-C2H2_jaz  4 CvlCdKyFksenaldnHlkSKkHK 27
                 C lC+  F s    ++H++S  H+
   KKY22664.1 67 CSLCQAKFASVAEQREHVRSDLHR 90
                 *********************997 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012      0.43       8      56 .]     472     522 ..     467     522 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLl.......argadlnltdsrGltaldlA 56 
                 ++ ++     tpLh+A++ +++ +v+ Ll          ad+++ +s+G  ++dlA
  KKY22664.1 472 NHHTP-----TPLHLASSSNSPALVLSLLtkpippnHGTADPTIPNSSGTPPYDLA 522
                 55555.....*******************888888555688888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1478  (0.0824363); expected 358.6 (0.02)
Passed bias filter:                      595  (0.0331865); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.51
# Mc/sec: 3898.17
//
Query:       KKY22665.1  [L=291]
Description: putative glutathione s-transferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-16   58.3   0.0    1.1e-15   57.6   0.0    1.4  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    2.7e-15   56.5   0.0    4.4e-15   55.8   0.0    1.3  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    3.5e-11   43.3   0.1    6.6e-11   42.4   0.1    1.5  1  GST_N     Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
       0.02   14.9   0.1      0.074   13.1   0.0    1.9  2  GST_C_2   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0   2.5e-19   1.1e-15       1      69 [.      38     111 ..      38     112 .. 0.90

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 2.5e-19
                 S-HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-.....CTTE......EEESHHHHHHHHHH CS
     GST_N_2   1 aCPwahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwd.....kdgq......vineSseIlrylet 69 
                 +CP+++R++++l++++++++++++    ++++ks+ef++lnprg VP+L +               +++eS  I +yl++
  KKY22665.1  38 FCPFVQRTWLTLEELKVPYQYIEI----NPYHKSPEFLALNPRGLVPALGVpvkvsG--DghrelkPLYESNIINEYLDA 111
                 8***********************....9**********************665541..2457788************96 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   9.9e-19   4.4e-15       2      74 ..      34     116 ..      33     117 .. 0.89

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 9.9e-19
                 ES-TTSHHHHHHHHHHHHHT--EEEE---TTTTHHHHHHH-TT--SSEE.....ETTS-.....EEESHHHHHHHHHHHH-GG CS
     GST_N_3   2 ygfpaSpyarrvrlaLnekglpvevvevtpgehdeellaknplgkvPvL.....eddge.....altdSlaIidyLeelypgp 74 
                 y   ++p+++r +l+L+e+++p+++ e++p ++++e+la np+g vP+L     + +++      l++S  I +yL+ +y++p
  KKY22665.1  34 YAGWFCPFVQRTWLTLEELKVPYQYIEINPYHKSPEFLALNPRGLVPALgvpvkVSGDGhrelkPLYESNIINEYLDATYADP 116
                 55569*********************************************99874332246888****************987 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.1   1.5e-14   6.6e-11       2      75 ..      30     110 ..      29     111 .. 0.95

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 1.5e-14
                 EEEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET..........TEEEESHHHHHHHHH CS
       GST_N   2 vltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedn..........gkkltESraIleYia 75 
                 +l+ly ++ +p++ r+ l+l++++v+y+++++++    +kspe+l lnp g vPaL ++           k+l ES++I+eY++
  KKY22665.1  30 PLKLYAGWFCPFVQRTWLTLEELKVPYQYIEINP---YHKSPEFLALNPRGLVPALGVPvkvsgdghreLKPLYESNIINEYLD 110
                 79*******************************9...9999***************9999999998887799**********97 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.55   2.5e+03      43      62 ..      48      69 ..      34      72 .. 0.55
   2 ?   13.1   0.0   1.6e-05     0.074       4      53 ..     160     210 ..     157     247 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.55
                HHHHHHHHHHS----..TT-HH CS
     GST_C_2 43 flvrlraagpgfdir..eaypn 62
                +l  l++++++++i   ++ p 
  KKY22665.1 48 TLEELKVPYQYIEINpyHKSPE 69
                3444556666667765566665 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.6e-05
                 HCHHHHHCCHCHHHCTTT---SS..CTTCS--HHHHHHHHHHHHHHHHHHS CS
     GST_C_2   4 veraleqldaaldaleahLadsp.flfGdqptlaDialapflvrlraagpg 53 
                 +e+a+eql +a+ ++ ++      f+ G + ++ D +lap+  rl  + ++
  KKY22665.1 160 LEEAREQLLQAIVTWTQEADPEGpFWNGKEVSMIDLTLAPWNERLFLIEHY 210
                 678888888888888777554446*****************9999887554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2048.49
//
Query:       KKY22666.1  [L=981]
Description: putative sec23 sec24 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-53  181.4   0.0    4.6e-53  180.3   0.0    1.5  1  Sec23_trunk     Sec23/Sec24 trunk domain
    5.9e-23   80.6   0.0    1.3e-22   79.6   0.0    1.6  1  Sec23_helical   Sec23/Sec24 helical domain
    5.7e-15   55.1   4.4    1.1e-14   54.2   4.4    1.5  1  zf-Sec23_Sec24  Sec23/Sec24 zinc finger
    2.7e-10   40.9   0.0    7.4e-10   39.4   0.0    1.7  1  Sec23_BS        Sec23/Sec24 beta-sandwich domain
    6.7e-05   22.7   0.0    0.00016   21.5   0.0    1.6  1  Gelsolin        Gelsolin repeat
  ------ inclusion threshold ------
      0.024   14.5   0.0      0.043   13.6   0.0    1.3  1  SLS             Mitochondrial inner-membrane-bound regulator
       0.14   11.9   0.0       0.28   10.9   0.0    1.4  1  DUF1678         Protein of unknown function (DUF1678)
        5.8    7.2   5.1        2.9    8.1   0.5    2.6  2  Lem_TRP         Leucophaea maderae tachykinin-related peptide


Domain annotation for each model (and alignments):
>> Sec23_trunk  Sec23/Sec24 trunk domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.3   0.0   2.1e-56   4.6e-53       4     242 ..     364     614 ..     361     615 .. 0.95

  Alignments for each domain:
  == domain 1  score: 180.3 bits;  conditional E-value: 2.1e-56
                  -EEEEEEE-SHHHHHHTHHHHHHHHHHHHC..TTSST..............STT-EEEEEEESSSEEEEETSTTSSSSEEEEECHTTSCCSSTSSSSS CS
  Sec23_trunk   4 pvflFviDvsleaikegelkalkeslkqsL..dllPe..............epralvglitfdsvvhffelkselrqpkelvvsdlqdvflpladrlL 85 
                  + +lF+iDvs+ea++ + +++++e +++sL  d+l +               + ++vg++tfd+ vhf++l+s+l+ ++++v++dl+d+f++ +d+l+
   KKY22666.1 364 LRWLFLIDVSQEAVNRDFIRTICEGIRKSLydDELEDgvenaddqppvsrlPEGSKVGIVTFDKDVHFYNLSSKLDRAQMMVMTDLEDPFVAISDGLF 461
                  5789**************************9889996799****9999998899******************************************** PP

                  EETTTTHHHHHHHHHHHHHHSTT-TTC-----HHHHHHHHHHHHCHCTS-EEEEEEESS---SSTTTSS-SBTTSCCTSSTTCHHCHSCSSSCHHHHH CS
  Sec23_trunk  86 vplseseavledlLeelpemfavtagkrperalgpalkaavellkavetggkiivfvgslptvgaggklksredeslldidkekaklvkkadkfYkkL 183
                  v++ es+ v+ +lL++lp++f++   k+pe al p ++aa+++l+  +tggki++  ++lpt g+ g l  r+  ++ d+++e +k++ ++   +kk 
   KKY22666.1 462 VDPYESKVVILNLLDSLPSLFTTV--KNPEPALLPTINAALSALS--CTGGKIVCALSALPTWGP-GRLFLRDTGKMADTNHE-KKFLTTEHAGWKKA 553
                  ************************..*******************..779***************.*****************.777777788***** PP

                  HHHHHHCTEEEEEEEECS..S--SHHHHTHHHHTTT-EEEEETTTCCHHHHHHHHHHHHHH CS
  Sec23_trunk 184 akecvkqgisvDlFlfsl..dyvdlaelkqlaeltgGqvvlydsFsaekdasklkqdlkrv 242
                  a+++v++g+ +D F++++   y+d+a++++ + ++gG++++y++F+a++da kl +++k v
   KKY22666.1 554 ANDLVTSGVGIDYFIAAAggGYMDIATIGHTSAVSGGEIFYYPNFHAPRDALKLGSEMKHV 614
                  **************9986337***********************************99976 PP

>> Sec23_helical  Sec23/Sec24 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   5.6e-26   1.3e-22       1     101 [.     690     789 ..     690     791 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 5.6e-26
                    -HHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHHHHHHHH-------------GGGTTHHHHHHHHHTSTTTS--TT--HHHHHHHHHHHHH- CS
  Sec23_helical   1 DqeavtvllakqaidkalesgladarealdtslvdllsayrkvgasgsspsqlqlpeslklLPlyilallKspafrggnsvpaDervfalslllsl 96 
                    Dq+av+ ++akqa +k  e++l+d+r+ ++++ +d+++ yr++ ++++++sql+lpe lk++P+y l+l+Ks+ f+ggn+++ D rv+a + lls+
     KKY22666.1 690 DQDAVVGIIAKQAASKQAEKSLKDIRAGITEKAIDIMAGYRRNYSGSTPHSQLVLPEFLKEFPMYSLSLIKSRPFKGGNETS-DRRVHAARFLLSA 784
                    9*********************************************9***********************************.************9 PP

                    -HHHH CS
  Sec23_helical  97 pvdql 101
                    ++++l
     KKY22666.1 785 SLKEL 789
                    99887 PP

>> zf-Sec23_Sec24  Sec23/Sec24 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   4.4   4.8e-18   1.1e-14       1      39 []     286     324 ..     286     324 .. 0.99

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 4.8e-18
  zf-Sec23_Sec24   1 PirCrrCraylNpfckidfggkrwiCnfCnhknevppeY 39 
                     P+rCrrCr+y+Npf+++  gg++ +Cn+C++ n+v p+Y
      KKY22666.1 286 PPRCRRCRTYINPFMTFRSGGNKLVCNMCSFPNDVSPDY 324
                     99***********************************99 PP

>> Sec23_BS  Sec23/Sec24 beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   3.3e-13   7.4e-10      29      93 ..     614     676 ..     599     679 .. 0.89

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 3.3e-13
                 BESSEESECSESEEEEEEEETT--EEEEEEESSBTCTTSEEEEEEEEEEEETTSEEEEEEEEEEE CS
    Sec23_BS  29 vsekeiGeggtsewklcsldpdstlavyfdideklksgkqayiQfatlYthssgerrlRVttval 93 
                 v   e G g    ++l+s+d+d++l++ f++d kl+ + +a++Q a+lYt+++g+rr+R++++  
  KKY22666.1 614 VVRRETGFGAD--LELGSIDSDKALGIVFSYDGKLDPKLDAHFQSALLYTTATGQRRVRCHNIVA 676
                 44567888888..9************************************************975 PP

>> Gelsolin  Gelsolin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0     7e-08   0.00016       3      45 ..     818     862 ..     816     878 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 7e-08
                 EEEEEBSSSGGGEETTSEEEEEESSEEEEEEHTT..SHHHHHHHH CS
    Gelsolin   3 vlpkvvklsssslesgdcyLLdngftiflWiGke..ssqeeknfa 45 
                 vlp+  ++s+  +e+g++y++d g+ + lW+ ++  ++++e++f+
  KKY22666.1 818 VLPPTMRASYTYVEEGGVYIVDDGQIVILWLHAQvsPNLLEDLFG 862
                 6899999************************************98 PP

>> SLS  Mitochondrial inner-membrane-bound regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.9e-05     0.043      57     166 ..     684     785 ..     669     807 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.9e-05
         SLS  57 akielnrsenklritAtkstaeyieasineilknittetvd.lsellkl..skvdklkdl.lseelleelgrltntvievseddnnknskselkisalg 151
                 ++ +++ ++  + i+A++++ +++e+s+++i + it + +d +  + ++    + +  ++ + +e+l+e+   + + i+ s           +k    +
  KKY22666.1 684 ESMKFIDQDAVVGIIAKQAASKQAEKSLKDIRAGITEKAIDiMAGYRRNysG-S-TPHSQlVLPEFLKEFPMYSLSLIK-S---------RPFKGGNET 770
                 6678999999*******************************54444444743.3.33344479******9999999999.3.........234444457 PP

         SLS 152 edradlakRlLlwal 166
                 +dr   a R+Ll+a 
  KKY22666.1 771 SDRRVHAARFLLSAS 785
                 788888888888775 PP

>> DUF1678  Protein of unknown function (DUF1678)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.28      35      91 ..     897     953 ..     880     959 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
     DUF1678  35 rtvnGkvyGpyyvarwkrd.skfkrGrtlylGkeenesvsfvewlvsldrkevlklar 91 
                  tv G+    +  ar   d s f+  r l     +ne+ s+v+wlv  +r+ +l+la 
  KKY22666.1 897 STVRGSKSVHFQLARQGLDgSEFEFARMLV-EDRNNEAQSYVDWLVHIHRHIQLELAG 953
                 567788777888888776646788888775.55689*******************996 PP

>> Lem_TRP  Leucophaea maderae tachykinin-related peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.4      0.51   1.1e+03       3       8 ..     120     125 ..     118     126 .. 0.82
   2 ?    8.1   0.5    0.0013       2.9       2       8 ..     148     154 ..     147     155 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.51
     Lem_TRP   3 SMGFhG 8  
                 S GF+G
  KKY22666.1 120 SQGFQG 125
                 66***9 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0013
     Lem_TRP   2 PSMGFhG 8  
                 PS+GF+G
  KKY22666.1 148 PSLGFQG 154
                 ******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (981 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.49
# Mc/sec: 6020.91
//
Query:       KKY22667.1  [L=762]
Description: putative cleavage and polyadenylylation specificity [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-44  152.7   0.0      1e-44  152.7   0.0    2.9  3  CPSF100_C      Cleavage and polyadenylation factor 2 C-termin
    2.6e-17   63.1   0.0    8.6e-17   61.4   0.0    1.9  2  Beta-Casp      Beta-Casp domain
    2.6e-12   46.5   0.0    5.5e-12   45.5   0.0    1.6  1  RMMBL          Zn-dependent metallo-hydrolase RNA specificity
    5.4e-09   35.8   0.0    8.3e-09   35.2   0.0    1.3  1  Lactamase_B_6  Metallo-beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> CPSF100_C  Cleavage and polyadenylation factor 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.9      0.22   9.7e+02      50      82 ..     313     342 ..     270     364 .. 0.47
   2 ?   -2.2   0.7      0.92   4.1e+03      74      74 ..     445     445 ..     411     506 .. 0.53
   3 !  152.7   0.0   2.3e-48     1e-44       2     170 .]     591     756 ..     590     756 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.22
   CPSF100_C  50 eeeeeeeeaskkqklaeksekeaseeeseekke 82 
                 +++++  +a+++  +   +++++s++e++++++
  KKY22667.1 313 QSRNDTSPANEDDAA---DDASSSSSEDSDDEH 342
                 111112222221111...111112222222222 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.92
   CPSF100_C  74 e 74 
                 +
  KKY22667.1 445 N 445
                 1 PP

  == domain 3  score: 152.7 bits;  conditional E-value: 2.3e-48
   CPSF100_C   2 kLsdsLvksLkwqkveglevatvtgeleieeeaeeaeeeekeeeeeeeeeeeeeeeaskkqklaeksekeaseeeseekkeslptldvlpankas.vrs 99 
                 kLs++Lvk+L+wq+v++++++t+tg+l+        e++++e++  ++ ++++ ++++ +q+l        +e+++++ k+ +p+ldv+pan a+ +r 
  KKY22667.1 591 KLSRPLVKRLHWQNVRNIGIVTITGQLK-------GEDTAGEADLGSKPKKTKMMKEEPEQEL-------PTENADASGKDLMPVLDVVPANVAAaTRL 675
                 8**************************9.......2233333333333333333333333333.......456677788999*************9999 PP

   CPSF100_C 100 aaqplfvGdlrLadLkkallssgikAEFrgeGtLvidgaVaVrKsakGrieiegvvle..........tfyeVrkaiYegl 170
                 +a+p++vGdlrLadL+++++s+g+ AEFrgeGtL+idg +aVrK ++G++++eg+ l            fy V++ iYegl
  KKY22667.1 676 VAHPVHVGDLRLADLRRLMQSAGHAAEFRGEGTLLIDGFIAVRKLGTGKVVVEGAPLTaadslsahgsIFYHVKRRIYEGL 756
                 *******************************************************************************87 PP

>> Beta-Casp  Beta-Casp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   1.9e-20   8.6e-17       1     103 [.      89     235 ..      89     238 .. 0.91
   2 ?   -3.3   0.0       2.4   1.1e+04      90     105 ..     530     545 ..     520     547 .. 0.83

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 1.9e-20
                 HHHHHHHH..HCTT...TT..S-S-EEEEE-HHHHHHHHHGGGGGGE-SHH.....HHH..H...HH................................ CS
   Beta-Casp   1 aqellylLeelwkekk.le..dlklpiyldsplaskatevYkeyaeveaks.lewmesk..ke.eln................................ 60 
                 ++el+y+Le++w+e    +  +++ ++yl+s+ + ++++         a+s lewm+++  +e e                                  
  KKY22667.1  89 VLELAYVLEKAWQEADaADnvIKDSKLYLASKSSVATMRH--------ARSlLEWMDESisREfE-Geddlvangpkrtgikqsngqtakpgrpfefkh 178
                 68**********9987544864448***************........9**********855454.1589***************************** PP

                 ..............HS-SSEEEEES-TTSSSSHHHHHHHHHTTSTTSEEEESS---T CS
   Beta-Casp  61 ..............sskgpkvilassgmlegGrsrellkklledprntvilvgyqae 103
                               + +gp vi+as+ +l++G+s+ ++++++++ +n+vil+++q++
  KKY22667.1 179 vkllerksqvermlKAQGPRVIIASDLSLQWGFSKSIIREVCQQTENLVILTDKQSP 235
                 **************888*************************************987 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.4
                 STTSEEEESS---TTS CS
   Beta-Casp  90 dprntvilvgyqaegT 105
                  pr +++  g qae +
  KKY22667.1 530 SPRKLILVAGTQAETS 545
                 69999*****999865 PP

>> RMMBL  Zn-dependent metallo-hydrolase RNA specificity domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   1.2e-15   5.5e-12       3      53 ..     503     553 ..     501     573 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 1.2e-15
       RMMBL   3 pvkarieeidfSgHadknellelirklkprnvilvHGeeeatsalarllke 53 
                 p++ r +++df g +d+++l++li++++pr++ilv+G + +ts+la+++ke
  KKY22667.1 503 PANSRLAYVDFAGLHDRRSLQMLIPLISPRKLILVAGTQAETSSLAQDCKE 553
                 678899*******************************************63 PP

>> Lactamase_B_6  Metallo-beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   1.9e-12   8.3e-09     153     193 .]       1      43 [.       1      43 [. 0.95

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.9e-12
  Lactamase_B_6 153 sekivYavdwnhakeshLngaalldssg..kvleqllrptali 193
                    +e+ivYavdwn+a+e+++ gaa++++ g  +v+eql++ptali
     KKY22667.1   1 MESIVYAVDWNQARENVIGGAAWFGGIGgaEVIEQLRKPTALI 43 
                    699*********************9888789**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.35s 00:00:01.01 Elapsed: 00:00:00.49
# Mc/sec: 4711.94
//
Query:       KKY22668.1  [L=223]
Description: hypothetical protein UCRPC4_g03170 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.50
# Mc/sec: 1345.16
//
Query:       KKY22669.1  [L=349]
Description: putative nad dependent epimerase dehydratase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-08   33.1   0.1    7.3e-08   32.5   0.1    1.3  1  NAD_binding_10   NAD(P)H-binding
    1.3e-07   31.4   0.1     0.0013   18.2   0.1    2.1  2  Epimerase        NAD dependent epimerase/dehydratase family
    1.9e-07   31.5   0.0    6.3e-06   26.6   0.0    2.2  2  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
    2.1e-05   24.2   0.1    3.2e-05   23.6   0.1    1.2  1  NmrA             NmrA-like family
  ------ inclusion threshold ------
      0.011   16.4   0.0       0.02   15.6   0.0    1.4  1  DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomer
      0.026   15.3   0.0      0.057   14.2   0.0    1.5  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
      0.038   13.0   0.0       0.12   11.3   0.0    1.7  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
      0.053   12.7   0.0        0.1   11.7   0.0    1.5  1  NAD_binding_4    Male sterility protein
        0.1   12.7   0.0       0.18   11.9   0.0    1.4  1  DapB_N           Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.1   3.7e-11   7.3e-08       1      68 [.       9      78 ..       9     125 .. 0.92

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 3.7e-11
                    TTTSHHHHHHHHHHHHC-.T-EEEEEETTHHHCHHHHCT.TTCEEEE--TT-CCHHHHHHTT-SEEEES- CS
  NAD_binding_10  1 GAtGkvGrllvkellarg.ghevtalvRnpeklaeleae.eglevvegdvtdvedlaealkgadaVvsal 68
                    GAtG +G  +v+   +++ ++e+t +vRn++k a+++a+ +++++v gd+ +v+ +ae  + ad+V++ +
      KKY22669.1  9 GATGFIGGDAVTAVTEAHpDWELTCMVRNSDKGAKVAAKfSKIRLVYGDLDSVDLIAEEAAKADIVYTFA 78
                    9**********************************99888**************************9866 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   6.8e-07    0.0013       1      73 [.       5      79 ..       5      90 .. 0.81
   2 !   11.2   0.0   9.4e-05      0.19     150     239 ..     151     239 ..     144     239 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 6.8e-07
                EEEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHC...EEEE--TT-HHHHHHHHHHHT-SEEEE--S CS
   Epimerase  1 ilVtGatGfiGsalvkallekg..yevigldrlssasntarledl...elveldltdrsalerlfkeeqpdavihlAa 73
                ++V+GatGfiG   v a+ e++  +e++++ r+s+++++ + +     +lv++dl   + +++  +  ++d+v+ +A 
  KKY22669.1  5 VFVLGATGFIGGDAVTAVTEAHpdWELTCMVRNSDKGAKVAAK-FskiRLVYGDLDSVDLIAEEAA--KADIVYTFAD 79
                68**********9999999999888899999997776655444.2478*******99999998877..99****9975 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 9.4e-05
                 HHHHHHHHHHHT-EEEEEEESEEESTTS-TTS.TTSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEE CS
   Epimerase 150 eklveayaaqyglnaiilrlfnlyGprngege.vsrvipalirkilegkqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiyn 239
                 +k+v a+ ++  +++ i+ + ++yG ++g+++ +s  +p ++r +l+   e   +   ++ +  ++v+D+ +++ll+ e+ ++g ++ ++n
  KKY22669.1 151 DKVVLAAGNDL-IHTAIVCPPTIYGVGRGPDNqDSVQVPGVAREFLKHG-EAFSCRGSENIWCMIHVQDLSNLYLLLGEAAASGGNPATWN 239
                 45555555555.8999***********7666669999**********99.88888889**********************99998888777 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   3.2e-09   6.3e-06       1      71 [.       4      75 ..       4      94 .. 0.87
   2 ?    2.5   0.0     0.094   1.9e+02      38      80 ..     122     163 ..     117     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 3.2e-09
                    EEEEETTTSHHHHHHHHHHHC.TSSEEEEEEEESTTTTTSBHHHHSG.GGTTTECEBEEEGGGGGCTT-SEEE CS
  Semialdhyde_dh  1 kvaivGatGyvGqellrlLee.hpevelvvllsssrsaGkklaeavk.aleegkdlkvedvdeeelkevdivf 71
                    kv ++GatG +G + ++ + e hp++el++++ +s  +G k+a++++ +   + dl   d  +ee +++div 
      KKY22669.1  4 KVFVLGATGFIGGDAVTAVTEaHPDWELTCMVRNSD-KGAKVAAKFSkIRLVYGDLDSVDLIAEEAAKADIVY 75
                    799****************999********999999.999999999867778899999999999999999985 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.094
                     TSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHH CS
  Semialdhyde_dh  38 Gkklaeavkaleegkdlkvedvdeeelkevdivflalpagvsk 80 
                     G++l+++++  +++ +l+  + d ++ ++vd v+la++++  +
      KKY22669.1 122 GTPLEKVYNDYDGIGELTSLP-DHAIHRNVDKVVLAAGNDLIH 163
                     667777777667777777666.89999***********99765 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.1   1.6e-08   3.2e-05       1      73 [.       5      79 ..       5      92 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.6e-08
                EEESSTTSHHHHHHHHHHHH..HT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE--- CS
        NmrA  1 IlviGaTGrqGksvvrallk..aghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtg 73
                + v+GaTG +G+  v a+++   +++   +vR++++ +  + k +   lv gdld+ ++++e   ++d v+    
  KKY22669.1  5 VFVLGATGFIGGDAVTAVTEahPDWELTCMVRNSDKGAKVAAKFSKIRLVYGDLDSVDLIAEEAAKADIVYTFAD 79
                579***************998889**********66554444555579**********************98765 PP

>> DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.0     1e-05      0.02       1      71 [.       5      73 ..       5      99 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1e-05
                     EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTS CS
  DXP_reductoisom  1 vviLGsTGSIGtqtLdvieenpdkfevvalaagsnvellaeqakefkpklvavadeeaaeelkealkekel 71
                     v +LG+TG IG +++  ++e +  +e++ ++   n ++ a++a++f+   ++  d ++++ + e+ +++++
       KKY22669.1  5 VFVLGATGFIGGDAVTAVTEAHPDWELTCMVR--NSDKGAKVAAKFSKIRLVYGDLDSVDLIAEEAAKADI 73
                     689************999988889***99985..5578889999998888888888887777777765444 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.9e-05     0.057       3      69 ..       5      75 ..       4      94 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.9e-05
                  EEEETT.SHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE.EESSHH..HHHTCTTESEEEE- CS
  GFO_IDH_MocA  3 vaiiGa.Gkigskhlrplnesqrleevvalldpdaeraeavaesfgve.aysdle..elladpeidaviva 69
                  v + Ga G+ig + + ++ e+++++e+++ + ++ + a+ +a+  ++  +y dl+  +l a+++++a iv 
    KKY22669.1  5 VFVLGAtGFIGGDAVTAVTEAHPDWELTCMVRNSDKGAKVAAKFSKIRlVYGDLDsvDLIAEEAAKADIVY 75
                  77899999**999999***********************99999999999999885556666655555554 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.1e-05      0.12       2      75 ..       7      79 ..       6      99 .. 0.85
   2 ?   -1.3   0.0      0.42   8.3e+02     170     223 ..     161     220 ..     145     249 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.1e-05
   3Beta_HSD  2 vtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlas 75
                v+G++GF+G   v ++ ++++ +e+  + +r+s++  + + k+  + +++gD+ + d + e   ++d+v   a 
  KKY22669.1  7 VLGATGFIGGDAVTAVTEAHPDWELTCM-VRNSDKGAKVAAKFSKIRLVYGDLDSVDLIAEEAAKADIVYTFAD 79
                99***********************987.777888778888888888************999999999876654 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.42
   3Beta_HSD 170 rlyTcaLRpagiyGeg......dkllvp.llkqlaklglalfkigdeevlsdrvYvgNvaw 223
                  + T  + p +iyG g      d++ vp ++++ +k+g + f+   +e++  ++ v  ++ 
  KKY22669.1 161 LIHTAIVCPPTIYGVGrgpdnqDSVQVPgVAREFLKHG-EAFSCRGSENIWCMIHVQDLSN 220
                 35677778999998652221112223331345566666.4444444444555666665555 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.3e-05       0.1       3      35 ..       9      41 ..       7      74 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.3e-05
                   -TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHH CS
  NAD_binding_4  3 GaTGFLGkvLlekLLrttpevkiyllvRaksge 35
                   GaTGF+G   +    + +p+ +++++vR++++ 
     KKY22669.1  9 GATGFIGGDAVTAVTEAHPDWELTCMVRNSDKG 41
                   9***************************88763 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.2e-05      0.18       2      44 ..       4      45 ..       3      86 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.2e-05
                EEEEETTTSHHHHHHHHHHHH.STTEEEEEEEETTCSTTTTTBH CS
      DapB_N  2 kvavvGasGrmGkevvkavee.aedlelvaavdrkeselegkda 44
                kv v+Ga+G +G   v av+e ++d el++ v ++++   +k a
  KKY22669.1  4 KVFVLGATGFIGGDAVTAVTEaHPDWELTCMVRNSDK--GAKVA 45
                89**********999999988579*******999872..22223 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 2192.75
//
Query:       KKY22670.1  [L=345]
Description: putative aldehyde reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-41  141.9   0.0    2.4e-40  138.6   0.0    1.9  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
      0.065   13.5   0.0       0.13   12.5   0.0    1.4  1  MSV199        MSV199 domain


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.0   2.6e-44   2.4e-40       2     290 ..      57     313 ..      56     316 .. 0.95

  Alignments for each domain:
  == domain 1  score: 138.6 bits;  conditional E-value: 2.6e-44
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLg 98 
                   +glGtw  +      + e+ +++ +a++aG++++DtA +Y   ++e+++G+ l++s+++r e+ +++K+       + ++++e+++ ++++sl+ Lg
    KKY22670.1  57 IGLGTWLSK------PGEVTDAVGAAIDAGYRHIDTAMIY---RNEKEVGKGLEQSGVPRNEIWVTSKL------FNNDHHPEDVEPAIRKSLSDLG 138
                   899999555......6799*********************...**************************......********************** PP

                   -S-EEEEEE-S--TTS-........HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEE CS
  Aldo_ket_red  99 tdyvDllllHrpdpslp.......sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvplia 188
                    +y+Dl+l+H+p    +       s+ ++++a+e+lv +G+ ++iG+Snf+   +e +++++ + ++a + e +++  l+++  ++    +g+++ia
    KKY22670.1 139 IEYLDLYLMHWPVALKDgklddtvSYVDTWKAMEQLVYKGLTKNIGISNFAQHEVEDILSHATIWPAAHEFETHPY--LQQQDFVDWNIRQGIQVIA 233
                   *************99999**********************************************************..********99999****** PP

                   BSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHH CS
  Aldo_ket_red 189 ysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseee 285
                   ysp+g   l   y+s  +                    + +e + +la e++ ++ q  l++ +  +++++vip++  ++++edn+++ e+++++++
    KKY22670.1 234 YSPFG--NLNPIYDSGIPSI------------------LEDEFWIDLADEKNATVPQTILAWGM--QRGTVVIPKSVHAKRIEDNFKSKEIRFTDDD 308
                   ****9..5776666666654..................8999999*******************..9****************************** PP

                   HHHHH CS
  Aldo_ket_red 286 vaeld 290
                   +++++
    KKY22670.1 309 LKKVK 313
                   99875 PP

>> MSV199  MSV199 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.4e-05      0.13      16      85 ..     251     319 ..     243     328 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
      MSV199  16 lliswFwqplvdkkdvlitneiLeflgyeGeykkqkkkfkklLkrnnieykelkykdeeielypslkeei 85 
                 +l + Fw  l d+k+ ++ ++iL +    G+    k    k ++  n + ke++ +d+++++ +  ++e+
  KKY22670.1 251 ILEDEFWIDLADEKNATVPQTILAWGMQRGTVVIPKSVHAKRIE-DNFKSKEIRFTDDDLKKVKGNNKEL 319
                 78999*************************76655554444443.3455555555566555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2305.95
//
Query:       KKY22671.1  [L=580]
Description: putative sap domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-07   28.5   0.4      2e-06   27.4   0.4    1.6  1  SAP        SAP domain
  ------ inclusion threshold ------
        4.3    7.7  12.1       0.04   14.2   1.9    2.6  3  RSB_motif  RNSP1-SAP18 binding (RSB) motif


Domain annotation for each model (and alignments):
>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.4   2.2e-10     2e-06       1      33 [.       4      38 ..       4      40 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 2.2e-10
                HTT--HHHHHHHHHHTT--TTS-..HHHHHHHHHH CS
         SAP  1 lskltVaeLKeeLkkrGLptsGk..KaeLieRLke 33
                +sk++V eLK+eLk+rG p +G+  K++ i+ L+e
  KKY22671.1  4 YSKFKVLELKDELKARGVPLTGLklKQQFIDKLVE 38
                8**********************888888888877 PP

>> RSB_motif  RNSP1-SAP18 binding (RSB) motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       1.8   1.6e+04      30      30 ..      85      85 ..      66     101 .. 0.46
   2 ?   -0.6   0.4      0.17   1.6e+03      43      67 ..     193     218 ..     162     227 .. 0.53
   3 ?   14.2   1.9   4.4e-06      0.04      52      97 ..     461     507 ..     440     511 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.8
   RSB_motif 30 e 30
                +
  KKY22671.1 85 Q 85
                1 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.17
   RSB_motif  43 kekrreskaskekkkeeepp.akllD 67 
                 ++kr++++ +  +  ee ++ ak+lD
  KKY22671.1 193 NKKRKRRSITPPPVSEEVSKkAKALD 218
                 22222222223334444443467766 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 4.4e-06
   RSB_motif  52 skekkkeeeppakllDdlFrkT.katPciYwlPLteeqiaekeaerk 97 
                 ++++    +  + +lD lF +T k++P++Y+ P++   ++ + ++++
  KKY22671.1 461 KRTPPPPKSTAFSALDTLFPSTqKSKPKLYFKPVSSSIAESRLEAFR 507
                 23334444445889*******9789************9999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3825.48
//
Query:       KKY22672.1  [L=834]
Description: putative elongation factor g [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-42  143.5   0.0    8.8e-42  142.9   0.0    1.4  1  GTP_EFTU     Elongation factor Tu GTP binding domain
      4e-23   81.3   0.1    1.1e-22   80.0   0.0    1.8  2  EFG_II       Elongation Factor G, domain II
    1.9e-19   69.5   0.1    2.8e-10   40.1   0.0    2.5  2  EFG_C        Elongation factor G C-terminus
    9.4e-07   29.1   0.0    2.3e-06   27.9   0.0    1.7  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    9.7e-07   28.6   0.0     0.0015   18.3   0.0    2.5  2  EFG_IV       Elongation factor G, domain IV
    0.00088   19.1   0.0     0.0019   18.0   0.0    1.5  1  RF3_C        Class II release factor RF3, C-terminal domain


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.9   0.0   2.9e-45   8.8e-42      23     193 ..       1     295 [.       1     296 [. 0.92

  Alignments for each domain:
  == domain 1  score: 142.9 bits;  conditional E-value: 2.9e-45
                 HHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE.......................TTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEE CS
    GTP_EFTU  23 LlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle.......................ketkkylinliDtPGHvdFskevirglrvlDgav 98 
                 +ly++g +++ g+++e+++v+D+l++Er+rgiTi+saai++e                       k+++++++nliDtPGH+dF+ ev r+lr+lDgav
  KKY22672.1   1 MLYYSGHTRRLGNVDEGSTVTDFLPAERARGITIQSAAITFEwpprspdtgtneierqaeargllKSSASHTVNLIDTPGHADFTFEVRRSLRILDGAV 99 
                 68999999*******99*********************************************9988********************************* PP

                 EEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH............................................ CS
    GTP_EFTU  99 lvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk............................................ 153
                  v+d v Gve+qte+v+ +a + ++p+i f+NK+Dr +a + ++v+e+ ++l                                               
  KKY22672.1 100 CVLDGVAGVEAQTEQVWSQAGEWKIPRIAFVNKLDRDGAAFARTVKEIGTRLGGWpaicqipwweggkgqftgvadvismrglhydpqgdgktikavdf 198
                 ****************************************************666******************************************** PP

                 ........................................................HHHHHHHHHTTT...........TTEEEEEEBTTTTBTHHHHH CS
    GTP_EFTU 154 ........................................................eeklekygekge...........kevpvvfgSalkgegvktll 185
                                                                                                + +pv+ g+++++ g+++ll
  KKY22672.1 199 atlqtmeptlaaelqkarfalvellsghdesmietflehnedhfaiseteiidsirR----------CllsqsnlqgnqDVIPVFAGASFRNIGIQPLL 287
                 *************************99997777776666666666666666555551..........04444455555589****************** PP

                 HHHHHHSH CS
    GTP_EFTU 186 ealvellp 193
                 +a+v+llp
  KKY22672.1 288 DAVVNLLP 295
                 *****998 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   3.5e-26   1.1e-22       1      74 [.     453     526 ..     453     527 .. 0.98
   2 ?   -3.4   0.0       3.7   1.1e+04       3      14 ..     695     706 ..     695     714 .. 0.77

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 3.5e-26
      EFG_II   1 fPePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkreykvevelg 74 
                 +P+Pv+++++e++s +de+ +++a a ll+EDp+l++++d++T++t+lsGmGelHlei+ +rl ++ k+++++g
  KKY22672.1 453 VPPPVFFASLEANSLKDEKAVKDAVAILLREDPSLQITQDDDTGQTLLSGMGELHLEIAGDRLIKDLKANAQMG 526
                 7*********************************************************************9997 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.7
      EFG_II   3 ePvislaiepks 14 
                 ePv+s++i+  +
  KKY22672.1 695 EPVMSVTISVDE 706
                 799999998754 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.3e-09   3.9e-06       1      39 [.     692     731 ..     692     737 .. 0.90
   2 !   40.1   0.0   9.4e-14   2.8e-10      34      86 ..     772     824 ..     753     827 .. 0.90

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.3e-09
                 EEEEEEEEEEEEEECCCCCCHHHHHHH.CT-EEEEEEEE. CS
       EFG_C   1 vllEPivkveievpeeyvgkvisdlss.rrGeiedmeqda 39 
                 vl+EP+++v+i+v+e+ +g+vi d+ss r G+i++ + d+
  KKY22672.1 692 VLMEPVMSVTISVDESSLGTVIHDISSsRGGHIISLDDDD 731
                 59*************************7888**9999884 PP

  == domain 2  score: 40.1 bits;  conditional E-value: 9.4e-14
                 EEEEE.TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHHH CS
       EFG_C  34 dmeqdasgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdkl 86 
                 +m++d +  ++i+a++Pl+e++g+ + Lrs+T+G+g+f m+ +++e++  +  
  KKY22672.1 772 SMSSDHQRPKTIKAKVPLKEMVGYLKHLRSMTQGRGTFVMSVDRFEKMSAQRE 824
                 56667777899************************************998865 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   7.7e-10   2.3e-06       1      73 [.     363     429 ..     363     430 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 7.7e-10
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  G ++++rvysGt+ ++  +++        +  +r   l+++ + e  av+   aG+i  ++gl++a ++Gdtl
   KKY22672.1 363 GPLVYVRVYSGTITRNALLYN--TNL---HLSERPPTLLRMYASESVAVNSLSAGQIGVLVGLKHA-RTGDTL 429
                  5689*****************..666...3459********************************8.*****9 PP

>> EFG_IV  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00099       2.9       3      41 ..     530     568 ..     528     582 .. 0.91
   2 !   18.3   0.0   5.1e-07    0.0015      61     121 .]     623     686 ..     618     686 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00099
                 CESCEE.SS-CCHCCCCCCCHTSSSHCCCCCEEEECCTT CS
      EFG_IV   3 VayrEtirkpvkereeklkkqsggdgqyakvileiePle 41 
                 + yrEti+  ++++ +++  ++ g++  a +  +ieP  
  KKY22672.1 530 IGYRETITGSSEAVTKIFDSEASGKKGKAGCTATIEPYG 568
                 78***********************************64 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 5.1e-07
                 CCHHHHCCCCCCTTS-TTTS--EESEEEEEE.EEE--T..TTC-HHHHHHHHCHHHHHHHHCC- CS
      EFG_IV  61 yieavekGfqealkeGplagepvtdvkvtLl.dgslhe..vdsseaafkpaarralkeallkAs 121
                 ++ a  +G   al++Gp  ++p+++++vtL+ d   h    d++++ + +aar a  +al++As
  KKY22672.1 623 IHTAFTNGALAALARGPKYRYPMRNIHVTLTfDSPAHLfgTDTTPSSLTSAARLATIAALKQAS 686
                 66778889999*******************7355566688*********************995 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   6.3e-07    0.0019       8      95 ..     455     542 ..     449     558 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 6.3e-07
                 --SEEEEEEESSGGGHHHHHHHHHHHHHCT.SSEEEEET.TSS-EEEEESSTHHHHHHHHHHHHHH---EEEEE-S--EEEEEE-SSH. CS
       RF3_C   8 aPElfarvrlkdplkrkqlrkgleqLaeEG.avqvfkeeeageelilgaVGqLQfeVveeRlknEYgvevrleslpyslarwvesedek 95 
                 +P +fa+++++    +k  + ++  L  E    q+ +++ ++ +++l+ +G+L +e+  +Rl +  ++++++ ++++ +   ++ ++e+
  KKY22672.1 455 PPVFFASLEANSLKDEKAVKDAVAILLREDpSLQITQDD-DTGQTLLSGMGELHLEIAGDRLIKDLKANAQMGRIEIGYRETITGSSEA 542
                 578899999999999*********998887255666555.8999*********************************999999887663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (834 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 5627.25
//
Query:       KKY22673.1  [L=534]
Description: putative vacuolar protein sorting-associated protein vps17 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-12   47.4   5.5    3.1e-12   46.6   5.5    1.3  1  Vps5             Vps5 C terminal like
      2e-07   31.0   0.0    4.1e-07   30.0   0.0    1.5  1  PX               PX domain
  ------ inclusion threshold ------
       0.16   12.6   1.8        1.7    9.3   0.2    2.6  2  Pyridox_oxase_2  Pyridoxamine 5'-phosphate oxidase
       0.28   12.0   4.5       0.13   13.1   1.0    2.2  2  DMAP_binding     DMAP1-binding Domain
          7    7.0   8.5       0.37   11.1   0.8    2.5  3  DUF641           Plant protein of unknown function (DUF641)
        8.6    6.4   8.7       0.41   10.7   2.8    1.7  2  NST1             Salt tolerance down-regulator


Domain annotation for each model (and alignments):
>> Vps5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   5.5     1e-15   3.1e-12      47     225 ..     228     406 ..     225     415 .. 0.97

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 1e-15
        Vps5  47 iellvsqrkelasataelakslesLaslelskslsralsqlaeveerikellerqaeqdvltLgetideylrligsvksvfeqRvklwqkwqsaeqels 145
                 +e +v+ r+ l  a ++l+  l++L   e +++ls+a+ +l  + ++  ++++ q  ++  tLg  +  y      vk+ +++R  l ++  +a+q  +
  KKY22673.1 228 LEKMVKARRALGLAENDLGVKLAQLHVQETHPGLSNAYRKLGRIIQTSGDYHAAQGTAEATTLGDQLAYYASDAFIVKETLTNRHILLREFLQAQQAAR 326
                 7899*********************************************************************************************** PP

        Vps5 146 kkkeqleKlekaaksqqdklqqlkkeveelerkvqeaekeFeeisetikkElerFetervedfknvvekyLesaiesqke 225
                  k +++++l+ ++  +++k++++ ++++e+ +  + ++ +  ++++++  E  r+ +  ++ +k+++ +y   +ie+++ 
  KKY22673.1 327 SKEAAANRLKVSTSVRREKVDEAIQQLDEALSHENYLKGKTARVTSNLLLEKRRWFQRTADSLKTSLREYVIRQIEAERR 406
                 ****************************************************************************9876 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   1.4e-10   4.1e-07      28     112 ..      93     172 ..      64     173 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.4e-10
                 ETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHHS CS
          PX  28 lktgakewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrnsevlteFLev 112
                 +++    + v+R + +F++L ++L +  p+  +P  P++ +     + ++e  ++ + gL+++L+ ++++ +l++++++  F e+
  KKY22673.1  93 TTQ---FRDVRRTHGEFVKLAEHLISSNPEALVPAVPPALTSAG--AGTDEDEARVKGGLQRWLNIVCSNDVLMRDDEMVFFVES 172
                 333...489*******************************9987..89999999999********************99999887 PP

>> Pyridox_oxase_2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.13   3.9e+02      32      47 ..      86     101 ..      71     120 .. 0.85
   2 ?    9.3   0.2   0.00056       1.7      37      75 ..     310     355 ..     303     388 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.13
                      TS-EEEEEEE---B-T CS
  Pyridox_oxase_2  32 egkPrvRtvvfRgfle 47 
                      ++ Pr Rt  fR+   
       KKY22673.1  86 TNLPRFRTTQFRDVRR 101
                      566*********9765 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00056
                      EEEEE---B-TT.........SS-.EEEEEETTSHHHHHHH.H.-- CS
  Pyridox_oxase_2  37 vRtvvfRgfleekke......esdvltfttDvrseKvkqless.na 75 
                      +R + +R+fl+ ++         + l+++t vr eKv++  ++ ++
       KKY22673.1 310 NRHILLREFLQAQQAarskeaAANRLKVSTSVRREKVDEAIQQlDE 355
                      899********98746899997777************997753233 PP

>> DMAP_binding  DMAP1-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       2.3   6.8e+03      49      65 ..      47      66 ..      22      91 .. 0.51
   2 ?   13.1   1.0   4.4e-05      0.13      28      89 ..     305     368 ..     299     384 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.3
  DMAP_binding 49 e.nqa.ap.esklsaeakqq 65
                  +  qa ++  + ++ + + +
    KKY22673.1 47 QaSQAaRTpRTVPQYKLQAK 66
                  23233333244444444444 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.4e-05
  DMAP_binding  28 KgyekkklkLLreFlpnslkae.nqaap.esklsaeakqqlasletklrdeelssevytekvqa 89 
                   K++ + +  LLreFl  ++ a+ ++aa+   k s+ +++++ +   +  de ls+e y++  +a
    KKY22673.1 305 KETLTNRHILLREFLQAQQAARsKEAAAnRLKVSTSVRREKVDEAIQQLDEALSHENYLKGKTA 368
                   89999**********655555555556669999********99999999*******99876444 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2         2   5.9e+03      78     104 ..      30      56 ..      19      75 .. 0.44
   2 ?   11.1   0.8   0.00012      0.37      71     126 ..     309     364 ..     285     366 .. 0.83
   3 ?   -0.3   0.1      0.41   1.2e+03      57      94 ..     378     415 ..     372     420 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2
      DUF641  78 aeiqeqrsllktyeitvkkleaelkak 104
                 a+ +++++ + + +++ ++ +a  + +
  KKY22673.1  30 AQQHQEQRHISPGQVRYQASQAARTPR 56 
                 333333333334444333333333333 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00012
      DUF641  71 aeeseleaeiqeqrsllktyeitvkkleaelkakdseieeLkekLeeaeksnkkle 126
                 ++++ l +e  + +++ ++ e+++++l+  ++ ++++++e  ++L+ea ++++ l+
  KKY22673.1 309 TNRHILLREFLQAQQAARSKEAAANRLKVSTSVRREKVDEAIQQLDEALSHENYLK 364
                 5566777888889***********************************99988765 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.41
      DUF641  57 krlyrkkqkkkaseaeeseleaeiqeqrsllktyeitv 94 
                 kr+++++  ++ ++  ++ + ++i+ +r+ l+t+e + 
  KKY22673.1 378 KRRWFQRTADSLKTSLREYVIRQIEAERRELATLESVR 415
                 55555555555555788899999999999999999875 PP

>> NST1  Salt tolerance down-regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3       2.4   7.3e+03      12      23 ..      29      40 ..      23      64 .. 0.51
   2 ?   10.7   2.8   0.00014      0.41      50     129 ..     333     412 ..     307     416 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.4
        NST1 12 qqqqqqdknevd 23
                q qq+q++++++
  KKY22673.1 29 QAQQHQEQRHIS 40
                333333333333 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00014
        NST1  50 qneesstslstsksvaittssarsvknnppsvssaalrsakkvskdrsiwntssqE.ereklkeFWlsLgEeERReLvkvE 129
                 +  + sts+ ++k   + ++  ++++ +++ ++ ++ r ++++  ++  w + + +  +  l+e+ +   E ERReL  +E
  KKY22673.1 333 NRLKVSTSVRREKVDEAIQQLDEALS-HENYLKGKTARVTSNLLLEKRRWFQRTADsLKTSLREYVIRQIEAERRELATLE 412
                 22344555555554455556666666.4455555666777777777778988888879*******************9888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1125  (0.0627475); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.51
# Mc/sec: 3166.61
//
Query:       KKY22674.1  [L=614]
Description: hypothetical protein UCRPC4_g03176 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 3862.75
//
Query:       KKY22675.1  [L=490]
Description: putative ccr4-not core complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-21   75.8   0.0      2e-10   40.3   0.0    2.3  2  CAF1      CAF1 family ribonuclease


Domain annotation for each model (and alignments):
>> CAF1  CAF1 family ribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   1.1e-14     2e-10       1     125 [.     129     259 ..     129     261 .. 0.79
   2 !   33.1   0.0   1.8e-12   3.1e-08     211     318 ..     284     387 ..     277     388 .. 0.72

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.1e-14
                 E-GGGHHHHHHHHHHHHHH-SEEEEEEEES-SS-----------HHHHHHHHHHHTTTB-EEEEEEEEEEEETTT.TE...........EEEEEEEEEB CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.........xxxxxxxxxxx RF
        CAF1   1 VtrsNfkellpeilkaikeasFvAiDlEftGlsegerkesladsleerYeklkqaaesfsilqlGlscfsedkek.kek.........eykvqpynfyl 89 
                 V ++N+++ ++ +++ ++e  ++++D+Ef G+  ++   s   +++ +Y++l+ ++   +++qlG+++fs++ e+   +         ++++ p +   
  KKY22675.1 129 VWKHNIAQEMEALRNLVDEYPYISMDTEFPGI-VARPIGSFTTKADYHYQTLRCNVDLLKMIQLGITLFSVNGETlP-AhdgslpyhqQFTAAPCTWQF 225
                 7899****************************.45556677777889**********************88888844.358888666644444433322 PP

                 ----S...S---EEEEEHHHHHHHHHTT--HHHHHTT-B CS
                 xxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CAF1  90 fpkee...dldrefsvspsslqFLakngfdfnkliseGi 125
                     +   +ld+++  +  s + L+k g+df +  ++Gi
  KKY22675.1 226 ----NfrfSLDSDMYAQE-STTMLQKAGIDFKQHEKNGI 259
                 ....13336667766665.5679**********999998 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 1.8e-12
                 ESSTHHHHHHHHHHH.T----SSHHHHHHHHHHH-SSEEEHHHHHT.STTTTTT-S--SHHHHHHHTTSTTS--.......--EEE-TTS--------- CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CAF1 211 gHNgllDllflyqtf.yaeLPesleeFkaklselFPgiiDtKylak.neelearleassLeelfeklkkenskskdassseekkesekkkaaseesaHe 307
                 +H g +D+ +l++ + +++LP++  eF + l+ +FP+++D K+l k     ++ +++++L +  +++ ++ ++++    ++  ++ +    +  + aH+
  KKY22675.1 284 FHSG-YDFGYLMKIMiCTPLPDDETEFHKLLTIFFPKLLDIKFLLKfAGRHQSINNDQPLTTEAKQILEHLGTKSG--LADIAEALHV---KRIGTAHQ 376
                 4555.6*******994566**************************8844445566777888877777666554422..1111121111...23456*** PP

                 HHHHHHHHHHH CS
                 xxxxxxxxxxx RF
        CAF1 308 AGyDafmTGlv 318
                 AG D+++TG +
  KKY22675.1 377 AGSDSLVTGEI 387
                 *********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.51
# Mc/sec: 2915.56
//
Query:       KKY22676.1  [L=520]
Description: putative 60s ribosome biogenesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-15   57.7   4.8        0.2   12.6   0.0    7.9  7  WD40         WD domain, G-beta repeat
      0.003   17.8   0.0        1.2    9.5   0.0    3.4  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
        0.3   11.7   6.5        1.4    9.6   6.5    2.2  1  Caskin1-CID  Caskin1 CASK-interaction domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00023       1.4       8      38 .]      61      93 ..      57      93 .. 0.82
   2 !   12.6   0.0   3.3e-05       0.2       3      37 ..     121     157 ..     119     158 .. 0.88
   3 ?    3.7   0.2     0.021   1.3e+02      17      38 .]     235     256 ..     176     256 .. 0.84
   4 !    6.2   0.0    0.0034        21      13      36 ..     292     315 ..     278     316 .. 0.90
   5 !    8.1   0.0   0.00085       5.1       7      36 ..     370     401 ..     364     403 .. 0.75
   6 !    4.8   0.0    0.0097        58      21      38 .]     441     460 ..     411     460 .. 0.70
   7 !    5.8   0.0    0.0046        27       4      38 .]     473     515 ..     471     515 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00023
                ESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40  8 tGH.ssvtslafspdgawla.sGsdDgtvriWd 38
                + H +s+ ++a +p  + ++ +G+ D   +iWd
  KKY22676.1 61 DVHtDSIFCIAQHPTEPAIIlTGGGDDVAYIWD 93
                679778*****88888886449977*******9 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.3e-05
                 EEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtsla.fspdgawlasGsdDgtvriW 37 
                 ++ +l+GH +sv+++  + p g + ++++ Dg +r W
  KKY22676.1 121 PISKLDGHtDSVNAVTfTLPKGEYALTAGLDGRLRAW 157
                 67899***888****999999999888888*****99 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.021
                 EEETTSSEEEEEETTSEEEEEE CS
        WD40  17 afspdgawlasGsdDgtvriWd 38 
                 ++ pdg++la+ s+D + +++d
  KKY22676.1 235 SWTPDGNLLATISEDASFYVYD 256
                 399*****98768899988887 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0034
                 EEEEEEETTSSEEEEEETTSEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvri 36 
                  +s+a  p+ga+ a G+  g++r+
  KKY22676.1 292 LYSIAIAPSGAFAAVGGAGGHIRV 315
                 57999********99*99****98 PP

  == domain 5  score: 8.1 bits;  conditional E-value: 0.00085
                 EESS.SSEEEEE.EETTSSEEEEEETTSEEEE CS
        WD40   7 ltGH.ssvtsla.fspdgawlasGsdDgtvri 36 
                 l  + +sv  l+  sp +++la+Gs Dg++ +
  KKY22676.1 370 LQVQsDSVETLSfASPPSTLLAAGSVDGSIVL 401
                 5555445777777788899999*******976 PP

  == domain 6  score: 4.8 bits;  conditional E-value: 0.0097
                 TSSE..EEEEETTSEEEEEE CS
        WD40  21 dgaw..lasGsdDgtvriWd 38 
                 ++a   l+s+++Dg +r Wd
  KKY22676.1 441 SNAVhiLTSAGYDGVLRRWD 460
                 444432667788*******8 PP

  == domain 7  score: 5.8 bits;  conditional E-value: 0.0046
                 EEEEESS.SS.....EEEEE..EETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ss.....vtsla..fspdgawlasGsdDgtvriWd 38 
                 l++++GH ++     + ++    + +g+ +++++dDg   ++d
  KKY22676.1 473 LKEWRGHrGDgegggIQGFVqaPNANGDRIITAGDDGVALVFD 515
                 56788998556888887666669999999**9999**988876 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00021       1.2       9      68 ..     195     258 ..     187     281 .. 0.77
   2 !    4.3   0.0    0.0081        48      46      69 ..     236     259 ..     235     320 .. 0.66
   3 ?    3.5   0.0     0.015        89      37      73 ..     373     410 ..     362     430 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00021
  ANAPC4_WD40   9 LiAlatedgellvfRlng.....qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldae 68 
                   iAl+ +dg+++v+ ++       ++ ++    + ++ ++ +W pdg+lLa   +d +  ++d  
   KKY22676.1 195 VIALGANDGSVWVYQVSSdpsnhLEILQA-YYLHTESSTAGSWTPDGNLLATISEDASFYVYDPF 258
                  799***********998856554456665.456667778889***********999998888765 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0081
  ANAPC4_WD40  46 WkpdgklLavaysdgevrlldaes 69 
                  W pdg+lLa   +d +  ++d   
   KKY22676.1 236 WTPDGNLLATISEDASFYVYDPFG 259
                  777777777777776666665444 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.015
  ANAPC4_WD40  37 edsevrsLaW.kpdgklLavaysdgevrlldaesgkvv 73 
                  ++ +v+ L++ +p  +lLa +  dg++ lld  +   v
   KKY22676.1 373 QSDSVETLSFaSPPSTLLAAGSVDGSIVLLDHVHRFAV 410
                  55678888884477899**********99986554433 PP

>> Caskin1-CID  Caskin1 CASK-interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   6.5   0.00023       1.4       8      50 ..     340     380 ..     338     383 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00023
  Caskin1-CID   8 KplaggdRSsvgStgsvasaRssgsgqssghaLHagaeGvkll 50 
                  Kp a+g R   gStgs as  s+g   +   +L  +++ v  l
   KKY22676.1 340 KPSAAGGRKQAGSTGSSAS--SAGQAGTILASLQVQSDSVETL 380
                  9***************887..6666555559999999999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 3152.12
//
Query:       KKY22677.1  [L=454]
Description: putative cell surface [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   12.0  14.3         15    5.5   0.1    5.0  5  YpzI       YpzI-like protein


Domain annotation for each model (and alignments):
>> YpzI  YpzI-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1     0.079   1.4e+03      14      20 ..      53      59 ..      50      62 .. 0.83
   2 ?    4.0   0.5    0.0024        43      11      21 ..     112     122 ..     111     126 .. 0.90
   3 ?    5.5   0.1   0.00082        15      11      25 ..     173     187 ..     172     193 .. 0.79
   4 ?    4.4   0.1    0.0017        31      11      21 ..     235     245 ..     234     251 .. 0.90
   5 ?    4.0   0.0    0.0023        41      14      23 ..     302     311 ..     299     328 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.079
        YpzI 14 krvESDR 20
                 rv SDR
  KKY22677.1 53 PRVDSDR 59
                69****9 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0024
        YpzI  11 kaskrvESDRD 21 
                 ka  rv SDRD
  KKY22677.1 112 KADPRVDSDRD 122
                 7889******9 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.00082
        YpzI  11 kaskrvESDRDQsls 25 
                 ka  rv SDRD    
  KKY22677.1 173 KADPRVDSDRDGRAT 187
                 7889*******6555 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.0017
        YpzI  11 kaskrvESDRD 21 
                 ka  rv SDRD
  KKY22677.1 235 KADPRVDSDRD 245
                 7889******9 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.0023
        YpzI  14 krvESDRDQs 23 
                  rv SDRD  
  KKY22677.1 302 PRVDSDRDNR 311
                 69******75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                       85  (0.00474092); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.50
# Mc/sec: 2756.80
//
Query:       KKY22678.1  [L=577]
Description: putative polyribose polymerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-53  181.4   0.0    2.9e-53  180.4   0.0    1.5  1  PARP      Poly(ADP-ribose) polymerase catalytic domain
    1.5e-39  135.2   0.1    2.3e-39  134.6   0.1    1.3  1  PARP_reg  Poly(ADP-ribose) polymerase, regulatory domain
    4.8e-25   87.4   0.2    1.4e-24   85.9   0.2    1.8  2  WGR       WGR domain


Domain annotation for each model (and alignments):
>> PARP  Poly(ADP-ribose) polymerase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.4   0.0   4.8e-57   2.9e-53       1     194 [.     360     575 ..     360     576 .. 0.90

  Alignments for each domain:
  == domain 1  score: 180.4 bits;  conditional E-value: 4.8e-57
                 SHHHHHHHHHHHHTS-TTTTEEEEEEEEEEEEETTHHHHCGCCGG.......SS-EEEEEEEE-GGGHHHHHHH-S--S-TTS-GGGSTTSSSEEEBSS CS
        PARP   1 seeykeiekylkktldsthayklkileifrvqregeaerfqekkk.......lrnrrlLfHGsrltnvasilsqGLriappeapvtGymfGkGiYfAdd 92 
                 s e+ +ie+yl+kt ++ h +++++++ifr++r  e++rf+++          ++rrlL+HGs  tn+ +ilsqGLriappeapv+Gymf +G+Y+A++
  KKY22678.1 360 SREFTQIEEYLRKTAAQAHLINYDVEDIFRIERSAEQDRFEKSVFadfasqgRSDRRLLWHGSPCTNFGGILSQGLRIAPPEAPVSGYMFSRGVYLASM 458
                 789**************************************97658999988888******************************************** PP

                 HHHHHGGG--BSSS-EEEEEEEEEE--S.EEEESS--T.G..CCGGTT-SEEEE-EEEEE.......GG.EEETT..E--S-E..EE-S--SSSEEE-E CS
        PARP  93 askSanYcktsekkgsglllLaeValGd.ikeltkady.l..ekakkgkksvkgkgktep.......esivekdg..vPlgks..satkyesseleyne 176
                 ++kSanYc++ ++ + glllL+e++lG+ + +l++ady +  +++  g+ s++g g+t+p         +++ +g  +P+++    + + +++ l y+e
  KKY22678.1 459 STKSANYCRSFQTGNIGLLLLCEAELGNpMLKLYDADYeAdeKAKAYGFVSTWGVGRTTPkawkdasVVNEQLKGvqMPDTSElpGEIEDDRCALAYDE 557
                 **************************************996555667899**********9998754334455559966555526677777777***** PP

                 EEESSGGGEEEEEEEEEE CS
        PARP 177 yvvydkeqvrlkYLlevk 194
                 y+ yd +q+rl+YLl+v+
  KKY22678.1 558 YICYDISQIRLRYLLRVR 575
                 ***************996 PP

>> PARP_reg  Poly(ADP-ribose) polymerase, regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   0.1   3.9e-43   2.3e-39       1     136 []     202     345 ..     202     345 .. 0.94

  Alignments for each domain:
  == domain 1  score: 134.6 bits;  conditional E-value: 3.9e-43
    PARP_reg   1 skLpkevqeLiklifdvelmkkamkeleiDlkkmPLGkLskeqikkgyevLkelselikkkekae..k..lkeklldlsneFytlIPhdfgrkr.ppvi 94 
                 skLp++vq+L++lif+++++ +am+ +++D++k+PLGkLsk+++k+gy+vLkel el+++++ a+  +  +++ +++lsn++ +lIPh + r + pp+i
  KKY22678.1 202 SKLPSPVQRLMNLIFNKDYFASAMSAMNYDTNKLPLGKLSKKTLKDGYTVLKELAELVRDPTIATsrNmsYHQLVEQLSNRYLSLIPHVIPRGSrPPII 300
                 8************************************************************998865156999*****************988779*** PP

    PARP_reg  95 dteeelkkklellesLsdievaskllkaekeekee...hpldrhY 136
                 +t e++k+++e le+L+d+ +a +++k++ + ++e    +ldr++
  KKY22678.1 301 NTDEAVKREVETLENLTDMRLADQIIKDAGSGTDEeglSQLDRQF 345
                 *****************************9998887888888876 PP

>> WGR  WGR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.2   2.3e-28   1.4e-24       1      78 [.      77     154 ..      77     156 .. 0.98
   2 ?   -2.8   0.0       1.2     7e+03      14      38 ..     488     512 ..     478     516 .. 0.67

  Alignments for each domain:
  == domain 1  score: 85.9 bits;  conditional E-value: 2.3e-28
                 EEEEEEEEETTTTEEEEEEEEE.EE-TTS-EEEEEE-S-TTS----EEEEESSHHHHHHHHHHHHHHHHSS-STTGGG CS
         WGR   1 ydlyleqtdiarnsnkFYkiqlleddlfggyslfvrWGRiGtrGqtklksfdseeeAikefeklfaeKtkkgyeeree 78 
                 yd++l+qt+++ n+nkFY iqll +d+ ++y+ ++rWGR+G+ Gq k+   +s+e+A+ efek+f++K++  + +r++
  KKY22678.1  77 YDATLNQTNASANNNKFYVIQLLVHDSTQTYRAYTRWGRVGEIGQAKVLGDGSLESAKHEFEKKFRDKSGLRWDQRQD 154
                 899**********************************************************************99976 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.2
                 EEEEEEEEE.EE-TTS-EEEEEE-S CS
         WGR  14 snkFYkiqlleddlfggyslfvrWG 38 
                 + k Y      d++ ++y ++ +WG
  KKY22678.1 488 MLKLYDADYEADEKAKAYGFVSTWG 512
                 5556666664556667788888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3804.36
//
Query:       KKY22679.1  [L=476]
Description: putative carbamoyl-phosphate small subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-46  157.5   0.0    2.2e-46  156.8   0.0    1.3  1  CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CP
    1.4e-46  158.6   0.0      2e-46  158.2   0.0    1.2  1  GATase           Glutamine amidotransferase class-I
    1.7e-05   24.7   0.1    0.00066   19.5   0.1    2.5  1  Peptidase_C26    Peptidase C26
  ------ inclusion threshold ------
      0.018   14.9   0.0      0.029   14.2   0.0    1.3  1  DJ-1_PfpI        DJ-1/PfpI family


Domain annotation for each model (and alignments):
>> CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CPSase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.8   0.0   4.9e-50   2.2e-46       2     128 .]      56     192 ..      55     192 .. 0.91

  Alignments for each domain:
  == domain 1  score: 156.8 bits;  conditional E-value: 4.9e-50
  CPSase_sm_chain   2 avLvLedGtvfeGksfg.akeavGEvvfnTgmtGYqeiltDpsYagqilvltypliGnyGvneedves.........ekikvaglvvrelseep 85 
                      a+++++dG vf+Gksfg +++ +GE vf+T+++GY+e+ltDpsY+gqilv+t+pliGnyGv ++  ++          +i+++g+vv++++e++
       KKY22679.1  56 ATFTIRDGPVFSGKSFGaKTNISGEAVFTTSLVGYPESLTDPSYRGQILVFTQPLIGNYGVPSSVRDEngllkyfesPNIQASGVVVADVAEHY 149
                      567899***********66888***************************************544444455666665599*************** PP

  CPSase_sm_chain  86 snwraeesLsewlkeekipgisgvDTRaLtkklrekgamkgvi 128
                      s+w+a esLsew+++e++p+isgvDTRa+++ lre+g+ +++i
       KKY22679.1 150 SHWTAVESLSEWCAREGVPAISGVDTRAIVTYLREQGSSLARI 192
                      **************************************99886 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.2   0.0   4.4e-50     2e-46       2     188 ..     237     412 ..     236     414 .. 0.96

  Alignments for each domain:
  == domain 1  score: 158.2 bits;  conditional E-value: 4.4e-50
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.TTTHHHHHHHHCT.STS-EEEETHHHHHHHHHTTTEEEEEECE CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg.vegkieaikeare.nkiPiLGICLGmQllaiefgrkvvkekek 98 
                 +iD++  v+en++++lv++g++v+ +p+d+++++      ++dg+++s+Gpg+p+ +++++  ++++++ +++Pi+GICLG+Qlla++ g+k++k k +
  KKY22679.1 237 VIDCG--VKENILRSLVSRGASVTAFPYDYPIHKVA---HHFDGVFISNGPGDPThCQETVYHLRKLMDsSQMPIFGICLGHQLLALAAGAKTIKLK-Y 329
                 89***..*************************9995...69***************999999999999989**************************.* PP

                 EEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHHH CS
      GATase  99 ehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnfli 188
                 +++ ++++  d        +++++i++++H+y+v+  ++++++++ ++++ +d++++++i+k++p++++QFHPE++ +p ++++lf+ ++
  KKY22679.1 330 GNRAHNIPALD------LTTGRCHITSQNHGYAVDT-STLSSEWKPYFTNLNDDSNEGMIHKSRPIFSTQFHPEAKGGPLDSSYLFDMYL 412
                 ***********......78889*************8.*************************************************9876 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   1.5e-07   0.00066     100     127 ..     298     325 ..     266     396 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.5e-07
  Peptidase_C26 100 aalergvPilgiCrGlqllnvalGGtly 127
                     + ++++Pi+giC+G+qll+ a G ++ 
     KKY22679.1 298 LMDSSQMPIFGICLGHQLLALAAGAKTI 325
                    455689****************997654 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   6.6e-06     0.029      44     112 ..     253     321 ..     210     328 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.6e-06
                 TS...EEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT-EEEEETTTHHHHHHTTT CS
   DJ-1_PfpI  44 rG...lkvtvdaslddvkaaeyDalvlpGGragperlrenekvvelvkefaekgklvaaICagpqlLaaagv 112
                 rG   + ++ d+ + +v++  +D + +  G   p++ +e   v +l k + +++ +++ IC g qlLa a  
  KKY22679.1 253 RGasvTAFPYDYPIHKVAHH-FDGVFISNGPGDPTHCQE--TVYHLRKLMDSSQMPIFGICLGHQLLALAAG 321
                 44333677889****99988.*********998887775..688888888899**************97654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.54
# Mc/sec: 2638.45
//
Query:       KKY22680.1  [L=115]
Description: hypothetical protein UCRPC4_g03182 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.014   14.4   0.7      0.017   14.2   0.7    1.0  1  7TM_GPCR_Srh  Serpentine type 7TM GPCR chemoreceptor Srh
      0.022   14.1   5.3      0.022   14.1   5.3    1.3  1  CorA          CorA-like Mg2+ transporter protein


Domain annotation for each model (and alignments):
>> 7TM_GPCR_Srh  Serpentine type 7TM GPCR chemoreceptor Srh
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.7   1.9e-06     0.017     181     260 ..      15      96 ..       2     103 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.9e-06
  7TM_GPCR_Srh 181 ldstlllivivllllllliqilffvvlliyyllkskk..kslSkkTrklqkkflialiiQvaipllviliPliyllfsilfg 260
                   ++++++++ i+++++l+++  +f+ +l+   +++  +  ++ S +      k  + l++ ++ipl+v+ + l+y +f +l +
    KKY22680.1  15 TKKETVVMRIITVVTLIFLPGTFISTLMSTDIVSFGTndSTSSGQKHGTFSKAAFELYLKITIPLMVCTFILAYGAFKWLSS 96 
                   34446777788888888888888777777777766554477788888888888889*****************999987765 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   5.3   2.4e-06     0.022     232     258 ..      20      46 ..       2      93 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-06
        CorA 232 rvmkvLTvltaiflPlTlitGiyGmNf 258
                  vm+++Tv+t iflP T+i++++  ++
  KKY22680.1  20 VVMRIITVVTLIFLPGTFISTLMSTDI 46 
                 59******************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       919  (0.0512577); expected 358.6 (0.02)
Passed bias filter:                      606  (0.0338); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 720.30
//
Query:       KKY22681.1  [L=565]
Description: putative serine threonine protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-24   84.9   0.0      1e-23   84.0   0.0    1.4  1  Pkinase      Protein kinase domain
    1.4e-09   37.6   0.0    7.5e-09   35.2   0.0    2.1  1  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.082   12.6   0.0       0.17   11.5   0.0    1.4  1  DpnII-MboI   REase_DpnII-MboI


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.0   1.7e-27     1e-23      46     256 ..      14     280 ..       1     288 [. 0.74

  Alignments for each domain:
  == domain 1  score: 84.0 bits;  conditional E-value: 1.7e-27
                 HHHHHHHHHHS.CTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHHHHSS.--HHHHHHH...HHHHHHHHHHHHHTT..........EE-SS- CS
     Pkinase  46 lrEikilkklk.hpnivrlyevfee.....kdelylvleyveggeladllerkgs.lseeeakki...akqilegleylHskg..........iiHrDl 124
                  +E+  ++++  ++ +v + ++f++      +++ ++ley++gg+l+d+ +r+++  s+e++ k+   +  i ++l+ +H+ +            H D+
  KKY22681.1  14 DKEVDAFQRVGqCDTLVAFHGSFSQqllygGQTFNILLEYADGGTLEDFFQRDRQpTSPEDIIKFwekLLDITKALHAIHQVEprregpeifhGWHQDV 112
                 4899999999999***********99999999*******************544446666666660224467799999999878889999555568*** PP

                 SGGGEEEETTTE......EEE-SGTTSEESSSSCS....BCTTTSCGGGS-HHHH........TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHH CS
     Pkinase 125 KpeNiLidekge......lKitDFGlakelesssk....ltsfvgtseYlAPEvl........keneyskkvDvWslGvilyelltgkppfsgekgkek 205
                 Kp+NiL+ ++g+      +K++D+Gl+   es        ++  gt+eY APE+          + ++++ +D+WslG+++ e +  + +     g e+
  KKY22681.1 113 KPKNILVFSQGDhifdskFKLADLGLSHFRESMDGrniwDKDAQGTREYGAPELYrgneyletANLQVKQGADMWSLGCVFSEAVVWSVIGL--LGLEE 209
                 ********8887888999*********999887778899999*************55444433334456779***********987776644..23333 PP

                 HHHHHHT.HHHHHHHCT.....SHH...HHHTTS.....................-HHHHHHHHHHT-SSGCCSTTHH CS
     Pkinase 206 vekeldq.lekilkilg.....etkeklpeasei.....................seeakdllkkllkkdpkkRltae 256
                 +++  +   e+i +  +     +   + +    +                      ee+++l+k+ll+k p  R+ta+
  KKY22681.1 210 YRQARRAeSEQIPDFKDpgcfhD---EQQ----VlkcvrdthervkeqirkgdfaAEEVLRLIKELLEKSPDARPTAT 280
                 33333321333433333332221...111....1333455556666668999999*********************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   1.3e-12   7.5e-09      43     206 ..       8     226 ..       1     286 [. 0.69

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.3e-12
                  HHHHHHHHHHHHHHTS.-BTTB--EEEEEE.....SSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHH...HHHHHHHHHHHHHTT........ CS
  Pkinase_Tyr  43 eekeelleeakimkkl.khpnivkllgvct.....keepllivteyvkgGdLlkfLrkkekekltlkdllsf...alqvAkGmeyLeskk........ 123
                  + ++   +e++ ++++ + + +v+++g  +      +++  i++ey++gG+L++f +++ +++++ +d+++f    l++ k+++ +++ +        
   KKY22681.1   8 DARKYHDKEVDAFQRVgQCDTLVAFHGSFSqqllyGGQTFNILLEYADGGTLEDFFQRD-RQPTSPEDIIKFwekLLDITKALHAIHQVEprregpei 104
                  44555667999999999999*******99966665567799*****************9.77777777777633335667777766665433334432 PP

                  ..EEEST-SGGGEEEEE......TTEEEE-STTTHEETTT.SSEEEETTSSTSGGGGS-HHHHHHSE........EEHHHHHHHHHHHHHHHHTTSSG CS
  Pkinase_Tyr 124 ..lvHrdlaarNvLlse......nkvvkisDfGLardiek.ddeyvkkeeaklpvkWmapEslkekk........ftsksDvWsfGvllwEiftlges 204
                      H+d+  +N+L+ +      +++ k++D GL++  e+ d +   +++a+   ++ apE  + ++        +++ +D+Ws G +  E +  +  
   KKY22681.1 105 fhGWHQDVKPKNILVFSqgdhifDSKFKLADLGLSHFRESmDGRNIWDKDAQGTREYGAPELYRGNEyletanlqVKQGADMWSLGCVFSEAVVWSVI 202
                  22679**********99899999999*********98855155568999999***********9999888888888999********99998876655 PP

                  T......................T CS
  Pkinase_Tyr 205 p......................y 206
                                          
   KKY22681.1 203 GllgleeyrqarraeseqipdfkD 226
                  533444444444444444444441 PP

>> DpnII-MboI  REase_DpnII-MboI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.8e-05      0.17      74     142 ..     398     466 ..     395     472 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.8e-05
  DpnII-MboI  74 lkiviEvKytrkskkekklieelaaDialYksdskyktLicfvYdpe.rrienpeklekdlekeegkkdv 142
                 ++ ++E+K++r++ k+++lie l +  ++ ++d ++++ + +++d+  + +++p++l +++++++ k  v
  KKY22681.1 398 MHCMVEMKKIRSK-KTSTLIEGLDKRDERLQNDVDINKCLNIIFDEYmKTMKQPKGLTTAFRSKSPKPMV 466
                 6889*******99.99*********99***9**99999999999986245799********988776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.54
# Mc/sec: 3140.42
//
Query:       KKY22682.1  [L=964]
Description: putative carbonic anhydrase 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-13   51.0   2.0    1.7e-12   47.0   0.0    2.8  3  DUF3435   Protein of unknown function (DUF3435)
    4.1e-12   45.8   0.8    9.1e-12   44.7   0.8    1.6  1  Chromo    Chromo (CHRromatin Organisation MOdifier) domain
  ------ inclusion threshold ------
      0.016   15.3   0.4      0.038   14.1   0.4    1.7  1  Mtf2_C    Polycomb-like MTF2 factor 2


Domain annotation for each model (and alignments):
>> DUF3435  Protein of unknown function (DUF3435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   2.8e-16   1.7e-12     113     297 ..     218     396 ..     187     435 .. 0.84
   2 ?    1.7   0.0     0.016        95     375     397 ..     448     470 ..     442     475 .. 0.85
   3 ?   -0.8   0.2     0.091   5.5e+02     314     347 ..     675     708 ..     628     720 .. 0.74

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 2.8e-16
     DUF3435 113 frdeAFkspsltsaedlyrlkvpkgrqqlpLklkpemldipvFcraereaegvrilkdealtastlnsrlkrlgeiagfeepitpYklRrga..akaln 209
                 +  + F+    ++ edl++++ pk++   ++++k+e+l++p F  ++ +    ri      tas ++ r+ +lg  +g+ +p t++  R g+   k+  
  KKY22682.1 218 LEMKVFRDH--QTIEDLLAIEPPKHARACHVRWKDEILETPFF-ISQSTTRVSRIE-----TASEFSRRIASLGIRTGMPKPPTQHDWRIGSrtNKIPH 308
                 555666664..599*****************************.566666777777.....9999************************9963267777 PP

     DUF3435 210 eSgevseaqrnlilqHassrtFlkhYlsqkvdkdvqavvlglppqealiraassmsrsiDprrPkeLtdeqkasveedpelqelkrkr 297
                 e +  se+ r+   +H +s+tF ++Y++ + ++d q  +lg + +e +  +  + s   +p+ +++L   ++  +e+  e  +l+ + 
  KKY22682.1 309 EDKYYSESARMRQAGHHDSNTFRNYYQPSNSGVDGQGTFLGKERREIISDVFRELSIPYNPNLSQRLPARERYILEHSEEDVSLETET 396
                 8889*****************************************9999999999999999999999888877777776666665555 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.016
     DUF3435 375 ledeqlvpperarlidllltlpt 397
                 +++  +++per rl+++l++++t
  KKY22682.1 448 FDRVRFMMPERDRLARNLFQIAT 470
                 567899**************885 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.091
     DUF3435 314 akgtelyeelekakrelrnerqrlrrelkkkire 347
                 +k++   ee  k++ ++r++r+++r + k++  e
  KKY22682.1 675 RKRKRSREEEDKVEPDVRTSRKQQRSAKKRDFPE 708
                 2223345677788888888888888777776555 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.8   1.5e-15   9.1e-12       1      53 [.     904     955 ..     904     956 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 1.5e-15
                 EEEEEEEEEEEETTEEC..EEEEEEETTSTGGGTEEEEGGGCSSHSHHHHHHHHH CS
      Chromo   1 yeVerIidhrtdkdgle..leYlVKWkglpysentWEpeenlekcfqelideFkk 53 
                 y Ver++ +r++k g+    +YlVKW+g+p+s n W +e+++ ++   l+++F +
  KKY22682.1 904 YLVERLLRRRVRKIGKRkkVQYLVKWEGYPESRNEWVNEADINDD---LVEAFME 955
                 56************99999************************99...9999976 PP

>> Mtf2_C  Polycomb-like MTF2 factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.4   6.4e-06     0.038      29      47 ..     911     932 ..     903     933 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.4e-06
      Mtf2_C  29 AkRvtpnGk...vqYLieWeGa 47 
                  +Rv   Gk   vqYL+ WeG+
  KKY22682.1 911 RRRVRKIGKrkkVQYLVKWEGY 932
                 578888888788*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (964 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.51
# Mc/sec: 5731.29
//
Query:       KKY22683.1  [L=537]
Description: hypothetical protein UCRPC4_g03185 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.014   15.2   0.2      0.036   14.0   0.2    1.6  1  F-box       F-box domain
      0.027   14.4   0.2      0.082   12.8   0.2    1.9  1  F-box-like  F-box-like
       0.43   10.8   2.7       0.72   10.0   1.3    2.0  2  GCN5L1      GCN5-like protein 1 (GCN5L1)


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2     6e-06     0.036       5      28 ..      11      34 ..       8      47 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6e-06
                HS-HHHHHHHHHTS-HHHHHHHCT CS
       F-box  5 rLPsevlrhILerLplsdllalrr 28
                +LP+e+l+ +L+ Lp +d+++l +
  KKY22683.1 11 QLPNEILLIVLRLLPIKDVISLQL 34
                7******************99976 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   1.4e-05     0.082       3      26 ..      11      34 ..       9      38 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.4e-05
  F-box-like  3 rLPdEiLlqIFsyLppsdLlrlal 26
                +LP+EiLl +++ Lp +d ++l l
  KKY22683.1 11 QLPNEILLIVLRLLPIKDVISLQL 34
                7*****************999865 PP

>> GCN5L1  GCN5-like protein 1 (GCN5L1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.44   2.6e+03      52      75 ..     249     272 ..     224     279 .. 0.82
   2 ?   10.0   1.3   0.00012      0.72      42      87 ..     481     526 ..     443     528 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.44
      GCN5L1  52 lekeakalqanvakfakqtdqWla 75 
                 l+  a+ +++++++f+   +q l+
  KKY22683.1 249 LDPRARTFNQHTMRFQSVLKQILS 272
                 777888888888888887777666 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00012
      GCN5L1  42 vaeayanqkklekeakalqanvakfakqtdqWlalvesfnsalkei 87 
                   ++ + q++l ke+++++ +v++++ ++++W +  e++   l e+
  KKY22683.1 481 ALQLCEVQQQLQKETRDYAVTVEHLRSTVAKWFQGLEEVMPILEEL 526
                 5577788***************************999998888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      706  (0.0393775); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 3461.71
//
Query:       KKY22684.1  [L=253]
Description: putative sam dependent [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-10   41.3   0.0    2.3e-10   40.6   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    6.1e-05   23.6   0.0    0.00014   22.5   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
    0.00016   21.9   0.0    0.00021   21.5   0.0    1.2  1  FtsJ             FtsJ-like methyltransferase
    0.00035   20.4   0.1     0.0017   18.2   0.0    2.0  2  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.013   14.9   0.0      0.023   14.2   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
      0.025   14.1   0.0      0.039   13.5   0.0    1.3  1  MTS              Methyltransferase small domain
      0.042   13.2   0.0      0.057   12.8   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.082   12.6   0.0       0.13   12.0   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
       0.13   13.0   0.0       0.35   11.6   0.0    1.8  2  Methyltransf_11  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   1.2e-13   2.3e-10      21     109 ..      87     175 ..      58     192 .. 0.87

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 1.2e-13
  Methyltransf_23  21 raggrvLdiGcGtGillevlren.gf.svtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatll 109
                        ggrvLd+G+GtGi++ +l+e  ++  v+gvDl p++ + +  +++ +++ +d +  +  +  f +I +r++ ++++d+p l+rq ++++
       KKY22684.1  87 TVGGRVLDLGTGTGIWAIELAESdPAsVVIGVDLAPIQPDFV--PPNLEFQIEDIEMQWTWSYDFTFIRARQLGGSIKDWPCLIRQCNQYV 175
                      5678****************9994454566*******99986..8888888888888888889***********************99976 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   6.9e-08   0.00014       1      40 [.      92     131 ..      92     175 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 6.9e-08
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaarer 40 
                      vLdlG+GtG ++++la+  +++ v+gvD+++ + + +  +
       KKY22684.1  92 VLDLGTGTGIWAIELAESDPASVVIGVDLAPIQPDFVPPN 131
                      9****************9779999*****99887766544 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0     1e-07   0.00021      20      77 ..      87     146 ..      64     211 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1e-07
                 -TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCCSSHHH CS
        FtsJ  20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditdpetie 77 
                 + g++v+Dlg ++G w+  l++   ++++v++vDl p++p    p++++   di ++ t  
  KKY22684.1  87 TVGGRVLDLGTGTGIWAIELAESD-PASVVIGVDLAPIQPDfvpPNLEFQIEDIEMQWTWS 146
                 46789******************5.56***********8777789*999999998876655 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   8.4e-07    0.0017       4      37 ..      89     121 ..      86     124 .. 0.89
   2 ?   -0.6   0.0      0.52     1e+03      55      78 ..     131     150 ..     126     199 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 8.4e-07
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDis 37 
                      g rvlDlG+GtG  ++ela e  p + v+G+D  
       KKY22684.1  89 GGRVLDLGTGTGIWAIELA-ESDPASVVIGVDLA 121
                      679****************.8889999*****75 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.52
  Methyltransf_31  55 nveFeqgdiee.leklledekfDli 78 
                      n+eF+++die      +   ++D+ 
       KKY22684.1 131 NLEFQIEDIEMqWT--W---SYDFT 150
                      88999999986333..3...36654 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.1e-05     0.023       5      33 ..      92     120 ..      90     126 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G G + ++lA+ +P   ++G+++
      KKY22684.1  92 VLDLGTGTGIWAIELAESDPASVVIGVDL 120
                     79*************************97 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     2e-05     0.039      31      62 ..      88     119 ..      76     145 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2e-05
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEE CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvd 62 
                   g+vlDlG+G+G+ +++la+  p   v  vd
  KKY22684.1  88 VGGRVLDLGTGTGIWAIELAESDPASVVIGVD 119
                 6789******************9997776666 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.8e-05     0.057     162     195 ..      89     123 ..      70     135 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.8e-05
        PrmA 162 geevlDvGtGSGiLaiaaakLg.akkvvavDiDev 195
                 g +vlD+GtG+Gi ai  a  + a+ v++vD+ ++
  KKY22684.1  89 GGRVLDLGTGTGIWAIELAESDpASVVIGVDLAPI 123
                 568*************9887762566789999875 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.4e-05      0.13      48      90 ..      90     133 ..      73     148 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.4e-05
  Methyltransf_16  48 lsvlELGsGtGlvGlavaellpeakvil.tDleell.ellkknie 90 
                       +vl+LG GtG+  + +ae+  +a+v++  Dl  ++ +++  n+e
       KKY22684.1  90 GRVLDLGTGTGIWAIELAES-DPASVVIgVDLAPIQpDFVPPNLE 133
                      579*****************.555555526777644145555555 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00017      0.35       1      32 [.      93     126 ..      93     174 .. 0.79
   2 ?   -2.0   0.0         3   5.9e+03      75      94 ..     220     239 ..     210     241 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlk 32 
                      Ld+G+GtG+ a +la+    + v+gvDl++ + +
       KKY22684.1  93 LDLGTGTGIWAIELAESDpaSVVIGVDLAPIQPD 126
                      8**************555569*******987654 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3
                      CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11  75 edpekalkeiaRvLkpgGll 94 
                       +++ +l+ei+   k  G+ 
       KKY22684.1 220 LEVQVYLAEIREAAKTHGFH 239
                      57888999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1842.46
//
Query:       KKY22685.1  [L=300]
Description: hypothetical protein UCRPC4_g03187 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:00.57
# Mc/sec: 1572.99
//
Query:       KKY22686.1  [L=339]
Description: putative sexual development protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-23   82.9   0.0    3.7e-23   82.2   0.0    1.3  1  Ferritin_2  Ferritin-like domain


Domain annotation for each model (and alignments):
>> Ferritin_2  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.0   2.1e-27   3.7e-23       5     135 ..      54     185 ..      50     186 .. 0.95

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 2.1e-27
  Ferritin_2   5 iLnfAlnlEyleaafYtaalegaslddkalldaevrevaeeiakheeaHveflkaale..GaaavakptfdfafdpfadeksflalaavlEdvgvsAYl 101
                  L+ Al lE le  f++++l+++++++++++++++++v++++a++e+ Hve l + l   G  +++++++ f    +++ k+fl+la ++  vg+ A +
  KKY22686.1  54 ELQLALFLENLEVSFFNMGLTNFTESNANGYPNDTLQVVKKVAAQEVVHVESLINLLDdyGIPTIPPCNYSF---SVNSTKTFLDLAHMIGSVGIGATI 149
                 59*********************************************************99999********...************************ PP

  Ferritin_2 102 gaaplls..nkelltaaasIlsvEArHaavirtllg 135
                 g  + l+  ++ l+++  sIl+vE+rH+a++r++ g
  KKY22686.1 150 GLTERLAatDPLLVKTLSSILTVESRHDAFFRSVNG 185
                 ****7774466799******************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.54
# Mc/sec: 1881.19
//
Query:       KKY22687.1  [L=301]
Description: hypothetical protein UCRPC4_g03189 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2015.63
//
Query:       KKY22688.1  [L=672]
Description: hypothetical protein UCRPC4_g03191 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.013   15.4   3.1      0.013   15.4   3.1    2.2  2  YfdX            YfdX protein


Domain annotation for each model (and alignments):
>> YfdX  YfdX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   3.1   7.3e-07     0.013      33     106 ..     215     288 ..     193     291 .. 0.80
   2 ?   -2.7   1.4      0.28     5e+03      16      88 ..     616     647 ..     601     658 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.3e-07
                 S-HHHHHCCB-..S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEE CS
        YfdX  33 aaladdpklvk..kapasadalvPvdaevividdladtpekkaaikkanellkkgdtqaArelLkllgseiditta 106
                 aa ++  +l    k++ ++d+  P+d  +i+ d +  +++ k+a  ++++llk+ + q+A++ L++ ++++  t++
  KKY22688.1 215 AAAKQLDSLNDqiKKQNEKDEVEPIDQWIIHYDIF--AEAYKKAKPTVERLLKNPEDQEAQKQLQEQQNDLKETIE 288
                 333444444336677778889**************..8888999999************************99986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.28
                 -HHHHHHHHHHHHHHHTS-HHHHHCCB-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHHHHTT-HH CS
        YfdX  16 dtkeAkkllekAqgkleaaladdpklvkkapasadalvPvdaevividdladtpekkaaikkanellkkgdtq 88 
                      +k+                                         l+++++++    +++++l+++++q
  KKY22688.1 616 VETNQTKM-----------------------------------------LEQLKKQQDLQVQMQQQLQQQQQQ 647
                 33333344.........................................444444444444555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3553  (0.198171); expected 358.6 (0.02)
Passed bias filter:                      830  (0.0462937); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.53
# Mc/sec: 3804.91
//
Query:       KKY22689.1  [L=267]
Description: hypothetical protein UCRPC4_g03192 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0066   16.5   2.0      0.018   15.1   2.0    1.8  1  Cep57_CLD_2  Centrosome localisation domain of PPC89
  ------ inclusion threshold ------
       0.29   11.4   6.2       0.46   10.8   6.2    1.3  1  THOC7        Tho complex subunit 7


Domain annotation for each model (and alignments):
>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   2.0     2e-06     0.018      22      60 ..     210     248 ..     191     261 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2e-06
  Cep57_CLD_2  22 heeelkrLnkERdsalrqLgvAyeelneLkaevealrkE 60 
                    + l+++ +ER   l++L +A +++n+L+aev   + E
   KKY22689.1 210 RRSKLQKVKTERRHLLTKLEIASSTINQLRAEVSQPQTE 248
                  4467788888***********************988777 PP

>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   6.2   5.2e-05      0.46      15     112 ..     160     256 ..     143     260 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.2e-05
       THOC7  15 plkrltkrllklltslaesteeeleqlkedll.ldfaafelsierlqllakanerereryeaekeeieseieavreeieelkaqLeearatranrkeyd 112
                  + +l k++ k++ +  ++++ e+  l+ ++l  ++ + + +i+rl+++++  + + +++++e++++++++e + + i +l+a+ ++ +++   ++ ++
  KKY22689.1 160 HYANLHKQVVKISRD--SASQVEIYCLQMRVLrGKLREKKATIDRLEAVNNLRRSKLQKVKTERRHLLTKLEIASSTINQLRAEVSQPQTEAVAKRGCE 256
                 677777888886655..444555555555544158889999***********************************************99988887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1227  (0.0684366); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 1686.78
//
Query:       KKY22690.1  [L=370]
Description: hypothetical protein UCRPC4_g03193 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.015   15.2   0.3      0.015   15.2   0.3    2.7  3  SKA1           Spindle and kinetochore-associated protein 1
      0.028   14.5   6.0       0.24   11.4   0.5    2.3  2  DUF1664        Protein of unknown function (DUF1664)
      0.039   12.5   0.5      0.062   11.8   0.5    1.4  1  Herpes_UL25    Herpesvirus UL25 family
      0.043   12.3   0.1      0.063   11.8   0.1    1.1  1  Baculo_F       Baculovirus F protein
      0.052   13.1   8.0        1.7    8.2   2.2    2.2  2  Fzo_mitofusin  fzo-like conserved region
      0.081   10.4   6.0       0.11   10.0   6.0    1.0  1  DUF3584        Protein of unknown function (DUF3584)
        0.1   12.6   8.2        1.6    8.8   8.3    2.1  1  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 
        0.5   10.9   4.6        3.4    8.2   2.8    2.6  2  NPV_P10        Nucleopolyhedrovirus P10 protein
       0.53   10.5   4.7        3.7    7.7   0.4    2.3  2  Fib_alpha      Fibrinogen alpha/beta chain family
       0.75    9.9   6.0        4.8    7.3   0.6    3.1  3  YojJ           Bacterial membrane-spanning protein N-terminus
       0.77   10.0  10.9      0.076   13.2   1.1    3.3  4  XhlA           Haemolysin XhlA
       0.92    8.8   5.5        1.5    8.1   0.8    2.0  2  YjcZ           YjcZ-like protein
        1.2    9.4   4.0        1.7    8.8   1.3    2.6  2  DUF5446        Family of unknown function (DUF5446)
          2    9.0   6.0         33    5.1   6.0    2.4  1  DUF16          Protein of unknown function DUF16
        3.5    7.9   8.0         21    5.4   0.2    2.5  2  Seryl_tRNA_N   Seryl-tRNA synthetase N-terminal domain
        3.7    8.1  10.4       0.17   12.4   1.5    3.0  3  DUF2630        Protein of unknown function (DUF2630)


Domain annotation for each model (and alignments):
>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2       3.9   4.4e+03      67     111 ..      41      85 ..      21     104 .. 0.46
   2 ?    3.1   1.6     0.064        72      27      80 ..     168     221 ..     149     228 .. 0.79
   3 ?   15.2   0.3   1.3e-05     0.015      13      99 ..     228     318 ..     221     347 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.9
                 ...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SKA1  67 qeklqhlkenlpshlpkktaassaeeskssspeeeeeteskkeke 111
                 q ++q   + +ps + +++ +  +++ + +++ +eee ++ ++ +
  KKY22690.1  41 QDHVQGSDSATPSPVVRQKGPPGQVDHDIADSAGEEERTERSRST 85 
                 333555555555555444444444444333333333323322222 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.064
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXX CS
        SKA1  27 kieaevsaleellnklkkelqeeeeaikklkkeieaslkqqeklqhlkenlpsh 80 
                  ++++++++++ l + +++l + +++ ++  + +ea+l ++ +l++++  + ++
  KKY22690.1 168 VLGQSMEQIKQELLATETRLCQASKQTEHYLASVEAKLGKDPELKQHLLAIETK 221
                 478999999999999999999999999999999999999999977666666555 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 1.3e-05
                 ...........XX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX CS
        SKA1  13 ainqdpallkedl...skieaevsaleellnklkkelqeeeeaikklkkeieaslkqqeklqhlkenlp.shlpkktaassaeeskssspe 99 
                 +++q+p+l ++ l    k++++ + le+ l +++++l++ + +i+++k  +e s +q   l h++++   + lp+  aas+ +  +++s +
  KKY22690.1 228 KLGQEPELKQHLLaieTKVDQNSERLEQRLTRVETTLDQIAGLINQIKTGVEPSHDQGFGLGHIENHAEaPELPSPSAASQLSGDQTDSIP 318
                 4788999966666333478888899******************************99999*****99863578988888877655555544 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.7     0.014        16      42     103 ..     165     229 ..     154     234 .. 0.68
   2 ?   11.4   0.5   0.00021      0.24      46      91 ..     235     280 ..     231     291 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.014
     DUF1664  42 avesvskqleqvseslaatkrhLssridrvd...kkldeqkeiskeikeevtevredlseigedv 103
                   + +++++eq++++l at  +L +  ++ +   +++++      e+k+++ +++ ++++i+ ++
  KKY22690.1 165 IRDVLGQSMEQIKQELLATETRLCQASKQTEhylASVEAKLGKDPELKQHLLAIETKVNQIEAKL 229
                 55678999999999999999999765444440004555555566677888888888888887665 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00021
     DUF1664  46 vskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevte 91 
                 + ++l  + +++ +  ++L++r+ rv+++ld+ + ++++ik  v+ 
  KKY22690.1 235 LKQHLLAIETKVDQNSERLEQRLTRVETTLDQIAGLINQIKTGVEP 280
                 678899999********************************98875 PP

>> Herpes_UL25  Herpesvirus UL25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   5.6e-05     0.062      25     103 ..     209     289 ..     183     334 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.6e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX....X CS
  Herpes_UL25  25 pereaellreealeasreevevlevkkralraeLdnlaqkavalaeeierrlkevEellekiael.eaaaaaeeaaaar....p 103
                  pe++ +ll  e  +   +++e++  ++  l++ L  ++ k+++++e++e+rl++vE  l +ia l ++ ++  e++  +     
   KKY22690.1 209 PELKQHLLAIETKV---NQIEAKLGQEPELKQHLLAIETKVDQNSERLEQRLTRVETTLDQIAGLiNQIKTGVEPSHDQgfglG 289
                  55555554444444...478999999999***********************************98444444444433344442 PP

>> Baculo_F  Baculovirus F protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   5.6e-05     0.063     173     244 ..     213     283 ..     209     286 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.6e-05
    Baculo_F 173 ksenslneqvkqltdeliklseyveskkqeieeqkedkCeyieaklnllkdqldeieslytkldravddAlk 244
                 ++  +++ +v q++++l +  e+ ++    ie++ +++ e++e++l+ ++++ld+i+ l ++++++v+ +++
  KKY22690.1 213 QHLLAIETKVNQIEAKLGQEPELKQHL-LAIETKVDQNSERLEQRLTRVETTLDQIAGLINQIKTGVEPSHD 283
                 555678999*****************9.9999999********************************98875 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   1.6    0.0023       2.6      92     125 ..     173     206 ..     165     232 .. 0.74
   2 ?    8.2   2.2    0.0015       1.7      85     140 ..     219     276 ..     212     277 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0023
  Fzo_mitofusin  92 shqvqqelsstfarlcqqvdetekeleeeikele 125
                     +q++qel  t  rlcq++++te+ l +  ++l 
     KKY22690.1 173 MEQIKQELLATETRLCQASKQTEHYLASVEAKLG 206
                    579*******************998876555544 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0015
  Fzo_mitofusin  85 sltsancshqvqq..elsstfarlcqqvdetekeleeeikelekeiekleevqkkakl 140
                    +++ ++++ ++ q  el++ +  ++++vd++++ le++++++e+++++++ ++++ k+
     KKY22690.1 219 ETKVNQIEAKLGQepELKQHLLAIETKVDQNSERLEQRLTRVETTLDQIAGLINQIKT 276
                    555666666666655899999*****************************99999885 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   6.0   9.5e-05      0.11     414     537 ..     162     282 ..     124     284 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 9.5e-05
     DUF3584 414 kaaieealealesqlrkqleaqkeelneeekelesrlselklrldsatateEeleqieeadealekaqeelekaeaevealqaeeeqlrkkrdeadeal 512
                  aai+++l +  +q +++l a +++l ++ k+ e+ l++ + +    +  +E+++++ + + ++++ +++l +  + +++l a e++++++++  +++l
  KKY22690.1 162 AAAIRDVLGQSMEQIKQELLATETRLCQASKQTEHYLASVEAK---LGKDPELKQHLLAIETKVNQIEAKLGQEPELKQHLLAIETKVDQNSERLEQRL 257
                 5667777777777777777777777777777777777777654...46789************************************************ PP

     DUF3584 513 qkaerrleqlrqaleeleeqlsPqa 537
                 ++ e  l q +  ++++++ + P  
  KKY22690.1 258 TRVETTLDQIAGLINQIKTGVEPSH 282
                 *****************99988876 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   8.3    0.0014       1.6      25     120 ..     165     276 ..     162     278 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0014
  Baculo_PEP_C  25 irlqnvqilaqlatlldaietqLnalsedlksllaeldt......rldtlltnLtdalnalq......dtlrneLtnlnsil....tnLlssvtNin 105
                   ir  + q + q+++ l a et+L + s++ ++ la++++      +l++ l ++++++n+++       +l+++L ++++++      L   +t ++
    KKY22690.1 165 IRDVLGQSMEQIKQELLATETRLCQASKQTEHYLASVEAklgkdpELKQHLLAIETKVNQIEaklgqePELKQHLLAIETKVdqnsERLEQRLTRVE 261
                   5555555556666666666666666666666666666666666666666666666666666656655544555554444444111134666666666 PP

  Baculo_PEP_C 106 stLnnllqalnnldl 120
                   +tL  +   +n +++
    KKY22690.1 262 TTLDQIAGLINQIKT 276
                   666666666666655 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.4     0.019        21      46      73 ..     210     235 ..     137     237 .. 0.77
   2 ?    8.2   2.8     0.003       3.4      14      66 ..     216     272 ..     209     302 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.019
     NPV_P10  46 aqsaqLaeletkvenIqdiLnpdevPdl 73 
                 ++ + L ++etkv++I+  L   ++P+l
  KKY22690.1 210 ELKQHLLAIETKVNQIEAKLG--QEPEL 235
                 467888999999999999998..56665 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.003
     NPV_P10  14 kavddkVdalqqqvddvqenlpdvtelnekLda....qsaqLaeletkvenIqdiLn 66 
                  a+++kV+ +++++ +  e  + +  +++k+d+    + + L+ +et++++I  + n
  KKY22690.1 216 LAIETKVNQIEAKLGQEPELKQHLLAIETKVDQnserLEQRLTRVETTLDQIAGLIN 272
                 456666666666664433333333444455554111144556677778888887777 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.3     0.066        74      12      73 ..     156     213 ..     147     233 .. 0.69
   2 ?    7.7   0.4    0.0033       3.7      21      68 ..     234     281 ..     232     286 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.066
                 CEEEEE-CCHHHHCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  12 fgslCPtgCglqdlllkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskk 73 
                  g+ CP    ++d+l +  +++k++l   e +l ++s++t   e++  +++ +l ++ + k+
  KKY22690.1 156 VGTRCPAA-AIRDVLGQSMEQIKQELLATETRLCQASKQT---EHYLASVEAKLGKDPELKQ 213
                 68888876.7999999999999999999998888776655...4555555555555555444 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0033
                 HHHHCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  21 glqdlllkyekdvkkdlekleneleeisnstkeaeelvkeikdslrek 68 
                 +l++ ll  e++v+++ e+le++l++++ +  ++  l+++ik+ +++ 
  KKY22690.1 234 ELKQHLLAIETKVDQNSERLEQRLTRVETTLDQIAGLINQIKTGVEPS 281
                 578899999999999999999999999999999999999999887765 PP

>> YojJ  Bacterial membrane-spanning protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.38   4.3e+02       5      28 ..     160     183 ..     157     200 .. 0.77
   2 ?    2.8   0.2      0.11   1.3e+02      13      35 ..     210     232 ..     207     234 .. 0.89
   3 ?    7.3   0.6    0.0043       4.8      13      54 ..     234     275 ..     232     278 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.38
        YojJ   5 cleeelkeklkeeLeqiekeleev 28 
                 c +++++  l + +eqi++el   
  KKY22690.1 160 CPAAAIRDVLGQSMEQIKQELLAT 183
                 566788888888888888887555 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.11
        YojJ  13 klkeeLeqiekeleevlkaldee 35 
                 +lk++L  ie++++++ ++l +e
  KKY22690.1 210 ELKQHLLAIETKVNQIEAKLGQE 232
                 69**************9998765 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0043
        YojJ  13 klkeeLeqiekeleevlkaldeedeClLcelesirekfaele 54 
                 +lk++L  ie+++++  + l++   ++ ++l++i   +++++
  KKY22690.1 234 ELKQHLLAIETKVDQNSERLEQRLTRVETTLDQIAGLINQIK 275
                 69********************************99998876 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         7   7.9e+03      11      24 ..     144     157 ..     140     159 .. 0.73
   2 ?   -1.0   0.1       1.9   2.1e+03       4      43 ..     178     200 ..     169     205 .. 0.52
   3 ?    1.9   0.2      0.22   2.5e+02       1      19 [.     210     228 ..     210     232 .. 0.80
   4 ?   13.2   1.1   6.8e-05     0.076       1      46 [.     234     276 ..     234     278 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7
        XhlA  11 tkldnleervdkle 24 
                 + ld++ +r+ k+ 
  KKY22690.1 144 KPLDDHHQRLVKVG 157
                 56899999988775 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.9
        XhlA   4 erlerietkldnleervdkleekaaeaeekiknleedlkk 43 
                 ++l  +et+                   + +k++e+ l++
  KKY22690.1 178 QELLATETR-----------------LCQASKQTEHYLAS 200
                 444444444.................34445555555555 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.22
        XhlA   1 eikerlerietkldnleer 19 
                 e+k+ l  ietk++ +e +
  KKY22690.1 210 ELKQHLLAIETKVNQIEAK 228
                 5788899999999999875 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 6.8e-05
        XhlA   1 eikerlerietkldnleervdkleekaaeaeekiknleedlkkles 46 
                 e+k+ l  ietk+d  +er   le++ +++e+ ++++   +++++ 
  KKY22690.1 234 ELKQHLLAIETKVDQNSER---LEQRLTRVETTLDQIAGLINQIKT 276
                 5799999***********8...********************9985 PP

>> YjcZ  YjcZ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.4     0.059        66      66     124 ..     146     203 ..     137     214 .. 0.76
   2 ?    8.1   0.8    0.0013       1.5      81     126 ..     220     264 ..     210     277 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.059
        YjcZ  66 ldpghLALttiaqrlallsqtlaekasaapklaqalaalaeefaarverkekaltqrel 124
                 ld  h  L+++  r          +++ +++++q+l a+ +++ + +++ e+ l  +e 
  KKY22690.1 146 LDDHHQRLVKVGTRCPAAA-IRDVLGQSMEQIKQELLATETRLCQASKQTEHYLASVEA 203
                 5666666666666654433.34457889999********************99998875 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0013
        YjcZ  81 allsqtlaekasaapklaqalaalaeefaarverkekaltqrellv 126
                 ++++q +a++++  p+l+q l a+ +++++ +er+e+ lt++e + 
  KKY22690.1 220 TKVNQIEAKLGQE-PELKQHLLAIETKVDQNSERLEQRLTRVETTL 264
                 5567777777775.66*************************99765 PP

>> DUF5446  Family of unknown function (DUF5446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       2.1   2.3e+03      15      36 ..     174     195 ..     166     206 .. 0.55
   2 ?    8.8   1.3    0.0015       1.7      12      70 ..     213     280 ..     205     282 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.1
     DUF5446  15 eeiEeeltevEkelseavnete 36 
                 e i +el + E  l +a ++te
  KKY22690.1 174 EQIKQELLATETRLCQASKQTE 195
                 3444444444444444444444 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0015
     DUF5446  12 qlLeeiEeeltevEkelse.........avneteaekeekeeerldllekElkdLvlCigklekaeeq 70 
                 q L+ iE +++++E +l++         a+        e  e+rl ++e  l+ +   i++++ ++e+
  KKY22690.1 213 QHLLAIETKVNQIEAKLGQepelkqhllAIETKVDQNSERLEQRLTRVETTLDQIAGLINQIKTGVEP 280
                 5688999999999998875222222222333444455677899***********99999999999886 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   6.0     0.029        33      33      94 ..     212     273 ..     136     291 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.029
                 HHHHHHHHHHHH...HHHHH...HHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHH CS
       DUF16  33 kqrLkkieakvdklgeqink...leqkvekqgekikelkveqkaqgeelnkvdetleliletLqk 94 
                 kq+L  ie+kv++ + ++ +   l+q+  + + k+    ++ +  +++l +v+ tl+ i+  +++
  KKY22690.1 212 KQHLLAIETKVNQIEAKLGQepeLKQHLLAIETKV---DQNSERLEQRLTRVETTLDQIAGLINQ 273
                 45555555555544443332111233333333333...333333334444444444444444443 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2     0.018        21      72     103 ..     169     200 ..     155     202 .. 0.89
   2 ?    4.7   2.8      0.03        34      41     101 ..     211     268 ..     206     274 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.018
                   CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
  Seryl_tRNA_N  72 liaevkelkeelkaleaelkeleaelekllla 103
                   l ++++++k+el a+e++l +++++ e++l++
    KKY22690.1 169 LGQSMEQIKQELLATETRLCQASKQTEHYLAS 200
                   6689************************9987 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.03
                   HHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  41 lqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekll 101
                   l+++l ++ ++ N++ ++ g+     e +++l+a   ++ ++ ++le++l+ +e+ l++++
    KKY22690.1 211 LKQHLLAIETKVNQIEAKLGQEP---ELKQHLLAIETKVDQNSERLEQRLTRVETTLDQIA 268
                   55556666667777777777666...56788999999999999999999999999998876 PP

>> DUF2630  Protein of unknown function (DUF2630)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.3       3.7   4.1e+03      14      37 ..      75      97 ..      64     100 .. 0.54
   2 ?    0.2   0.1      0.93     1e+03      11      29 ..     179     197 ..     171     224 .. 0.61
   3 ?   12.4   1.5   0.00015      0.17       7      54 ..     223     274 ..     218     285 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.7
     DUF2630 14 eeEheLrekleagelseeeErarL 37
                eeE++ r+++ + e+ ++e  +r+
  KKY22690.1 75 EEERTERSRS-TAEIATSERPHRI 97
                3444444444.4566666655555 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.93
     DUF2630  11 eLveeEheLrekleagels 29 
                 eL + E +L ++++++e  
  KKY22690.1 179 ELLATETRLCQASKQTEHY 197
                 5777777777666554433 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 0.00015
     DUF2630   7 arikeLveeEheLrekl..eagelseeeE..rarLkeleeeLDqcWDLLrqR 54 
                 ++i++   +E eL+++l   ++++++++E  ++rL+++e++LDq+  L++q 
  KKY22690.1 223 NQIEAKLGQEPELKQHLlaIETKVDQNSErlEQRLTRVETTLDQIAGLINQI 274
                 678888889999999862246778888887789************9999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       987  (0.0550505); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.54
# Mc/sec: 2066.31
//
Query:       KKY22691.1  [L=272]
Description: hypothetical protein UCRPC4_g03194 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.015   15.6   3.5       0.84   10.0   0.7    2.6  2  Tup_N         Tup N-terminal
       0.65    9.3   4.9       0.12   11.6   0.4    1.9  2  SLATT_5       SMODS and SLOG-associating 2TM effector domain 
        1.2    9.5   6.8       0.72   10.2   1.9    2.5  2  OmpH          Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> Tup_N  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.2    0.0026        16      13      57 ..      98     142 ..      94     153 .. 0.83
   2 ?   10.0   0.7   0.00014      0.84      34      76 ..     160     203 ..     140     204 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0026
       Tup_N  13 fdalsqeasslkaqkdeyelkiqsqiqElqqirqtlyeLeeahrk 57 
                 ++ ++  ++++ +  + + +k++s ++El++ +++++ Le++ r+
  KKY22691.1  98 YKDIHAAYKTMVNDYNGMGNKYRSLLEELKNTQEMVHGLESRVRE 142
                 566666677777788888999*******************98776 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00014
       Tup_N  34 iqsqiqElqqirqtlyeLeeahrkikqqYEeei.arLkaeLesr 76 
                 +++++ E   +r ++ +Le++ +++ + YE  + ++L++ L+++
  KKY22691.1 160 FHECAMENGELRAKIRDLENEKSEMARDYEVALaNALNHSLDQN 203
                 66777788899*******************88625799999886 PP

>> SLATT_5  SMODS and SLOG-associating 2TM effector domain family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.5      0.17     1e+03     116     138 ..     106     128 ..      85     145 .. 0.64
   2 ?   11.6   0.4   2.1e-05      0.12      93     140 ..     159     199 ..     155     224 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.17
     SLATT_5 116 edlkekykeiskeYeeiLdkyeN 138
                 + + + y+ + ++Y ++L++  N
  KKY22691.1 106 KTMVNDYNGMGNKYRSLLEELKN 128
                 33444455556666666666655 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2.1e-05
     SLATT_5  93 kfhkcaleLselynelrllliseedlkekykeiskeYeeiLdkyeNHd 140
                  fh+ca+e  el  ++r+l      ++ek + +   Ye +L++  NH+
  KKY22691.1 159 AFHECAMENGELRAKIRDL------ENEKSE-MARDYEVALANALNHS 199
                 69***************93......344444.6689***********6 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.9   0.00012      0.72      18      91 ..      95     196 ..      92     215 .. 0.57
   2 ?   -0.2   5.5       0.2   1.2e+03      41      87 ..     169     211 ..     156     272 .] 0.64

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00012
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.........................-HHHHHH..........HHHHHHHHHHHHHHHHHH CS
        OmpH  18 kaaqeqlekkfkklqaeleakekelqklqeelqkkakkl.e.......................keekeqe..........lqkkeqelqqkqqqkaqe 82 
                  +a +++ + +k++ ++++ +++++++l eel+ +++++                         +     +          l++k ++l++++++ a++
  KKY22691.1  95 ARAYKDIHAAYKTMVNDYNGMGNKYRSLLEELK-NTQEMvHglesrvreyensgsennddgnayR-----AfhecamengeLRAKIRDLENEKSEMARD 187
                 567778888889999999999999999999996.4445444755555554444444344333220.....13333333444555555555555555555 PP

                 HHHHHHHHH CS
        OmpH  83 lqkkqqell 91 
                 ++ + + +l
  KKY22691.1 188 YEVALANAL 196
                 555554444 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHTTTS........-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  41 elqklqeelqkkakkl.e......keekeqelqkkeqelqqkqqqkaqelqkkq 87 
                 el++++++l+++++++         ++    l++  q+l++           ++
  KKY22691.1 169 ELRAKIRDLENEKSEMaRdyevalANALNHSLDQNDQDLEK-----------AR 211
                 44444444443332221122111122222334444444444...........22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1043  (0.0581739); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 1814.22
//
Query:       KKY22692.1  [L=321]
Description: putative ferric-chelate reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-11   42.9   6.6      1e-10   41.8   6.6    1.5  1  Ferric_reduct  Ferric reductase like transmembrane component
    1.1e-07   32.1   0.0    1.3e-06   28.6   0.0    2.2  2  NAD_binding_6  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   6.6   1.1e-14     1e-10      24     124 ..       6      93 ..       1      94 [. 0.91

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1.1e-14
  Ferric_reduct  24 pltglsldklllfHkwlgvlafllallHvilyllnflrfsaldeerlldsllkkpynllGvlalllliilaitSlkfirrrlsyelFyylHhllyv 119
                    +  g+ ld++ l+H+wlg++a++ al+H+++ ++                ++k++  +  + a++ +++++++S+++ir r++ye+F   H +l++
     KKY22692.1   6 SGCGVRLDSYALMHRWLGRVAIVEALVHTVAAAVSH------------PLNFKRASDIAALTACITIAVILLSSIGYIR-RHFYEIFSKAHLVLVA 88 
                    5678999*************************9865............579****************************.*************999 PP

  Ferric_reduct 120 aylll 124
                    ++l +
     KKY22692.1  89 LALAA 93 
                    88876 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.043   3.9e+02       5      15 ..     111     121 ..     108     123 .. 0.87
   2 !   28.6   0.0   1.4e-10   1.3e-06       2      74 ..     143     215 ..     142     278 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.043
                    xxxxxxxxxxx RF
  NAD_binding_6   5 llvagGiGitp 15 
                    llva+G+G+t+
     KKY22692.1 111 LLVAAGSGFTG 121
                    89******996 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 1.4e-10
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   2 envllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeeksegnieihiYl 74 
                     +vll a GiGi++ ++ + +ll+ ++  ++kt++i l w   ++ +  w+ d+++el +++ ++ ++i+ ++
     KKY22692.1 143 GTVLLFATGIGIAGQLPYVTQLLEGYHDCKVKTRRIALFWELDSELHAAWVADMMKELLRRDTKRILDIRLFI 215
                    689**********************************************************999778887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2033.78
//
Query:       KKY22693.1  [L=945]
Description: putative patatin-like phospholipase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-14   52.0   0.3      1e-12   48.7   0.1    2.6  2  Patatin   Patatin-like phospholipase


Domain annotation for each model (and alignments):
>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.1   5.7e-17     1e-12       1     201 [.     453     683 ..     453     686 .. 0.76
   2 !    2.7   0.1    0.0068   1.2e+02     155     182 ..     673     700 ..     666     721 .. 0.78

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 5.7e-17
     Patatin   1 LvlsGGGsrgafslgalka......LkkelgerfdiisGtSaGAiialllalgrdpaalvddlrnlllnkifdrdllirelaanlaarlsgllgkgglf 93 
                 L+l+GGG+rg + lg +k+      L     + f ++ G S G++i l++  ++   + + ++ + l++++f+r  + +  +  + ++l   ++ +gl+
  KKY22693.1 453 LCLDGGGVRGMVPLGLMKRiqdcigLPIPFQKFFKVVFGISSGGLIILAMFINGWSVDHSTEMFENLAKLAFQRRKVLDIPFLSRLQELLMSYFADGLY 551
                 9******************7777775778899**************99999998888889999999999999999899999999*************** PP

     Patatin  94 daealrellrkv.......ladktlkrlsarlgklpllks....................lftanqavpaittataatastanranglytedddddvdl 165
                 +a +++  lr v       l+    +++ +r+g +    +                     +  ++  ++    +++ +++ + + +  ++d    v++
  KKY22693.1 552 SAQNIEAALRDVfgversiLDCSYATSTGTRIGVP----VatvqdrpscrvftnyngngvRHEDQGLIQSSLLSSVTLTQPETDDHIIKPKDGFGRVPV 646
                 **********5533333333333333333333333....13345666677666666555555555555555566666677777777777777777**** PP

     Patatin 166 adavraSsafPglfppvsldge.lyvDGGilsNvPil 201
                 ++++r +sa+Pg+fpp+ + +   + D G l+N P+ 
  KKY22693.1 647 WEIARSASAAPGFFPPRAISDVgVFQDPGPLENDPLV 683
                 ****************999554488888888888875 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.0068
     Patatin 155 ytedddddvdladavraSsafPglfppv 182
                  ++ +++d  ++  + a++afP + +p 
  KKY22693.1 673 DPGPLENDPLVSALCEATAAFPSVEEPD 700
                 5677888999999999*******99774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (945 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.51
# Mc/sec: 5531.88
//
Query:       KKY22694.1  [L=270]
Description: hypothetical protein UCRPC4_g03197 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.012   15.8   0.1      0.021   15.0   0.1    1.4  1  DUF2654   Protein of unknown function (DUF2654)


Domain annotation for each model (and alignments):
>> DUF2654  Protein of unknown function (DUF2654)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.1   1.2e-06     0.021      11      67 ..     131     188 ..     124     190 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-06
     DUF2654  11 knkRelkRLrkhaek.aliennkaqYvYaikklRdilkqtvnDelleiLWktsReqve 67 
                  n+ e++   kh  + +  + n  q   a  ++  i k ++  e+l+ L+kt+ + +e
  KKY22694.1 131 ENSLEMRHAVKHTSRpCKDDRNILQLISAGTQVAKIFKDAYAMEILNRLYKTTESTIE 188
                 6999********875489999**********************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1758.78
//
Query:       KKY22695.1  [L=774]
Description: hypothetical protein UCRPC4_g03198 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (774 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 5397.98
//
Query:       KKY22696.1  [L=88]
Description: hypothetical protein UCRPC4_g03199 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.013   14.5   0.0      0.015   14.3   0.0    1.0  1  Peptidase_C107  Viral cysteine endopeptidase C107


Domain annotation for each model (and alignments):
>> Peptidase_C107  Viral cysteine endopeptidase C107
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   8.1e-07     0.015     139     212 ..      14      87 ..       6      88 .] 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.1e-07
                     EETTEE-----CCGTT-EEE-TTSEEEEEEEEEES--EE-BTTTTB--TTT...T--S---EEEEE-TTS-BSSSSG CS
  Peptidase_C107 139 mseghhdiktvfgdcggmlfdpkgrllglhcagsddvvfmdtttgksniwt...syklqhpseimitlnneinlpnp 212
                     +s gh d+k+v   +    ++ +     l c   d++vf+d   gk ++wt   s k++ p+ i+ t+ +   l np
      KKY22696.1  14 LSPGHTDLKSVNKYVALEYIEAEEVERELLCKECDEIVFFD---GKRELWTtkgSGKMNLPAHILATVYKGYYLVNP 87 
                     789*********999999999999999*************9...7888887444679**********9999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.48
# Mc/sec: 555.79
//
Query:       KKY22697.1  [L=340]
Description: putative alpha-ketoglutarate-dependent sulfonate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-49  168.0   1.0    4.7e-49  167.6   1.0    1.1  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family
  ------ inclusion threshold ------
       0.34   10.8   1.8       0.36   10.7   0.0    1.9  3  YebG      YebG protein


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.6   1.0   5.3e-53   4.7e-49       4     267 ..      71     331 ..      68     332 .. 0.89

  Alignments for each domain:
  == domain 1  score: 167.6 bits;  conditional E-value: 5.3e-53
        TauD   4 pltpkfgae..gvdlsdleslddelkeelrellaeygvvvfrgfplspeqqlefarrfGplygtpgrgtntkygevldvssvyesadianlayttllwH 100
                 +lt+ +g+   gv+ls+   l+ ++ +el  l+ e+gvv+fr+++l+ e+q+++++  G l ++p  +++++ +  +++s++   +d  ++  +  +wH
  KKY22697.1  71 DLTESIGTVleGVQLSQ---LNGQQLDELALLVTERGVVFFRDQDLTTETQVKLFEHYGILDRHPAQKDQRHVTIRGSCSDS--RSDLTYTPWAQGGWH 164
                 78999999988888888...78888****************************************88888888888887764..5555555588999** PP

        TauD 101 tDlsylesppgiqlLhcleapatGGetpfvDgraaynaLpeelpellegltavrvyyhyrggglrteqelpavdkhprtghpvvrthpvltgrkallvn 199
                  D s++ +pp++++L+++e+p  GG+t++v+ +  y++L+++ ++l+e+l+av++ + ++  +    +   + +    t hp+vrthpv tg ka +vn
  KKY22697.1 165 ADTSFEINPPSYSMLRMEEHPNVGGDTAWVSQYGLYDELSDAYKRLFENLHAVHTSRLQYE-TILDLWGIGPNRPPIDTHHPAVRTHPV-TGLKAWNVN 261
                 *********************************************************9999.555555555666677899********8.********* PP

        TauD 200 ppfatrieglgtpeskelldaleelledp.eftyrfqwqeGdlvifdNrrvlHgrt..afdegeeRhllrc 267
                 + f t + +l++ es++lld+  +++ ++ ++ +r++w  G ++++dNr++lH+     +d+  +R+ +r+
  KKY22697.1 262 EGFVTGFAELKKLESDKLLDFSLQHIHSAdDHYVRWKWTVGAVAMWDNRCTLHRVIpgKYDAS-SRRGVRT 331
                 ****************************55*************************97667555.6766665 PP

>> YebG  YebG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0     4e-05      0.36      28      64 ..      66     103 ..      47     108 .. 0.82
   2 ?   -3.9   0.0       1.5   1.3e+04      28      35 ..     276     283 ..     275     284 .. 0.81
   3 ?   -4.1   0.1       1.7   1.6e+04       9      22 ..     324     337 ..     321     338 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4e-05
                 HHHHHHHHHHHHHHHHHHST.T--HHHHHHHHHHHHTT CS
        YebG  28 yDkmLdladeLaelLeqsel.gldeeqaEelallLaen 64 
                   k Ldl++++ ++Le  +l +l+ +q++elall+ e+
  KKY22697.1  66 VAKRLDLTESIGTVLEGVQLsQLNGQQLDELALLVTER 103
                 4699**************9989***********98775 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.5
                 HHHHHHHH CS
        YebG  28 yDkmLdla 35 
                  Dk+Ld++
  KKY22697.1 276 SDKLLDFS 283
                 59***985 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 1.7
                 XXXXXXX..XXXHH CS
        YebG   9 veRdGeekmtftsK 22 
                 ++R+G++  +f +K
  KKY22697.1 324 SSRRGVRTTVFGEK 337
                 57999999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.51
# Mc/sec: 2021.67
//
Query:       KKY22698.1  [L=796]
Description: putative intermembrane space aaa protease iap-1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-52  178.3   0.0    2.5e-52  177.5   0.0    1.4  1  Peptidase_M41  Peptidase family M41
    7.1e-42  143.0   0.0    1.8e-41  141.7   0.0    1.8  1  AAA            ATPase family associated with various cellular
      3e-07   30.1   0.0    7.6e-07   28.8   0.0    1.6  1  AAA_lid_3      AAA+ lid domain
      2e-05   24.6   0.0    5.8e-05   23.1   0.0    1.8  1  AAA_5          AAA domain (dynein-related subfamily)
      4e-05   23.9   0.2      0.062   13.6   0.1    3.1  2  AAA_22         AAA domain
    0.00011   22.7   1.1     0.0011   19.3   0.3    2.8  2  AAA_16         AAA ATPase domain
     0.0018   17.6   0.0     0.0034   16.6   0.0    1.4  1  TIP49          TIP49 P-loop domain
      0.002   17.9   0.0     0.0044   16.8   0.0    1.5  1  RuvB_N         Holliday junction DNA helicase RuvB P-loop dom
     0.0065   16.6   0.0       0.02   15.1   0.0    1.9  2  AAA_33         AAA domain
     0.0075   16.0   0.0      0.015   15.1   0.0    1.4  1  IstB_IS21      IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.026   14.6   0.0    1.7  1  AAA_14         AAA domain
      0.014   14.8   0.3      0.035   13.5   0.3    1.6  1  Mg_chelatase   Magnesium chelatase, subunit ChlI
      0.025   14.2   0.3       0.74    9.4   0.3    2.4  2  AAA_25         AAA domain
      0.029   13.5   0.0      0.052   12.7   0.0    1.3  1  DUF815         Protein of unknown function (DUF815)
      0.031   14.4   0.0        0.1   12.7   0.0    1.9  1  AAA_2          AAA domain (Cdc48 subfamily)
      0.036   14.6   0.0      0.075   13.6   0.0    1.5  1  AAA_18         AAA domain
       0.11   11.7   1.6       0.73    9.1   0.7    2.2  2  Zeta_toxin     Zeta toxin
       0.17    9.8   1.0       0.24    9.4   1.0    1.1  1  SCP-1          Synaptonemal complex protein 1 (SCP-1)
       0.21   11.1   0.1       0.56    9.7   0.1    1.7  1  AAA_7          P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> Peptidase_M41  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.5   0.0   2.6e-55   2.5e-52       1     190 [.     531     710 ..     531     711 .. 0.95

  Alignments for each domain:
  == domain 1  score: 177.5 bits;  conditional E-value: 2.6e-55
                    XX--HHHHHHHHHHHHHHHHHHCCSSS-S-B--EES--TTS-----------TSS-.-BHHHHHHHHHHHHHHHHHHHHHHH..S-BGGGHHHHHH CS
  Peptidase_M41   1 rvisekekklvAyHEaGHalvglllkeadpveKvtiiPRgqalGltlslPeedkls.ltkeellarlavllGGraaEelifg..evttGasnDlek 93 
                    rvi+ k+k  +AyHEaGHalv l+++++ p++K+tiiPRg++lG t++lPe+d+      +++la ++v++GG +aEeli+g  ++t+Gas+D+++
     KKY22698.1 531 RVIRPKDKLCTAYHEAGHALVNLFTPGSPPLYKMTIIPRGMSLGATHFLPEMDDEVsKAFDQYLADIDVSMGGYVAEELIYGtnKITSGASSDISN 626
                    58999**********************************************98654366689********************************** PP

                    HHHHHHHHHHTS---TTT-S--------..----.------SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEE-HHHHH CS
  Peptidase_M41  94 atkiarkmvtefGmsdklGpvsleeeeeeevflgkelkkekelseetaeeideevkelveeayerakeileekreelealaeaLlekEtldaeeie 189
                    at+ a+++vt+ G s klG+v l ++ +             +ls+et++ i++ev++++e+  +ra +il+e+r+ele l +aL+e+Etl+++e++
     KKY22698.1 627 ATNTATRLVTSMGYSRKLGNVDLASNYD-------------SLSPETKSLIESEVRDIIEAGRKRALKILTERRKELELLKDALMEYETLTSDEMS 709
                    **********************888655.............59***************************************************98 PP

                    H CS
  Peptidase_M41 190 e 190
                    +
     KKY22698.1 710 A 710
                    6 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.7   0.0   1.9e-44   1.8e-41       1     131 [.     321     450 ..     321     451 .. 0.97

  Alignments for each domain:
  == domain 1  score: 141.7 bits;  conditional E-value: 1.9e-44
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 +ll+GppGtGKTllakava e+g +f+ +sgse+ + yvg ++k++relf++a++k+ p i+fiDE+da++++rs+++ + +++++nqLlteldg++++
  KKY22698.1 321 ILLVGPPGTGKTLLAKAVAGESGCSFFYMSGSEFDELYVGVGAKRVRELFSQARAKS-PAIIFIDELDAVGGKRSERDPSYAKQTLNQLLTELDGFSSS 418
                 69******************************************************9.****************************************8 PP

                 SSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA 100 eskvivigatnrpdkldpallr.gRfdrkieie 131
                 ++ +i+igatn p++ld+al r gRfdr++ ++
  KKY22698.1 419 SG-IILIGATNFPQSLDKALTRpGRFDRRVVVP 450
                 55.**************************9887 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0     8e-10   7.6e-07      10      39 ..     482     511 ..     473     516 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 8e-10
   AAA_lid_3  10 rTeGySGADlaalcreAallAlrrgikeit 39 
                  T+G+SGADl++l++ Aa++A + ++k+++
  KKY22698.1 482 GTPGFSGADLENLVNQAAIRAASLKLKKVG 511
                 69*******************876666665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   6.2e-08   5.8e-05       2      75 ..     321     387 ..     320     393 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 6.2e-08
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGG CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEve 75 
                 +lLvGppGtgK+ la+ +a   +++++y+ +++    ++l  ++      ++    +l  +ar  +++i+++DE++
  KKY22698.1 321 ILLVGPPGTGKTLLAKAVAGESGCSFFYMSGSE---FDELYVGVGA----KRV--RELFSQARakSPAIIFIDELD 387
                 89****************************998...4677666664....222..333333333399999999987 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   6.6e-05     0.062       8      26 ..     321     339 ..     316     356 .. 0.88
   2 !    6.9   0.0    0.0076       7.2      85     133 ..     372     429 ..     359     433 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.6e-05
      AAA_22   8 lvvtGesGtGKTtllrrll 26 
                 ++++G++GtGKT+l++ ++
  KKY22698.1 321 ILLVGPPGTGKTLLAKAVA 339
                 799*************987 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0076
      AAA_22  85 alrarav..ielliiDEaqhlr...s.......eealeeLrsllnlsrkgvqliLvGtpel 133
                 ++r   +  ++++ iDE + +    s       ++ l++L + l+  +++  +iL+G +++
  KKY22698.1 372 QAR---AksPAIIFIDELDAVGgkrSerdpsyaKQTLNQLLTELDGFSSSSGIILIGATNF 429
                 233...23559**********88762667789999999997777769999999***99887 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.3   1.2e-06    0.0011      22     126 ..     310     412 ..     294     424 .. 0.59
   2 ?   -2.1   0.0       4.5   4.3e+03       3      32 ..     684     715 ..     683     716 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.2e-06
      AAA_16  22 grp......elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala.avpelag 113
                  ++        +ll+G++G+GK+ l+++++    ++g+ f++    ++      + l     + + +r+l ++a++++++      ++a++   +e ++
  KKY22698.1 310 FSTlggklpKGILLVGPPGTGKTLLAKAVAG---ESGCSFFYMSGSEF------DELYVGVGA-KRVRELFSQARAKSPAIIFIDELDAVGgKRSERDP 398
                 44444455699******************95...66655655555555......335555534.66677777766666665555555555543333333 PP

      AAA_16 114 aea.srllellkrl 126
                 + a + l++ll++l
  KKY22698.1 399 SYAkQTLNQLLTEL 412
                 33336666666655 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.5
      AAA_16   3 vGReeeleqLlsale..rvrsgrpelvllsGe 32 
                   R++ele L++al    + ++++ + +l+Ge
  KKY22698.1 684 TERRKELELLKDALMeyETLTSDEMSAVLRGE 715
                 679*******8888657666666677777776 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.6e-06    0.0034      51      88 ..     319     354 ..     287     386 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.6e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsev 88 
                 +++Ll+Gp+gtGkt la a++ e g    f  +sgse+
  KKY22698.1 319 KGILLVGPPGTGKTLLAKAVAGESG--CSFFYMSGSEF 354
                 89********************988..88999999986 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   4.6e-06    0.0044      34      70 ..     319     355 ..     282     394 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.6e-06
      RuvB_N  34 dhvllyGpPGlGkttlakiiakelgvklkitsgPvle 70 
                   +ll+GpPG Gkt lak +a e g ++   sg   +
  KKY22698.1 319 KGILLVGPPGTGKTLLAKAVAGESGCSFFYMSGSEFD 355
                 469**********************999999987665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.1e-05      0.02       2      25 ..     321     346 ..     321     447 .. 0.79
   2 ?   -2.9   0.0       7.2   6.8e+03      25      49 ..     700     724 ..     691     730 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.1e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..a 25 
                 +llvG+pG+GK+ la+ ++ + g  +
  KKY22698.1 321 ILLVGPPGTGKTLLAKAVAGESGcsF 346
                 689****************9999543 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.2
      AAA_33  25 avllssdtlrrrlfgtdqqsktdyt 49 
                 +++l+sd+++  l+g++ +++ ++t
  KKY22698.1 700 YETLTSDEMSAVLRGEKLKKLDELT 724
                 999*****99999997766665554 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.5e-05     0.015      49      81 ..     320     349 ..     316     400 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.5e-05
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvlfv 81 
                 +i+l+Gp+G+GK+ la a++ e   +g s +++
  KKY22698.1 320 GILLVGPPGTGKTLLAKAVAGE---SGCSFFYM 349
                 799***************9754...45555555 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.7e-05     0.026       5      85 ..     321     407 ..     318     452 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.7e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe.kllelileklkeekktylflDEiqev.........pewekalks 85 
                 ++++G+  +GKT l+k ++ e+     s++y++  + ++      + ++ el+ +  +++   ++f+DE   v         + ++++l++
  KKY22698.1 321 ILLVGPPGTGKTLLAKAVAGESG---CSFFYMSGSEFDELYVGVGAkRVRELFSQA-RAKSPAIIFIDELDAVggkrserdpSYAKQTLNQ 407
                 7899***************9999...9******99988866554331455566654.4458999*****9998776666666333344444 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   3.7e-05     0.035      25      43 ..     321     339 ..     315     341 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.7e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +llvGppG+GKt+lak+++
    KKY22698.1 321 ILLVGPPGTGKTLLAKAVA 339
                   89*************9875 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   0.00078      0.74      24      53 ..     311     338 ..     296     350 .. 0.77
   2 ?    1.9   0.0      0.15   1.4e+02     130     172 ..     366     408 ..     347     425 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00078
      AAA_25  24 wlvkgllpagelallaGapgtGKttlaldl 53 
                   ++g lp+g  +ll+G+pgtGKt la  +
  KKY22698.1 311 STLGGKLPKG--ILLVGPPGTGKTLLAKAV 338
                 5566666655..78***********98655 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.15
      AAA_25 130 vdaleaaieevegvrlvviDplsralgg.densnsdvgalveal 172
                 v++l  ++++ + ++ + iD l+++ g  +e + s +++ +++l
  KKY22698.1 366 VRELFSQARA-KSPAIIFIDELDAVGGKrSERDPSYAKQTLNQL 408
                 6777888888.88*************996666666667766665 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.5e-05     0.052      18      76 ..     275     341 ..     264     387 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.5e-05
      DUF815  18 pveevdevklddLvgidkqkeal......venteqf..leglpannvLLwGarGtGKSslvkallne 76 
                   ++ ++v+++d++g d+ k++l      ++n e+f  l g+  + +LL+G  GtGK  l ka+  e
  KKY22698.1 275 VSASKQTVRFTDVHGCDEAKDELqelvefLKNPERFstLGGKLPKGILLVGPPGTGKTLLAKAVAGE 341
                 445678899**********998722222246999994446999********************9876 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00011       0.1       6     100 ..     321     409 ..     318     431 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-H.HHHTTSEEEEETGGG------------.-HHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyv.gaeegGivllDEidKihpkessgadvS.regVqrdLL 100
                 ill+gp g+Gkt+laka+a    +    ++  +  se+ e   +   v    + + + + +a+   i+++DE+d +   ++s++d S  +  ++ LL
  KKY22698.1 321 ILLVGPPGTGKTLLAKAVAGESGC----SFFYMSGSEFDE---LYVGVGAKRVRELFSQaRAKSPAIIFIDELDAVGG-KRSERDPSyAKQTLNQLL 409
                 899******************997....888888888888...55555555555554440444556********9999.777788772344455555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.9e-05     0.075       1      28 [.     321     350 ..     321     379 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.9e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf..gvnl 28 
                 Ill G+pG+GKt lak+++ + g+   + +
  KKY22698.1 321 ILLVGPPGTGKTLLAKAVAGESGCsfFYMS 350
                 99****************877666554444 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.27   2.5e+02     150     179 ..     277     310 ..     250     314 .. 0.75
   2 ?    9.1   0.7   0.00077      0.73      14      40 ..     316     342 ..     308     346 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.27
  Zeta_toxin 150 e....gRlvpkeehdeafeglresvealeeekql 179
                 +     R++++   dea ++l+e ve l++  ++
  KKY22698.1 277 AskqtVRFTDVHGCDEAKDELQELVEFLKNPERF 310
                 144535*********************9987655 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00077
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdel 40 
                 + Pk ill+G pG GK+ la++++ e 
  KKY22698.1 316 KLPKGILLVGPPGTGKTLLAKAVAGES 342
                 679******************998775 PP

>> SCP-1  Synaptonemal complex protein 1 (SCP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.0   0.00025      0.24     483     565 ..     642     724 ..     625     743 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00025
                 XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXX CS
       SCP-1 483 eklknieltansdklllenkklvq.easdmvlelkkqqediinnkkqeermlkqietleeketnlrdelesv.rkelkqkrdevk 565
                  kl n++l++n d l+ e k l++ e  d++   +k+   i   +++e  +lk+  +l e et   de+  v r e  +k de+ 
  KKY22698.1 642 RKLGNVDLASNYDSLSPETKSLIEsEVRDIIEAGRKRALKILTERRKELELLKD--ALMEYETLTSDEMSAVlRGEKLKKLDELT 724
                 69*******************996378888888899999*************95..79999999999998874778888888865 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1    0.0006      0.56      34      54 ..     319     339 ..     312     389 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0006
       AAA_7  34 kpvllvGptGtGKtviikdll 54 
                 k +llvGp GtGKt+++k + 
  KKY22698.1 319 KGILLVGPPGTGKTLLAKAVA 339
                 679************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.82u 0.25s 00:00:01.06 Elapsed: 00:00:00.44
# Mc/sec: 5487.85
//
Query:       KKY22699.1  [L=380]
Description: putative di-cis-decaprenylcistransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-79  267.1   0.4    2.3e-79  266.1   0.4    1.4  1  Prenyltransf  Putative undecaprenyl diphosphate synthase


Domain annotation for each model (and alignments):
>> Prenyltransf  Putative undecaprenyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.1   0.4   1.3e-83   2.3e-79       1     222 [.      46     364 ..      46     366 .. 0.82

  Alignments for each domain:
  == domain 1  score: 266.1 bits;  conditional E-value: 1.3e-83
                   EE--HHHHHHHTT.S-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEEGGGGGS-HHHHHHHHHHHH...HHHHHHHHHHHHHT.TEEEEEESSGG CS
  Prenyltransf   1 imDGNrRwAkkrgleereeGhkaGaealkeilelclelgvkvvtvYafSteNfkRskeevdalmellk...eellkeelkellke.gvrvrviGdle 93 
                   +mDGNrR+A+++++e+ e Gh+ G+eal++ile+c+++gvkvvt+YafS+eNfkRsk evdalm+++k   +++++++  ell++ g+++r+ G++e
    KKY22699.1  46 VMDGNRRFARNHRIETIE-GHHLGFEALARILEVCYKSGVKVVTIYAFSIENFKRSKFEVDALMDMAKyqlTQIAEHG--ELLDRyGASFRIQGQRE 139
                   8************99888.************************************************97766677777..899988*********** PP

                   GS-HHHHHHHHHHHHHHT.TTTSEEEEEEEEE-HHHHHHHHHHHHHHTT...........................................SSSGG CS
  Prenyltransf  94 llpedvlealekaeeatkknnkklvlniavnYgsrdeiveavrelvkeks.........................................eekkke 149
                   l+++dvlea+++a+e+tk+nnk +vln++++Y+sr+ei++a+r++v++++                                         +     
    KKY22699.1 140 LVKPDVLEAVDRAVEMTKDNNK-AVLNVCFPYTSREEITTAIRSTVSDYTkpiqrptsptsrsqfsqsriehnirtqslnalsneekeeqsS----- 230
                   ******************7777.**********************99998777777777777777777666666666666665544433330..... PP

                   GHSH................................................................HHHHCTSTT..TSSS-SEEEEESS--S-T CS
  Prenyltransf 150 eide................................................................etlekhlytakalpdpDlliRtsGeeRlS 182
                      +                                                                e l++h+   ++ p++D+liRtsG+eRlS
    KKY22699.1 231 ---KtrslqihspsassitsegdtcdhshdspdtstttfyhdshdspdmkpisdptisqypspelitsEVLDSHMHIPSD-PPLDILIRTSGVERLS 323
                   ...0344444445555555555555556666666666666666667777777777777777777777799******9777.**************** PP

                   TSSTTTTTT-E..EEEESSSGGG--HHHHHHHHHHHHHCHHH CS
  Prenyltransf 183 nFllwqlayse..lyfldvlWPdfskedllealleyqkrerr 222
                   +F+lwq ++++  ++fl+++WP f+ +++l++++e+q +++r
    KKY22699.1 324 DFMLWQ-CHEDtdIVFLKTMWPAFDLWQFLPVIWEWQYKQKR 364
                   ******.666669************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       955  (0.0532657); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.53
# Mc/sec: 2176.29
//
Query:       KKY22700.1  [L=519]
Description: putative glycosyl hydrolase family 43 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-24   85.0   0.0    8.9e-24   84.3   0.0    1.3  1  Glyco_hydro_43  Glycosyl hydrolases family 43


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.0   4.9e-28   8.9e-24       4     234 ..      89     347 ..      87     370 .. 0.83

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 4.9e-28
                     ESBCSSEESEEEEEETTCEEEEEEEBTEE.....SEEEEEEESSSSSCEEEEECEESTTTCSTTTEECTEEEEEEE.ETTEEEEEEE.EEETTCC CS
  Glyco_hydro_43   4 PvlsgfypDpsilrvgedyYlvtstfewf.....pglrifhSkdLvnWkqvgrvlerrsqlsmkgknasWAPeisk.hdgkyylyyt.atkkgea 91 
                     Pv++   pDpsil+ ++  Y +++++          +++ +S+d  +W+++++    ++  s++     WAP++ +  dg + lyy+ + +   +
      KKY22700.1  89 PVIPFNFPDPSILHINDITYAFATNNRLStladlVHIQVATSQDNHTWSLHSDHDALPDPGSWALHFGVWAPDVVRlSDGSFVLYYSaQHRSHPG 183
                     9****************988888776544677779******************9999999999999888****975279********76677889 PP

                     CSEEEEEEESSTT..S--EECEESSCS...TSSECEEEEEEETT.SEEEEEEEEEHCC.............CSEEEEEEEEEET.TTTEEEEEEE CS
  Glyco_hydro_43  92 kqgifvvtadspe..Gpwsdpiklkts...gssgiDpslfeddd.GkkYlvwgqwdkr.............eghseiylaeldd.dtlklkgekt 166
                     +++i+ + +   +  Gp++ + + ++     +++iDp+ f d   Gk+Y++++   ++                  i+l+e ++ d+ +  g++ 
      KKY22700.1 184 THCIGAAFSPPSAplGPYTPLSEPIACpihLGGAIDPDGFYDPStGKQYISYKIDGNNlghggscrntippIVPTPILLQEVSPsDGVTPIGSP- 277
                     999*****9977778999877666544666*************99*******987777889999998777555678999999974677888888. PP

                     EEEECGCCTCTTBBEEEEEEEE.ETTEEEEEEEESTSSTT.EEEEEEEESSTTSGGEEECTCCSEE.T.BT CS
  Glyco_hydro_43 167 klikagtelkglkvtEGPhlyk.rdgyyYLlaaeggtgse.yavvvarsksllgPyewkkknpiltsr.sp 234
                      +i + + + ++ + E+P ly+ r+g+y+L+++ +   +e y+v++a+s  ++gPye + +n++l++   p
      KKY22700.1 278 REILDLDFALDGPLIEAPSLYRsREGIYFLFYSSDCFTTEgYDVKYATSPYIWGPYERA-ENSLLRTGdGP 347
                     56666555999**********868999*****966555545****************99.56666655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.34s 00:00:01.03 Elapsed: 00:00:00.54
# Mc/sec: 2916.89
//
Query:       KKY22701.1  [L=520]
Description: hypothetical protein UCRPC4_g03204 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.061   12.4   0.2      0.093   11.8   0.2    1.2  1  Alpha_TIF  Alpha trans-inducing protein (Alpha-TIF)
        0.4   10.0   1.8       0.95    8.8   1.1    1.9  2  FAM76      FAM76 protein


Domain annotation for each model (and alignments):
>> Alpha_TIF  Alpha trans-inducing protein (Alpha-TIF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2     1e-05     0.093      88     166 ..     378     461 ..     349     468 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1e-05
   Alpha_TIF  88 rGevalPspPktkaelPsyveevqdfflgelrareesyatllv..tyckalirylrasakkllrda...rvedknrdareklrq 166
                 +  + l +  k+ a+l + ++e+++ +++elrar+ +   l +  +y +al++   + a+++  d+   r +d++r+++e++r+
  KKY22701.1 378 NYRIILHTRDKELANLRTRLNEIDQVYRAELRARDFTIDDLTAklEYQEALMEAKLEQARHEVEDLweqRWKDRDRHLMERMRR 461
                 44577788888899999******************999887752279****998777777665543222899999999999986 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.15   1.4e+03     208     233 ..     282     307 ..     205     318 .. 0.60
   2 ?    8.8   1.1   0.00011      0.95     207     280 ..     369     446 ..     319     464 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.15
       FAM76 208 ksldsnssdhlvavtqLkeeiaslkk 233
                 ++     ++ +v v+ ++++i+ l k
  KKY22701.1 282 RHPLDDDNETVVGVSPIHQQIRDLDK 307
                 24445568999999999999999987 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00011
       FAM76 207 kksldsnssdhlvavtqLkeeiaslkkqleqkdq....ellekdkkitelkaellekekelreklkelekeakekiek 280
                  +++ +   +  + +    +e+a+l+ +l++ dq    el ++d +i +l+a+l+++e+ ++ kl++ ++e+++  e+
  KKY22701.1 369 INMVRTIDHNYRIILHTRDKELANLRTRLNEIDQvyraELRARDFTIDDLTAKLEYQEALMEAKLEQARHEVEDLWEQ 446
                 344544444455566666789999**99*9999844446999***************************999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       982  (0.0547716); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.35s 00:00:01.04 Elapsed: 00:00:00.53
# Mc/sec: 2950.85
//
Query:       KKY22702.1  [L=583]
Description: putative phosphate:h+ symporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-44  152.6  12.9    2.2e-44  152.1  12.9    1.1  1  Sugar_tr  Sugar (and other) transporter
    3.7e-17   62.3  20.6    3.7e-17   62.3  20.6    1.4  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.1  12.9   2.5e-48   2.2e-44       3     448 ..      50     540 ..      48     543 .. 0.82

  Alignments for each domain:
  == domain 1  score: 152.1 bits;  conditional E-value: 2.5e-48
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT.. CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk.. 99 
                 +va +g +   Yd++ +g ++ +l++++ + +  +k+     +   ++i  +++ G ++G+  +g+l+d++GRk  +    ++ + +++ qa+a +   
  KKY22702.1  50 VVAGVGFFTDAYDIFAVGLVTPMLGVVYWQDAAGKKKGSIP-TNSDTAIKVATSGGTVLGQAGFGYLADVVGRKRMYGLELIIIIFATLAQALASDSps 147
                 5666777999********************99999998885.66667778889************************9999999999999999995555 PP

                 .SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-....................TTHHHHHHHCC CS
    Sugar_tr 100 .nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn....................adgwrillglq 177
                  + v ++i+ Rv++G+g+G+ + l+++ +sE+A++k+Rga+++       +G++ a i+ l+  +  +                    ++ wri +g+ 
  KKY22702.1 148 mSIVGLIIFWRVIMGVGIGGDYPLSSIITSEFATTKWRGAMMGAVFAQQGLGQFAAGIVALIAVTGFKgsletaasashcsgvcgvavDKIWRIIIGFG 246
                 4556666666*************************************************9999777777999*************************** PP

                 HHHHHHHHHHGGGS---HHHHHHTT-HH.HHHHHHHH.HHHC.HHHHHHHHHHHHHHHHHHH.......HTTHHHHSH.....HHHHHHHHHHHHHHTT CS
    Sugar_tr 178 lvpallllilllflPESPrylvekgkee.eakevlak.lrge.edadrelaeekdsleaeqeee..kaswkellsskt..vrqrlligvvlqifqqltG 269
                 +vp  + l+++l++PE+Pry++ + ++  +a e ++  ++++ e+  +e++      ea ++ e  kasw+ ++   +     ++l+g +  +f   + 
  KKY22702.1 247 AVPGCIALYFRLTIPETPRYTFDVARDVdKAGEDIKAyVQNKrEGHPDEINRVHVLAEARDSLEtpKASWRDFWNHYGqwKNGKILLGTAGSWFFLDVA 345
                 *********************9998887777776666544442444444444444444443334679*******9999664445555554444443333 PP

                 HHHHHHHTTTHHHHSS-THH..........HHHHHHHHHHHHHHHHHH.HHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHH CS
    Sugar_tr 270 inaimyysptifenlglsks..........llvtiivgvvnfvatfva.iflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfia 357
                    +    + i++++g+s            ++++ii+++  ++    + + +vd +GR+++ l G+++ +i+f+++g   +++++ s     +++++++
  KKY22702.1 346 FYGLSLNNSIILSSIGYSGGdsmyislrrtAIGNIILVCAGAIPGYWVtVATVDTIGRKPIQLGGFIILTILFIVIG---FAYNHLS---DHGLLALYV 438
                 34444445566667777666666666666699999999998886665559**************************9...5555554...578999999 PP

                 HHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH.........T-HHHHHHHHHHHHHH..HHHHHHS--STT--C CS
    Sugar_tr 358 lfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaig.........ggyvflvfaglavlfi..ifvfffvpetkgrtl 445
                 l  ++f++g++ + +++  E fp++ Rs+   i++a+  +  ++ + +f  +  +           +++   +  ++a++++   f+ + +petk +tl
  KKY22702.1 439 LAEFFFNFGPNATTFIVPGECFPTRYRSTSHGISAASGKVGAIIAQCVFGPLRTRGAepgakgraaNPWLNHIMQIFALFMLcgCFTTLLIPETKRKTL 537
                 9999*********************************************9999988889******98888777777777665225888899******** PP

                 CCC CS
    Sugar_tr 446 eei 448
                 ee+
  KKY22702.1 538 EEL 540
                 *97 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3  20.6   4.2e-21   3.7e-17      40     352 ..     100     483 ..      54     484 .. 0.76
   2 ?   -4.3   0.1       0.7   6.3e+03     338     348 ..     515     525 ..     507     532 .. 0.42

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 4.2e-21
       MFS_1  40 lyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa.....sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfs 131
                 + + g+++++  +G+l+d +Gr+r++ l l++ +++ +l+  +a      s+  l+++ rv++G+g g+ +p++ +++++ ++ + rg ++g + a  +
  KKY22702.1 100 ATSGGTVLGQAGFGYLADVVGRKRMYGLELIIIIFA-TLAQaLAsdspsMSIVgLIIFWRVIMGVGIGGDYPLSSIITSEFATTKWRGAMMGAVFAQQG 197
                 456688999999************************.555545545444446668******************************************** PP

       MFS_1 132 lGailgpllggllasslg.......................Wravfyilaivsllafvlfllllpeepperkrkspkeee................... 188
                 lG   + +++ + ++ +                        Wr +  + a+ +++a+    + l+ ++++r ++  +++                    
  KKY22702.1 198 LGQFAAGIVALIAVTGFKgsletaasashcsgvcgvavdkiWRIIIGFGAVPGCIALY---FRLTIPETPRYTFDVARDVdkagedikayvqnkreghp 293
                 ******9**9999977778************************************944...44455555555555555556699999999999999999 PP

       MFS_1 189 ............kgtgpaplvpawkallkdpvlw...illialllfffgfsglltllpl...ylqevlgls...glllaglllallalvgailallagr 266
                                 ++p ++ w+ ++++   w    +l++ ++ +f++  +++ l l   ++ +  g+s   + ++++   a++ ++ ++++ + g+
  KKY22702.1 294 deinrvhvlaeaRDSLETPKAS-WRDFWNHYGQWkngKILLGTAGSWFFLDVAFYGLSLnnsIILSSIGYSggdSMYISLRRTAIGNIILVCAGAIPGY 391
                 9999999888874444444444.6666666666666646666666666666655555555554599999999995566666666666666666555555 PP

       MFS_1 267 lsdr..lgrrrrlllallllllaalglallavt...ssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 +++   +    r  + l++++++++++++++++    s + ll+++vl+ f + +  +++ + +  + +p++++ t  g+    g +g++++
  KKY22702.1 392 WVTVatVDTIGRKPIQLGGFIILTILFIVIGFAynhLSDHGLLALYVLAEFfFNFGPNATTFIVPGECFPTRYRSTSHGISAASGKVGAIIA 483
                 5544455556678888888888888888888886656666666677777785555559******************************9997 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 0.7
       MFS_1 338 sglfntagslg 348
                 ++lf+++g++ 
  KKY22702.1 515 FALFMLCGCFT 525
                 22222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 3848.58
//
Query:       KKY22703.1  [L=287]
Description: putative zinc finger protein gcs1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   12.1   0.1       0.29   11.2   0.1    1.6  1  ArfGap    Putative GTPase activating protein for Arf


Domain annotation for each model (and alignments):
>> ArfGap  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   1.6e-05      0.29      58     113 ..       1      56 [.       1      82 [. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.6e-05
                 TS---HHHHHHHHHTCHHHHHHHHTTTC-TTTSG-TTCGHHHHHHHHHHHHTCHTT CS
      ArfGap  58 ldkwedeelellkalgNkkaneileaklpkeekrskssskekreefirakYeekkf 113
                 +d +++ el  ++++gN+  +++++ ++p+ +  ++ + ke++e  + ++++e+  
  KKY22703.1   1 MDAFKTGELLRMQEGGNAAWQNFFNDNNPTGTTFEEATIKERYEGEVGEEWKERLT 56 
                 8999************************9998887888888888777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1923.68
//
Query:       KKY22704.1  [L=424]
Description: putative homoserine o-acetyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-42  143.9   0.0    1.3e-41  143.0   0.0    1.4  1  Abhydrolase_1  alpha/beta hydrolase fold
    0.00058   20.5   0.6    0.00081   20.1   0.6    1.5  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.0   0.0   1.4e-45   1.3e-41      23     255 ..       6     361 ..       3     363 .. 0.96

  Alignments for each domain:
  == domain 1  score: 143.0 bits;  conditional E-value: 1.4e-45
                    HHHHHTTSEEEEEEETTSTTSSSTTTGB...........CHHSHHHHHHHHH..HH.HHHCTTSSEE.EEEETHHHHHHHHHHHHHGGGEEEEEEE CS
  Abhydrolase_1  23 paLakdgfdvillDlrGvgySspapacin..........ddygtasvaddld..ri.ldalgddklt.lvGhSmGGmialayaaeyperVkalvll 104
                    +a++ ++f+vi+l+++G++y++++p ++           +++++ +v+dd++  +i ld+lg+++++ +vG+SmGGm++l++    +++V+++v +
     KKY22704.1   6 QAFDATRFFVICLNSLGSPYGTASPVTNKngdpkegrygPEFPLTTVRDDVYlhKIvLDHLGVRQIAaVVGGSMGGMLCLEWSFFGKDYVRSIVPI 101
                    455666*********************99*************************888***************************99********** PP

                    SE....CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH................................. CS
  Abhydrolase_1 105 ga....idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkf................................. 163
                    ++    +++ +s++eaqrq+++s+p++ dgy+  + ++++g+ +a+++a+l++r+r +++  f                                 
     KKY22704.1 102 ATsarhSAWGISWGEAQRQSIYSDPKYDDGYYSFEDPPASGLGAARMAALLTYRSRDSFETRFgrntpdlskkqgstsdgpsspsnehwsihndgh 197
                    ********************************************************9999999********************************* PP

                    .........................................................HCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHH CS
  Abhydrolase_1 164 .........................................................pdkskrfpssgsdnasslatgalksieqwpttdsaklll 202
                                                                             p+  +   s+++  +s+l ++++k+i++++++++ +  +
     KKY22704.1 198 tptrtsrppsisgtplpetenksflptrsngdstvsvvftdpqfhgttpqtmtempaPKPRRGVSSHYFSAQSYLRYQGQKFIKRFDANCYIAITR 293
                    ********************************************************8888888888****************************** PP

                    HHHC..............THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTS.EEEEEEETCSSSHHHH CS
  Abhydrolase_1 203 rlre..............lknvlaptlvisgtsDplvppkaledlaqllpk.krlvvisdagHlafle 255
                    +l+               l ++ +p+lv++++sD+l++  ++ ++a+ +++  + +++s++gH+afl+
     KKY22704.1 294 KLDThdvsrgrassiaeaLGQIEQPALVLGIESDGLFTFAEQQEIANGIRDsRLGKIDSPEGHDAFLL 361
                    *99999999999888888888888************************9998999***********96 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.6     9e-08   0.00081      22     139 ..       8     169 ..       6     368 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 9e-08
                    HHCCTCEEEEE--TTS..T.................S-GGCS--HHHCHHH..HHHHCCTT..TTSE.EEEEETCHHH.................. CS
  Abhydrolase_6  22 llaagvhvlapDlpGh..G.................rsdpppldledladl..aalldelaagggpv.vlvGHSlGGa.................. 77 
                    + a ++ v+++   G   G                 +++ p ++++d + +    +ld+l+   +++  +vG S+GG+                  
     KKY22704.1   8 FDATRFFVICLNSLGSpyGtaspvtnkngdpkegryGPEFPLTTVRD-DVYlhKIVLDHLG--VRQIaAVVGGSMGGMlclewsffgkdyvrsivp 100
                    56677777777777777774444444444333333334555566655.5556444999995..77778**********555555555555555555 PP

                    HHHHHHHCC..........EEEEES-..----TTTS----TTHHHHHHTT-C..CCCHCCHS-HSCCCCHHH CS
  Abhydrolase_6  78 lalaaapla........lvvgvlldppptalpagllaaalelllallallrl..lawlsreplprlfladed 139
                    +a+ a+++a        ++ +++ dp    +++g+ ++  +++ +l+a++++  l+++sr+++  +f ++++
     KKY22704.1 101 IATSARHSAwgiswgeaQRQSIYSDP---KYDDGYYSFEDPPASGLGAARMAalLTYRSRDSFETRFGRNTP 169
                    55555555588888877667788888...7777776666666666666555533455555444445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.51
# Mc/sec: 2507.58
//
Query:       KKY22705.1  [L=275]
Description: putative alpha beta hydrolase superfamily protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-20   73.8   0.1    3.6e-20   72.2   0.1    1.6  1  Hydrolase_4    Serine aminopeptidase, S33
    1.5e-19   70.7   1.0    1.7e-17   63.9   1.0    2.1  1  Abhydrolase_1  alpha/beta hydrolase fold
    9.7e-19   68.8  13.5    1.2e-18   68.5  13.5    1.0  1  Abhydrolase_6  Alpha/beta hydrolase family
     0.0027   16.3   0.0     0.0091   14.6   0.0    1.7  2  PAF-AH_p_II    Platelet-activating factor acetylhydrolase, is
     0.0033   17.1   0.0     0.0059   16.3   0.0    1.5  1  Esterase       Putative esterase
  ------ inclusion threshold ------
       0.01   15.7   1.3       0.18   11.6   1.3    2.2  1  Abhydrolase_3  alpha/beta hydrolase fold
      0.011   15.8   0.0       0.02   15.0   0.0    1.4  1  Abhydrolase_4  TAP-like protein
      0.021   13.6   0.0        4.6    5.9   0.0    2.2  2  Ndr            Ndr family
      0.056   13.2   0.1       0.59    9.9   0.1    2.4  2  Abhydrolase_5  Alpha/beta hydrolase family
      0.074   12.6   0.6       0.17   11.5   0.6    1.8  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
       0.16   11.2   0.0       0.21   10.8   0.0    1.1  1  Acyl_transf_2  Acyl transferase


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.1   2.2e-23   3.6e-20       6     238 ..      23     249 ..      21     250 .. 0.83

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 2.2e-23
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvag 103
                  ++v ++Gl+++ ++ya lae+L+a G+ v+ +D rGhG s  ++ +    + + dD+ +++e++     + p +l G Sm ++ a+ ++ r+pd++ag
   KKY22705.1  23 LIVCSPGLGDTRDAYAPLAEELVASGYRVARIDLRGHGDS-TAHFDRYGDEAIADDFLTVIEALG----GGPAVLAGASMSAAAAVIAAGRHPDRIAG 115
                  58999***********************************.666667778999*******98887....99*************************** PP

  Hydrolase_4 104 lilsaPalkikaklkappllklllkllgkllpklqv.snnlkadslsrdpevvaayeadplvhgkitvrlllelldamkrleer.aakitlPllllhG 199
                  ++l +P+l+    + ++++ +l   +  +  p +    + ++      d+++ +a ++   v++  +++ ++++  +  ++++    ++++P+l+++G
   KKY22705.1 116 IVLLGPFLRNGVGYILRWVFHL--AFYRPWGPYIWQyYAATLWP-GLGDKAKERAAKSTASVTRPGRWEAFHTMSGTDHSVVAPwIGRVQAPVLVVIG 210
                  ********99987744444444..44444444444312334444.4456666666788888899999****9999998888776379*********** PP

  Hydrolase_4 200 eaDkvvdpeasrelyerlgskdktlklypglyHellnEp 238
                  +aD+  +    ++   + + +d++  + +g+ H  ++E+
   KKY22705.1 211 DADPDWKDPLEEAKWVASNFTDVETVTVHGAGHAPMFER 249
                  ****99888887777778888***************996 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   1.0     1e-20   1.7e-17       1     257 []      22     250 ..      22     250 .. 0.81

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 1e-20
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGG CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeype 96 
                    p++v+ +Gl+++ d +a   la+ L  +g++v  +DlrG+g S+++     d+yg+ ++add+  + +alg ++ +l G Sm  + a  +a ++p+
     KKY22705.1  22 PLIVCSPGLGDTRDAYAP--LAEELVASGYRVARIDLRGHGDSTAHF----DRYGDEAIADDFLTVIEALGGGPAVLAGASMSAAAAVIAAGRHPD 111
                    689999************..***********************9999....78******************************************* PP

                    GEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHH.HHH CS
  Abhydrolase_1  97 rVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalks.ieq 191
                    r++++vllg+           r+ +    ++   +  ++ r+++  +++ ++a+l+  +         dk+k +  ++ +  + + ++++++ +++
     KKY22705.1 112 RIAGIVLLGP---------FLRNGVGYILRWV--FHLAFYRPWGPYIWQYYAATLWPGL--------GDKAKERAAKSTASVTRPGRWEAFHtMSG 188
                    **********.........3333333333332..4567888999999999999999996........68888888888777777777776652344 PP

                    HHHCCHHHHHHHHHCTHHHHSEEEEEEE..TTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHHSH CS
  Abhydrolase_1 192 wpttdsaklllrlrelknvlaptlvisg..tsDplvppkaledlaqllpkkrlvvisdagHlaflegp 257
                     +    a++++r +       p+lv++g  + D+ +p ++    a+ + +++ v++ +agH   +e+p
     KKY22705.1 189 TDHSVVAPWIGRVQA------PVLVVIGdaDPDWKDPLEEAKWVASNFTDVETVTVHGAGHAPMFERP 250
                    445555666666665......99999995556667777666666666899999999999999999875 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5  13.5   7.6e-22   1.2e-18       1     216 [.      24     252 ..      24     254 .. 0.63

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 7.6e-22
                    EEEE--GC.....GCHHHH.HHHHCCTCEEEEE--TTSTS-GGCS--HHH...CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC....EE CS
  Abhydrolase_6   1 vlllHGagssassWlvapL.aallaagvhvlapDlpGhGrsdpppldled...ladlaalldelaagggpvvlvGHSlGGalalaaapla..lvvg 90 
                    +++ +G+g ++++++  pL  +l a+g++v  +Dl+GhG+s+ + + + d   ++d++ ++++l  gggp+vl G S+ +a a  aa     +++g
     KKY22705.1  24 IVCSPGLGDTRDAYA--PLaEELVASGYRVARIDLRGHGDSTAHFDRYGDeaiADDFLTVIEAL--GGGPAVLAGASMSAAAAVIAAGRHpdRIAG 115
                    7899*****999998..9977777777************8888888888865344447777777..69999********99999944444677788 PP

                    .EEES-..----TTT.S----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHH.CCCCHCHCCCGHH........HHCCHHCHTTCCHHTT-TTGC.. CS
  Abhydrolase_6  91 .vlldppptalpagl.laaalelllallallrllawlsreplprlfladed.adaawrarlarla........allaglgllpaaawadlpvpl.. 173
                     vll p   +l+ g     ++ ++la++++  ++ w  +  ++ l+ +  d a+++ +   a +         ++++g +   +a+w ++  +   
     KKY22705.1 116 iVLLGP---FLRNGVgYILRWVFHLAFYRPWGPYIWQYY--AATLWPGLGDkAKERAAKSTASVTrpgrweafHTMSGTDHSVVAPWIGRVQAPvl 206
                    9*****...999999744444444455555555555542..2224444333211222222222221122221111112222235566666666631 PP

                    EEECTT-CHHHHCHHCCCH....STTEEETCE...SSS-HHHHSHHH CS
  Abhydrolase_6 174 lvlggeDplvprllerlla....qagarlpvvlpgaGHlphleepde 216
                    +v+g++Dp +++ le++       +++++ v++ gaGH+p++e+pd 
     KKY22705.1 207 VVIGDADPDWKDPLEEAKWvasnFTDVET-VTVHGAGHAPMFERPDI 252
                    14499999666555533333466677777.***************85 PP

>> PAF-AH_p_II  Platelet-activating factor acetylhydrolase, isoform II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.6e-06    0.0091      98     145 ..      19      66 ..       8      80 .. 0.83
   2 ?   -1.4   0.0      0.38   6.3e+02     272     317 ..     200     246 ..     196     261 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.6e-06
                  S-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE CS
  PAF-AH_p_II  98 ekyPlivFsHGLgafRtlYsalcielAskGfvvaavEHrDesAaatyv 145
                  +  Pliv s GLg  R  Y+ l+ el + G+ va ++ r +  +++ +
   KKY22705.1  19 GDGPLIVCSPGLGDTRDAYAPLAEELVASGYRVARIDLRGHGDSTAHF 66 
                  556*******************************99977766665554 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.38
                  G--S-EEEEEE.TTT--HHHHHHHHTT--TTS-EEEEEETT--GGGG CS
  PAF-AH_p_II 272 kvrqPllfins.ekfqtaedikkmkkvvslkkeskvitvkGsvHqnf 317
                  +v+ P+l+++  ++  + + ++++k v s+ ++ + +tv+G+ H+ +
   KKY22705.1 200 RVQAPVLVVIGdADPDWKDPLEEAKWVASNFTDVETVTVHGAGHAPM 246
                  6788998877614667888889999999999999999****999864 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.6e-06    0.0059     117     159 ..      90     145 ..      72     242 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.6e-06
                 EEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CC.............HCHHHC CS
    Esterase 117 ravaGqSmGGlgALilalkhpdrFgsvssfSpivnps.............namWgq 159
                  ++aG+Sm++ +A+i+a +hpdr + +  + p++                  +Wg+
  KKY22705.1  90 AVLAGASMSAAAAVIAAGRHPDRIAGIVLLGPFLRNGvgyilrwvfhlafYRPWGP 145
                 799*************************9999987768888888888888666666 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.3   0.00011      0.18      80     208 ..      93     244 ..      91     247 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
                    HHHHHHHHHHHHHHHTT---EEEEEEESE..............................-SSTSSTTSHH.HHHCHHTTTSSSSCHHHHHHHHHHH CS
  Abhydrolase_3  80 aGGnlaaavalrardegepkvagqvliyP..............................vtdlerteses.ikkaeeladgplltraaldlfwrly 144
                    aG+ ++aa+a+ a+ ++  ++ag+vl+ P                              +    +t  +   +ka+e a +++ +  +    w+++
     KKY22705.1  93 AGASMSAAAAVIAAGRHPDRIAGIVLLGPflrngvgyilrwvfhlafyrpwgpyiwqyyA----ATLWPGlGDKAKERAAKSTASVTRP-GRWEAF 183
                    799999999988888877778999999998888888888877766665555555533221....1111110111222222233222222.347777 PP

                    SSGGGGGSTTTSGGGCS-SST---EEEEEETT-TTHHHHHHHHHHHHHTT--EEEEEETTEETT CS
  Abhydrolase_3 145 lpeadrddplaspllaedlsglpptlvvvaefDplrdegeayaerlraagvevelieyegmvHg 208
                       +  d+  ++p  + ++   +p+lvv+++ Dp  ++  + a+ ++++ ++ve++ ++g+ H+
     KKY22705.1 184 HTMSGTDHSVVAPWIG-RV--QAPVLVVIGDADPDWKDPLEEAKWVASNFTDVETVTVHGAGHA 244
                    7777889999999988.55..69****************************************7 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.2e-05      0.02      33      77 ..     201     247 ..     179     265 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-05
  Abhydrolase_4  33 gaapvLllqnerDp..aTPyegakklakalggavlvtvegeGHgala 77 
                    ++apvL++ +  Dp    P+e ak +a+++++ + vtv+g+GH  + 
     KKY22705.1 201 VQAPVLVVIGDADPdwKDPLEEAKWVASNFTDVETVTVHGAGHAPMF 247
                    469***********4446*************************8665 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0028       4.6      83     131 ..      72     120 ..       4     129 .. 0.83
   2 ?    5.7   0.0    0.0031       5.1     218     276 ..     201     261 ..     186     264 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0028
                 HHHHTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES CS
         Ndr  83 ddladqllavldhfklksviglGvgaGAyilarfalkhperveglvLin 131
                 + +ad+ l+v++ +    ++  G+   A   +  a +hp+r+ g+vL+ 
  KKY22705.1  72 EAIADDFLTVIEALGGGPAVLAGASMSAAAAVIAAGRHPDRIAGIVLLG 120
                 6799**********9999999998877777777799***********86 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0031
                 SSS-EEEEEETTSTTHHHHHHHHHHS-TTTE..EEEEETT-TT-HHHH-HHHHHHHHHHHH CS
         Ndr 218 levkvllvvGdkspfvdevvevnskldkkkt..tllkvadsgglvleeqPdklaeslklfl 276
                 ++ +vl+v+Gd  p  ++ +e ++ +  + t  + + v+ +g  ++ e+Pd +  s+  fl
  KKY22705.1 201 VQAPVLVVIGDADPDWKDPLEEAKWVASNFTdvETVTVHGAGHAPMFERPDIVGPSFSGFL 261
                 55799**********999999999887765511679*****************99999887 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00036      0.59      11      88 ..      33     120 ..      23     127 .. 0.60
   2 ?   -2.9   0.0       3.1   5.1e+03     128     141 ..     231     244 ..     200     246 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00036
  Abhydrolase_5  11 eaesYaelaeklaksGyevvlvkl...Plnlavlgknkaee.......iikeapklekfvvgGhslGGvvasrfaaee.ekiegvvfla 88 
                       +Ya+lae+l+ sGy v  + l       a + +   e        +i++  +    v++G s+  ++a   a ++ ++i g+v+l+
     KKY22705.1  33 TRDAYAPLAEELVASGYRVARIDLrghGDSTAHFDRYGDEAiaddfltVIEALGGG-PAVLAGASMSAAAAVIAAGRHpDRIAGIVLLG 120
                    6789**************98776521134566665433333000111134433332.35777777777766666666656888888876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.1
  Abhydrolase_5 128 kdtkvvsieGgnha 141
                     d + v+++G  ha
     KKY22705.1 231 TDVETVTVHGAGHA 244
                    34566778888887 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.6    0.0001      0.17      51      91 ..      42      83 ..      12     243 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
                   HHHHHTT-EEEEEE-TTSTTS-S---TT.TTTHHHHHHHHHH CS
  Peptidase_S15 51 kvfvarGYavVvqdvrGtggSeGeftvg.dsdeaedgadvid 91
                   +++va+GY v   d rG+g+S+  f+   d+  a+d+  vi+
     KKY22705.1 42 EELVASGYRVARIDLRGHGDSTAHFDRYgDEAIADDFLTVIE 83
                   349*******************99998635555667777776 PP

>> Acyl_transf_2  Acyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00013      0.21      33      96 ..      24      86 ..      15     111 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
                   EEEE-TT-GGGGGGHHHHHHHHTTT--EEEE---B-------------HHHHHHHHHHHHHHHH CS
  Acyl_transf_2 33 iviasgfarrmdhfaglaeylsengfhvirydslnhvglssgeidefsmsvgkkslltvidwlk 96
                   iv + g+    d +a lae l   g++v r d   h g s+ + d++      + +ltvi+ l 
     KKY22705.1 24 IVCSPGLGDTRDAYAPLAEELVASGYRVARIDLRGH-GDSTAHFDRYGDEAIADDFLTVIEALG 86
                   66777999999********************96555.999999999999999999999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 1803.41
//
Query:       KKY22706.1  [L=570]
Description: putative wd repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-14   54.0  14.8     0.0003   21.5   0.1    5.8  5  WD40         WD domain, G-beta repeat
    0.00089   19.5   0.1        6.7    7.1   0.1    3.5  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   3.4e-08    0.0003       6      38 .]      79     112 ..      74     112 .. 0.89
   2 !   15.9   0.6     2e-06     0.018       5      38 .]     189     224 ..     186     224 .. 0.79
   3 !    4.6   0.1    0.0076        68      21      38 .]     262     279 ..     246     279 .. 0.83
   4 !   14.9   0.3   4.2e-06     0.038      14      38 .]     302     326 ..     286     326 .. 0.77
   5 ?    3.0   0.0     0.025   2.2e+02      12      32 ..     343     367 ..     331     372 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3.4e-08
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++++H   vts++ +p g+ +++Gs D+tv+++d
  KKY22706.1  79 VFKTHdRAVTSISIDPAGSRMITGSTDCTVKLYD 112
                 6899*444************************98 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 2e-06
                 EEEESS.SSEEEEEEETTSSE..EE.EEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgaw..la.sGsdDgtvriWd 38 
                 +  +GH s +ts a++p  +w  +a +G+ D t+riWd
  KKY22706.1 189 HMTKGHiSEITSGAWHPT-NWefFAtTGT-DSTIRIWD 224
                 6678**999999977777.7798662566.*******9 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.0076
                 TSSEEEEEETTSEEEEEE CS
        WD40  21 dgawlasGsdDgtvriWd 38 
                  g++l+s+  Dg++ +W+
  KKY22706.1 262 TGSLLVSAALDGSLLMWN 279
                 4667999999*******8 PP

  == domain 4  score: 14.9 bits;  conditional E-value: 4.2e-06
                 EEEEEETTSSEEEE.EETTSEEEEEE CS
        WD40  14 tslafspdgawlas.GsdDgtvriWd 38 
                 ++++ s+dg+++++ G+ D t+++Wd
  KKY22706.1 302 SGIDISSDGRLIVTrGG-DDTIKLWD 326
                 58899******997699.*******9 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.025
                 S....EEEEEEETTSSEEEEEETTS CS
        WD40  12 s....vtslafspdgawlasGsdDg 32 
                 s     t + fsp+ + +++Gs+ g
  KKY22706.1 343 SsqypTTNILFSPNASSVITGSETG 367
                 1455347788***********9644 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0   0.00097       8.7      36      70 ..      82     116 ..      74     135 .. 0.82
   2 !    7.1   0.1   0.00075       6.7      36      90 ..     193     256 ..     183     258 .. 0.82
   3 ?    0.7   0.0     0.073   6.6e+02      44      73 ..     304     333 ..     293     372 .. 0.80
   4 ?   -3.5   0.0       1.5   1.3e+04      40      64 ..     390     414 ..     383     415 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00097
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                  ++d+ v+s++  p g+ +  +  d +v+l+d  s 
   KKY22706.1  82 THDRAVTSISIDPAGSRMITGSTDCTVKLYDFASM 116
                  5899**************************98765 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00075
  ANAPC4_WD40  36 kedsevrsLaWkpdg.klLavaysdgevrlldaesgkvvhslsvksek........avtclgWg 90 
                  ++ se++s aW+p + +++a    d+++r+ d++ +   + + v+++k        ++t + Wg
   KKY22706.1 193 GHISEITSGAWHPTNwEFFATTGTDSTIRIWDVNAKMKQKDVIVHKSKaaglagraRMTAVAWG 256
                  566899999***976589***************9988888888888777777788888888887 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.073
  ANAPC4_WD40  44 LaWkpdgklLavaysdgevrlldaesgkvv 73 
                  +  + dg+l++    d +++l d  + k  
   KKY22706.1 304 IDISSDGRLIVTRGGDDTIKLWDTRKFKQP 333
                  55678999999999999**99998876544 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 1.5
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrl 64 
                     ++ W+++ + ++ + ++ge ++
   KKY22706.1 390 PLVAVFWHEKLNQIVTGSANGETHV 414
                  5567789999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 3461.65
//
Query:       KKY22707.1  [L=605]
Description: putative mitochondrial nglutamine methyltransferase mtq1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00016   22.2   0.1    0.00063   20.3   0.1    2.0  1  PrmC_N           PrmC N-terminal domain
     0.0052   16.6   0.0     0.0099   15.7   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
       0.02   14.4   0.0        2.6    7.6   0.0    2.5  2  MTS              Methyltransferase small domain
       0.03   13.7   0.0      0.049   13.0   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.043   13.1   0.0       0.31   10.3   0.0    2.3  2  N6_Mtase         N-6 DNA Methylase


Domain annotation for each model (and alignments):
>> PrmC_N  PrmC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   1.8e-07   0.00063      14      71 .]      28      85 ..      22      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.8e-07
      PrmC_N 14 gieeaeldAelLlahvlglsrsdlllrgerelteeq.....lerfeelierRaarePlqyIlG 71
                +ie+a+++ ++L +h+      +++++++++ ++++     l+ fe ++++Ra+++Plqy+lG
  KKY22707.1 28 EIESAQNELKWLREHAQ-----TVYAQRSKQFDATKplggwLSLFEGYVTQRARGKPLQYLLG 85
                68999999999999985.....5677777777777766666999******************9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.8e-06    0.0099       4      49 ..     147     200 ..     145     229 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.8e-06
  Methyltransf_31   4 glrvlDlGCGtGeltfelae........elgpkaevvGiDiseeaielArenaq 49 
                      +++vlD+ +GtG +++  +e         lg   ev G+D s+ a+ lA +n++
       KKY22707.1 147 HIKVLDVCTGTGCIALGVYEglfrnalaSLGASVEVLGFDKSQLAVDLAVKNRD 200
                      789*****************999999999999999**************99876 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00071       2.6      32      80 ..     147     204 ..     140     225 .. 0.75
   2 ?    4.1   0.0    0.0086        31      95     118 ..     256     279 ..     237     286 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00071
                 CSEEEEET-TTSHHHH.........HHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTG CS
         MTS  32 sgkvlDlGcGaGvlga.........alakespeaevtlvdvdarAlesakenleankl 80 
                 + kvlD+++G+G +++         ala+   ++ev  +d++  A+++a +n   n+ 
  KKY22707.1 147 HIKVLDVCTGTGCIALgvyeglfrnALASLGASVEVLGFDKSQLAVDLAVKNRDYNAK 204
                 4579********9998334333333567778888899999999999999999887765 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0086
                 TS-EEEEEE---STTTCHCHHHHH CS
         MTS  95 ekkfdlivsNPPfhagkatelava 118
                   + d++vsNPP+ +++  ++ ++
  KKY22707.1 256 RPQWDILVSNPPYISQQSYSNGTT 279
                 4579********999987666555 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.4e-05     0.049     160     210 ..     144     205 ..     138     235 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.4e-05
        PrmA 160 kege.evlDvGtGSGiLai.........aaakLgak.kvvavDiDevAvkvakeNaelNkve 210
                 ++++ +vlDv tG+G +a+         a a Lga+ +v++ D  ++Av+ a +N ++N  +
  KKY22707.1 144 QPQHiKVLDVCTGTGCIALgvyeglfrnALASLGASvEVLGFDKSQLAVDLAVKNRDYNAKH 205
                 455559*********99994444444444578999658*********************654 PP

>> N6_Mtase  N-6 DNA Methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.62   2.2e+03     173     189 ..      86     102 ..      81     111 .. 0.83
   2 ?   10.3   0.0   8.7e-05      0.31     110     158 ..     244     295 ..     140     309 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.62
    N6_Mtase 173 lkpkGraavvlangvLf 189
                 ++p G+ a+++ +gvL 
  KKY22707.1  86 TQPFGKLAILCRPGVLI 102
                 6788***********96 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 8.7e-05
    N6_Mtase 110 rlgdtlekpkfekdkkfdvvvaNppf.nqkewkektlekde.rfrea..vapk 158
                  + d l + k +   + d+ v+Npp+ +q+ +++ t ++   rf+    + pk
  KKY22707.1 244 SIYDCLRNSKGN-RPQWDILVSNPPYiSQQSYSNGTTTRSVrRFEPVsaLIPK 295
                 566788888888.9************666778666655554388877664444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 3846.26
//
Query:       KKY22708.1  [L=571]
Description: putative mfs multidrug protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-37  129.7  19.8    1.2e-37  129.7  19.8    2.0  2  MFS_1     Major Facilitator Superfamily
    8.1e-10   38.1   1.8    8.1e-10   38.1   1.8    2.0  2  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.7  19.8   1.3e-41   1.2e-37       2     349 ..     120     500 ..     117     503 .. 0.81
   2 !    6.8   1.4   0.00032       2.8     119     173 ..     484     543 ..     481     567 .. 0.76

  Alignments for each domain:
  == domain 1  score: 129.7 bits;  conditional E-value: 1.3e-41
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlga 99 
                 + ++++++la +++++ +   + edl+ s +  +l l ++ +++ava l+l+++ + +Grr v++ ++++f+l+ +++l ++ ++ ++lv+r+l Gl++
  KKY22708.1 120 CSMTLMIGLATTAYSSGID-SMVEDLNTSTDLGQLGLFTFNFVCAVAPLFLAPFCEFVGRRVVYIGAYFCFSLM-FIGLaLGKNIATILVCRALLGLFG 216
                 3344455555555555555.*******9999999999999999*******************************.55552669999************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 ++++ +++  ++d++p++er+r ++l++  + lG++ +p+ +g++ + +gWr++  i +++ + ++vl+ +++pe++  +   + ++++          
  KKY22708.1 217 CVGTILVGGTFSDMYPPDERARPMALFAYVAILGTVAAPIYAGFIDETIGWRWIEGIQGLANIPLLVLITIFFPETRGGKVLHKRAKKLrqatgddryk 315
                 ********************************************************************99***99999999999999999999999888 PP

       MFS_1 189 ..........kgtgpaplvp........awkallkdpvlw.illialllfffgfsglltllplylqevlgls.glllaglllallalvgailallagrl 267
                           k        +        a k+l + pv++ +  ++++ + ++++++l+ +p+ + e +++s g   agl + +lal++ i+ ll  + 
  KKY22708.1 316 aesdlenknvK--------DllynssvkAVKMLATEPVVFaFGTWIAFAW-AVTFLFLSVIPITFSEKRNWSeG--VAGLPYIALALGVTIAYLLNHFQ 403
                 88666555541........2444455556********9974333333333.38888*******88*******43..44433444444444443333333 PP

       MFS_1 268 sdr...........lgrrrrlllallllllaalglallavtssavllll....vlvliGfglgfvfpsllalasdlappeeagtasglfntags.lgg 349
                 +++           + ++ rl+ a+ +++ + +gl++ ++t+   l ++    +l+li +g +f+f s  +++sd ++ e +g+a++  +++++ lgg
  KKY22708.1 404 IRKyesimasndrhIVPESRLYGAMYGAIGLPIGLFIYSFTQYGDLPWIaptlALALIAIGIFFIFESCYSFTSDCYG-ESSGSAIAGQGLMRNtLGG 500
                 46688888888888888************************6666666666889999********************9.7777777766655552555 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00032
       MFS_1 119 rgraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll.....p 173
                  g+ai+  +++ +    ++pl+++ + +s g +++ ++la++++++  + ++l+     +
  KKY22708.1 484 SGSAIAGQGLMRNTLGGVTPLFASRFFHSMGSQWAGLLLALIAVFLTFIPYILFnyghiL 543
                 577888888888888899****************************99888888555543 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   1.8     9e-14   8.1e-10      28     248 ..     131     340 ..     114     372 .. 0.75
   2 ?   -3.2   2.1      0.32   2.8e+03     394     432 ..     494     532 ..     426     539 .. 0.54

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 9e-14
                 HHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  28 faknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmy 126
                 +a+  g ++ +++ ++s+ l  l +  f++++++  lf+ ++ +++GR+ +++ a ++f+   +  a+ k   ++  ++v+R l+G++  + ++lv  +
  KKY22708.1 131 TAYSSGIDSMVEDLNTSTDLGQLGLFTFNFVCAVAPLFLAPFCEFVGRRVVYIGAYFCFSLMFIGLALGK---NIATILVCRALLGLFGCVGTILVGGT 226
                 445555566666666666677788889***********************************99999999...9************************* PP

                 HHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHH CS
    Sugar_tr 127 isEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllill.lflPESPrylvekgkeeeakevlaklrgeedadrel 224
                  s + p++ R + + l+    ++G + a i   ++++t +   wr+  g+q +  + ll+l+ +f+PE+    v +++ ++ ++   + r +++ d e 
  KKY22708.1 227 FSDMYPPDERARPMALFAYVAILGTVAAPIYAGFIDETIG---WRWIEGIQGLANIPLLVLItIFFPETRGGKVLHKRAKKLRQATGDDRYKAESDLEN 322
                 ************************9988888877788888...**********99988777659*****544444444433333333333334444444 PP

                 HHHHHHHHHHHH.....HTTHHHH CS
    Sugar_tr 225 aeekdsleaeqeeekaswkellss 248
                 ++ kd l  +      s+k ++  
  KKY22708.1 323 KNVKDLLYNS------SVKAVKML 340
                 4444444333......44444433 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.32
                 HHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHH CS
    Sugar_tr 394 vnwlanflisllfpiiteaigggyvflvfaglavlfiif 432
                 + ++   ++ l+   ++ ++g  + +l+ a +av+ +++
  KKY22708.1 494 MRNTLGGVTPLFASRFFHSMGSQWAGLLLALIAVFLTFI 532
                 333333444444444444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4063.30
//
Query:       KKY22709.1  [L=540]
Description: putative protein pns1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-88  294.8  26.3    7.9e-88  294.8  26.3    2.2  2  Choline_transpo  Plasma-membrane choline transporter
  ------ inclusion threshold ------
       0.18   12.4   6.9       0.44   11.2   6.9    1.6  1  Pex14_N          Peroxisomal membrane anchor protein (Pex14p)


Domain annotation for each model (and alignments):
>> Choline_transpo  Plasma-membrane choline transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   5.0     0.025   2.2e+02      50     109 ..      86     142 ..      81     181 .. 0.58
   2 !  294.8  26.3   8.8e-92   7.9e-88       1     326 []     188     514 ..     188     514 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.025
  Choline_transpo  50 lllllvsa.fwivvavalylassgestdkvnsgsesglaavefessskvkalllyllfgll 109
                      +ll+l ++ f +v+ v ly +s+++      sg +  ++ ++f++++++++l++++l++ +
       KKY22709.1  86 ILLILTFLgFAAVSGVTLYSYSKYKG----FSGGGIYDSGNDFSLNTNTIVLFVFVLCIAF 142
                      44444444233333333333333322....3444444445567777777776666665332 PP

  == domain 2  score: 294.8 bits;  conditional E-value: 8.8e-92
  Choline_transpo   1 iillivavllllllivlrkrirlaiallkvaskaiksnpslllvplltllllllvsafwivvavalylassgestdkvnsgsesglaavefess 94 
                      i+++i+a++ ++++i ++ ri++++ +l++a+++ +++ ++++v+l+  +++++++a+++v++va+y+a   +s++++n ++ +g++  ++ s+
       KKY22709.1 188 IVFAIFAIFAIICFISWIPRIPFSVVMLQTAMDVARNYGHVFMVSLIGGIASVAFAAWFSVTLVAVYVAYEPGSESSTNPSCANGNGTGSC-ST 280
                      79*****************************************************************777777777789999999988999.88 PP

  Choline_transpo  95 skvkalllyllfgllWtleflralqqvtvagavasWYfs.kkkdlp.skfpvlkslkraltyhlGSialgSlilaivqllrlileylekklkkk 186
                      +kv++l++++ f+ +W++e+l++++++t+ag+++sWYf   k++   +k  ++++++r++ty++GSi +gSli+ai+++lr+++++++++  ++
       KKY22709.1 281 AKVIGLVVFVTFAGYWITEWLKNTIHTTIAGVYGSWYFCaGKQS-GmPKGVTRGAFRRCMTYSFGSISFGSLIVAIINMLRQACSIARHQEAAQ 373
                      ***************************************54444.358888**********************************999999999 PP

  Choline_transpo 187 enavakcllcclkcclwclekflkflnrnayimvaiyGksFcesakdafellkrnglrvavldsvvdfvlflgkllialltgliaylllkatlt 280
                       n +  +++c+l c++++le+ +kf+nr+a+ ++a+yGk+++++akd+++++k++g++++v+d++++ v+++g+l++a++++l+ayl+l+ t  
       KKY22709.1 374 GNLIGSIMFCVLGCIIGILEWAVKFINRYAFSYIALYGKAYIPAAKDTWRMMKDRGIDALVNDCLIGPVITMGSLFVAYASALFAYLYLEFTNP 467
                      999999************************************************************************************7655 PP

  Choline_transpo 281 npe.elnsplvpllvvfiiayliasiflsvyesavdtifvcfaeDpe 326
                      + +   ++++v+++++f+i+++i++if++ ++s+vdt+fv++a+Dp+
       KKY22709.1 468 AYNeGRTFTPVIMAFAFVIGLQICQIFMTPLSSGVDTLFVAMAWDPQ 514
                      55587888889**********************************95 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   6.9   4.9e-05      0.44      72     147 ..       7     102 ..       1     109 [. 0.55

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.9e-05
     Pex14_N  72 sssatpqpqaasqtsqsspspsppaqqqqqqyrpPivtypefltkppkppppPlr...........................twrdllitatalaglga 143
                  +s+ +++q+ +q+ q++++++p++q++  q + P+++yp      p++++pP                              w ++l ++t l+ +++
  KKY22709.1   7 AASYYNNNQQGYQSYQQPQYRQPNYQNNGYQ-QAPLQQYP------PPNQKPPTYdqnfapptdskqsfdqtfkiekpkwndLWAGILLILTFLGFAAV 98 
                 3334444444444444444444444433333.57888885......45556665567777777888899999999999666666666666665554444 PP

     Pex14_N 144 glyg 147
                 + + 
  KKY22709.1  99 SGVT 102
                 3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1327  (0.0740142); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.35s 00:00:01.14 Elapsed: 00:00:00.53
# Mc/sec: 3064.57
//
Query:       KKY22710.1  [L=1054]
Description: putative nonsense-mediated mrna decay protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.2e-16   57.5   0.0    9.6e-11   41.4   0.0    3.7  3  IBN_N        Importin-beta N-terminal domain
    5.3e-08   32.1   0.0    1.3e-07   30.8   0.0    1.7  1  Cse1         Cse1
     0.0043   17.1   0.4       0.17   11.9   0.0    3.0  3  Xpo1         Exportin 1-like protein
     0.0055   17.1   0.8       0.85   10.0   0.0    3.6  3  HEAT_2       HEAT repeats
  ------ inclusion threshold ------
      0.013   14.1   0.2          1    7.8   0.3    2.8  3  Adaptin_N    Adaptin N terminal region
      0.025   14.8   0.3       0.47   10.6   0.1    2.9  3  RTP1_C1      Required for nuclear transport of RNA pol II C-t
      0.033   13.9   0.0        2.8    7.7   0.0    3.3  3  RIX1         rRNA processing/ribosome biogenesis
       0.12   12.4   0.2        0.8    9.7   0.2    2.2  2  Cnd1         non-SMC mitotic condensation complex subunit 1


Domain annotation for each model (and alignments):
>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   4.3e-14   9.6e-11       1      73 [.      24      97 ..      24      98 .. 0.92
   2 ?    4.9   0.0     0.011        24      30      59 ..     407     436 ..     391     443 .. 0.80
   3 !    6.5   0.1    0.0034       7.7      20      46 ..     509     536 ..     487     556 .. 0.79

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 4.3e-14
                HHHHHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHC..GSXHHHHHHHHHHHHHHHH CS
       IBN_N  1 AekqLkqlekqpgflsallqilanseselevRqlAalyLknlitkhWsdeeekq..slpseekeqIrnnllnllg 73
                Ae  Lk +e+qpgf +al+ i++ +++   vR++ ++yLkn it+ W + ee    ++p++e+  +++ ll +l+
  KKY22710.1 24 AELDLKYAEEQPGFPNALVDIIQAEQDN-GVRLSTVVYLKNRITRGWAPIEEGVhkPIPDNERGPFKDRLLPMLA 97
                7889************************.*******************55555566****************997 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHHHHHGGSCCCHCGSXHH CS
       IBN_N  30 evRqlAalyLknlitkhWsdeeekqslpse 59 
                   +++A+l++ n++ +++ ++ ++q+lp e
  KKY22710.1 407 KKQVFALLQFVNTVVNKYESSPDDQKLPRE 436
                 4579***************77777788876 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0034
                 HHHHCTTSH.HHHHHHHHHHHHHHHHHH CS
       IBN_N  20 qilansese.levRqlAalyLknlitkh 46 
                 +il++ +++ l+vR++Aal L+ li++ 
  KKY22710.1 509 NILESMADPdLPVRVMAALALQPLIRHD 536
                 79999999978************99976 PP

>> Cse1  Cse1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0     6e-11   1.3e-07     184     315 ..     347     475 ..     333     529 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 6e-11
                 HHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCS.S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-..HHHHHHHHHHH CS
        Cse1 184 vlkeiiekvvlpnvtlResDeElFEdepieyirrDlEG.sdvdtRrraatdllkeLkekfeakvtevvleyvekllekykenpsan..WkkkdlaiyLv 279
                  ++++++++v p ++  ++D ElFE +p ey+++ l+   +v +   aat++l  L+++ +++v+  +l+ v+++++ky+++p  +   ++k+ a+ ++
  KKY22710.1 347 HMDTLVQHLVFPILCQSDEDLELFETDPSEYLHKKLNFyEEVSAPDMAATNFLIALTKSRKKQVFA-LLQFVNTVVNKYESSPDDQklPREKEGALRMI 444
                 5889********************************96257889999****************996.6799*********9986552268999****** PP

                 HHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH CS
        Cse1 280 tslavkgevtksGvtstnelvdvvdFfakeiapdLe 315
                  sla+    +ks +       +v  Ff +++ p+  
  KKY22710.1 445 GSLASVILGKKSPIAD-----QVEYFFVRHVFPEFR 475
                 ***9987777666655.....356677777777766 PP

>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   7.6e-05      0.17       1      97 [.     100     192 ..     100     233 .. 0.68
   2 ?    1.8   0.1       0.1   2.3e+02      69     140 ..     535     607 ..     526     621 .. 0.73
   3 ?   -3.4   0.0       3.9   8.8e+03      99     130 ..     703     734 ..     668     744 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.6e-05
                 THHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCT..HHHHHHHHHHHHHHHHHHHTSHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        Xpo1   1 pkflrnklaealaelflqeypnnWpsffddllsllsss.psglelllriLkvlpeEiadfsrskleqerrndlkdllrsnvqkilelllqileqsqsk 97 
                 p+ +r++l  +l +++ +++p++Wp+f+d  l+ll+++ ++ + + l+ L+++      f    ++ e r dl +  ++ ++ +l l  ++le+ +++
  KKY22710.1 100 PPQIRSQLVPILQTILGNDFPEKWPNFMDITLQLLNTHdANSVFAGLQCLLAICRTYR-F----KSGESRADLDKIVQAAFPPLLALANRLLEEDSND 192
                 6789*********************************754444444555555444332.3....2344455666666666666666666666666554 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT..TS-HHHHHTSCHHHHHHHHCCSCC CS
        Xpo1  69 rndlkdllrsnvqkilelllqileqsqskkqsselveavLkclsswvs..widiglivnnpllnllfqlLsdpe 140
                 +  ++ ++++n+++i++ ll++ ++ + + + + + e   +++s  +    + ++  + +++l ++ +lL++ e
  KKY22710.1 535 HDVIRMAMQQNIPQIMQQLLKLANEVDVD-ALANVMEDFVEVFSEQLTpfAVALSEQLRDTYLRIVRELLERNE 607
                 56678889999999999999888887765.47777777777777666655566666666667777777666555 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.9
                 HHHHHHHHHHHHHHHHTTTS-HHHHHTSCHHH CS
        Xpo1  99 qsselveavLkclsswvswidiglivnnplln 130
                   +  +e +L +l ++v     gli+++++l 
  KKY22710.1 703 GAELYLEDMLPALDNFVTYGHQGLIAKPQYLA 734
                 23556677777777787777777777776665 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.065   1.5e+02       6      55 ..      11      61 ..       6      68 .. 0.66
   2 ?   -2.5   0.0       3.2   7.1e+03       4      27 ..      92     114 ..      90     151 .. 0.63
   3 !   10.0   0.0   0.00038      0.85      10      56 ..     475     530 ..     469     570 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.065
      HEAT_2  6 qalendpdpevrraairaLgrignp.ealpaLvelled.edpavRraaaeaL 55
                qa   d++ +vrr+a   L    ++    +aLv++++  +d  vR   + +L
  KKY22710.1 11 QAT-LDANADVRRQAELDLKYAEEQpGFPNALVDIIQAeQDNGVRLSTVVYL 61
                444.578888888888888877554144567777775415667777777666 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.2
      HEAT_2   4 LlqalendpdpevrraairaLgri 27 
                 Ll  l  ++ p++r + +  L +i
  KKY22710.1  92 LLPML-ASSPPQIRSQLVPILQTI 114
                 67777.677788888877777754 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00038
      HEAT_2  10 ndpdpevrraairaLg.....rignpea....lpaLvellededpavRraaaeaLg 56 
                 ++p+ ++r++a+++L      ++++p       + ++e + d+d  vR +aa aL 
  KKY22710.1 475 RSPHGYLRARACDTLEkfqqlDFKDPNNlmiiYRNILESMADPDLPVRVMAALALQ 530
                 578999**********77655555552244458889999999*************6 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.02        45     351     407 ..      98     155 ..      90     173 .. 0.71
   2 ?   -1.6   0.0      0.34   7.6e+02     463     513 ..     474     523 ..     406     534 .. 0.64
   3 ?    7.8   0.3   0.00046         1     329     398 ..     538     614 ..     535     619 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.02
                 SXXHHHHHHHHHHHHHH.HHHSCCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHH CS
   Adaptin_N 351 vadedfksklvkaIgrl.aekfatdaewvldvllellslsgesvkdeivevirdliqk 407
                 ++ ++++s+lv  + ++ +  f++++ +++d+ l+ll +++   + + ++ ++ + ++
  KKY22710.1  98 SSPPQIRSQLVPILQTIlGNDFPEKWPNFMDITLQLLNTHDANSVFAGLQCLLAICRT 155
                 5567788888888876515666999999999999999999976655555555555554 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.34
                 TTTSXHHHHHHHHHHHHHHHHCXGCC.THXHHHHHHHHHHHXXSHHHHHHH CS
   Adaptin_N 463 fvlesekvklqiltalvKlyltspdketqekliqlvlslatssdlevrdRa 513
                 f + +  +++ ++ +l K+++++ +   ++++i +   l + +d ++  R 
  KKY22710.1 474 FRSPHGYLRARACDTLEKFQQLDFK-DPNNLMIIYRNILESMADPDLPVRV 523
                 5555555566666666666655543.3334554444444444444443332 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00046
                 CCCXXTTTHHHHHHHHHHHTTSSXXHH........HHHHHHHHHHHHHHHS.CCHHHHHHHHHHHHHTTXXHHHHHHHH CS
   Adaptin_N 329 lklvdesNvkeivkeLkkyvkevaded........fksklvkaIgrlaekf.atdaewvldvllellslsgesvkdeiv 398
                 ++++ ++N+ +i+++L+k ++ev d d        f++   +++  +a++  ++  +++l ++ ell+ ++e+ +de++
  KKY22710.1 538 IRMAMQQNIPQIMQQLLKLANEV-DVDalanvmedFVEVFSEQLTPFAVALsEQLRDTYLRIVRELLE-RNETKGDEYA 614
                 68999**************9888.88788888888999999999999999988889999999999999.6666666665 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.37   8.3e+02       7      71 ..      95     156 ..      90     160 .. 0.80
   2 ?   -2.1   0.0         2   4.4e+03      59      95 ..     394     432 ..     393     445 .. 0.67
   3 ?   10.6   0.1   0.00021      0.47       1      47 [.     507     555 ..     507     579 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.37
     RTP1_C1   7 dlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvf 71 
                  l ++ + +r++ +  L++++ +      +++++ +++ l+ L+  d     +  ++L a++ ++
  KKY22710.1  95 MLASSPPQIRSQLVPILQTILGND---FPEKWPNFMDITLQLLNTHDANSVFAGLQCLLAICRTY 156
                 677788888888777777777666...58999************999888888999999988765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2
     RTP1_C1  59 naikgLvaLadvfpeevlklL..leeyeeenekeslder 95 
                 +a + L aL++  +++v+ lL  ++ + ++ e++  d++
  KKY22710.1 394 AATNFLIALTKSRKKQVFALLqfVNTVVNKYESSPDDQK 432
                 677889999999999998654224444555555555554 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00021
     RTP1_C1   1 lqealkdlqdpllpvrahglvlLrkliekkske..avldiekilkllle 47 
                 ++++l+++ dp lpvr+ + + L+ li++       +++i++i++ ll+
  KKY22710.1 507 YRNILESMADPDLPVRVMAALALQPLIRHDVIRmaMQQNIPQIMQQLLK 555
                 6789*************************97444455556666665555 PP

>> RIX1  rRNA processing/ribosome biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.11   2.5e+02       9      74 ..      96     154 ..      90     164 .. 0.75
   2 ?    7.7   0.0    0.0012       2.8     124     178 ..     537     592 ..     528     597 .. 0.89
   3 ?   -0.9   0.0      0.51   1.1e+03      61     106 ..     753     798 ..     752     817 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.11
        RIX1   9 LsstppkelpsilstlashkllceellkseleelvhklvtrilsLlqskspegrwaGvcLakvtve 74 
                 L+s+pp+  ++++++l++ +l ++ ++k +  +    ++  +l+Ll+ +++ +++aG++ + ++++
  KKY22710.1  96 LASSPPQIRSQLVPILQT-ILGNDFPEKWP--N----FMDITLQLLNTHDANSVFAGLQCLLAICR 154
                 666666666666666666.44446666654..4....899999***************99999997 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0012
        RIX1 124 ltREiltpnlpkfitallqlleee.letvlealstllplhPttfRpfankirslll 178
                 + R + + n+p++++ ll+l++e  ++   +++ + +  ++ ++ pfa  + + l+
  KKY22710.1 537 VIRMAMQQNIPQIMQQLLKLANEVdVDALANVMEDFVEVFSEQLTPFAVALSEQLR 592
                 67889999**************7799999999999999999999999998887665 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.51
        RIX1  61 grwaGvcLakvtveesgeellssgstWlrallsiLekpdppavlel 106
                 +r +G++La +++ + + ++ ++   +++  +++L  +++++++++
  KKY22710.1 753 DRICGCKLAEAIMLNLRGHVDNYVPIFIELAMNVLAGSSQKTLVKS 798
                 589**********988888888888899999999998866444433 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.97   2.2e+03      57     105 ..      85     134 ..      82     154 .. 0.75
   2 ?    9.7   0.2   0.00036       0.8      25      71 ..     509     558 ..     497     615 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.97
        Cnd1  57 kg.flselaklleDenprVvanalaalteiseksenaiynllpdiiskls 105
                 +g f ++l+ +l  + p++++  + +l+ i+ ++  +   ++ di  +l+
  KKY22710.1  85 RGpFKDRLLPMLASSPPQIRSQLVPILQTILGNDFPEKWPNFMDITLQLL 134
                 5668899999999999****999999999998865555555555555444 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00036
        Cnd1  25 pLrkrLkDedpyVRktaaivvakLilndmvk...ekgflselaklleDen 71 
                 ++ +++ D+d  VR  aa+++  Li++d+++   ++++ + +++ll+  n
  KKY22710.1 509 NILESMADPDLPVRVMAALALQPLIRHDVIRmamQQNIPQIMQQLLKLAN 558
                 56678999999999999999999999996552213444445555553333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1054 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      652  (0.0363657); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.54
# Mc/sec: 5861.85
//
Query:       KKY22711.1  [L=1291]
Description: putative dead deah box rna helicase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-53  179.3   0.7      1e-52  178.1   0.7    1.6  1  DSHCT           DSHCT (NUC185) domain
    6.2e-40  136.1   0.0      2e-39  134.5   0.0    1.8  2  Ski2_N          Ski2 N-terminal region
    5.2e-20   72.5   0.1    8.6e-20   71.8   0.1    1.4  1  rRNA_proc-arch  rRNA-processing arch domain
      1e-17   64.5   0.0    2.2e-17   63.4   0.0    1.5  1  DEAD            DEAD/DEAH box helicase
    1.4e-06   28.7   0.0    4.7e-06   26.9   0.0    2.0  1  Helicase_C      Helicase conserved C-terminal domain
    0.00011   22.2   0.0    0.00027   21.0   0.0    1.6  1  ResIII          Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
        9.4    7.0  15.1         18    6.1  15.1    1.4  1  GRP             Glycine rich protein family


Domain annotation for each model (and alignments):
>> DSHCT  DSHCT (NUC185) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.1   0.7   3.9e-56     1e-52       2     163 ..    1114    1285 ..    1113    1286 .. 0.97

  Alignments for each domain:
  == domain 1  score: 178.1 bits;  conditional E-value: 3.9e-56
       DSHCT    2 ntvtlkGrvaaeirsedeLlltellfsgvlddlepeelaAllsalvfeekredeeekepklseeleealeelkeiaeriakvs.............. 84  
                  ++v+lkG+va+ei+s+deL+lte++++++l d+epee++Allsa+vfeek+++    ep+l++ le+  +++ eiae++++++              
  KKY22711.1 1114 DRVQLKGKVACEIHSADELVLTEMILENALADFEPEEIVALLSAFVFEEKTDN----EPNLTASLEKGKAKIIEIAEKVNQYQimhqvilssedsnd 1206
                  789**********************************************9655....4889*******************999************** PP

       DSHCT   85 vesrldlglvevvyaWakgasfaellektdldeGdiVRllrrleellrqlakaakvigneeLkkkaeeaielikRdiVf 163 
                  + sr+++gl+evvy+Wa+g+sf+++++ td+ eG+iVR+++rl+e++r+++ aa++ig+++L+ k++ a+elikRd++f
  KKY22711.1 1207 FVSRPRFGLAEVVYEWARGMSFNRITDLTDVMEGTIVRVITRLDETCREVKTAARLIGDPTLYTKMQTAQELIKRDVIF 1285
                  88899*************************************************************************8 PP

>> Ski2_N  Ski2 N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.5   0.0   7.7e-43     2e-39       1     133 [.      71     215 ..      71     217 .. 0.89
   2 ?   -2.6   0.0       1.7   4.3e+03      97     126 ..    1200    1229 ..    1184    1232 .. 0.78

  Alignments for each domain:
  == domain 1  score: 134.5 bits;  conditional E-value: 7.7e-43
      Ski2_N   1 dklqthwdrkkdyksllkippsasrtslefkRkgleGkivgykevslveasnataknSlSlsRkpgpksdfvrGsssnlpFaPGGle.eevlkdse... 95 
                 +klq++wd   dy+ ll++ p+++rt ++f+R+gleG+++gykev +v+a++ataknS+Sl Rkp+ + dfvrG ++++pF+PGGl+  ++++  e   
  KKY22711.1  71 NKLQQRWDAPIDYTRLLELTPTQTRTVTRFIREGLEGRVTGYKEV-TVPANSATAKNSTSLLRKPADRADFVRGAAGFFPFTPGGLDgVDAIAAVEdqg 168
                 689******************************************.*****************************************855665333357 PP

      Ski2_N  96 .......kaseseekllhrd..ekglltippGfsrGldfkedeeeee 133
                        ++++s  ++++++  ++gll++ppGfsrGl++++ + + +
  KKY22711.1 169 vepqidaQSKKSRLDRVIDFgsGDGLLEVPPGFSRGLRPEKLKPKAS 215
                 889988877777788887745599***************99888765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.7
      Ski2_N   97 aseseekllhrdekglltippGfsrGldfk 126 
                  +se++++++ r + gl ++   + rG++f+
  KKY22711.1 1200 SSEDSNDFVSRPRFGLAEVVYEWARGMSFN 1229
                  45556778888999*************996 PP

>> rRNA_proc-arch  rRNA-processing arch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.1   3.3e-23   8.6e-20       1     269 [.     821    1087 ..     821    1088 .. 0.76

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 3.3e-23
                      HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTC--TT....HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHGGG--TTEEEEEEETTTEEE CS
  rRNA_proc-arch    1 EyMlerSFsqfqnqkslpelekklkeleeelksitied....eedieeyyklrqqleelreeirkiltkpknilpfLqpGRlvrvksnddldf 89  
                      E+M++rSFs++++q+ lp++ek+++  e+ l++i  e      +d+e ++ +   +e+l ++++ +++ ++ + +  +p Rl+ +k +d+ + 
      KKY22711.1  821 EEMIKRSFSENATQALLPQHEKQVELSEANLSKIRREPceicDQDLEACHSAAMSYEKLAKDLHMLVLGSPIGKRQWSPRRLIAFK-RDGIR- 911 
                      9********************************99774778888*******************************99********9.55333. PP

                      EEEEEEEEE...E-SSST.TB---TCTTEEEEEEEEEEETTS-GGG--TT--S--TT--B...-.TT..S-EEEEEEEEEGGGEEEEEEEEE- CS
  rRNA_proc-arch   90 gwGivlnfk...krnknskeeeasdeesyvVdvllvlsenskrkdedgekseesaeelkP...k.agdrekgevevvpvplkcieaiSsvrlk 175 
                       +Gi+++     +                 V+vl+   ++ kr+   +++   + e ++P   + ++  ++ + +v p+++++iea++   +k
      KKY22711.1  912 TVGILMREGlliRA-----------P-IPYVEVLHLEPLDAKRQ---ASDLLPYLENFRPlftPlPNSPDDMRIRVTPITVESIEAVTDTLVK 989 
                      7******8533211...........1.12355554444443343...223344555566655423444456667******************* PP

                      --SS........TTSTTHHHHHHHHHHH.HHHHSS---B--TTTTS----HHHHHHHHHHHHHHHHHHTSGG.GSSSHHHHHHHHHHHHHHHH CS
  rRNA_proc-arch  176 lpkd........lrkseareevakavqe.lkrrfpgiplldpikdmkikdeefkkllkkiealesrlaknpllhspnleelyalyekkvalqe 259 
                       + +         +k+ a++++++      ++       +d     k++d ++ ++l +++++ +  ++ ++l +p++ +++++ ++++ l+e
      KKY22711.1  990 FDGPhwylnivkEQKRFAEDTFVRKYSVwTSKY---WNEIDW--KSKVNDLAVNDVLVERQKHAQIAQSAKCLDCPKFLNHFEMQHDEWTLKE 1077
                      *99966543321123333333333333313333...455555..566*************************99******************* PP

                      HHHHHHHHHH CS
  rRNA_proc-arch  260 eikelkkeis 269 
                      +i +lk+ +s
      KKY22711.1 1078 NIVALKQLMS 1087
                      ******9876 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   8.8e-21   2.2e-17       3     172 ..     328     474 ..     326     477 .. 0.87

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 8.8e-21
                 HHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdiv 101
                  Q+ea+ ++ +g++v+vaa+T +GKT ++  ++  +      k+ +ka++ +P ++L +q ++++++ ++ ++     ++g+v+ + + s        +
  KKY22711.1 328 FQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALA-----AKHMTKAIYTSPIKALSNQKFRDFRNTFDDVG----ILTGDVQINPEASC-------L 410
                 59***************************9999933.....488889***********************644....45677666555555.......5 PP

                 EEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 102 vgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkd 172
                 ++t++ l ++l +g   +++v+f+++DE++ + d +++  +++++  l       + + ++i+lSAT+p++
  KKY22711.1 411 IMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDLERGVVWEEVIIML-------PDHVNLILLSATVPNT 474
                 99999****998888779******************************.......45566********965 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.9e-09   4.7e-06      21     111 .]     659     764 ..     610     764 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1.9e-09
                 EEESSHHHHHH.......HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.......SS..HHHHHHH CS
  Helicase_C  21 ifvntidrlek.......vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.......rn..vtsyiqr 103
                 i+ ++i rl+        ++ l+e  +  vav+hg l    +e +   f k  ++vL at   ++G+++p  ++V++ ++        rn  + +y q+
  KKY22711.1 659 IIQKSIARLKPedrvlpqIRRLRELLSRGVAVHHGGLLPIVKEIVEILFAKTLVKVLFATETFAMGLNLPT-RTVVFSGYRkhdgrefRNllPGEYTQM 756
                 45555556644533433444444445899*****************************************5.555555555466666655667****** PP

                 HTTSSSTT CS
  Helicase_C 104 iGRtgRag 111
                 +GR+gR g
  KKY22711.1 757 AGRAGRRG 764
                 ******75 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.1e-07   0.00027      23     170 ..     338     472 ..     314     473 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.1e-07
                 TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH... CS
      ResIII  23 rdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseee 121
                 +   +++++ T +GKT+va  +i+  +k+    k++   p k+l +q  ++f++++++      ++++gd +++      +++ l++t++ l + +   
  KKY22711.1 338 NGDSVFVAAHTSAGKTVVAEYAIALAAKH--MTKAIYTSPIKALSNQKFRDFRNTFDDV-----GILTGDVQIN-----PEASCLIMTTEILRSML--- 421
                 455678899999*******6666666664..459**********************975.....8999999999.....89999999999999999... PP

                 .....HHHTTT-SEEEEETGGGTTS.T...TTHHHHHT-.--SEEEEEESS-S CS
      ResIII 122 eeeseellrdrfdviiiDEaHrlgakk...swreilekf.keavllglTATpe 170
                   ++   l    +++i+DE+H +++ +    w+e++ ++ ++  l+ l+AT +
  KKY22711.1 422 --YRGADLIRDVEFVIFDEVHYVNDLErgvVWEEVIIMLpDHVNLILLSATVP 472
                 ..77888888888************86788****7666626677888999975 PP

>> GRP  Glycine rich protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  15.1    0.0071        18      30      92 ..     537     601 ..     525     604 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0071
         GRP  30 keeksekeeevkdekyggggkh.ggGgygggggggngGGGykgggGgygggggggeggy..GgGyg 92 
                 ++ k++k++e +  ++ggg    g+Gg +  g++++ GG ++++ G+  + g+g+ ++   GgG+ 
  KKY22711.1 537 DKLKEQKTTEAQASQRGGGTARgGRGGTQQRGQQQQRGGTQRER-GNPTNRGQGNIARSgrGGGRT 601
                 56788888888888887765556899999999998888776555.555554444433332488875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       767  (0.0427799); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.58
# Mc/sec: 6716.68
//
Query:       KKY22712.1  [L=774]
Description: putative c-14 sterol reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (774 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1631  (0.0909699); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.12u 0.41s 00:00:01.53 Elapsed: 00:00:00.63
# Mc/sec: 3725.02
//
Query:       KKY22713.1  [L=279]
Description: hypothetical protein UCRPC4_g03216 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-28   97.9  14.2    4.4e-28   97.3  14.2    1.3  1  Promethin        Promethin
  ------ inclusion threshold ------
      0.055   13.2   0.2      0.083   12.6   0.2    1.2  1  WTF              WTF protein
        3.5    7.1   8.9        4.9    6.6   8.9    1.2  1  Pneumo_att_G     Pneumovirinae attachment membrane glycoprote


Domain annotation for each model (and alignments):
>> Promethin  Promethin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3  14.2   7.3e-32   4.4e-28       3     106 .]      40     151 ..      38     151 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 7.3e-32
   Promethin   3 ldrllppeqreeklkalrafasenPllatflliqlllsllPlllFltfalstllfalvg........allfelfvvgvallvLvpvLfitsflallvwl 93 
                 ldr++ppe+r+e+ ++l++fa+e+P+ a+f+++q+++s+lPl+lF++f++++ +fal+g        a+lf++++ g+al++L+p+Lfit+f a+++wl
  KKY22713.1  40 LDRFFPPERRNEVKAKLMKFATEKPMFASFIFSQIAISGLPLALFAVFTVGVCVFALLGaliiavlgAVLFTVVMAGFALIILLPTLFITTFSAAFIWL 138
                 799************************************************************************************************ PP

   Promethin  94 walasYlvlrrln 106
                 w++++Y++++++n
  KKY22713.1 139 WGVGAYYLVKWFN 151
                 ***********96 PP

>> WTF  WTF protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   1.4e-05     0.083      50     135 ..      31     131 ..      12     148 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.4e-05
         WTF  50 klsnsassel...inPnthrenetsrshdns......spfllkllisvisisv..lnvtavCvlklkdaif....Gkveyslvlgifcavcallfillt 133
                 +l n++ss+l     P+ ++e +++  +  +      s +  ++ is +++ +  ++ + vCv+ l  a+     G+v +++v++ f +++ l  +++t
  KKY22713.1  31 NLVNTGSSYLdrfFPPERRNEVKAKLMKFATekpmfaSFIFSQIAISGLPLALfaVFTVGVCVFALLGALIiavlGAVLFTVVMAGFALIILLPTLFIT 129
                 566777776632245665555444433322221122344445566666655551145556*****9999888899********9999999887666665 PP

         WTF 134 yf 135
                  f
  KKY22713.1 130 TF 131
                 55 PP

>> Pneumo_att_G  Pneumovirinae attachment membrane glycoprotein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   8.9   0.00082       4.9     214     295 ..     174     257 ..     152     276 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00082
  Pneumo_att_G 214 astesvltedtatskssepqleprpsqrG..kstsdkeassttsqdsstrgdskkhtqrrktppatenrrsilstatppettki 295
                   +  + +   d+a +++++p+ +  ++++   +s  +k++   ++++ s ++++k++++r++ p+a++ +r    ++t  e+t  
    KKY22713.1 174 TIQDGINNADNADKQIPPPHEQDASQRKDlpPSQKPKQPQPLNEKKDSANATNKQQQPRNESPSAKNPSRANIAKSTSIEQTGG 257
                   4455677889999999999887777655433899999***********************************999999998843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1464  (0.0816554); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.35s 00:00:00.95 Elapsed: 00:00:00.52
# Mc/sec: 1622.90
//
Query:       KKY22714.1  [L=349]
Description: putative phytanoyldioxygenase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-19   69.6   0.0    6.6e-19   69.0   0.0    1.2  1  PhyH      Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   3.7e-23   6.6e-19       3     207 ..      71     276 ..      69     280 .. 0.78

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 3.7e-23
                 HHSEEEETTSS-HHHHHHHHHHHHHHHHHCHTTCCSEEEEECEEESTTCCCEECCCHHCHHHHTTHHHHHHHHHHHHTSCEEEE.......EEEEEEEE CS
        PhyH   3 edGylviegflsaeevealraeiealldralesgdkidfffeekaaadedglleksinkvghflhprkvadlvrailgqdvyva.......avlqsmyq 94 
                 + G ++++g ls e+++++ ++++ +ld+ l  + ++ ff+  +  +++ gl  ks ++  ++   + ++++++++l +++y++       +   + ++
  KKY22714.1  71 KVGGVIVRGILSTESIDKMEKDMRPHLDADLPWEADNGFFPPST--RRAFGLIGKSGTAALDLIGNELYQAVCDQFLTSKAYKWygnrselNISPPQVN 167
                 67999*********************777666666666665443..34445553443433333333488888888888888877776665544444444 PP

                 E.EEE-TTTCB-E.EEEE-SGGGST.......EES.....GCCEEEEEEESS-B-TTBT-EEEETTGGGS-CCGTCCHHCSGCCTTSCCCTTTGHGSCE CS
        PhyH  95 d.ifkqpkiGgev.qpwHqDstflp.......tdp.....eesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteaeddeakkedeeea 179
                 + i++ +++G++  qp+H+D+  ++       ++p     +e  +g+ +a +  t++nG++rfiPGSH+ + +         + ++e         + a
  KKY22714.1 168 NtIVFSVRPGDSFdQPLHRDDDIHYgnrqrvdQYPeppnsREFGIGFFVAGTRTTKANGATRFIPGSHLEATE---------RPPNE---------ADA 248
                 489*******************99999*999955565888999999************************666.........33444.........77* PP

                 EEE.BTTTEEEEEETTSEEEE-TB.SSS CS
        PhyH 180 vpvevkaGdavlfhgrllHgsgaNrsdk 207
                 v +e+++Gd +++ ++++Hg++ N++++
  KKY22714.1 249 VYAELNPGDGFIMLSSCYHGGSKNTTKD 276
                 **************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       202  (0.0112667); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 2278.62
//
Query:       KKY22715.1  [L=1234]
Description: putative carboxypeptidase y [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-74  250.7   0.0    3.5e-74  250.7   0.0    2.5  3  Peptidase_S10    Serine carboxypeptidase
  ------ inclusion threshold ------
      0.028   14.3   7.5      0.037   13.9   1.8    3.5  3  PKcGMP_CC        Coiled-coil N-terminus of cGMP-dependent pro
      0.054   13.2   0.5       0.14   11.8   0.5    1.7  1  Citrate_ly_lig   Citrate lyase ligase C-terminal domain
       0.67    9.8   3.7        2.3    8.0   0.2    2.8  2  Glutaredoxin2_C  Glutaredoxin 2, C terminal domain


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.7   0.0   7.9e-78   3.5e-74       9     413 ..      43     466 ..      37     471 .. 0.79
   2 ?   -2.5   3.8      0.56   2.5e+03     188     293 ..     690     826 ..     680     869 .. 0.47
   3 ?   -3.3   0.1      0.97   4.4e+03     259     279 ..    1086    1123 ..     979    1148 .. 0.56

  Alignments for each domain:
  == domain 1  score: 250.7 bits;  conditional E-value: 7.9e-78
                    SEEEEEEEECSTTTTEEEEEEEEE-SSGTTTS-EEEEE--TTTB-THHHHHHTTSSEEEETTTTSEEEE-TT-GGGCSEEEEE--STTSTT-EETT CS
  Peptidase_S10   9 fkqysGYldveeeedkslFYwfveseknpeedplvlWLnGGPGCsSldGlleElGPfrvnkdstkkleenpysWnkvanvlfldqPvGvGFSysnt 104
                    ++q +G +dv+  ed+slFYwf+es+++p++dp+vlWLnGGPG sSl Gl++E+GP+rv++d  ++ e+ + sW++ anvlfldqP+GvG S  ++
     KKY22715.1  43 SRQWTGSVDVR--EDRSLFYWFFESRNDPANDPVVLWLNGGPGGSSLYGLFTEVGPCRVTSDA-NTTEYVEPSWTNFANVLFLDQPAGVGMSTVKN 135
                    68999******..99*********************************************875.99999999********************9866 PP

                    SSG.S--SHHHHHHHHHHHHHHHHHH.STCGTTSEEEEEEETTHHHHHHHHHHHHHTHCCH--S..STSEEEEEEEESE-SBHHHHHC.CHHHHHH CS
  Peptidase_S10 105 ksd.vktddeevaedlyefLkkffek.fpeyksrdfyitGESYaGhyvPalakeilkknkkekk..kkinLkGlligNglideaeqvn.syvefay 195
                    +s        ++a d+ +fL  ff+  fp+y ++ f+i+GES++G yvP+ ++ i+ ++k ++    k+ +k++++ +++id   +    +++ + 
     KKY22715.1 136 SSVdLPATRADAAIDFEKFLDTFFTDlFPQYLHSGFHIAGESFGGAYVPTYTDYIIRRQKMRAVdaLKVPIKSIILVDAVIDIMGSGAvGEYDHFC 231
                    6655999999**************988*******************************999876678999************87664413333333 PP

                    HTTSSHHHHHHHHHHHHEETHHHHHHHHHHHHHHHHHHHHH.......................HHHHCHCEETTETTSEETTSSEEHHHCTTCCC CS
  Peptidase_S10 196 ehgliseeeyeslkkacekkeeleqesekcanllekaskva.......................vekenkglnvynileeccklkaelkksstdaq 268
                    + +   +++ + ++++ +  +++++++ +c++l+++   ++                       v+   ++++ y+ +++c           + + 
     KKY22715.1 232 GPDENGSRKPNGFNQTAC--DAMAEDIPECEKLVRNCIDTYdtnicwsavvfcqtnidkwvmgdVM--DGRRDLYDDRKAC-----------EGTP 312
                    333333344444443333..4455666666666666655434334444544433322222211111..2355555555555...........5678 PP

                    CTTTTTCHHHHHHHHTSHHHHHHTT--TTSSS--SB-HHH...HHHCTCCC-SBCHHHHHHHHHTT-EEEEEEETT-STT-HHHHHHHHHHTECTT CS
  Peptidase_S10 269 ggedpydesyvekylnkkeVrkalhvnasvkkweecndsv...feqleddisksveeileellesglrvliynGdvDlicnvlgteawikklelsg 361
                    +++  +++s    yln+++ ++ l+++  + +++  + ++    +++++ + ++v+e+   l e+++r+l+ nG+ D+i+n  g++++ + + ++ 
     KKY22715.1 313 PMCEDFENSTHAVYLNSPHAQNLLGLK--DFNFSGLSWELntlWTENGQATLPTVREMTYLLDETDTRILVLNGNNDIIVNSEGQKRVYNRIPWKK 406
                    999999*******************75..6788888888875566777777777777777777777****************************** PP

                    ECCSCCCEEEE........TTTCESEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHH CS
  Peptidase_S10 362 kkefrpwevsp........kkengqvaGyvkeyenltfltvkgaGHmvPedkpeealqll 413
                    ++ fr  +++         + +    +G +++ ++l+f+t+ +aGH+ P d+pe   + +
     KKY22715.1 407 QAAFRLNQYKDwfwpkegsNGVIRIKGGDMQTTDKLSFVTIDEAGHTSPGDQPEGPSTWF 466
                    ****9999988887765444444456899999999******************9766655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.56
                    CCHHHHHHHTTSSH.HHHHHHHHHHHEET.......................HHHHHHHHHHHHHHHHHHHHH.......HHHHCH..CEETTETT CS
  Peptidase_S10 188 nsyvefayehglis.eeeyeslkkacekk.......................eeleqesekcanllekaskva.......vekenk..glnvynil 250
                    ++ +++a+ h+ i+ e+++++ ++ ce++                                           +       + ++n+  + +  ni+
     KKY22715.1 690 QYKIDMALDHQKIElEKDFDTARNICEQThniqienlkddheaalldlehrlV-------------------QakqaaeaTGDKNQkmKQELANIR 766
                    55566666666666566666666666665554444444333322222222221...................012212221111111133333333 PP

                    SEETTSSEE.................HHHCTTCCCCTTTTTCHHHHHHHHTSHHHHHHTT CS
  Peptidase_S10 251 eeccklkae.................lkksstdaqggedpydesyvekylnkkeVrkalh 293
                    +++  +++e                 l++  ++  +++  ++++++++y + k++  +++
     KKY22715.1 767 RQVKLAEKEkaevleqmvsrekfievLQEDCNRLRSKVFDTENTDTSEYQSGKQIDPSVQ 826
                    333221111333444444444444443333444555555555555555555555544444 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.97
                     E.................HHHCTTCCCCTTTTTCHHHH CS
  Peptidase_S10  259 e.................lkksstdaqggedpydesyv 279 
                     e                 +++ s+++q+++ +++ sy+
     KKY22715.1 1086 EglasiceqlqfaaqqarFERDSYKSQAEQACCNLSYA 1123
                     02222222222223333455555666666666665554 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.089     4e+02      10      23 ..     923     936 ..     920     939 .. 0.90
   2 ?   13.9   1.8   8.2e-06     0.037      11      31 ..    1016    1036 ..    1007    1037 .. 0.91
   3 ?   -1.3   0.2      0.47   2.1e+03       7      20 ..    1065    1078 ..    1064    1080 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.089
   PKcGMP_CC  10 IRELEkrlaekdeE 23 
                 IRE  + +a+kd+ 
  KKY22715.1 923 IREFNDVIADKDAK 936
                 9***********86 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 8.2e-06
   PKcGMP_CC   11 RELEkrlaekdeEIqELrskL 31  
                   E E++l ++deEI+ Lr kL
  KKY22715.1 1016 QEFEDQLDDRDEEIAMLRHKL 1036
                  499*****************9 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.47
   PKcGMP_CC    7 DERIRELEkrlaek 20  
                  + R+ ELE+ l+ k
  KKY22715.1 1065 EKRVNELENLLETK 1078
                  56999999999877 PP

>> Citrate_ly_lig  Citrate lyase ligase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   3.2e-05      0.14      99     164 ..     728     795 ..     707     807 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.2e-05
  Citrate_ly_lig  99 keriakalgitkryvGeeplsevtaaYnqalkevlekae..ievveierkekeeelisaskvrkllke 164
                      ++ a  l++++r v +   +e t   nq++k+ l + +  +++ e e+ e  e+++s  k  ++l+e
      KKY22715.1 728 DDHEAALLDLEHRLVQAKQAAEATGDKNQKMKQELANIRrqVKLAEKEKAEVLEQMVSREKFIEVLQE 795
                     4566889*****************************98844666666666778999998887777765 PP

>> Glutaredoxin2_C  Glutaredoxin 2, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.2   0.00052       2.3      32      88 ..     997    1056 ..     980    1064 .. 0.82
   2 ?    1.3   0.4     0.064   2.8e+02      28      81 ..    1096    1152 ..    1092    1158 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00052
  Glutaredoxin2_C   32 qsAreyftkkkeksig....dfeellaktpeliaelnalLeelepliksseavngelSvdD 88  
                       ++A++ f+++ke+ +     +fe+ l++++e ia l ++L+e e +++ +++++ el+  D
       KKY22715.1  997 EKAQSSFQSRKERIVThirqEFEDQLDDRDEEIAMLRHKLAEAERVVD-TTKLQVELTRID 1056
                       78999*******988766679***********************9995.555555665555 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.064
  Glutaredoxin2_C   28 EFatqsA...reyftkkkeksigdfeellaktpeliaelnalLeelepliksseavn 81  
                       +Fa q+A   r+ ++++ e++  +++ +  ++++++  + +++e ++  + ++++++
       KKY22715.1 1096 QFAAQQArfeRDSYKSQAEQACCNLSYATLEHNQYVGSMAQDMESVALYLSERNRLK 1152
                       5777777333589999******************************99998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1778  (0.0991689); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.13u 0.33s 00:00:01.46 Elapsed: 00:00:00.52
# Mc/sec: 7129.46
//
Query:       KKY22716.1  [L=131]
Description: putative 4-oxalocrotonate tautomerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-25   88.5   0.0    3.1e-25   88.1   0.0    1.2  1  Tautomerase_2  Tautomerase enzyme
     0.0003   20.6   0.0     0.0019   18.1   0.0    1.9  2  Tautomerase    Tautomerase enzyme


Domain annotation for each model (and alignments):
>> Tautomerase_2  Tautomerase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.0   3.4e-29   3.1e-25       1      82 []      39     120 ..      39     120 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 3.4e-29
                    --EEEEEEE-GGGEE--T......TS-TT-EEEEEEEES---HHHHHHHHHHHHHHHHHHH---GGGEEEEEEEE-GGGEEET CS
  Tautomerase_2   1 drfqiitehepeelviddtylg.ieRsddlvvieitlsegRseeqKkaLyralaerlaaklgirpeDvfivlvenpkedWSfg 82 
                    dr+qiit+hep e++++dt+l+  +R ++l++i+i+ + gR++e K++ y++l+++l+ ++gi p D++i++  n+kedWSfg
     KKY22716.1  39 DRYQIITQHEPYEMICEDTGLQgLPRGEKLIFIQIFQQ-GRTREIKEKTYAELFDKLKGAVGIGPGDLIISVAANTKEDWSFG 120
                    9******************99779*************9.*******************************************8 PP

>> Tautomerase  Tautomerase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.1e-07    0.0019       1      57 [.       2      59 ..       2      61 .. 0.96
   2 ?    0.5   0.0     0.066   5.9e+02       4      18 ..      70      85 ..      68     120 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.1e-07
                 -EEEEEESTCS.-HHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEEE-TTSEEETTEEH CS
  Tautomerase  1 PfvnIklvegr.saeqKaeLaervTealvealgaprsaivVvieEvpaenwgvggesv 57
                 P+v+I+l+    ++   + +a+ v +++   ++ap+ + +++i ++++  ++ +++++
   KKY22716.1  2 PLVKIDLIRNAyTPTEIRHIADTVQNVMLACFNAPPRDRYQIITQHEPYEMICEDTGL 59
                 9**************************************************9999875 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.066
                 EEEES.TCS-HHHHHH CS
  Tautomerase  4 nIklv.egrsaeqKae 18
                  I+++ +gr++e K++
   KKY22716.1 70 FIQIFqQGRTREIKEK 85
                 5788855669999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.54
# Mc/sec: 729.90
//
Query:       KKY22717.1  [L=267]
Description: hypothetical protein UCRPC4_g03220 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 1666.48
//
Query:       KKY22718.1  [L=616]
Description: putative amino acid permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   9.5e-146  486.1  38.6   1.2e-145  485.8  38.6    1.0  1  AA_permease    Amino acid permease
    4.7e-33  114.6  39.5    6.6e-33  114.2  39.5    1.1  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  485.8  38.6  1.3e-149  1.2e-145       1     475 [.     105     571 ..     105     574 .. 0.98

  Alignments for each domain:
  == domain 1  score: 485.8 bits;  conditional E-value: 1.3e-149
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++i  gg+iGtglfvg+g+ l+q+Gp++++lay l+gv++++++ +lge+ + +p +g+f+ +a rfl+p+++f++G+ny ++w+++l+le++aas
   KKY22718.1 105 HLQMIGFGGAIGTGLFVGSGSSLAQGGPASLVLAYGLIGVMLYCTVHALGELGVQYPIAGSFAIFANRFLDPAWAFAMGWNYALQWLITLPLEIIAAS 202
                  99************************************************************************************************ PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeee 195
                   ++++w    d++   +++++flv+++i+nl+gvk+ygeaef+++++k+ a+i+fii+giil++gg+pn  + g+++++++g+     + +g      
   KKY22718.1 203 LTLSYWPAAADIN-PAAWVTIFLVFIVILNLFGVKGYGEAEFVFSIVKVTAVIGFIILGIILNVGGGPNGSYiGGKYWQNPGA-----FHNG------ 288
                  ******99*****.*********************************************************************.....999*...... PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa...aspfvifikesgvsvlap 290
                    fk+ +svfv+++faf+G+elv+++a+E+ +P+ks+P a++q+++ri++fYv slll+gllvp+nd+ l+n++ s+   aspfvi i+++g+ vl++
   KKY22718.1 289 --FKGLCSVFVTAAFAFSGTELVGLAAAESVNPRKSLPTAVKQIFWRIVLFYVVSLLLVGLLVPYNDPRLINSTSSVdakASPFVISIENAGIEVLPS 384
                  ..************************************************************************999********************* PP

  AA_permease 291 linaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsyl 388
                  ++n+vil+++ls++n s+y++sR+l ++a++g aP++l++v+++g+Pl +ill+++++ll++++a+ +   ++vfn+l+ais+l+++i+w  i+l+++
   KKY22718.1 385 VFNVVILISVLSVGNTSVYATSRTLAAMADRGQAPRILGYVDRSGRPLTSILLTSAFGLLCYFAAAGSNTRTQVFNWLIAISGLSTIITWATICLCHI 482
                  ***************************************************************99988888*************************** PP

  AA_permease 389 rfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyay..ltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkrp 475
                  rfR a++ qg+ +++l fk++ +  g++++l+++i++l++++++a   l +  +  + +a+sf++ayl ++++li+++++k+ +k+k++
   KKY22718.1 483 RFRSAWHRQGHTLDSLAFKSQAGLVGSWIGLIFNILVLIAQFWTAAwpLGYESMSPSARAESFFEAYLAAPVTLIMYIIWKVVFKTKIR 571
                  ********************************************99667788899999****************************987 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.2  39.5   7.4e-37   6.6e-33       8     405 ..     108     526 ..     103     546 .. 0.84

  Alignments for each domain:
  == domain 1  score: 114.2 bits;  conditional E-value: 7.4e-37
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaas 101
                    ++ +g +ig+g fv +  ++a ggpa+++   + +++++++ + ++ El+   p  g    ++ ++  + +af ++w ++++++++l++ +++a  
     KKY22718.1 108 MIGFGGAIGTGLFVGSgsSLAQGGPASLVLAYGLIGVMLYCTVHALGELGVQYPIAGSFAIFANRFLDPAWAFAMGWNYALQWLITLPLEIIAASL 203
                    67899**********9999999****777777666666689********988*************************************9999999 PP

  AA_permease_2 102 yllna.lgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl...stetdt..ffpngwpgvl 191
                    +l ++ ++ d+++  w t++     l++++++n++g+k+++ + ++  i+k++  +i +iilg+i+  ggg + +      + +   f ng +g  
     KKY22718.1 204 TLSYWpAAADINPAAWVTIF-----LVFIVILNLFGVKGYGEAEFVFSIVKVT-AVIGFIILGIILNVGGGPNGSyigGKYWQNpgAFHNGFKGLC 293
                    99997333588887777766.....9999***********************5.7788888*****999888877655333333446667888899 PP

  AA_permease_2 192 lgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddei......anlsnlgsvaalffeavggkvvaiivvil 279
                    +++ +++++f+G e +   + e  +++k +p a   ++  ++++y++  +++   vp +        ++++   s++ +  e++g  v+ ++++++
     KKY22718.1 294 SVFVTAAFAFSGTELVGLAAAEsvNPRKSLPTAVKQIFWRIVLFYVVSLLLVGLLVPYNDPrlinstSSVDAKASPFVISIENAGIEVLPSVFNVV 389
                    9*********************8777799*****99999999999999999999999988745555444444555699999999*99********* PP

  AA_permease_2 280 ialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas..saaynfllsvsslgliisyllliigalilr 373
                    i +s+l  +nt v+++sr+l a+a  g  Pr +  v++ g+p+ +i lt  + l+++++ ++++  +  +n+l ++s l+ ii ++ + ++ +  r
     KKY22718.1 390 ILISVLSVGNTSVYATSRTLAAMADRGQAPRILGYVDRSGRPLTSILLTSAFGLLCYFAAAGSNtrTQVFNWLIAISGLSTIITWATICLCHIRFR 485
                    *****************************************************999988888779999*************999999988887777 PP

  AA_permease_2 374 kkrphlkr......pgk...ilvaiigalfllfllvalffp 405
                       ++++       ++     + ++ig++f++++l+a f+ 
     KKY22718.1 486 SAWHRQGHtldslaFKSqagLVGSWIGLIFNILVLIAQFWT 526
                    66444433567766332555567778888888888887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.51
# Mc/sec: 3645.18
//
Query:       KKY22749.1  [L=88]
Description: hypothetical protein UCRPC4_g03074 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.30s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 582.12
//
Query:       KKY22750.1  [L=971]
Description: putative isocitrate lyase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.3e-184  613.7   0.0   3.2e-184  613.3   0.0    1.2  1  ICL            Isocitrate lyase family
    0.00066   19.5   4.9     0.0014   18.5   4.9    1.6  1  PHD            PHD-finger
     0.0013   19.7   0.0     0.0029   18.5   0.0    1.6  1  AMP-binding_C  AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
      0.093   12.8   0.0       0.26   11.4   0.0    1.7  2  DUF2251        Uncharacterized protein conserved in bacteria 
        2.3    7.9   4.5          9    5.9   0.1    3.2  3  DUF2458        Protein of unknown function (DUF2458)


Domain annotation for each model (and alignments):
>> ICL  Isocitrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  613.3   0.0  8.9e-188  3.2e-184       3     524 ..      48     564 ..      46     566 .. 0.98

  Alignments for each domain:
  == domain 1  score: 613.3 bits;  conditional E-value: 8.9e-188
                 HXHHHHHTSGGGGG---SS-HHHHHHH--SS----THHHHHHHHHHHHHHHHHHT--EEEEB--SHHHHHHHHHH-S-EEE-HHHHHHH--TT----SS CS
         ICL   3 aevkkwwsdsrwrktkrvysaedivskrGnlkieyasseqakklfklleeheaektasktfGaldpvqvtqmakyldtiyvsGwqssstastsnepspd 101
                 ++ k+ww  +r++  kr+y+aed+vskrG+l+i+y+ss +a+klf ll+e+ a +   +t Ga+dpvq+tq a   + +y+sGw +sst +t+ne spd
  KKY22750.1  48 EDTKEWWAGPRFEGIKRPYTAEDVVSKRGSLQISYPSSIMARKLFDLLNERAAAGLPVHTMGAIDPVQMTQQAPNQEVLYISGWACSSTLTTTNEVSPD 146
                 6889*********************************************************************************************** PP

                 -S-S-TTHHHHHHHHHHHHHHHHHHHHHHHHHSS-HHHHTTS--------EEEE-TT-SSSHHHHHHHHHHHHHTT-SEEEE-SB-TT---------EE CS
         ICL 102 ladypmdtvpnkvehlflaqlfhdrkqkeerlkvkkeereklanvdylrpiiadadtGhGGltavvkltklfierGaaGihiedqasgtkkcGhmaGkv 200
                 + dyp++tvpn+v+ lf+aq+ hdrk  ++r k+++eer+++++vdy+rpiiad+dtGhGGl+av+kl+klf e+Gaa +h edq  g kkcGh+aGkv
  KKY22750.1 147 FGDYPYNTVPNQVDRLFKAQKLHDRKAWDARRKLTSEERKNTPYVDYMRPIIADGDTGHGGLSAVLKLAKLFAENGAAAVHFEDQLHGGKKCGHLAGKV 245
                 *************************************************************************************************** PP

                 E--HHHHHHHHHHHHHHHHHTT---EEEEE--GGGEEEES-TT-GGGGGGEEEE--TTS--HHHHHHHHHHS---SHHHHHHHHHHHHHS-EE-SHHHH CS
         ICL 201 lvpiqehinrlvairaqadilgsdllvvartdseaatlitstidtrdhafilGatnpdleeladllveaeaeGksGaelqaiedewlkkaglklfeeav 299
                 lvp+ ehinrlva+r q d++g++ lv+artdse+ +l++s+id rdh+filG + +d+e+la+ +++ e++G+sG e+++ e  w+kk +l +f+ea 
  KKY22750.1 246 LVPVGEHINRLVAARFQWDMMGTENLVIARTDSESGKLLSSAIDVRDHEFILGIA-DDVEPLAEQIQAMELDGASGPEIDQFESAWVKKYQLVTFDEAA 343
                 *****************************************************87.69****************************************8 PP

                 HHHHHTSS-S-HHHHHHHHHHHHTT--HH...HHHHHHHHHHSS----BTTSS--TT--EEE--SHHHHHHHHHHHTTS-SEEE---SS--HHHHHHHH CS
         ICL 300 vdeieksklsnkkelikkftkkvkplselsnkearklakellgkdiffdwelprvreGyyrykGgtqcsvvravafapyadliwmesklpdyaqakefa 398
                   +++ + ++      +++ +++++ +++s    ++la++ + + + +  ++pr+reG+y y+ g+ ++ +ra+ f pyadl+w+e+ +  ++ a +fa
  KKY22750.1 344 EAHLKSQGIDP-----SDYLSRTSKDRNMSLSRRKALAAKYSKTPVIWSCDSPRTREGFYHYRAGIPAATKRAIEFGPYADLLWLETGTASVEMAAKFA 437
                 87777776654.....5799999999************************************************************************* PP

                 HHHHTT-TT-EEEEE--SSS-GGGTS-HHH.HHSHHHHHHHTTEEEEEETTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTHHHHHHHT-GGGSHHHHHT CS
         ICL 399 eGvkakvpeqklaynlspsfnwkkamsade.qetyikrlaklGyvwqfitlaGlhtnalisdkfakdyakrGmkaygeevqeeeidnGvdvvkhqkwsG 496
                   ++a  p +kl ynlspsfnw + +  d   + +i  lak G+v q+i+laGlh++a i++++++ + ++Gm ay++ vq++e + Gvdv++hq wsG
  KKY22750.1 438 GDIRAELPGKKLVYNLSPSFNWAAQGYDDAaLKAFIWDLAKHGFVLQLISLAGLHSTATITQELSRGFKDDGMLAYVNLVQKREKELGVDVLTHQNWSG 536
                 **********************9999988778******************************************************************* PP

                 HHHHHHHHHHHH--XXXXXXXXXXXXXX CS
         ICL 497 aeyidellklvtGGvsstaamGkGvted 524
                 a y+d+++  ++ G s + +mG+G te+
  KKY22750.1 537 ASYMDGIIGAIQSGSSGSRSMGEGNTEK 564
                 **************************96 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   4.9   3.8e-07    0.0014       1      51 [.     682     732 ..     682     733 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.8e-07
                 SBTTTTSTTSTTSCEEEE...TTT.SCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   1 rCavCkkksdeeeelvqC...dgC.krwfHqkClkppleseekpegewlCekCke 51 
                 +C +C++  +++++++ C   + C  + fH +C++++ +  ++ +++w+C++C+e
  KKY22750.1 682 IC-LCRE-PKAGRRTIRCsigEFClTKEFHLDCIGLERR--PHRSESWTCPECSE 732
                 59.****.99********5544695578*********98..666678******85 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   8.1e-07    0.0029       1      66 [.     823     891 ..     823     899 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 8.1e-07
                    HHHHHHHSSTTEEEEEEE-----.TTS---EEEEEE------..HHHHHHHHHHHHT-TTTS-SEEEE- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpde.vkGealvafVvlkdgsea..leeeLkahvrkelgpyavpkkvvfv 66 
                    ev ++l    +V ea V+Gv  +  +G+a +a  v ++  +a    ++L ++ r++l++ya+p  ++++
     KKY22750.1 823 EVAEVLGGYSGVTEAIVYGVLVPnHDGRAGCAALVIDPAAKAtfDFDALYKYTRSKLPSYAAPVFLRLI 891
                    788999**************99999****99999984332224667*****************887765 PP

>> DUF2251  Uncharacterized protein conserved in bacteria (DUF2251)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         4   1.4e+04      14      32 ..     505     523 ..     498     530 .. 0.73
   2 ?   11.4   0.0   7.3e-05      0.26      66      93 ..     853     880 ..     846     881 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4
     DUF2251  14 FeddgetGYfYaldkeqee 32 
                 F+ddg   Y   ++k+++e
  KKY22750.1 505 FKDDGMLAYVNLVQKREKE 523
                 9999999999888877643 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 7.3e-05
     DUF2251  66 kaaLlingyahAvfDFeelvgycrtkfp 93 
                  aaL+i+  a+A+fDF++l  y+r+k p
  KKY22750.1 853 CAALVIDPAAKATFDFDALYKYTRSKLP 880
                 589**********************988 PP

>> DUF2458  Protein of unknown function (DUF2458)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.4       0.3   1.1e+03      31      46 ..      41      56 ..      37      60 .. 0.89
   2 ?    5.9   0.1    0.0025         9      26      55 ..     156     185 ..     152     191 .. 0.87
   3 ?    1.2   0.0     0.069   2.5e+02      19      65 ..     753     798 ..     746     831 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.3
     DUF2458 31 kliksqheherqWwkg 46
                +l ++q e  ++Ww+g
  KKY22750.1 41 ELYQKQTEDTKEWWAG 56
                5889**********97 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0025
     DUF2458  26 qrkirkliksqheherqWwkgReaLikkqk 55 
                  +++ +l k q+ h+r+ w++R++L ++++
  KKY22750.1 156 PNQVDRLFKAQKLHDRKAWDARRKLTSEER 185
                 57899********************98765 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.069
     DUF2458  19 vaqneelqrkirkliksqheherqWwkgReaLikkqkareekkkkld 65 
                 +++ ++l++ +++l  +  +   +W  +R +L++++  r+   +++d
  KKY22750.1 753 LSTINHLTEVMKELEAENIRGKDKWNVARDRLLTRNIDRDAL-RRTD 798
                 55566777788889999999999***********99999655.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (971 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.26s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 6783.72
//
Query:       KKY22751.1  [L=469]
Description: putative 2-methylcitrate synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-94  317.5   0.0    1.3e-94  317.3   0.0    1.1  1  Citrate_synt  Citrate synthase, C-terminal domain


Domain annotation for each model (and alignments):
>> Citrate_synt  Citrate synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.3   0.0   7.2e-99   1.3e-94       1     361 []      77     457 ..      77     457 .. 0.93

  Alignments for each domain:
  == domain 1  score: 317.3 bits;  conditional E-value: 7.2e-99
                   GGTTEEEEEESSEEEETTTTE.EEETTEEHHHHH.........HHHS-HHHHHHHHHHSS---HHHHHHHHHHHHCTTS--HHHHHHHHCSSTTS-H CS
  Citrate_synt   1 glrgvaaleteisevdgekge.lrYRGydieeLa.........eekssfeevaylLltgelPtkeelkefkeelaearklpekvlealealpkdahp 87 
                   g+r ++++ +e s +d ++ e +r++G +i++ +         + +   e +++lLltg++P+ ++++++++elae++klp +v+++l+a+ ++ hp
    KKY22751.1  77 GMRTLKSMVWEGSVLD-AN-EgIRFHGKTIQD-CqrelpkgtsGTEMLPEAMFWLLLTGQVPSVNQVRALSRELAEKSKLPASVVSMLKAFDSSVHP 170
                   7889999********8.33.35**********.77*****998556778889999****************************************** PP

                   HHHHHHHHHHHHHHSTT......CTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS.-----TTSSHHHHHHHHHHS.S---HHHHHHHHHHHH CS
  Citrate_synt  88 mavlraavsalsaddee......seakeeseeaalrdalkliAklptiaaaiyrarlgreplepddklsyaenflymlrg.kkpdeeeaklldlalv 177
                   m++l+ av+al+++++       + +k+++++ +++d+++l+Aklp +aa+i   + ++++++pd  ++++ nf+++l +  k +e + +ll+l+l 
    KKY22751.1 171 MTQLACAVAALNTESQFakayakGLNKADYWDLTYEDSISLLAKLPRVAATIFDKSAADQEIDPD--QDWSYNFAKLLGKgGKENEGFQDLLRLYLA 265
                   **********8888777766665777777*****************************9999999..7**********6347889************ PP

                   HHS--SS.SHHHHHHHHHHTTT--HHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHSSGG........GHHHHHHHHHHTTTS--TTBC-SSSSS--H CS
  Citrate_synt 178 lhaDHel.naSTfaarvvaStladlysaiaagigalkGplhgganeavlkmleeigsaev.......eveeylekvlakekerlpGfGHrvykksDp 266
                   lh DHe+ n+S++a+++v+S+l+d++ +++ag+ +l+Gplhg a ++vl+++ e+ ++++       +ve+yl+++l+++ +++pG+GH v++k Dp
    KKY22751.1 266 LHGDHEGgNVSAHATHLVGSALSDPFLSYSAGLLGLAGPLHGLAAQEVLRWILEM-KDHIgerftdkDVEDYLWTTLKSG-RVVPGYGHGVLRKPDP 360
                   *******************************************************.66678999999***********96.**************** PP

                   HHHHHHHHHHHHHTCHTHHHHHHHHHHHHHHHHHHHHCHH.GCT-EB-THHHHHHHHHHTT--GGG.HHHHHHHHHHHHHHHHHHHHH.HT------ CS
  Citrate_synt 267 Rakilkelaeelaeekgkdpllklaeeleevapevlkeke.eknlypNvDfysgvlyralgipeel.ftvlfaisRvaGwlAhileql.adnkiiRP 360
                   R+k+l ++a+   +   +dp ++l+++ +e+ap+vl+e+  +kn++pNvD +sgvl++++g+ ++l +tv f++sR +G lA++++ +     i+RP
    KKY22751.1 361 RFKALIDFADARPD-IAEDPVYRLVKKNSEIAPSVLTEHGkTKNPHPNVDSASGVLFHHYGFRDPLyYTVTFGVSRGLGPLAQLIWDRaLGLPIERP 456
                   *********99877.69999*****************9999************************88*******************87455669**9 PP

                   E CS
  Citrate_synt 361 r 361
                   +
    KKY22751.1 457 K 457
                   6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3524.81
//
Query:       KKY22752.1  [L=757]
Description: putative glycosyltransferase family 2 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-51  172.6   6.3    1.6e-50  171.8   5.8    1.9  1  Glyco_trans_2_3  Glycosyl transferase family group 2
    6.8e-06   26.0   0.0      4e-05   23.5   0.0    2.2  2  Glycos_transf_2  Glycosyl transferase family 2
     0.0068   15.9   0.0      0.012   15.1   0.0    1.4  1  Glyco_transf_21  Glycosyl transferase family 21
  ------ inclusion threshold ------
      0.035   14.0   0.0       0.08   12.8   0.0    1.5  1  Glyco_tranf_2_3  Glycosyltransferase like family 2


Domain annotation for each model (and alignments):
>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.8   5.8   3.5e-54   1.6e-50       1     189 [.     374     580 ..     374     712 .. 0.89

  Alignments for each domain:
  == domain 1  score: 171.8 bits;  conditional E-value: 3.5e-54
  Glyco_trans_2_3   1 iilllDaDtvlppdclreiaaela.spevaivqgpvlvmnvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalqevg..... 88 
                      +ill+D+Dt++p+dcl+++++e++ sp+v+i+q+ ++vm+v + + e  ++ff++ ++ +i  ++a+g+v+p+vG++a+lr+sa+q+v+     
       KKY22752.1 374 YILLIDSDTRVPADCLLDAVSEMEqSPNVGIMQFSSGVMQVVHTYFESGITFFTNLIYTAIKYTVANGDVAPFVGHNAVLRWSAIQQVSyqded 467
                      79**********************66*************76555555555677789************************************** PP

  Glyco_trans_2_3  89 ....gwdgdessvsEDfdmglrlqrkGyrvrfvpes..lvkekspltlraalrQrkRwayGc.el..eklillvrll...gylgsllwsalplh 170
                          +w+  es+vsEDfdm+lrlq  Gy++r+++ +  ++ke+++lt++++l++++++ayGc el  +++++++ +     +++++l+s++ + 
       KKY22752.1 468 gyekFWS--ESHVSEDFDMSLRLQCDGYIIRLASWAgeGFKEGVSLTVYDELARWEKYAYGCnELlfHPMRQWIYRGpftELFRRFLFSNIRFT 559
                      *******..************************99999************************73367555555544433567899999999999 PP

  Glyco_trans_2_3 171 lallllfslla........lalvllll 189
                        +++++++          +      +
       KKY22752.1 560 SKITIISYIGTyyaigaawI------M 580
                      99999999744233443222......2 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.36   1.6e+03       5      23 ..     232     252 ..     228     271 .. 0.83
   2 !   23.5   0.0   8.9e-09     4e-05      80     168 ..     372     460 ..     360     462 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.36
                      EESS-..TTTHHHHHHHHHHH CS
  Glycos_transf_2   5 ptyNe..ektlletlesllaq 23 
                      p+y e  ++ ++ t++s+++ 
       KKY22752.1 232 PVYKEglASVIAPTVKSIKQA 252
                      99***************9987 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 8.9e-09
                      SSEEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHH CS
  Glycos_transf_2  80 gdyilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrrealee 168
                      gdyil++D+D+ ++ d+l + v ++e+ ++ ++++      +  +++     +++ + +y+ ++    +g+++ ++g++a+lr +a+++
       KKY22752.1 372 GDYILLIDSDTRVPADCLLDAVSEMEQSPNVGIMQFSSGVMQVVHTYFESGITFFTNLIYTAIKYTVANGDVAPFVGHNAVLRWSAIQQ 460
                      89*************************99999999999999999999998888******************************999876 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.7e-06     0.012      32     146 ..     373     498 ..     364     522 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.7e-06
  Glyco_transf_21  32 dllvisDsdvrvkpdyLeellaaled.pkvglVtslpvgsdakglaaaleaafl.ntlagvlqa..klsglgfavGksmalrreaLeaiG.... 117
                      d++++ Dsd+rv++d L + + ++e+ p+vg+ +  + +++  + + +    f+ n  + ++++  + + +   vG   +lr +a+++++    
       KKY22752.1 373 DYILLIDSDTRVPADCLLDAVSEMEQsPNVGIMQFSSGVMQVVHTYFESGITFFtNLIYTAIKYtvANGDVAPFVGHNAVLRWSAIQQVSyqde 466
                      89*****************99999998******999999999999988888888444444444433347889999*999999999999864444 PP

  Glyco_transf_21 118 .Gfeal..adeLAeDyalgkllraaGlkvvls 146
                       G+e++    ++ eD+ ++ +l+  G+ ++l+
       KKY22752.1 467 dGYEKFwsESHVSEDFDMSLRLQCDGYIIRLA 498
                      46666633456677777777776666666665 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.8e-05      0.08      87     196 ..     370     490 ..     346     499 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.8e-05
  Glyco_tranf_2_3  87 k.sdlvllvDdDtvv.ePdtlkrllqffltpkvgavgtpvfllnrstlvsalgalefaer.hlrflaarralgvltlnGsgslirrevlkele. 176
                      + +d++ll+D+Dt+v  +++l+++    ++p+vg+++ +  +++  ++   +g ++f+   ++ +  +   ++v+++ G   + r +  ++   
       KKY22752.1 370 RvGDYILLIDSDTRVpADCLLDAVSEMEQSPNVGIMQFSSGVMQVVHTYFESGITFFTNLiYTAIKYTVANGDVAPFVGHNAVLRWSAIQQVSy 463
                      3589***********6777777766666*********888887755443334444333330333333346666899999999999999999888 PP

  Glyco_tranf_2_3 177 ........gldplflltdDyelglrlrr 196
                               + + +++ +D++++lrl  
       KKY22752.1 464 qdedgyekFWSE-SHVSEDFDMSLRLQC 490
                      888877633444.888999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.50
# Mc/sec: 4567.43
//
Query:       KKY22753.1  [L=466]
Description: putative beta-glucan-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-17   61.7   0.8      1e-16   61.0   0.8    1.4  1  Glyco_hydro_16  Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.8   5.6e-21     1e-16      28     139 ..     219     359 ..     163     392 .. 0.79

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 5.6e-21
                     E.......EEEEEEEE..CCEESSEEEEEEEE---STTEEEEEEE...ETGG...TSTTEEEEE.EEETT-TTE.......EEEEEEBTTBSGE. CS
  Glyco_hydro_16  28 k.......esgsriks..kksflyGkvearikaaksaGvvtafyl...ssed...ekahdEiDi.EflGndtgk.......vqtnvygkGkgkr. 98 
                              +++ri++    +++yG+ve++++++ ++ +++a+++    +     +++++EiDi E  Gn+ +        v++++++  ++++ 
      KKY22753.1 219 TngtivnpVKSGRINTkkGATIKYGRVEVEARLPAGDWLWPAIWMlpvKN-AygdWPESGEIDIaESRGNNHTYsqggdniVSSALHWGPNSANd 312
                     04444445679*****5446899**********************76433.1356***************98888999*********76666644 PP

                     ......EEEEETSS-TTTS-EEEEEEEETTEEEEEETTEEEEEEESS CS
  Glyco_hydro_16  99 ......ekrlslwfdptedfHtYaieWtpdkikfyVDgkpvrtltkk 139
                            kr  l +  +e+fHt+++eW+++++  y+D+++ ++l+ +
      KKY22753.1 313 awwrtnVKRKALHSTYAEKFHTFGLEWSEKYLFTYIDNRLLQVLYVN 359
                     566566667777999************************99988755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.53
# Mc/sec: 2657.23
//
Query:       KKY22754.1  [L=146]
Description: hypothetical protein UCRPC4_g03079 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-35  120.1   0.0    7.6e-35  119.9   0.0    1.0  1  DUF3237   Protein of unknown function (DUF3237)


Domain annotation for each model (and alignments):
>> DUF3237  Protein of unknown function (DUF3237)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.9   0.0   4.2e-39   7.6e-35       9     149 .]       1     145 [.       1     145 [. 0.95

  Alignments for each domain:
  == domain 1  score: 119.9 bits;  conditional E-value: 4.2e-39
                 EEEEE---EEEEEET.EEEEEEEEEEEEEESTT--EEE-ST-EEEEEE-TTS-EEEEEEEEEEETT..S-EEEEEEEEEEE--GGGHHHHHH..T-..- CS
     DUF3237   9 levkleapvpigegp.gkrnivpitgGtikgprldgevlpgGaDwiridpggtarldaryvlktdd..galiyirytGvvtldeevlavlgg..gekke 102
                 ++vkl+++ ++g++  g  ++++++gG++ g++ +g v+pgG+D + i ++g +++d++y+l+t d  +a i+++++G++t++++vl++l++  + +++
  KKY22754.1   1 MSVKLNPALSLGPTLfGPKRWISFVGGQWAGRWGKGIVIPGGQDAQWIVKDGATKVDTNYLLQTADepPAFIQVKTSGWRTGSRDVLEKLENlaT-ADT 98 
                 57999999*****999************************************************88778***********************843.456 PP

                 --GGG-EEEEEEEEEESSGGGGGGGSS-EEEEEEEESSEEEEEEEEE CS
     DUF3237 103 sspteygfrthptfetgdekykwLnnavfvGsgrfrvegveykvyev 149
                  +p+ y+fr  +++etgde+y  +n +++vGsg +r+++v+y++y+v
  KKY22754.1  99 VNPNTYKFRIYIQLETGDERYGFVNSTMWVGSGCRRGGEVIYDAYKV 145
                 779******************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.48
# Mc/sec: 914.58
//
Query:       KKY22755.1  [L=280]
Description: putative short-chain dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-61  205.3   0.0    1.1e-60  205.1   0.0    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
      4e-42  143.9   0.0    4.9e-42  143.6   0.0    1.1  1  adh_short        short chain dehydrogenase
    5.5e-09   36.2   0.5    7.8e-09   35.7   0.5    1.2  1  KR               KR domain
    0.00024   21.0   0.0    0.00046   20.1   0.0    1.4  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
  ------ inclusion threshold ------
       0.02   15.6   0.0      0.042   14.6   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
      0.044   13.1   0.0      0.098   12.0   0.0    1.6  1  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.1   0.0   3.7e-64   1.1e-60       1     234 []      18     261 ..      18     261 .. 0.93

  Alignments for each domain:
  == domain 1  score: 205.1 bits;  conditional E-value: 3.7e-64
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE..E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-H CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae..v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsr 92 
                   Gaa gIG ++  ++a+eGa+v++td++e a +k++++++e ++ +  +  l+cDV++e++++++ve++ +++g++Di++nnagi+++ ++++++t++
    KKY22755.1  18 GAAGGIGLETTILFAREGASVLMTDVSEPAlEKAIAKVKELVPFAprLdtLKCDVSKEADIATAVEKL-DSWGGVDIMFNNAGIMHADDADAIDTPE 113
                   9*****************************9********99994435466*****************7.579***************9********* PP

                   HHHHHHHHHHTHHHHHHHHHHHHHCTSC....CEEEEEEEGGGTSBSTTTT.HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGG.ST CS
  adh_short_C2  93 eefdraldvnlyslfllakaalplmkeg....gsivnlssvgaervvpnyn.aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasg.ik 183
                   + +d ++++n+++++  +k+a+  m+++    gs++n++s+ a ++ +  + ay+a+K+a+ a+tr lA+  +++g R N+ +pgp++T++ ++ + 
    KKY22755.1 114 KIWDLTQAINVKGVWFGSKHAVLSMRKHgkksGSVINTASFVALMGAATPQlAYTASKGAVLAMTRELAMVHAKEGFRFNSLCPGPLNTPLLQEwLG 210
                   **********************9776655899**************999999***************************************666155 PP

                   THHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 184 gfdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                   + +e +++ e + p gr+g++ e a+a+lfLasde+s+++G+++vvDgGl+
    KKY22755.1 211 DDQEKRHRREVHFPSGRFGEAIEQAQAVLFLASDESSFVNGTDFVVDGGLS 261
                   577888899999*************************************86 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.6   0.0   1.6e-45   4.9e-42       1     190 [.      12     208 ..      12     213 .. 0.94

  Alignments for each domain:
  == domain 1  score: 143.6 bits;  conditional E-value: 1.6e-45
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT...TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S..S--SSGG CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee...gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi..tgsgpfs 94 
                 k +++tGa++GIG+++   +a+eGa+v+++d se +le++++++ke+   + ++ ++++Dv++++++ ++vek  + +g++d++ nNAGi  + ++++ 
  KKY22755.1  12 KNAVITGAAGGIGLETTILFAREGASVLMTDVSEPALEKAIAKVKELvpfAPRLDTLKCDVSKEADIATAVEKL-DSWGGVDIMFNNAGImhADDADAI 109
                 789*********************************************9999*********************9.99*************655556666 PP

                 GCSHHHHHHHHHHHTHHHHHHHHHHHHHHH..HCTTEEEEEEEEGGGTSB-TT.BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short  95 elseeewervievNltgvflltravlpaml..kqssGrIvnvsSvagkvpvag.vaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                 ++ e+ w+ + ++N++gv   +++++  m    ++sG+++n++S +++++ a  + aY+AsK+av ++tr+la+ +a++g r n+++PG+++T++ +e+
  KKY22755.1 110 DTPEKIWDLTQAINVKGVWFGSKHAVLSMRkhGKKSGSVINTASFVALMGAATpQLAYTASKGAVLAMTRELAMVHAKEGFRFNSLCPGPLNTPLLQEW 208
                 666666***********************988899************999876488**************************************99876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.5   2.6e-12   7.8e-09       4     152 ..      15     170 ..      13     187 .. 0.77

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 2.6e-12
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--. CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt. 101
                 +itG++Gg+Gle++   a++ga+ l+    + +a e++ a+++el     + +++++Dvs+++++++++e+++ + + +   ++ Ag+++ +  +  + 
  KKY22755.1  15 VITGAAGGIGLETTILFAREGASVLMTDVSE-PALEKAIAKVKELVPFAPRLDTLKCDVSKEADIATAVEKLD-SWGGVDIMFNNAGIMHADDADAIDt 111
                 7*********************998887766.78888899********************************8.5569999*****9998665555431 PP

                 .HHHHHHHHTTTTHHHHH..HHHHTTT....S--SEEEEEEEHHHHH--TT.-HHHHHH CS
          KR 102 .aedleqvlapKvkGawn..Lhelled....esldffvlfSSiagllgsag.qanYaaa 152
                  ++ ++   a  vkG+w    h +l+     ++   ++ ++S  +l+g+a+ q +Y+a 
  KKY22755.1 112 pEKIWDLTQAINVKGVWFgsKHAVLSMrkhgKKSGSVINTASFVALMGAATpQLAYTAS 170
                 14456666666788888422233333333457777888888888888876447777776 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.5e-07   0.00046       5      65 ..      17      77 ..      13      98 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.5e-07
                E--.SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHH CS
     3HCDH_N  5 iGa.GtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaala 65
                 Ga G +G + + +fa++g +V ++d+se aleka +k+++ +  ++ +  + + +v++ ++
  KKY22755.1 17 TGAaGGIGLETTILFAREGASVLMTDVSEPALEKAIAKVKELV-PFAPRLDTLKCDVSKEAD 77
                5655***********************************9843.333333333344444444 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.4e-05     0.042       7      84 ..      22     110 ..      17     121 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-05
                      TTSH.HHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT...TEEEEESBCCG...BS......SSTTTEEEEEEESTGGGSSHHHHHH CS
  Methyltransf_25   7 GtGr.ltlalakrlgkakvtgvDiseemleaareraeeegl...nvefvqgdaed...lp......fedgsfDlvvssgalhhlsdedlek 84 
                      G G  +t+ +a++ g a+v+++D+se +le+a ++++e  +   +++ +++d+++   +          g +D+++ + +++h +d+d+ +
       KKY22755.1  22 GIGLeTTILFARE-G-ASVLMTDVSEPALEKAIAKVKELVPfapRLDTLKCDVSKeadIAtaveklDSWGGVDIMFNNAGIMHADDADAID 110
                      5564256778888.4.********************9954466688888888844222222222223556778877755577777776655 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.3e-05     0.098      28      84 ..       3      59 ..       1      82 [. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.3e-05
                   HHCT---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHCCSSEEE CS
  THF_DHG_CYH_C 28 ketgielegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeitreadivv 84
                   ++t+  l+gk++v+ G+   +g   ++l+++++a V +++ +   l++ + +   +v
     KKY22755.1  3 EATKGRLAGKNAVITGAAGGIGLETTILFAREGASVLMTDVSEPALEKAIAKVKELV 59
                   5678899********************************999999988877665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1804.84
//
Query:       KKY22756.1  [L=487]
Description: putative glutamine synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-84  282.1   0.0    7.1e-84  281.7   0.0    1.1  1  Gln-synt_C  Glutamine synthetase, catalytic domain


Domain annotation for each model (and alignments):
>> Gln-synt_C  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.7   0.0     4e-88   7.1e-84       2     345 .]     122     483 ..     121     483 .. 0.89

  Alignments for each domain:
  == domain 1  score: 281.7 bits;  conditional E-value: 4e-88
                 T-HHHHHHHHHHHHHHTTCEEEEEEEEEEEEESEECCCESSEEEEEEE.T......B...B.TSS-TT..BHCCCCCTCCHHHHHHHHHHHTT--EECC CS
  Gln-synt_C   2 rdPRsvlkralarlaeeGltvvvgpElEFflfdkeedkeasksllevdse......ekgrpaekggyf..svapvdeaedlrreivealealgieveas 92 
                 +dPR++lk +++++++ G+ +++g+E+EFf f++ +d ++++++ +   +       +  p+  +g+f  s+++  + +d+  +i +++e++ +++e  
  KKY22756.1 122 ADPRQLLKLMVDKVENAGYGAMAGAEFEFFQFRTPKDPNSTQQISSTA-KflrenpVEALPSLTEGMFgySLTRPVHNQDYYYDIFSTCEKFRCNIEGW 219
                 69********************************99977333332222.2567777445555555555114555559********************** PP

                 EEECCCTEEEEEE--EECHHHHHHHHHHHHHHHHHHHHTT-EEE-SSSSSTTS---BEEEEEEEEECTTEESSB-TTSG....GG....B-HHHHHHHH CS
  Gln-synt_C  93 hhEvatgQvEinlkfadalkaaDnvvtfKrvvkevArkhgltatFmpKplegdnGsgmHvhlSlwdkdgknlfadedde....ya....lselarhfig 183
                 h E+++g +E  l+++++ ++aD++ +fK++vk++A+khg+t +Fm+Kp +g +G++ Hvh+Sl++k+gknlf+  +++     +    ls+++rhf++
  KKY22756.1 220 HTESGPGVYEAALEYHEVKEMADRASLFKYAVKSIASKHGITPCFMAKPRQGLPGNSGHVHCSLVSKSGKNLFFRGEKDpnppFKdvefLSDIGRHFLA 318
                 ************************************************************************986554312222233489********* PP

                 HHHHHHHHHHHHHS-SCCHHHHCSSSTTSSSBEEEESS-TTCSEEEE-...TSGGCSTEEEECEBTTS-HHHHHHHHHHHHHHHHHTT--------S-S CS
  Gln-synt_C 184 GllkhakaltaltaptvnSYkRlvpgyeaPvalawgarNRsallRipa...skekakrvElRlpdasaNPYLalAallaAgldGienklepgepvekdl 279
                 G+++ +++++ ++apt+nSYkRlv++++aPv+++wg + R a++R +a   + +ka+r+E+R+++a++NP+L+lAa++  g +G+e+kle++ p  +  
  KKY22756.1 319 GVIDGLADIMPIVAPTINSYKRLVENFWAPVTVSWGLEHRAASIRLIApptAPPKATRLEIRVAGADTNPFLVLAAIVGLGWRGVEKKLELKLPPLSKG 417
                 **********************************************9999899***************************************9999999 PP

                 SSS-TTTHTSS-B--SSHHHHHHHHHCS.HHHCCSS-HHHHHHHHHHHHHCHHHHHCT--HHHHHHH CS
  Gln-synt_C 280 yelspeerkgieelPasleeAlealeed.ellkevlgeevieaylalkraEleeleeevsdwelery 345
                 +++  e   + e+l++sl+e+  ++ ++ ++++ev+g+e++++y  ++++E + ++e+v+dwe++ry
  KKY22756.1 418 ADVGGES-DKGERLAKSLKESTARFMRKeSVAREVFGDEFVDHYGGTREHECRLWDEAVTDWEMRRY 483
                 9999987.5789**********999888688899*******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 3014.23
//
Query:       KKY22757.1  [L=1564]
Description: hypothetical protein UCRPC4_g03082 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.087   12.8   0.1        0.2   11.7   0.1    1.5  1  HUN       HPC2 and ubinuclein domain


Domain annotation for each model (and alignments):
>> HUN  HPC2 and ubinuclein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   1.1e-05       0.2      17      32 ..     341     356 ..     341     364 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.1e-05
         HUN  17 DieDpFIDDsElydel 32 
                 D++DpFID+sE   ++
  KKY22757.1 341 DQTDPFIDNSEPQVDV 356
                 99*********76665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       881  (0.0491383); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.52
# Mc/sec: 8976.41
//
Query:       KKY22758.1  [L=432]
Description: putative mfs multidrug [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-27   96.8  35.4    2.3e-25   89.3  36.8    3.0  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3  36.8   1.3e-29   2.3e-25      40     329 ..      51     381 ..      48     388 .. 0.77

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 1.3e-29
       MFS_1  40 lyalgaavaslplGrlsdrfGrrr.vlllglllfalg.lllll.fa...........sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergrai 123
                 + ++ ++++s  + +++d fG  + v +l+  lf+lg ++ ++ +a           +    +++++r++ G+++++ ++++aa++ad+f  ++rg ai
  KKY22758.1  51 CSTFSSSIFSTSTQHVADHFGVSKvVAVLSSSLFILGyAFGPSlWApfselqgpvavAKDLqTVMIGRFFGGFFGSCPLSVVAAVFADIFDNTQRGTAI 149
                 556677888888999******9999************66666676333344444456446669************************************ PP

       MFS_1 124 gllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeee....................kgtgpaplvp... 198
                  ++s+++ lG++lgp +gg++  s+lgWr++ y+++i+++ af l +++l e++p+   +s++ e+                             +   
  KKY22758.1 150 VIFSTTVFLGPMLGPFIGGFINmSYLGWRWTEYLVGIMGFTAFTLNVFFLEESYPPVVLVSKASELrrrtknwgihakqeevevdlR--------Elvt 240
                 **************************************************9999999999999998999988888777555444442........2322 PP

       MFS_1 199 .....awkallkdpvlwillialllfffgfsglltllplylqevlgls.........glllaglllallalvgailallagrlsdr..lgrrrrlllal 281
                      ++++l++ pv   +++++++++f++ g+l+   l+    +g++           +l+gl+ +++ l+++i   l+ +l+d   + +  ++  + 
  KKY22758.1 241 knfsrPLRLLVTEPV---VFLVSFYMSFIYGGILFSAGLF---WFGWTsrssvhwivP-ILSGLFTGFGLLAIFIQ--LFNYLIDSylMFAASAIAANT 330
                 344446777777774...6777777777888877777775...688888888777653.55554444444444444..889999887766678888888 PP

       MFS_1 282 lllllaalglallavt.ssavllllvlvliGf.glgfv.fpsllalasdla 329
                 ll +++a+g+ l+a    + + + +++ l+G+ ++ +v  p++++l  + +
  KKY22758.1 331 LLRSCFAAGFPLFAEQmFNGMGIDWASTLLGCiAAVLVpIPIWFYLYGHKL 381
                 888888888888887766777777799999996666556777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2684.90
//
Query:       KKY22759.1  [L=209]
Description: putative mitochondrial f1f0-atp synthase g [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-33  114.4   0.7      7e-33  113.4   0.1    1.7  2  ATP-synt_G  Mitochondrial ATP synthase g subunit
  ------ inclusion threshold ------
      0.027   14.2   2.1      0.027   14.1   0.2    1.7  2  GARP        Glutamic acid/alanine-rich protein of Trypanosoma


Domain annotation for each model (and alignments):
>> ATP-synt_G  Mitochondrial ATP synthase g subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.49   4.4e+03      40      43 ..      33      36 ..       3      68 .. 0.50
   2 !  113.4   0.1   7.8e-37     7e-33       2     100 .]      88     201 ..      87     201 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.49
  ATP-synt_G 40 slyk 43
                +++ 
  KKY22759.1 33 EASA 36
                2222 PP

  == domain 2  score: 113.4 bits;  conditional E-value: 7.8e-37
  ATP-synt_G   2 kveslvpkavyyskvglelskqvakkeklapPtvaefqslykqllktalasps................kpqellerlknlkkeeallagvvaaevlgf 84 
                 +v+sl+p++vyyskvglel+k v+k++++ pP++++fq+++++l+++  +sp+                +p+++l++++n++++++++ gv+ aevlgf
  KKY22759.1  88 FVDSLIPPTVYYSKVGLELAKLVFKGQNMYPPNLQTFQAYFQPLINA-AKSPQtllskasqatssassyTPETILSSVRNVNRQQLATIGVLSAEVLGF 185
                 899********************************************.666667********************************************* PP

  ATP-synt_G  85 FsvGEiIGRrklvGYk 100
                 F+vG +IG++k+vGY+
  KKY22759.1 186 FTVGTMIGKMKVVGYR 201
                 ***************7 PP

>> GARP  Glutamic acid/alanine-rich protein of Trypanosoma
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2     3e-06     0.027      22     102 ..      18      93 ..      12     101 .. 0.85
   2 ?   -1.0   0.1      0.14   1.2e+03      85     114 ..     139     166 ..     131     173 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3e-06
        GARP  22 ssleeeaaaaaskaskAkarseeaverAesaaendteakelvkrakeaaaeateAaeaAetaasevegeaanlkavaeeyl 102
                  ++++++ ++as++ +A+a+++e++  A s+a++      l+    +a  ++++A+  A  a+++v g+  ++ a++++ +
  KKY22759.1  18 LRHQQQTIRHASSTGEASAKAKETASSAVSKASE-----GLTRVTSTAGPAISNAVSGAGNALRKVGGRTGKVVAFVDSLI 93 
                 5678889999999999999999999999998877.....66777778888999******************9999988765 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.14
        GARP  85 sevegeaanlkavaeeylesldksLkslae 114
                 + +  +a++++++a++y+++  ++L s+++
  KKY22759.1 139 QTLLSKASQATSSASSYTPE--TILSSVRN 166
                 44455666677777777666..66666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       933  (0.0520386); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1353.42
//
Query:       KKY22760.1  [L=362]
Description: putative d-isomer specific 2-hydroxyacid dehydrogenase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-42  144.3   0.0    5.9e-42  143.0   0.0    1.7  2  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    6.2e-06   25.9   0.0    7.7e-06   25.6   0.0    1.4  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
  ------ inclusion threshold ------
      0.015   15.4   0.0      0.024   14.8   0.0    1.3  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
       0.17   12.0   0.1        0.3   11.2   0.1    1.4  1  Aurora-A_bind  Aurora-A binding


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.0   0.0   1.3e-45   5.9e-42       1     178 []     129     322 ..     129     322 .. 0.86
   2 ?   -3.0   0.0      0.88   3.9e+03     150     169 ..     328     347 ..     325     350 .. 0.77

  Alignments for each domain:
  == domain 1  score: 143.0 bits;  conditional E-value: 1.3e-45
                   HHHHHHHHTTHHHHHHHHHTT..CCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHH.HTT-EEEEESSSHHHHH...CHHHHTC.E....EC.SH CS
  2-Hacid_dh_C   1 lalllallrrlaeadeevreg..ewksekallgkelsgktvGiiGlGrIGqavakrlk.afgmkviaydrskkkee...eeeelgv.e....lv.sl 85 
                   +al+lal++ +++ d+ ++e    w   ++ +  +l+gkt+G++GlG++G ++a+++  +fgmk++a++ + ++e+   +++++g+ +    ++ + 
    KKY22760.1 129 FALILALAKGIPREDNITKEVptSW---QTRSNISLAGKTLGLLGLGKLGANTARTAVlGFGMKILAWSENLTQEKadqQAQSKGLpKgtflVApTK 222
                   589*************999983355...7888889*********************999***********999887655334333321111122478 PP

                   HHHHHH-SEEEE-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHH.......HHSTTEEE-S CS
  2-Hacid_dh_C  86 eellaesDivslhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspl.......lelpnviltP 175
                    +l+++sDi+s+h+ l+p trh++++  l++mk++++liNt+RG+l++e +Ll+ L +g+i+gaalDvf++eplp+dsp+        +  ++i++P
    KKY22760.1 223 ADLFRHSDILSIHIVLSPRTRHIVSSPDLSLMKPTSLLINTSRGPLINETDLLTHLSAGRIRGAALDVFDTEPLPADSPWrttkwgtESRSELIISP 319
                   99*****************************************************************************9777744334666***** PP

                   S-T CS
  2-Hacid_dh_C 176 Hia 178
                   H++
    KKY22760.1 320 HMG 322
                   *97 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.88
                   EES--SSSSSGTCHHHHHST CS
  2-Hacid_dh_C 150 alDvfeeeplpedspllelp 169
                    lDv++ e++ + +++l+ +
    KKY22760.1 328 ILDVWYDEQAANLERWLTGE 347
                   69*****9999877777655 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.7e-09   7.7e-06      27      92 ..      44     110 ..      10     353 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.7e-09
                 CSSHHHCHHHHTTESEEE.E-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TT CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh  27 ellteellekakdadali.vrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpg 92 
                 +   + l+e++k + a++ +r +t + + +l++lp+Lk+ ++ g+   ++D++a++ +Gi+++ + g
  KKY22760.1  44 TTNPDALIERLKPYNAILsMRERTAFPRSILSELPNLKFLQTTGTRNASIDIQACEDLGIILAGTTG 110
                 566789*******99876256777************************************9988776 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   5.4e-06     0.024       2      90 ..     166     264 ..     165     284 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.4e-06
                    EEEE--SHHHHHHHHHH.HHTT-EEEEE..-SSHHHHHHHHHTT......EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEE CS
  NAD_binding_2   2 igfiGlGvMGsnmalnl.lkagykvavy..nrtkekveelvaeg......akaaesieelvasldvvitmvkagkavdevieg.llealkkgdili 87 
                    +g++GlG++G+n a+   l  g+k+ ++  n+t+ek+++ ++++      + +a + ++l+++ d+  + +  ++ +++++++  l+ +k+ ++li
     KKY22760.1 166 LGLLGLGKLGANTARTAvLGFGMKILAWseNLTQEKADQQAQSKglpkgtFLVAPTKADLFRHSDILSIHIVLSPRTRHIVSSpDLSLMKPTSLLI 261
                    79************9884699******944589999999999988999999999999***********************9998788899999999 PP

                    E-S CS
  NAD_binding_2  88 dgs 90 
                    ++s
     KKY22760.1 262 NTS 264
                    887 PP

>> Aurora-A_bind  Aurora-A binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   6.7e-05       0.3      30      59 ..     328     358 ..     324     362 .] 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.7e-05
  Aurora-A_bind  30 nvDsWFeek.ANLENkfpgkngvgelfqskt 59 
                      D W++e+ ANLE  + g++ + ++  ++t
     KKY22760.1 328 ILDVWYDEQaANLERWLTGEDVLEKITSKNT 358
                    57****99846*********98888766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 2233.96
//
Query:       KKY22761.1  [L=370]
Description: putative xylitol dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-27   94.8   1.2    2.8e-27   94.8   1.2    2.2  3  ADH_N           Alcohol dehydrogenase GroES-like domain
    5.3e-15   55.5   0.0    8.9e-15   54.8   0.0    1.4  1  ADH_zinc_N      Zinc-binding dehydrogenase
    6.7e-05   22.5   0.3      0.012   15.1   0.3    2.5  2  Glu_dehyd_C     Glucose dehydrogenase C-terminus
  ------ inclusion threshold ------
       0.11   12.0   0.1       0.22   11.0   0.1    1.5  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.46   2.1e+03      43      57 ..      25      39 ..      24      41 .. 0.88
   2 !   94.8   1.2   6.2e-31   2.8e-27       2     109 .]      44     154 ..      43     154 .. 0.97
   3 ?   -3.8   0.1       2.6   1.2e+04      39      61 ..     263     285 ..     261     292 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.46
                EEEESTT-CS--TT- CS
       ADH_N 43 veevgpevkklkvGd 57
                ++e+gp v+++++G+
  KKY22761.1 25 IAEAGPTVEEVQKGE 39
                8999********997 PP

  == domain 2  score: 94.8 bits;  conditional E-value: 6.2e-31
                 TEEEEEEEEEEE-HHHHHHHTTS..TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTS.S-SSSBS CS
       ADH_N   2 gevlikvkaagiCgsDlhilkgg..kelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvs.ldGgfae 97 
                 gev++ vk++giCgsD+h+++ g    + v+++ ilGHE +G++ +v p+v++lk GdrV++ep+i+c +C+ C +g++n Ce+ ++l++  ++G + +
  KKY22761.1  44 GEVTVGVKSTGICGSDVHFWHAGciGPMIVQADHILGHESAGVILAVHPSVTHLKPGDRVAIEPNIPCFTCEPCLTGRYNGCENVAFLSTPpVPGLLRR 142
                 79*******************9999999**************************************************************99******* PP

                 EEEECGGGEEEE CS
       ADH_N  98 yvvvpekklvkl 109
                 yv  p+  ++k+
  KKY22761.1 143 YVNHPAVWCHKI 154
                 *****9999875 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 2.6
                 EEEEEEEESTT-CS--TT-EEEE CS
       ADH_N  39 ivGeveevgpevkklkvGdrVvv 61 
                  +G+ ++v+ ++ ++k G +V+v
  KKY22761.1 263 CTGVESSVNTAIWTVKFGGKVFV 285
                 56666677777777888888877 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0     2e-18   8.9e-15       1     129 [.     193     325 ..     193     326 .. 0.90

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 2e-18
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEET.......TTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCT CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadeviny.......keadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGgg 91 
                 ++Gl ++ ++ a+Ga  ++ +d+++ +l++ak+l +  +i+y        e d   +i +++g   + +++ec+G+++++++a+  +k gG+++v+G+g
  KKY22761.1 193 PIGLVTLLCCQAAGAcPIVITDIDQGRLDFAKSL-VPSAITYkvafglsAE-DQANAIIKAFGNFRPSIALECTGVESSVNTAIWTVKFGGKVFVIGVG 289
                 79*************88888**************.7777777788887433.6677777777799********************************** PP

                 SSEEEEEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  92 kgeeefdlrnlllkeksilGsllgslreefkealdlla 129
                 k+e ++++++l  +e+ ++   ++   +++++a++l++
  KKY22761.1 290 KNEMTVPFMRLSTQEIDLQYQYRYC--NTWPRAIRLVK 325
                 *******************999999..9******9986 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.3   2.7e-06     0.012       4     136 ..     162     292 ..     159     305 .. 0.66
   2 !    4.7   0.0    0.0042        19     182     204 ..     331     353 ..     314     364 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.7e-06
  Glu_dehyd_C   4 gvLvEPisiveKaielaeasrsafewepesalvlGaGslGLLalalleaeerglervyvlg.rrdrpdptidlveelGatYvd....sretpvdeipe 96 
                  g L+EP+s++  a+e        ++   + + + GaG++GL++l   +a   g   + +++  + r d +  lv +   tY      s+e++ + i +
   KKY22761.1 162 GSLLEPLSVALAAMERS-----GVRL-GDAVTIHGAGPIGLVTLLCCQA--AGACPIVITDiDQGRLDFAKSLVPS-AITYKVafglSAEDQANAIIK 250
                  8899***9988777643.....3333.467899**********777765..4555455555233344444444443.234432122256666666666 PP

  Glu_dehyd_C  97 ase..emdlvvEaTGsakhafeaiealapnGvaaLlGvpeds 136
                  a     + + +E+TG    +  ai  ++  G +  +Gv +++
   KKY22761.1 251 AFGnfRPSIALECTGVESSVNTAIWTVKFGGKVFVIGVGKNE 292
                  654114579999999999999999999999999999997654 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0042
  Glu_dehyd_C 182 ldelvtkvvdldeleeAfeddde 204
                  l++lvt++ +++++ +Afe+  +
   KKY22761.1 331 LEKLVTHRFPIEDALKAFETAAD 353
                  89****************96543 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1     5e-05      0.22       3      38 ..     186     222 ..     184     232 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5e-05
                     EEEE--STTHHHHHHHHHHCT.SEEEEE-S-HHHHHH CS
  UDPG_MGDP_dh_N   3 isviGlGYvGlvtaavlaeig.hevigvDideekvdk 38 
                     +++ G+G +Glvt ++  ++g   +++ Did+ + d 
      KKY22761.1 186 VTIHGAGPIGLVTLLCCQAAGaCPIVITDIDQGRLDF 222
                     8999***********999999789********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 2213.37
//
Query:       KKY22762.1  [L=168]
Description: hypothetical protein UCRPC4_g03088 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.035   14.1   0.3      0.058   13.4   0.3    1.3  1  FixQ      Cbb3-type cytochrome oxidase component FixQ
      0.065   12.5   0.0      0.074   12.3   0.0    1.0  1  Sbt_1     Na+-dependent bicarbonate transporter superfamily


Domain annotation for each model (and alignments):
>> FixQ  Cbb3-type cytochrome oxidase component FixQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.3   6.4e-06     0.058      12      42 ..      10      43 ..       6      45 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.4e-06
        FixQ 12 swgllflvllfygvviyafrpgn...rkdfedaA 42
                 +g ++ ++l+ ++++y++r++n   + + ++ A
  KKY22762.1 10 LIGAIAVTVLLFALLAYLLRKKNpftKHRADALA 43
                57999******************99777777766 PP

>> Sbt_1  Na+-dependent bicarbonate transporter superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.3e-06     0.074      55     140 ..       7      93 ..       2     126 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.3e-06
       Sbt_1  55 llallaavvlgllipllaflilrkltkldkvdaaaiAalY.GsvSavtfaaalavlesqgiayegymvallalmeipaivvalllak 140
                 +  l+ a+++ +l+  l  ++lrk + ++k  a a+Aal  Gs+S          +++++ + ++ ++ +   m ip+iv+   la 
  KKY22762.1   7 IGILIGAIAVTVLLFALLAYLLRKKNPFTKHRADALAALEgGSISSTETSFEKPHISHHQAPPKPRATGAARQMSIPSIVMTASLAG 93 
                 56678899999998888899999999************85279***9999999***************************9988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       740  (0.0412739); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1076.42
//
Query:       KKY22763.1  [L=488]
Description: putative alpha-amylase a type-1 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-41  141.6   0.0    7.7e-41  140.8   0.0    1.3  1  Alpha-amylase  Alpha amylase, catalytic domain
    1.4e-20   73.3   0.2    2.5e-20   72.5   0.2    1.4  1  DUF1966        Domain of unknown function (DUF1966)


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.8   0.0   8.6e-45   7.7e-41      16     336 ..       1     288 [.       1     290 [. 0.85

  Alignments for each domain:
  == domain 1  score: 140.8 bits;  conditional E-value: 8.6e-45
                    CT-SCEEE-B-CE.......-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHSTTSGGGCCC-E... CS
  Alpha-amylase  16 LGvtaiwlsPifk.......spqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkkkgepkrdyyiwkeg 104
                    +G++aiw+sPi+k         qa+hgY+++d ++++++fGt +dl +L +++h++g+ +++D+Vv Ht+   + ++ +++  ++ +++ y  ++g
     KKY22763.1   1 MGFDAIWVSPITKqfeqntgHGQAYHGYWQQDLYSLNKHFGTGDDLRALADELHKRGMFLMIDVVVGHTAWPGSRDTVDYTVFEPFNNESYY-HSG 95 
                    8*******************999**********************************************99998877777777766555555.333 PP

                    ...ESS-STTC-TTTTCSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCC.CCCCCCTTT-SEEEETTCCCTTTCCCCHCCHCCHHHHHHHHH CS
  Alpha-amylase 105 keekeppnnwkslfdgsaweydekaqeyylhlflkklpdLnteneevrkelkd.vvkfwlekgidGfRlDvvkhvskvealesngeflheftqaln 199
                            +   ++ gs+ +   ++q+ +l  ++  lpd+ te +++ k l+  v+  + +  +dG+R+D v  +s           l  +++a+ 
     KKY22763.1  96 --------DCLTADAGSDPT---QTQNCWLGDDVVALPDIRTEDDSIAKLLQSfVADTVKNFAADGIRIDSVVNISP--------GVLPGINKAAG 172
                    ........333334444444...4444456679********************6666666666**************........99999999998 PP

                    HHTCCGTT-EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS-HHHHHHHHHHHHHHS-CCCTTCEEES--TTS--HHHH CS
  Alpha-amylase 200 etvasrkevmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlksisakklkellkkwlkaleeaaeeavtflgnHDqeRilsr 295
                            v+++gEv ++a+    ++ ++++++    +++ ++    ++    ++++  a++l + l+ +++++++  +    f +nHD++R++ +
     KKY22763.1 173 --------VYCIGEVLQGATA--TACGYQDYMDGF--INYAQYFPLIAML---KGNDAVAQTLVQELSAIQSKCKD-PSLLGSFSENHDNPRLGYY 252
                    ........89*******9995..677778888877..6666666655555...56777799**************9.999**************** PP

                    TTSSTTTTHHHHHHHHHCCCTSSSEEEEETTCCCT----ST CS
  Alpha-amylase 296 lgddsaeaekklklaaillltlrGvpviYyGeEigmtggkd 336
                    + d+s      + +a+++ ++++G+p+iY+G+E+ ++ggk 
     KKY22763.1 253 TDDMS-----LASNAMAFDIMYDGIPIIYQGQEQKFSGGKS 288
                    *9999.....89**************************986 PP

>> DUF1966  Domain of unknown function (DUF1966)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.2   2.8e-24   2.5e-20       2      90 .]     335     423 ..     334     423 .. 0.99

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 2.8e-24
     DUF1966   2 lysdkstlalrKgpegsqvvtvlsnkGssgssytlslkssgyaagtevvdvlsCksvtvdssgeltvtmekGePrvlvpksklegsglC 90 
                 +ysd++++a+rKg +g qv+t+++n+G+ g + tl+++++++ +g+++++v+ C+sv v+s++  t t+++G+P v++ +s ++++ +C
  KKY22763.1 335 VYSDDHNIAFRKGYAGDQVITIINNNGAIGTNFTLEIPETSFVQGANLTEVVGCTSVIVGSNSTFTATITNGMPAVYALSSIVDQTVIC 423
                 8*************************************************************************************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3190.72
//
Query:       KKY22764.1  [L=1462]
Description: putative alpha-glucan [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-17   62.2   0.0    9.5e-17   61.5   0.0    1.3  1  Glyco_transf_5   Starch synthase catalytic domain
    1.7e-05   24.4   0.0    5.3e-05   22.8   0.0    1.7  1  Glycos_transf_1  Glycosyl transferases group 1
    0.00045   20.2   0.0     0.0037   17.3   0.0    2.2  2  Glyco_transf_4   Glycosyltransferase Family 4
  ------ inclusion threshold ------
       0.03   14.7   0.0      0.076   13.5   0.0    1.6  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain


Domain annotation for each model (and alignments):
>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   2.1e-20   9.5e-17       2     214 ..     176     383 ..     175     386 .. 0.79

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 2.1e-20
  Glyco_transf_5   2 ilfvasEv..apl...aktGGLadvvgaLpkaLaklghdvrvilPrygaikeekkeleevaelskaaedeveve.v...ekvkvaklkkdgvdvy 87 
                     +l+++ E+    +   +k GGL+ +++ + k L ++  d   ++P  g ++  ++  ee  +        + v+ +   ++++v  +  ++++++
      KKY22764.1 176 VLIATVEYdiEDWavkIKIGGLGVMAQLMGKNLGHQ--DLIWVVPCVGGVDYPENPDEEAEP--------MAVKiLgrtYDIQVRAHILRNITYV 260
                     7888888866233445*****************886..89999****888887643333333........44443134588889899999***** PP

  Glyco_transf_5  88 fldnpeffdreg..lYgdkgedyednaerfalfsraalelleklgwkpdvihahDWhtalvpallkelykerglfkkiktvftiHNlayqgrfp. 179
                     +ld+p f ++++  +Y +   d  + a  ++++++ ++e++++  +kpd+ h++D+h a++p++l            i++++++HN ++qg +p 
      KKY22764.1 261 LLDAPVFRQQSKsdPYPE-RMDDLESAIYYSAWNQCIAETIRR--YKPDIYHINDYHGAIAPLYLLPDT--------IPCALSLHNAEFQGLWPm 344
                     ******99766678**54.666677888888************..89******************9866........*****************9 PP

  Glyco_transf_5 180 ......kdelaalglpaedfekldglefygkvnflkagivy 214
                           +++ +  +lp+e     + ++f + +n+l+ag  y
      KKY22764.1 345 rneketNEVCKVYNLPNEVV--QEYVQFGEVFNLLHAGASY 383
                     88766333336688886554..5677788899999988765 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.2e-08   5.3e-05       9     112 ..     465     570 ..     458     589 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.2e-08
                      TTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.....STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEE CS
  Glycos_transf_1   9 lgknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaG....ngeeekelkklaeelelsdnviflgevsredleellknadifvl 98 
                      l+++ + +++++vgr + +Kg+dl+ + f+++ ++ +p+++l+ +G       +++ +k          +v    e      + +++ a  +++
       KKY22764.1 465 LNIDPEAELFVFVGRWSMQKGIDLIADIFPSILEK-HPKTQLIAVGpvidLYGRFAAMKLDKLMKVFPGRVYSKPEFT-ALPPFIFSGAEFALI 556
                      67888999**************************9.**********77652333333333333333334444444443.455556666****** PP

                      EESSBSS-HHHHHH CS
  Glycos_transf_1  99 psisEgfGivllEA 112
                      ps+ E+fG+v++E 
       KKY22764.1 557 PSRDEPFGLVAVEF 570
                      ************95 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   8.4e-07    0.0037      61     118 ..     293     348 ..     263     357 .. 0.83
   2 ?   -0.3   0.0      0.21   9.5e+02       8      37 ..    1040    1069 ..    1038    1101 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 8.4e-07
  Glyco_transf_4  61 lrrlrrllkrekpDvvHahspaalgaallalrrrlgiplVltvHglyekrllkarlkp 118
                      + +++ ++r+kpD+ H+++++ ++a l  l     ip+ l++H+ + ++l++ r+ +
      KKY22764.1 293 NQCIAETIRRYKPDIYHINDYHGAIAPLYLLP--DTIPCALSLHNAEFQGLWPMRNEK 348
                     3568999*****************99998888..6************87777776655 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.21
  Glyco_transf_4    8 vleLaraLarrGheVtvvtpgddgpleeev 37  
                      +l L + +a++ ++Vt++t +++ p+ +  
      KKY22764.1 1040 LLALGQVMAANSYQVTLLTGEVSAPASKLY 1069
                      6789999***********999988887772 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.7e-05     0.076      64     111 ..     297     341 ..     235     354 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.7e-05
  Glyco_trans_4_4  64 rrllrqrrerpdvvhahsptaglaarlarrrrgiplvvtlhglllrrg 111
                      ++++  rr++pd+ h++++++++a + +  +  ip+ ++lh++++++ 
       KKY22764.1 297 AETI--RRYKPDIYHINDYHGAIAPLYLL-PDTIPCALSLHNAEFQGL 341
                      3334..9************9999999999.***********9888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.92u 0.30s 00:00:01.22 Elapsed: 00:00:00.47
# Mc/sec: 9378.13
//
Query:       KKY22765.1  [L=603]
Description: putative poly polymerase pap [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   7.6e-108  359.2   0.0   9.7e-108  358.8   0.0    1.1  1  PAP_central   Poly(A) polymerase central domain
    5.4e-57  192.1   0.6    1.2e-56  191.1   0.1    1.8  2  PAP_RNA-bind  Poly(A) polymerase predicted RNA binding domain
      1e-11   44.9   0.0      2e-11   44.0   0.0    1.6  1  NTP_transf_2  Nucleotidyltransferase domain
  ------ inclusion threshold ------
       0.11   12.2   0.1       0.22   11.3   0.1    1.4  1  Nrap_D2       Nrap protein PAP/OAS-like domain


Domain annotation for each model (and alignments):
>> PAP_central  Poly(A) polymerase central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.8   0.0  2.2e-111  9.7e-108       1     247 [.      11     357 ..      11     358 .. 0.99

  Alignments for each domain:
  == domain 1  score: 358.8 bits;  conditional E-value: 2.2e-111
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................ RF
  PAP_central   1 GvtepislakptekdlklteeLieeLkeqnlfeseeetkkreevlekleklvkefvkk........................................ 58 
                  Gvt++is+a pt++d++l+++L++eLk+qn++e +eet+kr++ l+ l +++ efvk+                                        
   KKY22765.1  11 GVTPAISTALPTPQDNTLNDALVAELKKQNNYEAPEETEKRKQTLHLLYRITLEFVKEasrrrgfaekqlaqfggkifpygsyrlgvygpgsdidtlv 108
                  9************************************************************************************************* PP

                  ............................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PAP_central  59 ............................................................lkevpedldlkddslLknldekevrslnGvRvtdeilr 96 
                                                                              l++vp +ldlkd++lLk+lde+e+rs+nG+Rvtdeil+
   KKY22765.1 109 vaprhvsredffdifpgllekmapagaigfmtpvpdafvpiikmelnnieidlifariasLHTVPVTLDLKDNNLLKGLDERELRSVNGTRVTDEILS 206
                  ************************************************************************************************** PP

                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PAP_central  97 lvpnketFrlaLraiklWAkrraiysnvlgflgGvawAllvariCqlyPnaaastlvskfFlvlskWkwpqpvlLkeieekeeplrvWdpkvnksdra 194
                  lvp+++tFr+aLra+klWA+rraiy+n++gf+gGvawA+lvar+CqlyP+a+ st+v kfF+++ +W+wp pv+Lk+ie+   +++vW+p++++sd+ 
   KKY22765.1 207 LVPQAKTFRTALRAVKLWAQRRAIYANIMGFPGGVAWAMLVARVCQLYPAATGSTIVAKFFMIIGRWNWPAPVILKQIENGPLNMKVWNPQIYPSDKR 304
                  ********************************************************************************665599************ PP

                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PAP_central 195 hlmpiitpaypsmnstynvsrstlevlkeelkrgleiteeiesgkakwekLfe 247
                  ++mpiitpaypsm++t+n+s+s +ev+++el+rg e++++i++g+ +w++Lf+
   KKY22765.1 305 NIMPIITPAYPSMCATFNISKSGKEVIMRELTRGGEVVNKIMNGQLPWSALFD 357
                  ***************************************************97 PP

>> PAP_RNA-bind  Poly(A) polymerase predicted RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.45     2e+03      82     117 ..      35      70 ..      23      80 .. 0.63
   2 !  191.1   0.1   2.6e-60   1.2e-56       1     171 []     360     553 ..     360     553 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.45
  PAP_RNA-bind  82 eekeaseekeeeeeeeskevytttfYIGLeleekak 117
                   e k++++ +  ee+e+ k+     + I Le+ ++a+
    KKY22765.1  35 ELKKQNNYEAPEETEKRKQTLHLLYRITLEFVKEAS 70 
                   344444455555555566666666778888888876 PP

  == domain 2  score: 191.1 bits;  conditional E-value: 2.6e-60
  PAP_RNA-bind   1 tFF.skYkyYLsvvassktkeaqkkWsglVESkvRlLvqkLeav.esialahpfnkgfervheckteeeleevqegslkslvkeekea......... 86 
                   tFF +++kyYLs+vass++k+a ++Wsg+VESkvR+Lv kLe++ + i la+pf+kg+er+h+ckt++e++ev +gs+k++++e++++         
    KKY22765.1 360 TFFtQDHKYYLSIVASSNNKDAALAWSGMVESKVRILVLKLEDQtDVIDLARPFTKGYEREHKCKTDAEVAEVRKGSVKYQISETQTTdenhdpkrt 456
                   7*****************************************854889*************************************999999999999 PP

  PAP_RNA-bind  87 ............seekeeeeeeeskevytttfYIGLeleekakskkldlsypvqeFkelckswekykeelmsltvkhvknfdLpddVf..eegekrp 169
                               + e++ e+e++ + +ytttfYIGL++++++  k+l+++yp+q+F ++c+sw +y++el++l+v+ ++ +dLpdd f  e+ge++p
    KKY22765.1 457 aaaqegvtvdgaEGEAKPETEDGGQIIYTTTFYIGLDVKPNN--KNLNITYPIQTFRDMCTSWANYNPELHELEVTPTRCYDLPDDMFdfEKGEVKP 551
                   999999999998777888888888******************..9******************************************8668999999 PP

  PAP_RNA-bind 170 kk 171
                   +k
    KKY22765.1 552 QK 553
                   86 PP

>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   4.5e-15     2e-11       9      93 ..      78     166 ..      36     168 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 4.5e-15
                   HHHTT.TSEEEEEHHHHCTTSCTTSSEEEEEEESTTCHHH...HHHEHHHHHHHHCCCEEECTTEEEEEECEEECCCCTEEEEEECEEE CS
  NTP_transf_2   9 kelep.vakvvlfGSyarGtalkgSDiDllvvlpeevsre...kkeegleklaeiikfleellglevdlvtrekledpllvksileerp 93 
                   k+l + + k++ +GSy+ G +++gSDiD+lvv p++vsre   + + gl++++    ++  +++++  +v++ k+e   + +++ + r+
    KKY22765.1  78 KQLAQfGGKIFPYGSYRLGVYGPGSDIDTLVVAPRHVSREdffDIFPGLLEKMAPAGAIGFMTPVPDAFVPIIKMELNNIEIDLIFARI 166
                   34445899***********************************999999*********************9999997777777666665 PP

>> Nrap_D2  Nrap protein PAP/OAS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   4.9e-05      0.22       2      47 ..     214     257 ..     213     268 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.9e-05
                 HHHHHHHHHHHHHHTT--SS--T.S-S-SHHHHHHHHHHHTSBBSTT CS
     Nrap_D2   2 fkdAclLlkvWlrqRgfgssirk.aggfggfewamllalllqgggkk 47 
                 f+ A+  +k+W+++R +     + +g  gg+ waml+a + q    +
  KKY22765.1 214 FRTALRAVKLWAQRRAIYA---NiMGFPGGVAWAMLVARVCQLYPAA 257
                 8999999***********3...4456889**********99876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.51
# Mc/sec: 3575.50
//
Query:       KKY22766.1  [L=291]
Description: putative flavoprotein oxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-19   69.0   0.0    6.6e-19   68.5   0.0    1.1  1  Flavin_Reduct  Flavin reductase like domain


Domain annotation for each model (and alignments):
>> Flavin_Reduct  Flavin reductase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   3.7e-23   6.6e-19       4     140 ..      96     245 ..      93     258 .. 0.88

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 3.7e-23
                    S-EE-EEEEE.EE.TTEEEEEEESSEEEEETTTTEEEEEEE....TTSHHHHHHHHHSEEEEEEEBCCGHHHHHHTCS...SCCCCCCCCCCCEEE CS
  Flavin_Reduct   4 vaqpvavvttsvp.ptsplgatlssftslsldPplvafslr....lpsstadalkeagefvinllsesqealadafsqksgprtddksifagltwe 94 
                    v++p+  + t+ + +ts++ a++s+   + +dPp++ + ++    ++++t+++l ++ge+vin++se+  ++a+a+s +s+  + ++++++gl++ 
     KKY22766.1  96 VPRPIGFIGTQSKdGTSDNLAPFSYTQVVNHDPPVFIVGFAggmdNAKDTLKNLLDTGECVINIVSEHFIEAANACSINSP-YGTSEWSLTGLHPA 190
                    79999999996666888889****************9999988889********************************999.9************* PP

                    CT.CCCSEEETTCSEEEEEEEEEEECCTT........EEEEEEEEEEEEESTTEC CS
  Flavin_Reduct  95 es.ptgapallgalasleCqvvgsvelgd........helfigeVvavkvgddad 140
                    +s +++ap++++a++s+e +++++ e  +          l + e ++++v++da 
     KKY22766.1 191 PStTVKAPRVKEAVFSVEGKLMNTQEFESratpgkktGVLAVIEGTNFWVREDAI 245
                    **89999****************95554445555555999999999999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 2074.21
//
Query:       KKY22767.1  [L=161]
Description: hypothetical protein UCRPC4_g03093 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   14.0   0.0      0.015   13.8   0.0    1.0  1  DUF3688   Protein of unknown function (DUF3688)


Domain annotation for each model (and alignments):
>> DUF3688  Protein of unknown function (DUF3688)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   8.4e-07     0.015      32     105 ..      16      88 ..       8     108 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.4e-07
     DUF3688  32 neeqytlkqesstgkginetdfintmflrssffenwsetnyfinptlktsknllfndkwyldflqdsystgvvy 105
                  ++ y l +e  t k i e d+i+t  l  +ffe   e n +i p ++      f  k  +++l+d  s  v +
  KKY22767.1  16 RKNIYKLFDEIRTVKDI-ELDIIDTETLMRAFFEGSREQNVLIPPDFNCEALWKFMKKGSVNYLRDVTSIAVTH 88 
                 567799999999***99.79***********************************************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1253.64
//
Query:       KKY22768.1  [L=1018]
Description: putative dsdna-dependent atpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-61  208.4   0.0    2.4e-61  207.4   0.0    1.5  1  SNF2_N      SNF2 family N-terminal domain
    8.6e-16   58.3   0.0    1.9e-15   57.2   0.0    1.6  1  Helicase_C  Helicase conserved C-terminal domain
    4.6e-10   39.7   0.9    1.7e-09   37.9   0.0    2.3  2  ResIII      Type III restriction enzyme, res subunit
    6.9e-06   25.4   0.0    6.9e-06   25.4   0.0    1.9  2  HDA2-3      Class II histone deacetylase complex subunits 2 a
  ------ inclusion threshold ------
      0.051   13.9   0.3       0.37   11.2   0.0    2.3  2  DUF2439     Protein of unknown function (DUF2439)
       0.32   11.1   1.1        1.1    9.4   0.0    2.4  2  ETRAMP      Malarial early transcribed membrane protein (ETRA


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.4   0.0   7.9e-65   2.4e-61      54     348 ..     330     607 ..     311     609 .. 0.89

  Alignments for each domain:
  == domain 1  score: 207.4 bits;  conditional E-value: 7.9e-65
                 TT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH-----------------E CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  54 svrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapklladydv 152
                 +  G iLaDemGLGKT+q+++li+++ +++ +++ +    ++ + +Liv+P +l+++W +e+++++ + ++ v+v +g+k      + ++ ++ + y v
  KKY22768.1 330 DGDGAILADEMGLGKTLQTITLIWTLLKQNPIYESA----PVIKKALIVCPVTLINNWRKEFRKWLGNERIGVFVADGKK-----TRLTDFTMGKSYSV 419
                 56799*******************888877766655....89999*********************************74.....5667899******* PP

                 EEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTHHHHH. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
      SNF2_N 153 vittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllqrpie. 250
                 +i++Y++l+++a      +  k    + vv DEgh+lk  +sk a+a+++L+ts+r+il+GTPiqn+l++++++++f++ +++g+++ f k++++pi  
  KKY22768.1 420 MIIGYERLRQVA-----EDLTKGAGVDIVVADEGHRLKTIQSKSAQAIQSLNTSKRVILSGTPIQNDLSEFFSMVNFVNDGVLGSYKQFVKQFENPIVr 513
                 *********888.....58889999************************************************************************** PP

                 ...........HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-HHHHHH CS
                 ...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 251 ...........aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskekilelll 338
                            ++ ++++++L+ l  +++lrr+ + ++k+lPpkte+++f++  + ++ +Y ++l +            + + +++      + l+l++
  KKY22768.1 514 srqpnaleehiEEGQECSEELARLTTPFILRRTADILSKYLPPKTEYVLFCEPLPAQAYVYRNVLASP---------LFQSIGTSE------NALQLIT 597
                 **************************************************************333222.........112222222......2577777 PP

                 HHHHHHH--- CS
                 xxxxxxxxxx RF
      SNF2_N 339 elrqacnhpq 348
                  l++ cn+p 
  KKY22768.1 598 ILKKLCNSPF 607
                 7777777765 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   6.3e-19   1.9e-15       2     110 ..     648     762 ..     647     763 .. 0.91

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 6.3e-19
                 HHHHHHHHH..HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH....TTSSSEEEESGGGTSSSTSTTESEEEESSSS CS
  Helicase_C   2 kleallell..kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn....kgesdvLiatdvaerGidipkvnlVinfdlp 94 
                 kl++l +ll   +++ ++k+++++n++++l+ +  ll+++g+++++l+g++p+++r+  +++fn    +  + +L++ ++++ G+++ +++ ++ fd++
  KKY22768.1 648 KLRILDQLLdtIHKNTHEKVVLVSNYTSTLDLLAGLLTSSGFSFLRLDGSTPASKRQSLVDDFNrsshQSCFAFLLSAKAGGVGLNLIGASRLVLFDVD 746
                 67788888888899****************8855556888************************887555677************************** PP

                 SSHHHHHHHHTTSSST CS
  Helicase_C  95 rnvtsyiqriGRtgRa 110
                 +n+++ +q++ R++R 
  KKY22768.1 747 WNPATDMQAMARIHRE 762
                 ***************6 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   5.6e-13   1.7e-09       3     170 ..     307     478 ..     305     479 .. 0.82
   2 ?   -1.5   0.9      0.75   2.2e+03     104     129 ..     939     976 ..     883     988 .. 0.47

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 5.6e-13
                 EE-HHHHHHHHHHT.........TTSEEEEEESTTSTHHHHHHHHHHHH-S............-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESS CS
      ResIII   3 elreyQeeaienlleklks...krdkrglikmaTGtGKTlvaaklierllkkgkee.......kflflvprkslleqtleefkkflseaykeigkkvsg 91 
                 +lre+Q e ++ l e +      +   ++++ + G GKTl  + li+ llk++++        k+l+++p  +l++ +++ef+k+l +++  ig +v +
  KKY22768.1 307 HLREHQREGVKFLYECVMGlrdFDGDGAILADEMGLGKTLQTITLIWTLLKQNPIYesapvikKALIVCP-VTLINNWRKEFRKWLGNER--IGVFVAD 402
                 68899998888888666654334555889999*******************9887789****88888888.57999************98..7777777 PP

                 S-B--.........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS..TTTHHHHHT---SEEEEEESS-S CS
      ResIII  92 dkkka..kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak.kswreilekfkeavllglTATpe 170
                  kk++       ++ +++++ +++l +        ++  +    d+++ DE Hrl+   ++  +++++++ ++++ l++Tp 
  KKY22768.1 403 GKKTRltDFTMGKSYSVMIIGYERLRQVA------EDLTKGAGVDIVVADEGHRLKTIqSKSAQAIQSLNTSKRVILSGTPI 478
                 77777554456678999999999999988......6677778889**********9964466667899999*********96 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.75
                 -SEEEEEHHHHHHTH....................HHH CS
      ResIII 104 kkilvttiqsldadseee............eeeseell 129
                  k  ++ ++ ++ d+ ++             +++++  
  KKY22768.1 939 QKASLMLYHHINVDKLTKeeeenhnnikeiPNNDNDDN 976
                 22222223333333222222223444444433333333 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.3e-09   6.9e-06      86     241 ..     642     781 ..     635     790 .. 0.85
   2 ?   -3.3   2.0       1.3   3.8e+03     151     197 ..     922     966 ..     877     976 .. 0.69

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.3e-09
                 HHHT-HHHHHHHHHHHHHTTSS....EEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-..................-SEEEEEEESS- CS
      HDA2-3  86 laetSgKFkvlndlvnliierkrksslnvlvvakskkeldLiEalllGkklkikrysgeklydekkkkskdtkknsrktkeklkkkihsltihllsttr 184
                 + + S K+ +l +l+++i +++     +v++v++   +ldL+ +ll + ++++ r++g +  ++ ++             +++++  h++ + +l + +
  KKY22768.1 642 SNQASTKLRILDQLLDTIHKNT---HEKVVLVSNYTSTLDLLAGLLTSSGFSFLRLDGSTPASKRQSLV-----------DDFNRSSHQSCFAFLLSAK 726
                 6789**************9988...679******************************99999888888...........6778889999999999988 PP

                 --TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------.--EEEEEETTSHHH CS
      HDA2-3 185 qltkdksllenikfdliiafDssvdtsspsveslrtqnrkknk.lpiirlvpinSieH 241
                         l+ i ++ ++ fD + +++++   + r++++ ++  + i+r v   S+e 
  KKY22768.1 727 AGGVG---LNLIGASRLVLFDVDWNPATDMQAMARIHREGQKRrCHIYRFVLKGSVEE 781
                 87555...45555566788**********999999987654434*******9999985 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.3
                 --S-..................-SEEEEEEESS---TTTS--TT-S- CS
      HDA2-3 151 kkkskdtkknsrktkeklkkkihsltihllsttrqltkdksllenik 197
                 +    +t +  rktke+  +k++ +  h +  ++ ++++++  +nik
  KKY22768.1 922 HAL--QTTHSTRKTKEEAIQKASLMLYHHINVDKLTKEEEENHNNIK 966
                 222..355555888888888888888888888887777777666665 PP

>> DUF2439  Protein of unknown function (DUF2439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00012      0.37       4      39 ..     108     142 ..     106     177 .. 0.85
   2 ?   -0.8   0.3      0.67     2e+03      31      79 ..     906     960 ..     902     962 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
     DUF2439   4 yevlYTsqvtkKsKkWhDGflklhsfnkrvvLydee 39 
                 y+vl+ + +tkK+K+W DG  +l++ n  ++L d++
  KKY22768.1 108 YQVLWRKPTTKKHKTW-DGDATLIIRNGTAILRDTS 142
                 9***************.9999999999999988873 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.67
     DUF2439  31 krvvLydeesklvessflknekeeleegeelelek......ylvqveeliseeer 79 
                 +++ ++++e+++++  +  + +++  + +e  ++k      + ++v++l++eee+
  KKY22768.1 906 SKLDMTKQEKQILSGAHALQTTHSTRKTKEEAIQKaslmlyHHINVDKLTKEEEE 960
                 6777788888888888877666666666666666667788888888888888775 PP

>> ETRAMP  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00035       1.1      16      73 ..     630     685 ..     629     690 .. 0.91
   2 ?   -2.3   0.5       1.6   4.6e+03      22      35 ..     957     976 ..     938     988 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00035
      ETRAMP  16 vnlltpeslcdevnkkkekakkaikkiddkiekkkkkkKliiistiatalallvasal 73 
                 v+ l+p++++  +n+    ++  +++  d+i k+ ++ K ++ s   ++l ll+++++
  KKY22768.1 630 VETLPPQLHKSLSNQA-STKLRILDQLLDTIHKN-THEKVVLVSNYTSTLDLLAGLLT 685
                 7889*********997.999999*********99.9*****************99876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.6
      ETRAMP  22 eslcdevnkkk......eka 35 
                 e   +++n k+      +++
  KKY22768.1 957 EEEENHNNIKEipnndnDDN 976
                 44444444332333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1018 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1034  (0.0576719); expected 358.6 (0.02)
Passed bias filter:                      596  (0.0332422); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.50
# Mc/sec: 6133.22
//
Query:       KKY22769.1  [L=1529]
Description: putative abc [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-86  288.9  57.3    4.4e-45  153.7  26.1    4.0  4  ABC2_membrane    ABC-2 type transporter
    1.4e-38  132.5   0.0    2.8e-18   66.7   0.0    2.7  2  ABC_tran         ABC transporter
      2e-38  130.2  11.0      6e-34  115.8   0.1    3.9  3  PDR_CDR          CDR ABC transporter
    1.1e-19   70.8   0.0    3.1e-19   69.3   0.0    1.8  1  ABC_trans_N      ABC-transporter N-terminal
    1.7e-07   31.1   0.1    1.5e-06   27.9   0.0    2.5  3  AAA_25           AAA domain
    3.5e-06   27.0   0.2     0.0013   18.7   0.0    2.4  2  RsgA_GTPase      RsgA GTPase
    1.9e-05   24.7   0.6        0.2   11.4   0.0    2.9  3  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    3.1e-05   23.6   1.6     0.0046   16.7   0.1    2.9  3  AAA_29           P-loop containing region of AAA domain
    3.4e-05   24.3   1.7     0.0046   17.4   0.1    2.9  2  AAA_16           AAA ATPase domain
    7.1e-05   23.0   0.1     0.0094   16.1   0.0    2.7  2  AAA_33           AAA domain
    0.00068   19.1   0.0        1.5    8.2   0.0    3.4  3  SMC_N            RecF/RecN/SMC N terminal domain
     0.0022   18.4   0.1        2.1    8.8   0.0    2.7  2  AAA              ATPase family associated with various cellul
     0.0023   18.5   0.1       0.11   13.1   0.0    2.7  2  AAA_18           AAA domain
     0.0029   17.9   0.8       0.45   10.8   0.1    2.9  2  AAA_22           AAA domain
     0.0079   16.6   0.2          2    8.8   0.0    2.9  2  AAA_17           AAA domain
  ------ inclusion threshold ------
      0.019   14.9   1.2          2    8.3   0.1    2.6  2  NACHT            NACHT domain
      0.021   15.3   0.0      0.056   13.9   0.0    1.7  1  AAA_23           AAA domain
      0.022   15.0   0.4       0.36   11.1   0.1    2.6  2  AAA_28           AAA domain
      0.037   13.6   0.7        1.2    8.7   0.1    2.2  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
       0.04   13.6   3.2       0.36   10.5   0.1    2.7  3  AAA_30           AAA domain
       0.06   13.4   0.0         15    5.7   0.0    2.5  2  MMR_HSR1         50S ribosome-binding GTPase
      0.067   12.9   0.6        5.2    6.8   0.0    2.9  3  IstB_IS21        IstB-like ATP binding protein
      0.091   13.2   0.0        4.3    7.8   0.0    2.6  2  RNA_helicase     RNA helicase
       0.13   12.2   0.0        1.9    8.3   0.0    2.2  2  Rad17            Rad17 P-loop domain
       0.23   11.2   8.9       0.65    9.8   0.1    4.0  3  PDR_assoc        Plant PDR ABC transporter associated


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.0  15.2   1.2e-44   8.3e-42       1     210 []     513     723 ..     513     723 .. 0.98
   2 ?    0.4   0.1       0.5   3.6e+02      52      70 ..     774     801 ..     750     810 .. 0.58
   3 !  153.7  26.1   6.2e-48   4.4e-45       2     208 ..    1181    1394 ..    1180    1396 .. 0.97
   4 ?    1.9   0.1      0.18   1.3e+02       4      38 ..    1456    1490 ..    1453    1506 .. 0.69

  Alignments for each domain:
  == domain 1  score: 143.0 bits;  conditional E-value: 1.2e-44
  ABC2_membrane   1 tqikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.nsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsa 95 
                    +qi++++ r f++  +d sl+ l+ li   ++++++ ++f++l  n++++++r  llff+vl ++f+++ ++ ++   +r+++e+++++ ly+++a
     KKY22769.1 513 EQIQLCVGRGFQRLRQDMSLT-LSGLIGNTIMGFIIASIFYDLAdNTSSFYSRGALLFFAVLLNGFASALEI-LTLYAQRPIVEKHTRYALYHPFA 606
                    69*******************.********************997899999*********************.*********************** PP

  ABC2_membrane  96 yvlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkwl 189
                     ++++++++lp+ +  a++f l+ yf+++l+++  +ff f+l+ ++t+l++s +++ i+a ++s+ +a   a l++l l++++Gf++p+++m +w 
     KKY22769.1 607 EAISSMICDLPYKITNAILFNLVLYFMTNLRREpgAFFTFFLFSFVTTLVMSMIFRTIAATSRSLSQALCPAALIILALVIYTGFVVPPKDMLGWS 702
                    **********************************999*******************************************************55** PP

  ABC2_membrane 190 qwiaylnPltyavealrsnlf 210
                    +wi y+ P+ ya+e+l++n+f
     KKY22769.1 703 RWINYIDPVGYAFESLMVNEF 723
                    *******************97 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.5
  ABC2_membrane  52 r.........pgllffsvlflafsalts 70 
                    +           l++f+++f++++++++
     KKY22769.1 774 YqpshkwrnlGILIAFTLFFMFTYLFAT 801
                    2334444554667777777777655544 PP

  == domain 3  score: 153.7 bits;  conditional E-value: 6.2e-48
  ABC2_membrane    2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedglnrpgllffsvlflafsaltsvapvferergvl.erelvsplysls 94  
                     q++ ++kr   q+wr+ps++ +++++ +l++al++g+ f++++ s +gl+++++ +f+++ ++ ++l+++ p f+++r+++ +re+++++ys++
     KKY22769.1 1181 QLWEVFKRVNAQYWRTPSYI-YSKTALCLITALFIGFTFFKAQLSLQGLQNQMFAIFMLFIVFGNLLQQILPQFVTQRSLYeARERPAKTYSWK 1273
                     8999****************.********************99889999999999999999999****************************** PP

  ABC2_membrane   95 ayvlakvlvelpvsllqalifllivyflvgldls.......rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffip 181 
                     +++++++lvelp+++++a+++ +++y+++gl+ +       r+fl++l+++ ++l +s++g++++a    +e+a+++++l+++++l+++G++ +
     KKY22769.1 1274 VFMMSNILVELPWQTVMAALMYFTWYYPIGLYENtgdsvhiRGFLMFLFIWTFLLWTSTMGHMLIAGIDLAETAANIGNLLFSLCLVFCGVLAT 1367
                     ************************************9998888*************************************************** PP

  ABC2_membrane  182 idsmpkwlqwiaylnPltyavealrsn 208 
                     +++mp++++++++++Plty+v++++s+
     KKY22769.1 1368 PSQMPHFWIFMYRVSPLTYLVSGVLSV 1394
                     ****99*****************9875 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.18
  ABC2_membrane    4 kallkreflqrwrdpslgllwrliqplllalvfgt 38  
                     +a +  ++  rwr+  l++++ ++++ +  +++++
     KKY22769.1 1456 LASISANYSDRWRNFGLLFVFIIFNIAMAVFIYWL 1490
                     55666777788888888866555555555555554 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   5.5e-20   3.9e-17       3     136 ..     188     347 ..     186     348 .. 0.91
   2 !   66.7   0.0   3.9e-21   2.8e-18       1     137 []     880    1031 ..     880    1031 .. 0.91

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 5.5e-20
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................. 79 
                   +  +++ge+++++G+ G+G+StLlk++ag+++     ++ +i+++g + k+  ++++r e  ++ +++ +fp+ltv+++                  
  KKY22769.1 188 GFDGYVEPGEMLVVLGRPGSGCSTLLKTIAGETHGfvvgDASSINYQGISAKQ-MHNQFRGEAIYMAETDVHFPQLTVGQTlafaakaraprdhlypdv 285
                 566789**************************998888888888888888887.9999999999**********************9999999999988 PP

                 ....HHHTCHHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ....esdeeiekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpt 136
                     +++   + +++ +g++++ +t+v+++  + +SgG+++rv++ +a l+ ++l ++D+ t
  KKY22769.1 286 tkemYAEHMRDVMMAMFGISHTINTRVGNDFvRGVSGGERKRVSISEAALSGSPLQCWDNST 347
                 887666666889999************99999***************************987 PP

  == domain 2  score: 66.7 bits;  conditional E-value: 3.9e-21
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................ 79  
                  l+nv+  +k+g+++a++G++GaGK+tLl +la  ++    +Ge l+dg++ ++    s++++ g+++q++ +  ++tvre+                
  KKY22769.1  880 LDNVDGWVKPGTLTALMGPSGAGKTTLLDVLATRVTMgvVSGEALVDGRQRDT----SFQRKTGYVQQQDLHLATSTVRESltfsalmrqpayvprk 972 
                  799999****************************9877778888888776666....************99999999********999999998765 PP

                  HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEE.EESTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
    ABC_tran   80 esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpklll.lDEpta 137 
                  e+ + ++++++ lg++  +d vv+  ++ L   q++r+ +   l+ kp+lll lDEpt+
  KKY22769.1  973 EKIAYVDEVIKLLGMEAYADAVVGVPGEGLNVEQRKRLTIGVELAAKPQLLLfLDEPTS 1031
                  55555********************************************87649***96 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.7       1.9   1.3e+03      44      73 ..     634     663 ..     629     672 .. 0.75
   2 !  115.8   0.1   8.4e-37     6e-34       1      90 [.     734     823 ..     734     825 .. 0.99
   3 !   18.5   1.0     2e-06    0.0014      33      80 ..    1454    1500 ..    1448    1502 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.9
     PDR_CDR  44 shlwrnfgiliaflifflalyllatelisa 73 
                  +l r+ g  + f++f ++++l+++ +++ 
  KKY22769.1 634 TNLRREPGAFFTFFLFSFVTTLVMSMIFRT 663
                 567788889999999998888888777665 PP

  == domain 2  score: 115.8 bits;  conditional E-value: 8.4e-37
     PDR_CDR   1 vPsgpgyenvseenrvCavvGavpGqeyVsGddYlelsfgyssshlwrnfgiliaflifflalyllatelisaekskgevlvfkrgkapk 90 
                 vPsg +y++v   +++C++vGav+G+++VsG++Y+++sf+y++sh+wrn+giliaf++ff+++yl+ate+is++kskgevl+f+rg +pk
  KKY22769.1 734 VPSGGSYDSVPALSKICSTVGAVAGSSVVSGTTYIQESFSYQPSHKWRNLGILIAFTLFFMFTYLFATEYISEQKSKGEVLLFRRGYQPK 823
                 8**************************************************************************************998 PP

  == domain 3  score: 18.5 bits;  conditional E-value: 2e-06
     PDR_CDR   33 dYlelsfgyssshlwrnfgiliaflifflalyllatelisaekskgev 80  
                  ++l+ s + ++s++wrnfg l++f+if +a+ +++  l +  k++ +v
  KKY22769.1 1454 TFLA-SISANYSDRWRNFGLLFVFIIFNIAMAVFIYWLARVPKKNNTV 1500
                  5666.78889**********************9998888777776655 PP

>> ABC_trans_N  ABC-transporter N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0   4.4e-22   3.1e-19       1      81 []      73     164 ..      73     164 .. 0.83

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 4.4e-22
  ABC_trans_N   1 eLartlsrqssssssssss.......e....sssedeeeedseFdlekwlknlreridrdg..ikprklGVvFknLtVeGvgsgadyqpTvgna 81 
                  eLar+l+r+ss+++s+          +    +s  d+++++  F++++w++nl+  ++rd+  +++r++G++FknL+++G+g+ +dyq++vgn+
   KKY22769.1  73 ELARRLTRESSRRHSTLGPsgfqipfSgvekDSLLDPNGPN--FSAKAWARNLVAVTSRDPerYPRRTAGISFKNLNAHGFGTPTDYQKDVGNI 164
                  79******866666555556787655134456666666666..*************************************************96 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.8   1.3e+03      27      50 ..     190     213 ..     184     219 .. 0.88
   2 !   27.9   0.0   2.1e-09   1.5e-06      14      61 ..     871     918 ..     866     942 .. 0.87
   3 ?   -3.4   0.0       8.5   6.1e+03      70     109 ..     990    1029 ..     983    1049 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.8
      AAA_25  27 kgllpagelallaGapgtGKttla 50 
                 +g++  ge  ++ G+pg+G +tl+
  KKY22769.1 190 DGYVEPGEMLVVLGRPGSGCSTLL 213
                 688999***************997 PP

  == domain 2  score: 27.9 bits;  conditional E-value: 2.1e-09
      AAA_25  14 dlaapppprrwlvkgllpagelallaGapgtGKttlaldlalavatGk 61 
                 +++ +p++  + v+g++  g+l++l+G++g+GKttl+  la  v+ G 
  KKY22769.1 871 KIKGEPRRILDNVDGWVKPGTLTALMGPSGAGKTTLLDVLATRVTMGV 918
                 5788999999**********************************9554 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 8.5
      AAA_25   70 eqgkVlyvsaEdsedelrrRlravgealrddarllvldla 109 
                     +V+ v +E+ + e r+Rl    e ++ ++ ll+ld +
  KKY22769.1  990 YADAVVGVPGEGLNVEQRKRLTIGVELAAKPQLLLFLDEP 1029
                  5668999999999999999998444444667777777754 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.017        12      96     124 ..     192     221 ..     155     242 .. 0.72
   2 !   18.7   0.0   1.8e-06    0.0013      87     127 ..     877     918 ..     846     951 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.017
                  HCTT.SEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  96 llkd.ktsvlvGqSGvGKStLinallpele 124
                  +++  ++ v++G  G G StL++++++e++
   KKY22769.1 192 YVEPgEMLVVLGRPGSGCSTLLKTIAGETH 221
                  45555899******************9853 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.8e-06
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLinallpelelkt 127
                  ++ l+++  ++k   +++l+G+SG+GK+tL+++l+ + ++ +
   KKY22769.1 877 RRILDNVDGWVKPgTLTALMGPSGAGKTTLLDVLATRVTMGV 918
                  4567778888887799******************99855443 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.8     2e+03       3      59 ..     200     250 ..     198     255 .. 0.84
   2 !   11.4   0.0   0.00028       0.2       1      19 [.     892     910 ..     892     980 .. 0.88
   3 !   10.6   0.2   0.00051      0.36     259     296 ..    1022    1058 ..     917    1065 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.8
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfe 59 
                 v+ G+ gsG S+LL+++      +++ +g    + ++ ++++i+ ++  +++++++ 
  KKY22769.1 200 VVLGRPGSGCSTLLKTI------AGETHGFVVGDASSINYQGISAKQMHNQFRGEAI 250
                 788999***********......8888999999999999999999888888887765 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00028
      AAA_21   1 lnvliGpNgsGKSnLLdal 19 
                 l++l Gp g+GK++LLd l
  KKY22769.1 892 LTALMGPSGAGKTTLLDVL 910
                 699***************9 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00051
      AAA_21  259 sllliDEpEngLHPkllrrllellkelsrngaQviltT 296 
                   ll++DEp +gL+ +   ++l+ll++l+r  +Q il T
  KKY22769.1 1022 LLLFLDEPTSGLDSQTSWSILDLLEKLTR-HGQAILCT 1058
                  79***************************.66665554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.037        26      21      39 ..     195     213 ..     187     217 .. 0.81
   2 ?   -2.4   0.0       5.8   4.2e+03      20      34 ..     829     843 ..     826     843 .. 0.86
   3 !   16.7   0.1   6.4e-06    0.0046      22      44 ..     890     912 ..     881     916 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.037
      AAA_29  21 lkgatlltGpsGsGKSTll 39 
                 + ++ ++ G+ GsG STll
  KKY22769.1 195 PGEMLVVLGRPGSGCSTLL 213
                 45588999**********8 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.8
      AAA_29  20 dlkgatlltGpsGsG 34 
                 d++ga  +tG+ +sG
  KKY22769.1 829 DEEGARAITGKEESG 843
                 6678999*******9 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 6.4e-06
      AAA_29  22 kgatlltGpsGsGKSTllDAiqa 44 
                    t l+GpsG+GK+TllD +++
  KKY22769.1 890 GTLTALMGPSGAGKTTLLDVLAT 912
                 34799**************8765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.041        29      24      46 ..     195     218 ..     180     266 .. 0.76
   2 !   17.4   0.1   6.4e-06    0.0046      11      83 ..     878     950 ..     874    1060 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.041
      AAA_16  24 p.elvllsGesGvGKsslvrellr 46 
                 p e++++ G +G+G s+l+++++ 
  KKY22769.1 195 PgEMLVVLGRPGSGCSTLLKTIAG 218
                 3489***************99884 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 6.4e-06
      AAA_16  11 qLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql..esaipy...salaqalareellr 83 
                 ++l+ ++ + +++  l+ l G+sG GK++l++ l+++++     +++g++     ++++++     ++q+ +  +l +
  KKY22769.1 878 RILDNVDGWVKPG-TLTALMGPSGAGKTTLLDVLATRVTMG---VVSGEALVDgrQRDTSFqrkTGYVQQQDL-HLAT 950
                 6777777777776.6999*****************988844...55555555433444333332112332222.2222 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.071        51       2      32 ..     199     229 ..     198     306 .. 0.67
   2 !   16.1   0.0   1.3e-05    0.0094       2      55 ..     893     947 ..     892     999 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.071
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdt 32 
                 +++ G pGsG stl++ ++ +++++++   +
  KKY22769.1 199 LVVLGRPGSGCSTLLKTIAGETHGFVVGDAS 229
                 6889***************999977665444 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 1.3e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrr.rlfgtdqqsktdytrvldrl 55 
                 + l G++G+GK+tl++ l+ + ++ ++s  +l + r + t  q+kt y +  d  
  KKY22769.1 893 TALMGPSGAGKTTLLDVLATRVTMGVVSGEALVDgRQRDTSFQRKTGYVQQQDLH 947
                 5689***************************999788889999988777644332 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.21   1.5e+02      28     183 ..     200     362 ..      47     369 .. 0.63
   2 ?    4.4   0.0      0.03        21      26      44 ..     892     910 ..     882     949 .. 0.80
   3 !    8.2   0.0    0.0021       1.5     156     201 ..    1018    1063 ..    1012    1077 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.21
                 EEEESTTSSHHHHHHHHH.....HHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HH CS
                 xxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAil.....FvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkk 121
                 +++G+ GSG s ll  i      Fv G++s+ + +  +++++ ++  +++++  ae +++f                                      
  KKY22769.1 200 VVLGRPGSGCSTLLKTIAgethgFVVGDASSINYQGISAKQMHNQ-FRGEAIYMAETDVHF-------------------------------------- 259
                 556666666666666653333335555444433333333333222.333334444444443...................................... PP

                 HHHHHHHCTT-STT..........................................................CS-HHHHHHHHHHHHHHHHCCS--SEE CS
                 xxxxxxxxxxxxxx..........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 122 evsellesagiske..........................................................lLSgGektLvalaLlfAiqkvkpaply 162
                                                                                           SgGe++ v+++      + + +pl 
  KKY22769.1 260 -------------PqltvgqtlafaakaraprdhlypdvtkemyaehmrdvmmamfgishtintrvgndfvrGVSGGERKRVSISE----AALSGSPLQ 341
                 .............0333333333333333333333333333333333333333333333445555555555556666666555543....345556666 PP

                 EECTTTTTS-HHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 163 llDeidaaLDeknvkkvaell 183
                 + D+    LD +n  ++++ l
  KKY22769.1 342 CWDNSTRGLDSANAIEFCKTL 362
                 666666666666666665555 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.03
                 EEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAi 44 
                 +ta++Gp G+GK+ lld +
  KKY22769.1 892 LTALMGPSGAGKTTLLDVL 910
                 799*************965 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0021
                  CS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  156 vkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreem 201 
                  +kp+ l +lDe  + LD +    + +ll++ + + Q i  ++++  
  KKY22769.1 1018 AKPQLLLFLDEPTSGLDSQTSWSILDLLEKLTRHGQAILCTIHQPS 1063
                  68999**********************************9998765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.013       9.1       2      51 ..     200     246 ..     199     260 .. 0.74
   2 !    8.8   0.0     0.003       2.1       3      29 ..     895     919 ..     893     989 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.013
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfk 51 
                 ++ G pG G ++l k +a e++  f+  ++s++   y+g s+k++++ f+
  KKY22769.1 200 VVLGRPGSGCSTLLKTIAGETHG-FVVGDASSIN--YQGISAKQMHNQFR 246
                 688*****************743.5566666666..66666666655553 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.003
                 EESSTTSSHHHHHHHHHHHHTHEEEEE CS
         AAA   3 lyGppGtGKTllakavakelgveflei 29 
                 l+Gp G GKT+l   +a+ + +    +
  KKY22769.1 895 LMGPSGAGKTTLLDVLATRVTMG--VV 919
                 89***************995433..33 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.32   2.3e+02       2      25 ..     200     230 ..     199     250 .. 0.76
   2 !   13.1   0.0   0.00015      0.11       3      52 ..     895     942 ..     894    1024 .. 0.62

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.32
      AAA_18   2 lltGtpGvGKttlakeLskrl.gf......g 25 
                 ++ G pG+G +tl k ++ ++ gf      +
  KKY22769.1 200 VVLGRPGSGCSTLLKTIAGEThGFvvgdasS 230
                 589*************988876777644441 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00015
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrl 52 
                 l+G++G+GKttl + L+ r  +gv++++ + +++ +++ ++   +   + 
  KKY22769.1 895 LMGPSGAGKTTLLDVLATRVTMGVVSGEALVDGRQRDTSFQR--KTGYVQ 942
                 89***************9987777777777777666666666..222222 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.065        46       6      27 ..     197     218 ..     193     229 .. 0.88
   2 !   10.8   0.1   0.00063      0.45       5      27 ..     890     912 ..     887     936 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.065
      AAA_22   6 gilvvtGesGtGKTtllrrlle 27 
                  +lvv G +G+G +tll++++ 
  KKY22769.1 197 EMLVVLGRPGSGCSTLLKTIAG 218
                 699***************9875 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00063
      AAA_22   5 agilvvtGesGtGKTtllrrlle 27 
                  ++++++G+sG+GKTtll  l+ 
  KKY22769.1 890 GTLTALMGPSGAGKTTLLDVLAT 912
                 57899************987766 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.057        41       1      35 [.     202     237 ..     202     267 .. 0.77
   2 !    8.8   0.0    0.0028         2       1      45 [.     896     940 ..     896     967 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.057
                 EE-TTSSHHHHHHHHH.HHHTEEEEEHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklv.ekygfthlsaGdllreeak 35 
                 lG PGsG +t++++++ e  gf +  a+++ ++ ++
  KKY22769.1 202 LGRPGSGCSTLLKTIAgETHGFVVGDASSINYQGIS 237
                 699************945558988777776555555 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0028
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTTS.HSSHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrggl.akarde 45 
                 +G+ G+GK+t+++ l+ ++   ++s G+ l +  +r+ + +++ ++
  KKY22769.1 896 MGPSGAGKTTLLDVLATRVTMGVVS-GEALVDGRQRDTSfQRKTGY 940
                 59**********************9.99888777666543444444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.035        25       2      21 ..     198     217 ..     197     222 .. 0.89
   2 ?    8.3   0.1    0.0027         2       3      27 ..     893     917 ..     891     926 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.035
                 CEEEEC-TTTCHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqkla 21 
                 ++++ G++GsG +tLl+ +a
  KKY22769.1 198 MLVVLGRPGSGCSTLLKTIA 217
                 5899**************98 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0027
                 EEEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaeg 27 
                  +l G++G GKTtLl  la+    g
  KKY22769.1 893 TALMGPSGAGKTTLLDVLATRVTMG 917
                 6799************999877666 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   7.9e-05     0.056      21      41 ..     892     912 ..     888     959 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.9e-05
      AAA_23  21 ltlItGpNGaGKTTildAikl 41 
                 lt++ Gp GaGKTT+ld +  
  KKY22769.1 892 LTALMGPSGAGKTTLLDVLAT 912
                 89***************9864 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.65   4.6e+02       3      25 ..     200     224 ..     198     245 .. 0.85
   2 ?   11.1   0.1    0.0005      0.36       3      31 ..     894     924 ..     892     963 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.65
      AAA_28   3 vitGgestGKTtlleaLa..argyp 25 
                 v++G +++G +tll+ +a   +g++
  KKY22769.1 200 VVLGRPGSGCSTLLKTIAgeTHGFV 224
                 899**************96434665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0005
      AAA_28   3 vitGgestGKTtlleaLaar.gypvv.pEaa 31 
                 +++G++++GKTtll  La r  + vv  Ea 
  KKY22769.1 894 ALMGPSGAGKTTLLDVLATRvTMGVVsGEAL 924
                 799***************9965556656665 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.088        63       3      25 ..     199     221 ..     197     243 .. 0.82
   2 ?    8.7   0.1    0.0016       1.2       3      23 ..     893     913 ..     891     938 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.088
                 EEEEESTTCCHHHHHHHHHCT-- CS
        cobW   3 tvltGflGsGKTtLlnhllenra 25 
                 +v+ G +GsG +tLl+++  +++
  KKY22769.1 199 LVVLGRPGSGCSTLLKTIAGETH 221
                 7999************9985544 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0016
                 EEEEESTTCCHHHHHHHHHCT CS
        cobW   3 tvltGflGsGKTtLlnhllen 23 
                 t l G+ G+GKTtLl  l ++
  KKY22769.1 893 TALMGPSGAGKTTLLDVLATR 913
                 7899***********987644 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       4.9   3.5e+03      21      33 ..     170     182 ..     158     184 .. 0.78
   2 ?    2.8   0.0      0.12        84      19      39 ..     197     217 ..     191     255 .. 0.83
   3 ?   10.5   0.1    0.0005      0.36      19      44 ..     891     916 ..     883     994 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.9
      AAA_30  21 avltGpAGtGKtt 33 
                 a++ +  GtGKt 
  KKY22769.1 170 AAVRALSGTGKTK 182
                 46788999**996 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.12
      AAA_30  19 rvavltGpAGtGKttalkalr 39 
                  + v+ G++G+G +t+lk+++
  KKY22769.1 197 EMLVVLGRPGSGCSTLLKTIA 217
                 58899*************996 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.0005
      AAA_30  19 rvavltGpAGtGKttalkalreawea 44 
                  +++l Gp G+GKtt+l +l+  ++ 
  KKY22769.1 891 TLTALMGPSGAGKTTLLDVLATRVTM 916
                 5899**************99876664 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.022        15       3      23 ..     200     220 ..     198     255 .. 0.80
   2 ?    5.2   0.0      0.03        22       3      22 ..     894     913 ..     892     949 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.022
                 EEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgek 23 
                 +++Grp +G StL++++ ge+
  KKY22769.1 200 VVLGRPGSGCSTLLKTIAGET 220
                 799**************9972 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.03
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 a++G + +GK+tL+  l  +
  KKY22769.1 894 ALMGPSGAGKTTLLDVLATR 913
                 89************999764 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0       0.1        73      30      68 ..     178     217 ..     169     246 .. 0.81
   2 ?    6.8   0.0    0.0072       5.2      41      68 ..     884     911 ..     859     919 .. 0.80
   3 ?   -3.3   0.0       8.8   6.3e+03      38      81 ..    1194    1237 ..    1186    1249 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.1
   IstB_IS21  30 ldkrkvkeLatls.fiekkenivllGpsGvGKshlaialg 68 
                 + k+k++ L++ + ++e  e +v+lG +G G s l  +++
  KKY22769.1 178 TGKTKIQILQGFDgYVEPGEMLVVLGRPGSGCSTLLKTIA 217
                 556778888775549****************999977776 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0072
   IstB_IS21  41 lsfiekkenivllGpsGvGKshlaialg 68 
                 + +++     +l+GpsG+GK+ l   l+
  KKY22769.1 884 DGWVKPGTLTALMGPSGAGKTTLLDVLA 911
                 4599999999***********9876665 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 8.8
   IstB_IS21   38 LatlsfiekkenivllGpsGvGKshlaialgveavraglsvlfv 81  
                   +t s+i +k +++l+    +G +++ + l+ ++ ++++  +f+
  KKY22769.1 1194 WRTPSYIYSKTALCLITALFIGFTFFKAQLSLQGLQNQMFAIFM 1237
                  57889999999999999999999999999999999987766555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.26   1.9e+02       2      52 ..     200     250 ..     199     256 .. 0.74
   2 ?    7.8   0.0     0.006       4.3       3      24 ..     895     916 ..     893     949 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.26
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsvys.rnpeddfwdgYtgqev 52 
                   ++ G++g G Stl k++a +  + +  +  +s+ + + ++++++++++g+++
    KKY22769.1 200 VVLGRPGSGCSTLLKTIAGETHGFVVGDA-SSINYqGISAKQMHNQFRGEAI 250
                   789*************9999887774444.4444437777777787777766 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.006
  RNA_helicase   3 lyGpsgeGKStlakeLakallk 24 
                   l Gpsg GK+tl + La++++ 
    KKY22769.1 895 LMGPSGAGKTTLLDVLATRVTM 916
                   78***************99984 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.51   3.7e+02      46      84 ..     197     235 ..     183     268 .. 0.70
   2 ?    8.3   0.0    0.0027       1.9      48      74 ..     893     919 ..     879     962 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.51
       Rad17  46 riLLisGPsGCgkstvvkvLskelgiklrewlnpvslke 84 
                 ++L++ G +G g st +k ++ e    +     +++++ 
  KKY22769.1 197 EMLVVLGRPGSGCSTLLKTIAGETHGFVVGDASSINYQG 235
                 68999**************99875444444444444444 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0027
       Rad17  48 LLisGPsGCgkstvvkvLskelgiklr 74 
                   + GPsG gk+t + vL+   ++ + 
  KKY22769.1 893 TALMGPSGAGKTTLLDVLATRVTMGVV 919
                 5689**************987765543 PP

>> PDR_assoc  Plant PDR ABC transporter associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.4       0.6   4.3e+02      33      56 ..     563     585 ..     557     593 .. 0.79
   2 ?    9.8   0.1    0.0009      0.65      31      60 ..     780     809 ..     768     814 .. 0.84
   3 ?    3.1   0.5      0.11        80      31      63 ..    1467    1498 ..    1457    1500 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.6
   PDR_assoc  33 gvgallgftiLFNilftlaLtYLn 56 
                 + gall f++L N  f  aL+ L 
  KKY22769.1 563 SRGALLFFAVLLN-GFASALEILT 585
                 569**********.5777787775 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0009
   PDR_assoc  31 WigvgallgftiLFNilftlaLtYLnplgk 60 
                 W  +g+l++ft++F + + +a +Y++  ++
  KKY22769.1 780 WRNLGILIAFTLFFMFTYLFATEYISEQKS 809
                 7889********************987655 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.11
   PDR_assoc   31 WigvgallgftiLFNilftlaLtYLnplgksqa 63  
                  W  +g l+ f+ +FNi + ++  +L  + k++ 
  KKY22769.1 1467 WRNFGLLFVFI-IFNIAMAVFIYWLARVPKKNN 1498
                  66788899985.6*********99998777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       874  (0.0487478); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 1.09u 0.34s 00:00:01.43 Elapsed: 00:00:00.54
# Mc/sec: 8498.69
//
Query:       KKY22770.1  [L=928]
Description: putative heat shock protein hsp98 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-47  161.4   0.0      9e-46  156.1   0.0    2.8  2  AAA_2            AAA domain (Cdc48 subfamily)
    5.4e-33  113.0   1.9    5.4e-33  113.0   1.9    4.4  4  AAA_lid_9        AAA lid domain
    8.8e-27   94.1   0.0    1.9e-14   54.2   0.0    3.1  2  AAA              ATPase family associated with various cellul
    4.5e-24   84.3   2.0    7.1e-24   83.7   0.3    2.3  1  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    9.8e-16   58.0   0.4    8.4e-10   38.8   0.0    3.4  2  AAA_5            AAA domain (dynein-related subfamily)
    3.5e-13   50.3   5.1    1.5e-06   28.7   0.1    4.9  3  AAA_16           AAA ATPase domain
    3.5e-13   50.0   0.4    4.5e-05   23.7   0.0    4.6  3  AAA_22           AAA domain
    7.8e-10   38.7   0.0    5.9e-06   26.1   0.0    2.5  2  Sigma54_activat  Sigma-54 interaction domain
    2.4e-07   30.8   1.5      0.029   14.5   0.1    4.1  3  Clp_N            Clp amino terminal domain, pathogenicity isl
    1.4e-06   28.9   1.7      0.053   14.1   0.0    4.3  3  AAA_18           AAA domain
    1.7e-06   27.7   0.0     0.0059   16.1   0.0    2.5  2  AAA_7            P-loop containing dynein motor region
    1.8e-06   27.8   0.0      0.062   13.0   0.0    2.9  2  IstB_IS21        IstB-like ATP binding protein
    2.6e-06   27.5   0.0        0.1   12.6   0.0    2.9  2  AAA_14           AAA domain
    8.5e-06   25.3   0.1       0.14   11.5   0.0    3.5  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
    1.1e-05   25.6   0.0       0.26   11.5   0.0    3.2  2  AAA_33           AAA domain
    1.6e-05   24.9   3.8       0.06   13.3   0.2    4.4  3  ATPase_2         ATPase domain predominantly from Archaea
      3e-05   24.3   0.4       0.49   10.6   0.0    3.6  3  AAA_28           AAA domain
    4.7e-05   22.6   0.2     0.0016   17.6   0.0    3.0  2  T2SSE            Type II/IV secretion system protein
    5.1e-05   23.6   0.0       0.37   11.2   0.0    2.6  2  RNA_helicase     RNA helicase
    0.00012   21.8   0.0       0.83    9.3   0.0    3.1  2  AAA_30           AAA domain
    0.00015   21.7   0.0        0.9    9.4   0.0    3.3  3  AAA_3            ATPase family associated with various cellul
    0.00022   21.0   0.0       0.46   10.2   0.0    2.9  2  AAA_24           AAA domain
    0.00023   20.9   1.7          3    7.6   0.9    4.3  3  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00032   20.7   0.0        0.4   10.7   0.0    2.6  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    0.00035   21.1   2.8       0.51   10.8   0.0    4.2  5  ABC_tran         ABC transporter
     0.0004   20.3   0.0       0.42   10.5   0.0    2.9  2  RsgA_GTPase      RsgA GTPase
    0.00048   20.5   0.1       0.29   11.5   0.1    3.4  2  AAA_19           AAA domain
     0.0009   18.9   0.0       0.97    9.2   0.0    2.7  2  AAA_29           P-loop containing region of AAA domain
     0.0012   18.9   0.0        1.1    9.3   0.0    4.2  4  ResIII           Type III restriction enzyme, res subunit
      0.002   18.2   0.0      0.023   14.8   0.0    2.5  2  Torsin           Torsin
      0.003   17.7   0.0        1.9    8.7   0.0    2.6  2  Roc              Ras of Complex, Roc, domain of DAPkinase
     0.0034   17.3   0.0       0.37   10.7   0.0    2.8  2  NACHT            NACHT domain
     0.0047   16.2   0.0       0.56    9.5   0.0    2.7  2  Zeta_toxin       Zeta toxin
     0.0071   16.0   0.0        1.8    8.1   0.0    2.7  2  SRP54            SRP54-type protein, GTPase domain
     0.0076   16.2   0.0        0.2   11.6   0.0    2.8  2  NTPase_1         NTPase
     0.0099   15.5   0.3        1.7    8.2   0.0    3.0  2  AAA_25           AAA domain
  ------ inclusion threshold ------
       0.02   14.9   0.0        6.2    6.7   0.0    2.6  2  Rad17            Rad17 P-loop domain
      0.076   12.8   0.0        8.9    6.0   0.0    2.6  2  ATP_bind_1       Conserved hypothetical ATP binding protein
      0.097   12.7   0.1         31    4.6   0.0    3.4  3  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
       0.13   12.0   0.0        6.8    6.4   0.0    2.5  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
       0.36   11.3   0.0       0.36   11.3   0.0    5.2  4  AAA_23           AAA domain
        1.2    9.1   3.6        7.6    6.5   0.1    3.5  3  GIT_CC           GIT coiled-coil Rho guanine nucleotide excha
        1.4    6.8   5.9       0.14   10.0   1.5    1.5  2  V_ATPase_I       V-type ATPase 116kDa subunit family
        3.3    7.0  16.4       0.36   10.2  10.8    2.2  2  GAS              Growth-arrest specific micro-tubule binding


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.45   1.8e+02       6      77 ..     223     301 ..     218     331 .. 0.59
   2 !  156.1   0.0   2.2e-48     9e-46       5     170 ..     633     794 ..     629     795 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.45
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EEEEETG CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEi 77 
                   l+g+ gvGkt + + la+ +  + + + + + a +ll   +v +lv+  +   ++  + +  G            ++++DEi
  KKY22770.1 223 PVLIGEPGVGKTTVVEGLAQRIV-NADVP-ANLAACKLLS-LDVGSLVAGSKYRGEFEERMK--GvlkeiedskemvVLFVDEI 301
                 56889999999999999998775.33333.3333333333.344555544443333333222..23355555555557777777 PP

  == domain 2  score: 156.1 bits;  conditional E-value: 2.2e-48
                 -EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EEEEETGGG------------ CS
       AAA_2   5 silllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessgadvS 91 
                 s+l++gp+g+Gkt+l+kalae+lf +++k++ir+d+se++e    +h++sr igappgyvg++ gG            i+l+DE++K+++         
  KKY22770.1 633 SFLFCGPSGTGKTLLTKALAEFLF-DDSKAMIRFDMSEYQE----RHSLSRMIGAPPGYVGHDAGGqltealrrrpfsILLFDEVEKAAK--------- 717
                 89**********************.****************....*********************************************......... PP

                 -HHHHHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-STTTTSGGG--HHHHHHTT--HHHHTT--E CS
       AAA_2  92 regVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeeveeelkkglipEllgRlpe 170
                   +V+++LLq++++g++td qgr vd +n++++mt+++g++  ++++  + + + +++e v+ +l++++ pE+l+R+  
  KKY22770.1 718 --EVLTVLLQLMDDGRITDGQGRVVDARNCIVVMTSNLGAEYLARQNAPDGKIDPTTRELVMTSLRNYFLPEFLNRISS 794
                 ..*******************************************99998**************************986 PP

>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.39   1.6e+02      26      46 ..      11      31 ..       7      37 .. 0.93
   2 ?   -1.6   0.2       6.4   2.6e+03      52      82 ..     154     186 ..     142     200 .. 0.56
   3 !  113.0   1.9   1.3e-35   5.4e-33       1     103 [.     364     466 ..     364     467 .. 0.97
   4 ?    2.0   0.5      0.48     2e+02      64      97 ..     487     520 ..     479     526 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.39
   AAA_lid_9 26 dealeaavklSkrYisdrflP 46
                ++al++a+ l+++Y +++ lP
  KKY22770.1 11 QQALSQAAALAEQYSHSQILP 31
                689**************9999 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 6.4
   AAA_lid_9  52 llDeaaarvrlkk..eskpeeleklekelakle 82 
                 l+D a  ++r +k  +sk+++ e+ +++l+k +
  KKY22770.1 154 LIDSAIQQIRGTKrvDSKTADAEQENENLKKFT 186
                 566666555544411233344444444444444 PP

  == domain 3  score: 113.0 bits;  conditional E-value: 1.3e-35
   AAA_lid_9   1 seeetieiLrglkekyekhHgvkisdealeaavklSkrYisdrflPdkAIDllDeaaarvrlkkeskpeeleklekelaklekekealekeeekekaer 99 
                 s++eti+iLrglke+ye hHgv+i d a+++a++l++rY++ r+lPd+A+Dl+Deaaa+vr++++s+pe l+++e++l++l+ e +al +e++++++ r
  KKY22770.1 364 SIQETISILRGLKERYEVHHGVNILDGAIVSAATLAARYLTARRLPDSAVDLIDEAAAAVRVARDSQPEALDNMERRLRQLQIEIHALDREKDSASKIR 462
                 689*******************************************************************************************99999 PP

   AAA_lid_9 100 lkel 103
                 l+e+
  KKY22770.1 463 LEEA 466
                 9875 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.48
   AAA_lid_9  64 keskpeeleklekelaklekekealekeeekeka 97 
                 ++++ +e+++++ +l++l+ ++e++e++ +   a
  KKY22770.1 487 EKQRSKEIQEAKIKLDQLKVKREEAERSGDLMTA 520
                 5667789****************99998876555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   4.6e-17   1.9e-14       2     112 ..     224     342 ..     223     362 .. 0.77
   2 !   36.4   0.0   1.5e-11   6.3e-09       2     111 ..     635     753 ..     634     769 .. 0.84

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 4.6e-17
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnq 88 
                 +l+G pG+GKT++++ +a+ +            ++l++++ +l+  sky ge e+++++++ke++ +++ ++lf+DEi+ l+++   ++ e +++++n 
  KKY22770.1 224 VLIGEPGVGKTTVVEGLAQRIvnadvpanlaACKLLSLDVGSLVagSKYRGEFEERMKGVLKEIEDSKEMVVLFVDEIHLLMGAG--ASGEGGMDAANL 320
                 599*****************54443333333477*********99899****************999867*************99..777778888888 PP

                 HHHHHHHTTTSSSTEEEEEEESS...G CS
         AAA  89 Llteldgvkkkeskvivigatnr...p 112
                 L ++l + +       +igat+     
  KKY22770.1 321 LKPMLARGQL-----HCIGATTLaeyR 342
                 8888877766.....699999885532 PP

  == domain 2  score: 36.4 bits;  conditional E-value: 1.5e-11
                 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS............STTHHHH.HHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHHH CS
         AAA   2 llyGppGtGKTllakavakel...gvefleisgsellsk............yvgesek.kirelfkeakekakp.silfiDEidalaksrsgseseeee 83 
                 l++Gp GtGKTll ka+a+ l   +  ++++++se  +             yvg+ +  ++ e +++    + p sil++DE+++ ak+          
  KKY22770.1 635 LFCGPSGTGKTLLTKALAEFLfddSKAMIRFDMSEYQERhslsrmigappgYVGHDAGgQLTEALRR----R-PfSILLFDEVEKAAKEV--------- 719
                 89******************97766889999999999668999999999998887765145555543....3.779**********8888......... PP

                 HHHHHHHHHHHHTTTS........SSTEEEEEEESS CS
         AAA  84 rvvnqLlteldgvkkk........eskvivigatnr 111
                   + +Ll+ +d+ +           +++iv++++n 
  KKY22770.1 720 --LTVLLQLMDDGRITdgqgrvvdARNCIVVMTSNL 753
                 ..************9999999999778999999997 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.3   1.7e-26   7.1e-24       1      78 [.     801     880 ..     801     883 .. 0.95

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 1.7e-26
                    SCHHHHHHHHHHHHHHHHHHSCT..TTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSSTTSE CS
  ClpB_D2-small   1 LtkeelkkIvdlalkklekrlke..rgvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelkegdt 78 
                    Lt++e++kIvdl++ +++krl++  r+v+++++de++d+l ++gy+p+yGARpL+r+i++e++++la +il+g++++g+ 
     KKY22770.1 801 LTRREIRKIVDLRISEIQKRLEAndRKVTIQCSDEVKDYLGSAGYSPAYGARPLQRLIEKEVLNRLAVLILRGQIRDGEV 880
                    899******************644599*************************************************9986 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     3e-05     0.012       3      26 ..     224     248 ..     222     304 .. 0.78
   2 !   38.8   0.0   2.1e-12   8.4e-10       2     122 ..     634     753 ..     633     765 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3e-05
                 EEE--SSSSHHHHHHHGGGGB.S-- CS
       AAA_5   3 lLvGppGtgKselaerlaaal.nre 26 
                 +L+G+pG+gK++++e la+++ n+ 
  KKY22770.1 224 VLIGEPGVGKTTVVEGLAQRIvNAD 248
                 79*****************998544 PP

  == domain 2  score: 38.8 bits;  conditional E-value: 2.1e-12
                 EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--.TT--HHHHH--B--...........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nreveyvqlt.rdtteedlkgrreikngttslvd..splvraar..egeilvlDEveraesevlnsLlslleerrl 94 
                 +l  Gp+GtgK+ l++ la++l  ++  ++ +  + ++e++ + r+  ++ +++ +d  + l++a r    +il++DEve+a +evl +Ll+l+++ r+
  KKY22770.1 634 FLFCGPSGTGKTLLTKALAEFLfDDSKAMIRFDmSEYQERHSLSRMIGAPPGYVGHDagGQLTEALRrrPFSILLFDEVEKAAKEVLTVLLQLMDDGRI 732
                 6889******************97777777664133444444444443444444444338999999987889*************************** PP

                 E..-SSSEEE---......-EEEEEESS CS
       AAA_5  95 lleeggelvkaknddllerfrviatanp 122
                    +g+++v  +++       v++t+n 
  KKY22770.1 733 T--DGQGRVVDARN-----CIVVMTSNL 753
                 *..99999998887.....899999986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   3.8e-09   1.5e-06       2      52 ..     201     248 ..     200     329 .. 0.86
   2 !   16.9   0.0   1.6e-05    0.0065       3      51 ..     605     658 ..     603     683 .. 0.72
   3 ?    2.3   0.1      0.49     2e+02     131     162 ..     700     730 ..     689     748 .. 0.75

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 3.8e-09
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdg 52 
                 ++GReee++++ ++l+r  ++ p   +l+Ge+GvGK+++v+ l++++  ++
  KKY22770.1 201 VIGREEEIRRVIRILSRRTKNNP---VLIGEPGVGKTTVVEGLAQRIVNAD 248
                 78*********999998887766...899**************99998775 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.6e-05
      AAA_16   3 vGReeeleqLlsalervrsgrp.....elvllsGesGvGKsslvrellralekd 51 
                 vG +e +e + +a++  rsg +     ++ l+ G+sG+GK+ l ++l++ l +d
  KKY22770.1 605 VGQREAVESVSNAIRLQRSGLSnpnqpPSFLFCGPSGTGKTLLTKALAEFLFDD 658
                 677777777777777444444344666*********************988777 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.49
      AAA_16 131 srderp.lvlvlDdlqwadeaslqllaaLlrll 162
                 +r  rp  +l++D++++a  + l++l +L++++
  KKY22770.1 700 RR--RPfSILLFDEVEKAAKEVLTVLLQLMDDG 730
                 33..44489****************99999874 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.6e-06    0.0015       4     120 ..     219     327 ..     216     345 .. 0.66
   2 ?    0.1   0.1       2.2   9.1e+02      38     112 ..     353     437 ..     333     452 .. 0.56
   3 !   23.7   0.0   1.1e-07   4.5e-05       8     118 ..     634     729 ..     629     741 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.6e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseell.ealeqalraravielliiDEaq 101
                 t++  v++Ge+G+GKTt+++ l+++ +++      +++      +++   k l  ++ + +  ++ +  ++ ee +   l +  +++ + ++l +DE++
  KKY22770.1 219 TKNNPVLIGEPGVGKTTVVEGLAQRIVNA------DVP------ANLAACKLLSLDVGSLVAGSKYR--GEFEERMkGVLKEIEDSKEM-VVLFVDEIH 302
                 778889******************98532......222......22224445556666666665555..45555551555555555555.999999999 PP

      AAA_22 102 hlr....s....eealeeLrsllnlsr 120
                  l+    s    ++a + L+ +l   r
  KKY22770.1 303 LLMgagaSgeggMDAANLLKPMLA--R 327
                 998776525567888888776665..4 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 2.2
      AAA_22  38 erpevvfvtlpsstsskdllrellralglelka..erlsseell..ealeqalrarav..ielliiDEaqh.lr....s.eealeeL 112
                 +r ++v+v+ ps  +  ++lr l + +++ +       +   +   ++ +++l ar+    ++ +iDEa   +r    s +eal + 
  KKY22770.1 353 RRFQQVLVKEPSIQETISILRGLKERYEVHHGVniL--DGAIVSaaTLAARYLTARRLpdSAVDLIDEAAAaVRvardSqPEALDNM 437
                 666777777777777777777777777765554331..2222222134445555555577788889998886657654254444444 PP

  == domain 3  score: 23.7 bits;  conditional E-value: 1.1e-07
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevv..fvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlr 104
                  + +G+sGtGKT+l + l+e l         +++ +  ++++++       ++ l r +g +  +     ++   +l++alr+r   ++l+ DE+++  
  KKY22770.1 634 FLFCGPSGTGKTLLTKALAEFLF--------DDSKAmiRFDMSEYQ----ERHSLSRMIGAPPGY---VGHDAGGQLTEALRRRPF-SILLFDEVEKA- 715
                 678******************94........444331266665555....456667777877778...889999************.**********9. PP

      AAA_22 105 seealeeLrsllnl 118
                  +e+l+ L +l+++
  KKY22770.1 716 AKEVLTVLLQLMDD 729
                 9*******999996 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0012      0.51       2     105 ..     202     304 ..     201     309 .. 0.63
   2 !   26.1   0.0   1.5e-08   5.9e-06      22     138 ..     631     747 ..     604     762 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0012
                      ---SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSS.STTTSS-BE.HHHHHTT CS
  Sigma54_activat   2 igesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGa.FtGAekekk.Glfekad 93 
                      ig++e+++++++ +++ +k+  +v + Ge G+GK+++ + + ++  +++ p    n aa+  +ll+ ++   ++G+ + G  +e++ G +++ +
       KKY22770.1 202 IGREEEIRRVIRILSRRTKN-NPV-LIGEPGVGKTTVVEGLAQRIVNADVPA---NLAAC--KLLSLDVGSLVAGSkYRGEFEERMkGVLKEIE 288
                      77888888888887775443.455.56************9999888777654...44444..34444444444444355555554447666655 PP

                      TS....EEEEETGGGS CS
  Sigma54_activat  94 gG....tlfLDeigel 105
                      ++    +lf+Dei+ l
       KKY22770.1 289 DSkemvVLFVDEIHLL 304
                      5433336888888865 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 1.5e-08
                      SS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE..HHHHHTTTSEEEEETGGGS-HHHHHHH CS
  Sigma54_activat  22 dlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk..GlfekadgGtlfLDeigelplelQekL 113
                      + s l  G sGtGK+ll +a+ e    ++k ++++++++++e+   s++ G   G + G ++  +   ++++   ++l++De+++   e+ + L
       KKY22770.1 631 PPSFLFCGPSGTGKTLLTKALAEFLFDDSKAMIRFDMSEYQERHSLSRMIGAPPG-YVGHDAGGQltEALRRRPFSILLFDEVEKAAKEVLTVL 723
                      467899**********************************************999.66655433323667777789****************** PP

                      HHHHHHSEEESBTSSSEEE--EEEE CS
  Sigma54_activat 114 lrvlqegevervGsskeikvdvrii 138
                      l+++++g+++  G+ + +++   i+
       KKY22770.1 724 LQLMDDGRITD-GQGRVVDARNCIV 747
                      *******9986.4444444433333 PP

>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1     0.019       7.6       1      24 [.      17      40 ..      17      42 .. 0.93
   2 ?    5.9   0.0     0.034        14      27      51 ..      62      86 ..      59      87 .. 0.91
   3 !   14.5   0.1   7.1e-05     0.029       1      50 [.     113     161 ..     113     164 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.019
                HHHHHHHTTCSSB-HHHHHHHHHH CS
       Clp_N  1 AqelAkslghqyistEHLLlALle 24
                A +lA ++ h++i + HL  +L++
  KKY22770.1 17 AAALAEQYSHSQILPIHLASVLFD 40
                789****************99986 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.034
                TSHHHHHHHHTTSSHHHHHHHHHHH CS
       Clp_N 27 dGlaarlLkkaGvdldalrkaiekl 51
                ++l++++ ++a++d++ l +ai+k 
  KKY22770.1 62 QSLFRQVVERAHGDPQLLNRAINKQ 86
                689*******************985 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 7.1e-05
                 HHHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHH.HHHHHH CS
       Clp_N   1 AqelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldal.rkaiek 50 
                 A++l+k  +++y+ ++HL   L++++  + +++L++a++   +l  +ai++
  KKY22770.1 113 AHDLSKTQKDSYVAVDHLITCLAQDK--DVQKALAEANIPNTKLiDSAIQQ 161
                 89**********************99..*********99665541445555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       7.2   2.9e+03      37      70 ..     132     175 ..     106     192 .. 0.63
   2 !   14.1   0.0   0.00013     0.053       3      48 ..     225     289 ..     224     314 .. 0.76
   3 !   10.7   0.0    0.0014      0.58       3      26 ..     636     657 ..     635     751 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 7.2
      AAA_18  37 lllevdpe...aldeskrldedkldklldaleenss.......a 70 
                 ++l +d++   al e ++ +++  d++++++++  +       a
  KKY22770.1 132 TCLAQDKDvqkALAEANIPNTKLIDSAIQQIRGTKRvdsktadA 175
                 33334444777778888888888888888887776655555433 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 0.00013
      AAA_18   3 ltGtpGvGKttlakeLskrl.gf............gvnlrdvakenglllevdpe......alde 48 
                 l G pGvGKtt+ + L++r  +             +  ++++++ + ++ e+++       ++++
  KKY22770.1 225 LIGEPGVGKTTVVEGLAQRIvNAdvpanlaackllSLDVGSLVAGSKYRGEFEERmkgvlkEIED 289
                 8899*************997444777777888888888888888888888888875554444444 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.0014
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgv 26 
                  +G++G+GKt l+k+L++ l   +
  KKY22770.1 636 FCGPSGTGKTLLTKALAEFL--FD 657
                 79**************8865..33 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0026       1.1      32      61 ..     219     248 ..     206     305 .. 0.64
   2 !   16.1   0.0   1.5e-05    0.0059      35      82 ..     633     680 ..     618     683 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0026
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkldkek 61 
                  k++ +l+G+ G+GKt++++ l +++ + +
  KKY22770.1 219 TKNNPVLIGEPGVGKTTVVEGLAQRIVNAD 248
                 45667899************9887766444 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 1.5e-05
       AAA_7  35 pvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdii 82 
                 ++l++Gp+GtGKt+++k l + l +++  ++ + +s + + ++l ++i
  KKY22770.1 633 SFLFCGPSGTGKTLLTKALAEFLFDDSKAMIRFDMSEYQERHSLSRMI 680
                 589********************99*************9999999988 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00047      0.19      45      76 ..     218     249 ..     203     305 .. 0.83
   2 !   13.0   0.0   0.00015     0.062      49      72 ..     633     656 ..     605     674 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00047
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavragl 76 
                 ++k+n vl+G +GvGK+ +   l+++ v+a++
  KKY22770.1 218 RTKNNPVLIGEPGVGKTTVVEGLAQRIVNADV 249
                 578999*******************9999876 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00015
   IstB_IS21  49 nivllGpsGvGKshlaialgveav 72 
                 +++++GpsG+GK+ l+ al+    
  KKY22770.1 633 SFLFCGPSGTGKTLLTKALAEFLF 656
                 6899***************97655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00026       0.1       6      80 ..     224     308 ..     220     360 .. 0.73
   2 !   11.5   0.0   0.00056      0.23       8      90 ..     637     730 ..     631     740 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00026
      AAA_14   6 vitGaRrvGKTtllkqlikell.....vkkesilyinldderd...kkla.dpekllelileklke.ekktylflDEiqevpewe 80 
                 v+ G   vGKTt+++ l+++       ++   +  ++ld  ++   +k++ ++e+ ++ +l+++++ +++ +lf DEi+ + ++ 
  KKY22770.1 224 VLIGEPGVGKTTVVEGLAQRIVnadvpANLAACKLLSLDVGSLvagSKYRgEFEERMKGVLKEIEDsKEMVVLFVDEIHLLMGAG 308
                 5677779**********9888888766555555566666655566633443566667777777544479999*******985544 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00056
      AAA_14   8 tGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe..............kllelileklkeekktylflDEiqev.pewekalkslvdeg 90 
                  G+  +GKT l k l++ l+ +++ ++ +++ + +++ +                  +l e++++    +  ++l++DE+ ++ +e+ ++l +l+d+g
  KKY22770.1 637 CGPSGTGKTLLTKALAEFLFDDSKAMIRFDMSEYQERHSLSRMigappgyvghdaggQLTEALRR----RPFSILLFDEVEKAaKEVLTVLLQLMDDG 730
                 58999**********98888667777777777766654333225444555555222233333333....34567******986488999999999988 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.015       6.3      10      49 ..     207     247 ..     198     276 .. 0.71
   2 !   11.5   0.0   0.00034      0.14      25      52 ..     634     661 ..     631     687 .. 0.77
   3 ?    2.9   0.0      0.15        60     109     136 ..     706     733 ..     691     771 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.015
  Mg_chelatase  10 eakralei.aaaGgHnlllvGppGsGKtmlakrlpsllppl 49 
                   e +r+++i +   + n +l+G pG GKt + + l++ + + 
    KKY22770.1 207 EIRRVIRIlSRRTKNNPVLIGEPGVGKTTVVEGLAQRIVNA 247
                   445666652345567889***********998887655555 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00034
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsllpplsee 52 
                   +l++Gp+G+GKt+l k+l++ l + s++
    KKY22770.1 634 FLFCGPSGTGKTLLTKALAEFLFDDSKA 661
                   79*****************999765543 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.15
  Mg_chelatase 109 vLfLDElpefkrkvlevLRePledgevt 136
                   +L++DE+ +  ++vl vL + ++dg++t
    KKY22770.1 706 ILLFDEVEKAAKEVLTVLLQLMDDGRIT 733
                   899**********************986 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0015      0.59       4      22 ..     225     243 ..     224     295 .. 0.90
   2 !   11.5   0.0   0.00063      0.26       3      21 ..     635     653 ..     634     682 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0015
      AAA_33   4 lvGlpGsGKstlaerllkk 22 
                 l+G pG+GK+t++e+l+++
  KKY22770.1 225 LIGEPGVGKTTVVEGLAQR 243
                 89**************975 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00063
      AAA_33   3 llvGlpGsGKstlaerllk 21 
                 l++G++G+GK+ l + l++
  KKY22770.1 635 LFCGPSGTGKTLLTKALAE 653
                 89************99986 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.2   0.00015      0.06       4      43 ..     204     243 ..     202     249 .. 0.90
   2 ?    3.7   0.0      0.12        49     102     136 ..     276     310 ..     260     382 .. 0.70
   3 ?    5.4   0.0     0.038        15      20      70 ..     630     681 ..     618     731 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00015
    ATPase_2   4 RekelkeleeilerepneiyfiYGpegsGKtaLlkeiien 43 
                 Re+e++++ +il+r +++  ++ G  g+GKt+++  ++++
  KKY22770.1 204 REEEIRRVIRILSRRTKNNPVLIGEPGVGKTTVVEGLAQR 243
                 ********************************99877765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.12
    ATPase_2 102 vfkaielllekikkkgkkiiiiiDelqklidlgln 136
                  ++ ++ +l++i++++  +++++De+  l   g  
  KKY22770.1 276 FEERMKGVLKEIEDSKEMVVLFVDEIHLLMGAGAS 310
                 57789999*******999*******9988855554 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.038
    ATPase_2  20 neiyfiY.GpegsGKtaLlkeiienledkdkyviyyialreesiskldefie 70 
                 +++ f++ Gp g GKt L k ++e l d +k  i ++  + ++ ++l+++i+
  KKY22770.1 630 QPPSFLFcGPSGTGKTLLTKALAEFLFDDSKAMIRFDMSEYQERHSLSRMIG 681
                 45556555****************9988888777777766666677777766 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0    0.0012      0.49       3      22 ..     224     243 ..     222     255 .. 0.86
   2 ?   -1.1   0.3       4.9     2e+03      18      69 ..     397     451 ..     393     461 .. 0.63
   3 !    9.1   0.0    0.0034       1.4       3      21 ..     635     653 ..     633     667 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0012
      AAA_28   3 vitGgestGKTtlleaLaar 22 
                 v++G ++ GKTt++e La+r
  KKY22770.1 224 VLIGEPGVGKTTVVEGLAQR 243
                 89****************98 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 4.9
      AAA_28  18 aLaar..gypvvpEaareileeklakgedalpwv.edllafaervleeqleeeaa 69 
                  Laar    + +p++a ++++e +a  + a +++ e l ++++r+ + q+e +a 
  KKY22770.1 397 TLAARylTARRLPDSAVDLIDEAAAAVRVARDSQpEALDNMERRLRQLQIEIHAL 451
                 5666644445567778888888877777666666666666666666666666554 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0034
      AAA_28   3 vitGgestGKTtlleaLaa 21 
                  + G+++tGKT l++aLa+
  KKY22770.1 635 LFCGPSGTGKTLLTKALAE 653
                 689**************97 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.37   1.5e+02     115     154 ..     194     245 ..      98     251 .. 0.65
   2 !   17.6   0.0   3.9e-06    0.0016      57     205 ..     501     708 ..     445     721 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.37
       T2SSE 115 k...........ekiaevlrkavr.erglilvsGgTgsGKttllyallkein 154
                 +           e+i++v+r   r ++ + ++ G  g GKtt++  l + i 
  KKY22770.1 194 RegkidpvigreEEIRRVIRILSRrTKNNPVLIGEPGVGKTTVVEGLAQRIV 245
                 133355666666666666665432156788999*********9988877765 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 3.9e-06
       T2SSE  57 lakldiseerplqdarlpekgvrlrvvllPvvagealviRkksakeltlddlgaeealk........................................ 115
                 l +l++++e+   ++ l+ ++ +l + ++P +++    + +++ +  ++++ + +++                                          
  KKY22770.1 501 LDQLKVKREEAERSGDLM-TASDLTYYAIPDTEKRIHFLEQEKLR-ADFENAQRSGSSGeplvtdavgpdqineivarwtgipvtrlkttekdkllhme 597
                 555566666666666666.66666666666655544444422222.23444444443334445555556666666666666666666666666666666 PP

       T2SSE 116 .....................ekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderivtvEDpvEiqleganqvqlnak..kakvtfadl 191
                                        +++ l+++ ++  ++l+ G+ g+GKt l+ al +++ ++  + ++  D  E+q ++     + a    ++ ++   
  KKY22770.1 598 rhlgklvvgqreavesvsnaiRLQRSGLSNP-NQPPSFLFCGPSGTGKTLLTKALAEFLFDD-SKAMIRFDMSEYQERHSLSRMIGAPpgYVGHDAGGQ 694
                 6666666666666666666666666777778.77789*****************99999999.7777778*******99988888777779999999** PP

       T2SSE 192 lraaLRlrPDrimv 205
                 l +aLR+rP  i++
  KKY22770.1 695 LTEALRRRPFSILL 708
                 *********87765 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0     0.003       1.2       3      24 ..     225     246 ..     224     256 .. 0.89
   2 !   11.2   0.0   0.00091      0.37       2      26 ..     635     659 ..     634     677 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.003
  RNA_helicase   3 lyGpsgeGKStlakeLakallk 24 
                   l G++g+GK+t+++ La+++ +
    KKY22770.1 225 LIGEPGVGKTTVVEGLAQRIVN 246
                   78***************99974 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00091
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl 26 
                   +++Gpsg+GK++l+k La+ l +++
    KKY22770.1 635 LFCGPSGTGKTLLTKALAEFLFDDS 659
                   69**************998877555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0     0.002      0.83      20      45 ..     222     247 ..     207     303 .. 0.82
   2 !    8.8   0.0     0.003       1.2      24     114 ..     637     729 ..     632     734 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.002
      AAA_30  20 vavltGpAGtGKttalkalreaweaa 45 
                   vl G +G GKtt++++l++ + +a
  KKY22770.1 222 NPVLIGEPGVGKTTVVEGLAQRIVNA 247
                 4689**************97765544 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.003
      AAA_30  24 tGpAGtGKttalkalreaweaaggrviglAptgkaAkv.Laeelgi.eastiakllkrlkgrarlepgtllivDEagmvdtkqlaallkaaek 114
                  Gp GtGKt + kal+e + ++ + +i +  ++ + +  L++ +g+ +++  +    +l+++ r +p ++l+ DE+  ++ + l+ ll+ +++
  KKY22770.1 637 CGPSGTGKTLLTKALAEFLFDDSKAMIRFDMSEYQERHsLSRMIGApPGYVGHDAGGQLTEALRRRPFSILLFDEVEKAAKEVLTVLLQLMDD 729
                 69***************9999977777777776665555999999867788888888888777777889999999999998888888887765 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.017       6.9       4      27 ..     225     249 ..     223     293 .. 0.68
   2 ?    1.1   0.0      0.84   3.4e+02       5      23 ..     637     655 ..     634     667 .. 0.79
   3 !    9.4   0.0    0.0022       0.9      64     111 ..     705     752 ..     697     770 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.017
       AAA_3   4 legvPGlaktllvkalakal.dlef 27 
                 l g PG++kt++v+ la+ + ++++
  KKY22770.1 225 LIGEPGVGKTTVVEGLAQRIvNADV 249
                 6789*************86514555 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.84
       AAA_3   5 egvPGlaktllvkalakal 23 
                  g  G++ktll kala+ l
  KKY22770.1 637 CGPSGTGKTLLTKALAEFL 655
                 5678************987 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0022
       AAA_3  64 nllladeinrappktqsalleameerqvtvegethklpepflvlatqn 111
                 ++ll de+++a+  + + ll+ m++ ++t ++ +    ++ +v+ t n
  KKY22770.1 705 SILLFDEVEKAAKEVLTVLLQLMDDGRITDGQGRVVDARNCIVVMTSN 752
                 589**************************8877776677777777777 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0011      0.46       3      31 ..     221     249 ..     219     305 .. 0.69
   2 !    7.7   0.0    0.0064       2.6       4      30 ..     633     658 ..     630     733 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0011
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfidt 31 
                 ++ +++G++g+GKTt++  l ++++  d+
  KKY22770.1 221 NNPVLIGEPGVGKTTVVEGLAQRIVNADV 249
                 56699************999777665555 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0064
      AAA_24   4 kiliyGpsgiGKTtlakelgpkplfid 30 
                 ++l  Gpsg+GKT l k l  ++lf d
  KKY22770.1 633 SFLFCGPSGTGKTLLTKAL-AEFLFDD 658
                 56789*************9.6666543 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.9    0.0074         3      36      96 ..     223     304 ..     194     308 .. 0.52
   2 ?    4.9   0.0      0.05        21      11      56 ..     606     654 ..     599     664 .. 0.69
   3 ?    0.9   0.0      0.82   3.3e+02      84     113 ..     703     732 ..     690     750 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0074
      RuvB_N  36 vllyGpPGlGkttlakiiak.....elgvklkit...s...gPvl.......ekagdlaalltnleekd...vlfideihrl 96 
                  +l+G PG+Gktt+ + +a+     ++ ++l +    s   g  +       e +  + ++l+++e+++   vlf+deih l
  KKY22770.1 223 PVLIGEPGVGKTTVVEGLAQrivnaDVPANLAACkllSldvGSLVagskyrgEFEERMKGVLKEIEDSKemvVLFVDEIHLL 304
                 4678999999999876555410000444443322111111122221111111223346667766654322337777777765 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.05
      RuvB_N  11 gqekvkeklkifieaakk...reealdhvllyGpPGlGkttlakiiake 56 
                 gq++  e+++ +i+  ++     ++    l++Gp G Gkt l+k +a+ 
  KKY22770.1 606 GQREAVESVSNAIRLQRSglsNPNQPPSFLFCGPSGTGKTLLTKALAEF 654
                 666666666555544433111344555789*************999875 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.82
      RuvB_N  84 ekdvlfideihrlsraveevlysamedfrl 113
                 +  +l+ de+ + +++v  vl + m+d r+
  KKY22770.1 703 PFSILLFDEVEKAAKEVLTVLLQLMDDGRI 732
                 457999*********************887 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00098       0.4       4      43 ..     205     244 ..     202     251 .. 0.84
   2 ?    7.1   0.0     0.012       5.1      22      43 ..     634     655 ..     598     663 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00098
                 HHHHHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE   4 eeetealgkklakalgdvilLeGdLGaGKTtlvrglakal 43 
                 eee++++ + l + +++  +L G+ G+GKTt v gla+ +
  KKY22770.1 205 EEEIRRVIRILSRRTKNNPVLIGEPGVGKTTVVEGLAQRI 244
                 67888888888887888899*****************987 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.012
                 EEEEESTTSSHHHHHHHHHHHT CS
        TsaE  22 ilLeGdLGaGKTtlvrglakal 43 
                 +l+ G+ G+GKT l+++la+ l
  KKY22770.1 634 FLFCGPSGTGKTLLTKALAEFL 655
                 8899**************9866 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       9.9     4e+03      52      80 ..     122     160 ..      72     190 .. 0.61
   2 ?    6.2   0.0     0.034        14      15      33 ..     224     242 ..     215     248 .. 0.85
   3 ?   -0.9   0.4       5.2   2.1e+03      48     103 ..     457     512 ..     434     523 .. 0.61
   4 ?   -0.9   0.0       5.4   2.2e+03      38      80 ..     513     565 ..     505     612 .. 0.61
   5 !   10.8   0.0    0.0013      0.51      16      61 ..     636     680 ..     632     737 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 9.9
                 B-HHHCCHCEEEE-SS--S-TTSBHHHH...........H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx...........x RF
    ABC_tran  52 qeleslrkeigvlpqepqlfpeltvren...........e 80 
                 ++   +++ i +l q++ +++ l ++ n           +
  KKY22770.1 122 DSYVAVDHLITCLAQDKDVQKAL-AEANipntklidsaiQ 160
                 44445555566666666666665.4444444444433331 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.034
                 EEEESTTSSHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllag 33 
                 +++Ge G GK+t+++ la+
  KKY22770.1 224 VLIGEPGVGKTTVVEGLAQ 242
                 79***********998876 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 5.2
                 EGGGB-HHHCCHCEEEE-SS--S-TTSBHHHHHHHTCHHHHHHHSTTGGTTCBGES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  48 dlkeqeleslrkeigvlpqepqlfpeltvrenesdeeiekalsklglkelkdtvvk 103
                 + ++++le++++e + +++e +  +e+   e+++++ei++a  kl++ ++k + ++
  KKY22770.1 457 SASKIRLEEAKAEAANVEEELRPMREHYESEKQRSKEIQEAKIKLDQLKVKREEAE 512
                 33335666666666666666555555544444777777777777777666666554 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 5.4
                 SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH............H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............x RF
    ABC_tran  38 teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren............e 80 
                  +G++ +   dl++  ++ ++k+i +l+qe +l  + +++++             
  KKY22770.1 513 RSGDL-MTASDLTYYAIPDTEKRIHFLEQE-KLRADFENAQRsgssgeplvtdaV 565
                 56665.667888889999999******999.555555544444555666655551 PP

  == domain 5  score: 10.8 bits;  conditional E-value: 0.0013
                 EEESTTSSHHHHHHHHTTSS--.SEEEEEETTCEGGGB-HHHCCHCE CS
                 xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  16 ivGenGaGKStLlkllagllkp.teGeilldgkdlkeqeleslrkei 61 
                 + G++G+GK+ L k+la+ l +  +  i++d+ + +e  ++sl++ i
  KKY22770.1 636 FCGPSGTGKTLLTKALAEFLFDdSKAMIRFDMSEYQE--RHSLSRMI 680
                 68***************97655266667777666666..66555555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0     0.001      0.42      78     122 ..     199     243 ..     165     255 .. 0.69
   2 ?    6.5   0.0     0.017         7     100     120 ..     632     652 ..     584     668 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.001
                  EEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  78 evllvsaktkegleelkellkdktsvlvGqSGvGKStLinallpe 122
                  ++++ ++++ + + ++ ++ +++  vl+G+ GvGK+t+++ l+++
   KKY22770.1 199 DPVIGREEEIRRVIRILSRRTKNNPVLIGEPGVGKTTVVEGLAQR 243
                  4444444545555556666667788**************999876 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.017
                  SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinall 120
                     +++G+SG GK+ L +al+
   KKY22770.1 632 PSFLFCGPSGTGKTLLTKALA 652
                  5678**********9999987 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1    0.0007      0.29       9      38 ..     219     248 ..     212     287 .. 0.84
   2 ?    4.4   0.0       0.1        42      12      35 ..     633     656 ..     621     667 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0007
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelg 38 
                 ++++ ++++ pG GKT+v+++  + +v++ 
  KKY22770.1 219 TKNNPVLIGEPGVGKTTVVEGLAQRIVNAD 248
                 45667899************9999888765 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.1
      AAA_19  12 vllvtaGpGtGKTrvlkhivallv 35 
                  +l  ++ GtGKT ++k+  + l 
  KKY22770.1 633 SFLFCGPSGTGKTLLTKALAEFLF 656
                 34555667******9999887765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0024      0.97      22      58 ..     220     255 ..     212     257 .. 0.82
   2 ?    6.6   0.0     0.016       6.6      24      46 ..     633     655 ..     623     665 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0024
      AAA_29  22 kgatlltGpsGsGKSTllDAiqalLvpakkvrfNkaa 58 
                 k++ +l+G+ G+GK+T++  ++  +v a  v  N aa
  KKY22770.1 220 KNNPVLIGEPGVGKTTVVEGLAQRIVNAD-VPANLAA 255
                 45789*************99998888887.7878776 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.016
      AAA_29  24 atlltGpsGsGKSTllDAiqalL 46 
                 ++l+ GpsG+GK+ l  A++  L
  KKY22770.1 633 SFLFCGPSGTGKTLLTKALAEFL 655
                 589*********99888877666 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.29   1.2e+02       9      50 ..     205     246 ..     197     252 .. 0.81
   2 ?   -0.7   0.0         3   1.2e+03     129     144 ..     289     304 ..     270     322 .. 0.76
   3 ?   -0.3   0.1       2.3   9.4e+02      96     121 ..     506     550 ..     469     565 .. 0.63
   4 !    9.3   0.0    0.0026       1.1       7      50 ..     606     657 ..     601     665 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.29
                 HHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S CS
      ResIII   9 eeaienlleklkskrdkrglikmaTGtGKTlvaaklierllk 50 
                 ee i++++  l+ + +++ ++  + G+GKT v   l++r+ +
  KKY22770.1 205 EEEIRRVIRILSRRTKNNPVLIGEPGVGKTTVVEGLAQRIVN 246
                 56678888777766777888999*********9888888765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 3
                 HTTT-SEEEEETGGGT CS
      ResIII 129 lrdrfdviiiDEaHrl 144
                 ++++  v+++DE H l
  KKY22770.1 289 DSKEMVVLFVDEIHLL 304
                 3444559999*99966 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 2.3
                 -..........................-SEEEEEHHHHHHTH... CS
      ResIII  96 a...................kekdstnkkilvttiqsldadseee 121
                                     +++ +t+k+i++ + ++l ad e++
  KKY22770.1 506 VkreeaersgdlmtasdltyYAIPDTEKRIHFLEQEKLRADFENA 550
                 1223333455555557777788999999*********99999443 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.0026
                 HHHHHHHHHT..............TTSEEEEEESTTSTHHHHHHHHHHHH-S CS
      ResIII   7 yQeeaienlleklks........krdkrglikmaTGtGKTlvaaklierllk 50 
                  Q ea+e++ +++          ++   +l+  + GtGKTl+  +l+e l+ 
  KKY22770.1 606 GQREAVESVSNAIRLqrsglsnpNQPPSFLFCGPSGTGKTLLTKALAEFLFD 657
                 799999999988877888999888899***************9988887776 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       3.9   1.6e+03      59     115 ..     226     282 ..     218     291 .. 0.74
   2 !   14.8   0.0   5.8e-05     0.023      15      80 ..     592     658 ..     585     666 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 3.9
                 EE-TTSSHHHHHHHHHHHHSTTGGGSTTEEEEEHHHHS--GGGHHHHHHHHHHHHHH CS
      Torsin  59 hGwtGtGknfvaeiiaenlyrdGlrsdyvkkfvatadfPkkkkveeykeelkeqire 115
                  G +G Gk  v e +a+ + +  + ++     +   d       ++y+ e++e+++ 
  KKY22770.1 226 IGEPGVGKTTVVEGLAQRIVNADVPANLAACKLLSLDVGSLVAGSKYRGEFEERMKG 282
                 5999*********99999988877777766666666666666666666666666665 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 5.8e-05
                 -HHHHHHHHHHH--S-HHHHHHHHHHHHHHHT-S.S-SS-EEEEEEE-TTSSHHHHHHHHHHHHSTT CS
      Torsin  15 nleeLekdlekklfGqhlvkklvvksvkaylene.kpkkpLvlsfhGwtGtGknfvaeiiaenlyrd 80 
                 +l ++e+ l k ++Gq  + ++v ++++   +   +p++p  + f G +GtGk  +++ +ae l+ d
  KKY22770.1 592 KLLHMERHLGKLVVGQREAVESVSNAIRLQRSGLsNPNQPPSFLFCGPSGTGKTLLTKALAEFLFDD 658
                 56678999*******************97765434999************************99976 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0048       1.9       3      26 ..     224     247 ..     223     260 .. 0.84
   2 ?    6.0   0.0     0.033        13       3      37 ..     635     668 ..     634     678 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0048
                 EEESSTTSSHHHHHHCHCT-CCC- CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfse 26 
                 vl+G+ gvGKt+ ++ + ++ ++ 
  KKY22770.1 224 VLIGEPGVGKTTVVEGLAQRIVNA 247
                 79***********99988876665 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.033
                 EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEE CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekstigvdfl 37 
                 +++G sg+GKt l k + e  f+++ k++i  d++
  KKY22770.1 635 LFCGPSGTGKTLLTKALAEFLFDDS-KAMIRFDMS 668
                 689**************99988765.566666655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0    0.0009      0.37       4      30 ..     224     250 ..     223     266 .. 0.86
   2 ?    3.4   0.0      0.16        65       6      24 ..     637     655 ..     633     718 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0009
                 EEEC-TTTCHHHHHHHHHHHHCTS-SC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklp 30 
                 +l Ge+G+GKTt +++la+ +   + p
  KKY22770.1 224 VLIGEPGVGKTTVVEGLAQRIVNADVP 250
                 689***************998776665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.16
                 EC-TTTCHHHHHHHHHHHH CS
       NACHT   6 qGeaGsGKTtLlqklalaw 24 
                  G++G GKT L + la+ +
  KKY22770.1 637 CGPSGTGKTLLTKALAEFL 655
                 69**********9999765 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.081        33      14      40 ..     218     244 ..     205     254 .. 0.76
   2 !    9.5   0.0    0.0014      0.56      12      58 ..     627     674 ..     617     698 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.081
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdel 40 
                 +++   +l G pG GK+++ e l++++
  KKY22770.1 218 RTKNNPVLIGEPGVGKTTVVEGLAQRI 244
                 555555677***********9999876 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0014
  Zeta_toxin  12 sqerPklillgGqpGAGKselaellkdele.rqgnvvrldpDdlRelh 58 
                 + ++P + l  G +G GK+ l ++l++ l    + ++r+d  +++e+h
  KKY22770.1 627 NPNQPPSFLFCGPSGTGKTLLTKALAEFLFdDSKAMIRFDMSEYQERH 674
                 45899999*******************99989999***********99 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0045       1.8       5      37 ..     224     256 ..     220     259 .. 0.87
   2 ?    4.9   0.0     0.043        17       4      29 ..     634     659 ..     631     666 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0045
                 EEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEE CS
       SRP54   5 llvGlqGaGKTttlaKLaallkkegkkvllvaa 37 
                 +l+G  G+GKTt +  La+++ +    + l+a+
  KKY22770.1 224 VLIGEPGVGKTTVVEGLAQRIVNADVPANLAAC 256
                 799*****************9999888888876 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.043
                 EEEEESTTSSHHHHHHHHHHHHHHTT CS
       SRP54   4 illvGlqGaGKTttlaKLaallkkeg 29 
                 +l++G+ G+GKT  +  La+ l ++ 
  KKY22770.1 634 FLFCGPSGTGKTLLTKALAEFLFDDS 659
                 79************999999887665 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00049       0.2       4      29 ..     225     250 ..     222     257 .. 0.88
   2 ?    1.2   0.0      0.74     3e+02       3      24 ..     635     656 ..     633     675 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00049
                 EE--TTSSHHHHHHHHHHHH...GGG CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellkssgvk 29 
                 + G+pGvGKtT+v+ +++ + + +v+
  KKY22770.1 225 LIGEPGVGKTTVVEGLAQRIVNADVP 250
                 67****************99988876 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.74
                 EEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlellk 24 
                 +  Gp+G+GKt l k ++e l 
  KKY22770.1 635 LFCGPSGTGKTLLTKALAEFLF 656
                 567********99999998875 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0042       1.7      37     116 ..     224     303 ..     204     322 .. 0.77
   2 ?    3.8   0.1      0.09        37      37      54 ..     635     652 ..     633     662 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0042
      AAA_25  37 llaGapgtGKttlaldlalava.tGkpwlg.pvapeqgkVlyvsaEds.edelrrRlravgealrddarllvldlagveslpL 116
                 +l+G pg+GKtt++  la  ++  + p     ++     V  ++a  + + e+++R++ v+++++d ++  vl +   ++++L
  KKY22770.1 224 VLIGEPGVGKTTVVEGLAQRIVnADVPANLaACKLLSLDVGSLVAGSKyRGEFEERMKGVLKEIEDSKEMVVLFV---DEIHL 303
                 699***************999977777766744445555544444444377899999999999888777777775...34555 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.09
      AAA_25  37 llaGapgtGKttlaldla 54 
                 l++G++gtGKt l+  la
  KKY22770.1 635 LFCGPSGTGKTLLTKALA 652
                 689**********98877 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.042        17      39      70 ..     214     245 ..     206     295 .. 0.81
   2 ?    6.7   0.0     0.015       6.2      47      69 ..     633     655 ..     603     674 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.042
       Rad17  39 vLesrkkriLLisGPsGCgkstvvkvLskelg 70 
                 +L +r k+  ++ G +G gk+tvv+ L++  +
  KKY22770.1 214 ILSRRTKNNPVLIGEPGVGKTTVVEGLAQRIV 245
                 5777777777788**************98765 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.015
       Rad17  47 iLLisGPsGCgkstvvkvLskel 69 
                   L +GPsG gk+   k L+  l
  KKY22770.1 633 SFLFCGPSGTGKTLLTKALAEFL 655
                 5799**********999998755 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.022       8.9       2      20 ..     226     244 ..     225     254 .. 0.85
   2 ?    4.0   0.0     0.092        38       2      23 ..     637     658 ..     636     667 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.022
  ATP_bind_1   2 vGpaGsGKttfvgalseil 20 
                 +G +G+GKtt v+ l++ +
  KKY22770.1 226 IGEPGVGKTTVVEGLAQRI 244
                 8************999876 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.092
  ATP_bind_1   2 vGpaGsGKttfvgalseilelr 23 
                 +Gp G GKt +++al+e+l + 
  KKY22770.1 637 CGPSGTGKTLLTKALAEFLFDD 658
                 8****************98765 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       8.5   3.5e+03      54      73 ..      93     123 ..      47     169 .. 0.67
   2 ?    4.6   0.0     0.077        31       9      22 ..     230     243 ..     224     447 .. 0.93
   3 ?    4.1   0.0      0.11        44       7      34 ..     639     666 ..     635     679 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 8.5
                 H...........CCHCCCHHHHHHCHCHHHH CS
                 x...........xxxxxxxxxxxxxxxxxxx RF
        CbiA  54 p...........dlkrllellealgkkkall 73 
                 +           + +++l+++++l+k++++ 
  KKY22770.1  93 QdpppenvsvspSFSKILRSAHDLSKTQKDS 123
                 1555566666667777777888887776654 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.077
                 TSSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxx RF
        CbiA   9 GvGKTtlaanLara 22 
                 GvGKTt++ +La+ 
  KKY22770.1 230 GVGKTTVVEGLAQR 243
                 9*********9985 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.11
                 STTSSHHHHHHHHHHHHHHTT--EEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   7 kGGvGKTtlaanLaralarrglrVllvD 34 
                  +G+GKT l+ +La  l ++ +  + +D
  KKY22770.1 639 PSGTGKTLLTKALAEFLFDDSKAMIRFD 666
                 59************99988766666555 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.25     1e+02       5      23 ..     224     242 ..     220     248 .. 0.84
   2 ?    6.4   0.0     0.017       6.8       5      23 ..     635     653 ..     633     697 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.25
   PduV-EutP   5 lliGkvgsGKttLtqalkg 23 
                 +liG+ g+GKtt+ + l +
  KKY22770.1 224 VLIGEPGVGKTTVVEGLAQ 242
                 79**********9888766 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.017
   PduV-EutP   5 lliGkvgsGKttLtqalkg 23 
                 l+ G++g+GKt Lt+al +
  KKY22770.1 635 LFCGPSGTGKTLLTKALAE 653
                 799**************87 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.8         3   1.2e+03     131     176 ..      83     173 ..      45     192 .. 0.49
   2 ?    2.4   0.0      0.48     2e+02      23      39 ..     224     240 ..     219     242 .. 0.88
   3 ?   -0.8   0.0       4.5   1.8e+03     154     188 ..     337     372 ..     274     380 .. 0.69
   4 ?   11.3   0.0   0.00088      0.36      19      50 ..     631     662 ..     618     687 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 3
      AAA_23 131 ilnlilflgqer...........feefel......kdkke...rleelekeleeledekkllekl.........................e 176
                 i+++++ l++++           f ++++      k++k+   +++ l+++l + +d++k l +                           
  KKY22770.1  83 INKQLVRLPSQDpppenvsvspsFSKILRsahdlsKTQKDsyvAVDHLITCLAQDKDVQKALAEAnipntklidsaiqqirgtkrvdsktA 173
                 5555555555555655556655533333334333333333667444444444444444444443334333333333444444422232221 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.48
      AAA_23  23 lItGpNGaGKTTildAi 39 
                 +++G+ G GKTT+++ +
  KKY22770.1 224 VLIGEPGVGKTTVVEGL 240
                 67899*********987 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 4.5
      AAA_23 154 rleelekeleeledekkllekle.qekekekeleel 188
                  l+e++k +e+  ++++ +++++ +e + +++++ l
  KKY22770.1 337 TLAEYRKYIEKDAAFERRFQQVLvKEPSIQETISIL 372
                 7999********999999999843666666655544 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 0.00088
      AAA_23  19 kgltlItGpNGaGKTTildAiklaLygetprl 50 
                 ++ +l++Gp G+GKT +  A+   L+ +++ +
  KKY22770.1 631 PPSFLFCGPSGTGKTLLTKALAEFLFDDSKAM 662
                 789******************99999887655 PP

>> GIT_CC  GIT coiled-coil Rho guanine nucleotide exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.8       6.2   2.5e+03      21      64 ..     140     183 ..     138     184 .. 0.87
   2 ?    0.5   0.0       1.3   5.5e+02      13      49 ..     336     372 ..     332     374 .. 0.82
   3 ?    6.5   0.1     0.019       7.6      40      62 ..     435     457 ..     431     460 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 6.2
      GIT_CC  21 lKkalaaseakiqqLlkvNtslsdelrlLQskvqkLqaeNaqlr 64 
                 + kala ++   ++L+ +  ++ +  ++  sk    ++eN++l+
  KKY22770.1 140 VQKALAEANIPNTKLIDSAIQQIRGTKRVDSKTADAEQENENLK 183
                 77899999999999999999999999999999999999999997 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.3
      GIT_CC  13 VtleeylelKkalaaseakiqqLlkvNtslsdelrlL 49 
                  tl ey    ++ aa e++ qq+l    s+++ ++ L
  KKY22770.1 336 TTLAEYRKYIEKDAAFERRFQQVLVKEPSIQETISIL 372
                 5667777777888999********9999999999876 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.019
      GIT_CC  40 tslsdelrlLQskvqkLqaeNaq 62 
                  ++++ lr+LQ +++ L  e ++
  KKY22770.1 435 DNMERRLRQLQIEIHALDREKDS 457
                 599**************999775 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.2       4.5   1.8e+03     135     183 ..     177     221 ..     105     225 .. 0.40
   2 ?   10.0   1.5   0.00034      0.14      31     116 ..     433     508 ..     332     570 .. 0.56

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.5
  V_ATPase_I 135 keeeeeeeseeeeeeelleeeee............lsfvaGvikr.ekveaferilwralrg 183
                 +e+e+                               + +  vi r e++++  ril r ++ 
  KKY22770.1 177 QENEN-----------------LkkftidmtamarEGKIDPVIGReEEIRRVIRILSRRTKN 221
                 11111.................0111111111111233444443314455555666555555 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00034
  V_ATPase_I  31 rcdemerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefl 116
                  +d+mer+lr l+ ei+ l+ ++ ++++           +l+e ++e  ++eeel+ ++e++e+ k++ +e++e+k  l + k   
  KKY22770.1 433 ALDNMERRLRQLQIEIHALDREKDSASK----------IRLEEAKAEAANVEEELRPMREHYESEKQRSKEIQEAKIKLDQLKVKR 508
                 3566666666666666664444433333..........223333333333333333333333333333333333332222222222 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.3       5.1   2.1e+03      47      73 ..     170     182 ..     134     194 .. 0.51
   2 ?   10.2  10.8   0.00088      0.36      58     127 ..     436     503 ..     422     513 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5.1
         GAS  47 kelseisqenkrlkepLkkaeeeveeL 73 
                  + ++++qen              e+L
  KKY22770.1 170 SKTADAEQEN--------------ENL 182
                 2222222222..............222 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00088
         GAS  58 rlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelyk 127
                 +++  L++++ e+  L ++    +k   +l+++ka+  ++e+el+ +++++e+ +qr +++++++ +l +
  KKY22770.1 436 NMERRLRQLQIEIHALDREKDSASK--IRLEEAKAEAANVEEELRPMREHYESEKQRSKEIQEAKIKLDQ 503
                 788899999*****99998777665..899*********************************8876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (928 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1411  (0.0786993); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                        46  (0.00256568); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              44  [number of targets reported over threshold]
# CPU time: 1.00u 0.33s 00:00:01.33 Elapsed: 00:00:00.52
# Mc/sec: 5401.94
//
Query:       KKY22771.1  [L=2370]
Description: putative lovastatin nonaketide synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-69  234.1   0.0    3.4e-69  233.2   0.0    1.5  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    1.7e-61  208.1   0.0    2.7e-61  207.4   0.0    1.3  1  PS-DH            Polyketide synthase dehydratase
    2.5e-50  171.8   0.0      4e-50  171.1   0.0    1.3  1  Acyl_transf_1    Acyl transferase domain
    3.9e-37  127.9   0.1    1.5e-36  126.0   0.1    2.1  2  KR               KR domain
    7.9e-35  119.4   0.1    7.9e-35  119.4   0.1    2.9  3  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    1.6e-14   54.3   0.0      8e-14   52.0   0.0    2.3  1  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    8.4e-05   22.0   0.2    0.00017   21.0   0.2    1.4  1  Thiolase_N       Thiolase, N-terminal domain
    8.9e-05   22.2   0.1    0.00034   20.2   0.1    2.0  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    0.00013   21.5   0.0    0.00033   20.2   0.0    1.6  1  adh_short        short chain dehydrogenase
    0.00044   20.6   0.0     0.0017   18.7   0.0    2.0  2  PP-binding       Phosphopantetheine attachment site
     0.0014   18.4   0.5     0.0038   17.0   0.5    1.7  1  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
     0.0025   16.9   0.3     0.0081   15.2   0.0    1.8  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.2   0.0   2.3e-72   3.4e-69       2     253 .]       3     255 ..       2     255 .. 0.93

  Alignments for each domain:
  == domain 1  score: 233.2 bits;  conditional E-value: 2.3e-72
                    --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..S....TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadrwdadklydpparaagkiktklggfld....vddfdpeffgispreaeamdpqqrll 92 
                    ep+aivGmg+r+Pg  + ++++w+ L+++r+a +++p++rwd++++y+p+++  g i +  g+fl      ++f+p+ffgi+p ea+ mdpqqr l
     KKY22771.1   3 EPIAIVGMGCRLPGDCSsPSKLWDFLIAKRSAQTDVPKNRWDPTNWYHPDPNRRGAIASTGGYFLSqddsFQNFEPTFFGINPLEAATMDPQQRKL 98 
                    89***********98777*****************************************99***98733446899********************* PP

                    HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHH CS
  ketoacyl-synt  93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqs 188
                    +e+++e++e+agl  +++ gs +g+f+G+   dy+++ + d +g   + +    g+ ++ +i++r++y ++lrGps+t+dtACsSsl a+h+a+q+
     KKY22771.1  99 MEVVYETFESAGLGLQQIAGSLTGCFVGAFTTDYKEILSRDIEG--YSSYQ-SSGS-DTTIISNRVNYVFDLRGPSMTIDTACSSSLYALHVACQN 190
                    **********************************9866666554..23333.5566.9************************************** PP

                    HHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 189 lrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    ++ g++  a++ G++ ++  ++     ++g+ls++  c++fd++adGf ++EG+ a+ +krl+da
     KKY22771.1 191 IQLGDCRGAIVAGTSIMMDIKQQLTATKIGILSTTSTCHTFDEQADGFGRAEGITAIYIKRLSDA 255
                    ******************************99999****************************98 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.4   0.0   1.8e-64   2.7e-61       1     283 [.     941    1228 ..     941    1235 .. 0.90

  Alignments for each domain:
  == domain 1  score: 207.4 bits;  conditional E-value: 1.8e-64
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.....-EEEEEEEE----.B--SS-EEEEEEEEE-T CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltges....kavelrdvsilkalvlpedepvevqlslepee 93  
                  h+llGsr + +sd+ +++rn l+l+++pwL DH+++++v++P+agy++ma+eA+rq+++++    +++++rd si++a++l+ d  +e++l+l   +
  KKY22771.1  941 HDLLGSREPISSDTAPIWRNILKLSDVPWLVDHKIGDSVLFPAAGYVAMAVEALRQVASDHgfipESFSIRDMSIMSAIILNADAKTEIVLNLVHLD 1037
                  9*********************************************************999**********************************95 PP

                  TS-E........EEEEEEE-SS-TT.EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEE..TTE CS
       PS-DH   94 dgad....rawvefeifSregggeewtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrg..dge 184 
                   +a+     ++++fei+S ++ ++ w +ha G +r++ ++++++++++ l        ++++ +s ++Y r+a+ gl+yGp+F+ lr++ +   +g 
  KKY22771.1 1038 -QAQsgpnVKQYRFEISSLGTTKT-WSKHAFGIIRYDVQSRHEELEMQML--------QIQRPDSLDWYSRFAKFGLKYGPAFRTLRTICSHprPGH 1124
                  .5555999999************9.***********99988555555555........344457778************************966778 PP

                  EEEEE---..GGGSSTTTT-SB-HHHHHHHHHHG..GG.----------EEEEEEEEEEE-S.....-BTS--EEEEEE----SS-EEEEEEEE-SS CS
       PS-DH  185 alaelrlp..eelaggesayvlhPallDaalQllaaal.saeaekadaaylPvaierlrvyr..pssaageelwvharleeegarsivadltlvded 276 
                  ala+++l   + ++++es+y++hP+ lD +lQl ++a  +  a +++aaylP+ i+++++++   +++ g +++v+ r+e++g r++v+dl++v++ 
  KKY22771.1 1125 ALAKVSLNatAGTMQRESPYMIHPTALDGCLQLGLVAGtNGGAASDGAAYLPFEIQSMKIWNhgFQASLGPTATVYNRCEASGLRKLVSDLEIVTNR 1221
                  8888888876666677777*************887777877899********************66679**************************99 PP

                  -BEEEEE CS
       PS-DH  277 Grvvaei 283 
                   +++a+ 
  KKY22771.1 1222 NQPLAKA 1228
                  9999875 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.1   0.0   2.7e-53     4e-50       3     316 ..     555     884 ..     553     886 .. 0.87

  Alignments for each domain:
  == domain 1  score: 171.1 bits;  conditional E-value: 2.7e-53
                    EE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHH...T--HHHHHHS--TTGGGSHHHHHHHHH...HHHHHHHHHHHHTT-TTSEEEE-TT CS
  Acyl_transf_1   3 vfsGqGsQwaGMGmeLlktskafaaviaradeafksqy...gfsvldvlrnnpeglldaiqfvqpaLa...avqialaellkskGvrpaavvGHSl 92 
                    vf+GqG+Qw  MG +Ll   ++f ++++r+d+a++ +    ++++l++l +    ++++i  + ++++   a+qial++ll s G +  avvGHS 
     KKY22771.1 555 VFTGQGAQWPQMGYSLLTRFPVFFQSLQRLDRAMATVVdppDWTILEALSSPA--NVSRISEIAVSVTlcsALQIALVDLLWSWGIHAKAVVGHSS 648
                    9********************************997753337********998..888888887777644479*********************** PP

                    HHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS..HHHHHHH...TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECC CS
  Acyl_transf_1  93 GElAaavvagalsseeallavvlrsrlmmqlagpgdmaavel.aeeeeklr.cqddvvgavansprrvvisgsqealrelvervskegvgalvenv 186
                    GE Aaa++ag l++ ea+   + r+  +++ a pg+m av+l a e +k +   +d+++a++nsp + ++sgs ea++e+   ++++ ++a+v++ 
     KKY22771.1 649 GEAAAAYAAGLLTASEAIITSYYRGLSIKKHARPGAMMAVGLgASEALKYAdGREDIYVACHNSPASATLSGSVEAIEEIGSLLREKAIFARVIKT 744
                    *********************99999999999**********98888999999***********************************99999875 PP

                    .CEECTTCCCCCCCCHHHHHHHHC.......CCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTS..SSECC-CCEECSSSSCCH CS
  Acyl_transf_1 187 .nvavhspqvdaiadalasaladi.......aprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsa..aetiplvfveispHslll 272
                     + a hsp+v+++a   +s+ ad         +rk +v+ +s ++  + + +++   yw +n+ +pv+f+eav+s+   e+  +  +e+ pHs l+
     KKY22771.1 745 gGNANHSPFVADAARYFRSEFADAlpskdimSHRKGTVPMYSCITGGKVDSHQVGIYYWGDNIEKPVLFDEAVQSLlkTESHIDLLLEVGPHSALA 840
                    16788**********9999988741111112467889***************************************7778888899********98 PP

                    CCCCCCCHHGGG-TCCCC..CCTEETTSS-HHHCHHHHHHHHHHCT CS
  Acyl_transf_1 273 aalektlksaedvksatl..vGklkrdltdflvtflyllakahltg 316
                      l++    a + ++++l  +++l r++++ ++++l+l++ + ltg
     KKY22771.1 841 GPLRQIRA-AVGRSPEELpyLPSLARGQDN-VSDMLQLAGSLYLTG 884
                    87777555.444444443338999999988.888888888887776 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.2   6.3e+03      73      92 ..     253     272 ..     249     276 .. 0.76
   2 !  126.0   0.1     1e-39   1.5e-36      39     178 ..    2015    2155 ..    2000    2157 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.2
                 HHHHHHSS---EEEE----- CS
          KR  73 eeikaeeppikGvihaAgvl 92 
                 +++ a+++pi+G+i+a  + 
  KKY22771.1 253 SDALADGDPIRGIIRATAIN 272
                 45567889******998775 PP

  == domain 2  score: 126.0 bits;  conditional E-value: 1e-39
                  HHHHHHHHHHHHT..T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--HHHHHHHHTTTTHHHHHHHHHTTT..S--SEE CS
          KR   39 edskaliaeleal..gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemtaedleqvlapKvkGawnLhelled..esldff 131 
                  ++++++i+el ++  +++vevv+  v+++++v +++ +++    pi+Gvi+aA v+ d+l+e+m+ +++++v++pKv+G+ nLhe+++d   +ldff
  KKY22771.1 2015 PAAASFIKELLESsqEISVEVVRGNVTNRADVDQAVGKAN---FPIRGVIQAAAVFGDSLIESMDIASFNKVMQPKVQGTINLHEATKDlsPPLDFF 2108
                  56677888886543389********************998...7*********************************************9889**** PP

                  EEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--B CS
          KR  132 vlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglw 178 
                  v++SS  g++g ++q++YaaaN+flD +a+ r s+gl+a s+ +g++
  KKY22771.1 2109 VMTSSTVGVVGPTTQSHYAAANTFLDFMARRRWSLGLQACSLSLGMV 2155
                  ********************************************987 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   0.1   5.3e-38   7.9e-35       2     116 ..     264     379 ..     263     381 .. 0.97
   2 ?    0.8   0.0      0.32   4.8e+02      75      90 ..     489     504 ..     473     511 .. 0.77
   3 ?   -3.3   0.9       5.9   8.8e+03      84     103 ..     641     660 ..     640     665 .. 0.78

  Alignments for each domain:
  == domain 1  score: 119.4 bits;  conditional E-value: 5.3e-38
                      EEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   2 avikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHleaAa 94 
                      ++i+++a+n +g+ +++ +p+ ++q+++i+ka+++a++d ++   ve+hgtgtp+gDpiE++a+ +vf+e ++ +qpl+++S KsniGH+e+A+
       KKY22771.1 264 GIIRATAINTNGKGAGISHPSISGQEAVIRKAYSKANLDLTTTAFVECHGTGTPIGDPIEVQAVGNVFAEARSwQQPLFLTSLKSNIGHTEGAS 357
                      6799*******************************************************************99********************* PP

                      HHHHHHHHHHHHHHTEE--BTT CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptln 116
                      G+a++ikvv++l++g+ip+t +
       KKY22771.1 358 GIASVIKVVKSLETGIIPATYG 379
                      ******************9976 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.32
                      SCTSEEE-THHHH-B- CS
  Ketoacyl-synt_C  75 kqplavgSvKsniGHl 90 
                      + +  + +vK+n+GH+
       KKY22771.1 489 SLRANIAAVKANVGHA 504
                      556889*********8 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 5.9
                      HHHH-B-GGGHHHHHHHHHH CS
  Ketoacyl-synt_C  84 KsniGHleaAaGvaelikvv 103
                      K+ +GH+ + a++a ++ ++
       KKY22771.1 641 KAVVGHSSGEAAAAYAAGLL 660
                      999****9999888777665 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   5.4e-17     8e-14       2     112 .]     384     526 ..     384     526 .. 0.83

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 5.4e-17
  KAsynt_C_assoc   2 npeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk...............................eeslp 61 
                     np i+ +++g lkV + + pwp+++    ++ NsfG+GG+n+HviL+s ++  ++   +                                +  +
      KKY22771.1 384 NPAIN-FHDGALKVAEIAEPWPEHLnykrASLNSFGYGGANAHVILDSVQSYLNAAGINplrtwtwlkglhsssvadccsqavevdgcskLSAVK 477
                     89***.******************999***********************44444444444567777777888888889999999999988999* PP

  KAsynt_C_assoc  62 rLlvlsgrteeaveallekleehlldaellsllneilseeisrlpyRGyav 112
                     +Llv s++++ +++a++++++++  +a l +l++++    +s+l  R+++v
      KKY22771.1 478 YLLVHSANSQRSLRANIAAVKANVGHARLQDLAHTLT--TRSSLHERAFTV 526
                     *********************9987777766666655..345577788776 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.2   1.1e-07   0.00017      62     123 ..     156     215 ..     143     250 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.1e-07
                 HHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS-EEET CS
  Thiolase_N  62 iarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsnaptaes 123
                 i++ +    ++    p++t++ +csS+l a++ a+q+i+ g++  +++ G+  m + +++ +
  KKY22771.1 156 ISNRVNYVFDL--RGPSMTIDTACSSSLYALHVACQNIQLGDCRGAIVAGTSIMMDIKQQLT 215
                 55555555555..6799**********************************99988877765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.5   2.3e+03      71     124 ..    1728    1780 ..    1721    1783 .. 0.63
   2 !   20.2   0.1   2.3e-07   0.00034      34     153 ..    2024    2138 ..    2011    2140 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.5
                    EEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSCCEEE CS
  adh_short_C2   71 Dilvnnagiapklkgpfletsreefdraldvnlyslfllakaalplmkeggsiv 124 
                     ++v+  ++a + k  ++++  ++fd+ ++  + ++++ ++  +  +++g  ++
    KKY22771.1 1728 QVIVHPKAYALS-KLAVTTLRGQNFDEHFSCEFLGVISHVQSNKSQFRSGDHVI 1780
                    466666677766.66666667777777777777777777777666666666665 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 2.3e-07
                    HHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEE CS
  adh_short_C2   34 veelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslfllakaalplmkeggsivnlss 128 
                    + e  +e++ ev++ +Vt++++v+++v ++      + +++ +a++  +  + +++++ ++f+++++ +++++++l +a + l  +    v +ss
    KKY22771.1 2024 LLESSQEISVEVVRGNVTNRADVDQAVGKANF---PIRGVIQAAAVFGD--SLIESMDIASFNKVMQPKVQGTINLHEATKDLSPPLDFFVMTSS 2113
                    345556777889**************998764...799***********..99999*************************************** PP

                    GGGTSBSTTTTHHHHHHHHHHHHHH CS
  adh_short_C2  129 vgaervvpnynaygaaKaalealtr 153 
                    + + ++ + +++y+aa   l  ++r
    KKY22771.1 2114 TVGVVGPTTQSHYAAANTFLDFMAR 2138
                    *9988888888****9877766665 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.2e-07   0.00033      37     159 ..    2017    2136 ..    2001    2141 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.2e-07
                  HHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEE CS
   adh_short   37 leevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseeewervievNltgvflltravlpamlkqssGrI 131 
                  ++  +kel e   + ++ +++++vt+r++v+++v ka     ++  +++ A++ g++ +++++ + +++v++  ++g+++l +a  +   +      
  KKY22771.1 2017 AASFIKELLESsqEISVEVVRGNVTNRADVDQAVGKA---NFPIRGVIQAAAVFGDSLIESMDIASFNKVMQPKVQGTINLHEATKDL--SPPLDFF 2108
                  556677777764566799*****************99...568999**********************************98885555..688889* PP

                  EEEEEGGGTSB-TTBHHHHHHHHHHHHH CS
   adh_short  132 vnvsSvagkvpvagvaaYsAsKaavagl 159 
                  v +sS++g v+   ++ Y+A+  +++ +
  KKY22771.1 2109 VMTSSTVGVVGPTTQSHYAAANTFLDFM 2136
                  ********************97777655 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       5.6   8.3e+03      20      46 ..    1620    1646 ..    1608    1648 .. 0.83
   2 !   18.7   0.0   1.1e-06    0.0017      19      66 ..    2310    2358 ..    2291    2359 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.6
  PP-binding   20 pdtdlfdlGlDSllavellaaleeefg 46  
                  ++ dl + G D  +++el+ +++++f+
  KKY22771.1 1620 ATVDLESTGADLHTSAELIWKVQAKFQ 1646
                  57899999999999********99996 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.1e-06
  PP-binding   19 dpdtdlfdlGlDSllavellaaleeefgveiplsdlfe.hptlaelaay 66  
                  ++  +l++lG+DS++  +l ++ ++e++ ++p  +++e  + l+ l+++
  KKY22771.1 2310 SLGRPLSELGMDSIMGSALRGWARKELKADVPFMEVLEgGRALNGLIEM 2358
                  68899*****************************999878888887776 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.5   2.5e-06    0.0038       3      45 ..     173     212 ..     171     221 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.5e-06
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGCS-TTT CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetlskilDwkd 45 
                  + +aCs+ +yal+vA + i+ g ++ ++v g+ +   ++D k+
   KKY22771.1 173 IDTACSSSLYALHVACQNIQLGDCRGAIVAGTSI---MMDIKQ 212
                  678****************************999...555555 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       0.8   1.2e+03      50     105 ..     162     213 ..     129     231 .. 0.67
   2 !   15.2   0.0   5.4e-06    0.0081      35     125 ..    2022    2123 ..    2005    2131 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.8
   3Beta_HSD  50 iegDvtdkd.kleealegvdvvihlaslvdvagkltedeimkvnvkGTrnvleacvk 105
                    D++  + +++ a+ ++   +h+a+ +   g      +  ++v GT  +++   +
  KKY22771.1 162 YVFDLRGPSmTIDTACSSSLYALHVACQNIQLG-----DCRGAIVAGTSIMMDIKQQ 213
                 44577765427999***********99887777.....4888889999888776555 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 5.4e-06
   3Beta_HSD   35 pelleelskvnvkkviegDvtdkdkleealegvdv....vihla.....slvdvagkltedeimkvnvkGTrnvleacvkag..vrvlvYtSs.aev 119 
                  +elle+++++ v+ v+ g vt+ +++++a+ +++     vi  a     sl++++   +++++m+  v+GT n+ ea ++ +  + ++v tSs ++v
  KKY22771.1 2022 KELLESSQEISVE-VVRGNVTNRADVDQAVGKANFpirgVIQAAavfgdSLIESMDIASFNKVMQPKVQGTINLHEATKDLSppLDFFVMTSStVGV 2117
                  5677788888887.****************9987533335555512222567888999*********************99755789999975389* PP

   3Beta_HSD  120 vgpnsl 125 
                  vgp ++
  KKY22771.1 2118 VGPTTQ 2123
                  **9554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.22u 0.33s 00:00:01.55 Elapsed: 00:00:00.56
# Mc/sec: 12814.95
//
Query:       KKY22772.1  [L=520]
Description: putative amp-binding enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-76  256.2   0.0    5.6e-76  255.8   0.0    1.0  1  AMP-binding    AMP-binding enzyme
    1.4e-15   58.0   0.6    3.9e-15   56.6   0.5    1.9  2  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.8   0.0   6.2e-80   5.6e-76      17     423 .]      22     420 ..      11     420 .. 0.86

  Alignments for each domain:
  == domain 1  score: 255.8 bits;  conditional E-value: 6.2e-80
                  CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCCCHHHHHHHH CS
  AMP-binding  17 sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvdselleklleaa 114
                  +++  +lT ++l+e+v++l  gL+ lG+k+gd V + + n + + v++l+i  aG+v v  np++ta+el  +l+ ++ak+++  v+ el + l ++a
   KKY22772.1  22 YNSTDSLTAKQLKENVRKLICGLQTLGLKPGDSVCVHSFNHIWYPVLYLGIIGAGGVFVGSNPAYTARELTRVLTVTKAKFIL--VQPELSQTLPDVA 117
                  567899*****************************************************************************..9888888888888 PP

                  SCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS.......-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHH.HHHCSCCTTT-E CS
  AMP-binding 115 akleavklvivldadellkeeelkeeeeseekae.......kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslk.letrfklkeddv 204
                  a+ + +++ i++ + +++++ +++++ ++    +       k  ++ee+ + ++a +++TSGT G PK++ +sh  lva+ + ++ +   +++  + +
   KKY22772.1 118 AACKIPQSRILMIDLDSPDAHDSPTSLHALL--QhgeadwiKF-DNEETAKRTTAALLWTSGTSGVPKAAAMSHYGLVAQ-SVISeWH-GRRVPYKVR 210
                  8888777776666566565555555543332..1345778644.677899************************999999.4443222.233434778 PP

                  EEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EBHHHHHH CS
  AMP-binding 205 vlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggeplspellrf 302
                   l  lpl+h+f l  + + +l  G++ ++++++++ d    +++++++++++i++vP ++ a++ + +++    +++l slr ++++g+pl  e+++ 
   KKY22772.1 211 RLLPLPLFHSFIL-PFNISPLREGHQTYIMKRFNRDD---YVDFVKQFQINTIPVVPPIALAVFGQIRPN----DSSLTSLREIVCAGAPLGGEVQTN 300
                  8***********8.*******************9955...68*********************9986666....569********************* PP

                  HHHHHTC..EEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSE..EEEEEEETTS-SEBTT-HHHHHHHEEETCCEE CS
  AMP-binding 303 fralfge..evlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgee..GellvrgpgvmkgYlkkpeataeafdsegrwl 396
                  + + + e  ++++++G+TEt+  +++ + +e+    gsvG+ +p+++vk +D ++ e  + g    Gel+++gpg+m+ Y ++   t+  f   ++w+
   KKY22772.1 301 LARSLHEdaRFVQLWGMTETGWLAAYTY-PER-GEFGSVGRLVPNTKVKAIDRNGAEVRGSGGNqlGELYIQGPGTMSYYINEGGSTENDFE--DGWF 394
                  ****999999**************8655.333.368*****************9555555443347*************************7..57** PP

                  EEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding 397 rTGDlgrldedGyleivgRkkdliklr 423
                  rTGD+g+   +G+ +iv+R+kdlik+r
   KKY22772.1 395 RTGDIGYQK-QGQWYIVDRAKDLIKVR 420
                  ******998.9**************96 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         2   1.8e+04      42      54 ..      29      41 ..      20      44 .. 0.73
   2 !   56.6   0.5   4.4e-19   3.9e-15       1      76 []     428     506 ..     428     506 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2
                   HHHHHHHHHHHHT CS
  AMP-binding_C 42 leeeLkahvrkel 54
                   ++++Lk+ vrk +
     KKY22772.1 29 TAKQLKENVRKLI 41
                   7899999999855 PP

  == domain 2  score: 56.6 bits;  conditional E-value: 4.4e-19
                    HHHHHHHSSTTEEEEEEE-----TTS..---EEEEEE------.HHHHHHHHHHHHT-TTTS-S.EEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkG..ealvafVvlkdgsea.leeeLkahvrkelgpyavpk.kvvfvdelpktrsGK 76 
                    e+E++l++hp++++aaV+G++++ +G  e + af+v ++++e+ +e+ +k+hv k+l+++++ +  v fvd +p+t sGK
     KKY22772.1 428 EIEACLLEHPGIKDAAVIGIKTK-DGteELPRAFIVKAKDVEPiTEQMVKEHVQKHLAKFKALDgGVQFVDTIPRTVSGK 506
                    8**********************.444799******866766679***************999989*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.50
# Mc/sec: 3114.28
//
Query:       KKY22773.1  [L=996]
Description: putative ca2+ calmodulin-dependent protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-18   66.7   0.0    8.8e-13   48.2   0.0    2.6  2  Pkinase      Protein kinase domain
    1.8e-07   30.8   0.0    6.8e-06   25.6   0.0    3.0  1  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.074   12.9   0.2        0.2   11.5   0.2    1.7  1  DIX          DIX domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.5e-06    0.0088       5     111 ..      72     195 ..      68     200 .. 0.74
   2 !   48.2   0.0   1.5e-16   8.8e-13     117     260 ..     222     411 ..     219     413 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.5e-06
                 EEEEEESSEEE..EEEEETTTTEEE...EEEEEECHCHCHHHH.......HHHHHHHHHHHHHS...CTTB--EEEEEEE.....SSEEEEEEE--TTE CS
     Pkinase   5 eklGeGsfGkV..ykaveketgkiv...AvKkikkekakkkke.......kkvlrEikilkklk...hpnivrlyevfee.....kdelylvleyvegg 83 
                 + lG+G++G    y+ +e  tg+     ++K+  + +++           k+v +E +i+++++    +niv+l+++ +      + ++ ++ley+++g
  KKY22773.1  72 RPLGQGGYGWAalYERREVGTGRVLeqaVLKETGRTNTS---CpnywtknKTVPTEANIMAQTNsknNQNIVQLKSFKRYlnwkgNPKYRFFLEYCPHG 167
                 678888888663355555555544311133433333333...244566679***********99777889*****9988888998889999******** PP

                 BHHHHHHHHSS--HHHHHHHHHHHHHHH CS
     Pkinase  84 eladllerkgslseeeakkiakqilegl 111
                 +l++l  r +++ e   ++++++++++l
  KKY22773.1 168 DLKTLRYRYRMFGEFLPESFIWHVFHSL 195
                 ****999999999999999999988877 PP

  == domain 2  score: 48.2 bits;  conditional E-value: 1.5e-16
                 TTEE-SS-SGGGEEEET.....TTE...........EEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHH...................TT..SCBS CS
     Pkinase 117 kgiiHrDlKpeNiLide.....kge...........lKitDFGlakelesssk...ltsfvgtseYlAPEvl...................ke..neys 175
                 ++++H DlK eNi++ e                   +K++DFG+a+  +++ +     +  gt+  ++PE                     k+  ++++
  KKY22773.1 222 NEVVHFDLKCENIFLGEpdletG-SdasaplrafpsIKLGDFGMAQVTSREDPwnpQLHWGGTQAKMPPEQDhlngsylrrwwprttkkpwKKtfRKFD 319
                 78*************97556550.155667777799**************999998445556666666664333444444444444455551155889* PP

                 HHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT........SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHT CS
     Pkinase 176 kkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg........etkeklpeaseiseeakdllkkllkkdpkkRltaeellq 260
                 +k  +W +G ++yell+   pf   +  ++ +k +++ + + +i +          k k  +++e s  +++l++++++ dp+kR+ta++l +
  KKY22773.1 320 EKHNIWCIGAVCYELLY-VLPFDLASAYNQGKKLYKDQHVVDEIHTargnpdkpGRKAKGSRDEEYSLALRELIRQCIHPDPEKRPTARQLFE 411
                 ***************76.678887777666666666655555555555677766556677777777***********************9976 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.1e-09   6.8e-06      45     257 ..     118     411 ..      71     413 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.1e-09
                  HHHHHHHHHHHHTS...-BTTB--EEEEEE....SSSS.EEEEEE--TTEBHHHHHHHT....................CTTTSBHHHHHHHHHHHHH CS
  Pkinase_Tyr  45 keelleeakimkkl...khpnivkllgvct....keep.llivteyvkgGdLlkfLrkk....................ekekltlkdllsfalqvAk 114
                  ++ + +ea+im ++   +++niv+l  +      k++p + + +ey+++GdL++ Lr +                    ++ ++t+k+    ++   +
   KKY22773.1 118 NKTVPTEANIMAQTnskNNQNIVQLKSFKRylnwKGNPkYRFFLEYCPHGDLKT-LRYRyrmfgeflpesfiwhvfhslARVAVTFKEEEWSTTSEEN 214
                  5677789****9985455789**99998777777555448899*********86.6666699**************9985555555555444444444 PP

                  HHHHHHHTTEEEST-SGGGEEEEE...............TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE................ CS
  Pkinase_Tyr 115 GmeyLeskklvHrdlaarNvLlse...............nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk................ 181
                    +  e++++vH dl + N++l e                  +k++DfG+a+ ++++d  + + +       m+pE  + +                 
   KKY22773.1 215 KESTPEENEVVHFDLKCENIFLGEpdletgsdasaplraFPSIKLGDFGMAQVTSREDPWNPQLHWGGTQAKMPPEQDHLNGsylrrwwprttkkpwk 312
                  55567999****************************998889************99999999999999999999997655555688999999999999 PP

                  .....EEHHHHHHHHHHHHHHHHTTSSGT...........TTTSHHHHHHHHH...H.......TTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HH CS
  Pkinase_Tyr 182 .....ftsksDvWsfGvllwEiftlgesp...........ypglkneevlekl...k.......egkrlekpekcpeelyelmkkcweedpeeRptfs 253
                       f +k  +W+ G +++E++                 y++    +v++ +   +       ++ + ++ e+ + +l el+++c + dpe+Rpt +
   KKY22773.1 313 ktfrkFDEKHNIWCIGAVCYELLYVLPFDlasaynqgkklYKDQ---HVVDEIhtaRgnpdkpgRKAKGSRDEEYSLALRELIRQCIHPDPEKRPTAR 407
                  **999*****************9854444566666655554444...33333321021111111334456678888899******************9 PP

                  HHHH CS
  Pkinase_Tyr 254 elve 257
                  +l e
   KKY22773.1 408 QLFE 411
                  9976 PP

>> DIX  DIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   3.4e-05       0.2       7      45 ..     114     160 ..     113     166 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.4e-05
         DIX   7 Yylddeevpyriki......pkrpdqiTLkdfKellpkkGn..yryf 45 
                 Y++++ +vp+  +i      +++++ + Lk fK++l+ kGn  yr+f
  KKY22773.1 114 YWTKNKTVPTEANImaqtnsKNNQNIVQLKSFKRYLNWKGNpkYRFF 160
                 6666667777777766666566778899************9556665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (996 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.51
# Mc/sec: 5832.22
//
Query:       KKY22774.1  [L=310]
Description: hypothetical protein UCRPC4_g03100 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2068.98
//
Query:       KKY22775.1  [L=676]
Description: putative transcriptional regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-43  148.6   0.2    1.1e-43  148.6   0.2    2.2  2  Ada3      Histone acetyltransferases subunit 3


Domain annotation for each model (and alignments):
>> Ada3  Histone acetyltransferases subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   3.6      0.27   4.8e+03      60     108 ..     102     158 ..      77     186 .. 0.66
   2 !  148.6   0.2     6e-48   1.1e-43       2     132 .]     492     628 ..     491     628 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.27
        Ada3  60 arLlelvkermayqeyqtiledlDkqvqqaYlK........rtrtlkkkkkkkrsga 108
                 a + +lv +r +  e q+  e l+ + +q   +        r r+  k kk+k +++
  KKY22775.1 102 AAMRQLVTRRREVAEEQREQERLEREAEQRRARkeadgdddRGRKAAKVKKRKDRSS 158
                 567778888888888888888888888888777788888887777777776665555 PP

  == domain 2  score: 148.6 bits;  conditional E-value: 6e-48
        Ada3   2 dyaqleeRlkqELreiGilepeedadkydgredDevaaeLrrlqaeLrevsliNgarkarLlelvkermayqeyqtiledlDkqvqqaYlKrtrtlkkk 100
                 + ++ eeRl+ ELr++G+l++ + +d y+g++dD+++++Lr+lq eL++v+ +NgarkarLle++ker+a+qey+ti+edlD+qvqqaYlKrtrt++k+
  KKY22775.1 492 ESNHAEERLRLELRHLGFLSDGDVPD-YEGHHDDDISERLRLLQGELKKVMITNGARKARLLEMTKERLAFQEYNTIHEDLDSQVQQAYLKRTRTIGKH 589
                 56789**************9999997.************************************************************************ PP

        Ada3 101 kkkkrsga.....aaaaaaagaarpg..igdalralmer 132
                 kk+ ++g+     a+  a +g  r+g  igd++r+l +r
  KKY22775.1 590 KKGGQHGKprpgtASVVAGNGIGRQGrdIGDMARMLIDR 628
                 ***998888888744444444444443389999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1390  (0.077528); expected 358.6 (0.02)
Passed bias filter:                      679  (0.0378716); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.47
# Mc/sec: 4320.61
//
Query:       KKY22776.1  [L=512]
Description: putative nitrogen permease regulator family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.5e-128  427.0   0.0   3.3e-127  424.9   0.0    1.8  1  NPR2      Nitrogen permease regulator 2


Domain annotation for each model (and alignments):
>> NPR2  Nitrogen permease regulator 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  424.9   0.0  1.8e-131  3.3e-127      16     437 ..       4     496 ..       1     499 [. 0.91

  Alignments for each domain:
  == domain 1  score: 424.9 bits;  conditional E-value: 1.8e-131
        NPR2  16 GtkivhqvPegsivtss.....esdekealFeFdtvknyviPkpqlcnrllslkinkykvlgyPvnienekYsRneFtFnfafvidydesdttpYesvv 109
                 G ki+hqvP  +i+ s+     ++ ++++lF+F+ +  +viP+++lc +l++++ + y+++gyP++++ ++Y+RneF+Fnf+fv+++d  + +p+ svv
  KKY22776.1   4 GPKIIHQVPSDAISGSHapvepSNPDSNTLFNFSDISFFVIPRQELCGNLITVCKDGYRIMGYPMCVKSSHYARNEFIFNFCFVLSED-EEFSPFKSVV 101
                 89************9999999888899*************************************************************.99******** PP

        NPR2 110 krlgrllrvlEeqnkfLskedkdvvffksaklaeadatvnvpgasklssieslieqileDLnnysEcviplddsnsvdlKLfPilpePvnikayqvPia 208
                 +++++l+r+lEeq++fLs++                     pg+ k   i+sl+e+++eDLnny+Ec+ip+dd n++++KLfP++ +P+++ka++vPi+
  KKY22776.1 102 QKMANLMRGLEEQSHFLSSDTS------------------KPGKGK---IYSLCEMLMEDLNNYAECMIPIDDVNTINMKLFPTYAPPPPVKAWHVPIM 179
                 ******************9776..................589999...************************************************** PP

        NPR2 209 tvklsslvdvnwDltlkkilpyinGinsvkriaeladadlsLtkqciqhLlyYkcielldiFqfsniYaptneigdFlkdegeiadeCqayvvveeskl 307
                 tv+ ++l d+nwDlt+++i+p+inGi  vk+ia ladadl Lt++ci+hL+yY+c+ lldiF+fs+iYap  + +  ++ +++++ eC+ y+ +  +  
  KKY22776.1 180 TVRPETLTDDNWDLTMQRIMPHINGISCVKQIAILADADLRLTRKCIKHLIYYSCVLLLDIFSFSAIYAPSTQFSSTIAADTDMQRECAIYINTAFAP- 277
                 *********************************************************************************************99444. PP

        NPR2 308 gsnsvspls..............ktsllsksskkvteakad......eeevevkvpskttlfrLyrslkqgqtvkeWvlqekkllagiDvrRliqFGvl 386
                  sn +s +s                     s   +++ +ad             v++   +++Ly +l qg +vk+W+ ++ + la+iD rR+i+FGv+
  KKY22776.1 278 SSNPTSGISdlpltsspssslrdP------SVLLTISSNADpaldifPVTATGLVVDGVAIVELYAALSQGLSVKQWYAEHASALANIDLRRFITFGVI 370
                 356666655677666653333331......2223333333210000023444556778899************************************** PP

        NPR2 387 kgliyrvhkypilnssak...........................................................................antllk 410
                 kg++yrvhky+ l+ sa                                                                            ++ l+ 
  KKY22776.1 371 KGFLYRVHKYAYLSGSAStrtnnagisnghgvphshnpaanenqphssvipmqsqesihsqatppglsvngvasghdgdsqtglndlsdpeftDQDLIP 469
                 ***********999877789************************************************************************9999*** PP

        NPR2 411 sldglkslDellkelkvkeekleeklk 437
                 +ldg + +D++++e+++ e +l ++l+
  KKY22776.1 470 YLDGSHPFDQICTEMEIGEASLVNRLR 496
                 *****************9999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3292.56
//
Query:       KKY22777.1  [L=410]
Description: hypothetical protein UCRPC4_g03103 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.024   15.1   0.1       0.17   12.4   0.1    2.2  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   9.7e-06      0.17      36      93 ..     312     374 ..     242     382 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.7e-06
                   EE-TT---EE.EETEEEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTGS.....EE CS
  2OG-FeII_Oxy  36 qddvgglevf.kdgkwlrvppvdnslivniGdallflsngryksvlHrVlpvneger.....Rv 93 
                    d++ gl++  ++g+ +++  + ++l  + G  l++++ g ++ v+H V+   +g r     R 
    KKY22777.1 312 PDPTSGLYIHsRSGTTTKIGIPRDCLAFQTGETLEVITKGMFRAVPHFVK-GAKGGRgtriaRN 374
                   46699999963557799999999**************************9.4444444544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.50
# Mc/sec: 2456.30
//
Query:       KKY22778.1  [L=358]
Description: putative frg1-like family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-17   61.8   4.0    7.3e-11   42.1   2.3    3.4  2  FRG1      FRG1-like domain
  ------ inclusion threshold ------
      0.019   15.2   0.0      0.092   13.0   0.0    2.0  2  Fascin    Fascin domain


Domain annotation for each model (and alignments):
>> FRG1  FRG1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     2e-06     0.018       2      40 ..      80     112 ..      79     122 .. 0.89
   2 !   42.1   2.3   8.1e-15   7.3e-11      40     191 .]     144     356 ..     138     356 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2e-06
        FRG1   2 sylealdeGdftigePhdegegPdPeevftavkvasdek 40 
                 ++le+l++G ++++ePhd+      + v+++ k+++  +
  KKY22778.1  80 AELENLIDGHPGTAEPHDV------RTVWVVGKIPGAVG 112
                 789****************......********998766 PP

  == domain 2  score: 42.1 bits;  conditional E-value: 8.1e-15
        FRG1  40 kislKsgyGkYlgvdkegilsaraeAisseEqfev.................................vfeegktallal................... 86 
                 ++ +Ks yG Ylgvd +g + a+  A+++ E f+v                                            +                   
  KKY22778.1 144 ELCFKSCYGNYLGVDGSGKVKATNVAVGKGETFKVydmmklkpdekvdrknpdprfviqtsisptsttS----------Speddsgkpsqiirpfnmip 232
                 578***************************************************996555555555550..........14555555555566666555 PP

        FRG1  87 ........aketflsvdeekd...ivakskkaae..eevveiRsdaeregktkdrirvedreklreke.skyvkkfqkiqdkkl......rldkedvkr 165
                          ++ +l+++++++   +v+ + +++    + + +R ++    +++++++++ ++ + +   ++       i++ +l       l +e+vk+
  KKY22778.1 233 ttssstppPSQNYLTITQSTSsspMVSIQTHTSPppTTNLILRLQTRF-LHPSTTTNTNTSGSIYNPPtTSSASTNPRISRSELekevgrNLTDEEVKK 330
                 544555566777877777665555333333222211233333433333.234444444444443333202233333466676667777*99******** PP

        FRG1 166 lkkarkeGnlhEvlLDrrvkmksDky 191
                 lkka k G+l E++L  rvk+  Dk+
  KKY22778.1 331 LKKAYKRGELREEMLNIRVKGGRDKF 356
                 *************************8 PP

>> Fascin  Fascin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.25   2.2e+03      81     110 ..      14      45 ..      12      46 .. 0.78
   2 ?   13.0   0.0     1e-05     0.092      77     111 .]     144     178 ..     137     178 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.25
                 EETTSCEEEECTTTEEEE..EESSSSGGGEEE CS
      Fascin  81 resngryLgigkeglLka..sastvgkdelft 110
                 ++s++r L  +++ +L++  +++++++d  +t
  KKY22778.1  14 KSSKKRKLDTDDTPTLSSdqNSTQPSEDDTWT 45 
                 56667777788888999987888999999997 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1e-05
                 EEEEEETTSCEEEECTTTEEEEEESSSSGGGEEEE CS
      Fascin  77 wallresngryLgigkeglLkasastvgkdelftl 111
                  + ++++ g yLg++++g++ka++ +vgk e f++
  KKY22778.1 144 ELCFKSCYGNYLGVDGSGKVKATNVAVGKGETFKV 178
                 567899*************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2271.35
//
Query:       KKY22779.1  [L=330]
Description: putative ring finger domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2283.78
//
Query:       KKY22780.1  [L=331]
Description: hypothetical protein UCRPC4_g03106 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.017   16.0   0.2      0.034   15.0   0.2    1.4  1  NDUFA12   NADH ubiquinone oxidoreductase subunit NDUFA12
        1.4    9.0   2.6        2.3    8.3   2.6    1.3  1  DUF1656   Protein of unknown function (DUF1656)


Domain annotation for each model (and alignments):
>> NDUFA12  NADH ubiquinone oxidoreductase subunit NDUFA12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.2   3.8e-06     0.034      21      78 ..     197     260 ..     176     268 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.8e-06
     NDUFA12  21 egrrrwveyaekak...dasqvppeWhgWlhhitdkppt...eekalkkrkwekehqenltgtk 78 
                 e++rr v  ae +    +++  + +W++Wl+ + d++     e +++ +++w ++h +  tg++
  KKY22780.1 197 ELNRRLVAAAEARLrgdNNAVFDEQWEQWLKEVMDRHAVlpqEVRQHMRERWVAQHGQGNTGST 260
                 478899998876447834555699********999886522144444599******99777765 PP

>> DUF1656  Protein of unknown function (DUF1656)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.6   0.00025       2.3      32      47 ..      67      82 ..      65      83 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00025
     DUF1656 32 rlglyrlvWhpaLfdl 47
                r +l+r+ Wh+ Lf++
  KKY22780.1 67 RRRLSRFPWHRRLFRA 82
                679***********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2439.79
//
Query:       KKY22781.1  [L=577]
Description: hypothetical protein UCRPC4_g03107 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4395.56
//
Query:       KKY22782.1  [L=618]
Description: putative dna repair [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-05   24.8   0.1    6.1e-05   23.2   0.1    1.8  1  DRMBL     DNA repair metallo-beta-lactamase


Domain annotation for each model (and alignments):
>> DRMBL  DNA repair metallo-beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   3.4e-09   6.1e-05      76     105 ..     321     350 ..     299     355 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3.4e-09
       DRMBL  76 iyrvpYSeHSSfrELkefvkslkpkkiipt 105
                 + + pYS HSS++EL++ v++++pk i p 
  KKY22782.1 321 TVHFPYSRHSSYSELCHLVSAFRPKDIHPC 350
                 5788***********************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1776  (0.0990574); expected 358.6 (0.02)
Passed bias filter:                      708  (0.0394891); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.38s 00:00:01.28 Elapsed: 00:00:00.58
# Mc/sec: 3212.58
//
Query:       KKY22783.1  [L=442]
Description: putative lysyl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-67  227.7   0.0      7e-67  225.7   0.0    1.7  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    1.8e-06   27.6   0.1     0.0013   18.3   0.0    2.3  2  tRNA-synt_2d     tRNA synthetases class II core domain (F)
  ------ inclusion threshold ------
      0.047   13.7   0.0      0.082   12.9   0.0    1.4  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
       0.21   11.0   0.2       0.41   10.0   0.2    1.4  1  UCR_Fe-S_N       Ubiquitinol-cytochrome C reductase Fe-S subu


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.7   0.0   1.6e-70     7e-67       7     312 ..      69     431 ..      63     433 .. 0.89

  Alignments for each domain:
  == domain 1  score: 225.7 bits;  conditional E-value: 1.6e-70
                  HTHHHHC.CSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE-E-S-SHHHHHHHHHCTHSEEEEEEEEE-- CS
                  xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   7 knryldl.rtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeffaLtqspqlylellivagidrvfqiaraFRa 103
                    r+++l  t++v +++r+rst+++++r++l+++ fie++tPiL   ++++ ar+F +k  e  ++  aL+++p+l+l++li +g+++vf+i+++FR+
   KKY22783.1  69 ADRHVQLlSTKNVMETIRCRSTIIRSLRNFLSRRSFIEVDTPILGAVASGATARPFETKATEFLDRRLALRIAPELWLKRLILGGFEKVFEIGPSFRN 166
                  57999999**************************************************66665444448***************************** PP

                  S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTS.EE-SSS-EEEEHHHHHHHHHTS........-SS--HHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxx RF
  tRNA-synt_2 104 EdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrns.kdlkkpfkrltykeaieklnei........gkdldkade 192
                  E +++++++ EFt++e+++  ++ +d+m+++e l++++  +v +++++ + ++    s ++++ +f+rl++  ++e++ +         +        
   KKY22783.1 167 EGLDKTHNP-EFTTCEFYTTHTSLNDLMSMTEALLHYIHLQVSQEHTSSLATTLPVLSkDQFSGSFPRLPFIPTLENALGLylpplhspD-------- 255
                  *********.********************************99998888888888776788888************6555555555551........ PP

                  HHHHH......................................HS--SEEEEEEEBGGGSTTCBBBSTTS..TTBBSEEEEEETTEEEEEEEEB--SH CS
                  xxxxx......................................xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 193 ralvk......................................keknepvfvtdfPaelkpFyarkeedd..kkltesyDllingvElvgGslRiedp 250
                      +                                      +++ +p+f+t++P+ l+p+ ++  +    +kl+++ +l+ing E+++ + ++++p
   KKY22783.1 256 ----TlstenalkqifhqkslplpqlptiprlldklsaiylepRCIDRPTFITHHPECLSPLSKSYLDPIthQKLSARAELFINGREIANMYEEENSP 349
                  ....333444555555567777777777777888888888888********************9988766679************************* PP

                  HHHHHHHHHCCHH....................SSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-X CS
                  xxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 251 eeleeklkskgld....................eeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPk 312
                   e+++k++ ++                      +e+ e++  yleale+G+pp+gG+g+G+dRlvml++g+e+I dv+ F +
   KKY22783.1 350 FEQKKKFDMQNTFtarakqlvaadqskssaldqDETLESDTSYLEALEWGLPPTGGWGCGVDRLVMLFTGKEKISDVLTFGN 431
                  ********9998778899999******99999999999******************************************86 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.9e-07    0.0013     103     152 ..     156     203 ..     153     213 .. 0.89
   2 !    6.9   0.0   0.00086       3.8     212     235 ..     404     427 ..     393     437 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.9e-07
                   EEEEEEEEEBSST-SSSB-SEEEEEEEEEEETT--HHHHHHHHHHHHHHH CS
  tRNA-synt_2d 103 kiisigrvfRrdavDathlaeFhqveglvvdenvsladlkgvleellkkl 152
                   k++ ig  fR++ +D+th +eF+ +e+     + sl+dl+ + e+ll+++
    KKY22783.1 156 KVFEIGPSFRNEGLDKTHNPEFTTCEFYTT--HTSLNDLMSMTEALLHYI 203
                   899***********************9876..57899******9999987 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00086
                   EEEEEEHHHHHHHHHT-SSGHHHH CS
  tRNA-synt_2d 212 fafGlGveRlamlkygieDiRelv 235
                    ++G Gv+Rl ml +g e i +++
    KKY22783.1 404 GGWGCGVDRLVMLFTGKEKISDVL 427
                   58************9988887655 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.8e-05     0.082      44      73 ..      11      40 ..       2      43 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.8e-05
                     TTS-TTSEEEEEEEEEECTTSSEEEEEEEE CS
  tRNA_anti-codon 44 enlkeGdvvrvtGrvkrrpggelelkveei 73
                     ++l +Gdv+ v+G+  r+++gel++k+ +i
       KKY22783.1 11 NDLSRGDVISVRGYAHRTERGELSIKAVDI 40
                     789***********************9877 PP

>> UCR_Fe-S_N  Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2   9.2e-05      0.41      10      34 ..     100     124 ..      96     124 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 9.2e-05
  UCR_Fe-S_N  10 tRRDFLyiATgavgaVGaaaaawPf 34 
                 +RR F+ + T  +gaV+ +a+a Pf
  KKY22783.1 100 SRRSFIEVDTPILGAVASGATARPF 124
                 8***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.53
# Mc/sec: 2512.21
//
Query:       KKY22784.1  [L=98]
Description: putative mitochondrial intermembrane space translocase subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-21   76.3   0.7    1.2e-21   76.1   0.7    1.1  1  zf-Tim10_DDP  Tim10/DDP family zinc finger


Domain annotation for each model (and alignments):
>> zf-Tim10_DDP  Tim10/DDP family zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.7   6.7e-26   1.2e-21       2      63 ..      18      80 ..      17      81 .. 0.95

  Alignments for each domain:
  == domain 1  score: 76.1 bits;  conditional E-value: 6.7e-26
  zf-Tim10_DDP  2 qleqeqqvanaqelvnkltekCfkkCi.gkypgssLdsseesCldnCvdryldvsnlvskrlq 63
                  + ++e++v+ + +++n+lt++C kkCi  +y++++L+++e++Cld+Cv+++++v+ +vs+++q
    KKY22784.1 18 IAAAETEVELVSDMFNRLTQSCVKKCIpADYREGELNKGESVCLDRCVAKFFEVNVKVSEKMQ 80
                  5689***********************767*******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 662.91
//
Query:       KKY22785.1  [L=774]
Description: putative sin3 complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0023   18.1   2.2      0.063   13.5   0.0    3.1  3  PG_binding_1  Putative peptidoglycan binding domain
  ------ inclusion threshold ------
       0.02   15.1   0.2       0.13   12.5   0.0    2.4  2  XhlA          Haemolysin XhlA
      0.047   13.7   0.2      0.091   12.8   0.2    1.4  1  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C
      0.047   11.7   3.8      0.068   11.1   3.8    1.1  1  Prominin      Prominin
       0.52   10.4   5.2        1.1    9.3   5.2    1.6  1  UPF0242       Uncharacterised protein family (UPF0242) N-term


Domain annotation for each model (and alignments):
>> PG_binding_1  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.03   1.1e+02      41      57 .]     198     215 ..     196     215 .. 0.82
   2 !   13.5   0.0   1.8e-05     0.063      11      57 .]     225     270 ..     223     270 .. 0.85
   3 ?   -2.5   0.2       1.7     6e+03      34      40 ..     623     629 ..     621     632 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.03
                   TTST.-SSSBSHHHHHHH CS
  PG_binding_1  41 fgLp.vtGildpaTlaal 57 
                   f+L+  +Gil+p T+ al
    KKY22785.1 198 FNLEpNDGILGPTTVSAL 215
                   6777679*******9987 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.8e-05
                   HHHHTT--.SSSSSB--HHHHHHHHHHHHHTTST-SSSBSHHHHHHH CS
  PG_binding_1  11 yLsrlGylsgpadgtfgpateeaVkefQqffgLpvtGildpaTlaal 57 
                   +L+++G  + ++d    +at++a+  fQ+ ++Lp t +ld++T+++l
    KKY22785.1 225 RLKAFGA-PVAKDPFEVDATKRALSYFQKTQKLPRTRRLDRQTVEKL 270
                   6777777.36777777789*************************987 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.7
                   HHHHHHH CS
  PG_binding_1  34 VkefQqf 40 
                   V+++Qq+
    KKY22785.1 623 VQRMQQH 629
                   99****8 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1         1   3.7e+03      20      37 ..     661     678 ..     646     686 .. 0.67
   2 ?   12.5   0.0   3.7e-05      0.13       9      48 ..     718     757 ..     716     764 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1
        XhlA  20 vdkleekaaeaeekiknl 37 
                 +d+lee + ++ e++ +l
  KKY22785.1 661 IDDLEEFEQRQTEELSQL 678
                 667777666666666554 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.7e-05
        XhlA   9 ietkldnleervdkleekaaeaeekiknleedlkklesnq 48 
                 ++ +l+ le+r++++e+  + +e++i+ +e ++ +l + +
  KKY22785.1 718 LDYELNALESRIEDVEDGITAFEQSIIDIEGRIQNLVKDN 757
                 66789******************************99876 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   2.5e-05     0.091      32     113 ..     671     755 ..     643     761 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.5e-05
  Baculo_PEP_C  32 ilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq...dtlrneLtnlnsiltnLlssvtNinstLnnllq 113
                    + +l++l ++   ++ +++++ k+l ++ + rl++++ ++++  ++l    ++l+++++ ++  +t    s+  i+  ++nl++
    KKY22785.1 671 QTEELSQLYNEKLDEFLTIKTHSKELFNDERGRLEENVRKVDTLGAKLDyelNALESRIEDVEDGITAFEQSIIDIEGRIQNLVK 755
                   34678888888888899999999********************9999999999999**************************997 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.8   1.9e-05     0.068     606     719 ..     638     747 ..     606     757 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.9e-05
    Prominin 606 skihsslyleqlckkltkvnletlaekleelanelsngkknlkqslkneaqdlraiqqelvlplessvkklkksvkkldeensdlqesikkllaavera 704
                 +  +   +le+++ ++t++n+  + ++lee+ ++++++   l+q ++++  ++ +i+++  +  + +   l+++v+k+d+ + +l  +++ l +++e+ 
  KKY22785.1 638 DLAKKVVFLEKVTLRFTQMNV-DVIDDLEEFEQRQTEE---LSQLYNEKLDEFLTIKTHSKELFNDERGRLEENVRKVDTLGAKLDYELNALESRIEDV 732
                 44556689*************.566899*******555...99999999999999*9999999*****************9999999999999999999 PP

    Prominin 705 enflkkngseiinne 719
                 e+ +++  ++ii  e
  KKY22785.1 733 EDGITAFEQSIIDIE 747
                 999999888888655 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   5.2   0.00031       1.1      80     187 ..     618     723 ..     592     755 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00031
     UPF0242  80 ldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiae.dfeelkleleeqLaekqellqeyqetieeqrsvlekrqdqieqLes 177
                  d +l +  ++ e + +  ++L++++   e+   r ++ n  +   le+  + + eel++ ++e+L+e  +   +++e +++ r  le+   ++  L +
  KKY22785.1 618 PDTDLVQRMQQHESMSKIRRDLAKKVVFLEKVTLRFTQMNVDVIDDLEEFEQrQTEELSQLYNEKLDEFLTIKTHSKELFNDERGRLEENVRKVDTLGA 716
                 3355778888888888999999999999999999999999999999988755599999999*****99999999999999****999999999999999 PP

     UPF0242 178 kVrDlnyEik 187
                 k   l yE+ 
  KKY22785.1 717 K---LDYELN 723
                 9...456665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (774 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.21s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 5981.91
//
Query:       KKY22786.1  [L=378]
Description: putative rmnd5a protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-33  114.8   0.0    4.4e-33  114.3   0.0    1.3  1  CLTH          CTLH/CRA C-terminal to LisH motif domain
    3.6e-08   33.3   0.3    6.6e-08   32.5   0.3    1.4  1  zf-RING_UBOX  RING-type zinc-finger
    0.00017   21.5   0.3    0.00032   20.6   0.3    1.5  1  zf-RING_5     zinc-RING finger domain
    0.00088   19.6   0.6     0.0016   18.7   0.6    1.5  1  zf-RING_2     Ring finger domain
    0.00091   18.7   0.0     0.0013   18.1   0.0    1.2  1  Rtf2          Rtf2 RING-finger
      0.007   16.2   1.1      0.014   15.3   1.1    1.5  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.016   15.1   0.9       0.03   14.2   0.9    1.5  1  Prok-RING_4   Prokaryotic RING finger family 4
      0.042   13.7   0.5      0.076   12.9   0.5    1.3  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
      0.047   13.8   1.0      0.092   12.9   1.0    1.5  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
      0.078   12.9   0.6       0.16   11.9   0.6    1.5  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> CLTH  CTLH/CRA C-terminal to LisH motif domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   0.0   2.4e-36   4.4e-33       2     147 ..     132     285 ..     131     286 .. 0.92

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 2.4e-36
        CLTH   2 ikerqkIikli.legdlseaiewinenkpellesnsnLeFkLkllqfielirg..........ktkdieealeyarenlefendehlkelekamsLLaf 89 
                 ++ ++ I ++  +e++l++ai w+ e++ el+ + snLeF+L +lqf+ +++g            +   +a+ yar++++++++ +l e++++m++La+
  KKY22786.1 132 FETMYYILHAMrEEKRLDPAITWAREHSRELEIRGSNLEFELCRLQFVDIFQGrgdddseeamM-ERQFQAIGYARKEFQAFHSRYLSEIQQLMGALAY 229
                 788999**********************************************977666544421.4589**********877777************** PP

        CLTH  90 sdpeskelssplknlldp.srrekvakefnsailkllglskespLeillsaglsalktl 147
                 +++ +    sp+++l+++   +++va+ f+++++++l+ls +spL i+ +ag++al+tl
  KKY22786.1 230 CPNLD---ESPYRSLFNDrIAWDEVANSFTREFCSMLKLSADSPLYIATTAGAIALPTL 285
                 **666...99********9**************************************98 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.3   3.7e-11   6.6e-08       1      39 []     323     362 ..     323     362 .. 0.93

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 3.7e-11
  zf-RING_UBOX   1 CpIClelft..dP.lvlpCGHtFCreClwelskslegafkCP 39 
                   Cp+++e+ t  +P +++pCGH++ +e l  ++ s++ +fkCP
    KKY22786.1 323 CPVSKEQTTdqNPpMMMPCGHVIAQESL--SRLSKGSRFKCP 362
                   *********99777667***********..8**********9 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.3   1.8e-07   0.00032       2      42 ..     323     364 ..     322     366 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.8e-07
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll.ekeavCpiC 42 
                 C++  e+++++ ++++++CgH++ ++ l++l+ +++++Cp C
  KKY22786.1 323 CPVSKEQTTDQNPPMMMPCGHVIAQESLSRLSkGSRFKCPYC 364
                 8888888999999***************************** PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.6   9.1e-07    0.0016       3      43 ..     323     364 ..     321     365 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 9.1e-07
   zf-RING_2   3 CpICleelssadsvlllpCgHvfhreClerwlrssst..CPlC 43 
                 Cp+  e+ ++++ ++ +pCgHv+ +e l+r l + s+  CP+C
  KKY22786.1 323 CPVSKEQTTDQNPPMMMPCGHVIAQESLSR-LSKGSRfkCPYC 364
                 77776677776667788*************.66776779**** PP

>> Rtf2  Rtf2 RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   7.4e-07    0.0013     112     161 ..     318     369 ..     287     377 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 7.4e-07
        Rtf2 112 eapfiCpltglemngktkfvalrkCGcVfsekalkevk...sevClvCgkeyk 161
                 ++ f+Cp+++ +  +++   ++++CG+V++++ l  +      +C+ C +e +
  KKY22786.1 318 HSIFVCPVSKEQTTDQNPP-MMMPCGHVIAQESLSRLSkgsRFKCPYCPNESH 369
                 567*********9998886.578***********9996465556**9987655 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.1   7.6e-06     0.014      10      40 .]     333     364 ..     322     364 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.6e-06
  zf-C3HC4_2  10 kdpsvvtpCgHvfCqkCilrsLeekn..eCPlC 40 
                 ++p ++ pCgHv  q+ + r L++++  +CP C
  KKY22786.1 333 QNPPMMMPCGHVIAQESLSR-LSKGSrfKCPYC 364
                 5788****************.5666559***** PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.9   1.7e-05      0.03       6      39 ..     331     367 ..     322     373 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.7e-05
  Prok-RING_4   6 eqekkailepCgHlvCkeCfdsk.dls..sCPlCqrr 39 
                  + ++ +++ pCgH++ +e ++   + s   CP C ++
   KKY22786.1 331 TDQNPPMMMPCGHVIAQESLSRLsKGSrfKCPYCPNE 367
                  44777899***********99884445899****877 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.5   4.2e-05     0.076      15      44 ..     336     365 ..     321     369 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-05
                 EEETTEEEEEE-HHHHHHHHH.TT-B-TTT- CS
  zf-C3HC4_3  15 vvllpCgHlvlCeeCaekllk.rkkkCpiCr 44 
                  +++pCgH+ + +e +++l k ++ kCp+C 
  KKY22786.1 336 PMMMPCGHV-IAQESLSRLSKgSRFKCPYCP 365
                 6899*****.99*******999********6 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.0   5.1e-05     0.092      11      42 .]     336     364 ..     323     364 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.1e-05
  zf-C3HC4_4  11 PvsleCGhsfClsCisslqkepdgeqllCplC 42 
                 P+ ++CGh++ ++ +s+l+k +    + Cp C
  KKY22786.1 336 PMMMPCGHVIAQESLSRLSKGS---RFKCPYC 364
                 9************999999887...699***9 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.6   8.7e-05      0.16       1      41 []     323     364 ..     323     364 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.7e-05
                 -TTT-S--SS-E...E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn..elleCkHsfCskCirkilksrkkvkCPlC 41 
                 Cp+ +e  +++n  ++++C+H + ++ ++++ k  + +kCP C
  KKY22786.1 323 CPVSKEQTTDQNppMMMPCGHVIAQESLSRLSK-GSRFKCPYC 364
                 666666666666779******************.999*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.50
# Mc/sec: 2275.41
//
Query:       KKY22787.1  [L=188]
Description: hypothetical protein UCRPC4_g03113 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.8   0.0       0.45   10.8   0.0    2.0  2  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.5e-05      0.45      47      75 ..       6      34 ..       1      50 [. 0.82
   2 ?   -1.5   0.0      0.16   2.9e+03      20      35 ..     123     138 ..     119     151 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.5e-05
                TTCCCEEEEETTSGHHHHHHHHHHHHHSE CS
         BTB 47 eessvseielddvepeafealLefiYtge 75
                ++ s+++i l++ +pe++ ++Le++Y g 
  KKY22787.1  6 QDPSNKKIILPEEHPEVLSSVLEYLYKGD 34
                445556799*****************986 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.16
                 TEEEEE-HHHHHHH-H CS
         BTB  20 gkefkahkavLaarSp 35 
                 +++++ah + L  rS 
  KKY22787.1 123 DSKLRAHYLALIIRSR 138
                 4789999999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1508.20
//
Query:       KKY22788.1  [L=404]
Description: putative cop9 signalosome complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-09   38.3   0.0    2.7e-09   37.5   0.0    1.5  1  PCI       PCI domain
  ------ inclusion threshold ------
      0.074   13.2   0.2       0.24   11.6   0.2    1.9  1  TPR_2     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0     3e-13   2.7e-09       3     105 .]     273     394 ..     271     394 .. 0.96

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 3e-13
                 HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH..............CESEEEHHHHHHHHTSSH......HHHHHHH CS
         PCI   3 ysdllkalrsgnlsgfseelkdleeelladdglaqllesLekkvrerllrqvsk..............iyssislerlaklldlsv......devEkil 81 
                 ++ l +++++g+l+gf+ ++    e+ + ++ ++  le+ ++ + ++l r+v+                 ++++++++a +  l +      devE++l
  KKY22788.1 273 FRPLCQCIKKGDLAGFDAAMLAG-EQEFVKRRIYLTLERGRDIALRNLCRKVFIaggfdeskngespiRRTRVPMAEFAAAMRLGNqtsiddDEVECFL 370
                 7899*******************.777777*************************************999***************************** PP

                 HHHHHTTSSSEEEETTTTEEEECS CS
         PCI  82 vklIrdgeirakidqesgivvfkk 105
                 ++lI++++++++i +e givv++k
  KKY22788.1 371 ANLIYKNLMKGYIARERGIVVLSK 394
                 *********************986 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   2.6e-05      0.24       5      27 ..     205     227 ..     201     232 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.6e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekA 27 
                 y++G +++   +y eA++++ +A
  KKY22788.1 205 YYRGVIAFLDENYSEAEQYLTEA 227
                 9********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2700.61
//
Query:       KKY22789.1  [L=174]
Description: putative 60s ribosomal protein l20 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.3e-56  187.3   0.9    1.1e-55  187.0   0.9    1.1  1  Ribosomal_L18A  Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A


Domain annotation for each model (and alignments):
>> Ribosomal_L18A  Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.0   0.9   5.9e-60   1.1e-55       1     120 [.       4     126 ..       4     127 .. 0.99

  Alignments for each domain:
  == domain 1  score: 187.0 bits;  conditional E-value: 5.9e-60
                     -EEEEEEEEEEET....................................................................TEEEEEEEEEEESS CS
  Ribosomal_L18A   1 lkeYeVvGrklpsekepepkvyrmrifapnevvak...wyflkklkkvkkanGeilavkkieekkptkvknygiwlrydsrsgthnfykeyrdlt 92 
                     l+eY+V+Gr+lp+e++p+pk+yrmrifapn+vvak   wyfl kl+kvkk+nGei++++ i+ek+p+kvkn+giw+rydsrsgthn+ykeyr++t
      KKY22789.1   4 LQEYQVIGRHLPTEANPTPKLYRMRIFAPNTVVAKsrfWYFLMKLRKVKKSNGEIVSLNVINEKRPLKVKNFGIWIRYDSRSGTHNMYKEYREMT 98 
                     589******************************************************************************************** PP

                     HHHHHHHHHHHHHHHS---GGGEEEEEE CS
  Ribosomal_L18A  93 eegaveqvYselgsrhrakrssIqIekv 120
                     +++ave +Ys++++rhra+ +sI+I+kv
      KKY22789.1  99 RTEAVESLYSDMAARHRARFRSIHILKV 126
                     **************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1180.03
//
Query:       KKY22790.1  [L=333]
Description: putative nadh-cytochrome b5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-32  110.3   0.0    1.5e-31  109.3   0.0    1.5  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    2.5e-21   75.9   0.0    5.2e-21   74.9   0.0    1.6  1  FAD_binding_6  Oxidoreductase FAD-binding domain
    5.4e-11   42.9   0.0    7.8e-06   26.1   0.0    2.4  2  NAD_binding_6  Ferric reductase NAD binding domain
  ------ inclusion threshold ------
       0.13   12.5   0.0        0.3   11.3   0.0    1.6  1  FAD_binding_9  Siderophore-interacting FAD-binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.3   0.0   3.3e-35   1.5e-31       1     108 [.     196     304 ..     196     305 .. 0.98

  Alignments for each domain:
  == domain 1  score: 109.3 bits;  conditional E-value: 3.3e-35
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH.HSSTTEEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleells.lkkeethv 95 
                    +iagGtGi+P+++++rai+++++dktkv+l++Gn +eed+l+++el+ l++++p+r+k +++++ ++++w +gkg v+++ll+++l+  k+++  v
     KKY22790.1 196 LIAGGTGITPMYQLIRAIFKNPEDKTKVTLIFGNLKEEDILLKKELQDLENTYPRRFKAFYTLDTPPESWPYGKGAVTKELLKTVLPePKENNIKV 291
                    7**************************************************************************************8889999** PP

                    EEECSHHHHHHHH CS
  NAD_binding_1  96 yvCGppgMikavr 108
                    +vCGppgM ka++
     KKY22790.1 292 FVCGPPGMYKAIS 304
                    *********9975 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.0   1.2e-24   5.2e-21       3      96 ..      88     183 ..      86     186 .. 0.93

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 1.2e-24
                    EEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEEC..ETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHHHCS-TT-EEEEEEEE-S CS
  FAD_binding_6   3 kltekeevsedtrifrfklpsekqklglpvGqhvflrlk..ikgeaviRsYtpissenekGelellvkvypgGkmsqaLdelkigdtleikGPlGk 96 
                    kl++    +++t+ f f+lps +++ gl +++ +  +++   +++  +R+Ytpis+e+ekG+l llvk+yp+G ms++L+++++g+ l++kGPl k
     KKY22790.1  88 KLKKIVPYNHNTSEFIFELPSGDHVSGLNIASAILTKYQseKHEKPTLRPYTPISDEDEKGQLTLLVKKYPNGPMSEHLHSMAPGQRLDFKGPLPK 183
                    677888889******************************65567889**********************************************866 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.7e-09   7.8e-06       1      75 [.     191     257 ..     191     264 .. 0.82
   2 !   14.3   0.0   7.4e-06     0.033     122     151 ..     274     303 ..     267     306 .. 0.89

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.7e-09
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   1 yenvllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeeksegnieihiYlT 75 
                    +e++ l+agG+Gitp++ +++ ++k+ +    +++k++li+ + +++++ + k+ L+ le++ ++   + ++++T
     KKY22790.1 191 HEHIALIAGGTGITPMYQLIRAIFKNPE----DKTKVTLIFGNLKEEDILL-KKELQDLENTYPR---RFKAFYT 257
                    789************************9....999******9999999855.5477777776666...5555555 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 7.4e-06
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 122 kevlkdiaskhknssvgvfvCGppklvkev 151
                    ke+lk++  + k++++ vfvCGpp++ k +
     KKY22790.1 274 KELLKTVLPEPKENNIKVFVCGPPGMYKAI 303
                    68899999999***************9876 PP

>> FAD_binding_9  Siderophore-interacting FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.6e-05       0.3      53     117 ..     118     180 ..      93     184 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.6e-05
  FAD_binding_9  53 teeglqeweelpederpvmRtYtvraldaeaeeldidfvlHgdegpaarwAaqAqpGdelaivgP 117
                    ++  l+++ + ++ e+p++R Yt+ + + e+++l++  v    +gp ++   + +pG++l + gP
     KKY22790.1 118 ASAILTKY-QSEKHEKPTLRPYTPISDEDEKGQLTLL-VKKYPNGPMSEHLHSMAPGQRLDFKGP 180
                    55555566.678999*********9999999999984.555556******************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2305.38
//
Query:       KKY22791.1  [L=285]
Description: putative hmg box [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-09   36.0   1.8    6.7e-09   36.0   1.8    1.6  2  HMG_box    HMG (high mobility group) box
    4.1e-05   24.1   1.2    0.00011   22.7   1.2    1.8  1  HMG_box_2  HMG-box domain


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   1.8   7.5e-13   6.7e-09       1      69 []     111     180 ..     111     180 .. 0.96
   2 ?   -4.1   0.5         2   1.8e+04      47      47 ..     256     256 ..     247     267 .. 0.51

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 7.5e-13
                 --SS--HHHHHHHHHHHHHHHHSTTS-.HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfskeqraklkaenPelk.naeiskklgekWkalseeeKkkYeekaekekaryekekpeyk 69 
                 pkR+l+ +fl+++  r k+++e  e+   +e++ +  ++W a+ ++eK  + + ++k    y++++++yk
  KKY22791.1 111 PKRALTPYFLYMQSARSKIASELGENAkPKEVADEGTRRWAAMGDAEKSVWNNTYAKNLSIYREKIKAYK 180
                 8*********************987655*****************************************8 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 2
                 H CS
     HMG_box  47 K 47 
                 K
  KKY22791.1 256 K 256
                 1 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   1.2   1.2e-08   0.00011       1      55 [.     108     162 ..     108     181 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.2e-08
                 ---.-SS--HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHHHH CS
   HMG_box_2   1 pkkpkaarnAYalfvqemipelkrkGnpviglaevsklcsekWkalseeeKekYe 55 
                 p+ pk+a   Y+l++q  + ++  +  + ++ +ev  +   +W+a+ ++eK+ ++
  KKY22791.1 108 PNAPKRALTPYFLYMQSARSKIASELGENAKPKEVADEGTRRWAAMGDAEKSVWN 162
                 789**********************778999********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1066  (0.0594567); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.49
# Mc/sec: 1745.96
//
Query:       KKY22792.1  [L=1175]
Description: putative urease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-76  255.5   0.7    1.7e-75  254.5   0.7    1.5  1  Amidohydro_1  Amidohydrolase family
    9.8e-54  180.8   0.9      2e-53  179.9   0.9    1.5  1  Urease_alpha  Urease alpha-subunit, N-terminal domain
    3.3e-41  139.3   0.2      1e-40  137.7   0.0    1.9  2  Urease_beta   Urease beta subunit
    2.9e-36  123.7   0.1    1.2e-35  121.7   0.0    2.0  2  Urease_gamma  Urease, gamma subunit
    3.8e-24   85.2   0.0    7.4e-24   84.2   0.0    1.4  1  SAD_SRA       SAD/SRA domain
    1.1e-09   38.3   0.4    8.3e-06   25.5   0.0    2.3  2  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.5   0.7   5.8e-79   1.7e-75       1     339 [.     735    1064 ..     735    1071 .. 0.98

  Alignments for each domain:
  == domain 1  score: 254.5 bits;  conditional E-value: 5.8e-79
                    EEEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH....HHHHHHHHHHTSSSEEEEEEESSEGGSGCC CS
  Amidohydro_1    1 ivlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattst....giealleaaeelplglrilggkvsldrgsa 91  
                    iv++G+ D+H+H+              ++p++a+e + sgi+t l++Gt++ a+++att+t    +i+++l+a++elpl+++i g+      g++
    KKY22792.1  735 IVTAGGFDSHIHF--------------ICPQQAYESISSGITTILGGGTGPSAGTNATTCTpgktHIKRMLQACDELPLNVGITGK------GND 809 
                    79***********..............***********************************************************......*** PP

                    CSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEE..TSSCHHHHHHHHHHTTTEEEETTTTSTCCHHT CS
  Amidohydro_1   92 etskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHa..letkgevedaeaafgetiehgthlevaeslgl 184 
                    + ++a+ e+ +ag+              +l+ he++++++++++ +l++++++d++  iH+  l+++g+ve++++a++++++h++h+e+a+++++
    KKY22792.1  810 SDPRALQEQAVAGV-------------CGLKLHEDWGTTPAAIDTCLSVCDEHDIQTLIHTdtLNESGFVEQTIKAIKGRAIHTYHTEGAGGGHA 891 
                    *************9.............8******************************************************************* PP

                    TTHCCEEEHCTCEEE...HH...HHHHHHHHHHHHCEE.........HHHHHHHHSEHHHHHHHHHHHH.TSCEEEEEECTTSSCCGGHHHH... CS
  Amidohydro_1  185 ldeiklilahgvhlt...pt...eaellkerlkeagva.........hcpfsnsilrsgrealrkalde.GvkvglgtDgaasgnslnllee... 260 
                    +d+i ++ + +v+++   pt   + ++l+e+l++ +v+         +++f++s++r +++a++++l++ G+++++++D++a+g++++++ +   
    KKY22792.1  892 PDIISVVEHPNVLPSstnPTrpyTRNTLDEHLDMLMVChhlsknipeDIAFAESRIRAETIAAEDVLHDlGAISMMSSDSQAMGRCGEVILRtwh 986 
                    ***************76655999*********************************************************************9** PP

                    HHHHHHHHHHCCTT...TTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSEEEEEEEE CS
  Amidohydro_1  261 lrlalklqrgllye...deegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaafvglkkdgnvkkviv 339 
                    ++++ k+qrg+l e    +++++++k++++++Tin+A+  g+++ +Gs+evGk ADlv++     +a +g+k++   k++++
    KKY22792.1  987 TAHKNKVQRGQLPEdegTGADNFRVKRYISKYTINPAITQGMSHVIGSVEVGKLADLVLW----SPANFGTKPKTVLKSGMI 1064
                    **************999889****************************************....*********999999998 PP

>> Urease_alpha  Urease alpha-subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.9   0.9   6.5e-57     2e-53       2     121 .]     610     729 ..     609     729 .. 0.99

  Alignments for each domain:
  == domain 1  score: 179.9 bits;  conditional E-value: 6.5e-57
  Urease_alpha   2 klsreeyaelyGptvgDrvrLadtellievekDltvyGeevkfGggkviRdgmgqssaakeeealDlvitnavilDatgivkadigikdgrivaiGk 98 
                   +++re+y  ++Gpt+gD +rL+ t+l+i+vekDlt+yG+e+kfGggk++R+gmgq++ + ++e+lD+vi+na+i+D++gi+kadigik g iv+iGk
    KKY22792.1 610 SMTREAYCGMFGPTTGDLIRLGATDLWIKVEKDLTHYGDECKFGGGKTLREGMGQATGRPDTESLDTVIVNALIVDWSGIYKADIGIKYGVIVGIGK 706
                   699********************************************************************************************** PP

  Urease_alpha  99 agnpdvmdgvdeelvigastevi 121
                   agnpdvm+gvd+++v+g++t+vi
    KKY22792.1 707 AGNPDVMEGVDPSMVVGSNTDVI 729
                   *********************98 PP

>> Urease_beta  Urease beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.4     4e+03      49      66 ..     357     376 ..     352     380 .. 0.81
   2 !  137.7   0.0   3.5e-44     1e-40       1      97 [.     477     574 ..     477     575 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.4
                  S..-HHHHTTEEE-SSTT-E CS
  Urease_beta  49 f..dRekalGlrldipagta 66 
                  f  +R+ a+G++l+ + +ta
   KKY22792.1 357 FlaQRRLARGVKLNHAEATA 376
                  5558999*******998887 PP

  == domain 2  score: 137.7 bits;  conditional E-value: 3.5e-44
                  TT-EE-.SSSEEETTTT---EEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEEE-STT-EE-STTSS--E CS
  Urease_beta   1 pgeiit.eegeielnagretiklkvantgdrpiqvgshyhflevnkaLefdRekalGlrldipagtavrfepgeekevelvelaGerkvyGlnglvng 97 
                  pg++i  +eg+i ln+gr++i+lkv+++gdrpiqvgshyhf+e+n++LefdR +++G+rldi+agt+vrfepg++k+v+lve++G+r ++G n ++ g
   KKY22792.1 477 PGAVIPvKEGRIVLNEGRKRITLKVTSKGDRPIQVGSHYHFIETNPQLEFDRIRSYGYRLDIAAGTSVRFEPGDTKTVTLVEIGGNRIIHGGNWNAAG 574
                  678777699***********************************************************************************988776 PP

>> Urease_gamma  Urease, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.7   0.0   4.1e-39   1.2e-35       6      99 .]     345     439 ..     341     439 .. 0.98
   2 ?   -1.7   0.0       1.2   3.7e+03      50      82 ..    1119    1151 ..    1106    1154 .. 0.76

  Alignments for each domain:
  == domain 1  score: 121.7 bits;  conditional E-value: 4.1e-39
                   HHHHHHHHHHHHHHHHHHHHTT--B-HHHHHHHHHHHHHHHHHCT.S-HHHHHHHHCCSS-CCCB-TTCHHH-SEEEEEEEETTEEEEEEEES-S CS
  Urease_gamma   6 reldkLllfaaaelAqkrlarGlkLnhpEavaliasevlelardg.ksvaelmelgkklLtredvldgvaelleevqveatfpdgtkLvtvhdpi 99 
                   r +dkL++++++ lAq+rlarG+kLnh+Ea+alias+++el+rdg ++va+lm++gk++L+r++vl++v ++l+e+qve+tfp gt Lvtvh+p+
    KKY22792.1 345 RSIDKLAISQLGFLAQRRLARGVKLNHAEATALIASNLQELIRDGnHTVADLMSIGKTMLGRRHVLPSVISTLTELQVEGTFPTGTYLVTVHHPV 439
                   678******************************************999**********************************************7 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.2
                    TS-HHHHHHHHCCSS-CCCB-TTCHHH-SEEEE CS
  Urease_gamma   50 gksvaelmelgkklLtredvldgvaelleevqv 82  
                     + v+++ ++gk  ++ +dv+++++   e+ +v
    KKY22792.1 1119 VEAVKNCRKIGKLDMKYNDVMPKMKVDPESYRV 1151
                    3779999999*999*******998765555555 PP

>> SAD_SRA  SAD/SRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   0.0   2.5e-27   7.4e-24       9     134 ..     211     337 ..     205     343 .. 0.82

  Alignments for each domain:
  == domain 1  score: 84.2 bits;  conditional E-value: 2.5e-27
                 -TT-EESSHHHHHHTTSS--SS-SEEEE-GGGEEEEEE-S....-STT-EEETTEEEEE-SSSBTT--B........-S---SSTHHHHHHHHHHHT-- CS
     SAD_SRA   9 evGdtfksraelleagvHrplqagIsgskeegAvSivlsg....gYeddedegdeliYtGsggrkkkkkkk....eqsedqklergnlaLaksletkkp 99 
                   G+++++r+ ++++g+Hr++ agI+g+k+ gA +ivl +    +Y+d +d+g+e++Y+G+  r+  ++ +    ++ +  +++  ++ L +s+ t+++
  KKY22792.1 211 VNGQVWPNRICMVRDGAHRHQEAGICGNKDGGAQAIVLGQpwieEYAD-TDCGNEIWYVGTAARE--REPAfgdgDNEARTHVTAATELLFTSIITQND 306
                 569***********************************5444437877.9**********99883..22224565666667778999************ PP

                 EEEEEEEE----EE...........EEEEEEEEEEE CS
     SAD_SRA 100 VRVirgskekkkkkkkkskyaPe.gyrYdGlYkvek 134
                 VRV+r++     k  k ++y P  g+rYdG Ykv++
  KKY22792.1 307 VRVFRSA-----KLPKINSYRPPeGFRYDGTYKVTD 337
                 *****66.....444456799966**********87 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1     9e-05      0.27       2      29 ..     728     755 ..     727     789 .. 0.81
   2 !   25.5   0.0   2.8e-09   8.3e-06     243     457 ..     810    1058 ..     793    1066 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9e-05
  Amidohydro_3   2 viDakGrlvlPGFvDsHtHlagggvnlr 29 
                   vi  +G++v++G+ DsH+H +  ++++ 
    KKY22792.1 728 VIAGEGMIVTAGGFDSHIHFICPQQAYE 755
                   78889**************876665544 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 2.8e-09
  Amidohydro_3  243 gsrtalltepyf..tgwpdfe.....dealaelvaaadergldvaihaigdaavd...dvldafeaa....aekngnqdrr......rlehaegv 317 
                    + + al  + ++  +g + +e      +a+  +++ +de++++  ih+++        ++++a+  +     + +g  + +       +eh  ++
    KKY22792.1  810 SDPRALQEQAVAgvCGLKLHEdwgttPAAIDTCLSVCDEHDIQTLIHTDTLNESGfveQTIKAIKGRaihtYHTEGAGGGHapdiisVVEHPNVL 904 
                    55555555555566555555533322345888899999999999999887666555568888888887777555555555567788888888888 PP

  Amidohydro_3  318 ..tesqiervaalqvaagvqpvfnf.........edelldsrlgperargstpvkellnagvkvalgsD..apvgpfdpwprigaavmrktrrgg 399 
                      ++++ ++  +  ++  + + +++         +  +++sr+   ra+++++   l + g   +++sD  a + +   + r +++  ++++  g
    KKY22792.1  905 psSTNPTRPYTRNTLDEHLDMLMVChhlsknipeDIAFAESRI---RAETIAAEDVLHDLGAISMMSSDsqAMGRCGEVILRTWHTAHKNKVQRG 996 
                    9999999999999999999999998888888885445556666...8888899999999999999999955555555555666655555555555 PP

  Amidohydro_3  400 ....evlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvldadpldvdppel 457 
                        +  +    + +   +  yT +pA + g+++  G++evG+ ADlv+++ + +  +p+++
    KKY22792.1  997 qlpeDEGTGADNFRVKRYISKYTINPAITQGMSHVIGSVEVGKLADLVLWSPANFGTKPKTV 1058
                    88885555555899*************************************77666666543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.48
# Mc/sec: 7360.00
//
Query:       KKY22793.1  [L=535]
Description: putative serine threonine protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-58  196.6   0.0      6e-58  196.3   0.0    1.1  1  Pkinase         Protein kinase domain
    9.7e-26   90.6   0.0    1.4e-25   90.0   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
      7e-10   38.7   0.0    9.4e-10   38.3   0.0    1.2  1  Kinase-like     Kinase-like
     0.0096   15.3   0.0      0.021   14.2   0.0    1.5  2  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.085   11.6   0.0       0.14   10.9   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.3   0.0   1.7e-61     6e-58       4     264 .]      21     294 ..      18     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 196.3 bits;  conditional E-value: 1.7e-61
                 EEEEEEESSEEEEEEEETTTTE.EEEEEEEECHCHCHHHH...HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--H CS
     Pkinase   4 leklGeGsfGkVykaveketgk.ivAvKkikkekakkkke...kkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslse 97 
                  +++G+G+++++ k+   +t+   +AvK i ke a+   +   k++ +Ei+++k++  h++i+++y + e++ + ++ +e++egg+l+d +e++  +s+
  KKY22793.1  21 SKTIGSGAYACIKKGAPLNTHSpVFAVKFIHKEYAQRYGKikkKQIDMEISLHKHIGvHNHIIEFYLSGEDDIWTWIAMELAEGGDLFDKIEADAGVSQ 119
                 689***********99888766278*******98776554555******************************************************** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHH......TTSCB.SHHHHHHHHHHH CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk...ltsfvgtseYlAPEvl......keney.skkvDvWslGvi 186
                 + a  +++q++++++++Hskg+ HrD+KpeN+L++ +g+lK++DFG+a+ +e + k    t+ +g++ Y+APEvl      k+++y   ++D+Ws+Gv+
  KKY22793.1 120 DIAHVYFTQLISAVAFMHSKGVGHRDIKPENVLLSADGDLKLADFGMATLFEYHGKkklNTTLCGSPPYIAPEVLncssasKGHGYmADAADIWSCGVV 218
                 ***************************************************999988999***************99998867888799********** PP

                 HHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 187 lyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 l+ ll+g++p+    +  + +   ++   +  + +  + + + ++ ++ e+++ll+ ++++dp+ R+t e++ +hp++
  KKY22793.1 219 LFVLLAGNTPWDRPVEGVDGYGRPNE--YSEYLATGGRPDDELWQALPTEVLSLLRGMMNVDPSARFTLENVRRHPWF 294
                 ************55555444444444..3333334667899************************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0     4e-29   1.4e-25       4     256 ..      21     289 ..      19     291 .. 0.87

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 4e-29
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST....TSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTC CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlke....eateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkke 96 
                  +k++G+Ga++ + +g      ++++   avK +++    ++ + +k+++  e+++ k++  h++i++++    ++  ++i +e+++gGdL + ++++ 
   KKY22793.1  21 SKTIGSGAYACIKKGAPL---NTHSPVFAVKFIHKeyaqRYGKIKKKQIDMEISLHKHIgVHNHIIEFYLSGEDDIWTWIAMELAEGGDLFDKIEAD- 114
                  689************998...455555678887651111444556899999******************99999999******************98. PP

                  TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.......EEHHHH CS
  Pkinase_Tyr  97 kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.......ftsksD 187
                   + ++ +    + +q+ +++++++sk + Hrd+   NvLls +   k++DfG+a   e + + + +++   +  ++apE+l+ ++       +  ++D
   KKY22793.1 115 -AGVSQDIAHVYFTQLISAVAFMHSKGVGHRDIKPENVLLSADGDLKLADFGMATLFEYHGKKKLNTTLCGSPPYIAPEVLNCSSaskghgyMADAAD 211
                  .8888888888999*******************************************88888888888888999*******998888899988999** PP

                  HHHHHHHHHHHHTTSSGT.......TTTS.HHHHHHHHHHTTEES-BB..TTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 188 vWsfGvllwEiftlgesp.......ypgl.kneevleklkegkrlekp..ekcpeelyelmkkcweedpeeRptfselv 256
                  +Ws Gv+l+ ++  g++p       + g+ +++e  e+l +g r +    +  p+e+ +l++  ++ dp+ R t+++++
   KKY22793.1 212 IWSCGVVLFVLLA-GNTPwdrpvegVDGYgRPNEYSEYLATGGRPDDElwQALPTEVLSLLRGMMNVDPSARFTLENVR 289
                  *********9998.9999888877766677788999999999998765337899*******************999886 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   2.6e-13   9.4e-10     128     287 ..     105     281 ..      57     282 .. 0.78

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 2.6e-13
  Kinase-like 128 nkvlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggft..aLvragtkvvlseve...kgfaPpEllgsrggyt 220
                  +++ +k +  +   ++ia+ + T qli  +a +++kg+ h +++++n+ll  +g l+l +f+   L+ +  k +l+++      +  pE+l+      
   KKY22793.1 105 GDLFDKIEADAGVSQDIAHVYFT-QLISAVAFMHSKGVGHRDIKPENVLLSADGDLKLADFGmaTLFEYHGKKKLNTTLcgsPPYIAPEVLNCSSA-- 199
                  55566666667778899999996.7**********************************9963379999999999888834444555999988666.. PP

  Kinase-like 221 rknktkmthkldaWqlGlviyriwclklPltlateeakeew...............kfklckkipekvkaLlkkfLqlsqed 287
                   k +  m+ + d W  G+v + + + + P + + e++                   + +l +  p +v  Ll+++++++  +
   KKY22793.1 200 SKGHGYMADAADIWSCGVVLFVLLAGNTPWDRPVEGVDGYGrpneyseylatggrpDDELWQALPTEVLSLLRGMMNVDPSA 281
                  678999**************************99988754366666888888888877888888888888888888877655 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   5.9e-06     0.021     103     164 ..     105     162 ..      95     173 .. 0.78
   2 ?   -3.6   0.0       1.7     6e+03      98     113 ..     426     441 ..     425     457 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.9e-06
         Kdo 103 qdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwli 164
                  dL d ++  a +++   +  + ++  ++a +h+ gv H+d+ + n+ll +++     + l 
  KKY22793.1 105 GDLFDKIEADAGVSQDIAHVYFTQLISAVAFMHSKGVGHRDIKPENVLLSADG----DLKLA 162
                 56666666544577777777888888999*********************998....44455 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.7
         Kdo  98 rlegaqdLedllakwa 113
                 ++ +aq+L++++ +w 
  KKY22793.1 426 DILPAQSLTKFYSTWT 441
                 677899****999986 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     4e-05      0.14     320     396 ..     134     208 ..     124     223 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4e-05
  Pkinase_fungal 320 rsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgee....HsyrhD 396
                       ++  +g+ HrDi  +N+l+      ++    L+D+ +a+  + + +++ + +  G ++++a evl+ ++    H y+ D
      KKY22793.1 134 AFMH-SKGVGHRDIKPENVLLS-----ADGDLKLADFGMATLFEYHGKKKLNTTLCGSPPYIAPEVLNCSSaskgHGYMAD 208
                     5556.88999************.....788899********999888888889***************5334557999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 3349.84
//
Query:       KKY22794.1  [L=182]
Description: putative ubiquitin conjugating enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-48  163.8   0.0    2.1e-48  163.5   0.0    1.1  1  UQ_con     Ubiquitin-conjugating enzyme
    0.00034   20.5   0.0    0.00051   19.9   0.0    1.4  1  UEV        UEV domain
     0.0014   18.3   0.0      0.002   17.8   0.0    1.2  1  Prok-E2_B  Prokaryotic E2 family B
     0.0016   18.7   0.0     0.0024   18.2   0.0    1.4  1  RWD        RWD domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.5   0.0   4.7e-52   2.1e-48       1     136 [.      39     173 ..      39     177 .. 0.98

  Alignments for each domain:
  == domain 1  score: 163.5 bits;  conditional E-value: 4.7e-52
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT--TTSHHHH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeekWspaltles 99 
                 rlq+el++l+ ++ +gisa ++ d nl  w+++i+gp+dtpY g +Fk++++fp +YP+ pP+v f+t+i+HPnvd sG++cldiLk++ Ws+al+++s
  KKY22794.1  39 RLQSELMTLMLSPTPGISAFPSADGNLLLWTATIEGPADTPYTGLTFKISFQFPANYPYAPPTVLFKTPIYHPNVDFSGRICLDILKDK-WSAALNVSS 136
                 89*************************************************************************************55.********* PP

                 HHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHH CS
      UQ_con 100 vllsiqsLlaepnpesplnkeaakllkkdreeykkkv 136
                 vlls+qsLl epn+ spln +aa+l+ kd++e+kk+v
  KKY22794.1 137 VLLSLQSLLGEPNNASPLNGQAAELWDKDMTEFKKHV 173
                 ***********************************98 PP

>> UEV  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.1e-07   0.00051      35     120 ..      72     153 ..      44     154 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.1e-07
                 EEEEEE-SSSTTS-EEEEEEE--TTTTTS--EEEE-GCC--TSGGGGGB-TTSBB--HHHHS.--TTT--HHHHHHHHHH...-----XX CS
         UEV  35 lkGtipvkykgatyniPiliwvlesyPveaPivyvkptksmvikknenvdaqGlvylpyLee.Wkreksnlvslvqelaq...afeeesP 120
                 ++G   + y g t  + i ++ + +yP+++P+v  k         + nvd +G++ l++L++ W+  + n++s++ +l++     ++ sP
  KKY22794.1  72 IEGPADTPYTGLT--FKISFQFPANYPYAPPTVLFKTPIY-----HPNVDFSGRICLDILKDkWSA-ALNVSSVLLSLQSllgEPNNASP 153
                 4555556666554..5578999**********99876544.....569************852766.66655555555442226666666 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.5e-07     0.002      34     126 ..      81     163 ..      53     171 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.5e-07
   Prok-E2_B  34 sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLClleeeldldewdpngsvadvleqlqqvLn.egisgdedaefagEfqsYwe 126
                  g t+++ + +p ++p++pp v  + p      p + + +g +Cl       d+w ++ +v  vl +lq +L   + ++       g ++++w+
  KKY22794.1  81 TGLTFKISFQFPANYPYAPPTVLFKTPI---YHPNVDF-SGRICL---DILKDKWSAALNVSSVLLSLQSLLGePNNASPL----NGQAAELWD 163
                 6889********************9999...3455555.8*****...999*********************864444443....355555555 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.3e-07    0.0024      49      79 ..      79     114 ..      15     168 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 5.3e-07
                 TT-CEEEEEEEEE-SSTTSS--EEEEEECC.....S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....x RF
         RWD  49 ekkkpslkleiklpeeYPeeaPiislsste.....n 79 
                   +  ++k+ +++p +YP+ +P + ++++      +
  KKY22794.1  79 PYTGLTFKISFQFPANYPYAPPTVLFKTPIyhpnvD 114
                 5567899*******************9998444331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.48
# Mc/sec: 1145.05
//
Query:       KKY22795.1  [L=647]
Description: putative h+ nucleoside cotransporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-74  248.4   3.1    5.8e-74  248.4   3.1    2.4  3  Nucleos_tra2_C  Na+ dependent nucleoside transporter C-termin
    4.4e-25   88.1   1.8    2.5e-24   85.6   1.8    2.4  1  Nucleos_tra2_N  Na+ dependent nucleoside transporter N-termin
  ------ inclusion threshold ------
          1    7.5   3.3        1.3    7.2   3.3    1.1  1  Spc7_N          N-terminus of kinetochore NMS complex subunit


Domain annotation for each model (and alignments):
>> Nucleos_tra2_C  Na+ dependent nucleoside transporter C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.97   5.8e+03     184     197 ..     209     222 ..     193     227 .. 0.58
   2 ?   -0.8   0.1       0.2   1.2e+03     150     162 ..     394     406 ..     387     415 .. 0.83
   3 !  248.4   3.1   9.7e-78   5.8e-74       2     207 .]     423     637 ..     422     637 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.97
                     HHHHHHHHHHHHHH CS
  Nucleos_tra2_C 184 klglkallaGtlas 197
                      + + a+++G++as
      KKY22795.1 209 AVTIAAMIVGSFAS 222
                     34444555555554 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.2
                     HHHHHH-S--STH CS
  Nucleos_tra2_C 150 iatyaLcgFanfs 162
                     i  +++cgFa +s
      KKY22795.1 394 IHQIMCCGFATIS 406
                     77899*****998 PP

  == domain 3  score: 248.4 bits;  conditional E-value: 9.7e-78
                     HHHHHHHHHHHHHHHHHHHS---S-..............---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....T-TT- CS
  Nucleos_tra2_C   2 llaAsvmsapaalaiskllvPeteesktkk....keekeeekanvleaaaegaldglklalniaamliafvalvalinallgwlgs....gleel 88 
                     ++++++ms+pa+laiskl +Petee+ t++     +++e+++an+l+a+a+ga+ g+k+a +i+a l++++al+alinall+w+g+    + +el
      KKY22795.1 423 MVSSCIMSIPASLAISKLRYPETEETLTAGrvviPDDDEHRAANALHAFANGAWLGIKIAGMIIASLLCIIALIALINALLTWWGRylniNDPEL 517
                     689**********************999999999888888999*****************************************997766699** PP

                     -HHHHHHHHHHHHHHHTT--.GGGHHHHHHHHHHHHHT-HHHHHHHHGGGGSSS---HHHHHHHHHHH-S--STHHHHHHHHHHHHH-GGGHHHH CS
  Nucleos_tra2_C  89 slelilgyvfaplafllGvp.wedalkvgsllGtKlvlnefvayqeLsklkkkgelserseliatyaLcgFanfssigiqiGglgalaperrkdi 182
                     +lel+lgy+f+p+afllGvp   d++kv++l+G+K+++ne+va+++L++l ++++ls+rs+liatyaLcgF+n++s+giqiG l +lap r  d+
      KKY22795.1 518 TLELLLGYIFYPVAFLLGVPrNGDLYKVAQLIGIKVIANEYVAFSDLTTLDTYADLSARSRLIATYALCGFGNIGSLGIQIGILAQLAPGRAGDV 612
                     *******************6369************************************************************************ PP

                     HHHHHHHHHHHHHHHHHHHHHHHHT CS
  Nucleos_tra2_C 183 aklglkallaGtlasllsAaiaGll 207
                     ++++++al++G+la+l+sA++aGl+
      KKY22795.1 613 SRVAMSALFSGVLATLTSASVAGLV 637
                     ***********************85 PP

>> Nucleos_tra2_N  Na+ dependent nucleoside transporter N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   1.8   4.2e-28   2.5e-24       1      71 [.     238     308 ..     238     310 .. 0.98

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 4.2e-28
                     HHHHHHHHHHHHT-S-GGG--HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Nucleos_tra2_N   1 lGllvllliawllSenrkainwrtVigglllQfvlAlfvlktpagrdvfkalsdlvqalldfakaGasFvF 71 
                     +Gl v+++++w++S nrkainw++Vi+g+l Qf++Alfvl+t++g+d+f+++s+ +++ll+fa +G++F+ 
      KKY22795.1 238 FGLGVIIAFLWITSANRKAINWHPVIAGMLCQFIIALFVLRTEVGYDIFSFISNRASDLLGFAGEGTAFLT 308
                     69*******************************************************************96 PP

>> Spc7_N  N-terminus of kinetochore NMS complex subunit Spc7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   3.3   0.00022       1.3     229     339 ..       5     110 ..       1     125 [. 0.71

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00022
      Spc7_N 229 eseppsspeeqaeedea.esPaenqdlqqkkkrrrsstlaealsdadadealsSspfsgdsadgseeteleeeaeedddsnsdssddddestamsldem 326
                  s pps+pe + e+++a  +Pa ++++q+++++ + s+ aea   +d+    + + f++      +  + + + +++d    d+++ + e+ +m++d++
  KKY22795.1   5 VSTPPSAPEIKSEHATArDDPALQESHQHHHEHLHHSARAEAGR-HDDPAYTTGTTFESTQILSHSPLDHDPNGHHHD----DKNGLSTEKVGMTVDDA 98 
                 5689***********99899**9999999999999999888777.555666777888777665555555333333333....33367899999999998 PP

      Spc7_N 327 tsrsvasaqsdeS 339
                  +    s  sd+ 
  KKY22795.1  99 EKGG-NSIPSDAG 110
                 7654.77777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4557.05
//
Query:       KKY22796.1  [L=1051]
Description: putative copper-transporting atpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.9e-51  172.1   1.8    1.4e-49  168.1   0.2    2.7  2  E1-E2_ATPase  E1-E2 ATPase
    2.3e-35  122.8   0.2    5.1e-35  121.7   0.2    1.6  1  Hydrolase     haloacid dehalogenase-like hydrolase
    2.2e-20   72.8   0.0    6.8e-13   48.9   0.1    3.5  3  HMA           Heavy-metal-associated domain
    2.6e-06   27.4   2.8    0.00067   19.5   0.7    2.3  2  Hydrolase_3   haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.05   13.6   3.7       0.52   10.4   1.6    3.0  2  DUF1656       Protein of unknown function (DUF1656)


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.028     1e+02      39      64 ..      27      53 ..      26      87 .. 0.73
   2 !  168.1   0.2   3.9e-53   1.4e-49       6     180 ..     418     608 ..     403     609 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.028
                  SEEEEEEE-S.EEE-TTTS---S-EE- CS
  E1-E2_ATPase 39 aDgrivegsa.evdesaLTGEslpvek 64
                   D+++++ +    +es++TG+ ++   
    KKY22796.1 27 FDAEVISTNLpLSNESSITGDKTANAS 53
                  599*****************9987666 PP

  == domain 2  score: 168.1 bits;  conditional E-value: 3.9e-53
                   EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTSTTS- CS
  E1-E2_ATPase   6 takvirdgteeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkiarlve 102
                   +a ++++  ++ i+++ +++GDiv+l++gd+vpaDg+++ g++ vde+++TGE++ + k+kg+++++Gtv+ +g++ ++Vt+ g+dt+l++i++lv+
    KKY22796.1 418 AAARRQAAGQRFIPTELIQVGDIVILRPGDKVPADGVVIRGESYVDEAMVTGEAMHIFKKKGSSMIAGTVNQEGRVDFRVTRAGKDTQLSQIVNLVQ 514
                   333444455666************************************************************************************* PP

                   -------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT................HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase 103 eakskktplqkkldklgkvlvpvvlliallvflialllgksla................eallralallvaaiPcaLplavplalalgarrlak 180
                   ea+ +++p+q+ +d++++++vp++++++l++f  +++l + l                   l   ++++v a+PcaL+la+p+a+++g++  a+
    KKY22796.1 515 EAQTSRAPIQRLADRIAGIFVPTIIFLGLITFTGWMVLSHVLPnpphifvdehsggkfmVCLKLCISVIVFACPCALGLATPTAVMVGTGTGAE 608
                   *************************************888777788899999999998555555*************************98886 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.7   0.2   1.4e-38   5.1e-35       1     210 []     625     875 ..     625     875 .. 0.85

  Alignments for each domain:
  == domain 1  score: 121.7 bits;  conditional E-value: 1.4e-38
                 SSEEEEESBTTTBCHHHHHHH.....HHHHHCHHHHHHHHHH......HHCHHHHHHHHHHHHH.........HHHHHHHHHETTTE............ CS
                 xxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxx............ RF
   Hydrolase   1 iktvvfDkdGTLttgepsved.....vivsaalalaaaletg......sehpigkalvaaakar.........sgaltgfatfigrg............ 67 
                 i+ vv+Dk+GTLt g++ v +     v+ s+++  +    ++      sehpigka+ +aak +          g++ +f+   g+g            
  KKY22796.1 625 ITHVVLDKTGTLTLGKMTVAEanlqtVWSSNDWRKRLWWTLVglaensSEHPIGKAILKAAKTElrimdedsiDGSIGDFENTVGKGisvtvepnstae 723
                 5789************88888555557777777777777777899999*********99999999****99988888*****99999************ PP

                 ....HHHHTHHHHHHHH.............HCHHHHHHHHHHHHHHCHHHHHH.........TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEE CS
                 ....xxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  68 ....ayaigkpewltal.............dippdlgaaigsaqsqgrtvall.........qaralavftiadplkvkpeaaeavasLkaagievvll 140
                      +++g+  +l+                 p+  g++  s  +                 + ++ + ++++d+  +k  aa a+a+L+++gi + l+
  KKY22796.1 724 rtryNVLVGNSSFLAGKgihvpasmdpdakSSPDRNGSRSNSPVR-------SgvtcihvaiDSEYAGTLALSDQ--LKSTAAAAIAALHKMGIYTSLV 813
                 ***999999999999998877664454443344444444444444.......255556669999***********..********************** PP

                 ESSEHHHHHHHHHHTTGGGESEEEEHHCES...STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 141 tgdnpetaeraanqlGddyfdaviasdiet...vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 tgd  +ta  +a+ +G           i      a ++p +k+ +i eL+ ++e vamVGDgvnD++alaaA+
  KKY22796.1 814 TGDTFSTAINVAKLVG-----------IPReaiRASVLPHQKQDIIAELKSQGEVVAMVGDGVNDSPALAAAN 875
                 ****************...........555589**************************************97 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.04   1.4e+02      36      62 .]       2      28 ..       1      28 [. 0.90
   2 !   48.9   0.1   1.9e-16   6.8e-13       1      62 []      65     126 ..      65     126 .. 0.98
   3 !   17.0   0.0   1.7e-06     0.006       5      61 ..     151     207 ..     147     208 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.04
         HMA 36 ktvtVegdaestklrkiieaiekagyk 62
                ++++V +d+e ++  ki e ie+ g++
  KKY22796.1  2 GRAVVQHDPERLSADKIAEIIEDRGFD 28
                579*******************98875 PP

  == domain 2  score: 48.9 bits;  conditional E-value: 1.9e-16
         HMA   1 tvrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62 
                 tv++sgm+C++C ++ve ++++++g  s +++l + ++++++d+++++ ++i+eaie+ag++
  KKY22796.1  65 TVSISGMTCGACTSAVEGAFKGVDGLLSFTISLLAERAVIVHDTSKLSTEQIVEAIEDAGFD 126
                 799*******************************************999***********96 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 1.7e-06
         HMA   5 sgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagy 61 
                  g+ ++ +a + e++L e  gVes++++l t+++t+++++  + lr+++  ie++gy
  KKY22796.1 151 YGLPDGTSATTLESSLREKVGVESAVISLSTSRATIVYNPGLIGLRALVDFIESSGY 207
                 567788999999******************************************999 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1   0.00085       3.1       8      57 ..     785     833 ..     783     838 .. 0.83
   2 !   19.5   0.7   1.9e-07   0.00067     194     243 ..     846     895 ..     842     900 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00085
                  IIS-TTS---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSE CS
  Hydrolase_3   8 TLlnsdkkisektkeaikklkekgikvviATGRslravlpvleelgldlp 57 
                  TL  sd +++  +++ai+ l++ gi+  + TG  ++++++v++ +g+   
   KKY22796.1 785 TLALSD-QLKSTAAAAIAALHKMGIYTSLVTGDTFSTAINVAKLVGIPRE 833
                  554443.56788999****************************9998755 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1.9e-07
                  HHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE CS
  Hydrolase_3 194 klakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvt 243
                  +++ el+ + e v+ +GDg ND + L aa++g+A+ ++++ + +aAd v 
   KKY22796.1 846 DIIAELKSQGEVVAMVGDGVNDSPALAAANIGIALSSGTDVAMEAADIVL 895
                  677889999999***********************************986 PP

>> DUF1656  Protein of unknown function (DUF1656)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.09   3.2e+02       8      27 ..     268     287 ..     267     294 .. 0.90
   2 ?   10.4   1.6   0.00014      0.52       4      30 ..     530     556 ..     529     557 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.09
     DUF1656   8 yvPpllvlallAllltlllr 27 
                 ++P+l++  l++l+lt ++ 
  KKY22796.1 268 LIPGLFLGDLICLVLTSPVQ 287
                 69**************9986 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00014
     DUF1656   4 lgGvyvPpllvlallAllltlllrrll 30 
                 ++G++vP++ +l l+ +  +++l ++l
  KKY22796.1 530 IAGIFVPTIIFLGLITFTGWMVLSHVL 556
                 89*********************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1051 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      596  (0.0332422); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.51
# Mc/sec: 6209.28
//
Query:       KKY22797.1  [L=521]
Description: putative family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-50  169.1   0.1    2.2e-48  164.7   0.1    2.2  1  DUF155    Uncharacterised ACR, YagE family COG1723


Domain annotation for each model (and alignments):
>> DUF155  Uncharacterised ACR, YagE family COG1723
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.7   0.1   1.2e-52   2.2e-48       1     176 []     243     449 ..     243     449 .. 0.95

  Alignments for each domain:
  == domain 1  score: 164.7 bits;  conditional E-value: 1.2e-52
      DUF155   1 vfiFknGsvVfwgldeeeeknflnkllkflnees............elpreeeqeteeleyvydeqsessrikgdvivlkskslleklaiShalaqSvk 87 
                 +fiF++G+vV+w+++e++ek++l++l+   +                + +ee  etee+++ y+++ +++ri++d+i+l+s +++ k aiSha+aqS+k
  KKY22797.1 243 MFIFRYGVVVLWNFSERQEKDILADLTFSSTLDPkthltsplalavGPLPEEDFETEEFHFEYNNEISRPRIYNDMITLRSGDHMIKVAISHAIAQSTK 341
                 6**************************8866666899999999988777777777******************************************** PP

      DUF155  88 LdvlEesldellestekipkelakkgklklsrkellkktgellslrinlnl..................kselldtPdffW.eepeleslyeavseyle 167
                 L+++Ees+ + +++ +++p++la +g+l ++r++++k +g l+++r ++nl                   s++ld+Pdf+W +ep+l++ly av+eyle
  KKY22797.1 342 LSFFEESMATQMDNAKDVPRRLALTGELGMNRQQVVKIMGGLFKSRVDVNLcklslfsriqisllmiflASNMLDVPDFLWnDEPTLHPLYIAVREYLE 440
                 *********************************************************************************555*************** PP

      DUF155 168 ikeRikiLn 176
                 ik+Ri++Ln
  KKY22797.1 441 IKPRIQVLN 449
                 ********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 3510.21
//
Query:       KKY22798.1  [L=323]
Description: putative cop9 signalosome subunit 7 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2221.85
//
Query:       KKY22799.1  [L=288]
Description: putative rgs domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-11   42.0   0.0      2e-10   41.0   0.0    1.5  1  RGS       Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   1.1e-14     2e-10      43     112 ..      96     166 ..      84     171 .. 0.94

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 1.1e-14
                 HHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCSS.STTTTTTHHHHHHHHHHHHHHHHHHHHTS CS
         RGS  43 qeelkkkakeIyneylapsspkelnidkklreelekrleke.qpsrklfeeaqeevfellekdsypkFlks 112
                 ++++ + a++I+ ++l p+s++e+ +++++ e+++ ++e+e + ++++f++a+e+vf+ +e+d+yp Fl+ 
  KKY22799.1  96 RDDIRASAEKILYTFLLPGSEREIVLPQHMLESIRYNIEEEgRDDPEVFDNAKEYVFQAMERDAYPGFLQA 166
                 6789999*********************************9999************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1942.64
//
Query:       KKY22800.1  [L=413]
Description: putative histone acetyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-25   87.7   0.4    1.1e-24   86.3   0.4    1.8  1  Bromodomain      Bromodomain
    7.6e-09   35.8   0.0    1.5e-08   34.9   0.0    1.5  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    2.4e-06   27.5   0.0    4.2e-06   26.7   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    0.00028   21.3   0.1     0.0005   20.4   0.1    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.4   2.5e-28   1.1e-24       3      84 .]     312     393 ..     310     393 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 2.5e-28
                  HHHHHBHTTTCGGGGCSTT-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHHHH CS
  Bromodomain   3 kilsellehklaepFlepvdpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviyelaek 84 
                  ++l+++ +h +a pF +pv+++e+pdyy+vik+P+dLst++++l +  Y ++++f  d+kl+f+N+r+yn+e+++++++a+k
   KKY22800.1 312 HLLNDMQNHTSAWPFAQPVNRDEVPDYYEVIKEPMDLSTMEERLSKDLYPTPQEFIRDAKLVFDNCRRYNNETTPYAKSANK 393
                  68999**************************************************************************985 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   3.4e-12   1.5e-08      38     117 .]     127     202 ..      97     202 .. 0.83

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 3.4e-12
                     EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEE.EEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  38 aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikki.vlaveedndaairlYeklGF 117
                     +++  e++G i++++ p   ++ a+i ++a+s++ + kG+G +L+ +l ++++    +  + +l + +dn  ai++++k GF
      KKY22800.1 127 IKHPLEVVGGITYRPFPG--RKFAEIVFCAISSDQQVKGYGAHLMAHLKDYVKATsDV--MhFL-TYADN-YAIGYFKKQGF 202
                     4455579****9999999..9**********************************666..5356.66777.******88**9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   9.4e-10   4.2e-06      41     108 ..     132     204 ..     100     214 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 9.4e-10
  Acetyltransf_10  41 kivGvielrdgs.....hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnaspyavpfYeklGFka 108
                      ++vG i++r        +i  ++++++++ +G+g+ L+ ++++++ k+ + + ++   a++ya+++++k+GF++
       KKY22800.1 132 EVVGGITYRPFPgrkfaEIVFCAISSDQQVKGYGAHLMAHLKDYV-KATSDVmHFLTYADNYAIGYFKKQGFTK 204
                      5666665544334556689999**********************9.6667778*******************86 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   1.1e-07    0.0005      13      75 ..     132     203 ..     115     204 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.1e-07
                     EEEEEEEEEEES....TCTEEEEE-GGGTTSSHHHHHHHH....TTSEEE.....EE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7  13 kivGfialslld....aeitrlaVdpeyrgkGiGraLlea....aekgii.....le.qlelnaekaikfYeklGFe 75 
                     ++vG i + +      aei + a++ + + kG+G  L+++    +    +     ++  ++ ++ +ai++++k GF+
      KKY22800.1 132 EVVGGITYRPFPgrkfAEIVFCAISSDQQVKGYGAHLMAHlkdyV----KatsdvMHfLTYADN-YAIGYFKKQGFT 203
                     67888888888788878888899****************844331....122332343334444.9**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2865.76
//
Query:       KKY22801.1  [L=344]
Description: putative dna repair protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-67  227.7   0.0    1.6e-67  227.5   0.0    1.0  1  Rad1      Repair protein Rad1/Rec1/Rad17


Domain annotation for each model (and alignments):
>> Rad1  Repair protein Rad1/Rec1/Rad17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.5   0.0   8.8e-72   1.6e-67      15     275 .]       4     287 ..       1     287 [. 0.92

  Alignments for each domain:
  == domain 1  score: 227.5 bits;  conditional E-value: 8.8e-72
        Rad1  15 lLksiafkdkalvqissdGlkfivednrvlqaqafldkalFtsYtfenaqdd...edeedeeedsvsfevsLsallecLnifgkndssskessssrask 110
                 lL++ia+++ka vqi+s++++f ve++rv q+ a ldk+ F+sY f++++d+   ++  ++  + + f++sL alle+L+ifg ++++s+ s  +r++ 
  KKY22801.1   4 LLRCIALSTKADVQITSEAIRFLVEETRVSQGIADLDKDWFSSYIFNPPTDNengDNLASQPSSLPPFQISLMALLETLQIFGVSEPTSTFS--NRNQY 100
                 8*************************************************9966555567788899*********************88633..44334 PP

        Rad1 111 v.......asssakatscklsYkgeGsPLvliLeeagvtttcelsTyepe...edldleldrqevvlkvilkselLhsalteLdat.skklkilassek 198
                 +       ++++ +  +c+l Y++ GsPL+++L+ea++ ttce+ Tyep    ++  ++++r+++ lkvi+ + +L++a+teL++t +++l ++a+s+ 
  KKY22801.1 101 FsssnafnTPALGLGGTCRLAYTEIGSPLTITLSEADINTTCEIMTYEPAsetDQETIPFERENLNLKVIMPGFWLSEAMTELSSTnPDVLVLMATSS- 198
                 467999999999999**********************************98888888*****************************9****9999996. PP

        Rad1 199 kapvfalsak.gelgssevefpneks.........vlekfevs.sl.sessessYkfallkkaakalalssKvslrmdeaGlLslqfmi 275
                 +  v++l++  g  g s ve+  e +         v+e f+++    s+ ++++Y+f l+kkaa+a+al+sKvs+r d++G+Lslqfmi
  KKY22801.1 199 RMQVLSLQGLgGAYGDSMVEYRPEGKgnsssrspeVTEVFQINpPDsSGKVKQRYRFDLIKKAARAMALASKVSVRLDRQGVLSLQFMI 287
                 889*******99*********9999999***************94458999999**********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2462.07
//
Query:       KKY22802.1  [L=572]
Description: hypothetical protein UCRPC4_g03128 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-21   76.4   0.0    8.3e-21   75.3   0.0    1.6  1  Clr2      Transcription-silencing protein Clr2
  ------ inclusion threshold ------
        2.1    9.1   5.2          2    9.2   3.4    1.8  2  RBR       RNA binding Region


Domain annotation for each model (and alignments):
>> Clr2  Transcription-silencing protein Clr2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.0   9.2e-25   8.3e-21       1     146 []     201     330 ..     201     330 .. 0.93

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 9.2e-25
        Clr2   1 yyqGvylGaEriwvgDtVRlkpsesdnnlasklelssdasndkadvlvideIqvllktadee......dleeketirlaGkvytlvrkraykppssnaa 93 
                 +++G+ylG E+ +vgD++R++p+ ++              +++ d+lvi++I+++l+++  e      +l+ +++ir+ G +yt+  +r+y     +++
  KKY22802.1 201 FCKGIYLGPELYIVGDAIRIMPEDDH--------------QNCSDILVITSIRLRLHQISREtafesrKLADQTSIRIYGHAYTTTATRSYA----KDV 281
                 7*********************9888..............99*******************9****************************95....556 PP

        Clr2  94 ppakpkpleavvieelpkgfkavelrkygewyrvh.sgkevelsendvaGRfYe 146
                 p    +pl+a    el   f  v+++  g+wyr+h s+++ e+s ++++GR+Ye
  KKY22802.1 282 P--DGRPLNA---TELATLFPLVGMASLGNWYRLHdSNSRYEISFDRILGRLYE 330
                 6..3466777...77999***********************************7 PP

>> RBR  RNA binding Region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.4   0.00023         2      40      50 ..     442     452 ..     436     456 .. 0.94
   2 ?   -3.1   0.0       1.6   1.4e+04       8      25 ..     511     527 ..     505     542 .. 0.44

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00023
         RBR  40 KKRGpKPGsKr 50 
                 KKRG+KPGsK+
  KKY22802.1 442 KKRGRKPGSKL 452
                 9*********5 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.6
         RBR   8 g.RgrpPksttaplkgase 25 
                 + +g  P+s + +   +++
  KKY22802.1 511 VeKG--PASKSNTDDDVPM 527
                 4444..3333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 4474.71
//
Query:       KKY22803.1  [L=571]
Description: putative f-box domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-11   42.2   0.1    1.1e-10   41.2   0.1    1.6  1  F-box-like  F-box-like
    4.6e-08   32.7   0.4    9.9e-08   31.7   0.4    1.6  1  F-box       F-box domain
     0.0053   16.6   0.5      0.017   15.0   0.1    2.1  2  F-box_4     F-box


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.1   1.9e-14   1.1e-10       2      46 ..       2      45 ..       1      47 [. 0.95

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 1.9e-14
  F-box-like  2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlv 46
                ++LP EiLl+IF+ L+++dL++l  V++r  +va+ + l+Wr  +
  KKY22803.1  2 DNLPVEILLEIFESLSQKDLVSLQTVSKRLSSVARAN-LFWRDFC 45
                79********************************999.****988 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.4   1.7e-11   9.9e-08       4      47 ..       2      45 ..       1      46 [. 0.96

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.7e-11
                HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH CS
       F-box  4 srLPsevlrhILerLplsdllalrrVSkgwrilidsdrlwcksi 47
                ++LP e+l++I+e+L+ +dl++l  VSk++ ++ +   +w+ ++
  KKY22803.1  2 DNLPVEILLEIFESLSQKDLVSLQTVSKRLSSVARANLFWRDFC 45
                69***************************************998 PP

>> F-box_4  F-box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   2.9e-06     0.017       5      44 ..       1      40 [.       1      50 [. 0.92
   2 ?   -2.0   0.1      0.55   3.3e+03      52      73 ..     431     452 ..     429     461 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.9e-06
     F-box_4  5 LssLPlevlqhiaslLDsfsLsqLslvskllrevcssllq 44
                +++LP+e+l +i + L +  L++L  vsk+l  v++  l 
  KKY22803.1  1 MDNLPVEILLEIFESLSQKDLVSLQTVSKRLSSVARANLF 40
                689*******************************998875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.55
     F-box_4  52 kWekkkyskgksswkikkkvwe 73 
                 kW  +  s+  +sw+i+++ ++
  KKY22803.1 431 KWVERDGSSLVRSWNINQFRFN 452
                 5666666666666776665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3904.71
//
Query:       KKY22804.1  [L=455]
Description: putative rna polymerase i subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-30  104.9   0.0    4.3e-30  104.9   0.0    3.1  3  RPA43_OB     RPA43 OB domain in RNA Pol I
  ------ inclusion threshold ------
      0.022   15.1   0.0      0.046   14.1   0.0    1.6  1  SHS2_Rpb7-N  SHS2 domain found in N terminus of Rpb7p/Rpc25p/


Domain annotation for each model (and alignments):
>> RPA43_OB  RPA43 OB domain in RNA Pol I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.9  10.4         2   1.8e+04      54      77 ..      26      48 ..       8     108 .. 0.55
   2 !  104.9   0.0   4.8e-34   4.3e-30       1     124 []     237     381 ..     237     381 .. 0.76
   3 ?   -1.8   0.8      0.52   4.6e+03      41      65 ..     396     420 ..     384     436 .. 0.49

  Alignments for each domain:
  == domain 1  score: -6.9 bits;  conditional E-value: 2
                ------------------------ CS
    RPA43_OB 54 kaeeeeeeeeeeadaekeeeeele 77
                +a++e +++++ +++++++ee+++
  KKY22804.1 26 HADDERSKSSK-KKRKHTSEEPAQ 48
                22111111111.111111111111 PP

  == domain 2  score: 104.9 bits;  conditional E-value: 4.8e-34
                 --TTEEEEEEEEEEESSEEEEEETTTEEEEEECTTS-TTSEEE........CSS------..............------------------------- CS
    RPA43_OB   1 PqrgqkLeGwvnlqseghiglvvlnlFnvsIerkrlpadWkwvpae.....kkkekgkka..............eeeeeeeeeeadaekeeeeelekae 80 
                 P+ g++LeG+vn++s+gh+gl+ +n+F+vs++ +r+p++W+w+++e     k   k k++              + +++++++++++            
  KKY22804.1 237 PNPGDVLEGYVNVASRGHVGLMSYNVFQVSVHPNRIPKSWEWIEPEgvsekK---KPKTTklrdedsspaqsedTPADSDADQAFET-----------A 321
                 999****************************************555575431...22222355444333332222223333333333...........1 PP

                 ..............EEEEEEE-T.TSSB--SEEEEEEEEEE-......SSSS-EEEEES- CS
    RPA43_OB  81 ..............eetGywvdsvsgekvegklkFrvvdvdv..gserdkgflsieGtll 124
                               eetGy++ + s+ekv g +k+rv+d+d+  g ++dk+ l+++Gtll
  KKY22804.1 322 pednipaenkaapiEETGYFIIKPSNEKVLGPIKYRVIDIDMvpGLSSDKWSLQLHGTLL 381
                 34446666677999********************************************97 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.52
                 EEE...CSS---------------- CS
    RPA43_OB  41 kwvpaekkkekgkkaeeeeeeeeee 65 
                 +w+ ae+++++g + ++++++++++
  KKY22804.1 396 RWERAERQRKEGPRLQQSSNDKHRT 420
                 3444443333333333333333333 PP

>> SHS2_Rpb7-N  SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   5.1e-06     0.046       3      70 .]     140     235 ..     138     235 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.1e-06
                  EEEE-GGGTTS.THHHHHHHHHHHHHTTBEETTT.EEEEEEEEEEEECC..........................EEE-TTTSSEEEEEEEEEEEE CS
  SHS2_Rpb7-N   3 tvrlePsylgs.tledallerllekyegkvvpsl.Gvivavldiaeyse..........................gkvlggsGsvyvrVtfralvF 70 
                   v+l+P +++  t + +l +++ ++++  + p l  vi++ +d  ++s+                           + +++ G+++ ++t+++l F
   KKY22804.1 140 LVPLPPIAISTsTALSSLVAQHISPLLLAYHPPLeSVILSFSDPVLSSKepsdvdvispeprtandpsdvkelplAHSRDEHGVSFIWLTVTFLLF 235
                  69********99********************************9988889999999999******************************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1696  (0.0945953); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.52
# Mc/sec: 2650.91
//
Query:       KKY22805.1  [L=587]
Description: putative glycoside hydrolase family 18 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-21   77.9   0.4    1.1e-21   77.9   0.4    2.3  3  Glyco_hydro_18  Glycosyl hydrolases family 18


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1      0.27   4.9e+03     105     137 ..     114     138 ..      76     193 .. 0.65
   2 ?   -2.9   0.0      0.24   4.3e+03     224     274 ..     157     212 ..     132     244 .. 0.55
   3 !   77.9   0.4   6.3e-26   1.1e-21       2     234 ..     272     532 ..     271     569 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.27
                     -SEEEEEES-TTTSTCHHHHHHHHHHHHHHHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 105 fDGiDidweypggnpedkenytallkelreald 137
                     +  iD+d e        +e  ++ l el +a+d
      KKY22805.1 114 YTTIDLDQE--------NEELQDGLDELNSAFD 138
                     555666666........2333333333333333 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.24
                     EEESEEEEEEESSSSSSTSTTTEEEHHHHHHHH..........TEEEEEEEEETTTTE.EEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxx.xxx RF
  Glyco_hydro_18 224 Gvpfygrawalvsgadntkeegvlsykelkell..........kkakakrkydskaka.pyv 274
                      vp+y+ + +       t + gv++++  ++ +          +++  +++ d+++ + +yv
      KKY22805.1 157 SVPTYATTTTP------TAAGGVVTVYSTSNYYltgtsseadfGSSLVDGTADPTQATtSYV 212
                     55555433332......334555665555555555556666664444444444444433444 PP

  == domain 3  score: 77.9 bits;  conditional E-value: 6.3e-26
                     EEEEEEGGGGGSS.G..C.SHTTTESEEEEEEEEEEE.................TTTEEEESSTTHH............HHHHHHHHHH.HHTST CS
                     xxxxxxxxxxxxx.x..x.xxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxx............xxxxxxxxxx.xxxxx RF
  Glyco_hydro_18   2 vvgYysswesygn.n..y.lpsaklthiiyaFakidg.................engkvvvsdwedl............gnfeqlkklk.kkknp 62 
                     v++Yy++ + +   +  +    + ++++++aF+  ++                 +           +            ++ e+++ +  + ++ 
      KKY22805.1 272 VAVYYGQSNITSSvRldTiCEDSSVDIVVLAFITEFDtgsgypalnlggsgcwaA-----------TtaqtsagatgliDCTENVSPQIeTCQSL 355
                     7899998888866553323559***********9999999998888887777751...........23333333344468888899888888999 PP

                     T-EEEEEEEETTTTTHHHHHHTSHHHHHHHHHHHHHHH.........HHCT...-SEEEEEES-TTTSTCHHHHHHHHHHHHHHHHHHHHHHTST CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18  63 gvkvllsiGGwtdssgfslaastdasrkkfadsvvsll.........rkyg...fDGiDidweypggnpedkenytallkelrealdkakategk 145
                     g+ vllsiGG++   ++     ++++  ++a+s+++l+         r++g   +DG+D+d e      +d +ny +++++lr+    +++++ k
      KKY22805.1 356 GKPVLLSIGGASS--SVTIP--SQTASLEYAASLWRLFgegtgnetiRPFGsvvLDGFDMDNES-----SDSSNYETFISALRT----YASNATK 437
                     **********998..44444..4577899*********9999999998888************3.....579************....889999* PP

                     TCEEEEEEESSHHHHHHHCHHHHHHHHTSEEEEETTTSSS..............TTSSBE--SS-SSBTCSSHHHHHHHHHHTT--GGGEEEEEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 146 kllLsaavpasasdlskgydlpkiakylDyvnvmtYDfhg..............swdnvtghhaplydaslnvdeavkeylkagvpakklvlGvp 226
                      ++Lsaa++++++d  ++ +l+ ++++lD+++v++Y+  +              +w++ ++  ++        ++   + + +gv++ +l++G p
      KKY22805.1 438 PMYLSAAPQCPRPD-ANI-PLASMQSSLDFIWVQFYNNPScglkagtafldsvtAWSDDINSTTAAA----DGESF--TKIDNGVSSPRLYIGAP 524
                     **************.345.9****************6666878777777777777777555555552....22222..23566899999****99 PP

                     SEEEEEEE CS
                     xxxxxxxx RF
  Glyco_hydro_18 227 fygrawal 234
                     ++  a + 
      KKY22805.1 525 AFYEAGKD 532
                     99655443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       825  (0.0460148); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.50
# Mc/sec: 3546.97
//
Query:       KKY22806.1  [L=753]
Description: putative trna-dihydrouridine synthase 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-41  140.2   0.0    8.2e-29  100.7   0.0    2.7  2  Dus        Dihydrouridine synthase (Dus)
    0.00037   20.5   8.0      0.047   13.8   0.9    2.8  2  zf_CCCH_4  Zinc finger domain
      0.001   18.8   2.3      0.001   18.8   2.3    3.0  3  zf-CCCH_4  CCCH-type zinc finger
     0.0036   17.2   6.4      0.014   15.3   1.8    2.7  2  zf-CCCH    Zinc finger C-x8-C-x5-C-x3-H type (and similar)
  ------ inclusion threshold ------
       0.24   12.1  14.9      0.072   13.8   3.9    2.9  3  Torus      Torus domain


Domain annotation for each model (and alignments):
>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   0.0   2.3e-32   8.2e-29       2     177 ..     335     546 ..     334     560 .. 0.89
   2 !   36.5   0.0   8.1e-13   2.9e-09     186     249 ..     591     650 ..     581     676 .. 0.74

  Alignments for each domain:
  == domain 1  score: 100.7 bits;  conditional E-value: 2.3e-32
                 E---TTTS-HHHHHHHHHTT-SSEEEEEEEE-SSS---HHHHHHH-GGGGGT.....................SCEEEEEE-S-HHHHHHHHHHHHH.. CS
         Dus   2 laPmagvtdlpfRelvrefgataLvvtemvtakaivreekvrirmlseeeee.....................tplavQlggsdpallaeaAklvad.. 77 
                 laP+  + ++pfR+l+  +ga+  +++em  +  +++ +++++  l++ e+e                          Q+ +++p l+++a ++     
  KKY22806.1 335 LAPLTTQGNQPFRRLCSDLGAE-FTYSEMAMSLPLIQGQRSEWALLKAHESEvflpsftpsrpivadydqakdLRFGAQISANKPWLALKATEILTTll 432
                 8*********************.**********************************************997666677***************998755 PP

                 .TT-SCEEEEESSTTEEETTEEEGGGGGGSHHHHHHHHHHHHCCSS.S-EEEEEESESSTTTC.HHHHHHHH............HHCT-SEEEEESSEC CS
         Dus  78 .lgadeIdlNvGCPskkvtrggaGaaLlrkpdlvaqivkavvkave.iPvtvkirigiddeeenalelakiv............eaaGaqaltvHgRtr 162
                   g   IdlN+GCP++ v r+gaG+aL+ +p  ++++++ +    +  P+tvkir+g +d + +a +l++++              +G++a+t+HgR+r
  KKY22806.1 433 pGGLRCIDLNCGCPIDLVYREGAGSALMDHPSKLEKMLRGMNVVSGeTPITVKIRTGTRDGKPTANKLVERLifgghesqemniGPCGIAAITLHGRSR 531
                 589**************************************887767*********************9987444433222111369************ PP

                 CCTT-CG--CHHHHH CS
         Dus 163 aqnyegtadweaIke 177
                 +q+y++tadw+ I++
  KKY22806.1 532 QQRYTKTADWNYIAS 546
                 ***********9987 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 8.1e-13
                 EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHHHHHHHHHSC------HHHHHHHHHH CS
         Dus 186 viaNGdIkdaedaqaileetGadgvmigrgalgnPwlfaestavktgeaepapplaeeaeivee 249
                 +i+NGd+++  d  +++++ G+d vm++rgal +Pwlf+e t+++    +++    e+++ ve+
  KKY22806.1 591 FIGNGDCYSHIDYYDHVNNAGVDSVMVARGALCKPWLFEEITTNQY--LDKSA--SERLTYVEK 650
                 799***********************************96433322..22222..233333333 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.9   1.3e-05     0.047       9      19 .]     155     165 ..     154     165 .. 0.97
   2 !    9.7   1.1   0.00026      0.92       6      18 ..     192     204 ..     191     205 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.3e-05
   zf_CCCH_4   9 CkkGdkCrFaH 19 
                 C++GdkC+F H
  KKY22806.1 155 CPFGDKCKFEH 165
                 *********99 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00026
   zf_CCCH_4   6 qGtCkkGdkCrFa 18 
                 +G+C+ G kCrF 
  KKY22806.1 192 KGYCNVGWKCRFV 204
                 7***********5 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   2.3   2.8e-07     0.001      10      22 .]     154     166 ..     145     166 .. 0.79
   2 ?    3.2   1.0     0.023        83       3      19 ..     186     203 ..     185     204 .. 0.81
   3 ?   -3.1   0.1         2   7.3e+03      11      13 ..     681     683 ..     680     684 .. 0.52

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.8e-07
   zf-CCCH_4  10 sCrfGdnCrFsHd 22 
                  C fGd+C+F+Hd
  KKY22806.1 154 ECPFGDKCKFEHD 166
                 7***********9 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.023
   zf-CCCH_4   3 Cpyfa.kGsCrfGdnCrF 19 
                 Cp +  kG C  G +CrF
  KKY22806.1 186 CPVWDaKGYCNVGWKCRF 203
                 666655999********9 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2
   zf-CCCH_4  11 Crf 13 
                 Cr+
  KKY22806.1 681 CRY 683
                 544 PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.8   3.9e-06     0.014       9      26 ..     150     166 ..     142     167 .. 0.80
   2 ?    3.4   0.2     0.021        76       6      23 ..     186     203 ..     184     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.9e-06
                 HHHHS--TTGGG-SSBSC CS
     zf-CCCH   9 fmrtGyCkyGdrCkFaHg 26 
                 f+  ++C++Gd+CkF H+
  KKY22806.1 150 FAP-RECPFGDKCKFEHD 166
                 555.89*********996 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.021
                 BCHHHHHS--TTGGG-SS CS
     zf-CCCH   6 CrffmrtGyCkyGdrCkF 23 
                 C+ +   GyC+ G +C+F
  KKY22806.1 186 CPVWDAKGYCNVGWKCRF 203
                 7778888**********9 PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   3.9     2e-05     0.072      34     103 ..     106     178 ..      86     184 .. 0.66
   2 ?    6.0   0.6    0.0053        19      74      91 ..     188     205 ..     172     220 .. 0.75
   3 ?   -3.1   0.2       3.5   1.3e+04      22      37 ..     265     280 ..     254     313 .. 0.43

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2e-05
                 ---S-THHHHS-----S----HHHH----HHH..HSTT--B-HHHHHT--SSGGG-SSB-S---SS-.---TT CS
       Torus  34 wsgeekekkkkskekaktrcnikkdsGytkad..kekesyfClfFarGlCakGkkCeylHrlPteed.lkekk 103
                  +++ k++k+ +k+k +   n ++  G  k +    +++  C  Fa   C+ G kC++ H+l +  + +k+++
  KKY22806.1 106 DRTDGKDQKRGKKDKKSRGQNKARSFGSSKDEitLCQSRAHCAEFAPRECPFGDKCKFEHDLRKYLQdYKRDD 178
                 3322233333344444444567788899999843345669*********************987544255555 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0053
                 HHHHHT--SSGGG-SSB- CS
       Torus  74 lfFarGlCakGkkCeylH 91 
                 ++ a+G+C  G kC+++ 
  KKY22806.1 188 VWDAKGYCNVGWKCRFVG 205
                 4459***********974 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3.5
                 SS-----TTSS----S CS
       Torus  22 qegeeyNiWynkwsge 37 
                 ++ +  N W +  + e
  KKY22806.1 265 KKSDAMNNWIDVTQRE 280
                 4445555555533311 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.51
# Mc/sec: 4475.95
//
Query:       KKY22807.1  [L=369]
Description: putative transcription factor tfiia complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-63  216.4  18.0    1.9e-63  215.9  18.0    1.2  1  TFIIA     Transcription factor IIA, alpha/beta subunit
  ------ inclusion threshold ------
       0.97    7.6  15.6        1.3    7.2  15.6    1.1  1  PAT1      Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.9  18.0   2.1e-67   1.9e-63       1     403 [.       9     369 .]       9     369 .] 0.70

  Alignments for each domain:
  == domain 1  score: 215.9 bits;  conditional E-value: 2.1e-67
       TFIIA   1 vYrsvIedVIesvredFeeeGvdeqvLeeLkqlWesKllqskaaefpwdpkpeeaqspqfvlqlpqslkqalqasaaaasqapastsqslpslvipagk 99 
                 vY ++I+dV e++++dFee Gvd+++L+ L++    Kl++ ++a+fpwdp p +a++p +++  ++ +k++   ++a        t+  +p+       
  KKY22807.1   9 VYAKIIQDVLEASQVDFEEGGVDQSTLDKLRK---DKLSSIRVAQFPWDPTPPPATQPAQAQA-QAPVKPQP--PSA--------TA--TPTP------ 85 
                 8******************************7...8****************99777666443.33333333..222........11..1221...... PP

       TFIIA 100 svqsltanssaataatfslpakleppvqipagvtlqtasgqlykvnvqasgaqqiaaqplqqvvqqsqgsaaqssvaalqaqsqqaqalaepqqqlekq 198
                         + +++ a+ ++++k+e      +++  ++ s+ql   ++++  aqq+aa++lqq+     g++a+ ++++lq+qs  +q +  p++     
  KKY22807.1  86 --------TPPTAPANIEPQIKTES-SRAGSQTPSNYNSPQLPANSMANMTAQQRAAAALQQK----FGQQAAPQISQLQGQSTLQQRQGTPSSS---- 167
                 ........11223444444444444.111111222223335554555888999***9***999....8899999999**9983333333333333.... PP

       TFIIA 199 qqqqqqqqqqqqqqqvqqqqqeesqqaqqasqeqvagsqvessqtdgaedaleeespvlegelsaeeeagaqkeelsreeidri.re............ 284
                   +q+ q+++   +++qq qq     aqq        +++ ++qtdg+ dal++    ++ e++++++++a     +  e d++ +e            
  KKY22807.1 168 --YQNGQNVKPPLSTMQQMQQ-----AQQR-------PSLPNNQTDGSGDALQD----WKMEVARRRADAAA----HPGEGDSLlKEhflalqqrmegg 244
                 ..3444444444445554332.....3333.......377899***********....*********99885....556778887778999******** PP

       TFIIA 285 .......ealkakelekeskkkkr.aeessla...........dlseilqlDGagddsdeeeeeeesdedsdsessddedeqveEDplNSd.DDvdd.. 361
                        e+ + +  ++++ +++  +++ss +           + ++  q+DG +ddsd+   e + ++d+d            ED++NSd DD+d+  
  KKY22807.1 245 gllmpleERYQPRTSARRKVHAPIgESQSS-TtaaiagssvapKSHSLQQFDGVDDDSDD---EVKVKDDED------------EDAINSDlDDPDEia 327
                 **9998744444444444444333333322.246888888888999**************...455555555............*************86 PP

       TFIIA 362 .eddddlfdtdnvivCqYDKvhRsKNKWKftLKDGvmtvnGkd 403
                  + ++d  dt++ ++C+YDKv+R+KNKWK+tLKDG++ v+Gk+
  KKY22807.1 328 gDPEAD-ADTNEAMLCTYDKVQRVKNKWKCTLKDGILKVDGKE 369
                 666677.88888******************************8 PP

>> PAT1  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  15.6   0.00014       1.3     151     321 ..      40     211 ..      13     249 .. 0.50

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00014
        PAT1 151 pepipdlqvdaslWgvaekkaaasaaa.......pevaaaaaslasasrkvlsleEvEaamraqakkkaaqaaaaaaasqqPaaeqaeqaeaaaqaaka 242
                 ++ ++ ++v +  W+ ++  a+++a+a       p++ +a+a+   +     +   +E +++++++++ +q++++ +++q Pa++ a+ ++++   a+a
  KKY22807.1  40 KDKLSSIRVAQFPWDPTPPPATQPAQAqaqapvkPQPPSATAT--PTPTPPTAPANIEPQIKTESSRAGSQTPSNYNSPQLPANSMANMTAQQR--AAA 134
                 5666666666666765554444444442233222222111111..2223334556677777777777776666666666666644444333222..222 PP

        PAT1 243 eqaqqapesakeqqqeqeqaaqaqqkkeqgkpvtilqrpqskqakpaepsasseaqeakqqappakvqptqilqnpnrl 321
                 + +q++ ++a    q ++ + q++ +++qg+p +  q  q+ ++  ++ ++ ++aq+  + +++++  +   lq+ ++ 
  KKY22807.1 135 ALQQKFGQQA--APQISQLQGQSTLQQRQGTPSSSYQNGQNVKPPLSTMQQMQQAQQRPSLPNNQTDGSGDALQDWKME 211
                 2222222222..2222233333333345555555555555544444443333333333333333333344555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1091  (0.0608511); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.52
# Mc/sec: 2150.97
//
Query:       KKY22808.1  [L=614]
Description: putative cell division cycle protein cdc20 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.3e-17   61.3   5.2    1.5e-05   25.2   0.0    4.5  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    1.4e-16   60.5  14.2    0.00036   21.3   0.1    6.3  6  WD40         WD domain, G-beta repeat
      5e-06   25.7   0.1    0.00046   19.2   0.0    3.2  3  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
      6e-05   23.0   0.3     0.0099   15.8   0.1    2.5  2  eIF2A        Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   3.3e-09   1.5e-05      32      90 ..     327     392 ..     289     394 .. 0.87
   2 !   21.0   0.2   6.7e-08    0.0003      23      90 ..     411     476 ..     408     477 .. 0.90
   3 !   11.3   0.3   7.5e-05      0.34      33      91 ..     462     521 ..     456     522 .. 0.85
   4 !    6.7   0.0    0.0019       8.6      33      77 ..     550     594 ..     534     603 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 3.3e-09
  ANAPC4_WD40  32 l........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +         e++++  v+s++W+ dg    v+   gev++ d+e+g+ ++s+  +++ +v  +gW+
   KKY22808.1 327 AesgtvsclLETSPETYVSSVKWSGDGAYVSVGLGTGEVQIWDVEEGTKLRSMFGHET-RVGVMGWS 392
                  44444444467788999***********************************977777.7******8 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 6.7e-08
  ANAPC4_WD40  23 RlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  R+  ++v +l   ++ sev +L+W+ dg  La + +d+ v++ da s    + ++ ++  av+ l+W+
   KKY22808.1 411 RVAQHKVAEL--VSHTSEVCGLEWRSDGAQLATGGNDNLVSIWDARSLAAPKFSKKNHRAAVKALSWC 476
                  7777888888..7999******************************9998888888888899999996 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 7.5e-05
  ANAPC4_WD40  33 eedkedsevrsLaWkpdg.klLava..ysdgevrlldaesgkvvhslsvksekavtclgWge 91 
                  +++++   v++L+W p   +lLa +    d ++++ +  +g  v+s++++s+  vt+l+W++
   KKY22808.1 462 SKKNHRAAVKALSWCPWQlNLLATGggAYDKHIHFWNTTTGARVNSIDTGSQ--VTSLKWSN 521
                  56889999******99653888886225799*******************99..******86 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0019
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsls 77 
                  e ++++ +v + + +pdg++La a +d ++++ ++ + k   s s
   KKY22808.1 550 EIPAHETRVLHSCLSPDGQMLATAAADESLKFWKVFERKAGTSAS 594
                  55677888999999****************999988777666555 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.9   8.5e+03      19      38 .]     309     326 ..     306     326 .. 0.66
   2 !   11.1   0.2   0.00013       0.6      12      38 .]     343     369 ..     329     369 .. 0.85
   3 !   21.3   0.1     8e-08   0.00036       4      38 .]     417     452 ..     414     452 .. 0.90
   4 !   10.3   0.1   0.00024       1.1      10      38 .]     466     498 ..     459     498 .. 0.67
   5 !    9.0   0.3    0.0006       2.7      12      38 .]     513     541 ..     501     541 .. 0.80
   6 !   13.9   0.0   1.7e-05     0.076       8      38 .]     552     583 ..     545     583 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.9
                 ETTSSEEEEEETTSEEEEEE CS
        WD40  19 spdgawlasGsdDgtvriWd 38 
                 s+ ++  a G   ++v++W+
  KKY22808.1 309 SSGNQV-AIGL-ERNVYVWS 326
                 444444.5688.9999**95 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00013
                 SEEEEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40  12 svtslafspdgawlasG.sdDgtvriWd 38 
                  v+s+++s dga+++ G +  g v iWd
  KKY22808.1 343 YVSSVKWSGDGAYVSVGlG-TGEVQIWD 369
                 399***********99*88.*******9 PP

  == domain 3  score: 21.3 bits;  conditional E-value: 8e-08
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + +l  H s v++l + +dga la+G+ D+ v iWd
  KKY22808.1 417 VAELVSHtSEVCGLEWRSDGAQLATGGNDNLVSIWD 452
                 567889*777*************************9 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.00024
                 S.SSEEEEEEETTSSE.EEEEE..TTSEEEEEE CS
        WD40  10 H.ssvtslafspdgaw.lasGs..dDgtvriWd 38 
                 H   v +l+++p +   la+G+  +D+++++W+
  KKY22808.1 466 HrAAVKALSWCPWQLNlLATGGgaYDKHIHFWN 498
                 6555777744433333478985457*******8 PP

  == domain 5  score: 9.0 bits;  conditional E-value: 0.0006
                 SEEEEEEETTSSEEEEEET..TSEEEEEE CS
        WD40  12 svtslafspdgawlasGsd..DgtvriWd 38 
                  vtsl++s + + l+s s   D+++ iW+
  KKY22808.1 513 QVTSLKWSNHYRELVSTSGfpDNSLSIWS 541
                 5************99655446*******5 PP

  == domain 6  score: 13.9 bits;  conditional E-value: 1.7e-05
                 ESS.SSE..EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssv..tslafspdgawlasGsdDgtvriWd 38 
                  +H + v  ++l  spdg++la++  D ++++W+
  KKY22808.1 552 PAHeTRVlhSCL--SPDGQMLATAAADESLKFWK 583
                 578777854455..********9988*******6 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.07   3.1e+02     180     216 ..     334     370 ..     319     384 .. 0.83
   2 ?    1.3   0.0     0.031   1.4e+02     184     215 ..     421     452 ..     405     460 .. 0.79
   3 !   19.2   0.0     1e-07   0.00046     182     219 ..     549     587 ..     457     594 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.07
    Ge1_WD40 180 gllkieehsliveaafspdGtalatasedGevkffqv 216
                  ll+ + ++ +++  +s dG+ +++    Gev+ + v
  KKY22808.1 334 CLLETSPETYVSSVKWSGDGAYVSVGLGTGEVQIWDV 370
                 566677778899999******************9998 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.031
    Ge1_WD40 184 ieehsliveaafspdGtalatasedGevkffq 215
                 ++++s++    + +dG+ lat  +d +v  + 
  KKY22808.1 421 VSHTSEVCGLEWRSDGAQLATGGNDNLVSIWD 452
                 5667899999****************999885 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 1e-07
    Ge1_WD40 182 lkieeh.sliveaafspdGtalatasedGevkffqvyle 219
                 ++i  h + + ++ +spdG  lata++d  +kf++v+  
  KKY22808.1 549 VEIPAHeTRVLHSCLSPDGQMLATAAADESLKFWKVFER 587
                 4555552479**************************965 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0056        25     100     141 ..     341     379 ..     316     396 .. 0.71
   2 !   15.8   0.1   2.2e-06    0.0099      53     178 ..     417     542 ..     393     555 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0056
                 EES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEE CS
       eIF2A 100 eqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiaka 141
                 e +  ++++s  g +v + G+g   Ge++iwdv++ +k+ ++
  KKY22808.1 341 ETYVSSVKWSGDGAYVSV-GLG--TGEVQIWDVEEGTKLRSM 379
                 555667889999998865.677..589999999987777655 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.2e-06
                 ECCE.ESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECSCEEEEEEEEES-....-EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-.TT CS
       eIF2A  53 vvel.kkegpihdvaWspkskefaviyGkmpakvslfdlkvkviskleeqkr....NtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaea.an 145
                 v el +++ ++  ++W +++ ++a   G  ++ vs++d +  +  k++++++     ++ ++p +  +l  G g    ++ +w++++   +++++  ++
  KKY22808.1 417 VAELvSHTSEVCGLEWRSDGAQLA--TGGNDNLVSIWDARSLAAPKFSKKNHraavKALSWCPWQLNLLATGGGAYDKHIHFWNTTTGARVNSIDTgSQ 513
                 444413445589999999999876..799**********965555555544311126789***9999999999*************9999999976378 PP

                 --EEEE-TTSSEEEEEE-TTT-SSS-EEEEEET CS
       eIF2A 146 atlvewspdgryvlTattaprlrvdngfkiwsy 178
                  t+++ws++ r ++  + +p    dn++ iwsy
  KKY22808.1 514 VTSLKWSNHYRELVSTSGFP----DNSLSIWSY 542
                 999*******9999999997....999****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.35s 00:00:01.08 Elapsed: 00:00:00.55
# Mc/sec: 3389.34
//
Query:       KKY22809.1  [L=1082]
Description: putative kelch repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.8e-127  425.5   0.0   2.5e-127  425.0   0.0    1.1  1  Glyco_hydro_1  Glycosyl hydrolase family 1
    2.4e-24   84.9   1.5    1.1e-05   25.2   0.0    4.7  4  Kelch_5        Kelch motif
    2.1e-22   78.6   2.3    0.00022   21.4   0.1    4.8  4  Kelch_6        Kelch motif
    2.7e-22   78.5   7.2    4.4e-07   29.8   0.0    4.7  4  Kelch_4        Galactose oxidase, central domain
    3.1e-22   77.6   2.3    2.1e-07   30.7   0.0    4.7  4  Kelch_2        Kelch motif
    5.8e-18   64.7   7.3    1.5e-07   31.5   0.1    4.8  4  Kelch_3        Galactose oxidase, central domain
    7.1e-18   63.9   0.1    9.8e-07   28.3   0.1    4.5  4  Kelch_1        Kelch motif
    2.9e-09   37.1   0.0    5.9e-09   36.1   0.0    1.4  1  BTB            BTB/POZ domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  425.0   0.0  1.1e-130  2.5e-127      15     409 ..     663    1081 ..     658    1082 .] 0.92

  Alignments for each domain:
  == domain 1  score: 425.0 bits;  conditional E-value: 1.1e-130
                     --HHHHH--TTSTT---BHHHHHHHHGGGSTTS---SSTT-HHHHHHHHHHHHHHTT-SEEEEE--HHHHSTTS..TT---HHHHHHHHHHHHH CS
  Glyco_hydro_1   15 taayqiEGawnedGkgesiwDtftetpgkvlegsngdvacdsYhrykeDvallkelgvkayrfSisWpRilPkG..egeinekGlayYerLide 106 
                     +a yqiEGa +edG+g+siwDtf+++pgk+++g+ gdvacdsYhr  eD++llk+ g kayrfS+sW+Ri+P G  +  inekG+ayY +L+d 
     KKY22809.1  663 SAGYQIEGAPTEDGRGPSIWDTFCKIPGKIVDGTSGDVACDSYHRTFEDIELLKKTGAKAYRFSLSWSRIIPLGgrNDPINEKGIAYYVKLVDD 756 
                     799**********************************************************************998899*************** PP

                     HHHTT-EEEEEEESS--BHHHHH.H-GGG-.SHHHHHHHHHHHHHHHHHTTT--EEEEEE-HHHHHHHHHTSS-STT-..........S-TTTH CS
  Glyco_hydro_1  107 lleagieplvTlyHwdlPqaLqd.eGgwen.rsiidafkeyaevvfkrfgdkvklwlTfnEpnvvallgyltgefaPg..........kkdlea 188 
                     lleagi+p++Tl+HwdlP  L++ + g  n ++ + ++++y++++fk + + vk+w+TfnEp+++++lgy tg faPg           ++ ++
     KKY22809.1  757 LLEAGITPMITLFHWDLPDELNNrYDGLLNkEEFVADYTHYSRICFKAMPK-VKHWITFNEPWCSSILGYNTGYFAPGrcsdrtkspmGDSSTE 849 
                     **********************99555555389***************986.********************************999889999* PP

                     HHHHHHHHHHHHHHHHHHHHHHT...TT-EEEEEEEEEEEEESSSSHHHH.HHHHHHHHHHTHHHHHHHHHSS--HHHHHHHGGG..S----HH CS
  Glyco_hydro_1  189 ayeaaHnlllaharavklykeva...qkgkigivlnlslaeplseseedk.eaaeraleflngwfldpvvkGdYpeemkellrergalpeitee 278 
                     ++ ++Hnll+ah+ av+ y+e     +kg+igi+ln +++ep++ s+  +  a++r+lef+  wf+dp++ G+Yp++m+++l++r  lp++t +
     KKY22809.1  850 PWIVGHNLLIAHGSAVQVYREEFksqDKGEIGITLNGDWTEPYDASSSSDrDACQRRLEFSISWFADPIYFGKYPDSMRSQLGSR--LPTFTPS 941 
                     ********************99878899****************9887777********************************99..******* PP

                     HHHHHTT--SEEEEEEEEEEEEEE--...-STT...---SSGGGGG-SBSS-B-SSSS-B-.HHHHHHHHHHHHHTS----EEEEE----EE-B CS
  Glyco_hydro_1  279 dkellkgkadflglnyYtsrlvknkeseeasls...kteekkleeevdpslpktdigwiie.peglrkllellkkeYqklpiyiteNGlgakde 368 
                     +++l+++++df g+n+Y  +++++ +++  s     + +    +++  p+ p+t++ w    + g+rkll++++++Y +++iy+teNG ++k e
     KKY22809.1  942 ELALIHHSNDFYGMNHYCANYIRSRPTPAPSDDfcgNVDVLFHNNTSCPIGPETQSPWLRPhAPGFRKLLKWISDRYARPKIYVTENGTSIKGE 1035
                     ***********************9995544333000333334444446899*******99879***************************9987 PP

                     SSS....HHH--HHHHHHHHHHHHHHHHHH.HTT--EEEEEEE-SB CS
  Glyco_hydro_1  369 iee....gkveDdkRidYlkehlnevkkai.edgvdlkgYvawsll 409 
                              ++D+ R +Y+ e+++++++a+  dgvd++gY+awsl+
     KKY22809.1 1036 NDLseikDLLQDEFRCRYFTEYIEAMAEAVdLDGVDVRGYLAWSLM 1081
                     54344667889*******************88*************9 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.2   4.6e-08    0.0001       7      41 ..      33      68 ..      28      69 .. 0.86
   2 !   17.8   0.0   1.1e-06    0.0024       1      41 [.      80     120 ..      80     121 .. 0.90
   3 !   25.2   0.0   5.1e-09   1.1e-05       2      41 ..     133     172 ..     131     173 .. 0.92
   4 !   15.2   0.0   7.3e-06     0.016       3      41 ..     182     219 ..     182     220 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 4.6e-08
     Kelch_5  7 ghcavtvs.ekiYvyGGkvgrdgsvsddvyvLdlps 41
                ++++ +++ ++iY +GG+++ +++v+++v+ Ldl++
  KKY22809.1 33 NASVTYCGnNQIYAFGGFDQYTDEVYNHVLKLDLNT 68
                67777885489**********************987 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 1.1e-06
     Kelch_5   1 iPppRaghcavtv.sekiYvyGGkvgrdgsvsddvyvLdlps 41 
                 iP  R+gh+a  + ++k++v+GG + +  ++ +dv +Ldl++
  KKY22809.1  80 IPGVRMGHSASLYqGDKLLVFGGEN-EHREYLSDVIILDLKT 120
                 7999******98648**********.678889********87 PP

  == domain 3  score: 25.2 bits;  conditional E-value: 5.1e-09
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdlps 41 
                 P +Ra+h+av++++k+++ GG++g+++ v dd+  Ldl++
  KKY22809.1 133 PKGRARHAAVVYEDKLFIVGGVTGENNYVLDDISYLDLKT 172
                 778******************************8888887 PP

  == domain 4  score: 15.2 bits;  conditional E-value: 7.3e-06
     Kelch_5   3 ppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdlps 41 
                 ++R++h a+++++ ++v+GG +  d++ s +++ Ldl++
  KKY22809.1 182 VARYDHTAWIWGGRLWVFGGLGL-DMERSTEMWWLDLKG 219
                 58********************9.999999999999875 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   9.8e-08   0.00022       6      43 ..      34      74 ..      29      82 .. 0.81
   2 !   19.7   0.0   3.3e-07   0.00074       2      42 ..      84     125 ..      83     136 .. 0.89
   3 !   21.1   0.1   1.2e-07   0.00028       2      41 ..     136     176 ..     135     178 .. 0.96
   4 !   12.6   0.0   5.7e-05      0.13       2      35 ..     184     217 ..     183     220 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.8e-08
     Kelch_6  6 slvs.vgg.kiYifGGytds.spylnkvwvydpetksWeql 43
                ++v+ +g+ +iY+fGG +++ ++ +n v+++d+ t++W+ +
  KKY22809.1 34 ASVTyCGNnQIYAFGGFDQYtDEVYNHVLKLDLNTMNWTLV 74
                4455255459*****************************97 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 3.3e-07
     Kelch_6   2 raghslvsvgg.kiYifGGytdsspylnkvwvydpetksWeq 42 
                 r+ghs+ +++g k+ +fGG +   +yl++v+++d++t  W+q
  KKY22809.1  84 RMGHSASLYQGdKLLVFGGENEHREYLSDVIILDLKTLHWTQ 125
                 899*****9977********988**************99997 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 1.2e-07
     Kelch_6   2 raghslvsvggkiYifGGytds.spylnkvwvydpetksWe 41 
                 ra h++v++ +k++i+GG t+  +  l+++  +d++t++W+
  KKY22809.1 136 RARHAAVVYEDKLFIVGGVTGEnNYVLDDISYLDLKTWTWS 176
                 789*************************************8 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 5.7e-05
     Kelch_6   2 raghslvsvggkiYifGGytds.spylnkvwvydp 35 
                 r+ h++ ++gg++++fGG++ + + ++ + w++d+
  KKY22809.1 184 RYDHTAWIWGGRLWVFGGLGLDmERSTEM-WWLDL 217
                 78899999************997777766.66665 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.5   6.1e-06     0.014       4      45 ..      33      78 ..      32      82 .. 0.83
   2 !   29.8   0.0     2e-10   4.4e-07       2      43 ..      84     125 ..      84     133 .. 0.96
   3 !   14.1   0.3   1.6e-05     0.035       1      43 [.     135     177 ..     135     180 .. 0.91
   4 !   19.5   0.1   3.3e-07   0.00075       1      37 [.     183     218 ..     183     220 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.1e-06
     Kelch_4  4 ghsatsipdgtiylfGGrgedg.tllndlylldlstntWrrl...g 45
                ++s+t+++++ iy fGG    + +++n++ +ldl t  W+ +   g
  KKY22809.1 33 NASVTYCGNNQIYAFGGFDQYTdEVYNHVLKLDLNTMNWTLVdnyG 78
                89***************7654349************9999875555 PP

  == domain 2  score: 29.8 bits;  conditional E-value: 2e-10
     Kelch_4   2 RaghsatsipdgtiylfGGrgedgtllndlylldlstntWrr 43 
                 R+ghsa   +++++ +fGG++e  + l+d+ +ldl+t +W++
  KKY22809.1  84 RMGHSASLYQGDKLLVFGGENEHREYLSDVIILDLKTLHWTQ 125
                 9*********************99****************97 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 1.6e-05
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedg.tllndlylldlstntWrr 43 
                 +Ra h+a++   ++++++GG ++++  +l+d+  ldl+t tW+r
  KKY22809.1 135 GRARHAAVVY-EDKLFIVGGVTGENnYVLDDISYLDLKTWTWSR 177
                 5999****99.69*******988877******999*******98 PP

  == domain 4  score: 19.5 bits;  conditional E-value: 3.3e-07
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedgtllndlylldls 37 
                 +R +h+a  ++ g++++fGG g d++++ +++ ldl+
  KKY22809.1 183 ARYDHTAWIWG-GRLWVFGGLGLDMERSTEMWWLDLK 218
                 799*******6.*********************9997 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   3.9e-05     0.086       5      45 ..      34      74 ..      30      76 .. 0.87
   2 !   20.0   0.0   2.1e-07   0.00048       2      43 ..      84     124 ..      83     127 .. 0.93
   3 !   30.7   0.0   9.3e-11   2.1e-07       1      44 [.     135     177 ..     135     178 .. 0.97
   4 !   10.4   0.0   0.00022      0.49       1      39 [.     183     219 ..     183     221 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.9e-05
     Kelch_2  5 hsss.vpggkiyvvGGahtdnpnlsssdvhvldlekhvWeev 45
                 s++ +++++iy +GG+ ++ ++++ ++v  ldl++  W++v
  KKY22809.1 34 ASVTyCGNNQIYAFGGF-DQYTDEVYNHVLKLDLNTMNWTLV 74
                56663569*********.*********************987 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 2.1e-07
     Kelch_2   2 rgghsss.vpggkiyvvGGahtdnpnlsssdvhvldlekhvWe 43 
                 r+ghs+s + g+k++v+GG    +  ++ sdv +ldl++  W+
  KKY22809.1  84 RMGHSASlYQGDKLLVFGGE--NEHREYLSDVIILDLKTLHWT 124
                 8899999899**********..*****************9998 PP

  == domain 3  score: 30.7 bits;  conditional E-value: 9.3e-11
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvWee 44 
                 +r++h+++v ++k+++vGG+ t+++n + +d+  ldl++++W++
  KKY22809.1 135 GRARHAAVVYEDKLFIVGGV-TGENNYVLDDISYLDLKTWTWSR 177
                 599*****************.*********************86 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00022
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnpnlsssdvhvldlek 39 
                 +r+ h++  +gg++ v+GG   +++ + s  +++ldl++
  KKY22809.1 183 ARYDHTAWIWGGRLWVFGGL--GLDMERSTEMWWLDLKG 219
                 699*****************..**************975 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.1   6.7e-11   1.5e-07       1      48 [.      41      91 ..      41      92 .. 0.91
   2 !   20.5   0.0   1.9e-07   0.00043       1      49 []      94     144 ..      94     144 .. 0.95
   3 ?    5.0   0.5     0.014        31       2      33 ..     146     177 ..     145     185 .. 0.88
   4 !    8.2   0.1    0.0013         3       1      37 [.     193     228 ..     193     244 .. 0.74

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 6.7e-11
     Kelch_3  1 gdrlyifGGlgddgqdrlndvyvydldtntWaei...aslppaRaghaata 48
                ++ +y fGG++  + +++n v+ +dl+t +W+ +   ++ p+ R+gh+a++
  KKY22809.1 41 NNQIYAFGGFDQYTDEVYNHVLKLDLNTMNWTLVdnyGDIPGVRMGHSASL 91
                689********8889*****************7777799**********96 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 1.9e-07
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydldtntWaei...aslppaRaghaatai 49 
                 gd+l++fGG++  ++++l+dv  +dl t  W++    +++p +Ra haa+++
  KKY22809.1  94 GDKLLVFGGEN-EHREYLSDVIILDLKTLHWTQPdlrGPTPKGRARHAAVVY 144
                 79*********.8*********************9**99999*****99875 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.014
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydldtntWae 33 
                 d+l+i+GG ++ ++ +l d   +dl t+tW +
  KKY22809.1 146 DKLFIVGGVTGENNYVLDDISYLDLKTWTWSR 177
                 89********8778888999999*******75 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0013
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydldtntWaeiasl 37 
                 g+rl++fGGlg d  +r+ +++ +dl       i s+
  KKY22809.1 193 GGRLWVFGGLGLD-MERSTEMWWLDLKGSPTFGITSP 228
                 689********98.99999999999976655555444 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.1   0.00045         1      11      25 ..      41      57 ..      37      74 .. 0.74
   2 !   18.6   0.0   4.5e-07     0.001       5      41 ..      88     125 ..      84     126 .. 0.91
   3 !   28.3   0.1   4.4e-10   9.8e-07       2      41 ..     136     177 ..     135     178 .. 0.97
   4 ?    2.0   0.0     0.068   1.5e+02       1      20 [.     183     202 ..     183     218 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00045
                TTEEEEEEEBCS..SSB CS
     Kelch_1 11 ggkiYviGGsdg..gna 25
                +++iY++GG+d    + 
  KKY22809.1 41 NNQIYAFGGFDQytDEV 57
                8**********744444 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 4.5e-07
                 EEEEEETTEEEEEEEBCS.SSBEEEEEEEETTTTEEEE CS
     Kelch_1   5 agavvvggkiYviGGsdg.gnalssvevyDpetntWre 41 
                  ++ + g+k+ v+GG ++  ++ls+v ++D++t  W++
  KKY22809.1  88 SASLYQGDKLLVFGGENEhREYLSDVIILDLKTLHWTQ 125
                 5677889*****************************85 PP

  == domain 3  score: 28.3 bits;  conditional E-value: 4.4e-10
                 BBSEEEEEETTEEEEEEEBCS..SSBEEEEEEEETTTTEEEE CS
     Kelch_1   2 ragagavvvggkiYviGGsdg..gnalssvevyDpetntWre 41 
                 ra+++avv  +k++++GG  g  +  l+++ ++D++t tW++
  KKY22809.1 136 RARHAAVVYEDKLFIVGGVTGenNYVLDDISYLDLKTWTWSR 177
                 9***************************************98 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.068
                 BBBSEEEEEETTEEEEEEEB CS
     Kelch_1   1 aragagavvvggkiYviGGs 20 
                 ar+ ++a   gg++ v+GG 
  KKY22809.1 183 ARYDHTAWIWGGRLWVFGGL 202
                 6889999999*********5 PP

>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   2.6e-12   5.9e-09      20     107 ..     487     576 ..     478     579 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 2.6e-12
                 TEEEEE-HHHHHHH-HHHHHHHTSTTTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC-....CGGGHHHHHHHHHHHT-HHHHHHHHHHH CS
         BTB  20 gkefkahkavLaarSpyFkalftskeieessvseielddvepeafealLefiYtgeleit....seenleelLaaadllqiprlkkaceefl 107
                  + +++hk++L ar p Fk+l   k ++e ++ ++++++  +++++a+L ++Yt+ +  +    + ++++ +L +a+l+++p+l  +c + l
  KKY22809.1 487 SSPIHVHKIILQARWPHFKRLYGAK-MAEFHNGKLHIPE-PYSVVRAFLYYLYTDSIAPSefcqDLTDVAGMLVMANLYDMPKLRLLCVHRL 576
                 5679*********************.8888878787665.79***************9999999999******************9998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1082 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.46
# Mc/sec: 7017.28
//
Query:       KKY22810.1  [L=212]
Description: putative bap31 domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-48  164.6   7.5    1.2e-48  164.4   7.5    1.1  1  Bap31          Bap31/Bap29 transmembrane region
    9.6e-13   47.9   2.6    9.6e-13   47.9   2.6    2.2  2  Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain
  ------ inclusion threshold ------
      0.027   14.3   0.2      0.057   13.3   0.2    1.5  1  PKcGMP_CC      Coiled-coil N-terminus of cGMP-dependent prote
      0.035   14.6   0.3      0.047   14.2   0.3    1.1  1  T3SSipB        Type III cell invasion protein SipB
      0.046   13.5   1.1        1.3    8.9   0.2    2.7  2  DivIC          Septum formation initiator
       0.26   10.7   0.0       0.26   10.7   0.0    1.8  2  DUF4349        Domain of unknown function (DUF4349)


Domain annotation for each model (and alignments):
>> Bap31  Bap31/Bap29 transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.4   7.5   4.1e-52   1.2e-48       1     133 [.       1     139 [.       1     141 [. 0.97

  Alignments for each domain:
  == domain 1  score: 164.4 bits;  conditional E-value: 4.1e-52
       Bap31   1 msLqytlvaalLvaeivvvllLvlPlpsavrkklfksllvsklsaklqialkillifllllflDavrrvrkvseeeeea......aaklkleaesevqa 93 
                 m+L+y+lv++lLvae+v+++ L+lPlp++v++klf+++++s+++aklq+a+ki++if+l+lf+D+v+rv++v+ e ++        a+   ++++evqa
  KKY22810.1   1 MTLYYSLVFVLLVAEMVIFMGLILPLPFTVKRKLFTFISESPIVAKLQYAMKITFIFILILFIDSVNRVYRVEVEVASYsekygaGAASLGSDRMEVQA 99 
                 9*************************************************************************99999999998668899******** PP

       Bap31  94 rkFyaQRNlYlsGftLfLslvlrrlvtliselakleakle 133
                 rkFy+QRNlYl+GftLfLsl+l+r++++i ++++le+kl+
  KKY22810.1 100 RKFYSQRNLYLCGFTLFLSLILNRTYVMILDVLRLEEKLK 139
                 ************************************9987 PP

>> Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.7     0.048   1.4e+02       3      29 ..     131     157 ..     129     158 .. 0.88
   2 !   47.9   2.6   3.2e-16   9.6e-13       2      50 .]     163     212 .]     162     212 .] 0.95

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.048
  Bap31_Bap29_C   3 iekLkkeLkkkkkDlealKkQaeglak 29 
                    + +L+++Lk  + D++a  kQa+ l +
     KKY22810.1 131 VLRLEEKLKMYEGDKKAGGKQADKLDR 157
                    668999***********99***99987 PP

  == domain 2  score: 47.9 bits;  conditional E-value: 3.2e-16
  Bap31_Bap29_C   2 eiekLkkeLkkkkkDlealKkQaeglakEYDrLadehskl.desedKKdd 50 
                    ei +Lkk+L kk+k ++ lK+Qa+gl +EYD L+ +++++  + ++KKd+
     KKY22810.1 163 EIGELKKQLGKKDKQIDGLKSQADGLRREYDELSVKYNQMnPDNTPKKDK 212
                    9****************************************888899996 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   1.9e-05     0.057      10      30 ..     164     184 ..     163     186 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.9e-05
   PKcGMP_CC  10 IRELEkrlaekdeEIqELrsk 30 
                 I EL k+l +kd+ I  L+s+
  KKY22810.1 164 IGELKKQLGKKDKQIDGLKSQ 184
                 77******************9 PP

>> T3SSipB  Type III cell invasion protein SipB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.3   1.6e-05     0.047      32     101 ..     139     210 ..     131     212 .] 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.6e-05
                 HHHHHTTTTT----STHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------- CS
     T3SSipB  32 amskaqqeaasklSdelqta..lseakgatddleaaiekadqaksaadaatkkvdeaqkrlkeLaPdePeka 101
                 +m ++ ++a+ k  d+l +a  l+e  +++++l ++ +++d +ks+ad + +  de   + ++++Pd+  k+
  KKY22810.1 139 KMYEGDKKAGGKQADKLDRAgeLGEIGELKKQLGKKDKQIDGLKSQADGLRREYDELSVKYNQMNPDNTPKK 210
                 466788888888888888886689******************************************986655 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.046   1.4e+02       4      28 ..      54      78 ..      51      85 .. 0.87
   2 ?    8.9   0.2   0.00043       1.3      25      56 ..     163     194 ..     158     201 .. 0.56

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.046
                XXXXXXXXXXXXXXHHHHHHHHHHH CS
       DivIC  4 lfllllifgkkgllaykqlkqeiaa 28
                 f++ li++  +++++++++ e+a 
  KKY22810.1 54 TFIFILILFIDSVNRVYRVEVEVAS 78
                6999******************996 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00043
                 HHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXX CS
       DivIC  25 eiaalqaelaklkaeneeLeaevkdLksdedy 56 
                 ei +l+++l k+ ++++ L+++ + L+ ++d 
  KKY22810.1 163 EIGELKKQLGKKDKQIDGLKSQADGLRREYDE 194
                 44555555555555555555555555544443 PP

>> DUF4349  Domain of unknown function (DUF4349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   1.5       1.3     4e+03     183     200 ..       9      26 ..       6      30 .. 0.83
   2 ?   10.7   0.0   8.8e-05      0.26     109     156 ..     155     200 ..     150     212 .] 0.80

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.3
     DUF4349 183 lveflagllvvlgallPw 200
                 +v ++a++++++g++lP+
  KKY22810.1   9 FVLLVAEMVIFMGLILPL 26 
                 677889999999999996 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 8.8e-05
     DUF4349 109 lekaksvedlleiereLsevqaeieslegqlryLdnqvaystvtvtlr 156
                 l++a+++ ++ e++++L +  ++i+ l++q   L+++     ++v++ 
  KKY22810.1 155 LDRAGELGEIGELKKQLGKKDKQIDGLKSQADGLRREY--DELSVKYN 200
                 89********************************9864..44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1005  (0.0560544); expected 358.6 (0.02)
Passed bias filter:                      628  (0.0350271); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 1289.57
//
Query:       KKY22811.1  [L=224]
Description: hypothetical protein UCRPC4_g03137 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0079   16.8   0.0      0.018   15.7   0.0    1.7  1  GGACT     Gamma-glutamyl cyclotransferase, AIG2-like


Domain annotation for each model (and alignments):
>> GGACT  Gamma-glutamyl cyclotransferase, AIG2-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   9.9e-07     0.018      23      74 ..      13      91 ..       3     161 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 9.9e-07
                EEEEEEEECCTBEEEE.ETTTEEEE.................TTSSE....EEEEEEEE-HHHHHHHHHCT........... CS
       GGACT 23 flesgpatlkgyrlydlggkypalv.................pgdge...kVkGelyevddeelarLDelE..........p 74
                +++++  +l+gy+ y ++++y ++                      +    V G++y++ ++++ +LD +E          +
  KKY22811.1 13 AIPVAITRLNGYSWYITERGYANVKpvtpqtdkqqpvhshesL---SphqYVSGVVYDMAPDDVTYLDGFEgcgprmdphpK 91
                55667778999*9999767999999999999999988776643...03469********************77665554442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1565.17
//
Query:       KKY22812.1  [L=569]
Description: putative gaba permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-66  222.8  46.5    8.2e-66  222.6  46.5    1.0  1  AA_permease_2  Amino acid permease
    4.9e-17   61.7  37.3    6.7e-17   61.2  37.3    1.1  1  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.6  46.5   9.1e-70   8.2e-66       1     423 [.      54     499 ..      54     501 .. 0.89

  Alignments for each domain:
  == domain 1  score: 222.6 bits;  conditional E-value: 9.1e-70
  AA_permease_2   1 lsllsafalvigsvigsgifvknlaas....ggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkva....flsawfnwfay 88 
                    +s++ +f+++++++  +++++++  +s    +gp+ ++w+w+++ ++++ v+l++a l+s +p+sgG+y +t+   ++k+     fl++++n+++ 
     KKY22812.1  54 FSMIEVFGIAFSIMGLLPSIAST--LSfsipAGPVGMVWGWFVASAFIFVVGLAMADLGSSMPTSGGLYYWTHFYASPKWRkylcFLVGYSNTLGL 147
                    78999*********999999995..444467***************************777************998888888888*********** PP

  AA_permease_2  89 vpvlasilsvaasyllnalgp....dlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl....s 176
                    v +l+si + +a ++++++      ++ +++  +y i+ ++++l+ ++ +   k ++k+q++ ++l+++l+++++i+l++   +++ +  +    +
     KKY22812.1 148 VGGLCSIDYGFALMFVSVITIardgNWSPSNGVIYAIFLCCVLLHGVFASTLAKVMGKLQTVFVVLNFILIFATIIALPIGKDKRNDA--AyifsH 241
                    ******************966677799999**************************************76655555555555444444..355888 PP

  AA_permease_2 177 tetdtffpngwpgvllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpd..deianlsnlgsv.aalffeav 267
                     e+ t++p+gw+++l++l+  +w+++Gf+s+++ see+ +  k vp++i ++++ ++++++ + ia++++++   d+i  +s++g++ a+++++a+
     KKY22812.1 242 MENLTTWPTGWSFMLAWLS-PIWTIGGFDSCVHLSEEASNakKAVPFGILMSIGSCWLFGFIILIAIAACMSTdlDSI-LSSPFGQPmAQIYYDAL 335
                    88889************99.89***************8877478*************************988733444.45778886369999999 PP

  AA_permease_2 268 ggkvvaiivvilialsllgaintavigssrvlealardgvlP..rffakvn.kfg.spiraiiltaivslillllfllassaaynfllsvsslgli 359
                    g k +a  ++ l++++ ++++++ ++++sr+ +a+ rdg+lP  r+++kv+ + g +p ra+++ ++++ il+ll+l+a saa ++l+s+++ g++
     KKY22812.1 336 G-KNGALGLMSLLMIVQFLMGLSILVAASRQTWAFTRDGALPfsRYLRKVSvRLGyIPARAVWFCVLLAAILGLLCLIA-SAAASALFSLAVAGNN 429
                    9.7777777779999************************************995527********************99.79************** PP

  AA_permease_2 360 isyllliigalilrkkrphlkrpgk.....ilvaiigalfllfllvalffppkgpa.tqssliytiiltv 423
                    + ++ +i+++l++  ++ + + ++       ++++++++fl+f + +++fp  gp+  +s ++yt+++ +
     KKY22812.1 430 LAWGGPILSRLVWGQNKFVPGPIYTgdrfsRPIGWLAVIFLIFGILLAMFPDGGPNpSPSDMNYTVVINS 499
                    ****************9999886655666459*******************9999878888****99866 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2  37.3   7.5e-21   6.7e-17      23     428 ..      80     476 ..      59     518 .. 0.77

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 7.5e-21
  AA_permease  23 lsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGln.....................ylfswitvlaleltaasi 99 
                     aGp+g++ ++ +a ++if v+l+++ + + +p sgg y++ + + +p++  +  ++                     ++f+             +
   KKY22812.1  80 SIPAGPVGMVWGWFVASAFIFVVGLAMADLGSSMPTSGGLYYWTHFYASPKWRKYLCFLvgysntlglvgglcsidygfaLMFV-------------S 164
                  4579************************************99888877777655555442221555444322222211111111.............2 PP

  AA_permease 100 liqfwelvtdlpkawvtgavflvvlliinlvg...vkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakee 194
                  +i+++      p+  v+ a+fl+ +l+  +++   +kv g+ ++++ ++ +i i a+ii +  ++ ++k+n++   +++ ++++++  + ++      
   KKY22812.1 165 VITIARDGNWSPSNGVIYAIFLCCVLLHGVFAstlAKVMGKLQTVFVVLNFILIFATIIAL--PIGKDKRNDA---AYIFSHMENLTTWPTGW----- 252
                  222222222333344448888888888888754448************************9..6777888888...77777777666677766..... PP

  AA_permease 195 egafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlapli 292
                       +f+ +    + ++ G+ + + +++E+++ +k++P +il+ +    +f  ++l++i ++++++ +++l+ s  + +   i+   +g +++  l+
   KKY22812.1 253 -----SFMLAWLSPIWTIGGFDSCVHLSEEASNAKKAVPFGILMSIGSCWLFGFIILIAIAACMSTDLDSILS-SPFGQPMAQIYYDALGKNGALGLM 344
                  .....99999999999****************************************************99999.56667999**************** PP

  AA_permease 293 naviltaalssansslysasRvlyslakdglaP..kvlkkvskr..gvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliils 386
                   ++ +++ l+ ++s+l++asR+ +++ +dg++P  ++l+kvs r    P+ra+ ++ ++++++ ll  +++a   +   l +++ + + + w+  ils
   KKY22812.1 345 SLLMIVQFLM-GLSILVAASRQTWAFTRDGALPfsRYLRKVSVRlgYIPARAVWFCVLLAAILGLLCLIASA---AASALFSLAVAGNNLAWGGPILS 438
                  ********98.689*********************9999999763258999999999999999988888888...7777788888999999******* PP

  AA_permease 387 ylrfRkalkyqgrsieelgfkaallplgvilvlaaliiilli 428
                   l++ + +++ g  +   +f  + + l vi    +li+ +l+
   KKY22812.1 439 RLVWGQNKFVPGPIYTGDRFSRPIGWLAVI----FLIFGILL 476
                  *******99999988666666655544444....44333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.47
# Mc/sec: 3662.38
//
Query:       KKY22813.1  [L=2761]
Description: putative glycosyl group 1 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-14   53.6   0.0    4.7e-14   52.3   0.0    1.6  2  Glycos_transf_1  Glycosyl transferases group 1
    1.9e-12   47.7   0.0    4.6e-12   46.5   0.0    1.7  1  Glyco_trans_1_4  Glycosyl transferases group 1
     0.0042   16.9   0.0     0.0094   15.7   0.0    1.5  1  DUF3492          Domain of unknown function (DUF3492)
  ------ inclusion threshold ------
      0.012   15.8   0.0      0.026   14.8   0.0    1.5  1  GlcNAc-1_reg     Putative GlcNAc-1 phosphotransferase regulat
      0.066   13.6   0.0       0.25   11.7   0.0    2.0  1  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.9   6.8e+03      65      94 ..    2302    2332 ..    2298    2334 .. 0.87
   2 !   52.3   0.0   1.3e-17   4.7e-14       4     151 ..    2444    2597 ..    2441    2603 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.9
                       HHHHHCTTCGGGEEECCH.SSSHHHHHHCES CS
  Glycos_transf_1   65 laeelelsdnviflgevs.redleellknad 94  
                       l e+l+  ++  f++ ++ +e+++ ++++++
       KKY22813.1 2302 LDEALNMWHRYLFIFSIPvPEKIPDVFQASH 2332
                       6689999******************999986 PP

  == domain 2  score: 52.3 bits;  conditional E-value: 1.3e-17
                       HHHHHTTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCC.HCSCEEEEEES.....STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHH CS
  Glycos_transf_1    4 kkrkklgknekkkiilsvgrlekeKgvdllikafallkkq.lnpnvklviaG....ngeeekelkklaeelelsdnviflgevsredleell 90  
                       k    + ++++k+++++++ ++++K+++++i a +l+  +    +++l+++G      ++  e ++l+++ +l++++i+ g  +      +l
       KKY22813.1 2444 KFEPIKTIKTDKPTVVMLSHIQYVKDIKNAIMATDLIVNKwGFTDYRLHVYGdmerAASHSTECQELIASKGLREHCILKGLGN---PSVVL 2532
                       556677889****************************99999**********9999889999*******************998...88999 PP

                       HCESEEEEEESSBSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSE....EEE-TT-HHHHHHH CS
  Glycos_transf_1   91 knadifvlpsisEgfGivllEAmaaglpviasnaggpaevvkdgetG....llvkpnnaealaea 151 
                       + a +f+ +sisEg++++  EA   g+pv+++++g    vv+d  tG     +v+pn+ae+la+a
       KKY22813.1 2533 QDAWLFLNSSISEGLPLAMGEAALTGVPVVCTDVGASFCVVTDRSTGdrfsEVVPPNDAESLARA 2597
                       99*******************************************77555579999999999987 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   1.3e-15   4.6e-12       2     130 ..    2456    2600 ..    2455    2603 .. 0.82

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 1.3e-15
                       EEEEEES---GG.GTHHHHHHHHHHHH.H....HEEEEEES---......HHHHHHHT..T-T.TEEEE---THHHHHHHH-SEEEE--..- CS
  Glyco_trans_1_4    2 pvilfvGrleenvkgvdllleavpllrkk....dvrlvivGdgprp....eeleelaa..gleerveftGfvedlaellaaadvfvaPs..e 81  
                       p++++++ + + vk ++  + a  l+ +k    d+rl+++Gd +r+     e++el+a  gl+e++++ G   + + +l++a++f++ s  e
       KKY22813.1 2456 PTVVMLSHI-QYVKDIKNAIMATDLIVNKwgftDYRLHVYGDMERAashsTECQELIAskGLREHCILKGLG-NPSVVLQDAWLFLNSSisE 2545
                       788999999.788**********99998876544*******9873345666777766568**********77.9****************** PP

                       --SHHHHHHHHTT-EEEE-TGGGTTT--..TTSS....EE--TT-HHHHHHHHHH CS
  Glyco_trans_1_4   82 gfglkllEamaaglpvVatdvggiaevv..geng....llvppgdpealaeailr 130 
                       g++l++ Ea+  g+pvV+tdvg+   vv    +g     +vpp+d+e+la+a l 
       KKY22813.1 2546 GLPLAMGEAALTGVPVVCTDVGASFCVVtdRSTGdrfsEVVPPNDAESLARAQLS 2600
                       *********************6533344674555654469**********99665 PP

>> DUF3492  Domain of unknown function (DUF3492)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.6e-06    0.0094       9     135 ..    2128    2263 ..    2121    2289 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.6e-06
     DUF3492    9 GTYPyvsGGVSsWvhqlitklpeveFavlfigsdeeeygelkyelPenVveveevylvee...........eeaskapasrkgekaaaetleellea 94  
                  +T+P   GGVS+   +l++ l  +++++++  ++  +yg +++++  nV+ ++  +l+             ++ ++a+++r+ ++++a+ ++++l +
  KKY22813.1 2128 STWPNEPGGVSACRRDLVNDLHTIKWHIVAECAN--DYGVPRFQIERNVQSLTVLPLWGLdflnpthgvlqNSLDSAVVQRSYDTTTADIKKNFLPI 2222
                  79*************************9875555..799*******************987777666665444445555999999999999999999 PP

     DUF3492   95 lkepeaeseellkelleelaeke.kklsledflkskeawdli 135 
                  l +  + ++++ +   ++++e + + ++l++ ++  + w+ +
  KKY22813.1 2223 LTSLVRCTRTV-HLTRQHIEEATqALVDLNTYFEESRNWNDV 2263
                  99988653333.333455555554557888888888888754 PP

>> GlcNAc-1_reg  Putative GlcNAc-1 phosphotransferase regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   7.2e-06     0.026      21      87 ..    1028    1094 ..    1012    1095 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.2e-06
  GlcNAc-1_reg   21 ketnelkskLeeklaekvkllelylekrvalldlndfkdldeLlkddkknvtidndelrLtaasLlW 87  
                      tn l  +L + +a+ + l+  y   +   + l+     ++ lk + +n+t  ++ l+L +a+L W
    KKY22813.1 1028 STTNSLEKRLADGYASTMFLMSWYCKHKRTRMPLPYSATWNLTLKAALENMTNMQKGLKLHSAFLHW 1094
                    5689**************************************************************9 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     7e-05      0.25       2      87 ..    2538    2668 ..    2537    2673 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7e-05
  Glyco_trans_1_2    2 vLnpsrsespnlrlfEaaacGafaltddaegleelftpgk............................................evilfe.. 47  
                       +Ln s se++ l + Eaa  G++++++d  g   ++ +++                                             v+ +   
       KKY22813.1 2538 FLNSSISEGLPLAMGEAALTGVPVVCTDV-GASFCVVTDRstgdrfsevvppndaeslaraqlsvmgllgkwsayaedapgtspPVLAYPnp 2628
                       68888888888889999999999999977.44444444445677777777888899999999999999999999999999999978888888 PP

  Glyco_trans_1_2   48 dleelaekiryllanpeerraiaeaarervlaehtydhra 87  
                       +++++a+  +++ +  e+rr+++  +re vl++++ ++ +
       KKY22813.1 2629 TPDQVAQITQRMYEKTERRRRLGMLGRENVLKNFSSERYL 2668
                       9*********************************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2761 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.22u 0.33s 00:00:01.55 Elapsed: 00:00:00.54
# Mc/sec: 15389.56
//
Query:       KKY22814.1  [L=289]
Description: putative spherulin 4-like cell surface protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-70  237.1   2.6    2.5e-70  236.9   2.6    1.0  1  Spherulin4      Spherulation-specific family 4
  ------ inclusion threshold ------
      0.073   13.0   0.0       0.14   12.0   0.0    1.4  1  Thioredoxin_15  Thioredoxin-like domain
       0.15   11.8   0.1       0.24   11.1   0.1    1.3  1  DUF3328         Domain of unknown function (DUF3328)


Domain annotation for each model (and alignments):
>> Spherulin4  Spherulation-specific family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.9   2.6   4.2e-74   2.5e-70       1     240 []      47     287 ..      47     287 .. 0.95

  Alignments for each domain:
  == domain 1  score: 236.9 bits;  conditional E-value: 4.2e-74
                 EEEEE--S---TTT.THHHHHHHHH-TTS-EEEEE-SSSSS-SSSS--HHHHHHHHHHHTSTTEEEEEEEE-TTTTS-HHHHHHHHHHHHHHHH...TS CS
  Spherulin4   1 kilvPlYiyplksa.WdplfsaikanpslefvvivNPgsGPgsaplpdadYsaalkklsaytnvevlGYvatgygkrelsevkkdidtYaawls...ai 95 
                 ++++PlYiyp +s+ W+pl++a++anp+l+f+vivNP+sGPgs++ pd+dYsaal +ls+y+ v+++GYv+tgy++r++s++ ++i++Ya w++   a+
  KKY22814.1  47 TVILPLYIYPDNSSsWSPLYDALEANPDLKFTVIVNPSSGPGSSTYPDDDYSAALLTLSTYSTVQTVGYVRTGYATRNISTILSEISRYAGWATkssAF 145
                 599********6555******************************************************************************9999** PP

                 --SEEEEES--S..-HHHHHHHHHHHHHHHHSTTSTTT-EEEEE-SS---GGGG.GGSSEEEEEEEEHHHHHHT...TGGGGG..--GGGEEEEEE--- CS
  Spherulin4  96 rldGIFvDEvpt..dakyldylqritdlvkssaattkeaivihNPGtvsedaffsrlaDyvvvfEnslaayedsgdkvsanlatpekrakaaavvhtve 192
                 +++GIF+DE+p+  +++++dy+++i+++vk+++++++e++vihNPGt++++++ ++ +D++vvfE++++ay+++   v++ +a p++r++ ++++++v+
  KKY22814.1 146 AMQGIFFDEAPHeySSTAVDYMRTINEAVKNATGLQGERTVIHNPGTIPDTRYNDTKTDITVVFEDTYEAYQSK---VASLSALPKHRSNYSYMINSVP 241
                 ************99************************************************************...455555678************* PP

                 TTS-T..HHHHHHHHHHHH.H-SEEEE---SSS.TSS--TTHHHHHHHH CS
  Spherulin4 193 ktensekeaikklveavtqhklggvflTdatdd.Yatfssgweefveav 240
                 +  +   + ++k v+ + + +++++ +Td++++ Y++f s+w++f ++v
  KKY22814.1 242 SGMS--VSSLRKFVDRLSR-HAKYLLITDNEEGyYESFGSDWANFTSVV 287
                 8654..467999*****99.9************************9876 PP

>> Thioredoxin_15  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.4e-05      0.14      53     153 ..      69     189 ..      65     197 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.4e-05
                     HHH-TTEEEEEEE--S--SS-THHHHHHHHHTGGGGCT-SSHH...HHHHHHH..............................-------HH... CS
  Thioredoxin_15  53 lksspgvRlgiihnpssdseasslissalsaalkklknleale...fleklleeet..................eellvsgmdkdafekelnaee 126
                     l+++p+   ++i npss   +s+      saal++l+   + +    +++ +   +                  + ++++g+  d+   e++ + 
      KKY22814.1  69 LEANPDLKFTVIVNPSSGPGSSTYPDDDYSAALLTLSTYSTVQtvgYVRTGYATRNistilseisryagwatksSAFAMQGIFFDEAPHEYS-ST 162
                     7899**************77666644444444444444444442227777777666999999999******999999999999999999999.99 PP

                     ...HHHHHHHHHHHTT--TT-EEEEET CS
  Thioredoxin_15 127 akdylkalqkflrvlglepgqnavilN 153
                     a dy+++  + ++ +   +g++ vi N
      KKY22814.1 163 AVDYMRTINEAVKNATGLQGERTVIHN 189
                     999**********77777899999988 PP

>> DUF3328  Domain of unknown function (DUF3328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   4.1e-05      0.24       5      62 ..       7      74 ..       3     112 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.1e-05
     DUF3328  5 krssawrrllllvlllllllllllilssllsssekkaak..........kkspsspspaldaieyelk 62
                + +++w+  l + +++l+++ +++ l+++l+++ ++ +k          ++  ss+sp  da+e ++ 
  KKY22814.1  7 SGRRSWCLPLSIAAIILIIIAIIVPLAVILPRKGHNGHKstvilplyiyPDNSSSWSPLYDALEANPD 74
                56899********************************************************9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.35s 00:00:00.95 Elapsed: 00:00:00.54
# Mc/sec: 1615.91
//
Query:       KKY22815.1  [L=248]
Description: putative cell surface protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-53  180.6   0.1    7.6e-53  179.6   0.1    1.4  1  Spherulin4  Spherulation-specific family 4


Domain annotation for each model (and alignments):
>> Spherulin4  Spherulation-specific family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.6   0.1   4.2e-57   7.6e-53       1     240 []       6     234 ..       6     234 .. 0.94

  Alignments for each domain:
  == domain 1  score: 179.6 bits;  conditional E-value: 4.2e-57
                 EEEEE--S---TTTTHHHHHHHHH-TTS-EEEEE-SSSSS-SSSS--HHHHHHHHHHHTSTTEEEEEEEE-TTTTS-HHHHHHHHHHHHHHHH.....T CS
  Spherulin4   1 kilvPlYiyplksaWdplfsaikanpslefvvivNPgsGPgsaplpdadYsaalkklsaytnvevlGYvatgygkrelsevkkdidtYaawls.....a 94 
                 ++lvPlYiyp           i+++p++ f+vivNP+sGPg +plp +dY+++++kl+a++nv+++GY++ +y+kr+lse  ++i+tYa w++     +
  KKY22815.1   6 TVLVPLYIYP-----------ITTHPNVDFLVIVNPNSGPGGSPLPSHDYVREVPKLNAHPNVTTVGYIKIDYCKRPLSETFEEIETYAGWAKqhehsG 93 
                 589******9...........4689****************99**************************************************999999 PP

                 S--SEEEEES--S..-HHHHHHHHHHHHHHHHSTTSTTT-EEEEE-SS---GGGG.GGSSEEEEEEEEHHHHHHT...TGGGGG..--GGGEEEEEE-- CS
  Spherulin4  95 irldGIFvDEvpt..dakyldylqritdlvkssaattkeaivihNPGtvsedaffsrlaDyvvvfEnslaayedsgdkvsanlatpekrakaaavvhtv 191
                 + ++GIFvDE+p+  +++ ++yl+ + +++kss++  ++++vihNPGt +++ +++  +D++v++E+ + +y+ ++ ++  +   + ++ ++ +++  v
  KKY22815.1  94 LFVEGIFVDETPNhySTDRAQYLDAVLTHIKSSEGILRDKLVIHNPGTPPDAGLADPGPDMIVTCEEPYGRYKGQEVQQRLREY-HYDQPRSGYMISAV 191
                 *************************************************************************99655555544.89************ PP

                 -TTS-T..HHHHHHHHHHHH.H-SEEEE---SSS.TSS--TTHHHHHHHH CS
  Spherulin4 192 ektensekeaikklveavtqhklggvflTdatdd.Yatfssgweefveav 240
                 ++ +       + lv+++++ + +++f+Td+ dd Y++f ++w++fv+a+
  KKY22815.1 192 PEGQI------EPLVSELRH-RGSYLFVTDLVDDfYESFGESWSNFVAAI 234
                 *8654......459*****9.99************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.51
# Mc/sec: 1464.77
//
Query:       KKY22816.1  [L=431]
Description: putative udp-glucose 4-epimerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-35  123.4   0.2    8.7e-35  120.3   0.2    2.3  1  Epimerase        NAD dependent epimerase/dehydratase family
    2.1e-35  122.7   0.0      2e-34  119.5   0.0    2.2  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    1.2e-09   37.8   0.0    8.2e-07   28.4   0.0    2.1  2  NAD_binding_4    Male sterility protein
    8.7e-08   31.5   0.3    6.1e-06   25.4   0.6    2.9  3  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    3.9e-06   26.2   0.1    7.9e-05   21.9   0.1    2.8  3  Polysacc_synt_2  Polysaccharide biosynthesis protein
     0.0018   17.7   0.0      0.003   17.1   0.0    1.3  1  adh_short        short chain dehydrogenase
     0.0075   16.2   0.3      0.048   13.6   0.3    2.0  1  KR               KR domain
  ------ inclusion threshold ------
      0.043   12.9   0.1       0.36    9.9   0.1    2.4  1  RmlD_sub_bind    RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.2   3.9e-38   8.7e-35       1     241 []      51     357 ..      51     357 .. 0.87

  Alignments for each domain:
  == domain 1  score: 120.3 bits;  conditional E-value: 3.9e-38
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.................EEEE--TT-HHHHHHHHHHHT-S............EEEE CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.................elveldltdrsalerlfkeeqpd............avih 70 
                 +lVtG+ GfiGs++v +ll++gy+vi +d ls++++   ++ l                 el++  ++d  a++++++++ p              vih
  KKY22816.1  51 VLVTGGLGFIGSHTVLELLKAGYNVIIVDDLSNSFHDVFNRILrianqhfehcvgrcpkaELHKTSYRDVPAMRAVLESHCPAnlprdqlrttiiGVIH 149
                 79*****************************99998776666699***************9999999999999999998876423333333333369** PP

                 --S---HHHHHHSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEEGGGGT.....................SCSSSS...BSTCSTTS----SSHHHHH CS
   Epimerase  71 lAavggvaassedpadfieknlqgtlnlleaarkagvkrllflsSsevYG.....................kdaeqp...keettltgplkpnspYaaa 145
                 +Aa + v++s+++p +++++n+ g ++ +  ++++++k +++ sS++vYG                     +         +  +++g +  ++pY+++
  KKY22816.1 150 FAAFKAVEESISQPLKYYQNNVSGLVDFMALLNEYNIKTFIYSSSATVYGtladgsrllreehcvhedetyQ----DvdgIKRRAQQGCTGITNPYGRT 244
                 ***************************************************************998644331....23446667767777********* PP

                 HHHHHHHHHHHHHHH.T-EEEEEEESEEESTT.......S-TTSTTSHHHHHHHHHHTTS.SSEEEET......TST-EEEEEEHHHHHHHHHHHHHHH CS
   Epimerase 146 Klageklveayaaqy.glnaiilrlfnlyGpr.......ngegevsrvipalirkilegk.qevtllg......dgtalRdflyveDvaeaillvlehv 229
                 K  ge ++ ++a++   +n++ lr+fn +G         +++g+ ++++p +++    g+ +e+ ++g      dgt  Rdf++v D+a++++++l + 
  KKY22816.1 245 KFIGEAILSDLARSDpAWNIVGLRYFNPIGCDasgllgeDPKGDATNLLPVVVKV-MMGEyEELSVYGgdwntrDGTTIRDFIHVTDLARGHIAALSAA 342
                 ***************9**************99999**9999999******66665.567779************************************8 PP

                 TT-ST...TEEEEES CS
   Epimerase 230 dagdk...geiyniG 241
                 +ag+     +++n+G
  KKY22816.1 343 QAGRIqgsYRTFNLG 357
                 888764334467766 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   0.0     9e-38     2e-34       1     331 [.      52     419 ..      52     420 .. 0.77

  Alignments for each domain:
  == domain 1  score: 119.5 bits;  conditional E-value: 9e-38
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-T..THHHHHCTTT...TTGC...CEEEEE--TT-HHHHHHHHHHH............T-SEE CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfn..tgriehlakdpkeelee...nlklhkgDltDssslerllaev............qpdev 79 
                    L+TG+ GfiGs+++  Ll+ gy+v++++++s+sf+  ++ri ++a+++ e+  +   + +lhk   +D  +++ +l+++             +  v
     KKY22816.1  52 LVTGGLGFIGSHTVLELLKAGYNVIIVDDLSNSFHdvFNRILRIANQHFEHCVGrcpKAELHKTSYRDVPAMRAVLESHcpanlprdqlrtTIIGV 147
                    9*******************************9964468888887666555544344799*****************9944444444333344569 PP

                    EE--S---HHHHTTSHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-........SSSSB-TTS----...............-SH CS
  GDP_Man_Dehyd  80 ynLAAqshVdvsfekPeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkv........qevpqtEttpfyP...............rsP 152
                    +++AA ++V++s+++P +++++nv G +  + +  +++++    f+ +S+++vYG++        +e+ ++E+  ++                ++P
     KKY22816.1 148 IHFAAFKAVEESISQPLKYYQNNVSGLVDFMALLNEYNIK---TFIYSSSATVYGTLadgsrllrEEHCVHEDETYQDvdgikrraqqgctgiTNP 240
                    ***********************************99985...7************9333222222344455544444777888888888888*** PP

                    HHHHHHHHHHHHHHHHHHH---.EEEEEE-E....EESTTS-TT..SCCCHHHHHHHHHHTTS.-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCS CS
  GDP_Man_Dehyd 153 YaaaKlyadwivvnyreayglf.avngilfn....hesprrget..fvtrkitravarialgk.qevlylGnldakRdwghvkDyveamwlmlqqd 240
                    Y+ +K + + i  +  ++   + +v  ++fn      s   ge+      ++ ++v+++ +g+ +e  ++G   ++Rd + ++D++++ +l+  + 
     KKY22816.1 241 YGRTKFIGEAILSDLARSDPAWnIVGLRYFNpigcDASGLLGEDpkGDATNLLPVVVKVMMGEyEELSVYGGDWNTRDGTTIRDFIHVTDLARGHI 336
                    ******************9987255579***99997888888864477888999999999999566667899999999999999999999844444 PP

                    S---EEE-TT-EEECHHCHHCCHHCCCHHHHHH.............TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHHHH CS
  GDP_Man_Dehyd 241 kpedyviatgethsvrefvelaflelgktiewegkgeee.vgrakesgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvre 331
                     +        +  ++++  +  +l +g+     g+++ e v+++++ ++ +++ + + +r g+v+  ++ +++a++eLgW+ k s+++ +r+
     KKY22816.1 337 AALSAA----QAGRIQGSYRTFNLGTGI-----GNSVLEiVAAMESVSERKIPRKVVGRRVGDVQSSVAATDRARRELGWETKESLTDACRD 419
                    333333....333344333333333333.....2223331444566677889999999******************************9997 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0011       2.4       1      23 [.      53      75 ..      53      99 .. 0.87
   2 !   28.4   0.0   3.7e-10   8.2e-07      83     193 ..     139     258 ..     135     286 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0011
                   EE-TTSHHHHHHHHHHHHHS-.T CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpev 23
                   +TG+ GF+G++ + +LL+   +v
     KKY22816.1 53 VTGGLGFIGSHTVLELLKAGYNV 75
                   7****************987764 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 3.7e-10
                    HHHHH--EEEE--SS-S.STTSSE...EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H...............HHH--EE CS
  NAD_binding_4  83 elaeevdviihsaAtvnfdepyke...llrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeege.........keekldeder 166
                    +l  ++  +ih aA   ++e++++    ++ Nv G ++ + l ++ + + ++++ S+a+v+g+  +    ++++e++         + +  +  ++
     KKY22816.1 139 QLRTTIIGVIHFAAFKAVEESISQplkYYQNNVSGLVDFMALLNEYNIK-TFIYSSSATVYGTLADGS--RLLREEHcvhedetyqDVDGIKRRAQ 231
                    566777789************9986667889**************9999.*******99998887653..44443334666666554455555566 PP

                    EETTTCCCHHHHHHHHHHHHHHHHHHH CS
  NAD_binding_4 167 aklkglpntYeqsKalaEklvrearrr 193
                    +  +g++n Y ++K+++E ++ + +r+
     KKY22816.1 232 QGCTGITNPYGRTKFIGEAILSDLARS 258
                    6667899**************998854 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.6   2.7e-09   6.1e-06       1     143 [.      52     221 ..      52     232 .. 0.73
   2 ?   -2.9   0.0       1.2   2.7e+03       7      26 ..     245     264 ..     242     265 .. 0.85
   3 ?   -1.9   0.0      0.59   1.3e+03     207     231 ..     317     341 ..     307     349 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.7e-09
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlD.............lrespellee.lskvnvkkviegDvtdkdkleealeg...vdv...........vi 71 
                 +vtGg GF+G++ v eL++++   +v ++D             lr+ ++  e+ + ++  ++++++  +d + ++++le+   +++           vi
  KKY22816.1  52 LVTGGLGFIGSHTVLELLKAGY--NVIIVDdlsnsfhdvfnriLRIANQHFEHcVGRCPKAELHKTSYRDVPAMRAVLEShcpANLprdqlrttiigVI 148
                 69*******************4..777777799***99999996665555444145566666888888888888887775222111222222233348* PP

   3Beta_HSD  72 hlaslvdvag.kltedeimkvnvkGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeley.eslhq 143
                 h a+   v     +  ++++ nv G    ++   + ++++++Y Ssa v g    g  +l+ +E+  + ++++q
  KKY22816.1 149 HFAAFKAVEEsISQPLKYYQNNVSGLVDFMALLNEYNIKTFIYSSSATVYGTLADGSRLLR-EEHCVHeDETYQ 221
                 ********994456679**********************************9888888884.444433034444 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.2
   3Beta_HSD   7 GFlGralvkeLvrleelkev 26 
                  F+G+a+ + L r ++++++
  KKY22816.1 245 KFIGEAILSDLARSDPAWNI 264
                 5***********99998876 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.59
   3Beta_HSD 207 gdeevlsdrvYvgNvawahilAara 231
                  d  ++ d++ v  +a  hi A  a
  KKY22816.1 317 RDGTTIRDFIHVTDLARGHIAALSA 341
                 5677899*************99876 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   3.5e-08   7.9e-05       1     128 [.      51     194 ..      51     223 .. 0.72
   2 ?   -1.0   0.0      0.34   7.7e+02     135     173 ..     238     274 ..     235     278 .. 0.81
   3 ?   -2.7   0.0       1.1   2.5e+03     233     267 ..     361     389 ..     324     393 .. 0.64

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 3.5e-08
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-H......HHHHHHHHH.............-TTEEEE....E--TT-HHHHHHHTT.....T- CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdE......lklyeieke.......leeelkkkklkveivpvigdvrdkerlekalee...lkv 78 
                      vlvtG+ G iGs+ v ++lk   + ii+ + +       +++ +i+++          +++ +k++++ vp +  v +++  +++ ++   +++
       KKY22816.1  51 VLVTGGLGFIGSHTVLELLKAGYNVIIVDDLSNsfhdvfNRILRIANQhfehcvgRCPKAELHKTSYRDVPAMRAVLESHCPANLPRDqlrTTI 144
                      89*******************9999988766652111213445555555555433223334445556667777777776655444332111455 PP

                      SEEEE------HHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE CS
  Polysacc_synt_2  79 dvvfhaAAlKhVPlveenpleaiktNvlgtenvieaaieagvkkvvliSt 128
                        v+h AA+K V    ++pl+  ++Nv g    +    e+++k++++ S+
       KKY22816.1 145 IGVIHFAAFKAVEESISQPLKYYQNNVSGLVDFMALLNEYNIKTFIYSSS 194
                      5689******************************************9876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.34
                      -SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETT CS
  Polysacc_synt_2 135 tnvmGatKrlaekllqalakeseekktkfvvvRfGNVlg 173
                      tn +G tK + e +l  la++      ++v  R+ N +g
       KKY22816.1 238 TNPYGRTKFIGEAILSDLARSD--PAWNIVGLRYFNPIG 274
                      799************9999987..567778888877666 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.1
                      EEEHHHHHHHH..........SSSS-EEE----TT CS
  Polysacc_synt_2 233 pvkivdlakalielsgleekkeedieikitGlRpG 267
                        ++++++ a+ ++s      e +i+ k++G R G
       KKY22816.1 361 GNSVLEIVAAMESVS------ERKIPRKVVGRRVG 389
                      444445555553222......45788888888877 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.3e-06     0.003       3      50 ..      51      99 ..      49     122 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.3e-06
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSE CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gak 50
                vlvtG+ + IG  ++ el+k+G++v++vd  ++  + v + + +  +++
  KKY22816.1 51 VLVTGGLGFIGSHTVLELLKAGYNVIIVDDLSNSFHDVFNRILRIaNQH 99
                9****************************99999999988887764444 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.3   2.1e-05     0.048       3     142 ..      51     199 ..      50     205 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.1e-05
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS.........--HHHHHHHHHHHHTT-........EEEE----TT-HHHHHHHHHH.....HHHHS.. CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsa.......aadedskaliaelealga........evevvaaDvsdkdaveallee.....ikaee.. 79 
                 +l+tGGlG +G +++  l++ g + +++   s+       +        i +++++          + e+ +    d  a++a+le+     + +++  
  KKY22816.1  51 VLVTGGLGFIGSHTVLELLKAGYNVIIVDDLSNsfhdvfnR--------ILRIANQHFehcvgrcpKAELHKTSYRDVPAMRAVLEShcpanLPRDQlr 141
                 69*********************999995555322444442........33333332222233333555555555555555555543111114555556 PP

                 S---EEEE---------TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH- CS
          KR  80 ppikGvihaAgvlrdklleemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllg 142
                  +i Gvih A + +   + e + ++  + ++  v+G+     ll++ +++ f++ SS a+++g
  KKY22816.1 142 TTIIGVIHFAAFKA---V-EESISQPLKYYQNNVSGLVDFMALLNEYNIKTFIYSSS-ATVYG 199
                 88999999987644...3.34555666778889999999999999999999986555.55555 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00016      0.36      50     109 ..     142     216 ..      49     265 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00016
                    H--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-.EEEEEEEGGGS-S-..............T CS
  RmlD_sub_bind  50 akpdvvvnaAAytavDkaEseeeaayavnaeavealAeaaaavga.lLihvStDyVFdGe..............k 109
                    +    v++ AA++av +  s++ + y+ n+ +     ++ +++++ ++i+ S+  V+                 +
     KKY22816.1 142 TTIIGVIHFAAFKAVEESISQPLKYYQNNVSGLVDFMALLNEYNIkTFIYSSSATVYGTLadgsrllreehcvhE 216
                    444469**************************9888888888887369999999998433334467666666663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.51
# Mc/sec: 2563.87
//
Query:       KKY22817.1  [L=416]
Description: putative ran-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-30  103.6   0.1    1.6e-29  102.7   0.0    1.5  2  CLTH      CTLH/CRA C-terminal to LisH motif domain
    5.9e-21   74.8   0.3      1e-20   74.1   0.3    1.4  1  SPRY      SPRY domain
     0.0031   17.4   0.2       0.01   15.8   0.0    2.0  2  LisH      LisH


Domain annotation for each model (and alignments):
>> CLTH  CTLH/CRA C-terminal to LisH motif domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.1   6.8e+03      14      27 ..     127     140 ..     121     159 .. 0.78
   2 !  102.7   0.0   2.7e-33   1.6e-29       3     140 ..     203     391 ..     201     399 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.1
        CLTH  14 egdlseaiewinen 27 
                 +++++ ai+++n++
  KKY22817.1 127 QRKIEMAINRTNTS 140
                 56777888887775 PP

  == domain 2  score: 102.7 bits;  conditional E-value: 2.7e-33
        CLTH   3 kerqkIiklilegdlseaiewinenkpellesnsnLeFkLkllqfielirg..........kt.................................... 55 
                 ++rq+++ +i egd+++a++ +n ++p +le+++++ F Lk+++f+elir+          k+                                    
  KKY22817.1 203 INRQRVRVAIMEGDIDKALKLTNAFYPHVLEESPQIVFRLKCRKFVELIRRysdlqyktsgKMgkasnrangvsdvfeqdmelddqtdsaawdgmdtdd 301
                 79************************************************8888877666611555666666677777777777777777777777655 PP

        CLTH  56 kd......ieealeyarenlefend...ehlkelekamsLLafsdpeskelssplknlldpsrrekvakefnsailkllglskespLeillsag 140
                 +d      ++ea++y++   + + d   e++k le+++sL+a+ d +     s +++lld+s r++va+e+nsail +lg+ ++++Le ++++ 
  KKY22817.1 302 TDhlrmalLQEAMAYGQILQREYRDerrEFKKALEDIFSLMAYDDAKA----SLHGHLLDSSGRVPVAEELNSAILVSLGKASSAALERVYQQC 391
                 11566677*********933322224679**************99665....689**********************************99985 PP

>> SPRY  SPRY domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.3   1.7e-24     1e-20      12     119 ..       5     112 ..       1     113 [. 0.93

  Alignments for each domain:
  == domain 1  score: 74.1 bits;  conditional E-value: 1.7e-24
                 TSSEEEEEEEETTSSSSSTSSSTSSTTEEEEETETTEEE.EETESCEEEESSSSTTSEEEEEEETTTTEEEEEETTEEEEEEEESTTTSSEEEEEEE.. CS
        SPRY  12 eggsisvGlateqtdlsdksgegddrgswglcgdngtrt.saeqskaygkqparegdviGvalDleegelsFtkngknlgvaFrnvrgaelfPvvslg. 108
                 ++g i vG++ ++++   ++  g++ +sw+++gd+g+ +  ++++k+yg+ ++ ++ viG+++++++g ++Ftk g  lg+aFr+++++++fP v ++ 
  KKY22817.1   5 KDGMIAVGVSGQKAS--LERLPGWETDSWAYHGDDGKAFgGESTGKNYGP-TFSTNNVIGCGVNFSTGCIFFTKDGNFLGNAFRELKDLKVFPSVGMKk 100
                 6788999*9999999..666679****************9**********.**********************************************98 PP

                 .STCEEEEESSE CS
        SPRY 109 .ngaslkinlgl 119
                  +ga +  n+g+
  KKY22817.1 101 hAGAHIAANFGQ 112
                 889999999986 PP

>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.7e-06      0.01       6      25 ..     155     174 ..     150     175 .. 0.91
   2 ?   -1.8   0.0      0.58   3.5e+03       1       8 [.     366     373 ..     366     373 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHCT-HHHHHHHHH CS
        LisH   6 LIydYLvkeGyeetAeaFek 25 
                 L+  +L + Gy+etA+aF+k
  KKY22817.1 155 LVAQFLAHDGYVETARAFAK 174
                 999***************99 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.58
                 HHHHHHHH CS
        LisH   1 eeLNrLIy 8  
                 eeLN+ I+
  KKY22817.1 366 EELNSAIL 373
                 79***996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       819  (0.0456802); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 2622.13
//
Query:       KKY22818.1  [L=265]
Description: hypothetical protein UCRPC4_g03144 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.2e-60  203.0  21.3      1e-59  202.5  21.3    1.2  1  INO80_Ies4   INO80 complex subunit Ies4


Domain annotation for each model (and alignments):
>> INO80_Ies4  INO80 complex subunit Ies4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.5  21.3   5.7e-64     1e-59      12     242 .]       6     233 ..       1     233 [. 0.73

  Alignments for each domain:
  == domain 1  score: 202.5 bits;  conditional E-value: 5.7e-64
  INO80_Ies4  12 skdrrksekakkklivtlkvspekLrailed.kekekkeekespasssaapaakaeskadnasdsnsatPa......egtPapssaamgpptekggpkk 103
                 sk+  k++k+++k+iv+lk++p+ L++ +++ k++e+ ++k +p ++s +++     +++n  +s+  tPa       +tPaps  a g+ ++kg + +
  KKY22818.1   6 SKN-DKKAKTSAKKIVILKLAPDVLAKYPSSsKSQETAQSKIKPDPDSMSTSG----SGNNGENSANGTPAdnvsesPSTPAPSDLANGDSKKKGPSSS 99 
                 333.3444566667***************942222222222223222222222....2233333333333333444455******9999999999999* PP

  INO80_Ies4 104 kagvKRsaaaaadgepaakvRgkPGPKKkarLeDGtideeaeraaaa....ahkLGPKAnqGaINAgLRALDRsGkPCRkWekkglqlksFTGvvweip 198
                 k+gvKRs  +   g+p  ++Rg+PGPKKk+rL+DGt ++ +++   a    ++kLGP+ nqGaINA LRALDRs kPCRkWekk++ lksFTGv+we+p
  KKY22818.1 100 KSGVKRSLGE---GTP--RPRGRPGPKKKPRLDDGTDENVRTSFGGAvplvTNKLGPRGNQGAINARLRALDRSRKPCRKWEKKPFVLKSFTGVMWEVP 193
                 *******965...455..******************8887774333344679*********************************************** PP

  INO80_Ies4 199 rWrappkkkpeeeeeesaaasaseegdssskenens.qvkseksn 242
                 +W+ap+++  +    ++a+  +s++g+s+sk ne+s   +seksn
  KKY22818.1 194 SWKAPRQELVN----GDAN-GTSNTGESESKPNESStGLPSEKSN 233
                 *****997773....3333.3445788999999777799***997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.54
# Mc/sec: 1481.66
//
Query:       KKY22819.1  [L=849]
Description: putative aif-like mitochondrial oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-51  174.3   0.4    3.3e-51  174.3   0.4    1.7  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.3e-14   54.5   0.4    1.3e-14   54.5   0.4    2.9  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    4.4e-13   49.0   0.0    1.2e-12   47.6   0.0    1.7  1  Rieske         Rieske [2Fe-2S] domain
      3e-08   34.1   0.0    9.5e-08   32.5   0.0    1.9  1  Reductase_C    Reductase C-terminal
    1.7e-06   27.5   0.0    4.5e-05   22.9   0.0    2.4  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.039   13.9   0.0    1.8  1  CusF_Ec        Copper binding periplasmic protein CusF
      0.031   14.2   1.6       0.21   11.4   0.8    2.2  2  PRR18          Proline-rich protein family 18
       0.17   11.8   0.1        2.9    7.8   0.0    2.8  3  NAD_binding_9  FAD-NAD(P)-binding
       0.34   10.8  14.7      0.078   12.8   0.4    2.9  3  Mei5           Double-strand recombination repair protein
        1.3    8.9   3.5        1.1    9.1   0.1    2.3  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       3.3   5.9e+03     195     232 ..     205     244 ..     197     271 .. 0.63
   2 !  174.3   0.4   1.8e-54   3.3e-51       2     294 .]     434     740 ..     433     740 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3.3
                  HTTEEEEESCEEEEEEETTE.EEEEEETTSCE.EEESEEE CS
                  xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxxx RF
  Pyr_redox_2 195 keGvevklgtsvkeidgnge.klevvledgee.idadlvv 232
                  ++ +e++ +++++++++ g  + e +led++e + +d+++
   KKY22819.1 205 QQQIEIQKEEMAEDAEKYGLnDREEELEDEDEtFSMDMML 244
                  4567777777777777666542334444444446666665 PP

  == domain 2  score: 174.3 bits;  conditional E-value: 1.8e-54
                  SEEEE--SHHHHHHHHHHHH..HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHH.CCCCHCCTCEEEEESCEEEEETEEECTCEE CS
                  xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq..agakvtlvelegtclnggcllskallgvaedaeiasevvkklnqg.ielllgeevvkidpgkkkvklekkkegdee 96 
                  +vv++GgG + + a ++l++  +++ +t++  e+  + ++  lskal   a++   +s++   +++  i+ + + +v+++d+ kk v+      ++++
   KKY22819.1 434 KVVIVGGGSGTFGAFERLRTlgYKGAITILTGEDSGPIDRTKLSKALIPDASKLALRSKE--WYSNAaIDIVPE-TVTTVDFSKKIVTG-----KSGK 523
                  8*******************7777788999889999*********999999999888844..455552666666.9********89998.....5677 PP

                  EEEESEEEE---EEE-BCTCTTC..TTBEECCSECHHHHHHCCSS-T...SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2  97 kiaydklvlAtGssprdlgipGv.aenvgklvrtldsaealklkllp...krivvvGgGyiGvElAaalaklgkevtlveardrll.raldkelsaal 189
                  +++y +l+lA+G++p++l++pG  + ++++++r++ +++ +  +  +   k+ivvvG+++iG+E+  ala  +++vt++    ++l r ++++++ + 
   KKY22819.1 524 TYDYTSLILAPGGTPKKLPMPGFkKLDNIFVLRNVGHVNDILAAAPEgsgKKIVVVGSSFIGMEVGNALAGKKHDVTIIGMERTPLeRVMGEKVGSIF 621
                  9**********************655678888999999999888888999************************************************ PP

                  HHHHHHTTEEEEESCEEEEEEETTE...EEE.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBES.STTEEE-GGGC.... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx...xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.... RF
  Pyr_redox_2 190 eealekeGvevklgtsvkeidgnge...kle.vvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflrtn.vpgiyaiGDva.... 278
                  ++ lek+Gv++++ +sv ++++ ++   k+  v+l+dg++++adlv+++vGv p te+l +++g+  +++g +++de+ +++  +++yaiGD+a    
   KKY22819.1 622 QKLLEKSGVKFRMDASVDDATPSSSdssKVGgVKLKDGTTLEADLVILGVGVAPATEFL-KDSGVDFEKDGSLKTDENFAVEgLKDVYAIGDIAtypy 718
                  ***********************998554449***************************.*********************99*************** PP

                  ......TECCSS--HHHHHHHH CS
                  ......xxxxxxxxxxxxxxxx RF
  Pyr_redox_2 279 ......ggkggpelaqaAvqqG 294
                        g+ +++e++ +A+++G
   KKY22819.1 719 hgpggdGTPTRIEHWNVAQNAG 740
                  ***9999999********9987 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   2.5       7.9   1.4e+04       1       8 [.     434     441 ..     434     443 .. 0.91
   2 !   54.5   0.4   7.4e-18   1.3e-14       1      80 [.     575     658 ..     575     659 .. 0.92
   3 ?   -3.0   0.0       6.2   1.1e+04      47      59 ..     828     840 ..     825     841 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 7.9
                 EEEEECSS CS
   Pyr_redox   1 kvvvvGgG 8  
                 kvv+vGgG
  KKY22819.1 434 KVVIVGGG 441
                 79*****9 PP

  == domain 2  score: 54.5 bits;  conditional E-value: 7.4e-18
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEE..EETTS.EEEEEEET CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekngievllntkveeie..gsedg.vesvklkd 80 
                 k+vvvG+++ig+E+++ala  +++Vt++ ++ ++l r+++e++++i+q+ lek g++++++++v   +   s++  v +vklkd
  KKY22819.1 575 KIVVVGSSFIGMEVGNALAGKKHDVTIIGMERTPLeRVMGEKVGSIFQKLLEKSGVKFRMDASVDDATpsSSDSSkVGGVKLKD 658
                 79*****************************************************************97633344488999886 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 6.2
                 HHHHHHTTEEEEC CS
   Pyr_redox  47 qeklekngievll 59 
                 +++l+++g++vl+
  KKY22819.1 828 KTQLKDQGVDVLT 840
                 6799******987 PP

>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   6.7e-16   1.2e-12      10      88 ..     317     398 ..     309     399 .. 0.85

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 6.7e-16
                 GC-TTCEEEEEETTEE...EEEEE-TTS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEE.TTSBEEE-TTHHHEEEE CS
      Rieske  10 dvpegdpltvkvggep...lvvlrdedgevyAlsdvCtHrgaplsegkidekgvleCpcHgwayd.adGkvikgPaprplaty 88 
                 d+++gd ++ +v g +   +++++  +g+v  ++  C+H gapl++g ++ +g+l+Cp+Hg++++ ++G+v ++Pap+pl  +
  KKY22819.1 317 DLKDGDKVEAEVEGIDggkVLLIKM-NGKVSGINANCSHFGAPLKNGVLTPDGRLTCPWHGACFNtTTGDVEDAPAPDPLGVF 398
                 6777777777766554554999995.***********************9999************************998665 PP

>> Reductase_C  Reductase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   5.3e-11   9.5e-08       2      81 ..     759     838 ..     758     841 .. 0.93

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 5.3e-11
                  EEEEETTEEEEEEE-.-TT--EEEEEEETTTTEEEEEEEETTEEEEEEEES-HHHHHHHHHHTTTT----HHHHH-TTS-H CS
  Reductase_C   2 fWSDqydlklQiaGl.atgadevvvRgdpeerafsvfylrdgrlvaveavnrprdlmaarrliaagasvdpaalaDpavdL 81 
                  fWS   + +l+++G  ++g+d++v+ g+p+e++f+++y +++++vav+++ +   +  + +l+ +g+ +++++l D+ vd+
   KKY22819.1 759 FWSA-LGSQLRYCGAtPNGYDDIVLTGEPDEAKFVAYYCKGETVVAVATMMKDPVMTKCAELMRRGKMPTKTQLKDQGVDV 838
                  7775.5689*****8689***********************************************************9986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0036       6.5     158     270 ..     426     539 ..     405     548 .. 0.66
   2 !   22.9   0.0   2.5e-08   4.5e-05     104     305 .]     507     711 ..     503     711 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0036
  Pyr_redox_3 158 efhkyagqkvvViGgknSavDaAlelvrk..gaeVtvvtrgseiekeesdpsyslkpdien...rleelvkeekikvlfnaevkeikekeeeykvkte 250
                  +++    qkvv++Gg+   + a   l        +t++t +++   ++++ s  l pd  +   r +e +++ +i+++ + +v+ ++ +++   v+ +
   KKY22819.1 426 KVNAADAQKVVIVGGGSGTFGAFERLRTLgyKGAITILTGEDSGPIDRTKLSKALIPDASKlalRSKEWYSNAAIDIVPE-TVTTVDFSKK--IVTGK 520
                  4556689********98766654333333225679999988888888899*******98763224455555566777666.6777776544..35566 PP

  Pyr_redox_3 251 dgkkvevkddvvlatGykpd 270
                  +gk+   ++  +la G +p+
   KKY22819.1 521 SGKT-YDYTSLILAPGGTPK 539
                  6544.567889999988876 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 2.5e-08
  Pyr_redox_3 104 VesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeek..lvkhyskvkefhky.......agqkvvViGgknSavDaAlelvrkgaeVtv 192
                  V++v+ +++  +   s +ty  +++i+A G    P+kl +pG +k  +  + ++v +++++       +g+k+vV+G +  ++++   l+ k ++Vt+
   KKY22819.1 507 VTTVDFSKK-IVTGKSGKTYDYTSLILAPGG--TPKKLPMPGFKKldNIFVLRNVGHVNDIlaaapegSGKKIVVVGSSFIGMEVGNALAGKKHDVTI 601
                  444544432.222334469***********8..9********9974434444555444332222222279**************************** PP

  Pyr_redox_3 193 vtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkkslfeldedgrpvlt 290
                  +  + +  ++   +  ++  + ++ le+   + ++++  +  + + +++++   vk +dg+++e+ d v+l +G  p ++flk+s+++ ++dg  + +
   KKY22819.1 602 IGMERTPLER--VMGEKVGSIFQKLLEKSGVKFRMDASVDDATPSSSDSSKVGGVKLKDGTTLEA-DLVILGVGVAPATEFLKDSGVDFEKDGSLKTD 696
                  *988754444..3566666666666666554444555555555555555555678999*988775.788888***********************999 PP

  Pyr_redox_3 291 eeteetnvpglflaG 305
                  e+     +++++ +G
   KKY22819.1 697 ENFAVEGLKDVYAIG 711
                  998888888888877 PP

>> CusF_Ec  Copper binding periplasmic protein CusF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.2e-05     0.039      27      66 ..     303     341 ..     296     342 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.2e-05
                 SEEEEEE--TTSEESS-STT-EEEEEEEEETTCEEEEEEE CS
     CusF_Ec  27 aMtMdFkvadpallaglkaGdkVrFefekrdggeyvitki 66 
                  Mt +Fk++d   l +lk GdkV+ e+e  dgg++ + k+
  KKY22819.1 303 NMTKEFKLKDLTSL-DLKDGDKVEAEVEGIDGGKVLLIKM 341
                 7********99888.8***************998877765 PP

>> PRR18  Proline-rich protein family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.8   0.00012      0.21       5      80 ..      10      86 ..       7     237 .. 0.86
   2 ?    1.0   0.0      0.18   3.2e+02     156     232 ..     260     336 ..     256     354 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
       PRR18  5 kkrrppersevllssswpsatlkrpparr.Gpalgrtqpqppasprvspqaspgrartpatcttprlaasgespaag 80
                +krr  ++s   ls+ + s  +kr+p+++ G + ++   q + sp+v+  +  +  + ++   +p+++++   p ++
  KKY22819.1 10 RKRRRVDNSASTLSKPFKSPLIKRQPIKQtGVSDQHLPTQASESPNVQYATISTSQESSTISHVPKPVSCPIYPQSS 86
                6889999*********************966666666678899999999999999999999999**99998887743 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.18
       PRR18 156 glrrggatsvpdatp.aaglgsra.rrasllpgglqapessprsgslrsllkvsllnerhkyddveyeeeaealdeGlv 232
                  +rrg+++ ++ a   ++g++    +r  l +   qa+++  +s+++   +k+  l      d  + e e+e +d G v
  KKY22819.1 260 NQRRGVTMGCAIAYDeIGGMSISVeKR--LRSLLNQASQTFSTSSNMTKEFKLKDLTSLDLKDGDKVEAEVEGIDGGKV 336
                 589999999987765145555333244..44445799999999***********9*99999999999********9966 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.58     1e+03       1      19 [.     436     454 ..     436     475 .. 0.75
   2 ?   -1.0   0.0      0.86   1.5e+03     115     154 ..     498     535 ..     488     537 .. 0.80
   3 ?    7.8   0.0    0.0016       2.9      95     154 ..     612     672 ..     598     674 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.58
  NAD_binding_9   1 aivGaGprGlavlerLlar 19 
                    +ivG+G  +  ++erL   
     KKY22819.1 436 VIVGGGSGTFGAFERLRTL 454
                    79*************9776 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.86
  NAD_binding_9 115 vtvevhraevvdleeradgqavlladgaslaadaVvLAlG 154
                      ++++ ++v+ ++ +++   v+ ++g+++++ +++LA G
     KKY22819.1 498 AAIDIVPETVTTVDFSKKI--VTGKSGKTYDYTSLILAPG 535
                    5677888888888887664..7889*************98 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0016
  NAD_binding_9  95 lyGrYlrdlfeellarlpegvtvevhraevvdleeradgq.avlladgaslaadaVvLAlG 154
                    ++G+ + ++f++ll++   +++++   ++++  + + +++  v l+dg++l+ad V+L +G
     KKY22819.1 612 VMGEKVGSIFQKLLEKSGVKFRMDASVDDATPSSSDSSKVgGVKLKDGTTLEADLVILGVG 672
                    666667788999999998888888888888888888887768****************999 PP

>> Mei5  Double-strand recombination repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   4.3e-05     0.078     120     177 ..     108     165 ..       2     176 .. 0.66
   2 ?    6.3   2.2    0.0043       7.6     152     206 .]     203     257 ..     192     257 .. 0.75
   3 ?   -1.6   0.5       1.1     2e+03      23      51 ..     283     311 ..     280     319 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.3e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH CS
        Mei5 120 eLeeekakLekqvrekeelLrrLklvkkyeskndlseLqllikkwrnasqklleeLqk 177
                  L+++   L       + +L +++ + k+    +++eLq l+ +wr+ s +++ee + 
  KKY22819.1 108 TLQKQHSALLLRLSKLKQQLDTAEQALKVTESKQDKELQALVTRWRETSREAAEEVFR 165
                 34444444444455577788888888888888999******************99875 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0043
                 --HHHHHHHHHHHHHHHHHHHHHHHHHHH..SSTTT---HHHHHHHTT--TTTS-EE CS
        Mei5 152 ndlseLqllikkwrnasqklleeLqkala..esenkeltlteLidryglddkLlhyn 206
                 ++ +  q+ i+k + a +++ + L+      e+e++ +++ ++++++ +++ ++ y+
  KKY22819.1 203 EQQQ--QIEIQKEEMAEDAEKYGLNDREEelEDEDETFSMDMMLKSMNIEVDIIGYD 257
                 3333..578888888888888888654333344899*****************9986 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.1
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        Mei5  23 lsktlkerLkktrssfnsdtnvvkrlkve 51 
                 ++k l++ L+++ + f  + n+ k+ k++
  KKY22819.1 283 VEKRLRSLLNQASQTFSTSSNMTKEFKLK 311
                 67889999999999999999999999987 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.5      0.55   9.8e+02      23      67 ..     104     148 ..      99     171 .. 0.77
   2 ?    9.1   0.1   0.00061       1.1       1      56 [.     575     631 ..     575     663 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.55
                 -EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCE CS
     3HCDH_N  23 leVvlvdiseealekalekieksleklvekgklkeeeveaalari 67 
                  +V  ++ +++al   l+k++++l+ ++++ k++e++ ++ l+ +
  KKY22819.1 104 ATVITLQKQHSALLLRLSKLKQQLDTAEQALKVTESKQDKELQAL 148
                 667777888888888889999999999999999988888877765 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00061
                 EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHH.HHHHHHHHCCTTTTSS- CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagleVvlvdiseealekal.ekieksleklvekgklk 56 
                 k+ v+G+  +G ++ +++a ++++V+++ +++  le+++ ek+ + ++kl ek  +k
  KKY22819.1 575 KIVVVGSSFIGMEVGNALAGKKHDVTIIGMERTPLERVMgEKVGSIFQKLLEKSGVK 631
                 689*********************************988356777888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (849 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1552  (0.0865637); expected 358.6 (0.02)
Passed bias filter:                      835  (0.0465726); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.51
# Mc/sec: 5005.39
//
Query:       KKY22820.1  [L=1267]
Description: hypothetical protein UCRPC4_g03146 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1297  (0.0723409); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.12u 0.34s 00:00:01.46 Elapsed: 00:00:00.54
# Mc/sec: 7052.38
//
Query:       KKY22821.1  [L=765]
Description: putative sda1 domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-98  328.8  37.2    4.8e-98  328.8  37.2    2.1  2  SDA1            SDA1
    1.1e-21   76.9   0.1    5.1e-21   74.7   0.0    2.2  2  NUC130_3NT      NUC130/3NT domain
  ------ inclusion threshold ------
        0.2   11.2   3.7       0.38   10.3   0.1    2.7  2  DUF3730         Protein of unknown function (DUF3730)
        2.4    8.0   7.5        2.5    8.0   4.7    2.6  2  Chordopox_A30L  Chordopoxvirus A30L protein


Domain annotation for each model (and alignments):
>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   1.0     0.033   1.5e+02     252     285 ..     246     283 ..     204     301 .. 0.48
   2 !  328.8  37.2  1.1e-101   4.8e-98       1     348 []     423     758 ..     423     758 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.033
        SDA1 252 ksedlvtasdiegla...kk.rkatkeerlasvkegre 285
                  ++d v+ +++ + +   kk +ka+k+   a +  +r+
  KKY22821.1 246 GDDDGVDIAKLRHQIginKKsKKASKQLEKAAATVKRK 283
                 12222222222211111011111111111111111111 PP

  == domain 2  score: 328.8 bits;  conditional E-value: 1.1e-101
        SDA1   1 mnedLLqDLveYkkskdKgVmmAArsLisLyRevnPelLkkkdrGkpaemelrs.ekkakkfGeeevaegieGleLlekwkeeekkekre......... 89 
                 mn++LL+DLv Y+ksk+KgVmmAA++L+sL+Rev Pe+L+++drGk+a+m+l+s ++k+++fGee+ +  ieGleLle+wke+ek++kr+         
  KKY22821.1 423 MNKTLLEDLVRYRKSKNKGVMMAAKGLLSLFREVDPEMLQRRDRGKDASMGLKSsGIKQQRFGEEASG-TIEGLELLEQWKEQEKQRKRAekglpadvg 520
                 9***************************************************99************99.9*******************9********* PP

        SDA1  90 ..eeeedsddeddeedwevesdddseedseggwidvesdeeeieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeekekkkkkakeas 186
                   ee+e++d+e  ++ w+ve+ dds  d++ggwi+v++d+e i++sd sed+e     + +k++k++e+++      ++e+ ++            e+ 
  KKY22821.1 521 ddEEDEEEDEEAAWAAWNVED-DDS--DDSGGWINVSDDDEPINISD-SEDDE-----PPAKKSKTDEAKDG-----DKEDGDAI-----------EKD 594
                 987777789999********9.455..455*****************.66666.....34444444443333.....12222211...........112 PP

        SDA1 187 eeekkkekeeekiskaselattrILTpaDFaklkelraeaavkkqlesakrkkkkkkdeeeeeaeksedlvtasdieglak..krkatkeerlasvkeg 283
                 ++  +++++  +is+   lattrILTpaD+akl+elr+ea+v+  l  +kr +++k++++++ a++ +d +ta++iegla     k+t+ee+la+  e 
  KKY22821.1 595 RKGLNANDPLRSISN---LATTRILTPADLAKLQELRTEASVTALLPGSKRTQRSKDQSTSHYARHIDDPLTAAEIEGLAAlsAGKKTREEKLAQLAES 690
                 334555566666666...************************************9999999*******************77569************** PP

        SDA1 284 redrekfgskka...kkkekelksttNkeKarkKnfqMtkhkvkskkkrslrekqkalrahlerqkkg 348
                 ++dr++++sk+a   ++k++e+ksttNkeKarkKnf+Mt++k+k+k krsl+e++k l+ah++r+kkg
  KKY22821.1 691 KTDRSEHKSKAAkkqERKQAEGKSTTNKEKARKKNFLMTLGKAKKKGKRSLVEHRKILKAHQDRSKKG 758
                 ***********999999*************************************************96 PP

>> NUC130_3NT  NUC130/3NT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.0   1.1e-24   5.1e-21       1      52 []      69     120 ..      69     120 .. 0.99
   2 ?   -1.7   0.0      0.87   3.9e+03       8      24 ..     129     145 ..     127     149 .. 0.88

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 1.1e-24
  NUC130_3NT   1 FlaqvahcYpketkefpqeLselLlehhsvLhpdlRkklvqaLvlLRnKdiI 52 
                 F+a+va cY + tkefp++L+ +++++h++L+p+lR+k+v++LvlL++K+iI
  KKY22821.1  69 FIAHVAECYRDITKEFPNQLIGIITQYHTTLEPELREKIVGSLVLLKKKEII 120
                 9*************************************************98 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.87
  NUC130_3NT   8 cYpketkefpqeLselL 24 
                 ++p  t++ +++L  lL
  KKY22821.1 129 FFPILTATTSKDLRALL 145
                 79***********9999 PP

>> DUF3730  Protein of unknown function (DUF3730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   8.5e-05      0.38      83     206 ..      54     174 ..      38     196 .. 0.65
   2 ?   -0.5   1.2      0.17   7.7e+02      75     123 ..     384     429 ..     316     446 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 8.5e-05
     DUF3730  83 lskssssafardlieslaslAaslrdickhrPdqngedLvdaysavLvetesqvseaqalglelleaLcsaevvdlakawkviqkklgley....rpev 177
                 + ++s ++++rdli+ +a +A + rdi+k++P q    ++ +y  +L      ++e +   + +l  L + e++d +  ++   + l+  +    r+++
  KKY22821.1  54 SATDSGIVSFRDLIDFIAHVAECYRDITKEFPNQ-LIGIITQYHTTL------EPELREKIVGSLVLLKKKEIIDSTFLLQTFFPILTATTskdlRALL 145
                 78999*****************************.555555555555......4455555555555555666666544444333333333333337777 PP

     DUF3730 178 lkvllslfailaqleveheqlselkllii 206
                  + +ls ++   + +++h+  +++++ ++
  KKY22821.1 146 FQKILSDLRSANAKTTNHKLNKTIQTVLF 174
                 77777777766655555554444444444 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.17
     DUF3730  75 LrpfllfslskssssafardlieslaslAaslrdickhrPdqngedLvd 123
                 L+p++    +  ++++++++  e+  +   ++r+ic ++P +  + L+ 
  KKY22821.1 384 LEPLIT---KIANEFVSEASAAEVASAGLNAIREICVRQPLAMNKTLLE 429
                 333333...2233333333333333333334777777777776666655 PP

>> Chordopox_A30L  Chordopoxvirus A30L protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.7   0.00055       2.5      44      68 ..     260     285 ..     257     287 .. 0.76
   2 ?   -3.6   0.0       2.4   1.1e+04      25      35 ..     405     415 ..     387     417 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00055
  Chordopox_A30L  44 leinKKsKKnsraie.slnyvskREn 68 
                     + inKKsKK s++ e     v+++E+
      KKY22821.1 260 IGINKKSKKASKQLEkAAATVKRKEK 285
                     579************44455666665 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.4
  Chordopox_A30L  25 faatlsvikEl 35 
                      +a l +i+E+
      KKY22821.1 405 ASAGLNAIREI 415
                     46789999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2044  (0.114005); expected 358.6 (0.02)
Passed bias filter:                      610  (0.0340231); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.49
# Mc/sec: 4649.00
//
Query:       KKY22822.1  [L=333]
Description: putative calcium calmodulin dependent protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-22   80.7   0.0      2e-22   79.8   0.0    1.4  1  Pkinase         Protein kinase domain
    3.2e-06   26.6   0.0    1.7e-05   24.3   0.0    1.9  2  Pkinase_Tyr     Protein tyrosine kinase
     0.0016   17.3   0.0     0.0024   16.7   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.059   12.7   0.0        0.1   11.9   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0   4.4e-26     2e-22      70     264 .]      91     330 ..      43     330 .. 0.78

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 4.4e-26
                 SSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTE.......EEE-SGTTSEESSSSCS.BCTTTS CS
     Pkinase  70 kdelylvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekge.......lKitDFGlakelesssk.ltsfvg 159
                 ++e ++++ y++++ l  l++  ++l+ +++k+i+k  l+gl+ +H+k i+H D+ p+NiLi+  +g         ++tD+  +++     +    + g
  KKY22822.1  91 PNESIFIFRYLKEN-LLGLVQ--KNLPISTTKRILKDALRGLAVMHDKDIVHNDIEPNNILIEaAEGPhgivverTQLTDLEDSAHCPPPGNlIGAQLG 186
                 45566788999855.778886..5799999*********************************543337888888*******99999999888999*** PP

                 CGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS......................... CS
     Pkinase 160 tseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei......................... 233
                    +++PE   e ++ k++D+++ +++++  lt++ +f   k++  + +el        +l+ +   +   + +                         
  KKY22822.1 187 NWMWRSPEAHAEGPMNKPSDIFAFAIVCIYALTQRVIFGVLKEELGKDEELLS-----IVLERQLSYFGDLEAFngflqylhygnpenpwieifqvvrs 280
                 ***************************************44444433333333.....22322122222222225556677888888889999****** PP

                 ...................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 ...................seeakdllkkllkkdpkkRltaeellqhpyl 264
                                    +e+++dl+ k+ + +p+kR+ta+e+l+h+++
  KKY22822.1 281 sfnaeyprepfslwqdeiiDEDFRDLIVKMANFNPEKRITAREALEHRWF 330
                 *************************************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.7e-09   1.7e-05      93     196 ..     102     215 ..      92     223 .. 0.74
   2 ?   -3.4   0.0         1   4.6e+03     228     254 ..     297     323 ..     285     326 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 3.7e-09
                  HHT....CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE........TTEEEE-STTTHEETTTSSEE....EETTSSTSGGGGS-H CS
  Pkinase_Tyr  93 rkk....ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse........nkvvkisDfGLardiekddey....vkkeeaklpvkWmap 174
                  +++     +++l ++++ ++  +  +G++ +++k++vH d+   N+L++          +  +++D   + +           +  + +  +  W +p
   KKY22822.1 102 KENllglVQKNLPISTTKRILKDALRGLAVMHDKDIVHNDIEPNNILIEAaegphgivVERTQLTDLEDSAH------CpppgNLIGAQLGNWMWRSP 193
                  44444445778999999999*****************************86664433333333444322222......223335566677889999** PP

                  HHHHHSEEEHHHHHHHHHHHHH CS
  Pkinase_Tyr 175 EslkekkftsksDvWsfGvllw 196
                  E+  e+ +++ sD+++f+++++
   KKY22822.1 194 EAHAEGPMNKPSDIFAFAIVCI 215
                  ******************9975 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1
                  TTSBHHHHHHHHHHT-SSGGGS--HHH CS
  Pkinase_Tyr 228 ekcpeelyelmkkcweedpeeRptfse 254
                  e + e++ +l+ k  + +pe+R t +e
   KKY22822.1 297 EIIDEDFRDLIVKMANFNPEKRITARE 323
                  556677888889999999999988665 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.5e-07    0.0024     312     355 ..     122     167 ..     117     180 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.5e-07
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskke...gerkglLiD 355
                     l+Da++g+  ++ ++ i+H+Di  nNili   +       ++  L D
      KKY22822.1 122 LKDALRGLAVMH-DKDIVHNDIEPNNILIEAAEGPhgiVVERTQLTD 167
                     89**********.****************944333333334444455 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.3e-05       0.1     115     167 ..     113     169 ..     102     177 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.3e-05
         Kdo 115 laeelkrallkavgrliaklhragvnHadlyaknillqqee....eeeaeiwliDld 167
                 l+ + ++++lk+  r  a +h+ ++ H d+ + nil++++e       ++  l Dl+
  KKY22822.1 113 LPISTTKRILKDALRGLAVMHDKDIVHNDIEPNNILIEAAEgphgIVVERTQLTDLE 169
                 555678888999999999********************9985443334555566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 2103.41
//
Query:       KKY22823.1  [L=215]
Description: putative 40s ribosomal protein s5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-36  125.6   2.3    1.5e-36  125.3   2.3    1.1  1  Ribosomal_S7  Ribosomal protein S7p/S5e


Domain annotation for each model (and alignments):
>> Ribosomal_S7  Ribosomal protein S7p/S5e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.3   2.3   8.6e-41   1.5e-36      14     149 .]      71     215 .]      61     215 .] 0.95

  Alignments for each domain:
  == domain 1  score: 125.3 bits;  conditional E-value: 8.6e-41
                   --SSTTSBHHHHHHHHHSB....TTBHHHHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHCS-SEEEEEEBSSSSBEEEEEEE-HHHHHHHHHHHHHH CS
  Ribosomal_S7  14 pdpkynselveklinklmk....dGkkslAekivygaldiieektkkdplevleeAlenvkPrvevksrrvGGatyqvpvevrpkRrqalAlrwiie 106
                      k++++++e+l+n+lm+    +Gkk +A +iv +a++ii+  t+++p+++ ++A+ n+ Pr++ +++   G+  +++v+v+p Rr+++A+  ++ 
    KKY22823.1  71 RFRKAQCPIIERLTNALMMngrnNGKKLMAVRIVAHAFEIIHIMTDQNPIQIAVDAIVNCGPREDSTRIGSAGTVRRQAVDVSPLRRVNQAIALLTI 167
                   4567999************99999************************************************************************9 PP

                   HH...STSSSS-HHHHHHHHHHHHHTT-..SHHHHHHHHHHHHHHHTG CS
  Ribosomal_S7 107 aa...rkrkeksmaekLaeElidAaege..gaavkkreethrmAeanr 149
                   +a   ++r+ ks+ae+LaeEli+Aa+g+  ++a+kk++e++r+A++nr
    KKY22823.1 168 GAreaAFRNVKSIAECLAEELINAAKGSsnSYAIKKKDELERVAKSNR 215
                   9988899********************9899****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1429.62
//
Query:       KKY22824.1  [L=487]
Description: putative phthalate transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-26   90.6  20.3    1.1e-25   90.4  20.3    1.0  1  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.72   10.1   3.7         38    4.6   0.1    3.0  2  DUF2530   Protein of unknown function (DUF2530)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4  20.3   1.2e-29   1.1e-25       1     352 [.      96     475 ..      96     476 .. 0.77

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 1.2e-29
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 ++la+f   l+r+++  al+  + +dlg++   +++  t++++ +++a lp   +s ++G+ r++ + +++++l + + +f s+   ++v r+l G+++
  KKY22824.1  96 VCLAFFALQLDRANIVQALSDNMLDDLGLNTNDYNTGQTIFYVSFLLAELPSQLISKKLGPERWIPVQMVMWSLIASCQAFLSGRGSFFVTRCLIGIAE 194
                 5899*****************999***************************************************444445477668************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepper.krkspkeee... 188
                 g+++p  + +++ w+++ e +r ++++ +++ + +i+g+ l+  l+ ++g      Wr++f i + ++ l ++  +++lp++p+e  +++++k  +   
  KKY22824.1 195 GGFIPDYILYLSYWYTGGELPRRLSWFWVAYEFTSIVGAFLAFGLLRLGGvngmegWRWLFAIEGTITGLIGIATYFYLPASPTETaSWFRGKHGWfne 293
                 **********************************************8888***********************98888877776541455555555766 PP

       MFS_1 189 .....................kgtgpaplvpawkallkdpvlw..........illialllfffgfsglltllplylqevlglsglllaglllallalv 256
                                      +           ++ ++++ lw          +++i+l +  + ++ ++++l+l   + lg++  + + ll   ++++
  KKY22824.1 294 reekimvnrilrddpskgdmhN-----------RQAVTPKLLWssladwemwpMYIIGLSFL-IPVQPVTAYLTLN-LKALGFG-IFATNLLTIPAYVL 378
                 6665666555544444443333...........44444445542222222113222222222.2333377777774.8888888.55555555555555 PP

       MFS_1 257 gailallagrlsdrlgrrrrlllallllllaalglallavt..ssavllllvlvliGfglgfvfpsllalasdlapp.eeagtasglfntagslggalg 352
                 ++i  l+++ +s r+    r l +l++ + ++ +l+ l +   ++++++ +++ ++ +g+  v ++  a++s++a+  + +  as+l+n++ +++ +++
  KKY22824.1 379 FIINLLFWTSVSERTDQ--RFLTGLVSQIWVFPLLLALEWMpdNTNAWVKYMFSILIVGSPYVHAINVAITSRNAGSvRLRTVASALYNMFVQASNLIS 475
                 566699********775..555555555555555555555557788888889999999*****************55599************9998876 PP

>> DUF2530  Protein of unknown function (DUF2530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1    0.0042        38       5      52 ..     148     195 ..     143     199 .. 0.76
   2 ?    4.5   1.2    0.0046        42       5      59 ..     213     270 ..     210     273 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0042
     DUF2530   5 eLprrLtdprpvivvgtllWlvalvvllvvgdaleswlpvclaGlvvG 52 
                 +L ++ + p+  i v +++W + + +  ++ ++ +  +  cl+G++ G
  KKY22824.1 148 QLISKKLGPERWIPVQMVMWSLIASCQAFLSGRGSFFVTRCLIGIAEG 195
                 45555577899999******665555555669999999******9987 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0046
     DUF2530   5 eLprrLtdprpvivvgtl.lWlvalvvl.lvvgdaleswlp.vclaGlvvGllGlaif 59 
                 eLprrL+  +++    ++   ++a+ +l l   + +e w++ +++ G ++Gl+G+a +
  KKY22824.1 213 ELPRRLSWFWVAYEFTSIvGAFLAFGLLrLGGVNGMEGWRWlFAIEGTITGLIGIATY 270
                 6888888888876554431344455444244457788899845899********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 3117.25
//
Query:       KKY22825.1  [L=1489]
Description: putative ankyrin repeat-containing [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-38  131.1   7.3    4.8e-11   43.1   0.0    5.3  6  Ank_2        Ankyrin repeats (3 copies)
    2.6e-28   98.0  13.6    7.8e-06   26.3   0.0    8.3  8  Ank_4        Ankyrin repeats (many copies)
    6.6e-28   96.4   5.3    2.9e-08   33.8   0.0    7.5  7  Ank_5        Ankyrin repeats (many copies)
    8.5e-25   84.1  10.9      0.008   16.6   0.0   10.5 11  Ank_3        Ankyrin repeat
    1.5e-18   66.3  17.9      0.002   18.5   0.0    9.9 10  Ank          Ankyrin repeat
    5.9e-13   48.8  11.3    1.4e-12   47.5  11.3    1.7  1  FYVE         FYVE zinc finger
    4.8e-07   30.2   0.0    9.8e-07   29.1   0.0    1.5  1  Patatin      Patatin-like phospholipase
    0.00014   21.8   0.0    0.00031   20.7   0.0    1.5  1  NACHT        NACHT domain
    0.00049   20.4   0.0     0.0017   18.6   0.0    1.9  1  AAA_22       AAA domain
  ------ inclusion threshold ------
      0.023   15.2   0.2        0.1   13.1   0.1    2.2  2  Sigma_M_inh  Sigma-M inhibitor


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.8   6.9e+03      12      36 ..     316     338 ..     312     373 .. 0.48
   2 !   34.9   0.1   9.6e-12   1.7e-08       1      72 [.     821     903 ..     784     912 .. 0.65
   3 !   32.8   0.4   4.4e-11   7.9e-08       4      79 ..     947    1034 ..     943    1038 .. 0.80
   4 !   27.3   0.0   2.2e-09     4e-06      23      74 ..    1162    1218 ..    1121    1228 .. 0.80
   5 !   43.1   0.0   2.7e-14   4.8e-11       1      75 [.    1166    1255 ..    1166    1259 .. 0.82
   6 !   30.3   0.0   2.6e-10   4.6e-07      24      77 ..    1230    1291 ..    1220    1297 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.8
       Ank_2  12 lvklLlegadpnkngktaLhyAakn 36 
                 +v+ Lle ++ +  ++t+++y +++
  KKY22825.1 316 VVQMLLERSEKK--DNTVVYYYVEQ 338
                 566666333322..35777766553 PP

  == domain 2  score: 34.9 bits;  conditional E-value: 9.6e-12
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh.ad.....ndgrtpLhyAars.ghleivklL 72 
                 Lh+Aa ++++ lv++Ll + +d++  + ng+taLh+Aa+ ++  ++ lL+e+ ad      +  tpL +A+   ++  +  +L
  KKY22825.1 821 LHFAAAFDQPTLVEYLLpSVKDVDvaDyNGNTALHIAASLQDGACAALLCEAgADvlrlgMEQVTPLNMAVLRdSRVALRSML 903
                 67777776667777777644555553357777777777766666677777655333334455667777777653444444555 PP

  == domain 3  score: 32.8 bits;  conditional E-value: 4.4e-11
       Ank_2    4 AakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAars...ghleivklLlekgadi 79  
                  A++ g+ ++++lLl +g+ ++  +  g++ Lh+A+ + +l+i++ Ll        +d+ grtpLh+A+      +l i++ Ll k  +i
  KKY22825.1  947 AVSLGHAYCLDLLLeKGVSLSslNhHGWSMLHVAVAKVKLNIIEVLLTRgadvnaVDSMGRTPLHVAVILkihESLAIARALL-KMPKI 1034
                  78889999******988777655359***********999*******856565566799*********986555788888888.43455 PP

  == domain 4  score: 27.3 bits;  conditional E-value: 2.2e-09
       Ank_2   23 nkngktaLhyAakngnleivklLle.....h...adndgrtpLhyAarsghleivklLle 74  
                  +      Lh A+++g+leiv+ +l+     h    d++gr+ Lh+A+  g+ e+vkl l 
  KKY22825.1 1162 D---FELLHKAISYGDLEIVRPFLNlgsnsHlrdCDKKGRNSLHAAVIAGSREVVKLVLS 1218
                  4...578*****************96654437566699******************9983 PP

  == domain 5  score: 43.1 bits;  conditional E-value: 2.7e-14
       Ank_2    1 LhlAakngnlelvklLl.egadpn....k.ngktaLhyAakngnleivklLleh.........adndgrtpLhyAarsghleivklLlek 75  
                  Lh A+++g+le+v+ +l  g++ +    + +g++ Lh+A+++g++e+vkl l+           d++g+tpLh++a +++ ei++ L+e 
  KKY22825.1 1166 LHKAISYGDLEIVRPFLnLGSNSHlrdcDkKGRNSLHAAVIAGSREVVKLVLSTkdsaslchqSDENGQTPLHLCAVFSQVEIMQDLIEE 1255
                  89******9********85544444443259*********************944555666677799*****************999964 PP

  == domain 6  score: 30.3 bits;  conditional E-value: 2.6e-10
       Ank_2   24 k.ngktaLhyAakngnleivklLleh.......adndgrtpLhyAarsghleivklLlekga 77  
                  + ng+t+Lh++a   ++ei++ L+e+       +d++g+tp h+A+ +g++++ + L   ga
  KKY22825.1 1230 DeNGQTPLHLCAVFSQVEIMQDLIEEepgllhgTDKNGQTPFHLACIYGNEKVRESLNAAGA 1291
                  249**********9999*******95667766899***************999998865566 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   2.1e-06    0.0038      15      55 .]     800     837 ..     796     837 .. 0.84
   2 !   24.5   0.6   1.6e-08   2.9e-05       3      44 ..     819     859 ..     818     869 .. 0.89
   3 !    8.7   0.1    0.0015       2.7       2      46 ..     851     894 ..     850     904 .. 0.86
   4 !   16.2   0.4   6.7e-06     0.012       5      55 .]     944     993 ..     936     993 .. 0.86
   5 !   18.5   0.1   1.3e-06    0.0023       5      55 .]     977    1029 ..     977    1029 .. 0.91
   6 !   19.1   0.0   8.2e-07    0.0015       4      53 ..    1165    1215 ..    1164    1217 .. 0.89
   7 !   26.3   0.0   4.4e-09   7.8e-06       2      55 .]    1198    1253 ..    1197    1253 .. 0.91
   8 !    8.6   0.0    0.0015       2.8      30      49 ..    1263    1281 ..    1259    1283 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.1e-06
       Ank_4  15 elvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++ rl ++     na++++sG+ +lh+Aa + ++  +++Ll
  KKY22825.1 800 KYKRLSVD---LFNAVLSDSGWHCLHFAAAFDQPTLVEYLL 837
                 55555554...2899*************************8 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 1.6e-08
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAak 44 
                 ++Lh aa++ +  lv++Ll + +d++   + +G+talhiAa+
  KKY22825.1 819 HCLHFAAAFDQPTLVEYLLPSVKDVDVA-DYNGNTALHIAAS 859
                 69*************************7.***********97 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0015
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrg 46 
                 +taLh aa+ ++  +++lL e gad+ +    ++ t+l +A++r 
  KKY22825.1 851 NTALHIAASLQDGACAALLCEAGADVLRL-GMEQVTPLNMAVLRD 894
                 89**************************9.666779*****9886 PP

  == domain 4  score: 16.2 bits;  conditional E-value: 6.7e-06
       Ank_4   5 LhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                  + a++ g+  +++lLlekg+++    n  G++ lh A+ + +++i++ Ll
  KKY22825.1 944 AFDAVSLGHAYCLDLLLEKGVSLSSL-NHHGWSMLHVAVAKVKLNIIEVLL 993
                 45566699*****************9.************999999998886 PP

  == domain 5  score: 18.5 bits;  conditional E-value: 1.3e-06
       Ank_4    5 LhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAa...krgnveilklLl 55  
                  Lh a+++ +l +++ Ll +gad+na+ ++ G+t+lh A+    ++++ i++ Ll
  KKY22825.1  977 LHVAVAKVKLNIIEVLLTRGADVNAV-DSMGRTPLHVAVilkIHESLAIARALL 1029
                  899999999********99*******.999*********997788888888886 PP

  == domain 6  score: 19.1 bits;  conditional E-value: 8.2e-07
       Ank_4    4 aLhyaaisgrlelvrlLlekgad..inaqdnrsGetalhiAakrgnveilkl 53  
                  +Lh+a+++g+le+vr  l+ g +  +  + ++ G++ lh A+  g+ e++kl
  KKY22825.1 1165 LLHKAISYGDLEIVRPFLNLGSNshLRDC-DKKGRNSLHAAVIAGSREVVKL 1215
                  7**************99999988556666.999*****************97 PP

  == domain 7  score: 26.3 bits;  conditional E-value: 4.4e-09
       Ank_4    2 ltaLhyaaisgrlelvrlLlekg..adinaqdnrsGetalhiAakrgnveilklLl 55  
                  +  Lh+a+i+g  e+v+l l+++  a++++q++++G+t+lh +a +++vei + L+
  KKY22825.1 1198 RNSLHAAVIAGSREVVKLVLSTKdsASLCHQSDENGQTPLHLCAVFSQVEIMQDLI 1253
                  567*****************8744599************************99887 PP

  == domain 8  score: 8.6 bits;  conditional E-value: 0.0015
       Ank_4   30 qdnrsGetalhiAakrgnve 49  
                  + +++G+t++h A+  gn +
  KKY22825.1 1263 T-DKNGQTPFHLACIYGNEK 1281
                  4.89**********999975 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   3.1e-05     0.056      11      56 .]     813     857 ..     807     857 .. 0.85
   2 !   10.5   0.3   0.00034      0.61       8      42 ..     842     876 ..     840     890 .. 0.87
   3 ?    2.3   0.0      0.13   2.3e+02       3      36 ..     871     903 ..     868     910 .. 0.82
   4 !   33.8   0.0   1.6e-11   2.9e-08       1      56 []     959    1013 ..     959    1013 .. 0.95
   5 !    9.9   0.0    0.0005       0.9      18      43 ..    1164    1189 ..    1159    1193 .. 0.84
   6 !   16.0   0.0   6.2e-06     0.011      13      55 ..    1194    1239 ..    1185    1240 .. 0.92
   7 !   11.6   0.0   0.00015      0.27       1      28 [.    1252    1279 ..    1252    1279 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.1e-05
       Ank_5  11 rldgggntpLhvAakygaadvvrlLl..argadlnltdsrGltaldlA 56 
                  +d g+ ++Lh+Aa    +++v++Ll     +d   ++  G+tal++A
  KKY22825.1 813 LSDSGW-HCLHFAAAFDQPTLVEYLLpsVKDVDVADYN--GNTALHIA 857
                 667778.*******************888888888888..59999998 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00034
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLlargadl 42 
                 dv+  d +gnt+Lh+Aa+ +   ++ lL++ gad 
  KKY22825.1 842 DVDVADYNGNTALHIAASLQDGACAALLCEAGADV 876
                 67788999**********99999999999888885 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.13
       Ank_5   3 ehgpadvnrldgggntpLhvAakygaadvvrlLl 36 
                 e+g adv rl  + +tpL++A+ + +   +r +l
  KKY22825.1 871 EAG-ADVLRLGMEQVTPLNMAVLRDSRVALRSML 903
                 566.9999999999********988877777666 PP

  == domain 4  score: 33.8 bits;  conditional E-value: 1.6e-11
       Ank_5    1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56  
                  Lle+g +++  l+ +g + LhvA+ ++ ++++++Ll rgad n+ ds+G+t+l++A
  KKY22825.1  959 LLEKG-VSLSSLNHHGWSMLHVAVAKVKLNIIEVLLTRGADVNAVDSMGRTPLHVA 1013
                  78999.88888899999*************************************98 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.0005
       Ank_5   18 tpLhvAakygaadvvrlLlargadln 43  
                  + Lh A++yg +++vr +l+ g++  
  KKY22825.1 1164 ELLHKAISYGDLEIVRPFLNLGSNSH 1189
                  68**************9998887755 PP

  == domain 6  score: 16.0 bits;  conditional E-value: 6.2e-06
       Ank_5   13 dgggntpLhvAakygaadvvrlLl...argadlnltdsrGltaldl 55  
                  d++g + Lh A+ +g+ +vv+l l   +  + + + d++G+t+l+l
  KKY22825.1 1194 DKKGRNSLHAAVIAGSREVVKLVLstkDSASLCHQSDENGQTPLHL 1239
                  78899********************99999**************98 PP

  == domain 7  score: 11.6 bits;  conditional E-value: 0.00015
       Ank_5    1 LlehgpadvnrldgggntpLhvAakyga 28  
                  L+e+ p  +  +d++g+tp+h+A+ yg+
  KKY22825.1 1252 LIEEEPGLLHGTDKNGQTPFHLACIYGN 1279
                  67778888999**************996 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       4.7   8.4e+03       8      29 ..      12      33 ..      11      36 .. 0.79
   2 !   10.5   0.0   0.00042      0.76       2      28 ..     817     844 ..     816     846 .. 0.85
   3 !   13.0   0.1   6.9e-05      0.12       1      29 [.     849     876 ..     849     878 .. 0.85
   4 ?   -0.8   0.0       2.1   3.7e+03       3      23 ..     884     904 ..     882     911 .. 0.71
   5 ?   -2.8   0.0       9.1   1.6e+04      16      29 ..     955     966 ..     947     967 .. 0.69
   6 !   16.6   0.0   4.5e-06     0.008       1      31 []     972    1001 ..     972    1001 .. 0.97
   7 !    6.6   0.0    0.0082        15       2      23 ..    1006    1030 ..    1005    1036 .. 0.80
   8 ?    3.5   0.0     0.083   1.5e+02       5      19 ..    1165    1179 ..    1163    1189 .. 0.84
   9 !    6.3   0.0      0.01        18       2      23 ..    1197    1218 ..    1196    1223 .. 0.89
  10 !   10.2   0.0   0.00055      0.99       1      23 [.    1232    1254 ..    1232    1260 .. 0.92
  11 !   12.3   0.0   0.00012      0.21       1      18 [.    1266    1282 ..    1266    1290 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.7
       Ank_3  8 lAarsgnlei.vkfLlenkgadv 29
                +A++ g+le+ ++ +++   +++
  KKY22825.1 12 IAIMLGKLEMtIDECIN-AYINL 33
                69999***966999999.56655 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00042
       Ank_3   2 GetpLhlAarsgnleivkfLle.nkgad 28 
                 G+  Lh+Aa ++ +++v++Ll   k +d
  KKY22825.1 817 GWHCLHFAAAFDQPTLVEYLLPsVKDVD 844
                 899******************8554555 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 6.9e-05
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 nG+t+Lh+Aa+ ++ + + +L+e  gadv
  KKY22825.1 849 NGNTALHIAASLQDGACAALLCE-AGADV 876
                 7**************95666666.9*998 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 2.1
       Ank_3   3 etpLhlAarsgnleivkfLle 23 
                  tpL +A++ ++   ++ +l 
  KKY22825.1 884 VTPLNMAVLRDSRVALRSMLL 904
                 59******9999865665554 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 9.1
       Ank_3  16 eivkfLlenkgadv 29 
                 + +++Lle kg+ +
  KKY22825.1 955 C-LDLLLE-KGVSL 966
                 4.999***.89875 PP

  == domain 6  score: 16.6 bits;  conditional E-value: 4.5e-06
       Ank_3    1 nGetpLhlAarsgnleivkfLlenkgadvna 31  
                  +G+++Lh+A+   +l+i++ Ll  +gadvna
  KKY22825.1  972 HGWSMLHVAVAKVKLNIIEVLLT-RGADVNA 1001
                  79*********************.*****96 PP

  == domain 7  score: 6.6 bits;  conditional E-value: 0.0082
       Ank_3    2 GetpLhlAarsgnle...ivkfLle 23  
                  G+tpLh+A+    +e   i+++Ll+
  KKY22825.1 1006 GRTPLHVAVILKIHEslaIARALLK 1030
                  9*****9999888865557888887 PP

  == domain 8  score: 3.5 bits;  conditional E-value: 0.083
       Ank_3    5 pLhlAarsgnleivk 19  
                  +Lh A+++g+leiv+
  KKY22825.1 1165 LLHKAISYGDLEIVR 1179
                  7***********998 PP

  == domain 9  score: 6.3 bits;  conditional E-value: 0.01
       Ank_3    2 GetpLhlAarsgnleivkfLle 23  
                  G++ Lh A+ +g+ e+vk+ l 
  KKY22825.1 1197 GRNSLHAAVIAGSREVVKLVLS 1218
                  999************9998776 PP

  == domain 10  score: 10.2 bits;  conditional E-value: 0.00055
       Ank_3    1 nGetpLhlAarsgnleivkfLle 23  
                  nG+tpLhl+a +  +ei++ L+e
  KKY22825.1 1232 NGQTPLHLCAVFSQVEIMQDLIE 1254
                  7********************99 PP

  == domain 11  score: 12.3 bits;  conditional E-value: 0.00012
       Ank_3    1 nGetpLhlAarsgnleiv 18  
                  nG+tp+hlA+ +gn + v
  KKY22825.1 1266 NGQTPFHLACIYGNEK-V 1282
                  7************987.4 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0        10   1.8e+04      11      24 ..       5      17 ..       2      21 .. 0.73
   2 ?    2.1   0.0      0.17     3e+02       2      23 ..     817     839 ..     816     847 .. 0.79
   3 !   14.1   0.6   2.8e-05      0.05       1      27 [.     849     876 ..     849     879 .. 0.74
   4 ?    1.2   0.2      0.32   5.8e+02       9      31 ..     947     970 ..     928     972 .. 0.80
   5 !   18.5   0.0   1.1e-06     0.002       1      31 [.     972    1003 ..     972    1004 .. 0.84
   6 !    8.3   0.1    0.0019       3.3       1      22 [.    1005    1029 ..    1005    1037 .. 0.74
   7 ?    2.0   0.1      0.18   3.2e+02       6      31 ..    1166    1192 ..    1165    1193 .. 0.83
   8 ?    2.3   0.0      0.15   2.6e+02       6      30 ..    1201    1228 ..    1196    1230 .. 0.73
   9 !   12.0   0.0   0.00013      0.23       1      22 [.    1232    1253 ..    1232    1264 .. 0.79
  10 !    7.6   0.0    0.0032       5.7       1      15 [.    1266    1280 ..    1266    1287 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 10
                HHTTHHHHHHHHTT CS
         Ank 11 tngkkriiklLLhG 24
                + +k+rii   L G
  KKY22825.1  5 RSNKPRIIAIML-G 17
                667899998777.4 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.17
                 SBBHHHHHHHHTTHHHHHHHH.T CS
         Ank   2 GnTPLHlAatngkkriiklLL.h 23 
                 G+ +LH Aa ++++  +++LL +
  KKY22825.1 817 GWHCLHFAAAFDQPTLVEYLLpS 839
                 7889**999899999***99954 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 2.8e-05
                 TSBBHHHHHH...HHTTHHHHHHHH.TTTST CS
         Ank   1 dGnTPLHlAa...tngkkriiklLL.hGAnl 27 
                 +GnT+LH+Aa    ++   ++ lL   GA++
  KKY22825.1 849 NGNTALHIAAslqDGA---CAALLCeAGADV 876
                 8********9885544...555555669997 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.32
                 HHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   9 AatngkkriiklLL.hGAnlnald 31 
                 A++ g++ ++ lLL +G +l +l+
  KKY22825.1 947 AVSLGHAYCLDLLLeKGVSLSSLN 970
                 558899********9896665544 PP

  == domain 5  score: 18.5 bits;  conditional E-value: 1.1e-06
                  TSBBHHHHHH...HHTTHHHHHHHH.TTTSTTCBT CS
         Ank    1 dGnTPLHlAa...tngkkriiklLL.hGAnlnald 31  
                  +G++ LH+A+       ++ii+ LL +GA++na+d
  KKY22825.1  972 HGWSMLHVAVakvK---LNIIEVLLtRGADVNAVD 1003
                  59999****94443...66******88*******9 PP

  == domain 6  score: 8.3 bits;  conditional E-value: 0.0019
                  TSBBHHHHHH......HHTTHHHHHHHH CS
         Ank    1 dGnTPLHlAa......tngkkriiklLL 22  
                  +G+TPLH+A+      +   + i+++LL
  KKY22825.1 1005 MGRTPLHVAVilkiheS---LAIARALL 1029
                  69******987775443...33777776 PP

  == domain 7  score: 2.0 bits;  conditional E-value: 0.18
                  HHHHHHHTTHHHHHHHHT.TTSTTCBT CS
         Ank    6 LHlAatngkkriiklLLh.GAnlnald 31  
                  LH A+++g+++i++ +L+ G+n +++d
  KKY22825.1 1166 LHKAISYGDLEIVRPFLNlGSNSHLRD 1192
                  9*9***********9984488877766 PP

  == domain 8  score: 2.3 bits;  conditional E-value: 0.15
                  HHHHHHHTTHHHHHHHH...TTTSTTCB CS
         Ank    6 LHlAatngkkriiklLL...hGAnlnal 30  
                  LH A+  g+ +++kl L   ++A+l  +
  KKY22825.1 1201 LHAAVIAGSREVVKLVLstkDSASLCHQ 1228
                  9***9788888***87775336888665 PP

  == domain 9  score: 12.0 bits;  conditional E-value: 0.00013
                  TSBBHHHHHHHHTTHHHHHHHH CS
         Ank    1 dGnTPLHlAatngkkriiklLL 22  
                  +G TPLHl+a + +++i ++L+
  KKY22825.1 1232 NGQTPLHLCAVFSQVEIMQDLI 1253
                  7******999888888999996 PP

  == domain 10  score: 7.6 bits;  conditional E-value: 0.0032
                  TSBBHHHHHHHHTTH CS
         Ank    1 dGnTPLHlAatngkk 15  
                  +G TP HlA+ +g++
  KKY22825.1 1266 NGQTPFHLACIYGNE 1280
                  7*********88874 PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5  11.3     8e-16   1.4e-12       2      67 ..    1419    1483 ..    1418    1484 .. 0.93

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 8e-16
                  ---...--SB-TTT--B--SSS--EE-TTT--EE-STTS-EEE.EEGGGTEEEEEEE-HHHHHHHH CS
        FYVE    2 kwkddsevkkCeiCakkFsllrrrhhCrlCGkvvCekCssklvallekeaeeksvrvCkeClaels 67  
                  +w++d  +++C  C+k+F++lrr+hhCrlCG ++ ++C++    +   e++++ +r+Ck+C + ++
  KKY22825.1 1419 YWMKDICASSCFCCNKPFTMLRRKHHCRLCGVIFDTACMTYIDGSH-FESTTATIRICKACASVVE 1483
                  7**************************************9988665.99999*********98875 PP

>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   5.5e-10   9.8e-07      50     203 ..      19     164 ..      11     165 .. 0.71

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 5.5e-10
     Patatin  50 paalvddlrnlllnkifdrdllirelaanlaarlsgllgkgglfdaealrellrkvladktlkrlsarlgklpllkslftanqavpaittataatasta 148
                  +++ d+++n+ +n+++d++      ++   +  + + + ++ fd  al++ +++ ++++++++     +    +k+     + v+ +tt+t   +  +
  KKY22825.1  19 LEMTIDECINAYINLSADVF------KKVHRFPVTVTGNVHARFDSAALERQIKASIKAQGFSEDELLKSEEGKCKV-----FVVATNTTITKPVCL-T 105
                 46666777777777777777......566667777777778888888888888866666666666666666644432.....444444555555554.4 PP

     Patatin 149 nranglytedddddvdladavraSsafPglfppvsl....dgelyvDGGilsNvPilaa 203
                  +++ +  +d+ + v++++a++a+sa+  +f+p ++    ++e yvDG+   N+Pi ++
  KKY22825.1 106 SYETKRTDADRLNHVKIWQAALATSAASTFFDPLTIsmgaYDEVYVDGATGANNPIYQV 164
                 5566677889999***********************9998889************9776 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.7e-07   0.00031      10     148 ..     306     468 ..     300     485 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.7e-07
                 TTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEE........................ CS
       NACHT  10 GsGKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlpepaapvsevwavllelperlL........................ 84 
                 GsGKT+L+  +++ + e+  ++++  + ++++++     +++  l+ ++++ l++p +  +   + ll+  erl                         
  KKY22825.1 306 GSGKTMLATLVVQMLLERSEKKDNTVVYYYVEQAGPHNLTATAVLRSFIRQLLLDPRSVARYRSTPLLSKIERLFryeqstihdielldifdfmvkdip 404
                 9******************999985666666666666666669**************999995555666666666666666677777777777777777 PP

                 ...EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHH.HCTTSSCE..EEEE CS
       NACHT  85 ...lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrd.leeqleeaivleve 148
                    +++Dgl e+ +    +e+++v +   + +++ + p+ ++ +  r++     l++ l ++ ++e++
  KKY22825.1 405 eiaIVIDGLHEMTR----EEARRVCDFVDHFLSQIHGPTMRIAIFNRSQIGDLvLKRRLPTPWHIELN 468
                 777**********9....67789999999999998889999999888888744788888888555554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   9.4e-07    0.0017      14     111 ..     305     423 ..     301     439 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 9.4e-07
      AAA_22  14 sGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst....sskdllrellralglelka.erlsseellealeqalrarav................ 91 
                 +G+GKT+l+  +++ l e+++  +++ +vv++++ + +    + + +lr + r+l l+  + +r +s  ll+++e+ +r  +                 
  KKY22825.1 305 VGSGKTMLATLVVQMLLERSE--KKDNTVVYYYVEQAGphnlTATAVLRSFIRQLLLDPRSvARYRSTPLLSKIERLFRYEQStihdielldifdfmvk 401
                 7***************87644..4667777777777776799999999999999999999999999999999999999888877777777777778777 PP

      AAA_22  92 ...ielliiDEaqhlrseealee 111
                      +++iD  + + + e  + 
  KKY22825.1 402 dipEIAIVIDGLHEM-TREEARR 423
                 777777888888877.5555554 PP

>> Sigma_M_inh  Sigma-M inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   5.6e-05       0.1       9      65 ..     941     998 ..     936    1028 .. 0.83
   2 ?   -2.5   0.0       3.9     7e+03      16      48 ..    1022    1054 ..    1010    1056 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.6e-05
  Sigma_M_inh   9 ehnvfgwvsvgta.vlsllllnlailsdviaysykmlpfamaavplgvvelfikkgrt 65 
                  ++  f  vs+g a  l lll +   ls    + + ml +a+a v l ++e+++ +g  
   KKY22825.1 941 DKAAFDAVSLGHAyCLDLLLEKGVSLSSLNHHGWSMLHVAVAKVKLNIIEVLLTRGAD 998
                  5678999****993577777777889****************************9965 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.9
  Sigma_M_inh   16 vsvgtavlsllllnlailsdviaysykmlpfam 48  
                   +++  a+l +  +n ai+ + ++ +y  l fa+
   KKY22825.1 1022 LAIARALLKMPKINTAIVLKRMLPTYSPLGFAL 1054
                   567889999999999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.01u 0.38s 00:00:01.39 Elapsed: 00:00:00.54
# Mc/sec: 8338.06
//
Query:       KKY22826.1  [L=469]
Description: putative phospho-2-dehydro-3-deoxyheptonate aldolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2971.05
//
Query:       KKY22827.1  [L=507]
Description: putative mfs transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-37  127.3  29.8    5.3e-36  124.3  30.6    1.8  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.066   13.2   4.3        2.1    8.4   0.0    3.5  3  TM_helix  Conserved TM helix


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3  30.6   5.9e-40   5.3e-36       1     351 [.      50     419 ..      50     421 .. 0.85
   2 ?   -0.3   0.0     0.043   3.9e+02     150     178 ..     432     460 ..     428     487 .. 0.62

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 5.9e-40
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllll.fasslwlllvlrvlqGl 97 
                 ++l++++++++r+++++a  + l +dl++ +s+++ +l++ ++g++++++p   + + +Gr + ++ + +++++l +++ + + s++  ++++r++ Gl
  KKY22827.1  50 VILVYLMNYIDRNNYAAAKLQGLVSDLNLHGSQYQAALSILFVGYILGQIPSNLFLNYCGRPSlYIGFWVVAWGLVSCVTSqV-SNYGGIFACRFILGL 147
                 5799***************99******************************************999999999****5555544.8888*********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailg.pllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee. 188
                  ++ +f++++ ++++w++++e ++ ++++++g+ l+ ++g  +++g+l  ++g      W+++++i ++++++ +v+  ++++ ++ +  +k+  +e  
  KKY22827.1 148 VEAPFFAGVLFYLSKWYTRTELALRMSIFYSGSLLSGAFGnLIAAGILNGLAGerglaaWQWLYIIEGAITMFIGVV--VVFVLPDFPDTWKALSPEFk 244
                 ****************************************5555556668888***********************7..55555555555555545544 PP

       MFS_1 189 .................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr 270
                                  +  +  +++  +k+  +dp  + ll++++l+ +g +g+  ++p+ l e+lg++  ++++ll+a ++++++i +++    sdr
  KKY22827.1 245 hvanrrlaleaaeadvdEEGAMPQWKG-FKLAMTDPKTY-LLAVAYLGQTGAAGFQNFFPS-LTETLGYN-QIISLLLVAPPYIFMVIYSMCHNLASDR 339
                 677766666677755555555555555.********997.9999999999***********.5*******.899999************99999999** PP

       MFS_1 271 lgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdla..ppeeagtasglfntagslggal 351
                  g+ r++++++++ ++++ +++++a+   ++   ++++++ ++++ +++++  ++s+ +  pp ++++a++++n +g+ +++ 
  KKY22827.1 340 AGN-RFWFFIYPIPIVIVGCVIFMATD--SFGPRYFSLFLMIFVFAMNGTIYGWISNAIprPPAKRAAAYAFINGIGNSASIW 419
                 996.9**********************..444445555555566667899999999999777799999999999999988876 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.043
       MFS_1 150 Wravfyilaivsllafvlfllllpeeppe 178
                 +r++  i+ +++++af+ +l+l + ++++
  KKY22827.1 432 YRLALGIVIGLLVIAFLAALILRLYTQKQ 460
                 55666666666666666544444444444 PP

>> TM_helix  Conserved TM helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00023       2.1      19      37 ..      85     103 ..      85     108 .. 0.88
   2 ?   -0.6   0.2      0.15   1.4e+03      12      23 ..     184     195 ..     180     198 .. 0.81
   3 ?    4.0   0.1    0.0056        50      25      45 ..     439     467 ..     435     471 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00023
                 HHHHHHHHHHHHHHHHHHH CS
    TM_helix  19 gAilILlvGwiiAkfvsrl 37 
                 +A+ IL+vG+i++++ s+l
  KKY22827.1  85 AALSILFVGYILGQIPSNL 103
                 6899*********998887 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.15
                 TTHSHHHHHHHH CS
    TM_helix  12 sflPnLvgAilI 23 
                 ++ +nL++A ++
  KKY22827.1 184 GAFGNLIAAGIL 195
                 7789*****985 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.0056
                 HHHHHHHHHHHHHH........HHHHHHH CS
    TM_helix  25 lvGwiiAkfvsrlv........tkllakt 45 
                 ++G++++ f++ l+        +++la++
  KKY22827.1 439 VIGLLVIAFLAALIlrlytqkqNRMLARM 467
                 78888888888888777778888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       972  (0.0542138); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3745.36
//
Query:       KKY22828.1  [L=372]
Description: putative ca2+-modulated nonselective cation channel polycystin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   15.4   2.9      0.042   13.7   2.9    1.9  1  PAN_4       PAN domain


Domain annotation for each model (and alignments):
>> PAN_4  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.9   2.4e-06     0.042       6      33 ..     276     303 ..     270     315 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.4e-06
       PAN_4   6 ndlangevladspeaCcaaCaadsnCna 33 
                 n+++ g    d+p+ Cc++C++ ++C+a
  KKY22828.1 276 NVYTGGAEAGDNPSLCCQLCEESEGCAA 303
                 566666556699**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 2254.12
//
Query:       KKY22829.1  [L=873]
Description: putative membrane bound cation [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-37  128.7  41.1    1.3e-20   73.9  19.1    2.1  2  Na_Ca_ex  Sodium/calcium exchanger protein


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9  14.0   7.3e-21   1.3e-16       4     150 ..     218     374 ..     215     375 .. 0.94
   2 !   73.9  19.1     7e-25   1.3e-20       2     150 ..     709     852 ..     708     853 .. 0.89

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 7.3e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCHH CS
    Na_Ca_ex   4 vlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslkld 102
                 v+f++  ++i++la +l+ ++e++a      g ++G +++ +++++ Eli+ iia++ +e++++ +++lGs++ nlll++G+++l+g+  + +e+l ++
  KKY22829.1 218 VIFAINAVAIIPLAGLLSFATESVA---SKLGDTIGALMNVTFGNAVELIIFIIALVAKEIRIVQASLLGSILSNLLLILGMSFLFGG-LRFREQL-YN 311
                 799999*******************...78889*******************************************************.6666663.66 PP

                 HHHHHHHHHHHHHHHHHTCHHHHH...............HTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 103 lgllllvallllllvlllllplfv...............pgrltvleglvllllYalylvlsl 150
                   + ++ a+ll+l+v+ lllp+++                 +l++ ++++lll+Y++yl+++l
  KKY22829.1 312 PTVGQMSACLLSLSVISLLLPTAFhfsfndasqtqadraVVKLSRGTSVILLLVYVIYLLFQL 374
                 6689999***************99***************9*********************98 PP

  == domain 2  score: 73.9 bits;  conditional E-value: 7e-25
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECC CS
    Na_Ca_ex   2 lfvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslk 100
                 ++vl+++s+ l++++a+flv+s+++++++ gis++++Gl++l+ ++++ E+++++++a ++++dlaig +lGs i++  +v ++i+l+g+  +   s  
  KKY22829.1 709 AIVLLVISTGLVAACAEFLVDSIDYLVETSGISQAFIGLIILPMVGNAAEHVTAVTVASKNKMDLAIGVALGSSIQIAIFVTPIIVLLGWCLNTDMS-- 805
                 5899**************************************************************************************7666655.. PP

                 HHHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 101 ldlgllllvallllllvlllllplfvpgrltvleglvllllYalylvlsl 150
                 l ++l+ +v+l+++++++ +l++    gr ++leg++l++ Y++++v ++
  KKY22829.1 806 LYFSLFETVSLFASAFIVNYLMID---GRSNYLEGALLIASYVIIAVAAY 852
                 455557777777766666555444...******************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (873 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1470  (0.0819901); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 5882.44
//
Query:       KKY22848.1  [L=440]
Description: putative gtp-binding protein obg [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-23   80.6   0.0    1.4e-22   79.9   0.0    1.4  1  MMR_HSR1   50S ribosome-binding GTPase
    4.8e-19   68.5   0.1    1.9e-08   34.0   0.1    2.2  2  GTP1_OBG   GTP1/OBG
    2.8e-09   36.7   0.1    1.1e-08   34.8   0.0    2.0  2  FeoB_N     Ferrous iron transport protein B
  ------ inclusion threshold ------
      0.054   14.0   0.0        0.1   13.1   0.0    1.4  1  ABC_tran   ABC transporter
      0.064   13.3   0.0         12    5.9   0.0    2.3  2  Dynamin_N  Dynamin family
      0.067   12.2   0.0       0.64    8.9   0.0    2.0  2  MeaB       Methylmalonyl Co-A mutase-associated GTPase MeaB
      0.075   12.6   0.0        7.5    6.0   0.0    2.2  2  GTP_EFTU   Elongation factor Tu GTP binding domain
       0.12   11.9   0.0        1.1    8.7   0.0    2.2  2  Arf        ADP-ribosylation factor family


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   6.4e-26   1.4e-22       1      87 [.     175     287 ..     175     316 .. 0.80

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 6.4e-26
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE.................EEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEE CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke.................ielvDtpGliegaseekglgkaflalee.adlill 81 
                 +v++vG pN+GKStL++++t+++ +v+++++tT++++ g+v l++++                 ++++D+pGl+ega+ ++glg  fl+++e a ++++
  KKY22848.1 175 DVGLVGLPNAGKSTLLRSITNSRTRVGNWAFTTLEPKIGTVILDDHKgrprvrsllptgetrtnFTIADIPGLVEGAHLDRGLGLGFLRHIErARILCF 273
                 599**************************************96643345566666666666666*************************99989***** PP

                 EEETT........T CS
    MMR_HSR1  82 vvdas........e 87 
                 v+d+s        +
  KKY22848.1 274 VIDLSagdavlalQ 287
                 ***99655544431 PP

>> GTP1_OBG  GTP1/OBG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.1   8.6e-12   1.9e-08      57     102 ..       7      52 ..       2      93 .. 0.79
   2 !   32.3   0.0     3e-11   6.7e-08     104     155 .]     120     172 ..     108     172 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 8.6e-12
                 CTSSEEE-------BTTTB-------EEEEESTTEEEEETTTTEEE CS
    GTP1_OBG  57 kykkkikAenGenGkgknksGkkgkdlvikvPvgtvvkdeetgevl 102
                 ++  +++A +G+ G+gkn+ G++g+d+vi+vP+gtvvk+ e+ ++ 
  KKY22848.1   7 ETAGTFRAGRGRGGMGKNQGGRRGEDVVIEVPIGTVVKEVERWDFA 52 
                 566789*******************************986655433 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 3e-11
                 EE-S.TT-EEEEE-----EE-GGGC-CSSCSS--EEEE-----EEEEEEEECS CS
    GTP1_OBG 104 dlte.dgeevlvakGGkgGkGnaafksstnraprfaekGeegeereleLelkl 155
                 dl++  ++ +l+a+GG gG+Gn +f +++ + p++a++G++g + +leLelkl
  KKY22848.1 120 DLDAhMSQPMLLAAGGIGGLGNPHFSTAEVTRPKIASRGQMGVKVRLELELKL 172
                 55542578899****************************************95 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   4.9e-12   1.1e-08       3      47 ..     176     220 ..     174     249 .. 0.89
   2 ?   -2.0   0.0         1   2.3e+03     136     153 ..     413     430 ..     412     432 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 4.9e-12
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTE CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgk 47 
                 v lvG pn+Gk+tl+ ++t+++++vgNw+ +t e k g++ l+++
  KKY22848.1 176 VGLVGLPNAGKSTLLRSITNSRTRVGNWAFTTLEPKIGTVILDDH 220
                 789**********************************99987655 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1
                 S-EEEEBTTTTBTHHHHH CS
      FeoB_N 136 vpvvktsakkkegieell 153
                 v+++++sa k+eg+e+++
  KKY22848.1 413 VECLPVSAMKGEGVENVV 430
                 6899**********9875 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.5e-05       0.1       4      34 ..     166     196 ..     164     221 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.5e-05
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagl 34 
                 ++l+lk    v++vG   aGKStLl+ +++ 
  KKY22848.1 166 LELELKLLADVGLVGLPNAGKSTLLRSITNS 196
                 5678888889******************976 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0081        18       1      22 [.     176     197 ..     176     210 .. 0.84
   2 ?    5.9   0.0    0.0054        12      90     135 ..     226     274 ..     201     311 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0081
                 EEEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlged 22 
                 + +vG  ++GKS++l +++ ++
  KKY22848.1 176 VGLVGLPNAGKSTLLRSITNSR 197
                 6789999********9998776 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0054
                 -EEEEEEETTS-SEEEEE---B-SSSGTTS...HHHHHHHSTTEEEEEE CS
   Dynamin_N  90 villkilsllvkgltlvDlPGldsvnkrdq...elvkeyikkadiilav 135
                 v +l +++ ++ + t+ D PGl + ++ d        ++i++a+i+ +v
  KKY22848.1 226 VRSLLPTGETRTNFTIADIPGLVEGAHLDRglgLGFLRHIERARILCFV 274
                 667889999**************99988875553344444444444444 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00029      0.64      32      57 ..     176     201 ..     172     221 .. 0.83
   2 ?    0.6   0.0       0.1   2.3e+02     172     225 ..     365     433 ..     364     439 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00029
                 EEEEE-TTSSHHHHHHHHHHHHHCTT CS
        MeaB  32 vGltGvPGaGkstlvealglelrrrG 57 
                 vGl G+P aGkstl+  ++ + +r G
  KKY22848.1 176 VGLVGLPNAGKSTLLRSITNSRTRVG 201
                 9**************99987766655 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.1
                 EEEE---HHHHHHHHHHHHHHHHHCST........TBTTB--.......EEEEEBCCCTBSHHHHHHHH CS
        MeaB 172 ivvnkaDkkeaekaarelraaleleee........kekeWrp.......kvlktsavegeGidelvdai 225
                 iv  kaD++ ++     l++ l++ +         k ++W+p       + l +sa++geG++++v  +
  KKY22848.1 365 IVATKADLPSTQSNFLSLKTSLQKIQAgeephpsgKPNTWSPqqngdpvECLPVSAMKGEGVENVVGIV 433
                 567788877777777777777777666667777773455555222221257889********9998665 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.011        25       5      27 ..     175     197 ..     171     213 .. 0.85
   2 ?    6.0   0.0    0.0033       7.5     124     189 ..     362     434 ..     347     439 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.011
                 EEEEEESTTSSHHHHHHHHHHHT CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlykt 27 
                  +g++g  ++GK+TL+ +++ + 
  KKY22848.1 175 DVGLVGLPNAGKSTLLRSITNSR 197
                 57899999*********999765 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0033
                 EEEEEEESCGST..HHHHHHHHHHHHHHHHHH........HHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHH CS
    GTP_EFTU 124 piivfiNKmDrl..kaelkeiveevkqklsrk........eeklekygekgekevpvvfgSalkgegvktllealv 189
                 p +++ +K+D +  ++++  +++ ++ k+++          +++ + +++g + v+++++Sa+kgegv++++  ++
  KKY22848.1 362 PWFIVATKADLPstQSNFLSLKTSLQ-KIQAGeephpsgkPNTW-SPQQNG-DPVECLPVSAMKGEGVENVVGIVT 434
                 56777888888877555555555555.44222344444322222.223333.79**************99987766 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00048       1.1      19      40 ..     178     199 ..     163     221 .. 0.75
   2 ?    0.3   0.0      0.18   4.1e+02     113     165 ..     358     427 ..     352     434 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00048
                 EEESTTSSHHHHHHHHHHSSCE CS
         Arf  19 llGLDnaGKtTilkklkleelv 40 
                 l+GL naGK+T+l  +++ ++ 
  KKY22848.1 178 LVGLPNAGKSTLLRSITNSRTR 199
                 79************99887754 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.18
                 CTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSS..................SSSSEEEEEEBTTTTBTHH CS
         Arf 113 lkevallvlaNKqDlpealseeelrellgleelk..................gkrkleiqkcsavkgeglk 165
                 +++ ++ ++a K Dlp++ s+  l+ + +l++++                  +  ++e   +sa+kgeg++
  KKY22848.1 358 ISSKPWFIVATKADLPSTQSN-FLSLKTSLQKIQageephpsgkpntwspqqNGDPVECLPVSAMKGEGVE 427
                 666788999999999987654.4555555555543333333333333333334455566666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2901.64
//
Query:       KKY22849.1  [L=265]
Description: putative ubiquitin-conjugating enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1705.84
//
Query:       KKY22850.1  [L=227]
Description: hypothetical protein UCRPC4_g03050 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-29  102.6  19.0    4.7e-28   98.3  19.0    2.3  1  Ccdc124     Coiled-coil domain-containing protein 124 /Oxs1


Domain annotation for each model (and alignments):
>> Ccdc124  Coiled-coil domain-containing protein 124 /Oxs1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3  19.0   2.6e-32   4.7e-28       2     128 ..      53     197 ..       4     198 .. 0.78

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 2.6e-32
     Ccdc124   2 raqiekreeeekkkeeke..............k.kekkkakkkeveekeleenvnrlsrae.enaeeeekveAsgideaiaaLsv..k.keekldrhpe 81 
                 +a+++k++e+++kk+ek+              k ++k ++kk++ + +  + n+ +l  +e  + ++ +  +A+gid a++aLs+  + +e k+drhpe
  KKY22850.1  53 EASANKAAEAAAKKAEKAallaaeeaslpskpKgNAKSATKKTSAAPSRGTLNLSQL-DDEpPTSKKASDLNATGIDSALDALSLttNgNELKIDRHPE 150
                 566666666666666666777777776665432333333333343344444577777.44434555588999*************6533599******* PP

     Ccdc124  82 krlkAaYkafeeeeLprlkeenpgLrlsQlkqllkkewkkspeNPlN 128
                 +r+kAaY+afe+++Lp+l++enpgLr++Q  +l++ke++ks eNP+N
  KKY22850.1 151 RRFKAAYAAFEARRLPELEQENPGLRRNQRVELCRKEFEKSDENPFN 197
                 **********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1738  (0.0969379); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 1571.06
//
Query:       KKY22851.1  [L=1346]
Description: putative low temperature essential 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-44  149.9   0.1    1.4e-43  149.2   0.1    1.3  1  RasGEF    RasGEF domain
    2.4e-12   47.0   0.2    5.3e-12   45.9   0.2    1.6  1  RasGEF_N  RasGEF N-terminal motif


Domain annotation for each model (and alignments):
>> RasGEF  RasGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.2   0.1   1.5e-47   1.4e-43       2     177 .]    1103    1296 ..    1102    1296 .. 0.92

  Alignments for each domain:
  == domain 1  score: 149.2 bits;  conditional E-value: 1.5e-47
      RasGEF    2 lAeqltlieaelfskikpeellgsawsked...........rs..pnveaviarfnrlsnwvaseilseeslkkRakviekfikiakecrklnNfns 85  
                  lA+q+t++e    s++++++l++++w +++           ++  + ++ v+arfn +++wv+s++++++++++Ra++i k+i++a + rk++N+++
  KKY22851.1 1103 LAQQFTIVEKAAISEVDWTDLVDMKWDNRSpavlnwvhylrEKdhKGIDLVTARFNIMVKWVVSQVVMTQDIHERARTIIKYIHVAANARKIRNYAT 1199
                  9****************************999998888875223344999*********************************************** PP

      RasGEF   86 lmailsaLqsspvsrLkktweavskkslktleeleelmspennfknyrealkssasskpciPflglyltdltfieegnpdtl.....egk.iNfeKr 176 
                  +++i+ +L+s++  rLkktw+ ++  ++++l+e+e l++p +nf+++r+++++   +++ciPf+gly++dlt+++++ p ++      ++ iNfe++
  KKY22851.1 1200 MLQIVIGLTSTDCTRLKKTWDLIPGPDQRILKEMELLIQPVRNFHALRDEMETNDLQEGCIPFVGLYVHDLTYNAQK-PAQIastrdGEPlINFERY 1295
                  *************************************************************************9876.3333455666778****98 PP

      RasGEF  177 r 177 
                  r
  KKY22851.1 1296 R 1296
                  6 PP

>> RasGEF_N  RasGEF N-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.2   5.9e-16   5.3e-12       2      99 ..      35     123 ..      34     129 .. 0.87

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 5.9e-16
    RasGEF_N   2 vkagtlekLierLtskrlldddfletFLltyrsFttpaeLlekLierye..inppnnlesdesnswnsksssnirlrvlsvlkewvenhyy.dfsddka 97 
                 + a+t++++i+++ts++++d+d++++F+lt+rs+ + +++l++L++r +  in+ +++ +             ir+r++ ++++w+ n++  df  + +
  KKY22851.1  35 ITAATPARIIAQITSESFMDYDLVSAFFLTFRSYLSCENVLNLLLARLRwaINRLQDDGRI------------IRIRTFAAIRHWILNYFLdDFVGNEN 121
                 789*********************************************7555555555555............*****************978987776 PP

    RasGEF_N  98 ll 99 
                 l+
  KKY22851.1 122 LR 123
                 55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.44
# Mc/sec: 9184.96
//
Query:       KKY22852.1  [L=327]
Description: putative developmental regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 2093.20
//
Query:       KKY22853.1  [L=319]
Description: putative saga-like transcriptional regulatory complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-29  101.2   1.1    1.1e-28   99.0   0.4    2.2  2  TFIID-18kDa  Transcription initiation factor IID, 18kD subuni
  ------ inclusion threshold ------
      0.068   13.3   0.3       0.23   11.6   0.0    2.0  2  TAFII28      hTAFII28-like protein conserved region
        0.1   12.5   0.2       0.38   10.7   0.1    1.9  2  ALMS_repeat  Alstrom syndrome repeat
          1   10.1   4.1       0.58   10.8   0.7    2.2  2  DUF2849      Protein of unknown function (DUF2849)


Domain annotation for each model (and alignments):
>> TFIID-18kDa  Transcription initiation factor IID, 18kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.4   2.5e-32   1.1e-28       6      93 .]       2      88 ..       1      88 [. 0.97
   2 ?   -0.0   0.0       0.2   9.1e+02      17      49 ..     211     243 ..     205     251 .. 0.84

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 2.5e-32
                 CCHHHHHCTTS-SS--HHHHHHHHHHHHHHHHHHHHHHHC-XXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  TFIID-18kDa  6 elqsmlyalGdvkePlqetvqlledlvrgyliellqqaakvaklrgsrkitlEDllfliRkDkkKlnRlkellslkellkkakKqfde 93
                 e+q+m++++G+  e  +et++++e++vr+++ie+l+qa  +a++rg r+i   Dl+fliR+Dk+K++Rl+++ls+k+++ k++K+ d+
   KKY22853.1  2 EIQQMMFVSGETAEASHETTSMIEEIVRQQVIEILTQASAIANRRGVRSISTADLIFLIRHDKAKVSRLRTFLSWKDVR-KNVKDSDD 88
                 9******************************************************************************.99999875 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.2
                  -SS--HHHHHHHHHHHHHHHHHHHHHHHC-XXX CS
  TFIID-18kDa  17 vkePlqetvqlledlvrgyliellqqaakvakl 49 
                  + +P ++ v++l  l  + +  ++++a kv + 
   KKY22853.1 211 DSKPNDDIVDILGFLTFEIVQTITEEALKVKES 243
                  678999999***999999999999999999765 PP

>> TAFII28  hTAFII28-like protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.84   3.8e+03      45      68 ..      22      45 ..       7      55 .. 0.67
   2 ?   11.6   0.0   5.2e-05      0.23      55      86 .]     230     294 ..     206     294 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.84
     TAFII28 45 ivvaglaKvFvgeiveeArevqee 68
                 +++ +    v ei  +A  + ++
  KKY22853.1 22 SMIEEIVRQQVIEILTQASAIANR 45
                455555555566777777666655 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 5.2e-05
     TAFII28  55 vgeiveeArevqeew...ees...............................gplqpehlreayrr 86 
                 v+ i eeA++v+e++   + +                               +p++p+h+rea+rr
  KKY22853.1 230 VQTITEEALKVKESEdlyN-QrtsanaatadqnskkrkreqsslfqmpeegrTPVEPKHVREAFRR 294
                 6778899999997765542.135566677777888888889999999999955***********97 PP

>> ALMS_repeat  Alstrom syndrome repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.66   2.9e+03      28      38 ..     125     135 ..     115     136 .. 0.76
   2 ?   10.7   0.1   8.4e-05      0.38       9      38 ..     233     262 ..     231     273 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.66
  ALMS_repeat  28 giptvtSssYS 38 
                  g+p   Ss+YS
   KKY22853.1 125 GLPWDVSSFYS 135
                  67778899**9 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 8.4e-05
  ALMS_repeat   9 lTEeALKVsavpgPadQkTgiptvtSssYS 38 
                  +TEeALKV       +Q T  +++t    S
   KKY22853.1 233 ITEEALKVKESEDLYNQRTSANAATADQNS 262
                  8*******************9999876666 PP

>> DUF2849  Protein of unknown function (DUF2849)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.74   3.3e+03      35      52 ..     143     160 ..     128     180 .. 0.55
   2 ?   10.8   0.7   0.00013      0.58      26      78 ..     240     294 ..     235     299 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.74
     DUF2849  35 adealaalaaaaaaeqev 52 
                 ++e + al+++++aeq+ 
  KKY22853.1 143 DEEGDNALNEEEEAEQNY 160
                 444444555544444433 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00013
     DUF2849  26 laeAavl.eeadealaalaaaaaaeqevvgvyladveeeedg.vepahlREriRa 78 
                 ++e++ l ++++ a+aa a++++++++  +  l+++ ee    vep+h+RE++R+
  KKY22853.1 240 VKESEDLyNQRTSANAATADQNSKKRKREQSSLFQMPEEGRTpVEPKHVREAFRR 294
                 6778888788899999999999999999999999998877778***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1248  (0.0696079); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2207.07
//
Query:       KKY22854.1  [L=1096]
Description: putative protein kinase domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-08   33.3   0.0    4.6e-07   29.5   0.0    2.1  2  Pkinase      Protein kinase domain
    4.5e-05   22.9   0.0    0.00047   19.5   0.0    2.3  2  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   5.1e-11   4.6e-07      34     167 ..     176     316 ..     163     327 .. 0.75
   2 ?    1.2   0.0     0.021   1.9e+02     211     257 ..     548     599 ..     498     605 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 5.1e-11
                 CHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH........HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS- CS
     Pkinase  34 kekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle........rkgslseeeakkiakqilegleylHskgiiHrDl 124
                 + + +  +e++vl+E++ l ++ h++i  ++ ++ e +++y ++  +++ +l+ +l           + +  e++ ++ + ++++l++lHskg +H  +
  KKY22854.1 176 EAEPSCWQEDDVLAEVASLSNFTHEHITSIFASYAEANNFYALFTPAPEYTLKAFLGdspksfesLPKPVRRETLINWPHCLASALAWLHSKGRCHGAI 274
                 44445566699******************************99999999999999997665554323446667999*********************** PP

                 SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HH CS
     Pkinase 125 KpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPE 167
                  p+Ni id++  +  + F   + l  +  + + +   +Y APE
  KKY22854.1 275 RPSNIYIDSEFRIFFGYFSAFNILLPNA-KVDDIEAYQYAAPE 316
                 ********44333333333333333333.44445556666666 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.021
                 HTHHHHHHHCTSHH...HHHTTS.....-HHHHHHHHHHT-SSGCCSTTHHH CS
     Pkinase 211 dqlekilkilgetkeklpeasei.....seeakdllkkllkkdpkkRltaee 257
                  ql + +k l++   k +++s+       + +++++ k+++k+p+ R+ta  
  KKY22854.1 548 GQLYSWCKQLDQDARKRATKSDGsafaaVKPMLEVILKCIEKEPSARVTAGT 599
                 5555555555432222222222245555788999***************865 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   5.3e-08   0.00047      44     148 ..     183     293 ..     158     327 .. 0.82
   2 ?    0.5   0.0     0.033     3e+02     231     257 ..     576     602 ..     495     604 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 5.3e-08
                  HHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT......CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEE CS
  Pkinase_Tyr  44 ekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk......ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvL 135
                  +++++l e++ ++++ h++i ++ + + ++++ + ++  +++ +L+ fL ++        ++++ ++l+++ + +A+++++L+sk   H  ++  N+ 
   KKY22854.1 183 QEDDVLAEVASLSNFTHEHITSIFASYAEANNFYALFTPAPEYTLKAFLGDSpksfesLPKPVRRETLINWPHCLASALAWLHSKGRCHGAIRPSNIY 280
                  46799**********************************************9999988788999********************************** PP

                  EEETTEEEE-STT CS
  Pkinase_Tyr 136 lsenkvvkisDfG 148
                  ++++  +  + f 
   KKY22854.1 281 IDSEFRIFFGYFS 293
                  *998777655555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.033
                  BHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 231 peelyelmkkcweedpeeRptfselve 257
                   + + e++ kc e++p+ R t  +l e
   KKY22854.1 576 VKPMLEVILKCIEKEPSARVTAGTLEE 602
                  456778888999999999988777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1096 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.52
# Mc/sec: 6295.45
//
Query:       KKY22855.1  [L=826]
Description: putative cyclin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-24   85.5   0.0    1.2e-15   57.5   0.0    2.6  2  adh_short     short chain dehydrogenase
    1.7e-16   60.5   0.0    1.1e-11   44.7   0.0    2.6  2  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
      8e-15   54.7   1.2    3.9e-14   52.5   0.6    2.2  2  Cyclin_N      Cyclin, N-terminal domain
    8.6e-06   25.8   0.5    0.00017   21.6   0.0    2.7  2  Cyclin_C      Cyclin, C-terminal domain
  ------ inclusion threshold ------
       0.04   13.2   0.1        0.1   11.9   0.0    1.7  2  PfkB          pfkB family carbohydrate kinase
       0.14   12.1   0.1       0.39   10.6   0.0    1.8  2  KR            KR domain
        4.6    7.4   8.4        1.8    8.7   0.5    2.8  3  TFIIB         Transcription factor TFIIB repeat


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   4.6e-19   1.2e-15       7     142 ..     522     664 ..     521     670 .. 0.87
   2 !   25.0   0.0   4.2e-09   1.1e-05     145     187 ..     686     730 ..     681     736 .. 0.92

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 4.6e-19
                 STTSHHHHHHHHHH.HHTT-EEEEEESCHHHHHHHHHHHHHT...TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGCSHHH CS
   adh_short   7 GassGIGraiakel.akeGakvvvvdrseekleevakelkee...gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfselseee 100
                 G  +GIG a+ak + a+ G+++++vd++e++l ++++ l ++   +++  +++vDv++ +e++++ ++  +k+ +ldvL  NAG   + ++ +  ++ e
  KKY22855.1 522 GSEEGIGFAMAKICrATYGMNLALVDKNEDNLTKAKAVLTSLaknNENTETYNVDVSQLTEWKTFKSDFDAKFANLDVLFLNAGTaFQAQDGKPWEDPE 620
                 7889********985789************998888777776655889*************************************74445555566666 PP

                 .HHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB CS
   adh_short 101 .wervievNltgvflltravlpaml.kqssGrIvnvsSvagkvp 142
                    ++++vN++g+++  +++lp++   +s  +Iv ++S +g   
  KKY22855.1 621 yHHKTYDVNVFGIINGLATFLPKIQsTSSPSTIVITGSKQGITT 664
                 6999*******************987888899*******99655 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 4.2e-09
                 TBHHHHHHHHHHHHHHHHHHHHHGGGT..EEEEEEEESSBSSHHH CS
   adh_short 145 gvaaYsAsKaavagltrslakelaptg..irvnavaPGlvdTdma 187
                 + +aY AsKaav++l++ l++++++++  ++v+ + PG v T++ 
  KKY22855.1 686 SNPAYNASKAAVKHLAEHLSHDMKQQSpsVSVHLLIPGWVYTGLS 730
                 679***********************999*************986 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   4.5e-15   1.1e-11       4     130 ..     525     660 ..     522     672 .. 0.78
   2 !   12.8   0.0   2.4e-05     0.062     137     182 ..     685     733 ..     678     756 .. 0.81

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 4.5e-15
                   TSHHHHHHHHHHH.TT-EEEEEESSGGHHHHHHHHHHHTT...SEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG.CSS-GGGH-HH CS
  adh_short_C2   4 sgIGraiAkalae.eGaevvltdlneeakkrveelaeelg...aev..lecDVtdeeqvealveevvekfgklDilvnnagiapk.lkgpfletsre 93 
                   +gIG+a+Ak + +  G++++l+d ne++  +++++ ++l    ++   +++DV++ ++++++ ++  +kf +lD+l+ nag a +         + e
    KKY22855.1 525 EGIGFAMAKICRAtYGMNLALVDKNEDNLTKAKAVLTSLAknnENTetYNVDVSQLTEWKTFKSDFDAKFANLDVLFLNAGTAFQaQ-DGKPWEDPE 620
                   7*********96527************966666666665522222245*************************************43.333445789 PP

                   HHHHHHHHHTHHHHHHHHHHHHHCTSC...CEEEEEEEGG CS
  adh_short_C2  94 efdraldvnlyslfllakaalplmkeg...gsivnlssvg 130
                     +++ dvn+ ++++ +  +lp ++++   + iv + s +
    KKY22855.1 621 YHHKTYDVNVFGIINGLATFLPKIQSTsspSTIVITGSKQ 660
                   999*******************888873445555555543 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2.4e-05
                   TTT.HHHHHHHHHHHHHHHHHHHHGGG..TEEEEEEEE--BHCTGGGGS CS
  adh_short_C2 137 nyn.aygaaKaalealtrylAvelgpk..giRvNavspgpikTlaasgi 182
                   + n ay+a+Kaa+++l+  l +++ ++   + v+   pg++ T ++ + 
    KKY22855.1 685 GSNpAYNASKAAVKHLAEHLSHDMKQQspSVSVHLLIPGWVYTGLSGNP 733
                   55669*******************99633699***********986554 PP

>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.6   1.5e-17   3.9e-14      17     126 ..      47     179 ..      35     180 .. 0.84
   2 ?   -0.2   0.0      0.31   7.9e+02      74      93 ..     226     245 ..     218     271 .. 0.86

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 1.5e-17
                 TTCTTCTSS.S-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CC......CHHHHHHHHHHHHHHHHSSS---HHHHHHHT...... CS
    Cyclin_N  17 pdyldqqpe.lnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkd......klqlvgatcLllAaKveeisppkledlvyit...... 102
                 p++ld     +++e+Ra  ++++++v   +kl + tl++a +yl+Rf+ + s+         +   v+at+++lA+Kvee  + k+++l++++      
  KKY22855.1  47 PSVLDGLAMsTEHEHRAKGVNFITQVGIMLKLPQLTLATASVYLHRFFMRYSMVTVqnrvgmHHYAVAATAIFLATKVEES-SRKMRELIIACcrvaqk 144
                 55553333314569*********************************997755444478999999*************999.8**************** PP

                 ..........TT.SS-HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N 103 ..........de.afteeeilemErliLetLnfdl 126
                           +e    +++il  E l+Le+L+fdl
  KKY22855.1 145 qpnivvdeqsKEyWKWRDTILYNEDLLLEALCFDL 179
                 ******877644444589***************99 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.31
                 HHHHHHHHHHHHHHHSSS-- CS
    Cyclin_N  74 qlvgatcLllAaKveeispp 93 
                 ++++a++L+ AaK  ++  p
  KKY22855.1 226 RTIAASALYAAAKHTKTAFP 245
                 689**********9777655 PP

>> Cyclin_C  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.4      0.24   6.1e+02      27      58 ..      92     124 ..      76     145 .. 0.70
   2 !   21.6   0.0   6.7e-08   0.00017       3      94 ..     184     279 ..     183     288 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.24
                 HCHHHHHHCSCC.HCCS-HHHHHHHHHHHCCHH CS
    Cyclin_C  27 kylleltlldyd.flsyppSliAaaalllarst 58 
                 ++++ ++++ ++  +++    +Aa+a++la+++
  KKY22855.1  92 RFFMRYSMVTVQnRVGMHHYAVAATAIFLATKV 124
                 556666665555566666667899999999887 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 6.7e-08
                 HHHHHHHHHCCSSHT.-HCCHHCHHCHHHHHHCSCCHCCS-HHHHHHHHHHHCCHHH....HS--S-HHHHHHC---HHHHHHHHHHHHHHHHHHH CS
    Cyclin_C   3 plsFlrrflkaadasedselrtlakylleltlldydflsyppSliAaaalllarstl....nspewtetlehytgyskedlkpcvelilellssap 94 
                 p++Fl  fl   + +e++ lr+ a  ++  ++l + +l +p  +iAa+al++a +       + ++ +   +++g++ +++++ +++++e++ + p
  KKY22855.1 184 PYQFLFDFLCYYNVQENKLLRNAAWAFVNDSTLTVLCLLFPARTIAASALYAAAKHTktafPDDDYGRPWWEHLGIEIKNIRQACNKMAEVYENTP 279
                 566655554443444456999********************************999766666666999999********************97665 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     4e-05       0.1     145     254 ..     200     308 ..     128     309 .. 0.82
   2 ?   -2.8   0.1       1.2     3e+03     151     190 ..     560     603 ..     544     609 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4e-05
                 HHHHHHHHHHHHHTTE.EEEEECESSSHH..HHHHHHHHHCTESEEEEEHHHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEE CS
        PfkB 145 eavleelaeaaknggt.fdpnlldplgaq..fkeallellaladllkpneeElealtgekledieealaalhklkakgaktvvvtlGkeGalvvekdge 240
                 +++l+ +a+a  n  t    +l+  ++a   +++al ++  ++  ++p ++  + ++++ + +i+++ +a++k+ + +++t +  +G +Ga++ + ++ 
  KKY22855.1 200 NKLLRNAAWAFVNDSTlT--VLCLLFPARtiAASALYAAAKHTKTAFPDDDYGRPWWEHLGIEIKNIRQACNKMAEVYENTPLPRQGDKGAYINTPEDD 296
                 566677777777777653..4444444444589999999*******************************************************96666 PP

                 EEEEE.SSSS-SBG CS
        PfkB 241 lkvpavpkvkvvDt 254
                  +v a  k+ + +t
  KKY22855.1 297 DEVAA--KTRITST 308
                 56665..4555555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.2
                 HHHHHHHTTE....EEEEECESSSHHHHHHHHHHHCTESEEEEE CS
        PfkB 151 laeaaknggt....fdpnlldplgaqfkeallellaladllkpn 190
                 l+++akn+ +     + +   + ++ fk+++++ +a  d+l++n
  KKY22855.1 560 LTSLAKNNENtetyNVDVSQLTEWKTFKSDFDAKFANLDVLFLN 603
                 33344444443324344444444444777777777777777777 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       4.1     1e+04     123     154 ..      85     116 ..      80     119 .. 0.77
   2 ?   10.6   0.0   0.00015      0.39       7      91 ..     522     606 ..     521     614 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.1
                 TTTS--SEEEEEEEHHHHH--TT-HHHHHHHH CS
          KR 123 ledesldffvlfSSiagllgsagqanYaaaNa 154
                 +++  l  f +  S+ ++    g  +Ya a +
  KKY22855.1  85 TASVYLHRFFMRYSMVTVQNRVGMHHYAVAAT 116
                 55566777888889999999999999999876 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00015
                 TTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---- CS
          KR   7 GGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgv 91 
                 G   g+G ++a+   +    +l+l+ +++ +  ++ka +++l++++ + e++++Dvs+ ++ ++  ++++a+++++   +  Ag+
  KKY22855.1 522 GSEEGIGFAMAKICRATYGMNLALVDKNEDNLTKAKAVLTSLAKNNENTETYNVDVSQLTEWKTFKSDFDAKFANLDVLFLNAGT 606
                 666799*****9999999**********99999999*************************************999999888886 PP

>> TFIIB  Transcription factor TFIIB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.5    0.0007       1.8      30      68 ..     104     143 ..      94     145 .. 0.78
   2 ?    2.5   0.6     0.058   1.5e+02      38      53 ..     227     242 ..     225     244 .. 0.86
   3 ?   -3.8   0.0       5.4   1.4e+04      27      38 ..     493     504 ..     492     504 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0007
                 TTTSGCTTHHHTTHHHHHHTTTTSS--HHH.HHHHSS--S CS
       TFIIB  30 vlkGrspagiaAAclyiAcrkeevkrtqke.issvlqVse 68 
                 +  G    ++aA+++++A++ ee  r  +e i +  +V++
  KKY22855.1 104 NRVGMHHYAVAATAIFLATKVEESSRKMRElIIACCRVAQ 143
                 555777789**************99988884667777766 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.058
                 HHHTTHHHHHHTTTTS CS
       TFIIB  38 giaAAclyiAcrkeev 53 
                 +iaA++ly A++  ++
  KKY22855.1 227 TIAASALYAAAKHTKT 242
                 79*********98775 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 5.4
                 TSTTTTSGCTTH CS
       TFIIB  27 eekvlkGrspag 38 
                 +ek+  Grs++g
  KKY22855.1 493 DEKTAHGRSMNG 504
                 789999***986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.50
# Mc/sec: 4923.14
//
Query:       KKY22856.1  [L=540]
Description: putative glucoamylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-98  330.7   0.0    1.5e-98  330.5   0.0    1.0  1  Glyco_hydro_15  Glycosyl hydrolases family 15
  ------ inclusion threshold ------
       0.17   11.9   0.1       0.32   11.0   0.1    1.4  1  HAP2-GCS1       Male gamete fusion factor


Domain annotation for each model (and alignments):
>> Glyco_hydro_15  Glycosyl hydrolases family 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.5   0.0  1.7e-102   1.5e-98       3     446 ..      38     453 ..      36     455 .. 0.96

  Alignments for each domain:
  == domain 1  score: 330.5 bits;  conditional E-value: 1.7e-102
                     HHHHHHHCBCSTTSSBTTS-TT-B-S-S-BSSSB--SEEHHHHHHHHHHHH.......HHHHHTTT-HCCHHHHHHHHHHHHHHCTS-BTTB-TT CS
  Glyco_hydro_15   3 rldlylrnvktlilleqnpvtGlliASpstsdpDYrytWvRDsvyvilavwglgyrdedrakayeleqslvklmrglleamvrqagkvekfketq 97 
                     + +++l+n++  +  ++++ +G+++ASps  +pDY+ytW+RDs+++++ ++ +g            + sl++l+++++  +++ ++  +++++ +
      KKY22856.1  38 AVQGVLNNIGPNGTNAPGADAGIVVASPSRVNPDYYYTWTRDSALTFKYLVDTG------------NSSLQTLIEDYVISQAKLQAVDNPSGDLS 120
                     56899**********************************************777............99*************************99 PP

                     SCGGGG--EE-TTS-B--S-..-S--BTTHHHHHHHHHHHH....HCTT..HCHCCCCHHHHTHHHHHHHHHHHTTS-EE-TTS--ECEEHH..H CS
  Glyco_hydro_15  98 stkgLhakyftktgstvvGddewghlQlDatslyllalaqm....tasg..lqiistldevafvqnlvdYieaayktpdfglWEenqgeselnas 186
                      ++gL +++f+ +++++ G+  wg++Q+D+++l+++al+++    +a g  +++++ ++++  vqn++ Y+++++++++f+lWEe++g+s++  +
      KKY22856.1 121 TGEGLAEPKFYLNKTAFLGS--WGRPQRDGPALRATALITFgndkLALGqnSTVKEIIWPI--VQNDLAYVAQYWNESGFDLWEEVNGSSFF--T 209
                     999*****************..*******************77774444669999******..*****************************..* PP

                     HHHHHHHHHHHHHHHHHCT-HHHHCCHHHHHHHHHHHHHSTTT..GGGEETTCCECECSCH.....HHHTTS--S-BCHHHHHHHHCS-TTS-.. CS
  Glyco_hydro_15 187 svgmakAlleaideadlfgakgdaqlvektkdeilnklqgkygckrgfwplfntylildgsfaedkeqvqeyrealdasllllpelyfvpadd.. 279
                     ++++++Al+e++++a+++g  +++  +e+++++il+ l       +++w+ + ++ ++d            +r++ld++ +l ++++f+p+ +  
      KKY22856.1 210 TAVQHRALVEGAKFATAVG--ESCANCESQAPDILCFL-------QDYWNGSSIISNMDVQ------SSDFSRSGLDCNSILTSIHTFDPDPSvg 289
                     *******************..9****************.......*****88888888877......7889*****************9987633 PP

                     TT-TT-TTTSHHHHHHHHHHHHHHHHHSGGGTT-STTS...--SBTT--CGSSSBSCT--BHHHHHHHHHHHHHHHHHHHHHTE-EEEECCCHHH CS
  Glyco_hydro_15 280 vdeeyqnpqsprllaqslyildsllsegflavgeldpl...vrRysedvkpdklglsGrpyylctlwtvetlldelyekagkgrlwglvryalgl 371
                     +d+++++p+s+++la++++++ds++s +++++  ++++   ++Rysed ++      G+p+ylct++++e+l+d+ly+ +  g+ +++++ + ++
      KKY22856.1 290 CDNTTFQPCSDKALANHKAVVDSFRSIYTVNSDASFGEaaaIGRYSEDIYQ-----GGNPWYLCTYAAAEQLYDALYTYNATGN-VTVTELSKPF 378
                     799*****************************999999999*********8.....**************************99.********** PP

                     HHHHTTTTTGGGSSEEE.TCHHHHHHHHHHHHHHHHHHHHHH.S-TTS---SEE-TTT--EESSTT-HHHHHHHHHH CS
  Glyco_hydro_15 372 leklveskqltvGlppe.resvisaplpveeladliveavee.dnslgvLteevdvylgeliraqpllfsealllri 446
                     + +l  +  +t+G++++ +++++s+ ++v+++ad +v+++e+ ++s+g+L+e+++++ g+ ++a +l++s+a++l++
      KKY22856.1 379 FADLLPN--ITTGTYSSdSDEFNSINDAVKAYADGFVSIAEKyTPSNGSLAEQFSRENGTALSAGDLTWSYASFLTM 453
                     *******..*****************************************************************987 PP

>> HAP2-GCS1  Male gamete fusion factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   3.5e-05      0.32       3      35 ..     260     293 ..     258     305 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.5e-05
   HAP2-GCS1   3 vpkervdlsGreCdKiGvslsafakqpd.fCstk 35 
                 v++++++ sG  C+ i +s+++f   p+ +C++ 
  KKY22856.1 260 VQSSDFSRSGLDCNSILTSIHTFDPDPSvGCDNT 293
                 78999*******************9999999764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 3585.05
//
Query:       KKY22857.1  [L=256]
Description: putative riboflavin synthase alpha chain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.3e-42  141.5   3.6    3.5e-21   75.0   0.6    2.1  2  Lum_binding  Lumazine binding domain
  ------ inclusion threshold ------
       0.29   11.4   1.4        5.7    7.3   0.1    2.8  2  DUF4596      Domain of unknown function (DUF4596)


Domain annotation for each model (and alignments):
>> Lum_binding  Lumazine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.6   3.9e-25   3.5e-21       1      87 []       3      96 ..       3      96 .. 0.82
   2 !   67.6   0.1   7.9e-23   7.1e-19       1      87 []     109     203 ..     109     203 .. 0.90

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 3.9e-25
                 -S--SEEEEEEEEE.E.CGCTTEETEES..GGGGG..TTT-EEEETTEEEEEEE......EEE...SSEEEEEEEHHHHHHSSGGG--TTSEEEEEEE CS
  Lum_binding  1 tGiVeevgtvesieke.ekledltielp..elakylvekGdsiavnGvcLTVvt......eeve..eeeftvdvipeTlerttlgelkvgdkVNlEra 87
                 tG+Ve++gtv+si+k+ ek + l+i  +  e   + v  Gdsi+vnG+cLTV++             ++ftv+v+peTl+rt+lg+l   ++VNlEra
   KKY22857.1  3 TGLVETIGTVSSITKApEKGTILEI--TdcESILTDVVLGDSISVNGTCLTVTSfspqhsG--GihPTHFTVSVAPETLRRTNLGSLIDSSRVNLERA 96
                 8************877565666666..3356666667789************856665442..05599****************************96 PP

  == domain 2  score: 67.6 bits;  conditional E-value: 7.9e-23
                  -S--SEEEEEEEEE.ECGCTTEETEES...GGGGG..TTT-EEEETTEEEEEEEEEE..........SSEEEEEEEHHHHHHSSGGG--TTSEEEEEE CS
  Lum_binding   1 tGiVeevgtvesiekeekledltielp...elakylvekGdsiavnGvcLTVvteeve.........eeeftvdvipeTlerttlgelkvgdkVNlEr 86 
                  +G+V++v++++s+++++++ ++++ +p    + +y+vekG +++++G++LTV+  +v+         ++ +++++ip+T+e++  +++kvg++VN+E+
   KKY22857.1 109 QGHVDTVARIASVTPDGEALTFRL-VPrdqGILRYVVEKG-YVTLDGASLTVT--KVSdpvvsgtgeKGYWEIMLIPYTQEKIVTASKKVGEEVNVEI 202
                  8************99998888888.5569999********.***********8..455566777777999***************************8 PP

                  E CS
  Lum_binding  87 a 87 
                  +
   KKY22857.1 203 D 203
                  6 PP

>> DUF4596  Domain of unknown function (DUF4596)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1   0.00063       5.7      17      29 ..      47      59 ..      42      65 .. 0.84
   2 ?    1.8   0.1     0.032   2.8e+02      18      36 ..     154     171 ..     150     178 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00063
     DUF4596 17 sasiTvtsfSped 29
                 + +TvtsfSp+ 
  KKY22857.1 47 GTCLTVTSFSPQH 59
                5889*******86 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.032
     DUF4596  18 asiTvtsfSpedgsSpqGe 36 
                 as+Tvt +S     S  Ge
  KKY22857.1 154 ASLTVTKVSDPV-VSGTGE 171
                 899999887443.344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1631.65
//
Query:       KKY22858.1  [L=386]
Description: putative caib baif family enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-94  316.6   0.0    2.6e-94  316.4   0.0    1.0  1  CoA_transf_3  CoA-transferase family III
  ------ inclusion threshold ------
      0.098   12.6   0.0       0.22   11.5   0.0    1.6  1  SAM_4         SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> CoA_transf_3  CoA-transferase family III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.4   0.0   2.9e-98   2.6e-94      58     368 .]      50     361 ..      43     361 .. 0.98

  Alignments for each domain:
  == domain 1  score: 316.4 bits;  conditional E-value: 2.9e-98
  CoA_transf_3  58 avnrnKrsvalDlkseegrellkrLvakADVvieNfrpgvlerlglgyeelrainPrLiyasvsgyGqsGpkakrpgyDlvaqaasGlmsltgepdg 154
                   +vnrnK+sv l + +++g e+l++L++++D+++eN+ pg l+++ l+ye+++ainP+Liyas++gyGq+Gp+++rpg+D++++a++Glm++tg  dg
    KKY22858.1  50 WVNRNKKSVGLSFADPAGIEILHSLAKSCDILVENYLPGSLKKYSLDYESVSAINPSLIYASITGYGQTGPYSNRPGFDVMVEAEFGLMHITGARDG 146
                   89*********************************************************************************************** PP

  CoA_transf_3 155 pPvkvgvplgDivtgllaavailaallarertGkGqvidvslleaalallapqlleylatgevperq.gnrdpaaapygvyrtkdgwvaiaaatdkq 250
                   pPvkvgv+++D +tgl+++++i+aal++r +tGkGq  dvsl +  +a+la+ +   l +ge  e + g ++pa+ py+ +rt dg ++i+ a+d+ 
    KKY22858.1 147 PPVKVGVAVTDLTTGLYTVNSIMAALISRGKTGKGQWLDVSLSDCQTATLANLASSVLISGERDEGRwGTAHPAIVPYQGFRTLDGDIMIGGANDRL 243
                   ******************************************************99977777776555***************************** PP

  CoA_transf_3 251 waalckalgrpelaedprfatnasrlenraeldaelaewlaertaaewlellaaagvpaapvntleevlddpqlaarglvvevddpdygevpvvglp 347
                   ++ lc+ lg+pe+ +dprf  n+sr++nr+el   +++++ ++++ ewl++++  g+p a+vn++ ++l++ + +ar++ ++v++p  g++++v+ p
    KKY22858.1 244 FTILCHRLGKPEWSTDPRFTINSSRVANRNELCGMIESITTTKPTSEWLQIFEGSGIPYAAVNDVLDTLRHSHSQARKMTTTVPHPICGGMELVSPP 340
                   ************************************************************************************************* PP

  CoA_transf_3 348 vrlsetparvkraaPklGedt 368
                   v++s+ + ++++a+P+lG++t
    KKY22858.1 341 VKYSDSKIEIRSAPPTLGQHT 361
                   ********************8 PP

>> SAM_4  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.5e-05      0.22       4      26 ..     284     305 ..     281     320 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.5e-05
       SAM_4   4 vtlatsewiqffkeagipaglav 26 
                  t  tsew+q+f  +gip   av
  KKY22858.1 284 TTKPTSEWLQIFEGSGIPYA-AV 305
                 5778*************964.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2467.81
//
Query:       KKY22859.1  [L=1271]
Description: putative copper resistance-associated p-type [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.7e-46  155.9   0.1    1.8e-45  154.7   0.1    1.7  1  E1-E2_ATPase  E1-E2 ATPase
    3.3e-36  123.5  10.3    6.9e-15   55.3   0.0    4.6  4  HMA           Heavy-metal-associated domain
    1.6e-27   97.1   0.0    5.5e-26   92.2   0.0    2.4  1  Hydrolase     haloacid dehalogenase-like hydrolase
    0.00083   19.2   0.0     0.0023   17.7   0.0    1.7  2  Hydrolase_3   haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.16   11.7   0.4        1.2    8.9   0.0    2.5  3  PocR          Sensory domain found in PocR


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.7   0.1   4.9e-49   1.8e-45      13     180 ..     633     816 ..     615     817 .. 0.92

  Alignments for each domain:
  == domain 1  score: 154.7 bits;  conditional E-value: 4.9e-49
                   TS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.EEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTSTTS------- CS
  E1-E2_ATPase  13 gteeeidakelvpGDivllkagdrvpaDgrivegsa.evdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkiarlveeakskk 108
                   ++++++ ++ l++GD v +++g + p Dg i+   + ++des+LTGEs+pv+k  gd+v++G+v+v  ++++ Vt +g +++l++i+++v+e ++k+
    KKY22859.1 633 TSIKTVTVDMLEVGDTVSVPHGTSPPSDGTIIGTGDyRFDESSLTGESTPVKKIPGDKVYTGSVNVGPPVQISVTDIGGNSMLDQIVSVVREGQAKR 729
                   37889******************************************************************************************** PP

                   -HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT..............HHHHH.HHHHHHHHS-TTHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase 109 tplqkkldklgkvlvpvvlliallvflialllgksla..............eallr.alallvaaiPcaLplavplalalgarrlak 180
                   +p+++ +d +++++vp+++l+a+++f+i+++lg s                ++ l+ a+a++v+a+Pc+++la+p+al++g + +a+
    KKY22859.1 730 APIERVADIITGYFVPTITLLAITTFVIWVSLGVSGKlpqrylnndrggwvFWSLEfAIAVFVVACPCGIGLAAPTALFVGGGLAAQ 816
                   *******************************88888888899999999999777777************************998886 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.7   1.3e-09   4.7e-06       2      42 ..       7      47 ..       6      64 .. 0.89
   2 !   38.8   0.0   2.6e-13   9.2e-10       4      62 .]     192     250 ..     190     250 .. 0.97
   3 !   55.3   0.0   1.9e-18   6.9e-15       2      62 .]     275     334 ..     274     334 .. 0.94
   4 !    5.5   0.7    0.0065        23       1      20 [.     357     376 ..     357     378 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.3e-09
         HMA  2 vrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVeg 42
                + v+++hC +C+++v++vL+ + gV++v+v+  t++v + +
  KKY22859.1  7 ILVENVHCPSCVSHVQDVLEPFAGVTKVDVSILTDEVRILH 47
                679*********************************99865 PP

  == domain 2  score: 38.8 bits;  conditional E-value: 2.6e-13
         HMA   4 vsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62 
                 ++gm+Ca+C++k+++ L++l+ V+sv+v+l  ++  + +  + ++  ++ieaie+ gy+
  KKY22859.1 192 IQGMTCASCSGKITSELESLDFVSSVNVNLIGNSGIICYRGTRKDAGRLIEAIEDVGYE 250
                 78*****************************************99999*********96 PP

  == domain 3  score: 55.3 bits;  conditional E-value: 1.9e-18
         HMA   2 vrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62 
                 ++++gm+C++C++++++ L+elp V+sv++dl+ ++  Ve++ e+ +l+ i+e++e++gy+
  KKY22859.1 275 LSIEGMTCGACVGTITRGLQELPFVRSVTIDLVGNSGRVEYEKED-ELKLILEKLEDLGYD 334
                 679**************************************8888.5689**********7 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.0065
         HMA   1 tvrvsgmhCagCaakvekvL 20 
                 t+ ++gm C++C   +e ++
  KKY22859.1 357 TFVIDGMCCHHCPEVIEAAV 376
                 6779************9987 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   0.0   1.5e-29   5.5e-26       1     210 []     834    1134 ..     834    1134 .. 0.82

  Alignments for each domain:
  == domain 1  score: 92.2 bits;  conditional E-value: 1.5e-29
                  SSEEEEESBTTTBCHH....HHHHHHHHHH......CHHHHHHHHHH......HHCHHHHHHHHHHHHH...HHHH..HHHHHETTTE......... CS
                  xxxxxxxxxxxxxxxx....xxxxxxxxxx......xxxxxxxxxxx......xxxxxxxxxxxxxxxx...xxxx..xxxxxxxxxx......... RF
   Hydrolase    1 iktvvfDkdGTLttge....psvedvivsa......alalaaaletg......sehpigkalvaaakar...sgal..tgfatfigrg......... 67  
                  i++vvfDk+GTLt+g      ++e + +++        ++      +      s+hpi+k +v ++ +r   sg++  +++ ++ g+g         
  KKY22859.1  834 IDAVVFDKTGTLTEGGslkvTEHEVLAQENpedlatVFKM------AqvmeesSNHPIAKSIVDFCRDRiegSGQIvsSDINELGGQGmrakfnvki 924 
                  79***********999766656666666664444433444......3556666*****************99666678*****99999********* PP

                  .......HHHHTHHHHHHHH.....HCHHHHHHHHHHHHHHCHHHHHH............................TTHHHHHHHHHHTHHBHTTHH CS
                  .......xxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxx............................xxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   68 .......ayaigkpewltal.....dippdlgaaigsaqsqgrtvall............................qaralavftiadplkvkpeaa 124 
                         ++aig++++l +l          l+   +++q+ g++  +                             q + l vf+i+dp  ++p   
  KKY22859.1  925 kdeerqyEAAIGNQRLLSSLpsyntSKDVYLKPLLSKYQTLGHSTTMFalrrlhvtssqasdgqpandsdvsekssQFQPLIVFAISDP--IRPSSL 1019
                  ***************999997664322223444555555555555555899********************9999999***********..****** PP

                  HHHHHHHHT.TEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCES...STTTSHHHHHHHHHHHT.............................. CS
                  xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx.............................. RF
   Hydrolase  125 eavasLkaa.gievvlltgdnpetaeraanqlGddyfdaviasdiet...vakpspegkvaaireLq.............................. 187 
                   ++++L+++ +i + ++tgdn +ta+++a+qlG           i +    a  +p +k a i+eLq                              
  KKY22859.1 1020 PVLNALRDKyNIAIHMCTGDNATTAHAVASQLG-----------IPVsnvRANCLPADKAAYINELQgvfpaaakqesrspstdssnrttsslqsss 1105
                  *********************************...........44446678888888888888887777777777888888888888888888*** PP

                  ......STGGGEEEEESSHHHHHHHHHTT CS
                  ......xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  188 ......gkpeevamVGDgvnDaaalaaAg 210 
                        ++ + +a+VGDg nD +al a +
  KKY22859.1 1106 ytstvnASRRVIAFVGDGTNDTPALSASD 1134
                  **998877889**************9865 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       2.5   9.1e+03      31      55 ..    1030    1054 ..    1016    1060 .. 0.71
   2 !   17.7   0.0   6.4e-07    0.0023     198     245 ..    1109    1156 ..    1102    1161 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2.5
                   TSEEEEE-SS-HHHHHHHHHHCCCC CS
  Hydrolase_3   31 gikvviATGRslravlpvleelgld 55  
                   +i +  +TG + ++++ v+ +lg+ 
   KKY22859.1 1030 NIAIHMCTGDNATTAHAVASQLGIP 1054
                   6777778888888888888887764 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 6.4e-07
                   HCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE-- CS
  Hydrolase_3  198 elnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtks 245 
                   + n s+  ++ +GDg ND + L+a+++++A+ ++s+ ++  A+++  s
   KKY22859.1 1109 TVNASRRVIAFVGDGTNDTPALSASDVSIALSSGSDVAITTASFILLS 1156
                   566677777778*******************************99765 PP

>> PocR  Sensory domain found in PocR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00035       1.2       7      46 ..      20      59 ..      18      71 .. 0.91
   2 ?   -0.7   0.1      0.29     1e+03      24      69 ..      70     126 ..      63     132 .. 0.64
   3 ?   -2.8   0.0       1.3   4.8e+03      13      46 ..     865     897 ..     861     905 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00035
        PocR  7 klqklldsfseatglaivivdtdgepltepsnftdfCklv 46
                 +q++l+ f+ +t++ + i+ ++ ++l ++ + +dfC++ 
  KKY22859.1 20 HVQDVLEPFAGVTKVDVSILTDEVRILHSSYKAKDFCSVL 59
                689**********************************876 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.29
        PocR  24 vivdtdgepltepsnftdfC.klvrstp..........egrkrCrksdarggeeavk 69 
                  ++d+dg+ + e++  + f  + ++s++           + ++C ++++ ++++  +
  KKY22859.1  70 STYDPDGNLVEEYTPSHGFIsQRTQSKKwslfmswaqkSHIDNCDACQKDLAQQRKS 126
                 567777777777763344444555555555555555557788999999999876544 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.3
        PocR  13 dsfseatglaivivdtdgepltepsnftdfC.klv 46 
                 +++++++++a v+    ++p++++  + dfC + +
  KKY22859.1 865 EDLATVFKMAQVMEESSNHPIAKS--IVDFCrDRI 897
                 678899999999999999999988..579995555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       811  (0.045234); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.52
# Mc/sec: 7380.91
//
Query:       KKY22860.1  [L=599]
Description: putative dna repair protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-25   90.0   0.1    4.1e-25   88.8   0.1    1.7  1  ERCC4     ERCC4 domain


Domain annotation for each model (and alignments):
>> ERCC4  ERCC4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.8   0.1   2.3e-29   4.1e-25       1     156 []     311     462 ..     311     462 .. 0.87

  Alignments for each domain:
  == domain 1  score: 88.8 bits;  conditional E-value: 2.3e-29
                 EEGGGCT.SHHHH.....HHTTTSEEEEE--SSSSE.EE...CTT.............................EEEEEEEHHHHHHHHCCSHHHHHHH CS
       ERCC4   1 iDsrelk.sgieeyl...leelgvevvietlpigdyilwrrkvkaeynleldieepceek..............vlverksaddlvasikdgrleeqvs 81 
                 iD+re++ ++ ++y+   l++++++ ++++lp+gd  lw   v++ ++l+++       +              ++verk++ddl+ sikdgr++eq++
  KKY22860.1 311 IDNREIRsTHDRDYIseeLAKRDIKAITRSLPVGDA-LW---VAKLKELSPELL-----TsgdegvgkdeilldHIVERKRLDDLIGSIKDGRFHEQKF 400
                 8******88888888889******************.**...766555554333.....144444788******************************* PP

                 HHHH.H-SEEEEEEES-GGGTT................THHH.HHHHHHHHHHHHS-EEEEESSHHHHHHHHHHH CS
       ERCC4  82 rlkrngykkpillvegldqykrknknsrnkqykakvrqinrktiesaLvqlqldfgvsilttesanetaewlanl 156
                 rl+r+g k++++lve  + + ++      k        + ++ + sa++++q+  g++i++te   +t+++la++
  KKY22860.1 401 RLRRSGVKNVTYLVENITISDERQ----MK--------YGEA-VASAIASTQVVNGFFIKRTEKLDDTIRYLARM 462
                 ****************77777752....11........8898.*****************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.53
# Mc/sec: 3407.10
//
Query:       KKY22861.1  [L=91]
Description: hypothetical protein UCRPC4_g03061 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00022   20.6   0.2    0.00022   20.6   0.2    1.7  2  CHZ       Histone chaperone domain CHZ


Domain annotation for each model (and alignments):
>> CHZ  Histone chaperone domain CHZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1      0.34   6.1e+03      26      31 ..      37      42 ..      36      43 .. 0.64
   2 !   20.6   0.2   1.2e-08   0.00022       3      24 ..      50      69 ..      49      70 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.34
         CHZ 26 iDfaka 31
                iD  ka
  KKY22861.1 37 IDAEKA 42
                677766 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.2e-08
         CHZ  3 edeLeEIDtsNIIsgGRRTRgk 24
                +de e+ID sNI   G RTRg+
  KKY22861.1 50 ADENEAIDKSNIL--GERTRGA 69
                7889*********..******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      148  (0.00825478); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.55
# Mc/sec: 497.71
//
Query:       KKY22862.1  [L=650]
Description: putative transcription factor tfiiib complex subunit brf1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-20   71.3   4.5      7e-20   71.3   4.5    4.7  4  BRF1      Brf1-like TBP-binding domain
    2.9e-17   62.5   0.8    6.9e-17   61.3   0.1    2.0  2  TFIIB     Transcription factor TFIIB repeat
  ------ inclusion threshold ------
       0.11   11.2   6.6       0.24   10.1   6.6    1.5  1  MSP1_C    Merozoite surface protein 1 (MSP1) C-terminus
       0.45   10.3   3.6        2.1    8.1   3.6    1.9  1  OEP       Outer membrane efflux protein
        6.1    5.0   7.7        9.8    4.3   7.7    1.2  1  RAP1      Rhoptry-associated protein 1 (RAP-1)


Domain annotation for each model (and alignments):
>> BRF1  Brf1-like TBP-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.6      0.95   3.4e+03      44      44 ..     159     159 ..     117     242 .. 0.65
   2 ?   -1.1   0.8      0.67   2.4e+03      55      72 ..     264     294 ..     206     323 .. 0.59
   3 !   71.3   4.5     2e-23     7e-20       2     100 ..     356     496 ..     355     497 .. 0.78
   4 ?   -0.5   1.4      0.43   1.5e+03      35      72 ..     514     535 ..     501     563 .. 0.39

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.95
        BRF1  44 e 44 
                 e
  KKY22862.1 159 E 159
                 0 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.67
        BRF1  55 kkkkrkrkkkekkkgep..............e 72 
                 ++ kr+ ++k +k+++p              e
  KKY22862.1 264 PR-KRRGRPKGAKNKRPmpvsgaelaleaaiE 294
                 33.33344444444444455555444443330 PP

  == domain 3  score: 71.3 bits;  conditional E-value: 2e-23
        BRF1   2 diddd.eideyllseeevkiKeriWvelnkeyLeeqeekrlkeeaeeae......................adkkkkkkkrkrkkkekkkgep...... 71 
                 +++dd e+ ++lls++e++iKeriWv++n+ +L+eq++kr +++ ++                        +                    p      
  KKY22862.1 356 EFEDDpEVANCLLSPAEREIKERIWVHENNTWLREQHRKRIQAQLKQTDpslqsqagqgsrtrktrrprlgD--------------------Pkylkkd 434
                 577777****************************************99999988776554433333333320....................1122223 PP

        BRF1  72 .................................etaaeavkkmlekkklskkINydaLekLf 100
                                                  + a+ avk+mle++++s++INy+++++Lf
  KKY22862.1 435 nkeagadhadadgdqtqnadpdnpdetgmndseRAAGRAVKSMLENRAYSTRINYNVMQTLF 496
                 34455556666777788888999999999999888899***********************9 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.43
        BRF1  35 eqeekrlkeeaeeaeadkkkkkkkrkrkkkekkkgep...e 72 
                 e+++kr++ + +e +++                        
  KKY22862.1 514 EKARKRERLADQESRSQ-------------------TsdsM 535
                 22233333322222211...................11221 PP

>> TFIIB  Transcription factor TFIIB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.1   1.9e-20   6.9e-17       1      71 []      20      93 ..      20      93 .. 0.96
   2 ?   -1.8   0.1      0.94   3.4e+03      16      40 ..     468     492 ..     467     494 .. 0.85

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 1.9e-20
                HHHHHHHTT--H...HHHHHHHHHHHHHTTSTTTTSGCTTHHHTTHHHHHHTTTTSS--HHHHHHHSS--SHHH CS
       TFIIB  1 ikrfadaleLpe...kVadaAkelaklaleekvlkGrspagiaAAclyiAcrkeevkrtqkeissvlqVsekti 71
                i rfa  le+      +  +A+ +++++++++++ Gr+pagi +A+l iA+r+++++rt +e++ v++V+e ti
  KKY22862.1 20 ILRFARSLEFGRdtnRIVTEATRIVQRMKRDWMVTGRRPAGICGAALIIAARMNNFRRTVREMVYVVKVTEITI 93
                5699******9888899******************************************************997 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.94
                 HHHHHHHHHHTTSTTTTSGCTTHHH CS
       TFIIB  16 daAkelaklaleekvlkGrspagia 40 
                 +aA  ++k +le++ ++ r + +++
  KKY22862.1 468 RAAGRAVKSMLENRAYSTRINYNVM 492
                 7999*********999988877776 PP

>> MSP1_C  Merozoite surface protein 1 (MSP1) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   6.6   6.6e-05      0.24     256     349 ..     534     627 ..     518     638 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 6.6e-05
      MSP1_C 256 ellPkvstseaavttavtadaavpdatPeglsvrgagvsGavkeetpepvagsvasgltelqvvvklqdydeeedkvvalslvddnedddeidq 349
                  + P  ++s+a +tt+ +      + +P++  + +a ++  +k ++ +p+ +s     ++ +    l + +e++++ v   +++d +ddd++d 
  KKY22862.1 534 SMAPSRAASPAVSTTSSSSTLDATRRAPHSPVAASAPSPSITKRSASTPPQQSSEENDADVEARGTLGQEQEDDESDVDVNIMGDMDDDDDEDE 627
                 5678888999999999887777778888887667777788888888888888865555666666778888999999999999999999887664 PP

>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.6   0.00058       2.1      26     111 ..     393     532 ..     388     536 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00058
         OEP  26 eanlkaakaeflPtlslsgsygyegngsegggddggtgtt.....................................................svgltl 71 
                 + +++a+ ++++P+l+ +++ g+++ +++ +  +++                                                         +++ ++
  KKY22862.1 393 RKRIQAQLKQTDPSLQSQAGQGSRTRKTRRPRLGDPKYLKkdnkeagadhadadgdqtqnadpdnpdetgmndseraagravksmlenraystRINYNV 491
                 788999999999999999999999999888877766666699999999999999999999999999999999999************************ PP

         OEP  72 sqplfdg.gkrrarvkaakaqleaaeaqleqarqqlrleva 111
                  q+lf g  +r+++v++ +++ e+a+ + + a q+ r++++
  KKY22862.1 492 MQTLFPGmMARESSVESRRSMDEKARKRERLADQESRSQTS 532
                 ***********************************999986 PP

>> RAP1  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   7.7    0.0027       9.8      47     176 ..     483     612 ..     474     618 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0027
        RAP1  47 swtrlddkeflnsyedkvsdesfleskaskedGninltdtsesndaskkGsGksrvrsasaaaileeddskddlefkasqsvvktskpkststeslkss 145
                 + tr++ + +   +   ++ es +es+ s+++   +    ++++  s++ +  +  r+as a+      s  d   +a +s v +s p+ + t+  +s+
  KKY22862.1 483 YSTRINYNVMQTLFPGMMARESSVESRRSMDEKARKRERLADQESRSQTSDSMAPSRAASPAVSTTSSSSTLDATRRAPHSPVAASAPSPSITKRSAST 581
                 66777777777778888999************999999999999999999999999******************************************* PP

        RAP1 146 sdskskasaksnvksaskyGesssseesatd 176
                  + +s+    ++v +    G+ +  +es +d
  KKY22862.1 582 PPQQSSEENDADVEARGTLGQEQEDDESDVD 612
                 *********************9999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1334  (0.0744046); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.48
# Mc/sec: 4090.32
//
Query:       KKY22863.1  [L=372]
Description: putative phd finger domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-09   37.0   5.3    4.5e-09   36.1   5.3    1.5  1  PHD          PHD-finger
    0.00025   20.7   0.4    0.00055   19.6   0.4    1.6  1  zf-PHD-like  PHD/FYVE-zinc-finger like domain
  ------ inclusion threshold ------
      0.033   14.1   5.7      0.034   14.0   2.3    2.2  2  C1_1         Phorbol esters/diacylglycerol binding domain (C1
       0.18   12.0   1.4       0.28   11.4   1.4    1.3  1  FYVE_2       FYVE-type zinc finger
        0.2   11.3  11.8      0.098   12.2   7.8    2.5  2  PHD_2        PHD-finger
        1.3    9.1   6.2         10    6.3   6.2    2.1  1  DUF3716      Protein of unknown function (DUF3716)


Domain annotation for each model (and alignments):
>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   5.3   1.5e-12   4.5e-09       2      51 ..     154     206 ..     153     207 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 1.5e-12
                 BTTTTS.TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSS..TBSSTTTHT CS
         PHD   2 CavCkk.ksdeeeelvqCdgCkrwfHqkClkppleseekpeg..ewlCekCke 51 
                 C+ C + +   ++ +v+CdgC+r+ Hq+C+ p   ++ + ++  +w+C +C+ 
  KKY22863.1 154 CEHCLRgNGPLGNAIVFCDGCNRAWHQNCHVPRIIKDVVVNSsrSWYCAECSV 206
                 99****88888**********************99998888889*******85 PP

>> zf-PHD-like  PHD/FYVE-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.4   1.8e-07   0.00055       1      70 [.     154     222 ..     154     258 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.8e-07
  zf-PHD-like   1 CdtCaeskdeekgqlvyCqGCslsyhkaClGkRsaRehlvtkvgedsFvlqCrrCiglakkkdklapkld 70 
                  C+ C   +     ++v+C GC  ++h++C  +R  ++ +v   ++  +   C +  g+  kk k  p++ 
   KKY22863.1 154 CEHCLRGNGPLGNAIVFCDGCNRAWHQNCHVPRIIKDVVVN-SSRSWYCAECSVSAGTPLKKKKGPPRKI 222
                  99999999888889*******************99987665.5677888888888888888888877765 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   2.3   1.1e-05     0.034      10      43 ..     150     183 ..     144     186 .. 0.89
   2 ?    0.6   0.1      0.18   5.3e+02      26      36 ..     196     206 ..     189     208 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
                 S--B-TTT-SB--S.SSS-EEEETTT--EE-CCCC CS
        C1_1  10 qptfCkhCgeflwg.kekqglkCswCkllvHkkCh 43 
                 q   C+hC     g ++  ++ C+ C++  H++Ch
  KKY22863.1 150 QNILCEHCLRGN-GpLGNAIVFCDGCNRAWHQNCH 183
                 556799999999.88*******************9 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.18
                 S-EEEETTT-- CS
        C1_1  26 kqglkCswCkl 36 
                 ++ + C++C++
  KKY22863.1 196 SRSWYCAECSV 206
                 67788999976 PP

>> FYVE_2  FYVE-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.4   9.5e-05      0.28      53     103 ..     150     207 ..     129     217 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.5e-05
      FYVE_2  53 gethCilCleefkllvnskrqCldCklnvCkkCsve.......nkkekvwlCkiCsea 103
                 ++  C +Cl+  + l n  + C+ C+    ++C v         ++ + w C+ Cs +
  KKY22863.1 150 QNILCEHCLRGNGPLGNAIVFCDGCNRAWHQNCHVPriikdvvVNSSRSWYCAECSVS 207
                 345799999999*********************998899998888899*******975 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.71   2.1e+03      30      35 ..     152     157 ..     145     158 .. 0.58
   2 ?   12.2   7.8   3.3e-05     0.098       2      35 ..     166     204 ..     165     205 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.71
       PHD_2  30 WlCrrC 35 
                  lC+ C
  KKY22863.1 152 ILCEHC 157
                 455555 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 3.3e-05
       PHD_2   2 npllsCdkCsvaVHasCYGvskesdgee.....WlCrrC 35 
                 n +++Cd+C+ a H++C   + ++d +      W+C+ C
  KKY22863.1 166 NAIVFCDGCNRAWHQNCHVPRIIKDVVVnssrsWYCAEC 204
                 89***************9654444433333566****** PP

>> DUF3716  Protein of unknown function (DUF3716)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.2    0.0034        10       6      51 ..     145     208 ..     141     212 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0034
     DUF3716   6 ltGeeapepCtrCrrgkgpFeeCvvv..................easekakllkgaCanClygk 51 
                 + G+ ++  C++C rg+gp  + +v+                  ++   +++ ++ Ca C +++
  KKY22863.1 145 AKGKDQNILCEHCLRGNGPLGNAIVFcdgcnrawhqnchvpriiKDVVVNSSRSWYCAECSVSA 208
                 678888889****99977766666666666666777777779999999999999******8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2422.81
//
Query:       KKY22864.1  [L=488]
Description: putative allantoin transport [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-66  223.1  34.4    7.7e-66  222.7  34.4    1.2  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.7  34.4   4.3e-70   7.7e-66      80     439 ..      37     410 ..      10     411 .. 0.96

  Alignments for each domain:
  == domain 1  score: 222.7 bits;  conditional E-value: 4.3e-70
  Transp_cyt_pur  80 sfGirgsllplllrvviaivwfgvqawiGsealllmlgkifgk.wleigg...ailgtsltelvtffifwvvslvivllgvskirkffviaallv 170
                     +fG +gs+  +  r+ +aivw+gvq ++G++ +++ml+ ifg+  + i++   a++g++  ++++ff fw++++ + ++ + +++kff ++ +++
      KKY22864.1  37 VFGLWGSFYFVGARAALAIVWYGVQLYTGASYMANMLRAIFGHyYTDIPNhipASVGITSSGMLAFFLFWLLHFGFCFFRPYQLKKFFWFKGFII 131
                     7*******************************************999999999****************************************** PP

  Transp_cyt_pur 171 pvaafgfliwalvkaeg..Gpvldkavklgkse.lflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaaka 262
                      +a fg+ i+ +v+++g  G+ l  a+  g +   f+ a+++ +++ atli+n pD +r+ ktk   + +++++ p+++t+++ +gil +aa   
      KKY22864.1 132 FPAVFGLFIFCMVNTHGkiGGALPTATYTGGMGwFFMHAINSGMGNSATLITNQPDIARWSKTK-LGATTATIVQPVAVTVSATFGILATAAINN 225
                     *******************88888887777677799************************9876.5566889999******************** PP

  Transp_cyt_pur 263 ayganawspldilakfdet.......agvllililvalaqlgvnisanllsagldlaallPkkinikrgsliaavialvivpwkllssssklfta 350
                     a g + w+p d+l  + +        ++++l +++   + lg+ni+an++++g d a l P++i +krg +i+  ++ +i+pwk l+s+++ ft+
      KKY22864.1 226 AWGLSLWNPWDLLDAIMDRywsggarFAIFLCALTWTASILGTNIAANMIPFGADSAMLWPRYIDMKRGFFIVEFLGFAICPWKILASAAT-FTT 319
                     ****************9999***********************************************************************.*** PP

  Transp_cyt_pur 351 flsllavflspvagviiadyfvvrrgylklaalytrr.rgsaYwyrkgvNwravaayivGiaaglvgvagsvg.ikvvkgaeklfdlsylv 439
                     fls ++ f+ +v+++++adyf++  g++ +  ly+ +  +  Y+y  g+N++a++ayivGia+ ++g+  s g   v++g + +f +++++
      KKY22864.1 320 FLSGYGLFMASVVAIMVADYFFINNGNVFVPFLYDPSkTNPHYYYHRGWNVQALIAYIVGIALPFPGFCWSLGaTGVSPGGQHMFEMGWIL 410
                     ***********************************8735667899*************************999999*********999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 3077.47
//
Query:       KKY22865.1  [L=520]
Description: putative ubiquitin-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-13   51.0   0.0    4.2e-13   50.0   0.0    1.5  1  PhyH       Phytanoyl-CoA dioxygenase (PhyH)
     0.0075   16.9   0.0      0.017   15.8   0.0    1.6  1  YukD       WXG100 protein secretion system (Wss), protein Yuk
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.026   14.3   0.0    1.4  1  ubiquitin  Ubiquitin family


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   7.1e-17   4.2e-13       2     210 ..      39     252 ..      38     253 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 7.1e-17
                 HHHSEEEETTSS-HHHHHHHHHHHHHHHHHCHTTCCSEEEEECEEESTTCCCEECCCHHCHHHHTTHHHHHHHHHHHHTSCEEEEEEEEEEEEEEEE-T CS
        PhyH   2 eedGylviegflsaeevealraeiealldralesgdkidfffeekaaadedglleksinkvghflhprkvadlvrailgqdvyvaavlqsmyqdifkqp 100
                 ++dG++v++++++ + ve+l++ +   + +++ ++++i+f+   k +  +  +l ks+ +++++   + + +++ a lg ++     +++m    + + 
  KKY22865.1  39 HQDGFVVLKSVVNVSHVEKLNDYVCG-EVDRRLAEEEIIFNHGVKSNLLQPTPLAKSELLFDDVYFNPFLIQVANAYLGTKPT----WNFMT--GNVAL 130
                 89********************9877.46888888999999999999998888877777776655442555555555555553....77877..56665 PP

                 TTCB-EEEEE-SGGGSTEESGCCEEEEEEESS-B-TTBT-EEEETTGGGS-CCGTCCHHCSGCCTTS.............CCCTTTGHGSCEEEE.BTT CS
        PhyH 101 kiGgevqpwHqDstflptdpeesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteae.............ddeakkedeeeavpvevka 186
                 +  g  qp+H D +  +    + +  + + l+d+++ nG + f  GSH    ++ + +++ d++e+              d  +k++++++ ++ ++++
  KKY22865.1 131 GNTGLRQPVHKDVAAPHPA-CPFFFIANFPLCDFNPGNGSTEFWLGSHAHTTIDDQVHVTLDSEEHAggkcsrpicdiqlDILDKRRKTRPPIQPTCEK 228
                 5555559*******99944.589999**********************************99999999***********98899999999********* PP

                 TEEEEEETTSEEEE-TB.SSSXEE CS
        PhyH 187 GdavlfhgrllHgsgaNrsdksRr 210
                 Gd+++ + r++H++ +N+s++ R 
  KKY22865.1 229 GDIMIRDLRTWHAGMPNSSERHRA 252
                 ********************9986 PP

>> YukD  WXG100 protein secretion system (Wss), protein YukD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.8e-06     0.017      43      74 ..     481     512 ..     466     514 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.8e-06
                 --TT-EEEEGGGEEEETTSBCGGGT--TT-EE CS
        YukD  43 rpggwsLarvggapLsgdrtLaeagVrDGdlL 74 
                 +p +  L+r g++p++++ tL+++gV +G  L
  KKY22865.1 481 QPHEILLKRQGERPFKDQLTLEDYGVSNGVQL 512
                 566788***********************877 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.3e-06     0.026      17      67 ..     463     514 ..     448     518 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.3e-06
                 TTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE.-TTSBHGGHTTSTTEEEEE CS
   ubiquitin  17 esdtveelKekiaekegipaeqqrLiysGkvL.edertleeygiqdgstlhl 67 
                  sd ++ +K+++a++ g +++++ L  +G++  +d++tle+yg+ +g +l l
  KKY22865.1 463 ASDPIRLFKAQVAARIGRQPHEILLKRQGERPfKDQLTLEDYGVSNGVQLDL 514
                 6888999**********************7655**************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       841  (0.0469072); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 3124.35
//
Query:       KKY22866.1  [L=451]
Description: putative ribose-phosphate pyrophosphokinase i [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-43  146.5   1.4    1.2e-37  129.7   0.5    2.3  2  Pribosyl_synth  Phosphoribosyl synthetase-associated domain
    1.1e-34  118.9   0.0    5.4e-34  116.6   0.0    2.0  2  Pribosyltran_N  N-terminal domain of ribose phosphate pyropho
    4.4e-14   52.3   0.1    8.3e-14   51.4   0.1    1.4  1  Pribosyltran    Phosphoribosyl transferase domain
  ------ inclusion threshold ------
      0.034   13.6   0.1      0.055   12.9   0.1    1.2  1  UPRTase         Uracil phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> Pribosyl_synth  Phosphoribosyl synthetase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.5e-06    0.0068       1      41 [.     292     332 ..     292     338 .. 0.91
   2 !  129.7   0.5   2.7e-41   1.2e-37      68     183 ..     333     448 ..     329     449 .. 0.96

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.5e-06
                     TGGGEEEEESSGGGHHHHHHHHHHTT-EEEEE--------- CS
  Pribosyl_synth   1 dyrnavivakspgsakkatsyaerlrlglavihGeqkeaea 41 
                     d++ a++v+ + g ak+at+ a+ l +  a+ih e++ +  
      KKY22866.1 292 DFKSAIVVSPDAGGAKRATAIADSLGMEFALIHKERRPTRI 332
                     89*********************************987655 PP

  == domain 2  score: 129.7 bits;  conditional E-value: 2.7e-41
                     ---------EES--TTSEEEEEEEEE-S-HHHHHHHHHHHHTT--EEEEEEEEE---TTHHHHHHHSS--EEEEESSS--HHHHHT-TTEEEE-- CS
  Pribosyl_synth  68 lakekppltvvGdvgGriaiivddliddvesfvaaaevlkerGaykiyvlathGllssdaprlleesaidevvvtntipheiqklrcskiktvdi 162
                     + ++   + +vGdv+G+ ai++ddl d  +++  aa++lk+ Ga ++y+l+thG+ls da +++++sa+d+vvvtn++ ++ ++ rc k++ +d+
      KKY22866.1 333 TERQNATMMLVGDVAGKTAILIDDLADTSNTITRAAKLLKKEGASRVYALITHGILSGDAIERINASALDKVVVTNSVSQHEHQKRCPKLEVLDV 427
                     56788899************************************************************************999************ PP

                     HHHHHHHHHHHHHT---TT-S CS
  Pribosyl_synth 163 slllaeairrihngesmsylf 183
                     s ++aeairr+h+ges+s lf
      KKY22866.1 428 SHVFAEAIRRVHYGESISALF 448
                     ********************9 PP

>> Pribosyltran_N  N-terminal domain of ribose phosphate pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.6   0.0   1.2e-37   5.4e-34       2      96 ..       6     100 ..       5     113 .. 0.96
   2 ?   -1.0   0.0      0.37   1.7e+03      37      84 ..     338     381 ..     306     389 .. 0.58

  Alignments for each domain:
  == domain 1  score: 116.6 bits;  conditional E-value: 1.2e-37
  Pribosyltran_N   2 kifagssskeLaekiakrlgvelgkakvsrfadgEikveieesvrgkdvfiiqslskpvndnlmelllmidalrrasakritaViPylgysrqdr 96 
                     +++ gss+++L e+i+++l ++lg++ +s+fa gE++vei+esvrgkdv+iiqs   +vnd+lmell+ i+a+++asa+++taV+P+++ysrq+ 
      KKY22866.1   6 VVLGGSSHPQLNEAICEHLSLPLGNCLLSKFAVGETRVEIHESVRGKDVYIIQSGGGKVNDHLMELLIAISACKTASASKVTAVLPIFPYSRQSD 100
                     7899*****************************************************************************************75 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.37
  Pribosyltran_N  37 ikveieesvrgkdvfiiqslskpvndnlmelllmidalrrasakrita 84 
                     + + +  +v gk+ ++i +l++  n+    +++ ++ l++  a+r+ a
      KKY22866.1 338 ATMMLVGDVAGKTAILIDDLADTSNT----ITRAAKLLKKEGASRVYA 381
                     34444457788888888777766543....445555556666666655 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.1   1.8e-17   8.3e-14      28     124 ..     293     385 ..     276     417 .. 0.84

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 1.8e-17
                   GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSEEEEEEEE CS
  Pribosyltran  28 gkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgTllaalelLkekgpeevriavlv 124
                   +k  +vv ++ gG  +a+++ad L+ ++a + k+++ +  +e +  +++    l +d+agk+ +++DD+ dt +T+++a++lLk++g+ +v +   +
    KKY22866.1 293 FKSAIVVSPDAGGAKRATAIADSLGMEFALIHKERRPTRITERQNATMM----LVGDVAGKTAILIDDLADTSNTITRAAKLLKKEGASRVYALITH 385
                   67779*********************************99999999998....9**********************************988665555 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.2e-05     0.055     113     185 ..     340     412 ..     311     420 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.2e-05
     UPRTase 113 nkLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvlaseegvkrlaeefpkvkvvtaavDe 185
                   L  ++a +t++l+D +  T++++  a +lLk++g+     l+   + s  +++r+ ++  +  vvt +v +
  KKY22866.1 340 MMLVGDVAGKTAILIDDLADTSNTITRAAKLLKKEGASRVYALITHGILSGDAIERINASALDKVVVTNSVSQ 412
                 45667788899*************************99888899999*********99999877788777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3064.47
//
Query:       KKY22867.1  [L=364]
Description: putative vacuolar atp synthase subunit d [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.9e-108  361.9   0.0   4.4e-108  361.8   0.0    1.0  1  vATP-synt_AC39  ATP synthase (C/AC39) subunit


Domain annotation for each model (and alignments):
>> vATP-synt_AC39  ATP synthase (C/AC39) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.8   0.0  2.5e-112  4.4e-108       1     336 []      13     360 ..      13     360 .. 0.94

  Alignments for each domain:
  == domain 1  score: 361.8 bits;  conditional E-value: 2.5e-112
                     HHHHHHHHGGGS--HHHHHHHTTS.-HHHHHHHHHTSGGGGG--.....SSSHHHHHHHHHHHHHHHTTTGGGGS-H.HHHHHHHHHHHHHHHHH CS
  vATP-synt_AC39   1 leArvramrsglLteedyenLlqcesledvkryLketdYgnfladelseplsrsdiekalreklarefnklreqapgpsrefldyllyrydidNv 95 
                     le+++r++r+ lLt ++y nL+qces++dvk++L  + Yg+fla+ ++ + s+s++ +++++kl+++f+++r+qa+g++ +f+dyl+y+y+idNv
      KKY22867.1  13 LEGIIRGYRNALLTSQNYGNLTQCESIDDVKLQL-GPAYGDFLASLPP-KPSTSALAQKATDKLVSDFKYIRAQATGSLAKFMDYLTYGYMIDNV 105
                     689*******************************.589*********9.5667*************************55*************** PP

                     HHHHHHHHH.T--GGGS-..--.S..S.SS-HHHHHHHHHSSSHHHHHHHHH.T-HHHHHHHH.H....HCC...--SHHHHHHHHHHHHHHHHH CS
  vATP-synt_AC39  96 klllrgklsgdldleeleeklhpl..g.elsaldldklieaksveelyeall.gtpyakylee.a....ldeleetgdleiienaLdkayledll 181
                      ll++g+l++ +d +el+e++hpl  + +++ l++     a+++eely+++l +t +a++++  +    ldel++    ei++n+L+k+yled++
      KKY22867.1 106 ALLITGTLHE-RDTRELLERCHPLgwFeTMPVLCV-----ATNIEELYNSVLiETSLAPFFKGsLshqdLDELNI----EIVRNTLYKNYLEDFY 190
                     *********6.666************88*******.....***********************66*9999999*9....**************** PP

                     HHHHT....SS-HH...HHHHHHHHHHHHHHHHHHHTTTSS......T...--SS-S--HHHHHHHHTT-G.....GG..GGSSTSSTTGGGTT- CS
  vATP-synt_AC39 182 kfckk....lggetaeilreilgfeiDlrniniilrskkygelskedrkkllipggslypeglealaeaedveellaal.kyteygelleealee 271
                     +f+++    ++++t+e+++eil+fe+D+r+ini+++s++ ++lsk+drkk+++++g+lypeg+ +l++a+dve +  a+  +++y+ +++++  +
      KKY22867.1 191 NFVNNdpdmKDSPTSEVMSEILEFEADRRAINITINSFG-TDLSKQDRKKMYPEFGKLYPEGMLMLSRADDVEGVALAVsGNSDYKAFFDQVGLN 284
                     **55423325599**************************.9*************************************************66544 PP

                     ...........-S..HHHHHHHHHHHHHHHHHTTTSSSTSTHHHHHHHHHHHHHHHHHHHHHHHHHHT--SHHHHGG CS
  vATP-synt_AC39 272 ...........ags.lksledaldealvkllkkafrqqfsvgvfyaYlklkeqEirnlrwIaegiaqglpkekIrey 336
                                + s  ksled++++ +++l+k  f+ qf+ +v+y++lkl+eqEirn++wIae+iaq+ +ke+I +y
      KKY22867.1 285 qsggagnmsggTASdGKSLEDLFYQKEMELAKLVFTRQFTHAVVYGWLKLREQEIRNITWIAECIAQN-QKERIGNY 360
                     799********5555*****************************************************.*****886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2437.73
//
Query:       KKY22868.1  [L=624]
Description: putative nucleolar protein nop58 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-81  272.9   0.1      2e-81  272.9   0.1    1.9  2  Nop       snoRNA binding domain, fibrillarin
    1.2e-22   80.0   4.5    1.2e-22   80.0   4.5    2.5  2  NOP5NT    NOP5NT (NUC127) domain
  ------ inclusion threshold ------
      0.068   13.9   0.1         18    6.1   0.1    2.9  2  HWE_HK    HWE histidine kinase


Domain annotation for each model (and alignments):
>> Nop  snoRNA binding domain, fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.9   0.1   3.3e-85     2e-81       1     228 [.     171     408 ..     171     410 .. 0.92
   2 ?   -2.3   0.4      0.41   2.5e+03      60      82 ..     479     499 ..     456     551 .. 0.54

  Alignments for each domain:
  == domain 1  score: 272.9 bits;  conditional E-value: 3.3e-85
                 HHHHHHHHHHHHHHHHHHHHTTTSTCHHHHS-SHHHHHHHHHHCCCCHCCT.HHTT.HH..HHHHHHHHHHCHHHH-SSS-S-HHHHHHHHHHHHHHHH CS
         Nop   1 lldeidkeintlhkrvrewYswhFpELeslvkdnleYakvvkligneredlekkeedee..lakevimaakvtastsmgaelseedlknikelcdrvle 97 
                 lld++dke+nt+++rv+ewY+whFpE++++++dnl+Yakvv ++g  r++ e+++      l++e+  a+k++a+ smg+e++eedl+ni++l+++v+ 
  KKY22868.1 171 LLDDLDKELNTYAMRVKEWYGWHFPEMAKILNDNLAYAKVVLKMG-MRTNWETVDL--AdiLPEEIETAVKHAADRSMGTEITEEDLDNIQALAEQVVG 266
                 689******************************************.99**987743..335************************************** PP

                 HHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHSSHHHHHCS-HHHHTTTT-HHHHCCCHH.T---SSSCHHHCSHHHHHTS-CCCHHHHHHH CS
         Nop  98 leelrkelleYlesrmsaiAPNlsaLvGeevaarLishaGgLtnLakmPastiqilGaekalfralk.kkntpkyGliyhselvqkatppklkkkiaRl 195
                 ++e+r++l++Yl+ rm+aiAPNl+aLvG+ v+arLi+haG+L nL+k PastiqilGaekalfralk k++tpkyGliyh++l+++a + k+k+k+aR+
  KKY22868.1 267 FTEYRQQLASYLTARMTAIAPNLTALVGDLVGARLIAHAGSLVNLSKSPASTIQILGAEKALFRALKtKHDTPKYGLIYHASLIGQA-TGKNKGKMARV 364
                 *******************************************************************888***************77.99********* PP

                 HHHHHHHHHHHH...........HTT----SHHHHHHHHHHHHH CS
         Nop 196 laaKvalaaRiD...........afsekdgslGkklreeiekkl 228
                 laaK+a+  R+D             +e++++lG + r  +e+kl
  KKY22868.1 365 LAAKAAIGLRVDalqdwgedeasIPEEEKAALGLEARYRLERKL 408
                 ************88877777653122233777888887777776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.41
                 HHHHHHHHHHCHHHH-SSS-S-H CS
         Nop  60 lakevimaakvtastsmgaelse 82 
                 l +ev++a+    + +m++ +s+
  KKY22868.1 479 LVEEVKEATPE--DVTMENGVSD 499
                 22222222222..1122222222 PP

>> NOP5NT  NOP5NT (NUC127) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   4.5     2e-26   1.2e-22       1      65 []       4      67 ..       4      67 .. 0.99
   2 ?   -3.7   1.0       2.7   1.6e+04      16      32 ..     470     484 ..     466     488 .. 0.50

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 2e-26
      NOP5NT  1 fiLfEtaaGYaLfkvkdkkllkkddlvkdsvsdlekfsklvkLkaFqkFesaaeALenanaiseG 65
                f+L+Et+aGYaL+k+kdkkllk+ddl+++  s++e + +l+kLk+FqkF+saa ALe+a+ai+eG
  KKY22868.1  4 FVLTETSAGYALLKAKDKKLLKQDDLAEK-ASTAEGVTNLLKLKSFQKFDSAAAALEEAAAIVEG 67
                9****************************.**********************************9 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.7
      NOP5NT  16 kdkkllkkddlvkdsvs 32 
                 k++k+ kk +lv++ v+
  KKY22868.1 470 KKEKKEKK-KLVEE-VK 484
                 33333333.46666.54 PP

>> HWE_HK  HWE histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0      0.01        61      48      75 ..     215     242 ..     203     247 .. 0.82
   2 ?    6.1   0.1     0.003        18      11      43 ..     255     287 ..     253     313 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.01
                 HHHCTTS-EEHHHHHHHHHHHHHHHSTT CS
      HWE_HK  48 lsreewagaeLaelleeelapyedease 75 
                  +r++w++++La++l ee++   ++a++
  KKY22868.1 215 GMRTNWETVDLADILPEEIETAVKHAAD 242
                 5799**************9988776655 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.003
                 HHHHHHHHHHSSSXS-HHHHHHHHHHHHHHHHH CS
      HWE_HK  11 avvqsiarqtlrsaesleefaeklsgRLqALsa 43 
                   +q++a+q +  +e  +++a  l++R++A++ 
  KKY22868.1 255 DNIQALAEQVVGFTEYRQQLASYLTARMTAIAP 287
                 579***************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2007  (0.111942); expected 358.6 (0.02)
Passed bias filter:                      635  (0.0354175); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.51
# Mc/sec: 3681.26
//
Query:       KKY22869.1  [L=241]
Description: hypothetical protein UCRPC4_g03069 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00014   22.2   0.0       0.01   16.1   0.2    2.4  2  RNA_pol_Rpb4   RNA polymerase Rpb4
  ------ inclusion threshold ------
      0.046   13.8   0.7      0.078   13.1   0.7    1.3  1  Orthopox_F7    Orthopoxvirus F7 protein
      0.049   13.1   0.7      0.078   12.4   0.7    1.2  1  DUF4607        Domain of unknown function (DUF4607)
      0.078   13.5   0.7       0.26   11.8   1.0    1.7  2  DUF4844        Domain of unknown function (DUF4844)
       0.14   12.9   0.1        0.2   12.4   0.1    1.2  1  ATC_hydrolase  L-2-amino-thiazoline-4-carboxylic acid hydrola


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb4  RNA polymerase Rpb4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.022        79      40      87 ..      67     144 ..      33     147 .. 0.73
   2 !   16.1   0.2   2.9e-06      0.01      91     121 ..     183     213 ..     176     215 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.022
                   HHCHHHHHHHHHHHC................THHTTSSHHH..HHHHHHHHTTST.............STHHHHHHHHH CS
  RNA_pol_Rpb4  40 nlnkilkktleyltn................kfsrlkneek..fnelvellksfe.............LtkaEklqlvn 87 
                   + ++i+k+  +yl++                + s ++++ +   +++++ l  ++             Ltk E+l+++ 
    KKY22869.1  67 GYRTITKEINSYLRDivpwideypgleyggrNSSDTDSK-TswLETVIQILGGTSndpstpegkqaygLTKGEVLMILE 144
                   557888888889998888888899998888544444433.347999999999444445555666666699999999976 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 2.9e-06
                   SSHHHHHHHSTTGTTTSTSHHHHHHHHHHHH CS
  RNA_pol_Rpb4  91 esavelktlieeleerfedeqleeiLdelke 121
                   +++  l++++eel+erf de++ ++L  ++e
    KKY22869.1 183 SDTQVLHAVVEELNERFGDEEIADMLRRVRE 213
                   67888*********************99987 PP

>> Orthopox_F7  Orthopoxvirus F7 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.7   2.2e-05     0.078      25      76 ..     165     216 ..     154     219 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.2e-05
  Orthopox_F7  25 eeeregyydyknlndldeaearvefgplyiineeksdintldikrryrhaie 76 
                  +ee+e +++   l+++d ++++v    +  +ne   d +  d+ rr r  +e
   KKY22869.1 165 NEEEEECVNPSALEEMDASDTQVLHAVVEELNERFGDEEIADMLRRVREIVE 216
                  4667889*****************************************9998 PP

>> DUF4607  Domain of unknown function (DUF4607)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.7   2.2e-05     0.078      13      58 ..     151     198 ..     147     203 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.2e-05
     DUF4607  13 iiPrspvstasfeeesygearpsptsssetdeap..liftvreeikkr 58 
                 +iPrs++s++ +++++++e++  p++  e+d ++  ++ +v ee+++r
  KKY22869.1 151 TIPRSDASEEPSNDNEEEEECVNPSALEEMDASDtqVLHAVVEELNER 198
                 79************************9999865411678888888876 PP

>> DUF4844  Domain of unknown function (DUF4844)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.6   1.3e+04      82     101 ..      99     118 ..      93     123 .. 0.60
   2 ?   11.8   1.0   7.4e-05      0.26      31      87 ..     169     225 ..     156     228 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.6
     DUF4844  82 tEdrerildYmeelmdivkl 101
                 + d +   +++e + +i++ 
  KKY22869.1  99 SSDTDSKTSWLETVIQILGG 118
                 55666666666666666654 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 7.4e-05
     DUF4844  31 ddklrvalekkiNevakklleavsenlteeklqkklkltlerldkqylelDtEdrer 87 
                 ++ + +++ +++    +++l+av+e+l+e++  ++++  l r+ +   e  tE++e+
  KKY22869.1 169 EECVNPSALEEMDASDTQVLHAVVEELNERFGDEEIADMLRRVREIVEEARTEEQEK 225
                 556778899999999***************************************997 PP

>> ATC_hydrolase  L-2-amino-thiazoline-4-carboxylic acid hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   5.5e-05       0.2       5      52 ..     184     231 ..     180     239 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.5e-05
  ATC_hydrolase   5 eaailvalyealkkeigkeeakeiirkalerlg.kergkklaekakakk 52 
                     +++l a++e+l++++g+ee+ +++r++  ++  ++r ++  ++ +  k
     KKY22869.1 184 DTQVLHAVVEELNERFGDEEIADMLRRVR-EIVeEARTEEQEKEDRNGK 231
                    57899*********************966.5551555555555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       996  (0.0555525); expected 358.6 (0.02)
Passed bias filter:                      690  (0.0384851); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1698.09
//
Query:       KKY22870.1  [L=492]
Description: hypothetical protein UCRPC4_g03070 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3284.70
//
Query:       KKY22871.1  [L=339]
Description: hypothetical protein UCRPC4_g03071 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.061   13.3   0.0       0.17   11.9   0.0    1.7  1  DUF327        Protein of unknown function (DUF327)
      0.087   12.9   3.2       0.17   11.9   1.6    2.2  3  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C
      0.098   12.8   0.1       0.83    9.8   0.1    2.3  2  Fib_alpha     Fibrinogen alpha/beta chain family
       0.14   12.5   0.8       0.37   11.2   0.8    1.7  1  Sec3_C_2      Sec3 exocyst complex subunit
       0.61   10.0   6.0          3    7.7   0.9    2.7  2  DASH_Spc19    Spc19


Domain annotation for each model (and alignments):
>> DUF327  Protein of unknown function (DUF327)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.6e-05      0.17      14      61 ..      58     104 ..      43     106 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.6e-05
                 XXXXXX....XXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- CS
      DUF327  14 kktkkk....ekkkksFsetlekeeeeeseeelkelleeidkqgerLaesrt 61 
                 +    +    +++++sF ++l++ +++ s + l++l +ei ++g+rLa +++
  KKY22871.1  58 S----SltdiSSSTQSFLSQLNAYSSQLSTD-LTQLTDEILRSGSRLAYEVE 104
                 2....13445789*********999887776.***************98765 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.6   4.9e-05      0.17       2      63 ..      41     101 ..      39     132 .. 0.72
   2 ?   -2.9   0.0       1.8   6.5e+03      48      58 ..     172     182 ..     168     191 .. 0.37
   3 ?   -1.1   0.0      0.48   1.7e+03      68      81 ..     226     239 ..     216     259 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.9e-05
  Baculo_PEP_C   2 advqqLnggggnqfldLtnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldt 63 
                   +++ +L++++++   ++t  L++i + + + l+ql++   ++ t L++l++++ ++ + l+ 
    KKY22871.1  41 NNLPRLSINTASS-HNVTSSLTDISSSTQSFLSQLNAYSSQLSTDLTQLTDEILRSGSRLAY 101
                   5677788888775.688999999988888889999999999999999999988776555544 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.8
  Baculo_PEP_C  48 nalsedlksll 58 
                   n+++++l++++
    KKY22871.1 172 NQVKARLEEVI 182
                   22222222222 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.48
  Baculo_PEP_C  68 lltnLtdalnalqd 81 
                   ++++L + +++l+ 
    KKY22871.1 226 VAEKLRNEIQTLTS 239
                   44444445555444 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00023      0.83      37      99 ..      36      94 ..      29     108 .. 0.80
   2 ?   -0.4   0.0      0.34   1.2e+03      72     108 ..     216     256 ..     195     261 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00023
                HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC CS
   Fib_alpha 37 lekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketida 99
                +e l+n+l ++s +t ++++++++++d+  ++q+  ++    ++ +s++l ++ ++l ++i +
  KKY22871.1 36 IEYLNNNLPRLSINTASSHNVTSSLTDISSSTQSFLSQ----LNAYSSQLSTDLTQLTDEILR 94
                899*************************9999999986....555555555555566666655 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.34
                 HHHHHHHHHHHHHHHHHCCCHH....HHHHHCCHHHHHHHH CS
   Fib_alpha  72 kkdndnvikksskeleeeilrl....ketidaqesnirvLq 108
                 ++ +++  ++++++l++ei++l    ++ i a  ++++ L+
  KKY22871.1 216 ARSQEEKGSEVAEKLRNEIQTLtsggRQDIAAAARRVEHLR 256
                 44445666666666666666551111345555555555555 PP

>> Sec3_C_2  Sec3 exocyst complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.8    0.0001      0.37      36      78 ..      45      87 ..      36      91 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
    Sec3_C_2 36 elaeekielkevkdilqdsilGCeslfstlnlyslelstvlnd 78
                 l  +    ++v + l d     +s  s ln ys +lst l +
  KKY22871.1 45 RLSINTASSHNVTSSLTDISSSTQSFLSQLNAYSSQLSTDLTQ 87
                5555666789*****************************9875 PP

>> DASH_Spc19  Spc19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.9   0.00083         3     107     153 ..     135     181 ..      57     184 .. 0.72
   2 ?    4.3   0.3    0.0097        35      55     104 ..     224     273 ..     219     334 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00083
                 HHHT-XXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXX CS
  DASH_Spc19 107 eeeseeskeeeeeeenkeeekskkkltkeelerlkkLkqkKerLkyt 153
                 ee+s+ ++++++e+ +++e+ s+++ +   +++l++L q K rL++ 
  KKY22871.1 135 EEKSNGQSKTASEAGEQPEDISSARDEPGYILKLRMLNQVKARLEEV 181
                 2222222222222233333333333566778*************975 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0097
                 HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..... CS
  DASH_Spc19  55 aslaeeiePqieellekaekeleklerreetLkaklelqegrlsnaessk 104
                 +++ae+++ +i++l++  ++ ++  +rr e+L++ +   +g  ++++++k
  KKY22871.1 224 SEVAEKLRNEIQTLTSGGRQDIAAAARRVEHLRSLVLVWKGTAEEKARTK 273
                 57889999*************************99988888888854444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       938  (0.0523175); expected 358.6 (0.02)
Passed bias filter:                      660  (0.0368119); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 2145.83
//
Query:       KKY22872.1  [L=1133]
Description: putative ubiquitin conjugating enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-12   44.9   0.0    1.8e-11   44.0   0.0    1.3  1  PARP             Poly(ADP-ribose) polymerase catalytic domain
    4.9e-08   32.7   0.0      1e-07   31.7   0.0    1.5  1  UQ_con           Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
       0.13   12.5   0.0       0.33   11.2   0.0    1.7  1  RWD              RWD domain
       0.15   11.8   0.0       0.27   11.0   0.0    1.4  1  Exotox-A_cataly  Exotoxin A catalytic


Domain annotation for each model (and alignments):
>> PARP  Poly(ADP-ribose) polymerase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   3.9e-15   1.8e-11      45     111 ..     674     749 ..     660     800 .. 0.76

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 3.9e-15
                 G........SS-EEEEEEEE-GGGHHHHHHH-S--S-TTS-GGGSTTSSSEEEBSSHHHHHGGG--BSSS-EEE....E CS
        PARP  45 k........lrnrrlLfHGsrltnvasilsqGLriappeapvtGymfGkGiYfAddaskSanYcktsekkgsgl....l 111
                 k        ++  + ++HGs ++n+++i+ +GL+    +  ++G  fG+GiY++++  ++a Y+ + + k+  +    l
  KKY22872.1 674 KstqqrlnlKHPTIFAWHGSPIQNWHGIVREGLHF---KDKLHGRAFGNGIYLSQQYHTAAGYMDSLSRKQYPWpqskL 749
                 22333444567799*******************77...78899********************9986666655566663 PP

>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   2.3e-11     1e-07      49     113 ..    1015    1086 ..     977    1103 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 2.3e-11
                  EEEE--TTTTTS--EEEESS.......T-SCTTBETTSBB-CGGGSTTT--TTSHHHHHHHHHHHHHHS--T CS
      UQ_con   49 lelefpedYPlkpPkvkfvt.......kifHPnvdksGevcldiLkeekWspaltlesvllsiqsLlaepnp 113 
                  +e++f ++YP++pP ++ +        +    +v + G++c+++L ++ W+pa+++esvll++   +++ +p
  KKY22872.1 1015 IEVRFTTNYPYSPPFIRVIRprfldfaRGGGGHVTAGGAICMELLTNSGWNPASSIESVLLQVRMAITSTDP 1086
                  789****************96777666556789****************************99888755444 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.5e-05      0.33      52      77 ..    1010    1035 ..     897    1072 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.5e-05
                  CEEEEEEEEE-SSTTSS--EEEEEEC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD   52 kpslkleiklpeeYPeeaPiislsst 77  
                  + s+ +e++++ +YP+++P i++  +
  KKY22872.1 1010 LRSIIIEVRFTTNYPYSPPFIRVIRP 1035
                  66899****************98665 PP

>> Exotox-A_cataly  Exotoxin A catalytic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     6e-05      0.27       1      61 [.     673     734 ..     673     741 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6e-05
                      HHHHHHHHHCTTEEEEEEEEEEHHHHHHHHTT-----SSSS.TGTT-SEEEBSSHHHHHTTS CS
  Exotox-A_cataly   1 ladahkrLedrGyvfvGykGasleaamsivngGlrarsqdl.daiWrGlyvadnpavaaGya 61 
                      ++ +++rL+ +      ++G++ ++   iv +Gl+ + +    a  +G+y++++ + aaGy 
       KKY22872.1 673 MKSTQQRLNLKHPTIFAWHGSPIQNWHGIVREGLHFKDKLHgRAFGNGIYLSQQYHTAAGYM 734
                      56788899888888889******************987643157789**************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 7138.32
//
Query:       KKY22873.1  [L=187]
Description: putative pathogenesis associated protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.045   14.5   0.3      0.094   13.4   0.3    1.5  1  RNA_polI_A14  Yeast RNA polymerase I subunit RPA14
        5.1    7.3   9.9         22    5.2   2.3    3.5  3  LEA_4         Late embryogenesis abundant protein


Domain annotation for each model (and alignments):
>> RNA_polI_A14  Yeast RNA polymerase I subunit RPA14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.3     1e-05     0.094      10      42 ..     154     186 ..     149     187 .] 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1e-05
  RNA_polI_A14  10 sqhvskeevekfLteFIdekEssaselageess 42 
                   ++ v++++v++ L++FI++k ++a+e+a+e++s
    KKY22873.1 154 TSLVTTSDVLTWLSKFISTKKAEAKEVAKEKTS 186
                   5789******************99999988775 PP

>> LEA_4  Late embryogenesis abundant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.4   1.2e+04      10      18 ..      50      58 ..      47      59 .. 0.57
   2 ?    4.8   0.4    0.0033        29       7      38 ..      80     111 ..      78     115 .. 0.75
   3 ?    5.2   2.3    0.0025        22       7      19 ..     173     185 ..     171     187 .] 0.54

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.4
       LEA_4 10 eaKDataeK 18
                e++Da + K
  KKY22873.1 50 EVADAGYSK 58
                666666655 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0033
       LEA_4   7 KakeaKDataeKageyKDyAaeKAgeaKDkaa 38 
                 Ka e  D+t +K      +++  ++e KD+a+
  KKY22873.1  80 KADELGDNTLGKIDSKFPVVKSETKELKDTAV 111
                 88888888888887777777777777777776 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0025
       LEA_4   7 KakeaKDataeKa 19 
                 K  eaK+ ++eK+
  KKY22873.1 173 KKAEAKEVAKEKT 185
                 4455555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 1186.80
//
Query:       KKY22981.1  [L=563]
Description: putative dimethylaniline monooxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-33  115.5   1.1    1.2e-23   83.3   0.1    3.2  3  FMO-like       Flavin-binding monooxygenase-like
    3.9e-15   55.9   0.0    6.3e-13   48.6   0.0    2.8  3  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      1e-10   41.3   0.1      7e-08   32.0   0.0    2.7  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    1.2e-09   37.8   0.0    1.1e-08   34.6   0.0    2.1  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00023   21.2   0.0      0.096   12.7   0.0    3.2  3  NAD_binding_9  FAD-NAD(P)-binding
     0.0055   16.3   0.0        2.9    7.4   0.0    2.6  3  DAO            FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.9   0.1    0.0097        29       3      18 ..       2      17 ..       1      23 [. 0.92
   2 !   83.3   0.1   4.1e-27   1.2e-23      61     216 ..      44     196 ..      38     200 .. 0.86
   3 !   26.1   0.0   8.9e-10   2.7e-06     322     500 ..     371     537 ..     350     556 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.0097
    FMO-like  3 kvaviGaGvsGlasik 18
                +vaviG+G sGl s+k
  KKY22981.1  2 RVAVIGGGPSGLLSLK 17
                8*************98 PP

  == domain 2  score: 83.3 bits;  conditional E-value: 4.1e-27
    FMO-like  61 sskemscfsdfplpedypnflhnsklleylklfakefdllkyiqfkttvcsvkkrpdfstsGqwevvtek...egkkesavfdavmvctGhhvnphlpl 156
                 ss++ +cfsdf +p+d p+f+  +    yl+++ k+f+l  +i++ ttv +v+++ +  +     vvt +    +k e    dav vc+G hv p++p 
  KKY22981.1  44 SSRQFTCFSDFRIPDDKPDFVSTDYYCTYLEQYCKKFGLWPHINLSTTVEKVRRNGEKGH-----VVTYRkngSDKSEEYYCDAVAVCSGLHVTPNIPE 137
                 78999*********************************************9999876543.....55543111457777788****************5 PP

    FMO-like 157 esfpGiekfkGqyfhsrdykepevfk.gkrvlviGlGnsggdiav.elsrtaeqvllstrsG 216
                    pGie+   +++hs ++k+ e f  +k vlv G G+++ d++   ++  ++ v ls rsG
  KKY22981.1 138 --IPGIEHV-PEVLHSSKFKTREQFGvDKNVLVCGSGETSMDVSYlAVTAPTKSVTLSHRSG 196
                 ..9****98.589************549***************8624566678899999987 PP

  == domain 3  score: 26.1 bits;  conditional E-value: 8.9e-10
    FMO-like 322 dvvifatGytfafpfleeslvkveknkvslykkvfpanlekptlaiiGliqp.lGsilptvelqar.wavrvlkGlkklpsekelle..eitekkekka 416
                 d+v++atGy   fpfl+++    e+ ++         +    t+  iG+++p  G+i p++elqa+ w+ ++l   ++lp   + l+   +    e++ 
  KKY22981.1 371 DIVVLATGYRQIFPFLDDTYTVPEHANIRW-----TWKSGDETVGYIGFVRPaFGAIPPIAELQAQlWVLQIL---NQLPKPLQQLDyyRLPLTPERRL 461
                 99*****************77777777753.....3456789********984699********975777776...56665544443003444445555 PP

    FMO-like 417 krfgesksktiqtdyiayldelaaligakpnllslllkdpklalkvffGpcspyqyrlvGpGkwe.Garkailtqwdrilkplkt 500
                 k+ ++        d  ++  +la  +++ p++l++l   p +  +  + p  + ++rlvGp k +  a + + t+  r++  +k 
  KKY22981.1 462 KYAVD-------HD--TFAYQLALDMNSAPSFLQVLRFGPTVFATWALAPNFNPKFRLVGPWKSPqEAAEVMRTELWRVRDYFKI 537
                 55542.......23..3334688889999***9999999**9999999**9999******9876414555555666666665555 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.14   4.1e+02       2      11 ..       5      14 ..       4      28 .. 0.82
   2 !   48.6   0.0   2.1e-16   6.3e-13      63     223 ..      55     221 ..      35     230 .. 0.83
   3 ?    3.0   0.0     0.016        49     253     276 ..     365     388 ..     349     408 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.14
  Pyr_redox_3  2 IiGaGPaGla 11
                 +iG+GP Gl 
   KKY22981.1  5 VIGGGPSGLL 14
                 8*******95 PP

  == domain 2  score: 48.6 bits;  conditional E-value: 2.1e-16
  Pyr_redox_3  63 iseetspafslkeeklsrkealeYlrevaksfel..piklfeeVesvkke.degfevetske......tyeAkkviiAtGefdkPnklnipGeek..l 149
                   +++ +p      + +s++ +  Yl++++k+f l  +i+l ++Ve+v ++ ++g +v+ +k+      +y ++ v +  G    Pn ++ipG e+   
   KKY22981.1  55 RIPDDKP------DFVSTDYYCTYLEQYCKKFGLwpHINLSTTVEKVRRNgEKGHVVTYRKNgsdkseEYYCDAVAVCSGLHVTPNIPEIPGIEHvpE 146
                  5555566......4689999**************888************72566888766644455569*************************7556 PP

  Pyr_redox_3 150 vkhyskvkefhkya.gqkvvViGgknSavDaAlelvrk.gaeVtvvtrgseiekeesdpsyslkpdienrleelvk 223
                  v h+sk+k  +++  +++v+V G +++++D+ +  v + +++Vt+ +r+  +++  +++   ++  +  +l+e v+
   KKY22981.1 147 VLHSSKFKTREQFGvDKNVLVCGSGETSMDVSYLAVTApTKSVTLSHRS-GWQNAPKRFPEPIRFGNVRELKEKVE 221
                  88*******99998899***************9888876999**99997.58888778777777777777777655 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.016
  Pyr_redox_3 253 kkvevkddvvlatGykpdlsflkk 276
                  + + + d vvlatGy+  + fl++
   KKY22981.1 365 HATVKPDIVVLATGYRQIFPFLDD 388
                  344557899999*****9999985 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.35     1e+03     193     203 ..       2      12 ..       1      23 [. 0.89
   2 !   32.0   0.0   2.3e-11     7e-08      91     225 ..      62     195 ..      51     202 .. 0.79
   3 !    6.0   0.0    0.0018       5.4     322     341 ..     361     380 ..     353     381 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.35
  K_oxygenase 193 riaVvGsGqSa 203
                  r+aV+G+G S+
   KKY22981.1   2 RVAVIGGGPSG 12 
                  89******997 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 2.3e-11
  K_oxygenase  91 flpsRkefedYlrWvasqle..eqvrfgeeveevepdeeeeeelltveskdaegeeeelearnlvlgvG..tepkiPevleklegkervvHsseyler 184
                  +++s++ +  Yl+   +++    +++ +++ve+v+ + e+++ ++t ++ + ++++ee+++ ++ +  G   +p+iPe+   +e+ ++v+Hss++ +r
   KKY22981.1  62 DFVSTDYYCTYLEQYCKKFGlwPHINLSTTVEKVRRNGEKGH-VVTYRK-NGSDKSEEYYCDAVAVCSGlhVTPNIPEIPG-IEHVPEVLHSSKFKTR 156
                  678889999999999999984445888999*****9998764.444443.46777778888777777665589*****876.66689*********** PP

  K_oxygenase 185 keellakkriaVvGsGqSaaeifedllrrqkkvelklvtrs 225
                  + +    k+++V GsG +  ++ + ++ ++++++++l  rs
   KKY22981.1 157 E-QFGVDKNVLVCGSGETSMDVSYLAV-TAPTKSVTLSHRS 195
                  9.89999**************987555.5566788887776 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0018
  K_oxygenase 322 esgeeetlevdavvlATGYr 341
                  es ++ t++ d+vvlATGYr
   KKY22981.1 361 ESMKHATVKPDIVVLATGYR 380
                  667889999**********9 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   3.8e-12   1.1e-08       2     173 ..       2     194 ..       1     209 [. 0.74
   2 ?    0.6   0.0     0.088   2.6e+02      93     114 ..     363     384 ..     343     399 .. 0.69

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 3.8e-12
                  SEEEE--SHHHHHHHHHHHH.......HTS-EEEEETTHCHHHCSHHH.HCHHHHHHHHHHHHH.............HHHHCHHHHCCCCHCCTCEEE CS
                  xxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq.......agakvtlvelegtclnggcll.skallgvaedaeias.............evvkklnqgielllgeevvki 78 
                  +v+viGgGp Gl   ++l++         ++v+l+e+e++++  + +   + ++   ++++                +    l  +i l +++e+v+ 
   KKY22981.1   2 RVAVIGGGPSGLLSLKYLKAasdyfpvDPIDVILFESEDALVSSRQFTcFSDFRIPDDKPDF-VstdyyctyleqycK-KFGLWPHINLSTTVEKVRR 97 
                  8*******************9999888899*****977777666555423333333333333.258899999*96642.2334456888888888888 PP

                  EESC.EEEEETEEECTCEEEEEESEEEE---E..EE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T..SEEEEES-SHHHHHHHHHHHHH.T-EEEE CS
                  xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
  Pyr_redox_2  79 dpgk.kkvklekkkegdeekiaydklvlAtGs..sprdlgipGvaenvgklvrtldsaealklkllp..krivvvGgGyiGvElAaalakl.gkevtl 170
                    +k + v+++k+ +++ e++ +d++ +++G   +p+++ ipG  e+v ++   l+s +   +++    k+++v+G+G ++++++  +  +  k vtl
   KKY22981.1  98 NGEKgHVVTYRKNGSDKSEEYYCDAVAVCSGLhvTPNIPEIPGI-EHVPEV---LHSSKFKTREQFGvdKNVLVCGSGETSMDVSYLAVTApTKSVTL 191
                  755545667766667999*************5559*********.888666...4444444444444558****************998884556998 PP

                  EES CS
                  xxx RF
  Pyr_redox_2 171 vea 173
                   ++
   KKY22981.1 192 SHR 194
                  766 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.088
                  TCEEEEEESEEEE---EEE-BC CS
                  xxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  93 gdeekiaydklvlAtGssprdl 114
                   ++ +++ d +vlAtG ++  +
   KKY22981.1 363 MKHATVKPDIVVLATGYRQIFP 384
                  4566777788888888776555 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   3.2e-05     0.096       1      36 [.       4      41 ..       4      50 .. 0.88
   2 ?    3.8   0.0     0.017        51      87     154 ..      60     128 ..      52     130 .. 0.67
   3 ?    0.3   0.0      0.21   6.3e+02     139     155 ..     363     379 ..     350     380 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.2e-05
  NAD_binding_9  1 aivGaGprGlavlerLlara..kkkspleitlfdpsep 36
                   a++G+Gp+Gl+ l+ L a +   + +p+++ lf+ + +
     KKY22981.1  4 AVIGGGPSGLLSLKYLKAASdyFPVDPIDVILFESEDA 41
                   89***************99999999*********9654 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.017
  NAD_binding_9  87 pddfvpRalyGrYlrdlfeellarlpegvtvevhraevvdleeradgqavll......adgaslaadaVvLAlG 154
                    + dfv+   y  Yl+++ +++   l  +++++   ++v+++++++++ +v++      ++ +++ +daV ++ G
     KKY22981.1  60 KPDFVSTDYYCTYLEQYCKKFG--LWPHINLS---TTVEKVRRNGEKGHVVTyrkngsDKSEEYYCDAVAVCSG 128
                    5688888888888888888888..44455555...556666666655544443434423336699*****9998 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.21
  NAD_binding_9 139 adgaslaadaVvLAlGh 155
                     + a+++ d VvLA+G 
     KKY22981.1 363 MKHATVKPDIVVLATGY 379
                    56788999*******96 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00097       2.9       1      30 [.       2      40 ..       2      49 .. 0.82
   2 !    6.3   0.0     0.002         6     151     213 ..      72     138 ..      56     235 .. 0.69
   3 ?   -3.1   0.0       1.5   4.6e+03     191     202 ..     369     379 ..     317     397 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00097
                EEEEECTSHHHHHHHHHHHHTT.........EEEEESSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg.........Vtllekgd 30
                +v++iGGG  Gl    +L ++          V+l+e++d
  KKY22981.1  2 RVAVIGGGPSGLLSLKYLKAASdyfpvdpidVILFESED 40
                59****************665346668889999999984 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.002
                 HHHHHHHHTT-..EEEESECEEEEEEEETCEEEEE.....EECTEEE.E...EEEEEEE--GGGHH.HHHTTCTT CS
         DAO 151 alaraaealGv..eilegtevtgleeedgkvwgve.....rttpgen.d...aadavVnaaGawsd.llgllkel 213
                 +l + +++ G   +i + t+v++++++++k++ v              +    +dav ++ G++++  +   +e+
  KKY22981.1  72 YLEQYCKKFGLwpHINLSTTVEKVRRNGEKGHVVTyrkngS-----DkSeeyYCDAVAVCSGLHVTpNI---PEI 138
                 55555555554345556799999988765555554646422.....21133456**********76555...443 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.5
                 EEEEEEEE--GG CS
         DAO 191 daadavVnaaGa 202
                 +  d vV+a+G 
  KKY22981.1 369 KP-DIVVLATGY 379
                 12.447777774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3988.01
//
Query:       KKY22982.1  [L=202]
Description: putative v-atpase proteolipid subunit ppa1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-26   92.6  34.4    3.9e-16   59.1  12.7    2.8  3  ATP-synt_C       ATP synthase subunit C
  ------ inclusion threshold ------
      0.083   12.2   1.9       0.31   10.3   0.1    2.1  2  SLATT_5          SMODS and SLOG-associating 2TM effector doma


Domain annotation for each model (and alignments):
>> ATP-synt_C  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.7      0.61   5.5e+03      44      53 ..      12      21 ..       8      23 .. 0.55
   2 !   59.1  12.7   4.3e-20   3.9e-16       1      59 [.      47     105 ..      47     106 .. 0.98
   3 !   45.7   6.4   6.7e-16     6e-12       2      59 ..     133     190 ..     132     191 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.61
                HHHHHHHHHH CS
  ATP-synt_C 44 afaeaialyg 53
                a  ++++ly 
  KKY22982.1 12 AALGVVGLYM 21
                4445556665 PP

  == domain 2  score: 59.1 bits;  conditional E-value: 4.3e-20
                 HHHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C   1 lgaglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivali 59 
                 +g+gl++Gls++g+++gi ++gs++i++ +r p+++tk li ++f+e++a+yg+i+a++
  KKY22982.1  47 IGIGLCIGLSVVGAAWGIFITGSSIIGGGVRAPRIRTKNLISIIFCEVVAIYGVIMAIV 105
                 79*******************************************************97 PP

  == domain 3  score: 45.7 bits;  conditional E-value: 6.7e-16
                 HHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C   2 gaglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivali 59 
                  agl vG++ l +G+ +G+ gs+++ a a +p+lf+k l+i +f+ +++l+gLi++l+
  KKY22982.1 133 WAGLTVGMCNLICGVSVGINGSSAALADASDPSLFVKILVIEIFSSVLGLFGLIIGLL 190
                 79******************************************************98 PP

>> SLATT_5  SMODS and SLOG-associating 2TM effector domain family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   3.5e-05      0.31      24      59 ..      79     114 ..      76     142 .. 0.77
   2 ?    1.2   0.3     0.023     2e+02      63      85 ..     172     194 ..     153     196 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3.5e-05
     SLATT_5  24 eRlrrknklstfslsllSvylivlsllsnkssesti 59 
                  R+r+kn +s++++ ++++y+++++++  + +e + 
  KKY22982.1  79 PRIRTKNLISIIFCEVVAIYGVIMAIVFSQLIEIVQ 114
                 59************************9945444443 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.023
     SLATT_5  63 lldflsiilSilvlvisllessk 85 
                 +++++s +l+ + l+i+ll+s+k
  KKY22982.1 172 VIEIFSSVLGLFGLIIGLLVSGK 194
                 6788999999999***9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1373.90
//
Query:       KKY22983.1  [L=411]
Description: putative ras small monomeric gtpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-56  189.5   0.2    4.5e-56  188.9   0.2    1.2  1  Ras          Ras family
    4.9e-35  120.3   0.1    9.3e-35  119.4   0.1    1.5  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    2.8e-14   53.0   0.3    4.1e-14   52.4   0.3    1.2  1  Arf          ADP-ribosylation factor family
    9.7e-06   25.3   0.1      3e-05   23.7   0.1    1.8  1  GTP_EFTU     Elongation factor Tu GTP binding domain
      9e-05   22.5   0.0    0.00018   21.6   0.0    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
    0.00015   21.2   0.0    0.00025   20.6   0.0    1.3  1  SRPRB        Signal recognition particle receptor beta subuni
    0.00031   20.2   0.2    0.00047   19.6   0.2    1.2  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
    0.00078   19.4   0.1        0.2   11.6   0.0    2.2  2  RsgA_GTPase  RsgA GTPase


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.9   0.2     2e-59   4.5e-56       2     159 ..     218     375 ..     217     377 .. 0.99

  Alignments for each domain:
  == domain 1  score: 188.9 bits;  conditional E-value: 2e-59
                 EEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrv 100
                 lv++G+++vGKtsl++rf+ d+F++ y++Tig+df++k++ +++++v+l++wDTAGqe+f+sl ++y+rd++++++vydi+s+++f + +kw+++++  
  KKY22983.1 218 LVFLGEQSVGKTSLITRFMYDSFDNMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISSQKTFAQTRKWIDDVRGE 316
                 799************************************************************************************************ PP

                 STTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHH CS
         Ras 101 aeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellre 159
                   ++v ivLvGnK+Dl++kr+v+t++gee ak++g++f+etSAk  +nv+++f +++++
  KKY22983.1 317 RGNDVIIVLVGNKTDLNDKREVTTQQGEEEAKRVGAMFVETSAKVGHNVKNLFRRIAQA 375
                 *******************************************************9986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   0.1   4.2e-38   9.3e-35       2     119 ..     218     331 ..     217     332 .. 0.90

  Alignments for each domain:
  == domain 1  score: 119.4 bits;  conditional E-value: 4.2e-38
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHHH CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlke 97 
                 +v++G+++vGKtsl++rf+ d+f++ +++tig+dfl+k++  ++        ++v+l++WDtaGqerfrsl p+y+r++++a++vyd   ++++++ ++
  KKY22983.1 218 LVFLGEQSVGKTSLITRFMYDSFDNMYQATIGIDFLSKTMY-LED-------RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDissQKTFAQTRK 308
                 699**********************************9973.322.......5799*******************************86555778999* PP

                 HHHHHHHHCSSS-E.EEEEE-TT CS
         Roc  98 Wlkelkkvagkspv.ilvgnkiD 119
                 W+++++ ++g++++ +lvgnk+D
  KKY22983.1 309 WIDDVRGERGNDVIiVLVGNKTD 331
                 ******99998865168*****9 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.3   1.8e-17   4.1e-14      17     174 ..     218     375 ..     210     376 .. 0.86

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 1.8e-17
                 EEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEE..EEE..EEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCTS CS
         Arf  17 illlGLDnaGKtTilkklkleelvt.tvPTigfn..vee..leiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkallee 110
                 +++lG  + GKt ++++++ +++++  + Tig +  +++  le +++++++wD  Gqe+ R+l  +Y ++  + + v D + ++ ++++++ ++ + + 
  KKY22983.1 218 LVFLGEQSVGKTSLITRFMYDSFDNmYQATIGIDflSKTmyLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISSQKTFAQTRKWIDDV-RG 315
                 689********************99557898865214551245599************************************************97.55 PP

                 GCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHHHH CS
         Arf 111 eelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlses 174
                 e+ ++v++++++NK Dl++   ++e++++ g ee k +     +++sa  g+++k+ ++++++ 
  KKY22983.1 316 ERGNDVIIVLVGNKTDLND---KREVTTQQGEEEAK-RVGAMFVETSAKVGHNVKNLFRRIAQA 375
                 67789999999******97...57888999999988.6667778999***********999875 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   1.3e-08     3e-05      53     192 ..     249     376 ..     213     378 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.3e-08
                 TSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.STHHHHHHHHHHHHTTTE...EEEEEESCGST.HHHHHHHHHHH CS
    GTP_EFTU  53 giTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG.vepqteevlrlalkegvp...iivfiNKmDrl.kaelkeiveev 146
                 gi   s++++le   ++ +++l Dt G + F + +   +r   +av+v d+++    +qt++ +  ++ e+ +   i+++ NK D   k e+  ++ e 
  KKY22983.1 249 GIDFLSKTMYLE--DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISSQkTFAQTRKWIDDVRGERGNdviIVLVGNKTDLNdKREVTTQQGEE 345
                 333344555555..999*********************************99763779**********9999987566777****99533333333333 PP

                 HHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHS CS
    GTP_EFTU 147 kqklsrkeeklekygekgekevpvvfgSalkgegvktllealvell 192
                 + k            + g     +v +Sa+ g +vk+l++ + + l
  KKY22983.1 346 EAKR-----------V-G---AMFVETSAKVGHNVKNLFRRIAQAL 376
                 3222...........1.2...3477777777777777777777666 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0     8e-08   0.00018       3     112 ..     219     325 ..     217     329 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 8e-08
                 EEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT..EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHHHH CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg..keielvDtpGliegaseekglgkaflaleeadlillvvdas.eeklkpldeele 98 
                 +++G   vGK++Li + + +      ++   +d   +++ l++   +++l+Dt+G  e   + ++l  ++ +  +++++++v d+s ++++++ ++ + 
  KKY22983.1 219 VFLGEQSVGKTSLITRFMYDSFDNMYQATIGIDFLSKTMYLEDrtVRLQLWDTAG-QE---RFRSLIPSYIR--DSSVAVVVYDISsQKTFAQTRKWID 311
                 789**************9864444444444444445555543323569*******.54...34488888886..5667777777775678999999999 PP

                 HHHHHTTSEEEEEE CS
    MMR_HSR1  99 elleeakkplilvl 112
                 +++ e++ ++i+vl
  KKY22983.1 312 DVRGERGNDVIIVL 325
                 99988777766654 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.1e-07   0.00025       6     130 ..     218     338 ..     216     372 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.1e-07
                 EEEE-STTSSHHHHHHHHHHS...S---B---SS-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHHH CS
       SRPRB   6 vllvGlsdsGKTslftrLttd...svkktvtSqessaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllye 101
                 ++++G +  GKTsl+tr + d   ++ ++ + ++  + + + +++  +l+l D  G+e++r+ +  + +  ss+  +v+ + S   +k   ++  ++ +
  KKY22983.1 218 LVFLGEQSVGKTSLITRFMYDsfdNMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-IRDSSVAVVVYDISS---QKTFAQTRKWIDD 312
                 5799****************9333344444555666666678999****************977777.666778888888776...7888888888888 PP

                 HHHHHHHHTT---EEEEEE-TTSTT---H CS
       SRPRB 102 illiteklkdavdiliACnKqelflaksp 130
                 +  +     + v i++  nK +l   ++ 
  KKY22983.1 313 VRGERG---NDVIIVLVGNKTDLNDKREV 338
                 876655...77778888888887765554 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.2   2.1e-07   0.00047       2     140 ..     218     347 ..     217     369 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.1e-07
   Gtr1_RagA   2 vLLmGksgsGKtsmrs.iiFdnylardtlrlgatidveksevrfl.gnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 ++++G+++ GKts+    ++d +    + + ++ id   +++ +  + + l+lwD  Gqe+f     s+ ++   ++v+v++y  D++    ++++++ 
  KKY22983.1 218 LVFLGEQSVGKTSLITrFMYDSFDN--MYQATIGIDFLSKTMYLEdRTVRLQLWDTAGQERFRSLIPSYIRD---SSVAVVVY--DIS---SQKTFAQT 306
                 6789*********765156665544..44444445555555544315679************9887444444...45666666..777...56899999 PP

   Gtr1_RagA  99 keilealrqyspeakvfvli.hKmDliqedereeifeerkeei 140
                 ++ ++ +r    +  + vl+ +K+Dl   d+re + ++ +ee 
  KKY22983.1 307 RKWIDDVRGERGNDVIIVLVgNKTDLN--DKREVTTQQGEEEA 347
                 999****99999999999996799986..55555555555544 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0054        12     101     119 ..     217     235 ..     178     249 .. 0.81
   2 !   11.6   0.0   8.8e-05       0.2      46     101 ..     320     376 ..     279     402 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0054
                  EEEEECSTTSSHHHHHHHH CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinal 119
                  + v++G+  vGK++Li ++
   KKY22983.1 217 LLVFLGEQSVGKTSLITRF 235
                  789*************876 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 8.8e-05
                  T-EEEEEEE-GGG--HHH.HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSE CS
  RsgA_GTPase  46 giepvivlnKiDlleeee.eleelkeelealgyevllvsaktkegleelkellkdkt 101
                  ++ +v+v nK+Dl +++e ++++ +ee +++g  ++ +sak ++++++l +++++ +
   KKY22983.1 320 DVIIVLVGNKTDLNDKREvTTQQGEEEAKRVGAMFVETSAKVGHNVKNLFRRIAQAL 376
                  45566777********99888899999********************9999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 2631.24
//
Query:       KKY22984.1  [L=461]
Description: hypothetical protein UCRPC4_g02989 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-42  146.0   0.0    6.3e-41  140.5   0.0    2.3  2  Pkinase      Protein kinase domain
    1.3e-23   83.7   0.0      2e-23   83.0   0.0    1.3  1  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.1   0.0    0.0055        50       1      22 [.      81     102 ..      81     107 .. 0.85
   2 !  140.5   0.0   7.1e-45   6.3e-41      24     260 ..     126     423 ..     119     425 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.0055
                 EEEEEEEEEESSEEEEEEEETT CS
     Pkinase   1 yekleklGeGsfGkVykaveke 22 
                 +ek e +G+G+f+ Vy+++++ 
  KKY22984.1  81 FEKAELVGTGEFSLVYRVTKQP 102
                 678899***********99865 PP

  == domain 2  score: 140.5 bits;  conditional E-value: 7.1e-45
                 TEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH...HHSS--HHHHHHHHHHHHHHHHHHHHTT CS
     Pkinase  24 gkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladlle...rkgslseeeakkiakqilegleylHskg 118
                 ++ +AvKk k +    k+++k ++E+ +lk+l  +++iv +++++ee  +ly+ +e++e+g+++d+l+    +g l++ ++ ki+ ++  gl+++H++g
  KKY22984.1 126 ERVWAVKKSKYSYSGAKDRQKKIHEVDVLKTLGlSDHIVSFVDSWEERGHLYIQTEFCEEGSMDDFLTrvgMQGRLDDFRIWKILLELSLGLKHIHDHG 224
                 5789************999************************************************98887888************************ PP

                 EE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHT..HHH CS
     Pkinase 119 iiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldq..lek 215
                 +iH D+Kp+NiLi  +g+lKi+DFG+a+++  +    +  g++eY+ PE+l + +y+k++D+++lG+i++e  +g+  ++   ++ + +++l++  l  
  KKY22984.1 225 FIHLDIKPANILITFEGVLKIADFGMAAKWPAKA-HIEGEGDREYIGPEIL-KGQYDKPADIFALGLIMVET-AGNVSLP---DNGTSWQKLRNgdLSD 317
                 ********************************98.8899************.668****************9.8999999...4555577777733444 PP

                 HHHHCTSHH...HHHTTS..............................................................-HHHHHHHHHHT-SSGCCS CS
     Pkinase 216 ilkilgetkeklpeasei..............................................................seeakdllkkllkkdpkkR 252
                 +  +   ++e+++  ++i                                                              ++ + ++++++++  p +R
  KKY22984.1 318 VPSLT-WSSENSNATRDIsgngldkepsfeemrdvsgvddaqlrespssrrsfrgkkstthitregeltepptwmidpnsEHGLERIIRWMISPHPGDR 415
                 44433.334555555555788899999999999999999999999999999999999999999999999999999999977778899999999999999 PP

                 TTHHHHHT CS
     Pkinase 253 ltaeellq 260
                 + ++e+lq
  KKY22984.1 416 PRVDEVLQ 423
                 99999987 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.0   2.3e-27     2e-23       5     205 ..      85     301 ..      81     327 .. 0.83

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 2.3e-27
                  EEEEEESSEEEEEEEEET..................TTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE- CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkg..................ekekkevkVavKtlkeeateee.keelleeakimkkl.khpnivkllgvctkeepllivtey 82 
                  + +G G+f+ V++ t +                   + +  e   avK+ k +++  + +++ ++e++++k+l   ++iv+++    ++++l+i te+
   KKY22984.1  85 ELVGTGEFSLVYRVTKQPeaspfhpafsltasrsssQASLPERVWAVKKSKYSYSGAKdRQKKIHEVDVLKTLgLSDHIVSFVDSWEERGHLYIQTEF 182
                  5677777777777777767777777777777665544444556679****987765544999***********99*********************** PP

                  -TTEBHHHHHHHT.CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHH CS
  Pkinase_Tyr  83 vkgGdLlkfLrkk.ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslke 179
                  +++G++++fL++   + +l+  ++ ++ l+++ G+++++++ ++H d+   N+L++ + v ki+DfG+a +       +++ e++   +++ pE+lk 
   KKY22984.1 183 CEEGSMDDFLTRVgMQGRLDDFRIWKILLELSLGLKHIHDHGFIHLDIKPANILITFEGVLKIADFGMAAKW----PAKAHIEGEGDREYIGPEILK- 275
                  **********99745677888889***********************************************9....4455556677789*****886. PP

                  SEEEHHHHHHHHHHHHHHHHTTSSGT CS
  Pkinase_Tyr 180 kkftsksDvWsfGvllwEiftlgesp 205
                  +++ + +D+++ G ++ E + + + p
   KKY22984.1 276 GQYDKPADIFALGLIMVETAGNVSLP 301
                  78****************87665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 2820.85
//
Query:       KKY22985.1  [L=279]
Description: putative orotidine 5phosphate decarboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-72  243.6   0.2    2.1e-72  243.4   0.2    1.1  1  OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS famil
  ------ inclusion threshold ------
       0.74    9.9   3.2        1.3    9.1   0.1    2.4  2  Stomoxyn   Insect antimicrobial peptide, stomoxyn


Domain annotation for each model (and alignments):
>> OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.4   0.2   2.3e-76   2.1e-72       1     225 []      33     261 ..      33     261 .. 0.96

  Alignments for each domain:
  == domain 1  score: 243.4 bits;  conditional E-value: 2.3e-76
                 SEEEEEE-SSSHHHHHHHHHHHGGGSSEEEEEHHHHHHHTHH.HHTHHHHHHHHHTSEEEEEEEE-S-HHHHHHHHHSTCHHHHTTESEEEEEGTGHHH CS
   OMPdecase   1 snLclalDvatarelleladkvgpsivvlKthydlvegwgfegtgaklaalarkhgflifeDrKfaDIGntvekqatagsarikewadivtvhavaGka 99 
                 +n+ +++Dv+t++ell+lad +gp+i+vlKth+d++++++ e+t++ l++l rkh+fl+feDrKf+DIGntv+kq+++g+ +i+ewa+i+++ ++aG++
  KKY22985.1  33 TNVTVSADVSTTKELLALADSLGPYIAVLKTHIDILSDFS-EETIKGLVDLSRKHNFLLFEDRKFVDIGNTVQKQYHGGALKISEWAHIINAAILAGSG 130
                 5999***********************************9.77******************************************************** PP

                 HHHHHHHHHHHTT.....S.EEEEEESTSSGGHHHHHHHSHHHHHHHHHHHHHHHTTESEEECCCHTH......HHHHH.TTCSCEEEHHHTTEEEEEC CS
   OMPdecase 100 svkalaeaaekwg.....nrgllilaqmsskgnlmlqekgytqacveaarehkaedfvmGfvaqetln......ateed.addfihltpgigleqggdg 186
                 +++al +++ek +     +r +lila+m+skg+l+++e  yt   ve a++h     vmGfva ++l       ++  +  +dfi++t g++++++gd+
  KKY22985.1 131 IIEALGQTIEKGDfggpdERAILILAEMTSKGSLAVGE--YTRVSVELAQKHP--RVVMGFVATKELSsvetglKS--AeNEDFIIFTTGVNVASKGDA 223
                 ************9*************************..*************..78***********99775333..2569***************** PP

                 TTCCGGGHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHH CS
   OMPdecase 187 kgqqyntpekligiagadiiivGRgIlkagdpveeaery 225
                 +gqqy+tpe +i   gad+ii+GRgI+ ++dp ++++ y
  KKY22985.1 224 LGQQYQTPESAIA-GGADFIIAGRGIYASPDPIAAVKTY 261
                 ***********99.99*******************9987 PP

>> Stomoxyn  Insect antimicrobial peptide, stomoxyn
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.5     0.084   7.5e+02      13      23 ..      23      32 ..      15      39 .. 0.79
   2 ?    9.1   0.1   0.00014       1.3      18      35 ..     114     130 ..     104     133 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.084
                HHHHHHHHHHT CS
    Stomoxyn 13 KvKHTiSETAH 23
                K+  Ti+ET H
  KKY22985.1 23 KL-FTIAETKH 32
                44.69****99 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00014
                 HHHHHTHHHHTTTTGGGT CS
    Stomoxyn  18 iSETAHVAKDaAViAGSG 35 
                 iSE AH+   aA++AGSG
  KKY22985.1 114 ISEWAHII-NAAILAGSG 130
                 9*****97.79******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1805.12
//
Query:       KKY22986.1  [L=713]
Description: putative phospholipid metabolism enzyme regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.3e-154  514.4   2.4   2.3e-154  514.4   2.4    2.3  2  Vac7             Vacuolar segregation subunit 7
  ------ inclusion threshold ------
       0.14   11.3   0.2       0.19   10.8   0.2    1.1  1  AI-2E_transport  AI-2E family transporter
        0.2   12.2   1.8       0.65   10.6   0.1    2.6  3  LEA_2            Late embryogenesis abundant protein


Domain annotation for each model (and alignments):
>> Vac7  Vacuolar segregation subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   6.2      0.56   3.3e+03     127     207 ..      28     110 ..       5     178 .. 0.48
   2 !  514.4   2.4  3.9e-158  2.3e-154       1     377 [.     188     560 ..     188     563 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.56
        Vac7 127 evldseksvagkksmKFsnttynssaldsdseesdegkkrsrgegsgrgtar.hhhigrygr.kaknghsslfdeespftqaq 207
                 + ld   ++  k smK s ++++ s  ++d+ +s  +++ s g+ ++r ++    +++r  r +++++   l ++e p +  +
  KKY22986.1  28 AQLDDVDKTPSKPSMKVSASATDLSIENHDDSKSRLSREASPGRPQTRTNQDrMPSLTRSRRsSPEGSSYGLKQTEEPVSLVA 110
                 33444556677888888877755444444444444344333333333222221234444444334444444444444444333 PP

  == domain 2  score: 514.4 bits;  conditional E-value: 3.9e-158
        Vac7   1 tvEteTVsSiPqvalgagagerga......ngslrlkpSteTirPkkekkktsrkqssvtsgtassKADiFeakvAsavdeanssDSdETFvYeSNPpd 93 
                 tvEteTVsSiPqv+lg+gagerg+       gs+rlkpSteTirPkk+kk+t+rk++s+++gt+ssKADiFeakvAsavdea ssDSdETFvYeSNPpd
  KKY22986.1 188 TVETETVSSIPQVSLGVGAGERGVsgrvetGGSVRLKPSTETIRPKKDKKRTARKPTSLNAGTVSSKADIFEAKVASAVDEATSSDSDETFVYESNPPD 286
                 8**********************999***99******************************************************************** PP

        Vac7  94 sedrrkrrfHSRtPSatSmasqvdqrsglrsiaevldseksvagkksmKFsnttynssaldsd.seesdegkkrsrgegsgrgtarhhhigrygrkakn 191
                 ++ +r +r+HSRtPSa+Smasq+d + + r +++  d+++svagk+smKF+n++yn+ +ld++ ++ s +g++r+     g+ t+rhhhigrygr   +
  KKY22986.1 287 THGSR-QRHHSRTPSAASMASQADTT-SSRYRSGPKDGQHSVAGKRSMKFTNSAYNN-NLDGEiGPGSAKGNSRG-----GTITPRHHHIGRYGR---G 374
                 76666.9***************8888.67**************************97.55555045555555555.....89*************...9 PP

        Vac7 192 ghsslfdeespftqaqksrakkl....srqssrpksprssasssrktasskkkkeeasydldaegaddErtPLvgsvRsarsrrsrrrpnsaslrqlee 286
                 gh+slfd++spftqa++  + k+    +++ srp+spr++  +   +++  +k+e    d+d++ addErtPLvgsvR +rsr+ +rrpnsaslrq+e+
  KKY22986.1 375 GHTSLFDNDSPFTQANRGPSGKNgminASRLSRPSSPRVNGYR---NGTPTRKGEVFDQDFDEDAADDERTPLVGSVRINRSRH-ARRPNSASLRQIEY 469
                 ****************987776678888999********9874...4666777778889*************************.9************* PP

        Vac7 287 lqqrrrsllsrfaaClvltvllllvvsgaigflfattkpLedvevvkiqnvlaseqelmlDlevkAvNpNvvavtvdeldvniFAkSkyvg 377
                 l+qr+r +lsr++aC+++t++ll+++ ga++fl+a +kpL+dv v++iqnvlaseqe+mlDl+v+A+NpN++a+tv++l+v+iFA+S yv 
  KKY22986.1 470 LEQRDRRFLSRYGACIIVTLFLLIILFGAATFLVALAKPLTDVTVKHIQNVLASEQEIMLDLDVRATNPNLFAITVSDLNVDIFARSAYVR 560
                 *****************************************************************************************96 PP

>> AI-2E_transport  AI-2E family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   3.2e-05      0.19      44     104 ..     475     535 ..     469     558 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.2e-05
  AI-2E_transport  44 krgvkrvlavllvlllllvllvllvlllvplliaqltqlvkslpayidslqnilnelpsll 104
                      +r+++r+ a ++v+l+ll++l++  ++lv l+   +   vk+++++++s q+i+ +l+ + 
       KKY22986.1 475 RRFLSRYGACIIVTLFLLIILFGAATFLVALAKPLTDVTVKHIQNVLASEQEIMLDLDVRA 535
                      79999**************************************************999765 PP

>> LEA_2  Late embryogenesis abundant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.58   3.4e+03      44      83 ..     186     224 ..     178     234 .. 0.52
   2 ?   10.6   0.1   0.00011      0.65       2      45 ..     533     576 ..     532     596 .. 0.82
   3 ?   -1.8   0.0      0.78   4.7e+03      69      84 ..     662     677 ..     633     687 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.58
                 EEEEEE.EEEEEHHHHHHHHHHHH..HCCSEEEEEEEEEEE CS
       LEA_2  44 tttlev.pvsvsaddlarelrallagevgleleytlrgrlk 83 
                 t t+e+ +vs+  ++ +   ++++   v+ ++e  + +rlk
  KKY22986.1 186 TMTVETeTVSSIPQVSLGVGAGER--GVSGRVETGGSVRLK 224
                 444444444444444444444444..355555555555555 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00011
                 EEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEE CS
       LEA_2   2 lrvrNPNsfgvrydgleldlsyngqrlasgtspqgfsqpargtt 45 
                 +r +NPN f++++++l +d+ ++ + + +++ +   s+p+r+++
  KKY22986.1 533 VRATNPNLFAITVSDLNVDIFARSAYVRASHIDVQPSVPSRRKK 576
                 89*********************999998888888888888777 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.78
                 HCCSEEEEEEEEEEE. CS
       LEA_2  69 evgleleytlrgrlkv 84 
                 +++   e+t+rg++k+
  KKY22986.1 662 VLQHSFELTVRGNIKY 677
                 3444445555555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.51
# Mc/sec: 4232.42
//
Query:       KKY22987.1  [L=976]
Description: hypothetical protein UCRPC4_g02992 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-28   98.9  33.2    4.1e-28   98.9  33.2   10.9 11  DUF3824          Domain of unknwon function (DUF3824)


Domain annotation for each model (and alignments):
>> DUF3824  Domain of unknwon function (DUF3824)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.0   2.6         1   1.8e+04      44      44 ..      39      39 ..       6      73 .. 0.49
   2 ?   -0.6   7.3       0.1   1.9e+03      36      92 ..     139     187 ..     127     201 .. 0.67
   3 ?   -6.8   7.8         1   1.8e+04      29      52 ..     245     253 ..     199     284 .. 0.57
   4 !    3.8   0.5    0.0046        83       4      34 ..     304     330 ..     296     336 .. 0.74
   5 !    3.7   2.1    0.0049        88      14      56 ..     345     386 ..     342     396 .. 0.60
   6 !    8.0   7.3   0.00023       4.2       2      60 ..     396     454 ..     389     457 .. 0.85
   7 !    4.6   3.3    0.0027        49       5      43 ..     455     493 ..     450     495 .. 0.65
   8 !   11.1   4.9   2.6e-05      0.46       1      79 [.     487     574 ..     487     587 .. 0.56
   9 !    7.3   3.2    0.0004       7.2      14      47 ..     589     623 ..     585     636 .. 0.68
  10 !   98.9  33.2   2.3e-32   4.1e-28       1     148 []     639     779 ..     637     779 .. 0.75
  11 ?   -3.9   8.0         1   1.8e+04      33      86 ..     851     907 ..     828     943 .. 0.53

  Alignments for each domain:
  == domain 1  score: -5.0 bits;  conditional E-value: 1
     DUF3824 44 e 44
                e
  KKY22987.1 39 E 39
                2 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.1
     DUF3824  36 erererrreedeardsyeeey.epepyspsPeassqPsasqesyyPetnyFPPPPgst 92 
                  ++re  r+ed+   sye++y  ++  +       +P+++ ++y  +t+yF  P +++
  KKY22987.1 139 RYDRELTRYEDR---SYERDYvYDKARD------LAPPQDLHRYSRSTEYFSRPEQPQ 187
                 578999999996...9999993333333......345666666989999998887773 PP

  == domain 3  score: -6.8 bits;  conditional E-value: 1
     DUF3824  29 rrerkkaerererrreedeardsy 52 
                  r+r++               d+y
  KKY22987.1 245 PRDRSE---------------DYY 253
                 111111...............122 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.0046
     DUF3824   4 srsrdlAeaalaaggaglAaheyakrrerkk 34 
                  r r++Ae al    ag+++ e+ +r ++k+
  KKY22987.1 304 HRRRHVAEGAL----AGIGVAEILRRHNKKE 330
                 4789*******....6777778887777775 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.0049
     DUF3824  14 laaggaglAahe.yakrrerkkaerererrreedeardsyeeey 56 
                 l+ag++g+ a e +++ r r + +++r+rr  + ++ +s+ e++
  KKY22987.1 345 LGAGVLGVVAAEgVSRARSRMR-SKSRSRRGRDRSR-SSSRETR 386
                 7899999755551556666665.7777777666653.4444433 PP

  == domain 6  score: 8.0 bits;  conditional E-value: 0.00023
     DUF3824   2 srsrsrdlAeaalaaggaglAaheyakrrerkkaerererrreedeardsyeeeyepep 60 
                 s+sr ++  +++l+a+++++Aa  ++ r++   + r+r+r+r     ++  ++ ++p++
  KKY22987.1 396 SHSRLKQAGAVGLGAAALAVAAAVARSRNKSVDSRRSRSRHRRSSVGPETVDDARNPSH 454
                 6788999999*************999999999999999999988888888888877765 PP

  == domain 7  score: 4.6 bits;  conditional E-value: 0.0027
     DUF3824   5 rsrdlAeaalaaggaglAaheyakrrerkka.erererrr 43 
                 r + +Aea+l ag+a  +  e a+ + rk++ +r+r+r r
  KKY22987.1 455 RNKVMAEAGL-AGAAVAGLIERARSKSRKRNgDRSRSRIR 493
                 67789****9.44444455566666666664477777755 PP

  == domain 8  score: 11.1 bits;  conditional E-value: 2.6e-05
     DUF3824   1 rsrsrsrd...lAeaalaaggaglAaheyakrrerkka.....erererrreede.ardsyeeeyepe...pyspsPeassqPsasqesyy 79 
                 rsrsr r+   +A+a+l++++ +   ++ + +re++ a     +r+r r+r+ ++ ++ds+    ++    +y+  P +   P++    yy
  KKY22987.1 487 RSRSRIRTglpIAAAGLGSAAIAGLYEKNKAKREEQAAiaerkSRSRTRSRSRHSvYPDSSRGAISDPnmiEYGTDPVYGAIPQQ---GYY 574
                 899**99654577777754444433445555555554467666677777777776666777666633211134444443333333...255 PP

  == domain 9  score: 7.3 bits;  conditional E-value: 0.0004
     DUF3824  14 laaggaglAaheyakrrerkka.erererrreede 47 
                 + a+gag Aa  +  r+er+++ +r+r+rrr+  +
  KKY22987.1 589 VPAAGAGAAAAYAPTRNERSRSrSRSRSRRRSSSS 623
                 45778888887777888888855666777666554 PP

  == domain 10  score: 98.9 bits;  conditional E-value: 2.3e-32
     DUF3824   1 rsrsrsrdlAeaalaaggaglAaheyakrrerkka....erererrreede.ardsyeeeyepepyspsPeassqPsasqesyyPetnyFPPPPgstpk 94 
                 rsrs+s dlA+a++aa+g++lAa+ey+kr+erk+a     re++rrre +  ++++yee y+p+py p       P ++  +yyP++n+FPPPPg++p+
  KKY22987.1 639 RSRSQSHDLATAGVAAAGGALAANEYQKRKERKRAekeaRREERRRREAEAaHQEPYEEGYDPAPYVP-------PAQD--QYYPQSNNFPPPPGAVPQ 728
                 78999******************************443322233333334347789999998888887.......3443..4**************888 PP

     DUF3824  95 psveeepeaaiapynPadYpppPgaappeqeyqypP....epgedeyaprprradenv 148
                 +       ++++pynP+dY   Pg+ p+    +y+P    +p     ++rprr denv
  KKY22987.1 729 E-----YPQQQNPYNPGDYQAHPGSIPQ-PGTAYNPsypaNPAV-DQYGRPRRGDENV 779
                 3.....336788*************744.566776633323333.3458999*9*997 PP

  == domain 11  score: -3.9 bits;  conditional E-value: 1
     DUF3824  33 kkaerererrreedeardsyeeeyepepyspsPe...assqPsasqesyyPetnyFP 86 
                  + + +r+r+r +++ ++  + +++++  +ps +   +s  P +++++    +++ P
  KKY22987.1 851 TQDDSDRRRSRGDETPSNRRTARFADDVANPSSAtsrTSAYPDNKTSKSSQTSSSRP 907
                 334666666666666555555555444333333211234445444443222222223 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (976 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1421  (0.0792571); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.22u 0.40s 00:00:01.62 Elapsed: 00:00:00.60
# Mc/sec: 4916.22
//
Query:       KKY22988.1  [L=971]
Description: putative mrna splicing factor rna helicase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.5e-22   77.2   0.0    2.9e-21   75.6   0.0    1.9  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    3.4e-15   56.3   0.0    3.4e-15   56.3   0.0    3.2  2  HA2          Helicase associated domain (HA2)
    3.7e-13   49.8   0.0    9.6e-13   48.5   0.0    1.7  1  Helicase_C   Helicase conserved C-terminal domain
    7.2e-07   29.1   0.1    1.7e-06   27.9   0.1    1.6  1  DEAD         DEAD/DEAH box helicase
      2e-06   28.1   0.0    6.5e-06   26.5   0.0    1.8  1  AAA_22       AAA domain
    6.3e-05   22.2   0.0    0.00015   20.9   0.0    1.6  1  T2SSE        Type II/IV secretion system protein
    8.6e-05   22.3   0.2    0.00021   21.0   0.2    1.6  1  AAA_30       AAA domain
     0.0017   18.7   0.2      0.004   17.5   0.2    1.6  1  AAA_19       AAA domain
  ------ inclusion threshold ------
      0.022   14.4   0.3      0.053   13.1   0.3    1.7  1  SRP54        SRP54-type protein, GTPase domain
      0.025   14.0   0.0      0.072   12.5   0.0    1.7  1  PhoH         PhoH-like protein
      0.071   13.6   0.1      0.071   13.6   0.1    3.9  2  AAA_23       AAA domain
       0.11   12.4   0.0       0.24   11.3   0.0    1.5  1  RsgA_GTPase  RsgA GTPase
       0.14   12.7   0.0       0.14   12.7   0.0    2.2  2  ABC_tran     ABC transporter


Domain annotation for each model (and alignments):
>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.0   2.1e-24   2.9e-21       1      83 []     864     947 ..     864     947 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 2.1e-24
                  HHHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTT.T...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHHSTTT CS
  OB_NTP_bind   1 lraillaGlypqiarkdpskkdyktartktrvfihpsSvlak.nekekepewvvytelvettklylrdltaidpawLllfagqi 83 
                  ++++++aG++p+ ar ++ + +y+t ++++ v++hpsS+l +   ++  p+wv+y+elv t+k y+r+ ++++p+wL++ a+++
   KKY22988.1 864 IQKAITAGFFPNAARLQRGGDSYRTIKNGQSVYLHPSSTLMQdGGMANAPKWVIYYELVLTSKEYMRGNMPLQPEWLVEAAPHY 947
                  799***********99999999********************98999********************************99986 PP

>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.4       1.8   2.5e+03      77     104 ..     221     267 ..     202     269 .. 0.56
   2 !   56.3   0.0   2.5e-18   3.4e-15       1     107 [.     714     803 ..     714     806 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.8
         HA2  77 e.............e....eekakkkrkeeekarrklahkda..egD 104
                 +             +    +e+++++r++++ka+++  +++   egD
  KKY22988.1 221 DalykryvdrdehgRerfvTEHEEWEREQATKAKAQITRAEYvdEGD 267
                 23444444433333134556666666666666666666666566777 PP

  == domain 2  score: 56.3 bits;  conditional E-value: 2.5e-18
         HA2   1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsv.eeifleeneeekeeeeeeeekakkkrkeeekarrklah 98 
                 +le L+algA +++g+lT+ Gr+mae+P +p+l+  +laa ++  gc++e+++i+++l   + +f ++++++   +      ++++r+ +++       
  KKY22988.1 714 SLESLYALGAFNNQGDLTKKGRQMAEFPTDPKLSASILAADKY--GCVEEILSIISMLGEsSALFYRPKDKKIHAD------SARARFTIKE------- 797
                 6899************************************777..*************973556666665443322......2222222222....... PP

         HA2  99 kdaegDhlt 107
                     gDhl+
  KKY22988.1 798 ---GGDHLS 803
                 ...377765 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   6.9e-16   9.6e-13      12     111 .]     526     652 ..     514     652 .. 0.85

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 6.9e-16
                 HTTTTSEEEEEESSHHHHHH.....HHHHHHHT........TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSS. CS
  Helicase_C  12 leeeggkilifvntidrlek.....vklllekk........gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprn. 96 
                  ++  g+il+f++ ++++e       +              ++ +++++++lp++ + +i+e    g +++++at++ae++++i+++ +Vi+ ++ ++ 
  KKY22988.1 526 ISQGAGDILVFLTGQEEIEAaeqnlQET----LkklgskvpEMIICPIYANLPSELQTKIFEPTPPGARKIVLATNIAETSLTIDGIVYVIDPGFVKEn 620
                 4677899*********887764454233....1223566789******************************************************552 PP

                 H.................HHHHHHHTTSSSTT CS
  Helicase_C  97 v.................tsyiqriGRtgRag 111
                 v                 +s+ qr+GR+gR+g
  KKY22988.1 621 VynprtgmeslvvtpcsrASAGQRAGRAGRVG 652
                 4677999999********************97 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.1   1.3e-09   1.7e-06       4     170 ..     327     478 ..     324     484 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.3e-09
                 HHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   4 QaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivv 102
                  ++ i++i + + +++ +eTGsGKT+     + ++     +k g k+ +  P r  a  ++ ++ + +     ++   +g  + r + ++   ++ + +
  KKY22988.1 327 RDQLIEAIQEHQILIIVGETGSGKTTQLPQYLHEAG---LTKGGLKVGCTQPRRVAAMSVAARVAEEMGV---KLGNEVG-YSIRFEDKTS-DKTVLKY 417
                 5788999999999************99666666555...57**********************9888883...3333333.4444444444.4466789 PP

                 EEHHHHHH.HHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 103 gtpgrldd.llstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                 +t g+l++ ll++ +  ls  + l +DEa++       d    +l+ ++++  d k    +++ SAT+ 
  KKY22988.1 418 MTDGMLLReLLTDPE--LSAYSALMIDEAHERTVA--TDVAMGLLKDIARARPDLK----LLISSATMD 478
                 9****9995556556..**************9997..8999999999988888877....*******97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   4.7e-09   6.5e-06       4     117 ..     336     463 ..     332     478 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 4.7e-09
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst..sskdllrellralglelka..................erlsseelleal 82 
                 +++il+++Ge+G+GKTt l ++l+++          ++ ++v ++++      +++ ++++++g++l +                  +         ++
  KKY22988.1 336 EHQILIIVGETGSGKTTQLPQYLHEAGL-------TKGGLKVGCTQPRrvAAMSVAARVAEEMGVKLGNevgysirfedktsdktvlK---------YM 418
                 679**********************964.......88888999999998899999**********9999********86555444441.........44 PP

      AAA_22  83 eqalrarav........ielliiDEaqhlr..seealeeLrslln 117
                 ++ +  r           ++l+iDEa+  +  ++ a+  L++++ 
  KKY22988.1 419 TDGMLLRELltdpelsaYSALMIDEAHERTvaTDVAMGLLKDIAR 463
                 4444444444455566666********964455666666666655 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.1e-07   0.00015     115     152 ..     314     360 ..     274     366 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.1e-07
       T2SSE 115 k.........ekiaevlrkavrerglilvsGgTgsGKttllyallke 152
                            ++++ l +a++e++++++ G TgsGKtt l   l+e
  KKY22988.1 314 IeetrkslpvYQYRDQLIEAIQEHQILIIVGETGSGKTTQLPQYLHE 360
                 133334444467788899999*******************9888876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.2   1.6e-07   0.00021      16     114 ..     335     463 ..     326     472 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.6e-07
      AAA_30  16 sgdrvavltGpAGtGKttalkal.reaweaag.........grviglAptgkaAkvLaeelg........ieastiakllkrlk.............gr 83 
                 +++++ +++G  G+GKtt l ++  ea  ++g         +rv++++  +++A++++ +lg        +e +t +k +                   
  KKY22988.1 335 QEHQILIIVGETGSGKTTQLPQYlHEAGLTKGglkvgctqpRRVAAMSVAARVAEEMGVKLGnevgysirFEDKTSDKTV---LkymtdgmllrellTD 430
                 34569***************9987777666656*************************6555222222222333333222...0233456666666655 PP

      AAA_30  84 arlepgtllivDEag..mvdtkqlaallkaaek 114
                  +l++ + l++DEa    v+t+ +  llk +++
  KKY22988.1 431 PELSAYSALMIDEAHerTVATDVAMGLLKDIAR 463
                 6899999******96224677777777777665 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   2.9e-06     0.004       8     127 ..     335     463 ..     328     472 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.9e-06
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhivallvelggv.kp.....eeillvaftgrAakelrerlaalgae........atTiHrlalldfddlltealelle 92 
                  ++++l++++  G+GKT+ l + ++++  ++g  k+     +++++++++ r a+e+  +l   g e         +T  +  +l++ ++      ll+
  KKY22988.1 335 QEHQILIIVGETGSGKTTQLPQYLHEAGLTKGGlKVgctqpRRVAAMSVAARVAEEMGVKL---GNEvgysirfeDKTSDKT-VLKYMTDG----MLLR 425
                 577899999***********99998876555430224444489999999999999998887...444556666665555555.23333333....2445 PP

      AAA_19  93 eaeeekklqeee.llivDEfqd..vd.elqyrLlkallg 127
                 e  ++ +l +++ +l++DE+ +  v  ++++ Llk ++ 
  KKY22988.1 426 ELLTDPEL-SAYsALMIDEAHErtVAtDVAMGLLKDIAR 463
                 66677889.5555******98633446778888888875 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3   3.8e-05     0.053       2      62 ..     338     406 ..     337     492 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.8e-05
                 EEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEE........S CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvik........k 62 
                 +++++vG +G+GKTt l +  +     +  + + ++   R+aA+   + +ae++gv++ +        +
  KKY22988.1 338 QILIIVGETGSGKTTQLPQYLHEAGLTKGGLKVGCTQPRRVAAMSVAARVAEEMGVKLGNevgysirfE 406
                 5789***************999999999999999*********************99765444444441 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.2e-05     0.072      10      33 ..     328     351 ..     322     356 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.2e-05
                 HHHHHHHHH-SEEEEE--TTSSTT CS
        PhoH  10 keylealkkndivfaiGpaGtGKt 33 
                 ++++ea+++++i++++G++G+GKt
  KKY22988.1 328 DQLIEAIQEHQILIIVGETGSGKT 351
                 6789*******************9 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   5.2e-05     0.071       9      34 ..     325     352 ..     322     354 .. 0.89
   2 ?   -1.7   0.8       2.5   3.5e+03     182     199 ..     540     557 ..     537     558 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.2e-05
      AAA_23   9 sfrdqeidF..skgltlItGpNGaGKTT 34 
                 ++rdq i+   ++ + +I+G++G+GKTT
  KKY22988.1 325 QYRDQLIEAiqEHQILIIVGETGSGKTT 352
                 5788888888899**************9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.5
      AAA_23 182 ekeleeleeeleeilkel 199
                 ++e+e+ e++l+e+lk+l
  KKY22988.1 540 QEEIEAAEQNLQETLKKL 557
                 789999999999999987 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00017      0.24      52     121 ..     292     359 ..     289     376 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
                  EEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  52 vlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallp 121
                  +l+K D + + + l+e +++ ++++ +   + +   +  ++l e++++ ++ ++vG++G GK+t + + l 
   KKY22988.1 292 MLSKEDKMMQLR-LDEAEQKAKSIEETRKSLPVY--QYRDQLIEAIQEhQILIIVGETGSGKTTQLPQYLH 359
                  588999988888.888888888886655555444..77888999998889*************97766655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.7       4.7   6.5e+03      90      90 ..     199     199 ..     132     320 .. 0.64
   2 ?   12.7   0.0    0.0001      0.14       8      41 ..     334     367 ..     328     420 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.7
                 H CS
                 x RF
    ABC_tran  90 s 90 
                 +
  KKY22988.1 199 D 199
                 1 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.0001
                 EETTSEEEEEESTTSSHHHHHHHHTTSS--SEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllkpteGe 41 
                 ++e +++ ivGe+G+GK+t l   +++   t+G 
  KKY22988.1 334 IQEHQILIIVGETGSGKTTQLPQYLHEAGLTKGG 367
                 7899***************886666666656655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (971 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1096  (0.06113); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.49
# Mc/sec: 6019.16
//
Query:       KKY22989.1  [L=828]
Description: hypothetical protein UCRPC4_g02994 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-82  277.0  24.4    1.5e-82  277.0  24.4    1.8  2  RSN1_7TM   Calcium-dependent channel, 7TM region, putative ph
    8.5e-39  132.8   6.7    3.6e-38  130.8   0.1    3.6  3  RSN1_TM    Late exocytosis, associated with Golgi transport
    8.8e-36  123.8   0.0    1.3e-35  123.2   0.0    1.3  1  PHM7_cyt   Cytosolic domain of 10TM putative phosphate transp
    1.1e-30  105.6   0.0    7.7e-30  102.9   0.0    2.2  2  PHM7_ext   Extracellular tail, of 10TM putative phosphate tra
  ------ inclusion threshold ------
      0.074   13.4   0.1       0.16   12.3   0.1    1.5  1  kleA_kleC  Uncharacterized KorC regulated protein A
      0.086   13.2   0.4       0.16   12.3   0.4    1.3  1  DUF4156    Domain of unknown function (DUF4156)


Domain annotation for each model (and alignments):
>> RSN1_7TM  Calcium-dependent channel, 7TM region, putative phosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.0  24.4   5.1e-86   1.5e-82       2     274 .]     355     627 ..     354     627 .. 0.99
   2 ?   -2.7   1.1         1     3e+03     214     236 ..     633     655 ..     631     659 .. 0.79

  Alignments for each domain:
  == domain 1  score: 277.0 bits;  conditional E-value: 5.1e-86
    RSN1_7TM   2 klivtlllvlliifwiipvafvgllsnletltkvlpflkkilelskkllsvvtgllPtlllslllallpiilrllsklqGalsrselelsvvskyfaFl 100
                 ++++  ++++++ifw+ipva+vg++sn+++l ++lp+l++i++ ++ ll+++t+ lP+++l++l++llp+ lrl++kl G ++ s++el++++ yf+F+
  KKY22989.1 355 NVVTISAVCATVIFWSIPVAVVGAISNINYLIEKLPWLSFINNCPSVLLGLITNALPSVMLAVLMSLLPVYLRLMAKLGGLPTLSTIELRTQTSYFWFQ 453
                 66778899******************************************************************************************* PP

    RSN1_7TM 101 vvnvFlvftlagtalslleeiidnptsipkllaeslpkasnFfityillqglagaaleLlqlvklilflikrkflsktprdlaerytkppsfdygteyp 199
                 v++vFlv+t++++a+s++++iid+p s+ +lla++lp asnF+i+y++lqgla+++ +Ll +v++ilf + +k+l++tpr++++r+ +++ +++gt +p
  KKY22989.1 454 VIQVFLVTTFTSAASSVVSSIIDDPSSATTLLAQNLPTASNFYISYFILQGLAFSGSALLHIVGVILFRVLGKLLDNTPRKMYKRWITLSGMSWGTIFP 552
                 *************************************************************************************************** PP

    RSN1_7TM 200 kvllifvialiYsviaPlilpfaliyfllgylvykyqllyvydtkyesgGklwpralnrllvglvlfqllliglf 274
                 ++++++vi ++Ys iaPl++ fa+i + l yl+y+y+ll+v  +  +++G ++ +al+++ vg++l+ ++liglf
  KKY22989.1 553 VLSNLVVISIAYSAIAPLVMGFATIGLYLFYLAYRYNLLFVNASGIDTKGLVYAKALQHVTVGCYLSVICLIGLF 627
                 *************************************************************************98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1
    RSN1_7TM 214 iaPlilpfaliyfllgylvykyq 236
                 i Plil+++  +f++ y +  + 
  KKY22989.1 633 IGPLILMIIFGIFMILYHISLNA 655
                 67999999999999999887665 PP

>> RSN1_TM  Late exocytosis, associated with Golgi transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.8   0.1   1.2e-41   3.6e-38      29     156 .]       4     125 ..       2     125 .. 0.95
   2 ?    3.3   0.4     0.021        63      93     149 ..     414     464 ..     402     468 .. 0.78
   3 ?   -0.8   0.1      0.39   1.2e+03       8      32 ..     637     663 ..     616     681 .. 0.70

  Alignments for each domain:
  == domain 1  score: 130.8 bits;  conditional E-value: 1.2e-41
     RSN1_TM  29 rvYaprtylkg..eeertpplpqkglfgWipallkisdeeilekaGLDayvflrflkmlikiflvlavlalivLlPvnatggegedskesksgldklsi 125
                 r Yaprtyl g  e++rtp+l+ + lfgW++++ ki+d+ +l++++LD+y++lrflk+++ i++v++++++++L+Pvnatgg+g+      ++l+ ls+
  KKY22989.1   4 RQYAPRTYLGGirESDRTPRLS-RTLFGWFKEMQKIPDTFVLQHNSLDGYFLLRFLKISVAICFVGCCITWPILFPVNATGGAGK------TQLNILSF 95 
                 78*******99*7777777776.*************************************************************9......79****** PP

     RSN1_TM 126 snvsegsnrlwahvvvayiftglvlyllyre 156
                 +nv +++nr++ah++va+if+g+v+++++re
  KKY22989.1  96 TNV-ADKNRYYAHTFVAWIFIGFVFFMITRE 125
                 ***.888*********************997 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.021
     RSN1_TM  93 avlalivLlPvnatggegedskesksgldklsisnvsegsnrlwahvvvayiftglv 149
                 ++ +l+ LlPv+ +  ++        gl +ls  +++++++++w +v+ ++++t ++
  KKY22989.1 414 MLAVLMSLLPVYLRLMAKL------GGLPTLSTIELRTQTSYFWFQVIQVFLVTTFT 464
                 4555666888888776666......4788888888999**************99987 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.39
     RSN1_TM   8 inlvlalvflllFlilRkk..nkrvYa 32 
                 i ++++++f++l+ i  +   n+ +Y+
  KKY22989.1 637 ILMIIFGIFMILYHISLNAaiNPLLYY 663
                 456677777777777666666776665 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   0.0   4.5e-39   1.3e-35       1     176 []     148     343 ..     148     343 .. 0.92

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 4.5e-39
    PHM7_cyt   1 srTvlvtgiPkelrseeklkeffeelypgkvvesvqivrdvkkldklveerekavrkleaalskykkngkklpkkr....................... 76 
                 srTvl++++P+ +++ e+++++f +     ++++ +i+ dvk+l+k v er+k+++kle a++k++k++++l+  +                       
  KKY22989.1 148 SRTVLFSSVPDAYLQPERIRRMFGS-----QMKNFWIASDVKELEKKVSERDKIAMKLEGAETKLIKTANTLR-LKaakkggntengvesngdaelggd 240
                 79*********************76.....46899**********************************9984.335999******************* PP

    PHM7_cyt  77 ..............pthklgflglkligkkvdaidyyrekleeldeeieeerekv...kkkplgaaFvtfesersaaavakqakcaaqiqqssnptl.k 157
                               pth+l+     ligkkvd+i++ r++le+l++eie+ ++ +   ++k+ +++Fv+f ++++a+a++       q+ ++++  + +
  KKY22989.1 241 sgsvaaryikpkqrPTHRLKP----LIGKKVDTINWSRSELERLNPEIEADQAIHragEAKTVSSIFVEFYTQNDAQAAY-------QMLAHHQALHmS 328
                 **********99999999996....69**************************9865566889***************97.......667777787778 PP

    PHM7_cyt 158 pkkwtvelAPePrDviWeN 176
                 p+ +  +    P++v+W+N
  KKY22989.1 329 PRVIGLT----PDEVVWSN 343
                 9999999....*******9 PP

>> PHM7_ext  Extracellular tail, of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.61   1.8e+03      35      62 ..     158     190 ..     154     212 .. 0.68
   2 !  102.9   0.0   2.6e-33   7.7e-30       1      88 [.     726     816 ..     726     822 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.61
    PHM7_ext  35 kaYlhPa.....vtskepllWiprDpagvSkqe 62 
                 +aYl+P+     + s+    Wi+ D   + k+ 
  KKY22989.1 158 DAYLQPErirrmFGSQMKNFWIASDVKELEKKV 190
                 567777655555778888899999976665544 PP

  == domain 2  score: 102.9 bits;  conditional E-value: 2.6e-33
    PHM7_ext   1 FlkpeiyasyaalrkllpeeyneeeeeyeeelekkaYlhPavtskepllWiprDpagvSkqeieetekvigisdegaeldekgkvew.....t 88 
                 F++p+iy++ya+lr+l+p++  e    y++e+e++aY+hP++ts +pllWiprD +g+S+qe+++t kv +i+dega +dekgk+ w     +
  KKY22989.1 726 FFRPDIYCDYATLRRLVPSSGPEI--IYDPEIERNAYYHPSITSSPPLLWIPRDIMGISRQEVAHTIKVNPITDEGAGFDEKGKLFWdmesrD 816
                 9******************88877..9************************************************************554442 PP

>> kleA_kleC  Uncharacterized KorC regulated protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   5.5e-05      0.16      20      52 ..     190     223 ..     178     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.5e-05
   kleA_kleC  20 varRdkiAaklaeAe.eLvrqaeeLRakvyeesa 52 
                 v++RdkiA kl+ Ae  L + a+ LR k+ +++ 
  KKY22989.1 190 VSERDKIAMKLEGAEtKLIKTANTLRLKAAKKGG 223
                 689***********856***********998776 PP

>> DUF4156  Domain of unknown function (DUF4156)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   5.5e-05      0.16      29      71 ..     190     232 ..     187     247 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.5e-05
     DUF4156  29 gsqgnwlsgiftsnkelvrgaandLrneAaalGgntivlvtst 71 
                 +s+++++   ++  +++++++an+Lr +Aa+ Ggnt  +v+s+
  KKY22989.1 190 VSERDKIAMKLEGAETKLIKTANTLRLKAAKKGGNTENGVESN 232
                 56777777888899999******************97777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (828 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.85u 0.36s 00:00:01.21 Elapsed: 00:00:00.54
# Mc/sec: 4642.89
//
Query:       KKY22990.1  [L=401]
Description: putative glucokinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-78  262.9   0.0      3e-78  262.5   0.0    1.1  1  Hexokinase_2  Hexokinase
    3.6e-38  131.5   0.1    6.6e-38  130.6   0.1    1.5  1  Hexokinase_1  Hexokinase


Domain annotation for each model (and alignments):
>> Hexokinase_2  Hexokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.5   0.0   3.4e-82     3e-78       2     240 .]     128     391 ..     127     391 .. 0.92

  Alignments for each domain:
  == domain 1  score: 262.5 bits;  conditional E-value: 3.4e-82
                   EEEEESSSEEEEEEEEGGG-GGGTTTS....-TTSEEEEE--GGGTTTT-SS-..--HHHHHHHHHSSSTTS-HHHHCCSHHHHHHHHHHHHHHHHC CS
  Hexokinase_2   2 iGlIlGtGtNacyleklsnieklegkk....eksgemviNtEwgafgdegklpllrtkyDkeldeespnpgeqlfEkmiSGmYLGelvrlvlldlie 94 
                   +G+I+GtGtN++y+eklsn++k+e+ +    +++g m++NtEwg+f++e    ll tkyD  ld+es+npg q+fEk iSGm+LGe++r++lldl+ 
    KKY22990.1 128 LGAIFGTGTNGAYVEKLSNVKKMESMEgtydKSTGLMIVNTEWGSFDNE-LAVLLPTKYDTTLDKESVNPGIQMFEKQISGMFLGEILRRALLDLHA 223
                   69***********************99*******************984.466789***************************************** PP

                   .....TSSS..............C......CCCSTTSS-THHHHHHHC--BTT-HHHHHHHHHCCS---.-HHHHHHHHHHHHHHHHHHHHHHCHHH CS
  Hexokinase_2  95 ....ekllf..............kgkse..klktpysldteflseieedesedleevrevleellglesvteedleivrevceavsrRaarlvAagi 171
                       ++ lf              +  s+   l tp+++dt++ls +eed+s++l+ ++++le+ +g++++++ed+e+v+ v++a+++Raarl+A++i
    KKY22990.1 224 npdpNSALFkdansstndtgattN-ISPssPLFTPWGIDTSLLSLVEEDQSDHLRITKQILERDYGVHAPSTEDCEVVKLVAHAIGQRAARLAAVAI 319
                   887634677777777777766432.23356******************************************************************* PP

                   HHHHHH-......SSEEEEEESHHHHHSTTHHHHHHHHHHHH..HT--S.-SEEEEE---TTTHHHHHHHHH CS
  Hexokinase_2 172 aallkklgk.eekekvtvgvdGslyekypkfrerlqealrel..lgeepekkvklklaedGsgvGAAliaav 240
                    a++ +++k +e+e v++gvdGsl+e+yp+f++++++a+re+  +g e ek+++++la+dGsg+GAAlia+v
    KKY22990.1 320 GAIIVETNKlNEDEIVDIGVDGSLVEFYPGFENMMRQAFREIkeIGIEGEKRIRIGLAKDGSGLGAALIALV 391
                   ******99987778888*************************99888999********************86 PP

>> Hexokinase_1  Hexokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6   0.1   7.4e-42   6.6e-38      95     199 .]       3     118 ..       1     118 [. 0.97

  Alignments for each domain:
  == domain 1  score: 130.6 bits;  conditional E-value: 7.4e-42
                   GSBHHHHHHHHHHHHHHHHHHH....ST..T-...........S-EEEEEEE-SSEE-SBTT--EE-S--TT---TT-TTSBHHHHHHHHHHHTT-S CS
  Hexokinase_1  95 tgtaeeLFdfiakciaefleeegeekkeekee...........eelplGftFSFPveqtsldegtlirwtKgfaikdvegkdvvqllqealerkglp 180
                    +t++eLF+f+ak+i++fl+e++++++++++            + ++lGftFSFPv+q ++++g+l+rwtKgf++k+++g+dv+qllq++++  +lp
    KKY22990.1   3 AETSHELFSFLAKQIEAFLKEHHNDHFKAHKGrrankeevadeDLFDLGFTFSFPVNQVGINRGKLLRWTKGFDVKEAVGQDVCQLLQKEIDDLDLP 99 
                   4699**********************99987799********999**************************************************** PP

                   EEEEEEE-HHHHHHHHHHH CS
  Hexokinase_1 181 vkvvalvNDTvgtllslaY 199
                   vkv+alvNDTvg+l+s++Y
    KKY22990.1 100 VKVAALVNDTVGALMSRSY 118
                   *****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.51
# Mc/sec: 2345.84
//
Query:       KKY22991.1  [L=538]
Description: putative c2hc5 finger protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-20   73.1   7.1    2.2e-20   72.4   7.1    1.4  1  zf-C2HC5  Putative zinc finger motif, C2HC5-type


Domain annotation for each model (and alignments):
>> zf-C2HC5  Putative zinc finger motif, C2HC5-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   7.1   1.2e-24   2.2e-20       1      54 []     256     308 ..     256     308 .. 0.97

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 1.2e-24
    zf-C2HC5   1 rkkCnCqatrHpLleaapnClnCGkiiCakeglskpCsfCgspllsseerqelv 54 
                 r+kC C+at HpL+e apnCl+CG+iiC  egl +pCsfC+sp+l++++ q+++
  KKY22991.1 256 RRKCGCHATIHPLFEPAPNCLSCGQIICGLEGL-QPCSFCDSPILTPQQVQTMI 308
                 689******************************.*****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1109  (0.0618551); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 3450.09
//
Query:       KKY22992.1  [L=308]
Description: putative methyltransferase-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-11   44.6   0.0    1.9e-11   44.1   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    4.6e-06   27.3   0.0    1.9e-05   25.3   0.0    2.1  1  Methyltransf_25  Methyltransferase domain
    1.5e-05   25.7   0.0    3.1e-05   24.7   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    2.5e-05   24.1   0.0    7.3e-05   22.6   0.0    1.8  1  Methyltransf_31  Methyltransferase domain
    3.1e-05   24.5   0.0    0.00023   21.7   0.0    2.1  1  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.013   14.9   0.0      0.052   12.9   0.0    2.0  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   6.4e-15   1.9e-11      20     161 ..      78     269 ..      60     273 .. 0.77

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 6.4e-15
  Methyltransf_23  20 lraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqg..........................kfdlIv 87 
                        ++ r Ld++cG G+l+ ++ ++ ++ +g+D+s+++v+++ ++++a+++ ++  + a+ q                            fd++ 
       KKY22992.1  78 SIKPVRFLDYACGPGTLTAIFLPYITEAVGIDISENMVSMY-NTRFAEDSEAPTPNLAKLQPravvgnfcypdtetspsayltdpvyhNFDFAA 170
                      4455699*********************************9.77777777776665555444778888888888889999************** PP

  Methyltransf_23  88 lrevlehvpdppellrqiatllkpg.Gylllsep.lasl..............kedrllld.wlyl...vpag.....rhisffsarslkelle 156
                        ++++h++++p   +++ + l+p+ G++++ ++ ++++              +++++  +  + +   ++++     +h + f+ + +++ll 
       KKY22992.1 171 VGFGCHHFDNLPLCTSRLVSRLNPDgGVFMIADFfDKRSlssssppkhqtadgHHTHDTSHqAPSPpetDHRSsmygmTHPHGFTKEYVEKLLT 264
                      ***********************977*******62444478889998666666333332222222233333335556799999999******** PP

  Methyltransf_23 157 eaGle 161
                      +aGl+
       KKY22992.1 265 DAGLT 269
                      *9997 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   6.2e-09   1.9e-05       2      44 ..      85     127 ..      84     196 .. 0.70

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 6.2e-09
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHH..T CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraee..e 44 
                      Ld +cG+G+lt+ ++  +   + +g+Dise+m+   ++r++e  e
       KKY22992.1  85 LDYACGPGTLTAIFLPYI--TEAVGIDISENMVSMYNTRFAEdsE 127
                      9****************8..9****************99987541 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0     1e-08   3.1e-05       1      98 [.      85     197 ..      85     198 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg...................ssfDlvvasnv 75 
                      L+  cG G+l++ +l++   +e +g+Dis++++    +++a+ ++  + n+   +  +    g+                   + fD   + + 
       KKY22992.1  85 LDYACGPGTLTAIFLPY--ITEAVGIDISENMVSMYNTRFAEDSEAPTPNLAKLQPRAV--VGNfcypdtetspsayltdpvyHNFDFAAVGFG 174
                      7889*************..**************88888888888765555555544443..3446799999*********************** PP

  Methyltransf_12  76 lhhlkdirevldnirklLkpgGr 98 
                      +hh++++    +++ + L+p+G 
       KKY22992.1 175 CHHFDNLPLCTSRLVSRLNPDGG 197
                      ********************995 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.4e-08   7.3e-05       4     113 ..      81     205 ..      79     267 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.4e-08
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielAre...........naqklgld..nveFeqgdieelekl.led...ekfDlils 80 
                       +r+lD++CG G+lt  +   +    e vGiDise++++  ++           n++kl+      +F+  d e+ +++ l+d    +fD+   
       KKY22992.1  81 PVRFLDYACGPGTLTAIFLPYIT---EAVGIDISENMVSMYNTrfaedseaptpNLAKLQPRavVGNFCYPDTETSPSAyLTDpvyHNFDFAAV 171
                      5789**************97653...59**********98888778888889998888888844447999999999999888888888888555 PP

  Methyltransf_31  81 nevlnaladpdkile.eiervlkpggilliedpr 113
                         ++++ +++ +    ++r+  +gg+++i+d+ 
       KKY22992.1 172 GFGCHHFDNLPLCTSrLVSRLNPDGGVFMIADFF 205
                      4444777777766662555566666777877765 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   7.7e-08   0.00023       1      94 [.      85     198 ..      85     200 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 7.7e-08
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.........EEEE.....TTEECCCTS...S-T...T-EEEEEEES-CCC- CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl.........kvef.....vvadaeklp...fed...nsfDlvvssevlhhv 74 
                      Ld +cG G l++ +  + ++ vg+D+s++m+ + +++  e+ +         + +         d e+ p   + d   + fD+  + +  hh+
       KKY22992.1  85 LDYACGPGTLTAIFLPYITEAVGIDISENMVSMYNTRFAEDSEaptpnlaklQPRAvvgnfCYPDTETSPsayLTDpvyHNFDFAAVGFGCHHF 178
                      899************999*************999888888887777777766333322332222333333333444333599999999999999 PP

                      CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11  75 edpekalkeiaRvLkpgGll 94 
                      +++  + + ++  L p+G +
       KKY22992.1 179 DNLPLCTSRLVSRLNPDGGV 198
                      99999999999999999865 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.7e-05     0.052      45      97 ..      78     127 ..      69     208 .. 0.85
   2 ?   -3.8   0.0       2.2   6.5e+03     202     217 ..     257     272 ..     255     276 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.7e-05
                      S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTS CS
  Ubie_methyltran  45 vkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegk 97 
                      + ++ ++lD a+G g l++ ++  + e    v++Di+enm+++ + +  e++ 
       KKY22992.1  78 SIKPVRFLDYACGPGTLTAIFLPYITE---AVGIDISENMVSMYNTRFAEDSE 127
                      457789****************99986...5799*********9999887765 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.2
                      HHHHHHHHHTTEEEEE CS
  Ubie_methyltran 202 etlkeliedaGfksve 217
                      e +++l+ daG+++++
       KKY22992.1 257 EYVEKLLTDAGLTEIK 272
                      567899999*999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1955.16
//
Query:       KKY22993.1  [L=1286]
Description: putative phospholipid-translocating p-type atpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-48  165.0   8.0    2.5e-48  165.0   8.0    2.2  2  PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-t
    2.1e-16   59.3   0.7    4.9e-16   58.2   0.7    1.6  1  PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
    1.9e-12   47.9   3.1    3.5e-07   30.7   1.7    3.7  3  Hydrolase        haloacid dehalogenase-like hydrolase
    2.8e-07   30.5   1.0    0.00018   21.5   0.0    4.4  4  Cation_ATPase    Cation transport ATPase (P-type)
    0.00022   20.8   9.7      0.012   15.1   0.0    2.8  3  E1-E2_ATPase     E1-E2 ATPase
     0.0088   15.8   0.0      0.022   14.5   0.0    1.6  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.12   12.3   0.1       0.26   11.3   0.1    1.4  1  HIGH_NTase1_ass  Cytidyltransferase-related C-terminal region


Domain annotation for each model (and alignments):
>> PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.3      0.15   3.8e+02     147     192 ..     518     563 ..     464     588 .. 0.66
   2 !  165.0   8.0   9.7e-52   2.5e-48       2     248 ..    1049    1277 ..    1048    1278 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.15
  PhoLip_ATPase_C 147 tndlqlfgtlvftalvlvvnlkvaletktwtliliililgsillyf 192
                      +n  + + +l+ t+++++v l+ +  t+   +++ il+++ +++ +
       KKY22993.1 518 NNLTKILCALTLTISIILVALEGFQPTNDKPWYVAILMYLILFSTI 563
                      3444456677788888888888888899888887777777443333 PP

  == domain 2  score: 165.0 bits;  conditional E-value: 9.7e-52
  PhoLip_ATPase_C    2 raSDyaiaqFrfLkrLLlvhGrwsyrRisklilyffyKnvvftlvqfwfqfyngfsgqslyeswlltlynllftslpvivlgifdqdvsael 93  
                        a+D++i+qF++L++LL++hGr+sy+R +kl ++++++ +++ ++q ++++ + f    l+ +wll+ y +++t+ pv+ l +fd+dv+++l
       KKY22993.1 1049 LAADFSITQFCHLTKLLVWHGRNSYKRSAKLAQFIIHRGLIIAVCQTMYSIASHFDPDGLFIDWLLVGYATVYTMAPVFSL-VFDRDVDESL 1139
                       69*****************************************************************************99.********** PP

  PhoLip_ATPase_C   94 llkyPelYklgqknklfnlktfllwileglyqsliifflsylvlddssfsdgktndlqlfgtlvftalvlvvnlkvaletktwtliliilil 185 
                       +  yPelYk++++++ ++++tf++w++ ++yq++ii  ls +++++         +   +  ++ft+l+l  +++va+ ++tw+ i+i++i+
       KKY22993.1 1140 ANLYPELYKELKTGQSLSYTTFFTWVAVSIYQGCIIQGLSQILVHQV--------KGPRMISVSFTVLILNELIMVAVSVTTWHPIMIASIV 1223
                       ***************************************99998754........446778899**************************** PP

  PhoLip_ATPase_C  186 gsillyflflllyssllpsssefygvleelfsspsfwlvlllvvvvallpdllikvlkrtffp 248 
                       g+ ++y +++ ++  ++           e + ++ + + ++ v +++l+p +  k+++r+++p
       KKY22993.1 1224 GTAAIYAASVPFLGGYFD---------LEYIITWGWVWRVAAVAAISLVPVYGGKLIRRAWKP 1277
                       *************99654.........45566788888899999***************9998 PP

>> PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.7   1.9e-19   4.9e-16       9      62 ..     173     226 ..     161     231 .. 0.87

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 1.9e-19
  PhoLip_ATPase_N   9 nekkkyasNkIsTsKYtlltFlpknLfeqFrrvaNlYFLviailqliPqispls 62 
                      +++++y+ N +s++KYt ++Flp+ L+++F+ + N+YFL++a+ q++P ++   
       KKY22993.1 173 SQQRRYPANVVSNAKYTPWSFLPRTLYNEFSYFLNIYFLLVALSQILPFLRIGY 226
                      4467********************************************776655 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.99   2.5e+03     119     155 ..     294     332 ..     244     356 .. 0.81
   2 !   30.7   1.7   1.4e-10   3.5e-07       3     173 ..     608     942 ..     606     963 .. 0.69
   3 !   12.2   0.0   6.4e-05      0.16     175     210 .]     998    1034 ..     990    1034 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.99
                 BHTTHHHHHHHHHHTTE.EEEEEESSEHHHHH.HHHHHT CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.xxxxxx RF
   Hydrolase 119 vkpeaaeavasLkaagi.evvlltgdnpetae.raanql 155
                   p++ +++++ ++ ++ ++  lt +++ +a+  +++ +
  KKY22993.1 294 DEPGTWDVIKRARDLKVgDILKLTKNQRLPADvVILKSI 332
                 55899999999999999999*******999997766664 PP

  == domain 2  score: 30.7 bits;  conditional E-value: 1.4e-10
                 EEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTE...........................HHHHTHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........................xxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrg...........................ayaigkp 74 
                  ++ Dk+GTLt+ e++++++ v                      v +a++  +++  +++ +g+                            +      
  KKY22993.1 608 YLLSDKTGTLTQNEMELKKIHVGT--------------------VSYANEAMEEVMTYTK-QGFStssndalapmtlitpssshnsqsnivsT------ 679
                 6789***************99999....................5555555444422222.12212222223333333333333333333330...... PP

                 HHHHHHHCHHHHHHHHHHHHHHCHHHHHH...................................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................................................... RF
   Hydrolase  75 ewltaldippdlgaaigsaqsqgrtvall...................................................................... 103
                                                                                                                    
  KKY22993.1 680 ----------------------------Trtrreigsrvrdlvlalalchnvtpttdeidgqnvvtyqasspdeiaivryteavglrllhrdrksialq 750
                 ............................22222222233333333333333333333333333333344444444444566666666666666666666 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
   Hydrolase 104 ................................................................................................... 103
                                                                                                                    
  KKY22993.1 751 svdsgkvvvrvkildnfpftsdskrmgiivqfiggaetvgntgnldseiwfyqkgadtvmtsivaandwldeetanmareglrtlvvgrkrlstteyea 849
                 666666667778888888888888888888888888888888888899999999999999999999999999999999999999999************ PP

                 .............................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTT CS
                 .............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 104 .............................qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdietvak 173
                                              + ++l+v  ++d+  + ++++  ++ L+ ag+++++ltgd  eta+ +a  +      +  +++i+t+ak
  KKY22993.1 850 fsseykiaslalqnrdtgmasvvkrhlehDLELLGVTGVEDK--LQKDVKTSLELLRNAGVKIWMLTGDKVETARCVAISAK----LVARGQYIHTIAK 942
                 *****************************99***********..*******************************8887766....2233334555554 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 6.4e-05
                  SHHHHHHHHHHHT.STGGGEEEEESSHHHHHHHHHTT CS
                  xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  175 spegkvaaireLq.gkpeevamVGDgvnDaaalaaAg 210 
                  sp +k +++  ++    ++v+ +GDg nD+++++aA+
  KKY22993.1  998 SPTQKAEVAYLIRqHTHKRVCCIGDGGNDVSMIQAAD 1034
                  5666666666664256889****************98 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.62   1.6e+03       9      48 ..     482     523 ..     454     530 .. 0.72
   2 !   21.5   0.0   6.9e-08   0.00018       3      84 ..     700     810 ..     698     814 .. 0.78
   3 ?   -1.1   0.0      0.78     2e+03      53      78 ..     849     873 ..     838     875 .. 0.78
   4 ?    2.6   0.0     0.054   1.4e+02       9      30 ..     945     966 ..     897     989 .. 0.56

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.62
  Cation_ATPase   9 sensekdevkllGnktEsALlvlaekl..gldteelreetkk 48 
                    s++ + ++  ++G++t sAL   a++   gl  ee+++ tk+
     KKY22993.1 482 SNTTTLAVIIYTGSQTRSALSTSASRSktGLLEEEINNLTKI 523
                    45555666779*********9998877555556666655555 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 6.9e-08
  Cation_ATPase   3 cNsaaf...sensekdevkllGnktEsALlvlaekl...............gldteelreetkkvqeipFnssrKrmsvvlkle...........p 69 
                    c++ +    + + ++ ++    +++E+A+++++e++               + d  ++  + k++  +pF+s+ Krm+++++              
     KKY22993.1 700 CHNVTPttdEIDGQNVVTYQASSPDEIAIVRYTEAVglrllhrdrksialqSVDSGKVVVRVKILDNFPFTSDSKRMGIIVQFIggaetvgntgnL 795
                    55555544344455566677899*************7777777777666666666666666********************988899999999888 PP

  Cation_ATPase  70 ekkvrlyvKGApeii 84 
                    ++++  y KGA  ++
     KKY22993.1 796 DSEIWFYQKGADTVM 810
                    888999999987665 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.78
  Cation_ATPase  53 pFnssrKrmsvvlklepekkvrlyvK 78 
                     F+s+ K++s +l+++ + ++  +vK
     KKY22993.1 849 AFSSEYKIASLALQNR-DTGMASVVK 873
                    6*************97.666666665 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.054
  Cation_ATPase   9 sensekdevkllGnktEsALlv 30 
                    ++ + +d+ ++l nkt+sALl 
     KKY22993.1 945 QKAAAQDALDFLRNKTDSALLI 966
                    3334444555555666666655 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.9e-06     0.012      18      46 ..     303     331 ..     279     361 .. 0.84
   2 !   11.6   0.5   5.6e-05      0.14      69     165 ..     473     570 ..     458     581 .. 0.75
   3 ?   -5.2   2.1         7   1.8e+04     153     171 ..    1195    1213 ..    1158    1234 .. 0.48

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.9e-06
                   EEGGG--TTSEEEEETT-B--SEEEEEEE CS
  E1-E2_ATPase  18 idakelvpGDivllkagdrvpaDgriveg 46 
                    +a++l++GDi++l +++r paD++i+++
    KKY22993.1 303 KRARDLKVGDILKLTKNQRLPADVVILKS 331
                   4699**********************986 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 5.6e-05
                   EE-TT-EEEE.-EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT...HHHHHHHHHHHHHS-T CS
  E1-E2_ATPase  69 mvfsGtvvvs.geakavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla...eallralallvaaiPc 161
                   ++ + tv  s  +  av++ tg++t+    a ++++++sk+  l++++++l+k+l ++ l+i+++++++  +   +      a+l  l l+  +iP+
    KKY22993.1 473 TAWANTVLASnTTTLAVIIYTGSQTR---SALSTSASRSKTGLLEEEINNLTKILCALTLTISIILVALEGFQPTNDKpwyVAILMYLILFSTIIPI 566
                   55566666552445567777777774...456667777889999***********************999986666554457777788888888888 PP

                   THHH CS
  E1-E2_ATPase 162 aLpl 165
                    L +
    KKY22993.1 567 SLRV 570
                   8865 PP

  == domain 3  score: -5.2 bits;  conditional E-value: 7
                    HHHHHHS-TTHHHHHHHHH CS
  E1-E2_ATPase  153 allvaaiPcaLplavplal 171 
                    ++ v ++ + + +av++++
    KKY22993.1 1195 SFTVLILNELIMVAVSVTT 1213
                    2222222222222222222 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       3.6   9.3e+03      18      43 ..     894     919 ..     890     955 .. 0.63
   2 !   14.5   0.0   8.8e-06     0.022     202     227 ..    1013    1038 ..    1000    1058 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3.6
                  HHHHHHHHHHHHTTSEEEEE-SS-HH CS
  Hydrolase_3  18 ektkeaikklkekgikvviATGRslr 43 
                  +  k  ++ l+++g+k+   TG +++
   KKY22993.1 894 KDVKTSLELLRNAGVKIWMLTGDKVE 919
                  44444455555555555555554444 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 8.8e-06
                   -GGGEEEEESSGGGHHHHHHSSEEEE CS
  Hydrolase_3  202 sleeviafGDgeNDieMLeaaglgvA 227 
                   ++++v  +GDg ND++M++aa++g+ 
   KKY22993.1 1013 THKRVCCIGDGGNDVSMIQAADVGIG 1038
                   578999***************99884 PP

>> HIGH_NTase1_ass  Cytidyltransferase-related C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1    0.0001      0.26      66     129 ..     581     645 ..     568     656 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0001
  HIGH_NTase1_ass  66 ifverieGvsGtkireavvegnlekvkdmlPeetievlkeelendn.pledirdeekiletvnel 129
                       f+er eG+  t +r + + ++l +++ +l ++t ++ ++e+e ++  +  + + ++ +e+v ++
       KKY22993.1 581 RFIERDEGIPDTVVRTSTIPEDLGRIEYLLSDKTGTLTQNEMELKKiHVGTVSYANEAMEEVMTY 645
                      59*************************************99988775666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.89u 0.35s 00:00:01.24 Elapsed: 00:00:00.50
# Mc/sec: 7735.20
//
Query:       KKY22994.1  [L=1665]
Description: putative copii coat assembly protein sec16 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.3e-104  348.8   0.0     5e-104  348.2   0.0    1.2  1  Sec16_C   Sec23-binding domain of Sec16
    2.8e-19   69.9   0.1    9.3e-19   68.2   0.1    1.9  1  Sec16     Vesicle coat trafficking protein Sec16 mid-region
    2.6e-09   37.6  24.2    3.8e-09   37.1  10.5    4.3  5  Sec16_N   Vesicle coat trafficking protein Sec16 N-terminus


Domain annotation for each model (and alignments):
>> Sec16_C  Sec23-binding domain of Sec16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  348.2   0.0  8.4e-108    5e-104       1     301 [.     848    1149 ..     848    1150 .. 0.97

  Alignments for each domain:
  == domain 1  score: 348.2 bits;  conditional E-value: 8.4e-108
                  HHHHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHH---..---THHHHHHHHHHTTT-HHHHHHHHHH................. CS
     Sec16_C    1 iqalLlrGdrekAlqlAldkklWahAlliasllgkelwkevvqefvrselk.egensesLrvlyqvfaGnseeavdelvptsaraslq......qae 90  
                  i+ +Ll+G+rekA++ A+d++lWahA+lias+l++ +wk+vvqefvr+e+k  gen+esL++lyq+faGn e+++d+lvp+sara+lq      +++
  KKY22994.1  848 IRIFLLHGEREKAVWDAVDHRLWAHAMLIASTLDRTVWKQVVQEFVRQEVKtVGENTESLAALYQCFAGNLEDSIDQLVPPSARAGLQmvskvaSNG 944 
                  6679***********************************************9999**************************************9999 PP

                  -HHHHHHHHHSHHHHHHHHHHTS--HHHHHHHHHHHHHHHTT-HHHHHHHHHHT..-SSS.............BSSTTS--B--SSSTTSHHHHHHH CS
     Sec16_C   91 eskeaeealdkWretvalvlsnrspsdseaLtalGdlLaskgrveaahicylla..lsqtslfggldspsarlvllgadhvkfessfakdlesillt 185 
                  ++k+a ++l+kWret++l ++nr p+d+ a+ alG+lL+++ r+ea+hic+ll+  +++ + fgg+d+p+a++vllg d++  ++ f +d+++i+lt
  KKY22994.1  945 PTKNALDGLNKWRETLCLAVNNRCPDDHVAIAALGRLLMTYSRIEASHICFLLShaMPA-ATFGGADEPQANIVLLGVDQR--QPGFYNDEDAIILT 1038
                  ******************************************************86665.7*****************966..77789********* PP

                  HHHHHHH.HT....TT----CCCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTS-TTSHHHHH.HHHHHHHHHHHT-XXX.....XXX..XXXX CS
     Sec16_C  186 EiyEfalslspaakekfaglphLlayKllhAavLaelGlvseAqkYcdaiaaslksltkkspylhptlleqlkdLserLseapkedksssWlkiskp 282 
                  EiyEfa+s+ ++  +++a lphL+ yK+++A +Lae G ++eA +Yc+ai+ ++k++tk spy+hp ++++l+++ +rL++ap  ++sssW    kp
  KKY22994.1 1039 EIYEFATSVLASHVSTSALLPHLQGYKFQRAVMLAETGFKTEALQYCEAISGAVKAVTKVSPYFHPLFIAELDEFYNRLRQAPV-EASSSW----KP 1130
                  *********98877999******************************************************************8.667***....** PP

                  XXXXXXXXXXXXXXXXXXX CS
     Sec16_C  283 sldkvwgsleksfnkfvaG 301 
                  s++kv+gsl ++fn fv+G
  KKY22994.1 1131 SMEKVSGSLLSKFNTFVTG 1149
                  ******************9 PP

>> Sec16  Vesicle coat trafficking protein Sec16 mid-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.1   1.5e-22   9.3e-19      24     118 .]     693     788 ..     672     788 .. 0.88

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 1.5e-22
       Sec16  24 s.gssvsssksspgevkirslkelvpssedaskfPGPlvkgkskkkevlkwLserieeleaevay.aegelesaaarraeekllLlkllkllvehdG 118
                   g++++s+k++ ge+k++s ke++  +++a++fPGPl ++kskkkevl+wLseri+ le+     + +++  +      ek+lL+k+l+++vehdG
  KKY22994.1 693 ViGQALPSVKPTAGETKVSSAKEILNVDTQAARFPGPL-RSKSKKKEVLTWLSERISLLEQVNIAhSLEPQLPDPLTCRTEKVLLWKVLRIFVEHDG 788
                 337889********************************.*********************97666466777788899999****************9 PP

>> Sec16_N  Vesicle coat trafficking protein Sec16 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.2   6.8         3   1.8e+04      86      86 ..     114     114 ..      28     243 .. 0.56
   2 !   37.1  10.5   6.3e-13   3.8e-09       7     114 ..     258     366 ..     251     385 .. 0.78
   3 !   16.3   5.7   1.4e-06    0.0084     160     238 .]     389     463 ..     365     463 .. 0.66
   4 ?   -5.5   1.9         3   1.8e+04     209     238 .]    1256    1288 ..    1245    1288 .. 0.62
   5 ?   -4.2   2.5       2.6   1.6e+04      94     154 ..    1427    1462 ..    1401    1497 .. 0.47

  Alignments for each domain:
  == domain 1  score: -7.2 bits;  conditional E-value: 3
     Sec16_N  86 s 86 
                 +
  KKY22994.1 114 E 114
                 1 PP

  == domain 2  score: 37.1 bits;  conditional E-value: 6.3e-13
     Sec16_N   7 easdeedseddfFnqlktqtkPiyeppeaesrfeegvPlldnsdevpvee..eskqekqidsvFaeDleddeddFfssaskseskkeeepidkltrkst 103
                 e ++++d++ +fF+  +  +  i ep++ae+rfeegvPl+ + +e +  +  +    +++d +F+ D e  +  Ff++  ++e  +e+   ++l+rk t
  KKY22994.1 258 EGRGSKDEDASFFDNFNEHQDSINEPSDAEARFEEGVPLVAEHNEEEEANgiTGAGPSAMDALFHSDPEPSDVSFFNQPHQQEV-SEQDLRHNLERKDT 355
                 44566677778****************************9999986655511556789*********8888899**99877654.46666689****** PP

     Sec16_N 104 sqvldslkaia 114
                  +vl s+++ a
  KKY22994.1 356 VDVLSSMRFDA 366
                 ******99644 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 1.4e-06
     Sec16_N 160 devpeespveddLAerwkafLDdDDDlLlddeaeeanaaqqeeepeqstedstads.lsspfqtpqsrakpkaekntYtP 238
                 d  +++++  +d+ + wka+L+d D  L dd+    + + +   p  ++++s +++ +s+p+q p  +++    +++YtP
  KKY22994.1 389 D-PNPPAQ-QEDIDAMWKAALED-DEFLPDDDDGFLSDGSDGPFPGDQNDQSLQNApQSQPVQRPGVVSQR--APSSYTP 463
                 2.223333.99************.99999999988888887555555555555544278899999666644..6788998 PP

  == domain 4  score: -5.5 bits;  conditional E-value: 3
     Sec16_N  209 edstadslsspfq...tpqsrakpkaekntYtP 238 
                   +++a+sl sp+q   ++   ++p ++ ++Y P
  KKY22994.1 1256 ATTAAPSLASPYQglmQSPPQYQPSPPSSSYVP 1288
                  445555666665422123356889999999988 PP

  == domain 5  score: -4.2 bits;  conditional E-value: 2.6
     Sec16_N   94 pidkltrkstsqvldslkaiadspesddspaaedlaealaaaatekqeeksaSeedlaarw 154 
                   +d +   st+  + ++++  d +  d                         +e+d a r 
  KKY22994.1 1427 DNDPMSTASTMTAVKPVNKDLDRARKD-------------------------AEADAAFRH 1462
                  222222223333333333333333322.........................222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.55
# Mc/sec: 9156.87
//
Query:       KKY22995.1  [L=353]
Description: hypothetical protein UCRPC4_g03000 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-05   22.7   1.1       0.32   11.0   0.2    4.0  2  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C
    0.00056   19.9   2.5         30    4.6   0.0    5.3  4  Phasin        Poly(hydroxyalcanoate) granule associated prote
    0.00082   19.6  14.1        1.6    9.1   1.1    6.1  4  DUF948        Bacterial protein of unknown function (DUF948)
  ------ inclusion threshold ------
      0.062   13.5   7.4        2.8    8.1   0.1    4.7  7  HisG_C        HisG, C-terminal domain


Domain annotation for each model (and alignments):
>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.2   7.1e-05      0.32      45     118 ..      67     143 ..      24     168 .. 0.45
   2 !    7.2   0.1    0.0011       4.9      28      97 ..     223     296 ..     169     335 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.1e-05
  Baculo_PEP_C  45 tqLnalsedlksllaeldtrldtlltnLtdalnalq.dtlrneLtnlnsiltnLlssvtNi..nstLnnllqalnnl 118
                    + ++l+  + s + e++  + +++ +++  + + q +++ +    ++s + + + +v N+  +  Lnn+ ++++n 
    KKY22995.1  67 DVATSLEGTVGSTVGEVEGTVGSTVGEVEGLIPKRQlENVASTVGEVTSTVGSTVGEVENLvpKRQLNNVAATVENR 143
                   11112222233333333334444444444444443344444444444444444444444442223455555555554 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0011
  Baculo_PEP_C  28 qnvqilaqlatlldaietqLnal..sedlksllaeldtrldtlltnLtdalnalq..dtlrneLtnlnsiltnL 97 
                   q+++i+a ++  +d+  ++++++  + +lks++++++  ++ +++     + a+    +l+++L ++ s + n 
    KKY22995.1 223 QLTEIAAGVQGEVDSTVGEVESIlpKRQLKSAVSSVAGTVEGTVDGALGEVEAVVpkRQLNTALSGVASAVGNT 296
                   44555555555555555555544222445555555555555555444444444434555666666666555554 PP

>> Phasin  Poly(hydroxyalcanoate) granule associated protein (phasin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0067        30      50      91 ..      22      63 ..       2      73 .. 0.77
   2 ?    2.9   0.0     0.023     1e+02      63      87 ..     100     127 ..      62     136 .. 0.52
   3 ?    3.0   0.0     0.021        96      55      91 ..     133     169 ..     129     173 .. 0.85
   4 !    4.1   0.1    0.0099        44      57      90 ..     237     279 ..     194     310 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0067
      Phasin 50 ktkkvaeekleevresvkskveevkekaeeqwdklekafder 91
                 +++++ + +++v+++v s+v+ev++ + +++ ++ +++ +r
  KKY22995.1 22 LRRRQVGDVASTVETTVGSTVSEVESTVGSTVGEVGSLVPKR 63
                567888999999999999999999999999999999988766 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.023
      Phasin  63 r...esvkskveevkekaeeqwdkleka 87 
                 +   e+v s+v+ev++ + +++ ++e++
  KKY22995.1 100 KrqlENVASTVGEVTSTVGSTVGEVENL 127
                 0233444555555555555555555555 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.021
      Phasin  55 aeekleevresvkskveevkekaeeqwdklekafder 91 
                  ++ + +v++++ s+v+ev+  + +++ ++e+++ +r
  KKY22995.1 133 LNNVAATVENRAGSDVGEVTGTVGSTVGEVESLVPKR 169
                 56667889999999*****************998776 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.0099
      Phasin  57 ekleevr.........esvkskveevkekaeeqwdklekafde 90 
                 +++ ev+         ++v+s +++v+  +++++ ++e ++ +
  KKY22995.1 237 STVGEVEsilpkrqlkSAVSSVAGTVEGTVDGALGEVEAVVPK 279
                 3333333333332222444444444444445555566666554 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.2    0.0057        26      31      76 ..      38      82 ..      17     102 .. 0.69
   2 !    9.1   1.1   0.00035       1.6      26      85 ..     101     163 ..      97     189 .. 0.81
   3 !    6.1   0.1    0.0029        13      30      69 ..     196     237 ..     192     246 .. 0.79
   4 ?    3.5   0.5      0.02        89      30      30 ..     257     257 ..     222     340 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0057
      DUF948 31 aaatieelekqvdpilkevedllakvnelledvnekle.kvdpltea 76
                + +t+ e+e+ v++++ ev  l+ k +   +dv   le +v + + +
  KKY22995.1 38 VGSTVSEVESTVGSTVGEVGSLVPKRQL--DDVATSLEgTVGSTVGE 82
                4567888888888888888888877666..77777665344444444 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00035
      DUF948  26 ktldeaaatieelekqvdpilkevedllak..vnelledvnekl.ekvdplteavadlgesvs 85 
                 + l+++a+t+ e+++ v++++ eve+l+ k   n++++ v+++   +v ++t  v+ +   v+
  KKY22995.1 101 RQLENVASTVGEVTSTVGSTVGEVENLVPKrqLNNVAATVENRAgSDVGEVTGTVGSTVGEVE 163
                 67899**********************965227788888877542567777777766655555 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0029
      DUF948  30 eaaatieelekqvdpilkevedllak..vnelledvneklek 69 
                 +a++ ++++e+ v++++ eve++l k    e++++v++++++
  KKY22995.1 196 QASELVTTVENTVGSTVGEVEGALPKrqLTEIAAGVQGEVDS 237
                 6889999****************9771145688888887765 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.02
      DUF948  30 e 30 
                 +
  KKY22995.1 257 S 257
                 1 PP

>> HisG_C  HisG, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1    0.0054        24      16      60 ..      27      74 ..      22      83 .. 0.71
   2 ?    8.1   0.1   0.00063       2.8      11      54 ..      60     106 ..      56     116 .. 0.89
   3 ?    1.1   0.1       0.1   4.6e+02      34      66 ..     113     148 ..      98     152 .. 0.66
   4 ?    0.4   0.1      0.16   7.1e+02      12      50 ..     129     170 ..     124     212 .. 0.58
   5 ?   -1.5   0.0      0.63   2.8e+03      15      28 ..     184     197 ..     170     229 .. 0.64
   6 ?    4.6   0.1    0.0082        37      19      56 ..     242     287 ..     215     297 .. 0.68
   7 ?   -2.8   0.0       1.7   7.5e+03      15      32 ..     300     317 ..     291     321 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0054
                HHHHHHH---SSS-EEEE-....SS-EEEEEEEEECCCHHHHHHHHHC CS
      HisG_C 16 leevlkilPGlrsPTvspla...degwvaVsavveekevaevideLka 60
                + +v++ +    + Tvs+++    + + +V ++v+++++ +v   L+ 
  KKY22995.1 27 VGDVASTVETTVGSTVSEVEstvGSTVGEVGSLVPKRQLDDVATSLEG 74
                556666666666788888887777788888888888888888777764 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00063
                 EEGGGHHHHHHH---SSS-EEEE-....SS-EEEEEEEEECCCHHHH CS
      HisG_C  11 vpkesleevlkilPGlrsPTvspla...degwvaVsavveekevaev 54 
                 vpk +l++v++ l G  + Tv +++    + + +V+ +++++++ +v
  KKY22995.1  60 VPKRQLDDVATSLEGTVGSTVGEVEgtvGSTVGEVEGLIPKRQLENV 106
                 89**********************98888889999999999998876 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.1
                 -....SS-EEEEEEEEECCCHHHHHHHHHCTT-EEE CS
      HisG_C  34 la...degwvaVsavveekevaevideLkaaGAsdI 66 
                 +     + + +V+ +v+++++++v   +++  +sd+
  KKY22995.1 113 VTstvGSTVGEVENLVPKRQLNNVAATVENRAGSDV 148
                 433335556678888888888888877777777765 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.16
                 EGGGHHHHHHH---SSS-EEEE-....SS-EEEEEEEEECCC CS
      HisG_C  12 pkesleevlkilPGlrsPTvspla...degwvaVsavveeke 50 
                 pk +l++v++ +  + +  v ++     + + +V+++v++++
  KKY22995.1 129 PKRQLNNVAATVENRAGSDVGEVTgtvGSTVGEVESLVPKRQ 170
                 444444444443333333333333333333334444444444 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 0.63
                 GHHHHHHH---SSS CS
      HisG_C  15 sleevlkilPGlrs 28 
                  l+ev  ilP +++
  KKY22995.1 184 TLDEVEGILPRRQA 197
                 46666666665544 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.0082
                 HHHH---SS.S-EEEE-........SS-EEEEEEEEECCCHHHHHH CS
      HisG_C  19 vlkilPGlr.sPTvspla.......degwvaVsavveekevaevid 56 
                 v +ilP ++ +  vs++a       d    +V+avv+++++++++ 
  KKY22995.1 242 VESILPKRQlKSAVSSVAgtvegtvDGALGEVEAVVPKRQLNTALS 287
                 4444444433344555546666666778889999999999998775 PP

  == domain 7  score: -2.8 bits;  conditional E-value: 1.7
                 GHHHHHHH---SSS-EEE CS
      HisG_C  15 sleevlkilPGlrsPTvs 32 
                  + +v ++lP ++  Tv+
  KKY22995.1 300 VVTDVDELLPKRQLTTVA 317
                 566777888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 2278.37
//
Query:       KKY22996.1  [L=355]
Description: hypothetical protein UCRPC4_g03001 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-67  227.4   0.5    1.9e-67  226.9   0.5    1.2  1  Kei1      Inositolphosphorylceramide synthase subunit Kei1


Domain annotation for each model (and alignments):
>> Kei1  Inositolphosphorylceramide synthase subunit Kei1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.9   0.5   1.1e-71   1.9e-67       1     190 []      15     230 ..      15     230 .. 0.89

  Alignments for each domain:
  == domain 1  score: 226.9 bits;  conditional E-value: 1.1e-71
        Kei1   1 sflgilsLqtGaelilllallNKvaGlYGlLalltGaplsflqlsmylySllvlvllalllphirkesplkilllavlYllDtvistaytvlFavdWfl 99 
                 +fl+ +sL+tGaeli+l++l+NK++GlYGlLalltG++l+ lqlsmy+ySll+l+l+a+l+phir++spl++l+la++Y++D+vi+++yt++F+++Wfl
  KKY22996.1  15 TFLYTMSLRTGAELITLSLLVNKLSGLYGLLALLTGYHLNTLQLSMYIYSLLALALTAFLAPHIRRQSPLQCLALAWFYVIDSVINAVYTICFSITWFL 113
                 6************************************************************************************************** PP

        Kei1 100 vleehdaaaaastagsasaeatagatapa...................avssaasatsasvsaatss........................slasavlq 155
                 v+++h++ ++ + +g+ ++ +tag+t+p+                   +                 +                        sl+++vlq
  KKY22996.1 114 VISQHHHGEQVKGPGAGTIGDTAGFTNPQnnvsevhveatpasgiaagQ-----------------DavaagtpasvpagqdvsggsgsspSLGHGVLQ 195
                 *****************************77666655555444444430.................1344455555666666677777777******** PP

        Kei1 156 qEsaasiiiivllllvriYfalvllsyarqllkqs 190
                 +Es+ si +i++l++vr+Yf++++l++ar++l+q+
  KKY22996.1 196 PESMNSIGVICTLWTVRLYFCVIMLAWARSVLRQY 230
                 *********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 2134.68
//
Query:       KKY22997.1  [L=439]
Description: putative c6 zinc finger domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-10   40.8   0.3    2.7e-10   39.7   0.1    1.7  2  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.1   1.5e-14   2.7e-10      47     191 ..       5     132 ..       1     232 [. 0.79
   2 ?   -2.5   0.0      0.11     2e+03      38      64 ..     303     329 ..     291     369 .. 0.75

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 1.5e-14
  Fungal_trans  47 GalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwk 143
                   ++++s+s++++   ++ +            +i     f++p+s    +q+Llll++    s +++    +   a+ +a+ +g+hr+ +++    + +
    KKY22997.1   5 ASHYSSSANRRVLLQEAN----------TSSI-----FQVPDS-AFKVQALLLLAMDAYISLENSRGCEIQRQAIEIAKGIGMHRRDYSYL---VGQ 82 
                   555555555555333333..........3333.....568888.6678888888887777777777777999***************9999...667 PP

  Fungal_trans 144 lweeeaesrrRlwwaaFylDktialklGrpp..llddsqinlpLPcdddd 191
                   + +  +es+rR+ww ++ l  +++ ++G +   l + ++i++pLP   dd
    KKY22997.1  83 HGPIVQESWRRTWWDCYTLAALTSAIHGTNLveLVSLEDIDVPLPGPCDD 132
                   77777**************************999*********9855554 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.11
  Fungal_trans  38 llllailalGalfsesetkesnsslts 64 
                   + l a ++l+a+++es+  +s++ + +
    KKY22997.1 303 IALSATVHLPAYLLESDPTRSQTLKGR 329
                   456888999999999999888766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2920.78
//
Query:       KKY22998.1  [L=1281]
Description: hypothetical protein UCRPC4_g03003 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-78  263.6  33.9    2.7e-78  263.1  33.9    1.2  1  RSN1_7TM   Calcium-dependent channel, 7TM region, putative ph
    6.6e-44  149.4   0.8    6.6e-44  149.4   0.8    3.8  4  RSN1_TM    Late exocytosis, associated with Golgi transport
      2e-27   96.5   2.4    4.9e-16   59.5   0.0    2.6  2  PHM7_cyt   Cytosolic domain of 10TM putative phosphate transp
    4.9e-13   49.1   0.0    1.7e-12   47.3   0.0    2.0  1  PHM7_ext   Extracellular tail, of 10TM putative phosphate tra
  ------ inclusion threshold ------
      0.069   13.1   1.6       0.69    9.9   0.3    2.6  2  ApoB100_C  Apolipoprotein B100 C terminal


Domain annotation for each model (and alignments):
>> RSN1_7TM  Calcium-dependent channel, 7TM region, putative phosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.1  33.9   7.4e-82   2.7e-78       2     274 .]     659     933 ..     658     933 .. 0.98

  Alignments for each domain:
  == domain 1  score: 263.1 bits;  conditional E-value: 7.4e-82
    RSN1_7TM   2 klivtlllvlliifwiipvafvgllsnletltkvlpflkkilelskkllsvvtgllPtlllslllallpiilrllsklqGalsrselelsvvskyfaFl 100
                 + +v+++++++ii+w+ipvaf+++ls+l +l++ +++l++il+l++ +lsv++g+lPt+ l+++++llpiilr+l +++G +s   +elsv++ yf+Fl
  KKY22998.1 659 TALVFVVVLFMIILWAIPVAFTSALSQLHYLADRYHQLAWILKLPSVILSVLQGVLPTAFLAVITFLLPIILRFLVRMSGQQSGMLVELSVQNYYFFFL 757
                 67899********************************************************************************************** PP

    RSN1_7TM 101 vvnvFlvftlagtalslleeiid..nptsipkllaeslpkasnFfityillqglagaaleLlqlvklilflikrkflsktprdlaerytkppsfdygte 197
                 +v++Flv++++++a+ +l+ ++d  + t+ p+llae++pkasn+f++y+llq+++++a++L+q+++li ++i   +l++t+r +++r+ k++++++gt 
  KKY22998.1 758 FVQLFLVVSISSAAFVFLSILTDasTITELPNLLAENIPKASNYFFSYMLLQAMSVSAGALVQIGNLIKWFILAPILDSTARSKFNRQIKLNEVKWGTF 856
                 *****************8777777799************************************************************************ PP

    RSN1_7TM 198 ypkvllifvialiYsviaPlilpfaliyfllgylvykyqllyvydtkyesgGklwpralnrllvglvlfqllliglf 274
                 +p+++++++i+liYsvi+Plil+f +i+f+l ++vy+y+ lyv++   ++gG l+p+a+n ++vg+++++++l +lf
  KKY22998.1 857 FPVYTNLAAIGLIYSVISPLILVFNVITFSLFWFVYRYNTLYVTKFTRDTGGLLFPNAINCTFVGVYVLEVVLSALF 933
                 *********************************************999************************99887 PP

>> RSN1_TM  Late exocytosis, associated with Golgi transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.4   0.8   1.8e-47   6.6e-44       2     156 .]      25     186 ..      24     186 .. 0.94
   2 ?   -0.1   0.1      0.19   6.9e+02      81     108 ..     656     682 ..     653     698 .. 0.66
   3 ?   -0.1   0.5       0.2   7.1e+02      81     142 ..     754     809 ..     749     823 .. 0.62
   4 ?   -0.7   0.2       0.3   1.1e+03      76     126 ..     805     854 ..     804     894 .. 0.58

  Alignments for each domain:
  == domain 1  score: 149.4 bits;  conditional E-value: 1.8e-47
     RSN1_TM   2 lltslvinlvlalvflllFlilRkknkrvYaprtylkgeeertpplpqkglfgWipallkisdeeilekaGLDayvflrflkmlikiflvlavlalivL 100
                 + +slvi++v+++v + +Fli++ ++ r+Y+prtyl +e+ert++++  g+++Wi+++l++s++e ++k+GLDay+flr+l++l+kif+++a+++l++L
  KKY22998.1  25 FAASLVISIVIFGVEVGVFLIIKDRFTRIYQPRTYLVPEKERTKAAD-AGWWKWIKPVLSTSNSEFIQKCGLDAYFFLRYLRTLLKIFVPAACVILPIL 122
                 889**********************************9999999777.*************************************************** PP

     RSN1_TM 101 lPvnatggegedskesk.......sgldklsisnvs.egsnrlwahvvvayiftglvlyllyre 156
                 lP+n  +g+g++    k       +gld+l+++nv+ ++++r+wah ++a + +++v+y+ ++e
  KKY22998.1 123 LPLNNVDGRGSSFAVGKyanstnvTGLDQLAWGNVApTHTHRYWAHWLCALALILYVCYVAFDE 186
                 ****777777777666677777779***********99999*******************9875 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.19
     RSN1_TM  81 flkmlikiflvlavlalivLlPvnatgg 108
                 ++++++ +f+v+++++++  +Pv +t+ 
  KKY22998.1 656 YVRTAL-VFVVVLFMIILWAIPVAFTSA 682
                 555553.455555566667788887765 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.2
     RSN1_TM  81 flkmlikiflvlavlalivL.lPvnatggegedskesksgldklsisnvsegsnrlwahvvva 142
                 f+ +++++flv+++ + + + l +  + ++        ++l +l  +n+++ sn+++ ++++ 
  KKY22998.1 754 FFFLFVQLFLVVSISSAAFVfLSILTDASTI-------TELPNLLAENIPKASNYFFSYMLLQ 809
                 4444555555555444332202232222222.......4788999999999999999988764 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.3
     RSN1_TM  76 yvflrflkmli.kiflvlavlalivLlPvnatggegedskesksgldklsis 126
                 y++l+ + +++  ++ ++ ++ +++L P+  +  +++ +++   +l++++++
  KKY22998.1 805 YMLLQAMSVSAgALVQIGNLIKWFILAPILDSTARSKFNRQ--IKLNEVKWG 854
                 66666666664145557788999999999876666553333..245555544 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.6   1.9e-12   6.9e-09       2      97 ..     210     306 ..     209     335 .. 0.77
   2 !   59.5   0.0   1.4e-19   4.9e-16      59     176 .]     538     647 ..     496     647 .. 0.77

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.9e-12
    PHM7_cyt   2 rTvlvtgiPkelrseeklkeffeelypgkvvesvqivrdvkkldklveerekavrkleaalskykkngkklpkkrpthklgflglkl...igkkvdaid 97 
                  Tvlv++iP+++++ e+l+ + + ++pg   ++++++r++++l   ++ r+k++  le+++++++k+ ++++ k+  +  ++ g k+    +k+ dai+
  KKY22998.1 210 TTVLVSSIPHKWCNVEALEGLYD-VFPGGL-RNIWVNRNFDDLSAKIKVRDKLASTLEKVETNLIKKCREEHEKELAKEAKKAGKKItkeEKKEQDAIQ 306
                 6****************999885.799996.***********************************998765444333333333222100123345544 PP

  == domain 2  score: 59.5 bits;  conditional E-value: 1.4e-19
    PHM7_cyt  59 eaalskykkngkklpkkrpthklgfl.glkligkkvdaidyyrekleeldeeieeerekvkkkp.lgaaFvtfesersaaavakqakcaaqiqqssnpt 155
                 +a + ky+k+ +++  + p   l+++  l l+g+kvd+i ++r++l +l++eie+ +++ +  p +++aF++f+ +  aa++a    c  q  +++ p+
  KKY22998.1 538 DATWRKYIKETDRETMRLPIFGLSWMpALPLMGPKVDTIYHCRKELARLNAEIEDDQAHPERFPlMNSAFIQFNHQ-VAAHMA----C--QSLSHHLPK 629
                 45666777766544333344444444445689**************************86555559********76.666664....5..566778888 PP

    PHM7_cyt 156 l.kpkkwtvelAPePrDviWeN 176
                 + +p+ +++     P+DviW+N
  KKY22998.1 630 QmAPRLVEIA----PNDVIWDN 647
                 7788888886....*******9 PP

>> PHM7_ext  Extracellular tail, of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   4.8e-16   1.7e-12      25      93 .]    1201    1272 ..    1179    1272 .. 0.84

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 4.8e-16
    PHM7_ext   25 eeeyeeelekkaYlhPavtskepllWiprDpagvSkqeieetekvi...gisdegaeldekgkvewteaPpd 93  
                  +++ ++ l+++a+ h a+++k+p++WiprD++gvS++ei++++       +s+    ld+kg+ ++++aPpd
  KKY22998.1 1201 TADQRDALVQRAFQHAALRAKRPVIWIPRDDLGVSDDEIQNMSVFSdylWVSNVRQGLDAKGRCVYSGAPPD 1272
                  567788999*******************************87765532256********************7 PP

>> ApoB100_C  Apolipoprotein B100 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.12   4.2e+02      37      49 ..      99     111 ..      96     116 .. 0.84
   2 ?    9.9   0.3   0.00019      0.69      24      44 ..     741     761 ..     739     765 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.12
   ApoB100_C  37 afLkYiteLLkkL 49 
                  fL+Y+  LLk +
  KKY22998.1  99 FFLRYLRTLLKIF 111
                 6*********976 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00019
   ApoB100_C  24 skrLiDLsIekYhafLkYite 44 
                 s +L+ Ls+++Y+ f+ +++ 
  KKY22998.1 741 SGMLVELSVQNYYFFFLFVQL 761
                 789*************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1997  (0.111384); expected 358.6 (0.02)
Passed bias filter:                      705  (0.0393218); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.46
# Mc/sec: 8365.01
//
Query:       KKY22999.1  [L=110]
Description: putative transcription initiation factor iia small chain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-24   85.4   0.8    3.4e-24   84.7   0.8    1.3  1  TFIIA_gamma_C  Transcription initiation factor IIA, gamma sub
      6e-22   77.4   0.0      8e-22   77.0   0.0    1.2  1  TFIIA_gamma_N  Transcription initiation factor IIA, gamma sub


Domain annotation for each model (and alignments):
>> TFIIA_gamma_C  Transcription initiation factor IIA, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.8   3.8e-28   3.4e-24       1      45 []      60     104 ..      60     104 .. 0.99

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 3.8e-28
  TFIIA_gamma_C   1 tfKgkLdtYrfcDdVWtFiiknvefklendetvkvdkvKIVACns 45 
                    +fKg+LdtYrfcDdVWtF+ik+v+fkl+++++++++++KIV+Cns
     KKY22999.1  60 NFKGHLDTYRFCDDVWTFLIKDVNFKLDGGQSFTAERIKIVSCNS 104
                    8*******************************************8 PP

>> TFIIA_gamma_N  Transcription initiation factor IIA, gamma subunit, helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.0     9e-26     8e-22       1      47 [.       5      51 ..       5      52 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 9e-26
  TFIIA_gamma_N  1 yYelYRrstlGtaLtdaLDeliqegkIspqlamkVLeqFDksineaL 47
                   yYelYR+s++G aL d++D+li+eg I+pqlamkV ++FD+ i+e+L
     KKY22999.1  5 YYELYRGSSIGAALIDTVDDLINEGAIEPQLAMKVVSHFDRIIAEVL 51
                   8********************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.30s 00:00:00.71 Elapsed: 00:00:00.46
# Mc/sec: 725.88
//
Query:       KKY23000.1  [L=753]
Description: putative molybdenum cofactor biosynthesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-46  156.2   0.1    5.4e-24   84.5   0.1    2.5  2  MoCF_biosynth  Probable molybdopterin binding domain
    6.7e-36  123.4   0.5    1.2e-35  122.6   0.5    1.4  1  MoeA_N         MoeA N-terminal region (domain I and II)
    2.2e-14   53.3   0.0    5.3e-14   52.1   0.0    1.7  1  MoeA_C         MoeA C-terminal region (domain IV)
  ------ inclusion threshold ------
        3.9    6.8  14.6        6.1    6.2  14.6    1.2  1  SelP_N         Selenoprotein P, N terminal region


Domain annotation for each model (and alignments):
>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.1   1.2e-27   5.4e-24       1     144 []      11     168 ..      11     168 .. 0.91
   2 !   69.2   0.0   6.2e-23   2.8e-19       1     143 [.     461     623 ..     461     624 .. 0.87

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 1.2e-27
                    EEEEE-HHHHTTSSGBHHHHHHHHHHHT.TSEEEEEEEEE-SSHHHHHHHH..........HHHHHTS..........SEEEEESS-SSSTT--HH CS
  MoCF_biosynth   1 avitvGdellsgkieDtngpllaellke.lgvevskytvvpDdeeeikeal..........laaleea..........dviittGGtGptpdDvtp 75 
                    a+++v+d++++   +D+  p+l++ +++   ++  ++++v Dd e+i+e +                           ++++t+GGtG++++D+tp
     KKY23000.1  11 AILIVSDTVAKDPKTDRCIPILKDVFAQdGKWQEPAVEIVTDDLEKIQEIVtgwtdidtesT-----DstdasapsfvNLVVTSGGTGFAKRDFTP 101
                    79************************97356799*******************888776542.....02344578899****************** PP

                    HHHHHHHSEE-HHHHHHHHHHHHHHCCTTSHGGGGGGE.EE....TTE.EEEE-SSHHHHHHHHHHHHHGGHHH CS
  MoCF_biosynth  76 ealaklfekelegfeeafrrvslkpgkpvgvapgailsrav....gkt.iigLPGspkavkealeeillpaleh 144
                    ea+ +l++++++g+  a+ + sl+      v+p+a++ r v    +kt +i+LPGspk++ke le +l + l+h
     KKY23000.1 102 EAITPLIHRQAPGLVHAMLAASLE------VTPFAMMARPVagvrNKTlVITLPGSPKGAKENLEAML-KLLPH 168
                    ************************......*********99***9999899****************9.88876 PP

  == domain 2  score: 69.2 bits;  conditional E-value: 6.2e-23
                    EEEEE-HHHH..........TTSSGBHHHHHHHHHHHT..TSEEEEEEEEE-SSHHHHHHHH.HHHHHTS...SEEEEESS-SSSTT--HHHHHHH CS
  MoCF_biosynth   1 avitvGdell..........sgkieDtngpllaellke..lgvevskytvvpDdeeeikeal.laaleea...dviittGGtGptpdDvtpealak 80 
                    +++++Gde++           g+i+D+n p l++l+++  l  +v+++++ +D +  + e++ +++++ +   d+i+ttGG+++++ D+ + ++++
     KKY23000.1 461 GILSTGDEVVdlttsptalqGGQIRDSNRPSLISLISSwnLCSRVIDLGIARDTPPGTLETVlRTSFRLHaplDIIVTTGGVSMGELDLLKPTIER 556
                    69***********************************644888*******************75555555789*********************99 PP

                    HHSEE-HHHHHHHHHHHHHHCCTTSHGGGGGGE.EE.........TTEEEEE-SSHHHHHHHHHHHHHGGHH CS
  MoCF_biosynth  81 lfekelegfeeafrrvslkpgkpvgvapgailsrav.........gktiigLPGspkavkealeeillpale 143
                    +++       ++f rv++kpgkp+++a     + +          +k ++gLPG+p ++ +++ ++llpal+
     KKY23000.1 557 ALGG-----TIHFGRVAMKPGKPTTFASWDGFKPSSadnqdsesqRKLFFGLPGNPASALVTACLFLLPALQ 623
                    9996.....69***********9999876333322266999998555599************9999999997 PP

>> MoeA_N  MoeA N-terminal region (domain I and II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   0.5   2.7e-39   1.2e-35       1     157 []     265     448 ..     265     448 .. 0.82

  Alignments for each domain:
  == domain 1  score: 122.6 bits;  conditional E-value: 2.7e-39
                 B-HHHHHHHHHHH-HH-EEE.EEG.GCG-TT-BBSS-EE-SS-BSSS-EESSSEEEE.....EEBTTB--....................-S---TT-E CS
      MoeA_N   1 lsveealaiilaaleleeee.vpl.aaealgrvlaedvvApedvPpfdnSamDGYAv.....raeagsgaseeep.........saageeperllpgga 83 
                 lsv+ea+++i a+ +++ ++ +p  + ++++ ++ e ++A+e+vP++++S++DGYA+     +      +s ++          ++a++ p++l+pg++
  KKY23000.1 265 LSVDEAVEQIIAHSPPPVPTtLPYnSPDLINSTVSESIYAKEAVPAYRASIVDGYAIivdpsN------TSATKGtfpvasvshAQASSMPPPLQPGTI 357
                 59************66555559999999****************************9443332......22222235577799677777777777777* PP

                 EEE-TTSB--TT--EEEEGGGE..E................EETTE.....S--STTTTEE-TTSSB-TTSEEE-TTBB--CC..CHHHHHHCT CS
      MoeA_N  84 vrimTGaplPegadaVvpvEdte.eee............aketvev.....kavkpgenvrraGedikaGevllragtrltpa..eigllasvG 157
                 +ri+TGaplP++a+aVv+vEdt  + +            +++   +     +a+kpgen+r+ G+di+  +++l+a t +tp+  eiglla+ G
  KKY23000.1 358 ARITTGAPLPANANAVVMVEDTVlKSSrsttlptgittlEEK---EveiltSAIKPGENIREPGSDISLSSLILPASTLITPVggEIGLLAASG 448
                 *********************977333567888877765222...134578*******************************999******987 PP

>> MoeA_C  MoeA C-terminal region (domain IV)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   1.2e-17   5.3e-14       2      71 ..     671     741 ..     670     742 .. 0.95

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 1.2e-17
                 EEESS-EE--SSS-EEEEEEEE..S-S-EEEEEE-S---TT-GGGCTT--EEEEE-TT--EE-TT-EEEEEE CS
      MoeA_C   2 arlaedlksdpgrreflRvilt..eedgeyvaeptgkqgSglLsslaeAnglivipegtegleaGeeVevil 71 
                 a+l+++++sdp+r+e++Rvi++  + ++ + +++tg+q S+ + sla+Angl+++ +g++  + G++ ev+l
  KKY23000.1 671 ATLTHAIPSDPKRTEYHRVIISavQSSPSLQITSTGSQRSSKIGSLARANGLLIVHPGRD-MKNGDVGEVLL 741
                 789*******************99999********************************8.99999988876 PP

>> SelP_N  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  14.6    0.0014       6.1     177     217 ..     205     241 ..     180     258 .. 0.44

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0014
      SelP_N 177 eaeektehehahshkqghkhhekhghhHkekeelsesqqee 217
                       + +h+h+h + h+hh++h++ H++++  + +++++
  KKY23000.1 205 AM----SSNHTHTHDHRHHHHHHHDRGHGGHQVPRPHTDPS 241
                 22....22222333233333333333333322222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 5240.26
//
Query:       KKY23001.1  [L=1044]
Description: putative ddhd domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-23   84.6   0.0    5.2e-16   59.5   0.0    4.3  3  DDHD         DDHD domain
  ------ inclusion threshold ------
      0.038   15.1   3.7       0.18   12.9   3.7    2.2  1  RBM39linker  linker between RRM2 and RRM3 domains in RBM39 pr
        1.5    6.7   4.6        2.2    6.1   4.6    1.1  1  FSIP2        Fibrous sheath-interacting protein 2


Domain annotation for each model (and alignments):
>> DDHD  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -13.6  20.2         3   1.8e+04      89     165 ..     125     204 ..      95     382 .. 0.66
   2 !   59.5   0.0   8.8e-20   5.2e-16       1      82 [.     819     915 ..     819     938 .. 0.84
   3 !   32.3   0.0   1.8e-11   1.1e-07     176     222 ..     969    1017 ..     929    1018 .. 0.83

  Alignments for each domain:
  == domain 1  score: -13.6 bits;  conditional E-value: 3
        DDHD  89 elkesltsigaalkqkvsglvssls..a...llnrslelaeeesaslaessksherasesskasqeskaaesstasssakss 165
                   ke+++++  ++ +  +gl +sl+  +   l+++   l++e+++++ae++++++++++s+ +  +  ++e ++++s++++s
  KKY23001.1 125 ITKETTQNLLVDSDDDDTGLSDSLKeaSrdaLMRKE--LKQERKSAKAEAKAEKTSQKASKVDALQALREEVEATTSDTTTS 204
                 456666667777777777777777643133233333..33333333333333333333333333222222222222222222 PP

  == domain 2  score: 59.5 bits;  conditional E-value: 8.8e-20
        DDHD   1 ldFevedfFllGSPlGlflalrglera..............ktvkpald..vaqlkrpacqqlyNiFhpaDPvAyRlEPLlepkf.sklkPvsiprykr 82 
                 ++F+++++F+ GSP G+fl+l++++ +              +   + +     ++ +pa++++yN+ h +DP+Ay +++ ++ ++ + lkP +ip++  
  KKY23001.1 819 FEFNTSSLFCCGSPAGFFLLLHRANLLprkgrnkpgfegedE--GRGVAgaAGTYGCPAVDNIYNVMHYNDPIAYHMNAAVDVEYaHMLKPGNIPSASS 915
                 89********************88855778889988887542..2222256999*******************************9999******9876 PP

  == domain 3  score: 32.3 bits;  conditional E-value: 1.8e-11
        DDHD  176 vralnwwgRiDYaLq..egaleaeylsavasHasYWeseDvalFllrql 222 
                  +  ln++g+iDY L    g+le++yl+++++H sYW  +D++ F++ ++
  KKY23001.1  969 MHLLNDNGQIDYFLSsgGGPLEIQYLNMLSAHSSYWVLQDFVRFIVMEI 1017
                  6789***********77788*************************9875 PP

>> RBM39linker  linker between RRM2 and RRM3 domains in RBM39 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   3.7   2.9e-05      0.18       2      66 ..     138     204 ..     137     227 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.9e-05
  RBM39linker   2 DdddrgGv..nLnatsRaaLMak.Larsgtalsipaaaaaalqnsaaaaeaat.aveaaapa......eaklasv 66 
                  Dddd +G+  +L+  sR+aLM+k L+++ ++++ +a+a+  ++ ++a +  a  a  ++++a      +     +
   KKY23001.1 138 DDDD-TGLsdSLKEASRDALMRKeLKQERKSAKAEAKAE--KTSQKASKVDALqALREEVEAttsdttT-----S 204
                  6666.888445***********95666444333333332..2222222333322333333332222211.....2 PP

>> FSIP2  Fibrous sheath-interacting protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   4.6   0.00036       2.2     754     838 ..     128     212 ..     119     241 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00036
       FSIP2 754 eskieeeltsdedevvlkevvkeelleelledqvkeekkpveskvaspkstlstsslkkflslskccqptssaniesieassnqi 838
                 e++ +  + sd+d+  l + +ke   + l+ +++k+e+k++++++   k+++ +s +  + +l + +++t+s +++s  + ++q 
  KKY23001.1 128 ETTQNLLVDSDDDDTGLSDSLKEASRDALMRKELKQERKSAKAEAKAEKTSQKASKVDALQALREEVEATTSDTTTSKFQAPSQP 212
                 3333334579*******************************************************99999988887765555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1044 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1448  (0.080763); expected 358.6 (0.02)
Passed bias filter:                      722  (0.04027); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:00.54
# Mc/sec: 5798.29
//
Query:       KKY23002.1  [L=178]
Description: hypothetical protein UCRPC4_g03007 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       900  (0.050198); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1235.93
//
Query:       KKY23003.1  [L=187]
Description: putative carbohydrate-binding module family 1 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-42  144.8   0.8    4.4e-42  144.5   0.8    1.0  1  GH131_N   Glycoside hydrolase 131 catalytic N-terminal domain


Domain annotation for each model (and alignments):
>> GH131_N  Glycoside hydrolase 131 catalytic N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.5   0.8   2.5e-46   4.4e-42       1     170 [.      19     176 ..      19     178 .. 0.98

  Alignments for each domain:
  == domain 1  score: 144.5 bits;  conditional E-value: 2.5e-46
     GH131_N   1 vlfDGRvpanataadfdkls.tsqvkpyltvvkgsesaseyltlskeakspadksktkvlkvkiddkSiFvpgenaqtgfrRaellpqkdelndaieeG 98 
                 vl+DGR+++  ++a++ ++s ++qv+py+++++g+  +++y++l++++k+pad+s t+++k++id++S +    n+q  +rR+el+pq+d   +ai++G
  KKY23003.1  19 VLWDGRFNDISSSAELAEWSwSNQVGPYQYYIHGNGYVTDYVNLDSSYKNPADSSSTQGVKITIDNTSYW----NGQ-DMRRTELIPQTD---AAINKG 109
                 89******************99************************************************....999.************...9***** PP

     GH131_N  99 vttfhfSvkkdearplnltheyqivflEsaysshvfdlkvgtpfgsdtaradtlkvldaalktlfstpfekg 170
                 ++++hfS+++  ++p+ ++ e+qi+f+E    sh+++lk+g ++g++++++ tl++ + ++ t ++t+fe +
  KKY23003.1 110 KVYYHFSISHLSTNPPGTHEEHQIAFFE----SHFTELKYGLLSGESGTSDSTLRW-QVSSVTQWNTTFEAE 176
                 ****************************....9***********************.9999999***99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1484.65
//
Query:       KKY23004.1  [L=236]
Description: putative 60s ribosomal protein l19 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-62  207.5   8.5    8.6e-62  207.5   8.5    1.9  2  Ribosomal_L19e  Ribosomal protein L19e
  ------ inclusion threshold ------
       0.15   11.6   4.9       0.24   10.9   4.9    1.4  1  TRAP-gamma      Translocon-associated protein, gamma subunit 
       0.22   11.2   1.3       0.36   10.5   1.3    1.4  1  DUF4239         Protein of unknown function (DUF4239)


Domain annotation for each model (and alignments):
>> Ribosomal_L19e  Ribosomal protein L19e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.5   8.5   1.4e-65   8.6e-62       1     144 []      46     189 ..      46     189 .. 0.99
   2 ?   -2.2   2.8      0.64   3.8e+03      73      91 ..     200     218 ..     187     234 .. 0.43

  Alignments for each domain:
  == domain 1  score: 207.5 bits;  conditional E-value: 1.4e-65
                     -THHHHHHHHHHTTS-GGGEEE-GGGHHHHHH--SHHHHHHHHHTTSEEE-------THHHHHHHHHHHTT-S-SGGG--S-HHHHS-HHHHHHH CS
  Ribosomal_L19e   1 dlklqkrlaasvlkvGknrvwldpeeleeiaeAitredirklikdglIikkpkkgnsrararerkekkrkgrrrgsGkrkGtkeaRlpekelWik 95 
                     +l++qkrlaasv+++Gk+++wldp+e++ei++A++r++irkl++dglIi+kp++++sr+rare+++++r gr+rg+GkrkGtk+aR+p+++lW++
      KKY23004.1  46 NLRTQKRLAASVVGCGKRKIWLDPNEVNEISNANSRQTIRKLVSDGLIIRKPVTMHSRSRARELNAARRIGRHRGYGKRKGTKDARMPSQVLWMR 140
                     689******************************************************************************************** PP

                     HHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHTT--SSHHHHHHHHT-XX CS
  Ribosomal_L19e  96 riRalRrlLkelrekkkidkktYrelYrkakGgefknkavLkeyiekkk 144
                     r+R+lRrlL ++r+++kidk+ Y+elY+ +kG++fk+k++L e+i+k+k
      KKY23004.1 141 RQRVLRRLLVKYRASGKIDKHLYHELYHLSKGNTFKHKRALVEHIHKAK 189
                     **********************************************975 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.64
                     S-SGGG--S-HHHHS-HHH CS
  Ribosomal_L19e  73 rrgsGkrkGtkeaRlpeke 91 
                     ++   kr  tk aR  ++e
      KKY23004.1 200 EEMDAKRAKTKAARERRQE 218
                     2222333333444433332 PP

>> TRAP-gamma  Translocon-associated protein, gamma subunit (TRAP-gamma)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   4.9     4e-05      0.24      69     119 ..     182     231 ..     148     235 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4e-05
  TRAP-gamma  69 vkfvlkhkiavkReeavtrevnkkladdkKiskkekderilwkknevadyE 119
                 v ++ k k   +Re+ +++e+ +k   ++K +++ ++eri +k+n +a+ E
  KKY23004.1 182 VEHIHKAKAEAQREKNLKEEMDAKR-AKTKAARERRQERINTKRNALAAEE 231
                 568899999************9887.7889999**************9887 PP

>> DUF4239  Protein of unknown function (DUF4239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.3   5.9e-05      0.36      89     139 ..     175     228 ..     135     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.9e-05
     DUF4239  89 sseltkLldllaevkgdassesaaveell...seiaqltelRakRisdeavalp 139
                  ++  +L++ +++ k +a+ e++++ee++   +++ +++e R++Ri  +  al+
  KKY23004.1 175 FKHKRALVEHIHKAKAEAQREKNLKEEMDakrAKTKAARERRQERINTKRNALA 228
                 5677899********************9988899999**********9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2054  (0.114563); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 1580.45
//
Query:       KKY23005.1  [L=516]
Description: putative cytosolic [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.4e-199  660.2   0.0   9.9e-199  659.9   0.0    1.0  1  SHMT      Serine hydroxymethyltransferase


Domain annotation for each model (and alignments):
>> SHMT  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  659.9   0.0  5.5e-203  9.9e-199       1     399 []      51     455 ..      51     455 .. 0.98

  Alignments for each domain:
  == domain 1  score: 659.9 bits;  conditional E-value: 5.5e-203
                 HHHHTHHHHHHHHHHHHHHHHSEE-STT-----HHHHHHHTSGGGG----EETTEESSST-HHHHHHHHHHHHHHHHHCT-STTTEEEE---SSHHHHH CS
        SHMT   1 leesdpevaeiikkekerqkeeieliasenftskavlealGsvltnkyaeGyPGkryyGGcefvdeveelaqdrakelfkldpakwgvnvqplsGsqan 99 
                 lee+dp v+ei++kek+rq++ i+li+senfts+avl++lGsv++nky+eGyPG+ryyGG+ef+de+e+l+q+ra+e f+ldpakwgvnvqplsGs+an
  KKY23005.1  51 LEEADPAVFEIVQKEKKRQQHFINLIPSENFTSQAVLDTLGSVMQNKYSEGYPGARYYGGNEFIDEAERLCQQRALETFRLDPAKWGVNVQPLSGSPAN 149
                 6899*********************************************************************************************** PP

                 HHHHHHHT-TT-EEEEESCTTTSTGGGT-BTSS-B-SHHHHHSEEEEE-B-TTTSSB-HHHHHHHHHHH--SEEEEE-SST-S---HHHHHHHHHHTT- CS
        SHMT 100 lavytallepgdrilgldladGGhlthGakveskkisassklfesveykvdketglidydelekkakefkPklivaGtsaysrlidyarlreiadevga 198
                 l+ y+a+ +++dri+gldl++GGhl+hG+++ +kkis++sk+fe+++y++d++tglidy ++++ a +++Pk+++aGtsaysrlidy+++r ++devga
  KKY23005.1 150 LYAYSAVCNTHDRIMGLDLPHGGHLSHGYQIPNKKISMISKYFETLPYRLDESTGLIDYVKMRELALLYRPKILIAGTSAYSRLIDYEKMRAVSDEVGA 248
                 *************************************************************************************************** PP

                 EEEEE-GGGHHHHHTTSS--GCCTSSEEEEESSSTT-S-S-EEEEEC-SEEEEETTTEEEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHCTSHH CS
        SHMT 199 yllvdmahiaGlvaagvipsPfeyadvvtttthktlrGprgglillrkgvksvdktgkevleelekkinsavfPglqGGPlnhviaakavalkealepe 297
                 yll+dmahi+Glvaagv psPfey+d+vtttthk+lrGprg++i++rkgv+ vdk+g+e +++le  in++vfPg+qGGP+nh+i+a+avalk+a +pe
  KKY23005.1 249 YLLSDMAHISGLVAAGVLPSPFEYSDIVTTTTHKSLRGPRGAMIFFRKGVRRVDKKGNEEMYDLEGPINMSVFPGHQGGPHNHTITALAVALKQAQTPE 347
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHT......T-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTSSTTTT-SEEEEESHHHHHTT--HH CS
        SHMT 298 fkvyqkqvlknakalaealkek......gyklvsgGtdnhlvlvdlrekgldGkraekvlekvnitankntvPgdksalvtsGlrlGtpaltsrgfkee 390
                 fk yq+qvl+nakal+e l ++       yk+vsgGtdnhlvlvdl+++++dG+r+e+vle + ++ankntvPgdksa+ ++Glr+Gtpa+tsrgf+++
  KKY23005.1 348 FKDYQRQVLSNAKALSERLGNSsttgglEYKVVSGGTDNHLVLVDLKNRDIDGARVERVLELCGVAANKNTVPGDKSAMRPGGLRMGTPAMTSRGFRTS 446
                 ******************98753333336********************************************************************** PP

                 HHHHHHHHH CS
        SHMT 391 dlekvakfi 399
                 d+e+va+++
  KKY23005.1 447 DFERVADIV 455
                 *****9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.48
# Mc/sec: 3229.75
//
Query:       KKY23006.1  [L=442]
Description: hypothetical protein UCRPC4_g03011 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 2739.70
//
Query:       KKY23007.1  [L=677]
Description: putative glycosyl hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-55  188.6   0.0    1.9e-48  165.4   0.0    2.1  2  Glyco_hydro_15  Glycosyl hydrolases family 15


Domain annotation for each model (and alignments):
>> Glyco_hydro_15  Glycosyl hydrolases family 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.4   0.0   1.1e-52   1.9e-48       8     351 ..     284     605 ..     277     612 .. 0.92
   2 !   21.5   0.0   4.8e-09   8.7e-05     401     447 ..     614     660 ..     607     661 .. 0.92

  Alignments for each domain:
  == domain 1  score: 165.4 bits;  conditional E-value: 1.1e-52
                     HHCBCSTTSSBTTS-TT-B-S-S-BSSS.........B--SEEHHHHHHHHHHHH.......HHHHHTTT-HCCHHHHHH....HHHHHHHHCTS CS
  Glyco_hydro_15   8 lrnvktlilleqnpvtGlliASpstsdp.........DYrytWvRDsvyvilavwglgyrdedrakayeleqslvklmrg....lleamvrqagk 89 
                      r++  l+ll+++p tG+++A+p+ s+p         DYry WvRD ++++ ++++lg+  e++a+++ + + +++   +     l +m +++g+
      KKY23007.1 284 ERSLLLLKLLTYQP-TGAIVAAPTFSLPeaiggtrnwDYRYSWVRDTSFTLYVFLRLGFVAEAEAYIEFIFRRIADWHDNhqgePLPLMFSIDGE 377
                     57788899******.********************************************************99998665522236899******9 PP

                     -BTTB-TTSCGGGG--EE-TTS-B--S-..-S--BTTHHHHHHHHHHHHHCTTHCHCCCCHHHHTHHHHHHHHHHHTTS-EE-TTS--ECEEHH. CS
  Glyco_hydro_15  90 vekfketqstkgLhakyftktgstvvGddewghlQlDatslyllalaqmtasglqiistldevafvqnlvdYieaayktpdfglWEenqgeseln 184
                       ++ e++++   h++++++t+++++G+ + gh+QlD++++ + a++ + + g+ i ++ +    ++ l+dY++  +k pd  +WE+++ ++++ 
      KKY23007.1 378 -SDLPERELS---HLEGYKNTKPVRIGNAATGHIQLDIYGELMDAIYLYNKHGKPIAYDQWLS--IRRLIDYVTTIWKDPDMSIWEVRGKKENFC 466
                     .777889999...**************************************************..****************************** PP

                     .HHHHHHHHHHHHHHHHHHCT-HHHHCC..HHHHHHHHHHHHHSTTT..GGGEETTCCECECSCH.....HHHTTS--S-BCHHHHHHHHCS-TT CS
  Glyco_hydro_15 185 assvgmakAlleaideadlfgakgdaql..vektkdeilnklqgkygckrgfwplfntylildgsfaedkeqvqeyrealdasllllpelyfvpa 277
                     +s+++ ++++++a++++d+  +    q   + + +dei++ +     +++gf  + nt+++ ++s            + +d++ll++p + f+ +
      KKY23007.1 467 YSKMMLWVSVDRALRLCDKRPNLPCPQRwdWLRVRDEIYESV-----MEHGFNRNLNTFVQSYES-----------FNTVDSALLIAPLVFFIAP 545
                     ******************9986554444267899********.....******************...........799**************** PP

                     S-TT-TT-TTTSHHHHHHHHHHHHHHHHHSGGGTT-STTS--SBTT--CGSSSBSCT--BHHHHHHHHHHHHHH CS
  Glyco_hydro_15 278 ddvdeeyqnpqsprllaqslyildsllsegflavgeldplvrRysedvkpdklglsGrpyylctlwtvetllde 351
                     +d          pr+l++++ il s ++ g+ ++g   +lv Ry +   +d++g+ ++++ +ct+w ve l ++
      KKY23007.1 546 ND----------PRFLGTLDRILLSPEKGGL-NSG---GLVFRYDHNAVDDGVGGVEGSFTMCTFWLVEALIRA 605
                     **..........*************999666.777...68**************************99888764 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 4.8e-09
                     HHHHHHHHHHHH.S-TTS---SEE-TTT--EESSTT-HHHHHHHHHHH CS
  Glyco_hydro_15 401 eladliveavee.dnslgvLteevdvylgeliraqpllfsealllrig 447
                     e a++i e+v   +n+lg+++ee++  +ge+++++p++fs++++++++
      KKY23007.1 614 EAAKTIFESVTSfSNHLGMYSEEISL-TGEQLGNTPQAFSHLAFISAA 660
                     6788999999999************9.9*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4748.34
//
Query:       KKY23008.1  [L=238]
Description: putative solute carrier family 35 member c2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-11   41.7   5.0      1e-10   41.5   5.0    1.0  1  TPT       Triose-phosphate Transporter family
    4.2e-05   23.7  14.6    6.4e-05   23.2  14.6    1.3  1  EamA      EamA-like transporter family
  ------ inclusion threshold ------
       0.28   11.4  10.2       0.17   12.1   0.9    2.5  2  CD47      CD47 transmembrane region


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   5.0   1.7e-14     1e-10     130     290 .]       3     166 ..       1     167 [. 0.84

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 1.7e-14
         TPT 130 gGvalasvtElsFnligfisAlisnltfslrnifsKkllkklkd.ldalnlfaiitilslllllPvallveg...vlktpsllkstkvslkevllllll 224
                 +Gv++  + E+ Fn igf+  ++s +++ +r  +   ll  +    +    +++i+ + ++ l+ +al+ eg   v + + +l ++  ++ + ++ll+ 
  KKY23008.1   3 VGVIMMVAGEAAFNAIGFSLIIASAFFSGFRWALTQILLLRHPAtSNPFATLFFIAPIEFVALFLLALAAEGpleVINGIGILIAK-EGTFQGICLLIF 100
                 79*********************************9999983333566777888888899999999999***54333333333333.445566678899 PP

         TPT 225 sgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGvflYs 290
                  g+l +      +++L+r++ vt s+    K vv I ++ +++++p++++n+ G  v+i+ +  Y+
  KKY23008.1 101 PGFLAFCMLSSEFALLQRTNVVTLSICGIFKEVVTISAAEIFYHDPLTPINISGLLVTIASIGAYN 166
                 9******************************************************99998766664 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2  14.6   1.1e-08   6.4e-05       2     132 ..      18     162 ..      17     167 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.1e-08
        EamA   2 lgillallaalfwaiyfvlskillrkv....spltltfvrfliagillliiallkegkl.......aklslkdwllllllgllgtvlaf...llffyal 86 
                 +g  l++++a+f+++ + l++ill ++    +p++++f+   i +++l+++al  eg+l         + +++ +  + l +++++laf   +  f +l
  KKY23008.1  18 IGFSLIIASAFFSGFRWALTQILLLRHpatsNPFATLFFIAPIEFVALFLLALAAEGPLevingigILIAKEGTFQGICLLIFPGFLAFcmlSSEFALL 116
                 68889******************77775666888888877778888999998888888855555554555555555566666777777722245699** PP

        EamA  87 kktsasnaslitslePvftlilsvlllgekltlkqllgivlillGv 132
                 ++t++ + s++  +  v+t+  + ++++ +lt + + g+++ ++++
  KKY23008.1 117 QRTNVVTLSICGIFKEVVTISAAEIFYHDPLTPINISGLLVTIASI 162
                 *******************************************998 PP

>> CD47  CD47 transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   2.8     0.012        74      46      77 ..       2      32 ..       1      88 [. 0.75
   2 ?   12.1   0.9   2.8e-05      0.17       8      80 ..      95     170 ..      90     184 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.012
        CD47 46 vvgaillipgeysvkkaiGlvLivlpaviliv 77
                 vg+i+++ ge ++ +aiG+ Li  +a+++ +
  KKY23008.1  2 TVGVIMMVAGEAAF-NAIGFSLIIASAFFSGF 32
                69999999999876.899********999755 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2.8e-05
        CD47   8 laiiLlwgqlgiitlkyks...vskklilllvagliitlivvvgaillipgeysvkkaiGlvLivlpavilivlqy 80 
                 + ++++ g l +  l+ ++   ++++++ l + g++  ++ + +a +++ + ++ ++++Gl+    +++    l++
  KKY23008.1  95 ICLLIFPGFLAFCMLSSEFallQRTNVVTLSICGIFKEVVTISAAEIFYHDPLTPINISGLLVTIASIGAYNYLKV 170
                 555555444444444444444889999**********************************999888887766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1567.34
//
Query:       KKY23009.1  [L=1028]
Description: putative dna polymerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     6e-205  682.7  19.7   1.2e-204  681.8  19.7    1.5  1  DNA_pol_phi  DNA polymerase phi
  ------ inclusion threshold ------
      0.056   12.9  21.6      0.093   12.1  21.6    1.3  1  SDA1         SDA1
       0.15   12.2   1.9        4.2    7.6   0.0    3.9  5  RTP1_C1      Required for nuclear transport of RNA pol II C-t
       0.81    9.0  26.6        1.8    7.8  26.6    1.5  1  BUD22        BUD22
       0.82   10.4   4.7         24    5.7   0.7    3.4  3  ACC_epsilon  Acyl-CoA carboxylase epsilon subunit


Domain annotation for each model (and alignments):
>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  681.8  19.7  3.3e-208  1.2e-204       2     767 .]      59     857 ..      58     857 .. 0.92

  Alignments for each domain:
  == domain 1  score: 681.8 bits;  conditional E-value: 3.3e-208
  DNA_pol_phi   2 alkRLirglasdresarlgfslaLtelLsqve.......eltlkeiLellkkklkpqgskkgkeerdalfGrLfGlqAllqsgllskeeatleelkev 92 
                  al+RLirgl+s+r++ar+gfs+aLte+Lsq++       ++++++ +e lk+++ p++s+++++erd++fGrLfG++A+l+s +l++++  + +l ++
   KKY23009.1  59 ALRRLIRGLCSNRKAARIGFSIALTEFLSQIFdftqaqrGFDASQAVEFLKSQTAPSESVSKQDERDHYFGRLFGAEAFLKSRILFTDS-ATPALITL 155
                  89**************************************************************************************9.6777889* PP

  DNA_pol_phi  93 lqlLielakkkewLresclwvlvdaveklpeeafeeeaakalleelskaklaktpeglallLalqekfpdlklpkllkklwksedpLskenlptLakv 190
                  l+l++ela+kk+w+r++c+wvl+ +++  ++    +++a+++l+ l+++kl+++peg+a++La+ +kfp++ lp     +wk+++pL+k++ + Lakv
   KKY23009.1 156 LDLICELANKKPWMRQECGWVLYGCIAGSSQIG--SDVAETILSALNSHKLIRSPEGVAIWLAVTQKFPKAMLPR---DVWKHDNPLHKKENALLAKV 248
                  **************************9876655..7*********************************999999...9******************* PP

  DNA_pol_phi 191 Lkes.....ee.eeekekksanwnpklhfvwdvildll....kkkkskeeskeasfeeFWqvvVdeslfsakssserkylgfqvfqkalpklsasqip 278
                  ++++     +e ++++++ sa+wn+ lhf+w+ +l +l    +k+ ++ +sk + fe+FW +vVd slf+++ssserk+ gf+v   a+++++++ + 
   KKY23009.1 249 MRDAtprgdDEsKGQEAQGSATWNATLHFAWPAVLRILyeniDKDGESTKSKLIPFEQFWAEVVDASLFASSSSSERKHTGFLVSIAAINNAPPAALR 346
                  *****99864435555555***********************9******************************************************* PP

  DNA_pol_phi 279 dlfsknlmrclinqlssedryLhkaaqkalkeiqevvkkdpekalavltaLlgk.ngslnfDkltktktvekllksldeeglkklvdllkslils.sn 374
                   l+ +n++r linq++s +r+Lh+aaq+++ +++++  ++pe  +++l+aLl++ +g  +fD++tktkt+ekl++s+++e+++++vd l++ +++ + 
   KKY23009.1 347 FLLRGNFLRALINQSASGERLLHRAAQRTVHALLTRSTESPEASATILRALLSStEGGATFDQVTKTKTLEKLVTSVKPETMEDVVDALTAFLQQpG- 443
                  ***************************************************66659***************************************32. PP

  DNA_pol_phi 375 eesdekeaesrrqwildqLlsivrskklkkeee...kewvqeilkflavlgffkakssieetekkpspalsestrelcrerlfslLselssqsgsekd 469
                   + d k+a  +r  ++d L++  +++  +  +e   ++   +ilk +a+l++f++  + ++++++ sp+l++str++++ rl+s+L+ + ++   +++
   KKY23009.1 444 -TLDDKQAHAKRVGAADLLVQAFSQTFAEGWTEeigEDSRAKILKAFATLSYFVPPGDLPAKKSSISPPLASSTRQILQARLSSCLERAMKS---KAS 537
                  .279******************99988866665787999999**************************************************...888 PP

  DNA_pol_phi 470 geswlykllellktlekskkvekliikldeelekawkkalkvlkklskkekkeekaakaqafelLlllvlLqlysgdeeavsvledLkicykkafskk 567
                  +      ++  l+   k+++ +k ++++de ++ a+  a+ vl++l+k++   +++  +qa +lL++l++Lq+y+gd++av++le+L+ ++  + +  
   KKY23009.1 538 AMASMDVVVGELRRSGKEPDEVKSAVEMDEGVRGALSTAWTVLTSLQKQKP--TTSPYLQAVKLLFSLSVLQVYNGDPDAVQILEELEGFIADSAE-- 631
                  8889999********************************************..5666**********************************99877.. PP

  DNA_pol_phi 568 kkkkkkeeepewvevlveiLLsllsqssallRklseqVfeafasevteegLellldvLearenkegqaelf....edededeeddeeeeeeddeeded 661
                        ++ +e+ ++++eiLLs+ sq+s++lR+++ qVf+ fa+++t++gL++l+++Lea+e+ +gq+elf     d +e+e+ ++++e+++ + d+d
   KKY23009.1 632 ------KSHSESADGIIEILLSFSSQPSKFLRRITIQVFQNFAPSITDSGLQSLTRILEADESVKGQQELFdaqpSDIEEEEDGSSDDEDDATSLDSD 723
                  ......46899************************************************************776656666666666667776666677 PP

  DNA_pol_phi 662 se...eddde.......................eesdedeededdedvdeidelreklaealgesg.....ededdddsdsDedmdDeqMmaLDeqLa 728
                  +e   +d                           e+d d++d++d+++de  ++++kla+al++ +     ++ +++ds sD+ m+D +M+aLD +L+
   KKY23009.1 724 VEmldSD--VeeisaqnetsdskssredgssssGEDDADDNDDEDGEDDELAAFDAKLAAALRTRKpqddlDAPESSDSASDSTMSDSEMEALDGALS 819
                  7764333..256999999999999*999986443333333344444444444***************99999999999999999************** PP

  DNA_pol_phi 729 eiFkerkkaknkkkkekkeakenvinFKiRVLDLleiyv 767
                  ++F +rk a  +kkke+k+a++n+i+FK+RVLDLle+y+
   KKY23009.1 820 SVFAARKAA-ASKKKENKDARSNIIQFKNRVLDLLEVYL 857
                  *********.****************************7 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1  21.6   2.6e-05     0.093      82     247 ..     689     840 ..     614     862 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.6e-05
        SDA1  82 eekkekreeeeedsddeddeedwevesdddseedseggwidvesdeeeieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeekekkkk 180
                  +++++            d + +++e+++d ++d+e++  + +sd e  + sd +e ++++e++++++ +++ ++ +  e++++++++e+ e++e +++
  KKY23009.1 689 VKGQQEL----------FDAQPSDIEEEEDGSSDDEDDATSLDSDVEMLD-SDVEEISAQNETSDSKSSREDGSSSSG-EDDADDNDDEDGEDDELAAF 775
                 2222222..........223333333333333444444455555544222.222222222222222222222222222.22222333333323333333 PP

        SDA1 181 .kakeaseeekkkekeeekiskaselattrILTpaDFaklkelraeaavkkqlesakrkkkkkkdeee 247
                  ++ +a+ +++k ++  ++ + +s  a++  ++++++++l+ +   ++v  + ++a++kkk++kd+++
  KKY23009.1 776 dAKLAAALRTRKPQDDLDAPE-SSDSASDSTMSDSEMEALDGAL--SSVFAARKAAASKKKENKDARS 840
                 223333444444444444444.3778999999********9999..5666666666666665555543 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.91   3.3e+03      73     104 ..      13      43 ..       9      55 .. 0.69
   2 ?   -1.0   0.0      0.53   1.9e+03      61      84 ..     413     443 ..     371     468 .. 0.58
   3 ?   -3.4   0.0         3   1.1e+04      57      68 ..     593     604 ..     583     607 .. 0.91
   4 ?    0.2   0.0      0.24   8.6e+02      12      44 ..     668     698 ..     616     708 .. 0.63
   5 ?    7.6   0.0    0.0012       4.2      60      99 ..     948     987 ..     946     990 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.91
     RTP1_C1  73 eevlklLleeyeeenekeslderlkvGEaLlr 104
                 +e +  L+e y ++  +e+  +rl+++++Ll+
  KKY23009.1  13 DEATLSLVEVY-NNLADEDEITRLRAAQSLLE 43 
                 55566788888.44444455578888887765 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.53
     RTP1_C1  61 ikgLvaLadvfpeevlklLleey.......e 84 
                  k+L++L++ ++ e+++ ++++         
  KKY23009.1 413 TKTLEKLVTSVKPETMEDVVDALtaflqqpG 443
                 4555555555555555555555544444444 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3
     RTP1_C1  57 YLnaikgLvaLa 68 
                 YL+a+k+L +L 
  KKY23009.1 593 YLQAVKLLFSLS 604
                 9******99986 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.24
     RTP1_C1  12 llpvrahglvlLrkliekkskeavldiekilkl 44 
                  + +   gl++L++++e+ +  +v+ ++++++ 
  KKY23009.1 668 APSITDSGLQSLTRILEADE--SVKGQQELFDA 698
                 44455566666666666665..55555555555 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.0012
     RTP1_C1  60 aikgLvaLadvfpeevlklLleeyeeenekeslderlkvG 99 
                 +i ++  La+  pe+ +++L+e y+e  +k+ l++  k+G
  KKY23009.1 948 SILIIKVLASLSPEKNIPKLVEMYAELRKKQLLEKDRKIG 987
                 6778899************************999999998 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  26.6    0.0005       1.8     147     273 ..     698     837 ..     665     853 .. 0.42

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0005
       BUD22 147 ekkkkkkkkkkkkkkeeee...........eeesdkeeesedsed..........eekeeseddeeeeeededdedaeedeedeeaeerelaqydg.ll 223
                 ++ ++ +++++ ++++e++                         +          +++++s++++ +++++edd+d   d++de+ e++ela++d+ l 
  KKY23009.1 698 AQPSDIEEEEDGSSDDEDDatsldsdvemlD-------------SdveeisaqneTSDSKSSREDGSSSSGEDDAD---DNDDEDGEDDELAAFDAkL- 779
                 2222222222222222222222222222221.............02233322211122333333333333333333...45678889999999*9955. PP

       BUD22 224 a........sddededeyneetdeesseesdssdssesasesesessek..........kkkkkkkkk 273
                 a        +dd d+    e++d++s++  ++s+ +  + +                  ++kkk+ k+
  KKY23009.1 780 AaalrtrkpQDDLDAP---ESSDSASDSTMSDSEMEALDGA-------LssvfaarkaaASKKKENKD 837
                 4599999777777776...2222222222222222222111.......11222222211222222222 PP

>> ACC_epsilon  Acyl-CoA carboxylase epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.85     3e+03       2      15 ..     605     618 ..     604     618 .. 0.88
   2 ?    5.7   0.7    0.0066        24      11      41 ..     768     798 ..     766     810 .. 0.82
   3 ?    4.1   0.2     0.021        77      17      39 ..     817     839 ..     806     849 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.85
  ACC_epsilon   2 llrVvrGnPtdeEL 15 
                  +l+V  G+P+++++
   KKY23009.1 605 VLQVYNGDPDAVQI 618
                  79********9975 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0066
  ACC_epsilon  11 tdeELAALtaVLaaraaaaaaaaaepapags 41 
                  +d ELAA  a Laa+ ++++++++ +ap++s
   KKY23009.1 768 EDDELAAFDAKLAAALRTRKPQDDLDAPESS 798
                  589*****************99998888663 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.021
  ACC_epsilon  17 ALtaVLaaraaaaaaaaaepapa 39 
                  AL  V+aar aaa +  ++++++
   KKY23009.1 817 ALSSVFAARKAAASKKKENKDAR 839
                  77888888888888887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1028 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1199  (0.0668749); expected 358.6 (0.02)
Passed bias filter:                      702  (0.0391544); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.02u 0.38s 00:00:01.40 Elapsed: 00:00:00.51
# Mc/sec: 6018.89
//
Query:       KKY23010.1  [L=331]
Description: putative thiazole biosynthesis enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.8e-107  357.3   0.0   3.5e-107  357.0   0.0    1.1  1  Thi4           Thi4 family
    5.2e-07   29.6   1.3    6.2e-07   29.3   0.5    1.5  2  DAO            FAD dependent oxidoreductase
    2.8e-05   24.2   0.1    0.00011   22.3   0.2    2.0  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    5.4e-05   22.4   0.4    7.6e-05   21.9   0.4    1.2  1  Lycopene_cycl  Lycopene cyclase protein
    0.00098   18.4   0.0     0.0013   18.0   0.0    1.2  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      0.004   17.2   0.2     0.0092   16.0   0.1    1.6  2  NAD_binding_9  FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.015   14.6   0.0      0.021   14.1   0.0    1.2  1  FAD_binding_3  FAD binding domain
      0.015   14.4   2.6      0.015   14.4   0.6    2.0  3  FAD_binding_2  FAD binding domain
      0.047   12.4   0.4       0.07   11.8   0.4    1.2  1  HI0933_like    HI0933-like protein
      0.051   12.8   0.0      0.075   12.3   0.0    1.2  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
       0.17   11.2   0.0       0.22   10.8   0.0    1.2  1  FAD_oxidored   FAD dependent oxidoreductase
       0.23   10.6   0.0        0.3   10.2   0.0    1.1  1  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)


Domain annotation for each model (and alignments):
>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.0   0.0  2.3e-110  3.5e-107       2     235 .]      61     304 ..      60     304 .. 0.97

  Alignments for each domain:
  == domain 1  score: 357.0 bits;  conditional E-value: 2.3e-110
                 HHHHHHHHHHHHHHTEEEEEEE--SHHHHHHHHHHHHC.TTS-EEEEESSSS--TTTTTTSTTBSEEEEETTTHHHHHHTT---EEE...SSEEEESEH CS
        Thi4   2 raiveryfedllkyaesDvvivGaGssGLtaayylakk.pdlkvailersvspGGGawlGGqlfsaivvrkpakelLdelgikyede...gdyvvvkda 96 
                 ra+++ryf+dl++yaesDv+i+GaGs+GL++ay+la++ pdlk+ai+e+svspGGGawlGGqlfs +v+rkp++++L++lg++ye+     ++vvvk+a
  KKY23010.1  61 RAMTRRYFNDLDTYAESDVIIIGAGSCGLSTAYVLANArPDLKIAIIEASVSPGGGAWLGGQLFSSMVIRKPGDAFLRDLGVPYEEDpatPNFVVVKHA 159
                 9************************************99*********************************************986222689****** PP

                 HHHHHHHHHHHHTSTTEEEEESEEEEEEEEET......BTEEEEEEEEEHHHHTCTTTSS.-B-EEEEEEEEEE--GSSSTTTTHHHHHHHHCTTTS-- CS
        Thi4  97 alftstllskvlqlanvkllnavaveDlivre......gegvaGvvinwtlvelahdtqscvDPlvirakvvvdatGhdgeivavvvkkikleakiekv 189
                 alftst+lskvl+ +nvkl+na++veDli+r+       +++aGvv+nwtlv+++hd+ sc+DP v++a ++++++Ghdg+++a+ vk+++++  iek+
  KKY23010.1 160 ALFTSTILSKVLAFPNVKLFNATCVEDLITRPatngskTVRIAGVVTNWTLVNQHHDDTSCMDPGVLNAPLLISTAGHDGPFGAFSVKRLESMGAIEKL 258
                 ********************************999874499********************************************************** PP

                 ---ECB-HHHHHHHHHHHECEEETTEEE-THHHHHHHT-EB--SB- CS
        Thi4 190 kgeksldaekaedaivkktrevvpnlyvaGmevaevdganRmGpif 235
                 +g+++ld+++aedaivk+tre++p+l+v+Gme++e+dganRmGp+f
  KKY23010.1 259 GGMRGLDMNRAEDAIVKNTREIIPGLIVGGMELSELDGANRMGPTF 304
                 *********************************************9 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.5   4.2e-10   6.2e-07       1      46 [.      78     126 ..      78     142 .. 0.82
   2 ?   -3.3   0.0       3.3     5e+03     143     177 ..     156     194 ..     150     220 .. 0.62

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 4.2e-10
                 EEEEECTSHHHHHHHHHHH.HTT...EEEEESSSSTTSSGGGSSEEEEES CS
         DAO   1 dvviiGGGiiGlstAyeLa.rrg...VtllekgdiagsgaSgrnsgllhs 46 
                 dv+iiG+G  GlstAy La +r+   ++++e++  +g g  +  + l++s
  KKY23010.1  78 DVIIIGAGSCGLSTAYVLAnARPdlkIAIIEASVSPG-GGAWLGGQLFSS 126
                 9*****************9556689********9999.766666666655 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.3
                 E.EHHHHHHHHHHHHHHT.T-EEEESECEEEE.EEEE.T CS
         DAO 143 v.dpakltaalaraaeal.Gveilegtevtgl.eeed.g 177
                 v ++a +t  +++++ a   v++++ t v++l  ++  +
  KKY23010.1 156 VkHAALFTSTILSKVLAFpNVKLFNATCVEDLiTRPAtN 194
                 557788888888885555258888888888852333332 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.2   7.4e-08   0.00011       1      33 [.      81     115 ..      81     152 .. 0.91
   2 ?   -2.4   0.0         4     6e+03       6      20 ..     201     215 ..     201     222 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 7.4e-08
                    EE--SHHHHHHHHHHHCC..TEEEEEE-SSSSSSG CS
  NAD_binding_8   1 IvGaGlsGlvaAylLaka..gfdvlllekrdrlGG 33 
                    I+GaG  Gl++Ay La+a  ++++ ++e++ ++GG
     KKY23010.1  81 IIGAGSCGLSTAYVLANArpDLKIAIIEASVSPGG 115
                    9***************977899***********98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4
                    HHHHHHHHHHHCCTE CS
  NAD_binding_8   6 lsGlvaAylLakagf 20 
                    ++G v+ ++L ++++
     KKY23010.1 201 IAGVVTNWTLVNQHH 215
                    799999999998766 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.4   5.1e-08   7.6e-05       1      36 [.      78     113 ..      78     119 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 5.1e-08
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36 
                    Dv++iGaG  gls A  l++a+p+lk+ +ieas s+
     KKY23010.1  78 DVIIIGAGSCGLSTAYVLANARPDLKIAIIEASVSP 113
                    9*******************************9765 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   8.6e-07    0.0013       2      46 ..      78     129 ..      77     185 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 8.6e-07
                  SEEEE--SHHHHHHHHHHHH..HTS-EEEEE.....TTHCHHHCSHHHHCHH CS
                  xxxxxxxxxxxxxxxxxxxx..xxxxxxxxx.....xxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq..agakvtlve.....legtclnggcllskal 46 
                  dv++iG+G  Gl++a  la+    +k++++e      +g++l+g+ + s ++
   KKY23010.1  78 DVIIIGAGSCGLSTAYVLANarPDLKIAIIEasvspGGGAWLGGQLFSSMVI 129
                  8*******************555*******7666655556666555555555 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         4     6e+03      87     100 ..      55      68 ..       5      74 .. 0.46
   2 !   16.0   0.1   6.1e-06    0.0092       2      46 ..      81     122 ..      80     130 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4
  NAD_binding_9  87 pddfvpRalyGrYl 100
                    +++ v Ra+  rY+
     KKY23010.1  55 RESQVMRAMTRRYF 68 
                    23445556666665 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 6.1e-06
  NAD_binding_9   2 ivGaGprGlavlerLlarakkkspleitlfdp.sepgagrvwrtdq 46 
                    i+GaG  Gl+++  L++    + +l+i +++   +pg g++w   q
     KKY23010.1  81 IIGAGSCGLSTAYVLANA---RPDLKIAIIEAsVSPG-GGAWLGGQ 122
                    9************99998...6**********55779.***97665 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.4e-05     0.021       2      23 ..      77      98 ..      76     109 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.4e-05
                   EEEEEE--SHHHHHHHHHHHHT CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLsea 23
                    dV+I+GaG +Gl++a +L++a
     KKY23010.1 77 SDVIIIGAGSCGLSTAYVLANA 98
                   79*****************976 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.6     1e-05     0.015       1      33 [.      78     112 ..      78     127 .. 0.80
   2 ?   -2.9   0.0       1.8   2.6e+03     150     180 ..     169     207 ..     162     229 .. 0.70
   3 ?   -1.8   0.0      0.85   1.3e+03     370     413 ..     258     301 ..     251     304 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1e-05
                    SEEEE--SHHHHHHHHHHHH..TTT-EEEEESSSG CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaae..aGlkvavvekeqe 33 
                    Dvi+iG+G  GL+ A+ +a+    lk+a++e   +
     KKY23010.1  78 DVIIIGAGSCGLSTAYVLANarPDLKIAIIEASVS 112
                    9***************9998424569999998766 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.8
                    HHHTCT.EEEEESEEEEEEEECTT.......EEEEEEEE CS
  FAD_binding_2 150 sarkag.vdfqerteadeLivedg.......rvtGavve 180
                    ++++ + v++++ t +++Li++         r+ G+v +
     KKY23010.1 169 KVLAFPnVKLFNATCVEDLITRPAtngsktvRIAGVVTN 207
                    555556689999999999999744445777777777654 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.85
                    EEES-EEEBETTSBE.STTEEESSBTEEE-STCEESSSSTTS--T CS
  FAD_binding_2 370 hytmgGvetdengrv.ldadgqpipGLYAaGevaaggvhganrlg 413
                    ++ m G+  +    +  +++ ++ipGL   G  + + ++ganr+g
     KKY23010.1 258 LGGMRGLDMNRAEDAiVKNTREIIPGLIVGGMEL-SELDGANRMG 301
                    556777777765554459999999**98555555.9999999987 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.4   4.7e-05      0.07       2      36 ..      78     114 ..      77     121 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.7e-05
                  SEEEE--SHHHHHHHHHH..HHTT--EEEE-SSSSS- CS
  HI0933_like   2 dviviGgGaAGlmaAisa..akrgkrVlllekakklg 36 
                  dvi+iG+G  Gl +A  +  a+ + +++++e+  ++g
   KKY23010.1  78 DVIIIGAGSCGLSTAYVLanARPDLKIAIIEASVSPG 114
                  8**************99966778999****9988776 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     5e-05     0.075       1      28 [.      80     108 ..      62     113 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5e-05
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagl.edylilE 28 
                  iIiGaG +Gl++a+ l +a    ++ i+E
   KKY23010.1  80 IIIGAGSCGLSTAYVLANARPdLKIAIIE 108
                  89999999999999998875423567777 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.22       1     114 [.      78     188 ..      78     210 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
  FAD_oxidored   1 DvvVvGGgpaGvaAA..iaAaraGakvlLveergvlGGlltsglvatdignkaeeqvvtgiareflerlrqrggarlk.krskwn....tfepevak 90 
                   Dv+++G+g+ G+  A  +a ar + k +++e +   GG +  g+   +   +    v+++  + fl+ l     +  + +++++n     +   +  
    KKY23010.1  78 DVIIIGAGSCGLSTAyvLANARPDLKIAIIEASVSPGGGAWLGG--QLFSSM----VIRKPGDAFLRDLGV--PY--EeDPATPNfvvvKHAALFTS 164
                   9**************54578999********9887777655433..333333....566666666666643..22..11111111112245555555 PP

  FAD_oxidored  91 avleemlaeagvtvllntrlveve 114
                   ++l ++la ++v+++  t +++ +
    KKY23010.1 165 TILSKVLAFPNVKLFNATCVEDLI 188
                   566666666666666666665554 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0002       0.3       4      60 ..      78     140 ..      75     153 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0002
  K_oxygenase   4 DligiGiGpsnLsLailleevkkelkalflerqpe...faWhpgmllegaelqis...fLkDl 60 
                  D+i+iG+G   Ls a  l++++ +lk+  +e + +    aW  g l+ ++ +  +   fL+Dl
   KKY23010.1  78 DVIIIGAGSCGLSTAYVLANARPDLKIAIIEASVSpggGAWLGGQLFSSMVIRKPgdaFLRDL 140
                  9******************************87542236799888888887776444477776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 2078.44
//
Query:       KKY23011.1  [L=263]
Description: putative short chain dehydrogenase reductase family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-59  199.9   2.7      5e-59  199.7   2.7    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    9.2e-48  162.3   2.8    1.1e-47  162.0   2.8    1.1  1  adh_short        short chain dehydrogenase
    3.6e-17   62.9   2.6      5e-17   62.4   2.6    1.1  1  KR               KR domain
     0.0075   16.2   1.6      0.011   15.7   1.6    1.3  1  NAD_binding_10   NAD(P)H-binding
     0.0092   15.5   2.8      0.025   14.1   2.8    1.7  1  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.011   15.1   0.3      0.042   13.2   0.1    2.0  2  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas
      0.014   15.4   0.6      0.051   13.5   0.5    2.0  1  YAcAr            YspA, cpYpsA-related SLOG family
      0.022   14.2   0.4      0.036   13.5   0.4    1.3  1  PALP             Pyridoxal-phosphate dependent enzyme
      0.042   14.3   0.9      0.099   13.1   0.8    1.7  1  NAD_binding_7    Putative NAD(P)-binding
      0.042   13.2   0.0      0.074   12.4   0.0    1.3  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
      0.051   12.7   2.6       0.04   13.0   1.2    1.5  2  RmlD_sub_bind    RmlD substrate binding domain
      0.079   13.7   0.1       0.23   12.2   0.1    1.8  1  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.7   2.7   3.3e-62     5e-59       3     234 .]      28     261 ..      24     261 .. 0.94

  Alignments for each domain:
  == domain 1  score: 199.7 bits;  conditional E-value: 3.3e-62
                   TTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                    +gIG ++A+alae+Ga+v++t+   ++  +++++la+e + +v  +++DV++ e++++++++++++fg+lD++v nagi+ +  +++++++re+++
    KKY23011.1  28 SRGIGLEVARALAEAGADVAITYSTSKGaVETAARLASENDVKVqaYQADVRNFESITTTISQIAKDFGGLDVVVANAGISGH--KEAEDFTREQYK 122
                   59**************************99*********9988667*************************************..************ PP

                   HHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSB.STTTT.HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHH CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeg..gsivnlssvgaerv.vpnyn.aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdell 189
                   +++++n+ ++f++a+aa++++k++  g+++ ++s++++ v +p+ + +y+a+Ka +++l+++lAve+ +   RvN++spg+i T++  +++  +e +
    KKY23011.1 123 DIMSTNVDGVFHTAQAAAKIFKPQghGNLIITASISGSLVnLPQKQaVYNASKACVIHLAKSLAVEWVD-WCRVNCISPGYISTEMIGSLS--EEWK 216
                   *******************9999878887777777655554898888*********************9.9******************98..9*** PP

                   HHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 190 eelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                    ++ +  p +r+ +p e   a++f asd++sy+tG+++++Dg +t
    KKY23011.1 217 TKWMDLVPAKRFCDPAELKGAYVFCASDASSYMTGADIIIDGAYT 261
                   *****************************************9776 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.0   2.8   7.5e-51   1.1e-47       1     192 [.      20     213 ..      20     216 .. 0.93

  Alignments for each domain:
  == domain 1  score: 162.0 bits;  conditional E-value: 7.5e-51
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 k ++vtG+s+GIG+++a++la++Ga+v+++ ++++ + e+a+ l +e   k+ a+q+Dv++ e++ +++++++k++g+ldv+v+NAGi+g +++++++ 
  KKY23011.1  20 KKAVVTGGSRGIGLEVARALAEAGADVAITYSTSKGAVETAARLASEnDVKVQAYQADVRNFESITTTISQIAKDFGGLDVVVANAGISGHKEAEDFTR 118
                 689**************************66666666677777777669************************************************** PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG..TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCT CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvag..kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelre 192
                 e++++++++N+ gvf++++a+++ ++ q  G+ + ++S+ g   +    +a+Y AsKa v++l++sla e+ ++  rvn++ PG+++T+m  +l+e
  KKY23011.1 119 EQYKDIMSTNVDGVFHTAQAAAKIFKPQGHGNLIITASISGslVNLPQKQAVYNASKACVIHLAKSLAVEWVDW-CRVNCISPGYISTEMIGSLSE 213
                 *****************************************7334445789**********************9.***************988776 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   2.6   3.3e-20     5e-17       4     161 ..      23     183 ..      21     191 .. 0.88

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 3.3e-20
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 ++tGG  g+Gle+ar lae ga   +  s s+    + ++  +  ++++++v++++aDv + +++++++++i ++++ +  v+  Ag++  k  e+ t 
  KKY23011.1  23 VVTGGSRGIGLEVARALAEAGADVAITYSTSKG---AVETAARLASENDVKVQAYQADVRNFESITTTISQIAKDFGGLDVVVANAGISGHKEAEDFTR 118
                 79***************************9944...334344556778*************************************************** PP

                 HHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--..TT-HHHHHHHHHHHHHHH CS
          KR 103 edleqvlapKvkGawnLhelled....esldffvlfSSiagllgs..agqanYaaaNaflDalae 161
                 e+++ +++  v+G+ +  ++ ++    +    +++++Si+g l +  ++qa Y a  a++  la+
  KKY23011.1 119 EQYKDIMSTNVDGVFHTAQAAAKifkpQGHGNLIITASISGSLVNlpQKQAVYNASKACVIHLAK 183
                 *************9999888777665588899*********888733688999999998877765 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.6   7.3e-06     0.011       1      74 [.      26     117 ..      26     184 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 7.3e-06
                     TTTSHHHHHHHHHHHHC-.T-EEEEEETT.....HHHCHHHHCTTTCEEEE--TT-CCHHHHHHT.......T-SEEEES---TCC......H CS
  NAD_binding_10   1 GAtGkvGrllvkellarg.ghevtalvRn.....peklaeleaeeglevvegdvtdvedlaealk.......gadaVvsalggggk......d 74 
                     G++ ++G ++++ l+++g ++++t  + +     +++la  e++ ++++ ++dv + e+++ +++       g d+Vv+++g +g       +
      KKY23011.1  26 GGSRGIGLEVARALAEAGaDVAITYSTSKgavetAARLA-SENDVKVQAYQADVRNFESITTTISqiakdfgGLDVVVANAGISGHkeaedfT 117
                     8999*************8555544433333311144444.346689999******9999988888777888899*******766653333331 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   2.8   1.7e-05     0.025       2     104 ..      23     141 ..      22     199 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.7e-05
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HH....HHHHHHHHH.T-SEEEE--S.---HHH...HHHS CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrs....alerlfkee.qpdavihlAa.vggvaa...ssed 83 
                 +VtG++  iG  +++al+e+g +v    +  s+++ +  ++l        + +++d+++ +     + ++ k++ + d+v+  A+  g+ +a   + e+
  KKY23011.1  23 VVTGGSRGIGLEVARALAEAGADVAITYST-SKGAVETAARLasendvkvQAYQADVRNFEsittTISQIAKDFgGLDVVVANAGiSGHKEAedfTREQ 120
                 8********************997766666.44444444445678999**99999999988444455666677778999**99**55555552222355 PP

                 HHHHHHHHTHHHHHHHHHHHH CS
   Epimerase  84 padfieknlqgtlnlleaark 104
                  +d++ +n+ g+ + ++aa k
  KKY23011.1 121 YKDIMSTNVDGVFHTAQAAAK 141
                 567777888888777777765 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   2.8e-05     0.042      33      74 ..      16      57 ..       9      77 .. 0.80
   2 ?   -1.2   0.0      0.72   1.1e+03      60      90 ..      75     108 ..      66     120 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.8e-05
                   --TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHH CS
  THF_DHG_CYH_C 33 elegkkvvvvGrsnivgkplallLleknatVtvchsktkdla 74
                   +l+gkk+vv G s+ +g  +a  L+e++a V ++ s +k   
     KKY23011.1 16 SLAGKKAVVTGGSRGIGLEVARALAEAGADVAITYSTSKGAV 57
                   789****************************99999885433 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.72
                    T-EEEEE-TTSCCHHHHHCC...SSEEEE-SS-T CS
  THF_DHG_CYH_C  60 natVtvchsktkdlaeitre...adivvvavGkp 90 
                    +a V  ++s t+ +++i +     d+vv+ +G  
     KKY23011.1  75 QADVRNFESITTTISQIAKDfggLDVVVANAGIS 108
                    5566666666655555554322268888888876 PP

>> YAcAr  YspA, cpYpsA-related SLOG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.5   3.4e-05     0.051      23      66 ..      37      80 ..      21      81 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.4e-05
       YAcAr 23 klhaeapidmvlvhGgakGaDrlAarWAaergvelvrfpaDwkr 66
                +++aea+ d+++    +kGa   Aar A e+ v++ +++aD+++
  KKY23011.1 37 RALAEAGADVAITYSTSKGAVETAARLASENDVKVQAYQADVRN 80
                56788887777777788************************986 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   2.4e-05     0.036      94     166 ..      36     106 ..      16     110 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.4e-05
                 HHHHHHTT-EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTT.SHHHHHHHHTHHHHHHHHTTTTEEEEEEE-S CS
        PALP  94 vallrllGaevvevggdydeavaaaaelaaegegaylvsqfd.nptviegygtiglEileqlggkpdavvvpvG 166
                 +++l + Ga+v  + ++ + av++aa+la+e  + + v+ +  ++ ++e  +t+  +i++++g  +d+vv+ +G
  KKY23011.1  36 ARALAEAGADVAITYSTSKGAVETAARLASE--NDVKVQAYQaDVRNFESITTTISQIAKDFG-GLDVVVANAG 106
                 5678899************************..5555666666*******************7.9**9999888 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.8   6.6e-05     0.099       4      70 ..      16      89 ..      14     131 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.6e-05
  NAD_binding_7  4 dlkgkkvlvvGgGe.vAarkvrklleagakvtvvapevkeeleelvklaeee......lekdlegadlviaatd 70
                    l gkk +v Gg + ++++ +r l+eaga+v +   ++k ++e   +la+e+      +++d+ +++ + ++++
     KKY23011.1 16 SLAGKKAVVTGGSRgIGLEVARALAEAGADVAITYSTSKGAVETAARLASENdvkvqaYQADVRNFESITTTIS 89
                   68899*****999669*****************87777788886555543333444443444444444444333 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     5e-05     0.074       2      75 ..      24      92 ..      23      96 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5e-05
                   EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT CS
  GDP_Man_Dehyd  2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevq 75
                   +TG++  iG  +a+ L e g +v ++   +s+ ++++ ++la+++    + +++ +++D+++ +s++  ++++ 
     KKY23011.1 24 VTGGSRGIGLEVARALAEAGADVAIT-YSTSKGAVETAARLASEN----DVKVQAYQADVRNFESITTTISQIA 92
                   9****99****************765.456667888888888644....56899**************999986 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.2   2.7e-05      0.04       2      91 ..      21     141 ..      20     145 .. 0.85
   2 ?   -3.6   0.0       3.2   4.7e+03     203     221 ..     172     190 ..     154     194 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.7e-05
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT......................T--TTSHHHHHHHHHHH--S.....EEEE------HHHHHHS CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre......................eldltdaeavaellkeakpd.....vvvnaAAytavDkaEse 70 
                    k +vtG++  +G e+a++lae+g++v  + ++                      ++d+++ e+++++++++ +d     vvv  A      +aE+ 
     KKY23011.1  21 KAVVTGGSRGIGLEVARALAEAGADVAITYSTskgavetaarlasendvkvqayQADVRNFESITTTISQIAKDfggldVVVANAGISGHKEAEDF 116
                    5689*******************998877555689*********************************9999876666699999999999999987 PP

                    HHHHHH....HHTHHHHHHHHHHHH CS
  RmlD_sub_bind  71 eeaaya....vnaeavealAeaaaa 91 
                     +++y+     n+++v + A+aaa+
     KKY23011.1 117 TREQYKdimsTNVDGVFHTAQAAAK 141
                    5555433222899999999999987 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.2
                    .GGG-EEEE---BS-EEHH CS
  RmlD_sub_bind 203 ekelagvyHlanegetswl 221
                    ++++a v Hla + ++ w+
     KKY23011.1 172 NASKACVIHLAKSLAVEWV 190
                    2233555555555555555 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00015      0.23      11      70 ..      35     103 ..      27     122 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00015
                      HHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS..........SSTTTEEEEEE CS
  Methyltransf_25  11 ltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlp..........fedgsfDlvvs 70 
                      +++ala++ g+   +    s++++e+a++ a+e++++v+ +q+d+++++           + g  D+vv+
       KKY23011.1  35 VARALAEA-GADVAITYSTSKGAVETAARLASENDVKVQAYQADVRNFEsitttisqiaKDFGGLDVVVA 103
                      56777777.56667778899*************************9986333333332224445566666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      636  (0.0354733); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 1593.98
//
Query:       KKY23012.1  [L=759]
Description: putative ubiquitin c-terminal hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-37  129.9   0.0    1.6e-37  129.5   0.0    1.2  1  UCH         Ubiquitin carboxyl-terminal hydrolase
    4.1e-19   68.1   0.0    6.6e-11   41.9   0.0    2.7  2  UBA         UBA/TS-N domain
    8.1e-18   65.1   4.6      2e-08   34.2   0.0    3.6  4  UCH_1       Ubiquitin carboxyl-terminal hydrolase
    1.9e-17   63.3   1.2    1.9e-17   63.3   1.2    2.8  4  zf-UBP      Zn-finger in ubiquitin-hydrolases and other prote
     0.0037   17.1   0.0     0.0083   15.9   0.0    1.6  1  UBA_4       UBA-like domain
  ------ inclusion threshold ------
        1.2    8.9   4.1        4.1    7.2   0.0    3.2  3  Zn_Tnp_IS1  InsA N-terminal domain


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.5   0.0   5.2e-41   1.6e-37       1     257 []     269     756 ..     269     756 .. 0.88

  Alignments for each domain:
  == domain 1  score: 129.5 bits;  conditional E-value: 5.2e-41
                 -EES-SSSTHHHHHHHHHHHTSHHHH.HHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHH.......SH-CCEE--HHHHHHHHHHSGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxx RF
         UCH   1 tGlsNlGntCymnsvlQcLfsipelr.dyllsleevkkesrnkkelnesnplgkkgelakalkdlfkell.......kskskavsPkklkktlsklaks 91 
                 tGl+N+Gn+Cy+ s++QcLfs+pe+  +y+l  e+  +++  +++++++  +  +g l+  +++   +++         ++k +sP ++k  +++ +++
  KKY23012.1 269 TGLKNIGNSCYLASAVQCLFSLPEFHkRYFLPNEPPPSVDIPAEDMETQMRKLGDGLLSGDYSHPDTDIIaqpdtpeVPHQKGLSPAMFKHLIGRGHEE 367
                 7*******************************77777766666655433333333346666665556665888899944799***************** PP

                 GTSSSTCEHHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCTTSHHHHHH-EEEEE............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
         UCH  92 fsgykqqDaqEflaflLdqlhedlnrevaeekwkkhlkrndslitdlfegqlks............................................. 145
                 fs+++qqD+ Efl++l++ ++ + +             +++  ++  f++ l++                                             
  KKY23012.1 368 FSTMRQQDSFEFLTHLFKHISLSKHP------------SPEADPVASFRFALEQrlqcmsckrvryrvdeqdnisipvparrkpasseaekgdefesvt 454
                 ******************99988888............4555555666666666666666667777777777777777777777778888888888888 PP

                 .............................EEEEEEB-SEEEEEEESEEETEE.EEE--SEEB--S.EEE-GGGBSS-BTTS-TCS-B............ CS
                 .............................xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx............ RF
         UCH 146 .............................klklkrlPeiLiihlkRfsynss.ksKlntkvefpe.eldlssylaeekkkkteekkk............ 201
                                              + k+k++P+ L i+  Rf+  ++ ++Kl+ +v++ +   d++ y++++ ++ +ee ++            
  KKY23012.1 455 lkecldiftaadtveftcpscnskdgflkQSKFKTFPQNLAINARRFELVNWvPTKLDIPVQVTDePYDMTTYMSHGLQRGEEELPEdassagtsntfv 553
                 888999999999999999*******************************8888*********9975799999999999999998888999********* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
         UCH 202 ................................................................................................... 201
                                                                                                                    
  KKY23012.1 554 pneialssleamgfprvrcekalhatgnsdpeaamnwlfahmedpdideplnlgsssggisglseaadpskidiladmgisapqarkalketggnvera 652
                 *************************************************************************************************** PP

                 ..........................................EEEEEEEEEES.CTTSEEEEEEEE....CTTTTE.....EEEEETTEEEEE-HHCCC CS
                 ..........................................xxxxxxxxxxx.xxxxxxxxxxxx....xxxxxx.....xxxxxxxxxxxxxxxxxx RF
         UCH 202 ..........................................YeLiavvvHsG.slssGHYvayik....nekngk.....WykydDetvkevkeeeev 248
                                                           +eL ++v+H+G s + GHYva+i+    +    +     W+ ++De+v +  + +e+
  KKY23012.1 653 idwvfshpddqgdfgddqpsnsastevssekklpgttstpanFELQSIVCHKGaSIHAGHYVAFIRkeipD----EgnkraWVLFNDEKVVKAADVDEM 747
                 ***************************************************************99955432....133568*********999988899 PP

                 TTCEEEEEE CS
                 xxxxxxxxx RF
         UCH 249 lssayiLfY 257
                 ++ ay++f+
  KKY23012.1 748 KKFAYVYFF 756
                 99*****97 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   2.2e-14   6.6e-11       5      37 .]     558     591 ..     554     591 .. 0.93
   2 !   23.5   0.0   1.3e-08   3.8e-05       2      36 ..     621     655 ..     620     656 .. 0.94

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 2.2e-14
                 HHHHHHHTTS-HHHHHHHHHHTTT.SHHHHHHHH CS
         UBA   5 aiqrLveMGFdreevveALratgn.NeErAveyL 37 
                 a++ L +MGF+r ++++AL atgn ++E+A+++L
  KKY23012.1 558 ALSSLEAMGFPRVRCEKALHATGNsDPEAAMNWL 591
                 7899*****************************9 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 1.3e-08
                 CHHHHHHHHHTTS-HHHHHHHHHHTTTSHHHHHHH CS
         UBA   2 deeaiqrLveMGFdreevveALratgnNeErAvey 36 
                 d+++i+ L +MG +  ++++AL  tg+N+ErA+++
  KKY23012.1 621 DPSKIDILADMGISAPQARKALKETGGNVERAIDW 655
                 6789999*****9999******************9 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.9       0.2   6.1e+02     105     161 ..      34      92 ..      10     160 .. 0.54
   2 ?   -0.9   0.1      0.33   9.7e+02       2      26 ..     270     294 ..     269     299 .. 0.90
   3 !   29.5   0.0   1.9e-10   5.6e-07      97     252 ..     367     519 ..     316     597 .. 0.77
   4 !   34.2   0.0   6.7e-12     2e-08     257     320 .]     678     738 ..     608     738 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.2
                 xxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 105 fnrflldqlekelketkkns.....seeesaieqll......gtkaettirclkCgseksrksstlvl 161
                 +n++++++ ++  + +++++                      + +++t++ c +C++e++ k+s    
  KKY23012.1  34 LNQYIVKTAHSAMRDEPPPKisklaI---------SaeseedRYDTTTKVICYECQAEDVPKTSGNLQ 92 
                 56666666666666655543443321.........022222256788999999999999666655543 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.33
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   2 GLEnhivnsYlNslLQvlyfipplr 26 
                 GL n  + +Yl s +Q+l+ +p++ 
  KKY23012.1 270 GLKNIGNSCYLASAVQCLFSLPEFH 294
                 999****************999986 PP

  == domain 3  score: 29.5 bits;  conditional E-value: 1.9e-10
                 xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x....xxxx.....xxxxxxxxxxxxx RF
       UCH_1  97 slssliq.sfnrflldqlekelketkknsseeesaieqllgtkaettirclkCgseksrksstlvldlkyP.k....psne.....kkeakvtfasilk 184
                 ++s++ q    +fl++ +++ + ++++  s+e ++++  +++ +e++++c++C++ + r +    +++  P +    +  +      + ++vt++++l 
  KKY23012.1 367 EFSTMRQqDSFEFLTHLFKHISLSKHP--SPEADPVA-SFRFALEQRLQCMSCKRVRYRVDEQDNISIPVPaRrkpaS--SeaekgDEFESVTLKECLD 460
                 455565625888888888888877655..77888888.899**************99776666666665566244431..2233434444455666666 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 185 sslerekttrawCekCkryqpteqrktvknlPpvLalnakleeeeelelwktknwlpleiklsldedk 252
                  +    +t + +C++C+++  + +++++k +P+ La+na ++e          nw+p+++++ ++  +
  KKY23012.1 461 IFTAA-DTVEFTCPSCNSKDGFLKQSKFKTFPQNLAINARRFELV--------NWVPTKLDIPVQVTD 519
                 55555.8899******************************96555........999999998776554 PP

  == domain 4  score: 34.2 bits;  conditional E-value: 6.7e-12
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 257 klkeerekakaekeikvYeLqsvvvhigdskesghLvslvkvaekelerdppesqWylFNDflV 320
                 +  +e++   ++++ + +eLqs+v+h g s ++gh+v++++ + +   ++ ++  W+lFND +V
  KKY23012.1 678 EVSSEKKLPGTTSTPANFELQSIVCHKGASIHAGHYVAFIRKEIP---DEGNKRAWVLFNDEKV 738
                 34444444567888999***********9988*********5444...245666*******766 PP

>> zf-UBP  Zn-finger in ubiquitin-hydrolases and other protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.96   2.9e+03      48      58 ..      72      82 ..      57      87 .. 0.79
   2 ?   -4.0   0.1         6   1.8e+04      17      26 ..     120     129 ..     119     133 .. 0.75
   3 !   63.3   1.2   6.4e-21   1.9e-17       1      63 [.     142     215 ..     142     216 .. 0.97
   4 ?   -3.2   0.1       3.7   1.1e+04      28      40 ..     381     393 ..     373     394 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.96
                --EEETTTTEE CS
      zf-UBP 48 lsvycyscdde 58
                 +v cy+c+ e
  KKY23012.1 72 TKVICYECQAE 82
                45889999875 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 6
                 T--EEE-TTT CS
      zf-UBP  17 CghvgCgrks 26 
                 C h +C +++
  KKY23012.1 120 CEHTLCLEQQ 129
                 8899998766 PP

  == domain 3  score: 63.3 bits;  conditional E-value: 6.4e-21
                 -TTTH--.SSEEEETTT--EEE-TTT......T-HHHHHHHHH---EEEETTT--......EEETTTTEEBE-GC CS
      zf-UBP   1 CseCnsenknlWlCLkCghvgCgrks......nghalkHyeetrHplavdlstls......vycyscddevedke 63 
                 Cs C+ + +nlWlCL+Cg+ gCgr++      n+h l+H  + +H +av+l++++      vycy+c++e  d+e
  KKY23012.1 142 CSMCDLK-ENLWLCLECGNLGCGRAQwggvggNSHGLAHTDAVGHGVAVKLGSITpegnadVYCYKCNEERIDPE 215
                 *****99.*************************************************************998876 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 3.7
                 -HHHHHHHHH--- CS
      zf-UBP  28 ghalkHyeetrHp 40 
                  h  kH   ++Hp
  KKY23012.1 381 THLFKHISLSKHP 393
                 6999***999997 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.8e-06    0.0083      12      42 ..     632     662 ..     631     663 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.8e-06
       UBA_4  12 GadeekArqlLeannWdLerAislyFdsgea 42 
                 G++  +Ar+ L+ +++++erAi+  F ++++
  KKY23012.1 632 GISAPQARKALKETGGNVERAIDWVFSHPDD 662
                 89999******************99998876 PP

>> Zn_Tnp_IS1  InsA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.15   4.6e+02       5      16 ..      73      84 ..      70      88 .. 0.85
   2 ?   -0.9   0.2      0.46   1.4e+03      27      35 .]     409     417 ..     407     417 .. 0.90
   3 ?    7.2   0.0    0.0014       4.1       3      15 ..     467     479 ..     465     484 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.15
  Zn_Tnp_IS1  5 sihCPrCsstdV 16
                 + C  C+++dV
  KKY23012.1 73 KVICYECQAEDV 84
                688*******99 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.46
  Zn_Tnp_IS1  27 eRfrCrdCk 35 
                 +R  C +Ck
  KKY23012.1 409 QRLQCMSCK 417
                 8999****8 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0014
  Zn_Tnp_IS1   3 sVsihCPrCsstd 15 
                 +V   CP+C+s d
  KKY23012.1 467 TVEFTCPSCNSKD 479
                 79999******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (759 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.48
# Mc/sec: 4785.70
//
Query:       KKY23013.1  [L=143]
Description: putative yippee family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-09   36.8   0.0    5.5e-09   36.2   0.0    1.2  1  Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centrom
  ------ inclusion threshold ------
       0.92    9.3   4.4        2.8    7.7   4.4    1.9  1  SCNM1_acidic  Acidic C-terminal region of sodium channel modi


Domain annotation for each model (and alignments):
>> Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   6.2e-13   5.5e-09      60     101 ..      22      64 ..      17      67 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 6.2e-13
                   TT--EEEEEEEECSCC.CCCCCTCEEEEGGGEEEEESSSSXXX CS
  Yippee-Mis18  60 gCnsvlGwkYksteee.lkykrglfiletkaitsyslgekeee 101
                    C+svlGwkY+ + ee ++yk+g+filetk+++s+  +e++  
    KKY23013.1  22 RCASVLGWKYVGADEEsQRYKVGKFILETKRVRSTVCWENDAD 64 
                   499***********************************99865 PP

>> SCNM1_acidic  Acidic C-terminal region of sodium channel modifier 1 SCNM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.4   0.00031       2.8      31      42 ..     106     117 ..     103     122 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00031
  SCNM1_acidic  31 enVEFDSDEeeP 42 
                   e+VEFDS +e++
    KKY23013.1 106 EDVEFDSQDEDE 117
                   8******88886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1015.46
//
Query:       KKY23014.1  [L=497]
Description: putative tetratricopeptide repeat domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-16   57.5   1.2    1.7e-15   56.1   0.2    2.2  2  SHNi-TPR      SHNi-TPR
  ------ inclusion threshold ------
       0.09   13.1   1.4        2.1    8.8   0.1    3.1  2  Endotoxin_C2  Delta endotoxin
       0.77   10.1   4.1         22    5.4   0.5    2.8  2  TPR_12        Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> SHNi-TPR  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.26   1.5e+03      20      33 ..      38      51 ..      36      54 .. 0.81
   2 !   56.1   0.2   2.9e-19   1.7e-15       1      38 []     242     279 ..     242     279 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.26
    SHNi-TPR 20 AveDlrkaLeLreq 33
                Av+D++ a eL+ q
  KKY23014.1 38 AVKDYNPAAELYSQ 51
                99999988888755 PP

  == domain 2  score: 56.1 bits;  conditional E-value: 2.9e-19
    SHNi-TPR   1 AdvydlLGEislEnenFpqAveDlrkaLeLreqllppe 38 
                 Ad++dl++EislE e+Fp Av+Dlr+aL+L+e+l+p+e
  KKY23014.1 242 ADTHDLQAEISLEGERFPNAVTDLRSALALKEELYPQE 279
                 9***********************************97 PP

>> Endotoxin_C2  Delta endotoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2     0.051     3e+02      29      59 ..       4      35 ..       1      38 [. 0.87
   2 ?    8.8   0.1   0.00035       2.1      24      39 ..     362     377 ..     354     382 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.051
  Endotoxin_C2 29 aaIdaAqalVdkvtd.stkKaeLqadidkAqe 59
                  ++ d++ +lV++  d  +++a+L   i++A  
    KKY23014.1  4 ETLDEVPELVEAGSDeASQRAQLDDLIAQATS 35
                  789999*****99998999*********9976 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00035
  Endotoxin_C2  24 dtttqaaIdaAqalVd 39 
                   + +tq++Id++++lV 
    KKY23014.1 362 KAVTQKDIDEVKELVT 377
                   679***********97 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.5    0.0037        22       9      56 ..      32      79 ..      26      81 .. 0.85
   2 ?    4.9   0.2    0.0056        33      10      55 ..     249     294 ..     240     298 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0037
      TPR_12  9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyr 56
                 a+  ++ ++y  A el+ +a e++ +l G+   + a  l+ +g +++
  KKY23014.1 32 QATSKYAVKDYNPAAELYSQATELQAELNGEMAIENADLLYSYGKCLY 79
                577888899999999999999999999999999999999999998875 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0056
      TPR_12  10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrly 55 
                 a++ ++ +r+  A + l+ al++ ++l+  ++ + a++ + L+ ++
  KKY23014.1 249 AEISLEGERFPNAVTDLRSALALKEELYPQESSQIAECHYKLSLAL 294
                 66666678999***************************99999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1126  (0.0628033); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3558.81
//
Query:       KKY23015.1  [L=808]
Description: putative dna polymerase epsilon subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.5e-52  175.6   0.0    1.4e-51  174.8   0.0    1.4  1  DNA_pol_E_B  DNA polymerase alpha/epsilon subunit B


Domain annotation for each model (and alignments):
>> DNA_pol_E_B  DNA polymerase alpha/epsilon subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.8   0.0   7.9e-56   1.4e-51       3     210 ..     475     761 ..     473     762 .. 0.98

  Alignments for each domain:
  == domain 1  score: 174.8 bits;  conditional E-value: 7.9e-56
                  EEES--S-TT----HHHHHHHHHHH...HTT--SEEEEES-SSBTTSHHHHHT---S--SSHHHHHHHHTHHHHTTS-TTSEEEEE--TTBTT-S... CS
  DNA_pol_E_B   3 ivsglnldndnrsleaLrkiLqgya..peesppdvlilaGnfvdaahkaiasskvstdekkenfdalalllsilesllekttvvlvPgpnDpans... 95 
                  +++++ ld ++r+leaLrkiL++ya  p e+ p  ++l+Gnfv+ + +  +++++s +e+ke+fd+la++ + ++s+l++tt+v+vPg+nDp+ s   
   KKY23015.1 475 MLGEMLLD-NPRVLEALRKILASYAagPPEEVPLSFVLMGNFVSNPSMGGGTGGGS-IEYKEHFDSLASVVAEFSSILSTTTFVFVPGDNDPWPSafs 570
                  67899999.*****************************************999996.***************************************** PP

                  ....-SBSB----TTTTT--TTT................EEE--BSEEEEET..TEEEEE--S-HHHH---EEESHHHH................... CS
  DNA_pol_E_B  96 ....tvlPqqPlprlllsrikrvfk.............elklvtNPsrieln..svevvltsddivkdlkreslkesnt................... 155
                      t+ P++ +p+l++sri+r f+             e++++tNP r++l+   +evvl++ddi+++++r+ + ++n                    
   KKY23015.1 571 agaaTPIPREGVPDLFTSRIRRAFTnannesgrgegggEAVWATNPARLSLFgpVHEVVLFRDDISSRFQRTAVLFNNHepeaageaeqtaredaeis 668
                  ****************************************************888******************************************* PP

                  .....................................HS-HHHHHHHHHHHHTBS---SS--B-GGGGGGGB-GGG---SEEE---.SS--EE CS
  DNA_pol_E_B 156 .....................................dverlrklvktildqrhlaPlaptlrpvswdkddalvleplPdvlvlpd.elpeFa 210
                                                           +rklvkt++dq  l+P++ ++rpv+wd+ + l l+plP+ lvl d e+p+Fa
   KKY23015.1 669 edgdvarpmeldsditqavshqpqlqqaqsdvsentsAATTTRKLVKTLVDQAFLSPFPTSIRPVHWDYASSLHLYPLPTSLVLTDaEAPPFA 761
                  ***********************************9989999**************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 5913.92
//
Query:       KKY23016.1  [L=326]
Description: putative oligosaccharyl transferase subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.7e-104  348.2   0.0   4.4e-104  347.9   0.0    1.0  1  OST3_OST6    OST3 / OST6 family, transporter family
    0.00039   20.4   0.0    0.00076   19.4   0.0    1.5  1  Thioredoxin  Thioredoxin
  ------ inclusion threshold ------
      0.048   14.5   1.2      0.082   13.7   0.1    1.8  2  HXXEE        Protein of unknown function with HXXEE motif
        8.5    6.5   6.6        1.9    8.6   0.1    2.9  4  QCR10        Ubiquinol-cytochrome-c reductase complex subunit


Domain annotation for each model (and alignments):
>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.9   0.0  9.9e-108  4.4e-104       4     293 .]      29     321 ..      26     321 .. 0.98

  Alignments for each domain:
  == domain 1  score: 347.9 bits;  conditional E-value: 9.9e-108
   OST3_OST6   4 lklakksngviklndenykellkgprdysvvvllTatspqfkCelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllf 102
                 +k  +ks+g ++l+d+ ++el+++prdys++v+lTa++++f+C +C+ef+pe+e++aks++k +k+ + +l+F+++df++g+++Fqkl l++aP+l++f
  KKY23016.1  29 QKYHAKSSGPLELDDALFEELTSAPRDYSFAVILTALDARFGCGICKEFQPEWEILAKSYNKGDKQGEGRLLFGTLDFSNGRNTFQKLMLQTAPVLYVF 127
                 56677889*******************************************************99********************************** PP

   OST3_OST6 103 ppkkgpk..eskkkdtydfsrggfdaealakfisertg..vkirikrppnyskiiitallvlllvlllklrrklllkilksktlwavlslliillftsG 197
                 +p+ gp+   ++++ +ydf+ g+++ae+  ++++++++  +  ++ rp+ny +i++t++++l l+++  ++ +++l+i+++++lwa++sl+ illftsG
  KKY23016.1 128 QPTVGPNakLDSQPVRYDFT-GSQTAEQAYAWLQRHLPdgPRPPLVRPVNYGRIVVTITTLLGLITFGTVAAPYVLPIITNRNLWAAVSLISILLFTSG 225
                 *******75455*******8.6999*************99*********************************************************** PP

   OST3_OST6 198 ymfnqIrgvpfvakdekggisyfaggsqnQfgaEtqivallygllallvilLiklvpriknakvqrvlvivllvlifllfslllslfriKnpgYpy 293
                 +mfn+Ir+vp+va d++ggisyfagg+qnQfg+Etqiva++yg+l++++i+L+ +vpri+n+k+q+++v+v+ ++ + ++s+lls+fr Kn+gYp+
  KKY23016.1 226 HMFNHIRKVPYVAGDGRGGISYFAGGFQNQFGLETQIVAAMYGVLSFATIALALKVPRISNPKTQQTMVFVWGLVSLGMYSFLLSVFRQKNGGYPF 321
                 ***********************************************************************************************8 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.7e-07   0.00076      30      82 ..      71     130 ..      59     159 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.7e-07
                  SHHHHCHHHHHHHHHHHCTT.......TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETT CS
  Thioredoxin  30 CghCkalaPeleklaeelkd.......kvklakvdvdenedlakkyevegiPtlklfkng 82 
                  Cg Ck+++Pe+e la+ +++       ++ +  +d  + +++ +k+  +  P l++f+  
   KKY23016.1  71 CGICKEFQPEWEILAKSYNKgdkqgegRLLFGTLDFSNGRNTFQKLMLQTAPVLYVFQPT 130
                  *******************99999*999****************************9865 PP

>> HXXEE  Protein of unknown function with HXXEE motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.8e-05     0.082      20      95 ..     157     239 ..     148     241 .. 0.64
   2 ?   -1.8   0.1       1.2   5.3e+03      57      70 ..     282     295 ..     254     315 .. 0.46

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.8e-05
       HXXEE  20 nwlkknkes.e............favavaeefilvlvlvvnallvwli.lalallakrepllglallafllvnlltHiaqalvlksYnPG 95 
                  wl+++ +  +            +   v +++ l+ ++++ +++   + ++l+++ +r+++ +++l+++ll+    H++  ++   Y+ G
  KKY23016.1 157 AWLQRHLPDgPrpplvrpvnygrI---VVTITTLLGLITFGTVA---ApYVLPIITNRNLWAAVSLISILLFTS-GHMFNHIRKVPYVAG 239
                 566666666534566655543221...22232222222222222...3357999999*********99999987.899999998888877 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.2
       HXXEE  57 lallakrepllgla 70 
                   +  +++  ++++
  KKY23016.1 282 PRISNPKTQQTMVF 295
                 22222233333333 PP

>> QCR10  Ubiquinol-cytochrome-c reductase complex subunit (QCR10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         3   1.3e+04      28      47 ..     104     123 ..      99     124 .. 0.61
   2 ?    8.6   0.1   0.00042       1.9       1      33 [.     193     225 ..     191     226 .. 0.91
   3 ?    0.5   0.1      0.15   6.5e+02      13      37 ..     261     284 ..     249     287 .. 0.65
   4 ?   -3.6   0.2       2.8   1.3e+04      17      30 ..     295     308 ..     291     310 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3
       QCR10  28 lfftsgvPrvqkdiLqkiPv 47 
                 l f +g   +qk  Lq  Pv
  KKY23016.1 104 LDFSNGRNTFQKLMLQTAPV 123
                 45555555677777777776 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00042
       QCR10   1 vggitlktltrygptlalfGgaagvavlfftsg 33 
                 +g++ + +++ ++++  l+++++++ +l+ftsg
  KKY23016.1 193 FGTVAAPYVLPIITNRNLWAAVSLISILLFTSG 225
                 567788899999*******************98 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.15
       QCR10  13 gptlalfGgaagvavlfftsgvPrv 37 
                  + +a++G+ + +  + ++ +vPr+
  KKY23016.1 261 QIVAAMYGVLSFA-TIALALKVPRI 284
                 5567777776655.55556678887 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 2.8
       QCR10  17 alfGgaagvavlff 30 
                  ++G +++    f+
  KKY23016.1 295 FVWGLVSLGMYSFL 308
                 57999988776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2172.54
//
Query:       KKY23017.1  [L=275]
Description: putative pre-60s factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-27   94.6   6.2    6.3e-27   93.9   6.2    1.3  1  zf-C2H2_2  C2H2 type zinc-finger (2 copies)
  ------ inclusion threshold ------
        1.3    8.9   5.8          9    6.2   0.1    2.4  2  HNH_5      HNH endonuclease


Domain annotation for each model (and alignments):
>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   6.2   7.1e-31   6.3e-27       2      99 ..      32     127 ..      30     129 .. 0.94

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 7.1e-31
   zf-C2H2_2   2 Clfcekkskeveellehmskkhgffipereylv.dleglleylrekieekleClyCekefkslealreHmkkkgHckineeeeeekkeiekfydflskd 99 
                 Clfc+++++e+e++l+hm k+hg+fip re+lv d+e+l++yl+  i ++ eC+ Ce +++++ea+++Hm +kgHcki+    + ++e+++fydf +++
  KKY23017.1  32 CLFCNNEATELEQNLDHMLKAHGLFIPAREHLVvDVETLMNYLHTVIFHYRECISCEVSKQTTEAIQQHMLDKGHCKISL---DPDSEYSEFYDFAESS 127
                 *******999*****************9999999********************************************76...4579********8776 PP

>> HNH_5  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1     0.001         9       1      19 [.      32      50 ..      32      53 .. 0.93
   2 ?    4.1   1.8    0.0048        43       1      19 [.      84     102 ..      84     107 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.001
       HNH_5  1 CiyCgkeiaekelseeHIi 19
                C +C++e +e e + +H++
  KKY23017.1 32 CLFCNNEATELEQNLDHML 50
                *****************97 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0048
       HNH_5   1 CiyCgkeiaekelseeHIi 19 
                 Ci+C+ +++++e+ ++H++
  KKY23017.1  84 CISCEVSKQTTEAIQQHML 102
                 *****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       875  (0.0488036); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.52
# Mc/sec: 1587.99
//
Query:       KKY23018.1  [L=466]
Description: hypothetical protein UCRPC4_g03024 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        2.6    7.6   9.4        1.1    8.8   3.8    2.8  2  BAR             BAR domain
          3    8.0  16.1        2.6    8.2   0.4    5.4  6  MetOD2          Metanogen output domain 2
        3.8    8.0  13.3         63    4.1   0.2    5.4  5  NPV_P10         Nucleopolyhedrovirus P10 protein
        8.8    5.9  17.8      0.076   12.6   5.8    3.1  3  Snf7            Snf7


Domain annotation for each model (and alignments):
>> BAR  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.8   0.00025       1.1      29     209 ..      17     222 ..       2     254 .. 0.81
   2 ?   -3.2   0.2       1.2   5.2e+03     162     196 ..     348     383 ..     342     384 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00025
         BAR  29 eelerrldvteklieklvkelkeylqanpgarakqivleklkeqplelLaesmieagkelgedssfgkalekygeavkklaqteeelekrvetnfldpl 127
                 +e++rr+ +  ++++ ++++  ++l++++++ a+       + +    +a++ + + ++  ++s+  ++ +  +e   +++ t+++l++ v+ + ++ +
  KKY23018.1  17 DEEIRRAIKSLEASTATIEQQIKFLKHQHASIASLS---RENLSRSKNFASATRGLHQKWQYESQ--HTNIVTEELSSEVSATLKNLDEHVAAS-IRVV 109
                 556666666677777777888889999999999988...33566667788888888888888888..888999999999999999999999865.5666 PP

         BAR 128 rellekefkeiqkerkklehkrlDyDaaka.......rlkklktkkskkakde........................ekaeeelrkAqqkfeesneelk 195
                 + ++++++k  + ++ +l++  lD+D + +       r+kkl +   k  +de                        + a+ee+++A    ees + l+
  KKY23018.1 110 KPSVTAQLKGHDRQLSQLNEINLDIDEKDTeekfspeRIKKLSSILAKLMEDEvrtrldriyleesssppngpndqgAGADEEVDNAIRSLEESINPLR 208
                 6677799*******************9876333333366677666666666669999999999999999999**99999******************** PP

         BAR 196 aeLpnllalevefv 209
                  e +++ a+ +++v
  KKY23018.1 209 SEVFDVAAMYTHHV 222
                 *****999999887 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.2
         BAR 162 lktkkskkakde....ekaeeelrkAqqkfeesneelka 196
                  +   s k+  +    + +e  +++++ ++   ne +++
  KKY23018.1 348 TQ--HSTKSA-QsnllSSLESHISESRSEVTLINEAVER 383
                 22..222222.1346788888888888888888887765 PP

>> MetOD2  Metanogen output domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.4   0.00057       2.6      43      81 ..       3      42 ..       1      50 [. 0.79
   2 ?    0.9   0.0      0.11   4.9e+02      50      71 ..      82     103 ..      72     108 .. 0.83
   3 ?   -1.2   0.1       0.5   2.3e+03      50      76 ..     138     164 ..     120     176 .. 0.70
   4 ?    3.1   0.0     0.023     1e+02      48      71 ..     182     205 ..     176     212 .. 0.88
   5 ?   -0.1   0.1      0.23     1e+03      53      79 ..     243     269 ..     229     279 .. 0.73
   6 ?    1.8   0.2     0.058   2.6e+02      50      84 ..     347     381 ..     336     384 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00057
      MetOD2 43 sqtydidddkaevse.eieaalknlekkleaqeerlkqik 81
                +q y+++++++ +s+ ei++a+k+le +  + e+++k +k
  KKY23018.1  3 EQKYGLEKSTLPASDeEIRRAIKSLEASTATIEQQIKFLK 42
                5789999999999862688*******98887777776665 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.11
      MetOD2  50 ddkaevseeieaalknlekkle 71 
                   + e s+e +a lknl +++ 
  KKY23018.1  82 IVTEELSSEVSATLKNLDEHVA 103
                 456799***********99876 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.5
      MetOD2  50 ddkaevseeieaalknlekkleaqeer 76 
                 d + ++s+e  + l+++  kl ++e r
  KKY23018.1 138 DTEEKFSPERIKKLSSILAKLMEDEVR 164
                 445667777777777777777776655 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.023
      MetOD2  48 idddkaevseeieaalknlekkle 71 
                  +d++a + ee  +a+++le++++
  KKY23018.1 182 PNDQGAGADEEVDNAIRSLEESIN 205
                 577888999***********9986 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.23
      MetOD2  53 aevseeieaalknlekkleaqeerlkq 79 
                 a  +++i   l+nl+  l +   rl +
  KKY23018.1 243 ASKQTQILSTLSNLTSDLDNTTDRLLE 269
                 445667778888888888888888766 PP

  == domain 6  score: 1.8 bits;  conditional E-value: 0.058
      MetOD2  50 ddkaevseeieaalknlekkleaqeerlkqikkel 84 
                 + +    ++ ++ l++le ++++  +++  i++ +
  KKY23018.1 347 KTQHSTKSAQSNLLSSLESHISESRSEVTLINEAV 381
                 3334455566799*********9999998888766 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.016        70       9      41 ..      20      52 ..      18      60 .. 0.88
   2 ?    2.2   1.0     0.057   2.6e+02      16      65 ..      91     155 ..      76     165 .. 0.58
   3 ?    0.6   0.0      0.18   8.3e+02      15      39 ..     192     216 ..     189     220 .. 0.80
   4 ?    4.1   0.2     0.014        63      25      62 ..     251     288 ..     236     302 .. 0.55
   5 ?    0.4   0.1      0.21   9.2e+02       4      28 ..     358     384 ..     354     433 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.016
     NPV_P10  9 IradikavddkVdalqqqvddvqenlpdvteln 41
                Ir +ik ++     ++qq++ +++++  +  l+
  KKY23018.1 20 IRRAIKSLEASTATIEQQIKFLKHQHASIASLS 52
                9*******************9999998887765 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.057
     NPV_P10  16 vddkVdalqqqv.ddvqenlpdvtelnekLdaqsaqLaelet.................kvenIqdiL 65 
                 v+  ++ l+++v ++++   p    ++++L +   qL +l++                  +++ ++iL
  KKY23018.1  91 VSATLKNLDEHVaASIRVVKPS---VTAQLKGHDRQLSQLNEinldidekdteekfspeRIKKLSSIL 155
                 4444555555552233333333...5567766666666666644455555555555555555555555 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.18
     NPV_P10  15 avddkVdalqqqvddvqenlpdvte 39 
                 +vd+ + +l+++++ +++++ dv  
  KKY23018.1 192 EVDNAIRSLEESINPLRSEVFDVAA 216
                 7889999999999999998888765 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.014
     NPV_P10  25 qqvddvqenlpdvtelnekLdaqsaqLaeletkvenIq 62 
                 + + +++++l ++t+   ++ a  ++L++++++v++++
  KKY23018.1 251 STLSNLTSDLDNTTDRLLEFHAFRTALENIKAAVTAVS 288
                 33445555555544444444555555555555555544 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.21
     NPV_P10   4 niLlvIradikavddkVdalqqqv..d 28 
                 n L    + i++  + V+ ++++v  d
  KKY23018.1 358 NLLSSLESHISESRSEVTLINEAVerD 384
                 666677777777778888888877442 PP

>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   5.8   1.7e-05     0.076       4     153 ..      18     174 ..      15     186 .. 0.81
   2 ?    0.9   0.2     0.067     3e+02      11      79 ..     191     282 ..     182     294 .. 0.48
   3 ?   -1.7   0.5      0.43   1.9e+03     121     144 ..     375     398 ..     362     409 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH........HHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHH.HHHH CS
        Snf7   4 rsLrkaerkldkkqeslekkikkleael........kklakkgnkdralllLKqkkryekqldqldnqlanleqvslaienlksnk.evlnamk.qgak 92 
                  ++r+a+++l+ ++  +e++ik l+ +          +l +++n + a + L qk +ye+q +++ +   +  +vs +++nl  +  + ++  k ++++
  KKY23018.1  18 EEIRRAIKSLEASTATIEQQIKFLKHQHasiaslsrENLSRSKNFASATRGLHQKWQYESQHTNIVTEELS-SEVSATLKNLDEHVaASIRVVKpSVTA 115
                 67888888888888888888888887776666667778888899********************9887766.457778888876641456666646789 PP

                 HHHHHHHCTCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTT-GGTTHHHHHHHHHHHHHHH CS
        Snf7  93 amkamnkkvdidkidklmdeiedqmekaeeisEalsrslddadeedEeeleaeLdaLeqel 153
                 ++k   ++++  ++ ++  +i ++  + +   E + +   + ++ +E+e+   Ld++  e+
  KKY23018.1 116 QLKGHDRQLS--QLNEINLDIDEKDTEEKFSPERIKKLSSILAKLMEDEVRTRLDRIYLEE 174
                 9999999999..9999999999999999999999999887779999999999999987774 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.067
                 HHHHHHHHHHHHHHHHHHHHHHHHHCTT-.......................HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Snf7  11 rkldkkqeslekkikkleaelkklakkgn.......................kdralllLKqkkryekqldqldnqlanleqvslaienlks 79 
                 +++d+ ++sle+ i+ l++e+ + a+                            +  ++L  + ++ + ld++ + l + ++ ++a+en k+
  KKY23018.1 191 EEVDNAIRSLEESINPLRSEVFDVAAMYThhvyrdpiflslehskqkassqaASKQTQILSTLSNLTSDLDNTTDRLLEFHAFRTALENIKA 282
                 56666677777777766666644444433333433333333333222222223333344444444444444444445555555555555544 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.43
                 TCHHHHHHHHHTT-GGTTHHHHHH CS
        Snf7 121 eeisEalsrslddadeedEeelea 144
                   i+Ea++r     +  dE++++ 
  KKY23018.1 375 TLINEAVERDNLLRPRTDEDDVDG 398
                 568999999986669999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1404  (0.0783089); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.36s 00:00:01.10 Elapsed: 00:00:00.54
# Mc/sec: 2593.45
//
Query:       KKY23019.1  [L=476]
Description: putative cytochrome p450 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-40  137.2   0.1    5.3e-27   94.7   0.0    2.4  3  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0   2.9e-31   5.3e-27     184     379 ..      73     282 ..      61     289 .. 0.87
   2 ?   -3.7   0.1      0.21   3.7e+03     381     393 ..     303     315 ..     303     323 .. 0.76
   3 !   40.0   0.0   1.2e-14   2.1e-10     400     456 ..     370     423 ..     361     428 .. 0.79

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 2.9e-31
                 HHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC.SCSSCSHHHHHHHHC.TTCTCT..SSSSHHHHHHHHHHHHHHHHHHH CS
        p450 184 lskssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsa.kksrrdfldalllak.kekkge..sklsdeelaatvlellfaGvdTt 278
                 l+++   ++l+ +llk  p + +r+  ea ++   ++++++ ++r++++ + +k+ +d ++ l++a+ + kk++  s l+d+++  + +++++aG++T+
  KKY23019.1  73 LQHTLLLIILPRWLLKNAPFSKWRRTYEAYDEWGRYMREMLADKRQEMELDtSKTYNDVISQLVEAQvQGKKDKsvSALTDNQVLGNSFVFILAGHETS 171
                 566666667777799999*****************************9999878999**********9777777799********************** PP

                 HHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-H.....HHHHHHHHHHHHSCSSTTEEEEESSS......CEEETT..EEE-TT-EEE CS
        p450 279 sstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklp.....yldavikEtLRlhpvvplllpRevtk......dvvirg..ylipkGtevi 364
                 ++t+ + +++La +P++q+kl+eE+de+++++   +++   +lp     ++ av +E LR +++v   +p+ v+        v+  +  +++p+G +  
  KKY23019.1 172 ANTIHFSMMFLALRPDIQRKLQEELDEIFQGRPISEWNYDRDLPrlfggMVGAVMNEELRVIQPVI-AIPKWVPPqspqrlIVE--EkeVTVPAGAIFE 267
                 *****************************88776677766777744455789*************9.99998876565543344..336********** PP

                 EEHHHHHT-TTTSSS CS
        p450 365 vnlyalhrdpevfpn 379
                 +++ a+hr+p+++p+
  KKY23019.1 268 LCTAAVHRNPKYWPH 282
                 *************97 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.21
                 TS--GGGGB-TTS CS
        p450 381 eeFdpeRFldekg 393
                 ee +peR+l+ + 
  KKY23019.1 303 EEWKPERWLQPSP 315
                 6899*****9865 PP

  == domain 3  score: 40.0 bits;  conditional E-value: 1.2e-14
                 TT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSCSSEEES CS
        p450 400 faflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppileksglllpp 456
                  +++PF+ G R+C+G+r+A++e+ ++la +++++++el   +d  + +    l++p+
  KKY23019.1 370 GSYIPFSDGHRSCLGRRFAQVEILVALAVIFSQYSIELA-VDDTTDEEID--LMTPE 423
                 47***********************************84.4444444443..66665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 2997.61
//
Query:       KKY23020.1  [L=485]
Description: putative quinate permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-91  306.3  25.5    4.1e-91  306.1  25.5    1.0  1  Sugar_tr  Sugar (and other) transporter
    2.3e-22   79.4  12.3    2.3e-22   79.4  12.3    2.2  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.067   13.3   0.7      0.067   13.3   0.7    2.3  3  FxsA      FxsA cytoplasmic membrane protein


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.1  25.5   6.9e-95   4.1e-91      61     452 .]      23     441 ..      14     441 .. 0.94

  Alignments for each domain:
  == domain 1  score: 306.1 bits;  conditional E-value: 6.9e-95
                 HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  61 iGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifgl 159
                 + ++++ ++++++GRk++l   +++f+igavl+ aa+   ++  +++gRvl+Gig+G+++++vP yi+E++ +++Rg+l++++++a+++G l+++++++
  KKY23020.1  23 FEAVIIATVTEKIGRKWTLQLNVFVFLIGAVLMTAAT--HQLSFIYTGRVLTGIGCGAITATVPSYIAELSVPSIRGILTGFFEVAYQIGSLIGFWINY 119
                 55889999*****************************..56********************************************************** PP

                 HHHTSS-...TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH................HTT CS
    Sugar_tr 160 glnktsn...adgwrillglqlvpallllilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeee...........kaswke 244
                 g+ ++ +   ++ wri++++ql+pa +l+i ++fl ESP +l+ k+k+e++ ++l klr  + ++++++ee   +e+  +ee           +a+++ 
  KKY23020.1 120 GITQNMStdsSTSWRIPMAVQLIPACFLFISGFFLHESPLWLMRKNKTEKTYKTLMKLRHLPHDHQYIQEELGIMEHRLNEEralassygtgpMAYIRG 218
                 **555444899*******************************************************************99999*******999777766 PP

                 HHHHSH......HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHH.HHHHHS-SHHHHHHHHHHHHHHHHHHH...H CS
    Sugar_tr 245 llsskt...vrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnfvatfvai.flvdrfGRRtllllGaagmaicfvilg.iva 338
                  l + +   +r r+l+++ + ++q+l+G  ai yyspt+f++lg+++++l t+i+g v++va+++   +++d +GRR+ ++++++ +++c++i+g +v 
  KKY23020.1 219 ALNELSrpgMRNRVLLVFCMFSLQNLSGASAINYYSPTLFKSLGITETALYTGIYGLVKAVASIIYYgMFIDILGRRNPVIVSSLACSLCLWIIGtYVK 317
                 666555566*********************************************************55***************************7666 PP

                 HHHTTSS..............CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHH CS
    Sugar_tr 339 lllvaks...........kaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfagla 426
                 +  +++             a + +ai++i+++ ++ ++g+++vpw++++E+fp ++R+++ ++a++v+wl++f+++   p+i+++ g +++ ++fa+ +
  KKY23020.1 318 IGHPDTIleaggtlsastAAGGKAAIAMIMIYSVFWSFGLNGVPWIVSAEIFPGALRNLTGTFAAMVQWLVQFVMTKALPYIFSSFG-YGTWFFFAAWM 415
                 666666699999**999999999****************************************************************.*********** PP

                 HHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 427 vlfiifvfffvpetkgrtleeieelf 452
                 ++++++ +ff+petkg+t+++++ lf
  KKY23020.1 416 LIAVVWAYFFLPETKGLTIDQMDVLF 441
                 **********************9987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4  12.3   3.9e-26   2.3e-22      51     291 ..      27     312 ..      20     316 .. 0.82
   2 !    8.6  29.2   0.00013      0.76      10     175 ..     245     429 ..     234     438 .. 0.78

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 3.9e-26
       MFS_1  51 plGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllassl 148
                 +++ +++++Gr+++l l +++f++g++l++ a ++l +++ +rvl+G+g+ga+++++ ++ia+++ ++ rg  +g++ +++++G+++g  +   ++++ 
  KKY23020.1  27 IIATVTEKIGRKWTLQLNVFVFLIGAVLMTAAtHQLSFIYTGRVLTGIGCGAITATVPSYIAELSVPSIRGILTGFFEVAYQIGSLIGFWINYGITQNM 125
                 5677899******************666664568888***********************************************************999 PP

       MFS_1 149 g......Wravfyilaivsllafvlfllllpeepperkrkspkeee..................................kgtgpaplvp......... 198
                 +      Wr ++ +  i ++++f+  +++l e+p    rk+++e+                                   +        +         
  KKY23020.1 126 StdsstsWRIPMAVQLIPACFLFI-SGFFLHESPLWLMRKNKTEKTyktlmklrhlphdhqyiqeelgimehrlneeralA--------Ssygtgpmay 215
                 9*********************99.67888888888888877777789999999*99999999999999998655544440........2355555555 PP

       MFS_1 199 ...awkallkdpvlwillialllf....ffgfsg....lltllplylqevlgls.glllaglllallalvgailallagrlsdrlgrrrrlllalllll 285
                    a+ +l ++     +l+++++f         +    + +++p+ l + lg++ ++l++g +++l+ +v+ i+    g ++d lgrr++ +++ l+++
  KKY23020.1 216 irgALNELSRPGMRNRVLLVFCMFslqnL----SgasaINYYSPT-LFKSLGITeTALYTG-IYGLVKAVASII--YYGMFIDILGRRNPVIVSSLACS 306
                 55777777777733255555555522333....24555*******.5*******7434444.588888888777..9*********************9 PP

       MFS_1 286 laalgl 291
                 l++ ++
  KKY23020.1 307 LCLWII 312
                 998765 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00013
       MFS_1  10 larsilgpalplalaedlgispseigllltlyalgaavaslpl.GrlsdrfGrrrvlllglllfalglllll.fa...ss................... 84 
                  ++s+++   p +l ++lg   +e  l +++y+l+ avas+++ G ++d +Grr  ++++ l+ +l+l+++  ++   ++                   
  KKY23020.1 245 SGASAINYYSP-TLFKSLG--ITETALYTGIYGLVKAVASIIYyGMFIDILGRRNPVIVSSLACSLCLWIIGtYVkigHPdtileaggtlsastaaggk 340
                 23344444445.9999999..67777999*************99***********************78888863434224566666667777777788 PP

       MFS_1  85 ..lwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpee 175
                   + ++++  v+ ++g    + +  ++ a++fp+  r++   ++++   l   +   + +++ ss+g+ ++++++a+ +l+a+v ++++lpe+
  KKY23020.1 341 aaIAMIMIYSVFWSFGL---NGVPWIVSAEIFPGALRNLTGTFAAMVQWLVQFVMTKALPYIFSSFGY-GTWFFFAAWMLIAVVWAYFFLPET 429
                 76779999999999995...77777899******************999999999888888888**97.899999999999977666666655 PP

>> FxsA  FxsA cytoplasmic membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.7   1.1e-05     0.067       7      47 ..      21      61 ..      16      69 .. 0.90
   2 ?   -3.2   0.0       1.6   9.4e+03      14      25 ..     106     117 ..     103     123 .. 0.79
   3 ?   -4.0   0.2       2.6   1.6e+04      12      35 ..     328     351 ..     324     352 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
        FxsA  7 pvlEilllvlvasaiGvlatllllvltallGallvrrqgrr 47
                ++ E +++  v + iG  +tl l v+ +l+Ga+l+ ++ ++
  KKY23020.1 21 LYFEAVIIATVTEKIGRKWTLQLNVFVFLIGAVLMTAATHQ 61
                6789*******************************987765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.6
        FxsA  14 lvlvasaiGvla 25 
                  ++++s+iG++ 
  KKY23020.1 106 AYQIGSLIGFWI 117
                 578999999996 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 2.6
        FxsA  12 lllvlvasaiGvlatllllvltal 35 
                    +  ++a+G+ a+++++++ ++
  KKY23020.1 328 GGTLSASTAAGGKAAIAMIMIYSV 351
                 555666778888888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3359.25
//
Query:       KKY23021.1  [L=334]
Description: putative dihydrodipicolinate synthetase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-34  117.3   0.0    6.7e-34  116.9   0.0    1.1  1  DHDPS     Dihydrodipicolinate synthetase family


Domain annotation for each model (and alignments):
>> DHDPS  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.9   0.0   3.7e-38   6.7e-34      14     280 ..      31     312 ..      17     319 .. 0.83

  Alignments for each domain:
  == domain 1  score: 116.9 bits;  conditional E-value: 3.7e-38
                 -TTSSB-HHHHHHHHHHHHHCT-SEEEESSCCCTGGGS-HHHHHHHHHHHHHHHT..TSSEEEEE---S..SHHHHHHHHHCCCCCT-SEEEEE---SS CS
       DHDPS  14 dedgkldkealrklieflinkgvdglvvaGttGEsatlsteekeqlveiaveaak..gripviagvGsn..stseaiklakkaeeaGadgvlavtPYYn 108
                 d ++ +d    ++  efl+ +g+ g+v+aGt GE+atl ++ek +lv+ ++++ +  gr  + + vG+n   t+  i+ +k a+ aGad +l+++P Y 
  KKY23021.1  31 DPKQSIDWDVQEQHLEFLVRSGLHGIVIAGTNGEAATLELDEKLELVRRTRSIGQklGRPDLPITVGCNggCTHAVIEDTKAAAGAGADFALVLVPSYF 129
                 56799**********************************************9976558888888999884459999********************999 PP

                 --..-HHHHHHHHHHHHHCHSS-EEEEE-HHH.HSHHHHHHHHHHHHTSTTEEEEEE-SS-CTHHHHHH.......CCCSTTSEEEES-GGGHHHHHHT CS
       DHDPS 109 kp..sqeglyqhfkaiieatdlpvilYnvpsr.tgadlspetvkrLaelenivgvKeavgdleevikik.......kevgkdlviysGddelllsalsl 197
                 ++  s   + ++f++ + +   p+++Yn+p+  +g d++ e +  L e +niv+vK + g + +v +         k+ ++ + +++G+ + l +als+
  KKY23021.1 130 HFamSSDAIVSFFQETADQSPIPIVVYNFPGVvAGLDVNSEMLDVLGEHPNIVAVKLTCGGIAKVARAAakfgafgKTESQGFRVLAGQSDWLVPALSV 228
                 97325678*********9999*********85389***************************77776651111111455789***************** PP

                 T-SEEEESCHHCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCCCCSCCHHHHHHHHC.TTSS.SBB.--TTS--S-HHHHH CS
       DHDPS 198 GadGvisvtsniagermrqlikalkeGdlaeaaelnekllplikilfaepnvilvktalel.lGlv.veatlrkPltpleeeeke 280
                 G+ G ++  +n+ ++   ++++++ +G+ +ea++l+ +l +     f  + + + k+++++ l  + +++ +r+P+   ++e+k+
  KKY23021.1 229 GGAGSVTGLANLYPKTCIEIYDLYMAGKREEAEKLQLELAKCE-VGFGMGGINGTKWVVARsLEYPeSSSACRRPYPLFSDEKKK 312
                 *************************************999864.44555666666766543144431455688888777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2189.99
//
Query:       KKY23022.1  [L=562]
Description: putative cellobiose dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-27   96.7   0.0    2.5e-27   96.0   0.0    1.3  1  GMC_oxred_N    GMC oxidoreductase
    3.1e-13   50.5   0.0    5.5e-13   49.7   0.0    1.5  1  GMC_oxred_C    GMC oxidoreductase
    5.4e-05   22.6   0.8    8.1e-05   22.0   0.8    1.2  1  FAD_binding_3  FAD binding domain
    0.00013   21.2   0.9      0.004   16.3   1.4    2.2  2  FAD_binding_2  FAD binding domain
    0.00017   20.4   0.1    0.00028   19.7   0.1    1.2  1  HI0933_like    HI0933-like protein
     0.0012   17.9   0.1     0.0019   17.3   0.1    1.3  1  Lycopene_cycl  Lycopene cyclase protein
     0.0015   17.9   0.1     0.0023   17.3   0.1    1.3  1  FAD_oxidored   FAD dependent oxidoreductase
     0.0019   17.5   0.1     0.0037   16.5   0.1    1.4  1  Thi4           Thi4 family
     0.0023   17.2   0.1      0.004   16.4   0.1    1.3  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0051   17.0   0.1      0.012   15.8   0.1    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
       0.01   15.1   0.7      0.021   14.1   0.7    1.5  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      0.039   13.0   0.2       0.06   12.4   0.2    1.2  1  GIDA           Glucose inhibited division protein A
      0.073   12.6   1.2       0.28   10.7   0.7    2.0  2  DAO            FAD dependent oxidoreductase
       0.14   12.7   0.7        0.3   11.7   0.7    1.5  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0   1.9e-30   2.5e-27       2     277 ..      39     309 ..      38     315 .. 0.78

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 1.9e-30
  GMC_oxred_N   2 delveggGsagsvvAaRLsedpstsvlvleaggreknrl......imvlalalklid.kklntayetepekalngrrlilpaGktlGGgsvvNwsayi 92 
                  d +v+g+G ag  vA RLse +++++ +le gg+ + +       +  +++ l+++d   l + + +ep++ + g+ +    G t+GG+s++N++ ++
   KKY23022.1  39 DVIVVGAGPAGIIVADRLSEVGKKTL-LLERGGKSYGIVggtekpSWLDGTDLSRVDvPGLYKSIFSEPTNLTCGSNVDAYGGCTIGGSSAINAGLFF 135
                  789*******************9885.689999999888787544222333333333133556777899999999999888***************** PP

  GMC_oxred_N  93 RtpaadldeWeeeaglegwssdevlpafkkvetaqalesdlhgvdgrlgvtekgkeesplnkallkaaee.....lGlp...vprdlngk.hqcGvcl 181
                   +pa+d d    +    gw+ ++v++a +k+             +++ +v +  +++++  +   +aa+      +G++   +++  ++k +  G   
   KKY23022.1 136 QPPASDWDTFHPD----GWKAADVQNATQKLY------------ARQASVVSYSENQQFYLQSGYEAARTwlvngAGFSdvtINDQPDEKyQVFGRPA 217
                  *****98887777....9**************............344444444444444444444444331111145556536666655555566666 PP

  GMC_oxred_N 182 lgvtcrtgarqstarawLrpalerpnleiltgakaekiilegrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkev 277
                  ++    +g+r +  +++L+ al+r n  + +++ ++++i +  +++a++V as +++ ++ +   +  v++++Ga++sPq+L++S++G+ + L ++
   KKY23022.1 218 FD--YANGQRGGPVTTYLQSALQRSNFLLHSNVLVRRVIRS--GPKATSVLASVNGSDIEIKLSCSGRVILSCGAIQSPQILMNSAIGDPSTLSKL 309
                  66..**********************************878..***************99999999**********************99998765 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   4.3e-16   5.5e-13      41     144 .]     466     554 ..     426     554 .. 0.71

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 4.3e-16
                  HHHHCTSGGGTTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B-STCGCBSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHH CS
  GMC_oxred_C  41 arkilaaaaldvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMGadpkdsVVDsdlrvhgvdnLrVvDaSvfPsapganptltil 138
                  + ++l ++        ltp + +++ +a++ ++  +++    av +++H++++cr+G      +VD+++ v g++nL+VvDaS++   +++np++ ++
   KKY23022.1 466 LFQTLPSD--------LTPLNIPRNATADEIKEY-ITTPSNYAVGEVNHWSSSCRLG-----ECVDTNTTVIGMENLHVVDASILNP-LTVNPQFGVM 548
                  44444444........667776655444333333.5555555888************.....**********************965.5********* PP

                  HHHHHH CS
  GMC_oxred_C 139 alAeka 144
                  + Ae+a
   KKY23022.1 549 VAAERA 554
                  ****97 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.8   6.3e-08   8.1e-05       2      35 ..      38      71 ..      37      79 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 6.3e-08
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrst 35
                    dV++VGaGpaG++ a  Lse G +++l+e+  +
     KKY23022.1 38 WDVIVVGAGPAGIIVADRLSEVGKKTLLLERGGK 71
                   69****************************9765 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.4   3.1e-06     0.004       1      33 [.      39      71 ..      39      77 .. 0.94
   2 ?    2.1   0.0     0.065        83     143     220 ..     228     305 ..     161     335 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.1e-06
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   DviV+G+G AG   A +++e G+k++++e +++
     KKY23022.1 39 DVIVVGAGPAGIIVADRLSEVGKKTLLLERGGK 71
                   9****************************9876 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.065
                    HHHHHHHHHHTCT.EEEEESEEEEEEEECTTEEEEEEEEETTTTCEE..EEEES.EEEE-----GG..........GSSSBS CS
  FAD_binding_2 143 llarlvesarkag.vdfqerteadeLivedgrvtGavvenpesgrev..rirak.avvlatgGfgrallkellgaaaeaett 220
                     + + ++sa+++    ++ +  ++++i+ + ++t + ++   +g++   ++    +v+l +g+++   ++ l+++a  + +t
     KKY23022.1 228 PVTTYLQSALQRSnFLLHSNVLVRRVIRSGPKATSVLAS--VNGSDIeiKLSCSgRVILSCGAIQS--PQILMNSAIGDPST 305
                    45555666666656999***********888****9999..55555523555667*********98..55555565555555 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   2.2e-07   0.00028       2      34 ..      39      71 ..      38      75 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.2e-07
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakk 34
                 dviv+G+G+AG+  A ++++ gk++llle++ k
   KKY23022.1 39 DVIVVGAGPAGIIVADRLSEVGKKTLLLERGGK 71
                 8****************************9865 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.5e-06    0.0019       1      35 [.      39      71 ..      39      94 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.5e-06
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieasps 35
                   Dv+v+GaGpAg+ +A rl  ++ g k +l+e + +
     KKY23022.1 39 DVIVVGAGPAGIIVADRL--SEVGKKTLLLERGGK 71
                   9*****************..999999999997755 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.8e-06    0.0023       1      32 [.      39      70 ..      39     105 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.8e-06
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveerg 32
                  Dv+VvG+gpaG++ A    + G+k+lL+e+ g
    KKY23022.1 39 DVIVVGAGPAGIIVADRLSEVGKKTLLLERGG 70
                  9****************************754 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   2.9e-06    0.0037      15      50 ..      35      69 ..      26      95 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.9e-06
                HTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 15 yaesDvvivGaGssGLtaayylakkpdlkvailers 50
                + e Dv++vGaG++G+  a  l++  + k+++ler 
  KKY23022.1 35 LQEWDVIVVGAGPAGIIVADRLSEV-GKKTLLLERG 69
                6799********************9.99*****984 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   3.2e-06     0.004       2      33 ..      39      70 ..      38      89 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.2e-06
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlveleg 33
                 dv+v+G+GpAG+ +a +l++ g k++l+e++g
   KKY23022.1 39 DVIVVGAGPAGIIVADRLSEVGKKTLLLERGG 70
                 89*************************97554 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   9.7e-06     0.012       1      29 [.      42      70 ..      42      97 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9.7e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   +vGaG +G   A +L++ g++ llle++ 
     KKY23022.1 42 VVGAGPAGIIVADRLSEVGKKTLLLERGG 70
                   8*************************974 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.7   1.7e-05     0.021       1      30 [.      41      69 ..      41      75 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.7e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 i++GaGPaG+ +a  l ++g  + l lE+g
   KKY23022.1 41 IVVGAGPAGIIVADRLSEVGK-KTLLLERG 69
                 89******************9.689***98 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   4.7e-05      0.06       1      29 [.      39      67 ..      39      82 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.7e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLit 29
                dviV+G+G AG+  A  +++ G k+lL+ 
  KKY23022.1 39 DVIVVGAGPAGIIVADRLSEVGKKTLLLE 67
                8**************************94 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.7   0.00022      0.28       1      29 [.      39      69 ..      39      83 .. 0.90
   2 ?   -0.3   0.0      0.49   6.3e+02     135     202 ..     217     288 ..     113     305 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00022
                EEEEECTSHHHHHHHHHHHHTT..EEEEESS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekg 29
                dv+++G+G +G+ +A  L++ g  ++lle+g
  KKY23022.1 39 DVIVVGAGPAGIIVADRLSEVGkkTLLLERG 69
                8*****************999999******8 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.49
                 EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE...EECT.EEE.EEEEE...EEE--GG CS
         DAO 135 lfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgve...rttp.gen.daada...vVnaaGa 202
                  f++  gq     +t +l++a+++    ++ +  v+++ + + k++ v    + ++ +++ +   +   v++++Ga
  KKY23022.1 217 AFDYANGQ-RGGPVTTYLQSALQRSNFLLHSNVLVRRVIRSGPKATSVLasvNGSDiEIKlS---CsgrVILSCGA 288
                 34333355.56667777888888887777777777776665656666655444333333322...13348888876 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.7   0.00023       0.3       2      33 ..      40      71 ..      39      77 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00023
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdk 33
                v+vvG+G  g+ +A  l+e gkk+ ++er+ k
  KKY23022.1 40 VIVVGAGPAGIIVADRLSEVGKKTLLLERGGK 71
                89**************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.53
# Mc/sec: 3190.26
//
Query:       KKY23023.1  [L=283]
Description: putative srp receptor beta subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-26   90.8   0.0    1.9e-20   73.0   0.0    2.7  2  SRPRB            Signal recognition particle receptor beta su
    1.5e-05   24.9   0.0      0.073   12.8   0.0    2.6  2  ATP_bind_1       Conserved hypothetical ATP binding protein
    0.00018   21.0   0.0      0.018   14.5   0.0    2.8  2  Arf              ADP-ribosylation factor family
    0.00021   21.7   0.0    0.00056   20.3   0.0    1.7  2  AAA_16           AAA ATPase domain
    0.00023   21.2   0.1     0.0011   19.1   0.0    2.1  2  MMR_HSR1         50S ribosome-binding GTPase
    0.00032   20.1   0.0     0.0018   17.7   0.0    1.9  1  Gtr1_RagA        Gtr1/RagA G protein conserved region
    0.00037   20.1   0.0     0.0025   17.4   0.0    2.2  1  GTP_EFTU         Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
       0.01   15.5   0.0       0.88    9.1   0.1    2.2  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.015   15.8   0.1      0.031   14.8   0.0    1.7  2  ABC_tran         ABC transporter
      0.018   14.9   1.3       0.54   10.1   0.5    2.8  2  RsgA_GTPase      RsgA GTPase
      0.018   15.2   0.0          1    9.6   0.0    2.4  2  Roc              Ras of Complex, Roc, domain of DAPkinase
      0.025   15.0   0.0       0.32   11.4   0.0    2.2  2  AAA              ATPase family associated with various cellul
      0.049   13.4   0.0       0.17   11.6   0.0    1.8  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
      0.059   13.9   0.1       0.29   11.7   0.0    2.3  2  AAA_18           AAA domain
      0.066   13.5   0.0        1.2    9.5   0.0    2.3  2  AAA_19           AAA domain
      0.083   13.2   0.1       0.31   11.3   0.0    2.0  3  AAA_22           AAA domain
       0.11   12.5   0.0       0.33   11.0   0.0    1.8  2  AAA_5            AAA domain (dynein-related subfamily)
       0.12   12.5   0.0       0.79    9.8   0.0    2.2  2  Sigma54_activ_2  Sigma-54 interaction domain
       0.13   12.7   0.0       0.43   11.0   0.0    1.7  2  AAA_23           AAA domain
       0.14   12.4   0.2       0.32   11.2   0.2    1.6  1  MTA_R1           MTA R1 domain
       0.14   11.9   0.0       0.27   11.0   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
       0.15   11.7   0.0        5.8    6.5   0.0    2.2  2  SRP54            SRP54-type protein, GTPase domain


Domain annotation for each model (and alignments):
>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.1e-05     0.017       3      38 ..      11      46 ..       9      64 .. 0.74
   2 !   73.0   0.0   2.4e-23   1.9e-20      40     178 ..      82     247 ..      66     249 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.1e-05
                --EEEEE-STTSSHHHHHHHHHHSS---B---SS-E CS
       SRPRB  3 kpavllvGlsdsGKTslftrLttdsvkktvtSqess 38
                +p +ll+G+  sGKTsl  +L ++s  ++ t  +++
  KKY23023.1 11 APVFLLLGPAGSGKTSLVSLLQNKSLPSASTNADPQ 46
                6889*****************999766665555444 PP

  == domain 2  score: 73.0 bits;  conditional E-value: 2.4e-23
                 ETTG...GGTT-SEEEETT-GCCSHHHH..HHHHHHGGEEEEEEEEETTS...-HHHHHHHHHHHHHHHHHHHH............HTT---EEEEEE- CS
       SRPRB  40 alkvksekgskltliDfPGheklrqkll..eklkaksslkglvfvvDSti...dpkevkevAEllyeillitek............lkdavdiliACnK 121
                   + +++ g+   +iD PGh klr+ ++   +   + sl g++fv+DS++    p  +++ A +l +il+   +            ++ +++il+A nK
  KKY23023.1  82 IIQQQKSSGTPYFIIDTPGHGKLRSTVSltPTNTLHPSLYGVIFVIDSSAldtSPTYLTDAATYLHSILITLLQrrrtksklsklsRERHIPILLAANK 180
                 3333467788999***********97651155566778**********984335788***********98654311111111111135689******** PP

                 TTSTT---HHHHHHHHHHHHHHHHHCHHHHHH--..........----T....T--------GGGSS CS
       SRPRB 122 qelflakspklikdaLEkElnkiierrskalkel..........deeedksavlakkgkdFkfdqle 178
                 q+lf++ ++  +k+ LEkE+++i+e+r + + ++          +++++ +  l++  ++F f  l+
  KKY23023.1 181 QDLFTSLPAGTVKERLEKEIQRIRESRRRGVVGVdvdadgnfgaNDDDEFEEMLETGERGFSFRALA 247
                 *******************************999888888888766666666676677788888775 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0     0.001      0.82       2      18 ..      17      33 ..      16      45 .. 0.84
   2 !   12.8   0.0   8.9e-05     0.073      89     149 ..      89     153 ..      67     251 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.001
  ATP_bind_1  2 vGpaGsGKttfvgalse 18
                +GpaGsGKt++v+ l++
  KKY23023.1 17 LGPAGSGKTSLVSLLQN 33
                7***********98865 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 8.9e-05
  ATP_bind_1  89 eeddyllfDtPGQielfthseslakiveeLesefalvvvyLvDsqrltd.......ptkfisgllsal 149
                   + y+++DtPG  +l   ++     +++L+     +v++++Ds  l++       ++++++++l++l
  KKY23023.1  89 SGTPYFIIDTPGHGKLRSTVSLTP--TNTLH-PSLYGVIFVIDSSALDTsptyltdAATYLHSILITL 153
                 2347***************99999..99999.7999********998885444444555555555544 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.11        89      18      39 ..      15      36 ..      11      54 .. 0.85
   2 !   14.5   0.0   2.2e-05     0.018      81     152 ..     119     210 ..      85     221 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.11
                EEEESTTSSHHHHHHHHHHSSC CS
         Arf 18 lllGLDnaGKtTilkklkleel 39
                lllG  ++GKt ++  l++++l
  KKY23023.1 15 LLLGPAGSGKTSLVSLLQNKSL 36
                899999**********999876 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.2e-05
                 TESEEEEEEETT-CT....THHHHHHHHHHHC....TSGCCT..........TSEEEEEEE-TTSTTSS-HHHHHHHTT..GGGSSSSSSEE CS
         Arf  81 ktdavifvvDsadre....RleeakeeLkall....eeeelk..........evallvlaNKqDlpealseeelrellg..leelkgkrkle 152
                 +  +vifv+Ds+  +     l++a + L+++l    ++++ k          ++++l+ aNKqDl ++l +  ++e l+  +++++ +r+  
  KKY23023.1 119 SLYGVIFVIDSSALDtsptYLTDAATYLHSILitllQRRRTKsklsklsrerHIPILLAANKQDLFTSLPAGTVKERLEkeIQRIRESRRRG 210
                 556788888887654233357777777776542222444433445566666699*********************99871144576666555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   6.9e-07   0.00056      21      63 ..       8      46 ..       2      89 .. 0.79
   2 ?   -1.5   0.0       3.5   2.8e+03      72      72 ..     174     174 ..     122     236 .. 0.60

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 6.9e-07
      AAA_16 21 sgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63
                 ++ ++ ll G++G+GK+slv  l++    +    +++++d  
  KKY23023.1  8 PPTAPVFLLLGPAGSGKTSLVSLLQNKSLPS----ASTNADPQ 46
                3444999******************988877....66666666 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.5
      AAA_16  72 l 72 
                 +
  KKY23023.1 174 I 174
                 2 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.3e-06    0.0011       3     114 .]      15     180 ..      13     180 .. 0.58
   2 ?   -2.3   0.0       5.5   4.5e+03      65     100 ..     195     233 ..     189     241 .. 0.44

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.3e-06
                 EEEESTTSSHHHHHHHHHTS.....TEEESSSTTSSSSE...EEEEEE....ET.....................TEEEEEEECGGCSSHHHHHHHHHH CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge.....kaivsdkpgtTrdi...negrvk....lk.....................gkeielvDtpGliegaseekglgk 68 
                 +++G   +GK++L++ l ++        +  +p  T +    +   +k    +                      g+++ ++DtpG   + ++  +l+ 
  KKY23023.1  15 LLLGPAGSGKTSLVSLLQNKslpsaSTNADPQPSPTHTSqtpRSVPLKlpptIAlgtnkyrsendtsiiqqqkssGTPYFIIDTPG-HGKLRSTVSLTP 112
                 689999***********9965542222444455444444101444444443300334444444444444444443455********.543444447777 PP

                 HHHHHHCTSEEEEEEETT........................TTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  69 aflaleeadlillvvdas........................eeklkpldeeleelleeakkplilvlnk 114
                 +   + +   +++v+d+s                        +   ++ +++l +l +e+++p++l++nk
  KKY23023.1 113 TNTLHPSLYGVIFVIDSSaldtsptyltdaatylhsilitllQ--RRRTKSKLSKLSRERHIPILLAANK 180
                 7777778899******778887776666555444433333221..1334455666666688888888887 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.5
                 HHHHHHHHHHCT...SEEEEEEETT..TTCSHHHHHHHHHH CS
    MMR_HSR1  65 glgkaflaleea...dlillvvdas..eeklkpldeeleel 100
                 +l+k++++++e+    ++ + vda       +++d e+ee+
  KKY23023.1 195 RLEKEIQRIRESrrrGVVGVDVDADgnF--GANDDDEFEEM 233
                 4555555555532113444444433220..12333444444 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.2e-06    0.0018       3     140 ..      15     200 ..      13     215 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.2e-06
   Gtr1_RagA   3 LLmGksgsGKtsmrsiiFdnylardtlrlgati...............................dveksevrflgnltlnlwDcgGqeafveeylssqk 70 
                 LL+G+ gsGKts+ s + ++ l+   ++                                    d++  + + ++     ++D +G  ++  +   +  
  KKY23023.1  15 LLLGPAGSGKTSLVSLLQNKSLPSASTNADPQPspthtsqtprsvplklpptialgtnkyrsenDTSIIQQQKSSGTPYFIIDTPGHGKLRSTVSLTPT 113
                 9**********************9988887666788899**********************98855555555666677779************999*** PP

   Gtr1_RagA  71 eeifrnvgvliyVfDve...............sreleedletlkeilealrqyspeakvfvli..hKmDliqedereeifeerkeei 140
                 +++  +   +i+V+D++                +++  +l + +++ ++l++ s+e ++ +l+  +K Dl ++    ++ e+ ++ei
  KKY23023.1 114 NTLHPSLYGVIFVIDSSaldtsptyltdaatyLHSILITLLQRRRTKSKLSKLSRERHIPILLaaNKQDLFTSLPAGTVKERLEKEI 200
                 ****************98877655555543322234444444455556666666666666665445666666555555555555555 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.1e-06    0.0025      55     150 ..      66     207 ..      11     259 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.1e-06
                 CSSCEEEEEE..........TTCSSEEEEEEEESSSGGGHHHHHHH.....HHT-SEEEEEEETTTB.......................STHHHHHHH CS
    GTP_EFTU  55 Tiksaaisle..........ketkkylinliDtPGHvdFskevirg.....lrvlDgavlvvdaveG.......................vepqteevl 115
                 Ti   + ++           ++++ + + +iDtPGH +  ++v+ +        l g+++v+d++                               ++ 
  KKY23023.1  66 TIALGTNKYRsendtsiiqqQKSSGTPYFIIDTPGHGKLRSTVSLTptntlHPSLYGVIFVIDSSALdtsptyltdaatylhsilitllqRRRTKSKLS 164
                 3333333333555555555447888999*************9987764443445679******995455666777778888888888874444555677 PP

                 HHHHHTTTEEEEEEESCGST........HHHHHHHHHHHHHHH CS
    GTP_EFTU 116 rlalkegvpiivfiNKmDrl........kaelkeiveevkqkl 150
                 +l +++++pi ++ NK D          k++l++ ++ ++++ 
  KKY23023.1 165 KLSRERHIPILLAANKQDLFtslpagtvKERLEKEIQRIRESR 207
                 8889999************987776666555555555555433 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1    0.0011      0.88       1      20 [.      12      31 ..      12      40 .. 0.83
   2 ?    4.2   0.0     0.035        28     109     170 ..     117     204 ..      76     209 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0011
                EEEEEEESTTCCHHHHHHHH CS
        cobW  1 pvtvltGflGsGKTtLlnhl 20
                pv++l G+ GsGKT+L++ l
  KKY23023.1 12 PVFLLLGPAGSGKTSLVSLL 31
                68899***********9754 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.035
                 CCCECEEEEEEETTTH........................CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC.....HHHHHHHHHHHH CS
        cobW 109 dltldavvavvDaknl.......................eaeeekieekaedqlaaadllvlnKtDlldee...allekleerlrqln 170
                 +  l +v++v+D+++l                        ++++++ +k+ ++     ll  nK Dl ++    +  e+le+++++++
  KKY23023.1 117 HPSLYGVIFVIDSSALdtsptyltdaatylhsilitllqRRRTKSKLSKLSRERHIPILLAANKQDLFTSLpagTVKERLEKEIQRIR 204
                 5567799999999999999999999999999999999886777788888888888889999999999887642244566666666665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.8e-05     0.031      14      51 ..      14      50 ..      10     177 .. 0.76
   2 ?   -2.1   0.0       6.3   5.1e+03      76      76 ..     192     192 ..     148     238 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.8e-05
                EEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkpteGeilldgkdlke 51
                  ++G+ G+GK++L++ll +++ p + +   d +++ +
  KKY23023.1 14 FLLLGPAGSGKTSLVSLLQNKSLPSASTN-ADPQPSPT 50
                569****************9999876663.45444444 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 6.3
                 H CS
                 x RF
    ABC_tran  76 v 76 
                 v
  KKY23023.1 192 V 192
                 2 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.5   0.00067      0.54     101     123 ..      13      35 ..       9     106 .. 0.69
   2 ?    1.8   0.0      0.25     2e+02      42      73 ..     167     197 ..     142     211 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00067
                  EEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpel 123
                  + +l+G+ G GK++L+  l+++ 
   KKY23023.1  13 VFLLLGPAGSGKTSLVSLLQNKS 35 
                  5689***************9983 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.25
                  HHHTT-EEEEEEE-GGG--HHHHHHHHHHHHH CS
  RsgA_GTPase  42 aeekgiepvivlnKiDlleeeeeleelkeele 73 
                    e++i+++++ nK Dl ++   + ++ke+le
   KKY23023.1 167 SRERHIPILLAANKQDLFTSLP-AGTVKERLE 197
                  457889999********99887.444444443 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0    0.0013         1       3      24 ..      15      36 ..      14      50 .. 0.85
   2 ?    3.0   0.0      0.14   1.1e+02      72     119 ..     134     182 ..     128     183 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
                EEESSTTSSHHHHHHCHCT-CC CS
         Roc  3 vlvGdsgvGKtsllkrfvedkf 24
                +l+G +g+GKtsl++ +++++ 
  KKY23023.1 15 LLLGPAGSGKTSLVSLLQNKSL 36
                79************99988765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.14
                 T-HHHHCTSCEEEEEEEGH..HHHCHHHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  72 lhplylreaalailvydsr..ssenlkeWlkelkkvagkspvilvgnkiD 119
                 + p yl++aa ++  +  +  + ++ k+ l++l++  +++p++l +nk D
  KKY23023.1 134 TSPTYLTDAATYLHSILITllQRRRTKSKLSKLSR-ERHIPILLAANKQD 182
                 67899999999997655441145566667777765.458999******99 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00039      0.32       2      21 ..      15      34 ..      14      97 .. 0.90
   2 ?    1.6   0.0      0.41   3.4e+02      83     118 ..     144     187 ..      98     205 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00039
                EEESSTTSSHHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavake 21
                ll Gp G GKT+l++ + ++
  KKY23023.1 15 LLLGPAGSGKTSLVSLLQNK 34
                89************999887 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.41
                 HHHHHHHHHHHHHTTTS........SSTEEEEEEESSGGGSTHH CS
         AAA  83 ervvnqLlteldgvkkk........eskvivigatnrpdkldpa 118
                 + + + L+t l++ ++k        e+++ +++a+n+ d +++ 
  KKY23023.1 144 TYLHSILITLLQRRRTKsklsklsrERHIPILLAANKQDLFTSL 187
                 45556666666666666677777776779999999998876643 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00021      0.17       5      32 ..      15      42 ..      12      46 .. 0.89
   2 ?   -2.4   0.0       4.5   3.7e+03      40      46 ..      95     101 ..      85     104 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00021
   PduV-EutP  5 lliGkvgsGKttLtqalkgeelkYkktq 32
                ll+G+ gsGKt+L   l++++l   +t 
  KKY23023.1 15 LLLGPAGSGKTSLVSLLQNKSLPSASTN 42
                79******************99877775 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.5
   PduV-EutP  40 viDtPGe 46 
                 +iDtPG 
  KKY23023.1  95 IIDTPGH 101
                 79***95 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00036      0.29       2      21 ..      15      34 ..      15     175 .. 0.83
   2 ?   -2.5   0.0       8.6     7e+03      15      42 ..     193     227 ..     189     240 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00036
      AAA_18  2 lltGtpGvGKttlakeLskr 21
                ll G++G+GKt+l   L+++
  KKY23023.1 15 LLLGPAGSGKTSLVSLLQNK 34
                589**************887 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 8.6
      AAA_18  15 akeLskrl.gf......gvnlrdvakenglllevd 42 
                  ++L+k+   +      gv+  dv ++++    +d
  KKY23023.1 193 KERLEKEIqRIresrrrGVVGVDVDADGNFGANDD 227
                 44444443222444444555555555555554444 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0    0.0014       1.2       9      28 ..      10      29 ..       3      54 .. 0.83
   2 ?    1.5   0.0      0.42   3.4e+02       6      28 ..      85     108 ..      80     120 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0014
      AAA_19  9 kekvllvtaGpGtGKTrvlk 28
                +++v+l+++++G+GKT ++ 
  KKY23023.1 10 TAPVFLLLGPAGSGKTSLVS 29
                67899***********9876 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.42
      AAA_19   6 e.alkekvllvtaGpGtGKTrvlk 28 
                 + +++ ++ +++  pG GK r ++
  KKY23023.1  85 QqKSSGTPYFIIDTPGHGKLRSTV 108
                 447888999**********87665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00038      0.31       6      30 ..      12      36 ..       8      98 .. 0.79
   2 ?   -1.6   0.0       3.7     3e+03      97      97 ..     177     177 ..     122     215 .. 0.55
   3 ?   -2.4   0.0       6.5   5.3e+03      26      50 ..     193     219 ..     185     235 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00038
      AAA_22  6 gilvvtGesGtGKTtllrrlleqld 30
                 + ++ G++G+GKT l+  l+++  
  KKY23023.1 12 PVFLLLGPAGSGKTSLVSLLQNKSL 36
                567899************9999864 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.7
      AAA_22  97 i 97 
                  
  KKY23023.1 177 A 177
                 2 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 6.5
      AAA_22  26 leqldeeakaee..erpevvfvtlpss 50 
                 +e+l++e++  +  +r++vv v++ ++
  KKY23023.1 193 KERLEKEIQRIResRRRGVVGVDVDAD 219
                 444444444444556777776666655 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0004      0.33       2      20 ..      14      32 ..      13      51 .. 0.90
   2 ?   -2.6   0.0         6   4.9e+03      84      95 ..     149     160 ..     141     187 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0004
                EEEE--SSSSHHHHHHHGG CS
       AAA_5  2 vlLvGppGtgKselaerla 20
                +lL+Gp G+gK++l+  l 
  KKY23023.1 14 FLLLGPAGSGKTSLVSLLQ 32
                69*************9886 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6
                 HHHHHHHSSEEE CS
       AAA_5  84 sLlslleerrll 95 
                 +L++ll +rr  
  KKY23023.1 149 ILITLLQRRRTK 160
                 677777777665 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00097      0.79      18      49 ..       7      39 ..       3      64 .. 0.79
   2 ?   -0.9   0.0         2   1.7e+03      14      36 ..      83     105 ..      80     135 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00097
                     HT-SS-EEE.EEETT--HHHHHHCC--TTS-EE CS
  Sigma54_activ_2 18 aqsklpvfl.tGekGsgkelvArlLhknsgpwl 49
                     +  ++pvfl +G++Gsgk++   lL+++s p  
       KKY23023.1  7 RPPTAPVFLlLGPAGSGKTSLVSLLQNKSLPSA 39
                     55678998537****************998844 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2
                      HHHHHT-SS-EEEEEETT--HHH CS
  Sigma54_activ_2  14 LeqaaqsklpvfltGekGsgkel 36 
                      ++q ++s +p f++  +G gk  
       KKY23023.1  83 IQQQKSSGTPYFIIDTPGHGKLR 105
                      56778889999999999999865 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00053      0.43      19      36 ..      11      28 ..       8      32 .. 0.88
   2 ?   -1.8   0.0       4.4   3.6e+03     175     175 ..     187     187 ..     132     218 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00053
      AAA_23 19 kgltlItGpNGaGKTTil 36
                 +++l+ Gp G+GKT+++
  KKY23023.1 11 APVFLLLGPAGSGKTSLV 28
                699*************97 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 4.4
      AAA_23 175 l 175
                 l
  KKY23023.1 187 L 187
                 2 PP

>> MTA_R1  MTA R1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00039      0.32       4      65 ..     140     204 ..     137     215 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00039
      MTA_R1   4 TRqAFyLqttkltrlaRrlCrdllrlrhaARrPfvpiNiaaikaecaarlaeksa.....kkllklk 65 
                 T +A yL+   +t l Rr  ++  +l +++R+ ++pi +aa k++  + l++ ++     k++ +++
  KKY23023.1 140 TDAATYLHSILITLLQRRRTKS--KLSKLSRERHIPILLAANKQDLFTSLPAGTVkerleKEIQRIR 204
                 66899*************7777..5579***********************9998544433444444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00033      0.27      24      39 ..      13      28 ..       5      43 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00033
      AAA_29 24 atlltGpsGsGKSTll 39
                ++ll Gp GsGK++l+
  KKY23023.1 13 VFLLLGPAGSGKTSLV 28
                68************98 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0071       5.8       3      23 ..      13      33 ..      11      41 .. 0.85
   2 ?    3.1   0.0      0.08        65      74     172 ..      81     176 ..      65     194 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0071
                EEEEEESTTSSHHHHHHHHHH CS
       SRP54  3 villvGlqGaGKTttlaKLaa 23
                v+ll+G+ G+GKT+ ++ L +
  KKY23023.1 13 VFLLLGPAGSGKTSLVSLLQN 33
                789**********99987765 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.08
                 HHHHHHHHTTSSEEEEEE--SSTTHHHHHHHHHHHHHHH.SSSEEEEEEETTBHTHHHHHHHHHHHHSSCSEEEEESTTSSSSTTHHHHHHHHHTS-EE CS
       SRP54  74 eavekakeekidvvlvDTaGrlqndkelmeelkkikkvv.kpdevllvldattgqeavkqakaFkeavgitgviltklDgdakgGaalsiaaelklPik 171
                   ++++k++++ + ++DT G+ +  + +   l+ +++   + + v++v+d+++  +    ++  + a+ + ++ +t l  +    ++ ++++e ++Pi 
  KKY23023.1  81 SIIQQQKSSGTPYFIIDTPGHGKLRSTV--SLTPTNTLHpSLYGVIFVIDSSALDTS--PTYLTDAATYLHSILITLLQRRRTKSKLSKLSRERHIPIL 175
                 56889999999999****9988766554..344444444345677888887664443..3344445555666666666666666666666666666666 PP

                 E CS
       SRP54 172 f 172
                 +
  KKY23023.1 176 L 176
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.52
# Mc/sec: 1648.45
//
Query:       KKY23024.1  [L=527]
Description: putative cystathionine beta-synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-67  225.9   0.1    8.4e-67  225.6   0.1    1.1  1  PALP      Pyridoxal-phosphate dependent enzyme
    7.5e-13   48.7   0.3    1.4e-07   31.8   0.0    3.3  3  CBS       CBS domain


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.6   0.1   9.3e-71   8.4e-67       1     294 []       4     303 ..       4     303 .. 0.90

  Alignments for each domain:
  == domain 1  score: 225.6 bits;  conditional E-value: 9.3e-71
                 GGGCSSS--EEEECCTCCCCCCE..EEEEEGGGSTTSBTTHHHHHHHHHHHHTT...TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHH CS
        PALP   1 ltlgigpTPlvrlprlskelgvp..lflKlEslnptgSfKdRgaeyllarlkeg...tgaktvveassGNhgralAaaaallGlkvtivvpadaspekv 94 
                 +t++ig+TPlvrl+++ k lg++  +++KlE++n +gS+KdR a  +++++++    ++++t++e +sGN+g++lA++aa+ G+k +i +p+++s+ekv
  KKY23024.1   4 ITQQIGNTPLVRLNKIPKSLGIEatVYAKLEFFNAGGSVKDRIALRMIEEAEKSgriKPGDTLIEPTSGNTGIGLALVAAVKGYKTIITLPEKMSAEKV 102
                 6899**********************************************88888******************************************** PP

                 HHHHHTT-EEEEECCH..HHHHHHH...HHHHHHHSTTCEE--TTTSHHHHHH.HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EE CS
        PALP  95 allrllGaevvevggd..ydeavaa...aaelaaegegaylvsqfdnptvieg.ygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrv 187
                   l++l+a++++++++  +d+ +++   a++l++e ++a++++q++np++ ++    ++ Ei+ q+ gk+ avv+++G+Gg+i+Gia+gl++++p+++v
  KKY23024.1 103 SVLKALNATIIRTPTEaaFDSPESHigvARRLEKELPNAHILDQYGNPDNPLAhEYGTAEEIYTQTEGKISAVVAGAGTGGTITGIARGLRKHNPNIKV 201
                 *************55555888888888899***********************999******************************************* PP

                 EEEEECTTCGGTTCCS..S.SS..B.SSS.CCSTCSCGTTCCHHHH.SEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH.HHHHHHCCTT CS
        PALP 188 igvepegsdalarslragrrvtvpvsdtiadglavgspselafell.drlvdeivtvsdeealeamrllarregivvepssaaalaal.klreagelke 284
                 i+++p gs      +     ++   +   ++g++ +    +  ++l ++lvd+ +  +d e ++ +r+l  +eg++++ ss+ a+aa+ +++++ +l++
  KKY23024.1 202 IAADPYGSILALPEI---LNQDHANEAYKVEGIGYD----FIPDVLdQKLVDKWYKTDDRESFAFARRLIAEEGLLCGGSSGSAMAAMvRAAKDLNLGK 293
                 ******776555555...233333335666777776....5555544556667777******************************************* PP

                 CEEEEEEE-B CS
        PALP 285 gdrvvviltg 294
                 +d++vvil++
  KKY23024.1 294 DDVIVVILPD 303
                 *******986 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   1.5e-11   1.4e-07       4      56 ..     362     416 ..     359     417 .. 0.89
   2 ?   -1.1   0.0      0.31   2.7e+03      13      38 ..     421     443 ..     419     449 .. 0.74
   3 !   13.1   0.0   1.1e-05       0.1       9      56 ..     474     523 ..     467     524 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1.5e-11
                 HSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEE..ETTTBEEEEEEHHHHHHHHH CS
         CBS   4 imtrdvvtvppdttleealelmrekgvsrlPVV..dedgklvGivtlrDllrall 56 
                 +  +++ tv+  ++l+ a+e+mr++g+++lPV+    + +lvG++tl   l+ ++
  KKY23024.1 362 LRLKPITTVTAGSPLSSAIEIMRDRGFDQLPVLasTTSRRLVGLITLGNMLSRIS 416
                 5568999*************************98877889********9999886 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.31
                 ETTSBHHHHHHHHHHHTSSEEEEEET CS
         CBS  13 ppdttleealelmrekgvsrlPVVde 38 
                 + ++++++++  +   ++s + V+d 
  KKY23024.1 421 TASSPVKDVMFDF--QKISEV-VTDP 443
                 6789999999999..558888.8865 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 1.1e-05
                 CEEEETTSBHHHHHHHHHHHTSSEEEEE...ETTT..BEEEEEEHHHHHHHHH CS
         CBS   9 vvtvppdttleealelmrekgvsrlPVV...dedg..klvGivtlrDllrall 56 
                 +v ++ dt+l+ + + + e   ++  VV   d+ g  k++ +vt+ Dll +++
  KKY23024.1 474 YVEITMDTPLSALNRFL-E--WRSAAVVterDDKGnmKPIAVVTKVDLLTWMM 523
                 577889999********.7..55555777997777778***********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3581.04
//
Query:       KKY23025.1  [L=1102]
Description: putative vacuolar h+ ca2+ exchanger [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-49  168.8   2.9    2.7e-49  168.1   2.9    1.3  1  Cellulase  Cellulase (glycosyl hydrolase family 5)
    8.1e-40  136.8   0.0    1.5e-39  136.0   0.0    1.4  1  Cyclin     Cyclin
    6.6e-26   91.1  27.2      2e-14   53.8   6.9    2.3  2  Na_Ca_ex   Sodium/calcium exchanger protein


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.1   2.9   4.6e-53   2.7e-49       1     280 [.     480     746 ..     468     747 .. 0.89

  Alignments for each domain:
  == domain 1  score: 168.1 bits;  conditional E-value: 4.6e-53
                 ETTTSEEEEGEEECETTSCGG..SHHHHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESSTTTCSSSSTTTT CS
   Cellulase   1 vdasgkpvnlkglstswgnpy..ttkalidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildiHseegwltkadgnss 97 
                 v++sg++++ ++l+   g++y  + +++id++ ++gfn++R+++ +++l++++ ++++++++l+ ++  v y+++ g+ +++++H+       ++++s+
  KKY23025.1 480 VNESGAEFGEANLPGTLGTDYtwPSTSTIDTLYEQGFNIFRVNILMERLTPDSLTGSFNSTYLAGLTSTVSYITDLGADAVIEPHN------FGRYYSE 572
                 4556666655555555999999999*************************************************************......4778*** PP

                 HHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTTS.SEEEEECHHHHTBHHHHHCTSG....SSSS CS
   Cellulase  98 edtaeeffkklwtqiAerykkndevvifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgpn.rliivegnswsgnldgavlndP....ndsq 191
                 + t ++ f+++w+++A+++  +++ vif++ NE+h+++++          v +++++ai+ IRa+g++ ++i+vegns+sg+ + +  nd     +ds+
  KKY23025.1 573 IITDTSGFEAWWKKVATEF-ASNSKVIFDTNNEYHDMDQT---------LVLDLNQAAINGIRAAGATsQYIFVEGNSYSGAWTWVSVNDNlkdlTDSE 661
                 *******************.****************8874.........489**************************999555444442222336789 PP

                 TTEEEEEEEETTTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTSSHHHHHHHHHHHHHHHHTTTEEEEEEESSS CS
   Cellulase 192 dnliysvHfYgpsdfaqtefgkdltdktnlaqrledaakylvekgipviigEfGgsnadgdlakeeaekwldylkekgiswiyWslnpk 280
                 d+++y++H+Y +sd ++t+    ++++t+ + r+e+a+++l+e+g+  i+gEf+g+ ++   ++e+ e +l+y+ ++  +w +  ++++
  KKY23025.1 662 DKIVYEMHQYLDSDGSGTSD--VCVNSTIGKARIESATNWLRENGKIGILGEFAGGANSV--CQEAIEGMLEYMGSNTDVWKGAMWWAA 746
                 ***************99999..9*******************************977777..*******************99999976 PP

>> Cyclin  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.0   0.0   2.4e-43   1.5e-39      29     161 .]     916    1046 ..     907    1046 .. 0.96

  Alignments for each domain:
  == domain 1  score: 136.0 bits;  conditional E-value: 2.4e-43
                  -----T.....................T--SS--SS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH..H-TT---STTTHHHHHHHHHHHHHHHH CS
      Cyclin   29 ksnlensqkqssshtkttfaqtpkessFatkavpaisigsylsrlqkfgesaplvllgtliYldrivkrcvsealvvtsanihRllivallvatKfl 125 
                  + ++e+  + ++++ ++ ++q ++ ++F++k +p+is ++yl rl+++++++++v+l++++Y++r++   v + l+vt +n+hRll++al+va+K+l
  KKY23025.1  916 AHQSEPVHIIGDNSAPLHIQQGAIARKFYSKKPPPISTKDYLLRLHRYCPMSTAVYLAASLYINRLAV--VDKLLSVTLRNVHRLLLAALRVAMKAL 1010
                  456788889999*******************************************************9..*************************** PP

                  -SS---HHHHHHHHTS-HHHHHHHHHHHHHHTTT-- CS
      Cyclin  126 vDlsysnekfakvggislkELnkLEidFlflvdFdl 161 
                  +Dl y +++fakvgg+s+ EL +LEi+F+ l  Fdl
  KKY23025.1 1011 EDLRYAHSRFAKVGGVSELELGRLEISFCYLTSFDL 1046
                  **********************************97 PP

>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1  12.2   6.6e-15   3.9e-11       2     149 ..     102     271 ..     101     273 .. 0.91
   2 !   53.8   6.9   3.3e-18     2e-14       3     147 ..     308     447 ..     306     451 .. 0.90

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 6.6e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT.....HHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTS CS
    Na_Ca_ex   2 lfvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltge.....vdlaignvlGsnifnlllviGlialigslkvd 95 
                 ++++f++ +++++++a++l  +  e+a   +  ++vlG++l  + +s+ E+i+ ++ +++ +     + +  +++lGs++ nlll++Gl++++g+  ++
  KKY23025.1 102 HVWIFAINYIAMVPCANLLGFAGQELA---RKLPKVLGIILEVTLGSVVEIILFVVLIVKENgdgrfIVVIQAAILGSILTNLLLCMGLCFFVGG-MRR 196
                 689************************...88899************************9555555788888**********************9.555 PP

                 SCECCHHHHHHHHHHHHHHHHHHHTCHHHHH......................HTEEHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  96 seslkldlgllllvallllllvlllllplfv......................pgrltvleglvllllYalylvls 149
                 +e+  +++ +  + + lll++ ++ll+p ++                       + +++ ++++ll++++ y++++
  KKY23025.1 197 EEQ-SFHDVIGEVGSGLLLMAGFALLIPSAFysalyttaenseeftietlsnsVTSISRGTSIILLVAFLTYTWFN 271
                 555.577769999999999999999999999999999************************************997 PP

  == domain 2  score: 53.8 bits;  conditional E-value: 3.3e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCH CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslkl 101
                 ++++++sl+l++++a flv+ +e i++  ++++ ++Gl+l++l+  + E++++i  a+ ++++ a+  +lG  i+  ll  +l+++ig+    ++ ++l
  KKY23025.1 308 ALAIAISLALVAAIAVFLVEEIEFIVTERHVPDNFMGLILVPLVEKAAEHLTAIDEAWDNQMNFALFHCLGPSIQTALLNAPLVVVIGW--GLGKPMDL 404
                 7899**********************99***********************************************************99..44445788 PP

                 HHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 102 dlgllllvallllllvlllllplfvpgrltvleglvllllYalylv 147
                 +++++++v+l+l++lv+  +l    +g+ ++leg++++++Ya++++
  KKY23025.1 405 NFEIFMVVLLVLSILVVGNFLR---DGKSNYLEGALCVFVYAIIAL 447
                 9988777777776666666644...5****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.48
# Mc/sec: 6842.66
//
Query:       KKY23026.1  [L=672]
Description: putative palmitoyltransferase akr1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-27   95.2   0.0    2.6e-13   50.4   0.1    3.4  3  Ank_2            Ankyrin repeats (3 copies)
    5.3e-22   77.6   1.2    2.3e-05   24.6   0.0    4.5  4  Ank_5            Ankyrin repeats (many copies)
    3.3e-21   74.7   0.3    1.1e-05   25.6   0.0    5.4  5  Ank              Ankyrin repeat
      3e-20   70.2   1.3    1.9e-06   27.7   0.0    5.8  5  Ank_3            Ankyrin repeat
    1.7e-19   69.9   0.9    3.2e-06   27.6   0.0    4.0  4  Ank_4            Ankyrin repeats (many copies)
    0.00049   20.2   3.5    0.00049   20.2   3.5    2.2  2  DHHC             DHHC palmitoyltransferase
  ------ inclusion threshold ------
        1.1    9.3  13.0        2.5    8.2  13.0    1.5  1  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   8.6e-15   2.2e-11       1      81 [.      52     144 ..      52     146 .. 0.81
   2 !   50.4   0.1     1e-16   2.6e-13       2      83 .]     121     212 ..     120     212 .. 0.86
   3 !   11.4   0.0   0.00014      0.37      25      57 ..     214     252 ..     211     276 .. 0.71

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 8.6e-15
       Ank_2   1 LhlAakngnlelvklLl..egadpn..k.ngktaLhyAakngnleivklLleh...ad....ndgrtpLhyAarsghleivklLlekgadinl 81 
                 ++++a+ g   l++ +    +++p+  + +g t+Lh+Aa+n++  ++k+L+e+   ++    ++  tp ++Aa+  h+ +v+lLl+ gad+ l
  KKY23026.1  52 IMQCARLGEVGLIRKMFdsGNYKPDyrDeEGITPLHWAAINNQYATCKFLVEQgadVNakggESVATPAMWAAQRCHYYVVNLLLKMGADPLL 144
                 58999977667999999854477776547*************9999******885644644444559******99**********77**9865 PP

  == domain 2  score: 50.4 bits;  conditional E-value: 1e-16
       Ank_2   2 hlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 ++Aa+  ++++v+lLl  gadp   + +g ++Lh+A++ gn  ++ lLl +      +d + +t L++Aa +g++ +v+lLl  ga++n++d
  KKY23026.1 121 MWAAQRCHYYVVNLLLkMGADPLlvDgQGYNILHLATIDGNAFLLVLLLHQdiavdvVDPQQHTSLMWAAYKGYPACVDLLLRWGANVNARD 212
                 89***87788******99999877657*************755556666436886777799*********************88*****997 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.00014
       Ank_2  25 ngktaLhyAakngnleivklLleh.....ad.ndgrtpL 57 
                 +g+t+Lh+A  +g+ ++++ ++e+     a+ ndg+ p 
  KKY23026.1 214 KGLTPLHWALVKGSQQCIQKIIEFggdrfAEtNDGKDPH 252
                 578888888888888888888886655554466777665 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.1e-06    0.0028       9      46 ..      75     112 ..      74     115 .. 0.92
   2 !   23.3   0.1   2.2e-08   5.6e-05       1      56 []     101     156 ..     101     156 .. 0.97
   3 !   14.8   0.0   1.1e-05     0.028       1      36 [.     168     202 ..     167     206 .. 0.82
   4 !   24.6   0.0   8.9e-09   2.3e-05       5      49 ..     205     248 ..     201     251 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.1e-06
       Ank_5   9 vnrldgggntpLhvAakygaadvvrlLlargadlnltd 46 
                 ++++d++g tpLh+Aa ++    +++L++ gad n++ 
  KKY23026.1  75 PDYRDEEGITPLHWAAINNQYATCKFLVEQGADVNAKG 112
                 57899******************************985 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 2.2e-08
       Ank_5   1 Llehgpadvnrldgggn.tpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 L+e g advn++ g+++ tp ++Aa + +  vv+lLl++gad+ l d++G++ l+lA
  KKY23026.1 101 LVEQG-ADVNAKGGESVaTPAMWAAQRCHYYVVNLLLKMGADPLLVDGQGYNILHLA 156
                 78899.**********************************************99998 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 1.1e-05
       Ank_5   1 Llehg.padvnrldgggntpLhvAakygaadvvrlLl 36 
                 Ll+ +  +dv +++++  t L++Aa++g++ +v lLl
  KKY23026.1 168 LLHQDiAVDVVDPQQH--TSLMWAAYKGYPACVDLLL 202
                 5666666677777777..*****************99 PP

  == domain 4  score: 24.6 bits;  conditional E-value: 8.9e-09
       Ank_5   5 gpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG 49 
                 g a+vn++d +g tpLh+A  +g+++++++++++g d+++ +++G
  KKY23026.1 205 G-ANVNARDDKGLTPLHWALVKGSQQCIQKIIEFGGDRFAETNDG 248
                 4.9***************************************999 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   4.3e-09   1.1e-05       2      30 ..      82     111 ..      81     112 .. 0.89
   2 !    9.1   0.0   0.00075       1.9       4      31 ..     118     146 ..     117     146 .. 0.88
   3 ?    1.4   0.1      0.21   5.3e+02       2      23 ..     149     170 ..     148     180 .. 0.61
   4 !   20.7   0.0   1.6e-07    0.0004       4      32 .]     184     213 ..     181     213 .. 0.90
   5 !   10.8   0.0   0.00022      0.56       2      24 ..     215     238 ..     214     247 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 4.3e-09
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnal 30 
                 G TPLH+Aa n++   +k+L+ +GA++na+
  KKY23026.1  82 GITPLHWAAINNQYATCKFLVeQGADVNAK 111
                 99*******666688******99*****97 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00075
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnald 31 
                 TP ++Aa++ +  ++ lLL  GA++ ++d
  KKY23026.1 118 TPAMWAAQRCHYYVVNLLLkMGADPLLVD 146
                 889****889999******66***98876 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.21
                 SBBHHHHHHHHTT.HHHHHHHHT CS
         Ank   2 GnTPLHlAatngk.kriiklLLh 23 
                 G+  LHlA  +++ +  + lLLh
  KKY23026.1 149 GYNILHLAT-IDGnAFLLVLLLH 170
                 8899***65.5553445555664 PP

  == domain 4  score: 20.7 bits;  conditional E-value: 1.6e-07
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 T L++Aa+ g + ++ lLL  GAn+na+d+
  KKY23026.1 184 TSLMWAAYKGYPACVDLLLrWGANVNARDD 213
                 88*****9999********55*******96 PP

  == domain 5  score: 10.8 bits;  conditional E-value: 0.00022
                 SBBHHHHHHHHTTHHHHHHHH.TT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hG 24 
                 G TPLH+A   g+ ++i+ ++  G
  KKY23026.1 215 GLTPLHWALVKGSQQCIQKIIeFG 238
                 89*****999999****9888644 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   7.4e-10   1.9e-06       1      31 []      81     110 ..      81     110 .. 0.95
   2 !    7.8   0.1    0.0023         6       4      29 ..     118     142 ..     117     144 .. 0.92
   3 ?    4.5   0.1     0.028        71       2      29 ..     149     175 ..     148     177 .. 0.75
   4 !   15.6   0.0   6.7e-06     0.017       3      31 .]     183     210 ..     181     210 .. 0.94
   5 !    8.4   0.0    0.0015       3.9       2      28 ..     215     240 ..     214     241 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 7.4e-10
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvna 31 
                 +G tpLh+Aa ++ ++ +kfL+e  gadvna
  KKY23026.1  81 EGITPLHWAAINNQYATCKFLVE-QGADVNA 110
                 599************99******.9****96 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0023
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadv 29 
                 tp ++Aa  +++ +v +Ll+ +gad+
  KKY23026.1 118 TPAMWAAQRCHYYVVNLLLK-MGADP 142
                 9***********88999999.****8 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.028
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G+++LhlA   gn   +  Ll +  + v
  KKY23026.1 149 GYNILHLATIDGNAF-LLVLLLHQDIAV 175
                 899***********8.555554467666 PP

  == domain 4  score: 15.6 bits;  conditional E-value: 6.7e-06
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadvna 31 
                  t L++Aa  g ++ v++Ll+ +ga+vna
  KKY23026.1 183 HTSLMWAAYKGYPACVDLLLR-WGANVNA 210
                 699**********99******.*****96 PP

  == domain 5  score: 8.4 bits;  conditional E-value: 0.0015
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgad 28 
                 G tpLh+A+  g+   ++ ++e +g d
  KKY23026.1 215 GLTPLHWALVKGSQQCIQKIIE-FGGD 240
                 99**********9989999999.7876 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     1e-06    0.0026      11      55 .]      58     102 ..      52     102 .. 0.80
   2 !   19.9   0.0   3.2e-07   0.00082       3      30 ..      84     111 ..      82     117 .. 0.91
   3 !   18.0   0.1   1.2e-06    0.0032       3      47 ..     118     161 ..     116     170 .. 0.89
   4 !   27.6   0.0   1.2e-09   3.2e-06       2      52 ..     183     232 ..     182     235 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1e-06
       Ank_4  11 sgrlelvrlLlekg.adinaqdnrsGetalhiAakrgnveilklLl 55 
                  g + l+r  +++g   ++++ +++G t+lh Aa ++++   k+L+
  KKY23026.1  58 LGEVGLIRKMFDSGnYKPDYR-DEEGITPLHWAAINNQYATCKFLV 102
                 5666677777776435688**.**********************96 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 3.2e-07
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaq 30 
                 t+Lh+aai +++ ++++L+e+gad+na 
  KKY23026.1  84 TPLHWAAINNQYATCKFLVEQGADVNAK 111
                 89************************97 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 1.2e-06
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgn 47 
                 t+  +aa+ +++ +v lLl  gad+  + +++G + lh A   gn
  KKY23026.1 118 TPAMWAAQRCHYYVVNLLLKMGADPLLV-DGQGYNILHLATIDGN 161
                 56679***********************.**********976655 PP

  == domain 4  score: 27.6 bits;  conditional E-value: 1.2e-09
       Ank_4   2 ltaLhyaaisgrlelvrlLlek.gadinaqdnrsGetalhiAakrgnveilk 52 
                 +t L +aa++g   +v+lLl + ga++na+ ++ G+t+lh A+ +g+ ++++
  KKY23026.1 183 HTSLMWAAYKGYPACVDLLL-RwGANVNAR-DDKGLTPLHWALVKGSQQCIQ 232
                 57899***************.77*******.999********9888777766 PP

>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.6       2.2   5.6e+03     100     120 ..     301     321 ..     285     344 .. 0.60
   2 !   20.2   3.5   1.9e-07   0.00049      54     133 ..     385     511 ..     379     512 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.2
        DHHC 100 lvlsllfllllgllllfhlyl 120
                 +++ ++ l+l+++++ +++++
  KKY23026.1 301 FFYPFIPLFLIISIISYNVIY 321
                 333333333333333333333 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1.9e-07
        DHHC  54 fllylllllilalvlllialvklveeekkseflavtllkk...............................................llsilllvlsll 105
                   ++ ll++i++ +l+++++v+++e+  +   l+ ++ +                                                +++ +l+ +s+l
  KKY23026.1 385 NTFMNLLFAIIYGLLTFFYFVSMMEDPGFVPRLNSRNKERdtieelfslwkfdeenfciqyieqlprisnpqctllsdevcnlykrdTWTWILAGWSCL 483
                 445555555555555555555555555554444333333355555555699999999999999999999999999999********************* PP

        DHHC 106 fllllgllllfhlylilrnlTtieamkk 133
                  l+++++ll++++++ilr++Tt e+m++
  KKY23026.1 484 QLVWVSMLLMVQTVQILRGQTTLENMRN 511
                 *************************986 PP

>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  13.0   0.00096       2.5      45     139 ..     301     406 ..     294     409 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00096
  Polysacc_synt_C  45 lnllliplfgi..........vGaaiatvlallvvavlnlyalrrllgikl.ellrrllkpllaalvmgivvylllllllgllllaal.allla 126
                      + +++iplf i          +G+ ia ++a ++ + l+ + l    +++  +    l   ++a+l+ +++  +++++l+++++ +++ +ll+a
       KKY23026.1 301 FFYPFIPLFLIisiisynviyIGIPIAFAVAWALQLGLQRISLLGPGKFRNlHHTPYLAGWFAASLFFVGA-RWVYWILPSTFTTNTFmNLLFA 393
                      668888888777778888888******************************76566666767777777777.66999999999999888***** PP

  Polysacc_synt_C 127 vlvgalvYlllll 139
                      ++ g l +++++ 
       KKY23026.1 394 IIYGLLTFFYFVS 406
                      ********99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 4366.70
//
Query:       KKY23027.1  [L=451]
Description: putative c6 finger domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 2853.27
//
Query:       KKY23028.1  [L=445]
Description: putative maleylacetate reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-46  158.3   0.0    3.6e-46  157.6   0.0    1.2  1  Fe-ADH    Iron-containing alcohol dehydrogenase
     0.0012   18.6   0.0     0.0022   17.8   0.0    1.3  1  Fe-ADH_2  Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.6   0.0   4.1e-50   3.6e-46      18     348 ..      38     404 ..      23     411 .. 0.84

  Alignments for each domain:
  == domain 1  score: 157.6 bits;  conditional E-value: 4.1e-50
                 HTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT........--EEEEEESHHHHHHHHHHHHHTT.... CS
      Fe-ADH  18 lkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalaree.......gadvviavGGGsviDtAKaialllanpev 109
                 l    ++ra+i+t++++++k++l++ v+e l+ +  +  +f++++++ +++ev+ea++++ ++        +d+vi+vGGGs+i +AK+i+++      
  KKY23028.1  38 LPTT-TSRAFIITGESLYTKTPLISFVEEILSPERHAG-TFSKIKQHVPIAEVNEAVSVIVQSqnsdespAIDTVISVGGGSPICAAKVISHIHW---- 130
                 4344.48************************6555555.5*******************9888666666669*********************99.... PP

                 ..............--EEEEESS-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHHHHHHHHHHH.HT---TTSS CS
      Fe-ADH 110 edylgegkakkkkalpliaiPTtaGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatglDalahalEayvs.kkanplsda 207
                    +++g     k l +i+iPTt  +++e+t  a    + +g+k+++ +p+l+P+ +++Dp +   +P+ ++ +tg+ al ha+Ea     + +  s+ 
  KKY23028.1 131 ---VQTG-----KFLSHITIPTTL-SAAECTTSAGYK-DTDGTKKAVNHPSLTPEHVLYDPYFGSYTPPTLFLSTGIRALDHAVEAQYHpLTPHFPSKI 219
                 ...3344.....44**********.889*********.6777***********************************************6677889*** PP

                 B--HHHHHHHHHHHHHHHHHHHH...............HHHHHHHHHHHHHHH..HH...HSS---HHHHHHHHHHC.CGGGGGS-HHHHHHHHH.... CS
      Fe-ADH 208 laleairliaknleravadgedl...............eareqmllastlagl..af...snaglgavHalahalgalfgiphglanaillpavlrfna 286
                 lale+i l++++l+  +++ +                 +  + + las+l+    ++   +++ lg++H l++a+g+ ++iphg++ +++l   +r   
  KKY23028.1 220 LALESISLLFTHLPIYHEHHHRQpqpqpphqipsnsltQTITTLFLASHLSLSylGIpppTYGPLGLSHVLGYAIGSPYNIPHGITSCMTLSPTIRLKT 318
                 ***************9999763347899******99999999999999995542244444789999*****************************9999 PP

                 ..........HHHHHHT..........................T--HHHHHHHHHHHHHTT---SHHH.HT-TT-HHHHHHHHHT- CS
      Fe-ADH 287 ....eaaperlaqlaralgge...................sdeeaaeeliealrellkelglptsLse.lgvdeedldklaeaalk 348
                     +++ + +a++a+ + ++                    + ++ae++  a++ l+++lgl++sLs+ +++ ++++d ++e ++ 
  KKY23028.1 319 rigdPETLKNIARIAKYIPEThdtnnqatataattipstdLALAQAEKVSSAIESLIESLGLQRSLSKdYNLGKDQVDVIVERVVG 404
                 8887444455555555554446666666666666777768778999********************75499*********999876 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.4e-07    0.0022      19     156 ..      42     194 ..      26     203 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.4e-07
    Fe-ADH_2  19 lkkvllvaden..tkkaagekveeslkeagikvevveeveeeadleeveklveal.......reketdlvvavGgGtiiDiakyvsaklnv......py 102
                  ++++++++e   tk  + + vee l+ +  ++ ++++ +++  + ev++ v+++       ++  +d v++vGgG+ i +ak++s+   v      + 
  KKY23028.1  42 TSRAFIITGESlyTKTPLISFVEEILSPER-HAGTFSKIKQHVPIAEVNEAVSVIvqsqnsdESPAIDTVISVGGGSPICAAKVISHIHWVqtgkflSH 139
                 567778888874445557888888887775.444555566666555555555555444544455789*******************9654311112257 PP

    Fe-ADH_2 103 vsvpTaaSvDGfaspgaslvvdgkkrtv.akaaaPlaviaDldvlaeAPrrllas 156
                 + +pT++S    + +     +dg k+ v ++  +P  v+ D  + +  P  l +s
  KKY23028.1 140 ITIPTTLSAAECTTSAGYKDTDGTKKAVnHPSLTPEHVLYDPYFGSYTPPTLFLS 194
                 99******99988888888899999999999999*99999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2897.63
//
Query:       KKY23029.1  [L=655]
Description: putative rna exonuclease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.3   3.6       0.22   11.3   3.6    1.5  1  BTK       BTK motif


Domain annotation for each model (and alignments):
>> BTK  BTK motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   3.6   1.3e-05      0.22       1      29 [.     344     372 ..     344     373 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.3e-05
         BTK   1 kYHPgafvggkWlCCkqtdktapGCtpvt 29 
                 +YHPg    g+++CC        GCtp +
  KKY23029.1 344 HYHPGRIYRGMYSCCDGHRVYSKGCTPAE 372
                 6****9999*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1117  (0.0623013); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 4151.72
//
Query:       KKY23030.1  [L=339]
Description: putative peroxidase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-06   25.8   0.0     0.0017   17.0   0.0    2.0  2  AATase    Alcohol acetyltransferase


Domain annotation for each model (and alignments):
>> AATase  Alcohol acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0001       1.8     226     308 ..      53     131 ..       5     155 .. 0.75
   2 !   17.0   0.0   9.6e-08    0.0017     373     483 ..     205     318 ..     192     333 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0001
      AATase 226 llalpklllvsfiasklnfkkseekpltkehsavqksnkshq..iilkispeevkkirakikknvhgkatlTpflqavffvalyk 308
                 ll+l++l+l     + l+f+ s+ +    ++++ q++++  +  + l+++ + v k  + ++++   ++t+T+ ++  + ++l  
  KKY23030.1  53 LLSLMRLFLRR---KDLPFSDSTYNDCDLTYDPNQRKKAVITavETLRLDANTVVKCLHACRQH---NTTITALIHTLIKITLAA 131
                 33344444443...77888887666677788898888876652268******************...********9988887765 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 9.6e-08
      AATase 373 welveeyhkrlseslsngkelkglgtlildlllkyvnidkllkkkilktkrstaevsNlGlfsq.eeeskykvkdliFsq..aagslknafslnvistn 468
                 w l++ y++ ls+ ++ gk +    + i+ +  +       +   i ++ +  ++vsNlG f    ++s++++ d+ Fs   ++g +   +++n+ s++
  KKY23030.1 205 WLLAHRYYEFLSQNVQHGKRILRDHKSINLIGPDDEHYVAQMVPAIGQQLKQAFLVSNLGAFDPaSSASPWTISDVEFSAgaTKGGIGTDVVFNMASVK 303
                 56666666666666666666555555554444444445555666788888**********99988999**********85227788************* PP

      AATase 469 sgGlnlslsvvedll 483
                  g + ++l++ + +l
  KKY23030.1 304 GGDCVINLTYEKGVL 318
                 ********9977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.32s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2217.19
//
Query:       KKY23031.1  [L=191]
Description: putative zn 2cys6 transcription [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1240.78
//
Query:       KKY23032.1  [L=217]
Description: putative gmp synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-07   31.7   0.0    1.6e-07   31.3   0.0    1.1  1  GATase    Glutamine amidotransferase class-I
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.016   14.8   0.0    1.3  1  GATase_3  CobB/CobQ-like glutamine amidotransferase domain


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   1.8e-11   1.6e-07      38     174 ..      14     164 ..       2     170 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 1.8e-11
                 H.THHSTSEEEEEEESSCTT.....TTTHHHHHHHHCT..STS-EEEETHHHHHHHHHTTT...EEEEEECEEEEEEEEEEEETTT......CGGTTTT CS
      GATase  38 e.llknpdgilvsgGpgspg.....vegkieaikeare..nkiPiLGICLGmQllaiefgr...kvvkekekehhggtmrlgddet......allyglk 119
                    l+++d+i+vsg p s +     ++     i+++ +   +i i G C+G+Q++++++ +    vv++++ +   g ++++  ++      +++   +
  KKY23032.1  14 PpSLETVDAIIVSGSPYSTYqdlkwIQRLELYIRYIYGehPNIKIYGSCFGHQIICQALFGadgAVVEKNNAGWELGVHEIKLSDKfaarfqDVFM--S 110
                 345889******************99999999****99777899*************987767766666656666667777776668866533333..3 PP

                 SEEEEEEEEEEEEESG.CHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTST CS
      GATase 120 nevierhrHryevnpk.elepaglevtakseddeelmeiiekknpfvgvQFHPEst 174
                  +++  + H++ v    e +p+++  ++++   + + +i +  + +  +Q HPE+ 
  KKY23032.1 111 TSMHLQFLHGDHVILPsENLPNDVYQIGTTPL-CPVQGIYQPCR-LLTFQGHPEFD 164
                 6889999999999988899*******9***55.68888888776.9********95 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.8e-06     0.016      36      98 ..      16      78 ..       6     118 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-06
    GATase_3 36 slgedadlvilpGg.kdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGeeiedpegv 98
                sl e +d++i+ G+ ++t qdl++ ++ +l          +++++g C G q+ ++ +  ++g 
  KKY23032.1 16 SL-ETVDAIIVSGSpYSTYQDLKWIQRLELYIRYIYGEHPNIKIYGSCFGHQIICQALFGADGA 78
                56.45********988********99855554444444569*****************887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1694.73
//
Query:       KKY23033.1  [L=198]
Description: putative aminotransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.076   13.4   0.0       0.12   12.7   0.0    1.3  1  MutS_IV   MutS family domain IV


Domain annotation for each model (and alignments):
>> MutS_IV  MutS family domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.7e-06      0.12       5      50 ..      33      78 ..      31      93 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.7e-06
                HHHHHHHHHHHHHHHHHHHHCCCCCCCT-TTBEECCCSSSEEEEEE CS
     MutS_IV  5 eLdelrdrleelekeleeleekereklgikslkveynkvlGyylev 50
                +L  lr +l e e+ele+ +e+++   + k+  ++y k + y++ v
  KKY23033.1 33 DLGFLRTALIESEEELERHLEQVEDVPRFKNPTCGYEKIYKYVIYV 78
                68899**************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.31s 00:00:00.82 Elapsed: 00:00:00.50
# Mc/sec: 1195.41
//
Query:       KKY23034.1  [L=464]
Description: putative succinate-semialdehyde dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     4e-147  490.5   0.0   4.5e-147  490.3   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  490.3   0.0  2.5e-151  4.5e-147      10     461 ..       2     455 ..       1     456 [. 0.97

  Alignments for each domain:
  == domain 1  score: 490.3 bits;  conditional E-value: 2.5e-151
                 EEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHS CS
      Aldedh  10 evinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelaekle 108
                 +  +P tge++a++p+++a+dv aav++A+eaf +++k++++  a++L k+ +l++e+k++la+++t etGkpla+++ e+++a++ + ++ ++ae+++
  KKY23034.1   2 DISDPGTGEIWASAPDSDAKDVAAAVQSANEAFITYRKISPRVHAQCLLKWSTLIREHKDDLAKIITYETGKPLADSKFEIDYAVNSAWWFSGEAERIQ 100
                 6779*********************************************************************************************** PP

                 EEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SS...TCCHHHHHHH- CS
      Aldedh 109 gevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgs...gsevgealveh 203
                 g+   s  +gk+ l+ ++P+Gvv+a++PWN P++++++k+ +alaaG+t+v+KP++etpls+l l++l+eeag+ kgvlnv+t+s     +++eal+++
  KKY23034.1 101 GTLYDSaVPGKKVLTIKQPIGVVAALVPWNLPVAMVVRKAGAALAAGCTMVIKPSPETPLSVLSLMQLAEEAGFSKGVLNVLTTSwsnTPSLSEALCRQ 199
                 ***99955**************************************************************************8874447789******* PP

                 TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-TT CS
      Aldedh 204 pevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgdpl 302
                 p+++kv+ftGst+vg+ +ak +a+ lk++tlElGG+ p+iv++daDl++a++a++   ++naGQ+Ci+a+r+lvq ++yd+f   l+e+ +kl  g++ 
  KKY23034.1 200 PHIKKVTFTGSTRVGKLLAKICADGLKKLTLELGGNCPFIVFDDADLNQAADALMGLKWRNAGQTCITANRVLVQAGVYDRFAIILKEKSSKLISGHGS 298
                 ***********************9**************************************************************************9 PP

                 STT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEEEE CS
      Aldedh 303 dedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaagv 401
                   ++++GP++++++l++  ++v++ake+ga+lllGg  ++  +++g+f+ePt++ n +++mri +eE F+P+l++++f+ e eai+ aN+t++GLa++v
  KKY23034.1 299 IASSTLGPVTTPQSLDRALAQVKDAKEHGATLLLGG--RRVPDQHGFFLEPTIIINANKEMRITEEESFAPILALYRFEAESEAIRTANETPMGLASYV 395
                 99**********************************..56789******************************************************** PP

                 E-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSH.HHHHHHTEEEEE CS
      Aldedh 402 ftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGregg.kegleeytevkt 461
                 ftk+l+ra r+ ++le G +++N+s+++ +e  pfgG k+Sg+G+e+g   ++eey+ +k+
  KKY23034.1 396 FTKNLDRAWRLLDELESGIIGVNTSAVSGTEI-PFGGLKESGYGKEAGkDVAVEEYLITKA 455
                 *************************9999999.***************6678999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 3016.07
//
Query:       KKY23035.1  [L=552]
Description: putative amino acid permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.8e-119  399.5  42.1   2.1e-119  399.2  42.1    1.0  1  AA_permease    Amino acid permease
    3.5e-29  101.9  46.0    4.5e-29  101.5  46.0    1.2  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  399.2  42.1  2.4e-123  2.1e-119       1     473 [.      49     498 ..      49     501 .. 0.98

  Alignments for each domain:
  == domain 1  score: 399.2 bits;  conditional E-value: 2.4e-123
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ialggviG g f ++g++l+  Gp+gal++y+++gv +flv++slge+at++p++g+f+ +a rf++p+l+f+ G+ny+++w t la+e+++a+
   KKY23035.1  49 HLQMIALGGVIGPGTFYATGYALRYSGPVGALIGYIIIGVDVFLVTQSLGEMATLFPSTGSFNEFAGRFVDPALSFALGWNYWYMWGTILANEYNGAA 146
                  99************************************************************************************************ PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeeg 196
                   ++++w  +++lp  ++++++ ++++++ +l+gv vyge+ef+la++k++  + +++v i l +g+ + +  gfr++ ++g      + +g       
   KKY23035.1 147 LILSYW--TDKLP-SYAWILICWIFFMGTSLLGVLVYGEMEFWLASFKFLVTLLLYLVAILLDTGAIGGDYIGFRYWVHPGP-----FANG------- 229
                  ******..*****.*****************************************************99999**********.....****....... PP

  AA_permease 197 afknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.aspfvifikesgvsvlaplin 293
                   + +f  v+v +++ ++G+e+vai++gE+++P+k+iPka +q+++ri+i+Yv+++++ gl+vp ++  ll+++ +  +spf ++++++g++++++lin
   KKY23035.1 230 -INGFGKVLVLAAVMYSGTEAVAITGGESRNPKKDIPKALKQTFWRILIVYVGMVFFTGLIVPSDSEALLSATSKSaSSPFTVALNKAGWAGAGNLIN 326
                  .*********************************************************************9887767********************* PP

  AA_permease 294 aviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfR 391
                  a+i +++lss+ns++y+asR +++ ak+g aPk+++k + +gvP+ ai+++ +++l++ll+ s n++  +vf++ll is+++++i w +i l+++r+R
   KKY23035.1 327 AIIVITLLSSINSAIYIASRCIFAQAKSGRAPKIFAKTTENGVPIYAIVFTNLFGLISLLNISENAG--NVFTYLLDISGAAAFIAWAFIGLTHVRMR 422
                  ***********************************************************99999999..***************************** PP

  AA_permease 392 kalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknk 473
                   a+k+q++ +++l+++++++p+++++ + a+i+++li ++  +l        ++   f+++yl +++f+i++vg+kl+ k+k
   KKY23035.1 423 AAMKAQNMPVSSLPYRSWGYPYIAWILFGANIFLVLISGYGTLLN------PFDLKGFIFSYLVIPVFIILYVGWKLYHKTK 498
                  *****************************************9999......7999**********************99976 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5  46.0     5e-33   4.5e-29       8     403 ..      52     461 ..      45     493 .. 0.81

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 5e-33
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaas 101
                    ++++g vig g f ++  ++ + gp+ +l++ i++++ ++ v   + E+++++p+ g    ++ ++  + + f  +w +w+ +   l +  +++a+
     KKY23035.1  52 MIALGGVIGPGTFYATgyALRYSGPVGALIGYIIIGVDVFLVTQSLGEMATLFPSTGSFNEFAGRFVDPALSFALGWNYWYMWGTIL-ANEYNGAA 146
                    7999*****7777776687777999877777777777777899999************************************99877.89999999 PP

  AA_permease_2 102 yllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl...stetdt....ffpngwpgv 190
                     +l+ +  +      ++y  + ++ i+++  +++g+  ++ + ++l+ +k+l++l++ +++ l+  ++ g + +        +     f+ng +g+
     KKY23035.1 147 LILSYWTDK-----LPSYAWILICWIFFMGTSLLGVLVYGEMEFWLASFKFLVTLLLYLVAILLDTGAIGGDYIgfrY----WvhpgPFANGINGF 233
                    999988655.....4677777899***************************877665554444333222222224442....13333788899999 PP

  AA_permease_2 191 llgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddei....anlsnlgsvaalffeavggkvvaiivvili 280
                      +l  ++  ++G e++a    e  ++kkd+pka+   +  +l++y+++ ++   +vp d+     a++++  s++++ ++++g   +  +++++i
     KKY23035.1 234 GKVLVLAAVMYSGTEAVAITGGEsrNPKKDIPKALKQTFWRILIVYVGMVFFTGLIVPSDSEallsATSKSASSPFTVALNKAGWAGAGNLINAII 329
                    999999*****************667779********************88888899998886676444445568********999999******* PP

  AA_permease_2 281 alsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas.saaynfllsvsslgliisyllliigalilrkk 375
                    ++ ll +in+a++++sr ++a a+ g  P+ fak+ ++g pi+ai++t+++ li ll ++  + ++ +++ll++s  +++i ++++ ++ +  r  
     KKY23035.1 330 VITLLSSINSAIYIASRCIFAQAKSGRAPKIFAKTTENGVPIYAIVFTNLFGLISLLNISE-NaGNVFTYLLDISGAAAFIAWAFIGLTHVRMRAA 424
                    ****************************************************776655554.2599****************************99 PP

  AA_permease_2 376 rphlkr.........pgkilvaiigalfllfllvalf 403
                    ++ ++          +g++ +a+i +  ++fl+ +  
     KKY23035.1 425 MKAQNMpvsslpyrsWGYPYIAWILFGANIFLVLISG 461
                    9988444567766667767788888888888886544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3637.33
//
Query:       KKY23036.1  [L=148]
Description: putative fungal specific transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1053.37
//
Query:       KKY23037.1  [L=978]
Description: putative mit domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-14   51.6   0.6      2e-13   50.2   0.6    1.8  1  MIT       MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.6   1.1e-17     2e-13       1      64 [.       2      66 ..       2      67 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 1.1e-17
         MIT  1 ldkAlelvkkAveeDnagnyeeAlelYkealelLlqalke.kneerrellrekieeYleRaeeLk 64
                l+kAl+++++Av +Dna+n+e A+e+Y++a++lL q++   +  e++ +l++  ++Y++R++eL+
  KKY23037.1  2 LSKALQKANTAVLLDNAQNFEGAMEAYEDACRLLEQVMFKsTGVEDKRKLQSIRTTYINRIKELQ 66
                79************************************954777*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (978 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.21s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 7393.23
//
Query:       KKY23038.1  [L=1602]
Description: putative 5-oxoprolinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.3e-224  745.1   0.0   4.4e-224  744.7   0.0    1.2  1  Hydantoinase_B  Hydantoinase B/oxoprolinase
   3.2e-102  341.7   1.6   3.6e-102  341.5   0.4    1.7  2  Hydantoinase_A  Hydantoinase/oxoprolinase
    1.8e-61  206.9   0.2    1.2e-59  201.0   0.0    2.5  2  Hydant_A_N      Hydantoinase/oxoprolinase N-terminal region
    2.9e-17   62.7   0.3    7.9e-17   61.3   0.1    1.8  2  Cupin_1         Cupin
    3.2e-05   23.6   0.0    8.4e-05   22.2   0.0    1.8  1  Cupin_2         Cupin domain
  ------ inclusion threshold ------
       0.17   12.3   1.5       0.53   10.7   0.1    2.6  2  Csm1_N          Csm1 N-terminal domain


Domain annotation for each model (and alignments):
>> Hydantoinase_B  Hydantoinase B/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  744.7   0.0  1.5e-227  4.4e-224       1     515 [.    1014    1569 ..    1014    1570 .. 0.98

  Alignments for each domain:
  == domain 1  score: 744.7 bits;  conditional E-value: 1.5e-227
  Hydantoinase_B    1 DpitlevfrnrlmsiaeemgrtlqrtaiSpnikerlDfscalfdadgelvaqaphipvhlgsmseavkavlekfegelkpGDvlltNdPyagg 93  
                      Dpi+l++f++r+m+iae+mgr+lq+t++S+n+kerlD+scalfdadg+lva+aph+pvhlgsms++++ +++ ++g+lk+GDv+++N+P  gg
      KKY23038.1 1014 DPIMLSIFAHRFMAIAEQMGRALQKTSVSTNVKERLDYSCALFDADGGLVANAPHLPVHLGSMSTCIQMQAKIWKGKLKKGDVIVSNHPEFGG 1106
                      9******************************************************************************************** PP

  Hydantoinase_B   94 tHlpDitvitPvfhegelvffvasraHhaDiGGitpGsmppdateifeEGlrippvklveege.leedvlelllanv.........Rtpednl 176 
                      tHlpDitvitP f+ ++++f+vasraHhaDiGGi pGsmpp+++e+++EG+ i++ klv+eg+ +e++++ell +++         R+++dnl
      KKY23038.1 1107 THLPDITVITPAFAGDKIIFYVASRAHHADIGGILPGSMPPHSRELYQEGASIKSEKLVSEGKfNEKRITELLYDEPaqypdcsgtRCLADNL 1199
                      *************9999**********************************************99**************************** PP

  Hydantoinase_B  177 gDlkAqiaanqvgerrlkelieeyGldtveaamdeildnaeravraalaelpd....gtyeaedylddgipikvtvtidgde..atvDftgts 263 
                      +DlkAqiaanq+g++++ +lie+yG+ tv+ +m++i++nae +vr++l+e+++    + ++a dy+ddg+pi++++tidgd+  a +Dftgt+
      KKY23038.1 1200 NDLKAQIAANQKGINLISTLIEDYGEPTVQFYMKNIQNNAELSVRNLLKEVSKrfegKPLQAIDYMDDGSPIQLKITIDGDKgeAAFDFTGTG 1292
                      ****************************************************999987799******************************** PP

  Hydantoinase_B  264 pqvkgniNaplavtlsaviyvlrclvdediplNeGclrpievklpegsllnpsepaavvggnvetsqrvvdvvlkalaqalpervaAasqgtm 356 
                      p+v+gniNap+avt+sa+iy+lrcl++ediplN+Gcl+p++vk+p++s+l+ps+ aavvggnv+tsqrv+dv++++++      ++Aasqg++
      KKY23038.1 1293 PEVYGNINAPEAVTYSAIIYCLRCLISEDIPLNQGCLKPVDVKIPKKSFLSPSDGAAVVGGNVLTSQRVTDVIFRCFE------ACAASQGDC 1379
                      ******************************************************************************......********* PP

  Hydantoinase_B  357 nnltfggvderg....geffgyyetiagGaGArpgkdGasavhvhmtntrntdvEilErryPvlverfelrpdsgGaGkyrGGdGvvreiefl 445 
                      nnltfg   +++    ++ fgyyetiagG+GA+p+++G+s+vh+hmtntr+td+Ei+ErryPv++++f+lrp++gGaG++rGGdGv+r+ief+
      KKY23038.1 1380 NNLTFGFGGNQTggtqTKGFGYYETIAGGSGAGPDWEGTSGVHTHMTNTRITDAEIFERRYPVILREFSLRPNTGGAGQHRGGDGVIRDIEFR 1472
                      *****855555578997788************************************************************************* PP

  Hydantoinase_B  446 epevtvsilserrvfapwGlaGGepGargrvvlnllvr...............................geeenlggkatvelkagdvlviet 507 
                       p v+vsilserrv++p+Gl+GGe++++gr   n++vr                                +e+nlg+k+t+++++g++++i+t
      KKY23038.1 1473 IP-VQVSILSERRVYRPYGLHGGEDAQPGR---NIWVRkvqkgpqdtsaastsstssdkdaapaagrieYREINLGSKNTAAMQPGERIIINT 1561
                      *9.***************************...7777777788889999999999999*********************************** PP

  Hydantoinase_B  508 pGGGGyGd 515 
                      pGGGGyG+
      KKY23038.1 1562 PGGGGYGK 1569
                      *******7 PP

>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.4   4.1e+03      72      93 ..     242     263 ..     238     265 .. 0.75
   2 !  341.5   0.4  1.2e-105  3.6e-102       1     289 [.     488     795 ..     488     797 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.4
  Hydantoinase_A  72 tsklagekkvItfDmGGTstDv 93 
                     ++++++    I +D GGT tD+
      KKY23038.1 242 MGEYQERGIRIAIDRGGTFTDC 263
                     556666666799********97 PP

  == domain 2  score: 341.5 bits;  conditional E-value: 1.2e-105
  Hydantoinase_A   1 rtetavvnAylspilreylesvekslekrgak...........arlmvmqsdGglvsadearkkpvetilSGPaaGvvgaaat.sklagekkvIt 83 
                     r+++a+ +Ayl+p +r+y++++e+ +e    +           ar+ +mqsdGglv++d +++   ++ilSGPa+Gvvg+a t ++ ++  +vI+
      KKY23038.1 488 RATSACADAYLTPAIRKYISGFEAGFEGGLGTeavkrqkgsraARCEFMQSDGGLVDVDIFSGL--RAILSGPAGGVVGYALTsYDPKTGIPVIG 580
                     7899***********************977668999***************************9..*****************77778889**** PP

  Hydantoinase_A  84 fDmGGTstDvslikdgevevsleteiagvkvrlpaldirtvgagGgsilvvdeggklrvgpesagadpgpacyrkGgteltvTDanlvLGrlqpe 178
                     fDmGGTstDvs++ +g++e+++et++agv++++p+ldi+tv+agGgs+l ++++g + vgpesaga+pgpa+yrkGg +ltvTDanl+LGrl p+
      KKY23038.1 581 FDMGGTSTDVSRYGQGRYEHVFETTTAGVTIQSPQLDINTVAAGGGSRL-FFRNGLFVVGPESAGAHPGPAAYRKGG-PLTVTDANLFLGRLLPD 673
                     *************************************************.***************************.***************** PP

  Hydantoinase_A 179 dfls..gpdgdqkldvelarrafeelakelnlk.........veevAegilsvavenmanavrklsvergldpkeltlvvfGGaGaqhaaalaee 262
                     +f++  g+++d+ ld+e+ ++ feel+k++n++         v+evA+g++++a+e+m +++r+l++++g+d++++ l+ fGGaG+qha a+ae+
      KKY23038.1 674 FFPKifGKNEDEGLDEEASKKLFEELTKKINQEikgsrkemtVDEVAYGFIKIANETMTRPIRSLTEAKGHDTSKHRLATFGGAGGQHAVAIAES 768
                     *********************************************************************************************** PP

  Hydantoinase_A 263 lgvkkvivppyagvlsalGmalAdvre 289
                     lg+++++v++y++vlsa+GmalAdv  
      KKY23038.1 769 LGIRQILVHRYSSVLSAYGMALADVVD 795
                     ************************976 PP

>> Hydant_A_N  Hydantoinase/oxoprolinase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.0   0.0   3.9e-63   1.2e-59       1     178 []     251     469 ..     251     469 .. 0.98
   2 ?    3.3   0.2      0.02        60       2      19 ..     579     596 ..     578     617 .. 0.76

  Alignments for each domain:
  == domain 1  score: 201.0 bits;  conditional E-value: 3.9e-63
  Hydant_A_N   1 rigIDvGGTfTDavaldeke..eevavlKllst.....pdavaegirealeevleesipr.....tskidvvrmGTTvatNallerkgervaLittkgf 87 
                 ri+ID+GGTfTD+v   ++   e  +++Klls+     +da+ e ir++l++ ++++ipr     ts+i+++rmGTTvatNallerkge++a+++ kgf
  KKY23038.1 251 RIAIDRGGTFTDCVGNPGTGkmEDDVIIKLLSEdpsnyKDAPLECIRRLLSRFTGKEIPRgepldTSRIESIRMGTTVATNALLERKGEPIAMVVSKGF 349
                 79**************9887888899************************************************************************* PP

  Hydant_A_N  88 rdlleigrqnrpdlfelrikkplvlyeevvevdervead.............................gevlkpldeeevrealkalkaagvesiavvl 157
                 +d leig+q+rp++f+l i++p vly++vvevderv+++                             +++l++ +e+++re+l++l+++g++siav+l
  KKY23038.1 350 KDCLEIGNQSRPKIFDLAIRRPDVLYQKVVEVDERVTLEdyaedpertvtvleeskdpdlvkgqsseiVRILRRPEEAKIREQLQSLYDEGIHSIAVCL 448
                 **************************************99*********************************************************** PP

  Hydant_A_N 158 lhSylnpehElrvaeiareig 178
                 +hSy++p+hE  v+++a+eig
  KKY23038.1 449 MHSYTFPDHEALVGKVAKEIG 469
                 ******************986 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.02
  Hydant_A_N   2 igIDvGGTfTDavaldek 19 
                 ig D+GGT TD+  + ++
  KKY23038.1 579 IGFDMGGTSTDVSRYGQG 596
                 899********9776655 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.1   2.6e-20   7.9e-17      13     139 ..      70     191 ..      60     196 .. 0.90
   2 ?   -3.6   0.0       2.6   7.7e+03      80      90 ..    1088    1098 ..    1078    1099 .. 0.78

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 2.6e-20
                 TTEEEEEESTTTSTTTHSSTEEEEEEEE.TTEEEEEEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEEESSSSEEEEE CS
     Cupin_1  13 eggrvteansenlpglntlgisaarvdlepgglllPhyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqynsgdepavaiv 111
                 e g+v +an  ++p+  + g+++a+++l p ++l+Ph+h +a+  ++ + G+ +   ++++ng ++++ +l+ G + ++P+g +h ++n+g e+a  ++
  KKY23038.1  70 EPGSVCNANKATFPATTGQGMTMAMLNLGPCAMLPPHFHARAANYVVAISGTTL-TYMIEENGASVISTELTVGKMTIFPQGSIHTMVNIGCENAQLLS 167
                 5689999***********************************************.888888889*********************************** PP

                 EEESSSTT-EEHSCEHHHHHTSSBHHHH CS
     Cupin_1 112 vfdtnnpgnqsvlaalfsvlpaLdrevl 139
                 ++++ + g+ +++++lf     L+++++
  KKY23038.1 168 ALSSEDAGTMNLANGLFM----LPEDIV 191
                 **********99998654....455444 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.6
                  EEEEETTEEEE CS
     Cupin_1   80 hkklreGdvfv 90  
                  + kl++Gdv+v
  KKY23038.1 1088 KGKLKKGDVIV 1098
                  567******98 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.8e-08   8.4e-05       5      69 ..      97     167 ..      93     169 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.8e-08
                 EETTEEEEEECSSSEEEEEEEEESE.EEEEECTE.....EEEEETTEEEEE-TT-EEEEEE-SSS-EEEEE CS
     Cupin_2   5 lppGesapshrHpgedeffyVleGe.geltvdge.....eveleaGdsvyfpagtpHrfrNtgdeparllv 69 
                 l p ++ p+h H ++  +++ ++G+ +++ ++++      +el+ G + +fp g  H+++N g e a ll+
  KKY23038.1  97 LGPCAMLPPHFHARAANYVVAISGTtLTYMIEENgasviSTELTVGKMTIFPQGSIHTMVNIGCENAQLLS 167
                 55667889*******9*********99999998889*****************************999987 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00018      0.53      21      62 ..     789     831 ..     783     836 .. 0.83
   2 ?   -1.9   0.1       1.5   4.4e+03      16      28 ..    1237    1249 ..    1232    1253 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00018
      Csm1_N  21 lvsklvhENsvLsqkl.etkdqeiesLkeqlaeleekvkelee 62 
                 + + +v EN+v + ++ ++k++ +e+Lk +++ l++ + +  e
  KKY23038.1 789 ALADVVDENQVPESQVwDSKSETLEKLKSKMEDLKKSSTKRLE 831
                 67889******87665499***************998876655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.5
      Csm1_N   16 dsAdllvsklvhE 28  
                  ++A+l v +l++E
  KKY23038.1 1237 NNAELSVRNLLKE 1249
                  89********999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.44
# Mc/sec: 10903.73
//
Query:       KKY23039.1  [L=165]
Description: putative rna polymerase ii transcriptional [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-22   78.1   0.1    4.4e-22   77.5   0.1    1.3  1  PC4       Transcriptional Coactivator p15 (PC4)


Domain annotation for each model (and alignments):
>> PC4  Transcriptional Coactivator p15 (PC4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.1   2.5e-26   4.4e-22       1      51 [.      54     104 ..      54     105 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 2.5e-26
                 ECTTCCEEEEEEEETTEEEEEEEEEEECTTEEEEEEEEEEEEHHHHHHHHH CS
         PC4   1 welskkrrvtvrefkGktlvdIReyyekdgelkPgkKGIsLtleqweaLkk 51 
                 wel +krrvt+++f Gktlv+IReyyekdg+++PgkKG+++t+e ++aL++
  KKY23039.1  54 WELPSKRRVTITKFHGKTLVNIREYYEKDGKMLPGKKGVAMTMEVYAALID 104
                 8999*********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 1071.53
//
Query:       KKY23040.1  [L=202]
Description: putative iron sulfur cluster assembly protein 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-54  183.1   0.0      3e-54  182.6   0.0    1.2  1  NifU_N    NifU-like N terminal domain
  ------ inclusion threshold ------
      0.088   13.1   0.0       0.17   12.2   0.0    1.4  1  TSCPD     TSCPD domain


Domain annotation for each model (and alignments):
>> NifU_N  NifU-like N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.6   0.0   3.3e-58     3e-54       2     126 ..      46     169 ..      45     172 .. 0.98

  Alignments for each domain:
  == domain 1  score: 182.6 bits;  conditional E-value: 3.3e-58
                 SCHHHHHHHHSSSSBSS-TTSSS--EEEEEEETTTTEEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHCCCCHHHHHHHHTCS CS
      NifU_N   2 ysdkvldhyknPrnvGvleeedakvgvgevgapacGDavrLqikvdeetdriedakFktfGCgsaiAssslltelvkgktleealkitnkeiaeelggl 100
                 y++kvldhy+nPrnvG+++++da+vg+g vgapacGD+++Lqi+vd++++ i d+kFktfGCgsaiAsss+ltelv g+tleea +i+n+eia+el+ l
  KKY23040.1  46 YHEKVLDHYSNPRNVGSMSKTDADVGTGLVGAPACGDVMKLQIRVDKDSNTISDVKFKTFGCGSAIASSSYLTELVRGMTLEEAGRIRNTEIAKELC-L 143
                 9************************************************************************************************.* PP

                 CSSSCHCSCHHHHHHHHHHHHHHHHC CS
      NifU_N 101 pkeklhcsvlaedalkaavkkYkakk 126
                 p++klhcs+laeda+k a+++Y +k+
  KKY23040.1 144 PPVKLHCSMLAEDAIKSAISNYYTKN 169
                 **********************9998 PP

>> TSCPD  TSCPD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.9e-05      0.17       7      48 ..      80     129 ..      77     136 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.9e-05
       TSCPD   7 Cs..reieievd.dk.liknvkfvg.GCngnlkg...iskLvegmkveev 48 
                 C+  ++++i vd d  +i++vkf   GC + + +   +++Lv+gm+ ee+
  KKY23040.1  80 CGdvMKLQIRVDkDSnTISDVKFKTfGCGSAIASssyLTELVRGMTLEEA 129
                 6633444555554336******9644**77765523378999****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1442.86
//
Query:       KKY23182.1  [L=476]
Description: putative serine hydroxymethyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-203  675.6   0.0     2e-203  675.4   0.0    1.0  1  SHMT             Serine hydroxymethyltransferase
     0.0022   18.2   1.6     0.0069   16.6   0.1    2.1  2  DUF4142          Domain of unknown function (DUF4142)
  ------ inclusion threshold ------
      0.021   15.4   0.4         44    4.6   0.0    3.2  3  DUF2408          Protein of unknown function (DUF2408)
       0.11   11.8   0.0       0.25   10.6   0.0    1.6  2  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> SHMT  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  675.4   0.0  4.5e-207    2e-203       2     399 .]      24     422 ..      23     422 .. 1.00

  Alignments for each domain:
  == domain 1  score: 675.4 bits;  conditional E-value: 4.5e-207
                 HHHTHHHHHHHHHHHHHHHHSEE-STT-----HHHHHHHTSGGGG----EETTEESSST-HHHHHHHHHHHHHHHHHCT-STTTEEEE---SSHHHHHH CS
        SHMT   2 eesdpevaeiikkekerqkeeieliasenftskavlealGsvltnkyaeGyPGkryyGGcefvdeveelaqdrakelfkldpakwgvnvqplsGsqanl 100
                 +e+dpev  i++ke +rq+e+i liasenftskav++alGs ++nky+eGyPG+ryyGG++++de+e l+q+ra+++++ld +kwgvnvq+lsGs+anl
  KKY23182.1  24 TEVDPEVEAIMQKEIKRQRETIALIASENFTSKAVFDALGSPMSNKYSEGYPGARYYGGNQHIDEIELLCQARALKAYNLDSEKWGVNVQCLSGSPANL 122
                 689************************************************************************************************ PP

                 HHHHHHT-TT-EEEEESCTTTSTGGGT-BTSS-B-SHHHHHSEEEEE-B-TTTSSB-HHHHHHHHHHH--SEEEEE-SST-S---HHHHHHHHHHTT-E CS
        SHMT 101 avytallepgdrilgldladGGhlthGakveskkisassklfesveykvdketglidydelekkakefkPklivaGtsaysrlidyarlreiadevgay 199
                 +vy+a+++p+dr++gldl++GGhl+hG+++  +kisa+s++fe+++y+v+ +tglidyd++e +a+ ++Pk+iv+G say+rl+d+ar+r+iad+vgay
  KKY23182.1 123 QVYQAIMRPHDRLMGLDLPHGGHLSHGYQTPARKISAVSTYFETFPYRVNLDTGLIDYDTMEANAQMYRPKVIVGGPSAYCRLFDWARMRKIADSVGAY 221
                 *************************************************************************************************** PP

                 EEEE-GGGHHHHHTTSS--GCCTSSEEEEESSSTT-S-S-EEEEEC-SEEEEE.TTTEEEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHCTSHH CS
        SHMT 200 llvdmahiaGlvaagvipsPfeyadvvtttthktlrGprgglillrkgvksvd.ktgkevleelekkinsavfPglqGGPlnhviaakavalkealepe 297
                 l++d+ahi+Glv+agvipsPfeyad+vtttthk+lrGprg++i++rkgv+s + ktg++vl++le  in++vfPg+qGGP+nh+i+a+avalk+a +pe
  KKY23182.1 222 LMADIAHISGLVSAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRKGVRSTNaKTGQQVLYDLEGPINFSVFPGHQGGPHNHTITALAVALKQASSPE 320
                 *****************************************************9********************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTSSTTTT-SEEEEESHHHHHTT--HHHHHHHH CS
        SHMT 298 fkvyqkqvlknakalaealkekgyklvsgGtdnhlvlvdlrekgldGkraekvlekvnitankntvPgdksalvtsGlrlGtpaltsrgfkeedlekva 396
                 fk+y++qvlknak l+++lk+ g++lv++Gtd+h+vl+dlr+k ldG+r+e+vle+vni++nkn++Pgdksal++ G+r+G+pa+t+rg++e+d+ +va
  KKY23182.1 321 FKQYASQVLKNAKSLENELKKLGHRLVADGTDTHMVLLDLRPKSLDGARVEAVLEQVNISCNKNSIPGDKSALTPCGIRIGAPAMTTRGMSEQDFARVA 419
                 *************************************************************************************************** PP

                 HHH CS
        SHMT 397 kfi 399
                 ++i
  KKY23182.1 420 DYI 422
                 *97 PP

>> DUF4142  Domain of unknown function (DUF4142)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   1.5e-06    0.0069      22      57 ..     310     345 ..     303     360 .. 0.87
   2 ?    0.0   0.1      0.21   9.2e+02      90     129 ..     420     458 ..     406     467 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.5e-06
     DUF4142  22 klAlqkaknpevkaFAqqmvadhtkaneeLkalask 57 
                  +Al++a++pe k++A+q++++ + +++eLk+l ++
  KKY23182.1 310 AVALKQASSPEFKQYASQVLKNAKSLENELKKLGHR 345
                 68*****************************99765 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.21
     DUF4142  90 aYleaqvaahqkavellekaaasgkdaelkafaektlptl 129
                 +Y+++ ++  q++ + l k+a+++kd + k +a++t p +
  KKY23182.1 420 DYIDKCIKIAQDVQASLPKEANKQKDFKAK-VASETVPEI 458
                 599999999999999999999999888865.666666665 PP

>> DUF2408  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0097        44       2      35 ..      24      57 ..      23     103 .. 0.87
   2 ?    2.6   0.1     0.043   1.9e+02      27      63 ..     315     351 ..     302     384 .. 0.71
   3 ?    4.5   0.0      0.01        47      70     105 ..     408     443 ..     403     468 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0097
     DUF2408  2 eelspelepiyekLvsirrsLlslaakskaeeak 35
                 e++pe+e+i++k ++ +r+ ++l+a++++++++
  KKY23182.1 24 TEVDPEVEAIMQKEIKRQRETIALIASENFTSKA 57
                689*************************998554 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.043
     DUF2408  27 akskaeeakeseevkeelkelkeeLkkieskrdeegk 63 
                   s+ e ++ +++v ++ k+l++eLkk+ ++ + +g 
  KKY23182.1 315 QASSPEFKQYASQVLKNAKSLENELKKLGHRLVADGT 351
                 334444445566699999*********9998888664 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.01
     DUF2408  70 kevvekgqavlngLlddcfdlvedlkaqdgeekkva 105
                 ++++e+  a +++ +d+c ++++d++a+  +e + +
  KKY23182.1 408 RGMSEQDFARVADYIDKCIKIAQDVQASLPKEANKQ 443
                 5678888889999*************9973333333 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.44     2e+03      26      88 ..      78     155 ..      65     194 .. 0.59
   2 ?   10.6   0.0   5.7e-05      0.25     152     216 ..     210     319 ..     202     436 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.44
                      CCCT--HHHHHHHHHHHHHTT-SEEEE.........ES-HHHHHHHHHHHH--TTEEEEEETT.......-HHHHSSTT CS
  Beta_elim_lyase  26 esYgedktvnrLedavaelfgkeaalf.........vpqGtaAnsillkillqrgeevivtep.......ahihfdetg 88 
                        Yg+++ + ++e  +++ + k++ l          + +G  An   +++++++++  +   +       +h++ + ++
       KKY23182.1  78 RYYGGNQHIDEIELLCQARALKAYNLDsekwgvnvqCLSGSPANLQVYQAIMRPHDRLMG-LDlphgghlSHGYQTPAR 155
                      556666655555555555444444443444444444778888888888888866554433.222455555555555555 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 5.7e-05
                      HHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT--SS-EEEEE-HH................................ CS
  Beta_elim_lyase 152 evaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkKdllanvGgvlafrddel.............................. 215
                      ++++ia++ g  l+ D A +    +s g+i++  f+y+D+vt    K l  + G++++fr+                                 
       KKY23182.1 210 RMRKIADSVGAYLMADIAHIS-GLVSAGVIPS-PFEYADIVTTTTHKSLRGPRGAMIFFRKGVRstnaktgqqvlydlegpinfsvfpghqggp 301
                      678999999********9876.5669999986.59*************************9844555566655555555555555555555555 PP

                      .................. CS
  Beta_elim_lyase 216 .................e 216
                                        
       KKY23182.1 302 hnhtitalavalkqassP 319
                      555555555555555550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      614  (0.0342462); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.35s 00:00:00.95 Elapsed: 00:00:00.49
# Mc/sec: 2942.60
//
Query:       KKY23183.1  [L=520]
Description: putative phosphoglyceratebisphosphoglycerate-independent [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-77  258.4   0.0    6.5e-77  257.8   0.0    1.3  1  iPGM_N           BPG-independent PGAM N-terminus (iPGM_N)
      1e-73  247.8   0.1    1.2e-73  247.6   0.1    1.0  1  Metalloenzyme    Metalloenzyme superfamily
    3.7e-07   29.8   0.0    5.6e-06   26.0   0.0    2.4  2  Sulfatase        Sulfatase
      4e-05   23.4   0.0    6.7e-05   22.6   0.0    1.4  1  Phosphodiest     Type I phosphodiesterase / nucleotide pyroph
      0.008   15.2   0.2      0.022   13.7   0.1    1.7  2  Alk_phosphatase  Alkaline phosphatase
  ------ inclusion threshold ------
      0.038   14.1   0.0      0.084   13.0   0.0    1.6  1  PglZ             PglZ domain


Domain annotation for each model (and alignments):
>> iPGM_N  BPG-independent PGAM N-terminus (iPGM_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.8   0.0   2.2e-80   6.5e-77       1     214 [.      92     304 ..      92     305 .. 0.95

  Alignments for each domain:
  == domain 1  score: 257.8 bits;  conditional E-value: 2.2e-80
                 HHHHHHCTGGGG-HHHHHHHHHHHHCTSEEEEEEE-SS--SS--CHHHHHHHHHHHHTT-SEEEEEEEE-SSSSTTT-HHHHHHHHHHHHHHCT--EEE CS
      iPGM_N   1 inkaiedgslfenealkeaiekakkngkalHllGLlSdGgVHShidhllallelakeegvkkvvvhaflDGRDtapksaleyleeleeklkelgvgkia 99 
                 i++++++g++++n+++++++++ak+ +++lHllGL+SdGgVHShi+hll ll++ake ++++v++h+f DGRDt+pks+l+ l++l e++k++g+g+ia
  KKY23183.1  92 IDQTLKKGEFNKNKVIVDTFTRAKNGNGRLHLLGLVSDGGVHSHINHLLGLLKVAKEMEIPQVFIHFFGDGRDTDPKSGLGHLKHLIEETKTIGTGEIA 190
                 8999*********************************************************************************************** PP

                 EEEEHHHHT--SS-HHHHHHHHHHHCCSSSEEECTTHHHHHHHHHHTT--GGG---EEE...TCCGGS--TT-EEEE----CCCCHHHHHHHHSTT... CS
      iPGM_N 100 svsGRyyaMDRdkrwervekaydalvkgegeskaesaveaieesyakgetDefveptviaeegkkegtikdgDaviffNFRaDRareltraltdke... 195
                 +++GRyy MDRdkrwerve + + +v+gege+ ++++v+++ee+y+kgetDef++p+++   g +e++ikd+D+++ffN+R+DR+re+t+++ d +   
  KKY23183.1 191 TIVGRYYIMDRDKRWERVEIGMKGVVTGEGEE-SSDPVKTVEERYEKGETDEFLKPIIV---GGDERRIKDDDTLFFFNYRSDRVREITQLIGDYDrsp 285
                 ****************************9987.689***********************...7899***************************533112 PP

                 HHCC.--TT-EEEESS-S- CS
      iPGM_N 196 fkefekakklklvtmteYd 214
                   +f  +k+++++tmt+Y+
  KKY23183.1 286 RPDFPYPKNIHVTTMTQYK 304
                 55566999**********8 PP

>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.6   0.1   3.9e-77   1.2e-73       2     247 ..       7     506 ..       6     507 .. 0.96

  Alignments for each domain:
  == domain 1  score: 247.6 bits;  conditional E-value: 3.9e-77
                    EEEEEEETTBB-...---GGGTTHHHS--HHHHHH....HHH........SEEEEEESSSTT----HHHHHHHH...................... CS
                    xxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxx....xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx...................... RF
  Metalloenzyme   2 kvvlvvlDGlGe...apadelnaihvAktPtldkL....kkeaPerw.likahgtavglpeddmgnsevgHlel...................... 67 
                    k+vl+v+DG+G+     +++ +ai  AktP++d++      +  + +  ++a+ +avglpe+ mgnsevgHl++                      
     KKY23183.1   7 KAVLIVIDGWGIpgeHSPKDGDAITNAKTPVMDSFaadnS-KTAQGYtELEASSLAVGLPEGLMGNSEVGHLNIgagrvvwqdvvridqtlkkgef 101
                    789*******8621156699999************66641.335678899********************************************** PP

                    ................................................................................................ CS
                    ................................................................................................ RF
  Metalloenzyme  68 ................................................................................................ 67 
                                                                                                                    
     KKY23183.1 102 nknkvivdtftrakngngrlhllglvsdggvhshinhllgllkvakemeipqvfihffgdgrdtdpksglghlkhlieetktigtgeiativgryy 197
                    ************************************************************************************************ PP

                    ................................................................................................ CS
                    ................................................................................................ RF
  Metalloenzyme  68 ................................................................................................ 67 
                                                                                                                    
     KKY23183.1 198 imdrdkrwerveigmkgvvtgegeessdpvktveeryekgetdeflkpiivggderrikdddtlfffnyrsdrvreitqligdydrsprpdfpypk 293
                    ************************************************************************************************ PP

                    ........................................HHHHTT-----EEEEEEEE-S---SSHHHHHT--EEEE--SHHSTT--HHHHHHHH CS
                    ........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme  68 ........................................lrisetvkfahvtffwnggrsgyfnpleereeipsdtvitfdlqpemkavevaeka 123
                                                             +++et+k+ahvtff+ngg++++f++ eere i+s++v+t+dl+p+m+a++va+k+
     KKY23183.1 294 nihvttmtqyktdytfpiafspqrmddvlaewlgkkgvkqSHVAETEKYAHVTFFFNGGVEKQFEG-EERELISSPKVATYDLEPKMSAQAVADKL 388
                    ****************************************999***********************.***************************** PP

                    HHHH.CC.-SEEEEEE-HHHHHHHTT-HHHHHHHHHHHHHHHHHHHTTS-TTTEEEEEE-SSB--TTTSS........-----EEEEEESTT---- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 124 ldailsgkfdlvvvniknaDmvGHtgdleatiaaieaaDeavkeildaieqvdgilvvtADHgnaedmvkrdkqplTsHtlepVPilivgkglapd 219
                    ++ i  +k+++++ n++ +DmvGHtg +ea+i+++ea D+a++ + + +++++ +l++tADHgnae+m +++ +p TsHt+++VP+++++   +  
     KKY23183.1 389 AERIADNKYEFLMNNFAPPDMVGHTGVYEAAIKGVEATDAAIGTVYEMCKKEGYVLFITADHGNAEEMLNEEGKPKTSHTTNKVPFVMANAP-EG- 482
                    ***************************************************************************************99884.21. PP

                    S--SSHHHHTT-TTEEEEGGGHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 220 kvkegakfrekggLanvaatllnllgle 247
                            +++g L++va+t+l  +g+e
     KKY23183.1 483 ----WSLKKQDGVLGDVAPTVLACMGIE 506
                    ....122346*************99987 PP

>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.4   4.3e+03       4      44 ..       9      53 ..       7      58 .. 0.65
   2 !   26.0   0.0   1.9e-09   5.6e-06      61     309 .]     291     505 ..     289     505 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.4
                EEEEESSE-TT..GSGGGTTTSCS..SHHHHHHHHTSEEESSEE- CS
   Sulfatase  4 vliladdlgag..dlglyggktat..tpnldrlaeeglrftnfys 44
                vli++d +g++  +    g+ + +  tp +d+ a+   +  ++y+
  KKY23183.1  9 VLIVIDGWGIPgeHSPKDGDAITNakTPVMDSFAADNSKTAQGYT 53
                899999999996633333333333448888888877666666665 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 1.9e-09
                 -HHHHTHSSCCSTTT.......HHCTTTS-HHHHHHHHTT-EEEEEEES-SCCSGGGSHHCCTTTSEEEETSSSCHHTCCCCCCCCCECTCCCTTTTCS CS
   Sulfatase  61 yphnsgvasntevgg.......gglpqteatLpellkeaGYntaaigkwhlgwssrqsvyknrgfdrflgfptgsaalkdpekseyngevlrvppeggy 152
                 yp+n +v+++t++ +        ++++  + L+e+l ++G+++   +  ++  +   +++ n+g ++ +++ + ++ ++ p+  +y         e+++
  KKY23183.1 291 YPKNIHVTTMTQYKTdytfpiaFSPQRMDDVLAEWLGKKGVKQ--SHVAETEKYAHVTFFFNGGVEKQFEG-EERELISSPKVATYD-------LEPKM 379
                 789999999999999999999888888889999*******999..33334444444444447777775553.335666665555554.......46789 PP

                 HHHHHHHHHHHHHHCCCTSSEEEEEEE-TTSSSTCTCGGHTCCGSTTTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSS CS
   Sulfatase 153 sddrlldealefllarndkpfflylatlapHappeapdeyakkyatffddgseaarqlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhga 251
                 s ++++d+++e + a ++k  fl+     +    +ap++ ++ +             ++ea    ve +D +ig v++      +++  ++++t+Dhg 
  KKY23183.1 380 SAQAVADKLAERI-A-DNKYEFLM-----NN---FAPPDMVGHT------------GVYEAAIKGVEATDAAIGTVYEMC----KKEGYVLFITADHGN 452
                 9999999999997.3.34555554.....33...5778888885............899*********************....7777899999***** PP

                 CCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHCEEECSEEEGGGHHHHHHHHTTE CS
   Sulfatase 252 sleesngplrggkganayeggtrvPllvwwpgekaprvseelvshiDlfptildlagi 309
                 +  e       gk  ++++   +vP++++   e  +  +++   + D++pt+l+++gi
  KKY23183.1 453 AE-E--MLNEEGKP-KTSHTTNKVPFVMANAPEGWS-LKKQDGVLGDVAPTVLACMGI 505
                 55.4..45555555.7889999******98777777.566666666**********97 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.2e-08   6.7e-05     143     236 ..     374     454 ..     288     478 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.2e-08
                   CHHHHHHHHHHHHHHHCHTHSHHHHHCT..SSESEEEEEECCCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---EE CS
  Phosphodiest 143 pledkvdkavlqtwldaafakvvlekel..ekpdlllvyleetDtvgHkfGpdspevedalrrvDkaigdLlealderglsaetniilvSDHGmad 236
                   +le k++        ++a a+  l+++    k+ +l+ ++  +D vgH  G ++ +  + ++  D+aig  +e  +++     + +++++DHG a+
    KKY23183.1 374 DLEPKMS--------AQAVAD-KLAERIadNKYEFLMNNFAPPDMVGH-TGVYE-AAIKGVEATDAAIGTVYEMCKKE----GYVLFITADHGNAE 454
                   2222333........222222.2222225699****************.66555.6799*******************....9**********776 PP

>> Alk_phosphatase  Alkaline phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.36   1.1e+03     203     226 ..     113     137 ..      93     138 .. 0.78
   2 !   13.7   0.1   7.3e-06     0.022     253     319 ..     398     463 ..     337     482 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.36
                      HHCTST.SSCEEEESSSSSCS-CCC CS
  Alk_phosphatase 203 kakeen.vkplLGLFadgdlkveld 226
                      +ak+ n   +lLGL  dg+++ +++
       KKY23183.1 113 RAKNGNgRLHLLGLVSDGGVHSHIN 137
                      445555579*********9999886 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 7.3e-06
                      EEEEEEETCHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHCHHCTTEEEEEEESSEESEEEESTTSTT CS
  Alk_phosphatase 253 FFLlVEGsrIDhaaHendavgalsEvvefdeAvkaalefakkeketlvvvTaDHshvfsfggyttrg 319
                       FL+   +  D  +H +    a++ v + d A+ ++ e+ kke   ++  TaDH  + ++   + ++
       KKY23183.1 398 EFLMNNFAPPDMVGHTGVYEAAIKGVEATDAAIGTVYEMCKKEGY-VLFITADHGNAEEMLNEEGKP 463
                      5788888888999****************************6655.5567*****998887666554 PP

>> PglZ  PglZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.8e-05     0.084     100     169 ..     383     452 ..     344     455 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.8e-05
        PglZ 100 lkkderrellkdkevvyivhnkv..Dalgdkaste..qksfeaveeslkelkelvkslleengykvlltaDHGf 169
                   +d+  e + d+++  ++ n+   D++g+  + e   k+ ea + ++ +++e+ k+    +gy +++taDHG+
  KKY23183.1 383 AVADKLAERIADNKYEFLMNNFAppDMVGHTGVYEaaIKGVEATDAAIGTVYEMCKK----EGYVLFITADHGN 452
                 445556668889999999999866699999665551156788999999988888775....5***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 3189.54
//
Query:       KKY23184.1  [L=123]
Description: putative prefoldin subunit 6 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-18   65.3  13.7    5.4e-18   64.9  13.7    1.2  1  Prefoldin_2   Prefoldin subunit
      0.004   17.2   4.9     0.0057   16.7   4.9    1.2  1  Prefoldin_3   Prefoldin subunit
  ------ inclusion threshold ------
      0.012   15.9   9.3       0.25   11.7   2.5    2.1  2  Rx_N          Rx N-terminal domain
      0.014   14.7   1.4      0.016   14.5   1.4    1.2  1  Rh5           Rh5 coiled-coil domain
      0.051   13.7   9.7      0.093   12.8   9.5    1.6  1  DivIVA        DivIVA protein
       0.18   11.9  11.1       0.25   11.5  11.1    1.2  1  End3          Actin cytoskeleton-regulatory complex protein E
       0.31   11.3   5.3       0.62   10.3   5.3    1.5  1  PHM7_cyt      Cytosolic domain of 10TM putative phosphate tra
        0.4   11.0  13.4        1.1    9.6   2.1    2.9  2  ABC_tran_CTD  ABC transporter C-terminal domain
        0.4   10.7   9.2       0.13   12.3   4.1    2.0  2  Rootletin     Ciliary rootlet component, centrosome cohesion
       0.94   10.0   5.7        6.6    7.3   2.3    2.2  2  NPV_P10       Nucleopolyhedrovirus P10 protein
       0.95    9.4  11.4        6.9    6.6  11.4    2.0  1  Prefoldin     Prefoldin subunit
        1.4    9.2  11.7        1.5    9.2   3.4    2.8  3  Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
          2    9.1   8.6        6.8    7.4   1.2    2.1  2  YabA          Initiation control protein YabA
        2.6    8.1  15.7        2.1    8.4   5.2    2.2  2  DHR10         Designed helical repeat protein 10 domain
        3.3    8.1  14.5         19    5.6   0.5    2.1  2  Uso1_p115_C   Uso1 / p115 like vesicle tethering protein, C t
        4.3    7.7   9.2       0.43   10.9   1.9    2.4  2  Osmo_CC       Osmosensory transporter coiled coil
        5.1    7.5  13.3        3.1    8.2   0.6    3.3  3  Csm1_N        Csm1 N-terminal domain
        6.9    6.5  16.6        1.6    8.5   2.7    3.1  3  DivIC         Septum formation initiator
        7.9    5.9  11.1       0.17   11.3   0.4    2.0  2  DUF4349       Domain of unknown function (DUF4349)
          9    6.8  10.1        4.2    7.8   0.8    3.0  3  FlaC_arch     Flagella accessory protein C (FlaC)
        9.9    6.5  11.5         22    5.3   1.2    2.2  2  Spc24         Spc24 subunit of Ndc80


Domain annotation for each model (and alignments):
>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9  13.7   6.3e-21   5.4e-18       1      99 [.      10     108 ..      10     118 .. 0.95

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 6.3e-21
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2   1 qelinkfqqlqqqlqqlaqqikqletqlkelelvleelelldedtkvyklvGdvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelkee 98 
                  q+l +++q++q++lq     +++le q +e+++v+ e+ +l  d ++ykl+G+vl+kq+k+e+   ++ r+e++ekeik++e q+ +l+++ e+ k e
   KKY23184.1  10 QALTEEYQKIQDDLQSTILARQKLESQQTENKSVKAEFTSLSTDSQIYKLIGPVLLKQEKNEAMMSVDGRLEFIEKEIKRIEGQIGDLQEQGEKKKLE 107
                  8899***************************************************************************************9998866 PP

                  H CS
  Prefoldin_2  99 l 99 
                  +
   KKY23184.1 108 V 108
                  5 PP

>> Prefoldin_3  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   4.9   6.6e-06    0.0057       4      95 ..       6      98 ..       3     105 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.6e-06
  Prefoldin_3  4 lyklreweaeydglkeeisalke...eddateedllriardfegslvtekEveeilGekqgvtrskqQvvdlisrRiDYVkqniktlekrleaae 95
                  +kl+  ++ey+++++++++      + ++++++  +++ +f + l t+  + +++G     +++k+  +  ++ R+ ++++ ik +e ++   +
   KKY23184.1  6 QQKLQALTEEYQKIQDDLQSTILarqKLESQQTENKSVKAEFTS-LSTDSQIYKLIGPVLL-KQEKNEAMMSVDGRLEFIEKEIKRIEGQIGDLQ 98
                 57788888888888888876543555778999999*******86.668889******9877.8999999999****************9986655 PP

>> Rx_N  Rx N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.5   0.00029      0.25      13      56 ..       2      45 ..       1      51 [. 0.94
   2 ?    8.8   0.6    0.0023         2      13      51 ..      65     104 ..      57     122 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00029
        Rx_N 13 laeeakllkgvkeeleklkdeLesiqavLedaeerqikdeavke 56
                +aee ++l+ + ee +k++d L+s     ++ e +q+++++vk+
  KKY23184.1  2 MAEEQQKLQALTEEYQKIQDDLQSTILARQKLESQQTENKSVKA 45
                89999*************************************96 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0023
        Rx_N  13 laeea.kllkgvkeeleklkdeLesiqavLedaeerqikd 51 
                 l++e  +  ++v++ le++++e ++i++ + d  e+ +k 
  KKY23184.1  65 LKQEKnEAMMSVDGRLEFIEKEIKRIEGQIGDLQEQGEKK 104
                 4444458999**********************99987754 PP

>> Rh5  Rh5 coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   1.4   1.9e-05     0.016     104     168 ..      30      94 ..       3     119 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.9e-05
         Rh5 104 yaelykseinnklskiknsainkdkeilksikslinilkkelesknlidklkFlkkeiedIinky 168
                 +++l  ++++nk  k    +++ d  i+k i  ++ + +k+++ +++   l+F++kei+ I  ++
  KKY23184.1  30 RQKLESQQTENKSVKAEFTSLSTDSQIYKLIGPVLLKQEKNEAMMSVDGRLEFIEKEIKRIEGQI 94 
                 55666678888888999999***************************************997665 PP

>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   9.5   0.00011     0.093      45     122 ..       3     100 ..       1     109 [. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
                 HHHHHCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....................XXXXXXXXXXXXXXXXXXX CS
      DivIVA  45 kekvkeleeklkeykeleetLkktlvvaqetaeevkanakkeaeliikeAekkaekive....................eaeeeakkiaeeieelkrq 122
                  e+ ++l+   +ey++++++L+ t+++ q+   + ++n + +ae++   ++ +  k++                       e+e+k+i+ +i +l++q
  KKY23184.1   3 AEEQQKLQALTEEYQKIQDDLQSTILARQKLESQQTENKSVKAEFTSLSTDSQIYKLIGpvllkqekneammsvdgrleFIEKEIKRIEGQIGDLQEQ 100
                 67889999999***************************************999999999999998777777766666655556666666666666665 PP

>> End3  Actin cytoskeleton-regulatory complex protein END3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5  11.1   0.00029      0.25     103     195 ..       6     108 ..       3     112 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00029
        End3 103 kreLaeLeeklekveeeaekr...kekereessksalvkreleqLLk....YKe...eqlreleegegkskeknlksvkedietveeqVegLesylssr 191
                 +++L+ L e+ +k++++ ++    ++k ++++++++ vk+e+  L +    YK      l++++++   s++  l+ ++++i+ +e q+  L++  +++
  KKY23184.1   6 QQKLQALTEEYQKIQDDLQSTilaRQKLESQQTENKSVKAEFTSLSTdsqiYKLigpVLLKQEKNEAMMSVDGRLEFIEKEIKRIEGQIGDLQEQGEKK 104
                 578999*******9999998876557888889999********9975555588622134555555555666699*******************999998 PP

        End3 192 keeL 195
                 k e 
  KKY23184.1 105 KLEV 108
                 8765 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   5.3   0.00073      0.62      37     138 ..       2     122 ..       1     123 [] 0.78

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00073
    PHM7_cyt  37 ivrdvkkldklveerekavrkleaalskykkngkklpkkr........................pthklgflglkligkkvda.idyyrekleeldeei 110
                 ++++ +kl+ l ee +k++  l+  +  ++k ++++  ++                        ++ k    + +     vd  ++++++++++++ +i
  KKY23184.1   2 MAEEQQKLQALTEEYQKIQDDLQSTILARQKLESQQTENKsvkaeftslstdsqiykligpvllKQEKN---EAM---MSVDGrLEFIEKEIKRIEGQI 94 
                 67778999*************99998777777766655557999******9998888877754422222...222...2567669************** PP

    PHM7_cyt 111 eeerekvkkkplgaaFvtfesersaaav 138
                  +++e+ +kk+l++  v+   +++aa++
  KKY23184.1  95 GDLQEQGEKKKLEVLKVQSGLQEQAAKA 122
                 ************9999988888888765 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   2.6    0.0068       5.8      39      59 ..       5      25 ..       1      34 [. 0.85
   2 ?    9.6   2.1    0.0013       1.1       9      33 ..      79     103 ..      65     122 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0068
  ABC_tran_CTD 39 dpeklaelsaeleeleaeLee 59
                   ++kl++l++e+++++++L+ 
    KKY23184.1  5 EQQKLQALTEEYQKIQDDLQS 25
                  4599*************9975 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0013
  ABC_tran_CTD   9 eleeleaeIeaLEeeiaeleaelad 33 
                   +le +e+eI ++E +i +l+++ ++
    KKY23184.1  79 RLEFIEKEIKRIEGQIGDLQEQGEK 103
                   57889***************98665 PP

>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   4.1   0.00015      0.13      70     119 ..       6      55 ..       2      60 .. 0.85
   2 ?    1.3   0.2      0.34   2.9e+02      60      97 ..      81     119 ..      62     123 .] 0.48

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00015
   Rootletin  70 eealakLeeErqrseklaqvnslLreqleearqaneaLtedlqkltkdwe 119
                 ++ l+ L eE q+ ++ +q   l r++le ++++n++ + +++ l++d +
  KKY23184.1   6 QQKLQALTEEYQKIQDDLQSTILARQKLESQQTENKSVKAEFTSLSTDSQ 55 
                 46789999999999999999999999999999999999999999998866 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.34
   Rootletin  60 eleeeesadleealakLeeErq.rseklaqvnslLreql 97 
                 e+ e+e++ +e  +  L+e  + +  ++++v s L+eq 
  KKY23184.1  81 EFIEKEIKRIEGQIGDLQEQGEkKKLEVLKVQSGLQEQA 119
                 444444455555555555532212334455555555555 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   2.3    0.0078       6.6      17      56 ..       6      45 ..       2      59 .. 0.85
   2 ?    4.2   0.1      0.07        60       5      28 ..      79     102 ..      70     121 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0078
     NPV_P10 17 ddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaelet 56
                ++k++al ++ +++q++l+ +    +kL++q+++ +++++
  KKY23184.1  6 QQKLQALTEEYQKIQDDLQSTILARQKLESQQTENKSVKA 45
                699*****************888899****9988777766 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.07
     NPV_P10   5 iLlvIradikavddkVdalqqqvd 28 
                  L  I ++ik ++ ++  lq+q +
  KKY23184.1  79 RLEFIEKEIKRIEGQIGDLQEQGE 102
                 455666777777777777776643 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  11.4    0.0081       6.9      10     106 ..       4     100 ..       2     121 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0081
                 HHHHHHHHHHHHHHHHHHHHHHHTT.-TT-EEEEEEETTEEEEEE--STTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  10 aelaqlkeaieelektletlktlkkedegkevlvplgaglyvkaevkdtdkvlvdlGagyyveksleeAiellkkkleelekqlekleeeleklkdq 106
                 +e+++l++  ee++k+ + l++ + + +  e +   ++++ ++ +  +td+ + +l   + ++ +++eA+  ++ +le +ek ++ +e ++ +l++q
  KKY23184.1   4 EEQQKLQALTEEYQKIQDDLQSTILARQKLESQQTENKSVKAEFTSLSTDSQIYKLIGPVLLKQEKNEAMMSVDGRLEFIEKEIKRIEGQIGDLQEQ 100
                 5778888888888888888888888777777777777777778888999999999999*********************************999998 PP

>> Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.4    0.0018       1.5       2      57 ..       5      60 ..       4      66 .. 0.81
   2 ?    4.4   0.1     0.055        47      60      80 ..      80     100 ..      78     104 .. 0.87
   3 ?    0.1   0.4       1.2   1.1e+03      10      24 ..     105     119 ..      98     121 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0018
  Lzipper-MIP1  2 esekrssLeqeveqLqerLqeeeklrraLekalssssdgsllslstllpkkakell 57
                  e++k ++L +e ++ q+ Lq     r+ Le+  +++++++   +s ++++++ +l+
    KKY23184.1  5 EQQKLQALTEEYQKIQDDLQSTILARQKLESQQTENKSVKAEFTSLSTDSQIYKLI 60
                  689999************************99945554555555555688888887 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.055
  Lzipper-MIP1  60 iallEeevvkLEqkllsLyrk 80 
                   ++ +E+e+ + E ++ +L+ +
    KKY23184.1  80 LEFIEKEIKRIEGQIGDLQEQ 100
                   6789***********999865 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.2
  Lzipper-MIP1  10 eqeveqLqerLqeee 24 
                   + ev++ q  Lqe+ 
    KKY23184.1 105 KLEVLKVQSGLQEQA 119
                   468999999999996 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   1.2     0.008       6.8      14      52 ..       6      47 ..       1      62 [. 0.61
   2 ?    6.4   1.1     0.016        14       4      56 ..      67     119 ..      64     123 .] 0.85

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.008
                HHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHH CS
        YabA 14 eeqleelleeleelkeelaelleenaeL...eleneklrerl 52
                +++l++l+ee ++++++l++++   ++L   ++en++++ ++
  KKY23184.1  6 QQKLQALTEEYQKIQDDLQSTILARQKLesqQTENKSVKAEF 47
                566777777777777777777766666622234566666555 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXX CS
        YabA   4 kelfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeee 56 
                 +e  +++++++ +le + +e+++++ ++ +l e+ ++ +le  k+++ l+e+ 
  KKY23184.1  67 QEKNEAMMSVDGRLEFIEKEIKRIEGQIGDLQEQGEKKKLEVLKVQSGLQEQA 119
                 5667889999999999*******************999999999999996654 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.2    0.0025       2.1      18      76 ..       6      50 ..       1      58 [. 0.54
   2 ?    5.7   2.8     0.017        15      68     107 ..      68     107 ..      65     122 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0025
       DHR10 18 arelqakidalqvvekdlrsciklleeieaelakleeakkklkelrdaleekeielrel 76
                +++lqa ++ +q+++ dl+s+i + +++e+++ + +++k++ ++              l
  KKY23184.1  6 QQKLQALTEEYQKIQDDLQSTILARQKLESQQTENKSVKAEFTS--------------L 50
                45555555555555555555555555555555555555555444..............4 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.017
       DHR10  68 ekeielrelerkeerlqrqlenaeeklerlreqaeekrea 107
                 ek++    ++ + e +++ +++ e ++  l+eq e+k+ +
  KKY23184.1  68 EKNEAMMSVDGRLEFIEKEIKRIEGQIGDLQEQGEKKKLE 107
                 6777788899999999999999999999999999999865 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4  10.9     0.052        45       4      59 ..       3      52 ..       1      74 [. 0.71
   2 ?    5.6   0.5     0.023        19      34      72 ..      67     105 ..      61     121 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.052
  Uso1_p115_C  4 seleseaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklek 59
                 +e++++ + l +e +k +++lqs+  a ++le++      ++++k+++ae  +l+ 
   KKY23184.1  3 AEEQQKLQALTEEYQKIQDDLQSTILARQKLESQ------QTENKSVKAEFTSLST 52
                 5677777888888888888888888888888888......6667777777666665 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.023
  Uso1_p115_C  34 leqkeakkaaesqakeleaenkklekeleklraelkeek 72 
                  +e+ ea  + + + + +e+e+k+ e ++ +l+++ ++ k
   KKY23184.1  67 QEKNEAMMSVDGRLEFIEKEIKRIEGQIGDLQEQGEKKK 105
                  344466777778888899999999999999999998865 PP

>> Osmo_CC  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.9      0.69   5.9e+02      10      33 ..      12      21 ..       4      37 .. 0.59
   2 ?   10.9   1.9   0.00051      0.43       4      34 ..      70     103 ..      67     110 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.69
                XXXXXTHHHHHHHHHHHHHHHHHH CS
     Osmo_CC 10 LqehYdnIEqkvedideeIaaLee 33
                L e+Y++I              + 
  KKY23184.1 12 LTEEYQKI--------------QD 21
                45555555..............43 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00051
                 XXXXXXXXXXXTHHHHHHHHHHHHHHHHHH...H CS
     Osmo_CC   4 eEAkelLqehYdnIEqkvedideeIaaLee...k 34 
                 +EA +    + + IE+++  i+ +I +L+e   k
  KKY23184.1  70 NEAMMSVDGRLEFIEKEIKRIEGQIGDLQEqgeK 103
                 5666666667788*****************6643 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.8      0.58   4.9e+02      40      58 ..       6      24 ..       2      27 .. 0.62
   2 ?    8.2   0.6    0.0036       3.1      33      58 ..      30      55 ..      25      59 .. 0.88
   3 ?    6.0   0.5     0.017        15      35      61 ..      79     105 ..      68     121 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.58
      Csm1_N 40 dqeiesLkeqlaeleekvk 58
                +q++++L e+ ++++ +++
  KKY23184.1  6 QQKLQALTEEYQKIQDDLQ 24
                5666666666666666655 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0036
      Csm1_N 33 sqkletkdqeiesLkeqlaeleekvk 58
                +qkle++++e +s+k++  +l ++++
  KKY23184.1 30 RQKLESQQTENKSVKAEFTSLSTDSQ 55
                79*****************9998875 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.017
      Csm1_N  35 kletkdqeiesLkeqlaeleekvkele 61 
                 +le  ++ei++++ q+  l+e+ ++ +
  KKY23184.1  79 RLEFIEKEIKRIEGQIGDLQEQGEKKK 105
                 567778899999999999999887655 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   2.4      0.25   2.1e+02      25      44 ..       5      24 ..       1      29 [. 0.48
   2 ?    8.5   2.7    0.0019       1.6      18      59 ..      18      58 ..      12      60 .. 0.77
   3 ?    4.7   1.4      0.03        26      21      51 ..      82     112 ..      78     121 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.25
                HHHHHHHHHHHHHHHHHHHH CS
       DivIC 25 eiaalqaelaklkaeneeLe 44
                e ++lqa  ++ ++ +++L+
  KKY23184.1  5 EQQKLQALTEEYQKIQDDLQ 24
                44444444444444444444 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0019
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXX CS
       DivIC 18 aykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyiee 59
                ++++  q      ++l++++ en++ +ae   L s+++ i +
  KKY23184.1 18 KIQDDLQSTILARQKLESQQTENKSVKAEFTSL-STDSQIYK 58
                555555666667899******************.67777765 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.03
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC  21 qlkqeiaalqaelaklkaeneeLeaevkdLk 51 
                  +++ei++++ ++  l+++ e+ + ev + +
  KKY23184.1  82 FIEKEIKRIEGQIGDLQEQGEKKKLEVLKVQ 112
                 67999*************9999999987765 PP

>> DUF4349  Domain of unknown function (DUF4349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   4.7       1.3   1.1e+03      98     144 ..       5      52 ..       2      59 .. 0.70
   2 ?   11.3   0.4    0.0002      0.17     111     153 ..      66     108 ..      62     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.3
     DUF4349  98 leasedrllallek.aksvedlleiereLsevqaeieslegqlryLdn 144
                  +++ + l++ ++k +++++  + + ++L++ q+e  s ++++ +L+ 
  KKY23184.1   5 EQQKLQALTEEYQKiQDDLQSTILARQKLESQQTENKSVKAEFTSLST 52 
                 445555555556555667777888888888888888888888888765 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.0002
     DUF4349 111 kaksvedlleiereLsevqaeieslegqlryLdnqvaystvtv 153
                 k+++ e ++++  +L+ +++ei ++egq+  L++q +  +++v
  KKY23184.1  66 KQEKNEAMMSVDGRLEFIEKEIKRIEGQIGDLQEQGEKKKLEV 108
                 778999****************************987777665 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.63   5.3e+02      20      37 ..       6      23 ..       1      28 [. 0.57
   2 ?    2.9   0.4      0.18   1.5e+02       8      27 ..      32      51 ..      24      60 .. 0.62
   3 ?    7.8   0.8    0.0049       4.2       1      34 [.      79     112 ..      79     117 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.63
   FlaC_arch 20 kkeneelsksveelkenV 37
                +++++ l ++ ++++++ 
  KKY23184.1  6 QQKLQALTEEYQKIQDDL 23
                455556666666666554 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
   FlaC_arch  8 klsklsteletvkkeneels 27
                kl++ +te ++vk+e+ +ls
  KKY23184.1 32 KLESQQTENKSVKAEFTSLS 51
                44444555555555554444 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0049
   FlaC_arch   1 ridelEnklsklsteletvkkeneelsksveelk 34 
                 r++ +E+++++++ +++ ++++ e+ + +v +++
  KKY23184.1  79 RLEFIEKEIKRIEGQIGDLQEQGEKKKLEVLKVQ 112
                 67889*****************998877776665 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   5.2     0.036        31      11      63 ..       7      60 ..       2      81 .. 0.62
   2 ?    5.3   1.2     0.026        22       9      43 ..      83     117 ..      66     122 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.036
       Spc24 11 kelsdleselesleselaelkeeleeleeeseekeserve.detllklklYrsL 63
                ++l+ l++e ++++  l++     ++le+++ e++s  +e  +     ++Y+ +
  KKY23184.1  7 QKLQALTEEYQKIQDDLQSTILARQKLESQQTENKSVKAEfTSLSTDSQIYKLI 60
                566677777777777777777777777777777444443333333555555555 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.026
       Spc24   9 iakelsdleselesleselaelkeeleeleeesee 43 
                 i ke++ +e ++ +l+++ +++k e+ ++++  +e
  KKY23184.1  83 IEKEIKRIEGQIGDLQEQGEKKKLEVLKVQSGLQE 117
                 67888888888888888888888888888776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2128  (0.11869); expected 358.6 (0.02)
Passed bias filter:                      704  (0.039266); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 813.38
//
Query:       KKY23185.1  [L=431]
Description: putative vacuolar sorting atpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-42  143.1   0.0    1.1e-41  142.4   0.0    1.4  1  AAA              ATPase family associated with various cellul
    2.2e-30  104.4   0.4    6.2e-30  103.0   0.4    1.8  1  Vps4_C           Vps4 C terminal oligomerisation domain
    7.8e-23   80.3   3.7    1.9e-22   79.1   3.7    1.7  1  MIT              MIT (microtubule interacting and transport) 
    6.7e-06   26.6   0.2    0.00015   22.2   0.0    2.8  2  AAA_16           AAA ATPase domain
    1.3e-05   25.0   0.0    2.5e-05   24.1   0.0    1.6  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    2.5e-05   24.3   0.0     0.0001   22.3   0.0    2.2  1  AAA_5            AAA domain (dynein-related subfamily)
    2.5e-05   24.0   0.0    9.5e-05   22.1   0.0    2.0  1  AAA_lid_3        AAA+ lid domain
    4.3e-05   22.9   0.0    7.1e-05   22.2   0.0    1.3  1  TIP49            TIP49 P-loop domain
    5.8e-05   22.9   0.0    0.00013   21.8   0.0    1.6  1  IstB_IS21        IstB-like ATP binding protein
    7.8e-05   23.0   0.0      0.011   16.1   0.0    2.5  2  RNA_helicase     RNA helicase
    0.00012   22.3   0.0     0.0041   17.3   0.0    2.3  2  AAA_2            AAA domain (Cdc48 subfamily)
    0.00014   22.1   0.1      0.019   15.2   0.0    2.6  2  AAA_22           AAA domain
    0.00023   20.4   0.0     0.0015   17.7   0.0    2.1  1  DUF815           Protein of unknown function (DUF815)
    0.00051   20.1   0.0      0.001   19.1   0.0    1.5  1  AAA_14           AAA domain
    0.00065   20.2   0.1     0.0025   18.3   0.0    2.0  1  AAA_18           AAA domain
    0.00098   19.2   0.0      0.089   12.9   0.0    2.3  2  Torsin           Torsin
     0.0023   18.1   0.0      0.005   17.0   0.0    1.7  1  AAA_33           AAA domain
     0.0045   16.7   0.1      0.014   15.1   0.0    1.8  2  AAA_24           AAA domain
      0.008   15.8   0.1       0.51    9.9   0.1    2.5  2  AAA_25           AAA domain
  ------ inclusion threshold ------
      0.011   16.1   0.1      0.041   14.3   0.0    2.0  1  AAA_17           AAA domain
      0.025   14.1   0.1       0.11   11.9   0.0    2.1  2  AAA_7            P-loop containing dynein motor region
      0.027   13.9   0.0      0.081   12.3   0.0    1.8  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.028   14.4   1.3       0.25   11.3   1.8    2.1  2  PaREP1           Archaeal PaREP1/PaREP8 family
      0.054   12.6   0.0      0.095   11.8   0.0    1.3  1  Parvo_NS1        Parvovirus non-structural protein NS1
      0.074   12.9   0.0       0.57   10.0   0.0    2.1  2  CPT              Chloramphenicol phosphotransferase-like prot
      0.077   12.9   0.0       0.66    9.9   0.0    2.1  2  NACHT            NACHT domain
      0.079   12.4   0.1       0.16   11.4   0.1    1.4  1  PhoH             PhoH-like protein
       0.16   11.7   0.6       0.26   10.9   0.6    1.3  1  Use1             Membrane fusion protein Use1
       0.16   11.7   0.0       0.45   10.2   0.0    1.8  1  Sigma54_activat  Sigma-54 interaction domain
       0.17   11.8   0.0        1.3    8.8   0.0    2.2  2  ATPase_2         ATPase domain predominantly from Archaea
       0.21   11.7   1.9       0.44   10.7   1.9    1.6  1  USP8_dimer       USP8 dimerisation domain
        0.4   10.4   2.0       0.52   10.0   0.1    2.2  3  Cytidylate_kin   Cytidylate kinase
          1    9.3   4.2         19    5.3   3.2    3.1  3  TPR_1            Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.4   0.0     2e-44   1.1e-41       1     131 [.     165     293 ..     165     294 .. 0.98

  Alignments for each domain:
  == domain 1  score: 142.4 bits;  conditional E-value: 2e-44
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 +llyGppGtGK++lakava+e++++f+++s s+l+sk++gese+ +++lf+ a+e++ p i+fiDEidal++ r ++ese ++r+  +Ll ++dgv ++
  KKY23185.1 165 ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLVKQLFAMARENR-PAIIFIDEIDALCGPRGEGESEASRRIKTELLVQMDGVGND 262
                 69******************************************************8.****************999********************** PP

                 SSTEEEEEEESSGGGSTHHHHSTTSSEEEETT CS
         AAA 100 eskvivigatnrpdkldpallrgRfdrkieie 131
                 ++ v+++gatn p++ld a++ +Rf+r+++i+
  KKY23185.1 263 SRGVLILGATNIPWQLDAAIR-RRFQRRVHIS 293
                 *********************.7*****9986 PP

>> Vps4_C  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.4   1.1e-32   6.2e-30       2      61 .]     368     427 ..     367     427 .. 0.99

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 1.1e-32
      Vps4_C   2 tPCspgdpgaiemtwmdipsdkllePpvtlkDflkalkkarptVskeDLekheeFTkefG 61 
                 tPCspgdp+a+emtw d++sdkllePp+tlkDf ka+k +rptVs+eDL+++ ++TkefG
  KKY23185.1 368 TPCSPGDPDAQEMTWVDVESDKLLEPPLTLKDFTKAIKASRPTVSSEDLNRNADWTKEFG 427
                 9**********************************************************9 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   3.7   3.5e-25   1.9e-22       1      65 []       7      72 ..       7      72 .. 0.97

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 3.5e-25
         MIT  1 ldkAlelvkkAveeDnagnyeeAlelYkealelLlqalk.ekneerrellrekieeYleRaeeLke 65
                l +A++ vkkA+e+D ag ye A++ Y +alel+++alk ekn++++e++r+k+ eY+eRae+Lk+
  KKY23185.1  7 LGRAIDQVKKAIELDTAGSYEQAYQQYYQALELFMLALKwEKNPKSKEMIRAKTGEYMERAEKLKN 72
                568************************************88***********************97 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       4.9   2.6e+03      97     106 ..      56      65 ..      10     129 .. 0.45
   2 !   22.2   0.0   2.7e-07   0.00015      23     123 ..     160     252 ..     153     269 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 4.9
      AAA_16  97 wrekleeala 106
                  r+k  e ++
  KKY23185.1  56 IRAKTGEYME 65 
                 3333333333 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 2.7e-07
      AAA_16  23 rp.elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaele.awrekleealaavpelagaeasrl 119
                 +p   +ll+G++G+GKs l+++++++++ +   f++    +l      s +      e+l++ql ++a+++ ++  + +++++  ++ +e ++++++r+
  KKY23185.1 160 QPwKGILLYGPPGTGKSYLAKAVATEANST---FFSVSSSDL-----VSKWMGES--ERLVKQLFAMARENRPAiIFIDEIDALCGPRGEGESEASRRI 248
                 556899******************999887...544444444.....12344444..478888888855433330233334444445555555555665 PP

      AAA_16 120 lell 123
                   +l
  KKY23185.1 249 KTEL 252
                 5555 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   4.6e-08   2.5e-05      30      97 ..     159     234 ..     132     292 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 4.6e-08
      RuvB_N  30 eealdhvllyGpPGlGkttlakiiakelgvkl.kitsgPvlek....agdlaalltnleekd...vlfideihrls 97 
                 +++   +llyGpPG Gk+ lak +a+e ++++  ++s+  ++k    +  l+  l  + +++   ++fidei  l 
  KKY23185.1 159 RQPWKGILLYGPPGTGKSYLAKAVATEANSTFfSVSSSDLVSKwmgeSERLVKQLFAMARENrpaIIFIDEIDALC 234
                 5566789*********************99872455566666532224456666666654433349******9876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.9e-07    0.0001       2      75 ..     165     231 ..     164     286 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.9e-07
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGG CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEve 75 
                 +lL GppGtgKs la+ +a   n++++ v      +++dl+ ++   ++ ++lv++ +   ar  +++i+++DE++
  KKY23185.1 165 ILLYGPPGTGKSYLAKAVATEANSTFFSV------SSSDLVSKWM--GESERLVKQLFA-MARenRPAIIFIDEID 231
                 89*****************9999999976......6889*****9..566666666665.444579*********8 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.7e-07   9.5e-05       3      34 ..     319     350 ..     318     366 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.7e-07
   AAA_lid_3   3 dlkeLAerTeGySGADlaalcreAallAlrrg 34 
                 d+k+L +++eGySG D++  ++ A +  +r  
  KKY23185.1 319 DFKALSSLSEGYSGSDISIAVQDALMQPVRKI 350
                 99************************999975 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.3e-07   7.1e-05      25     103 ..     133     213 ..      98     218 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.3e-07
                 XXXXXXXXXXXXXXX.X...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  25 glvGqkkareaagvi.v...elikekklaGravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevltqal 103
                 gl G k+a + a ++ +   +l + k+   +++Ll Gp+gtGk+ la a++ e +    f ++s+s++ s  +  +e l+++l
  KKY23185.1 133 GLEGAKEALKEAVILpIkfpHLFQGKRQPWKGILLYGPPGTGKSYLAKAVATEAN--STFFSVSSSDLVSKWMGESERLVKQL 213
                 667777775544443222226889999999**********************987..67999*************99998765 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   2.4e-07   0.00013      49     117 ..     164     230 ..     159     242 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.4e-07
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkra.rrdgklaralkrllkvdllilDdl 117
                 +i+l Gp+G+GKs+la a+++ea  + +sv   + +dLv++   + +r  k   a++r  +++++ +D++
  KKY23185.1 164 GILLYGPPGTGKSYLAKAVATEANSTFFSV---SSSDLVSKWMGEsERLVKQLFAMARENRPAIIFIDEI 230
                 799****************99987666655...5677777654330333344445566666677777776 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.1e-05     0.011       1      26 [.     165     190 ..     165     226 .. 0.80
   2 ?    4.3   0.0     0.094        51       3      26 ..     233     256 ..     232     273 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.1e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl 26 
                   i+lyGp+g+GKS+lak +a++  +++
    KKY23185.1 165 ILLYGPPGTGKSYLAKAVATEANSTF 190
                   789**************888877655 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.094
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl 26 
                   l+Gp+geG S +++++ ++ll ++
    KKY23185.1 233 LCGPRGEGESEASRRIKTELLVQM 256
                   79**************99999777 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.27   1.4e+02      29      60 ..      43      81 ..      16      90 .. 0.76
   2 !   17.3   0.0   7.5e-06    0.0041       6      92 ..     165     246 ..     160     265 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.27
                -..........-EEEEEGGG---.----THHHHHHHHHT CS
       AAA_2 29 v......kkekkliradaselle.eeevehlvsrligap 60
                +       k+k++ira   e++e +e++++ +++  g++
  KKY23185.1 43 AlkweknPKSKEMIRAKTGEYMErAEKLKNHLAQQDGNK 81
                14445446889************7788888888777665 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 7.5e-06
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----.--------- CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpk.essgadvSr 92 
                 ill gp g+Gk++laka+a   +     ++  +  s+l      e+e+lv++l      + + +   i+++DEid  +   ++ +++ Sr
  KKY23185.1 165 ILLYGPPGTGKSYLAKAVATEANS----TFFSVSSSDLVSkwMGESERLVKQLFA----MARENRPAIIFIDEIDALCGPrGEGESEASR 246
                 899*******************93....666666666666333466666666654....44555667********998765555555555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.5e-05     0.019       8      30 ..     165     187 ..     162     201 .. 0.86
   2 ?    4.0   0.0       0.1        56      75     104 ..     206     234 ..     196     273 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.5e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqld 30 
                 ++++G++GtGK++l++ ++ +++
  KKY23185.1 165 ILLYGPPGTGKSYLAKAVATEAN 187
                 799***************99873 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.1
      AAA_22  75 seellealeqalraravielliiDEaqhlr 104
                 se+l+++l   +r+ +  +++ iDE++ l 
  KKY23185.1 206 SERLVKQLFAMARENRP-AIIFIDEIDALC 234
                 67788777777888888.9********996 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.8e-06    0.0015      23     115 ..     124     229 ..     106     234 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.8e-06
      DUF815  23 devklddLvgidkqkealvente......qfleg..lpannvLLwGarGtGKSslvkallneyaeeg..Lrlievekedlkelpklvellr...erper 108
                  +++++d+ g++  keal+e +       ++ +g  +p + +LL+G  GtGKS l ka+ +e++++   +   ++  + + e ++lv++l    ++++ 
  KKY23185.1 124 PNIRWEDVAGLEGAKEALKEAVIlpikfpHLFQGkrQPWKGILLYGPPGTGKSYLAKAVATEANSTFfsVSSSDLVSKWMGESERLVKQLFamaRENRP 222
                 56777777777777777777653222121344441257799**********************999844333455566666667777665422256677 PP

      DUF815 109 filfvDD 115
                  i+f+D 
  KKY23185.1 223 AIIFIDE 229
                 8888886 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.9e-06     0.001       5      75 ..     165     232 ..     162     255 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.9e-06
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqe 75 
                 +++ G+  +GK++l+k ++ e     + ++ ++  d   k + ++e+l + ++++++e++  ++f+DEi  
  KKY23185.1 165 ILLYGPPGTGKSYLAKAVATEAN---STFFSVSSSDLVSKWMGESERLVKQLFAMARENRPAIIFIDEIDA 232
                 7899**************98888...88888988888888888888888888887666799********76 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   4.6e-06    0.0025       1      39 [.     165     206 ..     165     233 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 4.6e-06
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf...gvnlrdvakenglll 39 
                 Ill G+pG+GK+ lak+++ + ++   +v ++d++++ + + 
  KKY23185.1 165 ILLYGPPGTGKSYLAKAVATEANStffSVSSSDLVSKWMGES 206
                 99****************999766889888888887755544 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0       0.1        55      41      66 ..      70      99 ..      62     101 .. 0.78
   2 !   12.9   0.0   0.00016     0.089      44      92 ..     153     204 ..     133     211 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.1
                HHHHHT-S..S-SS-EEEEEEE-T..TSSH CS
      Torsin 41 vkaylene..kpkkpLvlsfhGwt..GtGk 66
                +k +l+++  + +kp +ls+ G++  GtGk
  KKY23185.1 70 LKNHLAQQdgNKRKPAALSVNGKAsnGTGK 99
                7788866545899*********75338887 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00016
                 HHT-SS-SS-EEEEEEE-TTSSHHHHHHHHH...HHHSTTGGGSTTEEEEEH CS
      Torsin  44 ylenekpkkpLvlsfhGwtGtGknfvaeiia...enlyrdGlrsdyvkkfva 92 
                 +l + k +    + ++G +GtGk+++a+ +a   + ++ + + sd v k+++
  KKY23185.1 153 HLFQGKRQPWKGILLYGPPGTGKSYLAKAVAteaNSTFFSVSSSDLVSKWMG 204
                 5555555544556789************996333678999999999999876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   9.1e-06     0.005       2      39 ..     165     204 ..     165     292 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 9.1e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfg 39 
                 +ll G+pG+GKs+la+ ++ +    ++ +ss +l ++  g
  KKY23185.1 165 ILLYGPPGTGKSYLAKAVATEANstFFSVSSSDLVSKWMG 204
                 6789**************9888888888888885555444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       5.8   3.1e+03      85     117 ..      11      43 ..       5      71 .. 0.70
   2 !   15.1   0.0   2.6e-05     0.014       5      29 ..     165     191 ..     163     245 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.8
      AAA_24  85 virqnekaeskedkgdgkGygelaeefrrllkk 117
                 +++ +++ e  + +++ ++y+++ + +  ++ +
  KKY23185.1  11 IDQVKKAIELDTAGSYEQAYQQYYQALELFMLA 43 
                 555666666666677777777766655555544 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 2.6e-05
      AAA_24   5 iliyGpsgiGKTtlakel..gpkplfi 29 
                 il+yGp+g+GK++lak    + +  f+
  KKY23185.1 165 ILLYGPPGTGKSYLAKAVatEANSTFF 191
                 89**************98654443333 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00095      0.51      36      54 ..     165     183 ..     152     189 .. 0.83
   2 ?    3.1   0.0      0.11        60     128     167 ..     208     246 ..     186     256 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00095
      AAA_25  36 allaGapgtGKttlaldla 54 
                 +ll+G+pgtGK+ la  +a
  KKY23185.1 165 ILLYGPPGTGKSYLAKAVA 183
                 79************97766 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
      AAA_25 128 advdaleaaieevegvrlvviDplsralggdensnsdvga 167
                 + v++l a ++e ++++ + iD +++++g   + +s++++
  KKY23185.1 208 RLVKQLFAMARE-NRPAIIFIDEIDALCGPRGEGESEASR 246
                 567889999999.88**************97777777643 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   7.6e-05     0.041       1      38 [.     168     207 ..     168     232 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.6e-05
                 EE-TTSSHHHHHHHHHHHHTEEEE..EHHHHHHHHHHTTT CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthl..saGdllreeakrgg 38 
                 +G+PG GK+ +++ ++ + + t++  s +dl+ + + +++
  KKY23185.1 168 YGPPGTGKSYLAKAVATEANSTFFsvSSSDLVSKWMGESE 207
                 7*****************9888761166888887776665 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00021      0.11      34      64 ..     163     193 ..     149     233 .. 0.65
   2 ?   -1.9   0.0       3.8     2e+03     149     175 ..     266     292 ..     264     294 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00021
       AAA_7  34 kpvllvGptGtGKtviikdllkkldkekyls 64 
                 k +ll+Gp GtGK+ ++k + ++ +++ +++
  KKY23185.1 163 KGILLYGPPGTGKSYLAKAVATEANSTFFSV 193
                 679***************9998888333332 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.8
       AAA_7 149 vqlvaamgppgggrneitpRllrhfnv 175
                 v +++a + p +    i  R++r++++
  KKY23185.1 266 VLILGATNIPWQLDAAIRRRFQRRVHI 292
                 6788999999999999*******9875 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00015     0.081      25      43 ..     165     183 ..     161     193 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00015
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +ll+GppG+GK+ lak+++
    KKY23185.1 165 ILLYGPPGTGKSYLAKAVA 183
                   89*************9976 PP

>> PaREP1  Archaeal PaREP1/PaREP8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.8   0.00047      0.25       6      74 ..      10      74 ..       6      87 .. 0.81
   2 ?   -0.9   0.0       2.8   1.5e+03      63      87 ..     319     343 ..     294     345 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00047
      PaREP1  6 aekeleeAeellekGdlrqAaeKaykAvkalvkalaeknnlklleeaeekerwstkellkavaklleel 74
                a + ++ A el   G + qA + +y+A + ++ al  ++n k     +e+ r +t+e+++ ++kl + l
  KKY23185.1 10 AIDQVKKAIELDTAGSYEQAYQQYYQALELFMLALKWEKNPKS----KEMIRAKTGEYMERAEKLKNHL 74
                5667889****************************99988877....5555566777777777765554 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.8
      PaREP1  63 llkavaklleelgdkevvdlwklAl 87 
                  +ka+++l+e + + +++ +++ Al
  KKY23185.1 319 DFKALSSLSEGYSGSDISIAVQDAL 343
                 6899*********9****9999997 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00017     0.095     110     136 ..     158     184 ..     150     194 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00017
   Parvo_NS1 110 qlgkrntvwfyGpantGktnlaeaIak 136
                 + ++   +++yGp+ tGk++la+a a+
  KKY23185.1 158 KRQPWKGILLYGPPGTGKSYLAKAVAT 184
                 556666799***************986 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0011      0.57       4      41 ..     165     202 ..     163     225 .. 0.85
   2 ?    0.2   0.0       1.1   5.9e+02      15      78 ..     333     406 ..     327     410 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0011
                 EEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS CS
         CPT   4 ilLnGgsssGKsslaralqevldepwlhlgvDafveal 41 
                 ilL G + +GKs la+a+ + ++ +++ + +  +v + 
  KKY23185.1 165 ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 202
                 89**************************9987777664 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.1
                 HHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGT..........STTSEEEETTSEEE-HHHHHHHHHHHHHHHH CS
         CPT  15 sslaralqevldepwlhlgvDafvealppkrqd..........eadglefeteleeigpeldlllaalyeavaa 78 
                 s ++ a+q+ l +p  ++++ +  +++     +          +a+++ +  ++ +   e +l+l+ +++a++a
  KKY23185.1 333 SDISIAVQDALMQPVRKIQTATHYKKVTVDGEEkvtpcspgdpDAQEMTWVDVESDKLLEPPLTLKDFTKAIKA 406
                 55777888888888888888777777766655566778888778889999988888878888999999999988 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0012      0.66       3      25 ..     165     187 ..     163     196 .. 0.90
   2 ?    0.6   0.0      0.89   4.8e+02      56     100 ..     197     243 ..     188     256 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0012
                 EEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT   3 vilqGeaGsGKTtLlqklalawa 25 
                 ++l G++G GK++L++ +a+++ 
  KKY23185.1 165 ILLYGPPGTGKSYLAKAVATEAN 187
                 7899**************99875 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.89
                 HHHCCCCTS--SSS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH.... CS
       NACHT  56 dllfsqlpepaapvsevwavllelperlLlilDglDelvtdlgq...k 100
                 dl+ + + e+++ v++ +a+  e  + + + +D +D l+   g+   +
  KKY23185.1 197 DLVSKWMGESERLVKQLFAMARE-NRPAIIFIDEIDALCGPRGEgesE 243
                 55555566677777775555444.455556679999999988884321 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1    0.0003      0.16      23      43 ..     166     186 ..     162     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0003
                 EEE--TTSSTTHHHHHHHHHH CS
        PhoH  23 faiGpaGtGKtylavalavea 43 
                    Gp GtGK+yla a+a ea
  KKY23185.1 166 LLYGPPGTGKSYLAKAVATEA 186
                 568**************9887 PP

>> Use1  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.6   0.00049      0.26      29     110 ..      31     112 ..      19     125 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00049
        Use1  29 ekyvkaleemleeLkkesskpskevlk....eYsekveaLkllleaeklssteekalanqllapgeeskeekeeskereeaskelr 110
                 ++y +ale ++ +Lk e++++ske+++    eY e+ e Lk+ l+++  ++ ++ al  +       s+ + + ++e++  +k+lr
  KKY23185.1  31 QQYYQALELFMLALKWEKNPKSKEMIRaktgEYMERAEKLKNHLAQQDGNKRKPAALSVNGK----ASNGTGKGDDEEDADAKKLR 112
                 7899*******************999766669**************9999444444443333....34455555555566666555 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00082      0.45      25      57 ..     165     194 ..     154     235 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00082
                      EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEE CS
  Sigma54_activat  25 vlitGesGtGKellaraiheaskrkekpfvavn 57 
                      +l+ G  GtGK++la+a+ ++ +   + f +v 
       KKY23185.1 165 ILLYGPPGTGKSYLAKAVATEAN---STFFSVS 194
                      89**************9976543...4455555 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0025       1.3      17      44 ..     159     186 ..     156     194 .. 0.86
   2 ?   -0.8   0.0       2.2   1.2e+03     110     130 ..     213     233 ..     195     241 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0025
    ATPase_2  17 repneiyfiYGpegsGKtaLlkeiienl 44 
                 r+p++ +++YGp g GK+ L k ++++ 
  KKY23185.1 159 RQPWKGILLYGPPGTGKSYLAKAVATEA 186
                 7888999***************998876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.2
    ATPase_2 110 lekikkkgkkiiiiiDelqkl 130
                 l ++ ++ +  ii+iDe+  l
  KKY23185.1 213 LFAMARENRPAIIFIDEIDAL 233
                 345566666688889998766 PP

>> USP8_dimer  USP8 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.9   0.00082      0.44      35     111 ..       7      77 ..       1      81 [. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00082
  USP8_dimer  35 lrsaeklfkkAeeyrlegdeEkAYvlymkylnllelIrkksdykekkasvkellgdkkankvildklekLkesLkkr 111
                 l +a   +kkA e    g  E+AY  y + l l+ l  k ++  + k+++++     k  ++ ++++ekLk+ L ++
  KKY23185.1   7 LGRAIDQVKKAIELDTAGSYEQAYQQYYQALELFMLALKWEKNPKSKEMIRA-----KTGEY-MERAEKLKNHLAQQ 77 
                 5556666899999*********************888877766667777766.....44578.89*********986 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00095      0.52       3      29 ..     167     193 ..     165     197 .. 0.88
   2 ?   -2.9   0.0       8.6   4.7e+03       2      25 ..     232     255 ..     232     264 .. 0.83
   3 ?   -2.2   0.1       5.2   2.8e+03     131     148 ..     273     290 ..     253     296 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00095
                     EE-STTSSHHHHHHHHHHHHT-EEEEH CS
  Cytidylate_kin   3 iDGPagsGKssvaralaeklglkyldt 29 
                     + GP g+GKs +a+a+a++ + ++++ 
      KKY23185.1 167 LYGPPGTGKSYLAKAVATEANSTFFSV 193
                     67******************9999875 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 8.6
                     EEE-STTSSHHHHHHHHHHHHT-E CS
  Cytidylate_kin   2 aiDGPagsGKssvaralaeklglk 25 
                     a+ GP g G s  +r++ ++l ++
      KKY23185.1 232 ALCGPRGEGESEASRRIKTELLVQ 255
                     577999999999999998887665 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 5.2
                     SEEEEEE--HHHHHHHHH CS
  Cytidylate_kin 131 elKifldAsveeRakRRl 148
                     ++   ldA ++ R +RR+
      KKY23185.1 273 NIPWQLDAAIRRRFQRRV 290
                     5556799*********97 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       1.7   9.1e+02      20      31 ..      10      21 ..       9      22 .. 0.84
   2 ?    5.3   3.2     0.035        19      10      30 ..      19      39 ..      14      40 .. 0.84
   3 ?    0.7   0.0         1   5.5e+02      21      29 ..     397     405 ..     389     406 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1.7
                HHHHHHHHHHHS CS
       TPR_1 20 AleyyekALeln 31
                A++  +kA+el+
  KKY23185.1 10 AIDQVKKAIELD 21
                777789****98 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.035
                HHHHTT-HHHHHHHHHHHHHH CS
       TPR_1 10 ayfklgkydeAleyyekALel 30
                 +   g y++A + y +ALel
  KKY23185.1 19 ELDTAGSYEQAYQQYYQALEL 39
                5666799*************8 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 1
                 HHHHHHHHH CS
       TPR_1  21 leyyekALe 29 
                 l+++ kA++
  KKY23185.1 397 LKDFTKAIK 405
                 455555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.50
# Mc/sec: 2589.58
//
Query:       KKY23186.1  [L=599]
Description: putative cbs pb1 domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-34  117.1   6.3    2.4e-09   37.5   0.0    5.3  6  CBS       CBS domain
    6.7e-09   35.6   0.0    2.5e-08   33.8   0.0    2.0  1  PB1       PB1 domain
  ------ inclusion threshold ------
      0.079   13.3   0.1        1.5    9.2   0.0    2.5  2  YbbR      YbbR-like protein


Domain annotation for each model (and alignments):
>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   1.7e-11     1e-07      12      55 ..      36      79 ..      29      81 .. 0.91
   2 !   37.5   0.0     4e-13   2.4e-09       2      47 ..      92     137 ..      91     141 .. 0.93
   3 !   21.1   0.1   5.3e-08   0.00032       8      53 ..     202     246 ..     196     249 .. 0.88
   4 !   24.5   0.1   4.5e-09   2.7e-05       3      47 ..     262     306 ..     260     313 .. 0.88
   5 ?   -3.9   0.0         3   1.8e+04      29      40 ..     418     429 ..     416     434 .. 0.72
   6 ?   -1.2   0.0       0.5     3e+03      37      56 ..     470     489 ..     463     492 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 1.7e-11
                EETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHHHH CS
         CBS 12 vppdttleealelmrekgvsrlPVVdedgklvGivtlrDllral 55
                ++p+tt++ea++lm+ k+ ++++V+d+d+++ Gi+t +Dl+  +
  KKY23186.1 36 IKPNTTVAEAAQLMAAKREDCVLVTDDDERIAGIFTAKDLAFRV 79
                89************999989**9*****************9765 PP

  == domain 2  score: 37.5 bits;  conditional E-value: 4e-13
                 HHHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEE CS
         CBS   2 gdimtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivt 47 
                 +dimt+++++++ dt+  +al+lm++kg+++lPV+de+  + Gi+ 
  KKY23186.1  92 ADIMTKNPLCARTDTSATDALDLMVRKGFRHLPVMDENQDISGILD 137
                 79*********************************99999999986 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 5.3e-08
                 SCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHH CS
         CBS   8 dvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllr 53 
                 ++ +v+  t++++a+ +mre++ +++  V ++g + Gi+t +D++ 
  KKY23186.1 202 PPTVVSVRTSVKDAAVQMRENHTTAV-LVQDQGSITGIFTSKDVVL 246
                 67789999**********87777788.7899************975 PP

  == domain 4  score: 24.5 bits;  conditional E-value: 4.5e-09
                 HHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEE CS
         CBS   3 dimtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivt 47 
                  +mt+ + ++p d+++  al++m + ++  lPV++e g++vG+v 
  KKY23186.1 262 RVMTPHPDFAPTDMSIQAALRKMHDGHYLNLPVMNETGEIVGMVD 306
                 58*****9***************444488**************95 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 3
                 TSSEEEEEETTT CS
         CBS  29 gvsrlPVVdedg 40 
                 +v+rl VV + g
  KKY23186.1 418 RVHRLQVVASAG 429
                 499999996555 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 0.5
                 ETTTBEEEEEEHHHHHHHHH CS
         CBS  37 dedgklvGivtlrDllrall 56 
                 d++g  v i t+ Dl++a++
  KKY23186.1 470 DNEGDTVSITTDQDLIDAIA 489
                 55666777778888888875 PP

>> PB1  PB1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   4.1e-12   2.5e-08       2      83 ..     408     505 ..     407     506 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 4.1e-12
                 EEEEEEETTEEEEEEEEGSSS-HHHHHHHHHHHHTST................CCSEEEEEEETTSSEEEESSHHHHHHHHHHHHHTSSCCEEEEEEE CS
         PB1   2 vdlKlrygggirrelsvssnisfeeLrakvekrfkls................dedvklkYpdedgdlVtitsDeDLeealeearslksktlrlhvqd 83 
                 + +K++   g++++l+v ++   +eL+a+v  +++ +                ++  +l+Y d++gd V+it+D DL +a+  ar++ + ++ l+++d
  KKY23186.1 408 FPFKFKAPSGRVHRLQVVASAGMTELIANVTAKLGGEieavggeatveegklgKAGYALSYMDNEGDTVSITTDQDLIDAIALARQSHRDKVDLFIHD 505
                 567888888888899***********************************************************************9888****9986 PP

>> YbbR  YbbR-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.084     5e+02      47      77 ..       3      32 ..       1      42 [. 0.87
   2 ?    9.2   0.0   0.00026       1.5      13      44 ..     461     492 ..     452     501 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.084
                -EEE-TT--BEEE-EEESS-TTSEEEES.--E CS
        YbbR 47 vyvDlsglkedvtvevklllpdgnveve.Pst 77
                +  Dls+ k++++ + + ++p+g+v  + Ps+
  KKY23186.1  3 A--DLSKKKTTTKARHTRKAPPGTVLALkPSQ 32
                5..*********************99988665 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00026
                 TTT-EEEE--.-EEEEEEEE-HHHHHHHTTS- CS
        YbbR  13 aegyvvvsgtpepvtVtvtGpesvldkieevk 44 
                 + gy+++ +  e +tV++t +++++d i+ ++
  KKY23186.1 461 KAGYALSYMDNEGDTVSITTDQDLIDAIALAR 492
                 679************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.48
# Mc/sec: 3772.67
//
Query:       KKY23187.1  [L=129]
Description: putative 40s ribosomal protein s26 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-47  157.9  12.2    4.1e-46  155.8  12.2    1.8  1  Ribosomal_S26e  Ribosomal protein S26e
  ------ inclusion threshold ------
      0.015   15.2   0.4      0.062   13.3   0.0    2.1  2  zf_CopZ         Zinc binding domain
      0.076   12.8   0.3       0.13   12.1   0.3    1.3  1  DUF4668         Domain of unknown function (DUF4668)
       0.22   11.9   1.7       0.38   11.1   1.6    1.3  1  SF1-HH          Splicing factor 1 helix-hairpin domain


Domain annotation for each model (and alignments):
>> Ribosomal_S26e  Ribosomal protein S26e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.8  12.2   9.2e-50   4.1e-46       1     106 [.       1     114 [.       1     116 [. 0.94

  Alignments for each domain:
  == domain 1  score: 155.8 bits;  conditional E-value: 9.2e-50
                     X--S-SSTT----S-S---EEE-TTT--EEES----EEEEEEESS-SSSHHHHTTSBSSSS----EEEEEEE--HHHHHHTTSS-........-- CS
  Ribosomal_S26e   1 mtkKRrnngrnkkgrghvkivrCsncarlvpkdKaikrfvvrniveaaavrdlseasvyeeyalPklYiklaycvscaihskvvr........vR 87 
                     m kKR +ngrnkkgrghvk++rCsnc+r++pkdKaikrf++rn+ve+aa+rd+s+asv+++ya+Pk+Y+kl+ycvscaih k+vr        vR
      KKY23187.1   1 MVKKRASNGRNKKGRGHVKPIRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFTDYAVPKMYLKLQYCVSCAIHGKIVRndsdnvcsVR 95 
                     899*********************************************************************************95555555569 PP

                     -TTTTS--S-S---XXX.. CS
  Ribosomal_S26e  88 sredrknreppkrvrkkke 106
                     sre+r+nr+pp+r+r +k+
      KKY23187.1  96 SREGRRNRAPPPRIRYNKD 114
                     999***********99886 PP

>> zf_CopZ  Zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.4e-05     0.062       2      32 ..      24      54 ..      23      60 .. 0.87
   2 ?   -0.9   0.1      0.37   1.7e+03       4      16 ..      74      86 ..      72      88 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.4e-05
                -B-TTT--B-EEE-HHHHHHHB-GGGGGG-- CS
     zf_CopZ  2 kkCPvCgkkGkkVkliTvkhllkpellekvk 32
                ++C +C  k k +k++T++++++  +   ++
  KKY23187.1 24 SNCSRCTPKDKAIKRFTIRNMVESAAIRDIS 54
                58*********************99887654 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.37
                -TTT--B-EEE-H CS
     zf_CopZ  4 CPvCgkkGkkVkl 16
                C +C   Gk V++
  KKY23187.1 74 CVSCAIHGKIVRN 86
                999*999999986 PP

>> DUF4668  Domain of unknown function (DUF4668)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   2.9e-05      0.13      67      96 ..      17      44 ..       6      50 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.9e-05
     DUF4668 67 krkpkrCskikcsrcnarkkhPkwFklkyw 96
                + kp rCs  +csrc+ + k  k+F+++++
  KKY23187.1 17 HVKPIRCS--NCSRCTPKDKAIKRFTIRNM 44
                56899**9..6****************985 PP

>> SF1-HH  Splicing factor 1 helix-hairpin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.6   8.5e-05      0.38      58      82 ..      97     123 ..      78     128 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.5e-05
      SF1-HH  58 e..eeeRspSPpPvYdanGkRtntrev 82 
                 +  +++R p P   Y+++Gk++n +++
  KKY23187.1  97 RegRRNRAPPPRIRYNKDGKKINPQQA 123
                 23467888888889*********8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.47
# Mc/sec: 818.55
//
Query:       KKY23188.1  [L=347]
Description: putative carboxylesterase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-60  205.5   0.3    2.1e-60  205.1   0.3    1.1  1  COesterase     Carboxylesterase family
    2.1e-07   31.0   0.2    5.6e-06   26.4   0.0    2.0  2  Abhydrolase_3  alpha/beta hydrolase fold
    0.00064   19.3   0.0     0.0009   18.8   0.0    1.2  1  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.1   0.3   3.5e-64   2.1e-60      20     233 ..      42     302 ..      30     342 .. 0.80

  Alignments for each domain:
  == domain 1  score: 205.1 bits;  conditional E-value: 3.5e-64
                 STCSEEEEEEEEESSB---GGGTTS--BE----SS.EEECBS---BESEECSSSSSCGHHCHHH..............................BES-- CS
  COesterase  20 ksekevdaFlGiPYAepPvgelRFkkPepaepwtg.vrdAtkfspaCpqnaeksekeekeleaw..............................vsEDC 87 
                 +s+ +++ F  i+YA+pP+gelR+++P+ ++  +  + d t+f+p Cpq++  +    +e  a                               +sEDC
  KKY23188.1  42 NSTGQFYNFSNIRYAQPPIGELRWAPPVSPTGRNTtTNDGTSFGPICPQAIPGWIIIAEEFVASyvlgttdefnytsaleaankfnatyspssgTSEDC 140
                 333499**********************9655554499************98876655544444668******************************** PP

                 -EEEEEEESSS......SSTTSSEEEEEEE--STTTS-BGCG.......S-THHHHHHHTSEEEEE----HHHHH-B-..SSTTSBS-HHHHHHHHHHH CS
  COesterase  88 LyLnvytPkek......keakkklPVlVwihGggfqtgsase.......ydgsaLaaegnvivVtinYRlGvlGFlst..gdeeapGNvGllDqvlALr 171
                 L+L++++Pk+       ++++ + PVlVw++Ggg+++gs+         +++s+  ++++vivV++nYRlG++G+ls    + + + N+Gl+Dq+lAL+
  KKY23188.1 141 LFLDIFVPKSIfdssakRKRSGGAPVLVWVYGGGYTEGSKVAngspagiIKASQANETEGVIVVAMNYRLGAFGWLSGptFSTNGTQNLGLYDQRLALE 239
                 ********9889999986666777**************995544445666777777777******************8334467777************ PP

                 HHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSGGGT..TSBSEEEEES--TTSTTTSBSHHH CS
  COesterase 172 WVkenIasFGGdpervtlfGesAGaasvsllllsplsr..glfkraIlqSGsalspwaiqkkar 233
                 WV+e+I +FGGdp+rvt++GesAG+ s+  +++    +    f++a+lqS++ + p+    ++ 
  KKY23188.1 240 WVQEHIGKFGGDPNRVTVIGESAGGGSIFHQITAFAGQkpVPFQQAVLQSAA-WLPTPSGFQQE 302
                 ****************************88877744442469********75.44444444444 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.015        92       1      40 [.     167     211 ..     167     218 .. 0.70
   2 !   26.4   0.0   9.3e-10   5.6e-06      51     110 ..     233     291 ..     222     340 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.015
                    EEEE--STTTS--TTTT...HHHH.HHHHHHH.TSEEEEEE---T CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldth...dalc.relakel.gavvvsvdYrlA 40 
                    lv++ GGG++ gs   +     ++ ++ a+e+ g++vv+++Yrl 
     KKY23188.1 167 LVWVYGGGYTEGSKVANgspAGIIkASQANETeGVIVVAMNYRLG 211
                    68899999998877555445333314455555368999*****95 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 9.3e-10
                    HHHHHHHHHHHTHHHHTETTCEEEEEEETHHH.HHHHHHHHHHHHTT---EEEEEEESE-S CS
  Abhydrolase_3  51 dalaalrwlaeqawelgadpsrivlaGdSaGG.nlaaavalrardegepkvagqvliyPvt 110
                    d   al+w++e+  ++g dp+r+++ G+SaGG  + ++++  a ++  p + +q++++ + 
     KKY23188.1 233 DQRLALEWVQEHIGKFGGDPNRVTVIGESAGGgSIFHQITAFAGQK--PVPFQQAVLQSAA 291
                    66779*******88****************8625788888777776..5666666555532 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.5e-07    0.0009      12      96 ..     198     289 ..     191     332 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.5e-07
                   CCT-EEEEE--TTSST...THCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHH....HHHHHHH-GGG-SEEEEES CS
  Peptidase_S9  12 drGyvvvvanirGsgg...yGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyl....tgaalnqrpdlFkaavaev 96 
                    +G++vv++n+r ++     G +f  +g+++lg ++ +  ++++++ + ++  d++r+ + G S+GG      + a ++q+p  F+ av + 
    KKY23188.1 198 TEGVIVVAMNYRLGAFgwlSGPTFSTNGTQNLGLYDQRLALEWVQEHIGKFGGDPNRVTVIGESAGGGSifhqITAFAGQKPVPFQQAVLQS 289
                   589*********9885444799*********************************************6511114666778888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2305.81
//
Query:       KKY23189.1  [L=346]
Description: putative beta-alanine synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-23   81.9   0.1    6.3e-23   81.6   0.1    1.1  1  Peptidase_M20  Peptidase family M20/M25/M40
    1.2e-07   31.6   0.0    2.9e-07   30.4   0.0    1.6  1  M20_dimer      Peptidase dimerisation domain
  ------ inclusion threshold ------
      0.053   13.2   0.0      0.082   12.6   0.0    1.4  1  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.1   1.1e-26   6.3e-23      34     194 ..       3     310 ..       1     320 [. 0.91

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 1.1e-26
                    TTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT.....THHHHHHH...HHHT.................................T CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxx...xxxx.................................x RF
  Peptidase_M20  34 GaddmkggvlaalealralkdegikpkgtivllfqpdEEggr.....gGakalle...glee.................................r 88 
                    G  d+  gvl+ale++r+l+++g+ + +++v + +++EEg+r      G+   ++   +  e                                 +
     KKY23189.1   3 GRFDGILGVLSALEVIRTLRERGVSLTRPLVAIDWTNEEGARfpamcTGSSVWAGtksQ--EglhelasltedgitmrrelerlkflgeipsshkA 96 
                    447777*********************************98899988666555554440..1444566777788888899999**********999 PP

                    TCESEEEEEEEESSSBTCHSTETEEEE..................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................................... RF
  Peptidase_M20  89 ekvdavfelhieepgileagklaigvv..................................................................... 115
                     ++ a felhie+   le++ + +gvv                                                                     
     KKY23189.1  97 IPLAAHFELHIEQAKRLERESKRVGVVtgiqgmrwytvvihgneghagstpmqdrqdalvaasklvlevekeakrvngfgtvgflkprsdstntii 192
                    9*********************************************************************************************** PP

                    ......................................EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSC.EEEEEESSSBHTHHHHTTT.EE CS
                    ......................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.xx RF
  Peptidase_M20 116 ......................................kvevelleggapvtlndsplvkalaeaaeelfgek.velivsgpggtdarffagi.pt 171
                                                          + e+++ +++++v ++ ++ v+ ++eaa  + g++   ++ s  +g+d++  a++ pt
     KKY23189.1 193 gevrlaidlrhpsesvldeveanfrqilkglesetigiSSEFTRTWESEAVIFD-AEAVDCVREAAAIVAGKDsCLTMYSC-AGHDSAETARViPT 286
                    ***********************************99878888889***99999.***********999898855555666.********9999** PP

                    EEEEESSG.GCTTSTTTEEEHHHH CS
                    xxxxxxxx.xxxxxxxxxxxxxxx RF
  Peptidase_M20 172 vmifgpgs.glaHspnEyvdledl 194
                    +mif+p++ g++H+p E+++ +++
     KKY23189.1 287 AMIFVPSKnGISHNPAEFTSQDQC 310
                    *****9955**********98886 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   4.9e-11   2.9e-07       2     103 ..     125     222 ..     124     227 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 4.9e-11
                 EB-EEEEEEEEEE-B-EEGG.-T.TTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHH CS
   M20_dimer   2 ghkGlaggkitvkgkagHsg.ap.gagaNAieklarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeie 98 
                 g  G+ ++++ ++g+ gH+g  p ++ ++A+ ++++l+ e e+e ++++     +  t+ +   ++ +++n+i +e+++ id+R + ++ ++ev+++++
  KKY23189.1 125 GIQGMRWYTVVIHGNEGHAGsTPmQDRQDALVAASKLVLEVEKEAKRVN-----GFGTVGFLKPRS-DSTNTIIGEVRLAIDLRHPSESVLDEVEANFR 217
                 7789****************855267778***************77765.....555555555555.59****************************** PP

                 HHHTS CS
   M20_dimer  99 eilek 103
                 +il+ 
  KKY23189.1 218 QILKG 222
                 **985 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.4e-05     0.082      37      86 ..       6      61 ..       1     122 [. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.4e-05
                   TTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSG.....SSHHHHHHHH.HHC CS
  Peptidase_M28 37 DnAsgvaalLelarvlaasgsrpkrgvrflffdaEEa.....gllGSkafak.akp 86
                   D   gv + Le++r+l ++g  ++r ++ + ++ EE       + GS+ +a  +++
     KKY23189.1  6 DGILGVLSALEVIRTLRERGVSLTRPLVAIDWTNEEGarfpaMCTGSSVWAGtKSQ 61
                   66689***************999*************999999******99965333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2211.14
//
Query:       KKY23190.1  [L=609]
Description: putative isopullulanase precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-60  201.8   7.3      2e-59  200.4   7.3    1.8  1  Glyco_hydro_49N  Glycosyl hydrolase family 49 N-terminal Ig-l
    1.7e-19   69.8   1.9    4.6e-19   68.4   0.9    2.3  2  B_solenoid_dext  Beta solenoid repeat from Dextranase
    3.4e-15   55.8   0.8    9.5e-15   54.3   0.8    1.8  1  IPU_b_solenoid   Isopullulanase beta-solenoid repeat
      4e-15   55.9   0.2    2.4e-14   53.3   0.0    2.4  2  Glyco_hydro_49   Glycosyl hydrolase family 49


Domain annotation for each model (and alignments):
>> Glyco_hydro_49N  Glycosyl hydrolase family 49 N-terminal Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.4   7.3   4.5e-63     2e-59       3     188 .]      29     238 ..      27     238 .. 0.94

  Alignments for each domain:
  == domain 1  score: 200.4 bits;  conditional E-value: 4.5e-63
                      ----BSSSEE----TTEEE-SSS---TT-EEE-SSEEEEEEETTTTSS-EEE--EEE-GGGGTGS-........-TT--GCGCCCHHHT-EEEE CS
  Glyco_hydro_49N   3 avtasgaelltWWhdngeintqtPvqdgnvrrsslysvqvataaaseklydsfvylsiPrsGkgki........dyteedgiefsssanltmaW 88 
                      + t+++++l+tWWh +ge+nt+t vq+gnvr+sslysvqv+t +   ++y+sfvy+siPr+G+g+i          t++dgi ++ +++++maW
       KKY23190.1  29 NGTVNNSQLHTWWHSTGEMNTNTSVQPGNVRQSSLYSVQVSTVSG-ATYYNSFVYESIPRNGNGNIltpndpssTTTNDDGITIEVDIGMSMAW 121
                      569**************************************9988.89************************998999**************** PP

                      EEEEESS-EEEEEEECTTTS---GGGEEEESCCC--EEEE-CTTEEEEEE---TT-EEEEEEEGGGEEEECCTSSS.................. CS
  Glyco_hydro_49N  89 ssfeyskdvtvkvslrdGssissaddvvirPsslnfevrlvdadtvrikvPysaaGyrfsvefeddlytllndGde.................. 164
                      s+f+y++dv+vkvs  dG  +++ +d+++rP+ l + v    ++ ++i+vP+s++G rfsvef d+lyt+ +  ++                  
       KKY23190.1 122 SQFLYAEDVMVKVSRLDGHQANA-SDITVRPTTLGYTVTA-QDGDIYIHVPFSSSGTRFSVEFADNLYTFRDGSTSseagyvqnsvsegysyve 213
                      *******************9998.99************99.6788************************9877444678999999****99988 PP

                      .EESSTCEEEEEEESEEEEEEEEE- CS
  Glyco_hydro_49N 165 .evasGdraihtePrnallifaePf 188
                       + +  + a+++eP n+llifa+P+
       KKY23190.1 214 sYSSVSNPAVGVEPLNSLLIFASPM 238
                      777778899**************95 PP

>> B_solenoid_dext  Beta solenoid repeat from Dextranase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.9     1e-22   4.6e-19       1      33 []     376     408 ..     376     408 .. 0.99
   2 ?   -2.1   0.0       1.1   5.1e+03       9      22 ..     563     576 ..     553     578 .. 0.69

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 1e-22
  B_solenoid_dext   1 PFNsMDfyGdsdnisvevaDYKQVGaFfgQTDG 33 
                      PFN+MD++Gd+ +++ve++DYKQVG+FfgQTDG
       KKY23190.1 376 PFNTMDWTGDMPSLRVEATDYKQVGSFFGQTDG 408
                      9*******************************9 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.1
  B_solenoid_dext   9 GdsdnisvevaDYK 22 
                      +d+++++vev+ +K
       KKY23190.1 563 PDNADAEVEVSGFK 576
                      67788888888877 PP

>> IPU_b_solenoid  Isopullulanase beta-solenoid repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.8   2.1e-18   9.5e-15       1      32 [.     444     475 ..     444     476 .. 0.98

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 2.1e-18
  IPU_b_solenoid   1 WKtntAPivqfGWysRnltNitVdhVdvIHsr 32 
                     WK +tAP+ qfGW+sR l+NitV++V++IHsr
      KKY23190.1 444 WKCTTAPVLQFGWQSRSLNNITVSDVNIIHSR 475
                     *******************************8 PP

>> Glyco_hydro_49  Glycosyl hydrolase family 49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.52   2.3e+03      81      99 ..     460     478 ..     405     489 .. 0.72
   2 !   53.3   0.0   5.4e-18   2.4e-14       3     106 ..     497     599 ..     494     607 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.52
                     EEEEEEETTEE--TTT-ST CS
  Glyco_hydro_49  81 klenytvGgqkitaenfsa 99 
                     +l+n tv +++i  + ++ 
      KKY23190.1 460 SLNNITVSDVNIIHSRWNS 478
                     5666666666665555554 PP

  == domain 2  score: 53.3 bits;  conditional E-value: 5.4e-18
                     T-BBEEEEEEEEEEEEEEEEECCE-ECEEE--SEEEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT...B..EEEEEEEEEEETTEE--TTT CS
  Glyco_hydro_49   3 sttadsnktvknltlenvaveGltnalvRiyalqnlenisiknvnieafegLeigtqeshlkrysdlanek.vidstglklenytvGgqkitaen 96 
                     +++a+  +tv+nl + n + eGlt  ++Ri++lqnl ni+++ + i  f +  +g   s ++  +d  n    +++ g+k+ ++ vG +k+t +n
      KKY23190.1 497 TSSANISMTVSNLSFLNWRSEGLTGPIFRIHPLQNLVNITLQSFWIAEFSPEILGIPFSKMPMLTDPDNADaEVEVSGFKVVDHMVGSTKLTEDN 591
                     5899**************************************************************9887659********************** PP

                     -STTTTT-EE CS
  Glyco_hydro_49  97 fsaaslGrld 106
                       aa  G ld
      KKY23190.1 592 --AAGTGLLD 599
                     ..66666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 4691.90
//
Query:       KKY23191.1  [L=195]
Description: hypothetical protein UCRPC4_g02976 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0061   16.8   0.1      0.011   15.9   0.1    1.4  1  Retrotrans_gag  Retrotransposon gag protein


Domain annotation for each model (and alignments):
>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   6.4e-07     0.011      30      77 ..      24      72 ..       9      88 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.4e-07
  Retrotrans_gag 30 kdlkkaflktflpserkdqleeelsslrQ.gtesvreYvtrfktladql 77
                    + + +af+k  l+++r+  +  +l++l+Q +++ ++eY++ ++++++ l
      KKY23191.1 24 QYIADAFKKALLDPIRRVHASVKLHHLKQmDEQPFSEYYALHRHYLTAL 72
                    56779***********************************999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1447.23
//
Query:       KKY23192.1  [L=1039]
Description: putative nuclear condensin complex subunit 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-85  284.4   2.6    1.2e-83  280.8   1.6    2.7  2  Cnd3      Nuclear condensing complex subunits, C-term domain
    4.9e-08   33.2  12.1      0.015   15.7   1.8    5.2  4  HEAT_2    HEAT repeats
    9.6e-08   31.7   3.4       0.48   10.8   0.0    6.2  6  HEAT      HEAT repeat
    0.00059   19.9   0.8       0.13   12.3   0.0    4.1  4  Cnd1      non-SMC mitotic condensation complex subunit 1
  ------ inclusion threshold ------
      0.035   14.6   7.9         27    5.4   0.2    6.1  5  HEAT_EZ   HEAT-like repeat


Domain annotation for each model (and alignments):
>> Cnd3  Nuclear condensing complex subunits, C-term domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.042   1.5e+02      43     134 ..     116     203 ..      89     214 .. 0.45
   2 !  280.8   1.6   3.2e-87   1.2e-83       1     293 [.     565     887 ..     565     888 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.042
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHS.-HHHHHHHHHHHHHHHHHH-CGGGGGGHH..............HHHHHHHHHHC-TT-H CS
        Cnd3  43 relglkcLglfclldkklakenlklflqalskg.neelkiialkaifDllllhglevldkekkedsdeeeeesessksllkllykaLdsednp 134
                 r ++    + +    +++  e   l++q+l k   ++   i ++a++ l  l g e  ++e++ed +     +++s+ ll  l++aL+++ ++
  KKY23192.1 116 RYRATQIISHVINTLESIDDELYHLIRQSLMKRiRDKEPTIRIQAVMGLGRLAGNEAEEDEDDEDGE-----DVDSSGLLGKLLDALQNDTSA 203
                 4444444444444444444444444444444333444444444444444444444333333332222.....122334555555555544444 PP

  == domain 2  score: 280.8 bits;  conditional E-value: 3.2e-87
                 HHHHHHHHHHHT--S-TTSCCHHHHHHHHTHHHHHC-SSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHH-CGGG CS
        Cnd3   1 rcLaitqelLenvsssleenpsleslleslilpavrskeaairelglkcLglfclldkklakenlklflqalskgneelkiialkaifDllllhglevl 99 
                 +cL+i+q++L+nv+++l++n+sl+++l++l++pavrs+ea+ire+gl cLgl++lld++la+en++lf++++skg+e+l++++l++++D+l +h++ + 
  KKY23192.1 565 KCLHIAQCMLQNVDGNLQQNISLVTMLNNLVVPAVRSHEAPIRERGLFCLGLCSLLDRTLAEENITLFIHCFSKGHEALQVTSLQILCDILVTHPTLLS 663
                 8***********************************************************************************************999 PP

                 GGGHH...............HHHHHHHHHHC.-TT-HHHHHHHHHHHHHHHHHH--.....SHHHHHHHHHHHHH-GGGTT-HHHHHHHHHHHHHHHCC CS
        Cnd3 100 dkekkedsd.eeeeesessksllkllykaLd.sednpelqaiaaeglcKLllagil.....tdselLsrLvllyFnpeteenqrLrQcLsvffpvYafs 191
                  +e++++ d   ++   ++k+llk +++aL+ +++ p +qa+aa+ l+K+ll+++l     + ++lL++Lv+++Fnp+t++n++LrQ L++f+p+Ya s
  KKY23192.1 664 PTESQDEGDnPATSVPAHQKPLLKAFTRALKpTNSAPAVQAAAATSLSKMLLTSRLlvpcaSLDDLLRTLVVAFFNPATADNPALRQSLAYFLPAYALS 762
                 99988777655555559**************76667********************999975557********************************** PP

                 -HHHHHHHHHHHHHHHHHHHHHCH--....................-SHCHHHHHHHHHHHHT-GGGS---------TT..........--HHHHHHHH CS
        Cnd3 192 spknqellaeiflptlrtllnapeespla.................eeevspskvleqlvdltdprklvnkteeeeskseseke.....eelhldlale 268
                 + +n e++ ++++ ++++++ a++e++                   + +  + +v+  l ++td rk+v+   +  ++ + +++     e+l+l +a++
  KKY23192.1 763 RLENCERMNRVAVGVVHQVMVAADEYYTLeaeedsdgdvdetqaekQVKALMGTVVGILSEWTDGRKVVSIGADRVEAASEKSStnskgENLQLGVAID 861
                 ******************888888887668999999999999876666667778888888*********9988877776544447789*********** PP

                 HHHHCCCS-T.HH.HHHHHHHHHH-- CS
        Cnd3 269 ilkelekkes.keekkaliklLskle 293
                 il++ +++++ ++ekk+l++ L+kl+
  KKY23192.1 862 ILERALSNSChSQEKKYLLNFLGKLS 887
                 **********8779**********97 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   3.2e-05      0.11       4      63 ..     104     172 ..     101     181 .. 0.76
   2 !   15.7   1.8   4.1e-06     0.015       3      83 ..     192     276 ..     190     280 .. 0.83
   3 ?    1.0   0.1      0.15   5.5e+02      57      87 ..     445     476 ..     409     501 .. 0.72
   4 !    6.2   0.1    0.0037        13      32      58 ..     685     713 ..     678     734 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.2e-05
      HEAT_2   4 LlqalendpdpevrraairaLg.......rignpea....lpaLvellededpavRraaaeaLgaigdpea 63 
                 L+ +l + +++ vr++a + +        +i+++ +    ++ L + ++d++p +R +a++ Lg+++ +ea
  KKY23192.1 104 LIPLL-SAKEKTVRYRATQIIShvintleSIDDE-LyhliRQSLMKRIRDKEPTIRIQAVMGLGRLAGNEA 172
                 78888.8899999999999999544444333333.24555899999999***************9976544 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 4.1e-06
      HEAT_2   3 aLlqalendpdpevrraairaLgrignpealpaLvellededpavRraaae....aLgaigd..pealpaLkellddddddvvReaA 83 
                 +Ll al+nd + evrr  + +L    +p++lp+L+e ++d d  +Rra       +Lg +++   +  + L+++ ++d+d+ vR aA
  KKY23192.1 192 KLLDALQNDTSAEVRRSLLLNLPL--TPSTLPYLLERARDLDGPTRRALYArllpTLGDFRHlsLSMREKLLRWGLRDRDENVRKAA 276
                 699*******************96..7779**********99888888876344455777743366889999999999**999*998 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.15
      HEAT_2  57 aigdpealpaLkelldddd.ddvvReaAaeaL 87 
                 +ig+ +  ++L+e+l+  d  d+v + A+e L
  KKY23192.1 445 EIGRRKMFSLLREALAMADlPDEVTRLAIEVL 476
                 56666666666666555443344444455554 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0037
      HEAT_2  32 alpaLvell..ededpavRraaaeaLgai 58 
                 +l+a++++l  +++ pav++aaa++L+++
  KKY23192.1 685 LLKAFTRALkpTNSAPAVQAAAATSLSKM 713
                 588999999666677***********998 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.022        78       1      26 [.     100     125 ..     100     130 .. 0.87
   2 !   10.8   0.0   0.00013      0.48       4      28 ..     144     168 ..     141     170 .. 0.91
   3 !    6.6   0.1     0.003        11       2      24 ..     190     213 ..     189     214 .. 0.86
   4 ?    3.9   0.0     0.022        79       6      23 ..     261     279 ..     258     282 .. 0.80
   5 ?   -2.6   0.0       2.8     1e+04       6      25 ..     596     615 ..     592     617 .. 0.78
   6 ?    0.4   0.0      0.29   1.1e+03      12      27 ..     698     713 ..     692     715 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.022
                 HHHHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLga 26 
                 +l +l+ lls ++  VR+ A + + +
  KKY23192.1 100 VLSMLIPLLSAKEKTVRYRATQIISH 125
                 5889****************998766 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00013
                 HHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgala 28 
                  l+k ++D++p +R  A+  Lg+la
  KKY23192.1 144 SLMKRIRDKEPTIRIQAVMGLGRLA 168
                 68999******************98 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.003
                 HHHHHHHH.T-SSHHHHHHHHHHH CS
        HEAT   2 lPlllkll.sDpspeVReaAakaL 24 
                 l  ll +l +D+s+eVR++ +++L
  KKY23192.1 190 LGKLLDALqNDTSAEVRRSLLLNL 213
                 667899999*********988876 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.022
                 HHH.HT-SSHHHHHHHHHH CS
        HEAT   6 lkl.lsDpspeVReaAaka 23 
                 l++ l+D + +VR+aA + 
  KKY23192.1 261 LRWgLRDRDENVRKAAGRL 279
                 566589*********9765 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 2.8
                 HHHHT-SSHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLg 25 
                 + + ++ ++ +Re  + +Lg
  KKY23192.1 596 VPAVRSHEAPIRERGLFCLG 615
                 56667788889999999998 PP

  == domain 6  score: 0.4 bits;  conditional E-value: 0.29
                 SSHHHHHHHHHHHHHH CS
        HEAT  12 pspeVReaAakaLgal 27 
                 ++p V +aAa +L ++
  KKY23192.1 698 SAPAVQAAAATSLSKM 713
                 6899********9887 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   3.6e-05      0.13      23      78 ..     142     209 ..     126     214 .. 0.77
   2 ?    1.6   0.0     0.072   2.6e+02      25      41 ..     260     276 ..     236     280 .. 0.84
   3 ?   -2.0   0.0       0.9   3.2e+03      24      51 ..     687     716 ..     676     734 .. 0.58
   4 ?    0.3   0.0      0.17   6.2e+02      86     124 ..     848     884 ..     840     891 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.6e-05
        Cnd1  23 vepLrkrLkDedpyVRktaaivvakL.......ilndm.......vkekgflselakll.eDenprVvana 78 
                  + L kr++D++p++R +a++++ +L                   v ++g+l +l+++l +D++++V+ + 
  KKY23192.1 142 RQSLMKRIRDKEPTIRIQAVMGLGRLagneaeeD---EddedgedVDSSGLLGKLLDALqNDTSAEVRRSL 209
                 57899*********************66553330...1233333477889999999999889999988765 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.072
        Cnd1  25 pLrkrLkDedpyVRkta 41 
                  Lr +L+D+d+ VRk a
  KKY23192.1 260 LLRWGLRDRDENVRKAA 276
                 47889**********98 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.9
        Cnd1  24 epLrkrLk..DedpyVRktaaivvakLiln 51 
                 +  +++Lk   + p V+  aa  ++k++l 
  KKY23192.1 687 KAFTRALKptNSAPAVQAAAATSLSKMLLT 716
                 444555541134577888888888888433 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.17
        Cnd1  86 seksenaiynllpdiisklsdalnecsewgqitilefLl 124
                 ++k+en+ + + +di+ + +   n+c+ ++ ++ l+fL 
  KKY23192.1 848 NSKGENLQLGVAIDILERAL--SNSCHSQEKKYLLNFLG 884
                 56778999999*******99..57************996 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.045   1.6e+02      19      53 ..      89     124 ..      78     126 .. 0.78
   2 ?    5.4   0.2    0.0077        27       2      45 ..     155     206 ..     154     210 .. 0.58
   3 ?    0.1   0.0      0.35   1.3e+03      37      52 ..     265     280 ..     260     282 .. 0.83
   4 ?   -1.5   0.0       1.1   3.8e+03       2      34 ..     605     633 ..     604     637 .. 0.84
   5 ?    3.6   0.3     0.027        96      26      55 .]     682     713 ..     673     753 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.045
     HEAT_EZ  19 pellqp.lvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 pe+ ++ l   +l  L++lL+ ++++VR+ A   ++
  KKY23192.1  89 PETPSTrLTFSVLSMLIPLLSAKEKTVRYRATQIIS 124
                 555555566778899**************9987765 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0077
     HEAT_EZ   2 rvRraAawaLGrlaggepellqp.......lvpeilpaLlalLnddsd.eVR 45 
                  +R  A+++LGrlag+e+e +++         + +l  Ll +L++d + eVR
  KKY23192.1 155 TIRIQAVMGLGRLAGNEAEEDEDdedgedvDSSGLLGKLLDALQNDTSaEVR 206
                 57999*******6666555433222233455555666666666444443665 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.35
     HEAT_EZ  37 LnddsdeVRaaAagaL 52 
                 L+d + +VR+aA + +
  KKY23192.1 265 LRDRDENVRKAAGRLF 280
                 888999******8876 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.1
     HEAT_EZ   2 rvRraAawaLGrlaggepellqplvpeilpaLl 34 
                 ++R+ ++ +L    g ++ l+++l +e + +++
  KKY23192.1 605 PIRERGLFCL----GLCSLLDRTLAEENITLFI 633
                 689999999*....7889999999888888876 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.027
     HEAT_EZ  26 vpeilpaLlalL..nddsdeVRaaAagaLgnl 55 
                 ++ +l+a+ ++L  +++ ++V+aaAa  L+++
  KKY23192.1 682 QKPLLKAFTRALkpTNSAPAVQAAAATSLSKM 713
                 55566666666643344447777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1039 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       840  (0.0468515); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.50
# Mc/sec: 6304.77
//
Query:       KKY23193.1  [L=596]
Description: putative rna binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-09   37.1   7.9    4.9e-09   35.3   2.2    2.4  2  zf-RanBP  Zn-finger in Ran binding protein and others
    1.4e-07   31.2   0.0    2.5e-07   30.4   0.0    1.4  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
    2.9e-07   31.2   0.0    4.8e-07   30.5   0.0    1.3  1  RNase_T   Exonuclease


Domain annotation for each model (and alignments):
>> zf-RanBP  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.3    0.0027        16       1       9 [.     352     360 ..     352     360 .. 0.89
   2 !   35.3   2.2   8.3e-13   4.9e-09       1      29 [.     409     439 ..     409     440 .. 0.96

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0027
                 GSSSEE-SS CS
    zf-RanBP   1 regdWdCsk 9  
                 r gdW+C++
  KKY23193.1 352 RPGDWTCPS 360
                 78*****96 PP

  == domain 2  score: 35.3 bits;  conditional E-value: 8.3e-13
                 GSSSEE-..SSS--EEESSSSB-TTT--BTS CS
    zf-RanBP   1 regdWdC..skClvqNfawstkCvaCqapkp 29 
                 r+gdW+C    C+++Nfa++++C++C+a+++
  KKY23193.1 409 RAGDWKCgqEGCNYHNFAKNVTCLRCGASRS 439
                 89**************************996 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   4.2e-11   2.5e-07       3      69 ..     257     324 ..     255     325 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 4.2e-11
                 EESETTTSSHHHHHHHHHTTSCE.EEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   3 VgnLppdvteeeLkelFskfGpi.ksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +++Lp+d+t++eL+ +F +fG+    +   ++  ++k++g +f  F s+e+A++ l  +ng+ l+ + +
  KKY23193.1 257 MNGLPHDTTQSELESWFTQFGGRpIAFWTLKTpDQHKPTGSGFAVFSSHEEAAESLC-MNGRALNEKAI 324
                 689****************9987688888888************************9.*****999987 PP

>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0     8e-11   4.8e-07       7     116 ..      21     138 ..      16     189 .. 0.74

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 8e-11
                 ESSSTT.....CTTS-EEEEEEEEEETTCCEEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHHHTCCCETTTCEEEESSH CS
     RNase_T   7 ttglda.....kekdeiieiaaisidggeneigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrklallvahnaafdvgflr 100
                 tt+ ++     k   e+ie++ i +d++  e+  + +++vkp++   +t+ ct++t  t +++++a+sf +++++f+ + + ++ll ++  + +v+   
  KKY23193.1  21 TTCDEHgvyvtKDSAEVIELGWILLDTKSLEELHRESILVKPVNT-PITPLCTSLTTLTWDHVKNAGSFRDAINRFDAFAQ-EHLLSKNLDFSFVTLDA 117
                 5666666777756899****************************8.9**********************************.88888755888888777 PP

                 HHHHHHHHHHHH.....HHHH CS
     RNase_T 101 aadkrilkkevp.....krnq 116
                 ++++  l +e+        ++
  KKY23193.1 118 WDLRVQLPREARdkavvLPPY 138
                 777777776666666653333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 4752.23
//
Query:       KKY23194.1  [L=395]
Description: putative f-box domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 2369.82
//
Query:       KKY23195.1  [L=646]
Description: putative phospholipid:diacylglycerol acyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-104  350.5   0.0   1.6e-104  350.2   0.0    1.1  1  LCAT      Lecithin:cholesterol acyltransferase
     0.0065   16.0   0.1      0.016   14.7   0.1    1.6  2  Lipase_2  Lipase (class 2)
  ------ inclusion threshold ------
      0.095   11.8   0.0       0.15   11.1   0.0    1.2  1  DUF1749   Protein of unknown function (DUF1749)


Domain annotation for each model (and alignments):
>> LCAT  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.2   0.0  2.6e-108  1.6e-104       1     390 [.     159     606 ..     159     608 .. 0.94

  Alignments for each domain:
  == domain 1  score: 350.2 bits;  conditional E-value: 2.6e-108
        LCAT   1 yFrkelWldldmllslvvd..cwlknlelvldkstglqedapgvkiRadqGfeaieyldkskiagkqyeiwkklvknlvkiGyeknktvvaapYDWRls 97 
                 yFrk+lW++++m+++lv+d   w    +++ldk+tgl  d+pg+k+Ra+qGf a++++    i+g  y+iw+k+++nl+ iGy + +  + a+YDWRls
  KKY23195.1 159 YFRKRLWGSWSMMRALVLDkaSWKR--HIMLDKETGL--DPPGIKLRAAQGFDAADFF----ITG--YWIWNKILENLATIGYDPTN-AFTAAYDWRLS 246
                 9******************988888..**********..*******************....***..******************99.9999******* PP

        LCAT  98 ...leerdkYfskLkelieealklsgkkvvliaHSmGnllvlyflkwveaea.......WvdqhikafislgapllGsvkavkallsGenkgipvlsel 186
                    le rd+Yf++Lk+ ie   ++sgkkvv+++HSmG+++++yf+kwve+         Wv++hi+a++++++ +lG++k v+a+lsGe+k++++l+ +
  KKY23195.1 247 ymnLEVRDQYFTRLKSYIEVGVHTSGKKVVIVSHSMGSQVLFYFFKWVENPSygnggsdWVEKHIEAWVNISGCMLGALKGVPAVLSGEMKDTAQLNAF 345
                 **9********************************************9998899********************************************* PP

        LCAT 187 tlrvlsksfsss............lsllPkgeevlwkdvawpsdeiliqtpsinltegalvrf........................fsdevdlkdlls 249
                 ++++ +k+ s+             +s+lPkg+e +w+++ w++d+     p  n+++g++++f                         s++++++++ls
  KKY23195.1 346 AVYGTDKFLSKEeraeiframpgiSSMLPKGGEAVWGNATWAPDD--DAPPRQNVSYGPFINFqaekvsdeakkqgnssinngdihiPSKNLTVSEALS 442
                 ***********99*****************************999..5566789*************************999998887789******** PP

        LCAT 250 ftlnvlagwvmvkvaedldgglsklekelkk..lkkkkyvkeeetklpeaPgvkvyciygvglptergyvyapekkssplny..il....sdidyetee 340
                 ++   ++ w++ +  + +++g++++e+e+ +   ++  + ++ e++lp aP +k+yc yg+g+ptergy y++++++   n+  ++    +  d+++++
  KKY23195.1 443 YLWDHSDPWYQDMIRHSYSHGVAHTEAEVIRndNRPTTWLNPLEARLPLAPSMKIYCFYGIGKPTERGYFYKKSDNPLSPNLnvTIdttfTTGDGQVDH 541
                 *****************************9989999**************************************9986544311321111566788999 PP

        LCAT 341 sivskdGdetvpkeslel.Ckk.Wqd....nkakvkvtvaelkeek.........rsaehvellv 390
                 +++ ++Gd+tv++ s+   C k W+d    n+a++kvt +e+++e+         +  +hv++l+
  KKY23195.1 542 GVIFGEGDGTVNLLSTGYmCAKgWRDvkryNPAGIKVTSYEMPHEPdrfsprggpNTGDHVDILG 606
                 ***************9976**99****************************99999999***997 PP

>> Lipase_2  Lipase (class 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.79   4.7e+03       2      25 ..     134     160 ..     133     164 .. 0.60
   2 !   14.7   0.1   2.7e-06     0.016      18      89 ..     219     287 ..     214     331 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.79
    Lipase_2   2 ePviivhGnsdlaaekl...skliqkf 25 
                 +Pvi++ G+ ++  e++   ++++q+f
  KKY23195.1 134 HPVIMIPGVISTGLESWgtdEQSRQYF 160
                 79*****99865555552213344444 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 2.7e-06
    Lipase_2  18 lskliqkflekgyteaelYattygdteestslerlekCeyvkqlRklilaVlkyTgakkvdivahsmGvpia 89 
                 ++k+++++ + gy   + ++  y+ + +  +le  +  +y ++l++ i+ V   T  kkv iv+hsmG+ + 
  KKY23195.1 219 WNKILENLATIGYDPTNAFTAAYDWRLSYMNLEVRD--QYFTRLKSYIE-VGVHTSGKKVVIVSHSMGSQVL 287
                 889999999***********9999888855555555..9********98.56666666***********986 PP

>> DUF1749  Protein of unknown function (DUF1749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.6e-05      0.15      96     126 ..     259     293 ..     248     320 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.6e-05
     DUF1749  96 ktk....sG.eekkekvvlmGHstGsqdvlyYltss 126
                 + k     G +++ +kvv++ Hs Gsq vl+Y  + 
  KKY23195.1 259 RLKsyieVGvHTSGKKVVIVSHSMGSQ-VLFYFFKW 293
                 44444455778999************9.55555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.49
# Mc/sec: 3954.78
//
Query:       KKY23196.1  [L=814]
Description: putative cellobiose dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-53  178.8   8.3    8.2e-53  178.8   8.3    3.9  5  CDH-cyt        Cytochrome domain of cellobiose dehydrogenase
    1.9e-25   89.8   0.0    3.7e-25   88.9   0.0    1.5  1  GMC_oxred_N    GMC oxidoreductase
    3.4e-21   76.3   0.0    7.9e-21   75.1   0.0    1.6  1  GMC_oxred_C    GMC oxidoreductase
    1.8e-08   33.9   0.3    5.3e-08   32.4   0.3    1.8  1  FAD_binding_2  FAD binding domain
    7.1e-06   25.0   0.7    5.3e-05   22.1   0.1    2.2  2  HI0933_like    HI0933-like protein
    1.2e-05   24.8   0.4     0.0023   17.3   0.7    2.3  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    2.3e-05   23.6   0.0    4.8e-05   22.6   0.0    1.5  1  Lycopene_cycl  Lycopene cyclase protein
      4e-05   23.0   0.0    0.00018   20.8   0.0    2.0  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    7.2e-05   22.2   0.3    0.00012   21.4   0.3    1.3  1  FAD_binding_3  FAD binding domain
    0.00019   21.6   0.1    0.00048   20.3   0.1    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00055   19.6   5.3      0.011   15.3   5.2    2.2  1  DAO            FAD dependent oxidoreductase
     0.0059   15.9   0.2      0.012   14.8   0.2    1.4  1  Thi4           Thi4 family
  ------ inclusion threshold ------
      0.011   15.1   0.8      0.021   14.2   0.5    1.6  2  FAD_oxidored   FAD dependent oxidoreductase
      0.056   12.5   0.1      0.094   11.8   0.1    1.3  1  GIDA           Glucose inhibited division protein A
      0.077   13.0   0.1       0.18   11.8   0.1    1.6  1  NAD_binding_9  FAD-NAD(P)-binding
       0.13   11.9   0.0       0.32   10.6   0.0    1.7  1  ApbA           Ketopantoate reductase PanE/ApbA
       0.18   11.2   0.0       0.31   10.4   0.0    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
       0.18   12.4   1.1       0.54   10.9   0.3    2.2  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> CDH-cyt  Cytochrome domain of cellobiose dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.8   8.3   8.2e-56   8.2e-53       1     181 [.      22     198 ..      22     199 .. 0.95
   2 ?   -3.9   4.8       9.5   9.4e+03      69     113 ..     200     244 ..     198     249 .. 0.73
   3 ?   -3.2   0.0       5.7   5.7e+03      53      67 ..     321     336 ..     312     341 .. 0.77
   4 ?   -2.3   0.0         3     3e+03      27      79 ..     504     555 ..     493     565 .. 0.77
   5 ?    3.1   0.2     0.066        65      72     111 ..     669     708 ..     663     714 .. 0.84

  Alignments for each domain:
  == domain 1  score: 178.8 bits;  conditional E-value: 8.2e-56
                 EE-TTT--EEEEETT-SS-EEEEEEB-CCCTS--SEEEEEEEEE-GCS--EEEEESSSSSCTSEEEEEEEETTEEEEEEEEBSSSSS-EE--SS-.EEE CS
     CDH-cyt   1 ytdpatgitFqtytdeaggftfgialPedattdatefigqlvaplsakagWaGislggsMtnnlLlvaWpngnevvtSfrlatgyasPevytgda.klt 98 
                 ytd++t+itF++ytd+++g+  g+a+Pe+     t+fi  +vapls+++gWaGi +g +M+++lL vaWp+gn+vv+Sfr atgy+sP+vy++++ +++
  KKY23196.1  22 YTDSNTNITFAAYTDSTTGYMCGFAMPETI---DTDFIATVVAPLSNGTGWAGIDFGAAMVGHLLAVAWPDGNTVVSSFREATGYTSPSVYENSSmSIS 117
                 9**************************988...89**********868*******************************************88767*** PP

                 EEE..EEE-SSEEEEEEEEET-SEEEETTEEEE--TTTEEEEEEEEESS--BSTTSCCCB-----SEEEEEEEE--CCB-TTHH CS
     CDH-cyt  99 qls.gtsvnathftltfrCqgClsweqggtsgsastssnlvlgwAqskkaptnpaspdstlsqHdngfgqfgadlsaaksasYe 181
                 +++ gt+vn+ h+++tf C gC++ + + t +s++  +++v+gwA+s++a+++p++++s+l++H++g+gqfg+++s+a+sa+Y+
  KKY23196.1 118 PIEaGTFVNSSHMSWTFVCGGCVTND-SFTFSSND--TESVFGWAFSTTAVSDPSDSSSALTMHSAGYGQFGLTFSDAQSAHYS 198
                 *************************6.66666666..7889******************************************8 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 9.5
                 EEE.TTEEEEEEEEBSSSSS-EE--SS-EEEEEE.EEE-SSEEEEE CS
     CDH-cyt  69 Wpn.gnevvtSfrlatgyasPevytgdakltqlsgtsvnathftlt 113
                 W+   +++ + ++ +tg++s +  tg ++   +  t++++t + ++
  KKY23196.1 200 WAAmATTASSNSTTSTGSTSNSTSTGRTSSANIT-TTTSNTTYDYI 244
                 6664555566677888999999999999999998.66666666665 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 5.7
                 EEESS.SSSCTSEEEE CS
     CDH-cyt  53 Gislg.gsMtnnlLlv 67 
                 G  lg gsM+n+l+ v
  KKY23196.1 321 GCLLGgGSMVNALMYV 336
                 66666589****9987 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 3
                 -CCC.TS--SEEEEEEEEE-GCS--EEEEESSSSSCTSEEEEEEEETTEEEEEE CS
     CDH-cyt  27 Peda.ttdatefigqlvaplsakagWaGislggsMtnnlLlvaWpngnevvtSf 79 
                 P+d+ +t ++++ g ++ p+s  + W+ + +g + +++++l++  n ++ +tS+
  KKY23196.1 504 PTDQiETVQSALSGSVTLPAS--SSWIDLPVGVGLKDHPILTVLLNTTSNLTSL 555
                 555656666666666677776..9999999999999999999998888777775 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.066
                 TTEEEEEEEEBSSSSS-EE--SS-EEEEEE.EEE-SSEEE CS
     CDH-cyt  72 gnevvtSfrlatgyasPevytgdakltqlsgtsvnathft 111
                 +n+ ++++ la+g+  P+ ytg+  +t l++t ++  h+ 
  KKY23196.1 669 SNSSTLTALLADGSKVPSNYTGTELYTNLKTTLTSGAHYV 708
                 5777888999********************8888878876 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.0   3.7e-28   3.7e-25       1     295 [.     241     540 ..     241     541 .. 0.79

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 3.7e-28
  GMC_oxred_N   1 vdelveggGsagsvvAaRLsedpstsvlvleaggreknrl....imvlalalklidkklntayetepekalngrrlil.paGktlGGgsvvNwsayiR 93 
                  +d++++g+G ag  vA+R++e ++ svl++e g   +  +        ++++++ d  +  +y+t ++ +++  + +  +aG  lGGgs+vN+ +y++
   KKY23196.1 241 YDYIIVGAGPAGLIVAERIAETGA-SVLLVERGEASTYSTggtdLVSWNDTVTQYDVPALAYYLTSASDTSEYCTDTAdQAGCLLGGGSMVNALMYVK 337
                  79*******************985.788888887766666355555556666666666667777777776665443332599**************** PP

  GMC_oxred_N  94 tpaadld.eWeeeaglegwssdevlpafkkvetaqalesdlhgvdgrlgvtekgkeesplnkallkaaeelGlp...vprdlngkhqcGvcllgvtcr 187
                  +p++d+d +W +      w+s +v++a +++          +     ++ ++  ++ +++ ++l +   + G++     +d+++ +++ +++ +++  
   KKY23196.1 338 PPKHDFDdKWPTG-----WKSSDVADAEDRLY--------ARNPGTLMSSADGKRYDQGAYDVLSSFLSSSGWSsidALEDVES-KHDVFSHPPWNIH 421
                  ******7359988.....**************........444456666688889999999999999*******6555555555.5667999999*** PP

  GMC_oxred_N 188 tgarqstarawLrpalerpnleiltgakaekiilegrkkravGVeasdkkgt..vkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkevg..... 278
                  +++r +  +++L+ a e  n ++  ++k+ + + +  ++ + G+e++++++t  + +++ +  +v++aaGal++P  L +SG+G+ ++++ v+     
   KKY23196.1 422 QHERGGPVKTYLPLAEELSNFHLRLNTKVVRAVRN--STWISGIEVETSGTTheIINITPSTGKVILAAGALSTPRTLIYSGIGPTDQIETVQsalsg 517
                  ********************************777..9**************555555667889************************8876522222 PP

  GMC_oxred_N 279 .v.....dvvvdlpvGknLqdHp 295
                   v     +  +dlpvG  L+dHp
   KKY23196.1 518 sVtlpasSSWIDLPVGVGLKDHP 540
                  22111112346777777777777 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0   7.9e-24   7.9e-21      24     144 .]     646     766 ..     632     766 .. 0.86

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 7.9e-24
                  TT-SHHHHHHHHHHHHHHHHHCTSGGGTTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B-STCGC.....BSB-TTSBBTT-CS CS
  GMC_oxred_C  24 ylsdprdlaalvealkaarkilaaaaldvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMGadpkd.....sVVDsdlrvhgvdn 116
                  +l+++ d++a   ++  + ++++++        lt+  a+ ++  ++++ ++l + +k++ +++aH +Gt++MG+d+ +     sVVD++++v+g+dn
   KKY23196.1 646 WLKTQGDIEAYEIFFDRLLNMTRSN-----SSTLTALLADGSKVPSNYTGTELYTNLKTTLTSGAHYVGTAKMGTDDGRinngtSVVDTNTKVYGTDN 738
                  5666777777777777777777777.....35555666666666677777788888999999***************999****************** PP

                  EEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C 117 LrVvDaSvfPsapganptltilalAeka 144
                  L+VvDaS+ P+ p++n+++ i++ Aeka
   KKY23196.1 739 LFVVDASIHPDLPTGNTQAIIMVAAEKA 766
                  **************************97 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.3   5.4e-11   5.3e-08       1     204 [.     242     493 ..     242     523 .. 0.65

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 5.4e-11
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHT..TT-S-HHHHHHHHH.THHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkal..deladqplveafve.aapeav 93 
                    D i++G+G AGL  A ++ae G++v++ve +++    +++s Gg d+v+  ++   +  d + + ++++ +a+   e +   + +a++   ++ +v
     KKY23196.1 242 DYIIVGAGPAGLIVAERIAETGASVLLVERGEA----STYSTGGTDLVS-WNDTVTQY-D-VPALAYYLTSASdtSEYCTDTADQAGCLlGGGSMV 330
                    88******************************7....************.55534433.5.55555555555544455566666666666777888 PP

                    HHHHHT...T----B............CCTSSB-EEE-TT-SST.......................................EEEE-.STT-... CS
  FAD_binding_2  94 deLeel...gvpfsr............tedgpvdvrelGglsat.......................................artlhdaadarre 135
                    + L+       +f+             +++ ++++r  G+l                                          ++ +++  ++   
     KKY23196.1 331 NALMYVkppKHDFDDkwptgwkssdvaDAEDRLYARNPGTLMSSadgkrydqgaydvlssflsssgwssidaledveskhdvfSHPPWNIHQH--- 423
                    887766555444444545455544444333366666666655557777777777777777777777788888888766666553333333333... PP

                    ...HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEE...EEE.ES.EEEE-----GG CS
  FAD_binding_2 136 tlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrev...rir.ak.avvlatgGfgr 204
                    + +   +   +l+e++   + +++ +t++++ ++++  ++G++ve  +sg+++    i+ ++ +v+la+g+ + 
     KKY23196.1 424 ERGGPVKTYLPLAEEL--SNFHLRLNTKVVRAVRNSTWISGIEVE--TSGTTHeiiNITpSTgKVILAAGALST 493
                    1222233444445555..337788888888888877788888888..444444112332123567777777665 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   5.3e-08   5.3e-05       2      33 ..     242     273 ..     241     277 .. 0.93
   2 ?    0.7   0.0      0.16   1.6e+02     126     170 ..     454     496 ..     436     521 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 5.3e-08
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekak 33 
                  d i++G+G+AGl  A+++a++g++Vll+e+++
   KKY23196.1 242 DYIIVGAGPAGLIVAERIAETGASVLLVERGE 273
                  78***************************986 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.16
                  EE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS-GGG CS
  HI0933_like 126 lrletevksvekeedgkfrvktkseeeleadklvlAtGGlSiPkl 170
                  +r +t ++++e e++g  + ++  + + ++ k++lA G lS P++
   KKY23196.1 454 VRNSTWISGIEVETSG-TTHEI-INITPSTGKVILAAGALSTPRT 496
                  3444455666666666.44444.456677889***********97 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.7   2.3e-06    0.0023       1      33 [.     244     275 ..     244     280 .. 0.93
   2 ?    4.8   0.0     0.014        14      77     147 ..     423     503 ..     385     516 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.3e-06
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkgnig 33 
                  iI+GaGPaGl +a  + + g  ++l +E+g+++
   KKY23196.1 244 IIVGAGPAGLIVAERIAETGA-SVLLVERGEAS 275
                  8********************.7*******876 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.014
  Pyr_redox_3  77 klsrkealeYlrevaksfelpiklfeeVesvkked...egfevetske.......tyeAkkviiAtGefdkPnklnipGee 147
                  + ++  +  Yl    +  + + +l+++V +  +++   +g evets         t ++ kvi+A+G  + P++l ++G  
   KKY23196.1 423 HERGGPVKTYLPLAEELSNFHLRLNTKVVRAVRNStwiSGIEVETSGTtheiiniTPSTGKVILAAGALSTPRTLIYSGIG 503
                  3455567788888888888888999888554444324478999998763333333346899**************999986 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   4.8e-08   4.8e-05       1      39 [.     242     278 ..     242     305 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 4.8e-08
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieaspsllfp 39 
                    D +++GaGpAgl +A+r+  a++g +v+l+e ++ + ++
     KKY23196.1 242 DYIIVGAGPAGLIVAERI--AETGASVLLVERGEASTYS 278
                    789***************..***********99988664 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.8e-07   0.00018       1      36 [.     241     276 ..     241     312 .. 0.87
   2 ?   -1.0   0.0       0.8     8e+02     100     121 ..     481     504 ..     408     517 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.8e-07
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtcl 36 
                  +d++++G+GpAGl +a+++a+ ga v+lve++++  
   KKY23196.1 241 YDYIIVGAGPAGLIVAERIAETGASVLLVERGEAST 276
                  689**************************8555443 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.8
                  ESEEEE---E..EE-BCTCTTC.T CS
                  xxxxxxxxxx..xxxxxxxxxxxx RF
  Pyr_redox_2 100 ydklvlAtGs..sprdlgipGvae 121
                   +k++lA G+  +pr+l   G ++
   KKY23196.1 481 TGKVILAAGAlsTPRTLIYSGIGP 504
                  378899999655777776666644 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.3   1.3e-07   0.00012       3      38 ..     242     277 ..     240     284 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.3e-07
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCC CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvv 38 
                    d +IVGaGpaGl+ a   +e G +v+lve+ +  ++
     KKY23196.1 242 DYIIVGAGPAGLIVAERIAETGASVLLVERGEASTY 277
                    668***************************887765 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   4.8e-07   0.00048       1      29 [.     245     273 ..     245     301 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 4.8e-07
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrd 29 
                    IvGaG +Gl  A ++a+ g++vll+e+++
     KKY23196.1 245 IVGAGPAGLIVAERIAETGASVLLVERGE 273
                    9*************************975 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   5.2   1.1e-05     0.011       1     205 [.     242     493 ..     242     531 .. 0.47

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSS....STHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESS. CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsgl....rylpeaselarlslealeelreleeelgididyrrtGllslaad. 92 
                 d +i+G+G +Gl +A   a+ g  V+l+e+g +a+   S + + l++       ++ p   +l   +l +     e++ +++     ++ G+l  + + 
  KKY23196.1 242 DYIIVGAGPAGLIVAERIAETGasVLLVERG-EAS-TYSTGGTDLVSWNDtvtqYDVP---AL-AYYLTSASDTSEYCTDTA-----DQAGCLLGGGSm 329
                 789******************9*********.988.7777777777443344432222...12.344444444466666654.....333333333211 PP

                 .............HHHHHHHH.................................HHHHHHHHTTTTEEEEEHHHHHHHSTTST..TTSEEEEETTEEEE CS
         DAO  93 .............eeeleald.................................kllallleagldaelldaeevrelepalp..gllgalfypdtgqv 143
                                     d                                 k++++++ +++ +++l+++    ++   +  + +  +f++  +++
  KKY23196.1 330 vnalmyvkppkhdF------DdkwptgwkssdvadaedrlyarnpgtlmssadgKRYDQGA-YDVLSSFLSSSGWSSIDAL-EdvESKHDVFSHPPWNI 420
                 11122222222220......12222222233333333333333333333333333333322.3332233333322222221.11222333443333444 PP

                 EHHHHHHH......HHHHHHHTT.-EEEESECEEEEEEEE..TCEEEEEEECTEEEE.......EEEEEEE--GGGHH CS
         DAO 144 dpakltaa......laraaealG.veilegtevtgleeed..gkvwgverttpgend.......aadavVnaaGawsd 205
                 + ++          ++  ae+l   +++++t+v++  +++  + + +v  +t+g+++       +  +v++aaGa s+
  KKY23196.1 421 HQHE---RggpvktYLPLAEELSnFHLRLNTKVVRAVRNStwISGIEV--ETSGTTHeiinitpSTGKVILAAGALST 493
                 3332...02223334444444432577777777774343323444444..3334332233334432448888888775 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   1.2e-05     0.012      16      50 ..     239     272 ..     227     285 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.2e-05
                 TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4  16 aesDvvivGaGssGLtaayylakkpdlkvailers 50 
                    D +ivGaG++GL  a  +a+  +  v+++er 
  KKY23196.1 239 TTYDYIIVGAGPAGLIVAERIAET-GASVLLVERG 272
                 56799******************9.999**99985 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.5   2.1e-05     0.021       1      31 [.     242     272 ..     242     291 .. 0.92
   2 ?   -2.9   0.0       3.3   3.3e+03     100     130 ..     440     470 ..     427     475 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.1e-05
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveer 31 
                   D ++vG+gpaG++ A   a+ Ga+vlLve+ 
    KKY23196.1 242 DYIIVGAGPAGLIVAERIAETGASVLLVERG 272
                   669**************************96 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.3
  FAD_oxidored 100 agvtvllntrlvevekegkriesvtveskeg 130
                   ++ ++ lnt++v+++++ + i +++ve++  
    KKY23196.1 440 SNFHLRLNTKVVRAVRNSTWISGIEVETSGT 470
                   6788999*******999767******98654 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   9.5e-05     0.094       2      29 ..     243     274 ..     242     293 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.5e-05
                 EEEE-SSHHHHHHHHHHHHTT--EEEE....E CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLi....t 29 
                  i++G+G AG+  A  +a+ Ga+vlL+    +
  KKY23196.1 243 YIIVGAGPAGLIVAERIAETGASVLLVergeA 274
                 69************************955441 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00018      0.18       2      33 ..     245     271 ..     244     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00018
  NAD_binding_9   2 ivGaGprGlavlerLlarakkkspleitlfdp 33 
                    ivGaGp+Gl v+er+++        ++ l+++
     KKY23196.1 245 IVGAGPAGLIVAERIAETG-----ASVLLVER 271
                    9**************9984.....66666666 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00032      0.32       2      47 ..     244     288 ..     243     311 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00032
                 EEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEEETT CS
        ApbA   2 ailGaGaiGsllaakLakagadvtlilrsrrlealkknGlrltseg 47 
                  i+GaG  G ++a ++a++ga v l+ r++ + + ++ G +l s +
  KKY23196.1 244 IIVGAGPAGLIVAERIAETGASVLLVERGE-ASTYSTGGTDLVSWN 288
                 69***************************9.878888888877765 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00031      0.31      17     102 ..     221     304 ..     206     310 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00031
                   HHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S--S CS
  2-Hacid_dh_C  17 evregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhlplt 102
                   ++ +g+ +s + ++ ++ +     i+G+G  G  va+r+++ g+ v+ ++r +   ++ ++ g +lvs ++ + + D+  l+  lt
    KKY23196.1 221 STSTGRTSSANITTTTSNTTYDYIIVGAGPAGLIVAERIAETGASVLLVERGEA--STYSTGGTDLVSWNDTVTQYDVPALAYYLT 304
                   555565555555555566666778***************************966..446777889999999999999877776666 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   0.00054      0.54       3      32 ..     244     273 ..     242     283 .. 0.93
   2 ?   -1.8   0.0       4.8   4.7e+03      54      78 ..     441     465 ..     435     469 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00054
                 EEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox   3 vvvGgGyiglElAgalaelgkkVtvversd 32 
                 ++vG+G  gl +A+ +ae g++V +ver++
  KKY23196.1 244 IIVGAGPAGLIVAERIAETGASVLLVERGE 273
                 79**************************86 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 4.8
                 TEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  54 gievllntkveeiegsedgvesvkl 78 
                 + +++lntkv++ + ++  ++++++
  KKY23196.1 441 NFHLRLNTKVVRAVRNSTWISGIEV 465
                 6788999999999977754666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.44
# Mc/sec: 5502.06
//
Query:       KKY23197.1  [L=323]
Description: hypothetical protein UCRPC4_g02982 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2219.55
//
Query:       KKY23198.1  [L=301]
Description: putative alpha beta hydrolase fold-3 domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-15   58.1   0.0    2.4e-15   57.0   0.0    1.5  2  Abhydrolase_3   alpha/beta hydrolase fold
    0.00039   19.4   0.1     0.0012   17.8   0.0    1.7  2  COesterase      Carboxylesterase family
    0.00048   19.7   0.0        0.1   12.1   0.0    2.3  2  Peptidase_S9    Prolyl oligopeptidase family
    0.00075   20.2   0.9     0.0011   19.6   0.9    1.3  1  Abhydrolase_6   Alpha/beta hydrolase family
     0.0093   14.7   0.0       0.41    9.3   0.0    2.0  2  AXE1            Acetyl xylan esterase (AXE1)
  ------ inclusion threshold ------
      0.042   13.1   0.0        1.3    8.3   0.0    2.3  2  Hydrolase_4     Serine aminopeptidase, S33
      0.067   12.2   0.1       0.11   11.5   0.1    1.3  1  Chlorophyllase  Chlorophyllase
      0.068   12.8   0.0       0.13   11.9   0.0    1.5  1  Esterase        Putative esterase
       0.14   11.7   0.0       0.26   10.9   0.0    1.4  1  LRR_11          Leucine-rich repeat
       0.23   10.9   0.0       0.42   10.0   0.0    1.4  1  ATP-grasp_5     ATP-grasp domain


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   1.3e-18   2.4e-15       3     125 ..      63     201 ..      61     236 .. 0.83
   2 ?   -2.4   0.0         2   3.6e+03     158     177 ..     269     291 ..     257     296 .. 0.70

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 1.3e-18
                    EE--STTTS--T...TTTHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTH..........HHHTETTCEEEEEEETHHHHHH CS
  Abhydrolase_3   3 yfHGGGfvlgsl...dthdalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqa..........welgadpsrivlaGdSaGGnla 85 
                     fHGGG v+gs+   ++h a++ + a    av+v+++Yrl Pe      + d+ + + w+a++           ++l+++p++++  G+SaGG la
     KKY23198.1  63 SFHGGGLVIGSAkflEWHAAWLFHWALSHSAVIVMPNYRLLPESNGRDILFDVSDLWTWIATSLqayieqelpdSKLEINPQKVIAHGNSAGGYLA 158
                    59*********8656788*******************************************99899******966********************* PP

                    HHHHHHHHHTT.---EEEEEEESE-SSTSST..TSHHHHHCHH CS
  Abhydrolase_3  86 aavalrardeg.epkvagqvliyPvtdlert..esesikkaee 125
                    +    ++++   +++++g+v  yP+ dle++  ++++++++e+
     KKY23198.1 159 LLSGFMIQSMPsSLNIRGIVACYPMIDLEDPwyTEADHRTSEK 201
                    ***999999854777*********8888433002222223333 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2
                    GGC..S.-SST---EEEEEETT- CS
  Abhydrolase_3 158 lla..e.dlsglpptlvvvaefD 177
                    l++  + + s++pptl++ + +D
     KKY23198.1 269 LRRlqPfSGSRFPPTLILHGLQD 291
                    5444222457799**99987766 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     7e-07    0.0012      92     144 ..      46     102 ..      45     104 .. 0.83
   2 ?   -1.5   0.0      0.47   8.4e+02     183     199 ..     142     158 ..     141     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7e-07
                 EEEESSSSSTTSSEEEEEEE--STTTS-BGCG..S-THHHHHHH...TSEEEEE---- CS
  COesterase  92 vytPkekkeakkklPVlVwihGggfqtgsase..ydgsaLaaeg...nvivVtinYRl 144
                 v++P++ +  ++  PV+  +hGgg+++gsa+   + +  L       + ++V  nYRl
  KKY23198.1  46 VFVPENVQAVDNV-PVIASFHGGGLVIGSAKFleWHAAWLFHWAlshSAVIVMPNYRL 102
                 89**998777777.****************7666777777655555599********8 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.47
                 EEEEEEEEEETHHHHHH CS
  COesterase 183 dpervtlfGesAGaasv 199
                 +p++v   G+sAG+ ++
  KKY23198.1 142 NPQKVIAHGNSAGGYLA 158
                 89***********9875 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   5.6e-05       0.1      53      79 ..     132     159 ..      78     197 .. 0.76
   2 !    5.6   0.0    0.0054       9.8     141     162 ..     276     299 ..     245     301 .] 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.6e-05
                   HHHHHTT.S--GGGEEEEEETHHHHHHH CS
  Peptidase_S9  53 ealakeg.yvdserlaitGgSyGGyltg 79 
                   ++l + +  +++++++++G S+GGyl++
    KKY23198.1 132 QELPDSKlEINPQKVIAHGNSAGGYLAL 159
                   5666667789***************987 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0054
                   -..---EEEEEEETT-SSS-THHH CS
  Peptidase_S9 141 k..aypplLlihGlaDdrvppaea 162
                      + pp+L++hGl+D+ v+ + +
    KKY23198.1 276 SgsRFPPTLILHGLQDSTVQAEDS 299
                   355779*************98765 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.9   6.3e-07    0.0011      11     159 ..      80     277 ..      60     299 .. 0.49

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 6.3e-07
                    ...GCHHHHHHHHCCT..CEEEEE--T....TSTS-GGCS--HHH.....CHHH.HHHHCCTT........TTSEEEEEETCHHHHHHHHHHCC.. CS
  Abhydrolase_6  11 assWlvapLaallaag..vhvlapDlp....GhGrsdpppldled.....ladl.aalldelaa......gggpvvlvGHSlGGalalaaapla.. 86 
                    + +W    ++ +l++   +  ++p ++    ++Gr+    +d++d     +  l a + +el        ++ +v+++G+S GG+lal+   +   
     KKY23198.1  80 HAAW---LFHWALSHSavI--VMPNYRllpeSNGRD--ILFDVSDlwtwiATSLqAYIEQEL-PdskleiNPQKVIAHGNSAGGYLALL---SGfm 164
                    2223...335555666335..778887445445522..223333321111133333333333.25999999******************...7766 PP

                    ..............EEEEES-........................----TTTS----TTHHHHHH.....TT-C...........CCCHCCHS-HS CS
  Abhydrolase_6  87 ............lvvgvlldp.......pp...............talpagllaaalelllalla.....llrl...........lawlsreplpr 132
                                +v++            p+               +++p + + a +++++  ++     +  +             ++s+  + +
     KKY23198.1 165 iqsmpsslnirgIVAC----YpmidledPWyteadhrtsekfigmPFVPGSVIEAHAAHVRSNPQppspvS--DrskledlglmiSLFHSG--RLP 252
                    6667777744443333....334444652244444444454444334444443333333333333222221..122333322333333332..444 PP

                    CCCCHHHCCCCHCHCCCGHHHHCCHHC CS
  Abhydrolase_6 133 lfladedadaawrarlarlaallaglg 159
                    +fl ++d  +++ a   +l++l+++ g
     KKY23198.1 253 EFLQGPD--PEFPAECYPLRRLQPFSG 277
                    7777777..666666666666666544 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00023      0.41      50     115 ..      23      97 ..       4     101 .. 0.66
   2 ?    3.4   0.0     0.014        25     169     195 ..     139     165 ..     125     188 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00023
                 S-SSEEEEEEEEEEGGGEEEEEEEEEES.SS..SSEEEEEEEE-TT--.....GGGHHH..HHHHHHTT-EEEEE CS
        AXE1  50 elkavkvydltfegvrgarikaklvlPkeke..eklPavvefhGYegs.....rgeihd..llnyaaaGyavvvm 115
                  l++       +++v+g++i a + +P++ +  +++P++  fhG           e+h   l ++a++  av+vm
  KKY23198.1  23 VLSKFTQLTTSYKTVGGHEIAALVFVPENVQavDNVPVIASFHGGGLVigsakFLEWHAawLFHWALSHSAVIVM 97 
                 555555666789***************97652379********96533111112234431145777777777777 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.014
                 TTEEEEEEEEEEETHHHHHHHHHHHH- CS
        AXE1 169 pevDeeRvavlGasqGGalalavaale 195
                  e+++++v + G+s GG lal  + + 
  KKY23198.1 139 LEINPQKVIAHGNSAGGYLALLSGFMI 165
                 578999**************9877554 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0007       1.3      76     119 ..     144     192 ..     126     238 .. 0.73
   2 ?    2.5   0.0      0.04        73     193     211 ..     282     300 ..     270     301 .] 0.88

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0007
  Hydrolase_4  76 lplfllGhSmGGliallyl...lrypd..kvaglilsaPalkikaklka 119
                  ++++  G S GG++all +   +  p+  +++g++ + P+++++ ++ +
   KKY23198.1 144 QKVIAHGNSAGGYLALLSGfmiQSMPSslNIRGIVACYPMIDLEDPWYT 192
                  579999***********987776666667888*********99976533 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.04
  Hydrolase_4 193 PllllhGeaDkvvdpeasr 211
                  P+l+lhG +D  v+ e+sr
   KKY23198.1 282 PTLILHGLQDSTVQAEDSR 300
                  9************999987 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   6.2e-05      0.11      64     135 ..      83     159 ..      45     185 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.2e-05
  Chlorophyllase  64 kllnhiashGfivvaPqlykllp.PsaqdeidsaaevieWlseglkavlp.....tsveanlsklalvGhsrGGktaf 135
                      l+++  sh  ++v P+ y+llp  ++ d + + +++  W+++ l+a+++     ++ e n +k+   G s GG  a+
      KKY23198.1  83 WLFHWALSHSAVIVMPN-YRLLPeSNGRDILFDVSDLWTWIATSLQAYIEqelpdSKLEINPQKVIAHGNSAGGYLAL 159
                     4778888*********8.8999956677888899********999987765554667899999**********98765 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.4e-05      0.13       6     132 ..      40     161 ..      35     168 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.4e-05
                 EEEEEEEEE.CC.GGTTTEEEEEEE--TTHHCCHHHHHCHHCCCCHCC.T.EEEEEECCCSS-TTTTTSBTTSBB.TTEEETTCCCCCCHCHHHHTHHH CS
    Esterase   6 reikvqvyLPedyspgrkypvvylldGltgwdqnfrakelleslareg.eiaeviivvvprggessfysdwdlgarfyenategpgaeayetfltqeLl 103
                 +ei   v+ Pe+ ++  + pv+  ++G  g  +    +  ++++   +  +   +++v+p+    +  + +d    f++       a+ ++ +++qeL+
  KKY23198.1  40 HEIAALVFVPENVQAVDNVPVIASFHG-GGLVIGSAKFLEWHAAWLFHwALSHSAVIVMPNYRLLPESNGRDIL--FDVSDLWTWIATSLQAYIEQELP 135
                 667777778888888888888888888.4444444433333333222213445788888888877777777755..7777777778899999******9 PP

                 HHHHHHCSEECCCEEEEEETHHHHHHHHH CS
    Esterase 104 plldanfrtapdgravaGqSmGGlgALil 132
                    d++++++p++  + G S GG+ AL+ 
  KKY23198.1 136 ---DSKLEINPQKVIAHGNSAGGYLALLS 161
                 ...59*******99999**********86 PP

>> LRR_11  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00015      0.26      18      28 ..     285     295 ..     283     296 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
                 HHHHTTT-EEE CS
      LRR_11  18 IlkGLqNSTiq 28 
                 Il GLq ST+q
  KKY23198.1 285 ILHGLQDSTVQ 295
                 9*********9 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00023      0.42     175     218 ..      13      57 ..       3      61 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00023
  ATP-grasp_5 175 k.adlaaleellvrlsqLvvdlpeIreldinPllveeegvvalDa 218
                  +  d++ + e+l+++ qL ++++ +   +i  l++ +e+v a+D 
   KKY23198.1  13 PeYDTQPIREVLSKFTQLTTSYKTVGGHEIAALVFVPENVQAVDN 57 
                  3489999************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1910.75
//
Query:       KKY23199.1  [L=486]
Description: putative carboxypeptidase 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-43  148.8   0.1    3.7e-43  148.5   0.1    1.1  1  Peptidase_S10  Serine carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.5   0.1   2.1e-47   3.7e-43      88     418 ..       1     368 [.       1     369 [. 0.81

  Alignments for each domain:
  == domain 1  score: 148.5 bits;  conditional E-value: 2.1e-47
                    EEEE--STTSTT-EETTSSG...S--SHHHHHHHHHHHHHHHHHH.STCG........TTSEEEEEEETTHHHHHHHHHHHHHTHCCH--S..... CS
  Peptidase_S10  88 vlfldqPvGvGFSysntksd...vktddeevaedlyefLkkffek.fpey........ksrdfyitGESYaGhyvPalakeilkknkkekk..... 166
                    +lf+dqPv vG+Sy++ ++     ++ +e   e+    L +f++   pe           +++ +++ESY+G+y Pa+++ + ++n+   +     
     KKY23199.1   1 MLFIDQPVQVGYSYDTLHNGtkdLASANEMDEEEKTIELDDFIDGhIPEQnntflykpHDEKIGLWTESYGGKYGPAFMSFFSHQNEGIRNgtisg 96 
                    79************97766644434444444455555688888873455544456655556788***********************9999999** PP

                    ...STSEEEEEEEESE-SBHHHHHCCHHH....HHHHTTSSHHHHHHHHHHHHEETHHHHHHHHHHHHHHHHHHHHH...HHHHCH....CEETTE CS
  Peptidase_S10 167 ...kkinLkGlligNglideaeqvnsyve....fayehgliseeeyeslkkacekkeeleqesekcanllekaskva...vekenk....glnvyn 248
                       + + L  l i Ng+id+a+ +  y++    ++y+ ++++e+ +++   ++e  + + +++ekc++l +  + ++   ++   +    + n+  
     KKY23199.1  97 pgtHYLHLDTLGIVNGCIDQAHCTAGYASmlvnNTYGIKAVNETFHHKQMYEMERPDGIFDQIEKCQDLSHMDDPDEygdID---EvnefCKNISA 189
                    **999*****************999999877778888999998877776666666799999*****9877666554333311...11123555555 PP

                    TTSEETTSSEE........HHHCTTCCCCTTTTTCHHHHHHHHTSHHHHHHTT--TTSSS--SB-HHH.HHHCTCCC-SBCHHHHHHHHHTT-EEE CS
  Peptidase_S10 249 ileeccklkae........lkksstdaqggedpydesyvekylnkkeVrkalhvnasvkkweecndsv.feqleddisksveeileellesglrvl 335
                    + ee                  + + + + +dp+ + y   +ln++ V+kal+v+  +++w + + s  f+ ++d  + +++e++  ll++g++v 
     KKY23199.1 190 VIEEL-----FiapymadgNYGWFDITHPAQDPFPHMYEVGFLNQHWVQKALGVP-VNHSWVAESVSAaFSLTGDINRGDTIEDIAYLLDNGVKVA 279
                    55555.....0444557777778889999*************************7.669*****99888999999999****************** PP

                    EEEETT-STT-HHHHHHHHHHTECTTECCSCCCEEEE......TTTCESEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHHHHHHT CS
  Peptidase_S10 336 iynGdvDlicnvlgteawikklelsgkkefrpwevsp......kkengqvaGyvkeyenltfltvkgaGHmvPedkpeealqllerfis 418
                    + +Gd D++cn++  e+++ ++ ++    f+++ ++p      ++     +G  ++++n++f++v++aGHmvP ++pe+++q+++r + 
     KKY23199.1 280 LVYGDRDYACNWINGETTSISIPYTYLPSFTAAGYEPltvsspETPPFISYGLARQHGNFSFTRVFQAGHMVPSYQPEASYQIFKRALF 368
                    ***********************************997665433333345777888899**************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 3058.00
//
Query:       KKY23200.1  [L=463]
Description: putative c6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00015   20.9   0.0    0.00025   20.2   0.0    1.3  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.4e-08   0.00025      61     174 ..     139     244 ..     118     264 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.4e-08
  Fungal_trans  61 sltsesqefiafplraeilihedfsspssslwilqsLlllelyektss...d.ralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrr 153
                   ++ +  q+      + +++i  +f  +++sl+ +q  ll+  y++ s    d  +  +r ++ +       gLh+  ++ +      l+++  + r+
    KKY23200.1 139 QRLRL-QMIH----AGDACI--SFCESFDSLNDVQIVLLFVNYLLRSLfdgDqSYRTWRRLNDVTGALFAFGLHEPIEDANG-----LPFFLVQLRK 223
                   33332.2433....888888..55556666*****99999888888887553366666688888889999****99999997.....********** PP

  Fungal_trans 154 RlwwaaFylDktialklGrpp 174
                   Rl+  +++ D+ +a+ lGrpp
    KKY23200.1 224 RLFARVYSADISLATFLGRPP 244
                   ********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.52
# Mc/sec: 2682.00
//
Query:       KKY23217.1  [L=273]
Description: putative proteasome regulatory particle subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-16   58.5   0.0    1.3e-15   57.7   0.0    1.3  1  CSN8_PSD8_EIF3K  CSN8/PSMD8/EIF3K family
    0.00041   19.8   0.0    0.00052   19.5   0.0    1.1  1  SAC3_GANP        SAC3/GANP family


Domain annotation for each model (and alignments):
>> CSN8_PSD8_EIF3K  CSN8/PSMD8/EIF3K family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   1.4e-19   1.3e-15       4     134 ..     102     238 ..     100     245 .. 0.89

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 1.4e-19
  CSN8_PSD8_EIF3K   4 aelytniLlkaLtqndladfrlllkrlpaaiqqs.....deeiqklltLetlLeeanyakfwstlksd.dlsadltadvagleelvReeiaklv 91 
                      +++++++Ll++L+q d a f++ l+ l +    +     d+ i++ + Le+ L+e++y k+w + k +  +s+++  + + l  ++R eia++ 
       KKY23217.1 102 SKITGLYLLLLLSQGDYAGFHTILEGLVEVAGADgkveeDPFIRYPIDLERSLMEGSYDKVWRSTKGEgVPSEEFGLFSEVLIHTIRAEIASCA 195
                      6799*********************88776666578888************************999873578899999999************* PP

  CSN8_PSD8_EIF3K  92 gkaYesIsadvlaelLglssdeelekfvkevgWeldaatvivp 134
                      + +Y s+ ++++++lL l+s+ ++ +f+ ++gW l + +  +p
       KKY23217.1 196 QTSYPSLPISNAKNLLFLDSEGAVIEFAQQRGWLLKDGRIYFP 238
                      *******************999***********9965555454 PP

>> SAC3_GANP  SAC3/GANP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   5.8e-08   0.00052     140     289 ..      73     228 ..      57     232 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 5.8e-08
                 HHHHHHHHHHHHHHHHHHHHHH...---TTHHHHHHHHHHHTTT-......HHHHHH...HCTS-HHHHTSHHHHHHHHHHHHH--TTHHHHHHHHT.. CS
   SAC3_GANP 140 qqnleqLqkclqsLlelYddlrkkkeelpneaefrayylLlnlrd......pdilre...vqelpseilkspevqlalklvaalqennyvrffklvk.. 227
                  q+ e +++ +++L  +Yd  +  +++++++++++++ylLl l++      ++il+    v     ++ ++p +++ ++l + l+e+ y ++++ +k  
  KKY23217.1  73 SQDPESFTRYYSQLQPFYDFPT--SSPSTQRSKITGLYLLLLLSQgdyagfHTILEGlveVAGADGKVEEDPFIRYPIDLERSLMEGSYDKVWRSTKge 169
                 6788999999********9988..789***************966556666555555111556699*******************************98 PP

                 TS-H.HHHHHHGGGHHHHHHHHHHHHHHHS-TT---EEHHHHHHHTT-SSHHHHHHHHHHTT- CS
   SAC3_GANP 228 evsy.lqacllerhfnevRrkalkalsraykskskkvpleeLaelLlfddeeeaeefceaygl 289
                  v+      + e+ + ++R ++ ++ +++y     ++p+++ ++lL++d+e  ++ef ++ g 
  KKY23217.1 170 GVPSeEFGLFSEVLIHTIRAEIASCAQTSY----PSLPISNAKNLLFLDSEGAVIEFAQQRGW 228
                 555404567789999***************....79*********************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1996.37
//
Query:       KKY23218.1  [L=540]
Description: putative histone acetyltransferase spt10 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-14   53.1   1.6    5.3e-14   52.2   1.6    1.5  1  zf-H2C2         H2C2 zinc finger
    5.1e-10   39.3   0.2    5.1e-10   39.3   0.2    2.4  2  Integrase_H2C2  Integrase zinc binding domain
     0.0012   19.1   0.0     0.0031   17.7   0.0    1.6  1  Acetyltransf_1  Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
      0.039   14.6   0.0      0.096   13.4   0.0    1.7  1  Acetyltransf_3  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> zf-H2C2  H2C2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   1.6   1.2e-17   5.3e-14       1      39 []     310     348 ..     310     348 .. 0.99

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 1.2e-17
     zf-H2C2   1 HkltHlGinkltallarkYhwlgiketvseVissCkaCq 39 
                 H++ H Gink+ta +a k+hw++iketvs Vi++C +C+
  KKY23218.1 310 HQQSHGGINKTTAQIAVKFHWVRIKETVSLVIKNCAECK 348
                 **************************************7 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.2   1.1e-13   5.1e-10       3      55 ..     299     350 ..     297     353 .. 0.93
   2 ?   -3.0   3.8       1.9   8.4e+03      12      25 ..     461     473 ..     454     492 .. 0.83

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 1.1e-13
  Integrase_H2C2   3 kslrkeilkeaHdsagHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrr 55 
                     ++ + ei +++H++ +H Gi+kt+++++ +++W +++++v  ++k+C +C+++
      KKY23218.1 299 PQQQYEIAQNIHQQ-SHGGINKTTAQIAVKFHWVRIKETVSLVIKNCAECKES 350
                     677899*******9.***********************************975 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.9
  Integrase_H2C2  12 eaHdsagHlGiekt 25 
                     ++Hd +gH+ ++ t
      KKY23218.1 461 HHHD-MGHPEYDPT 473
                     3444.7**998877 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   6.9e-07    0.0031      60     117 .]     145     203 ..     124     203 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 6.9e-07
                     EEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTE.SEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  60 vayieslaVspeyrgkGlGsaLlealeerareegi.kkivlaveedndaairlYeklGF 117
                     ++   ++ V    r+kG+G+++ e ++e+a + g+ + ++  v e+n+a+ r +  lGF
      KKY23218.1 145 HICNGGFLVTDLSRNKGVGKLMGECYLEWAPQLGYsYSVFNLVYETNTASTRIWDSLGF 203
                     4444489999999**********************7777557************77999 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.1e-05     0.096      80     138 .]     142     204 ..     112     204 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.1e-05
  Acetyltransf_3  80 e....aelgymlapsfwgkGyateavralleyafeelgler.lvavidkeNeaSirvleklGfe 138
                     +    ++ g+++ + +++kG+++ + ++ le+a  +lg+++ ++  + ++N+aS r+  +lGf+
      KKY23218.1 142 RsshiCNGGFLVTDLSRNKGVGKLMGECYLEWA-PQLGYSYsVFNLVYETNTASTRIWDSLGFK 204
                     33455777788888899****************.888899779999*****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.51
# Mc/sec: 3199.50
//
Query:       KKY23219.1  [L=305]
Description: putative rli and duf367 domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-53  177.8   0.0    9.1e-53  177.3   0.0    1.2  1  Ribo_biogen_C  Ribosome biogenesis protein, C-terminal


Domain annotation for each model (and alignments):
>> Ribo_biogen_C  Ribosome biogenesis protein, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.3   0.0   5.1e-57   9.1e-53       1     127 []      13     139 ..      13     139 .. 0.99

  Alignments for each domain:
  == domain 1  score: 177.3 bits;  conditional E-value: 5.1e-57
                    EEE-TT-SSB--GGGHHHHHHT-EEEE---TTT--GGGTTT-E....EB--S-B--STTTTT-BS---HHHHHHHHHHHTT-HHHHHHHHTSSTTH CS
  Ribo_biogen_C   1 ivlspkakkvlspaDreiveksgiavvdcsWarleevkfkklkakeerlLPyLvAaNpvnYgkplkLscvEAlaaalyilglkeeaeellskfkwg 96 
                    +v+sp+ak v+spaDrei+e++g avv+csW r++e+++ ++ +k+erlLPyLvAaNpvnYg+p++L+cvEAlaa++yi+g+ e+aee+l++f++g
     KKY23219.1  13 VVISPNAKAVVSPADREILEQHGAAVVECSWVRVKEIPWARIGGKCERLLPYLVAANPVNYGRPWRLNCVEALAACFYICGHPEWAEEVLKHFRYG 108
                    79********************************************************************************************** PP

                    HHHHHHCHHHHHHH.TT--HHHHHHHHHHHH CS
  Ribo_biogen_C  97 eeFlelnkelleeYakckdseevvevqkeyl 127
                    + Fle+n++ll++Ya+c+++e+v+++++++l
     KKY23219.1 109 QPFLEMNAQLLKRYAACSTEEDVKATEQHWL 139
                    ***************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2051.76
//
Query:       KKY23220.1  [L=539]
Description: putative vhs domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-37  126.2   0.6    7.8e-35  119.8   0.1    2.8  2  VHS              VHS domain
    4.2e-22   78.2   3.7    5.1e-22   78.0   0.1    2.8  4  GAT              GAT domain
    6.7e-22   77.9   0.4    1.1e-21   77.1   0.4    1.4  1  Alpha_adaptinC2  Adaptin C-terminal domain
    1.8e-09   37.1   0.0    3.8e-06   26.4   0.0    3.1  2  GGA_N-GAT        GGA N-GAT domain
  ------ inclusion threshold ------
      0.022   15.3   1.1       0.13   12.8   0.1    2.7  3  DUF5344          Family of unknown function (DUF5344)


Domain annotation for each model (and alignments):
>> VHS  VHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.8   0.1   2.2e-38   7.8e-35       3     141 .]      21     148 ..      19     148 .. 0.97
   2 ?   -1.8   0.1      0.68   2.5e+03       9      37 ..     268     297 ..     261     303 .. 0.75

  Alignments for each domain:
  == domain 1  score: 119.8 bits;  conditional E-value: 2.2e-38
                 HHHHHHHHHHHHT-TT-SS--HHHHHHHHHHHHCS.TCHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHCTTT CS
         VHS   3 sasslekliekATdeslreedlslileicDlinek.eagpkeavrlikkkinsknphvallaLklldalvkNcGskfhleiaskeflnelvklilekkn 100
                  +s+l+++i +A+d+++ e++l+l+le++Dlin+k +++p+ea+ +i   in++np+v+llaL lld++vkNcG++fhl+i++keflnel+k       
  KKY23220.1  21 AQSTLQRYIYNACDPQNFEPNLALNLEVADLINSKkGNTPREAAVTIVNLINHRNPNVSLLALGLLDICVKNCGYPFHLQISTKEFLNELLK------- 112
                 57889******************************9*******************************************************9....... PP

                 CHCS.HHHHHHHHHHHHHHHT....TT-TTGHHHHHHHHHHHHTT CS
         VHS 101 sklakvkkkvlelleeWadaf....knkpelkkisdvykllkrkg 141
                          +le++eeW++++    ++k++l  i+d+++ll +kg
  KKY23220.1 113 ---------ILEAIEEWRQTIcqtsRYKEDLGFIRDMHRLLLYKG 148
                 .........899************9***************99887 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.68
                 HHHHHHT-TT-SS-.-HHHHHHHHHHHHCS CS
         VHS   9 kliekATdeslree.dlslileicDlinek 37 
                  +i+k ++e  ++    +  lei D i  +
  KKY23220.1 268 PKIQKMCEEESDDAeAVAKLLEINDSIHRT 297
                 579999988777653788899999999877 PP

>> GAT  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       0.5   1.8e+03      35      64 ..      20      52 ..      14      54 .. 0.67
   2 ?   -2.8   0.0       2.3   8.1e+03      24      34 ..     105     115 ..     100     132 .. 0.56
   3 ?   -2.3   0.1       1.6   5.9e+03      35      46 ..     180     192 ..     163     207 .. 0.59
   4 !   78.0   0.1   1.4e-25   5.1e-22       1      77 []     231     307 ..     231     307 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.5
         GAT 35 amqpriqklieetadeed...llaelLqlNDeL 64
                 +q ++q++i +  d ++    la  L++ D +
  KKY23220.1 20 PAQSTLQRYIYNACDPQNfepNLALNLEVADLI 52
                6899******99866664334555555555555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.3
         GAT  24 ellkeLyetck 34 
                 e l+eL + ++
  KKY23220.1 105 EFLNELLKILE 115
                 33333333333 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.6
         GAT  35 amq.priqkliee 46 
                 a+q  ++q+li +
  KKY23220.1 180 AAQsAKLQELIRR 192
                 3331356666655 PP

  == domain 4  score: 78.0 bits;  conditional E-value: 1.4e-25
         GAT   1 rnnaklLsemLsstepdeellenellkeLyetckamqpriqklieetadeedllaelLqlNDeLnnvlerYerlkkg 77 
                 +++ak+L+emL+s++p++++ ++++++eL++++++++p+iqk++ee +d+ +++a+lL++ND++++++erY+ +kkg
  KKY23220.1 231 QQKAKILEEMLQSHQPGDKVGDGDVFEELANALQSAHPKIQKMCEEESDDAEAVAKLLEINDSIHRTVERYKLVKKG 307
                 689************999********************************99**********************997 PP

>> Alpha_adaptinC2  Adaptin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.4   3.2e-25   1.1e-21       4     108 ..     426     534 ..     423     537 .. 0.92

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 3.2e-25
                      EEEEETTEEEEEEEEETTSTTEEEEEEEEEE-SSS-EEEEEEEEEEBTTCEEEEEEES-S-B-TTCEEEEEEEEEEES...CTTS-EEEEEEEE CS
  Alpha_adaptinC2   4 vlyekddlqIgfkfekperpgqiritlsftNkssqpisnfsfqaavpkslklqlqppsstvlppnpggqitqvllien...pskkplrmrlris 94 
                       l ++++++I+f ++++  ++ i+i ++f++  sqpi+ ++fq+av k+++lql+p+++++++pn+++ i+q++ +++    ++ ++++r+++s
       KKY23220.1 426 LLVHSSAVKITFMCKRQPGQQGIHILATFSSLVSQPITGLHFQVAVEKGYTLQLKPQTGRDVAPNQQDGIQQQIFVSGveeGKGTSIKLRFKVS 519
                      57899***********666666********************************************************99988999******** PP

                      EECTC.EEEEEEEEE CS
  Alpha_adaptinC2  95 ykvgq.aikeqidvl 108
                      y+vg+ + +eq++v 
       KKY23220.1 520 YNVGGvPKEEQGNVP 534
                      **6666*****9996 PP

>> GGA_N-GAT  GGA N-GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.1e-09   3.8e-06       3      33 ..     179     209 ..     178     214 .. 0.91
   2 !    7.2   0.0    0.0011       3.9       5      21 ..     232     248 ..     229     250 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.1e-09
   GGA_N-GAT   3 deeksklLarLLkSknpeDLqaANrLIKsmV 33 
                 ++ +s +L++L++ + peDLq+AN L K m 
  KKY23220.1 179 RAAQSAKLQELIRRGGPEDLQEANHLMKVMA 209
                 66799***********************996 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0011
   GGA_N-GAT   5 eksklLarLLkSknpeD 21 
                 +k+k L++ L+S +p D
  KKY23220.1 232 QKAKILEEMLQSHQPGD 248
                 79*************98 PP

>> DUF5344  Family of unknown function (DUF5344)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.77   2.8e+03       7      45 ..     102     140 ..      98     143 .. 0.68
   2 ?   -2.0   0.1       1.6   5.6e+03      42      58 ..     227     243 ..     210     245 .. 0.68
   3 ?   12.8   0.1   3.7e-05      0.13      14      70 ..     255     312 ..     253     315 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.77
     DUF5344   7 nqaeVeqkLselktaaeelktsipetisgknsldvveki 45 
                  ++e  ++L ++ +a+ee + +i +t+  k++l +++ +
  KKY23220.1 102 STKEFLNELLKILEAIEEWRQTICQTSRYKEDLGFIRDM 140
                 556667777777777777777777777777777776665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.6
     DUF5344  42 vekineleeeleellka 58 
                 v k+++ ++ lee+l++
  KKY23220.1 227 VAKVQQKAKILEEMLQS 243
                 45666667777777776 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 3.7e-05
     DUF5344  14 kLselktaaeelktsipetisgkn.sldvvekineleeeleellkaYktlllknvedt 70 
                 +++el +a+++ +++i++  ++++ + ++v k+ e++++++  +++Yk + + +ve++
  KKY23220.1 255 VFEELANALQSAHPKIQKMCEEESdDAEAVAKLLEINDSIHRTVERYKLVKKGDVEAA 312
                 6899***********9998877652799*******************98776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1119  (0.0624129); expected 358.6 (0.02)
Passed bias filter:                      738  (0.0411624); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.52
# Mc/sec: 3123.79
//
Query:       KKY23221.1  [L=242]
Description: putative ras small monomeric gtpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-38  131.4   0.0    9.3e-24   83.9   0.0    2.3  2  Ras       Ras family
    6.5e-11   42.5   0.0    1.8e-10   41.1   0.0    1.7  2  Roc       Ras of Complex, Roc, domain of DAPkinase
     0.0034   17.4   0.0     0.0062   16.6   0.0    1.4  1  MMR_HSR1  50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.026   14.3   0.2       0.89    9.3   0.0    2.2  2  PRK       Phosphoribulokinase / Uridine kinase family
      0.052   13.1   0.7        0.9    9.1   0.1    2.3  2  AAA_25    AAA domain
       0.13   11.8   0.0        2.1    7.8   0.0    2.6  2  GTP_EFTU  Elongation factor Tu GTP binding domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   3.1e-27   9.3e-24       3     102 ..       8     106 ..       6     120 .. 0.94
   2 !   45.3   0.0   2.3e-15   6.8e-12     107     161 ..     141     195 ..     130     196 .. 0.93

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 3.1e-27
                 EEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHS CS
         Ras   3 vlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrva 101
                  + Gd+++GK+s++lr v++++++ey++Ti +d+y+ + +vdg  + l++ DTAGqee++ l  ++  +++++llvydit+++s ++++ ++e i   +
  KKY23221.1   8 TICGDGGCGKSSITLRLVRSQWTSEYDPTI-EDSYSVTRTVDGLPYFLSLTDTAGQEEYRGLWAASNLKSDAFLLVYDITNAASIDTLEYFMEMIDIET 105
                 689***************************.**********************************************************9999887666 PP

                 T CS
         Ras 102 e 102
                 +
  KKY23221.1 106 D 106
                 5 PP

  == domain 2  score: 45.3 bits;  conditional E-value: 2.3e-15
                 EEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 107 ivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                  ++ GnK+Dl++ ra++ ++g e+a++ g+ f+etSA++  n+ee+f  ++r++ 
  KKY23221.1 141 KIVAGNKCDLKDARAITSRQGLEWARKRGCGFMETSAREMVNIEETFALIVRRVV 195
                 5789***********************************************9875 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0     6e-14   1.8e-10       2     103 ..       7     102 ..       6     110 .. 0.84
   2 ?   -2.7   0.0       2.1   6.4e+03     111     120 .]     141     150 ..     136     150 .. 0.76

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 6e-14
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHH...HCHHH CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrss...enlke 97 
                 v ++Gd+g GK+s+  r+v+++ ++++++ti  +++ +++  ++g+        + l++ DtaGqe++r l      ++++++lvyd ++    ++l++
  KKY23221.1   7 VTICGDGGCGKSSITLRLVRSQWTSEYDPTIEDSYSVTRT--VDGL-------PYFLSLTDTAGQEEYRGLWAASNLKSDAFLLVYDITNAasiDTLEY 96 
                 679******************************9987764..6664.......4679******************************554411267788 PP

                 HHHHHH CS
         Roc  98 Wlkelk 103
                  ++ ++
  KKY23221.1  97 FMEMID 102
                 887775 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.1
                 EEEEEE-TTT CS
         Roc 111 vilvgnkiDl 120
                  i+ gnk+Dl
  KKY23221.1 141 KIVAGNKCDL 150
                 47899***95 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.1e-06    0.0062       2      98 ..       7      99 ..       6     122 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.1e-06
                EEEEESTTSSHHHHHHHHHTS......TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT..TTCSHHHH CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge......kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdas..eeklkpld 94
                v i G    GKS++  +l+++         ++d   +Tr++    +      + l+Dt+G  e   e +gl  a  ++ ++d++llv d++    +++ l+
  KKY23221.1  7 VTICGDGGCGKSSITLRLVRSqwtseyDPTIEDSYSVTRTVDGLPY-----FLSLTDTAG-QE---EYRGLWAA--SNLKSDAFLLVYDITnaA-SIDTLE 95
                789999*************963322223344555555555554433.....489******.44...23344333..35679********99431.344433 PP

                HHHH CS
    MMR_HSR1 95 eele 98
                  +e
  KKY23221.1 96 YFME 99
                3333 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0003      0.89       2      22 ..       7      27 ..       6      61 .. 0.82
   2 ?    3.0   0.0     0.025        74      30      74 ..      88     133 ..      77     136 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0003
         PRK  2 IgvagsSGaGkttvarkleki 22
                + ++g+ G+Gk++++ +l+ +
  KKY23221.1  7 VTICGDGGCGKSSITLRLVRS 27
                579************999865 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.025
         PRK  30 aaei.egdsflrldraekdleleerkrakekevsflspeandfdll 74 
                 aa+i ++  f+++  +e d ++e+++r+  +  s+ + +a+d+  l
  KKY23221.1  88 AASIdTLEYFMEMIDIETDQRMEDNQRRIRAAKSAAGGKAIDYSTL 133
                 55554778899999***************************99865 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1    0.0003       0.9      34      56 ..       5      27 ..       1     123 [. 0.87
   2 ?    2.7   0.1     0.027        80      69     121 ..     173     228 ..     153     240 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0003
      AAA_25 34 elallaGapgtGKttlaldlala 56
                  + ++G++g+GK+ ++l l+ +
  KKY23221.1  5 VSVTICGDGGCGKSSITLRLVRS 27
                567899************99876 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.027
      AAA_25  69 peqgkVlyvsaEdsedelrrRlravgeal....rddarllvldlagv.eslpLfakdr 121
                 +e  +  +v+ E++ + + rR+ +++++l    +d++ ++  +++++  ++    +d+
  KKY23221.1 173 METSAREMVNIEETFALIVRRVVEARKQLaqggADPQAVAGQQRVQWkRNMA--ITDT 228
                 366677799******************9988887777777777666633333..3332 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0   0.00071       2.1      66     116 ..      48      98 ..       3     109 .. 0.74
   2 ?   -1.3   0.0      0.46   1.4e+03     126     139 ..     142     155 ..     132     194 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00071
                 TCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTBSTHHHHHHHH CS
    GTP_EFTU  66 etkkylinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqteevlr 116
                 ++  y ++l Dt G +++     ++  + D  +lv d+++     t e + 
  KKY23221.1  48 DGLPYFLSLTDTAGQEEYRGLWAASNLKSDAFLLVYDITNAASIDTLEYFM 98 
                 455677788888888888888888888888888888888877777766655 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.46
                 EEEEESCGSTHHHH CS
    GTP_EFTU 126 ivfiNKmDrlkael 139
                 iv+ NK+D  +a+ 
  KKY23221.1 142 IVAGNKCDLKDARA 155
                 77888998876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 1568.20
//
Query:       KKY23222.1  [L=587]
Description: putative glycosyl hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-25   87.5   0.0    1.2e-24   86.6   0.0    1.4  1  Glyco_hydro_5_C  Glycoside hydrolase family 5 C-terminal doma


Domain annotation for each model (and alignments):
>> Glyco_hydro_5_C  Glycoside hydrolase family 5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.0   6.9e-29   1.2e-24       1      87 []     463     552 ..     463     552 .. 0.94

  Alignments for each domain:
  == domain 1  score: 86.6 bits;  conditional E-value: 6.9e-29
  Glyco_hydro_5_C   1 RPyPakvaGtplsfsfdlktgeftlewtadkssaedseTeIflPelhyp.kgrkvevsggkwey....deerqtlyvvwahsepgeqhtvtV 87 
                      RP+P k++G +++++fdlk+++ftl+++a+k + ed++TeI+lPe+h+p + +kvevsggkw++    + ++ +++++w+h e geq ++++
       KKY23222.1 463 RPSPLKTNGSVQKYGFDLKSCTFTLSLEAEKPTVEDQPTEIYLPEFHFPiTRIKVEVSGGKWTIstdeECGAAVQRLRWWHGE-GEQ-NIKI 552
                      9************************************************9999**********99964448899*********.999.8887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 3688.18
//
Query:       KKY23223.1  [L=120]
Description: putative nadh:ubiquinone oxidoreductase 14kd subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-22   80.0   0.3    4.1e-22   78.6   0.3    1.6  1  GRIM-19   GRIM-19 protein


Domain annotation for each model (and alignments):
>> GRIM-19  GRIM-19 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.3   2.3e-26   4.1e-22       3      94 ..       2      93 ..       1     115 [. 0.92

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 2.3e-26
                XXXXXXSTTXSXXXXSXXXXXXXSXSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS CS
     GRIM-19  3 kQdmpPkGGYapinykrklpktllsglsllalviavtavglyavlksnkerrrekiekrsarlailPlllAerdrrylkqlrknrdeeaklm 94
                 QdmpP+GGY+ ++ykr++p +++++   l+++ +v+a+g+ +v+ + +er++   ek  +r+ ++Pll+Ae+dr  ++++ + ++ e+ l+
  KKY23223.1  2 VQDMPPTGGYNTVQYKRNIPTRGFRPSIYLLGMGVVMAYGWRQVFVGIRERNELAREKMWSRIHLTPLLQAEEDRDQVRRYYADKEREKALL 93
                6***************************************************************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.31s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 787.14
//
Query:       KKY23224.1  [L=507]
Description: putative trna m g methyltransferase domain containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-16   60.8   0.0    5.4e-05   23.0   0.0    3.3  3  tRNA_m1G_MT  tRNA (Guanine-1)-methyltransferase
  ------ inclusion threshold ------
        1.5    7.7   7.7        2.4    7.0   7.7    1.4  1  NARP1        NMDA receptor-regulated protein 1


Domain annotation for each model (and alignments):
>> tRNA_m1G_MT  tRNA (Guanine-1)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.4e-06     0.022       2      73 ..     161     228 ..     160     264 .. 0.84
   2 !   23.0   0.0     6e-09   5.4e-05      83     133 ..     306     350 ..     295     362 .. 0.87
   3 !   19.4   0.0   7.6e-08   0.00068     133     195 .]     377     428 ..     364     428 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.4e-06
                  GGSHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEETSSHHHHHHHHHHHCCGHHCGG-TTEEEESSCGGHHHH CS
  tRNA_m1G_MT   2 kkasekelvslevqllrdytanrrntvddelygggagmvlkaepelealesvntekwkvilltptGkkftqe 73 
                  ++++  el sl  ql+r+y++n r++  ++l     g  lk + +++ + +  +ekwk + +t +  +f ++
   KKY23224.1 161 DLMNSYELISLGAQLTRCYSDNYRSPFKAQLVISSWGGSLKKRFDTVLSRQ--YEKWKGVKFTSK--SFLEA 228
                  579999*******************************************97..78*****99998..66654 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 6e-09
                  GEEEEETTTSSBECCGGTTSSEEEEEESSSSTTCSTTHHHHHHHHHHHHTT CS
  tRNA_m1G_MT  83 klvylcgdyegvdervdddkvdeysIGdfVlkggekgalvlidavkrllaG 133
                  +++yl+ d++ +++ + +    +y+IG++V+k++ kg+    +   ++ aG
   KKY23224.1 306 EIIYLTSDSPYTLKHLTPYS--TYIIGGLVDKNRHKGI----CYRIARDAG 350
                  89******************..***************9....666665555 PP

  == domain 3  score: 19.4 bits;  conditional E-value: 7.6e-08
                  TTC.EEB-S-CCC...CHCTS..CTTSEHHTEHHHHHHHHHCCCTTTHHHHHHHHHHHSCSXS CS
  tRNA_m1G_MT 133 GvlntaslpedsfsnrllekpnytrpltlrglkVpeiLlsgnhakienWrlkealertvprRk 195
                   +l ta+lp+ ++   + +++  + +lt++  +V ei+  + +   ++W   ea+ r++p+Rk
   KKY23224.1 377 PILRTAKLPIGEY---MSMQS--RTVLTTN--HVCEIMIRWLE--CGDW--GEAFTRVLPKRK 428
                  4778*********...99999..99*****..***********..****..***********7 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.7   0.00027       2.4     384     451 ..      67     136 ..      36     155 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00027
                 HHHHH-TTGGG---H.HHHHT-S..-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--.......------- CS
       NARP1 384 lkledkpkakeeeke.eaksael..seaerkklrkkakkaekkaekeeaekaekekekkaaekkakkedee 451
                  ++ dkpk  ++++  + k  el  + +e++k+++++k +ek+++k +a+ +e++ ++ +ae k+++ d++
  KKY23224.1  67 TSIGDKPKPMSKNQLkKLKRDELweAGREQRKAKRRQKNKEKRERKRAARGQEHN-SSGNAEGKEHELDQN 136
                 5566777655544431222223200223344444444444444444444432222.222333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1616  (0.0901333); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.46
# Mc/sec: 3282.58
//
Query:       KKY23225.1  [L=1460]
Description: putative nuclear condensin complex subunit smc4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-77  257.5   7.1      3e-76  255.7   7.1    2.0  1  SMC_N            RecF/RecN/SMC N terminal domain
    1.3e-24   86.8   0.0    4.1e-24   85.1   0.0    2.0  1  SMC_hinge        SMC proteins Flexible Hinge Domain
    6.2e-12   45.9   3.0    2.6e-05   24.2   0.1    3.5  3  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    4.5e-09   37.1   2.5    4.5e-09   37.1   2.5    6.7  3  AAA_23           AAA domain
    0.00056   19.6   0.0     0.0012   18.6   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
  ------ inclusion threshold ------
        2.8    8.5   0.0        2.8    8.5   0.0    7.2  6  ABC_tran         ABC transporter


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.7   7.1     1e-79     3e-76       2     219 ..     224    1446 ..     223    1447 .. 0.99

  Alignments for each domain:
  == domain 1  score: 255.7 bits;  conditional E-value: 1e-79
                  EEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEE.....SSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxx RF
       SMC_N    2 lkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkk.....lkie 93  
                  ++rl+++nFksyag++v++pf+ sf+++vGpNGSGKsn++d++lFv+G+r++ k+r+ kls+lih+s++++ ++++eve++f++  +      +++ 
  KKY23225.1  224 ISRLVMTNFKSYAGRQVVGPFHVSFSSVVGPNGSGKSNVIDSLLFVFGFRAS-KMRQGKLSALIHNSAQHQDLNFCEVEVHFQEILDLpggghEVMP 319 
                  89***********************************************988.*****************************664433344447999 PP

                  SSCEEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT....................................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................................................... RF
       SMC_N   94 keevsisrrvkrkgeseykingkevtkkevsellesagiske....................................................... 135 
                  ++++ +sr+++++++s+y++ng++ +++ v+ ll+++gi+ +                                                       
  KKY23225.1  320 DTQLIVSRKAFKNNSSTYYLNGRTTNFTTVTTLLREKGIDLDhkrflilqgevesiaqmkpkaanehddglleylediigtskyktpieeaatevet 416 
                  9************************************************************************************************ PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY23225.1  417 lnevcvekngrvqhvekekngledkknkalayikdenelaekqstlyqiyiaecednaavtqeaideiqgqldaelekhagsednikaleksykkta 513 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY23225.1  514 kefesmekstqemvkelsrfekesvkheerrkfisnkqkkaekaattsrlaasealsliekhtddierkseeiatlekemateeqelisireslkgk 610 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY23225.1  611 tqglsdqvaakqkslepwsakinekqsaiavaqseldilrekanagavaleeaqskigtieesiatkseeiaqrqaekhrlekdvrkindalqklah 707 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY23225.1  708 sepeiraqissarqkadearaslassqnqgnvlkglmrlkdsgriqgfhgrlgnlgtidqkydvaistacpsldnmvvdnvevgqqcidylrknnlg 804 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY23225.1  805 ranfilldrlakrdlspistpekaprlfdlvkpkdavfapafysvmqntlvandleqanriaygarrwrvvtldgqlidvsgtmsgggtrvakgams 901 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY23225.1  902 sklaaettkeqvqkleldrdelekqfqaftdkqreleatlrqkqeeipqletllqklnlevesgnrnladaqkrvmelaaelkgskkddsqlkalek 998 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY23225.1  999 hmsglqkeldqlhaqtadiegeiqalqdkimeiggvrlrgqkakvdglkqqinmlseevssaevattknqklkakhekakadaekelqslekdvakl 1095
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY23225.1 1096 eadveshsadasgskakvekaqealevkkeelsmlkkdldqrtsdlnstraieiemrnkleenqkvlsendkkarywqeklsklslqdvadlegaen 1192
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY23225.1 1193 epkqtptaetevdgedvvmgdaepeeerppqssrkqlptftkdelldlskdrlkaaiaaleertqnasidlsvlaeyrrrcnelasrtsdlnsalgt 1289
                  ************************************************************************************************* PP

                  .........................................................................CS-HHHHHHHHHHHHHHHHCCS-- CS
                  .........................................................................xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 .........................................................................lLSgGektLvalaLlfAiqkvkpa 159 
                                                                                           +LSgGektL++laL+fA++++kp+
  KKY23225.1 1290 rdaaksrldqlrtlrltgfmtgfsqislrlkemyqmitmggnaelelvdsldpfsegilfsvmppkkswknisNLSGGEKTLSSLALVFALHHYKPT 1386
                  ************************************************************************************************* PP

                  SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEEEEETTEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  160 plyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvtkvengvs 219 
                  ply++DeidaaLD++nv++va+++ke++knaQfivislr++m+e a++lvg++kv++ ++
  KKY23225.1 1387 PLYVMDEIDAALDFRNVSIVASYIKERTKNAQFIVISLRNNMFELAERLVGIYKVNHMTK 1446
                  ******************************************************887765 PP

>> SMC_hinge  SMC proteins Flexible Hinge Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   0.0   1.4e-27   4.1e-24       2     117 .]     753     866 ..     752     866 .. 0.97

  Alignments for each domain:
  == domain 1  score: 85.1 bits;  conditional E-value: 1.4e-27
   SMC_hinge   2 kgvlGrladlievdegyekAveaalgnrlqalvvedeetakkiieflkkknagratflpldrikqknkadgandknsgavplidlvevdde.lrkalry 99 
                 +g++Grl++l ++d++y++A+++a+ + l++ vv++ e+ +++i++l+k+n+gra+f+ ldr+ ++  ++  +++  +a +l+dlv+ +d+ +++a++ 
  KKY23225.1 753 QGFHGRLGNLGTIDQKYDVAISTACPS-LDNMVVDNVEVGQQCIDYLRKNNLGRANFILLDRLAKRDLSPISTPE--KAPRLFDLVKPKDAvFAPAFYS 848
                 799*********************966.********************************************998..7********************* PP

   SMC_hinge 100 llgdtlvvdsldeAeela 117
                 ++++tlv+++l++A+++a
  KKY23225.1 849 VMQNTLVANDLEQANRIA 866
                 ***************986 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   8.7e-09   2.6e-05       3      26 ..     250     288 ..     248     415 .. 0.83
   2 ?   -1.9   0.1      0.75   2.2e+03     101     203 ..     621     720 ..     589     755 .. 0.66
   3 !   20.4   0.0   1.3e-07   0.00038     233     296 ..    1360    1423 ..    1216    1423 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 8.7e-09
      AAA_21   3 vliGpNgsGKSnLLdaldllarl...............d 26 
                  ++GpNgsGKSn++d l +++++               +
  KKY23225.1 250 SVVGPNGSGKSNVIDSLLFVFGFraskmrqgklsalihN 288
                 58********************66544444444333332 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.75
      AAA_21 101 dkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrkerigllnifadyfgfakekrllqrlvrslklveiel 199
                 + +sle + ++++e++ + ++++++ ++  +++++ +   ++a  +i+   +s++  ++++   + ++++  + +    k+++ lq+l +s  ++++ +
  KKY23225.1 621 KQKSLEPWSAKINEKQSAIAVAQSELDILREKANAGAVALEEAQSKIGTIEESIATKSEEI---AQRQAEKHRLEKDVRKINDALQKLAHSEPEIRAQI 716
                 5677777777777777777777777777777777777777777777777777777777766...44444444455555555566666666666666555 PP

      AAA_21 200 sdlg 203
                 s  +
  KKY23225.1 717 SSAR 720
                 5554 PP

  == domain 3  score: 20.4 bits;  conditional E-value: 1.3e-07
      AAA_21  233 parelSdGtkrll..alltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltT 296 
                  ++++lS G k l   al+ al+   +  +l++ DE+++ L+ + ++ ++  +ke ++ +aQ+i+ +
  KKY23225.1 1360 NISNLSGGEKTLSslALVFALHHYKPT-PLYVMDEIDAALDFRNVSIVASYIKERTK-NAQFIVIS 1423
                  78899*******655888888888888.************************99999.9****976 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   2.5   1.5e-12   4.5e-09       1     176 [.     226     472 ..     226     517 .. 0.39
   2 ?  -18.9  38.5         6   1.8e+04      80     199 ..     508     646 ..     476     730 .. 0.65
   3 ?  -39.8  57.1         6   1.8e+04     100     136 ..     984    1022 ..     877    1303 .. 0.60

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 1.5e-12
      AAA_23   1 kLkienfrsf.rdqei.dFskgltlItGpNGaGKTTildAiklaLygetprlsrks..........grgfeksdveiese.............gkvkay 74 
                 +L + nf+s+ ++q +  F+  +  ++GpNG+GK+ ++d + ++++ ++++++ ++           ++++  +ve++++              +++ +
  KKY23225.1 226 RLVMTNFKSYaGRQVVgPFHVSFSSVVGPNGSGKSNVIDSLLFVFGFRASKMRQGKlsalihnsaqHQDLNFCEVEVHFQeildlpggghevmPDTQLI 324
                 68999*****65565657788999*************************99998764444433333222222222222223344444443322222222 PP

      AAA_23  75 velt.fenkdgry..................................trsiererelskkkgkttkkaklelleideleqfisellgskkiilnlilfl 138
                 v+++ f+n++ +y                                                                                      
  KKY23225.1 325 VSRKaFKNNSSTYylngrttnfttvttllrekgidldhkrflilqgeV--------------------------------------------------- 372
                 222234444444444444333333333333333333333333333331................................................... PP

      AAA_23 139 gqer...........................................................feefelkdkkerleelekeleeledekkllekl... 175
                    +                                                           +e++ l+dkk++  +++k+ +el       ek+   
  KKY23225.1 373 ---EsiaqmkpkaanehddglleylediigtskyktpieeaatevetlnevcvekngrvqhveKEKNGLEDKKNKALAYIKDENEL------AEKQstl 462
                 ...22222222222222222222222222222222222222222222222222222222222222222222222222222222222......2222222 PP

      AAA_23 176 .........e 176
                           
  KKY23225.1 463 yqiyiaeceD 472
                 2223333331 PP

  == domain 2  score: -18.9 bits;  conditional E-value: 6
      AAA_23  80 enkdgrytrsiererelskkkgkttkkaklelleideleqfisellgskkiilnlilflgqerfeefel.....kdkkerleelekeleeledekklle 173
                 ++k++   +++e + + ++++ k+ +  ++e+++++e+++fis++ ++ ++  + + + ++e    +e+     ++k+e+++ leke+ ++e+e   ++
  KKY23225.1 508 SYKKT--AKEFESMEKSTQEMVKELSRFEKESVKHEERRKFISNKQKKAEKAATTSRLAASEALSLIEKhtddiERKSEEIATLEKEMATEEQELISIR 604
                 22222..35788888888888999999999999999999999998888888777777777777555555555566666777777777666666666666 PP

      AAA_23 174 kl.......................eqekekekeleeleeeleeilkel 199
                 +                                +++e+++++  +++el
  KKY23225.1 605 ESlkgktqglsdqvaakqkslepwsA-------KINEKQSAIAVAQSEL 646
                 66666666666555543322222221.......4444444444333333 PP

  == domain 3  score: -39.8 bits;  conditional E-value: 6
      AAA_23  100 kgkttkkaklellei..deleqfisellgskkiilnlil 136 
                  kg+++++++l+ le+  + l++++++l  ++ +i   i+
  KKY23225.1  984 KGSKKDDSQLKALEKhmSGLQKELDQLHAQTADIEGEIQ 1022
                  111111111111111222222222221111111111111 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.9e-07    0.0012       2      46 ..     225     270 ..     224     276 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.9e-07
      AAA_29   2 krlqlvNWgtfdg.hti.eidlkgatlltGpsGsGKSTllDAiqalL 46 
                 +rl + N  ++ g +++ +++++ +  ++Gp+GsGKS ++D++ +++
  KKY23225.1 225 SRLVMTNFKSYAGrQVVgPFHVS-FSSVVGPNGSGKSNVIDSLLFVF 270
                 67888999999996555245544.799***************99885 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00093       2.8      15      32 ..     250     267 ..     246     313 .. 0.78
   2 ?   -1.7   2.1       1.3   3.9e+03      29     119 ..     503     603 ..     479     615 .. 0.47
   3 ?    0.0   1.9      0.37   1.1e+03      52     109 ..     658     730 ..     629     747 .. 0.62
   4 ?    1.0   2.6      0.19   5.6e+02      52     113 ..     936    1004 ..     879    1016 .. 0.52
   5 ?   -4.1   6.9         6   1.8e+04      58      80 ..    1047    1108 ..    1007    1183 .. 0.45
   6 ?    4.8   0.0     0.013        39     104     134 ..    1359    1393 ..    1240    1396 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00093
                 EEEESTTSSHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlklla 32 
                  +vG+nG+GKS ++  l+
  KKY23225.1 250 SVVGPNGSGKSNVIDSLL 267
                 589*********998875 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.3
                 HHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH......................HHHTCHHHHHHHSTTGGTTCBGES CS
                 xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx......................xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  29 kllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren......................esdeeiekalsklglkelkdtvvk 103
                 k+l + +k+t+ e +  +k+++e  +el++++ke+                 +                      +++e ++ + ++ +++e k + + 
  KKY23225.1 503 KALEKSYKKTAKEFESMEKSTQEmvKELSRFEKESVKH--------------EerrkfisnkqkkaekaattsrlAASEALSLIEKHTDDIERKSEEIA 587
                 33333333333333333333333333333333333333..............23344444222222234444444333334444444444444444444 PP

                 TTSGGS-HHHHHHHHH CS
                 xxxxxxxxxxxxxxxx RF
    ABC_tran 104 sspssLSgGqkqrval 119
                 +  +++   +++ +++
  KKY23225.1 588 TLEKEMATEEQELISI 603
                 4445555555555555 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.37
                 B-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHHHSTTGG........TTCBGESTTSGGS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxx........xxxxxxxxxxxxx RF
    ABC_tran  52 qeleslrkeigvlpqepqlfpeltvren.......esdeeiekalsklglke........lkdtvvksspssL 109
                   le+++++ig++++    ++e  ++++       ++ ++i++al+kl  +e         + +++++  +sL
  KKY23225.1 658 VALEEAQSKIGTIEESIATKSEEIAQRQaekhrleKDVRKINDALQKLAHSEpeiraqisSARQKADEARASL 730
                 5677788888888888666666644444566777444445777777777766554444443333333334444 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.19
                  B-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   52 qeleslrkeigvlpqepqlfpeltvren...........esdeeiekalsklglkelkdtvvksspssLSgGq 113 
                  + +  lr++ + +pq ++l ++l    n           ++++++ +++++l+ ++++d+ +k   +++Sg q
  KKY23225.1  936 ELEATLRQKQEEIPQLETLLQKL----NlevesgnrnlaDAQKRVMELAAELKGSKKDDSQLKALEKHMSGLQ 1004
                  11222233333333333333333....0222345555555555566666666666666666666666666655 PP

  == domain 5  score: -4.1 bits;  conditional E-value: 6
                  CHCEEEE-SS--S-TTSBHHHH.......................................H CS
                  xxxxxxxxxxxxxxxxxxxxxx.......................................x RF
    ABC_tran   58 rkeigvlpqepqlfpeltvren.......................................e 80  
                  +++i +l++e +  +  t +++                                        
  KKY23225.1 1047 KQQINMLSEEVSSAEVATTKNQklkakhekakadaekelqslekdvakleadveshsadasG 1108
                  44444444443333333322223433333222222222222222222222222222223332 PP

  == domain 6  score: 4.8 bits;  conditional E-value: 0.013
                  TTSGGS-HHHHHHHHHHHHHH....HTSSEEEEES CS
                  xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF
    ABC_tran  104 sspssLSgGqkqrvalarall....kkpkllllDE 134 
                  ++ s+LSgG+k   +la +++    k  +l+++DE
  KKY23225.1 1359 KNISNLSGGEKTLSSLALVFAlhhyKPTPLYVMDE 1393
                  667*********99999887611113345666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2844  (0.158626); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                       202  (0.0112667); expected 17.9 (0.001)
Passed Fwd filter:                       129  (0.00719505); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 3.40u 0.45s 00:00:03.85 Elapsed: 00:00:00.77
# Mc/sec: 5686.97
//
Query:       KKY23226.1  [L=308]
Description: hypothetical protein UCRPC4_g02954 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-58  195.9   0.5      1e-57  195.7   0.5    1.0  1  ELYS      Nuclear pore complex assembly


Domain annotation for each model (and alignments):
>> ELYS  Nuclear pore complex assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.7   0.5   5.7e-62     1e-57       1     218 [.      37     252 ..      37     254 .. 0.96

  Alignments for each domain:
  == domain 1  score: 195.7 bits;  conditional E-value: 5.7e-62
        ELYS   1 kLFiDrllsalaiqkdsgeaaklYPPkslqalrdlllqigsssevdllaKqslllYlLlDldasseeselaedFaaafglprklvllvqglwlLDhgef 99 
                 kLF+Dr+l+++++++    +++lYPP+++++lr+l+++i++ +  ++ +K++l++Y+L+D++++   s++ ++F +++ lp k+++l+ glw LD+g+ 
  KKY23226.1  37 KLFFDRILESIGLKQ----VTRLYPPTTNSELRTLFDKIVK-TGSADYQKHALIYYILKDCSRH--LSNADQQFVRQVYLPSKYLILITGLWELDRGHL 128
                 69************9....99********************.999***************9876..566778*************************** PP

        ELYS 100 eealelLtdPslspkefadkilqvLler..gdaslalaylravkpplssseavealfvllargsvteAfsfqRslsdkekreelleelvelclee.... 192
                 ++a+++LtdPsl p +f+d+il++L+++    + la++y+  v+ppl++ ++++a+f ll ++sv+eA+ f+++++d  ++++l+e+l+ +++++    
  KKY23226.1 129 SNAVDCLTDPSLMP-TFTDEILYTLIKHekPGDGLAMSYYLSVSPPLADDKVLNAYFDLLTESSVSEAYNFAQKQPDL-QHRQLFERLIVSIHTHrtge 225
                 *************9.*************555568*******************************************9.9**************99**9 PP

        ELYS 193 .aarklkeLlelpldeeEekllekfLl 218
                  +a ++ eL+ lp+++eEe+++e++Ll
  KKY23226.1 226 dRATRAIELVALPFTAEEEAWFEECLL 252
                 977999*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.51
# Mc/sec: 1818.93
//
Query:       KKY23227.1  [L=740]
Description: putative phosphatidylinositol-4-phosphate 5-kinase its3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-99  332.5   0.1    3.8e-99  331.4   0.1    1.6  1  PIP5K     Phosphatidylinositol-4-phosphate 5-Kinase


Domain annotation for each model (and alignments):
>> PIP5K  Phosphatidylinositol-4-phosphate 5-Kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.4   0.1  2.1e-103   3.8e-99       2     272 ..     176     490 ..     175     492 .. 0.96

  Alignments for each domain:
  == domain 1  score: 331.4 bits;  conditional E-value: 2.1e-103
                 SS-EEEE----SSS--EEEETTSSEEEEEE-HHHHHHHHHHHHHHHHHHTT-TT--S--EEEEEEEE.ETTEEEEEEEEE-SS-TTS--SEEEEE-S-- CS
       PIP5K   2 ksalkelsseGkSgsffylteDkkfiiKtitksevkflrkllpeYyehvkenpnsLltrfyglhrvklkggkkvrfvVmenlfptdkeiheryDLKGst 100
                 k++l+el+s+GkSgsffy+++D+k+iiKti+++e+k+lr++l++Yy+h+ +npn+L+++fyglhrvk+++g+k++fvVm+nlfp++++ih+++DLKGst
  KKY23227.1 176 KYILSELGSPGKSGSFFYFSRDYKYIIKTIHHAEHKLLRRILKDYYKHICDNPNTLISQFYGLHRVKIPYGRKIHFVVMNNLFPPHRDIHQTFDLKGST 274
                 689************************************************************************************************ PP

                 TT-S--HHHH.TSSS-EEEHHHHHHHST.EEE-HHHHHHHHHHHHHHHHHHHHTTB-S-EEEEEEEB---------------------------..... CS
       PIP5K 101 vgReakkkee.ekkektlkDlDliekkeklklgkekreelleqlekDvefLeslnimDYSLLlGihnsekeekeekkesessssekesekseee..... 193
                 vgR  k+++  ++ + tlkDl++ +++ +l++g+ kr+ +++q+e+Dv++L++l+imDYS+L+Gih+ +k ++e+ ++++ + +++  ++ +e+     
  KKY23227.1 275 VGRDFKEEDLeSNPRATLKDLNWLRRNYHLEFGPGKRDVFIKQMERDVALLQRLKIMDYSMLVGIHDLTKGNEEKLRDKTLQVFQPGGDRPSEDqstql 373
                 ******77662555678******************************************************************999888777767899* PP

                 ......................................-----------------SEEEEESSSSEEEEEEEEE----B-------------------- CS
       PIP5K 194 ......................................aseeeeeseeeedeegekakeensedgkevyylgiIDiLqkynlkKklehalkslkkdkks 254
                                                       + ++++++ +++d++g +a++e+ ++g+++yylgiID+L++y++ Kk eh++ksl+ ++++
  KKY23227.1 374 srtpsrmetirqaqelrktlkrekpipmgltqarmpeeMLDDRKDKIFYSDDGGFRANHEDGREGEKIYYLGIIDCLTHYGVIKKGEHFWKSLRDNSTQ 472
                 *************************************99999********************************************************* PP

                 --TTHHHHHHHHHHHHHH CS
       PIP5K 255 isavpPkeYaeRFlkfie 272
                 is +pP  Y +RF++fi+
  KKY23227.1 473 ISPIPPFPYGQRFINFIT 490
                 ****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 4884.61
//
Query:       KKY23228.1  [L=212]
Description: putative histone h1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-29  102.2   0.8    4.4e-29  100.7   0.8    1.9  1  Linker_histone  linker histone H1 and H5 family


Domain annotation for each model (and alignments):
>> Linker_histone  linker histone H1 and H5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   0.8   2.4e-33   4.4e-29       1      74 []      19      91 ..      19      91 .. 0.97

  Alignments for each domain:
  == domain 1  score: 100.7 bits;  conditional E-value: 2.4e-33
  Linker_histone  1 hpsykdMikeAIkalkerkGsSrqaIkkyikakykvv.dvskfksllkkalkkgvekgelvqpkgkGasGsfKLa 74
                    h sykdMikeAI +lker+GsSrqaIkky++ ++k+  + + f+ +++ka+k+gvekg+++qpk  GasG++KLa
      KKY23228.1 19 HASYKDMIKEAILKLKERNGSSRQAIKKYVQVNNKIPaTGASFDAQFNKAIKSGVEKGDFTQPK--GASGPVKLA 91
                    89**********************************9888999*********************..*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2037  (0.113615); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.40s 00:00:01.24 Elapsed: 00:00:00.53
# Mc/sec: 1212.44
//
Query:       KKY23229.1  [L=313]
Description: hypothetical protein UCRPC4_g02957 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 2043.49
//
Query:       KKY23230.1  [L=196]
Description: putative nadh-ubiquinone oxidoreductase 213 kda subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-05   25.6   8.4    1.8e-05   25.1   6.9    2.0  2  Tim17     Tim17/Tim22/Tim23/Pmp24 family


Domain annotation for each model (and alignments):
>> Tim17  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   6.9   9.9e-10   1.8e-05      50     109 ..      52     114 ..      12     117 .. 0.76
   2 ?    2.0   0.1     0.015   2.7e+02      15      74 ..     108     130 ..     104     171 .. 0.60

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 9.9e-10
       Tim17  50 pslGknfgvvgglysgiecaleklRgkediwnsvaAGaltGall..r.agpqaaavgaiggaa 109
                   +   f+  ++ y+++ +a  +lR+k+d +n++++G+++Gal   r  ++ ++++ ++++a+
  KKY23230.1  52 GGTIAVFAGAAAAYQFTATASANLREKNDYINEAIGGFFGGALTglRaRSMPSVLGYGAAFAV 114
                 2222345555899*****************************974453446666666777776 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.015
       Tim17  15 lGavfglvkgsrradtpapskerlreglrsvgkrgpslGknfgvvgglysgiecaleklR 74 
                 +G                                       f+v+ g ++ +  ++++++
  KKY23230.1 108 YG-------------------------------------AAFAVCLGAFNYTGGLISGAK 130
                 44.....................................445555555554444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.32s 00:00:00.84 Elapsed: 00:00:00.50
# Mc/sec: 1172.88
//
Query:       KKY23231.1  [L=1180]
Description: putative ubiquitin carboxyl-terminal hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-48  160.1   7.3    1.3e-15   57.1   1.5    4.9  5  RPT       A repeated domain in UCH-protein
    2.1e-35  122.5   8.8    1.3e-34  119.9   8.8    2.0  1  UCH       Ubiquitin carboxyl-terminal hydrolase
  ------ inclusion threshold ------
       0.92    9.0  10.6       0.27   10.8   0.1    3.0  2  UCH_1     Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> RPT  A repeated domain in UCH-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.1e-09   6.7e-06       6      54 ..     188     236 ..     188     238 .. 0.95
   2 !   36.1   0.0   7.8e-13   4.6e-09       3      57 ..     255     312 ..     253     314 .. 0.90
   3 !   40.7   0.1   2.9e-14   1.7e-10       1      58 [.     319     382 ..     319     383 .. 0.91
   4 !   57.1   1.5   2.1e-19   1.3e-15       1      58 [.     393     451 ..     393     452 .. 0.95
   5 ?   -3.5   0.0       1.8   1.1e+04      13      22 ..     639     648 ..     634     648 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.1e-09
         RPT   6 yklLgidentdDdviitayqvkleddpsqkdklrrALkvIAeeRkSelL 54 
                 y+ Lg++++++D  i+ ay+ + + dp+++  +   L+++A++R+Se L
  KKY23231.1 188 YRGLGVTPDVSDAAILYAYERQCATDPDNAHRYLDYLRSVAHSRQSEPL 236
                 6779*******************999********************988 PP

  == domain 2  score: 36.1 bits;  conditional E-value: 7.8e-13
         RPT   3 eeAyklLgi...dentdDdviitayqvkleddpsqkdklrrALkvIAeeRkSelLlnf 57 
                  eAy+++g+    + td+++ii++++++++d+p q+ ++r +Lk+I+ + +S+++l  
  KKY23231.1 255 FEAYQFFGLdarYPPTDENYIIGVFSSRIADAPIQESDARSCLKTIGTQMNSQRILDV 312
                 69******86556679***************************************975 PP

  == domain 3  score: 40.7 bits;  conditional E-value: 2.9e-14
         RPT   1 dveeAyklLgidentdDdviitayqvkl.ed.....dpsqkdklrrALkvIAeeRkSelLlnfL 58 
                 ++e+A+++L+++++t Dd+i +   vkl +d     + s + k+++A+k+IA++R S  L ++L
  KKY23231.1 319 TYEQALAFLDVTRDTADDFITASVAVKLgDDlsadeRRSMEGKCQKAVKIIADHRHSLALSQWL 382
                 79**************************64488774559999********************98 PP

  == domain 4  score: 57.1 bits;  conditional E-value: 2.1e-19
         RPT   1 dveeAyklLgiden.tdDdviitayqvkleddpsqkdklrrALkvIAeeRkSelLlnfL 58 
                 d+ eAy+lLgid+  +dD +i+t yq +led+ ++ d++++AL++IA ++ S  L+++L
  KKY23231.1 393 DIGEAYSLLGIDDRtLDDQMILTTYQLRLEDNKNNTDTYNQALRAIARHKSSIYLEQYL 451
                 6889*******5555*******************************************9 PP

  == domain 5  score: -3.5 bits;  conditional E-value: 1.8
         RPT  13 entdDdviit 22 
                 +nt+Dd+++t
  KKY23231.1 639 QNTPDDEVMT 648
                 689***9987 PP

>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.9   8.8   2.1e-38   1.3e-34       1     248 [.     467    1060 ..     467    1082 .. 0.92

  Alignments for each domain:
  == domain 1  score: 119.9 bits;  conditional E-value: 2.1e-38
                  -EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-...........TT.TTS.TTHHHHHHHHHHHHHHSH-CCEE--......... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......... RF
         UCH    1 tGlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkel..........nesnplgkkgelakalkdlfkellkskskavsP......... 78  
                  +GlsN+GntCy+ns+lQ+ f+i+ +rd++l+ ee   + + + +l          +  ++ ++++++a++l++lf++++ + + +++P         
  KKY23231.1  467 VGLSNIGNTCYLNSLLQFCFTIKGIRDIVLNFEEYRMDINGE-SLaykkvgsrtvS-LSEVQRSQHFAEELQKLFQSMITTPRVSITPeerlarltl 561 
                  6******************************76554443333.3335566654321.122333446*************889999************ PP

                  ................................................................................................. CS
                  ................................................................................................. RF
         UCH   79 ................................................................................................. 78  
                                                                                                                   
  KKY23231.1  562 igpstyeaarrrstlhgqpplmtsvgevaaadpestigdismsgtaaetvkspvdatlntaggfsthasseatltsrqntpddevmtdsgieeqqeq 658 
                  ************************************************************************************************* PP

                  .................................................................................HHHHHHHHHHSGGGTS CS
                  .................................................................................xxxxxxxxxxxxxxxx RF
         UCH   79 .................................................................................kklkktlsklaksfsg 94  
                                                                                                    + k+t++ l+     
  KKY23231.1  659 ilndkenlppsktdevgaattnqppeaaplgeaspskintqagyfeqeqtqthphnslqtvaaqalqapnrpppipprpkpLERKSTIADLEDI--- 752 
                  ******************************************************************************9888888888888765... PP

                  SSTCEHHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCTTSHHHHHH-EEEEE.............................................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................. RF
         UCH   95 ykqqDaqEflaflLdqlhedlnrevaeekwkkhlkrndslitdlfegqlks.............................................. 145 
                   kqqD++E+++++L ql+ +++      +  +++ ++ + i+dlf g++k+                                              
  KKY23231.1  753 TKQQDVTEVMSNVLFQLSCAIKP-----TAFDKDGEQVDQIKDLFFGKTKTttlernrdpiqeiqrfsdikinvadgprdiyqaleaafdvqdvisn 844 
                  9**********************.....446778888999********************************************************* PP

                  ......EEEEEEB-SEEEEEEESEEETEE...EEE--SEEB--SEEE-GGGBSS-BTTS-TCS-B................................ CS
                  ......xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................ RF
         UCH  146 ......klklkrlPeiLiihlkRfsynss...ksKlntkvefpeeldlssylaeekkkkteekkk................................ 201 
                          ++++lP+i++++++R +++ +     K+ +++e  +++ l+++l+++++++   +++                                
  KKY23231.1  845 gnpalqFSSISQLPPIFQVQVQRTQFDVAlkrTYKSINHLELFQTIFLDRFLDDDVDSSLMGRRReawewkkelaalearqeelsetkdhpnasqil 941 
                  *****9899*****************999888899999999999*****999999988877776689999999999999999999999999999*** PP

                  .........................................................................EEEEEEEEEESCTTSEEEEEEEEC CS
                  .........................................................................xxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH  202 .........................................................................YeLiavvvHsGslssGHYvayikn 225 
                                                                                           Y+L++++vH+G++s GHY++yi +
  KKY23231.1  942 seahevlislqhsqsskpsseddtssitvlpttissleqlsasasrelakitsqitdlrqkiqtqytdlrqypYSLHSIFVHRGTSSFGHYWIYIYD 1038
                  ************************************************************************************************9 PP

                  TTTTEEEEEETTEEEEE-HHCCC CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
         UCH  226 ekngkWykydDetvkevkeeeev 248 
                    ++ W+ky+D+tv+ev+++ ev
  KKY23231.1 1039 FVKEIWRKYNDSTVTEVSHD-EV 1060
                  999**************976.43 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   4.5e-05      0.27       1      31 [.     467     497 ..     467     512 .. 0.91
   2 ?   -1.4   6.3      0.23   1.4e+03     236     293 ..     908    1033 ..     846    1052 .. 0.46

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.5e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   1 sGLEnhivnsYlNslLQvlyfipplrnlals 31 
                 +GL n  +++YlNslLQ  + i+ +r ++l+
  KKY23231.1 467 VGLSNIGNTCYLNSLLQFCFTIKGIRDIVLN 497
                 7****************99999999988765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.23
                  x...........................................................xxxxxxxxxxxxxxxxxx................... RF
       UCH_1  236 t...........................................................knwlpleiklsldedknl................... 254 
                  +                                                            ++lp+ i+        l                   
  KKY23231.1  908 RreawewkkelaalearqeelsetkdhpnasqilseahevlislqhsqsskpsseddtssITVLPTTISS-------Leqlsasasrelakitsqit 997 
                  0444444445555555555555555555544444444444444444444444444444321333333222.......02222223444455554422 PP

                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  255 eeklkeerekakaekeikvYeLqsvvvhigdskesghLv 293 
                  +  l+++ +++ ++ + + Y+L+s+ vh+g+s+  gh+ 
  KKY23231.1  998 D--LRQKIQTQYTDLRQYPYSLHSIFVHRGTSS-FGHYW 1033
                  2..222222224445556677777777777555.66665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       949  (0.052931); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.53
# Mc/sec: 6679.12
//
Query:       KKY23232.1  [L=485]
Description: putative protein-tyrosine phosphatase 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-48  164.3   0.0    1.5e-39  136.0   0.0    3.1  2  Y_phosphatase    Protein-tyrosine phosphatase
    0.00051   20.1   0.0    0.00077   19.5   0.0    1.3  1  Y_phosphatase3   Tyrosine phosphatase family
    0.00074   19.7   0.0     0.0018   18.4   0.0    1.7  1  PTPlike_phytase  Inositol hexakisphosphate
     0.0014   18.5   0.1     0.0037   17.1   0.0    1.7  2  DSPc             Dual specificity phosphatase, catalytic doma


Domain annotation for each model (and alignments):
>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.0   0.0   3.3e-43   1.5e-39       3     202 ..      52     281 ..      50     292 .. 0.76
   2 !   22.0   0.0   2.2e-08   9.8e-05     203     233 ..     328     358 ..     307     360 .. 0.89

  Alignments for each domain:
  == domain 1  score: 136.0 bits;  conditional E-value: 3.3e-43
                    GGSSSTTS-B-CTTEEEBTTTTTTTTEEEEEEE.....EECTE...EEEEEEEE---GGGHHHHHHHHHHT..T--EEEEESBSEETTEESS---S CS
  Y_phosphatase   3 eknRykdilpydksrVklkssegpsdYInAnyi.....kgykk...ekkyIatQgPlkstvedFWrmvwqe..kvkvivmLtsleekgrekcaqYw 88 
                    ++nRy +i p  +sr+ lk  eg++dY+nA+ i             e kyIatQgP k   ++FW+mv+qe  +  v+vmLt+  e +rekcaqY+
     KKY23232.1  52 SRNRYLNIQPWANSRIALKVPEGQCDYVNASPIvlkdsA---GhgsEDKYIATQGP-K-DTSHFWHMVLQEsqEPAVVVMLTQTHEGNREKCAQYY 142
                    79*******************************555433...0455**********.4.5579*******954578******************** PP

                    -...........SSTSSEEEETTEEEEEE...............EEEEEESSEEEEEEEEEETTTTE.......................EEEEEE CS
  Y_phosphatase  89 p...........eeeeesleygkikvtlk..............ekekedekeyvlrelevkkkkees.......................eerevk 136
                    p           +               +               ++ +  ++  l           +                       ++r+v+
     KKY23232.1 143 PlsedmptislpS---------------EqgagsesdephdpfYEQDQPLASGSL-----------TlvelindptsrseirklnlvigeQTRTVY 212
                    *443333333331...............222221111122221111111222222...........134444444455788889999998899*** PP

                    EEEESSS-SSSSG..SCCHHHHHHHHHHHHHH.STTSS-EEEECSSSSHHHHHHHHHHHHHHHHHHHSE CS
  Y_phosphatase 137 qlqytnWpdhgvp..esaksllklirkveksk.eaksgpvvVhCsaGvgRtgtfvaldillqqleaeee 202
                    ++ +++Wpd   p  e+ ++ll+li++   +  +++ +p +VhCsaGvgRtgtf+ald+l+++le++  
     KKY23232.1 213 HYLFKGWPDFAKPegEDRQALLELIKQTSLRVgDPSVNPRIVHCSAGVGRTGTFIALDYLMKELENGAM 281
                    *************88889999******999999999****************************99654 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 2.2e-08
                    EEHHHHHHHHHTTSTTSS-SHHHHHHHHHHH CS
  Y_phosphatase 203 vdvlqivkelrkqRpgmvqtleqyiflyevi 233
                      ++q+v+ lr+qR++mv ++ qy f+yev+
     KKY23232.1 328 DLIYQTVNLLREQRMMMVMNEIQYSFIYEVL 358
                    6799*************************97 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.7e-07   0.00077     110     198 ..     237     346 ..     163     369 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.7e-07
  Y_phosphatase3 110 yrkvfealadee...pvlfHCtaGKDRTGvlaalllsllGvdeedivaDYlltneyleelrerlkakleeellaea................... 182
                     +++    + d +   p ++HC+aG  RTG ++al + + ++++ ++v D+        + +++ ++++ ++ +  a                   
      KKY23232.1 237 IKQTSLRVGD-PsvnPRIVHCSAGVGRTGTFIALDYLMKELENGAMVPDFSKPSSSAVTTNSKSATSNGNSSKT-Aqfspsssgspndegtsedl 329
                     3333333344.156899*********************************975555333333332222222222.13466777777777776666 PP

  Y_phosphatase3 183 .leellsvrpeyleaal 198
                      ++++   r++ +  ++
      KKY23232.1 330 iYQTVNLLREQRMMMVM 346
                     64444444444444444 PP

>> PTPlike_phytase  Inositol hexakisphosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.1e-07    0.0018     107     155 ..     219     273 ..     170     274 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.1e-07
                      E-TTS---HHHHHHHHHHHHTS-T......T-EEEEE-SSSSHHHHHHHHHHHHH CS
  PTPlike_phytase 107 itdekapeeedfdalvsilkeape......ktalvfnCqmGrgRTTtamviatLl 155
                       +d   pe ed +al++++k+++        ++ +++C++G+gRT t++++ +L+
       KKY23232.1 219 WPDFAKPEGEDRQALLELIKQTSLrvgdpsVNPRIVHCSAGVGRTGTFIALDYLM 273
                      689999****************666**8887888***************999998 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   8.3e-07    0.0037      77      99 ..     253     276 ..     249     285 .. 0.85
   2 ?   -3.3   0.1       1.6   7.4e+03     108     125 ..     335     352 ..     332     361 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 8.3e-07
                 EEEESSSSSHHHHHHH.HHHHHHH CS
        DSPc  77 lVHCqaGisRSatlii.aYlmktk 99 
                 +VHC aG+ R++t+i+  Ylmk+ 
  KKY23232.1 253 IVHCSAGVGRTGTFIAlDYLMKEL 276
                 6************87527***975 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.6
                 HHHHHHSTT-SSTHHHHH CS
        DSPc 108 eflkerrpaispnagfir 125
                 ++l+e+r +++ n+ + +
  KKY23232.1 335 NLLREQRMMMVMNEIQYS 352
                 567777777777754444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 2927.36
//
Query:       KKY23233.1  [L=984]
Description: putativelike mg2+ transporter family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-13   48.3   0.1    1.5e-12   47.5   0.1    1.3  1  CorA      CorA-like Mg2+ transporter protein


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.1   8.2e-17   1.5e-12      92     290 ..     329     532 ..     318     540 .. 0.76

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 8.2e-17
        CorA  92 devikrlkdeggkpkspgellyrlldeivdrlfellekleeeldeledel.edstkkeilrelaqlrrrlvklrralapnrevlkrllakaddklldde 189
                 +ev +++      pk   ++l  +++ ++ + +++l+  +e+   le+ + ++  +++ +rel +   +  +  + +a++r++ k l+++ad  ++d +
  KKY23233.1 329 REVKDDTY---FYPKFIRTVLDDIFNHLTRSWETVLDLASEHQTILENKIyDQPADESRARELWANSFQWLRADKLMAQHRNLTKVLKTHADVLTEDVK 424
                 55555555...778888999******************************9888889999999999988888888888888888555555555554444 PP

        CorA 190 dkey...lrdlldeler........llemlealrerleslqdtyssllserlNrvmkvLTvltaiflPlTlitGiyGmNfkglPelewsygypfvlllg 277
                 ++     l++  +eler        l++ +e l  +l +  ++  s+ s + N  m +L+ +t +flPlT +++++GmN+ +            ++ ++
  KKY23233.1 425 ASAEikfLSEAPNELERlgknlesnLVKSTEDLITLLYQSVSIRDSRRSLEFNASMARLSWITFVFLPLTAVASFFGMNTTWVKTGPDIK----WYGIL 519
                 443333477777777777777766888888888888888888888999999******************************966444444....23345 PP

        CorA 278 lmallailllfwf 290
                 ++al+ ++ l+w+
  KKY23233.1 520 ASALFGLVFLIWV 532
                 5555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (984 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.51
# Mc/sec: 5823.90
//
Query:       KKY23234.1  [L=1085]
Description: hypothetical protein UCRPC4_g02962 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   15.7   3.0      0.019   15.7   3.0    5.0  6  NICE-1     Cysteine-rich C-terminal 1 family


Domain annotation for each model (and alignments):
>> NICE-1  Cysteine-rich C-terminal 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.0   2.2         1   1.8e+04      15      25 ..     270     280 ..     262     285 .. 0.50
   2 ?   -2.8   0.7      0.63   1.1e+04      23      23 ..     500     500 ..     465     532 .. 0.51
   3 ?   -2.4   1.4      0.48   8.5e+03      11      30 ..     699     718 ..     694     733 .. 0.62
   4 ?   -4.1   3.0         1   1.8e+04      12      25 ..     834     847 ..     822     854 .. 0.70
   5 ?   15.7   3.0   1.1e-06     0.019      21      62 ..     972    1012 ..     964    1015 .. 0.69
   6 ?   -1.3   0.9      0.21   3.8e+03      37      60 ..    1041    1064 ..    1033    1074 .. 0.50

  Alignments for each domain:
  == domain 1  score: -6.0 bits;  conditional E-value: 1
      NICE-1  15 pcpaptpapas 25 
                   p p+p+p s
  KKY23234.1 270 EIPPPAPEPPS 280
                 34444444443 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.63
      NICE-1  23 p 23 
                 p
  KKY23234.1 500 P 500
                 2 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.48
      NICE-1  11 qgpapcpaptpapasssscc 30 
                  g+ap  ap+ +pa +++  
  KKY23234.1 699 AGSAPEEAPAEEPADAAAEA 718
                 57788777777776655433 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 1
      NICE-1  12 gpapcpaptpapas 25 
                  p p pap+p+p +
  KKY23234.1 834 EPEPEPAPEPEPEA 847
                 45566777776654 PP

  == domain 5  score: 15.7 bits;  conditional E-value: 1.1e-06
      NICE-1   21 papassssccgsgsgccgdsgccgssstscccfprrrrrqrr 62  
                  p    sss  g+g+g +gd g+ g ss++     rrrrr+ +
  KKY23234.1  972 PIDEESSSSSGGGGGGGGDGGGGGGSSSN-NSHHRRRRRKHH 1012
                  44555667778899999**9999966555.556666666654 PP

  == domain 6  score: -1.3 bits;  conditional E-value: 0.21
      NICE-1   37 cgdsgccgssstscccfprrrrrq 60  
                  +g  ++ gs + + +    rrrr 
  KKY23234.1 1041 SGSGSGTGSGTKAAADEEERRRRS 1064
                  333344454444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1085 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1148  (0.0640303); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                       108  (0.00602376); expected 17.9 (0.001)
Passed Fwd filter:                        50  (0.00278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.44u 0.50s 00:00:02.94 Elapsed: 00:00:00.80
# Mc/sec: 4073.34
//
Query:       KKY23235.1  [L=1748]
Description: putative 20s cyclosome subunit (apc1) [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-24   86.1   1.2    2.8e-24   86.1   1.2    2.3  3  ANAPC1    Anaphase-promoting complex subunit 1
    4.1e-07   30.1   3.5    7.8e-05   22.9   0.0    3.9  4  PC_rep    Proteasome/cyclosome repeat


Domain annotation for each model (and alignments):
>> ANAPC1  Anaphase-promoting complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   1.2   3.1e-28   2.8e-24       1     129 [.     132     253 ..     132     254 .. 0.78
   2 ?   -2.2   0.0      0.64   5.8e+03      75     114 ..     518     549 ..     474     579 .. 0.68
   3 ?   -4.2   0.0         2   1.8e+04      41      65 ..    1121    1145 ..    1117    1169 .. 0.72

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 3.1e-28
      ANAPC1   1 aLvVllkdqahiyflsGeshtvpLpFevasvfplpkGlllqRkpeedqapprslrnpsappnsfldsssplltsssqtssqkttfstesrgspkrlslt 99 
                 aLvV+l++q+h+yflsG+ h++pL Fev+s+fp+p G++lqR +    ++ +s+++p +ppnsf +s     +ss + +sq+     +s++ ++++s+ 
  KKY23235.1 132 ALVVILQSQIHVYFLSGDNHVIPLSFEVESAFPTPTGVVLQRRLP---RIIDSTSQPLVPPNSFASSLLTPRLSSGFPFSQEPGP-RPSLTITEEPSHA 226
                 7*******************************************6...567999***********77666554544444444333.2244444444444 PP

      ANAPC1 100 lsstleskkdsslPslfsLtdPlsevglvv 129
                 +s+     ++ ++P+lf L dP se+glvv
  KKY23235.1 227 RSKQ---PENIDIPRLFYLLDPQSEIGLVV 253
                 4444...44555*****************8 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.64
      ANAPC1  75 ssqtssqkttfstesrgspkrlsltlsstleskkdsslPs 114
                  + ++   t+++t sr++ +++s+t++ +         P 
  KKY23235.1 518 NMAKEVIFTKIETVSRNRGTQPSTTSTVK--------RPH 549
                 44455556778888999988888776665........333 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 2
      ANAPC1   41 qRkpeedqapprslrnpsappnsfl 65  
                  q + +++q+++ +l+ +s+p +s +
  KKY23235.1 1121 QSNRDKQQEIATTLKSSSIPHHSAI 1145
                  5555666777777777777777655 PP

>> PC_rep  Proteasome/cyclosome repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.1    0.0028        25       2      14 ..    1402    1414 ..    1401    1423 .. 0.85
   2 ?   -1.9   0.1      0.65   5.8e+03       1      16 [.    1447    1462 ..    1447    1466 .. 0.83
   3 !   22.9   0.0   8.7e-09   7.8e-05       1      27 [.    1590    1616 ..    1590    1620 .. 0.93
   4 ?   -2.8   0.0       1.2   1.1e+04       9      23 ..    1652    1666 ..    1652    1668 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0028
                  HHHHHHHHCTTST CS
      PC_rep    2 AllALGlihaGsg 14  
                   ++++Gl++aGs 
  KKY23235.1 1402 GIMGIGLLYAGSQ 1414
                  79*********86 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.65
                  HHHHHHHHHCTTSTCH CS
      PC_rep    1 GAllALGlihaGsgne 16  
                  +A ++LG i+ G g +
  KKY23235.1 1447 AAGFSLGFINIGKGKD 1462
                  6999*****9998766 PP

  == domain 3  score: 22.9 bits;  conditional E-value: 8.7e-09
                  HHHHHHHHHCTTSTCHHHHHHHHHHHH CS
      PC_rep    1 GAllALGlihaGsgneeaislLkpyls 27  
                  G +lALGl +aGsg++++++lL +yl+
  KKY23235.1 1590 GLCLALGLRFAGSGSQAVRNLLVQYLD 1616
                  569**********************97 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 1.2
                  HCTTSTCHHHHHHHH CS
      PC_rep    9 ihaGsgneeaislLk 23  
                  ++aG+g+  ++  L+
  KKY23235.1 1652 VMAGTGDLQVFRRLR 1666
                  79****998876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1748 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.50
# Mc/sec: 10483.90
//
Query:       KKY23236.1  [L=705]
Description: hypothetical protein UCRPC4_g02964 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   11.7   0.0       0.29   10.8   0.0    1.4  1  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.6e-05      0.29      55     118 ..     294     362 ..     283     370 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.6e-05
     DUF4131  55 nandlsqlles.....gqeviveGvvaslpeltgsgtrfvlevervlsagktkpvsgrvlvtvpkspae 118
                 ++++ ++ +++     +  v v   ++++ ++++s++    + ++  s++ t+p  g+ lvt++++ a+
  KKY23236.1 294 SVSPSHRHTNLllvypSGIVKVYQCIQEQSRQSRSRRGSSGTMDSMTSKSSTQPFGGKFLVTLYSNFAK 362
                 44455555555556679999*****************999999999******************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 4254.27
//
Query:       KKY23237.1  [L=468]
Description: putative golgi transport complex component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-35  122.3   0.4    1.5e-35  122.3   0.4    1.8  2  COG5      Golgi transport complex subunit 5
  ------ inclusion threshold ------
        0.2   11.9   1.5        5.4    7.2   0.4    2.6  2  SesA      N-terminal domain on NACHT_NTPase and P-loop NTPase


Domain annotation for each model (and alignments):
>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3   0.4   1.6e-39   1.5e-35       4     132 .]      16     145 ..      13     145 .. 0.99
   2 ?   -3.1   0.1      0.93   8.4e+03      75      75 ..     306     306 ..     281     332 .. 0.43

  Alignments for each domain:
  == domain 1  score: 122.3 bits;  conditional E-value: 1.6e-39
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX-TTHHHHHH CS
        COG5   4 LepdFdpksfanallkatnnnddteldlstplkrlnydiqeldkrlrqlitsnhleLlehlskskslss.vlselksslesLsasyerlkskvlepyee 101
                 L +dF+p sfan l+ atnn +dt+ldlstpl+r+ +d+qe+d+++++l++s++ +Lleh+++++++ + +l+e++++l +L+  y+rl+++vl++++e
  KKY23237.1  16 LATDFSPYSFANGLVTATNNPTDTPLDLSTPLSRVLFDVQEIDTHIHNLTSSSAIPLLEHTQRQTKAAGtILKEVDTQLVALNRGYQRLEEEVLKRWQE 114
                 889************************************************************************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        COG5 102 aeklqsalkrlhqtldLlrralrflhlskqL 132
                 aek + a+ + ++ l+L r+++r+l l++qL
  KKY23237.1 115 AEKTRIAATKSWEVLRLTRAVSRCLALARQL 145
                 ******************************8 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.93
                 X CS
        COG5  75 s 75 
                  
  KKY23237.1 306 P 306
                 2 PP

>> SesA  N-terminal domain on NACHT_NTPase and P-loop NTPases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.011        98      58      84 ..      65      96 ..      49     119 .. 0.70
   2 ?    7.2   0.4    0.0006       5.4      44     100 ..     114     170 ..     102     175 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.011
        SesA 58 tesaikpvlesckekatkleeifekv.....a 84
                t s++ p+le+ + + ++  +i+++v     a
  KKY23237.1 65 TSSSAIPLLEHTQRQTKAAGTILKEVdtqlvA 96
                344489********************544333 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0006
        SesA  44 daksqlesskldedtesaikpvlesckekatkleeifekv.apapadsrleryrkavr 100
                 +a+++  +++++++    ++ ++ +c + a++l++ +e++  ++p  sr++  ++ vr
  KKY23237.1 114 EAEKTRIAATKSWEVLR-LTRAVSRCLALARQLQAQLEELgSRTPTLSRTDDHKALVR 170
                 34444444444555554.9*********************555555598888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 3030.63
//
Query:       KKY23238.1  [L=245]
Description: putative 28 kda heatand acid-stable [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-29  101.5  17.2    2.7e-29  101.5  17.2    3.2  3  PP28        Casein kinase substrate phosphoprotein PP28


Domain annotation for each model (and alignments):
>> PP28  Casein kinase substrate phosphoprotein PP28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   4.9      0.01   1.9e+02      20      49 ..      60      96 ..      41     102 .. 0.63
   2 !  101.5  17.2   1.5e-33   2.7e-29       1      85 []     122     207 ..     122     207 .. 0.96
   3 ?   -0.2   5.9     0.079   1.4e+03      30      52 ..     207     229 ..     205     234 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.01
        PP28 20 e.......kkaekpkelsRrEreaiekqkakeryekl 49
                +       +++  +++l+R +r ++ kq++++   k 
  KKY23238.1 60 SedeagpsQSTGGDQDLTREQRRELAKQRKQAAIAKK 96
                1344566566666678888888888888888776665 PP

  == domain 2  score: 101.5 bits;  conditional E-value: 1.5e-33
        PP28   1 NPNrvkkkknqklaealdeekkaekpk.elsRrEreaiekqkakeryeklhaegkTeeakaDLaRLalireqReeaaakreaekee 85 
                 NPN+++k+++q+++++ +e kk  ++  +lsRrEreai++q+a+eryek+haegkT++akaDLaRL+lire+R ++aa+++ae+ee
  KKY23238.1 122 NPNHTAKARSQAASTVPTEPKKVPDDLaNLSRREREAIQAQQARERYEKMHAEGKTDQAKADLARLKLIREKRDAEAARKKAEQEE 207
                 9*************97777788888889*******************************************************986 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.079
        PP28  30 sRrEreaiekqkakeryeklhae 52 
                  R Ere++++++ ++r  kl+a+
  KKY23238.1 207 ERLEREQANAREREAREAKLRAA 229
                 57799999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2170  (0.121033); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.50
# Mc/sec: 1469.96
//
Query:       KKY23419.1  [L=754]
Description: putative c6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-15   56.3   0.1    3.4e-15   55.8   0.1    1.2  1  Fungal_trans  Fungal specific transcription factor domain
    2.1e-07   30.9  11.5    2.1e-07   30.9  11.5    1.9  2  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.1   3.8e-19   3.4e-15       2     257 ..     233     492 ..     232     505 .. 0.75

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 3.8e-19
  Fungal_trans   2 drffsnfhpqfpilhk....psflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwil 94 
                   d++f++++ ++pil++     +f+ +t      + ++ + +ll ai+a+  +f++++  + ++ ++       ++  ++e      +     s+++l
    KKY23419.1 233 DLYFKHVNTWCPILDRkatfGTFFGST------SLPEPDRILLHAIVATTLRFCKDPRLKPETRKRY------HDASKHEVE---LYGLDHISVEAL 314
                   89**************95555555555......*************************997544444......444455544...58999999**** PP

  Fungal_trans  95 qsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkks...............lwklweeeaesrrRlwwaaFylDktialklGrppll 176
                   ++L++l+l  ++ s+ +  ++++ +  r   +l L  +++   +                  +++w+e  e rrRl w++++lD++  + +   ++l
    KKY23419.1 315 KALVILALDVLGASNGPRGWNLLALIARNIIHLDLCVESNVFLS-AvgtpatgslrrvalsQPTSWIE-DEGRRRLCWMVYILDRYATVATTFDFML 409
                   ***************99999987777776666666666655553.247777*****************.**************************** PP

  Fungal_trans 177 ddsqinlpLPcddddlwesddaseetlvetk....lsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlqseklswvee 257
                   +d+++n +LPc  d l + ++a e +  +      +++  + +++  +++  +++l  +++ +++++ +l+ + +  ++++w+++
    KKY23419.1 410 NDQEMNRALPCRYD-LFSKNEAVETRSFDWAdqtqPESTLNKPENLGSFSYHCEVLRILSRIHMFLREPLDVTAMT-DVQRWRTT 492
                   **************.7766666666655544778855555555555555555555555555555666666666666.44455443 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9  11.5   2.4e-11   2.1e-07       2      38 ..      43      78 ..      42      80 .. 0.92
   2 ?   -3.2   0.0       1.1   9.9e+03      28      38 ..     418     427 ..     415     428 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2.4e-11
                S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCC CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfysessk 38
                +C+ C+ +KvKCd+  PaC+ C+++n eC+ y+e++k
  KKY23419.1 43 SCELCKARKVKCDRAEPACTWCARHNRECV-YKERQK 78
                8*****************************.877765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.1
                 HHHCCCCTCCC CS
     Zn_clus  28 leCtfysessk 38 
                 l+C+ y+ +sk
  KKY23419.1 418 LPCR-YDLFSK 427
                 7899.998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 4953.89
//
Query:       KKY23420.1  [L=510]
Description: putative glycerol kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-71  239.5   1.5    5.9e-71  238.3   1.0    1.9  2  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom
    4.5e-65  219.6   0.0    5.9e-65  219.2   0.0    1.1  1  FGGY_N    FGGY family of carbohydrate kinases, N-terminal dom


Domain annotation for each model (and alignments):
>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.31   2.7e+03     138     157 ..      66      84 ..      55      84 .. 0.85
   2 !  238.3   1.0   6.6e-75   5.9e-71       1     197 [.     272     461 ..     272     462 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.31
      FGGY_C 138 ilealekdsgkpldrlavdG 157
                  +ea+e++ g+ ++++ ++G
  KKY23420.1  66 AVEAFENQ-GHSINSIKAVG 84 
                 57999999.*******9998 PP

  == domain 2  score: 238.3 bits;  conditional E-value: 6.6e-75
      FGGY_C   1 akvslGTssflll.vgtkpvisehglltpva.gedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvfvpafsg 97 
                 ak+++GT++fll+ vg+kpvisehgll++va ++ gk  yalegsiavags +++l+dn g+   i+ ++++ + la     e+v d+gg++fv+afsg
  KKY23420.1 272 AKNTYGTGCFLLYnVGEKPVISEHGLLSTVAfDFGGKVMYALEGSIAVAGSSIKFLVDNFGF---IEASSKI-SALA-----ETVDDNGGCTFVTAFSG 361
                 79*****************************9999***************************...******9.9999.....9**************** PP

      FGGY_C  98 lrapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilAav 196
                 l+apyw +dargti+g+++ t+ +h+arA+lea+++q++ail a+ekdsg++l++lavdGG+s++dl mq++ di+g+pV rp+++e+talGaAi+A++
  KKY23420.1 362 LFAPYWIDDARGTIFGITAFTKRGHVARATLEATCFQTKAILVAMEKDSGHKLTELAVDGGMSNSDLTMQTQSDIIGIPVLRPAMRETTALGAAIAAGL 460
                 **************************************************************************************************9 PP

      FGGY_C 197 a 197
                 a
  KKY23420.1 461 A 461
                 8 PP

>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.2   0.0   6.6e-69   5.9e-65       2     245 .]       9     263 ..       8     263 .. 0.95

  Alignments for each domain:
  == domain 1  score: 219.2 bits;  conditional E-value: 6.6e-69
                 EEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHC...T.-GCCEEEEEEEE-SS-EEEEETTT.EESSEEE CS
      FGGY_N   2 ilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqa...gisekqikaIgisgqreglvllDknd.kpLynai 96 
                 i ++D+Gtts+++++++++g+ vas+q+e+++++p++gw+e+dp ei +++ ++i  ++e+    g s + ika+gi++qre++v++D+ + +pLynai
  KKY23420.1   9 IGSIDQGTTSSRFLIFNHHGEPVASHQLEFTQIYPQPGWHEHDPLEIVESVEKCIDGAVEAFenqGHSINSIKAVGITNQRETTVVWDRVTgNPLYNAI 107
                 678****************************************************998887777799***********************99******* PP

                 -TT--TTHHHHHHHHHTTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHC....EEEEHHHHHHHHHCT.....--EEEHHHHCTTTSEETTTT CS
      FGGY_N  97 lwkdrrtaeiveklkeegnekklyektglvlstgftlsklkWlkenepevfekie....kflliddyLiwrLtg.....qfvtdvtnasesmlfnikkl 186
                 +w d+rt++ v+klk+ +++++l ++ g++lst+ ++ kl Wl+en+  v  + +    +f+++d +L ++L g     +fv+d +nas++m++n+++l
  KKY23420.1 108 VWTDTRTQALVRKLKQRLGATELLSRCGIPLSTYPSVGKLLWLLENVSAVKDAYDagnlAFGTVDAWLVYKLNGgpkrnVFVSDPSNASRTMFMNLETL 206
                 ***********************************************999999999999**************************************** PP

                 EE-HHHHHHTT--GG..GS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 187 ewdeellailgipee..lLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                 ++de+l++++ +++e  +LP++v+ss  + + +    a      g p+ g++gDq+aa++G
  KKY23420.1 207 QYDEQLIDFFRLDREkvHLPRIVHSSDATSYGTLASTALK----GFPITGCLGDQSAALVG 263
                 ***************99*********98776665555555....589************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.36s 00:00:01.02 Elapsed: 00:00:00.57
# Mc/sec: 2678.37
//
Query:       KKY23421.1  [L=296]
Description: putative aquaporin 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-51  174.8   1.3    2.8e-51  174.4   1.3    1.1  1  MIP       Major intrinsic protein
  ------ inclusion threshold ------
       0.36   11.1   0.1       0.36   11.1   0.1    2.5  3  DUF2644   Protein of unknown function (DUF2644)


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.4   1.3   3.1e-55   2.8e-51       7     206 ..      60     275 ..      54     286 .. 0.91

  Alignments for each domain:
  == domain 1  score: 174.4 bits;  conditional E-value: 3.1e-55
                 HHHHHHHHHHHHHHHHHHHHHHHHCCCSSCSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHHCHT-S-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHH CS
         MIP   7 flravlAEflatlllvfigvgsalnvkkkvsslaslvsvtleavalafglalavlvylaagiSGaHlNPavTlallvarkisllrailYivaQllGaiv 105
                   r+ ++Ef++ ++l+++g g++++v  ++ +     +++++++++++gl+++ +vy+  giSGaHlNPavTla++v+rk++ ++   Y++aQ+lGa++
  KKY23421.1  60 QFREPFSEFFGVFILILFGDGVVAQVVLSSGE-----KGDYQSISWGWGLGVMLGVYCS-GISGAHLNPAVTLANCVYRKFPWRKFFPYMIAQVLGAMA 152
                 478999***************76655555544.....4699****************96.7************************************** PP

                 HHHHHHHHCHHH................HHHTTTTSSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHCSTTSSSSTCHGHHHHHHHHHHHHHHHHHHHHS CS
         MIP 106 aaallklltkgl................esraglfanslkpglsagqalvvEiiltfvLvlvvfaltddkrkvslgelaplaigllvaliilvgipltG 188
                 aaa++++ +k++                + +ag f++++++ ++++ ++++E++   +L+++++al dd + +  g l+pla++++++ i +  +  tG
  KKY23421.1 153 AAAVVYGNYKSAidvyeggvgirtvsgdHATAGIFCTYPAEFMTKTGQFFSEFVASTILMFCIYALKDDGNIGA-GPLTPLALFFVIFGIGACFGWETG 250
                 ***************************9999****************************************999.************************ PP

                 T-SSHHHHHHHHHHHTH.......S CS
         MIP 189 aamNpArslgpavvlnk.......f 206
                  a+N+Ar++gp++v++        +
  KKY23421.1 251 YAINLARDFGPRLVSYMlgyghevW 275
                 **************99866654442 PP

>> DUF2644  Protein of unknown function (DUF2644)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.42   3.8e+03      40      52 ..      66      78 ..      63      83 .. 0.78
   2 ?   -2.4   0.1      0.65   5.8e+03      43      56 ..     139     153 ..     123     157 .. 0.48
   3 ?   11.1   0.1     4e-05      0.36      13      34 ..     196     217 ..     195     221 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.42
     DUF2644 40 eelfmtfaifcvG 52
                +e+f +f+++++G
  KKY23421.1 66 SEFFGVFILILFG 78
                6788889888887 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.65
     DUF2644  43 fmtfaifcv.Gavat 56 
                 f+ ++i+ v Ga a+
  KKY23421.1 139 FFPYMIAQVlGAMAA 153
                 333333333355554 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 4e-05
     DUF2644  13 TafiQFfgalllagiLvyavyl 34 
                 T + QFf+  +++ iL++++y 
  KKY23421.1 196 TKTGQFFSEFVASTILMFCIYA 217
                 5566****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1919.78
//
Query:       KKY23422.1  [L=800]
Description: putative glycerol-3-phosphate mitochondrial [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-52  179.8   0.0    1.4e-52  179.4   0.0    1.1  1  DAO            FAD dependent oxidoreductase
    2.3e-38  130.9   0.0    4.4e-38  130.0   0.0    1.5  1  DAO_C          C-terminal domain of alpha-glycerophosphate ox
    9.1e-09   34.9   0.6    7.1e-05   22.1   0.4    2.1  2  FAD_binding_2  FAD binding domain
      8e-05   22.2   0.0    0.00012   21.6   0.0    1.3  1  FAD_oxidored   FAD dependent oxidoreductase
    8.5e-05   22.7   0.1     0.0092   16.2   0.1    2.8  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00065   19.0   0.0      0.001   18.4   0.0    1.2  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.022   13.5   0.1      0.032   12.9   0.1    1.2  1  HI0933_like    HI0933-like protein
      0.029   13.5   0.4       0.14   11.2   0.3    1.9  2  GIDA           Glucose inhibited division protein A
      0.046   13.6   0.1        0.1   12.5   0.1    1.6  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
      0.091   12.0   0.0       0.19   10.9   0.0    1.5  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
       0.11   13.1   0.2       0.25   11.9   0.2    1.6  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.4   0.0   8.8e-56   1.4e-52       1     352 []     150     523 ..     150     523 .. 0.81

  Alignments for each domain:
  == domain 1  score: 179.4 bits;  conditional E-value: 8.8e-56
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH.....HHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESS CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeas.....elarlslealeelreleeelgididyrrtGllslaad 92 
                 d++iiGGG +G ++A+++a+rg  V+l+e++ +++sg+S+++++l+h+g+ryl++a       +++l++eal+e++ +  + ++++      ll+l+  
  KKY23422.1 150 DLLIIGGGATGTGIALDAATRGlrVALVERE-DFSSGTSSKSTKLVHGGVRYLEKAFwnldySQYQLVKEALKERKNFLFT-APHLSSSLAILLPLYKW 246
                 789****************************.8888******************98899999777**********999987.9*************864 PP

                 HHHHHH.H..HHHHHHH.HHTTTTE.EEEEHHHHHHHSTT..STTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEE.TCEEEEE CS
         DAO  93 eeelea.l..dkllall.leaglda.elldaeevrelepa..lpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeed.gkvwgve 183
                   e ++ +   k ++ll ++ gl++ ++l++++++e +p    ++l+gal+y+d gq ++ ++  +la +a+  G++++++ evtgle+++ gk+ g +
  KKY23422.1 247 W-EAPYfWagTKAYDLLaGSEGLESsYFLTKNRALEQFPLlkKDNLVGALVYYD-GQHNDSRMNVSLAMTAALYGATMVNHIEVTGLEKDEnGKLCGAR 343
                 3.24442211244444487789988458***99******96443999*******.999*****************************875564444444 PP

                 ..........EECTEEEE...EEEE..EEE--GGGHHHH.HTTCTT.TSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEE CS
         DAO 184 ..........rttpgend...aada..vVnaaGawsdll.gllkel.dlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlv 265
                           + ++   +   +++a  ++na+G+++d + +++++  +  + p  g ++vl p ++++     +l +p  + dgr+++++p++ g++++
  KKY23422.1 344 vrdmlperdgQGKS---SeqfIIRArgIINATGPFTDAIeQMDEPTrKDIVAPSSGVHIVL-PGHLSPKN--MGLLDP-ATSDGRVIFFLPWE-GSTIA 434
                 54777876543222...1344667777**********99778844423456**********.87885544..444445.8899*********6.99*** PP

                 EESSEEETTCSSTSCSHHHHHHHHHHHHHHS.GGG....CGEEEEEEEEEEE.TTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHHHH CS
         DAO 266 Ggtadeesgdddpevdeedidellealrklf.Pql....gdvlrkwaGlrpl.pdglpligetpgvkglylatGhsghGltlapatGkllael 352
                 G+t+ + + + +p ++eedi  +l++++k++ P++    +dvl +w+G+rpl +d +    e+  v+++++    s +Gl ++++ Gk+++++
  KKY23422.1 435 GTTDAPCGIERNPVASEEDIGFILKEVNKYItPEIditrDDVLAAWSGIRPLvRDPNSANTES-LVRNHLVT--VSKSGLLTCAG-GKWTTYR 523
                 ***97777667799*****************988445658899********646776666663.47777776..4779*******.***9986 PP

>> DAO_C  C-terminal domain of alpha-glycerophosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.0   0.0   2.7e-41   4.4e-38       1     126 []     569     695 ..     569     695 .. 0.95

  Alignments for each domain:
  == domain 1  score: 130.0 bits;  conditional E-value: 2.7e-41
                 --TTS---TT--.......TT-STTHT--HHHHHHHHHHHGGGHHHHHHHHHH.TH...HHHHHTTS-HHHHHHHHHHHHHS---SHHHHHHTTS-HHH CS
       DAO_C   1 crTkklpLvGaenwsknlaaelaqeygldeevaehLaerYGsraeevlelake.dekpelaerlspelpyieaevvYavrhEmartlvDvlaRRtrlaf 98 
                 c+T +++L+G++++sk+l+++l+q+++l+++ a+hLa +YG+ra+ev++l +e  +++++  rls ++p++  ev Y+vr+E+a+t++DvlaRRtrl+f
  KKY23422.1 569 CTTPSIRLLGSHGYSKTLYISLIQTFNLPADIAQHLALNYGDRAWEVASLISEvLSSSDHIPRLSRSHPFTPFEVLYSVRREYAQTATDVLARRTRLSF 667
                 99**********************************************87555145558999************************************* PP

                 H-HHHHHHHHHHHHHHHHHHTT--HHHH CS
       DAO_C  99 ldadaalealpevaelmaeelgWdearr 126
                 lda+aa +alp+++++m++el+W++ar+
  KKY23422.1 668 LDAQAAYNALPTIIDIMGKELHWTQARK 695
                 *************************986 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.4   4.4e-08   7.1e-05       1      41 [.     150     190 ..     150     202 .. 0.93
   2 !   11.0   0.0    0.0001      0.17     147     216 ..     311     387 ..     280     400 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 4.4e-08
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG- CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggataws 41 
                    D+++iG+G+ G   Al aa +Gl+va+ve e+  +g++  s
     KKY23422.1 150 DLLIIGGGATGTGIALDAATRGLRVALVEREDFSSGTSSKS 190
                    89******************************999988766 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0001
                    HHHHHHTCTEEEEESEEEEEEEE.CTTEEEEEEEEET........TTTCEEEEEESEEEE-----GG..........GS CS
  FAD_binding_2 147 lvesarkagvdfqerteadeLiv.edgrvtGavvenp........esgrevrirakavvlatgGfgrallkellgaaae 216
                    l+ +a  +g ++ +++e++ L   e+g+  Ga v+++        +s++++ ira++++ atg f    +++ ++++  
     KKY23422.1 311 LAMTAALYGATMVNHIEVTGLEKdENGKLCGARVRDMlperdgqgKSSEQFIIRARGIINATGPFTD-AIEQ-MDEPTR 387
                    455555678999999******995577********99****************************95.5544.333333 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   7.5e-08   0.00012       1      40 [.     150     189 ..     150     222 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 7.5e-08
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGllts 40 
                   D++++GGg+ G+  A+ Aa +G +v+Lve++++  G++++
    KKY23422.1 150 DLLIIGGGATGTGIALDAATRGLRVALVEREDFSSGTSSK 189
                   99******************************98888776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   5.6e-06    0.0092       1      62 [.     153     217 ..     153     222 .. 0.77
   2 ?    3.2   0.0     0.065   1.1e+02      31      54 ..     515     539 ..     511     545 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5.6e-06
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE...TTCEECTS---EEETTHHHHCH CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev...pgvrvdygahifhgsgyypnvr 62 
                    I+G+G++G  +A  +a +g++v l+e+ d  +G ++  +    +gvr+   a +  + ++y+ v+
     KKY23422.1 153 IIGGGATGTGIALDAATRGLRVALVEREDFSSGTSSKSTKlvhGGVRYLEKAFWNLDYSQYQLVK 217
                    9*****************************99999877655656677655555555555555555 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.065
                    SSGGG-EECE.TTCEECTS---EEE CS
  NAD_binding_8  31 lGGraasyev.pgvrvdygahifhg 54 
                     GG++++y+   + +vd+ +++f+ 
     KKY23422.1 515 AGGKWTTYRQmAEDAVDLAMSTFNL 539
                    7*******997889*********75 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.2e-07     0.001       1      48 [.     149     195 ..     149     229 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.2e-07
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallg 48 
                  +d+++iGgG+ G+  al++a+ g++v+lv +++ +  g+ + s++l++
   KKY23422.1 149 YDLLIIGGGATGTGIALDAATRGLRVALV-EREDFSSGTSSKSTKLVH 195
                  6899*************************.666677776666665554 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     2e-05     0.032       2      32 ..     150     180 ..     149     185 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2e-05
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVllleka 32 
                  d+++iGgGa G   A+ aa+rg rV+l+e++
   KKY23422.1 150 DLLIIGGGATGTGIALDAATRGLRVALVERE 180
                  789*************************986 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   8.5e-05      0.14       1      29 [.     150     178 ..     150     198 .. 0.84
   2 ?   -0.6   0.0      0.32   5.2e+02     107     156 ..     333     380 ..     317     389 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.5e-05
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEE CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLit 29 
                 d+ +iGgG  G+  Al aa +G++v+L+ 
  KKY23422.1 150 DLLIIGGGATGTGIALDAATRGLRVALVE 178
                 5789***********************93 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.32
                 TSTTEEEEES-EEEEEECTTEEEE.EEETTS-EEEECEEEE--TT-BT-EE CS
        GIDA 107 nepnleiieeeveeliveekkvkg.vvtedgetikakavviatGtflkgki 156
                 + +n +++ ++v ++++e     g  + +++ +i+a+ ++ atG+f ++  
  KKY23422.1 333 KDENGKLCGARVRDMLPE---RDGqGKSSEQFIIRARGIINATGPFTDAIE 380
                 555666666666666662...2221245566789999********998765 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   6.3e-05       0.1       4      32 ..     153     181 ..     150     205 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.3e-05
                 EE--SCCHHHHHHHHHHTT-EEEEE-S-H CS
     3HCDH_N   4 viGaGtmGagiaavfasagleVvlvdise 32 
                 +iG G  G+gia  +a +gl+V lv++++
  KKY23422.1 153 IIGGGATGTGIALDAATRGLRVALVERED 181
                 8************************9865 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.19     168     197 ..     152     181 ..     122     217 .. 0.69
   2 ?   -4.2   0.0       4.6   7.5e+03     122     136 ..     362     376 ..     357     378 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
  Pyr_redox_3 168 vViGgknSavDaAlelvrkgaeVtvvtrgs 197
                  ++iGg+ ++  +Al+ + +g +V +v r++
   KKY23422.1 152 LIIGGGATGTGIALDAATRGLRVALVERED 181
                  555555555555555555555555555554 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 4.6
  Pyr_redox_3 122 tyeAkkviiAtGefd 136
                   ++A+ +i AtG f 
   KKY23422.1 362 IIRARGIINATGPFT 376
                  5899********996 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   0.00015      0.25       2      32 ..     151     181 ..     150     187 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversd 32 
                 ++++GgG +g   A  +a  g +V +ver+d
  KKY23422.1 151 LLIIGGGATGTGIALDAATRGLRVALVERED 181
                 69***************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (800 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 5690.98
//
Query:       KKY23423.1  [L=413]
Description: putative acetate kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-95  318.8   0.0      5e-95  318.5   0.0    1.0  1  Acetate_kinase  Acetokinase family
  ------ inclusion threshold ------
       0.11   12.0   0.0       0.19   11.2   0.0    1.3  1  DUF1281         Protein of unknown function (DUF1281)


Domain annotation for each model (and alignments):
>> Acetate_kinase  Acetokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.5   0.0   5.6e-99     5e-95       2     386 ..       6     403 ..       5     406 .. 0.89

  Alignments for each domain:
  == domain 1  score: 318.5 bits;  conditional E-value: 5.6e-99
  Acetate_kinase   2 vLviNaGSsSlKfqlleae....akeevllkglveeilleeaellkklegekkeaektaiadheealklilntlkeekvik...dlkeiaaighR 89 
                     +L iNaGSsSlK++l+ ++    +++   +++ v  ++ + a+l+ + +g k e+ + ++++h+ea ++il+ +++++  k   +++e++   hR
      KKY23423.1   6 ILSINAGSSSLKITLFKPSlddpTIPVRIASANVTGLTAPPAQLKYTRAGSKPENGEAHVSSHDEAFEHILELFEKDEELKdfsSKDEVEYTCHR 100
                     789*************998777677777888888888888888888879999999999*****************96555411156799999*** PP

  Acetate_kinase  90 vvhggekftesvlitdevvekikdlielaplhNpanlegieaakkllpevknvavfDtafhqtlpeeaylyalpeelyeehgiRrygfHgtshky 184
                     vvhgg +f++ vlit++++++++ + elaplhN a +  i+++ + lp+vknv  fD afh tlp + + ya+ ++++++ g+R+ygfHgts+ y
      KKY23423.1 101 VVHGG-DFGKDVLITPDTLHRLEAVEELAPLHNGAAIAIIKTCVAQLPHVKNVGCFDSAFHATLPLATRTYAIDQDIATKKGLRKYGFHGTSYSY 194
                     ****9.59999************************************************************************************ PP

  Acetate_kinase 185 vskraakilgkpledlnlivcHlGnGaSvaavknGksvdtsmgltpLeGlvmgtRsGdidpailvylaet....eglsadev.....entlnkks 270
                     + + + k+l+k  ++  li  HlG GaS++a+knGksvdt+mgltp+ Gl  gtRsGdidp+++++ ++        s+ e+     e++lnk+s
      KKY23423.1 195 ILRVTSKYLNKSPDQTSLIALHLGSGASMCAIKNGKSVDTTMGLTPVSGLPGGTRSGDIDPSLIFHYTSDvaslSRESTRELhittaEDILNKQS 289
                     ****************************************************************98654311112333333322222789***** PP

  Acetate_kinase 271 GllglsglssDlrevedaaeegdeeaelalkvyvhrlakyigeyaavlegkvDaivFTgGigenaalvrelvlkalevlglevdkeknknrsGed 365
                     G ++l g ++ + e+ +        a+lal+++v r+  y g+y +++ gkvDa+vF gGige + l r++v++a+ +lgl+vd++knk ++ ++
      KKY23423.1 290 GWKALAG-TTNFAEIAKPD--ASAGAKLALDIFVDRILGYFGSYFVKVGGKVDAVVFAGGIGEKSDLLRKRVIDAVGFLGLAVDEDKNK-KPADE 380
                     *******.77898887654..55579**************************************************************7.66666 PP

  Acetate_kinase 366 el..isteqskvkvivvptnEel 386
                     ++  is + s  k +vv+t+Ee+
      KKY23423.1 381 TVadISGNSSGPKTLVVQTDEEV 403
                     665589999999*********97 PP

>> DUF1281  Protein of unknown function (DUF1281)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.1e-05      0.19      17      69 ..      37      89 ..      31      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.1e-05
     DUF1281 17 AGcaGiLkPvktlsyapypaLvsaGtgesspenlAFeqWlelLkedveLteea 69
                A ++G+  P   l+y+   +  ++G +++s+++ AFe+ lel ++d eL++  
  KKY23423.1 37 ANVTGLTAPPAQLKYTRAGSKPENGEAHVSSHDEAFEHILELFEKDEELKDFS 89
                78999999****************************************99755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2790.21
//
Query:       KKY23424.1  [L=815]
Description: putative d-xylulose 5-phosphate d-fructose 6-phosphate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.9e-153  510.0   0.0   3.9e-153  509.6   0.0    1.2  1  XFP_N         XFP N-terminal domain
    5.7e-76  254.5   0.0      1e-75  253.7   0.0    1.4  1  XFP_C         XFP C-terminal domain
    5.4e-75  251.0   0.0      8e-75  250.4   0.0    1.3  1  XFP           D-xylulose 5-phosphate/D-fructose 6-phosphate p
  ------ inclusion threshold ------
      0.031   14.0   0.2      0.085   12.6   0.2    1.7  1  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b


Domain annotation for each model (and alignments):
>> XFP_N  XFP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  509.6   0.0  8.7e-157  3.9e-153       3     362 ..      35     393 ..      33     395 .. 0.97

  Alignments for each domain:
  == domain 1  score: 509.6 bits;  conditional E-value: 8.7e-157
       XFP_N   3 seeelkkldkywraanylavgliylkdnpllreplkeedvkarllGhwGtvpGlsflyahlnriikkydqnmlyvvGPGhGgpalvaasylegsysely 101
                 +e++ k l ky raany+a+++i+l dn l++ +l+ +d+k rllGhwGt+pGl+++y+hln +ikkyd++m+yvvGPGhG+p+++a++++egs++++y
  KKY23424.1  35 DENDNKALAKYRRAANYIAAAMIFLGDNTLVKRDLTFDDIKPRLLGHWGTCPGLTLVYSHLNVLIKKYDLDMVYVVGPGHGAPSILANLWMEGSLGKYY 133
                 56777899******************************************************************************************* PP

       XFP_N 102 peiskdeeGlkklfkqfsfPGGipshvaaetPGsiheGGelGyalshayGavldnPdlivacvvGdGeaetGPlatswhsnkflnPaedGavlPileln 200
                 pe++++  Gl++l+  fs  GG+psh++aetPG+iheGGelGyals+++Ga++dnPdliv+cvvGdGeaetGP+at+wh  k+++Pae+GavlPi+++n
  KKY23424.1 134 PEYARNTTGLHNLISGFSTAGGLPSHINAETPGAIHEGGELGYALSVSFGAIMDNPDLIVTCVVGDGEAETGPTATAWHGYKYIDPAESGAVLPIIHVN 232
                 *************************************************************************************************** PP

       XFP_N 201 GykisnptilarisdeelkklfeGlGyepafvededteslhkllaevldkaveeihdiqkearsneeasrPkwPmiilrtPkGwtgPkyvdGkkvegsf 299
                 G+kis++ti+++++d e+ +lf+G+Gy+p++v+d   ++++  l++ +++a+ ei +iqk+ars +   +P+wP++i+rtPkGw+gPk v  ++vegsf
  KKY23424.1 233 GFKISERTIYGCMDDREMAALFTGYGYQPRVVDD--LNDIDADLSNSMEWALGEIRKIQKAARSGNPILKPRWPVLIMRTPKGWSGPKIVHNEFVEGSF 329
                 *******************************987..8889999******************************************************** PP

       XFP_N 300 rahqvPlalarentaklellkewlksykpeelfdedgslkeelkelaPkg.ekrlaanpeangg 362
                 rahqvPla+a++++++l+ l++wlksy+peelf edg +++++k+l+P++ +k+l++ ++ n  
  KKY23424.1 330 RAHQVPLAAAKKDPGELKDLQSWLKSYQPEELFTEDGDVVDDIKALIPDRdDKKLGQSKVVNQE 393
                 ************************************************8736899999988865 PP

>> XFP_C  XFP C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.7   0.0   2.3e-79     1e-75       1     199 [.     599     801 ..     599     803 .. 0.98

  Alignments for each domain:
  == domain 1  score: 253.7 bits;  conditional E-value: 2.3e-79
       XFP_C   1 KqpepqylsldeAeehckkGasiwewastdegeepdvvlagiGdeptlEvlaAvellreelpelkvrvvnvvdLmklqeesehphglsdeefdelFtkd 99 
                 Kqp++ yls+deAe hc++G siw++astdeg +pdvvl+giG e t+Ev+aA+ell++ +pel++rv+nv+dLm+l  +s+hph+l+d++fd+lFt+ 
  KKY23424.1 599 KQPSAAYLSADEAEDHCRAGGSIWKFASTDEGLNPDVVLVGIGAELTFEVIAAAELLKKLAPELRLRVINVTDLMILGYQSSHPHSLTDQAFDALFTEH 697
                 9************************************************************************************************** PP

       XFP_C 100 kpvifnfHgYptlikrLlykrknherlhvrgYkeeGtttTpfdmlvlnevdRfhlaidai....krveklkkkaaelaeklkekleehkkyireegeDl 194
                 kp++fn+HgY++++++Ll++r+n +r+ +++YkeeGtttTpfdm+++ne++Rf++a++ai     ++ek+k +++el++ l+++++e+kk i ++++D+
  KKY23424.1 698 KPIHFNYHGYANELRGLLFGRPNMHRVGITSYKEEGTTTTPFDMMLVNETSRFDIAKKAIlggsLTNEKVKVRLQELVSFLDHQMKEVKKEILATKKDP 796
                 ************************************************************9998788999****************************9 PP

       XFP_C 195 peved 199
                   +ed
  KKY23424.1 797 AFLED 801
                 87665 PP

>> XFP  D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.4   0.0   1.8e-78     8e-75       3     176 .]     419     588 ..     417     588 .. 0.97

  Alignments for each domain:
  == domain 1  score: 250.4 bits;  conditional E-value: 1.8e-78
         XFP   3 lgkylrdvlkknpenfrifgPDetaSnrLnavfevtkrqwqeeieeedeelaa.eGrvievlsEhlcegllegYlltGrhglfasyEaflrivdsmvnq 100
                 +g +l++v+++np++frif+PDe +Sn+L+ v++ t r++q+     de ++a  Gr+ievlsEh+c+g+++gY+ltGr++lf+syEafl iv++m++q
  KKY23424.1 419 VGLLLKKVVEDNPKSFRIFSPDEFMSNKLDPVLDITGRNFQW-----DEFSNArGGRLIEVLSEHQCQGFMQGYTLTGRTALFPSYEAFLGIVHTMMVQ 512
                 78899*************************************.....66666559******************************************** PP

         XFP 101 hakflkkakelewrkdvaslnllltstvwrqdhNgfsHqdpglidavlnkkaevvrvylPpDaNtllsvldhclrs 176
                 +akf k+ak+l+wr dvas+n+l+tst++rq+hNgfsHq+p++i+av+n k++ +rvylPpDaNt++s+++hcl+s
  KKY23424.1 513 YAKFGKMAKQLSWRGDVASINYLETSTWTRQEHNGFSHQNPSFIGAVMNLKPDAARVYLPPDANTFISTMAHCLQS 588
                 **************************************************************************97 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   1.9e-05     0.085      28      57 ..     172     201 ..     154     208 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.9e-05
                   S-TTTHHHHHHHHHHHSTTSEEEEEEEHHH CS
  TPP_enzyme_C  28 gtmGyglpaAiGaklakpdrevvaivGDGg 57 
                   g +Gy+l+++ Ga + +pd  v ++vGDG 
    KKY23424.1 172 GELGYALSVSFGAIMDNPDLIVTCVVGDGE 201
                   789**************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.53
# Mc/sec: 4642.69
//
Query:       KKY23425.1  [L=360]
Description: putative c6 zinc finger domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2303.12
//
Query:       KKY23426.1  [L=201]
Description: putative gtp cyclohydrolase i [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-26   93.4   0.0    1.7e-26   92.7   0.0    1.3  1  GTP_cyclohydroI  GTP cyclohydrolase I


Domain annotation for each model (and alignments):
>> GTP_cyclohydroI  GTP cyclohydrolase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   0.0   9.5e-31   1.7e-26       3      82 ..     115     194 ..     113     196 .. 0.96

  Alignments for each domain:
  == domain 1  score: 92.7 bits;  conditional E-value: 9.5e-31
                      HHHHHHHHHTT--TTSTTTTTHHHHHHHHHHHHTGGGGS-G.GGGGSSEEETT--S-EEEEEEEEEEEETTT--EEEEEE CS
  GTP_cyclohydroI   3 eavreiLealgedpereglketpkRvakayeelfkgleedpkekvlkkvfeeekdemvlvkdiefsSlCeHHllpfigka 82 
                       av++i+e +gedpereglketp R+aka+  ++kg+ee+ ++ v  +vf+e++de+v+vkdie++SlCeHH++pf+gk+
       KKY23426.1 115 GAVQTIFECIGEDPEREGLKETPMRYAKALMYFTKGYEENVRDLVNGAVFHEDHDELVIVKDIEVFSLCEHHMVPFMGKV 194
                      689**************************************98899********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 1314.15
//
Query:       KKY23427.1  [L=956]
Description: hypothetical protein UCRPC4_g02942 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (956 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 6011.24
//
Query:       KKY23428.1  [L=537]
Description: hypothetical protein UCRPC4_g02943 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-20   72.7  16.3    5.6e-10   39.1   4.4    2.7  2  WW        WW domain


Domain annotation for each model (and alignments):
>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   4.4   3.1e-14   5.6e-10       1      31 []     394     423 ..     394     423 .. 0.99
   2 !   38.8   4.1   3.9e-14     7e-10       1      31 []     457     486 ..     457     486 .. 0.99

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 3.1e-14
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 LP+GWe   +p  G +YY++h+T++t+W++P
  KKY23428.1 394 LPAGWEISHTPA-GYPYYVDHTTRTTTWTDP 423
                 8***********.*****************9 PP

  == domain 2  score: 38.8 bits;  conditional E-value: 3.9e-14
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 LPpGWe  ++p  G +YY++h+T+ t+W++P
  KKY23428.1 457 LPPGWEVKYTPA-GYPYYVDHNTRMTTWVDP 486
                 8***********.****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1104  (0.0615762); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3736.97
//
Query:       KKY23429.1  [L=295]
Description: putative protein phosphatase inhibitor 2 (ipp-2) [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-21   76.2  16.2    2.8e-20   73.4  16.2    2.1  1  IPP-2     Protein phosphatase inhibitor 2 (IPP-2)
  ------ inclusion threshold ------
       0.07   12.9   0.1        4.6    7.1   0.0    2.4  2  DUF3410   Domain of unknown function (DUF3410)


Domain annotation for each model (and alignments):
>> IPP-2  Protein phosphatase inhibitor 2 (IPP-2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4  16.2   3.2e-24   2.8e-20       1     130 [.      99     276 ..      99     278 .. 0.64

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 3.2e-24
       IPP-2   1 vkWDEmnilatnhpadkdygtmkIdEPkTPYhrmvdedddede..........................asdeeekea..eldaeslaekleaaaesse 71 
                 +kWDEmn l+ ++  ++++ tmkI+EPkTPY++++d+++d++e                          +++ ++  +  +++  +l+e++ea+   + 
  KKY23429.1  99 LKWDEMN-LYLAE--QNRTATMKITEPKTPYAKQYDPTEDDTEmvdedpsiqvdsivvdekekvdslrkNRSGHA--ResDIPGLELGEPEEAVDLDTG 192
                 59*****.56666..44569***************9999555555555667777777666677777643222222..2357777777775533332222 PP

       IPP-2  72 kkssseeee.....................eaeseeeeeedlseeeeeekrreFeekRKaHYnefkavk........llkeeleeeed 130
                  +  +                           e++ +e   + ++e+ +k+++Fee+RK+HY+ +k+vk        l++e+++eeed
  KKY23429.1 193 AEDDR---IirtsshdggrsrsdsaekhvsVGEDDAAEAVGMPSKEDLAKHKKFEEMRKKHYE-MKNVKgllghpedLIAEDEDEEED 276
                 22222...02222234455555545555553334446777788889999*************9.*****9888777666666665555 PP

>> DUF3410  Domain of unknown function (DUF3410)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0    0.0078        70      28      54 ..     129     165 ..     116     173 .. 0.77
   2 ?    7.1   0.0   0.00051       4.6      39      57 ..     234     252 ..     219     259 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0078
                 H--CHHHHHHHHH...CTT.......CCCHHHHHHHT CS
     DUF3410  28 vYDvrrDdalfRr...ele.......kakgFdalRkn 54 
                  YD+ +Dd+++     +++       ++++ d+lRkn
  KKY23429.1 129 QYDPTEDDTEMVDedpSIQvdsivvdEKEKVDSLRKN 165
                 6********9977556222445555588888888887 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00051
                 HHCTTCCCHHHHHHHT--- CS
     DUF3410  39 RrelekakgFdalRknYpe 57 
                 ++ l+k+k+F+++Rk++ e
  KKY23429.1 234 KEDLAKHKKFEEMRKKHYE 252
                 567789*********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1885.01
//
Query:       KKY23430.1  [L=572]
Description: hypothetical protein UCRPC4_g02878 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0046   17.1   0.0      0.013   15.7   0.0    1.7  1  Myb_DNA-binding  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   7.3e-07     0.013       3      41 ..     110     149 ..     110     153 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 7.3e-07
                      SSBHHHHHHHHHHHHHHT.TCHHHHHHHHTSS-HHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhG.nrWkkIaerlggRtekqcrsr 41 
                      +Wt eE el+ +a+ + G  + k+I++ +g++t  +++ +
       KKY23430.1 110 RWTSEEKELFFQALSRKGrHDVKAISDSIGSKTVIEVIAY 149
                      6********************************9888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.52
# Mc/sec: 3333.72
//
Query:       KKY23431.1  [L=281]
Description: putative vegetative incompatibility protein het-e-1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-26   91.5   1.8    7.8e-13   48.8   0.1    2.8  3  Ank_2     Ankyrin repeats (3 copies)
    5.8e-16   57.0   0.9      0.016   15.7   0.0    5.2  5  Ank_3     Ankyrin repeat
    3.6e-14   52.9   0.2      4e-08   33.6   0.2    4.2  4  Ank_4     Ankyrin repeats (many copies)
    7.1e-14   51.7   6.1    0.00081   19.6   0.0    5.6  6  Ank_5     Ankyrin repeats (many copies)
    4.1e-13   49.1   5.2     0.0011   19.3   0.0    5.3  5  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.2e-08   4.4e-05      30      76 ..      86     140 ..      51     147 .. 0.80
   2 !   30.8   0.0     9e-11   3.2e-07       3      77 ..      88     174 ..      86     181 .. 0.81
   3 !   48.8   0.1   2.2e-16   7.8e-13       1      79 [.     154     259 ..     154     262 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.2e-08
       Ank_2  30 LhyAakngnleivklLleh......ad..ndgrtpLhyAarsghleivklLlekg 76 
                 L +A+++g+  +v++L+ +      a+   +g+t Lh+A+r  h  i++ Lle +
  KKY23431.1  86 LTTAIQEGSPRFVEYLVRYealvnyANeaANGETMLHMAVRVRHDTILNTLLEAK 140
                 789**************97778556447888*************9*******753 PP

  == domain 2  score: 30.8 bits;  conditional E-value: 9e-11
       Ank_2   3 lAakngnlelvklLl.egadpn..k...ngktaLhyAakngnleivklLleh...ad...ndgrtpLhyAarsghleivklLlekga 77 
                  A+++g++ +v++L+ ++a +n  +   ng+t Lh A++  +  i+ +Lle+   +d   ++g tpL++ a  g++ ++  Ll+ g+
  KKY23431.1  88 TAIQEGSPRFVEYLVrYEALVNyaNeaaNGETMLHMAVRVRHDTILNTLLEAkprLDvfsRQGITPLMLTAIDGYPSAICKLLDAGC 174
                 578889999******9776666652468***********9998999****977885566699******99999*9887777887775 PP

  == domain 3  score: 48.8 bits;  conditional E-value: 2.2e-16
       Ank_2   1 LhlAakngnlelvklLl.eg.................adpnk......ngktaLhyAakngnleivklLleh...ad...ndgrtpLhyAarsghleiv 69 
                 L+l a +g++++++ Ll +g                     +      +g+ta+ +Aa+ng+ ++++ Ll+    ++     g tpL++Aa +gh+ +v
  KKY23431.1 154 LMLTAIDGYPSAICKLLdAGcaldlclrptrqspqgtI---DldnditDGRTAVLLAAQNGHSDALQVLLKRggsVNamtTRGFTPLIAAAMHGHTACV 249
                 78889998887666666688344444444443333332...0334578**********************967774444578***************** PP

       Ank_2  70 klLlekgadi 79 
                 +lLl + +++
  KKY23431.1 250 ELLLRYRVNV 259
                 ****664444 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.25     9e+02       8      29 ..      88     108 ..      86     109 .. 0.79
   2 !   14.6   0.0     1e-05     0.036       1      23 [.     116     138 ..     116     145 .. 0.89
   3 !    5.8   0.0    0.0076        27       2      29 ..     150     176 ..     149     178 .. 0.88
   4 !   15.7   0.0   4.5e-06     0.016       1      31 []     199     228 ..     199     228 .. 0.95
   5 !   13.8   0.0   1.8e-05     0.064       2      30 ..     233     260 ..     232     261 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.25
       Ank_3   8 lAarsgnleivkfLlenkgadv 29 
                 +A+  g++  v++L++ + a v
  KKY23431.1  88 TAIQEGSPRFVEYLVR-YEALV 108
                 6888999999*****9.77655 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1e-05
       Ank_3   1 nGetpLhlAarsgnleivkfLle 23 
                 nGet+Lh+A+r  + +i+  Lle
  KKY23431.1 116 NGETMLHMAVRVRHDTILNTLLE 138
                 7*********************9 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0076
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G tpL+l a  g ++ ++ Ll+  g+ +
  KKY23431.1 150 GITPLMLTAIDGYPSAICKLLD-AGCAL 176
                 89************99999999.78876 PP

  == domain 4  score: 15.7 bits;  conditional E-value: 4.5e-06
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvna 31 
                 +G+t+  lAa +g+ + ++ Ll+ +g  vna
  KKY23431.1 199 DGRTAVLLAAQNGHSDALQVLLK-RGGSVNA 228
                 69*********************.9*99996 PP

  == domain 5  score: 13.8 bits;  conditional E-value: 1.8e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G tpL  Aa++g+++ v++Ll+ + ++v 
  KKY23431.1 233 GFTPLIAAAMHGHTACVELLLR-YRVNVE 260
                 89************99******.999885 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0016       5.6       7      44 ..      88     126 ..      86     129 .. 0.83
   2 !    5.2   0.0    0.0094        34      17      43 ..     133     158 ..     127     170 .. 0.78
   3 !   14.3   0.0   1.3e-05     0.047      34      55 .]     199     220 ..     188     220 .. 0.90
   4 !   33.6   0.2   1.1e-11     4e-08       2      55 .]     201     253 ..     200     253 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0016
       Ank_4   7 yaaisgrlelvrlLlekgadinaqdn..rsGetalhiAak 44 
                  a+++g  + v++L+ + a +n+  n  ++Get lh+A++
  KKY23431.1  88 TAIQEGSPRFVEYLVRYEALVNYA-NeaANGETMLHMAVR 126
                 688899999999999778888897.86788********95 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0094
       Ank_4  17 vrlLlekgadinaqdnrsGetalhiAa 43 
                 +  Lle ++ ++   +r+G t+l   a
  KKY23431.1 133 LNTLLEAKPRLDVF-SRQGITPLMLTA 158
                 789***********.*******98755 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 1.3e-05
       Ank_4  34 sGetalhiAakrgnveilklLl 55 
                 +G+ta+  Aa++g+ ++l+ Ll
  KKY23431.1 199 DGRTAVLLAAQNGHSDALQVLL 220
                 7*******************98 PP

  == domain 4  score: 33.6 bits;  conditional E-value: 1.1e-11
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +ta   aa+ g+ ++++ Ll +g ++na    +G+t+l+ Aa++g+  +++lLl
  KKY23431.1 201 RTAVLLAAQNGHSDALQVLLKRGGSVNAM-TTRGFTPLIAAAMHGHTACVELLL 253
                 789999***********************.777********************8 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.1   3.9e+03      36      55 ..      51      73 ..      41      73 .. 0.75
   2 ?    3.4   0.0     0.028     1e+02      22      46 ..      88     112 ..      86     116 .. 0.85
   3 !   12.0   0.0   5.6e-05       0.2      15      43 ..     116     146 ..     112     150 .. 0.86
   4 !   11.6   0.0   7.5e-05      0.27       1      44 [.     136     178 ..     136     179 .. 0.86
   5 !   19.6   0.0   2.3e-07   0.00081       7      53 ..     193     237 ..     189     238 .. 0.89
   6 !   19.3   0.1   2.9e-07     0.001       1      41 [.     219     258 ..     219     261 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.1
       Ank_5 36 l..argadlnltdsrG.ltaldl 55
                +   +g+ +n t +r  +t  d+
  KKY23431.1 51 MplIYGEGPNNTMNRLiETIRDY 73
                35578999999999988887776 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.028
       Ank_5  22 vAakygaadvvrlLlargadlnltd 46 
                 +A+  g+++ v++L+ ++a  n  +
  KKY23431.1  88 TAIQEGSPRFVEYLVRYEALVNYAN 112
                 7999***********9999888665 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 5.6e-05
       Ank_5  15 ggntpLhvAakygaadvvrlLl..argadln 43 
                 +g+t Lh+A++ ++ ++++ Ll  ++++d +
  KKY23431.1 116 NGETMLHMAVRVRHDTILNTLLeaKPRLDVF 146
                 477*******************988887765 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 7.5e-05
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnl 44 
                 Lle+   +++   + g tpL++ a  g+++ +++Ll+ g++l+l
  KKY23431.1 136 LLEAK-PRLDVFSRQGITPLMLTAIDGYPSAICKLLDAGCALDL 178
                 67777.66777777788*******************99999887 PP

  == domain 5  score: 19.6 bits;  conditional E-value: 2.3e-07
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                  d++ +dg+  t+  +Aa +g++d +++Ll+rg + n+ + rG t+l
  KKY23431.1 193 LDNDITDGR--TAVLLAAQNGHSDALQVLLKRGGSVNAMTTRGFTPL 237
                 466677766..9999*******************************8 PP

  == domain 6  score: 19.3 bits;  conditional E-value: 2.9e-07
       Ank_5   1 Llehg.padvnrldgggntpLhvAakygaadvvrlLlargad 41 
                 Ll++g +++  +++  g+tpL+ Aa +g+  +v+lLl ++++
  KKY23431.1 219 LLKRGgSVNAMTTR--GFTPLIAAAMHGHTACVELLLRYRVN 258
                 89999666666665..66*******************99887 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0       0.1   3.7e+02       9      28 ..      89     109 ..      49     113 .. 0.77
   2 ?    4.0   0.0     0.021        76       1      18 [.     116     133 ..     116     143 .. 0.71
   3 !    8.6   0.1   0.00077       2.8       2      24 ..     150     173 ..     149     181 .. 0.69
   4 !   13.5   0.1   2.1e-05     0.075       1      31 [.     199     230 ..     199     231 .. 0.91
   5 !   19.3   0.0   3.1e-07    0.0011       2      28 ..     233     260 ..     232     262 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.1
                 HHHHTTHHHHHHHH.TTTSTT CS
         Ank   9 AatngkkriiklLL.hGAnln 28 
                 A+++g++r +++L+ + A +n
  KKY23431.1  89 AIQEGSPRFVEYLVrYEALVN 109
                 789999*******95446445 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.021
                 TSBBHHHHHHHHTTHHHH CS
         Ank   1 dGnTPLHlAatngkkrii 18 
                 +G T LH+A++  +  i+
  KKY23431.1 116 NGETMLHMAVRVRHDTIL 133
                 79*******955443444 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00077
                 SBBHHHHHHHHTT..HHHHHHHH.TT CS
         Ank   2 GnTPLHlAatngk..kriiklLL.hG 24 
                 G TPL+l a +++    i+k LL  G
  KKY23431.1 150 GITPLMLTA-IDGypSAICK-LLdAG 173
                 99****988.5555666888.66446 PP

  == domain 4  score: 13.5 bits;  conditional E-value: 2.1e-05
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 dG+T+  lAa+ng+ + ++ LL +G ++na +
  KKY23431.1 199 DGRTAVLLAAQNGHSDALQVLLkRGGSVNAMT 230
                 8*********************87779*9965 PP

  == domain 5  score: 19.3 bits;  conditional E-value: 3.1e-07
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnln 28 
                 G+TPL  Aa+ g++ +++lLL ++ n+ 
  KKY23431.1 233 GFTPLIAAAMHGHTACVELLLrYRVNVE 260
                 9********************7788875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1887.30
//
Query:       KKY23432.1  [L=580]
Description: putative hst3 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-30  106.2   0.0      6e-09   36.1   0.0    3.2  3  SIR2            Sir2 family
  ------ inclusion threshold ------
       0.18   12.1   0.0       0.54   10.6   0.0    1.8  1  RNA_pol_Rpb2_4  RNA polymerase Rpb2, domain 4


Domain annotation for each model (and alignments):
>> SIR2  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   7.8e-12     7e-08       1      53 [.       4      57 ..       4      70 .. 0.75
   2 !   33.8   0.0   3.4e-12     3e-08      38      97 ..      92     155 ..      76     166 .. 0.74
   3 !   36.1   0.0   6.7e-13     6e-09      84     176 ..     177     290 ..     174     291 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 7.8e-12
                -GGGGGGGT---SSSTTSHHHHSCHHHHSSHHHHHHHHHHHHH.HHHHHHHHHH CS
        SIR2  1 GAGiStesGipdfRskeGlyaklakeelaspealfskkllvee.vfyniarell 53
                GAGiSt++GipdfRsk+Gly+ ++k + +++    + ++  ++ +f++i  + +
  KKY23432.1  4 GAGISTSLGIPDFRSKDGLYSLIHKCRASNTPSDDESPVSPKKrKFSDIDSNSM 57
                9********************999888666555555555544446777666655 PP

  == domain 2  score: 33.8 bits;  conditional E-value: 3.4e-12
                 HHHHHH..HHHHHHHHHHCC.TSS--HHHHHHHHHHHTTCEEEEEES-SSSHHHHTT-S.SEEE CS
        SIR2  38 kllvee..vfyniarellae.eaepnaaHkalkklekkgkllrliTQNiDgLekkaGsk.kvve 97 
                 ++ +++  +f+ + r+++++  ++ +++Hk+++ l + g+l+r++TQNiDgLe++ G++  +  
  KKY23432.1  92 PESTSTfyTFIASLRKQIHQeVKQTSQTHKFIRVLRDGGRLMRCYTQNIDGLESREGLSsDLSR 155
                 333444235666666666664678999*****************************98755555 PP

  == domain 3  score: 36.1 bits;  conditional E-value: 6.7e-13
                 SSHHHHTT-SSEEETTEEEEEEEETTTSBEEECCGGHCHHH.CCTT.B-TTTCC................BEEEEE--CTSB-S.HHHHHHHH...HHH CS
        SIR2  84 DgLekkaGskkvvelHGslakakcvkcekkldkeelqeeie.aekvpecekcgk................llkpdvvfFGealp.dklkklie...kve 161
                 D+   + G  +vv lHG+l k++c+ c+k  d+ ++ +++  + + p c+ c +                ll+p++v++ e+ p ++l   +     ++
  KKY23432.1 177 DKDSDYDGGCEVVPLHGDLDKLRCNLCQKLADWTDADTDLFfEGEAPPCQACSSkaqnrrnsgkrglsvgLLRPNIVLYQEQHPsEQLLAPLPsfdMAH 275
                 55556667789*********************9999888763678899****99******************************877766554131444 PP

                 H-SEEEEES--STST CS
        SIR2 162 eadlllviGtSlkVa 176
                   ++l+++GtSlkV+
  KKY23432.1 276 GPNVLIIMGTSLKVH 290
                 5689*********97 PP

>> RNA_pol_Rpb2_4  RNA polymerase Rpb2, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     6e-05      0.54      25      58 ..     106     136 ..      91     137 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6e-05
                     CCTTSS-TT-EEEE-TTT--EEEE-SSEEB-EEE CS
  RNA_pol_Rpb2_4  25 RRkgkiseevsivlnekqkevkiatDgGRvcRPl 58 
                     R  ++i++ev+ + ++++k +++  DgGR++R +
      KKY23432.1 106 R--KQIHQEVKQT-SQTHKFIRVLRDGGRLMRCY 136
                     4..4789999855.56799*************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 3552.12
//
Query:       KKY23433.1  [L=352]
Description: putative short-chain dehydrogenase reductase family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-19   68.7   0.0    1.5e-17   63.7   0.0    2.2  2  adh_short        short chain dehydrogenase
    1.2e-10   41.3   0.0    9.8e-10   38.4   0.0    2.0  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    4.3e-08   33.3   0.1    6.7e-08   32.7   0.1    1.2  1  KR               KR domain
  ------ inclusion threshold ------
      0.037   13.8   0.1      0.073   12.8   0.1    1.4  1  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 
       0.16   11.3   0.0       0.26   10.6   0.0    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   4.1e-21   1.5e-17       1     131 [.      25     160 ..      25     177 .. 0.84
   2 ?    2.9   0.0     0.018        65     171     192 ..     235     259 ..     204     262 .. 0.73

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 4.1e-21
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT.TSE..EEEEE-TTTSHHHHHHHHHHHHHHH..SSESEEEE---SS--SSG CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee.gak..alaiqvDvtdreevealvekavkkl..gkldvLvnNAGitgsgpf 93 
                 k+vl+tG   G+G+a ak++a+ Gak ++   r+ ek e++++e+ e+ +++  + + +vD++  ++v+++ +++ ++l  ++ldv+  NAG+t     
  KKY23433.1  25 KTVLITGSNTGLGLAAAKKIASLGAKRIIlGVRNLEKGERAKTEVAECaKDEllIQVKHVDMERFSSVREFAQTVCSDLgaESLDVVLLNAGVTF--LK 121
                 79************************999677999**********999744444778899*******************7779**********53..33 PP

                 GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEE CS
   adh_short  94 selseeewervievNltgvflltravlpaml.kqssGrI 131
                  ++s+e w++ i+vN  +++ll+ ++lp+++ + + G+I
  KKY23433.1 122 PHTSSEGWRSEIQVNALSTILLAILLLPKLKeSVKDGNI 160
                 4466677**********************9975666776 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.018
                 T...EEEEEEEESSBSSHHHHHHCT CS
   adh_short 171 g...irvnavaPGlvdTdmakelre 192
                 +   i +n+++PG++++++ ++ ++
  KKY23433.1 235 QdldIVINSCCPGICRSEFSRDFTQ 259
                 334499**********999887766 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   2.7e-13   9.8e-10       4     136 ..      34     175 ..      31     178 .. 0.81
   2 ?    0.4   0.0      0.11     4e+02     134     190 ..     201     265 ..     192     282 .. 0.62

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 2.7e-13
                   TSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE...E..EE--TTSHHHHHHHHHHHHHHH..SSEEEEEE-----EGCSS-GGGH-H CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae...v..lecDVtdeeqvealveevvekf..gklDilvnnagiapklkgpfletsr 92 
                    g+G a+Ak++a+ Ga+ ++  +++ +  +r+++ ++e+ ++   +   ++D ++ ++v++++++v +++  ++lD+++ nag++    +p  +ts 
    KKY23433.1  34 TGLGLAAAKKIASLGAKRIILGVRNLEkGERAKTEVAECAKDellIqvKHVDMERFSSVREFAQTVCSDLgaESLDVVLLNAGVTFL--KP--HTSS 126
                   79**************9666655554446666666666654445426599********************7779************9..77..89** PP

                   HHHHHHHHHHTHHHHHHHHHHHHHCTSC...CE..EEEEEEGGGTSBST CS
  adh_short_C2  93 eefdraldvnlyslfllakaalplmkeg...gs..ivnlssvgaervvp 136
                   e+++  ++vn+ s++lla  +lp +ke+   g+  i++ +s g +++vp
    KKY23433.1 127 EGWRSEIQVNALSTILLAILLLPKLKESvkdGNipILTFTSSGTHKYVP 175
                   ***********************88887778764477778888887777 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.11
                   BSTTTT.HHHHHHHHHHHHHHHHHHHH.......GGGTEEEEEEEE--BHCTGGGGSTTHHHHHH CS
  adh_short_C2 134 vvpnyn.aygaaKaalealtrylAvel.......gpkgiRvNavspgpikTlaasgikgfdelle 190
                    +p+++ +yg +K  le  ++ l  ++        +  i +N+ +pg+ + + ++++++++ l++
    KKY23433.1 201 FWPGHQqMYGLSKLLLELGIHILTEKViirspttQDLDIVINSCCPGICRSEFSRDFTQQSTLYS 265
                   55655556666666666666655544311111113346888999999988888888877666655 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.1   1.9e-11   6.7e-08       2      92 ..      26     118 ..      25     132 .. 0.92

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 1.9e-11
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS..S---EEEE----- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee..ppikGvihaAgvl 92 
                 t+litG   gLGl+ a+ +a+ ga++++l  R+ ++ e++k+++ae+++ +  ++v ++D    ++v++  +++ ++   +++  v+  Agv+
  KKY23433.1  26 TVLITGSNTGLGLAAAKKIASLGAKRIILGVRNLEKGERAKTEVAECAKDELLIQVKHVDMERFSSVREFAQTVCSDLgaESLDVVLLNAGVT 118
                 78********************************************************************99999887777888888888775 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1     2e-05     0.073      35      59 ..      19      43 ..       3      62 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2e-05
                     ----.-SEEEEESTSSHHHHHHHHH CS
  Eno-Rase_NADH_b 35 kiekgpkkvLviGaStGYGLAsria 59
                     +++ + k+vL+ G+ tG GLA+   
       KKY23433.1 19 AHSFTGKTVLITGSNTGLGLAAAKK 43
                     333368**************98644 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   7.4e-05      0.26      20      93 ..       9      82 ..       2      87 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.4e-05
                  TTCCHTTCCGSBS-GTTSEEEEES-.SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-S CS
  2-Hacid_dh_C 20 egewksekallgkelsgktvGiiGl.GrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesD 93
                  + ++ ++ +++ ++ +gktv i G    +G a+ak+++++g+k i+  +++ ++ e ++++v  +  +ell +  
    KKY23433.1  9 SSKY-NPPKHPAHSFTGKTVLITGSnTGLGLAAAKKIASLGAKRIILGVRNLEKGERAKTEVAECAKDELLIQVK 82
                  4556.78899999***********73469*************999999888876677777777788888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2485.46
//
Query:       KKY23434.1  [L=177]
Description: putative small nuclear ribonucleoprotein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-15   55.6   0.0    5.1e-15   54.9   0.0    1.3  1  LSM        LSM domain
  ------ inclusion threshold ------
       0.05   13.0   0.1       0.12   11.8   0.0    1.5  2  APH_6_hur  Aminoglycoside/hydroxyurea antibiotic resistance k


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   5.7e-19   5.1e-15       3      66 ..      50     118 ..      48     119 .. 0.94

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 5.7e-19
                 HHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTET.....EEEEEEEEEEEGGGEEEEE CS
         LSM   3 lkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkk.....ekrklglvliRGnnivlis 66 
                 l +l++kk+ + l++gr+l+G+L++ Dqf NlvL d++e+   +       ++k g++l+RG+n++l++
  KKY23434.1  50 LLDLTDKKLMLVLRDGRKLIGVLRSWDQFANLVLADTIERYYLPSphslyADAKRGTFLVRGENVLLLG 118
                 77899***********************************999988899999999***********986 PP

>> APH_6_hur  Aminoglycoside/hydroxyurea antibiotic resistance kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.3e-05      0.12      58     113 ..      47      98 ..      45     105 .. 0.85
   2 ?   -2.4   0.0      0.28   2.5e+03     112     136 ..     129     154 ..     125     162 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.3e-05
   APH_6_hur  58 avrvleedeeesalLLErlsgersltslvaegdDdeAtrilaellarLhapspgpl 113
                 a+++l+   +++++L+ r    r l  ++ +  D+ A  +la++++r + psp++l
  KKY23434.1  47 AAQLLDLT-DKKLMLVLRD--GRKLIGVL-RSWDQFANLVLADTIERYYLPSPHSL 98 
                 89999999.7888888776..56677777.469********************986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.28
   APH_6_hur 112 plPp.Llpleevfealfreaasdaga 136
                 p+P    ple+vf+   +++a++++ 
  KKY23434.1 129 PAPYtEAPLEQVFSIKKEQEAQRKKK 154
                 56665679999999888888776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 1163.80
//
Query:       KKY23435.1  [L=453]
Description: putative nad+ kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-79  266.1   0.0    4.2e-79  265.8   0.0    1.1  1  NAD_kinase  ATP-NAD kinase


Domain annotation for each model (and alignments):
>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.8   0.0   2.4e-83   4.2e-79       1     290 [.      72     370 ..      72     372 .. 0.95

  Alignments for each domain:
  == domain 1  score: 265.8 bits;  conditional E-value: 2.4e-83
                 .EEEEESSCGGTCSHHHHHHHHHHHCT-......EEEEECCGGCCSSSTT--HHHHTTTT--.......EEECCC-TTTTTSSSEEEEEE-HHHHHHHH CS
  NAD_kinase   1 kvgivvnpikkeaieraeevarwLldals....rvlevtveeklgeslaeaaefrsevisvlkkvkttddtrkaleafadagvdliivvGGDGTaldva 95 
                 +v+iv++ +++ ++ +++ +a+wLl+  +     +++v+v+ kl++s+ + a++  e++    ++ +  +++ +l+   ++++dl++++GGDGT+l+ +
  KKY23435.1  72 NVMIVTKAKDNRLVLLTRDLAEWLLTIPRygadIGVTVYVDAKLRNSKRFDAASLLEKDARFAHNLK--YWTPDLCWTSPEKFDLVLTLGGDGTVLFTS 168
                 69*************************55899889************99998888887775555555..9***************************** PP

                 HHHHHCT-EEEEEESSS--SS-SEEGGGHHHHHHHHHH.T-SEEEEEEEEEEEEEETTE..........EEEEEEESSEEEEEESSSSS-EEEEEEETT CS
  NAD_kinase  96 rllqkaeiPvlgvnaGvkgfltefepeaaaelleklle.geirvekrevldavimrskgee....diadiviensvlnevviirgpgstlielelyvdt 189
                 +l+q+ ++Pvl++++G++gflt+fe+e ++e l++++   ++rv++r++++++++r+++ +       +  ++  vlne+vi+rgp + +++lely d+
  KKY23435.1 169 WLFQRIVPPVLSFSLGSLGFLTNFEFERYKEHLNRVMGdVGMRVNLRMRFTCTVFRQDRSKgaepGAVEEGEQFEVLNELVIDRGPSPYVSNLELYGDN 267
                 *************************************989*******************98999966666668889*********************** PP

                 EEEEEEEESEEEEE-TGGGGTHHHHTT--EE-TT---EEEEEESESSS----EEE-TT-EEEEEE-..SS--EEEEETTTEEEEE-TT-EEEEEEESSE CS
  NAD_kinase 190 elleadqldglivstPtGstayslsaGgplisPgvlailivpicPhslssrpiVvssssklrirva..srseallaldGseelelspgdevrvtasdkk 286
                 ell+++q+dg i stPtGstayslsaGg+li+P+++ail++picPh+ls+rp+V+s+   lri v+  srs+a +a+dG+ ++el++gd+v++ as+++
  KKY23435.1 268 ELLTIVQADGCIFSTPTGSTAYSLSAGGSLIHPSIPAILLTPICPHTLSFRPMVLSDTLLLRIAVPanSRSTAYCAFDGKGRIELKQGDYVTLEASQYP 366
                 *************************************************************************************************** PP

                 EEEE CS
  NAD_kinase 287 fkli 290
                 f ++
  KKY23435.1 367 FPTV 370
                 9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3118.10
//
Query:       KKY23436.1  [L=228]
Description: putative exosome complex subunit rrp46 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-13   49.2   0.0    1.2e-12   48.5   0.0    1.3  1  RNase_PH  3' exoribonuclease family, domain 1


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   6.5e-17   1.2e-12      27     132 .]       5     115 ..       3     115 .. 0.92

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 6.5e-17
                 EEEEEEEEEEEEE-TCCG.--CCEEEECCCCECCCCEC-C...S...HHHHHHHHHHHHHHCCTC-CCGCCTCEEEEEEEEEECCC............. CS
    RNase_PH  27 kvlasvtgpieerpseer.ddaegaldveveyapfasgerrregrpsdeeielsrlleralrpsillekkpkstididitvlssdg............. 111
                 +vl+sv++p+e++ ++e  ++a   +dv+++         +++g+   +e+ l++l++  ++ +il+  +p++ ++i++++l ++g             
  KKY23436.1   5 EVLCSVNAPVEVQRRDELpNEA--FIDVHIR---------PNHGVGMIKERHLEDLVQGLVKDVILVRLWPRTAVQITLQILKNSGnegqektdsvral 92 
                 69**********6666654444..4999998.........668******************************************************** PP

                 ..S-CHHHCHHHHHHHHHCTCEE CS
    RNase_PH 112 ..gslldalinaaslALadagip 132
                    ++l al na++lAL+dag+p
  KKY23436.1  93 tyLTILPALLNATCLALLDAGVP 115
                 *********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1505.85
//
Query:       KKY23437.1  [L=374]
Description: putative guanine deaminase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-57  195.4   0.0    1.8e-57  195.2   0.0    1.0  1  Amidohydro_1     Amidohydrolase family
    3.2e-07   30.2   0.0    4.3e-07   29.8   0.0    1.2  1  Amidohydro_3     Amidohydrolase family
  ------ inclusion threshold ------
       0.02   14.6   0.0       0.05   13.3   0.0    1.6  1  tRNA_int_endo_N  tRNA intron endonuclease, N-terminal domain
      0.059   12.7   0.0      0.094   12.0   0.0    1.2  1  A_deaminase      Adenosine/AMP deaminase


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.2   0.0     4e-61   1.8e-57      29     344 .]       7     369 ..       1     369 [. 0.94

  Alignments for each domain:
  == domain 1  score: 195.2 bits;  conditional E-value: 4e-61
                   TTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTHHHHHHHHHHHTSSSEEEEEEESSEGGS..........GCCCSHHHHHHHHHHHHHHHHHHCTTT CS
  Amidohydro_1  29 ppetaaealesgiktalksGtttvadmgattstgiealleaaeelplglrilggkvsldr..........gsaetskasreklkagaaetikgkadg 115
                   + e a+ ++ ++i +++ +Gttt+ ++ + ++++++ l+  ++    g+r+l+g+v++d+          +s    ++ ++++++ +    +++++ 
    KKY23437.1   7 DVEKAQRVYTTCIDRTIANGTTTASYYATIHVESTNILASLCKTK--GQRALIGRVCMDNkevatdyyydESLPAAMEATKAVIDHI--DFLDPHGH 99 
                   5678999*********************************99998..********************76655555666666666665..56679999 PP

                   CEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHCCEEEHCTCEEEHHHHHHHHHHHHH CS
  Amidohydro_1 116 vvkvalapheapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafgetiehgthlevaeslglldeiklilahgvhltpteaellkerlke 212
                    v + l+p+++++++ + l +++++ k ++  +++H++e+  e+e +++  +    ++++++v+es gll++ k+ilah +hl+p+e  l+++r  +
    KKY23437.1 100 HVAPVLTPRSCVSCTHDFLLQLADLSKNKGHRIQTHLSENVDEIELVHRIWP---GSESYTDVYESHGLLTD-KTILAHAIHLSPSEQSLIAQR--G 190
                   999*************************************************...9999*************.*********************..* PP

                   HCEEHHHHHHHHSEHHHHHHHHHHHHTSCEEEEEECTTSSCCGGHHHHHHHHHHHHHHCCTT..TTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS- CS
  Amidohydro_1 213 agvahcpfsnsilrsgrealrkaldeGvkvglgtDgaasgnslnlleelrlalklqrgllye..deegglslkealrmaTingAkalglddkvGsie 307
                   a+++hcp sns l+sg++++r +ld+G+ vglgtD  + g s+++le +r+a++++r+l+++  de+ +ls++eal +aT +gA+++g+ ++vG++e
    KKY23437.1 191 AKISHCPVSNSALGSGICPVRTLLDAGITVGLGTD-ISGGYSPSILEIVRQACLVSRLLAQSkeDERLKLSVEEALWLATRGGAEVVGWKNRVGAFE 286
                   ***********************************.*************************9*********************************** PP

                   TTSB--EEEECCCT..............................................CGGGTTTCTSEEEEEEEETTEEE CS
  Amidohydro_1 308 vGkdADlvvvdldi..............................................laafvglkkdgnvkkvivkGklv 344
                    G ++D+ ++  d+                                              +a++v+  +d+n+++v+++G+lv
    KKY23437.1 287 SGMQWDAQLIRFDSvpsgtddtkeasvtgekhgipddhpenvegeetnvkifgwenwedrIAKWVYAGDDRNTRRVWIGGRLV 369
                   **********88445678888999********************************************************997 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   9.6e-11   4.3e-07     311     472 ..     172     369 ..     141     370 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 9.6e-11
  Amidohydro_3 311 lehaegvtesqiervaalqvaagvqpvfnfedelldsrlgperargstpvkellnagvkvalgsDapvgpfdpwpri..gaavmrktrrggevlrpd 405
                   l+ha  +++s+ + +a  ++ ++ +pv+n            + ++g+ pv++ll+ag++v lg+D  +g   ++ +i  +a++ ++  +++   +++
    KKY23437.1 172 LAHAIHLSPSEQSLIAQRGAKISHCPVSNS-----------ALGSGICPVRTLLDAGITVGLGTDISGGYSPSILEIvrQACLVSRLLAQS-KEDER 256
                   556666688888889999999999999988...........778899******************88888888888866789999999885.66677 PP

  Amidohydro_3 406 eelsleealalyTrgpAkalgledrkGtLevGa..dADlvvldadpldvdppelaear....................................... 461
                    +ls+eeal+l Trg+A+++g   r G  e G+  dA l+ +d  p   d+++ a+++                                       
    KKY23437.1 257 LKLSVEEALWLATRGGAEVVGWKNRVGAFESGMqwDAQLIRFDSVPSGTDDTKEASVTgekhgipddhpenvegeetnvkifgwenwedriakwvya 353
                   789*****************************95558888888888888888777777788888888888888888888888888888888888888 PP

  Amidohydro_3 462 .....vrltvvdGrvv 472
                         r ++++Gr v
    KKY23437.1 354 gddrnTRRVWIGGRLV 369
                   8888888888888877 PP

>> tRNA_int_endo_N  tRNA intron endonuclease, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.1e-05      0.05      31      55 ..     252     276 ..     233     286 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
                      CCTSSEEEEHHHHHHHHHTTSEEEE CS
  tRNA_int_endo_N  31 lidepLqLslvEAlYLlekGklevv 55 
                      ++de+L Ls +EAl L+ +G  evv
       KKY23437.1 252 KEDERLKLSVEEALWLATRGGAEVV 276
                      789****************976666 PP

>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.1e-05     0.094     220     277 ..     174     225 ..     154     235 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.1e-05
                  E-GGGGGSHHHHHHHHHCT-EEEE-HHHHCCCSST-TTTT-CHHHHHHTT-EEEE--B CS
  A_deaminase 220 HGvrlrkdpvLqyllalaqiplevcPlSNvalgafleyaenPlkeflerglnvslntD 277
                  H ++l   p  q l a++  ++  cP+SN al         P++++l++g+ v l+tD
   KKY23437.1 174 HAIHLS--PSEQSLIAQRGAKISHCPVSNSAL----GSGICPVRTLLDAGITVGLGTD 225
                  555553..4447899999**************....77889****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2705.36
//
Query:       KKY23438.1  [L=443]
Description: putative mannose-6-phosphate class i [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.1e-138  459.5   0.0   1.1e-137  459.3   0.0    1.0  1  PMI_typeI  Phosphomannose isomerase type I


Domain annotation for each model (and alignments):
>> PMI_typeI  Phosphomannose isomerase type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  459.3   0.0  5.9e-142  1.1e-137       1     371 [.       5     394 ..       5     396 .. 0.93

  Alignments for each domain:
  == domain 1  score: 459.3 bits;  conditional E-value: 5.9e-142
                 EEEEEEEEEE-TTBEECGGSHHHHHHHHH-TT.....TTSCEEEEEEC--TTS-EECTTTC..CCCHCHHHHHHHTGHHHCCHHTSS-SEEEEEEEESS CS
   PMI_typeI   1 lfkLqcgvqnyaWGkiGsesalakllaasdPs...ieedkpyaElWmgtHpkgpskvlnkk..lkdvvlkellaelresvgkkfgeelpfLfKvLsvek 94 
                 l++Lqcgv+ y+WGk+G +sa+ak++a+++     i+edkpyaElWmgtHp++psk++ +   l d+v+++ +a+++++++ k++++lpfLfKvLs++k
  KKY23438.1   5 LIRLQCGVNTYDWGKKGKDSAAAKYAATTASTdfsIQEDKPYAELWMGTHPSLPSKDVTTGrsLLDLVSDN-QALMGQEITSKYSSKLPFLFKVLSISK 102
                 689*********************99988554555*********************8776668*****999.9************************** PP

                 ---EEE---HHHHHHHHHH.TCCCHCCCTTTEEEEESS.EEEEEEE..HHHHHHHCCCEHCCHCCCECCHHCCHHHHHHCCHTTSHHHHCCCCHHCCHC CS
   PMI_typeI  95 vlSiqvHPdKklaeilhaadpknYpddNhkpElaiAltdFeglcgfrpleeiveflkkvselaeligeetaksleelvslieagdpealkkkkvlqklF 193
                 +lSiq+HP+Kklae+lh++dp+nYpddNhkpE++iA+t+Feglcgfrple+i++fl +v++l+ l+g+e+a  le++   ++    + +  k++l++ F
  KKY23438.1 103 ALSIQAHPNKKLAEKLHENDPRNYPDDNHKPEMTIAITPFEGLCGFRPLEQIAHFLRTVQPLKVLVGDEQALGLEQTAADEA---SDLVSSKSSLRSAF 198
                 **************************************************************************99998888...66666889****** PP

                 HCCCTTTHHCCCHCCCCCCCCCCC-H......HHCCCC-HHHHCCHCHHHSTTTTCHCH.TTEEEEEE.TT.EECCHCCHHCECCEEEEEEEEES-EEE CS
   PMI_typeI 194 ssllnsekekikqklallveriqssd......aevnktdlaelidrlneqyPddiGlfa.llLNlvkLnpGEAmflkandphaylsGdivecmaasdnv 285
                 ++ll+s+ke +    ++lv+ +++ +      +++ + +l+eli rln q+P+diGlf+ ++LN+v+L pGEAmflka+d+hay+sGdi+ecma+sdnv
  KKY23438.1 199 THLLKSNKEDVAAMSKELVQLAEEGKiepppdSNITTSELTELIVRLNGQFPGDIGLFVmFFLNYVRLSPGEAMFLKADDIHAYISGDIIECMASSDNV 297
                 ************999999998887765557666666777************************************************************ PP

                 EECCCECCEEECHCCHCH.EEEEEECCCCEE--BS.CEECE..........EEEEEECCCCECCEEECCCTTEEEEE-TTS-EEEEEEECEEEEEEC CS
   PMI_typeI 286 vRaGlTpKfidvkelvemltYkykpsdelklqqte.sllda..........svlydppieefavektklkkgeatilplesasiliaveGtatiivs 371
                 +RaG+TpKf dv++l+e ltY+++p +++kl+    ++ +            +lydppieef+v kt+l+kg+at++p +++si+i+++G ++i+v+
  KKY23438.1 298 IRAGFTPKFQDVNTLTEILTYDHDPPEKQKLETSPwPYVKFdrpaysagseCLLYDPPIEEFSVLKTDLSKGKATFDPINGPSIIICTSGSGKISVG 394
                 *******************************9666634333444666677799*****************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3231.21
//
Query:       KKY23439.1  [L=280]
Description: putative saga complex component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-32  112.7   0.1      2e-32  112.1   0.1    1.3  1  DUF1325         SGF29 tudor-like domain
    0.00031   20.5   0.0    0.00065   19.5   0.0    1.5  1  LBR_tudor       Lamin-B receptor of TUDOR domain
  ------ inclusion threshold ------
      0.042   13.7   0.1       0.17   11.7   0.0    2.0  2  Tudor_3         DNA repair protein Crb2 Tudor domain
      0.094   12.7   0.0       0.16   11.9   0.0    1.4  1  Microvir_lysis  Microvirus lysis protein (E), C terminus
      0.094   12.7   0.0       0.21   11.6   0.0    1.6  1  DUF4537         Domain of unknown function (DUF4537)


Domain annotation for each model (and alignments):
>> DUF1325  SGF29 tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.1   5.5e-36     2e-32       2     131 ..     152     277 ..     151     278 .. 0.88

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 5.5e-36
     DUF1325   2 geeVaakekk.kekeeeeewilaeVvk....iegkknrYeveDadpdeekekkkyklsaksiiplpkskakpesklaefpkgkkVLAlYPeTTtFYkAe 95 
                 g eV +k++k ++ ++e+e i++++ +    +++k+ +Y+v+D+d +++ e+k+yk++a  +ip+p   a     +++f  gk+VLA+YP+TTtFY+Ae
  KKY23439.1 152 GAEVMFKHNKkQNGQQEGEGIQCVIKHtsgdGQKKRITYDVQDID-EDQVERKTYKTTAAYLIPIPLAGAP----TPTFGIGKQVLARYPDTTTFYRAE 245
                 789***777758889999*******9988444455555*******.55667789****************9....79********************** PP

     DUF1325  96 VvaspkkkekeyklkFeddeeedkereVerrlVvel 131
                 V++ +   +++y+lkFe++e++ ke+eV+rrlV+++
  KKY23439.1 246 VMSIQ---KDTYRLKFEGEEDD-KEMEVDRRLVLDI 277
                 ***65...7***********99.6888******985 PP

>> LBR_tudor  Lamin-B receptor of TUDOR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.8e-07   0.00065       2      42 ..     221     259 ..     220     271 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.8e-07
   LBR_tudor   2 pskkfqdgevVmgRWPGSsLyyevkvlsfdekkqlYtVkyk 42 
                 p+  f+ g  V++R+P  + +y+ +v+s ++++  Y+ k++
  KKY23439.1 221 PTPTFGIGKQVLARYPDTTTFYRAEVMSIQKDT--YRLKFE 259
                 56789*************************999..***997 PP

>> Tudor_3  DNA repair protein Crb2 Tudor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.67   2.4e+03      39      49 ..     190     200 ..     176     203 .. 0.64
   2 ?   11.7   0.0   4.8e-05      0.17       3      40 ..     229     262 ..     227     273 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.67
                 S-EEEEETTSE CS
     Tudor_3  39 gtpeevdskqv 49 
                 ++++++d++qv
  KKY23439.1 190 YDVQDIDEDQV 200
                 34666666666 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 4.8e-05
                 GEEEEE-SSSS--EEEEEEEEEEE-SSSEEEEEETTS- CS
     Tudor_3   3 nrVfAlfkGkkraYYPAtclgvsssgsqrykVrFdDgt 40 
                 ++V+A +++ +  +Y A +++ ++++   y+ +F++ +
  KKY23439.1 229 KQVLARYPD-TTTFYRAEVMSIQKDT---YRLKFEGEE 262
                 69******5.99*************7...*****9874 PP

>> Microvir_lysis  Microvirus lysis protein (E), C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.6e-05      0.16       2      26 ..      61      85 ..      60      91 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.6e-05
  Microvir_lysis  2 PvssWkALnLRktLLmAssvRLkPL 26
                    P +s kA n+++t  mA s+ L P 
      KKY23439.1 61 PTASSKARNIKRTTTMATSIDLEPT 85
                    88999*****************995 PP

>> DUF4537  Domain of unknown function (DUF4537)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.8e-05      0.21       1      43 [.     228     272 ..     228     280 .] 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.8e-05
     DUF4537   1 gqkVlaRreeDGfYyrgtvkkrlngrqylvef...eaeetqeveer 43 
                 g++VlaR+ +  ++yr+ v +  ++++y  +f   e++++ ev +r
  KKY23439.1 228 GKQVLARYPDTTTFYRAEVMSI-QKDTYRLKFegeEDDKEMEVDRR 272
                 789*****************98.88999999977666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1758.67
//
Query:       KKY23440.1  [L=730]
Description: putative actin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.5e-102  343.3   0.0   6.6e-102  341.2   0.0    1.8  1  Actin         Actin
    2.5e-45  155.0   0.0    3.2e-45  154.6   0.0    1.1  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
       0.25   10.1   0.0       0.68    8.7   0.0    1.8  1  MreB_Mbl      MreB/Mbl protein


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.2   0.0  1.1e-105  6.6e-102       5     381 ..       4     360 ..       2     367 .. 0.96

  Alignments for each domain:
  == domain 1  score: 341.2 bits;  conditional E-value: 1.1e-105
       Actin   5 savVlDnGssttraGyagedaPkavipslvgkprgrkvea.......klyvgdealtkrpelevrspvedGvvedwdaveelwehvlkeelkvdpeehp 96 
                   +VlD G++++++Gyag ++P++  ps+vg+p  r++e        ++ +gdea + r++l++++p+e+G+v+ wd++++lw+ ++ e+lk+dp+  +
  KKY23440.1   4 APIVLDGGTGFLKVGYAGQNFPEHQYPSIVGRPILRSEERdgdivvkDIMCGDEAAAARSMLQISYPMENGIVKKWDDMQHLWDFTFAEKLKIDPSGRK 102
                 579****************************9999987779999**99*************************************************** PP

       Actin  97 llltepplnppkqrekalEivfEkfkvpalylaksavlsafasgkstglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellssknvevt 195
                 +lltepp+np k+re+++E++fE +++ ++y+a +avl+++a+g+s+g+vvDsG++vt++vpV++  vL++ +rr+d++G+++t++l +ll ++     
  KKY23440.1 103 ILLTEPPMNPLKNREQMCEVMFERYNFGGVYVAIQAVLALYAQGLSSGVVVDSGDGVTHIVPVYESTVLNHLTRRLDVAGRDVTRNLIALLLRR----- 196
                 *******************************************************************************************998..... PP

       Actin 196 prylikkkkvveaessaekeelekltesyktleeeevleeiKesvcevsedpegdeekss..sspeksYeLPDgseiklgeeRfkvpEiLFdpsligse 292
                                          +++++ +++ e++++iKe++c+vs+d e d++ s+  +   +sY+LPDg++i +g+eRf++pE+LF+p+l+  e
  KKY23440.1 197 -------------------------GYALNRTADFETVRQIKEKLCYVSYDLELDQKLSEetTVLVESYTLPDGRVIRVGSERFEAPECLFQPHLVDVE 270
                 .........................9**************************985555544499999******************************** PP

       Actin 293 saleeekskllgiselivaainacdvdlrpeLlanivvtGGnsllpglteRlekelaql...........askgvkvkiiapeeerkysaWiGGSiLAs 380
                 +          gi+e ++++i+a+dvd+r++L+  iv++GG+s++pgl +Rlekel+ql             +++kv+i  p+ +r++++++GG++LA+
  KKY23440.1 271 QP---------GIAEFLFNTIQAADVDVRSSLYRAIVLSGGSSMYPGLPSRLEKELKQLwltrvlqgnpeRLNKFKVRIEDPP-RRRHMVFLGGAVLAN 359
                 *9.........************************************************8888888877777777********.**************8 PP

       Actin 381 l 381
                 +
  KKY23440.1 360 I 360
                 6 PP

>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.6   0.0   5.3e-49   3.2e-45       2     291 ..     411     716 ..     410     719 .. 0.91

  Alignments for each domain:
  == domain 1  score: 154.6 bits;  conditional E-value: 5.3e-49
                   EEEE-SSS-ST......TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgsk.....eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskenireslees 93 
                   l+lG++++g +     + +s+++ ++ l++  + G+  +DtA +Y  g  e +  ea  +    +  + ia+Kv     + +  +s++ +re+ e+s
    KKY23440.1 411 LILGLMTIGPDeskgaRITSMSDYQKCLDYLASKGYFELDTAGSYVGGLQEAFTREAGYE----KRGFSIASKV---YPDKPGVHSPKTLRERWEAS 500
                   899******999999888999************************999999999999999....999*******...333445589*********** PP

                   HHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EE CS
  Aldo_ket_red  94 lkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynllreleeegllelckkkgvpl 186
                   l++Lgt +  +++lH pd+s+p  ee+l+ +++++keGk   +G+Sn++++ + ++    ++ + vk++++q  yn  ++  e++ll+ ++k+g+ l
    KKY23440.1 501 LEKLGTTCPEIFYLHAPDRSVP-FEETLEEVNKMHKEGKFVKLGLSNYAAWEVAEIvgicQRRGFVKPTIYQGMYNAITRALESELLPCLRKYGISL 596
                   **********************.**************************55555555**************************************** PP

                   EEBSTTGGGTTGTTTSS---SSSCCC-------.........TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTS.......TT-SEEEE--SSH CS
  Aldo_ket_red 187 iaysplggGlltgkyqseedkedkeprkdlkrd.........ertsknldaaeelselakehgvslaqlalryalsq.......pavgivipgasni 267
                   + y pl+gGl++gky + + ++++     +  +            ++ l a+ +++ +ak hg sl ++alr+++ +        +   +i+g s+ 
    KKY23440.1 597 VIYNPLAGGLFSGKYSTLSTPDSGRFSNTS--StsgamyrsrYFKPEILAALGIIEPVAKAHGLSLIEVALRWCIWHsqlnikdGGDDGIILGISSF 691
                   ****************99998766555444..34599***98888999***************************8888888777999********* PP

                   HHHHHHHGGGG-.---HHHHHHHHH CS
  Aldo_ket_red 268 eqlednldalel.klseeevaelde 291
                   +ql  n++a+e  +l++e+v++ld+
    KKY23440.1 692 DQLVGNVEACEKgELPAEVVEALDK 716
                   **********999**********98 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00011      0.68     145     298 ..     148     318 ..      61     323 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00011
                 S-EEEEEE-SS-EEEEEEETTEEEE..EEEES-SHHHHHHHHHH.HHHHHHSEE..--HHHHHHHHHHH-BSS--HHHH.....EEEEEEEETTTTCEE CS
    MreB_Mbl 145 sgnmvvdiGggttevavislggivt..sksvrvaGdeldeaiik.yirkkynll..iGertaekikieigsavkeeeee.....kmeikGrdlvtglpk 233
                 s+ +vvd G g t ++ +  + +    ++++ vaG ++  ++i  ++r+ y l      +t+++ik ++ ++  + e +     ++++     +    +
  KKY23440.1 148 SSGVVVDSGDGVTHIVPVYESTVLNhlTRRLDVAGRDVTRNLIAlLLRRGYALNrtADFETVRQIKEKLCYVSYDLELDqklseETTVLVESYTLPDGR 246
                 456899*******9988877666642267899***999988766267999988621556899*****99988765443331223333333333333346 PP

                 EEEEEHH..HHHHHHHHH.HHH.....HHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHS CS
    MreB_Mbl 234 evevsse..evrealkep.vsa.....iveavkevLektppeLaadivdrgivltGGgallkgldkllseetg 298
                  ++v se  e  e+l +p +       i e + ++++++  +  + +  r+ivl+GG+++  gl + l++e++
  KKY23440.1 247 VIRVGSErfEAPECLFQPhLVDveqpgIAEFLFNTIQAADVDVRSSL-YRAIVLSGGSSMYPGLPSRLEKELK 318
                 77777761244566655423331112255555555666666665555.489**************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 5458.56
//
Query:       KKY23441.1  [L=304]
Description: hypothetical protein UCRPC4_g02889 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-11   44.0  24.8    5.7e-07   29.8   2.4    2.2  2  EamA             EamA-like transporter family
    2.8e-06   26.5   3.4    3.8e-06   26.1   3.4    1.2  1  CSG2             Ceramide synthase regulator
     0.0023   18.3  11.8      0.037   14.5   2.4    3.9  4  DUF202           Domain of unknown function (DUF202)
  ------ inclusion threshold ------
      0.032   13.4   4.3      0.065   12.4   0.0    2.1  2  Nuc_sug_transp   Nucleotide-sugar transporter
      0.039   13.3   5.9      0.039   13.3   0.3    2.2  2  TPT              Triose-phosphate Transporter family
      0.045   13.3   2.6       0.15   11.6   2.6    2.1  1  SLC35F           Solute carrier family 35
      0.049   12.9   0.1      0.049   12.9   0.1    2.2  2  PUNUT            Purine nucleobase transmembrane transport
       0.51   10.2  12.2        3.4    7.5   0.0    3.0  2  DUF2955          Protein of unknown function (DUF2955)
        2.4    8.4   6.3       0.75   10.0   0.3    2.4  2  DMT_6            Putative member of DMT superfamily (DUF486)
        4.6    8.1   8.9        0.1   13.4   1.1    2.3  2  DUF3817          Domain of unknown function (DUF3817)


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   2.4   3.2e-10   5.7e-07      68     136 ..      26      94 ..       7      95 .. 0.85
   2 !   20.1  14.7   3.1e-07   0.00055       3     136 ..     127     273 ..     125     274 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 3.2e-10
        EamA  68 lllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                  +l + + ++a + ++ a+  t++s  + i + +  f+ ++sv+llg kl + ++++++++++Gvl++ 
  KKY23441.1  26 TVLVTCALTVAGGSWYVAVDLTTPSDLTAIYNCSAFFAYVFSVFLLGDKLRWDKIVSVAIAIAGVLIVA 94 
                 44555555666679****************************************************986 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 3.1e-07
        EamA   3 gillallaalfwaiyfvlskil...lrkv....spltltfvrfliagill......liiallkegklaklslkdwllllllgllgtvlafllffyalkk 88 
                 g l++ ++++++++y vl k+l    + +      ++++++ +li+ + l      l+i+ +++  + ++++   + ll +++l+++ + + f+ +++ 
  KKY23441.1 127 GNLIIGVGSVLYGLYEVLYKKLacpPEGTspgrGMIFANTFGTLIGCFTLlvlwipLPILHYTGLEPFEMPRGKTAGLLAISTLSNATFSGSFLVLMSL 225
                 56666677778888888887775553333222223344444444444444244444444555555556999999************************* PP

        EamA  89 tsasnaslitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                 ts+   s++ +l+  +++i  + + g++l+  ++lg + i+++ l+++
  KKY23441.1 226 TSPVLSSVAALLTIFLVAIVDWMITGKPLSGATILGGMAIIIAFLMLS 273
                 *******************************************99987 PP

>> CSG2  Ceramide synthase regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   3.4   2.1e-09   3.8e-06     137     370 ..      18     251 ..       2     276 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 2.1e-09
        CSG2 137 tlkyvakllil.slllviavltynlaLslsPafdvaliqntsiFeivtLLygvcgiarrknvfrnflvmmvaligilivsYtkatCDlLaGklsinket 234
                  + y+++ ++l +  l +a  ++ +a+ l+   d++ i n s+F   + +++v+ +  + +   + + + +a+ g+liv+Y         G  s   + 
  KKY23441.1  18 PIPYMLRTTVLvTCALTVAGGSWYVAVDLTTPSDLTAIYNCSAF--FAYVFSVFLLGDKLR-WDKIVSVAIAIAGVLIVAYGDKAP--KHGSHSGGGSK 111
                 5667777766625678899***********************99..577899999988765.78899999***********86655..479999999** PP

        CSG2 235 Gel..nDpfLFDRLkgaLiCGLgaLtiGpfavlwnrWfa....eskkaslvkqsehlsligiislilllpflpklssssesisllysdksfwltllvsi 327
                 Ge+  +D    +R  g Li G+g++  G++ vl+++  +    +s  + ++   +  +lig+++l++l   lp l+ +      +   k+  l ++ ++
  KKY23441.1 112 GEIdpEDAEASNRAIGNLIIGVGSVLYGLYEVLYKKLACppegTSPGRGMIFANTFGTLIGCFTLLVLWIPLPILHYTGLEPFEMPRGKTAGLLAISTL 210
                 **95559999***************************99999877788888888899************99**99997777778888999888777777 PP

        CSG2 328 lfGtlpnllsllelnrkaspeylttvnlgiiifmgladwicep 370
                    t+    s l l   +sp  ++   l +i +++++dw++  
  KKY23441.1 211 SNATFSG--SFLVLMSLTSPVLSSVAALLTIFLVAIVDWMITG 251
                 6666554..6777788899********************9754 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.3    0.0052       9.3      27      58 ..      65      96 ..      53      98 .. 0.81
   2 ?    0.1   0.0      0.62   1.1e+03      44      61 ..     125     142 ..     101     149 .. 0.71
   3 ?   -1.4   0.1       1.9   3.4e+03      47      59 ..     168     180 ..     152     185 .. 0.71
   4 !   14.5   2.4     2e-05     0.037      18      63 ..     235     280 ..     226     285 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0052
      DUF202 27 llrffltgepsalgkilglilivlgiltllvg 58
                ++ +fl g++ ++ ki++++++++g+l++++g
  KKY23441.1 65 VFSVFLLGDKLRWDKIVSVAIAIAGVLIVAYG 96
                4445667999999****************997 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.62
      DUF202  44 glilivlgiltllvglvr 61 
                 +++ +++g+ ++l+gl+ 
  KKY23441.1 125 AIGNLIIGVGSVLYGLYE 142
                 344567777777777775 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.9
      DUF202  47 livlgiltllvgl 59 
                   ++g++tllv +
  KKY23441.1 168 GTLIGCFTLLVLW 180
                 4577888888766 PP

  == domain 4  score: 14.5 bits;  conditional E-value: 2e-05
      DUF202  18 lalialglallrffltgepsalgkilglilivlgiltllvglvryl 63 
                  +l+++ +a++ +  tg p +++ ilg ++i++++l+l+++++r +
  KKY23441.1 235 ALLTIFLVAIVDWMITGKPLSGATILGGMAIIIAFLMLSWATYREM 280
                 345555555555555******9*********************965 PP

>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.6e-05     0.065     101     188 ..      41     137 ..      26     153 .. 0.73
   2 ?   -0.9   4.3      0.42   7.5e+02     264     313 ..     222     271 ..     204     273 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.6e-05
  Nuc_sug_transp 101 yvalsnLdaatyqvtyqlkilttalfsvllLkrklskkqWlslllLvaGvalvqlkqkeseesekaaaaa.........keensvlGliavlaac 186
                     yva++  + +  +  y    +   +fsv+lL+ kl   + +s+ + +aGv +v + +k  ++ ++++  +         +++n+ +G   + +  
      KKY23441.1  41 YVAVDLTTPSDLTAIYNCSAFFAYVFSVFLLGDKLRWDKIVSVAIAIAGVLIVAYGDKAPKHGSHSGGGSkgeidpedaEASNRAIGNLIIGVGS 135
                     7777777777777777778888889******************************9888766555444334666666665555555555444444 PP

  Nuc_sug_transp 187 ll 188
                     +l
      KKY23441.1 136 VL 137
                     44 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.42
  Nuc_sug_transp 264 vvkyaDnilkgfatslaiilstvasvllldlkitllFllGallviaavfl 313
                      +  +  +l + a+ l+i l++++ +++ +  ++   +lG + +i+a ++
      KKY23441.1 222 LMSLTSPVLSSVAALLTIFLVAIVDWMITGKPLSGATILGGMAIIIAFLM 271
                     566677799999********************************999775 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   2.2e-05     0.039      95     136 ..      53      94 ..       6      97 .. 0.74
   2 ?    2.6   0.9     0.041        73     237     283 ..     220     266 ..     162     279 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.2e-05
         TPT  95 htvKasePiFtvilsrlllgeklsllvylsLlpivgGvalas 136
                   +  +  +F+ ++s +llg+kl   +++s+ + ++Gv + +
  KKY23441.1  53 TAIYNCSAFFAYVFSVFLLGDKLRWDKIVSVAIAIAGVLIVA 94 
                 556778889****************************99865 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.041
         TPT 237 ymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavai 283
                   +++ +spv  sva  +   +v ++  ++ ++p+s  +++G +  i
  KKY23441.1 220 LVLMSLTSPVLSSVAALLTIFLVAIVDWMITGKPLSGATILGGMAII 266
                 34456667777777777666666666667777777777766644333 PP

>> SLC35F  Solute carrier family 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.6   8.2e-05      0.15     114     185 ..      64     149 ..      38     273 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.2e-05
      SLC35F 114 lvlswlflkvryrlvkiigvvvcilGvvllvvsdv......lag..r......ransgsnpvlGdllvlaGatlyavsnvleeylv 185
                  v+s ++l  + r+ ki++v++ i+Gv ++ + d       ++g  +      ++  +sn+ +G+l++ +G+ ly++ +vl   l+
  KKY23441.1  64 YVFSVFLLGDKLRWDKIVSVAIAIAGVLIVAYGDKapkhgsHSGggSkgeidpEDAEASNRAIGNLIIGVGSVLYGLYEVLYKKLA 149
                 5789999************************9996221111222111111111234567889999999999999998888766655 PP

>> PUNUT  Purine nucleobase transmembrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   2.7e-05     0.049     277     317 ..      58      98 ..      47     102 .. 0.86
   2 ?    0.4   1.0      0.17     3e+02     259     317 ..     219     280 ..     202     285 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.7e-05
       PUNUT 277 vllpvvsvlavilfrdkfsavkgvalllailgfasYvYgey 317
                 ++   + v+ v+l+ dk+ + k+v++++ai g+   +Yg +
  KKY23441.1  58 CSAFFAYVFSVFLLGDKLRWDKIVSVAIAIAGVLIVAYGDK 98 
                 55566789*************************99999875 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.17
       PUNUT 259 avgLvflvSslfsnvistvllpvvsvlavilfrdkfsavkg...valllailgfasYvYgey 317
                  + L+ l+S ++s v   +++ +v+++  ++    +s+  +   +a+++a+l ++  +Y+e+
  KKY23441.1 219 FLVLMSLTSPVLSSVAALLTIFLVAIVDWMITGKPLSGATIlggMAIIIAFLMLSWATYREM 280
                 45677888999999999999999999888888888877665111566666666666666655 PP

>> DUF2955  Protein of unknown function (DUF2955)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0019       3.4      23      57 ..      59      93 ..      51      97 .. 0.85
   2 ?    1.4   9.7      0.14   2.6e+02      57     119 ..     220     282 ..     165     288 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0019
     DUF2955 23 lgvfapvlpvllLtlvpklslkallqlllsvvlta 57
                 ++fa v+ v+lL+++ ++ + + ++++++ vl++
  KKY23441.1 59 SAFFAYVFSVFLLGDKLRWDKIVSVAIAIAGVLIV 93
                68*****************9999998888777665 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.14
     DUF2955  57 alevlllvellqhyPvlmtllvflllllkfrlmsrgskflfgamlvislsillvfasydttdv 119
                  + + l +++l++   l+t+++++++ +++      +  ++g m +i+  ++l  a+y ++d 
  KKY23441.1 220 LVLMSLTSPVLSSVAALLTIFLVAIVDWMITGKPLSGATILGGMAIIIAFLMLSWATYREMDE 282
                 3445678999*******************999999999999999999999********99985 PP

>> DMT_6  Putative member of DMT superfamily (DUF486)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   0.00042      0.75      75     104 ..      64      93 ..      38      94 .. 0.83
   2 ?    0.6   0.9      0.35   6.3e+02      64     103 ..     232     271 ..     218     273 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00042
       DMT_6  75 vlfsvlllkeklklnhlvaflllvlavyfv 104
                  +fsv+ll++kl+++++v++++ +++v++v
  KKY23441.1  64 YVFSVFLLGDKLRWDKIVSVAIAIAGVLIV 93 
                 579*******************99999886 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.35
       DMT_6  64 iiqevitlvvfvlfsvlllkeklklnhlvaflllvlavyf 103
                  +   +t+ +++++ +++ +++l+  ++++ + +++a ++
  KKY23441.1 232 SVAALLTIFLVAIVDWMITGKPLSGATILGGMAIIIAFLM 271
                 5555667777777788888899999999999999988765 PP

>> DUF3817  Domain of unknown function (DUF3817)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.1   5.7e-05       0.1      39      70 ..      60      91 ..      21      94 .. 0.88
   2 ?   -1.9   1.0       3.4     6e+03      35      35 ..     210     210 ..     166     249 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.7e-05
     DUF3817 39 lfvvYlllalllaskmrWslkrlvllllagvv 70
                +f++Y+++++ll  k+rW+    v +++agv+
  KKY23441.1 60 AFFAYVFSVFLLGDKLRWDKIVSVAIAIAGVL 91
                79****************************95 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.4
     DUF3817  35 v 35 
                 +
  KKY23441.1 210 L 210
                 0 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       875  (0.0488036); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2038.41
//
Query:       KKY23442.1  [L=544]
Description: putative myo-inositol-1-phosphate synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.6e-137  458.2   0.0   1.9e-137  458.0   0.0    1.0  1  NAD_binding_5   Myo-inositol-1-phosphate synthase
    6.8e-44  148.6   0.8    1.2e-43  147.8   0.8    1.4  1  Inos-1-P_synth  Myo-inositol-1-phosphate synthase


Domain annotation for each model (and alignments):
>> NAD_binding_5  Myo-inositol-1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  458.0   0.0  2.2e-141  1.9e-137       1     322 []      83     526 ..      83     526 .. 0.98

  Alignments for each domain:
  == domain 1  score: 458.0 bits;  conditional E-value: 2.2e-141
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_5   1 lGvllvGlgGnngtTlvagvlankkglswetkeglkkanylGsvtqsstirlGkdeeegedvyvpikdllplvnpndlvfgGwDisslnlaeamer 96 
                    lG++lvG+gGnngtT++ag+ an+ gl+w+t++gl++an++Gsv++ sti+lG+d+++ge+++vp+++++p+++p+++v+gGwDis++ +a+am+r
     KKY23442.1  83 LGLMLVGWGGNNGTTITAGIHANRYGLQWDTRDGLQSANWYGSVVMGSTIKLGTDSKTGEEIFVPLNSIVPMAQPENIVVGGWDISAMSIADAMDR 178
                    7*********************************************************************************************** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxx RF
  NAD_binding_5  97 akvldkdlqeqlkpelekikplksvydkdfiaanqeeradnvlkgk.skleqleqirkdireFkkknkldkvivlwtanTEryie......vipgv 185
                    akvl+++l++q+++  ++++pl++ y+++fiaanq+era+nvl+g+   +++++qi++dir+Fk+kn+ld vivlwtanTEr+++         gv
     KKY23442.1 179 AKVLQPTLKQQVRKAFSQMVPLPAPYYPSFIAANQGERANNVLEGSkACTAHVQQIKNDIRDFKAKNGLDSVIVLWTANTERFSDrtpgqnSLVGV 274
                    *******************************************99856789**********************************55554445579 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................. RF
  NAD_binding_5 186 ndtlenllkaikeneeeispstiyavAailegvpyingsPqntlvpglvelAekkgvfiaGdDfKt.............................. 251
                    ndt++nllkai+e++eei+psti+avA+i+egvpyingsPqnt+vpg++elAe++g++i+GdDfK+                              
     KKY23442.1 275 NDTADNLLKAIEEEHEEIAPSTIFAVACIEEGVPYINGSPQNTFVPGAIELAERHGAYIGGDDFKSgqtkmksalvdfminagikltsiasynhlg 370
                    ************************************************************************************************ PP

                    ....................................................................................xxxxxxxxxxxx RF
  NAD_binding_5 252 ....................................................................................lLAaPlilDLvl 263
                                                                                                        lLAaPli+DLvl
     KKY23442.1 371 nndgmnlssaeqfrskeisksnvvddmvaantvlykkgehpdhtvvikympavgddkramdeyfaeiflgghqmismtnmcedsLLAAPLIIDLVL 466
                    ************************************************************************************************ PP

                    xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_5 264 lveLaqrvevkk.ekkkefkklesvlsllsyflKaPlvskgtkvvnalfkQraalenilR 322
                    ++e+++r+++k+  ++ +fk+++svls+lsy+lKaPl+++gt+vvnal+kQraal+ni+R
     KKY23442.1 467 VTEMMTRITWKRdGDDGDFKRFHSVLSILSYMLKAPLTPPGTPVVNALAKQRAALTNIFR 526
                    ***********746789*****************************************99 PP

>> Inos-1-P_synth  Myo-inositol-1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.8   0.8   1.3e-47   1.2e-43       1     109 []     341     454 ..     341     454 .. 1.00

  Alignments for each domain:
  == domain 1  score: 147.8 bits;  conditional E-value: 1.3e-47
                     SHHHHHHHHHHHHHHTT-EEEEEEEEEEE-HHHHHHTTSHHHHHHHHHHHHHHHHHHHSS--EEE.........EEEEE-GGGTTEEEEEEEEEE CS
  Inos-1-P_synth   1 GqTklksvLaellverglkvksivslNilGnnDgknlseeerfksKkisKssvvddivkanelly.....vdhevvikYvpylgDsKvaldeies 90 
                     GqTk+ks+L+++++++g+k++si+s+N+lGnnDg+nls+ e+f+sK+isKs+vvdd+v+an++ly     +dh+vvikY+p++gD+K+a+de+ +
      KKY23442.1 341 GQTKMKSALVDFMINAGIKLTSIASYNHLGNNDGMNLSSAEQFRSKEISKSNVVDDMVAANTVLYkkgehPDHTVVIKYMPAVGDDKRAMDEYFA 435
                     9********************************************************************************************** PP

                     EEGGGEEEEEEEEEEEEH. CS
  Inos-1-P_synth  91 eiflggkntielkleceDS 109
                     eiflgg++ i+++++ceDS
      KKY23442.1 436 EIFLGGHQMISMTNMCEDS 454
                     ******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 3442.81
//
Query:       KKY23443.1  [L=200]
Description: hypothetical protein UCRPC4_g02891 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-07   31.5   0.6    1.4e-07   31.2   0.6    1.5  1  DUF604    Protein of unknown function, DUF604


Domain annotation for each model (and alignments):
>> DUF604  Protein of unknown function, DUF604
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.6   7.9e-12   1.4e-07      21      95 ..       2      80 ..       1     183 [. 0.91

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 7.9e-12
      DUF604 21 plakaLakvldeClerY....pklygsddriqaCla.elGvpltkekGfHqvDlrgdllGlLaahplaplvslHHldave 95
                pl +++++v deC +      ++  + d+r+  C+      +l+ e G+HqvDl+gd +Gl  +   +pl s+HH +  +
  KKY23443.1  2 PLLRQMNEVYDECFDALditgERRLAGDRRVAHCIYkHTDAKLSVEYGLHQVDLHGDPSGLYESGRPQPL-SIHHWKSWS 80
                788899999999988752222345678*******9725789***********************999997.****88765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.34s 00:00:00.85 Elapsed: 00:00:00.57
# Mc/sec: 1049.56
//
Query:       KKY23444.1  [L=501]
Description: hypothetical protein UCRPC4_g02892 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1276  (0.0711696); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 3488.68
//
Query:       KKY23445.1  [L=338]
Description: putative rta1 domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-72  243.3   8.1    1.8e-72  243.3   8.1    1.5  2  RTA1      RTA1 like protein
  ------ inclusion threshold ------
       0.15   11.7   0.2       0.25   10.9   0.2    1.3  1  DUF4225   Protein of unknown function (DUF4225)


Domain annotation for each model (and alignments):
>> RTA1  RTA1 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.33   2.9e+03      27      49 ..      52      74 ..      32      82 .. 0.55
   2 !  243.3   8.1     2e-76   1.8e-72       1     204 [.      83     299 ..      83     301 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.33
        RTA1 27 lgpfiiqivllllaPafiaaaiY 49
                 +   + i+ llla  ++    Y
  KKY23445.1 52 GNVLYVAIFALLLAAQLFLGIRY 74
                44445555566666666555555 PP

  == domain 2  score: 243.3 bits;  conditional E-value: 2e-76
        RTA1   1 lilGcileviGYigRilsakn.tskaslgpfiiqivllllaPafiaaaiYmllgrlilllgeelsllrpklytkiFvvlDvvslllqaaGGglaasass 98 
                 ++ G+ileviGY++Ri +++n ++    gpfi+++++l+++Paf++a+iY++l+r+i+++ ++ ++l+p++yt++F+++D+v+l+lqa+GG++a++a++
  KKY23445.1  83 MFGGGILEVIGYVARIQMHYNpFP---DGPFIMYLCCLTIGPAFFTASIYLCLSRIITVYTPKAARLKPQVYTYLFITFDFVALVLQAVGGAIASTADT 178
                 5679*****************888...************************************************************************ PP

        RTA1  99 saeaklGeniiiaGlalQvvvlvvFlllaldFllrvr...............kskkfkkfllalyaavlliliRsiyRvvElaeGwdgylithEvyfyv 182
                 ++++++G ++++aG+a+Qv++l++F +l+ldF+lrvr               ++k+ k+f++al++a+++il+Rsi+R++El eG+dg+l+++Ev+f+v
  KKY23445.1 179 HTTSQQGIHLMVAGVAWQVASLFIFSILCLDFFLRVRrissdsynphfshlrSTKQHKYFIWALTLATFFILVRSIFRCAELEEGFDGDLANDEVTFMV 277
                 999*************************************************8899******************************************* PP

        RTA1 183 Ldallillavvllnvfhpgrlf 204
                 L++++i+la  ll+v+hpg++ 
  KKY23445.1 278 LEGAMIILANSLLTVWHPGWVW 299
                 *******************986 PP

>> DUF4225  Protein of unknown function (DUF4225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   2.8e-05      0.25      33      81 ..     147     193 ..     132     202 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.8e-05
     DUF4225  33 enkvikyvikgigvVagglqivaGvalvskasetvvgavaGalLilhGa 81 
                 + +v++y ++ + +Va +lq v+G+     ++ t   +  G++L++ G+
  KKY23445.1 147 KPQVYTYLFITFDFVALVLQAVGGAIAS--TADTHTTSQQGIHLMVAGV 193
                 55799*******************8776..999999999*******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 2089.10
//
Query:       KKY23446.1  [L=706]
Description: putative abc fatty acid [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.3e-101  337.3   0.8     1e-100  336.6   0.8    1.3  1  ABC_membrane_2   ABC transporter transmembrane region 2
    1.6e-19   70.8   0.0    8.4e-19   68.5   0.0    2.1  2  ABC_tran         ABC transporter
    4.7e-05   23.3   0.0    0.00017   21.5   0.0    2.0  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
      0.001   19.6   1.8     0.0074   16.8   1.4    2.5  2  AAA_23           AAA domain
  ------ inclusion threshold ------
      0.011   15.7   0.2      0.021   14.8   0.2    1.5  1  Reticulon        Reticulon
      0.015   15.0   0.0      0.044   13.5   0.0    1.7  1  AAA_29           P-loop containing region of AAA domain
      0.019   14.2   0.6      0.033   13.4   0.6    1.3  1  Glyco_transf_22  Alg9-like mannosyltransferase family
      0.024   14.1   0.0       0.14   11.6   0.1    2.1  2  SMC_N            RecF/RecN/SMC N terminal domain
      0.057   13.2   0.0        1.6    8.5   0.0    3.0  3  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.081   12.6   0.1        0.3   10.8   0.1    1.9  2  AAA_15           AAA ATPase domain
       0.14   12.1   0.0        0.3   11.0   0.0    1.5  1  Rad17            Rad17 P-loop domain


Domain annotation for each model (and alignments):
>> ABC_membrane_2  ABC transporter transmembrane region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.6   0.8  6.4e-104    1e-100       1     269 []      95     365 ..      95     365 .. 0.99

  Alignments for each domain:
  == domain 1  score: 336.6 bits;  conditional E-value: 6.4e-104
  ABC_membrane_2   1 LlkilipklkskeallllvlllllvlrtllsvlvaqldgklvkalvaknvraFvlsllkfallavpasfvnsalkYltqkLalafRkrLtkhlls 95 
                     Ll+i+ip++kske++lll ++++lv+rtlls++va+ldgk+v++lv+++ r+F+l l++++++avpa+f+ns+l+Y+++kL+l++R+rLtkh+++
      KKY23446.1  95 LLRIIIPSWKSKELRLLLSHSVFLVVRTLLSLYVAELDGKVVSSLVKGKGRDFLLGLVWWMMVAVPATFTNSMLEYHQCKLSLSYRNRLTKHIHK 189
                     89********************************************************************************************* PP

  ABC_membrane_2  96 eYlknr..tyYkvsnlderidnpDqritqDvekFtsslssLlsglvkpildvilftfiLwslsgtlgllllllyvllatvilriigpplgklvae 188
                     +Yl+     +Y +s+ld+ri+n+Dq+it Dv +F++sl++L+s+l+kp+ld+i++++ L +++g +gl+++ l v ++++++r+++pp+gk+va+
      KKY23446.1 190 KYLDSAnmSFYALSALDDRIKNADQLITVDVARFSNSLAELYSDLTKPVLDMIIYNYSLSKNVGGEGLFIMALLVQVSANVMRALTPPFGKYVAD 284
                     ***965449************************************************************************************** PP

  ABC_membrane_2 189 eeklegefRylhsrlitnaEeIAFyrGeevEkkqlqrrfkslidnlrrilsrrlrlgiieafvlkYlasilgyvlvalpif 269
                     e++legefR++h+rli+ +EeIA+y+Ge++Ek++l++ + +li++++ril+rr+++g++e+fv+kY++++lg+vl+++p+f
      KKY23446.1 285 EARLEGEFRSQHQRLIDFSEEIALYHGENAEKDTLDKGYFTLIKHVNRILRRRFYHGFMEDFVIKYFWGALGLVLCSVPVF 365
                     *******************************************************************************98 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       1.3   2.1e+03      83     124 ..      46      89 ..       4      92 .. 0.68
   2 !   68.5   0.0   5.1e-22   8.4e-19       2     137 .]     478     620 ..     477     620 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.3
                 TCHHHHHHHSTTGGTTCBGESTTS..GGS-HHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvkssp..ssLSgGqkqrvalarall 124
                  +i++a+++ +    ++  ++s+p   ++  G+k+rv++ r ++
  KKY23446.1  46 HRIHNAIAEQKAAAQRQAELRSRPktGEVESGKKKRVEINREFF 89 
                 55666666666666666666666666888899999999988776 PP

  == domain 2  score: 68.5 bits;  conditional E-value: 5.1e-22
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..............esdeeie 86 
                 k++s+++++g  + ivG+nG+GKS+L+++l gl     G++           ++ + ++i ++pq+p l +++ +r++              + d+e++
  KKY23446.1 478 KELSFSISPGDHLLIVGPNGCGKSSLFRILGGLWPVYGGSV-----------KKPSFENIFYIPQKPYLSRGT-LRDQiiypdslyefrakkATDAELK 564
                 789**************************************...........5677789***********999.99999*********99998889999 PP

                 HHHHHSTTGGTTCBGESTTS.....GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvkssp.....ssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++l+ l+++ + d++ + ++       +SgG +qr+a+ar++  kpk  +lDE+t+
  KKY23446.1 565 RILAILEIDSVVDRPGGWDAveewrDVFSGGLQQRIAMARLFYHKPKYAILDECTS 620
                 99999999996666654444555569****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         4   6.6e+03     169     206 ..     394     431 ..     382     460 .. 0.67
   2 !   21.5   0.0   1.1e-07   0.00017       3      26 ..     491     520 ..     490     567 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4
      AAA_21 169 lnifadyfgfakekrllqrlvrslklveielsdlgege 206
                  ++f++ ++ +ke++ l +++ +++   + l+d  +g+
  KKY23446.1 394 SDAFGRIMFSYKEITELAGYTARVSSLLDVLDDVSAGS 431
                 56677777777777777776666666666555554443 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 1.1e-07
      AAA_21   3 vliGpNgsGKSnLLdaldllarl......d 26 
                 +++GpNg+GKS+L+++l +l+ +       
  KKY23446.1 491 LIVGPNGCGKSSLFRILGGLWPVyggsvkK 520
                 69*****************97544333332 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       7.1   1.2e+04      11      28 ..     295     313 ..     290     315 .. 0.73
   2 !   16.8   1.4   4.5e-06    0.0074      21      47 ..     489     517 ..     475     705 .. 0.49

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 7.1
      AAA_23  11 rdqe.idFskgltlItGpN 28 
                 ++q  idFs  + l +G+N
  KKY23446.1 295 QHQRlIDFSEEIALYHGEN 313
                 333369***9999999999 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 4.5e-06
      AAA_23  21 ltlItGpNGaGKTTildAik..laLyget 47 
                   lI+GpNG+GK+++++ +   +  yg +
  KKY23446.1 489 HLLIVGPNGCGKSSLFRILGglWPVYGGS 517
                 449*************9886444455533 PP

>> Reticulon  Reticulon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.2   1.3e-05     0.021      12     126 ..      12     139 ..       9     165 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.3e-05
   Reticulon  12 ksgivlgglllllllfellgysllslvsklllllllvlflwa........eyagllnkskp..................pepelelseesvreladsll 84 
                 +s++ l++++++l+l +        +v + ++l+l+v ++++        +      +                     +++++e+++e +r+l++ l+
  KKY23446.1  12 RSIKQLISATTSLYLKNRK------VVGRGVYLALFVALAHRihnaiaeqK-----AA--AqrqaelrsrpktgevesgKKKRVEINREFFRSLFKLLR 97 
                 5566666666666555444......44444555555555555333433331.....22..122344555655566665566****************** PP

   Reticulon  85 ellnkalselrrlalgedlklflkvalllyilsilgslfsll 126
                   + ++ s+  rl+l ++++l ++++l+ly++ + g+++s l
  KKY23446.1  98 IIIPSWKSKELRLLLSHSVFLVVRTLLSLYVAELDGKVVSSL 139
                 ********************************9999888765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.7e-05     0.044      16      39 ..     481     504 ..     476     505 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.7e-05
      AAA_29  16 tieidlkgatlltGpsGsGKSTll 39 
                 +++i++ +  l++Gp+G GKS+l+
  KKY23446.1 481 SFSISPGDHLLIVGPNGCGKSSLF 504
                 578888889************996 PP

>> Glyco_transf_22  Alg9-like mannosyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.6     2e-05     0.033      53     174 ..      89     202 ..      83     221 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2e-05
  Glyco_transf_22  53 iRSylfllllalpyrllaelvadskiavlyapRlllallsalidyylfravcrkygseiakialllslsswglfvfstrtfsnsl.emlltsia 145
                       RS + ll + +p +  +el    ++ v++++R ll+l  a +d ++++++ +  g+       +l+++ w ++v+  +tf+ns+ e   + + 
       KKY23446.1  89 FRSLFKLLRIIIPSWKSKELRLLLSHSVFLVVRTLLSLYVAELDGKVVSSLVKGKGRD------FLLGLVWWMMVAVPATFTNSMlEYHQCKLS 176
                      599999*******************************************888865555......8888999999999******96377788888 PP

  Glyco_transf_22 146 lyllsellsrenksssnekylvavlliav 174
                      l++ ++ l +++++++ ++  +  ++ a+
       KKY23446.1 177 LSYRNR-LTKHIHKKYLDSANM--SFYAL 202
                      888887.667777777544444..33343 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   8.4e-05      0.14      26      41 ..     489     504 ..     478     508 .. 0.84
   2 ?   -1.3   0.0      0.74   1.2e+03     108     151 ..     548     606 ..     538     648 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.4e-05
                 EEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnll 41 
                 +  ivGpNG+GKs+l+
  KKY23446.1 489 HLLIVGPNGCGKSSLF 504
                 557***********97 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.74
                 EEEEEETTEEE-HHHHHHHHHCTT-STT...............CS-HHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxx RF
       SMC_N 108 eseykingkevtkkevsellesagiske...............lLSgGektLvalaLlf 151
                 +s y++  k++t +e++++l+  +i++                ++SgG ++ +a+a lf
  KKY23446.1 548 DSLYEFRAKKATDAELKRILAILEIDSVvdrpggwdaveewrdVFSGGLQQRIAMARLF 606
                 67899999999999999999999999888888888888888888888877777777665 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.85   1.4e+03      75     118 ..     202     244 ..     198     252 .. 0.85
   2 ?   -0.0   0.0      0.41   6.6e+02     108     140 ..     299     331 ..     294     338 .. 0.87
   3 ?    8.5   0.0   0.00098       1.6      31      53 ..     485     507 ..     460     514 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.85
      RuvB_N  75 laalltnleekdvlfideihrlsraveevlysamedfrldivig 118
                 l+al  ++++ d l   ++ r+s+++ e lys +    ld++i 
  KKY23446.1 202 LSALDDRIKNADQLITVDVARFSNSLAE-LYSDLTKPVLDMIIY 244
                 677788899999999999*****99999.799999999999986 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.41
      RuvB_N 108 medfrldivigkGpsarsikldlpkftlvgatt 140
                 + df+ +i + +G++a++ +ld   ftl+    
  KKY23446.1 299 LIDFSEEIALYHGENAEKDTLDKGYFTLIKHVN 331
                 5699999*********************97665 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00098
      RuvB_N  31 ealdhvllyGpPGlGkttlakii 53 
                 ++ dh+l++Gp G Gk++l +i+
  KKY23446.1 485 SPGDHLLIVGPNGCGKSSLFRIL 507
                 567****************9987 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.97   1.6e+03     112     164 ..     185     234 ..      78     259 .. 0.76
   2 ?   10.8   0.1   0.00018       0.3      25      43 ..     489     507 ..     477     510 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.97
      AAA_15 112 esdlkktikdkklklkknelsdekisvekkkskkelpkekeeklekekeelki 164
                 +  +kk++ + ++ +++    d++i++ ++  +++   ++++ +e      ++
  KKY23446.1 185 KHIHKKYLDSANMSFYALSALDDRIKNADQLITVDVARFSNSLAE---LYSDL 234
                 445677888888888888888888877777666665555544443...33344 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00018
      AAA_15  25 ltvliGkNnsGKSsileal 43 
                   +++G+N++GKSs+ ++l
  KKY23446.1 489 HLLIVGPNGCGKSSLFRIL 507
                 679***********98887 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00019       0.3      47      65 ..     489     507 ..     478     514 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00019
       Rad17  47 iLLisGPsGCgkstvvkvL 65 
                  LLi GP GCgks   ++L
  KKY23446.1 489 HLLIVGPNGCGKSSLFRIL 507
                 59************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.49
# Mc/sec: 4370.26
//
Query:       KKY23447.1  [L=390]
Description: putative isocitrate nad-dependent [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-99  333.2   0.0    2.2e-99  332.9   0.0    1.0  1  Iso_dh      Isocitrate/isopropylmalate dehydrogenase
  ------ inclusion threshold ------
       0.11   12.4   0.0       0.28   11.0   0.0    1.7  1  Phage_30_3  Bacteriophage protein GP30.3


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  332.9   0.0  2.4e-103   2.2e-99       1     345 [.      61     383 ..      61     386 .. 0.94

  Alignments for each domain:
  == domain 1  score: 332.9 bits;  conditional E-value: 2.4e-103
                 EEEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE---THHHHHHHSSSS-HHHHHHHHHSSEEEEEE---CSSSSSSHHHHHHHHHHHTTEEEEEE CS
      Iso_dh   1 kiallegdgiGpevveaalkvlkaakekaglelefeevdvGgaaidetgeplpeetleaikeadvvllgavgtpkekevrpengLlaLrkeldlfanlr 99 
                 +++l+egdgiGpe+++a+++++ aak  a+  +++e vdv  +  d  ++ +p+e++++++++ v+l+g++ tp++k++ + n  l+Lr++++lfan+r
  KKY23447.1  61 TVTLIEGDGIGPEISQAVKDIFAAAK--AP--IKWEPVDVTPQLKDG-KTVIPDEAIASVQKNYVALKGPLATPVGKGHVSLN--LTLRRTFNLFANVR 152
                 589*******************9999..55..99******9998888.9**********************************..88************ PP

                 EEE-BCCTTCCSSBTHHHHCT-EEEEEEE-SSCGGCSSEEEEETTG.GGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTTHHHH.HHH CS
      Iso_dh 100 pvkvfeklkvksplkrevveevdlvivReltggiYfgeekekkgsifteevavdtklyseeeieriaraafelAlkrgkkkvtlvdKanvlksse.lwr 197
                 p+k++   ++k+p+ +     vd v++Re+t+g Y+g+e++  +      v++++kl+++e+ er+ r+af++A++ gkkkv +v+Ka+++k+s+ l+ 
  KKY23447.1 153 PCKSI--AGYKTPYDN-----VDTVLIRENTEGEYSGIEHVVVDG-----VVQSIKLITREACERVLRFAFQYAMETGKKKVRAVHKATIMKMSDgLFL 239
                 *****..899999996.....9*********************97.....8********************************************6666 PP

                 HHHHHHHCCTTTTSEEEEEEHHHHHHHHHHSGGGGS..EEEE-HHHHHHHHHHHHHHTTSGCC-EEEEEETSS-EEEEESS---CCCTTSS-S-THHHH CS
      Iso_dh 198 kiveevaeeeypdielehqlvDsaamqlvkspkqfd..VivtkNlfGDilSDeaaalvGslGllpSaslgekkvaifEavHGsapdiagkdkaNpiavi 294
                 +i+ e+ + eyp+ie++ +l+D++++++ ++p  ++  V+v++Nl+GDilSD+ a l+G+lGl+pS ++g ++  ifEavHGsapdiagk+ aNp+a +
  KKY23447.1 240 NIARELSK-EYPEIEFDAELLDNTCLKMTTDPVPYNdkVLVMPNLYGDILSDMSAGLIGGLGLTPSGNIG-DECSIFEAVHGSAPDIAGKGLANPTALL 336
                 66666666.***********************555449********************************.79************************** PP

                 HHHHHHHHHTTT-HHHHHHHHHHHHHHHHH.TSCCHHHCTTSTCCCHHHHHH CS
      Iso_dh 295 lSaalmLryslgleeaAdkiekAvekvlea.givTkDlageaakevstsefg 345
                 lS  +mLr+ +gl+e A++iekA  ++l + + +T+Dl+g+a    +t+e+ 
  KKY23447.1 337 LSSIMMLRH-MGLNEYATNIEKAAFDTLSEgKALTGDLGGKA----KTHEYA 383
                 *********.********************8889******99....777765 PP

>> Phage_30_3  Bacteriophage protein GP30.3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.1e-05      0.28      18      67 ..     181     230 ..     179     253 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.1e-05
  Phage_30_3  18 dGvecasleGflqalkfknpemqrricklsGkaakaaGrkknrwqdtqtl 67 
                  G+e   ++G++q++k+   e   r+++++ + a ++G+kk r+ ++ t+
  KKY23447.1 181 SGIEHVVVDGVVQSIKLITREACERVLRFAFQYAMETGKKKVRAVHKATI 230
                 599999************************************99888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.54
# Mc/sec: 2155.98
//
Query:       KKY23448.1  [L=1074]
Description: putative exocyst complex component sec5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-37  128.9   0.4    1.3e-36  126.2   0.0    2.6  3  Sec5             Exocyst complex component Sec5
    1.3e-05   25.2   1.9    0.00014   21.9   0.1    3.6  4  Vps51            Vps51/Vps67
  ------ inclusion threshold ------
      0.049   14.1   0.1         13    6.3   0.0    2.7  2  Pullulanase_Ins  Pullulanase Ins domain


Domain annotation for each model (and alignments):
>> Sec5  Exocyst complex component Sec5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.2   0.0   2.2e-40   1.3e-36       2     190 .]     150     398 ..     149     398 .. 0.95
   2 ?   -1.2   0.0      0.26   1.6e+03       7      50 ..     828     872 ..     823     890 .. 0.59
   3 ?   -2.5   0.1      0.65   3.9e+03     125     160 ..     968    1004 ..     922    1013 .. 0.67

  Alignments for each domain:
  == domain 1  score: 126.2 bits;  conditional E-value: 2.2e-40
        Sec5   2 eelkslvksnftkfvkvkdtldqiykefseskteaqed...........................................slveeLeeslneairktt 57 
                   lk lv+snf++fv++k+t+d++y e++++  +++ +                                            +v  ++  l e+++k++
  KKY23448.1 150 ASLKVLVESNFERFVRAKATIDNVYTEMRSQGAQNEPQsrpqsrhvsrqsghyrnfssgsfggsapskpqlrknalvkeseFGVIGIKAPLLEITQKAE 248
                 579*************************9888876666789999************************************999999************* PP

        Sec5  58 llfkpvlenkekadklraaleviernkflFnLPksLkesiakgdydklindYkkakslfestrqslv..........eedkkqvkvfkkvwsevekiie 146
                  +  p le +e++d+l+aa++ i++ + + +L  +L + i+++dy+ +++ Y++a++  ++ ++ ++          +++++q+ v  ++w +ve  i+
  KKY23448.1 249 DVWGPALEGREREDHLKAATQAIDQDRSIYELGTTLAKVIKQRDYEAVVDHYNNARRHSNNAKALAEkaatgqqqisDQQIHQILVTGRMWIDVEHQIK 347
                 ****************************************************9999999999777779999999999999******************* PP

        Sec5 147 eyrkklwekLleld.......esqeeflkliskLleLeveedPiwdflesq 190
                  ++++lw+kL++l+        + ee+++li  LleL+v+e+Piw++l+s+
  KKY23448.1 348 VLKRELWKKLSSLHsssptdnVNAEEHMELIGVLLELGVDENPIWVWLRSR 398
                 *******************99999************************985 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.26
        Sec5   7 lvksnft.kfvkvkdtldqiykefseskteaqedslveeLeesln 50 
                 l ++nf+ k  +  +t+ ++++++++   ++    +v++L++ + 
  KKY23448.1 828 LFETNFSvKLTDESKTIRDVLSQIDSRLFQSYVRPTVSKLNDIIR 872
                 555555423444555666666666666666666666666666555 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.65
        Sec5  125 eedkkqvkvfkkvwsevekiie.eyrkklwekLleld 160 
                   +++k +++ ++++ e + +++ + r+ l+++L e++
  KKY23448.1  968 YSSEKASQIQSQIYLELDRRTDnNARQALQQELPEMR 1004
                  2455667777777777777775246777777777766 PP

>> Vps51  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   2.3e-08   0.00014       1      69 [.     111     179 ..     111     197 .. 0.94
   2 ?   -1.6   0.0      0.51     3e+03      13      37 ..     511     535 ..     504     536 .. 0.86
   3 ?   -1.3   0.0      0.39   2.3e+03      26      47 ..     960     981 ..     937     983 .. 0.80
   4 ?   -3.2   0.0       1.5   9.1e+03      59      73 ..     999    1013 ..     995    1016 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.3e-08
       Vps51   1 ldspdfdaeayvrellakstlkellkveasllseiraldselkalVydnYskLisasdtIrkmksemdk 69 
                 l+s  f++  +++++ + +t + ll+    l+++i ++ ++lk lV  n ++++ a  tI +  +em++
  KKY23448.1 111 LSSTTFSPAIFLSQVHSDATTDSLLQGLDYLTRSIDQKSASLKVLVESNFERFVRAKATIDNVYTEMRS 179
                 57889*************************************************************976 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.51
       Vps51  13 rellakstlkellkveasllseira 37 
                 +++l+ +++k+l+k   +l+  ir+
  KKY23448.1 511 HHKLSDAGIKDLQKGVTDLVTLIRE 535
                 4679999*******99999999986 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.39
       Vps51  26 kveasllseiraldselkalVy 47 
                  + ++l++   ++ s++++++y
  KKY23448.1 960 FIAQTLTQYSSEKASQIQSQIY 981
                 4567888999999999999998 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 1.5
       Vps51   59 tIrkmksemdkldqk 73  
                  ++ +m+++++kl+++
  KKY23448.1  999 ELPEMRGSLKKLRES 1013
                  566777777777664 PP

>> Pullulanase_Ins  Pullulanase Ins domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0022        13      30      69 ..     157     196 ..     151     201 .. 0.88
   2 ?    4.8   0.0    0.0064        38      38      69 ..     839     872 ..     829     876 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0022
  Pullulanase_Ins  30 nseFaeyCsssktiaevleelkkdDskenpqVqeLnrlva 69 
                      +s+F ++ + + ti +v+ e++++  +++pq +   r+v+
       KKY23448.1 157 ESNFERFVRAKATIDNVYTEMRSQGAQNEPQSRPQSRHVS 196
                      699***************************9887777776 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0064
  Pullulanase_Ins  38 sssktiaevleelkkd..DskenpqVqeLnrlva 69 
                      ++skti++vl+++ +    s   p+V +Ln++++
       KKY23448.1 839 DESKTIRDVLSQIDSRlfQSYVRPTVSKLNDIIR 872
                      6799********99873367779********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1074 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1174  (0.0654805); expected 358.6 (0.02)
Passed bias filter:                      722  (0.04027); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.55
# Mc/sec: 5853.12
//
Query:       KKY23449.1  [L=222]
Description: putative atp synthase subunit 5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-46  156.8   0.6    7.4e-46  156.4   0.6    1.2  1  OSCP      ATP synthase delta (OSCP) subunit
  ------ inclusion threshold ------
       0.15   11.9   0.0       0.63    9.9   0.0    1.9  2  DUF2185   Protein of unknown function (DUF2185)


Domain annotation for each model (and alignments):
>> OSCP  ATP synthase delta (OSCP) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.4   0.6   8.2e-50   7.4e-46       1     172 []      42     218 ..      42     218 .. 0.94

  Alignments for each domain:
  == domain 1  score: 156.4 bits;  conditional E-value: 8.2e-50
        OSCP   1 iarrYAkAlfelAkekgaleeveeelealeavlaedkklaellsnpavsaeekkdlleelfke...klseavknflkllaenkRlalLpeiaeefeell 96 
                 i+++YA+Al+++A ++++l+++++ +++l+a++++d+klae+l+ p++sa++k+++++el k      + +vknfl++laen+Rl++L+ ++e+f +l+
  KKY23449.1  42 IDGTYANALYTAAAKSSTLDTTATAISSLSAIFKKDPKLAEILHAPTLSAADKSSIVAELEKHiqgGDKATVKNFLNTLAENNRLGVLEGVCEKFAQLM 140
                 6789*******************************************************998876555779**************************** PP

        OSCP  97 aeargiveaeVtsavpLtdeqlekleaal..akklgkkkvkleekvdpsliGGvvvkvgdkviDgSvkgkLeklkeqL 172
                  ++rg++e+++t+a++L+   l++le+a+  ++  + kk+k+ +kv+p+++GG+vv++gd++iD Sv++k++++++ L
  KKY23449.1 141 GAHRGEIEVTITTAAKLEPRLLSRLESAVskSEYASGKKLKVITKVNPEIVGGLVVEIGDRTIDFSVSSKISRMNKVL 218
                 *****************************6634445558***********************************9865 PP

>> DUF2185  Protein of unknown function (DUF2185)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0     7e-05      0.63      44      75 ..      61      92 ..      54      97 .. 0.85
   2 ?   -1.2   0.0       0.2   1.8e+03      51      71 ..     178     198 ..     153     203 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 7e-05
     DUF2185 44 dkenfgivdlntilniDpsiielleapigsaf 75
                d++ ++i +l++i+++Dp+++e+l+ap  sa 
  KKY23449.1 61 DTTATAISSLSAIFKKDPKLAEILHAPTLSAA 92
                56678899*******************87765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.2
     DUF2185  51 vdlntilniDpsiielleapi 71 
                  +l+ i++++p+i+  l  +i
  KKY23449.1 178 KKLKVITKVNPEIVGGLVVEI 198
                 468888889988887666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1412.72
//
Query:       KKY23450.1  [L=396]
Description: hypothetical protein UCRPC4_g02898 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0052   16.2   4.5        0.7    9.2   0.7    3.1  3  ApoL            Apolipoprotein L
     0.0073   16.2  13.5      0.055   13.3   3.6    3.3  3  Apolipoprotein  Apolipoprotein A1/A4/E domain
  ------ inclusion threshold ------
       0.13   11.6   0.8       0.29   10.6   0.1    1.9  2  SEO_C           Sieve element occlusion C-terminus
       0.14   12.7   1.5         51    4.5   0.1    4.1  4  HisKA_3         Histidine kinase
       0.43   11.0   2.8         30    5.0   0.0    3.6  4  Uteroglobin     Uteroglobin family
       0.48   10.7   9.5        2.6    8.4   0.2    4.1  3  Phasin_2        Phasin protein
       0.58    8.0   6.7       0.93    7.4   2.1    2.5  2  Prominin        Prominin
        0.6   10.2   7.5        1.1    9.3   0.6    2.8  2  YolD            YolD-like protein
        0.8    9.6   6.7        4.9    7.1   1.4    3.6  4  CHASE3          CHASE3 domain
       0.88    9.5   3.1         25    4.8   0.1    4.2  4  Elf4            Early Flowering 4 domain
        1.5    9.6   7.5         14    6.5   2.6    4.1  3  CarD_CdnL_TRCF  CarD-like/TRCF domain
        2.4    8.8   0.0        2.4    8.8   0.0    5.5  6  DUF883          Bacterial protein of unknown function (DUF883
        3.9    7.0  15.1      0.095   12.3   2.8    3.2  2  DUF4795         Domain of unknown function (DUF4795)


Domain annotation for each model (and alignments):
>> ApoL  Apolipoprotein L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1         1   1.4e+03     208     242 ..       4      38 ..       2      92 .. 0.62
   2 !    7.1   0.0    0.0022       3.1      61      88 ..     184     211 ..     142     214 .. 0.89
   3 !    9.2   0.7    0.0005       0.7      14      80 ..     220     288 ..     218     313 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1
        ApoL 208 Alrlakanprlvakakrllttgrisaqsakqvqka 242
                   r+a+a p   +  +r+  t + saq ++   ++
  KKY23450.1   4 SARTARARPLRQNCSRRFQSTSSQSAQDSTGGGAH 38 
                 56667777777766777776666666655443333 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0022
        ApoL  61 erFLkeFPqvkqeLeerIkkLralAdev 88 
                 ++ +++ P +k+++  +I +Lr+lAd++
  KKY23450.1 184 QQVIENHPMLKEKVGGNIDQLRSLADKL 211
                 5667899*******************86 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0005
        ApoL  14 deaWerf..vaeaelsrdeadaLreaLkeleellaiedkdmlqkdqqererFLkeFPqvkqeLeerIkk 80 
                 d++We++  + +  l+    d +r+ +++ +++++   ++  ++  qe + FL++ Pqvk+ Le++ + 
  KKY23450.1 220 DQTWEEVqdILKGGLDASTLDRIRQLVQKKTSEVQKLGEKAWEQSLQEAKPFLDKNPQVKELLEKNRSS 288
                 4788888666788899999999999999988888877777778888999***************98665 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.4   3.3e+03     107     132 ..      65      89 ..       5     102 .. 0.56
   2 !   13.3   3.6     4e-05     0.055      85     173 ..     174     259 ..     118     286 .. 0.63
   3 ?    4.2   4.2     0.025        35      53     141 ..     313     388 ..     262     395 .. 0.45

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.4
                     HHHHHHHHHHHHHCHHHHHHHHHHHH CS
  Apolipoprotein 107 rlerhvealkarlapyveelrqklae 132
                     +++++v+++k++ + y e++ +k++e
      KKY23450.1  65 GAKTAVSTVKQT-KDYYESTINKVKE 89 
                     445555554442.2344444444444 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 4e-05
                     HHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSHHHHHS CS
  Apolipoprotein  85 rlaadaeelqeqlavyaeelrerlerhvealkarlapyveelrqklaerleelkeslaphaeeveerlssrveelrekleeqaeelrer 173
                     r+a  a ++ +q+ ++   l+e++  ++++l++  + +  e++qk ++ +ee+++ l+  ++++     +r+++l +k + ++++l e+
      KKY23450.1 174 RIASLAGDASQQVIENHPMLKEKVGGNIDQLRSLADKLGPEAKQKFDQTWEEVQDILKGGLDAST---LDRIRQLVQKKTSEVQKLGEK 259
                     44444444455555555558888888888888888888888888888888888888888888877...333333333333333333332 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.025
                     CCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-- CS
  Apolipoprotein  53 lepyrdevqeqlgqnleelrqrlapyteelrerlaadaeelqeqlavyaeelrerlerhvealkarlapyveelrqklaerleelkesl 141
                     le+y+ e+ ++++++  +l   l+             +      l ++ e+++e  ++h ++     ++ ++e+ q l ++lee k+ +
      KKY23450.1 313 LESYIKEATQKIKDSSSGLEGYLD-------------MLPGGSELLPKFEQFQELSKKHSKDAERLAKETIDEISQVLSKKLEEGKKLM 388
                     222222222222222222222221.............1122223333333344444444444444444444444444444444444433 PP

>> SEO_C  Sieve element occlusion C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00021      0.29     132     177 ..     154     199 ..     130     231 .. 0.80
   2 ?   -2.3   0.1       1.8   2.5e+03     160     191 ..     293     324 ..     240     336 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00021
       SEO_C 132 klLsydgsdegWavlskgseevvkakgeevlktlkeydewkenvek 177
                 k Ls+++ +e W vlsk+  +++   g+  +++++++   ke+v  
  KKY23450.1 154 KGLSVESASEAWQVLSKALGRIASLAGDASQQVIENHPMLKEKVGG 199
                 56999*99******************************99999864 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.8
       SEO_C 160 evlktlkeydewkenvekkgfvealkdalekl 191
                 +++k +++ ++  ++ + +g+ + +k+a++k+
  KKY23450.1 293 NITKLFQQLKQAATSGNAQGLESYIKEATQKI 324
                 24444444444444445555555555555554 PP

>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       7.3     1e+04      43      59 ..     135     151 ..     131     153 .. 0.78
   2 ?    3.4   0.0     0.081   1.1e+02      27      66 ..     175     214 ..     164     217 .. 0.79
   3 ?   -0.4   0.0       1.2   1.7e+03      40      58 ..     237     255 ..     222     259 .. 0.85
   4 ?    4.5   0.1     0.037        51      27      60 ..     355     388 ..     351     394 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 7.3
                 HHHHHHHHHHHHHHHHH CS
     HisKA_3  43 reieelarealqevRrl 59 
                 +++ + ++e+++e++++
  KKY23450.1 135 ADVDKIVSETYKELKQV 151
                 56788999999999876 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.081
                 HHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH CS
     HisKA_3  27 akrllekdpekaaeqlreieelarealqevRrllhnLrpa 66 
                 ++ l+ ++ +++ e   +++e + ++++++R l  +L p+
  KKY23450.1 175 IASLAGDASQQVIENHPMLKEKVGGNIDQLRSLADKLGPE 214
                 4444566667999999999***************999886 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHHHHHH CS
     HisKA_3  40 eqlreieelarealqevRr 58 
                  +l++i++l+++  +ev +
  KKY23450.1 237 STLDRIRQLVQKKTSEVQK 255
                 6789999999998888865 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.037
                 HHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HisKA_3  27 akrllekdpekaaeqlreieelarealqevRrll 60 
                  k++ ++++  a+e+++ei + +++ l+e ++l 
  KKY23450.1 355 SKKHSKDAERLAKETIDEISQVLSKKLEEGKKLM 388
                 56666666679999*********99999988776 PP

>> Uteroglobin  Uteroglobin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       6.2   8.6e+03      58      67 ..      69      78 ..      65      98 .. 0.59
   2 ?    3.6   0.0      0.06        83      55      85 ..     141     172 ..     136     175 .. 0.85
   3 ?    5.0   0.0     0.022        30      58      84 ..     200     226 ..     193     229 .. 0.88
   4 ?   -0.9   0.1       1.6   2.2e+03      60      80 ..     349     369 ..     301     394 .. 0.54

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 6.2
                 HHHHHHHHHT CS
  Uteroglobin 58 alaelKqcvd 67
                 a+ ++Kq  d
   KKY23450.1 69 AVSTVKQTKD 78
                 5555555433 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.06
                  HHHHHHHHHHHHT.TS-HHHHHHHHHHHHHHH CS
  Uteroglobin  55 aeealaelKqcvd.klsnetkenvakllekil 85 
                  + e  +elKq +d  ls e  +++ ++l k l
   KKY23450.1 141 VSETYKELKQVTDkGLSVESASEAWQVLSKAL 172
                  678899*******99****9999999998865 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.022
                  HHHHHHHHHTTS-HHHHHHHHHHHHHH CS
  Uteroglobin  58 alaelKqcvdklsnetkenvaklleki 84 
                  ++++l++  dkl +e k+++ +++e++
   KKY23450.1 200 NIDQLRSLADKLGPEAKQKFDQTWEEV 226
                  789*******************99976 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.6
                  HHHHHHHTTS-HHHHHHHHHH CS
  Uteroglobin  60 aelKqcvdklsnetkenvakl 80 
                  +++++   k s+     ++++
   KKY23450.1 349 EQFQELSKKHSKDAERLAKET 369
                  333333333333333333333 PP

>> Phasin_2  Phasin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.13   1.9e+02      11      42 ..     158     189 ..     146     197 .. 0.86
   2 ?    2.8   0.8       0.1   1.4e+02      18      82 ..     243     305 ..     224     311 .. 0.62
   3 ?    8.4   0.2    0.0019       2.6      12      52 ..     349     389 ..     347     394 .. 0.64

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.13
    Phasin_2  11 lealealaslalegaeklaelqleaaraslee 42 
                 +e + ++ +++ +++ ++a+l+ +a+++ +e+
  KKY23450.1 158 VESASEAWQVLSKALGRIASLAGDASQQVIEN 189
                 67788889999999999999999999999886 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.1
    Phasin_2  18 aslalegaeklaelqleaarasleeslaaakallsakdpqell.elqselaqpalekavayarkla 82 
                  +l+++   ++ +l  +a+++sl+e+  ++ +  ++k   ell +  s+l+  +++k++++ +++a
  KKY23450.1 243 RQLVQKKTSEVQKLGEKAWEQSLQEAKPFLDKNPQVK---ELLeKNRSSLLSGNITKLFQQLKQAA 305
                 3444444444444444566666666666666666666...77734457777777888888877765 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0019
    Phasin_2  12 ealealaslalegaeklaelqleaarasleeslaaakalls 52 
                 e +++l+++  + ae+la++ ++ +++ l++ l+  k+l++
  KKY23450.1 349 EQFQELSKKHSKDAERLAKETIDEISQVLSKKLEEGKKLMD 389
                 66666666666666666666666666666666666666654 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   2.1   0.00067      0.93     631     742 ..     202     324 ..     183     338 .. 0.69
   2 ?    2.3   0.1     0.023        32     170     208 ..     347     385 ..     333     395 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00067
    Prominin 631 ekleelanelsngkknlkqslkneaqdlra..iqqelvlplessvkklkksvkklde........ensdlqesikkllaaver.aenflkkngseiinn 718
                 ++l++la++l ++ k+   ++++e+qd+ +  +++ + ++++++v+k +++v+kl e        e++ + ++  ++ + +e+     l  n+++  ++
  KKY23450.1 202 DQLRSLADKLGPEAKQKFDQTWEEVQDILKggLDASTLDRIRQLVQKKTSEVQKLGEkaweqslqEAKPFLDKNPQVKELLEKnRSSLLSGNITKLFQQ 300
                 7999******999888888899999998655589999******************99664444443333433333333333220234555566666666 PP

    Prominin 719 eskklldrileqfeeYidwvieev 742
                 +++  ++   + +e+Yi+ + +++
  KKY23450.1 301 LKQAATSGNAQGLESYIKEATQKI 324
                 666666666666666666666555 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.023
    Prominin 170 gleesketvkrgledlrtflkdvpqhidhvlvqnyeele 208
                 ++e+ +e+ k+ ++d+  + k++ ++i +vl +  ee +
  KKY23450.1 347 KFEQFQELSKKHSKDAERLAKETIDEISQVLSKKLEEGK 385
                 6788899999999*****************999776665 PP

>> YolD  YolD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.6   0.00081       1.1       3      52 ..     213     262 ..     213     281 .. 0.91
   2 ?    3.5   1.2     0.054        75       8      45 ..     350     386 ..     343     388 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00081
        YolD   3 PEhvealrelkeeqkkvekpeLDeqqleeineklqealeeeqpvtityye 52 
                 PE +++  + +ee + + k  LD  +l++i +++q++ +e q++  + +e
  KKY23450.1 213 PEAKQKFDQTWEEVQDILKGGLDASTLDRIRQLVQKKTSEVQKLGEKAWE 262
                 999**********************************9998887666665 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.054
        YolD   8 alrelkeeqkkvekpeLDeqqleeineklqealeeeqp 45 
                 + +el ++ + ++   L +++++ei+++l+++lee+++
  KKY23450.1 350 QFQELSKKHS-KDAERLAKETIDEISQVLSKKLEEGKK 386
                 4444443333.455689999999********9999876 PP

>> CHASE3  CHASE3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.7   2.4e+03      43      78 ..      72     104 ..      61     109 .. 0.54
   2 ?    6.5   0.6    0.0053       7.2      47     131 ..     215     256 ..     168     263 .. 0.61
   3 ?    7.1   1.4    0.0035       4.9      46     103 ..     214     270 ..     213     307 .. 0.73
   4 ?    2.7   0.1     0.082   1.1e+02      17      85 ..     319     383 ..     306     395 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.7
      CHASE3  43 pyeqaraeiqealeelreltadnpeqqerldrleal 78 
                   +q ++ ++ ++++++   ++ pe +e ld l+++
  KKY23450.1  72 TVKQTKDYYESTINKVK---ENAPEPNEALDYLRKQ 104
                 44444444555555555...3335555555555554 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0053
      CHASE3  47 araeiqealeelreltadnpeqqerldrlealieqklaeleetialrreggleaalalvrsdegkelmdeiraliaemrdeerrl 131
                 a+++++                                           +++e+ +++++ +    + d+ir+l+++  +e ++l
  KKY23450.1 215 AKQKFD-------------------------------------------QTWEEVQDILKGGLDASTLDRIRQLVQKKTSEVQKL 256
                 333333...........................................455566666666666666666666666655555544 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0035
      CHASE3  46 qaraeiqealeelreltadnpeqqerldrlealieqklaeleetialrreggleaala 103
                 +a++++++++ee+++++++    ++ ldr+++l+++k +e++++ + + e++l++a+ 
  KKY23450.1 214 EAKQKFDQTWEEVQDILKG-GLDASTLDRIRQLVQKKTSEVQKLGEKAWEQSLQEAKP 270
                 5889999999999999965.56777899999999999999999877777766665543 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.082
      CHASE3  17 rllsalvdaEtgqRGYl..ltgdeefLepyeqaraeiqealeelreltadnpeqqerldrlealieqklae 85 
                 +  + ++d  +g+ GYl  l g +e+L  +eq ++  +++ +++++l +      e +d++++   +kl+e
  KKY23450.1 319 EATQKIKDSSSGLEGYLdmLPGGSELLPKFEQFQELSKKHSKDAERLAK------ETIDEISQVLSKKLEE 383
                 5555666666666666555666666666666666666666666665553......2344444444444444 PP

>> Elf4  Early Flowering 4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.53   7.4e+02      40      67 ..     119     148 ..     116     164 .. 0.71
   2 ?   -1.5   0.0       1.7   2.4e+03       4      21 ..     162     179 ..     157     209 .. 0.63
   3 ?    0.8   0.1      0.34   4.6e+02       5      22 ..     214     231 ..     210     255 .. 0.77
   4 ?    4.8   0.1     0.018        25      10      45 ..     261     296 ..     254     303 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.53
        Elf4  40 pdnlsrnvaLirelNg.NIskvvs.lYsdL 67 
                  dn  +++ Lire  g  + k+vs  Y++L
  KKY23450.1 119 VDNTFKDIDLIREKHGaDVDKIVSeTYKEL 148
                 688999999999965425766553256666 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.7
        Elf4   4 akvlqtlsksfrqvqsvL 21 
                 ++++q lsk + ++ s+ 
  KKY23450.1 162 SEAWQVLSKALGRIASLA 179
                 567777777777766653 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.34
        Elf4   5 kvlqtlsksfrqvqsvLd 22 
                 ++ q++++++++vq++L 
  KKY23450.1 214 EAKQKFDQTWEEVQDILK 231
                 567889999999999884 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.018
        Elf4  10 lsksfrqvqsvLdqNrlLIqevneNhesripdnlsr 45 
                  ++s+++++  Ld+N +  + + +N++s   +n+++
  KKY23450.1 261 WEQSLQEAKPFLDKNPQVKELLEKNRSSLLSGNITK 296
                 578999999999999999999999999999999887 PP

>> CarD_CdnL_TRCF  CarD-like/TRCF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       1.5   2.1e+03      53      84 ..     127     155 ..     116     163 .. 0.72
   2 ?    1.1   0.0      0.48   6.7e+02      51      84 ..     200     233 ..     198     238 .. 0.86
   3 ?    6.5   2.6    0.0099        14      50      82 ..     237     269 ..     234     395 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.5
  CarD_CdnL_TRCF  53 dlirkyiskeepkldklggkrwektkekakkg 84 
                     dlir+      +++dk+ ++++++ k+   kg
      KKY23450.1 127 DLIREKH---GADVDKIVSETYKELKQVTDKG 155
                     3344444...4579999999999999988776 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.48
  CarD_CdnL_TRCF  51 qldlirkyiskeepkldklggkrwektkekakkg 84 
                     ++d++r +++k  p++++ + ++we+ ++++k g
      KKY23450.1 200 NIDQLRSLADKLGPEAKQKFDQTWEEVQDILKGG 233
                     68899999977799999999*******9999876 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0099
  CarD_CdnL_TRCF  50 dqldlirkyiskeepkldklggkrwektkekak 82 
                     + ld+ir++++k++ +++klg k+we+  + ak
      KKY23450.1 237 STLDRIRQLVQKKTSEVQKLGEKAWEQSLQEAK 269
                     56899*****99999***********9988876 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2      0.36     5e+02      33      86 ..       3      54 ..       1      58 [. 0.67
   2 ?   -0.1   0.0       1.1   1.5e+03      18      36 ..      73      91 ..      64     109 .. 0.47
   3 ?    2.9   0.0      0.13   1.7e+02       2      56 ..     132     188 ..     131     192 .. 0.60
   4 ?    8.8   0.0    0.0017       2.4       9      67 ..     170     228 ..     162     232 .. 0.87
   5 ?    2.5   0.1      0.16   2.3e+02       6      47 ..     218     257 ..     199     278 .. 0.50
   6 ?    3.0   0.7      0.12   1.6e+02      15      52 ..     356     393 ..     342     396 .] 0.62

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.36
      DUF883 33 RerleerlerarerlrdaeeavaerakeaaeaaddyVrenPwqavGiAagvGll 86
                R+  ++r++ +r+++++  ++   ++++a +++   ++ + + + GiA + G+l
  KKY23450.1  3 RSARTARARPLRQNCSRRFQST--SSQSAQDSTGGGAHTRAAVVGGIAGATGAL 54
                5555566666666666666643..445566777777999999999999999887 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.1
      DUF883 18 lkeaadeageeaeelRerl 36
                +k+++d  ++++++++e++
  KKY23450.1 73 VKQTKDYYESTINKVKENA 91
                3333333333333333333 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.13
      DUF883   2 eleaeleslladleellkeaade..ageeaeelRerleerlerarerlrdaeeavae 56 
                 ++ a+++++++++ + lk+  d+  + e+a+e+ + l+++l r  + + da+++v e
  KKY23450.1 132 KHGADVDKIVSETYKELKQVTDKglSVESASEAWQVLSKALGRIASLAGDASQQVIE 188
                 566777666666655555544431256777777777777777777777777776654 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.0017
      DUF883   9 slladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaadd 67 
                 ++l  +++l+ +a+++  e+   l+e++  +++++r+ ++++  +++++ ++  e+++d
  KKY23450.1 170 KALGRIASLAGDASQQVIENHPMLKEKVGGNIDQLRSLADKLGPEAKQKFDQTWEEVQD 228
                 55667788999999999999999****************************99998877 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.16
      DUF883   6 eleslladleellkeaadeageeaeelRerleerlerarerl 47 
                  +++  ++++++lk      +++++++R+ ++++ +++++  
  KKY23450.1 218 KFDQTWEEVQDILKGG--LDASTLDRIRQLVQKKTSEVQKLG 257
                 3333333333333222..223444555555555555544444 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.12
      DUF883  15 eellkeaadeageeaeelRerleerlerarerlrdaee 52 
                 ++  k+a++ a+e+++e+ + l+++le+ ++ ++da++
  KKY23450.1 356 KKHSKDAERLAKETIDEISQVLSKKLEEGKKLMDDASQ 393
                 34445666667777777777777777777777776665 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.8   6.9e-05     0.095      96     154 ..     203     262 ..     115     274 .. 0.82
   2 ?   -0.9   4.0      0.77   1.1e+03      94     152 ..     314     384 ..     278     396 .] 0.51

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.9e-05
     DUF4795  96 mleellekle.eqeealkkaldtLqeelkekldrlelepLkeqleerlkelqkelqeame 154
                 +l++l +kl  e+ ++ ++ ++++q+ lk  ld+  l+++++ ++++  e+qk  ++a e
  KKY23450.1 203 QLRSLADKLGpEAKQKFDQTWEEVQDILKGGLDASTLDRIRQLVQKKTSEVQKLGEKAWE 262
                 334455555489999***********************************9977666554 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.77
     DUF4795  94 ekmleellekleeqeealkkaldtLq............eelkekldrlelepLkeqleerlkelqkelqea 152
                 e  ++e+ +k++  ++ l+  ld L             +el +k  ++     ke ++e  + l+k+l+e 
  KKY23450.1 314 ESYIKEATQKIKDSSSGLEGYLDMLPggsellpkfeqfQELSKKHSKDAERLAKETIDEISQVLSKKLEEG 384
                 33334444444444444444444444555555555555444444443333333444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1706  (0.0951531); expected 358.6 (0.02)
Passed bias filter:                      789  (0.0440069); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.50
# Mc/sec: 2381.61
//
Query:       KKY23451.1  [L=405]
Description: putative xaa-pro dipeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-45  154.6   0.0    4.2e-45  154.0   0.0    1.3  1  Peptidase_M24  Metallopeptidase family M24
    8.7e-08   32.9   0.0      2e-07   31.7   0.0    1.7  2  Creatinase_N   Creatinase/Prolidase N-terminal domain


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.0   0.0   4.7e-49   4.2e-45       3     207 ..     176     384 ..     174     386 .. 0.88

  Alignments for each domain:
  == domain 1  score: 154.0 bits;  conditional E-value: 4.7e-49
                    HHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTTTCEESSSSEEEEGGGGGSTTT.BCSSSB--TTEEEEEEEEEEETTEEEEEEEEEE CS
  Peptidase_M24   3 irkaariasaaleavleaikpgvterelaaeieattlkrhgarglafppivasgenaavlhy.tpndrvlkegdlvlidagaeydgyasDitrTvl 97 
                    +r+++  + +a++++ +++ pg te ++a+++++t l +  + ++ f+ iv + ena+ +h+ t + + l  + +vlid+ga+++gy sD++rT++
     KKY23451.1 176 LRAVNTGTVEAIRQMRKCLYPGLTEGDVAQVLDKT-L-EAAGLDPFFD-IVLFDENASNPHGgTNGAKILTSETFVLIDVGAHLHGYSSDVCRTFV 268
                    788999999************************99.5.5555677776.*************5556888**************************8 PP

                    CSSGSHH..........HHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTBCCGBSSCSEEEESSSSSEEEEEESSSTTCSSB--TTBE CS
  Peptidase_M24  98 vGkftpe..........qrelyeavleaqeaaikavkpGvtlseidaaarevlesaglakffphglGHgvGlevhdegpsvsresndgrkleeGmv 183
                       f p+            +++++v +aq a i + ++G++++ +d aar+++++ag+++ f+h+lGHg+G++ h++ p++++ +n++++l++Gm 
     KKY23451.1 269 PP-FLPKtaaiqrklqkKMDVWDVVFRAQTASIGQFQEGNSAASVDIAARKIITDAGYGAAFTHRLGHGIGIKAHES-PYLNK-GNHNVTLRPGMA 361
                    74.33322223445544555*******************************************************98.**995.789********* PP

                    EEEEEEEEEETTTEEEEEBEEEEE CS
  Peptidase_M24 184 ftiEpgiyfapgeggvriedtvlv 207
                    ft Epg+y + +e+gvr ed +lv
     KKY23451.1 362 FTSEPGVYLV-DEFGVRHEDIFLV 384
                    ********65.666********99 PP

>> Creatinase_N  Creatinase/Prolidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   2.2e-11     2e-07       1     100 [.      15     138 ..      15     167 .. 0.78
   2 ?   -3.5   0.0       1.7   1.5e+04      77      92 ..     199     214 ..     177     236 .. 0.56

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 2.2e-11
                   HHHHHHHHHHHTT-SEEEEECCHHHHHHHSS.........-SSSEEEEEE.......ESSCEE......EEEECTTHHHHHHHH....TTSEEEEES CS
  Creatinase_N   1 RlerlralmeekgldallvtspenlrYltGfa......tetgsrglalvv.......tadgal......llvdalryteaaees...atveevveyd 75 
                   R++rl+ +++e g+da++v + + ++Y  ++       +e+++r++++vv            +      +l +a+++++++      a++ ++v+++
    KKY23451.1  15 RRQRLAVALDEDGIDAFIVEPGYTFQYYANVSqedwepWEPEERPFLMVVrpekddrG----VvsanttFLSPAFEAERVRLLGmpfAEPLSIVGWE 107
                   99**********************************************9976433330....3666666**************99**9********* PP

                   THSSHHHHHHHHH......HHHT-EEEE-TT CS
  Creatinase_N  76 dpvealadllkel......lesekrvgveld 100
                   + +  +++ll ++      l+s+ +v v+++
    KKY23451.1 108 EHWNPYTTLLQSTlfadvqLSSAPKVMVDEE 138
                   *888888888888444444444466666666 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.7
                   HSSHHHHHHHHHHHHT CS
  Creatinase_N  77 pvealadllkellese 92 
                    + ++a++l ++le++
    KKY23451.1 199 TEGDVAQVLDKTLEAA 214
                   4445555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2797.96
//
Query:       KKY23452.1  [L=481]
Description: hypothetical protein UCRPC4_g02900 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.042   14.1   0.0         15    5.9   0.0    3.4  3  TPR_12    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.06   1.1e+03      44      56 ..     281     293 ..     270     302 .. 0.72
   2 ?    5.9   0.0   0.00085        15      20      62 ..     359     401 ..     350     414 .. 0.73
   3 ?    2.9   0.1    0.0073   1.3e+02       2      31 ..     426     455 ..     425     474 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.06
      TPR_12  44 tattlrnLgrlyr 56 
                 ++++l nL+++y+
  KKY23452.1 281 VLNYLTNLAEVYF 293
                 5667777777774 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.00085
      TPR_12  20 deAlellekaleiarrllGpdhpltattlrnLgrlyralgrye 62 
                 +eA+  l++    +++++G ++p +++ l+ ++r+y+a+++  
  KKY23452.1 359 EEAIVVLKRMCVDQENVYGATSPKAIEPLYVIARTYFAAEKDL 401
                 55555555555556899*******************9997755 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.0073
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekale 31 
                 +a+a+ +la+v+ rlg   +A+++    l 
  KKY23452.1 426 RACAHGRLAQVYKRLGYDLQARSHALSLLS 455
                 689999999999999988888888766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 3108.59
//
Query:       KKY23453.1  [L=564]
Description: putative guanine deaminase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-47  162.5   0.0    4.5e-40  138.0   0.0    2.1  2  Amidohydro_1  Amidohydrolase family
  ------ inclusion threshold ------
      0.017   14.5   0.0      0.028   13.8   0.0    1.3  1  A_deaminase   Adenosine/AMP deaminase
        0.1   12.0   0.1         13    5.1   0.0    2.5  3  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.0   0.0   7.5e-44   4.5e-40       1     270 [.     107     392 ..     107     407 .. 0.91
   2 !   22.6   0.0   9.8e-09   5.9e-05     276     343 ..     444     562 ..     432     563 .. 0.78

  Alignments for each domain:
  == domain 1  score: 138.0 bits;  conditional E-value: 7.5e-44
                   EEEE-EEEEEEECETTECSSS....GHHHHH...........STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTHHHHHHHHHHHTSSSEEEEEEE CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrga....tledwl...........vppetaaealesgiktalksGtttvadmgattstgiealleaaeelplglrilgg 82 
                   +++PG+ID+H H++q+ +rg     +l++wl           ++p +a+ ++ s +  +l+ G+tt+ ++g  + ++++ l+  + +   g+r+l+g
    KKY23453.1 107 FIIPGFIDTHHHAPQYTQRGLgrgiPLLSWLqdvtfphearfEDPKYAQRTYTSLVNSMLRQGITTASYYGSLHGPATQILASICLAK--GQRALIG 201
                   79******************9****************************************************988888888877777..******* PP

                   SSEGGS.........GCCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHH.TTEEEEEETSSCHHHHHHHHHHTTT CS
  Amidohydro_1  83 kvsldr.........gsaetskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkr.dlpvaiHaletkgevedaeaafget 169
                   k+++d          +s   s+a+++ l++ +    ++++  +++++l+p++a ++++ +l+ + ++a     l++++H+ e + e++++++ f+  
    KKY23453.1 202 KCNMDShnspefyrdSSCAESLAQTKSLIQHI--RQLDPSANLIQPILTPRFAISCTPGLLSGLGSLALSDpSLMIQTHFNEAPDEIAYTRQLFP-- 294
                   ***************66666777777777777..66678889999*********************998888***********************.. PP

                   EEEETTTTSTCCHHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHH.HHHHHHHTSC.EEEEEECTTSSCCGGHHHHHHHH CS
  Amidohydro_1 170 iehgthlevaeslglldeiklilahgvhltpteaellkerlkeagvahcpfsnsilrsgrea.lrkaldeGvk.vglgtDgaasgnslnlleelrla 264
                     ++t ++ +  + ll++ ++ilah ++ t +e+ +l+    ++g+ahcp sn  + + ++a +r+ l++G+  +glgtD  + g s ++l++ rla
    KKY23453.1 295 -DFATETDLYSHYNLLTS-NTILAHTIFNTESEIQRLIDI--NIGIAHCPISNTTIPTFMAApIRRFLSQGLLkIGLGTD-SGGGYSSSILDTARLA 386
                   .99999************.*********************..*************9998765267777779877******.88889999****9999 PP

                   HHHHHH CS
  Amidohydro_1 265 lklqrg 270
                   + ++++
    KKY23453.1 387 YIVSNA 392
                   977764 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 9.8e-09
                   THCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCT................................................... CS
  Amidohydro_1 276 eegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldi................................................... 321
                    e+ l+l e+++++T++gA++++ld+k+G +++ k++D+ ++d  +                                                   
    KKY23453.1 444 RETPLTLPECFYLSTLGGARVCNLDSKTGNFQKDKEFDALLIDMPSccvldqnesdatsaaaaaaaaaavatsnndrdgynytstpiepeidtpkei 540
                   45569999**********************************9933444455777888888888887777777777777777777777777777776 PP

                   CGGGTTTCTSEEEEEEEETTEE CS
  Amidohydro_1 322 laafvglkkdgnvkkvivkGkl 343
                    ++f  + +d+n+ +v+v+G+ 
    KKY23453.1 541 FEKFLMTGDDRNIFGVWVRGRR 562
                   6666677777777777777765 PP

>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.7e-06     0.028     233     278 ..     328     371 ..     302     387 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.7e-06
                  HHHHCT-EEEE-HHHHCCCSST-TTTT-CHHHHHHTT-.EEEE--BS CS
  A_deaminase 233 llalaqiplevcPlSNvalgafleyaenPlkeflergl.nvslntDD 278
                  +l + +i+++ cP+SN  +    +  + P+++fl++gl ++ l+tD 
   KKY23453.1 328 RLIDINIGIAHCPISNTTI---PTFMAAPIRRFLSQGLlKIGLGTDS 371
                  566779**********999...777889********96489999996 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1    0.0044        26      10      20 ..     108     118 ..     106     133 .. 0.83
   2 ?   -3.2   0.0      0.73   4.3e+03     313     376 ..     317     371 ..     312     381 .. 0.71
   3 ?    5.1   0.0    0.0022        13     404     439 ..     444     479 ..     429     561 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0044
  Amidohydro_3  10 vlPGFvDsHtH 20 
                    +PGF+D H H
    KKY23453.1 108 IIPGFIDTHHH 118
                   69********* PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.73
  Amidohydro_3 313 haegvtesqiervaalqvaagvqpvfnfedelldsrlgperargstpvkellnagv.kvalgsDa 376
                   h+ + tes+i+r+ ++++ ++ +p++n           + ++ + +p+++ l++g+ k+ lg+D+
    KKY23453.1 317 HTIFNTESEIQRLIDINIGIAHCPISNT----------TIPTFMAAPIRRFLSQGLlKIGLGTDS 371
                   5556688888888888888888888887..........344445588888888885367778883 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0022
  Amidohydro_3 404 pdeelsleealalyTrgpAkalgledrkGtLevGad 439
                   ++  l+l e++ l T g+A++++l+ ++G+ ++ ++
    KKY23453.1 444 RETPLTLPECFYLSTLGGARVCNLDSKTGNFQKDKE 479
                   56789************************9888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3724.36
//
Query:       KKY23454.1  [L=1876]
Description: putative chitin synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.6e-247  819.9   0.4   1.1e-246  819.5   0.4    1.1  1  Chitin_synth_2   Chitin synthase
    4.4e-71  240.0   0.0    2.8e-62  210.9   0.0    2.1  2  Myosin_head      Myosin head (motor domain)
    3.3e-18   65.6   0.2    4.5e-15   55.6   0.1    2.7  2  Cyt-b5           Cytochrome b5-like Heme/Steroid binding doma
      5e-16   58.4   0.2    1.4e-15   56.9   0.2    1.9  1  DEK_C            DEK C terminal domain
    6.4e-11   42.5   2.2    6.4e-11   42.5   2.2    1.9  2  Glyco_trans_2_3  Glycosyl transferase family group 2
    3.1e-10   40.3   0.1    2.6e-09   37.3   0.0    2.3  2  Glyco_tranf_2_3  Glycosyltransferase like family 2
    2.3e-05   24.3   0.0      0.014   15.2   0.0    2.8  2  Glycos_transf_2  Glycosyl transferase family 2
  ------ inclusion threshold ------
      0.044   13.3   0.1       0.84    9.1   0.1    2.7  2  Glyco_transf_21  Glycosyl transferase family 21
      0.075   12.6   0.3       0.23   11.0   0.1    1.9  2  AAA_25           AAA domain
       0.12   12.2   0.0       0.28   11.1   0.0    1.5  1  RsgA_GTPase      RsgA GTPase
       0.17   12.1   0.2       0.65   10.3   0.1    2.0  2  AAA_22           AAA domain
        0.2   11.4   0.0       0.42   10.3   0.0    1.5  1  PduV-EutP        Ethanolamine utilisation - propanediol utili
       0.23   11.8   2.7       0.65   10.4   0.1    2.9  4  AAA_16           AAA ATPase domain
       0.29   11.2   0.6        4.5    7.4   0.5    2.6  2  MMR_HSR1         50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  819.5   0.4  8.7e-250  1.1e-246       2     527 .]    1222    1729 ..    1221    1729 .. 0.99

  Alignments for each domain:
  == domain 1  score: 819.5 bits;  conditional E-value: 8.7e-250
  Chitin_synth_2    2 stiiaksvaalqlidkrslefqlkfticlvtaysegeeglrttldslastdyddkrklllvvcdGlikGsGndkstPeivldllkdavspked 94  
                      s+i +k+ aalq++ k+ +e+ +kf+ic+v+ay+e+ee+lr+++ds+a+++yddkrkll+++cdG+i+G+Gnd++tP+ivld+l+  vs++ d
      KKY23454.1 1222 SIIGFKFFAALQFGRKNLPENLDKFVICQVPAYTEDEESLRRAIDSAARMRYDDKRKLLVIICDGMIIGQGNDRPTPRIVLDILG--VSETVD 1312
                      678899*******************************************************************************..****** PP

  Chitin_synth_2   95 veplsyvavaeGskrhnkakvyaGfyeyeddstvpeekqqrvPlivvvkvGtpseasekkPGnrGkrdsqiilmsflekvtfdermteleyel 187 
                      +epls+++++eG+k+hn++kvy+G+ye+++  ++       vP++v+vk+G+pse+s  +PGnrGkrdsq++lm+fl++v+++  m+++e+e+
      KKY23454.1 1313 PEPLSFESLGEGQKQHNMGKVYSGLYEVQG--HI-------VPFLVIVKIGKPSEVS--RPGNRGKRDSQMVLMRFLNRVHYNLPMSPMELEM 1394
                      *****************************8..77.......***************9..********************************** PP

  Chitin_synth_2  188 fkkikkviGvspdfyeivlmvdadtkvapdsltrlvaalvkdpeilglcGetkiankkeswvtaiqvfeyyishhlskafesvfGsvtclPGc 280 
                      +++i+++iGv+p+fye +l++dadt vapds+tr+vaa+++d++++g+cGet++ n+k s +t+iqv+eyyish+l+kafes+fGsvtclPGc
      KKY23454.1 1395 HHQIRNIIGVNPTFYEFMLQIDADTVVAPDSATRMVAAFLNDTRLIGVCGETSLHNAKTSLITMIQVYEYYISHNLTKAFESLFGSVTCLPGC 1487
                      ********************************************************************************************* PP

  Chitin_synth_2  281 fslyrikaakgadgkwvPilvspeiveeysenvvdtlhkknllllGedrylttlllktfpkrktvfvpqakcktvaPdtfkvllsqrrrwins 373 
                      +s+yri+aa++  g  +P++vs++ive+yse++vdtlh knll+lGedrylttll+k +pk+kt+++ +a+++t+aP+++kv++sqrrrwins
      KKY23454.1 1488 YSMYRIRAAES--G--KPLFVSRDIVEAYSEIRVDTLHVKNLLHLGEDRYLTTLLMKFHPKYKTKYIFNAHAWTIAPESWKVFMSQRRRWINS 1576
                      *********99..6..9**************************************************************************** PP

  Chitin_synth_2  374 tvhnllelvlvrdlcGtfcfsmrfvvfieligtvvlPvaiaftlylivasilksklvpviplvllaivlGlpailivltarkleyvawllvyl 466 
                      tvhnl+el+ +++lcG++cfsmrfvvf++l++t+v+Pv++ ++ yliv +ilk++++pv +++ll++++Gl++i+++l+ rk+e+++w+++y+
      KKY23454.1 1577 TVHNLVELIPLQQLCGFCCFSMRFVVFVDLLSTIVQPVTVFYIGYLIVSVILKPNVIPVTAFILLGAIYGLQGIIFILR-RKWEMIGWMIIYI 1668
                      *******************************************************************************.************* PP

  Chitin_synth_2  467 lalPifnfvlPlyafwhlddfswGetrvveGekkkkaageaegefdsskivlkrfeefere 527 
                      la+P+f++ lPlyafwh+ddfswG+trvv Gek++ ++ ++eg+fd+s+i+ kr+ee++ e
      KKY23454.1 1669 LAMPVFSLGLPLYAFWHMDDFSWGNTRVVLGEKGRAVVISDEGKFDPSSIPKKRWEEYQAE 1729
                      **********************************************************975 PP

>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.9   0.0   2.2e-65   2.8e-62      71     558 ..      81     607 ..      77     628 .. 0.85
   2 !   26.9   0.0     1e-09   1.3e-06     555     676 ..     668     786 ..     641     787 .. 0.78

  Alignments for each domain:
  == domain 1  score: 210.9 bits;  conditional E-value: 2.2e-65
                  HHHHHHHHHHHHTSEEEEEEESSTTSSHHHHHHHHHHHHHHHSSSSSCTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTS.... CS
  Myosin_head  71 iadeayrslledkenqsilisGEsGAGKteatKkvlqylasvaeskekveeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefdakg.... 164
                  +a +a+ +l ++ e+q+++  GE G GKt    ++l+ l s +++        l++k+  +  +++++   ktv    +s+ G f+e+++d ++    
   KKY23454.1  81 LAKRAWTRLGHRGEDQAVVFLGETGSGKTTLRSHLLSSLLSFSAT-------PLSTKLSLAAFVFDTLTTTKTVTTPTASKAGLFFELQYDGASgtnp 171
                  7899999**********************9999998877666543.......57788888999***************************97542333 PP

                  SEEEEEEEEECE-GGGGT---TT--SBHHHHHHHHCSTHHHHHHTT--TCCGSTTTTTTSSSSB...................TTS-HHHHHHHHHHH CS
  Myosin_head 165 kiagakietYLLEksRvvkqakeERnyHiFYqllagaseeekkelkledvkdyaylsqsgeltv...................dgiddseefketkka 243
                  +++g+k+    LE+sR+ k  ++ER++H+ Y+llag+s+ ek++l l++  +    s++g+l+                    +gi+d e f++ k a
   KKY23454.1 172 TLIGGKLLDHRLERSRISKVPTGERSFHVLYYLLAGTSAAEKSHLGLDNQIHI---STGGSLQRgasishkkwrylghptqlkAGINDGEGFQHFKTA 266
                  789********************************************965433...33333333334478999*********9*************** PP

                  HHHHT--HHHHHHHHHHHHHHHHHCTSSEEEECTTSSE................EESSHHHHHHHHHHHTS-HHHHHHHHHSEEEEETTEEEEEE-BH CS
  Myosin_head 244 ldilglseeeqkeifrivaailhlGniefkkeakdeqa................vledeeklekaaellgvdaeelekalvkrriktgkevvskalnv 325
                  l  l +  ++++ei +i+a+ilhlG++ef ++++++++                 ++++ +l++aa+ lg++a +le +l  ++ + ++e v++ l+ 
   KKY23454.1 267 LRKLEFPRSDIAEICQILASILHLGQLEFMTASATTTGaeesggysheggetitLVKNKGTLDIAAAFLGLNALDLEATLSYKTRTIHRERVTVMLDA 364
                  *****************************99886655557778999999999877788888************************************* PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-S-SEEEEEEEEE-B---SS..B-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSSGCGS- CS
  Myosin_head 326 eqaevardalakaiyerlFdwlverinkslekkkeekksfiGvLDiaGFEifek..nsFEqlcinyvnEkLqqlFnelvlklEqeeYvrEgiewkfid 421
                  + a+   d la+++y+ l ++++e+in+ +++ +e+ ++ i ++D  GF        + +ql  n + E L ++  +  + +  +    E++++    
   KKY23454.1 365 KGARDNADELARTLYSLLVTYIIENINQRVCAAEEAVANTISIVDFPGFAQNAAtgCTLDQLLNNAATESLYNFCLQSFFEQHTDMLDSEEVSVPASS 462
                  *************************************************8765511679*************************************** PP

                  GGGCCHHHHHHHHSSSTSHHHHHHHHHTSTTS-HHHHHHHHHHHHTTST.TEEETTS..........TTTTTEEEEEETTCEEEEE-TTHHHHHH--- CS
  Myosin_head 422 fgldnqaiidLiekkplGilslLdeecllpkatdetfleklvkafskha.kfeksrl..........kkgeakFiikHyAgkveYevegfleKnkDtl 508
                  + +dn +++  + kk +G+ls+Ld++++    +d++fl+ l ++f+k++ + +  +           +   a+F++kHyAg+v+Y v+g +e n D +
   KKY23454.1 463 Y-FDNSDTVRGLLKKGNGLLSILDDQTRK-GRSDSQFLDALRRRFDKKNpSITVGSAvyapgtsftsTGVAASFTVKHYAGEVDYPVNGLVEENGDLV 558
                  *.9***9999888889*********9875.4589***********5554343333223566666775667899************************* PP

                  -HHHHHHHHTSSSHHHHHHCCSHCHB--.........CSSSECCCCCSBH CS
  Myosin_head 509 nedlvellksskkkllaelfkeeekeakaeakksekkkkkkkkkkkfktv 558
                  + dl++l++s+k+++++elf +e  ++ a+ k++ + ++++ ++k ++  
   KKY23454.1 559 SGDLMSLIQSTKSDFVRELFGQEALQTLAHPKEHTAIMQAQVSSK-PMRK 607
                  *********************988866666555555554444443.2222 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 1e-09
                  CSBHHHHHHHHHHHHHHHHCT..SEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHH.HHHHHHHSSSEEEEHHHHHHHHGGGSTTSS-SS.SSSH CS
  Myosin_head 555 fktvgskfkeslaeLmktles..tnphfvRCikpnekkkakkldeslvleqlrclGvle.girirraGfpnRitfeefvqrYkllakkelkkllkeda 649
                   + ++s+f +sl+++ k+l+s   np fv C+kpn+++ a+++d++ v +ql++ G+ e + r+++  f     f ef+     la+  +  ++ +++
   KKY23454.1 668 HNGAASQFLSSLNAITKALTSpnLNPYFVFCLKPNDRRIANQFDSKCVRSQLQTFGITEiSQRLKNVDFGVFLPFGEFLG----LATGDV--SILGSD 759
                  5678999************96226799******************************99446888888888888888874....344443..223556 PP

                  HHHHHHHHHHTTS-GCGEEECSSEEEE CS
  Myosin_head 650 kkaveailkeleldkeeykiGktKiFf 676
                   + +++ l++ +  ++e ++G+t +F+
   KKY23454.1 760 MEKAQMALDDRRWPSNEARVGSTGVFL 786
                  666777788888888888888888885 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.1   3.5e-18   4.5e-15       3      73 ..     970    1098 ..     968    1099 .. 0.91
   2 !    7.4   0.0    0.0039       4.9       6      36 ..    1106    1133 ..    1101    1197 .. 0.73

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 3.5e-18
                  HHHTTTECTT..EEEEEETTEEEECTTTC.CCST..TCSHHHHTTTTSBBHHHHHHTT...GGCHHH.............................. CS
      Cyt-b5    3 eelskhngkn..dlwvairgkVYDvskfl.skhp..GgesailkyaGkDateafksvv...hsekda.............................. 61  
                  +els+hngkn  ++++airg V D+  f+ s++p   ++s+++kyaG Dat +f+++v   +++kd+                              
  KKY23454.1  970 SELSNHNGKNghSAFIAIRGIVLDLEAFIpSHYPniIPASSLKKYAGVDATSLFPVQVsalCQGKDGhvdptvlldysptnvsgsasviggndanak 1066
                  8******9999******************************************************99999999999999999999999999999999 PP

                  ...................HHHHHG.GEEEEE CS
      Cyt-b5   62 ...................ekllkk.ylvGkl 73  
                                      ++lk+ y++G +
  KKY23454.1 1067 yhdfryytndsrpdwfyeqMEMLKSnYKKGHI 1098
                  98888888888888888887779998999875 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0039
                  TTTECTTEEEEEETTEEEECTTTCCCSTTCS CS
      Cyt-b5    6 skhngkndlwvairgkVYDvskflskhpGge 36  
                  +k ++k+ +  +++g++YD++++++   Gg+
  KKY23454.1 1106 KKLASKQYSIAILNGRIYDFTDYIK---GGR 1133
                  5666777777889**********94...333 PP

>> DEK_C  DEK C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.2   1.1e-18   1.4e-15       1      53 [.    1819    1871 ..    1819    1872 .. 0.94

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 1.1e-18
       DEK_C    1 psdeeirkaireiLreaDLdtvTkkkvReqLeeklgvdLsekKafIkalIdei 53  
                  p+de +  +ireiLr+aDL+tvTkkkv ++Le ++g++L +k+a+I ++ +++
  KKY23454.1 1819 PTDEALLIEIREILRTADLMTVTKKKVKQELETRFGCNLDSKRAYIGSATEAV 1871
                  8*********************************************8877665 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.7       6.9   8.8e+03     137     169 ..     898     948 ..     893     962 .. 0.38
   2 !   42.5   2.2     5e-14   6.4e-11       4     193 ..    1414    1624 ..    1411    1681 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 6.9
  Glyco_trans_2_3 137 rkRwayGc.....eleklil..................lvrllgylgsllwsalpl 169
                      r+Rw+  +           l                  ++r    + +l+w +  +
       KKY23454.1 898 RRRWMALVwlltfF-----LpeaplkyfggmmrkdirtAWREKFAINLLIWLSCGF 948
                      56666665222220.....1222222222222222222223333344444443332 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 5e-14
  Glyco_trans_2_3    4 llDaDtvlppdclreiaaela.spevaivqgpvlvm.nvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalq........ 85  
                        +DaDtv+ pd+  + +a +  + +   v+g +    ++ ++++ ++++++ ++h+    + + +g+v+ ++G +++ r++a++        
       KKY23454.1 1414 QIDADTVVAPDSATRMVAAFLnDTRLIGVCGETSLHnAKTSLITMIQVYEYYISHNLTKAFESLFGSVTCLPGCYSMYRIRAAEsgkplfvs 1505
                       69**************997773556656666655543679999*****************************************88888888 PP

  Glyco_trans_2_3   86 ..........evggwd.gdessvsEDfdmglrlqrkG..yrvrfvpeslvkekspltlraalrQrkRwayGceleklillvrll..gylgsl 162 
                                 +v + +  +  +++ED ++   l++    y++ ++  +  ++  p +++ ++ Qr+Rw+       ++ lv l+   +l  +
       KKY23454.1 1506 rdiveayseiRVDTLHvKNLLHLGEDRYLTTLLMKFHpkYKTKYIFNAHAWTIAPESWKVFMSQRRRWINST----VHNLVELIplQQLCGF 1593
                       876666665533333312355*******99999744446***9999999**********************5....4444444433667777 PP

  Glyco_trans_2_3  163 lwsalplhlallllfsllalalvllllllla 193 
                       +++++ + +++ ll+ ++  ++v+ + +l +
       KKY23454.1 1594 CCFSMRFVVFVDLLSTIVQPVTVFYIGYLIV 1624
                       7777777777777777777666654444433 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.64   8.2e+02       4      46 ..    1247    1298 ..    1245    1311 .. 0.73
   2 !   37.3   0.0     2e-12   2.6e-09      79     228 ..    1394    1574 ..    1386    1576 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.64
  Glyco_tranf_2_3    4 lavlVptfneed.vlgevlesllaqey..pr.vevvvvv.....desdaetl 46  
                       +++ Vp++ e++  l++ ++s+++  y   r + v++++     +++d+ t 
       KKY23454.1 1247 VICQVPAYTEDEeSLRRAIDSAARMRYddKRkLLVIICDgmiigQGNDRPTP 1298
                       6789******998999*******99996433455555555566566666665 PP

  == domain 2  score: 37.3 bits;  conditional E-value: 2e-12
  Glyco_tranf_2_3   79 lnealravk......sdlvllvDdDtvvePdtlkrllqff.ltpkvgavg..tpvflln.rstlvsalgalefaerhlrflaarralg.vlt 159 
                       + +++r++       +++ l +D+Dtvv Pd+  r++++f ++   + +g  +   l+n  ++l+++ +  e+++ h  + a+   +g v++
       KKY23454.1 1394 MHHQIRNIIgvnptfYEFMLQIDADTVVAPDSATRMVAAFlNDT--RLIGvcGETSLHNaKTSLITMIQVYEYYISHNLTKAFESLFGsVTC 1483
                       556666633333444789999***********888888884555..566630444556646699********************88886789 PP

  Glyco_tranf_2_3  160 lnGsgslirrevlkele...................gldp.lflltdDyelglrlrr..agfrtayvpgaavrevfpsslkayikqrnRwv 228 
                       l G  s++r +  +  +                   ++ + l +l++D  l+  l++   +++t+y   a  ++  p+s+k +  qr+Rw+
       KKY23454.1 1484 LPGCYSMYRIRAAESGKplfvsrdiveayseirvdtLHVKnLLHLGEDRYLTTLLMKfhPKYKTKYIFNAHAWTIAPESWKVFMSQRRRWI 1574
                       999999999999888889999999999999****965555899********9999999889*****************************7 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0091        12       4      30 ..    1251    1277 ..    1249    1286 .. 0.75
   2 !   15.2   0.0   1.1e-05     0.014      78     167 ..    1407    1497 ..    1398    1499 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0091
                       EEESS-.TTTHHHHHHHHHHHGGCCEEE CS
  Glycos_transf_2    4 iptyNe.ektlletlesllaqdpypdfe 30  
                       +p+y e e+ l+++++s++++  y+d++
       KKY23454.1 1251 VPAYTEdEESLRRAIDSAARM-RYDDKR 1277
                       8********************.444333 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.1e-05
                       --SSEEEEEESSEEE-TTHHHHHHHHH.HH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHH CS
  Glycos_transf_2   78 atgdyilflDaDdepdpdwleklveal.ekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrreale 167 
                       +  +++l +DaD++++pd   ++v+a+ ++++  +v+g +  ++ +t  i+  + +++    + ++   sl+g++++  g+++++r +a+e
       KKY23454.1 1407 TFYEFMLQIDADTVVAPDSATRMVAAFlNDTRLIGVCGETSLHNAKTSLITMIQVYEYYISHNLTKAFESLFGSVTCLPGCYSMYRIRAAE 1497
                       56678899**********77776665516669999****************99887777777777777888999************99876 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         2   2.6e+03      26      85 ..     473     535 ..     468     549 .. 0.76
   2 ?    9.1   0.1   0.00066      0.84      26      93 ..    1404    1473 ..    1391    1575 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2
  Glyco_transf_21  26 leaakydllvisDsdvr...vkpdyLeellaaledpkvglVtslpvgsdakglaaaleaafln 85 
                      l +  + ll i+D+ +r    ++++L+ l +++ +++ ++ ++  v+++  +++++ +aa ++
       KKY23454.1 473 LLKKGNGLLSILDDQTRkgrSDSQFLDALRRRFDKKNPSITVGSAVYAPGTSFTSTGVAASFT 535
                      5555666777888877522256789*********99999999999999999999999887763 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00066
  Glyco_transf_21   26 leaakydllvisDsdvrvkpdyLeellaaled.pkvglVtslpvgsdakglaaaleaafl.ntlagvlqa 93  
                       ++   y+++++ D+d++v+pd  ++++aa+   ++   V++     +ak+   ++ +++  ++ +++++a
       KKY23454.1 1404 VNPTFYEFMLQIDADTVVAPDSATRMVAAFLNdTRLIGVCGETSLHNAKTSLITMIQVYEyYISHNLTKA 1473
                       55566999999***************99998623344466655555555544445555543455555555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00018      0.23      15      58 ..      77     120 ..      70     131 .. 0.88
   2 ?   -2.6   0.0       2.6   3.3e+03      37      63 ..     204     230 ..     203     243 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
      AAA_25  15 laapppprrwlvkgllpagelallaGapgtGKttlaldlalava 58 
                  aa++++r w   g++ ++  +++ G +g+GKttl ++l  +++
  KKY23454.1  77 EAAELAKRAWTRLGHRGEDQAVVFLGETGSGKTTLRSHLLSSLL 120
                 5789999*****************************99988776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.6
      AAA_25  37 llaGapgtGKttlaldlalavatGkpw 63 
                 llaG +++ K+ l ld  ++++tG ++
  KKY23454.1 204 LLAGTSAAEKSHLGLDNQIHISTGGSL 230
                 79********************99765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00022      0.28      88     122 ..      84     118 ..      73     148 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00022
                  TTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  88 egleelkellkdktsvlvGqSGvGKStLinallpe 122
                  +++++l ++ +d+ +v++G++G GK+tL  +ll++
   KKY23454.1  84 RAWTRLGHRGEDQAVVFLGETGSGKTTLRSHLLSS 118
                  566677788899****************9999986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00051      0.65       4      30 ..      94     120 ..      91     183 .. 0.79
   2 ?   -3.5   0.0       9.1   1.2e+04      71      97 ..    1254    1282 ..    1236    1285 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00051
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqld 30 
                 +++ +v  Ge+G+GKTtl   ll++l 
  KKY23454.1  94 EDQAVVFLGETGSGKTTLRSHLLSSLL 120
                 56788999*************999884 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 9.1
      AAA_22   71 erlsseellealeqalrarav..iellii 97  
                  ++ ++e l++a+  a+r r++  ++ll+i
  KKY23454.1 1254 YTEDEESLRRAIDSAARMRYDdkRKLLVI 1282
                  56888889999999999888888555555 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00033      0.42       3      31 ..      97     125 ..      95     135 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00033
   PduV-EutP   3 killiGkvgsGKttLtqalkgeelkYkkt 31 
                  ++++G++gsGKttL  +l    l+++ t
  KKY23454.1  97 AVVFLGETGSGKTTLRSHLLSSLLSFSAT 125
                 699**************999999888776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00051      0.65      21      49 ..      92     120 ..      77     146 .. 0.82
   2 ?   -2.9   0.0       6.1   7.8e+03     127     161 ..     471     504 ..     384     512 .. 0.66
   3 ?   -1.1   0.1       1.6   2.1e+03      67     136 ..     603     693 ..     569     699 .. 0.57
   4 ?   -1.6   0.0       2.4   3.1e+03     102     144 ..    1240    1287 ..    1204    1287 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00051
      AAA_16  21 sgrpelvllsGesGvGKsslvrellrale 49 
                 +g+ ++v++ Ge G+GK++l  +ll +l 
  KKY23454.1  92 RGEDQAVVFLGETGSGKTTLRSHLLSSLL 120
                 44449***************999998765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.1
      AAA_16 127 lallsrderplvlvlDdlqwadeaslqllaaLlrl 161
                   ll++ +  l+ +lDd  +   ++ q+l+aL r+
  KKY23454.1 471 RGLLKK-GNGLLSILDDQTRKGRSDSQFLDALRRR 504
                 344555.5557788888777777777777777665 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.6
      AAA_16  67 ipy.sa.laqalareellrqlldeaesaeleawrekleeala...................avpelagaeasrllellkrll.allsrderp 136
                  p+  + +a+ + + + +r l ++++++++++ re+  ++                     +v++l+  +as++l  l+++  al+s++  p
  KKY23454.1 603 KPMrKPsVARRAHN-SPMRSLSSRPTTRDRSPLREQHSDSDDavdslslaaptrtgtlkapSVSALHNGAASQFLSSLNAITkALTSPNLNP 693
                 44443335555534.88888888888888888888877777744444444444444444444555555555777777777776655555555 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 2.4
      AAA_16  102 eeala....avpelagaeasrllellkrll.allsrderplvlvlDdl 144 
                  +e+l     ++ ++  +++++l++++ +++ +++  +++ lv+++D +
  KKY23454.1 1240 PENLDkfviCQVPAYTEDEESLRRAIDSAArMRYDDKRKLLVIICDGM 1287
                  444445555334444455699999999999888888666699999975 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.5    0.0035       4.5       2      34 ..      98     130 ..      97     156 .. 0.82
   2 ?    0.6   0.0      0.45   5.8e+02      47      62 ..     393     419 ..     343     456 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0035
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTr 34 
                 v+++G + +GK+tL + l+ +    s++p  T+
  KKY23454.1  98 VVFLGETGSGKTTLRSHLLSSLLSFSATPLSTK 130
                 899****************98888888887776 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.45
                 E...........EEEEECGGCSSHHHH CS
    MMR_HSR1  47 e...........ielvDtpGliegase 62 
                 +           i +vD pG+ ++a +
  KKY23454.1 393 RvcaaeeavantISIVDFPGFAQNAAT 419
                 04444444444499******6544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1876 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.47
# Mc/sec: 12119.22
//
Query:       KKY23455.1  [L=1604]
Description: putative chitin synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.8e-230  765.4   0.0   3.9e-230  765.0   0.0    1.1  1  Chitin_synth_2   Chitin synthase
    6.9e-18   64.6   0.8      5e-12   45.8   0.1    2.6  2  Cyt-b5           Cytochrome b5-like Heme/Steroid binding doma
    5.9e-15   54.9   0.2    2.6e-14   52.9   0.2    2.0  2  DEK_C            DEK C terminal domain
      3e-11   43.6   2.9      3e-11   43.6   2.9    2.5  2  Glyco_trans_2_3  Glycosyl transferase family group 2
    5.9e-09   36.2   0.0    1.6e-08   34.7   0.0    1.7  2  Glyco_tranf_2_3  Glycosyltransferase like family 2
    2.6e-06   26.0   0.0    2.1e-05   23.0   0.0    2.0  2  Myosin_head      Myosin head (motor domain)
     0.0029   17.1   0.0     0.0082   15.6   0.0    1.7  1  Glyco_transf_21  Glycosyl transferase family 21
  ------ inclusion threshold ------
      0.032   14.0   0.0        1.3    8.8   0.0    2.4  2  Glycos_transf_2  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  765.0   0.0  1.7e-233  3.9e-230       2     525 ..     995    1503 ..     994    1505 .. 0.98

  Alignments for each domain:
  == domain 1  score: 765.0 bits;  conditional E-value: 1.7e-233
  Chitin_synth_2    2 stiiaksvaalqlidkrslefqlkfticlvtaysegeeglrttldslastdyddkrklllvvcdGlikGsGndkstPeivldllkdavspked 94  
                      ++i++k++aa+ql++kr++  q+kf+ic+v+ay+ege++lr+ ldsl++++yd+krkl+ v+cdG+i+G Gnd++tP+ivld+l+  v+pk d
      KKY23455.1  995 AVILVKFLAAMQLGSKRKPAPQDKFVICQVPAYTEGEDQLRKGLDSLTALQYDNKRKLICVICDGMIVGGGNDRPTPKIVLDILG--VDPKID 1085
                      57899********************************************************************************..****** PP

  Chitin_synth_2   95 veplsyvavaeGskrhnkakvyaGfyeyeddstvpeekqqrvPlivvvkvGtpseasekkPGnrGkrdsqiilmsflekvtfdermteleyel 187 
                      + +l +++v+ Gs + n++kvy+G+ye+e+  +v       vP+ivvvkvG++se+ ++kPGnrGkrdsq++l++fl++v++ + m++le+e+
      KKY23455.1 1086 PPALPFRSVGTGSEQLNYGKVYSGLYEFEG--NV-------VPYIVVVKVGKESEQPRSKPGNRGKRDSQVLLLQFLNRVHHRAPMSPLELEM 1169
                      *****************************8..66.......9*************************************************** PP

  Chitin_synth_2  188 fkkikkviGvspdfyeivlmvdadtkvapdsltrlvaalvkdpeilglcGetkiankkeswvtaiqvfeyyishhlskafesvfGsvtclPGc 280 
                      f++i ++iGv+p+ ye++lmvdadt+v  dsl+rlva++++d++i g+cGet+++n++ sw+t+iqv+eyyishhl+k+fes+fGsvtclPGc
      KKY23455.1 1170 FHQINNIIGVDPELYEYLLMVDADTNVREDSLNRLVASCANDAKIAGICGETSLENEERSWWTMIQVYEYYISHHLAKSFESLFGSVTCLPGC 1262
                      ********************************************************************************************* PP

  Chitin_synth_2  281 fslyrikaakgadgkwvPilvspeiveeysenvvdtlhkknllllGedrylttlllktfpkrktvfvpqakcktvaPdtfkvllsqrrrwins 373 
                      f++yr++++++  g  +P+++s++++ ey++ +vdtlhkknll lGedrylttl+ k+fp +  +f+++a + t aPdt++vllsqrrrwins
      KKY23455.1 1263 FCMYRLRTSDK--G--RPLIISDKVIAEYADGQVDTLHKKNLLALGEDRYLTTLMTKHFPAMSFKFLQNACALTAAPDTWSVLLSQRRRWINS 1351
                      ********999..6..9**************************************************************************** PP

  Chitin_synth_2  374 tvhnllelvlvrdlcGtfcfsmrfvvfieligtvvlPvaiaftlylivasilksklvpviplvllaivlGlpailivltarkleyvawllvyl 466 
                      t+hnl+elvl++dlcG++cfsmrfvvfi+l gt++lP++ +++ yli +++ ++   p+i+++++a+v+Gl+a++++++ r++++v+w+++y+
      KKY23455.1 1352 TIHNLAELVLLKDLCGFCCFSMRFVVFIDLFGTIILPATTVYIAYLIYKVAAHEGQFPLISIIMIAAVYGLQALVFIIR-RQWQHVGWMIIYI 1443
                      *******************************************************************************.************* PP

  Chitin_synth_2  467 lalPifnfvlPlyafwhlddfswGetrvveGekk.kkaageaegefdsskivlkrfeefe 525 
                      la+P+++f+lP+y+fw+ d+fswG+trvv Gek+ k++   +++ fd+ +i+l+r++e+ 
      KKY23455.1 1444 LAFPVYSFILPIYSFWNQDNFSWGNTRVVIGEKGnKQVIAVDDEGFDPRSIPLQRWDEYA 1503
                      *********************************934555667888*************96 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.1   2.2e-15     5e-12       2      73 ..     757     882 ..     756     883 .. 0.78
   2 !   16.7   0.1   2.7e-06    0.0061       7      29 ..     886     914 ..     884     970 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 2.2e-15
                 HHHHTTTECTTEEEEEETTEEEECTTTC.CCST.....TCSHHHHTTTTSBBHHHHHHTT...GGCHHH.............................. CS
      Cyt-b5   2 leelskhngkndlwvairgkVYDvskfl.skhp.....GgesailkyaGkDateafksvv...hsekda.............................. 61 
                 ++++s h+g++d +v+i+gkVYD++kf+  +h      + +s +l +aG+++ ++f+ ++   +s+ d+                              
  KKY23455.1 757 AKQVSYHQGQDDFYVSIHGKVYDITKFWkLQHSdngidTTSSNMLPFAGQNLDAYFPPPLsraCSGLDVddtvtmqnndttavqysealhtsgpilqss 855
                 689*************************767779****99999****************9999999999777777777777766666666666666655 PP

                 ............HHH...HHGGEEEEE CS
      Cyt-b5  62 ............ekl...lkkylvGkl 73 
                             +k+   +++y++G+l
  KKY23455.1 856 nstalhswnwysNKFvpkIEEYYKGDL 882
                 555555544444222666677888876 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.7e-06
                 TTE......CTTEEEEEETTEEEECTTTC CS
      Cyt-b5   7 khn......gkndlwvairgkVYDvskfl 29 
                 khn      +++++wv+i++k+YD++++ 
  KKY23455.1 886 KHNvtmqaqNDQRYWVIINQKIYDLTNYF 914
                 666666655788**************986 PP

>> DEK_C  DEK C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1   2.5e+03      39      52 ..    1342    1355 ..    1339    1356 .. 0.85
   2 !   52.9   0.2   1.1e-17   2.6e-14       1      54 []    1547    1601 ..    1547    1601 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
       DEK_C   39 LsekKafIkalIde 52  
                  Ls+++ +I+++I++
  KKY23455.1 1342 LSQRRRWINSTIHN 1355
                  89*********976 PP

  == domain 2  score: 52.9 bits;  conditional E-value: 1.1e-17
       DEK_C    1 psdeeirkaireiLreaDLdtvTkkkvReqLeeklgvdLs.ekKafIkalIdeil 54  
                  p++  i++air++L+e+DL++vTkk+vR+ +e +l+ +L+ ek+af++++Id++l
  KKY23455.1 1547 PDEFAIVDAIRSCLAEVDLESVTKKQVRALVEHRLQAELTgEKRAFLDRQIDNEL 1601
                  56778******************************9999889**********986 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   1.6      0.78   1.8e+03     160     194 ..     684     735 ..     678     741 .. 0.73
   2 !   43.6   2.9   1.3e-14     3e-11       2     152 ..    1187    1397 ..    1186    1459 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.78
  Glyco_trans_2_3 160 gsllwsalplhlallllfslla.................lalvlllllllaa 194
                      g+ +w++l+++l++++ +++l+                 l+lvll++ll a 
       KKY23455.1 684 GRRMWVSLVWMLTFWIPSPMLRyigrmkrpdvrmawrekLVLVLLIFLLNAL 735
                      6678999999999999998877799999999999999885555544444433 PP

  == domain 2  score: 43.6 bits;  conditional E-value: 1.3e-14
  Glyco_trans_2_3    2 illlDaDtvlppdclreiaaela.spevaivqgpvlvm.nvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalq...... 85  
                        l++DaDt + +d+l++++a +a + ++a ++g +  + + ++w++ ++++++ ++h  + ++ + +g+v+ ++G  ++ r++  +      
       KKY23455.1 1187 LLMVDADTNVREDSLNRLVASCAnDAKIAGICGETSLEnEERSWWTMIQVYEYYISHHLAKSFESLFGSVTCLPGCFCMYRLRTSDkgrpli 1278
                       689*******************9679********99974789*****************************************999777777 PP

  Glyco_trans_2_3   86 ............evggwdgdes........svsEDfdmglrlqrkG...yrvrfvpeslvkekspltlraalrQrkRwayGc..eleklil. 151 
                                   +v       +        +++ED ++   l++k    + + f   ++  +  p+t+   l Qr+Rw+     +l    + 
       KKY23455.1 1279 isdkviaeyadgQV-------DtlhkknllALGEDRYLTT-LMTKHfpaMSFKFLQNACALTAAPDTWSVLLSQRRRWINSTihNL----Ae 1358
                       77655444433322.......233334455*****99955.55555499*********99*********************64411....12 PP

  Glyco_trans_2_3  152 ......................................l 152 
                                                             l
       KKY23455.1 1359 lvllkdlcgfccfsmrfvvfidlfgtiilpattvyiayL 1397
                       222233333333334434433333333333322222220 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.4   7.6e+03       4      38 ..    1020    1057 ..    1019    1059 .. 0.76
   2 !   34.7   0.0   7.3e-12   1.6e-08      79     228 ..    1169    1349 ..    1158    1351 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.4
  Glyco_tranf_2_3    4 lavlVptfneed.vlgevlesllaqey..prvevvvvv 38  
                       +++ Vp++ e + +l++ l+sl a +y   r  ++v++
       KKY23455.1 1020 VICQVPAYTEGEdQLRKGLDSLTALQYdnKRKLICVIC 1057
                       67889***998879999*****9999853445566665 PP

  == domain 2  score: 34.7 bits;  conditional E-value: 7.3e-12
  Glyco_tranf_2_3   79 lnealravk......sdlvllvDdDtvvePdtlkrllqff.ltpkvgavgtpvflln.rstlvsalgalefaerhlrflaarralg.vltln 161 
                       ++++++++       ++++l+vD+Dt v  d+l rl++   +++k++ + +   l+n +++++++ +  e+++ h+   ++   +g v++l 
       KKY23455.1 1169 MFHQINNIIgvdpelYEYLLMVDADTNVREDSLNRLVASCaNDAKIAGICGETSLENeERSWWTMIQVYEYYISHHLAKSFESLFGsVTCLP 1260
                       444555433566666789*****************9999956666666666667777688****************9****999987899** PP

  Glyco_tranf_2_3  162 Gsgslirrevlkele...................gldp.lflltdDyelglrlrr..agfrtayvpgaavrevfpsslkayikqrnRwv 228 
                       G ++++r +  +  +                   ++ + l  l++D  l+  + +    +  +++  a   ++ p++++ +  qr+Rw+
       KKY23455.1 1261 GCFCMYRLRTSDKGRpliisdkviaeyadgqvdtLHKKnLLALGEDRYLTTLMTKhfPAMSFKFLQNACALTAAPDTWSVLLSQRRRWI 1349
                       ************999*****************955555888999**877776666244556668999*9*******************7 PP

>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   9.5e-09   2.1e-05     187     269 ..     150     237 ..     145     247 .. 0.86
   2 ?    0.0   0.0     0.084   1.9e+02     331     358 ..     273     300 ..     253     308 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 9.5e-09
                  T--SBHHHHHHHHCSTHH.HHHHTT--TCCGSTTTTTTSSSSB....TTS-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHCT CS
  Myosin_head 187 eERnyHiFYqllagasee.ekkelkledvkdyaylsqsgeltv....dgiddseefketkkaldilglseeeqkeifrivaailhlGn 269
                  + R++ +FY+l+ +as+  ek+ l l+++++y+ l+++++++       +dd++  ++ +  l+ +g++  + +++++++a+il++G+
   KKY23455.1 150 GYRAFDVFYYLFTSASTPaEKEFLGLKSPSSYSLLKKTSTYRPpaylYNVDDNAAAEDFRGCLKEIGIKGADLRGLLSVLAGILKFGE 237
                  669********99887651566689************9987652222789*************************************7 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.084
                  HHHHHHHHHHHHHHHHHHHHHHHHHTTS CS
  Myosin_head 331 ardalakaiyerlFdwlverinkslekk 358
                   r+ l   iye l dw++ + n+s+++ 
   KKY23455.1 273 QRELLISSIYELLVDWVIGQANESIKAA 300
                  56778899*****************976 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.7e-06    0.0082      21     109 ..    1174    1267 ..    1160    1273 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.7e-06
  Glyco_transf_21   21 nllqaleaakydllvisDsdvrvkpdyLeellaaled.pkvglVts.lpvgsdakglaaaleaafl.ntlagvlqa...klsglgfavGksm 106 
                       n + +++   y++l++ D+d+ v++d L++l+a+ +   k++ +++ +++  +++++++ + +++  ++ + ++++    ++ + +  G ++
       KKY23455.1 1174 NNIIGVDPELYEYLLMVDADTNVREDSLNRLVASCANdAKIAGICGeTSLENEERSWWTMI-QVYEyYISHHLAKSfesLFGSVTCLPGCFC 1264
                       6677889999************************987588888998466677777777755.555537777777775434467888888888 PP

  Glyco_transf_21  107 alr 109 
                       ++r
       KKY23455.1 1265 MYR 1267
                       877 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.056   1.3e+02       4      32 ..    1024    1054 ..    1022    1060 .. 0.76
   2 ?    8.8   0.0   0.00058       1.3      81     162 ..    1185    1267 ..    1179    1273 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.056
                       EEESS-.TTTHHHHHHHHHHH.GGCCEEEEE CS
  Glycos_transf_2    4 iptyNe.ektlletlesllaq.dpypdfeii 32  
                       +p+y e e+ l++ l+sl a  ++ +++ i+
       KKY23455.1 1024 VPAYTEgEDQLRKGLDSLTALqYDNKRKLIC 1054
                       8*******************93333333333 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00058
                       SEEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS.EEEECCHCCCCHC.CCCCCSTTCSTCCCEEE CS
  Glycos_transf_2   81 dyilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrv.generlyfkerkr.slkgnlsfeigsaallr 162 
                       +y+l +DaD+ + +d l +lv+   + +a+++  +   +  ++ + +++    +e ++  +  + + sl+g++++  g+++++r
       KKY23455.1 1185 EYLLMVDADTNVREDSLNRLVASCAN-DAKIAGICGETSLENEERSWWTMIQvYEYYISHHLAKSFeSLFGSVTCLPGCFCMYR 1267
                       79*******************99888.555554444444444444444433235666666655554155668888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.05u 0.34s 00:00:01.39 Elapsed: 00:00:00.54
# Mc/sec: 8940.91
//
Query:       KKY23456.1  [L=616]
Description: putative acetolactate synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-29  103.0   0.4    3.3e-29  101.7   0.4    1.7  1  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
      6e-15   55.3   0.0    1.1e-14   54.5   0.0    1.5  1  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
    2.2e-10   40.4   0.0    5.2e-10   39.2   0.0    1.6  1  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.4   5.5e-33   3.3e-29      54     169 ..       1     125 [.       1     127 [. 0.99

  Alignments for each domain:
  == domain 1  score: 101.7 bits;  conditional E-value: 5.5e-33
                   HHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEEE--CCCHH.........S..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHH CS
  TPP_enzyme_N  54 aAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsgdrptslrg.........qgvlqqeldqlalfrpvtkyaervtspeelpealr 141
                   +Adgyar+tg+p++v+v++ +G+  + +a+++A+ +r+P+l+++g  p+++ g          ++lq+++dq a++r++++ya ++++p++++++++
    KKY23456.1   1 MADGYARVTGQPQAVIVHVDVGTQALSCAMHNAHIARSPVLIFAGLCPSTMDGelrgsrtefINFLQDVFDQPAIVRQYCRYANEIRTPTNVKQMVA 97 
                   9******************************************************************999*************************** PP

                   HHHHHHHSSS--EEEEEEEHHHCC-EEE CS
  TPP_enzyme_N 142 rAirtalsgrpgPvylelpkdvlleevd 169
                   rA++ a+s+++gP+yl  +++v+++e++
    KKY23456.1  98 RALQFATSAPKGPAYLCAAREVFEAEME 125
                   *************************987 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   1.8e-18   1.1e-14      11     152 ..     362     530 ..     352     531 .. 0.81

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 1.8e-18
                   HHHTTSSSSEEECETTTS-TTTHHHHHHHHHHH...............STTSEEEEEEEHHHHHHTGGGHHH..HHHTT-SEEEEEEE-SBCCCHHH CS
  TPP_enzyme_C  11 rllkvkrprsyltsgglgtmGyglpaAiGakla...............kpdrevvaivGDGgflmilqelat..avrrnlpitvvvlnNegygmtgg 90 
                     l++++p+sy++ +g g +G++ +a++G+kla               +++  v  i+GDG+f ++++e++   +  + +p++v++lnN+g+++ ++
    KKY23456.1 362 DQLQCTTPGSYMS-SGAGGLGWAGGASLGIKLAldtqassstspshriNKGTFVTQIIGDGCFVFSHPETVYwiSQAYSIPLLVIILNNNGWNAPRK 457
                   4458889999988.59****************55556677777777666679**************88875510556789***************** PP

                   H...HHHHTCCTTTTSBB.....BS----HHHHHHHTTSEEE.EESSH.HHHHHHHHHHHH...CSSSEEEEE CS
  TPP_enzyme_C  91 q...qepfggkrksgpagk....dlkpvdfaklaealGakga.rvekadveeleealkeal...ekkgpalie 152
                        +p+g++++ ++ +     + +++d+  +a+a+ a  + +   +++++l+e+l ea+   +++ + +i+
    KKY23456.1 458 SlhlVHPAGEGSQISNLDLnigfNRPSPDYPGIARAASAGSIgTGYANTWADLDEILPEAVrtvKSGTSYVID 530
                   *9998999999988877669*988999*********98886665557778**********9887777777777 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   8.7e-14   5.2e-10       1     114 [.     147     253 ..     147     257 .. 0.89

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 8.7e-14
                   HHHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT.-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvarsgaseelrelaeklg.iPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgs 96 
                   ie++ ++l aa+ p+++ G   ++++a  el+ la+ ++ + vv++  g  ++p dhp +lg     g+++a++ +e aD++l+l ++  ++ t   
    KKY23456.1 147 IEEISDALLAAEEPLVITGYVGRNFKAVGELAGLADIIKsLRVVDMSIGDMCFPADHPAWLG-----GKYSAHDSIETADVILVLDCDVPWVPT--- 235
                   688999******************************9974789*****************88.....99**********************643... PP

                   TT.TTTTT-EEEEEESSCC CS
  TPP_enzyme_M  97 ep.efapeakiihididpa 114
                    + +  ++aki h+d+dp 
    KKY23456.1 236 -QcRPRKDAKIYHVDVDPL 253
                   .31223345********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.48
# Mc/sec: 3820.17
//
Query:       KKY23457.1  [L=366]
Description: putative cut9 interacting protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-26   93.2   0.0    2.6e-26   92.5   0.0    1.3  1  TatD_DNase  TatD related DNase


Domain annotation for each model (and alignments):
>> TatD_DNase  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.0   1.5e-30   2.6e-26      50     253 ..      36     351 ..       3     353 .. 0.87

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 1.5e-30
                 T.TTTEEEEE---GGGGGC....................................C.CCHH.HHHHHH.HHCCCTSEEEEEEEEEET......-CCCCC CS
  TatD_DNase  50 kypnkvyavlGiHPnevde....................................asedll.eelkel.anvkhskvvaiGeiGLDy......ysrees 104
                  ++ k+++++G+HP+ +++                                    ++++ l ++l+e  + +   + ++iGe+GLD             
  KKY23457.1  36 DQSHKIMPCFGWHPWFSYQlyddteddsksppspiehyesvlqpkctdqafidtlPNPRSLrRFLQETeSRLLSHPHSLIGEVGLDRsfrlpiA----- 129
                 36778******************************************9999999954554448888888888888999*********7776651..... PP

                 GH.............................HHHHHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHH................................ CS
  TatD_DNase 105 tk.............................eaqeevFeeqlrlAkelklplviHlrkaeedlleil................................ 142
                  +                             ++q+ ++++qlrlA ++++ ++iH+++ +  + e+l                                
  KKY23457.1 130 -WtesekqqrneaytegsregrplspyhvhlSHQKSILKAQLRLAGKHGRSVSIHSVQGHGAVFEVLqelwkgherhvptkrerkrqkadpgshhtadn 227
                 .22222245788999**********************************************999999999****************************9 PP

                 ........HHCGGCCS....EEEETT--S-HHHHHHHHHT....TEEEEE-GGGGTTTTHH....HHHHHHHS-GGGEEE---TTSSEECCCTTSE--G CS
  TatD_DNase 143 ........keaaeaka....kvvlHsfsgsaeeakkflkl....gyyislsglltfknake....lrelvkavpldrlLiETDaPyltpkpyrgkrnep 221
                         +++ ++++    +++lHs+sg  + + +fl+     ++y+s+s ++++ + ++    + +++k +p +r+L+E+D  y +       +  +
  KKY23457.1 228 slqpsqtnTSYPPPPLpyppRICLHSYSGPLDPLHQFLNPtvpaQIYFSFSRVINYPDPQKpnpkVEAVLKDLPENRILVESD--YHSA-----GPETD 319
                 99998765444444449999******************666999*************9666677799999*************..5555.....7899* PP

                 GGHHHHHHHHHHHHTS-HHHHHHHHHHHHHHH CS
  TatD_DNase 222 anvayvveklaelkaltleelaeitaeNakrl 253
                 + ++ +v+k++e+++++ ++  ei+a N k++
  KKY23457.1 320 ELLEWIVRKVCEIREWDTKKGVEILARNWKEF 351
                 ****************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2385.57
//
Query:       KKY23458.1  [L=275]
Description: hypothetical protein UCRPC4_g02906 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-05   23.4   7.9    0.00013   22.1   3.0    2.2  2  GCN5L1          GCN5-like protein 1 (GCN5L1)
    0.00043   20.4   2.4    0.00063   19.8   2.4    1.2  1  Rootletin       Ciliary rootlet component, centrosome cohesio
      0.002   17.6   5.6     0.0031   16.9   5.6    1.3  1  DUF3552         Domain of unknown function (DUF3552)
     0.0028   17.0   6.6     0.0044   16.4   6.6    1.3  1  DUF3450         Protein of unknown function (DUF3450)
     0.0061   17.3   0.8     0.0099   16.6   0.8    1.4  1  Pal1            Pal1 cell morphology protein
     0.0073   16.5   5.7      0.012   15.8   5.7    1.3  1  ATG16           Autophagy protein 16 (ATG16)
  ------ inclusion threshold ------
      0.016   15.2   2.9      0.035   14.1   2.9    1.6  1  Prefoldin_2     Prefoldin subunit
      0.038   14.2   0.6       0.11   12.7   0.6    1.8  1  DUF4148         Domain of unknown function (DUF4148)
      0.038   12.9   2.3      0.056   12.3   2.3    1.2  1  Spc7            Spc7 kinetochore protein
        0.1   12.8   9.7       0.15   12.2   9.7    1.6  1  CENP-Q          CENP-Q, a CENPA-CAD centromere complex subuni
       0.13   12.6   7.6       0.19   12.0   7.6    1.3  1  OmpH            Outer membrane protein (OmpH-like)
       0.18   12.5   1.8       0.37   11.5   1.8    1.4  1  YabA            Initiation control protein YabA
       0.22   12.0   7.8       0.56   10.7   7.8    1.7  1  ZapB            Cell division protein ZapB
       0.58    8.6   4.0       0.67    8.4   4.0    1.1  1  FUSC            Fusaric acid resistance protein family
       0.87    9.7   3.4        5.9    7.1   2.3    2.6  1  NYD-SP28_assoc  Sperm tail C-terminal domain
        1.5    9.4  13.0        0.3   11.6   9.5    1.6  2  APG6_N          Apg6 coiled-coil region
        1.9    8.6   9.6        2.9    7.9   9.6    1.2  1  ADIP            Afadin- and alpha -actinin-Binding
        2.1    8.2   6.4        1.5    8.7   4.2    1.9  2  DivIC           Septum formation initiator


Domain annotation for each model (and alignments):
>> GCN5L1  GCN5-like protein 1 (GCN5L1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   3.0   1.3e-07   0.00013       6      88 ..      37     119 ..      34     121 .. 0.95
   2 ?    3.9   0.2     0.058        58      83     113 ..     163     193 ..     146     194 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.3e-07
      GCN5L1   6 qakqaerreeqekakkeaiesaaaltealvdklnsgvaeayanqkklekeakalqanvakfakqtdqWlalvesfnsalkeiG 88 
                 q+++ +r +++ +a++  ++s+++   +l  +l+++ + ++  + +lek+  +lq++++ ++ ++++  a +++ ++ l e+G
  KKY23458.1  37 QSSSLTRAQRTAEARAAFTASLRSAGAHLDSELQARAKGLHDTAAALEKQEEDLQQQTKGLRAENEKLEAFMKEQRQVLSEMG 119
                 667778889999*********************************************************************98 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.058
      GCN5L1  83 alkeiGDvenWaktienDlksitealeyvyk 113
                 ++ ++GD+    + +en+l +++e+ ++v +
  KKY23458.1 163 NIEDLGDIDTFLQGVENELLVLEETCRIVEE 193
                 4789********************9998875 PP

>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   2.4   6.3e-07   0.00063      56     138 ..      45     126 ..      12     134 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 6.3e-07
   Rootletin  56 ssareleeeesadleealakLeeErq.rseklaqvnslLreqleearqaneaLtedlqkltkdwerlreeleqkekewreeeea 138
                 +++ e +   +a+l +a a+L+ E q r++ l ++ + L +q e  +q+ + L+ +++kl++ +++ r+ l   e+ ++++++a
  KKY23458.1  45 QRTAEARAAFTASLRSAGAHLDSELQaRAKGLHDTAAALEKQEEDLQQQTKGLRAENEKLEAFMKEQRQVLS--EMGFQTRQQA 126
                 34456666677889********99665**********************************99999888887..6666666554 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   5.6   3.1e-06    0.0031      93     154 ..      68     129 ..      63     154 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.1e-06
     DUF3552  93 tLdrkeeslekkeesleekekelkqkeqsleekeeeleelveeqrqeLerisgLtkeeAkei 154
                 +L+ + + l +  ++le++e++l+q+++ l++++e+le+ ++eqrq L ++   t+++A e+
  KKY23458.1  68 ELQARAKGLHDTAAALEKQEEDLQQQTKGLRAENEKLEAFMKEQRQVLSEMGFQTRQQAEEL 129
                 6888999999999*************************************999999999875 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   6.6   4.4e-06    0.0044      23      88 ..      57     122 ..      32     132 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.4e-06
     DUF3450  23 keaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqi 88 
                 +  ++  + +++ q++ + l d ++ l+++ ++l+++++ l+++ne+le+ +++q+q ++++  q 
  KKY23458.1  57 SLRSAGAHLDSELQARAKGLHDTAAALEKQEEDLQQQTKGLRAENEKLEAFMKEQRQVLSEMGFQT 122
                 455566778899***********************************************9986554 PP

>> Pal1  Pal1 cell morphology protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.8   9.9e-06    0.0099      62     130 ..      77     145 ..      38     153 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 9.9e-06
        Pal1  62 ldevfGredeeddkdlaklsakakkkesset.kaakksskevtafdsktkaelvhGeetaGLGssTFldG 130
                 +d++   e++e+d + ++++  ++++e+ e+ ++ +++  + + f+++++ae + G+++aG G+s F++ 
  KKY23458.1  77 HDTAAALEKQEEDLQ-QQTKGLRAENEKLEAfMKEQRQVLSEMGFQTRQQAEELRGSSAAGRGTSDFVEA 145
                 333333332222222.3334444455554545777888888899************************96 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   5.7   1.2e-05     0.012      51     148 ..      30     131 ..       7     149 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.2e-05
       ATG16  51 sksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletk....lkdreee 145
                 s++  +++++++++a+ ++++++a ++sl ++ a l +el++  k   ++a  l + +e lq++ + l++++e+l++  +e +++  +     ++++ee
  KKY23458.1  30 SSPAPSTQSSSLTRAQRTAEARAAFTASLRSAGAHLDSELQARAKGLHDTAAALEKQEEDLQQQTKGLRAENEKLEAFMKEQRQVLSEmgfqTRQQAEE 128
                 23333344555555555677889999*************************************************998777776655411114555566 PP

       ATG16 146 lre 148
                 lr+
  KKY23458.1 129 LRG 131
                 655 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   2.9   3.5e-05     0.035      62     102 ..      78     118 ..      64     122 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.5e-05
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
  Prefoldin_2  62 evkeeLeerketlekeiktlekqleklekeleelkeelqkk 102
                  ++ + Le+++e+l+++ k l  + ekle+ ++e++++l ++
   KKY23458.1  78 DTAAALEKQEEDLQQQTKGLRAENEKLEAFMKEQRQVLSEM 118
                  56678999999999999999999999999999999988775 PP

>> DUF4148  Domain of unknown function (DUF4148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.6   0.00011      0.11      21      42 ..      18      55 ..       2      64 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
     DUF4148 21 a................ahskspkTRAqVraELaqaea 42
                +                + ++s++TRAq  aE+ +a  
  KKY23458.1 18 SsnpaffpfqsgsspapSTQSSSLTRAQRTAEARAAFT 55
                245566666667788888999************99975 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.3   5.7e-05     0.056     140     205 ..      65     130 ..      61     144 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.7e-05
        Spc7 140 LkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelr 205
                 L ++l+ + +gl + ++ Lekqee l++  + l++e ++le+ ++++++   e+   ++++ eelr
  KKY23458.1  65 LDSELQARAKGLHDTAAALEKQEEDLQQQTKGLRAENEKLEAFMKEQRQVLSEMGFQTRQQAEELR 130
                 78899999999999***************************9999999988888776666666666 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   9.7   0.00015      0.15      30      86 ..      76     134 ..      32     227 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00015
      CENP-Q  30 lldekaaleaqLspelhslelLeaeiekeeralerdyeaLreLeknakaeare.rke.k 86 
                 l d +aale+q + ++++ + L+ae ek+e+  ++  + L e+  +++ +a+e r    
  KKY23458.1  76 LHDTAAALEKQEEDLQQQTKGLRAENEKLEAFMKEQRQVLSEMGFQTRQQAEElRGSsA 134
                 668899**********************************************9655453 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   7.6   0.00019      0.19      19      85 ..      53     117 ..      39     159 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00019
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  19 aaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqk 85 
                 a  + l +  + l+ el+a++k l++ +++l+k++++   +++ + l++++++l++++++++q l +
  KKY23458.1  53 AFTASLRSAGAHLDSELQARAKGLHDTAAALEKQEED--LQQQTKGLRAENEKLEAFMKEQRQVLSE 117
                 4445555555666666666666666666666644444..3333333555555444444444433222 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.8   0.00037      0.37       5      62 ..      68     125 ..      65     139 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00037
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXX CS
        YabA   5 elfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekek 62 
                 el ++ + l+++ ++l ++ e+l+++++ l  en++Le+  ++ r+ l+e   +++++
  KKY23458.1  68 ELQARAKGLHDTAAALEKQEEDLQQQTKGLRAENEKLEAFMKEQRQVLSEMGFQTRQQ 125
                 4445555555555666666666666666666666666666555555553333333222 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   7.8   0.00056      0.56       8      53 ..      68     121 ..      65     131 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00056
        ZapB   8 qLEskiqkaidtitlLqmeieeLkeeneelkeenreleeeneqlk........e 53 
                 +L+++ + + dt ++L ++ e+L+++ + l  en++le+  ++ +        +
  KKY23458.1  68 ELQARAKGLHDTAAALEKQEEDLQQQTKGLRAENEKLEAFMKEQRqvlsemgfQ 121
                 899***********************************8888888444444444 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   4.0   0.00067      0.67     155     253 ..      38     137 ..      29     208 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00067
        FUSC 155 apalrarlrallrdalalaaaalageegaeareaararlaadilalealrsqaayesprirararalrrllsrmlallalls.slarllarlraeeaaa 252
                 +  l ++ r++ ++a+ +a+   ag+  +++ +a+ + l+++++ale++ + +   +  +ra++++l +++ ++  +l+ +   ++++ ++lr ++aa 
  KKY23458.1  38 SSSLTRAQRTAEARAAFTASLRSAGAHLDSELQARAKGLHDTAAALEKQEEDLQQQTKGLRAENEKLEAFMKEQRQVLSEMGfQTRQQAEELRGSSAAG 136
                 445555555555556666666666666666777888999999999999999999999999999999999999999888877525666666677666655 PP

        FUSC 253 v 253
                 +
  KKY23458.1 137 R 137
                 4 PP

>> NYD-SP28_assoc  Sperm tail C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   2.3    0.0059       5.9      36      58 ..      88     110 ..      66     112 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0059
  NYD-SP28_assoc  36 aklieetesLekqNeeLrnlLkq 58 
                     + l ++t+ L+++Ne+L+  +k+
      KKY23458.1  88 EDLQQQTKGLRAENEKLEAFMKE 110
                     56889999999999999999886 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   9.5    0.0003       0.3      19     100 ..      45     124 ..      36     134 .. 0.72
   2 ?   -2.7   0.1         8   7.9e+03      89      89 ..     193     193 ..     169     223 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0003
      APG6_N  19 eqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeer 100
                 +++ + r a+++ l+   ++ ++e   +   + l++  ++lek+ee+l+++ k l +e+e+lea ++++++ l+++  + ++
  KKY23458.1  45 QRTAEARAAFTASLRSAGAHLDSEL--QARAKGLHDTAAALEKQEEDLQQQTKGLRAENEKLEAFMKEQRQVLSEMGFQTRQ 124
                 4444555555555555556655543..5666778888999************************999999988877655555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 8
      APG6_N  89 e 89 
                 e
  KKY23458.1 193 E 193
                 2 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   9.6    0.0029       2.9      46     121 ..      42     118 ..      39     130 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0029
        ADIP  46 qardrdleqreslnetirkleaeie.rlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrl 121
                  + +r +e+r ++++ +r+  a ++  lq++ + l++  ++le++ + +q++++ l++++++le+ +k++++ l+ +
  KKY23458.1  42 TRAQRTAEARAAFTASLRSAGAHLDsELQARAKGLHDTAAALEKQEEDLQQQTKGLRAENEKLEAFMKEQRQVLSEM 118
                 67789999999999999999888652689999999999999999999999999999999999999999999998755 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.2    0.0015       1.5      20      49 ..      81     110 ..      68     117 .. 0.81
   2 ?   -2.8   0.0       5.5   5.4e+03      24      47 ..     124     147 ..     120     157 .. 0.45

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0015
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
       DivIC  20 kqlkqeiaalqaelaklkaeneeLeaevkd 49 
                  +l+++ ++lq++ + l+aene+Lea  k+
  KKY23458.1  81 AALEKQEEDLQQQTKGLRAENEKLEAFMKE 110
                 467888899999999999999999987765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.5
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  24 qeiaalqaelaklkaeneeLeaev 47 
                 q+ ++l    a+ + + +  eaev
  KKY23458.1 124 QQAEELRGSSAAGRGTSDFVEAEV 147
                 444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1383  (0.0771376); expected 358.6 (0.02)
Passed bias filter:                      719  (0.0401026); expected 358.6 (0.02)
Passed Vit filter:                       144  (0.00803168); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 1738.08
//
Query:       KKY23459.1  [L=525]
Description: hypothetical protein UCRPC4_g02907 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-70  238.0   0.0    1.5e-70  237.6   0.0    1.1  1  CAP59_mtransfer  Cryptococcal mannosyltransferase 1


Domain annotation for each model (and alignments):
>> CAP59_mtransfer  Cryptococcal mannosyltransferase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.6   0.0   8.6e-75   1.5e-70       1     241 []     140     402 ..     140     402 .. 0.87

  Alignments for each domain:
  == domain 1  score: 237.6 bits;  conditional E-value: 8.6e-75
  CAP59_mtransfer   1 kvfiAanlynne.ell.pewleallelirfLgpenvfvSiyesgskdgtkeaLraleaelealgversivlneeteleldeles.....gkkel 87 
                      k+fiAa++++ + el  + w++a+l li++Lgp+nvf+Siye++   +++eaL+++    +++g+++++ ++e+  l+ ++l +     g++++
       KKY23459.1 140 KIFIAASIFDPDgELAqGPWSKAVLGLIDILGPDNVFLSIYENNAGTTAREALESM---GQEVGCQHELIFDEN--LDPSTLLHftlpdGTRRV 228
                      79********9989999*************************************99...899*******77633..3334444455566989** PP

  CAP59_mtransfer  88 kRIeyLaelRNkaLepLeelakegkekfdkvlFlnDvvftaedileLleqqnge........ydaaCalDfskkplkfyDtwvlRdleGkefls 173
                      kRI+yLae+RN+aL+pLe      + kfdk+l+lnDv+f++ ++++Ll+ ++++        y+aaCa+Df+ +p+kfyDt+++Rd+eG++++ 
       KKY23459.1 229 KRITYLAEVRNRALKPLEL-L---EIKFDKILYLNDVIFDPIEAAHLLFLTKAQdtdagrtdYRAACAVDFI-NPFKFYDTFATRDSEGYSMGL 317
                      *****************65.3...358**********************9763334445566**********.99******************* PP

  CAP59_mtransfer 174 plwpyfks...eesreaveagldpvpVksCWnGmvaldaepf.........lae........eklrFRaseesaseleasEcclihaD 241
                      p++p+f++    +sr++v a++d+v VksCW+Gmva+da+ f         + +        e+ rFRa e  + +++asEcclihaD
       KKY23459.1 318 PFYPWFTDsgrGRSRQDVLAQKDAVMVKSCWGGMVAFDAKYFqfnfadklnT-AgdlrkapaEGFRFRAEE--DLFWDASECCLIHAD 402
                      *******999999***************************996666655550.0555556669******64..47************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3545.01
//
Query:       KKY23460.1  [L=325]
Description: hypothetical protein UCRPC4_g02908 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.17   11.7   0.0         11    5.9   0.0    2.4  2  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0    0.0034        61      41      60 ..     179     198 ..     147     206 .. 0.74
   2 ?    5.9   0.0   0.00063        11       1      53 [.     242     293 ..     242     306 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0034
                 EEEEEESSHHHHHHHHHHHT CS
       RRM_1  41 fafVeFeskedAekAlealn 60 
                  afV+F+  +dA++  +a  
  KKY23460.1 179 RAFVTFTAGDDARHYYNATA 198
                 69**********98776655 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.00063
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHH CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAe 53 
                 ++V+n p+++t+  Lk++ +  G+  ++ + +  t+  k +af  Fe +++A+
  KKY23460.1 242 VVVKNCPQEYTNMALKRIGEARGEL-ECFVDKGITNGQKEVAFRYFEIERAAQ 293
                 78****************9999998.777777788888888888888777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2100.42
//
Query:       KKY23461.1  [L=400]
Description: putative methionine vitamin-b12 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-11   44.6   0.0    1.1e-06   28.2   0.0    2.8  2  Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
    0.00072   19.1   0.0     0.0025   17.4   0.0    1.9  3  Meth_synt_1  Cobalamin-independent synthase, N-terminal domai
  ------ inclusion threshold ------
       0.12   12.4   0.0       0.34   11.0   0.0    1.7  1  Phage_Orf51  Phage Conserved Open Reading Frame 51
       0.13   12.6   0.0       0.26   11.7   0.0    1.4  1  Myofilin     Myofilin


Domain annotation for each model (and alignments):
>> Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   1.4e-05     0.064       7      84 ..      14      91 ..       9     101 .. 0.90
   2 !   28.2   0.0   2.4e-10   1.1e-06     146     322 ..     177     392 ..     166     394 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
                 SB---SS-----------------HHHHHHHHHHHHHHHHHHTT--SCBE-B-TT-SSTTHHHHTTSTTEE--SS--E CS
  Meth_synt_2  7 GSfPqtaevrearaevkkgelseeeyekaireeiekvvrrqeelgvDvlvhgepeRgdmveyfgealdgfaftkngwv 84
                 GS    +e+ e++ +++k+els++e  k   e ++k+v++q + g   +++ge  R    + f e+l+g+ + +n ++
   KKY23461.1 14 GSLLRPKELLETHGKFEKKELSQQEVAKIEDESVDKIVQVQLDCGFGAVSDGEYRRAVFWGSFFEELEGMTEIRNPDI 91
                 56666677889999********************************************************99888776 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 2.4e-10
                  HHHHHHHHHHHHHHHHHHHHTT-SEEEEE-T....TSSTT--SSG...GGHHHHHHHHHHHH..HHHHTTS-TTSEEE..EEES-S--CCCH...... CS
  Meth_synt_2 146 aeaaaqialalrdevkdLeaaGikviQiDep....alreGlplkk...adwaayldwaveaf..rldtiaaaddtqvh..tHlCyselndil...... 226
                  +e  ++ia a + e+  L +aG+  iQiD+p    + +e ++ +    +++ + l++  +      + ++ ++  ++h  +H+C  ++          
   KKY23461.1 177 EEYFQDIAKAYQTELDILYEAGVRNIQIDDPnfayFCSEKMIKGWdddKSNIKTLEELLDTYiqCYNDCISKHTSKMHfgLHICRGNFMGSRhfsegg 274
                  567789*************************9887667777766532233334455544433113456667666666544799988886544556777 PP

                  ......HHHHTT--SEEEESBSSS-SSGGGGTTTT---SEEEEBSS-TTSSS--THHHHHHHHHCHHCT..........S-STSB-BB-SS-STTS.. CS
  Meth_synt_2 227 ......saiaaldvDvitieasrsdeellealeevkygrgvglGvydihsprvpsmeeiaalikkaldv..........apkerlwvnPdCGLktr.. 306
                        +  ++l+v    +e         e l +   +++v lGv+  + p  + + +++++i +a+d+          a  +r++v+P CG++    
   KKY23461.1 275 ydriavKLFTRLNVSTYYLEYDTPRAGGFEPLLHLPADKNVILGVITSKFPELEDKVKMKERIFAAADIiakgsgqtreAALDRIGVSPQCGFASHee 372
                  755455666799999999**99999999************************************************999889***********97511 PP

                  ....-HHHHHHHHHHHHHHH CS
  Meth_synt_2 307 ....kreearaalknmvdaA 322
                      ++e  +++l++++ +A
   KKY23461.1 373 gnllGWEDMKNKLRLVRSIA 392
                  22225667777777766666 PP

>> Meth_synt_1  Cobalamin-independent synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.6   7.2e+03      24      42 ..      30      48 ..      20      63 .. 0.45
   2 !   17.4   0.0   5.6e-07    0.0025     172     248 ..     175     251 ..     108     259 .. 0.83
   3 ?   -2.4   0.0      0.59   2.6e+03      69      97 ..     312     341 ..     310     351 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.6
                 HTTSS-HHHHHHHHHHHHH CS
  Meth_synt_1 24 wkgkiseeeLektakeLra 42
                  k+++s++e+ k  +e   
   KKY23461.1 30 EKKELSQQEVAKIEDESVD 48
                 3333333333333333333 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 5.6e-07
                  -HCHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSGCHHHHHHHHHHHHHHTCCTTTSEEEEE--SS-.CCHHH CS
  Meth_synt_1 172 eklellekLlpvYkelleeLkeagvewvqidEPalvldlekeelealkeaYeelakekkelklllatyFdsvaeale 248
                  + +e ++++ ++Y++ l+ L eagv+ +qid+P +++  +++ ++  ++  +++++ ++ l+ +++ y d ++++++
   KKY23461.1 175 SDEEYFQDIAKAYQTELDILYEAGVRNIQIDDPNFAYFCSEKMIKGWDDDKSNIKTLEELLDTYIQCYNDCISKHTS 251
                  456799*******************************9999999999988888877778888888888877777665 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.59
                  HHHHHTT---GGGT.T.SSSSSHHHHHHHH CS
  Meth_synt_1  69 dtavllgaiPerfk.leekkeeldtyFala 97 
                  d  v+lg+i ++f  le+k +  +++Fa a
   KKY23461.1 312 DKNVILGVITSKFPeLEDKVKMKERIFAAA 341
                  667899999999986666667777888866 PP

>> Phage_Orf51  Phage Conserved Open Reading Frame 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.5e-05      0.34      20      65 ..     194     240 ..     176     248 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.5e-05
  Phage_Orf51  20 lyqdnervahihvvngtyyfhghivpgwqgvkktfdtaeel.etyik 65 
                  ly+   r  +i   n +y+   +++ gw+  k  + t eel +tyi+
   KKY23461.1 194 LYEAGVRNIQIDDPNFAYFCSEKMIKGWDDDKSNIKTLEELlDTYIQ 240
                  7888888889999999**********************99549**97 PP

>> Myofilin  Myofilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.7e-05      0.26      16     126 ..      67     179 ..      61     198 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.7e-05
    Myofilin  16 skkakfwqsyvralkGsddiratekihtrprgifrpl....sdypdlawpssksiy.d.dpihaservkspGyryd..pvsrdtyG.lsprniyphnys 105
                  ++a fw s+   l G  +ir ++        ifrp+    + +++ ++  ++s     +  h++e   +  + y+   + ++ +G +    i p  y 
  KKY23461.1  67 YRRAVFWGSFFEELEGMTEIRNPD------IEIFRPYvpdiAGFLEKGHKPGQSCLcTgKIRHTGESTLVGQFNYLktKIPKERWGdIKMTMITPVWY- 158
                 589*********************......55666665555889998855455543131445777777777777752246788888445566777777. PP

    Myofilin 106 sdryrparyitprpydaekew 126
                   ry+ ++ +    y +++e+
  KKY23461.1 159 HLRYKDGNAFPKDVYASDEEY 179
                 567877775555557666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 2724.68
//
Query:       KKY23462.1  [L=460]
Description: putative aminotransferase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-19   68.1   0.0    1.4e-18   67.0   0.0    1.4  1  Aminotran_5  Aminotransferase class-V
  ------ inclusion threshold ------
       0.12   11.1   0.0       0.18   10.4   0.0    1.2  1  SepSecS      O-phosphoseryl-tRNA(Sec) selenium transferase, S


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   1.6e-22   1.4e-18      39     205 ..      60     233 ..      34     234 .. 0.86

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 1.6e-22
                  HHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH- CS
  Aminotran_5  39 keatkaveearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekll 136
                   +a++ +++are  a ++n++s +e++f++++t+++n+v+++l    +p d i+  ++ + a   ++  +  +t+  +k  ++d e     +++ ++ 
   KKY23462.1  60 YDAYDLLDKAREAAASVVNVPS-SELVFIHNATTGVNTVLRNL--VYEPNDAIIWFDTIYGACNKTILSVL-ETNPGLKACKVDYELPCSFEKIVQNF 153
                  578999***************9.********************..57*******98887766555666665.57888888888888888877666666 PP

                  ..........-TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTT.TTSS CS
  Aminotran_5 137 ..........nektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghK.llgP 205
                              k+k+  +  + +v G+ +p+e ++ +++++g++ ++Daa a+g+ip+d++kl++Df+++ +hK +++P
   KKY23462.1 154 rdvvkdarskGLKPKVAVFDTIVSVPGVRFPFELLTVACREEGIYSCLDAAHAIGQIPLDLSKLDADFFVSNSHKwFYAP 233
                  566677776556899************************************************************99999 PP

>> SepSecS  O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0     2e-05      0.18     200     243 ..     196     239 ..     190     246 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 2e-05
                 HHHHHHHHHHHHTTC-EECCCHCHCCCEECCHCCCCESSCHCCC CS
     SepSecS 200 kyieklkkalkvGRvdvvvksldknllvpvGgaiiaasdesfik 243
                  + + l++a+ +G ++  +++ld++++v   ++  +a+ +s i 
  KKY23462.1 196 GIYSCLDAAHAIGQIPLDLSKLDADFFVSNSHKWFYAPRPSAIF 239
                 55677999******************************999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 2964.47
//
Query:       KKY23463.1  [L=566]
Description: putative arginine permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.1e-123  411.2  37.1   6.3e-123  410.9  37.1    1.0  1  AA_permease    Amino acid permease
    1.2e-32  113.3  38.0    1.7e-32  112.8  38.0    1.1  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  410.9  37.1    7e-127  6.3e-123       1     473 [.      64     528 ..      64     531 .. 0.98

  Alignments for each domain:
  == domain 1  score: 410.9 bits;  conditional E-value: 7e-127
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ialgg iGtglf+g+g +  qaGpl++ll+y ++gv +f +m++lge+at  p  g++ ++ +r+ +++lGf++G+n ++s  ++l +e++aas
   KKY23463.1  64 HIQFIALGGTIGTGLFLGIGRAFTQAGPLSVLLGYTFTGVAVFSMMQCLGEMATWLPLPGAIPQFCARYCDDALGFAVGWNNWYSCSITLCAEIAAAS 161
                  9************************************************************************************************* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeee 195
                  ++i++w+   d++   +++++++v+++ +n+++v  ygeaefi+a+iki++i++++i+ +i+  gg+p +g+ gf++++d+g+ +k+++ +g    ++
   KKY23463.1 162 SIIGYWNGAADIN-VAAWISILIVLVVSLNIFAVSIYGEAEFIFASIKIVTIVGLLILAFIIDLGGAPGQGRlGFHYWKDPGA-MKAYIDSG----DS 253
                  *************.*********************************************************************.66666666....99 PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.....aspfvifikesgvsvl 288
                  g+f++  s +v ++f++ G e+va++agE+++P+k+iPka+++v++ri++fY+l++l+ig+l+p+nd  ll+++ +       sp vi+i+ +g++vl
   KKY23463.1 254 GRFLGLWSTLVNAAFSYGGVEMVAVAAGEAENPRKNIPKAVRRVFWRILFFYILGSLAIGVLIPYNDERLLSAIEDDsvgaaQSPWVIAIVRAGIPVL 351
                  ************************************************************************88777999****************** PP

  AA_permease 289 aplinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliils 386
                  +++inavilt+a s+an++ly++sR ++ la+++ aP++l k++k gvP+  +++++ isll ++  s+ ++   +f+++ +++++++l++w++i+++
   KKY23463.1 352 PSIINAVILTSASSAANAFLYTGSRYMFGLAQNRQAPRFLLKCTKTGVPIWCVAITASISLLTYMSCSSGSS--AAFTWFQNLTTISTLFTWVSILTC 447
                  ****************************************************************88888888..************************ PP

  AA_permease 387 ylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknk 473
                  y+ fRkal +q+ + + l fk+  +p+ ++ +l+++++i+ ++++ a++       +w++ +f+  y++v+++  +++ +k+++++k
   KKY23463.1 448 YIQFRKALIAQNVDRNTLIFKSKWQPYQAYGALIFFSLIIFFNGFDAIAG------SWQYKDFITDYIGVPIYFGLFFFWKIFKRTK 528
                  **********************************************9999......**********************999999975 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.8  38.0   1.9e-36   1.7e-32       8     403 ..      67     492 ..      61     515 .. 0.78

  Alignments for each domain:
  == domain 1  score: 112.8 bits;  conditional E-value: 1.9e-36
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaas 101
                    ++++g +ig+g f     +++ +gp+++l + +++++ +++++ ++ E+++ lp  g i  + ++ +   ++f ++w nw++ +++l++ +++a s
     KKY23463.1  67 FIALGGTIGTGLFLGIgrAFTQAGPLSVLLGYTFTGVAVFSMMQCLGEMATWLPLPGAIPQFCARYCDDALGFAVGWNNWYSCSITLCAEIAAASS 162
                    899**********998988999***9888888888888899**********************************************887777777 PP

  AA_permease_2 102 yllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.stetdtffpngwpgv...... 190
                     + + +++  + n   +   ++++++lv+ +ni+++++++ + +i + +ki+ +++ l+il++i+ d gg++ +     +++   g +        
     KKY23463.1 163 IIGY-WNGAADIN---VAAWISILIVLVVSLNIFAVSIYGEAEFIFASIKIV-TIVGLLILAFII-DLGGAPGQgRLGFHYWKDPGAMKAyidsgd 252
                    7777.66543333...44445677889999*********************6.665555566666.556666555334444433333321122333 PP

  AA_permease_2 191 .......llgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddei........anlsnlgsvaalffeavgg 269
                           +++l  +++s++G+e++a+ + e+++  k++pka   ++  +l++y+l ++a+   +p +          ++++   s++ +   ++g 
     KKY23463.1 253 sgrflglWSTLVNAAFSYGGVEMVAVAAGEAENprKNIPKAVRRVFWRILFFYILGSLAIGVLIPYNDErllsaiedDSVGAAQSPWVIAIVRAGI 348
                    4455666999999*****************7776589*******************9999999998555478755443333333346666666666 PP

  AA_permease_2 270 kvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisylll 365
                    +v+ +i++++i  s+  a+n+++++ sr+++ la+ +  Prf+ k  k+g pi ++ +ta +sl+ ++ ++ +ssaa+++  ++++++ ++ +  +
     KKY23463.1 349 PVLPSIINAVILTSASSAANAFLYTGSRYMFGLAQNRQAPRFLLKCTKTGVPIWCVAITASISLLTYMSCSSGSSAAFTWFQNLTTISTLFTWVSI 444
                    7**************************************************************99999999888*******************999 PP

  AA_permease_2 366 iigalilrkkrphl..kr.....pgki.lvaiig..alfllfllvalf 403
                    +++++  rk    +   r     + k+ +  + g  ++f+l++++++f
     KKY23463.1 445 LTCYIQFRKALIAQnvDRntlifKSKWqPYQAYGalIFFSLIIFFNGF 492
                    999999998744332233457753334444444411666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 3474.92
//
Query:       KKY23464.1  [L=295]
Description: putative coatomer subunit epsilon [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-56  190.3   7.4    5.5e-56  190.1   7.4    1.0  1  Coatomer_E  Coatomer epsilon subunit
      5e-06   26.9  13.5      0.005   17.3   2.7    4.0  5  TPR_19      Tetratricopeptide repeat
    1.6e-05   25.1   5.8      0.088   13.1   0.2    3.5  4  TPR_12      Tetratricopeptide repeat
    0.00017   22.2   8.6       0.06   14.0   0.3    4.0  4  TPR_16      Tetratricopeptide repeat
    0.00024   21.0   2.7       0.68   10.2   0.0    4.3  4  TPR_2       Tetratricopeptide repeat
    0.00045   20.4   1.7       0.15   12.3   0.5    2.8  3  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
    0.00049   20.5   0.8        0.9   10.3   0.0    3.5  3  TPR_6       Tetratricopeptide repeat
    0.00068   20.2  10.4        1.2   10.1   0.3    4.9  4  TPR_14      Tetratricopeptide repeat
     0.0071   16.9   1.0       0.16   12.7   0.2    3.6  3  TPR_4       Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.02   14.7   0.1         14    5.7   0.0    3.1  3  TPR_1       Tetratricopeptide repeat
      0.023   14.5   0.3        4.1    7.4   0.1    3.1  2  TPR_10      Tetratricopeptide repeat
       0.87   10.0   7.9        0.5   10.7   0.2    2.8  3  TPR_20      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Coatomer_E  Coatomer epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.1   7.4   3.7e-59   5.5e-56       4     289 ..       9     290 ..       6     291 .. 0.94

  Alignments for each domain:
  == domain 1  score: 190.1 bits;  conditional E-value: 3.7e-59
                 TTHHHHHHHHTT-HHHHHHHHHS---SHHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS-HHHHHHHHHHHHHH-STTHHHHHHHHHHHHHS----S-H CS
  Coatomer_E   4 eLfdvrnefYlGaYqkaineadvaslseeekeerdvylyrsylAlgsaqiviseIkesaatelqAvrllaeylnspsrkeeilaelkeeladseiesne 102
                 eL ++  +fY   Y+++i e d++  s+e+k+   ++  r+ +A g+a  v++e   ++++e  Av++la+  + p ++ ++l+   eela++   +n+
  KKY23464.1   9 ELINILTAFYQSQYTTVI-EFDTSAFSDESKTAASILKLRARIASGDAASVLKES--DSSPEATAVKALAQS-SLPGQTSSALSA-AEELAENYP-ENA 101
                 7889999***********.8*********************************97..789**********86.567889999876.577887776.788 PP

                 HHHHHHHHHHHHTT-HHHHHHHHTT-.-SHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHS.-- CS
  Coatomer_E 103 vlrllaaivflkegdfddalkllkks.enLeavAlkvqillklhrvdlAekelkkmqdidedatltQLAqawvklavggekiqdAyyifqelseky.ks 199
                 ++++  ++v+  ++++d+al+ll+k  +nLeavAl vqi+l  +r+dlA ke++ ++ +++d+ +  LA+awv l vggek+q  +y+++el+     s
  KKY23464.1 102 TVQVCCGTVLAANEKYDEALNLLNKHqGNLEAVALIVQIHLIQNRTDLALKEVQAAKRWAQDNLVINLAEAWVGLRVGGEKYQSTFYVYEELASAPsTS 200
                 ***********************99989****************************************************************9983133 PP

                 -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHHHH CS
  Coatomer_E 200 tplllngkAvvslllgryeeAeslLkeaLdkdakdeetLiNlvvaaqhlgkdaevsernlsqlklshpehklvkdlnekeaeFdrlvlqf 289
                  +  l g+Av +++lgr  eAe  L++ L + + d+e+++N++v+a + g     +e  ++ lk++ +eh l kdl+ek+  Fd + +++
  KKY23464.1 201 STTALIGQAVSEIHLGRLPEAEAALQQVLASAEADPEAIANSIVLASLQGNKLSETEALIERLKTAGSEHALLKDLEEKSSLFDEAKTKY 290
                 456799******************************************************************************999887 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       1.1   1.7e+03       9      10 ..      54      55 ..      16      77 .. 0.52
   2 ?    3.2   0.7     0.087   1.3e+02      17      61 ..      58     103 ..      46     112 .. 0.72
   3 !   10.0   1.9   0.00064      0.96       5      50 ..      81     126 ..      73     127 .. 0.94
   4 !   17.3   2.7   3.4e-06     0.005       1      59 [.     111     164 ..     111     172 .. 0.93
   5 !   11.6   0.1   0.00021      0.31      28      61 ..     205     238 ..     181     243 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.1
      TPR_19  9 eA 10
                +A
  KKY23464.1 54 DA 55
                33 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.087
      TPR_19  17 alqedpknaearllLAeallal.gqldeAealLdalpeedpddary 61 
                 +l+e+  ++ea +  A a+ +l gq+  A  + ++l e +p +a +
  KKY23464.1  58 VLKESDSSPEATAVKALAQSSLpGQTSSALSAAEELAENYPENATV 103
                 4455666777777777777777777777777777777777776655 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00064
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLda 50 
                 g+  +Al++ e++ + +p+na ++     +l a+  +deA +lL++
  KKY23464.1  81 GQTSSALSAAEELAENYPENATVQVCCGTVLAANEKYDEALNLLNK 126
                 78999*******9999*********99*****************85 PP

  == domain 4  score: 17.3 bits;  conditional E-value: 3.4e-06
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdda 59 
                 l a+++y+eAl+ll +      +n+ea +l ++++l ++++d A + ++a+ ++++d  
  KKY23464.1 111 LAANEKYDEALNLLNK----HQGNLEAVALIVQIHLIQNRTDLALKEVQAAKRWAQD-N 164
                 57899***********....9***********************************9.4 PP

  == domain 5  score: 11.6 bits;  conditional E-value: 0.00021
      TPR_19  28 rllLAeallalgqldeAealLdalpeedpddary 61 
                 +++ A   + lg+l eAea+L+++++++  d+++
  KKY23464.1 205 LIGQAVSEIHLGRLPEAEAALQQVLASAEADPEA 238
                 5555677799****************99998764 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.2   5.9e-05     0.088      29      70 ..      86     126 ..      82     133 .. 0.89
   2 ?   -0.9   0.0       1.4   2.1e+03      10      33 ..     138     161 ..     131     166 .. 0.68
   3 !   12.3   0.2   0.00011      0.16      32      76 ..     189     233 ..     180     234 .. 0.55
   4 !   12.4   0.2   9.7e-05      0.14       4      36 ..     203     235 ..     200     258 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.9e-05
      TPR_12  29 aleiarrllGpdhpltattlrnLgrlyralgryeeAlellee 70 
                 al +a++l  +++p+ at++   g+++ a ++y+eAl+ll++
  KKY23464.1  86 ALSAAEEL-AENYPENATVQVCCGTVLAANEKYDEALNLLNK 126
                 78888777.6899**************************997 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.4
      TPR_12  10 aavlrrlgrydeAlellekaleia 33 
                  ++++ + r d Al+  ++a + a
  KKY23464.1 138 VQIHLIQNRTDLALKEVQAAKRWA 161
                 566777777888887777776555 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 0.00011
      TPR_12  32 iarrllGpdhpltattlrnLgrly..ralgryeeAlelleealaiae 76 
                 ++++l     p t++t   +g++     lgr+ eA+++l+++la ae
  KKY23464.1 189 VYEEL--ASAPSTSSTTALIGQAVseIHLGRLPEAEAALQQVLASAE 233
                 55555..3344444444444444310466777777777777777665 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 9.7e-05
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrl 36 
                 tal   a+ + +lgr+ eA++ l+++l+ a++ 
  KKY23464.1 203 TALIGQAVSEIHLGRLPEAEAALQQVLASAEAD 235
                 466678889999999999999999999988654 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       2.1   3.1e+03      36      54 ..      48      66 ..      45      79 .. 0.56
   2 !    9.1   0.1    0.0014       2.1      12      62 ..      82     129 ..      81     135 .. 0.89
   3 ?    6.1   0.2     0.012        18       5      65 ..     109     161 ..     108     164 .. 0.76
   4 !   14.0   0.3     4e-05      0.06      29      68 .]     198     236 ..     190     267 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.1
      TPR_16 36 AllllgdaalrqgrlaeAa 54
                A+ ++gdaa ++++ +   
  KKY23464.1 48 ARIASGDAASVLKESDSSP 66
                5556666666665544443 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0014
      TPR_16  12 dyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalr 62 
                 +   A+ a+e++ +++   P++a  +   g +++++  ++eA+ l++++++
  KKY23464.1  82 QTSSALSAAEELAENY---PENATVQVCCGTVLAANEKYDEALNLLNKHQG 129
                 56689***********...************************88888776 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.012
      TPR_16   5 raalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 + ++++ +yd+A+++l     ++     + eA  l  +++l q+r ++A+  ++aa + ++
  KKY23464.1 109 TVLAANEKYDEALNLL----NKH---QGNLEAVALIVQIHLIQNRTDLALKEVQAA-KRWA 161
                 5678899999999555....666...778889999999999999999999888777.5555 PP

  == domain 4  score: 14.0 bits;  conditional E-value: 4e-05
      TPR_16  29 ssPdaaeAllllgdaalrqgrlaeAaalyraalraapdap 68 
                 s++    Al + +++  ++grl+eA+a+++  l+ a  +p
  KKY23464.1 198 STS-STTALIGQAVSEIHLGRLPEAEAALQQVLASAEADP 236
                 554.566777777777777777777766666664444443 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.82   1.2e+03      16      34 .]      82     100 ..      81     100 .. 0.84
   2 !    6.5   0.0    0.0069        10       6      26 ..     106     126 ..     101     126 .. 0.84
   3 ?   -0.2   0.1      0.96   1.4e+03      10      30 ..     140     160 ..     139     164 .. 0.77
   4 !   10.2   0.0   0.00046      0.68       3      30 ..     204     231 ..     203     235 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.82
       TPR_2  16 dyeeAleafekAleldPnn 34 
                 +   Al a e+  e +P+n
  KKY23464.1  82 QTSSALSAAEELAENYPEN 100
                 6667999999*99999987 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0069
       TPR_2   6 nlGlayyklgdyeeAleafek 26 
                 + G +++++ +y+eAl++++k
  KKY23464.1 106 CCGTVLAANEKYDEALNLLNK 126
                 5688999*********99886 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.96
       TPR_2  10 ayyklgdyeeAleafekAlel 30 
                 +++ +++ + Al+  ++A + 
  KKY23464.1 140 IHLIQNRTDLALKEVQAAKRW 160
                 788899999999999888665 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00046
       TPR_2   3 alynlGlayyklgdyeeAleafekAlel 30 
                 al  ++ + ++lg++ eA++a++++l+ 
  KKY23464.1 204 ALIGQAVSEIHLGRLPEAEAALQQVLAS 231
                 678899999****************985 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.6   0.00011      0.17      21      81 ..      64     126 ..      41     127 .. 0.81
   2 !   12.3   0.5    0.0001      0.15       4      54 ..      82     129 ..      80     159 .. 0.62
   3 ?    5.5   0.0     0.013        19      38      81 ..     182     227 ..     180     228 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
                 --HHHHHHHHHHHHHT.T-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  21 espedayllAlclyln.gqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                  spe++  +Al+  ++ gq  +A+  ++++ + ++++  + ++++ +l + +ky+eA+++L k
  KKY23464.1  64 SSPEATAVKALAQSSLpGQTSSALSAAEELaENYPENATVQVCCGTVLAANEKYDEALNLLNK 126
                 5666666666665443389999999999999999999999999999999999****9999987 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.0001
                 -HHHHHHHHHHHH.HHH--HHHHHHH..HHHHHHTT-HHHHHHHHHCTSHHHC CS
      ANAPC3   4 nyknAiflaerllaaetespedayll..AlclylngqykrAyellrkaklnsk 54 
                 ++ +A+  ae l   e++ ++++     + +l  n++y++A++ll+k++    
  KKY23464.1  82 QTSSALSAAEELA--ENYPENATVQVccGTVLAANEKYDEALNLLNKHQ---G 129
                 5667777788887..5555555444344888888888888888888883...3 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.013
                 -HHHHHHHHHCTSHHHC-HHHHHHHH..HHHHHTT-HHHHHHHH-S CS
      ANAPC3  38 qykrAyellrkaklnskslgcrylfA..qcllkLkkyeeAiaaLek 81 
                 +y++ +++++++ +++++     l++   + + L+++ eA+aaL+ 
  KKY23464.1 182 KYQSTFYVYEELASAPSTSSTTALIGqaVSEIHLGRLPEAEAALQQ 227
                 8999999999995555555555555511556999**********86 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0006       0.9       8      32 ..      74      99 ..      69     100 .. 0.83
   2 ?   -1.0   0.0       2.4   3.6e+03      14      25 ..     115     126 ..     108     126 .. 0.72
   3 !    6.5   0.0    0.0096        14       2      28 ..     204     230 ..     203     232 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0006
                HHHHHH.HHHHHHHHHHHHHHHH-TT CS
       TPR_6  8 lsyrkl.gdtdkAlealerlikeYPd 32
                l++ +l g+t+ Al a e+l ++YP+
  KKY23464.1 74 LAQSSLpGQTSSALSAAEELAENYPE 99
                45555567*****************7 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.4
                 HHHHHHHHHHHH CS
       TPR_6  14 gdtdkAlealer 25 
                  ++d+Al +l++
  KKY23464.1 115 EKYDEALNLLNK 126
                 3899**999875 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0096
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlik 28 
                 Al  +a s + lg+  +A +al++++ 
  KKY23464.1 204 ALIGQAVSEIHLGRLPEAEAALQQVLA 230
                 77889******99***********986 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.026        39       8      38 ..      73     104 ..      66     108 .. 0.76
   2 ?    5.1   0.0     0.034        50       6      26 ..     106     126 ..     103     128 .. 0.87
   3 ?    3.5   0.4      0.11   1.7e+02       2      41 ..     132     169 ..     131     173 .. 0.77
   4 !   10.1   0.3   0.00082       1.2      11      38 ..     212     239 ..     203     248 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.026
      TPR_14   8 aeallal.GdpdeAiallrralalaPddaeaw 38 
                 a a   l G++  A+ +++++ + +P++a+++
  KKY23464.1  73 ALAQSSLpGQTSSALSAAEELAENYPENATVQ 104
                 3333333599******************9987 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.034
      TPR_14   6 alaeallalGdpdeAiallrr 26 
                 + + +l+a++++deA++ll++
  KKY23464.1 106 CCGTVLAANEKYDEALNLLNK 126
                 56889*************985 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.11
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlll 41 
                 ea +++++++l + ++d A++  ++a  + ++++ + + l
  KKY23464.1 132 EAVALIVQIHLIQNRTDLALKEVQAA--KRWAQDNLVINL 169
                 7888999*****************99..445555555555 PP

  == domain 4  score: 10.1 bits;  conditional E-value: 0.00082
      TPR_14  11 llalGdpdeAiallrralalaPddaeaw 38 
                 + +lG++ eA+a+l+++la a +d+ea 
  KKY23464.1 212 EIHLGRLPEAEAALQQVLASAEADPEAI 239
                 6799***************999999875 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.8   2.6e+03       5      24 ..     105     124 ..     101     126 .. 0.76
   2 ?   -1.6   0.1       4.2   6.3e+03       5      12 ..     167     174 ..     165     176 .. 0.77
   3 !   12.7   0.2   0.00011      0.16       3      26 .]     204     227 ..     202     227 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.8
       TPR_4   5 laLArallalGdldeArall 24 
                 +  + +l+a   +deA+ ll
  KKY23464.1 105 VCCGTVLAANEKYDEALNLL 124
                 55677888888899999887 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4.2
       TPR_4   5 laLArall 12 
                 ++LA+a+ 
  KKY23464.1 167 INLAEAWV 174
                 68999975 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 0.00011
       TPR_4   3 allaLArallalGdldeAraller 26 
                 al+++A    +lG+l+eA+a+l++
  KKY23464.1 204 ALIGQAVSEIHLGRLPEAEAALQQ 227
                 89999****************987 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.013        19       8      26 ..     108     126 ..     105     127 .. 0.87
   2 ?   -2.7   0.0       4.2   6.3e+03      10      22 ..     140     152 ..     139     152 .. 0.83
   3 ?    5.7   0.0    0.0091        14       4      28 ..     205     229 ..     203     232 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.013
                 HHHHHHTT-HHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyek 26 
                 G ++  ++kydeAl   +k
  KKY23464.1 108 GTVLAANEKYDEALNLLNK 126
                 7789999*******88776 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.2
                 HHHHTT-HHHHHH CS
       TPR_1  10 ayfklgkydeAle 22 
                 +++ +++ d Al+
  KKY23464.1 140 IHLIQNRTDLALK 152
                 7888999999996 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0091
                 HHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekAL 28 
                 l + ++   +lg++ eA+++ +++L
  KKY23464.1 205 LIGQAVSEIHLGRLPEAEAALQQVL 229
                 5666777789*************99 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.039        58       9      25 ..     108     124 ..     107     126 .. 0.88
   2 ?    7.4   0.1    0.0027       4.1      14      33 ..     214     233 ..     209     234 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.039
      TPR_10   9 analrqrgrydeAeall 25 
                 + +l +  +ydeA++ll
  KKY23464.1 108 GTVLAANEKYDEALNLL 124
                 67899999*******97 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0027
      TPR_10  14 qrgrydeAealleealairr 33 
                 ++gr+ eAea l+++la  +
  KKY23464.1 214 HLGRLPEAEAALQQVLASAE 233
                 58**************9876 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00033       0.5       5      45 ..      84     124 ..      81     130 .. 0.92
   2 ?   -3.3   0.1         8   1.2e+04      24      37 ..     145     158 ..     143     165 .. 0.64
   3 ?    3.0   0.8     0.089   1.3e+02       5      42 ..     222     259 ..     219     281 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00033
      TPR_20   5 apelaeleaalaanpddldarldlAlallaagryeeAleqL 45 
                 +  l++ e+ +++ p++   ++   ++l+a+++y+eAl++L
  KKY23464.1  84 SSALSAAEELAENYPENATVQVCCGTVLAANEKYDEALNLL 124
                 567899999******************************98 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 8
      TPR_20  24 arldlAlallaagr 37 
                  r dlAl+ ++a +
  KKY23464.1 145 NRTDLALKEVQAAK 158
                 56667776666654 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.089
      TPR_20   5 apelaeleaalaanpddldarldlAlallaagryeeAl 42 
                 ++ l+++ a ++a+p+ ++  + lA ++  +  + eAl
  KKY23464.1 222 EAALQQVLASAEADPEAIANSIVLASLQGNKLSETEAL 259
                 56789999999999999999999999887777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1901.28
//
Query:       KKY23465.1  [L=235]
Description: putative pyrimidine 5nucleotidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-09   38.2   0.0    2.1e-09   37.7   0.0    1.2  1  HAD_2           Haloacid dehalogenase-like hydrolase
    8.1e-07   29.5   0.0    7.5e-05   23.1   0.0    2.2  1  Hydrolase       haloacid dehalogenase-like hydrolase
     0.0018   18.3   0.0     0.0029   17.6   0.0    1.3  1  Hydrolase_like  HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   3.6e-13   2.1e-09       3     176 ..      17     198 ..      15     200 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 3.6e-13
       HAD_2   3 FDlDgTlldteeliiqafnelleeygls..elseeelrkliglslrellrklgeseeeee.kieellrkyneekkk.kevkpydgvkelLeeLkeagyk 97 
                 FD+D+ l+ +++ ++q ++el++++ +    ls e+   l +  ++e+   ++   + ++ +  e+ r++ + +   + ++p  +++++Le+  + ++k
  KKY23465.1  17 FDIDNCLYSKSKKVFQLMQELIDSFFVRhlALSAEDALMLHHKYYKEYGLAIEGLARHHKiSPLEFNREVDDALPLdEVLHPDLELRQFLENFDRTKVK 115
                 *************************7774444555555555555555554444444433334444555555544335899999**************** PP

       HAD_2  98 lgivTsksreaveekleqlgiesyFdvivtsedvekk...KPdpeviekaleklkl.kkeeviyvGDsptDieaakkagikvi 176
                 l + T+ +     + ++ lgi+++F+ i   + + +    KP++e++eka ++ k+ +++++++v Ds    + a++ g +++
  KKY23465.1 116 LWLFTNAHITHGSRVVKLLGIDDLFEGITYCDYAAETllcKPAAEMFEKAEKEAKApSSSQCFFVDDSALNCKHAQQRGWETA 198
                 ******************************9999998899************998835678999**********999998775 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.3e-08   7.5e-05      59     200 ..      59     184 ..      13     194 .. 0.66

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.3e-08
                 HHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH.TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  59 gfatfigrgayaigkpewltaldippdlgaaigsaqsqgrtvall.qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG 156
                 +                      +++++g ai+ + ++++++ l+ + +++  + + + l +  e++++++ + + +++++l t+ + ++  r+ + lG
  KKY23465.1  59 K----------------------YYKEYGLAIEGLARHHKISPLEfNREVDDALPLDEVLHPDLELRQFLENFDRTKVKLWLFTNAHITHGSRVVKLLG 135
                 2......................23333333333333333333333445555666666655677888******************************** PP

                 .GGGE.SEEEEHHCES..STTTSHHHHHHHHHHHTST.GGGEEEEESSH CS
                 .xxxx.xxxxxxxxxx..xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
   Hydrolase 157 .ddyf.daviasdiet..vakpspegkvaaireLqgk.peevamVGDgv 200
                  dd f  ++++ +  +    kp  e++++a +e +++  +++ +V+D++
  KKY23465.1 136 iDDLFeGITYCDYAAEtlLCKPAAEMFEKAEKEAKAPsSSQCFFVDDSA 184
                 *****666666666558*****************955599*******96 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.8e-07    0.0029       4      65 ..     156     217 ..     153     223 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.8e-07
                     TTSSHHHHHHHHHH---.GGGEEEEES-TTTHHHHHHHCT-EE.EEESSSSS-TTTHHHHHHHH CS
  Hydrolase_like   4 KPepemydfalevlgsd.peevlmiGDrlatDiagAnnaGwks.vLVltGvtrpedleepehkp 65 
                     KP++em++ a ++ +++ +++++++ D+ a   + A++ Gw++  LV  G  +p++ ++ +++ 
      KKY23465.1 156 KPAAEMFEKAEKEAKAPsSSQCFFVDDS-ALNCKHAQQRGWETaHLVEKGEPQPAA-KASKYQI 217
                     **************9986889*******.**************679*****99987.4344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1614.92
//
Query:       KKY23466.1  [L=1421]
Description: putative efflux pump antibiotic resistance [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-29  100.6  49.0    3.4e-28   98.6  49.0    1.9  1  MFS_1            Major Facilitator Superfamily
    8.3e-07   28.2  13.8    8.3e-07   28.2  13.8    2.3  2  Sugar_tr         Sugar (and other) transporter
     0.0049   16.6   6.3     0.0049   16.6   6.3    2.5  2  Cation_ATPase_C  Cation transporting ATPase, C-terminus
  ------ inclusion threshold ------
      0.028   14.4   0.1      0.056   13.4   0.1    1.4  1  GPAT_N           Glycerol-3-phosphate acyltransferase N-termi


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.6  49.0   7.5e-32   3.4e-28       2     333 ..     925    1308 ..     924    1331 .. 0.82

  Alignments for each domain:
  == domain 1  score: 98.6 bits;  conditional E-value: 7.5e-32
       MFS_1    2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGl 97  
                  l++afl++l+ +i++ +    + e+lg   s i ++ +++ lg+a ++lp+G    +f  + ++l++l++f +g++++   +++  +l+++rv++G+
  KKY23466.1  925 LCCAFLYGLDTTIAADVQA-SIYESLG-EISKIAWVGVGFPLGSAGTILPIGMAFGKFNQKTLFLISLVIFEVGSTVCGA-APSMdALIWGRVIAGI 1018
                  7999*****9999777777.999****.**********************************************777773.55566*********** PP

       MFS_1   98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeee..... 188 
                  g+++++ +g+ +++ +++ +er+ +++++++ +++G++lgp++gg +a ss++Wr++fyi+  +++l +   l+ +   pp  +r+    +e     
  KKY23466.1 1019 GGSGIYLGGLNFVTVYTTAKERSIYTAFIGLVWAVGTVLGPVIGGGFAsSSASWRWAFYINVCLFALIGPANLFCM---PPYDPRPDLSLKErfkkm 1112
                  ************************************************9******************999433444...333333322222234588 PP

       MFS_1  189 .......................................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltll 230 
                                                                           t   +++p+w + +++ vl  + i++++++++f+ l+++l
  KKY23466.1 1113 dwvgsvliagvfvtfilafslagnqwdwddgrwiammvvfgillisfcvqqayalFTTRDEQIFPVWFLKRRSMVL--FYITMAGGGTCFFVLVYYL 1207
                  *****************************************99999996555555444444444488888888888..8888889999********* PP

       MFS_1  231 plylqevlgls...glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllll.vlvliGfglgfvfpslla 323 
                  ply+q+ +  s   +++ ++  +a++ +v++i+  l g l+  +g   ++++  ++++++  +++ +  +++++  ++ ++v++ +g+g+      a
  KKY23466.1 1208 PLYFQFAHSDSaikAAVRLL--PAIVVAVSFIM--LQGGLLPVIGYYSFWYILSGIFIVVGGCVMHIVEPDTPTSRVYgFSVILAIGVGLSGQGGYA 1300
                  ***88888888544334444..55555555555..***********************************888888887777777788888666666 PP

       MFS_1  324 lasdlappee 333 
                  la+  a  ++
  KKY23466.1 1301 LAAAKA--RN 1308
                  666666..33 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2  13.8   1.9e-10   8.3e-07      47     179 ..     954    1081 ..     919    1096 .. 0.86
   2 ?   -4.3   2.9       1.4   6.3e+03      79     118 ..    1254    1293 ..    1200    1295 .. 0.70

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.9e-10
                  HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHH CS
    Sugar_tr   47 lsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsly 143 
                   + ++   f +G++ + l +g++  +f  k  +li+ v+f +g+ +++aa+   s+ +li gRv++Gig  +++     ++  ++++k R++ + + 
  KKY23466.1  954 KIAWVGVGFPLGSAGTILPIGMAFGKFNQKTLFLISLVIFEVGSTVCGAAP---SMDALIWGRVIAGIGGSGIYLGGLNFVTVYTTAKERSIYTAFI 1047
                  4566666788999999999********************************...******************************************* PP

                  HHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHH CS
    Sugar_tr  144 qlaitfGilvaaifglglnktsnadgwrillglqlv 179 
                   l +++G +++ ++g g++ +s++  wr+ +++++ 
  KKY23466.1 1048 GLVWAVGTVLGPVIGGGFASSSAS--WRWAFYINVC 1081
                  *******************99995..5555555433 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 1.4
                  HHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHH CS
    Sugar_tr   79 lliaavlfvigavlqaaakgknsvevlivgRvlvGigvGl 118 
                  ++ ++++ v+g++++++ + ++ +  ++   v++ igvGl
  KKY23466.1 1254 YILSGIFIVVGGCVMHIVEPDTPTSRVYGFSVILAIGVGL 1293
                  4668888889999999988888888888888888888886 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   6.3   1.1e-06    0.0049      37     172 ..    1095    1235 ..    1083    1244 .. 0.74
   2 ?   -1.9   0.4      0.51   2.3e+03      56     100 ..    1256    1334 ..    1236    1351 .. 0.41

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.1e-06
  Cation_ATPase_C   37 pPrkkkepliskkmlrriliqgllqalvtllvffltlllf..gisekenkls.snyaqtmaFitlvlsqifnalnlrsrreslfkfsglfsn 125 
                       pP++++  l  k+ ++++ ++g ++++ ++++f+l+++l   +++ ++  ++  ++   + +i++ + q   ++++r   e++f+++ l++ 
       KKY23466.1 1095 PPYDPRPDLSLKERFKKMDWVGSVLIAGVFVTFILAFSLAgnQWDWDDGRWIaMMVVFGILLISFCVQQAYALFTTRD--EQIFPVWFLKRR 1184
                       888899999999999999999999999999999999996522444444444478888889999999999999999999..99***8888888 PP

  Cation_ATPase_C  126 kllllaillslllqvlivyvpglnavfgtapl....sleewlialllalvv 172 
                        ++l+ i+++ + ++++v+v +l  +f++a       +   l+ +++++v+
       KKY23466.1 1185 SMVLFYITMAGGGTCFFVLVYYLPLYFQFAHSdsaiKAAVRLLPAIVVAVS 1235
                       888888888889999999998888888888542111222223334444444 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.51
  Cation_ATPase_C   56 iqgllqalvtllvffltll.............................lfgisekenkls...............snyaqtmaFitlvl 100 
                       + g+++++ + +++++ +                                         +               +++  ++a   +v 
       KKY23466.1 1256 LSGIFIVVGGCVMHIVEPDtptsrvygfsvilaigvglsgqggyalaaA----------KarnmseinysvgfmnIAQIGSVAIALCVS 1334
                       4444444444444444444333332222222222222222221111110..........011222222223333333333333333333 PP

>> GPAT_N  Glycerol-3-phosphate acyltransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.2e-05     0.056      42      72 ..    1368    1398 ..    1357    1400 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.2e-05
      GPAT_N   42 knAVlqsGipkAdeivlsnmavvlDrvlLdv 72  
                  k AVlqsG+++ +e+ +  ++ ++D+v ++v
  KKY23466.1 1368 KSAVLQSGDQEVREAAVRAITHAIDKVYIQV 1398
                  89**************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       950  (0.0529868); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.51
# Mc/sec: 8329.85
//
Query:       KKY23467.1  [L=123]
Description: hypothetical protein UCRPC4_g02915 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 881.50
//
Query:       KKY23468.1  [L=650]
Description: putative alpha-l-arabinofuranosidase a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.2e-24   84.4   0.6    1.9e-23   83.4   0.6    1.6  1  Alpha-L-AF_C  Alpha-L-arabinofuranosidase C-terminal domain
  ------ inclusion threshold ------
      0.073   12.8   0.0       0.15   11.7   0.0    1.4  1  DUF3879       Domain of unknown function, E. rectale Gene des


Domain annotation for each model (and alignments):
>> Alpha-L-AF_C  Alpha-L-arabinofuranosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.6   2.1e-27   1.9e-23       1     167 [.     444     642 ..     444     643 .. 0.83

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 2.1e-27
                   EEEEE--S-.S.......SS-----.-HHHHHHHHHHHHHHHHHTTT--EEEES-SBSTT-.....SEEEE...TTE.EEE-HHHHHHHHHHHS--S CS
                   xxxxxxxxx.x.......xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx RF
  Alpha-L-AF_C   1 gEyavwyds.p.......glleqqn.tledAlaeAafltglernaDvVkmasyAplvnviaatqWspdliw...dngkvvgtpsYyvqklfsknagg 85 
                   gEya+ + + +        + + ++  +   +ae ++l g erna  +  asyAp++++++ ++W+pdli+   d++++++++s+++++lfs+ + +
    KKY23468.1 444 GEYASVQPNlQgetgtdwSTGRMPYpFWVGTVAESIYLLGAERNAAAILGASYAPTLQNLDSYEWTPDLISfdaDTDDTTLSTSWHMISLFSNTRIA 540
                   89999755562556777755555666999*******************************************99999******************** PP

                   EEEEEEEE--EE...EEEEEET......................SS--EEEEEEETT-.-SEEEEEEEEE-.STT----SSSTTSSEEEEEEE.EE- CS
                   xxxxxxxxxxxx...xxxxxxx......................xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Alpha-L-AF_C  86 tvlpvelespky...eikgege......................aeeavevevdleglekaskaevtvlsg.dlkaeNtfenpekvvpkeeklakvs 156
                   +vlp++ +s +    +                            ++ +v+ +v++ + ++ ++a+ tvl++ d+ +eNt+ +  +vv+++++ +++s
    KKY23468.1 541 EVLPTSSTSYNTsygP-----AywvagtsasssgsyvfktsvynSTGDVNYSVSFPSTSSGATANLTVLTApDPYSENTVGT--NVVITTSNTVTAS 630
                   ******9944333340.....2555566667778899999999977799********9999999*****888*******999..4555555555788 PP

                   E...EEEEE-TT CS
                   x.xxxxxxxxxx RF
  Alpha-L-AF_C 157 g.gkftytlpay 167
                   g g+f +++p y
    KKY23468.1 631 GnGSFAFSVPNY 642
                   6377*****986 PP

>> DUF3879  Domain of unknown function, E. rectale Gene description (DUF3879)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.7e-05      0.15     116     158 ..     352     394 ..     345     401 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.7e-05
     DUF3879 116 dvyqklykkvekndrlaagytleqyerqyrqafleaakaadpk 158
                  +y+  y +v  +d + ++ +le y++  ++af++a++aa p 
  KKY23468.1 352 PIYNIKYVEVGNEDDIVSTESLETYQQYRWDAFYDAIHAAYPD 394
                 689999********************999***********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 4098.32
//
Query:       KKY23469.1  [L=2088]
Description: putative sh3 and ded_cyto domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.4e-106  355.4   0.0   4.9e-106  354.8   0.0    1.2  1  DOCK_N    DOCK N-terminus
    3.6e-41  141.4   0.8    1.2e-40  139.7   0.8    1.7  1  DHR-2     Dock homology region 2
    2.7e-35  122.0   0.0      5e-35  121.1   0.0    1.5  1  DOCK-C2   C2 domain in Dock180 and Zizimin proteins
    0.00019   20.9   0.0    0.00042   19.9   0.0    1.5  1  SH3_1     SH3 domain
    0.00022   21.0   0.0     0.0025   17.6   0.0    2.3  2  SH3_9     Variant SH3 domain


Domain annotation for each model (and alignments):
>> DOCK_N  DOCK N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.8   0.0  1.4e-109  4.9e-106       1     377 []     181     604 ..     181     604 .. 0.90

  Alignments for each domain:
  == domain 1  score: 354.8 bits;  conditional E-value: 1.4e-109
      DOCK_N   1 pslkigdetvvsaeeplvdEiascLREWhsl.lkelllkrkyelfdklsklieeLdlaRrqlLsgvltadelkelrektvwrLvrgNkllglDviVRdp 98 
                 p+lk+gdet++sa+eplvdEiascLREWhs+ l+elll+r+y +++k+s+++++LdlaRrqlL++vlta+e +++r +++w+Lv+gNk+lg++viVRd+
  KKY23469.1 181 PMLKVGDETPTSASEPLVDEIASCLREWHSTnLHELLLARQYGTLEKMSSIVNQLDLARRQLLHDVLTAQERSAVRDRAIWNLVKGNKMLGGEVIVRDQ 279
                 8************************************************************************************************** PP

      DOCK_N  99 egrgrvdtdedSvvelyklqsemalldespkikeeksrsekseseaaslhhllldlksfvgaslgeeaelffsLydkke...skflsEnflvrlnksgl 194
                 ++rgr+ t++dS+ve++klqs m++l ++p +++          e+aslhhll ++k+++g s   +++l  sLy  +e    ++lsE f ++l+++++
  KKY23469.1 280 TRRGRLVTGDDSAVEMTKLQSIMSVLGSNPLSQS----------EPASLHHLLCEVKAVTGLSAS-STTLSASLYLGSEsgtLSPLSEAFHIELPANES 367
                 ********************************99..........*****************8888.*************88889*************** PP

      DOCK_N 195 pkelaksleklrtLFtDLsskDlgd....areklyLVvkivrngrv........................................smelkskkkrsas 249
                 +++la+s +kl+t+FtDL+++D+g+    a++k+yLVv + + ++                                         s+++++k k++ +
  KKY23469.1 368 FANLARS-SKLKTIFTDLGASDIGEksapATRKVYLVVNVQAFQTPrprpsspgssaspsregtpttrsstalnpsgrgsvkagrrSLMFGPKGKTAIN 465
                 ******6.5*******************************99988677777777777777777777777777777777777777776666666655555 PP

      DOCK_N 250 srsesaskkseekeessets................esssakkektvrRpfGvavldlsdlkglkqsdeekehvlkiyvp........enesdfdqlhe 324
                  +++s s+                            ++ ++ +e+tv R++Gv+vl++++l  l+q +++++++l+++++        e+ s  ++ + 
  KKY23469.1 466 GDRPSVSQ-----------GgrstpierapssdrlrTAVANGQEQTVSRTVGVGVLEVGHL--LRQ-EKDVDFTLNVWSAagpndedsEELSPAETCIP 550
                 55544333...........033333444445567778899999999***************..999.****************9987655567788999 PP

      DOCK_N 325 diiksrtkkyekspraeglqVsLklf.hgdleqlrkenptllrgvaltrKlGFp 377
                 ++++s t++y +spra++++++L +   +d+e+l+k+npt +  ++ trK+GF+
  KKY23469.1 551 QLLRSLTGRYVRSPRASRIHLHLSPHaAPDAETLIKKNPTSMYAITRTRKIGFS 604
                 *****************************************************8 PP

>> DHR-2  Dock homology region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.7   0.8   3.2e-44   1.2e-40      11     447 ..    1349    1749 ..    1333    1758 .. 0.80

  Alignments for each domain:
  == domain 1  score: 139.7 bits;  conditional E-value: 3.2e-44
       DHR-2   11 nfarvklqviialsklvseedelneerlke.slktinsyaksdkelkessfpeqvkellkrlrtvlkatvkmkeekedpemladlqyslansyk..s 104 
                  +++ +++++i +l+ +  ++ ++ne++ ++ ++ ++ s+ ++ + + +  + + +kel+  + ++++ +v+ +   +  e+++++  +l++++k  +
  KKY23469.1 1349 DLSLIETEMIASLDLIFKTK-KINESVTQKlFIGELLSLFETIETMPDDALWIAIKELVATIDELMDLLVNAHGGPMT-ESVHTM--RLMEFMKdmQ 1441
                  56667788889999888887.666666655245677777777778999999999999999999888888885433333.444443..4667777655 PP

       DHR-2  105 spdlritwLeslaekhaenenfsEaaqclihaaaLiaeylkllkkipkklgasaFekispnvlkeesesasalkedsgvcdseefteeglvelleka 201 
                  ++d+ ++++++lae+ ++ +n +Ea ++l ++a+L+      +            + i + +  ++++ a+++ke                +l+ ++
  KKY23469.1 1442 KEDIFVRYVHELAEREEQARNPTEAGIALRAHAELYDWDSDKT-----------VAAIEKPF--YPEQPAFDRKE----------------SLYFQM 1509
                  7***********************************9332222...........34455555..56678999999................8***** PP

       DHR-2  202 iellkkgelyElaielyklliplyekk.rdykklseihkklaelyekivetsksekRlfgtYyRVgFyGkkF.eeldgkeyvYkepkltrLseiser 296 
                  i+l+++g+ +  a   y++l+ +ye+   dy kl+++ k + ++ e+i++    ++R   +Y+RV ++G +F ++l++key++ +   +r++ +++r
  KKY23469.1 1510 IQLFEDGKSWNNALASYRELADQYEHVaFDYAKLARTQKAMGKIHESIAK----DDRHTLKYFRVTYLGLGFpSSLREKEYIFEGLPSERMATFTDR 1602
                  **************************989*********************....9****************************************** PP

       DHR-2  297 lksqysekfgeekveiikdskpvdksel.dpdkaYiqitaVePyfeeeel.kerktsFernnnvnrFvfe.tP..Ftks.gkkaqgs.leeqwkrrt 386 
                  l++ y+ +           s+    ++l d + +Y+ +  V P  e e    +r       + v+ F+    P  Ft++   ++ gs ++e w ++ 
  KKY23469.1 1603 LQKLYPAAQIV--------SN----KDLeDLEGQYLLVSNVSPHRELEHPvLQRGRVP---QAVRDFLLTsNPiqFTMTlQRQTAGSdVKEHWVEKS 1684
                  ******99883........34....3455777***********877655533555444...478888875156889988776788888********* PP

       DHR-2  387 iLttensfPylkkRlevvskeeielsPievaieeiekkteeleaaikae....ppnlktLqmlLq 447 
                  i+tt+++fP+++kR+e+vs   + lsP++ aie + +kt  l  + k+       nl+ L   L+
  KKY23469.1 1685 IFTTAEAFPTILKRSEIVSVDMVRLSPLQTAIERVWRKTGDLGLLEKRGisseDQNLSALTETLN 1749
                  ***************************************99865444322233666666666665 PP

>> DOCK-C2  C2 domain in Dock180 and Zizimin proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.1   0.0   1.4e-38     5e-35       1     194 [.     607     800 ..     607     801 .. 0.87

  Alignments for each domain:
  == domain 1  score: 121.1 bits;  conditional E-value: 1.4e-38
     DOCK-C2   1 pgdvrNdlYvtlksgefss.............kgskssakniqvtvevrdsdgerlekaiylgsgeelvsefrsvvlyhnkqptfneeiKialpielte 86 
                 p++ r+d+Y+tl ++ +++               ++++  n+q+t+evr+s+g+r+e++i+++s++  ++ +r+ v+ + +   +n++i +++p+e+++
  KKY23469.1 607 PTQERSDIYLTLSEALIPRgallshpdygqvpLARSTNLFNLQLTMEVRSSSGKRIENCIVPASNSVGHTAWRTNVAAQGSR--WNQTICLKIPPEEVP 703
                 7888*************9888888888888875556777****************************************888..*************** PP

     DOCK-C2  87 khHLlFtfrhvsceekkkekdkeeeekpfgyaflpLlkedgraflkdgehelpvy...k..kelpp.....sgYlslpssrtssseeqkgpsekwldns 175
                 ++HL++++++ +             e pf+++++pL++  ++af++dg h+l+++   k  +   +     ++Ylslp++++++ +    ++ ++++++
  KKY23469.1 704 GSHLIMSLANAP-------------EFPFALCWMPLWH--DNAFVRDGRHTLVMHaydKstS---SmvngrGAYLSLPWNSSRQTRI---NKDESVTGP 781
                 **********99.............49**********8..67899**********5543541...2444569******995444444...4566699** PP

     DOCK-C2 176 kdtfkvrtklcSTiltqde 194
                  +++ v+t+lcST+++qd+
  KKY23469.1 782 AASLIVETYLCSTKYSQDP 800
                 ******************8 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.2e-07   0.00042       1      35 [.      13      49 ..      13      52 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.2e-07
                EESSSBEXSSTTBXEBSTTEEEEEEEECSS..SEEEE CS
       SH3_1  1 iAlYDYeaeesdELsfkkGDviivleksed..gWwkg 35
                +A+++++++++ +L+++ GD++ ++e+  +   W++g
  KKY23469.1 13 VAIFPFQPTHPADLPLELGDELYIIEQGGKdgAWYRG 49
                7*************************98888899998 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     7e-07    0.0025       1      35 [.      14      50 ..      14      62 .. 0.90
   2 ?    0.4   0.0      0.17   6.2e+02      40      49 .]      75      84 ..      69      84 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 7e-07
       SH3_9  1 AlypyepreddeLsLqrGDvitviee..sedgWlegs 35
                A++p++p++++ L+L+ GD +++ie+   ++ W++g 
  KKY23469.1 14 AIFPFQPTHPADLPLELGDELYIIEQggKDGAWYRGY 50
                89**********************88778999*9996 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.17
       SH3_9 40 tGlvPanyve 49
                +G +P+n+ve
  KKY23469.1 75 SGIFPKNCVE 84
                599******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2088 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.10u 0.32s 00:00:01.42 Elapsed: 00:00:00.50
# Mc/sec: 12606.95
//
Query:       KKY23470.1  [L=477]
Description: putative cytochrome p450 monooxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-44  150.4   0.0    1.1e-43  149.7   0.0    1.2  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   0.0   5.9e-48   1.1e-43      25     445 ..       7     457 ..       2     471 .. 0.80

  Alignments for each domain:
  == domain 1  score: 149.7 bits;  conditional E-value: 5.9e-48
                 HHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH.HHHHHHHHHHHHHHTSHSTTTHHHHHHHHH CS
        p450  25 vlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang.ekwkklRrfltptltsfgklsleelveeea 122
                 +++ ++++ gpi+rl  g+++  + +  e ++ v+  +  + + +++++++ +  k ++   v ++ + ++++   +++ +t++++ ++  e+    ++
  KKY23470.1   7 AIHAAHERCGPIVRL--GPTELSINCVDEGIRTVYSGS--FEKHDWYPRQFPNYGKEQMFSYVHNKPHgARKRMVSNIYSKTVLQSSAQVAENSKVLIS 101
                 567788999999875..677777777779999999998..56777788888874444444444444445777777777778888774557888888899 PP

                 HHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHT...TTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHH.HHHHHHHH CS
        p450 123 edlveklrkkagesselditellskaaldvigsilFgarfdl...ledeklselvkaveelssllskssvqllllfpllkylptkllrkl.keavkklk 217
                 ++l  +l+  a +++ +d+  + + +++d+++  lFg + ++   l+++++++++++ ++     ++ + ++ +l ++l+ l  +++ k+ +ea ++++
  KKY23470.1 102 NRLFPYLENAARTQTPVDVWSVNTGFTMDFMTVYLFGLSAGTkwaLNERERNQMMQKWANRK-PYEFYRSEIPKLSNWLQLLGIPIFPKFlDEANQAFE 199
                 99999*****99999***********************999733344444444444444443.444677889999999999999988664378888888 PP

                 HHHHHHHHHHHHCHCHC...................SCSSCSHHHHHHHHCTTCTCT.......SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 218 dlldklieerretldsa...................kksrrdfldalllakkekkge.......sklsdeelaatvlellfaGvdTtsstlswaLyeLa 290
                 dl  +l    ++ l +                    +           + k +++ e       ++ ++ e+a ++l+ l+aG++T++  l++   eL 
  KKY23470.1 200 DLNLRLCDAAEAHLGPLanvgddpvvykqlktqmikS---------NEQRK-TQDPEvgmqlltASEQRLEIASEMLDHLGAGHETSAICLTYLQWELC 288
                 8888888888888888888899888874444444442.........33333.2222233423333335789**************************** PP

                 HSHHHHHHHHHHHHHHCCTTT..........T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS.CEEETT.EEE-TT-EEEEEHHHHHT-TTTS CS
        p450 291 knPevqeklreEidevlgdkr..........eptyddlqklpyldavikEtLRlhpvvplllpRevtk.dvvirg.ylipkGtevivnlyalhrdpevf 377
                 +nP+ q++lreE+++  +              p+ + + +l++l av+ EtLRlh ++p + pR ++   +++ g  +ip +++v+  +y+lhr+p+vf
  KKY23470.1 289 RNPNWQKRLREELQTLSPAIAwppkteeefdLPSPRSVDELKVLHAVLMETLRLHAPIPGNEPRITPMkRCTLAGyPNIPPNIRVQAQPYSLHRNPDVF 387
                 ***************99988889999999999999*****************************98654******558********************* PP

                 SSTTS--GGGGB-TTS..CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGE CS
        p450 378 pnPeeFdpeRFldekg..nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdppp 445
                 p+Pe+  peR+l  +   + k  +  f +FG G R+CiG +lA+ e+kl+ a +  n++ ++++++ ++ 
  KKY23470.1 388 PEPESWLPERWLLPSSseQLKEMHRWFWAFGSGGRMCIGSNLAMQEMKLVTAAMYTNYTTSIIDDEGIEE 457
                 ************99887756688999*********************************99998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 2871.35
//
Query:       KKY23471.1  [L=1491]
Description: putative exocyst complex component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.2e-204  680.8   1.6     3e-204  680.4   1.6    1.1  1  Sec3_C          Exocyst complex component Sec3
    3.3e-26   91.2   0.0    7.1e-26   90.2   0.0    1.6  1  Sec3-PIP2_bind  Exocyst complex component SEC3 N-terminal PIP
     0.0035   17.7   0.0     0.0079   16.5   0.0    1.6  1  Sec3_C_2        Sec3 exocyst complex subunit


Domain annotation for each model (and alignments):
>> Sec3_C  Exocyst complex component Sec3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  680.4   1.6    5e-208    3e-204       2     700 .]     732    1471 ..     731    1471 .. 0.97

  Alignments for each domain:
  == domain 1  score: 680.4 bits;  conditional E-value: 5e-208
      Sec3_C    2 dadeleerLsreLskleaan.ikrllesdkkveelkkdidkalkecdeldalltlysveLstlsedieyIEsqnngLQvksaNqklLykeLeellst 97  
                  ++d l ++++re+ +++a++ + ++ ++++k+++l++  dka++ec+eld lltly++eLstl +d++yIE+q++gLQv++aNqklL+ e+++ll t
  KKY23471.1  732 TVDDLQADIRREIGRAQATGwLGHIEQQETKTQQLATLFDKAIAECEELDGLLTLYQHELSTLADDVAYIEAQGQGLQVQTANQKLLQTEVRNLLRT 828 
                  5899********************************************************************************************* PP

      Sec3_C   98 vslsesdleaLkeaelssanglealeealeaLfkAltaIdsdlk..................dlesdlgemravkerrerYekvsssFlrrlvefle 176 
                  +s+s++dl++L+ea+l +++gl+a+e+al+ L+kA+ +Id+d                      + +lg+mrav+++++ Y+ +++ Fl+rl +++ 
  KKY23471.1  829 ISISPEDLRDLREASLGTPDGLDAAEQALAVLYKAMLTIDPDIRqnrkrqadaghehtgvgvYADAELGQMRAVTQKKDDYRDETQLFLKRLNQYMT 925 
                  *******************************************99**************************************************** PP

      Sec3_C  177 kkfksaekelgkdld......satkkklslekhlevlnlLliYsgLilflKevdaekfeallqqYnasiskvYereikeffeslkkslkkssgsees 267 
                  ++fk ae++++  l+          ++l+++ +   +n+L++Y+ L+lf++ev + +++ l++ Y++s + vY++++++++ ++kk ++k +g+e +
  KKY23471.1  926 MAFKIAEQRTSDYLEqnksglGGIATRLDTRVYDVSRNELWMYNALMLFVREVNSYEWQTLISMYESSTKSVYQDQFRDNVFAWKKMTRKPTGDE-Q 1021
                  *********999999776666556789********************************************************************.9 PP

      Sec3_C  268 eslssssseekkteglalrksrkltlkssktganls.ekaaqkktsgrlkpdeafaevLdeleplilveQnFiidfFhlssletldfnefvkqsaps 363 
                  + l++ +++ek+ e+la +++rklt+k++kt++  +  ++  ++++gr++p eaf++v+de  + i  eQnF ++fFhl+sl+t+df++ v++++p+
  KKY23471.1 1022 DILFTGQEKEKEGESLA-TAARKLTVKRGKTVRVGNlRQSTGERQDGRVEPFEAFSGVMDEQLKCIAEEQNFSVEFFHLNSLSTADFADIVAAAPPD 1117
                  99999999999999888.**************7776666666999***************************************************9 PP

      Sec3_C  364 errakdlsrsknvesdrelarkveklmeaifqflekelvnlvekvlkvdplqalgilvyleqkikeleesnqsflssvlqkllekvkslfkkfvdeq 460 
                  +r+ ++ls ++n ++dr++a++vek+m+ +++f+ ++++nl+++vl++d+lq++g+l ++e+k  + ee+nq+++ ++lq++++++ +lf +fvdeq
  KKY23471.1 1118 KRKLPNLSAKHNYDPDRDMAKMVEKVMDNLYSFWPQDMQNLIDWVLRNDQLQGVGLLYVIEKKLSDYEETNQEYITRTLQRIHDRLVGLFHRFVDEQ 1214
                  9999********************************************************************************************* PP

      Sec3_C  461 vesieetkvkvkkrkgvlpfvrnfpefvkavEsmlssaera......lavrtlvdqaYeklieavfelLkreakeekaks.........vadeeedk 542 
                  ++ ie+tkvk+kkr gv++f+r fp f+ avE m+ssa +       l++r +v++aY k+++a+fe+L  +ake++a +         ++ ++edk
  KKY23471.1 1215 IRGIEDTKVKIKKRRGVISFMRVFPSFSGAVEGMISSATSDkghhesLEIRFIVNEAYGKINKAMFESLIFIAKENPAVAaaqgangvtSTGDPEDK 1311
                  **************************************99999************************************9********96666**** PP

      Sec3_C  543 eklnrhvllleNmnhfleeLselknsevleelrdeakqlfdeelelYvdavlrrplgkLieFvegveellqt....kkaaeissqaaySkqalkkil 635 
                  e+ln+h+l++eNmnh++ee++  +n  vl+e+ ++a+ +f +++  Y+dav+rrplgkL++F+e++e+l+++     +   i++++++S++++kk++
  KKY23471.1 1312 EALNYHILMIENMNHYIEEVDTKNN-IVLDEWHEKATHEFYDHMRQYIDAVIRRPLGKLLDFIESTESLMKSypseASYPSIAAKPSHSRSTAKKVI 1407
                  *************************.**********************************************9844444568899************ PP

      Sec3_C  636 skYtakeirkgieklykrvekhfledadravleeeLlqkvwseleeefiskylrlekiiqkvYdg 700 
                  ++Y+ keirkgi++l+kr+ekhf +dad+++  ++ + kv  e+++++++  +r+++i++kvY+g
  KKY23471.1 1408 AAYDLKEIRKGIDTLKKRIEKHF-GDADDPGVGRSIVTKVFGECSARYVDAHDRMRRILEKVYEG 1471
                  ***********************.***************************************86 PP

>> Sec3-PIP2_bind  Exocyst complex component SEC3 N-terminal PIP2 binding PH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.0   1.2e-29   7.1e-26       1      90 []      66     163 ..      66     163 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 1.2e-29
  Sec3-PIP2_bind   1 kkkprfLclsvtksgrkevrlhkvKensngssfsigktWkLkeLklvegrdpdk...........ddpeFdltfdkpykweaesskeknaFirsL 84 
                     +kkpr ++++v+ksg+  vr+hk++en+ng+ fsigktW++++L  v++++  +           +d  F++t++kpy+w+a+  k+k++Fi+sL
      KKY23471.1  66 NKKPRTIIVAVRKSGK--VRVHKARENNNGT-FSIGKTWEINDLGPVKSFSVVTpsddprlkewaGDTGFVVTLGKPYYWQANAYKAKQFFIESL 157
                     69************88..************9.*****************99998999********8899************************** PP

  Sec3-PIP2_bind  85 vklykk 90 
                     vk+y+k
      KKY23471.1 158 VKIYRK 163
                     ****97 PP

>> Sec3_C_2  Sec3 exocyst complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.3e-06    0.0079      11      85 ..     729     804 ..     716     805 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.3e-06
    Sec3_C_2  11 eedaikdvlkelefsldeaiies.veelaeekielkevkdilqdsilGCeslfstlnlyslelstvlndvinieqq 85 
                 e+++++d + ++   +  a     + ++ +++ + +++   ++ +i+ Ce l   l ly  elst  +dv  ie q
  KKY23471.1 729 EGKTVDDLQADIRREIGRAQATGwLGHIEQQETKTQQLATLFDKAIAECEELDGLLTLYQHELSTLADDVAYIEAQ 804
                 566777777777777766655432567788999****************************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.01u 0.32s 00:00:01.33 Elapsed: 00:00:00.51
# Mc/sec: 8756.56
//
Query:       KKY23472.1  [L=181]
Description: hypothetical protein UCRPC4_g02920 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-19   68.9   3.4    3.8e-19   68.9   3.4    2.1  3  DUF1674      Protein of unknown function (DUF1674)
  ------ inclusion threshold ------
      0.026   14.6   0.6      0.045   13.8   0.6    1.4  1  DUF1542      Domain of Unknown Function (DUF1542)
        0.1   12.1   4.6       0.14   11.7   4.6    1.1  1  MscS_porin   Mechanosensitive ion channel porin domain
       0.12   11.5   0.2       0.13   11.4   0.2    1.2  1  Phage_cap_E  Phage major capsid protein E


Domain annotation for each model (and alignments):
>> DUF1674  Protein of unknown function (DUF1674)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       1.5   6.6e+03       9      18 ..      47      56 ..      35      71 .. 0.57
   2 ?   -2.0   0.1       1.2   5.4e+03      14      14 ..      93      93 ..      74     112 .. 0.59
   3 !   68.9   3.4   8.5e-23   3.8e-19       4      50 .]     133     181 .]     130     181 .] 0.97

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.5
     DUF1674  9 aaepapefeg 18
                 +e+++ fe+
  KKY23472.1 47 PEEDQKIFEE 56
                3344444444 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.2
     DUF1674 14 p 14
                +
  KKY23472.1 93 A 93
                2 PP

  == domain 3  score: 68.9 bits;  conditional E-value: 8.5e-23
     DUF1674   4 erpaaaaepapefegdvnpktgEigGpkgpEPtR...ygDWeykGrvsDF 50 
                 ++p+ ++ ++pefegd npktgEigGp ++EP+R    g+W+y+Gr++DF
  KKY23472.1 133 LHPDLRRGAQPEFEGDRNPKTGEIGGP-KNEPLRwgaAGEWTYNGRATDF 181
                 79*************************.********99************ PP

>> DUF1542  Domain of Unknown Function (DUF1542)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.6     1e-05     0.045      18      44 ..      79     105 ..      78     119 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1e-05
     DUF1542  18 aeInnnpnaTdeEKqaainkvnaalne 44 
                 +eIn++p+a++ E ++a n++ ++l +
  KKY23472.1  79 TEINQSPDASTSEAAEARNEIAQRLAK 105
                 69*********************9876 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   4.6   3.1e-05      0.14      50     124 ..      47     122 ..      44     133 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.1e-05
  MscS_porin  50 Pkelrelqqeleal.qkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlvelqtrperaqqqlte 124
                 P+e +++ +el++  + + +++  ++l++ s +e++q  ++  s+ +e+++++aq  ++l+ ++t++e   ++l++
  KKY23472.1  47 PEEDQKIFEELQRQsTGAFSTPRSQRLDAPSPTEINQSPDASTSEAAEARNEIAQRLAKLRGQNTQIEGSSATLSK 122
                 788889999999998899999***********************************************99998886 PP

>> Phage_cap_E  Phage major capsid protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2     3e-05      0.13      53     113 ..      49     109 ..      15     133 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3e-05
  Phage_cap_E  53 gapgevveregrstrsfeppyikekdvitadelqnlrafgespaervqeevarkladlrdk 113
                    +  + e ++ st  f +p+ ++ d+  + e+++  ++ +s+a+ + +e+a++la+lr +
   KKY23472.1  49 EDQKIFEELQRQSTGAFSTPRSQRLDAPSPTEINQSPDASTSEAAEARNEIAQRLAKLRGQ 109
                  555556667788999********************9****999***************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1233.19
//
Query:       KKY23473.1  [L=216]
Description: putative snf7 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-47  161.1  10.9    2.1e-47  160.9  10.9    1.0  1  Snf7            Snf7
  ------ inclusion threshold ------
      0.016   12.8   8.1      0.023   12.3   8.1    1.2  1  DUF3584         Protein of unknown function (DUF3584)
      0.017   15.1   4.3      0.017   15.1   4.3    1.9  2  Alpha-2-MRAP_C  Alpha-2-macroglobulin RAP, C-terminal domain
      0.026   15.0   6.5        5.7    7.5   0.0    2.8  2  NPV_P10         Nucleopolyhedrovirus P10 protein
      0.032   14.6   9.4        2.3    8.7   0.0    3.5  3  FlaC_arch       Flagella accessory protein C (FlaC)
      0.034   14.5   7.9       0.37   11.2   0.0    3.4  3  CLZ             C-terminal leucine zipper domain of cyclic nu
      0.035   14.1  11.8        2.3    8.3   9.4    2.7  2  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
      0.042   13.9   0.0       0.09   12.9   0.0    1.5  1  HHH_2           Helix-hairpin-helix motif
      0.095   13.0  11.1       0.72   10.1   9.8    2.2  2  DUF5082         Domain of unknown function (DUF5082)
       0.12   11.0  10.1       0.84    8.2   9.6    1.9  2  FapA            Flagellar Assembly Protein A
       0.15   11.7  11.8       0.23   11.2   8.7    2.2  2  DUF4201         Domain of unknown function (DUF4201)
       0.24   11.8   4.6        1.8    9.1   0.0    2.5  2  DUF4094         Domain of unknown function (DUF4094)
       0.47   10.5   6.8       0.17   11.9   2.5    2.4  3  DUF2205         Short coiled-coil protein
        0.7   10.5  10.1        6.4    7.5   4.4    3.6  2  SlyX            SlyX
        1.1    8.9   5.9         28    4.3   5.8    2.1  1  Endotoxin_N     delta endotoxin, N-terminal domain
        1.2    8.2   8.9        2.3    7.2   8.9    1.4  1  Atg14           Vacuolar sorting 38 and autophagy-related sub
          3    8.2  10.8        7.4    6.9   7.7    2.2  2  Muted           Organelle biogenesis, Muted-like protein
          6    7.8  12.0         24    5.9  10.8    2.1  2  PRKG1_interact  cGMP-dependent protein kinase interacting dom


Domain annotation for each model (and alignments):
>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.9  10.9   2.1e-50   2.1e-47       2     160 ..      12     190 ..      11     203 .. 0.92

  Alignments for each domain:
  == domain 1  score: 160.9 bits;  conditional E-value: 2.1e-50
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-...........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Snf7   2 airsLrkaerkldkkqeslekkikkleaelkklakkgn...........kdralllLKqkkryekqldqldnqlanleqvslaienlksnkevlnamkq 89 
                 +++ L  a+ ++d++++sl+ k++ l+ael  +++k+            k++al++L ++k+ye+q+dql++q++n+eq+++  +nlk+ +++++amk+
  KKY23473.1  12 PKPTLDSAIGNVDSRISSLDVKLSSLNAELTTYQQKIAkmrdgpgktalKQKALKVLQRRKMYESQRDQLQQQSWNMEQANMMQDNLKNVMTTVDAMKT 110
                 678899******************************888999********************************************************* PP

                 HHHHHHHHHHCTCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTT-GGTTHHHHHHHHHHHHHHHHHCSH..........H CS
        Snf7  90 gakamkamnkkvdidkidklmdeiedqmekaeeisEalsrslddadeedEeeleaeLdaLeqelgdeell.........d 160
                 ++ka+k+++ k+didki++++de++d m++ +ei+E +sr+++ +d++dE+el+aeL+aL +e + e++          +
  KKY23473.1 111 TNKALKQQYGKIDIDKIERMQDEMQDLMDVGNEINESISRAYEVPDDVDEAELDAELEALGEETAWEQENgigepgflqE 190
                 *******************************************99******************88877555555554433 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   8.1   2.3e-05     0.023     612     757 ..      17     173 ..       9     191 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.3e-05
     DUF3584 612 eealqsaeakqkqaeeelkqlnaeleeakravaea.....atalknardtlerlqnekesekdklekaiaerkq..qaeeqlqkldaqlkqleeqqkaa 703
                 ++a+ +  +++++++ +l++lnael+  ++++a+      +talk++ +++ + ++  es++d+l+++  +  q    + +l+++    ++++  +ka+
  KKY23473.1  17 DSAIGNVDSRISSLDVKLSSLNAELTTYQQKIAKMrdgpgKTALKQKALKVLQRRKMYESQRDQLQQQSWNMEQanMMQDNLKNVMTTVDAMKTTNKAL 115
                 555666666666677777777777766666666651222235555555555555555555555555554333220033444555555554444444444 PP

     DUF3584 704 lee...lkedlseerlekkakwqevvgeldeqlaelkkaiea.artqakarlkeleea 757
                 +++   ++ d+ e+  ++ + +++v  e++e++ ++ +  +   +++ +a+l++l e+
  KKY23473.1 116 KQQygkIDIDKIERMQDEMQDLMDVGNEINESISRAYEVPDDvDEAELDAELEALGEE 173
                 4431113344445555555555555555555555554443321344445555555444 PP

>> Alpha-2-MRAP_C  Alpha-2-macroglobulin RAP, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   4.3   1.7e-05     0.017     135     197 ..      33     108 ..      25     118 .. 0.83
   2 ?    2.9   0.7      0.09        90      71     102 ..      92     123 ..      82     157 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.7e-05
  Alpha-2-MRAP_C 135 eLeslkeELkhyesrleklrhlqaelelseeklk.............deekkkekkekhkkleekikklgrkvekl 197
                      L+sl  EL+ y++++ k+r    + +l+++ lk             + ++++ ++e+++++++++k++ ++v+ +
      KKY23473.1  33 KLSSLNAELTTYQQKIAKMRDGPGKTALKQKALKvlqrrkmyesqrdQLQQQSWNMEQANMMQDNLKNVMTTVDAM 108
                     699*****************99999999999999888888888877545566667888899999999999888765 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.09
  Alpha-2-MRAP_C  71 eeeeekkkeylekenelkekhrelkdgfdrLe 102
                     +  +++ k+ +++  ++k++++ lk+++ +++
      KKY23473.1  92 NMMQDNLKNVMTTVDAMKTTNKALKQQYGKID 123
                     22222334555555555555555555555543 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0057       5.7      11      39 ..      18      46 ..      15      55 .. 0.68
   2 ?    7.3   3.4    0.0063       6.3      10      72 ..      95     156 ..      79     160 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0057
     NPV_P10 11 adikavddkVdalqqqvddvqenlpdvte 39
                ++i +vd+++++l+ ++ +++++l + ++
  KKY23473.1 18 SAIGNVDSRISSLDVKLSSLNAELTTYQQ 46
                56777888888888888877777776543 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0063
     NPV_P10  10 radikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiLnpde.vPd 72 
                  ++ k+v + Vda+++  + ++++  +++   +k++++++++++l +  ++I++  +    vPd
  KKY23473.1  95 QDNLKNVMTTVDAMKTTNKALKQQYGKID--IDKIERMQDEMQDLMDVGNEINESISRAYeVPD 156
                 57789**********************99..89************9999999998886556776 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0024       2.3       2      34 ..      20      52 ..      18      54 .. 0.77
   2 ?    1.6   0.3      0.37   3.7e+02      21      41 ..      79     102 ..      65     104 .. 0.68
   3 ?    1.9   6.4      0.31     3e+02       5      29 ..     115     140 ..      78     154 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0024
   FlaC_arch  2 idelEnklsklsteletvkkeneelsksveelk 34
                i+++++++s+l+++l+++ +e+   ++++ ++ 
  KKY23473.1 20 IGNVDSRISSLDVKLSSLNAELTTYQQKIAKMR 52
                567788888888888888888888888887775 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.37
   FlaC_arch  21 keneels...ksveelkenVkdll 41 
                 +++++ s   ++ +++++n k+++
  KKY23473.1  79 DQLQQQSwnmEQANMMQDNLKNVM 102
                 555444422256679999999998 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.31
   FlaC_arch   5 lEnklsklst.eletvkkeneelsks 29 
                 l ++ +k+++ ++e +++e+++l + 
  KKY23473.1 115 LKQQYGKIDIdKIERMQDEMQDLMDV 140
                 23333344444444444444444444 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00037      0.37      26      62 ..      13      49 ..       6      52 .. 0.88
   2 ?    1.7   4.8      0.34   3.4e+02      23      56 ..      88     121 ..      60     135 .. 0.78
   3 ?    0.2   0.1         1     1e+03      32      43 ..     126     137 ..     123     153 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00037
         CLZ 26 qkeleekverLessLeaLqtrlarLlaeyessqrkLk 62
                + +l++ + +++s++ +L+ +l  L ae+++ q+k+ 
  KKY23473.1 13 KPTLDSAIGNVDSRISSLDVKLSSLNAELTTYQQKIA 49
                5678999999*************************96 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.34
         CLZ  23 gaeqkeleekverLessLeaLqtrlarLlaeyes 56 
                  ++++ ++++++++ ++++a++t  + L ++y +
  KKY23473.1  88 MEQANMMQDNLKNVMTTVDAMKTTNKALKQQYGK 121
                 3677888999999999999999999999998865 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1
         CLZ  32 kverLessLeaL 43 
                 k+er++ +++ L
  KKY23473.1 126 KIERMQDEMQDL 137
                 666666666665 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.016        16      82     122 ..      13      53 ..       7      62 .. 0.75
   2 ?    8.3   9.4    0.0023       2.3       3      77 ..      62     136 ..      60     164 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.016
  CENP-F_leu_zip  82 keeLekelqkkqervseLeslnsslenlleekEqekvqmke 122
                     k +L+  + +  +r+s+L+   ssl+  l    q+ ++m++
      KKY23473.1  13 KPTLDSAIGNVDSRISSLDVKLSSLNAELTTYQQKIAKMRD 53 
                     55677777777888888888888888888888888777765 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0023
  CENP-F_leu_zip   3 kkklhvlekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieela.eelreleldLva 77 
                     +k l+vl++ K  e++ d+L+++  n+e+  +m++ n+ +v++ ++  k + ++lk++  ++   + ++++ ++++
      KKY23473.1  62 QKALKVLQRRKMYESQRDQLQQQSWNMEQ-ANMMQDNLKNVMTTVDAMKTTNKALKQQYGKIDiDKIERMQDEMQD 136
                     7999************************6.68999**********************9888753344555554444 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     9e-05      0.09      14      58 ..     110     155 ..     109     159 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9e-05
       HHH_2  14 ktAklLakrFk..sldaLkkasleeLlevddiGeeiAqsivefFene 58 
                 +t k+L ++++  ++d++++++ +e++ + d+G+ei +si + +e +
  KKY23473.1 110 TTNKALKQQYGkiDIDKIERMQ-DEMQDLMDVGNEINESISRAYEVP 155
                 6889999***966677888775.89***************9999877 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   9.8   0.00072      0.72       3     106 ..      25     136 ..      23     145 .. 0.78
   2 ?    4.2   0.1     0.051        51       4      39 ..     126     161 ..     123     180 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00072
     DUF5082   3 tkisklqaqiaelrseiaaleekIerLk..eaktklsdekeslkqkkkklekp..lnssesWkGkeennydgirsnlessyqtyvdkldelid...aie 94 
                 ++is+l  + ++l +e+ ++++kI++ +    kt+l+++  ++ q +k  e +   ++++sW+ +++n  ++ + n+ + ++++++  ++l++   +i+
  KKY23473.1  25 SRISSLDVKLSSLNAELTTYQQKIAKMRdgPGKTALKQKALKVLQRRKMYESQrdQLQQQSWNMEQANMMQDNLKNVMTTVDAMKTTNKALKQqygKID 123
                 68999999********************77789999998888888877655441156677***************998888888887777766111455 PP

     DUF5082  95 .eEIerLenqise 106
                  ++Ier++ ++++
  KKY23473.1 124 iDKIERMQDEMQD 136
                 4567777766654 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.051
     DUF5082   4 kisklqaqiaelrseiaaleekIerLkeaktklsde 39 
                 ki+++q ++ +l    + ++e I+r +e+ + ++++
  KKY23473.1 126 KIERMQDEMQDLMDVGNEINESISRAYEVPDDVDEA 161
                 889999999999999999999999988877777765 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   9.6   0.00084      0.84     334     423 ..      22     111 ..       8     135 .. 0.68
   2 ?    2.6   6.6     0.041        41     335     411 ..      74     151 ..      65     160 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00084
        FapA 334 elkeklkeleeeleeleeeleklkkkikklpklkaekqlese..kkeqlkklletkeklkeeleeleeelkelkeeleskkeeakikvnkei 423
                 +++++++ l+ +l +l++el+++++ki+k+++   + +l+++  k  q  k+ e++    ++ +  +e+ + ++++l++   ++ + + k+ 
  KKY23473.1  22 NVDSRISSLDVKLSSLNAELTTYQQKIAKMRDGPGKTALKQKalKVLQRRKMYESQRDQLQQQSWNMEQANMMQDNLKNV--MTTVDAMKTT 111
                 68999**************************9666555544411555666777777777777777777777788888777..2233332222 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.041
        FapA 335 lkeklkeleeeleeleeeleklkkk...ikklpklkaekqlesekkeqlkklletk.eklkeeleeleeelkelkeelesk 411
                 + +++++l+++  ++e+  ++ ++    ++ ++++k     ++  k+q+ k+  +k e++++e+++l++  +e++e++ + 
  KKY23473.1  74 YESQRDQLQQQSWNMEQANMMQDNLknvMTTVDAMKT---TNKALKQQYGKIDIDKiERMQDEMQDLMDVGNEINESISRA 151
                 4445566666666663333333333222555555443...34566666666666555888999999999999999988876 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   8.7   0.00023      0.23      79     168 ..      27     119 ..      15     124 .. 0.82
   2 ?    4.9   2.2      0.02        20     106     157 ..      90     140 ..      87     154 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00023
     DUF4201  79 lthlkeklhmleselselkkelkekeer..laklrkelykvklerdklrkqneklkqqggllrvPaLlkD.YdktkekveekrksvkkLrrkv 168
                 ++ l  kl+ l++el + ++++ ++ +   +++l+++  kv ++r+ ++ q+++l+qq+++++    ++D  ++ +  v+ ++ + k L++++
  KKY23473.1  27 ISSLDVKLSSLNAELTTYQQKIAKMRDGpgKTALKQKALKVLQRRKMYESQRDQLQQQSWNMEQANMMQDnLKNVMTTVDAMKTTNKALKQQY 119
                 566677999999************999533889************************************844555666777777777777765 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.02
     DUF4201 106 rlaklrkelykvklerdklrkqneklkqqggllrvPaLlkDYdktkekveek 157
                 + + ++++l +v +  d +++ n+ lkqq g ++  ++ + + ++++++ + 
  KKY23473.1  90 QANMMQDNLKNVMTTVDAMKTTNKALKQQYGKIDIDKIER-MQDEMQDLMDV 140
                 5666788899999999999999999999999999999988.77777776655 PP

>> DUF4094  Domain of unknown function (DUF4094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0018       1.8      54      86 ..      12      45 ..       5      47 .. 0.80
   2 ?    1.4   3.7      0.42   4.2e+02      35      75 ..      73     115 ..      57     175 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0018
     DUF4094 54 skdilg.evskthkaiqtLdktissLemeLaaar 86
                +k  l+  +++  + i++Ld ++ssL  eL++ +
  KKY23473.1 12 PKPTLDsAIGNVDSRISSLDVKLSSLNAELTTYQ 45
                666777788899999***************9765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.42
     DUF4094  35 k...eelklvsedcdskdaesrskdilgevskthkaiqtLdkti 75 
                 +   ++ +l ++  + ++a+   +d l++v +t +a +t +k++
  KKY23473.1  73 MyesQRDQLQQQSWNMEQANM-MQDNLKNVMTTVDAMKTTNKAL 115
                 234566666666666433333.3477777777777777655554 PP

>> DUF2205  Short coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       6.7   6.7e+03      48      59 ..      33      44 ..      22      54 .. 0.53
   2 ?   11.9   2.5   0.00017      0.17      12      50 ..      72     116 ..      63     119 .. 0.85
   3 ?   -1.3   0.0       2.2   2.2e+03      24      37 ..     126     139 ..     121     150 .. 0.60

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 6.7
     DUF2205 48 KLesenrfLqqY 59
                KL s n  L  Y
  KKY23473.1 33 KLSSLNAELTTY 44
                333333333333 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00017
     DUF2205  12 klerearerLqq......qakeLqssLqaLaervdeVkeehdKLe 50 
                 k+ + +r++Lqq      qa+++q+ L++++  vd+ k  ++ L+
  KKY23473.1  72 KMYESQRDQLQQqswnmeQANMMQDNLKNVMTTVDAMKTTNKALK 116
                 555667788887777788*********************999887 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 2.2
     DUF2205  24 qakeLqssLqaLae 37 
                 +++ +q+ +q+L++
  KKY23473.1 126 KIERMQDEMQDLMD 139
                 44555555555554 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.4    0.0064       6.4       4      38 ..      19      53 ..      16     123 .. 0.87
   2 ?    3.2   0.6      0.14   1.3e+02      31      53 ..     125     147 ..     102     161 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0064
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX  4 rleeLEiklafqedtieeLndvvaeqqqqidrlqr 38
                 + +  ++++ ++  + +Ln++++  qq+i++++ 
  KKY23473.1 19 AIGNVDSRISSLDVKLSSLNAELTTYQQKIAKMRD 53
                566778999999********************987 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX  31 qqidrlqrqlrllaerlkelees 53 
                 ++i+r+q +++ l++  +e++es
  KKY23473.1 125 DKIERMQDEMQDLMDVGNEINES 147
                 46788999999888877776666 PP

>> Endotoxin_N  delta endotoxin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   5.8     0.028        28      59     109 ..      28      84 ..       8     139 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.028
  Endotoxin_N  59 nklkallkglslslkdfrkevknlkadPknaalks......avnvlylnlendietk 109
                  ++l   l+ l+++l+++++++  ++  P + alk+      + + +y + +++++++
   KKY23473.1  28 SSLDVKLSSLNAELTTYQQKIAKMRDGPGKTALKQkalkvlQRRKMYESQRDQLQQQ 84 
                  678888999999999999999999999999999998777776677777777766544 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   8.9    0.0023       2.3      23     138 ..      26     132 ..      15     155 .. 0.43

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0023
       Atg14  23 rlyelrerlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdlesl 121
                 r+ +l ++l +l++e  + ++ki k+  g+      ++++k+k+ k+ + ++  +++r++lq+ +  ++q +   ++     +    ++  ++ + ++l
  KKY23473.1  26 RISSLDVKLSSLNAELTTYQQKIAKMRDGPG-----KTALKQKALKVLQRRKMYESQRDQLQQQSWNMEQANMMQDNL----KNVMTTVDAMKTTNKAL 115
                 5555555555555555555555555555555.....333333333333333333333333333322222222222111....11111222222333344 PP

       Atg14 122 qneleerrkkqiaklqd 138
                 +++  +   ++i+++qd
  KKY23473.1 116 KQQYGKIDIDKIERMQD 132
                 44444444444444444 PP

>> Muted  Organelle biogenesis, Muted-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   1.5      0.17   1.7e+02      59     111 ..      26      79 ..       7      91 .. 0.52
   2 ?    6.9   7.7    0.0074       7.4      56     123 ..      87     154 ..      64     173 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.17
       Muted  59 clesmkenLselnkkleaalekverllqkeleeekrkseqlq..ekeeerkaewe 111
                  + s++ +Ls+ln++l + ++k+ ++++   ++   k++ l+  ++++ ++++ +
  KKY23473.1  26 RISSLDVKLSSLNAELTTYQQKIAKMRDGPGKTA-LKQKALKvlQRRKMYESQRD 79 
                 4455666666666666666666666666533332.22222220022233333333 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0074
       Muted  56 lpkcles..mkenLselnkkleaalekverllqkeleeekrkseqlqekeeerkaeweeflkelqekkee 123
                 + +   +  m++nL+++ + ++a++ + + l+q+  + +  k e++q +++ + +  +e  + +++ +e 
  KKY23473.1  87 NMEQ--AnmMQDNLKNVMTTVDAMKTTNKALKQQYGKIDIDKIERMQDEMQDLMDVGNEINESISRAYEV 154
                 2233..2459************************999999999999999998888888887777766654 PP

>> PRKG1_interact  cGMP-dependent protein kinase interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  10.8     0.024        24      18      93 ..      32     115 ..      22     140 .. 0.68
   2 ?    3.0   0.6      0.19   1.9e+02      18      65 ..     103     151 ..      99     181 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.024
  PRKG1_interact  18 reLeelekelselkseleklkqq.....rqesvskrssllelekrerrslerkiseleeelkeleeLr...aenqrLkdEngAL 93 
                      +L++l+ el++ +++++k++        +++  k  +  ++ +++r +l+++  ++e+ +   ++L+   +  + +k  n+AL
      KKY23473.1  32 VKLSSLNAELTTYQQKIAKMRDGpgktaLKQKALKVLQRRKMYESQRDQLQQQSWNMEQANMMQDNLKnvmTTVDAMKTTNKAL 115
                     556666666666666666665443211112244455555667777888888888888888877777775556778888888887 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.19
  PRKG1_interact  18 reLeelekelselkseleklkqqrqesvskr.ssllelekrerrslerk 65 
                     ++++ ++   + lk++  k++  + e+++++ + l+++ ++ ++s+ r 
      KKY23473.1 103 TTVDAMKTTNKALKQQYGKIDIDKIERMQDEmQDLMDVGNEINESISRA 151
                     5566666666666666666666665555544133444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2192  (0.12226); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 1437.66
//
Query:       KKY23474.1  [L=1203]
Description: putative sit4-associated protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.3e-194  645.9   0.0   4.3e-194  645.9   0.0    3.6  3  SAPS      SIT4 phosphatase-associated protein


Domain annotation for each model (and alignments):
>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.4     0.012   2.1e+02      49     285 ..      40      76 ..      14     125 .. 0.55
   2 !  645.9   0.0  2.4e-198  4.3e-194       1     489 []     159     798 ..     159     798 .. 0.82
   3 ?  -19.3  23.2         1   1.8e+04     272     327 ..     959    1076 ..     844    1121 .. 0.51

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.012
        SAPS  49 esgtgiiewlksqdLisklldlLs......peesediqssasdfLkaiItisanatanlqssigpneLtreLvseeivekLikimlkgksgsalvngvg 141
                 +  t+ ie+l + ++++kll+ +       +ee+ed                                                               
  KKY23474.1  40 QHNTKLIEFLRDDNVLKKLLQYVTapgppeEEEPED--------------------------------------------------------------- 75 
                 345555555555555555555555444422222222............................................................... PP

        SAPS 142 iiielirknnsdydeenllytsleedppsmrdpiylghlLrlfsehlkdfqqlllepkeksklettlgekiepLGfeRfkiveLiaeLLhcsnmallne 240
                                                                                                                    
  KKY23474.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

        SAPS 241 kkgeeivkerDevrerlleeltseeealedvsdeaskeesaesed 285
                                                             +
  KKY23474.1  76 --------------------------------------------E 76 
                 ............................................2 PP

  == domain 2  score: 645.9 bits;  conditional E-value: 2.4e-198
        SAPS   1 nenLldrkteemleFiksqenivekflkhidtpaimdlLlkiIstektesgtgiiewlksqdLisklldlLspeesediqssasdfLkaiItisanata 99 
                 ne+Ll++kteemleF+k+ +++++++l+h+d+p++mdlLlkiIs+ek e+g+gi++wl+sq Li++ll+ Ls +++ ++q+sa+dfLkaiItisana++
  KKY23474.1 159 NETLLEKKTEEMLEFLKTLDGVIPAMLQHVDCPMVMDLLLKIISLEKSEGGQGIVDWLQSQGLIPTLLSYLSIDSPPSTQTSAGDFLKAIITISANASQ 257
                 89************************************************************************************************* PP

        SAPS 100 nlqssigpneLtreLvseeivekLikimlkgksgsalvngvgiiielirknnsdydeenllytsleedppsmrdpiylghlLrlfsehlkdfqqlllep 198
                 n qs+igpn++tr+Lvsee+v++L++ ml g  g++l++gvgi+ie+irknnsdyd+en  +   ++ pp+++dpiylg+lLr+f++h++df++l+l++
  KKY23474.1 258 NEQSCIGPNSMTRQLVSEECVQSLVSSMLMG--GNPLTVGVGIVIEVIRKNNSDYDPENGHN---PDAPPTSHDPIYLGNLLRIFAKHVPDFMELILSS 351
                 *******************************..**************************987...9********************************* PP

        SAPS 199 keks............klettlgekiepLGfeRfkiveLiaeLLhcsnmallnekkgeeivkerDevrerlleel........................ 261
                 k+ +            +l++++g++iepLGf+Rfk++eL+aeLLhcsnm+llne+++e+ +++rD +rerl++ +                        
  KKY23474.1 352 KHAViagdrvvtkdrgTLSSAWGSEIEPLGFDRFKTCELMAELLHCSNMGLLNERGSEDFIHQRDVERERLRAMGlfnprregedsavdmsedslqfns 450
                 ***9********************************************************************999999988776655555444444443 PP

        SAPS 262 ........tse............eealedvs...............................deaskeesaesedltdkdedvsleesksakd...... 303
                         + +            e+++e+v                                +                                    
  KKY23474.1 451 gasvirpsS-DapedarnasasdEDGFEEVArsdvpsdpekanppsaddtfaeiqektgltlE-----------------------------Sdlvdep 519
                 333333330.03333333333335555555555444444444444444444444444444440.............................1555555 PP

        SAPS 304 .................................................................................enkesdesesdtaeesse 321
                                                                                                  ++++  +s+s +++ + +
  KKY23474.1 520 lssprrtefsekvedvempsplkprdgpaitsdnlvegvrrvsledttmsspppeeqtqpslssspvehrddvpkalfgndQSEKTLTSQSPDTHRARD 618
                 666666666666666666666666666666666666666666666666666677777777777777777777777777765333333333333333333 PP

        SAPS 322 ededdasseesa....laeeteeklr............kkpvvGDlLKiklvelkilptiLdlFfkYpwNNfLHnvVydivqqilngkmdrgynrfLav 404
                 ++  +++ ++s       e++                 +kpvvGD+LK+++ve+k++pt+L++Ff++pwNNfLHnvVyd++qq++ng+mdrg+nr La+
  KKY23474.1 619 DHGIEDPGNTSSqsvvMGELE----DrqyppgveleanGKPVVGDYLKLMFVENKVVPTVLSFFFRFPWNNFLHNVVYDVIQQVFNGPMDRGFNRSLAI 713
                 333333333333111133333....1455699999999************************************************************* PP

        SAPS 405 dLfekaklterilegqkesdesqaekkirlGYmGHltlIAeevvkfleryppellseeieekleneeWeeyveetLeetrekena 489
                 dLfe++ +te+i++gq++sde+q++k++rlGYmGHltl+Aeevvkf+er+ppells+ ++e++ n++W++yve+tL++tre++na
  KKY23474.1 714 DLFETGSITEQIVDGQRRSDEAQQTKNMRLGYMGHLTLVAEEVVKFSERHPPELLSQSVMERVLNQQWIDYVEQTLSDTRERDNA 798
                 ***********************************************************************************96 PP

  == domain 3  score: -19.3 bits;  conditional E-value: 1
        SAPS  272 s...................deaskeesaesedltdkdedvsleesksakd.............................................. 303 
                  +                   d                             +                                              
  KKY23474.1  959 GgtqavqgtsknsespffdsD-----------------------------Nnddpfkalgdddveddgdensghveddeagsksgersskrglastg 1026
                  122222222222222222221.............................02222333333333333333333333334445666666666777777 PP

        SAPS  304 ..........................enkesdesesdtaeesseededda 327 
                                            +++++d   +++++es e+d++++
  KKY23474.1 1027 fvsvgrgisslfstsnktkrpqarrsKSNHDDFGRHSSEDESTESDSSSE 1076
                  77777777777766555444443332111111112222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       870  (0.0485247); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.48
# Mc/sec: 7574.25
//
Query:       KKY23475.1  [L=583]
Description: putative mfs multidrug transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-40  137.6  62.4    4.8e-40  137.6  62.4    2.4  2  MFS_1            Major Facilitator Superfamily
    2.6e-18   65.8  23.4    3.8e-18   65.2  23.4    1.1  1  TRI12            Fungal trichothecene efflux pump (TRI12)
    2.4e-15   56.3  26.8    2.5e-15   56.3   8.2    2.5  3  Sugar_tr         Sugar (and other) transporter
  ------ inclusion threshold ------
      0.028   12.7   9.1       0.45    8.7   0.8    2.9  2  OATP             Organic Anion Transporter Polypeptide (OATP)
       0.22   11.3   3.3       0.79    9.5   0.2    2.9  2  Phage_holin_2_3  Bacteriophage holin family HP1


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.6  62.4   1.3e-43   4.8e-40       1     352 [.      55     454 ..      55     455 .. 0.85
   2 ?   -3.2   0.2      0.83     3e+03      63      75 ..     522     534 ..     511     544 .. 0.44

  Alignments for each domain:
  == domain 1  score: 137.6 bits;  conditional E-value: 1.3e-43
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 ++l+a+++al+ + +++alp ++++ l  s+ e+ +  t++ l++av ++++++ls  fGrr++++++l++f++g+l+++++ ++++++++rv+qG+g+
  KKY23475.1  55 IMLLALMVALDGTSISVALP-IISRKLKGSAIEAFWTGTAFLLASAVIQPLIASLSHIFGRRPMMFVSLAFFLAGALVAALCKNFTVMIIGRVIQGIGG 152
                 578999**************.9*****************************************************88888789*99************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 g+l+++  +li+d++p + rg  +glls+++slG++ gp++gg++a+ + Wr++fyi+ ++  l++ +++++l  + +e++   + ++           
  KKY23475.1 153 GGLMALTEILITDLVPLRLRGDWMGLLSVMWSLGSVTGPVIGGAFAEKATWRWIFYINLPFIGLGAPMVWFFLKMNFKESALLDKLRRVdwvgiflfia 251
                 *****************************************************************9987777777777777777666669999****99 PP

       MFS_1 189 ................kgtgpaplvp............awkallkdpvl.....w......illialllfffgfsglltllplylqevlglsglllagl 248
                                 +++ ++ lvp            +w+  ++   l     +      ++ ++  l +++++ +l++lply   v g+s  +++g+
  KKY23475.1 252 sstsflvpvtwggvmyAWDSWHTLVPllvgiagiaafvVWEGYFATETLirlsiFrettakVAYFTTTLHGLILWCILYYLPLYYEAVQGYS-PIISGV 349
                 9999999999999999555555555555566666666656666666644332221343333233333333557777****************.89***9 PP

       MFS_1 249 llallalvgailallagrlsdrlgrrrrlllallllllaalglallavt.ssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntags 346
                 ++  + + +a+la ++g l++++g  r+ ++++ +++++  gl+ l    +s +++++  +++G+g g+ fp+l+ +++ +  ++ +++a++ f ++++
  KKY23475.1 350 AIFPGTFTVAPLAAVTGILITKTGQYRYFIIIGWVITTVGGGLLTLLDVhTSIPAWIFETLIVGIGIGILFPALTFAVQASNTEQDMAFAVSMFAFFRT 448
                 999999999999************97777777777776666666666662455555557888************************************* PP

       MFS_1 347 lggalg 352
                 +g a+g
  KKY23475.1 449 FGQAIG 454
                 ****98 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.83
       MFS_1  63 rvlllglllfalg 75 
                 +++l++l++ +l 
  KKY23475.1 522 WIMLTCLAGVCLL 534
                 3333333333333 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2  23.4   1.1e-21   3.8e-18      32     488 ..      38     485 ..       9     503 .. 0.81

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 1.1e-21
       TRI12  32 lpegyyrsprvvasfaafslnvvatyfvlqasasalpnilqdvgqsensslfs.tlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctat 129
                   +g++  pr   +faa+ l  +   +   + + alp i + +  s  +++++ t + +  av   ++  l+  fgrrp++ ++  + l ga+v + ++
  KKY23475.1  38 PDNGFHPGPRFYLAFAAIMLLALMVALDGTSISVALPIISRKLKGSAIEAFWTgTAFLLASAVIQPLIASLSHIFGRRPMMFVSLAFFLAGALVAALCK 136
                 3469999**********988776666666667789*******99998888764389999*****9********************************** PP

       TRI12 130 kfntllaamtllgvaagpaga.splfvgelmsn..ktkflgllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaql 225
                 +f  ++    + g+  g   a + +++ +l+    +  ++gll v      ++  +p +g  +a + +wrwifyi +    i +   +vw+    f ++
  KKY23475.1 137 NFTVMIIGRVIQGIGGGGLMAlTEILITDLVPLrlRGDWMGLLSVMWSLGSVT--GPVIGGAFAEKATWRWIFYINLP--FIGLGAPMVWF----FLKM 227
                 **************988765427899****87511567999999987765555..9*****************99865..577777889*9....5788 PP

       TRI12 226 hgkkvrkreelakldwigiilvivgvslfllgvswggkpnspwnsakviglissglgslvvfalyevygkpvrpivppalfkdtrgfvcillissimga 324
                   k  +  ++l ++dw+gi+l i+  + fl+ v+wgg     w+s + +  +  g+  +  f ++e y    + ++  ++f++t   v+ +  +++ g 
  KKY23475.1 228 NFKESALLDKLRRVDWVGIFLFIASSTSFLVPVTWGGVM-YAWDSWHTLVPLLVGIAGIAAFVVWEGYFAT-ETLIRLSIFRETTAKVAYF-TTTLHGL 323
                 9999*********************************86.579999988888899999*********9865.5799*********999865.6788899 PP

       TRI12 325 mnlslviiypqqvvnifgsslknweetawmsatasfgtgagvvvlgslfhlvrhirwqilvgalwltaflgamssvnrdnkn.aaialsvlsgfvvawa 422
                 +  ++    p     + g s       a +  t ++   a   v g l+    + r+ i++g +  t   g ++ ++      a i  +++ g+ ++  
  KKY23475.1 324 ILWCILYYLPLYYEAVQGYSPI-ISGVAIFPGTFTVAPLA--AVTGILITKTGQYRYFIIIGWVITTVGGGLLTLLDVHTSIpAWIFETLIVGIGIGIL 419
                 8888888888887777777743.45566666655544444..456888888999999999998887777777777766554414455667778888887 PP

       TRI12 423 qditmllvqfittdedlgvafavvaaarpfagsiftaafislysnrypkelashlssalrgtdipq 488
                      + vq   t++d+  a+++ a  r f  +i  a    ++ n+   +l  + + a + +++ +
  KKY23475.1 420 FPALTFAVQASNTEQDMAFAVSMFAFFRTFGQAIGVAIGGVVFQNQMRAKLHKYPAFASQASELAK 485
                 77778899**************************99999999999999888877777666666655 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   8.2     7e-19   2.5e-15      44     188 ..      83     221 ..      12     226 .. 0.85
   2 !    6.8   9.1   0.00072       2.6      63     161 ..     363     461 ..     345     484 .. 0.84
   3 ?   -2.7   0.0      0.56     2e+03     221     262 ..     488     526 ..     466     534 .. 0.52

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 7e-19
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                 s++   ++  +fl+ +++ + ++  l+++fGR++ + ++ ++f++ga++ a++k   ++ v+i+gRv+ Gig G+  +l+ ++i  + p +lRg  ++l
  KKY23475.1  83 SAIEAFWTGTAFLLASAVIQPLIASLSHIFGRRPMMFVSLAFFLAGALVAALCK---NFTVMIIGRVIQGIGGGGLMALTEILITDLVPLRLRGDWMGL 178
                 5555666667777777777777788*****************************...****************************************** PP

                 HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsnadgwrillglqlvpallllill 188
                   +++++G + + ++g ++++      wr+ ++++l +  l + ++
  KKY23475.1 179 LSVMWSLGSVTGPVIGGAFAEKAT---WRWIFYINLPFIGLGAPMV 221
                 *******************99888...9999999988766665554 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00072
                 HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  63 slfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl 161
                 ++++ l++++  +++ ++i+ v++ +g+ l  + +  +s+ + i+  ++vGig+G+     +  ++   +++   + vs++ ++ tfG+ ++  +g ++
  KKY23475.1 363 AVTGILITKTGQYRYFIIIGWVITTVGGGLLTLLDVHTSIPAWIFETLIVGIGIGILFPALTFAVQASNTEQDMAFAVSMFAFFRTFGQAIGVAIGGVV 461
                 4455555555558999999*******************************************999999999999****************998887555 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.56
                 HHHHHHHHHHHHHHHH......HTTHHHHSH...HHHHHHHHH CS
    Sugar_tr 221 drelaeekdsleaeqeee.kaswkellssktvrqrlligvvlq 262
                 +  ++ +k+++ +e+ ++ ++++k+ +s        +++++l 
  KKY23475.1 488 TSLVQIIKSMNGHEDLKQeQHDLKQAFSDSV----QTVWIMLT 526
                 3333333333334433336777777777722....23333333 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.9   0.00024      0.86     132     192 ..     138     198 ..     125     210 .. 0.93
   2 ?    8.7   0.8   0.00013      0.45     139     257 ..     409     563 ..     395     582 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00024
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 132 vllfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslll 192
                 +++++++ +++GiG+  +++l    i D v  +     +g+l++++ lG + G ++G++++
  KKY23475.1 138 FTVMIIGRVIQGIGGGGLMALTEILITDLVPLRLRGDWMGLLSVMWSLGSVTGPVIGGAFA 198
                 569*****************************************************99886 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00013
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxx.................. RF
        OATP 139 qlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllklyvdids.............eisltp.................. 206
                  l++GiG   +++  +  +  + +++++++ ++++ ++r++G a+G ++G+++ +  +  +                   +                  
  KKY23475.1 409 TLIVGIGIGILFPALTFAVQASNTEQDMAFAVSMFAFFRTFGQAIGVAIGGVVFQNQMRAKLhkypafasqaselA----Kdatslvqiiksmnghedl 503
                 56777777777776666677777889999***********************999887774455776666655441....1445566666677777777 PP

                 .........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 207 .........kdprWvgaWWlgflilgvllllaaiplffFPkelpkkkeerakkkseeesa 257
                            +  v   W+   +l+ ++ll++ ++ +FP   + ++e+  ++k +e++ 
  KKY23475.1 504 kqeqhdlkqAFSDSVQTVWIMLTCLAGVCLLLSWWIKSFPLDRELETEQGFRHKGSETQV 563
                 776666654445567777999999999999999999999977444444444433333322 PP

>> Phage_holin_2_3  Bacteriophage holin family HP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2   0.00022      0.79      10      35 ..     345     370 ..     337     373 .. 0.91
   2 ?    0.7   0.2      0.13   4.6e+02      30      41 ..     416     427 ..     412     432 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00022
  Phage_holin_2_3  10 isSavavvlGllsLseWAiviGIicg 35 
                      i S+va+  G ++ +  A+v+GI+++
       KKY23475.1 345 IISGVAIFPGTFTVAPLAAVTGILIT 370
                      679*********************98 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.13
  Phage_holin_2_3  30 iGIicgvvTfli 41 
                      iGI++ ++Tf++
       KKY23475.1 416 IGILFPALTFAV 427
                      8*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       830  (0.0462937); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.36s 00:00:01.14 Elapsed: 00:00:00.53
# Mc/sec: 3324.18
//
Query:       KKY23476.1  [L=489]
Description: putative acetylornithine aminotransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     1e-110  370.2   0.0   1.3e-110  369.9   0.0    1.1  1  Aminotran_3    Aminotransferase class-III
  ------ inclusion threshold ------
      0.012   14.8   0.0      0.024   13.8   0.0    1.5  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  369.9   0.0  1.4e-114  1.3e-110      11     405 ..      83     466 ..      74     467 .. 0.95

  Alignments for each domain:
  == domain 1  score: 369.9 bits;  conditional E-value: 1.4e-114
                  EEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHH....HHHCT-...SEEEEESSHHHHHHHH CS
  Aminotran_3  11 lvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekl....lklapk.gldkvflansGseAvetA 103
                   v+ k+eG+y++d +++rylD++++iav++lGh+++ +v+ +++q ++l h+s ++++n+ + +l++ l     k+ p+ +l++vf++nsGseA+e+A
   KKY23476.1  83 PVMVKGEGCYIWDMENHRYLDFTAGIAVNALGHCDEGMVNWMAQQSETLIHCS-NLYHNAWTPELSKLLinetKKADPNsNLSQVFICNSGSEANEAA 179
                  5789*************************************************.99999999999999955433333432477*************** PP

                  HHHHHHHHHHTS.HCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-S CS
  Aminotran_3 104 lKlarkyarekk.atektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEp 200
                  lK+ark +++k+ +  kt i++f+++fHGrt+g+ls+t + kky++ fgp++p++ +  y+d                 ++a+ + ++d++++vi+Ep
   KKY23476.1 180 LKFARKVSYSKDpNSGKTDIVSFHNSFHGRTFGSLSATPN-KKYQAPFGPMVPGFRYGTYND-----------------ISAIADLITDKTCGVIIEP 259
                  ***********9999*************************.********************9.................88888999*********** PP

                  CETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEE.EHHHHTTS-TTSB--TTTT-HHH CS
  Aminotran_3 201 iqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgGlplsavla.taevmqalapgshgsTfgGnpla 297
                  iqgegG+++a+ efl++lr+ c++ d++li+DE+q+G++rTG ++++   gv+pD++t+aKal++G+p+ a+l+ + +v q +++g+hg+TfgGnpla
   KKY23476.1 260 IQGEGGINIATTEFLQALRKRCDEVDAILIFDEIQCGLSRTGSFWGYIPSGVQPDIITTAKALGNGFPIGATLVsESAVTQHIKTGDHGTTFGGNPLA 357
                  *********************************************************************99986156899****************** PP

                  HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-.TTEEEEEEETTEEEEEEBCCCETTCHHHHHHHHHCTEE-EEETTTEEEE---TT--HHH CS
  Aminotran_3 298 cavalavleiieeekllenaqelgaalkegLeelqkky.evikevRgkGlmiaielkeeaevkekeilkkakekGvlilsaGdnvirllppliitdee 394
                  c++a++++  ++  +l+  +q +   +k++  +   ky  v++e Rg+Gl+i++ + e+ + k +e++++a+e G+l+++aG   +r++ppl+it+ee
   KKY23476.1 358 CRLAHYIVSRLASPDLQLGVQSKLTPFKSAFDSWTRKYpGVFSEFRGRGLIIGFQFAEKYHDKAAELVTAARERGLLVITAGTGCLRIVPPLTITEEE 455
                  **************************************99*********************999********************************** PP

                  HHHHHHHHHHH CS
  Aminotran_3 395 idelleilkka 405
                  i e+leil++a
   KKY23476.1 456 IGEGLEILEEA 466
                  ********987 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.7e-06     0.024     130     261 ..     239     366 ..     230     463 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-06
                    E-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--.B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHH.HGGSTTSTTEEEEEESSSTT CS
  Aminotran_1_2 130 ldlealeealkeapegnkktkvilvesphNPtGt.vatleeleklldlakkynlllfvDeaYagfvfgsldavat.ranveeepnllivgslsKaf 223
                    +d+ a+ +++++      kt+++++e ++   G  +at e l++l + +++  ++l++De+  g+  +  +++    ++v++++      + +Ka+
     KKY23476.1 239 NDISAIADLITD------KTCGVIIEPIQGEGGInIATTEFLQALRKRCDEVDAILIFDEIQCGLSRT-GSFWGYiPSGVQPDII-----TTAKAL 322
                    899999*****9......9***********999747899**********************9998888.5788866788888766.....89**** PP

                    SSGGG-EEEEEE.EHHHHHHHHHHHHHHTS......SHHHHHHHH CS
  Aminotran_1_2 224 GlaGeRvGyilg.naavvsqlrklsrpfls......ssllqaava 261
                    G  G+ +G++l+  +av ++++    + ++      + l+ ++v+
     KKY23476.1 323 G-NGFPIGATLVsESAVTQHIKTGDHGTTFggnplaCRLAHYIVS 366
                    9.699*******566888888877777777764444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3564.46
//
Query:       KKY23477.1  [L=823]
Description: putative non-specific serine threonine protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-13   50.7   0.0    3.5e-12   46.5   0.0    2.5  2  PAS_9     PAS domain
    0.00081   19.4   0.0     0.0028   17.7   0.0    1.9  1  PAS       PAS fold
  ------ inclusion threshold ------
       0.01   16.1   0.0      0.075   13.3   0.0    2.5  3  PAS_4     PAS fold
       0.18   10.3   0.5       0.35    9.4   0.5    1.4  1  Macoilin  Macoilin family


Domain annotation for each model (and alignments):
>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   7.8e-16   3.5e-12      20     103 ..     319     402 ..     315     403 .. 0.98
   2 ?    1.3   0.0     0.088     4e+02       9     101 ..     533     628 ..     524     629 .. 0.59

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 7.8e-16
       PAS_9  20 alrllGyspeevlgksitdlf..vtdpeanerlraaleqgrkkerevevvlirkngetfwvlltaspvkdddgelvgiivilrDit 103
                 + r++Gy++++vlg++++ l+   ++p a  rlr+ale g+  e ++ + ++r++g+ f + l++sp+ dd+g+++ + + ++D++
  KKY23477.1 319 FYRMTGYNRDQVLGRNCRVLQgyRKEPPAVLRLRRALEHGE--EITEAILNYRRDGSAFVNCLNVSPLLDDKGKVRYWFGAQVDVS 402
                 78***************************************..*****************99**********************98 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.088
       PAS_9   9 pdgrilyaNeaalrllGyspeevlgksitdlf.vtdpeanerlraaleqgrk....kerevevvlirkngetfw.vl.ltaspvkdddgelvgiivilr 100
                  ++ri++ +++++ l     +e+l+ ++   + ++d+  ++ ++ +++ + +     ++ ++ +  ++ ++    ++ l+a+p++ +d+++  +++il+
  KKY23477.1 533 ASFRITFLSPSLRHL----GKELLQSRFLSHItASDSVVANLKQCLMNGLPTtakiRFHKGDADSDDSGNSSRQaTKcLSATPLFGSDDRVGVWVIILV 627
                 556666666666666....36666666666664344444444444444444466665555555555555533332556899999999999999999999 PP

       PAS_9 101 D 101
                 D
  KKY23477.1 628 D 628
                 8 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   6.2e-07    0.0028      32     109 ..     321     397 ..     317     401 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 6.2e-07
                 HHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-E.CCCCEEEEC.TTSSEEEEEEEEEEEEETTEEEEEEEEE CS
         PAS  32 ellGlsreevlgkslldliheeddaelaelleqlleqgees.rageisfkl.rdgrpihlevraspvrdaggeilgflgv 109
                 +++G++r++vlg++   l    ++   + ++++l+++ e++ ++ e  +++ rdg+ +  ++++sp++d +g++++++g 
  KKY23477.1 321 RMTGYNRDQVLGRNCRVLQ-G-YRK-EPPAVLRLRRALEHGeEITEAILNYrRDGSAFVNCLNVSPLLDDKGKVRYWFGA 397
                 8**************9555.3.333.444444444444444044444444499***********************9986 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.8   1.2e+04      23      48 ..     223     250 ..     220     270 .. 0.66
   2 ?   13.3   0.0   1.7e-05     0.075      26     109 ..     321     405 ..     312     406 .. 0.75
   3 ?   -2.0   0.0      0.93   4.2e+03      12      38 ..     532     554 ..     524     628 .. 0.52

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.8
       PAS_4  23 aaae.lfgappeellGktlaellpee.d 48 
                 a+ + +f a  +++l   l+e lp+   
  KKY23477.1 223 ASTDaYFEAKKKRCLEVLLQEALPAFiT 250
                 5566688888899999999999888753 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.7e-05
       PAS_4  26 elfgappeellGktlaellpee.daarleralrrvlegeepiefleelll.pgeerhyelrllPlrdesGevigvlvisrDiTerr 109
                 ++ g+ ++++lG+ ++ l       ++    lrr+le +e i++++   + +g+  +  l+++Pl+d++G+v+ +++  +D+++++
  KKY23477.1 321 RMTGYNRDQVLGRNCRVL-QGYrKEPPAVLRLRRALEHGEEITEAILNYRrDGSAFVNCLNVSPLLDDKGKVRYWFGAQVDVSNLV 405
                 567888899999999943.3334777778889999998888877774333366666666778********************9865 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.93
       PAS_4  12 dpdgrvlyaNaaaaelfgappeellGk 38 
                 d+ +r+++++++ ++     ++ell +
  KKY23477.1 532 DASFRITFLSPSLRH----LGKELLQS 554
                 666666666666555....33333333 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.5   7.8e-05      0.35     229     348 ..     673     789 ..     641     812 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 7.8e-05
    Macoilin 229 vdpvalsknnhslnkkdsslklpeleyrekkksakssrsdskkkhehnesvdsklqekeymenkskskrlsksessgsesellveesvkskssssssss 327
                  +p  ++ ++h +n+   +l +pe ++ ++++  ++s++ds+  +++++     +q+++ + n+++ k    s  +gs ++l+ ++++   s+ +sss 
  KKY23477.1 673 NPPPLTASRQHMTNSVAYTLATPEFHTPHQEQVPQHSSTDSQDPYQEHD--PLSQQNQQSYRNRLNRKSRRLSYDEGSPESLNGNNHMAGISAHASSS- 768
                 457788999999***99********998888877777777766666444..44556666678888877777777899999999999887766555554. PP

    Macoilin 328 nknskkasagsagssnssskk 348
                 +  ++  +   +g +  +++ 
  KKY23477.1 769 EDAMNGVNVRDIGKADRAPRA 789
                 344444444555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (823 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 5412.96
//
Query:       KKY23478.1  [L=300]
Description: hypothetical protein UCRPC4_g02926 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2315.48
//
Query:       KKY23479.1  [L=667]
Description: putative phospholipid glycerol acyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-27   94.7   0.0    6.5e-27   93.8   0.0    1.5  1  Acyltransferase  Acyltransferase
    9.5e-14   51.3   0.0    2.2e-13   50.1   0.0    1.5  1  Acyltransf_C     Acyltransferase C-terminus


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.0   7.2e-31   6.5e-27      14     134 ..     123     267 ..     101     268 .. 0.87

  Alignments for each domain:
  == domain 1  score: 93.8 bits;  conditional E-value: 7.2e-31
  Acyltransferase  14 gpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleeg...klvviFPEGtrs 104
                      ++++++aNHq+y+D+l+lw+++y+s+++ +++i++k++l +ipl+g++m+ ++fif++R+ ++++ +   ++++ l+      ++ iFPEGt++
       KKY23479.1 123 ERLVFIANHQIYTDWLYLWWIAYASGMHGRIYIVLKESLRRIPLIGWGMQFSKFIFLKRNWEQDKPNLARHLKH-LNDPkepMWLTIFPEGTNL 215
                      689***********************77*******************************555555555555555.443334367********** PP

  Acyltransferase 105 re..................gel.lpfkkGlvrlaakak...kgvpivPvai 134
                                          + + lp ++Gl ++++++k   + v+++++++
       KKY23479.1 216 APstrrasnkwaqkqgindlRHClLPRSTGLHFILEQLKdttEWVYDCTIGY 267
                      9999*************9974447***************99999*****998 PP

>> Acyltransf_C  Acyltransferase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   2.4e-17   2.2e-13       5      55 ..     289     345 ..     288     368 .. 0.86

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 2.4e-17
  Acyltransf_C   5 G.kpsevhiyvrripleevPed.eeelaeWlhelfeeKDklleeFyktgtFe....p 55 
                   G +p+ v +++rr++++++P +  ++  +Wl+ ++ eKD+lle++ ++g+F+     
    KKY23479.1 289 GrRPKSVSMHFRRFKVSSIPLSdANAFDKWLRARWAEKDNLLEYYMQNGQFPadagA 345
                   45899****************978***************************866431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       918  (0.051202); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 4549.71
//
Query:       KKY23480.1  [L=334]
Description: putative phosphoglycerate mutase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-09   38.1   0.0      6e-09   35.9   0.0    2.0  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   3.3e-13     6e-09      17     187 ..      34     238 ..       6     245 .. 0.71

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 3.3e-13
                 ..TT----B-HHHHHHHHHHHHHHTT..S---EE.......EE-SSHHHHHHHHHHHHCTT......--EEE-GGGS---.....-GGGTT-B.HHHHH CS
  His_Phos_1  17 lqgrtdvpLteeGreqAealaerlag..epidai.......ysSplkRarqTaeliaealg......lpveldegLrEid.....fGdweglttaeiae 95 
                  +  +d+pL+++G++q ++la++l +   p+  i       ysS + R+ +T ++  ++l+      l+v+ ++g+ E+      f +   l+  ++++
  KKY23480.1  34 TGLSNDPPLSARGVQQTQELAHHLTSlfTPL--IqanslvvYSSCFYRCLETLKPWVRKLEstqdisLKVRPEPGIGEWYgyssrFTHPRPLSAVDLQS 130
                 45679******************99965333..33367788*****************99999898899999999999741111122222334444555 PP

                 H..HSHHHHHHHHH-GGG-B..........S-BHHHHHHHHHHHHHHHHHHTTTSE...........EEEEE-HHHHHHHHHHHHT--GGGGG..GB-- CS
  His_Phos_1  96 eypeeleawlrdpadvrppg..........gEsledvaaRvaaaleelaarheget...........vlvVsHggvirallarllglpleelr..rlel 171
                 ++  + +++ +        g          gEs+ ++++R+a+ + +++++ e e            +l++ H++++ a+ + l+g  ++e+   ++++
  KKY23480.1 131 KFFPFVDTTYSP-------GpgidlspdphGESISELHDRLARSITHIVHQVEAEYraagnadqdvsLLLCFHAAPMIAAGRVLTGSVPNEWSdeDFHC 222
                 555555554444.......23444455899****************7777666554455566778999**************99999999987345777 PP

                 -TT-EEEEEE-SS-EE CS
  His_Phos_1 172 dnaslsvlefdeggwr 187
                  +a+ls++  +++ ++
  KKY23480.1 223 FTAGLSKFVRNPSSPN 238
                 9999999988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.53
# Mc/sec: 1906.12
//
Query:       KKY23481.1  [L=372]
Description: putative eukaryotic translation initiation factor 3 subunit 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-08   33.1   0.1    1.3e-06   28.4   0.1    2.3  1  JAB       JAB1/Mov34/MPN/PAD-1 ubiquitin protease


Domain annotation for each model (and alignments):
>> JAB  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.1   7.1e-11   1.3e-06       3     114 ..      11     131 ..      10     135 .. 0.73

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 7.1e-11
                 SCEEEEEHHHHHHHHHHHHHHHHHTS--EEEEEEEESSSEEEEEEEEEEESEEEESSECEEEEEHHHHHHHHHHHHHHHC...............TTSE CS
         JAB   3 vqavhleslvllkildhalrtekeeeevmGlliGelnddttveitnvfalpfeetekdvdavsldqeylekksellkklr...............grer 86 
                 ++av++e+lv++ki++h  ++        G l+G+  +  t+eitn f +p  +  +d +   ++ +  +++     k +                + +
  KKY23481.1  11 FKAVQVEGLVVMKIIKHCASKFPT--TATGSLVGLDVNG-TLEITNTFPFPIVDLPQDAHYDGPHPN--TAAAAPRAKANasyqiemirmlrevnVDAN 104
                 589*********************..9*********999.*********998887777666665555..2222111122223444455555555388** PP

                 EEEEEEESSSS-SS--HHHHHHHHHHHH CS
         JAB  87 vvGWYhshpditvwlsevdvrtqalyqr 114
                  vGWY+s      + + + ++ q +yq+
  KKY23481.1 105 NVGWYTSANMG-NFCNLNFIENQYYYQK 131
                 *****998766.7777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 2316.51
//
Query:       KKY23482.1  [L=684]
Description: putative pre-mrna-splicing factor clf1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-24   82.3  25.0     0.0025   18.5   0.2   11.6 12  TPR_14           Tetratricopeptide repeat
    3.8e-22   78.6   0.4    1.1e-05   25.9   0.0    7.5  8  TPR_19           Tetratricopeptide repeat
    9.3e-21   73.5  83.2    2.6e-13   49.7   4.4   13.5 14  HAT              HAT (Half-A-TPR) repeat
    4.8e-13   49.8  24.7     0.0034   17.4   0.3    7.1  6  Suf              Suppressor of forked protein (Suf)
    1.8e-10   40.4   2.1      0.033   14.5   0.0    6.9  6  TPR_17           Tetratricopeptide repeat
    1.5e-08   35.2  16.6       0.11   13.2   0.1    7.5  7  TPR_16           Tetratricopeptide repeat
    1.6e-08   34.0  19.2        0.5   10.6   0.5    9.1 10  TPR_2            Tetratricopeptide repeat
    7.2e-08   32.1  10.3         12    6.4   0.0    9.1  9  TPR_8            Tetratricopeptide repeat
    2.5e-07   30.9  17.9       0.88   10.3   0.1    8.8  8  TPR_6            Tetratricopeptide repeat
    7.3e-05   22.1  16.5       0.75    8.9   2.7    5.9  5  TPR_15           Tetratricopeptide repeat
    0.00054   20.0   5.9         15    5.8   0.1    5.9  6  TPR_9            Tetratricopeptide repeat
     0.0044   17.0  23.1      0.054   13.6   2.2    6.7  8  U3_assoc_6       U3 small nucleolar RNA-associated protein 6
  ------ inclusion threshold ------
      0.016   14.3   0.4       0.13   11.3   0.1    2.5  2  ECSIT            Evolutionarily conserved signalling intermed
       0.02   15.1   1.9        6.1    7.1   0.0    4.4  4  ANAPC3           Anaphase-promoting complex, cyclosome, subun
      0.022   13.9  26.0        1.8    7.6   0.0    6.6  4  NRDE-2           NRDE-2, necessary for RNA interference
      0.037   14.1   8.3        8.8    6.5   0.3    5.5  7  Fis1_TPR_C       Fis1 C-terminal tetratricopeptide repeat
      0.045   13.6   9.8         20    5.2   0.2    6.0  6  TPR_1            Tetratricopeptide repeat
       0.27   11.5  19.3          4    7.8   0.1    7.1  7  TPR_12           Tetratricopeptide repeat
       0.53   10.4  15.9          2    8.6   0.1    6.8  8  TPR_7            Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1       2.1     2e+03      19      32 ..      21      35 ..      16      47 .. 0.73
   2 !   18.5   0.2   2.7e-06    0.0025       4      43 ..      75     114 ..      72     115 .. 0.95
   3 !    9.9   0.0    0.0016       1.5       3      42 ..     108     147 ..     107     149 .. 0.93
   4 ?    5.3   0.0     0.047        44       2      41 ..     141     179 ..     140     182 .. 0.82
   5 ?    6.0   0.0     0.027        26       2      43 ..     174     214 ..     173     215 .. 0.89
   6 !   11.4   0.3   0.00048      0.46       6      42 ..     248     284 ..     244     286 .. 0.91
   7 !   16.0   0.1   1.7e-05     0.016       3      42 ..     323     364 ..     321     366 .. 0.81
   8 !    8.3   0.1    0.0048       4.5      11      43 ..     375     411 ..     364     412 .. 0.79
   9 ?    6.9   0.0     0.014        14       2      36 ..     404     438 ..     403     445 .. 0.91
  10 ?    2.5   0.0      0.36   3.4e+02       7      44 .]     442     479 ..     437     479 .. 0.85
  11 ?    4.4   0.3     0.088        83       2      29 ..     471     498 ..     470     507 .. 0.85
  12 !   16.0   0.0   1.7e-05     0.016       3      43 ..     508     547 ..     505     548 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 2.1
      TPR_14 19 eAiallrralal.aP 32
                 A++llr+a+++  P
  KKY23482.1 21 SAEQLLREAVDRqEP 35
                69*******995145 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 2.7e-06
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 ++++a+ +l++ ++++A+ +++ral+ + ++ ++w+++++
  KKY23482.1  75 WMRYAQWELEQKEFRRARSIFERALDVDSTSVTLWIRYVE 114
                 99***********************************987 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.0016
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 ++ +++ea++  ++   A++ll+ra+   P  + +w+ ++
  KKY23482.1 108 LWIRYVEAEMKTRNINHARNLLDRAVTILPRVDKLWYKYV 147
                 6999********************************9886 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.047
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlll 41 
                 +++++++  ++ lG+ ++ +a+++r+ + +  d++aw ++
  KKY23482.1 141 KLWYKYVYMEEMLGNIQGTRAVFERWMS-WEPDEAAWSAY 179
                 58***********************977.44446777665 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.027
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +a+ a+ + + +  ++d A+ +++r    +P+ ++ w+ +a+
  KKY23482.1 174 AAWSAYIKMEKRYNEFDNARSIFERFTIVHPE-PRNWIKWAR 214
                 69***********************9999998.788877776 PP

  == domain 6  score: 11.4 bits;  conditional E-value: 0.00048
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaeawllla 42 
                 a+a++++ l ++d+A+a+++ al++ P ++ + l+ a
  KKY23482.1 248 AYAKYEAKLKEYDRARAVYKFALDRLPRSRSVALHKA 284
                 89**************************999988877 PP

  == domain 7  score: 16.0 bits;  conditional E-value: 1.7e-05
      TPR_14   3 allalaeallalGdpdeAiallrralalaP.dda.eawllla 42 
                 ++ ++a++++  Gd d+ +++++ra+a  P +++ + w+++ 
  KKY23482.1 323 LWFDYARLEESGGDVDRIRDVYERAIAEIPpSQEkRHWRRYI 364
                 89************************9765343336777765 PP

  == domain 8  score: 8.3 bits;  conditional E-value: 0.0048
      TPR_14  11 llalGdpdeAiallrralalaP....ddaeawlllaq 43 
                 +++++d ++A+++++++l+l P    ++a +wl+ aq
  KKY23482.1 375 EMENRDVERARQIYQECLKLIPhrkfTFAKVWLMKAQ 411
                 46799**************999666666999999998 PP

  == domain 9  score: 6.9 bits;  conditional E-value: 0.014
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddae 36 
                 +++l+ a+++ ++ ++++A++ l +a+  +P+d  
  KKY23482.1 404 KVWLMKAQFEIRQLQLQAARKTLGQAIGMCPKDKL 438
                 68*****************************9865 PP

  == domain 10  score: 2.5 bits;  conditional E-value: 0.36
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 + e++ +l ++ + ++l+++ l+ +P++ +aw + a+l
  KKY23482.1 442 YIELEKQLFEFVRCRTLFEKQLEWNPSNTQAWVEFAEL 479
                 66777788889999*********99*******998875 PP

  == domain 11  score: 4.4 bits;  conditional E-value: 0.088
      TPR_14   2 eallalaeallalGdpdeAiallrrala 29 
                 +a+ + ae+++ l+d+++A+a+++  ++
  KKY23482.1 471 QAWVEFAELERGLEDFERARAIYELGVD 498
                 58999999999************98866 PP

  == domain 12  score: 16.0 bits;  conditional E-value: 1.7e-05
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +++ + ++++  G++d+A+al++r+l++  d+  +w  +a+
  KKY23482.1 508 LWKSYIDFEEYEGNYDRARALYERLLKKT-DHVKVWVNYAR 547
                 5889999********************54.67899999997 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.1e-08   1.1e-05       2      52 ..      83     133 ..      82     145 .. 0.94
   2 ?    5.8   0.0     0.021        20      10      62 ..     125     177 ..     125     182 .. 0.91
   3 ?    0.0   0.0       1.3   1.3e+03       7      46 ..     156     194 ..     152     200 .. 0.51
   4 ?    2.5   0.1      0.22   2.1e+02      27      57 ..     245     275 ..     235     285 .. 0.67
   5 !    7.5   0.0    0.0062       5.9      14      43 ..     310     339 ..     306     356 .. 0.79
   6 !   14.5   0.0     4e-05     0.038       2      51 ..     376     429 ..     375     440 .. 0.93
   7 !    8.4   0.0    0.0033       3.1      13      49 ..     458     494 ..     456     507 .. 0.89
   8 !    8.1   0.0    0.0041       3.9       4      35 ..     519     549 ..     518     552 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.1e-08
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalp 52 
                 l+++ + +A +++e+al+ d  +  ++++++ea +++ +++ A++lLd++ 
  KKY23482.1  83 LEQKEFRRARSIFERALDVDSTSVTLWIRYVEAEMKTRNINHARNLLDRAV 133
                 89**********************************************986 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.021
      TPR_19  10 AlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddarya 62 
                 A +ll +a +  p  + +++ ++     lg+++  +a+ ++ + ++pd+a+++
  KKY23482.1 125 ARNLLDRAVTILPRVDKLWYKYVYMEEMLGNIQGTRAVFERWMSWEPDEAAWS 177
                 7899********************************************65554 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 1.3
      TPR_19   7 yaeAlalleqalqedpknaearllLAeallalgqldeAea 46 
                  +   a +e+ ++ +p+ a+  + +++     +++d A+ 
  KKY23482.1 156 IQGTRAVFERWMSWEPDEAAWSA-YIKMEKRYNEFDNARS 194
                 44444555555555553333333.5555555566666655 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.22
      TPR_19  27 arllLAeallalgqldeAealLdalpeedpd 57 
                 + +++A+   +l+++d A+a+ + +++  p 
  KKY23482.1 245 IFIAYAKYEAKLKEYDRARAVYKFALDRLPR 275
                 5666677777777777777776655555555 PP

  == domain 5  score: 7.5 bits;  conditional E-value: 0.0062
      TPR_19  14 leqalqedpknaearllLAeallalgqlde 43 
                 +++  +e+pkn +++ ++A++  + g++d 
  KKY23482.1 310 YAESVKENPKNYDLWFDYARLEESGGDVDR 339
                 445579***************999999886 PP

  == domain 6  score: 14.5 bits;  conditional E-value: 4e-05
      TPR_19   2 laegdyaeAlalleqalqedpk....naearllLAeallalgqldeAealLdal 51 
                 +++ d ++A +++++ l+  p+     a ++l  A+  + + ql++A+++L ++
  KKY23482.1 376 MENRDVERARQIYQECLKLIPHrkftFAKVWLMKAQFEIRQLQLQAARKTLGQA 429
                 7899***********************************************876 PP

  == domain 7  score: 8.4 bits;  conditional E-value: 0.0033
      TPR_19  13 lleqalqedpknaearllLAeallalgqldeAealLd 49 
                 l+e+ l+ +p n  a+   Ae+   l +++ A+a+ +
  KKY23482.1 458 LFEKQLEWNPSNTQAWVEFAELERGLEDFERARAIYE 494
                 78999*****************************976 PP

  == domain 8  score: 8.1 bits;  conditional E-value: 0.0041
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeal 35 
                 eg+y++A al+e++  ++ ++  ++ ++A+  
  KKY23482.1 519 EGNYDRARALYERL-LKKTDHVKVWVNYARFE 549
                 89***********6.55588999999999865 PP

>> HAT  HAT (Half-A-TPR) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   1.0    0.0012       1.1      18      30 ..      70      82 ..      54      84 .. 0.78
   2 !   19.0   0.1   1.1e-06     0.001       1      26 [.      86     112 ..      86     116 .. 0.94
   3 ?    1.9   0.1      0.24   2.2e+02       3      31 ..     122     151 ..     120     152 .. 0.86
   4 ?   -0.1   0.1      0.97   9.1e+02       6      30 ..     159     183 ..     155     185 .. 0.81
   5 !   49.7   4.4   2.8e-16   2.6e-13       2      32 .]     188     218 ..     187     218 .. 0.97
   6 !    6.8   0.3    0.0072       6.8       1      11 [.     257     267 ..     257     269 .. 0.93
   7 ?    2.1   0.0       0.2   1.9e+02      23      32 .]     324     333 ..     318     333 .. 0.89
   8 ?    4.2   0.8     0.045        43       3      12 ..     337     346 ..     336     349 .. 0.88
   9 ?   -2.5   1.2       5.7   5.4e+03      23      31 ..     367     375 ..     365     376 .. 0.93
  10 !    6.6   0.0    0.0082       7.8       2      12 ..     380     390 ..     379     413 .. 0.85
  11 ?   -0.3   0.2       1.1   1.1e+03       5      30 ..     454     480 ..     451     481 .. 0.70
  12 ?    4.2   0.1     0.045        43       3      11 ..     486     494 ..     484     497 .. 0.88
  13 !   22.3   1.3   9.7e-08   9.1e-05       4      30 ..     523     549 ..     521     551 .. 0.96
  14 ?   -3.0   0.6         8   7.6e+03       5      12 ..     574     581 ..     573     582 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0012
                --HHHHHHHHHHH CS
         HAT 18 peVkNWikyArFE 30
                ++ +NW++yA++E
  KKY23482.1 70 INMNNWMRYAQWE 82
                99********998 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1.1e-06
                 --HHHHHHHHHHHHHHS.--HHHHHHH CS
         HAT   1 kEidRAReiYeRFvvVH.peVkNWiky 26 
                 kE  RAR+i+eR + V    V+ Wi+y
  KKY23482.1  86 KEFRRARSIFERALDVDsTSVTLWIRY 112
                 8999**********************9 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHHS--H.HHHHHHHHHHH CS
         HAT   3 idRAReiYeRFvvVHpeV.kNWikyArFEE 31 
                 i+ AR+  +R v + p V k W ky   EE
  KKY23482.1 122 INHARNLLDRAVTILPRVdKLWYKYVYMEE 151
                 889*************99456***998888 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.97
                 HHHHHHHHHHHS--HHHHHHHHHHH CS
         HAT   6 AReiYeRFvvVHpeVkNWikyArFE 30 
                  R ++eR++   p+   W  y + E
  KKY23482.1 159 TRAVFERWMSWEPDEAAWSAYIKME 183
                 699*****99999988888887777 PP

  == domain 5  score: 49.7 bits;  conditional E-value: 2.8e-16
                 -HHHHHHHHHHHHHHS--HHHHHHHHHHHHH CS
         HAT   2 EidRAReiYeRFvvVHpeVkNWikyArFEEe 32 
                 E d AR+i+eRF  VHpe +NWik+ArFEEe
  KKY23482.1 188 EFDNARSIFERFTIVHPEPRNWIKWARFEEE 218
                 89****************************7 PP

  == domain 6  score: 6.8 bits;  conditional E-value: 0.0072
                 --HHHHHHHHH CS
         HAT   1 kEidRAReiYe 11 
                 kE dRAR +Y+
  KKY23482.1 257 KEYDRARAVYK 267
                 8*********5 PP

  == domain 7  score: 2.1 bits;  conditional E-value: 0.2
                 HHHHHHHHHH CS
         HAT  23 WikyArFEEe 32 
                 W  yAr EE+
  KKY23482.1 324 WFDYARLEES 333
                 99*******6 PP

  == domain 8  score: 4.2 bits;  conditional E-value: 0.045
                 HHHHHHHHHH CS
         HAT   3 idRAReiYeR 12 
                 +dR R++YeR
  KKY23482.1 337 VDRIRDVYER 346
                 79******** PP

  == domain 9  score: -2.5 bits;  conditional E-value: 5.7
                 HHHHHHHHH CS
         HAT  23 WikyArFEE 31 
                 Wi yA +EE
  KKY23482.1 367 WIFYALWEE 375
                 ********9 PP

  == domain 10  score: 6.6 bits;  conditional E-value: 0.0082
                 -HHHHHHHHHH CS
         HAT   2 EidRAReiYeR 12 
                  ++RAR+iY+ 
  KKY23482.1 380 DVERARQIYQE 390
                 589******95 PP

  == domain 11  score: -0.3 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHS.--HHHHHHHHHHH CS
         HAT   5 RAReiYeRFvvVH.peVkNWikyArFE 30 
                 R R  +e+ +     + + W+ +A  E
  KKY23482.1 454 RCRTLFEKQLEWNpSNTQAWVEFAELE 480
                 5566666666555458899*****876 PP

  == domain 12  score: 4.2 bits;  conditional E-value: 0.045
                 HHHHHHHHH CS
         HAT   3 idRAReiYe 11 
                  +RAR iYe
  KKY23482.1 486 FERARAIYE 494
                 59******9 PP

  == domain 13  score: 22.3 bits;  conditional E-value: 9.7e-08
                 HHHHHHHHHHHHHS--HHHHHHHHHHH CS
         HAT   4 dRAReiYeRFvvVHpeVkNWikyArFE 30 
                 dRAR  YeR +     Vk W+ yArFE
  KKY23482.1 523 DRARALYERLLKKTDHVKVWVNYARFE 549
                 9*************************9 PP

  == domain 14  score: -3.0 bits;  conditional E-value: 8
                 HHHHHHHH CS
         HAT   5 RAReiYeR 12 
                 RAR i+ R
  KKY23482.1 574 RARAIFVR 581
                 9****977 PP

>> Suf  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   4.0   1.9e-05     0.018      20     141 ..      57     194 ..      53     201 .. 0.88
   2 !    8.9   0.1    0.0014       1.3      69     127 ..     172     226 ..     160     230 .. 0.69
   3 !   17.4   0.3   3.6e-06    0.0034      69     128 ..     242     300 ..     238     319 .. 0.85
   4 ?    2.3   0.1      0.14   1.3e+02      85     106 ..     336     369 ..     313     444 .. 0.62
   5 !   13.8   0.2   4.5e-05     0.043      21     126 ..     456     558 ..     452     563 .. 0.76
   6 !    8.5   0.1    0.0019       1.8      88     140 ..     574     629 ..     568     643 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.9e-05
         Suf  20 aRkvFkkARkkprltyevyvasAllEyyiskdkkvAtkIFelGlKkFpedeefvlkYldyLislnddnnaRvlfekvvsklskeke............. 105
                  Rk F++   ++r++ + ++  A+ E   +k+ + A+ IFe++l   +++    ++Y++  ++  + n aR l++++v+ l   ++             
  KKY23482.1  57 KRKEFEDYVRRNRINMNNWMRYAQWELE-QKEFRRARSIFERALDVDSTSVTLWIRYVEAEMKTRNINHARNLLDRAVTILPRVDKlwykyvymeemlg 154
                 5777888888888888888999999999.899999********************************************999999999*********** PP

         Suf 106 ....akelykkfleyestfgdlssilklekRmeelfpeds 141
                     ++ ++++++++e      s+ +k+ekR++e  +  s
  KKY23482.1 155 niqgTRAVFERWMSWEPDEAAWSAYIKMEKRYNEFDNARS 194
                 ***999*************************998755555 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0014
         Suf  69 deefvlkYldyLislnddnnaRvlfekvvsklskekeakelykkfleyestfgdlssil 127
                 de+   +Y++   + n+ +naR++fe+    + +e+     + k++++e + g  + + 
  KKY23482.1 172 DEAAWSAYIKMEKRYNEFDNARSIFERFT-IVHPEP---RNWIKWARFEEENGTSDHVR 226
                 44445678888888999999999999863.333334...34999999999988887775 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 3.6e-06
         Suf  69 deefvlkYldyLislnddnnaRvlfekvvsklskekeakelykkfleyestfgdlssilk 128
                 de+  ++Y +y  +l + ++aR+++  ++ +l   + +  l k +  +e++fgd + +  
  KKY23482.1 242 DEKIFIAYAKYEAKLKEYDRARAVYKFALDRLPRSR-SVALHKAYTTFEKQFGDREGVED 300
                 4556679*****************************.****************9877765 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.14
         Suf  85 ddnnaRvlfekvvsklskeke............a 106
                 d++++R ++e++++++ + +e             
  KKY23482.1 336 DVDRIRDVYERAIAEIPPSQEkrhwrryiylwiF 369
                 6667777777777776666644444443333330 PP

  == domain 5  score: 13.8 bits;  conditional E-value: 4.5e-05
         Suf  21 RkvFkkARkkprltyevyvasAllEyyiskdkkvAtkIFelGlKkFped.ee.fvlkYldyLislnddnnaRvlfekvvsklskekeakelykkfleye 117
                 R+ F+k  + +  + + +v++A lE   + d + A+ I+elG+ +   d +e     Y+d+     + ++aR+l+e++++k  + k    ++  ++++e
  KKY23482.1 456 RTLFEKQLEWNPSNTQAWVEFAELERGLE-DFERARAIYELGVDQPDLDmPElLWKSYIDFEEYEGNYDRARALYERLLKKTDHVK----VWVNYARFE 549
                 66677766777777889999999999955.55559999999998876552341445799999999999999999999998877777....999999999 PP

         Suf 118 stfgdlssi 126
                  +  d +s+
  KKY23482.1 550 INVPDEAST 558
                 998776655 PP

  == domain 6  score: 8.5 bits;  conditional E-value: 0.0019
         Suf  88 naRvlfekvvsklskeke...akelykkfleyestfgdlssilklekRmeelfped 140
                 +aR++f ++ +  +++k      +l + +l++e+t+g+ + i k+ek+    +++ 
  KKY23482.1 574 RARAIFVRAHKLYKSQKSvqnRVDLLAAWLSFEQTHGSPEDIEKIEKQTPRRVKKR 629
                 688888888777666665555789***********************988777764 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.37   3.5e+02       2      19 ..      95     112 ..      94     133 .. 0.85
   2 ?    0.7   0.1      0.94   8.8e+02      18      34 .]     248     264 ..     244     264 .. 0.87
   3 !   14.5   0.0   3.5e-05     0.033       2      33 ..     310     341 ..     309     342 .. 0.90
   4 ?    2.0   0.0      0.35   3.3e+02      11      34 .]     401     424 ..     387     424 .. 0.74
   5 !   11.1   0.0   0.00045      0.43       1      33 [.     458     490 ..     458     491 .. 0.92
   6 ?    1.6   0.0      0.48   4.5e+02       9      23 ..     535     549 ..     528     552 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.37
      TPR_17   2 ylkaleldPnnadaynnL 19 
                 +++al+ d +++ ++  +
  KKY23482.1  95 FERALDVDSTSVTLWIRY 112
                 8*************9877 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.94
      TPR_17  18 nLAelllknGdlmtArq 34 
                  +A++ +k++++++Ar+
  KKY23482.1 248 AYAKYEAKLKEYDRARA 264
                 699999*********95 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 3.5e-05
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 y ++++ +P+n d+++ +A+l ++ Gd ++ r
  KKY23482.1 310 YAESVKENPKNYDLWFDYARLEESGGDVDRIR 341
                 77899*****************9999988765 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.35
      TPR_17  11 nnadaynnLAelllknGdlmtArq 34 
                 + a+++ ++A++  ++ +l+ Ar+
  KKY23482.1 401 TFAKVWLMKAQFEIRQLQLQAARK 424
                 3599********999999999985 PP

  == domain 5  score: 11.1 bits;  conditional E-value: 0.00045
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 l++k le +P+n  a+ + Ael + + d+++Ar
  KKY23482.1 458 LFEKQLEWNPSNTQAWVEFAELERGLEDFERAR 490
                 577779**************************8 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.48
      TPR_17   9 dPnnadaynnLAell 23 
                   ++++++ n+A++ 
  KKY23482.1 535 KTDHVKVWVNYARFE 549
                 44679*******975 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0077       7.3       8      54 ..      83     126 ..      78     140 .. 0.72
   2 ?   -1.3   0.0       3.8   3.6e+03       9      59 ..     118     165 ..     113     166 .. 0.75
   3 !    8.3   1.3    0.0038       3.6       4      40 ..     250     283 ..     248     290 .. 0.83
   4 !    7.7   0.0    0.0059       5.6      23      65 ..     310     352 ..     304     355 .. 0.83
   5 ?    0.5   0.0         1   9.8e+02       8      57 ..     376     427 ..     372     436 .. 0.61
   6 ?    1.1   0.0      0.68   6.4e+02      31      59 ..     467     495 ..     459     501 .. 0.80
   7 !   13.2   0.1   0.00011      0.11      11      42 ..     520     547 ..     517     556 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0077
      TPR_16   8 lragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa 54 
                 l+++++++A+  +e+al+ d   +  +  +  + +a  +  +   A+
  KKY23482.1  83 LEQKEFRRARSIFERALDVD---STSVTLWIRYVEAEMKTRNINHAR 126
                 799***************99...656666666666666555555555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.8
      TPR_16   9 ragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyra 59 
                 + ++   A+++l++a+      P+    ++ +  +   +g+ ++ +a++++
  KKY23482.1 118 KTRNINHARNLLDRAVTIL---PRVDKLWYKYVYMEEMLGNIQGTRAVFER 165
                 5667777999999999888...88888888888888888877776666665 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0038
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllll 40 
                 a++ +++++yd+A+a+++ al+r    P+ +  +l++
  KKY23482.1 250 AKYEAKLKEYDRARAVYKFALDRL---PRSRSVALHK 283
                 6788999****************9...7766666555 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0059
      TPR_16  23 alkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 + ++ ++ P +++ ++ ++++    g++++ +++y++a+++ p
  KKY23482.1 310 YAESVKENPKNYDLWFDYARLEESGGDVDRIRDVYERAIAEIP 352
                 44555555**********************9999999997655 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 1
      TPR_16   8 lragdyddAaaaleaalkrdpssPd....aaeAllllgdaalrqgrlaeAa.aly 57 
                 ++++d ++A+  +++ lk+    P      a  +l +++   rq  l++A+  l 
  KKY23482.1 376 MENRDVERARQIYQECLKLI---PHrkftFAKVWLMKAQFEIRQLQLQAARkTLG 427
                 67788888888888777766...55555555556666666665556666654444 PP

  == domain 6  score: 1.1 bits;  conditional E-value: 0.68
      TPR_16  31 PdaaeAllllgdaalrqgrlaeAaalyra 59 
                 P + +A+ + +++   + ++++A+a y+ 
  KKY23482.1 467 PSNTQAWVEFAELERGLEDFERARAIYEL 495
                 77778888888888888888888888775 PP

  == domain 7  score: 13.2 bits;  conditional E-value: 0.00011
      TPR_16  11 gdyddAaaaleaalkrdpssPdaaeAllllgd 42 
                 g+yd+A+a++e++lk+     d++  + ++++
  KKY23482.1 520 GNYDRARALYERLLKKT----DHVKVWVNYAR 547
                 9***************9....68888888776 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0012       1.1       4      32 ..      75     103 ..      73     105 .. 0.91
   2 ?    2.0   0.0       0.3   2.9e+02      11      32 ..     116     137 ..     114     139 .. 0.88
   3 ?    4.7   0.7     0.041        39       6      30 ..     248     272 ..     244     276 .. 0.79
   4 ?   -1.5   0.0         4   3.8e+03       4      30 ..     324     350 ..     322     353 .. 0.63
   5 !    7.5   0.0    0.0053         5      12      33 ..     376     397 ..     373     398 .. 0.90
   6 ?    2.4   0.0      0.23   2.1e+02       1      33 [.     403     435 ..     403     436 .. 0.90
   7 ?   -2.3   0.0       7.1   6.7e+03      14      34 .]     449     469 ..     447     469 .. 0.81
   8 ?    0.9   0.1      0.67   6.3e+02       9      25 ..     478     494 ..     471     497 .. 0.65
   9 !   10.6   0.5   0.00053       0.5      13      30 ..     518     535 ..     516     538 .. 0.90
  10 ?   -2.1   0.1         6   5.7e+03      18      31 ..     573     586 ..     572     588 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0012
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldP 32 
                 +++ ++  ++++++ +A+  fe+Al  d 
  KKY23482.1  75 WMRYAQWELEQKEFRRARSIFERALDVDS 103
                 89999********************9875 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.3
       TPR_2  11 yyklgdyeeAleafekAleldP 32 
                  +k  + + A++++++A+ + P
  KKY23482.1 116 EMKTRNINHARNLLDRAVTILP 137
                 689999************9988 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.041
       TPR_2   6 nlGlayyklgdyeeAleafekAlel 30 
                 + ++  +kl++y++A++ ++ Al  
  KKY23482.1 248 AYAKYEAKLKEYDRARAVYKFALDR 272
                 6788889***********9866665 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 4
       TPR_2   4 lynlGlayyklgdyeeAleafekAlel 30 
                 ++  +++ +  gd ++ ++ +e+A++ 
  KKY23482.1 324 WFDYARLEESGGDVDRIRDVYERAIAE 350
                 555555555555555557889999986 PP

  == domain 5  score: 7.5 bits;  conditional E-value: 0.0053
       TPR_2  12 yklgdyeeAleafekAleldPn 33 
                 +++ d e+A++ ++++l+l P+
  KKY23482.1 376 MENRDVERARQIYQECLKLIPH 397
                 678999*************996 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.23
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a+++ + ++  +++ +++ A++ + +A+  +P+
  KKY23482.1 403 AKVWLMKAQFEIRQLQLQAARKTLGQAIGMCPK 435
                 68999999999****************988887 PP

  == domain 7  score: -2.3 bits;  conditional E-value: 7.1
       TPR_2  14 lgdyeeAleafekAleldPnn 34 
                 l ++ +++ +fek le +P n
  KKY23482.1 449 LFEFVRCRTLFEKQLEWNPSN 469
                 5677889999*9999999976 PP

  == domain 8  score: 0.9 bits;  conditional E-value: 0.67
       TPR_2   9 layyklgdyeeAleafe 25 
                 ++ + l d+e+A++ +e
  KKY23482.1 478 ELERGLEDFERARAIYE 494
                 55566677777777665 PP

  == domain 9  score: 10.6 bits;  conditional E-value: 0.00053
       TPR_2  13 klgdyeeAleafekAlel 30 
                 + g+y++A++++e+ l+ 
  KKY23482.1 518 YEGNYDRARALYERLLKK 535
                 78**************96 PP

  == domain 10  score: -2.1 bits;  conditional E-value: 6
       TPR_2  18 eeAleafekAleld 31 
                 ++A++ f +A +l+
  KKY23482.1 573 ARARAIFVRAHKLY 586
                 57999999999997 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.11     1e+02       6      32 ..      77     103 ..      73     105 .. 0.80
   2 ?   -2.4   0.0       8.5     8e+03       4      30 ..     109     135 ..     107     135 .. 0.79
   3 ?    1.5   0.6      0.49   4.6e+02      12      25 ..     254     267 ..     244     272 .. 0.79
   4 ?    0.8   0.0      0.83   7.8e+02       2      28 ..     322     348 ..     321     352 .. 0.91
   5 ?    6.4   0.0     0.013        12      14      32 ..     378     396 ..     371     398 .. 0.88
   6 ?    5.7   0.0     0.021        20       1      34 []     403     436 ..     403     436 .. 0.95
   7 ?   -0.1   0.0       1.5   1.4e+03      23      34 .]     458     469 ..     454     469 .. 0.85
   8 ?    5.5   0.0     0.025        24       2      26 ..     471     495 ..     470     498 .. 0.90
   9 ?    3.4   0.2      0.12   1.1e+02      14      29 ..     519     534 ..     516     534 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.11
                 HHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldp 32 
                 + ++  l+++++  A + +e+al+ d 
  KKY23482.1  77 RYAQWELEQKEFRRARSIFERALDVDS 103
                 5555567889999**********9986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 8.5
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekalel 30 
                 + +   + +k+ +++ A   + +a+++
  KKY23482.1 109 WIRYVEAEMKTRNINHARNLLDRAVTI 135
                 556666778999999999999999976 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.49
                 HHTT-HHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyye 25 
                  kl++y+ A ++y+
  KKY23482.1 254 AKLKEYDRARAVYK 267
                 79**********98 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.83
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 ++++  +++ ++ gd +    +ye+a+
  KKY23482.1 322 DLWFDYARLEESGGDVDRIRDVYERAI 348
                 789**********************98 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.013
                 TT-HHHHHHHHHHHHHHHH CS
       TPR_8  14 lgdyeeAkeyyekaleldp 32 
                   d e A + y+++l+l p
  KKY23482.1 378 NRDVERARQIYQECLKLIP 396
                 6789************988 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.021
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 a++++++++  + + ++++A +++ +a+ + p++
  KKY23482.1 403 AKVWLMKAQFEIRQLQLQAARKTLGQAIGMCPKD 436
                 789***************************9986 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 1.5
                 HHHHHHHHHHH. CS
       TPR_8  23 yyekaleldpdn 34 
                  +ek le++p+n
  KKY23482.1 458 LFEKQLEWNPSN 469
                 69********86 PP

  == domain 8  score: 5.5 bits;  conditional E-value: 0.025
                 CHHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyek 26 
                 +a++  + + + l+d+e A + ye 
  KKY23482.1 471 QAWVEFAELERGLEDFERARAIYEL 495
                 799999*****************96 PP

  == domain 9  score: 3.4 bits;  conditional E-value: 0.12
                 TT-HHHHHHHHHHHHH CS
       TPR_8  14 lgdyeeAkeyyekale 29 
                  g+y+ A + ye+ l+
  KKY23482.1 519 EGNYDRARALYERLLK 534
                 69**********9986 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.022        21       4      28 ..      76     100 ..      74     105 .. 0.88
   2 ?    2.9   0.0      0.22   2.1e+02      10      27 ..     179     200 ..     174     205 .. 0.76
   3 ?    4.2   0.5     0.082        77      11      33 .]     252     276 ..     247     276 .. 0.76
   4 ?    4.8   0.0     0.056        53       4      29 ..     325     350 ..     322     353 .. 0.88
   5 ?    4.6   0.0     0.063        60      13      28 ..     378     393 ..     369     396 .. 0.78
   6 ?    0.5   0.1       1.3   1.2e+03       5      27 ..     406     430 ..     403     435 .. 0.75
   7 ?    0.2   0.1       1.5   1.5e+03       7      24 ..     477     494 ..     471     495 .. 0.74
   8 !   10.3   0.1   0.00094      0.88      13      29 ..     519     535 ..     508     535 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.022
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealerlik 28 
                 ++ a+  +++++ ++A+ ++er ++
  KKY23482.1  76 MRYAQWELEQKEFRRARSIFERALD 100
                 5789999999************986 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.22
                 HHHH....HHHHHHHHHHHHHH CS
       TPR_6  10 yrkl....gdtdkAlealerli 27 
                 y+k+    ++ d+A+ ++er+ 
  KKY23482.1 179 YIKMekryNEFDNARSIFERFT 200
                 44655666899*********96 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.082
                 HHH..HHHHHHHHHHHHHHHH-TT- CS
       TPR_6  11 rkl..gdtdkAlealerlikeYPdS 33 
                 +++  +++d+A++ ++  +++ P S
  KKY23482.1 252 YEAklKEYDRARAVYKFALDRLPRS 276
                 433349*********9999998876 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.056
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealerlike 29 
                 +  a++ +++gd d+ ++ +er i e
  KKY23482.1 325 FDYARLEESGGDVDRIRDVYERAIAE 350
                 66799999999***********9975 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.063
                 HHHHHHHHHHHHHHHH CS
       TPR_6  13 lgdtdkAlealerlik 28 
                   d ++A++++++++k
  KKY23482.1 378 NRDVERARQIYQECLK 393
                 3599*********987 PP

  == domain 6  score: 0.5 bits;  conditional E-value: 1.3
                 HHHHHHHH.HH.HHHHHHHHHHHHH CS
       TPR_6   5 klalsyrk.lg.dtdkAlealerli 27 
                 +l +++++  + + ++A+++l + i
  KKY23482.1 406 WLMKAQFEiRQlQLQAARKTLGQAI 430
                 566666665555999*****99977 PP

  == domain 7  score: 0.2 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAleale 24 
                 a++ r l d ++A++++e
  KKY23482.1 477 AELERGLEDFERARAIYE 494
                 55555557999****997 PP

  == domain 8  score: 10.3 bits;  conditional E-value: 0.00094
                 HHHHHHHHHHHHHHHHH CS
       TPR_6  13 lgdtdkAlealerlike 29 
                  g++d+A++++erl+k+
  KKY23482.1 519 EGNYDRARALYERLLKK 535
                 57************996 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   2.7    0.0008      0.75     149     248 ..      75     174 ..      47     195 .. 0.64
   2 ?    2.7   0.1     0.064        61     111     171 ..     141     198 ..     137     211 .. 0.84
   3 !    5.9   0.1    0.0066       6.2     145     182 ..     242     279 ..     233     291 .. 0.91
   4 !    7.2   0.2    0.0028       2.6      98     188 ..     309     406 ..     304     417 .. 0.76
   5 ?    2.7   0.1     0.064        60     110     176 ..     470     536 ..     463     545 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0008
      TPR_15 149 llaraelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkaraesdasLwgplaaAlllLgrpkkALeylrkqakenrkd 247
                 ++++a++++++ +  +A  ++++Al+++ +s +l  +++ +   + + + +r+ll +      +  +Lw  +     +Lg+ +   + +++ ++ ++++
  KKY23482.1  75 WMRYAQWELEQKEFRRARSIFERALDVDSTSVTLWIRYVEAEMKTRNINHARNLLDRAVTILPRVDKLWYKYVYMEEMLGNIQGTRAVFERWMSWEPDE 173
                 777777777777777777777777777777777777776666666666666666665555555666666555555555555444444444444444444 PP

      TPR_15 248 p 248
                 +
  KKY23482.1 174 A 174
                 4 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.064
      TPR_15 111 rlLssalellerakdydriaellksleeeeaaeqsaafllaraelyrqegqtdaAlrdyre 171
                 +l+++++++ e +++++ +++++++       e ++a ++a+++++++ ++ d+A  ++++
  KKY23482.1 141 KLWYKYVYMEEMLGNIQGTRAVFERW---MSWEPDEAAWSAYIKMEKRYNEFDNARSIFER 198
                 57888888888888888888888884...457889********************999886 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0066
      TPR_15 145 saafllaraelyrqegqtdaAlrdyreAlalapdssel 182
                 ++ +++a+a+++ +  + d+A  +y+ Al++ p s ++
  KKY23482.1 242 DEKIFIAYAKYEAKLKEYDRARAVYKFALDRLPRSRSV 279
                 678899**************************998876 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0028
      TPR_15  98 rlaekgwrrfrsprlLssalellerakdydriaellksle.......eeeaaeqsaafllaraelyrqegqt.daAlrdyreAlalapdsselraallW 188
                 ++ae+  +  ++ +l+  +  l e  +d+dri+++ +++        e+   ++  + ++ +a +++ e++  ++A ++y+e l+l p   ++  a +W
  KKY23482.1 309 QYAESVKENPKNYDLWFDYARLEESGGDVDRIRDVYERAIaeippsqEKRHWRRYIYLWIFYALWEEMENRDvERARQIYQECLKLIPH-RKFTFAKVW 406
                 566666666778889999999999999*****9999994433554323333889999*********999976378***********998.555555555 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.064
      TPR_15 110 prlLssalellerakdydriaellksleeeeaaeqsaafllaraelyrqegqtdaAlrdyreAlala 176
                 ++ + +  el   ++d++r +++ +    ++++   ++ +  ++ +++ eg+ d+A  +y++ l++ 
  KKY23482.1 470 TQAWVEFAELERGLEDFERARAIYELGVDQPDLDMPELLWKSYIDFEEYEGNYDRARALYERLLKKT 536
                 5666777777777777777777777666788888888889999999999999999999998887765 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.016        15       4      60 ..      81     137 ..      79     142 .. 0.90
   2 ?   -3.1   0.0       9.8   9.2e+03      10      27 ..     188     205 ..     185     209 .. 0.58
   3 ?    1.9   0.0      0.26   2.5e+02      25      58 ..     317     350 ..     303     361 .. 0.77
   4 ?    5.3   0.0     0.023        22       7      62 ..     377     436 ..     375     439 .. 0.87
   5 ?    3.6   0.0     0.077        73      19      50 ..     460     491 ..     448     499 .. 0.85
   6 ?   -1.7   0.0       3.6   3.4e+03      10      21 ..     521     532 ..     513     534 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.016
       TPR_9   4 iaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 + ++++++ ra  + er l +++ ++ ++     ++++  +++ A++ L++++ + p
  KKY23482.1  81 WELEQKEFRRARSIFERALDVDSTSVTLWIRYVEAEMKTRNINHARNLLDRAVTILP 137
                 5578999************************99999999999999999999987666 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9.8
       TPR_9  10 dweralavverllllaPd 27 
                 +++ a  + er  +++P+
  KKY23482.1 188 EFDNARSIFERFTIVHPE 205
                 455566666666666665 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.26
       TPR_9  25 aPddpeerrdRGlllaqlGclsaAladLeaylal 58 
                 +P+  ++++d ++l++  G++   ++  e+++a 
  KKY23482.1 317 NPKNYDLWFDYARLEESGGDVDRIRDVYERAIAE 350
                 6899999*****9999999988777777777755 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.023
       TPR_9   7 reedweralavverllllaPdd....peerrdRGlllaqlGclsaAladLeaylalapda 62 
                 +++d era ++++  l l P++    +  ++  ++ + ++ +l+aA++ L +++ ++p++
  KKY23482.1 377 ENRDVERARQIYQECLKLIPHRkftfAKVWLMKAQFEIRQLQLQAARKTLGQAIGMCPKD 436
                 678999999999999999777666668999999*************************87 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.077
       TPR_9  19 erllllaPddpeerrdRGlllaqlGclsaAla 50 
                 e  l ++P   + + + + l+  l++++ A+a
  KKY23482.1 460 EKQLEWNPSNTQAWVEFAELERGLEDFERARA 491
                 55689************************997 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 3.6
       TPR_9  10 dweralavverl 21 
                 +++ra a +erl
  KKY23482.1 521 NYDRARALYERL 532
                 445555555555 PP

>> U3_assoc_6  U3 small nucleolar RNA-associated protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   2.2   5.7e-05     0.054      27      63 ..      56      92 ..      48      94 .. 0.95
   2 ?    4.5   0.2     0.038        36      23      63 ..      86     126 ..      84     128 .. 0.86
   3 ?   -2.9   0.0         8   7.6e+03      41      54 ..     171     184 ..     137     193 .. 0.70
   4 ?    3.7   0.2     0.069        65      45      64 ..     245     264 ..     238     283 .. 0.87
   5 ?   -2.4   0.1       5.3     5e+03      25      53 ..     303     331 ..     301     364 .. 0.67
   6 ?    1.3   0.0      0.38   3.6e+02      45      63 ..     438     456 ..     433     458 .. 0.85
   7 !    7.2   0.0    0.0055       5.2      24      63 ..     451     490 ..     445     494 .. 0.90
   8 ?    1.1   0.1      0.45   4.3e+02      34      56 ..     530     552 ..     506     555 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.7e-05
  U3_assoc_6 27 kkrrkfEyklqrrgkkkedflkYieyElnLeklrkkR 63
                +kr++fE  + r + + +++++Y+++El+ ++ r+ R
  KKY23482.1 56 RKRKEFEDYVRRNRINMNNWMRYAQWELEQKEFRRAR 92
                79********************************998 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.038
  U3_assoc_6  23 keIvkkrrkfEyklqrrgkkkedflkYieyElnLeklrkkR 63 
                 ke  + r+ fE +l   + +   +++Y+e E++  ++ + R
  KKY23482.1  86 KEFRRARSIFERALDVDSTSVTLWIRYVEAEMKTRNINHAR 126
                 666788999***********************988776665 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 8
  U3_assoc_6  41 kkkedflkYieyEl 54 
                 +  + + +Yi++E 
  KKY23482.1 171 PDEAAWSAYIKMEK 184
                 45566777888876 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.069
  U3_assoc_6  45 dflkYieyElnLeklrkkRr 64 
                  f++Y++yE +L++  + R 
  KKY23482.1 245 IFIAYAKYEAKLKEYDRARA 264
                 59**********99887775 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 5.3
  U3_assoc_6  25 IvkkrrkfEyklqrrgkkkedflkYieyE 53 
                 I+k+r ++  +++  +k+ + +  Y++ E
  KKY23482.1 303 IAKRRVQYAESVKENPKNYDLWFDYARLE 331
                 66677777777777777777666666665 PP

  == domain 6  score: 1.3 bits;  conditional E-value: 0.38
  U3_assoc_6  45 dflkYieyElnLeklrkkR 63 
                  f  Yie E +L + ++ R
  KKY23482.1 438 LFKGYIELEKQLFEFVRCR 456
                 5899**********99988 PP

  == domain 7  score: 7.2 bits;  conditional E-value: 0.0055
  U3_assoc_6  24 eIvkkrrkfEyklqrrgkkkedflkYieyElnLeklrkkR 63 
                 e v+ r+ fE +l+  +++ + +++++e E  Le+  + R
  KKY23482.1 451 EFVRCRTLFEKQLEWNPSNTQAWVEFAELERGLEDFERAR 490
                 67899*****************************998887 PP

  == domain 8  score: 1.1 bits;  conditional E-value: 0.45
  U3_assoc_6  34 yklqrrgkkkedflkYieyElnL 56 
                  +l +++ + + +++Y+++E+n+
  KKY23482.1 530 ERLLKKTDHVKVWVNYARFEINV 552
                 57778888888899999999986 PP

>> ECSIT  Evolutionarily conserved signalling intermediate in Toll pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00014      0.13      58     108 ..     358     409 ..     306     434 .. 0.74
   2 ?   -0.3   0.0      0.52   4.9e+02      36      82 ..     568     613 ..     542     620 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
       ECSIT  58 svrrrghveFiyaAl.kkmeefgverDlevYkalldvfPkevfiprnllqae 108
                    rr    +i+ Al ++me+ +ver  ++Y++ l+++P  +f+  +++  +
  KKY23482.1 358 RHWRRYIYLWIFYALwEEMENRDVERARQIYQECLKLIPHRKFTFAKVWLMK 409
                 223344444566676478*************************998876544 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.52
       ECSIT  36 kaagekkdkatfleavevfekrsvrrrghveFiyaAlkkmeefgver 82 
                 + a +++ +a f++a + +++++ + +++v+ + a l   + +g  +
  KKY23482.1 568 SEAAKARARAIFVRAHKLYKSQK-SVQNRVDLLAAWLSFEQTHGSPE 613
                 23358899999999999999877.56677887776666555555555 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0065       6.1      24      81 ..      73     131 ..      61     132 .. 0.86
   2 ?    2.3   0.1      0.21     2e+02      53      80 ..     240     267 ..     224     290 .. 0.72
   3 ?   -0.7   0.1       1.9   1.8e+03      36      80 ..     378     427 ..     376     429 .. 0.77
   4 ?    0.3   0.0      0.86   8.1e+02      37      58 ..     520     541 ..     516     557 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0065
                 HHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  24 edayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 ++ + +A+  ++++++ rA  ++++a + +s+s   ++ + ++  k  +++ A+++L++
  KKY23482.1  73 NNWMRYAQWELEQKEFRRARSIFERAlDVDSTSVTLWIRYVEAEMKTRNINHARNLLDR 131
                 5566699**************************99999999999999999999999876 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.21
                 HC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  53 skslgcrylfAqcllkLkkyeeAiaaLe 80 
                   ++++ + +A+   kLk+y+ A+a+++
  KKY23482.1 240 FMDEKIFIAYAKYEAKLKEYDRARAVYK 267
                 4555666667777777777777777654 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.9
                 TT-HHHHHHHHHCT.SHHHC-H....HHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  36 ngqykrAyellrka.klnsksl....gcrylfAqcllkLkkyeeAiaaLe 80 
                 n + +rA ++++++ kl ++ +    ++++ +Aq  + + +++ A+++L+
  KKY23482.1 378 NRDVERARQIYQEClKLIPHRKftfaKVWLMKAQFEIRQLQLQAARKTLG 427
                 67888888898888777777777777888888888888888888888887 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.86
                 T-HHHHHHHHHCTSHHHC-HHH CS
      ANAPC3  37 gqykrAyellrkaklnskslgc 58 
                 g+y+rA  l++++ ++  + ++
  KKY23482.1 520 GNYDRARALYERLLKKTDHVKV 541
                 4555555555555444445455 PP

>> NRDE-2  NRDE-2, necessary for RNA interference
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   3.5    0.0088       8.3       4     109 ..      59     147 ..      25     159 .. 0.66
   2 ?    7.6   0.0    0.0019       1.8       2      28 ..     306     332 ..     305     352 .. 0.76
   3 ?    1.2   0.3      0.16   1.6e+02     100     141 ..     362     401 ..     336     424 .. 0.78
   4 ?    6.2   4.6    0.0052       4.9       6     132 ..     459     626 ..     455     643 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0088
      NRDE-2   4 aelnraveenPedidaWlelvefQdellsaeeeslskserkalaeiklsilekAleknksnpdserLllelLklgseiwdseklakeWeellkenpnsv 102
                 +e++  v++n  +++ W+++++           +     +k+   +  si+e+Al      ++s +L +++ ++ +++ + +  ++  ++++   p   
  KKY23482.1  59 KEFEDYVRRNRINMNNWMRYAQWEL--------E-----QKE-FRRARSIFERALDVD---STSVTLWIRYVEAEMKTRNINHARNLLDRAVTILPRVD 140
                 4555555555555555555554443........1.....111.222236777777766...66677777777777777777777777777777666666 PP

      NRDE-2 103 kLWreyl 109
                 kLW +y+
  KKY23482.1 141 KLWYKYV 147
                 7776665 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0019
      NRDE-2   2 knaelnraveenPedidaWlelvefQd 28 
                 + +++ + v+enP++ d+W++++++ +
  KKY23482.1 306 RRVQYAESVKENPKNYDLWFDYARLEE 332
                 56788999*************999887 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.16
      NRDE-2 100 nsvkLWreyldfrqsnfasfsvekvkelyekclrtlsakleg 141
                  ++ LW+ y  ++    ++  ve+ +++y++cl+ + +++ +
  KKY23482.1 362 RYIYLWIFYALWEEM--ENRDVERARQIYQECLKLIPHRKFT 401
                 456788888888755..8889************987776655 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0052
      NRDE-2   6 lnraveenPedidaWlelvefQdellsaeee......................slskserkalaeiklsilekAleknksnpdserLllelLklgseiw 82 
                 +++++e nP++++aW+e++e+   l + e+                        +  +e +  +++  +++e+ l+k+    d+ ++ +++ +   ++ 
  KKY23482.1 459 FEKQLEWNPSNTQAWVEFAELERGLEDFERAraiyelgvdqpdldmpellwksYIDFEEYEGNYDRARALYERLLKKT----DHVKVWVNYARFEINVP 553
                 7899******************98775444455555555566666666666642333344446666666666666666....34444444444444444 PP

      NRDE-2  83 dse.......................klakeWeellkenpnsvkLWreyldfrqsnfasfsvekvkelyekcl 132
                 d++                         a + ++  k+ +n v+L  ++l+f+q++ +   +ek+ +   +++
  KKY23482.1 554 DEAstveadedqpvseaakararaifVRAHKLYKSQKSVQNRVDLLAAWLSFEQTHGSPEDIEKIEKQTPRRV 626
                 4333444444566665555555555544444444444556666666666666666666666666666655555 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.3   2.2e+03      14      31 ..      85     102 ..      83     103 .. 0.88
   2 ?   -2.5   0.0       5.9   5.5e+03      11      32 ..     116     137 ..     115     139 .. 0.80
   3 ?   -1.0   0.0       2.1     2e+03      13      33 ..     185     205 ..     184     209 .. 0.83
   4 ?    6.5   0.3    0.0094       8.8       8      35 ..     248     277 ..     246     284 .. 0.75
   5 ?   -2.9   0.0         8   7.5e+03      18      32 ..     382     396 ..     379     397 .. 0.81
   6 ?    2.2   0.0       0.2   1.9e+02      14      37 ..     449     472 ..     448     474 .. 0.91
   7 ?    4.4   0.1     0.041        39      15      30 ..     520     535 ..     519     538 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.3
                 HT-HHHHHHHHHHHHHHT CS
  Fis1_TPR_C  14 lgeYseArryvdalLeiE 31 
                 ++e+++Ar   ++ L ++
  KKY23482.1  85 QKEFRRARSIFERALDVD 102
                 689*********999875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.9
                 HHHHT-HHHHHHHHHHHHHHTT CS
  Fis1_TPR_C  11 hyklgeYseArryvdalLeiEP 32 
                  +k ++ + Ar+++d+   i P
  KKY23482.1 116 EMKTRNINHARNLLDRAVTILP 137
                 578899999*****99877755 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 2.1
                 HHT-HHHHHHHHHHHHHHTTS CS
  Fis1_TPR_C  13 klgeYseArryvdalLeiEPe 33 
                 +  e+++Ar   +++  ++Pe
  KKY23482.1 185 RYNEFDNARSIFERFTIVHPE 205
                 6689********999888887 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0094
                 HHHHH..HHT-HHHHHHHHHHHHHHTTS-H CS
  Fis1_TPR_C   8 AlGhy..klgeYseArryvdalLeiEPenr 35 
                 A+++y  kl+eY++Ar   +  L   P+ r
  KKY23482.1 248 AYAKYeaKLKEYDRARAVYKFALDRLPRSR 277
                 5555444*********99988887766665 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 8
                 HHHHHHHHHHHHHTT CS
  Fis1_TPR_C  18 seArryvdalLeiEP 32 
                 ++Ar+  + +L++ P
  KKY23482.1 382 ERARQIYQECLKLIP 396
                 689999999999755 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.2
                 HT-HHHHHHHHHHHHHHTTS-HHH CS
  Fis1_TPR_C  14 lgeYseArryvdalLeiEPenrQa 37 
                 l e+ ++r + +  Le  P+n Qa
  KKY23482.1 449 LFEFVRCRTLFEKQLEWNPSNTQA 472
                 5688999****************9 PP

  == domain 7  score: 4.4 bits;  conditional E-value: 0.041
                 T-HHHHHHHHHHHHHH CS
  Fis1_TPR_C  15 geYseArryvdalLei 30 
                 g+Y++Ar + ++lL++
  KKY23482.1 520 GNYDRARALYERLLKK 535
                 8*************96 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.14   1.3e+02      13      33 ..      84     104 ..      83     105 .. 0.89
   2 ?    5.2   0.2     0.021        20      13      32 ..     255     274 ..     253     276 .. 0.90
   3 ?    3.1   0.0       0.1        95      14      33 ..     378     397 ..     375     398 .. 0.86
   4 ?   -1.1   0.0       2.1     2e+03       1      34 []     403     436 ..     403     436 .. 0.86
   5 ?   -1.3   0.1       2.5   2.3e+03      20      30 ..     482     492 ..     478     494 .. 0.70
   6 ?    2.8   0.5      0.13   1.2e+02      14      28 ..     519     533 ..     517     535 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.14
                 HTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  13 klgkydeAleyyekALelnPn 33 
                 +++++  A   +e+AL ++ +
  KKY23482.1  84 EQKEFRRARSIFERALDVDST 104
                 6999*************9975 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.021
                 HTT-HHHHHHHHHHHHHHST CS
       TPR_1  13 klgkydeAleyyekALelnP 32 
                 kl++yd A + y+ AL   P
  KKY23482.1 255 KLKEYDRARAVYKFALDRLP 274
                 89**************9877 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.1
                 TT-HHHHHHHHHHHHHHSTT CS
       TPR_1  14 lgkydeAleyyekALelnPn 33 
                 + + + A + y+++L+l P+
  KKY23482.1 378 NRDVERARQIYQECLKLIPH 397
                 5678999**********996 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 ak++  +++   ++ +++ A +   +A+  +P++
  KKY23482.1 403 AKVWLMKAQFEIRQLQLQAARKTLGQAIGMCPKD 436
                 6788888888889999999*99999999999975 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 2.5
                 HHHHHHHHHHH CS
       TPR_1  20 AleyyekALel 30 
                  le++e+A  +
  KKY23482.1 482 GLEDFERARAI 492
                 58999999665 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.13
                 TT-HHHHHHHHHHHH CS
       TPR_1  14 lgkydeAleyyekAL 28 
                  g+yd A + ye+ L
  KKY23482.1 519 EGNYDRARALYERLL 533
                 69**********966 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       7.2   6.8e+03      63      75 ..      21      33 ..      19      34 .. 0.78
   2 ?    7.8   0.1    0.0043         4       8      33 ..      77     102 ..      71     138 .. 0.62
   3 ?    2.8   0.1      0.16   1.5e+02       9      32 ..     249     272 ..     242     277 .. 0.73
   4 ?   -1.7   0.0       3.8   3.6e+03      49      73 ..     325     349 ..     310     349 .. 0.79
   5 ?    0.3   0.0      0.95     9e+02      62      74 ..     382     394 ..     369     397 .. 0.68
   6 ?    2.4   0.0       0.2   1.9e+02       8      27 ..     475     494 ..     469     501 .. 0.60
   7 ?    5.5   0.1     0.022        21      13      30 ..     516     533 ..     506     536 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 7.2
      TPR_12 63 eAlelleealaia 75
                 A++ll+ea+++ 
  KKY23482.1 21 SAEQLLREAVDRQ 33
                5899999998875 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0043
      TPR_12   8 nlaavlrrlgrydeAlellekaleia 33 
                 ++a+ +++++++  A++++e+al++ 
  KKY23482.1  77 RYAQWELEQKEFRRARSIFERALDVD 102
                 55666666666666666666666655 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.16
      TPR_12   9 laavlrrlgrydeAlellekalei 32 
                 +a  +++l++yd A++ ++ al++
  KKY23482.1 249 YAKYEAKLKEYDRARAVYKFALDR 272
                 566677788888888888888765 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 3.8
      TPR_12  49 rnLgrlyralgryeeAlelleeala 73 
                 ++++rl +  g+ +  ++ +e+a+a
  KKY23482.1 325 FDYARLEESGGDVDRIRDVYERAIA 349
                 6778888888888888888998875 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.95
      TPR_12  62 eeAlelleealai 74 
                 e A+++++e+l++
  KKY23482.1 382 ERARQIYQECLKL 394
                 5566666666654 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.2
      TPR_12   8 nlaavlrrlgrydeAlelle 27 
                 + a+++r l++++ A++++e
  KKY23482.1 475 EFAELERGLEDFERARAIYE 494
                 45555555555555555554 PP

  == domain 7  score: 5.5 bits;  conditional E-value: 0.022
      TPR_12  13 lrrlgrydeAlellekal 30 
                 + + g+yd A++l+e+ l
  KKY23482.1 516 EEYEGNYDRARALYERLL 533
                 566788888888888776 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       8.2   7.7e+03      14      27 ..      43      54 ..      41      60 .. 0.66
   2 ?    3.7   0.0     0.081        77      12      31 ..      85     102 ..      81     107 .. 0.81
   3 ?   -2.3   0.0       6.8   6.4e+03      13      24 ..     187     198 ..     187     198 .. 0.91
   4 ?   -0.6   0.2       1.9   1.8e+03      12      27 ..     256     272 ..     249     280 .. 0.74
   5 ?    0.9   0.0      0.63     6e+02      13      32 ..     335     352 ..     328     358 .. 0.75
   6 ?   -0.8   0.0       2.2     2e+03      13      28 ..     379     394 ..     373     398 .. 0.84
   7 ?    1.0   0.0      0.56   5.3e+02      12      33 ..     483     502 ..     479     505 .. 0.79
   8 ?    8.6   0.1    0.0022         2      12      30 ..     519     535 ..     515     541 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 8.2
       TPR_7 14 dyeeAielyeqsLa 27
                ++++++el+e   +
  KKY23482.1 43 RFADLEELHEY--Q 54
                67777888876..4 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.081
       TPR_7  12 lGdyeeAielyeqsLaltkd 31 
                 + ++++A +++e+  al+ d
  KKY23482.1  85 QKEFRRARSIFER--ALDVD 102
                 5689*********..77766 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 6.8
       TPR_7  13 GdyeeAielyeq 24 
                 +++++A +++e+
  KKY23482.1 187 NEFDNARSIFER 198
                 699*******98 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.9
       TPR_7  12 lGdyeeAielyeqsL.a 27 
                 l +y++A  +y+ +L +
  KKY23482.1 256 LKEYDRARAVYKFALdR 272
                 669*******9974444 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.63
       TPR_7  13 GdyeeAielyeqsLaltkdp 32 
                 Gd ++  ++ye+  a+++ p
  KKY23482.1 335 GDVDRIRDVYER--AIAEIP 352
                 89999999****..666544 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 2.2
       TPR_7  13 GdyeeAielyeqsLal 28 
                 +d e+A ++y+++L l
  KKY23482.1 379 RDVERARQIYQECLKL 394
                 7899********8854 PP

  == domain 7  score: 1.0 bits;  conditional E-value: 0.56
       TPR_7  12 lGdyeeAielyeqsLaltkdpe 33 
                 l d+e+A  +ye   +++  ++
  KKY23482.1 483 LEDFERARAIYEL--GVDQPDL 502
                 78**********8..7766555 PP

  == domain 8  score: 8.6 bits;  conditional E-value: 0.0022
       TPR_7  12 lGdyeeAielyeqsLaltk 30 
                 +G+y++A  lye++L   k
  KKY23482.1 519 EGNYDRARALYERLL--KK 535
                 7************65..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.49
# Mc/sec: 4222.23
//
Query:       KKY23483.1  [L=613]
Description: putative pre-mrna splicing factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-71  240.4   0.0    2.6e-71  239.8   0.0    1.3  1  Nop       snoRNA binding domain, fibrillarin
    7.6e-48  162.4   0.9    2.1e-47  161.0   0.9    1.8  1  Prp31_C   Prp31 C terminal domain
  ------ inclusion threshold ------
       0.12   10.5   0.8       0.16   10.2   0.8    1.1  1  SBE2      SBE2, cell-wall formation


Domain annotation for each model (and alignments):
>> Nop  snoRNA binding domain, fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.8   0.0   4.3e-75   2.6e-71       2     230 .]     146     386 ..     145     386 .. 0.91

  Alignments for each domain:
  == domain 1  score: 239.8 bits;  conditional E-value: 4.3e-75
                 HHHHHHHHHHHHHHHHHHHTTTSTCHHHHS-SHHHHHHHHHHCCC....CHCCT.HHTT........HH.HHHHHHHHHHCHHHH-SSS-S-HHHHHHH CS
         Nop   2 ldeidkeintlhkrvrewYswhFpELeslvkdnleYakvvklign....eredlekkee.......dee.lakevimaakvtastsmgaelseedlkni 88 
                 +++id ei  +hk++r++Ys +FpELe+lv ++l+Yak+v++++n    + ++++++++       + + l+  ++m+++v+ +t++g+e+se++lk++
  KKY23483.1 146 STSIDGEITLVHKFIRDHYSIRFPELETLVGNPLDYAKAVAILKNgpldKIQSIASSSDnmvgvplR-SiLEGPTLMVVTVEGTTTKGREMSESELKTV 243
                 679*****************************************96555333333332357788543.26***************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHSSHHHHHCS-HHHHTTTT-HHHHCCCHHT-.--SSSCHHHCSHHHHHTS-C CS
         Nop  89 kelcdrvleleelrkelleYlesrmsaiAPNlsaLvGeevaarLishaGgLtnLakmPastiqilGaekalfralkkk.ntpkyGliyhselvqkatpp 186
                 + +c+++lele++++ l eY++srm+++APNl+aL+G+ +aa+L++ aGg+t Lak+Pa++i ilG ++++++  +++   +++G++yhs+++q ++p+
  KKY23483.1 244 LGACKMTLELEKAKRILIEYVQSRMNVFAPNLTALIGSLTAAQLLNYAGGVTGLAKTPACNIPILGTKRQTQTGFATNvGIRQQGFLYHSPIIQ-EIPN 341
                 *********************************************************************88888885558**************.88** PP

                 CCHHHHHHHHHHHHHHHHHHH.HTT----SHHHHHHHHHHHHHHH CS
         Nop 187 klkkkiaRllaaKvalaaRiD.afsekdgslGkklreeiekklkk 230
                 +lk++++R+++aK++laaR+D   +++dgs+G++lre+  ++l+k
  KKY23483.1 342 DLKRQAMRIVSAKLVLAARVDrVHQSPDGSTGEDLREQTIQRLEK 386
                 *********************6445566**************986 PP

>> Prp31_C  Prp31 C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.0   0.9   3.5e-51   2.1e-47       2     120 .]     394     545 ..     393     545 .. 0.92

  Alignments for each domain:
  == domain 1  score: 161.0 bits;  conditional E-value: 3.5e-51
     Prp31_C   2 kekkaLpaPddkpkkkRGGrraRkaKerlamtelrkaqNRmaFGkeeeevgq..gdetgkglGmlgkkasgriraaqvdkktkaklskkl......... 89 
                 ++ +aLpaPddkp++kRGGrraRkaKe++amt+lrk+qNR+aFG+ee++vg+  g++t +glGm+g++++grira q+d++t+aklskk+         
  KKY23483.1 394 RGPRALPAPDDKPSRKRGGRRARKAKEAVAMTDLRKQQNRVAFGQEEKDVGYgtGEGT-VGLGMIGQENQGRIRAEQIDQRTRAKLSKKNpgwgnasla 491
                 689*************************************************544444.8**********************************99999 PP

     Prp31_C  90 .....................kkklqrssgvg..sgtasslaftpvqglelvnP 120
                                      ++++ r+sgvg  +gtass+aftpvqglelv+P
  KKY23483.1 492 agtasslrgfgsgipgsatalRASGLRTSGVGagAGTASSIAFTPVQGLELVDP 545
                 9999999999999999988887777777744466*******************9 PP

>> SBE2  SBE2, cell-wall formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.8   2.7e-05      0.16     125     259 ..      13     149 ..       1     169 [. 0.83

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 2.7e-05
        SBE2 125 ddtqssassaetdeedeeeGidkdldnlstnpsilsekaeesradgdsvsireksnnsvsestkdGsksalsksisvndtsaeksmnkarksyqeqfss 223
                 +d+ s+ + +++d+ d+ +G  ++++  st    l+e  ++     + v  r + + +  e+ ++ +++a+ + + + d+   +s+ + +k+ ++ + +
  KKY23483.1  13 EDSGSEGADVQEDSFDNVNGEGHQQSSESTAKNGLAEDDNDLSDAEEEVEARRAAQMDLDEADDEEDRKAKVEKMKFRDVGDVRSVARLMKQLEPVLEN 111
                 78888889999*********9999999999999999998888777788999************************************************ PP

        SBE2 224 kksqssllnlrqrsr..aksdkrsstlynlsnstsaiv 259
                      s+++ ++ ++  + +d+   +l   sn+ s+ +
  KKY23483.1 112 ISHFQSIPPEKRTTNigSIEDNPEYKLLTESNALSTSI 149
                 *********99887722344555677777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4498.60
//
Query:       KKY23484.1  [L=374]
Description: putative alpha-ketoglutarate-dependent taurine dioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-58  199.2   0.3    1.4e-58  198.8   0.3    1.1  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.8   0.3   7.9e-63   1.4e-58       2     268 .]      86     351 ..      85     351 .. 0.94

  Alignments for each domain:
  == domain 1  score: 198.8 bits;  conditional E-value: 7.9e-63
        TauD   2 vkpltpkfgae..gvdlsdleslddelkeelrellaeygvvvfrgfplspeqqlefarrfGplygtpgrgtntkygevld.vssvyesadianlayttl 97 
                 v  lt+++g+e  g++l d   l++++k+el  l+ae+ vv+fr++++sp+qq+++ ++ G+++ +p+ ++ +   +v +   + ++++ +a   +++ 
  KKY23484.1  86 VNNLTSHIGTEivGLQLKD---LTSQQKDELALLIAERSVVFFRDQDISPQQQKALGEYYGEVEVHPQVAQVPGVSGVTViWPALQATERAASFRNPGG 181
                 7789*******99999999...89999*****************************************************8455555666666555555 PP

        TauD  98 l..wHtDlsylesppgiqlLhcleapatGGetpfvDgraaynaLpeelpellegltavrvyyhyrggglrteqelpavdkhprtghpvvrthpvltgrk 194
                    wHtDl ++ +p+gi++Lh  ++p+ GG+t++++g++ay++L+++ ++ ++g  av++ +h +      + +++a+ k+ +++hp+vr+hp  tg+k
  KKY23484.1 182 AsrWHTDLVHERQPAGITHLHNDVVPPIGGDTLWASGYSAYEKLSPDFRSIIDGKYAVYRSAHPYL----DKDHPEAGPKFVERIHPLVRVHPA-TGWK 275
                 577*************************************************************99....999********************6.**** PP

        TauD 195 allvnppfatrieglgtpeskelldaleelledp.eftyrfqwqeGdlvifdNrrvlHgrt.afdegeeRhllrcy 268
                 al vn+++++ri+gl+++es+ ll +l++++e++ ++++rf+w +   +++dNr + H ++ +++  ++Rh  r++
  KKY23484.1 276 ALWVNRAMTDRIVGLDKAESDLLLGYLFDVYEKNvDIQVRFKWTPRTSALWDNRITIHNASwDYEGSHPRHGTRVT 351
                 *********************************99*****************************77799**99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.59s 00:00:01.12 Elapsed: 00:00:00.58
# Mc/sec: 1951.80
//
Query:       KKY23485.1  [L=404]
Description: putative aldose 1-epimerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-52  177.9   0.0    5.1e-52  177.0   0.0    1.3  1  Aldose_epim  Aldose 1-epimerase
  ------ inclusion threshold ------
      0.012   16.1   0.1        8.5    7.0   0.0    2.9  2  DUF4369      Domain of unknown function (DUF4369)


Domain annotation for each model (and alignments):
>> Aldose_epim  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.0   0.0   5.7e-56   5.1e-52       2     284 ..      31     379 ..      30     382 .. 0.89

  Alignments for each domain:
  == domain 1  score: 177.0 bits;  conditional E-value: 5.7e-56
                  EEEEEETTEEEEEECTCTTEEEEEEETT.S..TEESB-B-STHHHHHHSC.....CSSCEECSS-SEEETTEEEETTEEEECCCCBT.TTCEETBSGG CS
  Aldose_epim   2 litlkngaglsakislyGAtllslkvpdke..qrevllgsddaeeylkds.....yfgatlgrvanRianGeFeldGkpyqlpqnee.gknplHGgar 91 
                  ++tl+ + + +ak++ yGA l+sl vpd++  +++v+lg+d+ ++y  d+     yfg+++gr+anRi+nG+F+l+G++y++p ne+ gkn+lHGg  
   KKY23485.1  31 VYTLTAD-NITAKFIPYGARLTSLLVPDRDgnEQDVVLGYDNSSQYPIDTvtnhtYFGPVVGRFANRIKNGTFTLNGQTYHIPENENgGKNTLHGGTI 127
                  699***8.6*********************************8888766666668******************************************* PP

                  G...SB-EEEEEEETTEEEEEEEEEEETC.HCSTSEEEEEEEEEEETTEE........EEEEEEEEESS..S-EEEEEEEEEEEETSSC....TCTGG CS
  Aldose_epim  92 g...reWeveevkeddgvtvslvlkpdge.egypgdlevrvtytLnedne........lkieyeatndg..kptpfnltnHtYFnlsge....sidsh 171
                  g   r+W+v+  +   +++++++l  d+  eg+pg++    tytL++++          +++ +  +     +tp+  +nH Y+nl+g      ++++
   KKY23485.1 128 GydqRNWTVTAYT---NTSITFTL-LDTAfEGFPGTVLNHATYTLSSETLgspwgiphPRLTARTVTVPldSSTPIMTANHIYWNLNGFsastILNDT 221
                  ***********99...45666666.555559*****************977774443323333333333558****************9**9766777 PP

                  EEEEEE.EEEEEECTTSGEEEEEEECTTCCC.CCCSSEEHCSSET.............EEEEEEEESSC........SEEEEEETTTTEEEEEEEETT CS
  Aldose_epim 172 elqiea.deylevdeeliptgelkdvkgtpf.dfrqpkaigedlk.............glDhayllksk........lkaviidpdkksgiklevstt 246
                  +l +    +y+++d+ lip g +  v+++p  df+ pk +g  ++             g+D+a+ l+ +        + +v  ++++++gi+l+v t+
   KKY23485.1 222 TLYMPYsQRYIQTDSILIPNGTFGTVSSKPVlDFTTPKLLGNAISdpsaqgicgagcqGIDNAFILDRPsgtgpeasNFPVLSLWSQNTGIRLDVGTN 319
                  777777799**********************************************************99******99999****************** PP

                  SSEEEEEECTTTT......................SEECCEEESSECTCETCCCECHHHT CS
  Aldose_epim 247 epalvvytgnflk......................kylsreglaletqmlpdepnhpefp 284
                  +++l++y  n ++                      +  ++  l +etq  +d +nhpe++
   KKY23485.1 320 QQGLQIYACNAQNgsipvkasqvarnkangvngttTVNKWGCLVIETQAWIDGINHPEWG 379
                  **********************************65566666678**************8 PP

>> DUF4369  Domain of unknown function (DUF4369)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0   0.00095       8.5      16      46 ..      65     110 ..      56     115 .. 0.81
   2 ?    5.8   0.0    0.0023        20      12      38 ..     219     244 ..     208     255 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00095
     DUF4369  16 vylsyddngvvklDsavv...............knGkFtfkgkvde 46 
                 v+l yd+++  ++D+++                knG+Ft++g++ +
  KKY23485.1  65 VVLGYDNSSQYPIDTVTNhtyfgpvvgrfanriKNGTFTLNGQTYH 110
                 667777778999999999999999999999999*********9765 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0023
     DUF4369  12 dgkkvylsyddngvvklDsavvknGkF 38 
                 +++++y+ y++  + ++Ds+ + nG+F
  KKY23485.1 219 NDTTLYMPYSQ-RYIQTDSILIPNGTF 244
                 56777877776.89************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.45s 00:00:01.07 Elapsed: 00:00:00.56
# Mc/sec: 2163.53
//
Query:       KKY23550.1  [L=627]
Description: putative exocyst complex protein exo70 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-75  252.4   0.0    2.7e-74  250.5   0.0    1.8  2  Exo70     Exo70 exocyst complex subunit


Domain annotation for each model (and alignments):
>> Exo70  Exo70 exocyst complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0     0.037   6.7e+02      67     120 ..      92     148 ..      52     157 .. 0.69
   2 !  250.5   0.0   1.5e-78   2.7e-74       2     374 ..     243     623 ..     242     624 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.037
       Exo70  67 peklfklLdmyealsdllpeleslfsgeaksevkaeleell....kklsetaksllee 120
                 ++ ++ +L  +++++ +l el+s     ++++  +e+++ll    k+l++t +s+l+e
  KKY23550.1  92 SAGMPQYLGALKRVERALAELNSTNMR-SNQQAVTEFSSLLaigsKQLEDTFRSILQE 148
                 566778889999999999999988875.333444444444322225666666666655 PP

  == domain 2  score: 250.5 bits;  conditional E-value: 1.5e-78
       Exo70   2 rwikayktavkvlfasErrlleqifgeseseresvfaeiakesitellqllrefgeavakkskrspeklfklLdmyealsdllpeleslfsgeaksevk 100
                 ++i +y++ ++++f +E +++++if+  ++er sv+  + +++++e++++lre+ ++++ ++   +++++++ ++++ ++ l+ +le+ ++g     ++
  KKY23550.1 243 SGIGTYAKGIEGMFLAESENISKIFP--PDERLSVLEMTGRGAMSEFARTLRELDNFIKANI--MSDCFLAF-EIIDLIAPLSYRLEQKTGG-----LR 331
                 79************************..*******************************999..********.*****************97.....** PP

       Exo70 101 aeleellkklsetakslleefeesikkdssk.spvppdggvheltrnvmnylrkLleykdtlssllkdlkdeswssas.ssqssssesssadgesllal 197
                 + ++++l++++etak+++ +++e++++++ + + +p+dg+  +++ ++m +l +L +y+++lss+l++ +d++w++++ + ++s + + s d+ +lla+
  KKY23550.1 332 SGFSDALRPIRETAKTSVPQLLEETRRRTNNiTILPNDGAPIPVVAETMARLTALGKYSQPLSSILSSIGDGNWRNSTrNAATSPTLDVSPDSFTLLAN 430
                 ****************************888**********************************************9999999999999999****** PP

       Exo70 198 fladlisaLesnLeakakl.ykdkslqgiFlmNNlhyilqkvkrs.elklll.gddwlrkhekkikqyaksYeresWskvlslLkdeglts........ 285
                 ++ d+is L + Le++ak  ++ k+lqg Fl+N +++i++++++s +l+ +l  +   +k+   +k+  + Y  + W++++ +L d  +t+        
  KKY23550.1 431 YFLDIISDLFNALESRAKTfHRSKPLQGCFLANCMSIIERSIRSSpDLARYLsAPPHSEKLAGFRKKGSTIY-VDVWRDASRTLFDVVYTNranapgtr 528
                 *******************99*******************************768888999999********.8************************* PP

       Exo70 286 ...........sskklssskekeqikekfkkFnsaFeelvrkqkswkvpDpeLReeLrreikekvipaYrkFlerykevdftknpekyvkytpedlenl 373
                            ++k+l  skek++ik kfk Fn++Feel++++ks  + ++++R  L ++++ ++ p+Y +F+++y+e d+   + k vkyt+ +l++ 
  KKY23550.1 529 tsgsgsqesaaIVKSLP-SKEKDNIKLKFKTFNTQFEELIARHKSLYM-ERDVRAALAKDVQVVIEPMYGRFWDKYHEIDK---KGKTVKYTKGELSQA 622
                 *****999998888888.9*****************************.9***************************8887...469*********998 PP

       Exo70 374 L 374
                 L
  KKY23550.1 623 L 623
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.73s 00:00:01.50 Elapsed: 00:00:00.66
# Mc/sec: 2868.92
//
Query:       KKY23551.1  [L=436]
Description: putative cytochrome p450 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-65  219.7   0.0    7.4e-65  219.5   0.0    1.1  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.5   0.0   4.1e-69   7.4e-65      33     452 ..       5     421 ..       1     432 [. 0.84

  Alignments for each domain:
  == domain 1  score: 219.5 bits;  conditional E-value: 4.1e-69
                 H-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHH CS
        p450  33 ygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgkl.sleelveeeaedlveklr 130
                 ygpi+r+ +++ +   l +p a++e+l +++  f ++  +a++     p+++ ++++  +e  + +++++  t  s +++ +l++++e+ ++ l+ekl+
  KKY23551.1   5 YGPIVRIAPNELS---LASPVAARELLSAGKG-FHKTDFYAVFP----PPENPDIFTEIRENVHAQKKRVAGTPYSLNAMqKLTPFIEDTINLLMEKLD 95 
                 8888888887754...6678899999999953.33333444444....79999*******999999999999999886777****************** PP

                 CCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHH..HHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 131 kkagesselditellskaaldvigsilFgarfdlledeklselvkaveelss..llskssvqllllfpllkylptkllrklkeavkklkdlldklieer 227
                 k a++ +++d+  +l ++a+dv+g+++F+ +++ l++  +   ++a++++ +  + +  + q+ l+  +l+    +l++ +       + ++++ +ee+
  KKY23551.1  96 KFADSEGQCDLGSWLHYFAFDVLGEVAFSQKYGFLDQGID--TENAIKTIDNaqWYDGIVGQIPLVDYFLRRN--PLWQYIPFLSSGNFLITRMALEEM 190
                 *************************************976..6666666633225555555555555555544..455555555555555566666665 PP

                 HHCHCHC.....SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTT...T-HHHHC CS
        p450 228 retldsa.....kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkr...eptyddl 318
                  +   ++     + +r d+l+ l++ +   ++++k+ + ++ a +   +faG+d t+st++ ++++++k+P v  +l +Eid++ +d+r   ++t+++ 
  KKY23551.1 191 GKRKPYEktagkETDREDLLSQLIKGH--LSNPDKFGEGDVFAVAHGAIFAGSDSTASTMQSFFFHILKDPAVYTRLCQEIDQATKDNRlspTVTWQEA 287
                 55544445678877899*********7..55556***************************************************************** PP

                 CT-HHHHHHHHHHHHHSCSSTTEEEEESSS.CEEETTEEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTH CS
        p450 319 qklpyldavikEtLRlhpvvplllpRevtk.dvvirgylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGe 415
                 q+l+y +a++kE++R +p+v l ++R+v+    +i+g ++p Gt+  vn + lhrd e+f p++++++peR+l+++++sk  + +++ FG G + CiG+
  KKY23551.1 288 QNLEYFQATLKEAMRVRPAVGLDITRYVPPnGAEIQGTKFPGGTRLAVNGWVLHRDTEIFgPDADTYRPERWLEDEQKSKTMDRYMFQFGGGSHLCIGR 386
                 ****************************8659*********************************************999999**************** PP

                 HHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSCSS CS
        p450 416 rlArmelklflatlLqnFevelqpetdpppileksgl 452
                 +lA +e++ +l tlL+n++++l++ +++ +   +  +
  KKY23551.1 387 NLALLEINKVLPTLLRNYRFKLCHPEKEITYHTT--F 421
                 ***********************96555544443..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.42s 00:00:00.89 Elapsed: 00:00:00.54
# Mc/sec: 2411.76
//
Query:       KKY23552.1  [L=287]
Description: putative c6 zinc finger domain containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-14   53.1   0.0    3.1e-14   52.6   0.0    1.2  1  Fungal_trans_2  Fungal specific transcription factor domain
  ------ inclusion threshold ------
       0.13   12.5   0.0       0.25   11.6   0.0    1.4  1  BTB             BTB/POZ domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   3.4e-18   3.1e-14     162     382 ..      17     285 ..       3     287 .] 0.85

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 3.4e-18
  Fungal_trans_2 162 rgpsfpseeyekllenkkeesdsgldplmGcsnslilliseisrLarekrsarkd..seleplsileeaseleqrllswkpr.ssdlepdldete 253
                     +++sf+ + ++ l ++  +e ++  +p+ G+ +++  l++e++rL r + + +       + +++l++a+ele++lls   +  +d+ ++ d+  
      KKY23552.1  17 QTTSFSGSGSTTLEDDGATEKKIVPHPWSGVAPRIQMLFAEVGRLLRYVYTPSLAttVPAQVETLLKSAKELEEELLSADIPgPDDIVDTGDART 111
                     556677777777777767777777999**************************99888899999*************555550444444444444 PP

  Fungal_trans_2 254 rasslskdltelfrlaaliylyrlvlglpps..........................spevqelvkkllellellpsspvaiasLlWplF.iaG. 320
                     ++++    ++ + r +al+ +yr++++l  s                          s  + +    +le l ++pss++  ++L+  l+ +++ 
      KKY23552.1 112 SKQDF-IIIADVTRCSALLEIYRVFPNLLQSrlgggipfafgssiealddfdyeaepSRWLTSFAIYILENLGKIPSSSG-TRPLQLILLnVCAn 204
                     44444.477****************999999999999999999999999999999988888999999*************.*****766536668 PP

  Fungal_trans_2 321 ......ceavde.............ddRdfvrrrleeleqsrl..gnvrrarqvleevWrrrddgeekidWrdvmekkgwell 382
                           ++a++                R+fv +rl el  +rl  + v +++++++evWrr+d+ge +  W+++m+++gw ++
      KKY23552.1 205 elrlssVHASSAdlgdvmaqniqtyKSRSFVMSRLLELS-TRLpaKPVLKIIDLIKEVWRRSDLGE-NLFWMEIMNQNGWQTV 285
                     8887766666669999999999***9*************.99999******************998.699**********876 PP

>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.8e-05      0.25      61      98 ..      55      92 ..      47      97 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.8e-05
                HHHHHHHHHHHHHSEEEC-CGGGHHHHHHHHHHHT-HH CS
         BTB 61 peafealLefiYtgeleitseenleelLaaadllqipr 98
                + ++++lL+++Yt  l +t  +++e lL+ a+ l+ + 
  KKY23552.1 55 FAEVGRLLRYVYTPSLATTVPAQVETLLKSAKELEEEL 92
                678999************989***********999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.48s 00:00:01.04 Elapsed: 00:00:00.71
# Mc/sec: 1216.82
//
Query:       KKY23553.1  [L=554]
Description: putative multicopper oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.9e-36  122.8   3.0    1.3e-33  115.6   0.0    3.8  3  Cu-oxidase_2  Multicopper oxidase
    2.2e-35  121.2   1.1    4.8e-34  116.9   0.5    2.8  3  Cu-oxidase_3  Multicopper oxidase
    4.7e-30  104.8   0.0    2.5e-29  102.4   0.1    2.0  2  Cu-oxidase    Multicopper oxidase


Domain annotation for each model (and alignments):
>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.22   1.3e+03     105     117 ..      16      28 ..      14      31 .. 0.90
   2 !    4.0   0.6    0.0066        39      44     122 ..      34     103 ..      29     112 .. 0.62
   3 !  115.6   0.0   2.2e-37   1.3e-33       3     136 ..     372     512 ..     370     513 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.22
                   EES.S-EEEEEEE CS
  Cu-oxidase_2 105 fkadnpGvwllHC 117
                   f++ +pG+w++ C
    KKY23553.1  16 FNQSYPGPWIMAC 28 
                   78899******99 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0066
                   EEEEEE-SSS.-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-T.TEEEEEEEES.S-EEEEEEESSH.HH CS
  Cu-oxidase_2  44 eiviqnntkl.pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvpp.ggwvairfkadnpGvwllHCHil.wH 122
                   ei+++n  k    ++H+HG++ +      g             n v +  ++ +p ++  ++rfka + G   +H+H + ++
    KKY23553.1  34 EITVTNRLKYnGTTIHWHGVRQYNSLYADGV------------NGVTQCPIAGQPfNDSYTYRFKAMQYGTSWYHSHYAlQY 103
                   5666666666545777777754444333333............445554444444577888999999999999999987344 PP

  == domain 3  score: 115.6 bits;  conditional E-value: 2.2e-37
                   S-SCCCCCCCEEEEEEEEEEEETCCTTTSSEEEEEET....TEEEEEEEEE-SSS...-........EEEEESS-EEEEEEEEECC.CCCCTCCSSG CS
  Cu-oxidase_2   3 ppklptllqltsgneeaseitngeefsentnvitlpk....gevveiviqnntkl...p........HPfHlHGhdfqvlgrgpgn.dpeedpksyn 83 
                   ++++pt+l++ +g++      n+++f+   + +++p+    +++v++ i +++              HP+HlHGhdf +l+++  + +  +  ++++
    KKY23553.1 372 NFSDPTILHVNQGTRA-----NPTTFQA--QLVVVPEsvasNAWVYLLISASDLPfddDlrtflpvaHPIHLHGHDFVILAQSDTPyW--PGLSTLK 459
                   7889999999966543.....6777774..44444444577**********8887654155666677*******************55..6667888 PP

                   CCGSSCBSEEEE-TTEEEEEEEES.S-EEEEEEESSHHHHHTT-EEEEEEECH CS
  Cu-oxidase_2  84 lenpvrrdtvqvppggwvairfkadnpGvwllHCHilwHldqGmalqfvvrpd 136
                   ++np+rrd++ +p+gg++ i+f+adnpG wl+HCHi++H ++G+a+q+++r++
    KKY23553.1 460 FDNPPRRDVALLPAGGYILIAFRADNPGSWLIHCHIAFHSSSGLAAQILERDG 512
                   8************************************************9975 PP

>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.9   0.5     8e-38   4.8e-34      19     113 ..      15     112 ..       3     118 .. 0.91
   2 ?   -2.4   0.0      0.77   4.6e+03      28      45 ..     186     203 ..     172     220 .. 0.70
   3 ?    1.3   0.0     0.053   3.2e+02      75     112 ..     471     507 ..     452     512 .. 0.85

  Alignments for each domain:
  == domain 1  score: 116.9 bits;  conditional E-value: 8e-38
                   EECTSSBS-EEEEETT-EEEEEEEE-S.SS-B-EEEET--S-GG.....GSCSGGG-B-T...T-EEEEEEE--S-SEEEEEEE--TTHHHTT-EEE CS
  Cu-oxidase_3  19 tvNgqfpgptievregdtvvvnvtNkl.dentsihwhGlqqrktswmDGvpgvtqcpiqp...gesftyrftvkqqagtlwYhshlslqqaaGlaGa 111
                   ++N+++pgp i +++gd+++++vtN+l  ++t+ihwhG++q ++ ++DGv+gvtqcpi+    ++s+tyrf++ q +gt wYhsh++lq+a+Gl G+
    KKY23553.1  15 VFNQSYPGPWIMACWGDDLEITVTNRLkYNGTTIHWHGVRQYNSLYADGVNGVTQCPIAGqpfNDSYTYRFKAMQ-YGTSWYHSHYALQYADGLLGP 110
                   79*************************6677***************************6433589**********.********************9 PP

                   EE CS
  Cu-oxidase_3 112 ii 113
                   ++
    KKY23553.1 111 LT 112
                   87 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.77
                   EEEEETT-EEEEEEEE-S CS
  Cu-oxidase_3  28 tievregdtvvvnvtNkl 45 
                   +i+v++g++  ++++N  
    KKY23553.1 186 NITVTRGKKYLLRIINTS 203
                   577777777777777766 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.053
                   B-TT-EEEEEEE--S-SEEEEEEE--TTHHHTT-EEEE CS
  Cu-oxidase_3  75 iqpgesftyrftvkqqagtlwYhshlslqqaaGlaGai 112
                   +++g      f++++  g+ + h h++++  +Gla  i
    KKY23553.1 471 LPAGGYILIAFRADN-PGSWLIHCHIAFHSSSGLAAQI 507
                   567777888999999.9************99**99876 PP

>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.4   0.1   4.3e-33   2.5e-29       8     136 ..     131     268 ..     125     293 .. 0.80
   2 ?   -0.8   0.0      0.24   1.5e+03      83     155 ..     432     509 ..     428     513 .. 0.65

  Alignments for each domain:
  == domain 1  score: 102.4 bits;  conditional E-value: 4.3e-33
                 EEETCBCTTSCBC.HSSCHCHHHHHTT--SEEEETTBSS.......C......TTTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEEEETCE CS
  Cu-oxidase   8 sDwyhkdakelekellasgkapadtppvpdavlingkggfnatladk......dgaslatltvepgktyrlriinvsaddslnfsIeGHkltVvevDgv 100
                 +D+ h +a +   ++  +g +    pp    +l+ng+g +n+t  +k      d++s + +tv++gk+y+lriin+s+d+++ f+I++H+ltV+ +D+v
  KKY23553.1 131 TDHLHNSAFSDFYQEITPGIG----PPAMVDILLNGTGIYNCTSDEKakgiceDQTSRYNITVTRGKKYLLRIINTSVDTTFVFAIDNHNLTVIGSDFV 225
                 555554444433334444444....888889************887688888899******************************************** PP

                 TTSEEEESCEEE-TTEEEEEEEEE...-SS.....SEEEEEEEE CS
  Cu-oxidase 101 yvepvevdsldIavGqrysvlvta...nqa.....pgnYwivas 136
                  ++p+ ++s++++ Gqry v+v+a   n +      +nYwi+  
  KKY23553.1 226 SIHPYVTNSIRVGIGQRYHVVVEAnplN-DkrpasEQNYWIRTI 268
                 ************************6652.1456889*****985 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.24
                 EEEEETSB-EEEEEE..........TCETTSEEEESCEEE-TTEEEEEEEEE-SSSEEEEEEEEGSSSCHHHHTTSEEEEEEE CS
  Cu-oxidase  83 lnfsIeGHkltVvev..........DgvyvepvevdsldIavGqrysvlvtanqapgnYwivasgrsnlieafengtaaailr 155
                 +++ ++GH + + +           + ++ +p + d   + +G    + + a++ pg + i++++      +   g aa+il+
  KKY23553.1 432 HPIHLHGHDFVILAQsdtpywpglsTLKFDNPPRRDVALLPAGGYILIAFRADN-PGSWLIHCHI----AFHSSSGLAAQILE 509
                 666677777776666666666666666666666777777777777777777887.9999999943....33355566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 3409.95
//
Query:       KKY23554.1  [L=358]
Description: putative blue light receptor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-11   44.0   0.0    2.3e-07   31.0   0.0    2.4  2  PAS_9     PAS domain
    1.7e-08   34.8   0.5    6.7e-08   32.8   0.0    2.1  2  RGS       Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   2.6e-11   2.3e-07      26     100 ..      84     158 ..      73     162 .. 0.93
   2 !   10.7   0.0   5.4e-05      0.49       4      98 ..     249     352 ..     246     355 .. 0.76

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 2.6e-11
       PAS_9  26 yspeevlgksitdlf..vtdpeanerlraaleqgrkkerevevvlirkngetfwvlltaspvkdddgelvgiivilr 100
                 y++ ev+ ++++ l+  +td    +rl++++e+ +  e  + + +++kng +fw+ll ++p++++ g++ ++i+ ++
  KKY23554.1  84 YHRFEVIPRNCRFLQgtHTDRAPVRRLKQCIEDRK--ESVELLLNYKKNGDPFWNLLYVAPLFNAAGKIAFFIGGQI 158
                 778899*****************************..*********************************9998665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 5.4e-05
       PAS_9   4 ilidnpdgrilyaNeaalrllG..yspeevlgksitdlf.....vtdpeanerlraaleqgrkkerevevvlirkngetfw....vlltaspvkdddge 91 
                 i++ ++++ i+++++++ ++l    ++  ++g  i+ ++     +++ + + r+++ +++g   + + e+ l+++   +f     +  + +pvkd++ +
  KKY23554.1 249 IVVQYDNFLIEFYSKGVTDMLKpsNTEGPIVGNEIFKFLkqnmvSSSTDYKARVKNSIRNGY--PVSIEINLQTRRAAYFRgdekFVTHWTPVKDENAR 345
                 66778999666**********97444777***********9999999999999999999999..77777777777665555333333777999988766 PP

       PAS_9  92 lvgiivi 98 
                 +  i+v+
  KKY23554.1 346 VGYIVVT 352
                 6665555 PP

>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   7.4e-12   6.7e-08      34     109 ..       9      87 ..       7      90 .. 0.94
   2 ?   -0.7   0.1      0.19   1.7e+03      57      57 ..     248     248 ..     193     308 .. 0.62

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 7.4e-12
                 HHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCSS.....STTTTTTHHHHHHHHHHHHHHHHHHH CS
         RGS  34 veefkkakeqeelkkkakeIyneylapsspkelnidkklreelekrleke.....qpsrklfeeaqeevfellekdsypkF 109
                 ve+++k    ++l+++++eI +e++ap+ p+++n++ +++ +l   ++++       ++++f eaqe++ +l  +d y++F
  KKY23554.1   9 VEQYNKI--LDDLTDTMTEIHKEFIAPDGPNQINLEGEVMRTLHVGMKTVvtstlPAMESIFSEAQEKIESLVYNDIYHRF 87 
                 6777777..788999*****************************************************************9 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.19
                 H CS
         RGS  57 y 57 
                 y
  KKY23554.1 248 Y 248
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 2210.93
//
Query:       KKY23555.1  [L=399]
Description: putative peptidase family m28 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-17   63.3   0.0    2.4e-16   60.0   0.0    2.2  1  Peptidase_M28  Peptidase family M28
    1.2e-06   28.4   0.0    3.4e-06   26.9   0.0    1.5  1  Peptidase_M20  Peptidase family M20/M25/M40


Domain annotation for each model (and alignments):
>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0   2.7e-20   2.4e-16       2     182 ..     184     366 ..     183     382 .. 0.79

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 2.7e-20
                    EEEEESTTCE..SE.EEEEEEE--B-TTT....TCCT---TTTTHHHHHHHHHHHHHCHHGGCCS.SEEEEEEEESSCSGSSHHHHHHHH.HHCCC CS
  Peptidase_M28   2 viatlegkat..de.vlllgAHyDsvgvg....rgpifvGAdDnAsgvaalLelarvlaasgsrp.krgvrflffdaEEagllGSkafak.akpel 88 
                    +ia++e+k +  +    +lgAH Ds  +      +p   GAdD+ sg++++Le  r+la sg +p +  v f ++ aEE gl+GS+  a+ +k+  
     KKY23555.1 184 IIARFEPKVRnfSLpLTILGAHQDSANYLfpllPAP---GADDDCSGTVSILEAFRILALSGYTPkDGPVEFHWYAAEEGGLMGSQDIARyKKESG 276
                    688888888744332449*********999999999...**************************9999********************8777799 PP

                    TTEEEEEEECS-SSSS--EEEHHHHHHCHHHHHHHHHHHHHTT-TTSCCEEEEESSTT-STTHHHHTTT--EEEE........CTSSS-TTT.TST CS
  Peptidase_M28  89 kkiaavlnlDmvgsggkellfesgdkssselekelkalakpvgraaaedpfdersgrgrsDhspflkagvpvldl........aetgfpevy.Htp 175
                    ++i a+++l  v +++ +    +++ ++s+ +++++  a+ +      d  +++     sD+ +f+k  +p++ +         + g  ++y Ht 
     KKY23555.1 277 ATIGAMIEL--VSRQRIKAP-PETQLNRSGCKEYISIPAAVF------DLGPNA----GSDYMSFTKLDFPAAFAsegdpmagGFPGEMDKYvHTV 359
                    999999876..555555555.456777888888888444433......444444....48888888888888888888888876888888888*** PP

                    TSSGGGB CS
  Peptidase_M28 176 rDtldni 182
                    +Dt+d  
     KKY23555.1 360 KDTMDVD 366
                    ****954 PP

>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   3.8e-10   3.4e-06      32      98 ..     218     286 ..     214     299 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3.8e-10
                    STTTTTTHHHHHHHHHHHHHHHHHTTT-SS.EEEEEEESTTSSTTTHHHHHHHHHH.TTTCESEEEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  Peptidase_M20  32 GrGaddmkggvlaalealralkdegikpkg.tivllfqpdEEggrgGakallegle.erekvdavfelh 98 
                    ++Gadd+  g +++lea+r l+ +g++pk  ++++   ++EEgg +G++ ++   +  +  + a++el+
     KKY23555.1 218 APGADDDCSGTVSILEAFRILALSGYTPKDgPVEFHWYAAEEGGLMGSQDIARYKKeSGATIGAMIELV 286
                    89**************************888***********988******995554566777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.51
# Mc/sec: 2342.86
//
Query:       KKY23556.1  [L=215]
Description: hypothetical protein UCRPC4_g02819 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0037   17.3  19.5     0.0037   17.3  19.5    2.1  2  rRNA_processing  rRNA processing
  ------ inclusion threshold ------
        6.1    6.8  18.2        7.7    6.5  18.2    1.1  1  Asp-B-Hydro_N    Aspartyl beta-hydroxylase N-terminal region


Domain annotation for each model (and alignments):
>> rRNA_processing  rRNA processing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3  19.5   4.1e-07    0.0037      14     119 ..      41     145 ..      34     151 .. 0.81
   2 ?   -3.1  13.0      0.79     7e+03      70     123 ..     142     180 ..     132     207 .. 0.43

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.1e-07
  rRNA_processing  14 kskeikkeltrkarlrkeYfKllkkegleeeekvakeaekskneeeeskkskkeareeeeklkfkerkeivkerkeekreekleavqeklerik 107
                      k+++ik +l +ka+++k Y K  ++e  + ++ + +ea+ + +++e   ++   a+ +++   + +r+++++er +e+   +++++q+k  +  
       KKY23556.1  41 KTQKIKNDLIQKAKVKKAYQKIREQELANAPRINYDEAKVQDEQHEAAVSRDAAAEDSHGVELHPDRQAMLEEREAEETALREKREQQKGRKY- 133
                      99*****************************99888888888888888888888888888888899999999999999998888888887777. PP

  rRNA_processing 108 alekkkkerekr 119
                      + e+k ++r ++
       KKY23556.1 134 TGEEKPRRRRQK 145
                      444444444333 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.79
  rRNA_processing  70 eeeeklkfkerkeivkerkeekreekleavqeklerikalekkkkerekrkkkL 123
                      ++++   +++++e++++r+   +e+                k+++ere++++ +
       KKY23556.1 142 RRQKPSVYSKEAEEAERRRLALQERA---------------KRREERERERQAM 180
                      22222222222222222222222222...............2222222222222 PP

>> Asp-B-Hydro_N  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  18.2   0.00085       7.7      88     219 ..      45     176 ..      11     192 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00085
  Asp-B-Hydro_N  88 eeeqlaeekekqkveeevkEqlkkvkeeivvke.....eeeegieeepqleeekkllkedsd..erqeeleagkvkeevEeslkveetvseeakkd 176
                     +++l ++++ +k+ ++++Eq+                +e++++ e+ + ++++   +eds   e + + +a   ++e+Ee++  e+  +++ +k 
     KKY23556.1  45 IKNDLIQKAKVKKAYQKIREQELAN-------AprinyDEAKVQDEQHEAAVSRDAAAEDSHgvELHPDRQAMLEEREAEETALREKREQQKGRKY 133
                    2333333333333333444433333.......2444434566666666666666666666652244556666667777777777777777777666 PP

  Asp-B-Hydro_N 177 mkekaseeenekskepveeaekekaeakeveeedkeeeaeede 219
                      e+  + + +k +   +eae+ ++ +  ++e++k +e++e e
     KKY23556.1 134 TGEEKPRRRRQKPSVYSKEAEEAERRRLALQERAKRREERERE 176
                    6666666666666666666666666666666666655544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1722  (0.0960455); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.70s 00:00:01.36 Elapsed: 00:00:00.63
# Mc/sec: 1034.60
//
Query:       KKY23557.1  [L=551]
Description: putative choline transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-42  146.3  41.6    1.5e-42  146.0  41.6    1.0  1  AA_permease_2  Amino acid permease
    4.5e-23   81.6  33.1      6e-23   81.2  33.1    1.0  1  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.0  41.6   1.6e-46   1.5e-42       1     422 [.      37     484 ..      37     487 .. 0.81

  Alignments for each domain:
  == domain 1  score: 146.0 bits;  conditional E-value: 1.6e-46
  AA_permease_2   1 lsllsafalvigsv....igsgifvknlaasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkva...flsawfnwfayv 89 
                    ++++s +a ++++     +++g++ + l+  ggp ++ ++++a+  ++   ++ +aEl+sa+p+s  +y++++ ++gk+     + ++w+n fa+ 
     KKY23557.1  37 FGFWSICAASLTIDnawgASAGSLTTALYDGGGPGVLYTFLVACSFYC-FIGAGLAELASAIPSSASVYHWASVTSGKYGRvssWYAGWWNYFAWN 131
                    789999999998766677778887775677788888888888888887.5777*****999************99755444555************ PP

  AA_permease_2  90 pvlasilsvaasyllnalgp...dlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitv.dgggfsslstetdt 181
                    +++as +  +a+++l++ +     +++++w++++ + ++++  + i ++g + +ak++n  g l +++ l+ l++++++    g+g  s+s+ ++ 
     KKY23557.1 132 FGCASASLFGANAILGMYSLfhdGFVPDRWMIFIAYLGVTWMGCGIVLFGQRVLAKLTNAFGFLCLTIWLVSLLVVAILPStTGKGYASHSFVWKD 227
                    *****9999*****99864345577899******************************99777777544333333333322123333334666777 PP

  AA_permease_2 182 ffpn...gwpg..vllgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpd.dei..anlsnlgsvaalffeav 267
                    ++++    ++g  + lg+l  ++ ++  +++++ +ee  ++k+++pk+i+  l+  ++ ++ + ia+l++++  d++  + + nl+ +aa++++a+
     KKY23557.1 228 WNNQvgySSNGfvFCLGMLNGAFGIGTPDGCTHLAEEipDPKRNIPKGIVAQLVGGILTTFTFYIALLYAITNlDTVldSAIPNLP-LAAIYLQAT 322
                    77776546666444889999*****************555569******8777777777777777767666663666554455554.8******** PP

  AA_permease_2 268 ggkvvaiivvilialsllgaintavigssrvlealardgvlP..rffakvn.kfgspiraiiltaivslillllfllassaaynfllsvsslglii 360
                    ++ +++  + +l+ + ++  +++a++++sr+l+ lard++lP  + fa+v+ +f  p++++i    vs+il++++++ s++a+n+ + v++++   
     KKY23557.1 323 NSNAGTCGLLVLFLIDIMVTLPGAYMTASRMLWTLARDDALPysSTFAHVSpRFRNPFASTIACGCVSTILGCVYIG-STTAFNAFVGVFTILTTM 417
                    *99**********************************************************************9987.58**************** PP

  AA_permease_2 361 syllliigalilrkkrphlkrpgk.....ilvaiigalfllfllvalffppkgpatqssliytiilt 422
                    syl +++  l+ ++k  + + +++     ++v  i++ +++++ ++ +fp   p+  +s++y+++l 
     KKY23557.1 418 SYLCALLPHLLTKRKYVIPGPFWMppkvaYPVIGIACAYIIVFNIIYMFPYYLPTDAESMNYSCLLS 484
                    ******99999999999999988866655666666666666666777788889999999****9875 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2  33.1   6.7e-27     6e-23      20     460 ..      61     493 ..      47     501 .. 0.76

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 6.7e-27
  AA_permease  20 gvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgp...elGfviGln.ylfswitvlaleltaasiliqfwelvtdlpka 113
                    +l  +G+ g+l  +l+a+ ++ +++  l+e+a+++p+s++ y++as + g+     +++ G+  y+   +  + + l++a+ ++++ +l++d +  
   KKY23557.1  61 TTALYDGGGPGVLYTFLVACSFYCFIGAGLAELASAIPSSASVYHWASVTSGKygrVSSWYAGWWnYFAWNFGCASASLFGANAILGMYSLFHDGFVP 158
                  4566777777*************************************86654433389999999835555555556789***********99996555 PP

  AA_permease 114 wvt.....gavflvvlliinlvgvkvygeaefi.lalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeegafknfisvf 205
                  + +      + ++ + ++i l+g +v ++      +l++ i ++++++v i +++ gk+ +    +f+++++ +   + ++g           f+ ++
   KKY23557.1 159 DRWmifiaYLGVTWMGCGIVLFGQRVLAKLTNAfGFLCLTIWLVSLLVVAILPSTTGKGYAS--HSFVWKDWNNQVGYSSNG---------FVFCLGM 245
                  55543766333444447899999999999765525889999999******999999999888..889999999444455555.........78***** PP

  AA_permease 206 vivvfaftGielvaiiagEvkdPeksiPkailq....vviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplinavilta 299
                     +f++      + +a+E+ dP+++iPk+i       +++++ fY+ +l++i+ l    d  + n     +++  i+++ +++++    + ++ l+ 
   KKY23557.1 246 LNGAFGIGTPDGCTHLAEEIPDPKRNIPKGIVAqlvgGILTTFTFYIALLYAITNLDTVLDSAIPN-----LPLAAIYLQATNSNAGTCGLLVLFLID 338
                  ******************************975222256677777777777777665444444444.....79************************* PP

  AA_permease 300 alssansslysasRvlyslakdglaP...kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfRkal 394
                  ++ ++ ++ ++asR+l++la+d+++P   +++ ++ + ++P ++ ++   +++++ +l  ++ + +++fn ++ + ++ + + +l+++l +l  ++++
   KKY23557.1 339 IMVTLPGAYMTASRMLWTLARDDALPyssTFAHVSPRFRNPFASTIA---CGCVSTILGCVYIGSTTAFNAFVGVFTILTTMSYLCALLPHLLTKRKY 433
                  ******************************************99765...5666666666666666**************************777776 PP

  AA_permease 395 kyqgrsieelgfkaallplgvilvlaaliiillilalyayltv..kkgpkdwgaasfaaaylivllfl 460
                   + g          ++ p  ++ v+ + ++++++ ++++ +++  +++ ++++++  ++  l++++ l
   KKY23557.1 434 VIPGP--------FWMPPKVAYPVIGIACAYIIVFNIIYMFPYylPTDAESMNYSCLLSGGLTIFVSL 493
                  66665........4444444444444444444444444443331124555666666665555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.32s 00:00:00.84 Elapsed: 00:00:00.52
# Mc/sec: 3191.19
//
Query:       KKY23558.1  [L=215]
Description: putative phosphotransferase enzyme family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.71s 00:00:01.25 Elapsed: 00:00:00.76
# Mc/sec: 854.45
//
Query:       KKY23559.1  [L=501]
Description: putative hexose transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-89  298.3  27.4    1.2e-88  298.0  27.4    1.0  1  Sugar_tr  Sugar (and other) transporter
    3.4e-24   85.4  30.1    3.4e-24   85.4  30.1    2.1  2  MFS_1     Major Facilitator Superfamily
     0.0011   17.5   4.1     0.0011   17.5   4.1    1.6  2  TRI12     Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.0  27.4     2e-92   1.2e-88       4     452 .]      28     473 ..      25     473 .. 0.95

  Alignments for each domain:
  == domain 1  score: 298.0 bits;  conditional E-value: 2e-92
                 HHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS- CS
    Sugar_tr   4 vaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsv 102
                 + ++ ++  gYd  ++g+  ++ ++ + f l++++          gl  si++vG+++ +++a +l +r GR +++  aa  ++ ga++qaaa+   ++
  KKY23559.1  28 TSVVDSTTWGYDGSLMGSLNAMDQYTSYFSLTTATL---------GLNSSITYVGGAVAAIIAAPLCNRRGRWQIMFLAACALILGAIVQAAAP---NI 114
                 556778999***************999999998884.........7788*********************************************...** PP

                 TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHT CS
    Sugar_tr 103 evlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvek 201
                  ++i+gR+++G+g+G+ +v +  y++E Ap+k+R  + +l+ +++++G l+aa++ +g +++s+++ wr++  +q+vp+++ l+ll flPESPr+lv +
  KKY23559.1 115 GAFIAGRFIIGMGAGFGNVSAVSYAAETAPPKWRALVLGLFYTCWAVGTLLAAGVCYGSQRISSTWAWRLPSLIQIVPPVIALALLPFLPESPRWLVYN 213
                 *************************************************************************************************** PP

                 T-HHHHHHHHHHHHHC.....HHHHHHHHHHHHHHHHHHH......HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HH CS
    Sugar_tr 202 gkeeeakevlaklrge.....edadrelaeekdsleaeqeee.kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks...ll 291
                 +++e a+evl    g+     ++++ +l e++d+++ e+++  +    e++++ ++r+rl++++ ++++  ltG n+i+yy +t++e++g+s     l+
  KKY23559.1 214 DQTEYAQEVLMVTTGTtdpnhPLVQVQLREIVDTINWEKSQGkQLGFLEIVKTESNRKRLMLACSVAVLAMLTGSNVITYYFSTMLEQAGISSAhtqLE 312
                 ***********977777788899999********9988666677777777777789*************************************999*** PP

                 HHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH...HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHH CS
    Sugar_tr 292 vtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg.ivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskala 389
                 ++ii+++++ v+ + + f+ +r+GRRtl l++++g+ai+f++lg   a  +++++++  ++ +++i+lf+ ++++g++p+  ++ +E+ + s+R+++ a
  KKY23559.1 313 INIILSAWQLVVAVTGSFTAERIGRRTLCLVSVSGAAIFFFMLGgLTARYGNSTNQSGIYGTVACIFLFLGAYSFGLTPLSVMYQPEVLSYSIRATGVA 411
                 ********************************************87788888888******************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 390 iavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 + +++   + +++s++fp+++e+ig ++v++++a++ vl +i+v++  +etkg+tlee++e f
  KKY23559.1 412 VYTFIAKGCGLFVSWVFPFAFESIG-WKVYMINAAFDVLCAIWVWWYWVETKGKTLEEVDECF 473
                 *************************.*********************************9976 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4  30.1   5.6e-28   3.4e-24      22     343 ..      51     415 ..      19     424 .. 0.78
   2 !    3.1   4.9    0.0061        36     119     180 ..     406     465 ..     399     472 .. 0.83

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 5.6e-28
       MFS_1  22 alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlgagalfpagaaliadwfpkeer 119
                  +++ + ++ +++gl  ++ ++g ava++++++l +r Gr  +++l++ +++lg ++    a+++ +++++r++ G+gag+++ ++++++a+ +p++ r
  KKY23559.1  51 QYTSYFSLTTATLGLNSSITYVGGAVAAIIAAPLCNRRGRWQIMFLAACALILG-AIVQaAAPNIGAFIAGRFIIGMGAGFGNVSAVSYAAETAPPKWR 148
                 446678899999*************************98888************.44441349999********************************* PP

       MFS_1 120 graigllsagfslGailgpllgg...llasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........................... 188
                 ++++gl+++++++G++l++++      ++s + Wr++ +i  +  ++a+    ll + ++++r+ +   + e                           
  KKY23559.1 149 ALVLGLFYTCWAVGTLLAAGVCYgsqRISSTWAWRLPSLIQIVPPVIALA---LLPFLPESPRWLVYNDQTEyaqevlmvttgttdpnhplvqvqlrei 244
                 ***************999777554556778888**************977...666666666666666666667*********9999999999999999 PP

       MFS_1 189 ........kgtgpaplvpawkallkdpvlw.illialllfffgfsglltllplylqevlgls...glllaglllallalvgailallagrlsdrlgrrr 275
                         ++ ++ +++++ k   +++ l+ ++ +a+l + +g + +++++ + + e+ g+s   + l++ ++l++ +lv+   a+ +++ + r+grr+
  KKY23559.1 245 vdtinwekSQGKQLGFLEIVKTESNRKRLMlACSVAVLAMLTGSNVITYYFST-MLEQAGISsahTQLEINIILSAWQLVV---AVTGSFTAERIGRRT 339
                 99998888666666666655555555544334444444445555558888888.5**********66999999*******9...655677779****99 PP

       MFS_1 276 rlllallllllaalglallavt........ssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfnt 343
                   l++++++++++++l  l +           +  ++++++++G   +g++  s++++   +++ + ++t ++++++
  KKY23559.1 340 LCLVSVSGAAIFFFMLGGLTARygnstnqsGIYGTVACIFLFLGAySFGLTPLSVMYQPE-VLSYSIRATGVAVYTF 415
                 9999999999999999999999***98866666666668888999777776555555544.4434666666666665 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.0061
       MFS_1 119 rgraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperk 180
                 r+ ++++++  +    ++   + ++  +s+gW  v++i+a++ +l+++ +++++++e + + 
  KKY23559.1 406 RATGVAVYTFIAKGCGLFVSWVFPFAFESIGWK-VYMINAAFDVLCAI-WVWWYWVETKGKT 465
                 677778888877777788889999999*****9.99999999999988.88***99987765 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   4.1   1.8e-07    0.0011      81     213 ..      64     200 ..      56     217 .. 0.83
   2 ?   -3.3   0.1      0.35   2.1e+03      88     108 ..     345     365 ..     336     384 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.8e-07
       TRI12  81 slfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpagaspl.fvgelmsnktk..flgllivsipvv 176
                 +l s++  +g av+ ++   l +r gr  ++ l+    ++gaiv ++a ++ +++a   ++g+ ag    s + +  e    k +  +lgl+     v 
  KKY23559.1  64 GLNSSITYVGGAVAAIIAAPLCNRRGRWQIMFLAACALILGAIVQAAAPNIGAFIAGRFIIGMGAGFGNVSAVsYAAETAPPKWRalVLGLFYTCWAVG 162
                 678899999**************************999****************************988776537889988876522678877655544 PP

       TRI12 177 vtsgls.pylgqrlaiqgswrwifyiyiitsaiavlli 213
                 ++ +++  y  qr++   +wr    i i+   ia+ l+
  KKY23559.1 163 TLLAAGvCYGSQRISSTWAWRLPSLIQIVPPVIALALL 200
                 44334316778***********9******999998875 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.35
       TRI12  88 ttgqavsilvmgrltdrfgrr 108
                   g a+  +++g lt r+g  
  KKY23559.1 345 VSGAAIFFFMLGGLTARYGNS 365
                 568899999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.71s 00:00:01.40 Elapsed: 00:00:00.63
# Mc/sec: 2405.40
//
Query:       KKY23560.1  [L=436]
Description: hypothetical protein UCRPC4_g02823 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-33  114.8   0.1    4.3e-33  114.8   0.1    2.8  2  Rxt3      Histone deacetylation protein Rxt3
     0.0015   18.6   0.0       0.01   15.9   0.0    2.2  2  LCCL      LCCL domain


Domain annotation for each model (and alignments):
>> Rxt3  Histone deacetylation protein Rxt3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   2.0      0.46   4.2e+03      67      67 ..     165     165 ..      75     210 .. 0.62
   2 !  114.8   0.1   4.8e-37   4.3e-33       1     127 []     253     366 ..     253     366 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.46
        Rxt3  67 k 67 
                 +
  KKY23560.1 165 H 165
                 1 PP

  == domain 2  score: 114.8 bits;  conditional E-value: 4.8e-37
        Rxt3   1 tvkvprerlkeskreeivarrelWGtdvYtdDSDvvaaliHsGfirgewaedvdvslldlakkkakkkskeekskdeseaekklekkkkrtpvnvpekk 99 
                 tv+v+r  l +++r  i+ar+ lWG+++YtdDSD++aa+iHsGfi+g+w  +v v++l             e+  +e++ + +  ++ ++ pv +p+++
  KKY23560.1 253 TVRVSRSWLADRHRAAICARQFLWGSGIYTDDSDPIAAAIHSGFIKGAWDASVAVDVL-------------EDIIKEQNPKVDYAENVPSSPVAPPPDR 338
                 8***************************************************999776.............45566777788899999*********** PP

        Rxt3 100 DlhvtlliLpkLekYastvrygikSRew 127
                 Dlh+tll+Lp+Le+Y++++ryg kSR+w
  KKY23560.1 339 DLHITLLVLPQLERYEGSIRYGQKSRTW 366
                 **************************** PP

>> LCCL  LCCL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.1e-06      0.01      34      60 ..     273     299 ..     262     322 .. 0.82
   2 ?   -0.9   0.0       0.2   1.8e+03      67      91 ..     344     368 ..     340     372 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.1e-06
                 --EESSSSEETTSBHHHHHHHHTSS-T CS
        LCCL  34 asvvGskvYssdSsICkAAihaGvidn 60 
                 + ++Gs +Y++dS   +AAih+G i+ 
  KKY23560.1 273 QFLWGSGIYTDDSDPIAAAIHSGFIKG 299
                 5789********************943 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.2
                 EEEE--B-S---EE-SS-EEE--S- CS
        LCCL  67 vtiveelkeykgskqngieSeslsk 91 
                 + +  +l++y+gs ++g +S  + +
  KKY23560.1 344 LLVLPQLERYEGSIRYGQKSRTWPE 368
                 566778999********99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.49
# Mc/sec: 2670.08
//
Query:       KKY23561.1  [L=446]
Description: putative golgi integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     5e-163  542.8   2.4   5.8e-163  542.6   2.4    1.0  1  CLN3       CLN3 protein
  ------ inclusion threshold ------
       0.99    9.7   2.3        1.9    8.9   2.3    1.3  1  PHINT_rpt  Phage-integrase repeat unit


Domain annotation for each model (and alignments):
>> CLN3  CLN3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  542.6   2.4  6.5e-167  5.8e-163       2     398 .]      20     434 ..      19     434 .. 0.90

  Alignments for each domain:
  == domain 1  score: 542.6 bits;  conditional E-value: 6.5e-167
        CLN3   2 aFwllGLiNNvlyvviLsAAlDlvgkstpkgvvlladilPsllikllapffihkvpysvrvlllvllsalgmllvalsks......lavkllGvvlasl 94 
                 +Fwl+GLiNNvlyv+iLsAAlDlvg+s+pk+vvllad++Ps+++kl+ap+fih vpy vr++++v+lsa+gmll+ l++s      +++k++Gv+lasl
  KKY23561.1  20 SFWLFGLINNVLYVIILSAALDLVGPSVPKAVVLLADVVPSFITKLCAPYFIHAVPYPVRIITFVFLSATGMLLIGLTPSytdggtISIKMAGVILASL 118
                 7******************************************************************************999***9************* PP

        CLN3  95 ssGlGEltfLqlthyykksslaawssGTGaaGlvGallyalltsllglsvkatllvslvlPlllllsyflllekkkskkeakaeeeeeeyekleeeeee 193
                 ssG GEl+fL+lth+y+ +slaaw+sGTG+aGl+Ga++yal t++lg+sv++t+l+s++lP+++l+s+f++l++ + + ++k e e++    l+++eee
  KKY23561.1 119 SSGGGELSFLGLTHFYGPFSLAAWGSGTGGAGLAGAGAYALATTTLGFSVRTTILASAFLPVIMLVSFFIILPHGPLHLARKVELEQA----LDDDEEE 213
                 ***************************************************************************9988876654432....2222222 PP

        CLN3 194 ee.................eeseeeelleseaasaaeeeeeees..........selkkslkeklklvksLllkymlPLllVYlaeYliNqgvaptllf 265
                 +e                 ++s  ++++ ++++          s          s++k++++++l++v +L++++mlPLllVY+aeY+iNqgv+ptllf
  KKY23561.1 214 AEpaldadisasedqgllaSTSLPNSRNIVRSQ----------SpihrnnhrqaSSTKNDFQTNLRRVSKLFFPFMLPLLLVYIAEYTINQGVSPTLLF 302
                 222345667666665554422222223333333..........23333444444899999*************************************** PP

        CLN3 266 pleekpfkslrdqYrvyqvlYqlgvfisRssvsllrirklyllsllQvlnlvllllealyelflpsiylvfllilyeGllGGaaYvntfaeiseeveke 364
                 pl ++pf+++r++Y++y++lYqlgvfisRss+++lri++lyl+s+lQ+lnlvll+l++l+++ lp++ylvf++i++eGllGG++Yvntfaei ++v+ +
  KKY23561.1 303 PLPSTPFTHYRSFYPFYNFLYQLGVFISRSSTPFLRIHNLYLPSFLQCLNLVLLTLHSLFNF-LPNVYLVFIIIFWEGLLGGLVYVNTFAEIGDKVPLQ 400
                 ************************************************************77.************************************ PP

        CLN3 365 erefslgavsvsDslGillagllalplenalCkl 398
                 +refslga++vsDs+Gi++ag+la+ le+ lC++
  KKY23561.1 401 DREFSLGATTVSDSAGICIAGFLAMGLETGLCEW 434
                 ********************************86 PP

>> PHINT_rpt  Phage-integrase repeat unit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.3   0.00021       1.9      12      31 ..     304     322 ..     303     325 .. 0.95

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00021
   PHINT_rpt  12 LpssPekiYaedwegWsgFL 31 
                 Lps+P ++Y++++  +++FL
  KKY23561.1 304 LPSTPFTHYRSFYP-FYNFL 322
                 9*************.****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2953.79
//
Query:       KKY23562.1  [L=1064]
Description: putative elongation factor 3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-48  163.0   0.9      3e-24   86.1   0.1    4.1  2  ABC_tran        ABC transporter
    5.3e-29  100.1   1.0    5.3e-29  100.1   1.0    2.1  1  4HB             Four helical bundle domain
    4.2e-16   59.6   0.1     0.0022   17.9   0.0    4.4  4  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    5.5e-15   55.4   0.0      2e-06   27.4   0.0    3.5  3  SMC_N           RecF/RecN/SMC N terminal domain
    1.1e-09   39.1   2.6    0.00071   20.1   0.2    3.4  3  AAA_23          AAA domain
    4.9e-09   35.8   0.1     0.0041   16.8   0.0    2.8  2  AAA_29          P-loop containing region of AAA domain
    2.9e-07   30.5   0.0     0.0017   18.3   0.0    2.9  2  RsgA_GTPase     RsgA GTPase
    6.2e-07   29.5   0.0     0.0064   16.6   0.0    2.8  2  MMR_HSR1        50S ribosome-binding GTPase
    9.3e-07   29.2   0.0      0.012   15.9   0.0    2.6  2  AAA_28          AAA domain
    6.1e-06   26.4   0.0    0.00039   20.5   0.0    2.8  2  Dynamin_N       Dynamin family
    9.7e-06   26.1   0.2       0.24   11.8   0.0    3.6  3  AAA_16          AAA ATPase domain
    1.1e-05   25.7   0.0       0.19   12.0   0.0    3.5  2  AAA_22          AAA domain
    6.3e-05   23.5   0.0       0.91   10.1   0.0    3.4  2  AAA_18          AAA domain
      7e-05   22.6   0.0      0.089   12.5   0.0    2.8  2  PduV-EutP       Ethanolamine utilisation - propanediol utilis
    7.4e-05   23.0   1.1       0.16   12.1   0.0    3.4  2  DUF87           Helicase HerA, central domain
    0.00012   22.5   0.0        1.2    9.5   0.0    3.7  3  AAA             ATPase family associated with various cellula
    0.00014   21.5   0.1       0.14   11.7   0.0    2.8  2  AAA_27          AAA domain
    0.00026   21.4   0.0       0.57   10.6   0.0    2.8  2  RNA_helicase    RNA helicase
    0.00028   20.0   0.2       0.69    8.8   0.0    2.5  2  MeaB            Methylmalonyl Co-A mutase-associated GTPase M
    0.00051   20.0   0.0        0.3   11.0   0.0    2.5  2  NACHT           NACHT domain
     0.0011   19.1   0.0        1.6    8.9   0.0    3.1  2  AAA_33          AAA domain
     0.0013   18.5   0.0        1.7    8.3   0.0    2.7  2  AAA_24          AAA domain
     0.0016   17.7   0.2        1.5    7.9   0.0    2.6  2  G-alpha         G-protein alpha subunit
     0.0024   18.0   0.0       0.33   11.2   0.0    3.0  2  SbcCD_C         Putative exonuclease SbcCD, C subunit
     0.0029   18.0   0.2       0.64   10.5   0.3    3.1  2  HEAT_2          HEAT repeats
     0.0042   17.1   0.0        5.1    7.2   0.0    2.7  2  AAA_14          AAA domain
     0.0045   16.7   0.0        2.5    7.8   0.0    2.8  2  AAA_30          AAA domain
     0.0063   16.3   0.1          4    7.2   0.0    2.8  2  ATP_bind_1      Conserved hypothetical ATP binding protein
     0.0079   16.4   0.0        2.6    8.5   0.1    3.6  2  HEAT            HEAT repeat
     0.0091   15.2   0.0       0.37    9.9   0.0    2.5  2  NB-ARC          NB-ARC domain
     0.0097   15.5   0.0         12    5.4   0.0    3.5  3  cobW            CobW/HypB/UreG, nucleotide-binding domain
     0.0099   15.6   8.4       0.75    9.4   0.0    3.6  3  AAA_15          AAA ATPase domain
  ------ inclusion threshold ------
      0.012   15.6   0.0         21    5.1   0.0    3.9  3  AAA_5           AAA domain (dynein-related subfamily)
      0.012   15.4   0.0       0.75    9.6   0.0    2.7  2  CLP1_P          mRNA cleavage and polyadenylation factor CLP1
      0.014   15.2   0.0        2.3    8.0   0.0    2.3  2  MukB            MukB N-terminal
      0.015   15.5   0.0        9.5    6.5   0.0    2.6  2  Roc             Ras of Complex, Roc, domain of DAPkinase
      0.019   14.7   0.1         13    5.4   0.0    3.1  2  IstB_IS21       IstB-like ATP binding protein
      0.028   14.2   0.0        5.3    6.7   0.0    2.7  2  Cytidylate_kin  Cytidylate kinase
      0.029   14.3   0.8        3.7    7.4   0.0    3.1  2  ATPase_2        ATPase domain predominantly from Archaea
      0.033   14.1   0.0        1.8    8.5   0.0    2.4  2  Rad17           Rad17 P-loop domain
      0.057   12.9   0.0         11    5.4   0.0    2.4  2  AAA_7           P-loop containing dynein motor region
      0.068   12.3   0.0         10    5.2   0.0    2.5  2  DUF815          Protein of unknown function (DUF815)
      0.073   12.5   0.1        3.9    6.8   0.0    2.8  2  Mg_chelatase    Magnesium chelatase, subunit ChlI
      0.083   12.6   0.0        5.9    6.6   0.0    2.5  2  PRK             Phosphoribulokinase / Uridine kinase family
      0.086   11.9   0.1        3.2    6.7   0.0    2.4  2  T2SSE           Type II/IV secretion system protein
      0.089   12.1   0.6        6.7    6.0   0.1    3.2  3  FtsK_SpoIIIE    FtsK/SpoIIIE family
       0.15   11.7   0.0         10    5.7   0.0    2.5  2  ATP-synt_ab     ATP synthase alpha/beta family, nucleotide-bi
       0.15   11.5   0.2        2.4    7.7   0.1    2.4  2  FeoB_N          Ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   3.1e-22   1.1e-19       1     137 []     463     594 ..     463     594 .. 0.75
   2 !   86.1   0.1     8e-27     3e-24       2     137 .]     707     947 ..     706     947 .. 0.72

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 3.1e-22
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--...SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHHHHHTCHHHHHHHSTTGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp...teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvrenesdeeiekalsklglke 96 
                 l++ +l lk+g++++++G+nG+GKStL++++ ++       + e+   ++ + e++l  ++ e+ v+  +  + + ++v+ ++ + eie+ l+++g + 
  KKY23562.1 463 LNQTHLRLKRGQRYGLLGPNGSGKSTLMRAINNEQVEgfpRKSEV---KTVFVEHDLDAADTELTVMDWT--VMKLKQVGIEKPKTEIEEKLTEFGFTR 556
                 67889***************************9976433344444...3333334555555555555444..333333455588888999999999666 PP

                 TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  97 lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                    t  +   +sLSgG++ ++alara++++p++lllDEpt+
  KKY23562.1 557 ---TQFEGPITSLSGGWRMKLALARAVFEEPDILLLDEPTN 594
                 ...6664556******************************8 PP

  == domain 2  score: 86.1 bits;  conditional E-value: 8e-27
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE.....................EETTCEGGG........B-HHHCCHCEEEE-SS--S- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxx........xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGei.....................lldgkdlke........qeleslrkeigvlpqepqlf 71 
                  n++++++ g+++a++G+nGaGKStL+++l+g+l pt+Gei                     +ld++++++        ++                  
  KKY23562.1 707 TNITFQVSLGSRIAVIGPNGAGKSTLVNVLTGELIPTSGEIyqheniriayikqhafahidnHLDKTPSEYiqwryqtgED------------------ 787
                 69***************************************7777777776666666666665555555554444433322.................. PP

                 TTSBHHHH........................................................................................... CS
                 xxxxxxxx........................................................................................... RF
    ABC_tran  72 peltvren........................................................................................... 79 
                        +                                                                                           
  KKY23562.1 788 -------Retmdrankqiteddekamekiykiegtqrrvlsvlsrrkfknsyeyeiswslgenvglknerwtpmmtadntwlprseimqshqkmvaevd 879
                 .......12333333344444444555556666778889999999999999999999*********999999999999999999988877777766544 PP

                 ....HHHTC........HHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ....xxxxx........xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ....esdee........iekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpta 137
                                   +++ ++  + +l+++ v++s  + LSgGq+++v+la++ + +p l++lDEpt+
  KKY23562.1 880 qreaL---AsgqfrplvRKEVEAHCAMFGLDAELVSHSRmRGLSGGQRVKVCLAASSWLRPHLIVLDEPTN 947
                 44440...04444444444444444444455555544445******************************8 PP

>> 4HB  Four helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   1.0   1.4e-31   5.3e-29       2      78 .]     352     428 ..     351     428 .. 0.99

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 1.4e-31
         4HB   2 dietvlailkeilkskkkkvaekfepvleYiaAiAgqLiDekeidsaaWvenlkpyvtvivgekeakeivdelRkrA 78 
                 d++tv+ailk+il++k+k++++  ep+++YiaAiAgqLiDeke+d+++W+e++++y+t+ivge++ak ++++lRkrA
  KKY23562.1 352 DLSTVSAILKSILEAKHKNKIDAAEPTINYIAAIAGQLIDEKEVDASSWAEHITAYLTAIVGESDAKPTAETLRKRA 428
                 899*************************************************************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   5.9e-06    0.0022       3      19 ..     477     493 ..     476     517 .. 0.85
   2 !   13.8   0.0    0.0001     0.038     233     298 ..     562     621 ..     533     626 .. 0.79
   3 !   13.0   0.0   0.00018     0.068       3      43 ..     720     754 ..     719     765 .. 0.76
   4 !    9.4   0.0    0.0023      0.84     234     300 ..     916     976 ..     897     979 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.9e-06
      AAA_21   3 vliGpNgsGKSnLLdal 19 
                 +l GpNgsGKS+L++a+
  KKY23562.1 477 GLLGPNGSGKSTLMRAI 493
                 699*************9 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 0.0001
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell..kelsrngaQviltTHS 298
                 p+++lS G +  lal+ a+++ +   ++ll+DEp n+L+ k ++ l + l  + +++     i+++H+
  KKY23562.1 562 PITSLSGGWRMKLALARAVFEEP---DILLLDEPTNHLDVKNVKWLEDYLigSPCTS-----IIVSHD 621
                 77888888888899999999988...9*************99998865555666665.....666665 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 0.00018
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggir 43 
                 ++iGpNg+GKS+L   l       ++++++  e   + +ir
  KKY23562.1 720 AVIGPNGAGKSTLVNVL------TGELIPTSGEIYQHENIR 754
                 79***********9999......666666666666666655 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.0023
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpl 300
                 +r lS G++   +l+++ + ++    l+++DEp n L+   l  l + lk     ++ vi+ +H+ +
  KKY23562.1 916 MRGLSGGQRVKVCLAASSWLRP---HLIVLDEPTNYLDRDSLGALSKALKTF---DGGVIIISHNAE 976
                 5778999999999999999999...79************9999999888777...569******976 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00028       0.1      28      44 ..     477     493 ..     460     495 .. 0.84
   2 !   11.9   0.0   0.00029      0.11      74     205 ..     502     628 ..     493     638 .. 0.70
   3 !   27.4   0.0   5.3e-09     2e-06      27     205 ..     719     981 ..     707     994 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00028
                 EEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAi 44 
                  ++GpNGSGKs l+ Ai
  KKY23562.1 477 GLLGPNGSGKSTLMRAI 493
                 589*************9 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00029
                 TTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEEC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  74 vkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevsellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllD 165
                   k ev+ +f ++d +    ++e++++   + k + ++   g e  k+e++e l + g++++       +LSgG +    + L +A   ++   + llD
  KKY23562.1 502 PRKSEVKTVFVEHDLD--AADTELTVMDWTVMKLK-QV---GIEKPKTEIEEKLTEFGFTRTqfegpitSLSGGWR----MKLALARAVFEEPDILLLD 590
                 5566666666655555..44444444443333333.33...33456788888888888888855555556777755....66777778889999***** PP

                 TTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 166 eidaaLDeknvkkvaellkeksknaQfivislreemleka 205
                 e   +LD knvk + ++l  +   +  i++s+++++l ++
  KKY23562.1 591 EPTNHLDVKNVKWLEDYLIGSP--CTSIIVSHDSKFLDHV 628
                 ******************9887..8899999999988765 PP

  == domain 3  score: 27.4 bits;  conditional E-value: 5.3e-09
                 EEEEESTTSSHHHHHHHHHHHCTT......TTTTTTCHCCCCCC--..BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAilFvLGer.....sakklrseklsdlihk..skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkev 118
                  a++GpNG+GKs l++ +   L  +     + +++r + +++  ++   ++ +++ + +++  ++  ++++++++ + +i+   ++  e  yki+g+  
  KKY23562.1 719 IAVIGPNGAGKSTLVNVLTGELIPTsgeiyQHENIRIAYIKQHAFAhiDNHLDKTPSEYIQWRYQTGEDRETMDRANKQITEDDEKAMEKIYKIEGT-- 815
                 589*************998887554011123345555555554444555666777788899999998888999999999999999999999999885.. PP

                 -HHHHHHHHHCTT-STT.................................................................................. CS
                 xxxxxxxxxxxxxxxxx.................................................................................. RF
       SMC_N 119 tkkevsellesagiske.................................................................................. 135
                  ++ v ++l++ +++ +                                                                                  
  KKY23562.1 816 -QRRVLSVLSRRKFKNSyeyeiswslgenvglknerwtpmmtadntwlprseimqshqkmvaevdqrealasgqfrplvrkeveahcamfgldaelvsh 913
                 .67789999999999999999****************************************************************************** PP

                 ....CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 ....lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205
                      LSgG++  v     +A  +  +  l +lDe    LD     ++++ lk+      +i+is+++e++e  
  KKY23562.1 914 srmrGLSGGQRVKVC----LAASSWLRPHLIVLDEPTNYLDRDSLGALSKALKTFD--GGVIIISHNAEFTESL 981
                 **********96555....455555555699**********************998..99*********99976 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.9e-05     0.011      24      40 ..     478     494 ..     464     521 .. 0.92
   2 !   20.1   0.2   1.9e-06   0.00071      23     118 ..     720     826 ..     705     851 .. 0.65
   3 ?   -0.7   0.2       4.6   1.7e+03     148     182 ..    1013    1046 ..     990    1059 .. 0.58

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.9e-05
      AAA_23  24 ItGpNGaGKTTildAik 40 
                 + GpNG+GK+T+++Ai 
  KKY23562.1 478 LLGPNGSGKSTLMRAIN 494
                 68*************95 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 1.9e-06
      AAA_23  23 lItGpNGaGKTTildAiklaLygetprlsrks...grgfeksdveiese...gkvkayveltfenkdgry.....trsiererelskkkgkttkkakle 110
                 +++GpNGaGK+T+++ ++  L   +++    +      ++++ ++  ++   ++ ++y++ ++++  +r+     +++i+++ e++ +k  ++ +++++
  KKY23562.1 720 AVIGPNGAGKSTLVNVLTGELIPTSGEIYQHEnirIAYIKQHAFAHIDNhldKTPSEYIQWRYQTGEDREtmdraNKQITEDDEKAMEKIYKIEGTQRR 818
                 567************988777654444333323324445555555222244456666677777666665577777777777777777777777777766 PP

      AAA_23 111 lleidele 118
                  l++  ++
  KKY23562.1 819 VLSVLSRR 826
                 66664444 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 4.6
      AAA_23  148 lkdkkerleelekeleeledekkllekleqekeke 182 
                  + d++++ +++ +++e  ++++kl   + ++k k+
  KKY23562.1 1013 KDDEEDKFDAMGNKIEVTKKKAKLTSSEARKK-KK 1046
                  33344455555555555444444444432222.22 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.1e-05    0.0041      16      43 ..     467     494 ..     462     495 .. 0.78
   2 !   15.8   0.1   2.3e-05    0.0086      17      45 ..     711     739 ..     705     748 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.1e-05
      AAA_29  16 tieidlkgatlltGpsGsGKSTllDAiq 43 
                  +++++ + + l Gp+GsGKSTl+ Ai+
  KKY23562.1 467 HLRLKRGQRYGLLGPNGSGKSTLMRAIN 494
                 566664447889************9885 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.3e-05
      AAA_29  17 ieidlkgatlltGpsGsGKSTllDAiqal 45 
                 ++++l + + ++Gp+G+GKSTl+  ++  
  KKY23562.1 711 FQVSLGSRIAVIGPNGAGKSTLVNVLTGE 739
                 5666666899************9666555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0037       1.4      99     123 ..     472     497 ..     432     516 .. 0.82
   2 !   18.3   0.0   4.6e-06    0.0017      89     133 ..     705     750 ..     682     756 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0037
                  T.SEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  99 d.ktsvlvGqSGvGKStLinallpel 123
                    +   l+G+ G GKStL+ a+++e+
   KKY23562.1 472 RgQRYGLLGPNGSGKSTLMRAINNEQ 497
                  4477889***************9985 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 4.6e-06
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S----- CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevsek 133
                  ++++++ +++  + ++++G+ G+GKStL+n+l++el    ge+ ++
   KKY23562.1 705 QITNITFQVSLgSRIAVIGPNGAGKSTLVNVLTGELIPTSGEIYQH 750
                  555566555544778899****************998888888766 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0019       0.7       2      35 ..     476     511 ..     475     552 .. 0.67
   2 !   16.6   0.0   1.7e-05    0.0064       1      24 [.     718     741 ..     718     767 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0019
                 EEEEESTTSSHHHHHHHHHTSTE..EESSSTTSSSS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgeka..ivsdkpgtTrd 35 
                  +++G   +GKStL++a+ +e++     +   +T  
  KKY23562.1 476 YGLLGPNGSGKSTLMRAINNEQVegFPRKSEVKTVF 511
                 5799**************998541133444444444 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.7e-05
                 EEEEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgeka 24 
                 ++a++G   +GKStL+n ltge  
  KKY23562.1 718 RIAVIGPNGAGKSTLVNVLTGELI 741
                 69******************9844 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0    0.0014      0.51       4      43 ..     478     520 ..     475     548 .. 0.76
   2 !   15.9   0.0   3.1e-05     0.012       1      69 [.     718     793 ..     718     805 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0014
      AAA_28   4 itGgestGKTtlleaLaar...gypvvpEaareileeklakge 43 
                 ++G+ ++GK+tl++a++++   g+p   E+ + ++e+ l+   
  KKY23562.1 478 LLGPNGSGKSTLMRAINNEqveGFPRKSEVKTVFVEHDLDAAD 520
                 79***************87577787778888888887774444 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 3.1e-05
      AAA_28   1 kivitGgestGKTtlleaLaar.....gypvvpEaar.eileekl.akgedalpwv.edllafaervleeqleeeaa 69 
                 +i+++G+ ++GK+tl++ L+ +     g  + +E  r  ++++++ a   ++l+++  + ++ +++  e + e+  +
  KKY23562.1 718 RIAVIGPNGAGKSTLVNVLTGEliptsGEIYQHENIRiAYIKQHAfAHIDNHLDKTpSEYIQWRYQTGEDR-ETMDR 793
                 79******************664555555555777772566666644555889988888888888755543.44444 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0       0.3   1.1e+02       4      32 ..     479     509 ..     477     546 .. 0.87
   2 !   20.5   0.0     1e-06   0.00039       1      82 [.     719     808 ..     719     880 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.3
                 EEBTTTTHHHHHHHHHTS--..S---SSS-- CS
   Dynamin_N   4 vGsqSsGKSSvlnaLlgedi..lprgpnptT 32 
                 +G   sGKS+++ a+  e++  +pr++++ T
  KKY23562.1 479 LGPNGSGKSTLMRAINNEQVegFPRKSEVKT 509
                 78899**********9998844566666665 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 1e-06
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEE.......................CCT---CCS...SSEEEE.T-EB--CHHHHHHHHHH CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelql.......................geeeeaseravkeelkek.ekkledfsevreeieke 75 
                 iav+G   +GKS+++n L+ge   p++ ++     + + +                       +                +  ++ e +++ +++i++ 
  KKY23562.1 719 IAVIGPNGAGKSTLVNVLTGEL-IPTSGEIYQHENIRIAYikqhafahidnhldktpseyiqwR---------------YQtGEDRETMDRANKQITED 801
                 89******************99.68898999999999999444444444443333222222220...............22333333333333333333 PP

                 HHHHHTS CS
   Dynamin_N  76 tekiaga 82 
                  ek+ ++
  KKY23562.1 802 DEKAMEK 808
                 3333322 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1       2.7     1e+03      72     107 ..     378     427 ..     354     454 .. 0.56
   2 !    9.2   0.0     0.004       1.5      29      49 ..     478     498 ..     460     585 .. 0.76
   3 !   11.8   0.0   0.00063      0.24      25      88 ..     717     769 ..     705     825 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 2.7
      AAA_16  72 laqalareellrqlldeaesaeleawrekleeala.................a 107
                  ++++ +  +  ql de+e  +++ w+e++++ l+                  
  KKY23562.1 378 TINYI-A-AIAGQLIDEKEV-DASSWAEHITAYLTaivgesdakptaetlrkR 427
                 44555.3.566677777444.77788888888777444433333333333330 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.004
      AAA_16  29 lsGesGvGKsslvrellrale 49 
                 l G+ G+GKs+l+r++ ++  
  KKY23562.1 478 LLGPNGSGKSTLMRAINNEQV 498
                 89************9987444 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00063
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde 88 
                 + + ++G+ G GKs+lv+ l  +l  +     +g+  q+ ++i     + ++++ + ++ ++++
  KKY23562.1 717 SRIAVIGPNGAGKSTLVNVLTGELIPT-----SGEIYQH-ENI----RIAYIKQ-HAFAHIDNH 769
                 4588**************999877776.....4444444.111....1333422.444444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0    0.0005      0.19      10      48 ..     478     515 ..     471     615 .. 0.76
   2 !    9.0   0.0    0.0042       1.6       8      29 ..     719     740 ..     715     781 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0005
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlp 48 
                 + G+ G+GK+tl+r + ++ +e  ++++ ++++vfv+  
  KKY23562.1 478 LLGPNGSGKSTLMRAINNEQVE-GFPRKSEVKTVFVEHD 515
                 56****************9754.4555567777766544 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0042
      AAA_22   8 lvvtGesGtGKTtllrrlleql 29 
                 ++v+G+ G+GK+tl++ l+ +l
  KKY23562.1 719 IAVIGPNGAGKSTLVNVLTGEL 740
                 79************99887665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0024      0.91       3      38 ..     478     517 ..     477     539 .. 0.69
   2 !    9.4   0.0     0.004       1.5       1      29 [.     719     745 ..     719     826 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0024
      AAA_18   3 ltGtpGvGKttlakeLskrlgf.....gvnlrdvakengll 38 
                 l G+ G+GK+tl ++++++  +       +++ v+ e++l 
  KKY23562.1 478 LLGPNGSGKSTLMRAINNEQ-VegfprKSEVKTVFVEHDLD 517
                 78**************7774.33236644455554444444 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.004
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlr 29 
                 I++ G+ G+GK+tl + L  +l     ++
  KKY23562.1 719 IAVIGPNGAGKSTLVNVLTGEL--IPTSG 745
                 89**************996554..22222 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.013       4.8       6      27 ..     478     499 ..     474     521 .. 0.88
   2 !   12.5   0.0   0.00024     0.089       3      51 ..     718     781 ..     716     792 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.013
   PduV-EutP   6 liGkvgsGKttLtqalkgeelk 27 
                 l+G+ gsGK tL++a+++e+++
  KKY23562.1 478 LLGPNGSGKSTLMRAINNEQVE 499
                 89****************9875 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00024
   PduV-EutP   3 killiGkvgsGKttLtqalkg..............eelkYkktqaiefsdeviD.tPGeylenr 51 
                 +i +iG+ g+GK tL + l+g               ++ Y k  a  + d+ +D tP ey++ r
  KKY23562.1 718 RIAVIGPNGAGKSTLVNVLTGeliptsgeiyqhenIRIAYIKQHAFAHIDNHLDkTPSEYIQWR 781
                 899******************999999999999777799*************9989*****987 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0094       3.5      25      50 ..     475     501 ..     468     512 .. 0.81
   2 !   12.1   0.0   0.00042      0.16      23      48 ..     716     741 ..     702     750 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0094
       DUF87  25 HlAilgsTGsGKSntvavLleelle.k 50 
                 + + lg  GsGKS++++ + +e +e +
  KKY23562.1 475 RYGLLGPNGSGKSTLMRAINNEQVEgF 501
                 56899999***********99988762 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00042
       DUF87  23 trHlAilgsTGsGKSntvavLleell 48 
                   ++A++g  G+GKS++v vL  el+
  KKY23562.1 716 GSRIAVIGPNGAGKSTLVNVLTGELI 741
                 6789******************9998 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0       1.4   5.4e+02      81     119 ..     221     259 ..     211     264 .. 0.86
   2 !    9.5   0.0    0.0033       1.2       3      22 ..     478     497 ..     476     592 .. 0.76
   3 ?    7.0   0.0      0.02       7.4       3      23 ..     721     744 ..     719     797 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHH CS
         AAA  81 eeervvnqLlteldgvkkkeskvivigatnrpdkldpal 119
                 + er +++L++ + + ++  ++v ++gat+ + ++ ++ 
  KKY23562.1 221 DIERFIPELIKCIAKPENVPETVHLLGATTFVTDVHEPT 259
                 5678899**********************9977777665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0033
                 EESSTTSSHHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakel 22 
                 l Gp G GK++l++a+ +e 
  KKY23562.1 478 LLGPNGSGKSTLMRAINNEQ 497
                 78***************995 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.02
                 EESSTTSSHHHHHHHHHHHH...T CS
         AAA   3 lyGppGtGKTllakavakel...g 23 
                 ++Gp G GK++l++ +  el   +
  KKY23562.1 721 VIGPNGAGKSTLVNVLTGELiptS 744
                 89**************99975541 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00039      0.14      31      68 ..     478     516 ..     456     525 .. 0.81
   2 ?    6.5   0.0     0.015       5.7      30      46 ..     720     736 ..     706     743 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00039
      AAA_27  31 iyGpNEAGKstalrAis.dllfGipertkdnflhdakkL 68 
                 ++GpN +GKst++rAi+ + + G+p++++ + ++ +++L
  KKY23562.1 478 LLGPNGSGKSTLMRAINnEQVEGFPRKSEVKTVFVEHDL 516
                 47**************72567899999999888887777 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.015
      AAA_27  30 liyGpNEAGKstalrAi 46 
                  ++GpN AGKst+++ +
  KKY23562.1 720 AVIGPNGAGKSTLVNVL 736
                 489*********98765 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0     0.013       4.7       3      25 ..     478     500 ..     477     519 .. 0.76
   2 !   10.6   0.0    0.0015      0.57       2      35 ..     720     748 ..     719     774 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.013
  RNA_helicase   3 lyGpsgeGKStlakeLakallkk 25 
                   l Gp+g GKStl++ + ++  + 
    KKY23562.1 478 LLGPNGSGKSTLMRAINNEQVEG 500
                   57************987765544 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0015
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsvy 35 
                    + Gp+g GKStl++ L+ +l  ++     +++y
    KKY23562.1 720 AVIGPNGAGKSTLVNVLTGELIPTS-----GEIY 748
                   689*************999998444.....3333 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0018      0.69      15      52 ..     459     496 ..     451     505 .. 0.89
   2 !    8.3   0.1    0.0026      0.98      15      54 ..     702     741 ..     691     747 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0018
                 HHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHH CS
        MeaB  15 akellerllakaGraqvvGltGvPGaGkstlvealgle 52 
                 ak ll++   +  r q+ Gl G  G+Gkstl+ a+  e
  KKY23562.1 459 AKILLNQTHLRLKRGQRYGLLGPNGSGKSTLMRAINNE 496
                 788999999999********************998765 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0026
                 HHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHH CS
        MeaB  15 akellerllakaGraqvvGltGvPGaGkstlvealglelr 54 
                 +k  +++++ +     ++ + G  GaGkstlv+ l+ el+
  KKY23562.1 702 SKPQITNITFQVSLGSRIAVIGPNGAGKSTLVNVLTGELI 741
                 55666677777777899******************99987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00081       0.3       5      39 ..     478     512 ..     475     532 .. 0.90
   2 ?    6.3   0.0     0.021         8       2      20 ..     718     736 ..     717     768 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00081
                 EEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEE CS
       NACHT   5 lqGeaGsGKTtLlqklalawaegklpqgafklvFf 39 
                 l G++GsGK+tL++ +  +  eg + + ++k vF+
  KKY23562.1 478 LLGPNGSGKSTLMRAINNEQVEGFPRKSEVKTVFV 512
                 68***************999999999988998886 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.021
                 CEEEEC-TTTCHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqkl 20 
                  +++ G++G GK+tL+  l
  KKY23562.1 718 RIAVIGPNGAGKSTLVNVL 736
                 5899***********9876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.025       9.4       5      19 ..     479     493 ..     478     523 .. 0.87
   2 !    8.9   0.0    0.0043       1.6       3      23 ..     720     740 ..     719     800 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.025
      AAA_33   5 vGlpGsGKstlaerl 19 
                  G++GsGKstl + +
  KKY23562.1 479 LGPNGSGKSTLMRAI 493
                 6**********9875 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0043
      AAA_33   3 llvGlpGsGKstlaerllkkl 23 
                  ++G++G+GKstl+  l  +l
  KKY23562.1 720 AVIGPNGAGKSTLVNVLTGEL 740
                 589**********99887665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0093       3.5       2      22 ..     473     493 ..     472     546 .. 0.82
   2 !    8.3   0.0    0.0046       1.7       3      22 ..     717     736 ..     715     789 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0093
      AAA_24   2 klkiliyGpsgiGKTtlakel 22 
                 ++++ + Gp+g+GK+tl++ +
  KKY23562.1 473 GQRYGLLGPNGSGKSTLMRAI 493
                 67899*************988 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0046
      AAA_24   3 lkiliyGpsgiGKTtlakel 22 
                  +i+++Gp+g+GK+tl++ l
  KKY23562.1 717 SRIAVIGPNGAGKSTLVNVL 736
                 589************99866 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0041       1.5      10      54 ..     460     504 ..     452     551 .. 0.76
   2 !    7.0   0.0    0.0074       2.8      25     104 ..     718     812 ..     700     914 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0041
                 XXXXXXXXXXE..EEEEEEEESTTSSHHHHHHHHHHHCS----HH CS
     G-alpha  10 slkaerkarkkkrevkllllGqseSGKsTilkqlkllykkgfsee 54 
                 ++  +++  + kr  +  llG ++SGKsT+++ +     +gf ++
  KKY23562.1 460 KILLNQTHLRLKRGQRYGLLGPNGSGKSTLMRAINNEQVEGFPRK 504
                 556666666667788899**************9987666666655 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0074
                 EEEEEESTTSSHHHHHHHHH..HHCS--..--HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT....................HHHC-SS-SCCCS-H CS
     G-alpha  25 kllllGqseSGKsTilkqlk..llykkg..fseeelatwraviqlnivrsiktilealesleselsesf.............elqelkerldplkkv 104
                 ++ ++G ++ GKsT+++ l   l+ + g  +++e++++  a+i ++   +i++ l++  s+ ++   +                ++ ++++++++k+
  KKY23562.1 718 RIAVIGPNGAGKSTLVNVLTgeLIPTSGeiYQHENIRI--AYIKQHAFAHIDNHLDKTPSEYIQWRYQTgedretmdrankqITEDDEKAMEKIYKI 812
                 8999***************9876666667788885555..899999999999999999996555522224222222222222233333333333333 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.26        98      62      82 ..     582     602 ..     546     608 .. 0.81
   2 !   11.2   0.0   0.00087      0.33      26      89 ..     912     962 ..     893     963 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.26
     SbcCD_C  62 palrlvfLDEAFsklDeesia 82 
                 + +++++LDE  + lD ++++
  KKY23562.1 582 EEPDILLLDEPTNHLDVKNVK 602
                 45899***********99986 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00087
     SbcCD_C  26 lsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                  ++++++lSGG++   + ++la  ++++++          l++LDE  + lD +s+ +l ++l+
  KKY23562.1 912 SHSRMRGLSGGQR---VKVCLA--ASSWLRP--------HLIVLDEPTNYLDRDSLGALSKALK 962
                 5789999******...667766..6677776........6*****************9999886 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.3    0.0017      0.64       4      40 ..      67     108 ..      64     164 .. 0.65
   2 ?    3.4   0.0      0.27     1e+02      28      74 ..     183     236 ..     178     242 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0017
      HEAT_2   4 LlqalendpdpevrraairaLgrignp.....ealpaLvell 40 
                   ++l+n +d  vr++a++ ++ i+          p+Lvell
  KKY23562.1  67 VKKQLANKKDAVVRQRACEGIAAIAQHssvspAFEPYLVELL 108
                 5688999***************76543223333344444443 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.27
      HEAT_2  28 gnpealpaLvellededpavRraaaeaLgai......gd.pealpaLkellddd 74 
                 + p+++p + e + d++p+v + a  ++ +i      +d ++++p L ++ + +
  KKY23562.1 183 RVPDLIPVVSESMWDTKPEVKKKAYGTMEKIcglivnKDiERFIPELIKCIAKP 236
                 568999**********************99864444434788999999988766 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.016       5.9       6      44 ..     477     517 ..     473     545 .. 0.69
   2 ?    7.2   0.0     0.014       5.1       5      46 ..     719     766 ..     716     811 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.016
      AAA_14   6 vitGaRrvGKTtllkqlikell..vkkesilyinldderdk 44 
                  + G+  +GK+tl++ + +e+    +++s +   + +++++
  KKY23562.1 477 GLLGPNGSGKSTLMRAINNEQVegFPRKSEVKTVFVEHDLD 517
                 588************99998888855554444444444443 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.014
      AAA_14   5 lvitGaRrvGKTtllkqlikell......vkkesilyinldderdkkl 46 
                 +++ G+  +GK+tl++ l  el+       ++e+i    ++++ ++ +
  KKY23562.1 719 IAVIGPNGAGKSTLVNVLTGELIptsgeiYQHENIRIAYIKQHAFAHI 766
                 6799**************999998888865555554444444444433 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0068       2.5      22      40 ..     477     495 ..     466     511 .. 0.83
   2 ?    5.7   0.0      0.03        11      22      39 ..     720     737 ..     705     799 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0068
      AAA_30  22 vltGpAGtGKttalkalre 40 
                  l Gp G+GK+t+++a+++
  KKY23562.1 477 GLLGPNGSGKSTLMRAINN 495
                 578*************954 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.03
      AAA_30  22 vltGpAGtGKttalkalr 39 
                 ++ Gp G+GK+t++++l+
  KKY23562.1 720 AVIGPNGAGKSTLVNVLT 737
                 688***********9994 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.023       8.6       2      17 ..     479     494 ..     478     512 .. 0.89
   2 ?    7.2   0.0     0.011         4       1      17 [.     721     737 ..     721     753 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.023
  ATP_bind_1   2 vGpaGsGKttfvgals 17 
                 +Gp GsGK+t+++a++
  KKY23562.1 479 LGPNGSGKSTLMRAIN 494
                 7***********9987 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.011
  ATP_bind_1   1 vvGpaGsGKttfvgals 17 
                 v+Gp G+GK+t+v+ l+
  KKY23562.1 721 VIGPNGAGKSTLVNVLT 737
                 89***********9875 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1    0.0071       2.6       7      30 ..      69      93 ..      63      94 .. 0.82
   2 ?    3.3   0.0      0.34   1.3e+02       1      28 [.     187     214 ..     187     216 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0071
                HHH.T-SSHHHHHHHHHHHHHHHHC CS
        HEAT  7 kll.sDpspeVReaAakaLgalaev 30
                k l + +++ VR+ A++ ++a+a++
  KKY23562.1 69 KQLaNKKDAVVRQRACEGIAAIAQH 93
                5554779999*************98 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.34
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 l+P++ + + D+ peV + A  ++ +++
  KKY23562.1 187 LIPVVSESMWDTKPEVKKKAYGTMEKIC 214
                 79*****************998888877 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0     0.001      0.37      24      49 ..     477     500 ..     465     551 .. 0.81
   2 ?    2.4   0.0       0.2        76      23      39 ..     719     735 ..     708     828 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
                 EEEESTTSSHHHHHHHHCCSHCCCCC CS
      NB-ARC  24 alvGmgGvGKttlakqilnksdeveg 49 
                 +l G  G+GK+tl++ i+n+  +veg
  KKY23562.1 477 GLLGPNGSGKSTLMRAINNE--QVEG 500
                 689****************9..5554 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.2
                 EEEEESTTSSHHHHHHH CS
      NB-ARC  23 valvGmgGvGKttlakq 39 
                 +a+ G  G GK+tl++ 
  KKY23562.1 719 IAVIGPNGAGKSTLVNV 735
                 7999**********875 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       3.2   1.2e+03      25      48 ..     278     301 ..     266     368 .. 0.70
   2 ?    5.4   0.0     0.033        12       4      22 ..     477     495 ..     475     524 .. 0.87
   3 ?    5.4   0.0     0.033        12       4      21 ..     720     737 ..     717     777 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 3.2
                 -SS-EEEEESS-SSCHCCCCCCHC CS
        cobW  25 aglklavivNefgevsiDaellre 48 
                  ++k aviv ++ ++ +D +++++
  KKY23562.1 278 IKRKSAVIVDNMCKLVEDPQIVAS 301
                 468899999999999999999843 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.033
                 EEEESTTCCHHHHHHHHHC CS
        cobW   4 vltGflGsGKTtLlnhlle 22 
                 +l G+ GsGK+tL++++ +
  KKY23562.1 477 GLLGPNGSGKSTLMRAINN 495
                 5789**********99864 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.033
                 EEEESTTCCHHHHHHHHH CS
        cobW   4 vltGflGsGKTtLlnhll 21 
                  + G+ G+GK+tL+n l+
  KKY23562.1 720 AVIGPNGAGKSTLVNVLT 737
                 6889**********9887 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0     0.002      0.75      28      48 ..     478     495 ..     476     559 .. 0.64
   2 ?   -1.0   0.0       2.9   1.1e+03     288     336 ..     557     596 ..     512     610 .. 0.64
   3 !    9.3   0.2    0.0022      0.84      19      44 ..     713     737 ..     708     839 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.002
      AAA_15  28 liGkNnsGKSsilealdlFln 48 
                 l G+N+sGKS++++a+    n
  KKY23562.1 478 LLGPNGSGKSTLMRAI---NN 495
                 56**************...33 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.9
      AAA_15 288 ddeelplnknGsGvqrllllillileaekkdekeeknvilliEEPEahL 336
                 +++e p++  + G +  + l+l ++ +e+        +ill++EP +hL
  KKY23562.1 557 TQFEGPITSLSGGWR--MKLALARAVFEEP-------DILLLDEPTNHL 596
                 677777777777765..4555666666666.......99******9998 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0022
      AAA_15  19 idlseeltvliGkNnsGKSsileald 44 
                 ++l +    +iG+N++GKS+++++l 
  KKY23562.1 713 VSLGS-RIAVIGPNGAGKSTLVNVLT 737
                 56666.6789*************993 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       2.9   1.1e+03      72      95 ..      37      60 ..      35      93 .. 0.85
   2 ?    5.1   0.0     0.055        21       4      19 ..     478     493 ..     477     520 .. 0.87
   3 ?    4.9   0.0     0.065        24       4      31 ..     721     749 ..     718     785 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 2.9
                ESGGG--HHHHHHHHHHHHSSEEE CS
       AAA_5 72 DEveraesevlnsLlslleerrll 95
                DE + a s+v++ L+ ++ee  ++
  KKY23562.1 37 DEANAAASNVASLLNGPIEEHVVP 60
                999****************98776 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.055
                 EE--SSSSHHHHHHHG CS
       AAA_5   4 LvGppGtgKselaerl 19 
                 L+Gp G+gKs+l++ +
  KKY23562.1 478 LLGPNGSGKSTLMRAI 493
                 89**********9987 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.065
                 EE--SSSSHHHHHHHGGGGB.S--EEEEE CS
       AAA_5   4 LvGppGtgKselaerlaaal.nreveyvq 31 
                 ++Gp G gKs+l+  l   l  ++ e++q
  KKY23562.1 721 VIGPNGAGKSTLVNVLTGELiPTSGEIYQ 749
                 79***********9998766566655555 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0     0.002      0.75       1      32 [.     480     516 ..     480     526 .. 0.78
   2 ?    2.7   0.0      0.26        97       1      19 [.     723     741 ..     723     747 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.002
      CLP1_P   1 GpkdsGKSTlarlLlNyal.....rkgrkpvyvDlDv 32 
                 Gp+ sGKSTl+r + N+ +     +++ k+v+v+ D+
  KKY23562.1 480 GPNGSGKSTLMRAINNEQVegfprKSEVKTVFVEHDL 516
                 899***************9777633445888997775 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.26
      CLP1_P   1 GpkdsGKSTlarlLlNyal 19 
                 Gp+ +GKSTl+ +L  +++
  KKY23562.1 723 GPNGAGKSTLVNVLTGELI 741
                 899***********99876 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0061       2.3      77     140 ..     467     531 ..     464     563 .. 0.69
   2 ?    4.7   0.0      0.06        22      30      53 ..     720     743 ..     710     754 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0061
                 GGGB-SSEEEEEEEEE-TTS-EEEEEEEEEE-SSTTT-EEEEE.EEEES--TT--HHHHHEE--S CS
        MukB  77 yGklkaGvcysvlevvnsreqrllvgvrleqvagrdkkvdikp.falqgleedvkltdvllekld 140
                 + +lk+G+ y +l    s +  l+ +++ eqv g  +k ++k+ f+ ++l+   +   v+  ++ 
  KKY23562.1 467 HLRLKRGQRYGLLGPNGSGKSTLMRAINNEQVEGFPRKSEVKTvFVEHDLDAADTELTVMDWTVM 531
                 5689**********************************999872555567655544444433333 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.06
                 HHHS--SHHHHHHHHHHHHHHS-- CS
        MukB  30 tlsGgnGaGksttmaafvtaliPd 53 
                 ++ G nGaGkst +  +   liP 
  KKY23562.1 720 AVIGPNGAGKSTLVNVLTGELIPT 743
                 56799*********9999999996 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0      0.03        11       4      27 ..     478     501 ..     475     532 .. 0.74
   2 ?    6.5   0.0     0.026       9.5       1      22 [.     718     739 ..     718     773 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.03
                 EESSTTSSHHHHHHCHCT-CCC-E CS
         Roc   4 lvGdsgvGKtsllkrfvedkfsek 27 
                 l+G +g+GK++l++ + +++++  
  KKY23562.1 478 LLGPNGSGKSTLMRAINNEQVEGF 501
                 89*************999998743 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.026
                 EEEEESSTTSSHHHHHHCHCT- CS
         Roc   1 KvvlvGdsgvGKtsllkrfved 22 
                 ++ ++G +g+GK++l++ ++ +
  KKY23562.1 718 RIAVIGPNGAGKSTLVNVLTGE 739
                 5899************988754 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.035        13      46      73 ..     472     499 ..     462     520 .. 0.85
   2 ?    5.4   0.0     0.037        14      48      73 ..     717     742 ..     683     771 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.035
   IstB_IS21  46 kkenivllGpsGvGKshlaialgveavr 73 
                 + +   llGp G GKs l  a+  e v+
  KKY23562.1 472 RGQRYGLLGPNGSGKSTLMRAINNEQVE 499
                 5666779***************998876 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.037
   IstB_IS21  48 enivllGpsGvGKshlaialgveavr 73 
                   i+++Gp G+GKs l   l  e + 
  KKY23562.1 717 SRIAVIGPNGAGKSTLVNVLTGELIP 742
                 5799***********99888877665 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.068        25       5      20 ..     480     495 ..     477     501 .. 0.88
   2 ?    6.7   0.0     0.014       5.3       1      33 [.     719     748 ..     719     812 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.068
                     -STTSSHHHHHHHHHH CS
  Cytidylate_kin   5 GPagsGKssvaralae 20 
                     GP gsGKs++ ra+ +
      KKY23562.1 480 GPNGSGKSTLMRAINN 495
                     9***********9876 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.014
                     EEEE-STTSSHHHHHHHHHHHHT-EEEEHHHHH CS
  Cytidylate_kin   1 iaiDGPagsGKssvaralaeklglkyldtgalY 33 
                     ia+ GP g+GKs++   l+ +l      +g++Y
      KKY23562.1 719 IAVIGPNGAGKSTLVNVLTGELI---PTSGEIY 748
                     8999***********99988773...3455555 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0099       3.7      25      44 ..     478     497 ..     466     551 .. 0.83
   2 ?    3.6   0.1      0.14        52      24      46 ..     720     742 ..     715     826 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0099
    ATPase_2  25 iYGpegsGKtaLlkeiienl 44 
                 + Gp gsGK++L++ i +++
  KKY23562.1 478 LLGPNGSGKSTLMRAINNEQ 497
                 57***********9987765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.14
    ATPase_2  24 fiYGpegsGKtaLlkeiienled 46 
                  + Gp g GK++L++ +  +l  
  KKY23562.1 720 AVIGPNGAGKSTLVNVLTGELIP 742
                 477***********988777633 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.25        92      49      71 ..     477     499 ..     459     524 .. 0.79
   2 ?    8.5   0.0    0.0047       1.8      50      89 ..     721     760 ..     710     808 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.25
       Rad17  49 LisGPsGCgkstvvkvLskelgi 71 
                  + GP G gkst ++ +  e + 
  KKY23562.1 477 GLLGPNGSGKSTLMRAINNEQVE 499
                 467***********999888765 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0047
       Rad17  50 isGPsGCgkstvvkvLskelgiklrewlnpvslkepdnqk 89 
                 + GP G gkst v+vL+ el +   e     +++ +  ++
  KKY23562.1 721 VIGPNGAGKSTLVNVLTGELIPTSGEIYQHENIRIAYIKQ 760
                 67*****************998877776666666555555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.031        11      30      56 ..     470     496 ..     462     535 .. 0.78
   2 ?    4.9   0.0     0.044        16      31      57 ..     714     740 ..     706     773 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.031
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkk 56 
                 lk+++   l Gp G+GK+++++ + ++
  KKY23562.1 470 LKRGQRYGLLGPNGSGKSTLMRAINNE 496
                 677888889***********9986655 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.044
       AAA_7  31 knkkpvllvGptGtGKtviikdllkkl 57 
                 + +  + ++Gp G GK+++++ l+ +l
  KKY23562.1 714 SLGSRIAVIGPNGAGKSTLVNVLTGEL 740
                 55678899************9877665 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.027        10      58      78 ..     478     498 ..     459     515 .. 0.82
   2 ?    4.2   0.0     0.054        20      56      94 ..     719     765 ..     703     780 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.027
      DUF815  58 LwGarGtGKSslvkallneya 78 
                 L G  G+GKS+l++a+ ne  
  KKY23562.1 478 LLGPNGSGKSTLMRAINNEQV 498
                 89**************99865 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.054
      DUF815  56 vLLwGarGtGKSslvkallneyaeeg........Lrlievekedlke 94 
                 + ++G  G+GKS+lv  l+ e+  ++        +r+  ++++  ++
  KKY23562.1 719 IAVIGPNGAGKSTLVNVLTGELIPTSgeiyqhenIRIAYIKQHAFAH 765
                 66789************998876555444444446666665554444 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.29   1.1e+02      27      43 ..     478     494 ..     473     500 .. 0.89
   2 ?    6.8   0.0      0.01       3.9      24      65 ..     718     760 ..     707     775 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.29
  Mg_chelatase  27 lvGppGsGKtmlakrlp 43 
                   l+Gp GsGK+ l ++++
    KKY23562.1 478 LLGPNGSGKSTLMRAIN 494
                   78**********99875 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.01
  Mg_chelatase  24 nlllvGppGsGKtmlakrlps.llpplseeealevakiasvag 65 
                    + ++Gp G+GK+ l + l++ l+p   e  ++e  +ia +++
    KKY23562.1 718 RIAVIGPNGAGKSTLVNVLTGeLIPTSGEIYQHENIRIAYIKQ 760
                   57789**************973666655555566665555544 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.016       5.9       3      66 ..     477     541 ..     476     558 .. 0.75
   2 ?    3.3   0.0      0.16        60       2      43 ..     719     768 ..     718     811 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.016
         PRK   3 gvagsSGaGkttvarklek.ifgrekvkaaeiegdsflrldraekdleleerkrakekevsflsp 66 
                 g+ g+ G+Gk+t++r++++  +++   k+ + +  +++ ld a+ +l++ +    k k+v   +p
  KKY23562.1 477 GLLGPNGSGKSTLMRAINNeQVEGFPRKSEVKTVFVEHDLDAADTELTVMDWTVMKLKQVGIEKP 541
                 678999***********862455566666666888888899888888887776666666655555 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.16
         PRK   2 IgvagsSGaGkttvarkle........kifgrekvkaaeiegdsflrldr 43 
                 I+v g+ GaGk+t+ + l+        +i ++e+++ a+i+  +f  +d+
  KKY23562.1 719 IAVIGPNGAGKSTLVNVLTgeliptsgEIYQHENIRIAYIKQHAFAHIDN 768
                 89***********9998872222222233444444444445555555554 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0       0.2        74     136     152 ..     480     496 ..     456     536 .. 0.83
   2 ?    6.7   0.0    0.0085       3.2     126     161 ..     713     748 ..     681     773 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.2
       T2SSE 136 GgTgsGKttllyallke 152
                 G+ gsGK+tl+ a+ +e
  KKY23562.1 480 GPNGSGKSTLMRAINNE 496
                 9*********9887655 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0085
       T2SSE 126 vrerglilvsGgTgsGKttllyallkeinksderiv 161
                 v+    i v G+ g GK+tl+++l  e+  ++ +i 
  KKY23562.1 713 VSLGSRIAVIGPNGAGKSTLVNVLTGELIPTSGEIY 748
                 4566678999**************998866656665 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.45   1.7e+02      97     134 ..     291     332 ..     283     414 .. 0.81
   2 ?    0.4   0.0      0.94   3.5e+02      45      58 ..     479     492 ..     462     493 .. 0.91
   3 ?    6.0   0.1     0.018       6.7      34      60 ..     711     737 ..     694     744 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.45
                   S-B-SHHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHH....H CS
  FtsK_SpoIIIE  97 avatdperalraleeLvkemeeryalfreagvrsiaa....y 134
                   + ++dp+ ++++l +L+ ++++ ++ +++  +r+ ++     
    KKY23562.1 291 KLVEDPQIVASFLPKLMPALQKNFETMADPEAREKTKqgldT 332
                   6899***********************999999877654440 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.94
                   E--TTSSHHHHHHH CS
  FtsK_SpoIIIE  45 aGatgsGKStalnt 58 
                   +G  gsGKSt +++
    KKY23562.1 479 LGPNGSGKSTLMRA 492
                   7999******9987 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.018
                   EGGGS-.SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  34 dlkkmashllvaGatgsGKStalntLi 60 
                   ++++  s + v+G  g GKSt +n+L 
    KKY23562.1 711 FQVSLGSRIAVIGPNGAGKSTLVNVLT 737
                   5555557899**************995 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.027        10      12      38 ..     471     497 ..     466     553 .. 0.89
   2 ?    3.1   0.0      0.18        66       8      37 ..     710     739 ..     704     821 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.027
                  BTT-EEEEEESTTSSHHHHHHHHHHHS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  12 vqGqrtlipgafgvGktvisqslskqs 38 
                   +Gqr +++g +g Gk+++++++ +++
   KKY23562.1 471 KRGQRYGLLGPNGSGKSTLMRAINNEQ 497
                  69*******************999874 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.18
                  HS-EBTT-EEEEEESTTSSHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   8 lfpivqGqrtlipgafgvGktvisqslskq 37 
                   f +  G r++++g +g Gk+++++ l+ +
   KKY23562.1 710 TFQVSLGSRIAVIGPNGAGKSTLVNVLTGE 739
                  567788****************99877654 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.72   2.7e+02       4      32 ..     477     503 ..     474     529 .. 0.71
   2 ?    7.7   0.1    0.0063       2.4       2      23 ..     718     739 ..     717     743 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.72
                 EEEESTTSSHHHHHHHHHTTSEEEEESTT CS
      FeoB_N   4 alvGnpnvGkttlfnaltgakqkvgNwpG 32 
                  l+G   +Gk+tl+ a+ +  ++v  +p 
  KKY23562.1 477 GLLGPNGSGKSTLMRAINN--EQVEGFPR 503
                 5889999********9975..45556665 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0063
                 EEEEEESTTSSHHHHHHHHHTT CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltga 23 
                 ++a++G   +Gk+tl+n ltg 
  KKY23562.1 718 RIAVIGPNGAGKSTLVNVLTGE 739
                 699*****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1064 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1276  (0.0711696); expected 358.6 (0.02)
Passed bias filter:                      741  (0.0413297); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                        49  (0.002733); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              48  [number of targets reported over threshold]
# CPU time: 1.07u 0.43s 00:00:01.50 Elapsed: 00:00:00.56
# Mc/sec: 5761.46
//
Query:       KKY23563.1  [L=299]
Description: putative mitochondrial precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-77  260.5   0.0    2.4e-77  260.2   0.0    1.0  1  Arginase  Arginase family
     0.0053   17.0   0.1     0.0085   16.3   0.1    1.3  1  UPF0489   UPF0489 domain


Domain annotation for each model (and alignments):
>> Arginase  Arginase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.2   0.0   2.6e-81   2.4e-77      47     279 ..       5     256 ..       1     257 [. 0.96

  Alignments for each domain:
  == domain 1  score: 260.2 bits;  conditional E-value: 2.6e-81
                 SCCSEEEEEEEEE--SSCHHHHHHHHHHHHHHHHHT.......TCEEEEEESSGGGHHHHHHHHHHHHSTTEEEEEESSS----SSC...........T CS
    Arginase  47 leelkivdlgdvavtpvdneevleqieeavaeilka.......gklpivlGGDHsialgilralaekygkplgvihfDAHaDlrtpe...........t 127
                 ++++++ d+gd++vtp+dne +l+q++ a++e+l++       + + i+lGGDHsial++lral + y++p++v+hfDAH+D+++p             
  KKY23563.1   5 QSWATVLDCGDIPVTPFDNELALRQMTLAYEELLSRpstdptqKPILIALGGDHSIALPALRALEKTYKQPIAVLHFDAHLDTWHPGkypsawlptdsA 103
                 46999******************************999999989999***************************************9999999999987 PP

                 TTBSSSTTSHHHHHHHHTSECGCEEEEEEE-STCSH....HHHHHHHTTSEEEEHHHHHHHHHHHHHHHHHHHHTCTTSEEEEEEEGGGBBTTTSTSSS CS
    Arginase 128 egsgnshGtpfrraaeegllkpkklvqiGirsvdne....eyelakelgirvitmreidelglkavveeilervgaeedpvylSfDiDvlDpavaPGtG 222
                 ++s ++hGt+f+ a++egl+ + ++v+ G+r++ ++    +y ++ ++g+  i++++ide+g++ +++ i++r+g +e pvylS+DiDv+Dp +aPGtG
  KKY23563.1 104 SQSYFTHGTMFWIASDEGLILNGSSVHGGLRTRLSGhdygDYADDSQQGFLQIEADDIDEIGVQGIIDTIMQRMG-REVPVYLSVDIDVIDPGLAPGTG 201
                 8899*******************************999999999999***************************8.779******************** PP

                 S-BSS-B-HHHHHHHHHHHHCHSEEEEEEEE-B-GGGSSTTTHHHHHHHHHHHHHHH CS
    Arginase 223 tpepgGltlrellallrelaeklnlvgaDvvEvnPaldteaeqtarlaarlvrelll 279
                 tpepgG+t+rel+++lr++++ ln+vgaDvvEv+Pa+d ++eqta+++a++v+e +l
  KKY23563.1 202 TPEPGGWTTRELIKILRGVED-LNIVGADVVEVSPAFDGRGEQTALAGAQVVYE-ML 256
                 *******************99.********************************.45 PP

>> UPF0489  UPF0489 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   9.5e-07    0.0085       6      44 ..      57      93 ..      55     120 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 9.5e-07
     UPF0489  6 sHheaLeaiyraigskklpsdlslvHlDaHpDllipkkm 44
                +H  aL+a +   +++  ++++ ++H+DaH D+  p k 
  KKY23563.1 57 DHSIALPALRAL-EKT-YKQPIAVLHFDAHLDTWHPGKY 93
                577777777555.444.47**************999743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1943.54
//
Query:       KKY23564.1  [L=383]
Description: putative beta-ketoacyl synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-47  161.4   2.2    7.8e-47  160.0   0.2    2.0  2  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
      1e-29  102.9   1.0    1.5e-28   99.2   1.2    2.2  2  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    3.2e-06   26.7   0.4    7.5e-06   25.5   0.2    1.6  2  Thiolase_N       Thiolase, N-terminal domain
     0.0016   18.1   4.5      0.025   14.2   0.1    3.8  2  Thiolase_C       Thiolase, C-terminal domain


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0   0.2   1.7e-50   7.8e-47      68     253 .]      67     259 ..      49     259 .. 0.83
   2 ?    1.0   0.1     0.059   2.6e+02      92     170 ..     292     370 ..     285     375 .. 0.72

  Alignments for each domain:
  == domain 1  score: 160.0 bits;  conditional E-value: 1.7e-50
                    TEGGTTSTHHHHHHHCTS-HHHHHHHHHHHHHHHHHTS-HHTCTTGG.EEEEEEESST....HHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHH CS
  ketoacyl-synt  68 ddfdpeffgispreaeamdpqqrllleaawealedagltpeeldgsr.vgvfiGvgag....dyaalaaldedgsevkaspkavgavlanviagri 158
                     d+ + + + ++r   +m++++++ + a+++al dag++p+e  + + +gv++G+g+g     y++ +a ++ g ++k+sp +v+++l n  ag++
     KKY23564.1  67 WDVSKWLTKTEER---QMSRFAHYGIAATEQALMDAGWKPTEEADLEaTGVCLGSGIGnleeMYNTSNAFENSG-YKKVSPLFVPKLLINLGAGHV 158
                    4555555566666...************************99855556**********6543334444444344.9******************** PP

                    HHHHT--SSEEEEESGGGHH.HHHHHHHHHHHHTTS-SEEEEEEEE---SHHHHHHHHHTT.BB-TT..SGGGTTBTTB...-SB-BB-EEEEEEE CS
  ketoacyl-synt 159 syalglrGpsvtvdtACsSs.lvavhaavqslrsgeadvalaGGvellltpeavagfsaag.llspd..grckafdpka...dGfvlGEGvGavvL 247
                    s+++g+rGp+++v+tAC+++ + +++a  + +  g+adv++aGG+e +++p a+agf++ + l ++    ++ a++p++   +Gf++GEG++++vL
     KKY23564.1 159 SMKYGFRGPNHAVTTACTTGaHSIGDAS-RFIACGDADVMVAGGAESCIHPLAIAGFARSRsLATAFndTPELASRPFDedrQGFIMGEGAAVLVL 253
                    ********************77777777.********************************766665667777777777777************** PP

                    EECHHH CS
  ketoacyl-synt 248 krleda 253
                    ++le+a
     KKY23564.1 254 EELEHA 259
                    ***987 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.059
                    HHHHHHHHHHHHTS-HHTC...TTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEE CS
  ketoacyl-synt  92 lleaawealedagltpeel...dgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvt 170
                    +l a+++al+++   p+++   +  ++   iG +a++ a  +++ e+g++ k +p+    v+ + + g i + lg+ G++ +
     KKY23564.1 292 ALSAMKRALKQSSTRPRDVdyiNAHATSTPIGDAAENAAISTLMLEAGEDGKKYPEE---VNVSSTKGAIGHLLGAAGAVEA 370
                    688999999999999999954444448888888888554444444555567777733...3568888999999999998755 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.086   3.9e+02      28      75 ..      90     139 ..      70     156 .. 0.80
   2 !   99.2   1.2   3.3e-32   1.5e-28       1     108 [.     267     379 ..     267     381 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.086
                      HHHHHHHHHHT--GGGEEEEE-SS-..SSHHHHHHHHHHHHHHHGGGGGS CS
  Ketoacyl-synt_C  28 raiekalaeagvdpedvdyveahgt..gtplgDpiElealkkvfgekark 75 
                      +a e+al +ag +p++   +ea g   g+ +g   E+   +++f+++++k
       KKY23564.1  90 AATEQALMDAGWKPTEEADLEATGVclGSGIGNLEEMYNTSNAFENSGYK 139
                      56899*********999999999954488999999999999999988773 PP

  == domain 2  score: 99.2 bits;  conditional E-value: 3.3e-32
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.....SCTSEEE-THHHH-B CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.....kqplavgSvKsniGH 89 
                      ya++ g++++ d++h++++  +g+++  a+++al+++ ++p+dvdy++ah+t+tp+gD++E +a+++++ e ++      +++ v+S+K  iGH
       KKY23564.1 267 YAELIGYGCSADAHHMTAPLSSGSGALSAMKRALKQSSTRPRDVDYINAHATSTPIGDAAENAAISTLMLEAGEdgkkyPEEVNVSSTKGAIGH 360
                      89******************************************************************99988888889779************ PP

                      -GGGHHHHHHHHHHHHHHH CS
  Ketoacyl-synt_C  90 leaAaGvaelikvvlalkh 108
                      l++AaG++e++ +vla+k+
       KKY23564.1 361 LLGAAGAVEALFTVLAIKE 379
                      ****************986 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.2   1.7e-09   7.5e-06      75     114 ..     165     204 ..     154     218 .. 0.89
   2 ?   -2.7   0.0      0.68     3e+03      30      49 ..     295     314 ..     292     339 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.7e-09
                 TSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEE CS
  Thiolase_N  75 evpavtvnkvcsSglkavalaaqsiaageadvvvagGvEs 114
                   p ++v+ +c  g++++ +a + ia+g+adv+vagG+Es
  KKY23564.1 165 RGPNHAVTTACTTGAHSIGDASRFIACGDADVMVAGGAES 204
                 56889**********************************8 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.68
                 HHHHHHHHHTS-GGGCCEEE CS
  Thiolase_N  30 alkallekagvdpeevdevi 49 
                 a+k++l++ +  p +vd++ 
  KKY23564.1 295 AMKRALKQSSTRPRDVDYIN 314
                 78889999999999998875 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   1.3     0.034   1.5e+02      67      87 ..     194     214 ..      78     229 .. 0.81
   2 !   14.2   0.1   5.6e-06     0.025      21      98 ..     289     378 ..     275     383 .] 0.70

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.034
                 GGBSTT--HHHH-B-TTTHHH CS
  Thiolase_C  67 ekvNvnGGaialGHPlGasGa 87 
                   v v GGa +  HPl ++G 
  KKY23564.1 194 ADVMVAGGAESCIHPLAIAGF 214
                 456788888888888888874 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 5.6e-06
                 GGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--G.............GGBSTT--HHHH-B-TTTHHHHHHHHHHHHHH CS
  Thiolase_C  21 glgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldl.............ekvNvnGGaialGHPlGasGaRivvtllselk 98 
                 g g   a+k++lk+   + +d+d++ ++   +  +  +a++  + +             e vNv     a+GH lGa+Ga  +   + ++k
  KKY23564.1 289 GSGALSAMKRALKQSSTRPRDVDYINAHATSTP-IGDAAENAAISTlmleagedgkkypEEVNVSSTKGAIGHLLGAAGAVEALFTVLAIK 378
                 566778999999999999999999988744333.2222333333333455566666666********************976665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.50
# Mc/sec: 2326.14
//
Query:       KKY23565.1  [L=673]
Description: putative swi-snf complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-64  215.7   0.5    9.7e-63  212.1   0.5    2.2  1  SNF5      SNF5 / SMARCB1 / INI1


Domain annotation for each model (and alignments):
>> SNF5  SNF5 / SMARCB1 / INI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.1   0.5   5.4e-67   9.7e-63       1     237 []     221     447 ..     221     447 .. 0.90

  Alignments for each domain:
  == domain 1  score: 212.1 bits;  conditional E-value: 5.4e-67
        SNF5   1 qaekpetLvPiridldidkyrlrDtFlwNlhetlitpeqFaqtlveDldlpeea..avveeiskqireqleeyagvalhelasekkesatpaekkesee 97 
                 qae++e+L+Pir+d+++dk++lrDtF+wNlh++++  + Fa++lveD++l+ ++   +v++i+++i+eq+ +y      ++ +               e
  KKY23565.1 221 QAEQSEELIPIRLDIEWDKVKLRDTFTWNLHDRITPYQYFAEKLVEDFSLELDKcrPLVQQIAHSIEEQVADY----YPHIYM---------------E 300
                 89***********************************************99777789****************....222211...............1 PP

        SNF5  98 dtpkakiseeeekeeke.nkddelRvlikldiqigsklltDkfEWdllsplntpEeFAkqlcadlgLsgefvtaiaHaIrEqvlkykksllesgllvag 195
                 ++p  +      + +++ +k+de+Rvlikl i++g+++l+D+fEW++++p n+pE FA+q+++dl+L+gef taiaH+IrEq++ +++sl+        
  KKY23565.1 301 EEPLDP------HLPYSaYKNDEMRVLIKLHITVGQHTLVDQFEWEINNPWNSPEDFAEQMTKDLSLAGEFNTAIAHSIREQCQLFTRSLY-------- 385
                 122222......24445599***********************************************************************........ PP

        SNF5 196 lkkleagwrfd........................eelaeefepkleelskeelekrekerereir 237
                     ++g++fd                         ++a++f+p+l+el++++lek+e + +r++r
  KKY23565.1 386 ----LTGHPFDgrpvedgdiqdnflpspapssfrpYQAAKDFTPYLYELNENDLEKTELSISRAQR 447
                 ....8888888888888888889999999999997668*************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.35s 00:00:01.06 Elapsed: 00:00:00.53
# Mc/sec: 3790.80
//
Query:       KKY23566.1  [L=990]
Description: putative ddt domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-30  103.7   0.0    2.4e-29  101.8   0.0    2.1  1  WAC_Acf1_DNA_bd  ATP-utilising chromatin assembly and remodel
    6.2e-21   74.7   3.3    1.6e-20   73.4   0.2    2.8  2  WSD              Williams-Beuren syndrome DDT (WSD), D-TOX E 
    2.1e-16   60.0   0.3    3.8e-16   59.1   0.3    1.5  1  DDT              DDT domain
      5e-07   29.1   0.0    1.1e-06   28.0   0.0    1.6  1  WHIM1            WSTF, HB1, Itc1p, MBD9 motif 1
     0.0047   17.3   0.0      0.012   16.0   0.0    1.6  1  DUF5097          Domain of unknown function (DUF5097)


Domain annotation for each model (and alignments):
>> WAC_Acf1_DNA_bd  ATP-utilising chromatin assembly and remodelling N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.8   0.0   6.8e-33   2.4e-29      19     101 .]      29     111 ..      26     111 .. 0.98

  Alignments for each domain:
  == domain 1  score: 101.8 bits;  conditional E-value: 6.8e-33
  WAC_Acf1_DNA_bd  19 lerldlykqkvftceitgksnltyfeAlesEkeaskeleekfpealkkpvlelvqfstrsrlddLvedvyeelkerffvgEeV 101
                      ++r+d+ykqk+f ceitg+s+lt+f+Al+sE++ ske++++fpe+lk+pvl+ vqfst+sr+d+Lv++vy+ +k +f++gE V
       KKY23566.1  29 FRRIDFYKQKKFICEITGHSGLTFFDALKSETNGSKEVDSAFPEPLKAPVLRRVQFSTTSRIDHLVDEVYDAFKADFYPGEIV 111
                      78*******************************************************************************87 PP

>> WSD  Williams-Beuren syndrome DDT (WSD), D-TOX E motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.4      0.22   7.9e+02      43      75 ..     699     738 ..     614     745 .. 0.68
   2 !   73.4   0.2   4.5e-24   1.6e-20       2      99 .]     765     891 ..     764     891 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.22
         WSD  43 e.......ekesekrreeeeeeevleegewavysskeqle 75 
                 +       ++++e++r+++eee   ++g+ +++++ ++++
  KKY23566.1 699 DreaerkrKRDEEEERKKREEEAKRSKGSKEYLKTLKKID 738
                 0333333222222222444445555556666666666655 PP

  == domain 2  score: 73.4 bits;  conditional E-value: 4.5e-24
         WSD   2 rlkpLGkDRfyrrYwlfd..................kgtgrlfveepsegdievllekre...........ekesekrr.eeeeeeevleegewavyss 70 
                 r++ LGkDRf++rY++f+                  + +gr++v++p++ + e   +  +             + ++r+  ee+++++    +w +y++
  KKY23566.1 765 RTRVLGKDRFCNRYYWFErnamspegnsdsstadaeYANGRVWVQGPDDLEREGFIDVPKdleqeylrvfgM-TPKERKqLEEGPTSIFTAHQWGFYED 862
                 7889********************************************987775544444599*******64.555555599***************** PP

         WSD  71 keqleeLiesLnprgvREsaLkealekek 99 
                 +e +++Li++L++rg RE +L ++l+++k
  KKY23566.1 863 PESIDKLIDWLDSRGNRELKLSKELQSQK 891
                 *************************9875 PP

>> DDT  DDT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.3   1.1e-19   3.8e-16       1      59 [.     385     443 ..     385     444 .. 0.96

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 1.1e-19
         DDT   1 edfgdlLmvweFLhvFgelLgLspftlddlesALlsqdpmgpseLlaeihiaLLkallr 59 
                 e++g lL++w++L+v++++ +L++ft+dd+++A+ +++ + ++eL++eih+++Lk+l++
  KKY23566.1 385 ESMGPLLETWNTLNVYSQVYQLDSFTFDDFVEAMRYSSSEVECELFVEIHCGVLKLLVK 443
                 57899*********************************9999**************997 PP

>> WHIM1  WSTF, HB1, Itc1p, MBD9 motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   3.1e-10   1.1e-06       4      46 .]     577     619 ..     575     619 .. 0.97

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 3.1e-10
                 -GGG-CCCCCSTCCCS-HHHHHHHHHHHHHHHCCC-CCHHHHH CS
       WHIM1   4 dpllpdeLakggYyeLspeeklkiLkiLcdlllsssavReeie 46 
                 d+++++e+a+  Y++++++ ++k+L+i c+l  +++a+++++e
  KKY23566.1 577 DAEPTQETARLQYATMDINLRVKVLQIACMLSIETNAIKNHME 619
                 799***************************************8 PP

>> DUF5097  Domain of unknown function (DUF5097)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.2e-06     0.012      19     116 ..      86     206 ..      73     209 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.2e-06
     DUF5097  19 stkdlkelsasivkilsskFlinEkvfikkkekyGrivnlvkke....................ytvvihndngskkeevklqeltR.keelskndvle 96 
                 +t  +++l+ +++  ++  F   E+v +  ++ + r+  +vk++                    y v++++d g  +++v+  +l+R ++ ++k  ++ 
  KKY23566.1  86 TTSRIDHLVDEVYDAFKADFYPGEIVSVLMEDGTTRMNGMVKEKakfpailradgsvyrkgvsrYSVKLDSDFGE-MQHVTEDDLQRdRKAFTKMMLRS 183
                 6788999**************************************************************556555.9**********55678999999* PP

     DUF5097  97 flk.tiTidtplg..rllkknvl 116
                 f+k t+T ++ +g   l+k  + 
  KKY23566.1 184 FIKnTVTREAWFGapWLVKPKIA 206
                 *9758*****9997667777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (990 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1815  (0.101233); expected 358.6 (0.02)
Passed bias filter:                      745  (0.0415528); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.51
# Mc/sec: 5833.30
//
Query:       KKY23567.1  [L=296]
Description: putative dolichyl pyrophosphate glc1man9 c2 alpha-glucosyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     2e-112  376.6  14.1   2.4e-112  376.4  14.1    1.0  1  Alg6_Alg8  ALG6, ALG8 glycosyltransferase family
  ------ inclusion threshold ------
        4.7    5.4   9.0          6    5.0   9.0    1.0  1  DUF2070    Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> Alg6_Alg8  ALG6, ALG8 glycosyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  376.4  14.1  2.7e-116  2.4e-112       1     272 [.       8     273 ..       8     293 .. 0.94

  Alignments for each domain:
  == domain 1  score: 376.4 bits;  conditional E-value: 2.7e-116
   Alg6_Alg8   1 alllklllipmyrStDFEvqRnWlaiThslplseWytedlseWtLDYPPlfAYfeyllskvakkvldpemlalessrgyesestklFqRltVivsdlll 99 
                 a++lk+ll+p+y+StDFEv+RnWlaiThslp+++Wy+e++seWtLDYPP+fA fe+lls  a  ++d+ m+++ ++ +y+s++t+ +qR+tVi++++ll
  KKY23567.1   8 ATALKILLFPAYKSTDFEVHRNWLAITHSLPVKQWYYENTSEWTLDYPPFFALFEWLLSLGA-ALVDSGMVQV-KNLDYDSWATVSYQRATVILTEFLL 104
                 589***********************************************************.666*******.************************* PP

   Alg6_Alg8 100 fipavlllvekakkkskkkkrlvllllillspgllliDhiHFQYNgvllGllllsiaallkkkdlllgallFvllLnfKqialylApayfvylLrkycl 198
                 +++ ++ +v+++   +++k +++++++illspgll+iDhiHFQYNg+l+G+l+lsi++++k++++l++a+lF++lL++K+i+lylApayfvylLr ycl
  KKY23567.1 105 AYA-LHKYVQSSP-IQNRKAAHAAAISILLSPGLLIIDHIHFQYNGFLYGVLILSIVFARKRSTMLYSAILFATLLCLKHIYLYLAPAYFVYLLRVYCL 201
                 ***.999985544.457899999****************************************8889******************************** PP

   Alg6_Alg8 199 kkskkklkvslkrllklgvvvlavfallfgPflasgeqlkqvlsRlFPfkRGLfedyvApNfWalynvvdkvle 272
                 + + + ++ ++ + +klg +++a+f+++f+Pf+++g ql+q+ +R+FPf+RGL+++y+ApN Waly+++d+ l 
  KKY23567.1 202 DPK-SVFRPQFLNAAKLGSSIIAIFGFAFAPFVKWG-QLEQLKNRMFPFSRGLCHAYWAPNAWALYSFADRALI 273
                 876.5999*************************988.**********************************987 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   9.0   0.00067         6      13     176 ..      62     234 ..      56     254 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.00067
     DUF2070  13 swkvsllliillalligllaflssklfgill.fglpalvaflltlpvlrilggrltykrslflalltelivviisllaillsallqalvllalvlslal 110
                 +w +sl ++++ + ++++ + +  ++ ++ +     +l+ fll + + +++++ +  +r++  a+++ ++++  +l+  ++ +    +++  l+ls+++
  KKY23567.1  62 EWLLSLGAALVDSGMVQVKNLDYDSWATVSYqRATVILTEFLLAYALHKYVQSSPIQNRKAAHAAAISILLSPGLLIIDHIHFQYNGFLYGVLILSIVF 160
                 566777777777777777777776644444404444888899999999999999889999999999999999888888888755588888889998877 PP

     DUF2070 111 vfalrllvlvavsdesllkavlpaliqpllailllvly...........fspesfllllllslifalavylfivvvd 176
                 +   +++++ a+  ++ll    +  i+++la +++v++           f+p++   + l s i+a++ ++f  +v+
  KKY23567.1 161 ARKRSTMLYSAILFATLL---CLKHIYLYLAPAYFVYLlrvycldpksvFRPQFLNAAKLGSSIIAIFGFAFAPFVK 234
                 777777777776666554...44444444444444444566789999999999999999999999999999877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.31s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1839.40
//
Query:       KKY23568.1  [L=402]
Description: putative lectin family integral membrane [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-27   93.8   0.0    1.4e-26   93.2   0.0    1.2  1  Lectin_leg-like  Legume-like lectin family
     0.0012   18.2   0.1     0.0016   17.8   0.1    1.1  1  MPS2             Monopolar spindle protein 2
  ------ inclusion threshold ------
      0.041   13.8   0.2      0.063   13.2   0.2    1.2  1  GP41             Retroviral envelope protein
      0.043   13.5   0.1      0.078   12.6   0.1    1.4  1  Phage_tail_NK    Sf6-type phage tail needle knob or tip of so
      0.056   13.3   0.3       0.21   11.4   0.3    1.8  1  Dynactin_p22     Dynactin subunit p22
       0.13   12.8   0.2       0.71   10.4   0.0    2.1  2  NPV_P10          Nucleopolyhedrovirus P10 protein


Domain annotation for each model (and alignments):
>> Lectin_leg-like  Legume-like lectin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   0.0   4.8e-30   1.4e-26      14     225 ..      33     232 ..      21     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 4.8e-30
                      CTCTTSSBTTEEEEET-.EEE..SSEEEEE-SS.TTEEEEEEESS-BEESSEEEEEEEEEESS--SS-S-EEEEEEESSSSS...CCSBTTB-S CS
  Lectin_leg-like  14 lgqgskalpnWeyggsa.ild..snqirltsde.qskkGslwtkspvaleswevevsFrvtgseselegdglaiwytsergk...egpvFgskd 100
                         + +++p W++ g+  +++  s+++ lt+    +k+G+lw ++ +ale+w+ e++Fr+ g e    g+ l +wy+s+ ++   +  ++    
       KKY23568.1  33 APDT-RNIPGWKMLGEGhDIEllSDKVILTPPYpGNKRGALWAEHTTALEDWTAEFEFRASGPER--PGGNLQLWYASNGEQaigTSSIYTV-G 122
                      4444.899*****9875234456*******99879****************************55..999********98877677788865.7 PP

                      S-EEEEEEEE-S-TSCTTTSS-SSEEEEEEEESSC---GGGTT.TTTESEEEE---BTESSEEEEEEEEETTEEEEEEETSCCSCCCTTEEEEE CS
  Lectin_leg-like 101 kfdGlailldtydndngpdkknkptisamlndgsleydhekdg.kaqelasCtadfrnkdvetlikikYdknaltvlidsgllenkndyklCfq 193
                      +fdGlai++d+   + g+       i++ lndg++ y   +   ++ +++ C   +rn   ++ ++ik  ++           e++ d++lCf+
       KKY23568.1 123 RFDGLAIVIDS---HGGG----SGSIRGFLNDGTTDYQSRHPAvDSLAFGHCDYAYRNLGRPSVLQIKHGRDNF---------EVRIDNRLCFS 200
                      9*********7...7766....689************87665314456778*******************8555.........55556789*** PP

                      ESSEE--SSBEEEEEEEESSSGGEEEEEEEEE CS
  Lectin_leg-like 194 vkevelPtgyyfgvsaatgdlsdnhdvlslll 225
                       + v lP  y fgv+aat +  d+ +++++ +
       KKY23568.1 201 SNLVVLPPSYSFGVTAATSENPDSFEIFKFVV 232
                      ***************************99875 PP

>> MPS2  Monopolar spindle protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   5.4e-07    0.0016     181     275 ..     270     365 ..     265     377 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 5.4e-07
        MPS2 181 rekeRelleLkkrlseykekYellqrefslykarrveksqns.lktaikheviisElkrklqeqteiisilkeqiqreeGa.sqskr.krlhddgigs 275
                 +  e +  +L+ rl+ ++   ++l ++f+ +k   v++ + s l + + ++  i  l r++q   +++s lk+qi+  + a + sk  +rl++  +g 
  KKY23568.1 270 TSGEAQFADLHDRLQALNGLINSLFQDFQTQK--DVQGVRHSeLLQNMPKDQTILALDRRVQSLETMVSSLKKQIEDTDHArQFSKLhDRLTQTHVGI 365
                 55677888999999999988888888888555..5666666655566666666778********************9977745566556666665443 PP

>> GP41  Retroviral envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   2.1e-05     0.063       5      64 ..     292     351 ..     289     379 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.1e-05
                 XXXXTHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHCHHHH..........HHHHHHH CS
        GP41   5 sltksvqaatlvdgl.qrnvlkvleeqqeldkkleaRlsAleevvrvlgedvaslktrmkl 64 
                 sl ++ q+++ v+g+ + ++l+ + + q + + l+ R++ le +v  l +++++  +  + 
  KKY23568.1 292 SLFQDFQTQKDVQGVrHSELLQNMPKDQTI-LALDRRVQSLETMVSSLKKQIEDTDHARQF 351
                 899************999******999887.78*****************99988876655 PP

>> Phage_tail_NK  Sf6-type phage tail needle knob or tip of some Caudovirales
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   2.6e-05     0.078       4      75 ..     320     392 ..     317     400 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.6e-05
                    XXXXXXXXXXXXXXXXXXXXXHHHHHHHHTS--EEEEEEEEEEEEE-SS-EEHH.HHHTTS--SBS-STTTEE CS
  Phage_tail_NK   4 dissldtrvqslesqvsdhetridaleyattrkksevvysgvsvtiptaptnlv.sllktltpssgtlapffd 75 
                     i +ld rvqsle+ vs  + +i+  ++a    k     +   v i   p+ +   + kt +p   +l+p  d
     KKY23568.1 320 TILALDRRVQSLETMVSSLKKQIEDTDHARQFSKLHDRLTQTHVGITDLPSAFTeGMSKTPSPHPSSLSPTHD 392
                    6889************************998877766666666666555555441355888888888888776 PP

>> Dynactin_p22  Dynactin subunit p22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   7.1e-05      0.21      42     131 ..     267     359 ..     246     378 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.1e-05
  Dynactin_p22  42 ssavskrekikellkkleelekyLdpeyedseelpde..vKleliLaeedeLkktaalleqlqeLkpvlds..eeikdvpelkekLekLsqihl 131
                   ss++s+  ++ +l+++l+ l+ ++++ ++d ++ +d   v+   +L+  ++ + + al   +q+L+++++s  ++i+d ++++ +++kL    +
    KKY23568.1 267 SSITSGEAQFADLHDRLQALNGLINSLFQDFQTQKDVqgVRHSELLQNMPKDQTILALDRRVQSLETMVSSlkKQIED-TDHARQFSKLHDRLT 359
                   789999999999999******999999999997666567777777777777777777777777777777763345666.455666665554433 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.77   2.3e+03      39      54 ..     278     293 ..     266     306 .. 0.55
   2 ?   10.4   0.0   0.00024      0.71      12      61 ..     320     368 ..     317     384 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.77
     NPV_P10  39 elnekLdaqsaqLael 54 
                 +l+++L+a++  +++l
  KKY23568.1 278 DLHDRLQALNGLINSL 293
                 3444444444444443 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00024
     NPV_P10  12 dikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenI 61 
                  i a+d +V++l++ v +++++++d t+   ++ ++ + L++ +  +++ 
  KKY23568.1 320 TILALDRRVQSLETMVSSLKKQIED-TDHARQFSKLHDRLTQTHVGITDL 368
                 6889*********************.667778888888888766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       944  (0.0526521); expected 358.6 (0.02)
Passed bias filter:                      706  (0.0393775); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 2567.19
//
Query:       KKY23569.1  [L=548]
Description: putative ammonium transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     2e-114  382.4  31.1   2.4e-114  382.2  31.1    1.0  1  Ammonium_transp  Ammonium Transporter Family


Domain annotation for each model (and alignments):
>> Ammonium_transp  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.2  31.1  1.3e-118  2.4e-114       2     399 .]      53     465 ..      52     465 .. 0.97

  Alignments for each domain:
  == domain 1  score: 382.2 bits;  conditional E-value: 1.3e-118
                      HHHHHHHHHHHHHHHHHHHHHHHSSGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSCBSSSSSCE-.......TTTTSCCGCCTTCCHHHHH CS
  Ammonium_transp   2 flllsaalvifmqagfalleaglvrsknvlnilvknlldlavvvllyvlfGyslafgkskgvsgfign.......lglsaagvqdetlldglff 88 
                       +++++a+v+ m++g+++l++gl r+k++l++++ ++ ++ v++++++++G+slaf+ s g sgfig          l+a +   + ++++l+ 
       KKY23569.1  53 YIIVASAMVLVMVPGLGFLYSGLARRKSALSMIWACMASMSVITFQWYFWGFSLAFSPS-GKSGFIGDlkhivlsNTLAAPSPGSALIPNLLYS 145
                      6899*****************************************************99.99******999887545555555566678888** PP

                      HHHHHHHHHHHHHHHHHCTTTB-HHHHHHHHHHHHHHTHHHHHHHHHS.SSHHHHTT--.-SSSTTTTHHHHHHHHHHHHHHHS-STTTTGTTT CS
  Ammonium_transp  89 lfqlafaataitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvliDfAgstvVHlvggvagLaaalvlgkregrfegke 182
                      ++q++f+a++++iv gavaer ++ + ++f++ ++tlvy+p+a+w+w+  gw ++ gv+ D+Ag++ V + +g+++La+ +vlg+r++++   +
       KKY23569.1 146 FYQMQFCAVTAAIVMGAVAERGRLLPAMVFIFWWATLVYCPLACWAWNSYGWGYNYGVM-DYAGGGPVEIGSGLSALAYSMVLGRRQEKM---M 235
                      ***********************************************************.****************************99...9 PP

                      SS--GSBHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHH.HHHHHHHHHHHHHHHHHHHHHHHCSS-BHHHHHHHHHHHHHHHTTTTTTS-HHH CS
  Ammonium_transp 183 eaikghnlpfavlGtllLwfgWfgFNaGsaltankrararaavtTllAaaagaltallisrlkegkinvlglanGilAGlVAiTaacavvepwg 276
                       ++++hn++f+vlGt++LwfgW+gFN+Gsa++an ra   a+ +T+l a+++ ++++++++    k++++g ++G+++GlVA+T+a ++++pw+
       KKY23569.1 236 LNFRPHNVTFVVLGTVFLWFGWLGFNGGSAFGANLRAVM-ACWNTNLTASFASFAWVVLDWRLARKWTMVGWCSGAISGLVAATPASGYITPWA 328
                      **************************************9.****************************************************** PP

                      HHHHHHHHHHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHHHHHHHHTSHHHC.............SSHSSTTGGGT-CHHHHHHHHHHHHH CS
  Ammonium_transp 277 AliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaekvv.............askisggllsgegkqlvvqligilvi 357
                      ++i+G+v+gv++++++  +k +++idDs+dv+a Hgv+Gi+Glla+++f++++v              +   +gg++ ++++q+++ql++i+++
       KKY23569.1 329 SIILGIVSGVVCNFATR-VKYWIRIDDSMDVFAEHGVAGILGLLANALFGDDYVFgldgvntgvgnsiTGTGTGGWVIHNYRQIYIQLAYIVAC 421
                      ****************7.**********************************999************99999********************** PP

                      HHHHHHHHHHHHHHHHHHTT..SB--HHHHHHSHHHHHHSSSSB CS
  Ammonium_transp 358 layafvvtlilllllklllg..LrvseeeeevglDvaehgetay 399
                      ++yafvv+ il++++++++g  Lr s+e+e +g+D  + ge+ay
       KKY23569.1 422 TGYAFVVSAILAYIINFIPGlhLRASDEAELLGMDDDQLGEFAY 465
                      ********************999*******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 3606.50
//
Query:       KKY23570.1  [L=595]
Description: putative nitrilase cyanide hydratase conserved site [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-40  137.8   0.2    5.4e-40  137.4   0.2    1.1  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.4   0.2     3e-44   5.4e-40       1     260 [.     276     556 ..     276     557 .. 0.92

  Alignments for each domain:
  == domain 1  score: 137.4 bits;  conditional E-value: 3e-44
                   EEEEEEBB-STTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTBS..........SSHHHHHHHHB.........HSSSHHHHHHHHHHHHHTEEE CS
  CN_hydrolase   1 rvAvvQlpqkaadleanlqklleliaeAarkgadLivlPElfitgy..........keeahfleaAe.........aglgetlallaalarkngiav 78 
                   ++A+v +++ +++++ +l+k++++i++Aa++ + L+++PE+f++gy          k       +A+          +  e l+++ a++rk++i+v
    KKY23570.1 276 KAAAVHAAPIYMNKKTTLDKVVNIISQAAEESITLLAFPEVFVPGYpyfintcsplK-------QAGaiaeyarqsVVALEDLKGVTAACRKFKITV 365
                   57888888867************************************9955554442.......5555555666888899***************** PP

                   EEEEEEEECCTTEEEEEEEEEEEETTSEEEEEEE-SS--EECTTSCECCGHHTSCS-SS..S-EEEETTE.EEEEEEGGGGGSHHHHHHHHHTT-SE CS
  CN_hydrolase  79 vigliereltngklqayntavlldldgklvgkyrKlhLfpgeprpptaverelfepgdg..ipvfdtpvg.kiGaaiCyeigfpellralalkgaei 172
                   ++g++er +++++l  +n++v++d dg+++g +rKl         pt+ er+++++g g  +  ++t+ g k+G + C+e++f  ++ al  +g  i
    KKY23570.1 366 SLGISERVKDGYSL--FNSIVTIDSDGTILGVHRKLQ--------PTFAERYVWSQGSGhtLRTYETKAGyKLGGLACWENTFNGARQALIEQGQHI 452
                   *******8899999..*********************........***********99888999********************************* PP

                   EEE.....BH.GCCCTCHHHHHHHHHHHHHHHHHHTSEEEEEEBEEE............HCETTEEEE--EEEE-TTS-EEEEC.CSSSTEEEEEEE CS
  CN_hydrolase 173 lvn.....lserapvpksmgppqwellgraralengcfviaanqvgg............yeqlilwpvghSaiidpdGrilagl.geeeegvliaei 251
                   +v      ++  +   +  +  q e+l++++al +++fv+ a++                ++li + +g +aii p  +i+ag+ g+ ee++++aei
    KKY23570.1 453 HVGawpalDI--MAGFQGVANSQIEALMKNHALTAQVFVLSAANYVDesclkwieenigPQDLIKEGGGWTAIIHPFCTIIAGPhGRSEEKLVTAEI 547
                   *****98755..78889999************************9999***********9************************************* PP

                   EHHHHHHHH CS
  CN_hydrolase 252 dladvratr 260
                   +l+++++++
    KKY23570.1 548 NLDELGPVK 556
                   ***999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.34s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 3575.38
//
Query:       KKY23571.1  [L=407]
Description: putative annexin a7 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-55  185.1   3.4    1.1e-16   60.6   0.0    4.3  4  Annexin   Annexin
  ------ inclusion threshold ------
        0.1   12.5   0.0       0.19   11.5   0.0    1.6  1  DUF2202   Uncharacterized protein domain (DUF2202)


Domain annotation for each model (and alignments):
>> Annexin  Annexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.0   1.3e-20   1.1e-16       1      66 []     101     168 ..     101     168 .. 0.94
   2 !   40.7   0.1     2e-14   1.8e-10       1      64 [.     175     238 ..     175     240 .. 0.94
   3 !   51.1   0.0   1.2e-17     1e-13       2      65 ..     260     324 ..     259     325 .. 0.91
   4 !   31.0   0.1   2.2e-11     2e-07       3      65 ..     337     404 ..     335     405 .. 0.88

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 1.3e-20
                 HHHHHHHHHHSSSSSCHHHHHHHHHHSTHHHHHHHHHHHHHH..HSS-HHHHHHHHS-HHHHHHHHHH CS
     Annexin   1 qdAelLkkamkglGtdektlieIlatRsnaqlqaifeeYkkk..ygkdLekdIksetsGdfeklllal 66 
                 +dA+ L++amkg+Gt+ek+li+Il +  ++q++  +++Y +    + +Le dI +etsG+f++ l+al
  KKY23571.1 101 RDAQALQSAMKGIGTNEKQLIRILSKPDPNQMRLLKNAYVSLpsQKTSLEIDIHKETSGHFRDGLMAL 168
                 69*************************************99722568*******************98 PP

  == domain 2  score: 40.7 bits;  conditional E-value: 2e-14
                 HHHHHHHHHHSSSSSCHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS-HHHHHHHH CS
     Annexin   1 qdAelLkkamkglGtdektlieIlatRsnaqlqaifeeYkkkygkdLekdIksetsGdfeklll 64 
                 qd++l +ka+ + Gt+e+ l+++l+ Rsna+++ai++ Y+++++ +Le  +++++s + ++l+ 
  KKY23571.1 175 QDVYLVNKAIDRPGTKESFLNDVLCCRSNADIRAIKDLYHRTHKISLEAHVSKDLSLKTKELFK 238
                 79999**************************************************988888775 PP

  == domain 3  score: 51.1 bits;  conditional E-value: 1.2e-17
                 HHHHHHHHH.SSSSSCHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS-HHHHHHHHH CS
     Annexin   2 dAelLkkam.kglGtdektlieIlatRsnaqlqaifeeYkkkygkdLekdIksetsGdfekllla 65 
                 d+  L++am +g G+d+ t+++Il++Rs +q++ i ++Y++++g++L +++++++sG+++++l+ 
  KKY23571.1 260 DVSDLRRAMpEGDGKDQLTVCSILTSRSDNQIRGIVHKYQQETGNSLSSAVSKKFSGHMKDALIL 324
                 55556777757899*************************************************86 PP

  == domain 4  score: 31.0 bits;  conditional E-value: 2.2e-11
                 HHHHHHHHSSSSSCHHHHHH..HHHHSTHHHHHHHHHHHHHHHS...S-HHHHHHHHS-HHHHHHHHH CS
     Annexin   3 AelLkkamkglGtdektlie..IlatRsnaqlqaifeeYkkkyg...kdLekdIksetsGdfekllla 65 
                 Ae+L++ mkgl t+++ l+e  + ++   a   +++++Y+++y    kdL + Iks+tsGd+++l+la
  KKY23571.1 337 AEQLEATMKGLVTNDDLLVErvVRCHWDRAACDQVKRAYRHRYAsdkKDLMSRIKSKTSGDYKNLMLA 404
                 99*****************944556667788889*********5555*******************98 PP

>> DUF2202  Uncharacterized protein domain (DUF2202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.2e-05      0.19      88     144 ..     248     304 ..     163     316 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.2e-05
     DUF2202  88 daLkvgatiedldiaDlekalketdnkdikevYenllkGsrnhlRsfvrkleergke 144
                 +++       d d++Dl++a+ e d kd  +v + l+  s n +R+ v+k ++   +
  KKY23571.1 248 ESVPYDPVATDRDVSDLRRAMPEGDGKDQLTVCSILTSRSDNQIRGIVHKYQQETGN 304
                 555555566789*************************************99987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2550.57
//
Query:       KKY23572.1  [L=295]
Description: putative dolichol-phosphate mannosyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-81  274.0   0.0    1.4e-81  273.8   0.0    1.0  1  DUF1749        Protein of unknown function (DUF1749)
    2.6e-05   23.6   0.1      0.034   13.4   0.0    2.6  3  Hydrolase_4    Serine aminopeptidase, S33
    2.6e-05   24.0   0.0     0.0016   18.2   0.0    2.2  1  Abhydrolase_1  alpha/beta hydrolase fold
    6.9e-05   23.6   0.0     0.0001   23.0   0.0    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.067   12.7   0.0          1    8.8   0.0    2.1  2  Peptidase_S9   Prolyl oligopeptidase family
      0.096   12.5   0.0       0.37   10.6   0.0    1.9  2  Ser_hydrolase  Serine hydrolase


Domain annotation for each model (and alignments):
>> DUF1749  Protein of unknown function (DUF1749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.8   0.0   4.8e-85   1.4e-81       7     299 .]      11     293 ..       1     293 [. 0.92

  Alignments for each domain:
  == domain 1  score: 273.8 bits;  conditional E-value: 4.8e-85
     DUF1749   7 pgllheyaerl..vafeyetsgelkskallFigGLgdGlltvpyvkelanaldea..gwsvvelqlsssyggwGtgsLkrDaeeieklveYlkktksGe 101
                 +  +h y++     a+e+ + +  ++ka++ igG +dG++t+  v+  a+ l  +  +wsv+e+++sssy+g G gsL++D +ei+klv Yl+ +    
  KKY23572.1  11 ACYVHFYSTDPtlTAYELPSPN--ATKAIILIGGYTDGPHTLGLVQTTAAHLATTlpEWSVFEIRMSSSYSGCGHGSLDQDIKEISKLVRYLRGI---- 103
                 3788888876533788888877..69************************99664459************************************9.... PP

     DUF1749 102 ekkekvvlmGHstGsqdvlyYltssnerdrekvdgailqapvsDReailkvleerkklkelvalakklvdkgkaeeilprelaekvgletpvsarRfls 200
                  +k+k+v++GHstGsqd+++Y  ++++   + vdg+++q+pvsDRe ++ ++   ++l +  ++a +++ +gka+e++pre+    +   p +a+R+ s
  KKY23572.1 104 -GKQKIVIIGHSTGSQDCIHYHLNAQS--SNPVDGFVMQGPVSDREWLAMMIPS-DQLAQRKKIAADMIADGKAQEMMPRETGWLSF-LPPATAYRYNS 197
                 .59******************999977..999*********************9.8999999*******************887777.89********* PP

     DUF1749 201 LasvdgdDDfFssDlsdeklektfGkvkepllillsekDefvpesvdkedllerwkeavkkkewseesGiipgAsHnveeesaeeaqkelvervlsflk 299
                 +as +gdDD+FssDlsde l+ tfGk+++p+lil s+ De+v+++ dk++l+++w++++ + +++e sG ipgAsH+v++++++    ++ e+v+ flk
  KKY23572.1 198 MASKGGDDDYFSSDLSDETLKGTFGKLSKPTLILHSDDDETVDPKLDKVALIKKWASFAPQGTVNELSGTIPGASHAVKQPESRV---WFAETVEKFLK 293
                 *******************************************************************************665555...99999999986 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.37   1.1e+03      96     139 ..      29      69 ..      22      87 .. 0.71
   2 !   13.4   0.0   1.1e-05     0.034      60     116 ..      91     148 ..      80     180 .. 0.72
   3 !    7.3   0.0   0.00086       2.6     188     210 ..     222     244 ..     207     275 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.37
  Hydrolase_4  96 rypdkvaglilsaPalkikaklkappllklllkllgkllpklqv 139
                    p+  +++il++   + ++      l++ ++  l+++lp+++v
   KKY23572.1  29 PSPNATKAIILIGGYTDGPHT---LGLVQTTAAHLATTLPEWSV 69 
                  556777899999999988865...45666667777777888877 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.1e-05
  Hydrolase_4  60 dDlaafvekvkeehpelplfllGhSmGGliallyl..lrypdkvaglilsaPalkikak 116
                  + ++++v+ ++   ++++++++GhS+G+   ++y   ++ ++ v+g+++ +P+ + ++ 
   KKY23572.1  91 KEISKLVRYLR-GIGKQKIVIIGHSTGSQDCIHYHlnAQSSNPVDGFVMQGPVSDREWL 148
                  33334444444.334569****************966666669*********9766544 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.00086
  Hydrolase_4 188 akitlPllllhGeaDkvvdpeas 210
                   k++ P+l+lh+++D+ vdp+  
   KKY23572.1 222 GKLSKPTLILHSDDDETVDPKLD 244
                  68899**************9865 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.2e-07    0.0016      67     236 ..     100     251 ..      35     276 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 5.2e-07
                    HHHCTTSSEEEEEETHHHHHHHHHHHHH..GGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHH CS
  Abhydrolase_1  67 ldalgddkltlvGhSmGGmialayaaey..perVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvda 160
                    l   g +k++++GhS G++ + +y + +   ++V+++v+ g+     s +e+  + ++s++ + ++ +a++    +  +   +  + +++      
     KKY23572.1 100 LRGIGKQKIVIIGHSTGSQDCIHYHLNAqsSNPVDGFVMQGP----VSDREWLAMMIPSDQLAQRKKIAADMIADGKAQEMMPRETGWLS------ 185
                    77789***********************99************....88888888889999988888888888888877777777777666...... PP

                    HHHHCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHH.HHHHHHCTHHHHSEEEEEEETTCSSSCH.HHHHHHHHC CS
  Abhydrolase_1 161 lkfpdkskrfpssgsdnasslatgalksieqwpttdsak.lllrlrelknvlaptlvisgtsDplvpp.kaledlaql 236
                          +  + + +++n++ ++ g++ ++++   + + k  +++l +      ptl++++++D  v+p   ++ l ++
     KKY23572.1 186 ------FLPPATAYRYNSMASKGGDDDYFSSDLSDETLKgTFGKLSK------PTLILHSDDDETVDPkLDKVALIKK 251
                    ......45555555555565666655555555444444404455555......9999999999999886555555555 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   3.4e-08    0.0001      36     211 ..      80     277 ..      37     287 .. 0.52

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 3.4e-08
                    TSTS-GGCS--HHHCHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC.........EE.EEES-..----TTT.........S----TTHHH CS
  Abhydrolase_6  36 GhGrsdpppldledladlaalldelaagggpvvlvGHSlGGalalaaapla.......lvvg.vlldppptalpagl.........laaalellla 114
                    G+G   + + d  ++  l+++l+++  g  ++v++GHS G     +   +        +v g v+  p   + +  +         la + ++++ 
     KKY23572.1  80 GCG-HGSLDQDIKEISKLVRYLRGI--GKQKIVIIGHSTGSQDCIH---YHlnaqssnPVDGfVMQGP---VSDREWlammipsdqLAQRKKIAAD 166
                    444.345566666666667777777..48888*********98888...5555577779999999999...3333332432211112222222222 PP

                    HHH.......TT-CCCCHCCHS-HSCCCCHHHCCCCHCHCCCGHH....HHCCHHC....HTTCCHHTT-TTGCEEECTT-C.........HHHHC CS
  Abhydrolase_6 115 lla.......llrllawlsreplprlfladedadaawrarlarla....allaglg....llpaaawadlpvpllvlggeDp.........lvprl 186
                     +a         r  +wl       +fl+     +a ++r+  +a    + + +      +     +  l  p+l+l+++D+         +  +l
     KKY23572.1 167 MIAdgkaqemMPRETGWL-------SFLP-----PATAYRYNSMAskggDDDYFSSdlsdETLKGTFGKLSKPTLILHSDDDetvdpkldkV--AL 248
                    222111112111113444.......3333.....5555555555532223333222112222355777777777999644444533333320..23 PP

                    HHCCCH.STTEEET...CE...SSS-HHH CS
  Abhydrolase_6 187 lerlla.qagarlp...vvlpgaGHlphl 211
                    +++++  ++  ++     ++pga+H++ +
     KKY23572.1 249 IKKWASfAPQGTVNelsGTIPGASHAVKQ 277
                    33333332222221455789999998755 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.045   1.3e+02      59     100 ..     101     144 ..      81     177 .. 0.69
   2 ?    8.8   0.0   0.00034         1     142     206 ..     224     293 ..     182     295 .] 0.79

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.045
                   TS--GGGEEEEEETHHHH.HHHHHHH.H-GGG-SEEEEESE--- CS
  Peptidase_S9  59 gyvdserlaitGgSyGGy.ltgaaln.qrpdlFkaavaevpvvd 100
                     + +++++i G+S G +  +   ln q ++  ++ v + pv+d
    KKY23572.1 101 RGIGKQKIVIIGHSTGSQdCIHYHLNaQSSNPVDGFVMQGPVSD 144
                   357789*********98733344455566666666666666665 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00034
                   ---EEEEEEETT-SSS-T.HHHHHHHHHHH....--S-SEEEEEETTS-SSTTSSHHHHHHHHHHHHHHH CS
  Peptidase_S9 142 aypplLlihGlaDdrvpp.aealklvaaLq....kkgknvlllifpdegHgvgkprakveelarllaFlk 206
                    ++p+L++h++ D+ v p    + l+++      +  +n l  + p++ H v++p+++v   +++ +Flk
    KKY23572.1 224 LSKPTLILHSDDDETVDPkLDKVALIKKWAsfapQGTVNELSGTIPGASHAVKQPESRVWFAETVEKFLK 293
                   789*************994355666666667764555668899*************99999999999987 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00013      0.37      54      93 ..     105     145 ..      59     174 .. 0.78
   2 ?   -1.0   0.0      0.46   1.4e+03     111     131 ..     222     242 ..     210     255 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
                    STTEEEEEETCHHHHHHHHHH.HTTSSSEEEEEEET--SGG CS
  Ser_hydrolase  54 eekvvlvAHSlgclavlhaae.lqlakkvagalLVapadve 93 
                    ++k+v++ HS g   ++h+   +q+ ++v+g ++  p + +
     KKY23572.1 105 KQKIVIIGHSTGSQDCIHYHLnAQSSNPVDGFVMQGPVSDR 145
                    5789**************99889*********999998754 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.46
                    SHHCCHCEEEEETTBTTC-HH CS
  Ser_hydrolase 111 eklpfpslvvaSenDpyvsfe 131
                     kl+ p+l++ S++D+ v+ +
     KKY23572.1 222 GKLSKPTLILHSDDDETVDPK 242
                    5788899999*****998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 1814.57
//
Query:       KKY23573.1  [L=553]
Description: putative transferase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-35  121.4   0.0    5.7e-19   68.1   0.0    2.9  2  Transferase   Transferase family
  ------ inclusion threshold ------
      0.044   13.7   0.1       0.12   12.3   0.1    1.7  1  AraC_binding  AraC-like ligand binding domain


Domain annotation for each model (and alignments):
>> Transferase  Transferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.0   6.4e-23   5.7e-19       2     178 ..       9     216 ..       8     237 .. 0.77
   2 !   49.8   0.0   2.3e-17     2e-13     232     395 ..     316     482 ..     308     503 .. 0.75

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 6.4e-23
  Transferase   2 kvtiiskevikPseptpeq.tLkLSilD.lllpevivkacyfykknkelsqenvsekLktsLsetLtkfypLAGrLk.......tse.sgrlelsC.. 87 
                   + iis+e+i+P +++    t  LSi+D  + +   + a++f++       +  s +L+ sL  +L+++    G+L+        +  ++r++  C  
   KKY23573.1   9 DIHIISSERIFPNNRSLTPsTVALSIVDaAVANYSPTGAIWFFDHVPGGHCD-YSRHLRASLQTVLDNYQQWTGELHwsnyepdSNDhTKRFQRLClt 105
                  5889*********9987776********8888888899*****998887777.49*********************6222222222347899999955 PP

  Transferase  88 ....ndeGadFveAeadveLsdlkkle............pddslenllpq.....lavkkegeaipllavqvTkfkcGgvalgvsvsHaiaDgaSlkt 164
                       d G +Fv+A +  +L ++                 ++ l  llp      ++ k  + + p lavqvT f c g+a+g+ +sH   D++ l t
   KKY23573.1 106 wgtkSDPGTEFVTASVSETLASIVPHWryrsrslkawdhTNVRLDGLLPRatlalRHLKITP-NAPALAVQVTTFSCQGIAIGIQMSHPLGDAMTLAT 202
                  55555778*********999776432222233444554666778899996222224555555.47********************************* PP

  Transferase 165 fieswaelargekk 178
                  f+++w+++++   +
   KKY23573.1 203 FVRDWTAISKAMLA 216
                  ********987733 PP

  == domain 2  score: 49.8 bits;  conditional E-value: 2.3e-17
  Transferase 232 askleeLkkkasdesngkpa..trfesvtallWrcavkarkl.desketvlgiavdiRsrlepklpeeyfGNallsvvvkstakellseelsrivekv 326
                   ++++e+ + a+++s ++ +  +r +++ a+lW+++ ++r l ++s +  l+ + ++R rl+p+lp ++ G  +l       a ++   +ls i++ +
   KKY23573.1 316 GDEIQEIWEAAQGNSSSTSPtvSRHDALLAHLWQLINRSRLLrNPSTPVHLLPSLGLRTRLSPPLPATFLGSPILMTDITLPATAVCTSPLSTIAQTI 413
                  4556666555555444444434*****************98725566699************************************************ PP

  Transferase 327 keavkkaitkeylsseidweenstlkaelvskgkkdgeevtv.sswlklplyevdFG..wgkPvyvvpvvss 395
                  +   ++  t +     +  ++ ++ +  ++  g     e+t+ +sw+ l++ye+dFG   g+P yv  v   
   KKY23573.1 414 SSVQRQ-FTADTIPALLHDMIYADCPQ-RIWMGCLG-TEYTMaTSWVHLGVYEMDFGlgMGRPRYVEAVLIA 482
                  988888.55555555555555545665.56666666.5555538999*********7325799998876655 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.3e-05      0.12      68     117 ..     306     354 ..     299     364 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.3e-05
                   EEEEEEEEE---GGGGGGG---EEETTEEE..E---TTTHHHHHHHHHHH CS
  AraC_binding  68 gweyrwlyfegelleriledssilagapllpalledeelaqllralfrll 117
                   +++ ++l+f+g+++++i+e +++  +++    + ++ +l+++l++l+ + 
    KKY23573.1 306 PCAAYILHFSGDEIQEIWEAAQGNSSSTSPT-VSRHDALLAHLWQLINRS 354
                   68899****************9998876433.999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.53
# Mc/sec: 3128.53
//
Query:       KKY23574.1  [L=273]
Description: hypothetical protein UCRPC4_g02837 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1819.74
//
Query:       KKY23575.1  [L=303]
Description: putative pinin sdk mema domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-31  108.2  13.5    2.9e-31  108.2  13.5    2.9  3  Pinin_SDK_memA  pinin/SDK/memA/ protein conserved region


Domain annotation for each model (and alignments):
>> Pinin_SDK_memA  pinin/SDK/memA/ protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2      0.39     7e+03      34      35 ..      38      39 ..      22      67 .. 0.47
   2 !  108.2  13.5   1.6e-35   2.9e-31       2     129 ..      75     189 ..      74     190 .. 0.96
   3 ?   -4.9  12.3         1   1.8e+04      23      59 ..     212     249 ..     191     292 .. 0.46

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.39
  Pinin_SDK_memA 34 rr 35
                    +r
      KKY23575.1 38 KR 39
                    22 PP

  == domain 2  score: 108.2 bits;  conditional E-value: 1.6e-35
  Pinin_SDK_memA   2 eekkRnrRlfgaLlgtLqkfkkeeekqkekeerraeiekrleekakeekeeleerkrekreeleeerraeqkelraleeklelkelmetwhenkk 96 
                     ee+kR++Rlfga+lgtL++++++   q+    +raeiek++ +k+k ++ee+eerk++++eel+  rr++qk +   +e+       + +h+n +
      KKY23575.1  75 EERKRGQRLFGAILGTLSQSSSSV-GQR----KRAEIEKKQLDKLKARREEDEERKQKRKEELTVTRRRQQKLW---DEEG-----IRMRHRNTL 156
                     79********************99.556....7*****************************************...9999.....99******* PP

  Pinin_SDK_memA  97 alanflrTktePpiyYlPwkltekteelleeqv 129
                     a+a+fl+Tk+ePp+ Y+Pw+l+ ++ee++++q+
      KKY23575.1 157 AMAHFLKTKAEPPLCYKPWELRAEEEEIIQSQI 189
                     ******************************997 PP

  == domain 3  score: -4.9 bits;  conditional E-value: 1
  Pinin_SDK_memA  23 keeekqk....ekeerraeiekrleekakeekeeleerkre 59 
                     +ee        ++ +r +ei++   e +  +k  +++ kre
      KKY23575.1 212 QEE---PentkDEPHRPQEIKQPKPESLPDRKMDDAKAKRE 249
                     111...12222333444444444444444444444222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2285  (0.127447); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.40s 00:00:01.23 Elapsed: 00:00:00.61
# Mc/sec: 1486.86
//
Query:       KKY23576.1  [L=377]
Description: putative actin monomer binding [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.9e-27   93.6   0.0    7.2e-15   54.9   0.0    2.2  2  Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein


Domain annotation for each model (and alignments):
>> Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   1.5e-13   2.8e-09       2     113 ..      11     123 ..      10     131 .. 0.76
   2 !   54.9   0.0     4e-19   7.2e-15      12     120 ..     211     320 ..     200     321 .. 0.84

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.5e-13
                  HHHHHHHCTTT.SSEEEEEEECTTTEEEEEE....SS-....HHHHHHHHHHTTT-EEEEEEEEEECCSECCEEEEEEEEE--TTS-HHHHHHHHHHH CS
  Cofilin_ADF   2 keafkelksgkktkyilfkidddkeeivvee....ege....tyeelreelpeseprYavydveyehddeskrsklvfIswvPdsapikqkmlyassk 91 
                  +eaf+ + s+++   + + +++d+e +++ +    +++    ++  l + l+ + p Y +++ +   d+     klv ++++P++ap+++k l+as++
   KKY23576.1  11 QEAFRAFTSNSS--LFALPVTIDSERLTPLDpipfTSSsfasSLPSLEQLLQPKTPIYLLLRRD---DG-----KLVAVTYIPSTAPVRSKTLFASTR 98 
                  678888888775..55555555567788777676644446676677777888889*******76...55.....9*********************** PP

                  HHHHHHCTTSEE.E...EEE-CGGCC CS
  Cofilin_ADF  92 dalkkelkgisv.e...ieatdldel 113
                  ++l++el gi++ e   i++td+ e+
   KKY23576.1  99 ATLVREL-GIEKfEagtIFVTDAYEV 123
                  *******.**9634556777777665 PP

  == domain 2  score: 54.9 bits;  conditional E-value: 4e-19
                  T...SSEEEEEEECTTTEEEEEESS-..HHHHHHHHHHTTT-EEEEEEEEEECCSECCEEEEEEEEE--TTS-HHHHHHHHHHHHHHHH..HCTTSEE CS
  Cofilin_ADF  12 k..ktkyilfkidddkeeivveeege..tyeelreelpeseprYavydveyehddeskrsklvfIswvPdsapikqkmlyasskdalkk..elkgisv 103
                     + + +++++d+ +e+iv+ ++ +  + ++l+ ++p+s+p Y +y++  +       s+++f +++P++ ++kq+mlyass++ +    + +gi v
   KKY23576.1 211 LseSGSLVILGLDIATETIVLHSSYDsvSPNDLAGKIPSSQPSYSFYNYPLT-------STVLFAYTCPSGMSVKQRMLYASSRNGVLLisKNEGIDV 301
                  3446689****************6667899******************9954.......579*************************97545568887 PP

                  E..EEE-CGGCCSHHHHHH CS
  Cofilin_ADF 104 e..ieatdldelteeelke 120
                     iea ++de++e  l +
   KKY23576.1 302 AkrIEAGSPDEVDEGRLAD 320
                  447**********987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 2296.18
//
Query:       KKY23577.1  [L=121]
Description: putative amino acid permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0011   17.9  14.0     0.0012   17.7  14.0    1.1  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7  14.0   6.9e-08    0.0012       9      82 ..      44     120 ..      36     121 .] 0.64

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 6.9e-08
  AA_permease_2   9 lvigsv...igsgifvknlaasggpalilwvw.iavligslavllvyaElssalprsgGiyvytkaafgkkvaflsaw 82 
                    l++ ++    g g+ + ++++ +  a ++w + ia+ ++  +v l +aEl+sa+   g +y +++a+ ++ +a+++++
     KKY23577.1  44 LSYALLatwNGYGSAFGTGFTEASFAGTIWTLfIAAAMT-GIVTLGMAELASAFGVAGAQYYWSYAVASPEWAPFASY 120
                    444444333333333333344444444444330444444.69********999**********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 782.84
//
Query:       KKY23578.1  [L=330]
Description: putative zip zinc transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-18   67.5   3.2    1.5e-18   67.1   3.2    1.1  1  Zip       ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   3.2   8.4e-23   1.5e-18     118     329 ..      98     322 ..      82     326 .. 0.70

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 8.4e-23
         Zip 118 ssesaakksvsndkveeseekedhvaeadtdadske..elrngkqeksesekeqas............eeedkeklaslkvraiilllglilHsfidGL 202
                 +s++  + + s +k + s+ ++dhv+ a+++  + +  ++  +++++++s+k+++s             ++++ +  +   +++   +++ +H++++G+
  KKY23578.1  98 QSPQTQQAKPSGVKRNVSQTSFDHVPLARSRSATHHfhHQPTQNGHPDGSKKRRPSssfsmgqeshaqAHHHHIPNNAFMSIGLQTSIAIAVHKLPEGF 196
                 3333333333444444444444444444444443330033444445555555555577877776666667777777888888***************** PP

         Zip 203 AlG..vssssstgislfiAvllHelpeelglgaiLlkaglsrkkav.llnllfaltaplGiliGilvrs...isessgaeivsgillalsaGtflYval 295
                  +     ++ + g+s+f+A+++H++ e++++ ++L+ a  sr ka+  +++l +++ plG++++ l  +    ++ +  + v+g ++a++aG++  val
  KKY23578.1 197 ITYatNHANPTLGFSVFMALFIHNITEGFAMALPLYLALNSRVKAIiWSSILGGASQPLGAGLAALWFKmagEGSMKPGDRVYGGMFAVTAGIMTSVAL 295
                 99966677899***********************************777888899********999888885566667899**************9998 PP

         Zip 296 vellphEllnekgssslkqsllqllglllGfalm 329
                  +l + E l+  +      + l++ + +lG++++
  KKY23578.1 296 -SLFS-ESLSMTH-----SKGLCITFAFLGMGVL 322
                 .5666.4444442.....3456666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.51
# Mc/sec: 1937.85
//
Query:       KKY23579.1  [L=247]
Description: putative mitochondrial nuclease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-60  203.9   0.0    3.2e-60  203.8   0.0    1.0  1  Endonuclease_NS  DNA/RNA non-specific endonuclease


Domain annotation for each model (and alignments):
>> Endonuclease_NS  DNA/RNA non-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.8   0.0   1.8e-64   3.2e-60      32     225 ..       2     206 ..       1     207 [. 0.97

  Alignments for each domain:
  == domain 1  score: 203.8 bits;  conditional E-value: 1.8e-64
                      TTEEEEEEEEESCGGGSS-TT--GG---B--TTS-CCSG---HHHCTTS.SSEEEESS-GGG--SSHHHHHHTTBGGGEEEE-HH.HHCTHHHH CS
  Endonuclease_NS  32 rriplwvaenldgasvnasaaerrgpsfkadpripqlsfrtqysdyagskgldRGHLaaaadfkfsteanaatfnytNivPQvag.fNqgnWlr 124
                      +r+p+wvae++++as+++++a+r+++ f +d ++p+  fr++  dy +s g+dRGH+++aad k+s++a+++tf +tN++PQv + fN+ +W++
       KKY23579.1   2 TRNPNWVAEHITPASLAMNNADRKHSVFVEDASVPAM-FRAKLADYVRS-GYDRGHQVPAADAKWSQSAMDETFLLTNMCPQVGDgFNRDYWAH 93 
                      699******************99**************.***********.9******************************************* PP

                      HHHHHHHHHCTTS.EEEEEEEEES-ECC-.........EEEETT.TTEE--SEEEEEEEEECCTTT...CEECCEEEEEESSSS-TTS-GGGGB CS
  Endonuclease_NS 125 lEnlvrklvrkydrklyvvtGpvfvprll.........yeligk.nkvavPthfwkvilsedaddk...gtlnaaafllpnepiaderpltayq 205
                      +E+++r+l+ ky  ++++vtGp++ p+ +         ye+ig+  +vavPthf+kvi++e+++d      +   af+lpn+pi+++++l +++
       KKY23579.1  94 FEDFCRRLTNKYP-SVRIVTGPLYLPKRDptdgkwrvtYEVIGNpPNVAVPTHFYKVIYGEQTPDSgssAPVALGAFVLPNAPIDNSKSLADFE 186
                      ************9.9************************************************7777988999999****************** PP

                      --HHHHHHHHT--TTTTS-H CS
  Endonuclease_NS 206 vpvdeleeltGldffcnvaa 225
                      vpv+++e+++Gl+f + +++
       KKY23579.1 187 VPVEAVERASGLEFVSRLPT 206
                      **************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1631.42
//
Query:       KKY23580.1  [L=528]
Description: putative f-box domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-07   30.3   0.1    7.7e-07   28.8   0.1    1.7  1  F-box       F-box domain
    2.8e-06   27.1   0.3    6.8e-06   25.9   0.3    1.7  1  F-box-like  F-box-like
     0.0081   16.0   0.6      0.024   14.5   0.6    1.7  1  Sorb        Sorbin homologous domain
  ------ inclusion threshold ------
      0.063   13.2   0.4       0.19   11.7   0.2    1.8  2  TarH        Tar ligand binding domain homologue


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.1   1.7e-10   7.7e-07       3      36 ..      14      47 ..      13      56 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.7e-10
                HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHH CS
       F-box  3 lsrLPsevlrhILerLplsdllalrrVSkgwril 36
                l++L +e++ hILe+L ++d+l+l++++ + r++
  KKY23580.1 14 LLELAPEIIQHILEYLKPKDVLSLSQTCSTARQF 47
                678899************************9986 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.3   1.5e-09   6.8e-06       6      47 ..      19      61 ..      15      62 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.5e-09
  F-box-like  6 dEiLlqIFsyLppsdLlrlalVCrrWrrva.ldtplLWrrlvl 47
                +Ei+ +I++yL+p+d l+l+++C+  r+++  +++lLW++ ++
  KKY23580.1 19 PEIIQHILEYLKPKDVLSLSQTCSTARQFTlPSNQLLWQTCFI 61
                7****************************964456***99776 PP

>> Sorb  Sorbin homologous domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.6   5.3e-06     0.024      14      35 ..      75      97 ..      71      98 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.3e-06
        Sorb 14 iPlalrntve.drskDWYktmFK 35
                +P+a+rn+ + + + DWY+++ K
  KKY23580.1 75 LPTARRNNAKiEEEWDWYTELRK 97
                8******************9866 PP

>> TarH  Tar ligand binding domain homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   4.2e-05      0.19      87     148 ..      75     137 ..      58     152 .. 0.88
   2 ?   -3.3   0.0       1.6   7.3e+03      28      43 ..     375     390 ..     375     392 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.2e-05
                 HHHHHHHHHHHHHHHHHHHTS---GGGHH.HHHHHHHHHHH.HHHHHHHHHHHHHTT-HHHHH CS
        TarH  87 laraeeslaqseeawkaYlalprtaeeeealaaelkakyka.lqdglapliaaleagnleaff 148
                 l +a+++ a++ee w+ Y +l +     +a+ +e ++k+k+ +++++a li ++e+  + +++
  KKY23580.1  75 LPTARRNNAKIEEEWDWYTELRKRYIAIRAIVSEDAEKRKEnYEENIATLISMVETASRLKVD 137
                 679**************************************************9987666555 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.6
                 SSSSSHHHHHHHCHHH CS
        TarH  28 lglsglsrsndalrev 43 
                 l++sg+srs++ l+++
  KKY23580.1 375 LFFSGVSRSHEELDAT 390
                 79*********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.51
# Mc/sec: 3119.09
//
Query:       KKY23581.1  [L=600]
Description: putative atp dependent rna helicase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-43  148.4   2.2    3.5e-43  147.4   2.2    1.5  1  DEAD        DEAD/DEAH box helicase
    4.9e-30  104.1   0.1    1.1e-28   99.8   0.0    2.5  2  Helicase_C  Helicase conserved C-terminal domain
    5.2e-06   26.6   0.0    1.3e-05   25.3   0.0    1.7  1  ResIII      Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.025   13.9   0.1      0.059   12.7   0.1    1.6  1  CMS1        U3-containing 90S pre-ribosomal complex subunit
       0.36   11.1   2.1        1.5    9.1   0.1    2.7  2  AAA_22      AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.4   2.2   9.8e-47   3.5e-43       1     175 [.      47     220 ..      47     221 .. 0.91

  Alignments for each domain:
  == domain 1  score: 147.4 bits;  conditional E-value: 9.8e-47
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS....TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST..SEEEEEETTSSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet....kgktgpkalivePtreLaeqtlnnlkkfkkyid..lrvlliiggvaardqlsk 93 
                 t iQaeaipl+l+g+d++++a+TGsGKT+a+++pvlq+v+ +     +++++ al+++PtreLaeq+++ ++ f  y++  +r++ ++++v+    ++ 
  KKY23581.1  47 TLIQAEAIPLALEGKDIVARAKTGSGKTAAYALPVLQSVLIRqaatPKTKTTTALVLVPTRELAEQVHKVFSLFSAYCTkeVRCVNLTQKVSDAVLRTL 145
                 569***********************************98778999566667*************************6635777777778888777777 PP

                 HHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  94 ldngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 l +++divv+tpgr  + l++g+l+l++++ lV+DEad +l+ g++++++++++++       ++  q++++SATl+++v++
  KKY23581.1 146 LAESPDIVVTTPGRASQSLNNGSLSLQDLTHLVIDEADLVLSYGYEEDMQTLATAI-------PKGVQTLLMSATLTSEVTT 220
                 7788****************************************************.......55677*********98876 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0       0.1   3.7e+02      13      74 ..      94     157 ..      82     196 .. 0.67
   2 !   99.8   0.0     3e-32   1.1e-28       5     111 .]     259     411 ..     255     411 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.1
                 TTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTT.....STHHHHHHHHHHHHTTSSSEEEESG CS
  Helicase_C  13 eeeggkilifvntidrlek.vklllekkgikvavlhge.....lpqnereeileqfnkgesdvLiatd 74 
                 + ++ ++l+ v+t++ +e+  k++    ++ +a+++ e     l+q+  +++l+   +++ d++++t 
  KKY23581.1  94 KTKTTTALVLVPTRELAEQvHKVF----SLFSAYCTKEvrcvnLTQKVSDAVLRTLLAESPDIVVTTP 157
                 566778899999999776643333....2222222222223338999999999999888888888874 PP

  == domain 2  score: 99.8 bits;  conditional E-value: 3e-32
                 HHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGG............................ CS
  Helicase_C   5 allellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdv............................ 75 
                   +  +kl+ ++gk++ifv  +dr +++kl+le++gik++vl++elp n+r++++++fnk+ +d++ia d+                            
  KKY23581.1 259 LTYVVFKLKLIKGKCIIFVSDVDRSYRLKLFLEQFGIKSCVLNSELPVNSRIHVVQEFNKNVYDIIIAADDqevlggiankqsadgeanavapdesede 357
                 444445999**************99999*******************************************9999999999999999999999999999 PP

                 ..................GTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  76 ..................aerGidipkvnlVinfdlprnvtsyiqriGRtgRag 111
                                   ++rGid+++v +V nfdlp++ +sy +riGRt+Rag
  KKY23581.1 358 dlpskkkrklaskdkdygISRGIDFQNVACVLNFDLPTTSKSYTHRIGRTARAG 411
                 999999999999999999999*******************************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   3.5e-09   1.3e-05      25     141 ..      61     182 ..      32     216 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 3.5e-09
                 SEEEEEESTTSTHHHHHHHHHHHH-S............-EEEEESSHHHHHHHHHHGGGGTGG.....GEEEESSS-B--.........-SEEEEEHHH CS
      ResIII  25 krglikmaTGtGKTlvaaklierllkkgkee.......kflflvprkslleqtleefkkflseayke.igkkvsgdkkka..kekdstnkkilvttiqs 113
                 k ++  + TG+GKT  +a  + +    ++          +l+lvp+++l eq  + f+ f+  ++ke  + +++++  +a  +   +++ +i+vtt  +
  KKY23581.1  61 KDIVARAKTGSGKTAAYALPVLQSVLIRQAAtpktkttTALVLVPTRELAEQVHKVFSLFSAYCTKEvRCVNLTQKVSDAvlRTLLAESPDIVVTTPGR 159
                 67788899********9766665555444445778888************************99999855555555555555567889999****9999 PP

                 HHHTH........HHHTTT-SEEEEETG CS
      ResIII 114 ldadseeeeeeseellrdrfdviiiDEa 141
                 +++++     ++ +l+ +    ++iDEa
  KKY23581.1 160 ASQSL-----NNGSLSLQDLTHLVIDEA 182
                 99999.....333444444445666776 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.7e-05     0.059     172     209 ..     144     181 ..      77     188 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.7e-05
        CMS1 172 ylkksrigiavGtpgRildLleeeslsvdeLkrivlDa 209
                 +l +    i v tpgR  + l+++sls+++L+++v+D 
  KKY23581.1 144 TLLAESPDIVVTTPGRASQSLNNGSLSLQDLTHLVIDE 181
                 45555567899*************************96 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00041       1.5      13     114 ..      68     198 ..      63     213 .. 0.53
   2 ?    0.1   0.2      0.26   9.3e+02      76      76 ..     503     503 ..     409     582 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00041
      AAA_22  13 esGtGKTtllrrlleqldeeakaee...............erpevvfvtlpsstsskdllrellralglelka.......................... 70 
                  +G+GKT  ++  + q +   +a++               e              +++  +++++ +   + +                          
  KKY23581.1  68 KTGSGKTAAYALPVLQSVLIRQAATpktktttalvlvptrE--------------LAEQVHKVFSLFSAYCTKevrcvnltqkvsdavlrtllaespdi 152
                 68999999999887777666666665644444444444440..............55555555555555555555444444444444444443333333 PP

      AAA_22  71 erlsseellealeqalrarav.......ielliiDEaqh.lrs...eealeeLrs 114
                    +  +  + l+                  l+iDEa+  l s   ee +++L  
  KKY23581.1 153 VVTTPGRASQSLN-------NgslslqdLTHLVIDEADLvL-SygyEEDMQTL-A 198
                 1113333333333.......23334444788********77.65677777777.3 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.26
      AAA_22  76 e 76 
                 e
  KKY23581.1 503 E 503
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.53
# Mc/sec: 3418.33
//
Query:       KKY23582.1  [L=852]
Description: putative dna replication licensing factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.1e-100  335.4   0.0   1.6e-100  334.8   0.0    1.2  1  MCM           MCM P-loop domain
    6.8e-39  132.6   0.3    1.3e-38  131.7   0.3    1.4  1  MCM_OB        MCM OB domain
    8.4e-28   96.6   0.6    2.1e-27   95.4   0.6    1.7  1  MCM_lid       MCM AAA-lid domain
    5.9e-17   62.1   0.0    2.9e-16   59.9   0.0    2.3  1  MCM_N         MCM N-terminal domain
    5.4e-06   25.9   0.0    0.00013   21.4   0.0    2.5  2  Mg_chelatase  Magnesium chelatase, subunit ChlI
    4.3e-05   23.5   0.0    0.00013   22.0   0.0    1.9  1  AAA_5         AAA domain (dynein-related subfamily)
     0.0013   18.6   0.0     0.0037   17.1   0.0    1.7  2  AAA_3         ATPase family associated with various cellular 
  ------ inclusion threshold ------
       0.13   11.9   0.1       0.35   10.6   0.1    1.6  1  DSX_dimer     Doublesex dimerisation domain
       0.63   10.6   2.4       0.71   10.5   0.5    2.1  2  ATP-cone      ATP cone domain


Domain annotation for each model (and alignments):
>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.8   0.0    8e-104  1.6e-100       2     224 .]     412     636 ..     411     636 .. 0.98

  Alignments for each domain:
  == domain 1  score: 334.8 bits;  conditional E-value: 8e-104
                 HHHHHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSB..BCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSS CS
         MCM   2 veeikelakekdiieklvksiapsiyghedvkkaillqlfggvkkkledktk..lrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaagLt 98 
                 +e+i+ + +++d++e l++s+apsiy+++dvkk+illqlfgg++k+ +++ +  +rgdin+ll+gdp+t+KsqlL yv+++apr+vytsgkgssa+gLt
  KKY23582.1 412 KEKIEATGRRPDVYELLARSLAPSIYEMDDVKKGILLQLFGGTNKTFQKGGSpkYRGDINILLCGDPSTSKSQLLTYVHRIAPRGVYTSGKGSSAVGLT 510
                 68999****************************************999976555********************************************* PP

                 SEEEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--SSSSCCTTS-HHHHSSSSHHHHHH CS
         MCM  99 aavvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpkagrydkkksvaeninlsaalLsr 197
                 a+v+rd+e++++vle+Galvl+d+GvcciDefdkm+e++rs+lhE+mEqqt+siaKaGi++tLnarts+la+anp+++ry+++ +v +ni+l+++lLsr
  KKY23582.1 511 AYVTRDPESRQLVLESGALVLSDGGVCCIDEFDKMNESTRSVLHEVMEQQTVSIAKAGIITTLNARTSILASANPIGSRYNPNLPVPQNIDLPPTLLSR 609
                 *************************************************************************************************** PP

                 SSEEEEE-SSTTHHHHHHHHHHHHHHH CS
         MCM 198 FDlifvllDkvdeekDeelaehivslh 224
                 FDl++++lD+vde++D++la+h+v ++
  KKY23582.1 610 FDLVYLVLDRVDESNDRRLAKHLVGMY 636
                 ***********************9876 PP

>> MCM_OB  MCM OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.7   0.3   6.3e-42   1.3e-38       2     125 ..     222     350 ..     221     351 .. 0.97

  Alignments for each domain:
  == domain 1  score: 131.7 bits;  conditional E-value: 6.3e-42
                 XGG--GGGTTSEEEEEEEEEEE---EEEEEEEEEEETTT-.-EEE.....S----SB-..TTT-HHH-EEE-GGGSEEEEEEEEEEE------------ CS
      MCM_OB   2 lRdlrsehigklvkveGivtrasevkpklkkavfeckkcgktvev.....eleePrkCeekeCeskdpfkletekskfvdfqklklQEspeevpaGelP 95 
                 +Rdl+ ++++klv+++G+v+ra+ + p++k a+f+c+ c++tv+v     ++ eP+ C++++C sk+++++++++s+f d+q +klQE+p++vp G++P
  KKY23582.1 222 MRDLDPQDMDKLVSIKGLVIRATPIIPDMKDAFFKCTVCEHTVKVdidrgKIAEPTICPRRACASKESMRIVHNRSTFADKQIIKLQETPDNVPDGQTP 320
                 8*******************************************8778888888********************************************* PP

                 -EEEEEEEGGGTT---TT-EEEEEEEEEEE CS
      MCM_OB  96 rslevileddlvdkvkPGdrvevtGiyral 125
                 +s++++++d+lvd +k+Gdr+ vtGi+r++
  KKY23582.1 321 HSVSLCVYDELVDFCKAGDRILVTGIFRSN 350
                 ***************************976 PP

>> MCM_lid  MCM AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.6     1e-30   2.1e-27       1      86 [.     653     741 ..     653     742 .. 0.93

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 1e-30
                 HHHHHHHHHHHHTT--BETCHHHHHHHHHHHHHHHHH....TSSTSSSST--HHHHHHHHHHHHHHHHHHTSSSE-HHHHHHHHHHHHHH CS
     MCM_lid   1 ellrkYiayarekikPklseeakeklseaYvelRkee....edskrksipitvRqLesliRLseAlAklrlsevvteedveeairllkes 86 
                 ++l++Yi+yar++++P+ls++a+++l++ Yv+lR       + s++++i++t+RqLes+iRLseA+Ak+rls++v++ dv+ea+rl+k++
  KKY23582.1 653 DFLTAYITYARANYHPTLSPTARQALVDSYVSLRGLGagdlR-SSDRRITATTRQLESMIRLSEAHAKMRLSRTVETLDVNEAVRLIKSA 741
                 589********************************9966632.47999***************************************986 PP

>> MCM_N  MCM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0   1.5e-19   2.9e-16       1      87 [.      51     162 ..      51     243 .. 0.82

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 1.5e-19
       MCM_N   1 qekFedFLeefk...............ddsededgekkYrdqlqemaerekttLevdlddLaafde..eLaeailenpkeylplleealkevvkkleps 82 
                 +++F++FL ++                ++    ++e+ Y+ +lq+m++ + t L++d+++L+a+    +L+++i+ +p+e++pl+++ lke + +l+ +
  KKY23582.1  51 MNAFRSFLFNYArkyrmwadgaseaetSALGAAADEREYLGKLQKMLDLGVTGLNLDIKNLKAYPAtlKLWHQIVAYPQEMVPLMDQTLKEAMMDLAAQ 149
                 589********9999999877776666444455566****************************9989***************************9998 PP

       MCM_N  83 ykdd........a 87 
                  +++        a
  KKY23582.1 150 KMEQqrsrrqreA 162
                 7776333333330 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.087   1.7e+02      21      48 ..     468     495 ..     466     507 .. 0.89
   2 !   21.4   0.0   6.4e-08   0.00013      98     159 ..     525     586 ..     519     598 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.087
  Mg_chelatase  21 GgHnlllvGppGsGKtmlakrlpsllpp 48 
                   G  n+ll+G p + K+ l + ++ + p+
    KKY23582.1 468 GDINILLCGDPSTSKSQLLTYVHRIAPR 495
                   7789**************9999999886 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 6.4e-08
  Mg_chelatase  98 kpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpc 159
                   + G++ l+  Gv  +DE+ ++++++  vL e +e+++v+i++a   ++  ar+ ++a++Np 
    KKY23582.1 525 ESGALVLSDGGVCCIDEFDKMNESTRSVLHEVMEQQTVSIAKAGIITTLNARTSILASANPI 586
                   679999******************************************************96 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   6.6e-08   0.00013       2     124 ..     472     587 ..     471     610 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 6.6e-08
                 EEEE--SSSSHHHHHHHGGGGBS--EEEE.E--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-S CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyv.qltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeg 99 
                 +lL G+p t Ks+l  ++ +   r v +   +++    +     r++++++ +l+ ++lv     g ++++DE+++++ ++ ++L+ ++e++++++++ 
  KKY23582.1 472 ILLCGDPSTSKSQLLTYVHRIAPRGVYTSgKGSSAVGLTA-YVTRDPESRQLVLESGALV--LSDGGVCCIDEFDKMNESTRSVLHEVMEQQTVSIAKA 567
                 6777777788888777777777443333202222222222.2345556788889999999..99*******************************9999 PP

                 SSEEE---......-EEEEEESS-- CS
       AAA_5 100 gelvkaknddllerfrviatanpld 124
                 g  +  ++      ++++a+anp  
  KKY23582.1 568 GIITTLNAR-----TSILASANPIG 587
                 999888876.....89999999877 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       4.6   9.1e+03      16      39 ..     293     316 ..     290     322 .. 0.78
   2 !   17.1   0.0   1.9e-06    0.0037      48     122 ..     516     595 ..     503     601 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.6
       AAA_3  16 vkalakaldlefkriqftpdllPs 39 
                 v++ ++  d ++ ++q tpd +P 
  KKY23582.1 293 VHNRSTFADKQIIKLQETPDNVPD 316
                 55566677888999999**99985 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 1.9e-06
       AAA_3  48 eekekefefkkGpvfan...llladeinrappktqsalleameerqvtvege..thklpepflvlatqnPieqeGtyplp 122
                 + +++++ +++G+++ +   +   de ++ +  t+s l e+me+++v+++++   ++l+    +la  nPi ++   +lp
  KKY23582.1 516 DPESRQLVLESGALVLSdggVCCIDEFDKMNESTRSVLHEVMEQQTVSIAKAgiITTLNARTSILASANPIGSRYNPNLP 595
                 455688888888876433448999***********************9987622679**************987666666 PP

>> DSX_dimer  Doublesex dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00017      0.35      15      42 ..     125     154 ..     120     168 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00017
   DSX_dimer  15 lGyPWemmPlmyvilksadGdv..qkahqr 42 
                 + yP em+Plm   lk a  d+  qk  q+
  KKY23582.1 125 VAYPQEMVPLMDQTLKEAMMDLaaQKMEQQ 154
                 57***************9777522666554 PP

>> ATP-cone  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.5   0.00036      0.71       2      49 ..     373     420 ..     372     427 .. 0.92
   2 ?   -3.0   0.1       5.9   1.2e+04      42      61 ..     716     735 ..     699     749 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00036
                 EEE-TTS-EEE--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHI CS
    ATP-cone   2 kViKRdGtvepfdvekIkraiekAcegseeeideiaeeveaevrkrlr 49 
                 +++K d+++  +dv+ +++ ++ A+ g+ e+ ++i+ee  ++++  +r
  KKY23582.1 373 HIQKTDKRKMGIDVSTVEQEVSEAATGEAEQTRKITEEEKEKIEATGR 420
                 89************************************9999987765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.9
                 HHHHHHHIIT-BHHHHHHHH CS
    ATP-cone  42 aevrkrlrdgisteeIqdlv 61 
                 a+++ rl ++++t ++ + v
  KKY23582.1 716 AHAKMRLSRTVETLDVNEAV 735
                 45555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (852 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       933  (0.0520386); expected 358.6 (0.02)
Passed bias filter:                      728  (0.0406046); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 5399.84
//
Query:       KKY23583.1  [L=1799]
Description: putative chromosome segregation protein suda [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-58  195.9   3.2    2.5e-54  184.0   1.8    2.4  2  SMC_N         RecF/RecN/SMC N terminal domain
    3.5e-34  117.4   3.5    7.9e-34  116.2   3.5    1.6  1  CBM_21        Carbohydrate/starch-binding module (family 21)
    3.4e-31  108.0   0.2    1.8e-30  105.6   0.1    2.4  2  SMC_hinge     SMC proteins Flexible Hinge Domain
    1.4e-12   48.1  10.8    6.1e-06   26.2   0.5    4.1  4  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
      4e-08   33.7   4.0      1e-07   32.4   4.0    1.7  1  CBM53         Starch/carbohydrate-binding module (family 53)
     0.0035   17.4   1.3     0.0035   17.4   1.3    8.5  7  HR1           Hr1 repeat
     0.0076   16.6   2.8     0.0076   16.6   2.8    7.3  9  FlaC_arch     Flagella accessory protein C (FlaC)
     0.0076   16.8  16.1     0.0076   16.8  16.1    8.5  5  APG6_N        Apg6 coiled-coil region
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.028   14.1   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
      0.026   14.5   0.7       0.19   11.8   0.7    2.6  1  VGPC1_C       C-terminal membrane-localisation domain of ion-
      0.031   14.0  48.0     0.0037   17.0  14.5    4.7  1  AAA_15        AAA ATPase domain
       0.26   11.4   1.6         13    6.0   0.1    4.1  2  PspB          Phage shock protein B
       0.47    9.8   0.0       0.47    9.8   0.0    3.1  3  FtsK_SpoIIIE  FtsK/SpoIIIE family
       0.67   10.5   0.0       0.67   10.5   0.0    5.8  3  ABC_tran      ABC transporter
        1.6    9.2 110.3        1.3    9.4  49.2    7.1  3  AAA_23        AAA domain


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.0   1.8   2.1e-57   2.5e-54      12     190 ..     585    1725 ..     580    1738 .. 0.99
   2 !   10.8   0.0    0.0002      0.24     188     216 ..    1749    1777 ..    1742    1780 .. 0.84

  Alignments for each domain:
  == domain 1  score: 184.0 bits;  conditional E-value: 2.1e-57
                  TEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   12 syagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkge 108 
                   y+++tvi pfs+++++ivG+NGSGKsn++ Ai+FvL+ ++++++ +e+ ++l+h+  ++++v++a+vei+fdn+d ++++ k+e+ ++r++  k++
  KKY23583.1  585 AYREQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRFVLS-DAYTQMGREERQALLHE-GSGSAVMSAYVEIIFDNTDGRFPTGKDELILRRTIGLKKD 679 
                  5999**********************************.5888************9.9*************************************99 PP

                  EEEEETTEEE-HHHHHHHHHCTT-STT...................................................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx...................................................................... RF
       SMC_N  109 seykingkevtkkevsellesagiske...................................................................... 135 
                   ey ++ k++tk++v++llesag+s++                                                                      
  KKY23583.1  680 -EYSLDHKNATKADVMNLLESAGFSRSnpyyivpqgrvtaltnmrdserlvllkevagtqvyearrmeslrimnetnnkrtkidelleyigerldel 775 
                  .************************************************************************************************ PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY23583.1  776 eeeknelrdfevkdserkaleytlfhteqqkvnaelasiedmrqngldssdeqrekfleaeqtlantnvqiaelkqqmeflkvdraqlemerkeaak 872 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY23583.1  873 araqielevknlvdnqaaaeqakarqeldlrkvaaaikeresllddllpeykkhcaeeaqakaaldeaetarqrlyskqgrnsrfksknerdqwlrn 969 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY23583.1  970 qiddtntslstikavnmqnaediqeleneisevnteieslreqlegrsdrmqgidesiqqakesrdklmdqrkelwreearldsvlsnaqselekae 1066
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY23583.1 1067 rslshmmdsttsrglasvrrikrqlkldgvygtlaelidvperyrtavevtagnslfhyvvdndetatkllkelaaqkagrvtimplnrlkpnvpti 1163
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY23583.1 1164 pkandvipmierikydklhekavqqvfgksiicpnlttaaqyarshnlsavtpegdrsdkkgaltggfhdsrssrlqgvrnvqrwrddledkqsraa 1260
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY23583.1 1261 eirdqlvlldqqitkfvgevqkleqrkqqtngnqgplrqelksklelsrkqkdtleeklrskarvdanvrelsaqqnahqtelgtefkktltdaeek 1357
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY23583.1 1358 qlehltasmqglraeyskcsklrselesrkkilevelndnyrplleqlendraddaatgdsgtlkdrqrhlkrmtstlsdldsrlqeieasldkdts 1454
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY23583.1 1455 nvaeleaetadirreqeeraknierqqrrmaksgqmkavlqarareltndtihlgpvnqellskfkqmssenvakrlhktrealkkyshvnkkaleq 1551
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KKY23583.1 1552 yssftkqkeqlvdrreeldasqksiedlievldqrkdeaiertfkqvsrefaiifeklvpagkgrliiqrkadrragdeledeeedvpgrkkdsgve 1648
                  ************************************************************************************************* PP

                  ......................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTS CS
                  ......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 ......................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskna 190 
                                        +LSgG+k+L+al L+fAiq+++pap+yl+Deida+LD++++++va+ l++ s++a
  KKY23583.1 1649 nytgvgiavsfnskhddqqriqQLSGGQKSLCALTLIFAIQACDPAPFYLFDEIDANLDAQYRTAVAQHLHSLSQKA 1725
                  ***********************************************************************999765 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0002
                  TTSEEEEE-SSHHHCCC-SCEEEEEEEET CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  188 knaQfivislreemlekadklvgvtkven 216 
                  ++ Qfi++++r em+  a+k++gv+++++
  KKY23583.1 1749 TSGQFICTTFRPEMVLVAEKCYGVSFEKK 1777
                  568**********************9554 PP

>> CBM_21  Carbohydrate/starch-binding module (family 21)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   3.5   6.6e-37   7.9e-34       6     113 .]     247     354 ..     242     354 .. 0.97

  Alignments for each domain:
  == domain 1  score: 116.2 bits;  conditional E-value: 6.6e-37
      CBM_21   6 kvllerlelskdkkvlvGlvaVknlafeKavavrytldnWktilevpaeyvksaeeslkenntdrFkFkiklknllnsekaklelcikYevneeeyWdn 104
                 ++ +er++ls dkk l+G+vaV+nlaf+Kav  r+t+d Wkt++ev+aey+++++++++++ +drF+F+i+ ++  n e+++l +c++Y+vn++e+Wdn
  KKY23583.1 247 PIRVERVFLSADKKNLIGQVAVQNLAFHKAVVARFTFDYWKTTSEVSAEYNNDIRRKQAHDGCDRFNFTIRITDIGNLENKTLFFCVRYNVNGQEFWDN 345
                 799************************************************************************************************ PP

      CBM_21 105 NegkNYevk 113
                 N+  NY+v+
  KKY23583.1 346 NNFINYQVD 354
                 *******95 PP

>> SMC_hinge  SMC proteins Flexible Hinge Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6   0.1   1.5e-33   1.8e-30       2     117 .]    1094    1206 ..    1093    1206 .. 0.97
   2 ?   -2.7   0.0       6.1   7.2e+03      13      29 ..    1705    1721 ..    1704    1744 .. 0.79

  Alignments for each domain:
  == domain 1  score: 105.6 bits;  conditional E-value: 1.5e-33
   SMC_hinge    2 kgvlGrladlievdegyekAveaalgnrlqalvvedeetakkiieflkkknagratflpldrikqknkadgandknsgavplidlvevddelrkalr 98  
                   gv+G+la+li v+e+y++Ave+ +gn+l++ vv+++eta+k+++ l +++agr+t++pl+r+k++ ++  + +    + p+i+ +++d+ ++ka++
  KKY23583.1 1094 DGVYGTLAELIDVPERYRTAVEVTAGNSLFHYVVDNDETATKLLKELAAQKAGRVTIMPLNRLKPNVPTIPKAN---DVIPMIERIKYDKLHEKAVQ 1187
                  69****************************************************************99988887...7******************* PP

   SMC_hinge   99 yllgdtlvvdsldeAeela 117 
                  +++g+ +++++l +A ++a
  KKY23583.1 1188 QVFGKSIICPNLTTAAQYA 1206
                  ***************9985 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.1
   SMC_hinge   13 evdegyekAveaalgnr 29  
                  ++d +y++Av++ l + 
  KKY23583.1 1705 NLDAQYRTAVAQHLHSL 1721
                  67889999999988765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.4e-08   1.7e-05       2      26 ..     600     629 ..     600     690 .. 0.70
   2 ?   -3.0   0.2       4.3   5.1e+03     157     205 ..     966    1012 ..     944    1065 .. 0.58
   3 ?    1.1   0.1      0.24   2.9e+02     120     202 ..    1317    1397 ..    1297    1430 .. 0.79
   4 !   26.2   0.5   5.1e-09   6.1e-06     176     296 ..    1610    1757 ..    1497    1757 .. 0.57

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.4e-08
      AAA_21   2 nvliGpNgsGKSnLLdaldllarl.....d 26 
                 nv++G+NgsGKSn++ a++++ +       
  KKY23583.1 600 NVIVGRNGSGKSNFFAAIRFVLSDaytqmG 629
                 8*******************9874444440 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.3
      AAA_21  157 lldglrkerigllnifadyfgfakekrllqrlvrslklveielsdlgeg 205 
                  +l+++   +  + +++   +  + + + +q+l++++++v+ e++ l+e+
  KKY23583.1  966 WLRNQI--DDTNTSLSTIKAVNMQNAEDIQELENEISEVNTEIESLREQ 1012
                  333333..45555555555555555555555555555555555555433 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.24
      AAA_21  120 ggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrkerigllnifadyfgfakekrllqrlvrslklveielsdl 202 
                  + ++++ +   +v e +++q+ +++ + t+++ +l +  ++++  +++++++++  + ++k+ +l+++l+++ k  e el d+
  KKY23583.1 1317 EKLRSKARVDANVRELSAQQNAHQTELGTEFKKTLTDAEEKQL--EHLTASMQGLRAEYSKCSKLRSELESRKKILEVELNDN 1397
                  5556666777788899999999999999999999999999999..99999999999999999999999999999999888776 PP

  == domain 4  score: 26.2 bits;  conditional E-value: 5.1e-09
      AAA_21  176 fgfakekrllqrlvrslklveielsdlgegeeliasvderlrer.....................gvvflengdgqelparelSdGtkrllalltal 251 
                  ++  k + ++qr  +++  +e+e                                            v +  +++ +  + +lS G+k+l al +++
  KKY23583.1 1610 VPAGKGRLIIQRKADRRAGDELE--------------------DeeedvpgrkkdsgvenytgvgIAVSFNSKHDDQQRIQQLSGGQKSLCALTLIF 1686
                  22222222222222222222222....................1222222223344556688999*************************6444433 PP

      AAA_21  252 .lralkkgsllliDEpEngLHPkllrrllellkelsr.........................ngaQviltT 296 
                   ++a+++++++l+DE++++L+ +  + +++ l +ls+                         + +Q+i+tT
  KKY23583.1 1687 aIQACDPAPFYLFDEIDANLDAQYRTAVAQHLHSLSQkatlsstqrtqnndddddeqqnetpTSGQFICTT 1757
                  04455566**************9999999888444444456666667778888888888888888888888 PP

>> CBM53  Starch/carbohydrate-binding module (family 53)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   4.0   8.7e-11     1e-07       3      80 ..     271     354 ..     264     355 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 8.7e-11
       CBM53   3 vyYnkslakevtlhygfngWkssqdvamtks....assgdseedwfeatvtvpkea....seldfvfds..egeenWDNNngqnYkvp 80 
                 ++++k+    v ++++f+ Wk++++v +++     +++  ++ d+f +t+ + +      ++l f++ +  +g+e+WDNNn  nY+v+
  KKY23583.1 271 LAFHKA----VVARFTFDYWKTTSEVSAEYNndirRKQAHDGCDRFNFTIRITDIGnlenKTLFFCVRYnvNGQEFWDNNNFINYQVD 354
                 444444....6********************999966778889*********996578756699***4469**************985 PP

>> HR1  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   3.1     0.048        58      30      63 ..     825     858 ..     811     864 .. 0.74
   2 ?   -1.9   0.4       3.2   3.8e+03      18      41 ..     872     901 ..     860     910 .. 0.47
   3 !   17.4   1.3   2.9e-06    0.0035      29      66 ..     983    1021 ..     967    1024 .. 0.84
   4 ?   -0.3   0.6      0.97   1.2e+03      36      52 ..    1054    1070 ..    1028    1077 .. 0.81
   5 ?    0.6   0.7      0.53   6.3e+02      31      64 ..    1356    1389 ..    1347    1393 .. 0.75
   6 ?    2.8   2.6       0.1   1.2e+02      27      60 ..    1406    1451 ..    1391    1458 .. 0.77
   7 ?   -1.7   2.8       2.7   3.2e+03      20      63 ..    1546    1588 ..    1535    1592 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.048
         HR1  30 ktqnkkvrqeaeselsesnskielLreqLeelqa 63 
                 +  +++   eae++l   n  i++L++q+e l+ 
  KKY23583.1 825 SDEQREKFLEAEQTLANTNVQIAELKQQMEFLKV 858
                 3445557889******************998775 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.2
         HR1  18 GAenllrale......sk.ktqnkkvrqeae 41 
                  A   ++ le      ++ +  + k+rqe +
  KKY23583.1 872 KARAQIE-LEvknlvdNQaAAEQAKARQELD 901
                 4444444.23222222444444455555554 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 2.9e-06
         HR1   29 k.ktqnkkvrqeaeselsesnskielLreqLeelqasvq 66  
                    ++qn + +qe e+e+se n++ie LreqLe + ++ q
  KKY23583.1  983 AvNMQNAEDIQELENEISEVNTEIESLREQLEGRSDRMQ 1021
                  337999**************************9888766 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.97
         HR1   36 vrqeaeselsesnskie 52  
                  v++ a+sel+++++ ++
  KKY23583.1 1054 VLSNAQSELEKAERSLS 1070
                  89999999999999876 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.53
         HR1   31 tqnkkvrqeaeselsesnskielLreqLeelqas 64  
                  +++ +++ +  + l+   sk++ Lr++Le +++ 
  KKY23583.1 1356 EKQLEHLTASMQGLRAEYSKCSKLRSELESRKKI 1389
                  4455577777888999999*********999885 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.1
         HR1   27 e...........sk.ktqnkkvrqeaeselsesnskielLreqLee 60  
                  e           s+  ++ ++++ +  s+ls+ +s++++++ +L +
  KKY23583.1 1406 EndraddaatgdSGtLKDRQRHLKRMTSTLSDLDSRLQEIEASLDK 1451
                  455555555555665667778********************99965 PP

  == domain 7  score: -1.7 bits;  conditional E-value: 2.7
         HR1   20 enllraleskktqnkkvrqeaeselsesnskielLreqLeelqa 63  
                  ++ l++++s  t++k+++ +   el+ s++ ie L e L ++++
  KKY23583.1 1546 KKALEQYSS-FTKQKEQLVDRREELDASQKSIEDLIEVLDQRKD 1588
                  566777776.588889999999**********999888877765 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       7.6   9.1e+03      15      26 ..     771     782 ..     758     788 .. 0.58
   2 ?    1.1   0.9      0.45   5.3e+02       6      28 ..     836     858 ..     831     886 .. 0.59
   3 ?   -1.7   0.0       3.4   4.1e+03       7      28 ..     969     990 ..     967     993 .. 0.77
   4 !   16.6   2.8   6.3e-06    0.0076       2      38 ..     992    1028 ..     991    1039 .. 0.93
   5 ?    0.4   0.2      0.72   8.6e+02       5      28 ..    1051    1074 ..    1043    1078 .. 0.63
   6 ?   -3.1   0.1       8.9   1.1e+04      20      39 ..    1256    1275 ..    1249    1283 .. 0.52
   7 ?   -0.1   0.2       1.1   1.3e+03       6      33 ..    1356    1383 ..    1352    1392 .. 0.82
   8 ?    3.6   1.7     0.074        89       1      37 [.    1441    1477 ..    1428    1484 .. 0.87
   9 ?   -2.7   0.4         7   8.4e+03      20      42 ..    1559    1581 ..    1549    1585 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.6
   FlaC_arch  15 eletvkkeneel 26 
                 +l+ +++e +el
  KKY23583.1 771 RLDELEEEKNEL 782
                 444444444444 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.45
   FlaC_arch   6 Enklsklsteletvkkeneelsk 28 
                 E+ l ++ ++++ +k+++e l+ 
  KKY23583.1 836 EQTLANTNVQIAELKQQMEFLKV 858
                 66666666666666666665543 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 3.4
   FlaC_arch   7 nklsklsteletvkkeneelsk 28 
                 n+++++ t+l+t+k+ n +  +
  KKY23583.1 969 NQIDDTNTSLSTIKAVNMQNAE 990
                 789999999**99998877655 PP

  == domain 4  score: 16.6 bits;  conditional E-value: 6.3e-06
   FlaC_arch    2 idelEnklsklsteletvkkeneelsksveelkenVk 38  
                  i+elEn++s++ te+e++++++e  s+  + ++e+++
  KKY23583.1  992 IQELENEISEVNTEIESLREQLEGRSDRMQGIDESIQ 1028
                  78*********************************96 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.72
   FlaC_arch    5 lEnklsklsteletvkkeneelsk 28  
                  l++ ls+ ++ele ++++++++ +
  KKY23583.1 1051 LDSVLSNAQSELEKAERSLSHMMD 1074
                  444556666666666666666555 PP

  == domain 6  score: -3.1 bits;  conditional E-value: 8.9
   FlaC_arch   20 kkeneelsksveelkenVkd 39  
                  ++   e+++++  l++++ +
  KKY23583.1 1256 QSRAAEIRDQLVLLDQQITK 1275
                  34444555555555555544 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 1.1
   FlaC_arch    6 Enklsklsteletvkkeneelsksveel 33  
                  E++l+ l  +++ +++e ++ sk   el
  KKY23583.1 1356 EKQLEHLTASMQGLRAEYSKCSKLRSEL 1383
                  89999999*********99988865555 PP

  == domain 8  score: 3.6 bits;  conditional E-value: 0.074
   FlaC_arch    1 ridelEnklsklsteletvkkeneelsksveelkenV 37  
                  r++e+E  l+k  ++++ +++e  +++ + ee  +n+
  KKY23583.1 1441 RLQEIEASLDKDTSNVAELEAETADIRREQEERAKNI 1477
                  7889999999999999999999999999888877776 PP

  == domain 9  score: -2.7 bits;  conditional E-value: 7
   FlaC_arch   20 kkeneelsksveelkenVkdlls 42  
                  k+++ + +++++  +++++dl++
  KKY23583.1 1559 KEQLVDRREELDASQKSIEDLIE 1581
                  33444444444444555666655 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1  10.2       4.4   5.3e+03      62     127 ..     743     812 ..     715     819 .. 0.60
   2 ?   -0.2   5.6       1.1   1.4e+03      41      83 ..     911     950 ..     898     967 .. 0.73
   3 !   16.8  16.1   6.4e-06    0.0076      23     129 ..     969    1072 ..     958    1076 .. 0.87
   4 !    7.0  14.8    0.0069       8.3      12     127 ..    1381    1499 ..    1376    1505 .. 0.81
   5 ?    0.6   8.4      0.62   7.5e+02      13      71 ..    1526    1584 ..    1513    1605 .. 0.43

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.4
      APG6_N  62 eeeelleeLkelekereeleaelaaleeelealeeeeer....fwreynelqlelleleeeldsleaqye 127
                  + e l+ ++e+ ++r ++++ l+ + e l++leee+++    ++++   ++le + ++ e+++++a+++
  KKY23583.1 743 RRMESLRIMNETNNKRTKIDELLEYIGERLDELEEEKNElrdfEVKDSERKALEYTLFHTEQQKVNAELA 812
                 4444444455666677777777777777766666665542221234444466666666666666666654 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.1
      APG6_N  41 eeekqdeeleeleeeleklekeeeelleeLkelekereeleae 83 
                 e    ++ l++l  e++k  +ee+++ + L+e+e++r++l ++
  KKY23583.1 911 ER---ESLLDDLLPEYKKHCAEEAQAKAALDEAETARQRLYSK 950
                 32...35677788889999999999999999999999988665 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 6.4e-06
      APG6_N   23 kerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeel 119 
                  +++d+ ++ l+++k+ + +   + e+++ele+e+++++ e e+l e+L+   +  + +++ +++++e  ++l ++ ++ wre   l+  l++ + el
  KKY23583.1  969 NQIDDTNTSLSTIKAVNMQ---NAEDIQELENEISEVNTEIESLREQLEGRSDRMQGIDESIQQAKESRDKLMDQRKELWREEARLDSVLSNAQSEL 1062
                  4555555556666655444...468************************************************************************ PP

      APG6_N  120 dsleaqyeha 129 
                  ++ e ++ h 
  KKY23583.1 1063 EKAERSLSHM 1072
                  **99998886 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0069
      APG6_N   12 eeldkqleqaeke.rdaYeeflkklkkekkeeek..qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwrey 105 
                  +el+++ + +e e  d+Y+  l++l++++ ++ +  +   l++ ++ l+++ ++ ++l + L+e+e+  ++  + +a+le+e++++ +e+e+  +  
  KKY23583.1 1381 SELESRKKILEVElNDNYRPLLEQLENDRADDAAtgDSGTLKDRQRHLKRMTSTLSDLDSRLQEIEASLDKDTSNVAELEAETADIRREQEERAKNI 1477
                  55555555565553599*********99777655887778888889999999999999999999999999999999999999999999999999999 PP

      APG6_N  106 nelqlelleleeeldsleaqye 127 
                    +q+ +++  + ++ l+a+ +
  KKY23583.1 1478 ERQQRRMAKSGQMKAVLQARAR 1499
                  9999999888888888887765 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.62
      APG6_N   13 eldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLk 71  
                  ++ k+l+++++  ++Y+   kk  ++ ++ +kq+e+l + +eel++ +k  e+l+e L+
  KKY23583.1 1526 NVAKRLHKTREALKKYSHVNKKALEQYSSFTKQKEQLVDRREELDASQKSIEDLIEVLD 1584
                  33333333333333333333333333333333333333333333333333333333333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.4e-05     0.028      18      47 ..     594     622 ..     586     627 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-05
      AAA_29  18 eidlkgatlltGpsGsGKSTllDAiqalLv 47 
                 ++++k   +++G++GsGKS ++ Ai ++L 
  KKY23583.1 594 PFSPKH-NVIVGRNGSGKSNFFAAIRFVLS 622
                 466666.89****************99996 PP

>> VGPC1_C  C-terminal membrane-localisation domain of ion-channel, VCN1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.7   0.00016      0.19       3      35 ..     978    1010 ..     976    1015 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00016
     VGPC1_C    3 lskLkqaNlqLaaKvqqLefscsEKeqeierLn 35  
                  ls +k +N+q a  +q Le   sE  +eie L 
  KKY23583.1  978 LSTIKAVNMQNAEDIQELENEISEVNTEIESLR 1010
                  8999**************************986 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   17.0  14.5   3.1e-06    0.0037      20     261 ..     594    1010 ..     586    1068 .. 0.51

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.1e-06
      AAA_15   20 dlseeltvliGkNnsGKSsilealdlFlnnkekkn..........................................kkvikiekedleifenises 74  
                  ++s++ +v++G+N+sGKS++  a+ + l+  +                                                                 
  KKY23583.1  594 PFSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTQMgreerqallhegsgsavmsayveiifdntdgrfptgkdelilR------------------- 671 
                  588889***********************8844449999999*********999999866555555555555555551................... PP

      AAA_15   75 kdikIdvef..................................................................aekekakeyektlkskekkkad 105 
                  ++i +++ +                                                                           ++++++++     
  KKY23583.1  672 RTIGLKKDEysldhknatkadvmnllesagfsrsnpyyivpqgrvtaltnmrdserlvllkevagtqvyearrmeS--------LRIMNETN----- 755 
                  4444443334555555555555555556666666666666666666666666666666665555444332222220........22222222..... PP

      AAA_15  106 lllkkkesdlkktikdkklklkknelsdekisvekkkskkelpkekeeklekekeel.kid...kedlkklikkleeslkkee.............. 184 
                       k+++l ++i ++  +l+++++    ++v++ + k   +++ + +++k ++el +i+   ++ l++  ++ e+ l+ e+              
  KKY23583.1  756 -NKRTKIDELLEYIGERLDELEEEKNELRDFEVKDSERKALEYTLFHTEQQKVNAELaSIEdmrQNGLDSSDEQREKFLEAEQtlantnvqiaelkq 851 
                  .222234444444444444444444444444444444333222222222222222220222222333333333333333333355555555553333 PP

      AAA_15  185 ..................................................................................elknvlksaiiklll 199 
                                                                                                    +      + +++ l+
  KKY23583.1  852 qmeflkvdraqlemerkeaakaraqielevknlvdnqaaaeqakarqeldlrkvaaaikeresllddllpeykkhcaeeaqaKAALDEAETARQRLY 948 
                  3333333333333333333333333333333333333333333333444444444444444444445555555555554433222222334555566 PP

      AAA_15  200 isakRnvsdedsekkssllgklkekileealqekl.eeelteklkeiqeklkeidkklaeelk 261 
                   +  Rn+  + +++ + +l +++++++ + +  k+ + ++ e+++e++++++e + +++ +l 
  KKY23583.1  949 SKQGRNSRFKSKNERDQWLRNQIDDTNTSLSTIKAvNMQNAEDIQELENEISEVNTEIE-SLR 1010
                  66666666666666666666666666665444333766666777777777777776663.333 PP

>> PspB  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.37   4.4e+02      32      53 ..    1348    1369 ..    1344    1372 .. 0.85
   2 ?    6.0   0.1     0.011        13      37      70 ..    1422    1455 ..    1414    1457 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.37
        PspB   32 skglsaedekrLeellekAekl 53  
                  +k+l++ +ek+Le+l+ + + l
  KKY23583.1 1348 KKTLTDAEEKQLEHLTASMQGL 1369
                  789************9987766 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.011
        PspB   37 aedekrLeellekAekleeRietLEriLdaespn 70  
                  ++ +++L++++ + + l++R++ +E+ Ld+++ n
  KKY23583.1 1422 KDRQRHLKRMTSTLSDLDSRLQEIEASLDKDTSN 1455
                  456889***********************99876 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00039      0.47      38      58 ..     596     616 ..     573     628 .. 0.78
   2 ?   -0.6   2.9      0.56   6.7e+02      97     163 ..     756     832 ..     734     911 .. 0.68
   3 ?   -4.1   0.5       6.8   8.1e+03     127     165 ..    1012    1050 ..     981    1066 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00039
                   S-.SEEEE--TTSSHHHHHHH CS
  FtsK_SpoIIIE  38 mashllvaGatgsGKStalnt 58 
                   ++ h +++G+ gsGKS++  +
    KKY23583.1 596 SPKHNVIVGRNGSGKSNFFAA 616
                   348**************9876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.56
                   S-B-SHHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHH.......HHHHHHHHHHTT...---B-TT-.......... CS
  FtsK_SpoIIIE  97 avatdperalraleeLvkemeeryalfreagvrsiaa.......ydgeiaedpldi...fgdvflvlDnyddlaaen 163
                   + +t +++ l+ + e ++e+ee ++ +r++ v+++++       ++ e +++++++   + +    lD  d+ ++++
    KKY23583.1 756 NKRTKIDELLEYIGERLDELEEEKNELRDFEVKDSERkaleytlFHTEQQKVNAELasiEDMRQNGLDSSDEQREKF 832
                   56788899999999999*****************9998888888444444444443000333344445444444444 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 6.8
                    T-SSHHHHHHHHHHHHHTT---B-TT-............ CS
  FtsK_SpoIIIE  127 gvrsiaaydgeiaedpldifgdvflvlDnyddlaaener 165 
                    + + +++  ++i e+++++++  + ++D  ++l  e++r
    KKY23583.1 1012 QLEGRSDRMQGIDESIQQAKESRDKLMDQRKELWREEAR 1050
                    233334445666666666666666666776666666663 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00056      0.67      15      34 ..     601     620 ..     595     697 .. 0.88
   2 ?   -2.5  10.0       5.7   6.8e+03      79     125 ..    1601    1688 ..    1260    1704 .. 0.79
   3 ?   -1.4   0.1       2.5     3e+03      49      80 ..    1706    1742 ..    1697    1776 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00056
                 EEEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagl 34 
                 +ivG+nG+GKS +++++   
  KKY23583.1 601 VIVGRNGSGKSNFFAAIRFV 620
                 79***********9999655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.7
                  H........................................HHHTCHHHHHHHSTTGG....................TTCBGESTTSGGS-HHHHH CS
                  x........................................xxxxxxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxx RF
    ABC_tran   79 n........................................esdeeiekalsklglke....................lkdtvvksspssLSgGqkq 115 
                  +                                        +               +                    ++++++    ++LSgGqk+
  KKY23583.1 1601 EfaiifeklvpagkgrliiqrkadrragdeledeeedvpgrK---------------KdsgvenytgvgiavsfnskhDDQQRI----QQLSGGQKS 1678
                  033333333333334443333344444444433333333321...............022233333333333322111455555....********* PP

                  HHHHHHHHHH CS
                  xxxxxxxxxx RF
    ABC_tran  116 rvalarallk 125 
                    al  +++ 
  KKY23583.1 1679 LCALTLIFAI 1688
                  9988665543 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.5
                  GGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.....H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....x RF
    ABC_tran   49 lkeqeleslrkeigvlpqepqlfpeltvren.....e 80  
                  l+ q ++ + +++  l+q+++l ++ + ++n     e
  KKY23583.1 1706 LDAQYRTAVAQHLHSLSQKATLSSTQRTQNNdddddE 1742
                  455668889999999****999999988888654321 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  49.2    0.0011       1.3      10     154 ..     586     880 ..     583    1074 .. 0.64
   2 ?   -2.0  20.0       3.5   4.2e+03      55     197 ..    1437    1581 ..    1411    1609 .. 0.50
   3 ?   -1.5   0.8       2.4   2.9e+03      89     143 ..    1630    1702 ..    1584    1748 .. 0.48

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0011
      AAA_23  10 frdqe.idF.skgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfenkdgry.................... 86 
                 +r+q+ i+  s++ ++I+G NG+GK+ ++ Ai+++L    ++++r+++  +  ++ +   ++  +ayve+ f n+dgr                     
  KKY23583.1 586 YREQTvIEPfSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTQMGREER-QALLHEGS--GSAVMSAYVEIIFDNTDGRFptgkdelilrrtiglkkdey 681
                 8888867554********************************999855.44455544..35688999**********9899988888888888888888 PP

      AAA_23  87 .........................................................trsiererelskkkg.kttkkaklellei.....deleqfis 122
                                                                           ++ +r+ +l+  ++ ++++ ++ elle      dele++ +
  KKY23583.1 682 sldhknatkadvmnllesagfsrsnpyyivpqgrvtaltnmrdserlvllkevagtqVYEARRMESLRIMNEtNNKRTKIDELLEYigerlDELEEEKN 780
                 888888888888888888888888888888888888888888888888888888888444444333333222123333333333333334433333322 PP

      AAA_23 123 e....llgskki.ilnlilflgqer..............feefelkdkke................................................. 153
                 e    +++ +++  l++ lf+ +++              +                                                           
  KKY23583.1 781 ElrdfEVKDSERkALEYTLFHTEQQkvnaelasiedmrqN---------Gldssdeqrekfleaeqtlantnvqiaelkqqmeflkvdraqlemerkea 870
                 2333434433333557777777777444444444333330.........03333333343333444444455533333333334434333333333333 PP

      AAA_23 154 .........r 154
                          +
  KKY23583.1 871 akaraqielE 880
                 3333333330 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.5
      AAA_23   55 grgfeksdveiesegkvkayveltfenkdgry.....trsiererelskkkgkttkkaklelleideleqfisellgskkiilnlilflgqer.... 142 
                  + ++  +++e + ++++++++el+ e+ d r+      ++ier++ +  k+g   ++++  + + +el++ + +l  ++++ l+ +  + +e+    
  KKY23583.1 1437 DLDSRLQEIEASLDKDTSNVAELEAETADIRReqeerAKNIERQQRRMAKSG---QMKAVLQARARELTNDTIHLGPVNQELLSKFKQMSSENvakr 1530
                  3445556666666788888899997776666555555666666666655554...445555555555555555555555554444444444442222 PP

      AAA_23  143 .....feefel....kdkkerleelekeleeledekkllekleqekekekeleeleeeleeilk 197 
                       ++ ++     k+ +e+  +++k++e+l d++++l++              ++ +e++++
  KKY23583.1 1531 lhktrEALKKYshvnKKALEQYSSFTKQKEQLVDRREELDAS-------------QKSIEDLIE 1581
                  221112222224344444445555566666666666555555.............333333222 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.4
      AAA_23   89 siererelskkkgkttkkaklellei.......deleqfisellgskki..ilnlilflgqer.........f 143 
                  ++e+e e   + +k    ++  +++i        + +q+i++l g +k+   l+li+ +++ +          
  KKY23583.1 1630 ELEDEEEDVPGRKKDSGVENYTGVGIavsfnskHDDQQRIQQLSGGQKSlcALTLIFAIQACDpapfylfdeI 1702
                  3444444444444444444444444455666666778889998888888888888888888886665553331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1799 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2262  (0.126164); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                       132  (0.00736237); expected 17.9 (0.001)
Passed Fwd filter:                        68  (0.00379274); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 2.18u 0.42s 00:00:02.60 Elapsed: 00:00:00.74
# Mc/sec: 7361.69
//
Query:       KKY23584.1  [L=1222]
Description: hypothetical protein UCRPC4_g02847 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.52
# Mc/sec: 7008.59
//
Query:       KKY23585.1  [L=298]
Description: putative kinetochore protein fta4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-55  185.7   1.7    1.2e-54  185.3   1.7    1.1  1  FTA4      Kinetochore complex Fta4 of Sim4 subunit, or CENP-5


Domain annotation for each model (and alignments):
>> FTA4  Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.3   1.7   6.7e-59   1.2e-54       1     199 [.       6     215 ..       6     216 .. 0.90

  Alignments for each domain:
  == domain 1  score: 185.3 bits;  conditional E-value: 6.7e-59
        FTA4   1 tilelKqsfldtqvriLsqPLapsrewrsaneeeeendeelsekavddvLaklNhrlkqhnrrvyspqairhvaeQidklYlea.............ed 86 
                 t++e K++fl++q+r+Ls  L+ps++wr+++ + ee +  ls+k+v+dv++k+N+++kqhnr vys+  +rhvaeQid lY+++             e+
  KKY23585.1   6 TVVEAKTAFLRQQIRLLSATLQPSSQWRDNAPAIEEPE--LSDKVVEDVINKVNAKIKQHNRLVYSAASTRHVAEQIDVLYWNSvseggigsaetdfES 102
                 7999******************************9876..**********************************************9999877654444 PP

        FTA4  87 ekleievnedltkeelIkeLPeswe....veekeaeeepleallerYaelrarLielserrqqlqarlarlrklkallepflgsedpqesvqenlvtrd 181
                   l +++ +dlt+ee+ ++LP + e     + ++++ ++  +  + Y +  +rL +l++r ++ q++l++l+ lkallep+   ++pq+++q+nlvtr+
  KKY23585.1 103 GLLPVKKTTDLTDEESLSSLPSNLEqlipADSSSSQPYT-PSDSAAYSTALTRLSSLHARHTAIQNKLNQLKALKALLEPY---KEPQKNMQPNLVTRN 197
                 444447*****************9988863333444433.3446*************************************...9************** PP

        FTA4 182 geleaElermRvLlarva 199
                 g+l +El+rmRvL+arv+
  KKY23585.1 198 GDLGKELDRMRVLIARVT 215
                 ****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 1869.50
//
Query:       KKY23586.1  [L=274]
Description: putative epoxide [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-08   32.5   0.0    1.6e-07   31.6   0.0    1.5  1  HAD_2           Haloacid dehalogenase-like hydrolase
    9.9e-06   26.0   0.0    1.3e-05   25.6   0.0    1.3  1  Hydrolase       haloacid dehalogenase-like hydrolase
     0.0002   21.3   0.0    0.00034   20.6   0.0    1.3  1  Hydrolase_like  HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   2.7e-11   1.6e-07     116     178 .]     169     240 ..     126     240 .. 0.91

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 2.7e-11
       HAD_2 116 lgiesyFdvivtsedvekkKPdpeviekalekl.........klkkeeviyvGDsptDieaakkagikviav 178
                  ++ ++Fd  v+s +v+ +KPd +++e +l+kl         +l++++v++  D    ++aa++ag+++i v
  KKY23586.1 169 EDVRNMFDLFVSSAHVGMRKPDSKIYEYTLQKLaelvgrrgeQLQAKDVVFLDDIGENLKAARNAGMRTIRV 240
                 56789****************************************************************986 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   2.1e-09   1.3e-05      67     210 .]      78     234 ..       7     234 .. 0.69

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2.1e-09
                 E...............HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHT.TEEEEEEESSEHHHHH CS
                 x...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
   Hydrolase  67 g...............ayaigkpewltaldippdlgaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaa.gievvlltgdnpetae 149
                                 a   g+pe + +l        a ++   +g++ +++      + +++ +  + p +  a+++Lka  ++ v+ l++    ++ 
  KKY23586.1  78 PqmwqafqarlqatskASKHGNPEVTWSL--------AKSQPRIDGEDLFWK------MMAASRS--PDPNIYPALKHLKASkKFVVAALSNTVIFPQG 160
                 03333333333666667777777777777........555566666666666......7788888..*************9956689999999998888 PP

                 HHHHHTT....GGGESEEEEHHCESSTTTSHHHHHHHHHHHT.........STGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 150 raanqlG....ddyfdaviasdietvakpspegkvaaireLq.........gkpeevamVGDgvnDaaalaaAg 210
                 +  n +G    ++ fd  ++s  ++  kp+ +++++++++L           + ++v++ +D    ++a+++Ag
  KKY23586.1 161 HPYNTAGqedvRNMFDLFVSSAHVGMRKPDSKIYEYTLQKLAelvgrrgeqLQAKDVVFLDDIGENLKAARNAG 234
                 *********999999**************************55555665558899*****************98 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   5.7e-08   0.00034       2      59 ..     186     251 ..     185     260 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 5.7e-08
                     .STTSSHHHHHHHHHH.........---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHH CS
  Hydrolase_like   2 lgKPepemydfalevl.........gsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedle 59 
                     ++KP   +y++ l++l         +++ ++v++  D     +++A+naG++++ V  G+t+++ ++
      KKY23586.1 186 MRKPDSKIYEYTLQKLaelvgrrgeQLQAKDVVFLDDI-GENLKAARNAGMRTIRVVLGKTDDAVRQ 251
                     69**************9999888877779999999888.**********************997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1936.60
//
Query:       KKY23587.1  [L=284]
Description: putative phosphotransferase enzyme family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.8e-19   68.2   0.0    1.5e-18   67.7   0.0    1.2  1  APH             Phosphotransferase enzyme family
    2.5e-05   24.0   0.0    3.8e-05   23.4   0.0    1.2  1  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   1.6e-22   1.5e-18      25     210 ..      34     235 ..      12     264 .. 0.77

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 1.6e-22
                 EEEE-TTS-HHHHHHHHHHHHHHHHTT-..B--B-C..TTBS-EEETTEEEEEEE----EE-SS...HHHHHHHHHHHHHHHHHHCCHHCH..-S.... CS
         APH  25 lrrnpparaaeeirrevallrlLakagv..pvPevl..agdtddeeigllfalieyvpgrsllr...klsaaqlpellealgeflaalhqvd.pa.... 111
                 ++++p    a +++re    +++++  +  pvPev   +    d+++ + +++++ +pg +l++   ++++ +++ +l++++e l++l  v+ p+    
  KKY23587.1  34 VKFAP----AIQTSREIIAIKFVRQKCPniPVPEVRgaWEVDEDDGEKTGYFAMSVLPGSILRDlwhTMTDGEKKTVLDDFAEILGQLRCVQaPEgsmi 128
                 44444....44999999999****887889*****96443355555555999999999999999999*********************99963444444 PP

                 ....TTTB-SHHCHTCCHH.......HHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--S..SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 112 ....alpladflaqdlell.......rqlesatarllaselldlleeleeqvlaalaallpg..elptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                       ++a +l+   ++l        +++++   l+++e ++    + + + ++++  l+g  + + ++ HgDl  +N+lv+  +gr+tG+iD+e+ag
  KKY23587.1 129 gavdGIGPAADLRAGGTELggpftseCDFNEWLVSLIHPESRQ---YFSDFFVETIRSSLAGlsAHRIRFSHGDLGMHNILVE--GGRITGIIDWEYAG 222
                 4444444444444444433333333366666655666666666...88888999999999999999*****************..9************* PP

                 EEECCHHHHCCHH CS
         APH 198 lgpplyDlavllr 210
                 + p  ++ + ++ 
  KKY23587.1 223 WYPEYWEYVKMIQ 235
                 ***9999988883 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   4.2e-09   3.8e-05     131     178 ..     178     225 ..     165     234 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 4.2e-09
                     HHTHHHHH.HCHGG-EEEE-S--SGGGEEE.-CTTEEE.E--GTT-EEEE CS
  Choline_kinase 131 leklekll.eelespvvfcHnDlqegNillnkeekklv.lIDFEYagyny 178
                     +e++++ l   + + + f+H Dl  +Nil+  e ++++ +ID+EYag  +
      KKY23587.1 178 VETIRSSLaGLSAHRIRFSHGDLGMHNILV--EGGRITgIIDWEYAGWYP 225
                     556777773455666***************..77777659******9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1977.96
//
Query:       KKY23588.1  [L=964]
Description: putative kh domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-32  109.2   2.8    8.7e-07   28.7   0.1    7.5  8  KH_1      KH domain


Domain annotation for each model (and alignments):
>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.62   1.1e+04      48      64 ..     101     117 ..      99     118 .. 0.77
   2 ?   -1.2   0.0       0.1   1.8e+03      49      64 ..     196     211 ..     158     213 .. 0.83
   3 !   24.4   0.0   1.1e-09   1.9e-05       9      66 .]     247     315 ..     238     315 .. 0.90
   4 !    4.9   0.0    0.0013        23      20      64 ..     343     385 ..     325     387 .. 0.77
   5 !    3.1   0.0    0.0048        86      22      65 ..     422     457 ..     420     458 .. 0.80
   6 !   15.9   0.1   4.6e-07    0.0083       3      65 ..     472     532 ..     470     533 .. 0.79
   7 !   28.7   0.1   4.8e-11   8.7e-07       2      48 ..     539     588 ..     538     609 .. 0.84
   8 !   23.9   0.0   1.5e-09   2.7e-05       2      63 ..     626     683 ..     625     686 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.62
                 EEEEESHHHHHHHHHHH CS
        KH_1  48 vtisGspeavekAkeli 64 
                 v isG+ + v+k +++i
  KKY23588.1 101 VCISGESDIVHKMRAKI 117
                 77999666699988887 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.1
                 EEEESHHHHHHHHHHH CS
        KH_1  49 tisGspeavekAkeli 64 
                 +++G++e+ e+Ak +i
  KKY23588.1 196 QVFGDMESMEHAKTRI 211
                 799*9*******9988 PP

  == domain 3  score: 24.4 bits;  conditional E-value: 1.1e-09
                 GHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT..............T.-EEEEEE.SHHHHHHHHHHHHH CS
        KH_1   9 slvgriIGkgGsnIkeIreetgakIkvpksedeg...........sderevtisG.speavekAkeliee 66 
                  ++ +i G+  +nIk I++ t++ I +p ++  +            +e+ev i G s+e++ +Ak++++e
  KKY23588.1 247 TMHTLICGRTRKNIKLIESATKTAIYFP-PPFFRvfgycpagatrRSEDEVFIAGrSEENIMQAKQKLRE 315
                 68999***********************.66666788*****************************9875 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.0013
                 HHHHHHHHHH.T-EEEEES.STT...T.-EEEEEE.SHHHHHHHHHHH CS
        KH_1  20 snIkeIreet.gakIkvpk.sedegsderevtisG.speavekAkeli 64 
                  ++++ +e t g+++ +p+ ++    +  +v+++G +   +e+ +++i
  KKY23588.1 343 DKVRKVME-TnGTYVLFPQlGS----QRGVVRVQGtEVLHIERTVREI 385
                 5799****.77*******8776....5799999996666666666665 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.0048
                 HHHHHHHHT-EEEEESSTT...T.-EEEEEESHHHHHHHHHHHH CS
        KH_1  22 IkeIreetgakIkvpksedegsderevtisGspeavekAkelie 65 
                 + +I   +ga  +++   +       +ti Gs + v++A+  i 
  KKY23588.1 422 LSDICTNSGADLTFD-KWA-------FTINGSDDEVKAAMMVIA 457
                 567888889999998.554.......9****8888****98875 PP

  == domain 6  score: 15.9 bits;  conditional E-value: 4.6e-07
                 EEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEES.STT...T.-EEEEEE.SHHHHHHHHHHHH CS
        KH_1   3 rilvPsslvgriIGkgGsnIkeIreetgakIkvpk.sedegsderevtisG.speavekAkelie 65 
                 +i++ +++  ++ Gk++ +I++I+ +++++I +++ +e     +  + + G   +av++ +el+e
  KKY23588.1 472 KIELANEHKEFVSGKKNGKINKIMGQSNVQIIFDGfNE----YNFYIDVCGgQYDAVKNGLELVE 532
                 67778889999*************99*******97443....44555556778889999888876 PP

  == domain 7  score: 28.7 bits;  conditional E-value: 4.8e-11
                 EEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT.......T.-EE CS
        KH_1   2 lrilvPsslvgriIGkgGsnIkeIreetgakIkvpksedeg....sderev 48 
                 ++++vP +++ riIG gG++I++I++++ + +k+  + +e+    ++++ v
  KKY23588.1 539 ISFHVPDQYHKRIIGIGGQHIQRIMKKYSVFVKFS-NAMERggigKEDDDV 588
                 6799**********************99******9.555544587555544 PP

  == domain 8  score: 23.9 bits;  conditional E-value: 1.5e-09
                 EEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT...T.-EEEEEESHHHHHHHHHH CS
        KH_1   2 lrilvPsslvgriIGkgGsnIkeIreetgakIkvpksedegsderevtisGspeavekAkel 63 
                 +++ +++ +++ +I +  + I e++++ ++kI++p+ e+    +++v isG++++v +A+++
  KKY23588.1 626 ETVVINRLYHRELIARMTE-IDELEKKWNCKIDFPRTEM---ASDVVYISGPEYQVPQAVDA 683
                 5666777777777755555.9*****88*******9887...6****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (964 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.50
# Mc/sec: 5856.89
//
Query:       KKY23589.1  [L=240]
Description: hypothetical protein UCRPC4_g02852 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.52
# Mc/sec: 1390.11
//
Query:       KKY23590.1  [L=389]
Description: putative coiled-coil domain-containing protein 55 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-38  129.1  18.1    8.5e-38  129.1  18.1    4.2  3  DUF2040   Coiled-coil domain-containing protein 55 (DUF2040)


Domain annotation for each model (and alignments):
>> DUF2040  Coiled-coil domain-containing protein 55 (DUF2040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1  18.1   4.7e-42   8.5e-38       2     119 ..      87     200 ..      86     202 .. 0.92
   2 ?    1.0   0.3     0.023   4.2e+02      48      71 ..     208     231 ..     203     257 .. 0.69
   3 ?  -12.7  23.5         1   1.8e+04      35      92 ..     316     359 ..     284     388 .. 0.38

  Alignments for each domain:
  == domain 1  score: 129.1 bits;  conditional E-value: 4.7e-42
     DUF2040   2 kkeaekaleeDpsvydYDevYDslkeakekkkakkkeekkerkpkYienLlkaaekRkrereraeerklqkereaegdefadkekFVTsaYkkkleelk 100
                 kk+a +a++ D+s+ydYD+vYD++++a++ k+++ +     + pkY+++L+++ae+Rkr++ ra+e++lqkereaegde+adkekFVT aYkk++ee++
  KKY23590.1  87 KKRAVEAERIDSSIYDYDNVYDTFSAASKPKQTS-N---VPSGPKYMTSLMNSAEVRKRDQLRAKEKMLQKEREAEGDEYADKEKFVTGAYKKQQEEMR 181
                 789999*******************987755433.3...3458******************************************************** PP

     DUF2040 101 kleeeekrreeeeekkdvt 119
                 +leeee++re+eee+++++
  KKY23590.1 182 RLEEEEAKREAEEEERRKK 200
                 *************999886 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.023
     DUF2040  48 ienLlkaaekRkrereraeerklq 71 
                  +n+lk  ++R++e ++a e++++
  KKY23590.1 208 YQNFLKREDQRHEEIQKAAEQRAA 231
                 567777777777776666655544 PP

  == domain 3  score: -12.7 bits;  conditional E-value: 1
     DUF2040  35 kkkeekkerkpkYienLlkaaekRkrereraeerklqkereaegdefadkekFVTsaY 92 
                 +++e+++er+ + + + l++ ++++ e+e +              e ++ e+ V s  
  KKY23590.1 316 SARESQRERQTRMLAAQLEEMQRKQAEEEEM--------------ERKETETKVKSKV 359
                 2222222333443333333333333333333..............3333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3035  (0.169279); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.99u 0.29s 00:00:01.28 Elapsed: 00:00:00.48
# Mc/sec: 2412.04
//
Query:       KKY23591.1  [L=307]
Description: putative calcium homeostasis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-66  222.1   0.1    9.7e-66  221.8   0.1    1.1  1  SGL       SMP-30/Gluconolactonase/LRE-like region


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.8   0.1   5.4e-70   9.7e-66       1     245 [.      18     270 ..      18     271 .. 0.94

  Alignments for each domain:
  == domain 1  score: 221.8 bits;  conditional E-value: 5.4e-70
         SGL   1 lgEGpvwdeeegaLlwvDilgqrihrldpatgketv..ldtpesvGaiaprkd..grlvvasksglalldlasgeletladeee....dekpllrfNDg 91 
                 lgEGp + e+++++ + Di+ +++++ d+++g+++   +dt +s+G++a+ ++   ++v++sk+g+a ++la+g+ e la+ ++    ++  + r+NDg
  KKY23591.1  18 LGEGPWYNEKRNEVRFLDIMSEKLYTADLNEGQSSLreYDTGSSIGVTADIEGsdAEIVAGSKEGFAKFNLATGKKEILAKFWPegetEQFHKFRSNDG 116
                 79********************************997777888*******66666*************************99555555777999***** PP

         SGL  92 vvdpdGrlwfGtmgdeeakgeev..galyrldpdgklervlddltipNGlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkgegepDG 188
                 ++d++Gr+w+G  +d +  + ++  + ++r+dpdg+++r+ d+l+ipNG  ws+d+kt+Y++D ++++iw+ d++ e+gk+sn+r+f++ ++g+g +DG
  KKY23591.1 117 ACDSRGRFWVGAFNDPKYIEPQEgaAVMFRFDPDGSIHRMWDNLSIPNGFQWSADDKTMYMTDGPAKCIWQWDFEIETGKISNQRPFFKREEGPGDMDG 215
                 **************99876665557889*********************************************************************** PP

         SGL 189 lavDaeGnvwvAvwgggkvvrfdpd.GklieeiklpakrvtscaFgGpdlrtLyitsa 245
                 +a+D+eG++w+Av+ggg+v r+++d  k+i+e+klp+k++t++ F+G++   L itsa
  KKY23591.1 216 SAMDEEGCIWNAVFGGGRVLRIAKDgSKVIGEVKLPTKNITCPFFAGTE---LIITSA 270
                 *************************6689****************9998...999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 2147.13
//
Query:       KKY23592.1  [L=182]
Description: putative gins complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-17   62.9   0.0    4.5e-17   62.5   0.0    1.2  1  Sld5      GINS complex protein
  ------ inclusion threshold ------
       0.16   12.1   0.3       0.38   10.9   0.1    1.7  2  DprA_WH   DprA winged helix domain


Domain annotation for each model (and alignments):
>> Sld5  GINS complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.0     5e-21   4.5e-17       1     109 []      44     160 ..      44     160 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 5e-21
                 EEEEHHHHHHHH........HTTSCCCHHCHHHCHHHHHHCCCHHTTSSSSTTTTTTHHHHHHHHHHHHT.HCHHHHHHHHHHHHHHHHHHHTHCHHHH CS
        Sld5   1 veLPlWlaelLk........rqrrveieppewlspesleailedetkssdlpslpphflelavkllelardldelkrllrdllevRlakirkfaenled 91 
                 veLPlWla +L+         q   +ie+p  ls+++++a+++d++++ dl+++  hf+ la    e+++d +++  +l+d++++R a + ++a nl +
  KKY23592.1  44 VELPLWLATMLSsgilsftqGQAPISIELPTPLSQRVINALKADPRSV-DLRAQASHFYGLAALAFEIFED-EDTVDVLLDTFKSRGALLSDHANNLHG 140
                 69****************9999999***********************.**********************.*************************** PP

                 HH..HTS-TCCHCCS-HHHH CS
        Sld5  92 aa..gggggellsglseeEk 109
                 a+  gg+g+e+l+gl+e E+
  KKY23592.1 141 ALsgGGEGTEFLRGLDELER 160
                 *****************996 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   4.3e-05      0.38       3      30 ..      66      93 ..      64     100 .. 0.84
   2 ?   -2.9   0.0      0.87   7.8e+03       9      20 ..     154     165 ..     152     169 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.3e-05
     DprA_WH  3 appaepplddlerrvLaaLgpePvhvDq 30
                ap + + +++l +rv +aL ++P++vD 
  KKY23592.1 66 APISIELPTPLSQRVINALKADPRSVDL 93
                566677789******************6 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.87
     DprA_WH   9 plddlerrvLaa 20 
                 +ld+ler+++ a
  KKY23592.1 154 GLDELERKLFRA 165
                 678888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1263.76
//
Query:       KKY23593.1  [L=2028]
Description: putative filament-forming protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-36  123.2  27.6    6.7e-36  123.2  27.6   16.7 15  TPR_MLP1_2    TPR/MLP1/MLP2-like protein
     0.0035   17.1   2.7     0.0035   17.1   2.7    8.1 12  DUF2937       Protein of unknown function (DUF2937)
     0.0075   16.7  30.7     0.0075   16.7  30.7   13.2 14  Fez1          Fez1
  ------ inclusion threshold ------
       0.99    9.2   9.7        2.1    8.1   3.0    3.4  2  CdiI          CDI immunity protein


Domain annotation for each model (and alignments):
>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4  16.3         4   1.8e+04      11      99 ..      38     126 ..      30     159 .. 0.53
   2 ?   -3.3  23.4       1.9   8.7e+03       5     122 ..     123     240 ..     118     247 .. 0.65
   3 ?   -6.2  24.7         4   1.8e+04       5     115 ..     151     268 ..     148     275 .. 0.74
   4 !    5.3  26.6    0.0044        20       2     108 ..     261     367 ..     260     370 .. 0.78
   5 ?    0.8   8.7       0.1   4.6e+02      27     126 ..     415     517 ..     411     521 .. 0.64
   6 ?    0.9   5.5       0.1   4.6e+02      55     114 ..     579     639 ..     568     650 .. 0.64
   7 !    5.6   5.5    0.0036        16      53     112 ..     711     773 ..     708     779 .. 0.81
   8 ?    2.3  11.4     0.037   1.7e+02      66     126 ..     787     850 ..     775     853 .. 0.75
   9 !    4.3  16.3    0.0086        39       9      95 ..     860     950 ..     851     955 .. 0.84
  10 !   13.4  18.9   1.4e-05     0.061       8     110 ..     993    1092 ..     979    1095 .. 0.84
  11 !  123.2  27.6   1.5e-39   6.7e-36       2     128 ..    1079    1205 ..    1078    1206 .. 0.99
  12 ?   -2.7  16.7       1.3   5.9e+03       8      95 ..    1259    1345 ..    1253    1366 .. 0.65
  13 !    9.1  17.0    0.0003       1.3       2     129 .]    1343    1479 ..    1342    1479 .. 0.92
  14 ?   -4.1  22.3       3.4   1.5e+04       8      85 ..    1509    1585 ..    1503    1602 .. 0.80
  15 ?  -10.8  17.1         4   1.8e+04      36     105 ..    1656    1726 ..    1640    1740 .. 0.51

  Alignments for each domain:
  == domain 1  score: -4.4 bits;  conditional E-value: 4
  TPR_MLP1_2  11 kslkeekeeaea.klqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqke 99 
                 +sl+ +++e+e+ + qkl++d+e +++i +  + k +      ++ + e+ +lr+el++ ++ + +l++++ ++k++ +++ ++ +  k+
  KKY23593.1  38 SSLTPKIQEYEElRSQKLKQDIELETAIRT-NESKVKVHKASVEKGLAEIGKLRTELQQSENSRLKLESDLAQLKSATSTEASETSALKS 126
                 555555555555345666666666665533.33334444444445556677777777777777777766666666555544433332222 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.9
  TPR_MLP1_2   5 sleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelek 103
                 +l++ ++sl++++ e  a l++  +  +k ae +++ +q+  +   + a+  ++lq++++ +++++ + ++l++e e +k+++e    +++++  e  k
  KKY23593.1 123 ALKSRVASLEASNRETIAVLESKSSSYNKLAEDLSTQHQRTVELRRQVAQLEQDLQSANSTASSTRFREQNLEQEIELLKKNNEWLDTELKTKSAEHLK 221
                 444444444444444444444444444444444444444444444466666677777777778888888888888888888888888888888888888 PP

  TPR_MLP1_2 104 elselekriedlneqNklL 122
                   ++  +ri +l+ qN+l 
  KKY23593.1 222 FRKDRSARISELQRQNELT 240
                 8899999*********985 PP

  == domain 3  score: -6.2 bits;  conditional E-value: 4
  TPR_MLP1_2   5 sleeeikslkeekeeaeaklqklqedlekqaeiakea...qqkYere..lvkhaedv..kelqalreelnelkaeiaelkaeaesakaeleeseeswee 96 
                 +l e++++  ++  e+++++++l++dl++  + a+     +q+ e+e  l+k+++++  +el++  +e+ + +++++   +e+++ ++    + es+++
  KKY23593.1 151 KLAEDLSTQHQRTVELRRQVAQLEQDLQSANSTASSTrfrEQNLEQEieLLKKNNEWldTELKTKSAEHLKFRKDRSARISELQRQNELTLSENESLKR 249
                 566777778888888888999999998877655544322277777752255666555445677777788888888888889999999999999999999 PP

  TPR_MLP1_2  97 qkeelekelselekriedl 115
                  + +l+++l+e  +r+e+l
  KKY23593.1 250 NEASLKSRLDEQVQRVEEL 268
                 9999999999999999998 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.0044
  TPR_MLP1_2   2 elksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreel....nelkaeiaelkaeaesakaeleeseeswee 96 
                 +++++ee ++++++ kee  +++++++ dl + +++a+   q+ e+      e +++l+++ree+     +l+ae+++ ++e+e+a++ ++e e s e+
  KKY23593.1 261 QVQRVEELLTEIQQLKEENIQQAESHRLDLDNTTRLAELQRQRAESANARVQELSTSLEEVREEAsdeiGRLRAEVETEQQEREAAEQRVSELETSVEQ 359
                 6778899999999***************************************************94444455666666666666666666666666665 PP

  TPR_MLP1_2  97 qkeelekelsel 108
                  ++el      +
  KKY23593.1 360 LESELS----AA 367
                 555554....44 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.1
  TPR_MLP1_2  27 lqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaelees...eesweeqkeelekelselekriedlneqNklL 122
                 l ++++k ++++   q + e+     ++ +k+l+a + e+++l+ + a l+ae  + +a ++++   + +  +   + + el+ l   ++ l +qN+ L
  KKY23593.1 415 LYSECRKLEKQLISEQHRNEELSATLEDVAKDLEANKPEIEQLRGDHARLEAEMVEMSALMDAAakeRDNAMNDARRARGELDGLSIERNALLQQNRDL 513
                 555666666666666666666666666677777777777777777777777776666555544400034444555666777777888888888888888 PP

  TPR_MLP1_2 123 hdQl 126
                  +Q+
  KKY23593.1 514 GSQI 517
                 7777 PP

  == domain 6  score: 0.9 bits;  conditional E-value: 0.1
  TPR_MLP1_2  55 dvkelqalreelnelka.eiaelkaeaesakaeleeseesweeqkeelekelselekried 114
                 ++k l+ lre  +++++ e++e  + +++ ++ele+ + + ++ k+el+  ++++++ +++
  KKY23593.1 579 NSKVLRMLRELGERMESeEARERDEVRQKEREELEQLRVKVATYKDELQAMITQSRSYVKE 639
                 3444444454444444314566666677777788888888888888888888877777776 PP

  == domain 7  score: 5.6 bits;  conditional E-value: 0.0036
  TPR_MLP1_2  53 aedvkelqalreelnelkaeiaelkaeaesakaeleesees...weeqkeelekelselekri 112
                  e++++ +al++++n+l ++ ++l++e+ +++++l+++ +    ++   ++l+ e +el+kr+
  KKY23593.1 711 QEAATDHTALKNQVNDLSKKNSDLQTENSRTSSQLSTAVQRgemLQANFDMLRAENNELQKRV 773
                 68899999***************************9887651114555578889999999987 PP

  == domain 8  score: 2.3 bits;  conditional E-value: 0.037
  TPR_MLP1_2  66 lnelkaeiaelkaeaesak...aeleeseesweeqkeelekelselekriedlneqNklLhdQl 126
                 ++++ +e+ e+   +es +   a+l++++  w++ +++l ++ + l++ +  l++ N+ L + l
  KKY23593.1 787 AQQVAEELVEAHGTLESIRreaANLKAEKDLWKNIEKRLVEDNEALRNERARLDKLNSSLQNML 850
                 356666666666555555422267999999******************************9876 PP

  == domain 9  score: 4.3 bits;  conditional E-value: 0.0086
  TPR_MLP1_2   9 eikslkeekeeaeaklqklqedlekqaeiakeaq..qkYerelvkha..edvkelqalreelnelkaeiaelkaeaesakaeleeseeswe 95 
                 +  +l++++e++ea+lq+ +++l  + e+ ++a   + Ye+e +++   + v++l ++reel+ +k+    l+a+ e+++ el  +ee  +
  KKY23593.1 860 TRRRLQASIESLEAELQTSKRKLSDEMEESRKATlrREYEHEQNQKRidDLVTSLGSVREELSAAKTSKDHLQARTEELTVELRSAEERVQ 950
                 55689999999999999999999999999998853377999988875336799********************************999876 PP

  == domain 10  score: 13.4 bits;  conditional E-value: 1.4e-05
  TPR_MLP1_2    8 eeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkh.aedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelek 103 
                  +ei++++e++e++++ +q+++e l++  +   +    Y +e     +e +k++q+l ++++++ +e+ + ++e+ +++ e + s   +eeqk ++e 
  KKY23593.1  993 AEIDRANEQIEDYKNIAQQAEERLQELVDTNDQ----YREETDRTlEERAKKIQELEQRIEDISSELGTTNNELSKLRDEQSDSSRRLEEQKAMFEA 1085
                  788999999999999999999998887766555....555555442567899999999*************************************** PP

  TPR_MLP1_2  104 elselek 110 
                  e+s l+ 
  KKY23593.1 1086 EISRLKD 1092
                  ***9986 PP

  == domain 11  score: 123.2 bits;  conditional E-value: 1.5e-39
  TPR_MLP1_2    2 elksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqk 98  
                  +++ +e+ei++lk+e e+ ++++q +qedl++qaeia++aqq+Ye+elv hae++k+lqa+r+e+++lk e+  l++ea++a+++l ++eesw+eqk
  KKY23593.1 1079 QKAMFEAEISRLKDEGERNATAAQFHQEDLKAQAEIAQRAQQNYETELVRHAEAAKNLQAVRSEASQLKLELVGLRSEADTARSSLTQKEESWTEQK 1175
                  8999********************************************************************************************* PP

  TPR_MLP1_2   99 eelekelselekriedlneqNklLhdQlEs 128 
                  +++e+el +l+kr+++  +qN++Lh+Q+E 
  KKY23593.1 1176 DRYERELLDLRKRRDEALQQNNILHQQMED 1205
                  *****************************7 PP

  == domain 12  score: -2.7 bits;  conditional E-value: 1.3
  TPR_MLP1_2    8 eeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkha...edvkelqalreelnelkaeiaelkaeaesakaeleeseeswe 95  
                  +e k+l+++ ++++++l + + +l +q++    a+ + er  ++h+   e+++el+ +re + +l+a+ +e+++++ + + +++e ++++e
  KKY23593.1 1259 QESKRLRQQLDHSQSQLDETRLKLDQQRR----AEADTERATLNHNklmETLNELNLFRESSVTLRAQFKEAETNLTERSRQVQELTSQIE 1345
                  68899999999999999999999998865....3333355555555000445555555666666677766666666666666666555544 PP

  == domain 13  score: 9.1 bits;  conditional E-value: 0.0003
  TPR_MLP1_2    2 elksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYer....elvkhaedvkelqalreel....nelkaeiaelkaeaesakaelee. 89  
                  +++ l+  i +l++  e  e +l+ + ed    ++++++   kY r    e+  ++e + +lq+ r+e+    ++l++ei ++ ++ e+ak++l   
  KKY23593.1 1343 QIEPLQIRIGELENVLETREGELKIISEDRDRWRDRTNNIMAKYNRvdpeEVEAQKEKLAALQKERDEAvaekAQLQTEIDSFPERIETAKQDLRSr 1439
                  5667888889999999999*************************9666669******************9999********************9761 PP

  TPR_MLP1_2   90 seesweeqkeelekelselekriedlneqNklLhdQlEsl 129 
                    e+ +++ ++l ++++e ++ ++  n+  + L +Ql+s+
  KKY23593.1 1440 LGEQFKTRSKQLTTRIAEKQSELDAANAEKSNLETQLQSV 1479
                  57899********************************985 PP

  == domain 14  score: -4.1 bits;  conditional E-value: 3.4
  TPR_MLP1_2    8 eeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreel.nelkaeiaelkaeaesaka 85  
                  + i++l+++ +++e+++ + +++l++ ++++++  +  ere  ++ + +++ ++lr+e+ ++lk+ +++++ ++++ ++
  KKY23593.1 1509 TRIQELEARVAQLESTAVSKEQELQALRAEYEQKTK--EREAELKQALAQQATKLRSEHeASLKNALETAEGRLKASHE 1585
                  678999999999999999999999999999999999..99999999999999999999966788888888777765544 PP

  == domain 15  score: -10.8 bits;  conditional E-value: 4
  TPR_MLP1_2   36 eiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakael.eeseesweeqkeelekel 105 
                  + +++a+++ ++ l+  a+++++  +  +  +  k+  +e  + a++++ +l +e+e++++eq+e++ +e+
  KKY23593.1 1656 KAVAKAKEDAKKDLQAAADAAEASVSSSAFEALEKKHTTEKDSLANELRMKLnNEKEAALKEQEEKFSNEK 1726
                  44555666666666666666665544444333333333333333333333331344555566666665554 PP

>> DUF2937  Protein of unknown function (DUF2937)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.8      0.35   1.6e+03      69      99 ..     146     176 ..     120     206 .. 0.70
   2 ?   -1.9   0.1      0.54   2.4e+03      80     100 ..     259     279 ..     221     297 .. 0.66
   3 ?   -1.7   0.9      0.48   2.1e+03      43      63 ..     266     286 ..     253     329 .. 0.39
   4 ?   -2.0   1.6      0.59   2.6e+03      32      92 ..     308     363 ..     296     371 .. 0.63
   5 ?   -4.0   0.3       2.4   1.1e+04      68      98 ..     601     631 ..     598     638 .. 0.74
   6 ?   -1.0   2.0      0.28   1.3e+03      36     108 ..     700     776 ..     695     787 .. 0.61
   7 ?   -2.6   0.1       0.9     4e+03      59      97 ..     819     850 ..     787     878 .. 0.59
   8 !   17.1   2.7   7.9e-07    0.0035      33      98 ..     993    1060 ..     991    1065 .. 0.91
   9 ?   -2.8   0.5         1   4.7e+03      42      66 ..    1108    1132 ..    1076    1155 .. 0.61
  10 ?   -3.4   0.8       1.6     7e+03      94      98 ..    1211    1215 ..    1187    1278 .. 0.59
  11 ?    1.1   7.2     0.063   2.8e+02      34      98 ..    1510    1570 ..    1508    1585 .. 0.90
  12 ?   -3.2   0.8       1.3   5.8e+03      57      85 ..    1654    1682 ..    1651    1725 .. 0.55

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.35
     DUF2937  69 dpvvradaesiqalverlerLeqelqalqqa 99 
                   + ++ ae +++  +r  +L++++++l+q 
  KKY23593.1 146 SSSYNKLAEDLSTQHQRTVELRRQVAQLEQD 176
                 4566667777777777777777777777662 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.54
     DUF2937  80 qalverlerLeqelqalqqas 100
                 ++ v+r+e+L +e q+l++++
  KKY23593.1 259 DEQVQRVEELLTEIQQLKEEN 279
                 344566666666666666633 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.48
     DUF2937  43 agfqatAkrffkgdlealiah 63 
                 +++  + ++ ++ +++++ +h
  KKY23593.1 266 EELLTEIQQLKEENIQQAESH 286
                 222222222222222222222 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 0.59
     DUF2937  32 eghldelkrqlagfqatAkrffkgdlealiahyrqsedpvvradaesiqalverlerLeqe 92 
                 +++++el+++l++ +++A+      l+a ++  +q  +++     +++++l + +e+Le+e
  KKY23593.1 308 NARVQELSTSLEEVREEASDEIG-RLRAEVETEQQEREAA----EQRVSELETSVEQLESE 363
                 47788888888888888876554.6777777777766533....33344444444444444 PP

  == domain 5  score: -4.0 bits;  conditional E-value: 2.4
     DUF2937  68 edpvvradaesiqalverlerLeqelqalqq 98 
                  d+v +++ e++++l  +++  ++elqa+ +
  KKY23593.1 601 RDEVRQKEREELEQLRVKVATYKDELQAMIT 631
                 6778888888888888888888888888765 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 0.28
     DUF2937  36 delkrqlagfqatAkrffkgdlealiahy.rqsedpvvra..daesiqalverlerLeqelqalqqa..sllerlvvl 108
                 + l+ + + ++++A+  +   l++ ++ + ++++d   ++     +++++v+r e+L+++ + l+ +  +l +r++ +
  KKY23593.1 700 KDLQIHFDSYKQEAATDHT-ALKNQVNDLsKKNSDLQTENsrTSSQLSTAVQRGEMLQANFDMLRAEnnELQKRVYSV 776
                 5677777888888877777.5666665551455555544311455677888888888888877765432444455555 PP

  == domain 7  score: -2.6 bits;  conditional E-value: 0.9
     DUF2937  59 aliahyrqsedpvvradaesiqalverlerLeqelqalq 97 
                 + i       ++ + +d e++++  +rl++L+++lq++ 
  KKY23593.1 819 KNI-------EKRLVEDNEALRNERARLDKLNSSLQNML 850
                 333.......44444444555555555555555555543 PP

  == domain 8  score: 17.1 bits;  conditional E-value: 7.9e-07
     DUF2937   33 ghldelkrqlagfqatAkrffkgdlealia...hyrqsedpvvradaesiqalverlerLeqelqalqq 98  
                  + +d +++q++++++ A++ ++  l++l++   +yr+ +d+ ++++a++iq+l +r e++++el + ++
  KKY23593.1  993 AEIDRANEQIEDYKNIAQQAEE-RLQELVDtndQYREETDRTLEERAKKIQELEQRIEDISSELGTTNN 1060
                  78999*****************.******64448***************************99987665 PP

  == domain 9  score: -2.8 bits;  conditional E-value: 1
     DUF2937   42 lagfqatAkrffkgdlealiahyrq 66  
                  l++  + A+r ++    +l++h ++
  KKY23593.1 1108 LKAQAEIAQRAQQNYETELVRHAEA 1132
                  3333344444444333444444443 PP

  == domain 10  score: -3.4 bits;  conditional E-value: 1.6
     DUF2937   94 qalqq 98  
                  +alq+
  KKY23593.1 1211 AALQR 1215
                  22222 PP

  == domain 11  score: 1.1 bits;  conditional E-value: 0.063
     DUF2937   34 hldelkrqlagfqatAkrffkgdlealiahyrqsedpvvradaesiqalverlerLeqelqalqq 98  
                  +++el+  +a+++ tA + ++ +l+al a y+q++    +++ae +qal +++++L++e +a  +
  KKY23593.1 1510 RIQELEARVAQLESTAVSKEQ-ELQALRAEYEQKTK---EREAELKQALAQQATKLRSEHEASLK 1570
                  689******************.***********996...89****************99887655 PP

  == domain 12  score: -3.2 bits;  conditional E-value: 1.3
     DUF2937   57 lealiahyrqsedpvvradaesiqalver 85  
                  +++++a+ ++ + + ++a a++ +a v+ 
  KKY23593.1 1654 IQKAVAKAKEDAKKDLQAAADAAEASVSS 1682
                  55666666655555555555555554432 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5  17.8     0.019        83      25     144 ..      39     177 ..      32     178 .. 0.51
   2 ?   -1.7  29.2      0.76   3.4e+03      32     154 ..     127     279 ..     119     289 .. 0.58
   3 ?   -0.3  26.1      0.28   1.3e+03      35     150 ..     253     370 ..     236     377 .. 0.53
   4 ?   -0.7  22.1      0.37   1.6e+03      36     155 ..     292     437 ..     273     442 .. 0.58
   5 ?   -2.3  22.3       1.1   5.1e+03      45     182 ..     417     629 ..     403     649 .. 0.58
   6 ?   -3.5  20.8       2.7   1.2e+04      33     151 ..     717     853 ..     689     855 .. 0.36
   7 ?   -3.0  25.6       1.9   8.6e+03      40     156 ..     773     887 ..     761     904 .. 0.67
   8 ?   -2.6  24.5       1.4   6.3e+03      39     148 ..     824     946 ..     806     955 .. 0.54
   9 ?   -1.2  18.2      0.52   2.3e+03      45     153 ..     866     997 ..     858    1008 .. 0.56
  10 !   16.7  30.7   1.7e-06    0.0075      15     171 ..     998    1177 ..     987    1177 .. 0.78
  11 !    6.7  25.1     0.002       8.8      19     169 ..    1136    1301 ..    1132    1302 .. 0.66
  12 !   13.7  15.2   1.5e-05     0.066      18     151 ..    1301    1436 ..    1295    1450 .. 0.81
  13 ?   -6.2  28.0         4   1.8e+04      25     150 ..    1435    1586 ..    1431    1598 .. 0.62
  14 ?   -8.1  36.6         4   1.8e+04      43     174 ..    1507    1738 ..    1502    1743 .. 0.63

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.019
        Fez1  25 evtqklseivalkaq.lr...elrakleekeeeikeleesleektlelevcenelqrk.......kseaellrekvekleeelkelreelselsleeee 112
                  +t k++e+ +l++q l+   el+++++++e+++k +++s+e+  +e+ ++  elq++       +s+   l+  +++  +e++ l++++++l+++++e
  KKY23593.1  39 SLTPKIQEYEELRSQkLKqdiELETAIRTNESKVKVHKASVEKGLAEIGKLRTELQQSensrlklESDLAQLKSATSTEASETSALKSRVASLEASNRE 137
                 567788888888887233223466666777777777777777777777777777777733333322222223333333334444444444444444444 PP

        Fez1 113 aa........lesdeakaqrqe.........aeeleelkreverlraeL 144
                 ++        +          +         ++++ el+r+v++l++ L
  KKY23593.1 138 TIavleskssS------Y---NklaedlstqHQRTVELRRQVAQLEQDL 177
                 33443332221......2...1222333333566667777777776665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.76
        Fez1  32 eivalkaqlrelrakleekeeeikeleesleektle.......levcenelqrkkseaellrekvekleeelkelreelselsleeeeaa......... 114
                  + +l a+ re+ a le+k ++ ++l e l+++++        + ++e++lq ++s+a+ +r + ++le+e++ l+++ + l +e ++++         
  KKY23593.1 127 RVASLEASNRETIAVLESKSSSYNKLAEDLSTQHQRtvelrrqVAQLEQDLQSANSTASSTRFREQNLEQEIELLKKNNEWLDTELKTKSaehlkfrkd 225
                 566788888888888888888888888877766555555666677788888888888888888888888888888876555444333333345555555 PP

        Fez1 115 ..............lesdeakaqrqeaeeleelkreverlraeLkeerqkkeeq 154
                               + s++   +r+ea+  ++l+++v+r+++ L+e +q kee+
  KKY23593.1 226 rsariselqrqnelTLSENESLKRNEASLKSRLDEQVQRVEELLTEIQQLKEEN 279
                 443333333333332222223334444455555555555555555555555544 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.28
        Fez1  35 alkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa.....lesdeakaqrqeae 128
                 +lk++l e  +++ee  +ei++l+e+     ++ e    +l++++  ael r+++e++++ ++el ++l+e+ +e+++++     +  +e+++++++++
  KKY23593.1 253 SLKSRLDEQVQRVEELLTEIQQLKEEN---IQQAESHRLDLDNTTRLAELQRQRAESANARVQELSTSLEEVREEASDEIgrlraEVETEQQEREAAEQ 348
                 455555555555555555555554443...333333444444444444444444444444444444444444444333334443333444455666688 PP

        Fez1 129 eleelkreverlraeLkeerqk 150
                 +++el+ +ve+l++eL+  + +
  KKY23593.1 349 RVSELETSVEQLESELSAAKAS 370
                 99**************998865 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.37
        Fez1  36 lkaqlrelrak.leekeee....ikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa............... 114
                   ++l el+ +  e+ +++     ++lee +ee ++e+ ++ +e++ +++e e  +++v++le+ +++l +els+++++e  a+               
  KKY23593.1 292 NTTRLAELQRQrAESANARvqelSTSLEEVREEASDEIGRLRAEVETEQQEREAAEQRVSELETSVEQLESELSAAKASEGPATpsrgvnghgsatpir 390
                 222233322210222233300003445555666778899999999999999999999999999999999999999887776666667776666666666 PP

        Fez1 115 ......lesdeakaqrqe..........aeeleelkreverlraeLkeerqkkeeqa 155
                       l                     + ++++l +e  +l+++L  e++++ee  
  KKY23593.1 391 agtptgL----------GspmsisrfrgSLSTTQLYSECRKLEKQLISEQHRNEELS 437
                 6655551..........0333333333356778888888888888888888887765 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 1.1
        Fez1  45 akleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa............................. 114
                 ++ ++ e+++ + +++ ee ++ le + ++l+ +k e e lr    +le+e+ e+   + ++++e+++a+                             
  KKY23593.1 417 SECRKLEKQLISEQHRNEELSATLEDVAKDLEANKPEIEQLRGDHARLEAEMVEMSALMDAAAKERDNAMndarrargeldglsiernallqqnrdlgs 515
                 455555666666666666666666666666666666666666666666666666666444444444443344444445555555444444444444444 PP

        Fez1 115 ........lesdeakaqrqe..............................................aeeleelkreverlraeLkeerqkke..eqass 157
                         +          +                                               +el+e +++v r+ +eL e  +++e  e+ + 
  KKY23593.1 516 qikvllaeQ----------HlrdnghsmspdefanletvsrisaselesmtdtgrfisehltifknISELQENNSKVLRMLRELGERMESEEarERDEV 604
                 444444440..........04444444445555555555555555666667777777888888777566666666666666666544333331044456 PP

        Fez1 158 FeqERrtWqeeKekVirYqkqLQln 182
                  ++ER+  ++ + kV  Y+ +LQ+ 
  KKY23593.1 605 RQKEREELEQLRVKVATYKDELQAM 629
                 7899999999999*********974 PP

  == domain 6  score: -3.5 bits;  conditional E-value: 2.7
        Fez1  33 ivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa..............les 117
                   alk+q+ +l++k ++ ++e+++++++l++  +  e ++++++  ++e++ l+++v ++ e+ +  ++el++++      a               e 
  KKY23593.1 717 HTALKNQVNDLSKKNSDLQTENSRTSSQLSTAVQRGEMLQANFDMLRAENNELQKRVYSVMENAT--KQELKAQQV-----AeelveahgtlesirRE- 807
                 23344444444444333333444444444443333333333333333333333333222222211..111111111.....11111111222221111. PP

        Fez1 118 deakaqrqe....................aeeleelkreverlraeLkeerqkk 151
                         +                    +e+l+++++++++l+++L++  +++
  KKY23593.1 808 --------AanlkaekdlwkniekrlvedNEALRNERARLDKLNSSLQNMLNER 853
                 ........0111122222222333343345666666666677766666655554 PP

  == domain 7  score: -3.0 bits;  conditional E-value: 1.9
        Fez1  40 lrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqeaeeleelkreve 138
                 +  + ++ +++e +++++ e+l e +  le +  e ++ k+e++l ++  ++l e+ + lr+e ++l + +++ +   + ++ ++ ++e+ ++l++++e
  KKY23593.1 773 VYSVMENATKQELKAQQVAEELVEAHGTLESIRREAANLKAEKDLWKNIEKRLVEDNEALRNERARLDKLNSSLQ--NMLNEREQVDNETRRRLQASIE 869
                 444455556777788888888888888899999999999**********************98888665444443..3333334444466777777777 PP

        Fez1 139 rlraeLkeerqkkeeqas 156
                  l+aeL++ ++k  ++++
  KKY23593.1 870 SLEAELQTSKRKLSDEME 887
                 777777776666443332 PP

  == domain 8  score: -2.6 bits;  conditional E-value: 1.4
        Fez1  39 qlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe........... 126
                 +l e +++l+++ +++++l++sl++  +e e+++ne +r+      l+  +e+le+el+  +++ls+  +e+++a+l+ +  ++q+q+           
  KKY23593.1 824 RLVEDNEALRNERARLDKLNSSLQNMLNEREQVDNETRRR------LQASIESLEAELQTSKRKLSDEMEESRKATLRREYEHEQNQKriddlvtslgs 916
                 3445555666666666666666666666666666666665......45556666677777777666666555555544444444444444445555555 PP

        Fez1 127 ........aeeleelkreverlraeLkeer 148
                         +++ ++l++++e+l  eL+  +
  KKY23593.1 917 vreelsaaKTSKDHLQARTEELTVELRSAE 946
                 544444434444455555555555555444 PP

  == domain 9  score: -1.2 bits;  conditional E-value: 0.52
        Fez1  45 akleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa.........lesdeakaqrqe........ 126
                 a++e+      el++s ++ ++e+e+  +   r++ e+e  +++++ l + l ++reels++++++++ +         l+         +        
  KKY23593.1 866 ASIESL---EAELQTSKRKLSDEMEESRKATLRREYEHEQNQKRIDDLVTSLGSVREELSAAKTSKDHLQarteeltveLR---------Saeervqvl 952
                 333333...344555555556677777777777777777777888888888888888888777777666645555544411.........112222233 PP

        Fez1 127 ..................aeeleelkreverlraeLkeerqkkee 153
                                    ++ +el  ev +l++ L +   + ++
  KKY23593.1 953 qkpaapqppetveasqnlVSREQELAVEVSELKRDLDLRAAEIDR 997
                 355555555555555555666777777777777777655444433 PP

  == domain 10  score: 16.7 bits;  conditional E-value: 1.7e-06
        Fez1   15 LKqQLkdsqa...evtqklseivalkaqlre.lrakleekeeeikeleesleektlelevcenelqrk....kseaellrekvekleeelkelreel 103 
                    +Q+ d+++   +  ++l+e+v    q re +  +lee+ ++i+ele+++e+ + el + +nel++     ++++  l+e+   +e+e+++l++e 
  KKY23593.1  998 ANEQIEDYKNiaqQAEERLQELVDTNDQYREeTDRTLEERAKKIQELEQRIEDISSELGTTNNELSKLrdeqSDSSRRLEEQKAMFEAEISRLKDEG 1094
                  55566555442216778************9725679******************************9955544555678999999*********987 PP

        Fez1  104 selsleeeeaa..lesdeakaqrqe.............aeeleelkreverlraeLkeerqkkeeqassFeqERrtWqeeKek 171 
                  +++++ ++ ++  l++++  aqr++             a++l++ ++e  +l+ eL   r + ++ +ss  q  + W+e+K++
  KKY23593.1 1095 ERNATAAQFHQedLKAQAEIAQRAQqnyetelvrhaeaAKNLQAVRSEASQLKLELVGLRSEADTARSSLTQKEESWTEQKDR 1177
                  765433322223322232233333356889999999989999***************************************98 PP

  == domain 11  score: 6.7 bits;  conditional E-value: 0.002
        Fez1   19 Lkdsqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkel...reelselsleeee 112 
                  L+ +++e +q   e+v l+++   +r++l++kee+ +e ++++e   l+l +  +e  ++   +++l++++e l ++++ l   r +l+e++    e
  KKY23593.1 1136 LQAVRSEASQLKLELVGLRSEADTARSSLTQKEESWTEQKDRYERELLDLRKRRDEALQQ---NNILHQQMEDLTNQIAALqrnRAALTETE---GE 1226
                  7778899************************************99999988877775444...34444444445555544400055555543...33 PP

        Fez1  113 aa................lesdeakaqrqe...........aeeleelkreverlraeLkeerqkkeeqa.ssFeqERrtWqeeK 169 
                  a+                           e            +e+++l++++++ +++L e r k ++q+ ++ ++ER t +++K
  KKY23593.1 1227 ATstgdlqnlqevikylrR----------EkeivdvqyhlsLQESKRLRQQLDHSQSQLDETRLKLDQQRrAEADTERATLNHNK 1301
                  3323466554433333221..........24566555666677788888888888888888887766664146677887766665 PP

  == domain 12  score: 13.7 bits;  conditional E-value: 1.5e-05
        Fez1   18 QLkdsqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa 114 
                   L ++ +e++   +  v+l+aq++e++++l+e+ ++++el +++e  +  + ++en l+ ++ e ++++e  ++  + ++++  +++++ +ee ea+
  KKY23593.1 1301 KLMETLNELNLFRESSVTLRAQFKEAETNLTERSRQVQELTSQIEPLQIRIGELENVLETREGELKIISEDRDRWRDRTNNIMAKYNRVDPEEVEAQ 1397
                  5777778888888899****************************************************99999999999999999999888877776 PP

        Fez1  115 lesdea..kaqrqeaeeleelkreverlraeLkeerqkk 151 
                  +e+ +a  k++ ++  e ++l+ e++   +++++ +q  
  KKY23593.1 1398 KEKLAAlqKERDEAVAEKAQLQTEIDSFPERIETAKQDL 1436
                  444433114444446677788888888888888887763 PP

  == domain 13  score: -6.2 bits;  conditional E-value: 4
        Fez1   25 evtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrk............................kseaellrekvekle 93  
                  ++ ++l+e    k++ ++l++++ ek++e++ ++++ ++ +++l+ +++el+ +                            ++++  l+ ++ + e
  KKY23593.1 1435 DLRSRLGEQ--FKTRSKQLTTRIAEKQSELDAANAEKSNLETQLQSVKEELETArsaptaepqtngdpmvgisdqstriqelEARVAQLESTAVSKE 1529
                  555566664..45666777778888888888877777777777777777777776777777777777766666665555554666666666666666 PP

        Fez1   94 eelkelreelselsleeeeaalesdeakaqrqeaeeleelkreverlraeLkeerqk 150 
                  +el+ lr e++++++e+e + +++ +++a + ++e+ ++lk+ +e  +++Lk  +++
  KKY23593.1 1530 QELQALRAEYEQKTKEREAELKQALAQQATKLRSEHEASLKNALETAEGRLKASHER 1586
                  666666666666555555555555555555555666666666666666666655554 PP

  == domain 14  score: -8.1 bits;  conditional E-value: 4
        Fez1   43 lrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa......................... 114 
                   +++++e e+++ +le+++ +k++el+ + +e ++k++e e   +  ++l ++ ++lr+e +++ +++ e+a                         
  KKY23593.1 1507 QSTRIQELEARVAQLESTAVSKEQELQALRAEYEQKTKEREAELK--QALAQQATKLRSEHEASLKNALETAegrlkasherelhaarsqdtqqppa 1601
                  455666666666666666666666666666666655333222111..22222222222222222211111112223333455555556666666777 PP

        Fez1  115 ..........................................................lesdeakaqrqe........................... 126 
                                                                            +          +                           
  KKY23593.1 1602 spqqqkpaenatngvaaspttasadelpalsdaqvrllvqknelvrtilrnniqkavaK----------Akedakkdlqaaadaaeasvsssafeal 1688
                  77777888888888888888888888888888888888888888877777775544441..........0223344566678888888888888888 PP

        Fez1  127 .aeeleelkreverlraeLkeerqkk.eeqassFeqERrtWqeeKekVir 174 
                   +++++e ++  ++lr +L++e+++  +eq+++F +E+ t ++e ek i 
  KKY23593.1 1689 eKKHTTEKDSLANELRMKLNNEKEAAlKEQEEKFSNEKLTFSKESEKKIA 1738
                  77788888888999******99987538899***************9876 PP

>> CdiI  CDI immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.6     0.017        75      55     100 ..     602     648 ..     566     655 .. 0.74
   2 ?    8.1   3.0   0.00047       2.1      37      93 ..    1693    1748 ..    1679    1762 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.017
                 -B-SHHHH.HHH-HHHHHHHHHHH.HHHHHHHHT-S-HHHHHTT-EE CS
        CdiI  55 reiepedsddifdkekvkerykee.ekkimeeygYkskkalfkkmdf 100
                 +e+  ++ +++ +  ++   yk+e ++ i ++ +Y   + +f+ m +
  KKY23593.1 602 DEVRQKEREELEQLRVKVATYKDElQAMITQSRSYVKERDMFRSMLT 648
                 45555555566555555666776616678899************975 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00047
                  T--HHHHHHHHHHHHHT--B-SHHHH.HHH-HHHHHHHHHHHHHHHHHHHT-S-HHH CS
        CdiI   37 dvsdselGkairkaLsksreiepedsddifdkekvkerykeeekkimeeygYkskka 93  
                  ++++ +l +++r +L++ +e  ++++++ f +ek+  + ke ekki  ++    k++
  KKY23593.1 1693 TTEKDSLANELRMKLNNEKEAALKEQEEKFSNEKL-TFSKESEKKIADQVAMAEKRS 1748
                  677889*************************9887.58999*****99988777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2028 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3739  (0.208545); expected 358.6 (0.02)
Passed bias filter:                      644  (0.0359195); expected 358.6 (0.02)
Passed Vit filter:                       269  (0.0150036); expected 17.9 (0.001)
Passed Fwd filter:                       141  (0.00786435); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 6.83u 0.47s 00:00:07.30 Elapsed: 00:00:01.29
# Mc/sec: 4767.34
//
Query:       KKY23594.1  [L=249]
Description: putative transcription initiation factor beta [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-21   75.4   0.3    5.1e-21   74.1   0.3    1.7  1  TFA2_Winged_2  TFA2 Winged helix domain 2
    1.5e-16   60.4   0.9    1.5e-16   60.4   0.9    2.0  2  TFIIE_beta     TFIIE beta subunit core domain
     0.0023   18.0   0.0     0.0046   17.0   0.0    1.4  1  DUF1797        Protein of unknown function (DUF1797)
  ------ inclusion threshold ------
      0.017   15.0   0.4       0.03   14.2   0.4    1.5  1  DUF5067        Domain of unknown function (DUF5067)


Domain annotation for each model (and alignments):
>> TFA2_Winged_2  TFA2 Winged helix domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.3   1.1e-24   5.1e-21       1      61 []     108     168 ..     108     168 .. 0.99

  Alignments for each domain:
  == domain 1  score: 74.1 bits;  conditional E-value: 1.1e-24
  TFA2_Winged_2   1 rnkeeLlalLkkrpkaeGikvkdLkdswpdveealeeLeaegeilvlrtkkdgqpkiVfwN 61 
                    rn+++Lla+L+ +++a+Gi+v++Lkd+w dve+++++Le++g+ lv+r+kk++ p++V++N
     KKY23594.1 108 RNADQLLAYLQAQKTAKGISVRELKDGWEDVETTINDLEDKGQLLVIRNKKNNDPRTVWPN 168
                    89**********************************************************9 PP

>> TFIIE_beta  TFIIE beta subunit core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.9   3.4e-20   1.5e-16       3      68 .]      41     107 ..      39     107 .. 0.93
   2 ?   -1.8   0.0      0.85   3.8e+03      20      26 ..     127     133 ..     111     163 .. 0.54

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 3.4e-20
  TFIIE_beta   3 tqLakiveylKkkdg.plsleeIlsylslqldlsdknwllleaLknnpkieyDpkkgkfsfkPlyni 68 
                 tq++++++ylK+k+  p ++ +I  yls+q   ++++++  + L +n k++yDpk+++f f+Pl++i
  KKY23594.1  41 TQVVYAIKYLKSKGDqPQKIGDIILYLSIQNTSDEHQREFKRKLIQNSKVNYDPKTETFTFRPLHDI 107
                 9***********6555*************7777799******************************9 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.85
  TFIIE_beta  20 sleeIls 26 
                 s+ e+ +
  KKY23594.1 127 SVRELKD 133
                 4444433 PP

>> DUF1797  Protein of unknown function (DUF1797)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     1e-06    0.0046      11      46 ..      70     105 ..      65     111 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1e-06
     DUF1797  11 eedsevqkrrFekeGeevaeVsydektetfeLeeve 46 
                 +++s+ ++r+F+++  +  +V+yd+ktetf+++  +
  KKY23594.1  70 QNTSDEHQREFKRKLIQNSKVNYDPKTETFTFRPLH 105
                 5778899************************98655 PP

>> DUF5067  Domain of unknown function (DUF5067)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.4   6.8e-06      0.03      45     124 ..      63     143 ..      31     160 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.8e-06
                 EEEEEEEEE-SS-TTBCHHHHHHHEEEEEE...EEE--B---S--TT...HHHCCCCSEE-TTSEEEEEEEEE-TTTTS-EEEEEE CS
     DUF5067  45 lvvyyeftNnsdeeispssavsvylkAyQn...gveLetailaddek...dkldnldkeikpgktvevviaYeLqdtdspvtvevs 124
                 +++y +++N+sde ++     +   k  Qn   +++ +t ++++ +    +++d+l + +++ kt+++  + eL+d + +v+ +++
  KKY23594.1  63 IILYLSIQNTSDEHQR---EFKR--KLIQNskvNYDPKTETFTFRPLhdiRNADQLLAYLQAQKTAKGISVRELKDGWEDVETTIN 143
                 789*************...4555..888888554445555555555588888*****************************97765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       840  (0.0468515); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 1523.33
//
Query:       KKY23595.1  [L=371]
Description: putative ser thr protein phosphatase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-10   42.4   0.0    1.5e-10   41.9   0.0    1.2  1  Metallophos    Calcineurin-like phosphoesterase
    0.00018   21.8   0.0     0.0018   18.5   0.0    2.1  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   1.7e-14   1.5e-10       2     203 ..      11     265 ..      10     266 .. 0.63

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 1.7e-14
                  EEEEEESBTB...........TTCCTHHHHHHHHHHHHHHH...TTESEEEEESTSSSSS..HHHHHHHHHHHHHHHHTSEEEEEC-TTS........ CS
  Metallophos   2 rilvigDlHl...........algggqlddllkllddllre...ekpdlvllaGDlvdrg..dlekellellaalvkypipvylllGNHe........ 75 
                  ++l+++D+H            + ++ +  +  ++l++ l++   + p ++++aGDl+ +g  +  + + +++a   +    +++++GNH+        
   KKY23595.1  11 NFLLLSDTHAfspppynspgsEQCPDDSIKRGRILRHPLPNistPTPTVLIHAGDLTMTGlsSEMTTTYNFIASHPA--ELKIVIPGNHDttldvpyy 106
                  699********8888888777777777777777777765556669***************54222223333444444..355********99998766 PP

                  ..........CHHHHHHHHHHHHHHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE..........CEEETHHHHHHHHHHHSCHHHHCCHHHHHH CS
  Metallophos  76 ..........gfeeellnkygylgifsepwrsdaevfnnlplaslgsgslkvlllhGg..........spellvsldklgslnleleapepgdewlkd 153
                            g     +   +++    ++w  ++ +  ++   + g   +k +++ +g          +pe+         + +e+++++ ++ + ++
   KKY23595.1 107 qsvgsrrfhsG---PASGGPQDIRQIRDLWTGETAKSKGIAYMEEG---IKSFTVSNGasftvyvsawTPEF-----CNWAFAYERDEDRFNHSISNQ 193
                  66666633331...22222222222244444444444444444422...44555555545533333444444.....444444444444444333333 PP

                  .....HHHHTTCSEEEEEESSESS.................CSSSCSCCHHHHHHHHHHTTESEEEEESSSS CS
  Metallophos 154 .....lekrekadwvivlgHsply.................rgsgylfgdealedllkkygvdlvisGHtHv 203
                       +  ++  +++i+++H p+y                 +  + + g + l +   + ++ l ++GH+H+
   KKY23595.1 194 dqqpkNPIPDFPEIDIIITHGPPYgfldptypriypssstqSTFSIPVGCKNLLKAVHRSKPLLHVFGHIHE 265
                  5667778888999***********999999887777776665556666666666888888899********7 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0     2e-07    0.0018       3     129 ..      12     265 ..      10     279 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2e-07
  Metallophos_2   3 laiiSDlH....................snldaleavlealkevgvdaiihaGDl....eeeepevleellela...pvlaVrGNnD......... 62 
                    ++++SD+H                    +++++l++ l  ++  ++  +ihaGDl      +e ++++++++       ++++GN+D         
     KKY23595.1  12 FLLLSDTHafspppynspgseqcpddsiKRGRILRHPLPNISTPTPTVLIHAGDLtmtgLSSEMTTTYNFIASHpaeLKIVIPGNHDttldvpyyq 107
                    899*********************999999999999999999999*********8754334444577777777688545689**********9999 PP

  Metallophos_2  63 ......................................................................eevveedvlreaaelgtdlpeeaele 88 
                                                                                           ++ +ed+ +++   +++ p+    +
     KKY23595.1 108 svgsrrfhsgpasggpqdirqirdlwtgetakskgiaymeegiksftvsngasftvyvsawtpefcnwafAYERDEDRFNHSISNQDQQPKNPIPD 203
                    999999999999999999999999999999999999998888888888888877777777765544333311122333333333333344555555 PP

  Metallophos_2  89 lagekvlliHgdpl....................gvkdalaellkeaeegsd.vvvcGHtHv 129
                    +++ ++ ++Hg p+                    + + + ++llk+    +  + v+GH+H+
     KKY23595.1 204 FPEIDIIITHGPPYgfldptypriypssstqstfSIPVGCKNLLKAVHRSKPlLHVFGHIHE 265
                    56666999999988999999999999999999997777777777775555556999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2431.23
//
Query:       KKY23596.1  [L=401]
Description: putative translocation protein sec62 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-75  251.5   1.1    6.1e-75  251.5   1.1    2.2  2  Sec62           Translocation protein Sec62
     0.0028   17.9  10.1       0.11   12.7   0.5    2.3  2  MPM1            Mitochondrial peculiar membrane protein 1
  ------ inclusion threshold ------
      0.015   15.3   3.9      0.024   14.6   0.2    2.3  2  Mucin           Mucin-like glycoprotein
      0.085   13.6   2.6      0.093   13.5   0.0    2.3  3  DUF4512         Domain of unknown function (DUF4512)
       0.21   11.6   2.4       0.52   10.3   2.4    1.7  1  Pyr_excise      Pyrimidine dimer DNA glycosylase
        0.8   10.4   0.1        0.8   10.4   0.1    4.1  4  RRP14           60S ribosome biogenesis protein Rrp14


Domain annotation for each model (and alignments):
>> Sec62  Translocation protein Sec62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   7.3      0.62   1.8e+03      33      81 ..      45      93 ..      16     114 .. 0.34
   2 !  251.5   1.1     2e-78   6.1e-75       1     213 [.     138     348 ..     138     356 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.62
       Sec62 33 evkkkekaekvfkelkksqlalrveklkekekkkkkeekkkkkkkkkkv 81
                +++k+ +ae +++ l  ++   +++++  ++++ +++ +++++ +++++
  KKY23596.1 45 QQRKALEAEAAKRGLAPQEYFNQLRQQAIQQAQMQQQMRQQQQAQQQQP 93
                1111112222222222222222222222222111111111111111111 PP

  == domain 2  score: 251.5 bits;  conditional E-value: 2e-78
       Sec62   1 kkkdffrakkvvralksekekkkskkkkeklkevkkkekaekvfkelkksqlalrveklkekekkkkkeekkkkkkkkkkvkleieeeqefvddnevYv 99 
                 ++k++f++k+++ral+s++++k+++kk++ l+evk++++a+++ ++l+ s+lalrv+k + ++ + ++  kk+ k+ k+ +++++e++qef ++ ++Yv
  KKY23596.1 138 QRKEMFKVKRALRALQSPAYAKAQSKKNSLLPEVKDEATAKDALRLLPLSMLALRVTKGDPHDGHGHEMPKKDPKRIKGLWTVKVERNQEF-EPLMHYV 235
                 689********************************************************999999998899********************.******* PP

       Sec62 100 WiYepkqlktlligllvvvailavvlFPLWPaelrkgvyYLSiaalgllglilalaivRlilflivllvtkgklhlWlfPnlfeDvGfldSFrPlYeye 198
                 W+Ye++q+k+++++++++vai+avv+FPLWP +lr+gv+YLS +++gllgl++a+a++Rl+lf++++++++++  lWl+PnlfeDvGf+dSF+Pl++++
  KKY23596.1 236 WLYEGPQWKQKAMAVGALVAIIAVVMFPLWPLVLRQGVWYLSAGMIGLLGLFFAMALFRLVLFCVTVFIVPPG--LWLYPNLFEDVGFFDSFKPLWGWH 332
                 *************************************************************************..************************ PP

       Sec62 199 ekd.kkkkkkkkkkkk 213
                 e++ +kk+ +k kk  
  KKY23596.1 333 EDKqAKKQARKAKKAA 348
                 6442222222222222 PP

>> MPM1  Mitochondrial peculiar membrane protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   3.6   0.00051       1.5      39     108 ..      24     104 ..      15     151 .. 0.60
   2 !   12.7   0.5   3.8e-05      0.11      68     132 ..     321     388 ..     317     399 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00051
        MPM1  39 llkkkkkklkdeiltkEdvendkkhky...........GlFFkeftdyLnWksemkelikekreeeikkkkeeekkkkese 108
                 ++++   + k++ lt  +++++ ++               +F++  +    +++m++++++++++++++ +++ ++ +++ 
  KKY23596.1  24 MQAQMAAEAKKRGLTPQQFQEQQRKALeaeaakrglapQEYFNQLRQQAIQQAQMQQQMRQQQQAQQQQPQQQGQTVQQQV 104
                 445555566788999999999888877789999944433455555555555555555555555555444444444433333 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.8e-05
        MPM1  68 FFkeftdyLnWksemkelikekreeeikkkkeeekkkkese.ktkedlmlkkssek..dskkkvvsss 132
                 FF++f+ +  W ++++ + + ++ ++ +k ++ +kk+ +++  t++ +   +s+++  ++ +  v++s
  KKY23596.1 321 FFDSFKPLWGWHEDKQAKKQARKAKKAAKAEKAAKKSGSTDtITPKATDAGTSATTtaSQASPTVGHS 388
                 9***********99999888888888887777776665555334444444444443222344455555 PP

>> Mucin  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.6     0.097   2.9e+02      29      62 ..      79     112 ..      69     134 .. 0.73
   2 ?   14.6   0.2     8e-06     0.024      53     105 ..     346     396 ..     288     400 .. 0.54

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.097
       Mucin  29 Gqsdaavveaaegqskltttttttkppttttttt 62 
                  q+  ++ +a++ q++++  t+  + p  + ++ 
  KKY23596.1  79 QQQMRQQQQAQQQQPQQQGQTVQQQVPVNPGVPA 112
                 3455677889999999999999999999888876 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 8e-06
       Mucin  53 kppttttttttasttittkttkattttttttttttateaPsdavttaeaPttt 105
                 k++ + ++++  s +++t t kat +  t++ttt++  +P+   +t +aP  +
  KKY23596.1 346 KAAKAEKAAK-KSGSTDTITPKATDAG-TSATTTASQASPTVGHSTHRAPQVE 396
                 2222222222.2333333333333332.2334444445555555666666554 PP

>> DUF4512  Domain of unknown function (DUF4512)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.9   5.6e+03      52      81 ..       4      33 ..       2      57 .. 0.45
   2 ?   -2.4   0.1       2.9   8.6e+03      69      69 ..      84      84 ..      43     107 .. 0.56
   3 ?   13.5   0.0   3.1e-05     0.093       2      79 ..     299     385 ..     298     399 .. 0.60

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.9
     DUF4512 52 GGvcPfvpgskksdaksdadaeeseksesa 81
                GG  P  ++++ ++ +  a+ + + ++e++
  KKY23596.1  4 GGPVPPQGQATPQQLAQMAQMQAQMAAEAK 33
                555554444443333333322222222222 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.9
     DUF4512 69 d 69
                +
  KKY23596.1 84 Q 84
                1 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 3.1e-05
     DUF4512   2 CvPCiiiPlLlyiykkf.........vePivlryinPwekkdaegnvikagpefPfeckGGvcPfvpgskksdaksdadaeesekse 79 
                 Cv  +i+P  l++y +           +P+ + + +   kk+a +    a +e  ++ +G +  ++p+++++ +++ ++a++++ + 
  KKY23596.1 299 CVTVFIVPPGLWLYPNLfedvgffdsFKPLWGWHEDKQAKKQARKAKKAAKAEKAAKKSGSTDTITPKATDAGTSATTTASQASPTV 385
                 ***************984555544444444444434333443333333334588888889999999999888877666443333222 PP

>> Pyr_excise  Pyrimidine dimer DNA glycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.4   0.00018      0.52      57     124 ..      17      90 ..      15     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
                 BHHHHHHHHHHHHHHHHHTT---S--S----TTS-..........GGGB------HHHHHHHHHHHHHHHTTSGGG-- CS
  Pyr_excise  57 kleyLrkrylllieEmlkRgynvneeekddiseve..........keyrgdwtpteeaialnleriaekipikpehdk 124
                 +l+++ + ++++ +E +kRg ++++ ++++ + +e          +ey+++  ++    a++++++++++ +++++++
  KKY23596.1  17 QLAQMAQMQAQMAAEAKKRGLTPQQFQEQQRKALEaeaakrglapQEYFNQLRQQ----AIQQAQMQQQMRQQQQAQQ 90 
                 57889999****************9999977777666777888888888887777....7777777777777777665 PP

>> RRP14  60S ribosome biogenesis protein Rrp14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   2.9      0.56   1.7e+03      37      55 ..      32      50 ..      14      58 .. 0.65
   2 ?   -3.0   7.8         4   1.2e+04      21      50 ..      64      93 ..      57     102 .. 0.46
   3 ?   -1.7   0.5       1.6   4.7e+03      37      57 ..     144     165 ..     136     170 .. 0.53
   4 ?   10.4   0.1   0.00027       0.8      34      51 ..     335     352 ..     298     357 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.56
       RRP14 37 kqkkkkakkqtkeeskkaK 55
                 +k+  +++q +e+++ka 
  KKY23596.1 32 AKKRGLTPQQFQEQQRKAL 50
                4555556777788888853 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4
       RRP14 21 Ylpkdeeeednskklkkqkkkkakkqtkee 50
                Y+ +  ++  ++ ++++q ++++++q+++ 
  KKY23596.1 64 YFNQLRQQAIQQAQMQQQMRQQQQAQQQQP 93
                444332233333334444444444444332 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.6
       RRP14  37 kqkkkkakkqtkeeskka.Kra 57 
                 k k++ ++ q+ + +k++ K++
  KKY23596.1 144 KVKRALRALQSPAYAKAQsKKN 165
                 5555555556644444432554 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00027
       RRP14  34 klkkqkkkkakkqtkees 51 
                 k+ k++ +kakk++k+e+
  KKY23596.1 335 KQAKKQARKAKKAAKAEK 352
                 222222222333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3733  (0.20821); expected 358.6 (0.02)
Passed bias filter:                     1031  (0.0575046); expected 358.6 (0.02)
Passed Vit filter:                       144  (0.00803168); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.89u 0.37s 00:00:01.26 Elapsed: 00:00:00.51
# Mc/sec: 2384.09
//
Query:       KKY23597.1  [L=1060]
Description: putative nadph-adrenodoxin reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-43  148.4   0.0    4.2e-43  147.6   0.0    1.4  1  RasGEF       RasGEF domain
    1.3e-09   38.3   0.0    4.5e-09   36.5   0.0    1.9  2  RasGEF_N     RasGEF N-terminal motif
  ------ inclusion threshold ------
      0.022   14.0   0.0      0.076   12.2   0.0    1.7  2  Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
      0.071   12.9   0.3       0.31   10.9   0.1    2.1  2  DUF2185      Protein of unknown function (DUF2185)


Domain annotation for each model (and alignments):
>> RasGEF  RasGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.6   0.0   9.4e-47   4.2e-43       1     176 [.     322     504 ..     322     505 .. 0.93

  Alignments for each domain:
  == domain 1  score: 147.6 bits;  conditional E-value: 9.4e-47
      RasGEF   1 elAeqltlieaelfskikpeellgsa.wsked..rs...pnveaviarfnrlsnwvaseilseeslkkRakviekfikiakecrklnNfnslmailsaL 93 
                 ++A+++t+i++ ++s+i+p++l++++  + e+  +s   +nv+++i++fn+++ +v+s+il ++++k+Ra ++ekf++ia+++r+lnN+nsl ++++++
  KKY23597.1 322 DIAREMTRIDWIMYSSIRPRDLIRHVsLTGEKkeKSrslENVNRMISHFNHIALFVSSMILLRDKPKHRALALEKFMHIAWKLRQLNNYNSLGSVIAGI 420
                 69**********************96433333441145899********************************************************** PP

      RasGEF  94 qsspvsrLkktweavskkslktleeleelmspennfknyrealkssasskpciPflglyltdltfieegnpdtl..egk.iNfeKr 176
                 + ++++rL  t e v++  +k++ +l  lm + +++ +yr a+++s+s+k  iPfl l+ +dl+  e+gn++++  +g+ iN++K+
  KKY23597.1 421 NGTAIHRLALTRELVPPPVQKEFMRLVILMGTGKSHFAYRLAWDNSFSEK--IPFLPLHRRDLVAAEDGNKTFVgpNGDrINWKKF 504
                 **********************************************7666..************************8888*****8 PP

>> RasGEF_N  RasGEF N-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0     1e-12   4.5e-09       6     101 ..      83     171 ..      78     178 .. 0.79
   2 ?   -3.4   0.0       2.5   1.1e+04      45      60 ..     987    1002 ..     984    1028 .. 0.60

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 1e-12
    RasGEF_N   6 tlekLierLtsk.rlldd.dfletFLltyrsFttpaeLlekLieryeinppnnlesdesnswnsksssnirlrvlsvlkewvenhyydfsddkallsk 101
                  +++L++rL++      + +f+ +FL+ yr F  p+ Ll+++++ +e   ++++ +         +    +lr l+vl +w ++++ dfs +  ++ +
  KKY23597.1  83 PFDELVDRLLALpMSKAEgKFVPVFLCLYRKFAAPNLLLTAILAKFEKVDKSGEAQL--------TRVGEQLRYLQVLAQWTNEYPGDFSYPT-TRNE 171
                 5789********5444556***************************33333333333........4455899*****************9986.5444 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.5
    RasGEF_N   45 Lieryeinppnnlesd 60  
                  + ++y+++++nn+e++
  KKY23597.1  987 MDHHYHHQQQNNSETK 1002
                  5578865666655555 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.7e-05     0.076     100     214 ..     659     807 ..     654     827 .. 0.71
   2 ?   -2.0   0.0      0.36   1.6e+03     228     278 ..     891     953 ..     885     964 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.7e-05
                  ESEEEE---.EEE-BCTCTTC.........TTBEECCSECHHHHHHCCSS-T.SEEEEES-SHHHHHHHHHH.HHHT-.................... CS
                  xxxxxxxxx.xxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.xxxxx.................... RF
  Pyr_redox_2 100 ydklvlAtG.ssprdlgipGv........aenvgklvrtldsaealklkllp.krivvvGgGyiGvElAaal.aklgk.................... 166
                  yd+++   G s+ r lg+pG+        a   +     l + + l+ +l+  +++v++G G++++++A +l +++ +                    
   KKY23597.1 659 YDSILFSYGaSEDRELGLPGEretrniysARAFVGWYNGLPEYRDLNPDLTSgEDAVIIGQGNVALDVARVLlSDIDVlrktdmtdyalstlassrik 756
                  9********5588999*****77776666444444446677777777777669******************545555555555566666666667775 PP

                  EEEEEESSSSSSTTS-.HHHHHHHH..HHHHHTTEEEEESCEEEEEEETTE CS
                  xxxxxxxxxxxxxxxx.xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 167 evtlveardrllrald.kelsaale..ealekeGvevklgtsvkeidgnge 214
                  +v +v +r  +  a+  ke+++ ++  ++++k  +++ + +++ ++ + ++
   KKY23597.1 757 NVRIVGRRGPVQAAFTiKEIRELMQlpNVVNKTAIDFLTDEQISTLPRATK 807
                  788888888888555558888777644677777777777777777666666 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.36
                  ESEEEE-S-EEES-HHCS.HCCT-EE.EETTEEE--TTS..........BESSTTEEE-GGGC CS
                  xxxxxxxxxxxxxxxxxx.xxxxxxx.xxxxxxxxxxxx..........xxxxxxxxxxxxxx RF
  Pyr_redox_2 228 adlvvvavGvrpstelle.eklglel.derggivvdefl..........rtnvpgiyaiGDva 278
                  + +++ ++G++  +      +lg++  ++rg i  d+++          +   pg+ya+G v 
   KKY23597.1 891 CTTLFRSIGYKSLPLPTLtTDLGIPFdTSRGIIPNDPSGriitkgtsgqEIPLPGLYAAGWVK 953
                  555566666654443322466666663233333333333333333335445689999999776 PP

>> DUF2185  Protein of unknown function (DUF2185)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   6.9e-05      0.31      20      45 ..     197     222 ..     180     237 .. 0.79
   2 ?   -2.7   0.0       1.2   5.3e+03      15      40 ..     990    1015 ..     985    1022 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.9e-05
     DUF2185  20 eepeeenDSGWrffagdesdeyindk 45 
                 e+ + ++D+GW f  g e+d  i+ +
  KKY23597.1 197 EHVATDDDTGWAFHDGAEDDATIESA 222
                 5556679*************999875 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.2
     DUF2185   15 gymyReepeeenDSGWrffagdesde 40  
                   y  ++++++e+  GW  ++ + ++e
  KKY23597.1  990 HYHHQQQNNSETKGGWPAVQSSAETE 1015
                  67788889999999**9887665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1060 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.51
# Mc/sec: 6252.79
//
Query:       KKY23598.1  [L=198]
Description: hypothetical protein UCRPC4_g02861 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   11.6  18.9      0.086   12.7   3.3    2.2  2  DUF1168   Protein of unknown function (DUF1168)
        1.1    9.7  10.1       0.77   10.1   5.1    2.7  2  DUF1840   Domain of unknown function (DUF1840)


Domain annotation for each model (and alignments):
>> DUF1168  Protein of unknown function (DUF1168)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   7.8    0.0025        22      72     125 ..      41      90 ..      14     106 .. 0.46
   2 ?   12.7   3.3   9.6e-06     0.086      44      96 ..     137     189 ..     135     194 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0025
     DUF1168  72 leenkeeaeektaKkrakRekkkqkakkkkkakkkkkkekekeeksedseekse 125
                 l+ ++++a ++ +++r+ R+ ++ +a +k+ +      ++ ++++++++ ++ +
  KKY23598.1  41 LRAQQKAARARHDQRRKERDARQMAASDKSLKPA----QTGSHKTRRSQATNAK 90 
                 2233333444444444444444422222222222....2222222221111111 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 9.6e-06
     DUF1168  44 lRrrEyeRlklieekskkeeedeefqqkleenkeeaeektaKkrakRekkkqk 96 
                  RrrE+ R k  + k   ++e   fq+ +++ k++ ++++   r kR+ ++ +
  KKY23598.1 137 TRRRENTRAKRYTGKDGPQREAVPFQATVAKTKDKPDSRSFSARDKRQSQRIE 189
                 6***********************************************99933 PP

>> DUF1840  Domain of unknown function (DUF1840)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.1   8.5e-05      0.77      30      73 ..      22      79 ..       1     136 [. 0.72
   2 ?   -0.4   0.2      0.16   1.4e+03      51      62 ..     163     174 ..     128     194 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 8.5e-05
     DUF1840 30 slterGaitaedlpaaiakLeaaiaaekaeeaeeeeeeeeeek..............e 73
                +++ +G + aedl + +++L+a+ +a++a+++++++e+++++               +
  KKY23598.1 22 DTSRHGNFDAEDLCQRLENLRAQQKAARARHDQRRKERDARQMaasdkslkpaqtgsH 79
                47899*********************99999999999888776666666655555440 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.16
     DUF1840  51 aaiaaekaeeae 62 
                 a +a+ k+++++
  KKY23598.1 163 ATVAKTKDKPDS 174
                 334444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1745  (0.0973284); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.33s 00:00:00.90 Elapsed: 00:00:00.52
# Mc/sec: 1137.03
//
Query:       KKY23599.1  [L=173]
Description: putative hira-interacting protein 5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-28   96.4   0.1    1.3e-27   95.8   0.1    1.3  1  NifU      NifU-like domain
    0.00053   20.0   0.1     0.0064   16.5   0.0    2.2  2  Nfu_N     Scaffold protein Nfu/NifU N terminal


Domain annotation for each model (and alignments):
>> NifU  NifU-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.1   1.4e-31   1.3e-27       1      67 []      63     129 ..      63     129 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 1.4e-31
                 HHHHHHH.HGGG--GG--EEEEEEEETTEEEEEEESGGGG-....THHHHHHHHHHHHH-TT--EEE CS
        NifU   1 ieevleeeirPaLasdGGdielvdvdegvVkvrlqGaCsgCpsstvtlkegiekaLkeevpevkeVe 67 
                 i+e+le++irPa+++dGGdie+ ++ +g+V ++l+GaC++C sstvtlk+gie++L+++++evk V+
  KKY23599.1  63 IKELLETRIRPAIQEDGGDIEFRGFHDGQVLLKLRGACRTCDSSTVTLKNGIESMLMHYIEEVKGVQ 129
                 89**************************************************************995 PP

>> Nfu_N  Scaffold protein Nfu/NifU N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   7.2e-07    0.0064      63      87 .]       2      26 ..       1      26 [. 0.93
   2 ?    1.1   0.0     0.047   4.2e+02      28      57 ..     109     136 ..      91     151 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7.2e-07
       Nfu_N 63 keddvdWeelkpevlevikeflesg 87
                k++d++W+++kpev+++i+e+++sg
  KKY23599.1  2 KAADANWAHIKPEVFALITEAVTSG 26
                7899*****************9986 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.047
       Nfu_N  28 efksaeeaasplakkLfkiegVksVfigsd 57 
                 + k+    +s l+  + +++gV++V+  ++
  KKY23599.1 109 TLKNGI--ESMLMHYIEEVKGVQQVLDQEE 136
                 444433..4777888888888888876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 1095.17
//
Query:       KKY23600.1  [L=641]
Description: putative psp1 domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-28   98.5   2.9    3.7e-28   97.6   2.9    1.5  1  PSP1      PSP1 C-terminal conserved region


Domain annotation for each model (and alignments):
>> PSP1  PSP1 C-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   2.9   2.1e-32   3.7e-28       3      86 .]     409     492 ..     407     492 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 2.1e-32
        PSP1   3 vlrlatpedvstnlenkqdeekalhiaqeklkelnlnmklldaefqfdrkkltfyYvaeervDFreLvkeLfkfyktRIwLcai 86 
                 + rla++++++t++e++ +e+ka +++q+k+ e++lnm++ldaefq+d kkltfyY a++ ++F +Lv +Lfk+yktRIw+ ai
  KKY23600.1 409 IKRLAQSHEIQTLREKEGNEAKAKRVCQQKVIEHRLNMEILDAEFQMDWKKLTFYYFADSYINFNSLVTDLFKIYKTRIWMSAI 492
                 88*******************************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.52
# Mc/sec: 3697.76
//
Query:       KKY23601.1  [L=262]
Description: putative 60s ribosomal protein l8 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-24   83.9   1.6    8.2e-24   83.2   1.6    1.4  1  Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 famil
     0.0003   20.9   0.1    0.00044   20.3   0.1    1.2  1  RNase_P_pop3    RNase P subunit Pop3
     0.0096   15.0   0.3      0.014   14.4   0.3    1.3  1  CLPTM1          Cleft lip and palate transmembrane protein 1 


Domain annotation for each model (and alignments):
>> Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   1.6   1.4e-27   8.2e-24       3      94 ..     122     214 ..     120     215 .. 0.94

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 1.4e-27
                     HHHHHHHHHHHTEEEESHHHHHHHHHTTTESEEEEETTSSSGGHHHHHHHHHHHTTEEEEEESCHHHHHHHTTSSSE.CSEEEEEESTTTHHH CS
  Ribosomal_L7Ae   3 ieevlkkakkagklvlGlkevtkalergeaklvilAedvepeekkkllealckekevpyvkvkskkeLGelvgkkrp.vsalaikdegdskdl 94 
                      +++  ++kk+ ++++Gl++v+ ++e ++a lv++A+dv+p+e + +l+alc++++vpy +vk+k++LG++v+kk++ v al+ ++++d+++l
      KKY23601.1 122 GKKKEDVSKKPYTVKYGLNHVVALIEAKKASLVLIAHDVDPIELVVFLPALCRKMGVPYAIVKGKARLGTVVHKKTAaVLALTEVKQEDKSEL 214
                     57888899********************************************************************99999999999998876 PP

>> RNase_P_pop3  RNase P subunit Pop3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   7.3e-08   0.00044      44     149 ..     123     222 ..      98     229 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 7.3e-08
  RNase_P_pop3  44 rlleskeneeseltvglneivelLecsesddvvllvcnkDtPsvLlsqlpllvavanltvklvqlpksaqakldeklGlskagmllvrkdasldkk. 139
                   + +e   +++  +  gln +v l+e ++++  vl++++ D P  L+  lp l+    +  ++v+     +a+l  ++ +++a +l++ +  + dk+ 
    KKY23601.1 123 KKKEDVSKKPYTVKYGLNHVVALIE-AKKASLVLIAHDVD-PIELVVFLPALCRKMGVPYAIVK----GKARLGTVVHKKTAAVLALTEVKQEDKSe 213
                   333446678999*************.99999999999999.************99986666664....56667777767788888888877777642 PP

  RNase_P_pop3 140 laklvskkve 149
                   l klvs+ ++
    KKY23601.1 214 LSKLVST-IN 222
                   5555555.65 PP

>> CLPTM1  Cleft lip and palate transmembrane protein 1 (CLPTM1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.3   2.4e-06     0.014     123     176 ..      82     137 ..      19     157 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.4e-06
      CLPTM1 123 dekydkksvvhktkqLtkylpkkkekktknLlkekeeeeeeeekeekpv..ivsyw 176
                 ++++d++ + ++ k L+ky p++k++k+  Llke ++ ee ++ke+ +   ++  +
  KKY23601.1  82 SNTLDRNAAAQTFKLLNKYRPETKAEKKERLLKEATAVEEGKKKEDVSKkpYTVKY 137
                 7889999****************************998888733332221123333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1068  (0.0595683); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.51
# Mc/sec: 1550.06
//
Query:       KKY23602.1  [L=921]
Description: putative spindle pole body [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-08   33.4   1.1      0.053   13.9   0.1    4.7  5  HEAT_2          HEAT repeats
    3.9e-07   29.9   0.2      9e-06   25.4   0.0    2.3  2  CLASP_N         CLASP N terminal
      6e-06   26.1   0.3        2.4    8.6   0.0    5.3  4  HEAT            HEAT repeat
    1.2e-05   25.4   0.5      0.043   13.9   0.3    2.9  2  Cnd1            non-SMC mitotic condensation complex subunit 
     0.0026   17.9   0.1      0.011   15.9   0.1    2.2  1  TAN             Telomere-length maintenance and DNA damage re
     0.0037   15.9   0.9      0.044   12.4   0.9    2.4  1  Adaptin_N       Adaptin N terminal region
     0.0084   16.6   2.1          3    8.5   0.0    4.2  4  HEAT_EZ         HEAT-like repeat
  ------ inclusion threshold ------
       0.03   14.6   5.5       0.12   12.6   0.0    3.6  4  HALZ            Homeobox associated leucine zipper
       0.11   12.1   0.1        1.1    8.7   0.0    2.2  2  DUF3730         Protein of unknown function (DUF3730)
       0.61    9.6   3.4       0.72    9.3   1.8    1.8  2  DUF334          Domain of unknown function (DUF334)
        1.2    9.6   3.1        3.2    8.2   0.1    2.7  2  FlaC_arch       Flagella accessory protein C (FlaC)
        1.9    7.3   9.9        4.9    5.9   9.9    1.6  1  Spc7            Spc7 kinetochore protein
        2.3    7.8   9.4       0.49   10.0   5.2    2.0  2  Syntaxin        Syntaxin
        2.6    7.9  15.2        0.8    9.5   0.6    3.3  3  DivIC           Septum formation initiator
        4.4    7.6   8.1         35    4.7   0.3    2.9  2  Spc24           Spc24 subunit of Ndc80
          5    7.3  11.1        3.2    7.9   0.1    3.3  2  bZIP_1          bZIP transcription factor
        6.3    7.2   7.4        7.2    7.0   0.9    2.8  2  TSC22           TSC-22/dip/bun family
        7.1    7.3   6.6    2.1e+02    2.6   6.6    2.9  1  YabA            Initiation control protein YabA
        7.2    5.6  10.1         15    4.5  10.1    1.5  1  Atg14           Vacuolar sorting 38 and autophagy-related sub
        7.5    6.2   8.6          3    7.5   4.3    2.3  2  TEX13           Testis-expressed sequence 13 protein family


Domain annotation for each model (and alignments):
>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       3.4   3.1e+03      41      66 ..      18      46 ..      13      55 .. 0.59
   2 !   13.9   0.1     6e-05     0.053      14      81 ..     109     188 ..     104     196 .. 0.72
   3 !    8.6   0.1    0.0028       2.5      12      58 ..     302     357 ..     298     396 .. 0.78
   4 ?    3.0   0.1      0.15   1.4e+02      33      56 ..     450     473 ..     373     473 .. 0.59
   5 ?    5.1   0.0     0.033        29      33      57 ..     450     477 ..     408     493 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.4
      HEAT_2 41 ededpavRraaaeaLgai...gdpealpa 66
                +++++ vR++  ea+++      +e+ pa
  KKY23602.1 18 THKNWKVRKEGYEAAVKTfevTPDESDPA 46
                67888899888888875433323333333 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 6e-05
      HEAT_2  14 pevrraairaLg...rignpea.lpaLvellededpavRraaaeaLgai....g....dpe.alpaLkellddddddvvRe 81 
                 p+ +++a++aL    +++ p+a ++ L+++l+++ p v +a  +aL a+    g    dp+ +l+aL++ + + d+ v R+
  KKY23602.1 109 PAAKANALEALMlyvELDKPDAlVEELFPALSHKQPKVIAATLNALTALfhayGvkiiDPKpVLKALAKPFGHADKNV-RA 188
                 67799*******98877777666***********************86544432223343337777777666654444.44 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0028
      HEAT_2  12 pdpevrraairaLgrignp.........ealpaLvellededpavRraaaeaLgai 58 
                   ++ r++a++aL +  n+         ++++a+ + ++d++  v  aaa+   ++
  KKY23602.1 302 TKWKERKEALDALSDVLNTprikdgpydDIVRAFAKSMKDANITVVIAAANCTEKL 357
                 67899*********5433335555577799********************876654 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.15
      HEAT_2  33 lpaLvellededpavRraaaeaLg 56 
                  +a +++l+d+++ +R a aeaLg
  KKY23602.1 450 ADATTKVLTDTSEVTRSAGAEALG 473
                 455555666666666666666665 PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.033
      HEAT_2  33 lpaLvellededpavRraaaeaLg...a 57 
                  +a +++l+d+++ +R a aeaLg   +
  KKY23602.1 450 ADATTKVLTDTSEVTRSAGAEALGtlmK 477
                 67788999***************94442 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.15   1.3e+02     177     226 ..     171     221 ..     114     222 .. 0.86
   2 !   25.4   0.0     1e-08     9e-06      55     212 ..     332     484 ..     300     499 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.15
     CLASP_N 177 iekslkkgleDanptVRetaRstfweffkvwPsrAksll.ssldpkvrkal 226
                 + k+l k    a+ +VR +a ++ +e+++   +  k+++ ++l+p  ++ l
  KKY23602.1 171 VLKALAKPFGHADKNVRAEASNLTVELYRWLKEALKAIFwNDLKPVQQQDL 221
                 56888888889**********************999999999999888766 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 1e-08
     CLASP_N  55 leailkalssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnasfsprilqvlsvalqdKnvqpReysaiw 153
                 + a++k++++   t++ ++    ++la  l ++++++   +++ ++++l  +K+ ++ + ++al+a++ ++s  ++ l  +   l++Kn+q ++ s+++
  KKY23602.1 332 VRAFAKSMKDANITVVIAAANCTEKLALGLRRSFAKYRSTIMSPMMERLKEKKQSVADALSAALDAIFGSTS-LSECLEDILGFLTNKNPQVKLESTKF 429
                 45788888888899999999999*************************************************.88888888899999************ PP

     CLASP_N 154 LkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfweffkvwPsrAk 212
                 L   l++       +  +  ++li ++ +k+l+D +   R++  +++ +++k++ +rA 
  KKY23602.1 430 LIRCLKNTR----DVPTNPEVKLIADATTKVLTDTSEVTRSAGAEALGTLMKIMGERAM 484
                 **9999998....7777777899************999999988888888888888875 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       1.1   9.7e+02      10      18 ..      18      26 ..      15      31 .. 0.86
   2 ?    4.7   0.0     0.049        43       3      27 ..     133     157 ..     131     160 .. 0.88
   3 ?    4.7   0.1     0.051        46       1      28 [.     331     358 ..     331     361 .. 0.85
   4 !    8.6   0.0    0.0027       2.4       8      30 ..     456     478 ..     454     479 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.1
                T-SSHHHHH CS
        HEAT 10 sDpspeVRe 18
                ++++++VR+
  KKY23602.1 18 THKNWKVRK 26
                799*****7 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.049
                 HHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgal 27 
                   l  +ls++ p+V +a+++aL+al
  KKY23602.1 133 EELFPALSHKQPKVIAATLNALTAL 157
                 568889****************998 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.051
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 ++ ++ k ++D +  V  aAa++  +la
  KKY23602.1 331 IVRAFAKSMKDANITVVIAAANCTEKLA 358
                 577899****************966665 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0027
                 HHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   8 llsDpspeVReaAakaLgalaev 30 
                  l+D+s   R+a a+aLg+l+++
  KKY23602.1 456 VLTDTSEVTRSAGAEALGTLMKI 478
                 589*****************986 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0022       1.9     117     157 ..     113     151 ..      99     216 .. 0.85
   2 !   13.9   0.3   4.8e-05     0.043      20     150 ..     329     461 ..     307     481 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0022
        Cnd1 117 itilefLlsyipkdkqeaeslveklcprlqhansavvlaai 157
                  + le+L+ y++ dk   + lve l p l+h++++v+ a++
  KKY23602.1 113 ANALEALMLYVELDKP--DALVEELFPALSHKQPKVIAATL 151
                 5678889999999888..88999999999999988877665 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 4.8e-05
        Cnd1  20 eylvepLrkrLkDedpyVRktaaivvakL...ilndmvkekg.flselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsew 114
                 + +v    k++kD + +V   aa +  kL   +++ + k +  ++s + + l++++++V +   aal  i   +   + + l di+  l ++  +++ +
  KKY23602.1 329 DDIVRAFAKSMKDANITVVIAAANCTEKLalgLRRSFAKYRStIMSPMMERLKEKKQSVADALSAALDAIFGST--SLSECLEDILGFLTNKNPQVKLE 425
                 567788899******************************999899*************************9987..79999*********999999999 PP

        Cnd1 115 gqitilefLlsyipkdkqeaeslveklcprlqhans 150
                 + +  +++L +  +  ++   +l+   + ++ + +s
  KKY23602.1 426 STKFLIRCLKNTRDVPTNPEVKLIADATTKVLTDTS 461
                 999999999888777777556666555555555555 PP

>> TAN  Telomere-length maintenance and DNA damage repair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   1.2e-05     0.011       5      59 ..     296     343 ..     293     460 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-05
         TAN   5 lrlLssskikeRnkaldeLkhllsskrnktslsdlkdkawheifeaLfklvekEk 59 
                  +++ s+k keR++ald L ++l+ +r       +kd  +++i++a  k ++   
  KKY23602.1 296 HDNIASTKWKERKEALDALSDVLNTPR-------IKDGPYDDIVRAFAKSMKDAN 343
                 5789**********************4.......577777777777776666555 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.9   4.9e-05     0.044     152     296 ..     129     477 ..      94     485 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.9e-05
                 C.HHHHHHHCTT-SSHHHHHHHHHHHHHH.........................HCCCCCCC.HHHHHHHCCHHHHH.....HCS-HHHHHHHHHHHCC CS
   Adaptin_N 152 q.lveeikellsdkdpgvvlaAvalleei.........................kkndrlll.kllpklvrrLcnll.....teldpwlqvkiiklltr 218
                 + lvee+  +ls k+p+v++a++++l+ +                         +kn r+ + +l  +l+r L+++l     ++l p  q  + kl+ +
  KKY23602.1 129 DaLVEELFPALSHKQPKVIAATLNALTALfhaygvkiidpkpvlkalakpfghaDKNVRAEAsNLTVELYRWLKEALkaifwNDLKPVQQQDLEKLFEK 227
                 446666777777777777777777777776666665555555555555544333222222223444444444444446666666666666666666666 PP

                 ---SSHHHH.......................................................................................... CS
   Adaptin_N 219 larqepeer.......................................................................................... 227
                 + ++ p+++                                                                                          
  KKY23602.1 228 VKEEAPPKQerftraqqaamaaaeesgkggasaveevgeeddggaaeevdvfdlaepvdilskipkdfhdniastkwkerkealdalsdvlntprikdg 326
                 666666666677777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 PP

                 ..............................................................................HHHHHHHCGGCGCSSCHHHHH CS
   Adaptin_N 228 ..........................................................................sk..kellesllnllqssnnaVlle 250
                                                                                           s   +e+le++l  l ++n+ V le
  KKY23602.1 327 pyddivrafaksmkdanitvviaaancteklalglrrsfakyrstimspmmerlkekkqsvadalsaaldaifgSTslSECLEDILGFLTNKNPQVKLE 425
                 77777777777777777777777777777777777777777777777777777777777777777666666655114588******************* PP

                 HHHHCC.......HCCCCSTHHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHH CS
   Adaptin_N 251 tvnliv.......elapknelivlavnaLvrllsskdenlryvaLrtllkivk 296
                 + ++++       +++ ++e ++l++ a  + l++  e +r +  ++l +++k
  KKY23602.1 426 STKFLIrclkntrDVPTNPE-VKLIADATTKVLTDTSEVTRSAGAEALGTLMK 477
                 ******66666555555555.9************99999**997777766654 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.2      0.13   1.2e+02      28      55 .]     130     157 ..     109     157 .. 0.85
   2 !    8.5   0.0    0.0033         3       1      50 [.     304     352 ..     304     353 .. 0.92
   3 ?   -2.4   0.0       8.1   7.2e+03      23      48 ..     366     391 ..     356     398 .. 0.69
   4 ?    0.6   0.0      0.94   8.4e+02      34      55 .]     458     475 ..     443     490 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.13
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaAagaLgnl 55 
                 +++ +L ++L++++++V aa++ aL++l
  KKY23602.1 130 ALVEELFPALSHKQPKVIAATLNALTAL 157
                 68899999999*************9876 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0033
     HEAT_EZ   1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAag 50 
                 w +R  A+ aL+ ++ + p+   +  ++i++a+++ ++d + +V  aAa 
  KKY23602.1 304 WKERKEALDALSDVL-NTPRIKDGPYDDIVRAFAKSMKDANITVVIAAAN 352
                 999********9888.79999999***************99999999986 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 8.1
     HEAT_EZ  23 qplvpeilpaLlalLnddsdeVRaaA 48 
                 +++ + i+ +++ +L+ ++++V  a 
  KKY23602.1 366 AKYRSTIMSPMMERLKEKKQSVADAL 391
                 56677889999999988888885543 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.94
     HEAT_EZ  34 lalLnddsdeV.RaaAagaLgnl 55 
                       d +eV R a a aLg l
  KKY23602.1 458 T-----DTSEVtRSAGAEALGTL 475
                 3.....56666677777777754 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.4       1.3   1.2e+03      19      33 ..     672     686 ..     671     695 .. 0.74
   2 ?    1.7   0.4      0.34   3.1e+02      22      41 ..     689     708 ..     682     714 .. 0.57
   3 ?   12.6   0.0   0.00013      0.12      15      38 ..     738     761 ..     736     766 .. 0.92
   4 ?   -2.0   0.0         5   4.5e+03      22      33 ..     764     775 ..     760     775 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.3
        HALZ  19 sdydsLkkenekLka 33 
                 ++ + L+ e+e+L +
  KKY23602.1 672 AELEELRLEKERLTK 686
                 567889999999987 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.34
        HALZ  22 dsLkkenekLkaelqeLkek 41 
                 d L+    kL ae+ eL ++
  KKY23602.1 689 DDLRSSSTKLTAEISELQNQ 708
                 44555555555555555543 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 0.00013
        HALZ  15 daLksdydsLkkenekLkaelqeL 38 
                 d L+++ + ++kene+Lk e+ +L
  KKY23602.1 738 DVLRTEIETVRKENERLKREVGRL 761
                 7899*****************998 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 5
        HALZ  22 dsLkkenekLka 33 
                 +sL +e+e+L+a
  KKY23602.1 764 ESLGRERESLLA 775
                 899999999975 PP

>> DUF3730  Protein of unknown function (DUF3730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0013       1.1     101     189 ..     111     202 ..      83     228 .. 0.83
   2 ?    0.7   0.0      0.36   3.2e+02      63     144 ..     302     395 ..     298     481 .. 0.49

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0013
     DUF3730 101 slAaslrdickhrPdqngedLvdaysavLvetesqvseaqalglelleaLcsa...evvdlakawkviqkklgley...rpevlkvllslfaila 189
                 ++A +l   + +    + ++Lv ++   L   + +++++ a  l++l aL+ a   +++d    +k+++k +g+     r+e +  +++l ++l 
  KKY23602.1 111 AKANALEALMLYVELDKPDALVEELFPAL---SHKQPKVIAATLNALTALFHAygvKIIDPKPVLKALAKPFGHADknvRAEASNLTVELYRWLK 202
                 44444555555555555555888888888...8888899999**********99988*****************9999**************997 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.36
     DUF3730  63 klwkgmdrvfpfLrpfllfs.........lskssssafardlieslaslAas......................lrdickhrPdqngedLvdaysavLv 130
                 ++wk+ +++ + L  +l++          +++  + + ++  i +++++A +                      +++ +k++ ++              
  KKY23602.1 302 TKWKERKEALDALSDVLNTPrikdgpyddIVRAFAKSMKDANITVVIAAANCteklalglrrsfakyrstimspMMERLKEKKQS-------------- 386
                 6677777777777777775477777666655555666666667777776666677555554444444444444422222222222.............. PP

     DUF3730 131 etesqvseaqalgl 144
                      v +a + +l
  KKY23602.1 387 -----VADALSAAL 395
                 .....112222222 PP

>> DUF334  Domain of unknown function (DUF334)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         3   2.7e+03      82     128 ..     181     227 ..     170     238 .. 0.67
   2 ?    9.3   1.8    0.0008      0.72      43     138 ..     672     760 ..     650     780 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3
      DUF334  82 katkdfrdkskkvrndfvdllqkklkrvdaeelkiilrkdvykvree 128
                 +a k+ r  +  +  ++ + l++ lk +  ++lk + ++d+ k+ e+
  KKY23602.1 181 HADKNVRAEASNLTVELYRWLKEALKAIFWNDLKPVQQQDLEKLFEK 227
                 55666667777777777777778888777777777777766655444 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0008
      DUF334  43 eelselkkqnklvvkylaeikeqqdlrekelkeikselkkatkdfrdkskkvrn....dfvdllqkklkrvdaeelkiilrkdvykvreeidrmlrevk 137
                  el+el+ ++  + k   +++        e             ++++++ ++ +    d +++  k+ + v a   +++lr ++  vr+e++r+ rev 
  KKY23602.1 672 AELEELRLEKERLTKLTDDLRSSSTKLTAEI-----------SELQNQNAQLIEdhtrDVLQIKAKETQLVRARGENDVLRTEIETVRKENERLKREVG 759
                 5555555444444444444443333222222...........23444443333300004444445666678899999********************98 PP

      DUF334 138 r 138
                 r
  KKY23602.1 760 R 760
                 7 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.5      0.94   8.4e+02       8      26 ..     690     712 ..     668     723 .. 0.60
   2 ?    8.2   0.1    0.0036       3.2      12      33 ..     740     761 ..     727     764 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.94
   FlaC_arch   8 klsklst....eletvkkeneel 26 
                 +l + st    e++ ++++n +l
  KKY23602.1 690 DLRSSSTkltaEISELQNQNAQL 712
                 34444442222555555555554 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0036
   FlaC_arch  12 lsteletvkkeneelsksveel 33 
                 l te+etv+kene l+ +v +l
  KKY23602.1 740 LRTEIETVRKENERLKREVGRL 761
                 5689999999999999988665 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   9.9    0.0055       4.9     154     239 ..     673     761 ..     664     778 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0055
        Spc7 154 dkelLekqeeeldellpeleeekaeleeeleklqeaaeeles...idkeeLeelreelaelkaeieekkkelaelqeqleeleekieel 239
                 + e+L  ++e l++l ++l++  ++l++e+ +lq+++++l +    d  ++++   +l+++  e + +++e+++++++ e+l+ ++  l
  KKY23602.1 673 ELEELRLEKERLTKLTDDLRSSSTKLTAEISELQNQNAQLIEdhtRDVLQIKAKETQLVRARGENDVLRTEIETVRKENERLKREVGRL 761
                 45566666777777777777777777777777777666654423346667777778999999999999999999999999999887655 PP

>> Syntaxin  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       3.3     3e+03      43      82 ..     217     256 ..     184     261 .. 0.64
   2 ?   10.0   5.2   0.00055      0.49       9      81 ..     689     760 ..     682     778 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.3
    Syntaxin  43 lkkrmesdikeikkraesvkarLeaLdksnkenekksgeg 82 
                  ++++e++ +++k++a   ++r  + ++++ ++ ++sg+g
  KKY23602.1 217 QQQDLEKLFEKVKEEAPPKQERFTRAQQAAMAAAEESGKG 256
                 5677777777777777777777777777776666666554 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00055
    Syntaxin   9 eeikkeiekleeevkklkkqneesktstraksvklkkrmesdikeikkraesvkarLeaLdksnkenekksge 81 
                  +++++ +kl+ e+++l++qn ++++ ++++ +++k++ e++  + + + + +++++e+ +k+n++ +++ g+
  KKY23602.1 689 DDLRSSSTKLTAEISELQNQNAQLIEDHTRDVLQIKAK-ETQLVRARGENDVLRTEIETVRKENERLKREVGR 760
                 57889999*****************************9.8888888999999*************99988743 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   5.5     0.062        56      19      63 ..     674     719 ..     668     729 .. 0.81
   2 ?    9.5   0.6    0.0009       0.8      18      50 ..     729     761 ..     719     770 .. 0.75
   3 ?   -1.7   0.2       2.9   2.6e+03      35      45 ..     903     913 ..     892     917 .. 0.56

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.062
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XX.XXXXXXXXXXX CS
       DivIC  19 ykqlkqeiaalqaelaklkaeneeLeaevkdLks.dedyieerARs 63 
                 + +l+ e ++l++  + l+    +L+ae+++L++ +   ie   R+
  KKY23602.1 674 LEELRLEKERLTKLTDDLRSSSTKLTAEISELQNqNAQLIEDHTRD 719
                 678999999999*******************976666677777774 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0009
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC- CS
       DivIC  18 aykqlkqeiaalqaelaklkaeneeLeaevkdL 50 
                 ++ + + e + l  e++++++ene+L++ev +L
  KKY23602.1 729 QLVRARGENDVLRTEIETVRKENERLKREVGRL 761
                 566667788888899999999999999998887 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.9
                 HHHHHHHHHHH CS
       DivIC  35 klkaeneeLea 45 
                 +lka++e+++a
  KKY23602.1 903 QLKARIEQMKA 913
                 44444444444 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   3.7     0.058        52       5      43 ..     680     718 ..     676     730 .. 0.77
   2 ?    4.7   0.3     0.039        35       3      41 ..     727     765 ..     725     785 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.058
       Spc24   5 ekfriakelsdleselesleselaelkeeleeleeesee 43 
                 ek r++k  +dl s+ ++l++e +el+++ ++l e   +
  KKY23602.1 680 EKERLTKLTDDLRSSSTKLTAEISELQNQNAQLIEDHTR 718
                 677889999999999999999999999999998776655 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.039
       Spc24   3 dnekfriakelsdleselesleselaelkeeleeleees 41 
                 +++++r+  e++ l +e+e +++e ++lk+e+  l +es
  KKY23602.1 727 ETQLVRARGENDVLRTEIETVRKENERLKREVGRLGRES 765
                 6889999999999****************9998887765 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   3.8      0.17   1.5e+02      26      63 ..     672     709 ..     670     715 .. 0.76
   2 ?    7.9   0.1    0.0036       3.2      40      63 ..     735     758 ..     723     759 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  26 aeieeLerrvkaLekeNksLkseleelkkevekLkskv 63 
                 ae eeL  + + L+k   +L+s   +l+ e+++L++++
  KKY23602.1 672 AELEELRLEKERLTKLTDDLRSSSTKLTAEISELQNQN 709
                 67778888888888888888888888888888887766 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0036
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  40 keNksLkseleelkkevekLkskv 63 
                 +eN  L+ e+e+ +ke+e Lk +v
  KKY23602.1 735 GENDVLRTEIETVRKENERLKREV 758
                 79******************9886 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.9     0.008       7.2      17      53 ..     689     725 ..     687     729 .. 0.87
   2 ?    2.7   0.8      0.17   1.6e+02      13      37 ..     734     758 ..     730     766 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.008
       TSC22  17 evLkekIkeLeernseleeENslLkalaspeqleqls 53 
                 + L++  + L++++sel+++N++L +  + ++l+   
  KKY23602.1 689 DDLRSSSTKLTAEISELQNQNAQLIEDHTRDVLQIKA 725
                 67999999*****************999999998755 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.17
       TSC22  13 rEeVevLkekIkeLeernseleeEN 37 
                 r e +vL+++I    ++n++l++E 
  KKY23602.1 734 RGENDVLRTEIETVRKENERLKREV 758
                 6678999999999999999999985 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   6.6      0.23   2.1e+02       4      64 ..     682     756 ..     672     787 .. 0.61

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHH............HHHHHHHHXXXXXXXXXXXX CS
        YabA   4 kelfdkleeleeqleelleeleelkeelaelleenae..Lele............neklrerleeeekkekekkk 64 
                 + l++  ++l ++ ++l++e++el+++ a+l+e++++  L++             n+ lr+++e+ +k++++ k+
  KKY23602.1 682 ERLTKLTDDLRSSSTKLTAEISELQNQNAQLIEDHTRdvLQIKaketqlvrargeNDVLRTEIETVRKENERLKR 756
                 555566666666666666666666666666666665422444455555555555555555555444444333333 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  10.1     0.017        15      21     123 ..     674     778 ..     662     786 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.017
       Atg14  21 perlyelrerlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrer..lqelkdklsqlkkeieekkkklakl.sdklkkRrs 116
                  e l  ++erl+kl  +  s  +k+++++++ + +++++  ++++++ l+ + +++++ r+r  +  l++ +++ +ke+e  k+++ +l +++l + r+
  KKY23602.1 674 LEELRLEKERLTKLTDDLRSSSTKLTAEISELQ-NQNAQLIEDHTRDVLQIKAKETQLVRARgeNDVLRTEIETVRKENERLKREVGRLgRESLGRERE 771
                 567888999999999999999999999999888.333333334444455555555555555444999******************99975677887777 PP

       Atg14 117 dleslqn 123
                 +l ++q+
  KKY23602.1 772 SLLATQE 778
                 7766665 PP

>> TEX13  Testis-expressed sequence 13 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1         1   9.2e+02      47     108 ..     336     396 ..     323     406 .. 0.65
   2 ?    7.5   4.3    0.0033         3      81     146 ..     679     744 ..     664     748 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1
       TEX13  47 railedsevpseakeacawsaLaLgvr..vaarqrelqarrvqkLqdqveehksaaqaLaselk 108
                  + ++d +++  +  a     LaLg+r  +a+ ++   +  +++L++   +++s+a aL + l 
  KKY23602.1 336 AKSMKDANITVVIAAANCTEKLALGLRrsFAKYRSTIMSPMMERLKE---KKQSVADALSAALD 396
                 55678888888899999999999999832333333334444444443...45566777766665 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0033
       TEX13  81 lqarrvqkLqdqveehksaaqaLaselkrlreqqemerkeaasqlqlaqaalaevqkerdlLrkkl 146
                 l+++r+ kL d ++   +  +a +sel++ ++q   ++   + q++ ++++l +++ e d+Lr+++
  KKY23602.1 679 LEKERLTKLTDDLRSSSTKLTAEISELQNQNAQLIEDHTRDVLQIKAKETQLVRARGENDVLRTEI 744
                 678899999999999999999999999999998888999999*********************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (921 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1155  (0.0644208); expected 358.6 (0.02)
Passed bias filter:                      698  (0.0389313); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.01u 0.35s 00:00:01.36 Elapsed: 00:00:00.52
# Mc/sec: 5290.99
//
Query:       KKY23603.1  [L=449]
Description: putative nuclear migration protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-48  159.8  25.4    9.3e-08   32.6   0.7    9.1  8  WD40           WD domain, G-beta repeat
    2.3e-13   50.2   0.3    0.00046   20.4   0.1    5.3  5  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    1.8e-07   30.2   0.0    0.00041   19.1   0.0    3.7  4  Nup160         Nucleoporin Nup120/160
    6.2e-05   21.9   0.0       0.31    9.7   0.0    2.7  3  Nucleoporin_N  Nup133 N terminal like
  ------ inclusion threshold ------
       0.15   12.1   0.1       0.31   11.2   0.1    1.4  1  bZIP_1         bZIP transcription factor
       0.28   11.3   0.1       0.52   10.4   0.1    1.4  1  bZIP_2         Basic region leucine zipper


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1   3.1e-09   9.2e-06       5      38 .]      92     126 ..      90     126 .. 0.93
   2 !   22.5   0.0   4.9e-08   0.00015       2      38 .]     131     170 ..     130     170 .. 0.88
   3 !   26.9   0.0   1.9e-09   5.8e-06       2      38 .]     176     221 ..     175     221 .. 0.89
   4 !   23.7   0.3   2.1e-08   6.2e-05       2      38 .]     226     263 ..     225     263 .. 0.94
   5 !   28.4   0.1   6.5e-10     2e-06       2      38 .]     268     326 ..     267     326 .. 0.81
   6 !   32.6   0.7   3.1e-11   9.3e-08       2      38 .]     330     367 ..     329     367 .. 0.94
   7 !    5.8   0.1    0.0093        28       2      23 ..     373     396 ..     372     408 .. 0.76
   8 ?    4.0   0.1     0.035   1.1e+02      12      36 ..     429     446 ..     420     447 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 3.1e-09
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++l  H  +vt++af+p  + lasGs+D t++iWd
  KKY23603.1  92 HVLQSHrLPVTAVAFHPVFSSLASGSEDTTIKIWD 126
                 788999888*************************9 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 4.9e-08
                 EEEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 
                 ++ rt +GH ++v +++   ++ +++las+s D t+++Wd
  KKY23603.1 131 ELERTVKGHtKPVLDVDfgGPRGSTLLASCSSDLTIKLWD 170
                 67799****999****9977777788999988*******9 PP

  == domain 3  score: 26.9 bits;  conditional E-value: 1.9e-09
                 EEEEEEESS.SSEEEEEEETTSSE........EEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgaw........lasGsdDgtvriWd 38 
                 +++rtl GH  s++s++f p+ga         l+s+s+D+t+riWd
  KKY23603.1 176 KNIRTLPGHdHSISSIRFIPSGAAgaplsgnlLVSASRDKTLRIWD 221
                 789******555*****9999999999999988999*********9 PP

  == domain 4  score: 23.7 bits;  conditional E-value: 2.1e-08
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  c++t++GH ++v+++  s dg+wl+s++ D+  r+Wd
  KKY23603.1 226 YCVKTIKGHtDWVRAVIPSLDGRWLFSAGNDQIPRLWD 263
                 69*******777**************9999*******9 PP

  == domain 5  score: 28.4 bits;  conditional E-value: 6.5e-10
                 EEEEEEESSSS.EEEEEEETTSSE.....................EEEEETTSEEEEEE CS
        WD40   2 qclrtltGHss.vtslafspdgaw.....................lasGsdDgtvriWd 38 
                 ++ +t+ GH + + ++af p +++                     la+Gs+D+t++iWd
  KKY23603.1 268 ELKTTFLGHEHvIECVAFAPGSSYvhlasiagykkppspssagefLATGSRDKTIKIWD 326
                 5667899**8866****8888888777777777777777777777999**********9 PP

  == domain 6  score: 32.6 bits;  conditional E-value: 3.1e-11
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + ++tl GH +++++l f+p g++l+s sdD+t+r Wd
  KKY23603.1 330 TIVKTLVGHdNWIRGLVFHPAGRYLVSVSDDKTIRCWD 367
                 56899****999**************99*********9 PP

  == domain 7  score: 5.8 bits;  conditional E-value: 0.0093
                 EEEEEEE...SSSSEEEEEEETTSS CS
        WD40   2 qclrtlt...GHssvtslafspdga 23 
                 +c+++ +   GH +v+++++ pd+ 
  KKY23603.1 373 KCVKVVDdshGH-FVSCIRWAPDQI 396
                 577776543377.8****9999975 PP

  == domain 8  score: 4.0 bits;  conditional E-value: 0.035
                 S.EEEEEEETTSSEEEEEETTSEEEE CS
        WD40  12 s.vtslafspdgawlasGsdDgtvri 36 
                 + +++l        +a+Gs D  vri
  KKY23603.1 429 GkIRCL--------IATGSVDLGVRI 446
                 2499**........*******88888 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00045       1.3      37      81 ..      97     141 ..      92     150 .. 0.86
   2 ?   -1.2   0.0      0.89   2.7e+03      51      89 ..     155     193 ..     139     196 .. 0.71
   3 !    8.6   0.0   0.00074       2.2      49      81 ..     204     236 ..     182     242 .. 0.91
   4 ?    4.7   0.0     0.013        38      44      89 ..     241     285 ..     234     287 .. 0.85
   5 !   20.4   0.1   1.5e-07   0.00046      11      90 ..     314     392 ..     307     394 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00045
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +   v+++a++p  + La + +d+++++ d e g++ ++++ +++
   KKY23603.1  97 HRLPVTAVAFHPVFSSLASGSEDTTIKIWDWELGELERTVKGHTK 141
                  56789*****************************99988887766 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.89
  ANAPC4_WD40  51 klLavaysdgevrlldaesg.kvvhslsvksekavtclgW 89 
                  +lLa   sd +++l d +++ k +++l+ +++ +++++ +
   KKY23603.1 155 TLLASCSSDLTIKLWDPSDEyKNIRTLPGHDH-SISSIRF 193
                  46677777889999996543267777777766.4777765 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00074
  ANAPC4_WD40  49 dgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +g+lL+ a  d ++r+ d+ +g +v++++ +++
   KKY23603.1 204 SGNLLVSASRDKTLRIWDVTTGYCVKTIKGHTD 236
                  699***********************9987765 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.013
  ANAPC4_WD40  44 LaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  +  + dg+ L  a +d   rl da sg++  ++  +++  + c+ +
   KKY23603.1 241 VIPSLDGRWLFSAGNDQIPRLWDATSGELKTTFLGHEH-VIECVAF 285
                  555679***********************999977777.6999877 PP

  == domain 5  score: 20.4 bits;  conditional E-value: 1.5e-07
  ANAPC4_WD40  11 AlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrllda.esgkvvhslsvksekavtclgWg 90 
                  A ++ d+ + +    g  v tl   ++d+ +r+L ++p g+ L+ + +d ++r  d  +++k+v+ ++ ++ + v+c+ W+
   KKY23603.1 314 ATGSRDKTIKIWDNRGTIVKTL--VGHDNWIRGLVFHPAGRYLVSVSDDKTIRCWDLsQEAKCVKVVDDSHGHFVSCIRWA 392
                  5555555555555555555555..7899****************************625789********999*******7 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.11   3.3e+02     219     246 ..     144     170 ..     131     175 .. 0.82
   2 !   19.1   0.0   1.4e-07   0.00041     231     257 ..     206     232 ..     188     244 .. 0.90
   3 ?    0.7   0.0     0.052   1.6e+02     231     246 ..     311     326 ..     305     333 .. 0.87
   4 !    4.2   0.0    0.0046        14     231     253 ..     352     375 ..     346     389 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.11
                 EEEET.....TTTEEEEEETT-EEEEEE CS
      Nup160 219 ldvavavveigqtylfalsrdgkLrvWn 246
                 ldv ++  + g+t+l++ s+d ++++W+
  KKY23603.1 144 LDVDFGGPR-GSTLLASCSSDLTIKLWD 170
                 666666677.9****************9 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 1.4e-07
                 TEEEEEETT-EEEEEETTTTEEEEEEE CS
      Nup160 231 tylfalsrdgkLrvWnlltgkclatid 257
                 ++l+++srd++Lr+W+++tg c+ ti 
  KKY23603.1 206 NLLVSASRDKTLRIWDVTTGYCVKTIK 232
                 7899********************985 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.052
                 TEEEEEETT-EEEEEE CS
      Nup160 231 tylfalsrdgkLrvWn 246
                  +l++ srd+++++W+
  KKY23603.1 311 EFLATGSRDKTIKIWD 326
                 689999*********9 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.0046
                 TEEEEEETT-EEEEEETTT.TEEE CS
      Nup160 231 tylfalsrdgkLrvWnllt.gkcl 253
                  yl+++s d+++r W+l+  +kc+
  KKY23603.1 352 RYLVSVSDDKTIRCWDLSQeAKCV 375
                 599**************8514555 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.51   1.5e+03     196     231 ..      95     128 ..      73     142 .. 0.77
   2 !    9.7   0.0    0.0001      0.31     213     257 ..     197     245 ..     151     299 .. 0.81
   3 !    9.5   0.0   0.00013      0.38     204     237 ..     342     374 ..     302     382 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.51
                    G----GG-EEEEEEECCTCEEEEEETTSEEEEEEEE CS
  Nucleoporin_N 196 sgasereeivqlridssrrilytlsskgvirvydls 231
                    +  s r ++++++ ++    l + s++ +i+++d +
     KKY23603.1  95 Q--SHRLPVTAVAFHPVFSSLASGSEDTTIKIWDWE 128
                    4..677788888888989999999999999999965 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0001
                    T........CEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHHHHHH.HHSC CS
  Nucleoporin_N 213 r........rilytlsskgvirvydlsasngesslksdidirqilleaitesl 257
                             ++l+++s+++++r++d+++ +  +++k+++d+ ++++ +    l
     KKY23603.1 197 GaagaplsgNLLVSASRDKTLRIWDVTTGYCVKTIKGHTDWVRAVIPS----L 245
                    3444666679*****************888899999999999988866....3 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00013
                    EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE- CS
  Nucleoporin_N 204 ivqlridssrrilytlsskgvirvydlsasnges 237
                    i  l+ ++  r l+++s +++ir++dls+++ ++
     KKY23603.1 342 IRGLVFHPAGRYLVSVSDDKTIRCWDLSQEA-KC 374
                    6667777777******************544.34 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1    0.0001      0.31      23      53 ..      41      71 ..      40      79 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 23 RKqaeieeLerrvkaLekeNksLkseleelk 53
                +K  ++ +L+++   Le++N++L+ e+++ +
  KKY23603.1 41 KKWTSVVRLQKKIMDLEAKNTALQHEIDTAT 71
                788999*********************9866 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00017      0.52      30      50 ..      49      69 ..      39      71 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00017
                HHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 30 leervkeLeeeNaqLrqkveq 50
                l++++++Le++N +L+ ++++
  KKY23603.1 49 LQKKIMDLEAKNTALQHEIDT 69
                89***************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3039.79
//
Query:       KKY23604.1  [L=201]
Description: putative 40s ribosomal protein s8 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-55  185.0   1.3    7.7e-55  184.8   1.3    1.0  1  Ribosomal_S8e  Ribosomal protein S8e


Domain annotation for each model (and alignments):
>> Ribosomal_S8e  Ribosomal protein S8e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.8   1.3   4.3e-59   7.7e-55       1     137 []       1     187 [.       1     187 [. 1.00

  Alignments for each domain:
  == domain 1  score: 184.8 bits;  conditional E-value: 4.3e-59
                    XXXBXXCCCSEESSTEEXXXSSXXXCCSBXXXXXXXEESSHEEEEEEETTCEEEEEEESESEEEEEETTTTEEEEEEEEEEECSSSTCHHHHTTC- CS
  Ribosomal_S8e   1 mgisrdskhkrkltGgkakllrkkrkielgrkekatklgaervkvvrvrgGkrkkralrlkkanvthpeekvtkklkIlgVkknpsnneyvrlgvl 96 
                    mgisrds+hkr++tG+k++++rkkr++e+gr++++t++ga+r++ vr+rgG++k+r+lrl+ +n+++++e++++k++++ V ++psnne+vr+++l
     KKY23604.1   1 MGISRDSRHKRSATGAKRAHYRKKRAFEKGRQPANTRIGAKRIHLVRTRGGNQKYRGLRLEAGNFSWGSEGISRKTRVIVVSYHPSNNELVRTNTL 96 
                    99********************************************************************************************** PP

                    -TTEEEEEESHH..................................................HHHHHHTTEEEEEEESEHHHHSSEEEEEE CS
  Ribosomal_S8e  97 tKgaiievdvse..................................................LgevtqsgkvvAqvtsrPgqdGcvnavlL 137
                    tK+a++++d+++                                                  L+ ++++g+++A+v+srPgq+G+v++++L
     KKY23604.1  97 TKSAVVQIDAAPfrqwfeahygtgigrrrqgkseaaeeapksksvvkkqeervkaagkvepaLERQFEAGRLYAVVSSRPGQSGRVDGYIL 187
                    ******************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1314.47
//
Query:       KKY23605.1  [L=877]
Description: putative nitrate reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-59  200.3   0.2    2.3e-59  199.4   0.2    1.5  1  Mo-co_dimer     Mo-co oxidoreductase dimerisation domain
    4.1e-55  186.0   0.0    7.4e-55  185.2   0.0    1.4  1  Oxidored_molyb  Oxidoreductase molybdopterin binding domain
    1.5e-34  118.3   0.0    2.4e-34  117.6   0.0    1.4  1  FAD_binding_6   Oxidoreductase FAD-binding domain
    2.5e-28   98.9   0.0    5.1e-28   97.9   0.0    1.5  1  NAD_binding_1   Oxidoreductase NAD-binding domain
      3e-21   75.3   0.0      1e-20   73.7   0.0    1.9  2  Cyt-b5          Cytochrome b5-like Heme/Steroid binding domai
     0.0018   18.4   0.0      0.011   15.8   0.0    2.1  2  NAD_binding_6   Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> Mo-co_dimer  Mo-co oxidoreductase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.4   0.2   7.6e-63   2.3e-59       1     136 [.     314     458 ..     314     460 .. 0.98

  Alignments for each domain:
  == domain 1  score: 199.4 bits;  conditional E-value: 7.6e-63
                  S----S---EEEE-SS-SEEEE-S....EEEEEEEEEE-STT--EEEEEEESSTTSS-EE-EEESSSSS---..SS.........TTS-TTS-EEEEE CS
  Mo-co_dimer   1 ryaiydlnvnsvicspeheekvklkeaeetytikGyaysGgGrritrvevsldkGksWklaeieyeedkereakee.........sretafcwvfwel 89 
                  ryaiydl++ns+i++p+hee++ l+   ety+ +Gyay+GgGrri rvev+ldkG++W la+iey+ed++re ++          +re++fcw+fw++
   KKY23605.1 314 RYAIYDLSTNSAIAHPAHEEQLCLRGGPETYRARGYAYGGGGRRISRVEVTLDKGRNWILADIEYPEDRYREYERDlfggkvdmwWRESCFCWCFWSI 411
                  79*********************************************************************9887789******************** PP

                  EEEESS...E.EEEEEEEETT--B--SHHH--TT-------EEEEEE CS
  Mo-co_dimer  90 dvevselakekeilvravDealnvqPeemiwnvlgmlnnawfrvkik 136
                  +++v++la++k+i+vra+De++nvqP++m+w+vlgm+nn+wfrv+i 
   KKY23605.1 412 ELSVADLANAKDIMVRAMDESMNVQPRDMYWSVLGMMNNPWFRVTIG 458
                  ********************************************996 PP

>> Oxidored_molyb  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.2   0.0   2.5e-58   7.4e-55       1     171 [.     110     285 ..     110     286 .. 0.93

  Alignments for each domain:
  == domain 1  score: 185.2 bits;  conditional E-value: 2.5e-58
                     SS----....GCCC-EEEEESTCSSEEEEEHHHHHH.C-EEEEEEEEE-TTTTHHHHCHH.--SS----TTSEEEEEEEEEEHHHHHHHTTB-ET CS
  Oxidored_molyb   1 hgavpkv...dpekwrlevdglvekplslslddLka.lpavevtatlqCagnrrkelnkk.kvkglqwgagavsnaeWtGvrlrdvLekagvkkp 90 
                     hgavp+v   d+ +w+++v+glve+p++++l+dL + +++ + ++tl Cagnrrke+n++ k+kg++wga+ vs+a WtGv +++v+++a++k +
      KKY23605.1 110 HGAVPEVrdeDIPNWEFSVEGLVEHPITMTLSDLIRdYEQITCPITLVCAGNRRKEQNQVrKSKGFSWGAAGVSTALWTGVAMAEVIKRAKPK-R 203
                     7889955322566*********************888*********************777*******************************7.9 PP

                     T..EEEEEEEEE-TCCTEEEEEEEHHHHC..TTT-EEEEEETTEE--CCCTTT-EEE-TTB-GGGSBTTEEEEEEESS---SH CS
  Oxidored_molyb  91 earhvvfegadeeleeskygasiplekal..eddvlLAyemngepLppdhGyPlRlvvpglvgarsvKwlkrievsdeesegy 171
                     +ar+v++egad+ + +++yg++ +l+++l  ++ ++LAy+mnge L+pdhG PlR+v+pg++g+rsvKwl+++ +++ +s++ 
      KKY23605.1 204 KARYVCMEGADKLP-NGYYGTCAKLNWVLdpNRGMMLAYKMNGEMLSPDHGKPLRAVIPGQIGGRSVKWLRKLIITEGPSDNW 285
                     ***********877.**************54448*********************************************9986 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.0   8.2e-38   2.4e-34       2      99 .]     630     735 ..     629     735 .. 0.98

  Alignments for each domain:
  == domain 1  score: 117.6 bits;  conditional E-value: 8.2e-38
                    EEEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEEC..ETTCCEEEEEE.BSSTTECCEEEEEEE--......TT-HHHHHHHCS-TT-EEE CS
  FAD_binding_6   2 lkltekeevsedtrifrfklpsekqklglpvGqhvflrlk..ikgeaviRsYtpissenekGelellvkvy......pgGkmsqaLdelkigdtle 89 
                    ++l++k+ vs+dtrif+ +l++++qklglpvGqh+++rl+  +++ea+iRsYtpis+ ++kG+l++lvk+y      +gGkmsqa+d l++g+ +e
     KKY23605.1 630 AVLSSKKIVSWDTRIFTYDLEHKEQKLGLPVGQHLMVRLRdpVTREAIIRSYTPISEISDKGKLDMLVKIYfdktgqQGGKMSQAMDALPVGHFVE 725
                    689*************************************99****************************************************** PP

                    EEEEE-SEEC CS
  FAD_binding_6  90 ikGPlGkfeY 99 
                    +kGP+GkfeY
     KKY23605.1 726 FKGPIGKFEY 735
                    *********9 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   1.7e-31   5.1e-28       1     108 [.     755     861 ..     755     862 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 1.7e-31
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleellslkkeethvy 96 
                    mi+gG+Gi+P+++v rai+++++d tk++++ Gnr  ed+l++ el++l +++ +r ++++++++ +++w+g +gr++ +l++e+++ + ++++v+
     KKY23605.1 755 MICGGSGITPIYQVFRAIMQNPQDGTKCTVFDGNRLFEDILCKTELDALVQENGHRAQLLYTLTQGPDDWSGLRGRITGKLIKEHCG-PHPDHMVL 849
                    9**************************************************************************************.9******* PP

                    EECSHHHHHHHH CS
  NAD_binding_1  97 vCGppgMikavr 108
                    +CGp++++ka++
     KKY23605.1 850 ICGPEALEKAMH 861
                    ********9875 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.8   5.4e+03      12      33 ..     307     329 ..     301     344 .. 0.66
   2 !   73.7   0.0   3.4e-24     1e-20       2      73 ..     528     597 ..     527     598 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.8
                 TEEEEEETTEEEECTTTC.CCST CS
      Cyt-b5  12 ndlwvairgkVYDvskfl.skhp 33 
                 ++ w+  r  +YD+s      hp
  KKY23605.1 307 DKWWTDERYAIYDLSTNSaIAHP 329
                 45666667789**9954336777 PP

  == domain 2  score: 73.7 bits;  conditional E-value: 3.4e-24
                 HHHHTTTECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHGGEEEEE CS
      Cyt-b5   2 leelskhngkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkkylvGkl 73 
                  +el+kh++ ++ w++++g+VYD +kfl  hpGg+++i ++aG Dat++f ++ hse+ a+ ++ +y++G+l
  KKY23605.1 528 IDELRKHDKAEEPWFVVKGEVYDGTKFLAGHPGGAQSIISAAGLDATDEFMAI-HSET-AKAMMPEYHIGTL 597
                 68***************************************************.9999.8**********98 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.8e-06     0.011       4      29 ..     753     782 ..     750     840 .. 0.76
   2 ?   -0.3   0.0      0.34     1e+03     138     151 ..     847     860 ..     834     863 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.8e-06
                    xxxxxxxxxxxxxxxxxxxxxxxxx....x RF
  NAD_binding_6   4 vllvagGiGitpfisilkdllkksk....k 29 
                     ++++gG+Gitp++ +++ ++++ +     
     KKY23605.1 753 FIMICGGSGITPIYQVFRAIMQNPQdgtkC 782
                    579*******************99844440 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.34
                    xxxxxxxxxxxxxx RF
  NAD_binding_6 138 gvfvCGppklvkev 151
                     v++CGp++l k +
     KKY23605.1 847 MVLICGPEALEKAM 860
                    699*******9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (877 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.54
# Mc/sec: 4918.62
//
Query:       KKY23606.1  [L=1073]
Description: putative nitrite reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-42  144.7   0.4    5.1e-42  144.1   0.4    1.2  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    5.3e-21   74.8   0.0      1e-20   73.9   0.0    1.4  1  NIR_SIR        Nitrite and sulphite reductase 4Fe-4S domain
    3.6e-16   59.5   2.1    1.7e-15   57.3   1.3    2.4  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    3.3e-14   53.0   4.2    2.4e-10   40.6   4.0    2.6  2  Fer2_BFD       BFD-like [2Fe-2S] binding domain
    7.4e-10   38.7   0.0     0.0006   19.7   0.0    3.0  3  Rieske_2       Rieske-like [2Fe-2S] domain
      2e-09   37.3   0.1    1.9e-08   34.1   0.0    2.7  2  Rieske         Rieske [2Fe-2S] domain
    1.8e-08   34.1   0.0    3.5e-08   33.2   0.0    1.5  1  NIR_SIR_ferr   Nitrite/Sulfite reductase ferredoxin-like half
    1.4e-05   24.5   0.0    3.5e-05   23.2   0.0    1.5  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    0.00016   21.5   0.0        0.4   10.6   0.0    3.0  2  Rubredoxin_C   Rubredoxin NAD+ reductase C-terminal domain
     0.0061   16.6   0.1       0.38   10.7   0.0    2.4  2  NAD_binding_9  FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.096   12.4   0.0       0.29   10.9   0.0    1.7  2  Pex19          Pex19 protein family
       0.18   10.8   0.3        1.3    8.0   0.0    2.3  3  FAD_binding_2  FAD binding domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.1   0.4   3.4e-45   5.1e-42      17     278 ..       4     272 ..       2     289 .. 0.89

  Alignments for each domain:
  == domain 1  score: 144.1 bits;  conditional E-value: 3.4e-45
                  HHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH..HHHHCHHHH.CCCCHCCTCEEEEESCEEEEETEEECTCEEEEEESEEEE---EEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  17 ltlaqagakvtlvelegtclnggcllskallgvaedaeias..evvkklnqg.ielllgeevvkidpgkkkvklekkkegdeekiaydklvlAtGssp 111
                  l++++ +++v+++++e ++ ++++ l++ + + + +   +   e  +++ +g + + l++ v++i  ++ kv+l+     ++ ++ yd lvlAtGs++
   KKY23606.1   4 LDAKRREYDVVVIGEEPHLAYNRVGLTSFFQHREVKNLYLNqeEWYSNMPEGsLNYHLNTLVTEIKADE-KVVLT----AQGDTVIYDILVLATGSNA 96 
                  578899********************88887665555444499556667777689999977****8888.77774....34559************** PP

                  -BC.TCTTC.TTBEECCSECHHHHHHCCSS-T...SEEEEES-SHHHHHHHHHHHHHT-..EEEEEESSSSSS.TTS-HHHHHHHHHHHHHTTEEEEE CS
                  xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 112 rdl.gipGvaenvgklvrtldsaealklkllp...krivvvGgGyiGvElAaalaklgk..evtlveardrll.raldkelsaaleealekeGvevkl 202
                   ++ ++pG   +++++ rt+d+ e+l +  +       +vvGgG+ G+E A a+++l +  +v l+e++ ++l r+ld +++ ++ e +++ G +v+l
   KKY23606.1  97 LLPrHTPGHDAKGVFVYRTIDDLEKLISFSKTvkgTTGAVVGGGLLGLEAAKAMMDLEDfaKVKLIERNRWVLsRQLDGDAGSMVVELVRNLGLDVML 194
                  *********99999***********9887777555666***************999977668************************************ PP

                  SCEEEEEEETTE.EEE.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EE.EETTEEE--TTSBESSTTEEE-GGGC CS
                  xxxxxxxxxxxx.xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 203 gtsvkeidgnge.kle.vvledgeeidadlvvvavGvrpstelleeklglel.derggivvdeflrtnvpgiyaiGDva 278
                   ++v +i+ +++ +++ vv edge++d+ ++++a+G+++++el+ +++g+++ d++ggivv+ +l+t+v++iyaiG +a
   KKY23606.1 195 SKRVGKIEVDESnHVKgVVFEDGERMDCTCIMFAIGIKARDELA-RQAGIKCaDRGGGIVVNNSLETSVKDIYAIGECA 272
                  ***********988889***************************.*******99999********************** PP

>> NIR_SIR  Nitrite and sulphite reductase 4Fe-4S domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.0   6.8e-24     1e-20       3     155 ..     658     798 ..     656     800 .. 0.95

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 6.8e-24
                 SSCCCCCCSTCCCTBSS-SS-THHHHHHHHHHHCTCCCCTSSSS-BEEEEESSTCSTSSGGGSSEEEEEEEETTCEEEEEEEE--B-SSSTC-TCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR   3 anlrnvtlcpgaglceeallDttelakaiedelepeygetylPrKfKiavsgcpnncvaveanDiglvgvkkdekeigfnilvGGglgrthgakktsar 101
                 ++lr+v++c+g+++c++ + D+  +a ++e    ++y+  + P+K K  vsgc + c++++ +D+gl+++ k     gfni+vGG+ g+t++  + +a 
  KKY23606.1 658 KSLRTVKSCVGTTWCRFGIGDSVGMAIRLE----ERYKSIRAPHKIKGGVSGCVRECAEAQNKDFGLIATDK-----GFNIFVGGNGGATPKHSELLA- 746
                 689**************************9....**************************************.....*********************. PP

                 EEEEEGGGHHHHHHHHHHHHHHHS-CSSGGG-SHHHHHHHH..HHHHHHHHH.HHCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx.xxxx RF
     NIR_SIR 102 lgfvpeeevlevveaivevyrdhgdrknrkkeRlkylverl..GvekFrekv.eeel 155
                    vp+++v+++++  + +y+    r++ + +R + ++e+l  G++ +re+v e +l
  KKY23606.1 747 -KDVPPDDVVSILDRYLMFYM----RTADRLQRTARWLEQLpgGIQYLREVVlEDRL 798
                 .79******************....**************988899999999966665 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.4   2.1e+03      56      77 ..      58      75 ..      47      80 .. 0.81
   2 !   57.3   1.3   1.2e-18   1.7e-15       3      81 .]     135     217 ..     133     218 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.4
                EEECSEEEEEEEEETTSEEEEE CS
   Pyr_redox 56 evllntkveeiegsedgvesvk 77
                + +lnt v+ei+ +e+    v+
  KKY23606.1 58 NYHLNTLVTEIKADEK----VV 75
                689*********9998....33 PP

  == domain 2  score: 57.3 bits;  conditional E-value: 1.2e-18
                 EEECSSHHHHHHHHHHHHTT..SEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTS.EEEEEEETS CS
   Pyr_redox   3 vvvGgGyiglElAgalaelg..kkVtvversdkll.rllDeeaskilqeklekngievllntkveeiegsedg.vesvklkdg 81 
                 +vvGgG++glE+A+a+ +l   +kV+++er+ ++l r+lD +a++++ e ++++g +v+l+++v +ie +e++ v++v+++dg
  KKY23606.1 135 AVVGGGLLGLEAAKAMMDLEdfAKVKLIERNRWVLsRQLDGDAGSMVVELVRNLGLDVMLSKRVGKIEVDESNhVKGVVFEDG 217
                 8*******************777********************************************************9975 PP

>> Fer2_BFD  BFD-like [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   4.0   1.6e-13   2.4e-10       2      49 ..     445     492 ..     444     494 .. 0.95
   2 !   10.0   0.0   0.00058      0.87       3      50 ..     508     558 ..     506     559 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 1.6e-13
    Fer2_BFD   2 VCrCegvtegeIrdairrag.lttveevkrrtkagtgCggCrpaieeiL 49 
                 +C+C++v++g ++  + ++g  +++ +vk  tkagtgCggC+p ++ i+
  KKY23606.1 445 ICSCHNVSKGNLVTKV-KDGtCKSLGDVKSCTKAGTGCGGCVPLVQSIF 492
                 9***************.8888*************************997 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00058
    Fer2_BFD   3 CrCegvtegeIrdairraglttveevkrrtkagt...gCggCrpaieeiLa 50 
                 C  ++ ++ ++ + i  ++l ++++v+++ +  +   gC  C+pai+ iLa
  KKY23606.1 508 CPHFSYSRADLYNIIYVKKLNDFRQVMNEAGKDNdslGCEVCKPAIASILA 558
                 55567788888888877779999999977766543337************8 PP

>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.4     5e+03       9      46 ..     235     275 ..     231     283 .. 0.61
   2 !   16.3   0.0   4.6e-06    0.0069       1      59 [.     878     938 ..     878     943 .. 0.85
   3 !   19.7   0.0     4e-07    0.0006      44     101 ..     940    1002 ..     935    1005 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.4
                 CCS-TTB-EEEEETTEEEEEEE-...TTS-EEEEESS-TTT CS
    Rieske_2   9 edlvketgvaalvdgkqvalfrl...ekeevyAidnldpas 46 
                 ++l+++ g+     g  +++      + +++yAi++    +
  KKY23606.1 235 DELARQAGIKCADRGGGIVVNNSletSVKDIYAIGECASWE 275
                 66777777444444444444443344667999999876664 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 4.6e-06
                 SEEEEEECCCS-TTB-.EEEEE..TTEEEEEEE-TTS-EEEEESS-TTTSSSTCCCSEEEEC CS
    Rieske_2   1 ewvpvckledlvketg.vaalv..dgkqvalfrlekeevyAidnldpaseanvlsrGlvgdk 59 
                 +w+p+++ + +v++ + + + v  +++q a+ r+ +++ yA ++++p ++a +ls+Gl+g++
  KKY23606.1 878 TWQPMIEESRFVEGPSgASQNVkrGDTQLAIYRI-RGKYYASQQMCPHKRAFALSDGLLGET 938
                 5999999999988754344444459*********.9**********************9975 PP

  == domain 3  score: 19.7 bits;  conditional E-value: 4e-07
                  TTTSSSTCCCSEE.EECTTCEEEE-TTT--EEETTT...-BBSS-TTSB-BEE-EEES.TSEE CS
    Rieske_2   44 paseanvlsrGlv.gdkkgelvvasPlykqkfdLkt...Gecledeevslkvypvrve.dgkv 101 
                  p s++++ s     +dk+ +l++ +P +k +f+L+t   G c +d++ s++++p+  + dg +
  KKY23606.1  940 PSSSSSPASTTTTcKDKESQLFISCPFHKRNFQLNTsesGTCTNDTSLSIATFPAEARdDGMI 1002
                  666666666665515568899*************876669****************9955555 PP

>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.6   2.3e+03      57      68 ..     440     451 ..     428     467 .. 0.77
   2 !   34.1   0.0   1.3e-11   1.9e-08       2      79 ..     879     984 ..     878     993 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.6
                 TT.EEE-TTT-- CS
      Rieske  57 ekgvleCpcHgw 68 
                 ++ + +C+cH+ 
  KKY23606.1 440 DDDTQICSCHNV 451
                 344889****86 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 1.3e-11
                 EEEEEEGGGC-...TTCEEEEEETTEEEEEEE-TTS-EEEEESC-TTTT-BC.......................GGSEEETT.EEE-TTT--EEE... CS
      Rieske   2 wvavakesdvp...egdpltvkvggeplvvlrdedgevyAlsdvCtHrgapl.......................segkidekgvleCpcHgwayd... 71 
                 w+++ +es +    +g +++vk+g+++l+++r  +g++yA +++C+H++a+                        +++k  ++  ++Cp+H+ +++   
  KKY23606.1 879 WQPMIEESRFVegpSGASQNVKRGDTQLAIYR-IRGKYYASQQMCPHKRAFAlsdgllgetlpssssspasttttCKDKE-SQLFISCPFHKRNFQlnt 975
                 777777777774546669**************.6****************955888889999999988886654322222.66789*********9877 PP

                 .TTSBEEE- CS
      Rieske  72 .adGkvikg 79 
                  ++G +++ 
  KKY23606.1 976 sESGTCTND 984
                 777777765 PP

>> NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   2.3e-11   3.5e-08       3      67 ..     585     646 ..     583     648 .. 0.94

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 2.3e-11
  NIR_SIR_ferr   3 qkdgkgyymvrlrvpnGritaeqlraladiaekygsgeirlTtrQnlqlhgvpeedleeileeLa 67 
                   q++g+  ++v  rv +G it++ l  +  +a+ky   + ++T  Q +  +g ++ dl +i+ eL 
    KKY23606.1 585 QRNGT--FSVIPRVAGGEITPDKLITIGSVAKKYN-LYCKITGGQRIDMFGAKKQDLINIWTELI 646
                   88876..6***************************.*************************9996 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.4e-08   3.5e-05      95     305 .]      56     269 ..      45     269 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.4e-08
  Pyr_redox_3  95 elpiklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeek.lvkhyskvkefhk.......yagqkvvViGgknSavDaAlelv 184
                   l+ +l++ V+++k + e+ +++++ +t+  + +++AtG        + pG +   v +y+++++++k       ++g+  +V+Gg+  + +aA  ++
   KKY23606.1  56 SLNYHLNTLVTEIKAD-EKVVLTAQGDTVIYDILVLATGSNAL-LPRHTPGHDAkGVFVYRTIDDLEKlisfsktVKGTTGAVVGGGLLGLEAAKAMM 151
                  6888999999999865.57788888899999********9443.33367888852577999988775422222226788899************9999 PP

  Pyr_redox_3 185 rk..gaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeey..kvktedgkkvevkddvvlatGykpdlsflkksl 278
                  +    a+V+++ r+     +    s +l  d  + + elv++  ++v+  ++v +i+ +e+++   v +edg++++  + +++a+G k   ++ ++++
   KKY23606.1 152 DLedFAKVKLIERNR----W--VLSRQLDGDAGSMVVELVRNLGLDVMLSKRVGKIEVDESNHvkGVVFEDGERMDC-TCIMFAIGIKARDELARQAG 242
                  883358999999996....3..36778***************66**********99976554312466****99876.566899************** PP

  Pyr_redox_3 279 feldedgrpvlteeteetnvpglflaG 305
                  ++ ++ g   + ++  et v++++ +G
   KKY23606.1 243 IKCADRGGGIVVNNSLETSVKDIYAIG 269
                  ***999999999999*********999 PP

>> Rubredoxin_C  Rubredoxin NAD+ reductase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0028       4.2       2      22 ..     313     333 ..     313     345 .. 0.88
   2 !   10.6   0.0   0.00027       0.4      24      69 ..     367     414 ..     359     415 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0028
                   --EEEETTEEEEEES--TT-- CS
  Rubredoxin_C   2 vtiLkvsgidlfSvGdieeee 22 
                   +t+Lk +g+++ S+Gd+ ++ 
    KKY23606.1 313 STKLKLLGVEVASFGDFFADR 333
                   699*************98775 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00027
                   SEEEEEE-SS-..EEE..EEEETTEEEEEEEES-HHHHHHHHHHHHTT CS
  Rubredoxin_C  24 aeelveedkekgkYkk..lfikngklvGAiliGDtkesaklkkliekk 69 
                   +++l+++d  +  Ykk   +++ + l G  +iGDtk++ kl  +++++
    KKY23606.1 367 VRALTYRDPFQAVYKKylFTLDGKYLLGGMMIGDTKDYVKLVPMVKNQ 414
                   6789999999******433567778**************999888886 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00026      0.38      98     155 ..      41      94 ..      29      95 .. 0.80
   2 ?    3.2   0.0     0.051        76       1      35 [.     135     166 ..     135     181 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00026
  NAD_binding_9  98 rYlrdlfeellarlpegvtvevhraevvdleeradgqavlladgaslaadaVvLAlGh 155
                     Yl++  ee+ +++peg    ++++ v++++ ++    vl+a+g+++ +d +vLA+G 
     KKY23606.1  41 LYLNQ--EEWYSNMPEGSLNYHLNTLVTEIKADE--KVVLTAQGDTVIYDILVLATGS 94 
                    55554..678889999987888899999999664..5799*****************6 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.051
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpse 35 
                    a+vG+G  Gl +++++++    ++  +++l++++ 
     KKY23606.1 135 AVVGGGLLGLEAAKAMMDL---EDFAKVKLIERNR 166
                    89*****************...5889999999875 PP

>> Pex19  Pex19 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00019      0.29     106     159 ..     527     582 ..     488     589 .. 0.68
   2 ?   -2.1   0.0       1.8   2.6e+03       8      53 ..     802     852 ..     800     872 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
       Pex19 106 LkqLeagadvegeggeeg...edlekmllgmmeqLssKevLyePlkelnekfpewLe 159
                 L+++++  +++g+++ ++   e  ++++ +++ +L +K v+  Pl  l++  + +L 
  KKY23606.1 527 LNDFRQVMNEAGKDN-DSlgcEVCKPAIASILASLYNKHVMSKPLHSLQDTNDRFLG 582
                 444433322222322.22578999************************998877775 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.8
       Pex19   8 kqlekemeelmkel.....keeeeeeaeedfeellkqleeaaeaaaeaksa 53 
                 ++lek+m++l ++      ++ ++ e +++f+++ ++ e+ + a ++ +++
  KKY23606.1 802 ADLEKQMQDLVGTFfcewtEAINDPERRKAFQQFGNTTETVEPAIEKVEER 852
                 567777777777778888755555666666776666666644444333333 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.49   7.3e+02       4      18 ..     136     150 ..     135     166 .. 0.80
   2 ?   -2.0   0.0      0.96   1.4e+03     148     181 ..     182     216 ..     176     230 .. 0.80
   3 ?    8.0   0.0   0.00086       1.3     374     404 ..     250     274 ..     227     280 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.49
                    EE--SHHHHHHHHHH CS
  FAD_binding_2   4 ViGsGlAGLaAAlea 18 
                    V+G+Gl GL AA ++
     KKY23606.1 136 VVGGGLLGLEAAKAM 150
                    9***********776 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.96
                    HHHHHTCTEEEEESEEEEEEEE.CTTEEEEEEEEE CS
  FAD_binding_2 148 vesarkagvdfqerteadeLiv.edgrvtGavven 181
                    ve +r++g+d++ + ++ ++ v e+++v G+v+e+
     KKY23606.1 182 VELVRNLGLDVMLSKRVGKIEVdESNHVKGVVFED 216
                    55667779************994456******994 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.00086
                    -EEEBETTSBESTTEEESSBTEEE-STCEES CS
  FAD_binding_2 374 gGvetdengrvldadgqpipGLYAaGevaag 404
                    gG++++ ++++       +++ YA+Ge+a++
     KKY23606.1 250 GGIVVNNSLET------SVKDIYAIGECASW 274
                    9**********......************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1073 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.52
# Mc/sec: 6219.10
//
Query:       KKY23607.1  [L=298]
Description: hypothetical protein UCRPC4_g02870 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 2050.95
//
Query:       KKY23608.1  [L=520]
Description: putative spo7-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-86  287.7   1.0    6.8e-86  287.3   0.0    1.6  2  Spo7      Spo7-like protein


Domain annotation for each model (and alignments):
>> Spo7  Spo7-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.3   0.0   3.8e-90   6.8e-86       1     219 [.      57     277 ..      57     279 .. 0.95
   2 ?   -2.3   0.2      0.14   2.5e+03     148     169 ..     364     384 ..     329     415 .. 0.48

  Alignments for each domain:
  == domain 1  score: 287.3 bits;  conditional E-value: 3.8e-90
        Spo7   1 sspskiyrnLLiLEesLraqalelrarrrkytlflllLalviafflyalflapredgsgvggsvywvvevvekvlliggvvTlvLfwlsGeyertivip 99 
                 ssp++iy+nLLiLE s r+q+l lr+rrr y +flllL+l+  +f+y lfl+predg g ggsvyw++e++ekv+l+ggv T +L+w++G++er++++p
  KKY23608.1  57 SSPPQIYLNLLILECSFRSQYLVLRTRRRLYSFFLLLLFLWNSLFTYLLFLKPREDGLGIGGSVYWFIEMMEKVALMGGVLTGLLMWGTGQWERGVRWP 155
                 89************************************************************************************************* PP

        Spo7 100 rrflsvtNrgLRqfNvklvkvkrslleelldllavllkvgllsese.kssvflvevkir.sqpriasalrekekearlaedlapgaddvkllLlpkafs 196
                 rr+l+v+NrgLR++N+k+v+vk+++++e l ++++l+++  l  ++  s++++ve +i+  +p +++ ++ +e+ a  +edlapg+d++kllLlpk+fs
  KKY23608.1 156 RRWLHVANRGLRTMNTKIVVVKGKWWQESLGHVSFLFPLDSLIGRSpGSEWHYVEHSIShGHPSSRTSHHPEEEIAIVEEDLAPGGDHIKLLLLPKHFS 254
                 ***************************************99876667********999977888855555566666677******************** PP

        Spo7 197 pefRegweiYRaefwerenerrr 219
                 pefRe+we+YRa++we+enerr+
  KKY23608.1 255 PEFRENWEEYRADYWEKENERRA 277
                 **********************8 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.14
        Spo7 148 svflvevkirsqpriasalrek 169
                 +   ++ + ++q+r  s lr++
  KKY23608.1 364 NSSTRHSQQQTQRRR-SLLRSD 384
                 222222222333333.222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1353  (0.0754643); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 3402.57
//
Query:       KKY23609.1  [L=524]
Description: putative alpha beta hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-23   83.1   0.0    3.1e-20   72.9   0.0    2.4  2  Abhydrolase_1    alpha/beta hydrolase fold
    1.5e-16   61.7   5.3    5.9e-16   59.7   5.3    1.9  1  Abhydrolase_6    Alpha/beta hydrolase family
    3.6e-15   55.9   0.0      4e-14   52.5   0.0    2.1  2  Hydrolase_4      Serine aminopeptidase, S33
    0.00016   21.4   0.0    0.00057   19.6   0.0    1.9  2  Esterase         Putative esterase
     0.0031   16.9   0.0     0.0067   15.8   0.0    1.5  1  DUF915           Alpha/beta hydrolase of unknown function (DU
     0.0041   16.7   0.0      0.015   14.9   0.0    1.8  2  LIDHydrolase     Lipid-droplet associated hydrolase
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.042   13.7   0.0    1.9  2  Abhydrolase_3    alpha/beta hydrolase fold
      0.019   13.9   0.0      0.037   12.9   0.0    1.4  1  Chlorophyllase2  Chlorophyllase enzyme
      0.029   14.5   0.3        0.2   11.8   0.3    2.2  1  Thioesterase     Thioesterase domain
      0.031   13.7   0.1       0.05   13.0   0.1    1.2  1  Peptidase_S10    Serine carboxypeptidase
       0.13   12.2   0.0       0.23   11.3   0.0    1.4  1  Lipase_3         Lipase (class 3)
        0.2   10.6   0.0       0.29   10.1   0.0    1.2  1  Chlorophyllase   Chlorophyllase


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.0   2.1e-23   3.1e-20       2     107 ..     153     274 ..     152     300 .. 0.86
   2 !    7.8   0.0    0.0015       2.3     203     257 .]     429     496 ..     350     496 .. 0.69

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 2.1e-23
                    EEEEE-STTTCGGGGTTGHHHHHHHHT.TSEEEEEEETTSTTSSSTTTGB.........CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd.gfdvillDlrGvgySspapacin........ddygtasvaddldrildalgddkltlvGhSmGGmial 88 
                     lvilhG++++++ +++   +++L+++ g+++++lDl+G g+Ss++p  i         ++ + + + d l+  + + ++d++tl+GhS+GG +a 
     KKY23609.1 153 NLVILHGYGAGLGFFYK--NFEGLSRApGWQLYALDLLGMGRSSRPPFRIKskqrpdqiTEAESW-FVDALEEWRIKKKLDRFTLLGHSLGGYLAV 245
                    69***************..9999********************************7777777777.7777777799******************** PP

                    HHHHHHGGGEEEEEEESE..........C CS
  Abhydrolase_1  89 ayaaeyperVkalvllga..........i 107
                    aya++yp r ++lvl ++          +
     KKY23609.1 246 AYALKYPGRLNKLVLASPvgipedpyavS 274
                    ******************77644443332 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0015
                    HHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHC...............HTS.....EEEEEEETCSSSHHHHSH CS
  Abhydrolase_1 203 rlrelknvlaptlvisgtsDplvppkaledlaql...............lpk.....krlvvisdagHlaflegp 257
                    + ++      p+++++g++D+++  +     ++l                       +++v+is agH ++l++p
     KKY23609.1 429 ENGI------PVVMMYGDHDWMDVKGGHAAVEKLelekkkflhaatdgeK-ArengdAKVVIISSAGHHVYLDNP 496
                    2223......***************9999999999777775555444441.045567888888888888888875 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   5.3   3.9e-19   5.9e-16       1     219 [.     154     501 ..     154     502 .. 0.53

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 3.9e-19
                    EEEE--GC.....GCHHHHHHHHCCT.CEEEEE--TTSTS-GGCS--HHH......CHHH.HHHHCCTT.......TTSEEEEEETCHHHHHHHHH CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaag.vhvlapDlpGhGrsdpppldled......ladl.aalldelaa.....gggpvvlvGHSlGGalalaaa 83 
                    ++ lHG g++ + + + ++  l++a  ++ +a+Dl G+Grs++pp+          + +  + ++d+l +       +++ l+GHSlGG+la a  
     KKY23609.1 154 LVILHGYGAGLGFF-YKNFEGLSRAPgWQLYALDLLGMGRSSRPPFRIKSkqrpdqITEAeSWFVDALEEwrikkKLDRFTLLGHSLGGYLAVA-- 246
                    799**977664555.456644455555777***************88877655333333356688888889888888999**************.. PP

                    HCC.......EE.EEES-...............................................----TTTS----TTHHHHHHTT-CCCCHCCH CS
  Abhydrolase_6  84 pla.....lvvg.vlldp.............................................pptalpagllaaalelllallallrllawlsre 128
                     +a     ++ + vl +p                                             p        +++++++l  l+++          
     KKY23609.1 247 -YAlkypgRLNKlVLASPvgipedpyavsadmpdpsesnlaneftqdqerdimeaeapakkpeP-------PRRPLPKWLTYLWDAN--------I 326
                    .888777955665888888877777766666665454444444444444444443322222221.......2222222222222211........1 PP

                    ...................S-HSCCCCHHHCCCCHCHCCCGHH..............................................HHCCHHC CS
  Abhydrolase_6 129 ...................plprlfladedadaawrarlarla..............................................allaglg 159
                                         +r+f + ++                                                           +  +++ 
     KKY23609.1 327 spfsfvrwsgplgprlvsgWTTRRFSHLPP------------DeaqalhqysyslfrlrgsgeyalayilapgafarsplvrriggvgrQPIPSPT 410
                    222222222211222222222223333333............022222223333333444455555444444444444444444433332222333 PP

                    HTTCCHHTT-TTGC.............EEECTT-C.....................HHHHCHHCCCH.STTEEETCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 160 llpaaawadlpvpl.............lvlggeDp.....................lvprllerlla.qagarlpvvlpgaGHlphleepdevae 219
                        + +  +p+++             ++++g+ +                     l++++  + ++   +a++ v++  aGH+++l++p+e+++
     KKY23609.1 411 ---SDTYDSVPASTpspsqkkengipvVMMYGDHDwmdvkgghaaveklelekkkfLHAATDGEKAReNGDAKV-VIISSAGHHVYLDNPEEFNK 501
                    ...33333333333666888999988633354444266666655555555555554333334455557777888.************9*9**976 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   2.7e-17     4e-14       4     114 ..     151     268 ..     148     294 .. 0.82
   2 ?    1.0   0.0      0.14   2.1e+02     186     223 ..     426     462 ..     413     468 .. 0.75

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 2.7e-17
  Hydrolase_4   4 kavvvlvHGlaehsgryaelaeaLaa.qGfavyalDhrGhGrse..gkrghvpsfddyvdDlaafvekvkeehpel....plfllGhSmGGliallyl 94 
                  +  +v++HG++   g + + +e L +  G++ yalD  G Grs   + r + ++  d ++ +++ +  + ee++ +    +++llGhS+GG++a++y+
   KKY23609.1 151 ENNLVILHGYGAGLGFFYKNFEGLSRaPGWQLYALDLLGMGRSSrpPFRIKSKQRPDQITEAESWFVDALEEWRIKkkldRFTLLGHSLGGYLAVAYA 248
                  6789*******************98626****************987777777777777777766544444444444677999*************** PP

  Hydrolase_4  95 lrypdkvaglilsaPalkik 114
                  l+yp ++++l+l++P+  ++
   KKY23609.1 249 LKYPGRLNKLVLASPVGIPE 268
                  ***************86555 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.14
  Hydrolase_4 186 raakitlPllllhGeaDkvvdpeasrelyerlgskdkt 223
                  ++++  +P+ +++G++D+  d ++ ++++e+l  ++k+
   KKY23609.1 426 QKKENGIPVVMMYGDHDWM-DVKGGHAAVEKLELEKKK 462
                  5556669**********96.556667777777766555 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   3.8e-07   0.00057     117     149 ..     232     264 ..     220     324 .. 0.84
   2 ?   -2.6   0.0       2.3   3.4e+03      57      75 ..     430     443 ..     423     465 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.8e-07
                 EEEEEETHHHHHHHHHHHCSTTTCCEEEEES-- CS
    Esterase 117 ravaGqSmGGlgALilalkhpdrFgsvssfSpi 149
                  +++G+S+GG+ A+ +alk+p+r       Sp+
  KKY23609.1 232 FTLLGHSLGGYLAVAYALKYPGRLNKLVLASPV 264
                 6899*******************9999999986 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.3
                 EEEEECCCSS-TTTTTSBT CS
    Esterase  57 eviivvvprggessfysdw 75 
                 + i+vv+ +g+++     w
  KKY23609.1 430 NGIPVVMMYGDHD-----W 443
                 4578888888887.....3 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   4.5e-06    0.0067      66     124 ..     194     251 ..     190     265 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.5e-06
      DUF915  66 knPiikvgfednrdaslkkqakwlkkvlseLkkkYnikkfnavGhSmGglaltsYleey 124
                  +P  +++ ++  d ++ + + w+  +l+e + k ++++f ++GhS Gg  ++ Y+ +y
  KKY23609.1 194 SRPPFRIKSKQRPD-QITEAESWFVDALEEWRIKKKLDRFTLLGHSLGGYLAVAYALKY 251
                 56666777778887.999**************************************998 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.9e-06     0.015      16     116 ..     166     260 ..     158     266 .. 0.74
   2 ?   -1.4   0.0      0.91   1.4e+03      30      49 ..     476     495 ..     460     522 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.9e-06
  LIDHydrolase  16 eFYetFlsllseklnpelevlgishaGfeleeeekeakenekvfsLedQiehkedflkellek.aksekdvklilvGHSvGaYialevlkrlsersi 111
                    FY++F + ls    p +++++  + G+  +++ + + ++++     dQi  +e+ + ++le+ + ++k  ++ l+GHS G Y+a   + +++ r  
    KKY23609.1 166 FFYKNF-EGLSRA--PGWQLYALDLLGMGRSSRPPFRIKSKQR---PDQITEAESWFVDALEEwRIKKKLDRFTLLGHSLGGYLAVAYALKYPGR-L 255
                   566666.445555..6788888888888777777443333333...59******999999999877889999*************9988888877.6 PP

  LIDHydrolase 112 kkvvl 116
                   +k+vl
    KKY23609.1 256 NKLVL 260
                   66666 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.91
  LIDHydrolase  30 npelevlgishaGfeleeee 49 
                   n +++v++is aG+++  ++
    KKY23609.1 476 NGDAKVVIISSAGHHVYLDN 495
                   67889999999999887766 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.8e-05     0.042      58     109 ..     218     272 ..     202     313 .. 0.68
   2 ?   -2.2   0.0         2     3e+03     167     194 ..     432     460 ..     411     471 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.8e-05
                    HHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE........- CS
  Abhydrolase_3  58 wlaeqawelgadpsrivlaGdSaGGnlaaavalrardegepkvagqvliyP........v 109
                     ++e+ w+++ + +r +l+G S GG la a al+   +    ++ +vl +P        +
     KKY23609.1 218 DALEE-WRIKKKLDRFTLLGHSLGGYLAVAYALKYPGR----LNKLVLASPvgipedpyA 272
                    33343.8999999*******************999987....889999999554333331 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2
                    --EEEEEETT-TTHHHH.HHHHHHHHHTT CS
  Abhydrolase_3 167 pptlvvvaefDplrdeg.eayaerlraag 194
                     p++++ +++D++  +g  a  e+l+ ++
     KKY23609.1 432 IPVVMMYGDHDWMDVKGgHAAVEKLELEK 460
                    58999999999997654155666666555 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.5e-05     0.037      66     127 ..     209     264 ..     195     280 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
  Chlorophyllase2  66 aakvlnWlakgLesvlpeevepdlsklalsgHSrGgktafalalgkaktslkfsaligvdPv 127
                      +++   W+ + Le   +  ++ +l++++l gHS Gg+ a+a al++      ++ l+   Pv
       KKY23609.1 209 ITEAESWFVDALE---EWRIKKKLDRFTLLGHSLGGYLAVAYALKYPG---RLNKLVLASPV 264
                      5566678888888...568999**********************9977...44444444444 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   0.00013       0.2      63      87 ..     229     251 ..     153     261 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
                   -SSSSEEEEEETHHHHHHHHHHHHH CS
  Thioesterase  63 qpegPyalfGhSlGgllAfevArqL 87 
                    +   ++l GhSlGg+lA + A ++
    KKY23609.1 229 LD--RFTLLGHSLGGYLAVAYALKY 251
                   33..59************9998775 PP

>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   3.4e-05      0.05     328     413 ..     428     503 ..     409     508 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.4e-05
                    HHTT-EEEEEEETT-STT-HHHHHHHHHHTECTTECCSCCCEEEETTTCESEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHH CS
  Peptidase_S10 328 lesglrvliynGdvDlicnvlgteawikklelsgkkefrpwevspkkengqvaGyvkeyenltfltvkgaGHmvPedkpeealqll 413
                     e+g++v++ +Gd+D  ++v g +a ++klel+ kk  ++++       g+ a   +e +  +++ +  aGH v  d+pee  +++
     KKY23609.1 428 KENGIPVVMMYGDHDW-MDVKGGHAAVEKLELEKKKFLHAATD------GEKA---RENGDAKVVIISSAGHHVYLDNPEEFNKVM 503
                    5678***********7.589************96555555554......3333...333446888**************9977655 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00015      0.23      51      84 ..     216     249 ..     167     266 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
                 HHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHH CS
    Lipase_3  51 vlkelkrllekypeysivvtGHSLGgalAlLaal 84 
                 + + l+++  k++  ++++ GHSLGg lA+  al
  KKY23609.1 216 FVDALEEWRIKKKLDRFTLLGHSLGGYLAVAYAL 249
                 5566777666777789*************87665 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00019      0.29     113     153 ..     223     266 ..     154     278 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00019
  Chlorophyllase 113 tsveanlsklalvGhsrGGktafalalgys...seltfsaliGv 153
                       ++ +l++++l Ghs GG  a a al+y    ++l +++ +G+
      KKY23609.1 223 WRIKKKLDRFTLLGHSLGGYLAVAYALKYPgrlNKLVLASPVGI 266
                     46788999********************9855555556655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 3324.92
//
Query:       KKY23610.1  [L=1220]
Description: putative translation regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-19   69.1   2.3    5.2e-05   23.2   0.0    8.1  8  PPR        PPR repeat
    9.6e-18   64.1   0.0      2e-09   37.5   0.0    6.0  7  PPR_2      PPR repeat family
    1.2e-14   54.2   0.0    5.4e-06   26.4   0.0    5.8  7  PPR_3      Pentatricopeptide repeat domain
    7.2e-13   48.0   0.0     0.0019   17.9   0.0    4.8  4  PPR_1      PPR repeat
    4.9e-09   35.9   0.4    3.7e-07   29.7   0.3    2.8  2  PPR_long   Pentacotripeptide-repeat region of PRORP
     0.0018   19.0   8.1       0.73   10.8   0.0    6.4  7  TPR_14     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.048   13.5   0.1          2    8.3   0.0    3.3  3  ATP13      Mitochondrial ATPase expression
      0.056   13.4   0.0       0.16   11.9   0.0    1.8  1  TetR_C_14  MftR C-terminal domain
       0.17   12.6   2.6        1.5    9.6   0.0    3.7  4  TPR_16     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0         9   1.8e+04      10      22 ..     133     145 ..     133     146 .. 0.85
   2 ?    4.8   0.0      0.02        39       8      28 ..     357     377 ..     356     379 .. 0.90
   3 !   23.2   0.0   2.6e-08   5.2e-05       3      30 ..     424     451 ..     422     452 .. 0.93
   4 !    8.6   0.0    0.0012       2.4       1      20 [.     457     476 ..     457     478 .. 0.91
   5 !   13.3   0.0   3.8e-05     0.076       5      24 ..     496     515 ..     493     520 .. 0.89
   6 ?   -1.5   0.0       2.1   4.1e+03       3      30 ..     530     557 ..     529     558 .. 0.84
   7 ?    0.2   0.0      0.59   1.2e+03       3      24 ..     565     586 ..     564     589 .. 0.84
   8 !    8.8   0.0     0.001         2       3      29 ..     601     627 ..     599     628 .. 0.91

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 9
         PPR  10 ycknGkleeAlel 22 
                 y+ n ++e+A +l
  KKY23610.1 133 YVANDRFEDAASL 145
                 78899*****887 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.02
         PPR   8 sgycknGkleeAlelfkeMke 28 
                  +++k+G+ + ++e+f e ++
  KKY23610.1 357 TACAKAGDARAVEEIFAEFQK 377
                 69**************99876 PP

  == domain 3  score: 23.2 bits;  conditional E-value: 2.6e-08
         PPR   3 ynslIsgycknGkleeAlelfkeMkekG 30 
                 +n+l+ +++++ +le A+e+f++Mk  +
  KKY23610.1 424 WNTLLYAFARADNLEGAVEIFNKMKAAN 451
                 ************************9766 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0012
         PPR   1 vtynslIsgycknGkleeAl 20 
                 +ty +++s ++++G+le +l
  KKY23610.1 457 FTYGTVMSICAQAGDLESVL 476
                 69**************9876 PP

  == domain 5  score: 13.3 bits;  conditional E-value: 3.8e-05
         PPR   5 slIsgycknGkleeAlelfk 24 
                 +++++yc+nG++e A+e+ +
  KKY23610.1 496 TIVRAYCRNGEPERAEEVVE 515
                 789**************976 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 2.1
         PPR   3 ynslIsgycknGkleeAlelfkeMkekG 30 
                 +nsl+  ++ + + ++ l++ ++Mke +
  KKY23610.1 530 WNSLLIHHSLHANTSKLLRIQERMKELD 557
                 9999999999999999999999999876 PP

  == domain 7  score: 0.2 bits;  conditional E-value: 0.59
         PPR   3 ynslIsgycknGkleeAlelfk 24 
                 y +++ ++ k Gk ++Al++++
  KKY23610.1 565 YAAWMLSLTKVGKSKDALRILR 586
                 556778899*********9986 PP

  == domain 8  score: 8.8 bits;  conditional E-value: 0.001
         PPR   3 ynslIsgycknGkleeAlelfkeMkek 29 
                 y ++++gy+k+G+ + + +l+ e++e+
  KKY23610.1 601 YAIVMNGYAKEGNRDQVTRLYSELLER 627
                 7799*******************9886 PP

>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.8   5.5e+03       2      31 ..     348     377 ..     347     378 .. 0.76
   2 !   37.5   0.0     1e-12     2e-09       5      48 ..     423     466 ..     419     468 .. 0.92
   3 ?    3.9   0.0     0.031        61       8      26 ..     496     514 ..     491     520 .. 0.88
   4 ?    2.5   0.0     0.088   1.7e+02       5      41 ..     529     565 ..     525     574 .. 0.88
   5 ?   -1.0   0.0       1.1   2.2e+03       1      26 [.     560     585 ..     560     586 .. 0.87
   6 !   10.9   0.0    0.0002       0.4       6      40 ..     601     635 ..     597     643 .. 0.90
   7 ?   -0.1   0.0      0.56   1.1e+03       8      45 ..     872     909 ..     870     914 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.8
       PPR_2   2 dvvtyNtlIsglckkgkveeAfklfneMkk 31 
                 d  +y   +++++k+g+ +   ++f e +k
  KKY23610.1 348 DERAYQLSLTACAKAGDARAVEEIFAEFQK 377
                 555666678899999999999999988766 PP

  == domain 2  score: 37.5 bits;  conditional E-value: 1e-12
       PPR_2   5 tyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikgl 48 
                  +Ntl+ +++++ ++e A+++fn+Mk  +++P+ +Ty ++++ +
  KKY23610.1 423 LWNTLLYAFARADNLEGAVEIFNKMKAANFKPDQFTYGTVMSIC 466
                 6**************************************99766 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.031
       PPR_2   8 tlIsglckkgkveeAfklf 26 
                 t+  ++c++g++e A ++ 
  KKY23610.1 496 TIVRAYCRNGEPERAEEVV 514
                 7899***********9986 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.088
       PPR_2   5 tyNtlIsglckkgkveeAfklfneMkkrglePnsyTy 41 
                  +N+l+ ++  + + ++ +++ + Mk+  ++P++  y
  KKY23610.1 529 LWNSLLIHHSLHANTSKLLRIQERMKELDIRPDAGAY 565
                 69999999999999999****************8666 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 1.1
       PPR_2   1 pdvvtyNtlIsglckkgkveeAfklf 26 
                 pd  +y + +  l k gk+++A++++
  KKY23610.1 560 PDAGAYAAWMLSLTKVGKSKDALRIL 585
                 6777899999999*********9975 PP

  == domain 6  score: 10.9 bits;  conditional E-value: 0.0002
       PPR_2   6 yNtlIsglckkgkveeAfklfneMkkrglePnsyT 40 
                 y ++++g++k+g+ ++  +l++e  +r   P+ +T
  KKY23610.1 601 YAIVMNGYAKEGNRDQVTRLYSELLERPGGPDIST 635
                 899************************88899988 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 0.56
       PPR_2   8 tlIsglckkgkveeAfklfneMkkrglePnsyTysili 45 
                  +++ l++++ +e    l   M++ g+  +s+  ++ i
  KKY23610.1 872 NYMHSLARQNLYERLPPLIANMQRVGFALDSKNWNSYI 909
                 678999999999999999999***99999998777666 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0058        11      22      43 ..     356     377 ..     347     379 .. 0.88
   2 !   26.4   0.0   2.7e-09   5.4e-06       9      61 ..     415     467 ..     413     469 .. 0.95
   3 ?    3.8   0.0     0.031        62       3      39 ..     479     515 ..     477     522 .. 0.87
   4 !    9.1   0.0   0.00066       1.3      19      54 ..     531     566 ..     525     574 .. 0.83
   5 !    7.4   0.0    0.0024       4.7       1      39 [.     548     586 ..     548     589 .. 0.89
   6 ?   -3.4   0.0       5.5   1.1e+04      17      37 ..     600     620 ..     595     627 .. 0.78
   7 ?   -1.9   0.0       1.9   3.7e+03       3      26 ..     890     913 ..     889     930 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0058
       PPR_3  22 Ltayanagnkklalevlermkk 43 
                 Lta+a+ag+ ++++e++++ +k
  KKY23610.1 356 LTACAKAGDARAVEEIFAEFQK 377
                 9****************99876 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 2.7e-09
       PPR_3   9 kgikldvvtYthLLtayanagnkklalevlermkkkgikPtvvtyNailgvig 61 
                  g++ d   +++LL a+a+a n++ a e++++mk    kP   ty  +++++ 
  KKY23610.1 415 LGVQADKALWNTLLYAFARADNLEGAVEIFNKMKAANFKPDQFTYGTVMSICA 467
                 699999999*****************************************995 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.031
       PPR_3   3 lremerkgikldvvtYthLLtayanagnkklalevle 39 
                   ++e+ +i l   +  ++ +ay ++g+ ++a+ev+e
  KKY23610.1 479 AADAEQADIPLTNHMLDTIVRAYCRNGEPERAEEVVE 515
                 567888888888889999*****************97 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00066
       PPR_3  19 thLLtayanagnkklalevlermkkkgikPtvvtyN 54 
                 ++LL    +  n   +l+++ermk+  i+P    y 
  KKY23610.1 531 NSLLIHHSLHANTSKLLRIQERMKELDIRPDAGAYA 566
                 677777788889999***************877775 PP

  == domain 5  score: 7.4 bits;  conditional E-value: 0.0024
       PPR_3   1 silremerkgikldvvtYthLLtayanagnkklalevle 39 
                 +i + m++ +i++d   Y + +    ++g+ k+al++l 
  KKY23610.1 548 RIQERMKELDIRPDAGAYAAWMLSLTKVGKSKDALRILR 586
                 577889**************998899**********986 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 5.5
       PPR_3  17 tYthLLtayanagnkklalev 37 
                  Y   +++ya+ gn++ + + 
  KKY23610.1 600 HYAIVMNGYAKEGNRDQVTRL 620
                 677788999999999988765 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 1.9
       PPR_3   3 lremerkgikldvvtYthLLtaya 26 
                 + +m+r g+ ld   +++ ++++a
  KKY23610.1 890 IANMQRVGFALDSKNWNSYIQLMA 913
                 578999999998766666655544 PP

>> PPR_1  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   9.4e-07    0.0019       2      34 .]     416     448 ..     415     448 .. 0.94
   2 !    8.4   0.0   0.00085       1.7       2      24 ..     451     473 ..     450     474 .. 0.92
   3 !   13.9   0.0   1.6e-05     0.032      12      31 ..     496     515 ..     492     517 .. 0.94
   4 ?    1.1   0.0      0.16   3.3e+02      10      22 ..     601     613 ..     597     623 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 9.4e-07
                 S----HHHHHHHHHHHHHTS-HHHHHHHHHHHH CS
       PPR_1   2 GlkPdvvTYNtLIdGlCkaGrvdeAfelfdeMe 34 
                 G++ d   +NtL+ ++ +a +++ A+e+f++M+
  KKY23610.1 416 GVQADKALWNTLLYAFARADNLEGAVEIFNKMK 448
                 78889999************************7 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00085
                 S----HHHHHHHHHHHHHTS-HH CS
       PPR_1   2 GlkPdvvTYNtLIdGlCkaGrvd 24 
                 ++kPd +TY t+ + + +aG+++
  KKY23610.1 451 NFKPDQFTYGTVMSICAQAGDLE 473
                 579*****************997 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHTS-HHHHHHHHH CS
       PPR_1  12 tLIdGlCkaGrvdeAfelfd 31 
                 t++ ++C++G+ ++A+e+++
  KKY23610.1 496 TIVRAYCRNGEPERAEEVVE 515
                 99****************97 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.16
                 HHHHHHHHHHTS- CS
       PPR_1  10 YNtLIdGlCkaGr 22 
                 Y ++ +G+ k+G+
  KKY23610.1 601 YAIVMNGYAKEGN 613
                 999*********8 PP

>> PPR_long  Pentacotripeptide-repeat region of PRORP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.028        55      11      38 ..     349     376 ..     313     400 .. 0.84
   2 !   29.7   0.3   1.9e-10   3.7e-07      20     184 ..     430     586 ..     417     608 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.028
                 HHHHHHHHHHHHHHT-HHHHHHHHHHHH CS
    PPR_long  11 eselrrqldkCskekDaaaAlelydkav 38 
                 e  ++ +l+ C+k++Da+a  e++ +  
  KKY23610.1 349 ERAYQLSLTACAKAGDARAVEEIFAEFQ 376
                 5678889999999999998888887655 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 1.9e-10
                 HHHHHT-HHHHHHHHHHHHHSSS---HHHHHHHHHHHHHC.HCSTTTHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
    PPR_long  20 kCskekDaaaAlelydkavaegvrlaqyhynvllylcskaeaaseskknkalargfevfeamkakgvspnEatvtalarlaaakedgdlafelvkemek 118
                   +++  +++A+e+++k++a + +  q +y +++ +c++a +         l++++++ ++++++ ++    ++ +++r    +++ ++a+e+v+   +
  KKY23610.1 430 AFARADNLEGAVEIFNKMKAANFKPDQFTYGTVMSICAQAGD---------LESVLHIAADAEQADIPLTNHMLDTIVRAYCRNGEPERAEEVVEAAVR 519
                 5588999******************************99853.........567999*************************************99765 PP

                 H-.S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCT----HHHHHHHHHHHHHTT-HHHHHHHHH CS
    PPR_long 119 ag.vsPrLRsyaPaLaayckagdadkaleveehlkasgveleEaelaaLLkvsakagredkvYelLh 184
                 ++  +   R ++ +L  ++   ++ k l ++e++k  +++++   +aa +   +k g+ +   ++L 
  KKY23610.1 520 MQsPEQTVRLWNSLLIHHSLHANTSKLLRIQERMKELDIRPDAGAYAAWMLSLTKVGKSKDALRILR 586
                 54156789***********************************999998877777777766555554 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.4   2.8e+03       9      29 ..     131     151 ..     129     158 .. 0.79
   2 ?   -3.3   0.1         9   1.8e+04      10      32 ..     284     306 ..     276     310 .. 0.63
   3 ?    5.3   0.0     0.022        44       3      27 ..     423     447 ..     421     459 .. 0.85
   4 !   10.8   0.0   0.00036      0.73       5      35 ..     495     526 ..     492     534 .. 0.82
   5 ?    0.2   0.1      0.92   1.8e+03       3      28 ..     564     589 ..     562     604 .. 0.77
   6 ?   -1.5   0.0       3.3   6.6e+03      10      30 ..     607     627 ..     597     641 .. 0.77
   7 ?   -2.0   0.0       4.8   9.6e+03      15      37 ..    1056    1075 ..    1052    1079 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.4
      TPR_14   9 eallalGdpdeAiallrrala 29 
                 e++ a++++++A+ l  ++ +
  KKY23610.1 131 EFYVANDRFEDAASLIADVNK 151
                 799*********999988766 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9
      TPR_14  10 allalGdpdeAiallrralalaP 32 
                 a +a+ +++ A+ l+r +  ++P
  KKY23610.1 284 ADAARNRWEIAVMLYRILRHRFP 306
                 34566778888888887766666 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.022
      TPR_14   3 allalaeallalGdpdeAiallrra 27 
                 ++  l+ a+++++++++A+++++++
  KKY23610.1 423 LWNTLLYAFARADNLEGAVEIFNKM 447
                 78899*****************987 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.00036
      TPR_14   5 lalaeallalGdpdeAiallrrala.laPdda 35 
                   +++a+ ++G+p++A+++ ++a++ + P++ 
  KKY23610.1 495 DTIVRAYCRNGEPERAEEVVEAAVRmQSPEQT 526
                 56789******************997788763 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.92
      TPR_14   3 allalaeallalGdpdeAiallrral 28 
                 a++a    l   G+ ++A+++lr++ 
  KKY23610.1 564 AYAAWMLSLTKVGKSKDALRILRALH 589
                 677777778888999********983 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 3.3
      TPR_14  10 allalGdpdeAiallrralal 30 
                  ++  G+ d+  +l+ ++l++
  KKY23610.1 607 GYAKEGNRDQVTRLYSELLER 627
                 58889999********99996 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 4.8
      TPR_14   15 GdpdeAiallrralalaPddaea 37  
                  G +  Aia ++++    Pdd ea
  KKY23610.1 1056 GLLTPAIATFEDL---SPDDMEA 1075
                  7788899999999...8999887 PP

>> ATP13  Mitochondrial ATPase expression
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.27   5.4e+02      47      83 ..     115     152 ..     100     161 .. 0.78
   2 ?   -2.0   0.0       1.6   3.2e+03      58      79 ..     425     446 ..     417     450 .. 0.72
   3 ?    8.3   0.0   0.00099         2      50      98 ..     487     534 ..     460     545 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.27
       ATP13  47 dsplyP.tselLkaivssfsynneiesAlklvdkfskk 83 
                  s + P   ++++ i++ + +n+++e A +l+ ++ k+
  KKY23610.1 115 ASATTPyILQTMAPIFEFYVANDRFEDAASLIADVNKH 152
                 55555534688999***************999988776 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.6
       ATP13  58 kaivssfsynneiesAlklvdk 79 
                  +++ +f+  +++e A+++ +k
  KKY23610.1 425 NTLLYAFARADNLEGAVEIFNK 446
                 5667778888888888888776 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00099
       ATP13  50 lyPtselLkaivssfsynneiesAlklvdkfskkYpeielkkefWeell 98 
                 +  t+++L +iv +++ n+e e+A ++v++ ++  +  e   ++W++ll
  KKY23610.1 487 IPLTNHMLDTIVRAYCRNGEPERAEEVVEAAVRMQS-PEQTVRLWNSLL 534
                 34499***********************99988877.788888888886 PP

>> TetR_C_14  MftR C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.2e-05      0.16      63     109 ..     970    1017 ..     968    1020 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.2e-05
                  S-TTSHHHHHHHHHHHHHHHHHHHHHHH-TT.S-HHHHHHHHHHHHHH CS
   TetR_C_14   63 tdaddlvprtvaaavlaaalaayeqwladed.adlaelLdealdllaa 109 
                   d+d+l+p     ++l+aal+ ++q  a+++ ++l  lL+ a++++a 
  KKY23610.1  970 IDPDALYPHYRTLVFLGAALVRFRQRSANDEgTELHRLLQTAMKSVAV 1017
                  689*************************9999***********99975 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1         9   1.8e+04       7      19 ..     133     145 ..     133     148 .. 0.76
   2 ?   -1.9   0.3       2.7   5.5e+03       9      24 ..     280     295 ..     276     306 .. 0.53
   3 ?   -0.0   0.0      0.74   1.5e+03      35      64 ..     422     450 ..     398     454 .. 0.71
   4 ?    9.6   0.0   0.00074       1.5       5      38 ..     499     531 ..     496     538 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 9
      TPR_16   7 alragdyddAaaa 19 
                 ++++ +++dAa +
  KKY23610.1 133 YVANDRFEDAASL 145
                 5778889999976 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.7
      TPR_16   9 ragdyddAaaaleaal 24 
                 ra+  d+A++++e+a+
  KKY23610.1 280 RARGADAARNRWEIAV 295
                 4555555555555543 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.74
      TPR_16  35 eAllllgdaalrqgrlaeAaalyraalraa 64 
                 + ++ l  a++r+ +l++A++ ++++ +aa
  KKY23610.1 422 ALWNTLLYAFARADNLEGAVEIFNKM-KAA 450
                 45555667777999999999999988.444 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.00074
      TPR_16   5 raalragdyddAaaaleaalkrdpssPdaaeAll 38 
                 ra+ r+g++++A+++ eaa++++ s+ ++++ ++
  KKY23610.1 499 RAYCRNGEPERAEEVVEAAVRMQ-SPEQTVRLWN 531
                 78999******************.4444666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.52
# Mc/sec: 7052.71
//
Query:       KKY23611.1  [L=696]
Description: putative signal recognition [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.7e-152  508.6   0.0   3.8e-108  362.9   0.7    2.1  2  SRP68           RNA-binding signal recognition particle 68
    4.2e-32  109.7   0.5    7.6e-32  108.9   0.5    1.4  1  ubiquitin       Ubiquitin family
      4e-31  106.7  11.8    7.6e-31  105.8  11.8    1.5  1  Ribosomal_L40e  Ribosomal L40e family
    1.7e-13   50.2   0.4    3.4e-13   49.2   0.4    1.5  1  Rad60-SLD       Ubiquitin-2 like Rad60 SUMO-like
    0.00062   20.2   0.1      0.002   18.6   0.1    1.8  1  Ubiquitin_2     Ubiquitin-like domain
  ------ inclusion threshold ------
      0.044   14.1   0.0       0.11   12.9   0.0    1.6  1  Ubiquitin_5     Ubiquitin-like domain
      0.048   13.6   0.0      0.097   12.6   0.0    1.4  1  TBK1_ULD        TANK binding kinase 1 ubiquitin-like domain


Domain annotation for each model (and alignments):
>> SRP68  RNA-binding signal recognition particle 68
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.9   0.7  1.5e-111  3.8e-108       3     343 ..      17     364 ..      15     369 .. 0.96
   2 !  143.3   0.0   5.1e-45   1.3e-41     379     559 .]     369     537 ..     368     537 .. 0.92

  Alignments for each domain:
  == domain 1  score: 362.9 bits;  conditional E-value: 1.5e-111
                 SS-HHHHHHHHHHHHHHHHHHTT--SS----SS-TT.--HHHHHH-THHHHHHHHHHHHHHHHHHHHHHHTCTT..TTTS-HHHHHHHHHHHHHHHHHH CS
       SRP68   3 hgDYqrYrqyltrrLrrlRkkLkfatgkrgkyakka.itaeqvatdvrylhllLltaERaWAyamalKaehsad..kkgitgrkRshivsRLrKAaklA 98 
                  gD+ +Yr++ +rr+r+lR++L++at+k++ky++ka i+ ++v +d+++++llLl aER+WA ama+K++  ad  +++itg +R++i+sRL+KA+ +A
  KKY23611.1  17 GGDHDAYRAQASRRIRTLRRRLGIATPKGRKYTAKApIKSDDVRKDEEFIQLLLLDAERSWASAMAMKSARVADsaHEAITGATRRQIISRLNKATSYA 115
                 59*********************************************************************99999999******************** PP

                 HHHHHHHHC..S.-S--HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHH.TTTHHHHHHHTHH...HHHHHHHHHCT-SSS--HH CS
       SRP68  99 eeLvellse..assgadertkLEarAYaallrGallfekqqWekalesyskaraiyeaLakvt.seefkdllsetveelePsiRYcaYqlkeprtapse 194
                 + Lv++l+   +++   ++t LEa AY ++l+G+l fek +W+++l+s++++r+iy+aL  +t ++ +kdlls+tv+   PsiRY+ Yql+ prt+p++
  KKY23611.1 116 ASLVSVLRGlaKEEPGLSKTLLEAIAYQSYLKGSLCFEKGSWQNCLNSFAVSRVIYDALTVQTkKDIYKDLLSSTVD---PSIRYATYQLRLPRTKPIS 211
                 *******9998788999************************************************************...******************* PP

                 HHHHHHHHH-.XXXXXXXXXXXXXXXXXXXXXXXX.X....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX CS
       SRP68 195 tiarkafekaendllqskiekldpealkeqaaskssk....apseitWrgrevkvedakirlalaavqeakaeleees.kssakekaaaYdkvLiasqD 288
                 +ia ++f+++  d ++  + k+ p+a + q + ++ +     ps+itWr+r+v+v da+i+ a+++++ a+++l +++ + ++++ ++ Yd++++a q+
  KKY23611.1 212 EIAVEHFPSE-YDDVKTAVVKICPNAFNPQVNRDRAGngraGPSKITWRSRTVDVGDAAISEAILSAELAESKLLAGDqDIDQERLMSVYDEIINARQE 309
                 *********9.9999*****999999999888755558888*********************************9955579999*************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       SRP68 289 avdatkqaidelekegvaqsdkrmqslqilrtavnyeklswrieRnrvlvgeadg 343
                 avdatk+aide  +eg +qsd+r+qslqi+rtavny++++wri+R+r+l+g +dg
  KKY23611.1 310 AVDATKSAIDETISEGIDQSDSRVQSLQITRTAVNYALIEWRIGRDRMLCGVNDG 364
                 ***************************************************9887 PP

  == domain 2  score: 143.3 bits;  conditional E-value: 5.1e-45
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXX CS
       SRP68 379 slesikelpgvaadeelaeeleakkayfrAlrclyiarshalaskyaeAlALlkrAlelaeealeelsksdaksk..peslevlleelqeLadelkgel 475
                 sl ++ elpgvaad ++++ele k+ayfrA rcl+i+rs+  +sk+ +AlAL++rA+el+ +a+  l++s ++ +  +++l++++ +l+   + l++ +
  KKY23611.1 369 SLGAVRELPGVAADLDFVQELEGKTAYFRAARCLAIGRSYVRQSKWPNALALFSRAHELLLTASGFLNASLKDGSiiAPRLDISKVQLDGFGSFLRSIV 467
                 57789**********************************************************999999988656899********************* PP

                 XXXXXXXXX..XXXXX.............XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       SRP68 476 qrarAlveleelkkeeeslkkslsklslsekaaakkkkkpllerLdeypssggevdlknlvelPPklepvpvKPiflDvAlNyI 559
                  ++r+lvel++l+k++   +      +l+     ++++ pl ++Ld+yp++   vdl+nlv++PPk+e++pvKP+f+D+A+NyI
  KKY23611.1 468 IQYRGLVELHNLTKSK---D-----KALD----PSTSTVPLGKQLDQYPEHT--VDLHNLVSYPPKIEAIPVKPLFFDLAWNYI 537
                 **********988888...2.....2222....256799**********965..8****************************9 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   0.5     3e-35   7.6e-32       2      72 .]     572     642 ..     572     642 .. 0.99

  Alignments for each domain:
  == domain 1  score: 108.9 bits;  conditional E-value: 3e-35
                 EEEETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESSC CS
   ubiquitin   2 tvktldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrlr 72 
                 +vktl+gk+itleve+sdt++++K ki++kegip++qqrLi++Gk+Led rtl++y+iq++stlhlvlrlr
  KKY23611.1 572 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 642
                 8*******************************************************************986 PP

>> Ribosomal_L40e  Ribosomal L40e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8  11.8     3e-34   7.6e-31       1      50 []     646     695 ..     646     695 .. 0.99

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 3e-34
  Ribosomal_L40e   1 iepsLrqLAqKyncdKmiCrkCYArlpprAtnCrkkkCghsnnlrpKKkl 50 
                     iepsL++LA+KyncdKmiCrkCYArlpprAtnCrkkkCgh+n+lrpKKkl
      KKY23611.1 646 IEPSLKALASKYNCDKMICRKCYARLPPRATNCRKKKCGHTNQLRPKKKL 695
                     8***********************************************96 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.4   1.3e-16   3.4e-13       4      72 .]     572     639 ..     572     639 .. 0.98

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 1.3e-16
                 EEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEEX CS
   Rad60-SLD   4 ilkgkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvvi 72 
                 ++k+ +gk+++++V+++ t+ +++++ ++k+gip+ +++rLiF G++L++  t+ d+ i++++t+++v+
  KKY23611.1 572 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 639
                 699********************************.******************************986 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   7.6e-07     0.002      19      80 ..     584     637 ..     574     638 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 7.6e-07
                  EEETTSBHHHHHHHHHHHH---TTCEEEEEE.-SSSSEEECSSGCCSBCCCCT--TTEEEEE CS
  Ubiquitin_2  19 rfsksltieelKekLelitGtspasmrLqlyddkkdnevsklddddalLgsYgvkdgmrihV 80 
                   +++s+ti+++K+k++   G++p+++rL +          k  +d ++L++Y+++  +++h 
   KKY23611.1 584 EVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHL 637
                  57889************************99........56678999********9999995 PP

>> Ubiquitin_5  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.3e-05      0.11      34      92 ..     581     640 ..     572     644 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.3e-05
  Ubiquitin_5  34 klletkLdvtgkelvskiaeefglkensiKlilngklleldktLeeQgvknnskv.mvLk 92 
                   +le++ + t +++ ski ++ g+  ++ +li  gk+le ++tL + +++++s + +vL+
   KKY23611.1 581 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLhLVLR 640
                  55666666678899999999****99***********************99987536666 PP

>> TBK1_ULD  TANK binding kinase 1 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.8e-05     0.097      19      53 ..     585     619 ..     578     637 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.8e-05
    TBK1_ULD  19 ihpyntvaifqeevakqTkiaaekQellfeghrll 53 
                 +++ +t++++  +++++  i++++Q l+f g++l 
  KKY23611.1 585 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 619
                 67899***************************974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.51
# Mc/sec: 4085.94
//
Query:       KKY23612.1  [L=693]
Description: putative yip1 domain family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-19   69.0   0.0    7.2e-19   68.3   0.0    1.3  1  RabGAP-TBC  Rab-GTPase-TBC domain
    2.3e-14   53.5  14.0    7.3e-14   51.9  14.1    1.8  2  Yip1        Yip1 domain
  ------ inclusion threshold ------
       0.12   11.9   3.0      0.078   12.5   0.7    1.9  2  YIF1        YIF1


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   1.2e-22   7.2e-19       2     215 .]      59     261 ..      58     261 .. 0.88

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 1.2e-22
  RabGAP-TBC   2 elRgevWklllgyepevkrlkksekkqeksekeksklekseeskelsqIkkDvprtfp....esesfknkqgqnqLeriLkaysiynpevgYcqGmndi 96 
                  lR ++W+lllg             ++     +++ +e  + +k++ q+++Dv+r f      +++ + +  +++L+++++     +p + Y+qG +di
  KKY23612.1  59 GLRVDAWPLLLGCD-----------SESLTLGNDDAWEGLPCHKDEDQVELDVNRAFVyypnGQSEADLAVRKKALSSLIRRTLRSHPMLCYFQGYHDI 146
                 5899*********5...........47788899999*********************976533388888899*************************** PP

  RabGAP-TBC  97 vaplllvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeegldlelfaikwfltlflrefpl.etvlrlwDllleg 194
                 v+++llv +d + a   + +L    ++rd++ +sl+  ++ l +l  ll + d +l++h+ +   +  +fa+   ltl++++++  + ++rl+D+ll +
  KKY23612.1 147 VQVMLLVLGDNR-AAGPIERLS-LLRIRDFMLPSLRPAEKHLLLLPALLDIADRELCQHIGQ---TKPYFALGSTLTLYAHDVQDyKDIVRLYDFLLSQ 240
                 *****8888888.777788888.799**********************************55...5568***********777654********99977 PP

  RabGAP-TBC 195 ekfvllrvalailklleeell 215
                 e ++ +++ +a++ + +eell
  KKY23612.1 241 EPVIAIYLFAALIISRKEELL 261
                 878889988886666667765 PP

>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.54   3.2e+03       7      41 ..     351     381 ..     350     401 .. 0.68
   2 !   51.9  14.1   1.2e-17   7.3e-14       2     165 ..     485     654 ..     484     668 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.54
        Yip1   7 evfrrlkkeppilrapdlallllalltlllgllas 41 
                 +v++++ +++     p   +++ +l++++ ++l  
  KKY23612.1 351 KVMAQISRNRQ----PATRIAFGVLVGVMALWLRR 381
                 56777777777....77777777777777777766 PP

  == domain 2  score: 51.9 bits;  conditional E-value: 1.2e-17
        Yip1   2 lldPrevfrrlkkepp........ilrapdlallllalltlllgllaslnlgqtlasg...eevqgltlssllgaiiggylglllgllllalllhliak 89 
                  +d++ v  r  +  +        +  +pdl++++++++t++++l+++++++q+la     +++++++l+s ++++i+gy g ++++ l+a+l ++   
  KKY23612.1 485 DVDTSTVLNRCLATVYprtnfldiLDGNPDLYGPFWIATTVVVILFLTGTISQYLARRhegHFEYDFKLLSGAAGLIYGYTG-VVPVGLWAVLRWF--- 579
                 6777888788888888888888888999********************9999999999999********************9.************9... PP

        Yip1  90 llggkgs.fkqtlsvvgyallPlilgaliaillllllgtllllvgllaliWslvllylglkaahnlskk..kallaali 165
                   g++g    ++++++gy+ l +i+ al++  ++++l++  llvgl +++ +++ll +  +++  ++kk  + ll++++
  KKY23612.1 580 --GSQGAdVVECWALYGYSNLLWIVVALLSWSPINWLNY--LLVGLGFAASVAFLLRNLYPVLSATDKKtsQVLLIVVV 654
                 ..977766******************************8..99999999999999988888888888884444444444 PP

>> YIF1  YIF1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.45   2.7e+03      34      57 ..     478     501 ..     471     504 .. 0.76
   2 ?   12.5   0.7   1.3e-05     0.078     146     209 ..     582     643 ..     510     665 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.45
        YIF1  34 salkyyFnVsnsYVlkKlllllfP 57 
                 s  +++F V++s Vl++ l  ++P
  KKY23612.1 478 SFYSQFFDVDTSTVLNRCLATVYP 501
                 556789********9987766655 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.3e-05
        YIF1 146 sasslldlvaysgYkfvgvivtlllklllgeglvyylvllylvlalafFllrsLklvllpease 209
                 + + ++++ a+ gY     iv+ ll+    +  ++yl++   ++a + Fllr+L + +l+ +++
  KKY23612.1 582 QGADVVECWALYGYSNLLWIVVALLSWSPINW-LNYLLVGLGFAASVAFLLRNL-YPVLSATDK 643
                 347899************99999999996665.*********************.555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.53
# Mc/sec: 3959.43
//
Query:       KKY23613.1  [L=2251]
Description: putative mitochondrial translation initiation factor if [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.4e-41  140.0   0.0    2.1e-21   76.2   0.0    2.4  2  MMS1_N       Mono-functional DNA-alkylating methyl methanesul
    2.7e-33  115.1   0.0    9.2e-33  113.4   0.0    1.9  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    2.6e-19   69.3   0.1    6.2e-19   68.1   0.1    1.6  1  IF-2         Translation-initiation factor 2
    1.5e-08   34.5   0.1    4.9e-08   32.8   0.1    2.0  1  GTP_EFTU_D4  Elongation factor Tu domain 4
    3.6e-08   33.7   3.6    6.3e-08   32.9   0.0    3.1  3  GTP_EFTU_D2  Elongation factor Tu domain 2
    6.2e-07   29.0   0.0    1.7e-06   27.6   0.0    1.8  1  CPSF_A       CPSF A subunit region
    4.8e-06   26.6   0.2      3e-05   24.1   0.0    2.6  3  MMR_HSR1     50S ribosome-binding GTPase
    0.00046   20.4   0.0     0.0011   19.1   0.0    1.7  1  Roc          Ras of Complex, Roc, domain of DAPkinase
  ------ inclusion threshold ------
      0.036   13.9   0.0      0.081   12.7   0.0    1.6  1  ATP_bind_1   Conserved hypothetical ATP binding protein
       0.21   11.5   0.7          1    9.3   0.4    2.3  2  RsgA_GTPase  RsgA GTPase


Domain annotation for each model (and alignments):
>> MMS1_N  Mono-functional DNA-alkylating methyl methanesulfonate N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.0   1.1e-24   2.1e-21       1     142 [.     138     286 ..     138     309 .. 0.84
   2 !   61.2   0.0   3.9e-20     7e-17     312     461 ..     334     489 ..     310     517 .. 0.78

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 1.1e-24
      MMS1_N   1 DlLvvgsdsgelvfl.synpeknqfetvhshetlgksgsrrsqpGqylavDPkgraiavsayekvflvyslkkkeilnrealll.ssplea......rk 91 
                 +lLv++++s +++f+   +++++++++    + l+++ s++ q+Gq+lavDP++raia++a  + ++++slk++ +l++e+++   +p+        ++
  KKY23613.1 138 QLLVLVLESQQVLFIyCRDNSEGSVDFYIRTRALPRELSSLPQYGQHLAVDPQSRAIAIAAPFGHVGIMSLKSADALTQESQSGeTKPIMPvteerfFR 236
                 79*************866677899999999*******************************************666666444444555553455899** PP

      MMS1_N  92 segvilsmvFldpgykeednpiialleqdrrgkteltlyewdlglnlvrki 142
                 ++g+il++ Fl p+ + +d + i+ll++++ g+t+++lyewd++l+l+ ++
  KKY23613.1 237 TDGIILQVNFLLPPPDRPD-SAILLLLVSKGGSTRIVLYEWDTKLGLRHNN 286
                 ***************8888.9999999******************976654 PP

  == domain 2  score: 61.2 bits;  conditional E-value: 3.9e-20
      MMS1_N 312 segqdqiytcsGagk.rgsLrelRsGieveela.vseepgspitgvWtlklssedeyddylvlSfvneTlvlsid..gdgeveevte.ds.glllsvpT 404
                 +  ++++++csG+g+ +g++ elR+G+e+++++ +++e+g +++++W+l+      ++ +l+ + +  +  l id  +  e+e +++ ++ g++ls++T
  KKY23613.1 334 KHPKARLFACSGRGEgYGAVAELRHGLEAKIGLiIDQEDGISMNNIWILPD--FHRNQITLLAAHPLYSTALTIDaaS-LEIEVLEDgSEyGFSLSSTT 429
                 56789********9758*********************************3..234679***************9743.399999988889******** PP

      MMS1_N 405 LaagnlgdgslvQVtpngirliradkrvsewkppn.gksiiaaaan..geqllvalsgre 461
                 +aag l+  +++QVt + i+++   ++v   +  + g++i+ a +   g++ + ++ ++e
  KKY23613.1 430 VAAGFLQPSTFCQVTRSDIIVCLLAPNVVYHQRFGiGERISFAKLTtaGHLPVAITVSQE 489
                 *******************88777774443344443344444433321444444444455 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.0   5.1e-36   9.2e-33       5     192 ..    1660    1869 ..    1657    1871 .. 0.84

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 5.1e-36
                  EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEE CS
    GTP_EFTU    5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvv 101 
                   ++i+ghvD+GKt L+d++ +++ +  ++g  ++ +      ++E  ++ T  +++   + e k   + +iDtPGH++Fs+  +rg + +++a+lvv
  KKY23613.1 1660 ICCILGHVDTGKTKLLDKIRQTNVQEGEAGGITQ-QIGATYFPTEALKQKTQVVNQDGKF-EFKVPGLLVIDTPGHESFSNLRSRGSSLCNIAILVV 1754
                  69******************99999888777665.6789999999999999988776544.49********************************** PP

                  ETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST...........HHHHHHHHHHHHHHHHHH..........HHHHHHHHHTTT............ CS
    GTP_EFTU  102 daveGvepqteevlrlalkegvpiivfiNKmDrl...........kaelkeiveevkqklsrk..........eeklekygekge............ 165 
                  d+++G epqt e +rl++++++p+iv++NK+Drl           +++l ++ +  + +++++          +                       
  KKY23613.1 1755 DIMHGLEPQTLESMRLLRDRKTPFIVALNKIDRLygwkqianngfQESLAMQSKGTQAEFRDRlektklafaeQ----------Gfnselyyenksm 1841
                  *************************************9999888877777777777777766644443333330..........1345566666778 PP

                  .TTEEEEEEBTTTTBTHHHHHHHHHHHS CS
    GTP_EFTU  166 .kevpvvfgSalkgegvktllealvell 192 
                   + v++v++Sa +geg+ ++l+ l +l+
  KKY23613.1 1842 aRYVSLVPTSAHTGEGIPDMLKLLLTLT 1869
                  89******************99998765 PP

>> IF-2  Translation-initiation factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.1   3.5e-22   6.2e-19       2     104 ..    1995    2096 ..    1994    2097 .. 0.89

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 3.5e-22
                  CCHHHCCCSCSSCCEEEEEESSHHHHHHHHHHHHCTT.SSTEEEECEEEESSB-HHHHHHHHH....ST..EEEEEESSSCTHHHHHCCCCCTSEEE CS
        IF-2    2 eelfeeikeegkelnviikaDvqGsleAlkeaLekleseevkvkvihsgvGaitesDvelasa....sn..aiiigFnvkvskkakklaekegvkir 92  
                  e+l+++++  +++ +v ++a++ GsleAl e+L+       k++v + ++G++ ++Dv++a +    ++  a++++F+vkv+k+a++ a++ gvki+
  KKY23613.1 1995 ENLLSKVS--KDQRGVSVQASTLGSLEALLEFLRVS-----KIPVANISIGPVYKRDVMMAGTmlekAKeyAVMLCFDVKVDKDAQAYADDVGVKIF 2084
                  56667777..35779*******************97.....7*******************7766541157************************** PP

                  EESSHHHHHHHH CS
        IF-2   93 lynvIYkliddv 104 
                  ++++IY+l+dd+
  KKY23613.1 2085 TADIIYHLFDDF 2096
                  **********97 PP

>> GTP_EFTU_D4  Elongation factor Tu domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.1   2.7e-11   4.9e-08       9      86 .]    2123    2213 ..    2119    2213 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 2.7e-11
                   EEEEEETCCCEEEEEEEEEEEEETT-EEEE..T...TE.....EEEEEEEEEETTEEESEEETT-.EEEEEEESS-...TTTS--TT-EEE CS
  GTP_EFTU_D4    9 pgvvfrrsdpaivGvevlgGvikpgvklik..e...dGr....evGeilqiqdkgkkleeakaGq.evaisiegki...vGrqikegdily 86  
                   p  vf ++dp+++Gv+v++G++k   ++    +   +G     ++G+i++i++ +k++++ k+Gq +vai ieg+     Grq++e ++ly
   KKY23613.1 2123 PVAVFNKKDPIVMGVDVVEGQLKLLTPVAAvrNnpvTGVkeviNLGRISSIERDHKAIQVCKKGQpSVAIKIEGPNqplYGRQLDETETLY 2213
                   5689*****************997777654112122342222268*******************967******9744459********998 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       4.7   8.4e+03      14      47 ..    1673    1707 ..    1663    1717 .. 0.61
   2 !   32.9   0.0   3.5e-11   6.3e-08       1      72 [.    1897    1973 ..    1897    1975 .. 0.95
   3 ?   -0.2   0.1      0.78   1.4e+03       8      47 ..    2139    2182 ..    2134    2200 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.7
                   ETTEEEEEECTCTTSEE...EEEEEEEEEEETEEESE CS
  GTP_EFTU_D2   14 kkGdevrilgndtskke...ivtrissletfhedede 47  
                   k  d++r     +++ e   i+ +i++++ + e +++
   KKY23613.1 1673 KLLDKIRQ--TNVQEGEaggITQQIGATYFPTEALKQ 1707
                   44455555..444333366788888888888877766 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 3.5e-11
                   EEEEEEEEEESEEETTEEEEEEC.TCTTSEEEEEEEEEEEEETEEESEE..........ETTSEEEEEEEESSCCSGSSTTCE CS
  GTP_EFTU_D2    1 GtvalgrvysGtlkkGdevrilg.ndtskkeivtrissletfhededea..........vaganaGvivaikgledaiivGdt 72  
                   Gt++++++ +G+l++Gd+++++g n+     i t i++l+t+ ++++e+          ++ a+ G+++a+ +le a i+G+ 
   KKY23613.1 1897 GTTIDVVLSNGVLREGDRIVLCGlNG----AICTNIRALLTP-APLKELrlksqyvhnkEVKAAMGIKIAANDLEGA-IAGSR 1973
                   9**********************997....699*********.99*******************************8.99975 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.78
                   EEESEEETTEEEEEEC.TCTTSEE...EEEEEEEEEEETEEESE CS
  GTP_EFTU_D2    8 vysGtlkkGdevrilg.ndtskke...ivtrissletfhedede 47  
                   v++G+lk    v  ++ n++ + +    ++riss+e+ h+  + 
   KKY23613.1 2139 VVEGQLKLLTPVAAVRnNPVTGVKeviNLGRISSIERDHKAIQV 2182
                   66666666666655555554333358999********9996655 PP

>> CPSF_A  CPSF A subunit region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   9.7e-10   1.7e-06      26     318 ..     806    1085 ..     799    1089 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 9.7e-10
                  EEEEEE--B-SSTTT---B--EEEEEEE---SSS--E.EEEEEEEEEE-SS--EEEE.EEEEEEEES----EEEETTE.EEEE-SSEEEEEEE-TTS CS
      CPSF_A   26 vlsvksvelessettkekkellvVGtafnlgedpaarsGrilvfeiievpetnrkLk.lvhkeevkgavtalaefqGr.llvgvgqkvrvydlgedk 120 
                  ++++   + +   t++++  ++v+Gt++ +++ +++  Gr++  + +  p+   k k + + +  +++v++la f +  l++g+g+++ +  l+  +
  KKY23613.1  806 ITCITHWKPK---TKDKTYAMIVIGTSVERSDPLSCD-GRVIFATADGGPQ-GTKVKhKRTYKFADKPVYSLAAFGDNsLVIGLGESLLLQSLDFAS 897 
                  5555555533...3346788**************999.**98766666555.5555514555666999*******6655***************999 PP

                  .-EEEEEEEE-SS-EEEEEEETTEEEEEESSS-EEEEEE-SSS--EEEEEEESS---EEEEEEE--SSSEEEEEETTSEEEEEE--TTSGGGTTTT. CS
      CPSF_A  121 .tLlrkafldtqlyvvslkvlgnriivgDlmkSvtfveydeenyklilfardtqkrwvtaaeflvdgedtvlvaDkfgnlfvlrydpeasessdgdp 216 
                      rka+++ +  ++ ++v  + ++v  +++S+ ++     ++  + +a d q+r  ++ ++l +g   vl++ + g   v+ ++       d   
  KKY23613.1  898 rRWQRKAEYQLPSPALHITVAAGQVLVTTARHSLLCFAIVD-DH-WTRVANDQQARTGISHAVLANG--PVLATLSAGGGAVVGLER------DSPG 984 
                  89*******************************98776655.44.599****************666..566666666666666663......2344 PP

                  EEEEEEEEE-SS----E...EEEE.SSS--S.-EEEEEE-TTS-EEEEEE.--HHHHHHHHHHHHHHHHHS-.......-SSS--HHHHS---..-- CS
      CPSF_A  217 rleeraefhlgeivtslrkgslvpgeaesss.spqllyatldGsigllvPliseeeyrrlqaLqqqLrkelk.......hlgGldhrafRsyyspks 305 
                  rl+   e hl + vt+l + s     ++ +    +l+ +t+dG +++++  +s  e r+l+ +q+ L ++ +         +  + +  Rs  +p  
  KKY23613.1  985 RLRPVFEAHLSHNVTRLSNAS---DRSSLPYsHECLFGSTADGVVYHFTK-LSNIEWRLLYFVQS-LHNQAQgsrtrwpASLNKHGLLERSSLRP-- 1074
                  8****************3333...3233333366788899******9999.99999999999885.66666555555445555555566777777.. PP

                  --.---EEHHHHH CS
      CPSF_A  306 eevkgviDgdlle 318 
                    ++  iDgd+l 
  KKY23613.1 1075 --SEKHIDGDFLD 1085
                  ..77778887776 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.7e-08     3e-05       2     114 .]    1661    1784 ..    1660    1784 .. 0.76
   2 ?   -3.3   0.0         5     9e+03      30      84 ..    1896    1978 ..    1888    2003 .. 0.46
   3 ?   -3.9   0.0       8.1   1.5e+04      75     101 ..    2085    2107 ..    2074    2121 .. 0.57

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.7e-08
                  EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE....ETTEE.................EEEEECGGCSSHHHHHHHHHHHHHHHHC.T CS
    MMR_HSR1    2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk....lkgke.................ielvDtpGliegaseekglgkaflalee.a 76  
                  ++i+G+  +GK+ L+ ++ +++++ ++  g T++i    +     +   +                 + ++DtpG  e      ++++   +  + +
  KKY23613.1 1661 CCILGHVDTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPtealK---QktqvvnqdgkfefkvpgLLVIDTPG-HE------SFSNLRSRGSSlC 1747
                  689***************9988888888888888855554422321...134566667777777777********.54......3333333333348 PP

                  SEEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1   77 dlillvvdaseeklkpldeeleelleeakkplilvlnk 114 
                  ++++lvvd+  ++l+p+  e  +ll+++k p+i++lnk
  KKY23613.1 1748 NIAILVVDIM-HGLEPQTLESMRLLRDRKTPFIVALNK 1784
                  9*******99.7799999999999999**********8 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5
                  TTSSSSEEEEEEEETT.EEEEEEECGGC.......................SSHHHHHHHHHHHHHH..HHC..TSEEEEEEE CS
    MMR_HSR1   30 pgtTrdinegrvklkg.keielvDtpGl.......................iegaseekglgkafla..lee..adlillvvd 84  
                   gtT+d++  +  l++ ++i+l+ + G                        +++++ +  +g +++a  le   a   llvv+
  KKY23613.1 1896 LGTTIDVVLSNGVLREgDRIVLCGLNGAictniralltpaplkelrlksqyVHNKEVKAAMGIKIAAndLEGaiAGSRLLVVS 1978
                  57888876665543333777777777753444444444444333333333222222233223222221122233455555555 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 8.1
                  CTSEEEEEEETTTTCSHHHHHHHHHHH CS
    MMR_HSR1   75 eadlillvvdaseeklkpldeeleell 101 
                   ad+i +++d  ++   ++  +l e +
  KKY23613.1 2085 TADIIYHLFDDFTN---HM-AKLLEQK 2107
                  47999999994422...22.2222222 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   6.4e-07    0.0011       3     119 ..    1662    1786 ..    1661    1787 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 6.4e-07
                  EEESSTTSSHHHHHHCHCT-CCC-EE....ETTTTEEEEEEECGGSGGCT.TBTTTTCEE...EEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHH CS
         Roc    3 vlvGdsgvGKtsllkrfvedkfseke....kstigvdfltkevtkikgve.ndkkvkkvk...lniWDtaGqerfrslhplylreaalailvydsrs 91  
                  +++G   +GKt+ll+++ + +++e e    ++ ig++++ +e+ k k+   n++ + ++k   l + Dt G+e f++l++   +  ++ailv+d  +
  KKY23613.1 1662 CILGHVDTGKTKLLDKIRQTNVQEGEaggiTQQIGATYFPTEALKQKTQVvNQDGKFEFKvpgLLVIDTPGHESFSNLRSRGSSLCNIAILVVDIMH 1758
                  699*******************988633336899999998887665533313332222331225899***************************765 PP

                  HHCHHHHHHHHHHHCS.SS-EEEEEE-TT CS
         Roc   92 senlkeWlkelkkvag.kspvilvgnkiD 119 
                    +  + l++++  ++ k+p+i+  nkiD
  KKY23613.1 1759 GLEP-QTLESMRLLRDrKTPFIVALNKID 1786
                  4333.446666666552668999999999 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.5e-05     0.081      64     195 ..    1694    1825 ..    1673    1871 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.5e-05
  ATP_bind_1   64 pngalvvaleflresldwldeeleke.ed.dyllfDtPGQielfthseslakiveeLesefalvvvyLvDsqrltdptkfisgllsalsamlrlelP 158 
                  + ga+ +  e l+++ + ++++ + e +   +l++DtPG   + ++++ ++        +   +++ +vD     +p ++ s+     + +   ++P
  KKY23613.1 1694 QIGATYFPTEALKQKTQVVNQDGKFEfKVpGLLVIDTPGHESFSNLRSRGS--------SLCNIAILVVDIMHGLEPQTLESM-----RLLRDRKTP 1777
                  5578888889999998767666544433358********************........666788899999988888887777.....77889**** PP

  ATP_bind_1  159 hvvvlnkfDllkeklekeleffedvealslllekee...........e 195 
                  ++v+lnk+D l   ++ + + f++  a++   ++ e            
  KKY23613.1 1778 FIVALNKIDRLYGWKQIANNGFQESLAMQSKGTQAEfrdrlektklaF 1825
                  *********998667777777777666666665555555554444331 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.4   0.00057         1      60     164 ..    1619    1736 ..    1588    1739 .. 0.67
   2 ?   -2.3   0.0         2   3.6e+03      21      60 ..    1752    1789 ..    1745    1814 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00057
                   -HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT.........-----S--------------SEEE CS
  RsgA_GTPase   60 eeeeeleelkeelealgyevllvsaktkegleelkellkdktsvlvGqSGvGKStLinallpe.........lelktgevseklgrGkhTTtavel 146 
                   +ee +++e +++ ++++ +    +a++++ +++ k++l++ +++++G+   GK+ L+++++++          ++++g++   ++  k  T+ v+ 
   KKY23613.1 1619 DEEVTATERAAAQRKAEAAARREKAHQEALAARSKDNLRSPICCILGHVDTGKTKLLDKIRQTnvqegeaggITQQIGATYFPTEALKQKTQVVNQ 1714
                   3333566666777777777777777777888888999************************98576666666344444443333333333333322 PP

                   .....EEETTTEEEESS-SSSS- CS
  RsgA_GTPase  147 .....lelaegglliDtPGfrel 164 
                        ++++ g l+iDtPG +++
   KKY23613.1 1715 dgkfeFKVP-GLLVIDTPGHESF 1736
                   222114455.8889999998776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2
                   EEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG-- CS
  RsgA_GTPase   21 ivvslkepelslnlldrfLvlaeekgiepvivlnKiDlle 60  
                   +vv +  + l++++l+  + l+ +++ + +++lnKiD l 
   KKY23613.1 1752 LVVDIM-HGLEPQTLES-MRLLRDRKTPFIVALNKIDRLY 1789
                   555555.5666666664.45677889999********765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2485  (0.138602); expected 358.6 (0.02)
Passed bias filter:                      683  (0.0380947); expected 358.6 (0.02)
Passed Vit filter:                       263  (0.014669); expected 17.9 (0.001)
Passed Fwd filter:                        96  (0.00535445); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 2.98u 0.41s 00:00:03.39 Elapsed: 00:00:00.72
# Mc/sec: 9425.60
//
Query:       KKY23614.1  [L=535]
Description: putative cytochrome p450 61 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-52  177.2   0.0    6.8e-52  176.8   0.0    1.1  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.8   0.0   3.8e-56   6.8e-52       7     435 ..      71     501 ..      65     517 .. 0.84

  Alignments for each domain:
  == domain 1  score: 176.8 bits;  conditional E-value: 3.8e-56
                 HHCCHCHHHHTTTCCHHHHHHHHHHHH..-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHH CS
        p450   7 lplvgnllqlgrkeelhevlrklqkky..gpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrflt 103
                 +p++g +l+       + v++k+q k   g++  + + +k vv+ s+ ++ +++++  +     + ++ ++++++k  +  + +f +g+ +   R+ l+
  KKY23614.1  71 VPFMGPFLEAV-----YPVFTKYQAKWasGELSCVSVFHKFVVIASTRDMSRKIFNSPA-----YVRPCVVDIATKLLRPDNWVFLDGKAHVDYRKGLN 159
                 55666666554.....67899999998889***************************94.....455678888889*********************** PP

                 HHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHH...HHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHH CS
        p450 104 ptltsfgkl.sleelveeeaedlveklrkkagesselditellska...aldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpll 198
                   +t + +l  + +  ee+ ++  +++   ++++   ++ +++sk+   ++ v++++++g+ ++   d    + +k+ +++++++++   +l++++ +l
  KKY23614.1 160 GLFTRQ-ALnIYLPGQEEVYDKYFAEFVAITEKA-GGNPEPWMSKFrelMTAVSCRTFVGHYMN---D---ATVKKVADDYFNITAA--LDLVNFPIIL 248
                 ******.888899999999999888888888888.588888887754449***********755...3...4788999999888854..4577777799 PP

                 TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC...........SCSSCSHHHHHHHHC.....TTCTCT..SSSSHHHHHHHHHHHHHHHHHHHH CS
        p450 199 kylptkllrklkeavkklkdlldklieerretldsa...........kksrrdfldalllak.....kekkge..sklsdeelaatvlellfaGvdTts 279
                  +  t++++k+ ++  +++++++   + + +                + ++   ++  l +      +ek  +   +++d e+a+t++++lfa++d ts
  KKY23614.1 249 PFTRTWYGKKAADM--VIAEFAKCAAKSKVRMAAGGqvncildawvkQMQDSARYNEKLAKGipvdpSEKPPQvlREFTDLEIAMTLMTFLFASQDATS 345
                 98899999998877..9999998888877777777766666666655333344444444444898776666669************************* PP

                 HHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTT..T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEE.TTEEE-TT-EEEEEHHHHHT-TT CS
        p450 280 stlswaLyeLaknPevqeklreEidevlgdkr..eptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvi.rgylipkGtevivnlyalhrdpe 375
                 s+ +w +  +a++P++ +k+reE  ++lg++r  + + d+l+++ y++av+kEtLR++p+v   +p ev+kd ++ ++++++kG++v+++++   +dp+
  KKY23614.1 346 SAATWLFQIMAQRPDILDKVREENIRTLGGDRnnRYDLDMLESMVYTRAVVKETLRYRPPVI-MVPYEVKKDFQVtPDVKLRKGQMVVPSVWPATHDPD 443
                 ****************************66675788889***********************.*********988356********************* PP

                 TSSSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEE CS
        p450 376 vfpnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFev 435
                  + nP++Fd +R+   ++  +++   +l FG+Gp+ C+G++ A+++l l++++   + ++
  KKY23614.1 444 AYTNPDTFDVDRWITGDA--EKQAKNWLVFGTGPHYCLGQQYAQLNLALMIGKASVHLDW 501
                 ****************98..59***************************99876555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:00.55
# Mc/sec: 2928.24
//
Query:       KKY23685.1  [L=546]
Description: putative ltype i [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-49  168.6   0.0    1.6e-49  168.1   0.0    1.3  1  Asparaginase    Asparaginase, N-terminal
    4.3e-27   94.6   0.0    1.3e-26   93.0   0.0    1.9  1  Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
    4.1e-10   39.6   0.6    6.6e-06   26.3   0.1    3.0  3  Ank             Ankyrin repeat
    2.2e-09   37.4   0.3    3.3e-08   33.6   0.0    2.5  2  Ank_5           Ankyrin repeats (many copies)
      1e-08   35.6   0.1    0.00015   22.3   0.0    2.4  2  Ank_2           Ankyrin repeats (3 copies)
    3.4e-07   30.1   4.3     0.0036   17.7   0.1    3.8  4  Ank_3           Ankyrin repeat
     0.0018   18.8   0.6      0.061   13.9   0.1    3.2  3  Ank_4           Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Asparaginase  Asparaginase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.1   0.0   6.3e-53   1.6e-49      46     189 ..      54     208 ..       1     210 [. 0.85

  Alignments for each domain:
  == domain 1  score: 168.1 bits;  conditional E-value: 6.3e-53
                   E............EEEEEE-GGG--HHHHHHHHHHHHHHCCT-SEEEEE--STTHHHHHHHHHHHEES.SSEEEEE--SS-TTSTT-SHHHHHHHHH CS
  Asparaginase  46 s............eqlanidSsnmtpadwlklaeaieealeeydgfVvlhGTDTlaytAsaLslmlknldkpvvltGsqrplselrsDgpeNlldAl 130
                   +            e+   +dSs+++   w+++a +i+++++ +d+fVvlhGTD+layt saLs+ml+nl+kpvv+tGsq+p+se ++D+ eNl+d+l
    KKY23685.1  54 VstygkqvryavyEFPDLLDSSSIDAMGWAEIAGTIYRNYTLFDAFVVLHGTDSLAYTCSALSFMLQNLGKPVVFTGSQVPMSERKNDALENLIDSL 150
                   044455555555589999******************************************************************************* PP

                   HHHHCGGTTSECEEEETTEEEETTTEEE-BSSSSS-EEETTT--SEEEETTEEEESEEE CS
  Asparaginase 131 lvaasseriagvlvvfngkllranrvtKvhtssldaFespnlgplaevegskvkvnkel 189
                    +a++    a+v+++fn k++r+nr+tK+++++++aF spn++pla+++  ++ v++++
    KKY23685.1 151 DIAGHF-FLAEVVLCFNSKVFRGNRSTKISANAFEAFASPNMPPLATITAMDTVVQWDR 208
                   ******.9****************************************99999999875 PP

>> Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.0   5.2e-30   1.3e-26       1     112 [.     228     344 ..     228     346 .. 0.95

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 5.2e-30
                     -EEEEE--TT--HHHHHHHHHT.T--EEEEEEBTTTB--H....HHHHHHHHHHTTT-EEEEEESSSBS-----H.....HHHHHTEEE-TT--H CS
  Asparaginase_C   1 rVvvlklhpgmdtkvlkallkk.gakGvvlegtGvGnlps....allealkeakargivvvatsqcpsgsvsnseyeagkelerlgvisaddmtp 90 
                     +V++l+++pg+++++++a+l++ g++G+vle++G+Gn+ps    a+ +++  a++rgiv+v++sqc+sgsv++  y+ g  l rlgv+ ++dmt+
      KKY23685.1 228 HVACLRIFPGIKPAMVDAVLRTdGLRGLVLETFGAGNAPSgvdnAMSRVFTAAISRGIVIVNISQCLSGSVEPI-YGPGVILGRLGVVPGGDMTT 321
                     59*******************99****************99999*****************************9.89****************** PP

                     HHHHHHHHHHCTT--.-HHHHHH CS
  Asparaginase_C  91 eaarikLmlllgkgl.dpaevrk 112
                     eaa +kL++ll+  + +p+ vr+
      KKY23685.1 322 EAALTKLAYLLALPDaTPDSVRR 344
                     ***********986658887776 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1   2.6e-09   6.6e-06       2      31 ..     438     468 ..     437     469 .. 0.95
   2 !   10.4   0.1   0.00028      0.72       2      29 ..     491     519 ..     490     521 .. 0.86
   3 ?   -3.2   0.0       5.6   1.4e+04       3       9 ..     523     529 ..     523     535 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2.6e-09
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 GnTPLHlAat+ +++i++ +L  GA++++++
  KKY23685.1 438 GNTPLHLAATCPNLEILRHFLmEGASVHIRN 468
                 9*****************99989****9998 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00028
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlna 29 
                 G+TPL lAa+ g  + i+lL  +GA l+a
  KKY23685.1 491 GRTPLFLAANAGLRDHIELLRrSGAHLHA 519
                 99*******888889***77688999987 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 5.6
                 BBHHHHH CS
         Ank   3 nTPLHlA 9  
                 +T+ +lA
  KKY23685.1 523 DTARMLA 529
                 59****6 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.3e-11   3.3e-08       4      49 ..     425     471 ..     423     474 .. 0.92
   2 ?    1.2   0.1      0.19     5e+02      14      34 ..     489     509 ..     481     529 .. 0.73

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.3e-11
       Ank_5   4 hg.padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG 49 
                  + +  +n +d  gntpLh+Aa + +++++r +l++ga+  ++++ G
  KKY23685.1 425 DDgSFILNKQDYSGNTPLHLAATCPNLEILRHFLMEGASVHIRNFTG 471
                 4558889*************************************998 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.19
       Ank_5  14 gggntpLhvAakygaadvvrl 34 
                 +gg tpL +Aa++g  d ++l
  KKY23685.1 489 QGGRTPLFLAANAGLRDHIEL 509
                 4677********998776555 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   5.7e-08   0.00015      25      83 .]     396     468 ..     381     468 .. 0.78
   2 !   10.8   0.0   0.00023      0.58      51      80 ..     489     518 ..     475     528 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 5.7e-08
       Ank_2  25 ngktaLhyAakngnleivklLle....h..........adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 +++ aL yA+ +g+l+ v  +l+    h          +d++g+tpLh+Aa + +lei++ +l  ga++++++
  KKY23685.1 396 TNLAALAYAIASGSLNRVLNILQisqsHdddgsfilnkQDYSGNTPLHLAATCPNLEILRHFLMEGASVHIRN 468
                 457899999999999877555544444366777786667799*********99899****7776899999875 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00023
       Ank_2  51 ndgrtpLhyAarsghleivklLlekgadin 80 
                 + grtpL++Aa  g  + ++lL  +ga+++
  KKY23685.1 489 QGGRTPLFLAANAGLRDHIELLRRSGAHLH 518
                 569999999998899999999998898876 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.8   1.7e+04       7      20 ..     228     245 ..     228     250 .. 0.62
   2 ?   -0.9   0.1       1.5   3.9e+03       5      23 ..     400     418 ..     397     421 .. 0.83
   3 !   17.7   0.1   1.4e-06    0.0036       2      31 .]     438     466 ..     437     466 .. 0.93
   4 !   11.5   0.1   0.00015      0.38       2      30 ..     491     518 ..     490     519 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.8
       Ank_3   7 hlAarsgnl....eivkf 20 
                 h+A++ + +    ++v++
  KKY23685.1 228 HVACLRIFPgikpAMVDA 245
                 889988877443235665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.5
       Ank_3   5 pLhlAarsgnleivkfLle 23 
                 +L +A+ sg+l++v  +l+
  KKY23685.1 400 ALAYAIASGSLNRVLNILQ 418
                 6889******998887776 PP

  == domain 3  score: 17.7 bits;  conditional E-value: 1.4e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvna 31 
                 G+tpLhlAa + nlei++ +l   ga v++
  KKY23685.1 438 GNTPLHLAATCPNLEILRHFLM-EGASVHI 466
                 9*********************.7999875 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.00015
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+tpL+lAa +g  + +++L +  ga ++
  KKY23685.1 491 GRTPLFLAANAGLRDHIELLRR-SGAHLH 518
                 9**************9**9988.788776 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0         2     5e+03      21      45 ..     183     206 ..     180     209 .. 0.82
   2 !   13.9   0.1   2.4e-05     0.061      26      52 ..     424     455 ..     397     458 .. 0.67
   3 ?    0.9   0.0      0.29   7.4e+02       2      19 ..     492     512 ..     491     538 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2
       Ank_4  21 lekgadinaqdnrsGetalhiAakr 45 
                 +e  a++n+  +    ta++ ++++
  KKY23685.1 183 FEAFASPNMP-PLATITAMDTVVQW 206
                 5678899**8.99999999988876 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.4e-05
       Ank_4  26 d......inaqdnrsGetalhiAakrgnveilk 52 
                 d      +n+q + sG+t+lh Aa   n+eil+
  KKY23685.1 424 DddgsfiLNKQ-DYSGNTPLHLAATCPNLEILR 455
                 35566668999.************998888886 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.29
       Ank_4   2 ltaLhyaai...sgrlelvrl 19 
                 +t+L+ aa+     ++el+r+
  KKY23685.1 492 RTPLFLAANaglRDHIELLRR 512
                 788888888777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4029.29
//
Query:       KKY23686.1  [L=480]
Description: putative wsc domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-85  286.2   2.4    2.5e-85  286.2   2.4    1.5  2  DUF1996   Domain of unknown function (DUF1996)
  ------ inclusion threshold ------
       0.27   11.0   5.6       0.51   10.1   5.6    1.4  1  FAM53     Family of FAM53


Domain annotation for each model (and alignments):
>> DUF1996  Domain of unknown function (DUF1996)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.2   2.4   2.8e-89   2.5e-85       1     233 []      37     282 ..      37     282 .. 0.97
   2 ?   -3.1   0.2      0.72   6.5e+03      32      66 ..     408     443 ..     392     457 .. 0.47

  Alignments for each domain:
  == domain 1  score: 286.2 bits;  conditional E-value: 2.8e-89
     DUF1996   1 DPivspgevsshvHtivGgsafnasltyeelrkskctscevkeDkSnYWvptLYfkkengsferveqkggllvYYllekkkekkvtafpkgfrmiaGdp 99 
                 DP+v+pg +++h Hti+Gg+ f++s+t  +l++s+ctsc v++DkS+YW+p+LYf++++g+f++ve++gg+l+YYll+    +++tafp+gf+mi+Gd+
  KKY23686.1  37 DPLVNPGVPADHSHTIFGGQDFSFSTTPYDLNSSDCTSCIVTQDKSSYWTPSLYFQSDDGTFTEVENNGGMLAYYLLYG---DNITAFPQGFSMISGDN 132
                 9*******************************************************99*******************54...68*************** PP

     DUF1996 100 tlr....................ekslaqkaisftcleseekeeaeeetkelpkk..tkkkcasglraeilfpsCwdgknldspdhkshvaypskvees 176
                 ++r                    +++laqkai ++cl++ +++ea+ +++++p+k  ++++c++g+r+e++fpsCw+gk++ s+dhkshva+p+ v+  
  KKY23686.1 133 NRRsfdlpvpdppksewtgsavtQSALAQKAIGWNCLNYGKTAEASLYRHTMPTKeyMDANCTDGMRIELMFPSCWNGKDVSSSDHKSHVAFPDLVM-- 229
                 **********************9999999************99999********99999**********************************9998.. PP

     DUF1996 177 egkCpeshpvrlpqlfyeviwdtekfnkkedgksqpfvlsngdktGyglHaDFinGW 233
                 +g+Cp+++++rlp+lfye+iwdt +f+    gks++fvlsngd+tG+g+H+DF++GW
  KKY23686.1 230 TGTCPDGYETRLPSLFYETIWDTYAFK----GKSGQFVLSNGDTTGCGYHGDFMMGW 282
                 **************************8....66899********************* PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.72
     DUF1996  32 rkskctscevkeDkSn..YWvptLYfkkengs.ferve 66 
                  +++ ts+  ++D  +      ++Y+  +ng+ ++ v 
  KKY23686.1 408 SAAAITSAPASTDDAAdqILYTSIYT--SNGEeVHMVM 443
                 33445555555554431122234554..3454355554 PP

>> FAM53  Family of FAM53
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.6   5.7e-05      0.51     134     217 ..     340     423 ..     337     473 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 5.7e-05
       FAM53 134 PsgSkvWTpvekr.rCnsGGsssvqrvssllflqagsaslqrsssfslalssdslelptspveprpgsassslvdsssessspas 217
                 P++ kv+T+v+   + +sGGs sv+ ++s      g+++   sss s+     ++ ++ts+ +++++s+s+++++s++ s+  a 
  KKY23686.1 340 PGNVKVYTAVDATtSASSGGSVSVSYATSASSSDLGYSAAPTSSSESYGGIFAQV-VSTSASSTLTTSTSAAAITSAPASTDDAA 423
                 8899******8651678999999999999999999*****999999999998888.47888888888888888887766554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3197.72
//
Query:       KKY23687.1  [L=739]
Description: putative nadh-ubiquinone oxidoreductase 78 kda subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      9e-73  245.7   0.0    1.1e-70  238.8   0.0    2.3  1  Molybdopterin    Molybdopterin oxidoreductase
      8e-21   73.9   0.2    1.7e-20   72.8   0.2    1.6  1  Fer2_4           2Fe-2S iron-sulfur cluster binding domain
    6.9e-19   68.3   0.0    2.3e-18   66.6   0.0    1.9  1  NADH_dhqG_C      NADH-ubiquinone oxidoreductase subunit G, C-
    2.6e-17   62.1   0.2    2.6e-17   62.1   0.2    1.9  2  NADH-G_4Fe-4S_3  NADH-ubiquinone oxidoreductase-G iron-sulfur
    4.5e-09   36.1   0.6    4.5e-09   36.1   0.6    2.1  2  Fer2             2Fe-2S iron-sulfur cluster binding domain
  ------ inclusion threshold ------
       0.11   11.7   0.0       0.21   10.8   0.0    1.3  1  Lyx_isomer       D-lyxose isomerase


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.8   0.0   3.8e-74   1.1e-70       1     431 [.     306     631 ..     306     632 .. 0.95

  Alignments for each domain:
  == domain 1  score: 238.8 bits;  conditional E-value: 3.8e-74
                    B--S-EEECTTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEE.EEBTSSCSHHHHHHHHHHHHHTT-EEE-BEECCGGGTTHHHHCHHCCC CS
  Molybdopterin   1 RlkyPmvRkqargeGkFvrvsWdeAleliaaslkytikkygpdrvag.fssgplmsmeslaslkkllsllggknlsfydwyadlppasaqqtigsd 95 
                    Rl++P++R   r ++kF ++sW++Al++i a+++++  k ++    + +++g l+++esl+++k+l++++g++nl++ + ++  p a+     g d
     KKY23687.1 306 RLTTPLIR---R-DDKFFPASWEQALNEIGAAYQKVAPKDNE----FkAIAGHLVETESLVAMKDLANKIGSENLALDQVGGSDPIAH-----GID 388
                    9*******...9.***********************999999....88*************************************998.....9** PP

                    CCTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC-EEEEECSSB-HCGGGCSEEEEEHTTTHHHHHHHHHHHHHHCCCCTCHHH CS
  Molybdopterin  96 srsnyessnpledlensdliilwGsNvreerpilnarirkaalkkkakvivigpryaellkfadewlaikpgtdaalalamghvilqelkvdkefl 191
                    srsny+++++++++e +d+i+++GsN+r+e+ +lnarirk++l++++ ++ +g++++  ++f +e+l+i++++ +++ la++  + ++l  +k   
     KKY23687.1 389 SRSNYLFNSKIYGVEGADAILIVGSNPRHEAAVLNARIRKQYLRSDLDIGLVGEEFD--STFGYEHLGIDAASVKKV-LAGE--FGKKLAAAK--- 476
                    *********************************************************..99****************.8888..*********... PP

                    HHHEECHHHCCCCCCCEECCSHHHHHHCCHHHHHHHHHHHHHHTSSEEEEECHHHHTSTTHHHHHHHHHHHHHHCTHCSSTTCEEEEESSCTTHHH CS
  Molybdopterin 192 rkytygkeetdmpllvtleeetgkkkevvariarelarnaaktagksmiivGaglnhrqdgdaiyravinLallvgnvgqpgGgwahlnGqlilag 287
                                                                 +++iivG  + ++ d +ai++ v  +++          +w+++n   +l++
     KKY23687.1 477 ---------------------------------------------RPIIIVGSAVAEHPDAKAIFESVGAFVDKHASKFI-TPEWNGYN---VLQR 523
                    .............................................****************************8766655.569*****...**** PP

                    CHHHHTCCTTCCCCCCCTTHHHHHCCCTTTCSTSS--ECGGCHHHHHHTTSSSEEEEESH.HHHHSTTSCCCHCHHHCSSEEEEEESCS.SHHHHT CS
  Molybdopterin 288 aaekvgalpvllsvkslkeekikfaaeqpgnlgnfprnlfversnllkssgkkvlyllgnnpevdhadenevekalekldlvvvldgrl.tstaly 382
                    aa+++ga+                      ++g++     v   +++k ++ k+++llg       ade+ +     ++d++v+++g++ +++a++
     KKY23687.1 524 AASRAGAY----------------------EVGFT-----VPSPEVAK-TKAKFVWLLG-------ADEVPE--GEIPKDAYVIYQGHHgDKGAQI 582
                    ********......................77773.....33333444.789999****.......****99..7779****************** PP

                    SSEEEEBE-CCGSEEEEE-TTSEEEEEEESSS-STT-BEHHHHHHHHHH CS
  Molybdopterin 383 aDiiLPaatwyEkedlytndegrfqhlkqavsppgeaksdwkIlkaLak 431
                    aD+iLP+at++Ek+++y+n+egr+q  ++a+s pg a++dwkI++a+++
     KKY23687.1 583 ADVILPGATYTEKHGTYVNTEGRVQVGRAATSLPGAARDDWKIIRAVSE 631
                    ***********************************************98 PP

>> Fer2_4  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.2   5.7e-24   1.7e-20       2      81 ..      33     109 ..      32     110 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 5.7e-24
      Fer2_4   2 rpvtltfDGkevtvpeGdtvasAllangvdvprsckygrprgelcaggeCrnClVevegepn.vracstpvedGlkvetqt 81 
                 ++v+lt+DGk+v+v++G+ +++A+ ++gv++pr c++    ++l   g+Cr ClVeve+ p+ v++c  pv++G++v+t++
  KKY23687.1  33 AEVELTIDGKKVSVEAGSALIQACEKAGVTIPRYCYH----EKLLIAGNCRMCLVEVEKAPKpVASCAWPVQPGMVVKTNS 109
                 689**********************************....9*****************99978***************87 PP

>> NADH_dhqG_C  NADH-ubiquinone oxidoreductase subunit G, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   7.8e-22   2.3e-18       2      51 .]     665     712 ..     663     712 .. 0.95

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 7.8e-22
  NADH_dhqG_C   2 vepasfgkaalvaakagasgklsgaplkspiedFYmTDpISRASaTMAkC 51 
                  ++  s++k++lv++++g+  k+sg+pl++pi+dFY+TD+ISR+S+TMA+C
   KKY23687.1 665 ISTGSLSKVQLVDQNKGS--KASGKPLENPIKDFYFTDSISRSSPTMARC 712
                  5677889***********..8***************************** PP

>> NADH-G_4Fe-4S_3  NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.2   8.6e-21   2.6e-17       1      38 [.     116     153 ..     116     155 .. 0.95
   2 ?   -4.9   1.8         6   1.8e+04      11      20 ..     179     188 ..     178     189 .. 0.70

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 8.6e-21
  NADH-G_4Fe-4S_3   1 RktilellLanHpldCltCdknGnCeLQdlayelgvee 38 
                      R +++e+lL+nHpldC++Cd++G+C+LQd ++++g ++
       KKY23687.1 116 REGVMEFLLSNHPLDCPICDQGGECDLQDQSMRYGADR 153
                      899********************************986 PP

  == domain 2  score: -4.9 bits;  conditional E-value: 6
  NADH-G_4Fe-4S_3  11 nHpldCltCd 20 
                      n +  C+ C 
       KKY23687.1 179 NRCIHCTRCI 188
                      6677888886 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.6   1.5e-12   4.5e-09       2      77 ..      38      99 ..      37     100 .. 0.86
   2 ?   -1.0   0.2      0.58   1.7e+03      19      40 ..     119     140 ..     112     142 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 1.5e-12
                ETTTEEEEEEEETTTHBHHHHHHHTTTTTSTTSSSS......SSSSTTEEEEEESCECTTSSSSTHHHHHTTEEEEGGGSEE CS
        Fer2  2 tidgkevevevadgettlldaaeenggidipysCgg......ggCgtClvevlegevqsdetelegeeldegklrlaCqtiv 77
                tidgk+v+ve+   ++ l +a+e++ g+ ip  C++      g+C++Clvev+            +++    k +++C+ +v
  KKY23687.1 38 TIDGKKVSVEA---GSALIQACEKA-GVTIPRYCYHeklliaGNCRMCLVEVE------------KAP----KPVASCAWPV 99
                89*******99...888******99.***************777******977............565....3678887766 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.58
                 HHHHHHHTTTTTSTTSSSSSS.S CS
        Fer2  19 lldaaeenggidipysCgggg.C 40 
                 +++++ +n+ +d p  C +gg C
  KKY23687.1 119 VMEFLLSNHPLDCP-ICDQGGeC 140
                 79999999999999.9***9999 PP

>> Lyx_isomer  D-lyxose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.1e-05      0.21     133     187 ..      31      86 ..      21      89 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.1e-05
  Lyx_isomer 133 ededvtvsvDGvkktvaageklrlk.pGesitlepglyHkfwaekgkgkvlvgevs 187
                 ++++v++++DG k++v+ag+ l+ + +   +t+ ++ yH+     g+ ++ + ev 
  KKY23687.1  31 RTAEVELTIDGKKVSVEAGSALIQAcEKAGVTIPRYCYHEKLLIAGNCRMCLVEVE 86 
                 6789****************9876614568*********98888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.53
# Mc/sec: 4213.66
//
Query:       KKY23688.1  [L=442]
Description: putative nitrogen metabolic regulation protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-72  241.3   0.0    1.2e-71  241.0   0.0    1.1  1  NmrA            NmrA-like family
    0.00018   21.4   0.0    0.00029   20.8   0.0    1.2  1  NAD_binding_10  NAD(P)H-binding


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.0   0.0   1.3e-75   1.2e-71       1     231 [.       8     243 ..       8     245 .. 0.97

  Alignments for each domain:
  == domain 1  score: 241.0 bits;  conditional E-value: 1.3e-75
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEE.ES-TT.-HHHHHHHHTT-SEEEE---GG.S-HHHHHHHHHHHHHHHS.-S CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelv.kgdld.dkeslvealkgvdvvfsvtgfy.skeiedgkklvdAakeaG.vk 95 
                 I+++++TGrq++s++r++ + g++vra+v+  ++ +a++l+e + +++ +g l  ++++++ ++ g++ +f++t++  ++e+++gk+l+dAak+ G ++
  KKY23688.1   8 IAIVNGTGRQAASLIRVASALGYQVRAQVHSRQGLVAEELAELPGVTLfEGPLTgNNDLINVLFVGAHYAFINTTYLaGDEVAIGKALADAAKRSGsIQ 106
                 89****************************************9766666***6438999****************889********************* PP

                 EEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE..-HHHHHHHHHHH CS
        NmrA  96 hfiySslgddndrsnaeepavphfdsKaeieeyvralgipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavll..daeeDiGafvik 192
                 h+iySs++d++ ++n ++pa+p+++ K+ +e+y+r+lg+p+tfvy+g++++nf+sl+ +l++++++p++ ++++  p++p++ l+  dae+D+G++vi+
  KKY23688.1 107 HYIYSSMPDHS-IHNPNWPALPLWSCKFAVENYIRQLGLPATFVYTGIYNNNFTSLPFPLFCMELRPDG-SFEWRSPFHPDIELPwlDAEHDVGPAVIQ 203
                 ***********.********************************************************9.**************99************* PP

                 HHHH.HHHHTTEEEEE-SEEE-HHHHHHHHHHHHTS-EEE CS
        NmrA 193 ilkd.prklkgkriklagntlsgneivelfekkigktvkY 231
                 i+kd p+ +k +ri+la + l++ ++++lf+++++++v+Y
  KKY23688.1 204 IFKDgPKRWKHHRIALAFELLTPRQVCRLFSRALERPVRY 243
                 **************************************** PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   3.3e-08   0.00029       2     149 ..      13     157 ..      13     162 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 3.3e-08
                     TTSHHHHHHHHHHHHC-T-EEEEEETTHHHC..HHHHCTTTCEEEE--TT-CCHHHHHH.TT-SEEEES-.--TCCHHHHHHHHHHHHHHCT.-- CS
  NAD_binding_10   2 AtGkvGrllvkellargghevtalvRnpekl..aeleaeeglevvegdvtdvedlaeal.kgadaVvsal.ggggkdeegaknivdaakeag.vk 91 
                     +tG+ +  l++ + a  g++v+a v + + l  +el++ +g++++eg +t  +dl ++l  ga   ++++    g++  + k+++daak++g ++
      KKY23688.1  13 GTGRQAASLIRVASAL-GYQVRAQVHSRQGLvaEELAELPGVTLFEGPLTGNNDLINVLfVGAHYAFINTtYLAGDEVAIGKALADAAKRSGsIQ 106
                     699********99999.5*****9988775543788888***********877766665378875555552333334567***********9899 PP

                     EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-CEE-S CS
  NAD_binding_10  92 RfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpggLtde 149
                     ++++ s  +     ++  ++w      + +  k a e+++r+ gl  T+v  g  +++
      KKY23688.1 107 HYIYSSMPDHSI--HN--PNWP---ALPLWSCKFAVENYIRQLGLPATFVYTGIYNNN 157
                     999977766542..22..2332...2367889******************99988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.52
# Mc/sec: 2563.51
//
Query:       KKY23689.1  [L=1192]
Description: putative phosphoribosylformylglycinamidine synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-96  322.3   0.0    2.5e-96  321.7   0.0    1.2  1  GATase_5        CobB/CobQ-like glutamine amidotransferase dom
    2.3e-38  131.8   0.1    1.2e-25   90.5   0.1    2.3  2  AIRS_C          AIR synthase related protein, C-terminal doma
    9.6e-21   74.1   0.0    2.2e-20   72.9   0.0    1.7  1  FGAR-AT_linker  Formylglycinamide ribonucleotide amidotransfe


Domain annotation for each model (and alignments):
>> GATase_5  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.7   0.0  4.2e-100   2.5e-96       1     260 []     918    1191 ..     918    1191 .. 0.94

  Alignments for each domain:
  == domain 1  score: 321.7 bits;  conditional E-value: 4.2e-100
    GATase_5    1 kpkvailreeGvngeyemaaafekaGfeavdvhmsdllegrvslddfqilalpGGfsygDelgsgkgwakslllneklrealekflnredtlaLGiC 97  
                  kp+vailre+Gvng+ ema+af+ +Gf+avdvhm+dl++grvsl+ f +la++GGfsygD+lg+g+gwaks+ll++++r++++kf++r+dt++LG+C
  KKY23689.1  918 KPRVAILREQGVNGQPEMAYAFHVSGFTAVDVHMTDLISGRVSLSTFTGLAACGGFSYGDVLGAGQGWAKSVLLHANTRKEFRKFFERPDTFTLGVC 1014
                  79*********************************************************************************************** PP

    GATase_5   98 nGfqlLvklg.lvpggeieeaeksptltrNksgrfesrlvsvvvsek...spsvflkgmeglslp..vahGeGrfvf.......kseevlkeleang 181 
                  nG+q+L++l  l+p      ++++p ++rN+s+++e+r+++v++s+    +psvfl+gm+ +slp  vahGeGr+ f       ++++++++l++++
  KKY23689.1 1015 NGCQFLTRLAsLIPD----ASSTWPVFERNSSEQYEARVCMVRISDPdpsNPSVFLHGMHNSSLPiaVAHGEGRATFpstpsspPTSTAASNLISSN 1107
                  **************9....79*********************7655323389********9999999**********66555444567889****** PP

    GATase_5  182 qvalrYvde.egkpteeyplNPNgSpegiagitspdGRvlalmpHpervveavqksiipe...eeeee.vspwlrlFenavkyv 260 
                  +v+++Yvd+ + +pteeyp+NPNgSp+giag+ s+dGRvlalmpHper+v++   s+ipe   +e+++  +pw rlF +a+++v
  KKY23689.1 1108 LVPIQYVDNtTFNPTEEYPFNPNGSPAGIAGVRSRDGRVLALMPHPERTVMSGIGSYIPEhigKEWDGdAGPWSRLFLSARRWV 1191
                  *********999***********************************************97766776469*************7 PP

>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.1     2e-29   1.2e-25       1     151 [.     271     426 ..     271     430 .. 0.93
   2 !   38.9   0.0   1.5e-13     9e-10      14     146 ..     703     830 ..     696     838 .. 0.77

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 2e-29
                 STTEEEEEEET....SSCTCCHHHHHHHCHHHCTSHTT.TSEHHHHHHHHHHHHHHHHHHHH..HTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECG CS
      AIRS_C   1 kpGdvliltgs....lGlggagtslkrkileeegldds.avqlgdvlleptliyvkralaal..kglvkaahDvTgGGLlgalaemapasgvgaeidld 92 
                 kpG  li++g+    +Glgg + s++  +  + +ld + +vq+g+++  ++ ++v  a+  l  + ++k +hDv++GGL++al+e++++s++ga+++l 
  KKY23689.1 271 KPGSFLIVLGGpamlIGLGGGAASSITSGEGSVELD-FaSVQRGNAEVQRRAQEVINACVSLgpNSPIKFIHDVGAGGLSNALPELVHDSDLGATFELR 368
                 79999*****************77776665555555.45************************************************************ PP

                 THHHHHHHHHHHHHHHCSTTTEEEEEEEHGGHHHHHHHHHHTTCCCEEEEEEEEESSSE CS
      AIRS_C  93 kvpifdelesplemllsensGrllvavppeeadavlaileeeglpeaavIGevtakeel 151
                 +v   d+ +spl++++ e ++r+++av+++  ++++ai+++e++  ++++G++t+ e++
  KKY23689.1 369 EVDNADKGMSPLQIWCCEAQERYVMAVAEDGLNKFRAIAHRERC-GYSIVGRATGNEHG 426
                 ********************************************.6********98876 PP

  == domain 2  score: 38.9 bits;  conditional E-value: 1.5e-13
                 CTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHHHTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECG.THHHHHHHHHHHHHHHCST CS
      AIRS_C  14 lggagtslkrkileeeglddsavqlgdvlleptliyvkralaalkglvkaahDvTgGGLlgalaemapasgvgaeidld.kvpifdelesplemllsen 111
                 lgg++ ++++ ++  ++++     + dv+l +   ++ + + ++ + v a hD ++GGL  +laem++a+++g+ei ld   p  ++    le l+ e+
  KKY23689.1 703 LGGSA-LAQVFGQVGDECP----DIRDVELFKDFFDATQQMQED-NCVLAYHDRSDGGLFTTLAEMMFAGRCGVEIMLDsICPSSQPH-HVLETLFNEE 794
                 67778.6677777777777....5*******************8.**********************************545555554.5677777777 PP

                 TTEEEEEEEHGGHHHHHHHHHHTTC...CCEEEEEEEE CS
      AIRS_C 112 sGrllvavppeeadavlaileeegl...peaavIGevt 146
                  G  ++ v++ +++++++ ++ +g    +    IG+v 
  KKY23689.1 795 LG-AVFQVRKSDENRFRSCFSTCGPpdgL-IHKIGRVS 830
                 77.44556666668888888877653323.66666665 PP

>> FGAR-AT_linker  Formylglycinamide ribonucleotide amidotransferase linker domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.0   3.6e-24   2.2e-20       1      50 []       4      56 ..       4      56 .. 0.97

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 3.6e-24
  FGAR-AT_linker  1 LeeankelglaLsdeEidylqeaf...eklgrnPtdvElemfaqvwSEHCrHK 50
                    L+ean + glaL+ +E +yl++a+    +lgr PtdvEl+mfaqv+SEHCrHK
      KKY23689.1  4 LREANARFGLALDSSELQYLADAYgkaGALGRSPTDVELFMFAQVNSEHCRHK 56
                    789*********************99978***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.51
# Mc/sec: 6968.89
//
Query:       KKY23690.1  [L=541]
Description: putative mfs multidrug transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-44  151.9  34.2      4e-44  151.0  26.5    2.0  2  MFS_1     Major Facilitator Superfamily
    4.2e-08   32.1   1.8    6.7e-08   31.4   1.8    1.2  1  TRI12     Fungal trichothecene efflux pump (TRI12)
    1.7e-07   30.5  23.4    8.4e-06   24.9  23.4    2.7  1  Sugar_tr  Sugar (and other) transporter
     0.0094   14.3   3.1      0.011   14.0   0.5    2.2  2  OATP      Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.0  26.5     9e-48     4e-44       2     351 ..      86     467 ..      85     469 .. 0.84
   2 !    5.9   1.3    0.0012       5.2     140     173 ..     471     504 ..     465     535 .. 0.72

  Alignments for each domain:
  == domain 1  score: 151.0 bits;  conditional E-value: 9e-48
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlga 99 
                 +++ f++a++++++++ l   ++ed+++s+ ++ l +t++ +g++v+ + ++++s+ +Gr+ v+l +l++ +++ ++++ ++ ++ +llv+r++ G++ 
  KKY23690.1  86 AFTCFVVAFNSAVITADLG-GVSEDFNVSGEVALLTITMFVIGFGVGPMAFAPMSEMLGRKIVYLSTLAVAVVF-IIPCaVSKNIGTLLVCRLIDGIAF 182
                 78999**************.******************************************************.66662447777************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 +a +++++  +ad+++ eerg  ++ +sa+  +G+++gpl+gg+l+++ +Wr++++i  i+s  a +l ++ +pe++ +   ++ + ++          
  KKY23690.1 183 SAPMTLVGGTLADLWKNEERGVPMAAFSAAPFIGPAIGPLVGGYLSDATSWRWLYWIQLILSGAAWLL-IATVPETYAPTLLSRRAAKLrkeknddryt 280
                 ****************************************************************9663.355555555555555555558888888888 PP

       MFS_1 189 ..kgtgpaplvp........awkallkdpvlw.illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr...... 270
                   k   p+pl++        ++++l+  p ++ i +++++l +  ++++++ +pl++ e  g+s + ++g l+ ++ +vg+i++ +++ ++++      
  KKY23690.1 281 teKELDPRPLSErlriflvrPFQLLFLEPIILfITIYMSVLYG-LLYMFFVAFPLIFEEGKGYS-AGQTG-LMFIPLAVGVIMSSMCSPFVNKhynklc 376
                 8877777777774444444446666666655545555555555.7888*******99*******.56666.6888888888888888888877766677 PP

       MFS_1 271 .......lgrrrrlllallllllaalglallavtssavllllvlvl....iGfglgfvfpsllalasdlappeeagtasglfntagslggal 351
                          +++rll +++++ ++ +gl+++a+ts +++++++ ++    +Gfg+ f + s++++++d +  ++a++ +++ ++++s+ ga+
  KKY23690.1 377 akapngrPVPETRLLPMMFGCWFIPVGLFIFAWTSYPHVSAWGPMIggwpVGFGFIFLYNSANNYIVDTYQ-HQAASGLAAKTFLRSIWGAV 467
                 7777766666********************************99999*99***99999************3.66667777777888888876 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0012
       MFS_1 140 lggllasslgWravfyilaivsllafvlfllllp 173
                 +   +++ lg++++  ++a++sl ++++ +++++
  KKY23690.1 471 FTEQMYHRLGYEWAGTLMAFISLACCLIPFVFYY 504
                 5555788899999999999999999885555542 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   1.8   1.5e-11   6.7e-08      52     232 ..      84     272 ..      74     279 .. 0.77

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1.5e-11
       TRI12  52 nvvatyfvlqasa....salpnilqdvgqsensslf.stlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgva. 144
                  v+ t fv+   +    + l  + +d   s + +l+  t++ +g  v  + +  +++ +gr+ + + t  + +v  i  + ++++ tll +  + g+a 
  KKY23690.1  84 VVAFTCFVVAFNSavitADLGGVSEDFNVSGEVALLtITMFVIGFGVGPMAFAPMSEMLGRKIVYLSTLAVAVVFIIPCAVSKNIGTLLVCRLIDGIAf 182
                 4555666654333011134666777887776666651699**********************999999998888766655666789*****99999994 PP

       TRI12 145 agpagasplfvgelmsnktkflgllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvw..yyppsfaqlhgkkvrk 232
                 + p       + +l  n  + + +   s+   +  +++p +g  l+   swrw+++i +i+s  a lli      y p++      k rk
  KKY23690.1 183 SAPMTLVGGTLADLWKNEERGVPMAAFSAAPFIGPAIGPLVGGYLSDATSWRWLYWIQLILSGAAWLLIATVpeTYAPTLLSRRAAKLRK 272
                 4688888888999***********999988888888*****************************9999653224556555555555554 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9  23.4   1.9e-09   8.4e-06       6     437 ..      86     503 ..      81     512 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.9e-09
                 HHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TG CS
    Sugar_tr   6 alggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvev 104
                 a++ ++  ++++vi a l   +   +f++s ++           l+  +f++G  +G + + ++++++GRk ++l + +++v+ ++ +a++k   ++  
  KKY23690.1  86 AFTCFVVAFNSAVITADLGGVS--EDFNVSGEV---------ALLTITMFVIGFGVGPMAFAPMSEMLGRKIVYLSTLAVAVVFIIPCAVSK---NIGT 170
                 5555555555555544333333..344444333.........258899********************************************...**** PP

                 GGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT- CS
    Sugar_tr 105 livgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekgk 203
                 l+v+R++ Gi+  +  +lv  +++ + + + Rg  +  +  a  +G  ++  +g  l++ ++   wr+l ++ql+++ +  +l+ ++PE+    +  + 
  KKY23690.1 171 LLVCRLIDGIAFSAPMTLVGGTLADLWKNEERGVPMAAFSAAPFIGPAIGPLVGGYLSDATS---WRWLYWIQLILSGAAWLLIATVPET----YAPTL 262
                 ****************************************************9999999999...*************************....33333 PP

                 HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH......HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHH CS
    Sugar_tr 204 eeeakevlaklrgeedadrelaeekdsleaeqeee.kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnf 301
                  ++  + l+k  +++d+    ++e d    +  e+  +++ + ++    +   +i + +  +  l G  ++++ +  ++ + g   s+ +t+++ +  +
  KKY23690.1 263 LSRRAAKLRK--EKNDDRYTTEKELDPRPLS--ERlRIFLVRPFQL--LFLEPIILFITIYMSVLYGLLYMFFVAFPLIFEEGKGYSAGQTGLMFIPLA 355
                 3333333333..1233333333344444433..3333444333333..333444455555667788888888888666666677777667777777777 PP

                 HHHHHHHHHHHHS-SHHHHHHH............HHHHHHHHHHHH....HHHHTTSS.....CHHHH..HHHHHHHHHHHTTTTHHHHHHHHHHSHTT CS
    Sugar_tr 302 vatfvaiflvdrfGRRtllllG............aagmaicfvilg..ivalllvaks..kaasivai..vfialfialfalgwgpvpwvlvsElfpqs 382
                 v ++++ +++  + + +  l              ++ m++ ++++      +++++    +a++ ++      + fi+l++   + ++     ++  q+
  KKY23690.1 356 VGVIMSSMCSPFVNKHYNKLCAkapngrpvpetrLLPMMFGCWFIPvgLFIFAWTSYPhvSAWGPMIGgwPVGFGFIFLYNSANNYIV-----DT-YQH 448
                 7777777766666666555555888999999999666666666665454455555555564444333311345667777774444444.....44.466 PP

                 THHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS CS
    Sugar_tr 383 vRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffv 437
                   +++la  +++  ++  ++ l++ ++  ++g  + + + a++ ++ +++ f+f+
  KKY23690.1 449 QAASGLAAKTFLRSIWGAVVVLFTEQMYHRLGYEWAGTLMAFISLACCLIPFVFY 503
                 7789999999999***************999944444444444444444444443 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.5   2.5e-06     0.011     132     316 ..     168     332 ..     150     380 .. 0.65
   2 ?   -0.3   0.1     0.054   2.4e+02     212     236 ..     479     503 ..     427     537 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.5e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 132 vllfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllklyvdidseisltpkdprWvgaWWlgflilgvllllaa 230
                 +  +++  l+ Gi+ ++ +tl    + D  k+++  + +++++a+ ++Gpa+G l+G++l                 ++W   +W+  +++g++ ll+a
  KKY23690.1 168 IGTLLVCRLIDGIAFSAPMTLVGGTLADLWKNEERGVPMAAFSAAPFIGPAIGPLVGGYLSD----A----------TSWRWLYWIQLILSGAAWLLIA 252
                 45678889999***99999999999*********************************7654....3..........4688889*********999999 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
        OATP 231 iplffFPkelpkkkeerakkkseeesaekkeekkkkeksksseeeelkslkdfp.kalkrllknpifll.vilssvfeillvaGfitF 316
                  +   +  +l ++++ + +k+++ ++   ++ek+ + +  s+      +l+ f+ + +  l+ +pi l+ +i  sv++ ll++ f++F
  KKY23690.1 253 TVPETYAPTLLSRRAAKLRKEKNDDR--YTTEKELDPRPLSE------RLRIFLvRPFQLLFLEPIILFiTIYMSVLYGLLYMFFVAF 332
                 77777766654333333333332221..22222222222222......2333331333334444444441444556666666655555 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.054
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 212 vgaWWlgflilgvllllaaiplffF 236
                 +g  W g l++ + l+++ ip++f+
  KKY23690.1 479 LGYEWAGTLMAFISLACCLIPFVFY 503
                 5666999999999999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 3468.90
//
Query:       KKY23691.1  [L=397]
Description: putative acylamide-delta3desaturase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-13   50.7  25.4    3.3e-13   50.1  25.4    1.2  1  FA_desaturase  Fatty acid desaturase


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1  25.4   1.9e-17   3.3e-13      14     232 ..     127     315 ..     110     319 .. 0.81

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 1.9e-17
  FA_desaturase  14 lfllgitgslaHeaaHgalfkkrklnrwlndllgallglplgisysawrisHlrHHay.tngpdeDpdlaplal.srfeglfryllrlllgllvlg 107
                    +  l+ ++ +aH  +H  ++       w           ++g ++ +++++H +HH+   ngp  D ++   ++   +++l++y+ r+ ++ ++  
     KKY23691.1 127 IY-LFHNFTWAHGMLHTIMT------AWY-------SDPLMGHTWNSYYYHHVKHHHVeGNGP-NDLSSTIRLQrDEWKSLAYYVGRFAFLIWFDL 207
                    33.44445888888884444......555.......6666999*********66666636666.99998744447888888888888888888877 PP

  FA_desaturase 108 wllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglalllwlvplllllfllalvlnyveHyggdwgerqvetsasirs 203
                              +++++ ++++ +  +++w l  w+l+  a+   w a+l+       ++++p++l+   l++  n+ +H+++d  +++  ++ si+ 
     KKY23691.1 208 ---------PMYFIKTNKRQHAFHAAFWELASWALVTTAIKSNWRAALF-------VFVMPFCLIRLGLMIG-NFGQHAFVDEVDPDSDYRSSITL 286
                    .........999999999999999999**********999999999999.......9999999999999999.*******999999999999999* PP

  FA_desaturase 204 aswllnlltgnlnyHieHHlfPgvpwyrL 232
                    +  ++n +++n +yH++HHl P  +w   
     KKY23691.1 287 IDVPSNRFCFNDGYHTAHHLNPLRHWRDQ 315
                    **********************9999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 2429.65
//
Query:       KKY23692.1  [L=362]
Description: putative c6 finger domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2393.14
//
Query:       KKY23693.1  [L=427]
Description: putative arginine permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-65  219.6  39.3    8.2e-33  113.7  18.6    3.0  3  AA_permease    Amino acid permease
    1.6e-17   63.5  33.4    3.7e-09   35.9  10.3    2.0  2  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.7  18.6   9.1e-37   8.2e-33       1     146 [.      47     200 ..      47     200 .. 0.93
   2 !  104.1   1.5   7.6e-34   6.8e-30     228     356 ..     201     332 ..     200     341 .. 0.94
   3 !   15.4   3.4   5.8e-07    0.0052     413     476 ..     339     396 ..     334     398 .. 0.93

  Alignments for each domain:
  == domain 1  score: 113.7 bits;  conditional E-value: 9.1e-37
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ia+ggviGtglf+g++  l ++Gp+g+l++y ++   +f vm+ lge+++++p  gg  ++a rf+ pelGf++G +y++++i+vl++e+ aa+
   KKY23693.1  47 HMQMIAIGGVIGTGLFLGTAGDLENGGPAGLLIGYCVMASLLFSVMVVLGEMVSKFPIPGGQFALAGRFVAPELGFAMGVLYWYNYIIVLPAEISAAA 144
                  99************************************************************************************************ PP

  AA_permease  99 iliqfwelvtdlpkawvt...........gavflvvlliinlvgvkvygeaefilalik 146
                   li++w    ++     t           + ++l+v+ +in+ g +v+ge+ef++++ik
   KKY23693.1 145 VLISYWTPAGQAD---STcttgvcnnamwVGLMLIVVWAINFGGTRVFGEMEFWFCSIK 200
                  ******5544444...4444588998888778999999*******************98 PP

  == domain 2  score: 104.1 bits;  conditional E-value: 7.6e-34
  AA_permease 228 PeksiPkailqvviritifYvlslll...igllvprndlgllndsasaaspfvifikesgvsvlaplinaviltaalssansslysasRvlyslakdg 322
                  P++s+P+ai+ v ir+++fY++s++l   igllv+ +d++l  ds  a+spfvi+ik++g+svl++++na++lt+a+s++ + l+++sR+ly l  +g
   KKY23693.1 201 PQRSVPRAIKGVWIRLVLFYLCSVFLvreIGLLVSPSDPSLNLDSTAAKSPFVIAIKNAGISVLPSIVNAALLTSAWSAGCADLFVSSRTLYGLYTRG 298
                  9************************955569**********9999999************************************************** PP

  AA_permease 323 laPkvlkkvskrgvPlraillsmiisllalllas 356
                   aP++l+k  k g P++ +l+ +++sll++++a+
   KKY23693.1 299 QAPRFLGKTRKDGLPWVCVLVGAAFSLLSFMAAN 332
                  ******************************8765 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 5.8e-07
  AA_permease 413 lgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkrpq 476
                   + +++l ++i++l++ ++  ++       +++++ f+ +y  ++ f ++++g+k++ k+k+ +
   KKY23693.1 339 AFGYYGLSICILVLIFGGFSSFIH------TFDTSAFITTYFPIPFFAVLFFGYKFYHKTKIVK 396
                  6899****************9999......99***************************99865 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8  15.2   1.8e-12   1.6e-08       8     146 ..      50     195 ..      43     200 .. 0.78
   2 !   35.9  10.3   4.2e-13   3.7e-09     215     397 ..     201     386 ..     197     390 .. 0.74

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 1.8e-12
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaEl.ssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaa 100
                    +++ig vig+g f  +  ++++ggpa +l++  ++  ++++v+ v+ E+ s  +p  gG++  + ++  + ++f ++ ++w+ y++vl++ +s+aa
     KKY23693.1  50 MIAIGGVIGTGLFLGTagDLENGGPAGLLIGYCVMASLLFSVMVVLGEMvSK-FPIPGGQFALAGRFVAPELGFAMGVLYWYNYIIVLPAEISAAA 144
                    799**********999999999***9665555555555578999*****666.***********************************99888887 PP

  AA_permease_2 101 syllnalgpdlqgntwltylia......iaililvalinirgikesakiqni 146
                      + + + p +q + ++t ++        + li+v++in  g++  + + ++
     KKY23693.1 145 VLISY-WTPAGQADSTCTTGVCnnamwvGLMLIVVWAINFGGTRVFGEMEFW 195
                    77777.6787777643333333333332366778899999999988887776 PP

  == domain 2  score: 35.9 bits;  conditional E-value: 4.2e-13
  AA_permease_2 215 kkkdvpkaifigllivlvlyllvnia....flgvvpddeianlsn..lgsvaalffeavggkvvaiivvilialsllgaintavigssrvlealar 304
                    +++ vp+ai  +++  +++yl   ++     l v+p d   nl++    s++ +  +++g +v+ +iv++++  s++ a+++ ++ ssr+l+ l++
     KKY23693.1 201 PQRSVPRAIKGVWIRLVLFYLCSVFLvreiGLLVSPSDPSLNLDStaAKSPFVIAIKNAGISVLPSIVNAALLTSAWSAGCADLFVSSRTLYGLYT 296
                    56999999966666555555554443222268899998886666633445799******************************************* PP

  AA_permease_2 305 dgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigal...ilrkkrphlkrpgkilvaiigalfllf 397
                     g  Prf+ k++k g p++++ + a +sl+    f++a++ +  + ++ + +gl i++l+li+g++   i+ ++   + + ++ ++ ++++lf+ +
     KKY23693.1 297 RGQAPRFLGKTRKDGLPWVCVLVGAAFSLLS---FMAANNGK--AGTAFGYYGLSICILVLIFGGFssfIHTFDTSAFITTYF-PIPFFAVLFFGY 386
                    ****************************554...45655444..444455555555555555555522277777777666664.578888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 3014.33
//
Query:       KKY23694.1  [L=374]
Description: putative phosphatidylinositol transfer protein sfh5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-13   49.0   0.0    8.9e-13   48.3   0.0    1.4  1  CRAL_TRIO        CRAL/TRIO domain
    1.6e-05   25.0   0.0    3.7e-05   23.8   0.0    1.7  1  CRAL_TRIO_N      CRAL/TRIO, N-terminal domain
     0.0035   16.9   0.0       0.28   10.8   0.0    2.3  2  DMA              DMRTA motif
  ------ inclusion threshold ------
      0.032   12.5   0.3      0.047   12.0   0.3    1.2  1  CCD48            Coiled-coil domain-containing protein 48
       0.99   10.1   4.7        5.7    7.7   1.1    2.7  2  Cytochrom_B562   Cytochrome b562
          3    7.4  16.0        4.3    6.9  16.0    1.2  1  DUF4045          Domain of unknown function (DUF4045)


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0     3e-16   8.9e-13      23     159 .]     202     353 ..     183     353 .. 0.77

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 3e-16
   CRAL_TRIO  23 ylrlg.rfdpkklsleelvralvlvlerllkelee.........dgqvegvtvviDlkglslskmlwkp.isll.kkilkilqdnyperlgkilivnaP 109
                 y +++ ++d+  + lee++ +++ ++e ++k+l           +    +++ v D+k +s+  ++++p ++ +  +++k++  +ype l++ ++vn+P
  KKY23694.1 202 YGNVKdKMDEVFVPLEEFLSYRIALQELGIKYLSIstatapitaTSDPYKMVQVHDYKSVSF--FRQNPnVRAAsTEVIKQFALVYPELLKEKFFVNVP 298
                 44444455555666789999999999999995555555556666667789***********5..566677666559*********************** PP

   CRAL_TRIO 110 klfkfafklvkpfldektreKikfvspsn.tea...tlekyid.peqlpkelGGt 159
                  ++ +++ ++k f+ ektr+K++ +s+ +  +a   + ++  d ++ lpke+GG+
  KKY23694.1 299 AVMGWVYGVIKLFVAEKTRKKFHPMSNGEnLTAefvSGKEGWDaKKLLPKEYGGE 353
                 ***********************99554403334443333334245679999995 PP

>> CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.2e-08   3.7e-05       3      53 ..      96     153 ..      94     154 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.2e-08
  CRAL_TRIO_N   3 dellahlqeseyklteeekfW.ltre.dhdda.......clLRfLRArkwdvekAikrLe 53 
                  + + a+l+e+ ++  ++ ++W ++++ + + +       +l +fL A++ d+ kAi++++
   KKY23694.1  96 NDFAAKLPEIIEE-IDYDEMWgVKLStS-PLEshiptqiVLQKFLNANDGDLTKAIEQFK 153
                  67889999****9.************52.3335777789*******************98 PP

>> DMA  DMRTA motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   9.3e-05      0.28      18      37 .]     133     152 ..     130     152 .. 0.92
   2 ?    3.7   0.0     0.016        47       2      22 ..     163     183 ..     162     183 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.3e-05
         DMA  18 vLelvLqrCkGDVvqAIEqv 37 
                 vL++ L++ +GD+ +AIEq+
  KKY23694.1 133 VLQKFLNANDGDLTKAIEQF 152
                 89999*************97 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.016
         DMA   2 sPldiLarvFPnhkrsvLelv 22 
                  Pl++L + F+ +k ++L lv
  KKY23694.1 163 KPLELLEKTFNAKKFADLGLV 183
                 6*************9999776 PP

>> CCD48  Coiled-coil domain-containing protein 48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   1.6e-05     0.047      79     161 ..      48     136 ..      35     141 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.6e-05
       CCD48  79 ase..aaedaeskdvasgdaaagevaeadedaeeearlalraepPeltfrqfharlcGy.....fgtraGarlPrGalsehietqirlrr 161
                 a+e   ae++++++ a +++aa++ a a++ +ee a++a  +++P   f  f a+l        +    G +l   +l  hi tqi l++
  KKY23694.1  48 AEEptKAEETKAEEPAKSESAAKVEAAAEKATEEPAKIA-EEKTPSTPFNDFAAKLPEIieeidYDEMWGVKLSTSPLESHIPTQIVLQK 136
                 333346788899999999999999999999999999988.5668999*********876222224567899***************9975 PP

>> Cytochrom_B562  Cytochrome b562
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   1.1    0.0019       5.7      25      69 ..      64     110 ..      35     114 .. 0.81
   2 ?    2.8   0.1      0.06   1.8e+02      24      55 ..     144     178 ..     133     181 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0019
  Cytochrom_B562  25 lkkalkelraaaedakeatpsklek...dseeqkdYqeGldklidqld 69 
                      ++++++ +aaae+a e+ + k+++   +s  ++d+ + l ++i+++d
      KKY23694.1  64 KSESAAKVEAAAEKATEEPA-KIAEektPSTPFNDFAAKLPEIIEEID 110
                     35677889999999998887.5555599999***************98 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.06
  Cytochrom_B562  24 elkkalkelraaaedakeatpsklek...dseeqk 55 
                     +l+ka++++++a +  ke++p +l +   ++++++
      KKY23694.1 144 DLTKAIEQFKSALKWRKEKKPLELLEktfNAKKFA 178
                     68899***************988766566666555 PP

>> DUF4045  Domain of unknown function (DUF4045)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  16.0    0.0014       4.3     249     347 ..       4     102 ..       1     108 [. 0.69

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0014
     DUF4045 249 eespapasseeskesekeeekeseeekapskkaeaseekkeeeeesepeeeee.rkeapsllsptskaesdkplskserdsllkkpkpqspvkkDFRan 346
                 +++p++a++ +++e++   e+++e++++ s+ +e  ++++e+++++ep++ ee ++e+p+ +++++k e ++  +++e ++ +++ +p++p + DF a+
  KKY23694.1   4 TQTPTTAATVSVPEKTVAPETATETKAVESAGTEDVKKTEEPATAEEPTKAEEtKAEEPAKSESAAKVEAAAEKATEEPAKIAEEKTPSTPFN-DFAAK 101
                 577875555555555566666666666666688899999999999999888884556666666666666666655565666666777777777.**999 PP

     DUF4045 347 L 347
                 L
  KKY23694.1 102 L 102
                 8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1237  (0.0689944); expected 358.6 (0.02)
Passed bias filter:                      683  (0.0380947); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 2427.37
//
Query:       KKY23695.1  [L=324]
Description: putative small monomeric gtpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-90  301.8   0.1    3.3e-90  301.5   0.1    1.1  1  Gtr1_RagA     Gtr1/RagA G protein conserved region
    2.7e-08   34.0   0.0    5.2e-08   33.1   0.0    1.5  1  Roc           Ras of Complex, Roc, domain of DAPkinase
    4.2e-07   29.7   0.0    6.1e-07   29.2   0.0    1.3  1  Ras           Ras family
    1.5e-06   28.2   0.0    2.7e-06   27.4   0.0    1.4  1  MMR_HSR1      50S ribosome-binding GTPase
    2.4e-06   27.1   0.0    3.4e-06   26.6   0.0    1.3  1  Arf           ADP-ribosylation factor family
      0.001   18.3   3.5       0.48    9.5   0.0    2.7  3  G-alpha       G-protein alpha subunit
  ------ inclusion threshold ------
      0.014   15.3   0.1       0.28   11.1   0.0    2.2  2  RsgA_GTPase   RsgA GTPase
      0.016   15.0   0.7      0.054   13.2   0.3    2.1  2  AAA_29        P-loop containing region of AAA domain
      0.021   15.4   0.0      0.036   14.6   0.0    1.6  1  ABC_tran      ABC transporter
      0.029   14.4   0.0      0.064   13.3   0.0    1.6  1  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
      0.042   13.4   0.0       0.15   11.5   0.0    2.0  2  AAA_7         P-loop containing dynein motor region
      0.067   12.3   0.1       0.17   11.0   0.0    1.7  2  DUF815        Protein of unknown function (DUF815)
        0.2   11.4   0.4       0.63    9.7   0.1    1.9  2  AAA_24        AAA domain
       0.21   10.9   1.6       0.47    9.8   0.6    2.2  2  AIG1          AIG1 family


Domain annotation for each model (and alignments):
>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.5   0.1   2.6e-93   3.3e-90       1     231 [.       9     237 ..       9     238 .. 0.98

  Alignments for each domain:
  == domain 1  score: 301.5 bits;  conditional E-value: 2.6e-93
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletlk 99 
                 kvLLmGksgsGK+smrsiiF+n +a+d++rlgatidv++++ +f+g ltlnlwDcgGq+af+e+yl++q+++if++v+vliyVfD+esre+++dl+ ++
  KKY23695.1   9 KVLLMGKSGSGKSSMRSIIFSNWVAKDVRRLGATIDVDHTHAKFMGSLTLNLWDCGGQDAFMESYLTNQRKNIFSDVAVLIYVFDIESREFDRDLDVYS 107
                 8************************************************************************************************** PP

   Gtr1_RagA 100 eilealrqyspeakvfvlihKmDliqedereeifeerkeeireeieklekeeiqffaTSiwdeslykAfssivqklipnldvleelLkklaeaieaeev 198
                 +i+ al+++sp+a+vf+lihKmDliq ++++++ eer++ ire+++ l    i++fa+Siw++sly+A++siv+klipnl+ +e+ L+ +a++i+aee+
  KKY23695.1 108 NIIAALKEFSPDAHVFCLIHKMDLIQPEHQDRLAEERSTLIRERSHGLA---IDTFASSIWNQSLYRAWASIVHKLIPNLTAIEHFLSAFADQISAEEI 203
                 ************************************************9...*********************************************** PP

   Gtr1_RagA 199 lLferstflviatvsskeaeekdas.rfekvsei 231
                 +Lferstfl++++v + + ++++   r+e++s+i
  KKY23695.1 204 ILFERSTFLTVTSVVTDRGRDNPLPdRHERISNI 237
                 ************99988887766545******98 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   4.1e-11   5.2e-08       1     119 [.       9     130 ..       9     131 .. 0.71

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 4.1e-11
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTT.....T-HHHHCTSCEEEEEEE..GHHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrs.....lhplylreaalailvyd..srss 92 
                 Kv+l+G+sg+GK+s+ + + ++ +  k    +g+++   ++ +       k + +++ln+WD +Gq+ f +      ++  +++ a++i+v+d  sr++
  KKY23695.1   9 KVLLMGKSGSGKSSMRSIIFSNWVA-KDVRRLGATIDVDHT-HA------KFMGSLTLNLWDCGGQDAFMEsyltnQRKNIFSDVAVLIYVFDieSREF 99 
                 99************98877766665.555667776655443.22......2245799**********99753321134677889999999999654444 PP

                 .HCH...HHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  93 .enl...keWlkelkkvagkspvilvgnkiD 119
                  ++l   ++ +  lk+ ++++ v++++ k+D
  KKY23695.1 100 dRDLdvySNIIAALKEFSPDAHVFCLIHKMD 130
                 2333222678889999999999999999999 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   4.8e-10   6.1e-07       1     119 [.       9     137 ..       9     178 .. 0.69

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 4.8e-10
                 EEEEEESTTSSHHHHHHHHHHSSCSSS...CTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGG.....HHHHHHHHTTESEEEEEEETTBHH...HHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkee...yesTigvdfytkeievdgkevkleiwDTAGqeef.....kslrelyyrdaegillvyditsre...sfe 88 
                 K++l+G+s+ GK+s+     ++   ++     +Ti vd + +++     +++l++wD  Gq+ f     ++ r++ ++d+ +++ v+di+sre    ++
  KKY23695.1   9 KVLLMGKSGSGKSSMRSIIFSNWVAKDvrrLGATIDVDHTHAKF---MGSLTLNLWDCGGQDAFmesylTNQRKNIFSDVAVLIYVFDIESREfdrDLD 104
                 89***********9876555554444300045677555555544...4579***********993322234578899*************997221344 PP

                 THHHHHHHHHHHSTTTSEEEEEEETTTGGG...G CS
         Ras  89 nvkkwveeikrvaeenvpivLvGnKvDlee...k 119
                   ++++  +k+  ++  ++  +  K+Dl +   +
  KKY23695.1 105 VYSNIIAALKEFSPD-AHVFCLIHKMDLIQpehQ 137
                 445666666666666.555555589999774443 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   2.1e-09   2.7e-06       1      97 [.       9     103 ..       9     128 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 2.1e-09
                 EEEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETT.EEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETTTTCSHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkg.keielvDtpGliegaseekglgkaflalee.adlillvvdaseeklkpldee 96 
                 +v+++G++ +GKS++ + ++ + +a+  ++ g+T+d+ + + k+ g   ++l+D+ G  + a  e  l+++ +++ + + ++++v+d++++++   d++
  KKY23695.1   9 KVLLMGKSGSGKSSMRSIIFSNwVAKDVRRLGATIDVDHTHAKFMGsLTLNLWDCGG-QD-AFMESYLTNQRKNIFSdVAVLIYVFDIESREF---DRD 102
                 589*****************9999999*************999777799********.43.44455566666654444899******883333...333 PP

                 H CS
    MMR_HSR1  97 l 97 
                 l
  KKY23695.1 103 L 103
                 3 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   2.7e-09   3.4e-06      11     138 ..       4     142 ..       1     175 [. 0.75

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2.7e-09
                 .TTEEEEEEEESTTSSHHH....HHHHHHHSSCEECSSSSSEEEEEEEE.TTEEEEEEEE-SSGGGGGGG.....GGGCTTESEEEEEEETT-CTTHHH CS
         Arf  11 kkkelrilllGLDnaGKtT....ilkklkleelvttvPTigfnveelei.knlkftvwDvGGqeklRplW.....knYfektdavifvvDsadreRlee 99 
                 +kk+ ++ll+G  ++GK+     i  +   +++ +   Ti  +  + ++   l++++wD GGq+   + +     kn f+++ ++i+v D   re ++ 
  KKY23695.1   4 RKKKKKVLLMGKSGSGKSSmrsiIFSNWVAKDVRRLGATIDVDHTHAKFmGSLTLNLWDCGGQDAFMESYltnqrKNIFSDVAVLIYVFDIESRE-FDR 101
                 68999************86333367888999999999999988777765389***********986554433333899**********9987765.444 PP

                 HHHHHHHHCTS.GCCT.TSEEEEEEE-TTSTTSS-HHHHHH CS
         Arf 100 akeeLkallee.eelk.evallvlaNKqDlpealseeelre 138
                   +  +++++  +e + ++++  l  K+Dl +  +++ l+e
  KKY23695.1 102 DLDVYSNIIAAlKEFSpDAHVFCLIHKMDLIQPEHQDRLAE 142
                 44444444443144444889999999999988777766655 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.4   0.00068      0.86      17      39 ..       5      23 ..       1      27 [. 0.79
   2 !    9.5   0.0   0.00038      0.48     187     236 ..      41      95 ..      33     117 .. 0.85
   3 ?   -1.1   0.0      0.64   8.2e+02      63     110 ..     176     246 ..     144     283 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00068
                XXXE..EEEEEEEESTTSSHHHH CS
     G-alpha 17 arkkkrevkllllGqseSGKsTi 39
                ++    + k+ll+G+s+SGKs++
  KKY23695.1  5 KK----KKKVLLMGKSGSGKSSM 23
                33....459************96 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00038
                 ---SEEEEEEECT-TEEEEEEEE-SSHHHHHGTC.....CCTTTECEEEEEEEGG CS
     G-alpha 187 ktvGisetkfevdsklefrivdvgGqrserkkWv.....pffddvdaiiFlvsls 236
                  t+ + +t+ ++  +l+++++d+gGq +  + ++     ++f+dv ++i++  ++
  KKY23695.1  41 ATIDVDHTHAKFMGSLTLNLWDCGGQDAFMESYLtnqrkNIFSDVAVLIYVFDIE 95 
                 58899999999988***************999998888789**********8875 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.64
                 HHHHHHHHHHHHHHHHHHTT..............................HHHC-SS-SCCCS-HCHHHH. CS
     G-alpha  63 iqlnivrsiktilealesleselsesf.......................elqelkerldplkkveaslia 110
                 i ++++ ++  i   l+ + +++s++                         l++++er+++++k  +  ia
  KKY23695.1 176 IVHKLIPNLTAIEHFLSAFADQISAEEiilferstfltvtsvvtdrgrdnPLPDRHERISNIFKTFKHSIA 246
                 34444444444444444444444333345666666666666666666555555555555555333333232 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00022      0.28      98     121 ..       6      29 ..       1      47 [. 0.82
   2 ?    2.1   0.0      0.13   1.6e+02      45      70 ..     118     142 ..      71     177 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00022
                  TTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallp 121
                  k+k ++l+G+SG GKS++   + +
   KKY23695.1   6 KKKKVLLMGKSGSGKSSMRSIIFS 29 
                  568899***********9777665 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.13
                  TT-EEEEEEE-GGG--HHHHHHHHHH CS
  RsgA_GTPase  45 kgiepvivlnKiDlleeeeeleelke 70 
                   ++++  ++ K+Dl++ e+  ++l+e
   KKY23695.1 118 PDAHVFCLIHKMDLIQPEH-QDRLAE 142
                  46788999*******9998.333333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   4.2e-05     0.054      23      38 ..       8      23 ..       1      26 [. 0.81
   2 ?   -1.4   0.0       1.6     2e+03      43      57 ..     281     295 ..     279     301 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.2e-05
      AAA_29 23 gatlltGpsGsGKSTl 38
                  +ll+G+sGsGKS++
  KKY23695.1  8 KKVLLMGKSGSGKSSM 23
                269***********86 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.6
      AAA_29  43 qalLvpakkvrfNka 57 
                 +++ +p+ + +fN a
  KKY23695.1 281 IFVVMPPGEGAFNCA 295
                 578889988999977 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.8e-05     0.036       9      33 ..       5      29 ..       3     122 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.8e-05
                ETTSEEEEEESTTSSHHHHHHHHTT CS
                xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  9 kegekvaivGenGaGKStLlkllag 33
                k+ +kv ++G++G+GKS++ +++  
  KKY23695.1  5 KKKKKVLLMGKSGSGKSSMRSIIFS 29
                57899*************9998875 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     5e-05     0.064      58     103 ..     122     167 ..      98     169 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5e-05
  MMR_HSR1_Xtn  58 clyvlNKiDlisleeldelarepnsvviSaekelnldeLkekiwee 103
                   +++++ K+Dli+ e+ d+la+e+++++   +++l +d+  + iw++
    KKY23695.1 122 VFCLIHKMDLIQPEHQDRLAEERSTLIRERSHGLAIDTFASSIWNQ 167
                   567899****************9999999***************86 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012      0.15      31      58 ..       5      32 ..       2      60 .. 0.76
   2 ?   -3.4   0.0       4.7     6e+03     143     163 ..     272     292 ..     266     294 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
       AAA_7 31 knkkpvllvGptGtGKtviikdllkkld 58
                k+kk+vll+G++G+GK+++ + ++++  
  KKY23695.1  5 KKKKKVLLMGKSGSGKSSMRSIIFSNWV 32
                689**************99877665554 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.7
       AAA_7 143 fkeikdvqlvaamgppgggrn 163
                 +++ +d +++  + ppg g +
  KKY23695.1 272 LQNFTDNTYIFVVMPPGEGAF 292
                 567788888888888888865 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00014      0.17      52      82 ..       6      36 ..       2      63 .. 0.74
   2 ?   -2.9   0.0       2.4     3e+03     142     159 ..     293     310 ..     291     317 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
      DUF815 52 pannvLLwGarGtGKSslvkallneyaeegL 82
                + ++vLL+G+ G+GKSs+   ++++  ++ +
  KKY23695.1  6 KKKKVLLMGKSGSGKSSMRSIIFSNWVAKDV 36
                5689*************98877777766664 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.4
      DUF815 142 nvliyaTsNrRhLlpekl 159
                 n  +y T+  R++l++++
  KKY23695.1 293 NCAVYNTASARDILRKHV 310
                 7889********999876 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00049      0.63       1      18 [.       6      23 ..       6      37 .. 0.90
   2 ?   -1.8   0.0       1.7   2.1e+03      88     126 ..     242     280 ..     236     284 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00049
      AAA_24  1 kklkiliyGpsgiGKTtl 18
                kk+k+l++G+sg+GK+++
  KKY23695.1  6 KKKKVLLMGKSGSGKSSM 23
                589*************96 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.7
      AAA_24  88 qnekaeskedkgdgkGygelaeefrrllkklqelrknvi 126
                 ++++a++ ++ ++++G+++++ + r++   lq++ +n +
  KKY23695.1 242 KHSIAKNTKSTPAAAGFVLWKLQTRQFNIFLQNFTDNTY 280
                 566767777888899999999888888888888877443 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.6   0.00037      0.47       2      28 ..       9      34 ..       8     150 .. 0.68
   2 ?   -1.7   0.0       1.2   1.5e+03     104     131 ..     187     214 ..     184     241 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00037
                EEEEESSTTSSHHHHHHHHHTS--SS- CS
        AIG1  2 tivlvGktgnGkSaTgNsilgkkaFes 28
                +++l+Gk+g+GkS+   si+ ++    
  KKY23695.1  9 KVLLMGKSGSGKSSM-RSIIFSNWVAK 34
                79***********85.56665555555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.2
                 HHHHHHHHCGGGGGGEEEEEEEGGGGTT CS
        AIG1 104 lktlkelFGekilkylivvftrkddled 131
                 +++  ++F ++i    i++f r   l  
  KKY23695.1 187 IEHFLSAFADQISAEEIILFERSTFLTV 214
                 5666678999999999999998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 2188.23
//
Query:       KKY23696.1  [L=471]
Description: putative conserved fungal protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.9e-161  537.5   0.0   3.5e-151  503.7   0.0    2.0  2  DUF1688   Protein of unknown function (DUF1688)


Domain annotation for each model (and alignments):
>> DUF1688  Protein of unknown function (DUF1688)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.2   4.7e-13   8.5e-09       1      46 [.      69     114 ..      69     116 .. 0.98
   2 !  503.7   0.0    2e-155  3.5e-151      76     422 .]     112     471 .]     111     471 .] 0.98

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 4.7e-13
     DUF1688   1 yLrslkavRerckkvlelakegklehfdvdeskleevadfvvkvik 46 
                 yLrs+ avRer+k vle+ake++l+hfdvd++k++++  +vv++ik
  KKY23696.1  69 YLRSIYAVRERSKIVLEKAKENDLNHFDVDMTKFSATSAYVVSIIK 114
                 8********************************************8 PP

  == domain 2  score: 503.7 bits;  conditional E-value: 2e-155
     DUF1688  76 lleklkkekdelekarrliDLflvsvLLDagagekwkykekesgekykrseGlavaslemFkaglfssdeeeklrvdaegLkkltaeklakalqvseen 174
                 +++++ +++d++e++rrl+DLflvsvLLDagag+kw+yk+kesg+k++rseGlavaslemFk+g+fssd+++++rvda gLk++t+e+l+k++qvse+n
  KKY23696.1 112 IIKSWPSTVDPQERTRRLLDLFLVSVLLDAGAGTKWSYKSKESGKKFNRSEGLAVASLEMFKTGIFSSDPSQPFRVDAGGLKNITVETLTKGMQVSEDN 210
                 6789**9******************************************************************************************** PP

     DUF1688 175 plvGlegRaelLkrLgealeekpevfgeegrpgnlvdyllskakekasskkeveleelwevlleglapiWpasrtkidgvslGDvWplsalkks.keee 272
                 p+ GlegRa lL rL++al +++e+fg ++rpgn++dyl+s+++++ass ++v+l++lw+vl++gla iWp++rt+i+gvslGD+Wp+s + +s  +++
  KKY23696.1 211 PMDGLEGRAGLLMRLSKALYSNEEYFGPDARPGNMLDYLISHPTTQASSVPIVALPTLWKVLMDGLAAIWPKARTQIAGVSLGDAWPCSDMPASpPARS 309
                 *******************************************999*********************************************9877899* PP

     DUF1688 273 eeslvpfHkLsqWltYSLleplekllglkvegleeltgLpeYrNGGLlvDlgvltlkkealerglkksee...........elpafeasdevivewRal 360
                 +e++vpfHkL+qWl+YSL++p++kll+++++g+e +tgLpeYrNGGLl+D+g+l+lk++++erg++++++           ++p fe+sd+v+vewRa+
  KKY23696.1 310 WENIVPFHKLTQWLCYSLMVPMTKLLSIHFAGAELMTGLPEYRNGGLLIDTGLLSLKPADMERGVEAYKRnaqhkgapnveVVPLFEPSDDVVVEWRAV 408
                 *****************************************************************99998999*******99***************** PP

     DUF1688 361 TvalLDelaeevrekle.lsaeeLsLaqvLeagtWkaGReiAkekrpetkepPieiesDgtvF 422
                 Tv +LDel eev++ l+ + +++LsLaq+LeagtWk+GReiA+ +rp+t+epPi+i sDgtvF
  KKY23696.1 409 TVGFLDELLEEVNKGLNlTGKDKLSLAQMLEAGTWKGGREIAAYSRPNTREPPIMILSDGTVF 471
                 *****************7777*****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 2868.13
//
Query:       KKY23697.1  [L=748]
Description: putative purine nucleoside [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.7e-134  446.9   0.1     5e-134  446.4   0.1    1.1  1  NUP       Purine nucleoside permease (NUP)
    2.9e-33  114.3   0.0      5e-33  113.6   0.0    1.4  1  UPF0029   Uncharacterized protein family UPF0029
    5.7e-06   26.6   0.0    2.5e-05   24.5   0.0    2.1  2  RWD       RWD domain
  ------ inclusion threshold ------
       0.17   11.5   0.0       0.46   10.1   0.0    1.7  1  UQ_con    Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> NUP  Purine nucleoside permease (NUP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  446.4   0.1  1.1e-137    5e-134       2     312 ..      41     357 ..      40     358 .. 0.99

  Alignments for each domain:
  == domain 1  score: 446.4 bits;  conditional E-value: 1.1e-137
         NUP   2 vkvvivsmFegEaqawlerlk....laenitvpglsplypevhcnadgsvcqlvtGegeinaaasimaLvlsprFdLtktYfliaGiaGvnPkaatiGs 96 
                 +kv+ivsmF++Ea++w+  ++    l +nitvpg+s+lyp+ hc+adg++cq+v+Ge+einaaas++aLv+s  FdLtktYfl+aGiaGvnPk +t+Gs
  KKY23697.1  41 PKVFIVSMFDPEAEVWW-GIPefdiLGKNITVPGFSMLYPDAHCTADGDICQIVIGESEINAAASMSALVYSGVFDLTKTYFLVAGIAGVNPKISTTGS 138
                 9****************.6666999************************************************************************** PP

         NUP  97 vafaryavqvdlqyeidarelpkdwstgylplgtkepneypkeiygtevfelneaLrdwAvelakkakLkdseeaaayrakY...eyaaAqkpPsvvkc 192
                 v fa+ya+qv+lqye+dare+p++++tgy+p+g+++p+eyp++iygtevfe+neaLrd A+ +a++akL+ds++a ayra+Y    yaaA+k+Psvv+c
  KKY23697.1 139 VSFAKYAIQVALQYEFDAREIPDNFTTGYVPQGAESPTEYPTSIYGTEVFEVNEALRDYAIGFASSAKLNDSDAAIAYRAHYgdgIYAAATKEPSVVAC 237
                 ************************************************************************************99************* PP

         NUP 193 dtltsdtywsGkllseaaenltkllTngtgtycttaqEdnatleallraakaglvDfsRvivlRtasnFdrpppgvsaleslleaeqggfeaalenlyl 291
                 d++tsd+y+sG+llsea+en+t+l+Tng+g yc+taqEdna+le+l+r + a+l DfsR+i++Rt s+Fdrp+pg+s l++l++a+qg+fe+a++n+y 
  KKY23697.1 238 DVATSDVYYSGALLSEAFENTTTLFTNGSGVYCATAQEDNASLEVLVRSTLANLTDFSRIIIMRTFSDFDRPYPGESVLDNLFYADQGAFEPAIQNIYY 336
                 *************************************************************************************************** PP

         NUP 292 aGsevveeivknWestykkgv 312
                 aG +vv++i++ W +++++gv
  KKY23697.1 337 AGLRVVTGIINGWGEVFEAGV 357
                 ******************987 PP

>> UPF0029  Uncharacterized protein family UPF0029
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.0   1.1e-36     5e-33       2     105 .]     624     731 ..     623     731 .. 0.96

  Alignments for each domain:
  == domain 1  score: 113.6 bits;  conditional E-value: 1.1e-36
                 TEEEEEEEEE-SSHHHHHHHHHHH--..TT...SSEEEEEE....EE.....TTEE-TTSSTSHHHHHHHHHHTTB-SEEEEEEEE--SS--HHHHHHH CS
     UPF0029   2 kSrFiavlaaveseeevkaileelkkenkk...athniyAyrlrqkvek.vnedsdddgEpaAGkkllelLekeklenvlvvvtRwfGGikLGpgrlra 96 
                 kS+F+a+++++++++ + +++++l+++nkk   athni+A+rl++  +  v +dsdddgE+aAG +ll+l++ ++++nv+vvvtRw+GG+kLGp+r+r+
  KKY23697.1 624 KSTFLAHCVPCDNKSLASTYITHLLSTNKKvatATHNISAWRLKEPDTGvVVQDSDDDGETAAGGRLLHLMQLMDAWNVVVVVTRWYGGVKLGPERFRC 722
                 9****************************999**********999887647888********************************************* PP

                 HHHHHHHHH CS
     UPF0029  97 iseaareaL 105
                 i+ +a+eaL
  KKY23697.1 723 INGVAKEAL 731
                 *******97 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.83   3.7e+03      12      45 ..     181     212 ..     177     247 .. 0.66
   2 !   24.5   0.0   5.7e-09   2.5e-05       2     115 ..     456     557 ..     455     558 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.83
                 HHSTTTCCCCH..T--EE--S-EEEEEEECECCCC. CS
                 xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx RF
         RWD  12 sIypdefevie..nenysikleikikldededeeds 45 
                 sIy+ e  +++   + y     i++  + + +++d 
  KKY23697.1 181 SIYGTEVFEVNeaLRDYA----IGFASSAKLNDSDA 212
                 999999855543566666....66666666665554 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 5.7e-09
                 HHHHHHHHHHHHSTTTCCCCHT--EE--S-EEEEEEECECCCC....TT-CEEEEEEEEE-SSTTSS--EEEEEECC.SS-HHHHHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
         RWD   2 eqeqEleaLesIypdefevienenysikleikikldededeedsefeekkkpslkleiklpeeYPeeaPiislsste.nlpkeqvksleekleelaeen 99 
                   e+E+ ++++Iy    ++i ++n       ++++ + ++            s+++ i++p +YP+ +P+i+  ++  +  k + k   e l++++   
  KKY23697.1 456 ALEEEITSINAIYNPSTVEIVTDNAG----DTVTILSLPN-----------TSFSFRISFPGTYPDLPPQIHGIASVaEHRKGEGKAAAELLRNIIARV 539
                 6799*********8888777766777....3444444433...........359*****************9777664344444444555555555554 PP

                 ..TTS--CHHHHHHHHHH CS
                 ..xxxxxxxxxxxxxxxx RF
         RWD 100 ..lgepvifalidwlken 115
                   +g++++f+li++++ +
  KKY23697.1 540 wvSGQVCLFDLIEEARSQ 557
                 55***********98765 PP

>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0001      0.46      44      68 ..     491     515 ..     488     557 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0001
                 TEEEEEEEE--TTTTTS--EEEESS CS
      UQ_con  44 ggvFklelefpedYPlkpPkvkfvt 68 
                 +  F ++++fp +YP  pP+++ + 
  KKY23697.1 491 NTSFSFRISFPGTYPDLPPQIHGIA 515
                 568******************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 4944.94
//
Query:       KKY23698.1  [L=405]
Description: putative dna-directed rna polymerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00055   19.9   0.0     0.0015   18.5   0.0    1.8  1  Glyco_hydro_61  Glycosyl hydrolase family 61
  ------ inclusion threshold ------
       0.13   12.8   0.0       0.75   10.3   0.0    2.3  2  MG2             MG2 domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_61  Glycosyl hydrolase family 61
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.6e-07    0.0015     120     182 ..     128     185 ..      13     212 .. 0.61

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.6e-07
                     HCCTTCEEEEE--TTB-SEEEEEEEEEEE-TTTTSTT--EEEEEEEEEEEESS-SB.--EEGC CS
  Glyco_hydro_61 120 laengaklsvtiPaslapGeYllRhEiiALhsagskggaQfYpsCaqleVtgsgtalpevsfp 182
                       +  a+++++iP ++a+GeY      +A    +++g+ ++Y++Ca ++V+ ++++  +++ p
      KKY23698.1 128 NGSGAATFEFSIPDGIATGEYT-----LAWTWFNKVGNREMYMNCAPVTVSSGSSKRDNIKAP 185
                     3233489**************6.....68899999****************765532223333 PP

>> MG2  MG2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.53   4.8e+03      43      96 .]      83     107 ..      62     112 .. 0.54
   2 ?   10.3   0.0   8.4e-05      0.75      53      80 ..     125     152 ..     116     177 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.53
                 TTSSEEEEEEEEE-CTTEEEEEEE--TT--SEEEEEEEEECSTTT-EEEEEEEE CS
         MG2  43 pdgkevkelplatdetggaesefalpeaaklGeysvelsadsaeeslssgsfrV 96 
                  +g+   +l+l++d + +a+s+f                             +V
  KKY23698.1  83 VHGGGSCQLSLTKDREPTADSSF-----------------------------EV 107
                 34444444444445444555554.............................44 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 8.4e-05
                 EEE-CTTEEEEEEE--TT--SEEEEEEE CS
         MG2  53 latdetggaesefalpeaaklGeysvel 80 
                  + + +g a +ef +p++  +Gey++  
  KKY23698.1 125 ADPNGSGAATFEFSIPDGIATGEYTLAW 152
                 45677888*****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1273  (0.0710023); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 2725.98
//
Query:       KKY23699.1  [L=372]
Description: putative 60s ribosomal protein l4-a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-36  126.4   0.3    1.3e-36  126.1   0.3    1.1  1  Ribosomal_L4     Ribosomal protein L4/L1 family
    6.3e-28   96.6   1.4    8.3e-28   96.3   0.1    1.8  2  Ribos_L4_asso_C  60S ribosomal protein L4 C-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L4  Ribosomal protein L4/L1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.1   0.3   1.5e-40   1.3e-36       3     191 ..      23     267 ..      21     268 .. 0.92

  Alignments for each domain:
  == domain 1  score: 126.1 bits;  conditional E-value: 1.5e-40
                   E-HHHHSS---HHHHHHHHHHHHHSS-EE-----.-TTTSS---S-SS-SSSSSS---S-TT............STTSTT---SS---S.EEHHHHH CS
  Ribosomal_L4   3 LspkvFaapirrdlihravvaylanrrqgtastk.arsevsgsgrklwkQKGtGrARvgsir............spiargGgvahgpkperdystkl 86 
                   L p vF+apir d+++ +++ + +n+rq++a +  a+ ++s+  +++++  G++ AR+++++             +++r+G+++ ++k++r++++k+
    KKY23699.1  23 L-PRVFSAPIRADIVQTVHTGMAKNKRQPYAVSEkAGEQTSA--ESWGT--GRAVARIPRVSgggthragqaafGNQCRSGRMFAPTKVWRKWHQKI 114
                   6.99***************************9888*******..6****..********************************************** PP

                   HHHHHHHHHHHHHHHHHHTT-EEEES....---.-S...............S--HHHHHHHHHHTT-..........................TTSS CS
  Ribosomal_L4  87 nkKvrrlAlrsaLsakakqglllvvd....nleple...............esktkelvellkklgl..........................ksks 138
                   n  ++r A +sa++a    +lll+++     +                     kt+ +v+llk++g+                          ++++
    KKY23699.1 115 NVGQKRFATASAIAASSVPSLLLARGhkisTV---SevplviasktfegeaLVKTSAAVALLKAIGAgpdivkvqksrklragkgkmrgrryrQRRG 208
                   **************************744422...2455668777777877888**********99999999999999999999999999999999* PP

                   EEEEES..SSSCHHHHHHTT-TTEEEEESTT--CHHHHHSSE....EEEEHHHHHHHHH CS
  Ribosomal_L4 139 vLivvs..ekdenlvlaarnlpgvevieveslnvydllkadk....vvitksaveklee 191
                   +L+v++   + + lv+a+rn+pgve+ +v sln+++l+++ +    +++t sa+e l+e
    KKY23699.1 209 PLVVYNpdVDGKSLVKAFRNIPGVETSSVFSLNLLQLAPGGHlgrfIIWTSSAFEALDE 267
                   *****96524679********************************************97 PP

>> Ribos_L4_asso_C  60S ribosomal protein L4 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.67     6e+03      27      46 ..     190     210 ..     180     212 .. 0.68
   2 !   96.3   0.1   9.2e-32   8.3e-28       1      73 [.     280     354 ..     280     357 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.67
  Ribos_L4_asso_C  27 vlrpakkekkkkr.vqkkNPL 46 
                       lr+ k++ + +r  q++ PL
       KKY23699.1 190 KLRAGKGKMRGRRyRQRRGPL 210
                      577777766666677777777 PP

  == domain 2  score: 96.3 bits;  conditional E-value: 9.2e-32
  Ribos_L4_asso_C   1 kgynLPrpkmtnaDlsRiinSdeiqsvlrpakkekkkkr..vqkkNPLknkqvmlrLNPyakvlrraallaqkkr 73 
                      k++ LP+++++naD++R+inS eiqsvl+++k+ +++kr  v+kkNPL+n+qv+lrLNPya ++++++l+++ ++
       KKY23699.1 280 KDFLLPSNVVANADITRLINSTEIQSVLNEPKGYSTTKRgvVLKKNPLRNRQVLLRLNPYAGAFSKEKLGQKSES 354
                      79***********************************999*****************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2560.37
//
Query:       KKY23700.1  [L=619]
Description: putative c6 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-19   68.0   2.1    1.1e-18   67.3   2.1    1.3  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   2.1     6e-23   1.1e-18       2     256 ..     122     376 ..     121     387 .. 0.85

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 6e-23
  Fungal_trans   2 drffsnfh.pqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsL 97 
                   d++f+n++   + ++ ++ f+++   ++ + +++++  l+++ la+G+ fs  + + s+  +   +        +  +++    s    sl+ +q+ 
    KKY23700.1 122 DLYFDNINsATYCMFPRDPFMRWC--QECRTKDEKDKMLVYSLLAMGSIFSTRPGRHSTVRKLLGV--------AEYAVT---SSFGKFSLQLVQAR 205
                   789999998999999999999999..99999999***********************988877755........444444...34445559****** PP

  Fungal_trans  98 lllelyektssdralherhhgvavrlarslgLhrnpsyvgkks......lwklweeeaesrrRlwwaaFylDktialklGrpp..llddsqinlp.. 184
                   l+l+l+++ +++  +++ ++g  +r a  ++L+ ++   + ++      +++ +   +e+ rR++w+aF++D++  ++ G+ +  ++dd  i+lp  
    KKY23700.1 206 LILALVHFSLGNSMKAWDYCGAGIRSACGMKLNVEEGIQNMTTeenldyWFNASTL-RECHRRTFWSAFIMDRFNGFCSGHISilHIDDCLIRLPal 301
                   ***************************************98889*99988888888.**************************65588888888877 PP

  Fungal_trans 185 LPcddddlwesddaseetlvetk....lsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlqseklswve 256
                     c+d+ ++ s +  + +++ ++    + ++++       l+++++++++++  l+   + ++  ++q + +    
    KKY23700.1 302 ESCYDSQVECSPTPFFRNNLIDPtlcaPAQSPSTIGSMGHLVTISSLWGEVLAFLYRSAYISSSLYSQ-HYDVHYS 376
                   77888888889999999999888****999999999**************888888888888888888.3333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.53
# Mc/sec: 3513.95
//
Query:       KKY23701.1  [L=546]
Description: putative mst3-like protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-68  230.1   0.0    5.6e-68  229.2   0.0    1.5  1  Pkinase         Protein kinase domain
    3.3e-46  157.7   0.0    6.2e-46  156.8   0.0    1.4  1  Pkinase_Tyr     Protein tyrosine kinase
    4.1e-06   25.8   0.6      2e-05   23.5   0.0    2.1  2  Pkinase_fungal  Fungal protein kinase
    0.00077   18.9   0.0     0.0025   17.2   0.0    1.8  2  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.022   14.6   0.3      0.071   13.0   0.2    1.8  2  Apolipoprotein  Apolipoprotein A1/A4/E domain
       0.13   12.4   0.2          2    8.5   0.2    2.3  2  Lipase_GDSL_3   GDSL-like Lipase/Acylhydrolase family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.2   0.0   1.9e-71   5.6e-68       4     264 .]       2     250 ..       1     250 [. 0.92

  Alignments for each domain:
  == domain 1  score: 229.2 bits;  conditional E-value: 1.9e-71
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHH CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeeakk 102
                 le+lG+GsfG+Vyka+e++tg+ivA+K+i+ e+ +++ + ++++Ei++l ++ +p++ ++  +f +  +l++v+e++ gg+ +dll+  g ++e+++  
  KKY23701.1   2 LEELGSGSFGTVYKAIERSTGEIVAIKHIDLESSEDDIQ-EIQQEISVLSTCASPYVTQYRTSFLRGYKLWIVMEFLGGGSCQDLLK-PGPFNEAHIAI 98 
                 589*****************************9999775.9*********************************************7.699******** PP

                 HHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTS CS
     Pkinase 103 iakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsge 200
                 +++++l gl+ylH++g iHrD+K +N+L+++ g++K++DFG+a++l++ ++  ++fvgt+ ++APEv+++ +y+ k+D+WslG++ +el++g+pp +  
  KKY23701.1  99 VCRELLLGLNYLHQEGKIHRDVKAANVLLSQAGKVKLADFGVAAQLTNIKSqRNTFVGTPFWMAPEVIQQAGYDFKADIWSLGITAMELVNGEPPNA-- 195
                 **********************************************998877********************************************9.. PP

                 SHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 201 kgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                          ++ ++ ++ i +       e ++ s+++kd++ ++l kdp +R+ta+ell+h+++
  KKY23701.1 196 --------STHPMKVLFLIPK-APAPRLEGNNYSKDFKDFVASCLIKDPDRRPTAKELLRHRFI 250
                 ........2233333333332.23445567889****************************996 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.8   0.0   2.1e-49   6.2e-46       4     257 ..       2     246 ..       1     248 [. 0.93

  Alignments for each domain:
  == domain 1  score: 156.8 bits;  conditional E-value: 2.1e-49
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSB CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekeklt 101
                   ++lG+G+fG+V+++  +    ++ + Va+K ++ e++e++ +e+ +e+++++++  p + ++    +++ +l+iv+e++ gG+ ++ L+     +++
   KKY23701.1   2 LEELGSGSFGTVYKAIER----STGEIVAIKHIDLESSEDDIQEIQQEISVLSTCASPYVTQYRTSFLRGYKLWIVMEFLGGGSCQDLLKPG---PFN 92 
                  589*************99....89999**************************************************************987...9** PP

                  HHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 102 lkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEif 199
                    ++  ++ ++  G++yL+++  +Hrd+ a NvLls+  +vk++DfG+a ++  ++  +++++      WmapE++++  +  k+D+Ws G++ +E++
   KKY23701.1  93 EAHIAIVCRELLLGLNYLHQEGKIHRDVKAANVLLSQAGKVKLADFGVAAQL--TNIKSQRNTFVGTPFWMAPEVIQQAGYDFKADIWSLGITAMELV 188
                  ****************************************************..444455555667789***************************** PP

                  TTSSGTTTTSHHHHHHHHH.HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 200 tlgespypglkneevlekl.kegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  + ge p ++ ++++vl  + k+     + ++ ++++++++ +c+ +dp++Rpt +el++
   KKY23701.1 189 N-GEPPNASTHPMKVLFLIpKAPAPRLEGNNYSKDFKDFVASCLIKDPDRRPTAKELLR 246
                  9.*****************76656566778899*********************99975 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   6.8e-09     2e-05     312     397 ..     100     177 ..      93     180 .. 0.87
   2 ?   -0.9   0.9      0.18   5.3e+02     217     288 ..     312     388 ..     277     448 .. 0.61

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 6.8e-09
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhDL 397
                     +r+ + g++ L+ + g +HrD+ + N+l+      +  k  L+D+ +a +l +   +s++++ +GT+ +ma ev+++    +  D+
      KKY23701.1 100 CRELLLGLNYLH-QEGKIHRDVKAANVLLS-----QAGKVKLADFGVAAQLTN--IKSQRNTFVGTPFWMAPEVIQQAGYDFKADI 177
                     6777889999**.99999************.....778999***********5..6677789**************8878888777 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.18
  Pkinase_fungal 217 diaeiRkgldvtkaekfrskrkvvsssssqe.lsskaevklkksesskkvekrsvdssv....stskrsrlenrvhr 288
                     + ++ R++l+ +kae+++++++++ +  s +  ++k+++   ++ ss+ ++  ++ +++    s+s r+ +++r  +
      KKY23701.1 312 SHTQKRRKLTAQKAEEIQEQATAMMEGLSIAaETPKKKIVVPEEMSSTMRRIPEIAQDSpvqhSPSVRKATKKRYSS 388
                     44667777878877665555444443333334333333333333333333333333333334444444444444443 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.75   2.2e+03      20      62 ..       5      45 ..       3      70 .. 0.68
   2 !   17.2   0.0   8.2e-07    0.0025     143     249 ..      98     193 ..      83     201 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.75
  Kinase-like 20 lkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeq 62
                 l+ g ++ v+++ +  tge +a+k   l  e s+ d+++++++
   KKY23701.1  5 LGSGSFGTVYKAIERSTGEIVAIKHIDL--ESSEDDIQEIQQE 45
                 6677888999999999999988887655..4456666665554 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 8.2e-07
  Kinase-like 143 tiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvr...agtkvvlseve.kgfaPpEllgsrggytrknktkmthkldaWql 236
                  +++r ll l       +L+++g +h ++++ n+ll + g+++l +f+   +    + +     v    +  pE++ +         + + +k d W l
   KKY23701.1  98 IVCRELL-L----GLNYLHQEGKIHRDVKAANVLLSQAGKVKLADFGVAAQltnIKSQRN-TFVGtPFWMAPEVIQQ---------AGYDFKADIWSL 180
                  5555555.2....2479****************************985433000333333.2333122345566555.........67899******* PP

  Kinase-like 237 GlviyriwclklP 249
                  G+++  +   + P
   KKY23701.1 181 GITAMELVNGEPP 193
                  **99877655555 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.1   3.4e+03     124     136 ..      33      48 ..      14      64 .. 0.47
   2 ?   13.0   0.2   2.4e-05     0.071      75     110 ..     310     345 ..     302     365 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.1
                     HHHH...HHHHHHHHH CS
  Apolipoprotein 124 eelr...qklaerlee 136
                     e+     q++++++  
      KKY23701.1  33 ESSEddiQEIQQEISV 48 
                     4444222233333333 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.4e-05
                     CCHHHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHH CS
  Apolipoprotein  75 lapyteelrerlaadaeelqeqlavyaeelrerler 110
                     ++++t+++r+  a++aee+qeq ++ +e+l   +e+
      KKY23701.1 310 ISSHTQKRRKLTAQKAEEIQEQATAMMEGLSIAAET 345
                     789**************************9988887 PP

>> Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2   0.00066         2      61     130 ..     296     384 ..     283     391 .. 0.76
   2 ?    1.0   0.0      0.14   4.1e+02     114     157 ..     465     508 ..     453     514 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00066
  Lipase_GDSL_3  61 svfvldllpN.................asaeeirerleyfvk..tlrkahPktpillvedlsttkglvdeklekeveaknkaleelvkk 130
                    +++v+d++                   ++aeei+e+++ +++   ++++ Pk+ i++ e++s t++ + e +++   ++   ++++ kk
     KKY23701.1 296 DAWVFDTVKAptiaisshtqkrrkltaQKAEEIQEQATAMMEglSIAAETPKKKIVVPEEMSSTMRRIPEIAQDSPVQHSPSVRKATKK 384
                    666666666666666666667777776889*******999983357899*****************99998888877777777777665 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.14
  Lipase_GDSL_3 114 ekeveaknkaleelvkklkkekekklylisskellgkdeeatvd 157
                    +++++++ + l+e +  l++e+ +++y+i +  + + +++a + 
     KKY23701.1 465 DDNKREAISRLAECFSDLEQEDPEGMYHIVKLMVEKMQGDAKLA 508
                    556677778899****************9887665666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.48
# Mc/sec: 3424.17
//
Query:       KKY23702.1  [L=565]
Description: hypothetical protein UCRPC4_g02799 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-11   45.2   0.0    1.5e-11   45.2   0.0    3.3  3  Apc15p       Apc15p protein
  ------ inclusion threshold ------
      0.026   13.2  10.7      0.039   12.6  10.7    1.2  1  TFIIF_alpha  Transcription initiation factor IIF, alpha subun


Domain annotation for each model (and alignments):
>> Apc15p  Apc15p protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   1.7e-15   1.5e-11      46     123 ..      32     110 ..      11     111 .. 0.70
   2 ?   -5.5   6.6         2   1.8e+04      26      53 ..     346     377 ..     309     416 .. 0.54
   3 ?   -1.2   0.4      0.38   3.4e+03      35      49 ..     489     503 ..     429     522 .. 0.67

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 1.7e-15
      Apc15p  46 dqkksrrsgyapplsaynaieespyyp....rggkldelrmeeeqmerrlkaIrnlGsnwlkPiGvnKTleqireerreaee 123
                  +++s+++  +pp  +     +    p     + +l+ l   e+++e+r++aI+++G++w+kP+G+ KT+   ree+ e+ee
  KKY23702.1  32 LNSSSDHTTGHPPHRNRREPKSA---PlnkpASLSLAALAQSEDLIEHRKNAIATFGYSWIKPAGCTKTMLGRREEELEREE 110
                 33333444444444433333333...1344577889*****************************************99997 PP

  == domain 2  score: -5.5 bits;  conditional E-value: 2
      Apc15p  26 ernkkl.nngnatn...kakernedqkksrrs 53 
                  +++++  ++++ +    ++  + +++ s+r+
  KKY23702.1 346 PHQQRGpLPQQNEPrsrRSWFSTSHRTPSNRH 377
                 11111132222222223334444444444444 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.38
      Apc15p  35 natnkakernedqkk 49 
                 + +++++e+++dq++
  KKY23702.1 489 MVMTQRQEQRQDQQR 503
                 222234444444444 PP

>> TFIIF_alpha  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6  10.7   4.3e-06     0.039     213     457 ..     114     372 ..      63     380 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.3e-06
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX............. CS
  TFIIF_alpha 213 kikdkegddeedsdesdkgdededeekkkkKkkkkaknkkkldddkkkkrgsdddadeydsddGddegrEldyisDdsasendpe............. 297
                  +i++ e+ +   ++  d+    e+e++     +  ++++++lddd       d dad+ + d+Gddeg E  ++  d  +++d               
   KKY23702.1 114 QIREAEEAEMRGGTRFDEAALMEGEGEG----EDDGLDQRDLDDDV-----PDADADQTNLDEGDDEGNETGFTAEDLGEGEDTGfitgdqtgpidmt 202
                  4666666666666666666555555544....23466777766666.....3557777779********************9999************* PP

                  ............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXX..XXXXXXXXXXXXXXXXXXXXXXXX CS
  TFIIF_alpha 298 ............eredkkseEeeekkeieqdedeeekeeekkeeegklskkkkkakklkkkkkekdkkdSdd..eedsddsDideedsvslvkakKkk 381
                               + d++s E+   + +++d+d +e ++ ++e+e  +s + +++++ + +++   +++     +eds+  D+d     +++ ++  +
   KKY23702.1 203 ameeedlmmggdLDDDVPSAEQSRLEYDDNDGDGGEWQHTDTEDE-FESSSIMEPPRSQIHQRSARRRSTGIgvGEDSEMMDMDI--THATIDDSY-T 296
                  **********98677889999999999888888888887776655.899999**9999988888766655441145555555555..444555555.3 PP

                  XXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXX...XXXXXXXXXXXXXXXXXXXXXXXX.XXX CS
  TFIIF_alpha 382 ekkkeekvdsnessagnsrparpspeqkdskskrkaa.seeskspvsvpaKklktenapkssskkslpqtvskskss 457
                   + +  + +     +gn   a+p+ ++ +++s+  a  +++++ p+s  + + +    p+ +  +s+ + +s s+ +
   KKY23702.1 297 GPSSSIPQNTHRMISGN-AFATPPHSHPSASSTSPAHiQNQTHYPSSINNPHQQRGPLPQQNEPRSRRSWFSTSHRT 372
                  33444333333222222.23333333333333333323555666666666665666666666556666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 3606.79
//
Query:       KKY23703.1  [L=562]
Description: putative d-lactate dehydrogenase 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-63  212.8   0.0    8.2e-63  212.3   0.0    1.2  1  FAD-oxidase_C  FAD linked oxidases, C-terminal domain
    5.2e-35  120.2   0.1    8.4e-35  119.5   0.1    1.3  1  FAD_binding_4  FAD binding domain
  ------ inclusion threshold ------
       0.06   13.2   0.0       0.13   12.1   0.0    1.5  1  LemA           LemA family


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.3   0.0   1.4e-66   8.2e-63       3     249 ..     309     559 ..     307     560 .. 0.99

  Alignments for each domain:
  == domain 1  score: 212.3 bits;  conditional E-value: 1.4e-66
                    SEEEEEEEEESSHHHHHHHHHHHHHH.T---SEEEEE-HHHHHHHHHTS-SSTTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT-EEEEE.. CS
  FAD-oxidase_C   3 earavalvafpsfeaavkavreiaqa.giipaalelmdkkaldlveatkgakkglpdeeealllvefegddeeeaeeelealveaileatgaadvl 97 
                    ++++va +++psfe++ ka+ e++ + g+i++a+elmd+++ ++v+++ g++ +l d+++++ l+e++g++++++ e+l+  +e+ +e+ +++d++
     KKY23703.1 309 KSTNVAYFGLPSFENVQKAFLEAKNQlGEILSAFELMDSQSQEFVHQVTGKSYPLSDPHPFYCLIETSGSNPDHDSEKLSSFLESVMESSIVTDGV 404
                    7899******************************************************************************************** PP

                    ........ETGGGGGGGGHHHHHHHHHCTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHH...........EEEEEEEEEETTEEEEEEEEEEE.. CS
  FAD-oxidase_C  98 vaqdeaeaealwkaRkaalpylrdallkagvavlseDtsvPvsrladlvrdikalldkyg...........levvlfgHagdgnlhlyilfdlade 182
                    +aqde++++ lw +R+++ +     + ++++  +++D s+P+++l+dlv +++ +l++ g           ++vv +gH+gd nlhl+i +++ d+
     KKY23703.1 405 LAQDETQIRTLWSWREGITE-----AIGHQGGTYKYDLSIPITKLYDLVLETRSRLKDLGlthptdpsypaIDVVGYGHMGDSNLHLNIPVRRYDK 495
                    ********************.....8999999**************************************************************** PP

                    --TT--THHHHHHHHHHHHTT-----------------------THHHHHHHHHHHH-TT--BSTT- CS
  FAD-oxidase_C 183 aeeeraeklvdevvdlavelgGsisgEHGvGldkkaylerekgeeglalmrriKaalDPkgiLNPgk 249
                    + e+++e++v+e+   + +++Gsis+EHGvGl+k+++l ++++e+ ++lm+++Ka++DPkgiL P+k
     KKY23703.1 496 KVEKALEPWVYEW---IQGVKGSISAEHGVGLAKREFLGYSRNEQSIELMKKLKAVFDPKGILMPYK 559
                    *************...*************************************************99 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   0.1   1.4e-38   8.4e-35       2     137 ..     133     269 ..     132     270 .. 0.98

  Alignments for each domain:
  == domain 1  score: 119.5 bits;  conditional E-value: 1.4e-38
                    EEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTC.SCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTC CS
  FAD_binding_4   2 aavvrpeseeevaaalrlaneaglpvlvrGgGssllgqav.atggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgi 96 
                    ++vv+p++ eev+ +l+++n++ l v+++Gg s+l+g+++  ++ +v++l r+ +i+++d+ +g++++ aG++l+ ++++la+k  +++l+ g+  
     KKY23703.1 133 KLVVKPKTKEEVSQVLKYCNDNMLAVVPQGGNSGLVGGSIpVFDEIVINLGRMSQIRSFDPISGILVADAGCILEVVDNYLAEKSHIFPLDLGAKG 228
                    68*************************************999****************************************************** PP

                    GSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEE CS
  FAD_binding_4  97 pgtvGGaiatnagGygsekyGlirdnvlglevvladGevvr 137
                    ++ +GG+iatnagG +  +yG+++ nvlg+e+vl+dG++++
     KKY23703.1 229 SCQIGGNIATNAGGLRLLRYGSLHGNVLGVEAVLPDGTILD 269
                    **************************************985 PP

>> LemA  LemA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.1e-05      0.13      51      89 ..      51      89 ..      37      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.1e-05
        LemA 51 eekaeaenqlssalsrllavaEnYPdLkanenfleLqee 89
                +    ae++ls+  +++  ++++YPdLk +++f+eL+ e
  KKY23703.1 51 SPSDGAEDALSQPPKQIKYTTDSYPDLKRDSRFAELTPE 89
                55567999***************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3916.14
//
Query:       KKY23704.1  [L=2127]
Description: putative glutamate synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.2e-177  590.9   0.0   1.7e-177  590.4   0.0    1.2  1  GATase_2         Glutamine amidotransferases class-II
   4.2e-155  516.4   0.0   7.6e-155  515.6   0.0    1.4  1  Glu_synthase     Conserved region in glutamate synthase
   6.3e-114  380.2   0.0   1.5e-111  372.3   0.0    2.2  2  Glu_syn_central  Glutamate synthase central domain
    8.5e-83  276.6   3.4    1.4e-82  275.9   3.4    1.3  1  GXGXG            GXGXG motif
    1.2e-24   87.1   0.1    7.2e-24   84.5   0.1    2.2  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
    2.1e-21   75.8   0.1    4.4e-21   74.8   0.1    1.5  1  Fer4_20          Dihydroprymidine dehydrogenase domain II, 4F
      2e-07   31.1   0.1      8e-07   29.2   0.1    2.1  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
    2.2e-07   30.8   1.4    0.00099   18.8   0.5    2.6  2  DAO              FAD dependent oxidoreductase
    4.4e-06   27.2   0.4    0.00084   19.9   0.1    3.0  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
      8e-06   25.3   1.8       0.18   11.0   0.0    3.7  3  Pyr_redox_3      Pyridine nucleotide-disulphide oxidoreductas
    1.2e-05   24.8   0.3    2.5e-05   23.8   0.3    1.5  1  Amino_oxidase    Flavin containing amine oxidoreductase
    0.00015   21.0   0.1     0.0022   17.1   0.1    2.3  2  FAD_binding_2    FAD binding domain
    0.00037   19.9   0.4     0.0029   16.9   0.1    2.2  2  FAD_binding_3    FAD binding domain
    0.00038   19.3   0.3    0.00038   19.3   0.3    1.6  2  HI0933_like      HI0933-like protein
    0.00046   19.7   0.2    0.00098   18.6   0.2    1.5  1  FAD_oxidored     FAD dependent oxidoreductase
     0.0011   19.3   0.1        2.3    8.7   0.1    3.3  3  NAD_binding_7    Putative NAD(P)-binding
     0.0079   15.5   0.3       0.48    9.7   0.1    2.4  2  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.028   13.7   0.1      0.093   12.0   0.0    1.9  1  Thi4             Thi4 family
      0.061   12.4   0.3        1.6    7.7   0.1    2.4  2  Lycopene_cycl    Lycopene cyclase protein
      0.075   12.9   1.7        1.5    8.7   0.0    2.5  2  Rossmann-like    Rossmann-like domain
      0.087   11.2   0.1        3.2    6.1   0.0    2.6  3  FMO-like         Flavin-binding monooxygenase-like
        0.1   11.7   1.2       0.33   10.0   0.1    2.2  2  GIDA             Glucose inhibited division protein A
       0.15   11.1   0.7       0.41    9.6   0.4    1.8  2  FMN_dh           FMN-dependent dehydrogenase
       0.17   11.2   0.0       0.51    9.7   0.0    1.8  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
       0.79    9.8   2.9         22    5.1   0.0    3.4  3  Shikimate_DH     Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> GATase_2  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  590.4   0.0  2.3e-180  1.7e-177       1     420 []      53     485 ..      53     485 .. 0.98

  Alignments for each domain:
  == domain 1  score: 590.4 bits;  conditional E-value: 2.3e-180
                 -EEEEEE-SSS--BSHHHHHHHHHHHHGGGGS-B-TTSSSBSEEEEEEE--HHHHHHHHHH.TT-----GGG-EEEEEEE-SSHHHHHHHHHHHHHHHH CS
    GATase_2   1 CGvgfiaelkgkkshkivekalealenleHRGavgadektGDGaGillqiPdeflrkeake.kgielpeageyavgmlflpkdeekaeeakkileeive 98 
                 CGvgf a++kgk+shkiv++a ++l+n++HRGa+g+d+++GDGaG++++iP++f+ k++++ +g+elp  g+ya g+lf++ d+e  + a++ +e++++
  KKY23704.1  53 CGVGFAAHIKGKASHKIVSDARNLLCNMTHRGATGSDARDGDGAGVMTSIPHKFFVKNFAReTGFELPPVGQYAAGNLFFKPDTEMLKLATASFEKTAT 151
                 *******************************************************99987659************************************ PP

                 HTT-EEEEEEE--B-GGGS-HHHHHH--EEEEEEE..............E-TT---HHHHHHHHHHHHHHHGGG.....-BTTBEEEEEESSEEEEEES CS
    GATase_2  99 eeglevlgwRevpvdksvlgeaakesePsieqvfv..............ekkedlseeelerklyviRkriekeiakkkaekefYicslssrtivYkgl 183
                 e gl+ lgwRevp d+s lg aa+++eP i q fv              +++e++++ e+e+klyv+Rk +++  +    + +fYicsls+r+ivYkg+
  KKY23704.1 152 ELGLRTLGWREVPRDSSLLGPAALSREPIILQPFVvlasaygtgnkpdiTNPEEFDDIEFEKKLYVLRKSVTHDST---FKPWFYICSLSNRNIVYKGQ 247
                 ***********************************999999988877766666799*****************987...899***************** PP

                 S-GGGHHHHBHGGGSTT--BSEEEEEE---SSSS--GGGSSS-SSEEEEE--TTHHHHHHHHHHHCTT--BT-HH.HHHTC--S--TTS-HHHHHHHHH CS
    GATase_2 184 ltseqlkefykdlkdeelesalalvHsRfstntfPsWelaqPlRllaHnGEintlrGnknwmkareaelksellgdelekllPivneegsDsasldnvl 282
                 l++ q+ ++y+dl + ++e ++alvHsRfstntfPsW+++qPlR+laHnGEintlrGnknwm+are  lks+++gd++ekllPi++++gsDsa++dnv+
  KKY23704.1 248 LAPVQVYQYYHDLVSVDYEGHFALVHSRFSTNTFPSWDRSQPLRWLAHNGEINTLRGNKNWMRAREGILKSDFFGDDVEKLLPIIEDGGSDSAAFDNVM 346
                 *************************************************************************************************** PP

                 HHHHHTT.--HHHHHHHHS----TT-GGGTHHHHHHHHHHTTT-----SSEEEEEE-SSEEEEEE-TT--S--EEEEETT--EEEESSTTSS---GGGE CS
    GATase_2 283 ellvlsg.rslaealmlliPeawennksldkekkafyeyasalmepWDGPalivftdGkvvgavLDRnGLRPaRylvtkddlvvlasEvGvldleeeev 380
                 ellv++   sl+ea+ml++Peaw+ n+++d+ k+afye+a++lmepWDGPal++f+dG+++ga+LDRnGLRP+Ry++t+dd++++asEvG++ +e+e++
  KKY23704.1 347 ELLVMNRvLSLPEAVMLMVPEAWQGNAAMDPAKNAFYEWAACLMEPWDGPALFTFSDGRYCGANLDRNGLRPCRYYITDDDRIICASEVGTISIEPERI 445
                 ****99868****************************************************************************************** PP

                 EEEEE--TT-EEEEETTTTEEEEHHHHHHHHHTTS-HHHH CS
    GATase_2 381 vekgrlqPGrmllvdleegriledeeikkkiaskkpykew 420
                 ++kgrlqPG+mllvd+  gri++d+e+k+++++++ +++w
  KKY23704.1 446 IQKGRLQPGKMLLVDTVAGRIIDDTELKATVSQRQGFQQW 485
                 ***************************************9 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  515.6   0.0  1.1e-157  7.6e-155       3     367 ..     869    1236 ..     867    1237 .. 0.99

  Alignments for each domain:
  == domain 1  score: 515.6 bits;  conditional E-value: 1.1e-157
                    S-HHHHHHHHHHHHH---HHHHHHHHHHHTS.-S-SGGGGEEE--SS--.--GGGS--HHHHHTTEE---B-TTTS-HHHHHHHHHHHHHHT-B- CS
  Glu_synthase    3 neievikllqkavqveskesidkyrekleerevlkakrdlleldaaeealikleevepalkikkriltsamSyGalseeahealakamnrlgtks 97  
                    n++  i+ +q+av++++++s++ y+ +  e+++ +++r +l++d+++++ +++++vep+++i++r++t+amSyG++s+e+h++la+amnrlg+ks
    KKY23704.1  869 NDPVSIANIQDAVRTKNDKSYEAYSLSEYEQIKNCTLRGMLDFDFEQRQPVPIDQVEPWTEIVRRFVTGAMSYGSISMESHSTLAVAMNRLGGKS 963 
                    67778899***************************************999********************************************* PP

                    EETTS---GGGGS-----.....SEEEE-TT-TT--HHHHHH-SEEEEE---TTSTTS--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSH CS
  Glu_synthase   98 ntGEGGedeerlktakdv.....aikQvasgrFGvteeyLnnakaleikiaQGakpgeGgqlpgeKvseeiakiRkikpgvdliSPaphhdiysi 187 
                    ntGEGGed+er  + ++      aikQ+asgrFGvt++yL +a++l+ik+aQGakpgeGg+lpg+Kvs  ia++R+++pgv+liSP+phhdiysi
    KKY23704.1  964 NTGEGGEDPERSLKLDNGdtmrsAIKQIASGRFGVTSNYLADADELQIKMAQGAKPGEGGELPGHKVSGPIARTRHSTPGVGLISPPPHHDIYSI 1058
                    ***************99999*************************************************************************** PP

                    HHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEEHHHHHHB---HHHHHHHHHHHHHHTT-GGG-EEEEESS CS
  Glu_synthase  188 edlaqliedLkevnkeakvsvKlvaeagvetiaagvakanadiilidGleGGTGAspkssikhaGlPlelalaevdqtlkeeglrdrvsliadGg 282 
                    edl+qli+dLk++n++a+vsvKlv+e gv+++a+gvaka+ad+ili+G++GGTGAs+++ ik+aGlP+el+lae++qtl+ ++lr r ++++dG+
    KKY23704.1 1059 EDLKQLIYDLKCANPRARVSVKLVSEVGVGIVASGVAKARADHILISGHDGGTGASRWTGIKYAGLPWELGLAETHQTLVLNDLRGRTIVQTDGQ 1153
                    *********************************************************************************************** PP

                    --SHHHHHHHHHHT-SEEE-SHHHHHHTT--S---GGGT--TTSSS---HHHH..TT----HHHHHHHHHHHHHHHHHHHHHHT- CS
  Glu_synthase  283 lktgadvvkalalGAdavgigtaalialgCimarvChtntCpvGvatqdpeLrkrlkveekaervvnyikalaeevrellaalgi 367 
                    l+tg+dv++a +lGA+++g++t++lia+gCim+r+Ch+ntCpvG+atqdpeLr  +k+++++e+v+n+++++a+e+r ++a+lg 
    KKY23704.1 1154 LRTGRDVAIACLLGAEEWGFATTPLIAMGCIMMRKCHLNTCPVGIATQDPELR--KKFKGAPEHVINFFYYIANELRAIMAKLGL 1236
                    *****************************************************..9***************************97 PP

>> Glu_syn_central  Glutamate synthase central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  372.3   0.0  2.2e-114  1.5e-111       3     279 .]     521     806 ..     519     806 .. 0.95
   2 ?    5.6   0.0     0.013       9.7     167     265 ..    1122    1240 ..    1094    1246 .. 0.78

  Alignments for each domain:
  == domain 1  score: 372.3 bits;  conditional E-value: 2.2e-114
                      HHHTT--HHHHHHTHHHHHHHSS--EE-S---S--TTT-SS---GGGGEEE----SSS----TTTTGGG-B--EEES----SSS--GGGG-EEE CS
  Glu_syn_central   3 qkafgyteedlelllepmakegkeaigsmGdDtplavLsekprllydYFkqlfAqVTNPpiDpiREelvmsletllGkegnlleeeeeqakrlk 96 
                      + afgy+ e+++lll pm +++kea+gsmG+D+pla+L ++prlly+YF+q+fAqVTNPpiDpiRE++vmsle+++G++gnlle  e q++rl 
       KKY23704.1 521 LLAFGYSFEQVSLLLGPMGADSKEALGSMGNDAPLACLAQQPRLLYEYFRQMFAQVTNPPIDPIREAIVMSLECYVGPQGNLLEMGEGQCQRLL 614
                      679******************************************************************************************* PP

                      ESSSB--HHHHHHH.....HHSSS-EEEEESEE.......SHHHHHHHHHHHHHHHHHTT-SEEEEESS--STTEEE--HHHHHHHHHHHHHHT CS
  Glu_syn_central  97 lesPiLteeeleklkkl.kekkefkaktlditfeae....aleealerlceeaeeavregaeilvLsDrkvseervpipslLavgavhhhLvrk 185
                      l sP+L   e++++k++ + +++++++ +ditfe++    ++ +al+++ceea++a+++g ++l+LsDr++s++rvp+++lLa+g vhhhLvr+
       KKY23704.1 615 LPSPVLPIPEFNAIKNIsNVRSDWTVRLIDITFEKAkgvqGYYDALDNICEEATKAIENGDKVLILSDRATSADRVPVSALLATGMVHHHLVRN 708
                      *****************766789**********87765555***************************************************** PP

                      T-GGG-EEEEEESS--SHHHHHHHHHTT-SEEEEHHHHHHHHHHHTTTS-....----HHHHHHHHHHHHHHHHHHHTT--BHHHHHHS--EEE CS
  Glu_syn_central 186 glrtkvslvvesgearevhhfavllgyGadavnPylaletieklveegal....aeeeleknyrkavekGllKimskmGistlqSYkgaqifea 275
                      + r+k++lvve++earevhh++vl+gyGada+nPyla+e++ k+ +e+ +    +++++ +ny+ +++ G+lK+mskmGistlqSYkgaqifea
       KKY23704.1 709 RWRSKAALVVETAEAREVHHMCVLVGYGADAINPYLAMECLLKMNREKLIkknlTDDRIIANYKASCDGGILKVMSKMGISTLQSYKGAQIFEA 802
                      *****************************************9999999764444666666********************************** PP

                      SSB- CS
  Glu_syn_central 276 vGls 279
                      +G++
       KKY23704.1 803 LGID 806
                      **95 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.013
                       EE--HHHHHHHHHHHHHHTT-GGG-EEEEEESS--SHHHHHHHHHTT-S....EEEEHHHHHHHHHHHTTT.........S-.......... CS
  Glu_syn_central  167 vpipslLavgavhhhLvrkglrtkvslvvesgearevhhfavllgyGad....avnPylaletieklveeg.........al.......... 235 
                       + +p  L ++  h++Lv ++lr ++ +v   g++r+  ++a+ + +Ga+    a +P +a+ +i  ++++          a+          
       KKY23704.1 1122 AGLPWELGLAETHQTLVLNDLRGRT-IVQTDGQLRTGRDVAIACLLGAEewgfATTPLIAMGCI--MMRKChlntcpvgiATqdpelrkkfk 1210
                       55777888999***********986.88899*****************8777799********9..44444344444444114444443333 PP

                       ----HH....HHHHHHHHHHHHHHHHHTT--BHH CS
  Glu_syn_central  236 aeeele....knyrkavekGllKimskmGistlq 265 
                            +     n+   + + l  im+k+G+ t++
       KKY23704.1 1211 G----ApehvINFFYYIANELRAIMAKLGLRTIN 1240
                       2....133458999999************99986 PP

>> GXGXG  GXGXG motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.9   3.4   1.9e-85   1.4e-82       2     188 ..    1318    1504 ..    1317    1506 .. 0.98

  Alignments for each domain:
  == domain 1  score: 275.9 bits;  conditional E-value: 1.9e-85
                  EE-TT--STTHHHHHHHHHHHTTT---.-EEEEEEEEEE-TTTTTT--TTEEEEEEEEE-STTTTT-ESSEEEEE--TT-SS-GGGSB-S-SSTTTT CS
       GXGXG    2 eirnldrsvgtilsneiakrygeeglpedtikiklkGsaGqslgaflakGltleleGdandyvGkglsgGkivikpskeskfkaeeniivGnvvlyg 98  
                  ++ n+dr++g++ls++i+kryge+glp+dti+++lkGsaGqs+g  la G+tleleGd+ndyvGk lsgG+++i+p++ + +kaeen++vGnv+lyg
  KKY23704.1 1318 DVVNTDRTLGATLSYQISKRYGEAGLPQDTIHVNLKGSAGQSFGSSLAPGVTLELEGDSNDYVGKLLSGGRLIIYPPRGAVYKAEENVLVGNVCLYG 1414
                  689********************************************************************************************** PP

                  --SEEEEESSB--SSTTTT-SS-EEEESEB-SSTTTT-EEEEEEE-S-B-SSBTTT--EEEEEEE-SSSTHHHHB-TTT-EEEES-SHHH CS
       GXGXG   99 atgGklfirgkageRfavrnsgatavvegvgdhgceYmtGGvvvvLgktgrnfaaGmsgGiayvldedekfekklnkelvelekvedeee 188 
                  at+G++++rg a+eRfavrnsgatavvegvgdhgceYmtGG+v vLg+tgrnfaaGmsgGiayvld++++f++k+n+e+ve++ +ed++e
  KKY23704.1 1415 ATSGTCYFRGVAAERFAVRNSGATAVVEGVGDHGCEYMTGGRVLVLGTTGRNFAAGMSGGIAYVLDMNQDFHSKVNMEMVEVSGIEDPSE 1504
                  ************************************************************************************999876 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.1     1e-26   7.2e-24       1     280 [.    1759    2072 ..    1759    2086 .. 0.72

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 1e-26
                   CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHH.CCCCHCCTCEEEEESCEEEEETEEECTCE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2    1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeiasevvkklnqg.ielllgeevvkidpgkkkvklekkkegde 95  
                   k+v++iG+GpAGlaaa +l++ag+ vt++e +    +   ll + + +++ d++++++ v+ + ++ i+++++    ++ p++ +v l  +++   
   KKY23704.1 1759 KKVAIIGSGPAGLAAADQLNRAGHLVTVYE-RADRAG--GLLMYGIPNMKLDKRVVQRRVDFMAAEgIRFVTN---CAVGPDE-EVSLHSLRK--- 1844
                   58***************************5.333333..3555789999999998885555555555999999...8888999.999977664... PP

                   EEEEESEEEE---E.EE-BCTCTTC..............TTBEECCSECHHHHHHCCSS-T...........SEEEEES-SHHHHHHHHHHHHHT- CS
                   xxxxxxxxxxxxxx.xxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   96 ekiaydklvlAtGs.sprdlgipGv.............aenvgklvrtldsaealklkllp...........krivvvGgGyiGvElAaalaklgk 166 
                      + d++++AtG+  +rdl+ipG              +             +  +l   +           k+++v+GgG +G ++ ++  + g+
   KKY23704.1 1845 ---ENDAVIIATGAtVARDLKIPGResegihfamqflhK-------------NTKSLLDSEladdayisakdKNVIVIGGGDTGNDCIGTSVRHGA 1924
                   ...56********878999******54444444444321.............2111111113456666666689****************999988 PP

                   E.EEEEESSSSSS..TTS-...HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEE.EEETTSCE.............................E CS
                   x.xxxxxxxxxxx..xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx.............................x RF
  Pyr_redox_2  167 e.vtlveardrll..rald...kelsaaleealekeGvevklgtsvkeidgngekle.vvledgee.............................i 226 
                   + v+  e ++++   ra d   +++ ++++    +  v+ ++g  + e+   ++  + v++++g++                             +
   KKY23704.1 1925 KsVVNFELLPQPPaeRARDnpwPQWPRIYRVDYGHTEVKQHMGRDPREFCIMSK--DfVIDDNGHVkgintqrvewtksatggwdmkhvegseqfF 2018
                   667766666666555444444466666777777777777777777777776666..335666666666666666666666777777777777788* PP

                   EESEEEE-S-E.EES-HHCSHCCT-EEEETTEEE--TTS.BESSTTEEE-GGGCTE CS
                   xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
  Pyr_redox_2  227 dadlvvvavGv.rpstelleeklglelderggivvdefl.rtnvpgiyaiGDvagg 280 
                   +a+lv+++ G+  p++++l     +e d r  i++ + +  tn+pg++a+GD+  g
   KKY23704.1 2019 PAELVLLSMGFlGPEDRIL--GNDVERDARKNIKTPKGQyDTNIPGVFAAGDCRRG 2072
                   **********736777777..678*********77665549************933 PP

>> Fer4_20  Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.1   6.1e-24   4.4e-21       1     111 [.    1636    1745 ..    1636    1747 .. 0.93

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 6.1e-24
                  HTTS-S-SB----HHHHHHHHTT----TT-HHHH..CSTT---HHHHHHHHHTT-HHHHHHHHHHH-S-HHHHHHHS-GGGTGCCS-GGGTTB.--- CS
     Fer4_20    1 raknfkevalglteeealeeAsRClqCkkapcvk..gCPveidipefikkiaegnleeaakiiketnslpavcgrvCpqeelCegaCvlekkgkepv 95  
                  r+k+++e++++l+e+e + +++RC++C  + c++  gCP+++ ip++ + + ++++++a++ +  tn++p+ +grvCp    CegaCvl+ ++ +pv
  KKY23704.1 1636 RTKDWAELSSRLSEDELKYQSARCMDCGVPFCQSdtGCPISNIIPKWNELVFQNQWKDALNRLLMTNNFPEFTGRVCPAP--CEGACVLGINE-DPV 1729
                  578999**************************96559*****************************************99..*******9777.9** PP

                  -HHHHHHHHHHHHHHT CS
     Fer4_20   96 aigklerfvadaaree 111 
                   i+++e  ++d   e+
  KKY23704.1 1730 GIKSIECAIIDRGFEM 1745
                  *******999987776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.1   1.1e-09     8e-07       1      34 [.    1763    1796 ..    1763    1811 .. 0.95

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 1.1e-09
                     EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGG CS
  NAD_binding_8    1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGr 34  
                     I+G+G +Gl+aA  L +ag+ v+++e++dr GG 
     KKY23704.1 1763 IIGSGPAGLAAADQLNRAGHLVTVYERADRAGGL 1796
                     9*******************************95 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.5   1.4e-06   0.00099       1      33 [.    1760    1794 ..    1760    1796 .. 0.94
   2 !   10.2   0.0   0.00055      0.39     154     271 ..    1816    1926 ..    1807    1991 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.4e-06
                  EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO    1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiag 33  
                  +v+iiG+G +Gl++A +L r+g  Vt++e++d+ag
  KKY23704.1 1760 KVAIIGSGPAGLAAADQLNRAGhlVTVYERADRAG 1794
                  59****************99999********9988 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00055
                  HHHHHTT-EEEESECEEEEEEEETCEEEEE.EECTEEEEEEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEET CS
         DAO  154 raaealGveilegtevtgleeedgkvwgve.rttpgendaadavVnaaGawsdllgllkeldlpispvrgqvlvlkplseklvspaailpvpetddd 249 
                  + ++a G+++++++ v   +ee   v+    r      +  dav++a+Ga +  +   ++l++p +   g +++++ l++      +   ++  ++ 
  KKY23704.1 1816 DFMAAEGIRFVTNCAVG-PDEE---VSLHSlR---K--EN-DAVIIATGATV--A---RDLKIPGRESEGIHFAMQFLHK------NTKSLL-DSEL 1890
                  56789999*****8885.4332...3333122...2..24.99******995..6...7776677888888888844444......334444.6777 PP

                  TTTEEEEEETTSEEEEEESSE..............E CS
         DAO  250 grgvyvtprkdgrvlvGgtad..............e 271 
                  +++ y+ +  ++ +++Gg ++               
  KKY23704.1 1891 ADDAYISAKDKNVIVIGGGDTgndcigtsvrhgakS 1926
                  888899998777777799886666666655444441 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   1.2e-06   0.00084       1      63 [.    1760    1831 ..    1760    1838 .. 0.83
   2 ?    4.2   0.0     0.089        64       1      24 [.    1902    1925 ..    1902    1936 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.2e-06
                  EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.........TTSSHHHHHHHHHHHHHTTEEEECSEEE CS
   Pyr_redox    1 kvvvvGgGyiglElAgalaelgkkVtvversdkll.........rllDeeaskilqeklekngievllntkv 63  
                  kv+++G+G  gl +A  l++ g+ Vtv er+d+            +lD+ + ++  + + ++gi++++n  v
  KKY23704.1 1760 KVAIIGSGPAGLAAADQLNRAGHLVTVYERADRAGgllmygipnMKLDKRVVQRRVDFMAAEGIRFVTNCAV 1831
                  79******************************9653323434344678888888899999999999999766 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.089
                  EEEEECSSHHHHHHHHHHHHTTSE CS
   Pyr_redox    1 kvvvvGgGyiglElAgalaelgkk 24  
                  +v+v+GgG++g ++ g+  ++g+k
  KKY23704.1 1902 NVIVIGGGDTGNDCIGTSVRHGAK 1925
                  599*********999998888854 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00025      0.18       2      30 ..    1763    1790 ..    1762    1818 .. 0.85
   2 !    5.9   0.4    0.0091       6.5     127     189 ..    1848    1925 ..    1835    1931 .. 0.65
   3 ?    3.6   0.0     0.046        33     225     305 .]    1986    2067 ..    1975    2067 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00025
  Pyr_redox_3    2 IiGaGPaGlaaaielkkagledylilEkg 30  
                   IiG GPaGlaaa +l++ag   +++ E++
   KKY23704.1 1763 IIGSGPAGLAAADQLNRAGH-LVTVYERA 1790
                   9******************9.58898887 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0091
  Pyr_redox_3  127 kviiAtGefdkPnklnipGeeklvkhyskv................kefhkyagqkvvViGgknSavDaAlelvrkgae 189 
                    viiAtG     + l+ipG e+  +h++                  +++   ++++v+ViGg++++ D     vr+ga+
   KKY23704.1 1848 AVIIATGA-TVARDLKIPGRESEGIHFAMQflhkntkslldseladDAYISAKDKNVIVIGGGDTGNDCIGTSVRHGAK 1925
                   57777777.77777777777765555432212211222222222213344567999************99999999886 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.046
  Pyr_redox_3  225 ekikvlfnaevkeikekeeeykvktedgkkvevkddvvla.tGykpdlsflkkslfeldedgrpvlteeteetnvpglflaG 305 
                   +++k + +++v+  k  +  +++k+ +g++     + vl+ +G+    + +  + +e+d+ + ++  + + +tn+pg+f aG
   KKY23704.1 1986 GHVKGINTQRVEWTKSATGGWDMKHVEGSEQFFPAELVLLsMGFLGPEDRILGNDVERDARKNIKTPKGQYDTNIPGVFAAG 2067
                   556666777777777788888888888877777778787779***99999888999999*********************99 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.3   3.5e-08   2.5e-05       2      29 ..    1769    1796 ..    1768    1799 .. 0.95

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 3.5e-08
                     HHHHHHHHHHHTTEEEEEEESSSSSBTT CS
  Amino_oxidase    2 aGLaaArqLlsaGfdVtvlEardrvGGR 29  
                     aGLaaA qL +aG+ Vtv+E  dr+GG 
     KKY23704.1 1769 AGLAAADQLNRAGHLVTVYERADRAGGL 1796
                     9**************************6 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   3.1e-06    0.0022       2      36 ..    1761    1795 ..    1760    1814 .. 0.92
   2 ?    1.0   0.0      0.24   1.7e+02     387     410 ..    2055    2081 ..    2042    2085 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.1e-06
                     EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS CS
  FAD_binding_2    2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgg 36  
                     v +iGsG AGLaAA ++++aG+ v+v e +++ gg
     KKY23704.1 1761 VAIIGSGPAGLAAADQLNRAGHLVTVYERADRAGG 1795
                     89**************************9999776 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.24
                     TEEESSBTEEE-STCE...ESSSSTTS CS
  FAD_binding_2  387 adgqpipGLYAaGeva...aggvhgan 410 
                     + +++ipG +AaG +    + +v g+n
     KKY23704.1 2055 QYDTNIPGVFAAGDCRrgqSLIVWGIN 2081
                     55899**********955444555555 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.6   4.3e+02     150     190 ..     764     805 ..     755     821 .. 0.81
   2 !   16.9   0.1     4e-06    0.0029       3      34 ..    1760    1791 ..    1759    1795 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.6
                    EEEEEEEEEEE--GTT-HHHHHHTGG.EEEEEEEEEEEEEEE CS
  FAD_binding_3 150 eetvrakYlvGaDGgrStvrktlgie.fegeetvyeagvldv 190
                    + ++ a+Y + +DGg  +v +++gi+ +++ ++  +++ l++
     KKY23704.1 764 DDRIIANYKASCDGGILKVMSKMGIStLQSYKGAQIFEALGI 805
                    56899*******************997777777767766665 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 4e-06
                     EEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3    3 dVlIVGaGpaGlmlallLseaGvrvvlvekrs 34  
                     +V+I+G+GpaGl +a  L +aG  v++ e+ +
     KKY23704.1 1760 KVAIIGSGPAGLAAADQLNRAGHLVTVYERAD 1791
                     69********************9999999875 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.3   5.3e-07   0.00038       2      36 ..    1760    1794 ..    1759    1800 .. 0.93
   2 ?   -3.1   0.3       3.4   2.4e+03       2      16 ..    1902    1916 ..    1901    1928 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 5.3e-07
                   SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like    2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36  
                   +v++iG G+AGl aA +++++g+ V+++e+a+++g
   KKY23704.1 1760 KVAIIGSGPAGLAAADQLNRAGHLVTVYERADRAG 1794
                   79****************************99987 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.4
                   SEEEE--SHHHHHHH CS
  HI0933_like    2 dviviGgGaAGlmaA 16  
                   +viviGgG  G  + 
   KKY23704.1 1902 NVIVIGGGDTGNDCI 1916
                   79******9996665 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.2   1.4e-06   0.00098       2      44 ..    1761    1803 ..    1760    1831 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.4e-06
  FAD_oxidored    2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglva 44  
                    v ++G+gpaG+aAA +  raG  v + e+ ++ GGll  g+ +
    KKY23704.1 1761 VAIIGSGPAGLAAADQLNRAGHLVTVYERADRAGGLLMYGIPN 1803
                    89**********************************9988755 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       6.5   4.6e+03      67      94 ..      58      83 ..      47      88 .. 0.82
   2 !    8.7   0.1    0.0032       2.3       6      39 ..    1757    1790 ..    1755    1858 .. 0.73
   3 ?    6.4   0.0     0.017        12       2      35 ..    1895    1928 ..    1894    1960 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 6.5
  NAD_binding_7 67 aatddrelneriaeaakarrilvnvadk 94
                   aa  + + +++i+ +a+  ++l+n++ +
     KKY23704.1 58 AAHIKGKASHKIVSDAR--NLLCNMTHR 83
                   5556678899******9..*****9865 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0032
  NAD_binding_7    6 kgkkvlvvGgGevAarkvrklleagakvtvvape 39  
                     +gkkv ++G G+ ++  + +l +ag  vtv+  +
     KKY23704.1 1757 TGKKVAIIGSGPAGLAAADQLNRAGHLVTVYERA 1790
                     69****************************9877 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.017
  NAD_binding_7    2 fldlkgkkvlvvGgGevAarkvrklleagakvtv 35  
                     ++  k+k+v+v+GgG+ +   + + ++ gak +v
     KKY23704.1 1895 YISAKDKNVIVIGGGDTGNDCIGTSVRHGAKSVV 1928
                     56789*************9999999999998766 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1   0.00067      0.48      28      60 ..    1758    1790 ..    1737    1799 .. 0.85
   2 ?    3.4   0.0     0.057        41      29      53 ..    1901    1925 ..    1894    1935 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00067
                   --EEEEESTSHHHHHHHHHHHHTT-EEEEEESS CS
  AlaDh_PNT_C   28 pakvlviGgGvaGlqAiatakglgakVtvlDvr 60  
                     kv +iG G aGl+A+   ++ g  Vtv++  
   KKY23704.1 1758 GKKVAIIGSGPAGLAAADQLNRAGHLVTVYERA 1790
                   569**************************9865 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.057
                   -EEEEESTSHHHHHHHHHHHHTT-E CS
  AlaDh_PNT_C   29 akvlviGgGvaGlqAiatakglgak 53  
                    +v+viGgG  G   i t+++ gak
   KKY23704.1 1901 KNVIVIGGGDTGNDCIGTSVRHGAK 1925
                   689*******************997 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00013     0.093      19      72 ..    1760    1814 ..    1754    1828 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
                  EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTT..STTBSEEEEETT CS
        Thi4   19 DvvivGaGssGLtaayylakkpdlkvailersvspGGGawlG..Gqlfsaivvrkp 72  
                   v+i+G+G++GL+aa  l ++ +  v++ er    GG    G   +  ++ vv++ 
  KKY23704.1 1760 KVAIIGSGPAGLAAADQLNRA-GHLVTVYERADRAGGLLMYGipNMKLDKRVVQRR 1814
                  699******************.88899***99998887665533466666666665 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.12        88     185     205 ..    1535    1555 ..    1521    1565 .. 0.84
   2 ?    7.7   0.1    0.0022       1.6       2      30 ..    1761    1787 ..    1760    1793 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.12
  Lycopene_cycl  185 gltFlYalPldsdrllvEeTe 205 
                      ++F+ +lP+d +r++ EeT+
     KKY23704.1 1535 LPRFVKVLPTDYKRVMEEETK 1555
                     58******************7 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0022
  Lycopene_cycl    2 vvviGaGpAglslAarlteakpglkvvli 30  
                     v++iG+GpAgl+ A +l  +++g  v++ 
     KKY23704.1 1761 VAIIGSGPAGLAAADQL--NRAGHLVTVY 1787
                     89***************..7777666655 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.4      0.18   1.3e+02       8      37 ..    1074    1104 ..    1068    1116 .. 0.83
   2 ?    8.7   0.0    0.0021       1.5       4      38 ..    1752    1786 ..    1749    1806 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.18
  Rossmann-like    8 sarlsvGiisaGrvG.talgaaleraghvvv 37  
                     +ar+sv ++s   vG +a g+a +ra+h+++
     KKY23704.1 1074 RARVSVKLVSEVGVGiVASGVAKARADHILI 1104
                     689*******9999944689********875 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0021
  Rossmann-like    4 pdersarlsvGiisaGrvGtalgaaleraghvvvg 38  
                     p+++++  +v ii++G  G a +  l+ragh v+ 
     KKY23704.1 1752 PPQERTGKKVAIIGSGPAGLAAADQLNRAGHLVTV 1786
                     666666779**********************9975 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         1   7.5e+02     186     247 ..    1082    1143 ..    1057    1150 .. 0.73
   2 ?    6.1   0.0    0.0045       3.2       2      41 ..    1759    1798 ..    1758    1807 .. 0.94
   3 ?    1.6   0.0     0.099        71     140     209 ..    1847    1927 ..    1830    1931 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1
    FMO-like  186 vlviGlGnsggdiavelsrtaeqvllstrsGswvlsr...vsdsGypwdmllvtrfksllknilp 247 
                  v  +G+G  ++ +a      a+++l+s + G+   sr   +   G pw++ l+   ++l+ n l 
  KKY23704.1 1082 VSEVGVGIVASGVAK---ARADHILISGHDGGTGASRwtgIKYAGLPWELGLAETHQTLVLNDLR 1143
                  455666666666654...47999******99999998444567899****999888888777663 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0045
    FMO-like    2 kkvaviGaGvsGlasikccleegleptcfersddiGGlwr 41  
                  kkva+iG+G +Gla+       g   t +er+d  GGl  
  KKY23704.1 1759 KKVAIIGSGPAGLAAADQLNRAGHLVTVYERADRAGGLLM 1798
                  9*****************999****************975 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.099
    FMO-like  140 davmvctGhhvnp..hlplesfpGiekfkGqyfhsrdyk......epevf...kgkrvlviGlGnsggd.iavelsrtaeqv 209 
                  dav++ tG  v    ++p     Gi+ f  q++h +           +++   k+k v+viG G++g d i + + + a+ v
  KKY23704.1 1847 DAVIIATGATVARdlKIPGRESEGIH-FAMQFLHKNTKSlldselADDAYisaKDKNVIVIGGGDTGNDcIGTSVRHGAKSV 1927
                  78888888777651245666777774.7777777543321111111222223389*************95667777777776 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00045      0.33       1      28 [.    1760    1787 ..    1760    1813 .. 0.86
   2 ?   -0.6   0.1      0.76   5.4e+02       1      25 [.    1902    1926 ..    1902    1932 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00045
                  CEEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA    1 dviViGgGhAGceAAlaaarlGakvlLi 28  
                  +v +iG G AG++AA ++ r+G+ v+ +
  KKY23704.1 1760 KVAIIGSGPAGLAAADQLNRAGHLVTVY 1787
                  699********************99988 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.76
                  CEEEE-SSHHHHHHHHHHHHTT--E CS
        GIDA    1 dviViGgGhAGceAAlaaarlGakv 25  
                  +viViGgG  G  +  ++ r Gak 
  KKY23704.1 1902 NVIVIGGGDTGNDCIGTSVRHGAKS 1926
                  59*********99998888888875 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.4   0.00058      0.41     236     303 ..    1097    1177 ..    1089    1184 .. 0.62
   2 ?   -3.0   0.0       3.8   2.7e+03     321     341 ..    1222    1242 ..    1214    1245 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00058
                  TTESEEEE--GGGTSSTT---HHHCH.............HHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHH CS
      FMN_dh  236 aGvdgivvSNHGGRqldgapatidvL.............peiveavggrievlvDgGirrGsDvlkAlalGAdavllGRpf 303 
                  a +d i++S H G    +  + i+                 + + ++gr+ v  Dg  r+G Dv+ A  lGA+  +++   
  KKY23704.1 1097 ARADHILISGHDGGTGASRWTGIKYAglpwelglaethqTLVLNDLRGRTIVQTDGQLRTGRDVAIACLLGAEEWGFATTP 1177
                  5566666666666333333333333222222222222212235667889***********************977666555 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.8
                  HHHHHHHHHHHHHT-SBHHHH CS
      FMN_dh  321 ilraelertmallGvksvael 341 
                   + +el++ ma lG ++++e+
  KKY23704.1 1222 YIANELRAIMAKLGLRTINEM 1242
                  6789*************9986 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00071      0.51      30      71 ..    1752    1793 ..    1740    1815 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00071
                    SBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHH CS
  2-Hacid_dh_C   30 lgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkk 71  
                    + +e +gk+v+iiG G  G a+a+ l+  g  v++y+r  ++
    KKY23704.1 1752 PPQERTGKKVAIIGSGPAGLAAADQLNRAGHLVTVYERADRA 1793
                    567889******************************998764 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.14        99      11      45 ..    1757    1790 ..    1752    1806 .. 0.87
   2 ?   -3.0   0.0       9.5   6.8e+03      69      86 ..    1839    1856 ..    1837    1858 .. 0.81
   3 ?    5.1   0.0      0.03        22       2      40 ..    1890    1928 ..    1889    1931 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.14
                    TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESS CS
  Shikimate_DH   11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRt 45  
                    ++kkv +iG G  +  +a +L ++g   v+v  R 
    KKY23704.1 1757 TGKKVAIIGSGPAGLAAADQLNRAGHL-VTVYERA 1790
                    579******************999987.9999886 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 9.5
                    HHHHHHT-SEEEE-SSSS CS
  Shikimate_DH   69 lkellaeadvvisatase 86  
                    l++l +e+d vi+at+++
    KKY23704.1 1839 LHSLRKENDAVIIATGAT 1856
                    5566689********986 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.03
                    HHHHHHS..TT-EEEEES-SHHHHHHHHHHHCCT-CEEE CS
  Shikimate_DH    2 lakkkleslkekkvlliGaGemaelvakhLlakgvkkvv 40  
                    la +   s k+k+v++iG G +++  +   +++g+k+vv
    KKY23704.1 1890 LADDAYISAKDKNVIVIGGGDTGNDCIGTSVRHGAKSVV 1928
                    6777777899***************99999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 1.30u 0.38s 00:00:01.68 Elapsed: 00:00:00.54
# Mc/sec: 11819.17
//
Query:       KKY23705.1  [L=742]
Description: putative fungal specific transcription [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-07   29.0   0.1    8.8e-07   28.2   0.1    1.3  1  Fungal_trans  Fungal specific transcription factor domain
    1.1e-06   28.7  12.4    1.1e-06   28.7  12.4    2.2  2  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
      0.044   12.3   0.0      0.063   11.8   0.0    1.1  1  Cep3          Centromere DNA-binding protein complex CBF3 sub


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.1   1.5e-10   8.8e-07      57     174 ..     292     396 ..     273     403 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.5e-10
  Fungal_trans  57 esnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrr 153
                   e++ +lts  q +   + ++++l +++f s ++ l+++q+Ll ++ ++    +   ++ ++g++vr+a slgL+ + ++ +        + e  +rr
    KKY23705.1 292 EKERELTS--QVY--VCCAYQALRMTNFMSYPT-LESVQTLLVICNVLAYNMNPGNAYVVLGMTVRIAFSLGLQTDDPRFS--------AQELYARR 375
                   33333333..344..466666666678888888.*********************************************76........666899** PP

  Fungal_trans 154 RlwwaaFylDktialklGrpp 174
                   R+wwa  + D ++++ + rp+
    KKY23705.1 376 RVWWALAWQDSHYSVSYDRPT 396
                   ******999999999999986 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7  12.4   1.8e-10   1.1e-06       1      39 [.      27      65 ..      27      66 .. 0.94
   2 ?   -1.4   0.7      0.44   2.6e+03      17      34 ..     241     259 ..     234     262 .. 0.69

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 1.8e-10
                SS-HHHHHCT---STSSSS-HHHHHCT..HHHCCCCTCCCE CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkkln..leCtfysesskr 39
                +aC +C+++KvKCd+k P C +C+k+     Ct y+++ kr
  KKY23705.1 27 KACYPCHSRKVKCDRKLP-CDSCIKRDhaDLCT-YERPLKR 65
                59****************.********9899**.9999988 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.44
                 SSS-HHHHHCT..HHHCCCC CS
     Zn_clus  17 kPaCsnCkkln..leCtfys 34 
                 k  C+ C ++   + Ct+y+
  KKY23705.1 241 KT-CRDCWSYYrdVACTIYP 259
                 44.99998887778999775 PP

>> Cep3  Centromere DNA-binding protein complex CBF3 subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.1e-05     0.063     106     170 ..     291     353 ..     266     391 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.1e-05
                 GGTHHHHHHHHHHHHHHHHHHHTTTTTS--HHHHHHHHHHTTTTHHHHSHHHHHHHHHHHHHHHH CS
        Cep3 106 teelqlelyegflkttitqlkkanfmanpdirliQiyliLsnTsflfeensladslllqclhvaK 170
                  e+ +    + ++ ++ + l ++nfm++p ++ +Q+ l+++n      +    +  ++  + v  
  KKY23705.1 291 LEKERELTSQVYVCCAYQALRMTNFMSYPTLESVQTLLVICNVLAYNMN--PGNAYVVLGMTVRI 353
                 4444555566777889999**********************97544433..44555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.55
# Mc/sec: 4084.07
//
Query:       KKY23706.1  [L=352]
Description: putative conidial pigment biosynthesis protein ayg1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 2151.23
//
Query:       KKY23707.1  [L=365]
Description: hypothetical protein UCRPC4_g02805 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2544.57
//
Query:       KKY23708.1  [L=228]
Description: putative rta1 domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-54  184.0   0.0    3.2e-54  183.7   0.0    1.0  1  RTA1      RTA1 like protein
     0.0011   18.3   2.3      0.017   14.4   0.3    2.3  2  SLAC1     Voltage-dependent anion channel
  ------ inclusion threshold ------
        1.8    9.0   8.0       0.36   11.2   0.5    2.9  3  HRG       Haem-transporter, endosomal/lysosomal, haem-respons


Domain annotation for each model (and alignments):
>> RTA1  RTA1 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.7   0.0   5.4e-58   3.2e-54      43     205 ..      15     220 ..       6     222 .. 0.97

  Alignments for each domain:
  == domain 1  score: 183.7 bits;  conditional E-value: 5.4e-58
        RTA1  43 fiaaaiYmllgrlilllgeelsllrpklytkiFvvlDvvslllqaaGGglaasasssae..aklGeniiiaGlalQvvvlvvFlllaldFllrvr.... 135
                 f+aa iY++l+++ +++g+++s+l+p+lyt++F+ +D+ s+++qa GGg+aa+  + +   a++G++iiiaG+alQ+vv+++ ++l+ +F++r++    
  KKY23708.1  15 FLAACIYLTLKHVTRHCGSQYSRLKPRLYTWLFIGGDFGSIVVQALGGGVAAAGGHAHPkvADIGDKIIIAGIALQLVVMTFAAALISEFYWRLKtkrp 113
                 89**************************************************997766669************************************** PP

        RTA1 136 .....................................kskkfkkfllalyaavlliliRsiyRvvElaeGwdgylithEvyfyvLdallillavvllnv 197
                                                      ++k+f++f++ + +a+l+i+iR+iyR+ E+++Gw+g+l+++E  fy+Ld+++++la+++++v
  KKY23708.1 114 irskqvepspgptteseeekgtaspnatvpqgtndfvSDKSFRIFCWGIGFAFLTIYIRCIYRIPEMSGGWGGPLMRKENDFYILDGMMCALATIAYTV 212
                 *************************************889*********************************************************** PP

        RTA1 198 fhpgrlfk 205
                 +hpg +f+
  KKY23708.1 213 VHPGIFFP 220
                 *****997 PP

>> SLAC1  Voltage-dependent anion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.3   2.9e-06     0.017     137     201 ..      44     115 ..       1     122 [. 0.68
   2 !    4.0   0.1    0.0042        25     173     263 ..     157     175 ..     137     219 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.9e-06
       SLAC1 137 awllpv..vgllvvallgallaes.qnpslqll....gilvvslllwglGlllalvlfvlylyrlithklpp 201
                 +wl+    +g +vv +lg+ +a+   + + +++    +i++++++l+++ +++a++l++ +++rl t+ +  
  KKY23708.1  44 TWLFIGgdFGSIVVQALGGGVAAAgGHAHPKVAdigdKIIIAGIALQLVVMTFAAALISEFYWRLKTKRPIR 115
                 5555434478899999999998887444444447799***************************99885544 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0042
       SLAC1 173 lllwglGlllalvlfvlylyrlithklppaelrptlfiplGplgqgalallllgkaapkaaevlkvlalllalflwglglfwllvavlsvl 263
                 +++wg+G+++  +++  +                                                                        +
  KKY23708.1 157 IFCWGIGFAFLTIYIRCI------------------------------------------------------------------------Y 175
                 566666666555444333........................................................................3 PP

>> HRG  Haem-transporter, endosomal/lysosomal, haem-responsive gene
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.5   6.1e-05      0.36       6      25 ..       5      24 ..       2      32 .. 0.90
   2 ?   -3.0   0.8       1.8   1.1e+04      15      19 ..      90      94 ..      82     106 .. 0.46
   3 ?    1.6   0.0     0.063   3.8e+02      17      34 ..     164     181 ..     154     199 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.1e-05
         HRG  6 aygifgsilglsaflvylvl 25
                ++gifg ++g+ a+++yl+l
  KKY23708.1  5 LIGIFGEAVGFLAACIYLTL 24
                78****************98 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.8
         HRG 15 glsaf 19
                 l+++
  KKY23708.1 90 QLVVM 94
                22222 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.063
         HRG  17 saflvylvlaivnkqgvs 34 
                 +afl+ ++  i++++++s
  KKY23708.1 164 FAFLTIYIRCIYRIPEMS 181
                 688888888899999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1522.39
//
Query:       KKY23709.1  [L=646]
Description: putative rna polymerase iii transcription factor subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-35  123.5   0.7    1.1e-35  123.5   0.7    1.9  2  Tau95     RNA polymerase III transcription factor (TF)IIIC su
    8.9e-34  116.4   1.1    2.5e-33  114.9   0.1    2.3  4  Tau95_N   Tau95 Triple barrel domain
  ------ inclusion threshold ------
        0.4   11.0   5.3       0.16   12.3   0.9    2.6  3  DUF3446   Early growth response N-terminal domain


Domain annotation for each model (and alignments):
>> Tau95  RNA polymerase III transcription factor (TF)IIIC subunit HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5   0.7   1.9e-39   1.1e-35       1     138 [.     198     348 ..     198     350 .. 0.93
   2 ?   -2.8   0.2       1.8   1.1e+04      22      57 ..     365     390 ..     354     424 .. 0.53

  Alignments for each domain:
  == domain 1  score: 123.5 bits;  conditional E-value: 1.9e-39
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXX-----EE-......--S--TT-----...HHHHHHHHHHHHHHHH-SEEEHHHHH CS
       Tau95   1 llpPplFsridlpfnykykqnplskvvk......kklvntsksrkkktivlk......PtepeeelvkelkekkelqkaveelkklfeerPiwtrraLk 87 
                 llpP++ s++++p ny y+qnp++k +        ++ n s s+k  t  ++      P +pe+ +++ +++  +    v  l+++f+ rPiwtrraL 
  KKY23709.1 198 LLPPQILSPHQVPTNYSYRQNPAVKRTLdpetnlPQTANLSLSTKIFTPQIQfdtetiPLGPEPTAPPLSTQPANFIGLVTLLRHIFDSRPIWTRRALL 296
                 58**********************9988999777666777777888888888******************99999************************ PP

                 TTS-.GGGTTTHHHHGGGTEEEE-SSTTTTEEEETT--TTS-GGGGGG-EEE CS
       Tau95  88 nkle.kkerkklklalpyvaYyfksGPWrdlwvrfGyDPrkdpeariYQtld 138
                 n+++ ++ +  +++a++yvaY ++sGPWrd+++r+G+DPr++p++r+YQtl 
  KKY23709.1 297 NQIPsSAPQFLVRYAVAYVAYAMRSGPWRDTYIRYGVDPRSSPDYRVYQTLL 348
                 ****88888*****************************************96 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.8
                 XXXXXXXXXXXXXXXXX-----EE---S--TT---- CS
       Tau95  22 plskvvkkklvntsksrkkktivlkPtepeeelvke 57 
                 p+sk++            + ++  kPt+ ++ ++++
  KKY23709.1 365 PNSKTQ----------PSQVASPSKPTQYSRTFKPS 390
                 233222..........22222222233333333333 PP

>> Tau95_N  Tau95 Triple barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   0.1   4.3e-37   2.5e-33       1     126 [.      26     158 ..      26     159 .. 0.95
   2 ?   -2.2   0.1      0.73   4.4e+03      62      92 ..     347     373 ..     343     392 .. 0.51
   3 ?   -3.6   0.0       1.9   1.2e+04     100     112 ..     480     492 ..     453     494 .. 0.74
   4 ?   -3.8   0.0       2.3   1.3e+04      93     120 ..     574     601 ..     555     603 .. 0.74

  Alignments for each domain:
  == domain 1  score: 114.9 bits;  conditional E-value: 4.3e-37
                 EEEEESS--SSHHHHHHTTT-HHHHHHHHHHHHH-G--EE-S-TT-TT---EE-EEE----EEEEE.......ETTTT..................... CS
     Tau95_N   1 vaveyPgivknvdkaietlgglekiskalkasekkkslelrlrpedpfshpilgeraptnnlllkvtvpkrtgkkrkrgsse.......sekekdssak 92 
                 ++ve+Pg +kn++k ietlgg++ i++al++++ +k+++l+++ped  s+ +++++ ptnnll+k+tvp rtg+krkrg+++        ++ ++++ +
  KKY23709.1  26 ISVEHPGLIKNIEKGIETLGGQSGIREALDPERISKPISLTFHPEDQASQRLTSNNRPTNNLLMKITVPIRTGRKRKRGTNDsfkedqsFQHVRKDACH 124
                 68******************************9999************************************************999885555667778 PP

                 ............EEEEEEEEEEEEE-TTSGGG-- CS
     Tau95_N  93 elrslednkkkykievvGviektvrFremaDFqy 126
                  lrsl+dn ++  +e++G+i++t+ Fr+m DF y
  KKY23709.1 125 MLRSLKDNPQTSDVEILGTIDQTHVFRTMPDFSY 158
                 8999****************************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.73
                 EEEEE.......ETTTT.............. CS
     Tau95_N  62 lllkvtvpkrtgkkrkrgssesekekdssak 92 
                 lll+  vp+   +krk +s++  ++k+++++
  KKY23709.1 347 LLLQL-VPR---EKRKYQSRNLPNSKTQPSQ 373
                 67777.453...3555544442333322222 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 1.9
                 .....EEEEEEEE CS
     Tau95_N 100 nkkkykievvGvi 112
                   ++y ++vvG++
  KKY23709.1 480 LPEEYDADVVGTA 492
                 6789999999987 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 2.3
                 ............EEEEEEEEEEEEE-TT CS
     Tau95_N  93 elrslednkkkykievvGviektvrFre 120
                  ++ + d+++ky++  v +++   +F++
  KKY23709.1 574 HEEGEADQNGKYSARTVQTASPARSFDG 601
                 4556677889999998888887777765 PP

>> DUF3446  Early growth response N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.2   1.3e+04      67      81 ..     145     159 ..     134     161 .. 0.82
   2 ?   12.3   0.9   2.7e-05      0.16      36      80 ..     363     406 ..     330     412 .. 0.72
   3 ?   -1.1   0.2       0.4   2.4e+03      35      50 ..     496     507 ..     486     534 .. 0.50

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.2
     DUF3446  67 elehiYsaaPtYssc 81 
                 + +h++   P +s +
  KKY23709.1 145 DQTHVFRTMPDFSYA 159
                 778999999999865 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 2.7e-05
     DUF3446  36 spsssssssssssssssspslscsvaaqqsselehiYsaaPtYss 80 
                 + + s +++s+ +s s+  + s +  + ++  ++hi+ + P+Y++
  KKY23709.1 363 NLPNSKTQPSQVASPSKPTQYSRTF-KPSTDKTSHIFNPKPPYPT 406
                 4455678888887777777779998.888889***********87 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.4
     DUF3446  35 sspsssssssssssss 50 
                  + +s+s +    +ss
  KKY23709.1 496 RAGTSASPA----PSS 507
                 222222222....222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 4143.84
//
Query:       KKY23710.1  [L=649]
Description: putative serine threonine protein phosphatase 2a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.8e-192  639.9   6.3   2.2e-192  639.6   6.3    1.1  1  B56       Protein phosphatase 2A regulatory B subunit (B56 fa
     0.0022   17.9   2.7          1    9.3   0.0    2.4  2  Sec7_N    Guanine nucleotide exchange factor in Golgi transpo
  ------ inclusion threshold ------
      0.081   13.0   0.2       0.17   11.9   0.2    1.5  1  rhaM      L-rhamnose mutarotase


Domain annotation for each model (and alignments):
>> B56  Protein phosphatase 2A regulatory B subunit (B56 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  639.6   6.3  3.7e-196  2.2e-192       1     415 []     191     600 ..     191     600 .. 0.99

  Alignments for each domain:
  == domain 1  score: 639.6 bits;  conditional E-value: 3.7e-196
         B56   1 lpslkdvppeereelflkklkqCsvvfdFndpssdlkekeiKretLkelveyvsnnrkkslkilteevyeeivkmisaNlfRplppsksnlldeaadpe 99 
                 lp +++vpp++r++lf++k++qC+++fdFnd+ +d k+keiKr +L+el++yv nnr+    ++te++y+ +v+m+++NlfRp+pp + n+  ea+dpe
  KKY23710.1 191 LPGFHEVPPNKRQDLFMQKIDQCNIIFDFNDAAADIKSKEIKRLALHELLDYVANNRS----VITEPMYPRVVDMFAKNLFRPVPP-PVNPQGEAFDPE 284
                 689****************************************************999....***********************7.666645669*** PP

         B56 100 edepvlepawpHlqlvYeillrfvespefdakvakkyidqsFvlkllelfdseDprERdylktilhriygkfldlrsfirkainniflrfiyeterhng 198
                 edepvle+awpH+q+vYe++lrf+es++f++++ak +id++Fvl+llelfdseDprERd+lkt+lhriygkfl+lrs+ir++inn+f++fiyeter+ng
  KKY23710.1 285 EDEPVLEVAWPHIQVVYEFFLRFIESQDFNTNIAKAHIDHQFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRSINNVFFQFIYETERFNG 383
                 *************************************************************************************************** PP

         B56 199 iaelLeilgsiingfalplkeehkkflervllpLhkvkslslyhqqLaycvvqfiekdpklaeevikgllkyWPitnsqKevlFLneleeileviepee 297
                 iaelLeilgsiingfalplkeehk fl+rvl+pLhkvksls+yh+qLayc+vqf+ekd+ l+eev+ gll+yWP+tns+Kev+FLne+e+i+ev++p+e
  KKY23710.1 384 IAELLEILGSIINGFALPLKEEHKLFLTRVLIPLHKVKSLSMYHPQLAYCIVQFLEKDAALTEEVVLGLLRYWPKTNSTKEVMFLNEVEDIFEVMDPAE 482
                 *************************************************************************************************** PP

         B56 298 fqkilkplfkrlakcissphfqVaeralylwnnekivnlisenseeilpilfpaleknskkHWnktvrglalnvlkllmeldpelfdecaakykeekek 396
                 f k+++plf++lak++ sphfqVaeraly+wnne+++nl+s+n e+ilpi+f  l++nsk HWn+t++g+++n++kl+me++p lfd+c+++y+e +++
  KKY23710.1 483 FAKVQEPLFNQLAKSVASPHFQVAERALYFWNNEYFCNLVSDNVETILPIMFAPLYENSKGHWNRTIHGMVYNAMKLFMEINPTLFDDCSHEYTELQNS 581
                 *************************************************************************************************** PP

         B56 397 ekekkkkreekWkkieeaA 415
                 ++ ++++r++kW+k++++A
  KKY23710.1 582 AESREQTRQAKWEKLAAQA 600
                 ****************987 PP

>> Sec7_N  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.9   0.00043       2.6      53     128 ..     355     431 ..     299     449 .. 0.72
   2 !    9.3   0.0   0.00017         1      48     127 ..     472     549 ..     464     568 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00043
      Sec7_N  53 khpellqllkqklcplLlknlsespsfpvferslrivllLlkkfrseLktEievflsllilillesdssl..wqrvla 128
                 k  +l + ++  + ++ ++++ e++ f+ +  +l+i+  +++ f   Lk+E + fl+ ++ +l  + +sl   +  la
  KKY23710.1 355 KFLNLRSYIRRSINNVFFQFIYETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLIPL-HKVKSLsmYHPQLA 431
                 66677788999999999999999**************************************99.66444412444444 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00017
      Sec7_N  48 gdvfrk.hpellqllkqklcplLlknlsespsfpvferslrivllLlkkfrseLktEievflsllilillesdsslwqrvl 127
                 +d+f+   p   + +++ l++ L k++ +sp+f+v er+l  ++   ++f + + + +e++l  ++ +l e+++  w+r +
  KKY23710.1 472 EDIFEVmDPAEFAKVQEPLFNQLAKSV-ASPHFQVAERAL--YFWNNEYFCNLVSDNVETILPIMFAPLYENSKGHWNRTI 549
                 5666641333366799***********.*********876..45557999*******************999999999976 PP

>> rhaM  L-rhamnose mutarotase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   2.9e-05      0.17      34      93 ..     552     610 ..     545     620 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.9e-05
        rhaM  34 agirnysIyldeegntLfailevgddeeadaaaaaadpkvqeWwalmaklqeaapsaspa 93 
                 +  + +++++ e + tLf  +  + +e + +a  +++ ++++W++l a+ q++  s++p+
  KKY23710.1 552 MVYNAMKLFM-EINPTLFDDCSHEYTELQNSAESREQTRQAKWEKLAAQAQQNRTSKPPV 610
                 5567899**7.89*****9888855555777777779***************88776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1065  (0.059401); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.52
# Mc/sec: 3765.80
//
Query:       KKY23711.1  [L=3818]
Description: putative histone acetylase complex subunit paf400 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-75  252.6   7.9    1.2e-74  251.6   7.9    1.6  1  FAT             FAT domain
    1.2e-28  100.6   1.9    1.4e-28  100.4   0.3    2.0  2  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
    1.1e-05   25.1   0.0    3.2e-05   23.6   0.0    1.9  1  FATC            FATC domain
  ------ inclusion threshold ------
       0.18   11.9   0.5       0.78    9.8   0.1    2.4  2  DUF627          Protein of unknown function (DUF627)
       0.25   11.9   0.6      1e+02    3.5   0.0    4.3  4  HEAT_EZ         HEAT-like repeat
       0.81   10.5   2.5        5.2    7.9   0.6    3.5  2  TPR_6           Tetratricopeptide repeat
        1.1    9.1   5.8        1.7    8.5   0.1    3.6  4  HrcA            HrcA protein C terminal domain
        1.7    8.9   9.4        1.4    9.2   0.1    3.3  3  TPR_2           Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> FAT  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.6   7.9   5.4e-78   1.2e-74       2     346 .]    2766    3115 ..    2765    3115 .. 0.97

  Alignments for each domain:
  == domain 1  score: 251.6 bits;  conditional E-value: 5.4e-78
                  CCTTCCCCTSSS.GHH..CCCCT.........TSSSS--CCCHCCC...CHH..--CCHCHHCCCHCCCCCCCCCTS---SCCCCCHHHHHCCCCCH CS
         FAT    2 plaaeaaWrlgq.Wds..meeylsvlk.....kdspdkaffeaila...lhr..nqfdeakeliekarqlldtelsalvgesynraygvlvrvQmla 85  
                  +l +eaaWr+ + W+    +e+l+++       ++p+++ff+a+++   +h+  +  +e+  ++++a+ql ++++++l++++ + ++++l+++Q+l+
  KKY23711.1 2766 DLLLEAAWRNLEaWNGeaNREQLDSMIksvsdAPTPRRTFFQAFMSllkFHTkqDSPQEFTHICDEAIQLSIRKWHQLPKRINYAHIPILQNFQQLV 2862
                  789*******988*999999999888889999**************7774545577***************************************** PP

                  HHCHHCCHHCSS-.........---TTTTTTT----TTS-TTTGCCCTTTCCCCTCCCHCCCHC..................HCCS-STTCCC..CC CS
         FAT   86 Eleeiiqykqkls.........sseklksllktWrkRlpgcqdnvevwqdiltvRslvlspied..................llkgvkaemwl..kf 153 
                  El++++ + ++l          +s++lk ll  Wr+Rlp+++d++++wqd++t+R++v++ i+                   +++g+++++w+  +f
  KKY23711.1 2863 ELHDASVICNSLAqtnernldsKSQELKVLLGAWRDRLPNVWDDINAWQDLVTWRQHVFQLINGtylgllpqatqnaannsyAYRGYHETAWIinRF 2959
                  **********9999*************************************************9********************************* PP

                  CCCHCHHHHCCSTTHHCCCCCHCTT.....TT.TSSCCCHHHHHHHCCHHHHHSSCCHHHHCCTSSCCCSS-SS---............HH.HHCCC CS
         FAT  154 anlarksgrlslAekaLkelleedpeewlprappevvyaylKylwssgeqkealqkLreftsellekkeelqsgleaqkeptnleeftkll.arcyl 249 
                  a++ark+++ ++++ +L+++                      y+++++e++ea++kLre++++++++k+el++gl+++ ++tnl++f   + a++y+
  KKY23711.1 2960 AHVARKHHMSDVCITQLSKI----------------------YTLPNIEIQEAFLKLREQAKCHYQNKSELSNGLDVI-NNTNLNYFGPPQkAEFYT 3033
                  ********************......................************************************.****************** PP

                  TCCCCCCCCCCCT.S...-SSCCHHHHCCHHCTCCCHSTTCCCCHHHHHCCHHHHHHSSSS.S-TCCHHHHCCT..CCHHHHTTTS.STTTCHHHHH CS
         FAT  250 kkGewqealqkldwseekieeilqsysaateidpswykawhtwalfnfevvskeeeqkeeeepedlqeyvvpavkgflksislsse.nslqdtlRLL 345 
                  +kG+++++l++       ++e+++++  a ++d ++ kaw++w+l+ ++ +++         p+d++ ++ +av+++l+++ l+++ +s++ + R+L
  KKY23711.1 3034 LKGMFLAKLNQ-------KDEANEAFGVALYYDLRLPKAWAEWGLYSDRLFKED--------PNDIE-LASNAVSCYLEAAGLYKNaKSRKLLSRIL 3114
                  ***********.......9***********************************........****8.***************************** PP

                  C CS
         FAT  346 t 346 
                  +
  KKY23711.1 3115 W 3115
                  8 PP

>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       2.6   5.8e+03     179     208 ..     116     151 ..     115     156 .. 0.68
   2 !  100.4   0.3   6.4e-32   1.4e-28       2     249 ..    3481    3742 ..    3480    3743 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.6
                     CCTCSHCSSSS.....-.SSS.SS.S-THHHHHHTST CS
  PI3_PI4_kinase 179 ilpdewkllpf.....pqekv.Pf.rltrelvlaidp 208
                     ++   ++ll+        ++v Pf +l +e+++ +d+
      KKY23711.1 116 CMKTIMDLLRHqasktT-DQVqPFlDLIQEMFQMMDQ 151
                     55556666665555533.4456***********9975 PP

  == domain 2  score: 100.4 bits;  conditional E-value: 6.4e-32
                      EEEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHC......TTSTCHHHHH. CS
  PI3_PI4_kinase    2 sagiykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekk......gvpptasves. 87  
                      +a++ ++ +++r++e+i+q+f++++  lsk ++ +rr+l ++ + ++p +++ +++++  s+ t++ +++ ++         +      + + 
      KKY23711.1 3481 FAVQHPAARHCRREERILQLFRIFNGTLSKRKESRRRNLYFHLPLMVPIAPHIRLVQDDTSYITLQGVYEDHCRRTgmskdeP------ILFt 3567
                      56788899*****************************************************************7764433221......2224 PP

                      ......HHHHCHCHCCHHHHHCC....HHHHHHTSSTTHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSE CS
  PI3_PI4_kinase   88 ......lrvaldkkklkkekklk....fekrtalkpksgllqeFvkkspsaeewlearkqFvrslaklsvldyilgngDRhldNilvdktsgk 170 
                            l+ + ++ + +++++l        +   +   ++l++F + ++s+e+++ +r+qF+ ++a   +++yi+   +R ++++ +++ +g 
      KKY23711.1 3568 mekmrsLAEMKQNRTSEQTQVLRtemlTAIQDRWVSNTVVLDYFQSAYTSFEDFWLFRRQFAHQYAAVTFMTYIMHMSNRFPNKLSISRSTGD 3660
                      4555443333333333444444488888888999999******************************************************** PP

                      EEESSTTTCCTCSHCSSSS-.SSSSSS-THHHHHHTSTTCCHHHHHHHHHHHHHHHHHTHHH....HHHHHHHHHHHHCCSSC CS
  PI3_PI4_kinase  171 lihIDfGlilpdewkllpfpqekvPfrltrelvlaidpskdeglfresceealealrrdqnl....ltrllkkavkdglilwe 249 
                      + + +   +   ++  +++p e vPfrl ++++ +++p++ eg+f   ++ + ++l ++++     l + l+++v+d+++ w 
      KKY23711.1 3661 IWASELIPSINPQKAYFYNP-EHVPFRLSPNIQVLMGPLALEGIFACAVMAIARSLTEPDTSspieLEQQLSLFVRDEMTHWA 3742
                      **********8888888889.*************************************999622226777888********97 PP

>> FATC  FATC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.4e-08   3.2e-05       2      32 .]    3788    3818 .]    3787    3818 .] 0.95

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.4e-08
        FATC    2 LsveqQVdrLIkeATdpeNLaqmyiGWcPww 32  
                  L+ +q+  +LI+ A++p NLa m+  W+P++
  KKY23711.1 3788 LPANQTLIDLISKAVNPVNLAGMDALWMPYL 3818
                  8999999**********************96 PP

>> DUF627  Protein of unknown function (DUF627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00035      0.78      18      80 ..     243     306 ..     227     312 .. 0.85
   2 ?   -3.9   0.1       6.1   1.4e+04      24      77 ..    3576    3629 ..    3568    3636 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00035
      DUF627  18 iedli.srhgedeksallhrlqGtifvklakktedpdvkfayllasvecfseavelsrfyArsL 80 
                 i+ ++  + + +ek+    ++qGtif  +++ ++++++   ++ a v+ +s    l r+yA+ L
  KKY23711.1 243 IKAILmLQAKPQEKAHAEAVQQGTIFTGVSRDIKNRAAFGEFITAQVKTMSFLAYLLRVYANQL 306
                 555554566666777778899****************************************998 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 6.1
      DUF627   24 rhgedeksallhrlqGtifvklakktedpdvkfayllasvecfseavelsrfyA 77  
                  + +++++s++ ++l+ +++ ++ ++  +++v   y++ +  +f+    + r  A
  KKY23711.1 3576 EMKQNRTSEQTQVLRTEMLTAIQDRWVSNTVVLDYFQSAYTSFEDFWLFRRQFA 3629
                  445557889999999999999999999999999999999999888777765444 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.047     1e+02      14      43 ..     298     327 ..     291     333 .. 0.85
   2 ?   -3.2   0.0         6   1.3e+04      12      31 ..     718     734 ..     712     735 .. 0.80
   3 ?   -3.6   0.1       7.9   1.8e+04      21      44 ..     812     835 ..     809     838 .. 0.83
   4 ?    2.9   0.0     0.071   1.6e+02       6      38 ..    2249    2278 ..    2248    2283 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.047
     HEAT_EZ  14 laggepellqplvpeilpaLlalLnddsde 43 
                 l+ + +++lq+++p +   L++lL+d+++e
  KKY23711.1 298 LLRVYANQLQDFLPTLPGVLVRLLKDCPKE 327
                 55677899******************9874 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6
     HEAT_EZ  12 Grlaggepellqplvpeilp 31 
                 +   +++ + l+p+v++i+ 
  KKY23711.1 718 S---AQNEQVLHPHVTKIVT 734
                 4...7999*********985 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 7.9
     HEAT_EZ  21 llqplvpeilpaLlalLnddsdeV 44 
                 +l p+++ ++++L+ +L+  sd+V
  KKY23711.1 812 HLLPHLSHLMRPLVVALRAGSDLV 835
                 67899999******9998877777 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.071
     HEAT_EZ    6 aAawaLGrlaggepellqplvpeilpaLlalLn 38  
                  +++w+L+    + p  + +++++i++aL + L 
  KKY23711.1 2249 NVLWTLA---KVKPAEMDQHISAIMKALQQKLA 2278
                  5789998...999***************98873 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.6    0.0023       5.2       6      25 ..    2699    2718 ..    2698    2720 .. 0.91
   2 ?   -1.4   0.1       2.2     5e+03       7      25 ..    3036    3054 ..    3034    3057 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0023
                  HHHHHHHHHHHHHHHHHHHH CS
       TPR_6    6 lalsyrklgdtdkAlealer 25  
                   alsy+++g +dkA +++e 
  KKY23711.1 2699 SALSYEQQGMWDKAQQLYEA 2718
                  59****************96 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.2
                  HHHHHHHHHHHHHHHHHHH CS
       TPR_6    7 alsyrklgdtdkAlealer 25  
                  ++ + kl+++d+A ea+  
  KKY23711.1 3036 GMFLAKLNQKDEANEAFGV 3054
                  56677899********975 PP

>> HrcA  HrcA protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1   0.00075       1.7      87     164 ..      76     152 ..      40     164 .. 0.75
   2 ?   -3.1   0.1       2.7   5.9e+03      66     104 ..     399     435 ..     385     482 .. 0.63
   3 ?    0.8   0.2      0.17   3.8e+02      65     161 ..    2186    2278 ..    2142    2303 .. 0.70
   4 ?   -2.5   0.0       1.7   3.9e+03     102     157 ..    3747    3801 ..    3730    3808 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00075
        HrcA  87 lseiaerlreeklkeelseye.elleqllealeealerseelyvsGtsnllrqpefsddeklrellelleekvvllkll 164
                 + ei +rl  + l++ +++   e++++l++ ++   e++  l ++ +  llr++  +  ++++++l+l++e  ++++ +
  KKY23711.1  76 ILEILHRLPFN-LNDIENY-AvEIVDTLMQLVRVENEDNAVLCMKTIMDLLRHQASKTTDQVQPFLDLIQEMFQMMDQV 152
                 44455555555.4544444.348888888866444335555*************98878***********999988443 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.7
        HrcA  66 vseeelaklsnllneklagltlseiaerlreeklkeels 104
                 +  ++++  ++ l++++ g++++ ++++l  + + e  +
  KKY23711.1 399 I-RRTVEVYTKNLHDNFPGTSFQTMSAKLLLN-MAESIA 435
                 3.344888899999999999999999987766.444333 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.17
        HrcA   65 evseeelaklsnllneklagltlseiaerlreeklkeelseyeelleqllealeealerseelyvsGtsnllrqpefsdd...eklrellelleekv 158 
                  e se++ ++l++++   l  l+ ++ +e+ + e    ++++ +e+++ l ++++e+l+     yv+G++ l   ++++ +   + +++++++l++k 
  KKY23711.1 2186 EDSEDSTSRLRSIVRMVLDALPEEQPEEEEAME---VDSNTPSEFVTFLTTVATETLS--ASNYVAGINVLWTLAKVKPAemdQHISAIMKALQQK- 2276
                  556666777788888788877777766643333...3334445888888888888885..457999999998887776334468999999999887. PP

        HrcA  159 vll 161 
                   l+
  KKY23711.1 2277 -LA 2278
                  .43 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.7
        HrcA  102 elseyeelleqllealeealerseelyvsGtsnllrqpefsddeklrellelleek 157 
                  + ++ ++l++ + + l+ea + +++++v+ + +l+r p+  +    ++l++l+ + 
  KKY23711.1 3747 RGQSGQNLMQDVTQ-LREAVQANSDFIVKRAVSLARVPDTGNLPANQTLIDLISKA 3801
                  33333477777777.5666778899*************998888888888888765 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2       6.8   1.5e+04       1      21 [.     424     444 ..     424     446 .. 0.89
   2 ?    9.2   0.1   0.00063       1.4       8      27 ..    2700    2719 ..    2697    2725 .. 0.90
   3 ?    4.4   0.7     0.022        50       1      29 [.    3029    3057 ..    3029    3060 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6.8
       TPR_2   1 aealynlGlayyklgdyeeAl 21 
                 a++l n++++ +kl + ++A+
  KKY23711.1 424 AKLLLNMAESIAKLENKADAR 444
                 6789999************98 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00063
       TPR_2    8 GlayyklgdyeeAleafekA 27  
                  +l+y+++g +++A +++e+A
  KKY23711.1 2700 ALSYEQQGMWDKAQQLYEAA 2719
                  899***************99 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.022
       TPR_2    1 aealynlGlayyklgdyeeAleafekAle 29  
                  ae +   G+ ++kl++ +eA eaf  Al 
  KKY23711.1 3029 AEFYTLKGMFLAKLNQKDEANEAFGVALY 3057
                  6889999*****************88875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3818 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       801  (0.0446762); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.61u 0.34s 00:00:01.95 Elapsed: 00:00:00.53
# Mc/sec: 21695.04
//
Query:       KKY23712.1  [L=305]
Description: putative mrna splicing protein yju2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-70  238.7  12.8    1.5e-70  238.4  12.8    1.0  1  DUF572    Family of unknown function (DUF572)
  ------ inclusion threshold ------
       0.21   10.4   4.0       0.26   10.0   4.0    1.1  1  YjbH      Exopolysaccharide biosynthesis protein YbjH
       0.64   10.1   3.7        1.7    8.7   0.8    2.4  2  zf-ACC    Acetyl-coA carboxylase zinc finger domain
        2.5    8.7  18.1    2.2e+02    2.4  18.1    2.2  1  Ead_Ea22  Ead/Ea22-like protein


Domain annotation for each model (and alignments):
>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.4  12.8   3.4e-74   1.5e-70       1     222 [.       9     252 ..       9     293 .. 0.73

  Alignments for each domain:
  == domain 1  score: 238.4 bits;  conditional E-value: 3.4e-74
      DUF572   1 kYyPPDfdpskipalrekar.lknrqlvvRlmaPfnmrCktCgeyIykGvkFNarKekVgnetYlgipIfrFyikCtrClneitfkTDPkntdYvveeG 98 
                 kYyPP+fdpski +  +++r +  + ++vRlmaPf+m+C+ CgeyIykG+kFNarKe  ++e+Yl+i I+rFyi+CtrC++eitfkTDPkn dY++e G
  KKY23712.1   9 KYYPPEFDPSKITRTPRHLRpTGPKLITVRLMAPFSMKCTACGEYIYKGRKFNARKE-TTDEKYLNIAIYRFYIRCTRCSGEITFKTDPKNMDYTCERG 106
                 9***********655455555778*********************************.5788************************************* PP

      DUF572  99 atRnfkaek.......leeeea....kreekekeeeeaedamkklEkrtkdskkemealesLeeLqelnqrqakv...dfdanlelrkefr.eekkere 182
                 a+Rnf++++       +++e+     +ree+e+ee ++ +am++lE + +dsk+em++  +L+e++  n+r ++    + ++ + +  + r +e k++ 
  KKY23712.1 107 AKRNFEPWRenqaeidETDEQRldrlEREEAEEEEVKERNAMEELESKMQDSKREMQVADALDEIRTRNARIERGergGAEQVALASLQDRvDEVKALA 205
                 *********99999984444445666777777778888****************************999876554110445544444455515555555 PP

      DUF572 183 eeeedeealkekislekikllpedeedekkaklle.gkte.......s 222
                 e+ edeea k ++  e+++++ ++ ede + +  +  +t+        
  KKY23712.1 206 EK-EDEEAAKRAFAAENVEKVIREAEDEYQRRNGNgVSTStkaevasA 252
                 55.5******99977766666555545333333331222112222220 PP

>> YjbH  Exopolysaccharide biosynthesis protein YbjH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.0   5.8e-05      0.26     265     380 ..     119     247 ..      73     278 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 5.8e-05
        YjbH 265 rkaaaae....................eadesalaeeLakeaglelekialdgdtltvelentryrdeaeaveraarvlanelpasvetlkvveteegl 343
                 +     e                    e++e +  eeL+++ + +++++++++   +++ +n+r+  e+ +++ a +v  ++l + v+++k   ++e  
  KKY23712.1 119 A-----EidetdeqrldrlereeaeeeEVKERNAMEELESKMQDSKREMQVADALDEIRTRNARI--ERGERGGAEQVALASLQDRVDEVKALAEKEDE 210
                 1.....12223344455554444444478888888888888666666666666666666666655..56778899************************ PP

        YjbH 344 plsetevrredleqleneksaaaelaaaselaeaaee 380
                 ++++  + +e++e++ +e++ +++ ++   ++++++ 
  KKY23712.1 211 EAAKRAFAAENVEKVIREAEDEYQRRNGNGVSTSTKA 247
                 **************99998888888776666555444 PP

>> zf-ACC  Acetyl-coA carboxylase zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.8   0.00039       1.7       3      13 ..      46      56 ..      45      57 .. 0.93
   2 ?    1.5   0.1     0.073   3.3e+02       2       9 ..      81      88 ..      80      95 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00039
      zf-ACC  3 KCpsCgemlyk 13
                KC++Cge +yk
  KKY23712.1 46 KCTACGEYIYK 56
                9*********8 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.073
      zf-ACC  2 tKCpsCge 9 
                ++C++C+ 
  KKY23712.1 81 IRCTRCSG 88
                79****64 PP

>> Ead_Ea22  Ead/Ea22-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4  18.1      0.05   2.2e+02      45     130 ..      89     228 ..      45     236 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.05
    Ead_Ea22  45 e..........fklgrtvakeh......daefiaaanpatvlaLLDelekkqqrikeleeeaenedialtvgklrveleaaekrl.............. 113
                 e          ++ +++ ak++      +++ i+  +++  l  L+  e++++++ke++++   e++++++++ + e+++a+                 
  KKY23712.1  89 EitfktdpknmDYTCERGAKRNfepwreNQAEIDE-TDEQRLDRLEREEAEEEEVKERNAM---EELESKMQDSKREMQVADALDeirtrnarierger 183
                 1333333455778889999999999999999****.5**999999999999999**99987...999****9999999998885588888899999999 PP

    Ead_Ea22 114 ............................ekenveqadaaeveita 130
                                             +++ +  a++ e++i++
  KKY23712.1 184 ggaeqvalaslqdrvdevkalaekedeeAAKRAFAAENVEKVIRE 228
                 999999999999999999999988755555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2161  (0.120531); expected 358.6 (0.02)
Passed bias filter:                      757  (0.0422221); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2103.37
//
Query:       KKY23713.1  [L=1275]
Description: putative 20s cyclosome subunit (cut9 cdc16) [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-28   96.2   4.4     0.0044   17.0   0.1   10.7 10  TPR_2       Tetratricopeptide repeat
    2.1e-28   96.9   0.3    0.00057   19.6   0.2   10.2 10  TPR_1       Tetratricopeptide repeat
    1.3e-25   89.4  13.1    1.3e-22   79.8   0.5    5.5  6  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
    2.7e-17   61.4   2.7      0.032   14.4   0.0    7.9  7  TPR_8       Tetratricopeptide repeat
    3.7e-17   62.6   6.3    0.00038   20.9   0.0    8.0  8  TPR_19      Tetratricopeptide repeat
    8.2e-15   54.9  27.7    4.7e-07   30.0   0.7   10.1  7  TPR_12      Tetratricopeptide repeat
    8.2e-11   41.4   4.9    0.00013   21.7   0.3    6.8  6  TPR_10      Tetratricopeptide repeat
    8.6e-11   42.3  13.2       0.17   12.6   0.0    8.1 10  TPR_16      Tetratricopeptide repeat
    3.5e-10   39.8  11.5        1.2   10.1   0.2    8.6  7  TPR_14      Tetratricopeptide repeat
    2.9e-08   33.3   3.3       0.66    9.7   0.1    7.5  7  TPR_11      TPR repeat
    1.9e-07   30.6  21.4       0.18   11.9   0.1    9.6  9  TPR_7       Tetratricopeptide repeat
    5.5e-05   23.4   6.7       0.11   13.2   0.2    6.8  5  TPR_4       Tetratricopeptide repeat
     0.0003   21.0   2.6         79    4.0   0.0    7.2  8  TPR_17      Tetratricopeptide repeat
    0.00039   20.9  15.5        2.5    8.9   0.1    7.9  9  TPR_6       Tetratricopeptide repeat
    0.00064   19.2   3.1     0.0034   16.8   1.4    2.5  2  TPR_MalT    MalT-like TPR region
      0.003   17.0   0.0     0.0067   15.8   0.0    1.5  1  Pkinase     Protein kinase domain
  ------ inclusion threshold ------
      0.029   14.1   0.0         37    4.0   0.0    3.8  3  RPN7        26S proteasome subunit RPN7
       0.26    9.5   1.5       0.41    8.8   1.5    1.2  1  FTHFS       Formate--tetrahydrofolate ligase
        5.8    7.1  10.0         45    4.3   0.1    5.5  7  TPR_9       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0      0.05        47       5      23 ..     157     175 ..     154     177 .. 0.91
   2 !    8.3   0.1    0.0028       2.6       4      22 ..     189     207 ..     186     211 .. 0.86
   3 !   17.0   0.1   4.6e-06    0.0044       4      31 ..     274     301 ..     271     303 .. 0.94
   4 ?    0.2   0.0       1.1   1.1e+03       2      22 ..     385     405 ..     384     406 .. 0.87
   5 !    9.2   0.0    0.0015       1.4       2      33 ..     468     499 ..     467     500 .. 0.89
   6 !    7.9   0.3     0.004       3.7       1      31 [.     501     531 ..     501     534 .. 0.89
   7 ?    0.9   0.0      0.69   6.5e+02       7      29 ..     541     563 ..     538     567 .. 0.88
   8 !   14.3   0.0   3.5e-05     0.033       2      31 ..     587     616 ..     586     618 .. 0.92
   9 !   16.3   0.0   7.8e-06    0.0074       6      31 ..     632     657 ..     629     659 .. 0.94
  10 ?    4.7   0.0     0.041        39       6      30 ..     703     727 ..     699     731 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.05
       TPR_2   5 ynlGlayyklgdyeeAlea 23 
                 ++l+++++ + +y +Al++
  KKY23713.1 157 FWLAQVHFSSENYTRALAL 175
                 89**************987 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0028
       TPR_2   4 lynlGlayyklgdyeeAle 22 
                  y  G +y+k+++ye+Al 
  KKY23713.1 189 RYLAGHCYIKQNKYEQALS 207
                 5889*************85 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 4.6e-06
       TPR_2   4 lynlGlayyklgdyeeAleafekAleld 31 
                 +y +Gl+y+k++ +++A+++++ A+++d
  KKY23713.1 274 CYLRGLCYAKRNAFDRARDCYKDAVRID 301
                 89***********************987 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 1.1
       TPR_2   2 ealynlGlayyklgdyeeAle 22 
                 ++l  +++ ++ + ++ eAl+
  KKY23713.1 385 DLLLSRAETLFTQCRFPEALA 405
                 567889*************85 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.0015
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 + + ++G  y+  g+ +eA+++f k+   dP+
  KKY23713.1 468 YTYLAIGVYYLSIGKIAEARRFFSKSSLMDPH 499
                 57899********************9888886 PP

  == domain 6  score: 7.9 bits;  conditional E-value: 0.004
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleld 31 
                 a a+   +   ++ g++++A++a+  A +l 
  KKY23713.1 501 AAAWIGFAHTFAAEGEHDQAIAAYSTAARLF 531
                 578888899999***************9996 PP

  == domain 7  score: 0.9 bits;  conditional E-value: 0.69
       TPR_2   7 lGlayyklgdyeeAleafekAle 29 
                 lG+ +++l++   A+e++ +A +
  KKY23713.1 541 LGMQHLALNNMSLAHEYLSAAHA 563
                 8999*************999976 PP

  == domain 8  score: 14.3 bits;  conditional E-value: 3.5e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleld 31 
                  +l++lG ++y++ ++  A+++f+++l l+
  KKY23713.1 587 LVLNELGVILYHQSNLPAAIKLFQQSLVLA 616
                 689***********************9875 PP

  == domain 9  score: 16.3 bits;  conditional E-value: 7.8e-06
       TPR_2   6 nlGlayyklgdyeeAleafekAleld 31 
                 nl+ a+++lg+y+e l  f+++l+++
  KKY23713.1 632 NLAHALRRLGRYDESLTEFDECLRIA 657
                 89*********************986 PP

  == domain 10  score: 4.7 bits;  conditional E-value: 0.041
       TPR_2   6 nlGlayyklgdyeeAleafekAlel 30 
                   Gl+++ lg++ eA+  + +A++l
  KKY23713.1 703 SKGLVLLSLGRPREAVVTLHEAVRL 727
                 5799******************998 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.92   8.6e+02       7      22 ..     159     174 ..     157     176 .. 0.83
   2 !   10.7   0.1    0.0004      0.37       5      21 ..     190     206 ..     186     209 .. 0.87
   3 !   19.6   0.2   6.1e-07   0.00057       4      31 ..     274     301 ..     271     304 .. 0.93
   4 ?    0.1   0.0      0.87   8.2e+02       2      21 ..     385     404 ..     384     405 .. 0.88
   5 !    7.1   0.0    0.0055       5.2       2      32 ..     468     498 ..     467     500 .. 0.88
   6 !    9.5   0.1   0.00091      0.86       2      30 ..     502     530 ..     501     533 .. 0.84
   7 ?   -2.0   0.1       4.1   3.8e+03       7      27 ..     541     561 ..     540     564 .. 0.86
   8 !   13.7   0.0   4.4e-05     0.042       3      30 ..     588     615 ..     586     616 .. 0.92
   9 !   12.8   0.0   8.6e-05     0.081       5      31 ..     631     657 ..     627     659 .. 0.91
  10 !    7.2   0.0    0.0051       4.8       4      30 ..     701     727 ..     699     729 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.92
                 HHHHHHHTT-HHHHHH CS
       TPR_1   7 lGnayfklgkydeAle 22 
                 l++++f+ ++y  Al+
  KKY23713.1 159 LAQVHFSSENYTRALA 174
                 8999999999999986 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0004
                 HHHHHHHHHTT-HHHHH CS
       TPR_1   5 ynlGnayfklgkydeAl 21 
                 y  G++y k++ky++Al
  KKY23713.1 190 YLAGHCYIKQNKYEQAL 206
                 5569************8 PP

  == domain 3  score: 19.6 bits;  conditional E-value: 6.1e-07
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALeln 31 
                 +y +G++y k + +d A ++y+ A++++
  KKY23713.1 274 CYLRGLCYAKRNAFDRARDCYKDAVRID 301
                 799**********************998 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.87
                 HHHHHHHHHHHHTT-HHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAl 21 
                 + l  ++ ++f + ++ eAl
  KKY23713.1 385 DLLLSRAETLFTQCRFPEAL 404
                 678899*************9 PP

  == domain 5  score: 7.1 bits;  conditional E-value: 0.0055
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnP 32 
                 +++  +G+ y++ gk  eA  +++k    +P
  KKY23713.1 468 YTYLAIGVYYLSIGKIAEARRFFSKSSLMDP 498
                 68999*******************9877777 PP

  == domain 6  score: 9.5 bits;  conditional E-value: 0.00091
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALel 30 
                  a+ + ++++   g++d+A+++y+ A +l
  KKY23713.1 502 AAWIGFAHTFAAEGEHDQAIAAYSTAARL 530
                 56666689999*************99776 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 4.1
                 HHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekA 27 
                 lG+ ++ l++   A ey + A
  KKY23713.1 541 LGMQHLALNNMSLAHEYLSAA 561
                 7999999***99999998877 PP

  == domain 8  score: 13.7 bits;  conditional E-value: 4.4e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALel 30 
                 +l+ lG++++++ ++  A++ +++ L l
  KKY23713.1 588 VLNELGVILYHQSNLPAAIKLFQQSLVL 615
                 799*********************9966 PP

  == domain 9  score: 12.8 bits;  conditional E-value: 8.6e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALeln 31 
                  nl++a+++lg+yde l  ++++L++ 
  KKY23713.1 631 ANLAHALRRLGRYDESLTEFDECLRIA 657
                 6**********************9985 PP

  == domain 10  score: 7.2 bits;  conditional E-value: 0.0051
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALel 30 
                 +  +G+++++lg++ eA+    +A++l
  KKY23713.1 701 HTSKGLVLLSLGRPREAVVTLHEAVRL 727
                 7889***************99999876 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.5   1.4e-25   1.3e-22       1      81 [.     132     211 ..     132     212 .. 0.98
   2 ?    3.8   0.2     0.072        68      26      51 ..     274     300 ..     262     308 .. 0.77
   3 ?   -0.9   0.1         2   1.9e+03      18      52 ..     379     414 ..     359     420 .. 0.65
   4 !    8.5   0.1    0.0025       2.3       8      80 ..     451     525 ..     445     527 .. 0.85
   5 ?    1.3   0.1      0.43     4e+02      30      81 ..     593     652 ..     585     653 .. 0.65
   6 ?   -3.1   0.0       9.9   9.3e+03      63      80 ..     705     722 ..     699     725 .. 0.67

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 1.4e-25
                 HTT-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3   1 dqnnyknAiflaerllaaetespedayllAlclylngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 d+ +y++Ai ++++++ a t++p+da++lA++++++++y+rA+ ll  ++l ++s++cryl+++c++k++kye+A+++L++
  KKY23713.1 132 DKSQYESAIYIGDKVY-ALTNDPSDAFWLAQVHFSSENYTRALALLLGTDLIDRSPACRYLAGHCYIKQNKYEQALSTLGE 211
                 688*************.**************************************************************97 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.072
                 HHHHHHHHHHTT-HHHHHHHHHCT.SH CS
      ANAPC3  26 ayllAlclylngqykrAyellrka.kl 51 
                  yl +lc+ +++ ++rA + +++a ++
  KKY23713.1 274 CYLRGLCYAKRNAFDRARDCYKDAvRI 300
                 4667**************999988555 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 2
                 HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHH CS
      ANAPC3  18 aetespedayllAlclylngqykrAyellrka.kln 52 
                   +++p+ ++  A++l+ + ++ +A+ ++ +  +++
  KKY23713.1 379 NLANNPDLLLSRAETLFTQCRFPEALAITTSIfNSQ 414
                 3344555555569************99999885554 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0025
                 HHHHHHHHH.HHH--HHHHHHH.HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3   8 Aiflaerllaaetespedayll.AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                  +fl++  la ++ ++  +yl  +  +++ g+  +A ++++k+   +++s ++++ fA++  + +++++Aiaa++
  KKY23713.1 451 TLFLLSHTLADNAPDEPYTYLAiGVYYLSIGKIAEARRFFSKSsLMDPHSAAAWIGFAHTFAAEGEHDQAIAAYS 525
                 578888888777777777888548999999*************88888888********************9986 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.43
                 HHHHHHTT-HHHHHHHHHCTSHHHC-H........HHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  30 AlclylngqykrAyellrkaklnsksl........gcrylfAqcllkLkkyeeAiaaLek 81 
                 +  ly++++   A++l++++    + l        + r  +A++l  L++y+e ++ +++
  KKY23713.1 593 GVILYHQSNLPAAIKLFQQSLVLATQLacspiawiATRANLAHALRRLGRYDESLTEFDE 652
                 556777777777777777763333333244445555566678999999999999988776 PP

  == domain 6  score: -3.1 bits;  conditional E-value: 9.9
                 HHHHHHTT-HHHHHHHH- CS
      ANAPC3  63 AqcllkLkkyeeAiaaLe 80 
                 + +ll L++  eA+ +L 
  KKY23713.1 705 GLVLLSLGRPREAVVTLH 722
                 456677777777776664 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       3.3   3.1e+03       5      22 ..     157     174 ..     157     177 .. 0.86
   2 !    7.9   0.2    0.0042         4       5      23 ..     190     208 ..     187     211 .. 0.88
   3 !   12.2   0.1   0.00017      0.16       1      31 [.     271     301 ..     271     304 .. 0.95
   4 !    8.8   0.0    0.0021         2       3      32 ..     469     498 ..     467     500 .. 0.93
   5 ?    6.7   0.1      0.01       9.7       2      30 ..     502     530 ..     501     532 .. 0.89
   6 !   14.4   0.0   3.4e-05     0.032       5      31 ..     631     657 ..     628     659 .. 0.93
   7 ?    2.3   0.0      0.27   2.6e+02       5      30 ..     702     727 ..     699     727 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 3.3
                 HHHHHHHHHTT-HHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAke 22 
                 ++l++++++ ++y  A +
  KKY23713.1 157 FWLAQVHFSSENYTRALA 174
                 679**********99976 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0042
                 HHHHHHHHHTT-HHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkey 23 
                 y+ g++y+k+++ye+A ++
  KKY23713.1 190 YLAGHCYIKQNKYEQALST 208
                 899*************876 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 0.00017
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleld 31 
                 a ++y+ g++y k + ++ A  +y+ a+++d
  KKY23713.1 271 ATMCYLRGLCYAKRNAFDRARDCYKDAVRID 301
                 578*************************998 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.0021
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldp 32 
                  y+ +g  yl+ g++ eA  ++ k   +dp
  KKY23713.1 469 TYLAIGVYYLSIGKIAEARRFFSKSSLMDP 498
                 699*********************999998 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.01
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekalel 30 
                  a+   +++    g++++A+++y  a +l
  KKY23713.1 502 AAWIGFAHTFAAEGEHDQAIAAYSTAARL 530
                 689999*****************988765 PP

  == domain 6  score: 14.4 bits;  conditional E-value: 3.4e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleld 31 
                  nl+++++ lg+y+e+   + ++l+++
  KKY23713.1 631 ANLAHALRRLGRYDESLTEFDECLRIA 657
                 69**********************997 PP

  == domain 7  score: 2.3 bits;  conditional E-value: 0.27
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekalel 30 
                   +g+++l+lg+  eA+ ++ +a++l
  KKY23713.1 702 TSKGLVLLSLGRPREAVVTLHEAVRL 727
                 679**************999888765 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00099      0.94       1      48 [.     130     176 ..     130     184 .. 0.92
   2 !   10.3   0.0   0.00081      0.77      24      48 ..     185     209 ..     180     214 .. 0.89
   3 ?    0.7   0.0      0.83   7.8e+02      31      58 ..     277     304 ..     269     314 .. 0.77
   4 !    8.9   0.0    0.0022       2.1      21      60 ..     380     418 ..     364     423 .. 0.79
   5 !   20.9   0.0     4e-07   0.00038       5      57 ..     481     533 ..     478     542 .. 0.93
   6 ?    0.4   0.0         1   9.8e+02      23      50 ..     584     611 ..     575     620 .. 0.74
   7 ?    4.4   0.2     0.058        55       4      47 ..     599     649 ..     596     656 .. 0.65
   8 ?   -0.1   0.0       1.4   1.4e+03      34      52 ..     707     725 ..     706     733 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00099
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealL 48 
                 +l+  +y++A+ +  ++++  ++ ++a   LA++++++ +++ A alL
  KKY23713.1 130 ALDKSQYESAIYIGDKVYALTNDPSDAFW-LAQVHFSSENYTRALALL 176
                 57888***************999999999.9***************99 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00081
      TPR_19  24 naearllLAeallalgqldeAealL 48 
                 +++ r+l   ++++++ +++A  +L
  KKY23713.1 185 SPACRYLAGHCYIKQNKYEQALSTL 209
                 57889999**************998 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.83
      TPR_19  31 LAeallalgqldeAealLdalpeedpdd 58 
                    ++ + + +d A+++ +++ + d ++
  KKY23713.1 277 RGLCYAKRNAFDRARDCYKDAVRIDVQC 304
                 5669*************99988877765 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.0022
      TPR_19  21 dpknaearllLAeallalgqldeAealLdalpeedpddar 60 
                  ++n++++l  Ae l+ + ++ eA a+   + +++ d ++
  KKY23713.1 380 LANNPDLLLSRAETLFTQCRFPEALAITTSIFNSQND-SA 418
                 568*************************999999999.44 PP

  == domain 5  score: 20.9 bits;  conditional E-value: 4e-07
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 g+ aeA +++++    dp++a+a+++ A    a g+ d+A+a+ +++ + ++ 
  KKY23713.1 481 GKIAEARRFFSKSSLMDPHSAAAWIGFAHTFAAEGEHDQAIAAYSTAARLFQG 533
                 789****************************************9999988876 PP

  == domain 6  score: 0.4 bits;  conditional E-value: 1
      TPR_19  23 knaearllLAeallalgqldeAealLda 50 
                 +++ ++  L  +l+ + +l +A++l ++
  KKY23713.1 584 GDPLVLNELGVILYHQSNLPAAIKLFQQ 611
                 6777777888888888888888887776 PP

  == domain 7  score: 4.4 bits;  conditional E-value: 0.058
      TPR_19   4 egdyaeAlalleqal...qe...dpk.naearllLAeallalgqldeAeal 47 
                 + ++ +A++l++q l   ++   +p    + r++LA al  lg++de    
  KKY23713.1 599 QSNLPAAIKLFQQSLvlaTQlacSPIaWIATRANLAHALRRLGRYDESLTE 649
                 66777888888885522211233443333456699***********97765 PP

  == domain 8  score: -0.1 bits;  conditional E-value: 1.4
      TPR_19  34 allalgqldeAealLdalp 52 
                 +ll+lg++ eA  +L ++ 
  KKY23713.1 707 VLLSLGRPREAVVTLHEAV 725
                 589999*****99998765 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.4      0.02        19      24      68 ..     167     209 ..     155     212 .. 0.71
   2 ?    6.3   0.1     0.013        12      50      74 ..     276     300 ..     269     303 .. 0.81
   3 ?    0.2   0.0      0.98   9.3e+02       8      24 ..     389     405 ..     366     424 .. 0.78
   4 ?    6.2   0.0     0.013        12      39      71 ..     461     493 ..     452     494 .. 0.84
   5 !    8.6   2.1    0.0025       2.3       3      37 ..     501     535 ..     499     566 .. 0.78
   6 !   30.0   0.7   4.9e-10   4.7e-07       5      75 ..     588     657 ..     586     658 .. 0.92
   7 ?    4.2   0.0     0.055        52       5      32 ..     700     727 ..     689     763 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.02
      TPR_12  24 ellekaleiarrllGpdh.pltattlrnLgrlyralgryeeAlell 68 
                 e++ +al++    lG+d  +   ++++  g +y ++++ye+Al+ l
  KKY23713.1 167 ENYTRALALL---LGTDLiDRSPACRYLAGHCYIKQNKYEQALSTL 209
                 6677777777...455554446678888999999999999999866 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.013
      TPR_12  50 nLgrlyralgryeeAlelleealai 74 
                   g +y +++ ++ A++ +++a++i
  KKY23713.1 276 LRGLCYAKRNAFDRARDCYKDAVRI 300
                 5688999999999999999999887 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.98
      TPR_12   8 nlaavlrrlgrydeAle 24 
                  +a++l+ + r+ eAl+
  KKY23713.1 389 SRAETLFTQCRFPEALA 405
                 46666666777666665 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.013
      TPR_12  39 pdhpltattlrnLgrlyralgryeeAlelleea 71 
                 ++ p++  t+ ++g +y+  g+ +eA++++ ++
  KKY23713.1 461 DNAPDEPYTYLAIGVYYLSIGKIAEARRFFSKS 493
                 667777789*******************99776 PP

  == domain 5  score: 8.6 bits;  conditional E-value: 0.0025
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrll 37 
                 a+a+   a++ ++ g++d+A++ + +a ++++ ++
  KKY23713.1 501 AAAWIGFAHTFAAEGEHDQAIAAYSTAARLFQGSH 535
                 67888999*******************99996543 PP

  == domain 6  score: 30.0 bits;  conditional E-value: 4.9e-10
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 +ln+l+++l+++ ++  A++l++++l +a++l  +   + ++t+ nL+ ++r+lgry+e l  + e+l+ia
  KKY23713.1 588 VLNELGVILYHQSNLPAAIKLFQQSLVLATQL-ACSPIAWIATRANLAHALRRLGRYDESLTEFDECLRIA 657
                 6888*************************888.46667789****************************97 PP

  == domain 7  score: 4.2 bits;  conditional E-value: 0.055
      TPR_12   5 alnnlaavlrrlgrydeAlellekalei 32 
                 +++  ++vl+ lgr  eA   l++a+++
  KKY23713.1 700 IHTSKGLVLLSLGRPREAVVTLHEAVRL 727
                 3334555666666666666666666554 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.91   8.6e+02       8      25 ..     159     176 ..     158     177 .. 0.92
   2 ?    1.5   0.0      0.32     3e+02      12      31 ..     281     300 ..     278     302 .. 0.92
   3 ?    0.5   0.0      0.65   6.1e+02       4      25 ..     469     490 ..     468     493 .. 0.87
   4 !   10.1   0.0   0.00062      0.59       5      31 ..     589     615 ..     587     619 .. 0.90
   5 !   21.7   0.3   1.4e-07   0.00013       1      31 [.     626     656 ..     626     657 .. 0.95
   6 ?    0.1   0.0      0.83   7.9e+02       9      30 ..     705     726 ..     704     728 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.91
      TPR_10   8 LanalrqrgrydeAeall 25 
                 La ++++  +y++A+all
  KKY23713.1 159 LAQVHFSSENYTRALALL 176
                 9**************996 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.32
      TPR_10  12 lrqrgrydeAealleealai 31 
                 + +r+ +d+A++ +++a++i
  KKY23713.1 281 YAKRNAFDRARDCYKDAVRI 300
                 88999************987 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.65
      TPR_10   4 slnNLanalrqrgrydeAeall 25 
                 ++  +++++ + g+ +eA++++
  KKY23713.1 469 TYLAIGVYYLSIGKIAEARRFF 490
                 67789**************976 PP

  == domain 4  score: 10.1 bits;  conditional E-value: 0.00062
      TPR_10   5 lnNLanalrqrgrydeAealleealai 31 
                 ln L+++l+++ ++ +A +l++++l +
  KKY23713.1 589 LNELGVILYHQSNLPAAIKLFQQSLVL 615
                 9**********************9965 PP

  == domain 5  score: 21.7 bits;  conditional E-value: 1.4e-07
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealai 31 
                 + +++ NLa+alr++gryde++  ++e+l+i
  KKY23713.1 626 WIATRANLAHALRRLGRYDESLTEFDECLRI 656
                 7899*************************98 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.83
      TPR_10   9 analrqrgrydeAealleeala 30 
                 + +l ++gr  eA+  l+ea++
  KKY23713.1 705 GLVLLSLGRPREAVVTLHEAVR 726
                 678999********99999986 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.14   1.3e+02      38      57 ..     157     176 ..     145     186 .. 0.85
   2 ?    6.4   0.1     0.015        14       3      55 ..     159     208 ..     158     211 .. 0.86
   3 ?    5.1   0.0      0.04        37      38      63 ..     275     300 ..     260     303 .. 0.88
   4 ?   -1.1   0.0       3.4   3.2e+03      31      55 ..     381     405 ..     365     409 .. 0.78
   5 ?    0.5   0.0       1.1     1e+03      24      58 ..     460     491 ..     457     500 .. 0.84
   6 !   11.3   0.8   0.00046      0.43       2      65 ..     472     532 ..     471     535 .. 0.89
   7 !    7.6   0.7    0.0065       6.1       3      59 ..     507     560 ..     505     566 .. 0.82
   8 !   12.6   0.0   0.00018      0.17      30      61 ..     585     613 ..     575     620 .. 0.80
   9 ?    5.8   0.0     0.023        21       2      24 ..     632     654 ..     631     661 .. 0.82
  10 ?    0.1   0.0       1.4   1.3e+03       3      26 ..     704     727 ..     699     733 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.14
      TPR_16  38 lllgdaalrqgrlaeAaaly 57 
                 ++l+++++   ++++A+al+
  KKY23713.1 157 FWLAQVHFSSENYTRALALL 176
                 78999999999999999876 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.015
      TPR_16   3 laraalragdyddAaaal..eaalkrdpssPdaaeAllllgdaalrqgrlaeAa.a 55 
                 la+ ++ + +y++A+a+l  + +++r    P+    ++l g ++ +q+ ++ A+  
  KKY23713.1 159 LAQVHFSSENYTRALALLlgTDLIDRS---PA---CRYLAGHCYIKQNKYEQALsT 208
                 688999999*******99988888888...88...999999999999999999855 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.04
      TPR_16  38 lllgdaalrqgrlaeAaalyraalra 63 
                 +l+g+++++++ +++A++ y+ a+r 
  KKY23713.1 275 YLRGLCYAKRNAFDRARDCYKDAVRI 300
                 899*************9999998875 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 3.4
      TPR_16  31 PdaaeAllllgdaalrqgrlaeAaa 55 
                   +++ ll +++ ++ q r++eA+a
  KKY23713.1 381 ANNPDLLLSRAETLFTQCRFPEALA 405
                 446779999*******999999986 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 1.1
      TPR_16  24 lkrdpssPdaaeAllllgdaalrqgrlaeAaalyr 58 
                  +++   Pd +  +l+ g+ +l  g  aeA+ ++ 
  KKY23713.1 460 ADNA---PDEPYTYLAIGVYYLSIGKIAEARRFFS 491
                 4455...99999999***************98875 PP

  == domain 6  score: 11.3 bits;  conditional E-value: 0.00046
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 a + ++l  g+ ++A++ +     +d   P  a+A+ + +  +++ g+++ A+a+y  a+r   
  KKY23713.1 472 AIGVYYLSIGKIAEARRFFSKSSLMD---PHSAAAWIGFAHTFAAEGEHDQAIAAYSTAARLFQ 532
                 67788999999999999999999999...****************************9998765 PP

  == domain 7  score: 7.6 bits;  conditional E-value: 0.0065
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyra 59 
                  a+ +++ g+ d+A+aa+ +a +++      +  +l+lg  +l+++++ +A +++ a
  KKY23713.1 507 FAHTFAAEGEHDQAIAAYSTAARLF---QGSHLPQLFLGMQHLALNNMSLAHEYLSA 560
                 58999999*****************...88888888888888888888777766666 PP

  == domain 8  score: 12.6 bits;  conditional E-value: 0.00018
      TPR_16  30 sPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 +P+    l++lg+++++q++l++A+ l++  l
  KKY23713.1 585 DPL---VLNELGVILYHQSNLPAAIKLFQQSL 613
                 344...899****************9999876 PP

  == domain 9  score: 5.8 bits;  conditional E-value: 0.023
      TPR_16   2 alaraalragdyddAaaaleaal 24 
                 +la+a++r+g+yd+ +  +++ l
  KKY23713.1 632 NLAHALRRLGRYDESLTEFDECL 654
                 68999999999999999887655 PP

  == domain 10  score: 0.1 bits;  conditional E-value: 1.4
      TPR_16   3 laraalragdyddAaaaleaalkr 26 
                 +++ +l +g++++A+  l++a+++
  KKY23713.1 704 KGLVLLSLGRPREAVVTLHEAVRL 727
                 466677777777777666666665 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.76   7.2e+02       6      24 ..     158     176 ..     154     178 .. 0.92
   2 ?    5.6   0.0     0.036        34       6      36 ..     276     306 ..     270     313 .. 0.73
   3 ?    6.7   0.0     0.017        16       4      40 ..     470     506 ..     467     510 .. 0.91
   4 !    9.2   0.9    0.0025       2.4       2      37 ..     502     537 ..     501     543 .. 0.82
   5 ?    2.1   0.0       0.5   4.7e+02       6      31 ..     591     616 ..     586     628 .. 0.85
   6 !   10.1   0.2    0.0013       1.2       4      30 ..     630     656 ..     626     659 .. 0.89
   7 ?    4.8   0.0     0.065        61       9      34 ..     706     731 ..     703     734 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.76
      TPR_14   6 alaeallalGdpdeAiall 24 
                  la++++ ++++ +A+all
  KKY23713.1 158 WLAQVHFSSENYTRALALL 176
                 59**************998 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.036
      TPR_14   6 alaeallalGdpdeAiallrralalaPddae 36 
                 +++  ++ +  +d+A++++++a++ + +  e
  KKY23713.1 276 LRGLCYAKRNAFDRARDCYKDAVRIDVQCFE 306
                 34455788899************98876555 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.017
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawll 40 
                 +la++ ++l  G+ +eA++ + +    +P +a+aw+ 
  KKY23713.1 470 YLAIGVYYLSIGKIAEARRFFSKSSLMDPHSAAAWIG 506
                 7899999*****************999********85 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.0025
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaea 37 
                 +a+   a+ ++a G++d+Aia++  a +l+ ++   
  KKY23713.1 502 AAWIGFAHTFAAEGEHDQAIAAYSTAARLFQGSHLP 537
                 68888899******************9988766555 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.5
      TPR_14   6 alaeallalGdpdeAiallrralala 31 
                 +l+ +l+++ ++ +Ai+l+++ l la
  KKY23713.1 591 ELGVILYHQSNLPAAIKLFQQSLVLA 616
                 6888999**************98765 PP

  == domain 6  score: 10.1 bits;  conditional E-value: 0.0013
      TPR_14   4 llalaeallalGdpdeAiallrralal 30 
                 ++ la+al++lG++de+++ ++++l+ 
  KKY23713.1 630 RANLAHALRRLGRYDESLTEFDECLRI 656
                 6679*******************9986 PP

  == domain 7  score: 4.8 bits;  conditional E-value: 0.065
      TPR_14   9 eallalGdpdeAiallrralalaPdd 34 
                  +ll lG+p+eA+  l++a++l  +d
  KKY23713.1 706 LVLLSLGRPREAVVTLHEAVRLLGGD 731
                 6899***************9987666 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.044        42       1      15 [.     193     207 ..     193     211 .. 0.85
   2 !    6.0   0.0    0.0099       9.3       3      24 ..     280     301 ..     278     308 .. 0.87
   3 ?   -1.5   0.1       2.2   2.1e+03      25      39 ..     464     478 ..     463     481 .. 0.82
   4 !    9.7   0.1    0.0007      0.66       3      23 ..     510     530 ..     508     531 .. 0.89
   5 ?    1.2   0.0      0.32     3e+02       3      22 ..     595     614 ..     593     618 .. 0.87
   6 ?    4.1   0.0      0.04        38       2      21 ..     635     654 ..     634     657 .. 0.84
   7 ?   -1.9   0.0       2.9   2.7e+03       1      23 [.     705     727 ..     705     727 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.044
      TPR_11   1 GdayyeqGkyeeAie 15 
                 G+ y +q+kye+A+ 
  KKY23713.1 193 GHCYIKQNKYEQALS 207
                 7779*********85 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0099
      TPR_11   3 ayyeqGkyeeAieaYkkAlkld 24 
                  y +++ ++ A  +Yk A+++d
  KKY23713.1 280 CYAKRNAFDRARDCYKDAVRID 301
                 5999*****************9 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.2
      TPR_11  25 PdnaeayynLGlayy 39 
                 Pd +  y+++G+ y+
  KKY23713.1 464 PDEPYTYLAIGVYYL 478
                 899********6665 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.0007
      TPR_11   3 ayyeqGkyeeAieaYkkAlkl 23 
                  + + G+ ++Ai+aY++A +l
  KKY23713.1 510 TFAAEGEHDQAIAAYSTAARL 530
                 68899*************876 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.32
      TPR_11   3 ayyeqGkyeeAieaYkkAlk 22 
                 ++y q ++++Ai+ +++ l 
  KKY23713.1 595 ILYHQSNLPAAIKLFQQSLV 614
                 8999************9876 PP

  == domain 6  score: 4.1 bits;  conditional E-value: 0.04
      TPR_11   2 dayyeqGkyeeAieaYkkAl 21 
                 +a++ +G+y+e+++++ + l
  KKY23713.1 635 HALRRLGRYDESLTEFDECL 654
                 7999**********988765 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 2.9
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkl 23 
                 G ++ ++G+  eA+  + +A++l
  KKY23713.1 705 GLVLLSLGRPREAVVTLHEAVRL 727
                 77899999999********9987 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.29   2.7e+02       5      22 ..     159     176 ..     159     178 .. 0.91
   2 ?    4.9   0.1     0.034        32       5      22 ..     192     209 ..     187     212 .. 0.83
   3 ?    2.9   0.2      0.14   1.4e+02       5      29 ..     277     299 ..     274     307 .. 0.80
   4 ?   -1.5   0.0       3.6   3.4e+03      17      32 ..     390     410 ..     388     414 .. 0.80
   5 ?    1.8   0.0      0.33   3.1e+02       1      24 [.     469     492 ..     469     501 .. 0.86
   6 ?    2.2   0.1      0.23   2.2e+02       6      22 ..     508     524 ..     507     532 .. 0.86
   7 !    8.6   0.0    0.0021         2       2      29 ..     589     616 ..     588     620 .. 0.91
   8 !   11.9   0.1   0.00019      0.18       3      29 ..     631     657 ..     629     663 .. 0.90
   9 ?    1.5   0.0      0.41   3.8e+02      12      29 ..    1076    1093 ..    1071    1102 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.29
       TPR_7   5 LarlysrlGdyeeAiely 22 
                 La+++++  +y +A+ l+
  KKY23713.1 159 LAQVHFSSENYTRALALL 176
                 89************9886 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.034
       TPR_7   5 LarlysrlGdyeeAiely 22 
                  +++y ++++ye+A++ +
  KKY23713.1 192 AGHCYIKQNKYEQALSTL 209
                 6899**********9876 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.14
       TPR_7   5 LarlysrlGdyeeAielyeqsLalt 29 
                  + +y +++ +++A ++y+   a++
  KKY23713.1 277 RGLCYAKRNAFDRARDCYKD--AVR 299
                 5789**************99..544 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 3.6
       TPR_7  17 eAielyeq.....sLaltkdp 32 
                 +A++l++q     +La+t + 
  KKY23713.1 390 RAETLFTQcrfpeALAITTSI 410
                 89999*998888888888765 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.33
       TPR_7   1 aLlnLarlysrlGdyeeAielyeq 24 
                 ++l++++ y + G+ +eA +++ +
  KKY23713.1 469 TYLAIGVYYLSIGKIAEARRFFSK 492
                 799***************999976 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.23
       TPR_7   6 arlysrlGdyeeAiely 22 
                 a+++ ++G++++Ai  y
  KKY23713.1 508 AHTFAAEGEHDQAIAAY 524
                 688999********998 PP

  == domain 7  score: 8.6 bits;  conditional E-value: 0.0021
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLalt 29 
                 L+ L+++   + +   Ai+l++qsL+l+
  KKY23713.1 589 LNELGVILYHQSNLPAAIKLFQQSLVLA 616
                 899*********************9987 PP

  == domain 8  score: 11.9 bits;  conditional E-value: 0.00019
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLalt 29 
                  nLa++ +rlG+y+e ++ + ++L+++
  KKY23713.1 631 ANLAHALRRLGRYDESLTEFDECLRIA 657
                 59****************999998876 PP

  == domain 9  score: 1.5 bits;  conditional E-value: 0.41
       TPR_7   12 lGdyeeAielyeqsLalt 29  
                   +d+ eAie +++sL+++
  KKY23713.1 1076 KRDRVEAIESHRESLRTA 1093
                  68999********99765 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.61   5.8e+02       1      24 [.     186     209 ..     186     211 .. 0.90
   2 ?   -0.9   0.0       4.1   3.8e+03       4      22 ..     387     405 ..     384     406 .. 0.85
   3 ?   -0.3   1.2       2.7   2.5e+03       8      22 ..     508     522 ..     501     524 .. 0.78
   4 !   13.2   0.2   0.00012      0.11       2      25 ..     628     651 ..     627     652 .. 0.88
   5 ?    3.6   0.0      0.14   1.3e+02       8      25 ..     705     722 ..     699     723 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.61
       TPR_4   1 arallaLArallalGdldeArall 24 
                 ++++++ +  +  +  +++A+ +l
  KKY23713.1 186 PACRYLAGHCYIKQNKYEQALSTL 209
                 6899*****************998 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 4.1
       TPR_4   4 llaLArallalGdldeAra 22 
                 ll +A++l+ + +++eA+a
  KKY23713.1 387 LLSRAETLFTQCRFPEALA 405
                 7889999999999999998 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 2.7
       TPR_4   8 ArallalGdldeAra 22 
                 A + +a G++d+A a
  KKY23713.1 508 AHTFAAEGEHDQAIA 522
                 777899******965 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 0.00012
       TPR_4   2 rallaLArallalGdldeAralle 25 
                 +++++LA al +lG++de ++ ++
  KKY23713.1 628 ATRANLAHALRRLGRYDESLTEFD 651
                 589***************988765 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.14
       TPR_4   8 ArallalGdldeAralle 25 
                 + +ll lG++ eA  +l+
  KKY23713.1 705 GLVLLSLGRPREAVVTLH 722
                 7899*********99986 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       3.3   3.1e+03      17      33 ..     190     206 ..     185     207 .. 0.83
   2 ?   -2.1   0.1       7.2   6.8e+03      17      33 ..     275     291 ..     275     292 .. 0.88
   3 ?   -1.4   0.0       4.5   4.3e+03      11      23 ..     382     394 ..     379     414 .. 0.90
   4 ?    4.0   0.0     0.083        79       7      33 ..     461     487 ..     458     488 .. 0.90
   5 ?    3.6   0.0      0.11     1e+02       4      33 ..     492     521 ..     489     522 .. 0.88
   6 ?    2.5   0.0      0.24   2.3e+02      12      33 ..     585     606 ..     583     607 .. 0.87
   7 ?    1.8   0.1      0.42     4e+02      17      31 ..     631     645 ..     628     647 .. 0.88
   8 ?   -2.4   0.0       8.8   8.3e+03      17      32 ..     702     717 ..     700     718 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 3.3
      TPR_17  17 nnLAelllknGdlmtAr 33 
                 ++ + ++ k++++++A+
  KKY23713.1 190 YLAGHCYIKQNKYEQAL 206
                 55688999*******96 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 7.2
      TPR_17  17 nnLAelllknGdlmtAr 33 
                 ++++ +++k++ +++Ar
  KKY23713.1 275 YLRGLCYAKRNAFDRAR 291
                 6899*******999998 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 4.5
      TPR_17  11 nnadaynnLAell 23 
                 nn+d++  +Ae+l
  KKY23713.1 382 NNPDLLLSRAETL 394
                 89********998 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.083
      TPR_17   7 eldPnnadaynnLAelllknGdlmtAr 33 
                 ++ P+ ++ y   ++++l++G+ ++Ar
  KKY23713.1 461 DNAPDEPYTYLAIGVYYLSIGKIAEAR 487
                 677999*******************98 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.11
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtAr 33 
                 k+   dP +a a+   A +++  G++++A+
  KKY23713.1 492 KSSLMDPHSAAAWIGFAHTFAAEGEHDQAI 521
                 555679**********************98 PP

  == domain 6  score: 2.5 bits;  conditional E-value: 0.24
      TPR_17  12 nadaynnLAelllknGdlmtAr 33 
                 ++ ++n+L+++l+++ +l  A+
  KKY23713.1 585 DPLVLNELGVILYHQSNLPAAI 606
                 7889*********999988876 PP

  == domain 7  score: 1.8 bits;  conditional E-value: 0.42
      TPR_17  17 nnLAelllknGdlmt 31 
                  nLA +l+++G++++
  KKY23713.1 631 ANLAHALRRLGRYDE 645
                 69***********97 PP

  == domain 8  score: -2.4 bits;  conditional E-value: 8.8
      TPR_17  17 nnLAelllknGdlmtA 32 
                 + ++ +ll++G++++A
  KKY23713.1 702 TSKGLVLLSLGRPREA 717
                 668999*******999 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       1.2   1.2e+03       4      23 ..     157     176 ..     156     177 .. 0.89
   2 !    8.9   0.1    0.0027       2.5       3      23 ..     189     209 ..     187     211 .. 0.90
   3 !    7.9   0.1    0.0057       5.4       4      27 ..     275     298 ..     273     300 .. 0.91
   4 ?   -1.1   0.0       4.2   3.9e+03       3      24 ..     470     491 ..     468     492 .. 0.79
   5 ?    2.7   0.1      0.26   2.5e+02      11      29 ..     512     530 ..     501     534 .. 0.76
   6 ?   -1.0   0.0         4   3.8e+03       6      25 ..     592     611 ..     591     612 .. 0.89
   7 ?    2.8   0.1      0.25   2.3e+02       5      28 ..     632     655 ..     630     657 .. 0.89
   8 ?   -1.3   0.0       4.7   4.5e+03       7      27 ..     705     725 ..     704     727 .. 0.83
   9 ?   -2.2   0.1       9.3   8.8e+03       6      21 ..     933     947 ..     932     948 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 1.2
                 HHHHHHHHH.HHHHHHHHHHH CS
       TPR_6   4 yklalsyrk.lgdtdkAleal 23 
                 ++la+ +++   ++++Al++l
  KKY23713.1 157 FWLAQVHFSsE-NYTRALALL 176
                 89******967.*****9986 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0027
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAleal 23 
                  y+++ +y+k++++++Al +l
  KKY23713.1 189 RYLAGHCYIKQNKYEQALSTL 209
                 799***************998 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0057
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealerli 27 
                 y+++l+y k +  d+A++ +++ +
  KKY23713.1 275 YLRGLCYAKRNAFDRARDCYKDAV 298
                 899******99*********9877 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 4.2
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAleale 24 
                 ++ ++  y++ g+ ++A++ + 
  KKY23713.1 470 YLAIGVYYLSIGKIAEARRFFS 491
                 566788888888******9986 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6  11 rklgdtdkAlealerlike 29 
                  + g++d+A++a+    + 
  KKY23713.1 512 AAEGEHDQAIAAYSTAARL 530
                 4468*********987765 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 4
                 HHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealer 25 
                 l+  ++ + +  +A++++++
  KKY23713.1 592 LGVILYHQSNLPAAIKLFQQ 611
                 7888999999********97 PP

  == domain 7  score: 2.8 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlik 28 
                 +la ++r+lg++d++l+ ++++++
  KKY23713.1 632 NLAHALRRLGRYDESLTEFDECLR 655
                 68999***99*******9999875 PP

  == domain 8  score: -1.3 bits;  conditional E-value: 4.7
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAlealerli 27 
                 +l +++lg++++A+ +l + +
  KKY23713.1 705 GLVLLSLGRPREAVVTLHEAV 725
                 67788899******9998776 PP

  == domain 9  score: -2.2 bits;  conditional E-value: 9.3
                 HHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAle 21 
                 +++++r + +++kA++
  KKY23713.1 933 RGKARRLG-QKTKAKT 947
                 56777755.9999986 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.27   2.5e+02      26      84 ..     171     232 ..     161     310 .. 0.70
   2 !   16.8   1.4   3.6e-06    0.0034      39     189 ..     500     655 ..     481     663 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.27
    TPR_MalT  26 qALallpeddllar.iaatavlGeasllqGdleaAlqalqeae..klarqadslhvallall 84 
                 +ALall   dl  r  a +++ G+ +  q++ e+Al++l e+   +l+ + +++++ l ++ 
  KKY23713.1 171 RALALLLGTDLIDRsPACRYLAGHCYIKQNKYEQALSTLGEHNptHLISSSHNSRRKLQHVN 232
                 79999999999999567789999999999999999999999986233466666665555555 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 3.6e-06
    TPR_MalT  39 riaatavlGeasllqGdleaAlqalqeaeklarqadslhv.allallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllv..lladllyE 134
                 ++aa    ++++  +G+ ++A +a+++a +l ++ + ++    ++ l + ++  a  +L +A+ +   +l+     + ++  l g +lv  +l+ +ly 
  KKY23713.1 500 SAAAWIGFAHTFAAEGEHDQAIAAYSTAARLFQGSHLPQLfLGMQHLALNNMSLAHEYLSAAHAMSSGSLRSNLPFDAAKDSLGGDPLVlnELGVILYH 598
                 344444456778899*****************999999874799***************************9999999999999966662269****** PP

    TPR_MalT 135 wndLeeAeqhlqeGielleql..epeaaldayvllarialaqGdleeAetllekaee 189
                 + +L +A +  q+++ l+ ql  +p a+++ ++ la+     G+ +e++t +++  +
  KKY23713.1 599 QSNLPAAIKLFQQSLVLATQLacSPIAWIATRANLAHALRRLGRYDESLTEFDECLR 655
                 ********************8899************************998887665 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   7.1e-06    0.0067     139     187 ..      52      97 ..      44     107 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.1e-06
                 E-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHH CS
     Pkinase 139 itDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvil 187
                 ++DFG a+  + +     ++    Y+APEvl + + ++kvD+W +G ++
  KKY23713.1  52 LSDFGEARVGDVQD---GIIQPNLYRAPEVLLGMKWTSKVDIWNVGTLC 97 
                 78999998877754...6777789**********************886 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.13   1.3e+02      89     143 ..     162     216 ..     141     222 .. 0.80
   2 ?    4.0   0.0     0.039        37      39      61 ..     470     492 ..     468     501 .. 0.88
   3 ?    3.2   0.0     0.069        65      31     103 ..     496     565 ..     491     729 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHCSSS---.HHHHHHHHHHHHHHHHHTT-HHHHHHHHCTS-GGG CS
        RPN7  89 wdlvskylekakellekggdwerknrlkvyeGlallairkfkeAaellldilstf 143
                  +  s++  +a +ll  ++  +r   ++  +G  ++++ k+++A ++l + ++t+
  KKY23713.1 162 VHFSSENYTRALALLLGTDLIDRSPACRYLAGHCYIKQNKYEQALSTLGEHNPTH 216
                 5555666666666666666688888999999*******************99997 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.039
                 HHHHHHHHHHCT-HHHHHHHHHT CS
        RPN7  39 kldlaehYlkigdleeAlkaysr 61 
                 +l+++ +Yl+ig+++eA + +s+
  KKY23713.1 470 YLAIGVYYLSIGKIAEARRFFSK 492
                 78999************999987 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.069
                 -HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCCC--SHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHCSS CS
        RPN7  31 gkeeirrakldlaehYlkigdleeAlkaysrireyctslkhkidmllnlirvaiffndwdlvskylekakell 103
                 ++   ++a+  +a+ ++  g++++A++ays +   + + +h  +++l + ++a+  n+++l+ +yl+ a+++ 
  KKY23713.1 496 MDPHSAAAWIGFAHTFAAEGEHDQAIAAYSTA-ARLFQGSHLPQLFLGMQHLAL--NNMSLAHEYLSAAHAMS 565
                 55566777888899999999999999999987.567777888888888877664..78888888888877765 PP

>> FTHFS  Formate--tetrahydrofolate ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.5   0.00044      0.41      98     131 ..     670     701 ..     661     705 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00044
                 SHHHHCST--SCEETTEEEESHHHHHTTTTSHHH CS
       FTHFS  98 lGPvfgiKGgAaGGGysqvvPmedinLhltGDih 131
                  GP fg+  +A+GGG s v   ed nL  tG ih
  KKY23713.1 670 HGPFFGMGPTATGGGNSAVSGYEDRNL--TGSIH 701
                 6***********************997..88888 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.9   3.7e+03      27      50 ..     184     207 ..     159     209 .. 0.57
   2 ?    4.3   0.1     0.048        45      34      57 ..     276     299 ..     270     304 .. 0.86
   3 ?    2.7   0.0      0.15   1.4e+02      25      64 ..     463     502 ..     449     505 .. 0.85
   4 ?   -2.5   0.3       6.4   6.1e+03       6      55 ..     512     561 ..     508     566 .. 0.79
   5 ?   -1.3   0.1       2.6   2.4e+03      32      56 ..     589     613 ..     584     640 .. 0.76
   6 ?   -1.2   0.1       2.4   2.3e+03      34      59 ..     632     657 ..     596     663 .. 0.82
   7 ?    0.4   0.0      0.75   7.1e+02      35      58 ..     704     727 ..     702     734 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.9
       TPR_9  27 ddpeerrdRGlllaqlGclsaAla 50 
                 ++p  r+  G ++ +++ +++Al 
  KKY23713.1 184 RSPACRYLAGHCYIKQNKYEQALS 207
                 455556666666666666666665 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.048
       TPR_9  34 dRGlllaqlGclsaAladLeayla 57 
                  RGl++a+++++  A+++   +++
  KKY23713.1 276 LRGLCYAKRNAFDRARDCYKDAVR 299
                 59***************9988775 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.15
       TPR_9  25 aPddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64 
                 aPd+p+ ++  G+ +   G +++A++ +     ++p+ ++
  KKY23713.1 463 APDEPYTYLAIGVYYLSIGKIAEARRFFSKSSLMDPHSAA 502
                 8************************988887777776665 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 6.4
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeay 55 
                 + e ++++a+a++     l+  ++   +  G+ +  l+++s A + L a+
  KKY23713.1 512 AAEGEHDQAIAAYSTAARLFQGSHLPQLFLGMQHLALNNMSLAHEYLSAA 561
                 66788899999999999998888888888888888888888888888776 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 2.6
       TPR_9  32 rrdRGlllaqlGclsaAladLeayl 56 
                 + + G++l+++ +l aA++ +++ l
  KKY23713.1 589 LNELGVILYHQSNLPAAIKLFQQSL 613
                 5688999999999999999888766 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 2.4
       TPR_9  34 dRGlllaqlGclsaAladLeaylala 59 
                   + +l +lG++ + l +++ +l++a
  KKY23713.1 632 NLAHALRRLGRYDESLTEFDECLRIA 657
                 55677889999999999999999776 PP

  == domain 7  score: 0.4 bits;  conditional E-value: 0.75
       TPR_9  35 RGlllaqlGclsaAladLeaylal 58 
                  Gl+l  lG++++A+  L  +++l
  KKY23713.1 704 KGLVLLSLGRPREAVVTLHEAVRL 727
                 69*************999888866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.55
# Mc/sec: 7002.99
//
Query:       KKY23714.1  [L=420]
Description: hypothetical protein UCRPC4_g02812 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1064  (0.0593452); expected 358.6 (0.02)
Passed bias filter:                      776  (0.0432818); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.51
# Mc/sec: 2463.15
//
Query:       KKY23805.1  [L=536]
Description: putative acetamidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-95  319.4   0.0    5.9e-95  318.9   0.0    1.2  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.9   0.0   3.3e-99   5.9e-95       1     450 [.      76     522 ..      76     523 .. 0.93

  Alignments for each domain:
  == domain 1  score: 318.9 bits;  conditional E-value: 3.3e-99
                 HHHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE CS
     Amidase   1 elveaflkrieavneklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgkT 99 
                 el++afl+r+  ++ ++n++ +++++ea+++A+ ld+  +   + gpLhG+PisvK++    g    a++ a+ ++p++ ++ + + L +aG v +++T
  KKY23805.1  76 ELTRAFLRRAVLAQYAVNCVTELMWDEAIERARYLDSLSE---PIGPLHGLPISVKEHHGMNGKTNHASYVAWIGQPSSPNS-INDALYDAGCVYYVRT 170
                 79**********************************9985...********************************9999665.6799************ PP

                 --SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB-....-SSTTT-EEEEEE CS
     Amidase 100 nmdefamgsstensvfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvv....alessldvvGpla 194
                 + ++++m+++++n+++g+t+NPw+++ t+GGSSGG++A++A +++++++G D+GGS+R PAs +g++G+KPt  r++ +g+     +  s l++ Gpl+
  KKY23805.1 171 TGPQTLMHLECNNNIYGRTVNPWNRNLTSGGSSGGEGALIAFKGSVFGLGGDIGGSVRGPASNNGIYGFKPTAKRIPLQGMKhvmdGKDSVLATFGPLT 269
                 **********************************************************************************99*9************* PP

                 SSHHHHHHHHHHHBS--TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHHHHHHHHH CS
     Amidase 195 rsvedlalllrvilgedpkdstssvipeesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelpsleealslyylilv 293
                 +s e+++l++++il  +p++ + s i+   + +++e  k+  +l++++ ++dg ++++p+  ra++ +++a+++aG+evv++e+ ++++a++++  +++
  KKY23805.1 270 QSRETINLFMKTILDTEPWRFDPSLIV---KPWTPEPIKT--PLKVAIEWHDGIVKPHPPAIRAMKIVAEACKAAGMEVVDWEPLDHAKAWEIVSGLYF 363
                 ************************987...6677776666..9******************************************************** PP

                 HHHHHHTTT-SSSSS---SS-SCCCCCCCH.HHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCC.......BSEEEEESSSS CS
     Amidase 294 aeassnlarylgvryerlsetkvlsellpk.sraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafee.......lDvllsPtapt 384
                  +++++ +                + +l++   + +l++++    +  ++++ +e     y++ + +r+ +r ++ak++ +       +Dv+++Pt+p 
  KKY23805.1 364 PDGGEACM----------------APILEAgEPSLPLTDYIIKEQPNVKNRNMHE-----YWELCVERDSYRGAYAKHWSQtaqsgkeVDVIICPTTPG 441
                 ****8866................4444430344555665555555555555555.....8999999999*********99999*************** PP

                 S--BCCCCCHHHCSHHHHHGCCTTT...HHHHHTT--EEE.....EECCCCT.............TECEEEEEEESTT-HHHH CS
     Amidase 385 paprlgekdktidsytvlynlldftavvvpvnlaglpals.....vpagksed............glPvGvqvigkafqeetl 450
                 +ap ++ +++  + yt+ +nlld++avv+pv++++ + ++     vp++++++            g+Pv+++++g++  +e++
  KKY23805.1 442 AAPLHDTARY--WPYTSQWNLLDYPAVVFPVTFVDVEKDKkeegyVPMNDQDKynydlyepekwvGAPVSLTLVGRRQMDEKV 522
                 ********87..89*************************999999999999889***********************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3425.81
//
Query:       KKY23806.1  [L=496]
Description: putative membrane transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-08   33.9   8.0    2.2e-08   33.9   8.0    2.3  2  UNC-93       Ion channel regulatory protein UNC-93
    5.6e-07   28.8  29.2     0.0031   16.5  28.7    2.1  2  MFS_1        Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.14   11.7   0.2       0.24   10.9   0.2    1.2  1  Mu-like_Pro  Mu-like prophage I protein
       0.19   12.1   2.8         13    6.2   0.0    3.2  3  ERGIC_N      Endoplasmic Reticulum-Golgi Intermediate Compart
          1    9.3  11.7        2.1    8.3   2.3    3.7  3  DUF5325      Family of unknown function (DUF5325)
        6.6    6.8  10.5       0.42   10.7   0.8    3.0  3  GWT1         GWT1


Domain annotation for each model (and alignments):
>> UNC-93  Ion channel regulatory protein UNC-93
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   8.0   7.5e-12   2.2e-08      43     153 ..      52     168 ..      46     172 .. 0.83
   2 ?   -4.4   0.8       4.9   1.5e+04      73      83 ..     183     193 ..     174     199 .. 0.44

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 7.5e-12
      UNC-93  43 laiiyavftvanlvapsvvdlltakwalvigallyaifqlgFlllnk....yylyissallGvgaallwtgqG..syLsenstretiernssilwallk 135
                  ai+yavftv+  +  s++++l +k++++ig + y ++  g  ++ +    ++ y++ a+lG+ a  lwt+ G  ++  ++ +++   +  + +w l++
  KKY23806.1  52 NAILYAVFTVFGWIGGSILNILKPKITIMIGVIGYPLYVGGLWYFDRvghaWFPYFAGAVLGATAGCLWTAGGfiQFAYAQEDEKALLKFITWQWVLTS 150
                 69*************************************9988875333339*******************9944455556666777788888888888 PP

      UNC-93 136 sslliGgiflilvfqlkt 153
                 +   iG+++ + v +++t
  KKY23806.1 151 FGGTIGSLIAFGVNFNQT 168
                 888888888877766665 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 4.9
      UNC-93  73 gallyaifqlg 83 
                   ++ a+f++ 
  KKY23806.1 183 VIMCSAFFTAF 193
                 23333333333 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5  28.7     1e-06    0.0031      29     292 ..      43     311 ..      12     324 .. 0.67
   2 !   11.0   0.0   4.8e-05      0.14      84     173 ..     341     436 ..     330     492 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1e-06
       MFS_1  29 ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.f..asslwlllvlrvlqGlgagalfpagaaliadwfpkeergra.. 122
                 +s s+++l  ++ ++++ v+  ++G++ + + ++ ++++g++++ l +  l+ f  + + w+ +++ ++ G++ag+l++ag+ +  +++ ++e+++   
  KKY23806.1  43 SSQSVASLTNAILYAVFTVFGWIGGSILNILKPKITIMIGVIGYPLYVGGLWyFdrVGHAWFPYFAGAVLGATAGCLWTAGGFIQFAYAQEDEKALLkf 141
                 68888999999999999999999************************555554555466677888899999999***************9966664411 PP

       MFS_1 123 igllsagfslGailgpllgglla.sslg....Wravfyilaivsllafvlfllllpeepperkrkspkeee...kgtgpaplvpawkallkdpvlwill 213
                 i +  + +s+G  +g l++  +   + +      av++++ ++++ af   ++++  +p++  r+ ++      k t+  +l+  +  l++d      +
  KKY23806.1 142 ITWQWVLTSFGGTIGSLIAFGVNfNQTSstgvSNAVYVVFIVIMCSAFF-TAFFFIIDPKKVVRDDGTHIAiftKATVMNELKG-LFVLFTDI----KI 234
                 4555556666666666665555434444888777788888888888866.4466666666666665544412333333333333.55555555....88 PP

       MFS_1 214 ialllfffgfsglltllplylqevlgls.glllaglllallalvgailallagrlsdr.lgrrrrlllallllllaalgla 292
                 ial+ + f+  + l+ll +     + ++    ++     l+++++++  ll+++++d  + + rr    l++ +++++ la
  KKY23806.1 235 IALIPAIFVAEMDLALLSS--INAYYFNlRTRSLN--NVLFQFIMVPCPLLLAYIMDTsYIKSRRVRGLLGASIMGSITLA 311
                 8888888899996666666..45555552134444..7799999999999******8844444555555555555555544 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 4.8e-05
       MFS_1  84 slwlllvlrvlqGlgagalfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllll.....p 173
                  +++ ++l +l+G+ ++++  +++  + +++++  + +r+ gl+ +++slG+ +  +l +  +s+      + + y++++v+l++++   ++      +
  KKY23806.1 341 AFPAGFILYLLSGIIYASYQIVVQWTLGALTNDpVQCARYAGLFKGTTSLGMCISFVLDSRNISYMRqliVQFTLYAVGLVCLMCII---WFCvnetnY 436
                 455889999************************99************************944433334449999**********988...554444440 PP

>> Mu-like_Pro  Mu-like prophage I protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   7.9e-05      0.24      57     121 ..     314     374 ..     309     376 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.9e-05
  Mu-like_Pro  57 apAAGWikelewregdGLfarvewTerAkeyieakeYrYlSpvflydkttgevlellsaALTntP 121
                  a  A+Wik  ++  ++GL  +v+wT++A     a+   Yl   + y +    v++ + +ALTn+P
   KKY23806.1 314 AGLAAWIKYNSIDRNNGLTPNVDWTDSAF---PAGFILYLLSGIIYAS-YQIVVQWTLGALTNDP 374
                  66799***8888889***********996...5788889877777875.8899999999999999 PP

>> ERGIC_N  Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.3     0.027        80      16      56 ..     166     206 ..     163     221 .. 0.77
   2 ?   -0.1   0.0      0.42   1.3e+03      69      86 ..     272     289 ..     232     292 .. 0.81
   3 ?    6.2   0.0    0.0044        13      24      48 ..     418     442 ..     413     478 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.027
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX-EEEEEE-- CS
     ERGIC_N  16 qktlsGgiislvcillilfLllselteylttevkeelvvdk 56 
                 ++t+s g+   v +++i++++ + +t+++     +++v d+
  KKY23806.1 166 NQTSSTGVSNAVYVVFIVIMCSAFFTAFFFIIDPKKVVRDD 206
                 58999999999999999999999999998775555555554 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.42
                 EE.SS-GGGEEEEEEETT CS
     ERGIC_N  69 tfpalpCellsldvqDes 86 
                 +f  +pC ll   ++D s
  KKY23806.1 272 QFIMVPCPLLLAYIMDTS 289
                 46669*****99999976 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0044
                 XXXXXXXXXXXXXXXXXXXX.XXX- CS
     ERGIC_N  24 islvcillilfLllselteylttev 48 
                 + lvc+++i++++++e++++l+ +v
  KKY23806.1 418 VGLVCLMCIIWFCVNETNYFLEENV 442
                 5689*****************8776 PP

>> DUF5325  Family of unknown function (DUF5325)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.3    0.0007       2.1       2      50 ..     140     190 ..     139     207 .. 0.86
   2 ?   -1.0   0.2      0.57   1.7e+03       1      27 [.     219     244 ..     219     253 .. 0.64
   3 ?    5.4   0.1    0.0055        16       1      33 [.     406     438 ..     406     445 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0007
     DUF5325   2 kkikwifllyAilAva.slmgiGiaigersilgiiiai.valivvmGlGFk 50 
                 k i w+ +l ++ +++ sl+++G+   ++s  g+  a+ v++iv+m + F 
  KKY23806.1 140 KFITWQWVLTSFGGTIgSLIAFGVNFNQTSSTGVSNAVyVVFIVIMCSAFF 190
                 5689********998758***********9999876653889999998886 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.57
     DUF5325   1 MkkikwifllyAilAvaslmgiGiaig 27 
                 M++ k +f+l+  + +++l+   i+++
  KKY23806.1 219 MNELKGLFVLFTDIKIIALIP-AIFVA 244
                 888888888887555555543.45555 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0055
     DUF5325   1 MkkikwifllyAilAvaslmgiGiaigersilg 33 
                 M++   +f lyA+  v  ++ i + + e++ ++
  KKY23806.1 406 MRQLIVQFTLYAVGLVCLMCIIWFCVNETNYFL 438
                 8888899*******999999**9***9999876 PP

>> GWT1  GWT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.8   0.00014      0.42      48     107 ..     136     199 ..     106     232 .. 0.63
   2 ?   -0.4   0.9      0.39   1.2e+03      51      96 ..     235     280 ..     229     297 .. 0.73
   3 ?    0.8   0.1      0.16   4.8e+02      91     108 ..     410     428 ..     345     484 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
        GWT1  48 ketlkllikllllsilllllllllelyvef...vSRrlaNlpYvlwvvalnltllllfl.liel 107
                 k +lk +++ ++l+ +  ++  l+++ v+f   +S  + N+ Yv+++v ++ +++++f+ +i+ 
  KKY23806.1 136 KALLKFITWQWVLTSFGGTIGSLIAFGVNFnqtSSTGVSNAVYVVFIVIMCSAFFTAFFfIIDP 199
                 4444444444444444444434444444445558**********99887776666555538887 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.39
        GWT1  51 lkllikllllsilllllllllelyvefvSRrlaNlpYvlwvvalnl 96 
                 ++l+  ++++ + l ll  + ++y++   R l N+ + +++v + l
  KKY23806.1 235 IALIPAIFVAEMDLALLSSINAYYFNLRTRSLNNVLFQFIMVPCPL 280
                 5666667777777888888889999999999999999888776544 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.16
        GWT1  91 vvalnltllllflliel.l 108
                 +v ++l+ + l++l+ +  
  KKY23806.1 410 IVQFTLYAVGLVCLMCIiW 428
                 2333333333333222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1012  (0.0564449); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.35s 00:00:01.03 Elapsed: 00:00:00.52
# Mc/sec: 2862.88
//
Query:       KKY23807.1  [L=529]
Description: putative transcription factor cys6 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-06   28.8   8.6      1e-06   28.8   8.6    1.9  2  Zn_clus         Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
      0.023   13.5   0.4      0.052   12.3   0.1    1.6  2  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   8.6   1.1e-10     1e-06       1      36 [.      23      58 ..      23      62 .. 0.91
   2 ?   -3.2   0.1       1.1   9.6e+03      11      16 ..     404     409 ..     404     411 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.1e-10
                SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTC CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfyses 36
                ++C +C+ ++vKCd+ kP+C +C + + +C  y + 
  KKY23807.1 23 TGCLTCKIRRVKCDETKPVCIRCSSFGRKCDGYAQW 58
                58****************************988775 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.1
                 ---STS CS
     Zn_clus  11 vKCdak 16 
                 v+Cd++
  KKY23807.1 404 VRCDQH 409
                 799986 PP

>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   5.8e-06     0.052       3     131 ..     109     230 ..     107     244 .. 0.76
   2 ?   -2.2   0.0      0.15   1.3e+03     314     340 ..     422     448 ..     391     462 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.8e-06
  Fungal_trans_2   3 ldyyldnvapllspvpessnpfrkvllplalsnkallhallalsafhlqskgpkdslereakrykslalkelqealaelsstlsrnekykdiLaa 97 
                     ++y++++++pll  v+     fr+ +l l  +n+ +   +la+s++h++ + p + + +++  +  +  k l++ +   + +         + a+
      KKY23807.1 109 FQYFCEKTVPLLDAVSLV-PFFRESVLLLSDNNDIIKSLVLAISCTHQSISRPTQDVAKQRALFFAHYNKALRHMIGATNPNIG-----VVVTAC 197
                     69***************8.67899999999999******************999987777777777777777777888888888.....333333 PP

  Fungal_trans_2  98 iLllcsieissgdvsdwrvhLeaatsliksrggs 131
                     +++    +i+    ++   h+ aa +++++++  
      KKY23807.1 198 TMFAACDDICGRG-HSALRHIAAAFAIVHTYQMK 230
                     3444444566555.67888888888888777666 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.15
  Fungal_trans_2 314 WplFiaGceavdeddRdfvrrrleele 340
                      plF +++ + +++ R++ ++ l +l 
      KKY23807.1 422 PPLFLVAIRCREPQTRRLALQQLYRLR 448
                     599*********988887777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.47
# Mc/sec: 3361.00
//
Query:       KKY23808.1  [L=579]
Description: putative peptidase family m20 m25 m40 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-30  104.5   0.0    1.5e-29  103.2   0.0    1.7  1  Peptidase_M20  Peptidase family M20/M25/M40
    6.5e-09   35.7   0.0    1.4e-08   34.7   0.0    1.6  1  M20_dimer      Peptidase dimerisation domain
      0.002   17.8   0.1     0.0089   15.7   0.1    2.0  1  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.0   2.5e-33   1.5e-29       1     206 [.     150     571 ..     150     572 .. 0.83

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 2.5e-33
                    EEEEES-BSSTTCGGGSSS.TTSEEETTT.EEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SS.EEEEEEESTTSSTT.THHHHHHHHHHT..... CS
                    xxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.xxxxxxxxxxxx..... RF
  Peptidase_M20   1 llgsHlDvVpeeetdgwtt.pfslteedG.klyGrGaddmkggvlaalealralkdegikpkg.tivllfqpdEEggr.gGakalleglee..... 87 
                    ll++H+DvVp ++ + wt+ pfs++ + G +l+GrGa+d+k++++a++ al++l  +   +++ ti l+f +dEE+++ +Ga++++++le      
     KKY23808.1 150 LLAAHQDVVPVADPSTWTYpPFSAHYD-GtYLWGRGASDDKNSLVALMSALETLLSTASWTPHrTIILAFGFDEECSGrRGAGSIAKHLESvwgng 244
                    699*******666669*********88.66**************************99998888***********755599988888655323334 PP

                    .........TTCESEEEEEEEESSSBTCHSTETEEEE........................................................... CS
                    .........xxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................... RF
  Peptidase_M20  88 .........rekvdavfelhieepgileagklaigvv........................................................... 115
                             +               +   + l+ +++                                                           
     KKY23808.1 245 svamildegG---------------MGL-QLLDDTLYalpavlekghvdikfvlyingghssipyphtgigviseivvaleshpyeprltkssply 324
                    4444444442...............333.33334444444444444444444588888888888888888899*********************** PP

                    ................................................................................................ CS
                    ................................................................................................ RF
  Peptidase_M20 116 ................................................................................................ 115
                                                                                                                    
     KKY23808.1 325 nhlvcqaryspdaapkitellkhddlealaqelvsidrptqfrlqtsqavdiihggvkinampevitlqvnyrvaphnsipeiqknvikyiqpive 420
                    ************************************************************************************************ PP

                    .................................................EEEEEEEEEESHEEEC...CHHHHHHHHHHHHHHHTSC..EEEEEES CS
                    .................................................xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxx..xxxxxxx RF
  Peptidase_M20 116 .................................................kvevelleggapvtln...dsplvkalaeaaeelfgek..velivsg 157
                                                                       + ++  + ap+  +    sp+++a++ +++  fg      +++s 
     KKY23808.1 421 kyslvveafegdqefwdfanedlsdlipsggavmddvrpmyevsyngtlVLSASQKTAVAPT--SptvGSPIWDAFSGVIQHSFGFPggKVVPASE 514
                    **************************************988887766442222222333333..23589***************655534444666 PP

                    ..SSBHTHHHH.TTT.EEEEEEESS.G...GCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    ..xxxxxxxxx.xxx.xxxxxxxxx.x...xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 158 ..pggtdarff.agi.ptvmifgpg.s...glaHspnEyvdledlekgikvlarlle 206
                      +g+td+r++   + ++v+   p  +    +aH+++E+++++++ +++ ++++l++
     KKY23808.1 515 lmTGNTDTRHYlTDLsKNVYRWTPTrQgytFNAHTVDEHINMKAHMEALTFYYDLIR 571
                    899********8666557766665542478***********************9986 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   2.3e-12   1.4e-08       3     108 ..     272     422 ..     270     423 .. 0.92

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 2.3e-12
                 B-EEEEEEEEEE-B-EEGG..-TTTTB-HHHHHHHHHHCSCTTEEC................................................TCCTC CS
   M20_dimer   3 hkGlaggkitvkgkagHsg..apgagaNAieklarllaeledeegdia...........................................eerslprt 56 
                 +kG+++ k    +++gHs+  +p+ g+  i + + +l++ + e++ ++                                           ++++  +t
  KKY23808.1 272 EKGHVDIKFVLYINGGHSSipYPHTGIGVISEIVVALESHPYEPRLTKssplynhlvcqaryspdaapkitellkhddlealaqelvsidrPTQFRLQT 370
                 799*****************99****7777777777777777766555*******************************************999***** PP

                 CCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSCCSTT CS
   M20_dimer  57 tlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeieeilekeaped 108
                 + +v +i+gG ++n+ p+  +++++ R+ p+ +  e+++++ ++++   +++
  KKY23808.1 371 SQAVDIIHGGVKINAMPEVITLQVNYRVAPHNSIPEIQKNVIKYIQPIVEKY 422
                 ********************************************99887765 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   1.5e-06    0.0089      17      83 ..     171     235 ..     135     256 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.5e-06
                    EEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHH.GGCCSSEEEEEEEESSCSG.SSHHHHHHHH CS
  Peptidase_M28  17 lgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaa.sgsrpkrgvrflffdaEEa.gllGSkafak 83 
                    ++AHyD ++   g    GA D+  + +al+  +++l +  + +p+r+++++f   EE  g  G+   ak
     KKY23808.1 171 FSAHYDGTYL-WGR---GASDDKNSLVALMSALETLLStASWTPHRTIILAFGFDEECsGRRGAGSIAK 235
                    5788887776.566...998887666666666655544377799********88888657788877774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 3466.46
//
Query:       KKY23809.1  [L=312]
Description: putative mitochondrial phosphate carrier protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-47  157.0   4.3    3.4e-16   58.9   0.1    3.1  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.1   1.9e-20   3.4e-16       4      94 ..      25     110 ..      22     113 .. 0.93
   2 !   55.2   0.0   2.9e-19   5.1e-15      11      96 ..     126     207 ..     119     208 .. 0.94
   3 !   43.5   0.2   1.3e-15   2.3e-11       7      93 ..     223     304 ..     218     306 .. 0.95

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 1.9e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                  +++ +l G +a+  +++ +tPld+vKtr q++++ +k+      ld  kkiy +eG+rg + G++p++++++ +   k ++ye +k ++ 
  KKY23809.1  25 YFASCMLGGIIACGPTHTSVTPLDLVKTRRQVDSSLYKS-----NLDGWKKIYGKEGVRGIFFGWSPTFVGYSFQGLGKYGFYEIFKYVYG 110
                 57788899999*************************999.....69****************************************98775 PP

  == domain 2  score: 55.2 bits;  conditional E-value: 2.9e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
   Mito_carr  11 aGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllkk 96 
                 a++ a  +a ++ +P++ +K+r+qt    ++++    +++  +k++ +eG+ gly+Gl p + r++p++++kf+++e + + ++k+
  KKY23809.1 126 ASASAEFIADVLLCPFEAIKVRMQTTLPPYAST----LREGWSKVVAKEGFGGLYKGLYPLWGRQIPYTMCKFATFEECVKAIYKY 207
                 778999***********************9884....9*****************************************9999885 PP

  == domain 3  score: 43.5 bits;  conditional E-value: 1.3e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   7 kellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                  ++ aG +ag++ ++v +P dv+  +l +++k ++      + +++ +iy + G++gl+ Gl ++++++   ++ ++++y+t+k +l
  KKY23809.1 223 VSFTAGYIAGIACAVVSHPADVMVSKLNSDRKPGEG-----AGKAMTRIYGNIGFSGLWNGLPVRIVMIGTLTGFQWLIYDTFKVWL 304
                 6899*****************************999.....77999*************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2111.75
//
Query:       KKY23810.1  [L=609]
Description: putative f-box and wd repeat-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-39  133.5  22.7    1.1e-06   29.3   0.1    7.6  7  WD40         WD domain, G-beta repeat
      2e-10   40.9   0.8      0.022   15.1   0.0    5.6  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    1.5e-09   37.6   0.4    2.9e-09   36.6   0.4    1.5  1  F-box-like   F-box-like
    3.4e-06   26.0   3.7       0.24   10.0   0.0    5.7  6  Nup160       Nucleoporin Nup120/160
    0.00011   21.6   0.0      0.027   13.8   0.0    2.8  3  WD40_like    WD40-like domain
    0.00015   21.5   0.3    0.00037   20.3   0.3    1.7  1  F-box        F-box domain
     0.0017   17.4   2.4        7.2    5.4   0.0    4.1  4  PALB2_WD40   Partner and localizer of BRCA2 WD40 domain
  ------ inclusion threshold ------
      0.021   14.4   1.8      0.062   12.9   1.2    2.0  1  PQQ_2        PQQ-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   1.1     5e-07    0.0011       1      38 []     286     322 ..     286     322 .. 0.83
   2 !   28.6   0.6   7.9e-10   1.8e-06       3      38 .]     328     363 ..     326     363 .. 0.87
   3 !   20.8   0.7   2.2e-07   0.00049       2      38 .]     368     403 ..     367     403 .. 0.90
   4 !   29.3   0.1   4.8e-10   1.1e-06       1      38 []     407     443 ..     407     443 .. 0.91
   5 !   19.8   0.2   4.7e-07     0.001       1      38 []     447     483 ..     447     483 .. 0.82
   6 !   24.7   0.1   1.3e-08     3e-05       2      37 ..     488     522 ..     487     523 .. 0.84
   7 ?   -0.6   0.0       1.3   2.9e+03       1      34 [.     527     561 ..     527     562 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 5e-07
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g+++rtltGH  +v+++   p  ++l+sG+ D+ vr+W+
  KKY23810.1 286 GDHQRTLTGHvMGVWAM--VPWDDLLVSGGCDRDVRVWN 322
                 5789******7778877..66667799**88*******8 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 7.9e-10
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  ++tl+GH s v++l+ s+ ++ + sGs+D t+riWd
  KKY23810.1 328 SIHTLRGHtSTVRCLKMSDANTAI-SGSRDTTLRIWD 363
                 68******777****988777776.8**********9 PP

  == domain 3  score: 20.8 bits;  conditional E-value: 2.2e-07
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  c  +l GH  sv++l    +g++++sGs+D t riW+
  KKY23810.1 368 VCKNVLVGHqASVRCL--GIHGDLVVSGSYDTTARIWS 403
                 6888999**888**99..889999*************5 PP

  == domain 4  score: 29.3 bits;  conditional E-value: 4.8e-10
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g+cl+tl+GH s ++++    dg  +a+Gs D +vriWd
  KKY23810.1 407 GRCLKTLSGHfSQIYAI--AFDGVRIATGSLDTSVRIWD 443
                 68********777****..558889*************9 PP

  == domain 5  score: 19.8 bits;  conditional E-value: 4.7e-07
                 TEEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 g+c+ +l GH+s v  l  +  g+ l++G+ Dg+vr+W+
  KKY23810.1 447 GNCTAILQGHTSlVGQL--QMRGDTLVTGGSDGSVRVWS 483
                 68********6658666..667777999988*******5 PP

  == domain 6  score: 24.7 bits;  conditional E-value: 1.3e-08
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 q+++ l +H +svtsl  + d + ++sG+ Dg v+iW
  KKY23810.1 488 QPVHRLAAHdNSVTSL--QFDDSRIVSGGSDGRVKIW 522
                 899******999****..555555779977******* PP

  == domain 7  score: -0.6 bits;  conditional E-value: 1.3
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtv 34 
                 gq++r+l+     v+ +af  ++a ++++   +t+
  KKY23810.1 527 GQLVRELSQPaEAVWRVAFEEEKAVVMASRASRTI 561
                 5778888866556******9999999877556666 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.1   2.4e+03      39      68 ..     258     285 ..     241     305 .. 0.77
   2 !    6.7   0.1    0.0041       9.1      48      89 ..     304     344 ..     270     347 .. 0.86
   3 ?    4.2   0.0     0.024        53      36      87 ..     375     423 ..     344     428 .. 0.74
   4 ?    0.8   0.0      0.28   6.3e+02      48      78 ..     425     455 ..     418     466 .. 0.83
   5 !   15.1   0.0   9.7e-06     0.022      47      90 ..     464     506 ..     453     508 .. 0.90
   6 !   10.7   0.0   0.00023      0.51      40      89 ..     499     545 ..     497     548 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.1
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldae 68 
                  + v+sL+  p  k ++va ++ ++++++ +
   KKY23810.1 258 GVVTSLHLTP--KYIVVALDNAKIHVFSTS 285
                  5566666555..689999999999988764 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0041
  ANAPC4_WD40  48 pdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  p + lL+ +  d  vr+ ++ +g+ +h+l+ +++ +v cl+ 
   KKY23810.1 304 PWDDLLVSGGCDRDVRVWNMATGHSIHTLRGHTS-TVRCLKM 344
                  557899***********************99988.6*99985 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.024
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                  +++ +vr+L     g l + +  d++ r+ ++++g+++++ls + ++ +  +
   KKY23810.1 375 GHQASVRCLG--IHGDLVVSGSYDTTARIWSISEGRCLKTLSGHFSQ-IYAI 423
                  4566677766..46889999******************999877663.6555 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.28
  ANAPC4_WD40  48 pdgklLavaysdgevrlldaesgkvvhslsv 78 
                   dg  +a +  d++vr+ d ++g++   l+ 
   KKY23810.1 425 FDGVRIATGSLDTSVRIWDPSTGNCTAILQG 455
                  588999****************998776655 PP

  == domain 5  score: 15.1 bits;  conditional E-value: 9.7e-06
  ANAPC4_WD40  47 kpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  ++ g  L+ + sdg+vr+ + e+ + vh l +++++ vt+l++ 
   KKY23810.1 464 QMRGDTLVTGGSDGSVRVWSLEKMQPVHRLAAHDNS-VTSLQFD 506
                  567999***************************995.***9986 PP

  == domain 6  score: 10.7 bits;  conditional E-value: 0.00023
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  +v+sL++  d++ ++ + sdg+v++ + ++g++v++ls  +e av  + +
   KKY23810.1 499 SVTSLQF--DDSRIVSGGSDGRVKIWELKTGQLVRELSQPAE-AVWRVAF 545
                  6777765..8899***********************987766.4666655 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.4   1.3e-12   2.9e-09       2      46 ..     106     150 ..     105     152 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1.3e-12
  F-box-like   2 srLPdEiLlqIFsyL.ppsdLlrlalVCrrWrrvaldtplLWrrlv 46 
                  +LP E+ l+I+s++ +p++L+r+++V+ rW+++ +d+   W+ l+
  KKY23810.1 106 TYLPIELSLRILSFIdDPKTLARASQVSTRWHELLNDD-MTWKLLC 150
                 58*************8899******************9.***9887 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.14   3.1e+02     238     255 ..     314     331 ..     299     335 .. 0.83
   2 !   10.0   0.0   0.00011      0.24     222     252 ..     338     369 ..     335     374 .. 0.89
   3 ?    3.2   0.0     0.012        27     221     255 ..     378     412 ..     370     419 .. 0.85
   4 ?    2.6   0.0     0.019        42     233     255 ..     430     452 ..     417     464 .. 0.89
   5 ?    1.5   0.0      0.04        89     231     254 ..     468     491 ..     456     508 .. 0.82
   6 ?    3.2   0.0     0.013        28     233     255 ..     510     532 ..     494     562 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.14
                 TT-EEEEEETTTTEEEEE CS
      Nup160 238 rdgkLrvWnlltgkclat 255
                  d+ +rvWn +tg  + t
  KKY23810.1 314 CDRDVRVWNMATGHSIHT 331
                 5999********987665 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00011
                 ET......TTTEEEEEETT-EEEEEETTTTEE CS
      Nup160 222 avavvei.gqtylfalsrdgkLrvWnlltgkc 252
                 +v++ ++ + +++ + srd +Lr+W+l tg c
  KKY23810.1 338 TVRCLKMsDANTAISGSRDTTLRIWDLPTGVC 369
                 5677777899*******************998 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.012
                 EET.....TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 221 vavavveigqtylfalsrdgkLrvWnlltgkclat 255
                 ++v++  i+ +++++ s d + r+W+++ g+cl t
  KKY23810.1 378 ASVRCLGIHGDLVVSGSYDTTARIWSISEGRCLKT 412
                 56666666888999999***************988 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.019
                 EEEEETT-EEEEEETTTTEEEEE CS
      Nup160 233 lfalsrdgkLrvWnlltgkclat 255
                 +++ s+d  +r+W+ +tg c+a 
  KKY23810.1 430 IATGSLDTSVRIWDPSTGNCTAI 452
                 67779***************986 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.04
                 TEEEEEETT-EEEEEETTTTEEEE CS
      Nup160 231 tylfalsrdgkLrvWnlltgkcla 254
                 ++l++  +dg +rvW+l+ ++++ 
  KKY23810.1 468 DTLVTGGSDGSVRVWSLEKMQPVH 491
                 66777779**********999875 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.013
                 EEEEETT-EEEEEETTTTEEEEE CS
      Nup160 233 lfalsrdgkLrvWnlltgkclat 255
                 +++  +dg++++W l+tg++++ 
  KKY23810.1 510 IVSGGSDGRVKIWELKTGQLVRE 532
                 555568**************986 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.64   1.4e+03      85     120 ..     260     295 ..     244     302 .. 0.81
   2 !    6.4   0.0    0.0021       4.8      14     128 ..     308     424 ..     302     432 .. 0.79
   3 !   13.8   0.0   1.2e-05     0.027       2     109 ..     419     524 ..     418     538 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.64
   WD40_like  85 istvkviddklliGtnkGsiyvfskdlqleevllgq 120
                 ++  + + + +++  ++ +i+vfs     + +l g+
  KKY23810.1 260 VTSLHLTPKYIVVALDNAKIHVFSTSGDHQRTLTGH 295
                 677888889999999999999999887788887777 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0021
   WD40_like  14 lilyGgkddkctvlkleslesvsivesfedSvifvklldddlilvvtlDGtillslleneeeveneki..eedistvkviddklliGtn..kGsiyvfs 108
                 l++ Gg d  ++v ++ +++s+  + + +  v   k+ d +  + ++ D t+   +l  +   +n  +  +  + +  + +d ++ G++  +  i+  s
  KKY23810.1 308 LLVSGGCDRDVRVWNMATGHSIHTLRGHTSTVRCLKMSDANTAISGSRDTTLRIWDLPTGV-CKNVLVghQASVRCLGIHGDLVVSGSYdtTARIWSIS 405
                 6788999*********************************************988888887.5555441145566677778888888752255677777 PP

   WD40_like 109 kdlqleevllgqsseIkeik 128
                 +   + ++l+g+ s+I  i 
  KKY23810.1 406 EG-RCLKTLSGHFSQIYAIA 424
                 77.78888889999888776 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 1.2e-05
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilvvtlDGtillsllenee.evenekieedistvkviddklliGt 99 
                 +iY+i +  +g  i+ G+ d  +++ +  +++   i+++ + S++   ++ +d ++ +  DG +    le+ + + +    ++ ++  + +d +++ G+
  KKY23810.1 419 QIYAIAF--DGVRIATGSLDTSVRIWDPSTGNCTAILQGHT-SLVGQLQMRGDTLVTGGSDGSVRVWSLEKMQpVHRLAAHDNSVTSLQFDDSRIVSGG 514
                 6899887..9999******************9999999977.566666789999999*******99999999944455678899*************** PP

   WD40_like 100 nkGsiyvfsk 109
                 + G + +++ 
  KKY23810.1 515 SDGRVKIWEL 524
                 ***9998765 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.3   1.6e-07   0.00037       2      47 ..     104     150 ..     103     151 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.6e-07
                 HHHHS-HHHHHHHHHTS-HHH.HHHHCTT-HHHHHHHTTHHHHHHHH CS
       F-box   2 tlsrLPsevlrhILerLplsd.llalrrVSkgwrilidsdrlwcksi 47 
                 ++  LP e+ + IL++ +    l ++++VS++w+ l+++d  w+  +
  KKY23810.1 104 PFTYLPIELSLRILSFIDDPKtLARASQVSTRWHELLNDDMTWKLLC 150
                 5666999999999999876557******************9998766 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.042        94     191     217 ..     307     333 ..     296     344 .. 0.84
   2 ?    1.9   0.1     0.037        83     302     321 ..     357     376 ..     343     403 .. 0.83
   3 !    4.4   0.2    0.0067        15     302     350 ..     437     482 ..     397     483 .. 0.78
   4 !    5.4   0.0    0.0032       7.2     193     217 ..     510     534 ..     497     551 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.042
  PALB2_WD40 191 dallgttvlnniviWnlktGqllkkie 217
                 d l++   + ++ +Wn++tG  +++++
  KKY23810.1 307 DLLVSGGCDRDVRVWNMATGHSIHTLR 333
                 7789999999**********9888765 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.037
  PALB2_WD40 302 GaiavWdlllghctalllpe 321
                  ++ +Wdl+ g c+ +l+ +
  KKY23810.1 357 TTLRIWDLPTGVCKNVLVGH 376
                 4789**********999865 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0067
  PALB2_WD40 302 GaiavWdlllghctalllpesdesWslv.rWsgtdsqllaGqkdGsvlvy 350
                  ++ +Wd   g+cta+l  ++    slv +      +l++G  dGsv v+
  KKY23810.1 437 TSVRIWDPSTGNCTAILQGHT----SLVgQLQMRGDTLVTGGSDGSVRVW 482
                 4799************98655....6662334455678889999998876 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.0032
  PALB2_WD40 193 llgttvlnniviWnlktGqllkkie 217
                 +++   + ++ iW+lktGql+++++
  KKY23810.1 510 IVSGGSDGRVKIWELKTGQLVRELS 534
                 67777788999*********99875 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.2   2.8e-05     0.062      12     151 ..     397     537 ..     387     564 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.8e-05
       PQQ_2  12 tGaelWrvdlar.......plgggvsravlsggtlfvatgggrlvaldaatGkvlWettlegpvvgaplvaegrvvvvasdgqlialdaedGkrlWstq 103
                 t a++W+ + +r        ++ + + a+ +g ++++++    +  +d++tG  +   +    +vg   + ++ +v   sdg+++  + e  + +++ +
  KKY23810.1 397 TTARIWSISEGRclktlsgHFSQIYAIAF-DGVRIATGSLDTSVRIWDPSTGNCTAILQGHTSLVGQLQMRGDTLVTGGSDGSVRVWSLEKMQPVHRLA 494
                 55788888554444434335888998899.999999999999999999999999999999999999988888888888899999999999999999933 PP

       PQQ_2 104 qrseepaelrssaspavagdtvvvgessgklvaldpkdGkvlWerel.a 151
                  +        s++s  +++ ++v g+s+g++ +  +k+G+++ e +  a
  KKY23810.1 495 AH------DNSVTSLQFDDSRIVSGGSDGRVKIWELKTGQLVRELSQpA 537
                 33......578999***************************88877644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 4020.55
//
Query:       KKY23811.1  [L=364]
Description: putative zip metal ion [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-33  115.8  14.3    1.5e-27   96.7  13.1    3.1  2  Zip       ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   7.2e-06      0.13      46      74 ..       2      31 ..       1      48 [. 0.86
   2 !   96.7  13.1   8.5e-32   1.5e-27      58     299 ..     102     309 ..      89     359 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.2e-06
         Zip 46 GvllgtaflhLlPealealeesqleee.ht 74
                Gvl+gt+++ ++Pe++e l++ q+ +  ht
  KKY23811.1  2 GVLVGTSLIVIIPEGVETLYSAQSTGVaHT 31
                9*********************99886555 PP

  == domain 2  score: 96.7 bits;  conditional E-value: 8.5e-32
         Zip  58 PealealeesqleeehthplagllvllGflllllveklltmivekksshkektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelr 156
                 P ++e+ ++++++++ +h ++g++++ Gf+l++l++kl ++i+ +        p +++ + + ++ ++  + ++v++++e +                 
  KKY23811.1 102 PTSTEKDSHHEEQHSSPHAWVGVALITGFILMFLIDKLPHHIHVS-------KPAQHRYHIALNELGRGFQRSSVDDEQEAF----------------- 176
                 677887788777666899**********************99777.......555555555566666666666666555542................. PP

         Zip 157 ngkqeksesekeqaseeedkeklaslkvraiilllglilHsfidGLAlG...vssssstgislfiAvllHelpeelglgaiLlkaglsrkkavllnllf 252
                                    + + +++++r++  + gl++H   dG+AlG    ++++   +++f+A+++H++p+++gl+++Llk gls++ a  + +lf
  KKY23811.1 177 -------------------GGQSQAQQTRSFATTTGLVIHAAADGIALGassSAENTGLSFIIFLAIMVHKAPAAFGLTSVLLKQGLSKRVARGHLVLF 256
                 ...................334457899*********************7555556666789************************************* PP

         Zip 253 altaplGiliGilvrs......isessgaeivsgillalsaGtflYvalvell 299
                 +l+ap+G+++++ +++        +++   + +g+ll +s+GtflYva+  + 
  KKY23811.1 257 SLAAPVGAILTWTLSAfigfggLANEQNRGWWTGMLLLFSGGTFLYVAMQTMQ 309
                 *************999*999998999**********************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2387.58
//
Query:       KKY23812.1  [L=500]
Description: putative histone acetyltransferase type b catalytic subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-50  169.6   0.0    1.3e-49  168.6   0.0    1.5  1  Hat1_N          Histone acetyl transferase HAT1 N-terminus
  ------ inclusion threshold ------
      0.051   13.8   0.0       0.15   12.3   0.0    1.8  2  Acetyltransf_1  Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> Hat1_N  Histone acetyl transferase HAT1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.6   0.0   1.4e-53   1.3e-49       1     160 []       5     162 ..       5     162 .. 0.96

  Alignments for each domain:
  == domain 1  score: 168.6 bits;  conditional E-value: 1.4e-53
                 GEEEHHHHEEEEEESSS.EEE.........E--S--HHHHTTTTEEESEES-EEEEEEETTT--EEEEEE-SEE--.STTS-..-HHHHHHTTS-T..E CS
      Hat1_N   1 wtvdanealkiklvrseedleeeektksesfhPeftyqiFgeeetIfGYkdLkInlyfaagslkpylkvsyseklkdkskte.kdvekklkeflpeeaf 98 
                 w+++an+a++i+lv+++++      t+ ++fhP+fty+iFgeee+IfGY++L+I l+f a++l+p l++sy++k+++ ++t+  d++k+lk+++p++af
  KKY23812.1   5 WSSNANDAVRISLVQPSAAGV----TELSTFHPKFTYPIFGEEERIFGYQNLEIYLRFVAHDLRPNLQISYDKKFQAVGETRaLDLNKTLKDWIPKSAF 99 
                 99**************76644....56679*************************************************99866*************** PP

                 S-HHHHHHHHH.HHH.H--GGSEEEEEETTEE..EEEEEEESSSHHHHHHHHHHTHHHHHHST CS
      Hat1_N  99 kskeeFekale.ekaksfkppGelihsytrekkefeiykasladpavrelhrrlqifvllFIE 160
                 +++ +F+ a++  + + f+ppG+l+hsy r++++fe++++ l+dpav+++++r+qif+ ++IE
  KKY23812.1 100 QKAGDFDTAITdGTGEVFTPPGRLVHSYLRKGRKFEVWAGPLSDPAVKAVLDRIQIFISFYIE 162
                 ***********98899************999999****************************9 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.6e-05      0.15      60     106 ..     244     289 ..     180     291 .. 0.84
   2 ?   -2.9   0.0      0.89   7.9e+03      34      70 ..     362     406 ..     345     412 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.6e-05
                     EEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEH CS
  Acetyltransf_1  60 vayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveednd 106
                     +  i ++ + p +++ G Gs+L++++ e+ ++  +++  +l+ve++n+
      KKY23812.1 244 RLRISQFLILPPHQHYGHGSELYNTIFEISLSDsNVH--ELTVEDPNE 289
                     56688999*************************4444..688899995 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.89
                     EEEE.EEETTEEEEEE..........EEEEEETTSTTEEEEEEEEESG CS
  Acetyltransf_1  34 gllv.aeedgeliGfi..........sllkipdekggvayieslaVsp 70 
                     +ll+ +    +++G +          +++ i+d   +++y ++l V+ 
      KKY23812.1 362 YLLSkIPSSSRVLGGAnlvklktqkhRISNIDD---RTYYWWRLLVKQ 406
                     555566666677777744444444444444555...677777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3399.94
//
Query:       KKY23813.1  [L=916]
Description: putative nuclear pore complex protein an-nup82 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00083   17.3   2.4       0.03   12.2   0.0    2.2  2  Nup88      Nuclear pore component
     0.0017   18.6   0.5     0.0017   18.6   0.5    2.4  2  ATG16      Autophagy protein 16 (ATG16)
     0.0056   15.9   0.7      0.037   13.2   0.1    2.1  2  RmuC       RmuC family
  ------ inclusion threshold ------
        0.1   12.9   0.3        0.4   11.0   0.2    2.1  2  kleA_kleC  Uncharacterized KorC regulated protein A
        0.2   12.0   0.4        3.4    8.1   0.0    2.5  2  BLOC1_2    Biogenesis of lysosome-related organelles complex-
       0.25   11.4   3.3          1    9.5   0.5    2.4  2  Mod_r      Modifier of rudimentary (Mod(r)) protein
       0.27   11.4   5.6      0.072   13.2   0.6    2.4  3  Nup54      Nucleoporin complex subunit 54


Domain annotation for each model (and alignments):
>> Nup88  Nuclear pore component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.2e-05      0.03      78     179 ..      72     174 ..      52     258 .. 0.80
   2 !    2.5   2.8    0.0098        25     553     664 ..     654     773 ..     636     793 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.2e-05
       Nup88  78 pplfevdrvlvsetgslvaLvGskGvvvlelPrRwGkksefeggkkkitCrtisvaerlF.tsneslelrqvrWyP...ssvsdshLvlLtsdNtlrlY 172
                 ++  e++++ +s++g+++aL+ s+ v +  lP R   +   e   +  + rt +v        +    +  + W+P   ss ++  Lv +t d ++rl+
  KKY23813.1  72 SIHQEIRQIIASPSGHFLALLTSHTVHIAILPDRSHLQ---EHDTSPLKLRTWQVGRTAHcLGDGRSPVVTALWHPlalSSNHQDCLVTITADAVVRLW 167
                 56779*****************************7544...444556777888887655415677889999*****5555566677************* PP

       Nup88 173 dlkepqn 179
                 + + +++
  KKY23813.1 168 EFERHST 174
                 7655444 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.0098
       Nup88 553 reeiekrvkllkkqkeqqleelqsleeerkslserae.....klAekyeeikdkQeklvrrvkkvlkrlns.klpvlseaeremkk..elekikeklks 643
                  +e+ +rv+ l+++ +   +++ +l +  + l+e+ e     ++ e+++ +  +Q++lv r  ++ +++ +   p   + + + k+   +e+i++  k+
  KKY23813.1 654 AAELFRRVERLRSEIRDAVDQMVTLADRLQGLQEDIEgnekgSIEERFSAVDARQNELVTRYLALKQKVAQvGHPRGRDKDLSTKEiaWVEEIHKIGKN 752
                 57899***********************99999998755544689*****************9998876541566666555443331146777777788 PP

       Nup88 644 lknalkqvkkkldkqrkqiak 664
                 ++ +++  k+  + q++++a 
  KKY23813.1 753 VGVQVEGSKESAESQEDETAT 773
                 888888888888888888774 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.5   6.5e-07    0.0017     104     197 ..     633     724 ..     592     725 .. 0.74
   2 ?    0.8   4.6       0.2     5e+02      18     103 ..     772     853 ..     761     865 .. 0.60

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 6.5e-07
       ATG16 104 llelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklrklekENkeLveRWmkrkaqeAe 197
                 l  + +++++  +++++ e++ ael +++++l+ +++d  +++  ++  +q lq++++    +  ++Ee+   + +  +eLv R+++ k++ A+
  KKY23813.1 633 LDMMANSHRTISSQTSALERSAAELFRRVERLRSEIRDAVDQMVTLADRLQGLQEDIEG--NEKGSIEERFSAVDARQNELVTRYLALKQKVAQ 724
                 33344455566667777777778888888888888888888888888888888877775..46789999999******************9885 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.2
       ATG16  18 aeliqaynrLldrtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqr 103
                 a l + y r+ + +++l ++ ++l++ + s++s  ++++++ +++a++++  ++++ +++ ++++ + + + l+e++ s ++++ r
  KKY23813.1 772 ATLGARYERIQNLSKSLLSQISSLPPPPPSSSS--RPQTPSLTSAANTNP--NATDPSLPLTKPNDTPTEKSLKESLLSSSQNQHR 853
                 555556666666666666666666554444443..333444444444444..5555666666667777777777777777777765 PP

>> RmuC  RmuC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   1.4e-05     0.037     203     269 ..     628     692 ..     602     713 .. 0.82
   2 ?    0.5   0.0      0.11   2.7e+02     229     280 ..     744     794 ..     735     797 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.4e-05
        RmuC 203 asPttLlalLrtvamlw.rqeaqeknaeeiaellgelydkfekfgedleklgkklekaqksydkavkk 269
                 +sP tL ++ ++ +++  ++ a+e+ a+e+++++++l ++++  ++++ +l ++l+ +q++++    +
  KKY23813.1 628 MSPATLDMMANSHRTISsQTSALERSAAELFRRVERLRSEIRDAVDQMVTLADRLQGLQEDIEG---N 692
                 79**********99876267899*************************************9987...3 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.11
        RmuC 229 eeiaellgelydkfekfgedleklgkklekaqksydkavkklegnilrkaek 280
                 eei + ++++  ++e+ +e+ e+ +++  ++   y++ +++l++++l+++ +
  KKY23813.1 744 EEIHKIGKNVGVQVEGSKESAESQEDETATLGARYER-IQNLSKSLLSQISS 794
                 6788888888888888888888888888888888888.88888887777665 PP

>> kleA_kleC  Uncharacterized KorC regulated protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00016       0.4      25      50 ..     646     671 ..     632     691 .. 0.81
   2 ?   -3.4   0.0       5.1   1.3e+04       4      18 ..     738     752 ..     736     756 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00016
   kleA_kleC  25 kiAaklaeAeeLvrqaeeLRakvyee 50 
                 +  a+ ++A+eL r++e+LR +++ +
  KKY23813.1 646 QTSALERSAAELFRRVERLRSEIRDA 671
                 5578899**************98764 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.1
   kleA_kleC   4 KimpWiDeLpevatd 18 
                 K ++W++e+ +++++
  KKY23813.1 738 KEIAWVEEIHKIGKN 752
                 6689***99988765 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0013       3.4       8      79 ..     619     687 ..     613     691 .. 0.91
   2 ?    1.1   0.1       0.2   5.1e+02      25      67 ..     746     788 ..     736     795 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0013
     BLOC1_2   8 skyleaeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLee 79 
                 +++l++e+ ++ + ++++ + +++ s++  +l+++aa+l + +e+l++   e++  ++q+  + ++++ L+e
  KKY23813.1 619 RALLKSEVRMSPATLDMMANSHRTISSQTSALERSAAELFRRVERLRS---EIRDAVDQMVTLADRLQGLQE 687
                 67899*****************************************99...999999999999999998876 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
     BLOC1_2  25 LeklNeaasekykklkdvaaslekkleklnekyeelqpylqqi 67 
                 ++k+ +++  +++  k++a+s e++   l ++ye +q++ +++
  KKY23813.1 746 IHKIGKNVGVQVEGSKESAESQEDETATLGARYERIQNLSKSL 788
                 5555666666677777777777777777777777777665543 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.5    0.0004         1       3      91 ..     628     715 ..     619     727 .. 0.79
   2 ?    2.0   0.1     0.081   2.1e+02      55      93 ..     756     794 ..     731     796 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0004
       Mod_r   3 lSkeeLqelledeeklealvktl.pevkqlkeekeellaeneslaeknlslepeleelrselqekleelkelekefeekeqeldellqkf 91 
                 +S   L  + +++  +++ ++ l  +  +l+ + e l+ e+++  ++   l ++l+ l+++++    e  ++e++f +  ++++el+ ++
  KKY23813.1 628 MSPATLDMMANSHRTISSQTSALeRSAAELFRRVERLRSEIRDAVDQMVTLADRLQGLQEDIEGN--EKGSIEERFSAVDARQNELVTRY 715
                 56677888899999999999999556999999999999999999999999999999999998875..55666667777777777666554 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.081
       Mod_r  55 eleelrselqekleelkelekefeekeqeldellqkfsp 93 
                 ++e  +++ +++ +e+++l +++e+ ++  ++ll++ s+
  KKY23813.1 756 QVEGSKESAESQEDETATLGARYERIQNLSKSLLSQISS 794
                 88999999************************9999885 PP

>> Nup54  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       4.9   1.3e+04      83      97 ..      63      77 ..      52      82 .. 0.69
   2 ?    1.8   0.5     0.091   2.3e+02      47      96 ..     635     683 ..     620     688 .. 0.59
   3 ?   13.2   0.6   2.8e-05     0.072      33     124 ..     656     754 ..     652     774 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.9
                HHHHHHHHHHHHHHH CS
       Nup54 83 elshRllrllrklei 97
                +  hR+l +  ++ei
  KKY23813.1 63 QEAHRILNVSIHQEI 77
                445777777777765 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.091
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Nup54  47 qhrerlkeisdrleeleqkhqletsvrlekakkrhvelshRllrllrkle 96 
                  + +   +is+++++le +  +e+  r+e+++++      +++ l+ +l+
  KKY23813.1 635 MMANSHRTISSQTSALE-RSAAELFRRVERLRSEIRDAVDQMVTLADRLQ 683
                 44444455666666666.66666666666666666666666666655555 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 2.8e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...TT-SS---SSHHHHHHHHHHHHHHHS CS
       Nup54  33 dLakRvkaQqkevaqhrerlkeisdrleele....qkhqletsvrlekakkrhvelshRllrllrkleil...rsrgyaldaeEeelrarletleaqln 124
                 +L +Rv+  + e++ +  ++ +++drl+ l+     +++ ++ +r   +  r+ el +R+l l +k+  +   r r + l+++E +  +++ ++ +++ 
  KKY23813.1 656 ELFRRVERLRSEIRDAVDQMVTLADRLQGLQedieGNEKGSIEERFSAVDARQNELVTRYLALKQKVAQVghpRGRDKDLSTKEIAWVEEIHKIGKNVG 754
                 566777777777777777777777777655544448999*****************************88899999**********9999999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (916 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       892  (0.0497518); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.51
# Mc/sec: 5374.13
//
Query:       KKY23814.1  [L=166]
Description: putative nuclear cap binding protein subunit 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-05   22.9   0.0    0.00012   21.8   0.0    1.5  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   6.9e-09   0.00012      22      69 ..      61     109 ..      58     110 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 6.9e-09
                 TSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  22 fGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +G+ik++ +  d  ++++ gf+fVe+ ++ dA ++l+   g+kl+ r +
  KKY23814.1  61 CGEIKRLVMGLDrFQKTPCGFCFVEYYTHQDALDCLKYIGGTKLDERII 109
                 7999999999999************************9999**999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.30s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1096.88
//
Query:       KKY23815.1  [L=299]
Description: putative 4phosphopantetheinyl transferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-09   37.2   0.0    7.9e-09   35.6   0.0    1.8  2  ACPS      4'-phosphopantetheinyl transferase superfamily


Domain annotation for each model (and alignments):
>> ACPS  4'-phosphopantetheinyl transferase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.18   3.2e+03      57      86 ..       6      35 ..       6      55 .. 0.65
   2 !   35.6   0.0   4.4e-13   7.9e-09       2      75 ..     119     221 ..     118     241 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.18
                HHHHHTTS-SSSS--GGG-EEEE-TTS-EE CS
        ACPS 57 AllKalgpglrklldfksievledstgrpt 86
                AllK ++      +++ +i+++++++   +
  KKY23815.1  6 ALLKFWFIHRTVRIPWSEIQISRTPDPHKR 35
                678888666655777777777666554444 PP

  == domain 2  score: 35.6 bits;  conditional E-value: 4.4e-13
                 EEEEEEEHHHHH.HHH----...........-HHHHHS-HHHHHHHTT--HHHH..................HHHHHHHHHHHHHHHHHTTS-SSS... CS
        ACPS   2 vGiDieklsrlrkrvkrrga...........kilkrifteeErkllkssdeear..................aelfarlWaaKEAllKalgpglrk... 68 
                 +G Di +  +++++     +           +i+ ++f++ E+++ k ++ +++                   + f++++a+KEA++K++g++l     
  KKY23815.1 119 LGLDITSPAESKRQP----TlnkpqdlydwvEIFSEVFHPLEIDHMKFAPISQHgqsststrnsdaeplfakLRRFYAFFALKEAYVKMTGEALLAkwl 213
                 89****777777554....2344599*********************97777777778888999999**************************944453 PP

                 .S--GGG- CS
        ACPS  69 .lldfksi 75 
                   ++fk++
  KKY23815.1 214 rDVEFKNV 221
                 33333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.22s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2001.47
//
Query:       KKY23816.1  [L=277]
Description: putative mitochondrial hypoxia responsive domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-06   28.0   0.5    3.9e-06   27.0   0.5    1.6  1  HIG_1_N     Hypoxia induced protein conserved region
  ------ inclusion threshold ------
        1.3    8.1   2.7        2.3    7.4   2.7    1.4  1  Zip         ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> HIG_1_N  Hypoxia induced protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.5   4.3e-10   3.9e-06       7      51 ..     120     164 ..     114     165 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 4.3e-10
     HIG_1_N   7 iGilatvgalvrglrsmkrgdsk..qsnrlmraRiaaQaftvlalva 51 
                 +G  + + ++  g++++  ++     +++l +aR++aQ++t+++lva
  KKY23816.1 120 VGGSWLLSMV--GAFALVGRNPYlsGQQKLVQARVYAQGLTLAVLVA 164
                 5666666666..677776554446689******************98 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   2.7   0.00026       2.3      85     172 ..     156     249 ..     137     276 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00026
         Zip  85 Gflllllveklltmivekksshkektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqas........e 172
                 G+ l  lv +++  i+e+  ++++  +k  +++ s+ +  ++ ++d ++++   e++   ++ +a +++e++++k+++++++k+q++        e
  KKY23816.1 156 GLTLAVLVASAAFEISEQ--RADQAAEKRGEHPNSHDDEDSRGQKDLWKDMVAAEEQRLAERDRAIKEQEEKDRKSGSHKKKKQQPQnpkayedeE 249
                 666666666666777666..7888888888888888888888888888888888998999999999999999999999999999988555554440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1382  (0.0770818); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 1925.91
//
Query:       KKY23817.1  [L=489]
Description: putative c-24 sterol reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.1e-113  379.4  15.7   2.5e-113  379.1  15.7    1.1  1  ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
  ------ inclusion threshold ------
       0.67   10.5   4.1        3.3    8.3   0.0    2.8  3  DUF1240     Protein of unknown function (DUF1240)


Domain annotation for each model (and alignments):
>> ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  379.1  15.7  2.8e-117  2.5e-113       4     378 ..     106     487 ..     103     489 .] 0.97

  Alignments for each domain:
  == domain 1  score: 379.1 bits;  conditional E-value: 2.8e-117
  ERG4_ERG24   4 eyefggeigalgikiglpvlelylnaiskfealklllpksldlaelkneikeldllvfegaiwerklftvfllfyvlqavlylllpGkvveGleLs..n 100
                 +yefgg+ g+ +++ig+p+l++y++  +  ++ k+ lpk+   +++  ++k++++ v++ga++++k+++++++fyv++  +ylllpG+  +G +L   +
  KKY23817.1 106 HYEFGGSWGVSAMMIGFPLLMYYMWIGATYYDGKIPLPKAE--QTFVDFLKDMSHIVYKGAFPTAKAWAMYWTFYVVEGAFYLLLPGVYRKGKPLPheD 202
                 89**************************************9..89**************************************************8889 PP

  ERG4_ERG24 101 gkkLkYkinalaslllvlaillvlqvtelfeltvlidnfvqlisvailfafalaivlYvrslkvkerkkdkqlaaggvsGnliYDffiGreLnPRl.gs 198
                 gk+L Y + a++s+++  ai++ l+++ lf+l+++id+f++l+sv+il++++++++ Y  +l+  +        +++++G+ +YDff+G+eLnPRl g 
  KKY23817.1 203 GKQLTYYCSAMWSFYTSCAIITGLHFSGLFKLQTIIDEFGSLMSVSILTGYIMSFYFYFSALIRGK--------QHRMTGYPVYDFFMGAELNPRLfGL 293
                 *************************************************************99887........7********************846* PP

  ERG4_ERG24 199 lDlkmFlelRlgllllllinlaallkqyklygkvtdslllvllaqllYvfdgvkneeavlttmDittdgFGFmLaFgdlvlvPftYslqtlYLsvh.Ps 296
                 lD+kmF+e+R+++ +l+l++l+a+++qy +yg+v+ ++ l+++a++lY+++++k+ee ++t +D+ +++ GFmL+F++l++vP  Y++ ++YL  h P+
  KKY23817.1 294 LDFKMFFEVRIPWYILFLVTLGAAARQYDTYGYVSAEVGLLIFAHWLYANACSKGEECIITSWDMYYEKLGFMLTFWNLSGVPLSYCHAAIYLALHdPK 392
                 *************************************************************************************************** PP

  ERG4_ERG24 297 elgwst.vlvailvvlligyyiFrsansqknnFR...........tnPedpklkl..lkyiqtktGskLlvsGWyglarkinYlgDwlqslswsLa 378
                 +++w    ++a  v  ++ y ++++ansqkn FR           t+P++p++ +  +++i++  G+ +l +GW+g+ark++Y+ D++ ++sw+L 
  KKY23817.1 393 TYHWNRtFMAAWFVTYALVYWVWDTANSQKNRFRsretgddftrkTFPQLPWQVVenPRIIKSPAGT-ILADGWFGKARKPHYTCDLFFAISWALY 487
                 ****986889999999***********************************9876659999999986.789***********************95 PP

>> DUF1240  Protein of unknown function (DUF1240)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00036       3.3       6      46 ..     112     153 ..     108     168 .. 0.76
   2 ?    2.0   0.9     0.035   3.1e+02      20      65 ..     216     260 ..     205     270 .. 0.60
   3 ?   -2.6   0.0      0.91   8.2e+03      20      43 ..     378     401 ..     359     425 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00036
     DUF1240   6 sskvvlllfssPlllYfsvl.vvlvaitnklakvndklvkll 46 
                 s+ v+ +++ +Pll+Y++ + ++++  +  l+k ++++v++l
  KKY23817.1 112 SWGVSAMMIGFPLLMYYMWIgATYYDGKIPLPKAEQTFVDFL 153
                 899***********9998651555555666677777777766 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.035
     DUF1240  20 lYfsvlvvlvaitnklakvndklvkllaiiailsfvlslflslYvd 65 
                 +Y+s+++++   +  l k++ ++++ +  ++ +s++  + +s+Y  
  KKY23817.1 216 FYTSCAIITGLHFSGLFKLQ-TIIDEFGSLMSVSILTGYIMSFYFY 260
                 55555555555555444443.4445555566666666666666654 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.91
     DUF1240  20 lYfsvlvvlvaitnklakvndklv 43 
                 +Y+ +++ l     k+ + n +++
  KKY23817.1 378 SYCHAAIYLALHDPKTYHWNRTFM 401
                 455555444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.49
# Mc/sec: 2994.58
//
Query:       KKY23818.1  [L=662]
Description: putative ring finger domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-07   29.4   6.9    9.9e-07   28.5   6.9    1.5  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    1.2e-06   28.4   3.4    1.2e-06   28.4   3.4    2.2  2  zf-RING_UBOX  RING-type zinc-finger
    5.1e-06   26.5   4.7    2.8e-05   24.2   4.9    2.0  2  zf-C3HC4_4    zinc finger of C3HC4-type, RING
    5.2e-06   26.2   6.3    1.2e-05   25.0   6.3    1.6  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    1.1e-05   25.3   4.5    2.1e-05   24.4   4.5    1.5  1  zf-RING_5     zinc-RING finger domain
    1.3e-05   25.4   7.6    2.9e-05   24.3   7.6    1.6  1  zf-RING_2     Ring finger domain
    2.3e-05   24.2   7.5    5.8e-05   22.8   3.0    2.3  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.016   15.1   9.7       0.19   11.6   9.9    2.5  2  Prok-RING_4   Prokaryotic RING finger family 4
       0.24   11.5   0.6       0.54   10.4   0.1    1.7  2  TerY_C        TerY-C metal binding domain
        1.1    8.8   3.1        5.3    6.6   0.5    2.4  2  zf-ribbon_3   zinc-ribbon domain
        1.1    9.0   8.0        6.9    6.5   7.4    2.3  2  zf-MIZ        MIZ/SP-RING zinc finger
        2.1    8.7   5.7        6.4    7.1   5.7    1.9  1  zf-rbx1       RING-H2 zinc finger domain
        3.9    7.7   6.1         13    6.0   6.1    1.8  1  zf-RING_10    zinc RING finger of MSL2


Domain annotation for each model (and alignments):
>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   6.9   7.2e-10   9.9e-07       1      41 []     103     153 ..     103     153 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 7.2e-10
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC...........TSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilks...........rkkvkCPlC 41 
                 CpiCl++++ p  + +C+H fC +C+ + + s            + +kCP+C
  KKY23818.1 103 CPICLSTPVAPR-MAKCGHIFCLPCLIRFMHSsddtdmvsekrARWKKCPIC 153
                 ************.******************99******887655566***9 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   3.4   8.7e-10   1.2e-06       1      27 [.     103     139 ..     103     151 .. 0.67
   2 ?    0.9   0.2      0.34   4.6e+02       1       7 [.     150     156 ..     150     165 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 8.7e-10
  zf-RING_UBOX   1 CpIClelftdP.lvlpCGHtFCreCl......w....e 27 
                   CpICl++   P +  +CGH+FC +Cl            
    KKY23818.1 103 CPICLSTPVAPrMA-KCGHIFCLPCLirfmhsSddtdM 139
                   *****999999443.8**********766543133343 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.34
  zf-RING_UBOX   1 CpIClel 7  
                   CpIC ++
    KKY23818.1 150 CPICEDS 156
                   ****875 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   4.9     2e-08   2.8e-05       1      42 []     103     153 ..     103     153 .. 0.83
   2 ?   -0.1   0.2      0.81   1.1e+03       1       6 [.     150     155 ..     150     159 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2e-08
  zf-C3HC4_4   1 CPiCldYLekPvsleCGhsfClsCisslqkepdgeq.........llCplC 42 
                 CPiCl+    P   +CGh+fCl C+ ++++++d+++           Cp C
  KKY23818.1 103 CPICLSTPVAPRMAKCGHIFCLPCLIRFMHSSDDTDmvsekrarwKKCPIC 153
                 ********************************9987555555555555555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.81
  zf-C3HC4_4   1 CPiCld 6  
                 CPiC d
  KKY23818.1 150 CPICED 155
                 ****87 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   6.3     9e-09   1.2e-05       4      47 ..     102     157 ..      99     158 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 9e-09
                 B-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH.............TT-B-TTT--B- CS
  zf-C3HC4_3   4 eCviClerprnvvllpCgHlvlCeeCaekllk.............rkkkCpiCrrpi 47 
                  C+iCl++p    + +CgH+ +C  C+ +++              r kkCpiC  +i
  KKY23818.1 102 SCPICLSTPVAPRMAKCGHI-FCLPCLIRFMHssddtdmvsekraRWKKCPICEDSI 157
                 6*******************.*********9899********99999******9876 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   4.5   1.5e-08   2.1e-05       2      43 ..     103     154 ..      98     155 .. 0.96

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.5e-08
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll.............ekeavCpiCr 43 
                 C++C +      ++ + +CgHifC  Cl + +             ++ ++CpiC+
  KKY23818.1 103 CPICLSTP---VAPRMAKCGHIFCLPCLIRFMhssddtdmvsekrARWKKCPICE 154
                 99999999...99******************************99999******7 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   7.6   2.1e-08   2.9e-05       2      43 ..     102     153 ..     101     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.1e-08
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssst.............CPlC 43 
                 +CpICl   s++  ++  +CgH+f+  Cl r+++ss               CP+C
  KKY23818.1 102 SCPICL---STPVAPRMAKCGHIFCLPCLIRFMHSSDDtdmvsekrarwkkCPIC 153
                 7****9...5545555557**********998777766888999999******** PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   3.0   4.2e-08   5.8e-05       2      34 ..     103     134 ..     102     137 .. 0.92
   2 ?    3.2   0.1     0.059        82       1      10 [.     149     158 ..     148     162 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 4.2e-08
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLeek 34 
                 CpiCl     p ++++CgH fC  C+ r ++++
  KKY23818.1 103 CPICLSTPVAP-RMAKCGHIFCLPCLIRFMHSS 134
                 *********99.****************98876 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.059
  zf-C3HC4_2   1 kCpiCldmlk 10 
                 kCpiC d+++
  KKY23818.1 149 KCPICEDSIY 158
                 6999999886 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.3     0.024        33      27      37 ..      97     107 ..      95     111 .. 0.81
   2 ?   11.6   9.9   0.00014      0.19       1      40 [.     103     157 ..     103     162 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.024
  Prok-RING_4  27 skdlssCPlCq 37 
                  +++l+sCP+C 
   KKY23818.1  97 QTQLASCPICL 107
                  56888*****6 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00014
  Prok-RING_4   1 CvlCgeqekkailepCgHlvCkeCfdskdls...............sCPlCqrri 40 
                  C +C + +  ++++ CgH++C  C+    +s                CP+C+  i
   KKY23818.1 103 CPICLSTPVAPRMAKCGHIFCLPCLIRFMHSsddtdmvsekrarwkKCPICEDSI 157
                  99**********************97775555667788899999999****9876 PP

>> TerY_C  TerY-C metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00039      0.54      64      97 ..      90     124 ..      54     128 .. 0.79
   2 ?   -2.7   0.0       4.3   5.9e+03     103     112 ..     148     157 ..     136     162 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00039
      TerY_C  64 lkvntseLeGapgCPhCgn.alafavCeCgkllCi 97 
                 l+v +s  +  ++CP C +  +a  + +Cg+++C+
  KKY23818.1  90 LQVLASAQTQLASCPICLStPVAPRMAKCGHIFCL 124
                 5666677777899****86258999*********7 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.3
      TerY_C 103 atCpwCgkev 112
                 + Cp C+ ++
  KKY23818.1 148 KKCPICEDSI 157
                 4566666554 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.5    0.0039       5.3       3      21 ..     101     120 ..      99     120 .. 0.91
   2 ?    2.1   0.1       0.1   1.4e+02      14      22 ..     145     153 ..     142     155 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0039
  zf-ribbon_3   3 vrCPnCGa.plssddnvCpy 21 
                   +CP C + p+++++ +C +
   KKY23818.1 101 ASCPICLStPVAPRMAKCGH 120
                  68****************87 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.1
  zf-ribbon_3  14 sddnvCpyC 22 
                  +++++Cp C
   KKY23818.1 145 ARWKKCPIC 153
                  578888888 PP

>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2      0.11   1.5e+02      30      48 ..      87     107 ..      83     109 .. 0.63
   2 ?    6.5   7.4     0.005       6.9       5      48 ..     103     154 ..     101     156 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.11
                 HHHHHH..HHHS---B-TTT- CS
      zf-MIZ  30 esylel..nertetWnCPvCs 48 
                 +++l++  +++t+  +CP+C 
  KKY23818.1  87 NNVLQVlaSAQTQLASCPICL 107
                 5555551145666699****6 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.005
                 -TTTSSB-SSEEEETT--SS--EEHH.HHHHHHHHS--.......-.B-TTT- CS
      zf-MIZ   5 CplslsrikiPvrgekCkHlqCfdle.sylelnertet.......W.nCPvCs 48 
                 Cp+ ls   ++ r  kC H+ C+ +   ++++++ t         W +CP+C+
  KKY23818.1 103 CPICLST-PVAPRMAKCGHIFCLPCLiRFMHSSDDTDMvsekrarWkKCPICE 154
                 8877665.455699*********9762688887777667778888955****8 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.7    0.0047       6.4      14      54 ..     103     153 ..      93     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0047
     zf-rbx1  14 cieckapgdeecpvvlGeCgHaFHlhCiskWlkt.............rkvCPlc 54 
                 c+ c ++  +   + + +CgH F l C+ + +++              k+CP+c
  KKY23818.1 103 CPICLSTPVA---PRMAKCGHIFCLPCLIRFMHSsddtdmvsekrarWKKCPIC 153
                 5555555544...77889***************999999999998877889999 PP

>> zf-RING_10  zinc RING finger of MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   6.1    0.0094        13       3      31 ..     103     128 ..     100     169 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0094
  zf-RING_10   3 CvvCckLLvdPlepkekeCqHyvCrlCvg 31 
                 C      L  P++p++ +C+H  C  C+ 
  KKY23818.1 103 CP---ICLSTPVAPRMAKCGHIFCLPCLI 128
                 44...4599******************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1272  (0.0709465); expected 358.6 (0.02)
Passed bias filter:                      739  (0.0412181); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.49
# Mc/sec: 4080.41
//
Query:       KKY23819.1  [L=682]
Description: putative ubiquitin c-terminal hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-44  153.0   0.0    1.7e-44  152.3   0.0    1.3  1  UCH       Ubiquitin carboxyl-terminal hydrolase
    1.2e-10   41.6   0.0    1.7e-09   37.7   0.0    2.3  1  UCH_1     Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.3   0.0   1.9e-48   1.7e-44       2     247 ..     210     568 ..     209     590 .. 0.87

  Alignments for each domain:
  == domain 1  score: 152.3 bits;  conditional E-value: 1.9e-48
                 EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-...TT.TTS.TT.HHHHHHHHHHHHHH........SH-CCEE--HHHHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx.xxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxx RF
         UCH   2 GlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkel..nesnplgkkg.elakalkdlfkell........kskskavsPkklkktlskla 89 
                 Gl+N+Gn Cymns+lQ+L+ + ++ ++l +l++ + +s ++++   + +  l +k+ +++++ +   ++l         ++   a+ P+++++++++l 
  KKY23819.1 210 GLVNTGNMCYMNSILQILTFCVPFYEFLDRLSRDAVHSLKSDTPliD-AMILFMKEyRVIDSAT-SAEKLRlrlrqeevEQYGDAFIPENVYEVIRTLP 306
                 9*****************************98888887766555543.3334444434443322.2234435555777777888************998 PP

                 GG..GTSSSTCEHHHHHHHHHHHHHHHHCC...................................HCCCHHH.HHHCCCTTSHHHHHH-EEEEE..... CS
                 xx..xxxxxxxxxxxxxxxxxxxxxxxxxx...................................xxxxxxx.xxxxxxxxxxxxxxxxxxxxx..... RF
         UCH  90 ks..fsgykqqDaqEflaflLdqlhedlnr...................................evaeekw.kkhlkrndslitdlfegqlks..... 145
                 +   ++ ++qqDaqEfl flL++lhe++                                     +++++++  +     +s+it++f+g+l+s     
  KKY23819.1 307 RFrdMRRGHQQDAQEFLGFLLEELHEECAFslkkamtaaseqtnstasedgasrqdedgwmevgvKQKASTTrASGVIGAESPITKIFGGKLRSelrip 405
                 766688*********************998999*****************************9873344444588888999****************** PP

                 ......................................................EEEEEEB-SEEEEEEESEEETEE...EEE--SEEB--SEEE-G.. CS
                 ......................................................xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx.. RF
         UCH 146 ......................................................klklkrlPeiLiihlkRfsynss...ksKlntkvefpeeldls.. 185
                                                                       ++ +++lP++Li+hlkRf+y+++    +K+ +k+ +p++l++   
  KKY23819.1 406 gvrqsntvepfeslqldigspqinniidalkglskpeaipgefnsprgkvnatkQVYIEQLPPVLILHLKRFQYDNAtkrTEKIWKKIGYPLNLEIPre 504
                 **************************************************************************8888999**********99999866 PP

                 ..GGBSS-BTTS-TCS-BEEEEEEEEEES.CTTSEEEEEEEECTTTTEEEEEETTEEEEE-HHCC CS
                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH 186 ..sylaeekkkkteekkkYeLiavvvHsG.slssGHYvayiknekngkWykydDetvkevkeeee 247
                   +++ ++k  ++   ++Y+L++v++H+G ++s+GHY++ +++++  +W+++dD+ + +v++e +
  KKY23819.1 505 afPVQVRNKMLHHGGIPQYRLTGVIYHHGrNASGGHYTVDVRRQDGIEWIRLDDTVIRRVRAE-D 568
                 665566666666777788************************999999************977.3 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   1.9e-13   1.7e-09       2     318 ..     210     559 ..     209     561 .. 0.73

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.9e-13
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxx RF
       UCH_1   2 GLEnhivnsYlNslLQvlyfipplrnlalshlak..eckkehcLlcElgflfdmldkakglncqasnFlrals..........sipeasalglileeee 88 
                 GL n+ + +Y+Ns+LQ+l f+ p+++++ +   +  +  k +  l ++  lf  + +   +   a+ +   l+           ip  +  ++i     
  KKY23819.1 210 GLVNTGNMCYMNSILQILTFCVPFYEFLDRLSRDavHSLKSDTPLIDAMILFMKEYRVIDSATSAEKLRLRLRqeeveqygdaFIP-ENVYEVI----- 302
                 999**********************8875555443489999999999999998888888888888888888883333333333111.2222222..... PP

                 xxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........................................xxxxxxxxxxxxxxxx RF
       UCH_1  89 ete.....kssaislssliqsfnrflldqlekelketkkns..........................................seeesaieqllgtkae 140
                   +     ++ ++  ++  q+f  fll++l++e   + k+                                             +es+i++++g k+ 
  KKY23819.1 303 --RtlprfRDMRRGHQQDAQEFLGFLLEELHEECAFSLKKAmtaaseqtnstasedgasrqdedgwmevgvkqkasttrasgvIGAESPITKIFGGKLR 399
                 ..012211233333444457899999999999987777666899999999999999999999999999999999999999999999************* PP

                 xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx....xxxxx RF
       UCH_1 141 ttirclkCgsek.srksstlvldlkyPkpsnekkeakvtfasilksslerekttrawCekCkryqpteqrktvknlPpvLalnakle.ee....eelel 233
                 +++r    ++ + +++  +l ld+  P        +  ++ + lk   +  + +++  ++ + + + +++  +++lPpvL+l++k++  +    ++ ++
  KKY23819.1 400 SELRIPGVRQSNtVEPFESLQLDIGSP--------QINNIIDALKGLSKP-EAIPGEFNSPRGKVNATKQVYIEQLPPVLILHLKRFqYDnatkRTEKI 489
                 ******665555566677777777443........334677777765555.8888888999999999999***************99555565446788 PP

                 xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
       UCH_1 234 wktk.nwlpleiklsldedknleeklkeerekakaekeikvYeLqsvvvhigdskesghLvslvkvaekelerdppes.qWylFNDf 318
                 wk+    l+lei  +        +   + r+k  ++ +i  Y L++v++h g + + gh+   v+   +       ++ +W+ ++D 
  KKY23819.1 490 WKKIgYPLNLEIPRE--------AFPVQVRNKMLHHGGIPQYRLTGVIYHHGRNASGGHYTVDVRR--Q-------DGiEWIRLDDT 559
                 888534444444443........334445555667889**************9988****766662..1.......22477777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.52
# Mc/sec: 3983.24
//
Query:       KKY23820.1  [L=1210]
Description: putative rna-dependent rna polymerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.8e-186  619.0   0.0   1.2e-185  618.6   0.0    1.1  1  RdRP      RNA dependent RNA polymerase


Domain annotation for each model (and alignments):
>> RdRP  RNA dependent RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  618.6   0.0  6.4e-190  1.2e-185       1     586 []     420    1019 ..     420    1019 .. 0.91

  Alignments for each domain:
  == domain 1  score: 618.6 bits;  conditional E-value: 6.4e-190
        RdRP    1 vtptriilegpeleksnrvlRrfkegsdrFlrvkfpdedge..rldsedgeellkervkkvlkegiviagrkfeflafsdsqlrehsvwffapf.ee 94  
                  vtptri+l+gpele+ nr+lR+f++++++F rv+f+dedg+  +++++ + + +++r+k++lk+gi+iagr++ fl+fs+s+lr+hs+wf apf ++
  KKY23820.1  420 VTPTRITLHGPELESNNRILRKFPNHHEYFARVQFCDEDGQdlHFNPRISYDQIYSRFKRILKNGIQIAGRTYTFLGFSHSSLRSHSIWFSAPFiDD 516 
                  79***************************************88888886677888***************************************733 PP

        RdRP   95 eger.isaeeirkwlgdfenisqsvaKyaaRlglalSttrptvvkvereqiiieeidDvkneekdiylftDGvGliSrelarkiakklglkkaeelP 190 
                  + ++  s  +i++ lg+f+ i +s+a++aaR+g+a+S+t  +v    r++i ++++ Dv+ + +  ++f+DGvG+iS ++++ +++++  +  + +P
  KKY23820.1  517 N-KDpQSYWTIIEALGKFSGI-RSPARCAARVGQAFSETPFSVSL-VRNKISVSKVADVT-SPDGSRVFSDGVGTISWDAMQAVWRNIPSH--KGMP 607 
                  3.3448************988.*******************9555.567788999***94.456678*********************997..789* PP

        RdRP  191 safQiRigGaKGvlavdkrlkp.ekielrpSqiKfkseeddsekrtleivkvsskpkpayLnrqlikiLedlgvpeevflellkealeelrealkda 286 
                  ++fQiR+gGaKG+la+++ l p + i+lrpS++Kf+s+    + ++lei+++ +kp p+ Lnrq+ikiLed+gvp+++f +l++ al+ lr ++++a
  KKY23820.1  608 TCFQIRYGGAKGMLAINSLL-PgSLIQLRPSMVKFDSQ----DIQNLEICDMGTKPIPLVLNRQMIKILEDMGVPQRWFSKLQNLALQHLRGITANA 699 
                  *****************888.6578**********666....4579*************************************************** PP

        RdRP  287 gaaaell.kka..gdpskleellaelldsgfdpseldpflrsllkalvkeslrklkekarIpvpksatllgvaDetgvLkegevfvqlsealdqede 380 
                   ++a+++ + +  g+++kl++l++++  +g++ +++ pflrs+++a+v ++lr lk+karIpv+k++tl+g++Detg+L+e++v+v ++    + ++
  KKY23820.1  700 YNTAKFMkA-QdiGSSIKLHKLFSRCAMLGIEFKKE-PFLRSVVEAAVFRELRLLKHKARIPVKKGITLFGIMDETGYLEEDQVYVTFDAM--KGTF 792 
                  *******64.44799****************99976.************************************************999664..2233 PP

        RdRP  381 ksktkllkgdvlVtRnPalhpgDiqvvkavdvp...elrhlkdviVFstkGdrslaselsGGDlDGDkywViwdpelefapakpsneepadyeea.k 473 
                          +++lVtR+Pal+ gDiqvv+ v +p   +l + k++iVFs+kG+r+l+s+lsGGDlDGD+y++iwd e +  p  +++e pady+ + k
  KKY23820.1  793 P--PPPGPEQLLVTRSPALYDGDIQVVNNVVPPidhPLIEHKNCIVFSQKGSRDLPSQLSGGDLDGDIYNIIWDAEAK--PI-QTFE-PADYP-RvK 882 
                  2..33334579*******************4468889999*************************************8..55.6765.*****.99* PP

        RdRP  474 pkeldrevtvediadffveymksdvlGlisnahlaiadq.eegiddpkclkLaelhskaVDypKtGipvdkkeiprelkkpkekPdf.......... 559 
                  p +++r+v+++d+adffv++mk+d+lG+i+++h+++adq +eg+++++c kLa+lhs+aVD++KtGi+v+++++p ++   + +Pdf          
  KKY23820.1  883 PIDIGRPVNKDDMADFFVDFMKTDHLGVIATRHMILADQrPEGTRHSDCRKLAQLHSTAVDFSKTGIAVNMRDLPWAN---NFRPDFlapgpqahih 976 
                  **********************************************************************87777766...469************9 PP

        RdRP  560 .................kekekkekakkpyykskkilgkLyrev 586 
                                   + +e+++ ++++yyks+kilgkLyr++
  KKY23820.1  977 drseieieglihqitnnD-DEDDSGPTRKYYKSEKILGKLYRAI 1019
                  999999999999888642.333455689**************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.50
# Mc/sec: 7315.72
//
Query:       KKY23821.1  [L=248]
Description: putative dienelactone hydrolase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-22   77.8   0.0      1e-21   77.5   0.0    1.1  1  DLH            Dienelactone hydrolase family
     0.0033   17.0   0.0     0.0044   16.6   0.0    1.1  1  LIDHydrolase   Lipid-droplet associated hydrolase
  ------ inclusion threshold ------
      0.087   12.4   0.0       0.13   11.8   0.0    1.2  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.0   1.7e-25     1e-21      31     214 ..      27     228 ..      18     231 .. 0.89

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 1.7e-25
         DLH  31 diserlaeeGYvalaPdlYarqa.ldpndea.eaaraldelvskvaeekvlddlkaavaylksvpevstkkvgvvGfCmGGalalllaaevpevdaava 127
                 +  ++la  GY++ aP  Y      dp +++   ++a ++ ++++  ++  +d+k av++l s+p ++t+k+g +G+C+GG la+  a    +v a v 
  KKY23821.1  27 RFGRQLAGHGYLVAAPSSYHEFTsHDPLTYDvPGTDAGNKWKAEKFLAAYDEDAKLAVDALLSMP-TCTGKIGTTGMCLGGHLAYRCAMDP-RVSAGVC 123
                 56799**************98775566655515667777766666688899999***********.**********************998.8****** PP

         DLH 128 fYG................lspekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsre..syneeaaedawer 208
                 ++                  + + e +++++i + ++++fg++D+++  + ++ ++++l +++ ++ +   +ga+HaF +d+ +   y+++ +   w+ 
  KKY23821.1 124 YFAtdihsstlgttttevsAKTSLERTATKEIRGELVMIFGKRDNHVSPEGRDLIRKTLHESGTEFSFYEVAGAQHAFIRDELSkgRYDPAITGVCWAM 222
                 ****************98777888888999***************************************************987779**9999999999 PP

         DLH 209 vlelfk 214
                 + elf 
  KKY23821.1 223 LEELFV 228
                 999885 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   7.3e-07    0.0044     212     266 .]     146     202 ..     126     202 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 7.3e-07
  LIDHydrolase 212 eeedvllkknkekalvfyfgkkDhWvpeetrdelkellge..eklevde.kgipHaFv 266
                   + e +  k+   + lv++fgk D+ v+ e rd ++++l+e  +++++ e  g++HaF+
    KKY23821.1 146 SLERTATKEIRGE-LVMIFGKRDNHVSPEGRDLIRKTLHEsgTEFSFYEvAGAQHAFI 202
                   3333333444444.**************************8888888888*******6 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.2e-05      0.13      84     121 ..      78     115 ..      66     133 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.2e-05
                    HHHHHHHHHHHHCTTEEEEEEEEEECHHHHHHHHHCTT CS
  Peptidase_S15  84 edgadvidWlakqpwsnGkVgmtGiSYlGttqllaaat 121
                    ed++ ++d l   p ++Gk+g+tG+  +G +++  a++
     KKY23821.1  78 EDAKLAVDALLSMPTCTGKIGTTGMCLGGHLAYRCAMD 115
                    5777778888889*******************999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1742.53
//
Query:       KKY23822.1  [L=428]
Description: putative phosphotransferase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-15   55.8   0.0    2.4e-14   53.8   0.0    2.0  2  APH       Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.011   14.7   0.0      0.019   13.9   0.0    1.3  1  DUF1679   Protein of unknown function (DUF1679)
      0.028   13.7   0.0      0.094   12.0   0.0    1.8  2  EcKinase  Ecdysteroid kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.81   4.8e+03     127     151 ..      84     107 ..      48     133 .. 0.61
   2 !   53.8   0.0     4e-18   2.4e-14      40     206 ..     204     383 ..     197     401 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.81
                 HHHHCHHHCCCGCCTCC.HHHHHHHH CS
         APH 127 rqlesatarllaselld.lleeleeq 151
                  ++ ++  ++++ +l++  le++ +q
  KKY23822.1  84 FYRKEW--DRRKKDLDPsTLEKMSKQ 107
                 333334..333333333345555555 PP

  == domain 2  score: 53.8 bits;  conditional E-value: 4e-18
                 HHHHHHHHHHTT-..B--B-CTTBS-EEETTEEEEEEE----EE-SS....HHHHHHHHHHHHHHHHHHCCHHCH..-STTTB-...........SHHC CS
         APH  40 evallrlLakagv..pvPevlagdtddeeigllfalieyvpgrsllr....klsaaqlpellealgeflaalhqvd.paalpla...........dfla 120
                 e+ +l++La++ +  p+P+++ + t +  + + +  i+++p + +++    + +    +++l+++ + l++l q d  +  ++a           ++++
  KKY23822.1 204 EYTSLQYLAQHAPnfPAPKPHGLVTLGRYNVTFMSYISSMPLAKAWPsmtcH-QKVSVQRQLDDIFRRLRQLKQPDgFPLGGVAmegvkdlhrggYRSD 301
                 66789******99**********************************66532.3334567777777777777777666666666444433333333333 PP

                 HTCCHHHHHHCHHHCCCGCCTCC..HHHHHHHHHHHHHHHH--S.SS-EEEE-SS-SGGGEEEC.....TTEEEEE---TT-EEEECCHHHH CS
         APH 121 qdlellrqlesatarllaselld..lleeleeqvlaalaallpg.elptvllHgDlhpgNllvd...pddgrvtGviDfedaglgpplyDla 206
                 q ++  + +e++         +        ++  +  l   lp+ + + v++HgDl+p+N++vd   ++d  vtG+iD+ed g  p+ ++  
  KKY23822.1 302 QVITTGAGFENW---------KFslSMFSTDH-YIKDLHGFLPPpATESVFTHGDLRPDNIMVDlssSGDYSVTGIIDWEDGGFYPYYHECT 383
                 333333444444.........22222223444.55555555555899********************9*************99999888765 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.1e-06     0.019     267     299 ..     339     371 ..     303     375 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.1e-06
     DUF1679 267 kkvlvhgDlwsaNiLfseeeegklklkkviDyQ 299
                 + v++hgDl   Ni+   +++g  +++ +iD+ 
  KKY23822.1 339 ESVFTHGDLRPDNIMVDLSSSGDYSVTGIIDWE 371
                 579*****************************5 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.82   4.9e+03     173     215 ..     163     206 ..     149     209 .. 0.56
   2 ?   12.0   0.0   1.6e-05     0.094     197     245 ..     323     370 ..     311     373 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.82
    EcKinase 173 aalealreelpelekea...ekleklkenlferllelveekeeefn 215
                 ++ +++r++ + +e       ++ k+ ++++++++++  ++++e++
  KKY23822.1 163 KLKQTFRNSTKIYE--SpfrGAVFKCSDEIIAKVVRMSCPDTTEYT 206
                 33333333333332..133566667777777777777777776665 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 1.6e-05
    EcKinase 197 enlferllelveekeeefnvlnHGDlwvnNimfkydeegepedvilvDF 245
                 ++++++l  ++ +++   +v++HGDl   Nim+   ++g+ + + ++D+
  KKY23822.1 323 DHYIKDLHGFL-PPPATESVFTHGDLRPDNIMVDLSSSGDYSVTGIIDW 370
                 55666666666.7778889**********************99999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      652  (0.0363657); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3400.41
//
Query:       KKY23823.1  [L=573]
Description: putative mfs alpha-glucoside [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-82  275.4  21.0    9.6e-82  275.2  21.0    1.0  1  Sugar_tr    Sugar (and other) transporter
    6.8e-17   61.4  38.3    3.3e-10   39.4   5.5    2.2  3  MFS_1       Major Facilitator Superfamily
    0.00018   20.5   2.8    0.00018   20.5   2.8    2.3  2  MFS_1_like  MFS_1 like family


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.2  21.0   1.6e-85   9.6e-82       3     452 .]      67     521 ..      65     521 .. 0.91

  Alignments for each domain:
  == domain 1  score: 275.2 bits;  conditional E-value: 1.6e-85
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkns 101
                 ++++++  ++gYd+ +++ f+++++f k++g + +++s++  ++++  + + ++vG+iiG ++ g++++rfG++++ +++ +l ++ +++ ++ak    
  KKY23823.1  67 VLISTCIAMEGYDICLLSNFYAFPQFNKKYGEQLADGSYQVPASWQAGLSNGANVGEIIGLFINGWVSERFGYRYTVMTCLTLIIAFTAIFFTAK---D 162
                 56777789*****************************99999*****************************************************...9 PP

                 -TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHH CS
    Sugar_tr 102 vevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl.nktsnadgwrillglqlvpallllilllflPESPrylv 199
                 v +l v+ +l+Gi++G++++l+ +y+sE++p +lRg+l+++ ++++ +G+ +++++   + n+t++ + +ri+ +lq+++++ ll+++ ++PESP++lv
  KKY23823.1 163 VIALQVAEILCGIPWGVFQTLTITYASEVCPVALRGYLTTYVNFCWGLGQTIGIGVIKSMvNRTDE-WAYRIPYALQWMWPVPLLVGIALAPESPWWLV 260
                 ********************************************************9999788888.******************************** PP

                 HTT-HHHHHHHHHHHHHC.....HHHHHHHHHHHHHHHHHHH...........HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-T CS
    Sugar_tr 200 ekgkeeeakevlaklrge.....edadrelaeekdsleaeqeee......kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlgls 287
                  kg+ e+ak+ l +l  +          +++e +++++++   e        ++++++++   r+r+ i+++++++q+l+G n++  ys++++e++gl+
  KKY23823.1 261 RKGRVEDAKKALLRLTSTnketgF----DADETVAMMQHTTALEekitkgASYLDCFKGT--DRRRTEIICMVWAIQNLSG-NSFSSYSTYFLEQAGLN 352
                 **************6666434553....44444444444433333344635666666666..79*****************.***************** PP

                 HH..HHHHHHHHHHHHHHHHHHHHHHHH.S-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTT CS
    Sugar_tr 288 ks..llvtiivgvvnfvatfvaiflvdr.fGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsv 383
                 +s  + + ++ + +n+  +f+a+fl+   fGRR l+l G++g +i+++i+g  + l++++ +aas +    +++++ +++l++g+v++ lv+El++ ++
  KKY23823.1 353 PSkaYDFALGQYGINMGGVFIAWFLMTLgFGRRVLYLYGLCGLFIMLLIMG-FMGLVPDR-TAASLATGSIMLVWALCYQLTVGTVCYSLVAELSTRRL 449
                 **9989999*************9999855*********************9.77777777.6999999999**************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH...T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 384 Rskalaiavavnwlanflisllfpiiteaig...ggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                   k   +  ++ +++ +++s+l+p++++  +   + y ++++ag +   ii+++  vpe +gr++ e++ lf
  KKY23823.1 450 QIKSVVLGRNLYNIVGIICSVLTPYMLNPGEwnwKNYAGFFWAGSCFCCIIYTYYRVPEPAGRSFAELDLLF 521
                 ***************************988888899******************************998765 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   5.5   5.5e-14   3.3e-10     191     352 ..      45     215 ..      19     216 .. 0.79
   2 !   36.3  24.8   5.1e-13     3e-09      34     321 ..     109     436 ..      67     450 .. 0.64
   3 !    8.9  15.1   0.00011      0.64      38     188 ..     360     520 ..     323     547 .. 0.69

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 5.5e-14
       MFS_1 191 tgpaplvpawkallkdpvl..willialllfffgfsg....lltllplylqevlgls..............glllaglllallalvgailallagrlsd 269
                 +++ +++  w+ ++  p    w++li+ ++++ g+ +     ++ +p + ++ +g                g l++g    ++ ++g    ++ g++s 
  KKY23823.1  45 DKELNMSL-WQGIKLYPKAvgWSVLISTCIAMEGYDIcllsNFYAFPQF-NKKYGEQladgsyqvpaswqaG-LSNG--ANVGEIIG---LFINGWVSE 135
                 34444455.8888888877667777777777666666866566667776.8888888999999999999988.9999..99999999...889****** PP

       MFS_1 270 rlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 r+g  r++++++l l++a+ +++++a     ++l ++ +l+G+ +g+++++ +++as+++p   +g ++ ++n++++lg  +g
  KKY23823.1 136 RFGY-RYTVMTCLTLIIAFTAIFFTAKD--VIALQVAEILCGIPWGVFQTLTITYASEVCPVALRGYLTTYVNFCWGLGQTIG 215
                 ***5.99999999999999999999999..4444448899***************************************9998 PP

  == domain 2  score: 36.3 bits;  conditional E-value: 5.1e-13
       MFS_1  34 igllltl...yalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsa 128
                 +++ ++l     +g +++ ++ G++s+rfG r +++++l+l +++ ++++f++    +l v+ +l+G+  g++ ++ +++++++ p   rg  + +++ 
  KKY23823.1 109 ASWQAGLsngANVGEIIGLFINGWVSERFGYRYTVMTCLTLIIAF-TAIFFTAKDViALQVAEILCGIPWGVFQTLTITYASEVCPVALRGYLTTYVNF 206
                 667444444477899******************555555555555.455555555659***************************************** PP

       MFS_1 129 gfslGailgpllggllasslg.........Wravfyilaivsllafvlfllllpeepperkrkspkeee.............................. 188
                 +++lG  +g ++   ++              ++++ +  +v++       +l pe+p    rk  +e+                               
  KKY23823.1 207 CWGLGQTIGIGVIKSMVNRTDewayripyaLQWMWPVPLLVGI-------ALAPESPWWLVRKGRVEDAkkallrltstnketgfdadetvammqhtta 298
                 *********9999988877777775544442222223333333.......3333333333333333333444555669999999999999999998888 PP

       MFS_1 189 ...kgtgpaplvpawkallkdpvlw.illialllfffgfsglltllplylqevlgls...glllaglllallalvgailallagrlsdr..lgrrrrll 278
                    k t++a+ ++ +k   +++    i+ +++++  +  ++++++++ +  e+ gl+   +     + +al++ ++ ++++++++++    +grr   l
  KKY23823.1 299 leeKITKGASYLDCFKGTDRRR--TeIICMVWAIQNLSGNSFSSYSTYF-LEQAGLNpskA-----YDFALGQYGINMGGVFIAWFLMTlgFGRRVLYL 389
                 8887777777777777777777..2223333333334555577777776.999****6653.....334444444444444444444332467777777 PP

       MFS_1 279 lallllllaalglallavt...ssavllll...vlvliGfglgfvfpsl 321
                  +l +l++++l++ ++++    +  +++l+   +++++ +++ ++++++
  KKY23823.1 390 YGLCGLFIMLLIMGFMGLVpdrT--AASLAtgsIMLVWALCYQLTVGTV 436
                 77777777777777777776541..333334455555555544443333 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00011
       MFS_1  38 ltlyalgaavaslplGrlsdr.fGrrrvlllglllfalglllllf........a....sslwlllvlrvlqGlgagalfpagaaliadwfpkeergrai 123
                 + + +   + +++++ +l++  fGrr ++l gl +++++ll++ f        a    +++ ++lv  +       ++ +++++l+a++++++ + + +
  KKY23823.1 360 ALGQYGINMGGVFIAWFLMTLgFGRRVLYLYGLCGLFIMLLIMGFmglvpdrtAaslaTGS-IMLVWALCYQ---LTVGTVCYSLVAELSTRRLQIKSV 454
                 3344444577788888888989*****************6666665655444312221222.2333333333...3478999***************** PP

       MFS_1 124 gllsagfslGailgpllggllasslgWrav...fyilaivsllafvlfllllpeepperkrkspkeee 188
                  l    +++  i+  +l ++++  + W +     ++ a+ ++ +  +++ ++++++p+ + +++ +++
  KKY23823.1 455 VLGRNLYNIVGIICSVLTPYMLNPGEWNWKnyaGFFWAGSCFCC--IIYTYYRVPEPAGRSFAELDLL 520
                 **********************8888888632344555555555..4579*******99999888775 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   2.8     3e-08   0.00018     270     366 ..     120     215 ..      44     221 .. 0.89
   2 ?    0.2   0.4     0.043   2.6e+02     216     258 ..     310     352 ..     287     407 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3e-08
  MFS_1_like 270 vvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralG 366
                  v+ei+ +f++ ++ e++G +  ++++l+++i+   +  + +++  + ++e+L gi  g++    ++y+s++ p  l++ +   ++ +++glG+ +G
  KKY23823.1 120 NVGEIIGLFINGWVSERFGYRYTVMTCLTLIIAFTAIFFTAKDVIALQVAEILCGIPWGVFQTLTITYASEVCPVALRGYL-TTYVNFCWGLGQTIG 215
                 489***********************9998776555555559999999*****************************9965.679999*******99 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.043
  MFS_1_like 216 qvllnilknpeviifllvalilgmswgiienFlflYLkelgas 258
                  + ++   +++  i+++v +i   s + + ++ + +L++ g  
  KKY23823.1 310 LDCFKGTDRRRTEIICMVWAIQNLSGNSFSSYSTYFLEQAGLN 352
                 4555566677777889999999999999999999999998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.48
# Mc/sec: 3613.08
//
Query:       KKY23824.1  [L=636]
Description: putative ethylene receptor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-21   75.3   0.0    1.1e-20   74.2   0.0    1.6  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    8.6e-19   67.8   0.3    3.9e-18   65.7   0.3    2.1  1  Response_reg  Response regulator receiver domain
    1.8e-14   53.5   0.2    4.9e-14   52.1   0.2    1.8  1  HisKA         His Kinase A (phospho-acceptor) domain
    1.3e-05   25.3   0.0    2.9e-05   24.1   0.0    1.7  1  MHYT          Bacterial signalling protein N terminal repeat


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   0.0   2.5e-24   1.1e-20       2      97 ..     198     291 ..     197     314 .. 0.92

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 2.5e-24
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEE CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvese 97 
                 de+ +++i+ nlv+N++kf t +g +++ i+ +e +l i+++D+G Gip + l+ lfe+f q ++t+  + gtGlGlsivk+l + ++G+i+ves 
  KKY23824.1 198 DETYMHRIVMNLVSNSLKF-TASGYVFLCINMHESRLLITITDTGVGIPTSFLPDLFEPFKQ-AQTRGAHRGTGLGLSIVKQLLQNIQGTINVESM 291
                 78999**************.99****999998789***************************.8888889************9999*******764 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.3   8.7e-22   3.9e-18       1     111 [.     477     602 ..     477     603 .. 0.92

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 8.7e-22
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH..ESEEEEESSCSSSEHHHHHHHHHHCTTT..............SEEEEEESST CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek..vdlillDinmpgmdGlellkeireedpe..............lpviiltahs 81 
                   vl+v+D++++++l +++l+  gy ev  a+dg+ a++++ e++  +d+il+D +mp+ dGl +++eire + +               p+i++ta  
    KKY23824.1 477 VLLVEDNKINQKLGTKMLKTLGY-EVLLADDGQHAIDMVTEHDtaIDIILMDQSMPRKDGLSATREIRELEANgtlrgpfgrqssrrRPIIAVTAVV 572
                   89*********************.***************999999************************9944445556666666779********* PP

                   SHHHHHHHHHCTESEEEESSG-HHHHHHHH CS
  Response_reg  82 eeedavealkagaddflsKpfdpeeLlkal 111
                     +    +  ag d fl+Kp++ ++L+++l
    KKY23824.1 573 GPKAEAMCRAAGTDTFLAKPLSLARLRDML 602
                   **************************9987 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.2   1.1e-17   4.9e-14       2      67 .]      86     150 ..      85     150 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 1.1e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 +++f+a+ +HE+rtPL+ ++g++++L+r+ kltee + +l  +++ +r l+ + +++Ld sr+e g
  KKY23824.1  86 RTEFIASASHEIRTPLHQLQGYSDLLSRT-KLTEEGRLLLYAMQDATRTLSLITSNVLDWSRLEKG 150
                 89************************996.*********************************976 PP

>> MHYT  Bacterial signalling protein N terminal repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   6.5e-09   2.9e-05       7      57 ..       1      64 [.       1      66 [. 0.86

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 6.5e-09
        MHYT  7 MHYtGMaAftl.....p......g.pigydpaltalSlliaivas.vlAlalavrrrdtrlrll 57
                MH+tGM A+++     p      g p++ ++a+  ++++++++a+ +lA++++++r++ +++++
  KKY23824.1  1 MHFTGMKAASFksyqpPsnekerGyPTELPVAIGTIAIVTCLAANgLLAHSATIARNKLAEVVR 64
                ***********77776156667755********************99*****999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4651.09
//
Query:       KKY23825.1  [L=368]
Description: hypothetical protein UCRPC4_g02638 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0019   19.1   0.0     0.0046   17.8   0.0    1.6  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
       0.13   12.6   0.8       0.47   10.8   0.8    1.8  1  Gp-FAR-1        Nematode fatty acid retinoid binding protein 


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   5.1e-07    0.0046      15      93 ..     168     238 ..     159     241 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 5.1e-07
                     E-SS----TT.-.EEEEEEEEE....ET-B--EEE..........-.--TT-EEEEE-..B-TEEE--B.-SS..-EEEEEE CS
  2OG-FeII_Oxy_3  15 HvDnfekeegsgqrrltvllyLnekeseeGGelelyekdkeavkik.pkkgrlvlFesdellpHevlpvtkgg..eRlsltg 93 
                     H D            + v+l+L++++  +GGe ++++ d + + +k p+ g++++F+ +++ +H++lp   g+  eR++l++
      KKY23825.1 168 HKDC---------YPFVVILMLSDPKGMSGGETVIRKGDGSLMFVKaPEIGQVLVFQGGRI-EHAALPAD-GSlsERITLVT 238
                     5553.........45789999*988889*******888885555555***********988.6*****84.34689999976 PP

>> Gp-FAR-1  Nematode fatty acid retinoid binding protein (Gp-FAR-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.8   5.2e-05      0.47      36      95 ..     281     345 ..     267     351 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.2e-05
    Gp-FAR-1  36 yknedell....aalKkkspaLy..ekaeklqaklkekvdkLspeakeFvkkliakgrkleaqvla 95 
                 + n+++++    ++l kk++++y  e+++k q  +++kv  L++ +  F+++++a   k+ +++la
  KKY23825.1 281 FSNVQAAIenkkQELRKKYDEIYaqEPVNKSQGLVTKKVVDLKEMGS-FIDEVVAYLNKTADEMLA 345
                 44555554111157999****99334699**************9998.*****9999888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2783.74
//
Query:       KKY23826.1  [L=276]
Description: putative short-chain dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-31  107.7   0.0    6.3e-31  107.3   0.0    1.1  1  adh_short        short chain dehydrogenase
    7.5e-16   58.4   0.0    9.3e-16   58.1   0.0    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.6e-05   24.9   0.0    2.6e-05   24.2   0.0    1.5  1  KR               KR domain
    0.00014   21.8   0.0    0.00022   21.2   0.0    1.3  1  NAD_binding_10   NAD(P)H-binding
  ------ inclusion threshold ------
      0.012   15.1   0.0      0.018   14.5   0.0    1.3  1  Epimerase        NAD dependent epimerase/dehydratase family
      0.034   13.8   0.0      0.059   13.0   0.0    1.4  1  ApbA             Ketopantoate reductase PanE/ApbA
       0.11   11.8   0.6       0.22   10.9   0.5    1.5  1  DUF1776          Fungal family of unknown function (DUF1776)
       0.14   11.9   0.4       0.25   11.1   0.4    1.4  1  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   0.0   2.8e-34   6.3e-31       1     192 [.       7     205 ..       7     208 .. 0.89

  Alignments for each domain:
  == domain 1  score: 107.3 bits;  conditional E-value: 2.8e-34
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG...GGC CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf...sel 96 
                 k +l++Ga+sGIG+ +a +l++ G +v++v+r++++l + ++   +  +  +++++D+td +++  + ++    +  +dv+v N Gi+++ +    + +
  KKY23826.1   7 KKALIIGATSGIGLSLASKLLSTGTHVILVGRRQDRLSHFHSTQPS--NLTTTVPFDITDPSSIPSFAKDLSTTHPDIDVIVLNSGIQRVFDLshpETI 103
                 689**********************************999998876..4799***********************************655544111567 PP

                 SHHHHHHHHHHHTHHHHHHHHHHHHHHH..HCTTEEEEEEEEGGGTSB-.TTBHHHHHHHHHHHHHHHHHHHHHGGGT...EEEEEEEESSBSSHHHHH CS
   adh_short  97 seeewervievNltgvflltravlpaml..kqssGrIvnvsSvagkvpv.agvaaYsAsKaavagltrslakelaptg...irvnavaPGlvdTdmake 189
                 + ++ +    +N+t++++lt a+lp +   +    + v +s + g+vp    ++ Y A+K a+++++ +l++ l++++   ++v+ v P++v+T++  e
  KKY23826.1 104 NLSTLDLETTTNYTSYVHLTTALLPLLQaqSPTPTSLVYISATLGLVPGlLRTPNYNATKTALHSFILCLREKLKDREdnnVKVIEVFPPAVQTELHDE 202
                 77888888******************995555678**********8876157889*******************9987788***************988 PP

                 HCT CS
   adh_short 190 lre 192
                 + +
  KKY23826.1 203 KHQ 205
                 776 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   4.2e-19   9.3e-16       1     183 [.      13     204 ..      13     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 4.2e-19
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG..CSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapk..lkgpfletsreef 95 
                   Ga sgIG  +A +l + G +v+l+ +++++ ++ ++ + +  ++ ++ D+td++++ ++++++  ++  +D++v n gi +   l+ p ++++ + +
    KKY23826.1  13 GATSGIGLSLASKLLSTGTHVILVGRRQDRLSHFHSTQPSNLTTTVPFDITDPSSIPSFAKDLSTTHPDIDVIVLNSGIQRVfdLSHP-ETINLSTL 108
                   999**************************9788888877767778*************************************754443.66799999 PP

                   HHHHHHHTHHHHHHHHHHHHHCTSC....CEEEEEEEGGGTSB.STTTTHHHHHHHHHHHHHHHHHHHHGG...GTEEEEEEEE--BHCTGGGGST CS
  adh_short_C2  96 draldvnlyslfllakaalplmkeg....gsivnlssvgaerv.vpnynaygaaKaalealtrylAvelgp...kgiRvNavspgpikTlaasgik 183
                   d    +n +s+++l+ a+lpl++++     s+v +s + + +  +  +  y+a+K al++++ +l  +l +   ++++v  v p +++T++ ++ +
    KKY23826.1 109 DLETTTNYTSYVHLTTALLPLLQAQsptpTSLVYISATLGLVPgLLRTPNYNATKTALHSFILCLREKLKDredNNVKVIEVFPPAVQTELHDEKH 204
                   99999***************99999899999****99977766255556***********999998888764447899999999999999876654 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.2e-08   2.6e-05       4      94 ..      10      94 ..       8     178 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.2e-08
                EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------- CS
          KR  4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrd 94
                li+G++ g+Gl+la  l++ g +h++l++R+  +d+   + +++ + +    ++v+ D++d++++ +  +++++++p i  ++   g+ r 
  KKY23826.1 10 LIIGATSGIGLSLASKLLSTG-THVILVGRR--QDRL--SHFHSTQPS-NLTTTVPFDITDPSSIPSFAKDLSTTHPDIDVIVLNSGIQRV 94
                9*****************999.6999*****..2333..334444443.34567899***********************99999888765 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   9.6e-08   0.00022       1      59 [.      13      73 ..      13     113 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 9.6e-08
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH..CTTTCE.EEE--TT-CCHHHHHHT CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaele..aeegle.vvegdvtdvedlaealk 59
                    GAt ++G  l+++ll+ g ++v ++ R++++l+++   + ++l+ +v  d+td++++ +  k
      KKY23826.1 13 GATSGIGLSLASKLLSTG-THVILVGRRQDRLSHFHstQPSNLTtTVPFDITDPSSIPSFAK 73
                    9****************5.9*************997445577762677*****999876666 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   8.1e-06     0.018       1      62 [.       9      74 ..       9     101 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.1e-06
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC....EEEE--TT-HHHHHHHHHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl....elveldltdrsalerlfke 62
                +l++Gat  iG  l+ +ll+ g +vi + r++++  + +  +     + v  d+td+s++  + k+
  KKY23826.1  9 ALIIGATSGIGLSLASKLLSTGTHVILVGRRQDRLSHFHSTQPsnltTTVPFDITDPSSIPSFAKD 74
                59**********************999999977666665555589999**********98887765 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.6e-05     0.059       3      47 ..      11      58 ..       9      88 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.6e-05
                EES-S.HHHHHHHHHHHHHTHCEEEE-SCH.HHHH.HHHHCEEEEETT CS
        ApbA  3 ilGaG.aiGsllaakLakagadvtlilrsr.rlea.lkknGlrltseg 47
                i+Ga  +iG  la kL  +g +v+l++r++ rl +  +++ ++lt+  
  KKY23826.1 11 IIGATsGIGLSLASKLLSTGTHVILVGRRQdRLSHfHSTQPSNLTTTV 58
                7777526***********************999994444445555555 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5   9.6e-05      0.22     108     193 ..     100     188 ..      92     191 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.6e-05
     DUF1776 108 ietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsi..sssl..nlpfhapEalvssalsalfevLkrelrphnidvt 193
                  eti ls++  e +++  s++ +++allpll++++ + + ++ +++ +  +  l   + + a+ + + s +  l e Lk      n++v+
  KKY23826.1 100 PETINLSTLDLETTTNYTSYVHLTTALLPLLQAQSPTPTSLVYISATLglVPGLlrTPNYNATKTALHSFILCLREKLKDRED-NNVKVI 188
                 589******************************99777777766554411444433455667777777777766666665554.566665 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   0.00011      0.25      40      55 ..       6      21 ..       1      34 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
                     -SEEEEESTSSHHHHH CS
  Eno-Rase_NADH_b 40 pkkvLviGaStGYGLA 55
                      kk+L+iGa +G GL+
       KKY23826.1  6 YKKALIIGATSGIGLS 21
                     69************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 1807.72
//
Query:       KKY23827.1  [L=323]
Description: hypothetical protein UCRPC4_g02640 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-20   72.4   0.0    6.3e-20   71.7   0.0    1.3  1  Bestrophin  Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> Bestrophin  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.0   3.5e-24   6.3e-20     117     290 ..      36     240 ..       2     244 .. 0.66

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 3.5e-24
  Bestrophin 117 vlllvlffralssrvrkr.............................fptlehlleagllteeeakile.............................. 156
                 ++++ +f+ al++r+r +                                                  +                              
  KKY23827.1  36 INMINAFASALKHRLRFEpaadypdlapyvahlgnamavnanqealhT--------------------Kkqtpwkttgerlgvsfaisnprkilkrske 114
                 556666666666666666666666554444444444443333333321....................0233333333333333444444444447666 PP

  Bestrophin 157 nkywvplqWavsllrrlaerlkelakegrikddqalkeleeelnelraklgsleridwtpiPlvYtqvvtravylyfllallgrqfldseidlylPvft 255
                 n  ++p +    +l+ l+++ +el k++ +    a   + + + +l ++lg++eri +tp+P++Y++ + ++++ y ++               lP f+
  KKY23827.1 115 NLGNLPHE----ILTYLQSYAEELFKNETMALGGAQVLILNDIRALAEVLGGCERILNTPLPIAYSIAIAQITWAYIIV---------------LP-FQ 193
                 66778888....55555555445555555555557779*****************************************...............88.77 PP

  Bestrophin 256 llq............faffffGllkvaeqlenPFGedddDlelnali 290
                 l+              +++++Gl  ++ ++enPFG+d +Dl ++  +
  KKY23827.1 194 LVGtlqwiaipasviASYIILGLASIGREIENPFGTDVNDLNMDSYC 240
                 77777788888888777**************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 2042.73
//
Query:       KKY23828.1  [L=1673]
Description: putative peroxisomal-coenzyme a synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.9e-64  215.8   0.0    1.4e-63  214.9   0.0    1.4  1  AMP-binding    AMP-binding enzyme
    3.9e-14   52.7   0.2    8.1e-14   51.7   0.2    1.6  1  PP-binding     Phosphopantetheine attachment site
    4.2e-09   35.8  10.1    3.1e-05   23.5   0.0    4.7  6  Hexapep        Bacterial transferase hexapeptide (six repeats
  ------ inclusion threshold ------
      0.025   14.4  14.5       0.84    9.4   0.1    5.5  6  Hexapep_2      Hexapeptide repeat of succinyl-transferase
       0.05   14.6   0.1        1.3   10.0   0.0    2.6  2  AMP-binding_C  AMP-binding enzyme C-terminal domain
        2.3    8.1   8.0       0.39   10.6   2.1    2.7  3  DUF5362        Family of unknown function (DUF5362)


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.9   0.0   4.8e-67   1.4e-63      11     422 ..     108     502 ..     103     503 .. 0.83

  Alignments for each domain:
  == domain 1  score: 214.9 bits;  conditional E-value: 4.8e-67
                  SEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEE.TCTCCCH CS
  AMP-binding  11 kvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvlia.tvdsell 107
                   +al d + + tl+ +  ++ v+ +  gL  + v+k  rV+++lpn+p + +a +a+  +  + +p+ ++ +a++ ++ +e++ea++++    d e+l
   KKY23828.1 108 VPALLDAQNDATLSHGAIRRFVEDFDLGLAPRSVGK-PRVVVALPNGPLLGLACMAVSTY-YTMAPMTTHCGADQFRHDVEKVEASAILVlGSDVEKL 203
                  567766566788888888888888888888557776.58*****************9877.7889************************322222232 PP

                  HHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSCCTTT-EE CS
  AMP-binding 108 eklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfklkeddvv 205
                   +l++   ++   ++ +v  + ++ ++  l ++        ++ +++++++dd+a++++TSGT G  K V + +  lva va +   + ++l+++d++
   KKY23828.1 204 -ELNSPWVSEANISVFTVQPHHDMTFSVSLLNQPL--FI--RQ-TAVANTADDIAILLFTSGTSGDKKLVPIPTHTLVAGVAFV--IDSWGLTAQDRC 293
                  .2333333333444444444444444333322222..22..24.56689*******************************8885..6789999***** PP

                  EESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CCCHHCHHHHCCGTT-SEEEEESS-EBHHHHHH CS
  AMP-binding 206 lsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvlealle.sgalkaakkakdlsslrlvllggeplspellrf 302
                  l ++pl h+ g++ +l++++++G++ ++++ ++   p+l+++l+e+ ++t  ++ P++  ++l+ ++++    +a + s++r+v  +++ l p+l+++
   KKY23828.1 294 LNMMPLNHVGGIVRNLFAPVMAGGSTICCSSFD---PNLFWDLVENRGATWYYASPSMHTMILAeAENRP---DAVQKSRVRIVCNAAGGLLPTLATQ 385
                  ****************************99665...57889*********************99554444...3335677***988************ PP

                  HHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEETCCEEEEEE CS
  AMP-binding 303 fralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafdsegrwlrTGD 400
                  +r++f ++vl +YG+TE+ +++t +pl+ +  ++g+ G  + g  ++i+++ +g  +p+ ++G ++vrg+ v++gYlk      ++f+ +++w+ TGD
   KKY23828.1 386 LRSTFDCTVLPSYGMTECMPIAT-PPLDYRLDRPGTSGISI-GPGLAILNPVDGTKLPPRTTGNICVRGAPVFPGYLKANNIDTSVFT-QDGWFDTGD 480
                  ***********************.***************96.778*********************************88999999*9.867****** PP

                  EEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 401 lgrldedGyleivgRkkdlikl 422
                  +g++dedGyl+i+gR+k++i++
   KKY23828.1 481 MGYMDEDGYLYITGRSKEVINR 502
                  ********************86 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.2   2.7e-17   8.1e-14       1      67 []     750     816 ..     750     816 .. 0.97

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 2.7e-17
  PP-binding   1 eklrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67 
                 ++++e +a++lg+++ +id +td+f  G+DSl + +ll++l+++fgv++  +dlf++ t+++++a+l
  KKY23828.1 750 RQVQESFASILGLSVGDIDESTDFFAAGGDSLRVGRLLSSLRAKFGVRLKTEDLFTNGTISAVSALL 816
                 5899**********************************************************99875 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.42   1.3e+03      21      31 ..     972     982 ..     970     987 .. 0.59
   2 ?   -2.6   0.0       1.8   5.4e+03      21      27 ..     992     998 ..     991    1001 .. 0.61
   3 !   14.5   0.9   7.5e-06     0.022       2      32 ..    1020    1050 ..    1019    1051 .. 0.95
   4 ?   -1.0   0.1      0.55   1.7e+03      22      32 ..    1239    1249 ..    1237    1252 .. 0.66
   5 !   23.5   0.0     1e-08   3.1e-05       2      33 ..    1262    1293 ..    1261    1296 .. 0.93
   6 ?   -4.1   0.0       5.5   1.6e+04      22      33 ..    1618    1629 ..    1617    1631 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.42
                 EE-TTEEEETT CS
     Hexapep  21 kIGdnvkIgag 31 
                   G+nv+I + 
  KKY23828.1 972 RMGRNVTISNK 982
                 45777777664 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.8
                 EE-TTEE CS
     Hexapep  21 kIGdnvk 27 
                 +IGdn++
  KKY23828.1 992 EIGDNAV 998
                 5666665 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 7.5e-06
                  EEEETTEEE-TTEEEETTEEE-TTEEEETTE CS
     Hexapep    2 tvIGsnvlIgpfaviggnVkIGdnvkIgagv 32  
                  ++IG+n+ +g  ++i++++++ dn++Ig+++
  KKY23828.1 1020 IKIGKNSSVGIKSIIAPGATVPDNTCIGPNS 1050
                  68***************************97 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.55
                  E-TTEEEETTE CS
     Hexapep   22 IGdnvkIgagv 32  
                  +G++v+ g+ +
  KKY23828.1 1239 VGNDVVFGSRA 1249
                  67777777755 PP

  == domain 5  score: 23.5 bits;  conditional E-value: 1e-08
                  EEEETTEEE-TTEEEETTEEE-TTEEEETTEE CS
     Hexapep    2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvv 33  
                  ++IG++++I   av+++++++G+++++g+g+ 
  KKY23828.1 1262 IKIGDGAMIADRAVVLPGTTVGERTVLGSGAL 1293
                  69****************************96 PP

  == domain 6  score: -4.1 bits;  conditional E-value: 5.5
                  E-TTEEEETTEE CS
     Hexapep   22 IGdnvkIgagvv 33  
                  +Gd++++  g++
  KKY23828.1 1618 VGDRSVLRTGSR 1629
                  788888888776 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.068     2e+02      18      26 ..     991     999 ..     971    1000 .. 0.84
   2 ?    8.7   0.4   0.00048       1.4       2      30 ..    1020    1050 ..    1019    1051 .. 0.93
   3 ?    4.3   0.3     0.011        33       4      26 ..    1239    1270 ..    1237    1271 .. 0.86
   4 ?    9.4   0.1   0.00028      0.84       2      29 ..    1262    1291 ..    1261    1293 .. 0.95
   5 ?   -2.1   0.1       1.1   3.4e+03       4       9 ..    1566    1571 ..    1563    1575 .. 0.60
   6 ?   -4.0   0.0       4.4   1.3e+04      20      29 ..    1618    1627 ..    1618    1628 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.068
                 EEE-TT-EE CS
   Hexapep_2  18 vslGdncvv 26 
                 +++Gdn+v+
  KKY23828.1 991 IEIGDNAVL 999
                 89*****98 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00048
                  EEE-TT-EE-TT-EE..SEEE-TT-EE-TT- CS
   Hexapep_2    2 viIGdnCliGanagi..GvslGdncvvgaGv 30  
                  ++IG+n+ +G  ++i  G ++ dn  +g+++
  KKY23828.1 1020 IKIGKNSSVGIKSIIapGATVPDNTCIGPNS 1050
                  89*************9********9999996 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.011
                  E-TT-EE-TT-E.E...S.....EEE-TT-EE CS
   Hexapep_2    4 IGdnCliGanag.i...G.....vslGdncvv 26  
                  +G+++++G++a  i   G     +++Gd++ +
  KKY23828.1 1239 VGNDVVFGSRAHlItsdGygnekIKIGDGAMI 1270
                  8***********87899455999******987 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.00028
                  EEE-TT-EE-TT-EE..SEEE-TT-EE-TT CS
   Hexapep_2    2 viIGdnCliGanagi..GvslGdncvvgaG 29  
                  ++IGd  +i  +a++  G+++G++ v+g+G
  KKY23828.1 1262 IKIGDGAMIADRAVVlpGTTVGERTVLGSG 1291
                  79************99************99 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 1.1
                  E-TT-E CS
   Hexapep_2    4 IGdnCl 9   
                  IG++C 
  KKY23828.1 1566 IGKDCA 1571
                  666664 PP

  == domain 6  score: -4.0 bits;  conditional E-value: 4.4
                  E-TT-EE-TT CS
   Hexapep_2   20 lGdncvvgaG 29  
                  +Gd++v+  G
  KKY23828.1 1618 VGDRSVLRTG 1627
                  7999999777 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00044       1.3       9      74 ..     528     594 ..     526     595 .. 0.82
   2 ?    1.5   0.0       0.2   6.1e+02      40      75 ..     689     725 ..     659     726 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00044
                    STTEEEEEEE-----TTS---EEEEEE----.--HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TT CS
  AMP-binding_C   9 hpaVaeaaVvGvpdevkGealvafVvlkdgs.ealeeeLkahvrkelgpyavpkkvvfvdelpktrs 74 
                    h  V++a ++ vp+ev  e++  ++v ++g+ ++  +++ + vr+ l   + p  v   d lpk ++
     KKY23828.1 528 HGRVSDALAFSVPHEVLQEVVGIVIVTSPGKpSPDLRQIHEAVRSSLDQPKWPFLVAYMDGLPKAKN 594
                    788************7776666666656674355789************999999999999999766 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.2
                    --HHHHHHHHHHHHT-TTTS-SEEEE-S-.--B-TTS CS
  AMP-binding_C  40 ealeeeLkahvrkelgpyavpkkvvfvde.lpktrsG 75 
                    ++ +++L+a++r+++  + vp+ ++ +d   p+t  G
     KKY23828.1 689 KDAARHLEARLRHRVDGILVPSSIKYLDGpKPLTSEG 725
                    23789********************998657878766 PP

>> DUF5362  Family of unknown function (DUF5362)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.54   1.6e+03      41      86 ..     814     859 ..     808     862 .. 0.87
   2 ?   -4.6   0.8         6   1.8e+04      74      89 ..    1428    1443 ..    1424    1456 .. 0.61
   3 ?   10.6   2.1   0.00013      0.39      11      38 ..    1474    1501 ..    1466    1506 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.54
     DUF5362  41 klfkaakaikealrskseeklkealeklakylkillilliielvls 86 
                  l ++a a ++ ++  ++++l +  e  +    +lli+ +i ++l+
  KKY23828.1 814 ALLDQALAAQNLSSDGQPKELPGCTETYSSTHPLLLIIHLIPIALV 859
                 4778888999999999999**********************99985 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 6
     DUF5362   74 illilliielvlsill 89  
                  i+l  ++i +++++ +
  KKY23828.1 1428 IFLYSTLITMIVVVYW 1443
                  4444555556555555 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00013
     DUF5362   11 lGvlliilGaltcLsIigiiigvllIiv 38  
                  l +++++lGa++c++   +ii++ +Ii+
  KKY23828.1 1474 LSIYAVMLGAIACITFTQAIIALAVIIA 1501
                  689***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.51
# Mc/sec: 9809.07
//
Query:       KKY23829.1  [L=140]
Description: putative atp-dependent rna helicase mak5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.036   12.5   0.2      0.041   12.3   0.2    1.1  1  NUT          NUT protein
        0.1   12.8   0.1       0.54   10.5   0.1    2.3  2  DnaB_bind    DnaB-helicase binding domain of primase
       0.14   12.4   0.0       0.28   11.4   0.0    1.5  1  SelB-wing_2  Elongation factor SelB, winged helix


Domain annotation for each model (and alignments):
>> NUT  NUT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   6.9e-06     0.041     463     514 ..      30      79 ..      27     105 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.9e-06
         NUT 463 eELEqEEgLtldqlveKrlLalkeeesvraapshsapqldssaSeseagqda 514
                 eE+E+  + tl ql+++ +La++e e+++++     +++ ss+Ses+ + ++
  KKY23829.1  30 EEMERGPRSTLLQLIAQECLASEESETAGVTRL--IAKVHSSSSESDGKSGR 79 
                 899*******************98888777765..56667777777655554 PP

>> DnaB_bind  DnaB-helicase binding domain of primase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.48   2.9e+03       8      29 ..      43      64 ..      38      72 .. 0.63
   2 ?   10.5   0.1   9.1e-05      0.54      36      54 ..     114     132 ..      89     134 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.48
                TTTT--TTSHHHHHHHHHHHHH CS
   DnaB_bind  8 llegydlstpegkaravrealp 29
                l+++ +l ++e  ++ v ++++
  KKY23829.1 43 LIAQECLASEESETAGVTRLIA 64
                5566666666666666666655 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 9.1e-05
                 SHHHHHHHHHHHHHHHT-- CS
   DnaB_bind  36 dpieRdlYirrlAerlgid 54 
                  +++Rd +i + Ae+lg+d
  KKY23829.1 114 KAATRDDWIHKAAEELGVD 132
                 5789**************8 PP

>> SelB-wing_2  Elongation factor SelB, winged helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.7e-05      0.28      22      56 ..      91     123 ..      87     123 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.7e-05
                  HHHHCSSSS-HCCHHHHHHHHHHTTSEEE-SSEEE CS
  SelB-wing_2  22 Lrsrlaprlpaklfqallealvargilavegdwvh 56 
                  L +rl+pr+  kl q++++a +a+ + a ++dw+h
   KKY23829.1  91 LINRLSPRV--KLSQKITDAILAKEKAATRDDWIH 123
                  556666665..59*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 980.08
//
Query:       KKY23830.1  [L=795]
Description: putative stress activated map kinase interacting protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-40  136.5   0.0    1.2e-39  135.7   0.0    1.4  1  CRIM      SAPK-interacting protein 1 (Sin1), middle CRIM doma
    4.1e-26   91.4   0.1    7.4e-26   90.6   0.1    1.4  1  SIN1_PH   SAPK-interacting protein 1 (Sin1), Pleckstrin-homol


Domain annotation for each model (and alignments):
>> CRIM  SAPK-interacting protein 1 (Sin1), middle CRIM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7   0.0   1.3e-43   1.2e-39       2     141 .]     341     495 ..     340     495 .. 0.97

  Alignments for each domain:
  == domain 1  score: 135.7 bits;  conditional E-value: 1.3e-43
                 --SSS---SSSS-SSSCCCCCGCCTTTT.-T-EEECCE-TT-SSTTS.---CCC-......SSSCTCCCCCCCCCCCHCHT-SS-SS...SCGGCSTTC CS
        CRIM   2 SlLsalLeakkeksenpleeyaalsgkgessslklkiyvpfskkpsvkplevkvr......kdatvaevIGlaLykyveekrepeldeeleeeklnvnr 94 
                 SlLsa+L+++k++++nple+++ lsgkg++++l++kiy+pfs+kp+  p+ev ++       ++tv e+ G+aL++y+ee+ +p+++     + lnvn 
  KKY23830.1 341 SLLSAALRSQKQSPANPLEKFQGLSGKGSPNPLYIKIYAPFSNKPE-APFEVLLNrqnkegVNVTVGEATGFALWRYSEEDIQPSVE----PQDLNVNS 434
                 9***************************99****************.6*******9**9988*************************....789***** PP

                 CEECCE-CT--EECCCCCC-TTSCCHHH-...............BSEEEEEE-SCHHHCCHC CS
        CRIM  95 wtLriveeDgevdedFPaldrtrpiskfs...............fdelaLveaseeeveene 141
                 w Lr+v eDgev++dFPal r rp+ +f+               +de+aLv+a++ e +ene
  KKY23830.1 435 WVLRMV-EDGEVEYDFPALGRVRPMMDFTnnnvrgargrsrdrpWDEFALVKANSREKAENE 495
                 ******.6*************************************************99996 PP

>> SIN1_PH  SAPK-interacting protein 1 (Sin1), Pleckstrin-homology
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.1   8.3e-30   7.4e-26       3     107 ..     691     791 ..     689     794 .. 0.93

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 8.3e-30
     SIN1_PH   3 yksyrvyikqkm..laksevtLaIdgekieidpvknkkkatkfwaksqKtvsyhidsvvhckiserksskalfrivvkksssefKrydfeadsakeAee 99 
                 yk+y v +kq+m   + + ++ + dg++i+i+p++++k    +++ + K +s+ ++++ +ck+s+++++  +f++vv +  se+Krydfea+ a eA+e
  KKY23830.1 691 YKRYAVIRKQPMsfSQANPRIVTFDGDYIHIIPAETTK---TLYNTNPKSTSILFSNILGCKVSRKHPK--SFKLVVRR-GSESKRYDFEAKDALEAQE 783
                 9***********8777889*****************65...367788**********************..********.******************* PP

     SIN1_PH 100 Ivnkinki 107
                 Iv++++k+
  KKY23830.1 784 IVDEVQKM 791
                 *****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 5365.73
//
Query:       KKY23831.1  [L=367]
Description: putative camp-dependent protein kinase catalytic subunit 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-65  220.8   0.0    3.2e-64  216.9   0.0    2.0  1  Pkinase      Protein kinase domain
    8.3e-32  110.5   0.0    3.8e-31  108.3   0.0    1.8  1  Pkinase_Tyr  Protein tyrosine kinase
    0.00012   21.5   0.1    0.00027   20.3   0.1    1.6  1  Kinase-like  Kinase-like
  ------ inclusion threshold ------
      0.044   13.1   0.4        0.1   11.9   0.4    1.5  1  Rad21_Rec8   Conserved region of Rad21 / Rec8 like protein


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.9   0.0   7.1e-68   3.2e-64       2     264 .]      41     311 ..      40     311 .. 0.93

  Alignments for each domain:
  == domain 1  score: 216.9 bits;  conditional E-value: 7.1e-68
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                   +++lG+GsfG+V  + +k++++ +AvK++kk++  k+k+ +++  E ++l ++khp++++l+++f+++++ly+v++++eggel++ll++++ +++  
  KKY23831.1  41 AIQRTLGTGSFGRVHLVQSKHNQRFYAVKVLKKQQVVKMKQiEHTNDERTMLCRVKHPFLITLWGTFQDSKNLYMVMDFIEGGELFSLLRKSQRFPNPV 139
                 56799***********************************99********************************************************* PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHH................HH CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDv................Ws 182
                 ak++a+++  +leylH+++ii+rDlKpeN+L+d++g+lKitDFG+ake+   +   + +gt++YlAPEv+ +++y k+vD+                Ws
  KKY23831.1 140 AKFYAAEVTLALEYLHAQHIIYRDLKPENLLLDRHGHLKITDFGFAKEVPDIT--WTLCGTPDYLAPEVVASKGYNKSVDWlvvlqledvsladirrWS 236
                 *************************************************9965..************************988888999999999999** PP

                 HHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT.....HHHHHTSGGG CS
     Pkinase 183 lGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt.....aeellqhpyl 264
                 lG++++e+l+g +pf++  +     k++++      il   k  ++ +  i ++a+dll +l++ d +kRl+      +++++hp++
  KKY23831.1 237 LGILIFEMLCGFTPFWDGGSPV---KIYEN------IL---KGRVKYPPYIHPDAQDLLVQLITPDLTKRLGnlhggSQDVKNHPWF 311
                 ****************333333...33333......33...45788999***********************999999********8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   0.0   8.5e-35   3.8e-31       3     249 ..      42     294 ..      40     296 .. 0.84

  Alignments for each domain:
  == domain 1  score: 108.3 bits;  conditional E-value: 8.5e-35
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTS..SHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeea..teeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkeke 98 
                  ++++lG G+fG+V+  + k    +++   avK+lk+++  + ++ e+  +e ++++++khp ++ l g   ++++l++v+++++gG+L + Lrk+  +
   KKY23831.1  42 IQRTLGTGSFGRVHLVQSK----HNQRFYAVKVLKKQQvvKMKQIEHTNDERTMLCRVKHPFLITLWGTFQDSKNLYMVMDFIEGGELFSLLRKS--Q 133
                  789***********99999....666777888886654115566788888********************************************8..7 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..............E CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..............f 182
                  ++       +a++v  ++eyL++++++ rdl   N Ll+++ + ki+DfG a+++        + +      ++apE++ +k                
   KKY23831.1 134 RFPNPVAKFYAAEVTLALEYLHAQHIIYRDLKPENLLLDRHGHLKITDFGFAKEV-----PDITWTLCGTPDYLAPEVVASKGynksvdwlvvlqleD 226
                  78888888899********************************************.....22233444556899999999888556667776555443 PP

                  EHHHHH..HHHHHHHHHHHTTSSGTTTTS.HHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr 183 tsksDv..WsfGvllwEiftlgespypgl.kneevleklkegkrlekpekcpeelyelmkkcweedpeeR 249
                   s +D+  Ws G+l++E+++ g +p+++  ++ +++e++ +g r++ p +++++ ++l+ +  + d ++R
   KKY23831.1 227 VSLADIrrWSLGILIFEMLC-GFTPFWDGgSPVKIYENILKG-RVKYPPYIHPDAQDLLVQLITPDLTKR 294
                  34456577***********9.9999999889*******9876.789999999999999999988888877 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   6.1e-08   0.00027     125     250 ..     123     251 ..      64     276 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 6.1e-08
  Kinase-like 125 eilnkvlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl.sevekgfaPpEllgsrggytr 221
                  + l+++l k + + ++ ++   + +Tl       +L+a+ ++  +++++nllld++g l++++f+    + +       ++  +  pE+++s+ gy++
   KKY23831.1 123 GELFSLLRKSQRFPNPVAKFYAAEVTL----ALEYLHAQHIIYRDLKPENLLLDRHGHLKITDFGFAKEVPDITWTlCGTPD-YLAPEVVASK-GYNK 214
                  567777777777766666555555555....4489*****************************988887776664255555.5567999995.5666 PP

  Kinase-like 222 knktkmthkld.a.......WqlGlviyriwclklPl 250
                       +  +l+ +       W lG+ i+ + c   P+
   KKY23831.1 215 SVDWLVVLQLEdVsladirrWSLGILIFEMLCGFTPF 251
                  66655555543212223344************99887 PP

>> Rad21_Rec8  Conserved region of Rad21 / Rec8 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   2.2e-05       0.1      22      40 ..      63      81 ..      62      85 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.2e-05
                HHHHHHHHHHHHTSEEEEE CS
  Rad21_Rec8 22 rlFyelLvLatkgvIkvkQ 40
                + Fy + vL++++v+k+kQ
  KKY23831.1 63 QRFYAVKVLKKQQVVKMKQ 81
                67***************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 2364.36
//
Query:       KKY23832.1  [L=436]
Description: putative family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-52  178.1   0.0    2.6e-52  177.5   0.0    1.3  1  DUF155    Uncharacterised ACR, YagE family COG1723


Domain annotation for each model (and alignments):
>> DUF155  Uncharacterised ACR, YagE family COG1723
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.5   0.0   1.5e-56   2.6e-52       1     175 [.     211     382 ..     211     383 .. 0.97

  Alignments for each domain:
  == domain 1  score: 177.5 bits;  conditional E-value: 1.5e-56
      DUF155   1 vfiFknGsvVfwgldeeeeknflnkllkflneeselpreeeqeteeleyvydeqsessrikgdvivl.kskslleklaiShalaqSvkLdvlEesldel 98 
                 +fiF++G+vV+wg++ ++e++fln++ kf++ +  lp++++q  e+++++y++ +++ ri++d i l + k+ + klaiShalaqSvk +++E++++++
  KKY23832.1 211 IFIFDYGTVVIWGMSPAQERRFLNDMGKFADTP--LPPQSTQ-AENFNFYYTK-EYQARIYNDFISLrEPKNYMIKLAISHALAQSVKTSLFEDLVSTT 305
                 7****************************9987..7788888.8*****9987.999**********8888**************************** PP

      DUF155  99 lestekipkelakkgklklsrkellkktgellslrinlnlkselldtPdffWeepeleslyeavseyleikeRikiL 175
                 +e++ ++p+ +a++g+++l+r+el  ++gel+ lrin+ l+ ++ld+P+++W ep+le++y+av++ylei++R+++L
  KKY23832.1 306 IETCAPLPALIAETGSVNLTRRELNMQVGELFILRINIHLQGSVLDNPELMWAEPQLEPVYQAVRSYLEIDQRVELL 382
                 **************************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 2790.79
//
Query:       KKY23833.1  [L=243]
Description: putative histone [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-18   66.6   0.0    2.7e-18   66.1   0.0    1.1  1  Lectin_leg-like  Legume-like lectin family
    2.8e-08   33.8   0.1    4.4e-08   33.2   0.1    1.3  1  CENP-T_C         Centromere kinetochore component CENP-T hist
    9.5e-05   22.8   0.1    0.00015   22.1   0.1    1.4  1  Histone          Core histone H2A/H2B/H3/H4
    0.00029   21.0   0.1    0.00047   20.3   0.1    1.3  1  TAF              TATA box binding protein associated factor (
    0.00072   19.8   0.0     0.0013   19.0   0.0    1.5  1  CBFD_NFYB_HMF    Histone-like transcription factor (CBF/NF-Y)
    0.00085   19.7   0.0     0.0015   18.9   0.0    1.4  1  CENP-S           CENP-S protein
  ------ inclusion threshold ------
       0.02   14.9   0.0      0.031   14.3   0.0    1.2  1  TFIID-31kDa      Transcription initiation factor IID, 31kD su
      0.021   14.9   0.0      0.037   14.0   0.0    1.4  1  Bromo_TP         Bromodomain associated


Domain annotation for each model (and alignments):
>> Lectin_leg-like  Legume-like lectin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   1.2e-21   2.7e-18     129     224 ..       1     100 [.       1     105 [. 0.86

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 1.2e-21
                      EEEESSC---GGGTTTTTESEEEE-.--BTESSEEEEEEEEETTEEEEEEETSCCSCCCTTEEEEEES.....SEE--SSBEEEEEEEESSSGG CS
  Lectin_leg-like 129 mlndgsleydhekdgkaqelasCta.dfrnkdvetlikikYdknaltvlidsgllenkndyklCfqvk.....evelPtgyyfgvsaatgdlsd 216
                      m++dg++ yd+e+d k +e+a+C+a + rn +v+t++k++Y ++ ++++ +  + + ++ +  Cf+++      ++lP+ +y+g+sa+tg+lsd
       KKY23833.1   1 MVGDGNTAYDQEHDNKGTEVAGCSArGLRNANVPTKAKLTYLQD-KSLTLQLQY-KSEDTWTDCFSITptesrPLKLPSVSYLGFSAETGELSD 92 
                      799*********************989**************974.555666555.99********99622222589****************** PP

                      EEEEEEEE CS
  Lectin_leg-like 217 nhdvlsll 224
                      n d++s+ 
       KKY23833.1  93 NFDIISVD 100
                      ****9986 PP

>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1     2e-11   4.4e-08      17      79 ..     174     236 ..     164     239 .. 0.85

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 2e-11
    CENP-T_C  17 akrfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmkrqrk 79 
                 a r   ++g  +++++  ++    +++ f+e v +D  +y++Ha+RKt+ + Dv+  +krq++
  KKY23833.1 174 AIRRLARRGGVKRISAMIYEETRGVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 236
                 4333344567779999999******************************************86 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   6.8e-08   0.00015      78     129 ..     181     232 ..     158     234 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 6.8e-08
                 TSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHH CS
     Histone  78 ekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArr 129
                 ++  +risa+  +    +l+ +l+++  +A  +++haKR+T+t+ D+  A++
  KKY23833.1 181 RGGVKRISAMIYEETRGVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALK 232
                 66778888888888889999***************************99987 PP

>> TAF  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   2.1e-07   0.00047       8      66 .]     174     232 ..     168     232 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.1e-07
                 HHHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH- CS
         TAF   8 svkviAeslGitnLsdeaaalLaedveyrlkeivqeaakfmrhskRqkLtvaDvdsALr 66 
                 +++ +A   G++ +s+   ++    ++  l  ++++a+ +++h+kR++ t+ Dv +AL+
  KKY23833.1 174 AIRRLARRGGVKRISAMIYEETRGVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALK 232
                 55556666666666655555555556666889*************************98 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   5.6e-07    0.0013       8      65 .]     175     231 ..     168     231 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 5.6e-07
                    HHHHHHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF   8 vkkImksdpdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65 
                    ++++ +   ++++i+    e    +++ f+e++ + A+ +++++krKt++  ++  A+
     KKY23833.1 175 IRRLARRG-GVKRISAMIYEETRGVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYAL 231
                    66777777.7777888888888888999*************************98876 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   6.5e-07    0.0015      42      73 ..     203     234 ..     166     237 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 6.5e-07
      CENP-S  42 lenlakDLeaFakHAkRstittdDvlLlaRrn 73 
                 le++ +D  ++ +HAkR+t+t  Dv+  ++r+
  KKY23833.1 203 LESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 234
                 889999*******************9988885 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.4e-05     0.031      16      70 ..     180     234 ..     172     241 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-05
  TFIID-31kDa  16 aslgvteyeerVvlqLldfayrytssvLedAkvlaehakkkevslddvrlAiqsr 70 
                  +  gv+ ++  +++    +   +  sv++dA ++ ehak+k+v+  dv  A++ +
   KKY23833.1 180 RRGGVKRISAMIYEETRGVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 234
                  5566777777777777777888999***********************9998765 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.7e-05     0.037      33      70 ..     196     233 ..     176     236 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHHHHHHHHHHHTTSS-SS--HHHHHHHHHH CS
    Bromo_TP  33 teiaqkYirelgeqaksfaehagRseptlkDvvltLqe 70 
                 +++++++++++ ++a  + eha R ++t  Dvv +L++
  KKY23833.1 196 RGVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKR 233
                 68999*******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1538.68
//
Query:       KKY23834.1  [L=1240]
Description: putative serine threonine protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-06   28.1   2.5    9.6e-06   25.6   2.5    2.1  1  HeLo      Prion-inhibition and propagation


Domain annotation for each model (and alignments):
>> HeLo  Prion-inhibition and propagation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   2.5   5.3e-10   9.6e-06      23     160 ..      31     188 ..      15     195 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 5.3e-10
                 EEEBGGGGGGHHHHHHHHHHHHHHHHHHHHHHTTT.....-SHH..........HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CGG............ CS
        HeLo  23 lsaarnlgkdyellrlkLdieqlRLlqWgeavgllspd..sdkrlddestr...ralvleileqiealleefeklqeryglklekqdass......... 107
                 ++ + ++  d + l+   +i++ RLl+Wg  +  +++    d ++dd+  +   ++ v+ i++ i++ll e+eklq      ++++++++         
  KKY23834.1  31 VTLQTEHNPDVASLQREYRIQKDRLLAWGLDWSDSDTAqfPDVQIDDSVDQagcSDVVAYIMSTIQDLLVESEKLQTSLRSPDVESTDHElpgsfslkd 129
                 666677788999********************987444886666774444457778*********************5555554443333566666666 PP

                 ..........G-B--GGGS-HHHHHHH.HHHHHHHHHS----S-----EEE-SHHHHHH CS
        HeLo 108 ......sslalssereksfraefellkrlmrkaakkrqkrtslpkrlrWaivdkkkfee 160
                       s+++ s+e++++ ra +e+l  +++   k  ++r+  +k  r ++v k++f +
  KKY23834.1 130 aqenapSTSTWSNEQLQKSRALLEELTACIDYLFKLSETRRAQRKGSREMSVSKESFIN 188
                 65555544444455555554444444444444444444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.49
# Mc/sec: 7637.03
//
Query:       KKY23835.1  [L=426]
Description: hypothetical protein UCRPC4_g02648 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     5e-110  367.7   1.2   5.7e-110  367.5   1.2    1.0  1  DUF1682       Protein of unknown function (DUF1682)
  ------ inclusion threshold ------
      0.092   12.4   0.0       0.23   11.1   0.0    1.6  1  PreAtp-grasp  Pre ATP-grasp domain


Domain annotation for each model (and alignments):
>> DUF1682  Protein of unknown function (DUF1682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.5   1.2  6.4e-114  5.7e-110       1     323 []      76     417 ..      76     417 .. 0.98

  Alignments for each domain:
  == domain 1  score: 367.5 bits;  conditional E-value: 6.4e-114
     DUF1682   1 nfklEilllvllllyvlnyfiGkrkNkkiAkkwaaahkpllesnFalvgfd...aekksslllkeseseftlyatGRrnvasllvtlkLlkRqdllsll 96 
                 +f++E++ll+++ll vl++++G+++Nk++A++w++ah+p+les++a+vgf+   +++++++l++++ +ef  yatGR n a+ +++l+L kR+++l++ 
  KKY23835.1  76 DFYTEMILLPFVLLAVLIHLWGTKTNKRKANAWINAHAPVLESEYAVVGFNkngDNPPENILKEKTAQEFIGYATGRANAAFTDIKLQLHKRYNPLMFA 174
                 7**************************************************999999****************************************** PP

     DUF1682  97 lelvlslffesvaapkDrveievyledgk..............amdgfVfavvkKkemkklrkdrydlesltktkdnsklpeelvvmsEsaevteallt 181
                 +e+ +s ff+s+a+p +r  +e y++dgk              ++d fV+avv+K++m++lr++ryd+ slt+tk+++klp +l+vmsEsae+t+++lt
  KKY23835.1 175 VEWGFSQFFDSFAPPAERAMVETYVFDGKekeyvpgsnpkgnsTYDAFVWAVVNKSNMRRLRNERYDV-SLTQTKEHAKLPGWLTVMSESAEITDTMLT 272
                 ********************************************************************.****************************** PP

     DUF1682 182 pellkalnkagklleyliitDqpskkpetke..serkrlilslrlpssss.dleelspllklvlrliDklakraklrpevlkklkktReevekklkkea 277
                 pel++al+ ag++leylii+Dqp++kp++ +  +++krl lslrl s+s+ +  ++ pl++++lrl+D l+++a++rpev +k+k+tRe +++klkk +
  KKY23835.1 273 PELCSALEAAGDSLEYLIISDQPIDKPTKLDetAPKKRLLLSLRLESTSAkHPPTTLPLFSAFLRLPDFLVTTAHFRPEVSRKVKQTREIEQAKLKKIS 371
                 *****************************6667899*********988645999*****************89************************** PP

     DUF1682 278 eeekaEeaqekkeeekkkereeklaklspeeqrKyeekerkkeakK 323
                 ++e +Ee++ + e+ kk+ere+kl+++++eeqrK+++ke+++++kK
  KKY23835.1 372 DAEAEEERKLAAEKLKKEERERKLRGMTAEEQRKFLDKENQRSKKK 417
                 ********************************************98 PP

>> PreAtp-grasp  Pre ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.5e-05      0.23      38     105 ..     337     403 ..     331     407 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.5e-05
  PreAtp-grasp  38 rdGDvlvlpvapeeeFlrYvtaltgvdreslrvlvppagrlgsdlLsperlldpelverlraavaerp 105
                   r  D lv+ ++ ++e  r v ++ ++++++l+ +   a++++++ L++e l+++e  ++lr ++ae++
    KKY23835.1 337 RLPDFLVTTAHFRPEVSRKVKQTREIEQAKLKKI-SDAEAEEERKLAAEKLKKEERERKLRGMTAEEQ 403
                   55699*****************************.99************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1888  (0.105304); expected 358.6 (0.02)
Passed bias filter:                      766  (0.0427241); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 2791.75
//
Query:       KKY23836.1  [L=1195]
Description: putative haspin protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-35  120.9   0.0    9.9e-35  120.2   0.0    1.4  1  Haspin_kinase  Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.2   0.0   5.5e-39   9.9e-35      25     326 ..     750    1135 ..     727    1161 .. 0.78

  Alignments for each domain:
  == domain 1  score: 120.2 bits;  conditional E-value: 5.5e-39
  Haspin_kinase   25 hssLqkf...................sssssessssnkislPvkdqvsrdkikkklrnsesllslnsqeevkdfdevilsqilelckikkilne 99  
                     ++ L ++                   +s+  +ss++++i lP ++q           +   l+++++q+ + +f++  + +i +  ++ k+ + 
     KKY23836.1  750 QTELMRLeeeldqlaisgsemsirghDSKRGSSSPAQTIDLPRSKQ-----------HLRPLVQESNQKRIDNFQDWGS-EIAQQYDVLKVAEG 831 
                     5555555555555555554333333333333344444444444444...........4455777777777777776543.44444444333433 PP

  Haspin_kinase  100 a..dlasllndseklssevyqtkekdkevvlKvipl...............evledvtiskelsl....kelkslklvkgtypglllllqdkvl 172 
                        ++ + ++     ss v+ ++      +lKvip+               +v ++v++ k++         + + +++g   +  l ++++  
     KKY23836.1  832 SygEVFKIIDRDGLPSSPVHSVRA-LGGCILKVIPInavtgagsrkfshakDVAKEVQMLKTMDAvhgfTRYRDVYVLEGRMHQSFLNAWKRWR 924 
                     333444444444444555666665.6679*****************************999988778888899999*****9999999999988 PP

  Haspin_kinase  173 kek...........pdfyseqqlflvlllkdkGtdLeevklkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdkn............ 243 
                      +            p +y+ +q+  v++++d+G+dLe++k  s+ q+  +fw+++ +L+ +E+  eFEHRdLh++ni  + +            
     KKY23836.1  925 SDPsndsqlpdpsdPSSYTGNQIWAVIEMDDAGKDLETLKTPSIYQIYDLFWSVTFSLAYGEQIAEFEHRDLHVGNICFRPQlpgglldidpvv 1018
                     776889**************************************************************************************** PP

  Haspin_kinase  244 ................lnvtlidlklsRlessegkvlytrlddpllFqGggD.....yqfeiYrlMrslls...........kswaefePrtNl 305 
                                        t+id++lsR+  +++++++t l  + l q +gD      q e  r M + +            ++w +f PrtN+
     KKY23836.1 1019 sekmddaletffglsnIRATIIDYTLSRAVINTDDTAWTALKSKSLLQAEGDtseekCQREAGRRMLRAVDaamegkpqstnTHWGNFVPRTNV 1112
                     **************99999*********************************99999999999999888888999******9************ PP

  Haspin_kinase  306 lwlhyLavkLlkkkn..kklnse 326 
                     +wl yL++ Ll ++     +ns+
     KKY23836.1 1113 VWLAYLLEVLLARTGstGLPNSS 1135
                     ***********999843223333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1046  (0.0583412); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.28s 00:00:01.16 Elapsed: 00:00:00.45
# Mc/sec: 7918.66
//
Query:       KKY23837.1  [L=268]
Description: hypothetical protein UCRPC4_g02650 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-15   54.8   0.0    1.7e-12   47.2   0.0    2.2  2  DUF4336   Domain of unknown function (DUF4336)


Domain annotation for each model (and alignments):
>> DUF4336  Domain of unknown function (DUF4336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   9.6e-17   1.7e-12      21     163 ..      28     162 ..      20     178 .. 0.81
   2 !    5.5   0.0   0.00046       8.3     280     303 ..     218     243 ..     207     260 .. 0.75

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 9.6e-17
     DUF4336  21 RmtvvkLekggLlvyaPvapTkellelvkeleaehgevkyivlptvalEHKvfvgpfarkfpkAevwvapgqwsfPlnlplellglpkkrtkvl.peds 118
                 R t+v+L++g+L v++Pva T+++ + +++      +v+yi   ++ +EH +++gp ++++p+Ae+ + p+    P +   +    + + ++v+ pe++
  KKY23837.1  28 RGTIVRLQSGSLAVFSPVALTPDVQARLQAYG---NKVRYIA--ATDIEHHIYLGPWSKAYPEAEL-IGPHG--LPEKREKDSATAGLNFKHVFtPENK 118
                 89**********************99988865...89***95..678******************9.56654..5655555444444455555437888 PP

     DUF4336 119 eevPwadeidvkiLgplelglgkfaevaffhkasktllvtDavvs 163
                 ++   + e+d +   +  +++++ +e +ffh+++ +l+ +D +++
  KKY23837.1 119 NTYRIGAEFDKEFSYE-YVHSHQNRELVFFHRPTGSLIQADLIFN 162
                 8888888888877644.4788899*****************9986 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.00046
     DUF4336 280 evlawvdkvakwk..feriipaHfda 303
                 + ++ v+k+ +wk  ++riip+H d 
  KKY23837.1 218 AFAESVKKMDTWKgeMKRIIPCHGDV 243
                 445556777799999********775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2182.01
//
Query:       KKY23838.1  [L=397]
Description: putative 2-oxoglutarate-dependent ethylene succinate-forming enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-18   67.2   0.0    3.8e-18   65.8   0.0    1.7  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
    1.2e-14   55.0   0.0      2e-14   54.4   0.0    1.3  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.0   4.2e-22   3.8e-18       1     101 []     214     335 ..     191     335 .. 0.81

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 4.2e-22
                   S--EEEEEEE-S------....---EEEEEESSSEEEEEEE-TT---E........EEE............TE.EEE----TTEEEEEE-HHHHHHT CS
  2OG-FeII_Oxy   1 teellvlnyypphpdpev....ilglgahtdaslltillqddvgglev........fkd............gk.wlrvppvdnslivniGdallfls 72 
                   +++l++l++ p    +        g+g htd++ll+i +qddvggl++        f +            ++ wl+vppv+++++v++Gd+++ ++
    KKY23838.1 214 WHHLRILRF-PANSRTNGkgkdGRGIGSHTDYGLLVIAAQDDVGGLFIrppienenF-SnwetttaglkeeDEgWLYVPPVPGVFTVFPGDMMQYIT 308
                   466666666.444222212333457***********************777655552.0577777888887668*********************** PP

                   TS-S----EEE----GTGSEEEEEEEE-- CS
  2OG-FeII_Oxy  73 ngryksvlHrVlpvnegerRvsiayfiep 101
                   + +++s++H+V   n+++ R++ ayf+ep
    KKY23838.1 309 GSYLPSTPHKVG-LNTQD-RFAFAYFHEP 335
                   ***********9.88877.*******997 PP

>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   2.2e-18     2e-14      13     117 ..      64     170 ..      53     171 .. 0.92

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 2.2e-18
      DIOX_N  13 edraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKeklakspsfrGysrlgeektdgkkldwkesfdlgtelpeddp...agkp 108
                 + ++a+ ++l +A r+ G++++  +  + ++++e+f+++++FF+ P +eK  +  s+++ Gy ++gee tdg  +d++e f + ++l+  ++   ++ p
  KKY23838.1  64 PGDRALGKALIDAWRRDGILQIQMQPEQIKVAEEAFQTSKTFFKKPSNEKASCVDSQNYSGYIASGEEVTDG-IKDYSEIFTVTKDLDLAERrvrSKWP 161
                 5678999****************************************************************9.*************9966655777888 PP

      DIOX_N 109 legpnqwPe 117
                 ++gp  wP+
  KKY23838.1 162 CHGPVPWPD 170
                 999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2435.25
//
Query:       KKY23839.1  [L=240]
Description: putative 1-acylglycerol-3-phosphate acyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-34  118.0   0.0    3.9e-34  117.2   0.0    1.4  1  Acyltransferase  Acyltransferase
  ------ inclusion threshold ------
       0.11   11.8   0.0       0.13   11.6   0.0    1.1  1  DUF1574          Protein of unknown function (DUF1574)


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2   0.0   4.4e-38   3.9e-34       4     133 ..      31     156 ..      29     158 .. 0.96

  Alignments for each domain:
  == domain 1  score: 117.2 bits;  conditional E-value: 4.4e-38
  Acyltransferase   4 vtglenlpekgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleegkl.vv 96 
                      v+g+e+l+  +pa+++ NHq++lDvl+l +++     p+ + + akk+l+++p+lg++m+l+g++f+dR  +++a ++ e +++ ++e k  v+
       KKY23839.1  31 VEGEEYLNGTRPAVIIGNHQTELDVLFLGVIF-----PKYCSVTAKKSLKNVPFLGWFMSLSGTVFLDRARREQALKAFEGAAREMKEHKQsVY 119
                      8999****************************.....9**********************************************88888888** PP

  Acyltransferase  97 iFPEGtrsregel..lpfkkGlvrlaakakkgvpivPva 133
                      iFPEGtrs + e   lpfkkG+++la++a  gvpi+Pv+
       KKY23839.1 120 IFPEGTRSYAKEPslLPFKKGAFHLAVQA--GVPIIPVV 156
                      **********88888**************..******98 PP

>> DUF1574  Protein of unknown function (DUF1574)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.4e-05      0.13     230     312 ..     115     226 ..      53     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.4e-05
     DUF1574 230 ekairtyneylrsfalsplqleflekilklakeknikvlliwpkvseplervlkklkl................................keswapkve 296
                 ++++ ++ e  rs+a +p+ l f + +++la + +++++   p vse++ + l+ ++l                                 +++ + ve
  KKY23839.1 115 KQSVYIFPEGTRSYAKEPSLLPFKKGAFHLAVQAGVPII---PVVSENYSKILNVKDLrfnpgqirvkvlppiptegltaadvdtltretRDKMLQTVE 210
                 5566777888899************************76...************999999999999999999999999999999999988888999999 PP

     DUF1574 297 klakdkgivvldlnkd 312
                  +a d+++  l   +d
  KKY23839.1 211 DMARDSESIALSTTQD 226
                 9999888888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1648.38
//
Query:       KKY23840.1  [L=570]
Description: putative amino acid transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-76  255.3  37.2      1e-75  255.0  37.2    1.0  1  Aa_trans  Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.0  37.2   5.6e-80     1e-75       2     406 ..     166     560 ..     165     563 .. 0.94

  Alignments for each domain:
  == domain 1  score: 255.0 bits;  conditional E-value: 5.6e-80
    Aa_trans   2 tssalsavlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlgyrllGpkgkliidlailvqlfGvgvs 100
                 +s+++ a++n++++i+GaG+++ PyA+kq+Gli G++ll+  +++  +t+ l+v  sk      +  s++ +++ ++G+ g ++i+la+  + fG +++
  KKY23840.1 166 KSNMRAAFMNMANSIIGAGIIGQPYALKQAGLITGVLLLIGLTFVVDWTIRLIVINSKL----SGTPSFQSTVEFCFGRPGLIAISLAQWAFAFGGMIA 260
                 689999***************************************************96....499********************************* PP

    Aa_trans 101 yliligdllpaifesffdt.........lllsnvyfilisaliiipLslipnlskLsylSllalvsslyyivilvlvvaelvklelkgvseetvkkask 190
                 ++++igd++p++f  +f +         l+ ++++++l +  i +pLsl ++++ Ls++S+lal+s+++ i+i+v+     v+++lkg  +e + ++s+
  KKY23840.1 261 FCVIIGDTIPQVFAALFPKlknmaflwlLTDRRAIIVLFVLGISWPLSLYRDIAMLSKASTLALLSMVI-IIITVITQGVSVPSDLKGPISESL-SISN 357
                 ****************97778899997555588888888899*************************98.788888888888999999888887.7777 PP

    Aa_trans 191 lkglflaigiivFAftghavlleiqnelkdpskfkkmtkvlllsiilatvlyilvGlvGYltFGnevkgnillnlpkssilivivnlllvlhlilsfpl 289
                   g+f+a+g+i FAf++h+++l i+++l++p     +  v++ls+ ++ ++++ ++l+G+ltFG+ +kgn+l+n+p+++i+ +i++++++l+++++ pl
  KKY23840.1 358 --GMFQAVGVISFAFVCHHNTLLIYTSLRTPTL-SRFSTVVHLSTFISLLFCLTMALTGFLTFGSLTKGNLLNNFPPTNIMVNIARFCFGLNMLTTLPL 453
                 ..*****************************99.7799************************************************************* PP

    Aa_trans 290 qlhplrqvvenllikkeavagasekeapkskllrlvirlllvvityliAlsvpslakvlslvGatsstplsfilPalfhlkliktekksleklvkkkil 388
                  ++++r+v+ n + ++         +a+k+ +++++i++ +v++++ ++l+++ l+ v++lvGats+  l++ilP+  +++l ++e ++++   kk + 
  KKY23840.1 454 ECFVCREVILNYFYPR---------KAHKI-TRHFFITTTMVFASVGVSLLTSDLGVVFELVGATSACALAYILPPACYIRLVGKETTTTKPSLKKLLP 542
                 *************876.........56655.99************************************************************999888 PP

    Aa_trans 389 dlicivlglllvfyglav 406
                 ++++i++g++++++++a+
  KKY23840.1 543 AYLTIIFGFAVMIVSVAM 560
                 99************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 4168.03
//
Query:       KKY23841.1  [L=588]
Description: putative fungal specific transcription [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-15   55.9   0.0    5.6e-15   55.1   0.0    1.6  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   3.1e-19   5.6e-15     112     233 ..      11     124 ..       1     229 [. 0.85

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 3.1e-19
  Fungal_trans 112 lherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlwesddaseetlvetkl 208
                   +++ ++   v++a+ + Lhr+++ +      +l++ ++e rrRl+w+++++D++      rp++++ds i+l LP +  +   +  + + ++ +   
    KKY23841.1  11 KAYTTLYNSVSMAYAMELHRESPTNA-----ELSPTDRELRRRLFWSCYIMDRFNNCGSKRPSIISDSTIRLKLPSYAPHAAAMPAEGKPFNDG--- 99 
                   6677777889**************99.....59*******************************************999999888888888888... PP

  Fungal_trans 209 sneeksrkiasfllaLkkilskiag 233
                    n ++s++++ ++     +l +i++
    KKY23841.1 100 PNLQFSHDPSRQEQGAITLLIDIVR 124
                   5666666666666555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.46
# Mc/sec: 3866.39
//
Query:       KKY23842.1  [L=678]
Description: putative pentafunctional arom [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.9e-47  160.8   0.0    8.4e-47  160.3   0.0    1.2  1  DHquinase_I  Type I 3-dehydroquinase


Domain annotation for each model (and alignments):
>> DHquinase_I  Type I 3-dehydroquinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.3   0.0   4.7e-51   8.4e-47       2     229 .]     164     395 ..     163     395 .. 0.92

  Alignments for each domain:
  == domain 1  score: 160.3 bits;  conditional E-value: 4.7e-51
                  EEE--SSHHHHHHHHHHHTTS-SEEEEEGGG-.TT.T.........HHHHHHHHHHHHHHTTS-EEEE---GGGT-S.SSS-HHHHHHHHHHHHHCT- CS
  DHquinase_I   2 vpitgktleeilaelesgkekaDlvElRlDllketse.........aedvseeleelrstsdlpliftlrtkaeggrfkrkseeeylellrtaielga 90 
                  ++ t ++++++l+ l  +  +aD+vElR+Dllke++          a  v +++  lrs ++l +ift r+k e+g f++++    l++l+ ai++g+
   KKY23842.1 164 ISTTFPDVRAALSNLDILSVGADAVELRVDLLKEPKAdgsftqipsAAFVGKQVMLLRSRTELSIIFTTRRKGENGAFPEDDPSLFLKYLELAIKWGV 261
                  567788888888888887558***********99987*********9************99************************************* PP

                  SEEEEEGG-.HHGHHHHHHHHHHHTT-EEEEEEEESS----HH..HHHHHHHHHHHTT-SEEEEEE--SSHHHHHHHHHHHHHHHHHT-SS-EEEEE- CS
  DHquinase_I  91 dyvDvElteapeeskkrlieekreggtkvIvSyhdfegtpsae..elkallekmqalgaDivKiavmaksieDvlrllsltseakeekdeaplIamam 186
                  +y+DvE + +pe+  k l +++  g+t++I  +hdf+g  s+   e  +++e+ +++  D+vK+ +mak+ +D+++l  ++s+++++++e +l a++m
   KKY23842.1 262 EYIDVEQF-LPESIRKYLWDHR--GNTRIISAFHDFSGNWSWTspEARHIFENGAKYS-DVVKMNCMAKNLDDNYQLEYFRSSIRASHPEPKLSAVNM 355
                  *******8.4433334666655..*******************999***********9.***************************9999******** PP

                  TTTTGHHHCHHHHHTB-EEEEESSS-..SSTT-EEHHHHHHHH CS
  DHquinase_I 187 GelGkiSRilgevfGspvtfasleeakasapGqltarelreil 229
                  G+ G++SR l++vf +p+t++ l     +apGql+a+e++++l
   KKY23842.1 356 GQVGQLSRTLNTVF-TPITHPLLPVI--AAPGQLSAAEINQAL 395
                  **************.*******7777..************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4683.94
//
Query:       KKY23843.1  [L=350]
Description: putative adenosine deaminase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2612.67
//
Query:       KKY23844.1  [L=293]
Description: putative mitochondrial carrier protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-33  113.0   8.7    3.5e-10   39.7   0.1    3.5  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.1   1.9e-14   3.5e-10       5      94 ..      18     100 ..      14     103 .. 0.91
   2 !   38.6   0.3   4.1e-14   7.4e-10      44      96 ..     144     199 ..     119     200 .. 0.84
   3 !   38.5   0.6   4.6e-14   8.3e-10       8      94 ..     211     290 ..     205     293 .] 0.86

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 1.9e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ++++ +a++ a a+++l+  P++ +Ktr+q+    +       +l++ + ++++eG rg++ G +p l+  + +++  f++y++ k  ++
  KKY23844.1  18 TYRTQFASAPAVALSVLAGSPFENLKTRMQSRHFAN-------ALECARYTLRTEGYRGFWAGSVPPLFYLTFTRVSGFSFYQKAKYAIN 100
                 667778899999******************988876.......79***************************************998776 PP

  == domain 2  score: 38.6 bits;  conditional E-value: 4.1e-14
                 SCSS...HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
   Mito_carr  44 ksaa...ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllkk 96 
                 k+a+   +++++ +i++  G++gly G+   llr ++ s+l+f++ye++k++++++
  KKY23844.1 144 KNAGrvnTFQAITQIVQRYGILGLYTGFHLHLLRETIGSGLYFGVYESTKQIMTTY 199
                 2222466********************************************99865 PP

  == domain 3  score: 38.5 bits;  conditional E-value: 4.6e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   8 ellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                  l+aGgl+g++a+l+t+Pld++Ktr q+    + ++    + +++    k    ++ ++G+ + +lr+ ++++++++++e++k+ ++
  KKY23844.1 211 VLVAGGLCGVGAWLFTYPLDTMKTRAQSVLIGNPTKA---AQSCVAAAAK----SSKFKGVEMMILRSCIQNMIQMSAFEYFKTKIN 290
                 689*************************888887644...5556666555....5678*************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2108.57
//
Query:       KKY23845.1  [L=446]
Description: putative nonspecific lipid-transfer protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-15   55.7   0.0    1.5e-14   54.0   0.0    1.9  2  Thiolase_N       Thiolase, N-terminal domain
    1.6e-12   47.1   0.7    1.6e-10   40.7   0.0    2.5  2  Thiolase_C       Thiolase, C-terminal domain
      1e-06   28.5   0.1    0.00036   20.3   0.0    3.2  3  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
     0.0017   18.0   0.0     0.0034   17.0   0.0    1.5  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
  ------ inclusion threshold ------
      0.029   13.1   0.1       0.12   11.1   0.1    1.8  2  SpoVAD           Stage V sporulation protein AD (SpoVAD)
       0.16   12.0   0.8         12    5.9   0.0    3.2  3  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   5.2e-18   1.5e-14      20     259 ..      10     216 ..       1     217 [. 0.88
   2 ?   -3.4   0.0       1.7     5e+03       6      22 ..     261     277 ..     255     287 .. 0.54

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 5.2e-18
                 TS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS CS
  Thiolase_N  20 dlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsna 118
                 ++ ++eL+ ea+ +++ +a++++++vd+ i   v      ++  + +  + g+  ++p   vn+ cs g ++++++   i  g+ad+v+++G E+m   
  KKY23845.1  10 KVDYTELGFEAGIKAMLDAEINYDDVDQGIACYVYGD---STCGQRVFYQFGM-TQIPIYNVNNNCSTGSTGLHMGRTLISHGAADCVLVVGFEKMNPG 104
                 67889***********************999999765...55566788999**.9*****************************************766 PP

                 -EEETCTTTTGGSSSSEEEEEHHHHH.HTEETT.TTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTTTBE-EEEEESSSEEEE-S-T CS
  Thiolase_N 119 ptaestdvrsglklgdekakdllipd.gladaf.neehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkdeivPvkvkgkkgkktvdkde 215
                 + +      +    +  + ++++i++ g+++a    +  G  ++++ +ky+++  + +e A  +h++++ ++ ++ F+                 + d+
  KKY23845.1 105 SLQSY---FDDRANPLGTTHGIMIETrGITNAPgAAQLFGNGGREYMEKYGATASDFAEIAHINHEHSQRNPYSQ-FQT--------------AYTLDQ 185
                 66655...5666677788899999888999986256789************************************.999..............45899* PP

                 TS-TT--HHHHHTS-BSSSTTSS-BTTSB--BEEEEEEEEEEEH CS
  Thiolase_N 216 airsevtaekLaklkpaFkkeGtvtAgnasqisDGaaavllmse 259
                  ++s++  ++L kl             ++++ sDG aa +l+s+
  KKY23845.1 186 ILSSPMIHDPLTKL-------------QCCPTSDGGAAAVLVSQ 216
                 **************.............9*********9999987 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.7
                 EEEE--EETTSTTTTS- CS
  Thiolase_N   6 aartpigkfggslkdls 22 
                 aart++ + g   +d++
  KKY23845.1 261 AARTAMSEAGVESSDIQ 277
                 44444444444444444 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   5.2e-14   1.6e-10      25      98 ..     259     352 ..     245     357 .. 0.93
   2 ?    4.3   0.2      0.01        30      71      91 ..     360     380 ..     353     392 .. 0.85

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 5.2e-14
                 HHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--G....................GGBSTT--HHHH-B-TTTHHHHHHHHHHHHHH CS
  Thiolase_C  25 ayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldl....................ekvNvnGGaialGHPlGasGaRivvtllselk 98 
                   a++ ++++ag++ +di++ E+++ F++  + ++ al+l +                      +N  GG i+ GHPlGa+G  +++ l+ +l+
  KKY23845.1 259 QHAARTAMSEAGVESSDIQICELHDCFSSNEMLTIDALGLSPhgkahhivrsgaitygpnskTIINPSGGLISKGHPLGATGIAQCAELVWHLR 352
                 468999******************************************************98889******************99999998775 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.01
                 TT--HHHH-B-TTTHHHHHHH CS
  Thiolase_C  71 vnGGaialGHPlGasGaRivv 91 
                 vnG  +al H lG  Ga +v+
  KKY23845.1 360 VNGTKVALQHNLGLGGAAVVT 380
                 89**************98875 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.2e-07   0.00036       2      38 ..      66     102 ..      65     108 .. 0.94
   2 ?    4.0   0.0     0.015        44      42      64 ..     194     216 ..     185     230 .. 0.65
   3 ?   -0.8   0.0      0.46   1.4e+03      39      76 ..     358     394 ..     354     398 .. 0.62

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.2e-07
                  EEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGG CS
  ACP_syn_III   2 DlnaaCsgfvyalsvAdaliesgaakrvLvigaetls 38 
                   +n++Cs+  ++l++ + li+ gaa +vLv+g e++ 
   KKY23845.1  66 NVNNNCSTGSTGLHMGRTLISHGAADCVLVVGFEKMN 102
                  689*****************************99985 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.015
                  -TTTHHHHTTB-EEEEEEEEEEE CS
  ACP_syn_III  42 DwkdrstavlfGDGAgAvvleas 64 
                  D+  + ++   +DG++A+vl  +
   KKY23845.1 194 DPLTKLQCCPTSDGGAAAVLVSQ 216
                  55556677777886666655443 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.46
                  GCS-TTTHHHHTTB-EEEEEEEEEEESSSSCEEEEEEE CS
  ACP_syn_III  39 kilDwkdrstavlfGDGAgAvvleaseeegarildsel 76 
                  ++++ ++ +   ++G G++Avv   +  +g + l++ l
   KKY23845.1 358 RFVNGTKVALQHNLGLGGAAVVTVYKRADG-KELKAPL 394
                  566666666777788888888766654444.3555555 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.2e-06    0.0034     151     208 ..      46     103 ..      12     121 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.2e-06
                    TTHHHHHHHHHHT--S.SEEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---SH CS
  ketoacyl-synt 151 anviagrisyalglrG.psvtvdtACsSslvavhaavqslrsgeadvalaGGvellltp 208
                     ++   r+ y++g++  p + v   Cs++ + +h+    + +g ad++l+ G e + +p
     KKY23845.1  46 DSTCGQRVFYQFGMTQiPIYNVNNNCSTGSTGLHMGRTLISHGAADCVLVVGFEKM-NP 103
                    566667888888886438899********************************955.44 PP

>> SpoVAD  Stage V sporulation protein AD (SpoVAD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1     4e-05      0.12      62     131 ..      24      96 ..      14     101 .. 0.70
   2 ?   -1.2   0.0      0.21   6.3e+02      52      75 ..     255     278 ..     241     285 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4e-05
                 HHHHTT--GGG-SEEEE....EE.SSGGGHHHHHHHHHH---EEEB--GGGHHHHHHHHHHHHHHTTS-SEEEEE CS
      SpoVAD  62 alkkanlkkedidflla....GD.LlnqlisssfaarelkiPflglygaCstsaeslalaallvdggfakrvlaa 131
                 a+  a+++ +d+d  +a    GD    q +  +f+    +iP + +   Cst + +l ++ +l+++g a+ vl++
  KKY23845.1  24 AMLDAEINYDDVDQGIAcyvyGDsTCGQRVFYQFG--MTQIPIYNVNNNCSTGSTGLHMGRTLISHGAADCVLVV 96 
                 55556666666654444111133123455544444..4689*****************************99975 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHHHTT--GGG-SE CS
      SpoVAD  52 sklleeavkkalkkanlkkedidf 75 
                  ++ ++a+++a+++a+++++di++
  KKY23845.1 255 YSMAQHAARTAMSEAGVESSDIQI 278
                 5799999************99986 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.72   2.2e+03      76     103 ..      69      96 ..      63      98 .. 0.84
   2 ?    5.9   0.0    0.0041        12      25      51 ..     257     283 ..     245     288 .. 0.89
   3 ?    2.4   0.1     0.052   1.5e+02      88     106 ..     333     351 ..     331     355 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.72
                      CTSEEE-THHHH-B-GGGHHHHHHHHHH CS
  Ketoacyl-synt_C  76 qplavgSvKsniGHleaAaGvaelikvv 103
                      +++  gS+   +G+++   G+a+++ vv
       KKY23845.1  69 NNCSTGSTGLHMGRTLISHGAADCVLVV 96 
                      46888999999**********9998876 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0041
                      HHHHHHHHHHHHHT--GGGEEEEE-SS CS
  Ketoacyl-synt_C  25 aqaraiekalaeagvdpedvdyveahg 51 
                       +++a + a++eagv+ +d+++ e h+
       KKY23845.1 257 MAQHAARTAMSEAGVESSDIQICELHD 283
                      57899*******************997 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.052
                      -B-GGGHHHHHHHHHHHHH CS
  Ketoacyl-synt_C  88 GHleaAaGvaelikvvlal 106
                      GH ++A G+a+++ +v  l
       KKY23845.1 333 GHPLGATGIAQCAELVWHL 351
                      9***********9998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.52
# Mc/sec: 2572.57
//
Query:       KKY23846.1  [L=161]
Description: hypothetical protein UCRPC4_g02659 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.038   14.3   0.3        2.4    8.5   0.0    2.2  2  PE        PE family
       0.17   11.6   0.0       0.22   11.2   0.0    1.1  1  LTV       Low temperature viability protein


Domain annotation for each model (and alignments):
>> PE  PE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.3    0.0084        75      61      88 ..      53      80 ..      51      85 .. 0.88
   2 ?    8.5   0.0   0.00027       2.4      45      81 ..     122     158 ..     120     161 .] 0.89

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0084
                HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          PE 61 eyqalsaqaaafheqfvqalaaaagsYa 88
                +yq+ saq + +++ + q+ +++ ++Y+
  KKY23846.1 53 TYQRRSAQQISQLTVALQMANTKLNAYS 80
                7999999999999999999999999997 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00027
                 SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          PE  45 DeVSaaiAalfsahaqeyqalsaqaaafheqfvqala 81 
                 +eV aaiA++++ ++ ++++++++a  f   + + l+
  KKY23846.1 122 EEVQAAIARTLGGQGLDVEKMNREARNFVGTVTKDLD 158
                 699***********************99988877665 PP

>> LTV  Low temperature viability protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.4e-05      0.22     274     302 ..      71      99 ..      48     107 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.4e-05
         LTV 274 GAltdfseySmtSSalaRteqltlLDdrF 302
                  A t+  +yS+t  a++R eql+  Dd +
  KKY23846.1  71 MANTKLNAYSITRNAVVRDEQLKGIDDEY 99 
                 58899**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1069.49
//
Query:       KKY23847.1  [L=629]
Description: putative carboxylesterase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.059   13.1   1.3       0.18   11.6   1.3    1.8  1  RMI1_N    RecQ mediated genome instability protein


Domain annotation for each model (and alignments):
>> RMI1_N  RecQ mediated genome instability protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.3   9.8e-06      0.18      83     145 ..     550     620 ..     493     622 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.8e-06
      RMI1_N  83 edigsSaysqlealeavergeetrgrevirt........esaaaasakadeenseekeeaqats......seskkrr 145
                 + +g+S++ q + + ++++++e++gre   +        e +++a++ka +e+ e+++     +      +++kk++
  KKY23847.1 550 VAVGKSTVTQADIISQRAKAKEIYGRERAMKedmdrtkrE-KEEAAKKARAEAAERGR-----QasrewaERQKKKA 620
                 569************************9988777655321.22222222222211111.....12234445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1420  (0.0792013); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4306.19
//
Query:       KKY23848.1  [L=158]
Description: putative dash complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-32  111.0   2.9      3e-32  111.0   2.9    1.4  2  DASH_Dad2       DASH complex subunit Dad2
  ------ inclusion threshold ------
      0.014   15.5   1.3      0.021   14.9   1.3    1.3  1  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
       0.11   12.8   0.6       0.11   12.8   0.6    2.0  2  Seryl_tRNA_N    Seryl-tRNA synthetase N-terminal domain
       0.27   11.0   4.7        7.9    6.3   2.7    2.6  2  DivIC           Septum formation initiator
       0.44   10.8   7.4       0.64   10.3   0.4    2.8  3  ABC_tran_CTD    ABC transporter C-terminal domain


Domain annotation for each model (and alignments):
>> DASH_Dad2  DASH complex subunit Dad2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.0   2.9   8.4e-36     3e-32       2      99 .]      39     135 ..      38     135 .. 0.90
   2 ?   -3.7   0.2       4.5   1.6e+04      80      80 ..     148     148 ..     138     156 .. 0.37

  Alignments for each domain:
  == domain 1  score: 111.0 bits;  conditional E-value: 8.4e-36
   DASH_Dad2   2 ariaeKraELeaLkqlrdlsdslakqleeLeeklstladgteavasVlanWqnvlraismaslkllqkaeeeaeeeeedeeeeeeeeplpetLVRIpv 99 
                 ari++K+aELe+Lkqlrdls++la+q+++Le kl+tl+dgteava+V+anW+ vl+ais+as+k ++ ae ++ + ++ ee++ +e +lp+tL+RIpv
  KKY23848.1  39 ARIESKKAELENLKQLRDLSGTLATQMSQLEAKLATLRDGTEAVATVMANWDHVLKAISLASVKTAKVAE-TNGSVAAREEDKAKEADLPATLIRIPV 135
                 89**************************************************************985555.5555556666667777*********97 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.5
   DASH_Dad2  80 d 80 
                 +
  KKY23848.1 148 Q 148
                 1 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   1.3   5.8e-06     0.021      38      94 ..      30      91 ..      19     127 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.8e-06
  CENP-F_leu_zip 38 enqekvilea..Etskaevetlkee...ieelaeelreleldLvalrsekeeLekelqkkqe 94
                    + q+++ l+a  E++kae+e+lk+      +la+++++le++L++lr   e ++  + ++ +
      KKY23848.1 30 STQQAAALQAriESKKAELENLKQLrdlSGTLATQMSQLEAKLATLRDGTEAVATVMANWDH 91
                    4555555554449*******98765111569****************998888776666655 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.6   2.9e-05      0.11      54     106 ..      36      88 ..      29      89 .. 0.91
   2 ?   -0.8   0.3      0.49   1.8e+03      91     105 ..     120     134 ..      97     154 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.9e-05
                   HHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCTS-- CS
  Seryl_tRNA_N  54 elskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaeleklllaiPN 106
                   +l++ I+++k++ e+ ++l++ + +l +++++lea+l++l++  e++++++ N
    KKY23848.1  36 ALQARIESKKAELENLKQLRDLSGTLATQMSQLEAKLATLRDGTEAVATVMAN 88 
                   67899******99****************************999999888777 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.49
                   HHHHHHHHHHHCTS- CS
  Seryl_tRNA_N  91 keleaeleklllaiP 105
                   k+ ea+l + l +iP
    KKY23848.1 120 KAKEADLPATLIRIP 134
                   333333333333333 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   2.7    0.0022       7.9      24      45 ..      32      53 ..      28      60 .. 0.55
   2 ?    4.1   0.0     0.011        41      24      47 ..      63      86 ..      58      96 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0022
                HHHHHHHHHHHHHHHHHHHHHH CS
       DivIC 24 qeiaalqaelaklkaeneeLea 45
                q+ aalqa ++++kae e+L++
  KKY23848.1 32 QQAAALQARIESKKAELENLKQ 53
                4555555555555555555554 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.011
                HHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC 24 qeiaalqaelaklkaeneeLeaev 47
                 ++ +l+a+la+l++  e+ +   
  KKY23848.1 63 TQMSQLEAKLATLRDGTEAVATVM 86
                567777777777777666666555 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.4   0.00018      0.64      30      60 ..      20      51 ..      15      53 .. 0.88
   2 ?    4.6   0.1     0.011        39      13      28 ..      61      76 ..      52     117 .. 0.75
   3 ?   -2.2   0.1       1.5   5.3e+03      43      50 ..     144     151 ..     132     156 .. 0.44

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
  ABC_tran_CTD 30 eladpelysdp.eklaelsaeleeleaeLeel 60
                   l +p+l s++ ++ a+l+a++e  +aeLe+l
    KKY23848.1 20 SLRQPSLGSHStQQAAALQARIESKKAELENL 51
                  57789999888899****************86 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.011
  ABC_tran_CTD 13 leaeIeaLEeeiaele 28
                  l  ++ +LE+++a+l 
    KKY23848.1 61 LATQMSQLEAKLATLR 76
                  5556666666666654 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.5
  ABC_tran_CTD  43 laelsael 50 
                    +++++e+
    KKY23848.1 144 ATQTQTEQ 151
                   22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1478  (0.0824363); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1015.48
//
Query:       KKY23849.1  [L=382]
Description: putative shugoshin c terminal domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-11   42.5   4.1    3.9e-11   42.5   4.1    2.9  3  Shugoshin_C  Shugoshin C terminus
  ------ inclusion threshold ------
       0.11   12.5   1.0       0.37   10.9   1.0    1.8  1  DUF1192      Protein of unknown function (DUF1192)


Domain annotation for each model (and alignments):
>> Shugoshin_C  Shugoshin C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.1   5.6         2   1.8e+04       2       7 ..      57      62 ..      56      64 .. 0.72
   2 ?   -2.5   0.1      0.54   4.8e+03       3       8 ..     143     148 ..     142     152 .. 0.67
   3 !   42.5   4.1   4.4e-15   3.9e-11       1      25 []     270     294 ..     270     294 .. 0.98

  Alignments for each domain:
  == domain 1  score: -6.1 bits;  conditional E-value: 2
  Shugoshin_C  2 RpsRra 7 
                 R++Rra
   KKY23849.1 57 RRKRRA 62
                 778887 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.54
  Shugoshin_C   3 psRrar 8  
                  p Rra 
   KKY23849.1 143 PLRRAL 148
                  889994 PP

  == domain 3  score: 42.5 bits;  conditional E-value: 4.4e-15
  Shugoshin_C   1 gRpsRrarkvvsYKEPSLnsKMRRP 25 
                  gR sRrar+ vsY+EP+L++KMRRP
   KKY23849.1 270 GRGSRRARPQVSYAEPNLRDKMRRP 294
                  89**********************9 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.0   4.1e-05      0.37      26      50 ..     165     189 ..     163     192 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.1e-05
     DUF1192  26 eerIalLeaEIaRleaaiakkkasr 50 
                  +rI++L++E+ ++ +a+++k++ r
  KKY23849.1 165 ADRISALKDEVTKTAQARERKRERR 189
                 58*******************9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1152  (0.0642534); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2780.71
//
Query:       KKY23850.1  [L=147]
Description: putative fmn binding [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-23   84.2   0.0    1.2e-23   84.0   0.0    1.1  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.0   6.6e-28   1.2e-23     139     244 ..      10     117 ..       3     133 .. 0.87

  Alignments for each domain:
  == domain 1  score: 84.0 bits;  conditional E-value: 6.6e-28
                   -EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TTT----STTSSSHHHHHHHHHHHHHHHHHHH-SSS.EEEEEECE--STTS CS
  Oxidored_FMN 139 kkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspksnkrtDeygGslenRarFllevvdaVkeavgeer.vgyRlSpedvvekg 234
                   +ke+t ++  + i ++v+ Ak a+eAgf gV+  ga G+Ll qFlsp++n+rtD ygGs e+R++Fl+  v +++e   + + ++ +l   d++e g
    KKY23850.1  10 PKEMTLNDTDDAIANWVRGAKVAKEAGFAGVQLQGAYGFLLSQFLSPHTNRRTDDYGGSPEKRMKFLRRFVTEIQEFCPSPFcLSEKLNSADYMEAG 106
                   69*************************************************************************9988777788888877777776 PP

                   --HHHH.HHHH CS
  Oxidored_FMN 235 ldfaet.aqki 244
                       e   +++
    KKY23850.1 107 GLTQEEaLEQV 117
                   65555534444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1018.28
//
Query:       KKY23851.1  [L=200]
Description: putative venom allergen ame: allergendol m [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-17   63.9   5.5    4.5e-17   63.1   5.5    1.5  1  CAP       Cysteine-rich secretory protein family


Domain annotation for each model (and alignments):
>> CAP  Cysteine-rich secretory protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   5.5   2.5e-21   4.5e-17       1     126 []      52     170 ..      52     170 .. 0.88

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 2.5e-21
                 HHHHHHHHHHTT----EE-HHHHHHHHHHHHHHHHH.T---S-GGG--HHHHHHTT-TEEEEEES--CCCHHHHHHTSHH.................HH CS
         CAP   1 leahNeyRaaaglppLkwdatLekaAqdhardcaashsdsssspeggdllkyaenagkeniaaaseaaedavdsWysepgtynkgketegs....ighf 95 
                 l+ahNeyRa +g + ++wdat ++ Aq++a++c        +   +g +++ + ++g      + +++e  v  Wy+e++ y+ + + + +    +ghf
  KKY23851.1  52 LNAHNEYRAIHGGASVTWDATKAQYAQNYAEQC--------TWAHSGGPYGENLAIG------GFDNPEYYVWMWYNEREAYTDYSSPDFNgfesWGHF 136
                 79*******************************........5555555666666666......78899************999887777779******* PP

                 HHHT-SS--EEEEEEEEBTTS-E.....EEEEEE CS
         CAP  96 tnllwpkstkvGcavatcgngsf...tfivvcny 126
                 t+++w+++ ++Gc+++t +++      +++vc+y
  KKY23851.1 137 TQTVWSSTASIGCGFVTTCDNLGdfgPYFLVCEY 170
                 ***************9988887789999****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1359.90
//
Query:       KKY23852.1  [L=397]
Description: putative diphosphomevalonate decarboxylase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-65  218.7   0.0    6.9e-65  218.3   0.0    1.2  1  MDD_C           Mevalonate 5-diphosphate decarboxylase C-term
    2.7e-09   37.1   0.8    6.2e-09   36.0   0.8    1.7  1  GHMP_kinases_N  GHMP kinases N terminal domain


Domain annotation for each model (and alignments):
>> MDD_C  Mevalonate 5-diphosphate decarboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.3   0.0   7.7e-69   6.9e-65       1     186 [.     202     384 ..     202     385 .. 0.92

  Alignments for each domain:
  == domain 1  score: 218.3 bits;  conditional E-value: 7.7e-69
       MDD_C   1 vlilvvsdekkkvsStsGmqrsvetSeLlkhrakevvperieelekAikekdFetfaeitmkdSnqlhavcldtyPpifYlndtSraiielvhelNeaa 99 
                 +++lvvs++kk+v+St+Gmq++v+tS+L+++rak+vvp+ ++++ekAi+ +dFe+fae+tm+dSn++ha+cld++Ppi+Y+nd+Sra ++lv+++N++a
  KKY23852.1 202 AIVLVVSAAKKDVGSTEGMQTTVKTSPLFSTRAKDVVPTAMANMEKAIRGRDFESFAEVTMRDSNSFHATCLDSWPPIQYMNDVSRAAVKLVENINAKA 300
                 58************************************************************************************************* PP

       MDD_C 100 gkikvAYtFDAGpNavlyleekdveellsllkklfppesdaeefvkgakveeaaelseelkaslalkeskgavkriiltkvgdGpkv 186
                 gk+ +AYtFDAGpNav+y++e++++ +  ++++l+  +  +e ++ + + e + +  ++l  ++a++++k+ v+r+i+t vg+Gp+ 
  KKY23852.1 301 GKLICAYTFDAGPNAVIYYLEESTDLVAGVFRSLLAGAVGWEGAYGE-TIEAS-ADVAQLD-AKAVSTIKEGVSRVICTGVGEGPEH 384
                 *************************************9988888644.44444.3444444.457778999**************86 PP

>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.8     7e-13   6.2e-09       1      66 []     113     171 ..     113     171 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 7e-13
                     EEEEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHSS CS
  GHMP_kinases_N   1 divikseiPvgaGLGSSAAlavalvaAllallglsleeaklaleaerlaqggngsggDvaasvyGg 66 
                     +iv+++++P++aGL+SSAA  +alv+A+++l+       +l +   +l   ++ + g ++ s++Gg
      KKY23852.1 113 RIVSENNFPTAAGLASSAAGFAALVRAIANLY-------QLPQSPTELSIIARQGSGSACRSLMGG 171
                     6899****************************.......677777777777888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2618.43
//
Query:       KKY23853.1  [L=836]
Description: putative cell morphogenesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-83  280.9   1.3    2.7e-83  280.9   1.3    2.4  2  SOG2      RAM signalling pathway protein
      5e-14   51.8   5.3    2.1e-06   27.4   0.6    3.3  4  LRR_8     Leucine rich repeat
    4.7e-10   39.6   1.6     0.0003   21.1   0.2    3.5  4  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
       0.11   13.1   1.9         76    4.5   0.1    4.4  4  LRR_1     Leucine Rich Repeat
       0.14   12.9   0.3       0.66   10.7   0.0    2.2  2  Plk4_PB2  Polo-like Kinase 4 Polo Box 2
       0.23   11.6   3.9    1.3e+02    3.0   0.1    4.8  4  LRR_6     Leucine Rich repeat


Domain annotation for each model (and alignments):
>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.7      0.99   2.9e+03     169     196 ..      18      45 ..       3      81 .. 0.44
   2 !  280.9   1.3   8.9e-87   2.7e-83       4     506 ..     288     732 ..     287     733 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.99
        SOG2 169 kkragrtksksisttssgssstlvssae 196
                  ++a++ +s+s  t+  +++ +++++  
  KKY23853.1  18 AQNASTAESQSAPTQPADQGPKPITEVL 45 
                 2222222222222222222222233322 PP

  == domain 2  score: 280.9 bits;  conditional E-value: 8.9e-87
        SOG2   4 RLSvLPeetiskavkvpllelVdaaRglLFalsqihqairqitsfvkeeria.vslerllysasshidnLieaLerfdslesrrgtpspsvdraviklC 101
                 RLS+ Pe++    v +pl+   ++a+g+L+a++q+h++++ +ts++k  +++ +s+e++ y as hid+L+e+Le++    ++++    s + a++++C
  KKY23853.1 288 RLSSVPEQKEDDMVHNPLV---EGAKGILYAIYQVHPQLSTLTSVAKSGDLRrNSIEIIWYTASAHIDQLNEVLENANIVYEDEEYRLDSIESAIKTAC 383
                 9*************99999...**********************************************************999999999********** PP

        SOG2 102 ktivsaFkkiisvLrknlkafvesdDvrYiRtllLmlygSmaEvrnawksiapeleavqplkptaskkkragrtksksisttssgssstlvssaesste 200
                 + ++  ++ ++ ++++++ ++++ +D rY+Rt +L+lygS++E+ na++s++++l+        +  + ++ +++++   t+ +++ +       ++++
  KKY23853.1 384 MRCIKSYTALCLQIQEYVPKIISRSDARYVRTTMLLLYGSIVEIKNACTSFGVDLQ-------HPVANLSIDNSSPP---TAVEQTLR-------APRP 465
                 *******************************************************3.......22223233333322...22222333.......3444 PP

        SOG2 201 srassvt.ytartRhagsfsaqdveqGaaltplrsdqipfnlsrsrrssssgnsaspaangaqsetsersasssgvqssasstPlgegstsppgalsrq 298
                  + +sv  + ar+R+ +  +                   +         + +++++  +n+a ++t++ ++s              +gst + g++ + 
  KKY23853.1 466 IQDQSVSrPGARQRSDTAIQ-------------------H--------PTLNTIITETQNMAAQQTPIFTQS------LN-----MTGSTVN-GTIHSG 525
                 44443333556668665443...................3........233456666667666666663333......23.....3355555.788888 PP

        SOG2 299 slsttgststltsssksrsssrsntnasastprslattpappasaesf..astlt.asrintlaavDeq........lletletavklalvvysqltee 386
                 +  ++++ + +t++++srs+sr++  + +s p+s + tp+   s+ +f  ++    +srintl++v e         ++ +l++a+++a + ++  ++ 
  KKY23853.1 526 ASLGPSAFTGTTLGNRSRSNSRAT--PISSVPSSVTGTPP---SVDTFlvPQPGVaPSRINTLTGVSEAeedrvfeeIFRALSRAYNAADQSLPITRRY 619
                 888888889999*******99996..55788888888888...******86666679********554455555666********************** PP

        SOG2 387 iskvaeassagqqrlteelakkirdLtdtcrqameltkaLrerLsllklkedlsekgsttsektklwedinaFlksivsilaliKelslmhelPnevrp 485
                 i++++e  +a ++r ++e++  +  Lt +c+++m+l++aL++rL ++k+k+     + + ++++++w ++++Fl+s+v+++ +++ +   + lP e + 
  KKY23853.1 620 ITRSLE--AANENRHPKEIRDMWSHLTYRCKACMDLSEALHSRLVNMKVKD-----PVAGRNQREFWALCKSFLQSFVNLVVEMRDAGGKQLLPAEAVY 711
                 ******..5689***********************************9999.....7789*************************************** PP

        SOG2 486 nLaslakatkevtvlLdlsSy 506
                  L++++ka+++++ l+d+s++
  KKY23853.1 712 VLRPVQKACRDAGKLIDASPW 732
                 ********************9 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     6e-07    0.0018      27      61 .]     107     140 ..     105     140 .. 0.93
   2 !   24.7   0.1   4.7e-09   1.4e-05      20      60 ..     146     185 ..     141     186 .. 0.93
   3 !   27.4   0.6     7e-10   2.1e-06       2      61 .]     152     209 ..     151     209 .. 0.96
   4 ?   -2.6   0.0       1.6   4.7e+03      31      51 ..     334     354 ..     334     356 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 6e-07
                 --EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8  27 LkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 ++ L+Ls+N++ ++ p  f+ +++Lr+L+++ N++
  KKY23853.1 107 VERLSLSHNQIWHI-PYRFEECAQLRYLNIRTNNF 140
                 689***********.9***************9985 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 4.7e-09
                 SSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS- CS
       LRR_8  20 aFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNr 60 
                 a ++l+ L++Ld+s+N+l+++ p+ +++L+sLr   L +Nr
  KKY23853.1 146 AVYKLPLLEILDISRNKLRRV-PEEIRQLTSLRVFSLMHNR 185
                 66789****************.9*****************8 PP

  == domain 3  score: 27.4 bits;  conditional E-value: 7e-10
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                  L++Ld+s+N+l  ++ e  + l++L+v++L +N+ + l p ++ ++++L+ L +  N+L
  KKY23853.1 152 LLEILDISRNKLRRVPEEIRQ-LTSLRVFSLMHNRVDDL-PTSLCDMNKLQILKVAENPL 209
                 699***************999.*****************.9**************99987 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 1.6
                 E--SS---GGGGGGGTT--S- CS
       LRR_8  31 dLsnNllttlspgafsgLpsL 51 
                 dL++N+++ +   a ++  +L
  KKY23853.1 334 DLRRNSIEIIWYTASAHIDQL 354
                 799999999977777777666 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   9.8e-06     0.029       3      35 ..     107     140 ..     105     150 .. 0.87
   2 !   12.8   0.3     4e-05      0.12       3      39 ..     130     166 ..     129     172 .. 0.82
   3 !   21.1   0.2     1e-07    0.0003       3      40 ..     153     190 ..     151     194 .. 0.86
   4 !   13.9   0.1   1.9e-05     0.057       1      36 [.     174     209 ..     174     212 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 9.8e-06
                 --EEE--SS---E-S-.HHH-TT--EEE-.-S-- CS
       LRR_4   3 LevLdLsnNqltdipl.leklpnLkeLdLsgNnl 35 
                  e L+Ls+Nq+  ip  +e + +L++L++  Nn+
  KKY23853.1 107 VERLSLSHNQIWHIPYrFEECAQLRYLNIRTNNF 140
                 589*************9999*********55643 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4e-05
                 --EEE--SS---E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4   3 LevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdl 39 
                 L++L+++ N+ +++p   +klp L+ Ld+s+N +++++
  KKY23853.1 130 LRYLNIRTNNFREFPRaVYKLPLLEILDISRN-KLRRV 166
                 99*****66****7774448*********999.87766 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 1e-07
                 --EEE--SS---E-S-.HHH-TT--EEE-.-S-----GG CS
       LRR_4   3 LevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdld 40 
                 Le+Ld+s N+l+ +p  +++l++L++++L +N +++dl+
  KKY23853.1 153 LEILDISRNKLRRVPEeIRQLTSLRVFSLMHN-RVDDLP 190
                 9***************8889*********777.777764 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 1.9e-05
                 SS--EEE--SS---E-S-.HHH-TT--EEE-.-S--- CS
       LRR_4   1 pnLevLdLsnNqltdipl.leklpnLkeLdLsgNnli 36 
                 ++L+v +L +N++ d+p  l  + +L+ L + +N ++
  KKY23853.1 174 TSLRVFSLMHNRVDDLPTsLCDMNKLQILKVAEN-PL 209
                 79****************7667*********888.44 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.41   1.2e+03       3      15 ..     108     120 ..     107     127 .. 0.79
   2 ?    3.5   0.0     0.053   1.6e+02       1      18 [.     129     145 ..     129     150 .. 0.73
   3 ?    4.5   0.1     0.026        76       2      17 ..     153     167 ..     153     190 .. 0.83
   4 ?   -3.3   0.0         6   1.8e+04       1      12 [.     198     209 ..     198     214 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.41
       LRR_1   3 rhLdLsnnpllgl 15 
                 ++L Ls+n++ ++
  KKY23853.1 108 ERLSLSHNQIWHI 120
                 79******99554 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.053
       LRR_1   1 nLrhLdLsnnpllglppn 18 
                 +Lr+L+++ n++ +  p+
  KKY23853.1 129 QLRYLNIRTNNF-REFPR 145
                 59*****77777.55665 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.026
       LRR_1   2 LrhLdLsnnpllglpp 17 
                 L+ Ld+s+n l +  p
  KKY23853.1 153 LEILDISRNKL-RRVP 167
                 89********9.4444 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 6
       LRR_1   1 nLrhLdLsnnpl 12 
                 +L+ L +  npl
  KKY23853.1 198 KLQILKVAENPL 209
                 799999999998 PP

>> Plk4_PB2  Polo-like Kinase 4 Polo Box 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       2.3   6.9e+03      58      89 ..     369     401 ..     337     411 .. 0.54
   2 ?   10.7   0.0   0.00022      0.66      22      91 ..     592     659 ..     587     670 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.3
    Plk4_PB2  58 eeeleslsselkk.llehaeeclkqclklesal 89 
                 e +l+s++s++k  +++ +++    cl++++ +
  KKY23853.1 369 EYRLDSIESAIKTaCMRCIKSYTALCLQIQEYV 401
                 334455555555413444455555666666655 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00022
    Plk4_PB2  22 eadfeasFydgakvtkssgekvkiieksgksltleseeeleslsselkkllehaeeclkqclklesalss 91 
                 +  fe +F   ++  +  ++++ i+ +   + +le++ ++++ ++e++++++h+    k c++l++al+s
  KKY23853.1 592 DRVFEEIFRALSRAYNAADQSLPITRRYI-TRSLEAA-NENRHPKEIRDMWSHLTYRCKACMDLSEALHS 659
                 55688888888888888887888888873.4444444.56999**********************99976 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.062   1.8e+02       6      15 ..     108     117 ..     107     117 .. 0.89
   2 ?    0.5   0.0      0.28   8.3e+02       2      15 ..     127     140 ..     126     141 .. 0.83
   3 ?    3.0   0.1     0.044   1.3e+02       4      15 ..     152     163 ..     149     164 .. 0.85
   4 ?    2.2   0.1     0.081   2.4e+02       3      17 ..     174     188 ..     172     189 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.062
       LRR_6   6 teLdLsgNdI 15 
                 + L+Ls+N+I
  KKY23853.1 108 ERLSLSHNQI 117
                 68*******8 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.28
       LRR_6   2 nthLteLdLsgNdI 15 
                 +  L++L+++ N++
  KKY23853.1 127 CAQLRYLNIRTNNF 140
                 5679******9986 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.044
       LRR_6   4 hLteLdLsgNdI 15 
                  L+ Ld+s N++
  KKY23853.1 152 LLEILDISRNKL 163
                 599*******97 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.081
       LRR_6   3 thLteLdLsgNdIgD 17 
                 t+L+  +L++N ++D
  KKY23853.1 174 TSLRVFSLMHNRVDD 188
                 89**********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (836 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.49
# Mc/sec: 5182.90
//
Query:       KKY23854.1  [L=242]
Description: hypothetical protein UCRPC4_g02667 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0012   19.0   0.0     0.0025   18.0   0.0    1.7  1  Myb_DNA-bind_6  Myb-like DNA-binding domain
  ------ inclusion threshold ------
       0.19   11.4   0.7       0.31   10.7   0.7    1.3  1  InPase          Inorganic Pyrophosphatase


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.8e-07    0.0025       2      44 ..      89     130 ..      88     168 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.8e-07
  Myb_DNA-bind_6   2 teeEdeiLlklvekyg.ndWknIaealnrRtpkqcfdrwknkLr 44 
                     t+eE+ +L +l      + Wk+I e+++ ++p+++++++k+ L+
      KKY23854.1  89 TAEETVKLNELKASKPiKTWKQIGEIMS-HDPESLKNYFKE-LK 130
                     899*****99999996489*********.************.84 PP

>> InPase  Inorganic Pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.7   3.4e-05      0.31     115     164 ..     106     155 ..      91     165 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.4e-05
      InPase 115 kgwkglgsitevsleelkkWlksgdkkkplaekklekkeekaeaeakkek 164
                 k wk++g+i++ + e lk++ k+ +k++pla++++ +++e+ + ++++++
  KKY23854.1 106 KTWKQIGEIMSHDPESLKNYFKELKKTNPLAATAAPTTTETPNPATTSKA 155
                 68****************************99999888777665555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1234  (0.068827); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.33s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 1506.52
//
Query:       KKY23855.1  [L=945]
Description: putative iq calmodulin-binding motif domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-74  249.6   0.0    6.4e-74  249.6   0.0    2.3  2  Tcp11     T-complex protein 11
  ------ inclusion threshold ------
       0.12   12.2   1.6       0.38   10.7   1.6    2.0  1  IQ        IQ calmodulin-binding motif
       0.98    9.3   7.2        0.2   11.5   1.6    2.5  2  RD3       RD3 protein


Domain annotation for each model (and alignments):
>> Tcp11  T-complex protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   3.7      0.13   7.8e+02     322     401 ..      73     152 ..      23     230 .. 0.51
   2 !  249.6   0.0   1.1e-77   6.4e-74       2     441 ..     510     942 ..     509     943 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.13
       Tcp11 322 esialeiarevskslkessalpdempeaakawLskqlqkvl....sksdpvfkllesrvrkalearllassasekvretstase 401
                 +++a+++ r  s  ++ ++ l+d+  +a k +L++ l k +    s +d  + l  ++ r++l+a ++a  ++e+vr +++  e
  KKY23855.1  73 NHVAQHLRRM-SIIESRKARLADRAAHAEKVRLRAALAKAAprgtSRED--RALAAQAAREKLLAEITA-RCEEEVRRAKRVAE 152
                 2333333332.33333444444444444455555555554455433333..666777777777777777.22222222222222 PP

  == domain 2  score: 249.6 bits;  conditional E-value: 1.1e-77
       Tcp11   2 rheilfDpelqfrpnldgeegrvketmakayWdaleeele..kdppdysrllallkelrdiLlslv..pnslrqeieevLDldlleqqlekgvldlekl 96 
                  heil++  +++++      ++ +++  + +   ++e+le   d     ++ ++++ +r++Ll+lv     l++ i++ LD+ l+ q +++g++++e++
  KKY23855.1 510 SHEILVNGFFEVQQ---RPWTESRKAFSDSLRTGMRETLEqgGDLAASGWIGSMATLIRERLLNLVtqRHPLYERIDNFLDTTLIDQTCRAGMFSYESF 605
                 6************8...99*********************774456679*****************877889*************************** PP

       Tcp11  97 aewlanllkklCAPmRDeevdkmvekiseaseessvdklVegLrelfeiLelMklDvaNhqirllrplLietaveyErkkFqerlesgkislestrkWl 195
                 +e ++n+++++C+P RD++v+++ ++ +        ++ +++L +l +iL+lM+lD+ N+  r+++p  +e+ +e Er+ F++ +++g+i le+tr ++
  KKY23855.1 606 FETIGNIIAQICSPGRDDAVNAFLKDRN--------SDHIDRLFNLVDILDLMSLDHINYAFRMAAPTVLEHGLEHERAVFESEVSEGRIPLEKTRTFW 696
                 ************************9988........889************************************************************ PP

       Tcp11 196 rkarekleaesserdpesssssssassspspskvliqglldllsssadpsseeefPetLalDhaRLrelradlrqlvvlasclllfkqlvkrdvsssvs 294
                 +++r++l++e + rd+ ++          s   ++++gl+dl++ + +p ++e +PetL+lD +RL +lra + +++++as+ll++k  ++r++     
  KKY23855.1 697 QRSRSALLDEGRARDSLAAGP--------SGPAIYMKGLTDLILAN-QPLEDELIPETLQLDGQRLSKLRATAYKMAAVASILLTTKIRLRRNR----- 781
                 *******99999998877642........3368************8.6888888*********************************9999998..... PP

       Tcp11 295 rsslkklkeeilalledeesesgerwtesialeiare..............vskslkessalpdempeaakawLskqlqkvl................. 362
                 +  +++ +++i+al   ++++++    ++++  i ++              v                          ++vl                 
  KKY23855.1 782 EVRWSADADRIMALDFADPKTHP----QRVVSIIESShlmpdatrdgllsfV--------------------------NRVLppaiaaarraedpashl 850
                 789***************98777....5553322222123334444555552..........................333333333333333333333 PP

       Tcp11 363 .............sksdpvfkllesrvrkalearllassasekvretstasekllpaGlsefveeveelaerlaklvsvhwrvfgplYeeil 441
                              ++++p+  +l +++++++ arl+a s+ e+vr t++a e+l+ aG++efv+ev ++++ l+++  v+ ++++ +Y++++
  KKY23855.1 851 psdtqsstteptaTFTEPLALHLLRSLQSHIHARLSATSTAERVRVTTSAAETLARAGMPEFVAEVGKVVDILERVKRVDLAAHSVWYDQVA 942
                 333333334444488**********************9888***********************************************9985 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.6   6.3e-05      0.38       1      17 [.     214     230 ..     214     234 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.3e-05
                 HHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaR 17 
                 ++aa +IQ++w++y a 
  KKY23855.1 214 TAAAKIIQRHWKAYNAV 230
                 579***********985 PP

>> RD3  RD3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.5      0.23   1.4e+03      18      53 ..     123     158 ..     111     162 .. 0.75
   2 ?   11.5   1.6   3.3e-05       0.2      39     103 ..     161     228 ..     157     235 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.23
         RD3  18 tpselvvdtlllElewqvkeaereqrekeeeerkae 53 
                   +++  + ll E+++  +e  r+++  +ee++ ++
  KKY23855.1 123 LAAQAAREKLLAEITARCEEEVRRAKRVAEENKEKK 158
                 445777788999999999999999888888888776 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 3.3e-05
         RD3  39 ereqrekeeeerk...aetgvDYswlastprkrkqisaserleLEelCakikPsecgkvisrfrevla 103
                 e  +  +e e +    a+++++Y+  + +pr  +    +e++ +  +C++++   ++k+i+r +++ +
  KKY23855.1 161 ELIRLREEMEGKLaeaAKRRLEYQQSIRRPRTASLPRVEEKKAVKPMCTQLSHTAAAKIIQRHWKAYN 228
                 45555555555541115677**********8766666788999*******************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (945 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1153  (0.0643092); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.46
# Mc/sec: 6171.85
//
Query:       KKY23856.1  [L=736]
Description: putative c6 zinc finger domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-19   70.9  14.2    1.6e-19   70.9  14.2    2.4  2  Mac_assoc  Unstructured region on maltose acetyltransferase
    8.4e-12   44.3   3.2    1.9e-05   24.2   0.1    3.6  3  Hexapep    Bacterial transferase hexapeptide (six repeats)
    5.6e-09   35.6   4.3    3.6e-05   23.4   0.1    2.6  2  Hexapep_2  Hexapeptide repeat of succinyl-transferase
    6.2e-09   35.8   9.7    1.1e-08   35.0   9.7    1.5  1  Zn_clus    Fungal Zn(2)-Cys(6) binuclear cluster domain
    1.7e-07   31.3   0.3    3.3e-07   30.4   0.3    1.4  1  Mac        Maltose acetyltransferase


Domain annotation for each model (and alignments):
>> Mac_assoc  Unstructured region on maltose acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   6.2      0.67   2.4e+03      11     101 ..      67     153 ..      57     177 .. 0.63
   2 !   70.9  14.2   4.3e-23   1.6e-19       1     149 [.     327     479 ..     327     502 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.67
   Mac_assoc  11 LqsKegYsevgsqYlqevspqhdrqqs.laeqvdagK.vRpivvddndraaaqyitsptgvsssrgsWskrsWsgtghtaylpdevakpdyRe 101
                     + Y+    +Y ++ s q+++ +s + + v++ K  R+++ dd + ++++ +  p+   + ++ + ++ + +  ++ ++++ ++  d Re
  KKY23856.1  67 SRQENSYA----EYRDNASDQQQQLPSpTETSVNSMKrKRSMSEDDRQTPSPSQVHRPATAEGRQEQYGRQEYVQ--QPVHATQVPPPDDLRE 153
                 44444444....467777777554444366666666526888878888888888888888778778887777766..3333444445555555 PP

  == domain 2  score: 70.9 bits;  conditional E-value: 4.3e-23
   Mac_assoc   1 kPsssktPvPLqsKegYsevg..sqYlqevspqhdrqqslaeqvdagKv.RpivvddndraaaqyitsptgvsssrgsWskrsWsgtghtaylpdevak 96 
                 kP ++k P+PLqsK+gYse    s+Y +e  + h +q++ ++ v +++v Rp+v + ++   a y+ sp++  +++++    +W++++h+++ +d ++k
  KKY23856.1 327 KPNQPKVPIPLQSKDGYSEPHqdSTYPPEPQSAHPSQPPISSLVHGNQVpRPLVQESHEPLRAGYMPSPAS--ANSTTQPTYTWPSNAHPTFHSDRPTK 423
                 9*****************986225799999999******99999988766****99999999*******99..677778899***************** PP

   Mac_assoc  97 pdyRevpsihelsreeksKsdykvvpsirelsha...sshpKpglplfqggi.dqrp 149
                 p++R+ p++h+ +r+e ++ dy  vp+i e+s++   +sh+ +++   + +  d r+
  KKY23856.1 424 PEFRDLPPLHNPTRTEGPR-DYGNVPPISEMSRGphsASHTASSMQWTNPSPsDART 479
                 ***************9996.9***********8544467777777655544434444 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   8.1e-05      0.29      18      34 ..     621     637 ..     616     639 .. 0.84
   2 !    7.8   0.1   0.00077       2.8       2      17 ..     643     658 ..     642     659 .. 0.87
   3 !   24.2   0.1   5.2e-09   1.9e-05       1      35 [.     680     714 ..     680     715 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.1e-05
                 TTEEE-TTEEEETTEEE CS
     Hexapep  18 gnVkIGdnvkIgagvvi 34 
                  n++IG++++Ig+++ i
  KKY23856.1 621 YNITIGEDAYIGENCFI 637
                 58999999999999988 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00077
                 EEEETTEEE-TTEEEE CS
     Hexapep   2 tvIGsnvlIgpfavig 17 
                 ++IG +++Ig++++i+
  KKY23856.1 643 VTIGAKTWIGSNVTIL 658
                 6899******999985 PP

  == domain 3  score: 24.2 bits;  conditional E-value: 5.2e-09
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 +++I+++v+Ig++++i+++V + +++ +++g+ ++
  KKY23856.1 680 GVIIEEDVYIGAGSTIYPGVRLQRGAFVEPGSIVK 714
                 589*****************************986 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   1.1   2.4e-05     0.087       1      32 [.     622     657 ..     622     659 .. 0.90
   2 !   23.4   0.1     1e-08   3.6e-05       2      32 ..     681     713 ..     680     714 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.4e-05
                 .EEE-TT-EE-TT-EE....SEEE-TT-EE-TT-EE CS
   Hexapep_2   1 pviIGdnCliGanagi....GvslGdncvvgaGvvi 32 
                 +++IG++  iG n+ i     v++G +  +g++v+i
  KKY23856.1 622 NITIGEDAYIGENCFIldacAVTIGAKTWIGSNVTI 657
                 589************996556*************98 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 1e-08
                 EEE-TT-EE-TT-EE..SEEE-TT-EE-TT-EE CS
   Hexapep_2   2 viIGdnCliGanagi..GvslGdncvvgaGvvi 32 
                 viI++++ iGa ++i  Gv l +++ v++G+++
  KKY23856.1 681 VIIEEDVYIGAGSTIypGVRLQRGAFVEPGSIV 713
                 9*****************************987 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   9.7   3.2e-12   1.1e-08       1      39 [.     287     325 ..     287     326 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 3.2e-12
                 SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus   1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39 
                 ++C +Cr++K KCd+ +P C+nC + +++C+ ys ++ +
  KKY23856.1 287 TGCMTCRRRKKKCDEAHPFCQNCSRGGFKCEGYSSRTPW 325
                 58*******************************999877 PP

>> Mac  Maltose acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.3   9.3e-11   3.3e-07       1      50 [.     528     580 ..     528     583 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 9.3e-11
                 HHHTTS-BETTTSHHHHHHHHHHHHHHHHHHTS..TTT...-HHHHHHHHHHHSS CS
         Mac   1 KMlaGelYdafsDpeLvaeRlrarelcrryNqt..rps...dkdeRrelLrellG 50 
                 KM +G l++ + D+ L++eR ++re+++r+N++  + +    + e+ +lL++ l+
  KKY23856.1 528 KMVRGRLFRFM-DALLQEERAKCREALWRLNNAgnP-QfgiSEREKIRLLKQVLC 580
                 9********97.8******************96542.345555555999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 4722.07
//
Query:       KKY23857.1  [L=803]
Description: putative n-carbamoylsarcosine amidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-35  123.3  11.2    1.9e-35  122.7  11.2    1.2  1  MIP           Major intrinsic protein
    7.3e-12   44.9   0.0    1.1e-11   44.3   0.0    1.2  1  Fungal_trans  Fungal specific transcription factor domain
  ------ inclusion threshold ------
       0.11   12.6   7.1       0.19   11.8   7.1    1.3  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.7  11.2   3.1e-39   1.9e-35      62     227 .]     604     764 ..     592     764 .. 0.93

  Alignments for each domain:
  == domain 1  score: 122.7 bits;  conditional E-value: 3.1e-39
                 HHHHHHCHT-S-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTSSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHCSTTS CS
         MIP  62 vylaagiSGaHlNPavTlallvarkisllrailYivaQllGaivaaallklltkglesraglfanslkpglsagqalvvEiiltfvLvlvvfaltddkr 160
                 v+l +g   a  N av l+++va++++ +r+++ + aQ+lG+i+aaal++ +  g  s++    ++l pg+s +q++++E++lt++L++v++ l+ +k+
  KKY23857.1 604 VFLQGGEASAFWNSAVVLGMCVAGSLPWIRGAFLVPAQILGGIIAAALVSCMLPGPISVN----TTLGPGVSIAQGVFIEMFLTAQLIFVILMLAAEKH 698
                 556666667889*******************************************75444....4567****************************999 PP

                 SSSTCHGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHTHST.TTTHHHHHHHHHHHHHHHHH CS
         MIP 161 kvslgelaplaigllvaliilvgipltGaamNpArslgpavvlnkfe.dhwvylvGPliGailgalvY 227
                 +++   +ap+ igl++++ +l+g+++tGa++NpArs+gp+v++ +f  +hw+y+vGP +Ga+l+al+Y
  KKY23857.1 699 RAT--FIAPIGIGLALFVSMLAGVYYTGASLNPARSFGPSVASASFPgYHWIYWVGPALGALLAALYY 764
                 988..89**************************************97479*****************9 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   1.9e-15   1.1e-11       5     264 ..     164     424 ..     161     427 .. 0.80

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 1.9e-15
  Fungal_trans   5 fsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLllle 101
                   f+  + q+++l k  f +       ++ ++ +pllll  l + a+f+++  k+   +    +     ++ r+  +     +  ++sl+ +q ++ll 
    KKY23857.1 164 FTS-YFQLGFLPKAMFIERL----QRDQRSINPLLLLGLLGITARFVPKLVKRYGGPVQATQ--IMIEHARKLVFE----EMYAPSLERIQGFFLLG 249
                   444.4467777776676666....67777788888888888888888888887655555433..333556666666....6667779********** PP

  Fungal_trans 102 lyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlwesdda 198
                   + e + +d+ +   h+g+avr+a  ++Lh++++y  +ks     + ++e  rR++w + + D +++  +  p  ++ ++i+ +LPcd+ d+ + +  
    KKY23857.1 250 VAEWGNGDKIQSSIHMGIAVRMAGIMRLHQEEAYDVSKSATADEVVNSEVARRTFWVIVSQDSLHSGAT-TPACFSLNDITALLPCDEADFAFGNIP 345
                   ************************************99966666666******************9766.45578********************** PP

  Fungal_trans 199 seetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlq.............seklswveeleraldn 264
                    e   ++     ++  r+ +++++ + ++ + +++ ++    +   ++++              +   +v+el++++d+
    KKY23857.1 346 KERAALSGTQAAKYDDRLAYLAIVMVLRLSNIVVRRIYLEDIMNAKTNQSddgappafwdqmsMDLFTNVLELHEQVDA 424
                   **99999999999999999999999999999999966666655555555588888888777777777777777777765 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   7.1   3.3e-05      0.19       2      30 ..      52      86 ..      51      91 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.3e-05
                S-HHHHHCT---ST..SSSS-HHHHHCT....HHH CS
     Zn_clus  2 aCdnCrkkKvKCda..kkPaCsnCkkln....leC 30
                aC +Cr+ ++KC     kP C+ C + +    +eC
  KKY23857.1 52 ACRRCRRLRSKCLHtnAKPPCGPCYEAGpqeaAEC 86
                9***********88885555****99887666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 5390.58
//
Query:       KKY23858.1  [L=445]
Description: putative homogentisate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     8e-135  449.8   0.1   9.1e-135  449.6   0.1    1.0  1  HgmA      homogentisate 1,2-dioxygenase


Domain annotation for each model (and alignments):
>> HgmA  homogentisate 1,2-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  449.6   0.1  5.1e-139  9.1e-135      36     422 ..       2     393 ..       1     397 [. 0.94

  Alignments for each domain:
  == domain 1  score: 449.6 bits;  conditional E-value: 5.1e-139
                 EEEESS-TTS-GGG--EEEEEESS-TT-S---EE--..-TB---...-CCCS----S-EEE-S----.TT----TTTTEEEEEEECECCCTEEEEEEEE CS
        HgmA  36 eqlsGtaftaprsenkrsWlyrirPsvahepfekleeaeeklva...elkeeasapnqlrWkPlelp.seekvdfveglltlagagdalsrtGlaihly 130
                 +ql Gt+f ++r  ++++W+yri+Psvah+p+e++ + +   ++   +  + + ap++l W+P++lp ++e+vdfv+g++t+ g gd+++++Gla+h+y
  KKY23858.1   2 QQLNGTSFVSSRGFQQHAWFYRILPSVAHRPLERIYSGNYFETNfapSNPKVQFAPKELAWDPFDLPdENESVDFVQGIRTIGGHGDPTTKEGLAVHIY 100
                 69*******************************9985543332211023344449************55689*************************** PP

                 EE-S---SEEEEESSEEEEEEEEES-EEEEETTEEEEE-TTEEEEE-TT--EEEE-S.SSEEEEEEEEES--EE----GGGTTS-BS-GGGEEEE---- CS
        HgmA 131 lanksmedkafynadGellivpqkGelelvtelGrlkvepgeiaviprGvrfkveledeearGyilevygakfklPdlGPiGanglanprdfkaPvaay 229
                 +an+sme++af+++dG++l++pq+G+l+++te+G+++v+pge+avi+ G+rfkv+l d+++rGyi e +ga+++lP+lG +G+ng a prdf++P+a +
  KKY23858.1 101 TANTSMEKRAFCSTDGDMLLLPQHGRLDIQTEMGKMMVRPGELAVIQAGLRFKVSLPDGPSRGYIQEIFGAHYELPELGVVGSNGCALPRDFEYPLAHF 199
                 *************************************************************************************************** PP

                 ---EEEEEEEEEEETTEEEEEEEEE-S--EEEEEES---EEEEGGG-B----SSSS---GGGGEEEEEE-SSTT-EEEEEEEE-SEEE--TTS--S--- CS
        HgmA 230 edkeskeltviskfqgklfaakldhspldvvaWhGnyvPykydlkkfnvinsvsfdhpdPsiftvltapsekeGvaivdfvifpPrWlvaektfrPPyy 328
                 + ++s + t++ k +g+lfa+++dh+p+dvvaWhGny+Pyky+l++f  +  v  d +dP+ + vlta+s+ +Gva  +f+if+P+W+ +++tfrPPyy
  KKY23858.1 200 DIDQS-PWTIVYKLCGELFACQQDHTPFDVVAWHGNYAPYKYQLERFINVAHVDRDQSDPTCYCVLTAKSKIPGVALTEFLIFTPKWIATQNTFRPPYY 297
                 98888.********************************************************************************************* PP

                 B--SSEEEEEEEE-----------TT-EEEE-TT--B---HHHHHHHHHS----EEEST.-EEEEEEESS--EE-HHH.HH--------------- CS
        HgmA 329 hrnvmsefmGlieGaydakeeGfvpgGaslhslmtahGPdaesfekaskaelkPekidd.tlafmfesslvlavtela.aelealdedylecWqgl 422
                 hrnv se mG+++G+++   + ++pgG s      +hG  +e f +a++ elkPe+i + t+afm+  + +l++t++a +++ +l+    ++W ++
  KKY23858.1 298 HRNVASEVMGMMYGEWKGTGHVLAPGGLSYEPSFLPHGESQERFLEAASWELKPERIMQnTMAFMMHINSHLSMTNFAlKDSGKLHLSPADMWDNV 393
                 *********************************************************888******************667778888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2817.47
//
Query:       KKY23859.1  [L=479]
Description: putative cytochrome p450 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-63  213.1   0.0    7.6e-63  212.9   0.0    1.0  1  p450      Cytochrome P450
  ------ inclusion threshold ------
      0.099   12.9   0.0         15    5.9   0.0    2.3  2  DUF4157   Domain of unknown function (DUF4157)


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.9   0.0   8.4e-67   7.6e-63       4     451 ..       6     450 ..       4     462 .. 0.83

  Alignments for each domain:
  == domain 1  score: 212.9 bits;  conditional E-value: 8.4e-67
                 ESEHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHH CS
        p450   4 ptplplvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfl 102
                 p+  p++g++  +  ++  ++++++ ++   +++ + + +kpvvvl++ ea++e+l kkg++f++rp+ ++++   + +  +  ++ ng++ + +R+++
  KKY23859.1   6 PPGEPFFGHFRVVPYSNPQFRYIEWGKEYNSDVLFFNVFGKPVVVLNSVEAAEELLEKKGANFQDRPRFVMFEV--MGWGVTLTFLRNGPRFRLHRKLI 102
                 5566**********98888886666666669******************************************8..78********************* PP

                 HHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTC CS
        p450 103 tptltsfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllky 200
                   t+t++ +  +++ + +ee+++ v+ + ++ ++        l+ k ++ ++ ++ Fg+r+   +de  + +++a+ +  +   ++   + ++fp++ y
  KKY23859.1 103 QSTFTQS-ACkTYRTVQTEEMRRAVRDILDRPSKW-----EMLIRKGTVAIVLRLGFGVRVHDDDDEYIKMADEANYAT-TQGGTPASTIGDHFPIITY 194
                 *******.433677777777777777777666655.....899*****************7733333333333333333.355688999********** PP

                 CSCHHHHHH..HHHHH...HHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHC..TTCTCT.SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 201 lptkllrkl..keavk...klkdlldklieerretldsakksrrdfldalllak..kekkge.sklsdeelaatvlellfaGvdTtsstlswaLyeLak 291
                 lp++l r +  k+a++   ++ ++++   +   ++++   + + +f++  l+    +   g+  + +  +++  ++ +++aG +Tt st++ ++++L+ 
  KKY23859.1 195 LPNWLARSAplKHARDwgwAIRKIHETAWNSTMKEIEAG-NAEPSFMKTYLERYnqSLATGQpCEHTPIDIQGAAGAIFIAGGNTTWSTIMVCILQLLL 292
                 *****9986113333322234444444455555555555.7899*******99976444444789********************************** PP

                 SHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB- CS
        p450 292 nPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFld 390
                 nP+v++k   Eid v+g++r pt++d  +lpyl++ i+Et+R+ p++p+++p++   +   +gy ip+G++v  n+ a+  d +v+  P +Fdp+R+  
  KKY23859.1 293 NPSVKAKAIAEIDAVIGSSRLPTFEDQDSLPYLNNLIQETFRIAPLSPVGVPHKSIAPDNYKGYYIPAGSIVYANARAMTLDSTVYASPSQFDPDRYTH 391
                 *************************************************************************************************98 PP

                 TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSC....S CS
        p450 391 ekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppileks....g 451
                  +      ++    FG+G+R+C+G+ lA   + +f+atlL + ++ +++ ++  p+ ++     g
  KKY23859.1 392 GE------PYPKGHFGFGRRACPGRYLAANSVYIFMATLLATTDFAFPKSEAGLPKARELglsnG 450
                 84......567777****************************99999777666666655444444 PP

>> DUF4157  Domain of unknown function (DUF4157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0049        44      21      46 ..     155     188 ..     153     195 .. 0.92
   2 ?    5.9   0.0    0.0016        15      36      58 ..     366     388 ..     360     393 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0049
     DUF4157  21 Vrvhtg........saaaraaralgAqAfTlgnd 46 
                 Vrvh++        ++a+ a+++ g+ A T+g++
  KKY23859.1 155 VRVHDDddeyikmaDEANYATTQGGTPASTIGDH 188
                 9****999999999999***************98 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0016
     DUF4157  36 lgAqAfTlgndivfaageyqpes 58 
                  +A+A+Tl ++++ ++++++p+ 
  KKY23859.1 366 ANARAMTLDSTVYASPSQFDPDR 388
                 69*****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3260.02
//
Query:       KKY23860.1  [L=504]
Description: putative purine-cytosine permease fcy22 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-27   94.4  36.6    1.2e-26   93.5  36.6    1.5  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5  36.6   6.9e-31   1.2e-26       1     377 [.      57     425 ..      57     481 .. 0.79

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 6.9e-31
  Transp_cyt_pur   1 pvpe.eeRtwktlnlfsiWlganlnintwvigalg.lalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllr 93 
                     pvp  e+++++   +f +W+++  n   +++g l  l++g+++ ++ l+ii++nl++++++a ++l+G ++G +++i +R+s+G +   + +l  
      KKY23860.1  57 PVPMsEKTDDEYIHVFQFWVSMLTNFLPISTGMLStLSYGMSLRDASLTIIFFNLLAYAITAWAALMGVRLGFRQMIHARYSYGKYVVCIIILFN 151
                     7888688889999**********************9************************************************77766666665 PP

  Transp_cyt_pur  94 vviaivwfgvqawiGsealllmlgkifgkwleiggailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaegG 188
                     +   ++++ ++ +i +++l+ + g++               l + v+++i++++ lv++++g+  ++ ++ +  +++ +       +++    gG
      KKY23860.1 152 MAGIVGFTMISGIISGQTLAAVNGNG---------------LSVSVGIVISGLIGLVVSFMGIRILTYLNDWLWVVTLIC------TMIITGCGG 225
                     66667888888888888888776666...............557778888888888888888888888888877776666......344445556 PP

  Transp_cyt_pur 189 pvldkavklg.kselflsav.agvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakfdet 281
                     + ++++v+   +s  ++  +  +++++  tl+  ++D+t y ++ +  +ki ++a+++   +++l++il+aa++ a+ +++ ws  + l ++  +
      KKY23860.1 226 KHFHEQVAAPaASGPLVMNLgCLIIGFSLTLVGVMSDYTCYYRPDAPTYKIYFYAMVGQWLPTVLLMILGAAIGGAVPNVSSWSDANDLYSVGGV 320
                     66776655442444444444056777778***************************************************999988666666666 PP

  Transp_cyt_pur 282 .......agvllililvala.qlgvnisanllsagldlaallPkkinikrgsliaavialvivpwkllsssskl...ftaflsllavflspvagv 365
                            ag++   i v++a  l  ni+++++s  l ++ l+P+ + + r     ++i+++iv+   +++++       +fl ++++  + +++v
      KKY23860.1 321 vvamlepAGGFGKFIAVLMAfSLIGNIAGSMYSITLNFQMLIPYLVRVPRFL--FSIITIAIVIPVGIEAANHFfdsLENFLAIISYWTGCFTAV 413
                     77777778888666666655235679*****************777666654..45555555443334444443366889*************** PP

  Transp_cyt_pur 366 iiadyfvvrrgy 377
                     i+++ f+ r+++
      KKY23860.1 414 IMIEHFFFRKRN 425
                     *********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       854  (0.0476323); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 3108.82
//
Query:       KKY23861.1  [L=858]
Description: putative origin recognition complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-16   60.5   0.0    4.7e-16   59.4   0.0    1.6  1  AAA         ATPase family associated with various cellular ac
    2.9e-11   43.4   0.1    7.3e-11   42.1   0.1    1.6  1  AAA_lid_10  AAA lid domain
    1.6e-08   35.2   0.1    1.8e-07   31.7   0.0    2.6  2  AAA_16      AAA ATPase domain
    3.9e-08   33.7   0.0    8.1e-08   32.6   0.0    1.5  1  AAA_22      AAA domain
     0.0006   19.7   0.0     0.0014   18.5   0.0    1.6  1  BAH         BAH domain
  ------ inclusion threshold ------
      0.014   15.7   0.0      0.033   14.5   0.0    1.5  1  AAA_19      AAA domain
      0.041   13.7   0.0      0.093   12.5   0.0    1.5  1  AAA_11      AAA domain
       0.09   13.0   0.0        0.2   11.9   0.0    1.6  1  AAA_28      AAA domain
      0.093   13.3   0.0       0.44   11.1   0.0    2.2  2  AAA_18      AAA domain
       0.14   11.4   0.0       0.24   10.6   0.0    1.3  1  DUF2075     Uncharacterized conserved protein (DUF2075)
       0.18   11.7   0.0       0.46   10.4   0.0    1.7  1  NACHT       NACHT domain
          5    5.7   5.4        1.6    7.3   2.7    1.5  2  MAP65_ASE1  Microtubule associated protein (MAP65/ASE1 family


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0   3.1e-19   4.7e-16       1     130 [.     410     553 ..     410     555 .. 0.82

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 3.1e-19
                 EEEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCSSS............STTHHHHHHHHHHHH.HHHTS...TSEEEEEETGGGHHHH CS
         AAA   1 vllyGppGtGKTllakavakel..........gvefleisgsellsk............yvgesekkirelfke.akeka...kpsilfiDEidalaks 73 
                 ++++G+pGtGKT++++ v+ +l          +++f+ei+g+++++                 s+++  el+++  ++ +    p+++++DE+d+l+++
  KKY23861.1 410 IYISGTPGTGKTATVREVVGQLslavqeeemdDFSFVEINGMKVTDPhqsysllwealkGDRVSPSHALELLEReFSTPSprrIPCVVLMDELDQLVTK 508
                 5899*****************95555444444478**********6689*****9999844555555555665522333366567************** PP

                 HTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSEEEET CS
         AAA  74 rsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdrkiei 130
                 +           ++++++++++ + ++s++iv++++n++d +++ l  +++++++ +
  KKY23861.1 509 N-----------QSVMYNFFNWPRLRHSRLIVLAVANTMDLPERTLT-NKINSRLGF 553
                 *...........**********************************9.899888765 PP

>> AAA_lid_10  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.1   4.9e-14   7.3e-11      46      82 ..     583     619 ..     570     634 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 4.9e-14
                 -----HHHHHHHHHHT-TTTTHHHHHHHHHHHHHHHT CS
  AAA_lid_10  46 sddaieiasrkvAsvsgdarrAlkiCkrAvEiaekdy 82 
                   da++ a+rkvA vsgdarrAl iC+rAvE+ae+ +
  KKY23861.1 583 DPDAVQFAARKVAAVSGDARRALDICRRAVELAEQAH 619
                 679*******************************975 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.2e-10   1.8e-07       2     160 ..     384     518 ..     383     530 .. 0.67
   2 ?   -2.3   0.0       3.4   5.1e+03     111     135 ..     597     619 ..     553     641 .. 0.65

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.2e-10
      AAA_16   2 lvGReeeleqLlsale.rvrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawre 99 
                 l +R++e +++ s l+ ++++gr+ ++++sG +G+GK++ vre+  +l+ +   + +++ d++             ++ e+     +++ ++    w +
  KKY23861.1 384 LSCRDNEFAEVYSHLSaAISDGRGACIYISGTPGTGKTATVREVVGQLSLA---VQEEEMDDF-------------SFVEINGMKVTDPHQSYSLLWEA 466
                 569********9999989999999*********************999988...455555555.............23344444444444445555555 PP

      AAA_16 100 kleealaavpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslqllaaLlr 160
                    ++++         +s+ lell r ++  s+++ p v+++D+l+++ +  ++++++++ 
  KKY23861.1 467 LKGDRVS---------PSHALELLEREFSTPSPRRIPCVVLMDELDQLVTKNQSVMYNFFN 518
                 4444444.........366666666666565555666777777777776666666666665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.4
      AAA_16 111 lagaeasrllellkrllallsrder 135
                 ++g+ a+r l+ ++r+++l+++ ++
  KKY23861.1 597 VSGD-ARRALDICRRAVELAEQ-AH 619
                 3332.46666666666666666.44 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   5.4e-11   8.1e-08       5     112 ..     407     517 ..     403     541 .. 0.78

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 5.4e-11
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee.erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav...ielliiDE 99 
                   ++++ G +GtGKT ++r+++ ql  + + ee  + ++v+++  + t++ + ++ l +al+ ++ +     ++ le+le+ +++ +    + +++ DE
  KKY23861.1 407 GACIYISGTPGTGKTATVREVVGQLSLAVQEEEmDDFSFVEINGMKVTDPHQSYSLLWEALKGDRVS----PSHALELLEREFSTPSPrriPCVVLMDE 501
                 679**********************877666668999999**********************87777....666666666666666666666******* PP

      AAA_22 100 aqhlr...seealeeL 112
                  + l    +  +++++
  KKY23861.1 502 LDQLVtknQSVMYNFF 517
                 ***9765435555554 PP

>> BAH  BAH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   9.1e-07    0.0014       3      88 ..     121     211 ..     119     259 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 9.1e-07
                 EETTGEEEEEETTSTTEEEEEEEEEEEEETTSTCEEEEEEEEEEECGGGS...TTTTHCCCT...TEEEEEEEEEEEEGGGEEEEEEEEEHH CS
         BAH   3 yavGdfVyfddtstdepyqirrIeeLkenakneeaeatvlvdwflrpeet...ksalklrqk...rElfltrqseilplaairgkcrVvlls 88 
                  +vGd V++++ + + +   + I+ + e+ +  e e  v++ wf+ p+e    k++++  +    +E + t++ +i pl++i g ++V++ +
  KKY23861.1 121 CEVGDTVLLKSPE-EGQDWAGLICAFSETNDIDEEEMCVNIMWFVAPQELvkgKREKDKIADalpNEQYITADFNINPLSSINGSAKVMSPQ 211
                 6899999999999.7777789999999988888899**************766333333333699***********************9755 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.2e-05     0.033       7      36 ..     404     433 ..     399     456 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.2e-05
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallve 36 
                 + +  ++ + + pGtGKT +++++v  l  
  KKY23861.1 404 DGRGACIYISGTPGTGKTATVREVVGQLSL 433
                 56678999**************99987654 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.3e-05     0.093      19      42 ..     409     432 ..     394     463 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.3e-05
      AAA_11  19 itliqGPPGtgKTktivellsqll 42 
                    i+G PGtgKT t+ e++ ql 
  KKY23861.1 409 CIYISGTPGTGKTATVREVVGQLS 432
                 5689*****************994 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00013       0.2       1      19 [.     409     427 ..     409     449 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
      AAA_28   1 kivitGgestGKTtlleaL 19 
                 +i+i+G+++tGKT ++++ 
  KKY23861.1 409 CIYISGTPGTGKTATVREV 427
                 59*************9986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00029      0.44       1      22 [.     410     431 ..     410     530 .. 0.76
   2 ?   -2.2   0.0       3.7   5.5e+03      48      80 ..     614     646 ..     578     648 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00029
      AAA_18   1 IlltGtpGvGKttlakeLskrl 22 
                 I ++GtpG+GKt   +e+   l
  KKY23861.1 410 IYISGTPGTGKTATVREVVGQL 431
                 789************9994443 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.7
      AAA_18  48 eskrldedkldklldaleenssaleegknlvid 80 
                   +++  d+l+k+ +a++e++ ++   +++++d
  KKY23861.1 614 LAEQAHADQLQKHNTAVREIDGKENIDEDIIMD 646
                 344455555566666666665577777777777 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00016      0.24       2     102 ..     408     507 ..     407     522 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00016
     DUF2075   2 avvlVtGvaGtGKtvvllnllael.eddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDEAhr 99 
                 a++ ++G +GtGKt    +++ +l    +ee+   +  v  + ++v   + +++   +  k +   +s   + l+  ++     +++  +vv++DE   
  KKY23861.1 408 ACIYISGTPGTGKTATVREVVGQLsLAVQEEEMDDFSFVEINGMKVTDPHQSYSLLWEALKGDRVSPSHALELLE--REFSTPSPRRIPCVVLMDELDQ 504
                 5789*******************9756666667777777777777766666666655555555555666666666..4555555666666677777666 PP

     DUF2075 100 llt 102
                 l t
  KKY23861.1 505 LVT 507
                 666 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00031      0.46       3      99 ..     410     511 ..     408     547 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00031
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTT.TTTS-....-HCHHHCCCCTS--SSS-C.CHHHHCCSCCCEE........EEEE-S CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslre.lsrsgna.rsladllfsqlpepaapvse.vwavllelperlL........lilDgl 90 
                 + + G +G GKT+ +++++ ++    +++++ +++F+   ++ ++++ ++   l + l  +   p+ + +   +++ +                ++D l
  KKY23861.1 410 IYISGTPGTGKTATVREVVGQLSLAVQEEEMDDFSFVEINGMkVTDPHQSySLLWEALKGDRVSPSHALELlEREFST------PsprripcvVLMDEL 502
                 6799*******************9999999989998744433033332222223333333333333222222122222......123333344777777 PP

                 TT-SS-TCH CS
       NACHT  91 Delvtdlgq 99 
                 D+lvt+++ 
  KKY23861.1 503 DQLVTKNQS 511
                 777776665 PP

>> MAP65_ASE1  Microtubule associated protein (MAP65/ASE1 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0       3.4   5.1e+03     458     474 ..      94     110 ..      80     112 .. 0.68
   2 ?    7.3   2.7    0.0011       1.6     425     477 ..     275     332 ..     262     398 .. 0.68

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 3.4
                 XXXXXXXXXX..XXXXX CS
  MAP65_ASE1 458 pkTPsklksmskvssss 474
                   TPsk ++ s+++  s
  KKY23861.1  94 HHTPSKKRKASAMTDRS 110
                 58999999999888765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHHHHHHHCXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXX.....X CS
  MAP65_ASE1 425 qksarklkkasqteeeilkgskmrtpskrrvtapkTPsklksmskvssssss.....l 477
                  k  rk++++ + + ++ ++ +  ++ ++   +p TP+k++++ ++++++ +      
  KKY23861.1 275 TKGRRKKETQPTETDDMEYKDVPEPEPAEAEAVPITPQKRRKTTATTTTTPKssrvaK 332
                 3444555566666668999999988888888889999987777555444433334321 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (858 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      658  (0.0367003); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 5878.02
//
Query:       KKY23862.1  [L=508]
Description: hypothetical protein UCRPC4_g02675 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3640.95
//
Query:       KKY23863.1  [L=156]
Description: putative prefoldin subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-28   98.0   0.5    4.4e-28   97.6   0.5    1.1  1  Prefoldin        Prefoldin subunit
      0.007   16.3   3.6       0.02   14.8   0.7    2.1  2  Prefoldin_2      Prefoldin subunit
  ------ inclusion threshold ------
      0.023   14.9   0.7       0.06   13.6   0.7    1.6  1  PHM7_cyt         Cytosolic domain of 10TM putative phosphate 
      0.058   13.4   1.0        4.6    7.3   0.1    2.1  2  DUF1664          Protein of unknown function (DUF1664)
      0.082   13.3   2.2        1.1    9.6   0.3    2.1  2  CC2-LZ           Leucine zipper of domain CC2 of NEMO, NF-kap
        0.1   12.6   0.1       0.27   11.2   0.0    1.6  2  Prot_ATP_ID_OB   Proteasomal ATPase OB C-terminal domain
       0.11   12.7   1.4        9.1    6.6   0.3    2.1  2  Spc24            Spc24 subunit of Ndc80
       0.13   12.7   2.4          7    7.2   0.1    2.3  2  Snapin_Pallidin  Snapin/Pallidin
       0.15   12.4   0.9        1.1    9.6   0.0    2.2  2  DUF3914          Protein of unknown function (DUF3914)
       0.37   10.7   2.8       0.46   10.4   0.3    2.3  3  HSBP1            Heat shock factor binding protein 1
       0.87    9.6   5.7        1.5    8.9   1.2    2.2  2  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding


Domain annotation for each model (and alignments):
>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.5   2.7e-31   4.4e-28       2     117 ..      28     144 ..      27     146 .. 0.97

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 2.7e-31
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT..-TT-EEEEEEETTEEEEEE--STTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin   2 keeleslqaelaqlkeaieelektletlktlkk.edegkevlvplgaglyvkaevkdtdkvlvdlGagyyveksleeAiellkkkleelekqlekleee 99 
                  +ele+l++++++l++a+ +++++++ ++t    ++ ++e+lvpl+++lyv++++ d +kv+vd+G+g+yvek+ ++Ai+++ kk+e+l+k+l +le+ 
  KKY23863.1  28 SSELEHLTTSHTKLRSAQIRFRECIKSIETGVIeAKADQEILVPLTGSLYVPGKLADREKVIVDVGTGFYVEKTTQDAIKFYRKKVEDLSKNLNDLEKI 126
                 689***************************88879**************************************************************** PP

                 HHHHHHHHHHHHHHHHHH CS
   Prefoldin 100 leklkdqittleanlaql 117
                 ++ ++d++  +e+ l+q+
  KKY23863.1 127 IQGKSDNLRVVEDVLRQK 144
                 *************99987 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1       0.1   1.7e+02      67      90 ..      20      43 ..      17      58 .. 0.52
   2 !   14.8   0.7   1.2e-05      0.02      41     103 ..      82     145 ..      80     147 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2 67 Leerketlekeiktlekqleklek 90
                 L + + +l+ e++ l+ + +kl+ 
   KKY23863.1 20 LSQLQQRLSSELEHLTTSHTKLRS 43
                 444444444444444444444443 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.2e-05
                  S-TT--EEEEETTEE.EEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT CS
  Prefoldin_2  41 ldedtkvyklvGdvl.vkqdkeevkeeLeerketlekeiktlekqleklekeleelkeelqkkl 103
                  l++ +kv   vG  + v+++ +++++   ++ e+l+k+++ lek ++ +  +l+ ++++l++k+
   KKY23863.1  82 LADREKVIVDVGTGFyVEKTTQDAIKFYRKKVEDLSKNLNDLEKIIQGKSDNLRVVEDVLRQKV 145
                  6777888999996543899******************************************997 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.7   3.7e-05      0.06      53     123 ..      26     133 ..      10     139 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.7e-05
    PHM7_cyt  53 kavrkleaalskykkngkklpkkr....................................pthklgflglkligkk.vdaidyyrekleeldeeieeer 114
                 ++  +le+ ++ + k  + +++ r                                     +  +     + ++k+  dai++yr+k+e+l++++++++
  KKY23863.1  26 RLSSELEHLTTSHTKLRSAQIRFReciksietgvieakadqeilvpltgslyvpgkladrEKVIVDVGTGFYVEKTtQDAIKFYRKKVEDLSKNLNDLE 124
                 555555555555555555544444666666666666666666666666666666666654222222222233443337********************9 PP

    PHM7_cyt 115 ekvkkkplg 123
                 + ++ k  +
  KKY23863.1 125 KIIQGKSDN 133
                 998877655 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0028       4.6      48      96 ..      18      66 ..       7      71 .. 0.86
   2 ?    5.1   0.1     0.014        23      81     121 ..      98     138 ..      88     142 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0028
     DUF1664 48 kqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredl 96
                 ql q+++ l++  +hL+    ++ + +    e++k+i+  v e++ d 
  KKY23863.1 18 PQLSQLQQRLSSELEHLTTSHTKLRSAQIRFRECIKSIETGVIEAKADQ 66
                5899999999999999999999999999999999999999999998875 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.014
     DUF1664  81 iskeikeevtevredlseigedvesvkeaveglesklerie 121
                 + k +++ ++  r+++++++++++ ++++++g   +l+ +e
  KKY23863.1  98 VEKTTQDAIKFYRKKVEDLSKNLNDLEKIIQGKSDNLRVVE 138
                 56788888888999999999999999998888776666655 PP

>> CC2-LZ  Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.052        85      15      52 ..      19      56 ..       8      69 .. 0.76
   2 ?    9.6   0.3   0.00068       1.1       3      47 ..     100     144 ..      98     150 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.052
      CC2-LZ 15 eieeLkaqlqaaeealaakqeeidelkeeikkkeeele 52
                ++++L+++l++  e l++++ ++   +   +++ + +e
  KKY23863.1 19 QLSQLQQRLSSELEHLTTSHTKLRSAQIRFRECIKSIE 56
                78899999999999999999988877777776666666 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00068
      CC2-LZ   3 lkakeaekvkkeeieeLkaqlqaaeealaakqeeidelkeeikkk 47 
                 ++ ++a k +++++e+L+++l++ e+ ++ k++++  +++ +++k
  KKY23863.1 100 KTTQDAIKFYRKKVEDLSKNLNDLEKIIQGKSDNLRVVEDVLRQK 144
                 5667788999***********************999888877665 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00017      0.27      12      55 ..      56     100 ..      47     100 .. 0.84
   2 ?   -2.4   0.0         3   4.9e+03      15      26 ..     126     137 ..     120     148 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00017
                     SEEEEE-TTS-EEEEEE-GGGS.SST--TTEEEEEETTTTEEEEE CS
  Prot_ATP_ID_OB  12 eraiVktssdeevvvslagavp.remLrpgDlVavdkdtgfifEk 55 
                     e  +++  +d+e++v+l+g++  + +L     V vd  tgf +Ek
      KKY23863.1  56 ETGVIEAKADQEILVPLTGSLYvPGKLADREKVIVDVGTGFYVEK 100
                     6679999*************9877789999999999999988776 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3
                     EEE-TTS-EEEE CS
  Prot_ATP_ID_OB  15 iVktssdeevvv 26 
                     i+++ sd+ +vv
      KKY23863.1 126 IIQGKSDNLRVV 137
                     566666666655 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.012        20       2      43 ..      20      61 ..      19      90 .. 0.77
   2 ?    6.6   0.3    0.0056       9.1      16      52 ..     102     138 ..      98     147 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.012
       Spc24  2 ldnekfriakelsdleselesleselaelkeeleeleeesee 43
                l ++++r++ el++l+++ ++l+s + + +e ++ +e+   e
  KKY23863.1 20 LSQLQQRLSSELEHLTTSHTKLRSAQIRFRECIKSIETGVIE 61
                677888899999999999999998888888888777776666 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0056
       Spc24  16 leselesleselaelkeeleeleeeseekeservede 52 
                 ++++++  +++ ++l ++l++le+  + k++++   e
  KKY23863.1 102 TQDAIKFYRKKVEDLSKNLNDLEKIIQGKSDNLRVVE 138
                 5778899999999999999999998888555543333 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0043         7       7      51 ..      23      67 ..      18      92 .. 0.79
   2 ?    5.5   0.3     0.014        22      56      80 ..     104     128 ..      97     146 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0043
  Snapin_Pallidin  7 llellepkldeldeklkelrqsQeeLleqldrlnekLkeleeaqe 51
                     l++ l+++l+ l+++  +lr  Q   +e +++  + + e++ +qe
       KKY23863.1 23 LQQRLSSELEHLTTSHTKLRSAQIRFRECIKSIETGVIEAKADQE 67
                     677788889999999999999999999999999888888888887 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.014
  Snapin_Pallidin  56 pdlkeyakKLvnikkrmsslnerlq 80 
                        +k y+kK+  + k+++ l++++q
       KKY23863.1 104 DAIKFYRKKVEDLSKNLNDLEKIIQ 128
                      5678888888888888888888776 PP

>> DUF3914  Protein of unknown function (DUF3914)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00071       1.1      10      36 ..      20      46 ..      12      65 .. 0.85
   2 ?    1.3   0.1      0.28   4.5e+02      29      76 ..     106     136 ..      90     147 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00071
     DUF3914 10 lsqptkitpsnlehntisstkleskkv 36
                lsq  +   s+leh t s tkl s ++
  KKY23863.1 20 LSQLQQRLSSELEHLTTSHTKLRSAQI 46
                889899999**************9876 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.28
     DUF3914  29 tkleskkvndpikfdirssekemkqpehkfneldlwkmlkdkgvplwi 76 
                  k+  kkv+d  k                 n  dl k+++ k   l +
  KKY23863.1 106 IKFYRKKVEDLSK-----------------NLNDLEKIIQGKSDNLRV 136
                 3333333333222.................222444555555555555 PP

>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.89   1.4e+03      11      18 ..      20      27 ..      11      32 .. 0.80
   2 ?   10.4   0.3   0.00028      0.46      27      44 ..     111     128 ..     110     133 .. 0.90
   3 ?   -2.9   0.0         4   6.6e+03       6      13 ..     136     143 ..     135     143 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.89
       HSBP1 11 LqqlqdkF 18
                L+qlq++ 
  KKY23863.1 20 LSQLQQRL 27
                89999986 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00028
       HSBP1  27 sriDdMssriDdLEksia 44 
                 ++++d+s+ ++dLEk i+
  KKY23863.1 111 KKVEDLSKNLNDLEKIIQ 128
                 699*************98 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4
       HSBP1   6 vVenlLqq 13 
                 vVe++L q
  KKY23863.1 136 VVEDVLRQ 143
                 89999988 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2     0.061        99      36      52 ..      25      41 ..      18      67 .. 0.53
   2 ?    8.9   1.2    0.0009       1.5      33      73 ..     104     144 ..      99     145 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.061
  TMF_DNA_bd 36 kkLrkknkelekeikel 52
                 +L +++++l+++ ++l
  KKY23863.1 25 QRLSSELEHLTTSHTKL 41
                22222222222222222 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0009
  TMF_DNA_bd  33 ntikkLrkknkelekeikelkkkleklekeleeleerlkea 73 
                  +ik  rkk+++l k++++l+k ++ ++ +l   e++l+++
  KKY23863.1 104 DAIKFYRKKVEDLSKNLNDLEKIIQGKSDNLRVVEDVLRQK 144
                 57888899************999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1340  (0.0747392); expected 358.6 (0.02)
Passed bias filter:                      904  (0.0504211); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1114.24
//
Query:       KKY23864.1  [L=468]
Description: putative argininosuccinate lyase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-93  313.2   0.0    2.7e-93  312.8   0.0    1.2  1  Lyase_1   Lyase
    5.7e-24   84.7   0.0    1.6e-23   83.2   0.0    1.8  1  ASL_C2    Argininosuccinate lyase C-terminal


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.8   0.0     3e-97   2.7e-93       1     312 []      17     313 ..      17     313 .. 0.99

  Alignments for each domain:
  == domain 1  score: 312.8 bits;  conditional E-value: 3e-97
                 CEEEEETCHHHHHHHHHHHHHGGGHHHHHCHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHCHCHHCGGHHHBS.SSSSHHHHHHHHHHHHHHHHTTHS CS
     Lyase_1   1 grftvkadklmgiftersrenfrlseedikalaalkkaaakanvdlkeeaaaiikaldevleegklddqfvlkv.iqegsgtavnmnlnevigellgek 98 
                 grft+  d+lm  ++e++ ++ ++ ++di++++a+++a  k ++++++e +ai+k+ ++vl+e++ + +f++k+  +e+++ta++++l e+ig      
  KKY23864.1  17 GRFTGGLDPLMVTYNESIHFDRHIYAQDIRGSIAYARANTKTGILTQSEFEAIEKGFQQVLKEWETG-TFEIKPgVDEDIHTANERRLGEIIG------ 108
                 899****************************************************************.*****9469****************...... PP

                 SGIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTCEE CS
     Lyase_1  99 vepndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllvel 197
                 +++ +k+htg+S+nDqv+T++rl+l+++l++ ++++l  + ++++++a+++ + +++G+Thlq+A+P++++++l++y +a+  d+erl+e+ kr++ ++
  KKY23864.1 109 KDIGGKLHTGRSRNDQVATGMRLWLRDQLRD-IEKHLISFLQVMTARAEAEIEHLMPGYTHLQRAQPIRWSHWLMSYGVAFVADLERLRETIKRVNRSP 206
                 8****************************66.******************************************************************* PP

                 TTTTTTTSSTTTSCCTHHHHHHHHHHHHHCSTEESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSSC-TTSTTTEB CS
     Lyase_1 198 lgggtavgtglnadpefaelvakelakvtglpvkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssgeaglvelslaesepGSSiMPgKvN 296
                 lg+g++vg+++++d++   ++a+el+ ++       ns+  v+drD+vve+l++ + l+ ++s+faeDl+++s+ e+++v l +a+s+ GSS+MP+K+N
  KKY23864.1 207 LGCGALVGNPFGIDRQ---ALARELG-FDD---LIWNSMAGVADRDFVVETLQWYASLMQHISRFAEDLIIYSTAEFNFVRLADAYST-GSSLMPQKKN 297
                 ****************...*******.888...89*****************************************************.********** PP

                 THHHHHHHHHHHHHHH CS
     Lyase_1 297 PvqlElltgvagrvvG 312
                 P++lEll+g++grv+G
  KKY23864.1 298 PDSLELLRGKSGRVFG 313
                 ***************9 PP

>> ASL_C2  Argininosuccinate lyase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   1.8e-27   1.6e-23       2      69 .]     376     443 ..     376     443 .. 0.98

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 1.8e-27
                 TTHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHTT--GGG--HHHHHHH-TT--GGGGGGSSHHHHTT CS
      ASL_C2   2 stATdlADyLvrkGlpFReAHeivgravrlaeekgkeleeltleelkeisplleedveeaLdpeasVa 69 
                 ++ATdlADyLvrkG+pFRe+H+i+gr+v+lae++g+++++l++e+lk++++++e+dv  ++d+e+sV+
  KKY23864.1 376 MLATDLADYLVRKGVPFRETHHISGRVVALAESTGVPMDKLDFEQLKSVDERFEKDVLGCFDYEKSVE 443
                 68****************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.55
# Mc/sec: 2546.04
//
Query:       KKY23865.1  [L=402]
Description: putative acylthioester [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0096   16.3   0.2        3.9    7.9   0.0    2.4  2  4HBT      Thioesterase superfamily


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0008        14      13      70 ..      73     132 ..      67     137 .. 0.86
   2 !    7.9   0.0   0.00022       3.9       4      63 ..     262     320 ..     261     330 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0008
                 HHHHHHHHHHHTTST.TEEEEEEEEEEEESS-BBTTCEEEEEEEEE.EEESSEEEEEEEE CS
        4HBT  13 lDeaagaalrslggr.gilvvvvelsidflrpvrlgdeltvearvl.rlgrtsavvevev 70 
                 lD   g+++ ++ g+  + v+++ ++i  ++p +  ++l++ ++v+  +gr+s++v+ +v
  KKY23865.1  73 LDALSGVIAYKHTGEgVTTVTAAVDRIFIKHPLKEICDLELSGQVTfATGRSSMEVSLQV 132
                 567778888888888789999999*********************956899****99887 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00022
                 B-HHHHHHH.HHHHHHHHHHHTTSTTEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSE CS
        4HBT   4 vhgGvylal.lDeaagaalrslggrgilvvvvelsidflrpvrlgdeltvearvlrlgrts 63 
                 ++gG++l+  ++ a ++a++  +   +  +++ +  +f  pv +g++l+v a+++++  ++
  KKY23865.1 262 IFGGYLLKQtFELAFTCAAAFSHT--RPSFISLDPSTFEEPVPVGSVLYVSASIVYTEPST 320
                 577777765378888888888888..6999999999******************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2777.96
//
Query:       KKY23866.1  [L=681]
Description: putative transmembrane emp24 domain containing protein 2 precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-49  167.7   0.4      4e-49  167.0   0.4    1.3  1  EMP24_GP25L  emp24/gp25L/p24 family/GOLD
  ------ inclusion threshold ------
      0.016   15.5   0.0      0.038   14.2   0.0    1.6  1  SdrD_B       SdrD B-like domain


Domain annotation for each model (and alignments):
>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.0   0.4   4.5e-53     4e-49       2     182 .]     500     676 ..     499     676 .. 0.93

  Alignments for each domain:
  == domain 1  score: 167.0 bits;  conditional E-value: 4.5e-53
  EMP24_GP25L   2 ltfklpageekCfyeelkkgtlltgsyqvtdgg....aaldvdlsvkdpdgngerlvkkkdresegdfsftakesgeykvCfdnsfstksskkvsfdi 95 
                   +++l+a+e++Cf+e+l++++++t+++qv d++     +ld+d+ ++   ++g    ++k ++s+ d+sfta+++g+y++Cf+n++++ +sk+vsf++
   KKY23866.1 500 HNIQLKAHEKECFHEQLHRDDKMTVTFQVGDREfggaGNLDIDFFIR--LPSGAYETNEKTVSSG-DYSFTALQDGKYTYCFSNEKWSANSKEVSFNV 594
                  689***************************999999988********..7777888899888776.******************************** PP

  EMP24_GP25L  96 evgseasdykdsakkekletleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavlqvyyLkrfFk 182
                  +    +     s  + + ++le+e+k+l+e ld++k+eq y+  re+++r+t+estn rv wwsi+ql+vl++ +++qv+ LkrfF+
   KKY23866.1 595 HGVVYV-----SESEASQDPLEREVKQLSELLDQVKDEQGYIVVRERTHRNTAESTNARVKWWSIFQLGVLIGEGIFQVWWLKRFFE 676
                  *74433.....45677789*******************************************************************7 PP

>> SdrD_B  SdrD B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.3e-06     0.038      40      68 ..     554     582 ..     541     624 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.3e-06
      SdrD_B  40 atttTdasGkYkFtnltpGeYkVeftapa 68 
                 ++  T +sG Y+Ft l++G+Y+  f++ +
  KKY23866.1 554 TNEKTVSSGDYSFTALQDGKYTYCFSNEK 582
                 5667899***************9997643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      704  (0.039266); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4626.15
//
Query:       KKY23867.1  [L=225]
Description: putative cord and cs domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-34  117.8  15.9    4.8e-26   91.3   8.3    2.2  2  CHORD     CHORD
      5e-13   49.9   0.0    7.4e-13   49.3   0.0    1.3  1  CS        CS domain


Domain annotation for each model (and alignments):
>> CHORD  CHORD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.8   2.7e-11   2.4e-07       2      38 ..       4      36 ..       3      37 .. 0.89
   2 !   91.3   8.3   5.3e-30   4.8e-26       2      62 ..      40     100 ..      39     102 .. 0.96

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 2.7e-11
                E--SBTT--EE-STT--TT-.EEEB---EEEETTEEE CS
       CHORD  2 kCknkGCgkkfeeeeneeeaeCtyHpgapvfheglkg 38
                kC +kGCgk f++ ++     C yHpg+p fheg+kg
  KKY23867.1  4 KCVHKGCGKVFSDPDE----PCIYHPGPPDFHEGQKG 36
                8***********6554....5*************996 PP

  == domain 2  score: 91.3 bits;  conditional E-value: 5.3e-30
                 E--SBTT--EE-STT--TT-.EEEB---EEEETTEEEETTTTEEESSHHHHTT----EEE- CS
       CHORD   2 kCknkGCgkkfeeeeneeeaeCtyHpgapvfheglkgWsCCkkkvldFdeFlkiegCttgk 62 
                 +Ck+kGC+++++++  +e++eC++Hpga+vfheg+kgWsCCk++vl+F+eF+kiegCt++k
  KKY23867.1  40 TCKRKGCNATYDGKVPREDEECVHHPGAAVFHEGSKGWSCCKRRVLEFEEFMKIEGCTKKK 100
                 8*********************************************************976 PP

>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   8.3e-17   7.4e-13       1      76 []     119     196 ..     119     196 .. 0.84

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 8.3e-17
                 SSCEEEEETTEEEEEEE-TTCTTTTTCEEEEEETTEEEEEETSCEEEEECE.......BSS-BETTTEEEEEETTEEEEEEEB CS
          CS   1 vkydWyQtldeVvvtiyvkkvnikkkdvkvefkerslkvkigkeklliege.......LfgpIdpeesswtieskkveitLkK 76 
                 v++d+yQt++ V+ ++y+kk++ +k +v+++ +++s+ v +   +  ++ +       LfgpId+e s+++i+++k+e++L K
  KKY23867.1 119 VRTDFYQTSTAVIASLYLKKIDSSKAKVDFS-SPNSIDVDL---PTADD-KryattipLFGPIDTEASKYKIMGTKLEFSLIK 196
                 589******************7777777776.7888****9...33333.34666677***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.48
# Mc/sec: 1408.28
//
Query:       KKY23868.1  [L=1866]
Description: putative kh domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-12   47.8   0.0    4.2e-12   46.6   0.0    1.7  1  HET          Heterokaryon incompatibility protein (HET)
    2.9e-10   40.2   0.0     0.0032   17.6   0.0    4.0  3  PPR_2        PPR repeat family
    4.4e-07   29.7   0.8     0.0047   17.1   0.0    4.5  4  PPR          PPR repeat
    4.6e-06   26.4   0.0    0.00038   20.2   0.0    2.6  2  KH_1         KH domain
     0.0051   17.2   0.1      0.016   15.6   0.1    1.9  1  zf-met       Zinc-finger of C2H2 type
  ------ inclusion threshold ------
      0.012   15.3   1.1       0.75    9.6   0.0    3.6  3  PPR_1        PPR repeat
       0.14   12.5   0.1       0.14   12.5   0.1    1.9  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
        1.6    8.2   9.3        3.8    6.9   9.3    1.6  1  CAP_N        Adenylate cyclase associated (CAP) N terminal


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   1.9e-15   4.2e-12       1     146 []     122     276 ..     122     276 .. 0.77

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 1.9e-15
         HET   1 YeaLSYvWgdsk.............ekeeievng..........klleltenledalqvlrklgerylWiDaiCInQdddkekskqvqlmadIYsnAel 76 
                 + a+SY+W +++             +       +          + +     +++a++ +r  g+r +WiD++C  Q d+++ +  +q  + I+++A++
  KKY23868.1 122 FLAVSYCWPKNTagkpistpqtyrfR-------KrnkngqyeelRMCPPDHIVDRAVEFARVAGIRQIWIDQVCLPQGDSADHQLGIQASGIIFQQAYA 213
                 679*****998855555655444440.......1555556665678888999*********************************************** PP

         HET  77 vivalgsesedsgllalealralkkekleekeielkksaekkkellekeeraieellespwfkRvWvlQE 146
                 ++    s   ++  l    ++al  ++ +  ++ ++     ++ + +   + ++ l++ +w +R+W+lQE
  KKY23868.1 214 TVGLFESVIREQ-RLVDGLFHALYWDQKDG-QALTN-----DNGVTTGFLDFLKLLTTDHWASRAWTLQE 276
                 **9999998766.44444444444333333.22222.....24578889999999**************9 PP

>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.4e-06    0.0032       3      37 ..    1009    1043 ..    1007    1045 .. 0.94
   2 !    6.9   0.0    0.0033       7.3       2      31 ..    1078    1107 ..    1077    1111 .. 0.92
   3 !   10.7   0.0   0.00021      0.48      26      46 ..    1164    1185 ..    1157    1189 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.4e-06
       PPR_2    3 vvtyNtlIsglckkgkveeAfklfneMkkrglePn 37  
                   vt+N+l +  +k g++    +lf+eM +rgl+ n
  KKY23868.1 1009 EVTFNILFDIAVKSGQFLLSKELFDEMGRRGLRLN 1043
                  79*****************************9887 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0033
       PPR_2    2 dvvtyNtlIsglckkgkveeAfklfneMkk 31  
                  d+ + Nt++ gl++ g+ ++A ++++ Mk+
  KKY23868.1 1078 DTQVLNTVMVGLLESGEESSAEQIYERMKS 1107
                  56678***********************95 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00021
       PPR_2   26 fneMkkr.glePnsyTysilik 46  
                  +  M +r +l+P+ yTy ili+
  KKY23868.1 1164 YLAMHSRaNLKPDHYTYRILIS 1185
                  556777669***********97 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.65   1.5e+03      13      30 ..     986    1003 ..     970    1003 .. 0.79
   2 !   17.1   0.0   2.1e-06    0.0047       1      31 []    1010    1040 ..    1010    1040 .. 0.97
   3 ?   -2.6   0.0         4   8.9e+03       7      27 ..    1051    1071 ..    1051    1074 .. 0.77
   4 !    6.9   0.0    0.0038       8.5       4      28 ..    1083    1107 ..    1081    1108 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.65
         PPR   13 nGkleeAlelfkeMkekG 30  
                  +G+++  ++++++M+ +G
  KKY23868.1  986 AGEVRRSMDYWRKMETEG 1003
                  577888888888888776 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 2.1e-06
         PPR    1 vtynslIsgycknGkleeAlelfkeMkekGi 31  
                  vt+n+l +  +k+G++   +elf+eM ++G+
  KKY23868.1 1010 VTFNILFDIAVKSGQFLLSKELFDEMGRRGL 1040
                  8***************************996 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 4
         PPR    7 IsgycknGkleeAlelfkeMk 27  
                  I +++k G+ + + + +++ +
  KKY23868.1 1051 IWSCGKMGNADAVRQAYHDFV 1071
                  5689*****999888777655 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0038
         PPR    4 nslIsgycknGkleeAlelfkeMke 28  
                  n+++ g+  +G+ + A++++++Mk+
  KKY23868.1 1083 NTVMVGLLESGEESSAEQIYERMKS 1107
                  9**********************96 PP

>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.03        68      18      66 .]    1518    1574 ..    1517    1574 .. 0.77
   2 !   20.2   0.0   1.7e-07   0.00038      13      63 ..    1627    1687 ..    1617    1690 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.03
                  GGHHHHHHHHHHT-EEEEESSTT..........T.-EEEEEE.SHHHHHHHHHHHHH CS
        KH_1   18 gGsnIkeIreetgakIkvpksedeg.......sderevtisG.speavekAkeliee 66  
                  +Gs+ k I++etga ++  +s  ++       +++  ++++  s+++ ekA+e+iee
  KKY23868.1 1518 KGSTQKMIKDETGADVTTRGSYYPDksmatavNPPLYLHVTStSKAGLEKAVEKIEE 1574
                  89**************94433333357777888888888888888889999888875 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1.7e-07
                  HHHTGGGHHHHHHHHHHT-EEEEESSTT.............T.-EEEEEE.SHHHHHHHHHH CS
        KH_1   13 riIGkgGsnIkeIreetgakIkvpksedeg..........sderevtisG.speavekAkel 63  
                   ++G gG+ +k+I++et +++++ + + +g          +++  +++ G +p  v +Akel
  KKY23868.1 1627 QVVGQGGAYVKHIQQETRCRVQIKG-RGSGfmehgtgqesDEPMYLHVAGpDPREVTRAKEL 1687
                  699*******************984.444446999999766666677789999999999987 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1     7e-06     0.016       2      22 ..     713     733 ..     713     733 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7e-06
      zf-met   2 yCelCnvtfnsesqlksHlqG 22 
                 +C+lCn +f se +++ Hl +
  KKY23868.1 713 TCSLCNSRFPSEEAFDEHLLS 733
                 6*****************965 PP

>> PPR_1  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.9   6.5e+03      19      26 ..     788     795 ..     788     796 .. 0.90
   2 ?    2.1   0.0      0.07   1.6e+02       2      15 ..    1004    1017 ..    1003    1035 .. 0.65
   3 ?    9.6   0.0   0.00033      0.75       2      33 ..    1172    1204 ..    1171    1205 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.9
                 HTS-HHHH CS
       PPR_1  19 kaGrvdeA 26 
                 ++Gr+++A
  KKY23868.1 788 REGRLNKA 795
                 89*****9 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.07
                  S----HHHHHHHHH CS
       PPR_1    2 GlkPdvvTYNtLId 15  
                  G+k   vT+N+L d
  KKY23868.1 1004 GIKASEVTFNILFD 1017
                  889999****9955 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00033
                  S----HHHHHHHHHHHH.HTS-HHHHHHHHHHH CS
       PPR_1    2 GlkPdvvTYNtLIdGlC.kaGrvdeAfelfdeM 33  
                  +lkPd +TY +LI+    + G++d+   l+d+M
  KKY23868.1 1172 NLKPDHYTYRILISHHTeRTGNLDRTTVLLDDM 1204
                  69***********97764557777777777777 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.0   1.6         8   1.8e+04       3       8 ..      94      99 ..      93     100 .. 0.87
   2 ?   12.5   0.1     6e-05      0.14       4      23 ..     714     733 ..     713     733 .. 0.94

  Alignments for each domain:
  == domain 1  score: -5.0 bits;  conditional E-value: 8
                 BBTTTT CS
  zf-C2H2_jaz  3 YCvlCd 8 
                 YC +C+
   KKY23868.1 94 YCNECQ 99
                 9*9997 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 6e-05
                  BTTTTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   4 CvlCdKyFksenaldnHlkS 23 
                  C lC+  F se+a+d+Hl S
   KKY23868.1 714 CSLCNSRFPSEEAFDEHLLS 733
                  *****************976 PP

>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   9.3    0.0017       3.8     207     275 ..    1769    1856 ..    1765    1860 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0017
                  HHHHHHHHS.TTS----..TTSBE....................SSC--XXXXXXX.....XX......XXXXXX.....XXXXXXXXXXXX CS
       CAP_N  207 LqaYvkeyh.ttGltWn..kkGkdaeealk.............aaaaaasaaaagg.pppPpP......pPppasvfeeesaaasasaaagg 275 
                  Lq+Y  +y+ t+G++    + G d+ +a+              +++aa++++++++ pppPpP      pPpp++     s+a+ a+a+++g
  KKY23868.1 1769 LQDYYAQYFgTNGPQAAagQAGADPYAAYGgyqnyvayyqyyaQQQAAQQQQQTSAsPPPPPPsgdstaPPPPPPG----SSAPGAAAPGNG 1856
                  7777777774557766423444444444447777777888876444444444444425555556666643333332....223445555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1866 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.10u 0.32s 00:00:01.42 Elapsed: 00:00:00.52
# Mc/sec: 10749.66
//
Query:       KKY23869.1  [L=757]
Description: hypothetical protein UCRPC4_g02682 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 5101.72
//
Query:       KKY23870.1  [L=770]
Description: putative 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   9.5e-153  508.2   0.0   6.2e-148  492.4   0.0    2.3  2  Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   6.2e-118  393.9   0.0   2.7e-111  372.1   0.0    3.1  3  Meth_synt_1  Cobalamin-independent synthase, N-terminal domai
  ------ inclusion threshold ------
       0.03   13.5   0.0       0.54    9.3   0.0    2.5  3  URO-D        Uroporphyrinogen decarboxylase (URO-D)


Domain annotation for each model (and alignments):
>> Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   4.5e-06     0.027     119     188 ..     157     225 ..     123     299 .. 0.80
   2 !  492.4   0.0    1e-151  6.2e-148       1     323 [.     439     762 ..     439     763 .. 1.00

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.5e-06
                  -SS-BEEEEE-HHHHHHTSEE-..TTS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-TTSSTT--SSGGG CS
  Meth_synt_2 119 tdkpvkglltGpvtilnwsfvr..ddvdraeaaaqialalrdevkdLeaaGikviQiDepalreGlplkkad 188
                  t +p   +l Gpv+ l+ +     + +d  + + ++  +  + + +L+aaG++ +QiDep l   lp k+++
   KKY23870.1 157 TTRP---VLVGPVSFLALAKADrgQSIDPITLLEKLLPVYEELLVQLKAAGAETVQIDEPVLVFDLPAKTKN 225
                  4444...67888888887777634445555555666666666677*****************9999998854 PP

  == domain 2  score: 492.4 bits;  conditional E-value: 1e-151
                  S-BB--SB---SS-----------------HHHHHHHHHHHHHHHHHHTT--SCBE-B-TT-SSTTHHHHTTSTTEE--SS--EEEETTEEE---EE- CS
  Meth_synt_2   1 lpTttiGSfPqtaevrearaevkkgelseeeyekaireeiekvvrrqeelgvDvlvhgepeRgdmveyfgealdgfaftkngwvqsygsrcvrppiiv 98 
                  +pTttiGSfPqt+e+r  r+++ kge+++e+yek+i++ei++vv+ qeel++DvlvhgepeR+dmv+yfge+l+g++ft+++wvqsygsrcvrppiiv
   KKY23870.1 439 FPTTTIGSFPQTKEIRLQRNKFTKGEITAEQYEKFIEKEIDDVVKIQEELDLDVLVHGEPERNDMVQYFGERLTGYVFTTHAWVQSYGSRCVRPPIIV 536
                  8************************************************************************************************* PP

                  SS---SS-SSTHHHHHHTTS-SS-BEEEEE-HHHHHHTSEE-TTS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-TTSSTT--SSG.GGHHHHHHH CS
  Meth_synt_2  99 gdvsrpaamtvkesalaqsltdkpvkglltGpvtilnwsfvrddvdraeaaaqialalrdevkdLeaaGikviQiDepalreGlplkk.adwaayldw 195
                  gd+srpaamtvkes++a s+ +kp+kg+ltGp+t+l+wsf+rddv+++ +a+q+alalrdev dLeaaGi viQ+DepalreGlpl+  ++++ayl+w
   KKY23870.1 537 GDISRPAAMTVKESKYAASVAKKPMKGMLTGPITCLRWSFPRDDVHQSVQAQQLALALRDEVLDLEAAGIYVIQVDEPALREGLPLRAgKEREAYLKW 634
                  ****************************************************************************************99******** PP

                  HHHHHHHHHTTS-TTSEEEEEES-S--CCCHHHHHTT--SEEEESBSSS-SSGGGGTTTT---SEEEEBSS-TTSSS--THHHHHHHHHCHHCTS-ST CS
  Meth_synt_2 196 aveafrldtiaaaddtqvhtHlCyselndilsaiaaldvDvitieasrsdeellealeevkygrgvglGvydihsprvpsmeeiaalikkaldvapke 293
                  av++frl+t++++d tq+h+H+Cyse++d   aiaald+Dv++ie+s+sd +ll+++++  y+r++g+Gvydihsprvps +ei+++i+++l+ ++ e
   KKY23870.1 635 AVDSFRLSTAGVEDGTQIHSHFCYSEFQDFFYAIAALDADVLSIENSKSDAKLLKVFVDEAYPRHIGPGVYDIHSPRVPSEQEIKDRIEEMLQYLKPE 732
                  ************************************************************************************************** PP

                  SB-BB-SS-STTS-HHHHHHHHHHHHHHHH CS
  Meth_synt_2 294 rlwvnPdCGLktrkreearaalknmvdaAk 323
                  +lw++PdCGLktr+++e+++al+nmv+aAk
   KKY23870.1 733 QLWIDPDCGLKTRQWKETKEALTNMVNAAK 762
                  *****************************8 PP

>> Meth_synt_1  Cobalamin-independent synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  372.1   0.0  4.4e-115  2.7e-111       2     311 ..       4     321 ..       3     323 .. 0.96
   2 ?   -0.4   0.0      0.11   6.3e+02      12      59 ..     449     496 ..     441     504 .. 0.85
   3 !   17.6   0.0   3.7e-07    0.0022     140     211 ..     550     621 ..     537     699 .. 0.67

  Alignments for each domain:
  == domain 1  score: 372.1 bits;  conditional E-value: 4.4e-115
                  EB-S---SSTTTTHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHCTT-SBEEES---SS-HHHHHHHHTT---GGGTT.SSSSSHHHHHHHHHS CS
  Meth_synt_1   2 ssilGfPriGekRelkkalesywkgkiseeeLektakeLrakhwkkqkeagidlipvndfslYDhvLdtavllgaiPerfkleekkeeldtyFalaRG 99 
                  ssilGfPr+G  R+lkka+e+yw gk+s+++L++++k+Lr++hwk+q++agid+ip+ndf++YD+vLd+  l+gaiPer+++  + + +d+yFa++RG
   KKY23870.1   4 SSILGFPRMGVLRDLKKATEAYWGGKLSQADLLAEGKRLRLEHWKIQQKAGIDIIPSNDFAFYDQVLDHIQLFGAIPERYSK-YNLDPIDEYFAMGRG 100
                  79******************************************************************************86.799************ PP

                  C......TTCT--EEEESTTSS-EEEE-BE-SS.----S.-THHHHHHHHHHHTTGGEEEEEE-HHHHHHT-EETTCC..-HCHHHHHHHHHHHHHHH CS
  Meth_synt_1 100 k......kdvaalemtkwFntnYHYlvPelekdtefkla.seklleevkeakalgieakpvllGpltflkLskakeek.veklellekLlpvYkelle 189
                          dv++lem+kwF++nYHY++P+l++ ++fkla + k++ e++eak++gi+++pvl+Gp++fl+L+ka++++ +++++llekLlpvY+ell 
   KKY23870.1 101 LqkpaegIDVPSLEMVKWFDSNYHYVKPTLQDGQTFKLAsKPKPVVEFEEAKSAGITTRPVLVGPVSFLALAKADRGQsIDPITLLEKLLPVYEELLV 198
                  989998889****************************995779*******************************99888******************* PP

                  HHHHTT-SEEEEE-GGGGSSGCHHHHHHHHHHHHHHT.CCTTTSEEEEE--SS-.CCHHHHHTTSS.TSEEEEETSSHCHHHHHHHHCTT.TTSEEEE CS
  Meth_synt_1 190 eLkeagvewvqidEPalvldlekeelealkeaYeela.kekkelklllatyFdsvaealellaelp.veglglDlvraeenlealkkaglpedkvLsa 285
                  +Lk+ag+e+vqidEP+lv+dl++++++a+k aYe+l    +k +k++latyF++v +++ +  +l+ + ++++Dlvr++e+le++ + +l  ++vLsa
   KKY23870.1 199 QLKAAGAETVQIDEPVLVFDLPAKTKNAFKPAYEKLVgLGDKIPKVVLATYFGDVVHNIGVFEDLKdLYAIHVDLVRSPEQLETVLA-ALGPKQVLSA 295
                  ************************************84567889******************998659******************9.999******* PP

                  EEE-SSS-B---HHHHHHHHHHHHHC CS
  Meth_synt_1 286 GvidGrniWradlekalelleelaek 311
                  Gv+dGrniW++++++a+e++e+  +k
   KKY23870.1 296 GVVDGRNIWKTNFKRAIETVETAIQK 321
                  ********************997665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.11
                  TTTHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHCTT-SBEEES CS
  Meth_synt_1  12 ekRelkkalesywkgkiseeeLektakeLrakhwkkqkeagidlipvn 59 
                  + +e++   +++ kg+i++e+ ek  ++   + +k+q+e ++d+   +
   KKY23870.1 449 QTKEIRLQRNKFTKGEITAEQYEKFIEKEIDDVVKIQEELDLDVLVHG 496
                  4689999999*****************9999********999987665 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 3.7e-07
                  HHHH.HHTTGGEEEEEE-HHHHHHT-EETTCC.-HCHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSGC CS
  Meth_synt_1 140 vkea.kalgieakpvllGpltflkLskakeekveklellekLlpvYkelleeLkeagvewvqidEPalvldle 211
                   k a + +   +k +l Gp+t l  s  +++  ++    ++L  + ++ + +L++ag+ ++q+dEPal   l+
   KKY23870.1 550 SKYAaSVAKKPMKGMLTGPITCLRWSFPRDDV-HQSVQAQQLALALRDEVLDLEAAGIYVIQVDEPALREGLP 621
                  444425566678999***********999988.6666677777666665668***************987663 PP

>> URO-D  Uroporphyrinogen decarboxylase (URO-D)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.037   2.2e+02     178     206 ..     185     213 ..     183     335 .. 0.63
   2 ?   -3.6   0.0       0.8   4.8e+03     208     244 ..     462     496 ..     460     514 .. 0.73
   3 ?    9.3   0.0   9.1e-05      0.54     215     344 ..     630     759 ..     603     762 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.037
                 HHHHHHHHHHHHHHHHHHTT-SEEEEEET CS
       URO-D 178 lldkltdvvieylkaqieagAdaiqifDs 206
                 ll+kl  v  e l ++ +agA+ +qi + 
  KKY23870.1 185 LLEKLLPVYEELLVQLKAAGAETVQIDEP 213
                 8999999999999999999**99999884 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.8
                 GGGS-HHHHHHHTHHHHHHHHHHHHH.H--S-EEEEE CS
       URO-D 208 agllspedfeefvlpylkrivdevkaegpkvpvilfi 244
                  g ++ e++e+f+ + +  +v+  ++   +  v++++
  KKY23870.1 462 KGEITAEQYEKFIEKEIDDVVKIQEEL--DLDVLVHG 496
                 678999999999998888888766655..34666666 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 9.1e-05
                 HHHHHTHHHHHHHHHHHHH.H--S-EEEEESSHH.HHHHHHTTS--SEEE--TTS-HHHHHH....SS....EEE--B-G.GGGG.S-HHHHHHHHHHH CS
       URO-D 215 dfeefvlpylkrivdevkaegpkvpvilfikgagaeiledlaelgadvlsldwtvdlkeaar....evgdkvalqGnldPialLl.gspeeiekevkei 308
                  + ++++   +   ++v++ ++     +f+  + + ++ ++a l+advls++++ + ++  +    e + + +  G  d +      s++ei+++++e+
  KKY23870.1 630 AYLKWAVDSFRLSTAGVEDGTQ--IHSHFCYSEFQDFFYAIAALDADVLSIENSKSDAKLLKvfvdEAYPRHIGPGVYDIH-SPRvPSEQEIKDRIEEM 725
                 5666666666666777777554..444555555777*******************88888888998777888889999995.6666************* PP

                 HT.T---SSSEEB-BSS---TTS-HHHHHHHHHHHH CS
       URO-D 309 lekgaggkkgyilnlGhgippetppenvkalveavk 344
                 l+  + ++++ ++ + +g+      e+ +al++ v+
  KKY23870.1 726 LQ--YLKPEQLWIDPDCGLKTRQWKETKEALTNMVN 759
                 **..466999********999888888888877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      603  (0.0336327); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.53
# Mc/sec: 4394.38
//
Query:       KKY23871.1  [L=375]
Description: putative sam dependent [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-17   62.0   0.0    8.8e-17   61.4   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    3.1e-12   47.0   0.0    6.6e-12   46.0   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    4.5e-10   40.0   0.0    1.1e-09   38.8   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    8.4e-08   32.1   0.0    2.7e-07   30.5   0.0    1.7  1  Methyltransf_31  Methyltransferase domain
    3.4e-06   27.7   0.0    1.5e-05   25.6   0.0    2.2  2  Methyltransf_12  Methyltransferase domain
     0.0074   16.0   0.0      0.015   15.1   0.0    1.4  1  Methyltransf_16  Lysine methyltransferase
  ------ inclusion threshold ------
      0.025   14.1   0.1      0.064   12.8   0.0    1.7  2  MTS              Methyltransferase small domain
        0.1   11.9   0.0       0.16   11.2   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   3.9e-20   8.8e-17       3     163 ..     131     301 ..     129     303 .. 0.81

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 3.9e-20
  Methyltransf_23   3 aqreeelsdklerllpklraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevleh 94 
                      ++++  +    + l+p  ++++ +Ld+G+GtGi++ ++ ++    svtg Dlsp + + +++  + + d f  +e+++++++fd+I++r+ l+ 
       KKY23871.1 131 HHVFLLAMNGALHLAPIGDSPSAILDLGTGTGIWAIEMGDQYPsaSVTGNDLSPTLPQYVPSNVQFEIDDF-CDEWTYESESFDFIHARQILGC 223
                      66665544555568899999******************7774446*********99998876666666666.679999**************** PP

  Methyltransf_23  95 vpdppellrqiatllkpgGylllseplasl......kedrllldw.lylvpagrhi..sffsarslkelleeaGlevv 163
                      v+++++l r++ ++l+pgG+ +  e+++        ++  +l+ + +y+v+ag+ +   +   +  k+ + +aG+ +v
       KKY23871.1 224 VDSYTSLYRKVLRCLRPGGWYEQVEIDVTNtsedgtHAGTALDTMgPYIVEAGERMgkPLRYLHKTKQTMIDAGFIDV 301
                      ********************9988876655667888888888888889999986655777777777788888877666 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0     3e-15   6.6e-12       1      97 []     154     242 ..     154     242 .. 0.92

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 3e-15
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      +LdlG+GtG +++++ +++++a+vtg D+s+++ +++ +++       +f+  d+ +++ +e++sfD++++++ l +++   +  +++++ r+L
       KKY23871.1 154 ILDLGTGTGIWAIEMGDQYPSASVTGNDLSPTLPQYVPSNV-------QFEIDDFcDEWTYESESFDFIHARQILGCVD--SYTSLYRKVLRCL 238
                      8******************99**************998877.......8999999566*************75599987..7889********* PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      +pgG
       KKY23871.1 239 RPGG 242
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   4.8e-13   1.1e-09       1      93 [.     155     243 ..     155     245 .. 0.90

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 4.8e-13
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC.TSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaek.lpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      Ld+G+GtG+ a ++ +++  a+v+g Dls+++ +++ ++       v+f   d+ +   +e++sfD++ +++ l  v+   ++ +++ R+L+pg
       KKY23871.1 155 LDLGTGTGIWAIEMGDQYpsASVTGNDLSPTLPQYVPSN-------VQFEIDDFCDeWTYESESFDFIHARQILGCVDSYTSLYRKVLRCLRPG 241
                      8**************9999*************9777444.......5666677776369*********************************** PP

                      EE CS
  Methyltransf_11  92 Gl 93 
                      G+
       KKY23871.1 242 GW 243
                      *7 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.2e-10   2.7e-07       5     107 ..     152     244 ..     149     276 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.2e-10
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkileei 97 
                        +lDlG+GtG  ++e+    +p a v+G D s++  ++  +        nv+Fe+ d+ +     +e e+fD+i+++++l ++ +  + ++++
       KKY23871.1 152 SAILDLGTGTGIWAIEMG-DQYPSASVTGNDLSPTLPQYVPS--------NVQFEIDDFCDeWT--YESESFDFIHARQILGCVDSYTSLYRKV 234
                      679***************.7799*************999988........8**********444..999************************* PP

  Methyltransf_31  98 ervlkpggil 107
                       r l+pgg +
       KKY23871.1 235 LRCLRPGGWY 244
                      *******965 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       5.1   1.1e+04       5      28 ..      54      76 ..      51      97 .. 0.63
   2 !   25.6   0.0   6.9e-09   1.5e-05       1      98 [.     155     243 ..     155     244 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.1
  Methyltransf_12  5 cGtGsllralleklpdieytgvDi 28
                     +G G+ ++  le+ +++ ++g+D 
       KKY23871.1 54 AGLGDSSQDALEN-EQTILVGSDH 76
                     5667777777776.3444445443 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 6.9e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+GtG  + ++ ++ p +++tg D+sp   +      +++++++++++++e         ++sfD ++a + l +++   ++ +++ ++L+
       KKY23871.1 155 LDLGTGTGIWAIEMGDQYPSASVTGNDLSPTLPQYVPSNVQFEIDDFCDEWTYE---------SESFDFIHARQILGCVDSYTSLYRKVLRCLR 239
                      8******************************99444444444444444444444.........259**************************** PP

  Methyltransf_12  95 pgGr 98 
                      pgG+
       KKY23871.1 240 PGGW 243
                      ***7 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   6.6e-06     0.015      45      91 ..     149     196 ..     132     208 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.6e-06
  Methyltransf_16  45 lsklsvlELGsGtGlvGlavaellpeakviltDlee.llellkkniel 91 
                       s+  +l+LG GtG+  + +  ++p+a+v+  Dl+  l + + +n++ 
       KKY23871.1 149 DSPSAILDLGTGTGIWAIEMGDQYPSASVTGNDLSPtLPQYVPSNVQF 196
                      57789*****************************98344678888876 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.7   3.7e+03       7      27 ..      76      96 ..      74     103 .. 0.77
   2 ?   12.8   0.0   2.8e-05     0.064      33      64 ..     152     183 ..     126     195 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.7
                ETTSTTTTS--HHHHHHHHHC CS
         MTS  7 lpgvFskdklDkGsklLletl 27
                +  v+s + lD  ++ L + +
  KKY23871.1 76 HDSVYSDADLDSLTASLTSSI 96
                678999999999998887766 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2.8e-05
                 SEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  33 gkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                   +lDlG+G+G+ ++++ +++p+a+vt  d +
  KKY23871.1 152 SAILDLGTGTGIWAIEMGDQYPSASVTGNDLS 183
                 469***********************998865 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.2e-05      0.16      64      95 ..     152     183 ..     124     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.2e-05
                     SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  64 kslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     + ++D+G GtG  a ++  +yP+ +v+  Dl+
      KKY23871.1 152 SAILDLGTGTGIWAIEMGDQYPSASVTGNDLS 183
                     5799***********************99995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2622.59
//
Query:       KKY23872.1  [L=377]
Description: hypothetical protein UCRPC4_g02685 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-10   40.4   0.2    4.7e-08   32.8   0.0    2.1  2  14-3-3    14-3-3 protein


Domain annotation for each model (and alignments):
>> 14-3-3  14-3-3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.1   0.00052       9.4      32     121 ..      59     145 ..      47     167 .. 0.73
   2 !   32.8   0.0   2.6e-12   4.7e-08     135     216 ..     233     314 ..     229     318 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.00052
                 HHHHHHHH.HHHHHHHHHHHCHHHHHHHCCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHCH..-SHHHHHHHHHHHHHHHHH CS
      14-3-3  32 ernlLsva.yKnvvgarRaswrvlssieqkeeskeekkvelikeyrekiekeLkeiceevlelldktlipka.tseeskvfylkmkgDyyRY 121
                 e  lLs + yK +  + R + + +++ + ++ ++     +   +y +++ + +  + +e l +++++++p + +  e kv  +k+++ +y  
  KKY23872.1  59 ENALLSSMlYKVLGLSVRLARKLVRARRLRKLDT-----TRDTKYVQQLYHHILWLSREGLVIVEQYILPMVsDYVELKVLSYKLRASFYHI 145
                 5666665514444445676666666643333333.....3568999***********************7543778**********999975 PP

  == domain 2  score: 32.8 bits;  conditional E-value: 2.6e-12
                 HHHHHHHHHHHHHHHHTTTGCC-HHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHCCHCCCCCS.TTTHHHHHHHHHHHHH CS
      14-3-3 135 aekakeaYeeAleiakkelqpthpirLglaLNySVflyeilnspekAcelakkafdeaiaeldelseesykdstlilqlLrd 216
                 + +a++++ +A  ++++ l+ +hp+rL++ L+y  f+y+ l++ e + ++ak+a+ +  ++ + ++++s +d+  ++ +L +
  KKY23872.1 233 VPSATSCFVTAAALSDQLLPGSHPLRLSVKLEYVAFMYDCLHDAEGSRRMAKRAIADVYNAAEGMDDDSFEDAAEMVSILGK 314
                 6678899999******************************************************************999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2424.71
//
Query:       KKY23873.1  [L=562]
Description: putative vacuolar endopolyphosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1199  (0.0668749); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.50
# Mc/sec: 3358.74
//
Query:       KKY23874.1  [L=751]
Description: putative f-box domain containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00052   19.8   0.0     0.0016   18.3   0.0    1.9  1  F-box     F-box domain


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   8.9e-08    0.0016       6      42 ..       6      42 ..       1      44 [. 0.91

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 8.9e-08
                S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHH CS
       F-box  6 LPsevlrhILerLplsdllalrrVSkgwrilidsdrl 42
                 P +v r+I ++L++ d+ +lr+V + + + + ++r+
  KKY23874.1  6 IPQDVFREIAQYLSFDDVKNLRLVNRQFASQLADVRF 42
                799*************************998888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 5029.62
//
Query:       KKY23875.1  [L=854]
Description: putative exo-beta-glucanase exg0 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-94  314.4  38.5    1.4e-83  280.0  10.0    4.4  4  Pectate_lyase_3  Pectate lyase superfamily protein
    7.7e-08   31.9   5.2    0.00042   19.9   0.2    3.3  3  End_N_terminal   N terminal extension of bacteriophage endosi


Domain annotation for each model (and alignments):
>> Pectate_lyase_3  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.0  10.0   1.5e-87   1.4e-83       6     215 .]       2     221 ..       1     221 [. 0.98
   2 ?    1.2   0.4      0.03   2.7e+02     158     211 ..     235     297 ..     222     301 .. 0.75
   3 ?   -1.8   0.5      0.26   2.3e+03     185     196 ..     366     377 ..     307     442 .. 0.56
   4 !   48.0   6.9   1.5e-16   1.3e-12       1      73 [.     486     553 ..     486     767 .. 0.84

  Alignments for each domain:
  == domain 1  score: 280.0 bits;  conditional E-value: 1.5e-87
                      GGT---EEEEE-HHHHHHHH..............HTSS-EEE-SEEEEESS-EEE-SSEEEEES-TTTEEEEE-TT-SS--SEEES-TTT-..- CS
  Pectate_lyase_3   6 dyGakgDGvtDdtaaiqkais........casatttgavVYfPaGtYlvsspiilksgvqLvGdgngrpvlkaaaafvgaglidgdpyvsggse 91 
                      dyGa+gDG tDdt ai++ais        c+s+t t+a+VYfP+GtYlvs+pii+++++q++Gd+ ++p++kaaa+f g+++id+dpy ++g++
       KKY23875.1   2 DYGATGDGTTDDTDAINSAISdggrcglgCDSSTVTPAIVYFPPGTYLVSTPIIQYYYTQFIGDAINVPTIKAAASFSGMAVIDADPYEDSGAN 95 
                      9****************************************************************************************8889* PP

                      EEEEEEEEEEEGGGG-SS---SSEEE.ES-EEEEEEEEEEES-SSEEE-SSS..---TT---SS--EEEEES-EEES-SS-SEEES-EEEEEES CS
  Pectate_lyase_3  92 aliatnnfyrqirnlkiditavapga.tgihwqtaqatslenvefemseasg..tkhqgifiengsggflndlvfsglgdigiavgnqqftvrn 182
                      +++++nnf+rqirn++id +++++++ +gihwq+aqatsl+n++f+m ++ g  +k+qgif++ngsggf++dl+f+g g++g+ +g+qqft+rn
       KKY23875.1  96 WYTNQNNFFRQIRNFIIDLKSMPMSSgAGIHWQVAQATSLQNIVFNMVQGGGdsNKQQGIFMDNGSGGFMTDLTFNG-GNYGAFLGSQQFTTRN 188
                      **********************8888799**********************999999********************.**************** PP

                      -EEE-S--SEEE-TT-EEEEEEEEEESSSEEEE CS
  Pectate_lyase_3 183 itfnnattgievlwgwgwtlknvkinncegGid 215
                      +tfnn++t+ +++w+w+wt+k+++in+c +Gi+
       KKY23875.1 189 LTFNNCNTALYMNWNWAWTFKSLSINDCSVGIN 221
                      *******************************96 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.03
                      E.ES-EEES-SS-SEEES.........-EEEEEES-EEE-S--SEEE-TT-EEEEEEEEEESSS CS
  Pectate_lyase_3 158 l.ndlvfsglgdigiavg.........nqqftvrnitfnnattgievlwgwgwtlknvkinnce 211
                      l  d+ f+g   igi ++             +v+n+ f++att+i  l+g+++   + ++ +++
       KKY23875.1 235 LvLDSKFTG-TSIGIITSrnadsipesGGTLIVKNVDFSGATTAIAGLDGSSILAGGSTVASWG 297
                      246889999.88888886688888887788899************9999888776666666555 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.26
                      EE-S--SEEE-T CS
  Pectate_lyase_3 185 fnnattgievlw 196
                      +++++ ++ +++
       KKY23875.1 366 IQGTSSAVAADS 377
                      222222222211 PP

  == domain 4  score: 48.0 bits;  conditional E-value: 1.5e-16
                      SEEGGGGT---EEEEE-HHHHHHHH......HTSS-EEE-SEEEEESS-EEE-SSEEEEES-TTTEEEEE-TT CS
  Pectate_lyase_3   1 frnVkdyGakgDGvtDdtaaiqkaiscasatttgavVYfPaGtYlvsspiilksgvqLvGdgngrpvlkaaaa 73 
                      f++Vk  GakgDG tDdtaaiq+++    + t+ ++VYf  G Y+++s+++ ++ +++vG+    p + a++ 
       KKY23875.1 486 FVSVKAAGAKGDGTTDDTAAIQNVL---NNATSDQIVYFDHGAYIITSTVKVPKDIKIVGEI--WPLIMASGT 553
                      79***********************...9999****************************97..565655443 PP

>> End_N_terminal  N terminal extension of bacteriophage endosialidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.6   9.6e-06     0.086       1      19 [.       5      23 ..       5      33 .. 0.90
   2 ?   -2.6   0.0      0.51   4.6e+03      49      67 .]     469     487 ..     459     487 .. 0.85
   3 !   19.9   0.2   4.7e-08   0.00042       1      26 [.     494     519 ..     494     536 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.6e-06
                    ---EEEEE-HHHHHHHHHH CS
  End_N_terminal  1 akGDGvtdDtdalsevlaa 19
                    a GDG tdDtda+++++++
      KKY23875.1  5 ATGDGTTDDTDAINSAISD 23
                    78**************998 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.51
                     EEE-SSTT--EEEE-BTSS CS
  End_N_terminal  49 fvyeRiaGqPLyYvseefi 67 
                      v+eR   q   Y s  f+
      KKY23875.1 469 AVFERAKPQYESYSSSSFV 487
                     599**99999999999986 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 4.7e-08
                     ---EEEEE-HHHHHHHHHHS-TTS-E CS
  End_N_terminal   1 akGDGvtdDtdalsevlaaapvgkki 26 
                     akGDG tdDt+a+++vl++a++++++
      KKY23875.1 494 AKGDGTTDDTAAIQNVLNNATSDQIV 519
                     89*******************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1180  (0.0658152); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.94u 0.39s 00:00:01.33 Elapsed: 00:00:00.56
# Mc/sec: 4613.87
//
Query:       KKY23876.1  [L=97]
Description: putative 40s ribosomal protein s25 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-36  122.8   3.3    6.2e-36  122.7   3.3    1.0  1  Ribosomal_S25  S25 ribosomal protein
     0.0011   18.8   0.1     0.0015   18.4   0.1    1.2  1  MarR_2         MarR family
     0.0034   17.1   0.1     0.0046   16.7   0.1    1.2  1  HTH_DeoR       DeoR-like helix-turn-helix domain
     0.0054   17.0   0.1     0.0069   16.7   0.1    1.2  1  Rrf2           Transcriptional regulator
  ------ inclusion threshold ------
       0.01   15.4   0.1       0.03   13.9   0.1    1.7  2  HTH_24         Winged helix-turn-helix DNA-binding
      0.027   13.8   0.1       0.03   13.6   0.1    1.1  1  EAP30          EAP30/Vps36 family
      0.076   12.7   0.0       0.11   12.2   0.0    1.3  1  GntR           Bacterial regulatory proteins, gntR family
      0.083   11.4   0.0      0.091   11.3   0.0    1.0  1  DUF1744        Domain of unknown function (DUF1744)


Domain annotation for each model (and alignments):
>> Ribosomal_S25  S25 ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.7   3.3   2.8e-39   6.2e-36      13     101 .]       4      92 ..       1      92 [. 0.95

  Alignments for each domain:
  == domain 1  score: 122.7 bits;  conditional E-value: 2.8e-39
  Ribosomal_S25  13 akaggkakkKKwskgkvkdklnnavlfdketydkllkevpkyklitpsvvserlkingslArraLreleekgliklvskhraqviYtra 101
                    a+a++ka +KKwskgkvkdk+++av++dk++ dkl k+v+ ykl+t++v+++rlkingslAr+aL++lee+g+ik+v+ h +  iYtra
     KKY23876.1   4 AAATKKAGRKKWSKGKVKDKAQHAVVLDKALSDKLNKDVQAYKLVTVAVLVDRLKINGSLARKALNDLEERGVIKKVVGHARGSIYTRA 92 
                    45777888*******************************************************************************95 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   6.5e-07    0.0015      22      62 .]      48      86 ..      32      86 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.5e-07
                EEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2 22 ltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62
                +tv+ l++rl++  s + ++l++L+++G + ++ g  ++R+
  KKY23876.1 48 VTVAVLVDRLKINGSLARKALNDLEERGVIKKVVG--HARG 86
                59******************************988..8885 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   2.1e-06    0.0046       9      51 ..      42      84 ..      35      87 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.1e-06
    HTH_DeoR  9 lkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGa 51
                ++    ++v  lv++l++    +R+ Ln Lee g+++++ G a
  KKY23876.1 42 VQAYKLVTVAVLVDRLKINGSLARKALNDLEERGVIKKVVGHA 84
                56667799******************************99976 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   3.1e-06    0.0069      24      66 ..      46      88 ..      27      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.1e-06
                C-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEE CS
        Rrf2 24 epvsseeiaerqnispsylekilakLrkaglvksvrGkgGGyr 66
                + v+++ + +r +i+ s ++k l+ L++ g++k v G+  G  
  KKY23876.1 46 KLVTVAVLVDRLKINGSLARKALNDLEERGVIKKVVGHARGSI 88
                45999********************************987765 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.94   2.1e+03      22      32 ..      33      43 ..      32      46 .. 0.78
   2 ?   13.9   0.1   1.4e-05      0.03      19      48 .]      49      78 ..      47      78 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.94
      HTH_24 22 eLAerlglSps 32
                 L+++l+  ++
  KKY23876.1 33 ALSDKLNKDVQ 43
                79999998776 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.4e-05
      HTH_24 19 sqreLAerlglSpstvnrrlkrLeeeGlIk 48
                + + L +rl +  s  ++ l+ Lee G+Ik
  KKY23876.1 49 TVAVLVDRLKINGSLARKALNDLEERGVIK 78
                6678899**********************8 PP

>> EAP30  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.3e-05      0.03     175     232 ..      24      77 ..       6      78 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.3e-05
       EAP30 175 tdqvevl.evakrlvsllaekssgggvtaselaeeeenlgwsvarakeaLeelereGll 232
                 ++++ vl ++++++  l ++ ++ + vt++ l++   +l+++ ++a++aL++le++G++
  KKY23876.1  24 AQHAVVLdKALSDK--LNKDVQAYKLVTVAVLVD---RLKINGSLARKALNDLEERGVI 77 
                 44434443222222..2233333367******55...5*******************86 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.8e-05      0.11      26      56 ..      49      79 ..      32      84 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.8e-05
                -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        GntR 26 sereLaaefgVsrttvReALrrLeaeglver 56
                ++  L+++++++ +  R+AL+ Le++g++  
  KKY23876.1 49 TVAVLVDRLKINGSLARKALNDLEERGVIKK 79
                677899*********************9975 PP

>> DUF1744  Domain of unknown function (DUF1744)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.1e-05     0.091     175     232 ..      18      75 ..      14      94 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.1e-05
     DUF1744 175 GlekDdklealslleelespeinnpgaYssvcveleirnLavntilqsalinelEgss 232
                 G+ kD++++a+ l + l+    +   aY+ v+v + +++L +n  l  + +n+lE   
  KKY23876.1  18 GKVKDKAQHAVVLDKALSDKLNKDVQAYKLVTVAVLVDRLKINGSLARKALNDLEERG 75 
                 66777755554444445555556689*****************************654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.48
# Mc/sec: 608.02
//
Query:       KKY23877.1  [L=218]
Description: putative heme steroid binding domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-12   46.7   0.0    3.7e-12   46.2   0.0    1.4  1  Cyt-b5    Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   2.1e-16   3.7e-12       1      58 [.      58     117 ..      58     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 2.1e-16
                 EHHHHTTTECTT...EEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGC CS
      Cyt-b5   1 tleelskhngkn...dlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhse 58 
                 t++el+k++g +   ++++a++g++YDvs +   + G++++++ +aG+Dat+   + ++ +
  KKY23877.1  58 TPAELAKYDGTDpslPVYLALNGTIYDVSAGRRTY-GPGGSYHYFAGRDATRGYVTGCFAQ 117
                 789******877789********************.****************988886433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1479  (0.0824921); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 1627.76
//
Query:       KKY23878.1  [L=639]
Description: putative carboxylesterase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-68  230.0   0.0      1e-67  229.2   0.0    1.3  1  COesterase     Carboxylesterase family
    8.8e-08   32.3   0.1    3.7e-07   30.2   0.1    1.9  1  Abhydrolase_3  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.2   0.0   1.2e-71     1e-67      24     497 ..     117     612 ..     101     626 .. 0.81

  Alignments for each domain:
  == domain 1  score: 229.2 bits;  conditional E-value: 1.2e-71
                 EEEEEEEEESSB---GGGTTS--BE----SSEEECBS---BESEECSSSSSCGHHCHHHBES---EEEEEEESSS..SSTTSSEEEEEEE--STTTS-B CS
  COesterase  24 evdaFlGiPYAepPvgelRFkkPepaepwtgvrdAtkfspaCpqnaeksekeekeleawvsEDCLyLnvytPkek..keakkklPVlVwihGggfqtgs 120
                 +   FlGiPYA  P   +RF  +   +   + ++At+++++C+q  +            +sE C +Ln+ tP      ++   +PV++wihGggf+ g+
  KKY23878.1 117 KSFRFLGIPYADEP---ERFHYSSLYSLTGQAIQATSYGSQCAQPSS------------GSEACHFLNIQTPYIPkvGSNADLRPVMFWIHGGGFTGGT 200
                 5678*********9...9*******888888*************995............89********997655443444455*************** PP

                 GCG..S-THHHHHHHTSEEEEE----HHHHH-B-SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSGGGTTSBSEEEE CS
  COesterase 121 ase..ydgsaLaaegnvivVtinYRlGvlGFlstgdeeapGNvGllDqvlALrWVkenIasFGGdpervtlfGesAGaasvsllllsplsrglfkraIl 217
                 + +   dg +La++++++vVt+nYRl  lGFl+    +++GN+G++Dq+ AL+W  +nIa+FGGdp ++t++GesAGa sv +ll sp + g ++ aI+
  KKY23878.1 201 GADplSDGGNLASREDIVVVTFNYRLSTLGFLAIPGTNITGNFGIQDQTIALQWTVNNIAFFGGDPGHITIVGESAGAGSVRVLLGSPAAIGKYQGAIS 299
                 *9999*****************************889************************************************************** PP

                 ES....--TT...STTTSBSH........HHHHHHHHHHHTTS-CSSHHHHHHHHHCS-HHHHHHCCGGSSSSSSTTC-SSS-B--SSSSSS-HHHHHH CS
  COesterase 218 qS....Gsal...spwaiqkk........arkrakklakkvgckassskelveclrsksaeelldaqekaleasssklvsfaPvvdgdflpekPeellk 301
                 +S    G++l   s +a++++           + +++ +++gc++s+  + +ecl + +a +l++  +      +++ v+ +  vd + l  +  ++  
  KKY23878.1 300 MSnlggGVSLglsSDYATTYSsyltipesYSLVGQAIFSEAGCNQSTLGSQIECLETVPALKLVELSTV-----ARYVVQDGVYVDTEQLVVSTRNA-- 391
                 *9776533332223444444456766556677889******************************9966.....66666666667776666333333.. PP

                 CGC..CSEEEEEEETTTTHHHHCCHSTTTSSSSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSTTTSSTCHHHHHHHHHHHHHHHHTHHHHHHHH CS
  COesterase 302 seg..kvplliGvnkdegllflaylldkeksvkkkeeklsesllkdelyleaekkeelseaikeeytdeadrddaeksrkallelltdvlfkapvlrta 398
                   +  +vp+++G+++d+g+ +++y  +    v+++ + l++sl ++ +y +    e +s  ++ +     + + +    +  ++++tdv+f++  ++t+
  KKY23878.1 392 --StaHVPVMFGIMRDDGASICTYPSNP---VTSELDGLEASLGISAAYAR----EVISSGLFPMLD---TGNLTLDAFNVSARVATDVQFRCIDQATV 478
                 ..134*****************965554...77778888888766666655....567777766664...5555566666778999*******988888 PP

                 HHHH..HTT-SEEEEEEE--STTSSS......T............TTGSSBTTTTHHHHTTGGGTSGCSS-HHHHHHHHHHHHHHHHHHHHSSTTS... CS
  COesterase 399 klha..srgspvYlYsfdyrnssskk......p............kwmgvvhgdeleyvfglpllekeeftkedeklsrkmmtywtnFaktgnPnk... 474
                  + +  ++  ++Y+Y+++    +  +      p                 vh+ ++  vfg+   + +   ++d  + +  + yw++F++ g+Pn    
  KKY23878.1 479 YAGTqtQAFPSAYFYQMNRGI-NGYDpnnvgnPpatpgypngnpnLPYFRVHAADMTWVFGNLAPNLT-RDADDLYFTQLASGYWAEFVRCGQPNPsmv 575
                 87763244445*****97655.33333555552677788899989666678**********9888777.6788***********************999 PP

                 ..............TTSS----B.TTTBEEEEESSSS CS
  COesterase 475 ..............eeeekWpkytkeeekylkinlkp 497
                               e++ +W++++  +  + ++++++
  KKY23878.1 576 yplvfrytktiqaiENSGPWEAVSGAQGYVEQLDYPA 612
                 9999999999999999999999987777777777665 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.1   4.1e-11   3.7e-07       1      83 [.     188     279 ..     188     287 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 4.1e-11
                    EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---T.......TTS-TTH..HHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHH CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlA.......PehpfPa..avedalaalrwlaeqawelgadpsrivlaGdSaGGn 83 
                    ++++HGGGf+ g+ + + +   +la++ ++vvv  +Yrl+       P + +     ++d   al+w +++ + +g dp +i+++G+SaG+ 
     KKY23878.1 188 MFWIHGGGFTGGTGADPLSDGGNLASREDIVVVTFNYRLStlgflaiPGTNITGnfGIQDQTIALQWTVNNIAFFGGDPGHITIVGESAGAG 279
                    689**************9999*****************985555556666665422689************99*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.51
# Mc/sec: 3786.70
//
Query:       KKY23879.1  [L=390]
Description: hypothetical protein UCRPC4_g02692 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-31  109.8   0.0    1.8e-31  109.4   0.0    1.0  1  Aminotran_5      Aminotransferase class-V
    7.9e-06   25.3   0.0    1.2e-05   24.7   0.0    1.1  1  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
      0.014   14.0   0.0      0.019   13.5   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   0.0     3e-35   1.8e-31      27     342 ..      29     348 ..      15     365 .. 0.88

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 3e-35
                  CCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STG.GGEEEESSHHH.HHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBE CS
  Aminotran_5  27 nanvhrsvhhlgkeatkaveearekvaelinaese.eeiiftsGtte.ainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipld 122
                  n+ +h + +h ++ + + + e+ + +++++++e+  ++  ++sG+++ +  lva +l    +pgd ++v ++++ a     ++  k+ ga+ + +++ 
   KKY23879.1  29 NSMGHYAESHVSMPFVNVFGETLSMLRKVFQTENPaSQPFVISGSGTlGWDLVAANL---AEPGDDVLVLHTGYFADS--FADCFKTYGANATQLKAP 121
                  5556668899999*******************9861556667999889*********...89****************..899999************ PP

                  TTSCBEGGGHHHH--.TTEEEEEEESBETTTTEB--HHHHHHHHHH.T.T-EEEEE-TTTTTTS---HHHHTESEEEEETTT.TTSSTT-EEEEEEHH CS
  Aminotran_5 123 eegeldldeleklln.ektklvaithvsnvtGtiqpveeigklakk.k.galvlvDaaqavghipidvkklgvDflafsghK.llgPtGiGvlyvrke 216
                   + + +ld++e++l+ +k+kl+++thv ++tG++ +++++ kl+++ + + lv+vD++ +vg  +i ++ +++D++   ++K +  P+G+++++++++
   KKY23879.1 122 IGDRPQLDAVEAALKeKKYKLLTVTHVDTSTGVLSELKSLSKLVRRvSpETLVVVDGVCSVGCEEIAFDSWDLDVVLTASQKaIGCPPGLSIVMCSER 219
                  **************8699****************************548*********************************6666************ PP

                  HHHTS....SS.STTSEEEEE...T.TEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTC CS
  Aminotran_5 217 llekl..eplllggemveevs...l.eettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlkslpgvrlygpdkaerr 308
                  + + +  +++ +g++  + v+   + +++  + +ps f   Tp++  i +l+++l  + +  l++  ++++e ++++++++++l+  +l  p+++++ 
   KKY23879.1 220 AMKTFeaRKTPPGSYFASFVNwvpImKNYE-NRKPSYFA--TPPTQLIHALHTTLTQVLSSPLSERFARHREISDKVKAAVAELGLKQL-APKPENQA 313
                  **9985545555655544444111545555.88999899..***********************************************9.779***** PP

                  BSEEEEEE.TTCSHHHHHHHHHHTTEEEEEE-TTT CS
  Aminotran_5 309 asivsfnf.kgvhaedvatlLdeegIavrsGhhca 342
                  ++++++ + +g+ + ++   L ++g+   +G h  
   KKY23879.1 314 HGMTAIYLpEGMTPPEILPNLLKKGVIFAGGLHKE 348
                  ********9999999999999999**999998865 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.9e-09   1.2e-05      70     301 ..      68     306 ..      47     314 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.9e-09
                    GEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-..THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT-- CS
  Aminotran_1_2  70 avvvgsGagaliealifllklnpgdeilvpdpty..asyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGt 163
                     v+ gsG+   + +++ l++  pgd++lv    y  +s+ ++++ +g+   + +   + + +  l+a+e+alke      k k++ v+ +   tG+
     KKY23879.1  68 FVISGSGTLGWDLVAANLAE--PGDDVLVLHTGYfaDSFADCFKTYGANATQLK--APIGDRPQLDAVEAALKEK-----KYKLLTVTHVDTSTGV 154
                    57778888888888888886..8888888777775679***********99999..678889***********94.....88************** PP

                    B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH...................... CS
  Aminotran_1_2 164 vatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgna...................... 237
                    +  l+ l kl++ +   + l++vD + ++++ +       +a+ + + + ++++   Ka G++    G  ++ +                      
     KKY23879.1 155 LSELKSLSKLVRRVSP-ETLVVVDGVCSVGCEE-------IAFDSWDLD-VVLTASQKAIGCPP---GLSIVMCseramktfearktppgsyfasf 238
                    **********999996.**************99.......999999988.55555569999987...76666555688888888888888888888 PP

                    ....HHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTEEEEC CS
  Aminotran_1_2 238 ....avvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLaelglkvla 301
                         + +  ++ + ++    +++l +a+ + l  +l     l+e+ +r+ + +++++++ aelglk la
     KKY23879.1 239 vnwvPIMKNYENRKPSYFAtpPTQLIHALHTTLTQVLSS--PLSERFARHREISDKVKAAVAELGLKQLA 306
                    866655555555555555588888888888888888854..88888888888888888888888877665 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.3e-06     0.019      70     200 ..      68     205 ..      24     226 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.3e-06
                      EEEESSHHHHHHHHHHTTS-TTEEEEEESTSS..HHHHHHHHHT.HHHTTCEEEEESTTSHHHHHHHCCT.TEEEEEEESS-TTTT----HHHH CS
  Cys_Met_Meta_PP  70 alavssGmaAiaaailallkaGdeivvsddlY..ggtqrllkkv.lkklgievkfvdtsdleelekaike.ntklvylEtptnpllkvvDieki 159
                       ++  sG+   +++  +l++ Gd+++v ++ Y  ++  + +k++ ++ +++++ + d  +l+++e+a+ke + kl+ +  +   +  +  ++++
       KKY23879.1  68 FVISGSGTLGWDLVAANLAEPGDDVLVLHTGYfaDSFADCFKTYgANATQLKAPIGDRPQLDAVEAALKEkKYKLLTVTHVDTSTGVLSELKSL 161
                      3455689999999***********98887776323344555554145588999999*************95667777777777777788999** PP

                      HHHHHHTT..-EEEEEGTTTHTTTS-GGG.GT-SEEEEETTTTT CS
  Cys_Met_Meta_PP 160 aklakkag..vlvvvDntfaspllqrplk.lgaDivvhSaTKyl 200
                      +kl++ ++  +lvvvD + + ++   +++ ++ D+v+ +  K +
       KKY23879.1 162 SKLVRRVSpeTLVVVDGVCSVGCEEIAFDsWDLDVVLTASQKAI 205
                      *****99888********99998888875368999999988866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2690.69
//
Query:       KKY23880.1  [L=439]
Description: putative asparagine synthase related protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.1e-16   58.8   0.2    1.1e-05   25.3   0.0    3.2  3  Asn_synthase  Asparagine synthase


Domain annotation for each model (and alignments):
>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   7.9e-05       1.4      19      52 ..     115     150 ..     100     162 .. 0.80
   2 !   21.4   0.0   9.5e-09   0.00017     119     148 ..     265     293 ..     260     298 .. 0.85
   3 !   25.3   0.0     6e-10   1.1e-05     210     258 ..     299     347 ..     291     355 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 7.9e-05
  Asn_synthase  19 pvGalLSGGlDSSliaalaarqsk..splktFsigf 52 
                   +v++l+SGGlD +++a la + ++  +++    ++f
    KKY23880.1 115 KVAILFSGGLDCTILARLAHEILDpkESIDLLNVAF 150
                   699*****************9988666666666666 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 9.5e-09
  Asn_synthase 119 vkvvLsGeGaDElfgGYpyfykaalsrsre 148
                    +v+LsG GaDElf+GY+ ++  a sr+ +
    KKY23880.1 265 ARVLLSGLGADELFAGYT-RHATAFSRQGY 293
                   68***************9.99998777655 PP

  == domain 3  score: 25.3 bits;  conditional E-value: 6e-10
  Asn_synthase 210 elyldlktllpgdllrkDrasmahglEaRvPflDhrlvevalrlppelk 258
                   el ld+++l + +l r Dr+  + + E+R+P+lD ++v++al+ p+ +k
    KKY23880.1 299 ELALDITRLGTRNLGRDDRIISHCSKEVRYPYLDEDFVKWALQAPVWEK 347
                   7899***************************************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3016.44
//
Query:       KKY23881.1  [L=675]
Description: putative guanine nucleotide exchange factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-30  103.3   0.0    1.2e-29  102.5   0.0    1.4  1  VPS9      Vacuolar sorting protein 9 (VPS9) domain
    3.1e-15   56.2   0.2    7.1e-15   55.1   0.2    1.7  1  DUF5601   Domain of unknown function (DUF5601)
    4.8e-09   35.7   0.0    2.8e-08   33.3   0.0    2.1  2  CUE       CUE domain


Domain annotation for each model (and alignments):
>> VPS9  Vacuolar sorting protein 9 (VPS9) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   2.1e-33   1.2e-29       4     103 ..     349     447 ..     346     448 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 2.1e-33
        VPS9   4 aseeLkklseaksPreKlkcllrtieeiteavskseegeslgaDdlLPiliyviikssppnlysnvqfikrFrsktllegeegYylttleaavefiesl 102
                 a++eL k++ ++ Pr+K+ c+l++++ i+ ++ k++++++++aD ++P+liyv+++++p++l+snvq+i rFr++++l ge+gYyl++l+ a++f+esl
  KKY23881.1 349 AQQELLKIKGYRAPRDKVICILNCCKVIFGLL-KNAKSKDTSADSFIPLLIYVVLHANPEHLVSNVQYILRFRNQDKLGGEAGYYLSSLSGAIQFVESL 446
                 89******************************.999999**********************************************************98 PP

        VPS9 103 e 103
                 +
  KKY23881.1 447 D 447
                 6 PP

>> DUF5601  Domain of unknown function (DUF5601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.2   1.2e-18   7.1e-15       1      65 []     208     272 ..     208     272 .. 0.98

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 1.2e-18
     DUF5601   1 KqiksfvrkisqrsisieelSemVqdFyqnlaerlnktplyktvsseavedlldeiEkyimtrlY 65 
                 K ++sf++++ ++++ + e++++++dF+ ++++++ +  ++++vs+ + +++ +++Ek++m+rlY
  KKY23881.1 208 KFLRSFLTEFGKKQWMVHEQVKIISDFLAFITNKMAQCDVWRDVSDTEFDNAKEGMEKLVMNRLY 272
                 6689************************************************************9 PP

>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.16   9.6e+02      29      41 ..     460     472 ..     456     473 .. 0.84
   2 !   33.3   0.0   4.7e-12   2.8e-08       4      41 ..     635     672 ..     632     673 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.16
                 TTHHHHHHHHHHC CS
         CUE  29 gnvEatinaLLeg 41 
                  nvE t+ a+ e 
  KKY23881.1 460 RNVEITVQAIAER 472
                 79*******9986 PP

  == domain 2  score: 33.3 bits;  conditional E-value: 4.7e-12
                 HHHHHHHHSTTS-HHHHHHHHHHCTTTHHHHHHHHHHC CS
         CUE   4 mletLkemFPdldeevIravLrasngnvEatinaLLeg 41 
                  +etL+ mFP+ld+++I +v r+++g+v ++++a+L +
  KKY23881.1 635 VVETLYGMFPNLDRDIIDDVVREKGGRVGLAVDACLAL 672
                 58*********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       821  (0.0457917); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.49
# Mc/sec: 4121.81
//
Query:       KKY23882.1  [L=144]
Description: hypothetical protein UCRPC4_g02695 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-40  138.9  16.6    2.4e-40  138.8  16.6    1.0  1  Vfa1             AAA-ATPase Vps4-associated protein 1
     0.0011   18.4   3.4     0.0013   18.2   3.4    1.0  1  DUF4407          Domain of unknown function (DUF4407)
     0.0041   15.8   5.4     0.0044   15.7   5.4    1.0  1  NPAT_C           NPAT C terminus
     0.0068   16.4   6.1      0.011   15.7   6.1    1.3  1  FlxA             FlxA-like protein
  ------ inclusion threshold ------
       0.02   14.9   0.1      0.021   14.9   0.1    1.1  1  DUF4192          Domain of unknown function (DUF4192)
      0.064   13.1   9.9      0.074   12.9   9.9    1.1  1  RR_TM4-6         Ryanodine Receptor TM 4-6
       0.11   13.3   6.3       0.23   12.3   6.3    1.5  1  ANAPC_CDC26      Anaphase-promoting complex APC subunit CDC26
       0.14   11.2   2.0       0.15   11.0   2.0    1.1  1  DUF913           Domain of Unknown Function (DUF913)
       0.37    9.5   8.8        0.4    9.4   8.8    1.1  1  NPR3             Nitrogen Permease regulator of amino acid tr
       0.52   10.7   7.2       0.66   10.4   7.2    1.3  1  RNA_pol_Rpc4     RNA polymerase III RPC4
       0.55    9.2   6.8       0.77    8.7   6.8    1.1  1  Type_ISP_C       Type ISP C-terminal specificity domain
       0.63    9.9  16.4       0.78    9.6  16.4    1.1  1  RPN2_C           26S proteasome regulatory subunit RPN2 C-ter
        1.7    7.3  11.3        2.1    7.1  11.3    1.1  1  Tim54            Inner membrane protein import complex subuni
        1.8    8.4  12.6        2.4    8.1  12.6    1.1  1  DASH_Spc19       Spc19
        2.2    8.6  16.0        3.1    8.1  16.0    1.1  1  OmpH             Outer membrane protein (OmpH-like)
        2.2    8.5  10.8       0.45   10.8   7.4    1.7  1  DUF5093          Domain of unknown function (DUF5093)
        2.3    8.4   9.6        2.9    8.0   9.6    1.2  1  CPSF100_C        Cleavage and polyadenylation factor 2 C-term
        2.6    8.1   7.0        3.2    7.8   7.0    1.1  1  RP-C_C           Replication protein C C-terminal region
        2.8    6.8   9.2        3.5    6.5   9.2    1.1  1  DUF3987          Protein of unknown function (DUF3987)
        5.1    6.2   8.1        6.4    5.9   8.1    1.1  1  TRAP_alpha       Translocon-associated protein (TRAP), alpha 
        5.6    4.2  11.3        6.8    3.9  11.3    1.0  1  FancD2           Fanconi anaemia protein FancD2 nuclease
        6.5    6.0   9.9        7.7    5.7   9.9    1.1  1  PPL5             Prim-pol family 5
        6.9    7.2  11.5         10    6.6  11.5    1.3  1  Afi1             Docking domain of Afi1 for Arf3 in vesicle t
        7.4    6.7  15.3         10    6.3  15.3    1.1  1  CENP-Q           CENP-Q, a CENPA-CAD centromere complex subun
        8.1    6.1   7.0         11    5.7   7.0    1.3  1  Connexin         Connexin
        8.5    5.2  16.5         10    4.9  16.5    1.0  1  NARP1            NMDA receptor-regulated protein 1
        8.8    7.4  14.7      6e+02    1.5  14.7    2.2  1  Rotamase         PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> Vfa1  AAA-ATPase Vps4-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.8  16.6   3.5e-43   2.4e-40       1     129 [.       3     130 ..       3     144 .] 0.80

  Alignments for each domain:
  == domain 1  score: 138.8 bits;  conditional E-value: 3.5e-43
        Vfa1   1 NlYtlRkVaekdakaCliCykpttsVLitednkkDffYvCesHLkDkqFatpivdeeeeeaakkkkeleeeiekvkkeyeekqkkkkekekkkkekdkk 99 
                 N+Y+lR+Va++++kaC+iCykptt VLit+dn kDffYvC+ HL+Dk+F+tp+++ ++e+a++k++ele++i++v +eyeekq++kk k k+k+++d+k
  KKY23882.1   3 NKYHLRTVADTASKACFICYKPTTKVLITPDN-KDFFYVCPGHLTDKGFCTPVTNPDAEAAKRKREELEKRIAEVTAEYEEKQRRKKAKAKEKSKDDDK 100
                 9*******************************.7**********************99999999999********************888887544455 PP

        Vfa1 100 dkdkkkekekdkkkekekeeekkkelkkae 129
                 dk+k+++++k+k+++ + e+ek+++ k   
  KKY23882.1 101 DKEKESKDSKSKDDDGDLEKEKNEKVKPLL 130
                 555555555555544443555555554444 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   3.4   1.9e-06    0.0013     177     248 ..      51     122 ..      30     127 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.9e-06
     DUF4407 177 gvaGkgpaakekkaqldaaqaelaelkakldatarlaalraelaeleaerakeraasqaaaaaddGllarle 248
                 +++   p a+++k++ +++++++ae++a+ ++++r+++++a+ ++ +++++ke++++++++++ddG l++++
  KKY23882.1  51 CTPVTNPDAEAAKRKREELEKRIAEVTAEYEEKQRRKKAKAKEKSKDDDKDKEKESKDSKSKDDDGDLEKEK 122
                 55666789999*******************************************************888765 PP

>> NPAT_C  NPAT C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   5.4   6.7e-06    0.0044     371     453 ..      46     127 ..      16     143 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.7e-06
      NPAT_C 371 lpkilsksevassrq.tavkesesekkvsavslsleslhkatAnKeNelekdsekqkkqetsklssgqqngslrnekeaaaslq 453
                 ++k  + + +  +++ ++ k +e ek+++ v    e +++ +  K  e++kd +k+k++e++  +s+ ++g l++ek+  + ++
  KKY23882.1  46 TDKGFCTPVTNPDAEaAKRKREELEKRIAEVTAEYEEKQRRKKAKAKEKSKDDDKDKEKESKDSKSKDDDGDLEKEKN--EKVK 127
                 56677778777777734558999****999999999999999999999*****9***99999999999******9993..3333 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   6.1   1.6e-05     0.011      43      99 ..      58     114 ..      52     116 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.6e-05
        FlxA  43 tkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaqekqqsekeekskskqegvnkps 99 
                 ++e  k +++++++ I  + a+ + +q+ ++ ka+ek++   ++k+k++++ ++k +
  KKY23882.1  58 DAEAAKRKREELEKRIAEVTAEYEEKQRRKKAKAKEKSKDDDKDKEKESKDSKSKDD 114
                 5677889******************************99999999998888776654 PP

>> DUF4192  Domain of unknown function (DUF4192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   3.2e-05     0.021     144     210 ..      62     131 ..      26     140 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.2e-05
     DUF4192 144 vegsReelearlapvega.aaraaqrraaeraaaaleralarprdaerr....sdpaevrraaleavraala 210
                 + ++Reele+r+a v+++ +  ++qrr  ++a+++ ++  +++++++++    +d+ ++ ++  e+v+ +l+
  KKY23882.1  62 AKRKREELEKRIAEVTAEyE--EKQRRKKAKAKEKSKDDDKDKEKESKDskskDDDGDLEKEKNEKVKPLLD 131
                 6789***********99844..44444445555555444444444433344657777777777777777665 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   9.9   0.00011     0.074      70     146 ..      45     127 ..      30     143 .. 0.46

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00011
                 XXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXXX CS
    RR_TM4-6  70 LgDlseteaeesptpelkkkla........eeeeaeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkkk 146
                 L+D +  ++ ++p +e+ k++         e  +++e++e+++ ++a+a+ek++ ++++ke+++k +++++++   e+e+++k k
  KKY23882.1  45 LTDKGFCTPVTNPDAEAAKRKReelekriaE--VTAEYEEKQRRKKAKAKEKSKDDDKDKEKESKDSKSKDDDGDLEKEKNEKVK 127
                 6777777777777755544444123222112..2222222222222222222222233333333332233333333333333333 PP

>> ANAPC_CDC26  Anaphase-promoting complex APC subunit CDC26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   6.3   0.00035      0.23      17      60 ..      78     122 ..      77     137 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00035
  ANAPC_CDC26  17 aeyederqrqkeqaaqqqrsqasastsqasdtdaddft.sedadp 60 
                  aeye+ ++r+k +a++++++ +++++++ +d++++d + + +   
   KKY23882.1  78 AEYEEKQRRKKAKAKEKSKDDDKDKEKESKDSKSKDDDgDLEKEK 122
                  79****999999999999999999888888887777665333333 PP

>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.0   0.00023      0.15     242     312 ..      10     115 ..       5     140 .. 0.45

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00023
      DUF913 242 vikmlarvvelgkekaakllved............................................assasskseasssssssetkeeek........ 288
                 v ++ ++ + ++ ++ +k+l+++                                            +      +e +            +        
  KKY23882.1  10 VADTASKACFICYKPTTKVLITPdnkdffyvcpghltdkgfctpvtnpdaeaakrkreelekriaevT------AEYE------------Ekqrrkkak 90 
                 56666666777777777777777777777777777777777776666666655554433332221110......1111............011122222 PP

      DUF913 289 ..ssededvemedaeeetesesdese 312
                   +++++d++++++e+++++++d ++
  KKY23882.1  91 akEKSKDDDKDKEKESKDSKSKD-DD 115
                 32111111112222111111111.11 PP

>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   8.8    0.0006       0.4      52     123 ..      60     123 ..      34     142 .. 0.43

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0006
        NPR3  52 kkskrkrssrskekkskesskksesssksesseekksskeseeseekesneeeeeeededdeesekeeeeke 123
                 ++ krkr++ +k+  + + + ++  +++++++++k++sk++++++ekes++++++++d d e+      ek+
  KKY23882.1  60 EAAKRKREELEKRIAEVTAEYEE--KQRRKKAKAKEKSKDDDKDKEKESKDSKSKDDDGDLEK------EKN 123
                 44555555544444433333222..22222222222222222222222222222222222222......122 PP

>> RNA_pol_Rpc4  RNA polymerase III RPC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   7.2     0.001      0.66      29      77 ..      74     122 ..      23     134 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.001
  RNA_pol_Rpc4  29 seaesqsaekakaeeeskaekasgaeaeekkskkksskkkkkkkskalk 77 
                    e +++ +ek++ ++++++ek+++++++++k++k+s++k+++++ +++k
    KKY23882.1  74 AEVTAEYEEKQRRKKAKAKEKSKDDDKDKEKESKDSKSKDDDGDLEKEK 122
                   2222223333333333333333333333333333333333333333333 PP

>> Type_ISP_C  Type ISP C-terminal specificity domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   6.8    0.0012      0.77      12      73 ..      55     122 ..      52     130 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0012
  Type_ISP_C  12 tnRDawvynfskeelekrikrlideyneevkrkk......kktkdstkikwsralkkdlkknkklefd 73 
                 tn Da + + ++eelekri+++++ey+e+ +rkk      +k++d++k k s++ k++ +++  ++ +
  KKY23882.1  55 TNPDAEAAKRKREELEKRIAEVTAEYEEKQRRKKakakekSKDDDKDKEKESKDSKSKDDDGDLEKEK 122
                 77788888999****************99999997776553333444444444444444444333333 PP

>> RPN2_C  26S proteasome regulatory subunit RPN2 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  16.4    0.0012      0.78      34     100 ..      60     125 ..      50     142 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG.---------------------------------- CS
      RPN2_C  34 ekkekekekvatAvLSttakakarakkkekekeeeekeedkmdvdeekeekekkekekkekekeeek 100
                 e+++ ++e +++ +  +ta   +++++k+++ +e++k++dk +++e+k++k+k+++ + ekek+ ek
  KKY23882.1  60 EAAKRKREELEKRIAEVTAEYEEKQRRKKAKAKEKSKDDDKDKEKESKDSKSKDDDGDLEKEKN-EK 125
                 5566777888888888888877776666666644455555555555555555555545454443.22 PP

>> Tim54  Inner membrane protein import complex subunit Tim54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  11.3    0.0031       2.1     189     260 ..      53     136 ..      46     143 .. 0.41

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0031
       Tim54 189 Pldkp............eepeeeeaeeeeeeeeeekeeeeeeeeeeeeekeeekeeekeeeeeeeekekkkkvpkpyispedYa 260
                 P+++p            e++ +e ++e ee+++++k++ +e++++++++ke+e++++k+++++ + +++k++++kp + +++++
  KKY23882.1  53 PVTNPdaeaakrkreelEKRIAEVTAEYEEKQRRKKAKAKEKSKDDDKDKEKESKDSKSKDDDGDLEKEKNEKVKPLLDSQAWD 136
                 666664333333322212222222222222222222222222233333334444444444444444555666677766666665 PP

>> DASH_Spc19  Spc19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  12.6    0.0035       2.4      79     143 ..      62     129 ..      52     133 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0035
                 HHHHHHHHHHHHHHHHHHHHH......HHHHT-XXXXXXXXXXXX....XXXX...XXXXXXXXXXXX CS
  DASH_Spc19  79 lerreetLkaklelqegrlsnaesskkeeeeseeskeeeeeeenkeeekskkk...ltkeelerlkkL 143
                  +r++e+L+++++     +++++++kk++++++++++++ +e++++++ksk++   l+ke+ e++k L
  KKY23882.1  62 AKRKREELEKRIAEVTAEYEEKQRRKKAKAKEKSKDDDKDKEKESKDSKSKDDdgdLEKEKNEKVKPL 129
                 45666666666666666666655555555555544444444444444444433566888888887765 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  16.0    0.0047       3.1      27      96 ..      61     131 ..      56     134 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0047
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHH.HHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHH CS
        OmpH  27 kfkklqaeleakekelqklqeelqkkakklekeekeqe.lqkkeqelqqkqqqka.qelqkkqqellkpild 96 
                  +k+ ++ele++ +e+++++ee q+++k++  +ek ++  ++ke+e +++++++  ++l+k+++e +kp+ld
  KKY23882.1  61 AAKRKREELEKRIAEVTAEYEEKQRRKKAK-AKEKSKDdDKDKEKESKDSKSKDDdGDLEKEKNEKVKPLLD 131
                 457788999999999999999998777775.4444444588888888886666668*************987 PP

>> DUF5093  Domain of unknown function (DUF5093)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   7.4   0.00068      0.45      88     126 ..      61      99 ..      23     103 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00068
     DUF5093  88 seltdvkelekeldeameeyektekskkkkkKklveded 126
                  +  + +elek ++e   eye+++++kk k K++ +d+d
  KKY23882.1  61 AAKRKREELEKRIAEVTAEYEEKQRRKKAKAKEKSKDDD 99 
                 3445679***************************99998 PP

>> CPSF100_C  Cleavage and polyadenylation factor 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   9.6    0.0044       2.9      21      89 ..      73     132 ..      53     143 .. 0.49

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0044
   CPSF100_C  21 vatvtgeleieeeaeeaeeeekeeeeeeeeeeeeeeeaskkqklaeksekeaseeeseekkeslptldv 89 
                 +a vt+e e         ++  ++++++e++++++++++k++k  +ks++++ + e+e+++++ p+ld 
  KKY23882.1  73 IAEVTAEYEE--------KQRRKKAKAKEKSKDDDKDKEKESKD-SKSKDDDGDLEKEKNEKVKPLLDS 132
                 5566666651........11222222222222222222222222.223334444444455555567765 PP

>> RP-C_C  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.0    0.0049       3.2      20      82 ..      57     122 ..      53     143 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0049
      RP-C_C  20 atlaeleelleelealreevenalesalkaenssanesqnerhiqnsnpdsssese...paseker 82 
                 ++++  ++  eele+  +ev++ +e+++++++++a+e+ +++++ + ++ ++s+s+      eke+
  KKY23882.1  57 PDAEAAKRKREELEKRIAEVTAEYEEKQRRKKAKAKEKSKDDDKDKEKESKDSKSKdddGDLEKEK 122
                 56777788899*************999999999999775554444444422222221111112111 PP

>> DUF3987  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   9.2    0.0053       3.5      49     109 ..      48     107 ..      46     131 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0053
     DUF3987  49 KSpvdklvlrpleeieaelreeyeeelkeyeaekkaweaelealekkaakakeakaeeala 109
                 K+ ++  v++p  e+ ++ ree e++++e  ae ++ +++++a +k+  k++++++e++ +
  KKY23882.1  48 KGFCT-PVTNPDAEAAKRKREELEKRIAEVTAEYEEKQRRKKAKAKEKSKDDDKDKEKESK 107
                 66666.6777777777777777777777777777777777776666655555333333222 PP

>> TRAP_alpha  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   8.1    0.0096       6.4      24      74 ..      59     111 ..      45     130 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0096
  TRAP_alpha  24 vaaaaaeedevddelvdveaedeeveeeeeeeeeeee..eeeedeeelkaspd 74 
                 ++aa+++ +e+++ +++v+ae ee+++ ++ + +e++  +++++e+e+k s++
  KKY23882.1  59 AEAAKRKREELEKRIAEVTAEYEEKQRRKKAKAKEKSkdDDKDKEKESKDSKS 111
                 45667777889999999988555555444444444441133333334443333 PP

>> FancD2  Fanconi anaemia protein FancD2 nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  11.3      0.01       6.8     835     910 ..      49     125 ..      44     137 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.01
                 S----SS-STT--------XX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      FancD2 835 dyvPplanfdsetldvlpsss.aavaakkkkkekagkkrkadaskassadksqkeeaseaeeseseksqlekekekk 910
                 ++  p++n d+e++++  ++    +a   ++ e++++++ka+a  +s  d + ke++s+  +s+ +  +lekek++k
  KKY23882.1  49 GFCTPVTNPDAEAAKRKREELeKRIAEVTAEYEEKQRRKKAKAKEKSKDDDKDKEKESKDSKSKDDDGDLEKEKNEK 125
                 67889999999988776655414455555566667777788777778888888888888888888889999999885 PP

>> PPL5  Prim-pol family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   9.9     0.012       7.7     182     240 ..      63     120 ..      44     134 .. 0.54

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.012
        PPL5 182 akgveeveeksskkkskekkkklkkktsrkkkkegkkekesekeeededeeddlsdlvn 240
                 +++ ee+e+   +   + ++ k+++k+++ k+k+++++k++eke++d++++dd  dl +
  KKY23882.1  63 KRKREELEKRIAEVTAEYEE-KQRRKKAKAKEKSKDDDKDKEKESKDSKSKDDDGDLEK 120
                 22233323333333333233.33333333334444555666666777778888777754 PP

>> Afi1  Docking domain of Afi1 for Arf3 in vesicle trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  11.5     0.015        10      70     115 ..      79     126 ..      52     134 .. 0.38

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.015
        Afi1  70 knklekrkkkksededdvdeedeeeeddnedlde...lskdeeekageg 115
                 +++ ++r+kk +  +++ +++d+++e++++d ++    ++ e+ek+++ 
  KKY23882.1  79 EYEEKQRRKKAKA-KEKSKDDDKDKEKESKDSKSkddDGDLEKEKNEKV 126
                 2222222111111.22222222222222222211111233444433444 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  15.3     0.016        10      63     136 ..      60     130 ..      58     134 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.016
      CENP-Q  63 erdyeaLreLeknakaeare.rkeklkkehvllqesdseelslleassdevlgeasgtvfsdlepeldeellpll 136
                 e  +++ +eLek +   ++e ++++++k+ +  ++s++++++++++s+d    ++s+ +  dle+e+ e+++pll
  KKY23882.1  60 EAAKRKREELEKRIAEVTAEyEEKQRRKKAKAKEKSKDDDKDKEKESKD----SKSKDDDGDLEKEKNEKVKPLL 130
                 67788999************55556666555555555555555555554....4467788899999999999987 PP

>> Connexin  Connexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.0     0.016        11     118     146 ..      81     109 ..      50     138 .. 0.41

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.016
    Connexin 118 eeekkkkkekkkkkkkeeekekkkeegkr 146
                 ee++++kk k+k+k+k+++k+k+ke++++
  KKY23882.1  81 EEKQRRKKAKAKEKSKDDDKDKEKESKDS 109
                 11111111111111111111111111111 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  16.5     0.015        10     390     467 ..      57     126 ..      43     137 .. 0.41

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.015
                 TTGGG---HHHHHT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--.......-------------S-SSSTTTT- CS
       NARP1 390 pkakeeekeeaksaelseaerkklrkkakkaekkaekeeaekaekekekkaaekkakkedeeakkededplgekLvkt 467
                 p+a+ +++++++ ++  ++    +++k++++++ka++++++ +++        k+++++d+++k +d d+  ek +k+
  KKY23882.1  57 PDAEAAKRKREELEKRIAEVTAEYEEKQRRKKAKAKEKSKDDDKD--------KEKESKDSKSKDDDGDLEKEKNEKV 126
                 333333333333333333333333334444433333333332222........2223333333333333333333333 PP

>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5  14.7       0.9     6e+02       7      57 ..      58     108 ..      52     142 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.9
                 CCSE----HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEE CS
    Rotamase   7 kekasekeraeakakaeeileqlksgedtFeelArkySddknsakngGdlg 57 
                 + +a +++r+e ++++ e+ ++ ++++++ ++ A+++S+d+++ k++ + +
  KKY23882.1  58 DAEAAKRKREELEKRIAEVTAEYEEKQRRKKAKAKEKSKDDDKDKEKESKD 108
                 455889999*************99999999999999999999877665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3075  (0.17151); expected 358.6 (0.02)
Passed bias filter:                     1083  (0.0604049); expected 358.6 (0.02)
Passed Vit filter:                       246  (0.0137208); expected 17.9 (0.001)
Passed Fwd filter:                        46  (0.00256568); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.47
# Mc/sec: 912.96
//
Query:       KKY23883.1  [L=391]
Description: putative ada hat complex component 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.011   15.6   0.2      0.024   14.5   0.2    1.6  1  HHH       Helix-hairpin-helix motif
       0.07   13.0   6.7       0.15   11.9   6.7    1.5  1  CNDH2_C   Condensin II complex subunit CAP-H2 or CNDH2, C-ter
        1.2    8.1  14.5        2.3    7.2  14.5    1.4  1  Pes-10    Pes-10
          2    6.5  13.2        2.9    6.0  13.2    1.2  1  Nop14     Nop14-like family
         10    5.4  16.8         15    4.8  16.8    1.3  1  BUD22     BUD22


Domain annotation for each model (and alignments):
>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.2   6.7e-06     0.024       5      30 .]     125     150 ..     123     150 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.7e-06
                 HHTSSHHHHHTSTT-SHHHHHHHHHH CS
         HHH   5 lipasreeLlalPGVGpktAeaIlsy 30 
                 +i a ++ L al+GVGp+t   Ils+
  KKY23883.1 125 DILAALKTLDALKGVGPATGSLILSI 150
                 56688999***************996 PP

>> CNDH2_C  Condensin II complex subunit CAP-H2 or CNDH2, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.7   4.1e-05      0.15      40     167 ..     179     301 ..     167     319 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.1e-05
     CNDH2_C  40 gsiklqeflsalseklqavkeekkaekkgpafadeleylyqkeakerskarrklareeklkqalleeeeaeeeeevdeqeddddneaedgvdddddfgi 138
                  ++kl+  ++++++ l+++ + +k+ +k pa a  le+++   a++  ++r   ++ + lk + ++++  ++ e  +e  d d ++ +d+ dd+dd   
  KKY23883.1 179 SEVKLKYNVKEYEQLLNEFGDMRKRLQKEPAPAWMLEKVAFVLARQMVAHRAGDTKSSRLKANETKRKAPDDGEVANEVIDSDVEGSADDDDDNDD--- 274
                 345677778888888888888888888888888888998888888888888887776777666666666666655555544444444433333322... PP

     CNDH2_C 139 eleeeeddlkeseeeeeeeeeeeltYeeL 167
                    e edd+++++ +e ee+++++ +eeL
  KKY23883.1 275 --DEGEDDMESEDGMEAEENMSSQGFEEL 301
                 ..234557777777778888899999987 PP

>> Pes-10  Pes-10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  14.5   0.00064       2.3     165     228 ..     254     318 ..     237     343 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00064
      Pes-10 165 keeivdEdleeeeeedeedseedd.ddiededeedesssstdsgiesedeElveereeeeeeeae 228
                  +e++d d e ++++d ++ +++  dd+e+ed  +++++    g+e+  + + ee  +e +++ e
  KKY23883.1 254 ANEVIDSDVEGSADDDDDNDDDEGeDDMESEDGMEAEENMSSQGFEELGDDVPEEITDEDRKRYE 318
                 5899******999999977777778********************99888777776666665543 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  13.2   0.00081       2.9     346     424 ..     237     319 ..     199     348 .. 0.42

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.00081
       Nop14 346 eeeeededdfeedddlveseseeee..eeeeedeeeeedeeeee.eeeededdlsdlese.....eeeeedeleeelleeekkaaee 424
                 +++ ++ + +  dd +v++e  +++   + ++d+++++de e++ e+e+  + +++++s+          d++ ee+++e++k+ e+
  KKY23883.1 237 RLKANETKRKAPDDGEVANEVIDSDveGSADDDDDNDDDEGEDDmESEDGMEAEENMSSQgfeelG----DDVPEEITDEDRKRYEN 319
                 223333333333333333333332222112222222222222221222212222222222322221....22233332222222222 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  16.8    0.0041        15     151     232 ..     233     364 ..     186     391 .] 0.44

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0041
       BUD22 151 kkkkkkkkkkkeeeeeeesdkeeesedsedeekeeseddeeeeeededdedaee...................deedeeaeerelaqydgllasddede 230
                 +k+++ k+++++ ++ ++ + ++e  ds+    e s+dd++++++de+++d e                    d+  ee ++++ ++y++         
  KKY23883.1 233 TKSSRLKANETKRKAPDDGEVANEVIDSDV---EGSADDDDDNDDDEGEDDMESedgmeaeenmssqgfeelgDDVPEEITDEDRKRYEN--------- 319
                 222222222222222122333333333333...333333333333333333332111112223333444444433333333333333333......... PP

       BUD22 231 d...........................................e 232
                 +                                           +
  KKY23883.1 320 GisdegrkskvaasevflrrllveaegrqvafdngsdipifgdpN 364
                 022222224455555555555555555555555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       864  (0.0481901); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.35s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 2348.24
//
Query:       KKY23884.1  [L=467]
Description: putative mitochondrial cytochrome b2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.3e-108  363.2   0.0   1.6e-108  362.8   0.0    1.1  1  FMN_dh        FMN-dependent dehydrogenase
    4.2e-18   65.3   0.0    9.3e-18   64.1   0.0    1.6  1  Cyt-b5        Cytochrome b5-like Heme/Steroid binding domain
    2.4e-05   23.7   0.0    3.7e-05   23.0   0.0    1.2  1  Glu_synthase  Conserved region in glutamate synthase
    2.8e-05   23.7   0.0    4.4e-05   23.0   0.0    1.2  1  NMO           Nitronate monooxygenase
    0.00017   20.7   0.2    0.00051   19.2   0.0    1.9  2  IMPDH         IMP dehydrogenase / GMP reductase domain
    0.00063   19.1   0.0        0.2   10.9   0.0    2.2  2  ThiG          Thiazole biosynthesis protein ThiG


Domain annotation for each model (and alignments):
>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.8   0.0  5.5e-112  1.6e-108       1     320 [.     121     435 ..     121     438 .. 0.93

  Alignments for each domain:
  == domain 1  score: 362.8 bits;  conditional E-value: 5.5e-112
                 HHCCS-HHHHHHHH--STTSHHHHHHHHGGGGEEE---SSSS-SS-B--EEETTEEESSSEEE--BSTGGGTSTTHHHHHHHHHHHHTS-EEEETT-SS CS
      FMN_dh   1 ArkrlpkkafayvaggagdevtlrenraaferirlrprvlrdvskvdlsttllGqklslPvliaPvglaklahpdgelalaraaakagipfvlstvast 99 
                 A+++ p+k++a+++++a+d +t + nr+ ++ri +rprv+rdvs+vd++tt+lGq++s+P+++aP+++ kl+hp+ge  +a a+a+ gi++++st++s+
  KKY23884.1 121 ASETAPAKTWAFYSSAATDLITRDLNRSLYNRIFFRPRVMRDVSQVDTTTTILGQSVSSPFMVAPAAMVKLIHPEGEKGIATACASKGIIQCISTNSSF 219
                 78899********************************************************************************************** PP

                 -HHHHHHHHT.T-EEEEEE-CSSHHHHHHHHHHHHHC.TESEEEEESSTSS---BHHHHHCT--BSTT-T.G.TTGGGSTSGSCCTTH..THHHHHHCC CS
      FMN_dh 100 sleevaaaae.gplwfqlyvpkdrelteellkraeaa.gykalvltvDtpvlgkRerdlrngfslppklklrnllqelakpewaaealkkasaaaefvg 196
                 +l e++++ + +p++fqlyv+kdr ++e+ll++++++ ++ka+++t+D++++gkRe d+r++  + ++++++++ +++ + +   ++        +++g
  KKY23884.1 220 PLTEICSEVPdHPFFFQLYVNKDRPKSEALLQQINSLpNVKAIFVTCDAAMAGKREGDERVK--ADESVGVAMTDSKAKNDKKGGSYG-------RLMG 309
                 *******75526************************99***********************5..555555444444444444444444.......99** PP

                 CHB-TC--HHHHHHHHHHHSSEEEEEEE-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCHHHHHHHH.....SS-EEEESS--SHHHHHHHHHT CS
      FMN_dh 197 kqldpsltwddikwlreqtklplvvKGvltaedakraveaGvdgivvSNHGGRqldgapatidvLpeiveavgg...rievlvDgGirrGsDvlkAlal 292
                  ++d++l+w+di+wlr++tklplv+KG++ta+dak+a+e+G dgi++SNHGGR+ld++p++i +L ei +  ++   ++e++vDgG+rrG+D+lkAl+l
  KKY23884.1 310 GYIDNKLNWNDIAWLRKNTKLPLVLKGIMTAADAKLAAEYGLDGILLSNHGGRNLDTSPPAIITLLEIHKLFPEvldQLEIFVDGGVRRGTDILKALCL 408
                 ********************************************************************7777654549********************* PP

                 T-SEEEESHHHHHHHHHHHHHHHHHHHH CS
      FMN_dh 293 GAdavllGRpflyglaagGeeGvervle 320
                 GA++v+lGRpfl++ a +G+eGve++++
  KKY23884.1 409 GAKGVFLGRPFLFA-AGYGQEGVEHLID 435
                 **************.789*******997 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   3.1e-21   9.3e-18       2      73 ..       9      80 ..       8      81 .. 0.95

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 3.1e-21
                HHHHTTTECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHG.GEEEEE CS
      Cyt-b5  2 leelskhngkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkk.ylvGkl 73
                 ee+skh +++d+w++i++++ D+++f+ +hpGg+++ilky G+Date  + + h ++++++ l+   ++G +
  KKY23884.1  9 VEEVSKHSTDQDCWLVIDNEIWDLTEFAPQHPGGAAIILKYGGRDATEPYNEI-HAPSIIRDTLNPsKHIGSV 80
                69***************************************************.****999999998999876 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.2e-08   3.7e-05     254     311 ..     369     424 ..     364     433 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.2e-08
                   -HHHHHHHHHHHHHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SHHHHHHTT CS
  Glu_synthase 254 PlelalaevdqtlkeeglrdrvsliadGglktgadvvkalalGAdavgigtaalialg 311
                   P ++ l e+++   e  + d++++++dGg++ g+d++kal lGA  v +g+  l+a g
    KKY23884.1 369 PAIITLLEIHKLFPE--VLDQLEIFVDGGVRRGTDILKALCLGAKGVFLGRPFLFAAG 424
                   677777777776654..5699**********************************998 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.5e-08   4.4e-05     138     228 ..     332     422 ..     318     433 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.5e-08
         NMO 138 vliptissvkearkvearGaDalivqGpeaGGhqG...tpevgd.kglfaLvpqvldavdiPviAaGGiidrrgvaaaLalGAsgvqigtrfLlt 228
                 +++  i ++ +a+ +++ G D + +  ++ GG +     p++ +  + ++L p+vld ++i     GG+ ++ ++  aL+lGA+gv +g  fL +
  KKY23884.1 332 LVLKGIMTAADAKLAAEYGLDGILL--SNHGGRNLdtsPPAIITlLEIHKLFPEVLDQLEI--FVDGGVRRGTDILKALCLGAKGVFLGRPFLFA 422
                 56777889999**********9999..5788887743223444478889999999998886..559**************************987 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.98   2.9e+03      20      68 ..     165     218 ..     155     226 .. 0.65
   2 !   19.2   0.0   1.7e-07   0.00051     207     239 ..     387     419 ..     313     429 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.98
                 GSB--EESSTTEEESSSEEE-SSTTT......-SHHHHHHHHHTTSEEEE-SSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  20 evdlktkltkkiklniPlvsaamdtv......tesemAialareGgigvihknls 68 
                 +vd++t++  + +++ P++ a+  +v       e+ +A+a a +G i +i  n s
  KKY23884.1 165 QVDTTTTILGQ-SVSSPFMVAPAAMVklihpeGEKGIATACASKGIIQCISTNSS 218
                 55555555543.5566666555444422333347888999999998888887765 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.7e-07
                 T-EEEEES---SHHHHHHHHHTT-SEEEESCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 207 gvpviaDGGikysgdivkAlaaGadavmlGsll 239
                 + ++  DGG++   di kAl++Ga+ v lG+ +
  KKY23884.1 387 QLEIFVDGGVRRGTDILKALCLGAKGVFLGRPF 419
                 578999************************854 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   6.8e-05       0.2     165     204 ..     319     357 ..     310     363 .. 0.89
   2 !    5.9   0.0    0.0023         7     175     203 ..     387     415 ..     370     422 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.8e-05
                 HHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEES CS
        ThiG 165 ealkiiieeakvPvivDAGigspsdaaqamelGadavlln 204
                 + +  +++++k+P+++  Gi ++ da  a e+G+d++ll 
  KKY23884.1 319 NDIAWLRKNTKLPLVL-KGIMTAADAKLAAEYGLDGILLS 357
                 5688999******999.5********************85 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0023
                 SS-BEEES---SHHHHHHHHHTT-SEEEE CS
        ThiG 175 kvPvivDAGigspsdaaqamelGadavll 203
                 ++ + vD G+++ +d+ +a+ lGa++v+l
  KKY23884.1 387 QLEIFVDGGVRRGTDILKALCLGAKGVFL 415
                 67799**********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 2922.62
//
Query:       KKY23885.1  [L=317]
Description: putative deoxyribonuclease tatd [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-48  165.9   0.0    1.4e-48  165.5   0.0    1.1  1  TatD_DNase  TatD related DNase
  ------ inclusion threshold ------
       0.23   11.2   0.4        7.7    6.4   0.0    2.3  2  GP57        Phage Tail fiber assembly helper gene product 57


Domain annotation for each model (and alignments):
>> TatD_DNase  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.5   0.0   1.6e-52   1.4e-48      12     254 ..      31     307 ..      20     308 .. 0.90

  Alignments for each domain:
  == domain 1  score: 165.5 bits;  conditional E-value: 1.6e-52
                 CTTTHHHHHHHHHHTTEEEEEEE-SSGGGHHHHHHHHTT.TTTEEEEE---GGGGGC......C.CCHHHHHHHH..HHCCCTSEEEEEEEEEET-CCC CS
  TatD_DNase  12 feedreeileraeeagvaavvvvgtsskdskavlelakkypnkvyavlGiHPnevde......asedlleelkel..anvkhskvvaiGeiGLDyysre 102
                  ++d  ++++ra++ g ++++v+g+s+++s++v++l+++y   +ya++G+HP++++e        +++l+ l+ l  +      vva GeiGLDy +  
  KKY23885.1  31 HDDDLNDVIQRAKDVGCSKFMVTGSSLTESEHVVDLVAQYHC-CYATVGVHPCSSTEfekapgGPQSVLDGLRTLamKGKGAGYVVAFGEIGLDYDRLF 128
                 36789999*********************************8.*************9888876566777888887533446789***********8777 PP

                 CCGHHHHHHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHHHHCGGCCS.EEEETT--S-HHHHHHHHHTTEEEEE-GGGGTTTTHHHHHHHHHS-GGGE CS
  TatD_DNase 103 estkeaqeevFeeqlrlAkelklplviHlrkaeedlleilkeaaeaka.kvvlHsfsgsaeeakkflklgyyislsglltfknakelrelvkavpldrl 200
                  ++ke q ++F++ql+lA el+lpl++H r+a ed+ ++l    ++   ++ +Hsf+gs+ee+k+++++g+ i+++g++++  ++e  e+vk++pl+rl
  KKY23885.1 129 LAPKETQLKAFQQQLDLAIELELPLFLHMRAASEDFQRVLAPRLDRLPrRGLVHSFTGSIEEMKMLVDQGFDIGVNGCSMK--TEENVEVVKHIPLERL 225
                 8999************************************998755557****************************8777..8899************ PP

                 EE---TTSSEE...........................CCCTT.SE--GGGHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  TatD_DNase 201 LiETDaPyltp...........................kpyrg.krnepanvayvveklaelkaltleelaeitaeNakrlf 254
                  iETD P+++                            k +    rnep ++a+v+ ++a++k++++eel e+t++N+ ++f
  KKY23885.1 226 QIETDGPWCEMrpshasskylddapdlrikwvkkerwqKGMMVkGRNEPVTIAHVAHAVAKIKGIPVEELCEATWNNSILMF 307
                 *********9999*********99999999998887773333449*********************************9988 PP

>> GP57  Phage Tail fiber assembly helper gene product 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0   0.00085       7.7      48      69 ..     200     221 ..     188     225 .. 0.85
   2 ?    2.6   0.1     0.012   1.1e+02      41      67 ..     276     301 ..     266     304 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00085
        GP57  48 avGitGdtikveeiveavknlt 69 
                  +G+ G ++k ee ve vk + 
  KKY23885.1 200 DIGVNGCSMKTEENVEVVKHIP 221
                 589****************875 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.012
        GP57  41 tlaeiaravGitGdtikveeiveavkn 67 
                 t+a +a av      i vee+ ea  n
  KKY23885.1 276 TIAHVAHAVAKI-KGIPVEELCEATWN 301
                 89999**99743.4599******9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2134.43
//
Query:       KKY23886.1  [L=243]
Description: putative tyrosine phosphatase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-38  131.9   0.0    2.2e-38  131.4   0.0    1.1  1  Y_phosphatase2   Tyrosine phosphatase family
    6.5e-10   39.4   0.0    7.3e-10   39.2   0.0    1.1  1  Y_phosphatase3   Tyrosine phosphatase family
    3.9e-07   29.9   0.1    5.3e-07   29.5   0.1    1.2  1  DSPc             Dual specificity phosphatase, catalytic doma
    0.00099   18.7   0.1     0.0015   18.2   0.1    1.3  1  Y_phosphatase    Protein-tyrosine phosphatase
  ------ inclusion threshold ------
      0.018   15.1   0.0      0.028   14.5   0.0    1.3  1  PTPlike_phytase  Inositol hexakisphosphate
        0.1   11.5   0.0       0.15   10.9   0.0    1.2  1  Myotub-related   Myotubularin-like phosphatase domain
       0.24   11.4   0.0       0.44   10.5   0.0    1.4  1  DUF3338          Domain of unknown function (DUF3338)


Domain annotation for each model (and alignments):
>> Y_phosphatase2  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.4   0.0   8.7e-42   2.2e-38       4     152 ..      51     199 ..      50     209 .. 0.97

  Alignments for each domain:
  == domain 1  score: 131.4 bits;  conditional E-value: 8.7e-42
                     -TT-EEEETTEEEESS--HHHHHHHHHCT-SEEEE-SSS---HHHHHHHHHCT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE- CS
  Y_phosphatase2   4 plnFsaveselyrssyprasnfsflksLkLktiislspeeesqdelqfleeekiklyhiaiesnkeelveiksdllkkalklllnkenypvllhc 98 
                     p nF  + ++l+rssyp  + fs l+s   ktii l p +  +++  f++++ i+ ++i++  nk ++v    + ++ ++k+++n++n+pvl+hc
      KKY23886.1  51 PVNFHLIGPGLFRSSYPLMNHFSILESYGFKTIITLVPGDILEENRVFFKNHGINHHQIHVVANKVSDVYPSAETISSIIKIMMNRANHPVLIHC 145
                     89********************************************************************************************* PP

                     SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHHHHCCC--HHHHHHHHC---HHHH CS
  Y_phosphatase2  99 krGkhrtglvigclRklqkWslasilnEyrrFsgskkrivdeefienfdselev 152
                     ++Gkhrtg+v ++ R+  +W+l   ++Ey+++++ k+r +d++fi  fd++  +
      KKY23886.1 146 NKGKHRTGCVAAIFRRCTGWPLEACIEEYEKYAALKARDLDKAFISRFDVKELK 199
                     *************************************************98766 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   2.9e-13   7.3e-10     105     162 ..     121     180 ..      69     228 .. 0.80

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 2.9e-13
  Y_phosphatase3 105 sakkayrkvfealad.ee.pvlfHCtaGKDRTGvlaalllsllGvdeedivaDYlltney 162
                      ++++++ +++ +++ ++ pvl+HC  GK RTG +aa++ +  G + e+ +++Y+  ++ 
      KKY23886.1 121 PSAETISSIIKIMMNrANhPVLIHCNKGKHRTGCVAAIFRRCTGWPLEACIEEYEKYAAL 180
                     4568899999999996558***********************************976665 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.1   2.1e-10   5.3e-07      10      94 ..      70     159 ..      61     170 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 2.1e-10
                 C.HHHHHHHTCSEEEEESSSSSEC...ECCTTTTSEEEEECCESSTTSCCGGGHHHHHHHHH.HHHHTT-EEEEEESSSSSHHHHHHHHH CS
        DSPc  10 s.lallsklgitlvinvtkevpna...nalkkseieklripvedehetkiskyleeavefid.kakqkgkkvlVHCqaGisRSatliiaY 94 
                    ++l+ +g++ +i +   +  +    + k+++i++ +i v  ++ +++++  e ++++i+  + + ++ vl+HC+ G  R++++++ +
  KKY23886.1  70 NhFSILESYGFKTIITLVPGDILEenrVFFKNHGINHHQIHVVANKVSDVYPSAETISSIIKiMMNRANHPVLIHCNKGKHRTGCVAAIF 159
                 5556677778888887765443334557779*******************************555889******************9765 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   5.7e-07    0.0015     146     190 ..     117     158 ..      93     172 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 5.7e-07
                    SSSGSCCHHHHHHHHHHHHHHSTTSS-EEEECSSSSHHHHHHHHH CS
  Y_phosphatase 146 hgvpesaksllklirkvekskeaksgpvvVhCsaGvgRtgtfval 190
                    ++v +sa+ + ++i+ + ++    ++pv++hC +G  Rtg+++a+
     KKY23886.1 117 SDVYPSAETISSIIKIMMNRA---NHPVLIHCNKGKHRTGCVAAI 158
                    444455666667777776666...9****************9998 PP

>> PTPlike_phytase  Inositol hexakisphosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.1e-05     0.028     111     151 ..     119     158 ..      86     160 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.1e-05
                      S---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHH CS
  PTPlike_phytase 111 kapeeedfdalvsilkeapektalvfnCqmGrgRTTtamvi 151
                        p++e+++++++i+ + ++  +++++C  G+ RT  + +i
       KKY23886.1 119 VYPSAETISSIIKIMMNRAN-HPVLIHCNKGKHRTGCVAAI 158
                      4699**************85.56778*********887776 PP

>> Myotub-related  Myotubularin-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     6e-05      0.15     224     253 ..     130     159 ..     110     163 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6e-05
                     HHHHHHCS---EEEE-SSSSSHHHHHHHHH CS
  Myotub-related 224 iaksvelekssvLvhcsdGwDrtsqlssla 253
                     i   +++ +++vL+hc++G  rt  ++++ 
      KKY23886.1 130 IKIMMNRANHPVLIHCNKGKHRTGCVAAIF 159
                     3334567889**************999985 PP

>> DUF3338  Domain of unknown function (DUF3338)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00017      0.44      30      73 ..     174     217 ..     167     231 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00017
     DUF3338  30 kekvaalkkkqkaleerLelkleelkklClrEAeltGklpkeyP 73 
                  ek+aalk++  +     +  ++elk l+l+E+ +tG   +   
  KKY23886.1 174 YEKYAALKARDLDKAFISRFDVKELKALALQEGFVTGAFAPPHN 217
                 589999999999999999999****************9876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1802.42
//
Query:       KKY23887.1  [L=555]
Description: putative camp-mediated signaling protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-89  299.4   5.3    6.2e-89  299.1   5.3    1.0  1  Tcp11          T-complex protein 11
  ------ inclusion threshold ------
      0.088   12.9   0.1       0.23   11.5   0.1    1.7  1  baeRF_family2  Bacterial archaeo-eukaryotic release factor fa


Domain annotation for each model (and alignments):
>> Tcp11  T-complex protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.1   5.3   6.9e-93   6.2e-89       1     438 [.      49     501 ..      49     504 .. 0.83

  Alignments for each domain:
  == domain 1  score: 299.1 bits;  conditional E-value: 6.9e-93
       Tcp11   1 LrheilfDpelqfrpnldgeegrvketmakayWdaleeele...................kdppdysrllallkelrdiLlslvpnslrqeieevLDld 80 
                 Lr +i+ D++l+f p ++g++g++k++ a+ yW al+ el+                   +     +rl+ l+ +l+  Ll+l+p+ ++++i+++LD++
  KKY23887.1  49 LRVDINYDHDLHFMP-VKGKRGDQKRKEAQWYWAALALELQiysftarqpgpiaeqqlkmF----EQRLPHLVADLKALLLTLIPDVEAESINQTLDVP 142
                 89************7.99************************************9855444....59******************************** PP

       Tcp11  81 lleqqlekgvldleklaewlanllkklCAPmRDeevdkmvekiseaseessvdklVegLrelfeiLelMklDvaNhqirllrplLietaveyErkkFqe 179
                 ll+qq+e+gvl++ kla+wl+nllk++CAPmRD+++d+mv+ i+ +    ++  +V gL++lf+iLe+MklDvaNhqir++r +Lie++v+++ ++F++
  KKY23887.1 143 LLMQQVENGVLNIAKLATWLGNLLKSHCAPMRDAWADDMVRRIELGLAMDDATCIVAGLEKLFSILEAMKLDVANHQIRSFRLYLIEDTVNFQSAYFHK 241
                 *************************************************************************************************** PP

       Tcp11 180 rlesgkislestrkWlrkarekleaesserdpesssssssassspspskvliqglldllsssadpsseeefPetLalDhaRLrelradlrqlvvlascl 278
                 ++++++ + ++trkW ++a+    ++  + +++   s++++    +   +li+gl++ l+   +      +P  ++ D+ RL++lr d+++l+ l +c+
  KKY23887.1 242 KIAEQRFDPSTTRKWHEEAQ----QQHYTCNEST--SQNDG--TLR-FASLIHGLTAELTTAGGM---ARLPPAFQCDRGRLQQLRTDVQNLIHLDLCC 328
                 *******************4....2222222222..22222..333.6699*********97543...35***************************** PP

       Tcp11 279 llfkqlvkrdvsss...vsrsslkklkeeilalledees..esg.erwt...esialeiarevsksl.kessalpdempeaakawLskqlqkvlsksdp 367
                  l+++l+  + + s   +  ++l ++++++++ll d+ +  e++ e w+   + iale+ar+v +s+  +++++ + +++ +++ Ls+ l    s    
  KKY23887.1 329 SLLRSLLTGHGAGStdvSPTEMLTNFASRLFSLLWDDVRitEQAeEVWQnntDVIALELARAVYESQnRDTKDISHAEVARIEQCLSNVLHGQYS---- 423
                 ******98888777898889999*************9889866678899886677*******999987777777777777788888877777643.... PP

       Tcp11 368 vfkllesrvrkalearlla...........ssasekvretstasekllpaGlsefve...............eveelaerlaklvsvhwrvfgp.lYe 438
                   +   +++++++e +++            +                    ++e ++               + e++++rla++++++wrvf + +Y+
  KKY23887.1 424 QHQRTVNKIHEQVERSTMFhaqtfdtmspfA--------------------MAESQKkwrisrdklpgtklpDPEDISRRLAHIATMNWRVFRDlIYK 501
                 3444455555555555444111223333221....................22222233334445555666699******************998886 PP

>> baeRF_family2  Bacterial archaeo-eukaryotic release factor family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   2.5e-05      0.23      43      75 ..     363     395 ..     346     397 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.5e-05
  baeRF_family2  43 wshrryqrraeeswerNaeavAeevdrlvresg 75 
                    w   r+ ++aee w++N++ +A e++r+v es+
     KKY23887.1 363 WDDVRITEQAEEVWQNNTDVIALELARAVYESQ 395
                    77789999********************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.20s 00:00:00.78 Elapsed: 00:00:00.37
# Mc/sec: 4445.67
//
Query:       KKY23888.1  [L=360]
Description: putative rox3 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-61  207.6   5.0    2.4e-61  207.6   5.0    2.2  2  Rox3      Rox3 mediator complex subunit


Domain annotation for each model (and alignments):
>> Rox3  Rox3 mediator complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.6     0.013   2.4e+02     115     157 ..       6      67 ..       2     106 .. 0.64
   2 !  207.6   5.0   1.3e-65   2.4e-61       2     204 ..     148     354 ..     147     355 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.013
        Rox3 115 kewdasvLgldkdsklksakaastkkaqsaratapstplaaa....................e 157
                 k +  s L++ ++s+ ++a+ +++++++s ++++p++  +++                    e
  KKY23888.1   6 KSYA-SSLAHTQPSSIETASRQQSSPNTSFSPSQPADANTTNpfptpadsayglstladyraE 67 
                 4566.8888888888777777775566556666655554443555555555555555444441 PP

  == domain 2  score: 207.6 bits;  conditional E-value: 1.3e-65
        Rox3   2 srPnpsedLielYgLteiaaeVARtdpvtGeKinkLRKsYkgkikklglsGkfkavkkkeegkegellellklpdeeWqnqkvkgkeiekglsadvlsk 100
                 srPnpse+L++ YgL +i a VAR dp+tGeKinkLRKsY+g+ik++glsG++k+  k++   ++ ll+++++p++eW+ qkv +k+i+  +++d++sk
  KKY23888.1 148 SRPNPSEHLLSRYGLGPIVATVARADPKTGEKINKLRKSYEGQIKNFGLSGRNKPD-KRD---DKPLLAMMDWPEQEWEIQKVASKKID--FTDDFKSK 240
                 89******************************************************.777...679***********************..******** PP

        Rox3 101 lekalkmakGeipkke.wdasvLgldkdsklksakaas......tkkaqs.aratapstplaaaeaarpkrkgkKRsYgdssFeGYgegfeDdd....g 187
                 l+ka+km++G+++++  wd +++g++ +   +  ++++      +++++s   +t++++ ++++e +rp+r+gkKRsY+d+sF GYgeg+ Dd+     
  KKY23888.1 241 LQKAMKMEPGSVRNQGeWD-NIMGHERPLRPTMPSETKpdsfaaSTPRTSiNGTTSTQQKAQTSEINRPRRAGKKRSYNDESFAGYGEGYLDDEgdmeA 338
                 **************999**.******99888877777766676544444434444445555555******************************88777 PP

        Rox3 188 yStgdgddrgegkkrrk 204
                 yS  +g +rg g+krrk
  KKY23888.1 339 YSSDEG-GRGPGRKRRK 354
                 777666.5899*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 2277.24
//
Query:       KKY23889.1  [L=270]
Description: putative haloacid dehalogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0035   17.4   0.0      0.013   15.6   0.0    1.9  1  HAD_2     Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   7.3e-07     0.013      61     178 .]      99     226 ..      25     226 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.3e-07
       HAD_2  61 kieellrkyneekkk.....kevkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekalekl....kl 150
                 ++++  + +++e  +      +   +++  ++++ Lk+    l   ++ +r++++   +       F++   +ed++  KPd + +e +l k     ++
  KKY23889.1  99 DFDTTDSAIKSEALDlgssvGSWPAFPDTLDAMHRLKKYFPYLIPLSNVDRKSFQATYNGPLKGAGFTTYFLAEDIGSYKPDLKNFEYLLGKAdkeyGV 197
                 455555555555555444444456677777777777655555555667777777777766666677999999***********99998876555555** PP

       HAD_2 151 kkeeviyvGDsp.tDieaakkagikviav 178
                 +keev+ v  s  +D   ak++g+ ++++
  KKY23889.1 198 EKEEVLQVAQSLfHDHVPAKQMGMASVWI 226
                 ************9************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1928.68
//
Query:       KKY23890.1  [L=812]
Description: hypothetical protein UCRPC4_g02703 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.7e-230  764.6   5.2   6.3e-230  764.2   5.2    1.2  1  DUF3405   Protein of unknown function (DUF3405)


Domain annotation for each model (and alignments):
>> DUF3405  Protein of unknown function (DUF3405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  764.2   5.2  3.5e-234  6.3e-230       1     516 [.     193     791 ..     193     792 .. 0.95

  Alignments for each domain:
  == domain 1  score: 764.2 bits;  conditional E-value: 3.5e-234
     DUF3405   1 cfdRfgRygpYGlgeskkegglgvgeegekegsekvweektekvdwrkvdWgelqerCleaNkeRFkeleeke.......................... 73 
                 cfdRfgR+gpYGlg+   +gg+g++ +g++ g+++vw+e  ++vdwr ++W+e+qerC++aN++RF++l++ +                          
  KKY23890.1 193 CFDRFGRLGPYGLGYGLGKGGSGASINGDRVGADDVWNE-IPEVDWRGLKWAEVQERCVKANAHRFEPLPPPRtdwfrtfqigsdsnvksdeklskrdd 290
                 **************************************7.****************************998889************************* PP

     DUF3405  74 .....................................akkekeakeaeekeekekeaekekkeeeeeeekeekkkkkRtAvvlRtwtgykyteedilnl 135
                                                      ++ ek+ ++++ + e ++  ++e+k  e+e+ +e k+k +RtAv++Rtw +y yt+e+i++l
  KKY23890.1 291 lstepvekepadvekgeqttksmdkkpantetdekatESIEKKPETSKVAMEDTEPVAEESKPVESETISEGKEKLPRTAVIIRTWGDYPYTPESIMYL 389
                 ***************************999988765322222222333333345555666666777778889*************************** PP

     DUF3405 136 RalisElsLksGGeYevhllvhvkdeelpiwadeetyqkvleeavpeEfrglatLwsekqmeslYpgleeesftrdlevhgvyrsaflplqlFaqqhpe 234
                 RalisEl+L+sGGeY+vh+l+++kde+lpiw+d+ety++vle+ +peEfrg+ tLw+e+qm ++Y +l+ e+++rdl+vhgvyrs+f+p+q+Fa+qhpe
  KKY23890.1 390 RALISELTLQSGGEYHVHFLIQIKDENLPIWSDDETYKRVLEDVLPEEFRGMGTLWTERQMFLMYGALQ-ETWMRDLPVHGVYRSTFMPVQYFAYQHPE 487
                 *********************************************************************.78*************************** PP

     DUF3405 235 ydyfWnwEmDvRytGhyyelldklsefakkqpRkglweRnerfYipsvhGswedFtqavekqtee.....................kgektvwGpvr.. 310
                 yd+fW+wEmD+RytGh+y+l+d++s++ak+qpRk+lweRn+rfY+ps hGswedF+++v++qte+                     +ge++vwGp++  
  KKY23890.1 488 YDFFWQWEMDARYTGHWYNLFDSVSKWAKEQPRKNLWERNSRFYVPSKHGSWEDFRHTVRVQTEMgtdnpnnmwaglkgagkdgqiRGERPVWGPEPil 586
                 *************************************************************************************************65 PP

     DUF3405 311 .vkevkplgpkpptseeedkyewGvgEeADlitlnpifdpeettWvlrddvtgykneteakppRraaiitasrlSrrLLeamheetarkkhtmfsEmvp 408
                  ++ + +l+++p ts++ed+yewGvgEeADlit+np+fdp++ttW+l++dvtgy n+t++ ppRr+aiitasrlSrrLL +mh+et  ++htmfsEm+p
  KKY23890.1 587 dNNVTWELDVNPTTSYNEDQYEWGVGEEADLITFNPLFDPDSTTWLLAEDVTGY-NTTRSLPPRRVAIITASRLSRRLLLTMHHETSINHHTMFSEMWP 684
                 54445566**********************************************.88889*************************************** PP

     DUF3405 409 atvALhhGlKavyaphpvyvdrkwplealekvfnagrkgasggartsvfgkerehnlkgltwyynsefaeelyrrwlglkeeneGgeeeeeeeegrmcl 507
                 a++ALhhG+Kavyaph+ y+dr+wp+++le++fn+g++gasgg+rtsvfg+ rehn++g+twyyn++f+e l++rwlg+k +n+Ggee+e ++egrmcl
  KKY23890.1 685 ASCALHHGFKAVYAPHAEYIDRRWPTDYLESIFNGGKNGASGGSRTSVFGD-REHNFRGTTWYYNAGFPEVLWHRWLGYKFNNDGGEEWEISGEGRMCL 782
                 ***************************************************.*********************************************** PP

     DUF3405 508 psmllhpvK 516
                 p+mllhp+K
  KKY23890.1 783 PAMLLHPIK 791
                 ********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       909  (0.0507); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.47
# Mc/sec: 5157.70
//
Query:       KKY23891.1  [L=316]
Description: putative kinase-related protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00014   21.6   0.0     0.0019   18.0   0.0    2.1  1  PRK         Phosphoribulokinase / Uridine kinase family
    0.00019   20.7   0.0    0.00034   19.9   0.0    1.3  1  NB-ARC      NB-ARC domain
     0.0068   16.9   0.0      0.028   14.9   0.0    2.0  2  AAA_18      AAA domain
     0.0077   16.6   0.0      0.025   15.0   0.0    1.8  2  AAA_16      AAA ATPase domain
  ------ inclusion threshold ------
       0.01   16.0   0.0       0.11   12.6   0.0    2.2  2  AAA_33      AAA domain
      0.012   16.1   0.0      0.021   15.2   0.0    1.4  1  AAA         ATPase family associated with various cellular ac
      0.013   14.8   0.1       0.15   11.3   0.0    2.1  2  Zeta_toxin  Zeta toxin
      0.056   13.7   0.0       0.12   12.6   0.0    1.5  1  AAA_22      AAA domain
      0.085   13.3   0.0       0.33   11.4   0.0    1.9  2  AAA_17      AAA domain
      0.097   12.4   0.0        0.2   11.4   0.0    1.4  1  RuvB_N      Holliday junction DNA helicase RuvB P-loop domain
       0.12   12.3   0.0       0.18   11.7   0.0    1.2  1  NTPase_1    NTPase
       0.12   11.4   0.6       0.61    9.1   0.1    1.9  2  T2SSE       Type II/IV secretion system protein
       0.12   11.5   0.0       0.19   11.0   0.0    1.2  1  DUF2075     Uncharacterized conserved protein (DUF2075)
       0.13   12.1   0.0        1.1    9.1   0.0    2.0  2  dNK         Deoxynucleoside kinase


Domain annotation for each model (and alignments):
>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.5e-06    0.0019       1     141 [.      17     180 ..      17     194 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.5e-06
         PRK   1 vIgvagsSGaGkttvarklekifgrekvkaaei...................egdsflrldraekdl.eleerkrakekevsflspeandfdllyevlk 79 
                 +I+++g  G+Gktt+a  +  ++++      +                     +d  + + + + +l ++ee   a+ ++   +  + n f  l e l+
  KKY23891.1  17 LISISGIPGSGKTTLASLVCTRLNQLYHSYSQSlhpntpdsppispdicvslPLDGYHLTRSELSSLpHPEE---AHYRRGAPFTFNGNGFLSLVESLR 112
                 599999999999999999999999665553333688888888887766655544444444444443313333...333444556667899999999999 PP

         PRK  80 e..lkegkkvdkpiYsheteeaapdkeeliegadvlviEGlhalyder....vaelldlkiyvdisid 141
                 +  l e+++++ p +sh+ ++   +  +++ +a +++iEGl+   d +     a+l d + ++ + i+
  KKY23891.1 113 SpiLPETRTIRAPSFSHSIKDPIENDIPIPPSARIVIIEGLYLTLDLKpwnsAASLFDESWFISVPIE 180
                 87799*************9999998999999***********99887766667777776666655555 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.7e-07   0.00034      15      52 ..      10      47 ..       5      51 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.7e-07
                TTTSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCCCBT CS
      NB-ARC 15 kdelqslvvalvGmgGvGKttlakqilnksdevegrFd 52
                k ++++l+++++G +G+GKttla+ +   ++++ + + 
  KKY23891.1 10 KSSSDRLLISISGIPGSGKTTLASLVCTRLNQLYHSYS 47
                6788999**********************999999986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.2e-05     0.028       1      22 [.      18      39 ..      18      71 .. 0.76
   2 ?   -1.0   0.0       1.9   2.4e+03      45      69 ..     202     226 ..     169     255 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.2e-05
      AAA_18  1 IlltGtpGvGKttlakeLskrl 22
                I ++G+pG+GKttla  +  rl
  KKY23891.1 18 ISISGIPGSGKTTLASLVCTRL 39
                679************9987766 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.9
      AAA_18  45 aldeskrldedkldklldaleenss 69 
                 a ++  + d+ +  ++ld l+ n+s
  KKY23891.1 202 ARKRVGESDMRNAREILDHLHPNIS 226
                 4555555566666666666666555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     2e-05     0.025      16      50 ..       7      41 ..       3      84 .. 0.85
   2 ?   -1.5   0.0       2.2   2.8e+03      79     111 ..     219     251 ..     185     284 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2e-05
      AAA_16 16 lervrsgrpelvllsGesGvGKsslvrellralek 50
                +++ +s++  l+ +sG +G+GK++l+  + ++l++
  KKY23891.1  7 FQAKSSSDRLLISISGIPGSGKTTLASLVCTRLNQ 41
                6666677779*****************99998876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.2
      AAA_16  79 eellrqlldeaesaeleawrekleealaavpel 111
                 ++l   + +  es+e + w+ k +++++a  e 
  KKY23891.1 219 DHLHPNISETIESTEDDNWKPKTHDQAEALEEE 251
                 356666666677778888888888777744443 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   8.7e-05      0.11       2      24 ..      18      40 ..      17      53 .. 0.83
   2 ?    0.7   0.0       0.4   5.2e+02     103     122 ..     174     193 ..     162     237 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.7e-05
      AAA_33  2 vllvGlpGsGKstlaerllkklg 24
                + + G pGsGK+tla  ++ +l 
  KKY23891.1 18 ISISGIPGSGKTTLASLVCTRLN 40
                6678***********99998775 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.4
      AAA_33 103 vvetdeetlkeRlakRaang 122
                 +++++ et+ eRl kR  + 
  KKY23891.1 174 FISVPIETASERLIKRHVKA 193
                 67788888888888887653 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   1.7e-05     0.021       3      24 ..      20      41 ..      18      54 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.7e-05
                EESSTTSSHHHHHHHHHHHHTH CS
         AAA  3 lyGppGtGKTllakavakelgv 24
                ++G pG GKT+la+ v++ l++
  KKY23891.1 20 ISGIPGSGKTTLASLVCTRLNQ 41
                68****************9975 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00012      0.15      12      41 ..      11      40 ..       6      54 .. 0.82
   2 ?    1.1   0.1      0.15     2e+02      56      89 ..     220     254 ..     199     257 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
  Zeta_toxin 12 sqerPklillgGqpGAGKselaellkdele 41
                s++   li ++G pG+GK++la+l+ ++l+
  KKY23891.1 11 SSSDRLLISISGIPGSGKTTLASLVCTRLN 40
                456678999**************9988774 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.15
  Zeta_toxin  56 elhPeyeeilka.dpkkaseltqkdaselvekllq 89 
                  lhP+ +e ++  +++++   t+++a  l e+ ++
  KKY23891.1 220 HLHPNISETIEStEDDNWKPKTHDQAEALEEEKTD 254
                 58****99999769999999***999999887655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.4e-05      0.12       4      32 ..      14      42 ..      10      73 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.4e-05
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqldee 32
                ++ ++ + G +G+GKTtl+  +  +l++ 
  KKY23891.1 14 DRLLISISGIPGSGKTTLASLVCTRLNQL 42
                678899*************9998888654 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00026      0.33       2      23 ..      22      43 ..      21      52 .. 0.78
   2 ?   -1.4   0.0       2.3   2.9e+03     106     123 ..     173     190 ..     159     228 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00026
                E-TTSSHHHHHHHHHHHHTEEE CS
      AAA_17  2 GgPGsGKgtqceklvekygfth 23
                G+PGsGK+t+++ +  +++  +
  KKY23891.1 22 GIPGSGKTTLASLVCTRLNQLY 43
                9**********88887776554 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.3
                 EEEE--HHHHHHHHHHHT CS
      AAA_17 106 illeadpeeilerrlkdr 123
                  +++++ e+  er++k++
  KKY23891.1 173 WFISVPIETASERLIKRH 190
                 567778888888887774 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00015       0.2      33      62 ..      13      44 ..       7      54 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
      RuvB_N 33 ldhvl..lyGpPGlGkttlakiiakelgvklk 62
                 d +l  ++G PG Gkttla+++++ l+   +
  KKY23891.1 13 SDRLLisISGIPGSGKTTLASLVCTRLNQLYH 44
                555552258**************999987655 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00014      0.18       2      25 ..      18      41 ..      17      46 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
                EEEE--TTSSHHHHHHHHHHHH.. CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellks 25
                + i+G pG+GKtTl + v+  l++
  KKY23891.1 18 ISISGIPGSGKTTLASLVCTRLNQ 41
                679****************99965 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00048      0.61     127     155 ..      13      41 ..       7      45 .. 0.85
   2 ?    0.2   0.1      0.24     3e+02      22      90 ..     197     265 ..     187     281 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00048
       T2SSE 127 rerglilvsGgTgsGKttllyallkeink 155
                 + r li +sG  gsGKttl+  + + +n+
  KKY23891.1  13 SDRLLISISGIPGSGKTTLASLVCTRLNQ 41 
                 5789999************9998888775 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.24
       T2SSE  22 pervkvrervdgielreveelekaalerlisriaalakldiseerplqdarlpekgvrlrvvllPvvag 90 
                 p+++  r+rv++ ++r+++e+ +++   + ++i ++   + + +   q  +l+e++++ +++ +P +++
  KKY23891.1 197 PDEAYARKRVGESDMRNAREILDHLHPNISETIESTEDDNWKPKTHDQAEALEEEKTDHHLLPPPRSEN 265
                 67777899****9************99999999999999888888888888888888877777776655 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00015      0.19       3      42 ..      17      55 ..      15      68 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
     DUF2075  3 vvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhp 42
                ++ ++G +G+GKt +++ + ++l ++  +++++ l  N p
  KKY23891.1 17 LISISGIPGSGKTTLASLVCTRL-NQLYHSYSQSLHPNTP 55
                5679******************9.5556666666666655 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00084       1.1       1      26 [.      18      45 ..      18      62 .. 0.79
   2 ?    0.6   0.0      0.33   4.2e+02     127     156 ..     173     202 ..     157     222 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00084
                EEEEESTTSSHHHHHHHHHCCST..CEE CS
         dNK  1 ivveGnIgaGKstlvklLskklg..vkv 26
                i+++G  g+GK+tl++l   +l+  ++ 
  KKY23891.1 18 ISISGIPGSGKTTLASLVCTRLNqlYHS 45
                89*************9988887655555 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.33
                 EEEE--HHHHHHHHHHCTTCCCTTS-HHHH CS
         dNK 127 iYLkasletclerikkRgreeekkieldYl 156
                  ++ +++et  er+ kR  ++    +++Y 
  KKY23891.1 173 WFISVPIETASERLIKRHVKAGIAPDEAYA 202
                 5899*************9888777677665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 1987.53
//
Query:       KKY23892.1  [L=536]
Description: putative sugar transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.4e-81  272.0  15.3      2e-62  211.6   6.3    2.0  2  Sugar_tr       Sugar (and other) transporter
    2.2e-25   89.3  18.6    1.2e-23   83.6  12.5    2.1  2  MFS_1          Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.6   6.3   2.2e-66     2e-62       2     329 ..      15     344 ..      14     345 .. 0.94
   2 !   66.8   1.8   1.8e-22   1.6e-18     362     452 .]     344     433 ..     343     433 .. 0.98

  Alignments for each domain:
  == domain 1  score: 211.6 bits;  conditional E-value: 2.2e-66
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHH.HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGs.lfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                  lvaa + +l+gYd  v+++++ + +    +++  + ++++     +g++  ++ vGai+G+ +f+g+++d+ GRk +++++++l++i+++ q++++ +
  KKY23892.1  15 SLVAAACMILYGYDASVYNSVQGSHN---WEQWFGNPGPEK-----IGAVNTAYTVGAIAGGwFFGGPISDIAGRKMGMAAGCILVIIATFTQVFSP-R 104
                 589999***************99999...777777777665.....7*************9846778******************************.6 PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-...TTHHHHHHHCCHHHHHHHHHHGGGS---H CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn...adgwrillglqlvpallllilllflPESP 195
                   + ++i gRvlvG+g G+a +  P+yi+E+Ap+++Rg+l+s++q+++++G ++ ++++++  + +n   ++ w++ + +ql+ ++++lill ++P +P
  KKY23892.1 105 GDLGAFIGGRVLVGLGQGIALTSGPIYIGELAPPQIRGKLMSFWQTFYSVGSFLCFWVNYACTRHRNhlgEWDWKLVIIFQLLVPVTILILLPTIPGTP 203
                 6*************************************************************888888******************************* PP

                 HHHHHTT-HH.HHHHHHHHHHHC.HHHHHHHHHHHHHHHHHHH.......HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH. CS
    Sugar_tr 196 rylvekgkee.eakevlaklrge.edadrelaeekdsleaeqeee..kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks. 289
                 r++++++++   a+  l ++r++ ++++ e++ + +sle e++ +  +  +  l++ +++r rll+++v++++qq tG   +  ys++if+++ ++++ 
  KKY23892.1 204 RWYLKRKNDIvSARIALHRVRDTsAEVETEIQIIRESLEFEKQIRhySSGYIGLWKDRSIRNRLLLAFVINAGQQITGQGTLNTYSTKIFQKVFVNQPg 302
                 *****999999********6666599***************887787777889999999**************************************** PP

                 ..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHH CS
    Sugar_tr 290 ..llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmai 329
                   +l++++  +  +++t+ a ++vdrfGR+ ll+lG++gm i
  KKY23892.1 303 tiALINALNATFGILFTLNATWTVDRFGRKFLLVLGGVGMGI 344
                 ****************************************86 PP

  == domain 2  score: 66.8 bits;  conditional E-value: 1.8e-22
                 HHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 362 lfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 +++++wg + w+l sE+fp svR+ a  +a +++++an +++++fp +++++g +y f++fag+    + fv   vpet gr le +e +f
  KKY23892.1 344 IYKPSWGATTWILTSEIFPISVRAQAVGMASQTQNIANAIVQQFFPAFLDHCG-FYAFYLFAGIDFGLAAFVTCMVPETRGRGLENMEGVF 433
                 699**************************************************.********************************99776 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6  12.5   1.4e-27   1.2e-23      29     286 ..      48     344 ..      10     354 .. 0.79
   2 !    9.1   0.6   6.1e-05      0.54     108     176 ..     355     422 ..     348     444 .. 0.82

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 1.4e-27
       MFS_1  29 ispseigllltlyalgaavaslpl.GrlsdrfGrrrvlllglllfalglllll.fa.sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergrai 123
                   p  ig + t+y++ga+++  ++ G++sd  Gr+  + +g +l +++ ++   f+  +   +++ +rvl Glg+g+++++g ++i +++p++ rg+ +
  KKY23892.1  48 PGPEKIGAVNTAYTVGAIAGGWFFgGPISDIAGRKMGMAAGCILVIIA-TFTQvFSpRGDLgAFIGGRVLVGLGQGIALTSGPIYIGELAPPQIRGKLM 145
                 456669***********88887777***********************.6666687755666************************************* PP

       MFS_1 124 gllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee............................ 188
                 +++++++s+G+ l   +  +++ + +      W +v ++  +v +  ++   ll + + ++r+  + k +                             
  KKY23892.1 146 SFWQTFYSVGSFLCFWVNYACTRHRNhlgewdWKLVIIFQLLVPVTILI---LLPTIPGTPRWYLKRKNDIvsarialhrvrdtsaeveteiqiiresl 241
                 *******************999666679998899998888888888877...88888999999999888889999999998888888777666665533 PP

       MFS_1 189 ..kgtgpaplvp.......awkallkdpvlwillialllfffgfsg.....lltllplylqevlglsglllaglllallalvgailallagrlsdrlgr 273
                   +    ++++        +wk    ++    ll+a+++++ g ++     l t+++ ++q+v+      +++l+ al a +g+ + l a++ +dr+gr
  KKY23892.1 242 efE----KQIRHyssgyigLWKDRSIRN---RLLLAFVINA-GQQItgqgtLNTYSTKIFQKVFVNQ-PGTIALINALNATFGILFTLNATWTVDRFGR 331
                 331....222225554444555555555...4666666663.555566777999999999****999.567777899999999999************* PP

       MFS_1 274 rrrlllallllll 286
                 ++ l+l+++++ +
  KKY23892.1 332 KFLLVLGGVGMGI 344
                 *******999976 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 6.1e-05
       MFS_1 108 aliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeep 176
                 +l++++fp + r++a+g++s + +++ ++   + ++++++ g+  +fy++a++ + ++ ++ + +pe++
  KKY23892.1 355 ILTSEIFPISVRAQAVGMASQTQNIANAIVQQFFPAFLDHCGFY-AFYLFAGIDFGLAAFVTCMVPETR 422
                 5899**************************99999999*****6.666666666666565555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 3531.93
//
Query:       KKY23893.1  [L=623]
Description: putative het domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-06   29.1   0.1    2.9e-05   24.4   0.0    2.5  2  HET       Heterokaryon incompatibility protein (HET)


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.6e-09   2.9e-05       1      80 [.     125     208 ..     125     223 .. 0.85
   2 ?    1.6   0.2     0.018   3.3e+02     130     146 .]     226     242 ..     216     242 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.6e-09
         HET   1 YeaLSYvW..gdsk.ekeeievngklleltenledalqvlrklgerylWiDaiCInQdddk..ekskqvqlmadIYsnAelviva 80 
                 Y+a+S+vW  g+ + + ++++v  +l++l   l++++ v   l++   WiD +CI    ++   +++ +++++ ++++++ v+v 
  KKY23893.1 125 YVAVSHVWahGRGNpNANALPV-CQLWSLVHVLRKLIGVKSVLQPCEFWIDTLCIPVGAEHkiLRKRAIEKIDMVFRESRSVLVL 208
                 9*******66333334667766.6999999********9999*************99876667899**************99986 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.018
         HET 130 eellespwfkRvWvlQE 146
                  ++++s w++R+W+l E
  KKY23893.1 226 LRVITSGWVRRLWTLSE 242
                 5678999*******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3905.72
//
Query:       KKY23894.1  [L=509]
Description: putative nuclear envelope [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.4e-102  342.8   0.1   4.4e-102  342.8   0.1    1.8  2  Ndc1_Nup         Nucleoporin protein Ndc1-Nup
  ------ inclusion threshold ------
       0.11   12.4   3.9       0.24   11.3   3.9    1.5  1  Spore_coat_CotO  Spore coat protein CotO


Domain annotation for each model (and alignments):
>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.8   0.1  4.9e-106  4.4e-102     213     611 .]       2     390 ..       1     390 [. 0.89
   2 ?   -4.2   4.4      0.55   4.9e+03     376     435 ..     405     446 ..     391     507 .. 0.32

  Alignments for each domain:
  == domain 1  score: 342.8 bits;  conditional E-value: 4.9e-106
    Ndc1_Nup 213 illrlflnlprsaapppldslpfnlsLllrtlllgflllllwelanllFdvyltegplkkgkpisseskdpngtLlsGLkskkplvklfAfqELaliaq 311
                 ++++lf+n+prs+a  +  ++p +  +llr++++gf+ll+lwe++n+lF++ l+++p+kk++p+s eskdpngtLlsGLk+kk++vk+fA++EL++i+q
  KKY23894.1   2 AFAKLFYNIPRSNAN-YEGFPPCSPPMLLRAFFSGFCLLVLWESSNILFSALLAQEPIKKDQPLSAESKDPNGTLLSGLKAKKDTVKTFALWELVYISQ 99 
                 799********8887.5578888**************************************************************************** PP

    Ndc1_Nup 312 sspsrRkaIFsdidrkggstWsqilkeClklikeltqrinergqpapkaapskapknkasapvkelprlsksplkkkddeifgnsltaeaspksssssk 410
                 + p+rRkaIF di+r+gg+tW+q l+++l+++k++++r++++++pa++a+  +  ++++ +++++lp+++  p+ k++d+if+      +sp+++ ++ 
  KKY23894.1 100 KLPDRRKAIFADIERSGGPTWTQMLQASLSVVKAIEDRVKASQAPAQTAQV-TRDSTAPYPSIQSLPHIA--PDVKSSDSIFA------SSPPPQ-TKG 188
                 *******************************************96666655.667899999********8..33333799***......999999.9** PP

    Ndc1_Nup 411 egvekalsslakspgqs..psptarlsprarkllekaksrllskeqkealsestikkkvekelaq.llkspligylFrqslrrrlealv.....snpql 501
                 e++++++ +l +s gqs  ++p+a+ + ++  +   +ks+ l+  ++ ++++s   + + +++a+ +l+s  +gy+Fr+++ r l++++     ++   
  KKY23894.1 189 EKLQSTVEPLVRSLGQSphWTPSAKERVKGLLEYPGKKSTELTDASRTTSNPSFLPGPL-QYYAKaFLRSH-AGYPFRHTFPRVLSSIIlaspnAQTAQ 285
                 *****************999999987755555555566666665555555555555555.6666669**99.********************9989999 PP

    Ndc1_Nup 502 iinaieaLsnLvvaSltEDqyGvVqrdvpeIlrtLtsllealekfkeglpahwtdekgeaesskrespkeldevdelldalktalyeIllaFgeylndl 600
                 i++a+e++++++vaSl+ED yG+ q++vpe +rt+ts+++a+e++ +++++hwtd+++ +++ +r  +    ev+++l+ lk +l e+l aF+ yl+++
  KKY23894.1 286 IVDAVESITRMLVASLSEDLYGKAQSTVPETVRTFTSTIKAIEDLIDTMTPHWTDVEY-ETKGARVGE----EVEVVLERLKGGLDELLGAFQLYLREV 379
                 *********************************************99***********.444555444....9************************** PP

    Ndc1_Nup 601 rlspkvlrlak 611
                 +ls+++++ ak
  KKY23894.1 380 GLSDADFKAAK 390
                 ********997 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 0.55
    Ndc1_Nup 376 elprlsksplkkkddeifgnsltaeaspkssssskegvekalsslakspgqspsptarls 435
                 ++p++s s++k ++++i +                 ++  + ++  +s g++ +p +rl+
  KKY23894.1 405 SQPQVS-SNEKPNNENIQK-----------------ALPPKNGDKRSSAGGERPPRKRLE 446
                 222222.111111222222.................111111111111111111222222 PP

>> Spore_coat_CotO  Spore coat protein CotO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   3.9   2.7e-05      0.24      31     116 ..     385     473 ..     356     498 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.7e-05
  Spore_coat_CotO  31 sfkeekkqaaakekkdeaeekkpekaveeeveqekkkeaaePaeqeeeekaeeeekkeeeeqkeeeeekqetveaekPeqearkP...p 116
                       fk++k++   ke+k +  +++p+ + +e+ ++e+ ++a +P++ ++  +a +e    +  ++++  +++e+  a  P+qe++k    +
       KKY23894.1 385 DFKAAKEAVRRKERKRPVAQSQPQVSSNEKPNNENIQKALPPKNGDKRSSAGGERPPRKRLEERDRGKDLEFLTALPPQQEKEKGktdE 473
                      689999999999***************************************999999999999999*******9999999999874441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.36s 00:00:01.08 Elapsed: 00:00:00.57
# Mc/sec: 2693.01
//
Query:       KKY23895.1  [L=300]
Description: putative 37s ribosomal protein rsm25 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-72  243.4   5.0    2.5e-72  243.2   5.0    1.0  1  MRP-S25   Mitochondrial ribosomal protein S25
      3e-05   24.3   2.7      0.037   14.3   0.1    2.7  2  MRP-S23   Mitochondrial ribosomal protein S23


Domain annotation for each model (and alignments):
>> MRP-S25  Mitochondrial ribosomal protein S25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.2   5.0   2.8e-76   2.5e-72       2     226 ..       3     238 ..       1     242 [. 0.88

  Alignments for each domain:
  == domain 1  score: 243.2 bits;  conditional E-value: 2.8e-76
     MRP-S25   2 kiqtnavnvlertsallksgllkkkPawydvvakiPPstkltrkpklredpskkkrkktlkkksekk..........klektreskkekkkkakklfkp 90 
                 +++ +a++v++r+ + l++  ++kkP+w+dv++kiPP++ ++r+ +++ +p  ++r +t    ++++          +  + +e +  +++++k +fkp
  KKY23895.1   3 RYNFTALRVRQRAIRNLETVQTTKKPIWLDVLGKIPPAQVFVRQLPQK-HPDVRRRIRTSIPAAADTpilpdgepepQ-TTYEEYEVVSRREQKTIFKP 99 
                 78999****************************************999.77766665555444444458999976431.3333344456677889**** PP

     MRP-S25  91 pklkyleDklRkqFykdHPwElarPkvlvEnsgkdlekkdwsr.lr..qlgkpldgEsvVqrtlyLlknkeklslseAYdkarfeFyrlrmeeeiesrv 186
                 +++++ eD+lR++FykdHPwElarP++lvEn+g+d+ ++dws+ ++  q gk+ldgEsvVqr+++Ll+++++++  +AYd+ar+eFy  r +e++e+rv
  KKY23895.1 100 RQIRFQEDELRTRFYKDHPWELARPRMLVENTGQDHAQCDWSTgILqhQKGKKLDGESVVQRQIWLLEHVPNMTTDNAYDTARREFYDARHQEDVERRV 198
                 ******************************************9954136799*********************************************** PP

     MRP-S25 187 AkeEaemyGavfgkseleiglekeqkvidkwkkkaeeete 226
                 A+eEa ++Ga+f+++ +++g++ e+k++d w+++a++++ 
  KKY23895.1 199 AAEEAGYVGAQFEPDVIHWGMTVEDKAYDAWEAWAQQQVI 238
                 ************************************9975 PP

>> MRP-S23  Mitochondrial ribosomal protein S23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   4.1e-06     0.037      15      59 ..      13      55 ..       4      61 .. 0.75
   2 !    9.6   0.4   0.00012       1.1      56      77 ..      97     118 ..      76     190 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.1e-06
     MRP-S23 15 vkdLlrsgvlkeeekPlWydvyeafPPkreplyerpapkledkvr 59
                 + + + + +++++kP+W dv  + PP +  ++ r++p+++  vr
  KKY23895.1 13 QRAIRNLETVQTTKKPIWLDVLGKIPPAQ--VFVRQLPQKHPDVR 55
                555556678999***************86..66666666545554 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00012
     MRP-S23  56 dkvreilYeeDevrakfykqyg 77 
                  k r+i ++eDe+r +fyk++ 
  KKY23895.1  97 FKPRQIRFQEDELRTRFYKDHP 118
                 3559**************9764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.32s 00:00:00.87 Elapsed: 00:00:00.52
# Mc/sec: 1747.41
//
Query:       KKY23896.1  [L=395]
Description: hypothetical protein UCRPC4_g02709 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-62  212.4   0.0    1.4e-62  212.0   0.0    1.1  1  Ydc2-catalyt  Mitochondrial resolvase Ydc2 / RNA splicing MRS
    0.00016   21.8   0.0       0.44   10.7   0.0    3.3  3  Pox_A22       Poxvirus A22 protein
  ------ inclusion threshold ------
       0.13   12.0   0.0       0.27   11.0   0.0    1.5  1  SAP           SAP domain


Domain annotation for each model (and alignments):
>> Ydc2-catalyt  Mitochondrial resolvase Ydc2 / RNA splicing MRS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.0   0.0   2.3e-66   1.4e-62       1     276 [.      93     346 ..      93     350 .. 0.84

  Alignments for each domain:
  == domain 1  score: 212.0 bits;  conditional E-value: 2.3e-66
                   EEEEEE-STTEEEEEEEE.......-TTS-EEEEEEEEE-TT...................SS-TT--------SHHHHHHHHHHHHHHHHHHH--S CS
  Ydc2-catalyt   1 IlSIDmGikNlAfaklkvekkskkakekelptlnawkklnlsellstsaeeskseeeeeskskektkekekesfspdalaelAykLvselllaykPt 97 
                   IlSIDmGi+NlA+a + v + ++++ke + p+  +wk+l++se      ++  ++e+   +s++++ + +++++sp+ la +A+++vs++l++++Pt
    KKY23896.1  93 ILSIDMGIRNLAYAFVIV-PAPESEKETSIPIFFDWKRLDVSE-----TQRARNSEDDGDESPPSNHQLKSNPYSPSNLAPIAHNFVSSILSTHNPT 183
                   9*****************.9999999****************4.....444446667899999********************************** PP

                   EEEEEE----T.TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---EEEEE-CCHHHHHHH...........HHH-----------HHHHHHHH CS
  Ydc2-catalyt  98 hvlIErQRfRsgggsavlewtlrvnvLEgmLyAvlytlkqesegkkaksvvigvePkrvvnYWleeessesstkekkkkkksskekKkvkidlvgsw 194
                   h+lIErQRfRsgg+savlew+lrv+v+EgmL+A +  l  e+       ++ +++P rv+++Wl ++          +  ++++  Kk+k+++  ++
    KKY23896.1 184 HILIERQRFRSGGSSAVLEWSLRVGVFEGMLHALFLGLAIERDIPL---DIRSIDPGRVTRFWLSKYT--------GSPPENAAAVKKFKVEVAARI 269
                   **************************************99997777...9**************9885........467889*************** PP

                   HHTTS.......EEESS..........HHHHHHHHH--STTT...................HHHHHHHHHHHHHHHHHHHHH CS
  Ydc2-catalyt 195 LsaeikskakkslkislkeeaeleelveaylekwkkkkkskkkkkkksklakkdeesvdikKlDDLaDsllqgltwlewqan 276
                   L +++k++   ++  +l ++  +      +l k ++++ s  +++ + +++ ++ ++++ +K+DDLaDs+l  +twlewq+ 
    KKY23896.1 270 LASCEKDMSLINTAPNLHKDMIM-----PFLHKHQSRNTSPTTTTSTTRKSPNSRSPEKLDKIDDLADSFLSVMTWLEWQKA 346
                   *****666555555555444444.....33333333333333333333333556899***********************86 PP

>> Pox_A22  Poxvirus A22 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   7.3e-05      0.44       3      45 ..      93     140 ..      91     150 .. 0.71
   2 ?    1.7   0.0     0.043   2.6e+02      49      66 ..     177     194 ..     153     201 .. 0.75
   3 !    5.3   0.0    0.0034        20     124     142 ..     323     341 ..     310     344 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.3e-05
     Pox_A22   3 iaaiDiGvknpartllevkd....nkarikv.ldiekldwssdwerrv 45 
                 i++iD+G++n+a++++ v      ++++i +  d ++ld s+  + r 
  KKY23896.1  93 ILSIDMGIRNLAYAFVIVPApeseKETSIPIfFDWKRLDVSETQRARN 140
                 99************9988554454444564426888888886555444 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.043
     Pox_A22  49 ilsynvdvvllEkqgrrs 66 
                 +++ n++ +l+E+q  rs
  KKY23896.1 177 LSTHNPTHILIERQRFRS 194
                 34499*********9988 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0034
     Pox_A22 124 erkKlDDvADsfnlalkyv 142
                 +  K+DD+ADsf   ++++
  KKY23896.1 323 KLDKIDDLADSFLSVMTWL 341
                 5579********9888886 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.6e-05      0.27       2      24 ..      45      67 ..      44      68 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.6e-05
                TT--HHHHHHHHHHTT--TTS-H CS
         SAP  2 skltVaeLKeeLkkrGLptsGkK 24
                ++l+ ++LK++  + G ++sG+K
  KKY23896.1 45 QTLRASQLKDLAIAVGASVSGTK 67
                5799******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2835.49
//
Query:       KKY23897.1  [L=994]
Description: putative actin-interacting protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.8e-150  499.9   6.5   1.1e-149  499.0   6.5    1.5  1  AIP3        Actin interacting protein 3
  ------ inclusion threshold ------
      0.016   15.6   1.3        8.9    6.8   0.0    4.1  3  Syntaxin_2  Syntaxin-like protein
       0.13   12.1   2.0       0.38   10.6   0.0    2.6  3  LemA        LemA family
       0.83    9.8  18.6      0.028   14.5  11.1    2.4  2  PKK         Polo kinase kinase
        9.6    6.4   6.3        3.7    7.7   0.2    3.0  3  CHDCT2      CHDCT2 (NUC038) domain


Domain annotation for each model (and alignments):
>> AIP3  Actin interacting protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  499.0   6.5    3e-153  1.1e-149       1     408 []     471     911 ..     471     911 .. 0.97

  Alignments for each domain:
  == domain 1  score: 499.0 bits;  conditional E-value: 3e-153
                 XXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        AIP3   1 FLqlgskvkKvvleeg...ltiasLrllFvekFaysp..ggedfPeiyiqDpksgvrYeLedlsdvkdrsvLsLniepldevkkhideslaslskelke 94 
                 FLq++sk+kK+vl+eg   lt+a+L+l+F+ekFa+++  +g d+PeiyiqDp sgvr+eLedl+dvkdr+vL+Ln+e ldevkkhid++l+ +++ ++ 
  KKY23897.1 471 FLQYRSKIKKFVLPEGyseLTVARLQLAFIEKFAWNThnNGVDLPEIYIQDPISGVRHELEDLNDVKDRCVLVLNVEILDEVKKHIDDGLGGIRRLIEG 569
                 9*************88888******************99999********************************************************* PP

                 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXX...............................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        AIP3  95 lkssiesqkaslqevserqeeaakekasesla......................kkelkaqlkevqslrrdLavlrqlysefkseikeslselrekakk 171
                 ++ +i+ q++ +q+ serq e+ak++a+  ++                      +++++a+l+evqslrr++avlrq ys++ s++++sl+++++k ++
  KKY23897.1 570 VRGAIDGQESLMQRFSERQLETAKDMARMAATpppapavsiskiaatkqpglrsTAQSSASLSEVQSLRREIAVLRQSYSTMASDFTASLQNIKAKGAN 668
                 ***************************95555*********************99999***************************************** PP

                 XX....XXXX.XXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        AIP3 172 vk....easlastkkssnrayiekgkkkLseesdklvtkvddLqDlvedlrkDVvqRgvrpskkqlesvakeikkakkelkkleeyiktekpvWkkiWe 266
                 v+    +a ++  +++++r ++e+gkk+L ees++lv++vddL+DlvedlrkDVv+Rgvrp ++qle+v+k+i+ + kel+k++++ik+e+pvW+kiWe
  KKY23897.1 669 VQklaaSAIVPGFAGNAGRVHVEDGKKQLLEESENLVNRVDDLSDLVEDLRKDVVTRGVRPLPRQLEDVSKDISLTVKELTKVKDFIKRERPVWTKIWE 767
                 **7776666778889************************************************************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXX..XXXXX.XXXXXXXXX.-HHHHHHHHHHHHHT----HHHHHHHHHHHHH CS
        AIP3 267 kELqkvveeqqfLtlqeeLlaDLkeDlekasevfelveqvveeqekesk..rnkkskarllipepgedlkeakdtvllevralqpdhesRleAieraek 363
                 kEL++v++e+++Lt+qe+L+aDL  Dle++s vf+lve+++++q+ +s+  ++ ++ +r+l +++  d+++akd+vl+evralqp+he+RleAieraek
  KKY23897.1 768 KELNQVCQERDELTQQEDLMADLTGDLEDLSGVFKLVEEATKQQNLQSSggNSVRTVSRNLPTDSYVDPQRAKDGVLGEVRALQPNHENRLEAIERAEK 866
                 *********************************************9999774555556777789999******************************** PP

                 HHHTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        AIP3 364 lrekelearredefqkELgeFVeekkLkksGGveEverlRkkkde 408
                 +r++ele+rr  efq+E+++FVee+kLkk+GG+eEverlR+kkde
  KKY23897.1 867 ARQRELESRRGGEFQREVERFVEEGKLKKTGGAEEVERLRRKKDE 911
                 ********************************************7 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0025       8.9      32      89 ..       7      65 ..       3      71 .. 0.82
   2 ?    3.7   0.0     0.022        78      26      58 ..     632     664 ..     615     682 .. 0.82
   3 ?    0.0   0.5      0.31   1.1e+03      43      98 ..     735     809 ..     693     812 .. 0.50

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0025
  Syntaxin_2 32 reklhelieeinelikktnellkklsqldnsssds.qqkl.qkekLkkdfkealqeFqki 89
                 +++ ++ ++++ l+ +t++ll+ l+q+++ + ++         +L  +f+ a++ F++i
  KKY23897.1  7 EKQIAQIEKSVTHLLVATKQLLETLTQWSRRQATEgE-VSdVYVRLGYEFNLACRAFNSI 65
                589***************************9987642.3335678888888888888776 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.022
  Syntaxin_2  26 kdteelreklhelieeinelikktnellkklsq 58 
                  + + lr+++  l+++ ++++++ +++l+++++
  KKY23897.1 632 SEVQSLRREIAVLRQSYSTMASDFTASLQNIKA 664
                 45899***********************99987 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.31
  Syntaxin_2  43 nelikktnellkklsqldnsssds...................qqklqkekLkkdfkealqeFqkiqrqyaekek 98 
                  +++k+++  +k+l+++++  + +                    + +q+e L+ d++  l+ +  + + ++e++k
  KKY23897.1 735 EDVSKDISLTVKELTKVKDFIKRErpvwtkiwekelnqvcqerDELTQQEDLMADLTGDLEDLSGVFKLVEEATK 809
                 333344444444444333322222333444444444444544444556666666666666666666666666655 PP

>> LemA  LemA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       2.4   8.5e+03      24      63 ..       8      47 ..       8      51 .. 0.73
   2 ?   10.6   0.0   0.00011      0.38      16     119 ..     563     663 ..     550     674 .. 0.80
   3 ?   -0.7   0.1      0.33   1.2e+03      21      68 ..     749     798 ..     736     812 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.4
        LemA 24 kgyakhEketleevteaRakaaeaesveekaeaenqlssa 63
                k++a+ Ek++ + +++ ++ +++ ++ ++++++e ++s+ 
  KKY23897.1  8 KQIAQIEKSVTHLLVATKQLLETLTQWSRRQATEGEVSDV 47
                5677888888888888888888888888888888777765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00011
        LemA  16 ipnLvetvkgyakhEketleevteaRakaaeaesveekaeaenqlssalsrllavaEnYPdLkanenfleLqeelegtEnriavaRrrYneavreyntk 114
                 i  L+e v+g+ +  ++++++  e +  +++a++++++a+       a+s   + a + P L+++++ ++  +e++++ ++iav R+ Y   ++++ ++
  KKY23897.1 563 IRRLIEGVRGAIDGQESLMQRFSERQ--LETAKDMARMAA-TPPPAPAVSISKIAATKQPGLRSTAQSSASLSEVQSLRREIAVLRQSYSTMASDFTAS 658
                 77888888888888888888877755..444666666554.444455555555667789**************************************99 PP

        LemA 115 iesfp 119
                 ++++ 
  KKY23897.1 659 LQNIK 663
                 99876 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.33
        LemA  21 etvkgyakhEketleevteaR.aka.aeaesveekaeaenqlssalsrll 68 
                   vk + k E+ + +++ e   +++ +e ++++++++  ++l++ l++l 
  KKY23897.1 749 TKVKDFIKRERPVWTKIWEKElNQVcQERDELTQQEDLMADLTGDLEDLS 798
                 46899999999999999987644446778888888888888888877764 PP

>> PKK  Polo kinase kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.7       1.6   5.6e+03      19      44 ..     762     789 ..     746     811 .. 0.51
   2 ?   14.5  11.1   7.9e-06     0.028      26     120 ..     846     940 ..     837     955 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.6
         PKK  19 lkkrydkeleql..erqqkqqiEkleqe 44 
                  +k  +kel q+  er +  q E+l  +
  KKY23897.1 762 WTKIWEKELNQVcqERDELTQQEDLMAD 789
                 4444444444432233333333333333 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 7.9e-06
         PKK  26 eleqlerqqkqqiEkleqeqaqelrelpkriraEqkkelakFkesLkqekkelkqevreklkkfqrkeklrqkkeeleqeqkee.eleflqkqqea 120
                 e+  l+ ++++ +E +e+  ++++rel  r   E ++e  +F e+ k +k+   +ev e+l++++ +e+ r++ e+ ++++    e+e l++ q+a
  KKY23897.1 846 EVRALQPNHENRLEAIERAEKARQRELESRRGGEFQREVERFVEEGKLKKTGGAEEV-ERLRRKKDEEARRENWERAAARRAGMeEREALSAAQQA 940
                 788999***************************************************.*******************9999998899999998876 PP

>> CHDCT2  CHDCT2 (NUC038) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.2     0.001       3.7      57     152 ..     636     732 ..     619     751 .. 0.83
   2 ?    0.3   0.1      0.19   6.9e+02     118     155 ..     769     806 ..     732     816 .. 0.70
   3 ?   -1.3   0.4      0.61   2.2e+03      71     119 ..     902     950 ..     873     965 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.001
      CHDCT2  57 flarrfklleqalvieeqlrraallnlqeekekvgslaqrfaelellaeshqkllkesaagnknanavlekvLnqleelLsdmkadv.srlpatlsr 152
                  l r + +l q+ +   +   a+l n++ +  +v++la++     + +++ +  +++++++  + ++ l + ++ l++l++d+++dv +r +  l+r
  KKY23897.1 636 SLRREIAVLRQSYSTMASDFTASLQNIKAKGANVQKLAASAIVPGFAGNAGRVHVEDGKKQLLEESENLVNRVDDLSDLVEDLRKDVvTRGVRPLPR 732
                 5889999999999999888899999***********************************99999999*9****************72565555554 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.19
      CHDCT2 118 nknanavlekvLnqleelLsdmkadvsrlpatlsrlrp 155
                 + n+    +  L+q e+l++d+ +d++ l  +++ ++ 
  KKY23897.1 769 ELNQVCQERDELTQQEDLMADLTGDLEDLSGVFKLVEE 806
                 444444445679999**********9999888776655 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.61
      CHDCT2  71 ieeqlrraallnl.qeekekvgslaqrfaelellaeshqkllkesaagnk 119
                 +e +lrr +  +  +e+ e++ +  + + e e l++++q  l es++++ 
  KKY23897.1 902 VE-RLRRKKDEEArRENWERAAARRAGMEEREALSAAQQAPLPESNSSEL 950
                 44.45555444444777888888888888888888888888888776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (994 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1205  (0.0672095); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.49
# Mc/sec: 6098.49
//
Query:       KKY23898.1  [L=990]
Description: putative pab1 binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-27   95.9   4.1    1.5e-27   95.9   4.1    2.1  2  LsmAD     LsmAD domain
    4.3e-13   49.2   0.0    8.3e-13   48.3   0.0    1.5  1  SM-ATX    Ataxin 2 SM domain
  ------ inclusion threshold ------
      0.024   14.0   1.2      0.046   13.1   1.2    1.4  1  YPEB      YpeB sporulation


Domain annotation for each model (and alignments):
>> LsmAD  LsmAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   4.1   2.5e-31   1.5e-27       1      71 []     259     329 ..     259     329 .. 0.97
   2 ?   -3.0   0.1       1.9   1.1e+04      42      67 ..     459     487 ..     457     488 .. 0.63

  Alignments for each domain:
  == domain 1  score: 95.9 bits;  conditional E-value: 2.5e-31
       LsmAD   1 FgvkstYdEnlYTtkldksspeykereaeAeriArEIessastnahvaeerglkvddsgldEEdkYSaVrR 71 
                 Fg k+tYdEnlYTt++++s+p+y++rea+A+++ArEIe+s+s+nah++eerg++++++  dEE+kYS+VrR
  KKY23898.1 259 FGTKTTYDENLYTTSINRSDPSYRQREAAAAKLAREIEDSTSNNAHIREERGQALETDFDDEEAKYSGVRR 329
                 9****************************************************9987779*********99 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.9
       LsmAD  42 stnahvaeerglkv..ddsg.ldEEdkYS 67 
                 s++++v+e r l++  d+++ l+E +++S
  KKY23898.1 459 SEKQKVQEKRRLQAshDRTAkLNELMRFS 487
                 55677888888876653333477777777 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   1.4e-16   8.3e-13       1      76 [.     103     186 ..     103     191 .. 0.94

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 1.4e-16
                 XXX-HHHHHTTTTSEEEEEETTS-EEEEEEEEE-T...T--EEEEEEEETTS.................-EEE.EEEE-GGGEE CS
      SM-ATX   1 ndrllflltslvGkevevtvknGevyeGifstvsl.ekdfsvvLkmarkvkk....ans..kssspssgeipd.tliikakdiv 76 
                 +drl+f+  +++G++v+vt+k+G+ ++G++s   l +++ sv+Lkm+++ ++    an+   s++ + g+  d  + ++ +d+v
  KKY23898.1 103 HDRLVFICGASIGLPVTVTTKSGDAFTGVLSNWILtANEQSVTLKMVQESTNydtsANGiaPSTQLYLGSGADhAMTFDLRDVV 186
                 8********************************9999****************9986667899999*******9********98 PP

>> YPEB  YpeB sporulation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.2   7.8e-06     0.046      66     131 ..     423     491 ..     402     537 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.8e-06
        YPEB  66 rqaseAqenlgqLPlstlelskte.kFLsqvgdfsyslakkdldgepLte..eeyktLeeLyeqakele 131
                 rqa+   +   +LPl++  ++ +e k+L+q  df++s ++k ++++ L++  +  ++L+eL + +k+++
  KKY23898.1 423 RQANSSVSPQRKLPLAENATEGVEkKLLHQFRDFANSEKQKVQEKRRLQAshDRTAKLNELMRFSKTFK 491
                 566666677789*********996369*******************99761145788999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (990 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       869  (0.048469); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 6725.97
//
Query:       KKY23899.1  [L=727]
Description: putative oligopeptide transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.8e-153  511.1  40.7   6.9e-153  510.5  40.7    1.2  1  OPT       OPT oligopeptide transporter protein


Domain annotation for each model (and alignments):
>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  510.5  40.7  3.8e-157  6.9e-153       1     568 [.      94     709 ..      94     716 .. 0.96

  Alignments for each domain:
  == domain 1  score: 510.5 bits;  conditional E-value: 3.8e-157
         OPT   1 elTlRavvlGillgvlgsavnmyfglrt............glvsissipaallafplgkalarilpk.........lslnpgpftikEnvliqtmasaa 78 
                 ++T+Ra+vl +++++l+s vn++fglr+            +++si  ++a+ll fp+g+a+++ lp+         + +npgpf+ikE++li+++++++
  KKY23899.1  94 CNTFRAWVLTTVFVTLFSGVNQFFGLRYvcfipspsvsihPSLSIGYVVAQLLVFPVGRAWEK-LPRwrlplgkysFDINPGPFSIKEHALIVICVNIS 191
                 79*************************855555544444456777889*************55.67789999**9************************ PP

         OPT  79 atlalatglivvipalelygqsagfgylillslsvqllGvgfagplRkflvypeklifPsglataellkalhkpegee......ksrlkfflivflgsf 171
                 a++a+a+g +v+i  ++++++++g+g  +l +l +q++G+g+ag+ R++lvyp+ li+Ps+l ++ l++alh+p++++      ++r++ff+++ + +f
  KKY23899.1 192 ASTAYASGSLVAIISPVYWNRDYGAGFSFLYLLTTQMIGFGLAGLSRRWLVYPAALIWPSSLSCTVLFRALHEPQEHApangwtITRYRFFGYFTIFAF 290
                 ****************99*********************************************************999********************* PP

         OPT 172 vwglfplylfpalssfswltwiapknvvlanlf....glgllpltfdwnviaayiGsglivplwvavnmliGavlswgiliPllyysngwypaylp... 263
                 v  +fp y+++ l +f+++tw ap n +++++f    glgl+p+++dw++i  y G++l++p+ +++n ++ +vl++++l+P+lyy+n+wy+aylp   
  KKY23899.1 291 VLFFFPDYIWTSLGTFAFVTWLAPHNQKVNTIFgmnsGLGLIPISIDWTQIN-YAGTPLTTPFYITCNAFAVVVLFYLFLSPILYYTNVWYSAYLPlls 388
                 ****************************************************.9********************************************* PP

         OPT 264 ..........ydvteildedgvldyekyigyglmllaalvallylvqfaaitllivhtilkhgkdikaalksarsprteeddrhrrlmrkykdvpmwwy 352
                           y++t+++de++ +   ky++y++m+++++++l+y+++faa+t+++vht l++g++i+a+lk+a   r   +d+hrrlm +yk+vp+wwy
  KKY23899.1 389 sstfdntgstYNITKVVDENLNFVLSKYEQYSPMYISMSYSLTYALSFAAVTAIVVHTYLYNGSEIWAKLKNA---RHGGEDIHRRLMYQYKEVPDWWY 484
                 *************************************************************************...*********************** PP

         OPT 353 lallvlslvigiivvealftqlpvwgll.lalllafllaivsaiiaGltglnpvsgigkltqlifgallpgrpvanlvfgavvyaaaaqagdfmqDLKt 450
                  +l +++l++gi++v ++  +lpvwg++ +++++++ll+i+ +i+ G+t++   + ++++t+li+g++ pg+p+an++++ ++y+++ +++df+qDLK+
  KKY23899.1 485 GVLTLVVLGMGILTVNYWDSGLPVWGFIvVCFGMGVLLIIPEGILEGTTNQ--RVFLNIITELIAGYAWPGKPIANMMVKCYGYNSVKHGMDFAQDLKL 581
                 *************************8652799*******************..********************************************** PP

         OPT 451 GhllkasPraqfvaqliGtlvgavvniavlkllvkaygdictadasnaftaPqakvfaavavl..lvggk.........kglpwafllgavapfillll 538
                 G+++k++Pr +fv+q+++++++ +++++vl++++ +++++c+ ++++ ft+  akv ++++ +   +g++         +g++++f++g v+++++++l
  KKY23899.1 582 GQYMKIPPRVLFVGQIYSSILATMTQTGVLRWMIGHIPNLCESTNTQRFTCNGAKVVYSASLIwgTIGPQrmfqsgqvySGIMYFFIIGPVVTVLAYML 680
                 ****************************************************************99********************************* PP

         OPT 539 lkkfpkkstarklplplafavgfylppsls 568
                  +++p +s++r++++p++f+ ++ +pp+ +
  KKY23899.1 681 YRRYP-NSWVRYINVPIFFNAAGNIPPANT 709
                 ***99.******************999863 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.47
# Mc/sec: 4629.41
//
Query:       KKY23900.1  [L=567]
Description: putative glycoside hydrolase family 61 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-53  181.5   0.0    1.9e-53  181.5   0.0    2.4  2  Glyco_hydro_61  Glycosyl hydrolase family 61
    1.8e-09   37.4  11.0    1.8e-09   37.4  11.0    2.5  2  CBM_1           Fungal cellulose binding domain
  ------ inclusion threshold ------
      0.015   15.0   0.0      0.029   14.1   0.0    1.4  1  Big_3_4         Domain of unknown function
        3.2    7.7  10.0        5.3    6.9  10.0    1.3  1  TFIIA           Transcription factor IIA, alpha/beta subunit
        4.3    5.8  11.4        5.7    5.4  11.4    1.1  1  Utp14           Utp14 protein


Domain annotation for each model (and alignments):
>> Glyco_hydro_61  Glycosyl hydrolase family 61
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.5   0.0   5.3e-57   1.9e-53       1     198 [.      19     226 ..      19     233 .. 0.87
   2 ?   -3.4   3.7       2.1   7.5e+03      89      89 ..     361     361 ..     251     451 .. 0.61

  Alignments for each domain:
  == domain 1  score: 181.5 bits;  conditional E-value: 5.3e-57
                     XEEEEEEEETTEEEE--TSSSB-B---SSS--BGGTTSCHHCCS.TTB..--S.SBEEEETTSEEEEEEES.........S....C-TT--S-EE CS
  Glyco_hydro_61   1 HgvvksltvngkeyegdpevvrwsrkakdngpvtdvtspdiaCn.kag..paa.avaevkaGdtvtfewke.........k....wissHkGpvl 78 
                     H+++ +l +ng+e+   ++ v +  + ++n++++d ts++iaCn +    p++ av++v++Gd++   w +         +    + ssHkGp++
      KKY23900.1  19 HTIFWELGINGEEQ---GSLVGVR-APSSNQYISDPTSDSIACNtG-LssPVStAVIDVNPGDEIATVWGHviggaqysgDadnpIASSHKGPIQ 108
                     99***********6...4555544.34778899***********53.3368886779*************999887766515664559******* PP

                     EEEEE-SSS-GTTT--GGGCEEEEEEEE-EETE-STEHHHHHCCTTCEEEEE--TTB-SEEEEEEEEEEE-TTTTSTT--EEEEEEEEEEEESS- CS
  Glyco_hydro_61  79 vYlakcasgddcktvdgsglkWfKideegldasakkWatdklaengaklsvtiPaslapGeYllRhEiiALhsagskggaQfYpsCaqleVtgsg 173
                     +Y+ak+a   d+++ dgsgl+WfK++ egld+s+++W +d+l++ g  +++t P +l++GeYllR E+iALhsa s+ggaQfY+sCa l+V gsg
      KKY23900.1 109 MYMAKVA---DASSDDGSGLSWFKVASEGLDTSTSTWGVDSLISGGGWWNFTMP-ELEAGEYLLRGEVIALHSAYSSGGAQFYISCAALNVGGSG 199
                     ******4...5788899****************999*******9999*******.8*************************************** PP

                     S.B.--..EEGCCSS-TTSTTTSS-TTT CS
  Glyco_hydro_61 174 t.alpe..vsfpgaykasdpgilvniye 198
                     t + p+  vsfpgay+a+d+gil+niy 
      KKY23900.1 200 TcS-PTdtVSFPGAYSADDAGILINIYG 226
                     *55.7447******************86 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.1
                     G CS
  Glyco_hydro_61  89 d 89 
                     +
      KKY23900.1 361 T 361
                     0 PP

>> CBM_1  Fungal cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       1.6   5.9e+03       6      13 ..     234     241 ..     234     251 .. 0.84
   2 !   37.4  11.0   4.9e-13   1.8e-09       1      29 []     535     563 ..     535     563 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.6
       CBM_1   6 GGigWtGp 13 
                 GG ++t p
  KKY23900.1 234 GGAAYTAP 241
                 89999987 PP

  == domain 2  score: 37.4 bits;  conditional E-value: 4.9e-13
       CBM_1   1 lwgQCGGigWtGpTtCvsgatCtyqNeyY 29 
                 l+ QCGG++W+G TtC++g  C+++N +Y
  KKY23900.1 535 LYHQCGGKNWNGTTTCDEGLSCKKWNGWY 563
                 69*************************** PP

>> Big_3_4  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     8e-06     0.029      19      66 ..     149     202 ..     141     224 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 8e-06
     Big_3_4  19 seGdiWnvpvPldedGeyvv..ellaedea....Gnqayiakllyvvdienicv 66 
                 s G +Wn ++P +e Gey++  e++a+  a    G q yi+     v +   c 
  KKY23900.1 149 SGGGWWNFTMPELEAGEYLLrgEVIALHSAyssgGAQFYISCAALNVGGSGTCS 202
                 7799**************986678888766555588999887666666665555 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  10.0    0.0015       5.3     166     337 ..     269     432 ..     233     444 .. 0.39

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0015
       TFIIA 166 sqgsaaqssvaalqaq.sqqaqalaepqqqlekqqqqqqqqqqqqqqqqvqqqqqeesqqaqqa..sqe..qvagsqvessqtdgaedaleeespvleg 259
                 s++ +a+ssvaa++a+   + +a+a ++        ++ +++++  +++++    ++s++a+++  + +  +++gs++  s+t  a ++++++s v   
  KKY23900.1 269 SSSVVASSSVAASSASvVASSSAIASSS--------TVISSAVAAVAATST---AATSSSATEPviEGStfSFTGSST--SSTAVATSESSSSS-V--- 350
                 2233333333333333211112222222........222222222222221...113344444422233334444333..33333333333311.2... PP

       TFIIA 260 elsaeeeagaqkeelsreeidrireealkakelekeskkkkraeessladlseilqlDGagddsde...........eeeeeesdedsd 337
                    a ++a+a ++++++e+ d+ ++e +++++++++       +++s++++++++ +D +  +++            ++++++s++dsd
  KKY23900.1 351 TTTAAAAAAATSTTSDAEDDDECEAETTDDSNTTET-------ASASSTAATDVAAVDATSTSTSAaaasttvaattDSSSSSSSSDSD 432
                 222222222322333333444443333222222111.......1234456677888888777777744444443333222222223333 PP

>> Utp14  Utp14 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  11.4    0.0016       5.7     482     596 ..     286     433 ..     233     465 .. 0.43

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0016
       Utp14 482 e......kskksekkkkkk.keesakeeeeeeeenpwlae...e...ekkkskkeevaaekssskakkskakakkkkkksskkkeaakekkkkdeeidl 567
                        +s+++  +++ +  ++++++++++++++p+++    +   ++ +s  +++++++sss +++++a+a+ ++ +s+++++++    +++++ d 
  KKY23900.1 286 VasssaiASSSTVISSAVAaVAATSTAATSSSATEPVIEGstfSftgSSTSSTAVATSESSSSSVTTTAAAAAAATSTTSDAEDDDE---CEAETTDDS 381
                 022223333333333333333444455555555666655543314322222222333222222222222222222222222221111...112222222 PP

       Utp14 568 kkketlkekekt.lkkkk..........................kedkeeesddde 596
                 +++et+++++ t     +                          +++++++sd+d+
  KKY23900.1 382 NTTETASASS-TaA---TdvaavdatststsaaaasttvaattdSSSSSSSSDSDS 433
                 2111111111.111...112234455556666666666655544333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1751  (0.097663); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                       130  (0.00725082); expected 17.9 (0.001)
Passed Fwd filter:                        58  (0.00323498); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.48u 0.43s 00:00:01.91 Elapsed: 00:00:00.71
# Mc/sec: 2413.29
//
Query:       KKY23901.1  [L=208]
Description: hypothetical protein UCRPC4_g02714 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1364.46
//
Query:       KKY23902.1  [L=293]
Description: putative atp binding [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-79  264.9   0.0    8.9e-79  264.7   0.0    1.0  1  ATP_bind_1       Conserved hypothetical ATP binding protein
    8.5e-05   22.6   0.0    0.00024   21.2   0.0    1.9  2  AAA_14           AAA domain
    0.00013   21.9   0.0    0.00027   20.8   0.0    1.5  1  CLP1_P           mRNA cleavage and polyadenylation factor CLP
    0.00028   21.3   0.0     0.0047   17.3   0.0    2.2  2  AAA_16           AAA ATPase domain
     0.0011   19.6   0.0     0.0022   18.5   0.0    1.7  1  AAA_18           AAA domain
     0.0019   18.5   0.0     0.0042   17.3   0.0    1.7  1  AAA_22           AAA domain
     0.0019   18.5   0.0        0.1   12.9   0.0    2.2  2  AAA_19           AAA domain
     0.0022   17.8   0.0     0.0046   16.7   0.0    1.6  1  AAA_24           AAA domain
      0.003   18.0   0.0     0.0063   16.9   0.0    1.5  1  AAA              ATPase family associated with various cellul
      0.007   15.9   0.0      0.025   14.1   0.0    1.8  2  AAA_7            P-loop containing dynein motor region
     0.0071   15.4   0.0      0.013   14.6   0.0    1.4  1  T2SSE            Type II/IV secretion system protein
     0.0073   16.7   0.0      0.019   15.4   0.0    1.7  1  RNA_helicase     RNA helicase
     0.0075   16.4   0.0       0.01   16.0   0.0    1.4  1  AAA_33           AAA domain
     0.0082   15.9   0.0      0.035   13.8   0.0    1.8  2  AAA_30           AAA domain
  ------ inclusion threshold ------
      0.012   15.6   0.0      0.021   14.8   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.013   15.4   0.0      0.024   14.5   0.0    1.4  1  NACHT            NACHT domain
      0.014   15.0   0.0      0.024   14.3   0.0    1.3  1  SRP54            SRP54-type protein, GTPase domain
      0.034   14.6   0.0       0.12   12.9   0.0    1.8  2  ABC_tran         ABC transporter
      0.036   13.7   0.1       0.54    9.8   0.0    2.2  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.045   13.1   0.0        0.2   11.0   0.0    1.8  2  ATPase           KaiC
      0.049   13.7   0.0      0.071   13.2   0.0    1.3  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
      0.051   13.1   0.1        5.2    6.6   0.0    2.2  2  GTP_EFTU         Elongation factor Tu GTP binding domain
      0.053   13.4   0.0       0.19   11.6   0.0    1.8  2  ATPase_2         ATPase domain predominantly from Archaea
      0.073   12.2   0.0       0.17   11.0   0.0    1.5  1  ArsA_ATPase      Anion-transporting ATPase
      0.084   11.8   0.0       0.16   10.9   0.0    1.4  1  DUF463           YcjX-like family, DUF463
      0.087   12.6   0.0       0.25   11.1   0.0    1.7  1  PduV-EutP        Ethanolamine utilisation - propanediol utili
      0.091   12.5   0.0       0.18   11.5   0.0    1.5  1  IstB_IS21        IstB-like ATP binding protein
      0.092   12.7   0.0        8.8    6.2   0.0    2.4  2  AAA_31           AAA domain
      0.095   12.6   0.0       0.18   11.7   0.0    1.4  1  NTPase_1         NTPase
        0.1   12.3   0.0       0.16   11.7   0.0    1.2  1  Sigma54_activat  Sigma-54 interaction domain
       0.15   12.0   0.1        1.4    8.8   0.0    2.1  2  RsgA_GTPase      RsgA GTPase
       0.16   11.8   0.0       0.27   11.0   0.0    1.4  1  AAA_29           P-loop containing region of AAA domain
       0.17   12.3   0.0       0.44   11.0   0.0    1.7  1  AAA_17           AAA domain
       0.18   11.4   0.0       0.35   10.5   0.0    1.5  1  Thymidylate_kin  Thymidylate kinase


Domain annotation for each model (and alignments):
>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.7   0.0   1.7e-81   8.9e-79       1     241 []       8     270 ..       8     270 .. 0.96

  Alignments for each domain:
  == domain 1  score: 264.7 bits;  conditional E-value: 1.7e-81
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvavvNLDPAaeelpYeaavdirelitledvmedlglgpngalvvaleflresldwldeeleke.eddyllfDt 98 
                 v+GpaG+GKttf++al+++l+ + rs+ +vNLDPAa+ ++Ye+++di++litledvme++glgpng+l++++efl ++ld l+++l+   e+ +++fD 
  KKY23902.1   8 VMGPAGAGKTTFCSALIQHLQHSRRSCFYVNLDPAADDFAYEPDLDIKDLITLEDVMEEMGLGPNGGLIYCFEFLLQNLDFLSSALDSVtEEYLIIFDL 106
                 89************************************************************************************9986778999*** PP

  ATP_bind_1  99 PGQielfthseslakiveeLes....efalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDllkek.lekeleffedvealslllek 192
                 PGQiel+th + l ++v++L++    +++l+++yL++++++ d +kf+ g+lsa+sam++lelPhv++l+k+Dl+k+  ++ el++f d++a    +e+
  KKY23902.1 107 PGQIELYTHIPLLPQLVRHLSRmgplNISLCATYLLEATFVVDRAKFFAGTLSAMSAMINLELPHVNILSKLDLVKDMvSKTELKRFVDPDAQLMEEEE 205
                 *********************98899999***********************************************88************765554444 PP

  ATP_bind_1 193 ee..................ekykklaeaiaelleefalvlrflplssekeesiedllslidealqe 241
                  +                  + +++l++a+a+l+++f++v +fl+l++++ees+ ++ls+id+a+q+
  KKY23902.1 206 -TvpladiddpnkkdaimsgGSFQQLNRAVARLIDDFSMV-QFLQLDAQDEESVGAILSYIDDAIQY 270
                 .459****************99******************.***********************996 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   4.5e-07   0.00024       5      53 ..       6      55 ..       2     105 .. 0.80
   2 ?   -2.3   0.0       7.9   4.2e+03     101     101 ..     226     226 ..     181     256 .. 0.58

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 4.5e-07
      AAA_14  5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe.kll 53
                ++++G+  +GKTt++  li++l  +++s++y+nld   d+ + +p+ ++ 
  KKY23902.1  6 VLVMGPAGAGKTTFCSALIQHLQHSRRSCFYVNLDPAADDFAYEPDlDIK 55
                789****************99999***********988844334433233 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.9
      AAA_14 101 n 101
                 +
  KKY23902.1 226 S 226
                 2 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   5.1e-07   0.00027       1      38 [.      10      47 ..      10      49 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5.1e-07
      CLP1_P  1 GpkdsGKSTlarlLlNyalrkgrkpvyvDlDvGqseis 38
                Gp  +GK+T++  L++ + ++ r++ yv+lD+   +++
  KKY23902.1 10 GPAGAGKTTFCSALIQHLQHSRRSCFYVNLDPAADDFA 47
                8999*************988888888******988876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   8.9e-06    0.0047      26      83 ..       5      65 ..       2     130 .. 0.81
   2 ?    2.1   0.0      0.43   2.3e+02      72     129 ..     171     240 ..     122     267 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 8.9e-06
      AAA_16 26 lvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy...salaqalareellr 83
                 vl+ G++G GK++   +l ++l+ ++  +++ + d    + +y   + + ++++ e++++
  KKY23902.1  5 GVLVMGPAGAGKTTFCSALIQHLQHSRRSCFYVNLDPAADDFAYepdLDIKDLITLEDVME 65
                59*******************9999987777777777766677766444666666655555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.43
      AAA_16  72 laqalareellrqlldeaesaeleawrekleeala.......avpelagaea............srllellkrllal 129
                  +++l++ +l++++ +++e + + + +++l e+ +       +       ++            ++l+++++rl++ 
  KKY23902.1 171 HVNILSKLDLVKDMVSKTELKRFVDPDAQLMEEEEtvpladiD-------DPnkkdaimsggsfQQLNRAVARLIDD 240
                 5556666688888888877777777777776666644333330.......334455566667778888888888843 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   4.2e-06    0.0022       1      25 [.       6      40 ..       6     113 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 4.2e-06
      AAA_18  1 IlltGtpGvGKttlakeLskrl.gf.........g 25
                +l++G++G+GKtt++ +L ++l ++          
  KKY23902.1  6 VLVMGPAGAGKTTFCSALIQHLqHSrrscfyvnlD 40
                79****************77762223333433331 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     8e-06    0.0042       7      48 ..       5      40 ..       1     102 [. 0.85

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 8e-06
      AAA_22  7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlp 48
                 ++v+G++G+GKTt +  l + l+        r+++++v+l 
  KKY23902.1  5 GVLVMGPAGAGKTTFCSALIQHLQHS------RRSCFYVNLD 40
                579*******************9644......7777777765 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00019       0.1      13      38 ..       6      31 ..       1      44 [. 0.87
   2 ?    3.7   0.0      0.13        69      77     118 ..     197     248 ..      92     254 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00019
      AAA_19 13 llvtaGpGtGKTrvlkhivallvelg 38
                +lv++++G GKT+   + +++l++ +
  KKY23902.1  6 VLVMGPAGAGKTTFCSALIQHLQHSR 31
                79********************9876 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.13
      AAA_19  77 l............ldfddlltealelleeaeeekklqeeellivDEfqdvdelq 118
                               d+dd +++ + +  +  + ++l+++ + ++D f++v+ lq
  KKY23902.1 197 DaqlmeeeetvplADIDDPNKKDAIM--SGGSFQQLNRAVARLIDDFSMVQFLQ 248
                 05554555555545556655444433..445567886666999*******9877 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   8.8e-06    0.0046       2      55 ..       3      66 ..       2     103 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 8.8e-06
      AAA_24  2 klkiliyGpsgiGKTtlakel.......gpkplfidtekGlksldadkfpdie...swedflde 55
                k+ +l++Gp+g+GKTt+++ l         + ++++++  +++       di+   ++ed+++e
  KKY23902.1  3 KYGVLVMGPAGAGKTTFCSALiqhlqhsRRSCFYVNLDPAADDFAYEPDLDIKdliTLEDVMEE 66
                6789****************99999988888899999988888887777777755555555554 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.2e-05    0.0063       1      32 [.       6      40 ..       6      65 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.2e-05
                EEEESSTTSSHHHHHHHHHHHHT...HEEEEEETT CS
         AAA  1 vllyGppGtGKTllakavakelg...vefleisgs 32
                vl++Gp G GKT++++a++++l+   ++++ +++ 
  KKY23902.1  6 VLVMGPAGAGKTTFCSALIQHLQhsrRSCFYVNLD 40
                799******************96444556666655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   4.8e-05     0.025      33      69 ..       3      39 ..       1      45 [. 0.88
   2 ?   -1.4   0.0       2.6   1.4e+03     102     120 ..     234     252 ..     228     272 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.8e-05
       AAA_7 33 kkpvllvGptGtGKtviikdllkkldkekylsltinf 69
                k+ vl++Gp+G GKt+ ++ l+++l++++ ++  +n+
  KKY23902.1  3 KYGVLVMGPAGAGKTTFCSALIQHLQHSRRSCFYVNL 39
                6789**********************99888888876 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.6
       AAA_7 102 lvvFvDDlnmpakekygaq 120
                 +   +DD++m +  + +aq
  KKY23902.1 234 VARLIDDFSMVQFLQLDAQ 252
                 5667999999987666666 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.5e-05     0.013     129     158 ..       3      32 ..       1      44 [. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.5e-05
       T2SSE 129 rglilvsGgTgsGKttllyallkeinksde 158
                 ++ +lv G+ g GKtt+  al++ +++s +
  KKY23902.1   3 KYGVLVMGPAGAGKTTFCSALIQHLQHSRR 32 
                 6679*********************99843 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.5e-05     0.019       1      36 [.       6      37 ..       6      56 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.5e-05
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallkklklkkkdsvys 36
                  +++ Gp+g GK+t++  L+++l+ +    +++ +y+
    KKY23902.1  6 VLVMGPAGAGKTTFCSALIQHLQHS----RRSCFYV 37
                  5799*************99999833....3445554 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.9e-05      0.01       2      40 ..       6      49 ..       6     153 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.9e-05
      AAA_33  2 vllvGlpGsGKstlaerllkklg.....avllssdtlrrrlfgt 40
                vl+ G++G+GK+t+   l+++l+     ++ ++ d + +  +++
  KKY23902.1  6 VLVMGPAGAGKTTFCSALIQHLQhsrrsCFYVNLDPAADDFAYE 49
                7899**************99999888887777777766655554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   6.7e-05     0.035      21      47 ..       6      32 ..       2      45 .. 0.85
   2 ?   -0.9   0.0       2.2   1.1e+03      82     103 ..     226     247 ..     195     258 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.7e-05
      AAA_30 21 avltGpAGtGKttalkalreaweaagg 47
                +++ GpAG+GKtt  +al ++++++ +
  KKY23902.1  6 VLVMGPAGAGKTTFCSALIQHLQHSRR 32
                5789**************999998754 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.2
      AAA_30  82 grarlepgtllivDEagmvdtk 103
                 + ++l+++   ++D  +mv + 
  KKY23902.1 226 SFQQLNRAVARLIDDFSMVQFL 247
                 2334444444455555555555 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.9e-05     0.021      22      46 ..       6      30 ..       1      37 [. 0.87

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.9e-05
                EEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE 22 ilLeGdLGaGKTtlvrglakalgve 46
                +l  G+ GaGKTt++ +l+++l+++
  KKY23902.1  6 VLVMGPAGAGKTTFCSALIQHLQHS 30
                7889******************986 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.6e-05     0.024       3      29 ..       6      32 ..       5      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.6e-05
                EEEEC-TTTCHHHHHHHHHHHHCTS-S CS
       NACHT  3 vilqGeaGsGKTtLlqklalawaegkl 29
                v++ G+aG GKTt+   l++ +++++ 
  KKY23902.1  6 VLVMGPAGAGKTTFCSALIQHLQHSRR 32
                7899******************99884 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.5e-05     0.024       4      38 ..       6      40 ..       3      43 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.5e-05
                EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEES CS
       SRP54  4 illvGlqGaGKTttlaKLaallkkegkkvllvaaD 38
                +l++G+ GaGKTt ++ L ++l+++ +++  v +D
  KKY23902.1  6 VLVMGPAGAGKTTFCSALIQHLQHSRRSCFYVNLD 40
                799*********************99999888777 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00023      0.12      14      37 ..       6      29 ..       3      45 .. 0.89
   2 ?   -1.6   0.0       6.8   3.6e+03      90     117 ..     205     230 ..     161     245 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00023
                EEEEESTTSSHHHHHHHHTTSS-- CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkp 37
                v ++G+ GaGK+t++++l+++l+ 
  KKY23902.1  6 VLVMGPAGAGKTTFCSALIQHLQH 29
                5689**************998875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 6.8
                 HHSTTGGTTCBGESTTSGGS-HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrv 117
                 +++ l +++d   +++++ +SgG  q +
  KKY23902.1 205 ETVPLADIDDP--NKKDAIMSGGSFQQL 230
                 34444442222..345567788876665 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0     0.001      0.54       4      27 ..       7      30 ..       5      38 .. 0.81
   2 ?    1.4   0.0      0.39   2.1e+02     118     163 ..     147     191 ..     133     203 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.001
                EEEESTTCCHHHHHHHHHCT--SS CS
        cobW  4 vltGflGsGKTtLlnhllenragl 27
                ++ G+ G+GKTt+ ++l+++ ++ 
  KKY23902.1  7 LVMGPAGAGKTTFCSALIQHLQHS 30
                689**************9665544 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.39
                 EEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHHH CS
        cobW 118 vvDaknleaeeekieekaedqlaaadllvlnKtDlldeeallekle 163
                 vvD +++  +++ ++  a   l+   + +l+K Dl+++  + ++l+
  KKY23902.1 147 VVDRAKF-FAGTLSAMSAMINLELPHVNILSKLDLVKDMVSKTELK 191
                 6666666.35556666666778888899********9985545544 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00037       0.2      22      63 ..       6      46 ..       2      59 .. 0.84
   2 ?   -0.9   0.0       1.7   8.7e+02      69     120 ..     222     273 ..     214     275 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00037
      ATPase 22 vlitGepGtGKtifalqFlikgaekygepgvfvtveepaedl 63
                vl++G +G+GKt+f+   li+ +++  + + +v ++  a d+
  KKY23902.1  6 VLVMGPAGAGKTTFCSA-LIQHLQHSRRSCFYVNLDPAADDF 46
                89*************98.566667779999999999888776 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.7
      ATPase  69 slGwdlekleeegklaiidasesaeesaeekdkedleelieelaeaikeika 120
                 + G  +++l++     i d s+ +  +  ++d+e++ ++++ + +ai+  +a
  KKY23902.1 222 MSGGSFQQLNRAVARLIDDFSMVQFLQLDAQDEESVGAILSYIDDAIQYHEA 273
                 5677788888888888888888888888889999999999999999987665 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   0.00013     0.071       8      55 ..      12     150 ..       6     244 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00013
                 TTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH.................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................... RF
        CbiA   8 GGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep.................................................... 54 
                  G+GKTt++ +L++ l+  ++  + v +Dp a   a+    e+d++                                                     
  KKY23902.1  12 AGAGKTTFCSALIQHLQHSRRSCFYVNLDPAADDFAY----EPDLDIkdlitledvmeemglgpnggliycfefllqnldflssaldsvteeyliifdl 106
                 59*****************************988874....3333334333455555666666666666666666666666666666666666666666 PP

                 ...........................................C CS
                 ...........................................x RF
        CbiA  55 ...........................................d 55 
                                                             
  KKY23902.1 107 pgqielythipllpqlvrhlsrmgplnislcatylleatfvvdR 150
                 66666666555555555555555555555555555555555550 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0098       5.2       6      29 ..       6      29 ..       3      37 .. 0.87
   2 ?    4.4   0.1     0.046        24     111     192 ..     157     268 ..     144     270 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0098
                EEEEESTTSSHHHHHHHHHHHTTS CS
    GTP_EFTU  6 igiighvDhGKtTLtdrLlyktga 29
                + ++g   +GKtT++ +L+++++ 
  KKY23902.1  6 VLVMGPAGAGKTTFCSALIQHLQH 29
                6899***************98766 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.046
                 HHHHHHHHHHTTTEEEEEEESCGST.....HHHHHHHHHHHHHHHHHH......................HHHHHHHHHTTT.............TTEE CS
    GTP_EFTU 111 teevlrlalkegvpiivfiNKmDrl.....kaelkeiveevkqklsrk......................eeklekygekge.............kevp 169
                 t   +  ++++++p + ++ K+D +     k+elk+ v+   q ++++                                 +             + v+
  KKY23902.1 157 TLSAMSAMINLELPHVNILSKLDLVkdmvsKTELKRFVDPDAQLMEEEetvpladiddpnkkdaimsggsF----------QqlnravarliddfSMVQ 245
                 66678889999**************8888877777777766655544455565555555544444443330..........033444444444456777 PP

                 EEEEBTTTTBTHHHHHHHHHHHS CS
    GTP_EFTU 170 vvfgSalkgegvktllealvell 192
                 ++   a + e v ++l+++++ +
  KKY23902.1 246 FLQLDAQDEESVGAILSYIDDAI 268
                 77777777777777777777665 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00037      0.19      23      57 ..       6      39 ..       3      60 .. 0.85
   2 ?   -1.1   0.0       2.7   1.4e+03     120     222 ..     234     263 ..     177     272 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00037
    ATPase_2 23 yfiYGpegsGKtaLlkeiienledkdkyviyyial 57
                +++ Gp g GKt++   +i+ l+++  +  +y +l
  KKY23902.1  6 VLVMGPAGAGKTTFCSALIQHLQHSR-RSCFYVNL 39
                5799******************7765.56666665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.7
    ATPase_2 120 iiiiiDelqklidlglngaellvkeLlnliesltkekhlcvviclsSeglfiervyneselegrhkyilvddldketalnflkegfkeleelskedfee 218
                 ++ +iD++ ++  l+l+                                                                          + +e++  
  KKY23902.1 234 VARLIDDFSMVQFLQLD-------------------------------------------------------------------------AQDEESVGA 259
                 33445555554444444.........................................................................333333444 PP

    ATPase_2 219 iyry 222
                 i +y
  KKY23902.1 260 ILSY 263
                 4333 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00033      0.17       4      41 ..       6      43 ..       4      53 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00033
                 EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-STTT CS
  ArsA_ATPase  4 ilvgGKGGVGKttvsaatavklsekgkkvllistDPAh 41
                 +lv G  G GKtt  +a+  +l +++++   + +DPA 
   KKY23902.1  6 VLVMGPAGAGKTTFCSALIQHLQHSRRSCFYVNLDPAA 43
                 6889999*****************************95 PP

>> DUF463  YcjX-like family, DUF463
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0003      0.16       5      29 ..       8      32 ..       6      51 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0003
      DUF463  5 vTGLsraGKtvfitsLvnqLlaaek 29
                v G ++aGKt+f ++L+++L ++++
  KKY23902.1  8 VMGPAGAGKTTFCSALIQHLQHSRR 32
                668899**************97665 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00048      0.25       4      23 ..       6      25 ..       2      44 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00048
   PduV-EutP  4 illiGkvgsGKttLtqalkg 23
                +l++G+ g+GKtt + al +
  KKY23902.1  6 VLVMGPAGAGKTTFCSALIQ 25
                89*************99865 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00034      0.18      48      83 ..       4      39 ..       1      49 [. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00034
   IstB_IS21 48 enivllGpsGvGKshlaialgveavraglsvlfvrv 83
                 +++++Gp+G+GK+ +  al ++  ++  s ++v +
  KKY23902.1  4 YGVLVMGPAGAGKTTFCSALIQHLQHSRRSCFYVNL 39
                5799****************9999999889888875 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.017       8.8      12      42 ..      13      43 ..      10      67 .. 0.92
   2 ?    4.1   0.0     0.075        40     104     136 ..      86     117 ..      55     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.017
      AAA_31 12 GvGKTTtsvnlaaalaklgkkvLlvDlDpQa 42
                G GKTT + +l + l ++      v+lDp a
  KKY23902.1 13 GAGKTTFCSALIQHLQHSRRSCFYVNLDPAA 43
                99**************************965 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.075
      AAA_31 104 eeilkellekvkdeYDyiiiDcpPsLglltena 136
                  + l+++l++v +eY +ii+D p +++l+t   
  KKY23902.1  86 LDFLSSALDSVTEEY-LIIFDLPGQIELYTHIP 117
                 456899*********.99**********99865 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00034      0.18       2      26 ..       6      30 ..       5      37 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00034
                EEEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellkss 26
                v++ Gp G GKtT+++ +++ l++s
  KKY23902.1  6 VLVMGPAGAGKTTFCSALIQHLQHS 30
                6899*****************9876 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0003      0.16      23      58 ..       4      39 ..       1      49 [. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0003
                     S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEET CS
  Sigma54_activat 23 lsvlitGesGtGKellaraiheaskrkekpfvavnc 58
                       vl++G  G+GK+++ +a+ ++ ++++++   vn 
       KKY23902.1  4 YGVLVMGPAGAGKTTFCSALIQHLQHSRRSCFYVNL 39
                     679****************98876666666655554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0026       1.4     102     124 ..       6      28 ..       1      34 [. 0.84
   2 ?    0.7   0.0      0.82   4.3e+02      46      72 ..     168     193 ..     152     224 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0026
                  EEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpele 124
                  ++++G+ G+GK+t+  al+++l+
   KKY23902.1   6 VLVMGPAGAGKTTFCSALIQHLQ 28 
                  5789*************999876 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.82
                  T-EEEEEEE-GGG--HHHHHHHHHHHH CS
  RsgA_GTPase  46 giepvivlnKiDlleeeeeleelkeel 72 
                  +++ v +l+K+Dl++++   ++  +++
   KKY23902.1 168 ELPHVNILSKLDLVKDMV-SKTELKRF 193
                  55667789******9998.44444444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00052      0.27      23      44 ..       5      25 ..       1      36 [. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00052
      AAA_29 23 gatlltGpsGsGKSTllDAiqa 44
                g +l++Gp G+GK+T+  A++ 
  KKY23902.1  5 G-VLVMGPAGAGKTTFCSALIQ 25
                4.89***********9988765 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00083      0.44       2      20 ..      10      28 ..       9      33 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00083
                E-TTSSHHHHHHHHHHHHT CS
      AAA_17  2 GgPGsGKgtqceklvekyg 20
                G+ G+GK+t c+ l ++++
  KKY23902.1 10 GPAGAGKTTFCSALIQHLQ 28
                99*************9986 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00067      0.35       3      27 ..      10      35 ..       8      47 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00067
                     ESTTSSHHHHHHHHHHHHHHTTE..E CS
  Thymidylate_kin  3 GlDGaGKttqaellkerlkeegik.v 27
                     G  GaGKtt++ +l ++l+ + ++  
       KKY23902.1 10 GPAGAGKTTFCSALIQHLQHSRRScF 35
                     677****************9988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                       111  (0.00619109); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 1802.13
//
Query:       KKY23903.1  [L=387]
Description: putative s-adenosylmethionine synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-65  218.2   0.3    2.9e-64  215.2   0.0    2.1  2  S-AdoMet_synt_C  S-adenosylmethionine synthetase, C-terminal 
    2.7e-46  156.7   0.0    6.8e-46  155.4   0.0    1.7  2  S-AdoMet_synt_M  S-adenosylmethionine synthetase, central dom
    2.2e-44  150.2   0.8    4.1e-44  149.3   0.1    1.8  2  S-AdoMet_synt_N  S-adenosylmethionine synthetase, N-terminal 
  ------ inclusion threshold ------
       0.08   11.7   0.4       0.42    9.4   0.1    2.0  2  AdoMet_Synthase  S-adenosylmethionine synthetase (AdoMet synt


Domain annotation for each model (and alignments):
>> S-AdoMet_synt_C  S-adenosylmethionine synthetase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1       0.1   4.5e+02      63     102 ..     174     218 ..     170     236 .. 0.58
   2 !  215.2   0.0   6.5e-68   2.9e-64       1     137 [.     244     380 ..     244     381 .. 0.99

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.1
                      EEEEEEE-TT-SS-S.....EEEEEE-S-BSS-HHHHHHHHHHH- CS
  S-AdoMet_synt_C  63 vevqlsYaigvaepv.....sisvetfgtekvseeeiaeivkevf 102
                       +v + Ya +    v     ++ v+ ++ e++s+ee+ + +ke++
       KKY23903.1 174 TQVTVEYAHDGGAVVplrvdTVVVSAQHAETISTEELRKEIKEKI 218
                      456666665444444113334455555666677777777777654 PP

  == domain 2  score: 215.2 bits;  conditional E-value: 6.5e-68
                      S-TTTTS-EETTS-TTTTTTTTSS---S---TTB-TTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEE-TT-SS-SEEEEEE-S-BSS-HHHH CS
  S-AdoMet_synt_C   1 iGgpkgdaGltgrkiivdtYgglaahgggafsgKdptkvDrsaayaaryvaknlvaaglakkvevqlsYaigvaepvsisvetfgtekvseeei 94 
                      iGgp+gdaGltgrkiivdtYgg++ahgggafsgKd++kvDrsaay ar++ak+lv+++la++ +vqlsYaig+aep+s++vet+gt+  s+ee+
       KKY23903.1 244 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYSKVDRSAAYLARWIAKSLVHSKLARRALVQLSYAIGIAEPTSLFVETYGTSDKSSEEL 337
                      8********************************************************************************************* PP

                      HHHHHHH----HHHHHHHHTTTSS--TGGGSS-SSS--T-TTS CS
  S-AdoMet_synt_C  95 aeivkevfdlrpaaiieeldLkkpiykktaayghfgreelpwe 137
                      +eiv ++fdlrp+ i++el+L++piy kta++ghf +++++we
       KKY23903.1 338 VEIVLKNFDLRPGVIVKELNLTNPIYCKTAKNGHFSDQSFTWE 380
                      ******************************************9 PP

>> S-AdoMet_synt_M  S-adenosylmethionine synthetase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.1   9.5e+03      85     103 ..      23      41 ..      10      55 .. 0.64
   2 !  155.4   0.0   1.5e-49   6.8e-46       2     120 .]     122     242 ..     121     242 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.1
  S-AdoMet_synt_M  85 eklredlkekvikkvlkee 103
                      +k+++++ + v++++lke+
       KKY23903.1  23 DKIADQVSDAVLDACLKED 41 
                      5666777777776666544 PP

  == domain 2  score: 155.4 bits;  conditional E-value: 1.5e-49
  S-AdoMet_synt_M   2 igAgDqGimfGYAtdeteelmPlpillahklaerlaelrkegeleylrpDaKsqvtveYee...elkpvrvdtvvistqhdeevsqeklredlk 92 
                      +gAgDqGimfGYAtdet+el+P++++lahkl   ++e r++g+l++lrpD+K+qvtveY +   +  p+rvdtvv+s+qh+e++s+e+lr+++k
       KKY23903.1 122 LGAGDQGIMFGYATDETPELLPMTVQLAHKLNAAMTESRNNGTLPWLRPDTKTQVTVEYAHdggAVVPLRVDTVVVSAQHAETISTEELRKEIK 215
                      7**********************************************************6557899**************************** PP

  S-AdoMet_synt_M  93 ekvikkvlkeelldekktkllinptGkF 120
                      ek+ikkv++++lld+k t ++i+p+G F
       KKY23903.1 216 EKIIKKVIPAKLLDDK-TIYHIQPSGLF 242
                      ***********99885.*********88 PP

>> S-AdoMet_synt_N  S-adenosylmethionine synthetase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.3   0.1   9.1e-48   4.1e-44       2      99 .]      10     107 ..       9     107 .. 0.99
   2 ?   -2.4   0.1       1.8   8.1e+03      33      50 ..     171     188 ..     167     223 .. 0.46

  Alignments for each domain:
  == domain 1  score: 149.3 bits;  conditional E-value: 9.1e-48
  S-AdoMet_synt_N   2 ylftsesVseGHPDkvadqisdaildailkedpkarvacetlvttglvvvageittkakvdiekivrevikeigYekeelgfdaktcevlvale 95 
                      +lftsesV eGHPDk+adq+sda+lda+lkedp ++vacet+++tg+++v+geittka++d++ki+r++ik+igY+++++gfd+ktc+vlva+e
       KKY23903.1  10 FLFTSESVGEGHPDKIADQVSDAVLDACLKEDPLSKVACETATKTGMIMVFGEITTKARLDYQKIIRNTIKDIGYDDSSKGFDYKTCNVLVAIE 103
                      89******************************************************************************************** PP

  S-AdoMet_synt_N  96 eqsp 99 
                      eqsp
       KKY23903.1 104 EQSP 107
                      ***7 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
  S-AdoMet_synt_N  33 dpkarvacetlvttglvv 50 
                      d+k++v++e +   g vv
       KKY23903.1 171 DTKTQVTVEYAHDGGAVV 188
                      555566666555444332 PP

>> AdoMet_Synthase  S-adenosylmethionine synthetase (AdoMet synthetase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   9.3e-05      0.42      22      43 ..      15      36 ..       5      51 .. 0.87
   2 ?    0.0   0.0     0.064   2.9e+02      89     181 ..      61     153 ..      43     220 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 9.3e-05
                     EEE-TTSHHHHHHHHHHHHHHH CS
  AdoMet_Synthase 22 ErKGiGHPDsiaDgiaeavsra 43
                     E  G GHPD+iaD++++av  a
       KKY23903.1 15 ESVGEGHPDKIADQVSDAVLDA 36
                     67799************99655 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.064
                      EEEEEEE.EEE--HHHHHHHHHHHH.HHHH-SS--TTTSEEEEEEEEEEEEHHHHHHCH-SS...-BESSSEEEEEEES--HHHH..HHHHHHH CS
  AdoMet_Synthase  89 gratkevegekipveeialeaakey.lkenlraldlekdvivdvklgkgsadLkdvferkkk.evplaNDtSfgvgyaplselek..lvleter 178
                      g  t+   + ++++++i+ +++k+   +++ + +d +    v v +++ s d+ +  + +++ e   a D  +  gya   + e   + +++ +
       KKY23903.1  61 GEITT---KARLDYQKIIRNTIKDIgYDDSSKGFDYK-TCNVLVAIEEQSPDIAQGLHYDEAlEKLGAGDQGIMFGYATDETPELlpMTVQLAH 150
                      44444...56789999999999987345556667765.67777888888888887766666656678888888888887655554113344444 PP

                      HHT CS
  AdoMet_Synthase 179 lln 181
                      +ln
       KKY23903.1 151 KLN 153
                      454 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2454.31
//
Query:       KKY23904.1  [L=450]
Description: putative pre-mrna-splicing factor prp46 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.3e-41  137.6  15.4    3.6e-09   37.1   0.1    7.3  7  WD40         WD domain, G-beta repeat
    4.8e-06   26.8   0.6        4.8    7.6   0.0    5.4  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.029   13.0   4.2         10    4.7   0.0    4.3  5  Nup160       Nucleoporin Nup120/160
      0.043   14.0   0.3       0.95    9.7   0.1    2.8  3  W_rich_C     Tryptophan-rich Synechocystis species C-terminal


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.1     8e-13   3.6e-09       1      38 []     131     169 ..     131     169 .. 0.94
   2 !   28.6   0.0     4e-10   1.8e-06       4      38 .]     176     211 ..     173     211 .. 0.93
   3 !   27.6   0.3   8.2e-10   3.7e-06       2      38 .]     216     253 ..     215     253 .. 0.96
   4 !   22.2   0.3   4.2e-08   0.00019       2      38 .]     258     295 ..     257     295 .. 0.85
   5 !   10.2   0.0   0.00026       1.2       1      38 []     299     336 ..     299     336 .. 0.91
   6 !    8.7   0.0   0.00075       3.3       4      38 .]     343     377 ..     340     377 .. 0.84
   7 !    8.5   0.0   0.00087       3.9      18      38 .]     407     427 ..     380     427 .. 0.75

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 8e-13
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++++r+ +GH ++v++la+ p++ w+asG  D+t++iWd
  KKY23904.1 131 WKLMRVVSGHlGWVRALAVEPNNEWFASGAGDRTIKIWD 169
                 68899************************56*******9 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 4e-10
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                   tltGH s v++la+sp +++l+s+++D+ v+ Wd
  KKY23904.1 176 RLTLTGHiSTVRGLAVSPRHPYLFSCGEDKMVKCWD 211
                 5689*******************************9 PP

  == domain 3  score: 27.6 bits;  conditional E-value: 8.2e-10
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + +r++ GH s+v+ l+ +p  + l++G++Dg  r+Wd
  KKY23904.1 216 KVIRHYHGHlSGVYTLSLHPTLDVLVTGGRDGVARVWD 253
                 5689*********************************9 PP

  == domain 4  score: 22.2 bits;  conditional E-value: 4.2e-08
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++++l+GH + v++++ +   + ++++s D tvr+Wd
  KKY23904.1 258 SNIHVLSGHrGTVSDVKCQEADPQVITSSLDSTVRLWD 295
                 689******988999987777777788999*******9 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.00026
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g+++++lt H ++v+sla +p    +as+s  g ++ W+
  KKY23904.1 299 GKTMGVLTHHkKGVRSLAIHPREFTFASSS-AGAIKQWK 336
                 578899**9*999*********99999999.99999995 PP

  == domain 6  score: 8.7 bits;  conditional E-value: 0.00075
                 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 ++ ++G +s v+ l+++ d  ++ sG d+g+  +Wd
  KKY23904.1 343 MQNFSGENSiVNTLSVNEDDVLF-SGADNGSMSFWD 377
                 67789997757***999999996.8*99*******9 PP

  == domain 7  score: 8.5 bits;  conditional E-value: 0.00087
                 EETTSSEEEEEETTSEEEEEE CS
        WD40  18 fspdgawlasGsdDgtvriWd 38 
                 f++ g  l+ G  D+t+++W+
  KKY23904.1 407 FDKTGLRLIVGEADKTIKVWK 427
                 6777777788*77*******6 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0011       4.8      39      76 ..     142     179 ..     126     189 .. 0.85
   2 !    4.9   0.0    0.0073        33      39      79 ..     184     224 ..     177     234 .. 0.88
   3 !    4.9   0.1     0.007        32      27      86 ..     215     272 ..     204     278 .. 0.79
   4 ?    4.1   0.0     0.013        57      28      81 ..     250     310 ..     231     320 .. 0.67
   5 ?    2.4   0.0     0.043   1.9e+02      37      80 ..     349     391 ..     333     400 .. 0.81
   6 ?   -0.4   0.0      0.32   1.5e+03      43      74 ..     404     435 ..     394     443 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0011
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  + vr+La +p+++ +a +  d ++++ d  +g +  +l
   KKY23904.1 142 GWVRALAVEPNNEWFASGAGDRTIKIWDLATGSLRLTL 179
                  569****************************9987666 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0073
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                  s+vr+La +p    L    +d  v+  d e+ kv+++++ +
   KKY23904.1 184 STVRGLAVSPRHPYLFSCGEDKMVKCWDLETNKVIRHYHGH 224
                  789*********************************99755 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.007
  ANAPC4_WD40  27 qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtc 86 
                  ++v     +++ s v  L+ +p   +L+ +  dg  r+ d+ +   +h ls ++ + v+ 
   KKY23904.1 215 NKVIRH-YHGHLSGVYTLSLHPTLDVLVTGGRDGVARVWDMRTRSNIHVLSGHRGT-VSD 272
                  555555.4566678999999****************************99988874.655 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.013
  ANAPC4_WD40  28 rvwtl.......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  rvw++         +++ ++v++++ ++ +     +  d++vrl d   gk++  l+ +++
   KKY23904.1 250 RVWDMrtrsnihVLSGHRGTVSDVKCQEADPQVITSSLDSTVRLWDLAAGKTMGVLTHHKK 310
                  4444444444433355677788888888887778888888888888888888888777766 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.043
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  e+s v+ L+ ++d  +L  + ++g++++ d ++g+  +sl++++
   KKY23904.1 349 ENSIVNTLSVNED-DVLFSGADNGSMSFWDWKTGHRFQSLETTA 391
                  5566677776655.68999***************9999988765 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 0.32
  ANAPC4_WD40  43 sLaWkpdgklLavaysdgevrlldaesgkvvh 74 
                  s  + + g  L v+ +d ++++ +  +  + +
   KKY23904.1 404 SSTFDKTGLRLIVGEADKTIKVWKQDENATEE 435
                  55677788889999999999888776665555 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.029   1.3e+02     239     252 ..     162     175 ..     157     188 .. 0.87
   2 ?    4.7   0.0    0.0022        10     231     255 ..     196     220 ..     178     232 .. 0.87
   3 ?    2.4   0.0      0.01        47     231     254 ..     238     261 ..     225     281 .. 0.80
   4 ?    2.6   0.1     0.009        41     233     253 ..     282     302 ..     269     330 .. 0.84
   5 ?   -1.9   0.0      0.22   9.9e+02     228     259 ..     355     390 ..     340     436 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.029
                 T-EEEEEETTTTEE CS
      Nup160 239 dgkLrvWnlltgkc 252
                 d+++++W+l+tg++
  KKY23904.1 162 DRTIKIWDLATGSL 175
                 99*********986 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0022
                 TEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 231 tylfalsrdgkLrvWnlltgkclat 255
                  ylf+   d+ ++ W+l+t+k++++
  KKY23904.1 196 PYLFSCGEDKMVKCWDLETNKVIRH 220
                 6899999**************9986 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.01
                 TEEEEEETT-EEEEEETTTTEEEE CS
      Nup160 231 tylfalsrdgkLrvWnlltgkcla 254
                 ++l++  rdg+ rvW+ +t + + 
  KKY23904.1 238 DVLVTGGRDGVARVWDMRTRSNIH 261
                 56777789***********98765 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.009
                 EEEEETT-EEEEEETTTTEEE CS
      Nup160 233 lfalsrdgkLrvWnlltgkcl 253
                 + + s+d ++r+W+l+ gk++
  KKY23904.1 282 VITSSLDSTVRLWDLAAGKTM 302
                 67889**********998876 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 0.22
                 .....TTTEEEEEETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 228 i....gqtylfalsrdgkLrvWnlltgkclatidll 259
                 +    ++++lf+   +g +  W+ +tg +  + +++
  KKY23904.1 355 TlsvnEDDVLFSGADNGSMSFWDWKTGHRFQSLETT 390
                 344447888888888888888888888888776555 PP

>> W_rich_C  Tryptophan-rich Synechocystis species C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.72   3.2e+03      48      73 ..     235     260 ..     206     275 .. 0.72
   2 ?    9.7   0.1   0.00021      0.95      13      87 ..     325     398 ..     318     411 .. 0.86
   3 ?    0.5   0.0      0.15   6.9e+02      58      71 ..     419     432 ..     413     438 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.72
    W_rich_C  48 ginqvlwkntstnelevWstDsnwnw 73 
                    +vl  + + + + vW++ +  n+
  KKY23904.1 235 PTLDVLVTGGRDGVARVWDMRTRSNI 260
                 55678888888899999998766655 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00021
    W_rich_C  13 vqtedetetalknkgqavsndeyggwqalaaEtvnginqvlwkntstnelevWstDsnwnwissegtialnskta 87 
                 + ++ ++  + k  + +++++ +g+ +++++  vn + +vl+ +++++ ++ W+  +  +++s e+t +++s +a
  KKY23904.1 325 ASSSAGAIKQWKCPEGTFMQNFSGENSIVNTLSVNED-DVLFSGADNGSMSFWDWKTGHRFQSLETTAQPGSLEA 398
                 555666666777788899*************999976.8***************************999999775 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.15
    W_rich_C  58 stnelevWstDsnw 71 
                   + ++vW+ D+n 
  KKY23904.1 419 ADKTIKVWKQDENA 432
                 56789******995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3218.66
//
Query:       KKY23905.1  [L=334]
Description: putative aldo-keto reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-71  239.0   0.0    7.1e-71  238.8   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.8   0.0     4e-75   7.1e-71       2     292 ..      21     307 ..      20     309 .. 0.97

  Alignments for each domain:
  == domain 1  score: 238.8 bits;  conditional E-value: 4e-75
                   EEEE-SSS-ST...TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgsk..eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkr 96 
                   lg+G++ l+     ++s+ee l+ll+ ++ aG  f+D+A+vY  g se+l+G+++k+ ++kr e+++atK     + ++ +  +e i e++++sl+r
    KKY23905.1  21 LGFGMMGLSAFygAVKSDEERLQLLDEVYAAGELFWDSADVY--GDSEDLIGKWFKR-SGKRSEIFLATKF----GGMSINNDPEYIKECCNNSLQR 110
                   899*9999987999****************************..*************.*************....********************** PP

                   HT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT.-HHHHTTHHHHHHHTT-EEEEBSTT CS
  Aldo_ket_red  97 LgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynll.releeegllelckkkgvpliayspl 192
                   Lgtdy+Dl+++Hr++ + p ie ++++++el+k+Gk++++G+S+ s+  l++a   ++  i a+q+ey+++  e+e+  +l++++++gv++iay pl
    KKY23905.1 111 LGTDYIDLYYCHRVNKDQP-IEITIQTMAELKKQGKVKHLGISECSANTLRRA--CAVEHIDAIQMEYSPWaLEIEQLDILQTARELGVAVIAYAPL 204
                   *******************.*******************************99..89999************************************* PP

                   GGGTTGTTTSS---SSSCCC-------..TS-HHHHHHHHHHHHHHHH.TT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHH CS
  Aldo_ket_red 193 ggGlltgkyqseedkedkeprkdlkrd..ertsknldaaeelselake.hgvslaqlalryalsqpavgivipgasnieqlednldalelklseeev 286
                   g+G+ltg+y+s++d+++++ r    r+  e++ knld+a+++  + k+  g+++ ql+l+++++q   +i+ipg++n++  ++n+++l++k++eee 
    KKY23905.1 205 GRGFLTGRYKSPKDFPEGDFRTLAPRFsaENFHKNLDLADRFLTISKKhGGCTPGQLTLAWLMAQGDDIIPIPGTTNLANFKENIGSLNVKITEEEE 301
                   **********************99999*********************4456********************************************* PP

                   HHHHHH CS
  Aldo_ket_red 287 aeldel 292
                   ae++++
    KKY23905.1 302 AEIRKA 307
                   ***987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2045.35
//
Query:       KKY23906.1  [L=489]
Description: putative secreted protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-15   54.5   0.0    1.9e-08   33.1   0.0    2.0  2  Glyco_hydro_106  alpha-L-rhamnosidase


Domain annotation for each model (and alignments):
>> Glyco_hydro_106  alpha-L-rhamnosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0     1e-12   1.9e-08     265     482 ..      24     241 ..       4     257 .. 0.80
   2 !   19.7   0.0   1.2e-08   0.00021     523     739 ..     259     478 ..     250     479 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1e-12
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx...x.....xxxxxxxxx RF
  Glyco_hydro_106 265 EvDKldkeavrkyleayldelkdavgaelgkkglkylltDs..yEaGaqn.WTeelieeFkkrrGYdllpylPvlt...G.....evvgsaees 347
                       vD +++e  +  ++ + ++l+    ++l +++ +y+  Ds  y  G ++ WT +l++ F   rGY++ +y+Pv+t   G      ++++ +e 
       KKY23906.1  24 VVDHFSAEGAQLIIDFWPESLLFDNTPDLIRQVGNYMWEDSqkYKFGVTTyWTPNLPHTFATNRGYSINKYIPVVTdvrGsttssYILDDGDEG 117
                      58999999999999999999999999999999********988999*8766***********************98444332222588999999 PP

                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_106 348 drFLwDlRrtiadliaenhygklaellkkrglkvytEslesgrafladglavkrkadipmgalWteekkekeeleseadireaaSvahiyGknl 441
                        F+ D+ +t+++l ++ +  +l++ +++ g++  +  +    +++ d la   +++ p  ++   e++++         r+ +  a++  k++
       KKY23906.1 118 VGFIEDYQQTLTEL-NQIYLSVLTQWSENLGVQWSAQVVY---NVPLDMLASIPYVNAPECEMLGFEHNIDG-------YRQFSGSANLADKRI 200
                      99*********997.7789999999999988887555444...55999999999999999999998886664.......567777788888999 PP

                      xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_106 442 vaaEslTakgaafaea.PaklkrtaDlelasGlNriviHtsv 482
                      +++E+   + +a++++ P+ l     + ++  +N+++iH + 
       KKY23906.1 201 ISSEAGALTYRAYQQTiPELLWD-LKRSIVGSINQYIIHGYP 241
                      99999888888887762555555.456777889999999875 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 1.2e-08
                      xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_106 523 sylLqqGrnvadvayfygeda..nltklvkekepalPkgyeyDfinaevlldalkvengklvtpsgmsYrvLvLdesskrmslellrkikelvk 614
                        lL  G   +dva++    +  ++t+ +   +  + +gy y++++ +  +   +   +++++p+++ +r +v+ + ++ ++++ ++k+  +++
       KKY23906.1 259 ICLLGDGVPKVDVAFYSKSTSyePVTTQYW-PSDLVVTGYTYEYLSPDNFALPEAFVSDRIFAPNRQGFRAMVVRA-NDSLTVAGVNKLVGYAH 350
                      56899999999***9976654114444442.2335779***********99999999*******************.99*************** PP

                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  Glyco_hydro_106 615 aGatvvGskpkkspsleddkaefsalvkelwgkkkvrkvgkgnvvagasleealsalgiapdfkltksekaeilfvhRrtadaeiYfvaNrsk. 707
                      +G+ ++ s     ++l+ ++a+fs+ +  l ++  v+ + + + v+  +l+++ls+l+i p  +++++ +    ++  ++  ++  fv N  + 
       KKY23906.1 351 DGLPIIFSGGL-PSNLSGHNASFSTSAIGLLNA--VTSLENVHTVSYENLATTLSSLNISPRTAISTNGTWYTYWREDNETLTDYVFVYNDATg 441
                      ***99855433.234667778899999999988..5789999999999*****************99777777777777777888899998751 PP

                      .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
  Glyco_hydro_106 708 .....kaeeveasFrvtgkkpelWdaetgkieev.sye 739
                             ++ ++sF +t  +p ++da tg+++++ sy+
       KKY23906.1 442 vpmgqGMTTGNISFETT-ATPFFYDAWTGDVTSIySYQ 478
                      11111345567788866.47889999999888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 3112.38
//
Query:       KKY23907.1  [L=1127]
Description: putative nuclear pore complex protein an-nup120 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-97  326.9   5.4    3.6e-97  326.3   5.4    1.2  1  Nup160    Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.3   5.4    2e-101   3.6e-97      52     537 .]      25     512 ..       7     512 .. 0.91

  Alignments for each domain:
  == domain 1  score: 326.3 bits;  conditional E-value: 2e-101
                 EEE.EETTEEE..EEE---S...SSS--EEEEEE-SS-SESSSESEEEEESSSEEEEEEEESSS-EEEEEEEHHHHHSTT----S...TSBEEB-SSGT CS
      Nup160  52 WrvltdgktLe..lvelslk...ssllnnnlrldFpssllpscvsftdsesgdvlivivtttsvhlyvlrlssdffrsskailndld.ewckidspssl 144
                 ++   dg++Le   v+l ++   ++++ + lr++Fp +++ps+++f+d e++d++  +v+t+++ ly+  l++dff      l++l+ ++   ++ps++
  KKY23907.1  25 AK--SDGQVLEvrSVDLVKSryeQQEASKILRIRFPTAIIPSGITFADAEGHDYINAFVITENKELYTMVLQRDFFTG----LKELGtDFYTTSTPSYF 117
                 55..7899***9988888888889*****************************************************2....22222044566778888 PP

                 .TTS-EEEEEE-SSSEEEEEETTS-EEEEEE..ETTEEEEEEEEE-------B--TTTT.TSS--SS---TT-ECEEEEET.....TTTEEEEEETT-E CS
      Nup160 145 stsskpgrlaavssnellvsladggllklkr..dedggawkesvfepksfllslsgllglladpsrrksgasvalsldvavavveigqtylfalsrdgk 241
                  t ++p r +a s+ el++s+ +g+l +l+r  ++dg++w +  f++k +  sl+g ++++++ s++++g+  ++s+++++   + ++t++f+++++++
  KKY23907.1 118 -TLQRPFRIHANSPYELFISYENGTLQRLTRkaGDDGSSWVQHNFDEKAW--SLRGIVHWQGKQSVKYNGRALDQSTALTITALS-DSTHAFTVCLNHT 212
                 .********************************99***************..********************7777776666666.************* PP

                 EEEEETTTTEEEEEEE--.-SSSTTS--SSEESEEESSSSEEEE............E--GGG-EEEEEEEEEEE-...SSSEEEEES-S------S-TT CS
      Nup160 242 LrvWnlltgkclatidllrdeeaqdessskstldpaesslirvs..dggqsylvvtyspssggefkvwkvkkedtsvslglvdlfleqtivpadpdssn 338
                 LrvWnl+tg ++ t+dll d++ + ++    +l+p+ ++ +r++     ++ +vvt+sp ++g fk+w+vk ++t ++l+l d+f+++ ++++dpd s+
  KKY23907.1 213 LRVWNLTTGHLVLTKDLL-DATRTPQELPSVSLNPSAYTCLRLAklGFSGQTYVVTFSPHNEGYFKFWTVKNSLT-SQLELNDAFPAASLRAPDPDPSG 309
                 ******************.777777777777*************77456789***********************.77*************66666666 PP

                 ..--EEEEEEEEE-T..TEEEEEEEEEETTEEEEEEEEEE-SS-SS-.EEEEEE--------TTTTTS--SSGGG-SSHHHHHHHHH--.-HHHHHHHH CS
      Nup160 339 ..vweLrDfaltsse..kgfelwalwknnegsvlkvlkinfesdeadtdddWssvsaseritdketlgdeedveeatkeyldrilepGrFsnavletAL 433
                   vw++  f + ++e    +elw+lw+nn   +l+  k+n+ + e+++ +dW  +++   +t+++   + ++v+++ +++l+++l pG +s   letAL
  KKY23907.1 310 nsVWSMTGFEVLPTEsnHVIELWVLWRNNNVRQLVSIKLNLLDVERSWNNDWIQTAVYDGPTKHSLELTQDEVLDPSTRWLQYLLRPGNYSTFLLETAL 408
                 67**************9999********************************999787777777777777788888888******************** PP

                 HHHTTSS--STHHHTS-HHHHHHHHHHHHHTTS.-B-SSSSSB-HHHHHHHHHHHHHHHHHHHHHTSSSSG-EEEEEEBTTTTBEEEEETTEEEEEE-- CS
      Nup160 434 sifrrnlsssssvkslssaelkeevcsavesei.lndvseggadyeeyreaskreWerFyrlceeldkaaseplsLsldpqadvpwlirrdslslirpc 531
                  i++ ++++++ + +++ ++l  +++ av+s++ l+++++ ++dy+++ + ++r+W++++r++e l+++ ++p+sL++dp+++  w++ +ds+++ir+c
  KKY23907.1 409 TIYQ-DIMKFKIPSTEKRTSLFHRITYAVTSTVnLRKYAGSDIDYDRFDAELDRQWQNLWRIAENLRERQGAPVSLAVDPYTNLAWVVMADSCATIREC 506
                 ****.88899888888999******************************************************************************** PP

                 -HHHHH CS
      Nup160 532 selEvi 537
                  ++E++
  KKY23907.1 507 NNIEIL 512
                 ***985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.33s 00:00:01.10 Elapsed: 00:00:00.48
# Mc/sec: 7067.45
//
Query:       KKY23908.1  [L=287]
Description: putative aldo-keto [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-39  135.0   0.0    9.3e-32  110.4   0.0    2.0  2  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.0   5.2e-36   9.3e-32      18     194 ..      33     206 ..      28     214 .. 0.95
   2 !   23.2   0.0   1.9e-09   3.4e-05     230     293 ..     213     274 ..     205     275 .. 0.92

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 5.2e-36
                   HHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH........-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEE CS
  Aldo_ket_red  18 eealellrraleaGinffDtAevYgkgqseellGealkk........srkkreeviiatKvdlrdaeiksglskeniresleeslkrLgtdyvDlll 106
                   +e  ++++ aleaG++ fD+A++Y   ++e  +G+a+k+        ++  re+++ ++K+        s+ + e  r+s+++s++r g+ y+Dl+l
    KKY23908.1  33 KETENAVKWALEAGYRGFDSAQMY---HNEAQVGRAIKSflagasnkDSLTREDLFYTSKL-------ASNATYEVARQSIKQSVERAGLGYIDLFL 119
                   577889******************...**************999888888899*******9.......9**************************** PP

                   E-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH.HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGG CS
  Aldo_ket_red 107 lHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka.kkkkkvkivavqveynllreleeegllelckkkgvpliaysplgg 194
                   lH p     +++e ++ale+ +  G +r+ GvSnf v++le++  +   +k++++qve +++     e++ ++c+k+g+ + ay pl +
    KKY23908.1 120 LHSPYGGKTKRLESWRALEDAILDGEVRSGGVSNFGVQHLEELlASNPRIKPAVNQVEVHPF--NTRENITSFCQKNGIIVEAYAPLVR 206
                   *****99999*********************************9999***************..999*******************975 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 1.9e-09
                   HHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHHH CS
  Aldo_ket_red 230 eelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeldell 293
                   +++ +l k++++++aql +r+ l  + + +++p++ + +++ +n+++  +++ + +++ ld l+
    KKY23908.1 213 PTVTSLSKKYSCTPAQLLVRWSL--QHGFVPLPKSVTKSRIIENAQVGGFQIEDADIKVLDGLD 274
                   678899*****************..8999*****************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.52
# Mc/sec: 1658.17
//
Query:       KKY23909.1  [L=106]
Description: putative serum paraoxonase arylesterase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       169  (0.00942607); expected 358.6 (0.02)
Passed bias filter:                      169  (0.00942607); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 741.60
//
Query:       KKY23910.1  [L=455]
Description: putative glutamate leucine phenylalanine valine [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-87  291.7   3.8    6.2e-87  291.3   3.8    1.1  1  ELFV_dehydrog    Glutamate/Leucine/Phenylalanine/Valine dehyd
    7.4e-53  177.9   0.0      3e-52  175.9   0.0    2.0  2  ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation 
  ------ inclusion threshold ------
      0.063   13.7   0.1       0.15   12.5   0.1    1.7  1  NAD_binding_7    Putative NAD(P)-binding
       0.14   12.0   0.4       0.35   10.8   0.4    1.7  1  LRR_3            Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.3   3.8   1.4e-90   6.2e-87       1     243 []     188     452 ..     188     452 .. 0.96

  Alignments for each domain:
  == domain 1  score: 291.3 bits;  conditional E-value: 1.4e-90
                    T--TTTTTHHHHHHHHHHHHHHHHTTTS..-STTEEEEEE--SHHHHHHHHHHHHCT-EEEEEEESSEEEEETTEE...-HHHHHHHHHCSSSSTT CS
  ELFV_dehydrog   1 GGsldrpeaTglGvvyyveemlkklkld..slegkrvaisGsGnvgsyaallltelgakvvavsDssGviydpeGl...dieellelkeerksvke 91 
                    GGsl+rpeaTg+G+vyyv++m++++++   s++gk+v+isGsGnv++yaal+++elg +vv++sDs+G ++  +G+   ++ ++++lk erk++++
     KKY23910.1 188 GGSLIRPEATGYGLVYYVQHMIETASGGkeSFKGKKVVISGSGNVAQYAALKVIELGGTVVSLSDSKGSLIALDGVtpeEVMTIAQLKVERKALSD 283
                    9***********************988788**********************************************77777778888999999*** PP

                    HSHH..STSTSEEESHHSHHHHS..S-SEEEE-SSTTSB-HHHHTHTHHTT-SEEE-SSSS-B-HHHHHHHHHTT.......-EEE-HHHHTTHHH CS
  ELFV_dehydrog  92 ykks..sekkaeyieneeellel..kvdilvPcAtqneideenakalikngvklvvEgANlpttqeAkeileeag.......vlvvpdkaaNaGGV 176
                    ++++   ++k++y+e++ +++    kvdi++PcAtqne+++e+ak li++gvk+++Eg+N+++tqeA++++e+++       ++++p+kaaNaGGV
     KKY23910.1 284 LATTegFKSKYKYLEGA-RPWLQvgKVDIALPCATQNEVSGEEAKGLIEAGVKFIAEGSNMGSTQEAIDVFEAHRkekkgdsIWYAPGKAANAGGV 378
                    998888667899****7.9996579*********************************************************************** PP

                    HHHHHHHHHHHCT----HHHHHHHHHHHHHHHHHHHHHHHHHCT-T.......HHHHHHHHHHHHHHHHHHHCT CS
  ELFV_dehydrog 177 tvSslEmlqnlarlswteeevdeklkkimkeifkavveeaeeykqe.......lvkganiagfekvaeamkaqG 243
                    +vS+lEm+qn++rlswt+eevd+klk imk++f++++++a+ey ++       lv+ganiagf kvaeamkaqG
     KKY23910.1 379 AVSGLEMAQNSQRLSWTSEEVDSKLKGIMKNCFDNCLATAKEYITPaegefpsLVAGANIAGFVKVAEAMKAQG 452
                    *******************************************99999*************************9 PP

>> ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.9   0.0   6.7e-56     3e-52       1     130 []      43     171 ..      43     171 .. 0.99
   2 ?   -1.5   0.0      0.49   2.2e+03      36      66 ..     254     284 ..     249     289 .. 0.82

  Alignments for each domain:
  == domain 1  score: 175.9 bits;  conditional E-value: 6.7e-56
                      -SEEEEEEEEEE-TTSBEEEEEEEEEEEE-TTSSEEEEEEEETT--HHHHHHHHHHHHHHHHHTTSS-EEEEEEEES-GGGS-HHHHHHHHHHH CS
  ELFV_dehydrog_N   1 pervlqvtvpvkrdnGelevikgyraqhssalgPakGGiRfhpsvnldevkaLaalmtyKnalvdlpfGGakggvkidpkklseeeleritrrf 94 
                      perv+q++v++++d+Gel++++gyr+q++salgP+kGG+Rfhpsvnl+ +k+L+ ++++Knal++l++GG+kgg ++dpk++s++e+++++ +f
       KKY23910.1  43 PERVIQFRVTWEDDKGELHINTGYRVQFNSALGPYKGGLRFHPSVNLSILKFLGYEQIFKNALTGLNMGGGKGGADFDPKGKSDNEIRKFCVAF 136
                      89******************************************************************************************** PP

                      HHHHG.GG-BTTTEEEEBBTTB-HHHHHHHHHHHHH CS
  ELFV_dehydrog_N  95 vrelakkfiGpgiDvpApDvgtgaremawladeykk 130
                      ++el+ k+iG ++D+pA D+g+++re++w++++ykk
       KKY23910.1 137 MTELS-KHIGADTDIPAGDIGVSPREIGWMFGQYKK 171
                      *****.****************************85 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.49
                      EEEEEEETT--HHHHHHHHHHHHHHHHHTTS CS
  ELFV_dehydrog_N  36 kGGiRfhpsvnldevkaLaalmtyKnalvdl 66 
                      kG +   + v+ +ev+ +a l + + al dl
       KKY23910.1 254 KGSLIALDGVTPEEVMTIAQLKVERKALSDL 284
                      6777777889999999999999999999887 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   3.4e-05      0.15       5      74 ..     219     321 ..     218     338 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.4e-05
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtvvapevkeele............elvklaeeelekd......................legadlvi 66 
                    +kgkkv++ G G+vA+  + k++e g +v+ ++    + +              ++k++++ l+ d                      + ++d+++
     KKY23910.1 219 FKGKKVVISGSGNVAQYAALKVIELGGTVVSLSDSKGSLIAldgvtpeevmtiAQLKVERKALS-DlattegfkskykylegarpwlqVGKVDIAL 313
                    79***********************999998887752222244444553443422222222221.1223333333344444445555555566666 PP

  NAD_binding_7  67 aatddrel 74 
                     + +++e+
     KKY23910.1 314 PCATQNEV 321
                    55555555 PP

>> LRR_3  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4   7.8e-05      0.35      11      19 ..     171     179 ..     168     179 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.8e-05
       LRR_3  11 kLeKLWEGv 19 
                 kL+KLWEGv
  KKY23910.1 171 KLTKLWEGV 179
                 9*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3408.87
//
Query:       KKY23911.1  [L=835]
Description: putative rna polymerase ii mediator complex subunit nut1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-73  247.7   0.1    5.4e-73  246.4   0.1    1.5  1  Med5       Mediator complex subunit Med5
  ------ inclusion threshold ------
      0.041   13.6   0.0       0.12   12.0   0.0    1.8  2  MmcB-like  DNA repair protein MmcB-like
       0.13   12.5   0.4       0.45   10.7   0.4    1.9  1  SRTM1      Serine-rich and transmembrane domain-containing pr


Domain annotation for each model (and alignments):
>> Med5  Mediator complex subunit Med5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.4   0.1   9.1e-77   5.4e-73     512     966 ..     255     642 ..     228     662 .. 0.86

  Alignments for each domain:
  == domain 1  score: 246.4 bits;  conditional E-value: 9.1e-77
        Med5 512 isnaildlleelieeketeklkkicalltfnvshsltviLsfvsPekileklikfiDvswessveskeedsddddfesqnvylsfglillliiaivkty 610
                 i+ a++d+++ l+ ++et++lk+ic+ + ++ ++ l+vi +f +P + l++l++ +D  w+         +d+d++esq+vy++fg+illli++ +++y
  KKY23911.1 255 IAGAVVDVIQRLCRDNETMTLKRICLHI-VRKPRRLDVIALFHNPSSYLQPLCNVLD-GWK---------WDEDQGESQPVYDEFGSILLLILTASYRY 342
                 899*************************.999*************************.***.........***************************** PP

        Med5 611 disledvalksseldiknsfiiklisklseIpdafvldesneeddelqeksnkllqsWlrdLFvngslSdeliksvdvkqlakLiPfifkQvllavelg 709
                 ++ ++d++++       +sf+++l+ + s+          ++++d+l+   +++l+sW+++LF++++lSdel++s++++++++L+P++f+Q+l a+++g
  KKY23911.1 343 GLIPSDLGITDA-----DSFVLRLLGNSSQ----------EHTLDQLDDTTKQHLGSWISALFIAEGLSDELTSSCSPQDFYLLVPTLFSQSLDACSAG 426
                 ***********9.....********99888..........5678899999************************************************* PP

        Med5 710 visdisnlvgGfeYllqpfLlvglikivtWLeqyLselkndktaeellekilklLnsllnpsslnedskafhsavLrlnavsLlkvlrkfrvresqsnY 808
                 ++  i+ l +GfeYll+ fLl++l+ ++ WL +++++ ++ + ++      l+lL++l++p++ + +++++h++++ ++a ++ ++l++ +v++ +s  
  KKY23911.1 427 KL-TIDALRSGFEYLLEGFLLPSLLVALLWLSNHIRSEETSPKSS------LQLLHALIKPTTGSFEAREIHQTIVSIAADPVRQALQSSKVKS-SS-- 515
                 **.9*******************************9988887777......88**************************************943.33.. PP

        Med5 809 giYssesqgdpkleslIskLvsvlnispiydvdsrvisseenaysqkelsyekllitnenplnkiltnqinsf..WnlhsstyYnldyLkeliklvtpk 905
                           p  +s       ++++ + y+  +r  s      s+ el  + +       l + + + ++ +  W ++++t+    + ++l      +
  KKY23911.1 516 ----------PDAQS-------IMKLLNSYNDFKRAPSV-----SRTEL--D-VWCSTPGALSQTINHAFQVLvyWDTNQMTTTPPGFTFKLFT---VS 586
                 ..........33332.......33333444444444444.....55788..4.4566778999999999999999******6666666554433...33 PP

        Med5 906 kfLedvlrtLkykvtsygvpgsrnkqsneesehvldylfyflvlsdvesqeeasellelle 966
                   L+ v+r L++ ++s      + ++++++ +++ld+lf ++ +++  s+++++++  l +
  KKY23911.1 587 IRLHGVIRALQFFLESL-----KMQHESGNFDFALDVLFAIISAPSSASSHQQQQVTTLTS 642
                 33667777777777774.....6666779********************999998887766 PP

>> MmcB-like  DNA repair protein MmcB-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.1e-05      0.12      16     121 ..     258     371 ..     247     387 .. 0.84
   2 ?   -3.8   0.0       1.5   8.8e+03     127     142 ..     638     653 ..     627     656 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.1e-05
   MmcB-like  16 airrgvlrllrelglaalpelsL...asGrraDlvalskkgeiwiieikssveDfrtDrkWpe....yrahcDrlffaveedvpleilPedvGlivaDa 107
                 a+   ++rl+r  ++ +l+ + L      rr D++al ++ +  +  +   ++ ++ D+   e    y ++   l++ +++  +  ++P+d G+  aD+
  KKY23911.1 258 AVVDVIQRLCRDNETMTLKRICLhivRKPRRLDVIALFHNPSSYLQPLCNVLDGWKWDEDQGEsqpvYDEFGSILLLILTASYRYGLIPSDLGITDADS 356
                 5667789*************9995545789*******************99**9*9998654433339999999************************* PP

   MmcB-like 108 ygaellrea.pehkl 121
                 ++ +ll ++  eh l
  KKY23911.1 357 FVLRLLGNSsQEHTL 371
                 ***988665157776 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.5
   MmcB-like 127 kalllrfaraaasrla 142
                  +l+ rfa + a rl 
  KKY23911.1 638 TTLTSRFALQDAVRLE 653
                 4789999999999997 PP

>> SRTM1  Serine-rich and transmembrane domain-containing protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4   7.5e-05      0.45       9      76 ..     401     469 ..     394     473 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.5e-05
       SRTM1   9 ssvenGtfleliptslstsvdassgrlsnvyvyvsiflsll.aflllllvialqrlkniisssssypec 76 
                 ss+    f  l+pt  s s da s+   ++    s f  ll  fll  l++al  l n i s  + p+ 
  KKY23911.1 401 SSCSPQDFYLLVPTLFSQSLDACSAGKLTIDALRSGFEYLLeGFLLPSLLVALLWLSNHIRSEETSPKS 469
                 5666677999************996666777788888777736******************99988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (835 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.49
# Mc/sec: 5168.74
//
Query:       KKY23912.1  [L=1175]
Description: putative ras guanine-nucleotide exchange protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-52  176.4   0.9    1.2e-51  175.5   0.9    1.5  1  RasGEF    RasGEF domain
      6e-12   45.7   0.0    2.7e-11   43.6   0.0    2.2  1  RasGEF_N  RasGEF N-terminal motif
    7.7e-07   28.9   0.0    1.5e-06   27.9   0.0    1.6  1  SH3_9     Variant SH3 domain
    1.5e-05   24.5   0.0    3.2e-05   23.5   0.0    1.6  1  SH3_1     SH3 domain
     0.0025   17.4   0.0     0.0055   16.4   0.0    1.5  1  SH3_2     Variant SH3 domain
  ------ inclusion threshold ------
       0.06   13.6   0.5        1.2    9.3   0.1    2.7  2  I_LWEQ    I/LWEQ domain


Domain annotation for each model (and alignments):
>> RasGEF  RasGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.5   0.9   3.9e-55   1.2e-51       1     176 [.     902    1085 ..     902    1086 .. 0.96

  Alignments for each domain:
  == domain 1  score: 175.5 bits;  conditional E-value: 3.9e-55
      RasGEF    1 elAeqltlieaelfskikpeellgsawskedrs..pnveaviarfnrlsnwvaseilseeslkkRakviekfikiakecrklnNfnslmailsaLqs 95  
                  e+A+qlt+ e+++f++i peell + w+k++ s   nv+a+ + ++ l+ +va +il+++++kkRa +i+++ikia++c +lnNf+slmai++aL++
  KKY23912.1  902 EFARQLTIKESQIFCSILPEELLATEWTKQRGSlaVNVRAMSTLSTDLASLVADTILQQDDAKKRAAIIKQWIKIANKCLELNNFDSLMAIYCALTN 998 
                  79***************************99556799************************************************************ PP

      RasGEF   96 spvsrLkktweavskkslktleeleelmspennfknyrealkssasskpciPflglyltdltfieegnpdtl........egk.iNfeKr 176 
                  s + r+k+twe vs+k++ +l++l ++++ ++n+ ++r++l++     pc+Pf+g+yltdltf++ gnp t           + iNf+K+
  KKY23912.1  999 STITRMKRTWELVSQKNRSLLDSLGSVVDVSKNHTSLRNRLQNL--MPPCLPFVGMYLTDLTFVDHGNPATRqlsatdgtL-QvINFDKH 1085
                  ********************************************..8999*******************9999****9945.45****97 PP

>> RasGEF_N  RasGEF N-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0     9e-15   2.7e-11       2     102 ..     723     812 ..     722     817 .. 0.80

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 9e-15
    RasGEF_N   2 vkagtlekLierLtsk.rlldddfletFLltyrsFttpaeLlekLierye.inppnnlesdesnswnsksssnirlrvlsvlkewvenhyydfsddkal 98 
                 v +g+l++Lie+Lt+  +  d++f+++F lt+r F tp e+ + L++r+e +  ++            +++ ++rlrv + lk w+e h+ +   d a 
  KKY23912.1 723 VVGGSLRALIEKLTAYdSTPDPEFVSAFYLTFRLFATPLEFAQSLADRFEsVGVTP------------NTAGPVRLRVYNSLKGWLEGHWRHDC-DNAA 808
                 779*************666688***************************5222222............34456*****************9433.3345 PP

    RasGEF_N  99 lskl 102
                 + ++
  KKY23912.1 809 MPFI 812
                 5555 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   5.2e-10   1.5e-06      12      47 ..      91     128 ..      75     130 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 5.2e-10
       SH3_9  12 eLsLqrGDvitvieesedgWlegsl..tGrtGlvPany 47 
                  L+L++GDvi+v + + +gW +g+l  tG +G++P ny
  KKY23912.1  91 TLPLNQGDVILVHSVHTNGWADGTLleTGDRGWLPTNY 128
                 69***********999********669*********** PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.1e-08   3.2e-05      13      48 .]      91     126 ..      74     126 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.1e-08
                 BXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1  13 ELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                  L++++GDvi v++ + +gW +g l  tg +G+ P+
  KKY23912.1  91 TLPLNQGDVILVHSVHTNGWADGTLLETGDRGWLPT 126
                 599*******************************95 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.8e-06    0.0055      15      56 ..      91     131 ..      73     132 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.8e-06
                 B--B-TTEEEEEE..EEEECTTEEEEEE..CCCEEEEEGCGEEE CS
       SH3_2  15 eLsfkkGdvikvlslgskdsdgwwegev..gGrvGlfPsslvee 56 
                  L + +Gdvi v    s   +gw  g+    G +G+ P++++e+
  KKY23912.1  91 TLPLNQGDVILVH---SVHTNGWADGTLleTGDRGWLPTNYCEP 131
                 499*********9...99999*****99999**********997 PP

>> I_LWEQ  I/LWEQ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.14   4.2e+02      69     103 ..     193     227 ..     180     262 .. 0.80
   2 ?    9.3   0.1   0.00041       1.2      36      95 ..     406     465 ..     391     473 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.14
      I_LWEQ  69 kslkrLeaaskaVkkatkelvkavkeakekqeeee 103
                 +++++L+++ ka+ +  ++lvk +k+ ++ ++++ 
  KKY23912.1 193 RTHDNLRRVRKAILSDLSSLVKIAKRLQDIAKNDA 227
                 68899999*****************9998877754 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00041
      I_LWEQ  36 kakeeeLivaakevaastaqLvvasrvKadknskslkrLeaaskaVkkatkelvkavkea 95 
                   ++ +L+v+ +   +s+ qL++  ++ ++++++ ++ L++a ++  + + +l +a+++a
  KKY23912.1 406 SRSSTDLLVTTQRAVKSCRQLMTLIEAVMKRDGRRNEVLRKAKENMVDKITDLARAAQDA 465
                 467788999999999******************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.47
# Mc/sec: 7563.95
//
Query:       KKY23913.1  [L=2233]
Description: putative cytokinesis protein seph [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-65  219.7   0.0    9.1e-65  218.6   0.0    1.6  1  Pkinase         Protein kinase domain
    1.3e-43  149.2   0.0    2.1e-43  148.5   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase
    1.4e-14   54.0   0.0    2.9e-14   53.0   0.0    1.5  1  HATPase_c_3     Histidine kinase-, DNA gyrase B-, and HSP90-l
    3.9e-07   30.0   0.0    5.9e-06   26.1   0.0    2.7  2  MutL_C          MutL C terminal dimerisation domain
      9e-06   26.2   0.0    2.7e-05   24.6   0.0    1.8  1  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l
     0.0062   15.4   0.2      0.014   14.2   0.0    1.6  2  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.012   15.3   0.8       0.05   13.3   1.2    1.8  2  DUF383          Domain of unknown function (DUF383)
       0.12   11.6   0.0       0.88    8.8   0.0    2.1  2  Kinase-like     Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.6   0.0     4e-68   9.1e-65       1     264 []      52     296 ..      52     296 .. 0.96

  Alignments for each domain:
  == domain 1  score: 218.6 bits;  conditional E-value: 4e-68
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                 y+    lG+G+fG+Vy+a++  tg++vAvK+ik  +  k++ + ++ Ei +lk+l+hpniv++ ++++++++      y+e+g+l+++ ++ g ++e+ 
  KKY23913.1  52 YQLGDCLGKGAFGSVYRALNWGTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDHPNIVKYHGFVKTPET------YCENGSLHSISKNFGRFPENL 144
                 566778***********************************9**************************9975......79**********9999***** PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STT CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfs 198
                 +  +++q+l+gl ylH++g+iHrD+K +NiL  ++g +K++DFG+a++ +  +  +s+vgt++++APEv++ ++ ++++D+WslG++++ell gkpp++
  KKY23913.1 145 VGLYMSQVLHGLLYLHEQGVIHRDIKGANILTTKQGLVKLADFGVASRTTGLH-ESSVVGTPYWMAPEVIELSGATTASDIWSLGCTVIELLDGKPPYH 242
                 *************************************************9988.9******************************************** PP

                 TSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 199 gekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                           +l+ + ++++i++  + + p +s  s+ ++d+l ++++kdp+ R++a++ll+hp++
  KKY23913.1 243 ----------KLQPMPALFRIVN--DDHPPLPSGASPAVIDFLMQCFQKDPNLRVSARKLLKHPWI 296
                 ..........6777788888884..58999999********************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.5   0.0   9.6e-47   2.1e-43       3     257 ..      54     292 ..      52     293 .. 0.92

  Alignments for each domain:
  == domain 1  score: 148.5 bits;  conditional E-value: 9.6e-47
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEES.TTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlk.eeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekek 99 
                  lg+ lG+GafG+V+++        + ++VavK++k ++  ++e + ++ e++++k+l+hpnivk++g++   e+      y+++G+L++  ++    +
   KKY23913.1  54 LGDCLGKGAFGSVYRALNW----GTGETVAVKQIKlADLPKSELRVIMLEIDLLKNLDHPNIVKYHGFVKTPET------YCENGSLHSISKN--FGR 139
                  7789************988....7999*******846778888999999********************97665......*******997555..699 PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwE 197
                  +  + +  ++ qv +G+ yL+++ ++Hrd+   N+L +++ +vk++DfG+a+++    +  ++++      WmapE+++ +  t++sD+Ws G +++E
   KKY23913.1 140 FPENLVGLYMSQVLHGLLYLHEQGVIHRDIKGANILTTKQGLVKLADFGVASRT----TGLHESSVVGTPYWMAPEVIELSGATTASDIWSLGCTVIE 233
                  99999999*******************************************999....5566666777889*************************** PP

                  HHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 198 iftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  ++  g+ py++l+++ +l ++ ++ + + p+ +++++ +++++c+++dp+ R + ++l++
   KKY23913.1 234 LLD-GKPPYHKLQPMPALFRIVNDDHPPLPSGASPAVIDFLMQCFQKDPNLRVSARKLLK 292
                  **9.*************************************************9998865 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   1.3e-17   2.9e-14       2      96 ..    1327    1418 ..    1325    1446 .. 0.80

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 1.3e-17
  HATPase_c_3    2 slekAlaelvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelknalrlatsskeak..rkstslGkkGiGlklAslslgkkltvitkke 95  
                   +l+++++el++Nsld+ a+n+k+++++ +   g + ++D+G+G++ +e+ +   l+++ +++k   ++t +G +G +  lAsls ++ l++ +++ 
   KKY23913.1 1327 TLNDVIVELLKNSLDSGATNIKVKIDRSK---GGCEVQDNGSGIPSAEFAESGGLGNPFHTSKygAGATFHGFRGHF--LASLSALSLLSIASRHT 1417
                   3599***********************86...7******************6666666555542258999****988..**************876 PP

  HATPase_c_3   96 g 96  
                    
   KKY23913.1 1418 H 1418
                   3 PP

>> MutL_C  MutL C terminal dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.6e-09   5.9e-06       5      79 ..    1907    1995 ..    1905    2011 .. 0.76
   2 ?   -0.1   0.0      0.31   6.9e+02     127     147 .]    2105    2125 ..    2095    2125 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 2.6e-09
                  EEEEETTTEEEEEE.............TTEEEEEEHHHHHHHHHHHHHHHHCCHSS.B-EEEEEEEEEEE--HHHHHHHHHCHHHHHHC CS
      MutL_C    5 algqvhgtyilaen.............edglvlvDqhaAherilyeklkeqlkeee.lksQpLliPlvlelspeeaalleehkeeLakl 79  
                  ++gqv++++il+                + lvlvDqhaA+er+  e+l e+l+  +  ++     P+ +e+s+eea+l+e +k+ + + 
  KKY23913.1 1907 VIGQVDDKFILINLagdntsassaskaGRMLVLVDQHAADERCRIERLLEELCDLSkSEPMGIEKPMGFEISQEEARLCEHYKSFFLSW 1995
                  566666666666655555555555544677*********************88743145555667****************99887665 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.31
                  CHHHHHHHHCTTSSSSSS--- CS
      MutL_C  127 kleellatmachssvkagrrl 147 
                   l ++l ++ac+ss++ +++l
  KKY23913.1 2105 PLLDILNSRACRSSIMFNDKL 2125
                  566899**********99876 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.2e-08   2.7e-05       5      76 ..    1327    1396 ..    1324    1437 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.2e-08
                  HHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCS...TTCHHCSTCHTSTSSSH CS
   HATPase_c    5 rLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfe...kfsqddstkrggggtGl 76  
                   L  +i +l++N+++  + a++i+v+i+    +   +v+DnG Gip ++  ++++   +f + +++  g   +G+
  KKY23913.1 1327 TLNDVIVELLKNSLD--SGATNIKVKID--RSKGGCEVQDNGSGIPSAEFAESGGlgnPFHT-SKYGAGATFHGF 1396
                  67889**********..589********..448*****************977766669999.444444444443 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.2e-06     0.014     314     388 ..     151     215 ..     141     227 .. 0.83
   2 ?   -4.1   0.2       2.2   4.9e+03     214     269 ..     469     496 ..     427     566 .. 0.49

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.2e-06
  Pkinase_fungal 314 DaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkg 388
                     +++ g+  L+ ++g++HrDi   Nil t     ++    L+D+ +a+ +   +++s     +GT+++ma ev++ 
      KKY23913.1 151 QVLHGLLYLH-EQGVIHRDIKGANILTT-----KQGLVKLADFGVASRTTGLHESS----VVGTPYWMAPEVIEL 215
                     5778888999.9**************99.....667888*********99755544....69*******999874 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 2.2
  Pkinase_fungal 214 kdddiaeiRkgldvtkaekfrskrkvvsssssqelsskaevklkksesskkvekrs 269
                     + d+ ++ Rk+ + +                             k++ss +   + 
      KKY23913.1 469 QPDEAKHTRKRSEPKP----------------------------KRKSSLPSARNA 496
                     1111111111111111............................111222222122 PP

>> DUF383  Domain of unknown function (DUF383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.2   2.2e-05      0.05      81     188 ..     890    1004 ..     886    1005 .. 0.86
   2 ?   -3.6   0.0       3.4   7.6e+03       1      28 [.    1013    1040 ..    1013    1047 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.2e-05
      DUF383   81 nlsqlpegRelllepqesd.......kelplqkllpftehksiirRgGvastiKNccFekeahklLlseeevdllpylllpLagpeeldeedqekLp 170 
                  +l++ +    +++ +q+++       + ++l +++  +++ s   +  +++ iKN+ + ++  ++L +++ +d+l++ll   + + +++e  ++ L+
  KKY23913.1  890 ELCEARIANIFFIFSQAENyvkelvaERTVLHRVFRDLKKMSPLNQITILKFIKNLSMLTSTLDVLHNSNAIDVLTELLGSSMNKPHFRELSNQILN 986 
                  5555555555666555444556666666899*******999***************************999************************** PP

      DUF383  171 eelqllpedKeRepdsdi 188 
                    + l   +K+R++d+++
  KKY23913.1  987 TIYNLCRLSKRRQEDAAL 1004
                  **************9875 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.4
      DUF383    1 kildskslladlacmLLsNltkeesiaa 28  
                  ki++++ +l++ a  +L+ ++++++ a+
  KKY23913.1 1013 KIVQQERPLKEFALPILCDMAHSSKAAR 1040
                  699999***************9998776 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.25   5.7e+02      10      49 ..      48      87 ..      43     105 .. 0.84
   2 ?    8.8   0.0   0.00039      0.88     159     239 ..     158     230 ..     144     246 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.25
  Kinase-like 10 rertlvrgellkkgdrsvvfevkdqetgeplavkvfllps 49
                  ++++  g+ l+kg ++ v+++ +  tge +avk+  l +
   KKY23913.1 48 LNKNYQLGDCLGKGAFGSVYRALNWGTGETVAVKQIKLAD 87
                 4566678999************************987765 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00039
  Kinase-like 159 nLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekg.faPpEllgsrggytrknktkmthkldaWqlGlv 239
                  +L+++g++h +++  n+l  ++g ++l +f+   r       s v    +  pE++   g          t + d W lG +
   KKY23913.1 158 YLHEQGVIHRDIKGANILTTKQGLVKLADFGVASRTTGLHESSVVGTPyWMAPEVIELSGA---------TTASDIWSLGCT 230
                  8*****************************9777665554434444331345566555333.........555566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.94u 0.29s 00:00:01.23 Elapsed: 00:00:00.48
# Mc/sec: 13863.85
//
Query:       KKY23914.1  [L=421]
Description: putative dihydrofolate synthetase fol3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0032   17.5   0.0      0.012   15.6   0.0    1.8  1  Mur_ligase_M  Mur ligase middle domain
  ------ inclusion threshold ------
      0.031   14.5   0.0      0.072   13.4   0.0    1.6  1  Mur_ligase_C  Mur ligase family, glutamate ligase domain


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.3e-06     0.012       1     129 [.      24     189 ..      24     205 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.3e-06
                   EESSS-HHHHHHHHHHHHHCTEEEEETTC..........................................SS-THHHHHHHHHHHHHTT-SEEEEE CS
  Mur_ligase_M   1 vTGtnGKTTtteliaailekagkvigtvg..........................................ttnneiglpktlaemekkeaeyavlE 55 
                   v+GtnGK ++  ++ a++++ag   +                                              ++    +   l ++ +  ++y v+E
    KKY23914.1  24 VAGTNGKGSICAYLSAMIKEAGFRPARFNsphlidrwdcisindfaverkdfekteqsikirdqelhinasEFELLAATAFELFNASQPPIDYGVIE 120
                   89*******************44333333366899999*****************************98865555556667778888889******* PP

                   --HCHHHCTTTCCHCBESEEEE---TSTTHHHH.SSHHHHHHHHHHHHHTSETTCEEEEETTSC...CHHHHHCT CS
  Mur_ligase_M  56 vsshglgekrlegllkpdvavitnispdHldfh.gtlenyaeaKaelferlkeegiavinaddpyakelikklkk 129
                   v+  g  +   + l + +v +i  i+ dH   +  t+ ++a++Ka +++   +    +i   ++  +e+ ++l++
    KKY23914.1 121 VGLGGRLD-ATNVLSNIEVSIIAKIGLDHQVQLgNTILEIAREKAGIMRPKVP---CIIDGTNE--REVLEALQD 189
                   ***95555.22223689************77665899********99975443...34444444..455555555 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     8e-06     0.072       1      37 [.     264     304 ..     264     337 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8e-06
                   CTTSSEEEEE....TTTEEEEEET--SHHHHHHHHHHHHHH CS
  Mur_ligase_C   1 vkgRlevvge....adgvtvidDyahnpdslsaalkalrei 37 
                   ++gR++++g     +++ tv+ D ahn  s++a+ + +  +
    KKY23914.1 264 WPGRMQRLGLeqltGRQETVLLDGAHNLQSAEALAAHVDRT 304
                   79******99888877889**************98876444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 2653.70
//
Query:       KKY23915.1  [L=217]
Description: putative glutamyl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.7e-73  244.2   0.0    9.9e-73  244.0   0.0    1.0  1  DUF4202        Domain of unknown function (DUF4202)
  ------ inclusion threshold ------
      0.087   12.2   0.0       0.11   11.9   0.0    1.1  1  Transcrip_reg  Transcriptional regulator


Domain annotation for each model (and alignments):
>> DUF4202  Domain of unknown function (DUF4202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.0   0.0   1.1e-76   9.9e-73       2     185 ..      14     195 ..      13     196 .. 0.96

  Alignments for each domain:
  == domain 1  score: 244.0 bits;  conditional E-value: 1.1e-76
     DUF4202   2 kalaaideahaeDPnkeeaeekeskpkellyaqkmtewlaklepeasealrlAaraqhlrRwevpRssYpegragYlkWRtelkkrqAelaaelleeag 100
                 +al++id+ah+ DP+++     +s p+el+ya++mt++l+ l+p++s+al lA+raqh+rRwe+pRssYp gr  YlkWRte+k+++A+ a+++++++g
  KKY23915.1  14 EALQQIDAAHTLDPTSHPP---SSPPNELHYANRMTHYLHLLQPSPSPALTLAIRAQHFRRWEIPRSSYPPGRLPYLKWRTEQKNQAAKSARQICLDCG 109
                 69************66655...4459************************************************************************* PP

     DUF4202 101 ydeeeiervaalvrkeelkr.deetqlLEDvacLvFLedqfeeFakkheedeeklvdilrkTwaKmseegrelalklelseelkel 185
                 ++ +e++rva+l+rke+lk+ dee+q+LEDvacLvFL++qfe+F+k+ + +eek+v+ilrkTw Kmse+gr++alkl++ e+ ++l
  KKY23915.1 110 IELHEADRVASLIRKEGLKQnDEEAQILEDVACLVFLDEQFEDFEKEWDGTEEKMVGILRKTWGKMSEKGRQEALKLDVGERGRKL 195
                 *******************7699**********************99977******************************999887 PP

>> Transcrip_reg  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.3e-05      0.11      99     168 ..      89     160 ..      78     185 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.3e-05
                    EEES-HHHHHHHHHHHHHHTT-EEE-TTSSGGGEEEEEEEEEECCHCT-HHHHHHHHHHHHTESEEEEE...T CS
  Transcrip_reg  99 alTdnknrtaaevrsifsknggnlgesgsvsflFerkgvivveekeeevdedelleaaieaGaeDveed...e 168
                      T+ kn++a++ r+i+  +g +l e+  v+ l  + g+ +  ++e+++ ed +  + ++   eD+e++   +
     KKY23915.1  89 WRTEQKNQAAKSARQICLDCGIELHEADRVASLIRKEGLKQN-DEEAQILEDVACLVFLDEQFEDFEKEwdgT 160
                    679***********************************9998.6667********************965331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1562.14
//
Query:       KKY23916.1  [L=240]
Description: putative proteasome regulatory particle subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-53  177.7   0.3    5.2e-14   52.6   0.0    3.3  4  Ank_2      Ankyrin repeats (3 copies)
    5.8e-32  109.3   0.6    4.1e-10   39.7   0.0    4.7  5  Ank_5      Ankyrin repeats (many copies)
      7e-30  103.0   5.1    1.3e-07   32.0   0.1    5.2  5  Ank_4      Ankyrin repeats (many copies)
    2.8e-27   91.8   2.2     0.0032   17.8   0.0    6.2  6  Ank_3      Ankyrin repeat
    6.1e-24   83.4   7.5    0.00038   20.8   0.0    6.1  6  Ank        Ankyrin repeat
  ------ inclusion threshold ------
      0.036   13.6   0.5       0.13   11.8   0.1    2.0  2  Shal-type  Shal-type voltage-gated potassium channels, N-term
       0.25   10.9   0.0       0.47   10.0   0.0    1.3  1  DUF4796    Domain of unknown function (DUF4796)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0     2e-17   5.2e-14       2      82 ..      11     108 ..       8     109 .. 0.82
   2 !   44.0   0.0   9.9e-15   2.5e-11      12      77 ..      55     136 ..      54     142 .. 0.77
   3 !   51.6   0.1   4.1e-17     1e-13      10      77 ..      92     169 ..      86     176 .. 0.84
   4 !   44.8   0.0   5.4e-15   1.4e-11      24      83 .]     143     209 ..     135     209 .. 0.88

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 2e-17
       Ank_2   2 hlAakngnlelvklLlegadpn.....k.ngktaLhyAakngnleivklLleh.........adndgrtpLhyAars....ghleivklLlekgadinl 81 
                 h A+++g+++lv+ Ll +a+p+     + +g+ ++h+A+ +++l i+ lL++          +d +g+tpL+++++     g +e+v+lLl k+ad+nl
  KKY23916.1  11 HAASRDGKTSLVESLL-NANPKlsalvDdDGRLPIHWACAYNHLPIINLLMNIrrppfdpdvTDASGWTPLMISCSLpngdG-SEAVNLLLSKDADPNL 107
                 6677779899******.555555454427**********************934566577766699*********8898755.5*******99*****9 PP

       Ank_2  82 k 82 
                 k
  KKY23916.1 108 K 108
                 8 PP

  == domain 2  score: 44.0 bits;  conditional E-value: 9.9e-15
       Ank_2  12 lvklLl....egadpn..k.ngktaLhyAak..ngnl.eivklLleh.ad.....ndgrtpLhyAarsghleivklLlekga 77 
                 +++lL+      +dp+  +  g+t+L+++++  ng+  e+v lLl++ ad     n g+t+Lh+A ++++l+i++ Ll ++a
  KKY23916.1  55 IINLLMnirrPPFDPDvtDaSGWTPLMISCSlpNGDGsEAVNLLLSKdADpnlktNGGQTALHFATSKQNLDICRTLLANKA 136
                 678888555444777775479**********77564459******988444455799**********9**********7655 PP

  == domain 3  score: 51.6 bits;  conditional E-value: 4.1e-17
       Ank_2  10 lelvklLl.egadpn.k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekga 77 
                 +e+v+lLl + adpn k   g+taLh+A++++nl+i+++Ll++       d+ g+ pLh Aa  g+  i++lLl+ g 
  KKY23916.1  92 SEAVNLLLsKDADPNlKtnGGQTALHFATSKQNLDICRTLLANkavartKDKRGQLPLHRAAAIGNVPILRLLLKEGK 169
                 589*****9999999945689********************977886655599*********88**********6664 PP

  == domain 4  score: 44.8 bits;  conditional E-value: 5.4e-15
       Ank_2  24 kngktaLhyAakngnleivklLleh.......adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 k g+ +Lh Aa  gn+ i++lLl++       +d dg t+Lh+A+++gh +i+  L++ gadi++kd
  KKY23916.1 143 KRGQLPLHRAAAIGNVPILRLLLKEgkspldaTDIDGSTALHHAISEGHGDIAIELMKAGADITKKD 209
                 3799****99999999*******9677897766699*********************88*****998 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0031       7.8      18      43 ..       8      31 ..       2      34 .. 0.82
   2 !   31.4   0.0   6.6e-11   1.7e-07      13      53 ..      37      80 ..      32      82 .. 0.93
   3 !   39.7   0.0   1.6e-13   4.1e-10       1      56 []      98     152 ..      98     152 .. 0.96
   4 !   20.1   0.0   2.2e-07   0.00057      11      52 ..     140     182 ..     139     182 .. 0.96
   5 !   25.8   0.0   3.6e-09   9.2e-06       1      54 [.     164     217 ..     164     219 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0031
       Ank_5 18 tpLhvAakygaadvvrlLlargadln 43
                 ++h A++ g  ++v+ Ll  +a+++
  KKY23916.1  8 FAIHAASRDGKTSLVESLL--NANPK 31
                689****************..66665 PP

  == domain 2  score: 31.4 bits;  conditional E-value: 6.6e-11
       Ank_5 13 dgggntpLhvAakygaadvvrlLl...argadlnltdsrGltal 53
                d +g +p+h+A+ y+++++++lL+    ++ d+++td++G+t+l
  KKY23916.1 37 DDDGRLPIHWACAYNHLPIINLLMnirRPPFDPDVTDASGWTPL 80
                56677**************************************8 PP

  == domain 3  score: 39.7 bits;  conditional E-value: 1.6e-13
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 Ll+++ ad+n + +gg+t+Lh+A +++++d++r Lla+ a ++++d+rG+++l+ A
  KKY23916.1  98 LLSKD-ADPNLKTNGGQTALHFATSKQNLDICRTLLANKAVARTKDKRGQLPLHRA 152
                 78888.***********************************************976 PP

  == domain 4  score: 20.1 bits;  conditional E-value: 2.2e-07
       Ank_5  11 rldgggntpLhvAakygaadvvrlLl.argadlnltdsrGlta 52 
                 ++d++g++pLh Aa  g+ +++rlLl +  + l++td +G+ta
  KKY23916.1 140 TKDKRGQLPLHRAAAIGNVPILRLLLkEGKSPLDATDIDGSTA 182
                 57999***********************************998 PP

  == domain 5  score: 25.8 bits;  conditional E-value: 3.6e-09
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 Ll++g   ++++d +g t+Lh+A++ g+ d++++L++ gad++ +d + ++a++
  KKY23916.1 164 LLKEGKSPLDATDIDGSTALHHAISEGHGDIAIELMKAGADITKKDWEDRLAIE 217
                 788888889999*****************************9987766666665 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   7.6e-09     2e-05       4      54 ..       9      59 ..       9      60 .. 0.95
   2 !   23.0   0.1   3.3e-08   8.5e-05       3      43 ..      42      84 ..      41      86 .. 0.87
   3 !   27.6   0.1   1.2e-09   3.2e-06      15      55 .]      93     132 ..      92     132 .. 0.93
   4 !   32.0   0.1   5.1e-11   1.3e-07      11      55 .]     122     165 ..     121     165 .. 0.94
   5 !   24.7   0.0     1e-08   2.6e-05      12      52 ..     156     196 ..     156     198 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 7.6e-09
       Ank_4  4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54
                a+h+a  +g++ lv++Ll+ ++ + a  +++G+ ++h A+  +++ i+ lL
  KKY23916.1  9 AIHAASRDGKTSLVESLLNANPKLSALVDDDGRLPIHWACAYNHLPIINLL 59
                6999*****************************************999877 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 3.3e-08
       Ank_4  3 taLhyaaisgrlelvrlLle.kg..adinaqdnrsGetalhiAa 43
                 ++h+a+++++l+++ lL + ++   d++ + ++sG+t+l i +
  KKY23916.1 42 LPIHWACAYNHLPIINLLMNiRRppFDPDVT-DASGWTPLMISC 84
                58*****************85445578***9.*********998 PP

  == domain 3  score: 27.6 bits;  conditional E-value: 1.2e-09
       Ank_4  15 elvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 e+v lLl+k+ad+n    + G+talh+A ++ n++i + Ll
  KKY23916.1  93 EAVNLLLSKDADPNLK-TNGGQTALHFATSKQNLDICRTLL 132
                 6899***********9.777****************99987 PP

  == domain 4  score: 32.0 bits;  conditional E-value: 5.1e-11
       Ank_4  11 sgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +++l+++r Ll+++a + ++++++G+ +lh+Aa +gnv il+lLl
  KKY23916.1 122 KQNLDICRTLLANKA-VARTKDKRGQLPLHRAAAIGNVPILRLLL 165
                 579********9888.88999***********************8 PP

  == domain 5  score: 24.7 bits;  conditional E-value: 1e-08
       Ank_4  12 grlelvrlLlekgad.inaqdnrsGetalhiAakrgnveilk 52 
                 g+++++rlLl  g++ ++a+ +++G talh+A++ g+ +i++
  KKY23916.1 156 GNVPILRLLLKEGKSpLDAT-DIDGSTALHHAISEGHGDIAI 196
                 799*******9988846666.***************998875 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.044   1.1e+02       5      26 ..       9      29 ..       8      36 .. 0.81
   2 !   17.2   0.0   2.1e-06    0.0053       1      25 [.      39      63 ..      39      71 .. 0.83
   3 !   14.7   0.0   1.4e-05     0.035       2      30 ..      76     106 ..      75     107 .. 0.89
   4 !   15.4   0.0   7.7e-06      0.02       2      25 ..     112     135 ..     111     138 .. 0.91
   5 !   17.0   0.0   2.4e-06    0.0062       2      26 ..     145     168 ..     144     174 .. 0.86
   6 !   17.8   0.0   1.2e-06    0.0032       1      29 [.     178     205 ..     178     207 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.044
       Ank_3  5 pLhlAarsgnleivkfLlenkg 26
                ++h A r g++++v+ Ll+  +
  KKY23916.1  9 AIHAASRDGKTSLVESLLN-AN 29
                5799999999999999999.34 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 2.1e-06
       Ank_3  1 nGetpLhlAarsgnleivkfLlenk 25
                +G+ p+h+A+ +++l+i+ +L +++
  KKY23916.1 39 DGRLPIHWACAYNHLPIINLLMNIR 63
                699*************999998844 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 1.4e-05
       Ank_3   2 GetpLhlAarsgnle...ivkfLlenkgadvn 30 
                 G+tpL++ ++  n +    v +Ll  k ad+n
  KKY23916.1  76 GWTPLMISCSLPNGDgseAVNLLLS-KDADPN 106
                 9*************54458******.9****9 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 7.7e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenk 25 
                 G+t+Lh+A + +nl+i++ Ll nk
  KKY23916.1 112 GQTALHFATSKQNLDICRTLLANK 135
                 9********************964 PP

  == domain 5  score: 17.0 bits;  conditional E-value: 2.4e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkg 26 
                 G+ pLh+Aa  gn++i+++Ll++ g
  KKY23916.1 145 GQLPLHRAAAIGNVPILRLLLKE-G 168
                 999******************95.3 PP

  == domain 6  score: 17.8 bits;  conditional E-value: 1.2e-06
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 +G t+Lh+A++ g+ +i++ L +  gad+
  KKY23916.1 178 DGSTALHHAISEGHGDIAIELMK-AGADI 205
                 699********************.8***8 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0      0.02        50       5      27 ..       9      30 ..       7      36 .. 0.88
   2 !   10.5   0.0   0.00027      0.69       1      22 [.      39      60 ..      39      74 .. 0.78
   3 !   20.8   0.0   1.5e-07   0.00038       2      32 .]      76     110 ..      75     110 .. 0.86
   4 !   12.1   0.0   8.4e-05      0.21       2      23 ..     112     134 ..     111     141 .. 0.85
   5 !   17.6   0.0   1.5e-06    0.0039       2      31 ..     145     176 ..     144     177 .. 0.85
   6 !   17.4   0.0   1.7e-06    0.0045       1      31 [.     178     209 ..     178     210 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.02
                HHHHHHHHTTHHHHHHHHTTTST CS
         Ank  5 PLHlAatngkkriiklLLhGAnl 27
                + H A++ gk++ ++ LL  An+
  KKY23916.1  9 AIHAASRDGKTSLVESLL-NANP 30
                6799999999********.8886 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00027
                TSBBHHHHHHHHTTHHHHHHHH CS
         Ank  1 dGnTPLHlAatngkkriiklLL 22
                dG+ P H+A+ ++++ ii lL 
  KKY23916.1 39 DGRLPIHWACAYNHLPIINLLM 60
                7999***************996 PP

  == domain 3  score: 20.8 bits;  conditional E-value: 1.5e-07
                 SBBHHHHHH...HHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   2 GnTPLHlAa...tngkkriiklLL.hGAnlnaldn 32 
                 G+TPL++ +   ++++ + + lLL + A++n+++n
  KKY23916.1  76 GWTPLMISCslpNGDGSEAVNLLLsKDADPNLKTN 110
                 9******997776666********667*****997 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 8.4e-05
                 SBBHHHHHHHHTTHHHHHHHH.T CS
         Ank   2 GnTPLHlAatngkkriiklLL.h 23 
                 G T+LH A +  +++i++ LL +
  KKY23916.1 112 GQTALHFATSKQNLDICRTLLaN 134
                 99*****998899*******943 PP

  == domain 5  score: 17.6 bits;  conditional E-value: 1.5e-06
                 SBBHHHHHHHHTTHHHHHHHH.TT.TSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hG.Anlnald 31 
                 G  PLH+Aa +g++ i++lLL  G + l+a+d
  KKY23916.1 145 GQLPLHRAAAIGNVPILRLLLkEGkSPLDATD 176
                 666******9***********87944569998 PP

  == domain 6  score: 17.4 bits;  conditional E-value: 1.7e-06
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 dG T+LH A+++g+ +i+ +L   GA+++ +d
  KKY23916.1 178 DGSTALHHAISEGHGDIAIELMkAGADITKKD 209
                 8*********999999******78****9988 PP

>> Shal-type  Shal-type voltage-gated potassium channels, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.57   1.4e+03      16      20 ..      76      80 ..      74      87 .. 0.75
   2 ?   11.8   0.1   5.2e-05      0.13       7      20 ..     147     160 ..     147     165 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.57
   Shal-type 16 GWvPv 20
                GW P+
  KKY23916.1 76 GWTPL 80
                9*998 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 5.2e-05
   Shal-type   7 LPFaRAAAIGWvPv 20 
                 LP  RAAAIG vP+
  KKY23916.1 147 LPLHRAAAIGNVPI 160
                 8999*********9 PP

>> DUF4796  Domain of unknown function (DUF4796)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00018      0.47      68     116 ..     177     226 ..     161     234 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00018
     DUF4796  68 yenekdLHigitdskgkv.veydkkGvqkdeekWeqcvlvekvseslleq 116
                  + ++ LH +i++ +g++ +e  k G   ++++We+ +++e v++s +++
  KKY23916.1 177 IDGSTALHHAISEGHGDIaIELMKAGADITKKDWEDRLAIELVPDSKVRK 226
                 567899***********956******************999999887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1707.77
//
Query:       KKY23917.1  [L=866]
Description: putative m protein repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-40  137.4  12.1    2.2e-40  137.4  12.1    7.4  9  TMF_TATA_bd   TATA element modulatory factor 1 TATA binding
    1.1e-15   57.4  14.6    1.1e-15   57.4  14.6    8.5  8  TMF_DNA_bd    TATA element modulatory factor 1 DNA binding
    0.00057   20.2   6.6    0.00057   20.2   6.6    6.7  7  ATG16         Autophagy protein 16 (ATG16)


Domain annotation for each model (and alignments):
>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   5.6     0.076   4.5e+02      19      79 ..     215     276 ..     201     283 .. 0.68
   2 ?   -4.6  10.2         3   1.8e+04      13      82 ..     296     365 ..     283     382 .. 0.70
   3 ?   -8.4  16.1         3   1.8e+04      11      85 ..     343     417 ..     333     449 .. 0.64
   4 ?   -9.5  19.7         3   1.8e+04      21      78 ..     431     489 ..     392     507 .. 0.48
   5 ?   -3.8   8.3       2.5   1.5e+04      57      92 ..     468     503 ..     458     536 .. 0.52
   6 ?   -1.7   7.2      0.55   3.3e+03      50      92 ..     555     597 ..     512     602 .. 0.47
   7 !    5.0   4.3    0.0045        27      14      46 ..     599     631 ..     595     654 .. 0.87
   8 ?   -4.0   0.0       2.9   1.8e+04       7      26 ..     700     719 ..     696     723 .. 0.80
   9 !  137.4  12.1   3.7e-44   2.2e-40       2     114 ..     751     863 ..     750     864 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.076
  TMF_TATA_bd  19 seirrlEgElaslkeelerleaerdeareeivklmkeneelkel.kkeleelekeleelqer 79 
                  +e+   Eg  +++ ++ e  +a  +e++e ++kl +e ee +++ ++el e ++++++lq++
   KKY23917.1 215 TELNAFEGSAHEMATTHEAQKAFANEMKETLAKLQAEHEEAEKKwQEELLEYTERMDALQSK 276
                  55666667777777777777777777777777777666665443266677777777777766 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 3
  TMF_TATA_bd  13 lverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryet 82 
                     ++++++ +++  +a l+ee ++l++   + +  i kl +++ e ++ +k+l+ +  ++e+ ++r ++
   KKY23917.1 296 PTGSMEQKLLEKDEKIALLMEEGQKLSKTEFSHTTTIKKLRAQTTEGQKIQKDLRLQIGQIEKEKQRADE 365
                  4568999999999999999999999999999999999999988888888887766555555555555442 PP

  == domain 3  score: -8.4 bits;  conditional E-value: 3
  TMF_TATA_bd  11 vqlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlLe 85 
                  +++ + l  +i + E E++ + e+ +r e   ++a+e+  + +k   + ++l +e + l + +++++ ++  +L+
   KKY23917.1 343 QKIQKDLRLQIGQIEKEKQRADERAKRAELMAKRAEEQAKSSSKHDRDHEALLRERNALAATISDMKAQLARALT 417
                  556677888999999999999999999888888888777777777767777777777777766666555555543 PP

  == domain 4  score: -9.5 bits;  conditional E-value: 3
  TMF_TATA_bd  21 irrlEgElaslkeelerleaerdeareeivklm.keneelkelkkeleelekeleelqe 78 
                  + r   ++++lk+++++ + e +  ++ + + + +  e+l+++k+ ++ le+el+  q+
   KKY23917.1 431 LEREKRQVMELKDDISSQKIEHELKEQKLRRDLkELKETLDKEKELSKALEAELRGEQS 489
                  23333333334444444333333333333332212233344444444444444444444 PP

  == domain 5  score: -3.8 bits;  conditional E-value: 2.5
  TMF_TATA_bd  57 eelkelkkeleelekeleelqeryetlLellGeksE 92 
                  e+l+++k+ ++ le+el+  q+  e  Le l  ++E
   KKY23917.1 468 ETLDKEKELSKALEAELRGEQSAMERKLETLRTRAE 503
                  444444444444444444444444444444444433 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 0.55
  TMF_TATA_bd  50 vklmkeneelkelkkeleelekeleelqeryetlLellGeksE 92 
                   +      + ++++ + + le+ le+ +er + l   l e++ 
   KKY23917.1 555 SREEDLRRKARDANLKAKRLETDLEKAHERVDDLQRSLSERES 597
                  2222222233333334444444444444444444444444444 PP

  == domain 7  score: 5.0 bits;  conditional E-value: 0.0045
  TMF_TATA_bd  14 verlsseirrlEgElaslkeelerleaerdear 46 
                  +e+ls ++ + E Ela++++++er ++ +++a 
   KKY23917.1 599 FEKLSRRVEQNEEELAAVRKDYERQSQTQEAAF 631
                  699*********************999988774 PP

  == domain 8  score: -4.0 bits;  conditional E-value: 2.9
  TMF_TATA_bd   7 agpsvqlverlsseirrlEg 26 
                   ++s + ++r +s ++  E+
   KKY23917.1 700 RQNSLTSMSRTQSHLHAFET 719
                  67888999999999998775 PP

  == domain 9  score: 137.4 bits;  conditional E-value: 3.7e-44
  TMF_TATA_bd   2 sstssagpsvqlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlLellGeksEeveELra 99 
                  +st++agpsvqlver+s+++rrlE+E a++k+el+rl+a+rdearee+v+lm+e+e++ +++++++ le+e +++++ry+t+Le+lGeksE veEL+a
   KKY23917.1 751 VSTVGAGPSVQLVERMSANVRRLETERAASKDELARLTAQRDEAREEVVSLMREVEQKLAADERIRALEQETQQMNDRYQTTLEMLGEKSELVEELKA 848
                  799*********************************************************************************************** PP

  TMF_TATA_bd 100 DvaDlKemykeqveq 114
                  DvaDlK++y+e+v++
   KKY23917.1 849 DVADLKKIYRELVDS 863
                  *************86 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   2.9      0.02   1.2e+02      22      64 ..     243     285 ..     233     293 .. 0.65
   2 !   57.4  14.6   1.8e-19   1.1e-15       1      74 []     298     371 ..     298     371 .. 0.98
   3 ?   -2.9   5.2       1.2   7.3e+03      23      59 ..     393     429 ..     389     456 .. 0.52
   4 ?  -11.0  18.7         3   1.8e+04      25      63 ..     446     484 ..     433     529 .. 0.68
   5 ?   -0.1   1.3      0.16   9.6e+02      19      53 ..     502     536 ..     495     563 .. 0.65
   6 !    9.7   7.0   0.00014      0.85      22      73 ..     558     609 ..     553     610 .. 0.94
   7 ?   -1.6   4.2      0.48   2.9e+03      69      71 ..     804     806 ..     762     832 .. 0.45
   8 ?   -1.3   5.1      0.38   2.3e+03      27      69 ..     807     849 ..     794     859 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.02
  TMF_DNA_bd  22 ekLskkelklnntikkLrkknkelekeikelkkkleklekele 64 
                 e L+k + +++++ kk ++++ e ++ ++ l++kl  l+ke++
  KKY23917.1 243 ETLAKLQAEHEEAEKKWQEELLEYTERMDALQSKLFYLTKEVS 285
                 4566666666666666666666666666666666666555555 PP

  == domain 2  score: 57.4 bits;  conditional E-value: 1.8e-19
  TMF_DNA_bd   1 sslekklkeKDeqIaqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlkeae 74 
                 +s+e kl eKDe+Ia LmeEG+kLsk+e  + +tikkLr++  e  k +k+l  ++ + eke ++  er+k+ae
  KKY23917.1 298 GSMEQKLLEKDEKIALLMEEGQKLSKTEFSHTTTIKKLRAQTTEGQKIQKDLRLQIGQIEKEKQRADERAKRAE 371
                 5899********************************************************************98 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.2
  TMF_DNA_bd  23 kLskkelklnntikkLrkknkelekeikelkkklekl 59 
                 +L  + ++l +ti+ ++++++ + +  ++ ++k ++ 
  KKY23917.1 393 ALLRERNALAATISDMKAQLARALTRAETAENKAQTD 429
                 5666666666666666666666653333333222221 PP

  == domain 4  score: -11.0 bits;  conditional E-value: 3
  TMF_DNA_bd  25 skkelklnntikkLrkknkelekeikelkkkleklekel 63 
                 s++  +++ +  kLr ++kel +++++ k+  + le el
  KKY23917.1 446 SSQKIEHELKEQKLRRDLKELKETLDKEKELSKALEAEL 484
                 555555666666666666666666666555555555554 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.16
  TMF_DNA_bd  19 eEGekLskkelklnntikkLrkknkelekeikelk 53 
                 +E +  s+++ kl  +i  L+++ + + ++ +  +
  KKY23917.1 502 AEVTSSSDSQAKLLRQIETLQSQYAAASENWRGIE 536
                 56666777777777777777777777776665554 PP

  == domain 6  score: 9.7 bits;  conditional E-value: 0.00014
  TMF_DNA_bd  22 ekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlkea 73 
                 e+L+ k ++ n + k+L  +++++ + +++l++ l++ e+e+e+l++r ++ 
  KKY23917.1 558 EDLRRKARDANLKAKRLETDLEKAHERVDDLQRSLSERESEFEKLSRRVEQN 609
                 7899999999*************************************99876 PP

  == domain 7  score: -1.6 bits;  conditional E-value: 0.48
  TMF_DNA_bd  69 rlk 71 
                 + +
  KKY23917.1 804 EVE 806
                 222 PP

  == domain 8  score: -1.3 bits;  conditional E-value: 0.38
  TMF_DNA_bd  27 kelklnntikkLrkknkelekeikelkkkleklekeleeleer 69 
                 + l+  + i  L ++ ++++   +++ + l ++++ +eel++ 
  KKY23917.1 807 QKLAADERIRALEQETQQMNDRYQTTLEMLGEKSELVEELKAD 849
                 5566677777777777777766666666666666666666654 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.4      0.76   4.5e+03      27      33 ..     101     107 ..      49     157 .. 0.59
   2 ?    1.8  12.5     0.039   2.3e+02      46     159 ..     203     317 ..     178     329 .. 0.64
   3 ?    2.3  27.2     0.028   1.7e+02      58     181 ..     301     430 ..     280     432 .. 0.81
   4 ?   -3.0  12.6       1.2   7.3e+03     134     183 ..     419     468 ..     409     473 .. 0.73
   5 ?   -6.5  28.3         3   1.8e+04      39     180 ..     478     619 ..     463     619 .. 0.55
   6 ?   -0.1  14.5      0.16   9.4e+02      83     156 ..     571     652 ..     565     662 .. 0.56
   7 !   20.2   6.6   9.5e-08   0.00057      69     163 ..     763     853 ..     703     859 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.76
       ATG16  27 Lldrtsa 33 
                 L +r ++
  KKY23917.1 101 LQERLAK 107
                 2222111 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.039
       ATG16  46 asaks..sksskksakekeasasq......snskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraale 136
                 as+ +  s   +++++e +a + +      ++++q+a  ++++++la+l++e +e+ k+    ++ lle +e +++l++kl   ++++    a+ aa +
  KKY23917.1 203 ASSLPssS---ARPSTELNAFEGSahematTHEAQKAFANEMKETLAKLQAEHEEAEKK---WQEELLEYTERMDALQSKLFYLTKEVSTS-ARAAAAN 294
                 22222221...112222211111123355567789999999999999999999999886...57788999999999998887777777653.4444445 PP

       ATG16 137 tklkdreeelrekeklvqdlqDE 159
                     + e++l ek++ +  l +E
  KKY23917.1 295 APTGSMEQKLLEKDEKIALLMEE 317
                 55556666666666666655555 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.028
       ATG16  58 akekeasasq......snskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelreke 150
                 +++ +++ ++      +++k s++  s ++++++lr++ +e +k + +l  ++ + ++e q+ +e++k+ e   +++e++ ++ ++  +d+e+ lre++
  KKY23917.1 301 EQKLLEKDEKiallmeEGQKLSKTEFSHTTTIKKLRAQTTEGQKIQKDLRLQIGQIEKEKQRADERAKRAELMAKRAEEQAKSSSKHDRDHEALLRERN 399
                 222222222245677666777788889999********************************************************************* PP

       ATG16 151 klvqdlqDElsaLqlqlnqaEeklrklekEN 181
                 +l  ++ D  ++L  +l+ aE + +k ++++
  KKY23917.1 400 ALAATISDMKAQLARALTRAETAENKAQTDA 430
                 **************************99985 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 1.2
       ATG16 134 aletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklrklekENke 183
                 a + + k ++++l+  ++ v +l+D++s+ +++ +  E+klr+  kE ke
  KKY23917.1 419 AETAENKAQTDALEREKRQVMELKDDISSQKIEHELKEQKLRRDLKELKE 468
                 3344455677777778888889*******************987777665 PP

  == domain 5  score: -6.5 bits;  conditional E-value: 3
       ATG16  39 aklekaaasaks..sksskksakekeasasqsnskqsakiqsleqklaqlreelael....yksrgelaqrllelneelqkleeklkedeerlaeleae 131
                 ++le++   ++s  +      + e+++++++  +++s++ ++l  ++ +l+++ a++        g l +rl +l++e ++  ++ +  +++ ++++ +
  KKY23917.1 478 KALEAELRGEQSamE-----RKLETLRTRAE-VTSSSDSQAKLLRQIETLQSQYAAAsenwRGIEGSLLTRLANLEKERDDVVSREEDLRRKARDANLK 570
                 333222222222221.....11122222111.2233333333333333333333333000044467777777777777777777777777777788888 PP

       ATG16 132 raaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklrklekE 180
                  ++let l++  e++ ++++ + +   E + L  +++q+Ee+l  ++k+
  KKY23917.1 571 AKRLETDLEKAHERVDDLQRSLSERESEFEKLSRRVEQNEEELAAVRKD 619
                 8888888888888888888888888888888888888888888777765 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 0.16
       ATG16  83 laqlreelaelyksrgelaqrllelneelqkleeklkedeerlaelea........eraaletklkdreeelrekeklvqdl 156
                  ++l ++l++++ +  +l+ +l e ++e +kl ++ +++ee+la++++        + aa  ++l+d + + re++ + q+l
  KKY23917.1 571 AKRLETDLEKAHERVDDLQRSLSERESEFEKLSRRVEQNEEELAAVRKdyerqsqtQEAAFAQRLEDEKLKWREQTLTYQNL 652
                 4566666777777777777777777777777777666666666655441100000144445555555555555555555555 PP

  == domain 7  score: 20.2 bits;  conditional E-value: 9.5e-08
       ATG16  69 nskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaL 163
                  ++ sa++  le+++a+ ++ela l  +r e  + +++l+ e++++     + +er+++le+e ++++++++   e l ek +lv++l+ +++ L
  KKY23917.1 763 VERMSANVRRLETERAASKDELARLTAQRDEAREEVVSLMREVEQKL----AADERIRALEQETQQMNDRYQTTLEMLGEKSELVEELKADVADL 853
                 5678999*********************************9998764....45689*********************************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2677  (0.149311); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                       169  (0.00942607); expected 17.9 (0.001)
Passed Fwd filter:                        86  (0.0047967); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.31u 0.48s 00:00:02.79 Elapsed: 00:00:00.78
# Mc/sec: 3372.19
//
Query:       KKY23918.1  [L=492]
Description: putative vacuolar atp synthase subunit h [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-81  274.6   0.0    1.4e-81  274.2   0.0    1.1  1  V-ATPase_H_N  V-ATPase subunit H
    1.6e-36  124.9   0.2    4.3e-35  120.3   0.0    2.8  3  V-ATPase_H_C  V-ATPase subunit H
      0.001   18.9   5.3        1.9    8.2   0.3    3.4  3  RIX1          rRNA processing/ribosome biogenesis
  ------ inclusion threshold ------
      0.031   14.4   0.0        7.3    6.8   0.0    2.6  2  DUF4470       Domain of unknown function (DUF4470)


Domain annotation for each model (and alignments):
>> V-ATPase_H_N  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.2   0.0   3.2e-85   1.4e-81       2     315 .]      24     367 ..      23     367 .. 0.98

  Alignments for each domain:
  == domain 1  score: 274.2 bits;  conditional E-value: 3.2e-85
  V-ATPase_H_N   2 vlqelankirarkipWegyvrsqliseedlkliksldkakkeqraklldedgpqyvklll......nLlskl.skedtlqyiLvlidDllsedksrv 91 
                   +l++l+n+irar+ipWeg+vr++ i++e+lk iks+dk++k qr+++++ d ++ ++ll+      ++l+++ +++d++qyiLvl +D++++ +s++
    KKY23918.1  24 YLNSLQNNIRARPIPWEGAVRAGNITDEQLKKIKSVDKVRKDQRKQTIETDPQSFSTLLVgskdgkSVLEHAaRRTDIVQYILVLAADMINDAPSLA 120
                   799*********************************************************************9************************ PP

  V-ATPase_H_N  92 elflslakkeeqdpwkpflkllnrqddfivllalrllakllvqgkkksnklv...esaLnrllqlLssqlssstnevieiavrllqellrtkeyRel 185
                   e++ +  + + ++ + p+l ++++++d+++ll++ +l++l++ + ++s  ++   ++aL++l+++Ls++ +ss+ ++++i+v+++++llrt + R+l
    KKY23918.1 121 EALIK--QPDPYKALTPLLSQSSNPEDPVPLLSSSFLTSLVSVAITTSARTSakdQEALKKLYAYLSTLVKSSDPGLQDIGVQQYSALLRTHDARRL 215
                   *9999..788999*********************************999988999****************************************** PP

  V-ATPase_H_N 186 fve..adgvstlisilr......................stvanstrvgiQlqYqvllclWlLsFekkiaeelvkkk.elipllvdilrdsvKEKvt 257
                   +++  +++v++li+il+                      ++v+    vg+Ql+Y+vll+lW+LsFe k++++ ++ + e+ipl++++lr s+KEK+t
    KKY23918.1 216 LWQqrKETVEPLIDILKnaagtskdsdstiwsgsssmrsAEVSLGGGVGLQLLYHVLLVLWQLSFEGKLVGDELEADyEIIPLYTQLLRLSPKEKTT 312
                   ***************************************9999****************************************************** PP

  V-ATPase_H_N 258 RvilatlrNllekaeksskelaavmvqvkllkllenLeerkfsDeditedleyLkeeL 315
                   R++l+tl Nll+++++s   l++++   +l+++l+nL  r+ +D+d+ edl+ L ++L
    KKY23918.1 313 RLLLSTLNNLLSANPTS---LVPAATAARLPATLSNLRGRHLTDPDLVEDLTALADML 367
                   ***************99...**********************************9987 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.64   2.9e+03      38      92 ..      50     103 ..      44     109 .. 0.50
   2 ?    1.1   0.0     0.093   4.2e+02      38      83 ..     171     219 ..     164     236 .. 0.76
   3 !  120.3   0.0   9.7e-39   4.3e-35       2     117 .]     374     490 ..     373     490 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.64
  V-ATPase_H_C  38 eknfkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekime 92 
                   +++ k +k++ k+ + +++k+++    +  + l+   ++gk+vle+   ++ i++
    KKY23918.1  50 DEQLKKIKSVDKVRK-DQRKQTIETDPQSFSTLLVGSKDGKSVLEHAARRTDIVQ 103
                   555555555555552.333444444444444444444555555555555555554 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.093
  V-ATPase_H_C  38 eknfkllkkLikll...eeskdktvlavalnDigelvkllpegkkvlek 83 
                    k+++ lkkL ++l    +s+d+  + + ++  + l++ ++  + ++++
    KKY23918.1 171 AKDQEALKKLYAYLstlVKSSDPGLQDIGVQQYSALLRTHDARRLLWQQ 219
                   6778999999999977756788888889888888888888877776655 PP

  == domain 3  score: 120.3 bits;  conditional E-value: 9.7e-39
  V-ATPase_H_C   2 ltsfdeYlaElesgkLewspvHksekFWkenaekleeknfkllkkLikll..eeskdktvlavalnDigelvkllpegkkvleklkaKekimelleh 96 
                   +t+fdeY+aE++ g+L+wsp+H++  FW++na+k+ e+  +l +kL++++  + ++dk+vla+a+nDig+lvk++pe+++ lekl+ K+++mel+++
    KKY23918.1 374 QTTFDEYAAEVNGGHLRWSPPHRNAVFWRDNARKILED-KELPRKLAEIIgkNWDNDKKVLAIACNDIGNLVKEVPEKRSDLEKLGLKTRVMELMNE 469
                   79*********************************776.69*********76335779*************************************** PP

  V-ATPase_H_C  97 edeevkyeALkavqkllvqnw 117
                   +de+v++eAL+av ++l +++
    KKY23918.1 470 ADETVRWEALRAVGEWLRYSF 490
                   ****************99876 PP

>> RIX1  rRNA processing/ribosome biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.3   0.00043       1.9      18      98 ..     152     234 ..     129     253 .. 0.68
   2 !    4.5   0.3    0.0059        26     137     170 ..     296     334 ..     293     341 .. 0.76
   3 !    7.0   0.0   0.00097       4.4      45      76 ..     458     489 ..     416     492 .] 0.85

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00043
        RIX1  18 psilstlashkllceellkseleelvhklvtrilsLlqskspegrwaGvcLakvtve.esg.eellssgstWlrallsiLekp 98 
                 +s l++l s ++ +++ ++++ +e+++kl + +++L++s++p     Gv+   ++ + +     l ++ ++ ++ l+ iL++ 
  KKY23918.1 152 SSFLTSLVSVAITTSARTSAKDQEALKKLYAYLSTLVKSSDPGLQDIGVQQYSALLRtHDArRLLWQQRKETVEPLIDILKNA 234
                 4556666666666666666655559*****************99999998888887742223566677777777777777766 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0059
        RIX1 137 itallqlleee.....letvlealstllplhPttfRpfa 170
                 i+ + qll+ +       + l++l++ll ++Pt++ p a
  KKY23918.1 296 IPLYTQLLRLSpkektTRLLLSTLNNLLSANPTSLVPAA 334
                 455555555445569999***************997766 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.00097
        RIX1  45 klvtrilsLlqskspegrwaGvcLakvtvees 76 
                  l+tr+ +L++  ++  rw +++ ++ + ++s
  KKY23918.1 458 GLKTRVMELMNEADETVRWEALRAVGEWLRYS 489
                 49*********************999888776 PP

>> DUF4470  Domain of unknown function (DUF4470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0016       7.3      15      42 ..      53      98 ..      39     112 .. 0.70
   2 ?    4.7   0.0    0.0075        34      15      42 ..     413     450 ..     401     466 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0016
     DUF4470 15 k..................edeendlniLllgsgDlRhvlktiasl 42
                                   e + ++++ Ll+gs D ++vl+ +a++
  KKY23918.1 53 LkkiksvdkvrkdqrkqtiETDPQSFSTLLVGSKDGKSVLEHAARR 98
                3444455555544444444445669****************99998 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0075
     DUF4470  15 k..........edeendlniLllgsgDlRhvlktiasl 42 
                 +          ++ +nd ++L +++ D+ +++k + ++
  KKY23918.1 413 ElprklaeiigKNWDNDKKVLAIACNDIGNLVKEVPEK 450
                 344444444445668899**************988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      595  (0.0331865); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.52
# Mc/sec: 2849.32
//
Query:       KKY23919.1  [L=891]
Description: hypothetical protein UCRPC4_g02732 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0094   16.0  19.8     0.0094   16.0  19.8    5.1  4  Rootletin  Ciliary rootlet component, centrosome cohesion
  ------ inclusion threshold ------
      0.026   14.2   0.3       0.15   11.8   0.1    2.3  2  HeH        HeH/LEM domain
        2.7    5.4  68.3       0.22    9.0   3.2    3.1  3  DUF3584    Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0  19.8   1.6e-06    0.0094       9     121 ..     316     430 ..     310     453 .. 0.83
   2 ?   -8.9  16.4         3   1.8e+04      18     123 ..     440     576 ..     424     648 .. 0.44
   3 ?   -6.0  22.8         3   1.8e+04      41     163 ..     613     752 ..     585     778 .. 0.46
   4 ?   -2.5   5.0      0.75   4.5e+03      19      88 ..     821     888 ..     812     890 .. 0.52

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.6e-06
   Rootletin   9 eaqqrqaqLvskLqaKvlqYkkrcseleqrllektselektkltlll.ssareleeeesadleealakLeeErqrseklaqvnslLreqleearqanea 106
                  ++q+ aqL  +L +K ++ + + + le++++  + ++ +++ +++     ++++++ +a+le a+++L eErq  e+++++ + Lr +le+ r++ ++
  KKY23919.1 316 RSEQERAQLKVSLSQKWQDERSKRKALEAHVQLLEEQVASSRREKTDaGALESRARDLEASLEDARRRLAEERQIKENFEDLLTALRVDLEQHRHERDN 414
                 578999**********************999884444444333333324568999******************************************** PP

   Rootletin 107 Ltedl.qkltkdwerl 121
                 L++++  +l++++ ++
  KKY23919.1 415 LRDEVvPQLKAELANV 430
                 ***9725777777665 PP

  == domain 2  score: -8.9 bits;  conditional E-value: 3
   Rootletin  18 vskLqaKvlqYkkrcseleqrllektselektkltlll....................................ssareleeeesadleealakLee.E 79 
                 v+++q+ +l  k+  + l +  +  ++e++++  +  +                                    s+ ++++  ++++ +++l++ ++ E
  KKY23919.1 440 VERMQQEILALKRENAVLTNARKM-QMEMQQNASRF-NsiaeegrpaspqntigltrsnslarvgrgaarsgslSRSNSVSGRNQDSRDTLLERVKDiE 536
                 667777777777776666533222.22222222211.12333444444444444444444444444444444443334444444444455555544434 PP

   Rootletin  80 rqrseklaqvnslLreqleearqaneaLtedlqkltkdwerlre 123
                  qr +   +v slL  q  + r+  ++    ++ l+++ +++ +
  KKY23919.1 537 AQRDALHRAVKSLLERQAFQNREHEKR----VRILESERDQAMD 576
                 444444444444444444444333332....1122222222222 PP

  == domain 3  score: -6.0 bits;  conditional E-value: 3
   Rootletin  41 e...........ktselektkltlll.ssareleeeesadleealakLeeErqrsekl......aqvnslLreqleearqaneaLtedlqkltkdwerl 121
                             + +e+e+++l+++l +++  + e+ s++l+ea ++Le +rq+ e+       +++ + L eql  + + +e L + +++     ++l
  KKY23919.1 613 CekglsglkmdlDRAEQETSSLRNILqEHEIDVPEHLSSSLQEAYSQLEADRQQVESAkgsagsLEEEQRLAEQLRDSAERSEGLASQVRQQLYTNKSL 711
                 244443333333222222222222223222223333333446666666666555444311111134455555555555555555555555555555555 PP

   Rootletin 122 reeleqkekewreeeeafneylssehsrllsLWrevvavrrq 163
                 r+ l +  ++ + ++++ ++ +++ +s+l +L  + v++ +q
  KKY23919.1 712 RDRLAEAVSKGEINQQSSASKITNLQSKLKKL-EDTVTLAQQ 752
                 55555555555555555555555555555555.333333333 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 0.75
   Rootletin  19 skLqaKvlqYkkrcseleqrllektselektkltlll.ssareleeeesadleealakLeeErqrseklaq 88 
                 + L +Kv +  k  s+ ++ + +   +++  ++      + +  ++e  +++ ++ a+ + Er+r + l+q
  KKY23919.1 821 EHLENKVRELEKALSDADKDMGDVVGRMNLAQI---EvAELQGERDEALRQTRRLQAEIQAERERMQALLQ 888
                 566677777777777777666662222222222...11233333334444445666677777777777766 PP

>> HeH  HeH/LEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.31   1.9e+03       6      14 ..     420     428 ..     420     430 .. 0.89
   2 ?   11.8   0.1   2.4e-05      0.15       9      23 ..     634     648 ..     632     650 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.31
         HeH   6 VaqLRriLv 14 
                 V+qL+++L+
  KKY23919.1 420 VPQLKAELA 428
                 9*****996 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.4e-05
         HeH   9 LRriLvehgveyPsn 23 
                 LR iL+eh++++P +
  KKY23919.1 634 LRNILQEHEIDVPEH 648
                 9************98 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8  16.3    0.0055        33     248     379 ..     330     459 ..     247     487 .. 0.51
   2 ?    6.8  33.1   0.00017         1     255     502 ..     530     784 ..     520     793 .. 0.82
   3 ?    9.0   3.2   3.6e-05      0.22     457     530 ..     814     887 ..     795     891 .] 0.94

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.0055
     DUF3584 248 eklqeefeqleslelrLsllkgelkadeerlaekqeevqeakaelkqqlrtledelkeaidelnqelsaakaklaakeselealeeqkkkyedadiekl 346
                 +k+q e ++++ le++++ll+ ++ +  +r+++   + + ++++l+++l+  +  l    +e +q +++ ++ l a + +le+  +++++  d+ +++l
  KKY23919.1 330 QKWQDERSKRKALEAHVQLLEEQVAS-SRREKTDAGALESRARDLEASLEDARRRL----AEERQIKENFEDLLTALRVDLEQHRHERDNLRDEVVPQL 423
                 34444444444444444443333222.11222222222222222222222222222....222223333344445555555555555555555555555 PP

     DUF3584 347 kadldqlpsirs...eleeleeeldaltekhqdvqe 379
                 ka+l +++s +    ++e +++e+ al  +   +++
  KKY23919.1 424 KAELANVGSAQGsqfDVERMQQEILALKRENAVLTN 459
                 555555555543111334444444333332222222 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00017
     DUF3584 255 eqleslelrLsllkgelkadeerlaekqeevqeakaelkqqlrtledelkeaidelnqelsaakaklaakeselealeeqkkkyedadieklkadldql 353
                 e ++ +e++   l++++k+  er a +  e +++ + l++++++  d+ + ++   ++e+ ++++++++ +++ + + eqk + e ++++ lk dld++
  KKY23919.1 530 ERVKDIEAQRDALHRAVKSLLERQAFQNREHEKRVRILESERDQAMDNSSPRRRGFENEVITLREEINHLRRRADDALEQKWQCE-KGLSGLKMDLDRA 627
                 56788999999*****************************************************************999999976.79*********** PP

     DUF3584 354 psirseleeleeeld.....altekhqdvqekydrrkqkikeeleeeleklker..leaireekdrlkaaieealeal..esqlrkqleaqkeelneee 443
                 ++  s+l+++ +e++      l ++ q+  +++++++q++++ +  + +  +e+  +e++r++++r    ++++ ++l  +++lr++l ++ ++ + ++
  KKY23919.1 628 EQETSSLRNILQEHEidvpeHLSSSLQEAYSQLEADRQQVESAKGSAGSLEEEQrlAEQLRDSAERSEGLASQVRQQLytNKSLRDRLAEAVSKGEINQ 726
                 *********988886222223555555555556666777777665554433333369999****9997777777777744789**************** PP

     DUF3584 444 kelesrlselklrldsatateEeleqieeadealekaqeelekaeaev.ealqaeeeqlr 502
                 +  +s++ +l+ +l++   t   +++++++d a+ k +ee++  +++   +lq++++ lr
  KKY23919.1 727 QSSASKITNLQSKLKKLEDT--VTLAQQQSDMAMMKHEEEIKVLKDSHnAQLQRAKAGLR 784
                 *******9999999988666..56677789999999999998887765146677666666 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 3.6e-05
     DUF3584 457 ldsatateEeleqieeadealekaqeelekaeaevealqaeeeqlrkkrdeadealqkaerrleqlrqaleele 530
                 l++a  te +  + +e ++al+ a++ +     + + +q e ++l+ +rdea+++ ++ ++ ++  r+++++l 
  KKY23919.1 814 LNQAMKTEHLENKVRELEKALSDADKDMGDVVGRMNLAQIEVAELQGERDEALRQTRRLQAEIQAERERMQALL 887
                 799999***************************************************************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (891 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1867  (0.104133); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.34u 0.38s 00:00:01.72 Elapsed: 00:00:00.57
# Mc/sec: 4693.16
//
Query:       KKY23920.1  [L=838]
Description: putative ornithine carbamoyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-96  322.0   0.0    1.2e-95  320.9   0.0    1.5  1  Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127
    7.8e-45  152.8   0.0    1.2e-44  152.2   0.0    1.3  1  OTCace           Aspartate/ornithine carbamoyltransferase, As
    6.8e-41  139.7   0.0    1.2e-40  139.0   0.0    1.4  1  OTCace_N         Aspartate/ornithine carbamoyltransferase, ca


Domain annotation for each model (and alignments):
>> Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.9   0.0   2.1e-99   1.2e-95     121     519 .]       1     444 [.       1     444 [. 0.94

  Alignments for each domain:
  == domain 1  score: 320.9 bits;  conditional E-value: 2.1e-99
                      ---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCS-CCHHHHHTTTHHCTHHHHHHHHHHHHT-CHHHHHHHHCCHHCCHCC... CS
  Glyco_hydro_127 121 shelYnlgkliegavayyqatgkeklldvatrladyleevleklgdeqlqkalvpehggieealvklyelTgdkrYldlAkrfidergldp... 211
                      +helYn+g+lie+a+ +  + ++++ll v+ r+++ +   ++++g+ + qk+++p+h +ie +l++ly++Tg k+YldlAk+fi+erg+     
       KKY23920.1   1 MHELYNAGHLIEAAIIH-SQGKDQRLLAVIERYTELI---MKTFGPGKHQKHGYPGHPEIELSLIRLYKATGKKKYLDLAKYFIEERGQLNphy 90 
                      69************975.5668899************...************************************************7668** PP

                      ......................T-HCTTT-SSTCGCHHCHHCCHHHHHHHHHHHHHHHHHCTT..HCCHHHHHHHHHHHHHHCB-TTS-B-BCE CS
  Glyco_hydro_127 212 ......................eklaykqdelpvrhqntaigkavRatylysgladvyeetgd..dkllkaaerlwdnvvtkkmyvtGGigakh 281
                                            + ++y+q+++p ++q+t  g+ vR++yl + +ad++ + ++  dk+l +++rlw+n+v kkmy tGG+ga +
       KKY23920.1  91 ydvearergerpnerpgawperRAYWYQQAHKPLLEQDTVEGHSVRVMYLLAAAADLADLDDEfrDKYLPTIRRLWNNMVGKKMYLTGGVGAID 184
                      *******************99888***********************************99875589999************************ PP

                      EECE--STT--HCCCH-....-BHHHHHHHHHHHHHHHHCH--CHHHHHHHHHHHHTTGGGB-TTTS-BBSB--STTTBS--SSSC-BTTTTT- CS
  Glyco_hydro_127 282 dgEaFgppyelpnrlay....aEtCasinmlklarrlleltpdakyadvlEralyNsilagvsldgksffYvnplesgskklrklystkwdsca 371
                      ++E Fg +y lp+ + +    aEtCa i+ +++a+r+l+l+ d ky d+lE +lyN +l+g+s+dgk+f+Yvn l+s + +  ++ + +w++ca
       KKY23920.1 185 QWEGFGINYFLPQATDEggcyAETCAGIGVMMWANRMLQLELDRKYSDILELCLYNCVLTGMSIDGKAFTYVNQLASSPGE--PSRRYDWFDCA 276
                      *************99989999******************************************************998888..55699****** PP

                      CHHHHHHHHCCGGGGGSEEEE........................TTEEEE-S-SSEEEEECGCT.-EEEEEEEE-TTSSSEEEEEEEETT--C CS
  Glyco_hydro_127 372 CCppnglrtvaklgeyiYaes........................ddtvyvnLyiaselklklkg.keveleqetnyPwegkvkltvktqkkae 440
                      CCppn++rt+  l++y++  +                          ++ v+Ly +++l+  l++ + ++leq+t+ Pw+g+v++ + +  +++
       KKY23920.1 277 CCPPNLARTMGFLAGYFWDLKeiqedaesrqmayeldfdyipaepSVKINVHLYSSCTLTQTLADgSILKLEQRTDWPWKGAVEFHL-QTSNQN 369
                      ******************99999999*********9999998754449***************998999******************.78899* PP

                      EEEEEEE-TT-S-EEEEETTEEE--S-STTEEEEEEEE-.-TT-EEEEEE---EEEEE--TT-CCGTTEEEEEETTEEEE CS
  Glyco_hydro_127 441 ftlklRiPgWaaaatltvnGkkvvvkkksdgYleiereW.kkgdkvelelpmsvrleeanpkvrddankvavlrGPlvla 519
                      +t +lRiP+Wa++++++    +++ +++++gYl +  +   +  +  ++ pm +rl++ +p +  +++  av+rGP+v++
       KKY23920.1 370 TTVRLRIPSWADEYKIKP---SLTSAQVENGYLVLPPKYlCENSRFLFTVPMMPRLIKPHPYA--NQSITAVARGPIVYC 444
                      ***************984...457799********9887257789************998865..67889*********9 PP

>> OTCace  Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.2   0.0     2e-48   1.2e-44       1     151 [.     671     824 ..     671     830 .. 0.94

  Alignments for each domain:
  == domain 1  score: 152.2 bits;  conditional E-value: 2e-48
                 CC.EEEEESSTTSHHHHHHHHHHHHCT-EEEEES-TTSSH...-HHHHHHHHHHHHHHT-EEEEESSCHHHHTT-SEEEE--SSETTCCGGHHHHHHHH CS
      OTCace   1 kglkiafvGdkknnvanslikllarlgmdvvlvaPkglep...dkevleeakknakksggsititedleeavkgaDvvytdvwvsmgeekereerlkkl 96 
                 +glkia+vGd+ nnv+ +l +++ +lg++v +++Pkg+e    +k++++ a +++ ++ g+it t  +e+avk+aD+++td+wvsmg+e+e ++rlk++
  KKY23920.1 671 EGLKIAWVGDA-NNVLFDLCIGARKLGVNVAVATPKGYEIpaqMKAIIDDAGESVGENFGKITETAHPEDAVKDADILVTDTWVSMGQEAETQKRLKDF 768
                 69*********.*************************7654458999999999999999**************************************** PP

                 CCCSB-HHHHH..HS-TT-EEEE-S---BTTTB-HHHHTSTTBHHHHHHHHHHHHHH CS
      OTCace  97 kdyqvteellk..lakkdaivlHcLPakrgeEvtdeVfdsprsvvfeqaeNrlhtik 151
                 +++q+t++l k   ak+d++++HcLP  + eEv+deVf sprs+vf++aeNrl+++ 
  KKY23920.1 769 EGFQITSNLAKrgGAKPDWKFMHCLP-RHPEEVADEVFYSPRSLVFHEAENRLWAAI 824
                 ***********777999*********.678***********************9865 PP

>> OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.0   0.0   1.9e-44   1.2e-40       7     148 .]     518     656 ..     513     656 .. 0.96

  Alignments for each domain:
  == domain 1  score: 139.0 bits;  conditional E-value: 1.9e-44
                 GGS-HHHHHHHHHHHHHHHHHHHT....TT-STTTTT-EEEEEESS--HHHHHHHHHHHHHTTSEEEEEESTTTSCTTTGGSTTSSCHHHHHHHHHHHT CS
    OTCace_N   7 edlskeeieelldlaaelkekvkk....ekkekllkgktlallFeepStRTrvSfevAakrlGgkvlslseaediqlssvskgrkEsleDtarvlsryv 101
                 +dls++e+++l+++aa +k+++k+    ++ + +l+g+t+a+ F+++StRTrvS+e A++ lGg++++l+ ++diql+     ++Esl+Dta v+s++v
  KKY23920.1 518 TDLSRAELTALVRNAALHKSAMKSgfisQDLSGSLAGQTVAMTFSKRSTRTRVSTEGAVAALGGHPMFLG-KDDIQLG-----VNESLYDTAVVISSMV 610
                 69*****************999998888888889************************************.88*****.....99************** PP

                 SEEEEEESSHHHHHHHHHHHSSEEEEEEETSSB-HHHHHHHHHHHHH CS
    OTCace_N 102 daiviRhpgaeeleelakyasvpviNagdgdgeHPtQaLaDlltire 148
                 +aiv+R+  ++++ +lak++svpviNa+ +d +HP+Q++aD lti+e
  KKY23920.1 611 SAIVARVGPHSDVADLAKHSSVPVINAL-SDLYHPLQTIADYLTIYE 656
                 ****************************.****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.48
# Mc/sec: 5260.00
//
Query:       KKY23921.1  [L=432]
Description: hypothetical protein UCRPC4_g02734 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-39  136.4  21.9    1.5e-39  136.4  21.9    2.1  2  DUF3984       Protein of unknown function (DUF3984)
  ------ inclusion threshold ------
        7.5    5.9  20.1        0.8    9.0   7.3    2.1  2  CobT          Cobalamin biosynthesis protein CobT


Domain annotation for each model (and alignments):
>> DUF3984  Protein of unknown function (DUF3984)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.4  21.9   1.6e-43   1.5e-39       3     327 ..      29     331 ..      27     336 .. 0.67
   2 ?   -6.1   8.9         2   1.8e+04      81     212 ..     357     391 ..     334     414 .. 0.37

  Alignments for each domain:
  == domain 1  score: 136.4 bits;  conditional E-value: 1.6e-43
     DUF3984   3 rRSstnLnhlsLaPLtsrlPlddddedgeeedyfssakeesessseptaattSylss....rSvPtTPrllShsrsasrtrlhsRsksatgkslstteL 97 
                 rRS++nL+hls aPLt++ P+   d+    + y+++ +e  + +++++  + S l +     SvP TP     srs++r  l++R +s  +       L
  KKY23921.1  29 RRSHPNLHHLSFAPLTPKYPISASDY----DAYIDPLTE--TLHTSASLSHISSLPGpagvLSVPHTPTG---SRSPRR--LSRRVQSNIH-LDNIGTL 115
                 9***********************77....455544432..11222222222222221111566666653...344433..3344443333.3333445 PP

     DUF3984  98 qskksasplhhqrskekkksktrrrrkeasktasekea.dsewllRaGlalasstREekGqsWLvkrasSTsLvserelarerekasrersk.sesrsr 194
                 +s + +s   + +    + + +r++ + + k +s+  + d  wl++aGl+l+ s RE+kGqsWL+kr+sSTsLv       +++++  + +    + ++
  KKY23921.1 116 ASSSIPSGAVSSAG--LGGRFHRTSGHGHRKVHSH--IsDPSWLIHAGLLLTDSSRESKGQSWLSKRDSSTSLVTSPAITTTTSRS-GYFTPvGGNGTH 209
                 54444444433333..4444455555545555544..349**********************************977777666644.344444788899 PP

     DUF3984 195 srrsslstPaalSRrgSrshsaskrgsRvdlamTplesrrtkaessesrsteeseeddeelvPDFvdedirlEmaeleqeelseddessvsassdsesd 293
                 + rs+++tP   SR+ Sr +sa    sR dl mT+l s        ++ +t++s +++ ++ P++ d  i++E+ + + e+ s++d+  +s  s+ses 
  KKY23921.1 210 EPRSARETP-SSSRHHSRVRSAG-GISRRDLRMTSLPS--------KADATAQSPHHKLHVQPNWTDPAIQAEALASQRESDSSSDT--TSEDSESESS 296
                 99*******.99*******9666.469***********........33456666777778***************998888775444..5555777777 PP

     DUF3984 294 eedeedEaevrrLvrergfG..lGsWidrlvewtlf 327
                 e ++e+E+e+ + ++  + G   G+W+d lv+  l+
  KKY23921.1 297 EMEQEAEREITQQMKAGR-GfiFGRWVDGLVDTLLM 331
                 777888888877776533.4459*******997554 PP

  == domain 2  score: -6.1 bits;  conditional E-value: 2
     DUF3984  81 hsRsksatgkslstteLqskksasplhhqrskekkksktrrrrkeasktasekeadsewllRaGlalasstREekGqsWLvkrasSTsLvserelarer 179
                 + ++ks+t  ++s++  q +++++p    +                                                                     
  KKY23921.1 357 QDKTKSQT-SQQSNVTIQDRQKPNPQTATK--------------------------------------------------------------------- 385
                 12222222.122222222222222222222..................................................................... PP

     DUF3984 180 ekasrersksesrsrsrrsslstPaalSRrgSr 212
                                            S   S 
  KKY23921.1 386 ---------------------------SNNLSS 391
                 ...........................222222 PP

>> CobT  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   4.9    0.0073        66     214     239 ..     278     303 ..     238     315 .. 0.48
   2 ?    9.0   7.3   8.9e-05       0.8     190     271 ..     318     400 ..     317     405 .. 0.54

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.0073
        CobT 214 edeeeeedeeeeeeeseeeeeegedd 239
                 +++++++d ++e++ese++e e+e++
  KKY23921.1 278 RESDSSSDTTSEDSESESSEMEQEAE 303
                 11111111111111111111111111 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 8.9e-05
        CobT 190 FaravrqlLqdldlaeesaeepeeedeeeeedeeeeeeeseee.eeegedddkeeqeeaaseeeeeededeesketeaaeaas 271
                 F+r v  l + l + ee++ee++eed++e ++++ + + ++++ ++++++++   q++++++ ++++++++ s+++++++ ++
  KKY23921.1 318 FGRWVDGLVDTLLMFEEEEEENDEEDDNETNTNNTNHNIQDKTkSQTSQQSNVTIQDRQKPNPQTATKSNNLSSSSSTTDPSE 400
                 77888888899999977777777777777777666666655442333333333334444444444444443444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1969  (0.109822); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        44  (0.00245412); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.08u 0.41s 00:00:01.49 Elapsed: 00:00:00.54
# Mc/sec: 2429.74
//
Query:       KKY23922.1  [L=312]
Description: hypothetical protein UCRPC4_g02735 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.1   0.0       0.28   10.9   0.0    1.5  1  Prok_Ub   Prokaryotic Ubiquitin


Domain annotation for each model (and alignments):
>> Prok_Ub  Prokaryotic Ubiquitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.5e-05      0.28       6      33 ..     115     142 ..     114     145 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.5e-05
     Prok_Ub   6 kRvFkyngirLaDpnpklspeeVrdfYa 33 
                 +R+F++  i+L D+ p+  +++V++ Y 
  KKY23922.1 115 EREFTFGNINLRDVGPDEALDTVKERYK 142
                 7***********************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       988  (0.0551063); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.50
# Mc/sec: 1882.92
//
Query:       KKY23923.1  [L=541]
Description: putative mfs multidrug [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-19   68.6  18.4    4.4e-19   68.6  18.4    1.9  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.029   14.7   3.7       0.15   12.4   3.7    2.3  1  YwiC      YwiC-like protein
        0.1   12.8   0.1        0.1   12.8   0.1    2.9  4  DUF2534   Protein of unknown function (DUF2534)
        4.1    7.5  11.2        1.8    8.7   0.1    4.2  4  SPC12     Microsomal signal peptidase 12 kDa subunit (SPC12)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6  18.4   9.8e-23   4.4e-19       2     346 ..      75     452 ..      70     460 .. 0.70
   2 ?   -0.7   0.2      0.12   5.3e+02     226     256 ..     459     488 ..     453     497 .. 0.49

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 9.8e-23
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 +l+++ + l++s+++  +  ++++ +g+s++++     ++  ++a++  +++++s+ +Gr ++  l+lll  ++ + +++a+++ +l+++r+l Gl + 
  KKY23923.1  75 FLIQISINLNASLYANGVK-HISKKFGVSEQAARVPQLTFLCAYAFGCELWAPWSEELGRWPTQQLSLLLVNIWQIPCALAPNFATLVICRLLGGLST- 171
                 5666666677777777777.9*************************************9999************44444668877************7. PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........... 188
                 a+ ++ + ++ad++ ++++  ai++l +++  G+++g+++gg++ ++   +++f+   i++  + ++ l+ +pe++++   ++ ++++           
  KKY23923.1 172 AGGSVTLGVLADMWEPDDQEYAIAFLVLSSVGGSVIGAVIGGFVEEQRTLPWIFWTQLIAGGAVQLIHLIMVPETRSTILLDRIAKKRrkegedvwgpn 270
                 88888888999999999***********************************************88877888888888877777777788888888888 PP

       MFS_1 189 .kgtgpaplvpawkallkdpvlw.....illialllfffgfsglltllply..lqevlgls..glllaglllallalvgailallagrlsdr....... 270
                  ++  + ++++ +  ++++p+ +     i+ + +++ +f  ++++t+l  +  + ++ g++  g ++    la++ l++   + ++++ls         
  KKY23923.1 271 eVRGNKLSMKE-IFTIWSRPFYMlvtepIVAWLSAVSGFSDALIFTFLQGFqpVYKQWGFDtvG-IS----LAFVPLLI---GYVLAYLSFLpsihmfr 360
                 87778888888.6666666655335666444444444445555666665552213555555553.33....33333333...23333333222223333 PP

       MFS_1 271 .....lgr........rrrlllallllllaalglallavtssavllllvlvl....iGf.glgfvfpsllalasdlappeeagtasglfntags 346
                      +g+         + ll  ++l  ++++g+a++++    v ++++ ++    +G+  ++++++s+ + ++ +    +a++a+g + +a+ 
  KKY23923.1 361 qrrrkYGSksvepearLWWLLYVIPLEPIGLIGFAWTSLGPPRVSHWIAPMIfstlVGIaNYSIYQSSIDYTVAAYG--VYAASATGGNDFARD 452
                 44555444666666434444445555558889999999998888888855551334666555555666666655555..566666665555555 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.12
       MFS_1 226 lltllplylqevlglsglllaglllallalv 256
                 +l+ +p+y +   +++ l +a+++la++a++
  KKY23923.1 459 ALYSTPMYSNIGKKYP-LEYASTILAIFAVF 488
                 3444444445555555.44444444444443 PP

>> YwiC  YwiC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   3.7   3.3e-05      0.15      20      95 ..     330     417 ..     291     445 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.3e-05
        YwiC  20 llagpvwahllllvawlvgYlaffplllllkarrrarylk........plliYgavallllllalllq....pallwwallflplvav 95 
                  + g ++a+++ll++ +++Yl f p   ++++rrr++  k        + l+Y +    ++l+ ++++    p++  w++ ++   +v
  KKY23923.1 330 DTVGISLAFVPLLIGYVLAYLSFLPSIHMFRQRRRKYGSKsvepearlWWLLYVIPLEPIGLIGFAWTslgpPRVSHWIAPMIFSTLV 417
                 467799**************************76666555677777779999998777766666665555556766666665544433 PP

>> DUF2534  Protein of unknown function (DUF2534)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.6   7.3e+03      15      53 ..      71      78 ..      60      87 .. 0.53
   2 ?   12.8   0.1   2.2e-05       0.1       6      47 ..     187     228 ..     183     243 .. 0.88
   3 ?   -2.8   0.2       1.6   7.2e+03      43      62 ..     405     424 ..     403     429 .. 0.77
   4 ?   -1.9   0.1       0.9     4e+03      62      73 ..     483     494 ..     450     498 .. 0.55

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.6
     DUF2534 15 llivfivalsvvsratigGvidqYnlPlseWttsmfliq 53
                l                                 mfliq
  KKY23923.1 71 LT-------------------------------IMFLIQ 78
                22...............................344444 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2.2e-05
     DUF2534   6 kegkkfllallivfivalsvvsratigGvidqYnlPlseWtt 47 
                  + + + +a l++  v +sv++ ++ g v++q  lP   Wt 
  KKY23923.1 187 PDDQEYAIAFLVLSSVGGSVIGAVIGGFVEEQRTLPWIFWTQ 228
                 57789*****************999999************96 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.6
     DUF2534  43 seWttsmfliqgamvavYsl 62 
                 s+W + m +   + +a Ys+
  KKY23923.1 405 SHWIAPMIFSTLVGIANYSI 424
                 89999998888888888887 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.9
     DUF2534  62 lvftvllsiPla 73 
                  +f+v+++ P+ 
  KKY23923.1 483 AIFAVFVTTPIY 494
                 245555555555 PP

>> SPC12  Microsomal signal peptidase 12 kDa subunit (SPC12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.3      0.11     5e+02      18      54 ..     202     244 ..     189     246 .. 0.54
   2 ?    8.7   0.1    0.0004       1.8      27      66 ..     327     366 ..     316     370 .. 0.91
   3 ?   -0.8   0.2      0.37   1.6e+03      45      60 ..     411     426 ..     403     443 .. 0.56
   4 ?    1.8   0.1     0.056   2.5e+02      41      61 ..     479     499 ..     475     502 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.11
       SPC12  18 vlsaviafivGyitqd......lkltlyillagvvltllvvvP 54 
                 v ++vi+ ++G ++++      +  t +i +++v l  l++vP
  KKY23923.1 202 VGGSVIGAVIGGFVEEqrtlpwIFWTQLIAGGAVQLIHLIMVP 244
                 4556677777666665122222334455556666666666666 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0004
       SPC12  27 vGyitqdlkltlyillagvvltllvvvPpWpfYnrnplkW 66 
                 +G+ t  ++l+++ ll+g+vl+ l ++P+  ++++ + k+
  KKY23923.1 327 WGFDTVGISLAFVPLLIGYVLAYLSFLPSIHMFRQRRRKY 366
                 78888999**************************998887 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.37
       SPC12  45 vvltllvvvPpWpfYn 60 
                 +++++lv + ++++Y+
  KKY23923.1 411 MIFSTLVGIANYSIYQ 426
                 4445555555555554 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.056
       SPC12  41 llagvvltllvvvPpWpfYnr 61 
                   + ++++++v+ P + fY+ 
  KKY23923.1 479 STILAIFAVFVTTPIYYFYRD 499
                 567789999**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3598.01
//
Query:       KKY23924.1  [L=652]
Description: putative ada hat complex component 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       805  (0.0448993); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 4411.60
//
Query:       KKY23925.1  [L=122]
Description: putative vacuolar transporter chaperone 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-14   53.1   3.9    3.2e-14   53.1   3.9    2.0  2  DUF202    Domain of unknown function (DUF202)
  ------ inclusion threshold ------
        2.6    7.9   9.8       0.14   12.0   3.4    2.3  2  DUF5337   Family of unknown function (DUF5337)


Domain annotation for each model (and alignments):
>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   3.9   3.5e-18   3.2e-14       1      67 [.      24      85 ..      24      86 .. 0.92
   2 ?    1.2   0.3     0.058   5.2e+02      18      30 ..     104     116 ..      98     122 .] 0.61

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 3.5e-18
      DUF202  1 rdglAnERTfLaWlRtslalialglallrffltgepsalgkilglilivlgiltllvglvrylrrqr 67
                ++++AnERTfL+Wl +++ l++l+++ll+f   g+    g+i + ++ +++++t++++lv++++r++
  KKY23925.1 24 KVFFANERTFLSWLNFTVILGGLAVGLLNF---GDSV--GRISAGLFTLVAMATMIYALVTFHWRAK 85
                689**************************8...4443..6999*********************987 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.058
      DUF202  18 lalialglallrf 30 
                 lal+ l++++++f
  KKY23925.1 104 LALALLAAVVVNF 116
                 5556666666555 PP

>> DUF5337  Family of unknown function (DUF5337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.4   1.5e-05      0.14      44      66 ..      62      82 ..      31      93 .. 0.78
   2 ?   -1.8   0.4      0.31   2.8e+03      49      57 ..     106     114 ..     102     120 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.5e-05
     DUF5337 44 alLfdLaAlAaliwalvvtyqlw 66
                a Lf L A+A +i+alv     w
  KKY23925.1 62 AGLFTLVAMATMIYALVTFH--W 82
                68**************9754..3 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.31
     DUF5337  49 LaAlAaliw 57 
                 La lAa + 
  KKY23925.1 106 LALLAAVVV 114
                 444555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 780.03
//
Query:       KKY23926.1  [L=533]
Description: hypothetical protein UCRPC4_g02739 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00022   20.9   5.1    0.00022   20.9   5.1    1.8  2  Lebercilin       Ciliary protein causing Leber congenital ama
     0.0082   15.5   4.4     0.0082   15.5   4.4    1.8  2  GAS              Growth-arrest specific micro-tubule binding
  ------ inclusion threshold ------
      0.024   14.9   3.0      0.024   14.9   3.0    2.3  3  Jnk-SapK_ap_N    JNK_SAPK-associated protein-1
       0.07   13.3   3.9       0.24   11.6   3.9    2.0  1  RasGAP_C         RasGAP C-terminus
        0.1   12.8   2.4       0.34   11.1   2.4    1.9  1  JIP_LZII         JNK-interacting protein  leucine zipper II
       0.15   12.2   2.9       0.14   12.3   1.0    1.9  2  Fib_alpha        Fibrinogen alpha/beta chain family
       0.25   11.1   8.4      0.072   12.9   3.0    2.5  2  DivIC            Septum formation initiator
       0.42   10.9   3.1        1.6    9.0   3.1    2.0  1  Spc24            Spc24 subunit of Ndc80
        3.3    7.9   7.3        1.3    9.1   2.5    2.3  2  MetOD2           Metanogen output domain 2
        5.8    7.4  14.6       0.43   11.1   5.1    2.9  3  APG6_N           Apg6 coiled-coil region
        6.1    6.9  16.0       0.11   12.6   3.8    3.2  3  ADIP             Afadin- and alpha -actinin-Binding


Domain annotation for each model (and alignments):
>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   5.1   1.4e-07   0.00022      52     120 ..       2      71 ..       1      80 [. 0.92
   2 ?   -4.3   0.3       7.7   1.2e+04     153     164 ..     166     177 ..     160     182 .. 0.42

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.4e-07
  Lebercilin  52 edteaeLpqllarhneEvrvlrerlRksqekerelekklkekeaellrlkdklkklkk.LsedknLaere 120
                 ed++a+Lp  ++ ++ E r + +++ ++ ++ +e++ k++e+e+ l++l+d+ k +k+     ++L er+
  KKY23926.1   2 EDKNADLPCQIEHMKGENRDMHKQIEELHARLKEMQAKIQEQEDTLKKLQDSEKFYKNdALFYQQLYERS 71 
                 99**************************************************999988777778888875 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 7.7
  Lebercilin 153 sfrrqlaaekkk 164
                 ++++++ + k+k
  KKY23926.1 166 QQKQEVSKAKRK 177
                 222223333333 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   4.4     5e-06    0.0082      34      92 ..      11      69 ..       5      79 .. 0.90
   2 ?   -3.8   0.4       4.2   6.8e+03      43      52 ..     165     174 ..     152     180 .. 0.39

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5e-06
         GAS 34 eieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlka 92
                +ie++k +++ + k+++e+ ++ k+++ +++++e  +++L+   k+y++d   +++l +
  KKY23926.1 11 QIEHMKGENRDMHKQIEELHARLKEMQAKIQEQEDTLKKLQDSEKFYKNDALFYQQLYE 69
                899*********************************************99988888765 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4.2
         GAS  43 ernekelsei 52 
                 +++++e+s++
  KKY23926.1 165 AQQKQEVSKA 174
                 2222222222 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   3.0   1.5e-05     0.024      85     130 ..      13      58 ..       3      72 .. 0.88
   2 ?   -3.7   0.2       7.7   1.3e+04      42      57 ..     161     176 ..     155     180 .. 0.49
   3 ?   -2.2   0.1       2.7   4.4e+03      55      81 ..     433     459 ..     426     468 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.5e-05
  Jnk-SapK_ap_N  85 dqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelk 130
                    +++++e++++++++e+l+ + +e+++k+++++d l++l+++e+  k
     KKY23926.1  13 EHMKGENRDMHKQIEELHARLKEMQAKIQEQEDTLKKLQDSEKFYK 58 
                    57899***********************************998665 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7.7
  Jnk-SapK_ap_N  42 asrneeeeaeleelre 57 
                     + n+++++e+++ ++
     KKY23926.1 161 NASNAQQKQEVSKAKR 176
                    4445555555444443 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.7
  Jnk-SapK_ap_N  55 lreeleqLeteyerekelrkraeeele 81 
                      ++ e L te e+  + ++  ee l+
     KKY23926.1 433 IDDDEEALMTEFENAIANEEGDEEALL 459
                    556777888888888888887777665 PP

>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   3.9   0.00015      0.24      34      85 ..      22      73 ..      19     186 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
    RasGAP_C 34 IakdirnkgrlrekrkeElesleetlktLseknnylesqlesYkayienvle 85
                  k i +++ + +++++ ++  e+tlk+L++ +++++++   Y++  e++++
  KKY23926.1 22 MHKQIEELHARLKEMQAKIQEQEDTLKKLQDSEKFYKNDALFYQQLYERSVA 73
                568899*************************************998777665 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.4   0.00021      0.34      30      71 .]       7      48 ..       4      48 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00021
    JIP_LZII 30 dLIarvdeLtsereiLreEleslqkakerlesrikelEeelk 71
                dL  ++++++ e+  +++ +e+l++ +++++ +i+e E++lk
  KKY23926.1  7 DLPCQIEHMKGENRDMHKQIEELHARLKEMQAKIQEQEDTLK 48
                67779**********************************998 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.0   8.6e-05      0.14      20      66 ..      10      55 ..       9      73 .. 0.84
   2 ?   -3.2   0.0       5.4   8.8e+03      76      91 ..     423     438 ..     399     465 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.6e-05
                CHHHHCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH CS
   Fib_alpha 20 Cglqdlllkyekdvkkdlekleneleeisnstkeaeelvkeikdslr 66
                C+++  ++  ++d++k++e+l+ +l+e++ + +e e++ k+++ds +
  KKY23926.1 10 CQIE-HMKGENRDMHKQIEELHARLKEMQAKIQEQEDTLKKLQDSEK 55
                5554.588899********************************9865 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.4
                 HHHHHHHHHHHHHCCC CS
   Fib_alpha  76 dnvikksskeleeeil 91 
                 d ++++s+++++++ +
  KKY23926.1 423 DGLVQHSTNTIDDDEE 438
                 4444444444443322 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   3.0   4.4e-05     0.072      18      54 ..      18      54 ..      10      59 .. 0.86
   2 ?   -0.1   0.2      0.48   7.8e+02      38      51 ..     162     175 ..     151     182 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.4e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXX CS
       DivIC 18 aykqlkqeiaalqaelaklkaeneeLeaevkdLksde 54
                  ++++++i++l a l++++a+++e e+ +k+L+++e
  KKY23926.1 18 ENRDMHKQIEELHARLKEMQAKIQEQEDTLKKLQDSE 54
                56899****************************6554 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.48
                 HHHHHHHHHHCC-X CS
       DivIC  38 aeneeLeaevkdLk 51 
                 a n++ ++ev++ k
  KKY23926.1 162 ASNAQQKQEVSKAK 175
                 33334444443332 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.1   0.00096       1.6       4      49 ..       3      51 ..       1      70 [. 0.63

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00096
       Spc24  4 nekfriakelsdleselesleselaelkeeleeleeeseekeser...v 49
                +++ ++  ++++++ e  ++ ++ +el+++l+e++ + +e+e+++   +
  KKY23926.1  3 DKNADLPCQIEHMKGENRDMHKQIEELHARLKEMQAKIQEQEDTLkklQ 51
                5566666677777778888888888888888888888887444433321 PP

>> MetOD2  Metanogen output domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.5   0.00082       1.3      43      82 ..      13      52 ..       3      55 .. 0.89
   2 ?    0.4   0.2      0.43   7.1e+02      51      84 ..     429     462 ..     425     470 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00082
      MetOD2 43 sqtydidddkaevseeieaalknlekkleaqeerlkqikk 82
                +++ ++++d  +  ee++a lk+++ k+++qe  lk++++
  KKY23926.1 13 EHMKGENRDMHKQIEELHARLKEMQAKIQEQEDTLKKLQD 52
                67889999999999**********************9986 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.43
      MetOD2  51 dkaevseeieaalknlekkleaqeerlkqikkel 84 
                 ++ ++ ++ ea + ++e+ + ++e + + +  e+
  KKY23926.1 429 STNTIDDDEEALMTEFENAIANEEGDEEALLAEI 462
                 5566777777777788888877766554444443 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   5.1   0.00026      0.43      49     104 ..       5      60 ..       1      80 [. 0.84
   2 ?   -2.2   0.1       3.3   5.4e+03      60     107 ..     320     332 ..     295     350 .. 0.61
   3 ?    2.1   0.2      0.16   2.5e+02      46      74 ..     438     466 ..     400     495 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00026
      APG6_N  49 leeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwre 104
                  ++l  ++e ++ e +++ ++++el +  +e++a+++++e +l++l++ e+ + ++
  KKY23926.1   5 NADLPCQIEHMKGENRDMHKQIEELHARLKEMQAKIQEQEDTLKKLQDSEKFYKND 60 
                 5566668999*************************************998766554 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.3
      APG6_N  60 ekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreyne 107
                  +e                                   e+  ++++n+
  KKY23926.1 320 TRE-----------------------------------EATAIQQRNN 332
                 333...................................3333333333 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.16
      APG6_N  46 deeleeleeeleklekeeeelleeLkele 74 
                 +  + e e+ +++ e +ee+ll+e++++ 
  KKY23926.1 438 EALMTEFENAIANEEGDEEALLAEIDKAL 466
                 22233344445555556666666655543 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   3.8   6.7e-05      0.11      71     117 ..       7      53 ..       1      66 [. 0.84
   2 ?    0.2   0.4      0.43     7e+02     102     124 ..     155     177 ..     145     185 .. 0.71
   3 ?    0.8   0.4      0.28   4.6e+02      82     124 ..     309     352 ..     287     364 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.7e-05
        ADIP  71 rlqskierlktqleqlerelalvqakerqlekklktleqklknekee 117
                  l  +ie +k ++ + +++++ ++a+++++++k++++e++lk+++++
  KKY23926.1   7 DLPCQIEHMKGENRDMHKQIEELHARLKEMQAKIQEQEDTLKKLQDS 53 
                 55568999999999999999999999999999999999999999875 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.43
        ADIP 102 kklktleqklknekeelqrlkna 124
                  +l + ++ + ++k+e+++ k++
  KKY23926.1 155 INLDEPNASNAQQKQEVSKAKRK 177
                 55666667777777777777664 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.28
        ADIP  82 qleqlerela.lvqakerqlekklktleqklknekeelqrlkna 124
                  +e+  r +  + +++++ ++++++++  ++ +e++++qr +++
  KKY23926.1 309 ASEEVLRANGiTREEATAIQQRNNQEALVCMATERQSAQRGEMD 352
                 55555555665677788888999999999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2269  (0.126555); expected 358.6 (0.02)
Passed bias filter:                     1029  (0.0573931); expected 358.6 (0.02)
Passed Vit filter:                       203  (0.0113224); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.46
# Mc/sec: 3470.92
//
Query:       KKY23927.1  [L=298]
Description: putative integral membrane protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-43  146.3  12.5    1.2e-42  146.0  12.5    1.1  1  SUR7             SUR7/PalI family


Domain annotation for each model (and alignments):
>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.0  12.5   6.5e-47   1.2e-42       9     210 ..       2     226 ..       1     228 [. 0.87

  Alignments for each domain:
  == domain 1  score: 146.0 bits;  conditional E-value: 6.5e-47
        SUR7   9 slaalilllfailgsiknstpltsiylskfdls.gldlaqi.............gladvysfgvwgyC.dnsdvnytkCskpkagypfdp...l.eeln 88 
                  l+a+i+l+++ +g +kn+ +++s+y+++++l+ +++ + +             gl+d+y++g+w +C +++ ++ t+Cskpka y+f+p   + +el 
  KKY23927.1   2 YLVAFIFLILVEIGNLKNKPVIRSTYFLNINLAnIVPIS-VpnavlinsiaqsiGLHDFYQVGLWDFCeGYNGQGITSCSKPKALYWFNPveiIlNELL 99 
                 5899*****************************444444.36**************************99********************443144444 PP

        SUR7  89 sesngkvdlPsnlrktlsklnnltkalfilhiialvlsfislvvgllaicvspdnsrl......lsflnlllsvlsflatllaalldtllfvfvrkkin 181
                  + + +  lPs++ ++l++++ +++++f ++++++vl+f++++++ l+i++++    +       s+  +++++l +l+t++a++++t++f+++r++++
  KKY23927.1 100 AGASIA--LPSSVDDALKLVRIASHWMFGFFLTSTVLTFLLIFIAPLIISHHQRYIHRgrriflRSLPLSIITFLNALFTIIASVIATAMFIIFRNVLT 196
                 444433..*****************************************944433332444444666667***************************** PP

        SUR7 182 .lkefgikaslglkflafaWlalaaallvv 210
                   ++++i+a+lg++++af+W+a  + l+ +
  KKY23927.1 197 sQSDLNIEATLGVRMFAFMWIASGLNLIGF 226
                 **********************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       920  (0.0513135); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2008.67
//
Query:       KKY23928.1  [L=664]
Description: putative tat pathway signal sequence [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.079   12.7   0.0       0.13   12.0   0.0    1.3  1  Peptidase_C93   Bacterial transglutaminase-like cysteine prot


Domain annotation for each model (and alignments):
>> Peptidase_C93  Bacterial transglutaminase-like cysteine proteinase BTLCP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.3e-06      0.13       5      91 ..     122     213 ..     118     225 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.3e-06
  Peptidase_C93   5 tsaPigyvefCkrepkeCaakkkekaevklt.eerlkeleevnasvNeeikpvtdkelygveerWeypkd....gaGdCedyallKrkeLie 91 
                    t+   gyv+fC+r+ ++ ++ ++++++++ + +++ +++ +v +++N+ i+ ++ +++ ++  ++   ++     aG   dy  l rk L++
     KKY23928.1 122 TQPCNGYVDFCSRNFSNITYVAAHNSPFNRKgNAASNQVYDVTTQLNDGIRMLQMQAHLENGTMYLCHTScdilNAGTLTDYLTLVRKWLAA 213
                    55555*************99998888876551677899*************99999988766555444431122356666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.54
# Mc/sec: 3698.52
//
Query:       KKY23929.1  [L=183]
Description: putative adp-ribosylation factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-79  265.0   0.1    2.5e-79  264.7   0.1    1.0  1  Arf              ADP-ribosylation factor family
    3.1e-14   53.2   0.0    4.4e-14   52.7   0.0    1.2  1  Roc              Ras of Complex, Roc, domain of DAPkinase
    6.8e-14   51.7   0.0    8.3e-14   51.4   0.0    1.1  1  SRPRB            Signal recognition particle receptor beta su
    1.9e-13   50.3   1.2    1.6e-09   37.5   0.2    2.2  2  G-alpha          G-protein alpha subunit
    8.1e-13   48.3   0.0    8.8e-13   48.2   0.0    1.1  1  Ras              Ras family
    1.4e-10   41.0   0.0    1.7e-10   40.7   0.0    1.1  1  Gtr1_RagA        Gtr1/RagA G protein conserved region
    3.3e-06   27.2   0.0    5.1e-06   26.5   0.0    1.3  1  MMR_HSR1         50S ribosome-binding GTPase
     0.0066   15.8   0.3      0.027   13.8   0.0    1.8  2  6PF2K            6-phosphofructo-2-kinase
  ------ inclusion threshold ------
      0.055   13.6   0.1      0.098   12.8   0.1    1.5  1  TPM_phosphatase  TPM domain


Domain annotation for each model (and alignments):
>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.7   0.1   1.3e-82   2.5e-79       1     174 [.       5     176 ..       5     177 .. 0.98

  Alignments for each domain:
  == domain 1  score: 264.7 bits;  conditional E-value: 1.3e-82
                 HHHHHHGGTT.TTEEEEEEEESTTSSHHHHHHHHHHSSCEECSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHH CS
         Arf   1 llsilaklklkkkelrilllGLDnaGKtTilkklkleelvttvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRlee 99 
                 +++++++l++ kke+ril++GLD+aGKtTil+klkl+e+vtt+PTigfnve++e+kn++ftvwDvGGq+k+RplW++Yf++t+++ifvvDs+dr+R+ e
  KKY23929.1   5 FSKLFDRLWG-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVIE 102
                 5788999999.**************************************************************************************** PP

                 HHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHHHH CS
         Arf 100 akeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlses 174
                 a+eeL+++l+e+el+++ llv+aNKqDlp+a++++e++++lgl++l+ +r ++iq+++a++g+gl+eglewls+s
  KKY23929.1 103 AREELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRAWYIQSTCATSGDGLYEGLEWLSNS 176
                 ***********************************************.************************997 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   2.2e-17   4.4e-14       1     119 [.      19     129 ..      19     130 .. 0.78

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 2.2e-17
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeWl 99 
                 ++++vG  ++GKt++l ++  +++  ++ +tig ++ t e+            k++++ +WD++Gq+++r l ++y+++ + +i+v+ds++ +++ e  
  KKY23929.1  19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY------------KNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVIEAR 104
                 699*******************996.568*****9966443............5799*******************************88877665555 PP

                 HHHHHHCSSS....-.EEEEEE-TT CS
         Roc 100 kelkkvagks....p.vilvgnkiD 119
                 +el+++ +++      +++ +nk D
  KKY23929.1 105 EELQRMLNEDelrdAlLLVFANKQD 129
                 5555554433111131456679988 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   4.2e-17   8.3e-14       2     137 ..      16     143 ..      15     152 .. 0.88

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 4.2e-17
                 ---EEEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHH CS
       SRPRB   2 skpavllvGlsdsGKTslftrLttdsvkktvtSq.essaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEll 99 
                 ++ ++l+vGl  +GKT+++ +L  +++ +t   +  +  + ++   k+ ++t+ D+ G++k+r     +  + ++ +g++fvvDS  d  +v e  E l
  KKY23929.1  16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIgFNVETVEY---KNIQFTVWDVGGQDKIRPL-WRH--YFQNTQGIIFVVDSN-DRDRVIEAREEL 107
                 5678******************************888999999...*****************75.555..57889*********8.566688889999 PP

                 HHHHHHHHHHTT---EEEEEE-TTSTT---HHHHHHHH CS
       SRPRB 100 yeilliteklkdavdiliACnKqelflakspklikdaL 137
                   +l + e l+da+ +l+  nKq+l  a ++  i d+L
  KKY23929.1 108 QRMLNEDE-LRDAL-LLVFANKQDLPNAMNAAEITDKL 143
                 99999999.66766.67777**************9988 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   4.7e-05     0.094      21      45 ..      15      39 ..       8      44 .. 0.89
   2 !   37.5   0.2   7.8e-13   1.6e-09     185     263 ..      45     112 ..      41     133 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.7e-05
                ..EEEEEEEESTTSSHHHHHHHHHH CS
     G-alpha 21 krevkllllGqseSGKsTilkqlkl 45
                k+e+++l++G +  GK+Til +lkl
  KKY23929.1 15 KKEMRILMVGLDAAGKTTILYKLKL 39
                569*****************99985 PP

  == domain 2  score: 37.5 bits;  conditional E-value: 7.8e-13
                 -----SEEEEEEECT-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC CS
     G-alpha 185 rlktvGisetkfevdsklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicn 263
                  ++t+G++  ++e++ +++f+++dvgGq + r+ W ++f++++ iiF+v   + d v +  e+ +r+          +n
  KKY23929.1  45 TIPTIGFNVETVEYK-NIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVIEAREELQRM----------LN 112
                 478999999999999.*********************************988888877776666666..........33 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   4.4e-16   8.8e-13       2     147 ..      20     164 ..      19     179 .. 0.78

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 4.4e-16
                 EEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrv 100
                 +++vG  a GKt++l++   ++  ++ ++Tig++    +  v+ k++++++wD  Gq++ + l + y+++++gi+ v d ++r+   ++++ ++ + + 
  KKY23929.1  20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--T--VEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVIEAREELQRMLNE 113
                 899*******************9976.9***87654..4..456799************************************9999998666666555 PP

                 ST.TTSEEEEEEETTTGGG...G-SS-HHHHHHHHHHHTSEEEEEBTTTTC CS
         Ras 101 ae.envpivLvGnKvDlee...kravsteegeelakelglkfletSAktne 147
                  e ++  +++ +nK Dl +     +++ + g +  ++       t A +  
  KKY23929.1 114 DElRDALLLVFANKQDLPNamnAAEITDKLGLHSLRQRAWYIQSTCATSGD 164
                 55588999999******9865555666666665555554444455555555 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   8.5e-14   1.7e-10       1     135 [.      19     142 ..      19     162 .. 0.87

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 8.5e-14
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesre.leedletl 98 
                 ++L++G   +GKt++      ++   ++++   ti  + ++v  ++n+++ +wD+gGq+++          + f+n + +i+V+D+++r+ + e+ e+l
  KKY23929.1  19 RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETV-EYKNIQFTVWDVGGQDKIRPLW-----RHYFQNTQGIIFVVDSNDRDrVIEAREEL 107
                 589**********85....5678889999999**********.599*************987664.....899**************997799999999 PP

   Gtr1_RagA  99 keilealrqyspeakvfvlihKmDliqedereeifee 135
                 +++l++  +  ++a + v+ +K Dl + ++ +ei ++
  KKY23929.1 108 QRMLNE--DELRDALLLVFANKQDLPNAMNAAEITDK 142
                 999985..6679999*********9998888888765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   2.6e-09   5.1e-06       1     110 [.      19     122 ..      19     127 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 2.6e-09
                 EEEEEESTTSSHHHHHHHH.HTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHH.HHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinal.tgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseek.glgkaflaleeadlillvvdas.eeklkpldee 96 
                 +++ vG   +GK+t++ +l +g   iv+ +p  T+  n ++v++k+ +++++D+ G  +    +   l +++ +  +++ i++vvd++ ++ + + +ee
  KKY23929.1  19 RILMVGLDAAGKTTILYKLkLG--EIVTTIP--TIGFNVETVEYKNIQFTVWDVGG-QD----KIrPLWRHYFQ--NTQGIIFVVDSNdRDRVIEAREE 106
                 5889***************444..5788787..7777777777779**********.43....22357777775..578*******7764478888899 PP

                 HHHHHHH..TTSEEEE CS
    MMR_HSR1  97 leellee..akkplil 110
                 l+++l+e   ++ l+l
  KKY23929.1 107 LQRMLNEdeLRDALLL 122
                 9999987642222333 PP

>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.3e-05     0.027      12      51 ..      16      55 ..      10      69 .. 0.84
   2 ?   -0.1   0.0      0.23   4.6e+02      89     137 ..      79     129 ..      70     142 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.3e-05
                S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHH CS
       6PF2K 12 sklvivlvGLpargKtyiskkltrylkwlgvrtkvFnvgk 51
                +++ i++vGL a gKt+i  kl      ++++t  Fnv  
  KKY23929.1 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET 55
                56789***************99877778888888888865 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.23
                 HHHHHTS--SEEEEES---SH..HHHHHHHHHHHHTT-EEEEEEEE--HHH CS
       6PF2K  89 laylneeegqvaifDAtNttr..erRklilefveennlkvlflesicsdee 137
                 ++y+++ +g + + D     r  e R+ + ++++e +l+  +l ++++ ++
  KKY23929.1  79 RHYFQNTQGIIFVVDSNDRDRviEAREELQRMLNEDELRDALLLVFANKQD 129
                 589999999999999876554338899999999888888777766666665 PP

>> TPM_phosphatase  TPM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   4.9e-05     0.098      33      95 ..      43     117 ..      33     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.9e-05
                      EEEESB-..TT--HHHHHHHHHHHHST.TTTS.........-S.SEEEEEEETTTTEEEEEE-STTTTT--HHHHH CS
  TPM_phosphatase  33 vvtvdsl..dgediedyadelfdkwgl.gkkk.........kd.ngvllliavddrkvrietgyglegaltdarae 95 
                      v t++++  +  ++ +y +  f  w++ g++k         ++ +g++++++ +dr+  ie  ++l+++l+++++ 
       KKY23929.1  43 VTTIPTIgfN-VETVEYKNIQFTVWDVgGQDKirplwrhyfQNtQGIIFVVDSNDRDRVIEAREELQRMLNEDELR 117
                      6677777422.2244999999999***66666999999999777*******999**************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 1148.51
//
Query:       KKY23930.1  [L=217]
Description: putative 60s ribosomal protein l10a [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-45  154.1   0.1    4.4e-45  153.9   0.1    1.0  1  Ribosomal_L1  Ribosomal protein L1p/L10e family


Domain annotation for each model (and alignments):
>> Ribosomal_L1  Ribosomal protein L1p/L10e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.9   0.1   2.4e-49   4.4e-45       5     204 .]      24     212 ..      16     212 .. 0.95

  Alignments for each domain:
  == domain 1  score: 153.9 bits;  conditional E-value: 2.4e-49
                   S-SSS--EEEEEEEESSS-TTSGGG--EEEEE-STSTSSCS-EEEEE-HHHHH...HHHHTT..-SEEETCHHHHHHT-HHHHHHTCCH-SEEEEEG CS
  Ribosomal_L1   5 akkkfdesveialnlttkkpkkadqrkpgkipLphplgkevkiclitkdpqaeyakeakeagriakviglkklkkkyksfeakrkllkefdlfladd 101
                   +k++f e+ve+++ l++++p++ d+r++g+++Lp   +  ++ic++ ++++ +    ak+ g   + ++ ++lkk  k+++  +kl+ ++d fla+d
    KKY23930.1  24 KKRNFLETVELQIGLKNYDPQR-DKRFSGTVKLPRVPRPGMSICVLGDQHDID---RAKHLG--VDAMSSDDLKKLNKNKKLIKKLARKYDAFLASD 114
                   377899*************666.99****************************...9*****..********************************* PP

                   GGHHHHHHHCHHHHGGGT-S-ECC..CT.BTS-HHHHHHHHCTTEEEEE-TTTSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTSTTTSGSEEEEEE CS
  Ribosomal_L1 102 rimpllpklLGkvfgkrkkmPipvltkgtvkedvkkevekalkstvvvrldkgtclsvkvGklsftaeelaeNieavvkalvekvpkkwkniksiyl 198
                    +++++p+lLG+ ++k++k+P+pv ++   +ed+ +++ ++++ t++++l+k  cl v+vG++++t++el+ Ni+  +++lv+ ++k+w+n+ s+++
    KKY23930.1 115 TLIKQIPRLLGPGLSKAGKFPTPV-SH---NEDLGAKITEVKS-TIKFQLKKVLCLGVAVGNVEMTEDELIGNIMLSINYLVSLLKKGWQNVGSLTI 206
                   ************************.43...79***********.***************************************************** PP

                   EETTS- CS
  Ribosomal_L1 199 kttmsp 204
                   k +msp
    KKY23930.1 207 KASMSP 212
                   *****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1488.02
//
Query:       KKY23931.1  [L=463]
Description: hypothetical protein UCRPC4_g02744 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-28   97.5   0.4    1.9e-27   96.1   0.0    1.9  2  DUF4211   Domain of unknown function (DUF4211)
  ------ inclusion threshold ------
       0.11   12.5   0.8       0.42   10.7   0.1    2.1  2  CARD      Caspase recruitment domain
       0.32   11.0   1.0       0.68   10.0   1.0    1.5  1  LisH      LisH


Domain annotation for each model (and alignments):
>> DUF4211  Domain of unknown function (DUF4211)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.85   5.1e+03      76     101 ..     109     135 ..      91     170 .. 0.58
   2 !   96.1   0.0   3.1e-31   1.9e-27       1     121 [.     208     318 ..     198     327 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.85
     DUF4211  76 de.vegladslvsssaWkpefkkaLea 101
                 d  +++ + + v+ +  ++++++ Lea
  KKY23931.1 109 DStLQQSRTRGVIVNSARDKYRQGLEA 135
                 333444444444444444444444443 PP

  == domain 2  score: 96.1 bits;  conditional E-value: 3.1e-31
     DUF4211   1 dFivededeelgapdeeeeedelplefsskahkdlkehFkdvvewlvsnaldpdfllafeerkdelylvalkklddevegladslvsssaWkpefkkaL 99 
                 dF+++d++    ap        lplefss a++++++hF++vvewlv+n++ p+    f  r+del++ +++k+d+e +g a s++ ss W+ +fk++L
  KKY23931.1 208 DFVEDDDN----AP------IGLPLEFSSWATAPPRQHFRNVVEWLVKNKIAPA----F-GRDDELFKLSFDKIDTEATGQAGSRFVSSTWQGDFKNSL 291
                 67766655....33......459*******************************....7.9************************************** PP

     DUF4211 100 earPelditelease.....ekkCdAc 121
                 earPe++i +++ +       ++C Ac
  KKY23931.1 292 EARPEVQIVKIDNHGgdvawLENCAAC 318
                 *************9999**99****** PP

>> CARD  Caspase recruitment domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.29   1.7e+03      33      73 ..     101     142 ..     100     151 .. 0.75
   2 ?   10.7   0.1   7.1e-05      0.42      19      61 ..     374     418 ..     363     419 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.29
                 HHHHHHHHTSSSHHHH.HHHHHHHHHTSCHHHHHHHHHHHHH CS
        CARD  33 eeeeekikakttrlsk.areLldlvqkkgekacqaflealke 73 
                 ee+ e+ + +t ++s+  ++++++ + k +++ +a+ ++  +
  KKY23931.1 101 EEDLEDLEDSTLQQSRtRGVIVNSARDKYRQGLEALKKSRAQ 142
                 678888888888888845569999999999999998887655 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 7.1e-05
                 HHHHHHHHHTTSS-HHHHHHHHT..SSSHHHHHHHHHHHHHTSCH CS
        CARD  19 sglldyLlekkVLteeeeekika..kttrlskareLldlvqkkge 61 
                 +++ld L++++ Lt e++ +  +  +++r+++a+ ++d +++ ge
  KKY23931.1 374 QYILDLLRANGYLTPEQIVQRDSksQRQREKQAETFIDELESSGE 418
                 579**************99888867888999*******9999886 PP

>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.0   0.00011      0.68       3      16 ..     372     385 ..     371     385 .. 0.98

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHCT- CS
        LisH   3 LNrLIydYLvkeGy 16 
                 LN++I+d L+++Gy
  KKY23931.1 372 LNQYILDLLRANGY 385
                 9************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       870  (0.0485247); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3088.29
//
Query:       KKY23932.1  [L=847]
Description: hypothetical protein UCRPC4_g02745 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-65  219.4   6.0    2.7e-65  219.4   6.0    2.9  3  DUF4449       Protein of unknown function (DUF4449)
  ------ inclusion threshold ------
       0.13   12.8   2.0        1.6    9.3   0.1    2.7  2  Nexin_C       Sorting nexin C terminal
       0.34   11.0   7.7        2.4    8.2   0.0    3.3  3  Prp18         Prp18 domain


Domain annotation for each model (and alignments):
>> DUF4449  Protein of unknown function (DUF4449)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2      0.23   1.4e+03      83     132 ..     200     247 ..     182     258 .. 0.73
   2 ?   -4.0   6.8       2.4   1.4e+04      34     110 ..     217     294 ..     214     314 .. 0.42
   3 !  219.4   6.0   4.5e-69   2.7e-65       1     163 []     643     801 ..     643     801 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.23
     DUF4449  83 dalkkkftkkkekaeekekakkadkkvniavtkedsifpdiklpggistk 132
                 + lk++f k+k   +  e +k+ d+ +n a ++ d     + +++g++++
  KKY23932.1 200 SSLKQQFDKNKPFGKG-ELQKTGDQALNAASNQADARN-GVVNEQGNVDQ 247
                 5678888888888888.455666999999999988765.45555555544 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2.4
     DUF4449  34 iqkalekqirdaleklDaelyevkqeaerakeeaks.........dpenapniy.sryldalkkkftkkkekaeekekakkadkkvn 110
                 +qk+ ++++  a +++Da    v ++ + + ++a++          +++ ++ y +++ d  k+k+ k+kek +++        k++
  KKY23932.1 217 LQKTGDQALNAASNQADARNGVVNEQGN-VDQSASRdaagtgadtAKDQLKSHYdQNVPDETKEKVDKSKEKLNQT--------KAR 294
                 5666666666666666665544443322.11111110112221112222233331333344444444444444442........222 PP

  == domain 3  score: 219.4 bits;  conditional E-value: 4.5e-69
     DUF4449   1 vdvdnLkiklkkSkHklLfklfKPlllkvirpaiqkalekqirdaleklDaelyevkqeaerakeeaksdpenapniysryldalkkkftkkkekaeek 99 
                 v+++nL+ik+kkS+HklLf + KP+llkv+rp+iqk+lekqird+++++D++++++ + a++a e+aksdpenap+i+++y++a+k+++t+kk kae+ 
  KKY23932.1 643 VNIKNLNIKVKKSNHKLLFGIAKPILLKVMRPVIQKVLEKQIRDSFTQADQFAWQINNSANKAIEAAKSDPENAPSIFQQYAEAVKNELTAKKAKAEQ- 740
                 89***********************************************************************************************9. PP

     DUF4449 100 ekakkadkkvniavtkedsifpdiklpggistkateykelaakGekWeSpvFsigsasestdlp 163
                     ++++kvn+avtk+d if+di+lpggistkateykelaakGekWeSpvFsigsa+est+ p
  KKY23932.1 741 ---VASNTKVNMAVTKQDAIFKDINLPGGISTKATEYKELAAKGEKWESPVFSIGSAKESTNFP 801
                 ...488*******************************************************987 PP

>> Nexin_C  Sorting nexin C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2      0.05     3e+02      52     106 ..     274     337 ..     251     341 .. 0.69
   2 ?    9.3   0.1   0.00027       1.6       6      51 ..     660     706 ..     657     753 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.05
     Nexin_C  52 PdgeskaesaperseeeklrtraearklLlellp............dalvsvvGrknaeealkrife 106
                 Pd+++++     +s+e+ ++t+a+    L + +p            + +v++ G++ +++a++++ +
  KKY23932.1 274 PDETKEK---VDKSKEKLNQTKARTANYLKSKMPeerreqtiwrfkKMIVEIQGHSDYQQAIETLLS 337
                 4442222...224445555777777777777777677777776666888888899999999988765 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00027
     Nexin_C   6 altvlkqvlqqllgdtierwlkekiek.ltseeavaslikklrdalW 51 
                 ++ ++k +l++++   i+++l+++i++ +t+ +++a  i++  ++  
  KKY23932.1 660 LFGIAKPILLKVMRPVIQKVLEKQIRDsFTQADQFAWQINNSANKAI 706
                 6789********************************99998776655 PP

>> Prp18  Prp18 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   1.8    0.0056        33      19      85 ..     274     339 ..     260     343 .. 0.69
   2 ?    8.2   0.0    0.0004       2.4      21      71 ..     352     402 ..     340     421 .. 0.79
   3 ?   -3.3   0.1       1.4   8.5e+03      13      37 ..     725     742 ..     717     760 .. 0.38

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0056
       Prp18  19 seeekksvegkkesatlkqtk.edlkpLlkklkkkkleedileklveivkalqkreyvkAndaYlkla 85 
                 ++e+k++v++  +++ l+qtk ++ + L +k+ +++ e+ i +    iv+   + +y++A ++ l+la
  KKY23932.1 274 PDETKEKVDK--SKEKLNQTKaRTANYLKSKMPEERREQTIWRFKKMIVEIQGHSDYQQAIETLLSLA 339
                 3333444333..3333444441445667789999999999***999****************999987 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0004
       Prp18  21 eekksvegkkesatlkqtkedlkpLlkklkkkkleedileklveivkalqk 71 
                 + + +v+g ++ + l+ ++ dlk+L++++ +++ ++d+ e++ +i k + +
  KKY23932.1 352 QGTGTVKGAHDDNSLQIAEADLKTLIERFANSTSTDDLWESINNIYKDADR 402
                 456688999************************************998764 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.4
       Prp18  13 keleerseeekksvegkkesatlkq 37 
                 ++++++ +++k ++e       +  
  KKY23932.1 725 EAVKNELTAKKAKAE-------QVA 742
                 333333222222222.......111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (847 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1803  (0.100563); expected 358.6 (0.02)
Passed bias filter:                      659  (0.0367561); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.26s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 5403.41
//
Query:       KKY23933.1  [L=502]
Description: putative allantoate permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-18   67.4  21.2      1e-09   37.8   7.0    2.5  3  MFS_1     Major Facilitator Superfamily
    0.00041   19.7   9.0      0.009   15.3   0.7    2.8  2  MFS_4     Uncharacterised MFS-type transporter YbfB


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   4.5   2.3e-13   2.1e-09       1     121 [.      65     185 ..      65     201 .. 0.87
   2 !   37.8   7.0   1.1e-13     1e-09     155     353 .]     202     409 ..     191     409 .. 0.76
   3 ?   -2.4   0.0      0.19   1.7e+03     150     169 ..     424     443 ..     410     459 .. 0.55

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 2.3e-13
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlg 98 
                 l++++ l++l+  +lg++  l +++d +++  ++++l +++++g+++a  p  +  +rf   ++l   l++++   ++l ++ +++  l+v+r+l G++
  KKY23933.1  65 LCIGYHLMYLDKQTLGSSSILGIMDDAHLNSNQYNWLSSIFYFGYLIAEWPQNWALQRFPVAKWLAGNLIVWGGI-TILHIPcNNFGSLFVVRILLGVA 162
                 579999*************99999***********************************9888888888888888.67775458888************ PP

       MFS_1  99 agalfpagaaliadwfpkeergr 121
                 +++++pa +  ++  f+ +e++ 
  KKY23933.1 163 EAVIVPAFLLTMSMFFTYQEQSV 185
                 *******9999998888766665 PP

  == domain 2  score: 37.8 bits;  conditional E-value: 1.1e-13
       MFS_1 155 yilaivsllafvlfllllpeepperkrkspkeee...............kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevl 238
                 +i ++v+++++v++++ +p++p + +  + +e+                k+ +++++++     lkdp  w++++++ +  +++ ++ +++ +   + +
  KKY23933.1 202 VITGVVTIIFGVVVWIMFPDNPLQAQFLTIEERAqailrikenhsgieqKRFKKHQFIE----ALKDPKTWLFFLHAWSQEMANGTTNQYSLI--IQSF 294
                 799*********76666666666666665555559999999888665555555555555....8888889*9********9************..9*** PP

       MFS_1 239 glsglllaglllallalvgailallagrls.drlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasd.lappeeag 335
                 g++   +++ ll+ ++ ++a ++ll+++++ + + + r++l a++ l++++ +++l+ +++s+ ++l+  + i   +g+ ++ ++++a++ +a+  +  
  KKY23933.1 295 GFT-TAETT-LLGCVSGGTALVSLLTAAVIlHTTTNCRAWLSAFSYLFCIVSAVLLMTLPWSNKWGLVTGIWIRSPGGIPYSVVMVWAANcSAGHTKKT 391
                 ***.34444.37777777777766777666588888899999999999999999999999999999999999888444444555544444144668999 PP

       MFS_1 336 tasglfntagslggalgp 353
                 t+++l+ + ++lg +l+p
  KKY23933.1 392 TVIALYHIGYGLGNILSP 409
                 ***************998 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.19
       MFS_1 150 Wravfyilaivsllafvlfl 169
                 W+++ +++ i+ +l ++   
  KKY23933.1 424 WTVILVVASIFPALIVLYLR 443
                 44444444444444433323 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.7     1e-06     0.009      19      99 ..      87     167 ..      83     237 .. 0.88
   2 !    7.5   2.1   0.00025       2.2      66     137 ..     342     412 ..     290     463 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1e-06
       MFS_4  19 llaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvl 99 
                 ++ + +l+ +q  +l ++ y GYL+       al++ +    l + l++    ++     ++f  ++++R+l+Gva Av+ 
  KKY23933.1  87 IMDDAHLNSNQYNWLSSIFYFGYLIAEWPQNWALQRFPVAKWLAGNLIVWGGITILHIPCNNFGSLFVVRILLGVAEAVIV 167
                 7999*********************999887777666666669999999999*************************9874 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00025
       MFS_4  66 latvllllamaltes..faaflliRflaGvasAvvlvfgsslvlahaaaarrervgallfaGvGlGiavsgllv 137
                 +++++ll++  + ++  +++ + iR   G+   vv+v +++ +  h   +++ +v+al + G GlG ++s  l 
  KKY23933.1 342 IVSAVLLMTLPWSNKwgLVTGIWIRSPGGIPYSVVMVWAANCSAGH---TKKTTVIALYHIGYGLGNILSPQLF 412
                 3444555555555541134445689999999999999999999999...8999999999999999987776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       972  (0.0542138); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 3130.20
//
Query:       KKY23934.1  [L=430]
Description: putative salicylate variant [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-17   63.4   0.2      8e-17   61.5   0.2    1.9  1  FAD_binding_3   FAD binding domain
    7.7e-06   26.0   0.1    1.9e-05   24.8   0.1    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00044   19.2   0.0     0.0009   18.2   0.0    1.4  1  Trp_halogenase  Tryptophan halogenase
    0.00053   19.7   0.7    0.00053   19.7   0.7    2.2  3  DAO             FAD dependent oxidoreductase
     0.0013   18.0   0.1     0.0071   15.6   0.1    2.1  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0016   17.6   0.1     0.0016   17.6   0.1    1.9  3  FAD_binding_2   FAD binding domain
  ------ inclusion threshold ------
      0.016   14.3   0.1          2    7.4   0.1    2.1  2  Lycopene_cycl   Lycopene cyclase protein
      0.039   13.9   0.8       0.21   11.6   0.4    2.3  2  NAD_binding_9   FAD-NAD(P)-binding
      0.046   13.0   0.1      0.095   11.9   0.1    1.4  1  Thi4            Thi4 family
      0.092   11.4   0.1       0.17   10.6   0.1    1.5  1  HI0933_like     HI0933-like protein


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.2   4.5e-20     8e-17       2     347 ..       6     369 ..       5     371 .. 0.74

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 4.5e-20
                    EEEEEE--SHHHHHHHHHHHHTT.HHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE...CCCC..CEEEEEHH CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaG.vrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealyne...lsdt..pkaradle 91 
                     +V+I GaG aGl +a  L+++  ++v + e+ ++  + + +  l++  +++l++lG+++ + +e a +  +g  +  +    +++   ++ +d+ 
     KKY23934.1   6 LKVVIAGAGIAGLATAIALRQHPrIDVEIYEQATELREIGASIALSPNGLRTLDKLGIDNALDDEVAFRGPSGLPMIFRhwkTDEIvsVDRFTDVP 101
                    68******************984388999999888888899999*************998888887666555554444422123335545555555 PP

                    CHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEE CS
  FAD_binding_3  92 lesspervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagv 187
                          +++ +    l + L++h    g  v+ k+++ + + d +gvta + d +     + r + l+GaDG +S++rk+   + e + t   +++
     KKY23934.1 102 --VHRHQTARFHRAHLHQSLLQH--VPGELVHLKKKIMGAQVDADGVTAYFADGT-----EARGDILIGADGIKSKTRKAFVPDHELQWTG--STF 186
                    ..667778888899999999999..45577899999***************9985.....456799*************997665555444..666 PP

                    EEEEEEC-SCCCTTC.....CEEEEECCTTEE........EEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEEEEEEE CS
  FAD_binding_3 188 ldvlfdadlsdivep.....lvlilsaesrgv........mviPlentlerfyvqvearaekeersekfteeevkarlreivgektldveieevsa 270
                    +  +fda l +   +      ++ + ++  +         +v+ + +   ++  +  +++++ +++++ + e ++a+++  +   ++  e + + +
     KKY23934.1 187 MRSTFDASLVSHIPDlppdsTHWWGVSHGFFAsrlghgqyTVVGRCD-PADVNDVHATDPKDVGWNDEGNVELLRAIYKDWSPVVRALSEATPYVR 281
                    66666664443444445668777777776655555565554444444.333344445555556667777777777777776666666665554433 PP

                    E..EEEEEEESSSEET.TEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHH........HTTSS-GGGGHHHHHHHHHHHHHHHH CS
  FAD_binding_3 271 w..tvaqrvaekyrkg.rvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaav........lkGeAkeelLdtYeeerravaqavvd 347
                    +  + a    +++  g rv l+GDAaH+h  +++ G  +a+ Da+ L+  + +v        l+G A ++ L  Yee r+++ +++++
     KKY23934.1 282 LfpNYAGAPLKTWVFGsRVTLVGDAAHTHGGAHAAGGSLALDDAYALFLSISHVfpasstskLSGPAIRQALTLYEETRKPHTERLLK 369
                    32345677889****************************************9986666666689******************999875 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.1   1.1e-08   1.9e-05       1      30 [.      10      40 ..      10      59 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.1e-08
                   EE--SHHHHHHHHHHHCC.TEEEEEE-SSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gfdvlllekrdr 30
                   I GaG++Gl++A +L+++ ++dv+++e+++ 
     KKY23934.1 10 IAGAGIAGLATAIALRQHpRIDVEIYEQATE 40
                   67****************899******9876 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     5e-07    0.0009       1     114 [.       7     121 ..       7     141 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 5e-07
                     EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S.SS---SS-EE--THHHHTHHHHT--HHHHCHHCT-..EEE-EEEEESSSSCESEEEEESS CS
  Trp_halogenase   1 kivivGGGtaGwlaAaalakalkgklevtlvese.eigtvgvGeatipsirkllrlLgideeeflretea..tfKlgikFedWgkkgeryihsFg 92 
                     k+vi+G+G+aG  +A+al+++   +++v++ e++ e+  +g   a+ p+    l+ Lgid++ +  e+ +  +  l + F++W++ +   +  F 
      KKY23934.1   7 KVVIAGAGIAGLATAIALRQHP--RIDVEIYEQAtELREIGASIALSPNGLRTLDKLGIDNA-LDDEVAFrgPSGLPMIFRHWKTDEIVSVDRFT 98 
                     79****************9988..6899998865267778888899999999********87.6666665115566688******9999999999 PP

                     -..--EETTEEHHHHHHHHHHTT CS
  Trp_halogenase  93 a.igkqlegvalhhywlkararg 114
                        +++++++++h+++l+++  +
      KKY23934.1  99 DvPVHRHQTARFHRAHLHQSLLQ 121
                     85689999999999999776544 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.7   2.9e-07   0.00053       1      37 [.       7      47 ..       7      51 .. 0.88
   2 ?   -1.5   0.0      0.83   1.5e+03     259     271 ..     154     171 ..      83     252 .. 0.59
   3 ?   -1.6   0.1      0.89   1.6e+03      71      91 ..     356     375 ..     297     427 .. 0.46

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.9e-07
                EEEEECTSHHHHHHHHHHHHTT...EEEEESSSSTTS.SGG CS
         DAO  1 dvviiGGGiiGlstAyeLarrg...Vtllekgdiags.gaS 37
                +vvi G+Gi+Gl+tA +L +++   V ++e++ ++ + gaS
  KKY23934.1  7 KVVIAGAGIAGLATAIALRQHPridVEIYEQATELREiGAS 47
                59****************9998999*****99887766776 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.83
                 TTSEEEEEESSE.....E CS
         DAO 259 kdgrvlvGgtad.....e 271
                 + g +l+G+++      +
  KKY23934.1 154 ARGDILIGADGIksktrK 171
                 234455555554444331 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.89
                 HHHHHSSTTSEEEEEEEEEES CS
         DAO  71 leeelgididyrrtGllslaa 91 
                 +ee++ ++++ r   +++  +
  KKY23934.1 356 YEETRKPHTE-RLLKTVHASR 375
                 3332222221.1122222221 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   3.9e-06    0.0071       2      32 ..       7      38 ..       6      62 .. 0.87
   2 ?   -0.5   0.0      0.33   5.9e+02     202     244 ..     130     172 ..      91     191 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.9e-06
                 SEEEE--SHHHHHHHHHHHHH.TS-EEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqa.gakvtlvele 32
                 +vv+ G+G+AGla+a+ l+q+  ++v ++e+ 
   KKY23934.1  7 KVVIAGAGIAGLATAIALRQHpRIDVEIYEQA 38
                 79******************779999999643 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.33
                  ESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 202 lgtsvkeidgngeklevvledgeeidadlvvvavGvrpstell 244
                  l++++  ++ + + ++    dg+e   d ++ a G++ +t+ +
   KKY23934.1 130 LKKKIMGAQVDADGVTAYFADGTEARGDILIGADGIKSKTRKA 172
                  3344444444444557777777777788877777777776554 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1     9e-07    0.0016       2      35 ..       8      42 ..       7      69 .. 0.85
   2 ?   -3.6   0.0       2.5   4.4e+03     167     224 ..     127     148 ..     103     175 .. 0.51
   3 ?   -3.1   0.1       1.7     3e+03      22      47 ..     297     322 ..     296     324 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 9e-07
                   EEEE--SHHHHHHHHHHHHTTT.-EEEEESSSGGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGl.kvavvekeqefg 35
                   v++ G+G+AGLa A++++++ + +v + e++ e +
     KKY23934.1  8 VVIAGAGIAGLATAIALRQHPRiDVEIYEQATELR 42
                   9********************99****99998876 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.5
                    EEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG..........GSSSBSSGTT CS
  FAD_binding_2 167 LivedgrvtGavvenpesgrevrirakavvlatgGfgrallkellgaaaeaettnapa 224
                    L++ ++++ Ga v                                     a+ ++a  
     KKY23934.1 127 LVHLKKKIMGAQVD------------------------------------ADGVTAYF 148
                    33333344444444....................................33333333 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.7
                    TT-EEEEESSSGGGSGGGG--S-EE- CS
  FAD_binding_2  22 GlkvavvekeqefggatawsqGgida 47 
                    G +v++v  +  + g +++++G++++
     KKY23934.1 297 GSRVTLVGDAAHTHGGAHAAGGSLAL 322
                    67899999999999999999999875 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0011         2       2      33 ..       8      38 ..       7      47 .. 0.89
   2 ?    4.8   0.0    0.0067        12      60     145 ..      85     169 ..      64     192 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0011
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlieas 33
                   vv+ GaG Agl+ A  l +++p++ v + e +
     KKY23934.1  8 VVIAGAGIAGLATAIAL-RQHPRIDVEIYEQA 38
                   89***************.99****99987765 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0067
  Lycopene_cycl  60 hsWsgtivylddgkkillg.raYgrvsskrlkeellerlvengvklleakvesveeeeageslvvleggrkirarlvvdarglaslk 145
                    h   + iv +d +  + +   + +r ++++l++ ll++++ ++   l+ k+  ++ + +  ++++ ++g + r+ + + a g+ s++
     KKY23934.1  85 HWKTDEIVSVDRFTDVPVHrHQTARFHRAHLHQSLLQHVP-GELVHLKKKIMGAQVDAD-GVTAYFADGTEARGDILIGADGIKSKT 169
                    43345678888888887774467899**************.777778888888888877.899*******************77765 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   0.00012      0.21       1     151 [.       9     161 ..       9     165 .. 0.74
   2 ?   -3.0   0.0       3.5   6.2e+03      56      77 ..     193     214 ..     184     231 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtdqseelllNvpasemslftddp..........ptfaeWlrergaleeaeeld 86 
                    +i GaG++Gla++ +L ++     ++++ ++++++  ++  ++ + s++ l  +    +    dd+            f++W +++    ++++++
     KKY23934.1   9 VIAGAGIAGLATAIALRQH----PRIDVEIYEQATELREIGASIALSPNGLRTLDKLGIDNALDDEvafrgpsglpMIFRHWKTDEIV--SVDRFT 98 
                    699*************999....59*******98777677777777777787788888887777778888888996666667666652..345665 PP

  NAD_binding_9  87 pddfvpRalyGrYlrdlfe.ellarlpegvtvevhraevvdleeradgqavlladgaslaadaVvL 151
                    +   v R    r+ r+ ++ +ll+ +p   ++ ++++++   + +adg++   adg++ + d ++ 
     KKY23934.1  99 D-VPVHRHQTARFHRAHLHqSLLQHVPG--ELVHLKKKIMGAQVDADGVTAYFADGTEARGDILIG 161
                    5.45566666666665555055555564..789999999999999999999999999998887775 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.5
  NAD_binding_9  56 asemslftddpptfaeWlrerg 77 
                    as +s+++d pp+  +W+   +
     KKY23934.1 193 ASLVSHIPDLPPDSTHWWGVSH 214
                    6778888888888888887665 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   5.3e-05     0.095      19      50 ..       7      38 ..       3      45 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.3e-05
                EEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 19 DvvivGaGssGLtaayylakkpdlkvailers 50
                 vvi GaG +GL++a  l ++p + v i e+ 
  KKY23934.1  7 KVVIAGAGIAGLATAIALRQHPRIDVEIYEQA 38
                69**************************9985 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   9.3e-05      0.17       2      44 ..       7      53 ..       6     167 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.3e-05
                 SEEEE--SHHHHHHHHHH.HHTT--EEEE-SSSS...S-HHHHHCGG CS
  HI0933_like  2 dviviGgGaAGlmaAisa.akrgkrVlllekakk...lgrKilisGg 44
                 +v++ G+G AGl +Ai++ ++   +V ++e+a++   +g  i++s +
   KKY23934.1  7 KVVIAGAGIAGLATAIALrQHPRIDVEIYEQATElreIGASIALSPN 53
                 79****************5566789*****98651115566666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.51
# Mc/sec: 2554.33
//
Query:       KKY23935.1  [L=357]
Description: putative thermophilic desulfurizing enzyme family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.8e-10   39.2   0.1    1.7e-09   38.4   0.1    1.5  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    7.3e-07   29.3   0.0    1.5e-06   28.3   0.0    1.5  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    2.1e-05   24.6   0.0    3.4e-05   23.9   0.0    1.3  1  Pim            Pesticin immunity protein
    2.3e-05   24.7   0.3    4.1e-05   23.9   0.3    1.4  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.1   3.7e-13   1.7e-09      21     112 ..      43     133 ..      25     134 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 3.7e-13
                    HHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHHHS-HHHHHHHHHHHHTT CS
  Acyl-CoA_dh_N  21 phaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslvapailrfGteeqkrryLpklasg 112
                      a e d ++++p+e +k l+ +Gl+++  p eygG g ++ ++  v+ e+a+ad ++a llg h s   +     Gt++q +++L+++ +g
     KKY23935.1  43 LDAVERDSANQTPWEELKLLKGAGLVNLLGPREYGGGGETWKTSYRVTTEIAKADGSIAHLLGNHYSWF-WSSQILGTKQQAEKWLREFTEG 133
                    357778888899**************************99******************99999999888.566779***********99887 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   3.4e-10   1.5e-06      20      96 ..     149     223 ..     138     224 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 3.4e-10
                    EEEETT.EEEEEEEEEEEETTTT-SEEEEEEETS-------EEEEEEE..GGGEEE-----BSS-TTS-EEEEEEE. CS
  Acyl-CoA_dh_M  20 aaerdggeyvlnGeKiwitnaaiatlalvlartekpdrarglslflvprdapgvsvrrieeklGlrglptgelvfed 96 
                    +a+ dg + v nG K ++t++ i++++++ +   ++d a+++ +++vp+++pg++++  ++ +G+r +++g   +++
     KKY23935.1 149 VARDDGHDLVFNGDKFFSTGGVISDVTVLEGV-LGDD-AHTHVFAYVPTQQPGITFKGDWHVIGQRLTESGGCLIQN 223
                    47889999************************.6677.788889************77779****999888766665 PP

>> Pim  Pesticin immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   7.7e-09   3.4e-05      17      93 ..      45     122 ..      38     125 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 7.7e-09
         Pim  17 svaqgkdealakdilknlelntfrnslrpriygdqttlkqteyritekkagakktia.lvdkeqswvislkvleikkd 93 
                 +v + + + +  + lk l   ++ n l pr yg +    +t yr+t   a a++ ia l+ ++ sw +s ++l+ k++
  KKY23935.1  45 AVERDSANQTPWEELKLLKGAGLVNLLGPREYGGGGETWKTSYRVTTEIAKADGSIAhLLGNHYSWFWSSQILGTKQQ 122
                 566677777888889999999**************9999****************994578999**********9998 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.3   9.2e-09   4.1e-05       3      83 ..     258     342 ..     256     352 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 9.2e-09
                    HHHHHHHHHHHHHHHHHHHHHHHHC.....TTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHH CS
  Acyl-CoA_dh_2   3 iaavalGaAraalaefvelarervr.....assgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraea 83 
                    +a v lG+A +al+++++++r  +r       +++ +a++ ++    +++++++ AA+al++r+a+r+ al++a +    + ra++
     KKY23935.1 258 FASVHLGVAIGALEAAQDYTRSTTRawpygGDNKNLAAEEWYILEGYGHLQTSIWAAEALIHRTAERVSALIHAPRDG-LTSRARG 342
                    899******************8888889855566667888899999*********************88887776653.3333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 2189.36
//
Query:       KKY23936.1  [L=2130]
Description: putative alpha-glucan synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-17   62.1   0.9    2.2e-16   60.4   0.2    2.2  2  Alpha-amylase    Alpha amylase, catalytic domain
    1.4e-15   57.6   0.0    2.8e-15   56.7   0.0    1.4  1  Glyco_transf_5   Starch synthase catalytic domain
    6.7e-07   29.0   0.0    1.3e-06   28.0   0.0    1.4  1  Glycos_transf_1  Glycosyl transferases group 1
     0.0029   17.5   3.0     0.0029   17.5   3.0    2.1  2  FA_desaturase    Fatty acid desaturase
     0.0051   16.8   0.0      0.012   15.7   0.0    1.5  1  Glyco_transf_4   Glycosyltransferase Family 4
     0.0074   17.0   0.3      0.022   15.5   0.3    1.8  1  Big_5            Bacterial Ig-like domain


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.2   7.3e-20   2.2e-16       1     219 [.      98     348 ..      98     392 .. 0.75
   2 ?   -2.3   0.0      0.87   2.6e+03     122     164 ..    1855    1900 ..    1840    1904 .. 0.75

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 7.3e-20
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE..-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCC........... CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifk..spqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehew........... 83 
                    GD  G  + LdYl+++G+++i+l+       p    gY   d t +d ++G+ e + e i+++h +g++v++D     +sd               
     KKY23936.1  98 GDAAGFNDSLDYLQGMGIKGIYLAGTILlnLPWTADGYSPVDLTLLDAHYGDIEIWREVIQEVHRRGMYVVMDNTLATMSDLIGFeghlnettpfs 193
                    999********************9866555999********************************************9999888555555555554 PP

                    ..CHCCHHSTTSGGGCCC-E.....................................ESS-STTC-............TTTTCSCEE.CTTTTCEE CS
  Alpha-amylase  84 ..fkeslkkkgepkrdyyiwkegk...............................eekeppnnwks............lfdgsawey.dekaqeyy 133
                        +              wk+ +                                         s            + d +a+    +++    
     KKY23936.1 194 lqEYKV------------RWKNERryldfefgnnynetcdyprfwletgyrvdsdV--------TSqlvgcydsdfdqYGDTEAFGVfPDWQR--Q 267
                    432222............23333345555555566677777777777555444441........33444444444333455555554533333..4 PP

                    ESSS-TTS-BB-TTTCCCCCCCCC.CCCCCCTTT-SEEEETTCCCTTTCCCCHCCHCCHHHHHHHHHHHTCCGTT-EEEEE-TT-SC CS
  Alpha-amylase 134 lhlflkklpdLnteneevrkelkd.vvkfwlekgidGfRlDvvkhvskvealesngeflheftqalnetvasrkevmtvgEvssdas 219
                    l +f++ ++ L    ++vr ++k+  + + l  +idGfR D + +        +    + ++  +  + v +++++++ gE+ ++++
     KKY23936.1 268 LSKFASVQDRLREWVPSVRDKIKRhSCLMILMLDIDGFRYDKATQATV-----DAQAEMSQYYRDCARSV-GKDNFFIPGEITGGDT 348
                    9***********************999999***********9988877.....44455566666666565.7899999999998876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.87
                     SCEECTTTTCEEESSS-TTS-BB-TTTCC....CCCCCCCCCCCCCT CS
  Alpha-amylase  122 aweydekaqeyylhlflkklpdLntenee....vrkelkdvvkfwle 164 
                     + ++++k++  y + f +kl+ Ln +n+e    ++++l+++ k w+ 
     KKY23936.1 1855 DPNFTDKTG-VYFREFEEKLASLNADNSEtalcIETYLEKAEKKWFT 1900
                     555666665.69999************99777667777778787776 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0   9.3e-19   2.8e-15       2     214 ..    1166    1375 ..    1165    1377 .. 0.81

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 9.3e-19
  Glyco_transf_5    2 ilfvasEv..apl...aktGGLadvvgaLpkaLaklghdvrvilPrygaikeekkeleevaelskaaedeveve.v...ekvkvaklkkdgvd 85  
                      +l++++E+    +   +k GGL+ +++ + k L ++  d   ++P  g+++  + e e          +++ v+ +   ++v++  ++ ++++
      KKY23936.1 1166 VLIATMEYdiEDWgikIKIGGLGVMAQLMGKHLGHQ--DLIWVVPCIGEVDYPEVEGELA--------EPMSVTiLgnqYEVQIRYHRLRNIT 1248
                      7888888866344557*****************886..8999999999988865322222........3344443134578888888889*** PP

  Glyco_transf_5   86 vyfldnpeffdreg..lYgdkgedyednaerfalfsraalelleklgwkpdvihahDWhtalvpallkelykerglfkkiktvftiHNlayqg 176 
                      +++ld+p f ++++  +Y ++  d  d a  ++++++ ++ +++++    d+ h++D+h +l+p++l  +         i++++++HN ++qg
      KKY23936.1 1249 YVLLDAPVFRQQTKaePY-PARMDDLDSAIYYSAWNQCIALAIKRF-PNIDLYHINDYHGSLAPLYLLPQS-------SIPVCLSLHNAEFQG 1332
                      ********99755568**.4588889*******************4.369*****************9985.......3************** PP

  Glyco_transf_5  177 rfp......kdel.aalglpaedfekldglefygkvnflkagivy 214 
                       +p      k+el a+++l+ e     + ++f + +n+l+ag  y
      KKY23936.1 1333 LWPlrtateKEELaAIFNLDLELV--TKYVQFGDVFNLLHAGASY 1375
                      ***999998777767799996654..6788999999999999765 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   4.5e-10   1.3e-06      12     112 ..    1457    1559 ..    1448    1614 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 4.5e-10
                       TTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES....STTHHHHHHHHHHHCTTC.GGGEEECCHSSSHHHHHHCESEEEEE CS
  Glycos_transf_1   12 nekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaG...ngeeekelkklaeelelsd.nviflgevsredleellknadifvlp 99  
                       +++  + ++vgr + +Kgvdl+ ++f+++ ++ +pnv+l+ +G   +   +    kla+  el   +v+   e      + +++ a  +++p
       KKY23936.1 1457 DGNADLCVFVGRWSMQKGVDLIADVFPDILDR-HPNVQLICIGpviDLYGKFAALKLAKLMELYPkRVFSKPEF-TALPPYIFSGAEFALIP 1546
                       66777889***********************9.************94444444455555555555055555555.5788888999******* PP

                       ESSBSS-HHHHHH CS
  Glycos_transf_1  100 sisEgfGivllEA 112 
                       s+ E+fG+v++E 
       KKY23936.1 1547 SRDEPFGLVAVEF 1559
                       ***********96 PP

>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       1.5   4.5e+03     183     213 ..     873     899 ..     869     900 .. 0.78
   2 !   17.5   3.0   9.7e-07    0.0029      86     213 ..    1940    2072 ..    1922    2078 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.5
  FA_desaturase 183 veHyggdwgerqvetsasirsaswllnlltg 213
                    + H     g +++++s+++   s ++++lt+
     KKY23936.1 873 IMHR--APGADRFRYSTNWG--SSWSGWLTY 899
                    5563..47788889999999..******986 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 9.7e-07
  FA_desaturase   86 l.....srfeglfryllrlllgllvlgwllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglalllwlvplllllf 174 
                     l      ++ gl r++   l    v++++la+  ++++  ++++  + ++ ++   l++++ ++l++ ++w++++ ++   +    + + +++ 
     KKY23936.1 1940 LlgpdyVPPTGLKRWMQLRLKDWPVYSFFLAFGQVIAANSYQVTLLSGEVGQTASKLYTVASIYLIFSIIWWMTFRWFKAIF---SLSIPFFFY 2030
                     255566899********************************************************************99855...444444444 PP

  FA_desaturase  175 llalvl.nyveHyg...gdwgerqvetsasir.saswllnlltg 213 
                      la++l  ++ Hy      w + ++ + +s+  s++  + ++ +
     KKY23936.1 2031 GLAFILiGVAGHYTddtRGWIQNVATGFYSAAsSSG--SIFFAL 2072
                     444444499999998888999999999999985333..333333 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.9e-06     0.012      61     115 ..    1283    1337 ..    1223    1355 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.9e-06
  Glyco_transf_4   61 lrrlrrllkre.kpDvvHahspaalgaallalrrrlgiplVltvHglyekrllkar 115 
                       + ++ ++kr+ ++D+ H+++++  +a l  l + + ip+ l++H+ + ++l++ r
      KKY23936.1 1283 NQCIALAIKRFpNIDLYHINDYHGSLAPLYLLPQ-SSIPVCLSLHNAEFQGLWPLR 1337
                      234666788889***********99888777776.*************75444443 PP

>> Big_5  Bacterial Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.3   7.2e-06     0.022       4      62 ..     719     781 ..     716     809 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.2e-06
       Big_5   4 aPtvvstsPadgat.....gvavna....eitvtFseavdastvtaatvialsdsettavtgsydasg 62 
                 +P ++s+sP + a      g++  +    ei+++Fse++d ++vt++++++ s+++++ v++     g
  KKY23936.1 719 RPMITSFSPGHDARiqstvGIS--EsetvEIEIEFSEEMDCDSVTDSISLT-SRTDANSVPTV--NRG 781
                 6889999999995533322443..13345******************9997.56666666655..222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.17u 0.34s 00:00:01.51 Elapsed: 00:00:00.54
# Mc/sec: 11952.22
//
Query:       KKY23937.1  [L=324]
Description: putative alpha-ketoglutarate-dependent taurine dioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-41  141.2   0.0    6.4e-41  140.9   0.0    1.0  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.9   0.0   3.6e-45   6.4e-41       2     236 ..      60     301 ..      59     307 .. 0.88

  Alignments for each domain:
  == domain 1  score: 140.9 bits;  conditional E-value: 3.6e-45
        TauD   2 vkpltpkfgae..gvdlsdleslddelkeelrellaeygvvvfrgfpl...speqqlefarrfGplygtpgrgtntkygevld...vssvyesadian. 91 
                 + +l+p+ g+e  gv+l++   l++e  +el  + ae+g +vfr++ +     e+q+++a+ fGpl+++  ++++++++e ++      ++++  i+  
  KKY23937.1  60 INDLSPHCGTEllGVQLDE---LSSEGLDELALMCAERGCLVFRNQKFtdiGFEAQQRIAEHFGPLHKHGWMPHPKNGPEEFVivyD--SKDDLRIRKs 153
                 6799***************...89899*******************7767799******************************7431..3333333333 PP

        TauD  92 .layttllwHtDlsylesppgiqlLhcleapa.tGGetpfvDgraaynaLpeelpellegltavrvyyhyrggglrteqelpavdkhprtg..hpvvrt 186
                    ++  ++H D+s +++ppg++++++le p+  GG+t ++++++a+++L+++ +++legl av+++++ +  ++  ++ +++v ++p+t+  hpvv +
  KKY23937.1 154 wARKNPIQFHVDQSPEPQPPGATFFCMLESPPgVGGDTVISSTVRAFERLSPSFRKRLEGLWAVHSTQKPIA-RELRDNGDKSVVRKPITRvvHPVVTV 251
                 334444448*********************888***************************************.88888888888888876555****** PP

        TauD 187 hpvltgrkallvnppfatrieglgtpeskelldaleelledp.eftyrfqw 236
                 hpv t +kal+vn  ++ +i+g++++es+ +l++l++++++  +f++r+ +
  KKY23937.1 252 HPV-TKKKALFVNSSYTESIVGWDDDESDCILKFLFDHINRGhDFSCRVSL 301
                 **8.************************************95599988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2060.76
//
Query:       KKY23938.1  [L=332]
Description: putative dihydrodipicolinate synthetase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-33  114.0   0.0      2e-32  112.1   0.0    1.7  1  DHDPS     Dihydrodipicolinate synthetase family


Domain annotation for each model (and alignments):
>> DHDPS  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.0   1.1e-36     2e-32      17     283 ..      25     316 ..       9     323 .. 0.80

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 1.1e-36
                 SSB-HHHHHHHHHHHHHCT-SEEEESSCCCTGGGS-HHHHHHHHHHHHHHHTT....SSEEEEE---SSHHHHHHHHHCCCCCT-SEEEEE---SS--. CS
       DHDPS  17 gkldkealrklieflinkgvdglvvaGttGEsatlsteekeqlveiaveaakg....ripviagvGsnstseaiklakkaeeaGadgvlavtPYYnkp. 110
                   ld  a +k +++  ++g+  + v Gt+GE++ l ++e++ql+ +a+ea ++     +p+iag+G++st+e+++la++a +aGad v+a+ P Y+   
  KKY23938.1  25 EDLDLVAFKKHVQYTSKAGTIPV-VSGTAGEAPHLGHAERKQLLITAREALDEvgliDVPIIAGIGAPSTRESVELAHEASDAGADFVIAIAPGYYAGt 122
                 56889999999999999998775.679*****************999999997555579**********************************666531 PP

                 ...-HHHHHHHHHHHHHCHSS-EEEEE-HHHH.SHHHHHHHHHHHHT.STTEEEEEE-SS-CTHHHHHHCCCSTT..............SEEEES-GGG CS
       DHDPS 111 ...sqeglyqhfkaiieatdlpvilYnvpsrt.gadlspetvkrLae.lenivgvKeavgdleevikikkevgkd..............lviysGddel 190
                    +++ l+++f  i++a  lpv++Yn+p+ + g dl  +++  +a+  +n+ g+K +  ++ ++++i + v++               +++  G+ + 
  KKY23938.1 123 lmaEPASLKNFFVDIANASPLPVMMYNFPAVSgGIDLDSDVIISIAKeAPNVCGIKLTCANVGKLTRITAAVNHAsfpekyprkvntapFLVIDGFIDF 221
                 2226889*********9999**********98368***********99**********9999666666554432111111222233334999******* PP

                 HHHHHHTT-SEEEESCHHCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH...CCCCSCCHHHHHHHHCTTSSSBB.--TTS--S-HHHHHHHH CS
       DHDPS 191 llsalslGadGvisvtsniagermrqlikalkeGdlaeaaelnekllpliki...lfaepnvilvktalellGlvveatlrkPltpleeeekeele 283
                 ll+ +  G  G+i+  +nia++   +l ++  +   + a +  + +++++     ++ +  + ++k+ l+++    +++ r+Pl+p++ e+ ++++
  KKY23938.1 222 LLPSMASGSSGAITGLANIAPKTCVKLWQYCSAEPSDVAYKDAQAIQNIVSNadgVALKIGIPGMKMLLYRIFGY-SPYPRRPLLPMSSEKGDAVM 316
                 *********************************888888888888888875511145555555678888766444.4559*********9988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.51
# Mc/sec: 1952.11
//
Query:       KKY23939.1  [L=421]
Description: putative allantoate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-14   53.7  23.0    2.2e-10   40.0  15.8    2.5  3  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.3   9.9e-09   0.00018       1      59 [.      76     134 ..      76     135 .. 0.96
   2 !   40.0  15.8   1.2e-14   2.2e-10     142     353 .]     128     350 ..     127     350 .. 0.77
   3 ?   -2.4   0.0     0.095   1.7e+03     154     166 ..     368     380 ..     360     399 .. 0.50

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 9.9e-09
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrf 59 
                 l+++a ls+l+ +++++a+   l++dl++s++++++  ++ ++g ++++ p ++l  ++
  KKY23939.1  76 LFVCATLSGLDKTAISAAAIYDLKTDLNLSGQQYSWCGSAPFFGGLAFMGPSAYLLKNY 134
                 699****************99*********************************98776 PP

  == domain 2  score: 40.0 bits;  conditional E-value: 1.2e-14
       MFS_1 142 glla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeee..........kgtgpaplvp...awkallkdpvlwillialllfffgfsgl 226
                 ++l+  + gW  +f+ +++++++++ + +++lp +p + ++ +++++              +++p ++   + +all     w++++a++    + +g 
  KKY23939.1 128 AYLLkNYPGWKIIFLSIGAFTIIWAGITYWFLPNNPLDTPWLTSRQKFmliqrksgdnT-GVESPSFKshqVVEALLDV-KTWLIWFAIIALQ-VPNGG 223
                 567767889***********************************999999999755531.2222222234333333333.3595555555554.66665 PP

       MFS_1 227 ltllplylqevlglsglllaglllallalvgailallagrlsdrlgr.rrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllal 324
                 lt++ +++ + lg++  ++++ll + +++++  +++ +++l+  + r r++l+ a +ll l+ ++l+++ + s+    l++l+++ + ++ +++++  +
  KKY23939.1 224 LTTFNTLIISGLGFD-SVQTSLLAMPPGAMSTLSGIGLSYLASTTRRyRTPLVAASILLPLLGAILCYTLPRSNLGGQLVGLYILYTYWAPYVTLVSIY 321
                 55555556*******.7999999999999999999*******77666255555555555555566666666689999999******************* PP

       MFS_1 325 asdlappeeagtasglfntagslggalgp 353
                  ++ a+ ++  +++++f + ++ g ++gp
  KKY23939.1 322 QANIAGHSKKLFLYSWFYVSWATGNIIGP 350
                 *****999999*****************8 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.095
       MFS_1 154 fyilaivsllafv 166
                 ++++ +v++++++
  KKY23939.1 368 MIVCYVVAIICIM 380
                 2222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.57
# Mc/sec: 2240.88
//
Query:       KKY23940.1  [L=554]
Description: hypothetical protein UCRPC4_g02753 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.52
# Mc/sec: 3182.57
//
Query:       KKY23941.1  [L=543]
Description: putative serine palmitoyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-56  192.1   0.0    2.1e-56  191.7   0.0    1.1  1  Aminotran_1_2    Aminotransferase class I and II
     0.0014   17.7   0.0      0.002   17.1   0.0    1.2  1  Aminotran_5      Aminotransferase class-V
     0.0093   15.3   0.0      0.013   14.8   0.0    1.2  1  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.7   0.0   3.5e-60   2.1e-56       2     361 ..     104     461 ..     103     462 .. 0.93

  Alignments for each domain:
  == domain 1  score: 191.7 bits;  conditional E-value: 3.5e-60
                    EEEESSSSSTTSTTSS.HHHHHHHHHHHH..HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT- CS
  Aminotran_1_2   2 dvinLgsneylgdsgk.ptlpevakaeke..galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgd 94 
                    + +n++s +ylg +++  ++ + ++   +  g++  g+++  g++d++ e e+ +a+f+g        +e+a+++++G+  +++ +  l    +gd
     KKY23941.1 104 ETLNMSSYNYLGFAQSeGPCADQVEDVVKkyGLSTVGSRADAGTSDLAVECEKLVADFVG--------KEDALIFSMGFVTNASGFSCLVG--KGD 189
                    578**************9999999999999******************************........999***************99998..*** PP

                    EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTE.......TEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEE CS
  Aminotran_1_2  95 eilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnk.......ktkvilvesphNPtGtvatleeleklldlakkynll 183
                     i+++++++as+  ++rlsg+ +  ++       h+d+e+le +l++  ++ +       k+ +++ve+ +++ Gt+++l+ +  l   +kky++ 
     KKY23941.1 190 LIISDELNHASIRFGARLSGAMIEAFK-------HNDMEDLESKLRKVISQGQprthrpwKKILVAVEGLYSMEGTMCNLPGIIRL---KKKYKFN 275
                    ***************************.......***************9999*********************************...******* PP

                    EEEEETTTTCBSSSS.HTHHH..HGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS.....SHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 184 lfvDeaYagfvfgsl.davat..ranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls.....ssllqaavaaalsdallkq 271
                    lfvDea++++++g++ +   +  ++++++   ++++g+l K+fG+ G   Gyi++n+ +++ +r   ++ l+     +++lq++ aa  + + + +
     KKY23941.1 276 LFVDEAHSIGALGPKgK--GVcdYFGIDTSEVDILMGTLTKSFGANG---GYIAANKSIIDKIRVTNAATLFaesptPAVLQQIMAALRNITGELN 366
                    *************8742..2246999999999***************...**********************966666666666666666666555 PP

                    H.HHHHHHHHHHHHHHHHHHHHHHSTEEEECCS.CSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTS...TTEEEEEC.TTS-HHHHHHHHH CS
  Aminotran_1_2 272 s.eleemrqrlqkrrkelrdeLaelglkvlasq.sgmflltdlsaetakelskkLleevgvyvtpgtsftv...pgrlRitv.Aglteeeleelve 361
                        ee+ qrl+ ++++lr +L++lg++v++ + s ++++ +++++++ ++s ++l++ ++ v+ + ++ +   ++r R++v +++++++l++l+ 
     KKY23941.1 367 PgMGEERLQRLAFNSRYLRLGLKRLGFIVYGHDdSPIIPVLLYNPAKMPAFSHEMLKR-KISVVIVAYPATpliSSRARFCVsSAHNKDDLDRLLA 461
                    599****************************999************************.777777778888888*******************986 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.4e-07     0.002      41     182 ..     147     286 ..     126     320 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.4e-07
                  HHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH-.. CS
  Aminotran_5  41 atkaveearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekll.. 136
                  +++   e+++ va++++ e+   +if  G    ++    +l   + +gd i+  e++h + +      a+  ga ++ ++ ++   l+ ++l+k +  
   KKY23941.1 147 TSDLAVECEKLVADFVGKED--ALIFSMGFV-TNASGFSCL---VGKGDLIISDELNHASIR----FGARLSGAMIEAFKHNDMEDLE-SKLRKVIsq 233
                  56777899999999999996..889977654.344444555...9***************99....4445569999999999999998.677777766 PP

                  .......-TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTT CS
  Aminotran_5 137 .......nektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavgh 182
                           k  lva+    ++ Gt+  ++ i++l kk++  ++vD a ++g 
   KKY23941.1 234 gqprthrPWKKILVAVEGLYSMEGTMCNLPGIIRLKKKYKFNLFVDEAHSIGA 286
                  6444331234459************************************9986 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.1e-06     0.013      29     213 ..     146     328 ..     131     446 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.1e-06
                      T--HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S- CS
  Beta_elim_lyase  29 gedktvnrLedavaelfgkeaalfvpqGtaAnsillkillqrgeevivtepahihfdetgaiaelagvklrdlknkeaGkmdlekleaaikevg 122
                      g++    + e+ va+ +gke al +  G   n+  ++ l+ +g+ +i +e +h   +     a l+g++   +k+++  +++  kl+++i + g
       KKY23941.1 146 GTSDLAVECEKLVADFVGKEDALIFSMGFVTNASGFSCLVGKGDLIISDELNHASIR---FGARLSGAMIEAFKHNDMEDLE-SKLRKVISQ-G 234
                      555666778899*************************************99998765...4456899999999999866666.589999999.5 PP

                      T...TS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHH....TTSSEEEEESSSTT--SS-EEEE CS
  Beta_elim_lyase 123 a...heekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemf....syvDsvtmslkKdllanvGgvla 209
                      +   h++  k+++      ++ G+   + +l  +  + kky+ +l++D A  + a    g  v ++f    s vD+++  l+K  +an Gg +a
       KKY23941.1 235 QprtHRPWKKILVAVEGLYSMEGT---MCNLPGIIRLKKKYKFNLFVDEAHSIGALGPKGKGVCDYFgidtSEVDILMGTLTKSFGAN-GGYIA 324
                      559999999988888888887886...567788899999*****************99999999999999899**************7.88999 PP

                      E-HH CS
  Beta_elim_lyase 210 frdd 213
                       +++
       KKY23941.1 325 ANKS 328
                      8887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 3259.89
//
Query:       KKY23942.1  [L=251]
Description: putative triosephosphate isomerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-89  299.8   0.2    1.4e-89  299.6   0.2    1.0  1  TIM       Triosephosphate isomerase


Domain annotation for each model (and alignments):
>> TIM  Triosephosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.6   0.2   8.1e-94   1.4e-89       2     243 .]       6     245 ..       5     245 .. 0.98

  Alignments for each domain:
  == domain 1  score: 299.6 bits;  conditional E-value: 8.1e-94
                 EEEEE-TBTS-HHHHHHHHHHHHHHCHGCTSEEEEE--GGGHHHHHHHHTTSSECEEES--BSSSSBS-TT--BHHHHHHTT-SEEEES-HHHHHHST- CS
         TIM   2 liagNwKmnktleeakellkklkaklkeekvevviappflylekvkklleesklklgaqnvsaeksGafTGevsaemlkdlgvkyviiGHsErrqlfkE 100
                 +++gN+Kmn++++ +k++++++++++++ + evviapp+lyl  +++++  ++++++aqnv  + +GafTGe+s+e+lkd g++++++GHsErr+l++E
  KKY23942.1   6 FVGGNFKMNGSIDGIKKIVHNIASSETDPNTEVVIAPPALYLLLTREHAP-KNIEVAAQNVFDKPNGAFTGEISVEQLKDSGITWTLLGHSERRTLLNE 103
                 799****************************************9988885.9*********************************************** PP

                 -HHHHHHHHHHHHHTT-EEEEEE---HHHHHTT.HHHHHHHHHHHHTTTS-CCCGGCEEEEE--GGGSSSS----HHHHHHHHHHHHHHHHHHSTHHHH CS
         TIM 101 tdelvakKvkaalksglkpilCvGEtleereagkteevvkeqlkeilkkldeealknvviAYePvWAiGtgktatpeqaqevhaairkelaekvskeva 199
                 +de+va K+++alk g+ +ilC+GE+le+reagkt evv++ql+++++ ++e++++++viAYeP+WAiGtgk+at+eqaqevhaair++l +++s  va
  KKY23942.1 104 SDEFVASKTASALKGGIGVILCCGESLEQREAGKTVEVVQHQLNAVANVIGEKDWEKIVIAYEPIWAIGTGKVATTEQAQEVHAAIREWLGKTISPAVA 202
                 *************************************************************************************************** PP

                 TTSEEEEESS--TTTHHHHHTSTT--EEEESGGGCSHHHHHHHH CS
         TIM 200 ekirilYGGsvnkenakellkqkdidGlLvGgaslkaesFlkii 243
                 +++ri+YGGsv+++n+ +l k+kdidG+LvGgaslk+  F++ii
  KKY23942.1 203 DNTRIIYGGSVSEKNCVDLAKEKDIDGFLVGGASLKPA-FVDII 245
                 ************************************88.*9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 1574.14
//
Query:       KKY23943.1  [L=371]
Description: putative u1 small nuclear ribonucleoprotein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.7e-22   78.4   1.5    8.9e-22   77.6   1.5    1.5  1  U1snRNP70_N  U1 small nuclear ribonucleoprotein of 70kDa MW N
    7.7e-16   57.7   0.0    1.2e-15   57.1   0.0    1.3  1  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
    6.9e-05   22.9   0.0    0.00012   22.1   0.0    1.3  1  RRM_7        RNA recognition motif


Domain annotation for each model (and alignments):
>> U1snRNP70_N  U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   1.5   1.5e-25   8.9e-22       1      93 []       3      96 ..       3      96 .. 0.91

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 1.5e-25
  U1snRNP70_N  1 skLPpnLlkLFaprpplpylppldydpekrkt.kkkitGvaaflselkedeeeqeppektetkeekkererkekkekkeekleeal.eeydPkeD 93
                 +kLPp Ll+LFaprppl+y+pp d dpe +   +++i G+a+fl++l+e++ ++e+++ te++ ++++r r ek++k ++ +  ++ +eydP++D
   KKY23943.1  3 DKLPPPLLALFAPRPPLRYVPPQDADPEIKGIkQSTIGGLANFLPALEEYKATDEYHP-TESWLQRRDRVRWEKQQKLQKIASGEVtDEYDPNQD 96
                 69**************************77776789************9988888888.*****************9999888776156****98 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0     2e-19   1.2e-15       1      69 [.     107     180 ..     107     181 .. 0.96

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 2e-19
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.....TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.....etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 lfV+ L +dv+e +L++ F+ fGpi++i++v++      +++++g+af+ +e + d+++A ++ +g  +++r++
  KKY23943.1 107 LFVSRLGYDVKEPDLEREFGRFGPIERIRIVKNpneknPKKTHRGYAFIVYEREKDMKAAYKETDGIRIKDRRV 180
                 8*********************************98888899****************************9986 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0     2e-08   0.00012       4      66 ..     107     166 ..     105     178 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2e-08
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaL 66 
                 +Fv  l  D++e +l++ f++fg++     +  +++++++  +k+++gy+f+v+e+ek +ka 
  KKY23943.1 107 LFVSRLGYDVKEPDLEREFGRFGPIE--RIRIVKNPNEKN-PKKTHRGYAFIVYEREKDMKAA 166
                 699999*****************974..444444444333.456789**********998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2558.89
//
Query:       KKY23944.1  [L=477]
Description: putative cell cycle control protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.5e-33  112.2   1.0    1.5e-32  111.4   1.0    1.4  1  Prp19         Prp19/Pso4-like
    4.9e-14   52.4   0.2    2.5e-07   30.9   0.0    5.3  6  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    1.2e-13   51.2   5.7    0.00011   22.9   0.0    5.9  6  WD40          WD domain, G-beta repeat
    2.3e-06   27.6   0.0       0.05   13.5   0.0    3.2  3  eIF2A         Eukaryotic translation initiation factor eIF2A
    0.00018   20.2   0.2     0.0038   15.8   0.1    2.4  3  Cytochrom_D1  Cytochrome D1 heme domain
     0.0023   18.3   0.7     0.0048   17.3   0.1    1.8  2  V_ATPase_I_N  V-type ATPase subunit I, N-terminal domain
  ------ inclusion threshold ------
      0.038   12.3   0.0      0.059   11.7   0.0    1.2  1  Frtz          WD repeat-containing and planar cell polarity e
      0.076   12.7   0.1       0.43   10.3   0.1    2.3  2  Hira          TUP1-like enhancer of split
       0.16   11.5   0.0         11    5.5   0.0    2.7  3  HPS3_N        Hermansky-Pudlak syndrome 3
       0.21   11.4   0.0       0.41   10.5   0.0    1.4  1  zf-Nse        Zinc-finger of the MIZ type in Nse subunit


Domain annotation for each model (and alignments):
>> Prp19  Prp19/Pso4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4   1.0   8.2e-36   1.5e-32       2      67 ..      66     131 ..      65     132 .. 0.97

  Alignments for each domain:
  == domain 1  score: 111.4 bits;  conditional E-value: 8.2e-36
                 SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
       Prp19   2 atSiPslLstlqnEWDalmletfelrkqleqtrqeLsqaLYqnDAAvrViArllkerdearealae 67 
                  tSiPslL  +q+EWDa +let++l+++l+qtrqeLs+aLYq+DAAvrViArl++erdear+al++
  KKY23944.1  66 LTSIPSLLGIFQEEWDAFALETYTLKQNLAQTRQELSTALYQHDAAVRVIARLTRERDEARDALSK 131
                 69**************************************************************97 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.12   2.2e+02      54      85 ..     216     246 ..     197     281 .. 0.66
   2 ?    5.7   0.0      0.01        19      30      77 ..     274     319 ..     255     324 .. 0.76
   3 !   30.9   0.0   1.4e-10   2.5e-07       5      87 ..     290     368 ..     286     373 .. 0.88
   4 !   10.7   0.1   0.00027      0.48      41      90 ..     365     413 ..     362     415 .. 0.85
   5 !    7.0   0.0    0.0039         7      36      78 ..     402     445 ..     399     457 .. 0.73
   6 ?   -0.5   0.0      0.87   1.6e+03      42      66 ..     450     474 ..     441     476 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  ANAPC4_WD40  54 avaysdgevrlldaesgkvvhslsvksekavt 85 
                   v+ sdg   +++ ++++v+++l+ ++ + +t
   KKY23944.1 216 LVGGSDGIAGIYSLSQKRVLRALKGGNGS-IT 246
                  56666777777777766666666655553.33 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.01
  ANAPC4_WD40  30 wtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsls 77 
                   ++  +++ +  +sLa +p+g + a +  d +  l+d ++ ++++++ 
   KKY23944.1 274 ASF--EAHAGVATSLAVHPSGDIVASVGVDKSYILYDLSTSQILRQVY 319
                  333..67778889******************************99875 PP

  == domain 3  score: 30.9 bits;  conditional E-value: 1.4e-10
  ANAPC4_WD40   5 ptmDLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                  p+ D++A +  d++ +++ l+  ++       ++ + + ++++pdg+lLa + +dg+++++d++sg  + ++++++    + l
   KKY23944.1 290 PSGDIVASVGVDKSYILYDLSTSQILRQ--VYTGCSLSTVRFHPDGHLLAAGGADGNIKIFDVKSGSSMAEFECSNP--LQAL 368
                  7789999999999999999999998887..7999****************************************988..4555 PP

  == domain 4  score: 10.7 bits;  conditional E-value: 0.00027
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdg.evrlldaesgkvvhslsvksekavtclgWg 90 
                   ++L ++++g+ La +++   +v++ d  +  vvh+l+ + +  v ++ W 
   KKY23944.1 365 LQALFFSENGTWLAAVTQGAsTVSIWDLRKSAVVHTLNSGGK--VDTIAWD 413
                  578999*******877765449***************99977..9999997 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.0039
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdg.evrlldaesgkvvhslsv 78 
                  +++++v  +aW   g++La a   g +v+ ++  s+   + l++
   KKY23944.1 402 NSGGKVDTIAWDYTGQFLAAAGPGGlTVHQYSKASKGWSEPLQI 445
                  6899***************9987776677666666655555555 PP

  == domain 6  score: -0.5 bits;  conditional E-value: 0.87
  ANAPC4_WD40  42 rsLaWkpdgklLavaysdgevrlld 66 
                  ++++W+ + k L+ +  +g +++l 
   KKY23944.1 450 SAVQWSTSAKSLVAVNTEGVISVLT 474
                  6789**9999999999999998876 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.6   1.1e+03      13      33 ..     205     223 ..     196     228 .. 0.73
   2 ?   -0.6   0.0       1.6   2.8e+03      11      38 .]     243     268 ..     232     268 .. 0.61
   3 !   15.1   0.0   1.8e-05     0.033       2      33 ..     271     303 ..     270     308 .. 0.86
   4 !   22.9   0.0   6.1e-08   0.00011       6      38 .]     318     349 ..     313     349 .. 0.86
   5 !    7.1   0.0    0.0058        10       9      38 .]     361     391 ..     353     391 .. 0.76
   6 ?    1.7   0.1       0.3   5.4e+02      12      29 ..     403     423 ..     395     430 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.6
                 EEEEEEETTSSEEEEEETTSE CS
        WD40  13 vtslafspdgawlasGsdDgt 33 
                 v +l+ s d+a++  Gs Dg 
  KKY23944.1 205 VLALDASGDNALV-GGS-DGI 223
                 7788888888885.556.997 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.6
                 SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriWd 38 
                 +s+t+  +  +++ +a+ s  g+v+++d
  KKY23944.1 243 GSITDGVWAGSNPVIAT-S-TGKVKVFD 268
                 55665547777777764.6.78888876 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 1.8e-05
                 EEEEEEESSSSE.EEEEEETTSSEEEEEETTSE CS
        WD40   2 qclrtltGHssv.tslafspdgawlasGsdDgt 33 
                 q + ++++H +v tsla++p+g+ +as + D++
  KKY23944.1 271 QETASFEAHAGVaTSLAVHPSGDIVASVGVDKS 303
                 66789****9999************99888987 PP

  == domain 4  score: 22.9 bits;  conditional E-value: 6.1e-08
                 EEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGHssvtslafspdgawlasGsdDgtvriWd 38 
                 ++tG  s + ++f+pdg++la+G+ Dg+++i+d
  KKY23944.1 318 VYTGC-SLSTVRFHPDGHLLAAGGADGNIKIFD 349
                 46666.678889*******************98 PP

  == domain 5  score: 7.1 bits;  conditional E-value: 0.0058
                 SSSSEEEEEEETTSSEEEEE..ETTSEEEEEE CS
        WD40   9 GHssvtslafspdgawlasG..sdDgtvriWd 38 
                   ++  +l fs +g+wla+   +   tv iWd
  KKY23944.1 361 CSNPLQALFFSENGTWLAAVtqG-ASTVSIWD 391
                 455677888********976556.99999998 PP

  == domain 6  score: 1.7 bits;  conditional E-value: 0.3
                 S...EEEEEEETTSSEEEEEE CS
        WD40  12 s...vtslafspdgawlasGs 29 
                 s   v  +a++  g++la+++
  KKY23944.1 403 SggkVDTIAWDYTGQFLAAAG 423
                 234488999********9764 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.36   6.4e+02     124     159 ..     261     296 ..     257     304 .. 0.89
   2 !   13.5   0.0   2.8e-05      0.05      85     161 ..     304     380 ..     294     388 .. 0.75
   3 !   11.0   0.0   0.00016      0.29      82     161 ..     384     464 ..     363     472 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.36
                 S-EEEEEETTTTEEEEEEE-TT--EEEE-TTSSEEE CS
       eIF2A 124 aGeleiwdvkkkkkiakaeaanatlvewspdgryvl 159
                  G+++++d ++ +   +a+a  at++  +p+g+ v+
  KKY23944.1 261 TGKVKVFDGQQETASFEAHAGVATSLAVHPSGDIVA 296
                 599*******999999999*********99999876 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.8e-05
                 EEEEECSCEEEEE..EEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--EEE.E-TTSSEEEEE CS
       eIF2A  85 vslfdlkvkvisk..leeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanatlve.wspdgryvlTa 161
                   l+dl  ++i +  +   +  t+ f+p g+l++ +G     G+++i+dvk+ +++a++e++n  +   +s +g++++  
  KKY23944.1 304 YILYDLSTSQILRqvYTGCSLSTVRFHPDGHLLAAGG---ADGNIKIFDVKSGSSMAEFECSNPLQALfFSENGTWLAAV 380
                 5677776555543124556789***********9988...579******************9987654156666666544 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00016
                 SCEEEEEECS.CEEEEEEEE.ES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE.-TT--EEEE-TTSSEEEEE CS
       eIF2A  82 pakvslfdlk.vkvisklee.qkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakae.aanatlvewspdgryvlTa 161
                  ++vs++dl+   v+++l++  k  ti ++++g++++ aG g l  ++  + + +k   + ++ a  a+ v+ws++ + ++  
  KKY23944.1 384 ASTVSIWDLRkSAVVHTLNSgGKVDTIAWDYTGQFLAAAGPGGL--TVHQYSKASKGWSEPLQiAVPASAVQWSTSAKSLVAV 464
                 35899***96478889998725789***************9999..7777777766555554415567888888887776655 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.6   2.8e+03      47      79 ..     212     244 ..     198     246 .. 0.81
   2 !   15.8   0.1   2.1e-06    0.0038       9     108 ..     256     352 ..     253     363 .. 0.89
   3 !    5.3   0.0    0.0034       6.1      13      94 ..     341     422 ..     340     433 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.6
                   SSEEEEEETTSEEEEEESSSSSEEEEEE-SSEE CS
  Cytochrom_D1  47 gRyvyvigRDgkvtliDLwakeivaevkiGlna 79 
                   g  ++v g Dg   ++ L +k++++ +k G  +
    KKY23944.1 212 GDNALVGGSDGIAGIYSLSQKRVLRALKGGNGS 244
                   556788899999999999999999999988765 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.1e-06
                   EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE-SSEEEEEEE--TTSEEEEEEEETTEEEEEE CS
  Cytochrom_D1   9 vverdagkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaevkiGlnarsvavSqddryvivgnYlPgqlvild 105
                   v+   +gkv++ dg++  ++a +e++  + +s    + g  v  +g D    l+DL + +i+++v  G     v    d++++++g    g+++i+d
    KKY23944.1 256 VIATSTGKVKVFDGQQ--ETASFEAHAGVATSLAVHPSGDIVASVGVDKSYILYDLSTSQILRQVYTGCSLSTVRFHPDGHLLAAGG-ADGNIKIFD 349
                   788899********75..568899999999999999999*******************************************99997.579999999 PP

                   TTT CS
  Cytochrom_D1 106 aet 108
                    + 
    KKY23944.1 350 VKS 352
                   776 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0034
                   GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTS.EEEEEESSSSSEEEEEE-SSEEEEEEE--TTSEEEEE CS
  Cytochrom_D1  13 dagkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDg.kvtliDLwakeivaevkiGlnarsvavSqddryvivg 94 
                   ++g++++ d +s +++a +e    l +   f+++g ++  ++  + +v++ DL +  +v++++ G+    +a  + +++++++
    KKY23944.1 341 ADGNIKIFDVKSGSSMAEFECSNPLQA-LFFSENGTWLAAVTQGAsTVSIWDLRKSAVVHTLNSGGKVDTIAWDYTGQFLAAA 422
                   6899******************99975.67888899988877765278999*********************99999998875 PP

>> V_ATPase_I_N  V-type ATPase subunit I, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   2.7e-06    0.0048      42      86 ..      89     135 ..      64     136 .. 0.81
   2 ?   -3.0   0.1       5.8     1e+04      73      84 ..     161     172 ..     152     173 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.7e-06
                   HHHHHHTT.SSEEEEEESSSS.EEEEEEEECCCHHHHHHHHHCCT-- CS
  V_ATPase_I_N  42 aLreaLed.Ryalateavgkn.rvavvvvlrgeldaaraaLsrvrlg 86 
                   +L+++L++ R +l t  +++   v v++ l +e+d+ar aLs+v +g
    KKY23944.1  89 TLKQNLAQtRQELSTALYQHDaAVRVIARLTRERDEARDALSKVSVG 135
                   688888543999999998876157799*****************987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.8
                   HHHHHHHHHCCT CS
  V_ATPase_I_N  73 ldaaraaLsrvr 84 
                   lda + aLs++r
    KKY23944.1 161 LDATQEALSKTR 172
                   788888999876 PP

>> Frtz  WD repeat-containing and planar cell polarity effector protein Fritz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.3e-05     0.059     264     328 ..     285     350 ..     275     365 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.3e-05
        Frtz 264 slafnpdedkLllGceDssviLydee.rkitklvkaevvPsliswhpdsaillvasergelqifDl 328
                 sla+ p+ d +     D+s iLyd +  +i + v +    s++++hpd+ +l  + + g+++ifD+
  KKY23944.1 285 SLAVHPSGDIVASVGVDKSYILYDLStSQILRQVYTGCSLSTVRFHPDGHLLAAGGADGNIKIFDV 350
                 6677788887777778********7526899999*******************************8 PP

>> Hira  TUP1-like enhancer of split
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.3   4.2e+03      27      46 ..     258     277 ..     254     288 .. 0.73
   2 ?   10.3   0.1   0.00024      0.43      13      46 ..     366     400 ..     356     407 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.3
        Hira  27 vtsvgllyvWnvkkkkvllp 46 
                  ts+g + v++ +++++ ++
  KKY23944.1 258 ATSTGKVKVFDGQQETASFE 277
                 57788888888877777774 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00024
        Hira  13 pasfLessgsyLlavtsvg.llyvWnvkkkkvllp 46 
                 +a f++ +g++L+avt+ + ++++W+++k +v+++
  KKY23944.1 366 QALFFSENGTWLAAVTQGAsTVSIWDLRKSAVVHT 400
                 567888899*******965279********99996 PP

>> HPS3_N  Hermansky-Pudlak syndrome 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.069   1.2e+02      31      81 ..     256     303 ..     245     320 .. 0.76
   2 ?    2.4   0.0     0.054        97      26      76 ..     330     380 ..     311     386 .. 0.76
   3 ?    5.5   0.0    0.0059        11      21      75 ..     366     421 ..     357     422 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.069
      HPS3_N  31 lvatesgcvevydleeeeckvlcrfstvdkvlk.iaysesGdyvatlEeknk 81 
                  +at++g+v v+d ++e    + +f++   v + +a   sGd va++  +++
  KKY23944.1 256 VIATSTGKVKVFDGQQE----TASFEAHAGVATsLAVHPSGDIVASVGVDKS 303
                 699*********97633....4457776666544999999999999876665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.054
      HPS3_N  26 agdk.Llvatesg.cvevydleeeeckvlcrfstvdkvlkiaysesGdyvatl 76 
                 ++d  Ll a   +  + ++d++ ++++ + +f++ +  +++ +se+G ++a++
  KKY23944.1 330 HPDGhLLAAGGADgNIKIFDVK-SGSS-MAEFECSNPLQALFFSENGTWLAAV 380
                 444425555444425*****97.4444.68*******************9986 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0059
      HPS3_N  21 tavcaag.dkLlvatesgc..vevydleeeeckvlcrfstvdkvlkiaysesGdyvat 75 
                 +a+++++    l a+++g   v ++dl+  ++ v++++++ +kv +ia + +G+++a+
  KKY23944.1 366 QALFFSEnGTWLAAVTQGAstVSIWDLR--KSAVVHTLNSGGKVDTIAWDYTGQFLAA 421
                 555666633455555555336*****97..889999*******************986 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00023      0.41      14      47 ..       3      36 ..       1      41 [. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00023
                -TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS CS
      zf-Nse 14 CPltlqpfeePvtskkCpHvFEreaIlelikrkk 47
                C ++ +  + Pv s+k   v+E++ I+++i ++ 
  KKY23944.1  3 CAISGEAPQFPVASRKSGAVYEKRLIEAYITENG 36
                8999999999********************7765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.49
# Mc/sec: 2903.32
//
Query:       KKY23945.1  [L=160]
Description: hypothetical protein UCRPC4_g02758 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-19   70.2  19.4      1e-16   61.9  19.4    2.0  1  DUF4604     Domain of unknown function (DUF4604)
  ------ inclusion threshold ------
       0.11   11.6   1.7       0.12   11.5   1.7    1.1  1  AC_N        Adenylyl cyclase N-terminal extracellular and tra
       0.28   10.7   1.1       0.36   10.3   1.1    1.2  1  DUF2868     Protein of unknown function (DUF2868)
        1.5    7.0  11.4        1.8    6.7  11.4    1.0  1  CDC45       CDC45-like protein


Domain annotation for each model (and alignments):
>> DUF4604  Domain of unknown function (DUF4604)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9  19.4   2.2e-20     1e-16       1     172 [.       6     158 ..       6     159 .. 0.71

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 2.2e-20
     DUF4604   1 knLsYsaeePaFLarLkaqvagkesedpilagkrralpkkrdeseeeDeaPqVVvlkeGkhlsaeevevekdaakgke.keeeeeeeeegeeaeedief 98 
                 k L+++++ePaFL+rL+a+ +  +                   +  +D+ P++V+  eG hl++ee+e  ++++++ + +e++++++e++++++   ++
  KKY23945.1   6 KDLHFEKQEPAFLRRLRARPSKPR------------------LELGDDDGPTIVDS-EGHHLTREEYETLRQRETVSTpEEQSTTKTENDNDDPM-HNK 84 
                 579999999999999998644333..................22468999*****8.***************99999964443333333333333.334 PP

     DUF4604  99 kkpkkasi.kekasslaaksskkkkkgkvvgeedeeeedkskakkkekekkkakkkkkkkkkkkkkkklLSFgdd 172
                 + p+ ++  ++++s++ ++ s k++k++++g++++e++d++ + +++ ++    k   +k+k+kkkk++LSF+d+
  KKY23945.1  85 ETPEPKDHpQKAKSTTIGA-SNKRRKAQIIGAGEDEDKDDEVEVARRITSVRSVKHITSKSKSKKKKIKLSFDDE 158
                 4444444444666777777.566666999999998888877777777777777777777889999*******997 PP

>> AC_N  Adenylyl cyclase N-terminal extracellular and transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.7   2.6e-05      0.12      97     173 ..      68     141 ..      19     155 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.6e-05
        AC_N  97 rqrsrappagdkpesaaaaakreegevrprsvelgleerrlkarieeleeddgdegesapevalslgacclallqif 173
                 +  +++    d+p +++++ + ++   + +s  +g  ++r ka+i  ++ed+  ++e+  eva  +++   ++ +i 
  KKY23945.1  68 QSTTKTENDNDDPMHNKETPEPKDHPQKAKSTTIGASNKRRKAQIIGAGEDEDKDDEV--EVARRITSV-RSVKHIT 141
                 234677788899999999999999999*****************99888887666663..444433332.2333333 PP

>> DUF2868  Protein of unknown function (DUF2868)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.1     8e-05      0.36     160     242 ..      20     138 ..       2     155 .. 0.43

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 8e-05
     DUF2868 160 aLlarlqtpsletgvnda......................................aapePeaapepkaeaepepasep..advlelelderlaelelr 218
                 +L+ar  +p+le+g +d+                                      +    +  ++ k+++ep++++++   ++++ + ++r+  + + 
  KKY23945.1  20 RLRARPSKPRLELGDDDGptivdseghhltreeyetlrqretvstpeeqsttktenD---NDDPMHNKETPEPKDHPQKakSTTIGASNKRRK-AQIIG 114
                 566666666666665555666666666666666665555552222222222222221...222222222222222222222223333333333.33444 PP

     DUF2868 219 aglgvrvaasaadgGrlddrears 242
                 ag  ++ + +++++ r+++  +++
  KKY23945.1 115 AGEDEDKDDEVEVARRITSVRSVK 138
                 444444444455555554333344 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  11.4   0.00041       1.8     118     211 ..      48     150 ..      31     159 .. 0.44

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00041
       CDC45 118 eereayealeeeeesd..eede..eeeeeddd..deeeeeeeeedeedeeedeees.kkkrksksdeeee........sddddersrkrrrsepsakkl 201
                   re+ye+l++ e ++  ee++  ++e+++dd  +++e  e +++ ++ ++++  + +k+rk+      +        ++dd+ + ++r  s +s k+ 
  KKY23945.1  48 LTREEYETLRQRETVStpEEQSttKTENDNDDpmHNKETPEPKDHPQKAKSTTIGAsNKRRKA------QiigagedeDKDDEVEVARRITSVRSVKHI 140
                 368899999999988854222234222222221122222222222222222222220222221......123333332444444445555555555555 PP

       CDC45 202 rrqlkkerrk 211
                 ++++k++++k
  KKY23945.1 141 TSKSKSKKKK 150
                 5555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1528  (0.0852251); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1124.77
//
Query:       KKY23946.1  [L=1093]
Description: putative ribosome biogenesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-56  191.0   0.0    4.1e-56  189.6   0.0    1.7  2  GTP_EFTU     Elongation factor Tu GTP binding domain
    3.1e-12   46.4   0.0    8.5e-12   44.9   0.0    1.7  1  EFG_C        Elongation factor G C-terminus
    1.1e-07   32.2   0.0      5e-07   30.0   0.0    2.2  2  GTP_EFTU_D2  Elongation factor Tu domain 2
    2.1e-06   27.8   0.0    7.1e-06   26.0   0.0    1.9  2  EFG_II       Elongation Factor G, domain II
     0.0024   17.6   0.0      0.011   15.5   0.0    2.2  2  EFG_IV       Elongation factor G, domain IV
  ------ inclusion threshold ------
      0.042   12.8   0.4       0.08   11.9   0.4    1.4  1  DUF3375      Protein of unknown function (DUF3375)
       0.14   12.2   0.1       0.59   10.2   0.0    2.2  2  MMR_HSR1     50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.6   0.0   1.6e-59   4.1e-56       1     183 [.      17     322 ..      17     393 .. 0.83
   2 ?   -2.1   0.1      0.93   2.4e+03     122     174 ..     431     490 ..     420     508 .. 0.64

  Alignments for each domain:
  == domain 1  score: 189.6 bits;  conditional E-value: 1.6e-59
                 TCEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE............TTCSSEEEEEEEESSSGGGHHHH CS
    GTP_EFTU   1 krirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle............ketkkylinliDtPGHvdFskev 87 
                 k+irni+i++hvDhGKt+Ltd L++++g+is   + a++ r+lD++++E+ rgiT++s+aisl+            + +++ylinliD+PGH+dFs+ev
  KKY23946.1  17 KNIRNICILAHVDHGKTSLTDGLIATNGIISP--KLAGKIRYLDSRPDEQLRGITMESSAISLYfsmlrksqgdpeAIKEEYLINLIDSPGHIDFSSEV 113
                 69******************************..788889********************************9995599******************** PP

                 HHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH................................. CS
    GTP_EFTU  88 irglrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk................................. 153
                 +++ r  D av++vdaveGv++qt +vlr+++ e++++i++iNK+Drl +elk+++ e++ +l r                                  
  KKY23946.1 114 STASRLSDAAVVLVDAVEGVCSQTVTVLRQVWIERLKPILVINKLDRLVTELKMSPAEAYAHLGRIleavnavigrffqgarmeedlqwrnkqeardki 212
                 ***************************************************************999*************************99999999 PP

                 ............................HHHHHHHHHTTTTTEEEEEEBTTTTBTHH.......................................... CS
    GTP_EFTU 154 ............................eeklekygekgekevpvvfgSalkgegvk.......................................... 182
                                             +e+l  ++    ++ +v+f+Sa++g++++                                          
  KKY23946.1 213 ageraavtiggddasalaqveaqfeekdDEDLYFAP----EKNNVIFASAIDGWAFTvrqfaglyekklgikrailekvlwgdfyldpktkrvlgqkhl 307
                 999999999999999976666666544444444444....5668**********988777777777777777766666666666666666666666666 PP

                 ..............H CS
    GTP_EFTU 183 ..............t 183
                               +
  KKY23946.1 308 kgrnlkpmfvqlvlE 322
                 666555555555550 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.93
                 TTEEEEEEESCGST........HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEB CS
    GTP_EFTU 122 gvpiivfiNKmDrl........kaelkeiveevkqklsrkeeklekygekgekevpvvfgS 174
                   p++ f+ Km  +        k + ++ +++ +++l+++ e+ ++ +  +e +   + + 
  KKY23946.1 431 SAPVVAFVSKMVAIpakelpsaKLRSQQAAKDSRERLRQQRESSQVTPRANE-DGVAAVIQ 490
                 5678999999988887777766666666677777777666666655555543.33333444 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   3.3e-15   8.5e-12       6      83 ..     952    1030 ..     947    1033 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 3.3e-15
                  EEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE..TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--H CS
       EFG_C    6 ivkveievpeeyvgkvisdlssrrGeiedmeqd.asgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpg 83  
                  ++ ++i+  +e++g+v++ l++r+G +++ +   ++  ++i+  +P+ae++gf++e+r+ T+G ++  + fsg+  ++g
  KKY23946.1  952 LYVCTIQSTTEVIGRVYDVLTRRHGSVLSEDLLeGTPYFTITSLLPVAESFGFSEEIRKRTSGLAQPMLVFSGFGVLEG 1030
                  6789*****************************8899************************************988876 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.7     7e+03      41      63 ..     204     226 ..     201     229 .. 0.80
   2 !   30.0   0.0   1.9e-10     5e-07       3      74 .]     515     593 ..     514     593 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.7
                  ETEEESEEETTSEEEEEEEESSC CS
  GTP_EFTU_D2  41 fhededeavaganaGvivaikgl 63 
                  ++++ +  +ag++a v +++++ 
   KKY23946.1 204 NKQEARDKIAGERAAVTIGGDDA 226
                  566778889*******9999875 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 1.9e-10
                  EEEEEEEESEEETTEEEEEEC.TCTTSEE.........EEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   3 valgrvysGtlkkGdevrilg.ndtskke.........ivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  v ++r+ysGtl +Gde+++l  +    ++          +++i++l+  +++  e    ++aG i +i gle +i+++ tl+
   KKY23946.1 515 VGFARLYSGTLTVGDEIYVLApK---FSPahplnasewKKVTITALYLLMGRGLESLQSVPAGAIFGIEGLEGHILKTGTLC 593
                  5699***************5544...556777**********************************************9998 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         2     5e+03      18      33 ..     494     509 ..     490     511 .. 0.87
   2 !   26.0   0.0   2.8e-09   7.1e-06       3      74 ..     610     681 ..     608     682 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2
      EFG_II  18 edklskaLarlleEDp 33 
                 +  l+++L+++ +EDp
  KKY23946.1 494 QASLDDSLETVKAEDP 509
                 678999*********9 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 2.8e-09
      EFG_II   3 ePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkrey.kvevelg 74 
                  P++ +++ep++ ad  k+ + L+ l + Dp   +e    ++e ++   GelHle  ++ l++++ k++v+ g
  KKY23946.1 610 APIVRVSLEPSNPADLGKMVRGLKLLEQSDPCAMYE-QLPSGEHVILTAGELHLERCLKDLRERFaKCDVQAG 681
                 79*****************************97666.56799********************99856777765 PP

>> EFG_IV  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.4e-06     0.011      61      97 ..     858     894 ..     839     902 .. 0.86
   2 ?   -3.3   0.0       2.9   7.3e+03      71      91 ..     918     938 ..     911     941 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.4e-06
                 CCHHHHCCCCCCTTS-TTTS--EESEEEEEEEEE--T CS
      EFG_IV  61 yieavekGfqealkeGplagepvtdvkvtLldgslhe 97 
                 + +++  +fq a+ +Gpl++epv++v v L  +++  
  KKY23946.1 858 FSDTITYAFQLATSNGPLCHEPVQGVAVFLELVTYSP 894
                 6789999*********************999888865 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.9
                 CCTTS-TTTS--EESEEEEEE CS
      EFG_IV  71 ealkeGplagepvtdvkvtLl 91 
                 +a  +G l+ge +t ++ ++ 
  KKY23946.1 918 DAASSGRLTGEVITSIRSSIS 938
                 678899999999999987765 PP

>> DUF3375  Protein of unknown function (DUF3375)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   3.1e-05      0.08     363     438 ..     445     521 ..     412     538 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.1e-05
     DUF3375 363 paleeveeaaeeadaaeldledlralvgqsevdraelaeavraaLaergqvtlaevlealP.aeqglaelvgllsla 438
                 pa+e  +++  +++aa+ + e+lr++ ++s+v  ++ ++ v+a++++  q++l ++le+   +++  ++lvg+ +l 
  KKY23946.1 445 PAKELPSAKLRSQQAAKDSRERLRQQRESSQVTPRANEDGVAAVIQAVAQASLDDSLETVKaEDPNCEHLVGFARLY 521
                 333222355667777888899999999999*******************************99**********9886 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00023      0.59      47     114 .]      74     157 ..      21     157 .. 0.54
   2 ?   -2.5   0.0         2   5.1e+03      52      87 ..     408     447 ..     403     501 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00023
                 E.......................EEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  47 e.......................ielvDtpGliegaseekglgkaflalee.adlillvvdaseeklkpldeeleelleeakkplilvlnk 114
                                         i+l+D pG i+       ++ ++    + +d+++++vda e+  ++    l ++  e+ kp ilv+nk
  KKY23946.1  74 AislyfsmlrksqgdpeaikeeylINLIDSPGHID-------FSSEVSTASRlSDAAVVLVDAVEGVCSQTVTVLRQVWIERLKP-ILVINK 157
                 0334444444444555555555669*******776.......556666555658********99554444444455555555566.677776 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2
                 ECGGCSSHHHHHH...HHHHHHHHHHCTSEEEEEEETT....T CS
    MMR_HSR1  52 DtpGliegaseek...glgkaflaleeadlillvvdas....e 87 
                 D pG  +  + ++   +   +f+a  +a ++++v ++     +
  KKY23946.1 408 DSPG-SK--HVDEdikDAMVHFKADASAPVVAFVSKMVaipaK 447
                 7888.43..4444112344444444445666666554444441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1093 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.48
# Mc/sec: 6864.37
//
Query:       KKY23947.1  [L=373]
Description: putative alpha-ketoglutarate-dependent sulfonate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-47  160.1   0.7    1.3e-46  159.6   0.7    1.2  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.6   0.7   7.1e-51   1.3e-46       4     267 ..      70     330 ..      67     331 .. 0.89

  Alignments for each domain:
  == domain 1  score: 159.6 bits;  conditional E-value: 7.1e-51
        TauD   4 pltpkfgae..gvdlsdleslddelkeelrellaeygvvvfrgfplspeqqlefarrfGplygtpgrgtntkygevld.vssvyesadianlayttllw 99 
                 +lt+ +g+   +v+ls+   l++ + +el  l+ e+gvv+f++++l+ +qq+++++  G l ++p   t    + v +  s+ ++ ad +++  + ++w
  KKY23947.1  70 DLTESIGTLleNVQLSQ---LNETQLDELALLVCERGVVFFKDQDLTTDQQIKLFEHYGVLDRHPTLRT---ERTVKIkGSNADARADLMYTPWAQAGW 162
                 57788888877888888...78888*********************************98888883333...33333344566788899999999999* PP

        TauD 100 HtDlsylesppgiqlLhcleapatGGetpfvDgraaynaLpeelpellegltavrvyyhyrggglrteqelpavdkhprtghpvvrthpvltgrkallv 198
                 H D s++ +pp+++lL+++e+p  GG+t++v+ +  y++L+ + ++ +e+l+a+++ + ++  +    +   a +      hp+vrthpv tg ka +v
  KKY23947.1 163 HADTSFEINPPSYSLLRMEEHPDVGGDTAWVSQYGLYDELSTAYKRMFENLHAIHTSRLQYE-TMLDLWGIGANRAPVDMHHPAVRTHPV-TGLKAWNV 259
                 **********************************************************9999.77788888899999999*********8.******** PP

        TauD 199 nppfatrieglgtpeskelldaleelledp.eftyrfqwqeGdlvifdNrrvlHgrt..afdegeeRhllrc 267
                 n+ f   + +l++ es++l+d+  +++ ++ ++ +rf+w  G+++++dNr+vlH+     f++g +R+ +r+
  KKY23947.1 260 NECFVEGFAELKKLESDKLMDFSVQHIHSAdDHYVRFKWNVGSVAMWDNRCVLHRVIpgRFETG-SRRGVRT 330
                 *****************************55**************************8889888.7776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 2329.30
//
Query:       KKY23948.1  [L=130]
Description: hypothetical protein UCRPC4_g02761 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       841  (0.0469072); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 933.10
//
Query:       KKY23949.1  [L=201]
Description: putative uncharacterized serine-rich protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-56  189.8   1.0    6.3e-56  189.6   1.0    1.0  1  Glyco_hydro_cc  Glycosyl hydrolase catalytic core


Domain annotation for each model (and alignments):
>> Glyco_hydro_cc  Glycosyl hydrolase catalytic core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.6   1.0   3.5e-60   6.3e-56      45     239 .]       1     188 [.       1     188 [. 0.94

  Alignments for each domain:
  == domain 1  score: 189.6 bits;  conditional E-value: 3.5e-60
  Glyco_hydro_cc  45 mlwgaksad.tdalanvksa.akenskylLgFNePDlksqsnmspeeAaklwkqliqplrekgvklvsPavaatnseegleWldeFleacskdck 137
                     mlw++ ++  + + +nv+s+  +++  y+LgFNePDl++q+nm+++eA+++w ++i+pl ++g+kl++Pav++ +s++gl+Wl++Fle+cs +c+
      KKY23949.1   1 MLWSDATDLtSVWSSNVASLgGSSATPYILGFNEPDLSTQANMTVSEAVSAWLTYIEPLSSQGYKLGAPAVTNGGSPMGLTWLSSFLEQCS-TCT 94 
                     99*998877789999****97778889********************************************66666***************.*** PP

  Glyco_hydro_cc 138 vdflavHwY..kgdfeelkehieelheayn..kpiWvTEfalqsesgdasqeetkeflnevlawldsqeyVeryawfgfrsevsnvgannaLlde 228
                     +df+++HwY   ++f  +k++++e+h+ ++  +p+W+TEf     ++ +s++e+ +fl++v++wlds ++++ryawfg        + +++L+++
      KKY23949.1  95 IDFIPIHWYdsATNFYYFKAYMQEAHQVAGddRPLWITEF-----QAYGSEDEQITFLETVMPWLDSLTWIQRYAWFG--------VFQDNLVSA 176
                     *********75566**************************.....699******************************........88899**** PP

  Glyco_hydro_cc 229 nG.eltelgsaY 239
                     +G  +t+lg++Y
      KKY23949.1 177 DGsVMTPLGQVY 188
                     **899*****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1379.95
//
Query:       KKY23950.1  [L=632]
Description: putative homeobox domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-20   70.8   4.4    1.3e-19   69.7   4.4    1.6  1  Homeodomain  Homeodomain
     0.0015   18.4   0.5     0.0036   17.2   0.5    1.6  1  Homeobox_KN  Homeobox KN domain


Domain annotation for each model (and alignments):
>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   4.4   1.5e-23   1.3e-19       2      56 ..      71     125 ..      70     126 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 1.5e-23
                  T-SSSS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Homeodomain   2 rkRttftkeqleeLeklFeenrypsaeereeLAkklgLeerqVkvWFqNrRakek 56 
                  +kR++ t++ql +Le +F++n++p+a+ re++A++++++er V++WFqNrRak k
   KKY23950.1  71 QKRQRATQDQLLTLEMEFNKNPTPTASVRERIAQEINMTERSVQIWFQNRRAKIK 125
                  69***************************************************88 PP

>> Homeobox_KN  Homeobox KN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.5     4e-07    0.0036       7      39 ..      90     122 ..      87     123 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4e-07
  Homeobox_KN   7 hnPYPseedKeeLlkeTglsvkqitnWFINaRr 39 
                  +nP P++  +e++++e +++ + ++ WF N R+
   KKY23950.1  90 KNPTPTASVRERIAQEINMTERSVQIWFQNRRA 122
                  6999**************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       863  (0.0481343); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 3825.75
//
Query:       KKY23951.1  [L=1684]
Description: putative phospholipid-transporting atpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-72  242.6  22.7    5.3e-72  242.6  22.7    2.3  2  PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-t
    7.7e-23   80.0   0.4    7.7e-23   80.0   0.4    2.2  2  PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
    3.1e-13   50.5   0.2    1.2e-07   32.2   0.1    3.5  2  Hydrolase        haloacid dehalogenase-like hydrolase
    5.8e-12   45.5   0.0    3.4e-11   43.1   0.0    2.2  2  Cation_ATPase    Cation transport ATPase (P-type)
    3.4e-08   33.2   0.1    1.6e-07   31.0   0.1    2.1  1  E1-E2_ATPase     E1-E2 ATPase
    0.00051   19.9   0.3     0.0029   17.4   0.0    2.0  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.018   15.2   0.4       0.16   12.0   0.1    2.3  2  HAD_2            Haloacid dehalogenase-like hydrolase
        1.2    9.4   8.1       0.12   12.7   2.1    2.3  2  DUF3852          Protein of unknown function (DUF3852)


Domain annotation for each model (and alignments):
>> PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   4.7     0.099   2.2e+02     182     242 ..     550     614 ..     528     623 .. 0.53
   2 !  242.6  22.7   2.4e-75   5.3e-72       1     249 []    1286    1537 ..    1286    1537 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.099
  PhoLip_ATPase_C 182 ililgsillyflflllyssllps....ssefygvleelfsspsfwlvlllvvvvallpdllikvl 242
                      ili++ +l++ +fl++  ++++     +s ++++++ +f+++ + +++++ +++ l + +  +++
       KKY23951.1 550 ILIVMLVLTLAIFLTIAYQIWTAkteeKSWYLQNAHVAFGQVFVSFIIMFNTMIPLSLYVSLEIV 614
                      22222233334444444444444444444455555666666655566666666555555555444 PP

  == domain 2  score: 242.6 bits;  conditional E-value: 2.4e-75
  PhoLip_ATPase_C    1 vraSDyaiaqFrfLkrLLlvhGrwsyrRisklilyffyKnvvftlvqfwfqfyngfsgqslyeswlltlynllftslpvivlgifdqdvsae 92  
                       +r+SDy+iaqFrfL +LLlvhGrw+y+R++k+ l +f+K++vf+l+q+++q y g++g+slyesw+l+++n+lftslpvi++gif++d+ a+
       KKY23951.1 1286 ARVSDYSIAQFRFLLKLLLVHGRWNYNRVCKYTLGTFWKETVFYLTQALYQRYAGYTGTSLYESWSLSMFNTLFTSLPVIFMGIFEKDLAAS 1377
                       689***************************************************************************************** PP

  PhoLip_ATPase_C   93 lllkyPelYk.lgqknklfnlktfllwileglyqsliifflsylvlddssfsdgktndlqlfgtlvftalvlvvnlkval.etktwtlilii 182 
                       +ll++PelY  lg  n  fn++++l+w++ g+ ++liiff++y ++ ++ f   ++++l+++gtl++ta+v+v+n+k+++ e+++ +++  +
       KKY23951.1 1378 TLLAVPELYAsLGPANAGFNIRKYLFWTFIGTAEALIIFFIMYSIYAKAIF--TRDQGLYAMGTLTYTACVIVINMKMQIlEMHNKSITAAV 1467
                       **********88999*******************************99998..99***********************888*********** PP

  PhoLip_ATPase_C  183 lilgsillyflflllyssllps...ssefygvleelfsspsfwlvlllvvvvallpdllikvlkrtffps 249 
                       ++++s++ +fl+++l+s  ++    +    g+l+++ +++ +wlvl+++v  ++l+++++ ++++t+ p+
       KKY23951.1 1468 AFILSVGGWFLWNILLSLTYSDnviYDVKDGFLSTFGRNLAWWLVLIIAVSSTVLLEITVSTIRATIMPT 1537
                       *************99988887788877777889*********************************9986 PP

>> PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.4   3.4e-26   7.7e-23      11      67 .]     275     331 ..     259     331 .. 0.91
   2 ?   -4.0   0.3       5.7   1.3e+04      20      31 ..    1313    1324 ..    1310    1329 .. 0.73

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 3.4e-26
  PhoLip_ATPase_N  11 kkkyasNkIsTsKYtlltFlpknLfeqFrrvaNlYFLviailqliPqisplspvtti 67 
                       + y sN I++s+Yt l+F+p++Lf qF+++aN+YFL+++ilq+iP++s+++++tti
       KKY23951.1 275 GHPYISNIIRSSRYTPLNFFPRQLFAQFSKLANFYFLCVSILQMIPGLSTTGKYTTI 331
                      458****************************************************97 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 5.7
  PhoLip_ATPase_N   20 sTsKYtlltFlp 31  
                       +  KYtl tF  
       KKY23951.1 1313 RVCKYTLGTFWK 1324
                       567*****9965 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0044       9.9       4      26 ..     653     675 ..     650     856 .. 0.69
   2 !   32.2   0.1   5.4e-11   1.2e-07      80     209 ..    1085    1271 ..    1009    1272 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0044
                 EEEESBTTTBCHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   4 vvfDkdGTLttgepsvedvivsa 26 
                 ++ Dk+GTLt+ ++  ++  v  
  KKY23951.1 653 IFSDKTGTLTNNSMKFRKMSVAG 675
                 889********997777655555 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 5.4e-11
                  HHCHHHHHHHHHHHHHHCHHHHHH.......TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT..GGGESEEEEHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx RF
   Hydrolase   80 ldippdlgaaigsaqsqgrtvall.......qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG..ddyfdaviasd 167 
                  l  ++d     ++ q++ +    +       q ++ +  +i+d+  + +++ e++ +L++a+i++++ltgd +eta  + + +   +dy d+++   
  KKY23951.1 1085 L--YSDATTSLTERQTKIE----KaadmienQFELTGATAIEDK--LQQGVPETIDKLRRANIKLWMLTGDKRETAINIGHSCRliKDYSDIIVLDH 1173
                  2..2222222222222222....133446667899999******..***************************999999999888844444444444 PP

                  CES.......STTT.................................................SHHHHHHHHHHHT..STGGGEEEEESSHHHHHHH CS
                  xxx.......xxxx.................................................xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
   Hydrolase  168 iet.......vakp.................................................spegkvaaireLq..gkpeevamVGDgvnDaaal 206 
                    +          +                                                 sp++k  +++ ++  +k + ++++GDg+nD+a++
  KKY23951.1 1174 KLGsldqritN--AivmqqyntvahsvvvvdgatlalieaestmfdlfvglaimansviccraSPSQKATLVKTIRhrVKHSVTLAIGDGANDIAMI 1268
                  44444444441..23344455556668888999999999999999999999************************8889****************** PP

                  HHT CS
                  xxx RF
   Hydrolase  207 aaA 209 
                  ++A
  KKY23951.1 1269 QEA 1271
                  998 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   1.5e-14   3.4e-11       2      84 ..     793     893 ..     792     896 .. 0.82
   2 ?   -1.7   0.0       1.5   3.3e+03      12      28 ..    1137    1153 ..    1131    1157 .. 0.84

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 1.5e-14
  Cation_ATPase   2 lcNsaafsensekdevkllGnktEsALlvlaekl...................gldteelree.......tkkvqeipFnssrKrmsvvlklepek 71 
                    lc+ +  +++++ d++    +++E+AL+++a++l                    +       +       ++++++i+F+s+rKrmsv+++  p++
     KKY23951.1 793 LCHTCMPEKDQDGDVTFQAASPDEAALVNAAKELgylvvdrqantitiktmlgRQ-------NneskyevYEILNVIEFSSVRKRMSVIMRM-PDQ 880
                    78888888889999999999**************888887777777555444444.......25555666*********************9.8** PP

  Cation_ATPase  72 kvrlyvKGApeii 84 
                    ++++++KGA   +
     KKY23951.1 881 RICVICKGADTTL 893
                    *********8765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.5
  Cation_ATPase   12 sekdevkllGnktEsAL 28  
                     ++ + + l+G+k E+A+
     KKY23951.1 1137 ANIKLWMLTGDKRETAI 1153
                     5667899*********8 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.1   7.2e-11   1.6e-07      15     173 ..     393     617 ..     378     623 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 7.2e-11
                   -EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.....EEE-TTTS---S-EE-.......................................... CS
  E1-E2_ATPase  15 eeeidakelvpGDivllkagdrvpaDgrivegsa.....evdesaLTGEslpvek.......................................... 64 
                   +++ + +++++GDiv l+  +  paD  ++ +++      v++ aL GE    +k                                          
    KKY23951.1 393 WQSTKWQDIKVGDIVMLERDNAAPADLALIYSKDsnqlaYVETMALDGETNLKSKqaphtvaskcqtavglascraqlivedpnidlynfdgsitln 489
                   6778899**********************99666565789********************************************************* PP

                   ......G-TTEE-TT-EEEE.-EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT......... CS
  E1-E2_ATPase  65 ......ekgdmvfsGtvvvs.geakavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla......... 145
                         ++ + ++ G+v  +  +a++vV+  ge+ ++   +++ ++++ k +++q  +++++  +v++vl++a+++ ++  +++ ++          
    KKY23951.1 490 eetlplTNSEIIYRGSVLRNtPRAIGVVIYSGEECKIR--MNANKNPRIKAPQVQSVVNQVVILIVMLVLTLAIFLTIAYQIWTAKTEekswylqna 584
                   ****999**********999456777888888877776..5556788889999***********999999999998888877777777788999999 PP

                   .....HHHHHHHHHHHHHS-TTHHHHHHHHHHH CS
  E1-E2_ATPase 146 .....eallralallvaaiPcaLplavplalal 173
                        + +++++ ++  +iP  L + + ++ a+
    KKY23951.1 585 hvafgQVFVSFIIMFNTMIPLSLYVSLEIVKAF 617
                   9999999999************99998887665 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.68   1.5e+03      73     144 ..    1041    1112 ..    1035    1155 .. 0.62
   2 !   17.4   0.0   1.3e-06    0.0029     187     226 ..    1238    1275 ..    1234    1283 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.68
                   EEEE--B-HHHHHHHHHHHHHTTCEEEEEESSEEEESTT.THHHHHHHHHCHCTCEEEESHHHHHCHCSESE CS
  Hydrolase_3   73 ilykstiskedvkeiikllkennveillytedkvyvlnkeksekkkkeeektkkkkeeidseeeledeeiak 144 
                   ++ ++++  e + + i+ + +++++ lly++++++ ++++ + k  ++++++ ++++++ +++ +  e+ + 
   KKY23951.1 1041 LVVNDSMVFERCFQHINDFASEGLRTLLYGHRYLMEEEYQTWAKLYSDATTSLTERQTKIEKAADMIENQFE 1112
                   566777778888888888899999999999888888888444444444444444444444443333333333 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 1.3e-06
                   SHHHHHHHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEE CS
  Hydrolase_3  187 sKgtalkklakelnisleeviafGDgeNDieMLeaaglgv 226 
                   +K+t +k++    +++++ ++a+GDg NDi+M++ a +g+
   KKY23951.1 1238 QKATLVKTIR--HRVKHSVTLAIGDGANDIAMIQEAHVGI 1275
                   5666666666..4678889****************98887 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   7.3e-05      0.16      39     131 ..    1084    1174 ..    1053    1209 .. 0.64
   2 ?   -0.0   0.0      0.36     8e+02     148     173 ..    1248    1273 ..    1229    1276 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.3e-05
       HAD_2   39 kliglslrellrklgeseeeeekieellrkyneekkkkevkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedv 131 
                  kl+   +  l ++ ++ e+  ++ie  ++   +   +   k+ +gv e++++L++a++kl   T  +re++ +    + + + ++ i++ ++ 
  KKY23951.1 1084 KLYSDATTSLTERQTKIEKAADMIENQFELTGATAIE--DKLQQGVPETIDKLRRANIKLWMLTGDKRETAINIGHSCRLIKDYSDIIVLDHK 1174
                  3333333333444444444444666666655555555..68899***************************9999999876555555554443 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.36
       HAD_2  148 lklkkeeviyvGDsptDieaakkagi 173 
                    +k++ ++ +GD  +Di   ++a +
  KKY23951.1 1248 HRVKHSVTLAIGDGANDIAMIQEAHV 1273
                  57899999**********99888765 PP

>> DUF3852  Protein of unknown function (DUF3852)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.1   5.3e-05      0.12      43      97 ..     539     593 ..     529     602 .. 0.82
   2 ?   -1.7   0.4       1.6   3.7e+03      37      63 ..    1447    1473 ..    1412    1484 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.3e-05
     DUF3852  43 sqiktvvnnvvfpvidvilavllfvklatayldYrkhgqlefaapailfagLvfs 97 
                  q+++vvn+vv++++ ++l++ +f  +a      + +++  +   a + +g vf+
  KKY23951.1 539 PQVQSVVNQVVILIVMLVLTLAIFLTIAYQIWTAKTEEKSWYLQNAHVAFGQVFV 593
                 69***********************999988887777777777766666666665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.6
     DUF3852   37 twkeaksqiktvvnnvvfpvidvilav 63  
                   + ++k qi ++ n+ ++ ++ +il+v
  KKY23951.1 1447 IVINMKMQILEMHNKSITAAVAFILSV 1473
                  445688888888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1215  (0.0677673); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.99u 0.26s 00:00:01.25 Elapsed: 00:00:00.48
# Mc/sec: 10650.71
//
Query:       KKY23952.1  [L=800]
Description: putative protein kinase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-10   39.8   0.0    6.5e-10   38.8   0.0    1.4  1  Pkinase      Protein kinase domain
    1.4e-08   34.3   3.9       0.18   12.2   0.0    5.1  5  HEAT         HEAT repeat
    1.6e-08   34.1   0.0    2.7e-08   33.4   0.0    1.2  1  Pkinase_Tyr  Protein tyrosine kinase
    8.2e-07   29.3   0.5     0.0018   18.7   0.0    4.1  5  HEAT_2       HEAT repeats
    3.8e-06   27.0   0.0      1e-05   25.6   0.0    1.7  1  Cnd1         non-SMC mitotic condensation complex subunit 1
     0.0088   16.5   0.7        8.4    7.0   0.0    4.1  4  HEAT_EZ      HEAT-like repeat
  ------ inclusion threshold ------
      0.011   14.3   0.2      0.018   13.6   0.2    1.4  1  Adaptin_N    Adaptin N terminal region


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   2.5e-13   6.5e-10      46     195 ..      65     223 ..      36     263 .. 0.83

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 2.5e-13
                 HHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTEEEE-SGT CS
     Pkinase  46 lrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeeakkiakqilegleylH.skgiiHrDlKpeNiLidekgelKitDFG 143
                 ++  k l++l+hp iv++++++e++ ++y+v+e ++   l  +++ ++s++ee+ak  + +i++ l+++  +++ +H  +  + +  +e+ge K++ F 
  KKY23952.1  65 QNAAKKLRTLRHPGIVKVLDTIETDANIYIVTERLS--PLSWHVK-RKSITEETAKWGLFTIASTLKFVNdDAKSVHGAVRVSSVYTSESGEWKLGGFE 160
                 55667899***************************9..6777775.689********************97788************************* PP

                 TSEESSSSCSBCTTTSCGG.....GS-HHHH......TTSCBSHHHHHHHHHHHHHHHHHSS- CS
     Pkinase 144 lakelessskltsfvgtse.....YlAPEvl......keneyskkvDvWslGvilyelltgkp 195
                 l + ++ +  +  ++gt       Y APEv        ++   +++D +++G++ +e+++g+ 
  KKY23952.1 161 LLSSMNDEDAVIYRCGTLMpdfglYAAPEVAnggwtvIKKAPLAATDAYGYGILAFEVFNGSY 223
                 **********9999**98444555*******75554333555999*************99974 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         6   1.5e+04       5      15 ..     161     171 ..     161     175 .. 0.76
   2 ?    3.1   0.3     0.055   1.4e+02       1      26 [.     353     378 ..     353     382 .. 0.87
   3 !   12.2   0.0   6.8e-05      0.18       1      30 [.     392     421 ..     392     422 .. 0.93
   4 !   11.9   0.0   8.2e-05      0.21       1      30 [.     431     460 ..     431     461 .. 0.93
   5 ?    3.9   0.2     0.032        83       3      26 ..     472     495 ..     470     498 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6
                 HHHHHT-SSHH CS
        HEAT   5 llkllsDpspe 15 
                 ll+ ++D+++ 
  KKY23952.1 161 LLSSMNDEDAV 171
                 67889**9986 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.055
                 HHHHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLga 26 
                 llPl+++l  +p+  +R + +  L +
  KKY23952.1 353 LLPLIIRLFASPDRAIRVSLLDVLPQ 378
                 89***************998877755 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 6.8e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 ++P l++  +D++p VRe ++k++ +++++
  KKY23952.1 392 IFPQLVTGFTDTAPVVREQTVKSILTIISK 421
                 78**********************999876 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 8.2e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 ll  l k  +D+ p +R ++  +Lg++a++
  KKY23952.1 431 LLRYLAKTANDEQPGIRTNTTICLGKIARN 460
                 688999*9*******************987 PP

  == domain 5  score: 3.9 bits;  conditional E-value: 0.032
                 HHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLga 26 
                  ++ ++l+Dp  + R aA++aL a
  KKY23952.1 472 AAFTRALRDPFVHARNAALLALSA 495
                 568899***************976 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   1.1e-11   2.7e-08      28     209 ..      44     229 ..      32     252 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 1.1e-11
                  EEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHH.TTE CS
  Pkinase_Tyr  28 evkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLes.kkl 124
                  + ++ + t++ +a++++     + ak +++l+hp ivk+l  +  + +++ivte +    L+ ++++k   ++t ++     + +A+ ++++++  k 
   KKY23952.1  44 KSTCSIFTFDISANRSRLPLAQNAAKKLRTLRHPGIVKVLDTIETDANIYIVTERL--SPLSWHVKRK---SITEETAKWGLFTIASTLKFVNDdAKS 136
                  55555556666666666666677999****************************65..6799999998...888888888899*********972579 PP

                  EEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGG..GS-HHHHHHSE......EEHHHHHHHHHHHHHHHHTTSSGTTTTS CS
  Pkinase_Tyr 125 vHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvk..WmapEslkekk......ftsksDvWsfGvllwEiftlgespypgl 209
                  vH  ++   v  se+   k++ f L ++++++d    + ++ +p    + apE+ + +          ++D + +G+l +E+f+ + +   +l
   KKY23952.1 137 VHGAVRVSSVYTSESGEWKLGGFELLSSMNDEDAVIYRCGTLMPDFglYAAPEVANGGWtvikkaPLAATDAYGYGILAFEVFNGSYRGADQL 229
                  *****************************999988888888888543399****9987655444456789*************9665555555 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.6   1.2e+04      26      44 ..      25      43 ..       5      46 .. 0.72
   2 ?   -0.5   0.0      0.63   1.6e+03      17      44 ..      64      91 ..      59     100 .. 0.78
   3 !    7.5   0.0    0.0021       5.3       4      55 ..     356     415 ..     353     428 .. 0.81
   4 !   18.7   0.0   6.9e-07    0.0018       5      87 ..     397     493 ..     393     494 .. 0.75
   5 !   14.3   0.1   1.6e-05     0.041       4      57 ..     435     495 ..     432     512 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.6
      HEAT_2 26 rignpealpaLvelleded 44
                r++n+e++++L++ ++ ed
  KKY23952.1 25 RLDNDESIWTLHNGIKKED 43
                7889999999999887776 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.63
      HEAT_2 17 rraairaLgrignpealpaLvelleded 44
                +++a++ L ++++p +++ L  + +d++
  KKY23952.1 64 AQNAAKKLRTLRHPGIVKVLDTIETDAN 91
                6899999999999999988866555555 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0021
      HEAT_2   4 LlqalendpdpevrraairaLg........rignpealpaLvellededpavRraaaeaL 55 
                 L+ +l  +pd ++r   +++L         +i n++++p Lv   +d+ p vR++ ++++
  KKY23952.1 356 LIIRLFASPDRAIRVSLLDVLPqvidripqKIVNDRIFPQLVTGFTDTAPVVREQTVKSI 415
                 55556689999999999999997777666556677*********************9986 PP

  == domain 4  score: 18.7 bits;  conditional E-value: 6.9e-07
      HEAT_2   5 lqalendpdpevrraairaLgrignp........ealpaLvellededpavRraaaeaLgaig........dpealpaLkellddddddvvReaAaeaL 87 
                 +    +d  p vr ++++++ +i ++        e+l++L + ++de p +R +    Lg+i+        ++  ++a +++l+d+ +   R+aA+ aL
  KKY23952.1 397 VTGF-TDTAPVVREQTVKSILTIISKlsdrvingELLRYLAKTANDEQPGIRTNTTICLGKIArnlgtssrSKVLVAAFTRALRDPFVHA-RNAALLAL 493
                 5555.6888889998888888444433444555599************************995444443323446899999999999998.89999998 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 1.6e-05
      HEAT_2   4 LlqalendpdpevrraairaLg........rignpealpaLvellededpavRraaaeaLga 57 
                 L + + nd+ p +r ++ ++Lg        + +++ +++a++++l+d+  + R aa  aL+a
  KKY23952.1 435 LAKTA-NDEQPGIRTNTTICLGkiarnlgtSSRSKVLVAAFTRALRDPFVHARNAALLALSA 495
                 55656.89999999999999994444333333334669999999999999999999999986 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0     4e-09     1e-05      18     106 ..     388     479 ..     375     540 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 4e-09
        Cnd1  18 lveylvepLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselaklleDenprVvanalaalteisek.senaiynllpdiisklsd 106
                 + + + ++L ++++D+ p VR++++  ++ +   l d v++ ++l  lak  +De+p +++n+ ++l +i+++ +++   ++l   + + + 
  KKY23952.1 388 VNDRIFPQLVTGFTDTAPVVREQTVKSILTIisKLSDRVINGELLRYLAKTANDEQPGIRTNTTICLGKIARNlGTSSRSKVLVAAFTRALR 479
                 56788999***********************444568999999****************************998666666666666655554 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.1   7.9e+03      27      45 ..     351     369 ..     342     371 .. 0.65
   2 ?    0.5   0.0      0.36   9.2e+02      29      49 ..     392     412 ..     390     415 .. 0.61
   3 !    7.0   0.0    0.0033       8.4      28      55 .]     430     457 ..     430     457 .. 0.95
   4 ?    3.4   0.3     0.046   1.2e+02      28      53 ..     469     494 ..     466     496 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.1
     HEAT_EZ  27 peilpaLlalLnddsdeVR 45 
                 +++lp+ ++l  +++ ++R
  KKY23952.1 351 SRLLPLIIRLFASPDRAIR 369
                 5566666666666555767 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.36
     HEAT_EZ  29 ilpaLlalLnddsdeV.RaaAa 49 
                 i p+L+ + + d ++V R++++
  KKY23952.1 392 IFPQLVTGFT-DTAPVvREQTV 412
                 4555555555.566555**998 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0033
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaAagaLgnl 55 
                 e+l++L+++ nd+++ +R+++ ++Lg++
  KKY23952.1 430 ELLRYLAKTANDEQPGIRTNTTICLGKI 457
                 6899**********************97 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.046
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaAagaLg 53 
                 ++++a+ ++L+d+  + R aA+ aL+
  KKY23952.1 469 VLVAAFTRALRDPFVHARNAALLALS 494
                 68999999**8888899*****9998 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2     7e-06     0.018      90     196 ..     363     477 ..     333     531 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7e-06
                 SSSHHHHHHHHHHHCCC-....-CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHH.... CS
   Adaptin_N  90 dpnqlirglALrvLssir....vpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkq.lveeikellsdkdpgvvlaAvalleei.... 179
                 +p+  ir + L vL +++    ++ + + ++p++ +  +d+ p+vr + + +il++++k +d + +  l+  + +  +d++pg+ ++++  l +i    
  KKY23952.1 363 SPDRAIRVSLLDVLPQVIdripQKIVNDRIFPQLVTGFTDTAPVVREQTVKSILTIISKLSDRVINGeLLRYLAKTANDEQPGIRTNTTICLGKIarnl 461
                 677777777777777777444345556999*****************************999999999*********************9999994322 PP

                 HCCCCCCC...HHHHHHHCC CS
   Adaptin_N 180 kkndrlll...kllpklvrr 196
                        +    l+  ++r 
  KKY23952.1 462 G----TSSrskVLVAAFTRA 477
                 1....222232444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (800 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.51
# Mc/sec: 4741.58
//
Query:       KKY23953.1  [L=611]
Description: hypothetical protein UCRPC4_g02766 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0057   16.9  12.5     0.0057   16.9  12.5    2.0  2  ATG16           Autophagy protein 16 (ATG16)
  ------ inclusion threshold ------
      0.077   13.8   0.2       0.16   12.7   0.2    1.5  1  zinc_ribbon_15  zinc-ribbon family
       0.55   10.6  10.4        1.6    9.1  10.4    1.8  1  DUF4200         Domain of unknown function (DUF4200)
       0.98   10.1  18.8         12    6.6  13.2    3.1  2  JHY             Jhy protein
        3.2    7.9  14.4        7.3    6.8   1.3    2.6  2  Uds1            Up-regulated During Septation


Domain annotation for each model (and alignments):
>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       1.8   6.4e+03      60      67 ..      54      61 ..      23     106 .. 0.57
   2 !   16.9  12.5   1.6e-06    0.0057      47     151 ..     295     401 ..     283     406 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.8
       ATG16 60 ekeasasq 67
                ++++++++
  KKY23953.1 54 KNPTESQS 61
                22222222 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.6e-06
       ATG16  47 saks..sksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdre 143
                 +a++   +++k+s+++++ ++sq+ +k  +++++ ++++ +l  el+el k+ ++  q+++e++ +++  e+    + ++++el+ +++a +++l++++
  KKY23953.1 295 DARPkiVTAKKSSSNSSRWTTSQEMEKMLERLAKEKDRVRTLTLELSELRKREEDARQQVIEKERAIKSAENGQVLRVSEVEELRIRHEADQKELARLR 393
                 222245444445555555555558899************************************************************************ PP

       ATG16 144 eelrekek 151
                  e+++ +k
  KKY23953.1 394 REINDSAK 401
                 ***99877 PP

>> zinc_ribbon_15  zinc-ribbon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   4.5e-05      0.16      64      85 ..     188     215 ..     149     216 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.5e-05
  zinc_ribbon_15  64 e......kkeCknCgkeveeefkyCpkC 85 
                            +++C+ C+k++ + +++C+kC
      KKY23953.1 188 PsssnpmARKCSGCSKAILSASDFCTKC 215
                     034456699******************* PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  10.4   0.00045       1.6       6     100 ..     317     407 ..     313     412 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00045
     DUF4200   6 remfevqealeakkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekle 100
                 +em+++ e l++ k+      ++l+ +  el+k+e+  ++++++ ++ +k+ ++ ++    ++ee r +++  ++e+++l+ ei++  + ++ le
  KKY23953.1 317 QEMEKMLERLAKEKDRV----RTLTLELSELRKREEDARQQVIEKERAIKSAENGQVLRVSEVEELRIRHEADQKELARLRREINDSAKCKSGLE 407
                 44444444444444444....455667789******************************************************98877776665 PP

>> JHY  Jhy protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  13.2    0.0033        12     108     131 ..     328     394 ..     246     395 .. 0.65
   2 ?   -2.3   0.2       1.9   6.9e+03      71      84 ..     460     473 ..     459     516 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0033
         JHY 108 e...........................................lselekLkqrHekekqavaalrq 131
                 +                                           +se+e+L+ rHe +++++a+lr+
  KKY23953.1 328 KekdrvrtltlelselrkreedarqqviekeraiksaengqvlrVSEVEELRIRHEADQKELARLRR 394
                 13333444555555555555555556666666666666666666********************996 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.9
         JHY  71 IpkPkkaakpkets 84 
                 +pkP++ ++p+  +
  KKY23953.1 460 VPKPQPKPRPRDPL 473
                 78888888887763 PP

>> Uds1  Up-regulated During Septation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   6.1     0.006        22      60     121 ..     303     356 ..     282     358 .. 0.77
   2 ?    6.8   1.3     0.002       7.3       6      61 ..     358     413 ..     357     443 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.006
        Uds1  60 lyssskksakssaarsnskssreslakaeeelaeserkvdelaselekleeraaevrrrLLe 121
                 ++        +s+++s+  +++++++k  e la+ + +v  l+ el +l++r+ + r+++ e
  KKY23953.1 303 AK--------KSSSNSSRWTTSQEMEKMLERLAKEKDRVRTLTLELSELRKREEDARQQVIE 356
                 22........2334455556678899999*****************************9876 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.002
        Uds1   6 etAlvdsqefeiLsleeVeelkkelkaLeerlealrkkLaletklrdaarsLsrly 61 
                 e A++ +++ ++L + eVeel+  ++a ++ l  lr++++   k +++ + L +  
  KKY23953.1 358 ERAIKSAENGQVLRVSEVEELRIRHEADQKELARLRREINDSAKCKSGLEPLPEDT 413
                 789999********************************999888888777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1372  (0.0765241); expected 358.6 (0.02)
Passed bias filter:                      644  (0.0359195); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.80u 0.34s 00:00:01.14 Elapsed: 00:00:00.54
# Mc/sec: 3401.05
//
Query:       KKY23954.1  [L=187]
Description: putative transcription initiation factor tfiid subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-19   69.6   0.0    2.4e-18   65.9   0.0    2.2  1  TFIID-18kDa  Transcription initiation factor IID, 18kD subuni
  ------ inclusion threshold ------
      0.066   13.6   0.0       0.11   12.8   0.0    1.4  1  CENP-S       CENP-S protein


Domain annotation for each model (and alignments):
>> TFIID-18kDa  Transcription initiation factor IID, 18kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   2.7e-22   2.4e-18       3      91 ..      17     115 ..      15     117 .. 0.82

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 2.7e-22
                  -CCCCHHHHHCTTS-..........SS--HHHHHHHHHHHHHHHHHHHHHHHC-XXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  TFIID-18kDa   3 frkelqsmlyalGdv..........kePlqetvqlledlvrgyliellqqaakvaklrgsrkitlEDllfliRkDkkKlnRlkellslkellkkakKq 90 
                  f  el++mlya+G            +eP+ et+ ll+++v++++ie ++ a++ a  +g++k++++D+l+++RkD++Kl+R+k  l  +++++  ++ 
   KKY23954.1  17 FGSELKTMLYAFGAPadpsldptvpPEPYPETLRLLDEIVTDFIIETCHSAVQFATYSGRQKLKIDDFLWVLRKDNAKLGRVKRALWKEKQMRASRRI 114
                  7789*********6411222222235789*******************************************************99777766555555 PP

                  X CS
  TFIID-18kDa  91 f 91 
                  f
   KKY23954.1 115 F 115
                  5 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.3e-05      0.11      29      74 ..      47      92 ..      43      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.3e-05
      CENP-S 29 qfiaaltelvykqlenlakDLeaFakHAkRstittdDvlLlaRrne 74
                +++  l e+v + + ++++    Fa   +R++ + dD l ++R+++
  KKY23954.1 47 ETLRLLDEIVTDFIIETCHSAVQFATYSGRQKLKIDDFLWVLRKDN 92
                6677899************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 1145.67
//
Query:       KKY23955.1  [L=381]
Description: putative eukaryotic translation initiation factor 3 subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-19   69.9   0.0    3.2e-19   69.0   0.0    1.4  1  JAB         JAB1/Mov34/MPN/PAD-1 ubiquitin protease
    1.9e-18   66.9   0.5    3.4e-18   66.1   0.5    1.4  1  MitMem_reg  Maintenance of mitochondrial structure and functi
    0.00075   19.6   0.0     0.0019   18.3   0.0    1.6  2  UPF0172     Uncharacterised protein family (UPF0172)


Domain annotation for each model (and alignments):
>> JAB  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   5.4e-23   3.2e-19       4     104 ..      61     155 ..      58     164 .. 0.91

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 5.4e-23
                 CEEEEEHHHHHHHHHHHHHHHHHTS--EEEEEEEESSSE.EEEEEEEEEESEEEESSECEEEEEHHHHHHHHHHHHHHHCTTSEEEEEEEESSSS-SS- CS
         JAB   4 qavhleslvllkildhalrtekeeeevmGlliGelnddt.tveitnvfalpfeetekdvdavsldqeylekksellkklrgrervvGWYhshpditvwl 101
                  ++ l++++l++ildh +r+   +++v+G+l+G+ ++d  +v+it++fa+ + et+++   v++d+ey +++  l+ + +++e +vGWY + +++    
  KKY23955.1  61 LSISLHPQALFSILDHSQRRPPAAPRVIGTLLGSRSEDGtVVSITSSFAVGHTETTDQ---VEVDMEYQKQMLALHLRANPKEVLVGWYATSSEL---- 152
                 6799******************************99998799****************...888999999**********************998.... PP

                 -HH CS
         JAB 102 sev 104
                 +  
  KKY23955.1 153 NTF 155
                 444 PP

>> MitMem_reg  Maintenance of mitochondrial structure and function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.5   5.7e-22   3.4e-18       1     110 [.     222     331 ..     222     333 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 5.7e-22
  MitMem_reg   1 EaeeigvehllkpsiqdasstlstglnrqyyslkilqerldlikdYlkkveegelpvnheilrnlqkllnllPhleteelekefnvetnDvllvvyLas 99 
                 +ae+ g+e ++    qd+s+++st++++ +++++ +  +ld+++ Y++ v ++e+ ++++++++l ++l+l P++e +++e++fn++++Dvl+v+yLa+
  KKY23955.1 222 DAEKNGLEAIAGAMNQDRSTKVSTDIESLESAIQDVLGMLDRVEHYVEGVLDEEIVPSTALGQYLLNTLALAPKVEIADIERDFNNHIQDVLVVSYLAN 320
                 69999******99999999************************************9******************************************* PP

  MitMem_reg 100 ltrsilalnel 110
                  +r++++l++ 
  KKY23955.1 321 TIRTQMDLSNR 331
                 ******99875 PP

>> UPF0172  Uncharacterised protein family (UPF0172)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.2e-07    0.0019       2      87 ..      63     153 ..      62     159 .. 0.84
   2 ?   -2.8   0.0      0.93   5.5e+03     174     182 ..     304     312 ..     297     320 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.2e-07
     UPF0172   2 vevssqAYvKlllHaaKyptqa..VnGvLlgkkssskskvevtDavPLfH..ssltlspmlevAlaqvesyakek.glvivGyYqanerls 87 
                 +++++qA + +l H+ + p +a  V G Llg++s++++ v +t    + H  ++ ++   +e   ++   +++++ + v+vG+Y  +++l+
  KKY23955.1  63 ISLHPQALFSILDHSQRRPPAAprVIGTLLGSRSEDGTVVSITSSFAVGHteTTDQVEVDMEYQKQMLALHLRANpKEVLVGWYATSSELN 153
                 78999*************977445*************99***********5444556777788888888888886699******9988776 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.93
     UPF0172 174 DFddHLddv 182
                 DF++H++dv
  KKY23955.1 304 DFNNHIQDV 312
                 999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2552.76
//
Query:       KKY23956.1  [L=773]
Description: putative nucleolus protein required for cell [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   4.1e-171  569.9   0.0   5.5e-171  569.5   0.0    1.2  1  UTP25        Utp25, U3 small nucleolar RNA-associated SSU pro


Domain annotation for each model (and alignments):
>> UTP25  Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  569.5   0.0  3.1e-175  5.5e-171       3     473 .]     288     772 ..     286     772 .. 0.94

  Alignments for each domain:
  == domain 1  score: 569.5 bits;  conditional E-value: 3.1e-175
       UTP25   3 lqkellsilfsYkDllyeekslkdeeevrklyalHalnHvlktrdrvlknneklaklkessddlelrdqgftrpkvLillptreaalevvelllkllea 101
                 ++k l s++ +Y+D++++ +s+++++++r+l++l alnHv+ktrdrv knn +l++ + s d  elrdqgftrpkvL++lpt+++++++ve+l++l+  
  KKY23956.1 288 VEKDLGSSVLQYRDVIFADRSVRNASDLRDLICLQALNHVFKTRDRVSKNNVRLSRDT-SGDMPELRDQGFTRPKVLFILPTKNSCVQFVESLVRLSSP 385
                 6889999************************************************776.566668********************************** PP

       UTP25 102 etqvenkkrFkdefseeeee.sses..kpkdfqalFkgNtddaFrlGlkftrkslklyskfyssdiiiaSPlglrliie.eedkkkrdtdfLsSiEvli 196
                 + q+enk+rF+d+f ++ee+ ++    kp+df++lF+gN+dd+Fr+G kftrk+lk+ys+fy+sdii+aSPlglr++ie ++ +k++d+dfLsSiE++i
  KKY23956.1 386 Q-QQENKSRFQDSFANTEESkEW-GddKPEDFRELFSGNDDDMFRIGFKFTRKTLKYYSQFYQSDIILASPLGLRTVIEsSGKDKNHDSDFLSSIEIAI 482
                 *.************999886322.246****************************************************87788999************ PP

       UTP25 197 vdqadvlemQnwehvetvlkhlnkipkeshdadfsrvrmwylddqakllRQtlvfssyetpeinslfnskleNlaGkvkvkkvvkggslek...vglkv 292
                 +d+ad+l mQnw+hve+++++ln++pk+sh++df rvr+ yld+ +k++RQt+++s + +pein+l +s+l+N +G vk+ ++++g+ l+    + ++ 
  KKY23956.1 483 IDHADALLMQNWQHVEYIFSQLNLLPKDSHGCDFTRVRNIYLDNLSKYFRQTIILSPFLSPEINALATSHLHNQTGLVKYVPTYSGTMLNLpatIPPST 581
                 **************************************************************************************6654333488999 PP

       UTP25 293 rqvFqrfdaesivdepdarfkfftekilpqlkk..ssskssgiliyipsyfdfvrvrnylke....ekvsfaaiseysskkevsraRelFfkgkkkvlL 385
                 +q+F rf++ s+ ++p  rf +ft+++lp+l     ++  +g+l+++psyf f+r++ +l++    +++ f++i+eyss+++ +r+R++F++g+ ++lL
  KKY23956.1 582 TQTFLRFNSPSPSSDPSLRFTYFTTTLLPALLPtsRTKGLGGTLLFVPSYFSFLRLQTHLSSdpscTSLAFSSITEYSSHSDAARTRSHFANGRYSLLL 680
                 *******************************9833456678********************999999******************************** PP

       UTP25 386 yteRlhffrRyk.ikgvkkvilYklPenpefyselvrfleksvkeeea..dsaevsvrvlyskydalaLerivGseraakllksk.kevyef 473
                 yteR+h+frR++ i+gvk+vi++++Pen  f+ e++ +l+ ++ ++e+   + +  +r+l+sk+d l+LerivG+er+ k+++++  +v+ef
  KKY23956.1 681 YTERAHHFRRFQsIRGVKRVIFFGIPENHIFWAEICGYLGGDSVKGEDnrSQGKGRIRALFSKWDVLKLERIVGTERVGKMIRGDeGDVFEF 772
                 **********966*************************998777666534677889***************************986789988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (773 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.37s 00:00:01.12 Elapsed: 00:00:00.55
# Mc/sec: 4259.57
//
Query:       KKY23957.1  [L=844]
Description: putative pentatricopeptide repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-05   24.2   0.4    0.00024   21.2   0.1    2.7  3  PPR_2     PPR repeat family
    4.4e-05   23.5   0.0      0.059   13.5   0.0    3.4  3  PPR_3     Pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   2.7e-08   0.00024       2      48 ..     528     574 ..     527     576 .. 0.84
   2 ?   -3.6   0.0       1.5   1.4e+04      23      38 ..     733     748 ..     727     749 .. 0.75
   3 ?   -0.8   0.0      0.21   1.9e+03      12      36 ..     757     781 ..     756     782 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.7e-08
       PPR_2   2 dvvtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikgl 48 
                 + ++ N  I+  ++++ ++  +++f++M+ ++l+ +syTy  l++ +
  KKY23957.1 528 NLIIHNLTITKSFENKLSSVGWDVFDYMVAKKLPTDSYTYVALLRNC 574
                 555566666667789999999***********************987 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.5
       PPR_2  23 fklfneMkkrglePns 38 
                 ++++ e  +rg++ ++
  KKY23957.1 733 LQFMLERNERGCKVTE 748
                 6777788999998765 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.21
       PPR_2  12 glckkgkveeAfklfneMkkrgleP 36 
                 g++++ k   A+k+++ M+ +g  P
  KKY23957.1 757 GMLRHDKRAHAMKILELMRINGYDP 781
                 6788888899*********999876 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.014   1.3e+02      16      55 ..     494     534 ..     484     539 .. 0.82
   2 !   13.5   0.0   6.6e-06     0.059       2      40 ..     551     589 ..     550     593 .. 0.93
   3 ?    2.8   0.0     0.014   1.3e+02      28      48 ..     761     781 ..     750     787 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.014
       PPR_3  16 vtYthLLtayanagnkkl.alevlermkkkgikPtvvtyNa 55 
                   +++LL++  + +n +   +++l ++   g+ P+++  N 
  KKY23957.1 494 RSCNSLLQLDYVERNGDTkNFRILPELLGAGLDPNLIIHNL 534
                 57999*9998888886541689***************9997 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 6.6e-06
       PPR_3   2 ilremerkgikldvvtYthLLtayanagnkklalevler 40 
                 +++ m++k +  d +tY +LL+ ++ + ++ +++evl+ 
  KKY23957.1 551 VFDYMVAKKLPTDSYTYVALLRNCVDTDDLTRLSEVLAT 589
                 68899*******************************986 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.014
       PPR_3  28 agnkklalevlermkkkgikP 48 
                   ++  a+++le m+ +g  P
  KKY23957.1 761 HDKRAHAMKILELMRINGYDP 781
                 567889*********999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.48
# Mc/sec: 5247.60
//
Query:       KKY23958.1  [L=217]
Description: putative coiled-coil domain-containing [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-41  142.2   7.0    1.5e-41  142.2   7.0    2.0  2  cwf18     cwf18 pre-mRNA splicing factor
  ------ inclusion threshold ------
      0.028   14.8   0.6      0.028   14.8   0.6    2.2  2  DUF1771   Domain of unknown function (DUF1771)


Domain annotation for each model (and alignments):
>> cwf18  cwf18 pre-mRNA splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.2   7.0   1.7e-45   1.5e-41       1     135 []       7     157 ..       7     157 .. 0.85
   2 ?   -2.4   2.6       0.8   7.1e+03      73      73 ..     190     190 ..     158     214 .. 0.38

  Alignments for each domain:
  == domain 1  score: 142.2 bits;  conditional E-value: 1.7e-45
       cwf18   1 sLeeaaeeRKeRLaalrskkrkqee........keke.eeeeeeeeeekkelpk.........lsfRnYdpeteglklgfeappklaketveeqaaele 81 
                 +L++a+ +RK+RLa+l+s+krkq+e        + +  ++++e+ +       +         +s+RnYdpe +g+klgfe++p+ +  t+ee+a+el+
  KKY23958.1   7 TLDAASVDRKARLAKLASLKRKQPEpdttgatdD-NPtRSQSENGT-------DvstsvtkayFSGRNYDPEIRGPKLGFENAPTTGVITLEEKAHELS 97 
                 5899*******************99877776531.22233333333.......1233344577************************************ PP

       cwf18  82 eeakeeaee......skeidlfnlapkkpnwDLKRdlakklekLerrTqkAiaeLireRL 135
                 e+a+e+a++      + +idlf+l+pkk+nwDLKRdl+kk e L+++Tq+Aia+L+reR+
  KKY23958.1  98 EKAREQAAKeeeeaeKAGIDLFKLQPKKANWDLKRDLDKKKEILNVKTQNAIARLVRERI 157
                 ***9988777888888999****************************************7 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.8
       cwf18  73 v 73 
                 +
  KKY23958.1 190 L 190
                 1 PP

>> DUF1771  Domain of unknown function (DUF1771)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.6   3.1e-06     0.028      32      61 ..      91     120 ..      78     122 .. 0.92
   2 ?   -1.1   0.6      0.28   2.5e+03      41      56 ..     150     165 ..     144     169 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.1e-06
     DUF1771  32 aaAkelseqGkehgekmeeanreAaeaIfe 61 
                 ++A+else+++e+ +k ee++++A   +f+
  KKY23958.1  91 EKAHELSEKAREQAAKEEEEAEKAGIDLFK 120
                 79**********************877775 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.28
     DUF1771  41 GkehgekmeeanreAa 56 
                 ++  +e++++a +eA 
  KKY23958.1 150 ARLVRERIQNAKKEAK 165
                 6677777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1487  (0.0829383); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 1346.73
//
Query:       KKY23959.1  [L=551]
Description: putative r3h domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-10   40.2  13.0    4.3e-10   40.2  13.0    3.9  3  SUZ       SUZ domain
    2.5e-07   30.6   0.0    5.4e-07   29.5   0.0    1.6  1  R3H       R3H domain


Domain annotation for each model (and alignments):
>> SUZ  SUZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.7      0.42   3.8e+03      19      34 ..      82      97 ..      69     119 .. 0.56
   2 !   40.2  13.0   4.7e-14   4.3e-10       5      55 ..     317     394 ..     313     396 .. 0.90
   3 ?   -1.2   2.3      0.42   3.8e+03      23      41 ..     410     427 ..     398     438 .. 0.46

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.42
         SUZ 19 ssrgssgasssessss 34
                ss++++ +s  ++sss
  KKY23959.1 82 SSSSEDEQSHVSGSSS 97
                3333333333333333 PP

  == domain 2  score: 40.2 bits;  conditional E-value: 4.7e-14
         SUZ   5 mkIlkRpsssssssssrgssgasssesssss...........................ktleEREaeYaeARaRIFgs 55 
                 +kI++R++ ss++ s ++++++sss++s+++                           +t+eEREa+Y++AR RIF +
  KKY23959.1 317 VKIMRRGGASSRKASVNPETPTSSSAPSKATseaggdtnseeglaspaepntnkekakLTREEREAQYEAARRRIFAD 394
                 8**********977777777777777777769999999**************************************86 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.42
         SUZ  23 ssgasssesssssktleER 41 
                 s + sss+s+++ +  ++R
  KKY23959.1 410 SMSRSSSASGKK-RGHKQR 427
                 222222222222.333333 PP

>> R3H  R3H domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0     6e-11   5.4e-07       3      46 ..     232     276 ..     230     282 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 6e-11
                 HHHHHHHHHHHHH-S-.-EEE-----SHHHHHHHHHHHHSSEEEE CS
         R3H   3 llrvekklaefvkdtg.rslefppmssyeRriiHelaeayglese 46 
                 ll++e+k+  f++d++ + l +pp +s+ R++ H la++y+l ++
  KKY23959.1 232 LLQMEEKVLIFIHDNKdEYLDLPPQNSFGRMLAHKLADYYNLNHF 276
                 89**********998549*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3674.96
//
Query:       KKY23960.1  [L=1073]
Description: putative atp dependent rna helicase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-92  310.7   0.1    2.5e-92  309.7   0.1    1.6  1  rRNA_proc-arch  rRNA-processing arch domain
    2.2e-57  193.3   3.4      2e-56  190.2   1.7    2.6  2  DSHCT           DSHCT (NUC185) domain
    1.1e-18   67.7   0.0    3.6e-18   66.0   0.0    1.9  1  DEAD            DEAD/DEAH box helicase
    4.2e-07   30.3   0.1    3.5e-06   27.3   0.1    2.3  1  Helicase_C      Helicase conserved C-terminal domain
      1e-05   25.6   0.1    2.9e-05   24.1   0.0    1.8  2  ResIII          Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.035   13.2   0.0      0.077   12.0   0.0    1.5  1  T2SSE           Type II/IV secretion system protein
      0.078   12.9   0.3        0.4   10.6   0.0    2.3  2  ATPase_2        ATPase domain predominantly from Archaea


Domain annotation for each model (and alignments):
>> rRNA_proc-arch  rRNA-processing arch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.7   0.1   9.6e-96   2.5e-92       1     269 [.     606     871 ..     606     872 .. 0.95

  Alignments for each domain:
  == domain 1  score: 309.7 bits;  conditional E-value: 9.6e-96
                     HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHGGG--TTEEEEEEETTTEEEEEEEEE CS
  rRNA_proc-arch   1 EyMlerSFsqfqnqkslpelekklkeleeelksitiedeedieeyyklrqqleelreeirkiltkpknilpfLqpGRlvrvksnddldfgwGivl 95 
                     E+Mler+F+qfqn++s++ lek+l +le+ +++++i+de++i+eyy+lrq+l+++++++r+++ +p+++l+f+qpGRlv+vk  +d dfgwG+v+
      KKY23960.1 606 EFMLERCFHQFQNTASVSTLEKELHQLESNRSKLEISDESTIKEYYELRQTLDNYSKDMRSVIVHPNYCLQFMQPGRLVHVK-YQDFDFGWGAVV 699
                     9*********************************************************************************.999********* PP

                     EEEE-SSS.T.TB---TCTTEEEEEEEEEEETTS-GGG--TT--S--TT--B-TT..S-EEEEEEEEEGGGEEEEEEEEE---SSTTSTTHHHHH CS
  rRNA_proc-arch  96 nfkkrnkn.skeeeasdeesyvVdvllvlsenskrkdedgekseesaeelkPkagdrekgevevvpvplkcieaiSsvrlklpkdlrkseareev 189
                     nf +r++  +++ee ++++s ++dv l+++e++++ ++     ++ +++++P ++   k ++ev+pv l+c++aiS++r++ pkdl+++++re+v
      KKY23960.1 700 NFAQRKQPrDATEELTPQQSWILDVCLPCAEGPSTGTKT---YQALPRGVRP-PEAGGKVSMEVIPVLLECVQAISHIRIFQPKDLTSFSEREKV 790
                     **977555555556999***************9875444...477899****.677789999********************************* PP

                     HHHHHHHHHHSS.---B--TTTTS----HHHHHHHHHHHHHHHHHHTSGG.GSSSHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  rRNA_proc-arch 190 akavqelkrrfp.giplldpikdmkikdeefkkllkkiealesrlaknpllhspnleelyalyekkvalqeeikelkkeis 269
                      ka++e+k+rfp gi +ldpi++m+i+d++f+kll+kie lesrl +npl++sp+l+ely++y++kval ++ik+lkk+i+
      KKY23960.1 791 RKALDEVKKRFPdGIVTLDPIENMGITDDSFRKLLRKIEVLESRLLANPLHNSPRLPELYSKYSEKVALSDRIKSLKKQIQ 871
                     **************************************************889**************************97 PP

>> DSHCT  DSHCT (NUC185) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.067   1.7e+02      32      84 ..     419     466 ..     412     508 .. 0.72
   2 !  190.2   1.7   7.9e-60     2e-56       2     163 ..     899    1067 ..     898    1068 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.067
       DSHCT  32 ddlepeelaAllsalvfeekredeeekepkl.seeleealeelkeiaeriakvs 84 
                 ++ e e+la  +s+++f+e++e+       + ++ ++ ale l+e+++++ +++
  KKY23960.1 419 SKRECEALAIQMSSMTFNEETEKA------MvTKVFNSALEMLSEEDKKLPQIE 466
                 556778899999******996553......337888889998899999988775 PP

  == domain 2  score: 190.2 bits;  conditional E-value: 7.9e-60
       DSHCT    2 ntvtlkGrvaaeirsedeLlltellfsgvlddlepeelaAllsalvfeekredeeekepklseeleealeelkeiaeriakvs............ve 86  
                  ++v+lk+rva+ei+++deL+l+ellf+ ++++l+pe++aA+ls++vfeek++d +    +l+++le +l+e++++a++iakvs            v+
  KKY23960.1  899 EVVQLKARVACEISTGDELMLSELLFNRFFNELTPEQCAAVLSCFVFEEKSKDVQ----SLPAALEAPLREIQKQARMIAKVSqecklpvneeeyVQ 991 
                  689***********************************************88754....5799*******************************766 PP

       DSHCT   87 srldlglvevvyaWakgasfaellektdldeGdiVRllrrleellrqlakaakvigneeLkkkaeeaielikRdiVf 163 
                  s +++ l++v+y+Wa g+sfae++++td++eG+++R++rrlee lrq+a+a+kv+g+eeL+kk+eea  +++RdiV 
  KKY23960.1  992 S-FKWTLMPVIYEWAMGKSFAEICKMTDVYEGSLIRTFRRLEEALRQMAQASKVMGSEELEKKFEEALGKVRRDIVA 1067
                  5.9*************************************************************************6 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   1.4e-21   3.6e-18       2     172 ..     155     302 ..     154     305 .. 0.89

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 1.4e-21
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdi 100
                 + Q+ +i  i ++++vlv+a+T +GKT ++  ++ q++     k++ ++++ +P ++L +q +++++  +      v l++g+v+ +        ++ +
  KKY23960.1 155 PFQQVSIASIEREESVLVSAHTSAGKTVIAEYAIAQCL-----KNNQRVIYTSPIKALSNQKYREFTAEFGD----VGLMTGDVTINP-------TATC 237
                 68************************************.....78889******************998885....446677777643.......3566 PP

                 EEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkd 172
                 +v+t++ l ++l +g+  +++v ++V+DE++ + d+ ++  +++ +  l       + + + ++lSAT+p+ 
  KKY23960.1 238 LVMTTEILRSMLYRGSEIMREVGWVVFDEIHYMRDKTRGVVWEETIILL-------PDKVRYVFLSATIPNA 302
                 7***********999988**************************99999.......55678********954 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   1.4e-09   3.5e-06      39     111 .]     466     552 ..     395     552 .. 0.70

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.4e-09
                 T......TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.........SSHHHHHHHHTTSSSTT CS
  Helicase_C  39 k......gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.........rnvtsyiqriGRtgRag 111
                 +         + v+h+ l    +e i   f++g ++vL at   + G+++p +++V++ ++           +++++iq++GR+gR g
  KKY23960.1 466 EhilpllRRGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMP-AKTVVFTNVRkfdgvsqrwVTPSEFIQMSGRAGRRG 552
                 1333444667778999999999999999**********************9.6667766666555556553337************75 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.1e-08   2.9e-05      14     170 ..     163     300 ..     146     301 .. 0.85
   2 ?   -3.6   0.1       3.8   9.7e+03     122     140 ..     626     644 ..     609     660 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.1e-08
                 HHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHH CS
      ResIII  14 nlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiq 112
                 ++      +r++ +l+ + T +GKT++a  +i+++lk+++  +++   p k+l +q ++ef+  + +      + ++gd  ++      ++  lv+t++
  KKY23960.1 163 SI------EREESVLVSAHTSAGKTVIAEYAIAQCLKNNQ--RVIYTSPIKALSNQKYREFTAEFGDV-----GLMTGDVTIN-----PTATCLVMTTE 243
                 33......7999****************999999999855..9**********************985.....7899999998.....89999999999 PP

                 HHHHTH........HHHTTT-SEEEEETGGGTTS.T...TTHH.HHHT---SEEEEEESS-S CS
      ResIII 113 sldadseeeeeeseellrdrfdviiiDEaHrlgakk...swre.ilekfkeavllglTATpe 170
                  l + +     ++ +    +   +++DE H +++k+    w+e i+   ++   + l+AT++
  KKY23960.1 244 ILRSML-----YRGSEIMREVGWVVFDEIHYMRDKTrgvVWEEtIILLPDKVRYVFLSATIP 300
                 999999.....77777778888************7477899997777778888899999975 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.8
                 .....HHHTTT-SEEEEET CS
      ResIII 122 eeeseellrdrfdviiiDE 140
                 e+e ++l+++r+++ i DE
  KKY23960.1 626 EKELHQLESNRSKLEISDE 644
                 5677777888888888887 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     3e-05     0.077     119     161 ..     157     199 ..      93     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3e-05
       T2SSE 119 aevlrkavrerglilvsGgTgsGKttll.yallkeinksderiv 161
                 ++v  ++++++ ++lvs  T+ GKt+++ ya+ + ++++ +r++
  KKY23960.1 157 QQVSIASIEREESVLVSAHTSAGKTVIAeYAIAQCLKNN-QRVI 199
                 455556789999***************977777777777.5544 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00015       0.4      19      71 ..     166     218 ..     159     320 .. 0.82
   2 ?   -1.5   0.2      0.78     2e+03     155     205 ..     409     459 ..     396     468 .. 0.44

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
    ATPase_2  19 pneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefiee 71 
                 ++e +++    + GKt +   +i + ++ +++viy ++++  s++k++ef +e
  KKY23960.1 166 REESVLVSAHTSAGKTVIAEYAIAQCLKNNQRVIYTSPIKALSNQKYREFTAE 218
                 5555666666789*************************************654 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.78
    ATPase_2 155 ekhlcvviclsS...eglfiervyneselegrhky.ilvddldketalnflkegf 205
                 ++h ++v+  s    e l i+    +s+  +  +  + v+ + +++al++l e  
  KKY23960.1 409 NYHPVIVFSFSKrecEALAIQ---MSSMTFNEETEkAMVTKV-FNSALEMLSEED 459
                 555555555554322222222...333322222222222222.255555554432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1073 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1147  (0.0639746); expected 358.6 (0.02)
Passed bias filter:                      790  (0.0440627); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.93u 0.35s 00:00:01.28 Elapsed: 00:00:00.52
# Mc/sec: 6167.46
//
Query:       KKY23961.1  [L=1339]
Description: putative iki3 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.2e-285  948.8   0.0   3.8e-285  948.5   0.0    1.1  1  IKI3           IKI3 family
    0.00069   19.9   0.4         13    6.1   0.0    4.9  5  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
  ------ inclusion threshold ------
       0.15   11.1   0.1       0.82    8.6   0.0    2.0  2  Coatomer_WDAD  Coatomer WD associated region


Domain annotation for each model (and alignments):
>> IKI3  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  948.5   0.0  6.4e-289  3.8e-285       1     930 [.       1     950 [.       1     951 [. 0.91

  Alignments for each domain:
  == domain 1  score: 948.5 bits;  conditional E-value: 6.4e-289
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXX......XX.XXXXXXXXX.....XXXXXXXXXXXXXXXXXX CS
        IKI3   1 MrNlkvlseralkpesesesdlkvlasvfdtesdsilivlssteseaaievqrfekds......ev.evlasleaeel..eekkdkivsveyladkeel 90 
                 MrNl ++ +++    + s+  l  +a+++dt ++s++ ++++te +  ie++r + ++      +v e+++s++a+++  + ++d+++s++ ++d+++ 
  KKY23961.1   1 MRNLLNVGHKRAALLDASD--LPPTATAWDTVTNSLITTFGPTEDSPIIELKRIRWKVvgeletAVgETITSWDAPCPlpDLPCDEVLSLHWFSDSSTA 97 
                 9*********999999966..**********************************9999*9*99778999999999878899***************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IKI3  91 vlalasGdillvtvdsdaeekeveivGsiesGieaaawspdeellalvtgeekvvlmtrdfepisetsldaddlkeskhvsvgwGkkeTqfkgkeakaa 189
                 +l+la+Gd++++++++ a+e+ +eivGs+++Gi+aaawsp++ella+vt+++++++mt+df+ ++et+++a+d ++skhvsvgwGkkeTqf+gk+aka 
  KKY23961.1  98 CLVLAGGDLVIIRENPAADEDRIEIVGSVDVGISAAAWSPEQELLAIVTRSNTFLFMTKDFDSVNETTFRAEDTHASKHVSVGWGKKETQFQGKRAKA- 195
                 *************************************************************************************************9. PP

                 XXXXXXXXXX..XXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IKI3 190 ekelrdptlp..vdegkls.lddskvtIsWRGDgeYfavssleaetgerralrvyeregaLdsvsekvdgleeaLaWrPsGsliAstqrkkdksldvvf 285
                    lrdpt+p  vdegkls  dd+++tIsWRGDg+++av+sl   +g+rr +r+++reg Lds+se+vdgle+aL+WrP G+l+As+qrk d+  dvvf
  KKY23961.1 196 ---LRDPTMPehVDEGKLSpSDDHRTTISWRGDGAFVAVNSL--VSGNRRLIRIFTREGVLDSASEPVDGLEGALSWRPAGNLMASVQRKVDS-VDVVF 288
                 ...9**************************************..9999*********************************************.***** PP

                 XXXXXXXXXXXXXXX.XXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XX.XXXXXXXXXXXXXXXX.XXXXXXXXX CS
        IKI3 286 FErNGLrhgefslrlekeeeev....qsLaWsadSevLavrledrvqlwtisNyhWYLKqelrysasegvee.vkWdpekpltLlvltesgkievvdfa 379
                 FErNGLrhg+fslrl++e+        +LaW++dS+vLav + dr+qlwt++Nyh+YLKqel + +++ + + ++W+pe+ l L + +e + i+  ++a
  KKY23961.1 289 FERNGLRHGQFSLRLSPEDMDTwarsIQLAWNSDSTVLAVNYADRIQLWTMGNYHYYLKQELILGERNLSFStLQWHPERSLCLSLQEE-SYISSLEYA 386
                 ***************999987778889************************************9998876556*********9999988.********* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.. CS
        IKI3 380 fetavsetssendvgtvaViDgkklllTplslanvPPPmsareleleaavndvafsksnsktlavllsdgelaiaeldlekakaskepklvsevsknst 478
                 f++  ++t +++d+gt aViDgk l+lTpl+la vPPPm+  e+e+++ ++d+a++++ s  +++l+++g ++++ +dl++++   +  + s+++++  
  KKY23961.1 387 FNLNGGSTVQPHDNGTSAVIDGKILKLTPLKLAGVPPPMALSEVEVDESIIDTAINQKGSL-IFILTRRG-VYVYSWDLASRT--ISTPTRSKFCEH-- 479
                 ***********************************************************97.77777777.999998888776..778888999998.. PP

                 ...XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX...XXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX.XXXXXXXXXXXXX CS
        IKI3 479 asesvevalaklkqlafinddtllvlassaenlsei...llvevddaee.....kvlvssstslekvvlakssadastsvvveta.dGkvlelsaeeek 568
                    s++ ++ +l+q++ + dd  ++l +s e+ s++   +   ++d  +     ++  s s  ++ +++  ++ ++ + v+  +a +G+ ++  a+   
  KKY23961.1 480 ---SIKGHDIALRQITATADDVYYILWNSGESGSHVgraVPPAYEDFGDisasaSLDASFSRITTDIAHEAAWIQSPH-VLRRIAsEGTNFRPTAGTGP 574
                 ...667777789*********999999988555555111333334444443343333444444555555555555554.77777668888866655555 PP

                 XXX...........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.. CS
        IKI3 569 eei...........tklpqlcrdfrvlqveeeeeklllvgLtsrgkLyankkllasdvtSfavtdsfLlfttvshvlkfvdlksevkdlevveksrees 656
                 +             t ++ +++ f+   +++   +++ +gL+++g+Lyan++ la+ +tSf +t  +L+ftt++h lkfv+++ ev+dl+v  ++ e  
  KKY23961.1 575 NDLpwfsimktpekTDFSGPVNGFEPYGNQQ---EVSKFGLSRSGELYANSRVLAKSCTSFVLTPAHLIFTTSNHLLKFVHIT-EVEDLDVPADTPE-- 667
                 5554555544444455555555555554444...569**********************************************.*************.. PP

                 .XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IKI3 657 aderirqvErGsrlVavvpskasvvLqmpRGNLEtiypriLvLaavrkalkakrYkeAfklcrthRidlnllvDydpelFlenveaFvrqvkkvdylnl 755
                  der+r+vErG++lV+v ps+++v LqmpRGNLEtiypr+LvLa++r+++++k+Yk+A+ +cr+h++d n+l Dy+p++F++nv   v+q+kk + ++ 
  KKY23961.1 668 IDERCRAVERGAKLVTVTPSNYAVTLQMPRGNLETIYPRALVLAGIRQHIDKKDYKSAYLACRNHQVDTNILSDYQPDQFMSNVSLIVQQLKKQSRMDD 766
                 6************************************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IKI3 756 FlssLkeeDvtktlYketls..........ktkaskeakakakekdtkesKvnkvcdairkalekeeesekyllailtayvkkeppeleaaLkliaslk 844
                 Fls+L++eDvt tlY++tl+             +sk+ +++  +k + + K n++cda+++a+  +++   ++++++ta+v+k+pp+l aaL+l+++l+
  KKY23961.1 767 FLSKLRDEDVTVTLYQDTLKlqptnqttgtIAVHSKRGHTTSISKWPAKGKTNRICDAFLSAF--ARDPAGRVQNMMTAHVSKHPPDLMAALQLVSKLR 863
                 ***********************9999887666778888888899999***************..79******************************** PP

                 ..XXXXXXXXXXXXXXXX---HHHHHHHHTT-HHHHHHHHHCTT--GGGTHHHHHHHHCS-HHH.HHHHHHHHHT-HHHHHHHHHCS CS
        IKI3 845 eedeeqaeealkyllfLvdvnklYdvALGlYdlelallvAqksqkDPkEYLpfLqeLkkleelr.rkfeIDdyLkryekAlehlvea 930
                 e++ e++++a+ +l+fL dvn+lYdvAL+lYd+ l+llvA++sq+DP+EY+pfL+ L++l++ + r+feIDdyL++y kA+ +l e+
  KKY23961.1 864 ETSIEESDSAIVHLCFLSDVNRLYDVALSLYDIPLTLLVAEQSQRDPREYMPFLERLHALPQEYrRRFEIDDYLRNYPKAIASLYEL 950
                 ************************************************************9988699***************99876 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.95   5.6e+03      37      61 ..      81     105 ..      42     113 .. 0.53
   2 !    6.1   0.0    0.0022        13       2      46 ..     134     181 ..     124     188 .. 0.65
   3 ?    0.8   0.0       0.1   6.1e+02      42      56 ..     218     232 ..     209     256 .. 0.74
   4 ?    1.7   0.0     0.055   3.3e+02      43      58 ..     264     279 ..     243     297 .. 0.82
   5 !    4.4   0.1    0.0078        47      43      59 ..     316     332 ..     265     365 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.95
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdge 61 
                  +  ev sL+W  d +  + + + g 
   KKY23961.1  81 PCDEVLSLHWFSDSSTACLVLAGGD 105
                  3446666666666666555555555 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0022
  ANAPC4_WD40   2 swcptmDLiAlatedgellvfRlngqrvwtl...eedkedsevrsLaW 46 
                  +w+p+ +L+A++t ++  l    ++  v ++   +ed++ s+  s+ W
   KKY23961.1 134 AWSPEQELLAIVTRSNTFLFMTKDFDSVNETtfrAEDTHASKHVSVGW 181
                  688888888888887777776666666666644444444444444555 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.1
  ANAPC4_WD40  42 rsLaWkpdgklLava 56 
                  + ++W+ dg + av 
   KKY23961.1 218 TTISWRGDGAFVAVN 232
                  689**********95 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.055
  ANAPC4_WD40  43 sLaWkpdgklLavays 58 
                  +L+W+p g+l+a +  
   KKY23961.1 264 ALSWRPAGNLMASVQR 279
                  79*********98764 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.0078
  ANAPC4_WD40  43 sLaWkpdgklLavaysd 59 
                  +LaW+ d ++Lav y+d
   KKY23961.1 316 QLAWNSDSTVLAVNYAD 332
                  799**********9998 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00014      0.82     135     180 ..     119     167 ..      92     181 .. 0.76
   2 ?   -0.9   0.0      0.11   6.4e+02     140     175 ..     428     464 ..     425     483 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00014
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXX........ CS
  Coatomer_WDAD 135 qgklvrridvkkvknVvwsddgelvalvs.kdtvyilsynleavee...e 180
                    + ++v ++dv  ++   ws+++el+a+v+ ++t+ +++++ + v+e    
     KKY23961.1 119 RIEIVGSVDVG-ISAAAWSPEQELLAIVTrSNTFLFMTKDFDSVNEttfR 167
                    55789999999.7***************8467788999999988776542 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.11
                    XXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD 140 rridvkk.vknVvwsddgelvalvskdtvyilsynle 175
                    ++++v++ + +   +++g+l+ +++++ vy++s +l+
     KKY23961.1 428 SEVEVDEsIIDTAINQKGSLIFILTRRGVYVYSWDLA 464
                    6788887788888899999999999999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.48
# Mc/sec: 8373.06
//
Query:       KKY23962.1  [L=418]
Description: putative flavohemoprotein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-10   41.1   0.1      4e-10   40.2   0.1    1.5  1  Globin         Globin
    1.4e-07   31.8   0.6    7.1e-06   26.2   0.1    3.0  3  NAD_binding_6  Ferric reductase NAD binding domain
    4.1e-07   30.6   0.0    1.4e-06   28.9   0.0    1.9  2  NAD_binding_1  Oxidoreductase NAD-binding domain
    5.3e-06   26.4   0.2    8.3e-06   25.8   0.2    1.3  1  Protoglobin    Protoglobin
     0.0017   18.7   0.1     0.0072   16.7   0.0    2.0  2  FAD_binding_6  Oxidoreductase FAD-binding domain


Domain annotation for each model (and alignments):
>> Globin  Globin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.1   1.1e-13     4e-10       1     109 [.       7     103 ..       7     104 .. 0.94

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.1e-13
                 HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSGGGGGGSTTTTTTT-HHHHCTSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHCSTT--H CS
      Globin   1 dkalvkaswekvkanaeelgaeilkrlFkaypdtkklFkkfgdlssaedlksspkfkahakkvlaalgeavknldndealkaalkklaarHaergkvdp 99 
                 +++ +ka+++ vk++ + ++++++k++++++p++k++F+ +           +++  ++ +++ +al  +++n+dn ++l ++++  +++Ha+   ++ 
  KKY23962.1   7 QVQIIKATVPVVKEHGNTITTAFYKNMLEENPELKNIFNTA-----------NQANGHQQAALANALYAYASNIDNLGVLSQFVERVCHKHASLY-ITR 93 
                 6788***********************************55...........6788999999*********************************.*** PP

                 HHHHHHHHHH CS
      Globin 100 anFklfgeal 109
                  +++++g+ l
  KKY23962.1  94 TQYDIVGKYL 103
                 ****999865 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.19   6.8e+02     111     138 ..      30      57 ..       6      61 .. 0.73
   2 !   26.2   0.1     2e-09   7.1e-06       4      89 ..     276     358 ..     273     370 .. 0.86
   3 ?    1.2   0.0     0.097   3.5e+02     133     151 ..     374     392 ..     369     396 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.19
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 111 nvkihfgRPnlkevlkdiaskhknssvg 138
                     +++ +  P+lk++++++ ++++ ++ +
     KKY23962.1  30 YKNMLEENPELKNIFNTANQANGHQQAA 57 
                    48899999*******9997777766665 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 2e-09
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   4 vllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvL.neleeeksegnieihiYlTseyeaedasdqlis 89 
                    ++l+++G+Gitp+isil +l    +    +t+ +++i + r s     f  +L ++l + +s+ +  ++ +lTs++ ++   ++ is
     KKY23962.1 276 IVLISAGVGITPMISILNHLQSSPS---QSTRPLHFIHSSRTSTTSLPFLTYLqSSLPSSSSS-SQHLTLFLTSSTFSQHHHSTRIS 358
                    89******************99998...899**********9988888888997777777777.9999*****99988777666555 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.097
                    xxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 133 knssvgvfvCGppklvkev 151
                    +n ++  f+CGp+k++ e 
     KKY23962.1 374 NNPQTEYFICGPEKFMTEK 392
                    56777889******99875 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.3   8.3e+03      39      70 ..      97     123 ..      74     146 .. 0.56
   2 !   28.9   0.0   3.8e-10   1.4e-06       1     106 [.     278     391 ..     278     394 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.3
                    GSTTHHHHHHHHHHCTTEEEEEEEESSCTTTS CS
  NAD_binding_1  39 dllyreeleelakklpgrlkvvavvsreeagw 70 
                    d++ +  + ++++ l+++l     +s+ ++ w
     KKY23962.1  97 DIVGKYLIAAMKQILDDAL-----TSEIQDAW 123
                    4444444444444444422.....23334444 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 3.8e-10
                    EEEEGGGGHHHHHHHHHHHHH.CTTCSEEEEEEEESSGC.GSTTHHHHHHHHHHCTT...EEEEEEEESSCTTTSSSEESSHHHHHHHHHHH...H CS
  NAD_binding_1   1 miagGtGiaPvrsvlrailee.akdktkvvlvyGnrtee.dllyreeleelakklpg...rlkvvavvsreeagweggkgrvqdalleells...l 88 
                    +i++G+Gi+P+ s+l++++   ++ ++++++++  rt+  +l +   l++   + ++   +l+++ ++s  ++  +  +  +   +  + ++   +
     KKY23962.1 278 LISAGVGITPMISILNHLQSSpSQSTRPLHFIHSSRTSTtSLPFLTYLQSSLPSSSSssqHLTLFLTSSTFSQHHHSTRISLLSTIHLNPENdlfV 373
                    79*******************8889************99555444444443322222344677777766666666555655555554444447888 PP

                    SSTTEEEEEECSHHHHHH CS
  NAD_binding_1  89 kkeethvyvCGppgMika 106
                    ++++t +++CGp+++++ 
     KKY23962.1 374 NNPQTEYFICGPEKFMTE 391
                    9*************9975 PP

>> Protoglobin  Protoglobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.2   2.3e-09   8.3e-06      12     111 ..       1     110 [.       1     131 [. 0.78

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 2.3e-09
                  TT-SHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCTS.HHHHHHHCH.....HCHHHHHHHHHHHHHHHCCCSSCCHHHHHHHHHHHHHHC.......H CS
  Protoglobin  12 lglteedlaaLralapliealipavvdafYekllsf.petarifet.....ssqierlkdflksyllklfsgpfdsayveyldkvGkmht.......r 96 
                  +glt e++++++a  p+++++  +++ afY+++l+  pe++ if+t       q + l + l +y +++ +  + s++ve++    + h+       +
   KKY23962.1   1 MGLTPEQVQIIKATVPVVKEHGNTITTAFYKNMLEEnPELKNIFNTanqanGHQQAALANALYAYASNIDNLGVLSQFVERV---CHKHAslyitrtQ 95 
                  799*****************************99988*********999998888889999999998886666777777654...3344433334555 PP

                  CT--HHHHHHCHHHH CS
  Protoglobin  97 lgleprwyiaalglv 111
                   ++  +++iaa+ ++
   KKY23962.1  96 YDIVGKYLIAAMKQI 110
                  555555555555555 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     2e-06    0.0072       4      97 ..     156     263 ..     153     264 .. 0.85
   2 ?   -1.6   0.1      0.99   3.6e+03      11      42 ..     300     331 ..     296     358 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2e-06
                    EEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEECETTCC..EEEEEE.BSSTTECCEEEEEEE--............TT-HHHHHH.HCS-T CS
  FAD_binding_6   4 ltekeevsedtrifrfklpsekqklglpvGqhvflrlkikgea..viRsYtpissenekGelellvkvy............pgGkmsqaL.delki 84 
                    +++k   s+++  f ++  + +    +++Gq++ ++++++g +    R+Y+ +s+     +  + vk+             + G +s++L +e k 
     KKY23962.1 156 IVKKMPESSSITSFYLEPVDGEPLPIFRPGQYISVQMSVPGLKflQSRQYS-LSDRPGLPYYRISVKKEeglnitspnakaHPGYISNVLhKEKKE 250
                    5666667777777777777777777899**********99766115799**.88889999********************999*******777*** PP

                    T-EEEEEEEE-SE CS
  FAD_binding_6  85 gdtleikGPlGkf 97 
                    gd +e++ P+G f
     KKY23962.1 251 GDIIEVSHPQGDF 263
                    ***********98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.99
                    CTTEEEEEEEESTTTS-----TT-EEEEEECE CS
  FAD_binding_6  11 sedtrifrfklpsekqklglpvGqhvflrlki 42 
                    s++tr ++f  +s++++  lp   +++ +l+ 
     KKY23962.1 300 SQSTRPLHFIHSSRTSTTSLPFLTYLQSSLPS 331
                    78899999999999999999988888877773 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 2589.17
//
Query:       KKY23963.1  [L=549]
Description: putative acid phosphatase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-11   43.1   0.0      2e-10   40.6   0.0    1.9  1  His_Phos_2  Histidine phosphatase superfamily (branch 2)


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   1.1e-14     2e-10      62     372 ..     115     406 ..      47     418 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 1.1e-14
                 ....--SSSTTS.B-HHHHHHHHHHHHHHHHHCH..TCCHTTSS--.TTEEEEEESSHHHHHHHHHHHHHHCHCCC---S-TTSTTGGG-TTTTCCCEE CS
  His_Phos_2  62 veklqlilkwggelthaGrkqaeelGrqfrqrYp..lgLlrlhlty.kdlkirassegRviaSAaafakGllglegeltdllskdkdllddsnaakdll 157
                 +  + +++++g+ lt  Gr+++ +lG+++r  Y+  l+++++     + ++ ra+   R ++S +    G++++            +++   +   ++ 
  KKY23963.1 115 SGDVDGVCNLGE-LTDKGRETTLALGERLRHLYVnqLKFMPALISDaDMIYLRATPLPRALESVQQAFWGMYPATA---------RTQSFPPP--TIIT 201
                 5567899999*9.***********************88888766667*************************9999.........22222222..2222 PP

                 EHHHHCCCCHHCTTSHHTCHHHCHHHTGGHCHHHHCHCCCCCHHHHH.HHCHHHCTTEEEE-HHHHHHHHHHHHHHHH....HHCT-TTGGGCTH..HC CS
  His_Phos_2 158 deakkklkelltegaeacpafewpikvakrvdelvkylkedmdenia.krleqlcpgesnllakerwdklercfyekn....kfdiskicdlydemkyd 251
                 +     ++e l +++ +c++f++        +   + ++e+ +  +  k +++ +p+ s+  a + +  l+    ++n        ++ +  + +    
  KKY23963.1 202 RT---PADETLYPNDANCRRFNQ--LSRAFAQRTADRWNETDEMAYLnKLMSKWMPESSPKVAVDSHPRLSGIMDTINstlaHGPETRLPSSFYD--RK 293
                 22...445666667779999999..3333334444444443333333355555577777777777777777666666666766667788888777..79 PP

                 HHHHHHHHHHHHHHHC........TTTCCCCHHHHHHHHHHHHHHHCTSSSEECCS..............CCCECS-SEEEEEE-HHHHHHHHHHCTTT CS
  His_Phos_2 252 alhnrylkdleelyklakvipqEygigpeeklkiGllllnpllkkilndlqrtree..............atperhvrlrlyfthdshiysllnaLglp 336
                 ++   +  ++ee++         y  ++e +    + l+ +++++++  +  t  +              +  e+  r+ ++  hd++++++l+ Lg +
  KKY23963.1 294 LRDIVDKIGVEEWFSG-------YTESQEYRTLGIGSLVGDIVERMTGFIEGTGLTvtevgghdgqlgtgRGGEQSIRFAMSGCHDTTLAAVLSSLGAF 385
                 ***************9.......55555555555567999**************99******************************************* PP

                 TTBTTB.SSS.TTT..HCCCS-CT-EEEEEEEEETC CS
  His_Phos_2 337 eelagedslaaldrlsaspelpymsqivfelyedss 372
                 +    +            +++py s++ +el+++++
  KKY23963.1 386 D----N-----------EKWPPYTSHLAVELFRKPD 406
                 *....3...........69*************9644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 3401.51
//
Query:       KKY23964.1  [L=871]
Description: putative c2h2 transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-19   68.9   0.0    5.1e-19   68.3   0.0    1.2  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   2.8e-23   5.1e-19      38     259 ..     282     558 ..     253     566 .. 0.79

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 2.8e-23
  Fungal_trans  38 llllailalGalfsesetkesnssltsesqefiafplraeili......hedfsspssslwilqsLlllelyektssdralher...hhgvavrlar 125
                   +l+la+ a+Gal+  + + +++  + s++   + ++l+a+         +++ ++ ++ lw +q+ ll  +y  +++d++++     h+   v+lar
    KKY23964.1 282 CLILAMAAIGALYEFEFNDSKELFEASKK--LLGGYLEARRRKtmnraqYNQSEPDTTPLWLVQAMLLNVIYGHNCGDKTSADIasvHCAALVSLAR 376
                   689*********97655555444444433..4555554444444488877778888888*******************7777666967777777*** PP

  Fungal_trans 126 slgLhrnpsyvgkks...........lwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlwesddaseetlvetklsne 211
                      L r  +  +  +            w++w++  e+r+R+ +++F+l  ++ + +++ p l +s+i+l +Pcd+  lwe+d+a +++ ++    + 
    KKY23964.1 377 AAELARPDAIHEE-DflgedehfedsDWVRWKK-VEERKRTLYGVFILSSLLVSAYNHSPALTNSEIRLDIPCDET-LWEADSAIKWKSLGG---QA 467
                   *****99999884.46*****************.**************************99**************.**************5...57 PP

  Fungal_trans 212 eksrkiasfllaLkkilsk......................................iagsllsiekqlqqrdlq.....seklswveele 259
                   + + +  sf +aL+++l                                        +   l+++ ++++qr l      +e +++   +e
    KKY23964.1 468 SAQANSISFAYALSHLLTAsqrqpsfchlgtapfgsgvgsdsinfsdlkpstfgcliLINALHNYIWETRQRHLGpiwtkEETDQMHAHIE 558
                   7777777777777777666666888888888888888888888888888888888887777888888888887776655555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (871 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.24s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 5773.01
//
Query:       KKY23965.1  [L=214]
Description: putative autophagy protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-39  136.7  12.2    1.4e-39  136.4  12.2    1.1  1  ATG16           Autophagy protein 16 (ATG16)
    3.4e-05   22.9   9.2    5.5e-05   22.2   9.2    1.3  1  Spc7            Spc7 kinetochore protein
     0.0024   18.4   8.2     0.0038   17.7   8.2    1.3  1  Fez1            Fez1
     0.0046   16.6   2.4     0.0046   16.6   2.4    2.1  2  HAUS-augmin3    HAUS augmin-like complex subunit 3
     0.0052   17.3   1.5     0.0052   17.3   1.5    2.4  2  APG6_N          Apg6 coiled-coil region
     0.0073   16.3   6.6      0.027   14.4   0.7    2.7  2  DUF2205         Short coiled-coil protein
     0.0097   16.1   2.9        7.3    6.9   0.1    3.5  3  HALZ            Homeobox associated leucine zipper
     0.0098   14.9   5.7      0.013   14.5   5.7    1.1  1  IFT57           Intra-flagellar transport protein 57
  ------ inclusion threshold ------
      0.013   13.1   8.8      0.018   12.6   8.8    1.1  1  DUF3584         Protein of unknown function (DUF3584)
      0.023   12.9   3.7      0.035   12.3   3.7    1.3  1  EzrA            Septation ring formation regulator, EzrA
      0.037   14.4   6.5      0.057   13.8   6.5    1.3  1  YlqD            YlqD protein
      0.038   13.7   7.3      0.087   12.5   7.3    1.5  1  SHE3            SWI5-dependent HO expression protein 3
      0.061   13.4  12.6        0.7   10.0   5.1    2.2  2  Nup54           Nucleoporin complex subunit 54
      0.079   12.7   8.3      0.078   12.7   2.3    2.1  2  DUF4201         Domain of unknown function (DUF4201)
      0.095   13.6  11.8       0.14   13.1  11.0    1.7  1  PRKG1_interact  cGMP-dependent protein kinase interacting dom
       0.12   11.7  12.4          2    7.7   0.5    2.2  2  GAS             Growth-arrest specific micro-tubule binding
       0.21   10.7  12.0       0.49    9.5  12.0    1.5  1  CCDC144C        CCDC144C protein coiled-coil region
       0.24   12.0   8.4        4.5    8.0   0.2    2.3  2  YabA            Initiation control protein YabA
       0.32   11.4   9.5          2    8.8   4.4    2.7  2  CC2-LZ          Leucine zipper of domain CC2 of NEMO, NF-kapp
       0.41   10.9  15.9        4.3    7.7   4.2    3.7  4  ABC_tran_CTD    ABC transporter C-terminal domain
       0.48   10.5  10.7        3.3    7.8  10.5    2.0  2  UPF0242         Uncharacterised protein family (UPF0242) N-te
        0.5   10.8   3.7         14    6.1   1.9    2.6  2  FlaC_arch       Flagella accessory protein C (FlaC)
       0.52   10.6   9.7        0.2   11.9   3.2    2.1  2  KLRAQ           Predicted coiled-coil domain-containing prote
       0.63   10.5  10.7      1e+02    3.5  10.7    2.4  1  ZapB            Cell division protein ZapB
       0.79    9.7   9.1        7.7    6.5   4.6    2.5  2  Prefoldin_2     Prefoldin subunit
        0.9   10.2  15.2        1.9    9.2   5.0    3.5  3  SlyX            SlyX
        1.1    8.5  16.2          3    7.1  13.5    2.0  2  DUF3450         Protein of unknown function (DUF3450)
          2    8.8  10.1        4.4    7.7   7.3    2.2  2  DUF4200         Domain of unknown function (DUF4200)
        2.4    8.2   5.6        6.5    6.8   4.3    2.1  2  DUF1664         Protein of unknown function (DUF1664)
        2.6    7.3   8.5        4.6    6.5   8.5    1.4  1  FAM76           FAM76 protein
        2.8    8.4  12.2        2.2    8.8   4.7    3.4  3  Cep57_MT_bd     Centrosome microtubule-binding domain of Cep5
        2.9    8.2  14.0         25    5.2  12.5    2.3  1  OmpH            Outer membrane protein (OmpH-like)
          6    7.2  14.0        3.5    7.9   1.9    2.7  2  Spc24           Spc24 subunit of Ndc80
        6.4    5.9   6.3         16    4.6   6.2    1.6  1  TMPIT           TMPIT-like protein
        6.6    5.7  10.6         11    5.0   9.5    1.8  2  Atg14           Vacuolar sorting 38 and autophagy-related sub
        7.2    7.0  10.9        4.6    7.7   3.5    2.3  2  TSNAXIP1_N      Translin-associated factor X-interacting N-te
        8.1    6.3  12.3        4.2    7.2   1.9    3.1  2  DivIC           Septum formation initiator


Domain annotation for each model (and alignments):
>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.4  12.2     3e-42   1.4e-39       1     200 []       7     190 ..       7     190 .. 0.91

  Alignments for each domain:
  == domain 1  score: 136.4 bits;  conditional E-value: 3e-42
       ATG16   1 eilaqLreRdarqekafaeliqaynrLldrtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrge 99 
                 e++a+L++Rda  eka +e++ ay rL+drt+al + + + e+a+ ++ s+      + +  +s+s           +  + +a+l + l++++ +r+ 
  KKY23965.1   7 EYIAALDARDAV-EKASHEIYTAYARLADRTAALPSASPSTEEAPPANDSPI-----RPSGIRSPS----------YQAPASTASLAANLSDAQAARSS 89 
                 79*********9.**************************9977765555522.....222222222..........34567789999************ PP

       ATG16 100 laqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklrklekENkeLveRWmkrkaqeAek 198
                 l+++l +l+++ ++  ++l + ++++a l+a++++l+ + +dr+ elr+k+kl+++lqDEl++ +++l+ +  + +kl++EN+ Lv+RWmk+++ eAe+
  KKY23965.1  90 LQSQLSKLQASSATVVAQLDTLRSSHATLSAQHNTLQMRFRDRDSELRGKAKLLENLQDELATTEMELTVQTREMDKLKQENQALVDRWMKKMQGEAEE 188
                 *************************************************************************************************** PP

       ATG16 199 mN 200
                 mN
  KKY23965.1 189 MN 190
                 *9 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   9.2   1.1e-07   5.5e-05     146     262 ..      85     205 ..      75     208 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.1e-07
        Spc7 146 enlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles...idkeeLeelreelaelkaeieekkkelaelqeqleeleeki.eelk 240
                    ++l+++ ++L+++ + + + l+ l++ +a+l++++++lq + ++ +s    + + Le+l++ela+ + e+  + +e+++l+++ ++l +++ ++++
  KKY23965.1  85 AARSSLQSQLSKLQASSATVVAQLDTLRSSHATLSAQHNTLQMRFRDRDSelrGKAKLLENLQDELATTEMELTVQTREMDKLKQENQALVDRWmKKMQ 183
                 55577888888888888888888888888888888888888885555554433468889******************************9888538999 PP

        Spc7 241 eqkseleeeiaeaervleeckg 262
                  + +e++ +++  er +++ kg
  KKY23965.1 184 GEAEEMNVALEGGERRRQRPKG 205
                 9**********99999998775 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   8.2   7.8e-06    0.0038      13     117 ..      88     192 ..      85     211 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 7.8e-06
        Fez1  13 slLKqQLkdsqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleee 111
                 s L +QL   qa  ++ +  + +l+++   l+a+ ++ + + ++ +++l+ k++ le++++el+ ++ e ++   +++kl++e + l ++  ++ + e+
  KKY23965.1  88 SSLQSQLSKLQASSATVVAQLDTLRSSHATLSAQHNTLQMRFRDRDSELRGKAKLLENLQDELATTEMELTVQTREMDKLKQENQALVDRWMKKMQGEA 186
                 6799********************************************************************9999*********99876655444444 PP

        Fez1 112 eaales 117
                 e+++ +
  KKY23965.1 187 EEMNVA 192
                 443222 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   2.4   9.4e-06    0.0046      77     143 ..      70     136 ..      33     139 .. 0.90
   2 !    8.7   6.7    0.0024       1.1      86     159 ..     107     180 ..     104     193 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 9.4e-06
  HAUS-augmin3  77 eesleaLeqelqeLqkekalklkrlnkLqvqaaslqqelrkleeeekeakkklkeaqeelraenaet 143
                    +s+  L++ l+++q  + +++++l+kLq+  a+   +l +l +++ + + + + +q+ +r + +e+
    KKY23965.1  70 PASTASLAANLSDAQAARSSLQSQLSKLQASSATVVAQLDTLRSSHATLSAQHNTLQMRFRDRDSEL 136
                   568999*****************************************************99998776 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0024
  HAUS-augmin3  86 elqeLqkekalklkrlnkLqvqaaslqqelrkleeeekeakkklkeaqeelraenaetnavLqqlteeakqlae 159
                   +l++L++  a +  ++n Lq+   ++ +elr  ++  ++ + +l  +++el+++  e++++ q+ ++ + + ++
    KKY23965.1 107 QLDTLRSSHATLSAQHNTLQMRFRDRDSELRGKAKLLENLQDELATTEMELTVQTREMDKLKQENQALVDRWMK 180
                   7899******************************************************9988887776666555 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   1.5   1.1e-05    0.0052      45     112 ..      69     136 ..       5     141 .. 0.77
   2 ?    5.0   8.6     0.068        33      49     102 ..     122     175 ..     119     200 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.1e-05
      APG6_N  45 qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlel 112
                    ++++l   l++ ++++++l+++L +l++  + + a+l +l++ ++ l ++ +   +++++ + el
  KKY23965.1  69 APASTASLAANLSDAQAARSSLQSQLSKLQASSATVVAQLDTLRSSHATLSAQHNTLQMRFRDRDSEL 136
                 44567888889999999999999999999999999999999999999999999999998888887776 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.068
      APG6_N  49 leeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfw 102
                 ++ l+ ++++ ++e + + + L++l++e +  e el  +++e ++l++e+++ +
  KKY23965.1 122 HNTLQMRFRDRDSELRGKAKLLENLQDELATTEMELTVQTREMDKLKQENQALV 175
                 567788888888888888888888888888888888888888888888887654 PP

>> DUF2205  Short coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.7   5.7e-05     0.027      14      57 ..      83     126 ..      75     131 .. 0.92
   2 ?    3.3   1.4      0.17        81      41      56 ..     159     174 ..     130     183 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.7e-05
     DUF2205  14 erearerLqqqakeLqssLqaLaervdeVkeehdKLesenrfLq 57 
                  + ar  Lq+q  +Lq+s   ++++ d  ++ h  L  +   Lq
  KKY23965.1  83 AQAARSSLQSQLSKLQASSATVVAQLDTLRSSHATLSAQHNTLQ 126
                 5789********************************99988888 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.17
     DUF2205  41 eVkeehdKLesenrfL 56 
                     e dKL+ en+ L
  KKY23965.1 159 VQTREMDKLKQENQAL 174
                 4456889999999987 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2      0.34   1.7e+02      27      40 ..      86      99 ..      73     101 .. 0.77
   2 ?    4.9   0.0     0.064        31       8      25 ..     109     126 ..     106     128 .. 0.79
   3 ?    6.9   0.1     0.015       7.3      20      32 ..     163     175 ..     161     180 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.34
        HALZ 27 enekLkaelqeLke 40
                 + +L+++l +L +
  KKY23965.1 86 ARSSLQSQLSKLQA 99
                5679*******986 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.064
        HALZ   8 dvLKasYdaLksdydsLk 25 
                 d+L++s+  L ++++ L+
  KKY23965.1 109 DTLRSSHATLSAQHNTLQ 126
                 678888888888888876 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.015
        HALZ  20 dydsLkkenekLk 32 
                 + d Lk+en++L 
  KKY23965.1 163 EMDKLKQENQALV 175
                 6799*******96 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   5.7   2.7e-05     0.013     249     353 ..      85     191 ..      69     194 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.7e-05
       IFT57 249 klhedisktlekiesrEkylnsqleellqeyreaqeelsevkekykqlsegvseltrelaeiseelekvkqemeergssmtDg..splvkikkaltklk 345
                    + ++ +l+k+++    +  ql++l + + ++++++++++ +++++ +++  + + l+++++el +++ e+  ++ +m     ++   +   ++k++
  KKY23965.1  85 AARSSLQSQLSKLQASSATVVAQLDTLRSSHATLSAQHNTLQMRFRDRDSELRGKAKLLENLQDELATTEMELTVQTREMDKLkqENQALVDRWMKKMQ 183
                 55678999****************************************************************999999997541133445778899999 PP

       IFT57 346 kEikqmdv 353
                  E ++m+v
  KKY23965.1 184 GEAEEMNV 191
                 99999998 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   8.8   3.7e-05     0.018     242     353 ..      75     189 ..      67     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.7e-05
     DUF3584 242 kvrpeieklqeefeqleslelrLsllkgelkadeerlaekqeevqeakaelkqqlrtledelkeai...delnqelsaakaklaakeselealeeqkkk 337
                 + +++++  q++ ++l+s + +L+  ++ ++a+   l+++ +   ++ + l+ ++r  ++el  ++   ++l+ el +++ +l  + +e+++l++++++
  KKY23965.1  75 SLAANLSDAQAARSSLQSQLSKLQASSATVVAQLDTLRSSHATLSAQHNTLQMRFRDRDSELRGKAkllENLQDELATTEMELTVQTREMDKLKQENQA 173
                 56778889999**************************************************976652227999************************** PP

     DUF3584 338 yedadieklkadldql 353
                   d  + k++ +++++
  KKY23965.1 174 LVDRWMKKMQGEAEEM 189
                 *******999999976 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.7   7.3e-05     0.035      95     205 ..      79     188 ..      71     195 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.3e-05
                 HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTHHHHHHHHHHHHHHHHT--TTTTHHHHHHHHHHHHHHHH----------------HHHH CS
        EzrA  95 kfkkakkklaeleeeldeveekikkileelkelteseeknreeieklkekYrelrkkllanrfsygealeelekqleniekefsefeeltengdyveak 193
                 ++ +a+++ ++l+++l++++++++++ ++l+ l++s+   +++ + l+ ++r+   +l+ + + +++ ++el +   ++  +  e+++l ++++ + ++
  KKY23965.1  79 NLSDAQAARSSLQSQLSKLQASSATVVAQLDTLRSSHATLSAQHNTLQMRFRDRDSELRGKAKLLENLQDELATTEMELTVQTREMDKLKQENQAL-VD 176
                 6778999999**************************************************************999999999999999998887654.55 PP

                 HHHHHHHHHHHH CS
        EzrA 194 eilkkleeeide 205
                 + +kk++ e +e
  KKY23965.1 177 RWMKKMQGEAEE 188
                 555555555555 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   6.5   0.00012     0.057      25     118 ..      83     184 ..      73     196 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.00012
        YlqD  25 lqaqieqldkelqqLefqakrlikeikkqsaq......qieeiqeqvekekserlekkkqllqqleqvqkLelgsevkqgqveslvevkvG..Dnleek 115
                  qa+ + l+++l++L+     +++++ +   +      q++++q++++ + se++ k k l++  +++ + e++  v+ +++++l + ++   D++ +k
  KKY23965.1  83 AQAARSSLQSQLSKLQASSATVVAQLDTLRSShatlsaQHNTLQMRFRDRDSELRGKAKLLENLQDELATTEMELTVQTREMDKLKQENQAlvDRWMKK 181
                 45555666666666666666666666554444666667999**************99999999999****************99877655333777777 PP

        YlqD 116 mqv 118
                 mq 
  KKY23965.1 182 MQG 184
                 765 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   7.3   0.00018     0.087      77     182 ..      75     190 ..      71     199 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..........HHHHHHHHHHHHHHHHSSSXXXXXXXXXXX. CS
        SHE3  77 elkesveelklekkqlkkrlenssaseteleeelerlkvqYdalvdsqkeYkehYqqe..........ieeLkesleklklenekqleelqerissndk 165
                 +l  +  ++++ +  l+ +l +++as++++ ++l+ l+ +  +l + ++  + ++++           +e+L+ +l + + e + q  e+ +  ++n+ 
  KKY23965.1  75 SLAANLSDAQAARSSLQSQLSKLQASSATVVAQLDTLRSSHATLSAQHNTLQMRFRDRdselrgkaklLENLQDELATTEMELTVQTREMDKLKQENQA 173
                 566677777888888888888888888888888888888888888876655544443311111122226777777777777777777777777788888 PP

                 XXXXXXXXXXXXXXXXX CS
        SHE3 166 didtkldsynnkkknle 182
                  +d  ++++++  ++++
  KKY23965.1 174 LVDRWMKKMQGEAEEMN 190
                 88888888888888776 PP

>> Nup54  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   1.1    0.0072       3.5      45      86 ..      80     120 ..      75     124 .. 0.88
   2 ?   10.0   5.1    0.0014       0.7      33      92 ..     124     182 ..     121     201 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0072
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Nup54  45 vaqhrerlkeisdrleeleqkhqletsvrlekakkrhvelsh 86 
                 ++ ++ + ++++++l++l+ + ++++ ++l+++++ h++ls 
  KKY23965.1  80 LSDAQAARSSLQSQLSKLQ-ASSATVVAQLDTLRSSHATLSA 120
                 55667777899********.********************96 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0014
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Nup54  33 dLakRvkaQqkevaqhrerlkeisdrleeleqkhqletsvrlekakkrhvelshRllrll 92 
                  L+ R ++ + e++   + l++++d+l  +e  + +  + +++k+k+++++l  R+++ +
  KKY23965.1 124 TLQMRFRDRDSELRGKAKLLENLQDELATTE-MELTVQTREMDKLKQENQALVDRWMKKM 182
                 699****************************.666666678***************9865 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.3   0.00016     0.078      96     175 ..      76     157 ..      71     159 .. 0.78
   2 ?    9.1   7.7    0.0021         1      64     137 ..      93     173 ..      91     190 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00016
     DUF4201  96 lkkelkekeerlaklrkelykvklerdklrkqneklkqqggllrv..PaLlkDYdktkekveekrksvkkLrrkvkilemrl 175
                 l  +l++ ++ + +l+ +l+k+++  + + +q + l+++++ l++    L   + ++ +++  k k +++L+ ++   em l
  KKY23965.1  76 LAANLSDAQAARSSLQSQLSKLQASSATVVAQLDTLRSSHATLSAqhNTLQMRFRDRDSELRGKAKLLENLQDELATTEMEL 157
                 5667888888888888888888888888888888888888887641145777799999999999999999999999988876 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0021
     DUF4201  64 eLkrlkkkttktvhalthlkeklh.......mleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggl 137
                 +L++l+ ++++ v +l +l+           +l++ ++++ +el+ k + l+ l++el  +++e +   ++ +klkq+++ 
  KKY23965.1  93 QLSKLQASSATVVAQLDTLRSSHAtlsaqhnTLQMRFRDRDSELRGKAKLLENLQDELATTEMELTVQTREMDKLKQENQA 173
                 6999999999999999999998886777777888888899999999999999************************99887 PP

>> PRKG1_interact  cGMP-dependent protein kinase interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1  11.0   0.00028      0.14       8      94 ..      82     175 ..      75     184 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00028
  PRKG1_interact   8 eekeenerLkreLeelekelselkseleklkqqrqesvskrssllelekrerrslerkis....eleeelkele.eLr...aenqrLkdEngALi 94 
                     ++++ ++ L+++L++l+ + +++ ++l++l+++ +  +s++ ++l+++ r+r s  r  +    +l++el ++e eL    +e ++Lk+En+AL+
      KKY23965.1  82 DAQAARSSLQSQLSKLQASSATVVAQLDTLRSS-HATLSAQHNTLQMRFRDRDSELRGKAklleNLQDELATTEmELTvqtREMDKLKQENQALV 175
                     67788999*********************9966.4556666666666555554443333312224555553332133344488999999999998 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.5    0.0042         2      57     117 ..      74     131 ..      65     140 .. 0.71
   2 ?    7.7   5.7    0.0042         2      26      85 ..     141     201 ..     136     204 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0042
         GAS  57 krlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfek 117
                  +l  +L  a++ +  L+ ql + +    s + + a+l +l +   +l+ +h+ l++rf  
  KKY23965.1  74 ASLAANLSDAQAARSSLQSQLSKLQA---SSATVVAQLDTLRSSHATLSAQHNTLQMRFRD 131
                 56777778888888888877766555...55567777777777778888888888887764 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0042
         GAS  26 elIkslKeeieelkkkeernekelseisqenkrlkep.LkkaeeeveeLrkqlknyekdkq 85 
                 +l ++l +e+++ + + + +++e+++++qen+ l++  +kk + e ee++ +l+  e+ +q
  KKY23965.1 141 KLLENLQDELATTEMELTVQTREMDKLKQENQALVDRwMKKMQGEAEEMNVALEGGERRRQ 201
                 5677888999999999999999999999999998876478889999999998888777766 PP

>> CCDC144C  CCDC144C protein coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  12.0     0.001      0.49     125     217 ..      87     183 ..      69     193 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.001
    CCDC144C 125 rdewlrlqdklnfdvsnlkdknevLsqqLskaeskansLenelhetrdaLrektlllesvqrdlsqaqc....qikeleqmyqneeekvnkyiakqe 217
                 r   ++   kl+   +++  + ++L    ++  ++ n+L++ +++   +Lr k+ lle++q +l  ++     q++e+++  q++++ v++ ++k +
  KKY23965.1  87 RSSLQSQLSKLQASSATVVAQLDTLRSSHATLSAQHNTLQMRFRDRDSELRGKAKLLENLQDELATTEMeltvQTREMDKLKQENQALVDRWMKKMQ 183
                 33333333444555555555555566666667788999**************************998753333899***************999965 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.2    0.0093       4.5       5      44 ..      89     128 ..      85     142 .. 0.77
   2 ?    6.1   4.0     0.036        17      17      65 ..     143     191 ..     134     203 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0093
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA   5 elfdkleeleeqleelleeleelkeelaelleenaeLele 44 
                 +l ++l++l+ + ++++++l++l+++ a+l  ++++L++ 
  KKY23965.1  89 SLQSQLSKLQASSATVVAQLDTLRSSHATLSAQHNTLQMR 128
                 5778888899999999999999999999998888888886 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.036
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXX CS
        YabA  17 leelleeleelkeelaelleenaeLeleneklrerleeeekkekekkke 65 
                 le+l++el++ ++el+  + e ++L+ en+ l +r  ++ + e+e+ + 
  KKY23965.1 143 LENLQDELATTEMELTVQTREMDKLKQENQALVDRWMKKMQGEAEEMNV 191
                 6788899999999999999999999999999999986666666655554 PP

>> CC2-LZ  Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.2     0.077        37      17      52 ..      74     109 ..      66     131 .. 0.76
   2 ?    8.8   4.4    0.0041         2      13      46 ..     140     173 ..     128     194 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.077
      CC2-LZ  17 eeLkaqlqaaeealaakqeeidelkeeikkkeeele 52 
                  +L a+l++a+ a ++ q+++ +l+++ +    +l+
  KKY23965.1  74 ASLAANLSDAQAARSSLQSQLSKLQASSATVVAQLD 109
                 678999999999999999999999988776655554 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0041
      CC2-LZ  13 keeieeLkaqlqaaeealaakqeeidelkeeikk 46 
                  + +e+L+ +l + e  l+ + +e+d+lk+e++ 
  KKY23965.1 140 AKLLENLQDELATTEMELTVQTREMDKLKQENQA 173
                 67799*************************9875 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.096        46      20      53 ..       5      42 ..       4      49 .. 0.70
   2 ?    5.4   0.4     0.045        22      25      60 ..      74     111 ..      68     131 .. 0.74
   3 ?    3.7   0.4      0.15        73      23      63 ..     121     156 ..     113     159 .. 0.65
   4 ?    7.7   4.2    0.0089       4.3      25      65 ..     144     179 ..     137     180 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.096
  ABC_tran_CTD 20 LEeeiaelea....eladpelysdpeklaelsaeleel 53
                  LEe ia+l+a    e a+ e+y+ +++la+ +a l  +
    KKY23965.1  5 LEEYIAALDArdavEKASHEIYTAYARLADRTAALPSA 42
                  56666666665555557789999999999999988765 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.045
  ABC_tran_CTD  25 aeleaeladpelysdp..eklaelsaeleeleaeLeel 60 
                   a+l a l+d++    +   +l++l+a  +++ a+L++l
    KKY23965.1  74 ASLAANLSDAQAARSSlqSQLSKLQASSATVVAQLDTL 111
                   67778888888775555677888888888888888876 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.15
  ABC_tran_CTD  23 eiaeleaeladpelysdpeklaelsaeleeleaeLeelyer 63 
                   +  +l+ ++ d +      +l    + le+l++eL++ +++
    KKY23965.1 121 QHNTLQMRFRDRD-----SELRGKAKLLENLQDELATTEME 156
                   5555555555555.....66777777778888888777664 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0089
  ABC_tran_CTD  25 aeleaeladpelysdpeklaelsaeleeleaeLeelyerWe 65 
                   ++l++ela  e      +l+  ++e+++l++e ++l +rW+
    KKY23965.1 144 ENLQDELATTE-----MELTVQTREMDKLKQENQALVDRWM 179
                   55566666554.....89**********************8 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.3     0.058        28     132     187 ..      82     137 ..      68     142 .. 0.65
   2 ?    7.8  10.5    0.0068       3.3      81     136 ..     122     189 ..      87     202 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.058
     UPF0242 132 dfeelkleleeqLaekqellqeyqetieeqrsvlekrqdqieqLeskVrDlnyEik 187
                 d ++ +  l++qL + q    +  +++  +rs+     +q + L+ + rD+  E++
  KKY23965.1  82 DAQAARSSLQSQLSKLQASSATVVAQLDTLRSSHATLSAQHNTLQMRFRDRDSELR 137
                 55555566666666666666666666666666666667777888888888887776 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0068
     UPF0242  81 d...........eglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiae.dfeel 136
                              +l+ k++ le+lq+e    + el  +++e+ +lk+enq L  +  +  + + ee+
  KKY23965.1 122 HntlqmrfrdrdSELRGKAKLLENLQDELATTEMELTVQTREMDKLKQENQALVDRWMKKMQgEAEEM 189
                 22233333444488999999*******************************99876544333255555 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.15        73       4      30 ..      89     115 ..      75     131 .. 0.76
   2 ?    6.1   1.9      0.03        14       3      34 ..     144     175 ..     143     193 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.15
   FlaC_arch   4 elEnklsklsteletvkkeneelsksv 30 
                 +l+++lskl+ + +tv ++++ l++s 
  KKY23965.1  89 SLQSQLSKLQASSATVVAQLDTLRSSH 115
                 477788888887777777777776664 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.03
   FlaC_arch   3 delEnklsklsteletvkkeneelsksveelk 34 
                 ++l+ +l  +++el+   +e+++l+++ + l 
  KKY23965.1 144 ENLQDELATTEMELTVQTREMDKLKQENQALV 175
                 78999**********999****9999988775 PP

>> KLRAQ  Predicted coiled-coil domain-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.7      0.31   1.5e+02      23      78 ..      82     137 ..      71     142 .. 0.79
   2 ?   11.9   3.2   0.00041       0.2      29      74 ..     144     190 ..     136     208 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.31
       KLRAQ  23 eEqskeaslkeelkekeqslrkseqEvdsLtFrNkqLekrvellqeeleveekkvk 78 
                 + q+  +sl+ +l + ++s  ++ + +d+L      L  + ++lq  ++ +  +++
  KKY23965.1  82 DAQAARSSLQSQLSKLQASSATVVAQLDTLRSSHATLSAQHNTLQMRFRDRDSELR 137
                 67888999999999999999999999999999999999999999988776654444 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00041
       KLRAQ  29 aslkeelkekeqslrkseqEvdsLtFrNkqLekr.vellqeelevee 74 
                 ++l++el + e +l+ ++ E+d L+  N+ L+ r ++ +q e e+ +
  KKY23965.1 144 ENLQDELATTEMELTVQTREMDKLKQENQALVDRwMKKMQGEAEEMN 190
                 689****************************9775789999887654 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5  10.7      0.21     1e+02       5      61 ..      93     177 ..      89     194 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.21
        ZapB   5 lLeqLEskiqkaidtitlLqmeieeLkeeneelkeenrele............................eeneqlkeereawqer 61 
                 +L++L+++  + + ++++L+   + L +++++l+ + r                               +e ++lk+e +a+ +r
  KKY23965.1  93 QLSKLQASSATVVAQLDTLRSSHATLSAQHNTLQMRFRDRDselrgkakllenlqdelattemeltvqtREMDKLKQENQALVDR 177
                 7888888888888888888888888888887777666555555556666666777777777777778887888888777776555 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.046        22      60      99 ..      83     122 ..      71     129 .. 0.60
   2 ?    6.5   4.6     0.016       7.7      60     105 ..     139     184 ..     136     185 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.046
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  60 keevkeeLeerketlekeiktlekqleklekeleelkeel 99 
                   + +++ L+ ++ +l++ ++t+  ql++l+   + l +++
   KKY23965.1  83 AQAARSSLQSQLSKLQASSATVVAQLDTLRSSHATLSAQH 122
                  4455555566666666666666666666555555555555 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.016
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTS- CS
  Prefoldin_2  60 keevkeeLeerketlekeiktlekqleklekeleelkeelqkklqq 105
                  k++++e+L+++++t e+e++  +++++kl++e + l +  +kk+q+
   KKY23965.1 139 KAKLLENLQDELATTEMELTVQTREMDKLKQENQALVDRWMKKMQG 184
                  6788899999999999999999999999999988888888888775 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.33   1.6e+02      34      65 ..      19      51 ..       6      51 .. 0.67
   2 ?    3.2   1.0      0.29   1.4e+02      29      55 ..      90     116 ..      74     140 .. 0.61
   3 ?    9.2   5.0    0.0039       1.9      16      53 ..     147     185 ..     130     203 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.33
                HHHHHHHHHHHHT-XXXXXXXX.XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessg.aseaeeepPP 65
                ++  +++   + rl+++ ++ + as++ ee PP
  KKY23965.1 19 EKASHEIYTAYARLADRTAALPsASPSTEEAPP 51
                556666666677777777666634455777777 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX  29 qqqqidrlqrqlrllaerlkeleessg 55 
                  q q+++lq+  + ++ +l +l++s++
  KKY23965.1  90 LQSQLSKLQASSATVVAQLDTLRSSHA 116
                 345555555555555555544444433 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0039
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-.XXXXXX CS
        SlyX  16 edtieeLndvvaeqqqqidrlqrqlrllaerl.kelees 53 
                 +d + +   +++ q +++d+l+++ ++l++r  k+++ +
  KKY23965.1 147 QDELATTEMELTVQTREMDKLKQENQALVDRWmKKMQGE 185
                 444444556789999999999999999999974444333 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  13.5    0.0062         3      16     105 ..      71     164 ..      62     172 .. 0.82
   2 ?    0.9   2.4      0.48   2.3e+02      24      57 ..     160     193 ..     149     202 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0062
     DUF3450  16 atldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqei....asleeqieeieeierelvpllekm 105
                 a+ +++ +  + a+aa+++ q++ +kl+  +++++a++ +l++  + l+++ + l+   ++ ++e+    + le+ ++e+  +e+el+   ++m
  KKY23965.1  71 ASTASLAANLSDAQAARSSLQSQLSKLQASSATVVAQLDTLRSSHATLSAQHNTLQMRFRDRDSELrgkaKLLENLQDELATTEMELTVQTREM 164
                 5667788889999*******************************************99998888772221456777788888999998877776 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.48
     DUF3450  24 eaekavaaaaqsqkkidklddekqellaeyralk 57 
                 ++++  + +++ q+ +d++ ++ q  ++e++ + 
  KKY23965.1 160 QTREMDKLKQENQALVDRWMKKMQGEAEEMNVAL 193
                 4556667777777777777777777777776554 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       1.2   5.7e+02      80     101 ..      78      99 ..      71     111 .. 0.62
   2 ?    7.7   7.3     0.009       4.4       8      74 ..     122     188 ..     117     192 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 1.2
     DUF4200  80 aeikklkaeietlkseieklee 101
                 a + +++a  + l+s+++kl++
  KKY23965.1  78 ANLSDAQAARSSLQSQLSKLQA 99 
                 4444555555566666666655 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.009
     DUF4200   8 mfevqealeakkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerkl 74 
                 +  +q+       e++ + ++l++ ++el  +e el  +  + dk  +en+a   r +kk++ e+++
  KKY23965.1 122 HNTLQMRFRDRDSELRGKAKLLENLQDELATTEMELTVQTREMDKLKQENQALVDRWMKKMQGEAEE 188
                 56678888889999999*********************************************99876 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1      0.21     1e+02      77     116 ..      82     121 ..      72     137 .. 0.51
   2 ?    6.8   4.3     0.013       6.5      39     113 ..      97     174 ..      95     185 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.21
     DUF1664  77 eqkeiskeikeevtevredlseigedvesvkeaveglesk 116
                 + +++ +++++++++++   +++  +++++++   +l ++
  KKY23965.1  82 DAQAARSSLQSQLSKLQASSATVVAQLDTLRSSHATLSAQ 121
                 4444444555555555555555444444444444444333 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.013
     DUF1664  39 lsdavesvskqleqvs...eslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegl 113
                 l+   ++v  ql+++    ++l+a+ + L+ r    d++l   +++ +++++e+++ + +l+   ++++++k+  + l
  KKY23965.1  97 LQASSATVVAQLDTLRsshATLSAQHNTLQMRFRDRDSELRGKAKLLENLQDELATTEMELTVQTREMDKLKQENQAL 174
                 5666778888888876444789999999*************************9999999999999999998766555 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   8.5    0.0095       4.6     197     292 ..      95     186 ..      42     194 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0095
       FAM76 197 aeekesnetskksldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkitelkaellekekelreklkelekeakekieklekkirellkev 292
                 ++ ++s+ t  ++ld+  s h    + L  + ++l+ + + +d+el  k k + +l+ el ++e el  + +e++k  +e++  +++ +++++ e 
  KKY23965.1  95 SKLQASSATVVAQLDTLRSSH----ATLSAQHNTLQMRFRDRDSELRGKAKLLENLQDELATTEMELTVQTREMDKLKQENQALVDRWMKKMQGEA 186
                 233333333333444444444....5688888999999999***********************99999999999998888887777777777665 PP

>> Cep57_MT_bd  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1         2   9.6e+02      33      44 ..      89     100 ..      76     117 .. 0.59
   2 ?    2.3   0.7      0.49   2.4e+02      24      42 ..     108     126 ..      85     140 .. 0.60
   3 ?    8.8   4.7    0.0046       2.2      14      43 ..     140     169 ..     133     197 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 2
  Cep57_MT_bd  33 elaaqynaldps 44 
                   l++q+ +l++s
   KKY23965.1  89 SLQSQLSKLQAS 100
                  444444444433 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.49
  Cep57_MT_bd  24 fehlklelqelaaqynald 42 
                  ++ l+  +++l+aq n l+
   KKY23965.1 108 LDTLRSSHATLSAQHNTLQ 126
                  4445555555555555555 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0046
  Cep57_MT_bd  14 aevlkeLedEfehlklelqelaaqynaldp 43 
                  a++l++L+dE++   +el+   +++ +l +
   KKY23965.1 140 AKLLENLQDELATTEMELTVQTREMDKLKQ 169
                  799*******************99999874 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  12.5     0.052        25      13      99 ..     114     183 ..      69     197 .. 0.42

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.052
                 HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  13 espegkaaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqellkpildkin 99 
                 ++    a  + l+  f++++ el+ k+k l++lq+el                ++ e el   q ++  +l++++q+l+++ ++k++
  KKY23965.1 114 SHATLSAQHNTLQMRFRDRDSELRGKAKLLENLQDEL----------------ATTEMELTV-QTREMDKLKQENQALVDRWMKKMQ 183
                 2222222223333344444444444444444444444................333333333.333334444444444444444443 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   1.9    0.0073       3.5       8      44 ..      75     114 ..      71     136 .. 0.70
   2 ?    3.2   5.3      0.21        99       6      44 ..     136     177 ..     131     195 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0073
       Spc24   8 riakelsdleselesleselaelkeeleeleeesee...k 44 
                 ++a +lsd++++ +sl+s+l++l++  +++  +      +
  KKY23965.1  75 SLAANLSDAQAARSSLQSQLSKLQASSATVVAQLDTlrsS 114
                 6788899999999999999999998888887777765321 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.21
       Spc24   6 kfriakelsdleselesleselaelkeeleeleeesee...k 44 
                 +   ak l++l++el   e el+   +e+++l++e+++   +
  KKY23965.1 136 LRGKAKLLENLQDELATTEMELTVQTREMDKLKQENQAlvdR 177
                 555677788888888888888888888888888877775440 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   6.2     0.034        16       6      79 ..      89     163 ..      72     193 .. 0.53

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.034
       TMPIT   6 elekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeee.eveelkeelkerk 79 
                 +l++++ +l+++  ++ ++l++l ++  ++s + ++ + r ++ +s+l+   k +++ ++e +++e++ ++++r+
  KKY23965.1  89 SLQSQLSKLQASSATVVAQLDTLRSSHATLSAQHNTLQMRFRDRDSELRGKAKLLENLQDElATTEMELTVQTRE 163
                 555666666666666666666666666666666666666666666666554444332222212222222222222 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.5      0.62     3e+02      95     139 ..      16      60 ..      11      99 .. 0.47
   2 ?    5.0   9.5     0.022        11      33     141 ..      82     183 ..      66     203 .. 0.58

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.62
       Atg14  95 keieekkkklaklsdklkkRrsdleslqneleerrkkqiaklqda 139
                 +++e++++++ +  + l++R++ l s++ + ee+  +  + +  +
  KKY23965.1  16 DAVEKASHEIYTAYARLADRTAALPSASPSTEEAPPANDSPIRPS 60 
                 566666666666666666666666666666665544433333333 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.022
       Atg14  33 klksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk........kRrsdleslqn 123
                 + ++++ sl+++++k+ ++            +  a+l++l+s +a l+++ ++l+++ + +++e++ k k l+ l+d+l+        + r+      +
  KKY23965.1  82 DAQAARSSLQSQLSKLQASSA----------TVVAQLDTLRSSHATLSAQHNTLQMRFRDRDSELRGKAKLLENLQDELAttemeltvQTREM-----D 165
                 445555555555554333333..........55667777777777777777777777777777777777777777777775555444422222.....3 PP

       Atg14 124 eleerrkkqiaklqdaik 141
                 +l+++ ++++++  ++++
  KKY23965.1 166 KLKQENQALVDRWMKKMQ 183
                 444444444444444444 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.1      0.13        61      56     106 ..      78     128 ..      75     131 .. 0.84
   2 ?    7.7   3.5    0.0096       4.6      60     106 ..     131     177 ..     125     182 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.13
  TSNAXIP1_N  56 ahllesqreaqylkaklktlsessdkraleleekreelralekeskallee 106
                 a l + q +   l+++l+ l++ss+  + +l+  r +  +l +++++l+ +
  KKY23965.1  78 ANLSDAQAARSSLQSQLSKLQASSATVVAQLDTLRSSHATLSAQHNTLQMR 128
                 567888888888899**9999999988889999999999999999998876 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0096
  TSNAXIP1_N  60 esqreaqylkakl.ktlsessdkraleleekreelralekeskallee 106
                 ++ +e++ + akl + l+++ + + +el+ +++e+ +l++e++al ++
  KKY23965.1 131 DRDSELRGK-AKLlENLQDELATTEMELTVQTREMDKLKQENQALVDR 177
                 444455444.555599999999*********************99776 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   1.6     0.058        28      28      56 ..      89     117 ..      71     152 .. 0.64
   2 ?    7.2   1.9    0.0087       4.2      20      44 ..     151     175 ..     140     186 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.058
                 HHHHHHHHHHHHHHHHHHHHCC-XXXXXX CS
       DivIC  28 alqaelaklkaeneeLeaevkdLksdedy 56 
                  lq +l kl+a  +   a+++ L+s+ + 
  KKY23965.1  89 SLQSQLSKLQASSATVVAQLDTLRSSHAT 117
                 44444444444444444444444443333 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0087
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  20 kqlkqeiaalqaelaklkaeneeLe 44 
                   ++ e++ +++e++klk+en++L 
  KKY23965.1 151 ATTEMELTVQTREMDKLKQENQALV 175
                 567789999*************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1584  (0.0883485); expected 358.6 (0.02)
Passed bias filter:                      610  (0.0340231); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              37  [number of targets reported over threshold]
# CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.53
# Mc/sec: 1225.41
//
Query:       KKY23966.1  [L=205]
Description: putative rab small monomeric gtpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-57  191.2   0.0      1e-56  191.0   0.0    1.0  1  Ras             Ras family
    7.4e-32  110.1   0.0    1.1e-31  109.6   0.0    1.2  1  Roc             Ras of Complex, Roc, domain of DAPkinase
    8.3e-13   48.2   0.0    9.8e-13   47.9   0.0    1.1  1  Arf             ADP-ribosylation factor family
    2.6e-07   30.7   0.0    4.1e-07   30.1   0.0    1.3  1  MMR_HSR1        50S ribosome-binding GTPase
    6.9e-06   25.6   0.0    8.6e-06   25.3   0.0    1.2  1  Gtr1_RagA       Gtr1/RagA G protein conserved region
    1.3e-05   24.8   0.0    0.00068   19.2   0.0    2.2  2  GTP_EFTU        Elongation factor Tu GTP binding domain
    6.8e-05   22.8   0.1      0.004   17.1   0.1    2.4  3  RsgA_GTPase     RsgA GTPase
     0.0042   16.9   0.2       0.14   11.9   0.0    2.1  2  ATP_bind_1      Conserved hypothetical ATP binding protein
     0.0057   16.1   0.0     0.0071   15.8   0.0    1.3  1  SRPRB           Signal recognition particle receptor beta sub
      0.006   16.3   0.1       0.14   11.9   0.0    2.1  2  PduV-EutP       Ethanolamine utilisation - propanediol utilis
     0.0069   16.0   0.0       0.02   14.5   0.0    1.7  2  cobW            CobW/HypB/UreG, nucleotide-binding domain
     0.0071   16.3   0.0      0.016   15.2   0.0    1.8  1  AAA_5           AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
       0.01   15.2   0.1      0.035   13.4   0.0    1.9  2  Septin          Septin
       0.01   16.1   0.0      0.019   15.3   0.0    1.5  1  AAA_22          AAA domain
      0.018   14.6   0.1      0.031   13.8   0.1    1.3  1  AAA_7           P-loop containing dynein motor region
       0.02   14.6   0.0      0.037   13.8   0.0    1.5  1  AAA_24          AAA domain
       0.02   15.3   0.0      0.026   14.9   0.0    1.6  1  AAA_16          AAA ATPase domain
      0.063   13.2   0.4       0.11   12.4   0.1    1.5  2  ATPase_2        ATPase domain predominantly from Archaea
      0.088   12.7   0.0       0.15   11.9   0.0    1.4  1  NTPase_1        NTPase
       0.11   12.0   0.0       0.16   11.4   0.0    1.3  1  TniB            Bacterial TniB protein
       0.11   12.4   0.0       0.18   11.7   0.0    1.3  1  NACHT           NACHT domain
       0.12   12.7   0.0       0.18   12.1   0.0    1.4  1  Glyco_hydro_75  Fungal chitosanase of glycosyl hydrolase grou
       0.15   11.2   0.2       0.26   10.4   0.0    1.5  2  NB-ARC          NB-ARC domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.0   0.0   1.3e-59     1e-56       1     161 [.      10     176 ..      10     177 .. 0.98

  Alignments for each domain:
  == domain 1  score: 191.0 bits;  conditional E-value: 1.3e-59
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 K++++Gds+vGKtsl++++v++kF+++y++Tig+df+tke+ vd++ v++++wDTAGqe+f+sl  ++yr+a++++lvyd+++++sf+++++w +e+  
  KKY23966.1  10 KVIILGDSGVGKTSLMNQYVNKKFSNSYKATIGADFLTKEVLVDDRLVTMQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFDTLDSWRDEFLI 108
                 99***********************************************************************************************99 PP

                 HST....TTSEEEEEEETTTGGG.G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 100 vae....envpivLvGnKvDlee.kravsteegeelakelg.lkfletSAktnenveeafeellreil 161
                 +a+    e++p+v++GnKvDlee kr++s +++ ++++++g ++++etSAk++ nve+afe ++r++l
  KKY23966.1 109 QASprdpESFPFVVLGNKVDLEEsKRMISSKRAMTFCQSKGgIPYFETSAKEAINVEQAFEVIARNAL 176
                 999999999************98799**************99**********************9876 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   0.0   1.4e-34   1.1e-31       1     120 []      10     129 ..      10     129 .. 0.86

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 1.4e-34
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 Kv+++GdsgvGKtsl++++v++kfs+++k+tig+dfltkev  +     d+  + v++++WDtaGqerf+sl   ++r+a++++lvyd   s+s+++l+
  KKY23966.1  10 KVIILGDSGVGKTSLMNQYVNKKFSNSYKATIGADFLTKEVL-V-----DD--RLVTMQLWDTAGQERFQSLGVAFYRGADCCVLVYDvnnSKSFDTLD 100
                 9**************************************983.2.....23..4699*******************************8666678999* PP

                 HHHHHHHHHCS....SS.-EEEEEE-TTT CS
         Roc  97 eWlkelkkvag....ks.pvilvgnkiDl 120
                 +W +e+  +a+    +s p++++gnk+Dl
  KKY23966.1 101 SWRDEFLIQASprdpESfPFVVLGNKVDL 129
                 ***9986554322223358999*****95 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   1.3e-15   9.8e-13      14     172 ..       8     172 ..       1     178 [. 0.77

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 1.3e-15
                 EEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHH CS
         Arf  14 elrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkal 107
                  l++++lG  + GKt +++++ ++++++  + Tig  f ++e+ +  + +++++wD  Gqe+  +l   +++  d  + v D+++++ +++  +  +++
  KKY23966.1   8 LLKVIILGDSGVGKTSLMNQYVNKKFSNsYKATIGadFLTKEVLVddRLVTMQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFDTLDSWRDEF 106
                 479**********************9985789998334567776644679*********************************9999888877766666 PP

                 CTSGCCT...TSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHH CS
         Arf 108 leeeelk...evallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewls 172
                 l +   +   + +++vl+NK Dl+e+      ++  +++  ++k  +  +++sa +  ++++++e ++
  KKY23966.1 107 LIQASPRdpeSFPFVVLGNKVDLEESKRMISSKR--AMTFCQSKGGIPYFETSAKEAINVEQAFEVIA 172
                 655544433389************9876554444..44444555666667777777777777777665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   5.3e-10   4.1e-07       1      93 [.      10      99 ..      10     126 .. 0.70

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 5.3e-10
                EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT..EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT.TTCSHHH CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg..keielvDtpGliegaseekglgkaflaleeadlillvvdas.eeklkpl 93
                +v+i+G + vGK++L+n+ +++k   s k+    d  +++v +++    ++l+Dt+G  e   + ++lg af +   ad  +lv d++ +++++ l
  KKY23966.1 10 KVIILGDSGVGKTSLMNQYVNKKFSNSYKATIGADFLTKEVLVDDrlVTMQLWDTAG-QE---RFQSLGVAFYR--GADCCVLVYDVNnSKSFDTL 99
                699******************98877777777777766666655535789*******.54...44489999996..57777777776622233333 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.1e-08   8.6e-06       1     131 [.      10     136 ..      10     171 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.1e-08
   Gtr1_RagA   1 kvLLmGksgsGKts.mrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 kv+++G sg GKts m++ + ++++     ++ga   +++  v   + +t++lwD  Gqe+f+   +   +     ++ vl+   Dv++++  ++l+++
  KKY23966.1  10 KVIILGDSGVGKTSlMNQYVNKKFSNSYKATIGADFLTKEVLV-DDRLVTMQLWDTAGQERFQSLGVAFYR---GADCCVLV--YDVNNSKSFDTLDSW 102
                 89************66788888888888888888777666666.46778*************988644433...34555555..599988877778777 PP

   Gtr1_RagA  99 ke.ilealrqyspe.akvfvlihKmDliqederee 131
                 ++  l +++  +pe   + vl +K+Dl ++ +r+ 
  KKY23966.1 103 RDeFLIQASPRDPEsFPFVVLGNKVDLEES-KRMI 136
                 64155566666665156777889**99743.3333 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.042        33       4      27 ..       9      32 ..       6      60 .. 0.73
   2 !   19.2   0.0   8.7e-07   0.00068      71     190 ..      58     173 ..      39     180 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.042
                EEEEEEESTTSSHHHHHHHHHHHT CS
    GTP_EFTU  4 rnigiighvDhGKtTLtdrLlykt 27
                ++++i+g+   GKt+L+ + + k+
  KKY23966.1  9 LKVIILGDSGVGKTSLMNQYVNKK 32
                6899*************9877544 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 8.7e-07
                 EEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTBSTHHHHHHHH.....HHHHTTTE...EEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    GTP_EFTU  71 linliDtPGHvdFskevirglrvlDgavlvvdaveGvepqteevlr.....lalkegvp...iivfiNKmDrlkaelkeiveevkqklsrkeeklekyg 161
                 +++l Dt G + F++   + +r +D++vlv d+++     t   +r     +a+ ++ +   ++v+ NK+D  +++   + + +  ++          +
  KKY23966.1  58 TMQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFDTLDSWRdefliQASPRDPEsfpFVVLGNKVDLEESKRMISSKRAM-TF---------CQ 146
                 57889*****************************996666655554222227765443344499999****76433322222222.35.........23 PP

                 HTTTTTEEEEEEBTTTTBTHHHHHHHHHH CS
    GTP_EFTU 162 ekgekevpvvfgSalkgegvktllealve 190
                  kg   +p + +Sa+++ +v++ +e++ +
  KKY23966.1 147 SKG--GIPYFETSAKEAINVEQAFEVIAR 173
                 333..588888888888888888877765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   5.1e-06     0.004     102     122 ..      11      31 ..       4      71 .. 0.88
   2 ?   -1.7   0.0       3.1   2.4e+03      70      96 ..      76     102 ..      55     111 .. 0.75
   3 ?    3.6   0.0     0.072        56      47      97 ..     118     171 ..      81     177 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5.1e-06
                  EEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe 122
                  ++++G SGvGK++L+n+ +++
   KKY23966.1  11 VIILGDSGVGKTSLMNQYVNK 31 
                  6899************99876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.1
                  HHHHHTTSEEEE--TTTHTTHHHHHHH CS
  RsgA_GTPase  70 eelealgyevllvsaktkegleelkel 96 
                  + ++ +++ vl+ ++++++++++l ++
   KKY23966.1  76 AFYRGADCCVLVYDVNNSKSFDTLDSW 102
                  567888888999999999999988876 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.072
                  -EEEEEEE-GGG--HHH...HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHC CS
  RsgA_GTPase  47 iepvivlnKiDlleeee...eleelkeelealgyevllvsaktkegleelkell 97 
                   + v++ nK+Dl e+++   + +++    ++ g++ + +sak+  ++e+  e++
   KKY23966.1 118 FPFVVLGNKVDLEESKRmisSKRAMTFCQSKGGIPYFETSAKEAINVEQAFEVI 171
                  34566669****999997744444444556678999999999988888766665 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.071        55       1      17 [.      13      29 ..      13      42 .. 0.81
   2 !   11.9   0.0   0.00018      0.14      71     178 ..      42     143 ..      37     183 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.071
  ATP_bind_1  1 vvGpaGsGKttfvgals 17
                ++G  G+GKt+++++ +
  KKY23966.1 13 ILGDSGVGKTSLMNQYV 29
                6899********99865 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00018
  ATP_bind_1  71 aleflresldwldeelekeeddyllfDtPGQielfthseslakiveeLesefalvvvyLvDsqrltd...ptkfisgllsalsamlrlelPhvvvlnkf 166
                  ++fl++++  +d++l        l Dt GQ ++  +  +          ++a ++v + D++ +++     ++ ++ l+  s     + P+vv  nk+
  KKY23966.1  42 GADFLTKEV-LVDDRL----VTMQLWDTAGQERFQSLGVAFY--------RGADCCVLVYDVNNSKSfdtLDSWRDEFLIQASPRDPESFPFVVLGNKV 127
                 556666666.556666....57889********999988888........9************9999886778999999999*99************** PP

  ATP_bind_1 167 Dllkek....lekele 178
                 Dl ++k    +++++ 
  KKY23966.1 128 DLEESKrmisSKRAMT 143
                 **77665443333333 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   9.1e-06    0.0071       5      64 ..      10      72 ..       6     141 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9.1e-06
                EEEEE-STTSSHHHHHHHHHHSS---B---S..S-EEETTG....GGTT-SEEEETT-GCCSH CS
       SRPRB  5 avllvGlsdsGKTslftrLttdsvkktvtSq..essaalkv.ksekgskltliDfPGheklrq 64
                +v+++G s  GKTsl+++  ++++ +++ +   +  ++++v  +++  +++l D  G+e++++
  KKY23966.1 10 KVIILGDSGVGKTSLMNQYVNKKFSNSYKATigADFLTKEVlVDDRLVTMQLWDTAGQERFQS 72
                69********************99999987655555666666777888999999999999864 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00019      0.14       3      33 ..      10      42 ..       8      53 .. 0.77
   2 ?    2.3   0.0      0.16   1.3e+02      97     141 ..     125     171 ..     117     173 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00019
   PduV-EutP  3 killiGkvgsGKttLtqalkgeel..kYkktqa 33
                k++++G +g+GKt+L+++  ++++  +Yk t  
  KKY23966.1 10 KVIILGDSGVGKTSLMNQYVNKKFsnSYKATIG 42
                89*************998877766225777755 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.16
   PduV-EutP  97 tkidlaedeeniea..veelLksaGaekifevsavekegieellkyl 141
                  k+dl e++  i+   + ++ +s G    fe+sa e +++e+ ++++
  KKY23966.1 125 NKVDLEESKRMISSkrAMTFCQSKGGIPYFETSAKEAINVEQAFEVI 171
                 58999977777765114455678888899**********99988876 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.5e-05      0.02       3      69 ..      11      90 ..       9     111 .. 0.75
   2 ?   -1.1   0.0       1.6   1.3e+03     144     159 ..     121     136 ..     113     168 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.5e-05
                EEEEESTTCCHHHHHHHHH.CT--SS-EEEEESS-..SSCHCCCCCC.........HCCCT......EEEETTTTECCHCTT-H CS
        cobW  3 tvltGflGsGKTtLlnhll.enraglklavivNef..gevsiDaell.........retgve.....ivelenGciCctlredl 69
                +++ G  G GKT+L+n+++ ++ ++   a i  +f  +ev +D +l+         +    e      v +  G  Cc l  d+
  KKY23966.1 11 VIILGDSGVGKTSLMNQYVnKKFSNSYKATIGADFltKEVLVDDRLVtmqlwdtagQ----ErfqslGVAFYRGADCCVLVYDV 90
                6889999************55556666799999*93345889***995555543321....25555588889999999876665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.6
                 EEEEE-HHHHCHC..H CS
        cobW 144 llvlnKtDlldeeall 159
                 +++ nK+Dl ++++++
  KKY23966.1 121 VVLGNKVDLEESKRMI 136
                 4666888877666433 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.1e-05     0.016       2      49 ..      11      65 ..      10     138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.1e-05
                EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--........ CS
       AAA_5  2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreik......n 49
                v+++G++G+gK++l+ ++      +++    + +++t+e l+  r ++       
  KKY23966.1 11 VIILGDSGVGKTSLMNQYVNKKfSNSYKATIGADFLTKEVLVDDRLVTmqlwdtA 65
                89***********998876555599**************9999998875555443 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.5e-05     0.035       4      35 ..       8      39 ..       5      65 .. 0.79
   2 ?   -1.4   0.0       1.4   1.1e+03     188     221 ..     104     137 ..      88     142 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.5e-05
                EEEEEEEEBTTSSCCCCCCTTSSSS------- CS
      Septin  4 eftlmvvGesglGkttlintlfetdlieeekl 35
                 + +++ G+sg+Gkt+l+n  ++++  ++ k 
  KKY23966.1  8 LLKVIILGDSGVGKTSLMNQYVNKKFSNSYKA 39
                5789******************9998887544 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.4
                 SCCHHHHHHHHHHC-SEEB-SSSSEEEESSSEEE CS
      Septin 188 deeakelseklkeslPfaivgsneliekkgkkvr 221
                 de   ++s +  es+Pf ++g +  +e++ +++ 
  KKY23966.1 104 DEFLIQASPRDPESFPFVVLGNKVDLEESKRMIS 137
                 4555556666667889998888888887776665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   2.4e-05     0.019       9      38 ..      12      52 ..       9     107 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.4e-05
      AAA_22  9 vvtGesGtGKTtllrrlleqldeeakaee...........e 38
                ++ G sG+GKT l++++++++   ++ ++            
  KKY23966.1 12 IILGDSGVGKTSLMNQYVNKKFSNSYKATigadfltkevlV 52
                799***************98754444444565555555554 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1     4e-05     0.031      35      63 ..      10      38 ..       3      48 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4e-05
       AAA_7 35 pvllvGptGtGKtviikdllkkldkekyl 63
                +v++ G++G+GKt++++++++k  +++y+
  KKY23966.1 10 KVIILGDSGVGKTSLMNQYVNKKFSNSYK 38
                6899**************77766556665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.7e-05     0.037       4      22 ..      10      28 ..       8      64 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.7e-05
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                k++i G+sg+GKT+l++++
  KKY23966.1 10 KVIILGDSGVGKTSLMNQY 28
                89***************99 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   3.3e-05     0.026      27      45 ..      11      29 ..       2     185 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.3e-05
      AAA_16 27 vllsGesGvGKsslvrell 45
                v++ G+sGvGK+sl+++  
  KKY23966.1 11 VIILGDSGVGKTSLMNQYV 29
                89*************7654 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00014      0.11      23      49 ..      11      37 ..       3      50 .. 0.84
   2 ?   -2.4   0.0       4.8   3.7e+03      73     106 ..     140     168 ..     117     181 .. 0.45

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00014
    ATPase_2 23 yfiYGpegsGKtaLlkeiienledkdk 49
                + i G  g+GKt+L+++ ++++ + ++
  KKY23966.1 11 VIILGDSGVGKTSLMNQYVNKKFSNSY 37
                5799****************9955444 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.8
    ATPase_2  73 eekkklekalgiavpkaeleeilkeksklvfkai 106
                 +  ++ + + gi+  +++++e       +v++a+
  KKY23966.1 140 RAMTFCQSKGGIPYFETSAKEA-----INVEQAF 168
                 3333333333444444444332.....2333333 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00019      0.15       1      57 [.      10      69 ..      10      99 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00019
                EEEEE--TTSSHHHHHHHHHHHH...GGGE.EE..EEEEEE-------EEEEEET.T--E CS
    NTPase_1  1 kvfiTGppGvGKtTlvkkvlellkssgvkv.gG..fyteevreggrrigFkivdlasgee 57
                kv+i G +GvGKt l+++ +++  s+ +k   G  f+t+ev  ++r +  ++ d a +e+
  KKY23966.1 10 KVIILGDSGVGKTSLMNQYVNKKFSNSYKAtIGadFLTKEVLVDDRLVTMQLWDTAGQER 69
                58999***********99888766666654234459******999999999999954444 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0002      0.16      36      62 ..       9      35 ..       2      72 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
        TniB 36 pnlllvGdsnnGKtmivekFarlhppe 62
                 +++++Gds +GKt++++++ +++ ++
  KKY23966.1  9 LKVIILGDSGVGKTSLMNQYVNKKFSN 35
                5689****************9887544 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00023      0.18       3      20 ..      11      28 ..       9      39 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00023
                EEEEC-TTTCHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkl 20
                vi+ G++G+GKT L+ + 
  KKY23966.1 11 VIILGDSGVGKTSLMNQY 28
                89************9875 PP

>> Glyco_hydro_75  Fungal chitosanase of glycosyl hydrolase group 75
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00023      0.18      14      61 ..      83     134 ..      63     159 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00023
  Glyco_hydro_75  14 rCksspdtqpetsfkdlvksy......giedldaeehpYvVlgnegksfdpkea 61 
                      C    d++++ sf d+++s+      + +  d+e +p+vVlgn+   ++++++
      KKY23966.1  83 CCVLVYDVNNSKSF-DTLDSWrdefliQASPRDPESFPFVVLGNKV-DLEESKR 134
                     45677788888999.5899997766666888999*********964.3333333 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00034      0.26      23      46 ..      11      32 ..       2      67 .. 0.84
   2 ?   -2.9   0.0       3.8     3e+03     139     174 ..     140     177 ..     128     183 .. 0.47

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00034
                EEEEESTTSSHHHHHHHHCCSHCC CS
      NB-ARC 23 valvGmgGvGKttlakqilnksde 46
                v + G  GvGKt l++q +nk  +
  KKY23966.1 11 VIILGDSGVGKTSLMNQYVNK--K 32
                7899*************9888..3 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.8
                 SBCCCCCCS-S-..EEEEEESS--HHHHHHHHHHCCTS CS
      NB-ARC 139 Rdeevanavsat..sekievelLekdeawellenkvfe 174
                 R +  +++ ++    e+   e ++ ++a+e++   + +
  KKY23966.1 140 RAMTFCQSKGGIpyFETSAKEAINVEQAFEVIARNALQ 177
                 44444444444432233334445555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 1256.74
//
Query:       KKY23967.1  [L=614]
Description: hypothetical protein UCRPC4_g02780 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-24   86.3   0.4    6.3e-14   52.0   0.3    2.4  2  PLDc_2    PLD-like domain
    9.6e-05   22.1   0.0      0.037   13.6   0.0    2.3  2  FAM83     FAM83 A-H
  ------ inclusion threshold ------
       0.11   12.6   0.3       0.22   11.6   0.3    1.5  1  TcpS      Toxin-coregulated pilus protein S
       0.11   12.8   0.2        1.2    9.5   0.1    2.4  2  Ntox44    Bacterial toxin 44
       0.13   13.2   0.9       0.89   10.5   0.0    2.7  3  NIDO      Nidogen-like


Domain annotation for each model (and alignments):
>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.3   1.7e-17   6.3e-14       3     133 .]     247     375 ..     245     375 .. 0.82
   2 !   32.2   0.0   2.3e-11   8.2e-08      79     125 ..     500     554 ..     419     562 .. 0.75

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 1.7e-17
      PLDc_2   3 qliksAkksidiatyyfvsdreildallkaakrgvkvrilldskkd...dagavdeaslkelkellleagvevrvfetllgslHaKlylid...gktvi 95 
                 ++i+ A+ +++ia y + +d+ei+ +l +++    +++i++d++ +    ++++++a +  +k+  ++++v+ r   ++ +  H+K++++     k++i
  KKY23967.1 247 AAIADATAQVRIAAYDL-NDPEIVSRLEQLQ---GRLKIIIDDSGShkpASASETKAAAMLIKSA-AAENVQ-RQ--HMGNLQHNKMIVVYgdkTKIAI 337
                 68999************.*****98885554...478*****97667665566666777777777.888888.33..323677*******633555*** PP

      PLDc_2  96 vGSsNltkrgldlnlElnvviedkelakeleeeFerlw 133
                  GS+N++ rgl  + +++vv++++ +++ +++ F++lw
  KKY23967.1 338 GGSTNFSWRGLYVQNNNAVVLQGANAVQIFNDAFDSLW 375
                 *************************************9 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 2.3e-11
      PLDc_2  79 l....gslHaKlylid....gktvivGSsNltkrgldlnlElnvviedkelakel 125
                      ++lH+K+++id       v++GS+N+++++ ++  E+++vi+d+++a+ +
  KKY23967.1 500 TggsgTRLHHKFLVIDfnkpTARVYTGSYNFSTAADTKHAENLFVIKDQRVATSY 554
                 14455789********866555***************************999877 PP

>> FAM83  FAM83 A-H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0     1e-05     0.037     215     271 ..     316     377 ..     243     380 .. 0.84
   2 !    6.3   0.0    0.0017       6.1     218     259 ..     506     551 ..     499     558 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1e-05
       FAM83 215 vkGqlkekfllv...Dgek.vlsGsYsftWsssrlhrnlvtvltG.qvvesFdeeFreLYae 271
                   G+l+++ ++v   D +k ++ Gs  f+W    ++ n+++vl+G ++v+ F+  F  L+a+
  KKY23967.1 316 HMGNLQHNKMIVvygDKTKiAIGGSTNFSWRGLYVQNNNAVVLQGaNAVQIFNDAFDSLWAN 377
                 468887766665455444425779*********************558***********996 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0017
       FAM83 218 qlkekfllvDgek....vlsGsYsftWsssrlhrnlvtvltGqvve 259
                 +l++kfl++D +k    v +GsY f+  +   h +++ v++ q v 
  KKY23967.1 506 RLHHKFLVIDFNKptarVYTGSYNFSTAADTKHAENLFVIKDQRVA 551
                 589*******874333399*******99999999999888877765 PP

>> TcpS  Toxin-coregulated pilus protein S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   6.1e-05      0.22     104     152 .]     317     366 ..     297     366 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.1e-05
        TcpS 104 vgngeekkavlaykdktenvvnGdfykGWr.lkiddrkvslskGseviel 152
                 +gn ++ k+++ y dkt+  + G+    Wr l ++++++++ +G++++++
  KKY23967.1 317 MGNLQHNKMIVVYGDKTKIAIGGSTNFSWRgLYVQNNNAVVLQGANAVQI 366
                 5899*************************98999************9975 PP

>> Ntox44  Bacterial toxin 44
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.27   9.8e+02      26      51 ..     137     163 ..     126     169 .. 0.74
   2 ?    9.5   0.1   0.00034       1.2      32      89 ..     324     382 ..     289     389 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.27
      Ntox44  26 avk.rllkssvkdsiykyddlgNihYG 51 
                 +++  ++ ++++ s +++dd g i+YG
  KKY23967.1 137 SNAgTPGIFTYRVSSVFMDDKGAISYG 163
                 4444566677778899**********9 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00034
      Ntox44  32 k.ssvkdsiykyddlgNihYGyvGraagfseetLlkgaglaqiltnakkstgddpeDkk 89 
                 k ++v++  +k  + g  ++   G ++  ++ ++l+ga++ qi+++a+ s + +p+D +
  KKY23967.1 324 KmIVVYGDKTKIAIGGSTNFSWRGLYVQNNNAVVLQGANAVQIFNDAFDSLWANPNDPD 382
                 135556668888888999999999999999********************999999975 PP

>> NIDO  Nidogen-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00025      0.89      11      84 ..      77     150 ..      72     151 .. 0.76
   2 ?   -2.9   0.0       3.9   1.4e+04      24      46 ..     215     239 ..     213     257 .. 0.66
   3 ?   -0.8   0.1      0.85     3e+03      51      73 ..     435     457 ..     383     463 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00025
        NIDO  11 dgsesfalfnYedggiqwttgk...egetpaqaGfsagdgstkkkyynlpgsgtssilnltessnvgvpGrwafrvd 84 
                 +++  f+l  Y+ +g+ + + +   +++ +  +Gf        +  ++ + s  ++++ ++ ssn+g pG++ +rv 
  KKY23967.1  77 SEKALFTLTCYRGEGMCLLAMNwkqNTSPNNFVGFAIEYM---EPGTTHRLSPFQKLRWVHFSSNAGTPGIFTYRVS 150
                 5677899999**99999987655234447779***88774...333333457789999999**************96 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.9
        NIDO  24 ggiqwttgk..egetpaqaGfsagd 46 
                  gi++ +++  e+ + a +Gf+a +
  KKY23967.1 215 AGITFKSTDskEEIALAWMGFEARN 239
                 5777776543233377888988765 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.85
        NIDO  51 kkyynlpgsgtssilnltessnv 73 
                    y+++gs +++i+++t + nv
  KKY23967.1 435 AFLYETKGSIRDAITKVTDENNV 457
                 33455566666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.51
# Mc/sec: 3641.47
//
Query:       KKY23968.1  [L=348]
Description: putative glycine cleavage system t protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-57  193.0   0.0    7.7e-57  192.6   0.0    1.1  1  GCV_T     Aminomethyltransferase folate-binding domain
    9.4e-19   67.1   0.0    1.6e-18   66.4   0.0    1.4  1  GCV_T_C   Glycine cleavage T-protein C-terminal barrel domain


Domain annotation for each model (and alignments):
>> GCV_T  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.6   0.0   8.6e-61   7.7e-57      53     257 .]      12     230 ..       8     230 .. 0.93

  Alignments for each domain:
  == domain 1  score: 192.6 bits;  conditional E-value: 8.6e-61
       GCV_T  53 vsGpdaaalLqrlltndisklkpgkatytlllne.dGgvidDlivarldedefllvvnaankekdlawlekaaek....kdldvevedvteelallalq 146
                 + Gp+a+a+L ++++ ++++l+  ++t+++ll++ +Gg++dD++++rl+ d+f++v+na++++ d ++l+++ +k    +d  + +e +++ ++l+alq
  KKY23968.1  12 LHGPGAEAFLMQITPTSVNELSNYTSTLSVLLDPeTGGIVDDTVITRLGSDSFYFVTNAGCRDGDAKFLKAELKKfserDDRGLNWETLDD-YGLIALQ 109
                 68******************************9769********************************99988878888999999999655.******* PP

       GCV_T 147 GPkarevlskllgadlselkffsfaevela.....ggkkvlvsRtgytGedGfeiyipa.......eeaeelweaLleagkeegvkpaGlgArdtlRlE 233
                 GPka+evl+++++ dl +l+f +++++ l+     ++ ++lvsRtgytGedGfei+ip        +  +++++aLl+      v+ aGl+Ard+lRlE
  KKY23968.1 110 GPKAAEVLQRFTDSDLGTLTFGQCRSISLTlpngtQTPELLVSRTGYTGEDGFEISIPVdntpetaDLPTKVTKALLQDT--DTVRLAGLAARDSLRLE 206
                 **************************9999999977777*******************9888877777889999997655..59*************** PP

       GCV_T 234 aglrlyghdldeettPleaglgwa 257
                 ag++lyghd++  ttP ea+l w+
  KKY23968.1 207 AGMCLYGHDISLLTTPPEASLTWV 230
                 ***********************7 PP

>> GCV_T_C  Glycine cleavage T-protein C-terminal barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   1.8e-22   1.6e-18       1      79 [.     261     341 ..     261     342 .. 0.92

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 1.8e-22
     GCV_T_C   1 Rrlvglelddgapllrggepilr..dgevvGhvTSgaysptl.gksialAyvkaelaklgtevevevrgkrvpaevvkkpfy 79 
                 Rr +gl +++g p +r+g++i++   ++ vG vTSg +sptl gk+ia+A+v+++++k gt+++v++r++  +aevvk pf+
  KKY23968.1 261 RRRIGLDIEKG-PPAREGAEIIDseTEKAVGVVTSGLPSPTLgGKNIAMALVDNGYHKKGTKLKVKIRKNVKDAEVVKLPFV 341
                 89******988.777*******6336688*************77*************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.53
# Mc/sec: 1984.03
//
Query:       KKY24090.1  [L=671]
Description: putative heat shock protein ssc1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.7e-269  892.8  14.5   9.9e-269  892.6  14.5    1.0  1  HSP70     Hsp70 protein
    3.3e-14   52.5   4.9    2.9e-12   46.1   1.3    2.5  2  MreB_Mbl  MreB/Mbl protein
    0.00031   20.6   0.0    0.00077   19.2   0.0    1.7  1  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom
  ------ inclusion threshold ------
      0.049   13.4   1.3       0.11   12.3   1.3    1.5  1  MukF_M    MukF middle domain
       0.19   12.2   5.5       0.44   11.0   5.5    1.6  1  TBCC_N    Tubulin-specific chaperone C N-terminal domain
       0.76    9.6   5.6        1.6    8.5   5.6    1.5  1  Tom22     Mitochondrial import receptor subunit Tom22
       0.89   10.0  10.9          2    8.9   0.3    4.2  3  FtsA      Cell division protein FtsA
        1.1    9.5   6.3        2.3    8.4   6.3    1.5  1  DUF4363   Domain of unknown function (DUF4363)
        2.5    7.1   5.9        5.2    6.0   5.9    1.4  1  Atg14     Vacuolar sorting 38 and autophagy-related subunit 1
        2.9    6.7  10.2          6    5.7  10.2    1.4  1  Spc7      Spc7 kinetochore protein
        5.8    7.3  11.1        1.6    9.1   6.8    2.1  2  DUF1690   Protein of Unknown function (DUF1690)
        7.1    5.0   7.7         11    4.4   7.7    1.1  1  RRN3      RNA polymerase I specific transcription initiation 


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  892.6  14.5  6.6e-272  9.9e-269       1     597 [.      46     646 ..      46     648 .. 0.98

  Alignments for each domain:
  == domain 1  score: 892.6 bits;  conditional E-value: 6.6e-272
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTT.SEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEE CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkk.erlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkav 98 
                 viGiDLGttns+vavmeg+++++i+n+eg+rttPsvvaFt++ erlvG aAkrqav+np+nt+f++KrliGrkfsdpe q++ike+pyk+v+++ng+a+
  KKY24090.1  46 VIGIDLGTTNSAVAVMEGKTPRIIENAEGARTTPSVVAFTQDgERLVGIAAKRQAVVNPENTLFATKRLIGRKFSDPECQRDIKEVPYKIVQHTNGDAW 144
                 79************************************************************************************************* PP

                 EEEEETTEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXSSX CS
       HSP70  99 veveaagekftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGggt 197
                 ve++  g+k++p+qi+++vL+k+ketae+yl+k++++ v+tvPaYfnd qRqatkdAg+iAGLnvlR+vNepTAaalaYGl+k+d +r+++vyDlGggt
  KKY24090.1 145 VEAR--GQKYSPSQIGGFVLQKMKETAENYLSKPIKNGVVTVPAYFNDMQRQATKDAGQIAGLNVLRVVNEPTAAALAYGLEKED-DRIIAVYDLGGGT 240
                 ***9..*******************************************************************************.************* PP

                 EEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTT.EEEEEEEEH CS
       HSP70 198 fdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedg.kdlseklsR 295
                 fd+Sile++kGvfevk+T+gDthlGGedfD +lv+hlv++fkk++gidls+d++a+qr++eaaekaK+eLSss qt+inl+++t+d++g k++++k++R
  KKY24090.1 241 FDISILEIQKGVFEVKSTNGDTHLGGEDFDITLVRHLVQQFKKESGIDLSNDRMAIQRIREAAEKAKIELSSSLQTDINLPFITADSSGpKHINSKMTR 339
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCCEEEEBESS-E CS
       HSP70 296 akfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqagvlsgeeevkdllllDvtpLsl 394
                 a++e lv++l++rt++pv+kalkda+lk++ei ev+lvGG+tR+Pkv+e+vk++fg++p k+vnpDeavaiGAA+q++vl+g  ev d+lllDvtpLsl
  KKY24090.1 340 AQLEGLVDPLINRTIDPVRKALKDANLKANEITEVILVGGMTRMPKVTESVKSIFGRDPAKSVNPDEAVAIGAAIQGAVLAG--EVMDVLLLDVTPLSL 436
                 **********************************************************************************..*************** PP

                 EEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETTTCCEEE CS
       HSP70 395 gietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdketgkeee 493
                 gietlggv+t+li+rnttiptkksq+fstaad qtavei+v+qgerelv+dnkllg+f+l gippa rGvpqieVtfdida+ i++v+akdk+t+k+++
  KKY24090.1 437 GIETLGGVFTRLINRNTTIPTKKSQIFSTAADFQTAVEIKVYQGERELVRDNKLLGNFQLVGIPPAHRGVPQIEVTFDIDADSIVHVHAKDKSTNKDQS 535
                 *************************************************************************************************** PP

                 EEEECCSSSBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHCHTTSSC.......HHHHHHHHHH CS
       HSP70 494 itieaseglseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleeeaekvseaekekvesaieeLkeeleeee.......keeieaktee 585
                 iti++ +gls++ei++mv+dae++ e+dk++k+aiea n+a+++++++ek+l+e ++k+++ae+++++++i+ L+e +++++       +ee+++k++e
  KKY24090.1 536 ITIASGSGLSDSEIQNMVEDAERYGEQDKERKAAIEAANRADSVLNDTEKALKEFEDKLDKAEADSIKEKITTLREIVAKNQsgegtatAEELKTKIDE 634
                 ****************************************************************************99888866677777777788888 PP

                 HHHHHHHHHHHH CS
       HSP70 586 lkkvvekiaekl 597
                 l++++ ++++k+
  KKY24090.1 635 LQTSALTLFDKM 646
                 877777776665 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1    0.0014       2.1       3      43 ..      46      95 ..      44     111 .. 0.65
   2 !   46.1   1.3   1.9e-15   2.9e-12      85     317 ..     169     414 ..     157     420 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0014
                EEEEEE-SSEEEEEE.TTTE..EEEE......EES-EEEETTT--EEEES CS
    MreB_Mbl  3 dlgiDLGtantlvyv.kgkg..ivln......epsvvAikkktkkvlavG 43
                 +giDLGt+n  v v +gk   i+ n       psvvA++++ ++++ + 
  KKY24090.1 46 VIGIDLGTTNSAVAVmEGKTprIIENaegartTPSVVAFTQDGERLVGIA 95
                69********9995525554325544222222589999888877775544 PP

  == domain 2  score: 46.1 bits;  conditional E-value: 1.9e-15
                 HHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETT.EEEEEEE....ES-SHH CS
    MreB_Mbl  85 vkkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgnmvvdiGggttevavislg.givtsks....vrvaGd 178
                 +++  s + ++ v++vP   ++++r+A k+a + aG +   +++ep aAA+  gl+ e+ +   v d+Gggt +++++ ++ g+ + ks     +++G+
  KKY24090.1 169 AENYLSKPIKNGVVTVPAYFNDMQRQATKDAGQIAGLNVLRVVNEPTAAALAYGLEKEDDRIIAVYDLGGGTFDISILEIQkGVFEVKStngdTHLGGE 267
                 3333444556779*****************************************************************986266666662233579*** PP

                 HHHHHHHHHHHHHHSEE--HHHHHH..HHHHH-BSS--HHHH.....EEEEEEEETTTTCEEEEEEEHH....HHHHHHHHHHHHHHHHHHHHHHTS-H CS
    MreB_Mbl 179 eldeaiikyirkkynlliGertaek..ikieigsavkeeeee.....kmeikGrdlvtglpkevevsse....evrealkepvsaiveavkevLektpp 266
                 ++d ++++++ ++++   G   +++    ++i +a+++++ e     +++i+   ++       +++s+    +++  +   +++ ++ v+++L++  +
  KKY24090.1 268 DFDITLVRHLVQQFKKESGIDLSNDrmAIQRIREAAEKAKIElssslQTDINLPFITADSSGPKHINSKmtraQLEGLVDPLINRTIDPVRKALKD--A 364
                 *********999999877765443200222233333322222222244555544444444444445555000055555566677788888888886..5 PP

                 HHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHH CS
    MreB_Mbl 267 eLaadivdrgivltGGgallkgldkllseetglpvkvaedpltcvakGtgk 317
                 +L a+ + + ++l+GG + +  + + +++ +g     + +p ++va G+++
  KKY24090.1 365 NLKANEITE-VILVGGMTRMPKVTESVKSIFGRDPAKSVNPDEAVAIGAAI 414
                 788877766.6677*********************************9875 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   5.1e-07   0.00077     122     196 ..     336     418 ..     320     420 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5.1e-07
      FGGY_C 122 hiarAaleavalqlrailealekd.......sgkpldrlavdGGgskndllmqllAdilg.vpVerpktaeatalGaAilAav 196
                  ++rA+le++   l +++    ++       +  ++++++++GG+++ + + +   +i+g  p + + ++ea+a+GaAi +av
  KKY24090.1 336 KMTRAQLEGLVDPLINRTIDPVRKalkdanlKANEITEVILVGGMTRMPKVTESVKSIFGrDPAKSVNPDEAVAIGAAIQGAV 418
                 66777777777666665544422234444556777*************************99999999************998 PP

>> MukF_M  MukF middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.3   7.1e-05      0.11      79     142 ..     571     634 ..     545     641 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.1e-05
                 GGHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHH CS
      MukF_M  79 eaisscekllsetsstlrelqdtleaa.Gdklqaellriqeavlgreelelvdklildlqskldr 142
                 ea +  +++l++t ++l+e+ d l++a  d ++ ++ +++e+v ++++ e   +   +l++k+d 
  KKY24090.1 571 EAANRADSVLNDTEKALKEFEDKLDKAeADSIKEKITTLREIVAKNQSGEGT-ATAEELKTKIDE 634
                 344556789***************9884699***********9999887765.456778888876 PP

>> TBCC_N  Tubulin-specific chaperone C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   5.5   0.00029      0.44       4      78 ..     560     638 ..     557     643 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00029
      TBCC_N   4 ekReqerqeqlekrkeereseaveeekvdsFlkaFte.ekaaieellesve...esadksklkqkldeitaeiqeLqkl 78 
                  ++++er++++e+++++++  +++e+  ++F++++++ e+++i+e++++++   +++++ + ++  +e++ +i+eLq +
  KKY24090.1 560 GEQDKERKAAIEAANRADSVLNDTEKALKEFEDKLDKaEADSIKEKITTLReivAKNQSGEGTATAEELKTKIDELQTS 638
                 5899*******************************8625679*********999999999999*************975 PP

>> Tom22  Mitochondrial import receptor subunit Tom22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   5.6    0.0011       1.6       7      73 ..     553     620 ..     548     640 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0011
       Tom22   7 vedeefqeeqegeeeelaeededead..etdsdseissdedddfdvedEtlldRivALkDiippttRks 73 
                 ved e   eq++e+++++e++++ ad   +d+++ +++ ed+  ++e  ++ + i+ L++i+  ++  +
  KKY24090.1 553 VEDAERYGEQDKERKAAIEAANR-ADsvLNDTEKALKEFEDKLDKAEADSIKEKITTLREIVAKNQSGE 620
                 67776666666666444443333.3423566666666555555556799*************9887665 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.017        26       1      22 [.      47      68 ..      47     191 .. 0.70
   2 ?    8.9   0.3    0.0014         2       3     102 ..     234     410 ..     232     413 .. 0.66
   3 ?   -1.2   1.5       1.9   2.8e+03      47      47 ..     572     572 ..     462     654 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.017
                EEEEE-SSSEEEEEEETTEEEE CS
                xxxxxxxxxxxxxxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedgalvh 22
                +++D+G++ + vav+e++ ++ 
  KKY24090.1 47 IGIDLGTTNSAVAVMEGKTPRI 68
                589*************975543 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0014
                 EEE-SSSEEEEEEETTEEEE.................EEEES-........-HHHHHHHHHHHHT--HHHHHHHHHHH--S--................ CS
                 xxxxxxxxxxxxxxxxxxxx.................xxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF
        FtsA   3 vDiGagktdvavaedgalvh.................lrvigv........ggngitkdiakalrtaveeAerikikyGsala................ 60 
                  D+G+g+ d++++e ++ v+                 ++ +           g  +++d   a++   e+Ae+ ki+  s l+                
  KKY24090.1 234 YDLGGGTFDISILEIQKGVFevkstngdthlggedfdITLVRHlvqqfkkeSGIDLSND-RMAIQRIREAAEKAKIELSSSLQtdinlpfitadssgpk 331
                 58888888888888865433444454444455555442222222223333333334444.346788889999999988888888888889988888855 PP

                 ..EEEEEHHHHH.......................................GGGGSTTHHHHHHHHH..T-..HHHT-GGGHHHH CS
                 ..xxxxxxxxxx.......................................xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
        FtsA  61 ..ekeigrkels.......................................ggsalpnleelaeral..spkleevsdpeyasal 102
                   + +++                                            g + +p+++e +++++   p   +  +p  a+a+
  KKY24090.1 332 hiNSKMT----RaqleglvdplinrtidpvrkalkdanlkaneitevilvgGMTRMPKVTESVKSIFgrDP--AKSVNPDEAVAI 410
                 5533333....24455888888888888999999999999999999********************96533..224455555555 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.9
                 H CS
                 x RF
        FtsA  47 e 47 
                 +
  KKY24090.1 572 A 572
                 0 PP

>> DUF4363  Domain of unknown function (DUF4363)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   6.3    0.0015       2.3      12      98 ..     547     637 ..     545     642 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0015
     DUF4363  12 delsekleeleeai....enedweeakekleelekeWekkkkklsifiehdeldeietslaklkayietedkeealaelaelkfllehike 98 
                 +e+++++e++e++     e +   ea++ ++++ ++ ek  k ++  ++  e d+i+++++ l++ ++++   e  a+ +elk+ ++++++
  KKY24090.1 547 SEIQNMVEDAERYGeqdkERKAAIEAANRADSVLNDTEKALKEFEDKLDKAEADSIKEKITTLREIVAKNQSGEGTATAEELKTKIDELQT 637
                 5788888888888842222333334555556666666666666666699*************************************99986 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   5.9    0.0035       5.2      42     151 ..     546     658 ..     531     669 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0035
       Atg14  42 kkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk.....kRrsdleslqneleerrkkqiak 135
                  ++i+ ++e  e+ ++++++ k   +++++  s   d+++ l+e +dkl++  +e +  k+k+ +l++ ++     + ++++e l++++ e +++ ++ 
  KKY24090.1 546 DSEIQNMVEDAERYGEQDKERKAAIEAANRADSVLNDTEKALKEFEDKLDK--AEADSIKEKITTLREIVAknqsgEGTATAEELKTKIDELQTSALTL 642
                 578888999999888899999999999999999999999999999999985..455556666666666666555778899999**************99 PP

       Atg14 136 lqdaikrieqklssls 151
                 + ++ k  e+ +++  
  KKY24090.1 643 FDKMHKAREESQQAPP 658
                 9999986666666554 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  10.2     0.004         6     145     253 ..     546     649 ..     542     658 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.004
        Spc7 145 eenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqk 243
                 +++++++ ed+e+  +q +e +++ ++ ++  + l+++ + l+e++++   +dk+e  +++e++++l + ++  k++  e ++  eel++ki+el+++ 
  KKY24090.1 546 DSEIQNMVEDAERYGEQDKERKAAIEAANRADSVLNDTEKALKEFEDK---LDKAEADSIKEKITTLREIVA--KNQSGEGTATAEELKTKIDELQTSA 639
                 568999**************************************9988...555555555555555555555..4555555555555555555555544 PP

        Spc7 244 seleeeiaea 253
                  +l +++ +a
  KKY24090.1 640 LTLFDKMHKA 649
                 4443333333 PP

>> DUF1690  Protein of Unknown function (DUF1690)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       1.5   2.3e+03      35      84 ..     295     341 ..     268     372 .. 0.47
   2 ?    9.1   6.8    0.0011       1.6      11     103 ..     550     651 ..     543     660 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.5
     DUF1690  35 iqerVaeeLkkLraeeeetlkkfeeklekellkdeadakdelsskalnek 84 
                   +r+ e  +k    + e  ++++++++   ++ +++  ++++sk  + +
  KKY24090.1 295 AIQRIREAAEKA---KIELSSSLQTDINLPFITADSSGPKHINSKMTRAQ 341
                 334444333333...33333333333333333333333333444444444 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0011
     DUF1690  11 qslvsqLessketdasraqalekliqerVaeeLkkLraeeeetlkkfeeklekellkde..............adakdelsskalnekieeLrkk.lee 94 
                 q++v++ e+  e+d +r+ a+e+   +r ++ L+      e++lk+fe+kl+k+++++               ++ + + + ++l+ ki+eL++  l+ 
  KKY24090.1 550 QNMVEDAERYGEQDKERKAAIEAA--NRADSVLNDT----EKALKEFEDKLDKAEADSIkekittlreivaknQSGEGTATAEELKTKIDELQTSaLTL 642
                 678899999999999999999985..7888888887....899**********9999888899999888877666667777778888888887542555 PP

     DUF1690  95 fkkkeeekl 103
                 f+k++++++
  KKY24090.1 643 FDKMHKARE 651
                 555555433 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   7.7    0.0073        11     210     304 ..     546     654 ..     533     662 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0073
        RRN3 210 DVeiqveledlddeedeeleeelee............deddedddedd...........eesdlddlssdeeaeedee.kdeeeeslkkikelvekLDa 284
                 D eiq+ +ed +   ++++e+++ +            d                     ++ ++d+++++     +   k+++ e + + +el +k+D+
  KKY24090.1 546 DSEIQNMVEDAERYGEQDKERKA-AieaanradsvlnD---------TekalkefedklDKAEADSIKEKITTLREIVaKNQSGEGTATAEELKTKIDE 634
                 89********9987655554443.23567666555441.........12333333333433444444444333333332333337789999******** PP

        RRN3 285 iltllfehlekkfssestke 304
                 + t  ++ ++k  +++++++
  KKY24090.1 635 LQTSALTLFDKMHKAREESQ 654
                 ****9999999444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1614  (0.0900218); expected 358.6 (0.02)
Passed bias filter:                      827  (0.0461264); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.87u 0.35s 00:00:01.22 Elapsed: 00:00:00.53
# Mc/sec: 3806.84
//
Query:       KKY24091.1  [L=313]
Description: putative short-chain dehydrogenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-31  108.0   0.0    1.2e-30  106.4   0.0    1.7  1  adh_short       short chain dehydrogenase
    2.4e-20   73.1   0.0    2.4e-19   69.8   0.0    1.9  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    4.8e-10   39.3   1.4    1.2e-09   38.0   1.4    1.6  1  DUF1776         Fungal family of unknown function (DUF1776)
     0.0022   17.9   0.0     0.0032   17.4   0.0    1.2  1  NAD_binding_10  NAD(P)H-binding
  ------ inclusion threshold ------
       0.08   12.4   0.0       0.12   11.9   0.0    1.5  1  Epimerase       NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.0   3.4e-34   1.2e-30       2     191 ..      12     214 ..      11     218 .. 0.93

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 3.4e-34
                 EEEEESTTS.HHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH.SSESEEEE---SS--SSGGGCSH CS
   adh_short   2 vvlvtGass.GIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl.gkldvLvnNAGitgsgpfselse 98 
                 +v++tG+s+ G+G  +a e+ k+G +v++ +r+ +k+  ++ke +     + ++++Dv d +++++ v+++ + +  kld+L+nNAG   + ++ ++s 
  KKY24091.1  12 TVFITGCSDgGLGSGLALEFHKRGLRVLASARNLDKM-STLKEAG-----IETVPLDVLDPTSISDCVNTVSSLTsSKLDILINNAGGGYNMSITDISL 104
                 79****98637************************99.4444444.....99*******************999999********************** PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHH.................HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEES CS
   adh_short  99 eewervievNltgvflltravlpaml.................kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPG 180
                    ++++++N+ +++++++a+lp +l                 ++s   Ivn +S+ + +  +  ++Y AsKaa+a++t+ l+ el+p +i v+ + +G
  KKY24091.1 105 PSAKQLFDLNVWSYISVIQAFLPLLLhsrsshsssrcptttdsNSSTPMIVNNTSISSVNLTPFNSVYHASKAALASFTSHLRLELSPFNIYVVDLKTG 203
                 ************************999********99999988888899************************************************** PP

                 SBSSHHHHHHC CS
   adh_short 181 lvdTdmakelr 191
                  v++++  +++
  KKY24091.1 204 SVRSNFHSNRS 214
                 ***99887765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   6.7e-23   2.4e-19       4     183 ..      21     214 ..      17     242 .. 0.87

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 6.7e-23
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHH.SSEEEEEE-----EGCSS-GGGH-HHHHHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekf.gklDilvnnagiapklkgpfletsreefdral 99 
                    g+G ++A +++++G +v+++ +n ++   + +l+e  g e +++DV d++++ ++v++v + +  klDil+nnag   +   +++++s  + ++ +
    KKY24091.1  21 GGLGSGLALEFHKRGLRVLASARNLDK---MSTLKE-AGIETVPLDVLDPTSISDCVNTVSSLTsSKLDILINNAGGGYN--MSITDISLPSAKQLF 111
                   699*********************999...555554.68899********************9999**************..*************** PP

                   HHHTHHHHHHHHHHHH.HCTSC...............CE...EEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCT CS
  adh_short_C2 100 dvnlyslfllakaalp.lmkeg...............gs...ivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTl 177
                   d n+ s++++++a+lp l++++               +s   ivn +s+++   +p +++y+a+Kaal ++t  l  el p +i v     g ++ +
    KKY24091.1 112 DLNVWSYISVIQAFLPlLLHSRsshsssrcptttdsnSStpmIVNNTSISSVNLTPFNSVYHASKAALASFTSHLRLELSPFNIYVVDLKTGSVRSN 208
                   ****************64444457777777777776622666******************************************9999888888877 PP

                   GGGGST CS
  adh_short_C2 178 aasgik 183
                     s+ +
    KKY24091.1 209 FHSNRS 214
                   766665 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   1.4   3.4e-13   1.2e-09       5     201 ..      12     206 ..       8     227 .. 0.79

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 3.4e-13
     DUF1776   5 vvlvlGsptePltRsialDLerrGFiVfvtvesaeeeklvesedredIrplsvdddpssieasleefaqslesphvalpgakphvlrLkgvilvPslsy 103
                 +v + G     l + +al++++rG  V   +++ ++  ++++   e   pl v  dp+si++ +++  +  +s             +L  +i      y
  KKY24091.1  12 TVFITGCSDGGLGSGLALEFHKRGLRVLASARNLDKMSTLKEAGIE-TVPLDVL-DPTSISDCVNTVSSLTSS-------------KLDILINNAGGGY 95 
                 5666666666666777888888887777777777766665555333.2333333.477777777777776666.............4777777777889 PP

     DUF1776 104 ptgpietiplsswaselnerllspiltlqallplltsra..............kqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrph 188
                  ++ i+ i+l s ++++  ++ s+i+++qa+lpll                  + ++ +iv n+siss    pf ++ +    al +++  L+ el+p 
  KKY24091.1  96 NMS-ITDISLPSAKQLFDLNVWSYISVIQAFLPLLLHSRsshsssrcptttdsNSSTPMIVNNTSISSVNLTPFNSVYHASKAALASFTSHLRLELSPF 193
                 999.*****************************98654459***********8888999999****999999*************************** PP

     DUF1776 189 nidvtqikLGnld 201
                 ni+v+ +k G++ 
  KKY24091.1 194 NIYVVDLKTGSVR 206
                 *********9875 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   8.8e-07    0.0032       4      62 ..      21      77 ..      19     112 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 8.8e-07
                    SHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-S CS
  NAD_binding_10  4 GkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgad 62
                    G+ G+ l+ e  +r g++v a +Rn +k++ l+ e+g+e+v +dv+d+ ++ + ++ ++
      KKY24091.1 21 GGLGSGLALEFHKR-GLRVLASARNLDKMSTLK-EAGIETVPLDVLDPTSISDCVNTVS 77
                    8899999999999*.5**************997.7****************99988554 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.3e-05      0.12       2     158 ..      14     188 ..      13     285 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.3e-05
                 EEETTT.SHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HH......HHHHHHHHHT-SEEEE--S---HHHHHHS.....HHHHH CS
   Epimerase   2 lVtGat.GfiGsalvkallekgyevigldrlssasntarledlelveldltdrs......alerlfkeeqpdavihlAavggvaassed.....padfi 88 
                 ++tG + G +Gs l+ ++ ++g +v++ +r+ ++  t +++ +e v ld++d++      ++   + + + d+ i+ A+ gg++ s++d     +++++
  KKY24091.1  14 FITGCSdGGLGSGLALEFHKRGLRVLASARNLDKMSTLKEAGIETVPLDVLDPTsisdcvNTVSSLTSSKLDILINNAG-GGYNMSITDislpsAKQLF 111
                 677754499**********************************999999999995555443344455568999999976.4444444441111155566 PP

                 HHHTHHHHHHHHHHHHHTCT.EEEEEEEGGGGTSCSS..SS...BSTCSTTS--.--SSHHHHHHHHHHHHHHHHHH CS
   Epimerase  89 eknlqgtlnlleaarkagvk.rllflsSsevYGkdae..qp...keettltgpl.kpnspYaaaKlageklveayaa 158
                 + n+     +++a     ++ r  + sS +    d +  +p   ++ ++ + +l + ns Y a+K+a  + +  ++ 
  KKY24091.1 112 DLNVWSYISVIQAFLPLLLHsRSSHSSSRCPTTTDSNssTPmivNNTSISSVNLtPFNSVYHASKAALASFTSHLRL 188
                 66666666666666655333488888887777666665447855344443444477799999999998887776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 1966.60
//
Query:       KKY24092.1  [L=488]
Description: putative glucose galactose transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-13   49.4  36.4      3e-13   49.4  36.4    1.9  2  MFS_1     Major Facilitator Superfamily
    9.4e-06   24.7   8.1    9.4e-06   24.7   8.1    2.8  3  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
       0.12   12.0   0.0       0.12   12.0   0.0    4.6  5  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4  36.4     5e-17     3e-13       4     350 ..      61     407 ..      57     409 .. 0.77
   2 ?    1.5  18.9     0.019   1.1e+02      34     167 ..     312     438 ..     289     452 .. 0.71

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 5e-17
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslpl.GrlsdrfGrrrvlllglllfalglllllfa...sslw.lllvlrvlqGl 97 
                 ++fl ++a+++l ++ +   + dl+i+++ +g l + y+ +++v+ l + G+++ rfG r++++ gl l+++g+l+++ +     ++  ++ + ++ G 
  KKY24092.1  61 LFFLWGFAYGLLDVLNS-KFQADLNITAAKAGGLQASYFGAYFVGPLTYsGWIVRRFGYRWTFISGLCLYGIGALMFW-PsavYRSFgGFCGSLFIVGS 157
                 67888899999999999.99*****************************9999999*****************55555.2236667779********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee. 188
                 g ++l ++++ +ia   p++     + l ++  ++G++++pll++ +   + +       +++++ +a++ + ++v+ +++ p ++++ +  + + e  
  KKY24092.1 158 GLSTLETSANPYIAVCGPPRLSEIRLELSQSIQAVGSVVAPLLAARVFfKNTNegdltnVQWTYLGIAAFVFCLAVV-FFFAPIPEVTDADMALQAEQc 255
                 ********************************************95554787799****999999999999999883.355555555555555555535 PP

       MFS_1 189 ...kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallll 284
                     g  ++pl++++k+++       + + ++++++ +  +++++   ++e  + s +  a+  +al++ ++ai+++ a+ l   +++  r++l+ + +
  KKY24092.1 256 sdlTGFDEKPLSKHYKLFFG------VAAQFCYVGAQVGVASQFINY-TVESAKVS-HSVASDRYALAQGLFAIGRFAAAGLFVFVKP--RWVLMAFMT 344
                 44444444444443333333......556666666444446666666.8*******.6777777***********9999988866554..555555555 PP

       MFS_1 285 llaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslgga 350
                 ++++++ a ++v  +  +++l+lvl  f+ +++fp++++l  + ++ +++ + s+++  a s g++
  KKY24092.1 345 AIMVFIAAAMGVWGEGGVAMLSLVL--FFESCIFPTIFTLSIRGLG-RHTKRGSSWIVAAVSGGAL 407
                 5555555555555455555555555..89****************8.8999999999888775544 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.019
       MFS_1  34 igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfs 131
                 + l+ +l    +a++ + ++ l   + +r+vl++ +++  ++ +++++   +    +++  l  ++++++fp++ +l  +   + +  r+ +++ a++s
  KKY24092.1 312 YALAQGL----FAIGRFAAAGLFVFVKPRWVLMAFMTAIMVF-IAAAM-GVWGeGGVAMLSLVLFFESCIFPTIFTLSIRGLGR-HTKRGSSWIVAAVS 403
                 3333333....3555555555555567999777777777777.34443.3344459999999999***************9998.77777766666666 PP

       MFS_1 132 lGailgpllggllasslgWravfyilaivsllafvl 167
                  G +l p l gl+a++  +++++ i  + +++af +
  KKY24092.1 404 GG-ALFPSLTGLVADHKDYHVAMGIPLAGFFVAFAF 438
                 55.5779*************9999999999999774 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   8.1   1.6e-09   9.4e-06      53     193 ..      95     242 ..      47     244 .. 0.85
   2 ?   -2.4   5.4      0.26   1.6e+03      11      93 ..     279     355 ..     273     367 .. 0.51
   3 !    2.8   9.9    0.0072        43     324     442 ..     340     449 ..     315     453 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.6e-09
                 HTHHHHHHHHHH.HHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHH CS
    Sugar_tr  53 siflvGaiiGsl.fagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfG 150
                 ++++   ++G l ++g+++ rfG++++++ +  l+ iga++   +  ++s+  ++ + ++vG g+ +  + +  yi+   p++l  +   l q+  ++G
  KKY24092.1  95 ASYFGAYFVGPLtYSGWIVRRFGYRWTFISGLCLYGIGALMFWPSAVYRSFGGFCGSLFIVGSGLSTLETSANPYIAVCGPPRLSEIRLELSQSIQAVG 193
                 4444445555542689*************************9999999*************************************************** PP

                 HHHHHHHHHHH..HTSS-....TTHHHHHHHCCHHHHHHHHHHGGGS-- CS
    Sugar_tr 151 ilvaaifglgl..nktsn....adgwrillglqlvpallllilllflPE 193
                  +va  + + +  ++t++    +++w +l   ++v+ l++++++  +PE
  KKY24092.1 194 SVVAPLLAARVffKNTNEgdltNVQWTYLGIAAFVFCLAVVFFFAPIPE 242
                 ****999876664666669***99****999999999888888888877 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.26
                 HHHHHHHCGGGTHHHHHHHHT.STT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHH.HHHHHHHHHHHH CS
    Sugar_tr  11 lfgYdtgvigafltllkfakn.fglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslli.aavlfvigavlq 93 
                 +f Y  + +g+++ ++++  +  ++s+s++s+     ++ l  ++f +G+++ + ++ ++     R   +++ +a++++i+a++ 
  KKY24092.1 279 QFCYVGAQVGVASQFINYTVEsAKVSHSVASD-----RYALAQGLFAIGRFAAAGLFVFVK---PRWVLMAFmTAIMVFIAAAMG 355
                 66666666776666666443312344444433.....457777777777776654444333...333333332334444444444 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.0072
                 HHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHH.HHHHHHHHHCHHH.....T- CS
    Sugar_tr 324 aagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanfl.isllfpiiteaig.....gg 416
                 +a+m++ +v+++  a+++v ++   ++va+  ++lf   f+ +       + + +f++s+R+++      ++w++  +  + lfp +t+ +      + 
  KKY24092.1 340 MAFMTAIMVFIA--AAMGVWGE---GGVAMLSLVLF---FESC-------IFPTIFTLSIRGLGRHTKRGSSWIVAAVsGGALFPSLTGLVAdhkdyHV 423
                 445555555555..77777776...77777766666...7733.......44557999****************98873579*********99999999 PP

                 HHHHHHHHHHHHHHHHHHHHS--STT CS
    Sugar_tr 417 yvflvfaglavlfiifvfffvpetkg 442
                  ++++ ag+ v+f++ +++ + + k 
  KKY24092.1 424 AMGIPLAGFFVAFAFPIYLNTTCAKE 449
                 99999999999999999988877765 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2      0.73   4.4e+03      34      50 ..      53      69 ..      44      78 .. 0.60
   2 ?    2.2   1.7      0.02   1.2e+02       6      48 ..     119     160 ..     105     169 .. 0.61
   3 ?   12.0   0.0     2e-05      0.12       4      62 ..     186     251 ..     183     263 .. 0.85
   4 ?   -1.7   4.6      0.32   1.9e+03      11      47 ..     320     356 ..     312     362 .. 0.44
   5 ?    3.2   0.0     0.011        63       4      73 ..     395     466 ..     392     484 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.73
     DUF4131 34 lllllllllallgfalr 50
                + l+l+  l++l+ +++
  KKY24092.1 53 IPLTLVTTLFFLWGFAY 69
                44555555555555444 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.02
     DUF4131   6 alvllalllllllllllllrrrprrrvllllllllllallgfa 48 
                  + ++  l+l  + +l+++     +r +++++  l+++++g+ 
  KKY24092.1 119 RWTFISGLCLYGIGALMFWP-SAVYRSFGGFCGSLFIVGSGLS 160
                 55566666666666666655.5555555555555555555543 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 2e-05
     DUF4131   4 plalvllalllllllllllllrr.......rprrrvllllllllllallgfalrapqpnandlsql 62 
                 + ++ +++++++ ll++ +++++       + ++++l++++++++la+++f+++ p+ +  d + +
  KKY24092.1 186 SQSIQAVGSVVAPLLAARVFFKNtnegdltNVQWTYLGIAAFVFCLAVVFFFAPIPEVTDADMALQ 251
                 566778999999999999998889*****99999*******************9999888776655 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.32
     DUF4131  11 alllllllllllllrrrprrrv..llllllllllallgf 47 
                 a++ ++++ l+++   +pr+    ++++++++++a++g+
  KKY24092.1 320 AIGRFAAAGLFVFV--KPRWVLmaFMTAIMVFIAAAMGV 356
                 33333333333332..44444422444444444444444 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.011
     DUF4131   4 plalvllalllllllllllllrrrprrrvllllllllllallgfalrapqpnandlsqlles......gqeviveG 73 
                 ++++v+ +++++l+  l  l  + + ++v++++ l+ +++++ f ++  ++ a++l+ + e       +     +G
  KKY24092.1 395 SSWIVAAVSGGALFPSLTGLVADHKDYHVAMGIPLAGFFVAFAFPIYLNTTCAKELDGYRETkigyvdE----ARG 466
                 566666666666666666666669999999999999999999999999999999998888766544432....333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.48
# Mc/sec: 3081.90
//
Query:       KKY24093.1  [L=561]
Description: hypothetical protein UCRPC4_g02559 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.48
# Mc/sec: 3522.61
//
Query:       KKY24094.1  [L=1121]
Description: putative leucyl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-28   99.0   0.0    2.5e-19   69.0   0.0    3.3  3  tRNA-synt_1    tRNA synthetases class I (I, L, M and V)
      5e-16   58.4   0.0    3.5e-09   35.9   0.0    2.3  2  tRNA-synt_1g   tRNA synthetases class I (M)
    5.7e-13   49.1   0.5    1.2e-12   48.1   0.5    1.6  1  Anticodon_1    Anticodon-binding domain of tRNA
      5e-07   29.4   0.0      1e-06   28.3   0.0    1.4  1  tRNA-synt_1e   tRNA synthetases class I (C) catalytic domain
  ------ inclusion threshold ------
      0.067   13.3   0.0       0.14   12.2   0.0    1.5  1  Herpes_UL49_5  Herpesvirus UL49.5 envelope/tegument protein


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.1e-09   3.8e-06      20      84 ..      70     134 ..      60     156 .. 0.84
   2 ?   -1.7   0.0      0.18   6.5e+02     319     347 ..     164     192 ..     144     199 .. 0.87
   3 !   69.0   0.0   6.9e-23   2.5e-19     114     601 ..     222     803 ..     202     804 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.1e-09
  tRNA-synt_1  20 kekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekkl 84 
                  ++ +++  +   Py +G+lH+Gh+++ +  ++   ++rm Gk++l+  G+ + G++i+a  +k +
   KKY24094.1  70 EQVPKYFGTFAYPYMNGTLHVGHSFTISKVEFNAGFQRMIGKRTLFPLGFHCTGMPIKACADKLV 134
                  556777777888*********************************************99888765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.18
  tRNA-synt_1 319 edgtlteeaaefeglkvfdarkkvveelk 347
                  ++g+ +e++++f+g k ++a k+v ++ +
   KKY24094.1 164 TQGQTKEDITKFSGKKTKAAAKTVKAKYQ 192
                  579999*****************988765 PP

  == domain 3  score: 69.0 bits;  conditional E-value: 6.9e-23
  tRNA-synt_1 114 eirkqvkrlGvsvDfdreylTldke..leeavkevfvrladkgliyrgkklvnwstklktalselEveykdkkdalihvafpladkee.......... 199
                     ++++++G+++D+ r+ +T d +  +   +++ + rl+    i  g++   +s+k   +  + +    +  +++ + a +l+ ke           
   KKY24094.1 222 LCMQDLNDFGARIDWRRQFVTTDANpfYDSFIRWQMNRLHALNKIQYGNRYTIYSPKDGQPCMDHDRSEGEGIGPTEYTALKLKVKEWsetaeqaieg 319
                  5678999**************9976536667899******************************9999999998887777777433333345556666 PP

  tRNA-synt_1 200 .......vklviaTTtPeTllgdtavavnpeldyv....itkeklilaeallkslv......kke...sek...kiledergkeLegkevelpl..vn 272
                         v+++ aT +PeT+ g+t   v p + y+      +e+++       +++      ++e    ++   + + +  g+ ++g  v+ pl  + 
   KKY24094.1 320 kipkdanVYFIPATLRPETMYGQTCCFVGPKISYGifkaSGNEYYVCTPRAAWNMAfqgtffDAEqfpRDQselQPVVEAVGSTFVGTLVNAPLsiHT 417
                  66777779***************************999633344443322222222111111211112222312334577789999999999998888 PP

  tRNA-synt_1 273 rkipiiaddyvdkeaGtGvVkiaPahdedDyevgkkynl..............evinildedgtlteea............................. 327
                    i+i+  + v + +GtGvV   P   +dD+++ ++                 e+i i+++  t+ + +                             
   KKY24094.1 418 DGIRILPMESVLATKGTGVVTSVPSDSPDDFATVRDLAKkaeyygikkewaelEIIPIIETP-TYGNLTapklveqmkinspkdatqlaaakdlayte 514
                  99*****************************9765433333445558888885555555543.33333347799999********************* PP

  tRNA-synt_1 328 .........aefeglkvfdarkkvveelkekglllkaekiehsvpfcerskkpiiyrateqWfvrvke....ladaalkave..kvqfvpkskekrya 410
                           +ef+g++v++a++kv +++ + g  +   +   s  + +rs++  ++    qWf +  e     ++aal+ v+    +++p+++ + ++
   KKY24094.1 515 gfykgkilvGEFAGQSVQEAKDKVKKSIIDGGDGFPFAD--PSGKVVSRSGDECVVAYLGQWFLNYGEqdpeWQKAALDWVThgLNTYYPETA-NGFK 609
                  ****************************99997665554..45556899**999999*******99887778999999999986677888765.6788 PP

  tRNA-synt_1 411 swleniqdWciSRqrwWGhriplfvsketeevvvreelkelvagreeeeaekkalekeakdklkkekgelekdedvlDvWFsSgswpfstl....... 501
                    le  + W+  R    G ++p +  k   e    +++ +++  ++++  +    +++    l+ + +++   ++  D+ F  + +   ++       
   KKY24094.1 610 ANLEWLNRWACARTYGLGSKLP-WDPKFLVESLS-DSTIYMAYYTVAHLLHGDRYARTP-GVLHIKPEQM--TDEAWDCVFGNADVSEDVVkrsgisq 702
                  8999999**************9.55555444444.222222222222222222222222.2332233333..34566666665554433331110011 PP

  tRNA-synt_1 502 gypeedteelkkffpadmlleGlDiirgWvarlillslaltgsePf.kevlvhglvrdeeGrKmSKslgNvidpldvikkygadalRltli.lsdvgr 597
                  ++ e+ ++e++  +p d+ ++G D i   ++  + + +al+ ++ + ++v  +g ++  +G KmSKs gN +  ++  kk gada R +l+   d  +
   KKY24094.1 703 ESFEKMRREFEYWYPLDIRSSGKDLIPNHLTFFLYVHIALFPKKFWpRSVRANGHLL-LNGSKMSKSTGNFLTLSEATKKFGADATRIALAdGGDGIE 799
                  333446899********************************9996537899999776.58******************************98888888 PP

  tRNA-synt_1 598 dinl 601
                  d n+
   KKY24094.1 800 DANF 803
                  8876 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   6.3e-08   0.00023       4      71 ..      78     145 ..      75     154 .. 0.91
   2 !   35.9   0.0   9.6e-13   3.5e-09     286     370 ..     721     807 ..     698     812 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 6.3e-08
                   EE--B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHH CS
  tRNA-synt_1g   4 ttalpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvh 71 
                   t a pY+ng+lH+Gh  ++ +    a ++r+ g+ +lf  g    G+pi+  A+k   +++++ ++++
    KKY24094.1  78 TFAYPYMNGTLHVGHSFTISKVEFNAGFQRMIGKRTLFPLGFHCTGMPIKACADKLVDDVKKFGKNFE 145
                   789**************************************************999888888877665 PP

  == domain 2  score: 35.9 bits;  conditional E-value: 9.6e-13
                   EEEEGGGHHHHHTHHHHHHHH..TT----S-EEEE--EEE--------------HHHHHHHH-HHHHHHHHHHHS-TTS-EEE-HHH CS
  tRNA-synt_1g 286 hfigkdiikFHtifwPaillg..aelklpkkvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaaeapekkDldfswed 370
                      gkd i+ H  f+  + ++   +   p++v a+++l ++g+K+SkS g++ + +ea++++ ad+ R  la  ++  +D++f++++
    KKY24094.1 721 RSSGKDLIPNHLTFFLYVHIAlfPKKFWPRSVRANGHLLLNGSKMSKSTGNFLTLSEATKKFGADATRIALADGGDGIEDANFEEKS 807
                   3459***************998766779*******************************************************9875 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.5   3.3e-16   1.2e-12       1     139 [.     840     966 ..     840    1005 .. 0.80

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 3.3e-16
  Anticodon_1   1 drwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedkraaqevllevletllrllaPfmPfitEelwqreeeel.g 97 
                  d+ ++ e+n lv +++eay +++f+ a+++  + f+ +  d+y e+         +      +e+   ++     l+ P++P+++E++w     e+ +
   KKY24094.1 840 DKLFIDEMNVLVTQTKEAYSRMEFKIALKSGLYDFQSAR-DFYREACSASG---IPL----HRETFTQYVTLQALLICPIAPHFAEYVW----LEIlK 925
                  788999************************999988877.******97654...332....33999999999999**************....55659 PP

  Anticodon_1  98 kkesimlaewpe.kaeel..ekeleeeevellkeivkairklrse 139
                  k++si  a+wp+ ++e++  +     ++ e++k++ + i ++ ++
   KKY24094.1 926 KPTSIQFAQWPSdTPEQNvaY----TAAREYIKSTSSSITSAEAQ 966
                  99*********9666544542....44567766666666653332 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   2.8e-10     1e-06     207     281 ..     717     792 ..     705     808 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 2.8e-10
                   SEEEEEEEGGGTTTHHHHHHHHHHHHSS.S--EEEEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHH CS
  tRNA-synt_1e 207 eidihsGGiDLafPhhenelaqseaafd.kqlvkyflhnghlkiegekmsksLknfitikdvlkkfdprqlRllll 281
                    +di s G+DL+  h    l  + a+f  k + +    nghl ++g kmsks +nf+t+ ++ kkf + + R++l+
    KKY24094.1 717 PLDIRSSGKDLIPNHLTFFLYVHIALFPkKFWPRSVRANGHLLLNGSKMSKSTGNFLTLSEATKKFGADATRIALA 792
                   68**********9999999********955577888899*********************************9987 PP

>> Herpes_UL49_5  Herpesvirus UL49.5 envelope/tegument protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     4e-05      0.14      39      74 ..     875     907 ..     849     918 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4e-05
  Herpes_UL49_5  39 eeredFwhaaCsarGvsiaessaasvlFYisLlavl 74 
                    ++++dF+  aCsa G+++   +      Y++L a l
     KKY24094.1 875 QSARDFYREACSASGIPLHRETFT---QYVTLQALL 907
                    5689**************988754...466666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.52
# Mc/sec: 6452.31
//
Query:       KKY24095.1  [L=497]
Description: hypothetical protein UCRPC4_g02561 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-21   76.4   0.6    9.3e-21   73.8   0.2    2.6  2  DUF1992   Domain of unknown function (DUF1992)
  ------ inclusion threshold ------
       0.01   15.6   1.1      0.027   14.2   1.1    1.8  1  RPAP1_N   RPAP1-like, N-terminal


Domain annotation for each model (and alignments):
>> DUF1992  Domain of unknown function (DUF1992)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.25   2.3e+03       8      27 ..      57      76 ..      56      86 .. 0.80
   2 !   73.8   0.2     1e-24   9.3e-21       1      70 []     155     226 ..     155     226 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.25
     DUF1992  8 eAierGeFdnlpgrGKPLpl 27
                eAie+ +++ l  + KPL l
  KKY24095.1 57 EAIEDSALRMLDDAHKPLRL 76
                8999999999*99****988 PP

  == domain 2  score: 73.8 bits;  conditional E-value: 1e-24
     DUF1992   1 laEerIreAierGeFdnlpg.rGKPLpldd.endplvpeeerlanrilknagvlPpeielrkeieelkellr 70 
                 la+erI++Ai rG+F+n+++ +G  +++d  +++p+++++e+++n+i+++++++Pp+ie+++e+ ++++++r
  KKY24095.1 155 LANERIEDAISRGQFRNIQKgKGVNIERDYnASSPFLDTTEYFMNKIIQKQEIVPPWIEKQQELVKAAQTFR 226
                 79***************9998*******5589************************************9997 PP

>> RPAP1_N  RPAP1-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.1   3.1e-06     0.027      13      33 ..     121     141 ..     120     145 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.1e-06
     RPAP1_N  13 sMspeEIeeereeLlesLdPk 33 
                 +M+++E+e+ r+eL e++ P+
  KKY24095.1 121 DMTEAEREQMRKELKERFTPS 141
                 5*****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3410.48
//
Query:       KKY24096.1  [L=329]
Description: putative alpha beta hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-16   59.6   0.1    1.8e-11   44.2   0.1    2.2  2  Abhydrolase_1  alpha/beta hydrolase fold
    2.1e-12   48.1   1.5    2.6e-12   47.8   1.5    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.1     2e-15   1.8e-11       2      97 ..      60     148 ..      59     168 .. 0.87
   2 !   13.6   0.0   4.2e-06     0.038     216     254 ..     276     314 ..     203     315 .. 0.93

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 2e-15
                    EEEEE-STTTCGGG...GTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdv...waerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaey 94 
                    ++ ++hGlpgs      w +  +++ L   g+++i++D +G g Ss+ p+      ++ +  +d++++ ++l++d+  +vG+S GG +a a a + 
     KKY24096.1  60 PVFLFHGLPGSRLEgreWEQ--IGRKL---GARIIATDRPGMGLSSFKPDR-----NLLDWPADVKYLAQHLNLDHYRVVGGSGGGPFAVACAKML 145
                    899*******6655555999..99988...9******************98.....7899**********************************99 PP

                    GGG CS
  Abhydrolase_1  95 per 97 
                    p++
     KKY24096.1 146 PKK 148
                    874 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 4.2e-06
                    EEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHH CS
  Abhydrolase_1 216 visgtsDplvppkaledlaqllpkkrlvvisdagHlafl 254
                    +++gt+D  +p ++++++a++l++++l+ +++a H+ ++
     KKY24096.1 276 LWWGTDDEHTPVRMGRFMASHLKNAKLKEFPGATHMTVF 314
                    78*********************************9987 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   1.5   2.9e-16   2.6e-12       1     216 [.      61     320 ..      61     324 .. 0.59

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 2.9e-16
                    EEEE--GC........GCHHHHHHHHCCTCEEEEE--TTST....S-GGCS--HHHCHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC... CS
  Abhydrolase_6   1 vlllHGagss...assWlvapLaallaagvhvlapDlpGhG....rsdpppldledladlaalldelaagggpvvlvGHSlGGalalaaapla... 86 
                    v+l HG+++s   ++ W   ++ ++l+a++  +a+D+pG+G     +d+  ld+   ad+  l+++l  ++ +v  vG S GG  a a a+ +   
     KKY24096.1  61 VFLFHGLPGSrleGREWE--QIGRKLGARI--IATDRPGMGlssfKPDRNLLDW--PADVKYLAQHLNLDHYRV--VGGSGGGPFAVACAKMLpkk 148
                    5788*99988888****9..999999****..*********7555556666888..577777777775456666..********999955555899 PP

                    ...EE.EEES-......----TTT...S----TTHHHHHH......TT-CCCCHCCH.............S-HSCCCCHHH..C......CCCHCH CS
  Abhydrolase_6  87 .lvvg.vlldppp....talpagl...laaalelllalla......llrllawlsre.............plprlfladed..a......daawra 146
                     l++  +l    p    ++ ++++   +a+ +  + ++ +                               l +++ +d+   +       ++w +
     KKY24096.1 149 nLHAVgILAGVGPwkylGGKGMRWkgrIAFSMLAYTPWVTkwvvnsQ---------LvpaahhsdpqvfkNLMQTWKDDLNekDrtvfqdSRTWDD 235
                    84444244444333444333333333222222222222223222221.........0222233111222223334444444431445566899999 PP

                    CCCGHHHHCC.......HHCHTTCCHHTT-TTGC......EEECTT-CHHHHCHHCCCH..STTEEETCE...SSS..-HHHHSHHH CS
  Abhydrolase_6 147 rlarlaalla.......glgllpaaawadlpvpl......lvlggeDplvprllerlla..qagarlpvvlpgaGH..lphleepde 216
                    +++ ++ ++        ++g    a+w   ++ +      l++g++D++ p  + r++a  +  a+l +++pga H  +++l + +e
     KKY24096.1 236 TVDVMRECFRigsegylQDGRIMTADWGFELEEVpfegvkLWWGTDDEHTPVRMGRFMAshLKNAKL-KEFPGATHmtVFFL-HREE 320
                    9999998888544333222222344444444444888776664577777774477999999999999.********975555.6655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2444.84
//
Query:       KKY24097.1  [L=343]
Description: putative dihydrodipicolinate synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-24   84.5   0.0    6.5e-14   51.3   0.0    2.1  2  DHDPS         Dihydrodipicolinate synthetase family
    1.2e-11   44.3   0.0    1.7e-11   43.9   0.0    1.2  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> DHDPS  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   8.3e-12   7.4e-08       4      84 ..      16     102 ..      14     108 .. 0.82
   2 !   51.3   0.0   7.2e-18   6.5e-14     139     233 ..     109     204 ..     103     215 .. 0.92

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 8.3e-12
                 EEEEE----B..-TTSSB-HHHHHHHHHHHHHCT-SEEEESSCCCTGGGS-HHHHHHHHHHHHHHHTT....SSEEEEE---SSHHH CS
       DHDPS   4 giitalvtpf..dedgkldkealrklieflinkgvdglvvaGttGEsatlsteekeqlveiaveaakg....ripviagvGsnstse 84 
                 g++ ++++ +  d  ++ld  a  k   +li  gvdglv  Gtt E+ +ls ee++q ++ia++aa +    + p++ag+ ++s++e
  KKY24097.1  16 GVFCPVISLYkpDARQTLDPDATYKYFSYLIRGGVDGLVLQGTTAEAVLLSPEERMQNIQIARKAALDlgieKFPLVAGISGQSVNE 102
                 66777777762245689*********************************************9998543333778888877777766 PP

  == domain 2  score: 51.3 bits;  conditional E-value: 7.2e-18
                 HSHHHHHHHHHHHHTSTTEEEEEE-SS-CTHHHHHHCC.CSTTSEEEES-GGGHHHHHHTT-SEEEESCHHCHHHHHHHHHHHHHTT-HHHHHHHH CS
       DHDPS 139 tgadlspetvkrLaelenivgvKeavgdleevikikke.vgkdlviysGddelllsalslGadGvisvtsniagermrqlikalkeGdlaeaaeln 233
                 +g dl+ +++ +La+ +nivgvK + g+  +v+++ +e + +++++++G+ + l + l  G+ G ++   ni ++ +++l+ ++k G+++ea  ++
  KKY24097.1 109 AGIDLNSDVISALAQHPNIVGVKLTCGNCGKVTRLSEEyAPDQFSVFAGQSDWLIPCLIGGGSGCVTGVGNIFPKSVANLYSLWKSGKVDEAVRFQ 204
                 489*******************************987626788************************************************97765 PP

>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   1.9e-15   1.7e-11       2      77 ..     278     338 ..     277     343 .] 0.90

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 1.9e-15
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTT CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaei 77 
                   +g+Gtw+        + ea +++++al aG+++fD+A++Y    +e ++G+++k+  ++r+e++++tK+      +
    KKY24097.1 278 IGFGTWKAA------PGEAGKAVETALNAGYRHFDCAPLY---GNEAEIGQVFKSTAVPRDELFVTTKL------W 338
                   99****555......78***********************...9************************9......3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2180.74
//
Query:       KKY24098.1  [L=832]
Description: putative het domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-11   44.3   0.3      5e-11   43.1   0.3    1.6  1  HET       Heterokaryon incompatibility protein (HET)


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.3   2.8e-15     5e-11       1     146 []     354     495 ..     354     495 .. 0.67

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 2.8e-15
         HET   1 YeaLSYvW....gdskekeeievngklleltenledalqvl.rk..lgerylWiDaiCInQdddk..ekskqvqlmadIYsnAelvivalgsesedsgl 90 
                 Y + S+vW    g+sk+ ++++ + +   l +  +  l +  r+   ++++ WiD +C+  + ++   ++k ++ mad+Ys+A+ v+v   +   +s  
  KKY24098.1 354 YICFSHVWahglGNSKR-NALP-SCQMQALHRYTYPILGIRaRQsdVRISFFWIDTLCVPVQPEHahLRKKAIAAMADVYSQARHVLVIDEALARTS-- 448
                 8999****775544443.3332.3355556666666665442554456688********86555447899******************988777655.. PP

         HET  91 lalealralkkekleekeielkksaekkkellekeeraieellespwfkRvWvlQE 146
                   l+++++  ++++    ++l       + ++ ++++ + +++ s w++R+W+lQE
  KKY24098.1 449 --LKRFEEDLMSREVG--ATLA-----ASASVINQKELTFAIILSDWWRRLWTLQE 495
                 ..33332222222222..2222.....2346789999999***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (832 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 5690.44
//
Query:       KKY24099.1  [L=585]
Description: hypothetical protein UCRPC4_g02565 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.097   12.8   0.0       0.47   10.6   0.0    2.0  2  GCN5L1    GCN5-like protein 1 (GCN5L1)


Domain annotation for each model (and alignments):
>> GCN5L1  GCN5-like protein 1 (GCN5L1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.12   2.2e+03      96     113 ..       9      26 ..       7      27 .. 0.85
   2 ?   10.6   0.0   2.6e-05      0.47      50      90 ..     330     370 ..     309     372 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.12
      GCN5L1  96 tienDlksitealeyvyk 113
                  i  D++ i e+l+ ++k
  KKY24099.1   9 LIQCDVHHIHETLQHLCK 26 
                 6899*********99876 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 2.6e-05
      GCN5L1  50 kklekeakalqanvakfakqtdqWlalvesfnsalkeiGDv 90 
                 ++le+  k+l  ++++f+kq d+W + ++++ +   +iGD+
  KKY24099.1 330 ERLEQLPKSLVVQLNHFSKQLDEWFTKFSAIFRPNPQIGDF 370
                 589*************************9998888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3899.99
//
Query:       KKY24100.1  [L=328]
Description: putative nucleoside-diphosphate-sugar epimerase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-19   70.3   0.0    2.1e-19   69.9   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    4.7e-11   42.2   0.0    6.2e-11   41.8   0.0    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    6.9e-10   38.8   0.0      1e-09   38.3   0.0    1.2  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    6.6e-08   32.0   0.0      0.001   18.3   0.0    2.5  2  NAD_binding_4    Male sterility protein
    2.5e-07   30.1   0.0    3.9e-07   29.5   0.0    1.3  1  RmlD_sub_bind    RmlD substrate binding domain
    8.2e-07   29.1   0.1    1.7e-06   28.0   0.1    1.5  1  KR               KR domain
     0.0023   17.1   0.0      0.011   14.9   0.0    1.9  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
     0.0074   16.4   0.0      0.011   15.8   0.0    1.3  1  Ldh_1_N          lactate/malate dehydrogenase, NAD binding do
  ------ inclusion threshold ------
      0.056   12.9   0.0       0.13   11.7   0.0    1.6  2  adh_short        short chain dehydrogenase


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   1.1e-22   2.1e-19       2     199 ..      13     213 ..      12     242 .. 0.83

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 1.1e-22
                 EEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHC...EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekg..yevigldrlssasntarledl...elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgt 95 
                 l+tGa Gf+G+al+ al+e     ++i  d l+ + +++ ++ +   +  ++dltd++alerlf + + ++v++l ++ + aa++ + +  +  n+  +
  KKY24100.1  13 LITGAGGFLGQALASALMEDAavSKIILTDVLEPSIPSSMRDSVcevQALKADLTDKNALERLFTS-DLTHVYLLHGIMSGAAEA-HLELGLSVNVDSM 109
                 9*******************99666*************999999*********************7.9*******7744444433.33455789***** PP

                 HHHHHHHHHHTCT.EEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTT.S-TTSTTSHHHHHHHH CS
   Epimerase  96 lnlleaarkagvk.rllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGpr.ngegevsrvipalirk 192
                 + +++ +r+ ++   ++f sS +v+G++ae   + +t+++   p+s Y+a+K+  e l+ ++ + + l+a i+rl +++    +++g  s++ +a+ r 
  KKY24100.1 110 RLIMDILRRVKPAiPVIFPSSLAVFGPMAE--GSVVTESTMPLPQSSYGAQKQICEVLLNDFSRRGLLDARIVRLPTIIVRPgKPTGAASSFCSAIFRE 206
                 *********98878****************..44444444456********************************999887768888899999999999 PP

                 HHTTSSS CS
   Epimerase 193 ilegkqe 199
                  l+g+++
  KKY24100.1 207 PLNGEKS 213
                 9998842 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   3.1e-14   6.2e-11       1     193 [.      13     204 ..      13     226 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 3.1e-14
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleeal.egvdvvihlaslvdvagkltedeimkvnvkGTrn 98 
                 ++tG++GFlG+al ++L++   + ++   D+ e +  ++   +v   + +++D+tdk+ le+    +   v  l++++  a + + +   +vnv   r 
  KKY24100.1  13 LITGAGGFLGQALASALMEDAAVSKIILTDVLEPSIPSSMRDSVCEVQALKADLTDKNALERLFtSDLTHVYLLHGIMSGAAEAHLELGLSVNVDSMRL 111
                 69*****************************99998888877777777*************9861566777778999999999**************** PP

   3Beta_HSD  99 vleacvkagvrv.lvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlkngg..rlyTcaLRpagiyGegdkllvpll 193
                 +++  ++    + +++ Ss+ v gp + +  ++    ++   +l+q+ y   K++ E l+     r l +    rl T+ +Rp    G  +++ ++ +
  KKY24100.1 112 IMDILRRVKPAIpVIFPSSLAVFGP-MAEGSVV----TESTMPLPQSSYGAQKQICEVLLNDFSRRGLLDARivRLPTIIVRPGKPTGAASSFCSAIF 204
                 ***987765433389**********.4444444....34556789**************999888888887778999999999776666666666555 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0     5e-13     1e-09       1     175 [.      13     177 ..      13     184 .. 0.82

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 5e-13
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    LiTG  Gf G+ la  L+e    v  i+  + +    +i + ++d       +++  k+DltD+++lerl+ + + + vy L +    +   +  e
     KKY24100.1  13 LITGAGGFLGQALASALMED-AAVSKIILTDVLE--PSIPSSMRDSV----CEVQALKADLTDKNALERLFTS-DLTHVYLLHGIMSGAAEAHL-E 99 
                    9*****************98.5566666555442..24444444432....36899***************98.599*****988776666665.8 PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSS.B-TTS-----SHHHHHHHHHHHHHHHHHHHH---E CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevp.qtEttpfyPrsPYaaaKlyadwivvnyreayglfa 175
                      + vnv  +  ++++ r+++  + + +++ S+  v+G ++e   +tE+t   P+s Y+a K +++ +  ++ +   l a
     KKY24100.1 100 LGLSVNVDSMRLIMDILRRVK--PAIPVIFPSSLAVFGPMAEGSvVTESTMPLPQSSYGAQKQICEVLLNDFSRRGLLDA 177
                    9999***************75..7899*************986637**********************999987655555 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   8.4e-05      0.17       1      27 [.      14      40 ..      14      45 .. 0.90
   2 !   18.3   0.0   5.2e-07     0.001     103     212 ..      97     191 ..      68     213 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.4e-05
                   EE-TTSHHHHHHHHHHHHHS-.T.EEEE CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpev.kiyl 27
                   +TGa GFLG+ L   L+++ + v ki+l
     KKY24100.1 14 ITGAGGFLGQALASALMEDAA-VsKIIL 40
                   8****************9987.669986 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 5.2e-07
                    TSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE.GGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHHHHHHHHHH--- CS
  NAD_binding_4 103 pykellrvNveGtrevlelakklkklkvllhvST.ayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEklvrearrrsglp 197
                    +++  l+vNv+++r ++++ +++k   ++++ S+ a++ +  eg v                 +++++   +  Y   K + E l+++ +rr+ l 
     KKY24100.1  97 HLELGLSVNVDSMRLIMDILRRVKPAIPVIFPSSlAVFGPMAEGSV----------------VTESTMPLPQSSYGAQKQICEVLLNDFSRRGLLD 176
                    5566789***************************999999999887................344555566679********************** PP

                    EEEEEE-EEE--SSS CS
  NAD_binding_4 198 vvivRpsiitgeskt 212
                    + ivR+++i+ ++ +
     KKY24100.1 177 ARIVRLPTIIVRPGK 191
                    *******99996543 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0     2e-10   3.9e-07       1     139 [.      10     169 ..      10     192 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 2e-10
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT.....................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltre.....................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaay 75 
                    m++l+tGa+G lG++La +l e+  +v  +  +                     ++dltd++a+++l+ +   +v    +      +aE + e+  
     KKY24100.1  10 MRLLITGAGGFLGQALASALMEDA-AVSKIILTdvlepsipssmrdsvcevqalKADLTDKNALERLFTSDLTHVYLLHGIM--SGAAEAHLELGL 102
                    89****************999765.4433322235799******************************99777665555554..468********* PP

                    HHHTHHHHHHHHHHHHCT..-EEEEEEEGGGS-S-TTS-.B-TTS----SSHHHHHHHHHHHHHHHH CS
  RmlD_sub_bind  76 avnaeavealAeaaaavg..alLihvStDyVFdGekkrp.YeeddetsPlnvYGrtKlaGEqavlaa 139
                     vn+++ + + +  ++v+  +++i+ S+  VF   ++    +e+  + P++ YG+ K   E   ++ 
     KKY24100.1 103 SVNVDSMRLIMDILRRVKpaIPVIFPSSLAVFGPMAEGSvVTESTMPLPQSSYGAQKQICEVLLNDF 169
                    ***************99755899*********99866665999999***********9999888763 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.1   8.7e-10   1.7e-06       4     105 ..      13     109 ..      11     114 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 8.7e-10
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 litG+ G LG++la  l+e++a + ++l+     ++   +  ++++++ +ev++++aD++dk+a+e+l+++  ++   ++G++  A  ++ +l  +++ 
  KKY24100.1  13 LITGAGGFLGQALASALMEDAAVSKIILTDV--LEP---SIPSSMRDSVCEVQALKADLTDKNALERLFTSDLTHVYLLHGIMSGAAEAHLELGLSVNV 106
                 9******************996555555555..223...3457799************************9999999******9998777666666666 PP

                 HHH CS
          KR 103 edl 105
                 +++
  KKY24100.1 107 DSM 109
                 555 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.5e-06     0.011       1      74 [.      12      77 ..      12     112 .. 0.78
   2 ?   -0.5   0.0      0.27   5.3e+02     134     156 ..     151     173 ..     143     214 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.5e-06
                     EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekale 74
                     +l+tGagG +G++l + +++   ++kiil +  E ++ +  ++   e++         ++ +d++dk+ le++++
       KKY24100.1 12 LLITGAGGFLGQALASALMEDaAVSKIILTDVLEPSIPSSMRDSVCEVQ---------ALKADLTDKNALERLFT 77
                     59*****************99799**********998765554322222.........33467777777777776 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.27
                      --SHHHHHHHHHHHHHHHGGG-- CS
  Polysacc_synt_2 134 PtnvmGatKrlaekllqalakes 156
                      P + +Ga K+++e ll  ++++ 
       KKY24100.1 151 PQSSYGAQKQICEVLLNDFSRRG 173
                      78899*******99999888765 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.5e-06     0.011       2      45 ..      11      54 ..      10     124 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.5e-06
                EEEEETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHHHHHHHHHH CS
     Ldh_1_N  2 kvavvGaaGgiGqslalllankkladelaLlDiakekleGvald 45
                ++ ++Ga+G+ Gq+la +l++   ++++ L D+ +  ++  + d
  KKY24100.1 11 RLLITGAGGFLGQALASALMEDAAVSKIILTDVLEPSIPSSMRD 54
                789******************************98877766665 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.7e-05      0.13       4      86 ..      13      94 ..      11     115 .. 0.77
   2 ?   -2.6   0.0       1.6   3.1e+03      21      54 ..     246     279 ..     237     301 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.7e-05
                EEESTTSHHHHHHHHHHHHTT-..EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE--- CS
   adh_short  4 lvtGassGIGraiakelakeGa..kvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAG 86
                l+tGa++ +G+a+a +l+++ a  k++++d   e+   + +++++   ++ a+++D+td++++e+l+     ++  l+ ++ +A+
  KKY24100.1 13 LITGAGGFLGQALASALMEDAAvsKIILTDVL-EP--SIPSSMRDSVCEVQALKADLTDKNALERLFTSDLTHVYLLHGIMSGAA 94
                8*****************99763233444444.33..368888888888****************99988887777777777776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.6
                 HHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEE CS
   adh_short  21 akeGakvvvvdrseekleevakelkeegakalai 54 
                  keG +++ +  +  +++++++ l+e + + ++ 
  KKY24100.1 246 FKEGSRIINLPGRTVTVQQMLDALNEVSGEETVS 279
                 5666666666666666666666666664444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2077.52
//
Query:       KKY24101.1  [L=457]
Description: putative cytochrome b2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.7e-107  359.5   0.0     2e-107  359.2   0.0    1.0  1  FMN_dh        FMN-dependent dehydrogenase
    0.00025   20.3   0.0    0.00043   19.5   0.0    1.3  1  Glu_synthase  Conserved region in glutamate synthase
     0.0069   15.4   0.0      0.013   14.5   0.0    1.4  1  IMPDH         IMP dehydrogenase / GMP reductase domain
  ------ inclusion threshold ------
      0.037   13.3   0.0        0.1   11.9   0.0    1.7  2  ThiG          Thiazole biosynthesis protein ThiG
      0.075   13.2   0.0        0.3   11.3   0.0    2.0  2  Cyt-b5        Cytochrome b5-like Heme/Steroid binding domain
       0.13   11.3   0.0       0.23   10.5   0.0    1.3  1  Dus           Dihydrouridine synthase (Dus)
       0.15   11.2   0.0          1    8.5   0.0    2.0  2  IGPS          Indole-3-glycerol phosphate synthase


Domain annotation for each model (and alignments):
>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  359.2   0.0  7.8e-111    2e-107       1     347 [.      80     424 ..      80     425 .. 0.92

  Alignments for each domain:
  == domain 1  score: 359.2 bits;  conditional E-value: 7.8e-111
                 HHCCS-HHHHHHHH--STTSHHHHHHHHGGGGEEE---SSSS-SS-B--EEETTEEESSSEEE--BSTGGGTSTTHHHHHHHHHHHHTS-EEEETT-SS CS
      FMN_dh   1 ArkrlpkkafayvaggagdevtlrenraaferirlrprvlrdvskvdlsttllGqklslPvliaPvglaklahpdgelalaraaakagipfvlstvast 99 
                 Ar+ +++kafa+++++a+d v++++n +  ++i lrprvlr+v+++++s ++lG+++s+P++++P+++a+lahpdgela+a+++a++gi++++s++as+
  KKY24101.1  80 ARRFFTPKAFAFYSSAATDLVSHNANLSIHRKIMLRPRVLRNVKNANISRKILGHDCSAPFFVSPAAMARLAHPDGELAIAQGCASQGIIQTISSNASF 178
                 7888999******************************************************************************************** PP

                 -HHHHHH..HHTT-EEEEEE-CSSHHHHHHHHHHHHHCTESEEEEESSTSS---BHHHHHCT--BSTT-T.G.TTGGGSTSGSCCTTH..THHHHHHCC CS
      FMN_dh 100 sleevaa..aaegplwfqlyvpkdrelteellkraeaagykalvltvDtpvlgkRerdlrngfslppklklrnllqelakpewaaealkkasaaaefvg 196
                 +l ++++  + + p++ qlyv+++r++t+ ll++a+ +g+ka+++tvD+p++gkRe+d+r   +++ + +++ +++ ++k+ +           +++++
  KKY24101.1 179 PLSDIVSsgQPNPPFFLQLYVNSERQKTATLLHEAKHLGIKAIFVTVDAPIPGKREADERIA-AVNLQSGISGAVATNDKKGGG---------LGRVMA 267
                 ******9432334************************************************3.344443333333333333333.........346799 PP

                 CHB-TC--HHHHHHHHHHHS.SEEEEEEE-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCHHHHHHHH........SS-EEEESS--SHHHHHH CS
      FMN_dh 197 kqldpsltwddikwlreqtk.lplvvKGvltaedakraveaGvdgivvSNHGGRqldgapatidvLpeiveavgg......rievlvDgGirrGsDvlk 288
                 k++d++l+w+di+wl+++++ +p+++KG++ta+da +a+e+Gv+gi++SNHGGR+ld+++a++ +L e+ + +++       +e+++DgG++ G+D+lk
  KKY24101.1 268 KYIDSTLNWEDIAWLKKECDgMPIILKGIQTAADAIKALEYGVQGILLSNHGGRSLDTTQASLLTLLELHALCPQiftqtpPFEIYLDGGFTCGTDILK 366
                 ******************9956********************************************9999999866666768***************** PP

                 HHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHCGGEE CS
      FMN_dh 289 AlalGAdavllGRpflyglaagGeeGvervleilraelertmallGvksvaeldrslls 347
                 Al+lGA+a+++GRp+ly la +G eGv++++eil++el ++++l G+++++++++++++
  KKY24101.1 367 ALCLGATAIGIGRPYLYSLA-YGCEGVKHLTEILKDELVSSLKLSGITDLNQVHPEMVN 424
                 ******************98.7***********************************97 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.7e-07   0.00043     276     313 ..     351     390 ..     347     395 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.7e-07
                   EEEEESS--SHHHHHHHHHHT-SEEE-SHHHH..HHTT-- CS
  Glu_synthase 276 sliadGglktgadvvkalalGAdavgigtaal..ialgCi 313
                   ++  dGg+ +g+d++kal lGA a+gig+  l  +a gC 
    KKY24101.1 351 EIYLDGGFTCGTDILKALCLGATAIGIGRPYLysLAYGCE 390
                   5789*************************99933456886 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.2e-06     0.013     133     237 ..     276     379 ..     267     386 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.2e-06
                 HHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-.SS-STTBHHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 133 leavkeikkkveeveviaGnvataegakaLieagadavkvG.iGpGsiCttrvvagvGvpqltAvaevaeaakkagvpviaDGGikysgdivkAlaaGa 230
                  e ++++kk+++ + +i   + ta+ a + +e g++++     G  s+ tt+  + +   +l A++    ++++   ++  DGG +   di kAl++Ga
  KKY24101.1 276 WEDIAWLKKECDGMPIILKGIQTAADAIKALEYGVQGILLSnHGGRSLDTTQA-SLLTLLELHALCPQI-FTQTPPFEIYLDGGFTCGTDILKALCLGA 372
                 67789999999889999999999999999999999999886246667777775.456677788875433.34444688999****************** PP

                 SEEEESC CS
                 xxxxxxx RF
       IMPDH 231 davmlGs 237
                  a+ +G+
  KKY24101.1 373 TAIGIGR 379
                 ***9996 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.9e-05       0.1     165     204 ..     277     316 ..     271     328 .. 0.83
   2 ?   -3.4   0.0       1.8   4.6e+03     178     201 ..     352     375 ..     342     377 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHH-.SS-BEEES---SHHHHHHHHHTT-SEEEES CS
        ThiG 165 ealkiiieea.kvPvivDAGigspsdaaqamelGadavlln 204
                 e +  + +e+  +P+i+  Gi ++ da++a+e+G++++ll 
  KKY24101.1 277 EDIAWLKKECdGMPIIL-KGIQTAADAIKALEYGVQGILLS 316
                 56777778886789998.5********************96 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.8
                 BEEES---SHHHHHHHHHTT-SEE CS
        ThiG 178 vivDAGigspsdaaqamelGadav 201
                 + +D G    +d+ +a+ lGa+a+
  KKY24101.1 352 IYLDGGFTCGTDILKALCLGATAI 375
                 67899999999*********9997 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00012       0.3      38      73 ..       3      38 ..       2      39 .. 0.92
   2 ?   -2.5   0.0       2.2   5.8e+03      41      54 ..     130     143 ..     127     152 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
                HHHTTTTSBBHHHHHHTTGGCHHHHHHHHG.GEEEEE CS
      Cyt-b5 38 ailkyaGkDateafksvvhsekdaekllkk.ylvGkl 73
                +ilkyaG Dat+a   + h + ++ek l k  ++G +
  KKY24101.1  3 VILKYAGADATAAYDEI-HAPGILEKGLSKdNYIGHI 38
                699**************.9999999999999999976 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.2
                 TTTTSBBHHHHHHT CS
      Cyt-b5  41 kyaGkDateafksv 54 
                 k  G+D+++ f + 
  KKY24101.1 130 KILGHDCSAPFFVS 143
                 5679****999765 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   8.9e-05      0.23     159     212 ..     263     315 ..     263     319 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.9e-05
                 SSECCCTT-CG--CHHHHHHHHH-S.S-EEEESS--SHHHHHHHHHHH--SEEEE CS
         Dus 159 gRtraqnyegtadweaIkevkqavs.ipviaNGdIkdaedaqaileetGadgvmi 212
                 gR+ a+    t++we+I+ +k++    p+i  G I++a da ++le+ G++g++ 
  KKY24101.1 263 GRVMAKYIDSTLNWEDIAWLKKECDgMPIILKG-IQTAADAIKALEY-GVQGILL 315
                 6777888888*********************99.*************.***9976 PP

>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.16   4.1e+02     213     238 ..     291     316 ..     278     329 .. 0.82
   2 ?    8.5   0.0    0.0004         1     171     225 ..     364     419 ..     360     432 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.16
                 EEESSS-SHHHHHHHCCTT-SEEEES CS
        IGPS 213 vaeSGiktredveklkeegvnafLvG 238
                 + + Gi+t++d+ k  e gv+++L  
  KKY24101.1 291 IILKGIQTAADAIKALEYGVQGILLS 316
                 6678*******************975 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0004
                 HHHHHHTT-SEEEEESEETTTTEE-CHHHHHHCHCC-TT.SEEEEESSS-SHHHHH CS
        IGPS 171 leralklgakiiGvNnRnLktlevdlntteeLaklvpkd.vllvaeSGiktredve 225
                 + +al lga  iG+    L +l    + +++L++ ++++ v    +SGi++ ++v+
  KKY24101.1 364 ILKALCLGATAIGIGRPYLYSLAYGCEGVKHLTEILKDElVSSLKLSGITDLNQVH 419
                 6689*********************************99899999********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 2837.00
//
Query:       KKY24102.1  [L=449]
Description: putative aspartic-type [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-41  142.7   2.4    2.1e-41  142.3   2.4    1.1  1  Asp              Eukaryotic aspartyl protease
    0.00018   22.1   2.1          5    7.8   0.1    3.8  3  Asp_protease_2   Aspartyl protease
     0.0012   19.4   1.4        2.8    8.6   0.1    4.0  4  gag-asp_proteas  gag-polyprotein putative aspartyl protease
     0.0017   18.6   1.1      0.035   14.3   1.1    3.0  1  TAXi_N           Xylanase inhibitor N-terminal
     0.0042   16.9   0.0      0.013   15.2   0.0    1.9  2  TAXi_C           Xylanase inhibitor C-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.3   2.4     6e-45   2.1e-41      12     314 ..      99     443 ..      90     444 .. 0.80

  Alignments for each domain:
  == domain 1  score: 142.3 bits;  conditional E-value: 6e-45
                 TEEEEEEEETT--SEEEEBTT.........EST.SHCHHTSS-B-GGG-TT-EEEEEEEEEECTTS.EEEEEEEEEEEEETTEEEEEEEEEEEEEESSH CS
                 xxxxxxxxxxxxxxxxxxxxx.........xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp  12 eqkftvifDTGSsdlWVpssk.........ckk.ssackshstydpskSstykkngkslsisYGdg.svsGflsqdtvkvggltvknqefgeatkepgs 99 
                 +q+f  i+DTGSsd+W ++            ++ + +c++   y p  S+    + ++++i+Y+dg  ++G+++++tv+++++tv+nqe+g ++ +  +
  KKY24102.1  99 NQSFDAIVDTGSSDTWLVEAGftcvdpetnATItEAECYFGAYYYPD-STVQFITDENFNITYADGeYLNGYMAYETVTLANITVTNQEVGIVNLAGWN 196
                 69******************999999999844436779888777665.555568999*********99************************9988774 PP

                 HHTTSSSSEEEE-S-GGGSCGG..........SCCHHHH..........HHHTTSSSSSEEEEEE-S...TTSSEEEEEESSEEGGG...EEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxx..........xxxxxxx..........xxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx...xxxxxxxxx RF
         Asp 100 tflaakfdGiLGlgfkeisvee..........atpvfdn..........lvsqglikepvfsvylnr...eeeeggeivfGgvDesk...ykGsltyvp 172
                    +   +G++Gl+++++++                  +          ++++  ++ p fs+ l+r   ++ +gg +  Gg+  +    ++  +t +p
  KKY24102.1 197 --GDGISSGLIGLAYPDLTSAYagtnatadsyD-----EaltydpifttMYKR-NLTAPYFSLALSRdesQSGNGGLMAIGGIPCNIpggIQSPFTSTP 287
                 ..666789*********9998877766544440.....455555555537777.5789*********654455678899****8765222566789999 PP

                 ESS..........TSSTEEEEEEEEETTEEE..EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEETTCEEEEETTGGGGSEEEEEEE...TTEE CS
                 xxx..........xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxx RF
         Asp 173 vts..........kgywqielesvtvggktv..lcssgcqailDtGTsllalptsivekiakaigakksesegeyvvdCdslsslpdisfti...ggak 256
                 + +            y++i+  +++++++++   +s +   i+D+GT+l ++pt+ ++ +++ ++  +  +eg+y v+C++  + p++++ i    +a 
  KKY24102.1 288 IETlrtdfrkgsnYYYYTINPYGFSFTTNKTldPTSLNQTFIVDSGTTLNYIPTTSAATFNSLFSPPAFLDEGYYYVSCNA--TAPSFNVYItsnTSAY 384
                 999999***995444477777778877777756677777889**************************************9..6666666664333455 PP

                 EEEEGGGGEEEESSSTTSEEEESE...EECCTSSSEEEEHHHHTTEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 257 itvpvselvlkeeeseesqCilgl...vseeegdlwiLGdvFlrsayvvfdldnnrvglAe 314
                 +  ++ +l+l  +e+  ++C++g+    ++ +g++ iLGdvFl+++  vfd++n+++ +A+
  KKY24102.1 385 YPTNPYDLILDIDEG--DICLSGVqdgGEPGDGNVFILGDVFLKNVLAVFDVGNEEMRFAK 443
                 667777777777764..7******9888999****************************97 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1    0.0014         5       4      23 ..      96     115 ..      92     120 .. 0.85
   2 !    7.6   0.0    0.0017         6      45      88 ..     159     207 ..     148     209 .. 0.82
   3 ?    3.7   0.0     0.028     1e+02      11      30 ..     327     346 ..     322     356 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0014
  Asp_protease_2   4 tinGkpvrfllDTGasttli 23 
                     +++++ +++++DTG+s t +
      KKY24102.1  96 SFGNQSFDAIVDTGSSDTWL 115
                     667899**********9976 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0017
  Asp_protease_2  45 sgaggevkarlvrldslklggltlknvpalvld....lge.eidglLGm 88 
                     + a+ge    ++  ++++l+++t++n+++ +++    +g+  + gl+G+
      KKY24102.1 159 TYADGEYLNGYMAYETVTLANITVTNQEVGIVNlagwNGDgISSGLIGL 207
                     5688888899999********************8888444145688886 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.028
  Asp_protease_2  11 rfllDTGasttlispelaek 30 
                     +f++D+G + ++i+++ a++
      KKY24102.1 327 TFIVDSGTTLNYIPTTSAAT 346
                     79***********9988765 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.91   3.3e+03      18      38 ..      58      78 ..      55      92 .. 0.76
   2 !    8.6   0.1   0.00077       2.8       4      24 ..      96     116 ..      93     132 .. 0.86
   3 ?    3.0   0.0     0.044   1.6e+02      41      80 ..     155     194 ..     147     209 .. 0.71
   4 ?    3.5   0.0      0.03   1.1e+02      10      30 ..     326     346 ..     323     355 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.91
                     -SS-EEEHHHHHHTTGGGGEB CS
  gag-asp_proteas 18 Asstiiseelaerlglsrked 38
                     A+ t++s+   +rl+l++++ 
       KKY24102.1 58 AKGTSVSSGYLNRLRLDKSNH 78
                     788999999999999988874 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00077
                      EETTEEEEEEEETT-SS-EEE CS
  gag-asp_proteas   4 kingkpvkflvDTGAsstiis 24 
                      ++ +++++++vDTG s+t + 
       KKY24102.1  96 SFGNQSFDAIVDTGSSDTWLV 116
                      67789************9875 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.044
                      TT--EE-TTSTT-EEEEEEEEEE.EETTEEEEEEEEEESS CS
  gag-asp_proteas  41 kvevktangeveakrvrldsvkiggielrnvsavvlegel 80 
                      +++++ a+ge   + +  ++v++ +i+++n ++ +++ + 
       KKY24102.1 155 NFNITYADGEYLNGYMAYETVTLANITVTNQEVGIVNLAG 194
                      6778888998888888899999999999999888887654 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.03
                      EEEEEETT-SS-EEEHHHHHH CS
  gag-asp_proteas  10 vkflvDTGAsstiiseelaer 30 
                      ++f+vD+G +   i+++ a +
       KKY24102.1 326 QTFIVDSGTTLNYIPTTSAAT 346
                      68*************999876 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   1.1   9.8e-06     0.035       5     142 ..      95     211 ..      91     270 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9.8e-06
      TAXi_N   5 isiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavpcssslCkaceasssaksgsssstceyeisygadgssssGvlatdtltl 103
                 is G+  q++ ++vDtGs+ tW+     +          dp++  t ++ +c   +        + +  +  +  +++i+y+ dg + +G +a +t+tl
  KKY24102.1  95 ISFGN--QSFDAIVDTGSSDTWLVEAGFT--------CVDPETNATITEAECYFGAYY-----YPDSTVQFITDENFNITYA-DGEYLNGYMAYETVTL 177
                 56665..699************7652222........366777777777777665555.....455566667788999***6.999************* PP

      TAXi_N 104 sstdgksvkvpnlvfGCgksnlgglaagadGilGLGrgk 142
                       +++v+n  +G ++    +    ++G++GL++ +
  KKY24102.1 178 -----ANITVTNQEVGIVNLAGWNGDGISSGLIGLAYPD 211
                 .....7889999999998832233333478999999866 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.2   4.3e+03      29      53 ..     100     124 ..      78     137 .. 0.66
   2 !   15.2   0.0   3.7e-06     0.013     107     160 ..     387     442 ..     363     443 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.2
                 ---SEEE-SSSSSEEE-HHHHHHHH CS
      TAXi_C  29 gsggtvlstgtpytvletdvYralv 53 
                 +s  ++++tg++ t l+++ ++ + 
  KKY24102.1 100 QSFDAIVDTGSSDTWLVEAGFTCVD 124
                 4556778888888877777776555 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 3.7e-06
                 E-GGGGEEE-SSSEEEE-EEE-..-S--SSSEEE-HHHHBTS-EEEETTTTEEEEE CS
      TAXi_C 107 isgenllvkveggvvClafves..gvagesavviGglqlednllvFDleksrlgFs 160
                  ++ +l++++++g +Cl  v+   +  + + +++G + l+++l vFD+ +++++F+
  KKY24102.1 387 TNPYDLILDIDEGDICLSGVQDggEPGDGNVFILGDVFLKNVLAVFDVGNEEMRFA 442
                 55667889999999**976666555566677899*********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 2758.42
//
Query:       KKY24103.1  [L=129]
Description: putative vacuolar atp synthase subunit f [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-28   99.1   0.0    1.7e-28   98.8   0.0    1.1  1  ATP-synt_F  ATP synthase (F/14-kDa) subunit


Domain annotation for each model (and alignments):
>> ATP-synt_F  ATP synthase (F/14-kDa) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.0   9.3e-33   1.7e-28       2      80 ..      15     107 ..      14     114 .. 0.96

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 9.3e-33
                 EEEESHHHHHHHHHTTCEEEE..............CSSHHHHHHHHHHHHH.HTTEEEEEEEHHHHCCCHHHHHHCTCSSSSEEEEESCSCCGG CS
  ATP-synt_F   2 avIGdedtvtgfrlaGvgeve..............vtdeeeieealkelle.redigiilitekiaeeirelideykeealPaileIPskegpy 80 
                 avIGded+vtg++laG+g+v+              +t+++eie+a++++++ r+digi+li+++iae+ir  +d+++e a+Pa+leIPsk++p 
  KKY24103.1  15 AVIGDEDSVTGLLLAGIGHVThppdsqrnflvvdsKTETSEIERAFTSFTKeRKDIGIVLINQHIAERIRYSVDSFTE-AFPAVLEIPSKDHPD 107
                 9*************************************************99**************************.************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 933.46
//
Query:       KKY24104.1  [L=167]
Description: putative phosphatidylglycerol phosphatidylinositol transfer protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-27   97.2   0.3    1.2e-27   97.0   0.3    1.1  1  E1_DerP2_DerF2  ML domain
  ------ inclusion threshold ------
      0.048   13.9   0.0      0.092   13.0   0.0    1.5  1  DUF4625         Domain of unknown function (DUF4625)
       0.05   13.3   0.0      0.068   12.8   0.0    1.1  1  PapG_N          PapG carbohydrate binding domain
       0.15   11.9   0.1        2.6    7.8   0.0    2.0  2  DUF4832         Domain of unknown function (DUF4832)


Domain annotation for each model (and alignments):
>> E1_DerP2_DerF2  ML domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   0.3   2.6e-31   1.2e-27       2     131 ..      42     164 ..      41     167 .] 0.95

  Alignments for each domain:
  == domain 1  score: 97.0 bits;  conditional E-value: 2.6e-31
                     -EEEESSTTTSSEEEEEEEEEESSECEECTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEE-BSSEETCHHHHHHTTTT-SSSB-TCEEEEE CS
  E1_DerP2_DerF2   2 vsfedCgankddavtvksveisppcplkrgqnltisadgstsdeissglkaevevkvggwikvpfelpetddaCkvlelgegleCPikageyvty 96 
                     +++ +C++++d ++ ++  +++p+ p+k+g++ltisa+g+ s+++++g+k+ ++vk+g +i+++ +   + d+C+++  +  leCP+k+g   t+
      KKY24104.1  42 NPLTYCADPSDYILSIDYADLDPN-PPKAGETLTISASGTFSKDVEEGTKVLLQVKYG-LITLIKQ---EADLCEQI-GNVDLECPLKKGPM-TL 129
                     5789**99**************99.********************************9.7******...88****99.68899*********.** PP

                     EEEEES-CCCHSCEEEEEEEEEECTTEEEEEEEEE CS
  E1_DerP2_DerF2  97 tlslplpselpngkyrvelelldedgkeltCvkid 131
                     t+++++p+e+p+gky+v +++++e+g+++tC+++ 
      KKY24104.1 130 TKEVQIPKEVPKGKYTVMADVYTESGEKVTCLNAI 164
                     ********************************975 PP

>> DUF4625  Domain of unknown function (DUF4625)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.1e-05     0.092      91     122 ..     126     157 ..     109     165 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.1e-05
     DUF4625  91 eyelheeieiPadaeaGdYhlvirvtDasGne 122
                   +l++e++iP+++++G+Y ++  v  +sG +
  KKY24104.1 126 PMTLTKEVQIPKEVPKGKYTVMADVYTESGEK 157
                 567899*******************9999976 PP

>> PapG_N  PapG carbohydrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.5e-05     0.068     102     173 ..      75     148 ..      71     157 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.5e-05
      PapG_N 102 vqskggwseenegdkdsyyllkGyewdertndgarvcakvGekk...qlaekfddlvlkvllpvdlpkGeyevpi 173
                 + + g++s++ e +  +  l+  y   + +++ a +c ++G+      l++    l+ +v++p ++pkG+y+v  
  KKY24104.1  75 ISASGTFSKDVE-EGTKVLLQVKYGLITLIKQEADLCEQIGNVDlecPLKKGPMTLTKEVQIPKEVPKGKYTVMA 148
                 667788898888.5556677788999999*************86322477777788999************9965 PP

>> DUF4832  Domain of unknown function (DUF4832)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.031   1.4e+02     161     198 ..      60      96 ..      46     108 .. 0.82
   2 ?    7.8   0.0   0.00058       2.6     174     199 ..     127     152 ..      99     164 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.031
     DUF4832 161 ldadprkwlpgttttitiklklpselakGkykvyLnlp 198
                 +d dp+  + g+t ti+++ ++ +++++G  kv+L+++
  KKY24104.1  60 ADLDPNPPKAGETLTISASGTFSKDVEEG-TKVLLQVK 96 
                 566777778899999*99***********.67888776 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00058
     DUF4832 174 ttitiklklpselakGkykvyLnlpd 199
                  t+t ++++p+e++kGky+v+ ++  
  KKY24104.1 127 MTLTKEVQIPKEVPKGKYTVMADVYT 152
                 446667**************977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1208.32
//
Query:       KKY24105.1  [L=649]
Description: putative methylenetetrahydrofolate reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-117  391.9   0.0   2.4e-117  391.3   0.0    1.2  1  MTHFR     Methylenetetrahydrofolate reductase


Domain annotation for each model (and alignments):
>> MTHFR  Methylenetetrahydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  391.3   0.0  1.3e-121  2.4e-117       3     286 ..      22     305 ..      20     306 .. 0.98

  Alignments for each domain:
  == domain 1  score: 391.3 bits;  conditional E-value: 1.3e-121
                 HHHHT.SS-EEEEEE---SSHHHHHHHHHHHHHHGGGG-SEEEE---CCCTTHHHHHHHHHHHHHHH-S-EEEEEESTTS-HHHHHHHHHHHHHCT--E CS
       MTHFR   3 eqaleegkalisfEffpPkteegernLleridrleevkplfvdvTwgaggstaeltssiakviqqelgleailhlTctdaskeeldkalekakelGirn 101
                  +a ++gk+ +sfEffpPkt++g++nL++r+dr++ ++p f+d+Twgagg +++lts++++v+q++ gle+++hlTctd++ke++d+al++a+++G+ n
  KKY24105.1  22 ADARAKGKPSFSFEFFPPKTAQGVQNLYDRMDRMHDLGPAFIDITWGAGGRHSQLTSEMVSVAQSQYGLETCMHLTCTDMKKEKVDEALQRAYKAGCTN 120
                 566679********************************************************************************************* PP

                 EEEE--S--TT-GGC---S----SHHHHHHHHHHHHCGGSEEEEEE-TT--TT-S-HHHHHHHHHHHHHCT--EEEEEE-S-HHHHHHHHHHHHHCT-S CS
       MTHFR 102 ilALrGDppkdedkweekeeefkyaldLvrlireeygdlfdigvaaYPevhpeaksleadlkylkeKvdaGAdfiitQlffdvdkflkfveqvreagid 200
                 ilALrGDpp++++kwe++e++f+ya+dLv++i+e+ygd+fdigva+YPe+   +++ +  +++lkeKvdaG+ fiitQ+f+dvd fl +v+++reagi+
  KKY24105.1 121 ILALRGDPPRESEKWEATEGGFRYAKDLVKHIKENYGDHFDIGVAGYPEGCDDQDDQNLLMQHLKEKVDAGGTFIITQMFYDVDIFLAWVKRCREAGIT 219
                 *************************************************************************************************** PP

                 S-EEEEE---SSHHHHHHHHHHHT----HHHHCCCTCHCT-HHHHHHHHHHHHHHHHHHHHHCT--EEEEE-TT--HHHHHHHHHC CS
       MTHFR 201 ipiipgimpiksykslkrlaklskvkiPqelldrleeikdddeavkkigielavemvkkllaegvkglHlytlnkekaileileql 286
                 +piipgimpi++ +s++r+a+++k+++P++ +++le++k+dd+av++ig  l+ em++k+l+ g ++lH+yt+n+++a++++le+l
  KKY24105.1 220 VPIIPGIMPIQTHASFERRANWTKCRVPEQWKAALEPVKNDDAAVRDIGKGLVAEMCRKILEAGLNHLHFYTMNLAQATRMVLEEL 305
                 ***********************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 3922.72
//
Query:       KKY24106.1  [L=235]
Description: putative orotate phosphoribosyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.1e-13   48.4   0.1      1e-12   47.8   0.1    1.3  1  Pribosyltran  Phosphoribosyl transferase domain
  ------ inclusion threshold ------
       0.12   12.3   0.1       0.17   11.7   0.1    1.3  1  CPT           Chloramphenicol phosphotransferase-like protein


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.1   1.2e-16     1e-12      30     137 ..      74     182 ..      46     197 .. 0.91

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 1.2e-16
                   GEEEEEEETTTHHHHHHHHHHS..........TT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BS CS
  Pribosyltran  30 pdvvvgiargGvpfakiladeL..........evplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgTllaalelLkekgpe 116
                    dv++g+a++G+p+   +  eL           v + + rk+ ++++ +++++            ++g+ +li+DD++++G+++++a+e++ +++  
    KKY24106.1  74 FDVLFGPAYKGIPLCASTMTELahtdkdhkmdRVSYSFNRKEAKDHGEGGTIV---------GCPLKGRNCLIIDDVITSGKAMREAVEIIQAQEGI 161
                   58*************************99999999999999999999999995.........5679******************************* PP

                   EEEEEEEEE-HHHHHHHHHH- CS
  Pribosyltran 117 evriavlvdkpateeevdkna 137
                   +v+++ l+d+ ++  e++   
    KKY24106.1 162 VVGVVLLLDRQERLSEEEERS 182
                   ***********9999887655 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   1.9e-05      0.17      78     130 ..     127     179 ..      92     198 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.9e-05
                 HHHHTT-E.EEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHH CS
         CPT  78 amaraGnn.vivDdvilekewlvdllrrllsgldvllVGvrcplevlerReler 130
                 +   +G n +i+Ddvi++++++ +++ +++++ + ++VGv   l+  er   e 
  KKY24106.1 127 GCPLKGRNcLIIDDVITSGKAMREAV-EIIQAQEGIVVGVVLLLDRQERLSEEE 179
                 55556655489**********99999.*************88777655544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.32s 00:00:00.87 Elapsed: 00:00:00.52
# Mc/sec: 1355.57
//
Query:       KKY24107.1  [L=1049]
Description: putative nucleolar gtp-binding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-56  187.9   0.1    8.5e-56  187.1   0.1    1.4  1  Asp_protease     Aspartyl protease
    1.1e-49  168.5   0.1    1.1e-49  168.5   0.1    2.5  2  NOG1_N           NOG1 N-terminal helical domain
    1.3e-27   95.5   2.4    3.4e-27   94.2   2.4    1.8  1  NOGCT            NOGCT (NUC087) domain
    6.8e-26   89.8   0.3    1.6e-25   88.7   0.3    1.7  1  NOG1             Nucleolar GTP-binding protein 1 (NOG1)
    2.6e-22   79.2   0.0    6.9e-22   77.8   0.0    1.8  1  gag-asp_proteas  gag-polyprotein putative aspartyl protease
    1.3e-15   57.4   0.0    3.3e-15   56.2   0.0    1.7  1  MMR_HSR1         50S ribosome-binding GTPase
    5.3e-12   46.2   0.1    1.3e-11   45.0   0.1    1.7  1  Asp_protease_2   Aspartyl protease
    1.1e-08   34.7   0.0    2.2e-08   33.8   0.0    1.5  1  FeoB_N           Ferrous iron transport protein B
    1.5e-05   24.6   0.0    3.4e-05   23.5   0.0    1.6  1  ubiquitin        Ubiquitin family
    9.1e-05   22.2   0.0    0.00019   21.2   0.0    1.4  1  RVP_2            Retroviral aspartyl protease
     0.0012   18.7   0.7       0.55   10.1   0.0    3.6  4  RsgA_GTPase      RsgA GTPase
     0.0025   17.2   0.0     0.0061   15.9   0.0    1.6  1  Gtr1_RagA        Gtr1/RagA G protein conserved region
     0.0076   16.5   0.0      0.019   15.2   0.0    1.7  1  RVP              Retroviral aspartyl protease
     0.0086   16.2   0.1        6.2    6.9   0.0    2.9  2  Dynamin_N        Dynamin family
  ------ inclusion threshold ------
      0.015   15.2   0.0      0.041   13.8   0.0    1.7  1  UBA              UBA/TS-N domain
       0.14   12.5   8.9       0.78   10.1   0.0    4.2  5  AAA_16           AAA ATPase domain
       0.26   11.0   1.5         16    5.3   0.0    3.6  3  S4               S4 domain
        0.7    8.4   4.1        1.2    7.6   4.1    1.3  1  RRN3             RNA polymerase I specific transcription init
          2    8.8   5.8        1.2    9.5   0.2    3.0  2  SbcD_C           Type 5 capsule protein repressor C-terminal 
        6.3    7.2   0.0        6.3    7.2   0.0    3.8  4  AAA_23           AAA domain
        8.2    7.0  18.5       0.17   12.4   0.5    3.1  2  APG6_N           Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> Asp_protease  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.1   0.1     1e-58   8.5e-56       2     123 ..     157     278 ..     156     279 .. 0.99

  Alignments for each domain:
  == domain 1  score: 187.1 bits;  conditional E-value: 1e-58
  Asp_protease   2 eaveenlekalehtPeafvkvtmlyinvevngvkvkafvdsGaqksilskkcaercglmrlldtrfkgiakGvGtkkilGrvhsaevklgdlflpva 98 
                   e+v++n+++aleh+Pe+f++vtmlyi+v+vngv+vkafvdsGaq++i+s++caer ++mrl+d+r++giakGvGt+ ilGrvhsae+++g+  lp +
    KKY24107.1 157 ERVQDNIQEALEHNPEMFGRVTMLYIPVTVNGVPVKAFVDSGAQATIMSPSCAERTNIMRLIDRRYAGIAKGVGTAAILGRVHSAEIQIGKFSLPSS 253
                   799********************************************************************************************** PP

  Asp_protease  99 lsvledkevdlllGldllkrhqvii 123
                   ++v+e+k+vdlllGld+lkrhq+ i
    KKY24107.1 254 FTVMEGKDVDLLLGLDMLKRHQMDI 278
                   **********************987 PP

>> NOG1_N  NOG1 N-terminal helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       6.4   5.5e+03      93     122 ..     104     133 ..      94     168 .. 0.65
   2 !  168.5   0.1   1.3e-52   1.1e-49       2     160 .]     403     561 ..     402     561 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 6.4
      NOG1_N  93 qvkwarklirkigkeyvnklkkaddkkeak 122
                 +    ++   ++ +e+++kl++a+  kea+
  KKY24107.1 104 DAADNKERFHELFNEHQRKLAQAQAEKEAR 133
                 555555555566666666666666555443 PP

  == domain 2  score: 168.5 bits;  conditional E-value: 1.3e-52
      NOG1_N   2 ekiptvptseelidkalrrakraakttkkkkneikrlrnlearkvrtasntlsdkLeeivkkfPnldelhpFyrelldvlvdkdelkksLaqvkwarkl 100
                 ++i+ vpts+e+id  l+r++r  +t  +++ +i+r+r +++rkv+++++t+++k+++i++ fP+l+++hpF+++ll++l+d d+++++L+qv++a++l
  KKY24107.1 403 KEIQPVPTSQEFIDIVLSRTQRRLPTQIRSGFKISRIRGFYTRKVKFTAETFAEKFQSILDGFPRLQDIHPFHKDLLNTLYDADHFRIALGQVSTAKRL 501
                 789************************************************************************************************ PP

      NOG1_N 101 irkigkeyvnklkkaddkkeakelrreafgrvasvlkkvdkaldfLedvrkkLrkLpaiD 160
                 i++++++yv++lk+a+++ ++k+l+r+a+gr+a++ k+ ++ l +Le+vr++L +Lp+iD
  KKY24107.1 502 IETVSRDYVRLLKYAQSLFQCKQLKRAALGRMATICKRLKDPLVYLEQVRQHLGRLPSID 561
                 ***********************************************************9 PP

>> NOGCT  NOGCT (NUC087) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   2.4     4e-30   3.4e-27       1      54 []     800     853 ..     800     853 .. 0.99

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 4e-30
       NOGCT   1 rklerdleeenggagvYsvdlkkkYllkndewkyDiiPEildGkNvaDFidpdI 54 
                 rkl+rd+eeenggagv++vdlk++Y+l+++ewk+D++PE+++GkNv+DFidp+I
  KKY24107.1 800 RKLARDIEEENGGAGVFNVDLKEDYDLADPEWKHDKVPEVFNGKNVYDFIDPEI 853
                 89***************************************************9 PP

>> NOG1  Nucleolar GTP-binding protein 1 (NOG1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.3   1.8e-28   1.6e-25       1      58 []     631     688 ..     631     688 .. 0.99

  Alignments for each domain:
  == domain 1  score: 88.7 bits;  conditional E-value: 1.8e-28
        NOG1   1 eIEkqAiaALkhladavlFllDpseecgysleeQlsLleeikelfankpvivvlnKiD 58 
                 +IE+q+i+A++hl++a+l+++D+se+cgy+++ Q++L+++i++lfank v++v+nKiD
  KKY24107.1 631 TIEMQSITAIAHLRSAILYFMDLSEQCGYTVQAQIQLFRSIRPLFANKLVFIVINKID 688
                 6********************************************************9 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0   8.1e-25   6.9e-22       1      92 []     182     273 ..     182     273 .. 0.91

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 8.1e-25
                      EEEEETTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTST.T-EEEEEEEEEE.EETTEEEEEEEEEESSSSEEEEHHHHHH CS
  gag-asp_proteas   1 vkvkingkpvkflvDTGAsstiiseelaerlglsrkedkgkvevktangev.eakrvrldsvkiggielrnvsavvlegelddlLLGldfLkr 92 
                      ++v++ng pvk++vD+GA+ ti+s+++aer++++r++d++ + ++++ g++   +rv+ ++++ig+++l   s++v+eg+  dlLLGld+Lkr
       KKY24107.1 182 IPVTVNGVPVKAFVDSGAQATIMSPSCAERTNIMRLIDRRYAGIAKGVGTAaILGRVHSAEIQIGKFSLP-SSFTVMEGKDVDLLLGLDMLKR 273
                      689**********************************987777777777664568**************9.7*******************98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   3.8e-18   3.3e-15       3     114 .]     568     686 ..     566     686 .. 0.72

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 3.8e-18
                 EEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSS....HHHHHHHHHHHHHHHHCTSEEEEEEETTTT.CSHHHHHH CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGlie....gaseekglgkaflaleeadlillvvdasee.klkpldee 96 
                 +i G+pNvGKS++++++t++ + v+ +++tT+    g++++k  +++ +DtpG+++    + ++ ++ + +  a+ + ++il+ +d+se+ +++ +  +
  KKY24107.1 568 LICGYPNVGKSSFLKSITRADVDVQPYAFTTKSLFVGHFDYKYLRFQAIDTPGILDhpleEMNTIEMQSITAIAHLR-SAILYFMDLSEQcGYTVQ-AQ 664
                 799*************************************999**********874232122222233333333555.89******9933445333.44 PP

                 HHHHHHH.....TTSEEEEEEES CS
    MMR_HSR1  97 leellee.....akkplilvlnk 114
                 ++ ++ +     a+k +++v+nk
  KKY24107.1 665 IQLFR-SirplfANKLVFIVINK 686
                 43332.22456777778888887 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.1   1.5e-14   1.3e-11       1      89 [.     182     269 ..     182     270 .. 0.89

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 1.5e-14
  Asp_protease_2   1 vpvtinGkpvrfllDTGasttlispelaeklgl.kvreseltvrvsgaggevkarlvrldslklggltlknvpalvldlgeeidglLGmd 89 
                     +pvt+nG+pv++++D+Ga++t++sp+ ae+ ++ +  + ++   ++g+g +    +v+  ++++g+++l+   ++v++ g+ +d+lLG+d
      KKY24107.1 182 IPVTVNGVPVKAFVDSGAQATIMSPSCAERTNImRLIDRRYAGIAKGVGTAAILGRVHSAEIQIGKFSLP-SSFTVME-GKDVDLLLGLD 269
                     79****************************9884666666778888888888889999999********7.69*****.99*******98 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   2.6e-11   2.2e-08       3     155 ..     567     731 ..     565     732 .. 0.76

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 2.6e-11
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----..SSSSSSSHHHHHHHHHHHCTSSSEEEEEEE.....GGGHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGi..Yslsayseeekvardflleeepdvvvnvvd.....atnlern 94 
                 + ++G pnvGk++++ ++t a+ +v  ++ +t     g++++k  +++ +D PGi  + l+++++ e  + + +++ +  +++  +d       +++ +
  KKY24107.1 567 LLICGYPNVGKSSFLKSITRADVDVQPYAFTTKSLFVGHFDYKYLRFQAIDTPGIldHPLEEMNTIEMQSITAIAHLR-SAILYFMDlseqcGYTVQAQ 664
                 6789***************************************************44557777666666666665444.55666666211222346667 PP

                 HHHHHHHHHT..TSSEEEEEETHHHHHHTTEEE-HHH....HHHHHTS-EEEEBTTTTBTHHHHHHH CS
      FeoB_N  95 LyLtlqllel..gvpvvlalnmideaekkgieidlkk....LsekLgvpvvktsakkkegieellka 155
                 ++L+  +  l  ++ v +++n+id+++ + ++ d+++    L+++ +v+v+++s  ++eg++++++a
  KKY24107.1 665 IQLFRSIRPLfaNKLVFIVINKIDVMRPEDLHPDTQQeleaLTNENNVEVLQLSCITTEGVSNVKNA 731
                 777666655422677889*********99998887542222777889***************99876 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0     4e-08   3.4e-05      20      70 ..       2      53 ..       1      55 [. 0.93

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 4e-08
                BHHHHHHHHHHHHTSSGGGEEEEETTEEE.-TTSBHGGHTTSTTEEEEEEES CS
   ubiquitin 20 tveelKekiaekegipaeqqrLiysGkvL.edertleeygiqdgstlhlvlr 70
                t++++K+ i+  ++ip + q ++ +Gk+L + ++tle + +++g+ l l++r
  KKY24107.1  2 TLDDVKALIEGDTNIPSNAQHFFVNGKILnDSKQTLERLEVREGDMLGLAVR 53
                7899*************************77789***********9999887 PP

>> RVP_2  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.2e-07   0.00019      26     125 ..     184     282 ..     169     291 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.2e-07
       RVP_2  26 flvnsipatvLfdsGasHsFiskafvsklklkveaLstpllietPvgssvtakeicksveieiqgiefladlilLdlkdlDviLgmdWLsknkanidca 124
                 + vn++p +   dsGa    +s +++++ ++     +    i   vg   ++ ++ +s ei+i + ++++   +++ kd+D++Lg+d L +++  i   
  KKY24107.1 184 VTVNGVPVKAFVDSGAQATIMSPSCAERTNIMRLIDRRYAGIAKGVGTAAILGRV-HSAEIQIGKFSLPSSFTVMEGKDVDLLLGLDMLKRHQMDISLR 281
                 679***************************9988888888999999988886665.899*********************************9998776 PP

       RVP_2 125 e 125
                 e
  KKY24107.1 282 E 282
                 5 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.038        33      99     122 ..     564     587 ..     527     623 .. 0.83
   2 !   10.1   0.0   0.00064      0.55      49      97 ..     680     732 ..     666     737 .. 0.88
   3 ?   -2.5   0.1         5   4.3e+03      55      97 ..     890     933 ..     889     935 .. 0.65
   4 ?   -1.5   0.0       2.4   2.1e+03      80     114 ..    1015    1047 ..     999    1047 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.038
                  TSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpe 122
                   +t +++G   vGKS+++++++  
   KKY24107.1 564 TRTLLICGYPNVGKSSFLKSITRA 587
                  48999**************99875 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00064
                  EEEEEE-GGG--HHH....HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHC CS
  RsgA_GTPase  49 pvivlnKiDlleeee....eleelkeelealgyevllvsaktkegleelkell 97 
                  + iv+nKiD++  e+    + +el++ +++ ++evl +s  t+eg++++k++ 
   KKY24107.1 680 VFIVINKIDVMRPEDlhpdTQQELEALTNENNVEVLQLSCITTEGVSNVKNAA 732
                  68************99998888899999999***************9999865 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 5
                  -GGG--HHHHHHHHHHHHHH.TTSEEEE--TTTHTTHHHHHHHC CS
  RsgA_GTPase  55 KiDlleeeeeleelkeelea.lgyevllvsaktkegleelkell 97 
                  K+Dl+ e+++l +  ++l++ l  + l+ +++++++l++l+++l
   KKY24107.1 890 KADLIREKQALMRNDQKLRKtLHNRALIPRKSQTKTLSQLSAHL 933
                  89999999966666666555145555666666667777777766 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 2.4
                   EE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHH CS
  RsgA_GTPase   80 llvsaktkegleelkellkdktsvlvGqSGvGKSt 114 
                   +   a+++e+ +++++++ ++  +++G+ G+GK++
   KKY24107.1 1015 MNRMARQGEADRHIAAAMPKH--LVAGKRGMGKTS 1047
                   444555666666677666664..579*******97 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.2e-06    0.0061       2     154 ..     567     719 ..     566     730 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.2e-06
   Gtr1_RagA   2 vLLmGksgsGKtsmrsiiFdn.ylardtlrlgatidveksevrflgnltlnlwDcgGqea.fveeylssqkeeifrnvg....vliyVfDvesreleed 94 
                 +L++G  + GK+s  + i    +  +   +  +t ++   ++  ++ l ++ +D +G  +  +ee+ + + ++i   ++    +++y +D + +++  +
  KKY24107.1 567 LLICGYPNVGKSSFLKSITRAdVDVQPYAF--TTKSLFVGHF-DYKYLRFQAIDTPGILDhPLEEMNTIEMQSIT-AIAhlrsAILYFMDLS-EQCGYT 660
                 788999999999976666543033333333..4455555566.468999********865155554333333332.22223349*******9.778888 PP

   Gtr1_RagA  95 letlkeilealrqyspeakvfvlihKmDliq.edereeifeerkeeireeieklekeeiqf 154
                 ++   ++++ +r    +  vf+ i+K+D ++ ed + ++++e ++ ++e+  ++   ++++
  KKY24107.1 661 VQAQIQLFRSIRPLFANKLVFIVINKIDVMRpEDLHPDTQQELEALTNENNVEVL--QLSC 719
                 9999999999********************8667777777777766665554443..4444 PP

>> RVP  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.3e-05     0.019       8     100 ..     183     278 ..     179     279 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.3e-05
                 EEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEE..EEEETTEEEEE..EEEESTTSSSE.EE-HHHHCCCT-EE CS
         RVP   8 kvkiggkyieallDtGAdatviseedwPenwpvkkaetllqGiggatevqqskai..evllieekfrgevsplilpalpvn.ilGrdlLqqlgvrL 100
                  v ++g +++a +D+GA+at++s +    +   +  +    Gi ++  ++ +  +    +++  kf+ + s+ ++ +  v+ +lG d+L+  ++ +
  KKY24107.1 183 PVTVNGVPVKAFVDSGAQATIMSPSCAERTNIMRLIDRRYAGIAKGVGTAAILGRvhSAEIQIGKFSLPSSFTVMEGKDVDlLLGLDMLKRHQMDI 278
                 5889999****************9999888677999999999999998887765411456788899999899998888888899*99999888765 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0072       6.2       2      32 ..     568     598 ..     567     605 .. 0.79
   2 ?    5.9   0.0     0.014        12     106     167 ..     616     686 ..     608     687 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0072
                 EEEEBTTTTHHHHHHHHHTS--S---SSS-- CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilprgpnptT 32 
                 +++G  + GKSS+l +++++d+ +     tT
  KKY24107.1 568 LICGYPNVGKSSFLKSITRADVDVQPYAFTT 598
                 6899999************998665555555 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.014
                 EE---B-SSSGTTS.....HHHHHHHSTTEEEEEEEETTS-CCC-..CHHHHHHHHSTTBTT..EEEEEE- CS
   Dynamin_N 106 vDlPGldsvnkrdq.....elvkeyikkadiilavtsanhdlsns..ealflarevdpkgkr..tivvltk 167
                 +D+PG+ + + +++     + ++ +++ +++il+ ++ + ++  +   + +l r+++p   +  +++v++k
  KKY24107.1 616 IDTPGILDHPLEEMntiemQSITAIAHLRSAILYFMDLSEQCGYTvqAQIQLFRSIRPLFANklVFIVINK 686
                 9*******999999778766666666**********99987654411556667888887777666777766 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.8e-05     0.041       4      24 ..     364     384 ..     363     385 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.8e-05
                 HHHHHHHHTTS-HHHHHHHHH CS
         UBA   4 eaiqrLveMGFdreevveALr 24 
                 ea++ + e+GF++ee+++AL+
  KKY24107.1 364 EAVSKITELGFTKEEAIQALS 384
                 6899****************7 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.9      0.25   2.1e+02      70     127 ..      99     167 ..      79     174 .. 0.71
   2 ?   10.1   0.0   0.00092      0.78       9      47 ..     547     587 ..     545     623 .. 0.86
   3 ?   -2.7   0.0         8   6.8e+03      48     107 ..     653     713 ..     639     746 .. 0.58
   4 ?   -2.6   0.3       7.5   6.4e+03      83      83 ..     935     935 ..     856     992 .. 0.56
   5 ?    2.0   0.0      0.28   2.4e+02      28      39 ..    1036    1047 ..    1021    1047 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.25
      AAA_16  70 sa.laqalareellrqlldeaesaeleawrekleeala..........avpelagaea.srllellkrll 127
                 ++ la+a++++e + +l +e++  +l++++++ e++la          a++e++  ++ +r+ + ++++l
  KKY24107.1  99 APeLADAADNKERFHELFNEHQR-KLAQAQAEKEARLAalnadpfnveAQKEIEEMIRmERVQDNIQEAL 167
                 55589999999999999999888.6666666666666657777777666666666666777777777766 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00092
      AAA_16   9 leqLlsalervrsgrp..elvllsGesGvGKsslvrellra 47 
                 leq+++ l+r+ s +p  + +l+ G++ vGKss ++++ ra
  KKY24107.1 547 LEQVRQHLGRLPSIDPntRTLLICGYPNVGKSSFLKSITRA 587
                 689999999888888888*****************999863 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 8
      AAA_16  48 lekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala.....a 107
                 l+++ g++++++ + ++s +p+  +a+ l +  ++++++ +  + +l ++ ++ +eal+     +
  KKY24107.1 653 LSEQCGYTVQAQIQLFRSIRPL--FANKLVF-IVINKIDVMRPE-DLHPDTQQELEALTnennvE 713
                 5566677777777777555555..7777744.777777666444.45555555555555455552 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 7.5
      AAA_16  83 r 83 
                  
  KKY24107.1 935 S 935
                 1 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.28
      AAA_16   28 llsGesGvGKss 39  
                  l+ G +G+GK+s
  KKY24107.1 1036 LVAGKRGMGKTS 1047
                  89*********7 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.019        16      25      43 ..      20      38 ..      19      46 .. 0.89
   2 ?   -0.5   0.3       1.2     1e+03      28      36 ..     184     192 ..     184     193 .. 0.93
   3 ?    1.9   0.0      0.22   1.9e+02      16      31 ..    1001    1016 ..     998    1017 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.019
                TTTEEETTEEE--TT-EE- CS
          S4 25 hGrVlVNGkvvkdpsyrVk 43
                ++++ VNGk+ +d +++++
  KKY24107.1 20 AQHFFVNGKILNDSKQTLE 38
                6899*********999876 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.2
                 EEETTEEE- CS
          S4  28 VlVNGkvvk 36 
                 V+VNG +vk
  KKY24107.1 184 VTVNGVPVK 192
                 99******9 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.22
                  HHHHHHHHHTTTEEET CS
          S4   16 rreArqlIehGrVlVN 31  
                  r++A++l + G+V+ N
  KKY24107.1 1001 RSKAERLAKLGQVKMN 1016
                  9************976 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.1    0.0014       1.2     209     288 ..     849     939 ..     846     967 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0014
        RRN3 209 iDVeiqveledlddeedeeleeeleededdedddedd...........eesdlddlssdee..aeedee.kdeee..........eslkkikelvekLD 283
                 iD ei+ +l +l++ee++ + e + + +d++ +de++           e          ++  +++d++ ++  +          +++k++ +l++ LD
  KKY24107.1 849 IDPEIESKLAELEEEEEKLEAEGFYD-SDESLEDEEEadirmkadlirE----------KQalMRNDQKlRK--TlhnraliprkSQTKTLSQLSAHLD 934
                 899************99988877665.3444344433445544433321..........2211222222222..1223444555578899********* PP

        RRN3 284 ailtl 288
                 +i + 
  KKY24107.1 935 SIGHD 939
                 99665 PP

>> SbcD_C  Type 5 capsule protein repressor C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2    0.0014       1.2      32      64 ..     689     721 ..     686     745 .. 0.73
   2 ?   -0.6   1.3         2   1.7e+03       5      66 ..     857     924 ..     852     938 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0014
      SbcD_C  32 v.tdedplpdlrerlrellegipvevlrlrrtre 64 
                 v + ed  pd +++l++l+ + +vevl+l  + +
  KKY24107.1 689 VmRPEDLHPDTQQELEALTNENNVEVLQL-SCIT 721
                 55678999*********************.4443 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2
      SbcD_C   5 Lrrlkgdleeila........l.eepsekpawlevev.tdedplpdlrerlrellegipvevlrlrrtreka 66 
                 L++l+++ e+++a        + e+++e +   +  + ++++ l    ++lr+ l ++      ++r+ +++
  KKY24107.1 857 LAELEEEEEKLEAegfydsdeSlEDEEEADIRMKADLiREKQALMRNDQKLRKTLHNR----ALIPRKSQTK 924
                 6666666666666888888885567788888888888888888888889999999999....8885555322 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   1.5      0.37   3.2e+02     149     196 ..     106     167 ..      21     170 .. 0.63
   2 ?   -1.8   0.0       4.3   3.7e+03      69      96 ..     409     436 ..     341     525 .. 0.61
   3 ?    7.2   0.0    0.0074       6.3       3      42 ..     546     587 ..     545     600 .. 0.89
   4 ?   -0.2   2.3       1.4   1.2e+03     157     183 ..     852     884 ..     782     936 .. 0.53

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.37
      AAA_23 149 kdkkerleelekeleeledekkllekl............eqekekek..eleeleeeleeil 196
                 +d ker  el +e + + ++++  ++             e +ke e+  + e ++++++e+l
  KKY24107.1 106 ADNKERFHELFNEHQRKLAQAQAEKEArlaalnadpfnvEAQKEIEEmiRMERVQDNIQEAL 167
                 33334444443333333333332222234444555777655556555667777777777765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 4.3
      AAA_23  69 gkvkayveltfenkdgrytrsiererel 96 
                  + ++++++ ++++++r  ++i+  ++ 
  KKY24107.1 409 PTSQEFIDIVLSRTQRRLPTQIRSGFKI 436
                 3333444444444444332222222222 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0074
      AAA_23   3 kienfrsf..rdqeidFskgltlItGpNGaGKTTildAikla 42 
                  +e +r++  r  +id +    lI+G    GK+++l  i+ a
  KKY24107.1 546 YLEQVRQHlgRLPSIDPNTRTLLICGYPNVGKSSFLKSITRA 587
                 57889999855578***********************99865 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 1.4
      AAA_23 157 elekeleeledekkllekl...........eqekekek 183
                 e+e +l ele+e+++le++           e     e+
  KKY24107.1 852 EIESKLAELEEEEEKLEAEgfydsdesledE-----EE 884
                 3333444444444444444444433221110.....11 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.5    0.0002      0.17      79     125 ..      90     136 ..      86     141 .. 0.90
   2 ?    1.2   7.7       0.6   5.1e+02      67     123 ..     854     908 ..     849     932 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0002
      APG6_N  79 eleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaq 125
                 +++ae+++ + el++  +++erf + +ne+q++l++ + e+++  a+
  KKY24107.1  90 RIRAEIRQTAPELADAADNKERFHELFNEHQRKLAQAQAEKEARLAA 136
                 6899***********************************99876555 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.6
      APG6_N  67 leeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsle 123
                 +++L+ele+e+e+leae        e le+eee+ +r   +l +e++ l    ++l 
  KKY24107.1 854 ESKLAELEEEEEKLEAEGFYD--SDESLEDEEEADIRMKADLIREKQALMRNDQKLR 908
                 456666666666666654333..3345666666666666666666666655555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1049 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1140  (0.0635841); expected 358.6 (0.02)
Passed bias filter:                      628  (0.0350271); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.49
# Mc/sec: 6467.74
//
Query:       KKY24108.1  [L=291]
Description: putative gnat family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-12   45.3   0.0    1.6e-11   44.5   0.0    1.6  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    2.5e-11   43.6   0.0    4.4e-11   42.8   0.0    1.4  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    2.8e-09   37.3   0.0    4.4e-09   36.6   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0001   22.4   0.1     0.0014   18.7   0.0    2.1  2  Acetyltransf_9   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.12   12.5   0.0       0.25   11.5   0.0    1.4  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
       0.13   12.2   0.7        0.2   11.6   0.7    1.2  1  Epiglycanin_TR   Tandem-repeating region of mucin, epiglycani


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   5.3e-15   1.6e-11      55     117 .]     198     261 ..     105     261 .. 0.75

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 5.3e-15
                     T...TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTE.SEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  55 d...ekggvayieslaVspeyrgkGlGsaLlealeerareegi.kkivlaveedndaairlYeklGF 117
                     +    +g++++++ +aV pe+rgk +Gs+L++ ++er ++  + ++i l     +   i++Yek+GF
      KKY24108.1 198 EghqDRGRTVAVHTFAVLPEHRGKRVGSMLMQSYIERIKSAKVaDRITL---LAHGELIPFYEKFGF 261
                     1556678999*******************************888***77...444556********9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   1.5e-14   4.4e-11      53     125 ..     208     281 ..     170     283 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 1.5e-14
  Acetyltransf_10  53 hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkav.geeqeenGirfvpMek 125
                       ++ ++V pe+rg+ +g++L++ ++e+++ ++ + ++t+ a+ + +pfYek+GFk++  ++  + G  +++M++
       KKY24108.1 208 AVHTFAVLPEHRGKRVGSMLMQSYIERIKSAKVADRITLLAHGELIPFYEKFGFKNLgPSNARFGGGNWHDMAL 281
                      7899************************9998888**********************55667889999999987 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.5e-12   4.4e-09      27      75 ..     209     262 ..     186     263 .. 0.66

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1.5e-12
                     TEEEEE-GGGTTSSHHHHHHH.H......TTSEEE......EE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7  27 itrlaVdpeyrgkGiGraLle.a......aekgii......le.qlelnaekaikfYeklGFe 75 
                      + +aV+pe+rgk +G+ L++ +      a    +      l  +      + i+fYek+GF+
      KKY24108.1 209 VHTFAVLPEHRGKRVGSMLMQsYieriksA----KvadritLLaHG-----ELIPFYEKFGFK 262
                     3449*****************644432221....122221123333.....4599*******8 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.11   3.4e+02       6      40 ..     101     132 ..      97     141 .. 0.78
   2 !   18.7   0.0   4.7e-07    0.0014      75     126 ..     208     262 ..     200     264 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.11
                     -GGGHHHHHHHHHHHTT----H..HHHHHHHHHHT CS
  Acetyltransf_9   6 teedldevlellkyaFqdeespleeireyfrklle 40 
                      ++ +d+++++ +++F +ee++    re f ++l+
      KKY24108.1 101 SSANVDDCVQVENASFPEEERAS---REKFAYRLQ 132
                     67789***************996...455555555 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 4.7e-07
                     EEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT-..-EEEE--..SSHHHHHTTT-E CS
  Acetyltransf_9  75 gvtgVavapehrgrgvlskLlaraleemreegq..plsllfP..ssipiYrrfGye 126
                     +v   av pehrg+ v s L++  +e++++ ++  +++ll +    ip+Y++fG++
      KKY24108.1 208 AVHTFAVLPEHRGKRVGSMLMQSYIERIKSAKVadRITLL-AhgELIPFYEKFGFK 262
                     566779************************9642145555.445669*******97 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.2e-05      0.25      22      56 ..     203     238 ..     192     244 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.2e-05
  Acetyltransf_CG  22 egvldfthTe.VpeelrGkGiAkkLvkaalddaree 56 
                       g+ +  hT+ V +e+rGk +++ L+++ ++ ++++
       KKY24108.1 203 RGRTVAVHTFaVLPEHRGKRVGSMLMQSYIERIKSA 238
                      4466677776599*****************999876 PP

>> Epiglycanin_TR  Tandem-repeating region of mucin, epiglycanin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.7   6.8e-05       0.2      16      49 ..     166     199 ..     159     201 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.8e-05
  Epiglycanin_TR  16 tntgsSvtSsgtStvtntgsSvTsggtsTatNta 49 
                       t+++vt ++    +n + SvT++   T+t+ +
      KKY24108.1 166 RTTAETVTDAAMALPSNWQESVTASEEQTPTDEG 199
                     4599**************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1063  (0.0592894); expected 358.6 (0.02)
Passed bias filter:                      669  (0.0373138); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 1747.75
//
Query:       KKY24109.1  [L=349]
Description: putative 3-ketoacyl-reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-40  138.7   0.1    1.5e-40  138.7   0.1    1.5  2  adh_short        short chain dehydrogenase
    1.6e-24   86.7   0.0    2.3e-24   86.2   0.0    1.2  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    4.9e-07   29.8   0.0    8.2e-07   29.1   0.0    1.3  1  KR               KR domain
     0.0012   18.1   0.0     0.0016   17.6   0.0    1.1  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
  ------ inclusion threshold ------
      0.046   13.7   0.1        0.1   12.6   0.1    1.6  1  BACON            Putative binding domain, N-terminal


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.7   0.1   4.2e-44   1.5e-40       2     191 ..      68     261 ..      67     264 .. 0.95
   2 ?   -3.2   0.1       1.4   4.9e+03     135     152 ..     277     294 ..     274     308 .. 0.80

  Alignments for each domain:
  == domain 1  score: 138.7 bits;  conditional E-value: 4.2e-44
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S..S--SSGGGC CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi..tgsgpfsel 96 
                 ++l+tGas+GIG+++a ++a++G+++++v+r+ +kl+++a+e+ ++  + ++ ++++D ++ +  + +  +a+ + + + +L+nN+G   + ++pf+e+
  KKY24109.1  68 WALITGASDGIGKEYALQIARQGFNLLLVSRTTSKLHALANEITAAnsAVRVETVAMDFSKNDPQDYTRLTAALRGKDVSILINNVGQshSIPVPFAET 166
                 69******************************************9998999*********8888877777787899************99999****** PP

                 SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHC CS
   adh_short  97 seeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelr 191
                  +ee +++i +N tg++++t++vlp m+++++G I +++S  g  p + +a Ys sKa++++++ +la e+a++g++v+ v+  lv ++m k +r
  KKY24109.1 167 PAEERDAIITINCTGTLKVTQLVLPGMVERKRGLILTMGSFGGVFPTPLLATYSGSKAFLQQWSTALAGEVAQYGVTVHFVHSYLVTSAMSKVRR 261
                 ****************************************************************************************9998765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.4
                 EEGGGTSB-TTBHHHHHH CS
   adh_short 135 sSvagkvpvagvaaYsAs 152
                  S +g+ +  ++ aYs s
  KKY24109.1 277 LSKIGRTGGSQGYAYSGS 294
                 588899999999999988 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.0   6.5e-28   2.3e-24       1     182 [.      73     259 ..      73     275 .. 0.89

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 6.5e-28
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsre 93 
                   Ga  gIG++ A ++a++G +++l+ +  ++ ++ ++e++++ +a  v  +++D ++++  + +  +++ + + + il+nn+g ++++  pf+et+ e
    KKY24109.1  73 GASDGIGKEYALQIARQGFNLLLVSRTTSKlHALANEITAANSAVrVetVAMDFSKNDPQDYTRLTAALRGKDVSILINNVGQSHSIPVPFAETPAE 169
                   899************************99977777777776664445779****9988888887788888889************************ PP

                   HHHHHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGS CS
  adh_short_C2  94 efdraldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgi 182
                   e d ++ +n+++++++++ +lp +++++ g i+++ s+g+   +p  + y+ +Ka l++ + +lA e++++g++v+ v+  ++   +++ +
    KKY24109.1 170 ERDAIITINCTGTLKVTQLVLPgMVERKrGLILTMGSFGGVFPTPLLATYSGSKAFLQQWSTALAGEVAQYGVTVHFVHSYLVTSAMSK-V 259
                   **********************7555557**************************************************9998766644.4 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   2.3e-10   8.2e-07       3     162 ..      69     232 ..      67     248 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 2.3e-10
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HH..HHHHHHHHHHHHSS---EEEE------..---T CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkd..avealleeikaeeppikGvihaAgvlr..dkll 97 
                  litG+  g+G+e a ++a++g  +l+l+sR+ ++ ++ +++i++  ++ ++ve+va+D s++d  + ++l ++++  ++ ++  i+  g ++    ++
  KKY24109.1  69 ALITGASDGIGKEYALQIARQGF-NLLLVSRTTSKLHALANEITAA-NSAVRVETVAMDFSKNDpqDYTRLTAALR--GKDVSILINNVGQSHsiPVPF 163
                 69********************7.7999****66555555555543.34899********9765116667777776..556777777777666226789 PP

                 TT--HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHH CS
          KR  98 eemtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaey 162
                 +e+ ae+ ++++   ++G+  + +l+ +    ++  +++++ S +g++ ++  a+Y+   afl ++ + 
  KKY24109.1 164 AETPAEERDAIITINCTGTLKVTQLVLPgmveRKRGLILTMGSFGGVFPTPLLATYSGSKAFLQQWSTA 232
                 9************************998777678889999**********************9887665 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.4e-07    0.0016       2     115 ..      70     189 ..      69     197 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.4e-07
                      EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE.....E--TT-HHHHHHHTT..T-SEEEE------...HH CS
  Polysacc_synt_2   2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveiv.pvigdvrdkerlekaleelkvdvvfhaAAlKh...VP 91 
                      l+tGa+  iG+e   qi+++   +++l++r+  kl+++++e+++  ++ ++++  +     d +d +rl+ al+  +v ++++     h   VP
       KKY24109.1  70 LITGASDGIGKEYALQIARQGF-NLLLVSRTTSKLHALANEITAANSAVRVETVAMdFSKNDPQDYTRLTAALRGKDVSILINNVGQSHsipVP 162
                      8****************99887.58899*************865555544433322134578999*****************999988887799 PP

                      HHHHSHHH...HHHHHHHHHHHHHHHH CS
  Polysacc_synt_2  92 lveenple...aiktNvlgtenvieaa 115
                       +e+ + e    i+ N +gt +v +  
       KKY24109.1 163 FAETPAEErdaIITINCTGTLKVTQLV 189
                      999866553326788999999998876 PP

>> BACON  Putative binding domain, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   2.8e-05       0.1      19      52 ..     158     187 ..     146     188 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.8e-05
       BACON  19 tltvtvaaNtsgeeRtatitvtagsgegtvtVtQ 52 
                 ++ v  a+++  eeR a it+++   +gt+ VtQ
  KKY24109.1 158 SIPVPFAETP-AEERDAIITINC---TGTLKVTQ 187
                 5555568889.888*********...667***** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2213.91
//
Query:       KKY24110.1  [L=2445]
Description: putative alpha-glucan [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-19   70.6   3.0    5.5e-18   65.6   1.6    2.5  2  Alpha-amylase    Alpha amylase, catalytic domain
    4.1e-14   52.9   0.1    7.3e-14   52.0   0.1    1.3  1  Glyco_transf_5   Starch synthase catalytic domain
    5.1e-06   26.1   0.0    1.1e-05   25.1   0.0    1.4  1  Glycos_transf_1  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.022   14.8   0.0      0.056   13.4   0.0    1.6  1  Glyco_transf_4   Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   1.6   1.2e-21   5.5e-18       1     218 [.     100     349 ..     100     354 .. 0.79
   2 !    3.5   0.0    0.0098        44     304     331 ..     471     498 ..     400     503 .. 0.85

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 1.2e-21
                    --CHHHHCTCCCCCCCT-SCEEE..-B-CE-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCC........... CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwl..sPifkspqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehew........... 83 
                    GD +G+i+ LdYl+++G+++++l  sP+ ++p    gY i d t +d ++Gt e + + i+++h++g++v++D  +  ++d               
     KKY24110.1 100 GDVEGLIDTLDYLQGMGIKGLYLagSPMINQPWGADGYSILDHTLLDFHYGTIETWRHAINEIHNRGMYVLFDNTFATMGDLLGFegylntttpft 195
                    9**********************666*******************************************************998888999999998 PP

                    .......CHCCHHSTTSGGGCCC-E............................ESS-STTC-....TTTTCSCEE.CTTTTCEEESSS-TTS-BB- CS
  Alpha-amylase  84 .......fkeslkkkgepkrdyyiwkegk......................eekeppnnwks....lfdgsawey.dekaqeyylhlflkklpdLn 145
                            k s+++++ +++        +                       +++ + +  s    + d +a+    +++    l +f++ ++ L 
     KKY24110.1 196 liehkvqYKTSRQYHEFDYG--------NtyndtcqyprfwldtgypvgtdVTDKMKGCYDSefdqYGDVEAFGVfPDWQR--QLAKFSSVQDRLR 281
                    86555543333333333333........23334445677788888888777333333333332122444444444533333..3999999999999 PP

                    TTTCCCCCCCCCCCCCCCTTT.-SEEEETTCCCTTTCCCCHCCHCCHHHHHHHHHHHTCCGTT-EEEEE-TT-S CS
  Alpha-amylase 146 teneevrkelkdvvkfwlekg.idGfRlDvvkhvskvealesngeflheftqalnetvasrkevmtvgEvssda 218
                      +  vr +l+  + + +e++ idGfR D + +        + +  l+e+  +  ++  ++++++t gE+ +++
     KKY24110.1 282 EWHAPVRAKLQHFSCMIIETFdIDGFRYDKATQATV-----DAMGDLNEYLRDCARKL-GKNNFFTPGEITGGN 349
                    99999***************99*******9988777.....78999999999999876.999999999998876 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0098
                    HHHHHHHHHCCCTSSSEEEEETTCCCT- CS
  Alpha-amylase 304 ekklklaaillltlrGvpviYyGeEigm 331
                    ek++  + i +l ++G+p  +yGeE+ +
     KKY24110.1 471 EKQMLGLFITTLHMPGIPLLFYGEEQAF 498
                    5666678889999************975 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.1   1.6e-17   7.3e-14       2     213 ..    1170    1374 ..    1169    1378 .. 0.78

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 1.6e-17
  Glyco_transf_5    2 ilfvasEv..apl...aktGGLadvvgaLpkaLaklghdvrvilPrygaikeekkeleevaelskaaedevevev....ekvkvaklkkdgvd 85  
                      +l++++E+    +   +k GGL+ +++ + k L ++  d   ++P  g ++       +vae       ++ v+v    ++v+v  +  ++++
      KKY24110.1 1170 VLIATMEYdiEDWaikIKIGGLGVMAQLMGKNLGHQ--DLIWVVPCVGGVDYPV---DQVAE-------PMSVTVlgnpYEVQVQYHVLRNIT 1250
                      78888888662334469****************886..899******9999865...44444.......333342234688888888889*** PP

  Glyco_transf_5   86 vyfldnpeffdreg..lYgdkgedyednaerfalfsraalelleklgwkpdvihahDWhtalvpallkelykerglfkkiktvftiHNlayqg 176 
                      +++ld+p f ++++  +Y +   d  d a  ++++++ ++ ++++  +  d+ h++D+h +++p++l  +         i+ ++++HN ++qg
      KKY24110.1 1251 YVLLDAPVFRQQTKsePYPP-RMDDLDSAIYYSAWNQCVALAIKR--FPIDLYHINDYHGSVAPLYLLPQT--------IPACLSLHNAEFQG 1332
                      ********99755568**55.7888999*****************..579*****************9977........************** PP

  Glyco_transf_5  177 rfp......kdel.aalglpaedfekldglefygkvnflkagiv 213 
                       +p      ++e+ a ++l++e     + ++f + +n+l+ag  
      KKY24110.1 1333 LWPmrtqkeREEVcAVFNLEPEIA--QRYVQFGEVFNLLHAGAS 1374
                      ***777655444435577775443..455666777787777765 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   2.4e-09   1.1e-05      11     112 ..    1458    1561 ..    1450    1583 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 2.4e-09
                       TTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES......STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEE CS
  Glycos_transf_1   11 knekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaG.....ngeeekelkklaeelelsdnviflgevsredleellknadifv 97  
                        n k +++++vgr + +Kg+dl+ ++f+++ +  npnv+l+ +G      g+  + lk          +v    +      + +++ a  ++
       KKY24110.1 1458 QNPKAELFVFVGRWSMQKGIDLIADVFPSVLES-NPNVQLITVGpvidlYGKF-AALKLDRMMKLYPGRVYSKPQFT-ALPPFIFSGAEFAL 1546
                       578899************************997.**********999863333.33333333333333444433333.467777788***** PP

                       EEESSBSS-HHHHHH CS
  Glycos_transf_1   98 lpsisEgfGivllEA 112 
                       +ps+ E+fG+v++E 
       KKY24110.1 1547 IPSRDEPFGLVAVEF 1561
                       *************95 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.2e-05     0.056      44     118 ..    1267    1340 ..    1228    1349 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.2e-05
  Glyco_transf_4   44 prvplpllkrllrslaflr.rlrrllkrekpDvvHahspaalgaallalrrrlgiplVltvHglyekrllkarlkp 118 
                      p++p+  + +  ++++++   ++ ++kr+ +D+ H+++++  +a l  l     ip  l++H+ + ++l++ r ++
      KKY24110.1 1267 PYPPRMDDLDSAIYYSAWNqCVALAIKRFPIDLYHINDYHGSVAPLYLLP--QTIPACLSLHNAEFQGLWPMRTQK 1340
                      44444444443333333331467789**************9988887777..7************87777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.22u 0.33s 00:00:01.55 Elapsed: 00:00:00.53
# Mc/sec: 13860.85
//
Query:       KKY24111.1  [L=771]
Description: putative 3-isopropylmalate dehydratase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   7.7e-163  542.8   0.0   9.3e-163  542.5   0.0    1.1  1  Aconitase    Aconitase family (aconitate hydratase)
    1.1e-39  135.7   0.0      2e-39  134.9   0.0    1.4  1  Aconitase_C  Aconitase C-terminal domain
     0.0043   15.8   0.0     0.0074   15.0   0.0    1.3  1  DUF521       Protein of unknown function (DUF521)


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  542.5   0.0  1.6e-166  9.3e-163       1     461 []      13     472 ..      13     472 .. 0.96

  Alignments for each domain:
  == domain 1  score: 542.5 bits;  conditional E-value: 1.6e-166
   Aconitase   1 ekiwdahlvee..eg..iayvpdrvllqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsvgaeealeknledefernkeryefLksaak 95 
                 +k++++h+v+e  +g  ++y+ dr+l+++vt++qa+++l++a ++vrr+++tlat+dh+vp++ + +      +++++ ++++ +r  +++ +L+++ +
  KKY24111.1  13 DKVFRDHIVDErdDGtvLLYI-DRHLVHEVTSPQAFEGLKNADRKVRRPDCTLATTDHNVPTTPRKNF-----KNVADFINEADSR--TQCVTLEENVR 103
                 689999*99664445767777.*****************************************44444.....4477788877777..9********** PP

   Aconitase  96 afgirvvppg...qGIvHqvnlEyglalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlvlavigk 191
                 +fg++++ +g   qGIvH++++E+g++lpg+tvv++DSHT+++g++G+la+G+G++e+e+vl++q+l +k+ k+++++++Gkl++gv++kD+vl+vig 
  KKY24111.1 104 DFGLTYFGLGdkrQGIVHVIGPEQGFTLPGTTVVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQCLITKRSKNMRIQVDGKLPPGVSSKDIVLHVIGV 202
                 *************************************************************************************************** PP

   Aconitase 192 lrkkgvvgkvvEffGegvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgreeaav.lveaydkaqalf.elaadedaeydkvleldlstle 288
                 ++++g++g+v+Ef+G++++sLs+e+r++i+NM++E+GA++g++++d+ t++YLk  g++ a++    +++ka a++ +l++d++a+ydk++ +d++++ 
  KKY24111.1 203 IGTAGGTGCVIEFCGSAIRSLSIEARMSICNMSIEAGARAGMIAPDQITFDYLK--GKPLAPKvDSLEWKKAIAYWsSLHSDDGASYDKEVFIDAKDII 299
                 ******************************************************..******888899********88********************* PP

   Aconitase 289 psvagpkrPqdavplselvk.k.efkeelekeaaekaley.klkegtklkdgkvdiaaigSCTNssnedvraaagllakavekglkvkpgv.ktsvaPG 383
                 p+v+++++Pqd+vp+++ v+ + +f++e +k++ ++aley +l +g k++d++vd+++igSCTNs++ed+raaa++++     g+k++p++ +++v+PG
  KKY24111.1 300 PTVSWGTSPQDVVPITGVVPgPdDFEDESKKASCKRALEYmGLAAGAKMEDVEVDKVFIGSCTNSRIEDLRAAARIVK-----GKKIAPNIkRAMVVPG 393
                 *******************99669*****************9************************************.....********99****** PP

   Aconitase 384 SevvkayleaeGlleiLekaGfevvgagCstCig.nsdrleegeaivsssNRNFegRqgpntrayLaSPelvvaaAlaG 461
                 S+ vk+++eaeG+++++e+aGfe+++agCs+C+g n+d l+++e+++s+sNRNFegRqg+ +r++L SP++++aaA+ G
  KKY24111.1 394 SGMVKEQAEAEGIDKVFEEAGFEWREAGCSMCLGmNPDILSPRERCASTSNRNFEGRQGALGRTHLLSPAMAAAAAIVG 472
                 *****************************************************************************98 PP

>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.9   0.0   3.4e-43     2e-39       2     129 ..     535     656 ..     534     658 .. 0.95

  Alignments for each domain:
  == domain 1  score: 134.9 bits;  conditional E-value: 3.4e-43
                  CCCCCCTT--CHHHHSTGGGCCGHCCHHHCCCGGTTTCCCCTTTSBBSEEEETTTTEEEEHHHHHHHHHHTT--EEEE--SSBTBS---THHHHHHHH CS
  Aconitase_C   2 ekllklkGlttedeksnvdtdlkipkqfegtianiglgnelveekrankttdlddgekedvvdaaerykkegaklvviagknfGeGSSRehAAkalrl 99 
                  +k+  lkG++++++++nvdtd++ipkqf++ti++ glg++l++e r+n++      e++++v+++e+y+   ak++v++g+nfG+GSSRehA++al++
   KKY24111.1 535 PKFRVLKGIAAPLDRANVDTDAIIPKQFLKTIKRSGLGKALFYESRFNEDGS----ENPNFVLNQEPYR--SAKILVVTGENFGCGSSREHAPWALLD 626
                  578889*************************************999987665....7999*********..9************************** PP

                  TTEEEEEES-B-HHHHHHHHHTT-EEEEES CS
  Aconitase_C 100 lGikaviaeSFerIfennliknglLplefk 129
                  +Gik via+S+++If nn +kng+Lp+ ++
   KKY24111.1 627 FGIKCVIAPSYADIFFNNTFKNGMLPMIIS 656
                  **************************9776 PP

>> DUF521  Protein of unknown function (DUF521)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.2e-06    0.0074     275     362 ..     341     430 ..     306     447 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-06
      DUF521 275 dleevleelskakeekvdlvalG.cPhlsleElrelaellkgkkkkv..kvelwvttsrevkeeaerlglveklekaGvkvlsdtCmvv...sp 362
                  l++      k ++ +vd v++G c    +e+lr+ a+++kgkk ++  k++++v  s  vke+ae++g+ +  e+aG +  +  C ++   +p
  KKY24111.1 341 GLAAGA----KMEDVEVDKVFIGsCTNSRIEDLRAAARIVKGKKIAPniKRAMVVPGSGMVKEQAEAEGIDKVFEEAGFEWREAGCSMClgmNP 430
                 333333....4568899*****96778889*************99884466788888889*******************987655543322254 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.51
# Mc/sec: 4591.35
//
Query:       KKY24112.1  [L=1001]
Description: putative phd finger and set domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-07   31.4   0.4    2.4e-06   28.1   0.0    2.7  3  SET       SET domain
    9.4e-05   22.2  11.3    0.00019   21.3  11.3    1.5  1  PHD       PHD-finger
  ------ inclusion threshold ------
        7.2    6.3   7.0         13    5.4   7.0    1.4  1  PHD_2     PHD-finger


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.84     5e+03      63      81 ..     114     132 ..      58     190 .. 0.62
   2 !   28.1   0.0     4e-10   2.4e-06     122     166 ..     339     404 ..     250     407 .. 0.80
   3 ?   -0.2   0.1      0.19   1.1e+03      51      93 ..     549     593 ..     483     654 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.84
                 SHHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
         SET  63 llqklakdqkqaekedtda 81 
                 + +k++ + ++ +k++t++
  KKY24112.1 114 GDRKAKRASSKSHKKKTKD 132
                 2222222222222222222 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 4e-10
                 C....................GTTGGGCEEXSSSSEEEEEEEE.TTSSEEEEEESSXBXTTEEEEE CS
                 x....................xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
         SET 122 a....................gplarflNHsCdpNcnltvqnv.lrgprvavfAtrdIkkGeElti 166
                 +                    g + r+l  sC+pN+++ ++   ++++++++ A  dI++G Elt 
  KKY24112.1 339 HpepfvffhpqlpiyidsrreGTVFRYLRRSCRPNVTMKTYIDsQGEYHYCFAAKEDIPAGSELTT 404
                 3455555555555566666666777***********7777777*********************96 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.19
                 SX..HHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTT CS
                 xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  51 ft..kelakasastllqklakdqkqaekedtdaalkasskaesdl 93 
                  t  +++  a+a++  ++l++dq++++k+++ +        + ++
  KKY24112.1 549 LTdrERRKIAAAEKTFERLEQDQSERKKKKRPSGGSTLNTSAPSA 593
                 235566666777777888888888888887765555555554444 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3  11.3   3.1e-08   0.00019       2      51 ..      49      92 ..      48      93 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.1e-08
                BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD  2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51
                C +C   +d+++++v+C++C++w+H +C+   ++  e+++    C  C++
  KKY24112.1 49 C-ICAF-QDDDGNTVFCEKCETWQHIECYYHGKKVPEVHN----CADCEP 92
                8.****.9**********************9999777765....999986 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   7.0    0.0022        13       5      36 .]      61      91 ..      58      91 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0022
       PHD_2  5 lsCdkCsvaVHasCYGvskesdgeeWlCrrCe 36
                ++C kC++  H +CY   k+  +    C+ Ce
  KKY24112.1 61 VFCEKCETWQHIECYYHGKKVPE-VHNCADCE 91
                89*************88777765.78899986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1001 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1021  (0.0569468); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.52
# Mc/sec: 5808.44
//
Query:       KKY24113.1  [L=310]
Description: putative nuclear pore protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0018   19.1   0.2        1.3   10.1   0.0    2.9  2  WD40      WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.062   12.6   3.5       0.08   12.2   3.5    1.2  1  ORC6      Origin recognition complex subunit 6 (ORC6)
       0.11   11.1   2.7       0.11   11.1   2.7    1.1  1  Hamartin  Hamartin protein


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00021       1.3      12      38 .]      77     112 ..      54     112 .. 0.71
   2 !    6.3   0.1    0.0033        19       6      37 ..     196     228 ..     183     229 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00021
                 S.....EEEEEEETTSSE..........EEEEETTSEEEEEE CS
        WD40  12 s.....vtslafspdgaw..........lasGsdDgtvriWd 38 
                 +     ++s+a      w          +a+G+ Dg +ri+d
  KKY24113.1  77 PphpalIRSIA------WangnirgydtIATGCADGGIRIFD 112
                 24446688884......44444447777****99******98 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0033
                 EEESS.SSEEEEEEETTSSEEEEEET.TSEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsd.DgtvriW 37 
                 +l+ H  +  +++f++ g++la ++d Dgt   W
  KKY24113.1 196 SLESHhRDCLAVRFDQTGTLLA-SMDaDGTTIYW 228
                 4566755566999*******97.75449997777 PP

>> ORC6  Origin recognition complex subunit 6 (ORC6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.5   1.3e-05      0.08     104     173 ..     115     188 ..      51     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.3e-05
        ORC6 104 t....dpkslrkqlfsTPtKsktlktalsasksssplkrrrklaneedgeeeeedapswvstsirdsrpeisrt 173
                 t    +++++++++ +TP+++ +  + +s  +++ p++ ++++  + + ++++++ ++ + +s r+++p++s++
  KKY24113.1 115 TsappTQEPQSSSTSTTPSSTAAPGSTPSTTSKPIPQSSLTTAIVGRSVQQQQQQHNQSSAQSTRRNKPNGSYA 188
                 12333566666677778888888888888888999*****************9999999999999999999998 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.7   1.9e-05      0.11     352     423 ..     114     184 ..      35     262 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.9e-05
    Hamartin 352 lelsssasllsskvsstpeaagkatpetTPakssrkl.ppslsesavvvalpassrksspprkdeksesskpd 423
                 + +++++++++s+++st+ +   a p +TP+++s+ + ++sl+   v ++++++ ++  + ++ +++ ++kp+
  KKY24113.1 114 STSAPPTQEPQSSSTSTTPS-STAAPGSTPSTTSKPIpQSSLTTAIVGRSVQQQQQQHNQ-SSAQSTRRNKPN 184
                 55677888888888888876.7999********998844444444444555555533333.333333344443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1032  (0.0575604); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 2092.69
//
Query:       KKY24114.1  [L=124]
Description: putative profilin ii [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-44  148.7   0.2    1.1e-43  148.5   0.2    1.0  1  Profilin  Profilin


Domain annotation for each model (and alignments):
>> Profilin  Profilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.5   0.2   6.2e-48   1.1e-43      11     127 .]       5     124 .]       2     124 .] 0.98

  Alignments for each domain:
  == domain 1  score: 148.5 bits;  conditional E-value: 6.2e-48
                 CHHCSSESEEEEEETTSSSEEEEETTGG--HHHHHHHHHHHH...STCHHHHH-EEETTEEEEEEEEETTEEEEEETTEEEEEEE-SSEEEEEEE-TTS CS
    Profilin  11 llgtgkvdkAaIigadggsvwaasegfkvtpeevkaivkafk...dpsklqsnGvtiggekYlviraddesiygkkgkegvvivktkqalviavydegv 106
                 l+gtg+vdkAaI++ +g+svwa+s+gf+++p+e+k++v+a+k   +p+k+qsnG++++ge+++v++ad++s+ygkkgkegvvivkt+qa+++++y+e+v
  KKY24114.1   5 LVGTGNVDKAAIFNSEGTSVWATSSGFTISPAEIKEVVDAYKdnsQPKKVQSNGLHVAGERFVVLKADERSLYGKKGKEGVVIVKTTQAILVTHYPETV 103
                 89****************************************9977***************************************************** PP

                 -HHHHHHHHHHHHHHHHHCT- CS
    Profilin 107 qpgnankavekladyLisagy 127
                 qpg a+++ve+l+dyLi  gy
  KKY24114.1 104 QPGVAANTVEQLGDYLIGVGY 124
                 ******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 846.57
//
Query:       KKY24115.1  [L=206]
Description: putative gtp-binding protein ypt2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-65  218.6   0.0      4e-65  218.3   0.0    1.0  1  Ras          Ras family
      9e-34  116.3   0.1    1.3e-33  115.8   0.1    1.2  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    5.4e-14   52.0   0.0    6.2e-14   51.8   0.0    1.1  1  Arf          ADP-ribosylation factor family
    1.8e-05   24.4   0.0    3.7e-05   23.3   0.0    1.5  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    0.00016   21.1   0.0    0.00019   20.9   0.0    1.2  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
     0.0013   18.7   0.1        1.8    8.4   0.0    2.2  2  RsgA_GTPase  RsgA GTPase
     0.0024   18.0   0.0     0.0065   16.6   0.0    1.6  2  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.013   15.0   0.0    1.2  1  SRPRB        Signal recognition particle receptor beta subuni
      0.035   13.6   0.0       0.17   11.4   0.0    2.0  1  FeoB_N       Ferrous iron transport protein B
      0.066   12.7   0.0       0.12   11.9   0.0    1.3  1  AAA_7        P-loop containing dynein motor region
      0.071   13.5   0.0        7.2    7.0   0.0    2.3  2  AAA          ATPase family associated with various cellular a
      0.081   12.0   0.0       0.49    9.4   0.0    2.0  2  MCM          MCM P-loop domain
       0.09   13.0   0.1       0.43   10.9   0.1    2.1  1  AAA_22       AAA domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.3   0.0   2.9e-68     4e-65       1     161 [.       9     169 ..       9     170 .. 0.99

  Alignments for each domain:
  == domain 1  score: 218.3 bits;  conditional E-value: 2.9e-68
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 Kl+l+Gds+vGK++ llrf +d+F+ ++++Tig+df++++ie+dgk+vkl+iwDTAGqe+f++++++yyr+a+gillvyd+t+++sf+n+++w++++++
  KKY24115.1   9 KLLLIGDSGVGKSCCLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIRTWFSNVEQ 107
                 89************************************************************************************************* PP

                 HSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                 +a+e v+ +L+GnK+D eekravste+g++la+elg++fle+SAk+n n+e+af++l+++i+
  KKY24115.1 108 HASEGVNKILIGNKCDWEEKRAVSTEQGQALADELGIPFLEVSAKSNINIEKAFYSLASDIK 169
                 *********************************************************99986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.8   0.1   9.3e-37   1.3e-33       1     119 [.       9     123 ..       9     124 .. 0.92

  Alignments for each domain:
  == domain 1  score: 115.8 bits;  conditional E-value: 9.3e-37
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K++l+GdsgvGK++ l rf ed+f+++  +tig+df+ +++ +++g       k+vkl+iWDtaGqerfr++++ y+r+a  ++lvyd   ++s++n++
  KKY24115.1   9 KLLLIGDSGVGKSCCLLRFSEDSFTPSFITTIGIDFKIRTI-ELDG-------KRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDvtdEKSFNNIR 99 
                 89**********************************98876.4444.......6899******************************976566889*** PP

                 HHHHHHHHHCSSS.-EEEEEE-TT CS
         Roc  97 eWlkelkkvagks.pvilvgnkiD 119
                 +W+++++++a++  + il+gnk+D
  KKY24115.1 100 TWFSNVEQHASEGvNKILIGNKCD 123
                 *********9986478*******9 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   4.5e-17   6.2e-14      12     134 ..       5     131 ..       1     173 [. 0.80

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 4.5e-17
                 TTEEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHH CS
         Arf  12 kkelrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLk 105
                  +++++ll+G  + GK+  l ++++++++   + Tig  f+++++e   k +k+++wD  Gqe+ R +   Y++   +++ v D++d++ +++ ++ ++
  KKY24115.1   5 AQQIKLLLIGDSGVGKSCCLLRFSEDSFTPsFITTIGidFKIRTIELdgKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIRTWFS 103
                 5899**********************9987456666533788888876699***********************************************9 PP

                 HHCTSGCCTTSEEEEEEE-TTSTTSS-HH CS
         Arf 106 alleeeelkevallvlaNKqDlpealsee 134
                 ++ e++  + v  ++++NK D +e    +
  KKY24115.1 104 NV-EQHASEGVNKILIGNKCDWEEKRAVS 131
                 96.5667789999999*****98654332 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.7e-08   3.7e-05      53     183 ..      41     159 ..      38     188 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.7e-08
                 TSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTBSTHHHHH....HHHHHHHTTTEEEEEEESCGSTHHHH..HHHHHH CS
    GTP_EFTU  53 giTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqtee....vlrlalkegvpiivfiNKmDrlkael..keivee 145
                 gi  k+ +i+l+  +k+ ++++ Dt G + F   +++ +r + g +lv d+++    +  +    ++++  +egv+ i++ NK+D  +++    e+ ++
  KKY24115.1  41 GIDFKIRTIELD--GKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIRtwfsNVEQHASEGVNKILIGNKCDWEEKRAvsTEQGQA 137
                 555667777777..**************************************9966554441111457888999***********87444300222223 PP

                 HHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHH CS
    GTP_EFTU 146 vkqklsrkeeklekygekgekevpvvfgSalkgegvkt 183
                 + ++l                 +p++ +Sa+++ ++++
  KKY24115.1 138 LADEL----------------GIPFLEVSAKSNINIEK 159
                 33333................35666666666666654 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.4e-07   0.00019       1     122 [.       9     123 ..       9     161 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.4e-07
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsi.iFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 k+LL+G sg GK++       d +++  ++++g+  +++  e+   + ++l++wD  Gqe+f + +        +r    ++ V Dv++   e++++++
  KKY24115.1   9 KLLLIGDSGVGKSCCLLRfSEDSFTPSFITTIGIDFKIRTIEL-DGKRVKLQIWDTAGQERFRTIT-----TAYYRGAMGILLVYDVTD---EKSFNNI 98 
                 89***********865440345667777777777777776666.36689************98876.....444555556777889984...4555566 PP

   Gtr1_RagA  99 keilealrqyspeakvfvli.hKmD 122
                 ++ ++++ q+  e   ++li +K+D
  KKY24115.1  99 RTWFSNVEQHASEGVNKILIgNKCD 123
                 6666666666555555555534555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0014       1.9     102     116 ..      10      24 ..       5      41 .. 0.84
   2 !    8.4   0.0    0.0013       1.8      43      97 ..     109     164 ..      80     173 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0014
                  EEEECSTTSSHHHHH CS
  RsgA_GTPase 102 svlvGqSGvGKStLi 116
                   +l+G SGvGKS  +
   KKY24115.1  10 LLLIGDSGVGKSCCL 24 
                  5799********755 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0013
                  HHTT-EEEEEEE-GGG--HHH.HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHC CS
  RsgA_GTPase  43 eekgiepvivlnKiDlleeee.eleelkeelealgyevllvsaktkegleelkell 97 
                   ++g++ +++ nK+D  e++  ++e+ ++   +lg+++l vsak++ ++e+    l
   KKY24115.1 109 ASEGVNKILIGNKCDWEEKRAvSTEQGQALADELGIPFLEVSAKSNINIEKAFYSL 164
                  56889999*********999978888899999************999998765555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.7e-06    0.0065       2      96 ..      10     101 ..       9     121 .. 0.66
   2 ?   -1.5   0.0       1.8   2.5e+03      50      86 ..     138     176 ..     120     184 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.7e-06
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT..EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg..keielvDtpGliegaseekglgkaflaleeadlillvvdas.eeklkpldee 96 
                  +++G + vGKS  + + +++    s +    +d + ++++l+g   +++++Dt+G  e   + + ++ a+ +   a  illv d++ e+++++++  
  KKY24115.1  10 LLLIGDSGVGKSCCLLRFSEDSFTPSFITTIGIDFKIRTIELDGkrVKLQIWDTAG-QE---RFRTITTAYYR--GAMGILLVYDVTdEKSFNNIRTW 101
                 579****************987766666666666677777766534679*******.44...23355555553..48999999998843344444333 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.8
                 EEECGGCS..S.HHHHHHHHHHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1  50 lvDtpGli..e.gaseekglgkaflaleeadlillvvdas 86 
                 l+D  G+   e +a+++ +++kaf +l  +d+   ++d s
  KKY24115.1 138 LADELGIPflEvSAKSNINIEKAFYSLA-SDIKKRLIDTS 176
                 6666664222345555667777777644.36666666644 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   9.2e-06     0.013       4     129 ..       8     129 ..       5     178 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.2e-06
                 -EEEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG.....GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHH CS
       SRPRB   4 pavllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv..ksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEll 99 
                  ++ll+G s  GK   + r ++ds++++ +      +  ++   + k  kl++ D  G+e++r+  +    + + + g++ v D t d+k  +++  ++
  KKY24115.1   8 IKLLLIGDSGVGKSCCLLRFSEDSFTPSFITTiGIDFKIRTieLDGKRVKLQIWDTAGQERFRTITTA---YYRGAMGILLVYDVT-DEKSFNNIRTWF 102
                 5789********************999876654445555542346677888999*********85443...688999*****9987.899999999999 PP

                 HHHHHHHHHHTT---EEEEEE-TTSTT--- CS
       SRPRB 100 yeilliteklkdavdiliACnKqelflaks 129
                  ++  +  +  ++  ili  nK +    + 
  KKY24115.1 103 SNVEQHASEGVNK--ILI-GNKCDWEEKRA 129
                 9987776633333..333.45555544444 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012      0.17      99     151 ..     106     159 ..       8     164 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                 HHHHHTTSSEEEEEETHHHHHHTTEEE-H.HHHHHHHTS-EEEEBTTTTBTHHH CS
      FeoB_N  99 lqllelgvpvvlalnmideaekkgieidl.kkLsekLgvpvvktsakkkegiee 151
                  q +  gv+ +l+ n++d  ek+ ++ ++ ++L+++Lg+p +++sak++ +ie+
  KKY24115.1 106 EQHASEGVNKILIGNKCDWEEKRAVSTEQgQALADELGIPFLEVSAKSNINIEK 159
                 56666788999999*******99999886378*****************99987 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.6e-05      0.12      32      73 ..       6      48 ..       4      55 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.6e-05
       AAA_7 32 nkkpvllvGptGtGKtviikd.llkkldkekylsltinfsaqt 73
                ++ ++ll+G++G+GK++++ +   +++ ++ ++++ i f+ +t
  KKY24115.1  6 QQIKLLLIGDSGVGKSCCLLRfSEDSFTPSFITTIGIDFKIRT 48
                67899*************9995556677777777888887776 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0052       7.2       1      64 [.      10      86 ..      10     128 .. 0.72
   2 ?    4.4   0.0     0.034        46      16      50 ..     136     172 ..     132     183 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0052
                EEEESSTTSSHHHHHHHHHHHH.............THEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTSTSEEEEE CS
         AAA  1 vllyGppGtGKTllakavakel.............gvefleisgsell.skyvgesekkirelfkeakekakpsilfi 64
                +ll+G  G+GK+ +     +++             +++ +e++g+++  + +  ++++++r + ++  + a   il++
  KKY24115.1 10 LLLIGDSGVGKSCCLLRFSEDSftpsfittigidfKIRTIELDGKRVKlQIWDTAGQERFRTITTAYYRGA-MGILLV 86
                69***********9999999944444444444444788899999888856677777777777777666665.556555 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.034
                 HHHHHHHTHEEEEEETTTCS..SSSTTHHHHHHHHHH CS
         AAA  16 kavakelgvefleisgsell..skyvgesekkirelf 50 
                 +a+a elg++fle+s+++ +  +k +   +++i++ +
  KKY24115.1 136 QALADELGIPFLEVSAKSNIniEKAFYSLASDIKKRL 172
                 799*************998744455555555555555 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00036      0.49      57      80 ..       7      31 ..       4      43 .. 0.71
   2 ?   -0.1   0.0      0.29     4e+02      51      71 ..      74      94 ..      55     109 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00036
                S-EEEEEESSTSTHHH.HHHHHHHH CS
         MCM 57 dinvllvgdpgtaKsq.lLkyvekl 80
                +i++ll+gd+g++Ks  lL++ e+ 
  KKY24115.1  7 QIKLLLIGDSGVGKSCcLLRFSEDS 31
                799************7245555444 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.29
                SSBBCSS-EEEEEESSTSTHH CS
         MCM 51 ktklrgdinvllvgdpgtaKs 71
                 + +rg + +llv d+   Ks
  KKY24115.1 74 TAYYRGAMGILLVYDVTDEKS 94
                45699*********9999988 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00031      0.43       8      27 ..      10      29 ..       6     127 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00031
      AAA_22  8 lvvtGesGtGKTtllrrlle 27
                l+++G sG+GK+ +l r+ e
  KKY24115.1 10 LLLIGDSGVGKSCCLLRFSE 29
                689***********999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1464.92
//
Query:       KKY24116.1  [L=1202]
Description: putative atp synthase regulation protein nca2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-106  355.7   0.0     3e-106  354.8   0.0    1.4  1  NCA2       ATP synthase regulation protein NCA2
    6.6e-09   35.7   0.0    1.6e-08   34.4   0.0    1.6  1  SGL        SMP-30/Gluconolactonase/LRE-like region
  ------ inclusion threshold ------
      0.037   14.1   0.0       0.13   12.4   0.0    2.0  1  Str_synth  Strictosidine synthase


Domain annotation for each model (and alignments):
>> NCA2  ATP synthase regulation protein NCA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.8   0.0    5e-110    3e-106       2     289 .]     912    1192 ..     911    1192 .. 0.97

  Alignments for each domain:
  == domain 1  score: 354.8 bits;  conditional E-value: 5e-110
        NCA2    2 lllspsslrllvnsreeilewiqeavetvkgfwknwvvePikellktirhdegseiaimskesLesdleSLerMvvdFaednse..sklteaelekl 96  
                  ll+++++l+++ n+r+ei++wiqe+++t+++fw nwv+ePik++++tirhde se+aimsk+sL++d++SLerMvv+Fa d++e  ++ ++++l+++
  KKY24116.1  912 LLSGSTLLKIIANRRAEIITWIQEFGATTRDFWLNWVIEPIKKVVGTIRHDEASEVAIMSKDSLRADRDSLERMVVEFAADHPEnsTAYSHVQLQEI 1008
                  7999******************************************************************************9999899******** PP

        NCA2   97 rekvregdltpvlkaYEkelrsPiknlvsGeLvraLLIQvqktKvDvevAlsgiDklLkSqeLvfgivaltPallilylllkllrallkkgrkaerg 193 
                   +kv+egdltpvlkaYE++lr+P++++v+G+L+raLLIQvqktKvDvevA+ giD+lLkSqeLvfg+v+ltP++l++++++++l ++++ +r+  r 
  KKY24116.1 1009 GAKVKEGDLTPVLKAYERDLRKPFMGTVRGDLIRALLIQVQKTKVDVEVAIGGIDSLLKSQELVFGLVGLTPGILVSFATFRWLGTVFG-NRRGGRL 1104
                  ****************************************************************************************9.6664688 PP

        NCA2  194 krarrqllrslrnierlltessaeeeekeekeeenelsykdqGllllevhvLrklaekllpkelekefleDledLekvklgvekklkvveRirrvY 289 
                   r++ +++r+lrni+r+l   s++       +++++lsykd+G+l+ evhvLr+ a +++p+++++efleD+ +L++vk+gv+++ k+++Rir++Y
  KKY24116.1 1105 ARQQGETRRTLRNIDRILDG-STQ-------TQDGMLSYKDHGMLMGEVHVLRQKALAVIPARIHREFLEDVYELSDVKVGVHRQGKALHRIRWAY 1192
                  899***************88.444.......56799***********************************************************9 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   2.7e-12   1.6e-08      52     166 ..     215     347 ..     187     367 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 2.7e-12
         SGL  52 grlvvasksgl......alldlas.geletladeeedekpllrfNDgvvdp.dGrlwfGtmgdeeakgeev......galyrldpd.gklervlddlti 135
                  ++v++++++l      +++d+++  +   l+ +++++ p +++ D+v+ p dG+l+f++++++ ++g ++      g +yr+dp+ g +++v+++   
  KKY24116.1 215 SGIVICAQGSLkdpagiVYVDTRRpHKAHMLLNNFQGR-PFNSPCDIVANPlDGSLYFTDPHYGYERGFRPkpklpgGHIYRFDPEsGDCRVVANGHER 312
                 67777777777777653555533314777788889888.***********989***********9999988999************************* PP

         SGL 136 pNGlawspdgktlYl...aDsltrk.iwaydvdae 166
                 p Gla+spd  tlY+    D   ++ i+ay++  +
  KKY24116.1 313 PGGLALSPDYGTLYVselSDKFGGTtIYAYSIVNT 347
                 ***************55545444445777776554 PP

>> Str_synth  Strictosidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.3e-05      0.13       9      77 ..     266     331 ..     259     334 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.3e-05
   Str_synth   9 tgvlyftdsSskydrrqvllallegdktGrllkydkstkvvkvlldkLyfanGialsedgsfvlvceta 77 
                 +g lyftd  + y+r    +    + + G ++++d++    +v+++    + G+als+d   + v+e++
  KKY24116.1 266 DGSLYFTDPHYGYERG---FRPKPKLPGGHIYRFDPESGDCRVVANGHERPGGLALSPDYGTLYVSELS 331
                 6788888888888763...334566789*******************************9999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.47
# Mc/sec: 7612.61
//
Query:       KKY24117.1  [L=542]
Description: putative origin recognition complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-14   53.6   2.2    7.8e-14   52.4   0.2    2.3  2  AAA_16        AAA ATPase domain
    1.9e-09   37.9   0.0    4.7e-09   36.6   0.0    1.6  1  AAA_22        AAA domain
    3.2e-08   34.1   0.0    7.9e-08   32.8   0.0    1.7  1  AAA           ATPase family associated with various cellular 
    1.5e-06   28.2   0.0    4.9e-06   26.6   0.0    1.8  1  NACHT         NACHT domain
    1.6e-06   28.2   0.1    4.8e-06   26.6   0.0    1.8  2  ATPase_2      ATPase domain predominantly from Archaea
    4.8e-06   26.4   0.0    9.8e-06   25.4   0.0    1.6  1  AAA_30        AAA domain
    2.3e-05   23.7   0.1    3.9e-05   23.0   0.1    1.3  1  NB-ARC        NB-ARC domain
    2.4e-05   24.7   0.0      5e-05   23.7   0.0    1.5  1  AAA_19        AAA domain
    6.2e-05   22.4   0.1    0.00045   19.6   0.0    1.9  2  KAP_NTPase    KAP family P-loop domain
    0.00012   22.1   0.1     0.0012   18.9   0.0    2.6  2  AAA_14        AAA domain
    0.00015   21.4   0.0    0.00038   20.1   0.0    1.6  1  AAA_29        P-loop containing region of AAA domain
    0.00016   20.9   0.0    0.00027   20.2   0.0    1.3  1  DUF815        Protein of unknown function (DUF815)
     0.0026   17.6   0.0     0.0058   16.4   0.0    1.6  1  ATP_bind_1    Conserved hypothetical ATP binding protein
     0.0032   18.0   0.1      0.032   14.8   0.0    2.4  2  ABC_tran      ABC transporter
     0.0041   16.5   0.2       0.37   10.2   0.1    2.8  2  TniB          Bacterial TniB protein
     0.0046   16.5   0.0      0.009   15.5   0.0    1.4  1  AAA_7         P-loop containing dynein motor region
     0.0056   15.8   0.0       0.01   14.9   0.0    1.4  1  T2SSE         Type II/IV secretion system protein
     0.0081   16.7   0.0      0.028   15.0   0.0    1.9  1  AAA_18        AAA domain
  ------ inclusion threshold ------
      0.016   14.5   0.0      0.035   13.4   0.0    1.5  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
      0.034   14.3   0.0       0.23   11.6   0.0    2.4  2  AAA_33        AAA domain
      0.036   14.0   0.0       0.11   12.4   0.0    1.8  1  NTPase_1      NTPase
      0.042   13.3   0.0      0.084   12.3   0.0    1.5  1  SMC_N         RecF/RecN/SMC N terminal domain
      0.047   13.3   0.2       0.33   10.5   0.0    2.4  3  cobW          CobW/HypB/UreG, nucleotide-binding domain
      0.047   13.1   0.0        0.1   12.0   0.0    1.5  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.048   13.7   0.0       0.22   11.5   0.0    2.3  1  AAA_5         AAA domain (dynein-related subfamily)
      0.048   12.5   0.0      0.078   11.9   0.0    1.2  1  AFG1_ATPase   AFG1-like ATPase
       0.13   12.6   0.0       0.34   11.3   0.0    1.7  1  RNA_helicase  RNA helicase
       0.14   12.7   0.1       0.14   12.7   0.1    2.4  2  AAA_23        AAA domain
       0.14   11.6   0.0        6.2    6.2   0.0    2.4  2  Arf           ADP-ribosylation factor family
       0.15   12.2   0.4         28    4.8   0.0    3.4  3  MMR_HSR1      50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2      0.19   1.1e+02      92     143 ..     250     313 ..     199     313 .. 0.74
   2 !   52.4   0.2   1.3e-16   7.8e-14       2     169 ..     308     468 ..     307     469 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.19
      AAA_16  92 aeleawrekleeala...........avpelagaeasrllellkrll.allsrderplvlvlDd 143
                 a+le+ + + +e l            +v+e+ ++e  + ++ +++l+ a+ls ++r+ ++ lD+
  KKY24117.1 250 ANLEELPVEEPELLDpapiveiaepsIVREDVDDETVDAFDIIQKLVlAKLSGRRRTALIALDE 313
                 333444443344333666666666889999999999************9999999999999996 PP

  == domain 2  score: 52.4 bits;  conditional E-value: 1.3e-16
      AAA_16   2 lvGReeeleqLlsale.rvrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawre 99 
                 l+  +ee ++++++ + +v +g+++++l++G++G+GK+++++++  +l ++       + d++           +    +l   l ++++ a++e wr+
  KKY24117.1 308 LIALDEEYKKVQHVAQqTVEAGEGNSMLIIGPRGSGKTTMIESVVSELMES-------QKDDF----------HIV---RLSGFLQTDDRLALREIWRQ 386
                 667899*****8888879999999*********************988877.......44444..........122...46666667777777888888 PP

      AAA_16 100 kleealaavpelagaeasrllellkrllallsrder............plvlvlDdlqwadeaslql.laaLlrlles.k.pllv 169
                  l +++    e+++ + s+ ++++++llalls++e+             +++++D+++ + ++++q  l++L++ ++s k p++v
  KKY24117.1 387 -LGREMD--VEDDANKVSSYADTMASLLALLSHPEEhsdtldadvttkSIIFIIDEFDLFATHPRQTlLYNLFDIAQSrKaPIAV 468
                 .444444..445555559999999999988888887899******9967**************************9997567766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   7.8e-12   4.7e-09       5     129 ..     331     470 ..     326     476 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 7.8e-12
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevv.fvtlpsst.sskdllrellralglelka........erlsseellealeqalrarav.. 91 
                  ++++++G+ G+GKTt ++ ++++l e +k + + +++  f + + +   +++++r+l r++++e +a          +s+ +ll++ e+++++ ++  
  KKY24117.1 331 GNSMLIIGPRGSGKTTMIESVVSELMESQKDDFHIVRLSgFLQ-TDDRlALREIWRQLGREMDVEDDAnkvssyadTMASLLALLSHPEEHSDTLDAdv 428
                 6799*********************765544334444443333.333369999999999999999999****988777777777777788888777799 PP

      AAA_22  92 ...ielliiDEaqhlr...seealeeLrsllnlsrkgvqliLvG 129
                      ++iiDE++ +    ++++l +L +++   + + ++ ++G
  KKY24117.1 429 ttkSIIFIIDEFDLFAthpRQTLLYNLFDIAQ--SRKAPIAVFG 470
                 99999*********987655999999988888..8888888887 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   1.3e-10   7.9e-08       1     126 [.     334     491 ..     334     495 .. 0.76

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 1.3e-10
                 EEEESSTTSSHHHHHHHHHHHH......THEEEEEETTTCSSS.........................STTHHHHHHHHHHHHHHHTS.........TS CS
         AAA   1 vllyGppGtGKTllakavakel......gvefleisgsellsk.........................yvgesekkirelfkeakeka.........kp 59 
                 +l++Gp G GKT+++++v++el      +++++++sg   +++                            ++++++ +l+++ +e++         k 
  KKY24117.1 334 MLIIGPRGSGKTTMIESVVSELmesqkdDFHIVRLSGFLQTDDrlalreiwrqlgremdveddankvsSYADTMASLLALLSHPEEHSdtldadvttKS 432
                 79*******************9776633355666666555544999************99999999995555555555555555666678888887444 PP

                 EEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESS...GGGSTHHHHSTTSSE CS
         AAA  60 silfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnr...pdkldpallrgRfdr 126
                  i++iDE+d +a++            +  L++ +d  +++++++ v g +++    ++l++ +  +Rf++
  KKY24117.1 433 IIFIIDEFDLFATHP----------RQTLLYNLFDIAQSRKAPIAVFGLSTKvdvAEHLEKRVK-SRFSH 491
                 78889******9998..........58899999999999999**********444445555555.77765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   8.2e-09   4.9e-06       3     141 ..     334     483 ..     332     498 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 8.2e-09
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-.....-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEE............... CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna..rsladllfsqlpepaapvsevwavllelperlL............... 84 
                 +++ G+ GsGKTt+++++++++ e++ +     + ++  ++ l+++ +   r + ++l ++++ + ++   +++  +    +lL               
  KKY24117.1 334 MLIIGPRGSGKTTMIESVVSELMESQKDD----FHIVRLSGFLQTDDRLalREIWRQLGREMDVEDDAN--KVSSYADTMASLLallshpeehsdtlda 426
                 799***********************555....444444444444333312566666666655444443..3466667777777777888888899999 PP

                 ........EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSC CS
       NACHT  85 ........lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdleeqlee 141
                         +i+D +D ++t+++q       tlL +l+  +  ++a++ +   ++++ d++e le+
  KKY24117.1 427 dvttksiiFIIDEFDLFATHPRQ-------TLLYNLFDIAQSRKAPIAVFGLSTKV-DVAEHLEK 483
                 99999999***********9999.......99999999888888888776666666.56665555 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       6.5   3.9e+03      96     127 ..     282     314 ..     243     324 .. 0.71
   2 !   26.6   0.0   8.1e-09   4.8e-06      14     186 ..     325     493 ..     312     508 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 6.5
    ATPase_2  96 keksklvfkaiel.llekikkkgkkiiiiiDel 127
                 ++++ ++f  i++ +l+k++ +++   i +De 
  KKY24117.1 282 DDETVDAFDIIQKlVLAKLSGRRRTALIALDEE 314
                 456667777776426778888888888888884 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 8.1e-09
    ATPase_2  14 ilerepneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefie........eeeekkklekalgiavpkaeleeilkeksklvfk 104
                  +e ++ + ++i Gp+gsGKt+++  ++++l +++k+ + +  l++  ++  +  ++        e ++++ ++k+ + a   a+l           ++
  KKY24117.1 325 TVEAGEGNSMLIIGPRGSGKTTMIESVVSELMESQKDDFHIVRLSGFLQTDDRLALReiwrqlgrEMDVEDDANKVSSYADTMASL----LALLSHPEE 419
                 5677889999*********************999*999999999887777666666666666665444444444443222222222....245667777 PP

    ATPase_2 105 aielllekikkkgkkiiiiiDelqklidlglngaellvkeLlnliesltkekhlcvviclsSeglfiervyneselegrhky 186
                   + l ++++ k   ii iiDe+           + l+++L+++ +s   +k  + v+ ls +  + e ++++ + +  h+y
  KKY24117.1 420 HSDTLDADVTTK--SIIFIIDEFDLFA---THPRQTLLYNLFDIAQS---RKAPIAVFGLSTKVDVAEHLEKRVKSRFSHRY 493
                 888888888765..89******98877...45569999999999888...88899999888877777766666665555555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.6e-08   9.8e-06       3     109 ..     316     452 ..     314     472 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.6e-08
      AAA_30   3 naeQaaavealltsgdrvavltGpAGtGKttalkal.reaweaag..grviglAptgkaAkvLa..................eelgieastiakllkrl 80 
                 ++ Q+ a +++ +++   +++ Gp G+GKtt+++++  e++e+++  ++++ l+   +  ++La                  +++   a+t+a+ll  l
  KKY24117.1 316 KKVQHVAQQTVEAGEGNSMLIIGPRGSGKTTMIESVvSELMESQKddFHIVRLSGFLQTDDRLAlreiwrqlgremdveddaNKVSSYADTMASLLALL 414
                 667888888888888889****************99789999885568888888888899998887888777766666555446667999999999888 PP

      AAA_30  81 k.........grarlepg.tllivDEagmvdtkqlaall 109
                           + a+++++  ++i+DE  + +t+  ++ll
  KKY24117.1 415 ShpeehsdtlD-ADVTTKsIIFIIDEFDLFATHPRQTLL 452
                 8******9985.4555554999*****999877655544 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   6.6e-08   3.9e-05       3     100 ..     316     411 ..     314     420 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 6.6e-08
                 HHHHHHHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEEEEE...SXXHHHHHHHXXHHHHHCCCTTSSSS-STTSHHHHHHH CS
      NB-ARC   3 ksvekviekLlekdelqslvvalvGmgGvGKttlakqilnksdevegrFdsvawvvvs...ktdkseeiletilkeLslseddleekeeveslkrklvr 98 
                 k+v++v+++ +e +e +   + + G  G+GKtt+++++++++ e ++  d ++ v +s   +td+ +  l++i+++L+++ d  +  ++v s ++ +  
  KKY24117.1 316 KKVQHVAQQTVEAGEGN--SMLIIGPRGSGKTTMIESVVSELMESQK--DDFHIVRLSgflQTDD-RLALREIWRQLGREMDVEDDANKVSSYADTMAS 409
                 57889999999888888..999*******************555555..5555555552215555.445566999999998888888877776666665 PP

                 HC CS
      NB-ARC  99 lL 100
                 lL
  KKY24117.1 410 LL 411
                 55 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   8.3e-08     5e-05       4     125 ..     325     455 ..     322     470 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 8.3e-08
      AAA_19   4 avealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakel..rerlaalgae.............atTiHrlalldfddlltea 87 
                  vea + + +l++++ G+GKT++++ +v++l e ++ +  +i+ ++   +  ++l  re  ++lg+e             a+T+ +l  l++ +  +e 
  KKY24117.1 325 TVEAGEGNSMLIIGPRGSGKTTMIESVVSELMESQKDD-FHIVRLSGFLQTDDRLalREIWRQLGREmdveddankvssyADTMASL--LALLSHPEEH 420
                 5667778899************************9887.66665554444444431144444556667788999999999*****99..6666666566 PP

      AAA_19  88 lelleeaeeekklqeeellivDEfqdvd.elqyrLlkal 125
                    l+   ++k +    ++i+DEf        ++Ll +l
  KKY24117.1 421 SDTLDADVTTKSI----IFIIDEFDLFAtHPRQTLLYNL 455
                 6676654444444....9*****9877655555555555 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   7.5e-07   0.00045      22      91 ..     333     401 ..     318     409 .. 0.84
   2 ?   -0.5   0.1      0.95   5.7e+02     166     185 ..     422     443 ..     415     463 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 7.5e-07
  KAP_NTPase  22 vvgLygkWGsGKssllnkledelkefakpvrflfaefnawsfkggddavaellaaLadaleeeygqlatk 91 
                 +  + g+ GsGK+++++++ +el e  ++++f++++++ +++++   a++e+ ++L +++  e ++++++
  KKY24117.1 333 SMLIIGPRGSGKTTMIESVVSELMES-QKDDFHIVRLSGFLQTDDRLALREIWRQLGREMDVEDDANKVS 401
                 55666777***********9999999.89***************99999999999988887777776665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.95
  KAP_NTPase 166 ktLda..lqkrlVvviDdLDrc 185
                 +tLda    k ++++iD+ D  
  KKY24117.1 422 DTLDAdvTTKSIIFIIDEFDLF 443
                 68888889999*******9955 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.7     1e+03      34      72 ..     277     313 ..     265     329 .. 0.65
   2 !   18.9   0.0     2e-06    0.0012       4      39 ..     333     369 ..     330     484 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.7
      AAA_14  34 lyinldderdkkladpekllelileklke.ekktylflDE 72 
                 +  ++dde+ ++   ++ + +l+l+kl++ +++ ++ lDE
  KKY24117.1 277 VREDVDDETVDA---FDIIQKLVLAKLSGrRRTALIALDE 313
                 555555555543...4445677777765556788899998 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 2e-06
      AAA_14   4 ilvitGaRrvGKTtllkqlikell.vkkesilyinld 39 
                  ++i G+R +GKTt+++ +++el+  +k+++  + l 
  KKY24117.1 333 SMLIIGPRGSGKTTMIESVVSELMeSQKDDFHIVRLS 369
                 679*******************999666655555544 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   6.4e-07   0.00038      15      51 ..     324     360 ..     319     364 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 6.4e-07
      AAA_29  15 htieidlkgatlltGpsGsGKSTllDAiqalLvpakk 51 
                 +t+e  + +++l++Gp GsGK+T++ ++   L+ ++k
  KKY24117.1 324 QTVEAGEGNSMLIIGPRGSGKTTMIESVVSELMESQK 360
                 6777775559***************999887776665 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   4.6e-07   0.00027      26      81 ..     304     359 ..     289     387 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4.6e-07
      DUF815  26 klddLvgidkqkealventeqfleglpannvLLwGarGtGKSslvkallneyaeeg 81 
                 + + L+ +d++ +++++ ++q +e  + n +L++G rG+GK +++ ++++e+ e++
  KKY24117.1 304 RRTALIALDEEYKKVQHVAQQTVEAGEGNSMLIIGPRGSGKTTMIESVVSELMESQ 359
                 667899*******************************************9988765 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   9.7e-06    0.0058       1      32 [.     336     368 ..     336     370 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 9.7e-06
  ATP_bind_1   1 vvGpaGsGKttfvgal.seilelrgrsvavvNL 32 
                 ++Gp GsGKtt+++++ se++e+++ ++++v L
  KKY24117.1 336 IIGPRGSGKTTMIESVvSELMESQKDDFHIVRL 368
                 79***********98537999999999999976 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1       1.6   9.4e+02      51     101 ..     179     230 ..     135     243 .. 0.67
   2 !   14.8   0.0   5.3e-05     0.032       6      37 ..     326     357 ..     321     439 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1.6
                 G..B-HHHCCHCEEEE-SS--S-TTSBHHHHHHHTCHHHHHHHSTTGGTTCBG CS
                 x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  51 e..qeleslrkeigvlpqepqlfpeltvrenesdeeiekalsklglkelkdtv 101
                    ++++  rk    l++e  + p +t+r +e++++i++a +++  + + +++
  KKY24117.1 179 GssKKRQARRKATDNLEEE-AILPLVTARIEEDTVQISDATEEVATPSKSKRK 230
                 2434444444444444444.777777777789999999999999988866665 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 5.3e-05
                 EEEETTSEEEEEESTTSSHHHHHHHHTTSS-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   6 lklkegekvaivGenGaGKStLlkllagllkp 37 
                 ++  eg+ + i+G+ G+GK+t+++ +  +l  
  KKY24117.1 326 VEAGEGNSMLIIGPRGSGKTTMIESVVSELME 357
                 56678999***************987766554 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       4.3   2.6e+03     154     182 ..      97     127 ..      93     132 .. 0.79
   2 !   10.2   0.1   0.00063      0.37      34     180 ..     330     490 ..     311     496 .. 0.51

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.3
        TniB 154 kipivlvGteealralrtDpqla..sRFepi 182
                 ++ ++ vG++e + + ++D q +  +RF+p+
  KKY24117.1  97 DVQMIDVGVDESIGLRSSDRQRKrpRRFSPE 127
                 678999********999**998733588876 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00063
        TniB  34 rmpnlllvGdsnnGKtmivekFarlhppekdedaekvpvlvvqappkpdekrlyaaiLealgaplkara...................rvskleqqvlr 113
                 + +++l++G+   GKt+++e+  ++  ++++ d +   ++ ++   + d++   ++i ++lg ++  ++                   +  + ++++l 
  KKY24117.1 330 EGNSMLIIGPRGSGKTTMIESVVSELMESQKDDFH---IVRLSGFLQTDDRLALREIWRQLGREMDVEDdankvssyadtmasllallSHPEEHSDTLD 425
                 55789**************9988776665544444...4444444444444444444444444444444111122222222211111111111111111 PP

        TniB 114 llrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvGteealralrt.DpqlasRFe 180
                    ++k  + iiDE++ +     + ++++l  l  + +  k pi ++G  + +++ ++ ++ ++sRF+
  KKY24117.1 426 ADVTTKSIIFIIDEFDLFA---THPRQTLLYNLFDIAQSRKAPIAVFGLSTKVDVAEHlEKRVKSRFS 490
                 1123344456666666554...3344455555556666666666666666665554332555666665 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.5e-05     0.009      32      61 ..     330     359 ..     312     377 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.5e-05
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkldkek 61 
                 +++++l++Gp G+GKt++i++++++l +++
  KKY24117.1 330 EGNSMLIIGPRGSGKTTMIESVVSELMESQ 359
                 4679*****************877776433 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.7e-05      0.01     115     157 ..     315     359 ..     267     367 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.7e-05
       T2SSE 115 kekiaevlrkavr..erglilvsGgTgsGKttllyallkeinksd 157
                  +k+++v ++ v+  e  ++l+ G+ gsGKtt++ ++++e+ +s+
  KKY24117.1 315 YKKVQHVAQQTVEagEGNSMLIIGPRGSGKTTMIESVVSELMESQ 359
                 36667777777662246789******************9998873 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.6e-05     0.028       2      93 ..     335     427 ..     334     443 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.6e-05
      AAA_18   2 lltGtpGvGKttlakeLskrl.gfgvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghlaeleseaakd 93 
                 l+ G+ G+GKtt+ + + ++l ++     ++++ +g l ++d  al+e  r     +d+  da++ +s a + ++ l + +h++e+ ++ + d
  KKY24117.1 335 LIIGPRGSGKTTMIESVVSELmESQKDDFHIVRLSGFLQTDDRLALREIWRQLGREMDVEDDANKVSSYADTMASLLALLSHPEEHSDTLDAD 427
                 699**************7777566555555566666555555556666666666666666666666555666678888888888888777665 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.9e-05     0.035      15      60 ..     304     352 ..     294     360 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.9e-05
                   --TTEEEEEEETTS-EEEEEGGGS-....SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  15 ssqlpvalgkeisgnplvldlkkma...shllvaGatgsGKStalntLi 60 
                   + ++ +al +e     +v+++ + a   + +l++G  gsGK+t++ + +
    KKY24117.1 304 RRTALIALDEEYKKVQHVAQQTVEAgegNSMLIIGPRGSGKTTMIESVV 352
                   56678899999999999****99999*999*************998866 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00039      0.23       3      23 ..     335     355 ..     334     370 .. 0.83
   2 ?   -1.6   0.0       4.7   2.8e+03      72      97 ..     364     389 ..     355     409 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00039
      AAA_33   3 llvGlpGsGKstlaerllkkl 23 
                 l++G+ GsGK+t +e+++ +l
  KKY24117.1 335 LIIGPRGSGKTTMIESVVSEL 355
                 789*************99876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4.7
      AAA_33  72 nvildatnlsrrerarflklarrlgv 97 
                 +++  +++l+ ++r ++++++r+lg 
  KKY24117.1 364 HIVRLSGFLQTDDRLALREIWRQLGR 389
                 55556789999999888888888874 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00018      0.11       2      27 ..     334     359 ..     333     377 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00018
                 EEEE--TTSSHHHHHHHHHHHH...G CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssg 27 
                 ++i Gp G+GKtT+++ v+++l +s+
  KKY24117.1 334 MLIIGPRGSGKTTMIESVVSELMESQ 359
                 5789*****************98875 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00014     0.084      16      57 ..     323     364 ..     313     381 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00014
                 EEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  16 ktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklr 57 
                 ++++   + +   i+Gp GSGK+ +++++   L e+++  + 
  KKY24117.1 323 QQTVEAGEGNSMLIIGPRGSGKTTMIESVVSELMESQKDDFH 364
                 5666667778889***************98777666665555 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       3.9   2.3e+03      73     117 ..     242     287 ..     233     328 .. 0.61
   2 ?   10.5   0.0   0.00055      0.33       3      22 ..     334     356 ..     332     367 .. 0.78
   3 ?   -1.3   0.0       2.4   1.4e+03     103     124 ..     421     442 ..     412     489 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.9
                 HHHHHHHHTT-SEEEEEECTTTTHHHH.HTTSHHHHHCCCECEEEE CS
        cobW  73 lealeereerldviliEttGlaePapv.afteeelksdltldavva 117
                 le+l e  ++l+ + +E   l++Pap+  + e+++ ++   d +v 
  KKY24117.1 242 LEDLSEVTANLEELPVEEPELLDPAPIvEIAEPSIVREDVDDETVD 287
                 5566666677777778888888888883333555555544444444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00055
                 EEEEESTTCCHHHHHHHHH...C CS
        cobW   3 tvltGflGsGKTtLlnhll...e 22 
                 +++ G+ GsGKTt++++++    
  KKY24117.1 334 MLIIGPRGSGKTTMIESVVselM 356
                 5789*************995431 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 2.4
                 SHHHHHCCCECEEEEEEETTTH CS
        cobW 103 eeelksdltldavvavvDaknl 124
                 +++l +d+t +++++++D   l
  KKY24117.1 421 SDTLDADVTTKSIIFIIDEFDL 442
                 5677888999999999997655 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00017       0.1      19      53 ..     327     362 ..     313     378 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00017
  Mg_chelatase  19 aaG.gHnlllvGppGsGKtmlakrlpsllpplseee 53 
                    aG g ++l++Gp GsGKt +++ + s l + ++++
    KKY24117.1 327 EAGeGNSMLIIGPRGSGKTTMIESVVSELMESQKDD 362
                   3441567999********999988877776666555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00037      0.22       2      40 ..     334     376 ..     333     489 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00037
                 EEEE--SSSSHHHHHHHGGGGB....S--EEEEE--TT--HHH CS
       AAA_5   2 vlLvGppGtgKselaerlaaal....nreveyvqltrdtteed 40 
                 +l++Gp G+gK++++e++ + l    ++ +++v l+ +++++d
  KKY24117.1 334 MLIIGPRGSGKTTMIESVVSELmesqKDDFHIVRLSGFLQTDD 376
                 79*************9986666588888888888887777776 PP

>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00013     0.078      10     108 ..     270     379 ..     268     422 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
  AFG1_ATPase  10 elqrgeivadaaqaeavealdrlteelaaqdlarks.......salgklfgrkrksvep..vrglYlwGgvGrGKtylmdlffeslpvekkrrvhfha 98 
                  e+++++iv++++ +e v+a d +++ + a+ + r++       + ++k+    +++ve+  ++++ + G+ G GKt ++++  ++l   +k + h+ +
   KKY24117.1 270 EIAEPSIVREDVDDETVDAFDIIQKLVLAKLSGRRRtalialdEEYKKVQHVAQQTVEAgeGNSMLIIGPRGSGKTTMIESVVSELMESQKDDFHIVR 367
                  578899999************9999877777777766777776445554444445555511567999****************************987 PP

  AFG1_ATPase  99 f..marvhdelt 108
                     ++++ d+l 
   KKY24117.1 368 LsgFLQTDDRLA 379
                  522455555555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00057      0.34       2      27 ..     335     360 ..     334     370 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00057
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklk 27 
                   ++ Gp+g GK+t++++++++l+++ k
    KKY24117.1 335 LIIGPRGSGKTTMIESVVSELMESQK 360
                   689*****************996654 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.7       2.5   1.5e+03      79     107 ..     174     197 ..      38     327 .. 0.63
   2 ?   12.7   0.1   0.00023      0.14      19      38 ..     331     350 ..     314     355 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 2.5
      AAA_23  79 fenkdgrytrsiererelskkkgkttkka 107
                 f++++g      + +r+ ++k +++  ++
  KKY24117.1 174 FKDING-----SSKKRQARRKATDNLEEE 197
                 333333.....112222222222222111 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00023
      AAA_23  19 kgltlItGpNGaGKTTildA 38 
                  +  lI+Gp G+GKTT ++ 
  KKY24117.1 331 GNSMLIIGPRGSGKTTMIES 350
                 4778*************996 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.13        79      15      37 ..     332     354 ..     318     364 .. 0.77
   2 ?    6.2   0.0      0.01       6.2      81     133 ..     429     483 ..     427     512 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.13
                 EEEEEEESTTSSHHHHHHHHHHS CS
         Arf  15 lrilllGLDnaGKtTilkklkle 37 
                   +l++G  ++GKtT+++ + +e
  KKY24117.1 332 NSMLIIGPRGSGKTTMIESVVSE 354
                 5699************9987665 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.01
                 TESEEEEEEETT-CTTHHHHHHHHHHHCTSGCCTTSEEEEEE..E-TTSTTSS-H CS
         Arf  81 ktdavifvvDsadreRleeakeeLkalleeeelkevallvla..NKqDlpealse 133
                 +t+++if++D  d    +  ++ L +l++  + +++++ v++   K D++e l++
  KKY24117.1 429 TTKSIIFIIDEFDLFATHPRQTLLYNLFDIAQSRKAPIAVFGlsTKVDVAEHLEK 483
                 5899*********************************999853379999887765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.58   3.5e+02      30      63 ..      43      74 ..      32     121 .. 0.72
   2 ?    1.5   0.0       0.5     3e+02      46     100 ..     170     217 ..     133     240 .. 0.59
   3 ?    4.8   0.0     0.047        28       2      27 ..     334     359 ..     333     371 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.58
                TTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHH CS
    MMR_HSR1 30 pgtTrdinegrvklkgkeielvDtpGliegasee 63
                +gtT+  ++g  +   ++   vDt+G +++++e+
  KKY24117.1 43 NGTTKRLRQGDPA--YQNGDAVDTVGEVSKEEEG 74
                6999999999887..556789*****55433332 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.5
                 EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT..TTCSHHHHHHHHHH CS
    MMR_HSR1  46 keielvDtpGliegaseekglgkaflaleeadlillvvdas..eeklkpldeeleel 100
                 k++ + D+ G    +s++++ +++  ++ e ++il +v a+  e     +  ++ + 
  KKY24117.1 170 KDLGFKDING----SSKKRQARRKATDNLEEEAILPLVTARieE-----DTVQISDA 217
                 3445555555....445666666666677779999999876431.....33333333 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.047
                 EEEEESTTSSHHHHHHHHHTSTEEES CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivs 27 
                 ++i+G   +GK+t+i + + e  + +
  KKY24117.1 334 MLIIGPRGSGKTTMIESVVSELMESQ 359
                 579*************9998855544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.47
# Mc/sec: 3459.13
//
Query:       KKY24118.1  [L=198]
Description: hypothetical protein UCRPC4_g02584 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00059   19.6   0.0     0.0016   18.3   0.0    1.7  1  COX14     Cytochrome oxidase c assembly
  ------ inclusion threshold ------
      0.084   12.9   0.1        5.4    7.1   0.1    2.2  2  DUF3316   Protein of unknown function (DUF3316)


Domain annotation for each model (and alignments):
>> COX14  Cytochrome oxidase c assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.7e-07    0.0016      26      56 ..      11      41 ..      10      44 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.7e-07
       COX14 26 lyaggllvytvysygkynrkqkaelierekl 56
                ++aggl+ y+ +s++++ r+q++++i+re+ 
  KKY24118.1 11 VVAGGLALYSGVSLIRHHRRQRRAWIDRELE 41
                89**************************986 PP

>> DUF3316  Protein of unknown function (DUF3316)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1   0.00061       5.4      31      72 ..      40      81 ..      30      90 .. 0.85
   2 ?    4.5   0.0    0.0037        33      32      61 ..      88     117 ..      79     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00061
     DUF3316 31 aeryitrataygaGltnlldtylspseylgpelrilsetmrs 72
                 er    +ta+  G ++ ++++l  +e  g el+i +e+ r+
  KKY24118.1 40 LERLRDAQTAFLRGEATAEQLHLLEQERAGEELKIQHEEERR 81
                56777789*****************************95543 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0037
     DUF3316  32 eryitrataygaGltnlldtylspseylgp 61 
                  + +t+ ++y +G   +++t+ls  e+l+ 
  KKY24118.1  88 LWGKTKRALYSLGGVDVDETELSIGEKLRE 117
                 456799*****************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       861  (0.0480228); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1269.78
//
Query:       KKY24119.1  [L=1317]
Description: putative phospho-2-dehydro-3-deoxyheptonate aldolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-98  329.5   0.1    1.6e-98  329.0   0.1    1.2  1  DAHP_synth_1  DAHP synthetase I family
    1.5e-11   44.3   0.2    3.4e-11   43.2   0.2    1.6  1  PAP_assoc     Cid1 family poly A polymerase
    9.2e-10   38.7   0.0    2.6e-09   37.3   0.0    1.8  1  NTP_transf_2  Nucleotidyltransferase domain
  ------ inclusion threshold ------
      0.023   13.7   0.0      0.044   12.7   0.0    1.3  1  PAP_central   Poly(A) polymerase central domain


Domain annotation for each model (and alignments):
>> DAHP_synth_1  DAHP synthetase I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.0   0.1  3.5e-102   1.6e-98       8     274 ..      51     349 ..      36     350 .. 0.97

  Alignments for each domain:
  == domain 1  score: 329.0 bits;  conditional E-value: 3.5e-102
                   HHHCCCTTTCSEEEEEEESC-S-HHHHHHHHHHHHHHHHHHTTTEEEEEESSSC-S.SSTTS-SHTTHHHTHHHHHHHHHHH.............T- CS
  DAHP_synth_1   8 aadiliGkddrllviaGPCsiedpeaaleyAerlkklgeklkddleiimrayfeKpRrstvgfkGlindpdlkilsrikkel.............gl 91 
                   aa i++ +ddrllv++GPCsi+dp +aley++rl  l++kl++dl iimray+eKp r+tvg+kGlindpd++++++i+k+l             g+
    KKY24119.1  51 AAAIIHQRDDRLLVMVGPCSIHDPATALEYCQRLLDLSKKLSNDLCIIMRAYLEKP-RTTVGWKGLINDPDIDETYKINKGLrvsrqmyadltsmGM 146
                   4789999*************************************************.9*************************************** PP

                   EEEEEESSCCTHHHHHHHESEEEE-CTCTTBHHHHHHHHTTSSEEEEEE-TT....HHHHHHHHHHHHHHHTTE.........EE--EEEEEEEEEE CS
  DAHP_synth_1  92 piatevldpisvqyladvvdiiqiGArttesqdllelasglskpvglKngtd....vaidemkaaaekilflgv.........etkgiilcerglrg 175
                   pia+e+ld+is+q+lad++++++iGArttesq ++elasgls+p+g+Kngtd    va+d++ +aa+k++f+gv         +t+g+ +++++lrg
    KKY24119.1 147 PIASEMLDTISPQFLADMISLGAIGARTTESQLHRELASGLSFPIGFKNGTDgslsVAVDAVGSAAAKHHFMGVtkqglaaitRTSGNLDGFVILRG 243
                   ************************************************************************************************* PP

                   ST.SSSSSCHCHHHHHHHHHHCTSS.-EEEESCHHHTTCGGGGHHHHHHHHHHHHHTT...ESEEEEEBBSSCCC-SST..GGGGBBCTCBHHHHHH CS
  DAHP_synth_1 176 gk.ktnrdvedvaavkilkeetgkl.pvmvDvsHansrkdykrqkkvlklakaaiaaG...iaGvmiEshlnpgkalsd..gkqalkygksetdaci 265
                   g  +tn+d+e+v+++k++++++g+   +m+D+sH+ns+kd+++q+ v++++ +++++G   i  vmiEs++n+g+++++  g+  lk g+s+tdaci
    KKY24119.1 244 GSkGTNYDAESVQSAKEALRKKGQKeVLMIDCSHGNSKKDHRNQPGVAQTIGDQLRNGedgIVAVMIESNINEGNQKVPdeGPAGLKKGVSITDACI 340
                   **9**************99999888789******************************999*****************9999*************** PP

                   HHHHHHHHH CS
  DAHP_synth_1 266 lkeltelll 274
                   ++e+t ++l
    KKY24119.1 341 GWETTIEVL 349
                   ****98876 PP

>> PAP_assoc  Cid1 family poly A polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.2   7.6e-15   3.4e-11       1      62 []     847     906 ..     847     906 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 7.6e-15
                 -HHHHHHHHHHHHHHT--TTTEEEECSST-EEEHHHHCGCS-SSEECESSSSEBEETTCCCC CS
   PAP_assoc   1 sLGeLLigFFeyYgreFdyenvvisirtggiltkkekgwesaeskernrfllaIeDPfeldn 62 
                 +LG LL++FF++Yg+ F+ e+v+i++ ++g++ k++++      ++++r +l+I DP+ +dn
  KKY24119.1 847 NLGRLLVEFFNLYGNVFNKEEVGIRMEPPGYFEKRSYKPFV--YQQNKRERLSIIDPNRPDN 906
                 8**************************************95..8889***********9998 PP

>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   5.7e-13   2.6e-09       1      77 [.     672     779 ..     672     809 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 5.7e-13
                   HHHHHHHHHHHTTTSEEEEEHHHHCTTSCTTSSEEEEEEESTTCHHH...............................HHHEHHHHHHHHCCCEEEC CS
  NTP_transf_2   1 lkklleelkelepvakvvlfGSyarGtalkgSDiDllvvlpeevsre...............................kkeegleklaeiikfleel 66 
                   +++l++ l+++ep+ ++++fGS+a G++l++ D+Dl++++ ++v                                  +   + +++++ ikf++++
    KKY24119.1 672 IARLAKVLRRMEPGSELHAFGSFAAGLYLPTGDMDLVLYSADFVRAKrsgrpyfpakrkhtwyfnfartlerlgipagPPLAIPRAKVPLIKFVDKV 768
                   67999**************************************97779******************************77777799*********** PP

                   TTEEEEEECEE CS
  NTP_transf_2  67 lglevdlvtre 77 
                    g++vdl++ +
    KKY24119.1 769 SGIKVDLSFDN 779
                   *******9544 PP

>> PAP_central  Poly(A) polymerase central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.9e-06     0.044     110     206 ..     805     905 ..     798     925 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.9e-06
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PAP_central 110 aiklWAkrraiysnvlgflgGvawAllvariCqlyPnaaa....stlvskfFlvlskWkwpqpvlLkeieekeeplrvWdpkvnksdrahlmpiitpa 203
                  +ik   + r++  n+ g lgG +   lv+   q+ P+         l+ +fF+++ +   ++ v ++       + r ++p v+++++ +++ ii p 
   KKY24119.1 805 IIKQFLMIRGLNDNAAGGLGGFSTICLVTSLIQMLPRDPGtpnlGRLLVEFFNLYGNVFNKEEVGIRMEPPGYFEKRSYKPFVYQQNKRERLSIIDPN 902
                  688888999***************************974311225799**********9999999987766443478********************9 PP

                  xxx RF
  PAP_central 204 yps 206
                   p 
   KKY24119.1 903 RPD 905
                  886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.49
# Mc/sec: 8028.00
//
Query:       KKY24120.1  [L=2464]
Description: putative phosphatidylinositol 3-kinase tor2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.4e-123  411.3   3.7   7.7e-123  410.1   3.7    1.6  1  FAT             FAT domain
    7.9e-72  242.1   0.1    1.6e-71  241.0   0.1    1.6  1  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
    4.3e-59  199.0  12.0    5.9e-59  198.6   1.7    5.1  6  DUF3385         Domain of unknown function (DUF3385)
    7.6e-42  141.7   0.2    7.4e-41  138.6   0.0    2.8  2  FRB_dom         FKBP12-rapamycin binding domain
    1.3e-23   83.2  14.6    2.3e-05   24.7   0.0    9.6  8  HEAT_2          HEAT repeats
    1.4e-16   60.5  11.6      0.032   14.7   0.1   10.5  9  HEAT_EZ         HEAT-like repeat
    1.7e-16   58.9  19.5      0.039   14.2   0.1   12.9 12  HEAT            HEAT repeat
    5.3e-14   51.7   3.7    1.1e-13   50.8   0.3    2.9  2  FATC            FATC domain
    1.6e-10   41.3   0.4       0.36   10.8   0.0    7.1  7  Cnd1            non-SMC mitotic condensation complex subunit 
    6.3e-09   34.9  12.8     0.0065   15.1   0.0    6.7  4  Adaptin_N       Adaptin N terminal region
      8e-08   32.1   8.7       0.28   11.1   0.0    8.0  8  UME             UME (NUC010) domain
    2.6e-05   23.5   1.7         21    4.1   0.0    5.8  6  IFRD            Interferon-related developmental regulator (I
    0.00085   19.8   2.4        1.8    9.1   0.1    5.3  4  TPR_19          Tetratricopeptide repeat
     0.0033   16.6  14.3      0.027   13.6   0.0    6.1  8  MMS19_C         RNAPII transcription regulator C-terminal
     0.0042   16.7   2.1        4.1    6.9   0.0    4.0  4  Tti2            Tti2 family
     0.0046   17.5   1.9    1.1e+02    3.5   0.0    6.8  7  Vac14_Fab1_bd   Vacuolar 14 Fab1-binding region
     0.0076   16.3   0.1        6.4    7.0   0.0    4.7  2  Arm             Armadillo/beta-catenin-like repeat
  ------ inclusion threshold ------
      0.029   14.6   0.3         49    4.3   0.1    4.0  3  ANAPC3          Anaphase-promoting complex, cyclosome, subuni
      0.045   13.9   3.3         52    4.1   0.1    5.6  5  RTP1_C1         Required for nuclear transport of RNA pol II 
       0.11   13.4   0.5          9    7.4   0.3    4.2  2  TPR_14          Tetratricopeptide repeat
        3.1    7.3   7.0        8.7    5.8   7.0    1.7  1  DUF3678         Protein of unknown function (DUF3678)


Domain annotation for each model (and alignments):
>> FAT  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  410.1   3.7  9.1e-126  7.7e-123       1     346 []    1370    1743 ..    1370    1743 .. 0.94

  Alignments for each domain:
  == domain 1  score: 410.1 bits;  conditional E-value: 9.1e-126
                  CCCTTCCCCTSSSGHHCCCCT....TSSSS--CCCHCCCCHH--CCHCHHCCCHCCCCCCCCCTS---SCCCCCHHHHHCCCCCHHHCHHCCHHCSS CS
         FAT    1 aplaaeaaWrlgqWdsmeeylsvlkkdspdkaffeailalhrnqfdeakeliekarqlldtelsalvgesynraygvlvrvQmlaEleeiiqykqkl 97  
                  a laa aaW+ g+W+sm+eyl v+kk+spd+aff+ailalhrnqfd+a+++i+++r++l telsa  gesynrayg++vrvQmlaElee++ yk++ 
  KKY24120.1 1370 AALAASAAWGRGKWESMDEYLMVMKKESPDRAFFGAILALHRNQFDAAAQFIDQTREGLETELSAVIGESYNRAYGTVVRVQMLAELEEVAIYKKSA 1466
                  579********************************************************************************************99 PP

                  ----TTTTTTT----TTS-TTTGCCCTTTCCCCTCCCHCCCHCHCCS-STTCCCCCCCCHCHHHHCCSTTHHCCCCCHCTT.....TT.TSSCCCHH CS
         FAT   98 ssseklksllktWrkRlpgcqdnvevwqdiltvRslvlspiedllkgvkaemwlkfanlarksgrlslAekaLkelleedpeewlprappevvyayl 194 
                   ++ek+++l++tW++Rl+gcq+nvevwq++l++R+lv+sp+e+      +emw+kfanl+rksgr++lAe+++++l  ++  + + ++ppev+ya+l
  KKY24120.1 1467 LEPEKQAQLRETWNRRLLGCQRNVEVWQRMLKLRALVVSPREN------LEMWIKFANLCRKSGRPGLAERSITSLSNVAR-DAQGNTPPEVIYAHL 1556
                  9******************************************......***************************77666.77779********** PP

                  HHHHHCCHHHHHSSCCHHHHCCTSSCCC..SS-SS---.....................................HHHHCCCTCCCCCCCCCCCT.S CS
         FAT  195 KylwssgeqkealqkLreftsellekke..elqsgleaq.........................keptnleeftkllarcylkkGewqealqkldws 264 
                  Ky+ws ++++ al++Lr+ft+ l ++ +  e+q +++ q                         +  + ++++ klla+cylk+Gewq+ lq++dw+
  KKY24120.1 1557 KYSWSAENKHVALSHLRDFTTDLEQEFRqrEAQLAHMSQsngdringvgsgladlgasdaqeprRRLSDIAKYPKLLAKCYLKQGEWQATLQRGDWR 1653
                  **********************999977776666666667888899999999999999**999999999**************************** PP

                  .......-SSCCHHHHCCHHCTCCCHSTTCCCCHHHHHCCHHHHHHSSSS....S-TCC.HHHHCCT..CCHHHHTTTSSTTTCHHHHHC CS
         FAT  265 eek....ieeilqsysaateidpswykawhtwalfnfevvskeeeqkeeee...pedlq.eyvvpavkgflksislssenslqdtlRLLt 346 
                  +e+    + +il+sy+ ate++  +yk wh+wal+nfevv + ++++++e+   pe +  ++vvpav+gf++si+ls++++lqdtlRLLt
  KKY24120.1 1654 SEEvregVAQILHSYKMATEHNEVSYKGWHAWALANFEVVMASSSSADRESatvPEPVVnDHVVPAVRGFFRSIALSQKSALQDTLRLLT 1743
                  98832334569********************************99988777888888888*****************************8 PP

>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.0   0.1   1.9e-74   1.6e-71       2     249 ..    2017    2265 ..    2016    2266 .. 0.98

  Alignments for each domain:
  == domain 1  score: 241.0 bits;  conditional E-value: 1.9e-74
                      EEEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHH.HHHHCH CS
  PI3_PI4_kinase    2 sagiykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasves.lrvald 93  
                      + +++k+++d rqde+++q+f+l++++ls+++++ +r+l+++++ +ipl++++g++++v++s+t+++l++e++e +++  ++++++ l++a+d
      KKY24120.1 2017 YTYALKGHEDIRQDERVMQLFGLVNTLLSGDSECFKRHLNIQRFPAIPLSQNSGLLGWVPNSDTLHNLIKEYRESRRILLNIEHRImLQMAPD 2109
                      56789***********************************************************************99999999999999*** PP

                      CHCCHHHHHCC.HHHHHHTSSTTHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCCTCSHC CS
  PI3_PI4_kinase   94 kkklkkekklk.fekrtalkpksgllqeFvkkspsaeewlearkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGlilpdewk 185 
                      +++l++++k++ f   + +++ ++l++ ++ ks+s e wle+r++++rsl ++s+++yilg+gDRh++N+++d+ +g++ihIDfG++++ +++
      KKY24120.1 2110 YDNLTLMQKVEvFGYAMDNTTGKDLYRVLWLKSKSSESWLERRTNYTRSLGVMSMVGYILGLGDRHPSNLMLDRVTGNIIHIDFGDCFEIAMH 2202
                      ***********9999****************************************************************************** PP

                      SSSS-.SSSSSS-THHHHHHTSTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCSSC CS
  PI3_PI4_kinase  186 llpfpqekvPfrltrelvlaidpskdeglfresceealealrrdqnlltrllkkavkdglilwe 249 
                      + ++p e+vPfrltr+l +a++ s  eg fr +ce++++++r++++ l+++l+++++d+l +w+
      KKY24120.1 2203 REKYP-ERVPFRLTRMLTFAMEVSNIEGSFRITCENVMRVIRENKESLMAVLEAFIHDPLLNWR 2265
                      *****.********************************************************97 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.8   2.4e+03      66     129 ..     277     345 ..     233     362 .. 0.54
   2 ?    2.6   0.0      0.13   1.1e+02      86     156 ..     657     726 ..     584     728 .. 0.75
   3 !  198.6   1.7   6.9e-62   5.9e-59       1     161 []     733     893 ..     733     893 .. 0.97
   4 ?   -2.7   0.0       5.7   4.8e+03     102     139 ..     916     953 ..     903     968 .. 0.79
   5 ?   -1.1   0.0       1.8   1.5e+03     111     160 ..     965    1015 ..     962    1018 .. 0.77
   6 ?   -1.5   0.1       2.4     2e+03      78     129 ..    1015    1067 ..     985    1073 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.8
     DUF3385  66 tdlsllmvglspsneeyypt.vvinaLlril..kdpsls..shhaavveaimnifktlglkcvpfLdqi 129
                 +++ + ++++ p   +y +  +v n L++ +   ++sl+  + ++ +  ai +i   +g+ + ++Ld i
  KKY24120.1 277 PKIRAQVTQTIPVLADYHAVeFVNNYLHKFMiyLQSSLKreKDRNVAFIAIGKIALAVGSAMAQYLDGI 345
                 333333334444444444432222333222222334444212222333444555555555555555555 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.13
     DUF3385  86 vvinaLlrilkdpslsshhaavveaimnifktlglkcvpfLdqiipallsvirtteesnlrefllqqLatL 156
                  +++aLl    dp+ s   a++++a+  + +  g +    +++++p ll ++++  +   re  l+ +++L
  KKY24120.1 657 PMVSALLPKATDPN-SGVSATIIRALGEMATVGGEEIKAHIPKLMPILLDALQDLGSPAKREAALKTISQL 726
                 45666666666776.45778889999998888888889999999999999999998888888888888777 PP

  == domain 3  score: 198.6 bits;  conditional E-value: 6.9e-62
     DUF3385   1 VvdPyleypqLLelLlnilkteqsqsirrevikllGilGALDPykhkqveeraedkkrreeaaretdlsllmvglspsneeyyptvvinaLl.rilkdp 98 
                 Vv+Py +ypqLL++L+ni+k e ++ ++re+ikl+GilGALDPy  + ++e+++d++  +e+++ +d++l+m+gl+psn+eyyptvvin+Ll +ilkd+
  KKY24120.1 733 VVKPYKDYPQLLSTLVNIIKHEPHEYLKREAIKLMGILGALDPYEAQLISEKDKDQHPVAEQQEVSDVTLIMQGLTPSNDEYYPTVVINTLLnTILKDN 831
                 9**************************************************99999888888899**************************9679**** PP

     DUF3385  99 slsshhaavveaimnifktlglkcvpfLdqiipallsvirtteesnlrefllqqLatLvsivk 161
                 sl ++h+av++ai++ifktlglkcvpfL+qiipa+l+vir+++  ++++++++qL++Lvsivk
  KKY24120.1 832 SLVQYHSAVIDAIVTIFKTLGLKCVPFLHQIIPAFLTVIRSSSV-SHLDSYFNQLSILVSIVK 893
                 ****************************************9887.9****************7 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 5.7
     DUF3385 102 shhaavveaimnifktlglkcvpfLdqiipallsvirt 139
                 + ++++++ + +i ++l+ +  + L  ++p +ls++++
  KKY24120.1 916 QVQSTILSLVESIARSLEGEFKKNLADLLPLMLSLMER 953
                 55667777888999999999999999999999999875 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 1.8
     DUF3385  111 imnifktlglkcvpfLdqiipallsvirtte.esnlrefllqqLatLvsiv 160 
                  i++ f   g +  ++++ i+pa++++ +tt+ + ++r+  ++ L++L ++v
  KKY24120.1  965 ILHTFLVFGNGGEEYMHLIVPAIVRLFETTSaPISVRKNAIETLSKLSRLV 1015
                  556666667777789999*******99976636788999999888887776 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 2.4
     DUF3385   78 sneeyyptvvinaLlrilkdpsls.shhaavveaimnifktlglkcvpfLdqi 129 
                   n   y++++i+ L++i+  p  + + ++a+++ ++  + +lg   + f++ +
  KKY24120.1 1015 VNVSDYASMIIHPLAKIMGSPINDiQLRQAALDCVVALIFQLGQDFIHFIPLV 1067
                  44445777789999999988877777777788877766666888888888766 PP

>> FRB_dom  FKBP12-rapamycin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       3.5     3e+03      10      76 ..    1303    1322 ..    1275    1334 .. 0.65
   2 !  138.6   0.0   8.7e-44   7.4e-41       1      98 [.    1850    1947 ..    1850    1948 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.5
     FRB_dom   10 hElwhegLeeAsrlyfgeknveamlklleplhellekgpetlreasFaqafgreLkeaeewlkkykk 76  
                   E+w+e L                                               ++ ee+l  y+ 
  KKY24120.1 1303 REAWYEKL-----------------------------------------------ERWEEALAAYNA 1322
                  45555555...............................................555555555443 PP

  == domain 2  score: 138.6 bits;  conditional E-value: 8.7e-44
     FRB_dom    1 ELiRvAilwhElwhegLeeAsrlyfgeknveamlklleplhellekgpetlreasFaqafgreLkeaeewlkkykkteneedlnqawdiyyevfrri 97  
                  ELiRvA+lwhElwhegLeeAsrlyfg++nve+m+++l plh++l++g+etlre+sFaqafg++L ea+++++ yk+t++  dlnqawd+yy vfr+i
  KKY24120.1 1850 ELIRVAVLWHELWHEGLEEASRLYFGDHNVEGMFATLAPLHDMLDRGAETLREVSFAQAFGHDLAEARHFCNIYKQTQEVGDLNQAWDLYYGVFRKI 1946
                  9***********************************************************************************************9 PP

     FRB_dom   98 k 98  
                   
  KKY24120.1 1947 A 1947
                  6 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   2.7   4.1e-05     0.035      33      87 ..      96     160 ..      64     161 .. 0.79
   2 !    8.9   0.5    0.0022       1.9       2      57 ..     138     203 ..     137     215 .. 0.77
   3 ?   -1.5   0.0         4   3.4e+03      37      54 ..     269     286 ..     262     327 .. 0.60
   4 ?    2.1   0.0       0.3   2.5e+02      19      54 ..     472     513 ..     463     524 .. 0.68
   5 !   17.9   0.0   3.7e-06    0.0031       2      71 ..     540     617 ..     539     619 .. 0.85
   6 !   24.7   0.0   2.7e-08   2.3e-05       2      86 ..     660     766 ..     659     768 .. 0.84
   7 ?    5.2   0.0     0.032        27      32      59 ..     983    1012 ..     975    1049 .. 0.68
   8 !   11.2   0.0   0.00044      0.38      13      64 ..    1751    1807 ..    1741    1826 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.1e-05
      HEAT_2  33 lpaLvellededpavRraaaeaLgaig..........dpealpaLkellddddddvvReaAaeaL 87 
                    L+++l++ dp v +aaa++Lg+++           ++ ++a +e+l +d+ + +R aA+  +
  KKY24120.1  96 AGFLRQALRSNDPTVLAAAAKSLGRLArpggaltaelVEAEIQAALEWLSSDRQESRRLAAVLVI 160
                 56799999999999999999999999633344443332668999999999999999999998765 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0022
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp..........ealpaLvellededpavRraaaeaLga 57 
                 +a l+ l++d  +  r aa+ ++ +++            ++++++  +l+d++p +R++aaea +a
  KKY24120.1 138 QAALEWLSSDRQESRRLAAVLVIRELARNsptllygfvpQIFELIWVALRDPKPIIRETAAEAVSA 203
                 67899999999999999*******6644323566655555566666666**************987 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 4
      HEAT_2  37 vellededpavRraaaea 54 
                 ++l ++ dp +R+++ ++
  KKY24120.1 269 LRLKDHRDPKIRAQVTQT 286
                 444444445555444443 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.3
      HEAT_2  19 aairaLgrignp......ealpaLvellededpavRraaaea 54 
                  a+++Lg+++ +       +++   +++++++p++R+aaa +
  KKY24120.1 472 LALHTLGSFDFQghflneFVRDVTARYVDNKNPEIRKAAALT 513
                 577777755444333331445555567788999999999865 PP

  == domain 5  score: 17.9 bits;  conditional E-value: 3.7e-06
      HEAT_2   2 daLlqalendpdpevrraairaLg.....rignpealpaLvellededpavRraaaeaLgaigd..pe.alpaLkell 71 
                 d+Ll + + d+d ++r +++++L       +g pe +++L+ +++de  avR+aa+  +g++    p+ + p L++ll
  KKY24120.1 540 DKLLTIGVGDEDADIRCKILQSLDskfdrHLGRPENIRCLFLAVNDEVFAVREAAICIIGRLSAtnPAyVFPPLRKLL 617
                 778888889***************999977899***********************9999886322443567777776 PP

  == domain 6  score: 24.7 bits;  conditional E-value: 2.7e-08
      HEAT_2   2 daLlqalendpdpevrraairaLg..........rignpealpaLvelled.edpavRraaaeaLgai...........gd.pealpaLkelldddddd 77 
                 +aLl  + +dp+  v +++iraLg          + + p+++p+L+++l+d  +pa R+aa ++++++           +d p+ l+ L  + ++++++
  KKY24120.1 660 SALLPKA-TDPNSGVSATIIRALGematvggeeiKAHIPKLMPILLDALQDlGSPAKREAALKTISQLalnsgyvvkpyKDyPQLLSTLVNIIKHEPHE 757
                 6889999.9***************88777777555566799********9989*************995555444444423599*************** PP

      HEAT_2  78 vvReaAaea 86 
                 + +++A++ 
  KKY24120.1 758 YLKREAIKL 766
                 *****9986 PP

  == domain 7  score: 5.2 bits;  conditional E-value: 0.032
      HEAT_2   32 alpaLvelleded.p.avRraaaeaLgaig 59  
                  ++pa+v+l e+++ p  vR++a+e+L+++ 
  KKY24120.1  983 IVPAIVRLFETTSaPiSVRKNAIETLSKLS 1012
                  58999**9966553558**********985 PP

  == domain 8  score: 11.2 bits;  conditional E-value: 0.00044
      HEAT_2   13 dpevrraairaLg..rignp.ealpaLvellededpavRraaaeaLgaig..dpeal 64  
                  ++ev r++ + L   +i++  e++p L+  ++ ++p vR+a+ + L+++g  +p+al
  KKY24120.1 1751 HDEVNRTITEGLPsvSIDTWlEVIPQLIARINQHNPKVRQAVHHLLAQVGkkHPQAL 1807
                  677888888888844445536999*************************94435553 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1      0.01       8.9      31      55 .]      97     121 ..      92     121 .. 0.90
   2 !   13.2   0.1   0.00012     0.099       4      53 ..     153     202 ..     151     203 .. 0.94
   3 ?   -2.3   0.0       7.9   6.8e+03      39      50 ..     501     512 ..     487     514 .. 0.68
   4 ?    3.4   0.1      0.14   1.2e+02       2      34 ..     589     621 ..     588     628 .. 0.79
   5 !    9.4   0.0    0.0018       1.5      16      55 .]     645     684 ..     630     684 .. 0.84
   6 !   14.7   0.1   3.7e-05     0.032       8      55 .]     678     726 ..     675     726 .. 0.92
   7 !   10.8   0.0   0.00065      0.55      11      55 .]     972    1011 ..     969    1011 .. 0.84
   8 ?   -2.4   0.0       8.7   7.5e+03      22      43 ..    1213    1234 ..    1210    1235 .. 0.86
   9 ?    4.3   0.0     0.068        58      28      52 ..    1772    1796 ..    1771    1799 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.01
     HEAT_EZ  31 paLlalLnddsdeVRaaAagaLgnl 55 
                  +L ++L++ +++V aaAa  Lg+l
  KKY24120.1  97 GFLRQALRSNDPTVLAAAAKSLGRL 121
                 68999******************97 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.00012
     HEAT_EZ   4 RraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 R aA++++ +la + p ll ++vp+i  +   +L+d+++ +R++Aa a +
  KKY24120.1 153 RLAAVLVIRELARNSPTLLYGFVPQIFELIWVALRDPKPIIRETAAEAVS 202
                 789*****77************************************9976 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 7.9
     HEAT_EZ  39 ddsdeVRaaAag 50 
                 ++++e+R+aAa 
  KKY24120.1 501 NKNPEIRKAAAL 512
                 456699999985 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.14
     HEAT_EZ   2 rvRraAawaLGrlaggepellqplvpeilpaLl 34 
                 +vR+aA+  +Grl + +p ++ p + ++l  Ll
  KKY24120.1 589 AVREAAICIIGRLSATNPAYVFPPLRKLLVNLL 621
                 69**********888888887777777766665 PP

  == domain 5  score: 9.4 bits;  conditional E-value: 0.0018
     HEAT_EZ  16 ggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                  ++  l++++v+ ++ aLl+  +d+++ V a+ ++aLg +
  KKY24120.1 645 RNGTKLIRTYVDPMVSALLPKATDPNSGVSATIIRALGEM 684
                 4677899*******************************86 PP

  == domain 6  score: 14.7 bits;  conditional E-value: 3.7e-05
     HEAT_EZ   8 awaLGrlaggepellqplvpeilpaLlalLnddsdeV.RaaAagaLgnl 55 
                 ++aLG++a +++e ++ ++p+++p Ll +L+d  ++  R+aA+ ++++l
  KKY24120.1 678 IRALGEMATVGGEEIKAHIPKLMPILLDALQDLGSPAkREAALKTISQL 726
                 68******************************666666********997 PP

  == domain 7  score: 10.8 bits;  conditional E-value: 0.00065
     HEAT_EZ   11 LGrlaggepellqplvpeilpaLlalLnddsd.eVRaaAagaLgnl 55  
                  +G   +g+ e++++ vp+i++++    +++ + +VR++A+ +L++l
  KKY24120.1  972 FG---NGGEEYMHLIVPAIVRLFE---TTSAPiSVRKNAIETLSKL 1011
                  67...9999****99999999999...444445**********987 PP

  == domain 8  score: -2.4 bits;  conditional E-value: 8.7
     HEAT_EZ   22 lqplvpeilpaLlalLnddsde 43  
                  ++p++ +i+  L+ ++++d+++
  KKY24120.1 1213 IPPEIIQIVLNLAEFMEHDEKS 1234
                  5788999***********9985 PP

  == domain 9  score: 4.3 bits;  conditional E-value: 0.068
     HEAT_EZ   28 eilpaLlalLnddsdeVRaaAagaL 52  
                  e++p+L+a+ n  +++VR+a+ + L
  KKY24120.1 1772 EVIPQLIARINQHNPKVRQAVHHLL 1796
                  79*****************985555 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1    0.0011      0.95       5      28 ..      99     122 ..      96     123 .. 0.91
   2 ?    3.1   0.2      0.18   1.5e+02       6      30 ..     141     166 ..     137     167 .. 0.86
   3 !    9.2   0.0    0.0019       1.6       1      26 [.     178     203 ..     178     207 .. 0.89
   4 ?    2.7   0.0      0.23     2e+02       4      30 ..     267     293 ..     265     294 .. 0.84
   5 ?    6.6   0.0     0.012        11      11      27 ..     501     517 ..     494     518 .. 0.88
   6 ?   -1.6   0.0       5.4   4.6e+03       9      24 ..     547     562 ..     541     563 .. 0.82
   7 ?    2.0   0.1       0.4   3.4e+02       5      21 ..     579     595 ..     576     603 .. 0.79
   8 ?    1.6   0.0      0.53   4.6e+02       4      29 ..     661     686 ..     658     688 .. 0.86
   9 !   14.2   0.1   4.5e-05     0.039       1      28 [.     699     727 ..     699     730 .. 0.95
  10 ?    2.8   0.0      0.21   1.8e+02      15      29 ..     999    1013 ..     983    1015 .. 0.75
  11 ?    1.2   0.0      0.71     6e+02      13      28 ..    1038    1053 ..    1024    1056 .. 0.77
  12 ?    4.5   0.0      0.06        51       1      29 [.    1773    1801 ..    1773    1803 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0011
                 HHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgala 28 
                 l ++l++++p V +aAak+Lg+la
  KKY24120.1  99 LRQALRSNDPTVLAAAAKSLGRLA 122
                 77899*****************98 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.18
                 HHHH.T-SSHHHHHHHHHHHHHHHHC CS
        HEAT   6 lkll.sDpspeVReaAakaLgalaev 30 
                 l++l sD   + R aA++ + +la++
  KKY24120.1 141 LEWLsSDRQESRRLAAVLVIRELARN 166
                 67887999999***********9975 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0019
                 HHHHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLga 26 
                 ++ l++ +l+Dp p +Re+Aa+a+ a
  KKY24120.1 178 IFELIWVALRDPKPIIRETAAEAVSA 203
                 57789999***************986 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.23
                 HHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   4 lllkllsDpspeVReaAakaLgalaev 30 
                 +ll+l  + +p++R+ + +++  la +
  KKY24120.1 267 ILLRLKDHRDPKIRAQVTQTIPVLADY 293
                 57886677*************999876 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.012
                 -SSHHHHHHHHHHHHHH CS
        HEAT  11 DpspeVReaAakaLgal 27 
                  ++pe+R+aAa+++++l
  KKY24120.1 501 NKNPEIRKAAALTCCQL 517
                 58************998 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 5.4
                 HT-SSHHHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAakaL 24 
                   D+++++R+  +++L
  KKY24120.1 547 VGDEDADIRCKILQSL 562
                 58********999887 PP

  == domain 7  score: 2.0 bits;  conditional E-value: 0.4
                 HHHHHT-SSHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAa 21 
                 l  + +D+   VReaA+
  KKY24120.1 579 LFLAVNDEVFAVREAAI 595
                 45557***********7 PP

  == domain 8  score: 1.6 bits;  conditional E-value: 0.53
                 HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgalae 29 
                 +ll   +Dp++ V ++ ++aLg++a 
  KKY24120.1 661 ALLPKATDPNSGVSATIIRALGEMAT 686
                 5677789****************996 PP

  == domain 9  score: 14.2 bits;  conditional E-value: 4.5e-05
                 HHHHHHHHHT-.SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsD.pspeVReaAakaLgala 28 
                 l+P+ll +l+D  sp  ReaA+k++ +la
  KKY24120.1 699 LMPILLDALQDlGSPAKREAALKTISQLA 727
                 8**************************98 PP

  == domain 10  score: 2.8 bits;  conditional E-value: 0.21
                  HHHHHHHHHHHHHHH CS
        HEAT   15 eVReaAakaLgalae 29  
                  +VR++A+++L +l++
  KKY24120.1  999 SVRKNAIETLSKLSR 1013
                  4*********99975 PP

  == domain 11  score: 1.2 bits;  conditional E-value: 0.71
                  SHHHHHHHHHHHHHHH CS
        HEAT   13 speVReaAakaLgala 28  
                  + + R+aA+ +++al+
  KKY24120.1 1038 DIQLRQAALDCVVALI 1053
                  6678*********997 PP

  == domain 12  score: 4.5 bits;  conditional E-value: 0.06
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalae 29  
                  ++P l+  ++  +p+VR+a+   L+++ +
  KKY24120.1 1773 VIPQLIARINQHNPKVRQAVHHLLAQVGK 1801
                  5899***************9888887765 PP

>> FATC  FATC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.3      0.73   6.3e+02      24      31 ..    1678    1685 ..    1677    1685 .. 0.91
   2 !   50.8   0.3   1.2e-16   1.1e-13       2      32 .]    2434    2464 .]    2433    2464 .] 0.97

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.73
        FATC   24 myiGWcPw 31  
                  +y GW +w
  KKY24120.1 1678 SYKGWHAW 1685
                  79****** PP

  == domain 2  score: 50.8 bits;  conditional E-value: 1.2e-16
        FATC    2 LsveqQVdrLIkeATdpeNLaqmyiGWcPww 32  
                  L+v  QVd+L  +AT++eNL+q+yiGWc +w
  KKY24120.1 2434 LPVDVQVDKLLAQATSVENLCQHYIGWCSFW 2464
                  89999************************** PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.18   1.6e+02      22     102 ..      95     180 ..      86     184 .. 0.74
   2 !    7.0   0.0    0.0066       5.6      24     108 ..     180     275 ..     173     321 .. 0.71
   3 !   10.8   0.0   0.00043      0.36       4      57 ..     471     526 ..     471     564 .. 0.83
   4 ?   -2.2   0.0       4.4   3.7e+03      29      50 ..     582     605 ..     574     621 .. 0.77
   5 ?    4.7   0.0     0.033        28      59     123 ..     658     723 ..     633     757 .. 0.78
   6 ?    2.0   0.0      0.23     2e+02       2      49 ..    1000    1053 ..     999    1069 .. 0.80
   7 ?    4.6   0.0     0.037        31      59     132 ..    1773    1842 ..    1767    1853 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.18
        Cnd1  22 lvepLrkrLkDedpyVRktaaivvakL......ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiis 102
                 +   Lr++L+ +dp+V   aa  + +L      +++++v+  ++ + l+ l +D +++ +  a++++ e++++s++++y  +p+i+ 
  KKY24120.1  95 FAGFLRQALRSNDPTVLAAAAKSLGRLarpggaLTAELVE-AEIQAALEWLSSDRQESRRLAAVLVIRELARNSPTLLYGFVPQIFE 180
                 5667999999999999999999999995444433333333.3334445555589999999999999999999999999999988875 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0066
        Cnd1  24 epLrkrLkDedpyVRktaaivvakL....ilndmvkekgflselak....lleDenprVvanalaalteisekse...naiynllpdiisklsdal 108
                 e +  +L+D++p +R+taa +v+      + +d+ + ++ +s++++     l+ +n+  +  +l++l+e+++k++   ++ y++  +i+ +l+d+ 
  KKY24120.1 180 ELIWVALRDPKPIIRETAAEAVSACfaiiVARDTQIRQQWFSRIYDealaGLKSSNTDWIHGSLLILSELLSKGSmfmQEYYRSCCEILLRLKDHR 275
                 556678*************99999988877888777777665554422215699999999999999999999976333445666666666666544 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00043
        Cnd1   4 alairtlgcirvp.nlveylvepLrkrLkD.edpyVRktaaivvakLilndmvkek 57 
                 ala+ tlg++ ++ +++ ++v ++++r  D ++p +Rk aa+++++L+ +d +  +
  KKY24120.1 471 ALALHTLGSFDFQgHFLNEFVRDVTARYVDnKNPEIRKAAALTCCQLFMQDPIVYQ 526
                 799********985799********99988469**************888876544 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 4.4
        Cnd1  29 rLkDedpyVRktaaivvakL..il 50 
                 +++De   VR+ a+ ++ +L   +
  KKY24120.1 582 AVNDEVFAVREAAICIIGRLsaTN 605
                 678999999999999999995444 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.033
        Cnd1  59 flselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalne.csewgqitilefL 123
                 ++s l+   +D+n+ V+a  + al e+++ ++++i    p+++  l+dal++  s +++   l+++
  KKY24120.1 658 MVSALLPKATDPNSGVSATIIRALGEMATVGGEEIKAHIPKLMPILLDALQDlGSPAKREAALKTI 723
                 4555566669********************99***********99999988842344444444444 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.23
        Cnd1    2 iRalairtlg....cirvpnlveylvepLrkrLkDe..dpyVRktaaivvakLi 49  
                  +R +ai tl+     ++v++    ++ pL k +  +  d + R+ a+ +v  Li
  KKY24120.1 1000 VRKNAIETLSklsrLVNVSDYASMIIHPLAKIMGSPinDIQLRQAALDCVVALI 1053
                  9*********98788888888888999999999885447788999999999984 PP

  == domain 7  score: 4.6 bits;  conditional E-value: 0.037
        Cnd1   59 flselaklleDenprVvanalaalteisek.senaiynllpdiisklsdalnecsewgqitilefLlsyipkdkq 132 
                  ++ +l   ++ +np+V++ ++++l ++ +k  + ++y l+  + s++  +       + ++i++++ ++ pk  +
  KKY24120.1 1773 VIPQLIARINQHNPKVRQAVHHLLAQVGKKhPQALVYPLTVAMKSNVTRR-----SLSAHHIMDSMRQHSPKLVE 1842
                  67889999**********************54456788888888887743.....55566777777777777655 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   7.7e-06    0.0065     114     306 ..      94     302 ..      60     337 .. 0.79
   2 !   14.0   2.4   1.6e-05     0.013      96     439 ..     470     925 ..     462     953 .. 0.77
   3 ?    3.8   0.1     0.019        17     315     387 ..     995    1072 ..     980    1090 .. 0.69
   4 ?   -1.6   0.1      0.89   7.6e+02     154     187 ..    1774    1808 ..    1764    1842 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.7e-06
                 HHHHHHHHHHT-SSHHHHHHHHHHHHHCCCC....CHHCCCCCHHHHHHHCT.T-SSHHHHHHHHHHHHHH.HCCCCCCC.HHHHHHHCCHHHHHHCS- CS
   Adaptin_N 114 dlapaikkllkdrspyvrkkAalailklykk....dpdllrkqlveeikell.sdkdpgvvlaAvalleei.kkndrlll.kllpklvrrLcnllteld 205
                 ++a  ++++l++ +p v  +Aa ++ +l +     +++l++ + ++   e l sd++ +  laAv ++ e+ + ++ l l   +p++++ +  +l ++ 
  KKY24120.1  94 QFAGFLRQALRSNDPTVLAAAAKSLGRLARPggalTAELVEAE-IQAALEWLsSDRQESRRLAAVLVIRELaRNSPTL-LyGFVPQIFELIWVALRDPK 190
                 6677799**********************98677788888888.777777777788899999*********5555555.4599******9999999999 PP

                 HHHHHHHHHHHC....C---SSHHHH....HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST.....HHHCCHHCHHHHHHSSCCTCHHHHHCHHHH CS
   Adaptin_N 206 pwlqvkiikllt....rlarqepeersk..kellesllnllqssnnaVlletvnlivelapkne.....livlavnaLvrllsskdenlryvaLrtllk 293
                 p++  +  + ++    + ++++++ r++  ++++++ l+ l+ssn+  +  +   + el +k +      +  ++++L rl +++d+ +r  + +t+  
  KKY24120.1 191 PIIRETAAEAVSacfaIIVARDTQIRQQwfSRIYDEALAGLKSSNTDWIHGSLLILSELLSKGSmfmqeYYRSCCEILLRLKDHRDPKIRAQVTQTIPV 289
                 99887777766633335666666666668999999999999999999999999999999999888888888999*******999999999999999988 PP

                 HHHHX.XTTTTTTT CS
   Adaptin_N 294 ivkke.pkavqhld 306
                 ++  +  ++v +++
  KKY24120.1 290 LADYHaVEFV-NNY 302
                 8887733333.333 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHCCC-.-CCCHHHHHHHHHH.HHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC......HHHHHHHCT....T-SSH................ CS
   Adaptin_N  96 rglALrvLssir.vpelaedlapaikk.llkdrspyvrkkAalailklykkdpdllrkq......lveeikell....sdkdp................ 166
                  +lAL++L+s+  +   +  +++++++  +  ++p +rk+Aal+  +l+ +dp  ++        + e i +ll                         
  KKY24120.1 470 IALALHTLGSFDfQGHFLNEFVRDVTArYVDNKNPEIRKAAALTCCQLFMQDPIVYQTSahsiqvVREVIDKLLtigvG---Dedadirckilqsldsk 565
                 579********988899999999998615668899****************7666655431001223333333355552...0444779********** PP

                 .......................HHHHHHHHHHHHHHCCCCCCC.HHHHHHHCCHHHHH........................................ CS
   Adaptin_N 167 .......................gvvlaAvalleeikkndrlll.kllpklvrrLcnll........................................ 201
                                         v  aA+ ++ ++  ++ +++   l+kl  +L + l                                        
  KKY24120.1 566 fdrhlgrpenirclflavndevfAVREAAICIIGRLSATNPAYVfPPLRKLLVNLLTGLgyantarqkeecaklislfvrngtklirtyvdpmvsallp 664
                 ***********************777777777777755555555533333333333333566677777777777777777777777************* PP

                 ..HCS-HHHHHHHHHHHCC---SSHHHH....HHHHHHHCGGCG.CSSCHHHHHHHHHCCHCCCCST.......HHHCCHHCHHHHHH.SSCCTCHHHH CS
   Adaptin_N 202 ..teldpwlqvkiiklltrlarqepeersk..kellesllnllq.ssnnaVlletvnlivelapkne.......livlavnaLvrlls.skdenlryva 287
                   t++++   ++ii+ l ++a +  ee +    +l++ ll  lq   ++a   ++ ++i +la ++         + ++ + Lv  ++ ++ e l+  a
  KKY24120.1 665 kaTDPNSGVSATIIRALGEMATVGGEEIKAhiPKLMPILLDALQdLGSPAKREAALKTISQLALNSGyvvkpykDYPQLLSTLVNIIKhEPHEYLKREA 763
                 ***********************9999955677788888888887444455555667888777777777776665678999999999988889999999 PP

                 HCHHHHHHHHX...XTTTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHT.TSSXXHHHHHHHHHHHHHHHHHS....CCHHHHH CS
   Adaptin_N 288 Lrtllkivkke...pkavqhldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyv.kevadedfksklvkaIgrlaekf....atdaewv 378
                 ++ +  +   +    + ++++d + + +  ++ vs  ++ ++ l+   de     ++++L++ + k+ +  ++ s++++aI ++ ++     ++  +++
  KKY24120.1 764 IKLMGILGALDpyeAQLISEKDKDQHPVAEQQEVSDVTLIMQGLTPSNDEYYPTVVINTLLNTIlKDNSLVQYHSAVIDAIVTIFKTLglkcVPFLHQI 862
                 99999999987665677779999999999999999888888888888888888889999999985555555588888888887777777777******* PP

                 HHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCG..XXSHHHHHHHHHHH CS
   Adaptin_N 379 ldvllellslsgesvkdeivevirdliqkvpelheeiiekLaellek..ieseearaaaiWll 439
                 ++ +l ++++s+ s+ d++ +++  l++ v++  +  + +++ ++ +   ++++++  ++ l+
  KKY24120.1 863 IPAFLTVIRSSSVSHLDSYFNQLSILVSIVKQHIRAFLPEMITVIREywNKNAQVQSTILSLV 925
                 *********************************************998666666777777665 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.019
                  TSXHHHHHHHHHHHCCCXXTTTHHH....HHHHHHHHT.TSSXXHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHT CS
   Adaptin_N  315 dddvsirlkaldlllklvdesNvke....ivkeLkkyv.kevadedfksklvkaIgrlaekfatdaewvldvllells 387 
                  + ++s+r+ a+++l+kl    Nv+     i+  L k + + + d ++++++++ +  l+ +  +d+ ++++ + + ++
  KKY24120.1  995 SAPISVRKNAIETLSKLSRLVNVSDyasmIIHPLAKIMgSPINDIQLRQAALDCVVALIFQLGQDFIHFIPLVSKSIK 1072
                  567777777777777777777776666666777777766666666677777777777766666666666666665555 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.89
                  HHHHHHCTT-SSHHHHHHHHHHHHHH.HCCCCCCC CS
   Adaptin_N  154 veeikellsdkdpgvvlaAvalleei.kkndrlll 187 
                  +++++  +++++p+v  a+ +ll ++ kk++++l+
  KKY24120.1 1774 IPQLIARINQHNPKVRQAVHHLLAQVgKKHPQALV 1808
                  44444445677777777777777777666666533 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.071        61       3      66 ..      47     107 ..      45     118 .. 0.85
   2 ?   -0.6   0.0       1.5   1.3e+03      33      72 ..     284     324 ..     267     331 .. 0.75
   3 !   11.1   0.0   0.00033      0.28      31      73 ..     676     721 ..     668     756 .. 0.87
   4 !    6.8   0.4    0.0072       6.2      13     102 .]     824     911 ..     817     911 .. 0.78
   5 ?    4.1   0.2     0.049        41      25      84 ..     874     934 ..     855     950 .. 0.81
   6 ?    4.9   0.1     0.029        24      21      84 ..     994    1058 ..     977    1071 .. 0.79
   7 ?    0.5   0.0      0.67   5.7e+02      62      95 ..    1176    1209 ..    1160    1214 .. 0.84
   8 ?   -1.7   0.0       3.2   2.7e+03      45      76 ..    1655    1686 ..    1653    1688 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.071
         UME   3 qqhilgiltrlseklndshgkkslaekkraikaleeliklagssissalpqimacLqsaleide 66 
                 q++   i+ rls+ +   +++  +++k   i al  li + g  ++   +q   +L++al++++
  KKY24120.1  47 QDYYAHITERLSHLII--RSQ-NVEDKLGGIAALDLLIDFDGVDAAKKTTQFAGFLRQALRSND 107
                 7778889999999994..443.789***********************************9854 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.5
         UME  33 ikaleeliklagss.issalpqimacLqsaleidelrsaal 72 
                  + + +l  +   + ++ +l + m+ Lqs l+ ++ r++a+
  KKY24120.1 284 TQTIPVLADYHAVEfVNNYLHKFMIYLQSSLKREKDRNVAF 324
                 555555555555446899999***********999888887 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00033
         UME  31 raikaleeliklagssissalpqimacLqsalei...delrsaals 73 
                  +i+al+e+  + g++i+  +p++m +L +al++   ++ r+aal+
  KKY24120.1 676 TIIRALGEMATVGGEEIKAHIPKLMPILLDALQDlgsPAKREAALK 721
                 58******************************98655566666665 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0072
         UME  13 lseklndshgkkslaekkraikaleeliklagssissalpqimacLqsaleidelr..saalsvWatllsnlededleplleqtfalivqlw 102
                 l+  l+d +    ++    +i a+  ++k +g +  ++l qi+  + + +++  +   +  ++  ++l+s+++ +++ ++l++++ +i ++w
  KKY24120.1 824 LNTILKDNS---LVQYHSAVIDAIVTIFKTLGLKCVPFLHQIIPAFLTVIRSSSVShlDSYFNQLSILVSIVK-QHIRAFLPEMITVIREYW 911
                 333333332...4688999************************999999999765522567999999998886.689999999999999998 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.049
         UME  25 slaekkraikaleeliklagssissalpqimacLqsalei.delrsaalsvWatllsnled 84 
                 s+++   + + l+ l+++++++i+ +lp ++++ +   ++ ++++s  ls  ++ +++le 
  KKY24120.1 874 SVSHLDSYFNQLSILVSIVKQHIRAFLPEMITVIREYWNKnAQVQSTILSLVESIARSLEG 934
                 67777888999******************99999999888678888888888888888765 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.029
         UME   21 hgkkslaekkraikaleeliklagss..issalpqimacLqsaleidelrsaalsvWatllsnled 84  
                   +  +++ +k+ai+ l++l +l++ s  +s+++  +  ++ s +++ +lr+aal++  +l+ +l +
  KKY24120.1  994 TSA-PISVRKNAIETLSKLSRLVNVSdyASMIIHPLAKIMGSPINDIQLRQAALDCVVALIFQLGQ 1058
                  333.8999*************99877768999999999999***************9999988864 PP

  == domain 7  score: 0.5 bits;  conditional E-value: 0.67
         UME   62 leidelrsaalsvWatllsnlededleplleqtf 95  
                  l++d ++sa  s+W +l  + +de +++l  ++f
  KKY24120.1 1176 LAKDLFNSAFASCWTELFDQYQDELIKQLEHALF 1209
                  67788899999***********999988877666 PP

  == domain 8  score: -1.7 bits;  conditional E-value: 3.2
         UME   45 ssissalpqimacLqsaleidelrsaalsvWa 76  
                  ++++  ++qi+   + a e++e+ ++   +Wa
  KKY24120.1 1655 EEVREGVAQILHSYKMATEHNEVSYKGWHAWA 1686
                  56788899***********************8 PP

>> IFRD  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.14   1.2e+02      57     181 ..      29     150 ..      10     166 .. 0.74
   2 ?    3.4   0.1     0.039        34      66     153 ..     290     378 ..     278     394 .. 0.74
   3 ?    2.7   0.0     0.064        55     119     175 ..     652     707 ..     633     712 .. 0.75
   4 ?    4.1   0.0     0.025        21      46     108 ..     706     770 ..     702     784 .. 0.81
   5 ?   -0.8   0.0      0.77   6.6e+02     110     205 ..     803     890 ..     795     906 .. 0.66
   6 ?    3.5   0.0     0.036        31      61     153 ..     923    1011 ..     872    1026 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.14
        IFRD  57 aaLesllellsshyleefveerlatlldalekslkkgkseEqalAlkalallcitlgagdeseeileelkpvLkriikdssvslsakaaaieaLglltf 155
                 + +esl++ll+ ++ +e  ++ +a +++ l   + ++++ E  l   a+  l+i ++ + ++ +  +++   L++++++++  +++ aaa+++Lg l+ 
  KKY24120.1  29 ELFESLVTLLR-EVTPERFQDYYAHITERLSHLIIRSQNVEDKLGGIAALDLLIDFDGV-DAAKKTTQFAGFLRQALRSND--PTVLAAAAKSLGRLAR 123
                 45677777665.56666678899999999999888888887666665555556887765.555677889999**9999999..9999********9999 PP

        IFRD 156 vggadeeeiee.lmeflleifssdgqs 181
                  gga  +e++e   +  le +ssd q+
  KKY24120.1 124 PGGALTAELVEaEIQAALEWLSSDRQE 150
                 998887765541577777777777764 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.039
        IFRD  66 lsshyleefveerlatlldalekslkkgkseEqalAlkalallcitlgagdesee..ileelkpvLkriikdss.vslsakaaaieaLgll 153
                 l++  + efv++ l +++  l +slk++k   + +A+ a++ +++ +g+   +    i+  +++ L++ +k+++ v+++   ++i+ ++++
  KKY24120.1 290 LADYHAVEFVNNYLHKFMIYLQSSLKREK--DRNVAFIAIGKIALAVGSAMAQYLdgIILYIRENLSAKVKNRAaVNEAPMFQCISMMSIA 378
                 66667889******************995..566777777777777777544432448888888888888887756666666777666665 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.064
        IFRD 119 eeileelkpvLkriikdssvslsakaaaieaLglltfvggad.eeeieelmeflleif 175
                 +++++ +++ L   ++d +  + + a++i+aLg ++ vgg++ ++ i +lm +ll+ +
  KKY24120.1 652 RTYVDPMVSALLPKATDPN--SGVSATIIRALGEMATVGGEEiKAHIPKLMPILLDAL 707
                 5566667777777777777..88999*******9999999985778889999999866 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.025
        IFRD  46 elt.eksaktReaaLesllell.sshyleefveerlatlldalekslkkgkse.EqalAlkalall 108
                 +l+   s  +ReaaL+++ +l  +s y+ +   +++ +ll+ l +++k + +e  +  A+k++++l
  KKY24120.1 706 ALQdLGSPAKREAALKTISQLAlNSGYVVKPY-KDYPQLLSTLVNIIKHEPHEyLKREAIKLMGIL 770
                 5554457789********99887999999866.6699***********999998888888888776 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 0.77
        IFRD 110 itlgagdeseeileelk..pvLkriikdssvslsakaaaieaLglltfvggadeeeieelmeflleifssdgqsieaadsaskalvtaalsawglLlt 205
                 i  g   + +e++ +++  ++L++i+kd+s  ++ ++a+i+a+  +t++ + +    +++  fl++i+   ++ i ++++++   + +  +++++L++
  KKY24120.1 803 IMQGLTPSNDEYYPTVVinTLLNTILKDNS-LVQYHSAVIDAI--VTIFKTLG----LKCVPFLHQIIPAFLTVIRSSSVSH---LDSYFNQLSILVS 890
                 444777777777776542267999999999.999999999987..77777666....6666677776666666666655555...4444455555555 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.036
        IFRD   61 sllellsshyleefveerlatlldalekslkkgkseEqalAlkalallcitlgagdeseeileelkpvLkriikdssvslsakaaaieaLgll 153 
                  sl+e +++ +  e  +++la+ll+ +++ + ++ s  +    ++l  +++    g   ee+++ ++p + r+ ++ s+ +s++++aie+L+ l
  KKY24120.1  923 SLVESIARSLEGE-FKKNLADLLPLMLSLMERDMSPARRPSERILHTFLVF---GNGGEEYMHLIVPAIVRLFETTSAPISVRKNAIETLSKL 1011
                  4555555555555.6788999999999999999999999999999999888...57799*******************************944 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1    0.0021       1.8       6      41 ..    1312    1347 ..    1309    1348 .. 0.91
   2 ?   -0.5   0.0       2.2   1.9e+03      32      50 ..    1405    1423 ..    1394    1428 .. 0.84
   3 ?    0.9   0.0       0.8   6.8e+02      23      60 ..    1508    1544 ..    1499    1547 .. 0.87
   4 ?    3.5   0.0      0.12     1e+02      30      42 ..    1632    1644 ..    1624    1646 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0021
      TPR_19    6 dyaeAlalleqalqedpknaearllLAeallalgql 41  
                  + +eAla++ +  ++dp+n e++++ +++l alg++
  KKY24120.1 1312 RWEEALAAYNARDKQDPGNFEIAMGRMRCLHALGEW 1347
                  568999999999999*******************97 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.2
      TPR_19   32 AeallalgqldeAealLda 50  
                  A++ l  +q+d+A + +d+
  KKY24120.1 1405 AILALHRNQFDAAAQFIDQ 1423
                  7888999999999999887 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.8
      TPR_19   23 knaearllLAeallalgqldeAealLdalpeedpddar 60  
                  +n+e ++  A+++ ++g++  Ae+ +  l + ++d a+
  KKY24120.1 1508 ENLEMWIKFANLCRKSGRPGLAERSITSLSNVARD-AQ 1544
                  49999*******************99999998888.55 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.12
      TPR_19   30 lLAeallalgqld 42  
                  lLA+++l++g+++
  KKY24120.1 1632 LLAKCYLKQGEWQ 1644
                  69********986 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.062        53      54     107 ..      19      68 ..       9      85 .. 0.80
   2 ?   -3.2   0.0       3.8   3.3e+03     380     423 .]     228     271 ..     227     271 .. 0.91
   3 ?   -2.4   0.0       2.2   1.9e+03     361     421 ..     602     663 ..     599     664 .. 0.76
   4 !   13.6   0.0   3.2e-05     0.027     369     421 ..     693     748 ..     685     757 .. 0.87
   5 ?    0.7   3.8      0.25   2.2e+02      46     131 ..     823     899 ..     816    1077 .. 0.62
   6 ?   -4.1   0.0       7.7   6.5e+03      66     105 ..    1187    1226 ..    1179    1232 .. 0.81
   7 ?   -0.7   0.0      0.69   5.9e+02     196     249 ..    1538    1593 ..    1522    1604 .. 0.77
   8 ?   -2.8   0.0       2.9   2.5e+03     332     369 ..    1772    1809 ..    1770    1810 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.062
     MMS19_C  54 nes..saayahailstllkllekkqtdlekeellnsyydrivprlltlvvsaasts 107
                 n +  +++ ah + ++l++ll++++     +e+ + yy +i  rl  l++++ + +
  KKY24120.1  19 N-KdvRNRAAHELFESLVTLLREVT-----PERFQDYYAHITERLSHLIIRSQNVE 68 
                 2.2356999**************88.....6789**************99987755 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.8
     MMS19_C 380 lqaLdlpdaevkastLetlksileespslvsehlssLvprLLkl 423
                 l +L+ ++++    +L +l+++l + +  ++e+  s  + LL+l
  KKY24120.1 228 LAGLKSSNTDWIHGSLLILSELLSKGSMFMQEYYRSCCEILLRL 271
                 56899999************************999998888875 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.2
     MMS19_C 361 khvPkslllpeLptLlPlLlqaLdlpdae.vkastLetlksileespslvsehlssLvprLL 421
                 + + ++++ p L +Ll  Ll++L   +++  k    + ++  +++  +l+  +++  v+ LL
  KKY24120.1 602 SATNPAYVFPPLRKLLVNLLTGLGYANTArQKEECAKLISLFVRNGTKLIRTYVDPMVSALL 663
                 56778889999999999999999666655366777777788888888888888888888887 PP

  == domain 4  score: 13.6 bits;  conditional E-value: 3.2e-05
     MMS19_C 369 lpeLptLlPlLlqaL.dlpdaevkastLetlksileespslvse..hlssLvprLL 421
                   ++p+L+P+Ll+aL dl +++ + ++L+t++ ++ +s  +v++     +L ++L+
  KKY24120.1 693 KAHIPKLMPILLDALqDLGSPAKREAALKTISQLALNSGYVVKPykDYPQLLSTLV 748
                 679*******************************9999888888665666666665 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.25
     MMS19_C  46 kldlvlksnessaayahailstllkllekkqtdlekeellnsyydrivprlltlvvsaastsssiltddrllevlgriinlivrsl 131
                  l+++lk+n+   +y  a+++++++++++    l    ++  + ++i+p +lt++ s++ ++    +  + l++l++i+++ +r +
  KKY24120.1 823 LLNTILKDNSL-VQYHSAVIDAIVTIFKTLG--L----KCVPFLHQIIPAFLTVIRSSSVSH--LDSYFNQLSILVSIVKQHIRAF 899
                 45777777776.8888888888888888877..5....678888888888888855544422..2222222333333333333333 PP

  == domain 6  score: -4.1 bits;  conditional E-value: 7.7
     MMS19_C   66 stllkllekkqtdlekeellnsyydrivprlltlvvsaas 105 
                  s+  +l+++ q +l+k+ + + ++++i p +++ v++ a+
  KKY24120.1 1187 SCWTELFDQYQDELIKQLEHALFSQNIPPEIIQIVLNLAE 1226
                  6667889999999999999999999999999999888765 PP

  == domain 7  score: -0.7 bits;  conditional E-value: 0.69
     MMS19_C  196 ellellaseaespflrlaylrllallvNKflkdedlselldellesieeslie...a 249 
                  ++ +  a+ ++ p    a l+   +  NK+++ + l +++++l++++ + + +   +
  KKY24120.1 1538 NVAR-DAQGNTPPEVIYAHLKYSWSAENKHVALSHLRDFTTDLEQEFRQREAQlahM 1593
                  4444.6677788888888889999999****99***************999886431 PP

  == domain 8  score: -2.8 bits;  conditional E-value: 2.9
     MMS19_C  332 tvlpklvegfkssdsetkenyLvALshllkhvPkslll 369 
                  +v+p+l++++++ +++ ++++   L+++ k+ P++l+ 
  KKY24120.1 1772 EVIPQLIARINQHNPKVRQAVHHLLAQVGKKHPQALVY 1809
                  689999******99999999999999999999999886 PP

>> Tti2  Tti2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.3   3.6e+03     114     145 ..     689     721 ..     649     727 .. 0.67
   2 ?    2.3   0.2      0.12     1e+02     238     276 ..     834     872 ..     793     877 .. 0.80
   3 ?    3.8   0.0     0.041        35     100     151 ..     920     970 ..     904     972 .. 0.82
   4 !    6.9   0.0    0.0048       4.1     118     155 ..     977    1016 ..     972    1093 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.3
        Tti2 114 skeieanwplivPpiLnllDdtd.tsvKlrGlk 145
                  +ei+a++p ++P +L  l d   ++ ++ +lk
  KKY24120.1 689 GEEIKAHIPKLMPILLDALQDLGsPAKREAALK 721
                 336788888888888865544431555555555 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.12
        Tti2 238 prlvellleqlsevveelgistvkhLkrlipllseilsn 276
                 ++  +++++ + ++ ++lg ++v  L ++ip   ++++ 
  KKY24120.1 834 VQYHSAVIDAIVTIFKTLGLKCVPFLHQIIPAFLTVIRS 872
                 5555688899999********************999986 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.041
        Tti2 100 kaisvlawiirqlqskeieanwplivPpiLnllDdtdtsvKlrGlklLqtll 151
                  ++s+++ i r l+ + +++n+  + P  L+l++ +  + +  + ++L+t+l
  KKY24120.1 920 TILSLVESIARSLEGE-FKKNLADLLPLMLSLMERDMSPARRPSERILHTFL 970
                 3567888888888888.89*******************************98 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0048
        Tti2  118 eanwplivPpiLnllDdtd..tsvKlrGlklLqtllekle 155 
                  e++++livP+i+ l + t+  +sv+ ++++ L++l   ++
  KKY24120.1  977 EEYMHLIVPAIVRLFETTSapISVRKNAIETLSKLSRLVN 1016
                  6899***************9999*********99866555 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.4   2.1e+03      44      88 ..     153     197 ..     111     232 .. 0.68
   2 ?    2.0   0.1      0.38   3.2e+02       2      32 ..     319     349 ..     318     360 .. 0.87
   3 ?    3.5   0.0      0.12   1.1e+02      10      35 ..     372     397 ..     367     433 .. 0.90
   4 ?   -1.7   0.1       5.3   4.5e+03      22      85 ..     484     555 ..     467     565 .. 0.58
   5 ?   -0.7   0.0       2.6   2.3e+03      21      80 ..     651     710 ..     638     720 .. 0.71
   6 ?    1.0   0.0      0.75   6.4e+02      21      84 ..     833     896 ..     806     903 .. 0.61
   7 ?   -0.2   0.0       1.8   1.5e+03      22      77 ..     977    1032 ..     968    1050 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.4
  Vac14_Fab1_bd  44 RyyacEslyniakvakgevlkllneifdalvklvaDsdesvksga 88 
                    R  a+  +  +a+ + + +  ++ +if+ ++  + D ++ ++++a
     KKY24120.1 153 RLAAVLVIRELARNSPTLLYGFVPQIFELIWVALRDPKPIIRETA 197
                    555555555556666666666666666666666666666666543 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.38
  Vac14_Fab1_bd   2 arkggligLaavaialekkikeyleeivkpv 32 
                     r+ + i++  +a+a+++++++yl+ i+  +
     KKY24120.1 319 DRNVAFIAIGKIALAVGSAMAQYLDGIILYI 349
                    588899********************99766 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.12
  Vac14_Fab1_bd  10 Laavaialekkikeyleeivkpvlkc 35 
                    +  ++ia+++ +++y+e +++p+++c
     KKY24120.1 372 ISMMSIAVGQVLSKYMEALLDPIFAC 397
                    6789*******************998 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 5.3
  Vac14_Fab1_bd  22 keyleeivkpvlkcfsD.kdsrvRyya...cEslyn...iakvakgevlkllneifdalvkl.vaDsdesvk 85 
                     ++l+e+v+ v +   D k+ ++R  a   c  l+    i+ ++  + ++++ e+ d l  + v D+d++++
     KKY24120.1 484 GHFLNEFVRDVTARYVDnKNPEIRKAAaltCCQLFMqdpIVYQTSAHSIQVVREVIDKLLTIgVGDEDADIR 555
                    556666666665444331445566443222555553333666677777777777777776664667777776 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 2.6
  Vac14_Fab1_bd  21 ikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDs 80 
                    i++y++ +v+ +l   +D +s v  + + +l  +a v  +e+  ++ ++  +l   + D 
     KKY24120.1 651 IRTYVDPMVSALLPKATDPNSGVSATIIRALGEMATVGGEEIKAHIPKLMPILLDALQDL 710
                    677888888888888888888887777777777777777777777777776666666554 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.75
  Vac14_Fab1_bd  21 ikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesv 84 
                    + +y + +++ ++++f+    ++  +    +     v++++ +++l + f+ l+ lv+ +++++
     KKY24120.1 833 LVQYHSAVIDAIVTIFKTLGLKCVPFLHQIIPAFLTVIRSSSVSHLDSYFNQLSILVSIVKQHI 896
                    4455555555555555555555555555555555666666666666666666666666655555 PP

  == domain 7  score: -0.2 bits;  conditional E-value: 1.8
  Vac14_Fab1_bd   22 keyleeivkpvlkcfsDkds..rvRyyacEslyniakvakgevlkllneifdalvklv 77  
                     +ey++ iv+ +++ f+ +++   vR  a+E+l  +++ ++     + + i + l k++
     KKY24120.1  977 EEYMHLIVPAIVRLFETTSApiSVRKNAIETLSKLSRLVNV--SDYASMIIHPLAKIM 1032
                     78999**********98886346899999999888887653..344445555555555 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.12        98      17      41 .]      99     123 ..      98     123 .. 0.92
   2 !    7.0   0.0    0.0075       6.4      13      41 .]     983    1013 ..     982    1013 .. 0.96

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.12
                 HHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm  17 LvrLLssedeevqeeAawALsNLaa 41 
                 L + L+s d++v+ +Aa  L+ La+
  KKY24120.1  99 LRQALRSNDPTVLAAAAKSLGRLAR 123
                 77899***************99986 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0075
                  HHHHHHHHTT..TSSHHHHHHHHHHHHHHTT CS
         Arm   13 avppLvrLLs..sedeevqeeAawALsNLaa 41  
                  +vp+ vrL +  s   +v+++A  +Ls L++
  KKY24120.1  983 IVPAIVRLFEttSAPISVRKNAIETLSKLSR 1013
                  69*************************9986 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.26   2.2e+02      41      79 ..    1286    1320 ..    1250    1349 .. 0.70
   2 ?    2.7   0.0      0.17   1.4e+02      16      52 ..    1391    1427 ..    1385    1436 .. 0.82
   3 ?    4.3   0.1     0.057        49      59      73 ..    1630    1644 ..    1615    1648 .. 0.63

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.26
                  HHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3   41 rAyellrkaklnskslgcrylfAqcllkLkkyeeAiaaL 79  
                   A+ +lrka    +  +   +    + kL+++eeA+aa+
  KKY24120.1 1286 AAIGILRKA----SGFRDVEVREAWYEKLERWEEALAAY 1320
                  555555555....55555555555566777777777775 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.17
                  H.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHH CS
      ANAPC3   16 laaetespedayllAlclylngqykrAyellrkakln 52  
                  + +++esp+ a++ A   ++++q++ A ++++++++ 
  KKY24120.1 1391 MVMKKESPDRAFFGAILALHRNQFDAAAQFIDQTREG 1427
                  448899**************************99444 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.057
                  HHHHHHHHHHTT-HH CS
      ANAPC3   59 rylfAqcllkLkkye 73  
                    l+A+c+lk+++++
  KKY24120.1 1630 PKLLAKCYLKQGEWQ 1644
                  555555555555554 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.4   1.2e+03      12      70 ..      66     124 ..      51     164 .. 0.75
   2 ?    3.8   0.1     0.076        65       1      93 [.     224     319 ..     224     341 .. 0.86
   3 ?   -0.4   0.0       1.4   1.2e+03       7      51 ..     665     709 ..     660     713 .. 0.86
   4 ?    4.1   0.1     0.061        52       7      74 ..     706     777 ..     701     794 .. 0.82
   5 ?   -0.4   0.1       1.5   1.3e+03      45      83 ..     871     907 ..     818     933 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.4
     RTP1_C1  12 llpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadv 70 
                  +  +  g+  L  li     +a+++ ++ +  l +aL+ +d+ v  +a k L  La  
  KKY24120.1  66 NVEDKLGGIAALDLLIDFDGVDAAKKTTQFAGFLRQALRSNDPTVLAAAAKSLGRLARP 124
                 4444555666666666666666888999999999999*****99999999999999865 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.076
     RTP1_C1   1 lqealkdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleey...eeenekesld 93 
                 ++eal+ l+++        l+ L++l++k s   ++  ++  ++ll+   + d+ +  ++ +++  Lad++  e+++  l+++    +++ k++ d
  KKY24120.1 224 YDEALAGLKSSNTDWIHGSLLILSELLSKGSMFMQEYYRSCCEILLRLKDHRDPKIRAQVTQTIPVLADYHAVEFVNNYLHKFmiyLQSSLKREKD 319
                 5788888888888888899*******************************************************9999999987774444444444 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.4
     RTP1_C1   7 dlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkd 51 
                 + +dp   v a  ++ L ++++   +e +++i+k++ +ll+aL+d
  KKY24120.1 665 KATDPNSGVSATIIRALGEMATVGGEEIKAHIPKLMPILLDALQD 709
                 5678888888888999999999999999***************98 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.061
     RTP1_C1   7 dlqdp.llpvrahglvlLrkliekkske..avldiekilkllleaLkde.dsYvYLnaikgLvaLadvfpee 74 
                  lqd   ++ r  +l ++++l+ ++     + +d +++l++l++ +k+e  +Y+  +aik++  L+  +p e
  KKY24120.1 706 ALQDLgSPAKREAALKTISQLALNSGYVvkPYKDYPQLLSTLVNIIKHEpHEYLKREAIKLMGILGALDPYE 777
                 55555245568899********99987677999*************97537899999***999999887765 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 1.5
     RTP1_C1  45 lleaLkdedsYvYLnaikgLvaLadvfpeevlklLleey 83 
                   +++++ dsY   n  ++Lv++++ + + +l++++   
  KKY24120.1 871 RSSSVSHLDSY--FNQLSILVSIVKQHIRAFLPEMITVI 907
                 34477788885..78889999999999999999887654 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.66   5.6e+02       7      40 ..    1274    1308 ..    1271    1311 .. 0.78
   2 ?    7.4   0.3     0.011         9      11      40 ..    1307    1336 ..    1302    1340 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.66
      TPR_14    7 laeallalGdpdeAiallrrala.laPddaeawll 40  
                  l ++  +l++ d+Ai +lr+a   ++ + +eaw++
  KKY24120.1 1274 LISINNHLQQSDAAIGILRKASGfRDVEVREAWYE 1308
                  66777899************966556677777765 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.011
      TPR_14   11 llalGdpdeAiallrralalaPddaeawll 40  
                  ++ l++++eA+a+++++ +++P++ e+ + 
  KKY24120.1 1307 YEKLERWEEALAAYNARDKQDPGNFEIAMG 1336
                  8899*******************9988765 PP

>> DUF3678  Protein of unknown function (DUF3678)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   7.0      0.01       8.7       8      25 ..    2299    2318 ..    2295    2319 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.01
     DUF3678    8 vsaasa..stsSfslaHlql 25  
                  ++aa a  st+S++++H+++
  KKY24120.1 2299 TAAAAAhsSTYSSRPTHRRS 2318
                  44554488***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 1.17u 0.30s 00:00:01.47 Elapsed: 00:00:00.52
# Mc/sec: 14260.93
//
Query:       KKY24121.1  [L=276]
Description: putative diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-13   48.4   0.1    1.4e-12   47.7   0.1    1.3  1  Methyltransf_16  Lysine methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.1   7.7e-17   1.4e-12       4     151 ..      51     212 ..      48     245 .. 0.77

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 7.7e-17
  Methyltransf_16   4 ekeLkieedtgesigrkvWdaavvlvkylekklake.lganelsklsvlELGsG.tGlvGlavaellpeakviltDleellellkknielnkn. 94 
                      ++ L   +  g   g+++W+   + +++l+ k++   +  + +s+  v ELG G +Gl+Glav +     + iltD+  + + l++ni +n + 
       KKY24121.1  51 SPGLLHSQRSGGTTGAVLWKVTPLIAQWLSDKTSVFwKAGALTSEAIVAELGCGiSGLIGLAVHQD--VRHYILTDQAYVFQTLRQNIIANTKq 142
                      56667778888899*****************876654444556677788*****66******9999..77889***************999877 PP

  Methyltransf_16  95 ..........alkskvkvevLdWgeele...edllekeevDlilaaDcvYledslelLvkvLkellkkes 151
                                a +++ +  + dW+ +     + +  ++ +Dl +a Dc+Y+   + + v+  +++++   
       KKY24121.1 143 egtgrkkipsAASDNLHLLPFDWEADSAenlKRVAGSKGIDLLIACDCIYNDFLVIPFVQACRDVCQLRR 212
                      88888888888999999******8665401145667889*************999999999998887543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1985.35
//
Query:       KKY24122.1  [L=664]
Description: putative fatty acid activator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-75  252.7   0.0    6.7e-75  252.3   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    0.00011   23.1   0.1    0.00037   21.4   0.1    2.0  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.3   0.0   7.5e-79   6.7e-75      57     422 ..     120     529 ..     117     530 .. 0.84

  Alignments for each domain:
  == domain 1  score: 252.3 bits;  conditional E-value: 7.5e-79
                  SHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS...... CS
  AMP-binding  57 spewvvallailkaGavvvplnptltaeelayiledseakvliatvdselleklleaaakleavklvivldadellkeeelkeeeeseekae...... 148
                  ++ w+ +++++ + +++ v+ ++tl++e l+  ++++e+ +++  vd+ ll++++++ ++ ++ k  i++ +++ +kee+l+e +++ ++ +      
   KKY24122.1 120 TLNWLSVAHGCCSQSITFVTAYDTLGKEGLRASIQQTESAAIF--VDAGLLHSVNQVIKDTPSIKY-IIYNNEKKPKEEDLNEISKDIKVIGlddlkk 214
                  6789***************************************..999999999999886655555.4455555566666666665555542567889 PP

                  ....-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCH. CS
  AMP-binding 149 ....kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaald. 241
                      +p++e+ + p+dla+i+YTSGT G+PKGV ++h+++va++a +       ++++d +l++lp ahi+++ +++++++++G+ +++ ++ + +d 
   KKY24122.1 215 lgekNPVKEVLPGPEDLACIMYTSGTSGTPKGVTVKHKAIVAAIAGVTAIVGPVIHPGDALLAYLPQAHILEF-IFENASIFWGSVMGYGSPRTLTDt 311
                  99998889999********************************99985333355789***************9.*****************9999777 PP

                  .HHHHHHHHHHHT-SEEEEEHHHHHHH.......HH.CCCHHCHHHHC.................................CGTT.-SEEEEESS-EB CS
  AMP-binding 242 .pklllelieklkvtviagvPrvleal.......le.sgalkaakkak.................................dlss.lrlvllggepls 296
                    + ++++i+++++t+++gvP+v+e++       ++  +    a ++k                                   ++ lr+++ gg+p+ 
   KKY24122.1 312 sVRKCKGDIAEFRPTILVGVPAVWEQVrkgivakVNsGS----AIQSKmfwgalsakqallasglpgvkvldslvfskvkaATGGrLRICMNGGGPIA 405
                  88889**********************888866633222....2222244555555566777777777777777777777745556************ PP

                  HHHHHHHHHHHTCEEEEEEEEGGGSSECEE.CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSE..EEEEEEETTS-SEBTT-HHHHHHHEEE CS
  AMP-binding 297 pellrffralfgeevlegYGlTEttgvvtv.lpleedkkklgsvGkplpgvevkivDeetgepvpdgee..GellvrgpgvmkgYlkkpeataeafds 391
                  ++++ f++    + ++ gYGlTEt+++ +  +pl +    +   G   +++++k+v+ e+ +++ ++++  Gell+rgp+v++gY+k++e+t+ a++ 
   KKY24122.1 406 RDTQIFISMAIAP-LISGYGLTETSAMGALcDPLAWT---PDAHGDLPACIDAKLVNFEDAGYFVTNNPpqGELLIRGPSVTEGYYKNEEETKVALT- 498
                  *******999875.**************743444444...556788889***************9999999*************************9. PP

                  TCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 392 egrwlrTGDlgrldedGyleivgRkkdlikl 422
                  e++w+rTGD++++d++G+++i++Rkk+l+k+
   KKY24122.1 499 EDGWFRTGDIAEFDKNGHIKIIDRKKNLVKT 529
                  867**************************96 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   4.1e-08   0.00037       1      37 [.     539     572 ..     539     612 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 4.1e-08
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE-- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkd 37 
                    ++Es++ ++p Va+++V++  d+    +++a++v+++
     KKY24122.1 539 KLESVYRASPLVANICVYAAEDQ---ARPIAIIVPAE 572
                    68*********************...*********53 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 4478.90
//
Query:       KKY24123.1  [L=1041]
Description: putative rna interference and silencing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-73  247.1   0.0      4e-73  246.3   0.0    1.4  1  Piwi      Piwi domain
    9.2e-16   58.7   0.1      4e-15   56.6   0.0    2.0  2  ArgoN     N-terminal domain of argonaute
    1.5e-09   38.1   0.0    5.2e-09   36.3   0.0    2.0  2  ArgoL2    Argonaute linker 2 domain
    1.6e-09   37.3   0.1    3.7e-09   36.1   0.1    1.7  1  ArgoL1    Argonaute linker 1 domain


Domain annotation for each model (and alignments):
>> Piwi  Piwi domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.3   0.0   8.9e-77     4e-73       2     300 ..     685    1000 ..     684    1002 .. 0.94

  Alignments for each domain:
  == domain 1  score: 246.3 bits;  conditional E-value: 8.9e-77
                  EEEEECSSGHHCHHHHHHHHHHTCCCCEEEEEHHHHCTCCHHHHHHHHHHHHHHHHTT-BS-EEESSSTTSSE......EEEEEEEEEECCC.SCCC CS
        Piwi    2 ilvilpekkkdkyheikkyletdlgiisqcillktilkrqlkkqtltnvllkinvKlGgknvliveikleldv..sptliiGidishgtagt.vdnp 95  
                  +++ilp+  + +y+ ik+ ++   gii  c+  ++  k +  +q+ +nv lk n+K+Gg+n  +  +kl + +   +t+++G+d++h++ g   + p
  KKY24123.1  685 MVFILPSRDTMIYNVIKRLCDLTYGIINLCVVGSKFAKPNN-DQYFANVGLKYNLKIGGTNHRLDTAKLGI-IgeGNTMVVGLDVTHPSPGSlGKAP 779 
                  79*************************************88.***************************88.56999***************8899* PP

                  EEEEEEEEEETSSEEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHTTTT-TTSEEEEEESS....S..S-HHHHHHHHHHHHHHHHHCTT.....T CS
        Piwi   96 svaavvasldkensrylaevstqassqelleklkeiikellrefkksskkkkperiivyRdGvseGqfkqvlnsEvkelkealkklkeqyq.....p 187 
                  s+a++vas+d + s++ a+++ q++++e++ +l++ ++  l+ +  ++kk  pe+iivyRdGvseGq++ vl++E++++++a+k+l +        p
  KKY24123.1  780 SIAGIVASIDRHLSQWPADIRIQEARKEMISDLESLMESRLKLWHSHNKK-YPENIIVYRDGVSEGQYNLVLDKELPSMRNACKRLYPAQDtkkgiP 875 
                  ********************************************888887.*********************************7665544455669 PP

                  EEEEEEEECSCS--EEESESTC..CCEETTTCEEETTEEEEEEEECCEEECCCCEEEEEEEEEEEEEEES............S-CCHHHHHHHHHCT CS
        Piwi  188 kltvivvqkrhhtrfFasdkae..ksqnippGtvvdkkitlpeekdfylcshaglqgtvkPtkytvlvdea..........klsadelqsltyklch 272 
                  ++  +vv krhhtrf++s+ ++  ++ n+++Gtvvd  it+  + df+l sh+ lqgt++P +y +++de+          k  ad l++lt++lc+
  KKY24123.1  876 RISILVVGKRHHTRFYPSELNHidRASNPLNGTVVDRGITEICNWDFFLQSHTALQGTARPGHYYIILDEIfrgrkisepfKTHADVLENLTHNLCY 972 
                  ******************9999999*********************************************766665555557899************ PP

                  GGTTTTSS-SS-HHHHHHHHHHHHHHTC CS
        Piwi  273 myqrstrsvsiPapvyyAhklAkrvrnn 300 
                  ++ r+t++vsi + +yyA++l +r+r++
  KKY24123.1  973 LFGRATKAVSICPAAYYADLLCERARCY 1000
                  ************************9986 PP

>> ArgoN  N-terminal domain of argonaute
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0     9e-19     4e-15       1     138 []     132     275 ..     132     275 .. 0.72
   2 ?   -1.3   0.0       0.7   3.1e+03      44      79 ..     820     866 ..     791     880 .. 0.64

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 9e-19
       ArgoN   1 rpiklraNyFkvtslpdktlyhYdveit.......kkakrvg.lrriiellleeykkselagkkpayDgrknlysakkLp....kefe.dl.paaeesa 85 
                 +p++l++NyF++t+  d tly+Y+ ++         ++  v+ lrr++el++e++   ++++  +a+D+++ l+++  L+      f+ +        +
  KKY24123.1 132 KPVVLYTNYFNMTAAMDLTLYRYNIQVLtrqnttpSTPLPVKkLRRVVELVIEDH-LGDVKN-GVATDFSSILIARSLLNgrsnLAFSvPYrG-----E 223
                 79***********99*********544224444552222333689******9744.466664.799*************87744444433332.....2 PP

       ArgoN  86 kkepsekrrrksrtfkvtikfaksinlqsLleylrgkq.deasle.aiqaLdivl 138
                 k++   + ++  ++ +v+++ ++++++++L++yl + + ++a+ +  iqaL++v+
  KKY24123.1 224 KED---EPQAAGDVWNVRLSITGQLRFSELVDYLTSTStSDAPKDeFIQALNVVV 275
                 222...23344569********88**********655565566556*******95 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.7
       ArgoN  44 l.......eeykkselagkkpayDgrknlysakkLp...kefe.dl.p 79 
                 l       ++y ++++  ++ +  g+ nl+  k+Lp   +     l p
  KKY24123.1 820 LklwhshnKKYPENIIVYRDGVSEGQYNLVLDKELPsmrN-ACkRLyP 866
                 2333454333667778888889999999999999987632.2235555 PP

>> ArgoL2  Argonaute linker 2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   1.2e-12   5.2e-09       1      47 []     521     570 ..     521     570 .. 0.91
   2 ?   -3.5   0.0       3.1   1.4e+04      18      30 ..     628     640 ..     620     640 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 1.2e-12
      ArgoL2   1 eRkksIle.gvkvlgyddd..pylrafGisidpqmttVpGRvLppPtlkY 47 
                 ++++sI++ g+ v+g +++  ++l++fG+ + p+++tVpGR+L +P++ Y
  KKY24123.1 521 QNAASIVNdGAVVMGVKPSinETLKSFGVAVTPELLTVPGRILVAPSVNY 570
                 79**************55444888************************99 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.1
      ArgoL2  18 dpylrafGisidp 30 
                 ++ l++ Gi+ ++
  KKY24123.1 628 SNKLQEIGIKLGQ 640
                 46679****9885 PP

>> ArgoL1  Argonaute linker 1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.1   8.3e-13   3.7e-09       3      52 .]     291     340 ..     289     340 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 8.3e-13
      ArgoL1   3 grsFfspp.skqrvdLggggleawrGfyqSvRptqggLllNvDvsntaFyk 52 
                 +++F  +p + ++ dL g gl+a+rGf  SvR ++++ l+Nv v + a yk
  KKY24123.1 291 NKHFENSPsQRNQYDL-GAGLQAIRGFLVSVRAATSRVLVNVQVRHLAVYK 340
                 56676666677888**.77*****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1041 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 6544.73
//
Query:       KKY24124.1  [L=461]
Description: putative alpha beta hydrolase fold-3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-33  115.7   0.1    1.7e-32  113.0   0.0    2.0  2  Abhydrolase_3  alpha/beta hydrolase fold
    4.4e-06   25.8   0.1      1e-05   24.7   0.0    1.6  2  COesterase     Carboxylesterase family
     0.0012   18.7   0.0      0.002   18.0   0.0    1.3  1  Abhydrolase_2  Phospholipase/Carboxylesterase
  ------ inclusion threshold ------
       0.21   10.2   0.0       0.55    8.8   0.0    1.6  2  AXE1           Acetyl xylan esterase (AXE1)


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.4      0.15   6.8e+02      40      73 ..      16      47 ..      14      61 .. 0.74
   2 !  113.0   0.0   3.8e-36   1.7e-32       1     210 [.     147     427 ..     147     428 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.15
                   TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEE CS
  Abhydrolase_3 40 APehpfPaavedalaalrwlaeqawelgadpsri 73
                    Pe++ P a edal a+  +a++a   ++dp+++
     KKY24124.1 16 PPEQQQPPASEDALIAAIKAASNA--PSTDPAHV 47
                   79***********99999999986..34444443 PP

  == domain 2  score: 113.0 bits;  conditional E-value: 3.8e-36
                    EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTH................................. CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqa................................. 63 
                    ++ fHGGGfvlgs   + + c+++++e  avv+svdYr+ P  +fP+a+ d+ ++l+ +++ +                                 
     KKY24124.1 147 VIDFHGGGFVLGSCLEQAPSCAQFCREFSAVVISVDYRMGPIDKFPTAIWDGEDVLKAVLDAEshagralreavktrmeegwqkwakvqdkkekkd 242
                    578*********************************************************99999******************************* PP

                    ......................HHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---............EEEEEEESE-SSTSSTTSHHHHHCHH CS
  Abhydrolase_3  64 ......................welgadpsrivlaGdSaGGnlaaavalrardegepk............vagqvliyPvtdlertesesikkaee 125
                                          ++  +dpsri++ G S GGnla+++ l +++ +                  ++l+yP +d+++  s++ + a+ 
     KKY24124.1 243 ekakrpnppsrsstistlptvqASDILDPSRIAISGFSSGGNLALNLGLDIKQPDLRDpwpsmfppehqfRIPLLLFYPSLDARQLPSQRNRPANM 338
                    *******************97436669*************************986444899****887764556899**99994443444434444 PP

                    TTTSSSSCHHHHHHHHHHHSSGGGGGSTTTSGGGCS-...SST---EEEEEETT-TTHHHHHHHHHHHHH..TT--EEEEEETTEETTGG CS
  Abhydrolase_3 126 ladgplltraaldlfwrlylpeadrddplaspllaed...lsglpptlvvvaefDplrdegeayaerlra..agvevelieyegmvHgfa 210
                      + p++t a  d+++  ylp+++ ++p+asp la+    l   +++l+v  efD l +++e   +++ +   g + e++++ gm Hg+ 
     KKY24124.1 339 PPSSPFWT-AVDDILLPSYLPRQQTEHPRASPGLANAgrsLHPKAKVLLVLPEFDNLAEQAETWVKHVYDagRGSDLEVVKFAGMKHGWT 427
                    48889995.5556889*****************9943234777788**********************9834567999999******985 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.3e-09     1e-05      92     146 ..     118     187 ..     114     191 .. 0.84
   2 ?   -3.8   0.0      0.96   4.3e+03     183     198 ..     270     285 ..     270     286 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2.3e-09
                 EEEESSS.............SSTTSSEEEEEEE--STTTS-BGCG..S-THHHHHHHTSEEEEE----HH CS
  COesterase  92 vytPkek.............keakkklPVlVwihGggfqtgsase..ydgsaLaaegnvivVtinYRlGv 146
                 +++P+ +             +   +klPV++ +hGggf+ gs  e   ++ ++++e++ +v+++ YR+G+
  KKY24124.1 118 IWVPRPEdllikgddvvgisEAVVSKLPVVIDFHGGGFVLGSCLEqaPSCAQFCREFSAVVISVDYRMGP 187
                 777666666788888888777778899***************966568899******************8 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.96
                 EEEEEEEEEETHHHHH CS
  COesterase 183 dpervtlfGesAGaas 198
                 dp+r+ + G s+G+ +
  KKY24124.1 270 DPSRIAISGFSSGGNL 285
                 8************975 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.4e-07     0.002      55     128 ..     220     295 ..     210     299 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.4e-07
                    -GGGTT-EEE-SS-B--SSTTS-B-HH..HHHHHHHHHHHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHT-SS CS
  Abhydrolase_2  55 vtlnggmrmpaWfdlvglspekkedea..gikksaekleelidaelkkgipssriiigGFSqGaalalylaltlpk 128
                    v+  +     +W  +++ +++k e+++    +  +++++ l  ++ +  ++ sri+i GFS G+ lal l+l  ++
     KKY24124.1 220 VKTRMEEGWQKWAKVQDKKEKKDEKAKrpNPPSRSSTISTLPTVQASDILDPSRIAISGFSSGGNLALNLGLDIKQ 295
                    5555555555788888777777443331134456667777777777777********************9998766 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.45     2e+03      81      91 ..     142     152 ..     137     157 .. 0.85
   2 ?    8.8   0.0   0.00012      0.55     162     191 ..     260     289 ..     255     296 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.45
                 SSEEEEEEEE- CS
        AXE1  81 eklPavvefhG 91 
                  klP+v+ fhG
  KKY24124.1 142 SKLPVVIDFHG 152
                 689*******9 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00012
                 HHHHHTSTTEEEEEEEEEEETHHHHHHHHH CS
        AXE1 162 veivaslpevDeeRvavlGasqGGalalav 191
                 +  v++ +  D++R+a+ G s GG lal  
  KKY24124.1 260 LPTVQASDILDPSRIAISGFSSGGNLALNL 289
                 556888999******************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 2810.36
//
Query:       KKY24125.1  [L=788]
Description: hypothetical protein UCRPC4_g02591 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-09   35.9   0.9    7.6e-09   35.9   0.9    4.2  4  Fungal_TACC      Fungal Transforming acidic coiled-coil (TACC
     0.0001   22.0  26.4    0.00078   19.1  26.0    2.3  1  Filament         Intermediate filament protein
      0.004   17.0  13.4      0.004   17.0  13.4    3.5  3  ERM              Ezrin/radixin/moesin family
  ------ inclusion threshold ------
      0.019   15.0  37.3      0.021   14.9  17.3    3.9  4  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
      0.026   13.4  36.8        2.4    6.9   5.2    3.4  2  CALCOCO1         Calcium binding and coiled-coil domain (CALC
       0.03   14.7   7.6      0.049   14.0   1.0    3.2  2  DUF3496          Domain of unknown function (DUF3496)
      0.045   13.9   0.4      0.045   13.9   0.4    4.1  4  DMPK_coil        DMPK coiled coil domain like
      0.058   11.2  32.8     0.0062   14.4   4.3    2.3  2  Myosin_tail_1    Myosin tail
       0.06   13.4  17.8       0.38   10.8   1.4    4.5  4  DUF1664          Protein of unknown function (DUF1664)
      0.073   12.7   0.5       0.16   11.7   0.5    1.5  1  SMP_2            Bacterial virulence factor haemolysin
      0.091   12.1  28.3        1.3    8.3   7.9    3.4  3  DUF4407          Domain of unknown function (DUF4407)
       0.47   11.1  20.2        1.3    9.7   2.5    5.0  5  YabA             Initiation control protein YabA
       0.81    8.5  32.4        1.5    7.7   9.8    3.3  4  Spc7             Spc7 kinetochore protein
       0.94    9.9  16.0        1.9    8.9   0.6    5.1  5  FlaC_arch        Flagella accessory protein C (FlaC)
        1.3    9.1  21.9        0.3   11.2  10.2    3.0  2  UPF0242          Uncharacterised protein family (UPF0242) N-t
        1.6    7.0  29.4       0.94    7.8   7.9    2.7  2  MAD              Mitotic checkpoint protein
        1.8    8.6   7.7        1.5    8.8   0.4    3.7  3  FlxA             FlxA-like protein
        1.9    8.8  22.3      0.043   14.1   2.8    3.9  3  DUF5082          Domain of unknown function (DUF5082)
        2.5    6.8  14.9      0.066   12.0   8.1    1.7  2  AAA_32           AAA domain
        3.5    7.4   6.2         13    5.5   0.0    3.3  5  Bacillus_HBL     Bacillus haemolytic enterotoxin (HBL)
        3.8    6.8  23.7       0.43    9.9   3.5    3.4  3  GAS              Growth-arrest specific micro-tubule binding
        5.1    7.0  28.0        0.3   11.0   0.8    4.5  5  Ax_dynein_light  Axonemal dynein light chain
        5.5    7.1  12.1         25    5.0   0.0    4.6  4  TolA_bind_tri    TolA binding protein trimerisation
          6    6.7  28.8        2.8    7.8   5.7    3.3  2  CEP63            Centrosomal protein of 63 kDa
        6.4    4.6   5.0        7.9    4.3   0.5    2.3  2  Prominin         Prominin
        9.5    6.7  29.5          8    6.9   3.3    5.2  4  Nnf1             Nnf1


Domain annotation for each model (and alignments):
>> Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       3.6   2.5e+03      38      62 ..     369     393 ..     358     413 .. 0.66
   2 ?    0.8   0.0      0.99   6.8e+02      20      61 ..     450     483 ..     445     489 .. 0.57
   3 !   35.9   0.9   1.1e-11   7.6e-09       7      59 ..     519     571 ..     514     577 .. 0.92
   4 ?    4.1   1.5      0.09        62      38      75 ..     612     649 ..     589     651 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 3.6
  Fungal_TACC  38 kkldklelenkslkqeieqLkkqle 62 
                  ++++ l+   ++ + e+  Lkk ++
   KKY24125.1 369 SQISALRATLSGKEAEVSALKKAIT 393
                  4555555555566666666666554 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.99
  Fungal_TACC  20 KHEqKVkllkkgyeakyqkkldklelenkslkqeieqLkkql 61 
                  K E KV+ + k+    ++ + ++le + ++l++       ++
   KKY24125.1 450 KAERKVDEMDKKL-GDWEGRNRELEAQVETLRR-------RV 483
                  5566666665555.5555555555555555544.......44 PP

  == domain 3  score: 35.9 bits;  conditional E-value: 1.1e-11
  Fungal_TACC   7 qelaedLYvqYSsKHEqKVkllkkgyeakyqkkldklelenkslkqeieqLkk 59 
                  +++a +L   Y  KHE+KV+ lkk+yea+++k++++le   k+ ++e+  Lk 
   KKY24125.1 519 ERVARELHALYKGKHETKVAALKKSYEARWEKRVKELEGCLKESQEEVIALKT 571
                  679*************************************9999999999886 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.09
  Fungal_TACC  38 kkldklelenkslkqeieqLkkqleaerkEKqeLlkll 75 
                   +++ le e ++ ++e e ++ +le +r+E  eL+  +
   KKY24125.1 612 ARIQGLESELSATQSESEDVRAELEKQRAENGELVAAV 649
                  56777888888888899999999999999988888765 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1  26.0   1.1e-06   0.00078      22     301 ..     359     661 ..     358     665 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.1e-06
                 XXXXXXXXXXXXXXXXXXX...XXXXXX.XXXX.......XXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  22 aLEqenkeLeakieeleek...ksaevsklkel.......yekeleelr...kqldeltkerarlqleldnlreeledlrkkyekelnkreevEaelka 107
                  LE   ++L ++i++l+ +   k+aevs lk++       + + le++r   ++++ l+++r+  ++ + +++  l+d+++ +   +++ e++E+++ +
  KKY24125.1 359 ELESLRSDLTSQISALRATlsgKEAEVSALKKAiteaevrCGTALEDVRnekAKVEGLESDREAWRARQAEMEGILRDVKQEVLVRTRDAEKAERKVDE 457
                 56666666666666666552222444444443310001113334444441115677777888888888888888888888888888************* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament 108 lrkdldeatlarvdLekkvesLkeelaflkkvheeEvkelqkqvs.eqvlvevdaarkldLteilkeira....qyeelaeknreeaeewykskleelq 201
                 + k+l +   +  +Le++ve+L+  +a   +  +   +   +    + +l++vd+a k   +++ +e+ a    ++e+ ++  +++ e+ ++++++el+
  KKY24125.1 458 MDKKLGDWEGRNRELEAQVETLRRRVAAAAEAASSGPSGDGSVGDvTMRLMDVDSAVKDATERVARELHAlykgKHETKVAALKKSYEARWEKRVKELE 556
                 ****************************99999988777665555799999***9999887777777754222388999******************** PP

                 XXXXXXXXXXXX-HHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHH CS
    Filament 202 eaaeknsealrsakeeitel..rrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireemarqlreYqeLL...dvKlaL 295
                    ++++e++ + k+e   +     + +l+ e+e+ k+  +   ++l+  + +lea ++ l+++ls+ ++e +++r+e+++q  e  eL    dv laL
  KKY24125.1 557 GCLKESQEEVIALKTERDATisAPVMTHLSPEVEKEKERLREAAEHLEADKRMLEARIQGLESELSATQSESEDVRAELEKQRAENGELVaavDVLLAL 655
                 *********9999988665411567999*******************999***********************************999954449999*9 PP

                 HHHHHH CS
    Filament 296 diEIat 301
                   E +t
  KKY24125.1 656 QDELNT 661
                 999987 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.6       3.7   2.5e+03      87     179 ..      64      77 ..      21     162 .. 0.57
   2 ?    4.9  13.2     0.029        20      51     168 ..     359     478 ..     355     491 .. 0.76
   3 !   17.0  13.4   5.8e-06     0.004      30     147 ..     547     677 ..     503     726 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.7
         ERM  87 aeleaarleeeserkeeeaerLkeeleeareaeeeakekllealstpskseseenveeseteeeeenseeesaeletdeveklsleieeeRvt 179
                  e                                                                                 +   e++R t
  KKY24125.1  64 DEIV-------------------------------------------------------------------------------ESTYETSRET 77 
                 2222...............................................................................2222222211 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.029
         ERM  51 lLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeserkeeeaerLkeeleeareaeeeakekllealstpsks...eseenveese 146
                 +Le  +++++ +i++l+ + + +e+e ++l++ ++eae +  +  e++++ ++++e L+++ e+ r+++ e++  l+++ ++   +    ++++ + +e
  KKY24125.1 359 ELESLRSDLTSQISALRATLSGKEAEVSALKKAITEAEVRCGTALEDVRNEKAKVEGLESDREAWRARQAEMEGILRDVKQEVLVRtrdAEKAERKVDE 457
                 799999*******************************************************99999999999988887777765442211122333333 PP

         ERM 147 teeeeenseeesaeletdevek 168
                  +++  + e ++ ele++ ve 
  KKY24125.1 458 MDKKLGDWEGRNRELEAQ-VET 478
                 333334444467777766.444 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 5.8e-06
         ERM  30 eseetaelLaekarraeeeaelLeqkaaea.............eeeiqrlkesaekeeeekeklerklreaeleaarleeeserkeeeaerLke...el 112
                 + e+++++L+  +++++ee   L+ ++ +              e+e++rl+e+ae  e+ k+ le++++  e+e++  ++ese   +e e+ ++   el
  KKY24125.1 547 RWEKRVKELEGCLKESQEEVIALKTERDATisapvmthlspevEKEKERLREAAEHLEADKRMLEARIQGLESELSATQSESEDVRAELEKQRAengEL 645
                 4455666666666666666666666665555566665555555*************************9999999999999998666666665522458 PP

         ERM 113 eeareaeeeakekllealstpskseseenveeset 147
                  +a + +   + +l +a++++++++s   +++s+t
  KKY24125.1 646 VAAVDVLLALQDELNTATTREQPNTS---SKTSTT 677
                 88888888888999999998854322...222222 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1       0.5   3.5e+02      56      80 ..     366     390 ..     358     399 .. 0.59
   2 ?    6.0   8.2     0.016        11      26     124 ..     385     483 ..     381     492 .. 0.80
   3 ?    1.8   1.7      0.32   2.2e+02      22      83 ..     514     574 ..     510     579 .. 0.70
   4 ?   14.9  17.3     3e-05     0.021       1     105 [.     548     651 ..     548     689 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.5
  CENP-F_leu_zip  56 tlkeeieelaeelreleldLvalrs 80 
                      l ++i  l+++l+  e++++al++
      KKY24125.1 366 DLTSQISALRATLSGKEAEVSALKK 390
                     3555666666666666666666554 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.016
  CENP-F_leu_zip  26 venLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqekvqm 120
                     v +L++ + ++e     +  ++ ++ka+ve+l++  e  +++  e+e  L ++++e    +++ +k  ++v+e+++   + e   +e+E++   +
      KKY24125.1 385 VSALKKAITEAEVRCGTALEDVRNEKAKVEGLESDREAWRARQAEMEGILRDVKQEVLVRTRDAEKAERKVDEMDKKLGDWEGRNRELEAQVETL 479
                     67777888888888888899999******************999999999999988888888888888888888888888888888888775555 PP

  CENP-F_leu_zip 121 kees 124
                     + + 
      KKY24125.1 480 RRRV 483
                     4444 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.32
  CENP-F_leu_zip  22 LkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrseke 83 
                     +kd  e+  rel  + + + ++++ a ++  e+   ++ ++el+  l+e + ++ al+ e++
      KKY24125.1 514 VKDATERVARELHALYKGKHETKVAALKKSYEA-RWEKRVKELEGCLKESQEEVIALKTERD 574
                     677777777777777777777776665444443.4677788888888888888888888876 PP

  == domain 4  score: 14.9 bits;  conditional E-value: 3e-05
  CENP-F_leu_zip   1 DekkklhvlekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqer 95 
                     +ek+ +++++ LKes+++   Lk   ++  +   m   +  +v+ e+E  ++++e l++ +++l+++ + le++L+a++se e++  el+k++ +
      KKY24125.1 548 WEKRVKELEGCLKESQEEVIALKTERDATISAPVMTHLS-PEVEKEKERLREAAEHLEADKRMLEARIQGLESELSATQSESEDVRAELEKQRAE 641
                     899999999*******99999987544444444444333.3456666666778888*************************************99 PP

  CENP-F_leu_zip  96 vseLeslnss 105
                       eL ++   
      KKY24125.1 642 NGELVAAVDV 651
                     8888666544 PP

>> CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.2    0.0035       2.4     189     269 ..     366     446 ..     354     452 .. 0.80
   2 ?    4.4  27.5     0.021        14      44     235 ..     440     672 ..     437     698 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0035
    CALCOCO1 189 slskelqelrnslaerdtqvlqLqdtittltqkLttAqrkeaenEallkelrslqerlaaSerkvegLkeeLssvaaqrdr 269
                  l++++  lr +l  ++++v  L++ it+ + +  tA   + ++ a  + l s +e   a + + eg+ ++ ++ +  r r
  KKY24125.1 366 DLTSQISALRATLSGKEAEVSALKKAITEAEVRCGTALEDVRNEKAKVEGLESDREAWRARQAEMEGILRDVKQEVLVRTR 446
                 355666789*****************************999999999999*****************99999875544433 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.021
    CALCOCO1  44 aeLlqaqeaanrqrekekeeykrdreeldrerkelesrveelkeelkesre............................................kvee 98 
                 + L+++++a + +r  +  e+ ++  +++ + +ele +ve l++ ++ + e                                            + ++
  KKY24125.1 440 EVLVRTRDAEKAERKVD--EMDKKLGDWEGRNRELEAQVETLRRRVAAAAEaassgpsgdgsvgdvtmrlmdvdsavkdatervarelhalykgkHETK 536
                 56777777777666666..45556789*****************9999999999999999999999999998888887777777777777777753334 PP

    CALCOCO1  99 leekqkelerlseelaeeksalleakeesearir.ELEeDikt..ltqralekEteLeRlkerakkalaqrkeeeaerkqlqakleqseeelrslskel 194
                 +++ +k  e+  e+  +e +  l++++e++  ++ E +  i +  +t+ + e E e eRl+e a+++ a ++  ea  + l+++l+++++e++ + +el
  KKY24125.1 537 VAALKKSYEARWEKRVKELEGCLKESQEEVIALKtERDATISApvMTHLSPEVEKEKERLREAAEHLEADKRMLEARIQGLESELSATQSESEDVRAEL 635
                 444444444433333333333333333334334303333333233677777778888899999999999999999999999999999999999999999 PP

    CALCOCO1 195 qelrnslaerdtqv...lqLqdtittltqkLttAqrkeaenEal 235
                 ++ r    e  + v   l Lqd+++t       A  +e  n ++
  KKY24125.1 636 EKQRAENGELVAAVdvlLALQDELNT-------ATTREQPNTSS 672
                 98888888877665222445555555.......44444433333 PP

>> DUF3496  Domain of unknown function (DUF3496)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   1.2      0.23   1.6e+02      18      69 ..     559     607 ..     546     609 .. 0.79
   2 ?   14.0   1.0   7.1e-05     0.049       3      36 ..     609     641 ..     607     684 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.23
     DUF3496  18 mKtsqedsnkteLEkykqlyleelkvrksLsnklnktnerLaevstkllvek 69 
                 +K sqe++  + L++ + + + +  v + Ls +++k++erL e+   l   k
  KKY24125.1 559 LKESQEEV--IALKTERDATI-SAPVMTHLSPEVEKEKERLREAAEHLEADK 607
                 58888888..88888888877.66788999*************998887766 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 7.1e-05
     DUF3496   3 qmElrikdLeselskmKtsqedsnkteLEkykql 36 
                  +E ri+ Lesels +++  ed+ ++eLEk +  
  KKY24125.1 609 MLEARIQGLESELSATQSESEDV-RAELEKQRAE 641
                 579********************.******8754 PP

>> DMPK_coil  DMPK coiled coil domain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       6.2   4.3e+03      36      41 ..     394     399 ..     381     426 .. 0.52
   2 ?   13.9   0.4   6.6e-05     0.045      30      55 ..     458     483 ..     420     487 .. 0.90
   3 ?   -2.6   0.3       8.9   6.2e+03      31      49 ..     549     567 ..     535     573 .. 0.56
   4 ?   -0.7   4.4       2.2   1.5e+03      19      61 .]     592     634 ..     587     651 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 6.2
   DMPK_coil  36 eaEkkn 41 
                 eaE++ 
  KKY24125.1 394 EAEVRC 399
                 333333 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 6.6e-05
   DMPK_coil  30 feskLkeaEkknreLeeeleqLkkem 55 
                 ++ kL + E +nreLe+++e L++++
  KKY24125.1 458 MDKKLGDWEGRNRELEAQVETLRRRV 483
                 5789*******************986 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 8.9
   DMPK_coil  31 eskLkeaEkknreLeeele 49 
                 e + ke E   +e +ee+ 
  KKY24125.1 549 EKRVKELEGCLKESQEEVI 567
                 3444444444444444444 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 2.2
   DMPK_coil  19 eLekvkaanlafeskLkeaEkknreLeeeleqLkkemEelrar 61 
                 e e+ ++a  + e   +  E++ + Le+el   + e E +ra+
  KKY24125.1 592 EKERLREAAEHLEADKRMLEARIQGLESELSATQSESEDVRAE 634
                 5556666666666666667888888888888888888888875 PP

>> Myosin_tail_1  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   4.3     9e-06    0.0062     219     301 ..     359     441 ..     356     446 .. 0.94
   2 ?    1.0  22.0     0.099        68     365     552 ..     448     647 ..     439     688 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9e-06
  Myosin_tail_1 219 dlqeqiadlqaqieelraqlakkeeelqaalarleeeaaqknaalkklreleaqlaelqedlesekaaRakaekqrrdLgeeL 301
                    +l+   +dl  qi+ lra l+ ke e+ a+ + + e   +  +al  +r+ +a++  l+ d e+ +a +a  e   rd+++e+
     KKY24125.1 359 ELESLRSDLTSQISALRATLSGKEAEVSALKKAITEAEVRCGTALEDVRNEKAKVEGLESDREAWRARQAEMEGILRDVKQEV 441
                    6667779***********************************************************************99985 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.099
  Myosin_tail_1 365 leqakrskaslekakqaLesenkelqaelkslqq...akqdseqkrkkleaqlqelqvklseserqreelaekvsklqaelesvsslleea...eg 454
                     e+a r+  +++k     e  n+el+a++++l+    a +++ +     ++ + ++ ++l + + + ++++e+v++    l + ++  + a    +
     KKY24125.1 448 AEKAERKVDEMDKKLGDWEGRNRELEAQVETLRRrvaAAAEAASSGPSGDGSVGDVTMRLMDVDSAVKDATERVARELHALYKGKHETKVAalkKS 543
                    577888888999999999999999999999997521144555666677899999999999999999999999999887777655444433301134 PP

  Myosin_tail_1 455 ksiklskdvsslesqlqDtqe.llqeetrqkLalssrlr.....qleeeknalkeqleeeeeakknvekqlstlqaqlsdlkkkleeeasaveale 544
                     + + +k v++le  l++ qe +    t +  ++s+ +      ++e+ek+ l+e  e  e  k+ +e +++ l+++ls ++   e+  + +e+  
     KKY24125.1 544 YEARWEKRVKELEGCLKESQEeVIALKTERDATISAPVMthlspEVEKEKERLREAAEHLEADKRMLEARIQGLESELSATQSESEDVRAELEKQR 639
                    457888999999999999887334445555555554443112237899999999999999999999999999999999999999999998888765 PP

  Myosin_tail_1 545 eakkrlqr 552
                     +   l  
     KKY24125.1 640 AENGELVA 647
                    55444444 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.2    0.0034       2.4      56     116 ..     359     419 ..     354     427 .. 0.92
   2 ?    2.2   0.2      0.26   1.8e+02      65      96 ..     452     483 ..     433     490 .. 0.59
   3 ?    0.6   0.3      0.82   5.6e+02      39      93 ..     514     570 ..     503     579 .. 0.64
   4 ?   10.8   1.4   0.00055      0.38      43      99 ..     589     645 ..     581     663 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0034
     DUF1664  56 slaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesk 116
                 +l++ + +L+s+i  + ++l   ++  +++k+ +te++    +  edv++ k+ vegles 
  KKY24125.1 359 ELESLRSDLTSQISALRATLSGKEAEVSALKKAITEAEVRCGTALEDVRNEKAKVEGLESD 419
                 688999****************************************************985 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.26
     DUF1664  65 ssridrvdkkldeqkeiskeikeevtevredl 96 
                 ++++d++dkkl + +   +e++++v+++r+ +
  KKY24125.1 452 ERKVDEMDKKLGDWEGRNRELEAQVETLRRRV 483
                 34555666666666666666666665555555 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.82
     DUF1664  39 lsdavesvskqleqvs.....eslaatkrhLssridrvdkkldeqkeiskeikeevtevr 93 
                  +da e+v+++l  ++     +++aa k+  ++r ++  k   e + + ke +eev +++
  KKY24125.1 514 VKDATERVARELHALYkgkheTKVAALKKSYEARWEKRVK---ELEGCLKESQEEVIALK 570
                 5789999999999998444444555555555555544444...44444455555665555 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.00055
     DUF1664  43 vesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlsei 99 
                 ve+  ++l +  e+l+a kr L++ri+ ++++l +++  s+++++e+++ r +  e+
  KKY24125.1 589 VEKEKERLREAAEHLEADKRMLEARIQGLESELSATQSESEDVRAELEKQRAENGEL 645
                 555667899999*********************************999887766555 PP

>> SMP_2  Bacterial virulence factor haemolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.5   0.00023      0.16      60     121 ..     585     644 ..     569     667 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00023
       SMP_2  60 lskllvdnakeeklkelldqltkeslvlDAsvYskdGellAqseealelrdrlaldgkkags 121
                 ls+ ++++  +e+l e+ ++l  ++++l A +   + el A  +e+ ++r  l+ +  ++g+
  KKY24125.1 585 LSPEVEKE--KERLREAAEHLEADKRMLEARIQGLESELSATQSESEDVRAELEKQRAENGE 644
                 45555444..57****************************************9998887664 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   7.9    0.0019       1.3     135     214 ..     364     478 ..     333     497 .. 0.44
   2 ?    1.8   4.5      0.18   1.2e+02     119     221 ..     448     546 ..     435     556 .. 0.43
   3 ?    5.6  12.5     0.012       8.5     113     250 ..     530     659 ..     521     716 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0019
     DUF4407 135 laeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaake............................kkaqldaaqaelaelkak 205
                  ++l++qi+al+a+++ +ea+++al+++ + e++  +gt  + v+ + +  +                             +++++++a+++++e+++k
  KKY24125.1 364 RSDLTSQISALRATLSGKEAEVSALKKAIT-EAEVRCGTALEDVRNEKAKVEGlesdreawrarqaemegilrdvkqevlvRTRDAEKAERKVDEMDKK 461
                 334444444444444444444444444333.44444444433333333333331111111111223333333333335555445555555555555555 PP

     DUF4407 206 ld........atarlaa 214
                 l          +a++++
  KKY24125.1 462 LGdwegrnreLEAQVET 478
                 33322221122222222 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.18
     DUF4407 119 eakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaake...........kkaqldaaqaelaelkakl 206
                 ++         +++ +++e+++++ ++++  +++ea++++lr+ +++ ++   ++g     G+g + +            k+a    a++  a +k+k 
  KKY24125.1 448 AE---------KAERKVDEMDKKLGDWEGRNRELEAQVETLRRRVAAAAEA-ASSG---PSGDGSVGDVtmrlmdvdsavKDATERVARELHALYKGK- 532
                 22.........2455555555555555555555555555555555544443.2333...333333333222233332232222222222233333333. PP

     DUF4407 207 datarlaalraelae 221
                   ++++aal++ ++ 
  KKY24125.1 533 -HETKVAALKKSYEA 546
                 .66666666666665 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.012
     DUF4407 113 aeeqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaq.keldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldata 210
                 + +++ ++++lk++++a ++++++ele  +++ q+e+ a+++++da+  +    +l+++  ++   +++  +aa++ +a+   ++a+++        ++
  KKY24125.1 530 KGKHETKVAALKKSYEARWEKRVKELEGCLKESQEEVIALKTERDATISAPVmTHLSPEVEKE---KERLREAAEHLEADKRMLEARIQG------LES 619
                 567888888888888888888888888888888888888888888876654403333322222...223333333333333333333333......333 PP

     DUF4407 211 rlaalraelaeleaerakeraasqaaaaaddGllarleal 250
                 +l+a ++e ++++ae++k+ra++ +  aa d lla  + l
  KKY24125.1 620 ELSATQSESEDVRAELEKQRAENGELVAAVDVLLALQDEL 659
                 3444444444444444444444444444333333333333 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.3       1.9   1.3e+03      28      64 ..      46      82 ..      35     103 .. 0.66
   2 ?    1.6   0.0      0.63   4.4e+02       4      34 ..     365     395 ..     363     432 .. 0.83
   3 ?    7.6   0.0    0.0085       5.8      15      59 ..     446     490 ..     430     534 .. 0.78
   4 ?    1.5   1.3      0.65   4.5e+02       8      58 ..     550     602 ..     535     612 .. 0.67
   5 ?    9.7   2.5    0.0019       1.3       2      63 ..     606     674 ..     605     689 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 1.9
                HHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXX CS
        YabA 28 keelaelleenaeLeleneklrerleeeekkekekkk 64
                 ++++++ + n ++++ n+++ e   e+++++++ + 
  KKY24125.1 46 TSSVKTTSKSNLTMTIHNDEIVESTYETSRETTSGND 82
                5677888899999999999998888333333322222 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.63
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA   4 kelfdkleeleeqleelleeleelkeelael 34 
                 ++l++++++l  +l+   +e+++lk++++e 
  KKY24125.1 365 SDLTSQISALRATLSGKEAEVSALKKAITEA 395
                 6899999999999999999999999999875 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0085
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXX CS
        YabA  15 eqleelleeleelkeelaelleenaeLeleneklrerleeeekke 59 
                 ++ e+  ++++e+ ++l +   +n+eLe++ e+lr+r++ + +++
  KKY24125.1 446 RDAEKAERKVDEMDKKLGDWEGRNRELEAQVETLRRRVAAAAEAA 490
                 567888999*****************************4444333 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.65
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHXXXXXX CS
        YabA   8 dkleeleeqleelleeleelkeelaellee..naeLeleneklrerleeeekk 58 
                 ++++ele  l+e +ee+ +lk+e  +++     ++L+ e ek +erl+e+ ++
  KKY24125.1 550 KRVKELEGCLKESQEEVIALKTERDATISApvMTHLSPEVEKEKERLREAAEH 602
                 57888888888888888888888777766522456666666666666444333 PP

  == domain 5  score: 9.7 bits;  conditional E-value: 0.0019
                 -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......XXXXXXXXXXX CS
        YabA   2 dkkelfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerl.......eeeekkekekk 63 
                 dk+ l ++++ le++l+++++e e++++el++   en eL +  + l  ++       ++e+ ++++k+
  KKY24125.1 606 DKRMLEARIQGLESELSATQSESEDVRAELEKQRAENGELVAAVDVLLALQdelntatTREQPNTSSKT 674
                 7899999**********************************9988776666444443322222222222 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.6    0.0027       1.9     192     258 ..     351     414 ..     333     427 .. 0.83
   2 ?    5.2  10.2     0.012       8.1     137     258 ..     360     484 ..     358     492 .. 0.80
   3 ?    2.3   8.1      0.09        62     136     275 ..     429     573 ..     422     586 .. 0.80
   4 ?    7.7   9.8    0.0021       1.5     141     232 ..     593     687 ..     585     703 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0027
        Spc7 192 elesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervle 258
                 ++ +i++ eLe+lr++l+++ + +   ++ l+ +++++ +l+++i+e++ ++ ++ e++++++  +e
  KKY24125.1 351 SVPTITPRELESLRSDLTSQISAL---RATLSGKEAEVSALKKAITEAEVRCGTALEDVRNEKAKVE 414
                 567789999999999998875555...5999999999999999999999999999999988776554 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.012
        Spc7 137 legLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles..idkeeLeelree....laelkaeieekkkelaelqeql 229
                 le+L++ l++++++l+   ++L+ +e+e+++l+++++e + +    le+ +++++++e   +d+e  ++ + e    l+++k+e+  + ++ ++ ++++
  KKY24125.1 360 LESLRSDLTSQISALR---ATLSGKEAEVSALKKAITEAEVRCGTALEDVRNEKAKVEGleSDREAWRARQAEmegiLRDVKQEVLVRTRDAEKAERKV 455
                 5667777777777665...789999*************9999999999999999999984344444443333344448899999999************ PP

        Spc7 230 eeleekieelkeqkseleeeiaeaervle 258
                 +e ++k+ + + + +ele++++  +r + 
  KKY24125.1 456 DEMDKKLGDWEGRNRELEAQVETLRRRVA 484
                 *******************9999888765 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.09
        Spc7 136 llegLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles......idkeeLeelreelaelkaeieekkkelaelqeq 228
                  +eg+   +++++   ++d+e+ e++ +e+d+ l + e +  ele+++e+l+++++  ++      +   ++  +  +l ++++ ++   +++a+    
  KKY24125.1 429 EMEGILRDVKQEVLVRTRDAEKAERKVDEMDKKLGDWEGRNRELEAQVETLRRRVAAAAEaassgpSGDGSVGDVTMRLMDVDSAVKDATERVARELHA 527
                 478888888888888899999999999999999999999999999999999995444443444666668899999999999999999777777766666 PP

        Spc7 229 leeleekieelkeqkseleeeiaeaervleeckgwsesevsrlkeev 275
                 l + + +  ++++ k+++e++ ++  + le c + s++ev +lk+e 
  KKY24125.1 528 LYKGKHET-KVAALKKSYEARWEKRVKELEGCLKESQEEVIALKTER 573
                 65555554.66788999999999999999999999999999999875 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0021
        Spc7 141 kegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelka....eieekkkelaelqeqleel 232
                 ke+l+e  e le+dk++Le++ + l++ l ++++e +++++elek+++++ el +   + L +l++el+++ +    + ++k   +++lq+++++l
  KKY24125.1 593 KERLREAAEHLEADKRMLEARIQGLESELSATQSESEDVRAELEKQRAENGELVA-AVDVLLALQDELNTATTreqpNTSSKTSTTSTLQSNIDNL 687
                 6778888888888888888888888888888888888888888888886666544.3445555555555443300002333333444444444444 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2      0.44     3e+02       5      37 ..     360     392 ..     358     397 .. 0.62
   2 ?    6.7   0.1     0.014       9.5       6      37 ..     452     483 ..     449     487 .. 0.74
   3 ?   -1.8   0.1         6   4.2e+03       1      19 [.     551     569 ..     532     575 .. 0.67
   4 ?    8.9   0.6    0.0028       1.9       1      42 [.     613     654 ..     608     657 .. 0.73
   5 ?   -1.7   0.0       5.8     4e+03      14      31 ..     675     692 ..     668     693 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.44
   FlaC_arch   5 lEnklsklsteletvkkeneelsksveelkenV 37 
                 lE+  s+l ++++ ++++++  + +v  lk+ +
  KKY24125.1 360 LESLRSDLTSQISALRATLSGKEAEVSALKKAI 392
                 555556666666666666666666666666655 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.014
   FlaC_arch   6 EnklsklsteletvkkeneelsksveelkenV 37 
                 E k+++++ +l+  +  n el+ +ve+l ++V
  KKY24125.1 452 ERKVDEMDKKLGDWEGRNRELEAQVETLRRRV 483
                 77777777788888888888888888777766 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 6
   FlaC_arch   1 ridelEnklsklsteletv 19 
                 r++elE  l++ + e+  +
  KKY24125.1 551 RVKELEGCLKESQEEVIAL 569
                 5666666666655555555 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.0028
   FlaC_arch   1 ridelEnklsklsteletvkkeneelsksveelkenVkdlls 42 
                 ri+ lE++ls +++e e v++e+e+ + +  el   V  ll+
  KKY24125.1 613 RIQGLESELSATQSESEDVRAELEKQRAENGELVAAVDVLLA 654
                 677788888888887777777777777777777777776666 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 5.8
   FlaC_arch  14 teletvkkeneelsksve 31 
                 ++ +t+++++++l+ s++
  KKY24125.1 675 STTSTLQSNIDNLRGSIH 692
                 467899999999988876 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   3.4      0.18   1.2e+02      81     128 ..     396     478 ..     363     492 .. 0.50
   2 ?   11.2  10.2   0.00044       0.3      81     179 ..     549     649 ..     515     661 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.18
     UPF0242  81 d.......eglktkeealeelqeeeeeLkee............................ldakeeelerlkeenqqLqeklea 128
                 +       e++++++ ++e l+++ e  + +                            +d+++++l   + +n +L+ + e 
  KKY24125.1 396 EvrcgtalEDVRNEKAKVEGLESDREAWRARqaemegilrdvkqevlvrtrdaekaerkVDEMDKKLGDWEGRNRELEAQVET 478
                 44444444455555555555554444444442222222222222222222222222222666666666666666666666555 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00044
     UPF0242  81 deglktkeealeelqeeeeeLkee......ldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekqellqeyqetieeqrsvlekrqdqie 173
                 ++ +k+ e  l+e+qee   Lk e         +++++ + ++e++ L+    ++ae  e+ k+ le++++  +  l+  q + e+ r++lek+ ++++
  KKY24125.1 549 EKRVKELEGCLKESQEEVIALKTErdatisAPVMTHLSPEVEKEKERLR----EAAEHLEADKRMLEARIQGLESELSATQSESEDVRAELEKQRAENG 643
                 2556777778888888888888885555444556666666666666666....5566689999999999999999999999999999999999999999 PP

     UPF0242 174 qLeskV 179
                 +L + V
  KKY24125.1 644 ELVAAV 649
                 997766 PP

>> MAD  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.9    0.0014      0.94      35     158 ..     363     486 ..     357     523 .. 0.84
   2 ?    4.5  12.6     0.014       9.4     153     257 ..     535     640 ..     505     649 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0014
         MAD  35 kasalkrqleeesdrnqelqkrikllekreeekeealreqiElarlkkknlealnkkekekesklaearevisalknelaelkrqiekqelelsekese 133
                   s+l  q+   ++     ++++++l+k  +e+e  +   +E +r  k + e l++  +   +++ae++ + + +k+e+  + r +ek+e ++ e +++
  KKY24125.1 363 LRSDLTSQISALRATLSGKEAEVSALKKAITEAEVRCGTALEDVRNEKAKVEGLESDREAWRARQAEMEGILRDVKQEVLVRTRDAEKAERKVDEMDKK 461
                 5555666666666666667889999999999**************999999999999999999************************************ PP

         MAD 134 leelqerldllkkklseleqliqql 158
                 l + + r+ +l+++++ l ++++  
  KKY24125.1 462 LGDWEGRNRELEAQVETLRRRVAAA 486
                 **99999999999999888887554 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.014
         MAD 153 qliqqlekkqkelaeaeqrikeLefeiqsqeddslivknskselaripelekelerlreenkklne....lkenkelLkEevedlkkkLereEkareel 247
                  +++ l+k+    a  e+r+keLe  +++ +++ + +k+ ++   + p + ++  + ++e ++l+e    l+ +k +L+  +++l++ L+ +     e 
  KKY24125.1 535 TKVAALKKS--YEARWEKRVKELEGCLKESQEEVIALKTERDATISAPVMTHLSPEVEKEKERLREaaehLEADKRMLEARIQGLESELSATQSES-ED 630
                 444444433..3455678888888888888888888888888777666554444444444444444111123577888888888888887664443.34 PP

         MAD 248 vkLelekekl 257
                 v  elek++ 
  KKY24125.1 631 VRAELEKQRA 640
                 5556666655 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       3.1   2.1e+03      52      66 ..     365     379 ..     354     397 .. 0.55
   2 ?    8.8   0.4    0.0022       1.5      41      82 ..     597     638 ..     581     649 .. 0.64
   3 ?    1.0   0.7       0.6   4.1e+02       5      32 ..     663     690 ..     654     701 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.1
        FlxA  52 qliqaQIqqlqaQIa 66 
                   + +QI++l+a + 
  KKY24125.1 365 SDLTSQISALRATLS 379
                 444455555554443 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0022
        FlxA  41 eltkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaqekqqs 82 
                  + +e  ++ + +++a Iq l++++   q++ ++ ++e +++
  KKY24125.1 597 REAAEHLEADKRMLEARIQGLESELSATQSESEDVRAELEKQ 638
                 344455557778888888888888888888877666654444 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.6
        FlxA   5 sasssssssgsasqiasLqkQiknlqkq 32 
                 ++ ++ ++s+ +s +++Lq  i+nl  +
  KKY24125.1 663 TTREQPNTSSKTSTTSTLQSNIDNLRGS 690
                 4445555566666666677766666544 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   2.8   6.3e-05     0.043       5      94 ..     364     456 ..     360     484 .. 0.81
   2 ?   -2.2   0.1       6.7   4.6e+03       8      25 ..     548     565 ..     506     580 .. 0.55
   3 ?    0.9   7.8      0.76   5.2e+02      25     121 ..     592     687 ..     587     689 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.3e-05
     DUF5082   5 isklqaqiaelrseiaaleekIerLk....eaktklsdekeslkqkkkklekplnssesWkGkeennydgirsnlessyqtyvdkldelidaie 94 
                 +s+l +qi+ lr+++++ e  ++ Lk    ea  +  ++ e + ++k k+e+ + + e+W+ +++ + +gi++++++++    ++ ++++++++
  KKY24125.1 364 RSDLTSQISALRATLSGKEAEVSALKkaitEAEVRCGTALEDVRNEKAKVEGLESDREAWRARQA-EMEGILRDVKQEVLVRTRDAEKAERKVD 456
                 899***********************7777777788899*********************98765.6789999999998766666666665554 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 6.7
     DUF5082   8 lqaqiaelrseiaaleek 25 
                  ++++ el++ ++  +e 
  KKY24125.1 548 WEKRVKELEGCLKESQEE 565
                 233333333333333333 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.76
     DUF5082  25 kIerLkeaktklsdekeslkqkkkklekplnssesWkGkeennydgirsnlessyqtyvdkldelidaieeEIerLenqiseaqgvldtlqsqlnsl 121
                   erL+ea ++l++ k  l++ ++ le  l  ++s     +++ + +r++  + + + vd l +l+d++++ ++r +   s++++  +tlqs++++l
  KKY24125.1 592 EKERLREAAEHLEADKRMLEARIQGLESELSATQSESEDVRAELEKQRAENGELV-AAVDVLLALQDELNTATTREQPNTSSKTSTTSTLQSNIDNL 687
                 4478888888888888888888888877777776655555555555555444444.44567777888888888888888888888888888888877 PP

>> AAA_32  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.5       2.1   1.4e+03     243     243 ..     435     435 ..     349     487 .. 0.48
   2 ?   12.0   8.1   9.6e-05     0.066      93     218 ..     514     641 ..     508     658 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.1
      AAA_32 243 e 243
                 +
  KKY24125.1 435 R 435
                 2 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 9.6e-05
      AAA_32  93 meelveelkkeipkafeseeYeerkeeieeefeekeeelleele...keaeekgfalkrtpegivlvPlk.dgkplseeefealpeeerkeleekseel 187
                 ++++ e++ +e+ + + + ++e++ +++++++e++ e+ ++ele   ke +e+ +alk++ + +  +P++ + +p  e+e e+l +e  ++le++++ l
  KKY24125.1 514 VKDATERVARELHA-LYKGKHETKVAALKKSYEARWEKRVKELEgclKESQEEVIALKTERDATISAPVMtHLSPEVEKEKERL-REAAEHLEADKRML 610
                 55666666777665.556689**********************9666788889999*999999******834455555555555.66778888999999 PP

      AAA_32 188 eeeleeilrelrelekeakeklkelerevak 218
                 e +++ + +el   ++e ++  +ele++ a+
  KKY24125.1 611 EARIQGLESELSATQSESEDVRAELEKQRAE 641
                 9999999999999998888888888888765 PP

>> Bacillus_HBL  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.019        13     139     170 ..     364     395 ..     358     399 .. 0.88
   2 ?   -2.1   0.0       4.2   2.9e+03     116     174 ..     425     483 ..     406     485 .. 0.76
   3 ?   -3.1   0.1       8.5   5.8e+03      96     123 ..     541     568 ..     526     572 .. 0.71
   4 ?    3.5   0.1     0.081        56     121     169 ..     589     637 ..     579     644 .. 0.68
   5 ?   -3.0   0.1       7.8   5.4e+03     156     174 ..     673     691 ..     648     694 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.019
  Bacillus_HBL 139 sknFktdvdeltsilagdsgvisqlqneiedl 170
                    ++++++++ l ++l+g+++++s+l+++i+++
    KKY24125.1 364 RSDLTSQISALRATLSGKEAEVSALKKAITEA 395
                   57899999*********************986 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.2
  Bacillus_HBL 116 qnqkevkqlikeLkklklklakdsknFktdvdeltsilagdsgvisqlqneiedlqgki 174
                     q+e++  + ++k+  l  + d ++ + +vde+++ l+  +g   +l++++e+l+  +
    KKY24125.1 425 ARQAEMEGILRDVKQEVLVRTRDAEKAERKVDEMDKKLGDWEGRNRELEAQVETLRRRV 483
                   56777777777777777777888888889999999999999999999999998887765 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 8.5
  Bacillus_HBL  96 dkkdkaellellekLqeeiqqnqkevkq 123
                   +k   a + +++++L+  + + q+ev +
    KKY24125.1 541 KKSYEARWEKRVKELEGCLKESQEEVIA 568
                   6666777888888888888888887754 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.081
  Bacillus_HBL 121 vkqlikeLkklklklakdsknFktdvdeltsilagdsgvisqlqneied 169
                   v++  + L++ +++l++d++ +++ ++ l+s l++++ + +++++e+e+
    KKY24125.1 589 VEKEKERLREAAEHLEADKRMLEARIQGLESELSATQSESEDVRAELEK 637
                   5566666666777777777777777777777777777776666666665 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 7.8
  Bacillus_HBL 156 dsgvisqlqneiedlqgki 174
                   +  + s+lq +i +l+g+i
    KKY24125.1 673 KTSTTSTLQSNIDNLRGSI 691
                   3344455555555555555 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.6    0.0066       4.5      27     129 ..     363     462 ..     354     488 .. 0.83
   2 ?   -0.7   0.5       1.1   7.4e+02      52      74 ..     548     570 ..     511     579 .. 0.55
   3 ?    9.9   3.5   0.00063      0.43      66     125 ..     589     645 ..     581     696 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0066
         GAS  27 lIkslKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdel 125
                 l   l ++i  l++    +e e+s++++   + +    +a e+v + +++++  e+d+++    +ar  e+e  l+d+k+e  v     ek+e++ de+
  KKY24125.1 363 LRSDLTSQISALRATLSGKEAEVSALKKAITEAEVRCGTALEDVRNEKAKVEGLESDREA---WRARQAEMEGILRDVKQEVLVRTRDAEKAERKVDEM 458
                 445688889999999999999999999999999999999999999999999999998885...578888999999999999999999999999999999 PP

         GAS 126 ykkf 129
                  kk 
  KKY24125.1 459 DKKL 462
                 8875 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.1
         GAS  52 isqenkrlkepLkkaeeeveeLr 74 
                  +++ k+l+  Lk+ +eev  L+
  KKY24125.1 548 WEKRVKELEGCLKESQEEVIALK 570
                 22333333333444444443333 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00063
         GAS  66 aeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdel 125
                 +e+e+e+Lr+++++ e dk     l+ar++ le+el++++ e+e ++ ++ek  +e  el
  KKY24125.1 589 VEKEKERLREAAEHLEADKRM---LEARIQGLESELSATQSESEDVRAELEKQRAENGEL 645
                 455666666666666665543...345666666666666666666666666555555554 PP

>> Ax_dynein_light  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       5.9   4.1e+03     108     157 ..      29      78 ..      17      92 .. 0.61
   2 ?    0.7   0.4      0.64   4.4e+02     132     162 ..     382     412 ..     360     432 .. 0.46
   3 ?   11.0   0.8   0.00044       0.3     110     154 ..     444     488 ..     435     493 .. 0.88
   4 ?    1.1   0.5      0.48   3.3e+02      96     149 ..     522     573 ..     508     580 .. 0.55
   5 ?    9.8   3.6   0.00099      0.69     117     170 ..     589     642 ..     581     658 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.9
  Ax_dynein_light 108 aFgmrkalqaeqgkselekkikeLeeekeelekqvaelkaklealekrek 157
                       F   k l  e+++ e+++ +k   + + +++ ++ e+ + + ++ ++ +
       KKY24125.1  29 LFTPSKGLAHEHDTYETTSSVKTTSKSNLTMTIHNDEIVESTYETSRETT 78 
                      46667788888888888888877766666666666665544444443333 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.64
  Ax_dynein_light 132 eeekeelekqvaelkaklealekrekerrqe 162
                      e+e++ l+k ++e + ++ ++ ++  +++++
       KKY24125.1 382 EAEVSALKKAITEAEVRCGTALEDVRNEKAK 412
                      3344444444444444443333333333332 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00044
  Ax_dynein_light 110 gmrkalqaeqgkselekkikeLeeekeelekqvaelkaklealek 154
                        r a +ae++ +e++kk+ + e +++ele qv++l+++++a+ +
       KKY24125.1 444 RTRDAEKAERKVDEMDKKLGDWEGRNRELEAQVETLRRRVAAAAE 488
                      6788999*******************************9988766 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.48
  Ax_dynein_light  96 iaayktlyessvaFgmrkalqaeqgkselekkikeLeeekeelekqvaelkakl 149
                        ++++ly+   +++ + a  ++  +++ ek++keLe   +e +++v  lk++ 
       KKY24125.1 522 ARELHALYK--GKHETKVAALKKSYEARWEKRVKELEGCLKESQEEVIALKTER 573
                      444444444..2334455555555555566666666666666666666666554 PP

  == domain 5  score: 9.8 bits;  conditional E-value: 0.00099
  Ax_dynein_light 117 aeqgkselekkikeLeeekeelekqvaelkaklealekrekerrqeeekkheee 170
                       e++k++l++  ++Le++k+ le +++ l+++l+a+++++++ r+e ek+++e+
       KKY24125.1 589 VEKEKERLREAAEHLEADKRMLEARIQGLESELSATQSESEDVRAELEKQRAEN 642
                      6899999******************************************99886 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.4      0.89   6.1e+02      43      69 ..     457     483 ..     411     490 .. 0.64
   2 ?   -0.2   0.0       1.5   1.1e+03       3      24 ..     549     570 ..     547     576 .. 0.79
   3 ?    2.7   3.2      0.19   1.3e+02       2      43 ..     610     651 ..     608     669 .. 0.74
   4 ?    5.0   0.0     0.036        25      28      46 ..     678     696 ..     672     700 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.89
  TolA_bind_tri  43 elqyqleqleerQrdlYldlDerlrkl 69 
                    e+  +l + e r r+l  +++++ r++
     KKY24125.1 457 EMDKKLGDWEGRNRELEAQVETLRRRV 483
                    333333333344444444444444444 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.5
  TolA_bind_tri   3 edrvarLErilearsqlllelq 24 
                    e+rv++LE  l+ +++  + l 
     KKY24125.1 549 EKRVKELEGCLKESQEEVIALK 570
                    89******99999887766665 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.19
  TolA_bind_tri   2 ledrvarLErilearsqlllelqqqlealqqelreLRGqiEe 43 
                    le+r++ LE  l+a ++   ++  +le+ ++e  eL   +++
     KKY24125.1 610 LEARIQGLESELSATQSESEDVRAELEKQRAENGELVAAVDV 651
                    789999999999998888888999999999998888777776 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.036
  TolA_bind_tri  28 ealqqelreLRGqiEelqy 46 
                    ++lq+ ++ LRG+i + ++
     KKY24125.1 678 STLQSNIDNLRGSIHRSAH 696
                    78************99988 PP

>> CEP63  Centrosomal protein of 63 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   5.7    0.0041       2.8      43     153 ..     370     485 ..     358     491 .. 0.78
   2 ?    5.3   3.2     0.023        16      23      53 ..     545     575 ..     537     602 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0041
       CEP63  43 eLasarnaldekhkEvgllrqqleelek...ekqelvakyeqqlqklr..eelsklkrsyekLqrkqlkearekeakskeedrvelsrlnskleefrqk 136
                  ++++r++l  k+ Ev  l++ + e+e    +  e v++ + +++ l+  +e  + ++ +     + +k++   +++  e+++ +++++ +kl +++ +
  KKY24125.1 370 QISALRATLSGKEAEVSALKKAITEAEVrcgTALEDVRNEKAKVEGLEsdREAWRARQAEMEGILRDVKQEVLVRTRDAEKAERKVDEMDKKLGDWEGR 468
                 68899****************99998852224567777888888888622445555555555567888888877899999999999999********** PP

       CEP63 137 slewekqrlqyqkqvas 153
                  +e e q    ++ va+
  KKY24125.1 469 NRELEAQVETLRRRVAA 485
                 ***99999988888875 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.023
       CEP63  23 kseWeaqtraletrlkireeeLasarnalde 53 
                 ++ We++++ le +lk  +ee+ ++++  d+
  KKY24125.1 545 EARWEKRVKELEGCLKESQEEVIALKTERDA 575
                 468*********************9987665 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.3     0.065        45     663     704 ..     445     486 ..     356     492 .. 0.61
   2 ?    4.3   0.5     0.011       7.9     321     412 ..     549     639 ..     503     656 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.065
    Prominin 663 qelvlplessvkklkksvkkldeensdlqesikkllaavera 704
                 +  +++ e++v+++ k++ + + +n++l+++++ l ++v +a
  KKY24125.1 445 TRDAEKAERKVDEMDKKLGDWEGRNRELEAQVETLRRRVAAA 486
                 222334566666666666666669999999999999998877 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.011
    Prominin 321 devlealeevletnlssivkeglarlneipekvknqtaevvpdlkkalakgreqikklakkiprealdavisdlenterssktfddvvekye 412
                 ++ +++le+ l+++ ++++  + +r  +i+  v ++++  v++ k+ l+++ e+++  ++++ + +++ + s+l+ t+++s+    ++ek  
  KKY24125.1 549 EKRVKELEGCLKESQEEVIALKTERDATISAPVMTHLSPEVEKEKERLREAAEHLEADKRML-EARIQGLESELSATQSESEDVRAELEKQR 639
                 67789999999999999999999999999999999999999999999999999999999999.99999999999999999999888888754 PP

>> Nnf1  Nnf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2      0.43     3e+02      69     107 ..     358     394 ..     304     397 .. 0.77
   2 ?    6.9   3.3     0.012         8      43     110 .]     409     481 ..     401     481 .. 0.83
   3 ?    5.9   7.1     0.024        17      34     108 ..     551     617 ..     500     619 .. 0.82
   4 ?    2.0   0.5       0.4   2.7e+02      78     105 ..     622     649 ..     617     652 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.43
                 THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Nnf1  69 eeliaahlapakkeeqeeLearlqeleaenaelaeevee 107
                 +el   +l++ +  + ++L+a l+  eae  +l++ ++e
  KKY24125.1 358 REL--ESLRSDLTSQISALRATLSGKEAEVSALKKAITE 394
                 554..4688999999999999999999999999999987 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.012
                 HHHHCCHH-T...............TTSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Nnf1  43 eeAkerreegeeeasrpe.....vpphtLpPeeliaahlapakkeeqeeLearlqeleaenaelaeeveeqre 110
                 e+Ak +  e+++ea+r+      + + + + e l++ + a++ ++  +e++++l + e  n+el+ +ve++r+
  KKY24125.1 409 EKAKVEGLESDREAWRARqaemeGILRDVKQEVLVRTRDAEKAERKVDEMDKKLGDWEGRNRELEAQVETLRR 481
                 4566667777778887778888866778889**************************************9985 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.024
                 HHHHHHHHHHHHHCCHH-T..........TTSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Nnf1  34 kLneLDdlieeAkerreegeeeasrpevpphtLpPeeliaahlapakkeeqeeLearlqeleaenaelaeeveeq 108
                 +  eL+ +++e++e+  + ++e +         + +  +  hl+p+ ++e+e+L++  + lea+ + l+ +++ +
  KKY24125.1 551 RVKELEGCLKESQEEVIALKTERDA--------TISAPVMTHLSPEVEKEKERLREAAEHLEADKRMLEARIQGL 617
                 5567777777777666655444332........36677889******************************9976 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.4
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Nnf1  78 pakkeeqeeLearlqeleaenaelaeev 105
                 +a + e e+ +a+l++ +aen el   v
  KKY24125.1 622 SATQSESEDVRAELEKQRAENGELVAAV 649
                 4567888889999999999998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1685  (0.0939818); expected 358.6 (0.02)
Passed bias filter:                      692  (0.0385967); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                        80  (0.00446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 1.38u 0.40s 00:00:01.77 Elapsed: 00:00:00.57
# Mc/sec: 4145.23
//
Query:       KKY24126.1  [L=383]
Description: putative 5-azacytidine resistance protein azr1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-10   41.8   0.0    4.3e-10   39.8   0.0    1.8  2  SpoIIE         Stage II sporulation protein E (SpoIIE)
    2.2e-09   37.3   0.2    3.7e-09   36.5   0.2    1.4  1  PP2C_2         Protein phosphatase 2C
    2.6e-09   37.1   0.7    7.9e-05   22.4   0.1    2.5  2  PP2C           Protein phosphatase 2C
  ------ inclusion threshold ------
       0.18   12.0   0.0       0.44   10.7   0.0    1.6  1  Nse4-Nse3_bdg  Binding domain of Nse4/EID3 to Nse3-MAGE


Domain annotation for each model (and alignments):
>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   9.5e-14   4.3e-10       2     143 ..     101     271 ..     100     293 .. 0.87
   2 ?   -0.8   0.0      0.28   1.2e+03     168     190 ..     346     369 ..     322     370 .. 0.66

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 9.5e-14
                 TTEEEEEEEECSS....SSHHHHHHHHHHHHHHHHHHHTTTS...HHHHHHHHHHHCHCTTSTT.TTCEEEEEEEETTTTEEEEEEESSSSEEEEETTS CS
      SpoIIE   2 dgrlalvvgDvvG....hGleAalimgllrsalrelatagle...paevlkrlnralardleeeerfaTavlavydpstgkleyanaGhpppllvrpdg 93 
                 d++la++++D+vG     G++ a ++  l+s +   a +      p ++l++ ++ +++d    + + Ta++a+    +g +++an+G++  l +r+ g
  KKY24126.1 101 DEQLAFGIADGVGgwtsSGVDPADFAHGLCSYMAVSALRAEHvdtPRNLLQKGYNDVHQDRSIPAGGSTACIAI-ASTKGFVQIANLGDSGFLHLRR-G 197
                 7899**************************99887774444446899999999988877777778999999999.777888****************.4 PP

                 ....TEEEEE--SS--..TTTSSS..................T-EEEEEEE--TTEEEEEESCCCCSSSHHHHH CS
      SpoIIE  94 ....gtklllastglp..lGilpe..................adyetaelelepgdtlllyTDGvtEardsdge 143
                         +l+s++ p  l+++p+                  +++++ + +l+ gd+l+l++DGv ++ + ++ 
  KKY24126.1 198 avhdLSSPQLHSFNTPyqLSVIPQhlivqsaifggaplsdqpSHADQFKQQLQHGDVLVLASDGVWDNLNAQDV 271
                 3666677788899999***************************************************9977665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.28
                 HHHHHHHH.HTTSSSSS-EEEEEE CS
      SpoIIE 168 alveelle.lgsgeleDDitllvl 190
                 ++++ + + +  g++ DDi++lvl
  KKY24126.1 346 EVQRYFPNeNWHGGKVDDISVLVL 369
                 4444444463345999******96 PP

>> PP2C_2  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.2   8.2e-13   3.7e-09       7     187 ..      83     273 ..      77     300 .. 0.73

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 8.2e-13
      PP2C_2   7 rrglpcqDala..vwtdsggsll.aVaDGaGSakrSerGariaveavvealaelleseeeeeeallraleaailadvlkeeaeaqdaelkdyatTllaa 102
                  r    qDa++   + +++ +l+  +aDG+G    S++  +  ++ +++++a ++ ++e    +  r+l+++ + dv      +qd ++ + ++T  +a
  KKY24126.1  83 GRPDSGQDAFFiaKVGEEDEQLAfGIADGVGGWTSSGVDPADFAHGLCSYMAVSALRAEHV--DTPRNLLQKGYNDV------HQDRSIPAGGSTACIA 173
                 455667*****97445555566657*******99999986667777788888666544444..66666666666433......3566666666555555 PP

      PP2C_2 103 v.vtpdeivalqiGDGaivvrdrdgevqllgepdsgeyan..qttfltsedaeeel...............rirrlkledgdalllmTDGlanslrdee 183
                 +  t++++ ++++GD++  +  r g+v++l++p+ + +    q   ++++ ++++                +++   l+ gd l+l++DG+ ++l  ++
  KKY24126.1 174 IaSTKGFVQIANLGDSGF-LHLRRGAVHDLSSPQLHSFNTpyQLSVIPQHLIVQSAifggaplsdqpshadQFKQQ-LQHGDVLVLASDGVWDNLNAQD 270
                 538899999*********.689***********888876522699999999999999***********77666444.578************9996444 PP

      PP2C_2 184 rfae 187
                  + +
  KKY24126.1 271 -VLD 273
                 .333 PP

>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   1.5e-05     0.065      92     137 ..     159     203 ..      73     209 .. 0.74
   2 !   22.4   0.1   1.8e-08   7.9e-05     205     236 ..     252     283 ..     236     301 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.5e-05
                 HHHCHCCT-EEEEEEEEEETTE.EEEEEESS-EEEEEETTEEEEECS CS
        PP2C  92 kantepsksGstavvalirgtk.lyvAnvGDSravLcrkgnakkelt 137
                 +++ +    Gsta +a+ + +   ++An+GDS  +  r+g  +  l+
  KKY24126.1 159 QDR-SIPAGGSTACIAIASTKGfVQIANLGDSGFLHLRRGAVH-DLS 203
                 233.46789*******9999999*********98877766665.665 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 1.8e-08
                 EEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHT CS
        PP2C 205 defliLacdGlwdvlsdqeavdlvrdelekkk 236
                  + l+La+dG+wd l+ q++ d+v +e++k +
  KKY24126.1 252 GDVLVLASDGVWDNLNAQDVLDIVCREMQKYG 283
                 4689************************9866 PP

>> Nse4-Nse3_bdg  Binding domain of Nse4/EID3 to Nse3-MAGE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.8e-05      0.44      23      45 ..     117     139 ..     109     157 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.8e-05
  Nse4-Nse3_bdg  23 gggfDvdeFvsklktfMggdrfe 45 
                    ++g+D+ +F+  l ++M  +++ 
     KKY24126.1 117 SSGVDPADFAHGLCSYMAVSALR 139
                    79***************997766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.32s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2518.44
//
Query:       KKY24127.1  [L=273]
Description: putative transcription elongation factor s-ii [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-29  100.3   0.2    1.8e-28   99.3   0.1    1.6  2  TFIIS_M         Transcription factor S-II (TFIIS), central do
    3.2e-18   65.3   5.8    4.9e-18   64.7   5.8    1.3  1  TFIIS_C         Transcription factor S-II (TFIIS)
    1.3e-12   47.5   1.0    2.8e-12   46.4   1.0    1.6  1  Med26           TFIIS helical bundle-like domain


Domain annotation for each model (and alignments):
>> TFIIS_M  Transcription factor S-II (TFIIS), central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.2   7.4e+03       4      35 ..      16      42 ..      14      51 .. 0.61
   2 !   99.3   0.1     3e-32   1.8e-28       2     111 ..     110     219 ..     109     220 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.2
                HHHHHHHHHHHTT---...-.--THHHHHHHH CS
     TFIIS_M  4 RdkcrelLaealeedsseaeeeedveelaaei 35
                R+ ++ ++ ++l++++s      +v++la  i
  KKY24127.1 16 RQTAVGKMVNKLKAHKS-----PEVAKLASTI 42
                56666666666666662.....4555555544 PP

  == domain 2  score: 99.3 bits;  conditional E-value: 3e-32
                 HHHHHHHHHHHHHTT---...-.--THHHHHHHHHHHHHH..HT------HHHHHHHHHHHHHS-TT-HHHHHTSSSS--STTTTS---TTTSS-HHHH CS
     TFIIS_M   2 kvRdkcrelLaealeedsseaeeeedveelaaeiEealfe..kekkstdkkykqkvrslvfNLkdkkNpeLrrrvlsgeispeklvkmspeElaseelk 98 
                   R++c++lL+++l++ ss  + +++v ++a++iEea+       +s+   y++kvrsl++NLk+k+Np+Lr+r+l ge++pe++v+m+++El+se++k
  KKY24127.1 110 DSRNNCIRLLYDGLAHTSSV-S-ATKVLSIAVAIEEAALRicGDGQSSAAPYREKVRSLFMNLKNKSNPGLRHRILGGEVTPERFVSMTHDELKSEQQK 206
                 67***************963.3.79************99976334455577************************************************ PP

                 HHHHHHHHHHHHT CS
     TFIIS_M  99 eereklekealee 111
                 +e+ k++ke+l++
  KKY24127.1 207 AEEIKIAKENLDK 219
                 **********986 PP

>> TFIIS_C  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   5.8   8.1e-22   4.9e-18       2      39 .]     234     271 ..     233     271 .. 0.98

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 8.1e-22
     TFIIS_C   2 kCpkCgsreayffqlQtRsaDEpmtvfykCtkCghrWr 39 
                 +C kC+++++++ q+QtRsaDEpmt+f++C++Cg+rW+
  KKY24127.1 234 QCGKCKEKRVSYSQAQTRSADEPMTTFCECLSCGNRWK 271
                 8************************************7 PP

>> Med26  TFIIS helical bundle-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   1.0   4.8e-16   2.8e-12       4      53 .]       2      50 ..       1      50 [. 0.89

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 4.8e-16
                HHS---.....H.HHHHHSHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHH CS
       Med26  4 aqLeklpi.tte.tLkstgIGkvVnalrkhkhetaevktlAksLvekWkkav 53
                ++Lek  + +te +L++t +Gk Vn+l+   h+++ev++lA+ +v+kW++ +
  KKY24127.1  2 KELEKG-VkPTEeLLRQTAVGKMVNKLKA--HKSPEVAKLASTIVNKWRRDI 50
                799*99.55999899************65..55****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1197  (0.0667633); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 1741.14
//
Query:       KKY24128.1  [L=308]
Description: putative quinate utilization oxidoreductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-26   92.3   0.0    6.1e-26   91.6   0.0    1.4  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
    1.2e-14   54.3   0.0    2.4e-14   53.3   0.0    1.5  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 
  ------ inclusion threshold ------
      0.015   16.0   0.0       0.03   15.0   0.0    1.5  1  CoA_binding     CoA binding domain
      0.032   13.9   0.0      0.059   13.1   0.0    1.3  1  TPP_enzyme_M_2  Middle domain of thiamine pyrophosphate
      0.084   13.3   0.1       0.24   11.8   0.0    1.8  2  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6   0.0   1.7e-29   6.1e-26       3     120 .]       7     124 ..       5     124 .. 0.93

  Alignments for each domain:
  == domain 1  score: 91.6 bits;  conditional E-value: 1.7e-29
                   EEEETT.SHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCT.TESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-S CS
  GFO_IDH_MocA   3 vaiiGa.Gkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladp.eidavivatpngtheelakaaleagkhvllEKPlat 97 
                   ++++G+ G ig++hl+ + +s   + + +++dp++++ + +++s+ v+ ++++eell+++ ++da+iv+tpn+th  l ++++ ag+hvl+EKP++ 
    KKY24128.1   7 IVVVGGsGLIGKRHLQHVAKS-LSAIIFGIIDPSPAAID-LSASYSVPLFASVEELLKQSkRPDAAIVCTPNRTHVPLSLDLVSAGIHVLVEKPISI 101
                   6677666999*****888888.8889*********7776.78****************9989*********************************** PP

                   SHHHHHHHHHHHHHHTS-EEEE- CS
  GFO_IDH_MocA  98 tveeakelvelaekkgklvsvgy 120
                   +v+  + l+++a+k++++v vg+
    KKY24128.1 102 SVSSGQSLIDTAKKQNVRVLVGH 124
                   *********************97 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   6.6e-18   2.4e-14       1     102 [.     136     263 ..     136     271 .. 0.85

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 6.6e-18
                     HHHHHTTTTSSEEEEEE.EEECBEEECHHHHCCGGSH..HCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.SEEESCTCCSCSEEE....... CS
  GFO_IDH_MocA_C   1 KelIengklGevvsvdv.wtldtragaeakkrwkrrk..kksgGvlgdlgiHdiDllqwLfGqppsvvaalgrmrqnaeaaededaav....... 85 
                     Ke+++++++G++++v+  wt+ ++++++++   ++r   + +gGv+ ++ iH+iDl+++LfG++ +v a    +r     ae  da++       
      KKY24128.1 136 KEALDSNVIGDITAVSAlWTVFKPQSYFDPEALRWRSskQDGGGVVLINMIHEIDLMHYLFGTVTRVHAEKSVTRRRTTPAEQADAEEegaaitl 230
                     99*************************987655555555******************************88877777777777777778888888 PP

                     ................EEEEEEEETTEEEEEEE CS
  GFO_IDH_MocA_C  86 ................msvlnlekgsgevitle 102
                                       ++n+e+g+ge+++++
      KKY24128.1 231 rfksgvvgtfiisdhvGFPHNFEFGTGENPMIH 263
                     888888888888888766788888888888776 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   8.4e-06      0.03       5      91 ..       6      95 ..       3      96 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.4e-06
                 EEEEETTTSHHHHHH.HHHHHHHHECEEEEEEC-TTTTT.CEETTEEEESCHHHHHHHCT.TTEEEEES-HHHHHHHHHHHHHTT-SEEE CS
  CoA_binding  5 kviviGagglgiagl.yhfkeklkygikavfgvnprkvg.tevlglpvyksvdeleekte.vdvavitvPaesaqeavdelveagikgiv 91
                 +++v+G +gl ++    h+++ l+  i  +++ +p  +  +    +p + sv+el ++ + +d+a++++P++      ++lv agi + v
   KKY24128.1  6 EIVVVGGSGLIGKRHlQHVAKSLSAIIFGIIDPSPAAIDlSASYSVPLFASVEELLKQSKrPDAAIVCTPNRTHVPLSLDLVSAGIHVLV 95
                 68999999996666668888888888888888888877634444**************966**********9999899999999998765 PP

>> TPP_enzyme_M_2  Middle domain of thiamine pyrophosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.7e-05     0.059      99     156 ..       6      64 ..       3      73 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.7e-05
                     SEEEEESB---SHHHHHHHHH-.--SEEEEEESS-SB--TT--SEEEEES-HHHHHHHS CS
  TPP_enzyme_M_2  99 diviqfGsrlvsKrllqflael.kpeeyWlvdesqgrldpahhrkrrfvakveewlrah 156
                     +iv++ Gs l++Kr lq++a++ +   + ++d+s+  +d +++ +  + a+vee l++ 
      KKY24128.1   6 EIVVVGGSGLIGKRHLQHVAKSlSAIIFGIIDPSPAAIDLSASYSVPLFASVEELLKQS 64 
                     89****************98862556799***********************9999875 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.8e-05      0.24       2      93 ..       7      93 ..       6     102 .. 0.84
   2 ?   -3.0   0.0       2.7   9.7e+03      12      49 ..     179     216 ..     178     225 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.8e-05
                    EEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSG..GGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTSEE CS
  Semialdhyde_dh  2 vaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavk..aleegkdlkvedvdeeelkevdivflalpagvskelapklaeagvkv 93
                    + +vG++G +G++ l+ ++++ ++ +  ++  s  a   l++ ++    +++     e+   ++ k+ d ++ ++p+ ++ +l  +l++ag++v
      KKY24128.1  7 IVVVGGSGLIGKRHLQHVAKSLSAIIFGIIDPSP-AAIDLSASYSvpLFASV-----EE-LLKQSKRPDAAIVCTPNRTHVPLSLDLVSAGIHV 93
                    789***********************99999999.88888888772233333.....33.44456999***********************987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.7
                     HHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGT CS
  Semialdhyde_dh  12 GqellrlLeehpevelvvllsssrsaGkklaeavkale 49 
                     G +l+++++e   +  ++ + ++ +a k ++++  +++
      KKY24128.1 179 GVVLINMIHEIDLMHYLFGTVTRVHAEKSVTRRRTTPA 216
                     77788888875444444444444456666666655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 1944.92
//
Query:       KKY24129.1  [L=375]
Description: putative alpha-ketoglutarate-dependent taurine dioxygenase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-56  189.6   1.3      1e-54  186.1   1.3    2.0  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family
  ------ inclusion threshold ------
      0.088   13.2   0.0       0.18   12.2   0.0    1.4  1  ATG_C     Autophagy-related protein C terminal domain


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.1   1.3   1.2e-58     1e-54       4     268 .]      78     364 ..      75     364 .. 0.92

  Alignments for each domain:
  == domain 1  score: 186.1 bits;  conditional E-value: 1.2e-58
        TauD   4 pltpkfgae..gvdlsdleslddelkeelrellaeygvvvfrgfpl...speqqlefarrfGplygtpgrgtntkygevldvssvyesadianlayttl 97 
                 +lt ++gae  gv+l++   l+d+ k++l  l+a+ +vv fr+++      +++l+f  +fG  +++p +g+++ y+ev++v   +e+ ++a+l ++  
  KKY24129.1  78 DLTANIGAEvtGVQLHE---LSDAGKDQLALLVAQKKVVAFRDQEWanlPIKELLDFGGYFGRHHIHPTSGAPKGYPEVHIVHRAAEDTSAADLFTNRT 173
                 79999****99999999...88888*******************55555********************************888777777777555555 PP

        TauD  98 l.....................wHtDlsylesppgiqlLhcleapatGGetpfvDgraaynaLpeelpellegltavrvyyhyrggglrteqelpavdk 175
                                          D +y+++ppg+++L++l +p++GG+t+fv+ +aay++L+++ +e+l+gl+av++  ++ +  + + +    +++
  KKY24129.1 174 TsvawhsgtphasykqianhspNSPDVTYEQQPPGTTFLYALDIPESGGDTLFVNQAAAYRRLSPAFRERLQGLKAVHTGVDQAN--GAKSRGGIVRRE 270
                 56788888888888888766654569***********************************************************..999999999999 PP

        TauD 176 hprtghpvvrthpvltgrkallvnppfatrieglgtpeskelldaleelledp.eftyrfqwqeGdlvifdNrrvlHgrt.afdegeeRhllrcy 268
                   +++hpvvrthp  tg+kal+vnp+f+++i+g +++es+ ll++l+++++   +++ r++w +  +v++dNr ++H++  ++++g++Rh+ r++
  KKY24129.1 271 PVTSIHPVVRTHPA-TGEKALFVNPQFTRYIVGFKKEESDYLLKFLYDHIAYSaDLQARVKWAPKTVVLWDNRVTAHSALlDWEDGQRRHIARIT 364
                 *************6.***********************************9966*****************************999999**9986 PP

>> ATG_C  Autophagy-related protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     2e-05      0.18      17      72 ..     231     285 ..     228     291 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2e-05
       ATG_C  17 qAysslskglksaaqtilavpsevaeskgakgavkavvravPvavlrPligateav 72 
                  Ay+ ls  +++  q + av + v++ +gak+   ++vr+ Pv+ ++P++ +  a+
  KKY24129.1 231 AAYRRLSPAFRERLQGLKAVHTGVDQANGAKSRG-GIVRREPVTSIHPVVRTHPAT 285
                 69**********************9999988776.599999********9887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2547.02
//
Query:       KKY24130.1  [L=1095]
Description: putative rad4 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-33  115.8   4.4    3.9e-33  114.2   0.3    2.7  2  Rad4            Rad4 transglutaminase-like domain
    7.6e-30  103.1   0.5    1.4e-29  102.3   0.5    1.5  1  BHD_3           Rad4 beta-hairpin domain 3
    4.5e-15   56.4   0.2    4.5e-15   56.4   0.2    4.3  4  BHD_2           Rad4 beta-hairpin domain 2
    1.2e-13   50.7   0.0    2.6e-13   49.6   0.0    1.6  1  BHD_1           Rad4 beta-hairpin domain 1
     0.0027   18.1   0.0      0.015   15.7   0.0    2.3  2  Transglut_core  Transglutaminase-like superfamily


Domain annotation for each model (and alignments):
>> Rad4  Rad4 transglutaminase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.4     0.035   1.3e+02      80      95 ..     432     447 ..     403     450 .. 0.79
   2 !  114.2   0.3   1.1e-36   3.9e-33      23     146 ..     452     597 ..     447     598 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.035
                 EEEEE-TTS-EEE-HH CS
        Rad4  80 YVvAfdsdgsakDVTr 95 
                  +vA+d+d s+ DVT 
  KKY24130.1 432 SIVAVDDDSSVVDVTH 447
                 58*************7 PP

  == domain 2  score: 114.2 bits;  conditional E-value: 1.1e-36
                 .--TTHHHHHTTS-SEEEEEEETTTTEEEEEESSSS-EE.....SS--TTS--...TGGGS----EEEEE-TTS-EEE-HHHH-T..TCCCCHGGGSGG CS
        Rad4  23 kkkkrlkdkdlpypvyWvEvfspekkkwisvdplvgsti.....ekkeilepl...aekakqvlsYVvAfdsdgsakDVTrRYls.dysnsktkklrve 112
                 ++k r++d+dl +p+yW+E++sp++ k i+v p+ g +          ++ep+   aekakqv++YV+Af+ dgsakDVT+RYl+ +++++ktk+ r++
  KKY24130.1 452 RSKYRRYDRDLHFPIYWTEAISPISNKAIPVSPFIGANSvattdDHFVAFEPRgskAEKAKQVIAYVIAFSPDGSAKDVTTRYLKrHMWPGKTKGIRLP 550
                 567899*****************************998899887778899**9********************************************** PP

                 .............GSHHHHHHHHHHHHHH--S---H..HHHHHHHHH CS
        Rad4 113 .............kskeekkWfesvlrplekrnkertevdalEdael 146
                              k++ee++Wf+++++ + +r ++rt+vd+lEd ++
  KKY24130.1 551 vekvavynrrgkvKRYEEYDWFKTIMSSYMRRDDKRTAVDELEDSTD 597
                 ********************************************986 PP

>> BHD_3  Rad4 beta-hairpin domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.5     4e-33   1.4e-29       1      75 [.     738     810 ..     738     811 .. 0.94

  Alignments for each domain:
  == domain 1  score: 102.3 bits;  conditional E-value: 4e-33
                 ----TTS-EE-SSGGGS-TTEEEEE-TTHHHHHHHCT---EEEEEEEEE-SS-EE..EEEEEEEEEGGGHHHHHH CS
       BHD_3   1 vPkNeygnieifkpsmlPegavhislkgaakaakklgidyapAvvGFefkgrrgkgiPvidGivVaeedeeavle 75 
                 +PkN+ygni++f+psm+P+gavhi+l+g+ +++kkl+idya+Av+GFef++  + ++Pvi+G+v+a+e+e+av +
  KKY24130.1 738 IPKNAYGNIDCFVPSMIPKGAVHIPLRGTVRICKKLEIDYAEAVTGFEFGN--KMAVPVITGVVIAKENEDAVID 810
                 8************************************************93..3447***************986 PP

>> BHD_2  Rad4 beta-hairpin domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.3   4.8e+03      19      40 ..      25      81 ..      19      92 .. 0.60
   2 ?   -0.8   1.9      0.85     3e+03       6      43 ..     192     230 ..     190     247 .. 0.64
   3 !   56.4   0.2   1.2e-18   4.5e-15       2      64 .]     670     731 ..     669     731 .. 0.97
   4 ?   -3.9   0.3         5   1.8e+04      26      39 ..    1060    1073 ..    1056    1084 .. 0.40

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.3
       BHD_2 19 PvKrvksraktarkkredekk...................................e 40
                P K+ ++ a +++++  ++++                                   +
  KKY24130.1 25 PKKFKHADAERQERSTLQQNReftlgsdnsdsslsdiesdefedvptggiatngaqH 81
                556666666666666666666777777777777766666666666666666665432 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.85
       BHD_2   6 Wyr.lGReVkpgelPvKrvksraktarkkredekkeeee 43 
                 W    G +  p+ +P+K +  ++ + + + +  k+ee +
  KKY24130.1 192 WRVrSGLVESPKTQPAKATSTKKGKSKTRGKYGKDEERN 230
                 655577777888999999988666555554333332222 PP

  == domain 3  score: 56.4 bits;  conditional E-value: 1.2e-18
       BHD_2   2 SaerWyrlGReVkpgelPvKrvksraktarkkredekkeeeeeeeegevpLYgewQTelYvpP 64 
                 Sae+W+++GR  k ge+P+K+v+ ra+t  +kre e++ e  ++e+++++LY+ +QTe ++pP
  KKY24130.1 670 SAESWHKEGRRPKIGEIPLKFVPIRAVTLTRKREAEEQ-ERITGEKPTQGLYSLEQTEYIIPP 731
                 9*******************************999998.9999*******************9 PP

  == domain 4  score: -3.9 bits;  conditional E-value: 5
       BHD_2   26 raktarkkredekk 39  
                  r+++ r +  ++++
  KKY24130.1 1060 RRRRGRPRKFEADH 1073
                  33333333333322 PP

>> BHD_1  Rad4 beta-hairpin domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   7.3e-17   2.6e-13       5      51 .]     612     665 ..     608     665 .. 0.90

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 7.3e-17
       BHD_1   5 PenlqdfKnhplYvLerhLkrnEvlhpdakpvgvfkk.......kepVYrRsdV 51 
                  ++lq ++ +  +vLer+L+r+E+l+ +akpv++f++       +e++Y+R+dV
  KKY24130.1 612 GDTLQSLRASADFVLERFLRREEALKTTAKPVRKFQTgkgdkakEEDIYLRKDV 665
                 589********************************657777778*********9 PP

>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.2e-06     0.015      29      80 ..     297     351 ..     277     385 .. 0.72
   2 ?   -3.4   0.0       3.6   1.3e+04       8      53 ..     608     652 ..     605     654 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.2e-06
  Transglut_core  29 veysaprrtpgsrdaeavle.tgk..GncedfaslfvallRalGipaRvvtgyls 80 
                      +y++ +++ + ++++++   +++  G     a+lf+allR +Gi+aR++ ++++
      KKY24130.1 297 GQYDPFKHGEKIDNLSHFKSlAKRceGSRDVGAQLFTALLRGIGIEARMIANLQP 351
                     55663333333344555544434356888899******************99877 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.6
  Transglut_core   8 tagakdplekakaiyewvrknveysaprrtpgsrdaeavletgkGn 53 
                     t+++ d l+ ++a +++v +++  + +++ +++++++  ++tgkG+
      KKY24130.1 608 TEQQGDTLQSLRASADFVLERFLRR-EEALKTTAKPVRKFQTGKGD 652
                     5677888899999999999998888.55555555555555778876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1095 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.53
# Mc/sec: 6193.37
//
Query:       KKY24131.1  [L=495]
Description: putative tol protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.011   16.1   0.0      0.019   15.3   0.0    1.4  1  HET              Heterokaryon incompatibility protein (HET)
       0.53   10.3   2.9        1.2    9.1   2.9    1.5  1  Chlorosome_CsmC  Chlorosome envelope protein C


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   2.2e-06     0.019      67     146 .]       1      83 [.       1      83 [. 0.78

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.2e-06
         HET  67 madIYsnAelvivalgsesedsgllalealralkkekleekeielkksaek....kkellekeeraieellespwfkRvWvlQE 146
                 m++IYs A++v++a+   +++s l++++  ++ ++ +  + ++ l+  ++       +  +++ r+   l ++ w +R+W+lQE
  KKY24131.1   1 MDSIYSLATVVLIAATCIDANSHLPGISPGTRRHEPEPFR-MKGLDLVQSLdpvlGVKIDHRTDRSGGYLGDTIWDTRAWTLQE 83 
                 99******************99999999987777666666.333333322345667777788888888899************9 PP

>> Chlorosome_CsmC  Chlorosome envelope protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.9   0.00013       1.2      41     108 ..     422     488 ..     415     492 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00013
  Chlorosome_CsmC  41 elaGsvvetvagtvgslidatGiskllgstsgvvgetidrvaitvkdvsraaGelysdavknvenvtd 108
                       + G  v  v+ tvg ++ a+G + l ++ +gv g++ + v   +kdv+         ++k+v+n+ +
       KKY24131.1 422 IVLGNAVSGVTNTVGGVVGAAGRG-LGETVTGVTGKAGKPVGDGIKDVAEGIEGGAARVAKGVKNAGE 488
                      57899999*************999.5555689999999999999999999888888888899988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 3166.33
//
Query:       KKY24132.1  [L=152]
Description: putative myosin regulatory light chain cdc4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-10   41.0   0.1     0.0002   21.8   0.0    2.2  2  EF-hand_7   EF-hand domain pair
    9.5e-10   37.6   0.2    0.00017   21.3   0.0    2.7  2  EF-hand_6   EF-hand domain
    1.6e-09   37.9   0.0    0.00025   21.3   0.0    2.8  3  EF-hand_9   EF-hand domain
    2.2e-09   36.2   0.2    0.00019   20.7   0.0    2.6  3  EF-hand_1   EF hand
      9e-06   25.5   0.1      0.036   13.9   0.0    2.6  3  EF-hand_8   EF-hand domain pair
  ------ inclusion threshold ------
       0.19   12.1   0.0         29    5.1   0.0    2.1  2  EF-hand_14  EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.3e-06    0.0039       3      47 ..      14      52 ..      12      72 .. 0.79
   2 !   21.8   0.0   6.6e-08    0.0002       6      52 ..      87     128 ..      82     147 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.3e-06
   EF-hand_7  3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeele 47
                 +keaF ++D++g+g+++ e l +llr+       +++ +  e++
  KKY24132.1 14 NIKEAFSLFDKRGNGRVSLESLGDLLRACG-----QNP-TLAEIR 52
                69*************************844.....443.333444 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 6.6e-08
   EF-hand_7   6 ea.FkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfke 52 
                 ++ F+ +D+d +gy+ + +l+ +l+        g+k+sdee+++l+k 
  KKY24132.1  87 TRgFQVFDKDLTGYIGVGQLRYILT------NLGEKMSDEEVDELLKS 128
                 566******************9999......89***********9985 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   5.6e-08   0.00017       2      29 ..      15      41 ..      14      44 .. 0.92
   2 !   13.5   0.0   1.8e-05     0.053       6      31 .]      90     114 ..      86     114 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 5.6e-08
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalrka 29
                ++eaF lfDk g+G ++ e l ++lr a
  KKY24132.1 15 IKEAFSLFDKRGNGRVSLESLGDLLR-A 41
                79***********************9.5 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.8e-05
   EF-hand_6   6 FklfDkdgdGkidaeElrkalrkalg 31 
                 F+ fDkd +G+i   +lr +l+ +lg
  KKY24132.1  90 FQVFDKDLTGYIGVGQLRYILT-NLG 114
                 99*******************9.776 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   8.2e-08   0.00025       3      43 ..      18      57 ..      16      73 .. 0.85
   2 !   13.6   0.0   2.1e-05     0.063       4      42 ..      90     127 ..      87     136 .. 0.86
   3 ?   -1.3   0.0      0.95   2.8e+03      10      21 ..     135     146 ..     131     149 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 8.2e-08
   EF-hand_9  3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelake 43
                 F+++D    GrV +  l d+Lra+++ +p+ +e+ +l k+
  KKY24132.1 18 AFSLFDKRGNGRVSLESLGDLLRACGQ-NPTLAEIRDLEKS 57
                6**************************.8887777777665 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 2.1e-05
   EF-hand_9   4 FevcDtqktGrVpvsrlidyLravtaqdpeeseLeelak 42 
                 F+v+D + tG + v +l  +L   ++ + ++ e++el k
  KKY24132.1  90 FQVFDKDLTGYIGVGQLRYILTNLGE-KMSDEEVDELLK 127
                 **************************.556667888766 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.95
   EF-hand_9  10 qktGrVpvsrli 21 
                 qktG+V+  +l+
  KKY24132.1 135 QKTGEVRYLDLV 146
                 899999876665 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   6.4e-08   0.00019       2      28 ..      15      41 ..      14      42 .. 0.93
   2 !   13.1   0.0   1.8e-05     0.054       5      28 ..      89     112 ..      85     113 .. 0.89
   3 ?   -3.3   0.0         3   8.9e+03      19      27 ..     119     127 ..     116     128 .. 0.57

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 6.4e-08
                HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellkk 28
                +ke+F++fDk g+G++++e + +ll++
  KKY24132.1 15 IKEAFSLFDKRGNGRVSLESLGDLLRA 41
                89******************9999986 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.8e-05
                 HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellkk 28 
                  F++fDkD +G+I   +++ +l+ 
  KKY24132.1  89 GFQVFDKDLTGYIGVGQLRYILTN 112
                 59*****************99986 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 3
                 HHHHHHHHH CS
   EF-hand_1  19 feEfkellk 27 
                  eE  ellk
  KKY24132.1 119 DEEVDELLK 127
                 566666665 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00047       1.4      28      48 ..      15      35 ..      11      42 .. 0.83
   2 ?    2.4   0.0     0.047   1.4e+02      22      44 ..      80     102 ..      59     103 .. 0.66
   3 !   13.9   0.0   1.2e-05     0.036       2      33 ..      98     127 ..      97     129 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00047
   EF-hand_8 28 vdilfrefDtdgdGkisfeEF 48
                + + f++fD  g+G++s+e+ 
  KKY24132.1 15 IKEAFSLFDKRGNGRVSLESL 35
                55679*************976 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.047
   EF-hand_8  22 glseeevdilfrefDtdgdGkis 44 
                    +ee +  f  fD d  G+i+
  KKY24132.1  80 PGDPEEYTRGFQVFDKDLTGYIG 102
                 5555666666999********97 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 1.2e-05
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfr 33 
                 +g+I +  lr il+ lg k  +s+eevd+l++
  KKY24132.1  98 TGYIGVGQLRYILTNLGEK--MSDEEVDELLK 127
                 799**********999*99..*********96 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0098        29       6      30 ..      19      43 ..      16      57 .. 0.91
   2 ?    5.0   0.0      0.01        31       6      52 ..      90     136 ..      88     150 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0098
  EF-hand_14  6 fdlfkdeetdklsvakllkaLaetG 30
                f lf++++++++s++ l + L+++G
  KKY24132.1 19 FSLFDKRGNGRVSLESLGDLLRACG 43
                899*********************9 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.01
  EF-hand_14   6 fdlfkdeetdklsvakllkaLaetGirkdDpRLkellkklkkvekek 52 
                 f++f+++ t+ + v +l   L + G + +D  ++ellk   ++ ++k
  KKY24132.1  90 FQVFDKDLTGYIGVGQLRYILTNLGEKMSDEEVDELLKSCPEAVDQK 136
                 89999999*****************************9998887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.32s 00:00:00.82 Elapsed: 00:00:00.50
# Mc/sec: 909.60
//
Query:       KKY24133.1  [L=320]
Description: putative 1-acyl-sn-glycerol-3-phosphate acyltransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-11   42.9   0.0    6.1e-11   42.1   0.0    1.4  1  Acyltransferase  Acyltransferase
    3.2e-07   30.4   0.3    6.4e-07   29.4   0.3    1.5  1  Acyltransf_C     Acyltransferase C-terminus
  ------ inclusion threshold ------
       0.29   11.1   0.9       0.61   10.1   0.1    1.9  2  Thump_like       THUMP domain-like


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0     1e-14   6.1e-11       2     134 ..      71     229 ..      70     230 .. 0.87

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 1e-14
  Acyltransferase   2 vrvtglenlpekgpailvaNHqsylDvlllwlllyksn.gprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleeg.k 93 
                      ++ +g ++lp+++ a +vaNH s++D+ +++ l+ +s+ +  +++  ak++l+++p+lg++++++g+  i+R  +++ ++ l   +   + g +
       KKY24133.1  71 ITKSG-DKLPRGESAFVVANHISWTDFYMIQDLALDSGmL-GRCRWFAKQQLKWVPFLGWGLWAMGMPLISRAWDKDERELLRVFRGPKQYGlP 162
                      77788.9*************************99999977.9******************************8777777777777765555544 PP

  Acyltransferase  94 l.vviFPEGtrsre...................gellpfkkGlvrlaakak......kgvpivPvai 134
                      + ++ + E tr                      + l+p  +G+   ++ ++      + ++++++a+
       KKY24133.1 163 IwLIAYSESTRYTPqkylstiqwcqlnskptpkYTLWPRTRGFTATVRALReppstvTAIYDLTIAY 229
                      4499999999999999999999999999999877779999999999999998888888888888887 PP

>> Acyltransf_C  Acyltransferase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.3   1.1e-10   6.4e-07       9      46 ..     255     293 ..     250     314 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.1e-10
  Acyltransf_C   9 evhiyvrripleevPed.eeelaeWlhelfeeKDkllee 46 
                   + h++vrr+ +ee     e+ela+Wl+++++eK ++le 
    KKY24133.1 255 KFHVHVRRFAIEEFRGLsEKELAKWLEDRWVEKGRVLEG 293
                   68************9998***************999985 PP

>> Thump_like  THUMP domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.49   2.9e+03      33      44 ..     202     213 ..     201     214 .. 0.89
   2 ?   10.1   0.1    0.0001      0.61       1      28 [.     260     287 ..     260     292 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.49
  Thump_like  33 kRgfpldpeeLr 44 
                 +Rgf  ++ +Lr
  KKY24133.1 202 TRGFTATVRALR 213
                 8********999 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0001
  Thump_like   1 grafevlevlpfskkklkkllrergigk 28 
                 +r+f ++e   +s+k+l k+l  r ++k
  KKY24133.1 260 VRRFAIEEFRGLSEKELAKWLEDRWVEK 287
                 69*******************8876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 2023.80
//
Query:       KKY24134.1  [L=426]
Description: putative bzip transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   10.1   0.4       0.16    9.7   0.4    1.1  1  CCDC158   Coiled-coil domain-containing protein 158


Domain annotation for each model (and alignments):
>> CCDC158  Coiled-coil domain-containing protein 158
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.4   9.1e-06      0.16     258     314 ..      68     124 ..      45     147 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 9.1e-06
     CCDC158 258 ielllqqhqdrieqliseheveitgltekassarsqansiqsqleiiqeqarnqnsm 314
                 i +l + h++r eq i   evei+gl e  +s  ++ n+  +q +    q +++n++
  KKY24134.1  68 ILMLDRTHRERKEQYIKGLEVEISGLREGYASDVTRLNTTIAQHKDALRQQQEENAI 124
                 4455578*********************99999999998877776666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       832  (0.0464053); expected 358.6 (0.02)
Passed bias filter:                      688  (0.0383736); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 3641.43
//
Query:       KKY24135.1  [L=577]
Description: putative translation initiation factor eif3 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   9.2e-209  694.7   0.0   1.1e-208  694.5   0.0    1.0  1  eIF-3_zeta  Eukaryotic translation initiation factor 3 subuni


Domain annotation for each model (and alignments):
>> eIF-3_zeta  Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  694.5   0.0  6.2e-213  1.1e-208       7     520 .]      14     550 ..       8     550 .. 0.90

  Alignments for each domain:
  == domain 1  score: 694.5 bits;  conditional E-value: 6.2e-213
                 XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXX..XX.XXX.........XXXX CS
  eIF-3_zeta   7 ednedgWGPseelpeefkdipyapfsksdklgkvaDwtseakekrekrraekygagsasafayqheedessFslVdnkkakkkkkeak.......rqrr 98 
                 ++ +++WGP + + ++++ ipyapfsk+dklg++aDwt+e k+ ++    + ygag++s fa+q +edessFs+Vdn++++k +++++       r r+
  KKY24135.1  14 NS-DEEWGPANVTSTTLDGIPYAPFSKGDKLGRMADWTMEGKD-HQ----QIYGAGTSSLFAVQVAEDESSFSVVDNSRTTK-TRTFGrgggtvfRGRG 105
                 33.359****877777**********************99333.22....36**************************9998.5555336777765455 PP

                 XXXXXXX........XXXXXXXXXX...........................XXXXXXXXXX-----TT-EEEEEEEHHHHHT--TT----EEEEEEEE CS
  eIF-3_zeta  99 grgeekke.......rqqqqalnkkqgeeekeerskkkkkkkkgrrkgwkdkkdkeqrnreasvevkpeWkvleeidfsrLsklslevkepedlesyGk 190
                 +rg+ +++       r +q +   + +++  ++r++++    +grr+gwkd+ dk+qrnr++sv+++p+W + eeidf+rL kl+l+++e+edl++yG+
  KKY24135.1 106 QRGGLAQRgrggifqRAGQPRAGAQGQDRYYDNRGGRG---GRGRRFGWKDY-DKPQRNRDSSVTIRPDWAMKEEIDFNRLLKLNLDTPEGEDLDNYGF 200
                 55555555655555333344344444444444444444...378999****9.********************************************** PP

                 E-BB-GGGGG-BTT.B-EE------B-----GGG-HHHHHHTT.TS-SEEEEHHHHHHHHTGGG--S-EEEEEEEETTEEEEE--TTSCTTS--SSTTS CS
  eIF-3_zeta 191 leyYdksydrittk.nekpLqkldrvfynvttsdDpviqelakekkatvfaTDailslLmcatrSvysWdivvtkkgnklfldkrdgseidlltVnEta 288
                 l+yYd+syd++ +k +e++Lq l+r++ynvtts+Dpviqela++++at+faT +ils+Lmca+rSvysWd+v+ k+gnk f+dkr++s+idl+tVnE+a
  KKY24135.1 201 LYYYDRSYDKAPVKsSERKLQTLERAAYNVTTSQDPVIQELAEKDEATIFATSDILSMLMCAPRSVYSWDLVIIKQGNKFFIDKRPDSSIDLVTVNENA 299
                 ************763699********************************************************************************* PP

                 SS--...........-S-TTSTTSHHHHHHHHHHHHHHHHHHTBET.TS--EE-SB--TTS-GGGCC.CB-SEEEEEEEEE-STT.....-EEEEEEEE CS
  eIF-3_zeta 289 adppl..........edeedsiNspssLslEAtlinqnfsqqvlkeseeekvkfeepnpFvseeeeteelasvaYrYrkfdLsde..eekielvvRtev 375
                 ad+pl            + dsiN+ps+L++EAt+in+nfs q++ e++++kv+f +pnpF++++eete+las+aY+Yr+fdLs e  e++++lvvRtev
  KKY24135.1 300 ADAPLeaeatqnqqqVVKADSINTPSNLAIEATIINHNFSFQTVIENQSSKVEFPHPNPFYNPSEETEPLASKAYKYRRFDLSLEadEDPLHLVVRTEV 398
                 *********99887655789***************************99***********************************88899********** PP

                 SEEEE-TTS..EEEEEEEEEEES-HHHHT-..-.-HHHHTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHT-SEEEEEEEEEEETTEEEEEEEEEEEEE- CS
  eIF-3_zeta 376 davlkgkekeqkqfvtikaLnEfdskaqga..a.dWrskLdsqrGAvlatElknNscklakWtvqalLagadqlKlGyvsRanpkdaskHviLgvqsyk 471
                 dav+k++ + ++q+++ikaLnEfd+kaqga  a dWr+kL sqrGAv+atE+knNsckla+Wt+qa+La+adq+KlG+vsRanpk++++Hv+Lgv  yk
  KKY24135.1 399 DAVTKNNISGEDQYLVIKALNEFDHKAQGAggAlDWRTKLASQRGAVVATEMKNNSCKLARWTTQAILAKADQMKLGFVSRANPKSNANHVVLGVVGYK 497
                 *****99998899****************99967***************************************************************** PP

                 HHHHHHHTT--HHHHHHHHHHHHHHHHTS-S....EEEEEEE-TTSSEEEEEE CS
  eIF-3_zeta 472 pkdlaaqinlnldNaWgivrtivdlvmkqpd....gkYvllKdpnkpvirlYs 520
                 p+++a+q+nl l+N+Wgivrtivdlv +++     +kYvl+Kdpnkp+irlY+
  KKY24135.1 498 PREFANQMNLALNNGWGIVRTIVDLVRRMSGeednKKYVLVKDPNKPLIRLYE 550
                 **************************98764444589***************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.49
# Mc/sec: 3530.93
//
Query:       KKY24136.1  [L=528]
Description: putative cytosine permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-29  101.0  29.1    8.6e-29  100.6  29.1    1.2  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6  29.1   4.8e-33   8.6e-29       3     382 ..      75     452 ..      73     489 .. 0.86

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 4.8e-33
  Transp_cyt_pur   3 pe.eeRtwktlnlfsiWlganlnintwvigalg.lalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvv 95 
                     pe ++   ++ln++ +W++  +++ t  +g lg  ++gL++ +s++++ +g  +ga + a +gl G+k+G+++ ++sR+sfG +g+ l ++l  v
      KKY24136.1  75 PEeAKQPPSILNALLMWFSVTMHVGTVPLGYLGpEVFGLSFSASMSAVTIGICLGALLPAYTGLLGPKLGMRQIATSRYSFGFWGAKLCSVLN-V 168
                     5535666799***********************7899*************************************************9999995.5 PP

  Transp_cyt_pur  96 iaivwfgvqawiGsealllmlgkifgkwleiggailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaegGpv 190
                     +  ++f+v +++++ ++l+ +     k + + g+i++  +  + ++f+f ++++++++ ++ ++  f v+ a+  + +   ++++  +  ++G+ 
      KKY24136.1 169 VVGGGFAVVNVVVVGQILSAVSDF--KMSIVVGCIIIGVISYFFSIFGFRLIHTYEKYSWMVAFVLFIVLYAQTGKHVDSSVSSYDSGIEGVGDW 261
                     556888888888888888888888..5555555********************************************************999999 PP

  Transp_cyt_pur 191 ldkavklgkselflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakfdet.... 281
                     l+          f++  ++ ++g+ ++++   D+  + ++++s++ki+ ++ ++l++++l++  l+++++ a++ a++   +d   + d      
      KKY24136.1 262 LS----------FMAIQFSSASGWCSIAA---DYYCNYPKTTSKAKIFGLTWAGLVIPTLFTTWLGVVLGNATFTAEYQPYYDAYYNGDHGfggl 343
                     99..........55666999*********...*****************************9999999998887776555554333333336777 PP

  Transp_cyt_pur 282 .......agvllililvalaqlgvnisanllsagldlaallPkkinikrgsliaavialvivpwkllsssskl..ftaflsllavflspvagvii 367
                             g + +++++ + ++  n+ a  +s+gl l+ l  ++ +i  + ++  + alv+v++   + +s +  + +f+s+l++    ++ +++
      KKY24136.1 344 llaawrpEGWAKFALVISIFTVCGNNIAVFYSSGLSLQLLGHYFHAIP-RFIWSFLCALVVVILAIAGRESLStiVSNFVSMLGYWAVCFTFILM 437
                     77777776889999999999******************9998655554.5678888888888888888887766688999999999999999999 PP

  Transp_cyt_pur 368 adyfvvrrgylklaa 382
                     ++ +  rr++    +
      KKY24136.1 438 IEDLWFRRRDGYDLH 452
                     988888887765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       967  (0.053935); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4075.93
//
Query:       KKY24137.1  [L=470]
Description: hypothetical protein UCRPC4_g02603 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        6.2    6.8   6.2         10    6.1   6.2    1.2  1  Neur_chan_memb  Neurotransmitter-gated ion-channel transmembr


Domain annotation for each model (and alignments):
>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   6.2   0.00056        10      81     208 ..     304     433 ..     302     445 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00056
                     HHHH-S-S---HHHHHHHTTHHHHHHC--------------......--------------------------------------SS---TTGGG CS
  Neur_chan_memb  81 vhhrsprthtmpawvrkvfldklprllfmkrpsevkdnekkl.....ssgasseaeelilskskseskkaklseeqgsekastckckckegeeas 170
                     ++hr+ ++  +p  v++  +     + +m+ +s+++++ +++     +s+++++++++ + +s   ++ka++ e+ + +++s+ k   +  +++ 
      KKY24137.1 304 FTHRQMQRGPKPTGVEHRRTGSQASIAGMRSKSAAHPQSRQMsiggsPSVQPTRNASYASPRS---LRKASHAESTHRRSPSPTKSRVSLATASP 395
                     6899999999999**********************9999999666555555555555444433...33333334444444444444444444444 PP

                     --.....-----TTTTTHHHHHHHHHHHHHHHHHHHHH CS
  Neur_chan_memb 171 pstqlskeelspelkkavegvkyiadhlraededksvk 208
                     + +++ k + s +l+ +  +v+   +++ra++ +++++
      KKY24137.1 396 RRATAPKPHTSGTLTPTSPHVQKFEKSMRAKERKEDED 433
                     44444446666677777777777777777666555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       998  (0.055664); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3377.54
//
Query:       KKY24138.1  [L=425]
Description: putative mosc domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-26   91.7   0.0    5.9e-26   91.0   0.0    1.3  1  MOSC      MOSC domain
      2e-08   34.2   0.0    3.3e-08   33.4   0.0    1.4  1  MOSC_N    MOSC N-terminal beta barrel domain


Domain annotation for each model (and alignments):
>> MOSC  MOSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.0   6.6e-30   5.9e-26       3     131 .]     284     413 ..     282     413 .. 0.91

  Alignments for each domain:
  == domain 1  score: 91.0 bits;  conditional E-value: 6.6e-30
                 X---GGGGSEEEEETHHHHHHHHHS..GGGGG-STTTT--SEEE.S-.......-TTT-BTT-E.EEETT.................EE----THHHHH CS
        MOSC   3 kihggdekavllisresldalneelkegrsveldpgrfreNivv.ggaaafeEdtwkelrigdrrfrlggacsRcqmvnvdqetga.rprepcktlakf 99 
                  + ++d  +++l s +s++++ e++k     ++ ++rfr+N++v gg ++++Ed+wk+++ig++++ + +++ Rc+++nvd++t++ ++ ep +tl+kf
  KKY24138.1 284 VVGFQDAYPLHLLSVASVQDIGEKVKHAI-PNFTARRFRANLIVvGG-KEYDEDDWKRIQIGEVEYYCACHTVRCKLPNVDPDTAVrDRFEPDRTLKKF 380
                 6789*********************5544.79************555.99************************************66679******** PP

                 TTHHHHHHHHT---EEEEEEE-E.EEETTS-EE CS
        MOSC 100 rrvdkrvkgkgrfGvylrvleeg.tvrvGdeve 131
                 rr+d++ +++ + G+ l+++++   +rvGd v+
  KKY24138.1 381 RRIDAGDPTNACLGMQLVPVQQHgKIRVGDDVR 413
                 ***************998665544******996 PP

>> MOSC_N  MOSC N-terminal beta barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   3.7e-12   3.3e-08       2      38 ..      82     117 ..      81     159 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 3.7e-12
      MOSC_N   2 arvssLyvyPiKsckgvslseaevtaaGllalDRefl 38 
                 ++v+ Ly++PiKsc++v+l ea v ++Gl+ +DRef 
  KKY24138.1  82 GNVKALYIHPIKSCAAVELDEAGVCPSGLV-WDREFS 117
                 689*************************96.****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2716.85
//
Query:       KKY24139.1  [L=618]
Description: putative purine permease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-68  231.6  25.0    3.3e-67  226.9  25.0    2.0  1  Xan_ur_permease  Permease family


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.9  25.0   1.8e-71   3.3e-67       4     388 ..      76     503 ..      74     504 .. 0.89

  Alignments for each domain:
  == domain 1  score: 226.9 bits;  conditional E-value: 1.8e-71
                      HHHHHHHHHHHHHHHHHHHHTTTS-............H.HHHHHHHHHHHHHHHH.........HTTT-----EEE-GGGHH....HHHGGG-. CS
  Xan_ur_permease   4 lllglQhllamfaalvvvPllvgda..lglaeelr.qlisatllasGiatllqll.........ifgirlpillgssfafvt....almialGs 81 
                      l+lg+Qh lam+a+++ +P++++ +  ++l+ e++ +l+s++l+++G+ + +q++         ++g++l ++ g+sf  ++    a+++    
       KKY24139.1  76 LILGFQHALAMLAGVISPPIIISGQsgANLTGEVSqYLVSTSLIVCGLLSAIQITrfhfyktpyYLGTGLISVVGTSFSIIPvatgAFSQ---- 165
                      79******************9987755555666666********************9999999999************999955554444.... PP

                      .................HHHHHHHHHHHHHHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-...BTT........ CS
  Xan_ur_permease  82 a..............edieialagllgallvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaa.veg........ 152
                      +                   ++++llg+ +v ++l i +s+ +   +l +l+pP+vtgp+v+liG+ l++ +++k +gg  +  +         
       KKY24139.1 166 MyangycpsdadgnpLPCPRGYGALLGTAIVCSLLEIALSFCKPN-WLKKLFPPLVTGPTVMLIGIHLIESGFEKWAGGSGScISRpttgdyql 258
                      2455699****99997899*************************6.***************************999998765543323333333 PP

                      ..........B---HHHHHHHHHHHHHHHHHHHSSSTTTTTHHHHHHHHHHHHHHHHHHHTTSSHHHHS-SS-----------HH..H.HHHHT CS
  Xan_ur_permease 153 .........ltvvslkllllavvvllvilllsvflkglfsqlpiLigiiagwllalfmgivnlspevseapwfqlpsplkfgtplfnlgliltv 237
                               l+ +s ++++l++ v + i+l+ ++ ++++++ ++++g+++g+++a+++g ++ s+ ++eap +++    + ++ ++  +++l +
       KKY24139.1 259 cpsnsaphaLPWGSAEFIGLGFLVFVSIILCERYGSPIMKSCAVVVGLLVGCIVAAACGYFDRSS-IDEAPAASFIWV-HTFPLSIYGPIVLPL 350
                      33334556678899999************************************************.777777776533.4444447789***** PP

                      HHH.HHHHHHHHHHHHHHHHHHTS-TII...IIIHHHHHHHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHH CS
  Xan_ur_permease 238 lavalvavvesvGdiravakvvgrslkp...kpdlrralladGlatllsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipkl 328
                      lav++v+++e++Gdi+a+ +v+++++++   +++++ ++ladGl+ ll+gl   +p++t+a+n+Gv++lt+ a+r+ + +   +li++g+++k+
       KKY24139.1 351 LAVYIVLMMEAIGDITATCDVSRLEVEGkifDSRIQGGVLADGLNGLLAGLCTLTPMSTFAQNNGVISLTRCANRKAGYCCCFFLIIMGIFSKF 444
                      ****************************99**************************************************************** PP

                      HHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-SHHHHHHHHHHHHHHHH-----S CS
  Xan_ur_permease 329 aallssIPepvlgGvllvvfgmiaasgvsnlqtvdldsarnllivavslvlGlgvatvpe 388
                      aa l +IP+ vlgG+++ +f+ +a+sg+++++tv ++ +rn +i+  ++ +G g++ vpe
       KKY24139.1 445 AAALVAIPDSVLGGMTTFLFSAVAISGMRIISTVPFT-RRNRFILTAAMSIGFGATLVPE 503
                      *************************************.9999999999999998888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3977.07
//
Query:       KKY24140.1  [L=563]
Description: putative aquaglyceroporin like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-39  135.5  11.5    2.8e-39  135.2  11.5    1.1  1  MIP       Major intrinsic protein


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.2  11.5   1.5e-43   2.8e-39       7     227 .]     272     509 ..     265     509 .. 0.93

  Alignments for each domain:
  == domain 1  score: 135.2 bits;  conditional E-value: 1.5e-43
                 HHHHHHHHHHHHHHHHHHHHHHHHCCCSSCSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHHCHT-S-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHH CS
         MIP   7 flravlAEflatlllvfigvgsalnvkkkvsslaslvsvtleavalafglalavlvylaagiSGaHlNPavTlallvarkisllrailYivaQllGaiv 105
                 +++++lAE l+t++   ig+  ++ v + +     +v ++++++++a+g++++++vy+a+giSGaHlNP + + l ++r ++ ++  +Yi+aQ++Gai+
  KKY24140.1 272 MWKEFLAEWLGTTVGFTIGISGTM-VRTIS----PNVYGNVTTSSFAWGFGIMIGVYIAGGISGAHLNPCISIVLSIFRGFPWKQCGAYIIAQIIGAIT 365
                 59***********99999998555.33322....34678999********************************************************* PP

                 HHHHHHHHCHHH..........HHHTTTTSSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHCSTTSSSSTCHGHHHHHHHHHHHHHHHHHHHHST-SSHH CS
         MIP 106 aaallklltkgl..........esraglfanslkpglsagqalvvEiiltfvLvlvvfaltddkrkvslgelaplaigllvaliilvgipltGaamNpA 194
                 a a+ ++l++ +          e     f +++k+ +s  +a+  E++ t++L  +v+al dd ++   + + +  igllv++ +++   +tG   NpA
  KKY24140.1 366 AGAICYGLYHDAiihyqgslrpEGSGVVFYTQPKSWVSPPTAFWNEFVGTAILTGTVLALGDDSNAPAGAGMGAFIIGLLVTALVMAFSFQTGGCFNPA 464
                 ***********99******99988899999************************************998889*************************** PP

                 HHHHHHHHHTH............STTTTHHHHHHHHHHHHHHHHH CS
         MIP 195 rslgpavvlnk............fedhwvylvGPliGailgalvY 227
                 r++gp++v+              +   w ++ + + Ga+ g+ vY
  KKY24140.1 465 RDIGPRLVALVagygtetftamgWWWLWGPWGATISGALFGGAVY 509
                 ********998899****999999999999999999***999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.52
# Mc/sec: 3272.57
//
Query:       KKY24141.1  [L=479]
Description: putative acyldesaturase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-19   71.2  10.9    1.2e-19   71.2  10.9    1.5  1  FA_desaturase  Fatty acid desaturase
      1e-16   60.8   0.1    2.5e-16   59.6   0.1    1.7  1  Cyt-b5         Cytochrome b5-like Heme/Steroid binding domain
  ------ inclusion threshold ------
      0.022   14.4   0.3      0.062   12.9   0.1    1.8  2  DUF1189        Protein of unknown function (DUF1189)


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2  10.9     2e-23   1.2e-19       7     250 ..      89     315 ..      83     318 .. 0.76

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 2e-23
  FA_desaturase   7 llalllglfllgitgslaHeaaHgalfkkrklnrwlndllgallglplgisysawrisHlrHHaytngpdeDpdlaplalsrfeglfryllrlllg 102
                    ++ + +++  lgit+++++ +aH +++ ++ + r++ ++l    g ++  s  +w ++H+ HH+y  ++d+Dp+      s ++gl + +++++l+
     KKY24141.1  89 AVLYYFATG-LGITAGYHRLWAHTSYS-ATLPLRIFLAAL---GGGAVEGSVRWWARDHRAHHRY-TDTDKDPY------SVRKGLLYSHIGWMLM 172
                    222444444.89999********8888.555555554666...9999999***************.6666****......6699999999****** PP

  FA_desaturase 103 llvlgwllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglalllwlvplllllfllalvl.nyveHyggdwgerqvet 197
                     ++++       + ++ + + +++p+ ++++k +l  +l++ l++  l++++++  +l++++++  l+++++  a++  n + H+    g++++ +
     KKY24141.1 173 KQNPK------RIGRTDISDLNEDPVVVWQHKNYLKVVLFMGLVFPTLVAGICWGDFLGGFVYGGILRIFFVQQATFCvNSLAHWL---GDQPFDD 259
                    *9999......334999999999999999997666666666666666666666666666658888888887777766678888865...5555555 PP

  FA_desaturase 198 sasirsaswllnlltgnlnyHieHHlfP.....gvpwyrLpelhrrlrellpehglpy 250
                    ++s r ++ l +l+t++ +yH+ HH fP     ++ w++++  ++    ++++ gl+y
     KKY24141.1 260 RNSPR-DHVLTALVTLGEGYHNFHHEFPsdyrnAIEWFQYDPTKW-FIWTMKQVGLAY 315
                    55555.99999999**************************99886.444466666655 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.1   4.2e-20   2.5e-16       8      73 ..     364     430 ..     357     431 .. 0.91

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 4.2e-20
                 TECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTT..GGCHHHHHHHHGGEEEEE CS
      Cyt-b5   8 hngkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvv..hsekdaekllkkylvGkl 73 
                 ++++++ ++a+ g V+Dvs+f+++hpGg+++i++  GkDat+ f+  v  hs++ a++ll +++vG++
  KKY24141.1 364 QAKNGRGLIAVAGVVHDVSDFIKDHPGGKAMIKSGIGKDATAMFNGGVylHSNA-AHNLLSTMRVGVI 430
                 45667999*****************************************99888.8**********87 PP

>> DUF1189  Protein of unknown function (DUF1189)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     1e-05     0.062     137     215 ..      42     122 ..      24     126 .. 0.74
   2 ?   -1.9   0.0      0.33     2e+03     127     148 ..     314     338 ..     301     350 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1e-05
     DUF1189 137 kltkedlreflssvksilkiilvlilivlflvsllltl.....idalilaliglilarilkiklsYkqlfkisvyalTlPtiln 215
                  +t++ ++++     +  +++ v++++++ l+ +++ +     ++++i+a++ ++++  l+i+  Y+ l+  + y+ TlP+ ++
  KKY24141.1  42 HITETPITKYN--WYKHVNWLNVTLIVLIPLYGCIGAFwtplqLKTAIFAVLYYFATG-LGITAGYHRLWAHTSYSATLPLRIF 122
                 55666666665..556667777777777878888888856656777777777777666.59999****************9766 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.33
     DUF1189 127 sysysdledqkltkedlrefl...s 148
                  y++++++ ++++k +++++    +
  KKY24141.1 314 AYDLKQFRANEIEKGRIQQMQkklD 338
                 5899999999999999999984443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.52
# Mc/sec: 2770.92
//
Query:       KKY24142.1  [L=706]
Description: putative thimet oligopeptidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   7.2e-147  490.3   0.2     1e-146  489.8   0.2    1.2  1  Peptidase_M3   Peptidase family M3


Domain annotation for each model (and alignments):
>> Peptidase_M3  Peptidase family M3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  489.8   0.2  5.8e-151    1e-146       2     457 ..     217     703 ..     216     704 .. 0.97

  Alignments for each domain:
  == domain 1  score: 489.8 bits;  conditional E-value: 5.8e-151
                   HHC-S-HHHHHHHHHHHCTTTCCSS..THHHHHHHHHHHHHHHHHHHTT-SSHHHHHHTTSTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Peptidase_M3   2 lkespdrelRkeayeashskaaeqrntlensklleellklraelAkllgyesyaelaledkmaknpetvldfleelvkklrpllekelkllkelkkk 98 
                   lk+++++e+Rk++++a+ +k++      +n+++++e+++lr+e A+llgy+++a+++ledkmak p tv++fl +l++kl++ +e e+++lkelk++
    KKY24142.1 217 LKYAKSEETRKRLFIANENKCN------QNVPIFREAIILRDEAARLLGYPNHAAFRLEDKMAKEPGTVDKFLGNLRSKLKEGGESEIQALKELKQQ 307
                   89******************99......78******************************************************************* PP

                   C.....CT-S.SS--CCCHHHHHHHHHCCCCS--CCCCGGG-BHHHHHHCHHHHHHHHHTEEEEEETTS.............--SSTT-EEEEEEET CS
  Peptidase_M3  99 e.....lgle.gelqpwDvaYYsekqreekydldqeelkeyfpletvleGllelfeeLfGikfveekdak...........gevwhedVrkleVvde 178
                   +        +   +  wD++YY++ ++e +y+ldq+ ++e fpl+t++ G+le+feeL G+ f e+++++           + vwh++V++++V+d+
    KKY24142.1 308 DveaqsK-KFdDHYFLWDHRYYDRLMEERDYQLDQQLISEWFPLQTTIRGMLEIFEELMGLVFIEVTGEDrdaiaesgngkDIVWHDEVQLFSVWDD 403
                   9888642.3357999********************************************************************************** PP

                   ..TT-EEEEEEEEEEC--TTS-SS-EEEEEE--B..TTS-B--EEEEEEEEE---BTTS--B--HHHHHHHHHHHHHHHHHHC--BSSGGGSTT-S- CS
  Peptidase_M3 179 .ilsegligeiylDlyerkgKrggAasfglvksr..edgtrqlpviylllNftkpsskkPsLLtldevetLfHEfGHsmHsllsrteysnvsgtnvp 272
                     + ++++g++ylDl++r+gK+g+Aa+f++++++  e+gtr++p+++l++Nf+kp+ kkPsLL++dev tLfHE+GH++H+l+s+t y++++gtn+ 
    KKY24142.1 404 eGEGGEFVGYLYLDLFPRQGKYGHAANFNVQPGFttENGTRRYPATALVCNFSKPTPKKPSLLKHDEVVTLFHELGHGIHDLVSKTTYARFHGTNTV 500
                   9999*****************************9877************************************************************ PP

                   CCCCCHHHHHHHHGGGSHHHHHCC-B-TTT--B......................--HHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHCTT-TCCGH CS
  Peptidase_M3 273 idfvElpSqlmEnlltepevlkslskhyetgea......................ipeelleklikaknvnaalellrqlvfaafdqelHeeaeeeq 347
                   +dfvE+pSq++En++++p++lksls+hy+++++                      i++el+e++ikak+ n+al++lrql+f+ fd+++He +++e+
    KKY24142.1 501 RDFVEAPSQMLENWCWTPSQLKSLSRHYSSLSPeyykaweesageraakgkpsesITDELIENMIKAKHLNDALFNLRQLHFGIFDMTIHEPKRHED 597
                   ************************************************************************************************* PP

                   H....HHHHHHHHHHCTTSCTTBT.......TSSGGGC-CCCHTSS-TTTTCHHHHHHHHHHHHHHCCHHCCTT-CCHHHHHHHHTTTTTTSS-HHH CS
  Peptidase_M3 348 ilkkdlletyaelrkkflglpvap.......deasqasFghlfahgYaanYYsylyaevlaldifekffeedplnretGeryrkeiLsrGgskdple 437
                    ++ +++ety+elrk+++ ++ ++       + + qa+Fghl+ +g          ++v+++d+f+++f++dp+n + G+ryr ++L++Ggs+d+++
    KKY24142.1 598 LEQMKISETYNELRKDISRIEGPEslgegyaWGNGQATFGHLM-GG----------SQVYSADMFYSVFKKDPMNGKEGRRYRHTVLEKGGSQDEMQ 683
                   *9999***************99999999999***********8.76..........89*****************99******************** PP

                   HHHCCCSS---SHHHHHHCT CS
  Peptidase_M3 438 llkkflgrepsadallkalg 457
                   +l +flgrep++da++++lg
    KKY24142.1 684 TLVDFLGREPKPDAFYEELG 703
                   *****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.36s 00:00:01.02 Elapsed: 00:00:00.56
# Mc/sec: 3824.96
//
Query:       KKY24143.1  [L=357]
Description: putative synaptobrevin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.5e-06   25.7   0.1    1.4e-05   25.0   0.1    1.4  1  Use1         Membrane fusion protein Use1
  ------ inclusion threshold ------
      0.083   13.0   0.3        4.3    7.5   0.0    2.5  2  RhoGEF67_u2  Unstructured region two on RhoGEF 6 and 7


Domain annotation for each model (and alignments):
>> Use1  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.1   1.5e-09   1.4e-05     116     243 ..     215     348 ..     136     351 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.5e-09
        Use1 116 kyqkelrkellgkndsssspekekeskkk..........ksdedldavlkkhenlqEklaeemlsLarnLKenslaasqiikkDtetlsksekaadqnl 204
                 +     r + l++ + sssp +                  ++ + d++l +    q  l+e m  La +L+ +++  s+ +   t  l++ ++ +++n 
  KKY24143.1 215 TRLLR-RRRGLRSPSPSSSPTR------AhttsashdknATTLSSDQALTRDATTQLALTESMSRLATQLRLSAQSFSNQLTIATRLLDAAAEGMEKNS 306
                 11112.2222222222222222......12222334655778899****************************************************** PP

        Use1 205 aslkkeserlee.h.skskvkcllwlllfv.vlvvFismvlf 243
                 + ++   +r+   +  +    ++  ++l + +l + i m+++
  KKY24143.1 307 TGMEVTGKRMGMlKrMSEGEGWWGRMMLYAwILGLWILMIVV 348
                 *********988544777778888777765266688888876 PP

>> RhoGEF67_u2  Unstructured region two on RhoGEF 6 and 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0   0.00048       4.3      15      91 ..      40     122 ..      33     136 .. 0.79
   2 ?    2.9   0.1     0.012   1.1e+02      52     103 ..     209     262 ..     197     268 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00048
  RhoGEF67_u2  15 kiskpwslsclrpap......plrpsaalgykermsyilkdsskspktvkkflpkrkterkpsdeefalrkstaaleedaqil 91 
                  +  k+++ s ++p p      p + s  l   e +   l    +  ++vk   +kr +++k sd   ++r   a +ee a+i 
   KKY24143.1  40 DAEKSFTASHIQPVPfqikanPYHRSRLLYNLEHARTLLLRLEHGAQSVKIQSQKREAQKKISDWRAIIRGLKAEVEEWARIY 122
                  55677777777775533333366667777777888888888899999*******************************99985 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.012
  RhoGEF67_u2  52 kspktvkkflpkrkterkpsdeefalrkstaaleed..aqilkvieayctgasl 103
                    p++  ++l +r+  r ps   +  r  t++   d  a  l   +a    a++
   KKY24143.1 209 SQPQQSTRLLRRRRGLRSPSPSSSPTRAHTTSASHDknATTLSSDQALTRDATT 262
                  46899999************9999999877654444115566655555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       937  (0.0522617); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 2148.45
//
Query:       KKY24144.1  [L=1811]
Description: putative nucleoporin [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-98  328.8   0.2    6.1e-98  328.0   0.2    1.4  1  Nup188_C       Nuclear pore protein NUP188 C-terminal domain
    4.6e-55  187.0   2.6    2.2e-48  165.0   0.8    3.2  3  Nup188         Nucleoporin subcomplex protein binding to Pom3
  ------ inclusion threshold ------
       0.12   12.4   0.1       0.32   11.1   0.1    1.6  1  Frataxin_Cyay  Frataxin-like domain


Domain annotation for each model (and alignments):
>> Nup188_C  Nuclear pore protein NUP188 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.0   0.2    1e-101   6.1e-98       1     370 []    1429    1805 ..    1429    1805 .. 0.92

  Alignments for each domain:
  == domain 1  score: 328.0 bits;  conditional E-value: 1e-101
                  HHHHHHHHHCC-SSTT....STTTHHHHHHHHHHHHHHHHC-S------------...-----HHHHHHHHHHHTHHHHHHHCT-------...--- CS
    Nup188_C    1 LLktvwetiraveedfeealaeedveyyrtLLkvLflalrahaeaeskaeeeasakkksesvsvlqivleilkkvvakgfrslvtliHdee...akv 94  
                  LL+ +we++r +e +fe+ala++d+ y+rtL +vLflal++h+++++ +++++     s ++ +l i+leil+ vva gfr ++ ++Hde+   ++v
  KKY24144.1 1429 LLSHAWESMRFREANFENALANDDLGYWRTLAEVLFLALQFHTRSKTVDDTARPP---SLKSDTLPILLEILTVVVALGFRGMAGVLHDEQipaETV 1522
                  899****************************************998876554443...6688999************************9644489* PP

                  -HHHHHHHHHHHHHHCCSCCCCCSHHHHHHHHHHTTCHHHHHHHHHHCCGG-TTS......S-HHHHHHHHHHHHHCTSHHHHHHHHHCTHHHHHHC CS
    Nup188_C   95 sPeDlalltaiLqaclavpgieqlqeqilnilasndtvrvatsLfSWsdklaveg......DPvYGeLsilfLleLSslpalAEqlAvdgvLsqlss 185 
                  +P+D+ ll +iLq++l++p++ +l+++i ++l+s+d+++ a+ LfSW+  l+         DP++Ge+s+ fL++LS+lp+lAE lA  ++Lsqlss
  KKY24144.1 1523 TPKDFGLLLGILQTSLRIPSLPRLTSDISEHLISTDVAKSAVLLFSWAHTLVLPSsttndlDPIFGEISLSFLVSLSTLPLLAECLATSAILSQLSS 1619
                  ***************************************************9854456677************************************ PP

                  SCHHHHCTSTT..--SS-S-H.CCHHHHHHHHCTHHHHHHHHHCCTTTSSHHHHHHHHCT-HHHHHCCCCTT-----------------B-SHHHHH CS
    Nup188_C  186 anltkylrrek..vspfdeaa.vaqRlysiWakgiLPLlLNlLtavgatvApEvaafLnqFpelLkrsverleapeasrtssskeakkkitllaasE 279 
                  ++lt++++  +  vspfd+++  ++RlysiW+ giLPL LNlL +vg+ +A+E+aafLnqFp++L+++++ l+ +             +i+l+ ++E
  KKY24144.1 1620 THLTQIITDGRhpVSPFDTKSsLSRRLYSIWSTGILPLSLNLLSHVGRNFASEIAAFLNQFPAQLTQAASLLSPS------------DTIALSKTNE 1704
                  *******987778*****87615799***************************************9998766532............3699****** PP

                  HHHHHHHHHHHHHHHT......T-SS----.----HH...HHHHHHHHHHT-HHHHHHHB---SHHHHHHHHS---.SS-S-SSHHHHHHHHHHHHH CS
    Nup188_C  280 vhsLalltrilealre......vnardipe.vewdaa...svkedvefwlssrklLrerlvplgerelelarkkaedesskaenrLeekvvaeleav 366 
                  +  L+l++++l+a+r+      v+a +ip+ v wd++   +++ed+e +l+sr  Lr+ +++++++e e+ + k++++++++e+ Leek+v+e++ v
  KKY24144.1 1705 IFTLTLVSYVLDAYRTagpsagVDALEIPKlVGWDEKgrkELREDIEDLLESRMRLRKCILATNAKEGEMLKAKPTQQGQGHESLLEEKIVEEMKGV 1801
                  ********************9999****98458**752227999***************************************************99 PP

                  HHHH CS
    Nup188_C  367 rdvL 370 
                    +L
  KKY24144.1 1802 LIIL 1805
                  8776 PP

>> Nup188  Nucleoporin subcomplex protein binding to Pom34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1     0.016        94      24      94 ..      71     141 ..      51     158 .. 0.64
   2 !   18.6   0.0   5.9e-08   0.00035     144     299 ..     260     430 ..     232     449 .. 0.79
   3 !  165.0   0.8   3.6e-52   2.2e-48     333     925 ..     499    1159 ..     474    1160 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.016
      Nup188  24 ssekknkktk..elslrgilyniteknvedaeklsklLdldakeslrvisqtlkr.ekrklkddlekvlenerl 94 
                 s+++ ++kt   +++ ++  ++  ++ ++da+ lsk  +ld+  +lr+++   ++ +k+kl+   + + e er 
  KKY24144.1  71 SKSDFETKTAaiNITPASNGQYDIDQIKSDALWLSKEVNLDEVSALRIVVLEWQNrSKSKLR---HGFTEAERA 141
                 333333444400444444444677788899******************99877773555444...355555555 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 5.9e-08
      Nup188 144 klisllqklieeltseeastkekneelseelqeliasenlleiiellkillllilnse..vpkeevekwfkllketnrrqefkhlldese.sdeelvkr 239
                 +   +l++ +++l s   +   k+e+  +++++++   nl  +i  l+i++l i   +  ++ + v++w+++  + +    f+  +++s+  +  l+  
  KKY24144.1 260 RCTRKLESYVDQLASGCGIF--KAEGGRDDIDDAWTRINLQQMISTLNIMFLHIRSCKkvFTASVVLQWLRFAAQYD----FLERFKPSSdAQLALIPA 352
                 44555555566665555555..5566779**********************9987766689**************99....5555555440555679** PP

      Nup188 240 iesletiislevLdL....essidlksdd...........llndeevfkkinsvlln..lsskk.npiilyaWsiill 299
                 ++++++ +sl +L L    + +id++ +            ++ d++ +++i+++ll+   +  +  ++ ++aW  +l+
  KKY24144.1 353 LRAVVVSVSLSILQLpialTMLIDMSGKTrgelepyqisaYFLDKSSVSEIHDILLTaaGGVLPvASPAVFAWGTLLV 430
                 ***************99888888888887899***********************99553455668999999977665 PP

  == domain 3  score: 165.0 bits;  conditional E-value: 3.6e-52
      Nup188  333 lasraeklnVfeylkklseilkddslyaai.....lssvitaslnfislteeisdvikevlknapne.......ivekFlen.eafekkliiarakf 416 
                  + s   + nVfe +++   +  +++  +ai     +  +i  sl ++s ++e+++++ e+l++++++        +  F+e+   +e +++ a  +f
  KKY24144.1  499 ITSAINRNNVFEIISTAAAMPGSNERSTAIqkrlcFIELISGSLGIVSYSQEVVSCLLELLNDPSQHssplqeaTALAFIEDkVLMEGVFDEALSRF 595 
                  555666778999999999988888887777222223467999**********************9762221111233566664557889******** PP

      Nup188  417 PlleesLlplikllsingefAn.....felkeLksYteklkknelddlydiddentdliklksellvk.....ppfe.......snkklslllpkgT 496 
                  P +  +Ll l ++ls+  +        +  + + ++t+  + +  +  +  +den +l+ l + l  +     p +e        +     +l  gT
  KKY24144.1  596 PYEPLPLLRLCTALSSIVDDRSvplvlSKISTMDTFTQAASPGFHQFHTIREDENANLVSLDQMLSMYeqpgvPHLEnsfaaksVDTGAGVVLRPGT 692 
                  ***878887777666543333368899***********88865444335556668899999999887644332222211000012344568888888 PP

      Nup188  497 kgkilpvakededlvtFlykYngWsllgrvLqnllkvyssksasldeekveliidildlvtkvvssdi..........svekskeileslSayvdds 583 
                   g+++  ++++  +++++++Y+g ++lg  L+ + +  + + + l+ +  +++++ + l + ++ss+           ++e+++ ile  S ++d +
  KKY24144.1  693 VGQVI--SDSRPPIIMWYHQYSGLAFLGKLLDIVKHGEDASFTYLNGSPSSIVASTITLFARLLSSSLgpgtqkdssaTTETAQSILEDASDFLDRD 787 
                  88888..688888*******************999988877777*************9999999865411111111115677778999999999654 PP

      Nup188  584 .dIievifrlleqaLh........nrnvellvsclnlltalvpnfpqrvWsyLsksdLLprkgkeGlagtilgsiElvnGeYsftisllkLtktlvk 671 
                   dIi+++f+++e++Lh        nrn+++lv+c+++++  +  +p r+W+ L++s+LL+ +g+ Gl ++i  s+E + G Y f  s + L  +l++
  KKY24144.1  788 lDIISLVFEIFERELHglryrsagNRNLDVLVACVDFFHYTIAILPGRIWPLLAHSSLLDLEGTGGLLSSIVTSVESSSGHYFFLQSCVHLFGSLIE 884 
                  6************777666666669************************************************************************ PP

      Nup188  672 esls..................lk..ndfpekskseiLsklifhlievfesfqkwrYnslkqrleigvllldvfskiLelvygidkevepeekvtkv 748 
                  e++s                  ++  +  p    s++L + +  + ev e   +wr+   +qr ei + + ++fs+i+     id + + ++k t++
  KKY24144.1  885 EAMSlpaavlmgpdtqskstvkYNniSTAPLHVVSKVLLSATQTMAEVIEASVEWRFMIPQQRSEITTGIYSAFSEIIRYALFIDDTPTLSKKLTSA 981 
                  ****99999999999999987744356788899999************************************************999999******* PP

      Nup188  749 lssaaecilslfltedsvvragqsllniiesgsdnlesielsdisgqlydqliqlslslanllisirsslnlspSplEkaLfsqspkLVdvyasyes 845 
                  ls +a  +l+ +++ ++ +  + +l++ +  g +  +  +   ++++ + + ++++l+++   i   +s+  +   lE +L   +p L+ ++a++e 
  KKY24144.1  982 LSLSALFLLEGLTSLSTTSSLASPLVRAMVGGLHLPDPSLDAPFFEARVAE-VECCLKFSFDAICSGRSIAKPVIGLETQLARSLPFLIRLVAENER 1077
                  ***********9999777999****************99999999888666.8******99877766666666779*****************9999 PP

      Nup188  846 lkkdiikLLtsLv...eapwedeyPSLLshLGeeaskalldsllsdLenkledyklkislyeFlsavmegkQdGLsilFltgr 925 
                  +  + +++ +sL    e   ++ + SLL+ LG e+s+ +l +ll + e++ ++ +   +  ++ls+++ ++Q+ ++++ ltg+
  KKY24144.1 1078 FVTQTLNVVDSLLtldESHASSSSSSLLAQLGPESSQNFL-ALLGRYETPADNFDAYCASWKLLSTLISSRQQWFAVFILTGS 1159
                  999966666666522155555556************8888.6899*********************************99985 PP

>> Frataxin_Cyay  Frataxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   5.3e-05      0.32      10      68 ..      50     107 ..      41     117 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.3e-05
                    HHHHHHHHHHHH.HHHHH--CTS.SEEEETTEEEEEETTS-EEEEEEEGGGTEEEEEES CS
  Frataxin_Cyay  10 adelldsleekleelaeeaeedeldveyssgvLtiefekkgtyvinkqppnkqIWlssp 68 
                    +de+l++l ++le+ +  ++++++d e +   ++i+  ++g+y i  q ++  +Wls +
     KKY24144.1  50 SDETLNHLATSLEDTDKPTPQSKSDFETKTAAINITPASNGQYDID-QIKSDALWLSKE 107
                    79***********9999999999*********************95.788899999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1811 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:00.52
# Mc/sec: 10558.35
//
Query:       KKY24145.1  [L=761]
Description: putative anthranilate synthase component 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-96  320.2   0.0    1.4e-95  319.3   0.0    1.5  1  IGPS           Indole-3-glycerol phosphate synthase
    1.4e-50  171.8   0.0    6.6e-48  163.1   0.0    2.5  2  PRAI           N-(5'phosphoribosyl)anthranilate (PRA) isomera
    5.7e-46  156.7   0.0    1.2e-45  155.6   0.0    1.5  1  GATase         Glutamine amidotransferase class-I
    0.00073   19.4   3.1     0.0061   16.3   3.1    2.2  1  Peptidase_C26  Peptidase C26
     0.0073   15.5   0.2       0.12   11.6   0.0    2.4  2  NanE           Putative N-acetylmannosamine-6-phosphate epime
  ------ inclusion threshold ------
      0.017   14.9   0.3        0.2   11.4   0.0    2.6  3  QRPTase_C      Quinolinate phosphoribosyl transferase, C-term
      0.036   13.5   0.1        0.1   12.1   0.0    1.8  2  His_biosynth   Histidine biosynthesis protein
      0.036   14.0   0.1        2.9    7.8   0.0    2.9  3  YjeF_N         YjeF-related protein N-terminus


Domain annotation for each model (and alignments):
>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  319.3   0.0   6.3e-99   1.4e-95       1     254 []     252     514 ..     252     514 .. 0.98

  Alignments for each domain:
  == domain 1  score: 319.3 bits;  conditional E-value: 6.3e-99
                 HHHCHHHHHHHHHHHHCCS-G..GCCCCG....-SS-SS-HHHHCHCHTTS-EEEEEE-SEETTTEESBSS--HHHHHHHHTTT.-SEEEEE--CCCC- CS
        IGPS   1 lekivaekkeevaeakkrqsl..adleaav..klakpkrsfaeaLresekklaliaEvKkaSPskgliredfdpaeiAkkyeeagAsaiSVLteekyFq 95 
                 leki+++++++va++k+ +s   +dl+aa+  ++a+p++ f+ +Lr+s   l+l+aE+K+aSPskg+i+  ++++++A+ y+ agAs+iSVLte+++F+
  KKY24145.1 252 LEKIYQHRRQAVAAQKEIPSQrpSDLQAAYglNIAPPQICFPGRLRKSPFPLSLMAEIKRASPSKGVIAISACAPAQARRYALAGASVISVLTEPEWFK 350
                 79****************999999*****9999****************************************************************** PP

                 --CCHHHHHHHH-SS-EEE.....ES---SHHHHHHHHHCT-SEEEEECCCS-HHHHHHHHHHHCCTT-EEEEEESSHHHHHHHHHTT-SEEEEESEET CS
        IGPS  96 GsledLrevrqavslpvlr.....KdFiideyqieearalgadaiLLivkvledeeleelaeaakslglevLvEvhdeeeleralklgakiiGvNnRnL 189
                 Gs++dLr+vrq+++ + +r     K+Fi+deyqi ear++gad++LLivk+l+ e+l +l+++++slg+e+LvEv++ ee+e+a+klg+++iGvNnR+L
  KKY24145.1 351 GSIDDLRAVRQSLEGMPNRpavlrKEFIFDEYQILEARLAGADTVLLIVKMLDIETLMRLYNYSRSLGMEPLVEVNTPEEMEIAVKLGSQVIGVNNRDL 449
                 **************9988777788*************************************************************************** PP

                 TTTEE-CHHHHHHCHCC-TTSEEEEESSS-SHHHHHHHCCTT-SEEEESHHHHC-TTHHHHHHHH CS
        IGPS 190 ktlevdlntteeLaklvpkdvllvaeSGiktredveklkeegvnafLvGeslmrqedvekairel 254
                 +++evdl+tt++L+++vpk+++++a+SGi+ ++dv +++++gv+a+LvGe+lmr++d++++i+el
  KKY24145.1 450 TSFEVDLGTTSRLMDQVPKETVVCALSGISGPKDVDAYHKDGVRAVLVGEALMRAKDTAAFIAEL 514
                 **************************************************************987 PP

>> PRAI  N-(5'phosphoribosyl)anthranilate (PRA) isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   6.7e-05      0.15       1      59 [.     531     593 ..     531     595 .. 0.82
   2 !  163.1   0.0   2.9e-51   6.6e-48       6     193 ..     570     756 ..     566     757 .. 0.96

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.7e-05
                 TCE----SHHHHHHHHHHTSSEEEEE--TTBTTB--HHHHHHHC...CCS--E.EEEEESSS- CS
        PRAI   1 akicgltrasdvkaavkagadelglifaesskrevseeqaqell...ekvpak.lVGVfvNqp 59 
                 +kicg ++++ + aa++agad +g+i +   +r+v+++ a +++   +++p+k + G+  N++
  KKY24145.1 531 VKICGTRTPEAATAAIEAGADLVGIILVTGRSRCVDDKTALAISdvvKSTPKKrTAGISLNAN 593
                 69************************************9987751114445446888888875 PP

  == domain 2  score: 163.1 bits;  conditional E-value: 2.9e-51
                 --SHHHHHHHHHHTSSEEEEE--TTBTTB--HHHHHHHCCCS--EEEEEESSS-HHHHHHHHHHCTECEEEE-CGG.-HHHHHHHHHHS-TTSEEEEEE CS
        PRAI   6 ltrasdvkaavkagadelglifaesskrevseeqaqellekvpaklVGVfvNqpieevlriaqelgldvvQLHGdedeqeyeellktelpvikalkvae 104
                 +  +sdv++++++++ + g+   +++  e++e  a++l ++ +a lVGVf +qp++++l+++q+lgldvvQLHG+e + e+++l++  +pvi ++++ +
  KKY24145.1 570 ALAISDVVKSTPKKR-TAGISLNANAASEFFEFTAESLATSPRALLVGVFLDQPLSYILKKQQQLGLDVVQLHGSE-PVEWASLIP--VPVIHKFSPGD 664
                 67899*********9.7888888888999*********9999999*******************************.*********..*********** PP

                 E-SSS--S-SSTT-SEEEEESSS-SSSXXXXGGGGTTSXX....TTEEEESSXXTTTHHHHHT......TXXSEEEEXGGGEEETEEXHHHHHHHHH CS
        PRAI 105 svdevkearradhvdllllDsgaGGtGelldwsliskllks...lkviLAGGLtpeNvaeaik.....legvlgvDvssGVEtnGvkDlekirkfvq 193
                     + + rr +h dl llDsgaGG+G++ld+ ++++ l+    l+++LAGGLtp+Nv+e++       ++v++vDvssGVE++G++Dl+kir+fv+
  KKY24145.1 665 ----AGIGRRGYH-DLSLLDSGAGGSGTKLDLCALKSTLDGdegLNIMLAGGLTPSNVSEVLAelgtyRSRVVAVDVSSGVESDGKQDLKKIRQFVE 756
                 ....9********.*************************88999*******************9999999*************************98 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.6   0.0   5.4e-49   1.2e-45       2     187 ..      25     213 ..      24     215 .. 0.95

  Alignments for each domain:
  == domain 1  score: 155.6 bits;  conditional E-value: 5.4e-49
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT..TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECE CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg..vegkieaikearenkiPiLGICLGmQllaiefgrkvvkekek 98 
                 liDnyds+t+n+ ++lv  g++v+v+++d+  +e+l  +k p+++++s+Gpg+p    + +i a+ ++ + kiPiLG+C+G Q+++ +fg+kv     +
  KKY24145.1  25 LIDNYDSFTWNVYQYLVLEGATVTVYRNDKITLEEL-VAKRPTQLVISPGPGHPDtdSGVSIPALLHFSG-KIPILGVCMGQQCMISAFGGKVDVTG-E 120
                 89***************************9777775.599***************999************.**************************.9 PP

                 EEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTE.....EEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHH CS
      GATase  99 ehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtaksedde.....elmeiiekknpfvgvQFHPEststpegpellfnfl 187
                   hg+t++l++d++++++gl +++ ++++H+++ ++ ++ pa+lev+ + +++       +m++++++  + gvQFHPEs++t+eg +++ nfl
  KKY24145.1 121 VLHGKTSPLRHDSKGVYEGLAQDLPVTRYHSLAGTH-ATIPACLEVSSWIAQGPnggkgVIMGVRHREHVMEGVQFHPESILTEEGRKMFTNFL 213
                 ***********************************9.9*********999876566788**********9********************9996 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   3.1   2.7e-06    0.0061     105     216 .]      94     198 ..      89     198 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.7e-06
  Peptidase_C26 105 gvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaike..laeelrveAv...ae... 192
                    ++Pilg+C G q +  a+GG++    e     + h       ++  ++ +++++++ l++  +  v+ +H+ a ++  +   l+v+++    +   
     KKY24145.1  94 KIPILGVCMGQQCMISAFGGKVDVTGE-----VLH------GKTSPLRHDSKGVYEGLAQ--DLPVTRYHSLAGTHatIPACLEVSSWiaqGPngg 176
                    89******************9754433.....223......2344555556666666655..6666666666655433455555554411133113 PP

  Peptidase_C26 193 DgviEaieseeakafvlgvQwHPE 216
                     gvi  ++++e   ++ gvQ+HPE
     KKY24145.1 177 KGVIMGVRHRE--HVMEGVQFHPE 198
                    45666666666..57899999998 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   5.3e-05      0.12      96     183 ..     422     508 ..     399     515 .. 0.84
   2 ?    1.0   0.0     0.093   2.1e+02     154     172 ..     537     555 ..     527     573 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.3e-05
                 EEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTS-.SS--HHHHHHHHHTT--EEEES---SHHHHHHHHTT--SEEEE-HHHH-HHHHH CS
        NanE  96 maDistleeglvakklGvdivGttlsGytkeeekaepDfalvkalseaglkviaeGrintPekakkaieiGvdavvvGsaitrleeia 183
                 + ++ t ee  +a klG +++G      t+ e +     +l+ ++ ++ + v a   i  P+      + Gv av vG a+ r ++ a
  KKY24145.1 422 LVEVNTPEEMEIAVKLGSQVIGVNNRDLTSFEVDLGTTSRLMDQVPKETV-VCALSGISGPKDVDAYHKDGVRAVLVGEALMRAKDTA 508
                 467899*************************9999999999999988876.5566669*************************98865 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.093
                 -SHHHHHHHHTT--SEEEE CS
        NanE 154 ntPekakkaieiGvdavvv 172
                  tPe a  aie G+d+v +
  KKY24145.1 537 RTPEAATAAIEAGADLVGI 555
                 5888888899998888755 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.8e-05       0.2      84     162 ..     422     505 ..     400     507 .. 0.80
   2 ?   -1.9   0.0       1.1   2.4e+03      86     104 ..     535     553 ..     514     559 .. 0.73
   3 ?   -0.7   0.0      0.48   1.1e+03     130     146 ..     706     722 ..     693     755 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.8e-05
                 EEEESSHHHHHHHHHHT-SEEEEES--HHHHHHHHHHHHHHSTT.....SEEEEESS--TTTHHHHHCTT-SEEEECHHCHTB- CS
   QRPTase_C  84 evevesleeleevleaeadiimLDnfsveelkkaveelkeknkr.....vlievSGgvtlenveeyaksgvdvisvgalthsvk 162
                  vev++ ee+e +++ + ++i + n + + ++  + ++++   +     v+   SG    ++v +y k gv ++ vg +  ++k
  KKY24145.1 422 LVEVNTPEEMEIAVKLGSQVIGVNNRDLTSFEVDLGTTSRLMDQvpketVVCALSGISGPKDVDAYHKDGVRAVLVGEALMRAK 505
                 69************************887766555544333333344468888999999******************9877765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.1
                 EESSHHHHHHHHHHT-SEE CS
   QRPTase_C  86 evesleeleevleaeadii 104
                  +++ e +++++ea+ad++
  KKY24145.1 535 GTRTPEAATAAIEAGADLV 553
                 5778888999999999887 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.48
                 EEEESS--TTTHHHHHC CS
   QRPTase_C 130 ievSGgvtlenveeyak 146
                 i  +Gg+t  nv+e+  
  KKY24145.1 706 IMLAGGLTPSNVSEVLA 722
                 55556666666655432 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.5e-05       0.1     177     227 ..     453     505 ..     432     507 .. 0.84
   2 ?   -4.0   0.0       3.6   8.1e+03      81      99 ..     535     553 ..     529     560 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.5e-05
                   ---HHHHHHHHHHH..SSEEEEESS--SHHHHHHHHHTTCSEEEESHHHHTTS CS
  His_biosynth 177 Gpdleltkelaeav..kipviasGGvgsledlkelksegvdavivgsalyege 227
                    +dl  t++l ++v  +  v a  G++ ++d+++  ++gv+av+vg+al  ++
    KKY24145.1 453 EVDLGTTSRLMDQVpkETVVCALSGISGPKDVDAYHKDGVRAVLVGEALMRAK 505
                   56777788888888655668999*************************98766 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 3.6
                   SSSSHHHHHHHHHCT-SEE CS
  His_biosynth  81 GIrsledveelleagadkv 99 
                   G r+ e++++++eagad v
    KKY24145.1 535 GTRTPEAATAAIEAGADLV 553
                   7899999999999999976 PP

>> YjeF_N  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.049   1.1e+02      32      84 ..     168     218 ..     155     242 .. 0.75
   2 ?   -2.5   0.0       1.9   4.2e+03      99     121 ..     455     487 ..     424     508 .. 0.62
   3 ?    7.8   0.0    0.0013       2.9     120     149 ..     715     744 ..     698     755 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.049
      YjeF_N  32 lvGsgnnGgdglaaArhLaqegak.Vtvllleeeekldedaeralellkkaggk 84 
                 ++ +g nGg+g++++   +++ ++ V+    ++e+ l+e+ ++++ ++  + g 
  KKY24145.1 168 WIAQGPNGGKGVIMGVRHREHVMEgVQF---HPESILTEEGRKMFTNFLSMTGG 218
                 567899*********9886666665555...89999999999999888776543 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.9
      YjeF_N  99 s..........apvdlviDAllGiglrgelree 121
                             p + v+ Al Gi+  +++++ 
  KKY24145.1 455 DlgttsrlmdqVPKETVVCALSGISGPKDVDAY 487
                 245555666667888888899988776666654 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0013
      YjeF_N 120 eelaeliewlnsseapvlavDiPSGldadt 149
                  ++ e++ +l + ++ v+avD+ SG+++d 
  KKY24145.1 715 SNVSEVLAELGTYRSRVVAVDVSSGVESDG 744
                 368888899999999***********9883 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.51
# Mc/sec: 4523.89
//
Query:       KKY24146.1  [L=352]
Description: putative brct domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-10   40.9   0.1      2e-09   37.7   0.2    2.3  2  BRCT       BRCA1 C Terminus (BRCT) domain
    1.3e-05   25.0   0.6    3.1e-05   23.8   0.6    1.7  1  PTCB-BRCT  twin BRCT domain
    1.4e-05   25.4   0.0    2.7e-05   24.5   0.0    1.4  1  BRCT_2     BRCT domain, a BRCA1 C-terminus domain
     0.0057   16.9   0.3      0.011   16.0   0.3    1.4  1  LIG3_BRCT  DNA ligase 3 BRCT domain


Domain annotation for each model (and alignments):
>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.2   4.4e-13     2e-09      10      79 .]      10      81 ..       4      81 .. 0.81
   2 ?    0.0   0.0      0.26   1.2e+03      22      40 ..     159     177 ..     149     184 .. 0.75

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 4.4e-13
                EEEEEESTSSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSS...HSHHHHHHHHHHTTSEEEETHHHHHHH CS
        BRCT 10 kfvitgvldnftrdeleelikehGGkvttevskktthlvvgep...esrslkylealklnipivheewlldci 79
                + + +++  ++  +++++ ++ hGGkv +++s++tthlv++e       +l  ++++++ + iv+++wl d++
  KKY24146.1 10 VLC-HTGDFGERNEKIRKWVEYHGGKVEHRLSPETTHLVASEKawkKGHDLVRKATKQSSVDIVTFDWLEDSL 81
                333.355566667778***********************999965545555699****************986 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.26
                 HHHHHHHHHHTTCEEESSC CS
        BRCT  22 rdeleelikehGGkvttev 40 
                 ++ l+++i+ h  kv +++
  KKY24146.1 159 TNILNNKIERHHVKVRQCF 177
                 45569********997765 PP

>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.6   6.9e-09   3.1e-05       1      63 []       9      76 ..       9      76 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 6.9e-09
                -EEEEECB-TTCHHHHHHHHHHTT-EEESSEETT-SEEEE....CSS-CHHHHHHHHCT.-EEE-CHH CS
   PTCB-BRCT  1 lvicvtgysgddrkslqklieamGaeyskdltksvTHLic....ksgeGekyekAkkwg.ipvVsveW 63
                +v+c tg  g++ ++++k +e +G+++  +l+ ++THL++    ++   +  +kA+k   + +V+ +W
  KKY24146.1  9 VVLCHTGDFGERNEKIRKWVEYHGGKVEHRLSPETTHLVAsekaWKKGHDLVRKATKQSsVDIVTFDW 76
                5788899999999***************************7666555556688888888899999999 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   6.1e-09   2.7e-05      20      77 ..      20      85 ..      13      94 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 6.1e-09
      BRCT_2 20 sreklkklIeknGGevvetitsavyiviaesneee........laekrkrrvvspkyIkdCikkgk 77
                  ek++k +e +GG+v++  ++++++++a+++  +        ++++ + ++v++++++d+++ ++
  KKY24146.1 20 RNEKIRKWVEYHGGKVEHRLSPETTHLVASEKAWKkghdlvrkATKQSSVDIVTFDWLEDSLHTKS 85
                6789*****************998888887776667*************************98766 PP

>> LIG3_BRCT  DNA ligase 3 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.3   2.4e-06     0.011      18      79 ..      19      84 ..       4      86 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.4e-06
   LIG3_BRCT 18 edykklrRYfiAydGdlvkeekekeaTHvvvskke.....eskkekeksknakaVtaewiwesIkkr 79
                e+++k+r+  + y G  v+   + e TH v+s+k        ++++ k++++  Vt +w+ +s +++
  KKY24146.1 19 ERNEKIRK-WVEYHGGKVEHRLSPETTHLVASEKAwkkghDLVRKATKQSSVDIVTFDWLEDSLHTK 84
                56667755.5667777889999**********98899998888899999**************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2646.16
//
Query:       KKY24147.1  [L=293]
Description: putative u3 small nucleolar ribonucleoprotein imp4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-31  108.2   0.1    6.7e-31  107.9   0.1    1.1  1  Brix      Brix domain


Domain annotation for each model (and alignments):
>> Brix  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.9   0.1   3.8e-35   6.7e-31       1     191 [.      89     260 ..      89     262 .. 0.89

  Alignments for each domain:
  == domain 1  score: 107.9 bits;  conditional E-value: 3.8e-35
                 BTT--HHHHHHHHHHHHHCTTSEEEEEEECT-TTTHHHHHHH...-HHHHHHHH..HCTCSEEEEEE..SSTTEEEEEEEEECECTGGGSTTTS.TS-T CS
        Brix   1 grktssrlrqllkdlrslmkphtasflkrnsnklkdlvelag...vthlellse..kndcslfvfelskkrPngptlefkvenyslmkdlkkak.ktef 93 
                 +r++s rl  + k++r l+ p t  +l r++  l++l++ a+    ++++ll+e   +++ l v++l    P+gpt++f+++n++l+ d+++++ +t +
  KKY24147.1  89 SRDPSTRLAAFSKEIRLLL-P-TSIRLNRGNLILENLLSSAKasaLSDVILLHEhrGTPTALTVSHL----PHGPTASFSLHNVVLRADIPNSSrGTVS 181
                 68899**************.7.4555889999*****99999999*********988899*******....**********************99**** PP

                 T---EEEEES.HHH.....HHHHHHHHHHH..SEEEG..-B-GG-SEEEEEEES.CCTTTECEEEEEEEEEEE..STTTTECT..T..EEEEEEESEEE CS
        Brix  94 gsrPllvfngkenf.....kllksllqdlFrvpkislkspklsglrrvvlftaaenqetdktisfRhYaiklkksgkklpnlekekkerveLeEiGPrf 187
                 +s+P+l+f+   +f     k++ ++l++lF  p+   ++ kl  ++rvv+f+   n e d  i++Rh  ++    +++ +         veL E+GPr+
  KKY24147.1 182 ESYPHLIFE---GFtttlgKRVVQILKHLF--PPRESATAKL--GNRVVTFK---NVE-D-SIEVRHHVFV----KTSYK--------DVELAEVGPRM 256
                 *********...6666668***********..9998888777..********...555.6.8*****9996....34444........9********** PP

                 EEEE CS
        Brix 188 dLkl 191
                 +++ 
  KKY24147.1 257 TMRC 260
                 **96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1883.30
//
Query:       KKY24148.1  [L=1517]
Description: putative atp-dependent helicase nam7 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-72  240.6   2.2    1.2e-71  239.6   1.7    1.8  2  UPF1_Zn_bind     RNA helicase (UPF2 interacting domain)
    4.3e-60  202.7   0.0    7.5e-60  202.0   0.0    1.4  1  AAA_12           AAA domain
    7.8e-54  183.2   2.7    3.7e-31  108.9   0.4    2.5  2  AAA_11           AAA domain
    6.3e-33  112.9   0.0    1.4e-32  111.7   0.0    1.7  1  DUF5599          Domain of unknown function (DUF5599)
    1.2e-13   50.7   0.0    1.3e-12   47.3   0.0    2.4  2  OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin famil
      2e-13   50.5   0.2    2.5e-12   46.9   0.2    2.5  1  AAA_30           AAA domain
    3.3e-11   43.7   0.1    2.2e-10   41.1   0.0    2.4  2  AAA_19           AAA domain
    3.8e-06   27.0   0.1    0.00021   21.3   0.0    3.5  3  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
    8.3e-06   25.9   0.0    2.1e-05   24.6   0.0    1.6  1  ResIII           Type III restriction enzyme, res subunit
    0.00032   20.5   0.1       0.88    9.3   0.0    2.9  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    0.00081   18.7   0.2      0.027   13.7   0.0    2.8  3  DUF2075          Uncharacterized conserved protein (DUF2075)
     0.0012   18.7   0.0     0.0026   17.7   0.0    1.5  1  Helicase_RecD    Helicase
     0.0046   16.2   0.1       0.81    8.8   0.0    2.4  2  PIF1             PIF1-like helicase
     0.0081   15.7   0.0      0.049   13.1   0.0    2.1  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.029   14.1   0.0    1.6  1  DEAD             DEAD/DEAH box helicase
      0.035   13.5   0.1       0.21   10.9   0.0    2.3  3  ATPase           KaiC
      0.047   12.6   0.0      0.072   12.0   0.0    1.2  1  AAA_10           AAA-like domain
       0.12   12.6   0.3        0.6   10.4   0.0    2.3  2  AAA_22           AAA domain
       0.17   11.9   0.0        1.5    8.8   0.0    2.3  2  AAA_5            AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> UPF1_Zn_bind  RNA helicase (UPF2 interacting domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.6   1.7   1.3e-74   1.2e-71       1     152 []      85     236 ..      85     236 .. 1.00
   2 ?   -2.7   0.0       5.4   5.1e+03      29      51 ..     466     489 ..     464     500 .. 0.72

  Alignments for each domain:
  == domain 1  score: 239.6 bits;  conditional E-value: 1.3e-74
  UPF1_Zn_bind   1 haCaYCgisdpesvvkCaackkwFCngkgktsashivthlvrskhkevslhkesplgdtvleCyncgsknvflLgfipaksesvvvllcrepcasak 97 
                   haCaYCgi++p svvkC ac+kwFC ++g+ts+shiv+hlvr++hkev+lh++s+lg+tvleCyncg+knvflLgfipaks++vvvllcr+pca+  
    KKY24148.1  85 HACAYCGIHNPGSVVKCLACSKWFCSARGNTSSSHIVNHLVRARHKEVQLHPSSSLGETVLECYNCGTKNVFLLGFIPAKSDTVVVLLCRQPCAAMP 181
                   9************************************************************************************************ PP

  UPF1_Zn_bind  98 slkdlnwdlsewqpliedrqllswlvkvpseeeqlrarkisakqiekleelwkkn 152
                   s+kd+nwd+s+wqpliedr++lswlv  ps++eqlrar++s + i+klee+wk+n
    KKY24148.1 182 SSKDMNWDTSRWQPLIEDRSFLSWLVAAPSDQEQLRARHLSPQMIAKLEEMWKDN 236
                   *****************************************************87 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.4
  UPF1_Zn_bind  29 gkt.sashivthlvrskhkevslh 51 
                   gkt +++ i++hl + +  +v + 
    KKY24148.1 466 GKTvTSATIIYHLAKINGGQVLVC 489
                   55558889*****99888777665 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.0   0.0     8e-63   7.5e-60       1     198 [.     649     845 ..     649     846 .. 0.92

  Alignments for each domain:
  == domain 1  score: 202.0 bits;  conditional E-value: 8e-63
      AAA_12   1 lerSlferllkkekekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkrele.aqealeepleplvfidvekseeekekkeksyiNeeEaelvvkl 98 
                 l++Slferl+  + ++++ L++qYRmhp +s+fps++fY+g+L+++ ++++r  + ++  ++   +p++f++  ++ee + +  +sy N++Ea+ v k+
  KKY24148.1 649 LNQSLFERLVILG-HAPIRLNVQYRMHPCLSEFPSNMFYEGSLQNGVTMQQRLRKdVDFPWPVSDSPMMFWSNLGNEEISASG-TSYLNRTEAANVEKI 745
                 589**********.************************************998885677788888999999988888888765.*************** PP

      AAA_12  99 vekllkkgseeerkkigvitpYraqvellkkklke..keeeksekeievntvdgfQGrekdviilslVRsnekkeigflkderrlNValTRAkskliiv 195
                 v++++k+g++   ++ig+itpY+ q +++ + +++  +++++ +keiev++vd+fQGrekd+i+ls+VRsn+++ igfl+d rrlNVa+TRAk+ l+i+
  KKY24148.1 746 VTRFFKAGVQP--QDIGIITPYEGQRSYVVSSMQAtgTFKKELYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLNVAMTRAKYGLVIL 842
                 **********9..****************99988622456666778***************************************************** PP

      AAA_12 196 Gnk 198
                 Gn+
  KKY24148.1 843 GNP 845
                 *97 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.3   8.3e-24   7.8e-21       2     119 ..     440     540 ..     439     548 .. 0.92
   2 !  108.9   0.4   3.9e-34   3.7e-31     157     261 .]     540     642 ..     533     642 .. 0.94

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 8.3e-24
      AAA_11   2 lndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgnee.er 99 
                 ln sq +a+ks+l+++  +liqGPPGtgKT t + ++ +l        +k ++ ++LvCapSN+AvD+l+er+ r         +++k+vRv +++ e+
  KKY24148.1 440 LNGSQINAVKSVLQKPL-SLIQGPPGTGKTVTSATIIYHL--------AKINGGQVLVCAPSNVAVDQLCERIHR---------TGLKTVRVTAKSrED 520
                 89**************6.**********************........689************************.........************999 PP

      AAA_11 100 iseavksvsleekvekrlek 119
                 +++ v  +sl e+v+ + ++
  KKY24148.1 521 VDSPVGFLSLHEQVRMNDSN 540
                 99999999999999877655 PP

  == domain 2  score: 108.9 bits;  conditional E-value: 3.9e-34
      AAA_11 157 ekskskleqerrklkkerkelskeleeaeesleeevldeaeivltTlsgagsklleklakkfdvviIDEAaqavEpstliPlrlgakkvvLvGDpkQLp 255
                 + +  kl+q +++l + +++ +k++++ ++++e+e+l++a+++++T++gag ++l kl  kf++v+IDE +q+ Ep+++iPl lg+k+vvLvGD++QL 
  KKY24148.1 540 NIELVKLNQLKTELGELSSQDEKKFKQLTRAAEREILNNADVICCTCVGAGDPRLAKL--KFRTVLIDESTQSAEPECMIPLVLGCKQVVLVGDHQQLG 636
                 5566789999999*********************************************..9************************************** PP

      AAA_11 256 atvisk 261
                 +++++k
  KKY24148.1 637 PVIMNK 642
                 **9975 PP

>> DUF5599  Domain of unknown function (DUF5599)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   0.0   1.5e-35   1.4e-32       1      93 []     289     383 ..     289     383 .. 0.98

  Alignments for each domain:
  == domain 1  score: 111.7 bits;  conditional E-value: 1.5e-35
     DUF5599   1 qtqddisvrWdvglnkkrlasFvlpkldsgelrlvvGDelrlkykgseaeeWegeghvvkltdssseevtleLrss..skkaPtevttgFtvefV 93 
                 q+qd++ vrWd+gln+k+lasF+lpkl+ g+++l+vGDe+rlky+g+ + +Weg+g+v+k+++++s+evt+eLr++  +k++Pte+t++Ft+++V
  KKY24148.1 289 QSQDGLIVRWDLGLNNKHLASFILPKLELGDVKLAVGDEMRLKYTGELRPHWEGVGYVIKIPNNQSDEVTIELRTKgdHKSVPTECTHNFTADYV 383
                 89************************************************************************9988889************98 PP

>> OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.51   4.8e+02      25      72 ..    1097    1147 ..    1079    1165 .. 0.66
   2 !   47.3   0.0   1.4e-15   1.3e-12      97     281 ..    1239    1441 ..    1226    1450 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.51
                       HHHHHHHHCC.......-CE----EEEEECCGTEEEE.EEEEEETTTTEEEEEEEE CS
  OCD_Mu_crystall   25 eeafrrlasg.......kvkkpprvalevkdsrgele.vmpaylagrellgvKlvn 72  
                        ea+ +++ g        +++p r++l  k+ +g+    mpa+++   ++gvK+v 
       KKY24148.1 1097 AEALHEYSTGnqdtgccSANQPLRTVL--KK-NGVTTlFMPASSGS--STGVKIVA 1147
                       556666666655555444444444444..44.4554416*******..******97 PP

  == domain 2  score: 47.3 bits;  conditional E-value: 1.4e-15
                       --EEEEEE-HHHHHHHHHHHHHHHHHHHS-TT--EEEEE--SHHHHHHHHHHCCCS-..-SEEEEE-SSHHHHHHHHHH.........CCS. CS
  OCD_Mu_crystall   97 GvplalmdatlltalRTaAvsavaakyLarkdasvlaiiGaGvqaetqlealkavld..ikevriydrdeeaaekfaen.........lqef 177 
                       G+p+a+++a  lta RTa ++ +  +  +r+  ++++++GaG qa+ +++    +++  i++v i +r+ e    ++++         ++++
       KKY24148.1 1239 GYPKAIINAEELTAFRTALAATLLMQ--KRHTVHTITVFGAGKQAYWHIRLALLLRGdeIHHVHIVNRNFERPTTLLKEflqledtdmMSKA 1328
                       9****************866665544..56778899**********9998777777668********9866655544431111111113345 PP

                       CTT-EEECSC......HHHHTTSSEEEE----SS-SB-GGGS-......TT-EEEE-S--STT--SB-HHHHHCCEEEESHHHHHHHCCCCH CS
  OCD_Mu_crystall  178 efevsackse......eeavegadivvtvTaakapilkaewvk......pGahinavgadapgkteLdddilkradifvdseaqareeGeiq 257 
                       +f +  ++ +      ++ v +ad++  +T++++p++ ae++        G ++ a+g+   +  eL++dilk+a   + +    ++  e  
       KKY24148.1 1329 KFTILTADFKeygrvlKDNVRKADVIFCCTPSTEPLFPAEFLTshegrrKGRYVSAIGSYKGHMLELHPDILKQAVAPGHQHHHHKHATEGG 1420
                       6777776544222223699**********************9633333379**************************998887777665555 PP

                       CHHHTTSSTCGGEEEEHHHHHCTS CS
  OCD_Mu_crystall  258 vaiekgvlaedakvaelgeviaGk 281 
                       v     v + +a  +e gevi+ k
       KKY24148.1 1421 V---IVVDSLEACLKEAGEVIQAK 1441
                       5...22455567778888888766 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.2   2.7e-15   2.5e-12       1     131 [.     439     638 ..     439     648 .. 0.82

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 2.7e-15
      AAA_30   1 elnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaa.ggrviglAptgkaAkvLaeelgieastiakllkrlk................. 81 
                 eln +Q +av+++l+++  +++++Gp+GtGKt + +++  ++++  gg+v+++Ap++ a ++L e +  ++  + +++ + +                 
  KKY24148.1 439 ELNGSQINAVKSVLQKP--LSLIQGPPGTGKTVTSATIIYHLAKInGGQVLVCAPSNVAVDQLCERIHRTGLKTVRVTAKSRedvdspvgflslheqvr 535
                 5899*************..9***************99977777766******************86665444444444444445578888888888999 PP

      AAA_30  82 ........................................................grarlepg.tllivDEagmvdtkq.laallkaaekagakvilv 122
                                                                              + + + +++DE+   +  + +  l+  ++    +v+lv
  KKY24148.1 536 mndsnielvklnqlktelgelssqdekkfkqltraaereilnnadvicctcvgagdP-RLAKLKfRTVLIDESTQSAEPEcMIPLVLGCK----QVVLV 629
                 99999999999999999999**********************************862.333445689999**998766551444544444....6**** PP

      AAA_30 123 GDerQlasV 131
                 GD++Ql++V
  KKY24148.1 630 GDHQQLGPV 638
                 *******99 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   2.3e-13   2.2e-10       1     143 [.     444     637 ..     444     639 .. 0.73
   2 ?   -1.8   0.0       3.8   3.5e+03      71     126 ..    1268    1442 ..    1250    1452 .. 0.42

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 2.3e-13
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal..................... 77 
                 q +av+  l++++ l+ ++pGtGKT +  +i+ +l +++g    ++l++a+ + A+++l er++  g+  +T+   a                      
  KKY24148.1 444 QINAVKsVLQKPLSLIQGPPGTGKTVTSATIIYHLAKINGG---QVLVCAPSNVAVDQLCERIHRTGL--KTVRVTAKsredvdspvgflslheqvrmn 537
                 67899889999****************************76...9******************65555..55555544567788888888888888889 PP

      AAA_19  78 .................................ldfddlltealelle.................eaeeekklqeee.llivDEfqdvd..elqyrLlk 123
                                                                e                    +  kl  ++ ++++DE+ +    e +  L+ 
  KKY24148.1 538 dsnielvklnqlktelgelssqdekkfkqltraA-------------EreilnnadvicctcvgaGDPRLAKL--KFrTVLIDESTQSAepECMIPLVL 621
                 9999998888888888887777775544444330.............03333466666677765522334445..445******876653555555554 PP

      AAA_19 124 allgekkklllvGDpdQliy 143
                  ++    +++lvGD++Ql +
  KKY24148.1 622 GCK----QVVLVGDHQQLGP 637
                 444....6*********865 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.8
      AAA_19   71 TiHrlal.......................................................................................... 77  
                  T+H +++                                                                                          
  KKY24148.1 1268 TVHTITVfgagkqaywhirlalllrgdeihhvhivnrnferpttllkeflqledtdmmskakftiltadfkeygrvlkdnvrkadvifcctpstepl 1364
                  4444433444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 PP

      AAA_19   78 ............................ldfddlltealelle.......eaeeekklqeeellivDEfqdvdelqyrLlkall 126 
                                              l++++++       +       +++++k+ +e+ +++vD      + + ++++a l
  KKY24148.1 1365 fpaefltshegrrkgryvsaigsykghmLELHPDIL------KqavapghQHHHHKHATEGGVIVVDSLEACLKEAGEVIQAKL 1442
                  444444444444444444443333333322222221......122222334444444434446666666655555555555555 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       7.4     7e+03      23      60 ..     470     507 ..     464     515 .. 0.77
   2 ?   -1.7   0.0       2.9   2.8e+03      63      96 ..     564     600 ..     538     610 .. 0.65
   3 !   21.3   0.0   2.3e-07   0.00021      10     103 ..    1267    1378 ..    1257    1385 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 7.4
                   HHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET CS
  Shikimate_DH  23 maelvakhLlakgvkkvvvaNRtlerakelaeelkgee 60 
                   ++  ++ hL++ +  +v+v   +   +++l+e+++ + 
    KKY24148.1 470 TSATIIYHLAKINGGQVLVCAPSNVAVDQLCERIHRTG 507
                   46788999999999999999999999999999987664 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.9
                   EEEGCGH..HHHHHT-SEEE.E-SSSSS-SB-HHHHH CS
  Shikimate_DH  63 alkleel..kellaeadvvi.sataseepilekeeve 96 
                   +++l+    +e+l++adv+  +++++ +p l k +++
    KKY24148.1 564 FKQLTRAaeREILNNADVICcTCVGAGDPRLAKLKFR 600
                   3444433115789999998625777777777776665 PP

  == domain 3  score: 21.3 bits;  conditional E-value: 2.3e-07
                    .TT-EEEEES-SHHHH...HHHHHHHCCT-CEEEEEESSHHHHHHHHHHH...T.ET........-EEEEGCG....HHHHHHT-SEEEE-SSSS CS
  Shikimate_DH   10 lkekkvlliGaGemae...lvakhLlakgvkkvvvaNRtlerakelaeel...kgee........iealklee....lkellaeadvvisatase 86  
                    ++ +++++ GaG+ a    ++a  L   ++++v ++NR++er  +l +e+   ++++        i + +++e    lk+ +++adv++++t s+
    KKY24148.1 1267 HTVHTITVFGAGKQAYwhiRLALLLRGDEIHHVHIVNRNFERPTTLLKEFlqlEDTDmmskakftILTADFKEygrvLKDNVRKADVIFCCTPST 1361
                    5668999******997222445568888*******************9984221111111111112233445533335667889*********** PP

                    S-SB-HHHHHCCHHH.S CS
  Shikimate_DH   87 epilekeeveealkkrk 103 
                    ep++ +e +++   +rk
    KKY24148.1 1362 EPLFPAEFLTSHEGRRK 1378
                    ****9998887776665 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   2.2e-08   2.1e-05       7     118 ..     443     553 ..     438     612 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.2e-08
                 HHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--......... CS
      ResIII   7 yQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka.......ke 98 
                  Q++a++++l      ++   li+ + GtGKT+++a +i++l+k ++  ++l+ +p++  ++q+ e++ ++  +++  ++ k ++d +++       ++
  KKY24148.1 443 SQINAVKSVL------QKPLSLIQGPPGTGKTVTSATIIYHLAKING-GQVLVCAPSNVAVDQLCERIHRTGLKTVR-VTAKSREDVDSPvgflslhEQ 533
                 5666666665......345679**********************866.5*******************888888875.444444444444666666655 PP

                 .....-SEEEEEHHHHHHTH CS
      ResIII  99 kdstnkkilvttiqsldads 118
                  + ++++i +++ ++l+ ++
  KKY24148.1 534 VRMNDSNIELVKLNQLKTEL 553
                 56666666666666666666 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       2.9   2.8e+03       2      13 ..     458     469 ..     457     512 .. 0.77
   2 !    9.3   0.0   0.00094      0.88      57     118 ..     593     653 ..     549     696 .. 0.76
   3 !    7.9   0.0    0.0024       2.3     159     233 ..     764     842 ..     723     843 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.9
  Viral_helicase1   2 vvhGvpGcGKSt 13 
                      +++G pG GK+ 
       KKY24148.1 458 LIQGPPGTGKTV 469
                      79999*****94 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00094
  Viral_helicase1  57 lvkstkgkililDEylll..haGyilllaalskaklvilfGDplQipfhsrnasfllahlpssl 118
                      ++++ k++++++DE ++   + ++i l     ++k+v+l+GD++Q +    n+++  a l+ sl
       KKY24148.1 593 RLAKLKFRTVLIDESTQSaePECMIPL---VLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSL 653
                      55556799*******997224566655...79*************8876666655555555555 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0024
  Viral_helicase1 159 epkgqe.kvlvyltftqalkealgvr.evttvhevqGltfd..kVtlvllketdlelisesrenllvAlTRhrkslvil 233
                        +gq   v+   ++t   k++l  + ev  v   qG + d  + ++v++++ +   + +++  l vA+TR++ +lvil
       KKY24148.1 764 PYEGQRsYVVSSMQATGTFKKELYKEiEVASVDAFQGREKDfiVLSCVRSNDHQGIGFLSDPRRLNVAMTRAKYGLVIL 842
                      4444423555555666666666666688999******997722445566655554445589***************997 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.9e-05     0.027       3      56 ..     456     510 ..     454     584 .. 0.79
   2 ?   -1.2   0.0      0.98   9.3e+02     127     171 ..     626     674 ..     600     722 .. 0.65
   3 ?    1.2   0.1      0.19   1.7e+02     345     359 ..     827     841 ..     825     844 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.9e-05
     DUF2075   3 vvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakke..e 56 
                 + l++G +GtGKtv   ++++ l  + ++ ++ +   ++  v+ l e++ ++   +
  KKY24148.1 456 LSLIQGPPGTGKTVTSATIIYHL-AKINGGQVLVCAPSNVAVDQLCERIHRTGlkT 510
                 569********************.77777777777788888888888888877543 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.98
     DUF2075 127 valvDegQelntgeigteee....lkklakkleveleekvhLksqfRva 171
                 v+lv+++Q+l    + +++      ++l+++l +  +  ++L++q+R++
  KKY24148.1 626 VVLVGDHQQLGPVIMNKKAAkaglNQSLFERLVILGHAPIRLNVQYRMH 674
                 5666666665544433333344447778888888888888*******94 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.19
     DUF2075 345 ayrVLLtRGrkGlyi 359
                 +++V +tR+ +Gl+i
  KKY24148.1 827 RLNVAMTRAKYGLVI 841
                 79************9 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.7e-06    0.0026       2      59 ..     459     517 ..     458     561 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.7e-06
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflak.glealglkeee 59 
                    +++ +G+GK+ + + ++ +l++ +  ++lv+aps+ +v++l e++++ gl++++++ ++
     KKY24148.1 459 IQGPPGTGKTVTSATIIYHLAKINGGQVLVCAPSNVAVDQLCERIHRtGLKTVRVTAKS 517
                    7899***************************************9965267777766632 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.014        13      24      66 ..     456     499 ..     440     519 .. 0.80
   2 !    8.8   0.0   0.00085      0.81     135     162 ..     617     644 ..     544     662 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.014
                 -EEEEESTTSSCHHHHHHHHHHCHC.TCCCEEEEESSHHHHHCC CS
        PIF1  24 lfFvtGsgGtgKtflwkallkklrs.egkivlavAssGvAalll 66 
                 l  ++G  GtgKt    +++  l + +g +vl+ A s vA  +l
  KKY24148.1 456 LSLIQGPPGTGKTVTSATIIYHLAKiNGGQVLVCAPSNVAVDQL 499
                 44679************999988776999********9997665 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00085
                 .-SCCCC-EEEEE--TTS-----SSSSS CS
        PIF1 135 idkpFGGktvvlgGDfrQilPviekgsr 162
                 i    G k+vvl GD +Q+ Pvi + + 
  KKY24148.1 617 IPLVLGCKQVVLVGDHQQLGPVIMNKKA 644
                 555689*****************65433 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   5.2e-05     0.049       1      68 [.     440     527 ..     440     580 .. 0.71
   2 ?   -0.8   0.0      0.94   8.9e+02     256     294 ..     598     634 ..     592     635 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.2e-05
                    SSHHHHHHHHS.-SSEE.EEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH.....................H CS
  UvrD-helicase   1 lnpeqreaias.lggpi.lveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRiee.....................a 68 
                    ln +q +a++s l++p+ l+   +G+GKT + a  i++++++  i+  ++lv    n A + l eRi++                      
     KKY24148.1 440 LNGSQINAVKSvLQKPLsLIQGPPGTGKTVTSA-TIIYHLAK--INGGQVLVCAPSNVAVDQLCERIHRtglktvrvtaksredvdspvgF 527
                    57789999*998777753788889*****8865.56666654..6899********************97666665544444444444441 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.94
                    HSSEEEESSGGG-BHHHHHHHHHHHTTTTTEEEEE-GGG CS
  UvrD-helicase 256 rykeiliDEyQDTnkiQyrilkllasgheelfmvGDpkQ 294
                    +++++liDE   T+++  + +  l+ g +++++vGD  Q
     KKY24148.1 598 KFRTVLIDE--STQSAEPECMIPLVLGCKQVVLVGDHQQ 634
                    899******..5777777777777777779******999 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.1e-05     0.029       4      72 ..     444     508 ..     441     535 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.1e-05
                 HHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   4 QaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkk 72 
                 Q +a++ +l++   l++++ G+GKT   +  ++ +++   + +g ++l+ +P+   + q ++++ + + 
  KKY24148.1 444 QINAVKSVLQKPLSLIQGPPGTGKTVT-SATIIYHLA---KINGGQVLVCAPSNVAVDQLCERIHRTGL 508
                 78899999999999***********88.666666774...69999***************999987665 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00023      0.21      20      73 ..     455     509 ..     434     527 .. 0.80
   2 ?   -2.4   0.0       2.6   2.5e+03      38      94 ..     748     803 ..     745     807 .. 0.83
   3 ?   -2.3   0.0       2.3   2.2e+03     147     164 ..    1119    1136 ..    1117    1148 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00023
      ATPase  20 rvvlitGepGtGKtifalqFlikgaekygepgvfvtveepa.edlrenakslGwd 73 
                    li G pGtGKt+ +++ +++ a+  g +++  +    a  +l e++++ G  
  KKY24148.1 455 PLSLIQGPPGTGKTVTSATIIYHLAKINGGQVLVCAPSNVAvDQLCERIHRTGLK 509
                 5679*******************99998888777665555456777777777765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.6
      ATPase  38 qFlikgaekygepgvfvtveepaedlrenakslGwdlekleeegklaiidasesaee 94 
                 +F   g++  ++ g++   e + + +  ++++ G   ++l +e ++a +da++ +e+
  KKY24148.1 748 RFFKAGVQP-QDIGIITPYEGQRSYVVSSMQATGTFKKELYKEIEVASVDAFQGREK 803
                 566777666.7778888888889999999******9***************999876 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.3
      ATPase  147 lvrvlkklgvTailvsek 164 
                  l +vlkk+gvT+++    
  KKY24148.1 1119 LRTVLKKNGVTTLFMPAS 1136
                  66899*********8764 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.6e-05     0.072      20      97 ..     453     529 ..     438     587 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.6e-05
      AAA_10  20 nasasliiGdlGnGKSvlakllvlyis.llggkaliiDpkke.rekfketlpeiakkinvvtLdseeenegvLdPlvllk 97 
                 + + sli G++G GK v++ ++++ ++ + gg++l+  p +    +  e++      ++ v+++ ++++  v  P+ +l+
  KKY24148.1 453 QKPLSLIQGPPGTGKTVTSATIIYHLAkINGGQVLVCAPSNVaVDQLCERIHR--TGLKTVRVTAKSRE-DVDSPVGFLS 529
                 456689*************9999876517789999999999845556777766..34555555544333.2334544444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00064       0.6       7      61 ..     456     504 ..     452     519 .. 0.85
   2 ?   -2.5   0.0       6.1   5.7e+03      83     114 ..    1280    1318 ..    1248    1333 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00064
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrell 61 
                 + ++ G++GtGKT++ +++ + l +       + ++v+v++ps    ++l++++ 
  KKY24148.1 456 LSLIQGPPGTGKTVTSATIIYHLAKI------NGGQVLVCAPSNVAVDQLCERIH 504
                 56899***************999443......88999999999988888888875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.1
      AAA_22   83 eqalraravielliiDEaqhlr...s.....eealeeLrs 114 
                  + +++ r +  ll  DE++h+    +      ++l+e+ +
  KKY24148.1 1280 QAYWHIRLA-LLLRGDEIHHVHivnRnferpTTLLKEFLQ 1318
                  334444444.566668888874443134344555555544 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0016       1.5       3      54 ..     458     512 ..     457     525 .. 0.84
   2 ?   -0.5   0.0       1.2   1.1e+03      55     107 ..    1396    1458 ..    1385    1486 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0016
                 EEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--....... CS
       AAA_5   3 lLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreikngttsl 54 
                 l++GppGtgK+  +  +   l   n   + v  +++   ++l  r++ ++ +t++
  KKY24148.1 458 LIQGPPGTGKTVTSATIIYHLakiNGGQVLVCAPSNVAVDQLCERIHRTGLKTVR 512
                 799**********999999998999999999999999999999998866555555 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.2
                  ..--------............G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE--- CS
       AAA_5   55 vdsplvraar............egeilvlDEveraesevlnsLlslleerrllleeggelvkakn 107 
                  ++ +l++a+             eg ++v+D +e + +e+ ++ +  l  r l   e gel+ +k+
  KKY24148.1 1396 HPDILKQAVApghqhhhhkhatEGGVIVVDSLEACLKEAGEVIQAKLGPRDLV--EVGELIMVKR 1458
                  5555555555555666666666***********99999988888877777777..7777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      596  (0.0332422); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 1.18u 0.36s 00:00:01.54 Elapsed: 00:00:00.58
# Mc/sec: 7830.37
//
Query:       KKY24149.1  [L=534]
Description: putative glycosyl transferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-40  137.5   0.0    4.4e-39  134.5   0.0    2.0  1  Mannosyl_trans3  Mannosyltransferase putative
  ------ inclusion threshold ------
      0.033   14.2   0.5      0.072   13.1   0.4    1.5  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> Mannosyl_trans3  Mannosyltransferase putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.5   0.0   4.9e-43   4.4e-39       2     275 .]     166     417 ..     165     417 .. 0.87

  Alignments for each domain:
  == domain 1  score: 134.5 bits;  conditional E-value: 4.9e-43
  Mannosyl_trans3   2 kGIVisgggkesllalrlIkvLra.lgnkLPIeivikk.eelekefcekilpaaeepkqevwfvnakcvlnedylgkefkgfqnKalAllfssF 93 
                       GIVi +g+ + l+a++lI +Lr+ lg+k PIe+ + + e+l  + ++ + +      +++  vn+    +e  +g +  ++++K +A+l+ss+
       KKY24149.1 166 TGIVICVGKSNFLFATQLILTLRNvLGSKAPIELAYAGeEDLPVQYRSSLRN----LGPNIELVNVLDSFDEARVGLADGKYAIKPFAVLASSY 255
                      6**********************8679********************99999....999******************7779************* PP

  Mannosyl_trans3  94 eevllLDaDnvplknpdklFe.seeYkktglllwkdrdlwkrstspkfyeiaenklepskeeskyfgkkerekeseevplhdlfgtipdhsses 186
                       +v+lLDaD+v+l+npd++++  ++Y +tgll++ dr + + +t++  +                f++      s+  +   ++++ + + +es
       KKY24149.1 256 PHVILLDADTVLLQNPDDMLTrFPSYDSTGLLFFHDRAYKTDNTRRDWISSKL-----------HFRNL-----SKTLTEGLFWREDLWQEMES 333
                      ******************7652699**************88887666654433...........12211.....2234556688888888**** PP

  Mannosyl_trans3 187 GlvvinKkk..hlktLllalylnlygpk...ykllsqgaagegdKEtfwlaahvlgekYyfvkekaaaiGeltkkekkkseskeicsaqlghld 275
                      G+v i+K++   + t+l a+ +n  + +   +++ ++g     dKEt+wlaa+++ ++Y fvke+a++iG+ +       ++ +ics++++h+d
       KKY24149.1 334 GVVGIDKTRpeAFMTVLFAAWMNTKDVRekeTYEHVLG-----DKETWWLAAEFARLDYGFVKEYAGIIGTSEMG-----KKTKICSTHILHMD 417
                      ******986448***********986555556666666.....******************************95.....678*********98 PP

>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4     8e-06     0.072      68     116 ..     257     308 ..     250     332 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8e-06
  Nucleotid_trans  68 nvllsDvDvvWlrnpfpll....kyedaDvlvssDsldgttadelknliNsGf 116
                      +v+l+D+D+v l+np ++l     y +  +l+  D+   +t++ ++++i s++
       KKY24149.1 257 HVILLDADTVLLQNPDDMLtrfpSYDSTGLLFFHDRAY-KTDNTRRDWISSKL 308
                      69*****************8665556777888888776.44888888885544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3737.49
//
Query:       KKY24150.1  [L=525]
Description: hypothetical protein UCRPC4_g02616 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.1e-46  155.6   0.0    8.2e-46  154.9   0.0    1.3  1  Ysc84        Las17-binding protein actin regulator


Domain annotation for each model (and alignments):
>> Ysc84  Las17-binding protein actin regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.9   0.0   4.5e-50   8.2e-46       1     128 []     203     329 ..     203     329 .. 0.95

  Alignments for each domain:
  == domain 1  score: 154.9 bits;  conditional E-value: 4.5e-50
       Ysc84   1 hgvgaGfqiGvdiydcvlvlntkealeaftkktrvslGgdlsvaaGpvgaggeaeaaaaaklkapvysysksrGlyaGvsldgtviterkdaNaafYge 99 
                 h++g+Gf +Gvdiydcv+v+nt +aleaft k r++lGg++s++aGpvg gg +e+++++ ++apv++y ksrG+yaGv++dgt+++er+d+N++fYge
  KKY24150.1 203 HTAGLGFLVGVDIYDCVVVINTYKALEAFT-KIRCTLGGEVSAVAGPVGIGGLLETEVHK-RQAPVWTYLKSRGFYAGVQVDGTIVIERSDENERFYGE 299
                 789***************************.89**********************99998.*************************************8 PP

       Ysc84 100 kgvsveqIL..rgevpwpaaakeLlevlkaa 128
                 + +sv++IL  + + p++++ k L+++++aa
  KKY24150.1 300 R-ISVADILarNARYPPKEKYKVLMDTIRAA 329
                 8.*******65555567799*******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       844  (0.0470746); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.51
# Mc/sec: 3094.73
//
Query:       KKY24151.1  [L=453]
Description: putative phosphotransferase enzyme family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-09   36.0   0.0    2.7e-08   34.0   0.0    1.8  1  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   1.5e-12   2.7e-08      34     229 ..      80     337 ..      72     352 .. 0.67

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.5e-12
                 HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS.................HHHHHHHHHHHHHHHHHHC........... CS
         APH  34 aeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr.................klsaaqlpellealgefla........... 103
                 +e++ +e+a++++++++   p+P+v+    ++ +   ++ ++e+v+g+ ll+                 + s +++ + ++ ++  l            
  KKY24151.1  80 YEKTNDEAAIMAYISQHTTiPTPKVIRVTASAMG---PYIVMEFVEGTLLLThleapsldrtappvlnpNISIPVITKSYRHMAHILIelskcrftqig 175
                 68899**********99888*******5444444...56677777777777733333333366666555555556666666666666666666666666 PP

                 .........................CHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC.HHHHHHHH.......HHHHHHHH--SSS-EEEE CS
         APH 104 .........................alhqvdpaalpladflaqdlellrqlesatarllaselld.lleeleeq.......vlaalaallpgelptvll 169
                                           + +++p+alp ++f+  +   +  l++ +    +++++  +++e           ++++l ++ +++++t+  
  KKY24151.1 176 gvirdeskhwrvgkrpmtinmnhlvSFANFPPTALPEQSFTTANE-YFSALAEIH--MTHLRTQRnDAAED--DkdyqkkyIARCLFRRIARSFSTTYN 269
                 666666666666666666666666666666999999999996644.444444442..23322332112222..23466777888888888886666666 PP

                 -S.......S-SGGGEEEC..TTEEEEE---TT-EEEECCHHH...HCCHHHCSCHCCCHCHHHHHHHHC CS
         APH 170 Hg.......DlhpgNllvdpddgrvtGviDfedaglgpplyDl...avllrswtseldpeflaallraye 229
                 Hg       Dl pgNl+vd dd  v+  iD+e++ ++p+       ++ll s + + ++e l  +l++y 
  KKY24151.1 270 HGpfplycdDLGPGNLIVD-DDLDVKSTIDWEYCYAAPAELTYcspWWLLLS-RPTIWEEELSSFLEQYI 337
                 6666666658*********.8899999**********986555666888845.88999999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.52
# Mc/sec: 2634.09
//
Query:       KKY24156.1  [L=83]
Description: putative 2fe-2s iron-sulfur cluster binding domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-08   32.7   1.0    6.2e-08   32.5   1.0    1.1  1  Fer2      2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   1.0   3.5e-12   6.2e-08      33      78 .]       3      57 ..       1      57 [. 0.80

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 3.5e-12
                TSSSSSS.SSTTEEEEEESCECTT...SSSSTHHHHHTTEE.....EEGGGSEES CS
        Fer2 33 ysCgggg.CgtClvevlegevqsd...etelegeeldegkl.....rlaCqtivt 78
                 +Cgg++ C+tC+v +++ +  ++   ++++e+++ld ++      rl Cq+++t
  KKY24156.1  3 GACGGSCaCSTCHVIIEDPDMYDKmeePEDDENDMLDLAFGltetsRLGCQVKMT 57
                58*****************9944435566666666666655***********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 620.95
//
Query:       KKY24157.1  [L=269]
Description: putative rrna processing protein rrp15 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-38  130.0  10.0    7.1e-38  130.0  10.0    2.2  2  Rrp15p    Rrp15p
  ------ inclusion threshold ------
        8.4    4.9   8.9         11    4.6   8.9    1.1  1  Ndc1_Nup  Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> Rrp15p  Rrp15p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   1.7     0.076   6.8e+02      22      53 ..      62      78 ..       8     114 .. 0.58
   2 !  130.0  10.0     8e-42   7.1e-38       1     133 [.     120     258 ..     120     259 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.076
      Rrp15p 22 iLskakkaekkakkiedekleakakkqlrkek 53
                +  ka+               + a  +  ++ 
  KKY24157.1 62 VTKKAE---------------STATDNSSSAE 78
                222211...............11111111111 PP

  == domain 2  score: 130.0 bits;  conditional E-value: 8e-42
      Rrp15p   1 fadamskilssklsekkkkkpiLskakkaekkakkiedekleakakkqlrkekkekeekgrvkdviggwt......lekErrlrkvAtrGVVkLFNAvr 93 
                 f++++skil++kls++++++p+Ls++k+a ++++ ++deklea+ak + r+ekke+ ++grv+dv+g ++      +e+E+rlrk+A++GV+kLFNAvr
  KKY24157.1 120 FSTSISKILNTKLSQSARQDPLLSRSKEAVQTSQGVADEKLEARAKAKIRAEKKEALDRGRVRDVLGLSSgeagetAEEEKRLRKIAQKGVIKLFNAVR 218
                 6899***************************************************************77799***9*********************** PP

      Rrp15p  94 aaQkkvekelaeaeelek.lgekkkekvlkelsKekFLdll 133
                 aaQ+k e++++e++++ + +g +++e+ ++e+sK++FLdl+
  KKY24157.1 219 AAQVKGEEAAREQRRK-GtVGLDNREETVNEMSKKGFLDLI 258
                 ************8665.55*********************9 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   8.9    0.0012        11     358     467 ..      63     197 ..      49     234 .. 0.52

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0012
    Ndc1_Nup 358 pkaapskapknkasapvkelprlsksplkkk..ddeifgnsltaeaspkssssskegvekalsslakspgqs...psptarls......prarklleka 445
                  k+a+s+a+ n++sa+++++ +  +++++++  dd+++  + ++++ p ++++ ++++++++s+  ++  ++   +      +      ++a ++ +  
  KKY24157.1  63 TKKAESTATDNSSSAEENSEEEGEAESSQDEldDDDLYSLAESSRSRPVNKRNDPNAFSTSISKILNTKLSQsarQ------DpllsrsKEAVQTSQGV 155
                 2222233344444444444444444444444555666664566667777777888888888888887776543332......23331224444444444 PP

    Ndc1_Nup 446 ksrllskeqkealsestikkk....................v 467
                 +++ l++ +k+++++++ +                       
  KKY24157.1 156 ADEKLEARAKAKIRAEKKEALdrgrvrdvlglssgeagetaE 197
                 455555555555554443333444444444444444444441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1501  (0.0837191); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 1943.26
//
Query:       KKY24158.1  [L=528]
Description: putative signal recognition particle 54 kda protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-71  240.6   1.2    2.4e-71  239.5   1.2    1.6  1  SRP54            SRP54-type protein, GTPase domain
    1.6e-31  108.9   3.8    1.6e-31  108.9   3.8    4.0  2  SRP_SPB          Signal peptide binding domain
      9e-19   67.5   0.2    2.3e-18   66.2   0.2    1.8  1  SRP54_N          SRP54-type protein, helical bundle domain
    3.9e-05   24.1   0.9    0.00012   22.5   0.1    2.2  2  AAA_17           AAA domain
    5.1e-05   23.5   1.8    0.00016   21.9   0.0    2.6  3  AAA_33           AAA domain
     0.0001   21.9   3.2    0.00045   19.8   2.0    2.5  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
    0.00037   20.5   0.0     0.0013   18.8   0.0    1.9  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
     0.0023   18.4   0.0     0.0045   17.4   0.0    1.5  1  AAA_16           AAA ATPase domain
     0.0025   17.1   0.0     0.0052   16.1   0.0    1.5  1  Zeta_toxin       Zeta toxin
     0.0031   17.3   0.2     0.0031   17.3   0.2    1.9  2  AAA_30           AAA domain
     0.0034   17.7   0.1      0.015   15.6   0.0    2.1  2  AAA_22           AAA domain
     0.0054   16.1   0.0      0.012   14.9   0.0    1.6  1  6PF2K            6-phosphofructo-2-kinase
     0.0061   16.5   0.2       0.02   14.8   0.0    1.9  2  APS_kinase       Adenylylsulphate kinase
  ------ inclusion threshold ------
      0.015   15.0   0.7       0.12   12.0   0.1    2.6  2  Thymidylate_kin  Thymidylate kinase
      0.017   15.0   0.0       0.05   13.5   0.0    1.8  1  AAA_31           AAA domain
      0.032   14.2   0.5       0.21   11.6   0.5    2.0  1  ResIII           Type III restriction enzyme, res subunit
      0.044   13.7   0.1       0.15   11.9   0.0    2.0  2  MobB             Molybdopterin guanine dinucleotide synthesis
      0.049   14.0   0.1       0.15   12.4   0.1    1.8  1  AAA_19           AAA domain
      0.058   13.1   0.1       0.17   11.6   0.1    1.8  1  AAA_24           AAA domain
      0.082   13.0   0.1       0.87    9.7   0.1    2.7  2  MMR_HSR1         50S ribosome-binding GTPase
       0.26   11.0   0.1       0.26   11.0   0.1    2.4  3  ATP_bind_1       Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.5   1.2   2.8e-74   2.4e-71       2     196 .]     102     296 ..     101     296 .. 0.99

  Alignments for each domain:
  == domain 1  score: 239.5 bits;  conditional E-value: 2.8e-74
                 EEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE--SSTTHHH CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvikkkeeadpaavakeavekakeekidvvlvDTaGrlqndke 100
                 nv+++vGlqGaGKTtt++KLa+ + ++g k++lv+aDtfRa+A++QLk++a k+++p++++ ++ dp+ va+e+v ++k+ek+++++vDT+Gr++++++
  KKY24158.1 102 NVLMMVGLQGAGKTTTCTKLARFYAQRGFKACLVCADTFRAGAYDQLKQNAIKAKIPYYGSLTQIDPVVVAAEGVARFKKEKFEIIIVDTSGRHRQEAD 200
                 79************************************************************************************************* PP

                 HHHHHHHHHHHHSSSEEEEEEETTBHTHHHHHHHHHHHHSSCSEEEEESTTSSSSTTHHHHHHHHHTS-EEEEE-SSSTTGEEE--HHHHHHHHHT CS
       SRP54 101 lmeelkkikkvvkpdevllvldattgqeavkqakaFkeavgitgviltklDgdakgGaalsiaaelklPikfigvGekiedleefdperlvsrllg 196
                 l++e+++i++++kpd++++vld+t+gq+a +q +aFke+++++++i+tk Dg+a gG+a+s++a++++Pi+f+g+Ge+  dle+f p+ ++s+llg
  KKY24158.1 201 LFAEMEQIQTAIKPDQTIMVLDGTIGQAAEAQSSAFKETADFGAIIITKTDGQAAGGGAISAVAATNTPIIFLGTGEHNLDLERFAPKPFISKLLG 296
                 **********************************************************************************************95 PP

>> SRP_SPB  Signal peptide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       3.8   3.3e+03      14      38 ..     294     318 ..     288     326 .. 0.62
   2 !  108.9   3.8   1.8e-34   1.6e-31       2      98 ..     329     429 ..     328     430 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 3.8
                 HHCCCCCCHHHHCCC.....H...C CS
     SRP_SPB  14 ikkmGplskllsmiPgmsaeakaee 38 
                 +   G++s l++ + +m+++++a +
  KKY24158.1 294 LLGYGDMSGLIEHVQAMTKDNAAAK 318
                 5567888888888888665532222 PP

  == domain 2  score: 108.9 bits;  conditional E-value: 1.8e-34
                 SCTHHHHHHHHHHHCCCCCCHHHHCCC........H...CCCCCHHHHHHHHHTTSBHHHHHSGCG-..H..HHHHHHHHHTTS-HHHHHHHHHHHHHH CS
     SRP_SPB   2 ftlrdlleqlqqikkmGplskllsmiPgmsae...akaeeeaekklkrieaiidSMTkeErdspekllke..sRkrRiArGsGtsvqevnellkqfeqm 95 
                 ft+rdl+e++++i+kmGplsk+++miPg+s +   + ++e ++ klkr+ +i+dSMT++E+ds++k+l +  +R++RiArGsGtsv+ev+e+l+q+++m
  KKY24158.1 329 FTIRDLRENISNIMKMGPLSKVAGMIPGLSGMmqgM-DDEDGTAKLKRMIYIFDSMTAKELDSDGKILVNqpTRMTRIARGSGTSVREVEEVLTQHKMM 426
                 9***************************99887633.3456789*********************9986447*************************** PP

                 HHH CS
     SRP_SPB  96 kkm 98 
                 ++m
  KKY24158.1 427 AQM 429
                 **9 PP

>> SRP54_N  SRP54-type protein, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.2   2.7e-21   2.3e-18       1      75 []       6      83 ..       6      83 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 2.7e-21
                HHHHHHHHHHHHCCSSCGHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHCTTS....S-HHHHHHHHHHHHH CS
     SRP54_N  1 LgkklnsalkklsgkskideedleealkeleeaLleaDVgvkvvkklienvkkkavgekk....lkpkqqvkkivkdeL 75
                Lg+++n+a++ l+++ ++de++++++lke++ aLl+aDV+v++v++l++++k  +v+  +    +++k+ ++++v+d L
  KKY24158.1  6 LGRRINAAVTDLTRSPNVDEKAFDAMLKEICAALLSADVNVRLVQNLRKSIKS-TVNFANlpanTNKKRIIQQAVFDHL 83
                89*************************************************77.999999999999***********87 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   1.4e-07   0.00012       1     108 [.     107     220 ..     107     226 .. 0.77
   2 ?   -1.7   0.1       4.2   3.6e+03      30      39 ..     426     435 ..     374     467 .. 0.61

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.4e-07
                 EE-TTSSHHHHHHHHHHHH...TEE.EEEHHHHHHHHHHTT.TSHSSHHHHC...TSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEES CS
      AAA_17   1 lGgPGsGKgtqceklveky...gft.hlsaGdllreeakrg.glakardemr...klpleekkelqkeaaekiaeeakkkgvlvdghprikeqagfldg 91 
                 +G+ G+GK+t c kl++ y   gf+  l   d +r+ a ++ + +  + ++     l + +   + +e  ++ ++e k + ++vd+  r +++a+++++
  KKY24158.1 107 VGLQGAGKTTTCTKLARFYaqrGFKaCLVCADTFRAGAYDQlKQNAIKAKIPyygSLTQIDPVVVAAEGVARFKKE-KFEIIIVDTSGRHRQEADLFAE 204
                 79**************999888999458889****99866632222223333333677777777777777777776.5679****************** PP

                 SHHHHHHHH..SEEEEE CS
      AAA_17  92 lpkevleelkpdaiill 108
                 +++ +++ +kpd  i++
  KKY24158.1 205 MEQ-IQTAIKPDQTIMV 220
                 *96.99*****887765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.2
                 HHHHHHTTTS CS
      AAA_17  30 lreeakrggl 39 
                 + ++ak+ g 
  KKY24158.1 426 MAQMAKNVGG 435
                 3333333333 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       5.6   4.8e+03     132     138 ..      27      33 ..       9      79 .. 0.60
   2 !   21.9   0.0   1.8e-07   0.00016       1      86 [.     103     199 ..     103     219 .. 0.62
   3 ?   -0.8   0.2       1.8   1.6e+03      26      53 ..     418     445 ..     385     466 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.6
      AAA_33 132 aldrqka 138
                 a+d++++
  KKY24158.1  27 AFDAMLK 33 
                 3333332 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 1.8e-07
      AAA_33   1 lvllvGlpGsGKstlaerl...lkklg..avllssdtlrrrlfgtdqq.skt.......dytrvldrlyqilnelarkalsagrnvildatnlsrrera 86 
                 ++++vGl+G+GK+t  ++l   ++++g  a+l+  dt+r   + + +q  ++        +t   d +    +++a +  ++++ +i+  t  ++r+ a
  KKY24158.1 103 VLMMVGLQGAGKTTTCTKLarfYAQRGfkACLVCADTFRAGAYDQLKQnAIKakipyygSLT-QIDPVVVAAEGVA-RFKKEKFEIIIVDTSGRHRQEA 199
                 79*************9999444445559*********9998887444413334444332122.2233333444444.4566666666666655555444 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.8
      AAA_33  26 vllssdtlrrrlfgtdqqsktdytrvld 53 
                 ++l++ +++ +++++   +k++ +r+ +
  KKY24158.1 418 EVLTQHKMMAQMAKNVGGNKKNMQRAQN 445
                 5667777777777765555555444333 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   2.0   5.3e-07   0.00045       2     153 ..     103     253 ..     102     267 .. 0.76
   2 ?   -3.1   0.0       5.9     5e+03      38      59 ..     387     408 ..     368     433 .. 0.56

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5.3e-07
                 EEEEEESTTCCHHHHHHHHH..CT--SS-EEEEESS-SSCHCCCCCCHCCCT.EEEETTTTECCHCTT-HHHHHHHHHHHH.TT-SEEEEEECT.TTTH CS
        cobW   2 vtvltGflGsGKTtLlnhll..enraglklavivNefgevsiDaellretgveivelenGciCctlredllkelealeere.erldviliEttG.laeP 96 
                 v++++G  G+GKTt  ++l     ++g k  ++  +    +   +l ++++ ++     G +     + ++ ++e +++ + e++++i++ t+G   + 
  KKY24158.1 103 VLMMVGLQGAGKTTTCTKLArfYAQRGFKACLVCADTFRAGAYDQL-KQNAIKAKIPYYGSLTQI--DPVVVAAEGVARFKkEKFEIIIVDTSGrHRQE 198
                 67899999******99999988777888888999998866665555.455455666667888666..77888888777755578**********77777 PP

                 HHHHTTSHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHH CS
        cobW  97 apvafteeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDll 153
                 a +  + e+++++++ d +++v+D+  + ++ e +++ +++   +   ++++KtD  
  KKY24158.1 199 ADLFAEMEQIQTAIKPDQTIMVLDG-TIGQAAEAQSSAFKETADF-GAIIITKTDGQ 253
                 7775669******************.5556666666666666655.578999**975 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.9
                 SCHCCCCCCHCCCT.EEEETTT CS
        cobW  38 evsiDaellretgveivelenG 59 
                 e++ D+++l ++ + ++ ++ G
  KKY24158.1 387 ELDSDGKILVNQPTRMTRIARG 408
                 3444444444444444444444 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.5e-06    0.0013       9      55 ..     111     224 ..     108     344 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.5e-06
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH..................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................... RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep..................................................... 54 
                 G+GKTt++++Lar  a+rg++  lv aD+ +  +   + ++n i+                                                      
  KKY24158.1 111 GAGKTTTCTKLARFYAQRGFKACLVCADTFRAGAY-DQLKQNAIKAkipyygsltqidpvvvaaegvarfkkekfeiiivdtsgrhrqeadlfaemeqi 208
                 99**********************99998744433.333333333366677756655556666666666666666666666666666666666666666 PP

                 ...............C CS
                 ...............x RF
        CbiA  55 ...............d 55 
                                +
  KKY24158.1 209 qtaikpdqtimvldgT 224
                 6655555555544441 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   5.3e-06    0.0045      14     142 ..      92     222 ..      82     244 .. 0.58

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.3e-06
      AAA_16  14 salervrsgrpelvllsGesGvGKsslvrellralekd..........ggiflrgkcdqlesa.....ipysalaqalareellrqlldeaesaeleaw 97 
                 +a++  ++g +++++ +G +G GK++  ++l+r + ++             f +g +dql+++     ipy+  +++++   ++ + +  a+  + e +
  KKY24158.1  92 DAYK-PKKGKSNVLMMVGLQGAGKTTTCTKLARFYAQRgfkaclvcadT--FRAGAYDQLKQNaikakIPYYGSLTQIDP--VVVAAEGVARF-KKEKF 184
                 5565.6678889********************99999966655554321..23333333322233344888776666634..33333333222.22222 PP

      AAA_16  98 rekleealaavpelagaea..srllellkrllallsrderplvlvlD 142
                    + ++ +     +   +   +l++++ ++   +++ ++ +++vlD
  KKY24158.1 185 EIIIVDTSG-----RH--RqeADLFAEMEQIQTAIKP-DQ-TIMVLD 222
                 222222222.....22..2225555555555544444.33.455555 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   6.1e-06    0.0052      11     103 ..      96     192 ..      88     207 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.1e-06
  Zeta_toxin  11 psqerPklillgGqpGAGKselaellkdele.rqgnvvrldpDdlRelhPeyeeilk....adpkkaseltqkdaselvekllqeaiengynii.vegt 103
                 p++ +  +++++G +GAGK+++ ++l++  + r+ ++  + +D++R+    y+++ +    a+   + +ltq d  +++++ ++   +++++ii v++ 
  KKY24158.1  96 PKKGKSNVLMMVGLQGAGKTTTCTKLARFYAqRGFKACLVCADTFRAGA--YDQLKQnaikAKIPYYGSLTQIDPVVVAAEGVARFKKEKFEIIiVDTS 192
                 4457888999***************99988758889999*******987..777666444356677889999999999999999999999987514555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2   3.6e-06    0.0031      18      64 ..     101     150 ..      93     241 .. 0.65
   2 ?   -2.2   0.1       3.4   2.9e+03      62      65 ..     429     432 ..     398     467 .. 0.46

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.6e-06
      AAA_30  18 drvavltGpAGtGKttalkalreaweaag.grviglAptgkaAkv..Lae 64 
                   v +++G  G+GKtt+ ++l++ ++++g +  +++A t +a +   L++
  KKY24158.1 101 SNVLMMVGLQGAGKTTTCTKLARFYAQRGfKACLVCADTFRAGAYdqLKQ 150
                 458999**********************9456678898887754322664 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.4
      AAA_30  62 Laee 65 
                 +a++
  KKY24158.1 429 MAKN 432
                 2222 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       6.8   5.8e+03      39      59 ..      57      77 ..      35      87 .. 0.65
   2 !   15.6   0.0   1.7e-05     0.015       6      98 ..     102     222 ..      97     224 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 6.8
      AAA_22 39 rpevvfvtlpsstsskdllre 59
                +++v f +lp+ t+ k + ++
  KKY24158.1 57 KSTVNFANLPANTNKKRIIQQ 77
                455558888888877777655 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.7e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee..............erpevvfvtlpsstsskdllrellralglelka.............erlssee 77 
                 ++l+ +G  G+GKTt++ +l++ + ++ + +                +   ++ ++p  +s++++   ++ a g+ + +             +  ++ +
  KKY24158.1 102 NVLMMVGLQGAGKTTTCTKLARFYAQRGFKAClvcadtfragaydqLKQNAIKAKIPYYGSLTQIDPVVVAAEGVARFKkekfeiiivdtsgRHRQEAD 200
                 68899*******************887776668998888888888878888888888888888888888888888777778888888888877777777 PP

      AAA_22  78 llealeqalrarav.ielliiD 98 
                 l++ +eq   a +  + ++++D
  KKY24158.1 201 LFAEMEQIQTAIKPdQTIMVLD 222
                 7777777666665555555555 PP

>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.4e-05     0.012       6      56 ..      94     149 ..      89     163 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.4e-05
                 HHHT..S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--.....EEEEEHHHHHHHH CS
       6PF2K   6 vtnlknsklvivlvGLpargKtyiskkltrylkwlgvr.....tkvFnvgkyrrea 56 
                 ++ +k +  v+++vGL   gKt++ +kl r+    g++     + +F +g y + +
  KKY24158.1  94 YKPKKGKSNVLMMVGLQGAGKTTTCTKLARFYAQRGFKaclvcADTFRAGAYDQLK 149
                 555577778999******************99866655111114566666665544 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       5.1   4.4e+03      39      65 ..      50      76 ..      34      83 .. 0.79
   2 !   14.8   0.0   2.4e-05      0.02       2      51 ..     101     150 ..     100     156 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.1
                HHHTTTTTTT--SSHHHHHHHHHHHHH CS
  APS_kinase 39 dnvRhgLnkdLgfseedRkenirrvae 65
                +n+R+ +++ + f +   ++n +r+ +
  KKY24158.1 50 QNLRKSIKSTVNFANLPANTNKKRIIQ 76
                788899999999988888888888865 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 2.4e-05
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT--S CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdLgf 51 
                 + v+++ Gl g+GK+t  ++l++   ++g ++ l+  d+ R g + +L +
  KKY24158.1 101 SNVLMMVGLQGAGKTTTCTKLARFYAQRGFKACLVCADTFRAGAYDQLKQ 150
                 67999************************************999888865 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00014      0.12       3      28 ..     108     133 ..     107     139 .. 0.90
   2 ?   -0.4   0.1      0.91   7.8e+02     127     169 ..     397     440 ..     391     448 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
                      ESTTSSHHHHHHHHHHHHHHTTE.EE CS
  Thymidylate_kin   3 GlDGaGKttqaellkerlkeegikvv 28 
                      Gl GaGKtt + +l++ + ++g k++
       KKY24158.1 108 GLQGAGKTTTCTKLARFYAQRGFKAC 133
                      999******************98855 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.91
                      SHHHHHTSCCTTSS.TTTSHHHHHHHHHHHHHHHHHHHH.TTSTE CS
  Thymidylate_kin 127 dpevalkRlakrde.ldeeeeeqldflrkvrerylelak.ederi 169
                         ++++R+a+++  + +e+ee l+ ++k+++++ + +  +++++
       KKY24158.1 397 NQPTRMTRIARGSGtSVREVEEVLT-QHKMMAQMAKNVGgNKKNM 440
                      5678899999988844566666666.5555555666554355544 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.8e-05      0.05      12      43 ..     111     142 ..     104     210 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.8e-05
      AAA_31  12 GvGKTTtsvnlaaalaklgkkvLlvDlDpQan 43 
                 G GKTTt+++la + a++g k  lv +D+  +
  KKY24158.1 111 GAGKTTTCTKLARFYAQRGFKACLVCADTFRA 142
                 89**********************99997554 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.5   0.00024      0.21      21      84 ..      77     162 ..      43     227 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00024
                 ......................TTSEEE.EEESTTSTHHHHHHHHHHHH-S.....-EEEEESSH..HHHHHHHHHGGGGTGG.... CS
      ResIII  21 s....................krdkrgl.ikmaTGtGKTlvaaklierllkkgkeekflflvprk..slleqtleefkkflseayke 84 
                 +                    k++ ++l ++   G+GKT +++kl++ +++  + + +l+ +++     ++q++++  k + ++y +
  KKY24158.1  77 QavfdhlvslvdphtdaykpkKGKSNVLmMVGLQGAGKTTTCTKLARFYAQR-GFKACLVCADTFraGAYDQLKQNAIKAKIPYYGS 162
                 0444444445555666666644444444477789************999996.5568888888653367888887775555555544 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00018      0.15       1      33 [.     103     135 ..     103     154 .. 0.91
   2 ?   -2.7   0.0       5.9     5e+03      91     110 ..     166     187 ..     137     204 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00018
        MobB   1 vlgivgksgsGKTtLleklipelkarglrvgti 33 
                 vl +vg +g+GKTt  +kl +  ++rg++ +++
  KKY24158.1 103 VLMMVGLQGAGKTTTCTKLARFYAQRGFKACLV 135
                 6899************************98877 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.9
        MobB  91 vDlvlv..EGfkkealpkievl 110
                 +D v+v  EG  + + +k e++
  KKY24158.1 166 IDPVVVaaEGVARFKKEKFEII 187
                 5544433378555555555554 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00018      0.15       9      75 ..     100     163 ..      91     231 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00018
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrA..akelrerlaalgaeatTiHrl 75 
                 k++vl++++  G GKT++ ++  + + ++g    + +l++a t rA   ++l+++   ++a++  + +l
  KKY24158.1 100 KSNVLMMVGLQGAGKTTTCTKLARFYAQRGF---KACLVCADTFRAgaYDQLKQNA--IKAKIPYYGSL 163
                 6788999999************999999994...6899998888862256777666..45554444444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1    0.0002      0.17       3      77 ..     102     195 ..     100     247 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0002
      AAA_24   3 lkiliyGpsgiGKTtlakel.........gpkplfidtek.Glksldadkfpdie.......swedfldevvel........aaeladyktlviDtide 76 
                 + ++++G +g+GKTt++++l         +   ++ dt++ G+   d  k + i+       s    l +++ +        + ++++++++++Dt + 
  KKY24158.1 102 NVLMMVGLQGAGKTTTCTKLarfyaqrgfKACLVCADTFRaGA--YDQLKQNAIKakipyygS----LTQIDPVvvaaegvaRFKKEKFEIIIVDTSGR 194
                 678999**************88888887555666668888544..344443444433534443....33333336666999999999********9776 PP

      AAA_24  77 l 77 
                  
  KKY24158.1 195 H 195
                 5 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1     0.001      0.87       3      87 ..     105     227 ..     103     250 .. 0.56
   2 ?   -1.3   0.0       2.6   2.2e+03      52      90 ..     299     338 ..     288     352 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.001
                 EEEESTTSSHHHHHHHHHT..........................STEEESSSTTSSSSEEEEEEE..........ETTEEEEEEECGGCSSHHHHHH. CS
    MMR_HSR1   3 aivGrpNvGKStLinaltg..........................ekaivsdkpgtTrdinegrvk..........lkgkeielvDtpGliegaseek. 64 
                 + vG   +GK+t   +l +                          ++ai +++p     ++   v           +++ ei++vDt G  ++++ +  
  KKY24158.1 105 MMVGLQGAGKTTTCTKLARfyaqrgfkaclvcadtfragaydqlkQNAIKAKIPYYGSLTQIDPVVvaaegvarfkKEKFEIIIVDTSG-RHRQEADLf 202
                 679999999999999999655555554444444444444443332345555555333222222222222344443233456********.654444446 PP

                 HHHHHHHHHHCTSEEEEEEETT..T CS
    MMR_HSR1  65 glgkaflaleeadlillvvdas..e 87 
                  + ++++  ++ d  ++v+d +  +
  KKY24158.1 203 AEMEQIQTAIKPDQTIMVLDGTigQ 227
                 6666777777789*****9944331 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.6
                 ECGGCSS...HHHHHH.HHHHHHHHHHCTSEEEEEEETTTTCS CS
    MMR_HSR1  52 DtpGlie...gaseek.glgkaflaleeadlillvvdaseekl 90 
                 D+ Glie      +++   +++++ ++ ++ i+ + d++ e++
  KKY24158.1 299 DMSGLIEhvqAMTKDNaAAKETYK-HI-SEGIFTIRDLR-ENI 338
                 889988733222222212222222.33.36777776765.334 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.7   1.5e+03     194     238 ..      44      90 ..      13      93 .. 0.64
   2 ?   11.0   0.1   0.00031      0.26       2      31 ..     107     136 ..     106     143 .. 0.89
   3 ?   -3.3   0.1       7.1   6.1e+03      46      66 ..     415     437 ..     413     447 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.7
  ATP_bind_1 194 e..ekykklaeaiaelleefalvlrflplssekeesiedllslidea 238
                    + +++l ++i+++++  +l  ++      ++  ++ l+sl+d +
  KKY24158.1  44 VnvRLVQNLRKSIKSTVNFANLPANTNKKRIIQQAVFDHLVSLVDPH 90 
                 24577888888888888888888888888888888888888888865 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00031
  ATP_bind_1   2 vGpaGsGKttfvgalseilelrgrsvavvN 31 
                 vG  G+GKtt + +l+ ++ +rg +  +v 
  KKY24158.1 107 VGLQGAGKTTTCTKLARFYAQRGFKACLVC 136
                 899*******************99988775 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 7.1
  ATP_bind_1  46 direlitledvmed..lglgpng 66 
                 +++e++t+ ++m +  +++g n+
  KKY24158.1 415 EVEEVLTQHKMMAQmaKNVGGNK 437
                 58899999999998777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1265  (0.0705561); expected 358.6 (0.02)
Passed bias filter:                      800  (0.0446204); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.52
# Mc/sec: 3074.66
//
Query:       KKY24159.1  [L=458]
Description: putative esterase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.5e-39  133.6   0.0    1.3e-38  133.0   0.0    1.3  1  Abhydrolase_3  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.025   13.5   0.3      0.086   11.7   0.2    1.7  1  COesterase     Carboxylesterase family
      0.085   12.5   0.0       0.15   11.7   0.0    1.3  1  Esterase       Putative esterase
       0.09   12.2   0.0       0.17   11.3   0.0    1.5  1  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.0   0.0     3e-42   1.3e-38       2     146 ..     295     447 ..     294     456 .. 0.86

  Alignments for each domain:
  == domain 1  score: 133.0 bits;  conditional E-value: 3e-42
                    EEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHH.HHTETTCEEEEEEETHHHHHHHHHHHHHHHTT CS
  Abhydrolase_3   2 vyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqaw.elgadpsrivlaGdSaGGnlaaavalrardeg 96 
                    + fHGGG+v+g+l+ +++++++++ e+g+v++ vdYrlAPe ++Paaved+++a++w+++++   +++d++r++++GdSaGG+laa++++ ard+ 
     KKY24159.1 295 INFHGGGWVFGGLANAEETLKRMVMEVGCVAFDVDYRLAPEFRYPAAVEDCWSAFQWILKTQItPFNIDTTRLAVGGDSAGGHLAAVISILARDS- 389
                    67************************************************************99******************************8. PP

                    ---EEEEEEESE-SST........SSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSS CS
  Abhydrolase_3  97 epkvagqvliyPvtdl........ertesesikkaeeladgplltraaldlfwrlylp 146
                    ++++++q+l  Pv dl        + +e+  + + +e++d++ l+ +++++f + +l+
     KKY24159.1 390 NLPLSFQLLTVPVADLlasfnedgSLNENTPYFSYKEMKDTQPLSVERMQYFHEKFLG 447
                    688*********7777655555554444445545567788888888888888887774 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   1.9e-05     0.086      92     204 ..     280     384 ..     276     391 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.9e-05
                 EEEESSSSSTTSSEEEEEEE--STTTS-BGCG..S-THHHHHHHTSEEEEE----HHHHH-B-SSTTSBS-HHHHHHHHHHHHH.HHHGGGGTEEEEEE CS
  COesterase  92 vytPkekkeakkklPVlVwihGggfqtgsase..ydgsaLaaegnvivVtinYRlGvlGFlstgdeeapGNvGllDqvlALrWV.kenIasFGGdperv 187
                 vy P     ++k++   + +hGgg ++g   +     + ++ e +++   + YRl +         e++  +++ D   A++W+ k++I  F+ d  r 
  KKY24159.1 280 VYLPGPV--EEKERGAYINFHGGGWVFGGLANaeETLKRMVMEVGCVAFDVDYRLAP---------EFRYPAAVEDCWSAFQWIlKTQITPFNIDTTRL 367
                 6665533..222334567888888888876553333344555558888888888875.........555567899********86889*********** PP

                 EEEEETHHHHHHHHHHH CS
  COesterase 188 tlfGesAGaasvsllll 204
                  + G+sAG+ ++++ ++
  KKY24159.1 368 AVGGDSAGGHLAAVISI 384
                 *********99887665 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.4e-05      0.15       5     131 ..     273     381 ..     270     389 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.4e-05
                 TEEEEEEEEE.CC.GGTTTEEEEEEE--TTHHC..CHHHHHCHHCCCCHCCT.EEEEEECCCSS-TTTTTSBTTSBB.TTEEETTCCCCCCHCHHHHTH CS
    Esterase   5 greikvqvyLPedyspgrkypvvylldGltgwd..qnfrakelleslaregeiaeviivvvprggessfysdwdlgarfyenategpgaeayetfltqe 101
                 g ei+v+vyLP    ++++ ++++ ++G  gw     ++a+e+l    ++         v+++g+++ f+ d+ l   f  +a+ +++ +a++  l+ +
  KKY24159.1 273 GGEITVRVYLPGP-VEEKERGAYINFHG-GGWVfgGLANAEETL----KR--------MVMEVGCVA-FDVDYRLAPEFRYPAAVEDCWSAFQWILKTQ 356
                 679**********.99************.999822345555555....33........678888888.8777888877788888888888999999999 PP

                 HHHHHHHHCSEECCCEEEEEETHHHHHHHH CS
    Esterase 102 LlplldanfrtapdgravaGqSmGGlgALi 131
                 + p     f++++++ av G+S GG+ A +
  KKY24159.1 357 ITP-----FNIDTTRLAVGGDSAGGHLAAV 381
                 988.....68888888999******98854 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.9e-05      0.17      45     107 ..     342     411 ..     339     442 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.9e-05
                   HHHHHHHHHHHHHTT....S--GGGEEEEEETHHHHHHHHHHH...H-GGG-SEEEEESE---CCCHHCS CS
  Peptidase_S9  45 fdDfiaaaealakeg....yvdserlaitGgSyGGyltgaaln...qrpdlFkaavaevpvvdvlrydsd 107
                   ++D+  a +++ k++     +d++rla+ G S+GG l++++     + +   +  +  vpv+d+l++  +
    KKY24159.1 342 VEDCWSAFQWILKTQitpfNIDTTRLAVGGDSAGGHLAAVISIlarDSNLPLSFQLLTVPVADLLASFNE 411
                   677777777776655222268***************9987643212333345556666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.52
# Mc/sec: 2645.24
//
Query:       KKY24160.1  [L=116]
Description: putative ring-2 like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-27   94.2   0.0    4.6e-27   94.0   0.0    1.1  1  DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA b


Domain annotation for each model (and alignments):
>> DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.0   2.6e-31   4.6e-27       1      81 []       5      92 ..       5      92 .. 0.96

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 2.6e-31
                   HHHHHHHHHHTTS-TT-BEEHHHHHHHTT.TSCHHHHHHHHHTSSBTTTSGGGGEEBTTSBCCTTTT.........CHHHHHHHHHHTTS CS
  DNA_binding_1  1 afqqrVwellrqIpyGkvttYgeiAkllgkpkaaraVgqalaanplailvPcHRVvgadgklggyag.........glerkralLeaEgv 81
                   +fq+rV++ l  Ip+G+vt+Y+ +Ak++g  +++raVg+al+ np+a+ vPcHRV++a+g +gg++g         + ++k +lL +Egv
     KKY24160.1  5 EFQERVYAHLLLIPSGRVTSYAILAKAIG--SSPRAVGGALRCNPFAPEVPCHRVIAANGFVGGFKGdwekapsgiNQAKKLELLHSEGV 92
                   6****************************..**********************************88889999977788899******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 865.35
//
Query:       KKY24161.1  [L=443]
Description: putative inner membrane protein oxa1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-18   65.7   2.4      7e-18   65.1   2.4    1.3  1  60KD_IMP  60Kd inner membrane protein
  ------ inclusion threshold ------
        1.2    9.0   0.0        1.2    9.0   0.0    2.6  3  CHD5      CHD5-like protein


Domain annotation for each model (and alignments):
>> 60KD_IMP  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   2.4   7.8e-22     7e-18       4     165 ..     124     316 ..     121     317 .. 0.86

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 7.8e-22
    60KD_IMP   4 aIilltiivrlillpltlkqlkssakmqelqPelkeiqekyk......kd.k.qklqqemmklYkkegvnplaGclplLiqlpifialyrvlrsla... 91 
                 + i+  i+vr+i++ +++k+  ssak q+l+P  + + e+ k      +  k  ++q+e+m l k++++  +  +lp++ q ++ ++++r lr +a   
  KKY24161.1 124 SAIVAAILVRAIFVRMQIKSSDSSAKWQQLKPLHDPLMEQLKaargsgDTfKmAQVQKELMSLRKQANMKLVPMFLPVIGQGVLGFGIWRNLRGMAelp 222
                 4467899********************************99999999743443779**************************************99888 PP

    60KD_IMP  92 .......sf.wikdLsapd....lpillavttflqqklsks.......kkm.qkmmlyvmplmilffslsfpaglvlYwlvsnllsiaqqliin 165
                        sf w++dLs +d    ++   a+ ++l++k ++s       +++ q ++  ++p++ +++ ++ pa + +Y+l+s+ll+++ + +i+
  KKY24161.1 223 ipalekeSFlWMSDLSIRDktfgIAAAQAACMYLTMKKNASaasvsgqQQQfQDIIRRALPVFSFVVIAFQPAIVQIYFLTSSLLNLGITSLIR 316
                 88777765579******9999888888888999999999543334343244699*********************************9998886 PP

>> CHD5  CHD5-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00013       1.2      56      99 ..     139     183 ..     137     205 .. 0.75
   2 ?   -2.2   0.0      0.36   3.2e+03      87     110 ..     266     289 ..     255     320 .. 0.47
   3 ?   -2.3   1.9      0.39   3.5e+03      41      53 ..     394     406 ..     368     437 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00013
        CHD5  56 nsisaqDefAkWaKlnRkldkleeeleklkkelsasks.sfkkkl 99 
                  +i + D  AkW  l+  +d l+e+l++++ + ++ k+ +++k l
  KKY24161.1 139 MQIKSSDSSAKWQQLKPLHDPLMEQLKAARGSGDTFKMaQVQKEL 183
                 5899************************98887766541344444 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.36
        CHD5  87 elsaskssfkkklkkvllvlttvp 110
                 ++s ++++f+ ++ ++l v+  v+
  KKY24161.1 266 SVSGQQQQFQDIIRRALPVFSFVV 289
                 333344444444443333332222 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.39
        CHD5  41 qrklkkellklke 53 
                 +r+ ++ + k ++
  KKY24161.1 394 TRQQREARAKKQR 406
                 2222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1568  (0.0874561); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 2947.46
//
Query:       KKY24162.1  [L=419]
Description: putative cdc48-dependent protein degradation adaptor protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-23   80.7   0.1    2.1e-22   79.5   0.1    1.7  1  SEP       SEP domain
    2.3e-14   53.4   0.0    3.9e-14   52.6   0.0    1.4  1  UBX       UBX domain
    3.6e-12   45.9   0.5      6e-12   45.2   0.5    1.4  1  UBA_4     UBA-like domain


Domain annotation for each model (and alignments):
>> SEP  SEP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.1   3.5e-26   2.1e-22       1      76 []     228     301 ..     228     301 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 3.5e-26
         SEP   1 ltlwknGFsvdDGelrsyddpenaeflesikkGevPeelekvekgeevevnledrrneeykppkkpkfkaFsGsGr 76 
                 l++w++GFs+dDGel+++ddp n+++le i++G +P ++++v +g++v+v+++ +++  y++pk+ k+k+F+G+G+
  KKY24162.1 228 LHFWSDGFSIDDGELYRSDDPHNRRILEGIRQGSAPLSIMNVLPGQDVDVEIQ-QHEGPYVKPKQ-KYKPFEGQGQ 301
                 79**************************************************9.55999**9986.7********7 PP

>> UBX  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   6.6e-18   3.9e-14       2      80 ..     338     416 ..     337     417 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 6.6e-18
                 TTSSEEEEEEEETTSTEEEEEEESSSBHHHHHHHHHHHCCCCCTS.EEEEETTTTEEGGCCCCSBCCCCTTTSCEEEEEE CS
         UBX   2 eaedatrlqiRlpdGsrlvrrFkksdtlesvyeyVdsklfekeep.FqLltsfPrreltksdkktLsdlgllpnstlvle 80 
                 e ++a++lq+Rl dG+rl+ rF+ ++t+ +vy +V+      +++ + L+t+fP + lt++   +L +l  ++++ +v++
  KKY24162.1 338 ESQPAVTLQVRLGDGTRLTSRFNTTHTIGDVYSFVSAASSSSADRsWVLATTFPSKDLTDKA-AALGELSDFKRGGVVVQ 416
                 56889******************************99887766544***************8.**************998 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.5     1e-15     6e-12       1      40 [.       9      48 ..       9      51 .. 0.95

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 1e-15
       UBA_4  1 deliaqFqaiTGadeekArqlLeannWdLerAislyFdsg 40
                del+aqF+++TG+ + +A+++L+a+++++++A++ +F++ 
  KKY24162.1  9 DELVAQFVQVTGSQPSEAMEYLTAHDFNIQTALADFFAEA 48
                8************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2967.90
//
Query:       KKY24163.1  [L=260]
Description: putative cas1 appressorium specific protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-45  153.3   3.8    1.6e-44  152.5   3.8    1.4  1  Egh16-like  Egh16-like virulence factor


Domain annotation for each model (and alignments):
>> Egh16-like  Egh16-like virulence factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.5   3.8   9.1e-49   1.6e-44       2     183 .]      20     222 ..      19     222 .. 0.91

  Alignments for each domain:
  == domain 1  score: 152.5 bits;  conditional E-value: 9.1e-49
  Egh16-like   2 aHgvitkvtGangvngpglgva.dgtprdgtsrasgsqaDttvfrdkeikkkkasglGrtlgsgkvniaaeiaklmagaesglptvsaggtltmtvhqv 99 
                 aHg++  +tG++g+ng++lg+    +p +g +   +++ Dttvf+ +     +a+++G+t  +g +++++ ++++ma ++++lp+vs+gg+l+ t+h v
  KKY24163.1  20 AHGKVSVATGDQGGNGTALGIMgAVIPGEGRN--RETEVDTTVFDGS-----NADACGQTD-NGDNEVESGVQQAMALSGDTLPQVSQGGSLSGTLHIV 110
                 9*********************6667777777..457*******544.....5899****9.8************************************ PP

  Egh16-like 100 nqDGaGpltckiDststgtdakalqkaevtknvpGkggl............................saakntdfplkvqlpagltCtGtvggaknvCi 170
                 ++DGaGp+++ iDst+tg + ++ +++evt++vpG++g                              +    + p++v++p++ +CtGtv+g++nvC+
  KKY24163.1 111 TSDGAGPYRAFIDSTGTGDNFSEDNELEVTQQVPGDDGEirkddkrfwaralqsvglmkrasninedYTIYLIKQPFNVAIPSDASCTGTVAGQSNVCM 209
                 *****************8777777899*********777799999999999999999988876655437888899************************ PP

  Egh16-like 171 vRceNaakaGPFG 183
                 v++ N ++aGPFG
  KKY24163.1 210 VKLVNPSNAGPFG 222
                 ************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1723.51
//
Query:       KKY24164.1  [L=273]
Description: putative tetrahydroxynaphthalene reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-53  181.3   2.8    3.8e-53  180.5   2.8    1.3  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    3.9e-48  163.5   3.4      5e-48  163.2   3.4    1.1  1  adh_short     short chain dehydrogenase
      2e-14   53.9   1.9    2.7e-14   53.5   1.9    1.1  1  KR            KR domain
      0.004   16.3   0.0     0.0055   15.9   0.0    1.1  1  CABS1         Calcium-binding and spermatid-specific protein 
  ------ inclusion threshold ------
      0.024   14.1   0.2      0.061   12.8   0.2    1.6  1  Epimerase     NAD dependent epimerase/dehydratase family
      0.066   13.5   1.7       0.77   10.1   0.1    2.4  2  GARS_C        Phosphoribosylglycinamide synthetase, C domain
       0.11   11.6   0.1       0.14   11.2   0.1    1.1  1  HypD          Hydrogenase formation hypA family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.5   2.8   1.5e-56   3.8e-53       3     232 ..      28     270 ..      26     271 .. 0.93

  Alignments for each domain:
  == domain 1  score: 180.5 bits;  conditional E-value: 1.5e-56
                   TTSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                    +g+G++iAk+la++Ga v++ +++ ++     v+++++++g++v +++DV++  ++++++ee+ ++fgk+Di++nn g+     ++ +++++e +d
    KKY24164.1  28 GRGLGAGIAKELASRGAAVCVNYARSAKaaLGVVQDIESQGGRAVaIQADVSKVPEITRMFEEALAHFGKIDIVMNNSGMESF--AKEEDVTEEMYD 122
                   59**********************999976799*********9966************************************9..8889******** PP

                   HHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSB.STTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG.GGGSTT....... CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeggsivnlssvgaerv.vpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTla.asgikg....... 184
                    ++  n+++ f +a++al+++++gg+i+ +ss++a+++ vpn++ y+ +Kaa+e+++r++ ++ g+kgi+vN ++pg ikT++ a+++ +       
    KKY24164.1 123 AVFGLNTRAQFFVAQHALKHLTNGGRIIFMSSIAATMSgVPNHALYAGSKAAVEGFVRSFSADAGHKGITVNGIAPGGIKTDMfAANAWHyapgadp 219
                   ***********************************9887********************************************74444434444545 PP

                   ...HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 185 ...fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                       d++++ +++  pl+r++ p+++ ++++fLa +++++i+Gq++   gG
    KKY24164.1 220 swsLDDIEAGIAKLCPLKRIAVPKDISRVIAFLAHQDSEWINGQIIKLSGG 270
                   55567799***************************************9999 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.2   3.4     2e-51     5e-48       1     189 [.      20     208 ..      20     213 .. 0.97

  Alignments for each domain:
  == domain 1  score: 163.2 bits;  conditional E-value: 2e-51
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 kvvl+tG ++G+G  iakela++Ga v v ++rs++++  v++ ++++g +a+aiq+Dv++  e+ +++e+a +++gk+d+++nN G++ +++ ++++e
  KKY24164.1  20 KVVLITGSGRGLGAGIAKELASRGAAVCVnYARSAKAALGVVQDIESQGGRAVAIQADVSKVPEITRMFEEALAHFGKIDIVMNNSGMESFAKEEDVTE 118
                 89************************************************************************************************* PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG.TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvag.kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 e +++v+ +N  + f +++++l+++   ++GrI+++sS+a+   +v++ a Y+ sKaav+g++rs++ +   +gi+vn++aPG+++Tdm ++
  KKY24164.1 119 EMYDAVFGLNTRAQFFVAQHALKHLT--NGGRIIFMSSIAAtMSGVPNHALYAGSKAAVEGFVRSFSADAGHKGITVNGIAPGGIKTDMFAA 208
                 ************************87..9**********9956689*******************************************875 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   1.9   1.1e-17   2.7e-14       2     172 ..      21     192 ..      20     196 .. 0.89

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 1.1e-17
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 ++litG   gLG  +a+ la++ga+  v  +Rs    +++   ++ +e++g +  +++aDvs+  ++++++ee+ a++++i  v++  g+   ++ e++
  KKY24164.1  21 VVLITGSGRGLGAGIAKELASRGAAVCVNYARS---AKAALGVVQDIESQGGRAVAIQADVSKVPEITRMFEEALAHFGKIDIVMNNSGMESFAKEEDV 116
                 579******************************...3456679******************************************************** PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHH.HH--TT-HHHHHHHHHHHHHHHHHHH.HHHTEEE CS
          KR 101 taedleqvlapKvkGawnLhelled..esldffvlfSSiag.llgsagqanYaaaNaflDalaeyrrs.qglpavs 172
                 t+e++++v+    ++   + +   +  ++   ++++SSia+ + g + +a Ya   a +++++++ ++  g+++++
  KKY24164.1 117 TEEMYDAVFGLNTRAQFFVAQHALKhlTNGGRIIFMSSIAAtMSGVPNHALYAGSKAAVEGFVRSFSAdAGHKGIT 192
                 *********99999988876655554789999******9986789*****************99765414555555 PP

>> CABS1  Calcium-binding and spermatid-specific protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.2e-06    0.0055     215     274 ..      69     131 ..      38     133 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.2e-06
       CABS1 215 eispsteknvttiPditalteekit...eidlilseddpnavakltdsdeekfitvfelttsa 274
                   + + + +v  +P+it + ee ++   +id+++++   ++ ak  d  ee + +vf l t a
  KKY24164.1  69 GRAVAIQADVSKVPEITRMFEEALAhfgKIDIVMNNSGMESFAKEEDVTEEMYDAVFGLNTRA 131
                 4456778899************8753338******************************9977 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   2.4e-05     0.061       1     168 [.      22     194 ..      22     202 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.4e-05
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHH....H.T-SEEEE--S---HHHHHHSHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfke....e.qpdavihlAavggvaassedpadf 87 
                 +l+tG    +G+ ++k+l+++g  v +   +s + + +  +d+         +++d+ +  +++r+f+e    + ++d+v++  +  + a + +  +++
  KKY24164.1  22 VLITGSGRGLGAGIAKELASRGAAVCVNYARSAKAALGVVQDIesqggraVAIQADVSKVPEITRMFEEalahFgKIDIVMNNSGMESFAKEEDVTEEM 120
                 79**********************9999999899999988888******98899999999988887775222234677777776633333333333333 PP

                 HHH....HTHHHHHHHHHHHHH..TCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
   Epimerase  88 iek....nlqgtlnlleaarka..gvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilr 168
                 +++    n++ +  +++ a k+  +  r++f+sS  +   +             ++ +  Ya +K+a+e  v+++ a+ g + i+++
  KKY24164.1 121 YDAvfglNTRAQFFVAQHALKHltNGGRIIFMSS--IAATMS-----------GVPNHALYAGSKAAVEGFVRSFSADAGHKGITVN 194
                 3331111555555556666565443338888887..333222...........3467888999999999999999999998888775 PP

>> GARS_C  Phosphoribosylglycinamide synthetase, C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.3     0.076   1.9e+02      34      56 ..      54      85 ..      11     105 .. 0.69
   2 ?   10.1   0.1    0.0003      0.77      18      70 ..     113     177 ..     106     189 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.076
                E.........EEE-SSEEEEEEEEESSHHHHH CS
      GARS_C 34 k.........lvtsGGRvlavvavgetleeAr 56
                +         + ++GGR +a+ a  +++ e  
  KKY24164.1 54 AkaalgvvqdIESQGGRAVAIQADVSKVPEIT 85
                2566777667899*****99988766666555 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0003
                 T-EEBS..........TTEEEEESSEE..EEE-SSEEEEEEEEESSHHHHHHHHHHHHTTCB-TT CS
      GARS_C  18 gkeitg..........egvkvfhagtk..lvtsGGRvlavvavgetleeArakayeavkkikfeg 70 
                 ++ +t+          ++++ f a  +   +t+GGR++ ++++++t++   ++a  a +k  +eg
  KKY24164.1 113 EEDVTEemydavfglnTRAQFFVAQHAlkHLTNGGRIIFMSSIAATMSGVPNHALYAGSKAAVEG 177
                 555544554444444433445555554556*****************999888887766666654 PP

>> HypD  Hydrogenase formation hypA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   5.4e-05      0.14      53     142 ..      43     137 ..      37     189 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.4e-05
                 --TTTTS-HHHHHHHH....HHHHH--EEEEE-CCHHG---TT--HHHHHHTT-EEEE-SSHHHHHHHHHH-TTSEEEEEEE.E-HHHHHHHHHH CS
        HypD  53 GCpVCvtpeeeidkai....elaekeevilatfgDmlrvpgskksLleakaegadvrivyspldalkiakenpdkevvflav.GFEttapatala 142
                 G  VCv  +++ ++a+    ++ ++ +  +a  +D+ +vp  ++ ++ea a+ +++ iv+      ++ake+  +e ++ av G++t a    ++
  KKY24164.1  43 GAAVCVNYARSAKAALgvvqDIESQGGRAVAIQADVSKVPEITRMFEEALAHFGKIDIVMNNSGMESFAKEEDVTEEMYDAVfGLNTRAQFFVAQ 137
                 78899998888877761111455667899*******************************************99999998876888877654332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 1794.41
//
Query:       KKY24165.1  [L=457]
Description: putative transcription factor cmr1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       215  (0.0119917); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 2832.75
//
Query:       KKY24166.1  [L=2133]
Description: putative polyketide synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-75  252.4   0.0    1.1e-74  251.2   0.0    1.6  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    2.9e-69  233.5   0.1    1.3e-68  231.4   0.1    2.2  2  SAT              Starter unit:ACP transacylase in aflatoxin b
    4.2e-39  134.9   0.0    1.1e-38  133.6   0.0    1.7  1  Acyl_transf_1    Acyl transferase domain
      2e-35  121.4   0.1    5.2e-35  120.0   0.1    1.8  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    1.7e-23   82.7   4.9    2.5e-12   47.0   0.3    2.5  2  PP-binding       Phosphopantetheine attachment site
    4.4e-20   72.8   0.0    2.4e-19   70.4   0.0    2.2  2  Thioesterase     Thioesterase domain
    3.9e-14   52.6   0.0    6.7e-14   51.8   0.0    1.3  1  PS-DH            Polyketide synthase dehydratase
    1.7e-06   28.4   0.0    4.2e-06   27.2   0.0    1.7  1  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    8.5e-06   26.5   0.1     0.0025   18.5   0.0    2.8  3  Abhydrolase_6    Alpha/beta hydrolase family
     0.0018   17.7   0.1       0.01   15.2   0.0    2.2  3  Thiolase_N       Thiolase, N-terminal domain
  ------ inclusion threshold ------
       0.13   12.5   0.2       0.32   11.2   0.2    1.6  1  Egg_lysin        Egg lysin (Sperm-lysin)


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.2   0.0   6.6e-78   1.1e-74       2     253 .]     365     614 ..     364     614 .. 0.95

  Alignments for each domain:
  == domain 1  score: 251.2 bits;  conditional E-value: 6.6e-78
                    --EEEEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggndveefwelLlegrdaiselpadrwdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllleaa 96 
                     p+aivGm++rfP++ d+e+fw++L +g d  +e+p dr++++++ dp++++ ++++t++g+f++    fd++ff++sprea+++dp+qrl+l++a
     KKY24166.1 365 APIAIVGMAGRFPDAADHEQFWDNLEKGLDVHREVPPDRYNVKTHTDPTSKIRNTSHTPYGNFIKdPGLFDARFFNMSPREAAQTDPMQRLMLVTA 460
                    59********************************************************************************************** PP

                    HHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHH CS
  ketoacyl-synt  97 wealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqsl 189
                    +ea+e  g+ p ++ +++   +g f G ++ d+++++a +    + ++++ + g  ++++ +gr++y++++ Gps++vdtACsSs++a+++a+ sl
     KKY24166.1 461 YEAMEMGGIVPGRTPSTKrdrIGTFYGQTSDDWREINAAQ----DIDTYF-ISGG-VRAFGPGRLNYFFKWSGPSFSVDTACSSSFAALNVAITSL 550
                    ***********9994444466**********997755444....478899.9999.**************************************** PP

                    HTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 190 rsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    r+ge+d+a+ GG+++l++p  ++g+s+ ++ls++g ck+fd++adG+++G+Gv  ++Lkr +da
     KKY24166.1 551 RAGECDTAFSGGANVLTNPDIFCGLSRGHFLSKTGSCKTFDESADGYCRGDGVCSIILKRMDDA 614
                    ************************************************************9997 PP

>> SAT  Starter unit:ACP transacylase in aflatoxin biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.4   0.1   7.7e-72   1.3e-68       1     240 []       4     240 ..       4     240 .. 0.95
   2 ?   -3.2   0.0       3.4   5.5e+03     195     233 ..    1044    1084 ..    1036    1087 .. 0.81

  Alignments for each domain:
  == domain 1  score: 231.4 bits;  conditional E-value: 7.7e-72
         SAT   1 llFGDqtadvlpeLrkLlqakenplLrsFLekasealraeisrlpaaerkslprftslqellerysesglkspalssallciaqlaqfivyleenpeey 99 
                 ++FGDqtad+ ++L k++++k + l  +FL +as+a+r+eis   ++  +++p+f ++qel++ry++++ ++pa++s+l+ci qla+fi y+e++p++y
  KKY24166.1   4 YIFGDQTADCRSFLTKVFRHKGSLLQDNFLAQASRAIREEISAR-EHGVNNIPEFGTVQELADRYYTQDVADPAIESTLVCISQLAHFIGYFEDQPQKY 101
                 79****************666666666***************96.577778************************************************ PP

         SAT 100 ps.pestylvGlCtGllaAaavacskslseLvplaveavrvafrlGlevarvaarleegsssssesWslavtglseeelekalaefneekglppasrvy 197
                 ps +++ +lvGlCtGll+Aaava+s+sl eLvp a+e+vr+afr+G++va++a+r+  g+   ++sWs +v+  +  +++ka+++f++++++p  sr++
  KKY24166.1 102 PSfSKDVRLVGLCTGLLSAAAVAASNSLVELVPRAIETVRIAFRTGSLVATTAERFG-GDVG-KDSWSSIVVS-DFTSAQKAIDRFHNDREIPFGSRLW 197
                 **999****************************************************.5444.899******6.************************* PP

         SAT 198 isavssssvtisGpPstleallksskakkkkkksklpiyapyH 240
                 isa+s++svtisGp ++ +++l+ ++  +k+ + +  iy+pyH
  KKY24166.1 198 ISATSNTSVTISGPTTVKDKFLEAQEYLPKTARARAAIYGPYH 240
                 ******************************************* PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.4
         SAT  195 rvyisavssss.vtisGpPstleallksskakkkkkks.kl 233 
                  rv +++v++ + +++sG  + ++++ +s +a  +k+++  l
  KKY24166.1 1044 RVEVACVNGAAeTVLSGKVEDIDEIASSLNAIGTKSTNlAL 1084
                  8999****9999******99999999988887777665455 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.0   6.7e-42   1.1e-38       2     298 ..     895    1194 ..     894    1209 .. 0.87

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 6.7e-42
                     EEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT-.-HHHHHHS--TTGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHH CS
  Acyl_transf_1    2 fvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygf.svldvlrnnpeglldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGE 94  
                     f ++GqGsQ  +MG  L++ts+ f   i++ d    + +gf s   ++r  +  +  +   vq++++ +q+al+ l++s Gv+p +v+GHSlGE
     KKY24166.1  895 FAYTGQGSQYTAMGKVLYETSAQFSRDIDQYDLIAVQ-QGFpSFKPLIRGSEDVKNLRPTAVQIGMTCLQMALTRLWSSWGVKPSVVIGHSLGE 987 
                     89*****************************976655.898678888887776666666789******************************** PP

                     HHHHHHCCSSSHHHHHHHHHHHHHHHHHHT..S-EECCEECS....HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEE CS
  Acyl_transf_1   95 lAaavvagalsseeallavvlrsrlmmqla..gpgdmaavel...aeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalv 183 
                     +Aa+ +ag ls  + +  v  r  l  ++   g  +m+a++    +  +  l+ + +v +a++n+  ++v+sg+ e ++e+   +++ g     
     KKY24166.1  988 YAALNAAGVLSVYDTIYLVGKRATLLEEMCtvGTHAMLAIKTplaTLGTSLLKFEGRVEVACVNGAAETVLSGKVEDIDEIASSLNAIGTKSTN 1081
                     *************************9998745778899988888444455555999*********************************9999* PP

                     ECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHH.HHHCHHHHHHHHHHHCHCCHCCHHTTSSS....ECC-CCEECSSSSCCH CS
  Acyl_transf_1  184 envnvavhspqvdaiadalasaladiaprkpkvakisstsldes.serelsaeywvanlrspvrfaeavlsaae....tiplvfveispHslll 272 
                      +  +a+hs qv++i ++      +++ + p+++ is + +d   +   + a+y  +  r++v f   +++a++    +  +v vei +H++  
     KKY24166.1 1082 LALPFAFHSSQVEPILPEFERIASSVTFHRPRIPIISPLLSDVVtESSIVNAQYLSNHCRQTVDFLGSLTAAMAknviKSSNVWVEIGAHPICS 1175
                     *******************999999****************99945556789*************99999985512214579************ PP

                     CCCCCCCHHGGG-TCCCCCCTEETTS CS
  Acyl_transf_1  273 aalektlksaedvksatlvGklkrdl 298 
                     + ++ tl        a   +++++d 
     KKY24166.1 1176 NMVKSTLS-------APTFPTMRKDE 1194
                     ******98.......45555555555 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.0   0.1   3.2e-38   5.2e-35       1     117 [.     622     742 ..     622     743 .. 0.97

  Alignments for each domain:
  == domain 1  score: 120.0 bits;  conditional E-value: 3.2e-38
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG....SCTSEEE-THHHH-B- CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar....kqplavgSvKsniGHl 90 
                      ++vikg+++n+++ + s+t+p +e qa +  k+l e+gvdp++++yve+hgtgt++gD iE+e++++vf+ + r    +qpl++g+vK+niGH+
       KKY24166.1 622 LGVIKGIGTNHSADAVSITHPCAENQAFLFSKVLTETGVDPREISYVEMHGTGTQAGDGIEMESVSSVFAPRVRkrrpDQPLYLGAVKANIGHG 715
                      589********99*********************************************************98888899**************** PP

                      GGGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  91 eaAaGvaelikvvlalkhgvipptlnl 117
                      ea +Gv+++ikv+++l++ +ipp++++
       KKY24166.1 716 EAVSGVCAMIKVLMMLEKSAIPPHAGV 742
                      ***********************9875 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.6   1.7e-12   2.8e-09       5      67 .]    1641    1703 ..    1638    1703 .. 0.95
   2 !   47.0   0.3   1.5e-15   2.5e-12       2      63 ..    1762    1823 ..    1761    1827 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 1.7e-12
  PP-binding    5 elvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  el+a  ++v+++e++++    dlG+DSl+++++ ++++ee++++ip++ + ++ +++el  +l
  KKY24166.1 1641 ELIAAEIEVDQSELADSVQWTDLGVDSLMSLTISGKFREELDFDIPSTLFTDFASVGELKSHL 1703
                  79999*********************************************99******98775 PP

  == domain 2  score: 47.0 bits;  conditional E-value: 1.5e-15
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlael 63  
                  ++r+ +ae ++++ eei+ +tdl +lG+DSl+++++l++l+e+ g+e+++++l ++p+l+ l
  KKY24166.1 1762 TIRATIAEEMEIEIEEIAESTDLNSLGMDSLMSLTILGSLREKCGLELEPTVLADNPSLGHL 1823
                  79***************************************************99****977 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       2.2   3.5e+03      66      83 ..     976     993 ..     971     997 .. 0.80
   2 !   70.4   0.0   1.5e-22   2.4e-19       2     217 ..    1882    2117 ..    1881    2131 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.2
                   SSEEEEEETHHHHHHHHH CS
  Thioesterase  66 gPyalfGhSlGgllAfev 83 
                   +P +++GhSlG + A  +
    KKY24166.1 976 KPSVVIGHSLGEYAALNA 993
                   6889*******7766655 PP

  == domain 2  score: 70.4 bits;  conditional E-value: 1.5e-22
                    EEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTSTSHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHC...... CS
  Thioesterase    2 pLflfppagGsasvfrslasklsdpvvevlavqlpgrerdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesq...... 90  
                     Lflfp++ Gsa++++s+    s++   v+++  p  +++++  ++ie +   y+e+++++qp gPy+l+G+S+Gg +A+ev+rqL +       
    KKY24166.1 1882 NLFLFPDGSGSATSYASIPPIDSKS-LCVFGLNCPFMKDPTSYTCGIEGVSKLYLEEVLRRQPTGPYYLGGWSAGGVVAYEVCRQLDEMnrinps 1975
                    79*******************9998.66666666666679**********************************************998889999 PP

                    .T-SEEEEEEESCCCCCCHHCHHCCCHTTHHTHHHHHCCTTHHHCCTTTHCCHHHHHHHHHHHHHHHHHTCCS...-TTSCSEHHCEEEEEEGSS CS
  Thioesterase   91 .Glavkslflidssapseteaqeasrraedeefveeltdlggtepeelledeellsellpalradyraleqys...lrpeaaqklratlfngsdd 181 
                       +v+ l+l ds+ p +  ++   r  +  + +++l d +g+ p  ll+  e+   +++al a++  l++ +   ++p+   ++   +   ++d
    KKY24166.1 1976 gNYTVAKLVLLDSPCPIR-LEPLPARLHHFFDEIGLLGDGKGNTPGWLLPHFEY---SIKALSAYKPELKSQHdfaAPPTLLIWATDGVCKSPED 2066
                    7789************99.99999999988889999999999977777777755...55555555555555544444444444333333333333 PP

                    -CTCCCCCCCHCH................CHCTCESCEE.EEEESSHCCHHHS CS
  Thioesterase  182 klkdldtlelaer................weqktsgevs.vhvlegdhfylle 217 
                    +    + +++  +                w+    ge    + +eg+hf++++
    KKY24166.1 2067 PRPPPQ-EDDP-KsmkwlldnrtdfgpngWDYLLGGENCeYETIEGNHFTMMK 2117
                    322222.1111.12333333334666666888888765449999999999997 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   4.1e-17   6.7e-14      31     294 ..    1306    1577 ..    1299    1581 .. 0.82

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 4.1e-17
                  TSEEETTEEB--TTHHHHHHHHHHHHTS.....---.-EEEEEEEE----.B.....--SS-EEEEEEEEE-TTS-E....EEEEEEE-SS-TT.EE CS
       PS-DH   31 rDHrvdgkvvlPgagylemaleAarqlt.....geskavelrdvsilkalvl.....pedepvevqlslepeedgadrawvefeifSregggeewte 117 
                    H ++g  + P   y  mal + + ++     g+++ + l     +++l l     pe++ v++q+ +        +++++f ++S eg+++  + 
  KKY24166.1 1306 SGHIMNGAGLCPSSLYADMALGVTEYAYsllrpGQKSDMNLGTMDNPNPLLLkninsPEEQKVQMQVKVDLT-----HNKADFVLTSGEGKAQ--KI 1395
                  679999999999999999999999999977776444577777777777776622221555566666666666.....34558*********97..89 PP

                  EEEEEEEE-----.........--B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEETTEEEEEE---GGGSSTTTT-SB- CS
       PS-DH  118 hatGtvrlaegaa.........aaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrgdgealaelrlpeelaggesayvlh 205 
                  ha+  v ++++a              d  ++ +++ e+ ++ ++  +  Y+ + a+ + y ++Fqg++++  +  e +++ ++  ++ ++++ + l 
  KKY24166.1 1396 HAKCVVLFENAANwtaqwqrtaFLIKDRMKMLKKKMEEGDADKIGRKMAYKLF-AALVSYSERFQGMKEVVLDSPELEGTSTVRFQAGPQDGSFYLS 1491
                  999999999888898888865533345555677889999999999********.999***************988999999999777777778**** PP

                  HHHHHHHHHHG..GG----------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEEESEEEEE--XX CS
       PS-DH  206 PallDaalQllaaalsaeaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGrvvaeieglrlrrvere 294 
                  P+ +D+  +l +  +  ++ ++++ y+  ++e++r+   +   +++  ++++++ +g++++++d++++d   +vv  + glr++ ++r+
  KKY24166.1 1492 PYFIDSTAHLSGFIV-NATADSKSIYISHGWESMRYA-CKLDTEKQYNCYVKMQPAGGKMVAGDVWIFD-GEEVVGVVGGLRFQCIPRQ 1577
                  *********877777.5789*****************.78888999**********************7.8889999999***999987 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   2.6e-09   4.2e-06      26     107 ..     775     857 ..     753     865 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 2.6e-09
  KAsynt_C_assoc  26 i..vgvNsfGfGGsnvHviLksnkkekrkeeskeeslprLlvlsgrteeaveallekleehlldaellsllneilseeisrlpy 107
                        v  N f+  G n+ vi++  ++++ k++ + ++  +++++s+++ +a ++ l+++ ++ ++++ ++l++  +++  +r+ y
      KKY24166.1 775 KriVFLNNFSAAGGNTAVIMEDGPEKNIKQKVD-SRMTQVIAISAKSLAAFKKSLQRFTQYVKNNPNCDLADLSYTTTARRHHY 857
                     234889********************9999999.9**********************************988777777666543 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.4   8.9e+03      65     128 ..     106     201 ..      71     258 .. 0.44
   2 ?    4.8   0.0     0.024        39      62      86 ..     971     997 ..     893    1097 .. 0.76
   3 !   18.5   0.0   1.5e-06    0.0025      54     159 ..    1936    2041 ..    1910    2117 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.4
                    TSEEEEEETCH..HHHHHHHHHCC....................EEEEES-..................----TTTS----TTHHHHHHTT-CCCC CS
  Abhydrolase_6  65 gpvvlvGHSlG..Galalaaapla..................lvvgvlldp...........pp.....talpagllaaalelllallallrllaw 124
                    ++v lvG + G       aaa +a                  ++ g l+++            +     +++ ++ + a+ +++  +  ++ +  w
     KKY24166.1 106 KDVRLVGLCTGllS----AAAVAAsnslvelvpraietvriaFRTGSLVATtaerfggdvgkDSwssivVSDFTSAQKAIDRFHNDREIPFGSRLW 197
                    55556666666331....222222233344444445555544444455555222222222220012222222333344444444444444444444 PP

                    HCCH CS
  Abhydrolase_6 125 lsre 128
                     s+ 
     KKY24166.1 198 ISAT 201
                    4333 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.024
                    ....TTSEEEEEETCH..HHHHHHHHHCC CS
  Abhydrolase_6  62 a..gggpvvlvGHSlG..Galalaaapla 86 
                    +  g +p v++GHSlG  +  al aa ++
     KKY24166.1 971 SswGVKPSVVIGHSLGeyA--ALNAAGVL 997
                    36677899********663..33322233 PP

  == domain 3  score: 18.5 bits;  conditional E-value: 1.5e-06
                     HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC.................EE.EEES-..----TTTS----TTHHHHHH..TT-C.....CCC CS
  Abhydrolase_6   54 aalldelaagggpvvlvGHSlGGalalaaapla...............lvvg.vlldppptalpagllaaalelllalla..llrl.....law 124 
                     +++l++ +  +gp +l G+S GG++a +   ++                v++ vlld+    +p++l + +++l++ +    ll +     ++w
     KKY24166.1 1936 EEVLRRQP--TGPYYLGGWSAGGVVAYE---VCrqldemnrinpsgnyTVAKlVLLDS---PCPIRLEPLPARLHHFFDEigLLGDgkgntPGW 2021
                     44455553..6777**************...55555***********866779*****...999999444444444333311222223333344 PP

                     HCCHS-HSCCCCHHHCCCCHCHCCCGHHHHCCHHC CS
  Abhydrolase_6  125 lsreplprlfladedadaawrarlarlaallaglg 159 
                     l                +++ +   +l+a+ + l 
     KKY24166.1 2022 L----------L-----PHFEYSIKALSAYKPELK 2041
                     4..........3.....333333333333333333 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.2e-06      0.01      75     118 ..     526     569 ..     519     581 .. 0.91
   2 ?   -2.0   0.0       1.1   1.8e+03      28      59 ..     648     680 ..     639     686 .. 0.79
   3 ?   -3.8   0.1       3.9   6.4e+03     182     208 ..    1587    1613 ..    1574    1622 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.2e-06
                 TSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS CS
  Thiolase_N  75 evpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsna 118
                 + p+  v+ +csS+++a++ a+ s++age+d +  gG+  ++n 
  KKY24166.1 526 SGPSFSVDTACSSSFAALNVAITSLRAGECDTAFSGGANVLTNP 569
                 668899*******************************9999875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHTS-GGGCCEEEE.EHSSCTTST CS
  Thiolase_N  28 aealkallekagvdpeevdeviv.Gnvlqageg 59 
                 a + +++l+++gvdp e+++v + G+  qag+g
  KKY24166.1 648 AFLFSKVLTETGVDPREISYVEMhGTGTQAGDG 680
                 677899**************9763666666666 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 3.9
                  HHHHHHHHTTTTTTTBE-EEEEESSSE CS
  Thiolase_N  182 qkaaaaqkagkFkdeivPvkvkgkkgk 208 
                    a++a+++ + ++++ Pv++ + ++k
  KKY24166.1 1587 PSASKAKSQPQHAKKVAPVSIAEASNK 1613
                  568899999999999****99988766 PP

>> Egg_lysin  Egg lysin (Sperm-lysin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00019      0.32      39      86 ..    1400    1447 ..    1363    1464 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00019
                  HHHHHHHHHHHHCHHHHHHHHHHHHHCCTS--SHHHHHHHHHHHHHHC CS
   Egg_lysin   39 tlrfvnrrrmqtlwqnYaewvskkirkLgrkpnkkdyrrlGaeiGrri 86  
                     f n     + wq  a +++ ++++L++k  + d+ ++G+++++++
  KKY24166.1 1400 VVLFENAANWTAQWQRTAFLIKDRMKMLKKKMEEGDADKIGRKMAYKL 1447
                  5678899999999*******************************9943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.22u 0.37s 00:00:01.59 Elapsed: 00:00:00.60
# Mc/sec: 10723.09
//
Query:       KKY24167.1  [L=746]
Description: putative wd domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-43  147.7   1.2    3.9e-43  147.7   1.2    2.2  2  Striatin  Striatin family
      2e-13   50.6  11.9      0.037   14.9   0.2    6.8  6  WD40      WD domain, G-beta repeat
     0.0028   16.6   3.3     0.0043   16.0   3.3    1.2  1  CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) l


Domain annotation for each model (and alignments):
>> Striatin  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.7   1.2   6.6e-47   3.9e-43       1     153 [.      29     168 ..      29     170 .. 0.76
   2 ?    0.3   0.3      0.15   9.2e+02      57      94 ..     195     237 ..     193     316 .. 0.60

  Alignments for each domain:
  == domain 1  score: 147.7 bits;  conditional E-value: 6.6e-47
    Striatin   1 TLqgvlhFLQtEwhrherdRneweiEraEmkarIakLegerrgaenlkkdlvrrikmLEyalkqerakylklkegtsaakenkkkekeeeeaeeeekse 99 
                 TLqgv++FLQtEwhrherdRn+weiEraEmk+rI++Leg+ r+++++++++ +++k+LE al++er+k ++l +g +       ++  +e a+e     
  KKY24167.1  29 TLQGVMRFLQTEWHRHERDRNAWEIERAEMKSRIGRLEGDLRTSKKTNDSVSKYVKILEIALRKEREKTKSLANGEKVD----LQADPKELAKEA---- 119
                 9*******************************************************************55543333333....222222222111.... PP

    Striatin 100 eeskskekksakeslkkseaeeesesekrdeksrkksrqlLkqclqEityllti 153
                    ks +++sa+ ++ +   ++      +++++r+ks+++L +c +E+ty++ +
  KKY24167.1 120 --LKSLPQTSASLEIGP---DDAGPLGVQQDTQRDKSKNYLAKCSSEVTYHVLP 168
                 ..122233333333333...34556778899*******************9865 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.15
    Striatin  57 mLEyalkqerakylkl.....kegtsaakenkkkekeeeeaee 94 
                  LE a  q+r+k++ +     +++ s ++ +  +++e   +++
  KKY24167.1 195 SLEEAYAQQRQKHQPVnniaaQRDLSLSSGTMVEPPEPLFEAS 237
                 6999999999995544666653444444433333333333222 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0    0.0001      0.63       7      37 ..     401     436 ..     393     437 .. 0.75
   2 !   14.6   0.2     8e-06     0.048       6      37 ..     461     505 ..     456     506 .. 0.75
   3 !   14.9   0.2   6.2e-06     0.037       4      37 ..     513     564 ..     511     564 .. 0.88
   4 ?    3.4   0.0     0.027   1.6e+02      13      38 .]     629     655 ..     615     655 .. 0.79
   5 ?   -1.0   0.1      0.65   3.9e+03       6      34 ..     670     693 ..     668     695 .. 0.65
   6 !    8.1   0.0   0.00089       5.3       9      38 .]     714     736 ..     706     736 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0001
                 EESS.SSEEEEEEETTSSE..........EEEEETTSEEEEE CS
        WD40   7 ltGH.ssvtslafspdgaw..........lasGsdDgtvriW 37 
                 l+GH + v+s+       +          +a+++dDgt++ W
  KKY24167.1 401 LRGHlDVVRSV------IFtgggtpaepeIATCGDDGTIKRW 436
                 89**5558***......445555556666999*******988 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 8e-06
                 EEESS.SSEEEEE.......EETTSSE.....EEEEETTSEEEEE CS
        WD40   6 tltGH.ssvtsla.......fspdgaw.....lasGsdDgtvriW 37 
                 t +GH + vt+la       fs  g+      ++sG+ D tv++W
  KKY24167.1 461 THRGHvGAVTALAsapasqnFSNGGRAigdgwIFSGGQDATVKVW 505
                 45799888*****6666665444444488888899********** PP

  == domain 3  score: 14.9 bits;  conditional E-value: 6.2e-06
                 EEEEESS.SSEEEEE.................EETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGH.ssvtsla.................fspdgawlasGsdDgtvriW 37 
                   +l+GH + v++l+                   pd  +las++ Dg + iW
  KKY24167.1 513 KASLDGHtDAVWALCvlpgssgsvlgdrcasyGGPDRILLASAGADGRILIW 564
                 56899**666*****999999999999999999999999**9999******* PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.027
                 EEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtsla.fspdgawlasGsdDgtvriWd 38 
                  t+++  sp+g  ++ +  D ++ i+d
  KKY24167.1 629 PTCISpLSPHGENFVVSYNDTSILIYD 655
                 5899998999999988999******98 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.65
                 EEESS..SSEEEEEEETTSSEEEEE.ETTSEE CS
        WD40   6 tltGH..ssvtslafspdgawlasG.sdDgtv 34 
                 t++G   ++v+s+        +as  + Dg +
  KKY24167.1 670 TYDGTsaTGVNSV--------VASTvGFDGAL 693
                 5777744459999........98644448765 PP

  == domain 6  score: 8.1 bits;  conditional E-value: 0.00089
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 G  ++v ++        ++sG++D+ vr++d
  KKY24167.1 714 GSsGGVEGV--------IISGHEDRYVRFFD 736
                 443349999........***********998 PP

>> CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   3.3   7.2e-07    0.0043      59     134 ..      39     115 ..      30     132 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.2e-07
    CALCOCO1  59 kekeeykrdreeldrerkelesrveelkeelkesrekveeleekqkelerlseelaeeksalle.akeesearirEL 134
                  e ++++rdr++++ er+e++sr+ +l+ +l++s++  +++++  k le +  +  e+ + l++ +k + +a  +EL
  KKY24167.1  39 TEWHRHERDRNAWEIERAEMKSRIGRLEGDLRTSKKTNDSVSKYVKILEIALRKEREKTKSLANgEKVDLQADPKEL 115
                 567899*****************************999988877776665544444444444331334444445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 4754.35
//
Query:       KKY24168.1  [L=849]
Description: hypothetical protein UCRPC4_g02534 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-18   66.5   0.0    3.3e-18   65.8   0.0    1.3  1  MINDY_DUB  MINDY deubiquitinase


Domain annotation for each model (and alignments):
>> MINDY_DUB  MINDY deubiquitinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.0   1.8e-22   3.3e-18       1     116 [.     385     534 ..     385     535 .. 0.90

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 1.8e-22
   MINDY_DUB   1 vNvLlLsgk.......iellpedreevsleeLlelladilldnnplnqeen...lsellelLpklqtgldvnprF........................ 65 
                 vN+L+Ls          + l  +re++sl+ ++e l+d+l++  + n+e +   +++l ++L +l+tgl+ nprF                        
  KKY24168.1 385 VNALILSSIddsqsalGKAL-ASREHISLGLIIESLMDELTSDGR-NTEIElpdVDDLNRFLLTLHTGLNANPRFatsappanlmdarnsvlhlptpdt 481
                 68899988778888864443.89******************9999.445445779*******************************************9 PP

   MINDY_DUB  66 .dgidsFektselalFdllnipLvHGwlvdp.qdaeaaealsaksYneavell 116
                  +++  Fe t +++l+ ++nip+vHGwl+ p ++a+ a ++sa++Y++a++ l
  KKY24168.1 482 eSEMGRFEMTGDIRLYGAFNIPVVHGWLPPPmHSATSAFSRSAQTYEDAQTIL 534
                 97778**************************99999999**********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (849 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.48
# Mc/sec: 5347.75
//
Query:       KKY24169.1  [L=198]
Description: putative mitochondrial import inner membrane translocase subunit tim17 family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-35  119.6   4.9    1.1e-34  119.1   4.9    1.2  1  Tim17     Tim17/Tim22/Tim23/Pmp24 family
     0.0077   16.2   1.2      0.021   14.8   0.0    2.1  2  DUF543    Domain of unknown function (DUF543)
  ------ inclusion threshold ------
       0.11   12.5   0.0       0.29   11.2   0.0    1.7  1  HTH_6     Helix-turn-helix domain, rpiR family
        1.8    9.0  12.7        2.3    8.7   3.6    3.5  4  Romo1     Reactive mitochondrial oxygen species modulator 1


Domain annotation for each model (and alignments):
>> Tim17  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   4.9   2.4e-38   1.1e-34       1     111 []      43     185 ..      43     185 .. 0.98

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 2.4e-38
       Tim17   1 cvyktglsgvlGallGavfglvkgsrradtp..............................apskerlreglrsvgkrgpslGknfgvvgglysgieca 69 
                 c+ k++++g +G++lG++fgl+++s+r+dtp                              +p++++l+ glr++gk+++s++knfg+vg++ysg+ec+
  KKY24169.1  43 CIAKSIMAGGMGFVLGGAFGLFMASMRYDTPlsspinpanpnlptgavpgvgaaatqtisdLPLRQQLKIGLRDMGKSSFSSAKNFGTVGAIYSGTECC 141
                 899************************************************************************************************ PP

       Tim17  70 leklRgkediwnsvaAGaltGall.r.agpqaaavgaiggaafs 111
                 +e+lR+k+d  n+ +AG+ltGa+l r +g+++a  +++g+aafs
  KKY24169.1 142 IEGLRAKNDLDNAGYAGFLTGAILaRkTGVKGAGLAGAGFAAFS 185
                 *********99************9636****************7 PP

>> DUF543  Domain of unknown function (DUF543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.7e-06     0.021      12      50 ..      31      69 ..      20      73 .. 0.82
   2 ?   -1.6   1.3      0.61   2.7e+03      38      52 ..     157     171 ..     154     185 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.7e-06
      DUF543 12 psesdldekwDaclsnllvkvglgllvGvvasvllfrrR 50
                ++ + +++ ++ c++++++  g+g++ G +++++++ +R
  KKY24169.1 31 KAVKYIQAGMESCIAKSIMAGGMGFVLGGAFGLFMASMR 69
                33477889999**********************998766 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.61
      DUF543  38 vGvvasvllfrrRaa 52 
                 +G +++ +l+r+  +
  KKY24169.1 157 AGFLTGAILARKTGV 171
                 688889999884333 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.4e-05      0.29      11      38 ..      22      49 ..      19      51 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.4e-05
                -----HHHHHHHHHHHH-S---TT--HH CS
       HTH_6 11 kekltksekkiaeyilaspdkaielsik 38
                 +++++se k ++yi+a  + +i++si 
  KKY24169.1 22 PNGMSESEMKAVKYIQAGMESCIAKSIM 49
                5789**********************95 PP

>> Romo1  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.6    0.0005       2.3       1      26 [.      42      67 ..      42      71 .. 0.89
   2 ?    4.2   0.1     0.012        56      38      57 ..     112     131 ..      88     140 .. 0.80
   3 ?    1.5   0.1     0.086   3.8e+02      18      44 ..     129     155 ..     128     166 .. 0.79
   4 ?   -0.0   0.2      0.26   1.2e+03      20      39 ..     157     176 ..     154     190 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0005
       Romo1  1 scldkikmGalmGaaVGlaiGllfGt 26
                sc+ k  m   mG+++G+a+Gl++ +
  KKY24169.1 42 SCIAKSIMAGGMGFVLGGAFGLFMAS 67
                799999***************98765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.012
       Romo1  38 gllrtlgksmlgsaatFGfF 57 
                   lr +gks  +sa  FG+ 
  KKY24169.1 112 IGLRDMGKSSFSSAKNFGTV 131
                 55899*************75 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.086
       Romo1  18 laiGllfGtfsalryglrgrgllrtlg 44 
                 +++G+++ ++++   glr ++ l + g
  KKY24169.1 129 GTVGAIYSGTECCIEGLRAKNDLDNAG 155
                 578999999999999999887766655 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.26
       Romo1  20 iGllfGtfsalryglrgrgl 39 
                 +G+l+G + a + g+ g gl
  KKY24169.1 157 AGFLTGAILARKTGVKGAGL 176
                 68888888887777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1476.32
//
Query:       KKY24170.1  [L=459]
Description: putative elongation factor 1-alpha [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-54  184.8   0.0    1.8e-54  184.2   0.0    1.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    6.4e-42  142.4   0.0    1.5e-41  141.2   0.0    1.6  1  GTP_EFTU_D3  Elongation factor Tu C-terminal domain
    3.4e-14   53.0   2.1    3.4e-14   53.0   2.1    2.0  2  GTP_EFTU_D2  Elongation factor Tu domain 2
     0.0013   18.8   0.1      0.033   14.2   0.1    2.5  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
       0.39   10.7   4.1       0.21   11.5   1.1    2.1  2  GTP_EFTU_D4  Elongation factor Tu domain 4


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.2   0.0   5.1e-58   1.8e-54       1     190 [.       5     232 ..       5     236 .. 0.93

  Alignments for each domain:
  == domain 1  score: 184.2 bits;  conditional E-value: 5.1e-58
                 TCEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH.HHHST............HCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHH CS
    GTP_EFTU   1 krirnigiighvDhGKtTLtdrLlyktgaiskkgeka.eeerv............lDtlkeErergiTiksaaisleketkkylinliDtPGHvdFske 86 
                 k+++n+++ighvD+GK+T+t++L+yk+g i+k++ ++ e+e++            lD+lk+ErergiTi++a +++e  t ky +++iD+PGH+dF+k+
  KKY24170.1   5 KTHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKfEKEAAelgkgsfkyawvLDKLKAERERGITIDIALWKFE--TPKYFVTVIDAPGHRDFIKN 101
                 579*********************************964344478999*****************************..******************** PP

                 HHHHHHT-SEEEEEEETTTB.......STHHHHHHHHHHHHTTTE.EEEEEESCGST...HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEB CS
    GTP_EFTU  87 virglrvlDgavlvvdaveG.......vepqteevlrlalkegvp.iivfiNKmDrl...kaelkeiveevkqklsrkeeklekygekgekevpvvfgS 174
                 +i+g++++D+a+l+++a  G          qt+e++ la ++gv+ +iv+iNKmD +   +++++ei++e + ++      ++k+g++ + +vp+v++S
  KKY24170.1 102 MITGTSQADCAILIIAAGTGefeagisKDGQTREHALLAFTLGVRqLIVAINKMDTTkwsEDRYNEIIKETS-TF------IKKVGYNPK-TVPFVPIS 192
                 **************************99*****************************999999******999.88......9******96.******** PP

                 TTTTBTHH........................HHHHHHHH CS
    GTP_EFTU 175 alkgegvk........................tllealve 190
                 +++g+++                         tllea++ 
  KKY24170.1 193 GFNGDNMIeassncpwykgweketkagkssgkTLLEAIDA 232
                 *****98877788888888888888888888788888775 PP

>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.2   0.0   4.1e-45   1.5e-41       2     111 ..     332     439 ..     331     440 .. 0.98

  Alignments for each domain:
  == domain 1  score: 141.2 bits;  conditional E-value: 4.1e-45
                  -EEECCEEEEEEESSS..SS-BSTT-EEEEESSS-EEEEEEEEEEECCSSTTSB-BSS-SSCCSTT-CEEEEEEECCEEEE--TTTHCCCCEEEEECT CS
  GTP_EFTU_D3   2 ikphtkfeAqvyilekerhtpitagYrpvlyirtadvtgkvveLlskldkktekvsekkpefvkpGdnvivevelikpialekgseypqlGrFaiReg 99 
                   k +++f+Aqv++l++  ++++ agY+pvl+++ta++++k+ eLl+k+d++t+k+ e++p+f+k+Gd++iv++ ++kp+++e ++eyp+lGrFa+R++
   KKY24170.1 332 PKGCDSFNAQVIVLNH--PGQVGAGYAPVLDCHTAHIACKFSELLEKIDRRTGKSIENNPKFIKSGDAAIVKMIPSKPMCVEAFTEYPPLGRFAVRDM 427
                  67899***********..******************************************************************************** PP

                  TCEEEEEEEEEE CS
  GTP_EFTU_D3 100 grTvaaGvvtei 111
                  ++Tva+Gv++++
   KKY24170.1 428 RQTVAVGVIKSV 439
                  **********98 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.1   1.1e+04      19      36 ..      10      25 ..       8      34 .. 0.74
   2 !   53.0   2.1   9.5e-18   3.4e-14       1      72 [.     258     323 ..     258     325 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.1
                 EEEEC.TCTTSEEEEEEEE CS
  GTP_EFTU_D2 19 vrilg.ndtskkeivtris 36
                 v+++g +d++k+   t+ +
   KKY24170.1 10 VVVIGhVDSGKS---TTTG 25
                 677787888888...6654 PP

  == domain 2  score: 53.0 bits;  conditional E-value: 9.5e-18
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdt 72 
                  Gtv  grv++G++k G+ v + + n t      t+++s+e++he+++e v+g+n+G++v+ + +++ i++G++
   KKY24170.1 258 GTVPVGRVETGIIKAGMVVTFAPaNVT------TEVKSVEMHHEQLTEGVPGDNVGFNVKNVSVKE-IRRGNV 323
                  99*******************998877......*********************************.****98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   9.3e-06     0.033       2      86 ..      10     119 ..       9     154 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 9.3e-06
                 EEEEESTTSSHHHHHHHHH...............T................STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinalt...............g................ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgka 69 
                 v+++G+  +GKSt    l+               +                +k +++++ g T+di   ++++ +  ++++D pG  +    +  +++ 
  KKY24170.1  10 VVVIGHVDSGKSTTTGHLIykcggidkrtiekfeKeaaelgkgsfkyawvlDKLKAERERGITIDIALWKFETPKYFVTVIDAPG--H----RDFIKNM 102
                 89999999999999999996666665555555540455555566666655568899999999999999999977888********..3....2235555 PP

                 HHHHHCTSEEEEEEETT CS
    MMR_HSR1  70 flaleeadlillvvdas 86 
                 +    +ad ++l++ a 
  KKY24170.1 103 ITGTSQADCAILIIAAG 119
                 55566678888888755 PP

>> GTP_EFTU_D4  Elongation factor Tu domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.1     6e-05      0.21      21      82 ..     262     321 ..     257     324 .. 0.88
   2 ?   -2.7   0.1       1.6   5.9e+03      43      56 ..     432     445 ..     428     454 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6e-05
                  EEEEEEEEEEETT-EEEETTE.EEEEEEEEEETTEEESEEETT-EEEEEEESS-TTTS--TT CS
  GTP_EFTU_D4  21 vGvevlgGvikpgvklikedGrevGeilqiqdkgkkleeakaGqevaisiegkivGrqikeg 82 
                  vG +v +G+ik+g+ +  +  +   e+++++ ++++l+e   G++v+  +++  v ++i  g
   KKY24170.1 262 VG-RVETGIIKAGMVVTFAPANVTTEVKSVEMHHEQLTEGVPGDNVGFNVKNVSV-KEIRRG 321
                  88.9**************999999************************9997543.555555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.6
                  EEEEEEEEEETTEE CS
  GTP_EFTU_D4  43 evGeilqiqdkgkk 56 
                   vG+i+++++++k 
   KKY24170.1 432 AVGVIKSVEKTDKG 445
                  57888888877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 2758.27
//
Query:       KKY24171.1  [L=116]
Description: putative rna polymerase iii subunit c11 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-18   64.4   1.4    6.1e-18   64.4   1.4    3.0  3  TFIIS_C         Transcription factor S-II (TFIIS)
    0.00022   21.1   8.0     0.0025   17.7   5.1    3.1  2  RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
     0.0036   17.2   5.5      0.065   13.2   0.4    2.4  2  Zn_Tnp_IS1595   Transposase zinc-ribbon domain
  ------ inclusion threshold ------
       0.01   16.0   7.5        1.7    8.9   0.1    2.7  2  IBR             IBR domain, a half RING-finger domain
      0.019   15.5   1.4       0.12   12.9   0.1    2.6  2  zf-CHY          CHY zinc finger
      0.063   13.5   4.0        1.7    8.9   0.1    2.6  2  C1_4            TFIIH C1-like domain
       0.11   12.4   2.0       0.13   12.2   0.1    1.9  2  C1_1            Phorbol esters/diacylglycerol binding domain 
       0.11   12.6   0.1       0.11   12.6   0.1    1.8  2  DiS_P_DiS       Bacterial Peptidase A24 N-terminal domain
          2    9.0  14.6        2.2    8.8   0.3    3.8  4  zf-H2C2_2       Zinc-finger double domain
        6.3    6.4   7.7        3.7    7.2   0.0    3.4  4  Sgf11           Sgf11 (transcriptional regulation protein)


Domain annotation for each model (and alignments):
>> TFIIS_C  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.057     1e+02       2       9 ..       5      12 ..       4      17 .. 0.79
   2 ?    1.3   0.2      0.17   3.1e+02      29      38 ..      31      40 ..      29      41 .. 0.81
   3 !   64.4   1.4   3.4e-21   6.1e-18       2      39 .]      75     114 ..      74     114 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.057
     TFIIS_C  2 kCpkCgsr 9 
                 Cp+C++ 
  KKY24171.1  5 FCPNCSNA 12
                69999985 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.17
     TFIIS_C 29 ykCtkCghrW 38
                ++C +C +++
  KKY24171.1 31 FECRTCPYQF 40
                7899998887 PP

  == domain 3  score: 64.4 bits;  conditional E-value: 3.4e-21
     TFIIS_C   2 kCpk..CgsreayffqlQtRsaDEpmtvfykCtkCghrWr 39 
                  Cp+  C+srea f+qlQ+RsaDEp+t fy+CtkC + Wr
  KKY24171.1  75 ACPNptCDSREAAFYQLQIRSADEPPTSFYTCTKCLKAWR 114
                 699888*********************************8 PP

>> RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   5.1   1.4e-06    0.0025       3      31 ..       5      40 ..       4      44 .. 0.79
   2 ?   -0.4   0.0      0.62   1.1e+03      22      27 ..     104     109 ..      91     110 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.4e-06
                    BESTTTSBEEEEECS......CCCE.EEESSSS-EE CS
  RNA_POL_M_15KD  3 FCpkCgNlLlpkedk......egkn.feCrqCgYee 31
                    FCp C N L +++        +g+n feCr+C+Y +
      KKY24171.1  5 FCPNCSNALTIARLAptlefpLGQNaFECRTCPYQF 40
                    ********99986532333338999*********86 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.62
                     EEESSS CS
  RNA_POL_M_15KD  22 feCrqC 27 
                     + C +C
      KKY24171.1 104 YTCTKC 109
                     778888 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.4   3.6e-05     0.065      21      46 .]       6      39 ..       2      39 .. 0.87
   2 !    6.3   0.7    0.0053       9.4      22      44 ..      79     110 ..      70     112 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.6e-05
  Zn_Tnp_IS1595 21 CPhCgsr.kayrikt.......rglfqCkeCrkq 46
                   CP+C ++ ++ r++           f+C+ C +q
     KKY24171.1  6 CPNCSNAlTIARLAPtlefplgQNAFECRTCPYQ 39
                   *****998888888899**************987 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0053
  Zn_Tnp_IS1595  22 PhCgsrkayrikt.........rglfqCkeCr 44 
                    P C sr+a +++             + C +C 
     KKY24171.1  79 PTCDSREAAFYQLqirsadeppTSFYTCTKCL 110
                    56****66666666699999999999***995 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00097       1.7      19      48 ..       4      40 ..       2      42 .. 0.70
   2 ?    8.7   2.9    0.0011         2      15      56 ..      70     113 ..      55     116 .] 0.57

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00097
         IBR 19 kwCprpdCeaii.........eksegcksvtCskCgfef 48
                + Cp  +C++++         e   g++  +C++C ++f
  KKY24171.1  4 TFCP--NCSNALtiarlaptlEFPLGQNAFECRTCPYQF 40
                57*9..***9995554444433333355599****9998 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0011
         IBR  15 dpnlkwCprpdCe..aii......eksegcksvtCskCgfefCfnCkkew 56 
                 +++ + Cp+p C+   ++      +    +++   +  +f +C++C+k+w
  KKY24171.1  70 SKTEIACPNPTCDsrEAAfyqlqiR----SAD--EPPTSFYTCTKCLKAW 113
                 566789******9542222333221....111..1224566666666666 PP

>> zf-CHY  CHY zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2       1.2   2.1e+03      68      74 ..       5      11 ..       1      12 [. 0.63
   2 ?   12.9   0.1   6.6e-05      0.12      10      72 ..      21     109 ..      15     112 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.2
      zf-CHY 68 fCpiCkl 74
                fCp+C++
  KKY24171.1  5 FCPNCSN 11
                5777764 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 6.6e-05
      zf-CHY  10 airapcCkklyaCreCH........eeledhelerlevkevlcllCeteq.ekavlCkk..Ckk....efaey...............fCpiC 72 
                 ++++p  +++++Cr+C            e+  + ++++++v+  +    q +++++C +  C++        y               +C++C
  KKY24171.1  21 TLEFPLGQNAFECRTCPyqfildkpY-YEKTVMAEKKIDDVMGATDLGSQsKTEIACPNptCDSreaaF---YqlqirsadepptsfyTCTKC 109
                 5789999*********9999996531.445556666666666555444442677889988897754440...344444444444444378888 PP

>> C1_4  TFIIH C1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00097       1.7       2      38 ..       6      43 ..       5      47 .. 0.85
   2 ?    5.5   0.4     0.011        20      17      33 ..      96     111 ..      80     114 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00097
        C1_4  2 CygCqkkfpklakkkkdee.ltssryrCekCkndFCiD 38
                C  C ++++ ++  ++ e  l +  ++C++C  +F +D
  KKY24171.1  6 CPNCSNALTIARLAPTLEFpLGQNAFECRTCPYQFILD 43
                888888888888887766568999***********998 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.011
        C1_4  17 kdeeltssryrCekCkn 33 
                 + +e  +s+y+C kC +
  KKY24171.1  96 A-DEPPTSFYTCTKCLK 111
                 3.456789*******76 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   7.2e-05      0.13      11      37 ..       3      39 ..       1      40 [. 0.91
   2 ?   -0.9   0.2      0.87   1.6e+03      29      34 ..     104     109 ..     100     113 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.2e-05
                --B-TTT-SB-.........-S.SSS-EEEETTT--E CS
        C1_1 11 ptfCkhCgefl.........wg.kekqglkCswCkll 37
                ptfC  C + l         ++ ++  ++ C++C + 
  KKY24171.1  3 PTFCPNCSNALtiarlaptlEFpLGQNAFECRTCPYQ 39
                8*******************666***********985 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.87
                 EEETTT CS
        C1_1  29 lkCswC 34 
                 ++C+ C
  KKY24171.1 104 YTCTKC 109
                 455555 PP

>> DiS_P_DiS  Bacterial Peptidase A24 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   6.2e-05      0.11      28      71 ..       4      49 ..       1      54 [. 0.82
   2 ?   -1.9   0.8         2   3.7e+03      29      29 ..     105     105 ..      68     114 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.2e-05
   DiS_P_DiS 28 SrCpkCghklkwleliPvlSylllrg..rCraCkakislryplvEl 71
                  Cp+C+++l++ +l P l + l +    Cr+C  +  l  p +E 
  KKY24171.1  4 TFCPNCSNALTIARLAPTLEFPLGQNafECRTCPYQFILDKPYYEK 49
                68*******************886542379*999998888888885 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2
   DiS_P_DiS  29 r 29 
                 +
  KKY24171.1 105 T 105
                 2 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2      0.49   8.8e+02      17      21 ..       6      10 ..       4      13 .. 0.85
   2 ?    8.8   0.3    0.0012       2.2      11      24 ..      27      40 ..      23      41 .. 0.90
   3 ?   -0.2   0.1      0.89   1.6e+03      12      21 ..      71      82 ..      69      84 .. 0.74
   4 ?    7.1   0.5    0.0045         8      12      23 ..     101     112 ..      96     112 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.49
   zf-H2C2_2 17 CplCd 21
                Cp C+
  KKY24171.1  6 CPNCS 10
                ****7 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0012
   zf-H2C2_2 11 gekpyeCplCdkaF 24
                g++ +eC  C++ F
  KKY24171.1 27 GQNAFECRTCPYQF 40
                7888********99 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.89
   zf-H2C2_2 12 ekpyeCp..lCd 21
                +++  Cp   Cd
  KKY24171.1 71 KTEIACPnpTCD 82
                677889977787 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0045
   zf-H2C2_2  12 ekpyeCplCdka 23 
                  ++y+C +C ka
  KKY24171.1 101 TSFYTCTKCLKA 112
                 457******996 PP

>> Sgf11  Sgf11 (transcriptional regulation protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.002       3.7       7      21 ..       6      20 ..       4      23 .. 0.88
   2 ?    0.5   0.2      0.26   4.6e+02       4      11 ..      30      37 ..      27      39 .. 0.82
   3 ?   -1.8   0.0       1.4   2.5e+03       3       9 ..      72      78 ..      70      78 .. 0.77
   4 ?    1.2   0.1      0.16   2.8e+02       3      11 ..     102     110 ..     100     112 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.002
                -TTTSSEEEGGGHHH CS
       Sgf11  7 CpnCgRqiaasRFAp 21
                CpnC+      R Ap
  KKY24171.1  6 CPNCSNALTIARLAP 20
                ******999999998 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.26
                EEE-TTTS CS
       Sgf11  4 yvtCpnCg 11
                 ++C  C 
  KKY24171.1 30 AFECRTCP 37
                699**995 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.4
                -EEE-TT CS
       Sgf11  3 eyvtCpn 9 
                + + Cpn
  KKY24171.1 72 TEIACPN 78
                6789*99 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.16
                 -EEE-TTTS CS
       Sgf11   3 eyvtCpnCg 11 
                  ++tC  C 
  KKY24171.1 102 SFYTCTKCL 110
                 579999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.38u 0.29s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 804.31
//
Query:       KKY24172.1  [L=175]
Description: putative ankyrin repeat protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-05   23.6   0.1       0.61   10.5   0.0    3.5  3  Ank_5     Ankyrin repeats (many copies)
     0.0056   17.1   0.0        1.7    9.5   0.0    3.1  3  Ank_3     Ankyrin repeat
  ------ inclusion threshold ------
      0.087   13.1   0.0       0.16   12.2   0.0    1.4  1  TcdB_N    TcdB toxin N-terminal helical domain


Domain annotation for each model (and alignments):
>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.047   2.8e+02      40      55 ..      43      58 ..      16      58 .. 0.75
   2 !    6.9   0.0    0.0014       8.2      11      27 ..      76      92 ..      71      99 .. 0.75
   3 !   10.5   0.0    0.0001      0.61      30      55 ..     102     127 ..     100     128 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.047
       Ank_5 40 adlnltdsrGltaldl 55
                  +nltds+G+ +l++
  KKY24172.1 43 FLNNLTDSMGNYLLHI 58
                4579999999888775 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0014
       Ank_5 11 rldgggntpLhvAakyg 27
                 ++++ +tpLhv++ky 
  KKY24172.1 76 LTRRDAETPLHVSVKYA 92
                5667778********75 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.0001
       Ank_5  30 dvvrlLlargadlnltdsrGltaldl 55 
                  +v++ ++ g+d++++d++G+ + dl
  KKY24172.1 102 AMVKMAIDAGCDPRVKDKHGRRPRDL 127
                 69******************999887 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.019   1.1e+02       6      23 ..      13      30 ..      13      34 .. 0.86
   2 ?   -1.0   0.0      0.74   4.4e+03       2       8 ..      52      58 ..      51      68 .. 0.84
   3 !    9.5   0.0   0.00028       1.7       3      30 ..      82     115 ..      80     116 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.019
       Ank_3  6 LhlAarsgnleivkfLle 23
                L +A+r +n+e+++  l+
  KKY24172.1 13 LLEACRRDNTELLQEVLD 30
                789********9998776 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.74
       Ank_3  2 GetpLhl 8 
                G+++Lh+
  KKY24172.1 52 GNYLLHI 58
                8889996 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00028
       Ank_3   3 etpLhlAarsgnl.......eivkfLlenkgadvn 30 
                 etpLh+ ++++n        ++vk+ ++  g+d++
  KKY24172.1  82 ETPLHVSVKYANErnvelgaAMVKMAID-AGCDPR 115
                 7************888666447******.8**996 PP

>> TcdB_N  TcdB toxin N-terminal helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.7e-05      0.16       9      40 ..      24      55 ..      22      57 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.7e-05
                HHHHHHHTTTTS-HHHHHHHHHHHHHHHHHHH CS
      TcdB_N  9 nleeklnklseeqskkkyellkklkkeidnYn 40
                 l e l ++s+++++++ e l++l ++++nY+
  KKY24172.1 24 LLQEVLDGMSSKSKEQVAEFLNNLTDSMGNYL 55
                5677799************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1242.56
//
Query:       KKY24173.1  [L=753]
Description: putative uba ts-n domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-07   31.4   0.0        0.7    9.8   0.0    3.7  3  TPR_1     Tetratricopeptide repeat
    1.6e-06   27.7   0.0       0.46   10.7   0.1    3.8  4  TPR_2     Tetratricopeptide repeat
      2e-05   24.4   0.0      4e-05   23.4   0.0    1.5  1  UBA       UBA/TS-N domain
     0.0056   16.9   0.0       0.14   12.5   0.0    2.8  2  TPR_12    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.065   13.4   0.0       0.17   12.1   0.0    1.7  1  DnaJ      DnaJ domain
      0.073   12.8   0.0        9.3    6.0   0.0    2.7  2  TPR_11    TPR repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00036       1.1       8      32 ..     461     485 ..     460     486 .. 0.91
   2 !    7.8   0.0     0.001       3.1       3      29 ..     494     520 ..     492     522 .. 0.93
   3 !    9.8   0.0   0.00024       0.7       2      28 ..     549     575 ..     548     576 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00036
                 HHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   8 GnayfklgkydeAleyyekALelnP 32 
                 G  yfk g++  A + y  AL+  P
  KKY24173.1 461 GTSYFKRGDFSAAHASYTSALTQIP 485
                 789******************8776 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.001
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALe 29 
                 +l n++++ +k g+++ Al + + AL+
  KKY24173.1 494 ILTNRALTALKVGEPKTALTDANNALS 520
                 689**********************97 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00024
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekAL 28 
                 kal +++ a+ +l+k+ eAl   ++A+
  KKY24173.1 549 KALMRKAEALEQLEKWSEALVVWREAI 575
                 79*******************999998 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       5.8   1.7e+04      18      25 ..     280     287 ..     279     288 .. 0.75
   2 !   10.0   0.0   0.00027      0.81       5      32 ..     458     485 ..     456     487 .. 0.88
   3 ?    2.1   0.0     0.088   2.6e+02       4      29 ..     495     520 ..     493     522 .. 0.91
   4 !   10.7   0.1   0.00015      0.46       2      28 ..     549     575 ..     548     576 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.8
       TPR_2  18 eeAleafe 25 
                 e+A+ea+e
  KKY24173.1 280 EKAREALE 287
                 78888877 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00027
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldP 32 
                  + G +y+k+gd+  A++ +  Al   P
  KKY24173.1 458 RETGTSYFKRGDFSAAHASYTSALTQIP 485
                 56799******************98777 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.088
       TPR_2   4 lynlGlayyklgdyeeAleafekAle 29 
                 l n++l ++k g+++ Al + + Al+
  KKY24173.1 495 LTNRALTALKVGEPKTALTDANNALS 520
                 679******************99996 PP

  == domain 4  score: 10.7 bits;  conditional E-value: 0.00015
       TPR_2   2 ealynlGlayyklgdyeeAleafekAl 28 
                 +al++ ++a+++l ++ eAl  +++A+
  KKY24173.1 549 KALMRKAEALEQLEKWSEALVVWREAI 575
                 699***********************8 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.3e-08     4e-05       3      28 ..     266     291 ..     264     302 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.3e-08
                 HHHHHHHHHTTS-HHHHHHHHHHTTT CS
         UBA   3 eeaiqrLveMGFdreevveALratgn 28 
                  +a+++LveMGF +e ++eAL+at  
  KKY24173.1 266 DKAVAELVEMGFAPEKAREALEATES 291
                 679********************965 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   4.7e-05      0.14       9      72 ..     460     519 ..     452     528 .. 0.89
   2 ?    1.0   0.1      0.18   5.3e+02       5      29 ..     550     574 ..     546     596 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.7e-05
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                  ++ ++++g++  A + +  al ++   + ++hp t+ +l n + + ++ g+++ Al   + al
  KKY24173.1 460 TGTSYFKRGDFSAAHASYTSALTQI---P-TTHPITIVILTNRALTALKVGEPKTALTDANNAL 519
                 6899*********************...4.78************************98776666 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.18
      TPR_12   5 alnnlaavlrrlgrydeAlelleka 29 
                 al + a++l +l+++ eAl   ++a
  KKY24173.1 550 ALMRKAEALEQLEKWSEALVVWREA 574
                 5556777777777777777655555 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.6e-05      0.17      15      55 ..     703     749 ..     695     752 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.6e-05
                 HHHHHHHHHHHHHHSTTTSCCHHHHHH......HHHHHHHHHHHHTS CS
        DnaJ  15 deIkkaYrklalkyHPDknpkdpeaee......kFkeineAyevLsd 55 
                 +++k +Y k + k+HPDk p   + e+       F  +neA++  ++
  KKY24173.1 703 NKVKIQYMKGISKVHPDKIPVTATTEQrmiagaVFSALNEAWDKFKK 749
                 57999************984444333333444499999999986655 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0031       9.3       1      22 [.     461     482 ..     461     487 .. 0.88
   2 ?    3.8   0.0     0.015        46       6      22 ..     560     576 ..     555     576 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0031
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G  y+++G++ +A ++Y  Al 
  KKY24173.1 461 GTSYFKRGDFSAAHASYTSALT 482
                 567**************99986 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.015
      TPR_11   6 eqGkyeeAieaYkkAlk 22 
                 ++ k+ eA+ ++++A++
  KKY24173.1 560 QLEKWSEALVVWREAID 576
                 7899***********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       841  (0.0469072); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.52
# Mc/sec: 4365.87
//
Query:       KKY24174.1  [L=531]
Description: putative trna methyltransferase subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-54  184.3   7.5    6.7e-33  114.4   0.0    3.9  3  GCD14       tRNA methyltransferase complex GCD14 subunit


Domain annotation for each model (and alignments):
>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.0   9.8e-24   1.8e-19       1      62 [.     112     173 ..     112     176 .. 0.98
   2 !  114.4   0.0   3.8e-37   6.7e-33      65     246 ..     200     445 ..     193     446 .. 0.67
   3 ?   -3.3   3.1      0.33   5.9e+03     189     216 ..     474     501 ..     453     522 .. 0.48

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 9.8e-24
       GCD14   1 gfvyvlaptPeLWtlaLphrtqilytaDisliimkLelkpGsvvvesGtGsgslshaiartv 62 
                 gf++++ ptPe Wt +Lphrtq++yt+D s i ++++ +pG v +e+G Gsgs++ha +r+v
  KKY24174.1 112 GFLHIFPPTPENWTYSLPHRTQVVYTPDYSYILHRIRARPGGVLIEAGSGSGSFTHASIRAV 173
                 89**********************************************************98 PP

  == domain 2  score: 114.4 bits;  conditional E-value: 3.8e-37
       GCD14  65 tGhlftfefheqraekareefrehelsqlvtvthrDvckeGf..deevsg...........kvDavfLDlPaPweaiphaaka..lk.......keggr 141
                  Gh+ft+e+h++r +k ree  eh+ls+lvt thrDv ++Gf  d e sg            ++a+fLDlPaPw+a+ph++++  ++       ++   
  KKY24174.1 200 YGHVFTYEYHAERFRKVREETIEHGLSNLVTPTHRDVYNDGFllDPEASGddsiettrtspAANAIFLDLPAPWKALPHLTRQstVHlpspldpTSTVH 298
                 59****************************************8765543311222222222689***************97642234222222234568 PP

       GCD14 142 lCsfsPCieqvqrtceaLrelgfteietlevllrtyevrkskleeidl...aekrleenerkriekakrrka..........skdakvedkssks.... 223
                 +C+fsPCieq qrt+  Lr  g+++ie++e+ +++ +vr++      +   +++ l  + ++++e+ k+++           ++d+k    +++     
  KKY24174.1 299 ICTFSPCIEQAQRTVSSLRRYGWIDIEMVEMSQNRIDVRREYTGFEFEgirGANGLPATVEDAVERLKQIEErgklwrgygtKNDDKDPVDEDEEvtkl 397
                 **************************************9875433322112222222222333444444443444788777633333322222222444 PP

       GCD14 224 ......stevllkPv..........................selkghtgyLtfat 246
                               +                           elk+ht+yL+fa 
  KKY24174.1 398 reslrvP-------TeserrqvlkirektlykqgksihrsePELKTHTSYLVFAI 445
                 4444440.......2555555566666666666677777668***********96 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.33
       GCD14 189 laekrleenerkriekakrrkaskdakv 216
                  +++++ ++++++  +a++r+ ++++++
  KKY24174.1 474 QGKQQKGKSKKQAKREARQRREERKEQA 501
                 2333333333332222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1768  (0.0986112); expected 358.6 (0.02)
Passed bias filter:                      761  (0.0424452); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.49
# Mc/sec: 3261.69
//
Query:       KKY24175.1  [L=807]
Description: putative cysteinyl-trna synthetase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.6e-113  379.1   0.0   2.6e-113  378.4   0.0    1.3  1  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
    1.7e-05   23.7   0.1        0.1   11.3   0.1    2.6  2  tRNA-synt_1g  tRNA synthetases class I (M)
    2.6e-05   24.6   0.0      8e-05   23.0   0.0    1.9  1  DALR_2        DALR domain
  ------ inclusion threshold ------
        1.2    8.9   6.3       0.35   10.7   0.1    2.3  2  OEP           Outer membrane efflux protein
        6.1    8.3   9.9          2    9.8   5.4    2.6  2  40S_SA_C      40S ribosomal protein SA C-terminus


Domain annotation for each model (and alignments):
>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.4   0.0  7.3e-117  2.6e-113       8     297 ..      44     474 ..      39     478 .. 0.96

  Alignments for each domain:
  == domain 1  score: 378.4 bits;  conditional E-value: 7.3e-117
                   TEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHH.TT-EEEEEEEBB--SHHHHHHHHHTTS-................................ CS
  tRNA-synt_1e   8 kkvtlYvCGptvydashlGhaRslvafDilrrilqa.lgYdvqfvqnvtDidDkiikrareeeks................................ 71 
                   +++t+Y CGptvyd++hlGhaR++v++Dilrril++ +g++v+fv n+tD+dDkii+r r++ +                                 
    KKY24175.1  44 ESLTWYACGPTVYDDAHLGHARNYVSTDILRRILRDyFGFKVNFVMNITDVDDKIILRGRQQFLLeryraqhqqvdeqvlqdvseayaayvkknlpl 140
                   579********************************99*************************99999****************************** PP

                   .............................................................................................HHHH CS
  tRNA-synt_1e  72 .............................................................................................vkel 75 
                                                                                                                +++l
    KKY24175.1 141 ineagvpspdefreaaqkaygmvlkgeslsgegrpgdkeakikmhintvtaatdvmaktsstadvfypavadlmaphldskegssvssqdhsiWNKL 237
                   ************************************************************************************************* PP

                   HHHHHHHHHHHHHHTT----SB--BGGGGHHHHHHHHHHHHHTTSEEE-TTS-EEE-GGG-TT....TTTTTT--HHHHHHT----S-.....-S-S CS
  tRNA-synt_1e  76 aekfieefkkdleaLnvlkptleprvsekvdeiielvekliekgyaYavsdgdvyfdvskkee....Ygklskqnleelelgaegevs.....eekk 163
                   +++f++ f++d+++Lnv  p++ +rv+e+ ++i ++v++++++++ Ya+sdg vyfd  ++e+    Y++l+++n+++ el+a+ge++     ++k+
    KKY24175.1 238 TKEFEDRFFRDVRELNVMDPDTITRVTEYGKQIADFVDRIVANNFGYATSDGSVYFDIDAFEKagnpYARLEPWNKGDKELQADGEGAltqktSQKR 334
                   *********************************************************9877644444*****************99988899899** PP

                   STT-EEEEEE--TTS--B--TTSSEEE-SSHHHHHHHHHHH-SSEEEEEEEGGGTTTHHHHHHHHHHHHSS....S--EEEEEEE--EEETTBE--T CS
  tRNA-synt_1e 164 dkkDfaLWkaskegepswdsPwgkGRPGWhieCsvmaskllgseidihsGGiDLafPhhenelaqseaafd....kqlvkyflhnghlkiegekmsk 256
                   ++ DfaLWkask+gepsw sPwg+GRPGWhieCs+mas+ lg+++dihsGGiDLafPhh+nelaqsea+ +    +q+v+yflh ghl+i+g kmsk
    KKY24175.1 335 SDADFALWKASKPGEPSWSSPWGQGRPGWHIECSAMASAKLGRQMDIHSGGIDLAFPHHDNELAQSEAYWQdgqkEQWVNYFLHMGHLSIQGSKMSK 431
                   ********************************************************************974455579******************** PP

                   TTT---BHHHHHTT..S-HHHHHHHHHSS-TTS-EEE-HHHHH CS
  tRNA-synt_1e 257 sLknfitikdvlkk..fdprqlRllllsahyrsqldfkeelle 297
                   sLknf+ti+++l +  ++pr lR+++l   +++ ++ ++el++
    KKY24175.1 432 SLKNFTTIRKALDRgdWTPRSLRIVFLLGGWKDGIEITDELVT 474
                   ************964488*******************999876 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   2.8e-05       0.1      12      44 ..      57      90 ..      50     136 .. 0.80
   2 !    9.5   0.0   9.9e-05      0.35     308     352 ..     409     455 ..     402     465 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.8e-05
                  S---HHHHHHHHHHHHHHHHHHHT.T-EEEEEEE CS
  tRNA-synt_1g 12 gklHlGhllevisaDifaRykrlr.geevlfvcg 44
                  ++ HlGh+++++s+Di+ R  r   g +v fv  
    KKY24175.1 57 DDAHLGHARNYVSTDILRRILRDYfGFKVNFVMN 90
                  678******************9766999999865 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 9.9e-05
                   T----S-EEEE--EEE--------------HHHHHHH..H-HHHHHH CS
  tRNA-synt_1g 308 elklpkkvvaheyltvegkKlSkSrgvvvkakealer..ldadllRY 352
                   + + ++     ++l ++g+K+SkS +++ ++++al+r   ++  lR 
    KKY24175.1 409 KEQWVNYFLHMGHLSIQGSKMSKSLKNFTTIRKALDRgdWTPRSLRI 455
                   555666777889*********************99985555666665 PP

>> DALR_2  DALR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.2e-08     8e-05       2      57 ..     518     574 ..     517     580 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.2e-08
                 HHHHHTBT--HHHHHHHHHHHHHHHHHHHHTT.-HHHHHHHHHHHHHHHGGGT-S-S CS
      DALR_2   2 FeeaMdDDFNTaeAiavlFelakeiNralkee.dkaaasalkallrelaevLGllqe 57 
                 ++ea+ D FNT+ A+a++  l+ + N+a+k+  ++a+  al+  + ++ +v+Gl  +
  KKY24175.1 518 IYEALCDSFNTPVAMAAISNLITKYNAAEKGPhSTADVVALALYITKMVNVFGLNGN 574
                 589************************55544388888999999*********9655 PP

>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   9.6e-05      0.35      63     145 ..      82     160 ..      55     162 .. 0.78
   2 ?   -0.7   2.5       0.3   1.1e+03     116     151 ..     709     745 ..     706     748 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.6e-05
         OEP  63 gttsvgltlsqplfdggkrrarvkaakaqleaaeaqleqarqqlrlevaqaylqlllakeql.elaeealklaekalelaeary 145
                 g   + +++ +++ d +  +  + +++  le  +aq++q+ +q+ ++v++ay+ +++  ++l  ++e+ + + ++  e+a+++y
  KKY24175.1  82 G---FKVNFVMNITDVDDKIILRGRQQFLLERYRAQHQQVDEQVLQDVSEAYAAYVK--KNLpLINEAGVPSPDEFREAAQKAY 160
                 3...8899999*****999999********************************987..4444666666666666666666655 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.3
         OEP 116 qlllakeql.elaeealklaekalelaearykaGlis 151
                 +ll+a+e++ e a+e +++ ek+ + a++r ++G+ +
  KKY24175.1 709 ELLAAREEReERAREKQAAKEKREKEAREREEKGRLD 745
                 6788888888889999999999999999999999865 PP

>> 40S_SA_C  40S ribosomal protein SA C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       3.2   1.1e+04      11      45 ..     316     353 ..     312     381 .. 0.52
   2 ?    9.8   5.4   0.00056         2       7      82 ..     718     801 ..     714     806 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.2
    40S_SA_C  11 keeqaaaekalvkkeeqeewtapv.ef..tepevadWa 45 
                 ke qa  e al++k +q+   a    +   +p   +W+
  KKY24175.1 316 KELQADGEGALTQKTSQKRSDADFaLWkaSKPGEPSWS 353
                 55555555555554442222222111122333333333 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00056
    40S_SA_C   7 Eeiekeeqaaaekalvkkee..qeewtapvef..tep...evadWaeegvavpsvpaaaaaaaaevkaaedwsaqpa.tedWsa 82 
                 Ee  +e qaa+ek   ++ e  ++   +p+e+   e+     ++W++eg+++     +  +++   k ++dw+ q   +e W a
  KKY24175.1 718 EERAREKQAAKEKREKEAREreEKGRLDPKEMfkLEGirdDFSEWDTEGMPTKDKDGKELPKSRVKKLKKDWDRQKKaHETWLA 801
                 788889999999987777665444455677554533366699********************999999******9976999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (807 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1243  (0.069329); expected 358.6 (0.02)
Passed bias filter:                      634  (0.0353617); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 5277.93
//
Query:       KKY24176.1  [L=425]
Description: putative clock controled protein (ccg-8) [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-42  144.3   8.7    4.8e-29  101.9   1.6    3.2  3  Opi1       Transcription factor Opi1
  ------ inclusion threshold ------
       0.01   15.5   0.1       0.05   13.3   0.0    2.1  2  BAG6       BCL2-associated athanogene 6
      0.035   13.1   2.0        2.3    7.1   0.0    2.8  3  Perilipin  Perilipin family
       0.11   11.8   0.0       0.22   10.9   0.0    1.5  1  Ofd1_CTDD  Oxoglutarate and iron-dependent oxygenase degradat


Domain annotation for each model (and alignments):
>> Opi1  Transcription factor Opi1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.1e-06    0.0093       7      47 ..      76     117 ..      73     131 .. 0.70
   2 !  101.9   1.6   1.1e-32   4.8e-29     189     333 ..     208     347 ..     139     353 .. 0.83
   3 !   31.4   0.3   2.6e-11   1.2e-07     382     420 .]     351     389 ..     344     389 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.1e-06
        Opi1   7 slplvgsav....RvYesgkassrvvkYgAelvEssvktiskpvi 47 
                 ++pl++sav     +Y ++k++s+v++Y Ae+ E     i +pv 
  KKY24176.1  76 QVPLLSSAVngsmYAYTQTKSYSPVIRYPAEFLERN---IGNPVA 117
                 556655554222279******************954...444444 PP

  == domain 2  score: 101.9 bits;  conditional E-value: 1.1e-32
        Opi1 189 regaptaRsrWqavLleatslAGGlgaalseesmkrLkYCLhwLqyAtAHldaqilvLrdfiaalqvipdrssarrrqpiseealrkltevkkdivsti 287
                 +  +++    Wq  L+   s+  Glg+a+se+s++ LkYCL wL++A+  l+  i+ +rd ++  +   d++  +++         +l ++ +d+ +t+
  KKY24176.1 208 QTHQNQPAPGWQTRLMV--STS-GLGVAMSEQSRRNLKYCLSWLRWANDRLAGVIIAVRDVLKDWEEGTDHDGDQQQAA----VTARLQALSRDVAETV 299
                 3333333778**99988..455.9*************************************999998888887744433....34579999******** PP

        Opi1 288 RkvvdvvskYAGgaLPepArsrvRgfiLkLPsrW..Asktaesgitpa 333
                 ++vv  vs+YAGgaLP++A++ v  +  +LP+rW  As++a+++ +++
  KKY24176.1 300 KRVVAEVSNYAGGALPQNAKELVHRYFNSLPHRWryASTMADTNAETQ 347
                 *********************************9999******98876 PP

  == domain 3  score: 31.4 bits;  conditional E-value: 2.6e-11
        Opi1 382 aavvaaqriLslAtEsLDmlrnvtgvvkdsldrAdaWve 420
                  +v  + r+L lA E+L+m+ +vt vv+d+l  A++W+e
  KKY24176.1 351 ETVSNGRRVLALAREGLNMMSQVTVVVNDTLTSAETWCE 389
                 4567799*******************************7 PP

>> BAG6  BCL2-associated athanogene 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.55   2.5e+03      63      81 ..     224     242 ..     221     244 .. 0.86
   2 ?   13.3   0.0   1.1e-05      0.05      17      67 ..     330     379 ..     321     389 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.55
        BAG6  63 halSDlrldLsqpppRhLs 81 
                 ++ S l +++s+++ R+L+
  KKY24176.1 224 VSTSGLGVAMSEQSRRNLK 242
                 6779999*********996 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.1e-05
        BAG6  17 PfleryieileedptfeesdntegreeaqrildrvsEalhllshalhalSD 67 
                 P   ry +++ +d+++e++++ e++ +  r+l ++ E l ++s + +++ D
  KKY24176.1 330 PHRWRYASTM-ADTNAETQNEHETVSNGRRVLALAREGLNMMSQVTVVVND 379
                 6677888877.5888999999999*************************99 PP

>> Perilipin  Perilipin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0   0.00051       2.3      12      46 ..      75     109 ..      64     118 .. 0.87
   2 ?    3.6   0.2     0.006        27     275     342 ..     262     325 ..     241     365 .. 0.76
   3 ?    0.2   0.2     0.066     3e+02     227     309 ..     336     417 ..     328     420 .. 0.55

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00051
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   Perilipin  12 anLplvsstyelvssaYsstKeshPllksvceaaE 46 
                  ++pl+ss+ +    aY++tK   P+++   e  E
  KKY24176.1  75 SQVPLLSSAVNGSMYAYTQTKSYSPVIRYPAEFLE 109
                 589***********************997777666 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.006
                 ----------------------..SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT.S-HHHHHHHHHH CS
   Perilipin 275 llqswlewkkkqqeeseeeeeeeeeeqvEsrtLsllrsltqqLqttcqslvssiqg.lPssvqekvqqa 342
                 ++  +++w++++ ++  ++     ++ v  r  +l+r++++++++++ ++   + g lP++ +e v++ 
  KKY24176.1 262 VRDVLKDWEEGTDHDGDQQ-----QAAVTARLQALSRDVAETVKRVVAEVSNYAGGaLPQNAKELVHRY 325
                 6667788888887665543.....556888888999**********99999998765899998887754 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.066
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--...---------------------------------.....SHHHHHHHHHH CS
   Perilipin 227 qhsleklrqakqraqealaqlsstldLielakkglsaanqklseaqekllqswlewkkkqqeeseeeeeeee...eeqvEsrtLsl 309
                  ++++      q+ +e++++     +++ la++gl+ ++q+    ++ l +s   w ++  +++e+++ +     + ++E + ++l
  KKY24176.1 336 ASTMADTNAETQNEHETVSNGR---RVLALAREGLNMMSQVTVVVNDTL-TSAETWCERLGKKNENRQYSLPpptDVKMEPQSMNL 417
                 5556666666677777777777...455556666666666555544454.445555554444444333322234477777776665 PP

>> Ofd1_CTDD  Oxoglutarate and iron-dependent oxygenase degradation C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.8e-05      0.22      39     100 ..     291     355 ..     280     392 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.8e-05
                 B-HHHHHHHHHHH..HHHHHHS----SGGG--TT-EE-B-TTTEE-EEE-SSS----SSHH....H CS
   Ofd1_CTDD  39 LkkeiaeklkksleseekekekelpqkseeiekpWkvagPphkqrylyldseeatekkeee....d 100
                 L++++ae++k+ + + ++ +  +lpq+++e  +++  +  ph++ry++  +++++e+++e+    +
  KKY24176.1 291 LSRDVAETVKRVVAEVSNYAGGALPQNAKELVHRYFNSL-PHRWRYASTMADTNAETQNEHetvsN 355
                 8999*********9999999999**********987777.5******9888887777776634430 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       857  (0.0477997); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 2827.30
//
Query:       KKY24177.1  [L=514]
Description: hypothetical protein UCRPC4_g02543 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3743.70
//
Query:       KKY24178.1  [L=548]
Description: putative serine threonine-protein phosphatase 2b catalytic subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-36  126.9   0.1      3e-36  125.9   0.1    1.5  1  Metallophos  Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
       0.11   12.2   1.1        2.1    8.1   0.1    2.3  2  DUF1647      Protein of unknown function (DUF1647)


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.9   0.1   3.3e-40     3e-36       2     203 ..     106     306 ..     105     307 .. 0.93

  Alignments for each domain:
  == domain 1  score: 125.9 bits;  conditional E-value: 3.3e-40
                  EEEEEESBTBTTCCTHHHHHHHHHHHHHHH.TTESEEEEESTSSSSS..HHHHHHHHHHHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddllre.ekpdlvllaGDlvdrg..dlekellellaalvkypipvylllGNHe........gfeeellnkygyl 88 
                  +i+v+gD+H     gq++dl+kl++   ++ e ++l+l  GD+vdrg  ++e+ +l+l++ ++ yp+ ++ll+GNHe        +f+ e+++ky   
   KKY24178.1 106 PITVCGDVH-----GQYYDLMKLFEVGGDPaETRYLFL--GDYVDRGyfSIEC-VLYLWSLKIWYPNTLWLLRGNHEcrhltdyfTFKLECKHKYS-- 193
                  79*******.....**********9884444799****..*******777777.7777*********************99999999999999999.. PP

                  HHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC...HHHHHH.HHHHTTCSEEEEEESSESSCSSSCSCCH CS
  Metallophos  89 gifsepwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepg...dewlkd.lekrekadwvivlgHsplyrgsgylfgd 181
                      ++++ + e f  lpla+++++  ++l++hGg spel ++l++l+s+++++e+p++g   d++++d le++++ ++   + H  +  g++y f++
   KKY24178.1 194 ---ENIYNACMESFCSLPLAAIMNK--QFLCIHGGlSPEL-HTLEDLKSIDRFREPPTHGlmcDILWADpLEEFGQEKTGEYFVHNHVR-GCSYFFSY 284
                  ...789*******************..********88888.****************************99999999999999999999.******** PP

                  HHHHHHHHHTTESEEEEESSSS CS
  Metallophos 182 ealedllkkygvdlvisGHtHv 203
                  +a++ +l+k+++  +i++H+ +
   KKY24178.1 285 PAACAFLEKNNLLSIIRAHEAQ 306
                  *******************976 PP

>> DUF1647  Protein of unknown function (DUF1647)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.012   1.1e+02       2      46 ..     187     234 ..     186     245 .. 0.69
   2 ?    8.1   0.1   0.00023       2.1      97     132 ..     334     370 ..     303     375 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.012
     DUF1647   2 eCksektgksydfCYkdpqn...sssiGkkFdCslvetleklklleee 46 
                 eCk + ++++y+ C ++      +  + k+F C +     +l+ le+ 
  KKY24178.1 187 ECKHKYSENIYNACMESFCSlplAAIMNKQFLCIHGGLSPELHTLEDL 234
                 7*************9987652225678899999885554444444443 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00023
     DUF1647  97 ldlseeeieklk.kdknlevrkFntskYPeyvknlke 132
                 ld+ +++ + lk +++ +++r+Fn +  P +  n+++
  KKY24178.1 334 LDVYNNKAAVLKyENNVMNIRQFNCTPHPYWLPNFMD 370
                 8899999999**888899***********99999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3526.19
//
Query:       KKY24179.1  [L=713]
Description: putative rna-directed rna [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-89  301.8   0.0    1.8e-89  301.0   0.0    1.3  2  RdRP      RNA dependent RNA polymerase
  ------ inclusion threshold ------
        1.8    8.8   6.8        7.2    6.9   6.9    1.9  2  DUF4611   Domain of unknown function (DUF4611)
          7    6.7   7.2        5.7    7.0   1.3    2.8  3  THP2      Tho complex subunit THP2


Domain annotation for each model (and alignments):
>> RdRP  RNA dependent RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.0   0.0     3e-93   1.8e-89     169     586 .]       1     458 [.       1     458 [. 0.82
   2 ?   -3.2   0.1      0.39   2.3e+03     559     586 .]     491     520 ..     475     520 .. 0.70

  Alignments for each domain:
  == domain 1  score: 301.0 bits;  conditional E-value: 3e-93
        RdRP 169 iSrelarkiakklglkkaeelPsafQiRigGaKGvlavdkrl..kpek.......ielr.pSqiKfkseed.....dsekrtleivkvsskpkpayLnr 252
                 +S++lar i++klg+   + +Ps+fQ+R++GaKGv++v+k+   +  +       +e+  +Sq K++ +       ++++r +e++k+ss+p+p  L  
  KKY24179.1   1 MSESLARVICHKLGI---DGIPSVFQGRVAGAKGVWMVEKDSncR--RlssrgfyLEVSdDSQLKIRPHPAdtqelEESQRIFEVLKWSSPPRPGALTF 94 
                 8**************...589******************888542..24557888777659*****66555888887789******************* PP

        RdRP 253 qlikiLedlgvpeevflellkealeelrealkda...............gaaaell....kka.gd.pskleellaelldsgfdpseldpflrsllkal 330
                 ql++iL d+gv + v+ ell++ ++++++ l +a               +    +     ++a g  p++  e    ll+sgf+ s++  +l + +++ 
  KKY24179.1  95 QLLTILFDRGVSKVVLKELLESDISSIYDDLVSAkndplllrawlrsahS----FTrskdTEAlGLwPAENIEQTVLLLESGFRLSDS-ALLVNRIRQS 188
                 *********************************************66541....33332333364459999999999*********99.99999999** PP

        RdRP 331 vkeslrklkekarIpvpksatllgvaDetgvLkegevfvqlse.aldqedeksktkllkgd.vlVtRnPalhpgDiqvvkavdv.pelrhlkdviVFst 426
                 +++ ++++++ ++I+vp s++++++aD++g+L e+ev++ +s+ ++ ++ ++ ++ ll+g  vlV+R+Pal p+Diq+ ka  +  elrh++dviVF+t
  KKY24179.1 189 LRDYMTRYRDYYQIRVPLSTSVFCIADPYGILAEDEVHCGFSStWTHAT-DQFNDHLLDGIdVLVARSPALLPSDIQRRKAR-YkLELRHFRDVIVFPT 285
                 *******************************************775543.333799999*99********************.747************* PP

        RdRP 427 kGdrslaselsGGDlDGDkywViwdpe.le.f.apakpsneepadyee.................akpkeldrevtvedi.....adffveymksdvlG 500
                 +G+++las+lsGGD+DGD++wV+wd++ ++ f + +    ++p+   e                 +      r++ +++i     + f +++ +   lG
  KKY24179.1 286 RGSTPLASMLSGGDYDGDMVWVCWDQKlVQpFrN-EGLAPDRPS---EvacgiksmstplgeifkH-----VRKIRKKEInrffmNCFSFNL-NPGFLG 374
                 ***************************8876642.211113333...2345788888877765531.....334444444222324455555.999*** PP

        RdRP 501 lisnahl.aiadqeegiddpkclkLaelhskaVDypKtGipvdk...keipr..elkkpkekPdfkekekkekakkpyykskkilgkLyrev 586
                  ++ + + +++++  +i++++++kLa+++  +VD++K G  +++   k i +  +l   ++ P++ + +       +  +s++il++L ++v
  KKY24179.1 375 YCTREFEkVVYHE-GSISSSNAIKLATMAGYLVDAAKGGLLLSEqdwKGIRNsiSL-GVQAIPAYRDPNA------NRGNSDNILDYLKFSV 458
                 *******9****5.*****************************5334333332233.4566****97653......3378********9876 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.39
        RdRP 559 fkekekkeka..kkpyykskkilgkLyrev 586
                 +++++k++++    + yk k+il+kL+++v
  KKY24179.1 491 WDDTDKRSSQeiMDKNYKLKTILDKLWENV 520
                 66666633335655679********99875 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.8   1.1e+04      17      40 ..     330     353 ..     326     361 .. 0.68
   2 ?    6.9   6.9    0.0012       7.2      48      78 ..     650     680 ..     638     688 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.8
     DUF4611  17 vkceapgeadrlksllsgvaqlre 40 
                 v+c   + + +l  +   v ++r+
  KKY24179.1 330 VACGIKSMSTPLGEIFKHVRKIRK 353
                 667777777777777777777765 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0012
     DUF4611  48 tlveqeaqddvaaagdeeeegededdeeeek 78 
                 +lveq+ +++ a +++++e+++d+dd+  e+
  KKY24179.1 650 KLVEQDVEEQLAGDDEDHEDDDDDDDDHLEN 680
                 69****9998888888777777777765544 PP

>> THP2  Tho complex subunit THP2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.3   7.6e+03      66      80 ..     262     276 ..     261     277 .. 0.84
   2 ?    7.0   1.3   0.00095       5.7      38     103 ..     462     530 ..     443     539 .. 0.89
   3 ?    2.0   0.1     0.035   2.1e+02      95     116 ..     688     709 ..     683     712 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.3
        THP2  66 eiKmerakytleNky 80 
                 +i+  +a+y le ++
  KKY24179.1 262 DIQRRKARYKLELRH 276
                 68899******9776 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00095
        THP2  38 elqeilekyee...esedaeelraklekYldeiKmerakytleNkyllkdklkeltkevnrWrkewdni 103
                  + ++l ++++   + ++++e ++ l++  d+     ++  ++ +y lk  l +l ++v++ r+ew n+
  KKY24179.1 462 AIDKLLAQFNTqwkHVTESTEADRDLTTLWDDTDKRSSQEIMDKNYKLKTILDKLWENVKNIRTEWFNV 530
                 5778999999977667788899999********999999***************************876 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.035
        THP2  95 rWrkewdniEnllFgdgpnslk 116
                 +W + wd+   ++ g++++ l+
  KKY24179.1 688 SWDSVWDHAGGMMVGESSEGLN 709
                 7****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.51
# Mc/sec: 4234.51
//
Query:       KKY24180.1  [L=194]
Description: hypothetical protein UCRPC4_g02546 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-09   36.8   0.4    3.7e-09   36.8   0.4    2.1  2  Voldacs       Regulator of volume decrease after cellular swe
  ------ inclusion threshold ------
      0.042   13.7   0.2      0.056   13.3   0.2    1.2  1  NRIP1_repr_2  Nuclear receptor-interacting protein 1 repressi


Domain annotation for each model (and alignments):
>> Voldacs  Regulator of volume decrease after cellular swelling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.4   4.1e-13   3.7e-09      63     127 ..       6      90 ..       2      99 .. 0.78
   2 ?   -2.7   3.0      0.66   5.9e+03      80      80 ..     160     160 ..     129     192 .. 0.55

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 4.1e-13
     Voldacs  63 eegededdneededeeessveltlvPkna..............e.......etildnifealsacqelhpdpdeeddeedeeneen 127
                 ++g++++ + + ede+  sv lt++P+ +              +        t ++ +f+alsac++lhpdp  +++e+d++++++
  KKY24180.1   6 SSGDEAGGDGSAEDEDVTSVSLTIIPSPSpldssapaetlattQettsdptPTEATLLFTALSACSNLHPDPI-DENEDDGQQNPA 90 
                 56789999999******************998887777666651556667644599****************9.555555555544 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.66
     Voldacs  80 s 80 
                  
  KKY24180.1 160 A 160
                 1 PP

>> NRIP1_repr_2  Nuclear receptor-interacting protein 1 repression 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   6.3e-06     0.056     182     228 ..      67     116 ..      15     124 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.3e-06
                   XXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX....X CS
  NRIP1_repr_2 182 ldlcksKe..skaekkesaqkepaFsASkLLQN.LAQcGlqsssssPPik 228
                   l  c + +  +  e+++  q++paF  S L Q  L Q G q+   +PP+ 
    KKY24180.1  67 LSACSNLHpdPIDENEDDGQQNPAFASSALFQAgLIQPGSQTGDLPPPMP 116
                   4444444433556677889*************65***********99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.51
# Mc/sec: 1154.01
//
Query:       KKY24181.1  [L=639]
Description: hypothetical protein UCRPC4_g02547 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.017   13.3   0.2      0.027   12.7   0.2    1.2  1  E3_UbLigase_R4  E3 ubiquitin-protein ligase UBR4


Domain annotation for each model (and alignments):
>> E3_UbLigase_R4  E3 ubiquitin-protein ligase UBR4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   1.5e-06     0.027     115     236 ..     242     392 ..     231     403 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.5e-06
  E3_UbLigase_R4 115 aecgGlevllsllekirdlssgrellqvllkLlelcvkvkenreaLlelgalevlLetlklalsaea..........................ae 183
                      e + l  +l l     +++s+rel++++++L   + k+++ r  +l+++++e  L++++++++++                            +
      KKY24181.1 242 DEFQSLSQILALT--SYNSTSERELVDSMVNLPGTAGKLQSERIRMLDISSVEDDLKEARRSIEHTPrfgvswtgsglphlkqwlsessvtsnGH 334
                     4444444444332..2356899******************************************9889**********************99999 PP

  E3_UbLigase_R4 184 laeqlllivesilseanesdleesksssktv.....eekageeakeqvemlLerlkse 236
                     +a +ll++v+sil  a+++ +++  +s ++      +e++ +e +  ++m+L +++ e
      KKY24181.1 335 IATTLLQVVQSILDAASANIEQQAFRSMAERqtdtiSEETRTELQGAIDMFLAQAHLE 392
                     *************99887755544333333223445888889999999***9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4236.70
//
Query:       KKY24182.1  [L=125]
Description: putativelike antibiotic response [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-39  133.2   8.5    3.7e-39  132.6   8.5    1.3  1  DUF3759   Protein of unknown function (DUF3759)


Domain annotation for each model (and alignments):
>> DUF3759  Protein of unknown function (DUF3759)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   8.5   2.1e-43   3.7e-39       1      92 []      10     101 ..      10     101 .. 0.99

  Alignments for each domain:
  == domain 1  score: 132.6 bits;  conditional E-value: 2.1e-43
     DUF3759   1 aykqvyeeeehkaklshellagAAafeAvkayedhqrkeGkpvshafaKellAgfagaevdklvetkgldeidrekakreAkekaeelydqq 92 
                 a+ qvy++++h+ak+she++agAAafe++k +ed+qrkeGkpvshafaKellAg++g e+dkl+etkg++e+d+ +a+r+Ak++ae++ydq+
  KKY24182.1  10 AHAQVYGDQQHEAKFSHEVVAGAAAFEGFKIFEDRQRKEGKPVSHAFAKELLAGVVGGEIDKLAETKGMNEYDKIQAHRHAKKNAEDMYDQH 101
                 689***************************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 956.43
//
Query:       KKY24183.1  [L=802]
Description: putative signal transduction protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-99  331.4  34.1    7.8e-99  331.1  34.1    1.1  1  EXS          EXS family
    6.9e-49  167.8   6.1    6.9e-49  167.8   6.1    2.1  2  SPX          SPX domain
     0.0032   17.7   2.3     0.0058   16.9   2.3    1.4  1  DARPP-32     Protein phosphatase inhibitor 1/DARPP-32
  ------ inclusion threshold ------
       0.12   12.5   0.0       0.23   11.6   0.0    1.4  1  FUR          Ferric uptake regulator family


Domain annotation for each model (and alignments):
>> EXS  EXS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.1  34.1  1.7e-102   7.8e-99       2     331 .]     305     630 ..     304     630 .. 0.96

  Alignments for each domain:
  == domain 1  score: 331.1 bits;  conditional E-value: 1.7e-102
         EXS   2 plpyrvlllvvlglllwalnlhvlsklginyalifeldprsslsyrqlyelaalllllllllllllllsaevd.alellplllllllllllllplnily 99 
                 +++y +++l+++++ll+ l++ v+sk++iny++ife+d+r+ l++rql el++l++++l+l+l+l+++++  + ++ ++p++l++l+++++l+p ++ly
  KKY24183.1 305 LQIYGGYFLALFLFLLFVLDCRVWSKAKINYVFIFEYDTRHVLDWRQLGELPCLFFFFLGLFLYLNFHQYGLEsMYIWWPVVLIALTMAIMLYPARVLY 403
                 799****************************************************************9777774677********************** PP

         EXS 100 rssrrrflrtllrillaplapvefadfllaDiltSlakvlgDlaltvclyasswseedrkcgss.svvvplllslPyliRfrQclreyrdtkkr.phll 196
                 ++sr++++++ +r+lla+l+pvef+df+l+D+++S+++++g+++l++clya++w + +++c+ss s ++ ++++lP+++R++Qclr+y+d++++ phl+
  KKY24183.1 404 HHSRQWWAYSNWRLLLAGLYPVEFRDFFLGDMFCSQTYAMGNIELFFCLYANDWGN-PPQCNSShSRLLGFFSTLPAVWRALQCLRRYYDSRNWfPHLV 501
                 *******************************************************9.****777466777***************************** PP

         EXS 197 NalKYatafpvivlsalqrlsksdesestlrvlwllaalvnslysfiWDvtmDWgLlkllksknwflRdellypkkwvYylaivldlvlRftWslklss 295
                 N++KY ++++ ++  +l+r+++++    +lr++++l+a++n++y +iWD++mDW+Ll+    ++++lR++l y++ w+Yy+a+vld vlRf W++++++
  KKY24183.1 502 NCGKYGFNILFYMSLSLYRVHRAQ----ELRIVFILFATINAIYCSIWDLAMDWSLLNPYA-RYPLLRNTLGYRRVWIYYAAMVLDPVLRFNWIFYAIF 595
                 **********************99....*****************************6666.59**********************************9 PP

         EXS 296 hlhsiqeselgvfllellEvlRRwvWvffRvEnEhv 331
                 + +++q+s++++f++++ E+lRR +W++fRvEnEh+
  KKY24183.1 596 T-NELQHSAFLSFFVAFSEILRRGMWTLFRVENEHC 630
                 9.9********************************7 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.8   6.1   1.5e-52   6.9e-49     179     384 .]      24     212 ..       2     212 .. 0.78
   2 ?   -1.6   4.0      0.43   1.9e+03      92     137 ..     676     773 ..     629     801 .. 0.51

  Alignments for each domain:
  == domain 1  score: 167.8 bits;  conditional E-value: 1.5e-52
         SPX 179 plraekeFferLdseLnkvetFykakeeefterlesLrkqlealrprrikeaeerksdlyrwreifglksveaqvfessreldrgelseeardkevsee 277
                 +  ++++Ff++LdseL k+e+Fyk+ke+e+ erl+ Lr ql+++r+rr +e +  ++  y++         ++++   + e+++       ++   s++
  KKY24183.1  24 LDAKQDDFFDFLDSELRKIEEFYKMKENEASERLQLLRGQLHEMRDRRLAELSVPRNGGYST--------KKSSIVPDKEERNGIL-----SRAVLSKS 109
                 33499*********************************************777775553333........4444445555544433.....11222222 PP

         SPX 278 lekngwikptksklekkr....neralekvkpektlkafldsvrrdylrk..enrvklkkakkklkkafvelYrgLelLKsYqeLNrtAFrKIlKKfDK 370
                 le++ ++          r    ++ a++k +++ +      +++rdy+r+  ++ v+++ ak+klk a++e+YrgLelLKsY+ LNrtAFrK++KK+DK
  KKY24183.1 110 LEETFSK----------RrigkTSAAMSKLASPPKPAPQDPESQRDYTRRpqQDGVQYRVAKRKLKLAMQEFYRGLELLKSYALLNRTAFRKMNKKYDK 198
                 3322222..........223338999999986777777789********************************************************** PP

         SPX 371 vtaltaskrymkev 384
                 ++++++++rym+e+
  KKY24183.1 199 AVNARPTQRYMSEK 212
                 ***********986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.43
         SPX  92 e.................................................slprrsplsrssrssssygglvssppsansssssddssesnpa...ds 137
                                                                   +++rr    ++++ss+  ++   +++++++ ++++d+++   a   d+
  KKY24183.1 676 GadiervasvhggslrmrksrtlqhvaetptlrglqrvgtiitqahaqdfEKKRRPGVTGDTPSSRGLMARGGESSEEEDEDDEEDNDGGTDAvetDE 773
                 13444444444466666666667777777777777777777777777776444444445555555555555555555555555555555552222222 PP

>> DARPP-32  Protein phosphatase inhibitor 1/DARPP-32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   2.3   1.3e-06    0.0058      53     137 ..     682     782 ..     658     800 .. 0.57

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.3e-06
    DARPP-32  53 hqkvegenaslkpkrrnpcvytpPslkavQr....laeahlqklgaee...nledspd...........gqeeedeegeaeasedsadseeeeeeeeee 133
                    v+g +  ++  r+ + v ++P+l+ +Qr    + +ah q  +++       d  +           ++eeede  e++ +++ +d+ e +e+ ++ 
  KKY24183.1 682 VASVHGGSLRMRKSRTLQHVAETPTLRGLQRvgtiITQAHAQDFEKKRrpgVTGDT-PssrglmarggeSSEEEDEDDEED-NDGGTDAVETDENSSDL 778
                 456788899999*******************4443468888888876666522233.236666666544333333333322.22222222222222222 PP

    DARPP-32 134 eeee 137
                 + +e
  KKY24183.1 779 DVDE 782
                 2221 PP

>> FUR  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.2e-05      0.23      25      74 ..     151     200 ..     143     226 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.2e-05
                 EHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESS CS
         FUR  25 saeevykelkeedpeislaTVYrtLklleeaglvkelefedgesryelak 74 
                 + + v+ ++ +++ ++ +   Yr L+ll++  l++++ f++ +++y+ a 
  KKY24183.1 151 QQDGVQYRVAKRKLKLAMQEFYRGLELLKSYALLNRTAFRKMNKKYDKAV 200
                 5677899999************************************9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       989  (0.055162); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 5484.30
//
Query:       KKY24184.1  [L=452]
Description: putative glycosyl hydrolase family 71 protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   7.3e-138  459.4  15.1   8.8e-138  459.2  15.1    1.1  1  Glyco_hydro_71  Glycosyl hydrolase family 71
  ------ inclusion threshold ------
      0.084   12.9   0.3       0.19   11.8   0.3    1.6  1  Hydrolase_like  HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> Glyco_hydro_71  Glycosyl hydrolase family 71
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  459.2  15.1  9.8e-142  8.8e-138       1     374 [.      26     424 ..      26     425 .. 0.97

  Alignments for each domain:
  == domain 1  score: 459.2 bits;  conditional E-value: 9.8e-142
  Glyco_hydro_71   1 VfaHfmvgntenytasdwekDiklAkaagiDgFaLNigskdswtaeqladayeaAeavgfkLflSfDmavagawpksevislikkyashpaqlkv 95 
                     V+aHf+ gn++ +t+++w++Di++A++agiDgFa+Ni+ +d +t++ l++ay+aAe++gf+LflSfD+ + g w++++vis i++y++++a++++
      KKY24184.1  26 VYAHFIAGNAAGMTSDEWATDIAAAQKAGIDGFAMNIAPNDGNTDSVLETAYAAAETAGFSLFLSFDYLSNGVWSADSVISKINQYKDSSAYFNY 120
                     89*******************************************************************77************************ PP

  Glyco_hydro_71  96 ngkplvSTFeGeknaedwasiksalteeiffvPdfsslgaaaaaekaldvvDGlfsWeaWpkgatnmstetDeaylsalkgkpYmmpvSpwffth 190
                     +g+plvSTFeG +n+ dw+siks+ t ++ff+Pd+ slg +++ ++  +++DG+f W+aWp g+++m+t++De+y+sal+gkpYmm+vSpwf+t+
      KKY24184.1 121 EGSPLVSTFEGVDNTGDWESIKSS-T-GCFFIPDWASLGVSDFTSQ--SSIDGAFVWDAWPDGPSSMTTDNDESYMSALGGKPYMMAVSPWFYTN 211
                     ************************.5.8***************995..9******************************99************** PP

  Glyco_hydro_71 191 lgkesynknwvwrgddlwakRweqvlelqpdfveiitWNDygEShYigplkekkaqdgsskyvegmpHdgwrdllkyyiaayKtgsk........ 277
                     +  ++y+knw+wrgd+lw++Rweq++elqp +vei+tWNDygEShYigp++++  ++ s +y++gmpHdgwr+ l+yyi+ayK++++        
      KKY24184.1 212 M--PEYSKNWLWRGDTLWSDRWEQIIELQPAMVEILTWNDYGESHYIGPIHDSGIPS-SVEYASGMPHDGWRSYLPYYIEAYKSNNAtstststs 303
                     *..89***********************************************88888.99*************************999******* PP

  Glyco_hydro_71 278 ................kpaitedklvlwyRphpkkakcssgdttgnpana........elleDkvfvvallkspatvtvsvggkesetfsvk.aG 347
                                     +++ t+dk+++wyR++p +a +s+g+ttgn+a           +++Dk+f++++++++++vt++vg+++ ++f+++ +G
      KKY24184.1 304 ntttnsysastsssssSSSSTDDKITYWYRLTPGSA-GSTGGTTGNNAADgqtvysplVVSQDKIFASVYVTEASDVTIQVGENSASSFRATtSG 397
                     ***************99999****************.88*****9998888899***99***************************9986655** PP

  Glyco_hydro_71 348 vnklsvpfngetGkvkvsvvrngktva 374
                     v+++s ++ng+tG+v+++v+rng+tv+
      KKY24184.1 398 VSTFSTSMNGQTGNVTFTVSRNGATVV 424
                     *************************98 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   2.1e-05      0.19       5      46 ..      17      58 ..      13      69 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.1e-05
                    TSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEE CS
  Hydrolase_like  5 PepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksv 46
                    P++ + d  + ++ ++ ++  m  D  atDia+A++aG+++ 
      KKY24184.1 17 PHALATDKYVYAHFIAGNAAGMTSDEWATDIAAAQKAGIDGF 58
                    666666666666666667777899**************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1086  (0.0605723); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.53
# Mc/sec: 2546.31
//
Query:       KKY24185.1  [L=463]
Description: hypothetical protein UCRPC4_g02551 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-05   25.8   0.0    1.9e-05   25.4   0.0    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family
    8.9e-05   22.3   0.3    0.00019   21.2   0.3    1.5  1  Abhydrolase_1  alpha/beta hydrolase fold
     0.0066   15.7   0.2        0.1   11.9   0.0    2.5  3  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   3.1e-09   1.9e-05       2     139 ..     115     275 ..     114     413 .. 0.60

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 3.1e-09
                    EEE--GC.....G..CHHHH.....HHHHCCTCEEEEE--TTST.S-GGCS--HHHC.HHH..HHHHCCTT.............TTSEEEEEETCH CS
  Abhydrolase_6   2 lllHGagssassW..lvapL.....aallaagvhvlapDlpGhG.rsdpppldledl.adl..aalldelaa...........gggpvvlvGHSlG 75 
                    +l HG g++++ W   + ++       +  +g+++la+D+ G G +s+ +p+    + a++  + ++++              g+g++v vGHS+G
     KKY24185.1 115 VLTHGIGFDKTYWdiPYNNFnysyeNIATESGYCTLAIDRFGIGnSSHADPYQIVQApAEVgaLYQINSMLRngtlpgvnmtfGTGQIVNVGHSFG 210
                    899**********75255554444444555559**********93444444444332233333334444444788889999*99999999****** PP

                    HH....HHHHHHHCC..EE.EEES-..----TTTS----TTHHHHHHTT-CCCCHCCH..S-HSCCCCHHH CS
  Abhydrolase_6  76 Ga....lalaaaplalvvg.vlldppptalpagllaaalelllallallrllawlsre..plprlfladed 139
                          lal+   ++ v   ++l +   +   g +a++  ++ ++ +l  +l++ s    ++ +++++ ++
     KKY24185.1 211 SQqsymLALM---YPEVTDaLVLTG---FSFNGSFADLSLFHPKVARLNQPLRFGSPSnlSALQSLYNTPS 275
                    9833335555...664333355555...3333333333333332222222222222111112224444333 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.3   3.2e-08   0.00019      28     106 ..     144     233 ..     115     254 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3.2e-08
                    T.TSEEEEEEETTSTTSSSTTTGB......CHHSHHHHHHHHH..HH...HHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESE CS
  Abhydrolase_1  28 d.gfdvillDlrGvgySspapacin.....ddygtasvaddld..ri...ldalgddkltlvGhSmGGmialayaaeyperVkalvllga 106
                    + g++++++D  G g Ss a   +      +   +  ++ +l+   +      +g ++++ vGhS+G++++ ++a++ype  +alvl+g 
     KKY24185.1 144 EsGYCTLAIDRFGIGNSSHADPYQIvqapaEVGALYQINSMLRngTLpgvNMTFGTGQIVNVGHSFGSQQSYMLALMYPEVTDALVLTGF 233
                    269999999999999998887654467776444666677777777556757889*********************************987 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   1.7e-05       0.1      29     112 ..     144     236 ..     137     276 .. 0.75
   2 ?   -3.9   0.0       1.1   6.8e+03     189     204 ..     380     395 ..     377     397 .. 0.83
   3 ?    0.7   0.0     0.042   2.5e+02      30      59 ..     424     455 ..     414     461 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.7e-05
  Hydrolase_4  29 aqGfavyalDhrGhGrse...........gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalk 112
                  + G+ ++a+D  G G+s             + g + +++++++        v  + ++ +++ +GhS G+  +  ++l+yp+  ++l+l++  ++
   KKY24185.1 144 ESGYCTLAIDRFGIGNSShadpyqivqapAEVGALYQINSMLRNGTL--PGVNMTFGTGQIVNVGHSFGSQQSYMLALMYPEVTDALVLTGFSFN 236
                  67888999999999999887776666555555555555555554432..345555666699*********************888****997665 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.1
  Hydrolase_4 189 kitlPllllhGeaDkv 204
                  ++t P+ ++ G +D +
   KKY24185.1 380 SFTGPVHVVTGREDAI 395
                  6788**********98 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.042
  Hydrolase_4  30 qGfavyalDhrGhGrse..gkrghvpsfddyv 59 
                   +f+v +  + GhG s   g+++  +++++y+
   KKY24185.1 424 SNFSVSIPEAMGHGISVhyGAKAAYQEVQQYL 455
                  5799999999******9999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.35s 00:00:01.00 Elapsed: 00:00:00.55
# Mc/sec: 2526.40
//
Query:       KKY24186.1  [L=1494]
Description: putative abc transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-80  267.6  57.1    4.7e-41  140.5  27.8    2.7  3  ABC2_membrane    ABC-2 type transporter
    9.7e-37  126.5   0.0    3.6e-18   66.4   0.0    2.6  2  ABC_tran         ABC transporter
    5.2e-25   87.2  12.0    1.7e-22   79.1   0.0    4.0  3  PDR_CDR          CDR ABC transporter
    1.2e-15   57.8   0.1    3.5e-15   56.4   0.1    1.9  1  ABC_trans_N      ABC-transporter N-terminal
    6.2e-06   25.5  38.5    3.8e-05   23.0  15.5    3.3  3  ABC2_membrane_3  ABC-2 family transporter protein
    1.3e-05   25.4   0.0       0.02   15.0   0.0    2.7  2  AAA_33           AAA domain
    1.3e-05   25.1   0.0       0.11   12.3   0.0    2.6  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    0.00012   22.5   0.1      0.096   13.1   0.0    2.7  2  AAA_16           AAA ATPase domain
    0.00019   21.1   0.2      0.011   15.5   0.1    2.6  2  AAA_29           P-loop containing region of AAA domain
    0.00029   21.4   0.0      0.046   14.3   0.0    2.7  2  AAA_18           AAA domain
     0.0006   19.4   0.2      0.034   13.7   0.1    2.5  2  AAA_25           AAA domain
     0.0017   18.3   0.1     0.0063   16.4   0.0    1.9  2  RsgA_GTPase      RsgA GTPase
     0.0021   18.3   0.1      0.096   12.9   0.1    2.7  2  AAA_28           AAA domain
     0.0041   17.5   1.9          1    9.8   0.0    2.8  2  AAA_17           AAA domain
     0.0041   17.6   4.3       0.38   11.2   0.0    3.8  3  AAA_23           AAA domain
     0.0089   16.3   0.3       0.35   11.1   0.0    3.0  2  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.013   15.2   0.6        1.7    8.3   0.2    2.4  2  AAA_30           AAA domain
      0.017   14.6   0.0        1.7    8.0   0.0    2.9  3  SMC_N            RecF/RecN/SMC N terminal domain
      0.023   14.0   1.3        3.9    6.7   0.0    3.1  3  DnaB_C           DnaB-like helicase C terminal domain
      0.034   14.2   0.1      0.087   12.9   0.1    1.6  1  RB_B             Retinoblastoma-associated protein B domain
      0.035   14.0   0.4        6.7    6.6   0.1    2.5  2  NACHT            NACHT domain
      0.055   13.1   1.6       0.51    9.9   0.5    2.3  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.093   12.5   0.2         11    5.7   0.1    2.6  2  PduV-EutP        Ethanolamine utilisation - propanediol utili


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.5  27.8   6.1e-44   4.7e-41       2     210 .]     524     733 ..     523     733 .. 0.97
   2 ?   -2.8   0.2       4.4   3.4e+03      45      68 ..     785     808 ..     772     811 .. 0.59
   3 !  137.3  16.2   5.7e-43   4.4e-40       2     209 ..    1185    1394 ..    1184    1395 .. 0.97

  Alignments for each domain:
  == domain 1  score: 140.5 bits;  conditional E-value: 6.1e-44
  ABC2_membrane   2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.nsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsay 96 
                    qi++l+kr+fl  w+d++++ ++++++ ll+a+v+gtv+ nl+ + +++++r gllf+++lf+af+a+ ++ ++++ +r+++++++++ ++++ a 
     KKY24186.1 524 QIWILMKRQFLIKWQDKFSL-VVSWATSLLIAIVLGTVWLNLPkTASGAFTRGGLLFIALLFNAFQAFGEL-ASTMLGRPIIAKHRAFTFHRPGAL 617
                    9****************999.99********************6677777**************9999999.************************ PP

  ABC2_membrane  97 vlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkwlq 190
                     +a+++v+ +++ +q+lif++ivyf+ gl ++  +ff f+l+++  +l+++ +++  ++l+p+f+ a+ +a +++++l+l+sG++i +++ ++wl+
     KKY24186.1 618 WIAQIIVDTAFASIQILIFSIIVYFMCGLVRDagAFFTFVLFVITGYLMMTLFFRTAGCLCPDFDYAMKFAAIIITLLVLTSGYMIQYPNEQVWLR 713
                    ********************************9999*******************************************************88*** PP

  ABC2_membrane 191 wiaylnPltyavealrsnlf 210
                    wi+++n l  a+ +l++n+f
     KKY24186.1 714 WIYWVNALGLAFTSLMVNEF 733
                    ******************97 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.4
  ABC2_membrane  45 nsedglnrpgllffsvlflafsal 68 
                    n++d   ++g+++ ++ f+ f+++
     KKY24186.1 785 NKSDLWRNLGIIAALIAFFLFTNT 808
                    444444667888888877776554 PP

  == domain 3  score: 137.3 bits;  conditional E-value: 5.7e-43
  ABC2_membrane    2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsa 95  
                     qik++ kr+ l +wr+p++g ++r+++++++al+ g+ + +l++s   l++  +++f ++ l  ++l++v+p ++  r v++re +++ ys ++
     KKY24186.1 1185 QIKIVNKRTNLAFWRSPNYG-FTRFFNHVVIALLTGLTYLQLDDSRTSLQYRVFIIFQCTVLPALILAQVQPKYDLSRLVFYRESAAKAYSQFP 1277
                     99******************.9*********************9999999******************************************** PP

  ABC2_membrane   96 yvlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmp. 186 
                     +++++vl+e+p+s+l+a+ f++  y+l g++    r ++ +l++l+t +++++lg ++sal+ps   a++l + +++ + l++G+ ip++++p 
     KKY24186.1 1278 FAFSMVLTEMPYSVLCAIGFFFPLYYLPGFQSAspRAGYQFLIVLFTEIFSVTLGQMLSALTPSSFIAMLLNPPIIITFALFCGVTIPKPQIPg 1371
                     ********************************98888*******************************************************95 PP

  ABC2_membrane  187 kwlqwiaylnPltyavealrsnl 209 
                      w  w+++l P+t ++ ++++++
     KKY24186.1 1372 FWRAWLYQLDPFTRLIGGMVVTE 1394
                     6666************9998876 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   2.3e-18   1.8e-15       8     136 ..     204     356 ..     197     357 .. 0.89
   2 !   66.4   0.0   4.6e-21   3.6e-18       3     137 .]     888    1037 ..     886    1037 .. 0.92

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 2.3e-18
                 EETTSEEEEEESTTSSHHHHHHHHTTS...S--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.....................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagl...lkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.....................esd 82 
                  k+ge+v ++G+ G+G++t+lk++a++   ++  +Ge+l+   d+++  ++++r e  + ++++ + p+ltv+++                      ++
  KKY24186.1 204 AKPGEMVLVLGRPGSGCTTFLKVIANQrfgYTSVNGEVLYGPFDSDT-FKKRYRGEAVYNQEDDIHHPTLTVGQTlafaldtkspakrpvgmtktqFKE 301
                 689**********************984445669****999777777.8899******************************99999999988874334 PP

                 TC.HHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xx.xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 ee.iekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpt 136
                  + ++ +l+ ++++++++t+v+++  + +SgG+++rv++a+++++ +++  +D+ t
  KKY24186.1 302 -KvVDLLLKMFNIEHTRNTIVGNQFlRGVSGGERKRVSIAEMMVTSSTVCAWDNTT 356
                 .3599999*************9999****************************988 PP

  == domain 2  score: 66.4 bits;  conditional E-value: 4.6e-21
                  EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xx RF
    ABC_tran    3 nvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................es 81  
                  +v   +k+g+++a++G +GaGK+tLl +la   +     G+il+dgk+  +     +++  ++ +q + + p+ tvre                 e+
  KKY24186.1  888 DVFGYVKPGQLTALMGASGAGKTTLLDVLAARKNIgvIGGDILVDGKKPGT----AFQRGTSYAEQLDVHEPTQTVREAlrfsadlrqpfhvprsEK 980 
                  566679************************99887789*******988777....9***************************99999999987666 PP

                  HTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEE.EESTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
    ABC_tran   82 deeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpklll.lDEpta 137 
                   + +e++l+ l++++l+d v+++  s LS  +++rv +   l+ kp+lll lDEpt+
  KKY24186.1  981 YAYVEEVLALLEMENLADAVIGDPESGLSVEERKRVTIGVELAAKPELLLfLDEPTS 1037
                  666********************99*********************987549***96 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   2.5       5.5   4.3e+03      46      72 ..     646     672 ..     636     675 .. 0.84
   2 !   79.1   0.0   2.2e-25   1.7e-22       1      90 [.     746     833 ..     746     835 .. 0.97
   3 !   13.7   0.4   5.5e-05     0.043      30      75 ..    1449    1493 ..    1432    1494 .] 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.5
     PDR_CDR  46 lwrnfgiliaflifflalyllatelis 72 
                 l r+ g  + f++f ++ yl++t +++
  KKY24186.1 646 LVRDAGAFFTFVLFVITGYLMMTLFFR 672
                 568899999999999999999988776 PP

  == domain 2  score: 79.1 bits;  conditional E-value: 2.2e-25
     PDR_CDR   1 vPsgpgyenvseenrvCavvGavpGqeyVsGddYlelsfgyssshlwrnfgiliaflifflalyllatelisaekskgevlvfkrgkapk 90 
                 vP+gpgy++   e+++C+++G+++G++ +sG +Y+++sf+y++s+lwrn+gi+ a ++ffl+++  + el+++ +++ +++ + ++ +++
  KKY24186.1 746 VPYGPGYTD--IEHQACTLAGSTSGTDKISGLSYIKTSFSYNKSDLWRNLGIIAALIAFFLFTNTTLGELMKWGSGGRTITWYAKEDKER 833
                 8*******5..79************************************************************************99876 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 5.5e-05
     PDR_CDR   30 sGddYlelsfgyssshlwrnfgiliaflifflalyllatelisaek 75  
                  +G+++ e  +gy+  h+wr++gi  af+   l++ +la+ +++++k
  KKY24186.1 1449 TGSQFYE-PLGYNFVHRWRDLGIFAAFIGSNLVILFLASRYFNFNK 1493
                  6777777.89****************************99998775 PP

>> ABC_trans_N  ABC-transporter N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.1   4.5e-18   3.5e-15       2      81 .]      80     170 ..      79     170 .. 0.81

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 4.5e-18
  ABC_trans_N   2 Lartlsrqssssssssss..........e...sssedeeeedseFdlekwlknlreridrdgikprklGVvFknLtVeGvgsgadyqpTvgna 81 
                  L+r++sr+s+ s+++s +          e   ss+e ++ee+  +dle  l+  r++ +++gik +++GV+++nLtV G+g ++++++T+++a
   KKY24186.1  80 LEREFSRLSQISRKESMKkhakprakdlEkagSSTEASDEEP--WDLEDTLRGNRQADHEAGIKAKRIGVIWENLTVRGIGGTKNFVRTFPDA 170
                  899999984444433333577887765526667777777777..**********************************************986 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   3.7       1.4   1.1e+03     211     263 ..     544     598 ..     531     611 .. 0.69
   2 !   23.0  15.5   4.8e-08   3.8e-05     191     340 ..     604     804 ..     577     808 .. 0.83
   3 !    9.3  10.4   0.00071      0.56     212     312 ..    1285    1389 ..    1222    1399 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.4
  ABC2_membrane_3 211 lgdflvyllqlllilllafglgipfgnlglll....llfllfglayialgyllsslf 263
                      + +++ +ll+++++  ++++  +p + +g++     l++ l + a+ a+g l s++ 
       KKY24186.1 544 VVSWATSLLIAIVLGTVWLN--LPKTASGAFTrgglLFIALLFNAFQAFGELASTML 598
                      55666677777777777999..99998888777543444455556666665555555 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 4.8e-08
  ABC2_membrane_3 191 ikelqlvsgvsplqywlskilgdflvyllqlllilll...afglgipfgnlglll.llfllfglayialgyllsslfknsetaqilifivilll 280
                      +k++ ++   +p ++w++ i+ d + + +q+l++ ++   ++g  +   + ++++ l+++ ++l+++ ++   ++l+ + + a+ ++ i+i ll
       KKY24186.1 604 AKHRAFTF-HRPGALWIAQIIVDTAFASIQILIFSIIvyfMCG-LVRDAGAFFTFvLFVITGYLMMTLFFRTAGCLCPDFDYAMKFAAIIITLL 695
                      57777777.88999******************99885445888.444446666555999999************************99999989 PP

  ABC2_membrane_3 281 sgffgglfpledlpsalkwifsiiPffapglgllrlitgdplwe.................................................. 324
                       + +g+++  ++   +l+wi ++   +a+gl++++l+ ++ + +                                                  
       KKY24186.1 696 VLTSGYMIQYPNEQVWLRWIYWV---NALGLAFTSLMVNE-FGRidltcnsaylvpygpgytdiehqactlagstsgtdkisglsyiktsfsyn 785
                      99999998776666667766665...58888888888666.33356888888888899999999999999999999999999999999999999 PP

  ABC2_membrane_3 325 ...illsliilalfavvyl 340
                         ++++l+i a++++++l
       KKY24186.1 786 ksdLWRNLGIIAALIAFFL 804
                      9999999999999999987 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00071
  ABC2_membrane_3  212 gdflvyllqlllill.l....afglgipfgnlglllllfllfglayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalk 298 
                       + +  ++l+++ +++ l     f+        g+ +l +l+  + +++lg +ls+l+ +s  a++l +++i+++ +f+g+++p +++p++++
       KKY24186.1 1285 TEMPYSVLCAIGFFFpLyylpGFQ--SASPRAGYQFLIVLFTEIFSVTLGQMLSALTPSSFIAMLLNPPIIITFALFCGVTIPKPQIPGFWR 1374
                       444444555554444322223333..444477999999999999999********************************************9 PP

  ABC2_membrane_3  299 wifsii.Pffapglg 312 
                        +++ + Pf+ ++ g
       KKY24186.1 1375 AWLYQLdPFTRLIGG 1389
                       887744377766655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0057       4.5       1      93 [.     209     312 ..     209     323 .. 0.71
   2 !   15.0   0.0   2.6e-05      0.02       2      54 ..     899     952 ..     898     974 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0057
      AAA_33   1 lvllvGlpGsGKstlaerllkklg..........avllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkal.sagrnvildatnlsrrerarf 88 
                 +vl+ G pGsG +t+++ +++++           +   +sdt+++r++g+ + +++d ++  + + +++ ++a ++   a+r+v    t ++++  + +
  KKY24186.1 209 MVLVLGRPGSGCTTFLKVIANQRFgytsvngevlYGPFDSDTFKKRYRGEAVYNQEDDIHHPTLTVGQTLAFALDTKsPAKRPVGMTKTQFKEKVVDLL 307
                 6999***************98888866666444333446777999999988888888888877777666666654441466667777777776666666 PP

      AAA_33  89 lklar 93 
                 lk+++
  KKY24186.1 308 LKMFN 312
                 66665 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2.6e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrr.rlfgtdqqsktdytrvldr 54 
                 + l G++G+GK+tl++ l+++    ++  d+l + +  gt  q+ t y++ ld 
  KKY24186.1 899 TALMGASGAGKTTLLDVLAARKNIGVIGGDILVDgKKPGTAFQRGTSYAEQLDV 952
                 5689***************9999***********55555999999988886544 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00014      0.11       1      79 [.     898     968 ..     898     995 .. 0.67
   2 !    9.9   0.0   0.00076       0.6     259     296 ..    1028    1064 ..    1018    1069 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00014
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrle 79 
                 l++l G+ g+GK++LLd l   a      ++ + + +++   +k p+  + + ++++ ++ ++  ++q vr   ++  +
  KKY24186.1 898 LTALMGASGAGKTTLLDVLA--A-----RKNIGVIGGDILVDGKKPGTAFQRGTSYAEQLDVH-EPTQTVREALRFSAD 968
                 699****************3..2.....24555555555555555555555555555555555.555555555555555 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00076
      AAA_21  259 sllliDEpEngLHPkllrrllellkelsrngaQviltT 296 
                   ll++DEp +gL+ +    ++++l++l+   +Q il T
  KKY24186.1 1028 LLLFLDEPTSGLDSQSAFNIVRFLRKLAG-AGQAILCT 1064
                  69**********************99999.89987776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.014        11      15      62 ..     199     248 ..     190     278 .. 0.71
   2 !   13.1   0.0   0.00012     0.096      13      78 ..     887     955 ..     881    1065 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.014
      AAA_16  15 alervrsgrpelvllsGesGvGKsslvrellralekd...ggiflrgkcdq 62 
                  ++ v++++ e+vl+ G +G+G ++ ++ ++++  +    +g +l+g +d+
  KKY24186.1 199 DFRGVAKPG-EMVLVLGRPGSGCTTFLKVIANQRFGYtsvNGEVLYGPFDS 248
                 355566665.9****************999863221134434456666655 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00012
      AAA_16  13 lsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql........esaipysalaqalar 78 
                  ++++ v+ g  +l+ l G+sG GK++l++ l+   +k+ + ++ g+            +++++y+  +++ + 
  KKY24186.1 887 SDVFGYVKPG--QLTALMGASGAGKTTLLDVLAA--RKN-IGVIGGDILVDgkkpgtafQRGTSYAEQLDVHEP 955
                 5566656656..6899*************99984..444.4443333222221112233555665444444444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.15   1.2e+02      22      39 ..     207     224 ..     198     229 .. 0.83
   2 !   15.5   0.1   1.4e-05     0.011      22      43 ..     896     917 ..     890     918 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.15
      AAA_29  22 kgatlltGpsGsGKSTll 39 
                  +++l+ G+ GsG +T+l
  KKY24186.1 207 GEMVLVLGRPGSGCTTFL 224
                 4599***********997 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.4e-05
      AAA_29  22 kgatlltGpsGsGKSTllDAiq 43 
                  + t l+G+sG+GK+TllD ++
  KKY24186.1 896 GQLTALMGASGAGKTTLLDVLA 917
                 44899**************765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.077        60       1      25 [.     210     239 ..     210     273 .. 0.75
   2 !   14.3   0.0   5.9e-05     0.046       3      55 ..     901     955 ..     900    1030 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.077
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf....g 25 
                 +l+ G pG+G tt+ k +++   g+    g
  KKY24186.1 210 VLVLGRPGSGCTTFLKVIANQRfGYtsvnG 239
                 789***************998656665551 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 5.9e-05
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe..aldeskrlded 55 
                 l+G++G+GKttl + L+ r ++gv+ +d++ ++    + ++    + e++ + e+
  KKY24186.1 901 LMGASGAGKTTLLDVLAARKNIGVIGGDILVDGKKPGTAFQRgtSYAEQLDVHEP 955
                 89**************999888888888887777776666665544444444444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0       0.1        79      27      91 ..     201     256 ..     199     301 .. 0.74
   2 !   13.7   0.1   4.3e-05     0.034      28      55 ..     891     918 ..     878     921 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.1
      AAA_25  27 kgllpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlr 91 
                 +g+   ge +l+ G+pg+G tt++  +a          g + + +g Vly  ++ +   +++R+r
  KKY24186.1 201 RGVAKPGEMVLVLGRPGSGCTTFLKVIANQRF------G-YTSVNGEVLYGPFDSDT--FKKRYR 256
                 688889****************9876655444......5.45677888888888777..777776 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 4.3e-05
      AAA_25  28 gllpagelallaGapgtGKttlaldlal 55 
                 g++  g l++l+Ga+g+GKttl+  la+
  KKY24186.1 891 GYVKPGQLTALMGASGAGKTTLLDVLAA 918
                 67889******************99997 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         6   4.7e+03     100     122 ..     208     230 ..     197     237 .. 0.84
   2 !   16.4   0.0   8.1e-06    0.0063      93     124 ..     889     921 ..     853     934 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6
                  SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpe 122
                  ++++++G  G G +t++++++++
   KKY24186.1 208 EMVLVLGRPGSGCTTFLKVIANQ 230
                  788999***********999876 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 8.1e-06
                  HHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  93 lkellkd.ktsvlvGqSGvGKStLinallpele 124
                  +  ++k  ++++l+G SG+GK+tL+++l+ +++
   KKY24186.1 889 VFGYVKPgQLTALMGASGAGKTTLLDVLAARKN 921
                  5556666699******************98765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0       0.2   1.6e+02       2      41 ..     210     252 ..     209     273 .. 0.78
   2 !   12.9   0.1   0.00012     0.096       3      26 ..     900     924 ..     898     963 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.2
      AAA_28   2 ivitGgestGKTtlleaLaar..gypvv.pEaareileeklak 41 
                 + ++G +++G Tt l+ +a++  gy+ v  E+    +++ ++k
  KKY24186.1 210 VLVLGRPGSGCTTFLKVIANQrfGYTSVnGEVLYGPFDSDTFK 252
                 6789***************877999988788876666666555 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00012
      AAA_28   3 vitGgestGKTtlleaLaar.gypv 26 
                 +++G++++GKTtll  Laar ++ v
  KKY24186.1 900 ALMGASGAGKTTLLDVLAARkNIGV 924
                 799***************9965655 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.015        12       1      31 [.     213     243 ..     213     268 .. 0.86
   2 !    9.8   0.0    0.0013         1       2      59 ..     903     960 ..     902     971 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.015
                 EE-TTSSHHHHHHHHH.HHHTEEEEEHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklv.ekygfthlsaGdllr 31 
                 lG PGsG +t ++ ++ +++g+t ++ G++l+
  KKY24186.1 213 LGRPGSGCTTFLKVIAnQRFGYTSVN-GEVLY 243
                 699*********99985679*****9.99886 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0013
                 E-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTTS.HSSHHHHCTSHHHHHHHHHH CS
      AAA_17   2 GgPGsGKgtqceklvekygfthlsaGdllreeakrggl.akardemrklpleekkelqk 59 
                 G  G+GK+t+++ l+ + ++ ++  Gd+l +  k+g + ++  ++ ++l+  e  ++ +
  KKY24186.1 903 GASGAGKTTLLDVLAARKNIGVIG-GDILVDGKKPGTAfQRGTSYAEQLDVHEPTQTVR 960
                 99********************98.****988666655455555555665555544444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.26     2e+02     113     178 ..     376     505 ..     182     514 .. 0.73
   2 ?    2.9   0.2      0.17   1.3e+02     165     186 ..     829     850 ..     771     864 .. 0.71
   3 !   11.2   0.0   0.00049      0.38      20      39 ..     897     916 ..     890     918 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.26
      AAA_23 113 eideleqfisellgskki..ilnlilflgqer..................................feefelkdkke...................... 153
                 +i +++ f+s +  s++i  +++ +  ++q+r                                  +         +                      
  KKY24186.1 376 NIYKTTTFVSLYQASQNIyeQFDKVMVIDQGRqvyygptstareyfeglgflekprqttpdyltgcT---------Defereykpgrgpenaphspesl 465
                 3466667777666666556688888888888888888888887777766655555555544444443.........04444444447777777777777 PP

      AAA_23 154 ...............rleelekeleeledekkllekleqe 178
                                ++++++k+l++++++ + ++  ++e
  KKY24186.1 466 ieafkqsplsttlddEMADYRKQLQHEKEVYDDFQVAHRE 505
                 7777777888888889999999999999999887766443 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
      AAA_23 165 ledekkllekleqekekekele 186
                 + +e+k+l++++qek+++ + +
  KKY24186.1 829 EDKERKELNQKLQEKKQKRQRK 850
                 2333333333333333222222 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00049
      AAA_23  20 gltlItGpNGaGKTTildAi 39 
                  lt++ G  GaGKTT+ld +
  KKY24186.1 897 QLTALMGASGAGKTTLLDVL 916
                 599**************977 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.42   3.3e+02       6      28 ..     208     230 ..     204     250 .. 0.88
   2 !   11.1   0.0   0.00045      0.35       5      43 ..     896     925 ..     893    1054 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.42
      AAA_22   6 gilvvtGesGtGKTtllrrlleq 28 
                  +++v G +G+G Tt l+ +++q
  KKY24186.1 208 EMVLVLGRPGSGCTTFLKVIANQ 230
                 6899*************998887 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00045
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevv 43 
                  ++++++G sG+GKTtll  l+ ++         + +v+
  KKY24186.1 896 GQLTALMGASGAGKTTLLDVLAARK---------NIGVI 925
                 67899*************9999988.........55555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.033        25      17      40 ..     206     229 ..     198     237 .. 0.84
   2 ?    8.3   0.2    0.0022       1.7      18      40 ..     896     918 ..     892     942 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.033
      AAA_30  17 gdrvavltGpAGtGKttalkalre 40 
                 +  ++++ G++G+G tt lk++++
  KKY24186.1 206 PGEMVLVLGRPGSGCTTFLKVIAN 229
                 445999**************9975 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0022
      AAA_30  18 drvavltGpAGtGKttalkalre 40 
                  ++++l G+ G+GKtt+l +l++
  KKY24186.1 896 GQLTALMGASGAGKTTLLDVLAA 918
                 56999*************99865 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.66   5.1e+02     121     184 ..     302     372 ..      49     408 .. 0.74
   2 ?    2.1   0.0      0.14   1.1e+02      25      44 ..     897     916 ..     891     921 .. 0.89
   3 ?    8.0   0.0    0.0022       1.7     156     205 ..    1024    1073 ..     978    1087 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.66
                 HHHHHHHHCTT-STT...........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 121 kevsellesagiske...........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk 184
                 k v  ll++ +i+ +             SgGe++ v++a +    +v  + ++  D+    LD++    +a+ l+
  KKY24186.1 302 KVVDLLLKMFNIEHTrntivgnqflrGVSGGERKRVSIAEM----MVTSSTVCAWDNTTRGLDASTALDYAKSLR 372
                 33444444444444466666666666789999998887755....677777888888887777777777776666 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.14
                 SEEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAi 44 
                 ++ta++G+ G+GK+ lld +
  KKY24186.1 897 QLTALMGASGAGKTTLLDVL 916
                 589*************9965 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0022
                  CS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  156 vkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205 
                  +kp+ l +lDe  + LD +   +++++l++     Q i  ++++   +  
  KKY24186.1 1024 AKPELLLFLDEPTSGLDSQSAFNIVRFLRKLAGAGQAILCTIHQPNSALF 1073
                  689999**********************************9988655444 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.3     0.063        49     174     201 ..      86     113 ..      78     119 .. 0.86
   2 ?    6.7   0.0     0.005       3.9       6      42 ..     194     230 ..     191     248 .. 0.83
   3 ?    0.5   0.0      0.41   3.2e+02      11      41 ..     888     918 ..     882     928 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.063
                 EEEEXSGGGCCSCCHSXXHHHHCCTTSC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C 174 alsqLsravesredkrPvlsDLreSgsi 201
                  lsq+sr+   ++  +P   DL + gs 
  KKY24186.1  86 RLSQISRKESMKKHAKPRAKDLEKAGSS 113
                 59*********************99985 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.005
                 THHHHHHCTSBXTTXEEEEEEXTTSSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C   6 fkdLDkltsGlqkgdliiiAarpsmGktalalniaen 42 
                 f+ L ++ +  ++g+++++ +rp+ G t++   ia++
  KKY24186.1 194 FNILQDFRGVAKPGEMVLVLGRPGSGCTTFLKVIANQ 230
                 6667777777899*****************9999976 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.41
                 HHCTSBXTTXEEEEEEXTTSSHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  11 kltsGlqkgdliiiAarpsmGktalalniae 41 
                 ++++ +++g+l+ + + ++ Gkt+l   +a+
  KKY24186.1 888 DVFGYVKPGQLTALMGASGAGKTTLLDVLAA 918
                 55666899****************9877775 PP

>> RB_B  Retinoblastoma-associated protein B domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   0.00011     0.087      72     128 ..     475     527 ..     466     530 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00011
        RB_B  72 elsFkeiikaYrkqpqasskvyrsvllkkrekeeeekeeseeeergdiikFYNkvyv 128
                 ++++ + ++ Yrkq q++++vy +  + +re+++++    ++++ + +i FY ++++
  KKY24186.1 475 STTLDDEMADYRKQLQHEKEVYDDFQVAHREAQQKG----TSKSSVYLIPFYMQIWI 527
                 56778889********************98887554....478999******99997 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.024        19       2      22 ..     209     229 ..     208     233 .. 0.91
   2 ?    6.6   0.1    0.0086       6.7       3      21 ..     899     917 ..     897     922 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.024
                 CEEEEC-TTTCHHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqklal 22 
                 +v++ G++GsG Tt+l+ +a 
  KKY24186.1 209 MVLVLGRPGSGCTTFLKVIAN 229
                 689**************9985 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0086
                 EEEEC-TTTCHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqkla 21 
                  +l G++G GKTtLl  la
  KKY24186.1 899 TALMGASGAGKTTLLDVLA 917
                 6899***********8776 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.23   1.8e+02       3      25 ..     210     232 ..     208     238 .. 0.83
   2 ?    9.9   0.5   0.00066      0.51       3      36 ..     899     929 ..     897     935 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.23
                 EEEEESTTCCHHHHHHHHHCT-- CS
        cobW   3 tvltGflGsGKTtLlnhllenra 25 
                 +++ G +GsG Tt+l+ + ++r 
  KKY24186.1 210 VLVLGRPGSGCTTFLKVIANQRF 232
                 67889**********99987765 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00066
                 EEEEESTTCCHHHHHHHHHCT--SS-EEEEESS- CS
        cobW   3 tvltGflGsGKTtLlnhllenraglklavivNef 36 
                 t l G  G+GKTtLl  l ++   +++ vi +++
  KKY24186.1 899 TALMGASGAGKTTLLDVLAAR---KNIGVIGGDI 929
                 7899***********999865...7899998887 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.052        41       3      30 ..     209     236 ..     207     242 .. 0.91
   2 ?    5.7   0.1     0.014        11       6      23 ..     901     918 ..     897     922 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.052
   PduV-EutP   3 killiGkvgsGKttLtqalkgeelkYkk 30 
                  +l++G+ gsG tt  + + ++++ Y++
  KKY24186.1 209 MVLVLGRPGSGCTTFLKVIANQRFGYTS 236
                 5899******************999975 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.014
   PduV-EutP   6 liGkvgsGKttLtqalkg 23 
                 l+G++g+GKttL   l  
  KKY24186.1 901 LMGASGAGKTTLLDVLAA 918
                 9***********998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1228  (0.0684924); expected 358.6 (0.02)
Passed bias filter:                      685  (0.0382063); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 1.03u 0.35s 00:00:01.38 Elapsed: 00:00:00.50
# Mc/sec: 9068.51
//
Query:       KKY24187.1  [L=2152]
Description: putative abc transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-51  175.1   0.0      6e-29  100.9   0.0    3.2  2  Scramblase       Scramblase
    5.5e-47  159.7   0.0    2.8e-23   82.9   0.0    2.6  2  ABC_tran         ABC transporter
    1.3e-21   77.8   1.2    4.1e-05   23.5   0.0    4.5  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
      1e-20   74.2  42.6    4.9e-12   45.6  26.0    2.5  2  ABC2_membrane_3  ABC-2 family transporter protein
    7.2e-09   35.4   3.0     0.0025   17.3   0.0    3.7  4  SMC_N            RecF/RecN/SMC N terminal domain
    6.6e-08   32.2   1.7    0.00023   20.8   0.4    2.6  2  AAA_29           P-loop containing region of AAA domain
    4.6e-07   30.5   3.3     0.0057   17.2   0.5    2.4  2  AAA_23           AAA domain
    9.7e-05   22.3   0.5       0.14   12.0   0.2    2.4  2  RsgA_GTPase      RsgA GTPase
    0.00065   19.5   0.0       0.17   11.5   0.0    3.2  3  AAA_15           AAA ATPase domain
      0.003   17.8   0.4       0.45   10.8   0.0    2.9  2  AAA_22           AAA domain
     0.0032   17.2   2.4        2.2    8.0   0.0    3.0  4  AAA_30           AAA domain
     0.0037   16.9   0.3       0.39   10.3   0.1    2.4  2  AAA_27           AAA domain
     0.0085   16.5   0.1        6.1    7.2   0.1    2.6  2  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.043   14.5   0.0       0.21   12.3   0.0    2.3  2  DUF4162          Domain of unknown function (DUF4162)
      0.057   13.8   1.4        7.2    6.9   0.2    2.6  2  AAA_19           AAA domain
      0.078   12.6   4.1          2    8.0   0.2    2.5  2  SRP54            SRP54-type protein, GTPase domain
      0.081   12.2   0.2        3.9    6.7   0.1    2.6  2  Zeta_toxin       Zeta toxin
      0.093   13.0   1.2        8.3    6.6   0.6    2.4  2  AAA_28           AAA domain


Domain annotation for each model (and alignments):
>> Scramblase  Scramblase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.0   6.1e-32     6e-29      14     136 ..    1695    1850 ..    1685    1855 .. 0.83
   2 !   69.1   0.0   3.3e-22   3.2e-19     147     221 .]    1889    1991 ..    1874    1991 .. 0.97

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 6.1e-32
  Scramblase   14 aleiLleldsllveqqiellevllgfEtaNrYvvkdvagqkvavaaer....snalaRqllgthRpfvvkilDnlgnevltlkRpfkcis.c..... 100 
                  a++i l+ + l+v++qie+++v+lgfE+aNrYv+ d+ g++v+++ae+     ++laRq+++thRpf+++++D   +evl+ +Rpf++i+ +     
  KKY24187.1 1695 ATSI-LANSGLVVQRQIEMMNVFLGFEQANRYVILDARGNHVGYMAEHdggiGKSLARQMFRTHRPFTAHVFDRSAKEVLRFQRPFSWINsKigvyd 1790
                  3344.55599**************************************99999*************************************7367788 PP

  Scramblase  101 ........................lasvlqeaeieapegttiGevlqkwhlwrrkyelln 136 
                                           +   q++++   +++ iGe +q w ++rrky+l+ 
  KKY24187.1 1791 pvedstytsaqpmnttsgalipgvDPLNPQTSSLPISDMKIIGEAQQVWAPLRRKYNLFL 1850
                  88888877777666666666554333444555557789999***************9986 PP

  == domain 2  score: 69.1 bits;  conditional E-value: 3.3e-22
  Scramblase  147 gplvkid.cvldteFevktadgevvgsisrkwsGllrElftDadtyvvrFpl...........................dLdlklkavllgaafliD 215 
                   +++++d ++l+++F + +a+++ +gs++r+++G +rElftD++ y++r ++                            ++l+++av+l+ a+++D
  KKY24187.1 1889 TQFAAVDePFLSWDFSLLDAEKRLIGSVNRNFVGWGRELFTDTGVYALRMDSagltqeaqnrhlvsqtgktneiaatlpAMSLDQRAVMLATAVSVD 1985
                  688899999**************************************************************************************** PP

  Scramblase  216 fdyFer 221 
                  fdyF+r
  KKY24187.1 1986 FDYFSR 1991
                  ****97 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.2   1.6e-23   1.6e-20       1     135 [.     492     627 ..     492     629 .. 0.94
   2 !   82.9   0.0   2.8e-26   2.8e-23       2     136 ..    1267    1408 ..    1266    1409 .. 0.94

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 1.6e-23
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 ++n+s++  +g++++++G nG+GKSt l ++agl++ t+G+i+ld            +  +g +pq++ +++eltv e+             +++++i 
  KKY24187.1 492 VNNISFEALKGQILVLLGANGSGKSTTLDAIAGLTTITKGSIHLD--------YATGSGGFGLCPQQNVMWDELTVDEHvrvmnrvkctgkvDDKSQIM 582
                 589***************************************888........678899******************************99999999** PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEp 135
                 ++ls  +++++ + +     ++LSgGqk++++la+++  ++++  +DE 
  KKY24187.1 583 ALLSACDISHKSKARS----KTLSGGQKRKLQLAMMFTGDSTVCAVDEV 627
                 ********99777776....***************************96 PP

  == domain 2  score: 82.9 bits;  conditional E-value: 2.8e-26
                  EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTCH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxx RF
    ABC_tran    2 knvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...........esdeei 85  
                  ++v++ +++ge+ a++G+nGaGK+t ++l+ g   p    G+il+++ ++ + ++ ++r+ +gv+pq + ++  +tv+e+           + d ++
  KKY24187.1 1267 DDVTFGVSRGEVFALLGPNGAGKTTTISLIRGDILPsrRGGDILVEDVSIVK-NRAQARSYLGVCPQFDAMDT-MTVQEHldfyarirgvpDPDHNV 1361
                  89*******************************9998789******999999.9**************66655.55*******9999999999999* PP

                  HHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   86 ekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136 
                   ++++ +gl+  + + +      LSgG k++++l  al+ +p++lllDEp+
  KKY24187.1 1362 MEVMKAVGLQSYAFRMA----GALSGGNKRKLSLGIALMGNPSVLLLDEPS 1408
                  ***********999999....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   1.6   6.6e-07   0.00066       2      32 ..     505     535 ..     504     546 .. 0.74
   2 !   23.5   0.0   4.2e-08   4.1e-05     237     297 ..     601     657 ..     587     658 .. 0.87
   3 !    9.9   0.1   0.00057      0.57       2      20 ..    1279    1297 ..    1278    1328 .. 0.84
   4 !   18.4   0.0   1.5e-06    0.0015     235     300 ..    1379    1440 ..    1348    1443 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 6.6e-07
      AAA_21   2 nvliGpNgsGKSnLLdaldllarldrdvegl 32 
                  vl G+NgsGKS+ Lda+ +l  + + +++l
  KKY24187.1 505 LVLLGANGSGKSTTLDAIAGLTTITKGSIHL 535
                 69*******************8774444443 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 4.2e-08
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 lS G+kr l l+ ++  +    ++ ++DE+ +gL+P   r+++++l +++     +iltTH
  KKY24187.1 601 LSGGQKRKLQLAMMFTGDS---TVCAVDEVSSGLDPLSRRKIWDILLAERG-SRSIILTTH 657
                 79******88888888877...************************44444.66******* PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00057
      AAA_21    2 nvliGpNgsGKSnLLdald 20  
                   +l GpNg+GK++ + +++
  KKY24187.1 1279 FALLGPNGAGKTTTISLIR 1297
                  689************9995 PP

  == domain 4  score: 18.4 bits;  conditional E-value: 1.5e-06
      AAA_21  235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpl 300 
                    lS G kr l l  al   +   s+ll+DEp +g++ +  r  ++ l +    g  ++ltTHS +
  KKY24187.1 1379 GALSGGNKRKLSLGIALMGNP---SVLLLDEPSSGMDAASKRVMWRTLASVVP-GRSLVLTTHSME 1440
                  557***************999...**************9999999***99999.9*********75 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   8.6   1.7e-11   1.7e-08     135     344 ..     198     434 ..     143     435 .. 0.66
   2 !   45.6  26.0     5e-15   4.9e-12       8     344 ..     837    1208 ..     833    1209 .. 0.70

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.7e-11
  ABC2_membrane_3 135 qseatstsaninvestql....eeelsnvasflvgliliilifit...asfiavsiveEkesrikelqlvsgvsplq.......ywlskilgdf 214
                      q+   ++ ++++++s +     ee + ++   ++ ++ + +++ +   +++++  i++E+e+++ +l+ ++ + +++        ++++ l+  
       KKY24187.1 198 QNALPDQVQQYPYTSVSEarrkEEIRVKYMGGIIDILGVAFFIGVcgvIYQLTGLIASERETGMAQLLDCM-MPNTArwqpqwtRIIANHLSFD 290
                      22222233333333333333444444555555555444444333311144455579*************99.9877733333335555555555 PP

  ABC2_membrane_3 215 lvyllqlllilllafglgipfg.nlglllllfllfglayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsiiPff 307
                      ++y   ++++ +++ ++gi+   +  +l+++++l gl++++++ +  ++f+++    i+ +iv+l  ++++++ ++ ++  +++++++ ++P  
       KKY24187.1 291 IIYGPAWIVMAIIM-KVGIFTQtSAAILIVFHILAGLSLSSMSIFGAAFFRRAQLSGIISVIVSL--LLAVLAQVIHKTGTGTVAILSLLFPPM 381
                      55555556655553.33355552666677************************999999999998..55566666678899************* PP

  ABC2_membrane_3 308 apglgllrlitgdplwe....................illsliilalfavvylllal 344
                       ++ ++l ++     we                     +  +i+l++ ++v+ +l++
       KKY24187.1 382 NYTFFILLMAR----WErqdmktdlvkaapknpstlpGIAFWIFLIVQIIVFPMLGA 434
                      ******99995....666666667777888889988644788999999999877766 PP

  == domain 2  score: 45.6 bits;  conditional E-value: 5e-15
  ABC2_membrane_3    8 lllPiilvlllglifsnsve.d.......dentpi....avvdedn........sslsqqlv..............ealea.spsvelvyev 64  
                       +l+P++ ++l+ l+++  +               +     +v+e+n        s  +++                +  ++ ++ ve ++ v
       KKY24187.1  837 FLIPVVAAGLVTLFLKHFSRlGcsipdiiS----TssvySLVTESNinivagprSAITETALrrfasslwggggsdSGSANyTGLVESIHLV 924 
                       678888888877777766665333444432....2323477777766665555544444444444445555555443333423345588888 PP

  ABC2_membrane_3   65 dseeeakkalkngdidgilvipkgfskdllkgesatvtvli.nssnlnsskailnalns.llqqlnasalvlqseatstsaninvestql.e 153 
                       d+ +e+++ ++ + ++   v p gf         ++v ++  n++  ++ ++ +n l++ l++                s++ +++ ++  +
       KKY24187.1  925 DTVDEFNNYIDANYFQ---VTPGGFFV----EDGSPVFAWKgNGKIALA-TITQNFLDNiLTNV---------------SISNQYQAFDIpF 993 
                       8899998888887666...67888863....455666666645555442.34444477733333...............2222333333336 PP

  ABC2_membrane_3  154 eelsnvasflvgliliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdflvyllqlllilllafglgipfg..nlgllll 243 
                        + s+ a +l++++ + ++ ++a+f+++  + E+ ++++ l ++ gv++l +w + +l+df++ ++ + l+++++ g  ++    ++ ++++
       KKY24187.1  994 TSDSGKALQLIIYFGLASAVYPAFFALYPTI-ERLRNVRALHYSNGVRTLPLWSAYVLFDFIIVFVASGLATAIFRG--VSDVwfHISYVFV 1082
                       6677888899999999888888888887666.89999*************************************999..88877799***** PP

  ABC2_membrane_3  244 lfllfglayialgyllsslfkns.......etaqilifivilllsgffgglfpledlpsalkwifsiiPffapglgllrli......tgdpl 322 
                       +++l+gla++ +gy +s    ++       +++q++++++ +++ + +    p ++++s+++++ + i + +p+ +l+r +           
       KKY24187.1 1083 VLFLYGLASTLMGYIISLYAGSQlatfafaAAGQAVMLLLYFIAYLSIQTYAPANKIDSYVNVAHFAISLISPIGSLTRALfvalnvL---- 1170
                       ***********************66665544455555555555555555556699999*****9999999999999999995553330.... PP

  ABC2_membrane_3  323 we.................illsliilalfavvylllal 344 
                        +                 ++ ++++l++ +++++ll l
       KKY24187.1 1171 -SiacrnrafasnpssmtlYGGPIVYLIVQSALLFLLLL 1208
                       .25667777777788888788***************987 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.2   9.9e-05     0.099      23      44 ..     501     522 ..     490     533 .. 0.86
   2 !   17.3   0.0   2.5e-06    0.0025     111     197 ..     569     657 ..     547     673 .. 0.83
   3 ?    3.7   0.0     0.036        36      25      41 ..    1277    1293 ..    1253    1301 .. 0.71
   4 ?   -1.9   0.0       1.8   1.8e+03     119     183 ..    1357    1423 ..    1311    1452 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.9e-05
                 TSSEEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  23 sksftaivGpNGSGKsnlldAi 44 
                 + ++ +++G+NGSGKs  ldAi
  KKY24187.1 501 KGQILVLLGANGSGKSTTLDAI 522
                 5678899**************9 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 2.5e-06
                 EEETTEEE-HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 111 ykingkevtkkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivisl 197
                 +k  gk   k++++ ll+  +is +      +LSgG+k  + la++f       + ++ +De+ + LD   ++k+ ++l +++ +  +i +++
  KKY24187.1 569 VKCTGKVDDKSQIMALLSACDISHKskarskTLSGGQKRKLQLAMMFT----GDSTVCAVDEVSSGLDPLSRRKIWDILLAERGSRSIILTTH 657
                 66778888899999999999999888888889*******999999986....67889********************9998887777777776 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.036
                  SEEEEEESTTSSHHHHH CS
                  xxxxxxxxxxxxxxxxx RF
       SMC_N   25 sftaivGpNGSGKsnll 41  
                  ++ a++GpNG+GK+  +
  KKY24187.1 1277 EVFALLGPNGAGKTTTI 1293
                  56789********9866 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.8
                  -HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  119 tkkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaell 183 
                    ++v+e+++ +g+++       +LSgG+k  ++l +   +  +   ++ llDe  + +D++  + + + l
  KKY24187.1 1357 PDHNVMEVMKAVGLQSYafrmagALSGGNKRKLSLGIA--L--MGNPSVLLLDEPSSGMDAASKRVMWRTL 1423
                  5566666666666666566666689***9985555443..3..3444566888888888887766665555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.4   2.3e-07   0.00023      22      46 ..     501     526 ..     492     539 .. 0.83
   2 !    9.6   0.0   0.00076      0.76      13      39 ..    1267    1293 ..    1264    1297 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.3e-07
      AAA_29  22 kg.atlltGpsGsGKSTllDAiqalL 46 
                 kg + +l G++GsGKST lDAi+ l 
  KKY24187.1 501 KGqILVLLGANGSGKSTTLDAIAGLT 526
                 5668899***************8775 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00076
      AAA_29   13 dghtieidlkgatlltGpsGsGKSTll 39  
                  d+ t+ +++ +++ l Gp+G+GK+T +
  KKY24187.1 1267 DDVTFGVSRGEVFALLGPNGAGKTTTI 1293
                  556778886669************976 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.5   5.8e-06    0.0057      15      42 ..     495     525 ..     482     544 .. 0.86
   2 !   13.3   0.1   8.7e-05     0.087      18      39 ..    1274    1296 ..    1258    1298 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.8e-06
      AAA_23  15 idF...skgltlItGpNGaGKTTildAikla 42 
                 i F   +  + ++ G NG+GK+T ldAi   
  KKY24187.1 495 ISFealKGQILVLLGANGSGKSTTLDAIAGL 525
                 66666677899*****************865 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 8.7e-05
      AAA_23   18 sk.gltlItGpNGaGKTTildAi 39  
                  s+  ++++ GpNGaGKTT +  i
  KKY24187.1 1274 SRgEVFALLGPNGAGKTTTISLI 1296
                  44269*************99777 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.2   0.00014      0.14      95     135 ..     498     538 ..     475     542 .. 0.81
   2 !    8.0   0.0    0.0025       2.5      74     122 ..    1250    1299 ..    1213    1323 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
                  HHCTTSEEEEECSTTSSHHHHHHHHCTT-----S------- CS
  RsgA_GTPase  95 ellkdktsvlvGqSGvGKStLinallpelelktgevseklg 135
                  e+lk+++ vl+G  G GKSt ++a+++ +++  g++  +  
   KKY24187.1 498 EALKGQILVLLGANGSGKSTTLDAIAGLTTITKGSIHLDYA 538
                  57999********************9988888887766655 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0025
                   HTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase   74 algyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpe 122 
                    l +  l+ + k++ ++++++  ++  ++ +l+G+ G+GK+t i  ++++
   KKY24187.1 1250 GLRVIHLTKQFKKNLAVDDVTFGVSRgEVFALLGPNGAGKTTTISLIRGD 1299
                   333333444445556678888877766*****************999886 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00017      0.17      24      44 ..     500     523 ..     482     582 .. 0.83
   2 ?    2.3   0.1      0.11   1.1e+02      25      43 ..    1278    1296 ..    1260    1298 .. 0.87
   3 ?    1.1   0.0      0.26   2.6e+02     324     365 ..    1399    1438 ..    1395    1440 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
      AAA_15  24 e...ltvliGkNnsGKSsileald 44 
                     + vl G+N+sGKS+ l+a+ 
  KKY24187.1 500 LkgqILVLLGANGSGKSTTLDAIA 523
                 244499****************96 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.11
      AAA_15   25 ltvliGkNnsGKSsileal 43  
                  +  l G+N++GK++ + ++
  KKY24187.1 1278 VFALLGPNGAGKTTTISLI 1296
                  66799**********9988 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.26
      AAA_15  324 nvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365 
                  + +ll++EP        ++v++++l++++   +  +++tTHS
  KKY24187.1 1399 PSVLLLDEPSSGMDAASKRVMWRTLASVVPGRS--LVLTTHS 1438
                  66788999999999999***************7..******9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00045      0.45       5     103 ..     502     631 ..     499     671 .. 0.80
   2 ?    3.9   0.1     0.059        59       7      23 ..    1278    1294 ..    1273    1300 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00045
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee..........................erpevv.fvtlpsstsskdllrellralglelkaerlsse 76 
                  +ilv+ G  G+GK+t+l  ++   ++ +   +                          e+++v+ +v+++++ + k+   +ll+a + ++k+  ++s+
  KKY24187.1 502 GQILVLLGANGSGKSTTLDAIAGLTTITKGSIHldyatgsggfglcpqqnvmwdeltvdEHVRVMnRVKCTGKVDDKSQIMALLSACDISHKS-KARSK 599
                 689*******************99987776666999999999999999999999999999999999999999999999999999999999999.77777 PP

      AAA_22  77 ellealeqalrarav....ielliiDEaqh.l 103
                  l     + l+ +++      +  +DE+   l
  KKY24187.1 600 TLSGGQKRKLQLAMMftgdSTVCAVDEVSSgL 631
                 77744444444444446677777777766555 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.059
      AAA_22    7 ilvvtGesGtGKTtllr 23  
                  + ++ G+ G+GKTt++ 
  KKY24187.1 1278 VFALLGPNGAGKTTTIS 1294
                  67899*********986 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       7.4   7.4e+03      20      75 ..      81     136 ..      69     144 .. 0.77
   2 !    7.5   0.2     0.003         3      19      46 ..     503     530 ..     495     541 .. 0.82
   3 !    8.0   0.0    0.0022       2.2      16      39 ..    1274    1297 ..    1269    1374 .. 0.82
   4 ?   -3.7   0.1         8     8e+03      46      74 ..    1429    1457 ..    1416    1475 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 7.4
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiak 75 
                 v v +G  G   + ++  +++ ++a+g +v +l+ +++ A v   +l  ++s ia 
  KKY24187.1  81 VLVNNGFTGGDISRVIDDIAQPARASGVQVEILSQEEELAGVCVSSLRGTSSCIAA 136
                 45556777777788899999999999*******99999999877777777776665 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.003
      AAA_30  19 rvavltGpAGtGKttalkalreaweaag 46 
                 ++ vl G+ G+GK+t+l a++ + +  +
  KKY24187.1 503 QILVLLGANGSGKSTTLDAIAGLTTITK 530
                 5899****************98877665 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0022
      AAA_30   16 sgdrvavltGpAGtGKttalkalr 39  
                  s+  v +l Gp G+GKtt+++ +r
  KKY24187.1 1274 SRGEVFALLGPNGAGKTTTISLIR 1297
                  4556999*************9996 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 8
      AAA_30   46 ggrviglAptgkaAkvLaeelgieastia 74  
                  g+++++ +++ + A++La+ +gi as++ 
  KKY24187.1 1429 GRSLVLTTHSMEEADALANRAGIMASRML 1457
                  67888999999999999999999887664 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   0.00039      0.39      18      49 ..     494     525 ..     490     528 .. 0.89
   2 ?    4.0   0.0     0.034        33      19      44 ..    1269    1294 ..    1264    1299 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00039
      AAA_27  18 sldfsaeeadlhliyGpNEAGKstalrAisdl 49 
                 +++f+a + ++ +++G+N +GKst+l+Ai  l
  KKY24187.1 494 NISFEALKGQILVLLGANGSGKSTTLDAIAGL 525
                 678888889999****************9866 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.034
      AAA_27   19 ldfsaeeadlhliyGpNEAGKstalr 44  
                  ++f+ ++ ++  ++GpN AGK+t+++
  KKY24187.1 1269 VTFGVSRGEVFALLGPNGAGKTTTIS 1294
                  56666777777889*********986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0061       6.1      25      45 ..     503     523 ..     489     539 .. 0.87
   2 ?    6.3   0.0     0.012        12      23      51 ..    1275    1303 ..    1266    1351 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0061
      AAA_16  25 elvllsGesGvGKsslvrell 45 
                 ++++l G+ G+GKs+ +++++
  KKY24187.1 503 QILVLLGANGSGKSTTLDAIA 523
                 799**************9986 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.012
      AAA_16   23 rpelvllsGesGvGKsslvrellralekd 51  
                  r+e+  l G+ G GK++ +  ++  +  +
  KKY24187.1 1275 RGEVFALLGPNGAGKTTTISLIRGDILPS 1303
                  447899*************9999777766 PP

>> DUF4162  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00021      0.21       1      80 [.     681     760 ..     681     761 .. 0.81
   2 ?   -2.3   0.0       7.9   7.9e+03      62      81 .]    1560    1579 ..    1546    1579 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00021
                 E-HHHHHTTS.-SSEEEEE-------..---EEEE-TT..S-EEEEE-----------------EEEEEEEE---HHHHHHHH CS
     DUF4162   1 GtleeiKrsy.gknrieveadaeelleepgveeveeeg..gelelkledeeaanellkaltsgveirsFeeeePsLndIFiek 80 
                 Gt+ e+K+ +  + r+++ +++++ +  p + ev  e   ++ +  l+d++ a++  ++l ++  i  +++  P+++d+F+++
  KKY24187.1 681 GTPVELKHHLgSGYRVHIYNNVGQHA--PTCDEVPSERmyDQTVYNLKDSQEASKFVDKL-EREGIYDYQVSGPTIEDVFLKV 760
                 78888999985555666778888866..55777744444589******************.7778****************97 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.9
                  EEEEEEEE---HHHHHHHHH CS
     DUF4162   62 eirsFeeeePsLndIFiekv 81  
                    + +++ + +L+ +F+  v
  KKY24187.1 1560 GFEYYSVSQTTLDQVFLTIV 1579
                  467789999*******9876 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.2    0.0072       7.2       6      32 ..     498     524 ..     493     534 .. 0.82
   2 ?    5.0   0.1     0.029        28       9      29 ..    1275    1295 ..    1269    1318 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0072
      AAA_19   6 ealkekvllvtaGpGtGKTrvlkhiva 32 
                 ealk ++l++++  G+GK+++l +i  
  KKY24187.1 498 EALKGQILVLLGANGSGKSTTLDAIAG 524
                 388999****************98865 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.029
      AAA_19    9 kekvllvtaGpGtGKTrvlkh 29  
                  + +v++++++ G GKT+++  
  KKY24187.1 1275 RGEVFALLGPNGAGKTTTISL 1295
                  678999************976 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.6     0.014        14       3      24 ..     504     525 ..     502     535 .. 0.82
   2 ?    8.0   0.2    0.0021         2       3      19 ..    1278    1294 ..    1276    1298 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.014
                 EEEEEESTTSSHHHHHHHHHHH CS
       SRP54   3 villvGlqGaGKTttlaKLaal 24 
                 +++l+G +G+GK ttl  +a l
  KKY24187.1 504 ILVLLGANGSGKSTTLDAIAGL 525
                 789************9888865 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0021
                  EEEEEESTTSSHHHHHH CS
       SRP54    3 villvGlqGaGKTttla 19  
                  v++l+G++GaGKTtt++
  KKY24187.1 1278 VFALLGPNGAGKTTTIS 1294
                  789************96 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0039       3.9      18      50 ..     504     536 ..     489     539 .. 0.86
   2 ?    2.6   0.0     0.073        72      21      40 ..    1281    1300 ..    1272    1313 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0039
  Zeta_toxin  18 lillgGqpGAGKselaellkdelerqgnvvrld 50 
                 +++l G+ G+GKs+++++++  ++ +++ ++ld
  KKY24187.1 504 ILVLLGANGSGKSTTLDAIAGLTTITKGSIHLD 536
                 6677899*************9999999999987 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.073
  Zeta_toxin   21 lgGqpGAGKselaellkdel 40  
                  l G  GAGK+++++l++ ++
  KKY24187.1 1281 LLGPNGAGKTTTISLIRGDI 1300
                  55889*********998775 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.6    0.0083       8.3       3      20 ..     506     523 ..     504     539 .. 0.85
   2 ?    4.4   0.0      0.04        40       2      19 ..    1279    1296 ..    1278    1325 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0083
      AAA_28   3 vitGgestGKTtlleaLa 20 
                 v++G+ ++GK+t+l a+a
  KKY24187.1 506 VLLGANGSGKSTTLDAIA 523
                 89************9998 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.04
      AAA_28    2 ivitGgestGKTtlleaL 19  
                  ++++G+ ++GKTt+++ +
  KKY24187.1 1279 FALLGPNGAGKTTTISLI 1296
                  689***********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       981  (0.0547158); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.25u 0.33s 00:00:01.58 Elapsed: 00:00:00.54
# Mc/sec: 11891.64
//
Query:       KKY24188.1  [L=417]
Description: putative proteasome maturation ans ribosome synthesis protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-30  103.6   0.3    3.4e-29  101.2   0.0    2.2  2  PIN_6         PIN domain of ribonuclease
    1.1e-28   99.2   3.9    1.8e-28   98.5   3.9    1.3  1  NOB1_Zn_bind  Nin one binding (NOB1) Zn-ribbon like
     0.0019   19.1   2.6     0.0046   17.8   2.6    1.7  1  WRNPLPNID     Putative WW-binding domain and destruction box
     0.0049   16.7   2.1     0.0049   16.7   2.1    1.5  2  RFX5_DNA_bdg  RFX5 DNA-binding domain
  ------ inclusion threshold ------
      0.079   12.6   1.1       0.16   11.6   1.1    1.5  1  DUF2321       Uncharacterized protein conserved in bacteria (


Domain annotation for each model (and alignments):
>> PIN_6  PIN domain of ribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   0.0   9.4e-33   3.4e-29       1      89 []      19     110 ..      19     110 .. 0.98
   2 ?   -0.5   0.0       0.5   1.8e+03      76      84 ..     228     236 ..     211     246 .. 0.55

  Alignments for each domain:
  == domain 1  score: 101.2 bits;  conditional E-value: 9.4e-33
       PIN_6   1 lVlDagalikn..slsslqnlaeklyttpeVvaEirdkkarerlellpl.elevrePspesvkkvtefakktGDlsvLSktDievlALtyeL 89 
                 +VlD+++l+ n  +ls+l +++++++ tp+V++Eird++ar+r+e+++l +l++r+P+pesvk+v++fa++tGDl+vLS tDi+v+AL+y+L
  KKY24188.1  19 IVLDSSPLLLNtpPLSTLLSQCNEFVSTPQVISEIRDEEARTRVETTYLpFLTLRSPKPESVKFVKDFARRTGDLAVLSGTDIDVIALAYDL 110
                 79*******88899*********************************988****************************************98 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.5
       PIN_6  76 SktDievlA 84 
                 S+ Di+vl 
  KKY24188.1 228 STSDIKVLQ 236
                 444444443 PP

>> NOB1_Zn_bind  Nin one binding (NOB1) Zn-ribbon like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   3.9   4.9e-32   1.8e-28       1      72 []     266     337 ..     266     337 .. 0.98

  Alignments for each domain:
  == domain 1  score: 98.5 bits;  conditional E-value: 4.9e-32
  NOB1_Zn_bind   1 ikrvkswvlrChaCfkvtkdmtkkFCpkCGnktLkrvavsvdengelklhlkknfqlnlrGtkyslpkpkgg 72 
                   i++v++ +lrChaCf +tk+m+k+FC++CG++tL+rv+++++++ge+klhlkkn+q+n++G+++s+pkp +g
    KKY24188.1 266 ISNVRTMILRCHACFATTKEMNKQFCNRCGKPTLTRVTCTTNDRGEVKLHLKKNMQWNNKGNVFSMPKPGSG 337
                   789*****************************************************************9776 PP

>> WRNPLPNID  Putative WW-binding domain and destruction box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   2.6   1.3e-06    0.0046      26      70 .]     173     212 ..     162     212 .. 0.52

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.3e-06
   WRNPLPNID  26 ldseaeessegesvdedeeaeee.eeeeeeeedeedsgfngWitPs 70 
                 ++++a+ s+e+   +e++ea  + + +e ++ed +ds+  gWitPs
  KKY24188.1 173 EEDSAQTSQET---SEKTEAMAQpTVNE-DDEDGSDSD--GWITPS 212
                 22222233322...23333333335555.555788888..*****8 PP

>> RFX5_DNA_bdg  RFX5 DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   2.1   1.4e-06    0.0049      37     168 ..      89     228 ..      83     245 .. 0.72
   2 ?   -2.9   0.1       1.3   4.7e+03     110     154 ..     336     380 ..     333     392 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.4e-06
  RFX5_DNA_bdg  37 Rtaevpvseasgqdppakaakqdtedtasd........akRkRGRPRkksggsgernstpeksaaavdsaqssRlpretWgsgeesnsaggserpGp 125
                   Rt + +v   +  d  a a + ++e  + d         k   G+P  k   ++   s p  ++a +   +s+ l +     + e +sa+ s+++  
    KKY24188.1  89 RTGDLAVLSGTDIDVIALAYDLEIEKNGGDwrlrnapgQKHVNGKPPIKVAPEQSVVSEPTSAIAPAGPEESTGLSQAVGDLKIEEDSAQTSQETSE 185
                   667777777777777777777777777776111111112444566666666666666666666666666677777777777889************* PP

  RFX5_DNA_bdg 126 vgeaekgtvlaqgqedgavskggrepssrhakeaeDkiplvts 168
                     ea  + +++++ edg++s g   ps  + k+a+D++   +s
    KKY24188.1 186 KTEAMAQPTVNEDDEDGSDSDGWITPSNIKRKQAKDETGAASS 228
                   ************************************7654332 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.3
  RFX5_DNA_bdg 110 sgeesnsaggserpGpvgeaekgtvlaqgqedgavskggrepssr 154
                   sg+ +++ +g++  G  g   ++ +la++q + + ++  +e + +
    KKY24188.1 336 SGHSNQKWQGARDGGGKGGWGNHLILAEDQKEYVRARTTQERTKK 380
                   566666677777777777778888888888887777776665554 PP

>> DUF2321  Uncharacterized protein conserved in bacteria (DUF2321)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.1   4.4e-05      0.16      17      51 ..     279     312 ..     263     327 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.4e-05
     DUF2321  17 svnkkeelveeyCekcGektitkcpkCsteirGky 51 
                 ++ +++e ++++C++cG+ t+t++ +C+t+ rG+ 
  KKY24188.1 279 CFATTKEMNKQFCNRCGKPTLTRV-TCTTNDRGEV 312
                 677888999************987.7999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1061  (0.0591779); expected 358.6 (0.02)
Passed bias filter:                      628  (0.0350271); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.53
# Mc/sec: 2385.37
//
Query:       KKY24189.1  [L=365]
Description: putative trna-splicing endonuclease subunit sen2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-07   28.5   0.1    0.00061   19.4   0.1    2.3  2  tRNA_int_endo_N  tRNA intron endonuclease, N-terminal domain


Domain annotation for each model (and alignments):
>> tRNA_int_endo_N  tRNA intron endonuclease, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0   0.00033       5.9       8      29 ..      95     116 ..      87     135 .. 0.87
   2 !   19.4   0.1   3.4e-08   0.00061      32      56 ..     309     335 ..     296     342 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00033
                      TEEEESSHHHHHHHHHTTT-SE CS
  tRNA_int_endo_N   8 drvlvedeeaakrlyekgfYGk 29 
                      +++++ de+  + l e+gf+Gk
       KKY24189.1  95 SSIHITDEKTCRALWEMGFFGK 116
                      67899****************9 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 3.4e-08
                      CTSSEEEEHHHHHHHHHT.TSEEEE.T CS
  tRNA_int_endo_N  32 idepLqLslvEAlYLlek.Gklevv.k 56 
                      ++e L+Lsl+EA++L++  G+l++  +
       KKY24189.1 309 NQEHLELSLEEAFFLVYGlGVLKIFcD 335
                      6799*******************9744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1068  (0.0595683); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.52
# Mc/sec: 2130.19
//
Query:       KKY24287.1  [L=364]
Description: putative mitochondrial aaa atpase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-51  172.7   1.1    2.1e-50  171.6   1.1    1.6  1  DUF4050   Protein of unknown function (DUF4050)


Domain annotation for each model (and alignments):
>> DUF4050  Protein of unknown function (DUF4050)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.6   1.1   1.2e-54   2.1e-50       2     183 .]      63     253 ..      62     253 .. 0.78

  Alignments for each domain:
  == domain 1  score: 171.6 bits;  conditional E-value: 1.2e-54
     DUF4050   2 pfrfdspdsvssavtsnqslderkrkrrraleeemkwNeGlalWearRdaWtgartvrkkekkerepseaesasseesssss................e 84 
                 p+++ spd++++a++      ++krkr+r l+eem+ NeGl+++ +rR+aWtga +++ k+k++  p  +e ++s + +s+s                 
  KKY24287.1  63 PYKYQSPDEIAAALA------QKKRKRKRLLQEEMEYNEGLRVFHERRNAWTGAVSRKPKQKSKAAP--TEGSKSIS-QSNSlnfdfdfegssrgsraA 152
                 89999******9996......89999******************************99888888777..22222222.222257899999998866431 PP

     DUF4050  85 aleeqsaessssssasatattspas......seeseeeesvetlvPvappllppsnpirasItpasYpsiYsklvvqsktpsvpInLsdmikalVqgWk 177
                  + ++ + +ss +sa++t+++   +      + + +++ + ++l+P+ap llp +np+ra+Itp++Yp+iYsk+v+qs+tpsvpI+L+d+++a++qgWk
  KKY24287.1 153 -SPASASRASSPDSAASTEQH---QsaqfsrEPSPSPTIDIDPLIPIAPALLPRTNPVRAAITPSMYPTIYSKVVIQSLTPSVPIPLPDITNAIIQGWK 247
                 .22222222222222222222...23446766677889999********************************************************** PP

     DUF4050 178 adgeWp 183
                 ++g+Wp
  KKY24287.1 248 DEGNWP 253
                 *****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2751.03
//
Query:       KKY24288.1  [L=1055]
Description: putative cytoplasm protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-08   33.3   9.9    7.2e-08   31.6   3.0    4.1  3  Glyco_hydro_63  Glycosyl hydrolase family 63 C-terminal domai
  ------ inclusion threshold ------
      0.072   13.3   0.0       0.25   11.6   0.0    1.9  1  TTSSLRR         Type III secretion system leucine rich repeat


Domain annotation for each model (and alignments):
>> Glyco_hydro_63  Glycosyl hydrolase family 63 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.24   2.2e+03      92     115 ..     446     469 ..     424     475 .. 0.83
   2 ?   -1.4   0.0     0.085   7.7e+02     254     288 ..     579     611 ..     575     646 .. 0.66
   3 !   31.6   3.0     8e-12   7.2e-08     361     488 ..     721     897 ..     714     900 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.24
                     SEEHHHHHHHHHHHHHH-HHHHHH CS
  Glyco_hydro_63  92 RGFlWDeGFhqllilkwdvdltle 115
                         WD  Fh +++   d d++ +
      KKY24288.1 446 FFAAWDTAFHCIPLAMIDPDFAKK 469
                     4457************99998765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.085
                     HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  Glyco_hydro_63 254 DlrsWvalaakslksiaellgeeeekekyakteke 288
                     D   W+a+   ++ +ia  l ++ +   y++++++
      KKY24288.1 579 DSTGWMAFYCLCMLNIALELAKHRRI--YEDIASK 611
                     8889************9888776654..4444433 PP

  == domain 3  score: 31.6 bits;  conditional E-value: 8e-12
                     T-THHHHHHHHHH-TTTTEETTEEBSB-TTST...TTT-.....................TT-SSSS-B-HHHHHHHHHHHHHH-.......... CS
  Glyco_hydro_63 361 dsekleklldlikdpeelwsdyGlrslskkss...lygkrnteh................denYWrgpiWininylilsalkhys.......... 426
                     + ++lek+l+ + d+ e+ s++G+rslsk+++   + ++ n +                  ++ WrgpiW+ +n+l++++l +++          
      KKY24288.1 721 NRDRLEKILKRMLDETEFLSEHGIRSLSKHHEehpYSMEVNGQTfkvgyvpgdsdsglfgGNSNWRGPIWLAVNFLLVESLLRFYmfygnslqve 815
                     5679************************976422144555543211222222221222224568****************988887889999777 PP

                     ............--SS-.--HHHHHH....HHHHH.HHHHHHHH...HHHHTSS--SEE-TTT--EESSSS-TTGGGGHHHH CS
  Glyco_hydro_63 427 ............kvegpykekakeiy....keLrs.nlvnnivk...qyketGfvweqYddktGkgkgakeFtGWtslvvli 488
                                 +v+ + ++++++++    +e r+ n  n++++   ++k+  f++e +d  tG+g ga++  GWt l+  +
      KKY24288.1 816 cptgsgdymhlgHVAEEIQHRLQHLFvrgdDERRAvNSGNDLLDydpNWKDYLFFYEFFDGDTGRGLGASHQCGWTGLIAKL 897
                     7755555554444444446777777644422333324445565444489*****************************9876 PP

>> TTSSLRR  Type III secretion system leucine rich repeat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.8e-05      0.25      24      47 ..     386     410 ..     376     412 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.8e-05
                 XXX....--HHHHHHHHHHHHHTS- CS
     TTSSLRR  24 paeqga.qteeeYlaaWseWernap 47 
                 +a +g   ++++Y+ +W++W++  p
  KKY24288.1 386 QAFSGMlWCKQHYYFIWDQWANGDP 410
                 4444446799**********99666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1055 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.48
# Mc/sec: 6597.26
//
Query:       KKY24289.1  [L=619]
Description: putative tat pathway signal sequence [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-14   55.2   0.0    1.8e-14   54.5   0.0    1.2  1  DUF2236          Uncharacterized protein conserved in bacteri
    4.2e-10   39.9   0.0    4.2e-10   39.9   0.0    2.8  1  Eaf7             Chromatin modification-related protein EAF7
     0.0011   17.3   7.7     0.0015   16.9   7.7    1.2  1  Nop14            Nop14-like family
  ------ inclusion threshold ------
      0.063   13.7   7.1        1.5    9.2   4.0    2.6  2  RNA_pol_Rpc4     RNA polymerase III RPC4
      0.065   12.7  12.8       0.13   11.7  12.8    1.4  1  SDA1             SDA1
      0.098   12.0  16.3       0.15   11.3  16.3    1.2  1  BUD22            BUD22
       0.43    9.3   3.3       0.67    8.7   3.3    1.2  1  SAPS             SIT4 phosphatase-associated protein
       0.75    9.3  13.3      0.093   12.3   8.5    1.9  2  PPP4R2           PPP4R2
        1.1    7.3  19.1        1.8    6.6  19.1    1.3  1  DNA_pol_phi      DNA polymerase phi
          2    7.6  15.6        3.6    6.8  15.6    1.3  1  NOA36            NOA36 protein
        2.5    6.8   4.0        3.8    6.2   4.0    1.3  1  Nucleo_P87       Nucleopolyhedrovirus capsid protein P87
        3.8    7.2  10.8        2.2    8.0   7.0    2.0  2  RR_TM4-6         Ryanodine Receptor TM 4-6
        4.6    7.0   6.6        1.3    8.8   3.3    1.8  2  TFB6             Subunit 11 of the general transcription fact


Domain annotation for each model (and alignments):
>> DUF2236  Uncharacterized protein conserved in bacteria (DUF2236)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   1.3e-17   1.8e-14      40     198 ..     236     465 ..     214     483 .. 0.81

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 1.3e-17
     DUF2236  40 plrRllrTaqfiltvvy..gs.................................................geeaeaaaarVrllHaavrgtd......a 81 
                   rRl +T+qf+l v++  g+                                                  + ++++++rVrllH++vr+++      +
  KKY24289.1 236 VRRRLFETTQFVLEVTRsiGDimpvgmeeekegqtgeqqkdteinksspkpntpqsqasplsnktsnppsAHLGFKSSLRVRLLHSSVRRRIlqltqrH 334
                 449**************765589999999**************************************987777******************89998642 PP

     DUF2236  82 sg.....eryg.ainpedllwvhatfsasfl....raygrtvgpltaeeeeayyhewrrvgrllGvpdrll...patraafdayldemvlaelevdeea 167
                        +++g +in  + ++++ tfs++++     + g++   lt+ e   y+ +wr+++++l    +l+   +   + ++  ++  +++e++++  +
  KKY24289.1 335 -SsyyqtTEHGiPINTLHNIGTLGTFSTLLIyrslPRQGIR---LTRGEITSYISLWRLIAHYLTG-SALItsyFSHAESARLIMEVLLMTEVTPTRLS 428
                 .25788899**********************9666666666...********************63.55567777455555555776678888888888 PP

     DUF2236 168 relgdarll.......parpalpllrvitrgllppalr 198
                 r l+   +l       pa p +++l +  r++ + a+ 
  KKY24289.1 429 RTLTS-SILtsianhpPAYPTQRFLEASIRWCNGNAIS 465
                 88832.22257777778889999999888888877665 PP

>> Eaf7  Chromatin modification-related protein EAF7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   3.1e-13   4.2e-10      23     104 ..       1      78 [.       1      79 [. 0.85

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 3.1e-13
        Eaf7  23 mlaiverlnkpdkytllqkekpksgkhtsiediwekLktlYdLkaldelenekeeeeeeeekekee..kakeleekkdFeLPed 104
                 m+ai   + +       +  ++++++h+s+++iwekL ++YdLk lde+e+++ ++  ++++ + +  + ++ ++ + F+LP d
  KKY24289.1   1 MVAIKMYMDS------QHCVNVERDTHCSVQGIWEKLASWYDLKNLDEREDAVLNSPPQSPNPNIKprSLNSNSTFQPFSLPPD 78 
                 7888888888......7788999*****************************99998888877775555666777889999965 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   7.7   1.1e-06    0.0015     344     410 ..     163     214 ..     128     328 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.1e-06
       Nop14 344 aeeeeeededdfeedddlveseseeeeeeeeedeeeeedeeeeeeeeededdlsdleseeeeeedel 410
                 ae + +e+ed+  edd               ++ + +e+e+ee+eeee++ d+sd+e +e e+e+e 
  KKY24289.1 163 AETLADENEDEAAEDD---------------QEGSADEEEDEEDEEEEEKTDNSDDEGQEPEQEEEG 214
                 2112333333333332...............222222222222222223333333333333333333 PP

>> RNA_pol_Rpc4  RNA polymerase III RPC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   4.0    0.0011       1.5      25      85 ..     160     215 ..      72     224 .. 0.56
   2 ?    4.8   0.0     0.026        36      42      84 ..     265     309 ..     251     367 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0011
  RNA_pol_Rpc4  25 eddkseaesqsaekakaeeeskaekasgaeaeekkskkksskkkkkkkskalklkslpeGv 85 
                   + ++++ +++++++a++++++ ++     ++ee+++++++++k+++++++ +++++ +eG 
    KKY24289.1 160 KRKAETLADENEDEAAEDDQEGSA-----DEEEDEEDEEEEEKTDNSDDEGQEPEQEEEGG 215
                   222222222222222222222222.....22222222223333333333334444444444 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.026
  RNA_pol_Rpc4  42 eeeskaekasgaeaeekkskkksskkkkkkkskalklkslpe...G 84 
                   e+e ++ +++++++ +k+s+k++++++++++ ++++ +  p+   G
    KKY24289.1 265 EKEGQTGEQQKDTEINKSSPKPNTPQSQASPLSNKTSNP-PSahlG 309
                   222222222222222233333333333332222222211.223443 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  12.8   9.3e-05      0.13     106     174 ..     169     276 ..     132     309 .. 0.42

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.3e-05
        SDA1 106 vesdddseedseggwidvesdeeeieesdesedeeeeeeeeeekeekeeeeeeee............................................ 160
                 +++d+  e+d+eg+      d    ee+d +edeeeee+++++++e +e e+eee                                            
  KKY24289.1 169 ENEDEAAEDDQEGS-----AD----EEED-EEDEEEEEKTDNSDDEGQEPEQEEEgglgagrvvetlartggfnpkvvrrrlfettqfvlevtrsigdi 257
                 01111111222222.....11....1111.122222222222222222222222233344444445555555555555555555555555555555555 PP

        SDA1 161 .....eeeeeeeeeeeeee 174
                      eee+e +  e++++
  KKY24289.1 258 mpvgmEEEKEGQTGEQQKD 276
                 5554332333333332222 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  16.3   0.00011      0.15     147     270 ..     158     295 ..     118     314 .. 0.37

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
       BUD22 147 ekkkkkkkkkkkkkkeeeeeeesdkeeesedsedeekeeseddeeeeeededdedaeedeedeeaeerelaqydgllasddeded.............. 231
                 ++k+k+++ ++++++e++e +++++++e+ed+ed                                e+e ++ d+   sdde ++              
  KKY24289.1 158 ARKRKAETLADENEDEAAEDDQEGSADEEEDEED--------------------------------EEEEEKTDN---SDDEGQEpeqeeegglgagrv 221
                 1111111111111111111112222222222222................................222222222...222222222222224555555 PP

       BUD22 232 ........................................eyneetdeesseesdssdssesasesesessekkkkkkk 270
                                                          ++e++ ++ ++++d++ +++s ++ + +s+++     +
  KKY24289.1 222 vetlartggfnpkvvrrrlfettqfvlevtrsigdimpvgMEEEKEGQTGEQQKDTEINKSSPKPNTPQSQAS-----P 295
                 5555555555555666666666666666666666554442111111122222222222222222211111111.....1 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.3   0.00049      0.67     255     368 ..     160     330 ..     128     335 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00049
        SAPS 255 erlleel..tseeealedvsdeaskeesaesedltdkdedvsleesksakd................................................ 303
                 +r  e+l  ++e+ea ed ++ +++ee+ e+++ +++++d s +e ++ ++                                                
  KKY24289.1 160 KRKAETLadENEDEAAEDDQEGSADEEEDEEDEEEEEKTDNSDDEGQEPEQeeegglgagrvvetlartggfnpkvvrrrlfettqfvlevtrsigdim 258
                 222222233334555555553333333333333333333322222222222567789999999999999999999999999999999999999999998 PP

        SAPS 304 ......enkesdesesdtaeesseededdasseesa.laeeteeklrkkpvvGDlLKiklvelkilptiLdl 368
                       e++ +  ++++++e ++++ +++++++++  l+++t +  + +      L++ l+++ +   iL+l
  KKY24289.1 259 pvgmeeEKEGQTGEQQKDTEINKSSPKPNTPQSQASpLSNKTSNPPSAHLGFKSSLRVRLLHSSVRRRILQL 330
                 887764222222222222222223333333332222233333333345555566667777777777777666 PP

>> PPP4R2  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   8.5   6.8e-05     0.093     229     285 ..     154     212 ..      22     214 .. 0.57
   2 ?   -1.6   0.2       1.2   1.6e+03     175     203 ..     270     298 ..     246     315 .. 0.47

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.8e-05
      PPP4R2 229 eesaseseeiteekdesvkveekdddeeddee..dtdyveeeeddesedddeeeeeeee 285
                 ++ a++++++ + +de+ +  ++dd+e + +e  d++ +eeee+ ++ dd+ +e e+ee
  KKY24289.1 154 RTAAARKRKAETLADENEDEAAEDDQEGSADEeeDEEDEEEEEKTDNSDDEGQEPEQEE 212
                 22233333333333333333333333333333003332333333333333333333333 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
      PPP4R2 175 sqedsedvslvsipwvdekteselspfik 203
                   e+++d+   + ++ +++ +s+ sp ++
  KKY24289.1 270 TGEQQKDTEINKSSPKPNTPQSQASPLSN 298
                 22222222222222223333333333333 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  19.1    0.0013       1.8     634     682 ..     162     212 ..     154     235 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0013
  DNA_pol_phi 634 qaelf..edededeeddeeeeeeddeededseedddeeesdedeededded 682
                  +ae    e+ede  edd+e + +++e++ed+ee+++ ++sd++ ++ ++e+
   KKY24289.1 162 KAETLadENEDEAAEDDQEGSADEEEDEEDEEEEEKTDNSDDEGQEPEQEE 212
                  344442345555555555555555555555555555566666655554444 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  15.6    0.0026       3.6     235     300 ..     135     203 ..     122     213 .. 0.37

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0026
       NOA36 235 fgrqkqadgsddddddeedsdyda...ylkalasgddeddegdedddddddeedddeeedd..edeeeeee 300
                  gr++ ++++      + +s+ +a   ++ka + +d+++de++edd++ + +e++dee+++  e++++ ++
  KKY24289.1 135 KGRKSAGGAAGGRS--TRASGRTAaarKRKAETLADENEDEAAEDDQEGSADEEEDEEDEEeeEKTDNSDD 203
                 55555443333333..2222222200022222233444444444444333222222222220022222222 PP

>> Nucleo_P87  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   4.0    0.0028       3.8     392     440 ..     148     203 ..       4     206 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0028
  Nucleo_P87 392 easavlptekrkRrrarklqelssdede.......dssdekevDkekerkRRreeD 440
                 ++ a++ t+ +++r+a+ l + ++de          +++e+e D+e+e k    +D
  KKY24289.1 148 STRASGRTAAARKRKAETLADENEDEAAeddqegsADEEEDEEDEEEEEKTDNSDD 203
                 44556667778888888886666554443445555556666666666666655555 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   7.0    0.0016       2.2      81     140 ..     154     212 ..     128     231 .. 0.54
   2 ?    0.3   0.1      0.37   5.1e+02     113     147 ..     265     294 ..     239     318 .. 0.50

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0016
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXX CS
    RR_TM4-6  81 sptpelkkklaeeeeaeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeee 140
                  ++++ k+k ++   ++e +++e+++e +a e++d+e++e+eek+ + +++e +++e+ee
  KKY24289.1 154 RTAAARKRKAETLADENEDEAAEDDQEGSADEEEDEEDEEEEEKTDN-SDDEGQEPEQEE 212
                 22244444444333333333333333334434555555555554444.444444444444 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.37
                 XXXXXXXXXXXXXXX..........XXXXXXXXXX CS
    RR_TM4-6 113 kadaengekeekekekeeeekeseeeeeekkkkkk 147
                 +++ ++ge+++ ++ ++++ k ++ ++     ++ 
  KKY24289.1 265 EKEGQTGEQQKDTEINKSSPKPNTPQS-----QAS 294
                 222222222222222222222222222.....222 PP

>> TFB6  Subunit 11 of the general transcription factor TFIIH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.3   0.00092       1.3     105     150 ..     158     203 ..     115     229 .. 0.53
   2 ?   -3.0   0.1       3.8   5.3e+03     119     134 ..     264     279 ..     244     297 .. 0.50

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00092
        TFB6 105 tRvlvvevlereeeeeeeeedeeededeeeeeeeeeeeeeeedeed 150
                 +R + +e+l +e+e+e  e+d+e + deee+ee+eeeee++++++d
  KKY24289.1 158 ARKRKAETLADENEDEAAEDDQEGSADEEEDEEDEEEEEKTDNSDD 203
                 4444445555554444433333333332222222222111111111 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.8
        TFB6 119 eeeeeedeeededeee 134
                 ee+e ++ e+++d+e 
  KKY24289.1 264 EEKEGQTGEQQKDTEI 279
                 2221122222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1304  (0.0727313); expected 358.6 (0.02)
Passed bias filter:                      673  (0.037537); expected 358.6 (0.02)
Passed Vit filter:                       171  (0.00953762); expected 17.9 (0.001)
Passed Fwd filter:                        42  (0.00234257); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.97u 0.39s 00:00:01.36 Elapsed: 00:00:00.60
# Mc/sec: 3111.60
//
Query:       KKY24290.1  [L=519]
Description: putative biotin synthase-like protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.7e-119  398.3   0.0   6.2e-119  397.9   0.0    1.1  1  DUF3405   Protein of unknown function (DUF3405)


Domain annotation for each model (and alignments):
>> DUF3405  Protein of unknown function (DUF3405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  397.9   0.0  3.4e-123  6.2e-119      42     516 ..      34     514 ..      24     515 .. 0.88

  Alignments for each domain:
  == domain 1  score: 397.9 bits;  conditional E-value: 3.4e-123
     DUF3405  42 ekvdwrkvdWgelqerCleaNkeRFkeleekeakkekeakeaeekeekekeaekekkeeeeeeekeekkkkkRtAvvlRtwtgykyteedilnlRalis 140
                   vdw++ +W++lq++Cl++N++RF +      ++         +++++++ ++++ e  e   + +   + RtA+vlR ++g++yt++d+ n+R+ i+
  KKY24290.1  34 MPVDWENANWAHLQNQCLSQNQHRFPN-----PTRI--------SRANRFRLRDNDWEGFEP-LRVRPYATGRTAIVLRGYEGFRYTPSDMHNIRSFIM 118
                 579************************.....1111........122234444444444444.66778899**************************** PP

     DUF3405 141 ElsLksGGeYevhllvhvkdeel..piwadeetyqkvleeavpeEfrglatLwsekqmeslYpgleeesftrdlevhgvyrsaflplqlFaqqhpeydy 237
                 E+ L s ++Y+v+llv+vkde+   +i+++++ y+k+lee vp+Efr++a+L+++k++es+Yp++ e         h+v+ +a++plqlFaq +  +d+
  KKY24290.1 119 EAGLGSESDYAVFLLVDVKDEDGtrHIFHNTQDYDKALEELVPREFRDMAVLFDQKLLESWYPEIPE---------HSVFFQAYQPLQLFAQLFSGFDH 208
                 *********************98889****************************************4.........89********************* PP

     DUF3405 238 fWnwEmDvRytGhyyelldklsefakkqpRkglweRnerfYipsvhGswedFtqavekqteekgektvwGpvrvkev.kplgpkpptseeed..kyewG 333
                 +W++E+D + tG+   +ld+ls+fa+k+pRk+  eR++++Y+p+ hG +e+F+++++ + ++      wGpv+++++ +p+gp+pp +++e+  +++wG
  KKY24290.1 209 YWQIELDSKITGDSRIFLDALSNFARKEPRKQSIERSSYYYMPQGHGCYEEFRSRINDSLKG---GGFWGPVTIPDIpHPIGPEPPFQTPEEdlDFTWG 304
                 *************************************************************9...99******98874799*******997769***** PP

     DUF3405 334 vgEeADlitlnpifd.peettWvlrddvtgykneteakppRraaiitasrlSrrLLeamheetarkkhtmfsEmvpatvALhhGlKavyaphpvyv... 428
                 v+E+ADli +n ++  p ++ W +++++ g+k  t  ++pR+++++++ r+S +LL+++h++++++   + sE++p ++AL+hGlK v++php+++   
  KKY24290.1 305 VDEDADLILTNGFASiPATSYWPFKNWLSGFKLGT--ATPRFYSPVAMGRYSWNLLNTIHHAQVHQALALPSEATPLSFALYHGLKVVFPPHPWFHhpq 401
                 ********9998776478999**********6666..9**********************************************************777 PP

     DUF3405 429 ..drkwplealekvfnagrkg......asggartsvfgker......ehnlkgltwyynsefaeelyrrwlglkee.......ne.Ggeeeee...... 499
                   + + + + l+++fn++++       + g + ++             + ++g tw++  +f++e++++w+  + e       n+ Gge  ++      
  KKY24290.1 402 dqNAHLTIQDLNNLFNGNTTMlenakiNNGLSFGKA----MydpdgvYELFNGATWWWVPGFPGEVMKAWMRQDLEieienemNDgGGEGSQKglasvl 496
                 55578899********87766332222333333333....24444667889********************9999877777664436666666999999 PP

     DUF3405 500 .eeegrmclpsmllhpvK 516
                    +g+++ p m lhpvK
  KKY24290.1 497 rVVDGEVWAPIMALHPVK 514
                 99***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3727.06
//
Query:       KKY24291.1  [L=252]
Description: putative protein kinase regulator [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-57  192.6   2.9    4.6e-42  143.9   2.3    2.2  2  Mob1_phocein  Mob1/phocein family
  ------ inclusion threshold ------
      0.044   14.1   0.0       0.18   12.1   0.1    1.9  2  DUF1462       Protein of unknown function (DUF1462)


Domain annotation for each model (and alignments):
>> Mob1_phocein  Mob1/phocein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   8.7e-17   7.8e-13       1      41 [.      90     130 ..      90     131 .. 0.95
   2 !  143.9   2.3   5.1e-46   4.6e-42      61     165 ..     129     236 ..     128     240 .. 0.97

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 8.7e-17
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Mob1_phocein   1 eatlgsgdlkeavklPkgedlneWlavhvvdffneinllyg 41 
                   eatlgsg+l++avklP+ged neWlav++vdf+n+inll++
    KKY24291.1  90 EATLGSGSLRKAVKLPEGEDINEWLAVNIVDFYNQINLLFE 130
                   589***********************************975 PP

  == domain 2  score: 143.9 bits;  conditional E-value: 5.1e-46
                   xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Mob1_phocein  61 yeYlwade.evkkpvklsApeYidllmdwiesqlnd..lfpskagspfpknflkvvkkilkrlfrvyaHiYihHfeeiaeleleahlntcfkhfvlf 154
                   +eYlw+d+ ++kkp+k++ApeYi++lm w++s++++  +fps++g+pfpknf++++++i+krl+rvyaHiY+hH++ ++ l+le+hlnt+fkh+vlf
    KKY24291.1 129 FEYLWQDNeNFKKPTKMPAPEYIEHLMAWVQSNIDNeqMFPSRIGVPFPKNFQSTLRQIFKRLYRVYAHIYCHHYHVVVYLGLEPHLNTSFKHYVLF 225
                   69*****955*************************************************************************************** PP

                   xxxxxxxxxxx RF
  Mob1_phocein 155 vkeFkLidkke 165
                   ++e++L + k+
    KKY24291.1 226 IDEHQLASGKD 236
                   ******99887 PP

>> DUF1462  Protein of unknown function (DUF1462)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1     2e-05      0.18      12      49 ..     101     138 ..      97     169 .. 0.82
   2 ?   -1.7   0.0      0.39   3.5e+03       6      34 ..     165     193 ..     162     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2e-05
     DUF1462  12 CvnlPssketyeWleaalkrkypeqkleleyvDieeek 49 
                  v+lP  +++ eWl  ++   y++ +l +ey+  ++e+
  KKY24291.1 101 AVKLPEGEDINEWLAVNIVDFYNQINLLFEYLWQDNEN 138
                 599****************************8665554 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.39
     DUF1462   6 eviCasCvnlPssketyeWleaalkrkyp 34 
                 e++ +s +++P  k+  + l+   kr y 
  KKY24291.1 165 EQMFPSRIGVPFPKNFQSTLRQIFKRLYR 193
                 67778999999999999999999888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.50
# Mc/sec: 1525.87
//
Query:       KKY24292.1  [L=672]
Description: putative intracellular protein transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.5e-123  411.2   0.0   7.4e-123  410.8   0.0    1.2  1  Rgp1        Rgp1
     0.0018   18.7   0.1     0.0084   16.6   0.0    2.0  2  Arrestin_C  Arrestin (or S-antigen), C-terminal domain
     0.0078   16.3   0.0      0.018   15.1   0.0    1.6  1  Arrestin_N  Arrestin (or S-antigen), N-terminal domain
  ------ inclusion threshold ------
       0.03   13.9   0.0      0.062   12.8   0.0    1.4  1  Spo0M       SpoOM protein


Domain annotation for each model (and alignments):
>> Rgp1  Rgp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  410.8   0.0  1.6e-126  7.4e-123       1     416 [.     206     601 ..     206     602 .. 0.91

  Alignments for each domain:
  == domain 1  score: 410.8 bits;  conditional E-value: 1.6e-126
        Rgp1   1 tLlmgYvQisGsftlDgslineskfeevkrkavvg...gsggvvglekskrssgllgglgwgsiseslgellggnelstlkemresaesksiPllstpq 96 
                 +LlmgY+Qi++sf +Dgsl+++s+f+evkrk+++g   g ggvvg+ek k++ g+l+g+++gsiseslg+ll+ +++s+ kem++  +s+s+Pllstpq
  KKY24292.1 206 KLLMGYAQINASFAVDGSLVDQSPFDEVKRKGFMGgqgG-GGVVGVEKRKSTGGFLSGFNLGSISESLGGLLNPQDMSSSKEMKGVVSSRSVPLLSTPQ 303
                 69*******************************997633.9******989888********************************************** PP

        Rgp1  97 slLfvdLtLaPGEsksFefsfkLPkdLpPsyrgkaikisYsLviGtqrpggak..qqvksvevPirvlpsvnssgeqlghdLmspyillrdearvkevk 193
                 slLfvd++L+PGE++sF++sf++Pk+Lp++++gkaik+sY Lv+Gtq  ++a+  q+v+sv+vP+rv++ vns+ge lghdLm py++l+d+a + +++
  KKY24292.1 304 SLLFVDMELKPGEQRSFSYSFRIPKGLPATHKGKAIKVSYCLVVGTQFASNANspQKVRSVTVPLRVFSAVNSDGEVLGHDLMYPYVILKDTAITSSLD 402
                 ************************************************8888889******************************************** PP

        Rgp1 194 srkkssssskekkkskskkkseksesskedFlkyveelleneseskdieellspqlevqfeeeedseeneesrrksvvskesssvkeaidllilrsqla 292
                      + + +     +++ ++  + s ++dF +y + l++++ + ++ +++l++ + +              r +s   ++s+s ke i l+ilrs++a
  KKY24292.1 403 -----RPTLE-----TQPLAALPQISFTSDFSAYAQTLIDKQFRRQSSAATLDEAAMFAG------------RGPS---SNSDSPKELIRLAILRSNQA 476
                 .....22222.....22222223334578*************999999999999997752............2222...2334579************9 PP

        Rgp1 293 snlqks...yeIarngkrvAvltLskpaYrlgetitlvidfsdaeklkvyavtatLesfEkidpslalrseasikrvtrkvvaesseitlfarervsfk 388
                 ++ ++s   +eI+rng+ v+v++L++p +r+get+ +++df++a +l++ ++++ Le++Ek++pslalrs asi+r+t+kv+a++ e+tl+a+ r+ f+
  KKY24292.1 477 ADSERSpnrFEISRNGRYVGVVVLNRPSHRIGETVVASVDFASA-QLPTLSLRCMLETVEKVEPSLALRSVASINRATKKVHASQAENTLYAK-RAIFS 573
                 666666778**********************************9.8***********************************************.***** PP

        Rgp1 389 ltipksatpqFkTsgvqlkWllrleFvl 416
                 ++ip satp++ T+g++l W lr+eF +
  KKY24292.1 574 PSIPVSATPSLYTTGISLHWQLRFEFAT 601
                 **************************87 PP

>> Arrestin_C  Arrestin (or S-antigen), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.9e-06    0.0084      64     115 ..     291     352 ..     269     373 .. 0.72
   2 ?   -1.2   0.0      0.58   2.6e+03      85     112 ..     571     599 ..     497     616 .. 0.50

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.9e-06
                 EEEEE---..............B-TTEE.EEEEEEE.----B-----S---EEEEEEEEEEEEEEE CS
  Arrestin_C  64 aksdsvkv..............tsaakdkletevelqiPeeltpssarnvelikvsYklkvkltls 115
                  +s sv++              ++++++++   ++++iP+ l+ +   ++++ikvsY l v  ++ 
  KKY24292.1 291 VSSRSVPLlstpqsllfvdmelKPGEQRSFS--YSFRIPKGLPATH--KGKAIKVSYCLVVGTQFA 352
                 4444444456666667777755777888888..******8888877..9***********988877 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.58
                 E....----B-----S---EEEEEEEEEEEE CS
  Arrestin_C  85 l...qiPeeltpssarnvelikvsYklkvkl 112
                 +   +iP ++tps    + +i+ + +l++++
  KKY24292.1 571 IfspSIPVSATPSL--YTTGISLHWQLRFEF 599
                 12335677777776..677777777777765 PP

>> Arrestin_N  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.9e-06     0.018      86     139 ..     311     364 ..     279     370 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.9e-06
                 HHHH-TT.EEEEEE---TTS--SECSGEEEEEEEEEEEEECCCE--C.CCEEEEE CS
  Arrestin_N  86 kLpkGeh.afpFsfelPknlpsSfeGkaggvrYevkvtldrpwkidkkkkkvftV 139
                 +L+ Ge   f++sf++Pk lp +++Gka +v Y++ v  + + + +   +kv++V
  KKY24292.1 311 ELKPGEQrSFSYSFRIPKGLPATHKGKAIKVSYCLVVGTQFASNANS-PQKVRSV 364
                 567776427************************99876665554444.4455555 PP

>> Spo0M  SpoOM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.4e-05     0.062      79     148 ..     309     378 ..     300     384 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.4e-05
                 -EEE-TT-EEEEEEEEE--TT-----TT--EEEEEEEEESSS--EEEEEEEEE---HHHHHHHHHHHHTT CS
       Spo0M  79 aftiepgeereipfelelpletPitlggakvwleTeldiagavDpgDkDplevePlplqeavlealeelG 148
                  ++++pge+r++  ++++p   P t +g+++ ++  l +  +   + + p +v+  ++  +v++a+++ G
  KKY24292.1 309 DMELKPGEQRSFSYSFRIPKGLPATHKGKAIKVSYCLVVGTQFASNANSPQKVRSVTVPLRVFSAVNSDG 378
                 6899************************************999999999999999999999999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 4471.57
//
Query:       KKY24293.1  [L=401]
Description: putative inosine uridine-preferring nucleoside hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 2460.04
//
Query:       KKY24294.1  [L=527]
Description: putative ankyrin unc44 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-11   43.7   0.0    3.3e-08   34.0   0.0    2.9  3  Ank_2     Ankyrin repeats (3 copies)
      9e-08   31.8   0.2       0.13   12.9   0.1    5.0  5  Ank_3     Ankyrin repeat
    2.3e-05   24.9   0.1     0.0073   16.9   0.1    3.7  3  Ank_4     Ankyrin repeats (many copies)
    0.00092   19.5   0.0         10    6.6   0.0    4.1  4  Ank_5     Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0029        13      31      82 ..     269     327 ..     260     328 .. 0.75
   2 !   34.0   0.0   7.4e-12   3.3e-08       5      73 ..     371     454 ..     357     463 .. 0.81
   3 ?   -3.2   0.0       3.1   1.4e+04      55      68 ..     498     511 ..     473     521 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0029
       Ank_2  31 hyAakngnleivklLleh.......adndgrtpLhyAarsghleivklLlekgadinlk 82 
                 ++A+k+ ++ +++ +l+         d dg+t + + +++g++ +  lLl ++ad+nl+
  KKY24294.1 269 FLAIKKRDETALERILSTgqvranyCDPDGNTLMSFTVSEGSETLTGLLLRYKADPNLT 327
                 57888887777777776445664455699*********9999555556667799*9986 PP

  == domain 2  score: 34.0 bits;  conditional E-value: 7.4e-12
       Ank_2   5 akngnlelvklLl..egadpn...k.ngktaLhyAakngnleivklLleh.........adndgrtpLhyAarsghleivklLl 73 
                 a+++ +e +k+L   +  d n   k  g+ a+h+Aa + nl + ++L+e+         +d+ g+++Lh+A+ sg  ei+  Ll
  KKY24294.1 371 ALHDTYEGIKYLFerCPIDTNaeiKeVGWRAIHVAAAYRNLGTFRFLCEYqnpaehewfTDRRGWSILHIAVASGCREIIAELL 454
                 555556889****55555555644389************9999*****965666668877799************999999887 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.1
       Ank_2  55 tpLhyAarsghlei 68 
                 +++ +A+ sgh ei
  KKY24294.1 498 SVMDVAVYSGHGEI 511
                 55666777777665 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         4   1.8e+04      12      24 ..     115     127 ..     114     130 .. 0.73
   2 ?    3.0   0.0     0.047   2.1e+02       1      30 [.     297     325 ..     297     326 .. 0.91
   3 ?    3.8   0.0     0.027   1.2e+02       2      30 ..     363     391 ..     362     392 .. 0.87
   4 !    5.8   0.0    0.0059        26       2      26 ..     398     421 ..     397     426 .. 0.85
   5 !   12.9   0.1   2.9e-05      0.13       2      22 ..     434     454 ..     433     457 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4
       Ank_3  12 sgnleivkfLlen 24 
                 s++l+ +++L ++
  KKY24294.1 115 SQRLPAIQWLMRI 127
                 5677789999884 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.047
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G+t++ + ++ g+ ++  +Ll+ + ad+n
  KKY24294.1 297 DGNTLMSFTVSEGSETLTGLLLR-YKADPN 325
                 6999999999999999999****.*****9 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.027
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+t+ h  a+++ +e +k+L+e + +d n
  KKY24294.1 363 GWTIGHKTALHDTYEGIKYLFERCPIDTN 391
                 8899998899999999******9999988 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.0059
       Ank_3   2 GetpLhlAarsgnleivkfLlenkg 26 
                 G+ ++h+Aa + nl   +fL+e + 
  KKY24294.1 398 GWRAIHVAAAYRNLGTFRFLCE-YQ 421
                 8999**********77****99.44 PP

  == domain 5  score: 12.9 bits;  conditional E-value: 2.9e-05
       Ank_3   2 GetpLhlAarsgnleivkfLl 22 
                 G+++Lh+A+ sg+ ei+  Ll
  KKY24294.1 434 GWSILHIAVASGCREIIAELL 454
                 9**************766665 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.029   1.3e+02       6      39 ..     269     302 ..     265     318 .. 0.79
   2 ?   -1.8   0.0       1.1     5e+03      29      54 ..     358     382 ..     347     383 .. 0.69
   3 !   16.9   0.1   1.6e-06    0.0073       2      54 ..     399     454 ..     398     455 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.029
       Ank_4   6 hyaaisgrlelvrlLlekg.adinaqdnrsGetal 39 
                 + a+++ ++ +++++l++g +  n++d++ G+t++
  KKY24294.1 269 FLAIKKRDETALERILSTGqVRANYCDPD-GNTLM 302
                 56778888889*******7699****776.99987 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
       Ank_4  29 aqdnrsGetalhiAakrgnveilklL 54 
                   ++  G+t  h+ a++  +e +k+L
  KKY24294.1 358 V-ADTAGWTIGHKTALHDTYEGIKYL 382
                 3.467799988888888888888877 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 1.6e-06
       Ank_4   2 ltaLhyaaisgrlelvrlLlek.gadinaq.dnrsGetalhiAakrg.nveilklL 54 
                 ++a+h aa++ +l + r+L e+ ++  +++ ++r+G++ lhiA+  g +  i++lL
  KKY24294.1 399 WRAIHVAAAYRNLGTFRFLCEYqNPAEHEWfTDRRGWSILHIAVASGcREIIAELL 454
                 689*****************87455566667899**********998788777777 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.083   3.7e+02       2      43 ..     284     325 ..     270     329 .. 0.58
   2 ?   -1.9   0.0       1.1   4.8e+03      37      51 ..     351     365 ..     340     366 .. 0.78
   3 !    6.6   0.0    0.0022        10      16      38 ..     399     420 ..     384     425 .. 0.81
   4 !    5.6   0.0    0.0047        21      13      42 ..     431     457 ..     429     470 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.083
       Ank_5   2 lehgpadvnrldgggntpLhvAakygaadvvrlLlargadln 43 
                 l+ g+++ n+ d++gnt + + ++ g+ ++  lLl + ad+n
  KKY24294.1 284 LSTGQVRANYCDPDGNTLMSFTVSEGSETLTGLLLRYKADPN 325
                 444555556666666666655555555555555555555555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.1
       Ank_5  37 argadlnltdsrGlt 51 
                 ++++ +n+ d  G+t
  KKY24294.1 351 MEPELWNVADTAGWT 365
                 78999*****99998 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0022
       Ank_5  16 gntpLhvAakygaadvvrlLlar 38 
                 +  ++hvAa y+++  +r+L+++
  KKY24294.1 399 W-RAIHVAAAYRNLGTFRFLCEY 420
                 4.89****************944 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.0047
       Ank_5  13 dgggntpLhvAakygaadvvrlLlargadl 42 
                 d++g ++Lh+A+  g+ +++ +Ll   + +
  KKY24294.1 431 DRRGWSILHIAVASGCREIIAELL---VMA 457
                 444559*****************9...444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3406.95
//
Query:       KKY24295.1  [L=537]
Description: putative mfs alpha-glucoside transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-77  261.6  14.3    1.5e-77  261.4  14.3    1.0  1  Sugar_tr  Sugar (and other) transporter
    8.8e-10   38.0  38.9    1.2e-09   37.6  30.6    2.5  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.11   12.1   0.2       0.11   12.1   0.2    2.0  2  DUF2244   Integral membrane protein (DUF2244)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.4  14.3   2.6e-81   1.5e-77       5     452 .]      62     512 ..      58     512 .. 0.93

  Alignments for each domain:
  == domain 1  score: 261.4 bits;  conditional E-value: 2.6e-81
                 HHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH.....HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS CS
    Sugar_tr   5 aalggllfgYdtgvigafltllkfaknfglsksksskee..ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkns 101
                  +l  l++gYd  ++g+ + +++f ++fg+++  +s e   ++++++++  + ++G ++ s+ +g+++dr+G +k+ll a++l++   ++ ++ +   s
  KKY24295.1  62 FCLPNLIIGYDPTILGTLVGIPEFRRRFGYEHPPGSGEYvlAASWTSAFNYAPIIGFLVASIWGGWCVDRYGPRKTLLGATILSLGTLLIEVLGE---S 157
                 5566799*************************999888888999**********************************99988876666666666...9 PP

                 -TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHH CS
    Sugar_tr 102 vevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl.nktsnadgwrillglqlvpallllilllflPESPrylv 199
                   v++vg +l+G+  G + vl P yisEi p  lRg+  s+++la ++G ++++++  g+ n+t++ + +++++  +++++++++++++++PE+P++lv
  KKY24295.1 158 AAVIFVGDLLTGLLTGSFPVLGPAYISEILPVCLRGMGLSCNNLAQVLGSFIGIGILRGTeNRTDK-WAYKVPFITEYAFPIIFIVGGFLAPETPWFLV 255
                 9***********************************************************777777.******************************** PP

                 HTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH......HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HHHHHH CS
    Sugar_tr 200 ekgkeeeakevlaklrgeedadrelaeekdsleaeqeee.kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks..llvtii 295
                 ++g++eea ++l++   +ed+d  la +k+++  e+e + +a++   ++  t+ +r+l++++  ++q+l+Gin    y +++fe +g+++   +  +++
  KKY24295.1 256 KRGRYEEAAKSLKRTGYSEDVDNTLAHMKETILLEDEVSkSATYLDCFRG-TNCRRTLTCAMAYSGQFLCGINLASSYCTYFFELAGVTTNqaFDLSLG 353
                 **************9999*************9888777776777777777.469*************************************99999*** PP

                 HHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHH CS
    Sugar_tr 296 vgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavav 394
                 +  + +v  +++++l+  +GRR  ++  +++ +++++++g    l ++++++a ++  ++++lf +++++g+gp+++vl++El  +++R+k+l ia +v
  KKY24295.1 354 LFGLGVVGNLISWPLMTIWGRRGGYISTCCVTTLLMFLIG-FLGLAPSSNNGAMYAKSIMLLLFNFVYNIGLGPIVYVLIAELPNTRIRGKTLGIACFV 451
                 ***************************************9.44444444479999999***************************************** PP

                 HHHHHHHHHHHHHHHHCHHH...T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 395 nwlanflisllfpiiteaig...ggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                   + +++i+   p+++++ +   g+++ ++fagl ++++++ ff +pe kgrt+ee++ lf
  KKY24295.1 452 PHILSIAITAGLPYAMSTAEanwGAKTAFLFAGLSIIVLVWAFFYLPESKGRTFEELDILF 512
                 ***************999988889********************************99876 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6  30.6     2e-13   1.2e-09      34     344 ..     104     451 ..      56     460 .. 0.64
   2 !    8.8  20.2   0.00011      0.68      38     180 ..     352     503 ..     324     518 .. 0.73

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 2e-13
       MFS_1  34 igllltl...yalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsa 128
                 +++  ++     +g++vas+ +G+ +dr+G+r++ll + +l++ +ll+ ++   +  +++v+ +l+Gl +g++  +g a+i+++ p   rg+++++ ++
  KKY24295.1 104 ASWTSAFnyaPIIGFLVASIWGGWCVDRYGPRKTLLGATILSLGTLLIEVL-GESAaVIFVGDLLTGLLTGSFPVLGPAYISEILPVCLRGMGLSCNNL 201
                 666555544466799******************999999888888444446.555559***************************************** PP

       MFS_1 129 gfslGailg.pllgg.......llasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee......................kgt 191
                 +  lG+ +g  +l g       +             +++f i+ iv+ +++    ++l+ + + ++  ++ ++                       +  
  KKY24295.1 202 AQVLGSFIGiGILRGtenrtdkW-----AykvpfiTEYAFPIIFIVGGFLAPETPWFLVKRGRYEEAAKSLKRTgysedvdntlahmketilledeV-- 293
                 *********44555555444443.....233333366667777777777666444555444444444444444457778777777666666643221.. PP

       MFS_1 192 gpaplvp....awkallkdp...vlw.illialllfffgfsglltllplylqevlgls...glllaglllallalvgailallagrlsdrlgr.....r 274
                       +     +  ++  +     + ++++ +  f +g+++++++ + +  e  g +   + + ++  l+l++l++ ++ l++  l++ +gr      
  KKY24295.1 294 ------SksatYLDCFRGTNcrrT-LtCAMAYSGQFLCGINLASSYCTYF-FELAGVTtnqA-FDLS--LGLFGLGV-VGNLISWPLMTIWGRrggyiS 380
                 ......022222333333331112.1345555555555555555555554.56666665532.4444..44444433.333444444444444111111 PP

       MFS_1 275 rrlllallllllaalglallavtssavllll...vlvliGf.glgfvfpsllalasdlappeeagtasglfnta 344
                 +  + +ll +l+++lgla+ ++        +   +l+l+ f       p++ +l+++l  ++ +g+ +g++ ++
  KKY24295.1 381 TCCVTTLLMFLIGFLGLAPSSNNGAMY---AksiMLLLFNFvYNIGLGPIVYVLIAELPNTRIRGKTLGIACFV 451
                 245555555555555555555554444...35559999999788888**********************98665 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00011
       MFS_1  38 ltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllf..a..ss.......lwlllvlrvlqGlgagalfpagaaliadwfpkeergraig 124
                 l+l++l  +v++l+  +l++ +Grr  ++ ++ ++++l++l++++  a  s+       + +ll++ ++  +g   l p++++lia++ + + rg+ +g
  KKY24295.1 352 LGLFGL-GVVGNLISWPLMTIWGRRGgYISTCCVTTLLMFLIGFLglApsSNngamyakSIMLLLFNFVYNIG---LGPIVYVLIAELPNTRIRGKTLG 446
                 444444.5788888888888888888888888888888855555343344223444443778**********9...59********************* PP

       MFS_1 125 llsa...gfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperk 180
                 ++       s+++  g + +   a +++g   +f+++++  ++++  + ++++ ++++ +
  KKY24295.1 447 IACFvphILSIAITAGLPYAMSTAeANWGAKTAFLFAGLSIIVLV--W-AFFYLPESKGR 503
                 *99977778888888877777777688888888888777777773..3.44445554444 PP

>> DUF2244  Integral membrane protein (DUF2244)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9   1.3         3   1.8e+04      32      48 ..     109     125 ..     101     129 .. 0.58
   2 ?   12.1   0.2   1.9e-05      0.11      15      68 ..     456     510 ..     453     526 .. 0.82

  Alignments for each domain:
  == domain 1  score: -4.9 bits;  conditional E-value: 3
     DUF2244  32 laGawpvlpFaglevla 48 
                 +  + p+++F++  +++
  KKY24295.1 109 AFNYAPIIGFLVASIWG 125
                 45566666666666554 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 1.9e-05
     DUF2244  15 lllalalvslvialafllaGawpvlpFaglevlalalafrvs.arhardrEeitl 68 
                  ++++a++  ++++a +  Ga   ++Fagl +++l++af +    ++r +Ee+ +
  KKY24295.1 456 SIAITAGLPYAMSTAEANWGAKTAFLFAGLSIIVLVWAFFYLpESKGRTFEELDI 510
                 6899999999999*******************99999875540557777888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 3259.05
//
Query:       KKY24296.1  [L=347]
Description: putative aldo keto [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.7e-71  238.5   0.0    9.9e-71  238.3   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.3   0.0   5.5e-75   9.9e-71       2     293 ..      16     325 ..      15     326 .. 0.96

  Alignments for each domain:
  == domain 1  score: 238.3 bits;  conditional E-value: 5.5e-75
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE....--SSSTTSSSS-HHHHHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv....dlrdaeiksglskeniresleesl 94 
                   + lG w    +  +++e  +  l++a+eaGinffDtAe+Y +g++e+llG+a+k+ ++kr++++i+tK+    +++  +  ++ls+++i+e    sl
    KKY24296.1  16 ISLGSWLTYAG-HVPDENNFSCLQTAYEAGINFFDTAESYEDGKAEILLGKAIKQFGWKRQNLVISTKLffgeGGSSVNEVQSLSRKHIIEGMLHSL 111
                   78899977765.9***********************************************************999999******************* PP

                   HHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT.-HHHHTTHHHHHHHTT-EE CS
  Aldo_ket_red  95 krLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynll.releeegllelckkkgvpl 186
                   +rL++dyvDl++ Hr dp++p +eev++a+++l+ +Gk+ ++G+S+++ e++ +a    ++ + + +++ q +ynll r++ e+++++ +   g+++
    KKY24296.1 112 ERLQLDYVDLVYAHRHDPDTP-MEEVVRAFNHLINAGKAFYWGTSEWPSERIHEAnliaQRLGLIGPAMEQPKYNLLwRHRVESEYARIYDVWGLGI 207
                   *********************.************************************9999*********************************** PP

                   EEBSTTGGGTTGTTTSS---SSSCCC-------...........TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHH CS
  Aldo_ket_red 187 iaysplggGlltgkyqseedkedkeprkdlkrd...........ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqled 272
                    ++spl +G+ltgky+++ + ++  ++++  +d           +++ ++ +++++l +la++ g ++aq +l+++l+++ v+++i+gas++eq+ +
    KKY24296.1 208 TNFSPLDMGILTGKYNDSIPAGTRFADSV--DDyiqmtvgkygdDEVTQKITKVKALTSLAESIGATMAQFSLAWCLKNNHVSSLIIGASRPEQVLE 302
                   ********************996433333..33699************************************************************* PP

                   HHGGGG-..---HHHHHHHHHHH CS
  Aldo_ket_red 273 nldalel..klseeevaeldell 293
                   n++al++  +++e++++++de++
    KKY24296.1 303 NIRALDFvhRITEDMMKAVDEIV 325
                   *****99899**********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2381.11
//
Query:       KKY24345.1  [L=605]
Description: putative stromal membrane-associated protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-40  136.9   0.8    4.5e-40  136.4   0.8    1.2  1  ArfGap    Putative GTPase activating protein for Arf


Domain annotation for each model (and alignments):
>> ArfGap  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.4   0.8   2.5e-44   4.5e-40       2     115 ..      15     125 ..      14     127 .. 0.96

  Alignments for each domain:
  == domain 1  score: 136.4 bits;  conditional E-value: 2.5e-44
                 HHHHHHCCSCCCCB-TTT.-SBS--EEETTTTEEE-HHHHHHHCCS.TTT--EEETTTS---HHHHHHHHHTCHHHHHHHHTTTC-TTTSG-TTCGHHH CS
      ArfGap   2 kalkellkepenkvCaDC.gakeptWaslnlgvflCieCsgvHrslgvhiskvrsltldkwedeelellkalgNkkaneileaklpkeekrskssskek 99 
                 + +k+llk ++nkvCaDC ++k+p+Was+nlg+f+Ci+Csg+Hr +g+his+v+s++ld w+de+l+ + ++gN++an+++e+kl + + +    s+ k
  KKY24345.1  15 NTIKQLLKIESNKVCADCkRNKHPRWASWNLGIFICIRCSGIHRGMGTHISRVKSVDLDAWTDEQLASVLKWGNARANKYWESKLAPGHVP----SEAK 109
                 6799**************8899***************************************************************999999....999* PP

                 HHHHHHHHHTCHTTCC CS
      ArfGap 100 reefirakYeekkfae 115
                 +e+fir+kYe+k++++
  KKY24345.1 110 IENFIRTKYESKRWVM 125
                 *************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.52
# Mc/sec: 3520.76
//
Query:       KKY24346.1  [L=494]
Description: putative oxidoreductase fad nadbinding [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-08   33.6   0.0      1e-07   32.1   0.0    1.8  2  Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
  ------ inclusion threshold ------
      0.056   13.2   0.0        1.6    8.6   0.0    2.5  2  DUF2635         Protein of unknown function (DUF2635)


Domain annotation for each model (and alignments):
>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.66   5.9e+03      65      81 ..       5      21 ..       2      22 .. 0.80
   2 !   32.1   0.0   1.1e-11     1e-07       4      85 ..      85     177 ..      82     180 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.66
                    EEEETTGSEEEEEEEEE CS
  Putative_PNPOx 65 lflddelgrgvrieGta 81
                    l +d e++r+v++ Gt 
      KKY24346.1  5 LAIDLEQRRRVKLFGTM 21
                    5678889******9985 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 1.1e-11
                     HHHHHHHHSSEEEEEEEETTSEEEEEEEEEEEETTT...........TEEEEEEETTSHHHHHHHHH-EEEEEEEETTGSEEEEEEEEEEEES CS
  Putative_PNPOx   4 elreflaeskavvlATvdedGrPnvspvllkagdgr...........dgivfatnadsrklrnleenprvallflddelgrgvrieGtaelvs 85 
                      +++++++++++++++ ++d   ++ ++++++g+ r             + +++n+  ++l+nl+  pr++ll+ d+e+g  + i+G+ +++ 
      KKY24346.1  85 GAADLISKADLFFISSSNHDKDMDCNHRGGPPGFVRiasndkdgavlCWPEYSGNRLYQTLGNLQVSPRAGLLIPDFETGDVLYISGETRVLA 177
                     57899*************************************9988888889999999******************************99986 PP

>> DUF2635  Protein of unknown function (DUF2635)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00017       1.6       1      23 [.     150     172 ..     150     174 .. 0.89
   2 ?    1.8   0.0     0.023   2.1e+02      32      42 ..     447     457 ..     443     459 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00017
     DUF2635   1 vkPkaGlkVRdPetgelLpaeGe 23 
                 v P+aGl ++d etg++L   Ge
  KKY24346.1 150 VSPRAGLLIPDFETGDVLYISGE 172
                 67***************987776 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.023
     DUF2635  32 lRRlkdGDvve 42 
                 +RR+  GDv +
  KKY24346.1 447 HRRITKGDVLD 457
                 7********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 3922.25
//
Query:       KKY24347.1  [L=825]
Description: putative atp-dependent rna helicase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-20   73.0   0.1    5.8e-20   71.6   0.1    1.7  1  HA2          Helicase associated domain (HA2)
    4.4e-13   49.6   0.0    9.5e-13   48.5   0.0    1.6  1  Helicase_C   Helicase conserved C-terminal domain
    4.8e-12   46.1   0.0    1.1e-11   45.0   0.0    1.6  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    3.4e-06   26.9   0.0    5.9e-06   26.2   0.0    1.4  1  DEAD         DEAD/DEAH box helicase
    0.00011   22.4   0.0    0.00031   21.0   0.0    1.7  1  AAA_22       AAA domain
     0.0006   19.0   0.1     0.0011   18.2   0.1    1.3  1  T2SSE        Type II/IV secretion system protein
     0.0029   18.1   0.0     0.0069   16.9   0.0    1.6  1  ABC_tran     ABC transporter
     0.0083   15.8   0.1      0.071   12.9   0.0    2.4  2  AAA_29       P-loop containing region of AAA domain
  ------ inclusion threshold ------
       0.04   14.3   0.3       0.16   12.3   0.0    2.1  2  AAA_16       AAA ATPase domain
      0.052   12.5   0.0      0.084   11.8   0.0    1.2  1  AAA_10       AAA-like domain
      0.055   12.7   0.0       0.17   11.1   0.1    1.8  2  Zeta_toxin   Zeta toxin


Domain annotation for each model (and alignments):
>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.1   3.5e-23   5.8e-20       1     108 []     585     676 ..     585     676 .. 0.84

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 3.5e-23
         HA2   1 AlelLvalgALdee.gnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeeeeeekakkkrkeeekarrklah 98 
                 Al  L +l+AL+++ g++T++G k+a+lPlsprl+++Llaa+ +   +++evi+i++alsve+ifl+ ++ee +e      +a+++        r+l +
  KKY24347.1 585 ALLSLLQLSALAPStGKITDIGLKLARLPLSPRLGRVLLAATSY--SVVPEVIDIISALSVESIFLSTTTEETTE-----LAATAR--------RELFR 668
                 67889******9988**************************777..***********************876443.....234444........44444 PP

         HA2  99 kdaegDhltl 108
                 ++  gDhltl
  KKY24347.1 669 RE--GDHLTL 676
                 55..999997 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   5.8e-16   9.5e-13      12     109 ..     398     522 ..     385     524 .. 0.84

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 5.8e-16
                 HTTTTSEEEEEESSHHHHHH.HHHHHHHT.........TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH... CS
  Helicase_C  12 leeeggkilifvntidrlek.vklllekk.........gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv... 97 
                 +e   g+il+f++ ++++e+ ++l ++           ++++++l + lpq  ++ ++e   +g+++v+++t++ae+++++p++++Vi+++  +     
  KKY24347.1 398 KEPLPGDILVFLTGQETVENlLSLCHQ-YamnlppnvpKLSILPLFAALPQAAQQTVFEPTPRGHRKVILSTNIAETSVTVPGIRYVIDCGKHKRKqfr 495
                 5556799***********965333322.23556777889******************************************************554566 PP

                 ...............HHHHHHHTTSSS CS
  Helicase_C  98 ...............tsyiqriGRtgR 109
                                +s+ qr+GR+gR
  KKY24347.1 496 srlsldsllvkpiskSSARQRSGRAGR 522
                 778899999999999***********9 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   6.5e-15   1.1e-11       2      76 ..     747     817 ..     746     823 .. 0.93

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 6.5e-15
                  HHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHH CS
  OB_NTP_bind   2 raillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawL 76 
                   ++ l ++yp  ar +p ++ y+t ++++ v+ihpsS+l+      + e ++y+e+v t++ y+r+++a++  w+
   KKY24347.1 747 LKAFLTAFYPSTARLVPDGS-YRTISGNQTVAIHPSSTLFG---RGKVEAIMYNEFVYTNRAYARGVSAVQLNWV 817
                  578999*************9.*******************8...599************************9997 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   3.6e-09   5.9e-06      13     173 ..     140     309 ..     127     312 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 3.6e-09
                 TTCEEEEEESTTSSHHHH.HHHHHHHHHHHS........TTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHHHTTCSEE CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  13 gggdvlvaaeTGsGKTla.flipvlqivyet........kgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskldngvdiv 101
                 g++ +l+ +eTGsGK++   +i v ++ +++        ++k g  + i eP r  a   ++++ + + + ++ +  +   g + r + s+   +++i 
  KKY24347.1 140 GKDALLLVGETGSGKSTQvPQILVNEQWAQRktvtidgkETKVGGCIAITEPRRVAAISLARRVAEEMGTpLGSSSAASQVGYSVRFDTSTS-PSTKIK 237
                 34467799*******765156666666655599*9*997788888999*******9999999998777754664444333345555555555.66**** PP

                 EEEHHHHHH.HHHCTSSHCTTEEEEEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HHH CS
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
        DEAD 102 vgtpgrldd.llstgklnlsqvrflVlDEadrlldq..gfsdfinrilnqlpqitcdgklqrqvivlSATlp.kdv 173
                 + t g+l++ ll++    l++ + + +DE+++   +      f++r+l + ++    ++l+  v+v+SAT+  + v
  KKY24347.1 238 FLTEGMLLQeLLRDPW--LKEYSAVCVDEVHERGVNvdLILGFLKRLLDSQNEGRGGQPLK--VVVMSATADmEMV 309
                 *********5555555..*************999885566677777777776555555555..*******985555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.9e-07   0.00031       5     124 ..     141     296 ..     137     306 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.9e-07
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee........erpevvfvtlpsstsskdllrellralglelka.......................er 72 
                 +  l+++Ge+G+GK+t + ++l +  ++a+ ++        +  +++ +t p      +l+r++++++g +l +                       + 
  KKY24347.1 141 KDALLLVGETGSGKSTQVPQILVNE-QWAQRKTvtidgketKVGGCIAITEPRRVAAISLARRVAEEMGTPLGSssaasqvgysvrfdtstspstkiKF 238
                 66899***************99985.89999999**9988888888899999999*************************************9999988 PP

      AAA_22  73 lsseell.ealeqalraravielliiDEaqhlrs...eealeeLrsllnl.....srkgvq 124
                 l++  ll e+l++ + + +   ++ +DE++       + +l +L++ll+      + ++++
  KKY24347.1 239 LTEGMLLqELLRDPWLKEYS--AVCVDEVHER-GvnvDLILGFLKRLLDSqnegrGGQPLK 296
                 88888988889999999988..********96.3336778888888877655544444444 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   6.5e-07    0.0011      63     170 ..      74     181 ..      32     203 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 6.5e-07
       T2SSE  63 seerplqdarlpekgvrlrvvllPvvagealviRkksakeltlddlgaeealk......ekiaevlrkavrerglilvsGgTgsGKttllyallkeink 155
                 + ++ l+d++lp     l+v   P  ++++ + R++s+ + + ++l ++++         ki+e lr++   +  +l+ G TgsGK+t +  +l   + 
  KKY24347.1  74 DGKNTLIDGSLP---SPLQVKDQPPQQTKQGSSRDRSSLHRKAQELLVTRRALpvfsqaGKIRESLREP--GKDALLLVGETGSGKSTQVPQILVNEQW 167
                 568899999999...788888999999999999999988889999998887776777779999999999..899999************9665544444 PP

       T2SSE 156 sderivtvEDpvEiq 170
                  +++ vt+ D  E++
  KKY24347.1 168 AQRKTVTI-DGKETK 181
                 45888888.556665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   4.3e-06    0.0069      14      51 ..     144     182 ..     136     208 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.3e-06
                 EEEEESTTSSHHHHHHHHTTSS--.SEEEEEETTCEGGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllkp.teGeilldgkdlke 51 
                 + +vGe+G+GKSt +  ++ ++++ +  ++++dgk++k 
  KKY24347.1 144 LLLVGETGSGKSTQVPQILVNEQWaQRKTVTIDGKETKV 182
                 679**********997777777765999******99886 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.84   1.4e+03      33      41 ..      74      82 ..      67      84 .. 0.80
   2 !   12.9   0.0   4.3e-05     0.071      23      39 ..     142     158 ..     131     170 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.84
      AAA_29 33 sGKSTllDA 41
                 GK Tl+D 
  KKY24347.1 74 DGKNTLIDG 82
                699999995 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4.3e-05
      AAA_29  23 gatlltGpsGsGKSTll 39 
                 +a ll+G++GsGKST +
  KKY24347.1 142 DALLLVGETGSGKSTQV 158
                 489************65 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.9e-05      0.16      19      63 ..     136     182 ..     131     267 .. 0.78
   2 ?   -1.7   0.1         2   3.3e+03      72     107 ..     658     715 ..     634     762 .. 0.43

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.9e-05
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrell..ralekdggiflrgkcdql 63 
                 +r+++  ++ll+Ge G+GKs+ v ++l  +++ +++ +++ gk ++ 
  KKY24347.1 136 LREPGKDALLLVGETGSGKSTQVPQILvnEQWAQRKTVTIDGKETKV 182
                 55666689***************776644688888888888888877 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2
      AAA_16  72 laqalareellrqllde...........aesaeleawrekleeala.........................a 107
                 la ++ r+el+r ++d+           +e++             +                         +
  KKY24347.1 658 LAATA-RRELFRREGDHltllatvqayvSENS-------------NrrawcekrfvshramqavmdvrkqlQ 715
                 45555.55666666666333333333322222.............122222222222223333333333330 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.2e-05     0.084      23      79 ..     143     198 ..     125     209 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.2e-05
      AAA_10  23 asliiGdlGnGKSvlakllvlyisllggkaliiDpkkerekfketlpeiakkinvvt 79 
                 a l++G++G GKS  +  + ++ + ++ k + iD k+ +     ++ e ++++  ++
  KKY24347.1 143 ALLLVGETGSGKSTQVPQILVNEQWAQRKTVTIDGKETKVGGCIAITE-PRRVAAIS 198
                 3499******************************99886655555555.45555555 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.8   4.5e+03      92     118 ..      72      98 ..      70     101 .. 0.78
   2 ?   11.1   0.1    0.0001      0.17      13      53 ..     138     179 ..     128     182 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.8
  Zeta_toxin  92 iengyniivegtlrspdvvkklaealk 118
                 +e g n +++g l sp +vk++  +  
  KKY24347.1  72 TEDGKNTLIDGSLPSPLQVKDQPPQQT 98 
                 68999**********999888655544 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0001
  Zeta_toxin  13 qerPklillgGqpGAGKselaellkdele.rqgnvvrldpDd 53 
                 +  ++++ll+G +G+GKs+    +  + + +q++ v++d+ +
  KKY24347.1 138 EPGKDALLLVGETGSGKSTQVPQILVNEQwAQRKTVTIDGKE 179
                 5567899***********9999988887889******99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (825 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 5547.13
//
Query:       KKY24348.1  [L=223]
Description: putative 60s ribosomal protein l10 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-44  149.5   0.1    6.3e-44  149.2   0.1    1.1  1  Ribosomal_L16  Ribosomal protein L16p/L10e


Domain annotation for each model (and alignments):
>> Ribosomal_L16  Ribosomal protein L16p/L10e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.2   0.1   3.5e-48   6.3e-44       1     132 []      12     166 ..      12     166 .. 0.97

  Alignments for each domain:
  == domain 1  score: 149.2 bits;  conditional E-value: 3.5e-48
                    HXSSXXBSSSXXSSTSXX.XSXXXXXESX...........EEEEESSXEEEEHHHHHHHHHHHCTCCCCTSXC...EEXXSXXXXEEEEE-..... CS
  Ribosomal_L16   1 pkrkkyrKsrkryirgvs.tkgtklefgd...........ygLvalekgqltaealeaariainrylkkkrgk...klwirvfphhpvtkk..... 76 
                    +k+k+y+Ksr  ++rgv+ +k++++++g+           +++v++e++ql++ealeaari +n+yl+k+ gk   +l++r++p h+++++     
     KKY24348.1  12 CKNKPYPKSR--FNRGVPdPKIRIFDLGRkranvdefpfcVHMVSNEYEQLSSEALEAARISANKYLVKNAGKegfHLRVRAHPYHVIRINkmlsc 105
                    89********..************************************************************9*********************** PP

                    SS-TTTSSSS....XEEEEEEEEEXSSCEEEEE.TTXXXSHHHHHHHHHHHHTSSSXEEEE CS
  Ribosomal_L16  77 agedRmgkGk....Gkpegwvarvkigqiifei.kagvneeiakealrraasKlpiktkiv 132
                    ag+dR+++G+    Gkp+g+varv+igqi++++   + n++ia ealrr  +K+p+++ki+
     KKY24348.1 106 AGADRLQTGMrgawGKPNGTVARVNIGQILLSVrTRDANKAIAIEALRRSMYKFPGRQKII 166
                    *********************************74446*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1489.40
//
Query:       KKY24349.1  [L=108]
Description: putative 60s ribosomal protein l30 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-24   84.3   0.0    4.1e-24   84.1   0.0    1.0  1  Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 famil


Domain annotation for each model (and alignments):
>> Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.0   2.3e-28   4.1e-24       2      94 ..      12     104 ..      11     105 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.1 bits;  conditional E-value: 2.3e-28
                     HHHHHHHHHHHHTEEEESHHHHHHHHHTTTESEEEEETTSSSGGHHHHHHHHHH..HTTEEEEEESCHHHHHHHTTSSSECSEEEEEESTTTHHH CS
  Ribosomal_L7Ae   2 aieevlkkakkagklvlGlkevtkalergeaklvilAedvepeekkkllealck..ekevpyvkvkskkeLGelvgkkrpvsalaikdegdskdl 94 
                     +i++ l +++k+gk++lG+k ++k+l++g+aklvi+A +++p +k++ le++++  +++v+++ +++  eLG+++gk  ++s++a+ d+gds++l
      KKY24349.1  12 SINSRLALVMKSGKVTLGYKSTLKTLRSGKAKLVIIAGNTPPLRKSE-LEYYSMlaKTNVHHFAGNN-IELGTACGKLYRCSTMAVLDAGDSDIL 104
                     68999******************************************.*******************.************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.48
# Mc/sec: 672.99
//
Query:       KKY24350.1  [L=576]
Description: putative m serotype precursor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.87    9.5   3.5       0.41   10.6   0.2    2.1  3  Surfac_D-trimer  Lung surfactant protein D coiled-coil trimer
        8.9    6.4  35.5        0.8    9.8  19.7    3.3  3  TPR_MLP1_2       TPR/MLP1/MLP2-like protein


Domain annotation for each model (and alignments):
>> Surfac_D-trimer  Lung surfactant protein D coiled-coil trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   4.5e-05      0.41       6      27 ..      14      35 ..      10      38 .. 0.93
   2 ?   -3.7   0.1       1.3   1.2e+04      10      20 ..     106     116 ..     105     120 .. 0.71
   3 ?   -3.0   0.0      0.79   7.1e+03      12      22 ..     195     205 ..     193     209 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.5e-05
                     HHHHHHHHHHHHHHHHHHHHHH CS
  Surfac_D-trimer  6 QrveaLeGklqrLqnafsqYkK 27
                     Q ve L+ +lqr ++a  qY+K
       KKY24350.1 14 QLVEDLKAQLQRAEAASDQYRK 35
                     889******************9 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.3
                      HHHHHHHHHHH CS
  Surfac_D-trimer  10 aLeGklqrLqn 20 
                      aL+  +qrL+ 
       KKY24350.1 106 ALQAIIQRLNE 116
                      78888888875 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.79
                      HHHHHHHHHHH CS
  Surfac_D-trimer  12 eGklqrLqnaf 22 
                      +G+lq L+ a+
       KKY24350.1 195 DGRLQDLEKAL 205
                      7999*999885 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  19.7   8.9e-05       0.8      16     116 ..       4     108 ..       1     118 [. 0.89
   2 ?    1.9   0.9     0.023   2.1e+02      79     124 ..     172     217 ..     160     222 .. 0.85
   3 ?    1.5   5.1     0.033   2.9e+02      41     127 ..     231     315 ..     198     316 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 8.9e-05
  TPR_MLP1_2  16 ekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelq....alreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselek 110
                 ++++++a+ ++l edl++q ++a++a ++Y ++l +  + ++e +    al e+l+e   +i++lk e+++  +e    e+s+e ++ ++ k++++ ++
  KKY24350.1   4 SEDDLRAETAQLVEDLKAQLQRAEAASDQYRKQLDLLQSRLDETThehlALEEKLHEQDGKIESLKLEVKAHIKEKRDIEQSIEAERAMMAKDKEQHNA 102
                 57899*****************************88765555444222289*********************************************999 PP

  TPR_MLP1_2 111 riedln 116
                 + e l+
  KKY24350.1 103 KEEALQ 108
                 998887 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.023
  TPR_MLP1_2  79 eaesakaeleeseesweeqkeelekelselekriedlneqNklLhd 124
                   es++ el+es+ +++e + + + +l++lek + +    N+ L++
  KKY24350.1 172 MIESLRLELAESQIKLAEIEHMGDGRLQDLEKALLETRMANARLME 217
                 5688999999999999999999999999999999999999988765 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.033
  TPR_MLP1_2  41 aqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlneqNklLhdQlE 127
                  + ++ +e   hae+++ l +l +el+++ ++ ++  +  ++   +le++ ++   + ++l   ++ +  r+   +    + hdQ+E
  KKY24350.1 231 LKGDFMHESHAHAETSTGLGSLADELESVDETSEKHPETEDTK--KLEAQVKAARDENKALTLYIDRIIGRLLQHDGFEHIIHDQME 315
                 4567899999******************999999998887765..466666666666667776666666666666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1734  (0.0967148); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.50
# Mc/sec: 3453.64
//
Query:       KKY24351.1  [L=306]
Description: hypothetical protein UCRPC4_g02461 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 1889.21
//
Query:       KKY24352.1  [L=449]
Description: putative phosphoserine aminotransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-29  102.0   0.0    1.7e-16   60.1   0.0    2.1  2  Aminotran_5  Aminotransferase class-V
     0.0043   17.0   0.1     0.0061   16.5   0.1    1.2  1  DUF5569      Family of unknown function (DUF5569)


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   2.7e-14   2.4e-10       3     102 ..       9     112 ..       7     127 .. 0.89
   2 !   60.1   0.0   1.9e-20   1.7e-16      90     371 .]     155     437 ..     137     437 .. 0.79

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 2.7e-14
                  EBTTTS----HHHHHHHHHHHHCTC..CSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHH.HHHHHHHHCCCC.-TTTSEEEEETT CS
  Aminotran_5   3 ldsaAttqkpqeVldalqeyytdyn..anvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtte.ainlvalslars.lkpgdeivvtea 96 
                   + a+++++p +V++a  + + +++  + +  +++h++  a++++ e++e +a+l+ +++++ei+f++ +++  +++v+++l    ++++++  ++e+
   KKY24352.1   9 YFGAGPAPLPTSVIEAGGQAFVNFKdtGLGLAEISHRSPTANAILAETKEALAKLYDIPDNYEILFMQAGGTgEFSAVVHNLVGVwIERRRQKAIKEL 106
                  689*****************999872255566***********************************987777*********9999************ PP

                  SHGGGT CS
  Aminotran_5  97 ehhanl 102
                  e  an 
   KKY24352.1 107 EAAANS 112
                  ***997 PP

  == domain 2  score: 60.1 bits;  conditional E-value: 1.9e-20
                  EEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--.H.HHHHHH.HHH.TT-EEEEE-TTTTTTS CS
  Aminotran_5  90 eivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqp.v.eeigkl.akk.kgalvlvDaaqavghi 183
                  e+   + ++h n+  + +++k+ g k   ip ++e++l++ + e       + v+++ +++v G+ +p + +++  + + +  + +v++D++++++++
   KKY24352.1 155 EASRLVGDKHVNV--AINAKKANGGKFGSIPPESEWSLTPTKKEG--GTGSAFVYYCDNETVDGVEFPsFpKSLEPQgVDEeDERIVVADMSSNFLSR 248
                  5555555667777..888999999999999999999999776655..568899************66524234443315553599************* PP

                  ---HHHHTESEEEEETTTTTSSTT-EEEEEEHHHHHTS.....S....S.STTSEEEEET.TEEEEHCTTGGGS.SS--HHH.HHHHHHHHHHHHCHH CS
  Aminotran_5 184 pidvkklgvDflafsghKllgPtGiGvlyvrkellekl...epl....llggemveevsl.eettfaeapskfeaGTpnvag.iiglgaaleyleeig 272
                  + dvkk+gv  ++ +++K++g tGi+++++rk+ll      +p+    +lg + v  + + +  t+a++ s ++  T ++++ +i+ +  +++++  g
   KKY24352.1 249 KTDVKKYGV--IFGGAQKNVGVTGITIVIIRKDLLPPHtqtPPAsllhKLGLSAVPGPIMlDWPTIASSNSLYN--TLPIFNlWIAGQVMIRLVNTYG 342
                  *********..***********************97663325542222445555555556577779********..9999872566666788888776 PP

                  ...HHHHHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHT.TEEEEE..E-TTTHHHHHHTT.S-EEEEE--TTS- CS
  Aminotran_5 273 ...leaiekhekelaeyllerlkslpgvrlygpdkaerrasivsfnfkgvhaedvatlLdee.gIavrs..GhhcaqplmkrlalegtvRaSlyiynt 364
                     l+  e+ ++++++ ++++l++ p+v+ ++pd   r++  ++f +kg +a+  + +L+ + +  +++  Gh+++          g++RaS y++  
   KKY24352.1 343 tkgLSGQEEIADTKSKLIYNALDAHPDVYQVVPDLSVRSRMNICFRVKGGNADAEKAFLAGAeKRNLTGlkGHRSV----------GGIRASNYNAVP 430
                  111556677788999***************9****************************987677777777*****..........99****999999 PP

                  HHHHHHH CS
  Aminotran_5 365 eeevdrl 371
                   e+ d+l
   KKY24352.1 431 LENADKL 437
                  9988876 PP

>> DUF5569  Family of unknown function (DUF5569)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   6.8e-07    0.0061       2      67 ..      93     159 ..      92     200 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.8e-07
     DUF5569   2 lWiqrkrrkaalesaedkdkspe.shkaknesWikshfsrlseeklatdstasasssstapqpesgs 67 
                 +Wi r+r+ka +e   +++   e + +a+ e+W+   + r  ee l+ d   + s s +a+q  s+ 
  KKY24352.1  93 VWIERRRQKAIKELEAAANSGAEpADQAQMEEWLVPRLKREIEEELKLDYIVTGSWSLKASQEASRL 159
                 6***********988776665552779**********************998888888888877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2979.71
//
Query:       KKY24353.1  [L=712]
Description: putative homoaconitase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.4e-112  375.8   1.9   2.9e-111  372.7   1.9    2.0  1  Aconitase    Aconitase family (aconitate hydratase)
      6e-26   91.3   0.0    1.4e-25   90.1   0.0    1.6  1  Aconitase_C  Aconitase C-terminal domain
  ------ inclusion threshold ------
      0.085   11.9   0.3       0.14   11.2   0.3    1.3  1  MCM          MCM P-loop domain


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  372.7   1.9  4.8e-115  2.9e-111      22     461 .]       1     412 [.       1     412 [. 0.91

  Alignments for each domain:
  == domain 1  score: 372.7 bits;  conditional E-value: 4.8e-115
   Aconitase  22 llqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsvgaeealeknledefernkeryefLksaakafgirvvppgqGIvHqvnlEyglal 120
                 +++d +++ al+ ++  +++++++++ ++t+dh+v+++                    +e+n ++y++++++ak++g++++p+g+GI Hq+++E+g+a+
  KKY24353.1   1 MTHDNSWPVALKFMSIGASKLKDPKQIIMTLDHDVQNK--------------------TEKNLTKYRQIEEFAKKHGVDFYPAGRGIGHQIMVEEGYAW 79 
                 579*******************************9999....................3344466********************************** PP

   Aconitase 121 pgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlvlavigklrkkgvvgkvvEffG..egvesLsledr 217
                 pg++vv++DSHT+m+gg+G+l+++v +++a++++++  ++++ip v +++ltG l++gvt kD+++a++g +++++v ++++Ef+G  e+++s++++dr
  KKY24353.1  80 PGTLVVASDSHTNMYGGIGCLGTPVVRTDAASIWATGRTWWQIPPVAKITLTGILPKGVTGKDVIVALCGLFGQDDVLNHALEFTGseETMKSIPVDDR 178
                 **************************************************************************************8889********* PP

   Aconitase 218 aTiaNMaaEvGAttglfpvdektleYLkatgreeaa.....v.lvea..ydkaqalf..elaadedaeydkvleldlstlepsvagpkrPqdavplsel 306
                 +TiaNM++E+GA tglfp+d+ + ++L+++  ++a      + ++e+  +++ + lf  +l ad++a+y+k l ldlstl+p+v+gp++++ a+pl+el
  KKY24353.1 179 LTIANMTTEWGALTGLFPIDSVLKAWLRMKATTAAMykspeTtTHERftHEALDTLFeeQLVADKGAKYAKQLFLDLSTLSPYVSGPNSVKVATPLNEL 277
                 ****************************9888555522222113333212224456665699**********************************443 PP

   Aconitase 307 vkkefkeelekeaaekaleyklkegtklkdgkvdiaaigSCTNssnedvraaaglla.kavekg...lkvkpgvktsvaPGSevvkayleaeGlleiLe 401
                                             + +k+++a+++SCTNs+ +d+ aaa++++ +a+++g    k+++gvk+++a++S   ++ +e++G ++ L 
  KKY24353.1 278 E--------------------------SQSIKINKAYLVSCTNSRASDIAAAAKVFKdAAEANGgkiPKIADGVKFYMAAASVPEQRIAEEAGDWQALV 350
                 3..........................23456*************************877777755448899*************************** PP

   Aconitase 402 kaGfevvgagCstCig.nsdrleegeaivsssNRNFegRqg.pntrayLaSPelvvaaAlaG 461
                 +aG+ev+ agC++Cig  ++ le+ge+++s+sNRNF+gR+g ++++ayL SPe+v+a+Al+G
  KKY24353.1 351 EAGAEVLPAGCGPCIGlSAGILEPGEVGISASNRNFKGRMGsTDAKAYLGSPEVVAASALSG 412
                 ****************************************8799999*************98 PP

>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.0   2.3e-29   1.4e-25      20     130 ..     491     607 ..     475     608 .. 0.93

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 2.3e-29
                  GGCCGHCCHHHCCCGGTTTCCCCTTTSBBSEEEETTTTEEE.......EHHHHHHHHHHTT--EEEE--SSBTBS---THHHHHHHHTTEEEEEES-B CS
  Aconitase_C  20 dtdlkipkqfegtianiglgnelveekrankttdlddgeke.......dvvdaaerykkegaklvviagknfGeGSSRehAAkalrllGikaviaeSF 110
                  ++  ++p  + g+i+ ++++n+++++++++k+t++d+++ e       +++d a+    ++ +++v++ +nfG+GSSRe+AA+al+++ i +v+a+SF
   KKY24353.1 491 EVYPGFPERVAGEIVFCDADNINTDGIYPGKYTYQDNVPVEkmaevcmENYDPAFSGIAKPGDILVSG-FNFGCGSSREQAATALLAKKIPLVVAGSF 587
                  455679999****************************99999999999********999*********.***************************** PP

                  -HHHHHHHHHTT-EEEEEST CS
  Aconitase_C 111 erIfennliknglLplefke 130
                  ++If++n+i+n+l+ le+++
   KKY24353.1 588 GNIFSRNSINNALMGLEVPK 607
                  ****************9875 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   2.4e-05      0.14     145     174 ..     277     306 ..     266     313 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.4e-05
                 HHHSEEEEESSSCEEEEE--EEEEEEE--S CS
         MCM 145 mEqqtisiaKaGivatLnartsvlaAanpk 174
                 +E+q+i+i+Ka +v + n+r+s +aAa  +
  KKY24353.1 277 LESQSIKINKAYLVSCTNSRASDIAAAAKV 306
                 8************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.49
# Mc/sec: 4402.45
//
Query:       KKY24354.1  [L=497]
Description: hypothetical protein UCRPC4_g02464 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 3010.26
//
Query:       KKY24355.1  [L=268]
Description: putative cyclin ccl1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-31  107.9   0.6    4.3e-28   97.7   0.1    2.3  2  Cyclin_C_2  Cyclin C-terminal domain
  ------ inclusion threshold ------
      0.047   13.4   0.3       0.31   10.8   0.0    2.2  2  Cyclin_N    Cyclin, N-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin_C_2  Cyclin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1   0.00028       2.5      47      66 ..       2      21 ..       1      50 [. 0.74
   2 !   97.7   0.1   4.8e-32   4.3e-28       1     104 []      60     179 ..      60     179 .. 0.95

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00028
  Cyclin_C_2 47 lytPsqIalaallladekla 66
                 y P qI++ al+la ++ +
  KKY24355.1  2 TYHPKQIMMCALFLATKTDH 21
                79************988655 PP

  == domain 2  score: 97.7 bits;  conditional E-value: 4.8e-32
  Cyclin_C_2   1 hPfRpLeGflldLkal....................gkslekriekaykrareilkssalltDayflytPsqIalaallladeklaerYleeklgkees 79 
                 hP ++LeG++++L+a+                    ++ l+kri++a+  ar++l+++a+ltDayflytPsqI+laal++ade+la+ +l+ k++    
  KKY24355.1  60 HPMKGLEGGFMELRAMaegsstgpdfvrlmqerptrESILRKRIDAAEYYARKTLHTAAQLTDAYFLYTPSQIWLAALMIADEPLATLFLDAKMKFV-G 157
                 9*********************************9999999****************************************************9775.4 PP

  Cyclin_C_2  80 seksaksellekllktiescrkllk 104
                  +    +++++k+l+t++sc++llk
  KKY24355.1 158 LP---LEAIRPKVLDTLQSCADLLK 179
                 44...7789**************96 PP

>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.4e-05      0.31      72     126 ..       4      56 ..       1      57 [. 0.84
   2 ?    0.5   0.1     0.054   4.8e+02      49      69 ..     111     131 ..      89     201 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.4e-05
                 CHHHHHHHHHHHHHHHHSSS---HHHHHHHTTTSS-HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N  72 klqlvgatcLllAaKveeisppkledlvyitdeafteeeilemErliLetLnfdl 126
                 + + +++ +L+lA+K+      +l+ ++       te++i+  E l+++ L f l
  KKY24355.1   4 HPKQIMMCALFLATKTDHY-HISLSRFISKLP-KTTEDDIKAPEFLLMQGLRFTL 56 
                 66789999********666.678888887765.788***************9987 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.054
                 TTHHHHHHHHHHHHHHHS--- CS
    Cyclin_N  49 petlflavnyldRflskksvp 69 
                 ++tl++a+++ d ++     +
  KKY24355.1 111 RKTLHTAAQLTDAYFLYTPSQ 131
                 567888888888777633322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.53
# Mc/sec: 1524.02
//
Query:       KKY24356.1  [L=305]
Description: putative amidohydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-32  111.8   0.6    6.5e-24   84.9   0.3    2.0  2  Amidohydro_1  Amidohydrolase family
    7.8e-07   28.9   0.8    1.8e-05   24.4   0.1    2.8  2  Amidohydro_3  Amidohydrolase family
  ------ inclusion threshold ------
       0.14   11.7   0.0         10    5.7   0.0    2.4  2  SRF-TF        SRF-type transcription factor (DNA-binding and 


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0     3e-11   1.8e-07       3      88 ..       1      81 [.       1      84 [. 0.90
   2 !   84.9   0.3   1.1e-27   6.5e-24     101     343 ..      62     285 ..      58     286 .. 0.89

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 3e-11
                  EE-EEEEEEECETTECSSS..GHHHHH.STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTHHHHHHHHHHHTSSSEEEEEEESSEGGS CS
  Amidohydro_1  3 lPGlIDaHvHleqsllrga..tledwl.vppetaaealesgiktalksGtttvadmgattstgiealleaaeelplglrilggkvsldr 88
                  +PGl D HvH++ s+++g+   ++ wl + p t+ + l++g+ +++++G t+v+d+      +   +++a+e++   + +l+++++++r
    KKY24356.1  1 MPGLWDCHVHFS-SASSGDgpGYLAWLqAHPATCGANLARGCWETIQAGYTSVRDVAG----YGCEIAKAVEDV---IKVLASGGIMSR 81
                  7**********6.6677778**************************************....999999999996...788888888874 PP

  == domain 2  score: 84.9 bits;  conditional E-value: 1.1e-27
                   HHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHCCEEEHCTCE CS
  Amidohydro_1 101 lkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafgetiehgthlevaeslglldeiklilahgvh 197
                   +++ ++++ik+ a+g++++  +++   +fs+eel+ +++ea++++  va+H+++ +g++ +a++a+ +t eh ++ +        +++kl+ ++ v+
    KKY24356.1  62 IAKAVEDVIKVLASGGIMSRDDDPNYAQFSPEELRVIVEEAERQGRIVAAHVHGKPGII-NAINAGCKTLEHVSYGDE-------EVVKLMKEKKVL 150
                   778899*****************************************************.9*****999999888888.......9*****999999 PP

                   EEHH..HHHHHHHHHHHHCEEHHHHHHHH....SEHHHHHHHHHHHHTSCEEEEEECTTSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHH CS
  Amidohydro_1 198 ltpt..eaellkerlkeagvahcpfsnsi....lrsgrealrkaldeGvkvglgtDgaasgnslnlleelrlalklqrgllyedeegglslkealrm 288
                     +t   + +l+++  ++     p s ++     + + ea + a+++G+ ++lgtDg    n +   +e+  a+           ++g++ ++alr+
    KKY24356.1 151 WIATraCIDYLIAN--SNEME--PESRRKvkalASAHKEAYELAIESGTDIALGTDGPPGVNFA---KEIEAAV-----------KCGMTNLQALRA 229
                   99775677777777..44444..33333355559999*******************88887777...99*****...........************ PP

                   HTHHHHHHT.T-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSEEEEEEEETTEE CS
  Amidohydro_1 289 aTingAkal.glddkvGsievGkdADlvvvdldilaafvglkkdgnvkkvivkGkl 343
                   aT  g +++ g+++k G ++vG+dAD  +++ +++ ++  l +  ++++v+++G+l
    KKY24356.1 230 ATAMGPRSIgGMAKKSGQLKVGYDADVLALERNPIQDVSVLQNWACITHVWKAGRL 285
                   ******99846*******************9999999999999999********87 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.028   1.7e+02      11      24 ..       1      14 [.       1      58 [. 0.72
   2 !   24.4   0.1     3e-09   1.8e-05     257     470 ..      87     284 ..      63     286 .. 0.63

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.028
  Amidohydro_3 11 lPGFvDsHtHlagg 24
                  +PG+ D H H  ++
    KKY24356.1  1 MPGLWDCHVHFSSA 14
                  8*********6554 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 3e-09
  Amidohydro_3 257 wpdfedealaelvaaadergldvaihaigdaavddvldafeaaaekngnqdrrrlehaegvtesqiervaalq..vaagvqpvfnf.....edelld 346
                   ++ f+ e+l+ +v++a  +g  va h++g   + ++++a  +           +leh +  +e+ ++ +++    ++a   ++        e+e   
    KKY24356.1  87 YAQFSPEELRVIVEEAERQGRIVAAHVHGKPGIINAINAGCK-----------TLEHVSYGDEEVVKLMKEKKvlWIATRACIDYLiansnEMEPES 172
                   668889999999999999999999999999999955555444...........44444444444444333322002222221111123322111112 PP

  Amidohydro_3 347 srlgperargs.tpvkellnagvkvalgsDapvgpfdpwprigaavmrktrrggevlrpdeelsleeala.lyTrgpAkalgledrkGtLevGadAD 441
                   +r  ++ a+++ ++  + ++ g  +alg+D p g ++ + +i+aav                ++  +al+ ++  gp  + g+ ++ G+L+vG+dAD
    KKY24356.1 173 RRKVKALASAHkEAYELAIESGTDIALGTDGPPG-VNFAKEIEAAVK---C----------GMTNLQALRaATAMGPRSIGGMAKKSGQLKVGYDAD 255
                   22224444444999999*************4444.466888999992...2..........23444555505555888888999999********** PP

  Amidohydro_3 442 lvvldadpldvdppelaear...vrltvvdGr 470
                   +  l+++p++   + l   +   + +++++Gr
    KKY24356.1 256 VLALERNPIQDV-SVLQ--NwacITHVWKAGR 284
                   *****9988733.3222..1335788888887 PP

>> SRF-TF  SRF-type transcription factor (DNA-binding and dimerisation domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0017        10      21      36 ..     184     199 ..     177     199 .. 0.93
   2 ?    3.3   0.0    0.0099        59      18      36 ..     240     258 ..     238     266 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0017
      SRF-TF  21 KKAsELsvLcgvevav 36 
                 K A+EL++  g+++a+
  KKY24356.1 184 KEAYELAIESGTDIAL 199
                 99************96 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.0099
      SRF-TF  18 GLfKKAsELsvLcgvevav 36 
                 G+ KK  +L+v ++++v  
  KKY24356.1 240 GMAKKSGQLKVGYDADVLA 258
                 899**************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2109.32
//
Query:       KKY24357.1  [L=238]
Description: putative ubiquitin conjugating enzyme [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-41  139.0   0.0      1e-40  138.6   0.0    1.1  1  UQ_con     Ubiquitin-conjugating enzyme
    4.6e-07   29.6   0.0      8e-07   28.8   0.0    1.3  1  UBA_3      Fungal ubiquitin-associated domain
     0.0005   19.8   0.0     0.0008   19.1   0.0    1.3  1  Prok-E2_B  Prokaryotic E2 family B
  ------ inclusion threshold ------
      0.039   14.2   0.0      0.064   13.5   0.0    1.5  1  RWD        RWD domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.0   2.2e-44     1e-40       1     139 [.       8     145 ..       8     146 .. 0.97

  Alignments for each domain:
  == domain 1  score: 138.6 bits;  conditional E-value: 2.2e-44
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBE.TTSBB-CGGGSTTT--TTSHHH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvd.ksGevcldiLkeekWspaltle 98 
                 r++kel+e++k+ +s ++a+++   +l+++++ + gp++tpYegg++ +++e+p++YP++pP +kf tk++HPn++ ++G++cld L +  Wsp+lt++
  KKY24357.1   8 RVTKELAEIQKDVQSHVKAEVTGG-DLTKLRGSFDGPPGTPYEGGTYVVNIEIPNEYPFRPPIMKFATKVWHPNISsQTGAICLDTLGTA-WSPVLTIK 104
                 789********************7.***************************************************************66.******** PP

                 HHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
      UQ_con  99 svllsiqsLlaepnpesplnkeaakllkkdreeykkkvkey 139
                 s+lls+qsLl++p+p++p ++e+a++l k ++++ + +ke+
  KKY24357.1 105 SALLSLQSLLSTPEPKDPQDAEVATMLLKFPAQFTRVAKEW 145
                 **********************************9999876 PP

>> UBA_3  Fungal ubiquitin-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   1.8e-10     8e-07       7      41 ..     184     218 ..     180     224 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.8e-10
                 --SHHHHHHHHHHT--HHHHHHHHHHS--SS--SS CS
       UBA_3   7 GidrdlVdefvsqGFekdkvievLkrLgiksldpe 41 
                 G ++++Vd+f+s+GF+ + v+ ++++Lg+  ++ e
  KKY24357.1 184 GYNKNMVDQFASMGFDIQDVVSAFQQLGLPRMNGE 218
                 77899************************999944 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.8e-07    0.0008      33     118 ..      29     128 ..       3     134 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.8e-07
   Prok-E2_B  33 t...................sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLClleeeldldewdpngsvadvleqlqqvLn.egisg 111
                 t                   +ggt+ +++ +p+++p+ pp++  +      + p i++++ga+Cl    +   +w p  +++ +l +lq +L    +++
  KKY24357.1  29 TggdltklrgsfdgppgtpyEGGTYVVNIEIPNEYPFRPPIMKFATKV---WHPNISSQTGAICL---DTLGTAWSPVLTIKSALLSLQSLLStPEPKD 121
                 155555555556666666669********************9999888...**************...7777889999999999999999999788888 PP

   Prok-E2_B 112 dedaefa 118
                  +dae+a
  KKY24357.1 122 PQDAEVA 128
                 8888875 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.4e-05     0.064      54      80 ..      52      81 ..      12     116 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.4e-05
                EEEEEEEE-SSTTSS--EEEEEECC...SS CS
                xxxxxxxxxxxxxxxxxxxxxxxxx...xx RF
         RWD 54 slkleiklpeeYPeeaPiislsste...nl 80
                +++++i+ p+eYP ++Pi+++ ++    n+
  KKY24357.1 52 TYVVNIEIPNEYPFRPPIMKFATKVwhpNI 81
                57899***************9988744544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 1540.10
//
Query:       KKY24358.1  [L=462]
Description: putative 26s protease regulatory subunit 4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-41  141.2   0.0    4.5e-41  140.4   0.0    1.4  1  AAA             ATPase family associated with various cellula
    3.4e-11   42.8   0.2    7.4e-11   41.7   0.2    1.6  1  AAA_lid_3       AAA+ lid domain
    5.1e-10   39.2   0.1    9.9e-10   38.2   0.1    1.5  1  Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
    1.2e-06   28.8   0.3      0.033   14.5   0.1    2.6  2  AAA_22          AAA domain
    4.8e-06   26.8   0.0      9e-06   25.9   0.0    1.5  1  AAA_2           AAA domain (Cdc48 subfamily)
    2.3e-05   23.7   0.0    3.9e-05   23.0   0.0    1.3  1  DUF815          Protein of unknown function (DUF815)
    6.2e-05   23.0   0.0    0.00019   21.5   0.0    1.9  1  AAA_5           AAA domain (dynein-related subfamily)
    0.00038   20.9   0.3      0.011   16.1   0.1    2.4  2  AAA_16          AAA ATPase domain
    0.00044   20.0   0.0    0.00088   19.1   0.0    1.4  1  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
  ------ inclusion threshold ------
      0.015   15.5   0.0      0.035   14.3   0.0    1.6  1  AAA_33          AAA domain
      0.016   15.0   0.0      0.037   13.8   0.0    1.5  1  IstB_IS21       IstB-like ATP binding protein
      0.021   14.2   0.2       0.41   10.0   0.1    2.2  2  ATPase          KaiC
      0.022   15.0   0.0      0.022   15.0   0.0    2.1  1  AAA_28          AAA domain
      0.022   14.6   0.0      0.044   13.7   0.0    1.6  1  AAA_3           ATPase family associated with various cellula
      0.022   14.0   1.7      0.033   13.4   0.1    2.0  3  TIP49           TIP49 P-loop domain
      0.038   13.3   0.0      0.092   12.0   0.0    1.6  1  Zeta_toxin      Zeta toxin
      0.039   13.4   0.7       0.29   10.5   0.1    2.1  2  PhoH            PhoH-like protein
      0.041   13.8   0.1        0.7    9.8   0.1    2.4  1  NACHT           NACHT domain
      0.045   14.1   0.0      0.088   13.2   0.0    1.5  1  RNA_helicase    RNA helicase
      0.046   13.1   0.0      0.094   12.1   0.0    1.4  1  Mg_chelatase    Magnesium chelatase, subunit ChlI
      0.065   13.3   0.0       0.14   12.2   0.0    1.5  1  AAA_14          AAA domain
      0.089   13.3   0.0       0.18   12.4   0.0    1.6  1  AAA_18          AAA domain
       0.16   11.5   0.1       0.39   10.2   0.1    1.7  1  AAA_7           P-loop containing dynein motor region
       0.21   12.1   0.5       0.79   10.2   0.5    2.2  1  ABC_tran        ABC transporter
       0.21   11.2   0.7       0.95    9.2   0.0    2.3  2  Prot_ATP_OB_N   Proteasomal ATPase OB N-terminal domain
       0.31   10.7   2.2       0.24   11.1   0.3    1.9  2  AAA_24          AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.4   0.0   6.5e-44   4.5e-41       1     131 [.     244     376 ..     244     377 .. 0.94

  Alignments for each domain:
  == domain 1  score: 140.4 bits;  conditional E-value: 6.5e-44
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 v+lyG pGtGKTllakava++++++fl+i gsel++ky+g++++ +r++f+ a e+a psi+fiDEida++++r   +++ ++e +r++ +Ll++ldg+
  KKY24358.1 244 VILYGSPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLVRQMFQVAAEHA-PSIIFIDEIDAIGTKRyesTSGGEREIQRTMLELLNQLDGF 341
                 79******************************************************9.****************886556777888999999******* PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 +++ +++ vi+atn++d+ldpal+r gR+drki +e
  KKY24358.1 342 DDR-GDIKVIMATNKIDTLDPALIRpGRIDRKILFE 376
                 **7.66***************************987 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.2   1.1e-13   7.4e-11       1      44 [.     399     442 ..     399     443 .. 0.98

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 1.1e-13
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedfe 44 
                 dvdl+e   + +  SGAD++a+c eA+l+Alr+ +  + m+df+
  KKY24358.1 399 DVDLDEFINQKDDLSGADIKAICSEAGLMALRERRMRVQMQDFR 442
                 9******************************************7 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.1   1.4e-12   9.9e-10       1      56 [.     131     185 ..     131     186 .. 0.95

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 1.4e-12
                     EEEEEEE-TTSSEEEEE-TTS-EEEEEE-GGGSSST--TTEEEEEETTTTEEEEEE CS
  Prot_ATP_ID_OB   1 VatVsEvlddteraiVktssdeevvvslagavpremLrpgDlVavdkdtgfifEkL 56 
                     V+++ E++dd ++aiV + ++ e++vs+ + v+++ L pg++++++ ++  ++ +L
      KKY24358.1 131 VGNLEEIIDD-DHAIVSSATGPEYYVSIMSFVDKDLLEPGASILLHHKSVSVVGVL 185
                     99********.*************************************98877665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   4.8e-05     0.033       8      29 ..     244     265 ..     239     272 .. 0.87
   2 !   12.2   0.0   0.00024      0.17      61     128 ..     270     352 ..     264     357 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.8e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleql 29 
                 ++++G +GtGKT+l++ +++q 
  KKY24358.1 244 VILYGSPGTGKTLLAKAVANQT 265
                 689****************997 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00024
      AAA_22  61 lralglelka.erlsseellealeqalraravielliiDEaqhlr.....s.........eealeeLrsllnl.srkgvqliLv 128
                 lr++g+el   + ++  +l++++ q + ++a  +++ iDE++ +      s          ++le L +l  + +r ++++i++
  KKY24358.1 270 LRIVGSELIQkYLGDGPRLVRQMFQVAAEHAP-SIIFIDEIDAIGtkryeStsggereiqRTMLELLNQLDGFdDRGDIKVIMA 352
                 55555555555566778888777777777777.8**********8876651667888888777777777666667999999875 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.3e-08     9e-06       7     105 ..     245     337 ..     240     392 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.3e-08
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG-------------HHHHHHHHHHH CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqil 103
                 +l g+ g+Gkt+laka+a+  ++    ++ r+  sel++    + l +     +++ + a+e+   i+++DEid i  k+ ++    + ++qr +L +l
  KKY24358.1 245 ILYGSPGTGKTLLAKAVANQTSA----TFLRIVGSELIQ----KYLGDGPRLVRQMFQVAAEHApsIIFIDEIDAIGTKRYESTSGGEREIQRTMLELL 335
                 5679999*************996....************....99888887777777777777779************988888888899********9 PP

                 H- CS
       AAA_2 104 eg 105
                  +
  KKY24358.1 336 NQ 337
                 76 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   5.6e-08   3.9e-05      52     116 ..     240     309 ..     196     316 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 5.6e-08
      DUF815  52 pannvLLwGarGtGKSslvkallneyaeegLrli..evekedlkelpklvellr...erperfilfvDDL 116
                 p + v+L+G+ GtGK  l ka+ n+++++ Lr++  e+ ++ l + p+lv+++    +++   i+f+D +
  KKY24358.1 240 PPKGVILYGSPGTGKTLLAKAVANQTSATFLRIVgsELIQKYLGDGPRLVRQMFqvaAEHAPSIIFIDEI 309
                 66789*****************************8889999********997651115667789999975 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.7e-07   0.00019       1     134 [.     243     363 ..     243     365 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.7e-07
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..- CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.egeilvlDEveraesevlnsLlslleerrlllee 98 
                 +v+L G pGtgK+ la+ +a  + ++++ + +++      l++++   +++ +lv + +  aa+  ++i+++DE++ + ++  +s      e ++ + e
  KKY24358.1 243 GVILYGSPGTGKTLLAKAVANQTSATFLRIVGSE------LIQKYL--GDGPRLVRQMFQVAAEhAPSIIFIDEIDAIGTKRYESTSGGEREIQRTMLE 333
                 59**************************999986......999999..6777888888888888789*********99887777765544443333333 PP

                 SSSEEE---........-EEEEEESS--.-TT-TTHHH CS
       AAA_5  99 ggelvkaknddller..frviatanpldrslnelspal 134
                 + ++ +     +  r  + vi+++n+ d     l+pal
  KKY24358.1 334 LLNQLDG----FDDRgdIKVIMATNKID----TLDPAL 363
                 3222222....22233477777777777....666666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.6e-05     0.011      24      51 ..     241     268 ..     211     283 .. 0.76
   2 ?    2.4   0.0      0.27   1.8e+02     121     147 ..     287     312 ..     274     341 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.6e-05
      AAA_16  24 pelvllsGesGvGKsslvrellralekd 51 
                 p  v+l+G +G+GK+ l+++++++ +++
  KKY24358.1 241 PKGVILYGSPGTGKTLLAKAVANQTSAT 268
                 489******************9866554 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.27
      AAA_16 121 ellkrllallsrderplvlvlDdlqwa 147
                 +l++++++ +++ + p ++++D+++ +
  KKY24358.1 287 RLVRQMFQVAAE-HAPSIIFIDEIDAI 312
                 677888888888.778********954 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.3e-06   0.00088      35      96 ..     243     312 ..     235     320 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.3e-06
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvk.lkitsgPvleka.gd...laalltnleek...dvlfideihrl 96 
                  v+lyG+PG Gkt lak +a++  ++ l+i  +  ++k  gd   l+  + ++ ++    ++fidei  +
  KKY24358.1 243 GVILYGSPGTGKTLLAKAVANQTSATfLRIVGSELIQKYlGDgprLVRQMFQVAAEhapSIIFIDEIDAI 312
                 599******************99887257777778887535623344444444332222799***99876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   5.1e-05     0.035       2      29 ..     244     271 ..     244     308 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.1e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklgavlls 29 
                 v+l G pG+GK+ la+ +++++ a++l+
  KKY24358.1 244 VILYGSPGTGKTLLAKAVANQTSATFLR 271
                 7899***************999955443 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.4e-05     0.037      46      71 ..     240     265 ..     227     276 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.4e-05
   IstB_IS21  46 kkenivllGpsGvGKshlaialgvea 71 
                   ++++l G +G+GK+ la a++ ++
  KKY24358.1 240 PPKGVILYGSPGTGKTLLAKAVANQT 265
                 56789****************99886 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00059      0.41      14      38 ..     236     260 ..     209     269 .. 0.85
   2 ?    1.9   0.0      0.18   1.2e+02     105     154 ..     286     338 ..     270     340 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00059
      ATPase  14 gGipegrvvlitGepGtGKtifalq 38 
                  Gi   + v ++G+pGtGKt++a+ 
  KKY24358.1 236 MGIKPPKGVILYGSPGTGKTLLAKA 260
                 5788888899************975 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.18
      ATPase 105 eelieelaeaikeikakrvviDsitgl...ayeekeavaReilrqlvrvlkkl 154
                   l++++ ++ +e   + + iD i+++    ye+++   Rei r++++ l++l
  KKY24358.1 286 PRLVRQMFQVAAEHAPSIIFIDEIDAIgtkRYESTSGGEREIQRTMLELLNQL 338
                 67888999999999999999999999864346666677888888888888775 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   3.2e-05     0.022       2      41 ..     244     288 ..     243     328 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.2e-05
      AAA_28   2 ivitGgestGKTtlleaLaar....gypvv.pEaareileeklak 41 
                 +++ G ++tGKT l++a a++      ++v  E   ++l ++ + 
  KKY24358.1 244 VILYGSPGTGKTLLAKAVANQtsatFLRIVgSELIQKYLGDGPRL 288
                 789****************77554456666677777777666554 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.4e-05     0.044       2      30 ..     244     272 ..     243     314 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.4e-05
       AAA_3   2 vllegvPGlaktllvkalakaldlefkri 30 
                 v+l g PG++ktll+ka+a++ +++f ri
  KKY24358.1 244 VILYGSPGTGKTLLAKAVANQTSATFLRI 272
                 7899***********************99 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   4.7e-05     0.033      51      90 ..     242     279 ..     199     295 .. 0.85
   2 ?   -2.4   0.0         3     2e+03     273     288 ..     295     310 ..     286     313 .. 0.83
   3 ?   -2.2   0.1       2.6   1.8e+03     137     199 ..     379     441 ..     369     453 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.7e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevys 90 
                 ++v+l G +gtGkt la a++++ +    f  ++gse+ +
  KKY24358.1 242 KGVILYGSPGTGKTLLAKAVANQTS--ATFLRIVGSELIQ 279
                 89*******************9977..78*******9865 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3
                 XXXXXXXXXXXXXXXX CS
       TIP49 273 gkaeivpGvlfiDevh 288
                   ae  p ++fiDe+ 
  KKY24358.1 295 VAAEHAPSIIFIDEID 310
                 578999********86 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.6
                 .TTS--EEEEEE-SS-EEEEEE-HHHHHHH.HHHT--TT-EEEEETTT--EE.E-SSS-SS---- CS
       TIP49 137 ekkikevkitlktakeekklklgskiaeel.lkekvkegDviviekesGkvk.klGrsearakef 199
                 ++++k+ + tl+t+k++   +++    e + +k+ ++  D+  i +e+G +  +  r + ++++f
  KKY24358.1 379 DQNTKKKIFTLHTSKMSLAEDVDLD--EFInQKDDLSGADIKAICSEAGLMAlRERRMRVQMQDF 441
                 5677888889999999866555533..22215677888888888888886642344444455555 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00013     0.092      15      49 ..     240     272 ..     233     281 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
  Zeta_toxin  15 rPklillgGqpGAGKselaellkdelerqgnvvrl 49 
                  Pk ++l G+pG GK+ la+++++++     ++r+
  KKY24358.1 240 PPKGVILYGSPGTGKTLLAKAVANQT--SATFLRI 272
                 6999******************9997..5666665 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00042      0.29      22      42 ..     244     264 ..     234     273 .. 0.84
   2 ?    0.8   0.1       0.4   2.7e+02      76     135 ..     327     386 ..     305     411 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00042
                 EEEE--TTSSTTHHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalave 42 
                 v+  G+ GtGKt+la a+a +
  KKY24358.1 244 VILYGSPGTGKTLLAKAVANQ 264
                 7899***********999865 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.4
                 --TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHH CS
        PhoH  76 vdpylrplydaLkdllgaekvekllekgkievaplaymRGrTlndafvilDEAQnttkeq 135
                 ++  +  l ++L+ + ++  ++ ++ ++ki +++ a +R   +++++++    Qnt+k+ 
  KKY24358.1 327 IQRTMLELLNQLDGFDDRGDIKVIMATNKIDTLDPALIRPGRIDRKILFENPDQNTKKKI 386
                 566677788888888899999******************888999999988889988765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1     0.001       0.7       3      23 ..     244     264 ..     242     339 .. 0.96

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.001
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 vil G +G GKT L++ +a +
  KKY24358.1 244 VILYGSPGTGKTLLAKAVANQ 264
                 89**************99875 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   0.00013     0.088       1      26 [.     244     269 ..     244     320 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00013
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl 26 
                   ++lyG++g+GK++lak +a++ + ++
    KKY24358.1 244 VILYGSPGTGKTLLAKAVANQTSATF 269
                   689**************777766554 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00014     0.094      25      43 ..     244     262 ..     238     269 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   ++l+G+pG+GKt+lak+++
    KKY24358.1 244 VILYGSPGTGKTLLAKAVA 262
                   79*************9975 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0    0.0002      0.14       5      76 ..     244     312 ..     241     353 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0002
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76 
                 +++ G   +GKT l+k ++++       +l i   +  +k l d  +l + +++ + e+  +++f+DEi  +
  KKY24358.1 244 VILYGSPGTGKTLLAKAVANQTS---ATFLRIVGSELIQKYLGDGPRLVRQMFQVAAEHAPSIIFIDEIDAI 312
                 7999999***********98877...677777666655554444334555555544445889*******987 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00026      0.18       1      25 [.     244     289 ..     244     390 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00026
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf....................g 25 
                 ++l G pG+GKt lak++++ + +                     +
  KKY24358.1 244 VILYGSPGTGKTLLAKAVANQTsATflrivgseliqkylgdgprlV 289
                 79****************9986332666665444444444444444 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00056      0.39      32      58 ..     240     266 ..     232     321 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00056
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkld 58 
                   k v+l+G+ GtGKt+++k + ++ +
  KKY24358.1 240 PPKGVILYGSPGTGKTLLAKAVANQTS 266
                 56789***************9998877 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.5    0.0011      0.79       6      38 ..     236     268 ..     234     443 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0011
                 EEEETTSEEEEEESTTSSHHHHHHHHTTSS--S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   6 lklkegekvaivGenGaGKStLlkllagllkpt 38 
                 + +k+ + v + G+ G+GK+ L+k++a++++ t
  KKY24358.1 236 MGIKPPKGVILYGSPGTGKTLLAKAVANQTSAT 268
                 5678888999*****************998876 PP

>> Prot_ATP_OB_N  Proteasomal ATPase OB N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0014      0.95      11      56 ..     140     186 ..     130     190 .. 0.76
   2 ?   -1.4   0.4       2.8   1.9e+03      21      28 ..     431     438 ..     428     439 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0014
  Prot_ATP_OB_N  11 qdgtadVlvggrrmrVavsPlvdaeeLrpGqeVlLnEalv.vVealg 56 
                    +d+ +  +  g ++ V++   vd + L+pG+ +lL  ++v vV++l+
     KKY24358.1 140 DDHAIVSSATGPEYYVSIMSFVDKDLLEPGASILLHHKSVsVVGVLT 186
                    444444467899***********************876644888776 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.8
  Prot_ATP_OB_N  21 grrmrVav 28 
                     rrmrV++
     KKY24358.1 431 ERRMRVQM 438
                    7*****86 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   0.00035      0.24       5      22 ..     244     261 ..     241     352 .. 0.87
   2 ?   -3.0   0.1         7   4.9e+03     145     186 ..     402     452 ..     380     454 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00035
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +++yG++g+GKT lak  
  KKY24358.1 244 VILYGSPGTGKTLLAKAV 261
                 789************987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7
      AAA_24 145 ytrlepklgkktanelkeevDlvlranlkred.........kvgervlkts 186
                  + ++ + ++ +++ +k ++ + + + l++              ervlkt+
  KKY24358.1 402 LDEFINQKDDLSGADIKAICSEAGLMALRERRmrvqmqdfrTARERVLKTK 452
                 456666666666777777777777777654446666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 3087.93
//
Query:       KKY24359.1  [L=493]
Description: putative proteasome regulatory particle subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-55  187.6   0.3    2.8e-55  186.7   0.3    1.5  1  RPN7      26S proteasome subunit RPN7
      2e-14   53.9   0.0    3.8e-14   53.1   0.0    1.5  1  PCI       PCI domain


Domain annotation for each model (and alignments):
>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.7   0.3   3.1e-59   2.8e-55       1     174 []     101     274 ..     101     274 .. 0.99

  Alignments for each domain:
  == domain 1  score: 186.7 bits;  conditional E-value: 3.1e-59
                 -HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCCC--SHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
        RPN7   1 DekwveelrkknekeleeLdaelkdakenlgkeeirrakldlaehYlkigdleeAlkaysrireyctslkhkidmllnlirvaiffndwdlvskyleka 99 
                 De+++e+l+ +nekele++++e ++a+en g++ei+ a  ++ae+++++gd+++A++ y++++e +  l++kid++l++irv++ff+d   v+  +e+a
  KKY24359.1 101 DESLYEKLKTENEKELEAIQKEETEAEENAGETEIQHARGKRAEFWARAGDKDKAIASYEAVFERTGVLGAKIDLVLAMIRVGLFFGDRVYVKGQIERA 199
                 899************************************************************************************************ PP

                 HCSSS---.HHHHHHHHHHHHHHHHHTT-HHHHHHHHCTS-GGGT.TTT--HHHHHHHHHHHHHHH--HHHHHHH CS
        RPN7 100 kellekggdwerknrlkvyeGlallairkfkeAaellldilstftskellsyedlavyavlcalatldRkdLkak 174
                   l+e+ggdw+r+nrlk+y+Gl+ll+ir ++ Aa llld+lstfts+el+sy+ l+vy+vl++ +tl+R+d+k+k
  KKY24359.1 200 DMLVESGGDWDRRNRLKAYKGLHLLTIRSYNLAAPLLLDSLSTFTSYELCSYSSLVVYSVLAGTLTLKRTDFKSK 274
                 ************************************************************************986 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   4.2e-18   3.8e-14       4     104 ..     354     455 ..     351     456 .. 0.93

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 4.2e-18
                 HHHHHHHHHTSHHHHHHHHHHHHHHH.HHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSSEEEETTTTEE CS
         PCI   4 sdllkalrsgnlsgfseelkdleeel.laddglaqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIrdgeirakidqesgiv 101
                   l+ +l++g+++ f  +l+ +ee++ l d++l+++   + +++r+ ++ q+ ++y+ + l+++a+++++svd ++k l+++I++g+i+++id++sg+v
  KKY24359.1 354 ASLVTSLYTGDYKTFFLSLAAVEENFlLVDRYLQEHRAWYIREMRLLAYSQLLQSYRVVGLKSMADAFGVSVDFLDKDLARFIANGRINCTIDRVSGTV 452
                 57999*****************7776156889999**************************************************************** PP

                 EEC CS
         PCI 102 vfk 104
                 + +
  KKY24359.1 453 ETN 455
                 876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       905  (0.0504769); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3204.90
//
Query:       KKY24360.1  [L=223]
Description: hypothetical protein UCRPC4_g02470 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-14   50.6   4.9    5.7e-11   41.7   2.3    3.2  3  Hexapep    Bacterial transferase hexapeptide (six repeats)
    2.2e-12   47.0   0.5    3.5e-12   46.4   0.5    1.3  1  Mac        Maltose acetyltransferase
      7e-12   44.9   8.5    1.3e-10   40.8   2.5    3.2  3  Hexapep_2  Hexapeptide repeat of succinyl-transferase


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0038        23      17      30 ..      96     109 ..      96     115 .. 0.61
   2 ?    2.9   0.0     0.017     1e+02       3      19 ..     120     136 ..     118     138 .. 0.86
   3 !   41.7   2.3   9.5e-15   5.7e-11       2      36 .]     157     191 ..     156     191 .. 0.96

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0038
                 ETTEEE-TTEEEET CS
     Hexapep  17 ggnVkIGdnvkIga 30 
                 g nVk+G++v +  
  KKY24360.1  96 GKNVKLGEGVFLNC 109
                 45666666666555 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.017
                 EEETTEEE-TTEEEETT CS
     Hexapep   3 vIGsnvlIgpfaviggn 19 
                  IG  +l gp++ ++++
  KKY24360.1 120 SIGARTLAGPNCSFYSG 136
                 79**********99877 PP

  == domain 3  score: 41.7 bits;  conditional E-value: 9.5e-15
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 ++IG+++++g +++i+++V++G++v+Igag+v+++
  KKY24360.1 157 ITIGEDCWLGGNVIILPGVTLGRGVTIGAGSVVTK 191
                 68*******************************86 PP

>> Mac  Maltose acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.5   5.8e-16   3.5e-12       1      51 [.      14      63 ..      14      64 .. 0.95

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 5.8e-16
                HHHTTS-BETTTSHHHHHHHHHHHHHHHHHHTSTTT-HHHHHHHHHHHSSB CS
         Mac  1 KMlaGelYdafsDpeLvaeRlrarelcrryNqtrpsdkdeRrelLrellGs 51
                KM +G+lY+af  p L a+R++++e+crr+N++ +    ++ e+L+++lG+
  KKY24360.1 14 KMARGDLYYAF-TPNLTADRMKCQEACRRFNNAGDVSLRRQFEMLKDILGD 63
                9*********8.5*******************989999999********96 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1     0.045   2.7e+02      21      33 ..      96     108 ..      96     109 .. 0.84
   2 !    4.8   0.0    0.0041        24       2      14 ..     119     131 ..     118     136 .. 0.91
   3 !   40.8   2.5   2.2e-14   1.3e-10       1      34 []     156     191 ..     156     191 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.045
                 -TT-EE-TT-EE- CS
   Hexapep_2  21 GdncvvgaGvvit 33 
                 G+n+++g Gv++ 
  KKY24360.1  96 GKNVKLGEGVFLN 108
                 8899999999985 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0041
                 EEE-TT-EE-TT- CS
   Hexapep_2   2 viIGdnCliGana 14 
                 ++IG+++l G+n+
  KKY24360.1 119 ISIGARTLAGPNC 131
                 79**********9 PP

  == domain 3  score: 40.8 bits;  conditional E-value: 2.2e-14
                 .EEE-TT-EE-TT-EE..SEEE-TT-EE-TT-EE-S CS
   Hexapep_2   1 pviIGdnCliGanagi..GvslGdncvvgaGvvita 34 
                 p++IG++C +G n +i  Gv+lG+++++gaG+v+t+
  KKY24360.1 156 PITIGEDCWLGGNVIIlpGVTLGRGVTIGAGSVVTK 191
                 89*********************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1576.82
//
Query:       KKY24361.1  [L=201]
Description: putative coatomer subunit zeta [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-11   43.9   1.6    2.9e-11   43.5   1.6    1.3  1  Clat_adaptor_s   Clathrin adaptor complex small chain
  ------ inclusion threshold ------
      0.016   14.0   0.0      0.031   13.1   0.0    1.4  1  DUF4804          Domain of unknown function (DUF4804)
       0.14   12.1   0.0         17    5.4   0.0    2.1  2  AP-5_subunit_s1  AP-5 complex subunit sigma-1


Domain annotation for each model (and alignments):
>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   1.6   4.9e-15   2.9e-11      24     136 ..      51     162 ..      10     168 .. 0.87

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 4.9e-15
                     -CHHHHHHHHHHHHHHHTT-SSS-SEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCT.S-SHHHHHHCHHHHHHHHHCC CS
  Clat_adaptor_s  24 ddkkkqklieevyelvsaRdsklsniveledlkviYkryasLYFvvivdeqeneliilelihlfvesLdkyfg.nVceldlvfnfekvylildEi 117
                      + k+qk +e+    ++a+  ++s+++ +++  v++k+  ++  +v+ + +ene+++ +++  + +sL  +++ +  ++ +++n++ v l++dEi
      KKY24361.1  51 THLKEQKSFEKGLLEKTAK--QTSDVILYDNRIVVFKNEGDVMLYVVGSAEENEILLYNVVLALRDSLAILLKnSTDKRTIIENYDLVTLAIDEI 143
                     4556777777777777777..458************************************************9456799**************** PP

                     EETTEES---HHHHHHCHH CS
  Clat_adaptor_s 118 vsgGeiletskkevlkrve 136
                     v+ G ilet++  v  rv+
      KKY24361.1 144 VDDGIILETDPVIVSTRVS 162
                     **********988887776 PP

>> DUF4804  Domain of unknown function (DUF4804)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.3e-06     0.031     213     289 ..      20      96 ..      13      99 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.3e-06
     DUF4804 213 rkedyrrlwrefYeetkdllyeeveadnkrflelknkevfDnlvmkkrlaisfdtllleaearakkagklayihvvg 289
                  k++  r+++++Y+ ++  +++ ++   + +++lk+++ f++ +++k    + d++l +      k++  + + vvg
  KKY24361.1  20 PKSESPRIFAKYYSPPHTSTTSGIDLPAQPYTHLKEQKSFEKGLLEKTAKQTSDVILYDNRIVVFKNEGDVMLYVVG 96 
                 5677889******9999999999***********************************9999999999999999998 PP

>> AP-5_subunit_s1  AP-5 complex subunit sigma-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0028        17       2      32 ..      10      41 ..       9      76 .. 0.68
   2 ?    5.0   0.0    0.0037        22     106     168 ..      78     140 ..      71     150 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0028
  AP-5_subunit_s1  2 Vlaflihtvesekesrvlysrvfgae.ekdes 32
                     V a+l++t +++ es+ ++++++++  ++++s
       KKY24361.1 10 VTAVLVLTTDPKSESPRIFAKYYSPPhTSTTS 41
                     899*********************65223322 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0037
  AP-5_subunit_s1 106 eekivlWlgvgslgftlvceahENlllaeqtLrtlirsllehlrllkqgsevllkadrveaiL 168
                      +++iv+ ++ g++ + +v  a+EN  l  ++   l  sl   l+  + +  +++  d v   +
       KKY24361.1  78 DNRIVVFKNEGDVMLYVVGSAEENEILLYNVVLALRDSLAILLKNSTDKRTIIENYDLVTLAI 140
                      5789********************999998888888888877777777777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1592.98
//
Query:       KKY24362.1  [L=1137]
Description: hypothetical protein UCRPC4_g02472 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-39  132.1   0.1    6.4e-39  132.1   0.1    2.8  3  NFACT-C    NFACT protein C-terminal domain
    7.9e-34  117.2  11.5    5.6e-25   88.0   0.0    2.5  2  FbpA       Fibronectin-binding protein A N-terminus (FbpA)
    3.8e-31  107.9   0.0    9.5e-31  106.7   0.0    1.7  1  NFACT-R_1  NFACT protein RNA binding domain


Domain annotation for each model (and alignments):
>> NFACT-C  NFACT protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3      0.86   5.1e+03      48      63 ..     508     523 ..     486     553 .. 0.48
   2 ?   -3.3   0.8       1.4   8.6e+03      46      73 ..     932     957 ..     923     977 .. 0.43
   3 !  132.1   0.1   1.1e-42   6.4e-39       3     106 .]     997    1106 ..     995    1106 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.86
     NFACT-C  48 vKkGkavkeilekflk 63 
                 +K  k++++ ++ + +
  KKY24362.1 508 AKEEKTIQSSTKALKS 523
                 2222222222222222 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.4
     NFACT-C  46 GsvKkGkavkeilekflk....kkkkvdekee 73 
                 G++Kk  a+ +  ++  k    k      +++
  KKY24362.1 932 GQQKKQAAAVDKAARDAKlaadK------ERR 957
                 55665544433333222212221......111 PP

  == domain 3  score: 132.1 bits;  conditional E-value: 1.1e-42
     NFACT-C    3 eelslldsLvgtplpeDeileaipvcAPyaaLqkykYkvKlqPGsvKkGkavkeilekflk......kkkkvdekeedkeklwprekelikalkeee 93  
                  +e+++ldsLvgtp+ +Deil+aip+cAP++aL++ kYkvK+qPG+ KkGkav+ei++++l+      k+k vde+++d+e++wpre e+ik+++ ee
  KKY24362.1  997 REIANLDSLVGTPAVGDEILAAIPICAPWNALARHKYKVKIQPGNLKKGKAVREIVNRWLEagksdsKRKIVDETATDRERIWPREIEVIKGWRVEE 1093
                  67889************************************************************966699************************** PP

     NFACT-C   94 lvntlpvgkvkvv 106 
                  ++ ++pv+k++v+
  KKY24362.1 1094 IIGIVPVSKLRVM 1106
                  ***********98 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.0   9.4e-29   5.6e-25       2     184 ..       7     176 ..       6     195 .. 0.87
   2 !   28.8   9.2   8.8e-11   5.2e-07     254     399 ..     293     513 ..     246     540 .. 0.80

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 9.4e-29
                 HHHHHHHHHHHHHHHTTXEEEEEEEEETTEEEEEEEETTEEEEEEEEXXTTTXEEEEXXXXXXXXSSXXHHHHHHHHHHTTXEEEEEEEXTTSSEEEEE CS
        FbpA   2 glvlaavvaELqkellggridkiyqpekdelvltlranrgrhkLllsahpsyarihltekpkenpkeppnFcmlLRkyLkgarivsieqlgfdRivels 100
                 +l+++ +++EL+++l+  r+ +iy    +   l+l + + r++Ll+     + r hlt+ +++  ++p++F+  LRkyLk  r++s++q+g dR++e++
  KKY24362.1   7 SLDVRVICHELSRRLISLRVANIYDLSTRIFLLKLAKPGSREQLLVDS---GFRCHLTDFNRTTAAAPSAFVSRLRKYLKSRRVTSVKQIGTDRVIEIE 102
                 6899********************************************...************************************************ PP

                 EEEEXTTSXEEEEEEEEEXXGGGXEEEEEETTTEEEEESSXBXXXSSXSXXBSTTXBXXXSXXXSXBXTT.SXXH.HHHHHHHHH CS
        FbpA 101 iekrdElgdeeeytLivEimgrhSNiiLvdeenkIidaikhvspkqsrvReilpgekYelPpsqdklnPl.eaeeleefkellsk 184
                 +++        +y+L++E ++  +NiiL+d++ +++++++ vs+  + +  +  g +Y +  +q+ ++   ++++ e++k++lsk
  KKY24362.1 103 FSDG-------QYRLFLEFFAA-GNIILTDKDFTVLALLRVVSEGHE-DVDVKLGGTYSIKGKQN-VDGIpQLTD-ERLKDALSK 176
                 ****.......***********.*******999*********99854.47888888888887744.333335565.666666544 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 8.8e-11
                 ...XSSSEESSXXTTXX.SSXXXXSXHHHHHHHHTTTXXX--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGH.........HHHHCCHH--- CS
        FbpA 254 keekpeefsvvplkslselekesfdslsealdeyYakkaerdrveqkrsdlekrveneleklekklkklekelekaeka.........enyrligellt 343
                 ++     f++ +++s+ el+  +fds+++++de+Y+   e++++e++  + e + +++le  +++ +k    l +a++           n ++++e + 
  KKY24362.1 293 DD--YHPFKPSQVQSKPELSILEFDSFNKTVDEFYSSI-ESQKLESRLTEREITAKRKLEFARREHEKRVGALREAQELhirkaeaieVNSHRVEEAIA 388
                 33..23334444666668999**************864.45555555555555556666666666666666666666556666677788999******* PP

                 --------------------.--.....................................................................------- CS
        FbpA 344 aylyaikkgmsevelenyydege.....................................................................evtIpLd 373
                 a++  i +gm++ ++ + +++++                                                                     ++ I +d
  KKY24362.1 389 AVNGLIGQGMDWQDIGKLIENEQkrenpvaqmvklplklyentvtlllhepffdddddddgelvdndtdeepesdsekssdaeepdrqkkehTLAIDVD 487
                 ********************733599******************************************************************9****** PP

                 --------HHHHHHHHHHHHHHHHHH CS
        FbpA 374 prkspsenAqkyfkkykKlkraveav 399
                  ++sp  nA +y+++ k ++ ++e+ 
  KKY24362.1 488 LALSPWANARQYYEQKKTAQAKEEKT 513
                 *************9988776665543 PP

>> NFACT-R_1  NFACT protein RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.7   0.0   1.6e-34   9.5e-31       1     109 []     554     667 ..     554     667 .. 0.95

  Alignments for each domain:
  == domain 1  score: 106.7 bits;  conditional E-value: 1.6e-34
   NFACT-R_1   1 kvfwFkssdgylvimGkDkqeneelikkyleesdvwfhvdkessahvylrlsegele.eipeelleeaaqlakanSia.gnklssvdvvyvpasnlskt 97 
                 k+f+F+ssdgylv++GkD+q+ne l+++yl+++d+++h+d +++a+v++++  ++ +  +p+++l++a+ l ++ S a ++k   + +++v+a+++skt
  KKY24362.1 554 KFFYFISSDGYLVVGGKDAQQNETLYRRYLKKGDIYVHADLQGAASVIVKNMINNPDaLVPPSTLSQAGSLSVCSSAAwDSKA-VMGAWWVNADQVSKT 651
                 8*************************************************555554449*******************99998.*************** PP

   NFACT-R_1  98 ap....ldtGsvgfkg 109
                 ap    l+tG +++kg
  KKY24362.1 652 APtgeyLKTGGFTIKG 667
                 *************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1544  (0.0861175); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.50
# Mc/sec: 6864.28
//
Query:       KKY24363.1  [L=385]
Description: hypothetical protein UCRPC4_g02473 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00079   19.6   0.2     0.0028   17.9   0.0    2.1  2  BTB              BTB/POZ domain
  ------ inclusion threshold ------
      0.041   14.1   0.0      0.085   13.0   0.0    1.5  1  Auxin_inducible  Auxin responsive protein


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.83   7.5e+03      52      72 ..      79     105 ..      65     119 .. 0.56
   2 !   17.9   0.0   3.1e-07    0.0028      30      79 ..     174     222 ..     155     276 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.83
                 E......EEEETTSGHHHHHHHHHHHH CS
         BTB  52 s......eielddvepeafealLefiY 72 
                 +      +i+l+d +  +  ++++  Y
  KKY24363.1  79 DlsrdasQIDLSDATTMDASQVVQSDY 105
                 133334467777766666666666555 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 3.1e-07
                 HHHH-HHHHHHHTSTTTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC- CS
         BTB  30 LaarSpyFkalftskeieessvseielddvepeafealLefiYtgeleit 79 
                 L + SpyF+a f ++ ++e+ v++  l++ ++ af ++Le +  g+++++
  KKY24363.1 174 LLCLSPYFQAVFRGG-FKEQAVKRSVLPEANSAAFSMVLEALLLGRFNMH 222
                 6778***********.************************9988888886 PP

>> Auxin_inducible  Auxin responsive protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.4e-06     0.085      25      57 ..     150     183 ..     125     211 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.4e-06
  Auxin_inducible  25 svpekGhvvVyvgderrRFvvpleyLn.hpvfre 57 
                      ++     v V vg+e+rRF+vp ++L   p f++
       KKY24363.1 150 AMMRDTKVEVIVGKEKRRFLVPESLLClSPYFQA 183
                      344466788**************99953566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 2394.20
//
Query:       KKY24364.1  [L=419]
Description: putative translation initiation protein sua5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-54  184.5   0.0    2.1e-54  183.7   0.0    1.4  1  Sua5_yciO_yrdC  Telomere recombination
    9.9e-32  110.3   0.0    1.7e-31  109.5   0.0    1.3  1  SUA5            Putative GTP-binding controlling metal-bindin


Domain annotation for each model (and alignments):
>> Sua5_yciO_yrdC  Telomere recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.7   0.0   2.4e-58   2.1e-54       8     179 .]      59     245 ..      55     245 .. 0.92

  Alignments for each domain:
  == domain 1  score: 183.7 bits;  conditional E-value: 2.4e-58
                     EEEEE-SSSEEEEEETTSHHHHHHHHHHHTSHCCC--EEEESSCCCCCCCC-TC--HHHHH...............HHHCT-SSSCEEEEE..E- CS
  Sua5_yciO_yrdC   8 ivaiptetvYgLacdatneeaverlreiKgrpsdkplavlvasledlkklaeseveeealk...............llerfwPGpitlllkrske 87 
                      va+ptetvYgL++dat++ av  ++++K+rp+d+pl+v+v+sle+l++l++ + ++++ +               l+ rfwPGp+t+ll+++++
      KKY24364.1  59 PVAFPTETVYGLGADATRSPAVLGIYKAKRRPADNPLIVHVSSLEHLRRLLR-KPSDAVSNgvsahedpipavyapLISRFWPGPLTILLPNPAH 152
                     69*************************************************9.33222222355566666667777****************999 PP

                     T.S-HHHHTTTTEEEEEE-SSHHHHHHHHHCTS-EEEEES-STTS-S-SSHHHHHHHC-TTSECB-SS---SSS---EEEETTSSTSSECEXX CS
  Sua5_yciO_yrdC  88 k.lpkevapglktvGvrlPdtplarlLlealgeplvaTSanlsgepsitdaeeveeelgeivdlildggeiavgvdstVvdltegkpkilRrG 179
                     + l++ev++gl t+G+r+P++plarlL+  +++pl+a+San+s++ps+t+a++v ++l+++++lildgg+++vgv+stVvd ++++p ilR+G
      KKY24364.1 153 SpLASEVTSGLPTFGCRIPSSPLARLLIAIADRPLAAPSANASTRPSPTTAQHVLDDLNGRIELILDGGPCKVGVESTVVDGLSDPPAILRPG 245
                     99*****************************************************************************************98 PP

>> SUA5  Putative GTP-binding controlling metal-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   0.0   1.9e-35   1.7e-31       4     133 ..     250     414 ..     248     414 .. 0.79

  Alignments for each domain:
  == domain 1  score: 109.5 bits;  conditional E-value: 1.9e-35
                 HHHHHHS............---.............---....----------S-SSEEEEE--GGGHHHH...............HHHHHTTS-EEEEE CS
        SUA5   4 eeleevl............davek.........keekp....raPGmkyrHYaPkapvvlveaeeeeeaake..........ekleekkksgkkvgvla 67 
                 ee++++             +   +         k+++p    raPGmky+HY+P+a+v+l+e+++ e+aa++          ++ + k  ++ k+g ++
  KKY24364.1 250 EEIRSCGgpwsrvvkaykdK---AehaadsghvKSSAPapgpRAPGMKYKHYSPRARVILFETGTTEQAARDiaithynqstSASATKAPATPKIGTIS 345
                 66776665555444444320...0223344455333333455***********************9999988********9999999999********* PP

                 EGGGTGG...TSEEEEE..E-TT-HHHHHHHHHHHHHHHHHS--SEEEEE---..-STTHHHHHHHHHHHT CS
        SUA5  68 tseskea...assvlslslgsrsdleeaarnLFaaLrelDeegvdlilvegvp..eeglglAvmnRLrkAA 133
                 t++++++   +  + s++lg  +++e +ar+LF+aLr+lDe+gv++il+eg++  e +l++AvmnRLrkAA
  KKY24364.1 346 TRTWSSNlnlDFPTESIALG--AEAEHIARGLFSALRDLDEKGVETILIEGIDdsEGDLAAAVMNRLRKAA 414
                 *****998774444444456..9*****************************9655588***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2759.30
//
Query:       KKY24365.1  [L=1103]
Description: putative snf2 family helicase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-66  222.1   0.2    2.7e-64  217.1   0.2    2.9  1  SNF2_N      SNF2 family N-terminal domain
    9.1e-15   55.0   0.0      2e-14   53.9   0.0    1.6  1  Helicase_C  Helicase conserved C-terminal domain
    1.2e-06   28.6   3.1    1.6e-06   28.2   0.0    2.6  2  ResIII      Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
       0.14   11.8   1.6       0.17   11.5   0.0    1.9  2  DEAD_2      DEAD_2


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.1   0.2     6e-68   2.7e-64      52     350 .]     287     609 ..     267     609 .. 0.80

  Alignments for each domain:
  == domain 1  score: 217.1 bits;  conditional E-value: 6e-68
                 HHTT--EEE---TTS--HHHHHHHHH..............HHTTTS---..........S-EEEE--HHHHHHHHHHHHHH-TTS.-EEE--SSHHHH- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
      SNF2_N  52 kqsvrGGiLaDemGLGKTvqvlalilaqr...........akeekdkek...krkdtlagptLivvPaslldqWeneierhvsss.alrvlvyggqkkm 135
                   + rGGiLaD+mGLGKT+q++al+l++            a+ +k++ek   k    l ++tL+v+P +l++qWe ei+  v++s alrv v++g +  
  KKY24365.1 287 GVHPRGGILADDMGLGKTIQSIALMLTNPlpkdyspeppqAEATKKPEKgklKLSPGLDKATLVVAPLALIKQWEAEIKDRVEDShALRVKVHHGPQ-- 383
                 44569*********************99966666666554222222222544455566777*****************9999866158888888864.. PP

                 ----------------EEEE-HHHHHHHT........TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 136 kkkntkvapklladydvvittYdvlsreaelq..kkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLre 232
                     + ++ + l++ dvvittY++l +e+  +  + r  +  v+w r++lDE+ht+kn ++ka++a+  L++++rw+l+GTP+qn+l +l +L+ fLr+
  KKY24365.1 384 ----RANKSADLKKSDVVITTYQILVSEHGASegNLRVGVFGVNWYRIILDEAHTIKNRNAKATQAAYALNAEYRWCLSGTPMQNNLDELQSLIRFLRI 478
                 ....45567899**************9986668789999************************************************************ PP

                 TTT--HHHHHHHTHHHHHHH.HHHHHHHHHTT-STTEE---GGGT............--........S---EEEEEEEEE--HHHHHHHH......... CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx............xx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 233 epfgekqtfdkllqrpieaq.aekgrsrLlqllqrlmlrrakkdv............ek........nlPpkteeiiflklskverksYnrllevlrkk 310
                 +p+++  t++++++rp+++      ++rL   l+ +m rr+k+ +            e         ++ ++++e i  +++++er +Yn +le+ +  
  KKY24365.1 479 KPYDDLATWRDQITRPMNNGrGGLAVRRLQVYLKAFMKRRTKDILkqegalrsgpsgETedgkptgfKIVKRSVEKIEAEFTDEERLFYN-RLEQRTDR 576
                 ******************441445689******************98777766665511556677778999999****************.44444444 PP

                 ...........HHHHHH-HHH-HHHHHHHHHHHHH---XX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 311 alakllkrseaalkssskskekilelllelrqacnhpqlv 350
                  l ++ k +  al+      +  l lll+lrqacnhpqlv
  KKY24365.1 577 SLEQMMKGD--ALSY-----ASALVLLLRLRQACNHPQLV 609
                 444444443..2333.....33899*************96 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   4.4e-18     2e-14       2     110 ..     835     945 ..     834     946 .. 0.94

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 4.4e-18
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn..kgesdvLiatdvaerGidipkvnlVinfdlprnvt 98 
                 k+++ll++l + ++++k ++f+ ++++l+ ++ +l+++++ +++++g + ++ re++l++ +  +g++ +L + ++++ G++++ ++ V+++++ +n+ 
  KKY24365.1 835 KINRLLQILRNDSSKHKYIVFSFFTSMLDLIEPFLKRENLAFTRYDGGMRNDLREASLDRLRnhEGTRILLCSLRAGSLGLNLTAASRVVILEPFWNPF 933
                 8999*****9******************9999999999***********************9666777788999************************* PP

                 HHHHHHTTSSST CS
  Helicase_C  99 syiqriGRtgRa 110
                    q+i+R++R 
  KKY24365.1 934 VEEQAIDRVHRL 945
                 ***********7 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   3.6e-10   1.6e-06      22     169 ..     288     461 ..     261     463 .. 0.78
   2 ?   -3.1   2.8       1.5   6.8e+03      70     122 ..     697     772 ..     683     792 .. 0.55

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 3.6e-10
                 .TTSEEEEEESTTSTHHHHHHHHHHHH-S.............................-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B-- CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierllkkgkee........................kflflvprkslleqtleefkkflseaykeigkkvsgdkkka 96 
                  + + g+++   G GKT+ +++l+      ++++                        k+ ++v  ++l++q++ e+k+  ++ ++   k+ +g ++ +
  KKY24365.1 288 VHPRGGILADDMGLGKTIQSIALMLTNPLPKDYSpeppqaeatkkpekgklklspgldKATLVVAPLALIKQWEAEIKDRVEDSHALRVKVHHGPQRAN 386
                 4555788889999****9997777654443333457999999****************99999999******************988999999999999 PP

                 .......-SEEEEEHHHHHHTH........HHHTTT-S....EEEEETGGGTTS..TTTHHHHHT---SEEEEEESS- CS
      ResIII  97 kekdstnkkilvttiqsldadseeeeeeseellrdrfd....viiiDEaHrlgak.kswreilekfkeavllglTATp 169
                 k+ d +++++++tt+q l ++       +  l+ + f      ii DEaH ++   ++ ++++ ++++ ++  l++Tp
  KKY24365.1 387 KSADLKKSDVVITTYQILVSEH---GASEGNLRVGVFGvnwyRIILDEAHTIKNRnAKATQAAYALNAEYRWCLSGTP 461
                 999******************9...444444444555567779*********99744777778888999999999998 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.5
                 HHHHGGGGTGG..........GEEEESSS-B--..........-SEEEEEHHHHHHTH........................ CS
      ResIII  70 tleefkkflseayke......igkkvsgdkkka...kekdstnkkilvttiqsldadseee....................e 122
                  ++e k   ++++++      + k +      +     +d+++ + lv ++++l+ ++ ++                    e
  KKY24365.1 697 QKKEKKTSGKSTKNKaekfraTAKRI------IddsDDEDEEKGEWLVPQEEQLYPQLGKAggigdenaegggewigsddsE 772
                 33333222222222211122233333......24444458888888888888888888555777776666666666666663 PP

>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.9e-05      0.17     119     165 ..     391     441 ..     367     448 .. 0.83
   2 ?   -3.6   0.8       1.6   7.4e+03      57      80 ..     688     711 ..     639     726 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.9e-05
                 HCCTSEEEEEHHHHTSCCCHHHHH....T..GCGCEEEECTCCCHHHHHHH CS
      DEAD_2 119 ledadiiilpYqyLldekireslk....gislknsivilDEAhNiedvcee 165
                 l++ d++i  Yq+L++e+ +++ +     + ++   +ilDEAh i++  ++
  KKY24365.1 391 LKKSDVVITTYQILVSEHGASEGNlrvgVFGVNWYRIILDEAHTIKNRNAK 441
                 6889*************99998776675555666789********997655 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.6
                 HHHHHHHCCHHCCHTTTTTT-SCC CS
      DEAD_2  57 eaCkelkkkkaeekeekCsffenl 80 
                 +a ++lkkk+++ek+++ +  +n+
  KKY24365.1 688 SAARRLKKKQKKEKKTSGKSTKNK 711
                 233444444444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1562  (0.0871214); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:00.52
# Mc/sec: 6371.16
//
Query:       KKY24366.1  [L=554]
Description: putative nuclear membrane fusion protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-08   31.7   0.2    6.9e-08   31.7   0.2    2.3  2  Tht1       Tht1-like nuclear fusion protein
  ------ inclusion threshold ------
        0.2   11.8   0.6        0.5   10.6   0.6    1.6  1  Pilosulin  Ant venom peptides


Domain annotation for each model (and alignments):
>> Tht1  Tht1-like nuclear fusion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.2   7.7e-12   6.9e-08      54     180 ..      67     230 ..      48     284 .. 0.76
   2 ?    0.5   1.4     0.022     2e+02     261     378 ..     258     369 ..     228     418 .. 0.51

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 7.7e-12
        Tht1  54 skyqa.llkkstcvkevlklllskcsl....lntelsid.trvesaiklslcdfeasqllePeecv........................lGsqsecvs 122
                 ++y a l   stc + +++ l+  c      +n    +   r   a +l++c+ + +++ +P++c                               c+ 
  KKY24366.1  67 KVYVAsLQAASTCHRVAAEDLIDSCRSpshpINDDDHVQqLRSLYAARLAICETQEAGIVAPSDCShlfspkalpedanhggfsqlrfseTYGLNRCLA 165
                 5565415568***************641112444444444566779*******************999***********88888775444334568*** PP

        Tht1 123 klessstwwlsfssnfqdlsslcrlallelekelilklflnvtllqdsfletkllhl.......r 180
                  le  ++ w+s+s n q+ + +c+    ++e+ + l+l+ n+  +q+   e   + l       +
  KKY24366.1 166 ALEKRTQSWTSYSNNRQQSAVICQAVRAHVEQTQLLNLHRNLIVMQEGVSEALAQQLeralartQ 230
                 *******************************************9999885555555533334333 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.022
        Tht1 261 ieelagykndlkeklnekddsenaialsaigkytsefsafmekrlkdlvetsedslkesvssnidlvnsgfqeled...lsiqlkkelqslkkllsesq 356
                  e +a    ++  ++   ++  n      +g +   f++    rl+ l+++ + +  + +ss  dl     q+ e+   +++ l + l  ++++ s   
  KKY24366.1 258 KEHMALIAKEFEVQVSGIFSKVN----VVVGAFGGVFAT-ATDRLHGLINLVDQTYFNIISSRADLAAMEAQQAEQsqtMTVALHNSLVVMQREISAMG 351
                 44444444444444444444444....233444444433.44567777777777777777777777766665544222267777777777777776554 PP

        Tht1 357 nleaeellqwksdflsvlkdsl 378
                     +el   +   ++v   +l
  KKY24366.1 352 ----IELYTNRELTNQVAGMQL 369
                 ....333333333333333333 PP

>> Pilosulin  Ant venom peptides
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.6   5.6e-05       0.5       5      28 ..     485     507 ..     477     510 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.6e-05
                 XXXXXXXXXXXXXXXXXXXXXXXX CS
   Pilosulin   5 CLlLtLaiilvLtivhaPnveaka 28 
                 CL + + i+ + tivh Pnv+ ka
  KKY24366.1 485 CL-VIVEIVSIGTIVHIPNVNNKA 507
                 33.234677788*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1015  (0.0566122); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.52
# Mc/sec: 3208.47
//
Query:       KKY24367.1  [L=126]
Description: putative 60s ribosomal protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-17   64.3   0.0    6.5e-13   49.2   0.0    2.9  2  Ribosomal_L6  Ribosomal protein L6


Domain annotation for each model (and alignments):
>> Ribosomal_L6  Ribosomal protein L6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   2.3e-05      0.41      58      76 .]       1      19 [.       1      19 [. 0.97
   2 !   49.2   0.0   3.6e-17   6.5e-13       1      73 [.      27     111 ..      27     113 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.3e-05
                  HHHHHHHHHHHHHHHHHTC CS
  Ribosomal_L6 58 ligtvrslinnmikGVteg 76
                  ++gt r++ +n ++GV+eg
    KKY24367.1  1 MWGTMRAHLKNYVTGVSEG 19
                  79***************98 PP

  == domain 2  score: 49.2 bits;  conditional E-value: 3.6e-17
                   CSTTEEEEEET............TTEEEEEESSEEEEEE-CTTSEEEEEECSTEEEEEECSESCHHHH....HHHHHHHHHHHHHHHHH CS
  Ribosomal_L6   1 iPvgvrvsikg............gqlvlvlGpkgeltreipegvtvevkvegnkvtvivvsgidkekv....AligtvrslinnmikGV 73 
                   ++vg+r+si++              l l lG+ +++++ ip+gv+  v+    ++t i ++g dke v    A+i+ +r+++++++kG+
    KKY24367.1  27 VGVGYRASIENsattakaeypgqRFLALKLGFAHPVEMGIPQGVKASVP----QPTRILLEGPDKEVVtmfaAQIRDWRKPEPYKGKGI 111
                   68888888888888888888887889999********************....9**********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.32s 00:00:00.84 Elapsed: 00:00:00.53
# Mc/sec: 711.41
//
Query:       KKY24368.1  [L=408]
Description: putative 3 (2)bisphosphate nucleotidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-53  180.0   0.8    1.6e-52  178.7   0.8    1.5  1  Inositol_P       Inositol monophosphatase family
  ------ inclusion threshold ------
       0.07   12.8   0.0       0.13   12.0   0.0    1.3  1  Surface_antigen  Sporozoite TA4 surface antigen


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.7   0.8   1.8e-56   1.6e-52       6     270 ..      65     405 ..      60     406 .. 0.85

  Alignments for each domain:
  == domain 1  score: 178.7 bits;  conditional E-value: 1.8e-56
                 HHHHHHHHHHHHHHHHHHTTTSEEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCC........................... CS
  Inositol_P   6 tkaavelaakagevlreefsenelvieekskegeedlvtaadeaveelilealaekfpshkilgeetlakge........................... 77 
                 + a+ ++++ a+ + +++f+ ++++   ++   ++ +vt  d  +++li++a++ +fp+++++gee+ ++                             
  KKY24368.1  65 LVAQLAVQR-AAILTKKVFH-EKAKGTVSK--DDKSPVTIGDFGAQALIIQAIKHNFPKDEVVGEEEASSLReqkslssqiwelvkdiklddaeadail 159
                 554545555.4446677777.444444444..5788*******************************9999999************************* PP

                 .................CT.SSSSSEEEEEEEEETHHHHHHT-SG-EEEEEEEETTEEEEEEEEET.T....................TTEEECEETTT CS
  Inositol_P  78 .................kseltedgltwivDPiDGTknFvrgipqvaVsigllvegkpvlGviaqP.l....................lgqlysaakgk 138
                                  +s ++++g+tw +DPiDGTk+F+rg  q+aV+++l+v+g + +Gv+++P l                    +g l+sa +g+
  KKY24368.1 160 ggplpsedamlqaidqgNSAGGPKGRTWALDPIDGTKGFLRG-GQYAVCLALMVDGDVKVGVLGCPnLpvddsapltegiganqtdegNGVLFSAIAGQ 257
                 ******************************************.9**********************6488****************9999********* PP

                 EEEETCEEEEECTTSEGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCH.............EEEBESSHHHHHHHHHHTSTSEEEEEC......EBH CS
  Inositol_P 139 Gaflngeklplsrappiseallvtlfavssrkdtseasllekvesavsae.............gvrsvgssalklaavaeGkadaylefg.....rekk 219
                 Ga +     pls+a+ + ++ +    +++ ++d+s+a+++e+ve+ +s +             +   +++s++k+  +a+G  d yl+ +     +ek+
  KKY24368.1 258 GADSR----PLSKAGLLLSKPI----SMRPVPDISQATFCESVEAGHSSKgdnaaiaeilgitSKPVQMDSQAKYGSIARGAGDLYLRLPvrkdyQEKI 348
                 **444....5666663333333....4566777777777777777777777777777766655333558********************999******* PP

                 HHHHHHHHHHHHTTEEEEESSSC......SSSTTSSEEEEESCHHHHHHHHHHHCCH CS
  Inositol_P 220 WDhAAGeaileeaGGvvtdakge......grlllargiiaanqkelaellaaavees 270
                 WDhAAG +i++eaGG+vtda+g+      gr+l+++++++a++k+ ++ +++av+++
  KKY24368.1 349 WDHAAGDLIVREAGGEVTDARGKrldfskGRTLKDNKGVVAAPKAVHSDVLKAVQKV 405
                 *********************************9999999999*********99975 PP

>> Surface_antigen  Sporozoite TA4 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.4e-05      0.13      62     107 ..     333     378 ..     326     385 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.4e-05
  Surface_antigen  62 dkeqklPvkkDsdkqvWksvCeallsadeaeesekakvknekfesg 107
                      d   +lPv+kD ++++W+++ ++l+  +  +e + a+ k  +f++g
       KKY24368.1 333 DLYLRLPVRKDYQEKIWDHAAGDLIVREAGGEVTDARGKRLDFSKG 378
                      55679*********************99989999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2673.54
//
Query:       KKY24369.1  [L=442]
Description: putative vhs domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-26   91.8   0.0    7.8e-26   90.6   0.0    1.6  1  VHS       VHS domain
    4.1e-05   23.8   0.2    0.00013   22.2   0.2    1.9  1  GAT       GAT domain
  ------ inclusion threshold ------
        2.1    8.0   7.5        5.8    6.6   1.4    2.6  2  FAM176    FAM176 family


Domain annotation for each model (and alignments):
>> VHS  VHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.0   1.3e-29   7.8e-26      10     140 ..       6     134 ..       2     135 .. 0.93

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 1.3e-29
                 HHHHHT-TT-SS--HHHHHHHHHHHHCSTCHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHCTTTCHCS.HHH CS
         VHS  10 liekATdeslreedlslileicDlinekeagpkeavrlikkkinsknphvallaLklldalvkNcGskfhleiaskeflnelvklilekknsklakvkk 108
                 ++e+ T+e+ +e+dls i ++ ++i+ +++gp+ea+r+i+kk+++ n h +l+aL++ld l++N+Gs+f   +a++ +l++l   + + ++s+  +v+ 
  KKY24369.1   6 AVERLTSEQYDEDDLSGIPDLIEVIRLQGTGPTEAARAIRKKLKYGNVHRQLRALTILDGLIQNAGSRFQRVFADEPLLERLRV-AGSDPVSD-PEVRA 102
                 699******************************************************************************976.44444444.48*** PP

                 HHHHHHHHHHHHTTT-TTGHHHHHHHHHHHHT CS
         VHS 109 kvlelleeWadafknkpelkkisdvykllkrk 140
                 k ++l  +W++a+k+ p ++++ ++y++l ++
  KKY24369.1 103 KCKQLFAQWSVAYKDTPGMERVTALYRQLPQR 134
                 ****************************9875 PP

>> GAT  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.2   2.1e-08   0.00013      24      72 ..     269     315 ..     235     320 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.1e-08
         GAT  24 ellkeLyetckamqpriqklieetadeedllaelLqlNDeLnnvlerYe 72 
                 e++k + e ck+++++i ++i+ ++ ++  l  l+ +NDeL n+l  +e
  KKY24369.1 269 EVMKRF-EVCKQLRRQILRYIQFVESDD-YLGGLIHANDELVNALMAFE 315
                 444444.68***************9999.9**************97776 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.5    0.0059        35      52     102 ..     135     183 ..     124     193 .. 0.59
   2 ?    6.6   1.4   0.00098       5.8      58      82 ..     395     419 ..     385     440 .. 0.48

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0059
      FAM176  52 erlkkkkkklkeesekasededeeeeeeeedsseseaeeelsefertlsvn 102
                 +++ + ++++++  ++++ d  +++++ ++d + ++++++ ++++rt s++
  KKY24369.1 135 KKPMPVRQQQSKVLQETEADVADDTNNRSDDPHGRSTSSH-HTTKRT-SLS 183
                 3444455555555555566666777777777777765554.444555.444 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.00098
      FAM176  58 kkklkeesekasededeeeeeeeed 82 
                 ++++ e+++++ ++e+eeeeeee++
  KKY24369.1 395 RQQEIESDQSDVSEEEEEEEEEEDN 419
                 2222222333322333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1035  (0.0577277); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 2876.51
//
Query:       KKY24370.1  [L=994]
Description: putative lipase esterase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-41  141.5   0.0    6.1e-31  107.9   0.0    2.8  3  Abhydrolase_3  alpha/beta hydrolase fold
      2e-16   59.9   0.0    5.4e-16   58.4   0.0    1.6  2  Say1_Mug180    Steryl acetyl hydrolase
    0.00023   20.2   0.1     0.0021   17.0   0.1    2.0  1  COesterase     Carboxylesterase family
  ------ inclusion threshold ------
      0.036   13.3   0.0      0.073   12.3   0.0    1.4  1  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.77   3.5e+03     129     172 ..       9      53 ..       4      68 .. 0.72
   2 !  107.9   0.0   1.4e-34   6.1e-31       1     120 [.     147     260 ..     147     288 .. 0.93
   3 !   30.3   0.0   7.7e-11   3.5e-07     138     203 ..     375     440 ..     352     443 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.77
                    SSSSCHHHHHHHHHHHSS.GGGGGSTTTSGGGCS-SST---EEEE CS
  Abhydrolase_3 129 gplltraaldlfwrlylp.eadrddplaspllaedlsglpptlvv 172
                    g+++t+a ++ ++++y++ +  r++p+a+  ++e l+ + + l++
     KKY24370.1   9 GAAVTPAVIQTYVSHYTNrKPLRQKPTAHISYHEGLKLIRQFLLY 53 
                    567889999999999997577777999998887667755555544 PP

  == domain 2  score: 107.9 bits;  conditional E-value: 1.4e-34
                    EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardeg 96 
                    ++y+HGG++ +gs d h+  +++ a++l+a+v++++YrlAP+ pfP  ++d+laa+ +l++       dp+ i+laGdSaGG +++ +++ +rd+g
     KKY24370.1 147 MLYVHGGAYFFGSTDEHRYQMQRHARKLKARVLAPRYRLAPQFPFPCGLQDCLAAYLYLLTM-----NDPTDIILAGDSAGGGMVMSILVTLRDQG 237
                    79***********************************************************9.....6**************************** PP

                    ---EEEEEEESE-SSTSSTTSHHH CS
  Abhydrolase_3  97 epkvagqvliyPvtdlertesesi 120
                    +p +ag +li+P++dl +++ +s 
     KKY24370.1 238 HPLPAGAILISPWVDL-THSFPSL 260
                    **************99.5545554 PP

  == domain 3  score: 30.3 bits;  conditional E-value: 7.7e-11
                    HHHHHHHSSGGGGGSTTTSGGGCS-SST---EEEEEETT-TTHHHHHHHHHHHHHTT--EEEEEET CS
  Abhydrolase_3 138 dlfwrlylpeadrddplaspllaedlsglpptlvvvaefDplrdegeayaerlraagvevelieye 203
                    +  +++y+ ++ +++pl+sp+l+++l glpp l+++++ ++lrde++ +a++ +   + v  +ey 
     KKY24370.1 375 KDQIQMYATNELISHPLVSPVLQASLGGLPPLLILTGGGEILRDEQIYLAHKAANPAKYVPGKEYL 440
                    556899**9**************9****************************99887777777775 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   1.2e-19   5.4e-16     122     239 ..     142     255 ..     117     275 .. 0.85
   2 ?   -2.3   0.0      0.34   1.5e+03     305     372 ..     406     473 ..     405     475 .. 0.66

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 1.2e-19
  Say1_Mug180 122 D..pvllylHGGgfalklipvtlvfLsnlrklfpdmailvsDYtvtaakdqskkYplqvleslavydylvkskgfknvvvlGdSaGGnlvLslllkls 217
                  D  +v+ly+HGG + ++ +      ++   ++++   +l + Y +      +  +p  + ++la y yl  +   +++++ GdSaGG +v+s+l+ l+
   KKY24370.1 142 DgrRVMLYVHGGAYFFGSTDEHRYQMQRHARKLK-ARVLAPRYRLAP----QFPFPCGLQDCLAAYLYLLTMNDPTDIILAGDSAGGGMVMSILVTLR 234
                  3348**************9999888888887775.5789****9988....789******************************************** PP

  Say1_Mug180 218 klnkvvlPkkaiaiSPWlnlti 239
                  + ++  lP +ai+iSPW++lt 
   KKY24370.1 235 DQGH-PLPAGAILISPWVDLTH 255
                  *777.79************993 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.34
  Say1_Mug180 305 llityGddEilkdqikllidkiselkeksysepknvlidk..qGiHigPilkyssnldkWskllsvkeil 372
                  lli+ G  Eil+d+   l++k +  ++ +y  +k+ l +    G+      +   +l+ W  l  v++ l
   KKY24370.1 406 LLILTGGGEILRDEQIYLAHKAA--NPAKYVPGKEYLDQYdpDGSVLSKYKPTPVQLQVWDDLCHVAPTL 473
                  79999********9999999987..666677666655333445665555555555666666666655555 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   4.7e-07    0.0021     100     205 ..     139     232 ..     130     257 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.7e-07
                 STTSSEEEEEEE--STTTS-BGCG..S-THHHHHHHTSEEEEE----HHHHH-B-SSTTSBS-HHHHHHHHHHHHH.HHHGGGGTEEEEEEEEEEETHH CS
  COesterase 100 eakkklPVlVwihGggfqtgsase..ydgsaLaaegnvivVtinYRlGvlGFlstgdeeapGNvGllDqvlALrWV.kenIasFGGdpervtlfGesAG 195
                 +++ ++ V+ ++hGg++ +gs  e  y+ +  a++ +  v +  YRl +         ++p   Gl+D  +A  ++   n      dp  + l+G+sAG
  KKY24370.1 139 KENDGRRVMLYVHGGAYFFGSTDEhrYQMQRHARKLKARVLAPRYRLAP---------QFPFPCGLQDCLAAYLYLlTMN------DPTDIILAGDSAG 222
                 4444558***************8888*********************86.........6677789999999855540444......9999999999999 PP

                 HHHHHHHHHS CS
  COesterase 196 aasvslllls 205
                 + +v   l++
  KKY24370.1 223 GGMVMSILVT 232
                 8888765554 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.6e-05     0.073      72     119 ..     208     260 ..     194     300 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.6e-05
  Hydrolase_4  72 ehpelplfllGhSmGGliallyl...lrypdkva.glilsaPalkikaklk.a 119
                   +  + ++l G S GG +++++l    ++ + +  g+il++P++++ ++++ +
   KKY24370.1 208 MNDPTDIILAGDSAGGGMVMSILvtlRDQGHPLPaGAILISPWVDLTHSFPsL 260
                  5555689***************9886333334445**********99886444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (994 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 6652.10
//
Query:       KKY24371.1  [L=307]
Description: hypothetical protein UCRPC4_g02481 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0068   15.4   8.6       0.03   13.3   8.6    2.0  1  TCO89     TORC1 subunit TCO89
  ------ inclusion threshold ------
       0.18   12.7   5.6        4.9    8.1   0.1    3.2  3  DUF4648   Domain of unknown function (DUF4648)


Domain annotation for each model (and alignments):
>> TCO89  TORC1 subunit TCO89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   8.6   3.4e-06      0.03     462     546 ..     108     208 ..      12     233 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.4e-06
       TCO89 462 dSRTQrKlllQRe....sSilDlnsqn.dsaeavfl..asnie..........vkreferisheYtnvrRfsnplaesLerisqsksiektqqkkinng 543
                  SRTQ++l lQR     sS     s+  d + + +   as +            kr +e  s +   ++Rf+np+ae+L+r+++ + i  +q  ki+n 
  KKY24371.1 108 PSRTQQRLELQRRetmrSSATPSESDPaDVPLSLRArsASRVRgrssqdnfkaAKRDYESASSQLEVIKRFRNPIAEALHRLQEMEVI-PDQDDKISNK 205
                 4999999999996222233333333323433333321133332111111222369***************************955554.5556666666 PP

       TCO89 544 lna 546
                 ++ 
  KKY24371.1 206 FKD 208
                 555 PP

>> DUF4648  Domain of unknown function (DUF4648)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.4   1.3e+04      32      52 ..      40      59 ..      27      61 .. 0.69
   2 ?    8.1   0.1   0.00055       4.9      57      79 ..      88     110 ..      70     111 .. 0.81
   3 ?    5.6   0.8    0.0034        30      19      56 ..     235     271 ..     230     284 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.4
     DUF4648 32 vrrlgrlqnarqpGqhpaktp 52
                ++ ++++ n+   G h ++ +
  KKY24371.1 40 ENGVSHFVNGSL-GAHGTPKT 59
                456788888888.88877654 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00055
     DUF4648  57 GisepkasklcgnrayGKsLipp 79 
                  + ++ +s l + ra+GK L+++
  KKY24371.1  88 QTQHRSSSGLLNRRANGKTLPSR 110
                 46789999************875 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0034
     DUF4648  19 rsdrldvltreeevrrlgrlqnarqpGqhpaktparpv 56 
                 + dr +++ +e +v + gr++  rq G h     +r  
  KKY24371.1 235 HEDRSEGREKEPRVASRGRVRFERQ-GSHDDIGLSRSH 271
                 789999999****************.*99766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2162.48
//
Query:       KKY24372.1  [L=329]
Description: putative sir2 family histone [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-31  109.5   0.0    3.4e-31  108.5   0.0    1.5  1  SIR2      Sir2 family


Domain annotation for each model (and alignments):
>> SIR2  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5   0.0   1.9e-35   3.4e-31       1     177 []      44     272 ..      44     272 .. 0.83

  Alignments for each domain:
  == domain 1  score: 108.5 bits;  conditional E-value: 1.9e-35
                 -GGGGGGGT---SSSTTSHHHHSCHHHHSSHHHHHHHHHHHHHHHHHHHHHHHCCTSS--HHHHHHHHHHHT........TCEEEEEES-SSSHHHHTT CS
        SIR2   1 GAGiStesGipdfRskeGlyaklakeelaspealfskkllveevfyniarellaeeaepnaaHkalkklekk........gkllrliTQNiDgLekkaG 91 
                 GAG+S++sG+p+fR++ Gl++ ++ ++la+p+a++ ++ lv++ fy+ +r++ + +a+pnaaH al++l kk        ++ + ++ QN+DgL ++aG
  KKY24372.1  44 GAGLSASSGLPTFRGAGGLWRSHDATSLATPHAFQADPGLVWQ-FYSYRRNMAK-HANPNAAHFALAELAKKlnhgcppgQEKFLCLSQNVDGLSQRAG 140
                 9******************************************.**99999887.8*************998444444434567899************ PP

                 -S...SEEETTEEEEEEEETTTSBEEECCGGHCHHHCCTT.................................B-TTTCC.BEEEEE--CTSB-S.HHH CS
        SIR2  92 sk...kvvelHGslakakcvkcekkldkeelqeeieaekvp................................ecekcgk.llkpdvvfFGealp.dkl 153
                  +    +  lHGsl+ +kc + +  + +++ +e+    +++                                +c+kc++ ll+p vv+F e+lp ++l
  KKY24372.1 141 HTeetGLRLLHGSLWDVKCFDRRCDFVRKNDFEDPICPSLAmpatnnglnpgtpsdisnplidlppvpysslpHCPKCHHsLLRPGVVWFTESLPtQTL 239
                 997777999**********9766665555555554444444568999*******************************86599************7776 PP

                 HHHHH..H.......HHH-SEEEEES--STSTT CS
        SIR2 154 kklie..k.......veeadlllviGtSlkVap 177
                  ++ +  +         ++dl+lviGtS  V+p
  KKY24372.1 240 GSISSwlDttlpdeySPHVDLMLVIGTSSVVYP 272
                 5554322211111114589************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2255.17
//
Query:       KKY24373.1  [L=117]
Description: hypothetical protein UCRPC4_g02483 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 774.54
//
Query:       KKY24374.1  [L=747]
Description: putative beta-glucosidase 6 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-17   63.8   0.5    3.6e-17   62.7   0.5    1.5  1  Cellulase  Cellulase (glycosyl hydrolase family 5)
  ------ inclusion threshold ------
       0.14   12.1   0.1       0.31   11.0   0.1    1.5  1  DUF3377    Domain of unknown function (DUF3377)
       0.15   12.1   3.3       0.38   10.8   3.3    1.6  1  SNARE      SNARE domain
        1.1   10.2   0.0        1.1   10.2   0.0    2.9  2  DUF4834    Domain of unknown function (DUF4834)
        2.1    8.5   5.1       0.92    9.6   0.2    2.3  2  ETRAMP     Malarial early transcribed membrane protein (ETRAM


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.5     1e-20   3.6e-17      17     252 ..     384     621 ..     367     648 .. 0.81

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 1e-20
                 TSCGGSHHHHHHHHHHHT-SEEEEEEE.CTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS...............TTTCSSSSTTTTHH CS
   Cellulase  17 wgnpyttkalidevkdagfntvRlpvs.wgelvenapdykvdenslerveevvkyakenglyvildiHse...............egwltkadgnssed 99 
                 w     t+++++e+++ag ++vR+p+  w   + +++ y v + +   +   +++a + gl+v ld+Hs                 gw++  dg+ + +
  KKY24374.1 384 W----VTEQTFSEIAAAGLDHVRIPYPyWAVTTYDGDPY-VPKIAWRYLLRGIEWARKYGLRVNLDLHSLpgsqngmnhsgrqgvIGWINGTDGSLNAQ 477
                 3....6799****************97464444457777.88889999999******************999999999998888878888888888888 PP

                 HHHHHHHHHHHHHHHHHTTTTTTEEEESSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTTSSEEEEECHHHHTBHHHHHCTSGSSSSTTEEEEE CS
   Cellulase 100 taeeffkklwtqiAerykkndevvifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgpnrliivegnswsgnldgavlndPndsqdnliysv 198
                 ++ +  ++l + +A++   ++ v i+ l+NEP   + g        ++v a++++aik+IR+ g + +ii +     ++l++  ++  +d++++li++ 
  KKY24374.1 478 RSLDIHDQLSQFFAQKR-YENVVTIYGLCNEPKMLSLG--F-----TDVIAWNKKAIKIIRDNGMDKYIIFGD--GFESLTS-WKDRMTDVDSKLIMDT 565
                 88888888888888775.577788**********8877..5.....89999*********************9..7777777.555336889******* PP

                 EEETTTHHHTGCGSHSCTHHHHHHHHHHHHHHHH..HHTTS.EEEEEEEESSTTSSH CS
   Cellulase 199 HfYgpsdfaqtefgkdltdktnlaqrledaakyl..vekgi.pviigEfGgsnadgd 252
                 H+Y   + +q +f   ++++    ++++++ ++   ++ g  p++ gE+   ++d  
  KKY24374.1 566 HQYMIFNTGQLAF-THQNKVELACDTWSEMLTTSldTSSGWgPILNGEWSQADTDCA 621
                 ****999999999.6778888888999999998834456889*******98777654 PP

>> DUF3377  Domain of unknown function (DUF3377)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   8.7e-05      0.31      15      56 ..     195     236 ..     188     240 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.7e-05
     DUF3377  15 vvvkiddeesgtvnaiaVvvPlvLllciLvliyailqfrrkg 56 
                 v+ + d+ + +   +i V+v +vLll+iL+ + +++  ++ g
  KKY24374.1 195 VTYRKDNGKRKKRCLILVIVIIVLLLIILIPVGVLVIGKNNG 236
                 555556666677889*****************9999877766 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.3   0.00011      0.38      32      52 ..     201     221 ..     194     222 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
                 CTXXXXXXXXXXXXXXXXXXX CS
       SNARE  32 ksnRklkciillilviillvv 52 
                    Rk+ c+il+i++i+ll++
  KKY24374.1 201 NGKRKKRCLILVIVIIVLLLI 221
                 456888888888888888877 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.9   8.2         5   1.8e+04      48      66 ..     117     135 ..      38     167 .. 0.60
   2 ?   10.2   0.0   0.00031       1.1       8      52 ..     209     253 ..     207     277 .. 0.58

  Alignments for each domain:
  == domain 1  score: -5.9 bits;  conditional E-value: 5
     DUF4834  48 nstnsnqqksqsrsetkee 66 
                 ++++ +++ +++ +e+ +e
  KKY24374.1 117 QNQKADSKVKEKVKEKVRE 135
                 1111111111122222222 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00031
     DUF4834   8 lifiiailviglsilsvilrtvfglgsrkkssksaqkqfgnstns 52 
                 li++i+i+v+ l+il  +   v+g+ + ++ss s ++++++s +s
  KKY24374.1 209 LILVIVIIVLLLIILIPVGVLVIGKNNGSSSSTSTTSSSSSSSSS 253
                 466777777777777777777766544444443333333333222 PP

>> ETRAMP  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.9      0.34   1.2e+03      17      50 ..     104     137 ..     101     141 .. 0.69
   2 ?    9.6   0.2   0.00026      0.92      50      74 ..     202     227 ..     188     236 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.34
      ETRAMP  17 nlltpeslcdevnkkkekakkaikkiddkiekkk 50 
                 ++l+  +l++ ++++++ ++k  +k+++k+++k+
  KKY24374.1 104 HMLSLDALAKLNAQNQKADSKVKEKVKEKVREKE 137
                 5666666777777777777777777777777774 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00026
      ETRAMP  50 kkkkKliiistiatalallvasa.lG 74 
                  k+kK ++i +i+++++ll+ ++ +G
  KKY24374.1 202 GKRKKRCLILVIVIIVLLLIILIpVG 227
                 478888******99999998654356 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1485  (0.0828267); expected 358.6 (0.02)
Passed bias filter:                      796  (0.0443973); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.87u 0.36s 00:00:01.23 Elapsed: 00:00:00.51
# Mc/sec: 4380.18
//
Query:       KKY24375.1  [L=268]
Description: hypothetical protein UCRPC4_g02485 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1897.44
//
Query:       KKY24376.1  [L=413]
Description: hypothetical protein UCRPC4_g02486 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   12.4   0.0          5    7.8   0.0    2.8  2  Ank_4     Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0   0.00028         5      14      53 ..     224     258 ..     213     258 .. 0.87
   2 ?    1.1   0.0     0.035   6.3e+02       8      22 ..     313     327 ..     306     354 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00028
       Ank_4  14 lelvrlLlekgadinaqdnrsGetalhiAakrgnveilkl 53 
                 +++++++l++g  + ++     e al  A  rg++e+l++
  KKY24376.1 224 VPVLDWWLNSGLPLLYT-----ERALEAASARGHIEVLEW 258
                 7899********99998.....77**************99 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.035
       Ank_4   8 aaisgrlelvrlLle 22 
                 a ++g++++++ +++
  KKY24376.1 313 ASAHGHVDALQKWYD 327
                 555888888877774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3151.18
//
Query:       KKY24377.1  [L=725]
Description: putative glutaminase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-76  253.7   1.9    1.1e-75  253.0   1.9    1.4  1  DUF4965   Domain of unknown function (DUF4965)
    1.1e-75  254.3   8.8      2e-43  148.8   4.0    2.2  2  DUF5127   Domain of unknown function (DUF5127)
    1.9e-49  168.3   0.3    1.9e-49  168.3   0.3    2.2  3  DUF1793   Domain of unknown function (DUF1793)
    2.9e-06   26.7   1.4    1.3e-05   24.6   1.4    2.1  1  DUF4964   Domain of unknown function (DUF4964)
  ------ inclusion threshold ------
        3.7    6.5   8.9        1.3    8.0   4.9    2.0  2  FAM199X   Protein family FAM199X


Domain annotation for each model (and alignments):
>> DUF4965  Domain of unknown function (DUF4965)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.0   1.9   3.2e-79   1.1e-75       2     174 .]     396     566 ..     395     566 .. 0.99

  Alignments for each domain:
  == domain 1  score: 253.0 bits;  conditional E-value: 3.2e-79
     DUF4965   2 ggekYadllalsvRqafaalelvskdetsevllflKeissngnvntvDviypalPlflylnpellkllLeplleyqesgkypkkfaahDlGtsYPnatg 100
                 gg++Y +++al+ Rqaf+a++l+   ++s+++lflKeiss+gnvntvDvi+p++ ++ly np+llk+lL+pl+e+qesg+yp+++a+hDlG+sYPnatg
  KKY24377.1 396 GGSDYYAITALASRQAFGATQLC--GTSSKPYLFLKEISSDGNVNTVDVIFPMHLILLYSNPTLLKYLLDPLYENQESGQYPNTYAMHDLGSSYPNATG 492
                 89*********************..567*********************************************************************** PP

     DUF4965 101 qndgedeqmpveesGnmlimalayaqasgdasllekyydllkqWadYLvengldpanqlstddfagalanqtnL 174
                 +  g+de mpvee+Gnm+im+layaq+sgd+++l+++yd l+qW+ YLv+++l+p++q+stddfagalanqtnL
  KKY24377.1 493 HAAGNDEMMPVEECGNMIIMTLAYAQRSGDTAYLNQHYDKLQQWTAYLVNDSLIPSSQISTDDFAGALANQTNL 566
                 *************************************************************************8 PP

>> DUF5127  Domain of unknown function (DUF5127)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.1   0.2   1.5e-34   5.4e-31       2      96 ..     105     200 ..     104     216 .. 0.93
   2 !  148.8   4.0   5.7e-47     2e-43      61     227 .]     220     391 ..     213     391 .. 0.91

  Alignments for each domain:
  == domain 1  score: 108.1 bits;  conditional E-value: 1.5e-34
     DUF5127   2 qtiftftaggkveltvtFlSPvlpddldrqSlpfsYltvevkstdgkshsVqvYsdisaewasgdesqevewstt.tgglayhkvgrqnqevlsek 96 
                  + f++++gg v++tvtF SP++p+dl+rqSl fsYl+v+v+s+dg +h+Vq+Ysdisaew+sgd++++vew+ + tg++++ +v+r+  ++l ++
  KKY24377.1 105 TSKFVLDVGGSVQMTVTFDSPIFPNDLKRQSLVFSYLNVDVQSLDGGNHDVQLYSDISAEWVSGDRTATVEWDFGvTGSTTSRRVTRKRDTPLHRR 200
                 689***********************************************************************966899999**99999998876 PP

  == domain 2  score: 148.8 bits;  conditional E-value: 5.7e-47
     DUF5127  61 ewasgdesqevewsttt..gglayhkvgrqnqevlsekndradwGyaylatkakss.ltyqsgedtevrkqFvkngklantkdtnfraisddwpvfala 156
                 + as+++s ++ +st    gg+ayhkv+rq+q  +se nd++++Gy+y+at+ + + ltyqsged++vr+ F++ g l+ t+dt+frai+d+wpvf++a
  KKY24377.1 220 TSASSTSSVSTPSST-YpaGGIAYHKVYRQTQLDFSEINDQTEFGYWYWATD-NVAnLTYQSGEDSAVREGFATYGFLNDTQDTDFRAIDDSWPVFGFA 316
                 555655555555555.3448********************************.5566*********************99******************* PP

     DUF5127 157 hdlgsvssesksvvfaiGyvrdpaiqylg....qnlrpyWrskyssiedalsaflkdyaaalkrsealDkkirad 227
                 +dlgsv+++++s++f+iG+++++ iq+ +     + +++W+s++s+  +als+f++dy++a+++ +++D+k+++d
  KKY24377.1 317 IDLGSVDDQTVSTLFSIGLTQEYPIQFDSaqgnVSEPALWTSYFSDELSALSFFHSDYSHASSAENSFDSKLQTD 391
                 ******8878******************88888999************************************987 PP

>> DUF1793  Domain of unknown function (DUF1793)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.2   7.8e+03     133     159 ..     458     484 ..     448     488 .. 0.71
   2 ?   -4.2   0.2         5   1.8e+04      44      65 ..     513     534 ..     508     545 .. 0.58
   3 !  168.3   0.3   5.4e-53   1.9e-49       2     147 ..     573     724 ..     572     725 .] 0.93

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.2
     DUF1793 133 tdrpftdlYdtegtgglpgfrarpvvG 159
                  +  +  lY+++++g++p+++a   +G
  KKY24377.1 458 LKYLLDPLYENQESGQYPNTYAMHDLG 484
                 556677799999999999977655555 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 5
     DUF1793  44 klaYdkedswsllYnlyaDkll 65 
                 +laY +++  +   n   Dkl 
  KKY24377.1 513 TLAYAQRSGDTAYLNQHYDKLQ 534
                 5555555555555555555543 PP

  == domain 3  score: 168.3 bits;  conditional E-value: 5.4e-53
     DUF1793   2 GikAmseiaellge.eedakkysaiaeeyikkweelaidg....thlklaYdkedswsllYnlyaDkllgl..nlvpqsvyemqsafYktvaqkyGlpl 93 
                 Gi Ams i++l+g+ +++a++ys++a++y+++we+l+i++    +h++l+Y++++s+sllYnl+a  ll+l    +pqs y+mqs+fY+tv q+yG+pl
  KKY24377.1 573 GIGAMSSISNLTGNhSAEAQNYSSTAQSYFDQWEDLGIAKnaipPHTTLNYGNDSSYSLLYNLLAAPLLSLssPQIPQSLYTMQSSFYPTVFQTYGVPL 671
                 9***********96157889******************4446978************************984467************************ PP

     DUF1793  94 DsrhtytksdWelfaaavaskktreelissvakwvnetktdrpftdlYdtegtg 147
                 D+rhtytk dWelf+aa+a+++tr++++ +v+kw+net t+ ++tdlYd+e tg
  KKY24377.1 672 DTRHTYTKLDWELFCAAIAEEDTRQKFFGTVVKWINETVTSGALTDLYDVE-TG 724
                 *************************************************94.65 PP

>> DUF4964  Domain of unknown function (DUF4964)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   1.4   3.7e-09   1.3e-05      22      78 ..      24      87 ..       6      92 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3.7e-09
     DUF4964 22 seLRaPayPLvtidpylsiWsf.tde......LndesvkhwtgkdlpllgvlrVDGkvYrfmGk 78
                s  R Pa+PL +  pyls W    ++      L     ++w+g+ +   g++rVDG++Y +mG+
  KKY24377.1 24 SPARPPAIPLAVRSPYLSTWLGvGNDggdggiLPGAWPTFWAGAVTGWTGLIRVDGTSYVWMGE 87
                5569****************6413442222335555669************************7 PP

>> FAM199X  Protein family FAM199X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.9   0.00037       1.3     190     232 ..     193     236 ..     184     248 .. 0.78
   2 ?   -0.8   0.1      0.17   6.2e+02     240     267 ..     362     389 ..     346     401 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00037
     FAM199X 190 rqrasstreswkrss.yssastsgvsaasssnasmvssasssta 232
                 r  +   re+ +r s  +s+st g s++s+s++s vs+ ss+  
  KKY24377.1 193 RDTPLHRREAVRRQSnSNSTSTVGPSGTSASSTSSVSTPSSTYP 236
                 44455678888876515678999***************999865 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.17
     FAM199X 240 nsaanisrahsdsnlssaaerirdskkr 267
                 +  + +s  hsd + +s+ae   dsk +
  KKY24377.1 362 DELSALSFFHSDYSHASSAENSFDSKLQ 389
                 5556789999999999999999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 4777.69
//
Query:       KKY24378.1  [L=268]
Description: hypothetical protein UCRPC4_g02488 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-82  275.6   0.2    3.7e-82  275.3   0.2    1.1  1  DUF3431   Protein of unknown function (DUF3431)


Domain annotation for each model (and alignments):
>> DUF3431  Protein of unknown function (DUF3431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.3   0.2     2e-86   3.7e-82       1     204 [.      57     267 ..      57     268 .] 0.95

  Alignments for each domain:
  == domain 1  score: 275.3 bits;  conditional E-value: 2e-86
     DUF3431   1 lVvaklkeedtsWveeelpdlqtaiYvvddpsaeltvpankGreamaYltyiidnYdsLpdvvvFvhahr....aawhndaldydnaallrrlrleavq 95 
                 +V+ak+k+edt+Wv  +lpd+q+aiY +d+p+a+l+vp+nkGreamaYlty+id+Y++Lp++++F+h+h+    aawh+da  ydn++ l+ l++++vq
  KKY24378.1  57 VVMAKTKSEDTDWVGIHLPDWQHAIYHMDEPKAKLHVPKNKGREAMAYLTYLIDHYNNLPSTIAFIHSHEkgfpAAWHTDAYGYDNVRSLNMLKIDHVQ 155
                 69********************************************************************99999************************ PP

     DUF3431  96 eeGYvnlrckwepgCpaelkple.kee.eekkeeealaeafaelf.eeeevpevvaapcCaqFavsrerirkrpreeYvrlrqwlletelddelsGrvl 191
                 ++GY++lrc  epgCp+e++p++  ++   +++e+ + +a++++f +++++p+v+aa+cC+qFavs++++++rpr++Y+r+r+wll+t++dd++sGrv+
  KKY24378.1 156 QTGYTSLRCIEEPGCPNEIQPFRaGKDeGLRHSETTMIDAWTQMFgKHSQIPDVIAATCCSQFAVSKAQVLQRPRDDYIRFRKWLLDTKVDDATSGRVM 254
                 **********************95333255777779*********87789************************************************* PP

     DUF3431 192 eylWhilFgkeav 204
                 eylWhi Fgke+v
  KKY24378.1 255 EYLWHIFFGKEPV 267
                 *********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.50
# Mc/sec: 1615.07
//
Query:       KKY24379.1  [L=311]
Description: putative esterase lipase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-32  111.1   0.0    8.3e-32  110.8   0.0    1.1  1  Abhydrolase_3  alpha/beta hydrolase fold
    3.7e-08   32.6   0.0    4.4e-08   32.4   0.0    1.1  1  Say1_Mug180    Steryl acetyl hydrolase
  ------ inclusion threshold ------
      0.085   12.1   0.0       0.13   11.5   0.0    1.2  1  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8   0.0   1.4e-35   8.3e-32       2     210 ..      73     286 ..      72     287 .. 0.89

  Alignments for each domain:
  == domain 1  score: 110.8 bits;  conditional E-value: 1.4e-35
                    EEE--STTTS--TTTTHHHHHHHHHHH.TSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT CS
  Abhydrolase_3   2 vyfHGGGfvlgsldthdalcrelakel.gavvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardeg 96 
                     yf GG fv+  ++ h+++c+ela+el ++++  v Y lAP++++ + +    + +  l ++   +  +++++++aGdS GGn+a+ + l  +de 
     KKY24379.1  73 YYFAGGSFVMPASKEHWTICAELARELpEYRIHIVGYPLAPKNRAAQSLPILRKLAVELCKK---ADKQNRNVTFAGDSSGGNIAMSLGLFTADEA 165
                    69************************94599*************999999888888888888...467899****************998888874 PP

                    ---.......EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSS.GGGGGSTTTSGGGC..S-SST--.-EEEEEETT-TTHH CS
  Abhydrolase_3  97 epk.......vagqvliyPvtdlertesesikkaeeladgplltraaldlfwrlylp.eadrddplasplla..edlsglp.ptlvvvaefDplrd 181
                     +k       ++ ++li+P++dl r+++++i+  ++++++p++t ++++++++++++ + ++ddp++sp+la  ++l+ l  ++  +++++D+l  
     KKY24379.1 166 -IKegdrrtqLKNILLISPAVDL-RNRNPAIT--TTNRRDPVMTEKHIKWVADQWVGdGITADDPAVSPILAnlTSLRTLGiKVHGIIGTYDVLAP 257
                    .333577888*************.99999994..667888****************77**************332466655578999********* PP

                    HHHHHHHHHHHTT--EEEEEETTEETTGG CS
  Abhydrolase_3 182 egeayaerlraagvevelieyegmvHgfa 210
                    +++a+ +rl++ gv  e+ e+e+++H+f 
     KKY24379.1 258 DTIAFRQRLEEFGVGGEWLEWEKQMHCFP 286
                    ***************************95 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   7.3e-12   4.4e-08      94     241 ..      39     191 ..       4     230 .. 0.80

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 7.3e-12
  Say1_Mug180  94 dkkllnqdkikskfvwlrkv....petfdPkvDpvllylHGGgfalklipvtlvfLsnlrklfpdmailvsDYtvtaakdqskkYplqvleslavydy 187
                  +k  +++++i   +v+  ++    + ++ Pk D  l y+ GG f+++  +    +   l + +p+  i ++ Y++  ++  ++  p  +l  lav   
   KKY24379.1  39 EKVEVQEHQICDVYVYEMTAklpaGIKYRPKHD--LYYFAGGSFVMPASKEHWTICAELARELPEYRIHIVGYPLAPKNRAAQSLP--ILRKLAVELC 132
                  455556666666677765443422456778888..99**************************************99776666666..5677777666 PP

  Say1_Mug180 188 lvkskgfknvvvlGdSaGGnlvLslllk.....lsklnkvvlPkkaiaiSPWlnltild 241
                      k  +nv+  GdS+GGn+ +sl l      +++ ++ +  k++ +iSP ++l  ++
   KKY24379.1 133 KKADKQNRNVTFAGDSSGGNIAMSLGLFtadeaIKEGDRRTQLKNILLISPAVDLRNRN 191
                  6667999*****************9776688989999****************998655 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.2e-05      0.13      69     121 ..     132     195 ..     125     235 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.2e-05
  Hydrolase_4  69 vk.eehpelplfllGhSmGGliallyl..........lrypd...kvaglilsaPalkikaklkapp 121
                   k +++++++++  G S GG ia++++              d   +++ + l++Pa++++++ +a  
   KKY24379.1 132 CKkADKQNRNVTFAGDSSGGNIAMSLGlftadeaikeG---DrrtQLKNILLISPAVDLRNRNPAIT 195
                  45367778899***************977665554433...1555999***********98865322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 1942.73
//
Query:       KKY24380.1  [L=238]
Description: putative ubiquinone biosynthesis methyltransferase coq5 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-73  246.8   0.0    2.3e-73  246.4   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    4.8e-17   62.4   0.0    1.1e-16   61.3   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    3.1e-15   56.6   0.0    7.2e-15   55.4   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    1.4e-12   47.6   0.0    1.7e-12   47.4   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
    7.6e-11   42.6   0.0    1.2e-10   42.0   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
      1e-07   31.9   0.0    1.4e-07   31.5   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
       0.14   12.0   0.0       0.87    9.4   0.0    2.1  3  Methyltransf_8   Hypothetical methyltransferase


Domain annotation for each model (and alignments):
>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.4   0.0   9.1e-77   2.3e-73      23     233 .]       1     236 [.       1     236 [. 0.92

  Alignments for each domain:
  == domain 1  score: 246.4 bits;  conditional E-value: 9.1e-77
                      HHHHHHTTTHHHHHH.HHHHH--S--TT.............EEEEES-TT-HHHHHHHHHHHHHH.....EEEEEES-HHHHHHHHHHHHHHTS CS
  Ubie_methyltran  23 mndvlslgihrlWkk.fveklvavkrga.............kvlDvagGtgDlafklsdsvgekg.....kvvvlDinenmLkvgekklkeegk 97 
                      mnd++slgihr+Wk+ fv  l+ + + +             ++lD+agGtgD+af+++d++ +       +v++ Din++mL +g+k++ e+ +
       KKY24380.1   1 MNDLMSLGIHRVWKDhFVRSLNPGSPVSirsqpsssenegwSILDIAGGTGDIAFRMLDHATKINgdhktRVTISDINPDMLAEGRKRALETPY 94 
                      9**************77777665554447777889999999*******************98865688889********************988 PP

                      S...TEEEEE--TTT-T.TS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE----SHHHHHHHHHHHH.HHHHHHHHHHS-HHH CS
  Ubie_methyltran  98 i...nieflqanaeeLp.feddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefskvelpllsqayelyskevlPvlGkllakdlds 187
                          +++fl anae L    d+s D++tv+fG+rn+tDk++aL+ea+rvlkpGG + +lefskv++p+++  y+ +s++ +P++G+++a d ds
       KKY24380.1  95 AntsRLDFLEANAESLTdIADNSIDLYTVAFGIRNFTDKPRALREAFRVLKPGGVFACLEFSKVQNPVFDAVYKRWSFSAIPMIGQIVAGDRDS 188
                      77779***********72568************************************************************************* PP

                      HHHHHHHHHHS--HHHHHHHHHHTTEEEEE..EEEEGGGTEEEEEEEE CS
  Ubie_methyltran 188 yryLvesirafPdqetlkeliedaGfksve..yesltgGvvaihigvk 233
                      y+yLvesi++fP qe+ +e+i++aGf + +  +e+lt G++aih gvk
       KKY24380.1 189 YQYLVESIERFPSQEEWAEMIREAGFVTPDpaWENLTEGIAAIHKGVK 236
                      **************************9864339*************98 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   4.2e-20   1.1e-16       1      97 []      43     148 ..      43     148 .. 0.89

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 4.2e-20
                      EEEET-TTSHHHHHHHCTS....T..SSEEEEEESSHHHHHHHHHHHHHTTT....TEEEEESBCCGBS.SSTTTEEEEEEESTGGGSSHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl....g..kakvtgvDiseemleaareraeeegl....nvefvqgdaedlp.fedgsfDlvvssgalhhlsdedle 83 
                      +Ld++ GtG+++++++++     g  k +vt  Di+++ml++ r+ra e  +    +++f++++ae+l   +d+s+Dl ++++++  ++  d +
       KKY24380.1  43 ILDIAGGTGDIAFRMLDHAtkinGdhKTRVTISDINPDMLAEGRKRALETPYantsRLDFLEANAESLTdIADNSIDLYTVAFGIRNFT--DKP 134
                      8**************999776663569********************984335668***********9736**********99999988..678 PP

                      HHHHHHHHHEEEEE CS
  Methyltransf_25  84 kalkeiarvLkpgG 97 
                      +al+e++rvLkpgG
       KKY24380.1 135 RALREAFRVLKPGG 148
                      9************9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   2.8e-18   7.2e-15       1      96 []      44     152 ..      44     152 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 2.8e-18
                      EEET-TTSHHHHHHHHTT........SEEEEEES-HHHHHHHHHHCCHHT-....EEEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg........arvvgvDlskemlklakekaseegl....kvefvvadaekl.pfednsfDlvvssevlhhvedpekal 81 
                      Ld++ GtG +a  + +++        +rv+  D+++ ml+  +++a e +     +++f++a+ae+l  ++dns+Dl ++ + + ++ d  +al
       KKY24380.1  44 LDIAGGTGDIAFRMLDHAtkingdhkTRVTISDINPDMLAEGRKRALETPYantsRLDFLEANAESLtDIADNSIDLYTVAFGIRNFTDKPRAL 137
                      79999999999998844444556777*************999888888877899************989************************* PP

                      HHHHHHEEEEEEEEE CS
  Methyltransf_11  82 keiaRvLkpgGllvi 96 
                      +e+ RvLkpgG++++
       KKY24380.1 138 REAFRVLKPGGVFAC 152
                      ************975 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   6.5e-16   1.7e-12       3     117 ..      39     159 ..      37     213 .. 0.75

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 6.5e-16
  Methyltransf_31   3 kglrvlDlGCGtGeltfelae...elgpkae..vvGiDiseeaielArenaqklgld...nveFeqgdieeleklledekfDlilsnevlnala 88 
                      +g ++lD++ GtG+++f++ +   +++ + +  v+  Di+++++   r++a +  +    ++ F ++++e+l   ++d+++Dl +    +  ++
       KKY24380.1  39 EGWSILDIAGGTGDIAFRMLDhatKINGDHKtrVTISDINPDMLAEGRKRALETPYAntsRLDFLEANAESLTD-IADNSIDLYTVAFGIRNFT 131
                      67789****************9886666444569999******************99777789********775.89******98887889*** PP

  Methyltransf_31  89 dpdkileeiervlkpggilliedpr.llae 117
                      d++ +l+e++rvlkpgg++++ +++ +  +
       KKY24380.1 132 DKPRALREAFRVLKPGGVFACLEFSkV--Q 159
                      ***********************9942..2 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   4.7e-14   1.2e-10       1      99 []      44     150 ..      44     150 .. 0.97

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 4.7e-14
  Methyltransf_12   1 LeiGcGtGsllrallekl......pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg..ssfDlvvasnvlhhlkdirevl 86 
                      L+i +GtG++++++l++       + +++t +Di+p++++  +++  +    n++++++ + ++++l +   +s Dl ++++ + ++ d+ ++l
       KKY24380.1  44 LDIAGGTGDIAFRMLDHAtkingdHKTRVTISDINPDMLAEGRKRALETPYANTSRLDFLEANAESLTDIadNSIDLYTVAFGIRNFTDKPRAL 137
                      8**************************************************************99988889*********************** PP

  Methyltransf_12  87 dnirklLkpgGrl 99 
                      +++ ++LkpgG++
       KKY24380.1 138 REAFRVLKPGGVF 150
                      ***********86 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   5.5e-11   1.4e-07      21     160 ..      38     214 ..      10     216 .. 0.75

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 5.5e-11
  Methyltransf_23  21 raggrvLdiGcGtG.illevl....rengf...svtgvDlspeaveiae.........kakkaqkdqfdeqeaae.pqgkfdlIvlrevlehvp 96 
                      ++g ++Ldi+ GtG i  + l    + ng     vt  D++p + ++ +         +++   +  +++++ ++  ++++dl +  +++ ++ 
       KKY24380.1  38 NEGWSILDIAGGTGdIAFRMLdhatKINGDhktRVTISDINPDMLAEGRkraletpyaNTSRLDFLEANAESLTDiADNSIDLYTVAFGIRNFT 131
                      445599********76555554334445533449********9999888999998888666666666666666655677*************** PP

  Methyltransf_23  97 dppellrqiatllkpgGylllseplasl...................kedrllld..wlylvpagrhisffsarslkelleeaGl 160
                      d p++lr +++ lkpgG++ ++e+ + +                    +  + +   ++ylv+     +f s ++++e+ +eaG+
       KKY24380.1 132 DKPRALREAFRVLKPGGVFACLEFSKVQnpvfdavykrwsfsaipmiGQIVAGDRdsYQYLVES--IERFPSQEEWAEMIREAGF 214
                      ***********************97655888888866666666655533333222225555544..66999999*********99 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.41   1.1e+03      56      92 ..      23      59 ..       9      77 .. 0.76
   2 ?    9.4   0.0   0.00034      0.87     118     159 ..     113     155 ..     106     168 .. 0.81
   3 ?   -3.1   0.0       2.3     6e+03     157     179 ..     193     215 ..     189     219 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.41
                    SS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S CS
  Methyltransf_8 56 PenPldviirklkkkkdnlvvadlGcGeakiaeavre 92
                    P  P+ +  +   + ++  ++ d+  G   ia+++ +
      KKY24380.1 23 PGSPVSIRSQPSSSENEGWSILDIAGGTGDIAFRMLD 59
                    5667766666667788888999**9999999987654 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00034
                     --TT-EEEEEEES---S.S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Methyltransf_8 118 ledesvdvavfclslmg.tnladflkeanrvlkvGGllkvaev 159
                     ++d+s+d+  + + +   t+    l+ea rvlk+GG++   e 
      KKY24380.1 113 IADNSIDLYTVAFGIRNfTDKPRALREAFRVLKPGGVFACLEF 155
                     678888887777776533788889************9987775 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.3
                     EEEGGG-S-HHHHHHHHHCTTEE CS
  Methyltransf_8 157 aevksrfesvklfaraltklGfe 179
                      e   rf+s + +a+ + + Gf 
      KKY24380.1 193 VESIERFPSQEEWAEMIREAGFV 215
                     56667999999999999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1704.16
//
Query:       KKY24381.1  [L=394]
Description: putative 2-oxoisovalerate dehydrogenase alpha subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-88  295.3   0.0    4.7e-88  295.0   0.0    1.1  1  E1_dh           Dehydrogenase E1 component
  ------ inclusion threshold ------
      0.015   14.1   0.1      0.051   12.4   0.0    1.8  2  XFP_N           XFP N-terminal domain
      0.051   12.8   0.0      0.093   11.9   0.0    1.3  1  DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase


Domain annotation for each model (and alignments):
>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.0   0.0   7.9e-92   4.7e-88       1     298 [.      42     347 ..      42     349 .. 0.96

  Alignments for each domain:
  == domain 1  score: 295.0 bits;  conditional E-value: 7.9e-92
                 HHHHHHHHHHHHHHHHHHTTSS-S-----TT-HHHHHHHHHTS-TTSEEEESS--HHHHHHTT--HHHHHHHHTT-TTTSSGTT-..-E..BTT..BEE CS
       E1_dh   1 eklvllrrvedaldalykrkkrigfyhlsagqealkvgiaaalekeDliiteYReagvllarglsleeilaeltgkvkgkggsrh.elmyaekesrilg 98 
                 +k++l + ++d ++ +++r++ri+fy+ sag+e ++vg+a al +eD+++++YRe gv+ +rg +l+ ++++l  ++ + +++r  +++y++   ++ +
  KKY24381.1  42 YKTMLQVSIMDVIMFEAQRQGRISFYMVSAGEEGIAVGSASALIPEDVVFSQYREPGVFAYRGFTLKDFMSQLFANKYDTSKGRNpPVHYGSSRLNMHT 140
                 689999********************************************************************************************* PP

                 E-SSTTTHHHHHHHHHHHHHHHT......S---EEEEEEGGGTT-HHHHHHHHHHHHTT--EEEEEEEESEETTEEHHHH-S---GGG..TTTTS-EEE CS
       E1_dh  99 gngivgaqvplvaGialaakieg......kkevailliGDgAanqGdvyealnlaalwklpvifvveNNkygisTeaekasaskeladrargvgipglr 191
                 +++++++q p++aG+a+a k++g       k+v+++++G+gAa++Gd+++aln+a++ ++pvi++++NN+++isT++ ++++ + +a r++g+gi  +r
  KKY24381.1 141 ISSTLATQIPHAAGAAYAVKMRGlqdptlPKRVVACYFGEGAASEGDFHAALNIASTRHCPVIYICRNNGFAISTPTLEQYSGDGIASRGVGYGIDTIR 239
                 ********************877333333589******************************************************************* PP

                 EETTSHHHHHHHHHHHHHHHHT.TT--EEEEEEE--SS-SSTTSHSHSSSHHHHHHHHHHHH-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHH CS
       E1_dh 192 VdgnDplavyeAvkfAaerare.gkgpllielvtYRyggHsesDdpstyrtreeveevrkkkdpiqrlkelLvkkgvvseeelkeiekevrkeveeavk 289
                 VdgnD++av++A+  A+e a e g +p+lie+++YR+ +Hs+sDd+ +yr++ eve+++  ++pi+rl++ L  +g+++++ ++e ++++rkev  ++ 
  KKY24381.1 240 VDGNDIFAVRQATLKAREMALEdGGKPILIEAMSYRVSHHSTSDDSFAYRAKVEVEQWKRRDNPITRLRKWLEGQGLWNDQMEQEERSKLRKEVLKEFS 338
                 *******************9763789************************************************************************* PP

                 HHHHS---- CS
       E1_dh 290 kaeskkele 298
                  ae++k+++
  KKY24381.1 339 AAENEKQPP 347
                 *****9985 PP

>> XFP_N  XFP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.5e-06     0.051     157     253 ..     170     261 ..     147     278 .. 0.88
   2 ?   -1.1   0.1      0.11   6.6e+02     309     346 ..     339     374 ..     295     379 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.5e-06
       XFP_N 157 PdlivacvvGdGeaetGPlatswhsnkflnPaedGavlPilelnGykisnptilarisdeelkklfeGlGyepafvededteslhkllaevldkave 253
                 P+ +vac  G+G a  G     +h+   +  ++   v+ i   nG+ is pt+  + s + + +   G+G ++  v+++d  +++++  +  ++a+e
  KKY24381.1 170 PKRVVACYFGEGAASEGD----FHAALNIASTRHCPVIYICRNNGFAISTPTL-EQYSGDGIASRGVGYGIDTIRVDGNDIFAVRQATLKAREMALE 261
                 889***********9996....677778999********************96.6789999***99999999999*999999998887776666665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.11
       XFP_N 309 arentaklellkewlksykpeelfdedgslkeelkela 346
                 a+en+++ +l+  w + y  eel de+ + ++el++++
  KKY24381.1 339 AAENEKQPPLVSMWTDMY--EELTDEAKTQIKELRDII 374
                 556677777777888877..688888888888888875 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.6e-05     0.093     114     178 ..     146     216 ..     136     230 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.6e-05
  DXP_synthase_N 114 stsisaalGlavardlkge......kkkvvaviGDgaltgGmafealnnigelkkkllvilNdNemsiskn 178
                     +t i  a G a a +++g       k+ v +  G+ga + G  + aln +++ +  ++ i  +N  +is++
      KKY24381.1 146 ATQIPHAAGAAYAVKMRGLqdptlpKRVVACYFGEGAASEGDFHAALNIASTRHCPVIYICRNNGFAISTP 216
                     588999*******99999524444335555679********************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      702  (0.0391544); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 2784.16
//
Query:       KKY24382.1  [L=578]
Description: putative gpi transamidase component gpi16 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.3e-222  739.4   0.0     3e-222  739.0   0.0    1.1  1  Gpi16     Gpi16 subunit, GPI transamidase component


Domain annotation for each model (and alignments):
>> Gpi16  Gpi16 subunit, GPI transamidase component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  739.0   0.0  1.7e-226    3e-222       4     555 ..      12     558 ..       9     562 .. 0.96

  Alignments for each domain:
  == domain 1  score: 739.0 bits;  conditional E-value: 1.7e-226
       Gpi16   4 llllaasveaaeeysEeLlLrpLpdskllasfeFesetslaefeaqhfrlfPrslgqilqkanvrelhlrftqGrWdaeswgarplnglkeggtGvelw 102
                 l++l+  + a ++y+E+L+L pLp ++llasf+F+s+++l++f++++fr+fPrslgqil+++n++elhlrf++GrWd e wg+rp+ng+keggtGvelw
  KKY24382.1  12 LASLILCAPALSDYHERLTLYPLPLGSLLASFDFRSNETLSAFQQENFRYFPRSLGQILKHSNTKELHLRFSTGRWDPEVWGERPWNGVKEGGTGVELW 110
                 556677788999*************************************************************************************** PP

       Gpi16 103 avleaetdeeadakwlkLtnaLsGlfCaslnfidstrttrPalsfqpegdhses.eklkllygslPrevvCtENLtpflkLLPckgkaGissLLdghkl 200
                 a++ea+t+++a++kw++Lt+ LsGlfCaslnf+dstrttrP++sf  +gdh+++   l+ll+g+lP evvCtENLtpflkLLPckgkaGissLLdghk+
  KKY24382.1 111 AWIEAPTEDQAFEKWTSLTQLLSGLFCASLNFVDSTRTTRPVVSFGAKGDHNQAdGGLHLLHGVLPGEVVCTENLTPFLKLLPCKGKAGISSLLDGHKV 209
                 **************************************************9998789****************************************** PP

       Gpi16 201 fdasyqsmsidvrpvceeeeseckleleqtidlvldverskrkrdnpiprptpadelkCdtskPldkaeeqewsLeelFgrklkgacpl.........e 290
                 fda +qsm+id+rpvc +++sec++e++qtid+vld+erskr++d piprp                 ++  wsL+elFgr++ g+cpl         +
  KKY24382.1 210 FDAAWQSMAIDIRPVCPSDRSECVVEIQQTIDIVLDIERSKRPHDDPIPRPI---------------RSNIPWSLQELFGRPIAGSCPLieevgpnstP 293
                 ***************************************************8...............4789********************99998877 PP

       Gpi16 291 vclevaksskvyvqrkaseeakeakkedesskallsykleeekefdlaltskeaskeapleepllyaersltgsgqerGglqiiltnpsaseevefvyf 389
                 vcl+v++++kv +    s++a e+k+  + s + + y+l  +++fd++l+++e+++ +++ ++l++aer++tg+g+ +Gg+++il nps +++v+fvyf
  KKY24382.1 294 VCLKVPHDRKVLT----SAGAIESKSLPGAS-EERYYHLLPDQDFDITLPETEKEQIVSPGKELVHAERTITGHGAAQGGIRTILINPSFTDSVDFVYF 387
                 *************....78888888888888.78999**9*********************************************************** PP

       Gpi16 390 eslPWfvrvylhtLkvelddk.aekksesevikelyyrPaldrkrptqlelllelPaestvvltydfekaiLryteYpPDAnrGfdiaaAvitvleeks 487
                 eslPWf+r+++htL++e++++ +++  +se+i+ +yyrPa+dr+r+tqlel +++P++stv+l ydfekaiLryteYpPDAnrGf++a+Avi++l++ +
  KKY24382.1 388 ESLPWFMRPFVHTLRAEITETkLSSPPSSEIIQGMYYRPAVDRERGTQLELIISIPPASTVTLIYDFEKAILRYTEYPPDANRGFNVAPAVIRILSQGN 486
                 *******************998889999******************************************************************88877 PP

       Gpi16 488 sea....velrttslLlsLptPDfSMPYNViiltsTvlaLafGslfnlltrrfvaeeeaeekskkslkaklk 555
                  ++    v++rttslLl+LptPDfSMPYNViiltsTv+aLafGs++n+l+rrfva++e+++ + k++k  + 
  KKY24382.1 487 ATDhqpdVYIRTTSLLLPLPTPDFSMPYNVIILTSTVIALAFGSIYNMLIRRFVAADEVPRFDPKKIKGVII 558
                 7667788****************************************************9998888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 3631.87
//
Query:       KKY24383.1  [L=299]
Description: putative u1 snrnp splicing complex subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-73  247.4   0.1      2e-73  247.2   0.1    1.0  1  LUC7       LUC7 N_terminus
     0.0038   16.9   0.1     0.0055   16.4   0.1    1.2  1  DUF1241    Protein of unknown function (DUF1241)
  ------ inclusion threshold ------
      0.021   13.9   0.8      0.025   13.6   0.2    1.3  2  TelA       Toxic anion resistance protein (TelA)
      0.033   14.0   0.0      0.067   13.0   0.0    1.4  1  MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalli
       0.18   11.6   0.0       0.34   10.7   0.0    1.4  1  DASH_Duo1  DASH complex subunit Duo1


Domain annotation for each model (and alignments):
>> LUC7  LUC7 N_terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.2   0.1   5.6e-77     2e-73       2     239 ..       4     238 ..       3     248 .. 0.93

  Alignments for each domain:
  == domain 1  score: 247.2 bits;  conditional E-value: 5.6e-77
                 XXXXXXXXXXXXXXXXXXXXXXXXX.X-EEE--S--SSS-S--SSSS-S-EEEGGGHHHHHHHHHHHHHHHH-XXXXX..XXXXXXXXXXXXXXXXXXX CS
        LUC7   2 aaralLdeLmGrnrnlapsekkkkv.nfedpevCksylvkfCphdlfinTkadlGpCkkiHdeelkeeYeearkskkk..lgyeeeflrfleklledvd 97 
                 ++r+lL++LmG + n     ++++  +f+dp++C+sylv++Cphdlf+nTk+dlG+C+k+H+e+lk eY++    +++  +g+e +++r+++k++++++
  KKY24383.1   4 EQRKLLEQLMGDQYNGPGAGSRNANlTFTDPKICRSYLVGTCPHDLFTNTKQDLGACPKVHSENLKMEYDALPAAERSskYGFEYDYMRDMQKYIDECN 102
                 79*************98766555445********************************************9765555334******************* PP

                 XXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXX CS
        LUC7  98 rkiqkgkqrleltqeekeeeeeakakkqeqlkeleekiekllaeaeelgeeGkVdeaqklmkeveelkeekeeleqqyeaaaaneeseasqekkmkvCe 196
                 r+i+++++rle+t +e +++++      + +++l ++i++ l e+  lge+G V+ a + + +v + k+ ke++e++ +a   +++s  s ++k++vC+
  KKY24383.1 103 RRIDTAQRRLEKTPDEIRQTNAL----LKTISDLAKTINTGLLEISILGESGAVSLACSEFYKVRQAKHAKESAERELKAL--SDTSGPSGHQKLQVCD 195
                 *****************988887....8***************************************************97..889************* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..... CS
        LUC7 197 iCGaflivgDaqqRiedHlmGKqHlGyaklrealeelkekrek 239
                 +CGa+l+  D+++R++dH+ GK+HlGya++r+++e+l+++++ 
  KKY24383.1 196 VCGAYLSRLDNDRRLADHFYGKMHLGYAQMRRTYETLQKELKG 238
                 **************************************99876 PP

>> DUF1241  Protein of unknown function (DUF1241)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   1.5e-06    0.0055      78     128 ..      87     138 ..      64     146 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.5e-06
     DUF1241  78 eykversee.efqeLnkkaraLkkiLsriPdeindRktfLetIkeiAsaIkk 128
                 ey   r+ +  + e n++  + ++ L + Pdei   +++L+tI ++A +I  
  KKY24383.1  87 EYDYMRDMQkYIDECNRRIDTAQRRLEKTPDEIRQTNALLKTISDLAKTINT 138
                 6777777773567999999*****************************9975 PP

>> TelA  Toxic anion resistance protein (TelA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   7.1e-06     0.025      89     172 ..      95     180 ..      81     184 .. 0.84
   2 ?   -3.7   0.0       1.3   4.8e+03      77      98 ..     215     236 ..     203     237 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.1e-06
        TelA  89 akY.ekaeeqidkIvkeLekgqdellkdnaaLdqlyeknleyfkeLekyiaaGekkleeldekllpeleakaeasgdped.aqalr 172
                 +kY ++ ++ id+  ++Lek  de+++ na L++  +  ++  + L +  ++Ge     l   +  +++++++a+++ e+  +al+
  KKY24383.1  95 QKYiDECNRRIDTAQRRLEKTPDEIRQTNALLKTISDLAKTINTGLLEISILGESGAVSLACSEFYKVRQAKHAKESAEReLKALS 180
                 444378999**********************************************9999999999999998886655543244444 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.3
        TelA  77 fkkaknkieklfakYekaeeqi 98 
                  +k+    +++ + Ye++++++
  KKY24383.1 215 YGKMHLGYAQMRRTYETLQKEL 236
                 4566666777778888887765 PP

>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.9e-05     0.067      96     149 ..      92     145 ..      77     158 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.9e-05
                 ..............HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  96 ieiqkeindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaa 149
                  ++qk i+++ + ++ +++r e++ +++++t+  lk+i++ ++ +++ + ei+ 
  KKY24383.1  92 RDMQKYIDECNRRIDTAQRRLEKTPDEIRQTNALLKTISDLAKTINTGLLEISI 145
                 478999999*************************************99999985 PP

>> DASH_Duo1  DASH complex subunit Duo1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.5e-05      0.34       5      46 ..      87     128 ..      86     135 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.5e-05
   DASH_Duo1   5 EleqLrkinevienviesLkkaksniervketvestntLLdk 46 
                 E++ +r++ + i+  +  +++a+  +e+    + +tn+LL++
  KKY24383.1  87 EYDYMRDMQKYIDECNRRIDTAQRRLEKTPDEIRQTNALLKT 128
                 6677899*********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       895  (0.0499191); expected 358.6 (0.02)
Passed bias filter:                      744  (0.041497); expected 358.6 (0.02)
Passed Vit filter:                       122  (0.00680462); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 1884.99
//
Query:       KKY24384.1  [L=385]
Description: hypothetical protein UCRPC4_g02494 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1341  (0.074795); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 2470.34
//
Query:       KKY24385.1  [L=496]
Description: putative mfs sugar [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     6e-107  358.3  29.4     7e-107  358.1  29.4    1.0  1  Sugar_tr        Sugar (and other) transporter
    1.9e-21   76.4  27.7    1.9e-21   76.4  27.7    1.8  2  MFS_1           Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.22   12.2   0.0       0.48   11.1   0.0    1.5  1  Tn7_Tnp_TnsA_C  TnsA endonuclease C terminal


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.1  29.4  1.2e-110    7e-107       2     439 ..      51     492 ..      50     495 .. 0.95

  Alignments for each domain:
  == domain 1  score: 358.1 bits;  conditional E-value: 1.2e-110
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTS CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkn 100
                 +++ ++g++lf Ydtg++g++l+l++f ++fg++ +++++ +     +  vsi+++Ga++G++++ ++++r+GR++sl+ +++ f+ig+ lq + +   
  KKY24385.1  51 VTCCCIGSFLFAYDTGIVGGVLSLSSFERDFGYTAAQKTNVN-----STAVSILQAGAFFGCFLIWPITNRLGRRYSLILCSITFCIGTTLQTINT--H 142
                 68999********************************98887.....999********************************************99..7 PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-...TTHHHHHHHCCHHHHHHHHHHGGGS---HH CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn...adgwrillglqlvpallllilllflPESPr 196
                 s+  +++gRv++G+gvG+++vlvP++ +E+Apk++Rg+l+s++ql+ ++G  ++++++++++   +   + +w+i++glq+vp  l+ +++lf+ ES r
  KKY24385.1 143 SLGCFYAGRVISGLGVGGVTVLVPIFSAEMAPKEIRGKLGSCFQLFFAVGVCLSYWVDYIVDVAVSsdkSAQWQIPVGLQFVPGFLVGFGMLFVKESSR 241
                 8************************************************************65555589****************************** PP

                 HHHHTT-HHHHHHHHHHHHHC...HHHHHHHHHHHHHHHHHHH......HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH.H CS
    Sugar_tr 197 ylvekgkeeeakevlaklrge...edadrelaeekdsleaeqeee.kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks.l 290
                 +lv+kg+++ea + l+++rg    +    e+ae+++ +e+e +++   ++kel+   + r+r++i + +q++ qltG+ ++ yy+p+if+ +g   + +
  KKY24385.1 242 WLVKKGRYQEAFKNLKWVRGGedtDVLRAEFAEIQAGIEEELRQTeGLTLKELWLPAN-RYRVFISITIQLCAQLTGNTSLAYYAPQIFKAVGAGSEsM 339
                 *****************88873335556799999999999977778999******977.***********************************9888* PP

                 HHHHHHHHHHHHHHHHHH.HHHHHS-SHHHHHHHHHHHHHHHHHHH...HHHHTTSS......CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTH CS
    Sugar_tr 291 lvtiivgvvnfvatfvai.flvdrfGRRtllllGaagmaicfvilg.ivalllvaks...kaasivaivfialfialfalgwgpvpwvlvsElfpqsvR 384
                  +t+ +g+v+++ +   i f+v++fGR++ ++lGa+ m  +++il+  va  ++++s   ++a+i+ai+ i+  ++ f+++wgp+pw+++ E+fp+++R
  KKY24385.1 340 FITGFFGIVKIIGCATFItFFVEQFGRKKSFMLGAFAMGSFMLILAlVVATHTPKASggvTSAGIAAIFIIYAEAFSFNMSWGPLPWLYIGEIFPSRIR 438
                 ***********98777744***************************888888888889***************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS-- CS
    Sugar_tr 385 skalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpe 439
                  ++  + +a++wl+nf +s+++p + e+i  +++fl+fa+++++ i++  f + e
  KKY24385.1 439 EIGVGLGAASQWLFNFMMSQITPHAIENIA-WKTFLMFAIFNYAIIFYSHFILKE 492
                 ******************************.*****************9999887 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4  27.7   3.1e-25   1.9e-21       2     331 ..      55     435 ..      54     463 .. 0.81
   2 ?   -2.0   0.8      0.21   1.3e+03     211     236 ..     467     492 ..     447     495 .. 0.65

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 3.1e-25
       MFS_1   2 llaaflsalarsilgpalpl.alaedlgispse....igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa.sslwlllvlrv 93 
                 +++ fl a++ +i+g +l+l    +d+g+++++     ++++++  +ga+++ +++ ++++r+Grr  l+l+ ++f++g + l  +  +sl  ++++rv
  KKY24385.1  55 CIGSFLFAYDTGIVGGVLSLsSFERDFGYTAAQktnvNSTAVSILQAGAFFGCFLIWPITNRLGRRYSLILCSITFCIG-TTLQtINtHSLGCFYAGRV 152
                 799******************************76666669999999999999**************************.4444243366559****** PP

       MFS_1  94 lqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspke 186
                 ++Glg g+++ ++ ++ a+++pke rg+  ++++++f++G+ l + +  ++  +++      W+ +  +  + ++l++      l++++++r+ +++ +
  KKY24385.1 153 ISGLGVGGVTVLVPIFSAEMAPKEIRGKLGSCFQLFFAVGVCLSYWVDYIVDVAVSsdksaqWQIPVGLQFVPGFLVGF---GMLFVKESSRWLVKKGR 248
                 *************************************************99988888********************99...88888888889888888 PP

       MFS_1 187 ee.................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls..glllaglll 250
                                                     +t++  l+++w    + +v+ ++ i l+   +g+++l ++ p +  +  g +  + + +++++
  KKY24385.1 249 YQeafknlkwvrggedtdvlraefaeiqagieeelRQTEGLTLKELWLPANRYRVFISITIQLCAQLTGNTSLAYYAPQI-FKAVGAGseS-MFITGFF 345
                 778899999999999999999999999988888888888888888999999999998899999999999999*******7.5555555555.7777799 PP

       MFS_1 251 allalvgailallagrlsdrlgrrrrlllallllllaalglallavt........ssavllllvlvliGf.glgfv...fpsllalasdlapp 331
                 +++ ++g++   ++++++  +gr++  +l+ +++  + l+lal+ +t         +++ +++++++    +++f     p+ + ++ + +p 
  KKY24385.1 346 GIVKIIGCAT--FITFFVEQFGRKKSFMLGAFAMGSFMLILALVVAThtpkasggVTSAGIAAIFII-YAeAFSFNmswGPLPWLYIGEIFPS 435
                 9999999988..***********88888888888888888888888877777664222222223333.2223333333345555555555555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.21
       MFS_1 211 illialllfffgfsglltllplylqe 236
                 i++ ++l+f+++++++ +++ ++l+e
  KKY24385.1 467 IAWKTFLMFAIFNYAIIFYSHFILKE 492
                 46777777777777777777666665 PP

>> Tn7_Tnp_TnsA_C  TnsA endonuclease C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.1e-05      0.48       5      51 ..     251     294 ..     249     311 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.1e-05
  Tn7_Tnp_TnsA_C   5 vlvkNikwlhpyrriedddlseeeleelaelllerlrenpdttlrel 51 
                     +++kN+kw++   ++   d+   e++e++  + e+lr+ +  tl+el
      KKY24385.1 251 EAFKNLKWVRGGEDT---DVLRAEFAEIQAGIEEELRQTEGLTLKEL 294
                     679**********86...4557899*******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.52
# Mc/sec: 2849.01
//
Query:       KKY24386.1  [L=486]
Description: putative adenylosuccinate lyase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-22   78.0   0.0    1.2e-21   77.4   0.0    1.3  1  Lyase_1   Lyase
    3.9e-16   59.4   0.0    9.6e-16   58.1   0.0    1.7  1  ADSL_C    Adenylosuccinate lyase C-terminus
  ------ inclusion threshold ------
        0.1   12.2   0.1       0.24   11.0   0.0    1.7  2  TPD52     Tumour protein D52 family


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.0   2.1e-25   1.2e-21      50     307 ..      55     309 ..      22     313 .. 0.80

  Alignments for each domain:
  == domain 1  score: 77.4 bits;  conditional E-value: 2.1e-25
                 HHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHHHHHHTT...HSSGIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH CS
     Lyase_1  50 aaaiikaldevleegklddqfvlkviqegsgtavnmnlnevigellg...ekvepndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkek 145
                  +++i+ +++ +  +  +  f+++  +e      +++  +v++ + +      ++++ +h g++s    + a  ++l++ l + Llp++ + i+ l + 
  KKY24386.1  55 SDQAISQMRASAT-MTDK-DFEIAAVEE------KRRRHDVMAHVHAyglSAPAAAGIIHWGATSCYCTDNADLIFLRDGL-DLLLPKIATCIKKLADF 144
                 4444444444444.2223.355544444......444445555222233567999**************************.88*************** PP

                 HHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTCEETTTTTTTSSTT....TSCCTHHHHHHHHHHHHHCST.EESSSHHHHH CS
     Lyase_1 146 akefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllvellgggtavgtgl....nadpefaelvakelakvtglp.vkapnsfeav 239
                 a e+k+ + +G+Th+q+A+ +t g+    + + l +d+ ++++++  l+   ++g t++ + +    + d    e++ + +++ +g++  +a  +  ++
  KKY24386.1 145 ADEYKSLPCLGYTHGQPAQLTTVGKRACLWIQDLLMDIRNIERARGDLRFRGVKGTTGSQASFlqifDGDHDKVEKLDELVTQKAGFGhAPAYIISSQT 243
                 **********************************************9999999999888776421113344334445555557778887788888899* PP

                 HC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSSC-TTSTTTEBTHHHHHHHHHH CS
     Lyase_1 240 sdrDavvellgalkllatsLskfaeDlrllssgeaglvelslaesepGSSiMPgKvNPvqlElltgva 307
                  +r   v+++ al+ + +   ++a D+r l++  + + e+ + + ++GSS M  K+NP  +E + ++ 
  KKY24386.1 244 YSRKIDVDVSNALSSFGATCQRLATDIRHLAT--FKELEEPFEKDQIGSSAMAYKRNPMRSERICSIG 309
                 ********************************..****************************987765 PP

>> ADSL_C  Adenylosuccinate lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   1.6e-19   9.6e-16       1      73 []     379     461 ..     379     461 .. 0.95

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 1.6e-19
                 TGGGHHHHHHHHH.HTH-HHHHHHHHHHHHHHHHHC.........HHHHHHT-HHHHC.HHCHHHHHT-GGGCCTTHHHHHHHH CS
      ADSL_C   1 GlifservllaLv.kglgReeAyelVqeaamkawee.........llelLaadpevkk.seeeldalfdpayylgsadeivdrv 73 
                 +++++e+++++ v kg++R++A+e ++ ++++a++          l+e+++ dp +      +ld+l+d ++++g+a+++v+++
  KKY24386.1 379 PFMATENIIMRIVaKGGSRQDAHEHIRVLSHQAADIvkkqgkandLIERIKGDPFFEPiVN-DLDELLDAQTFIGRAPQQVEKF 461
                 79***********88*******************87*********************7444.9******************986 PP

>> TPD52  Tumour protein D52 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.1e-05      0.24      99     136 ..     248     287 ..     232     309 .. 0.78
   2 ?   -3.9   0.1       1.5     9e+03     116     135 ..     459     478 ..     458     481 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.1e-05
       TPD52  99 agqktsaalstvgsaisrklgdmrnsptFkSfEekve..t 136
                 +   +s als++g + +r   d+r  +tFk +Ee  e  +
  KKY24386.1 248 IDVDVSNALSSFGATCQRLATDIRHLATFKELEEPFEkdQ 287
                 4557899***************************988443 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.5
       TPD52 116 rklgdmrnsptFkSfEekve 135
                 +k+  +  s + k +E+k++
  KKY24386.1 459 EKFLKLEVSESLKPYEDKLG 478
                 57888888999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.52
# Mc/sec: 2838.14
//
Query:       KKY24387.1  [L=495]
Description: putative mfs allantoate [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-23   80.9  27.7    1.4e-22   80.1  27.2    1.5  1  MFS_1          Major Facilitator Superfamily
    4.1e-05   23.1   4.5    4.1e-05   23.1   4.5    2.5  2  MFS_4          Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
        2.6    8.4   5.4        1.5    9.2   0.2    3.0  4  Cytochrom_B_C  Cytochrome b(C-terminal)/b6/petD


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1  27.2   2.4e-26   1.4e-22      10     353 .]      70     420 ..      65     420 .. 0.79

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 2.4e-26
       MFS_1  10 larsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllll.fasslwlllvlrvlqGlgagalfpag 106
                 ++ s+ ++++   l+ed +++++ +++++++ ++g +v+++p+     rf   + v  +++l+ al++l ++ f   +  +++ r++ G+ ++++ pa 
  KKY24387.1  70 MQPSLNYSNAY-GLQEDTHMTGQDYSWVASALYFGWLVGAYPANLGLHRFPIAKfVGSIMFLWAALCMLQAAaF--DFSGFFAIRFFLGFVEACVSPAW 165
                 55566666676.89************************************977768889999999995555534..4447******************* PP

       MFS_1 107 aaliadwfpkeergraigllsagfslGailgpllggllasslg.....Wravfy.....ilaivsllafvlfllllpeepperkrkspkeee....... 188
                 + l++ ++++ee+++ ++++ +++++++ilg+ll+  l ++ g     W ++++     +++++++l+++++l++lp+ p++ k +s+ e+        
  KKY24387.1 166 VLLTSSLWTREEQPLRTSFWISTNGVSSILGALLSWGLGHATGssipnWKLIYLhkrqqVVGVITFLWAIVILMFLPDGPHNGKMFSEYERVvavwris 264
                 ***************************************99999********8766666***********999******************88877777 PP

       MFS_1 189 ...kgtgpaplvp..awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllall 282
                     g+++++++   a +all ++ l+ ++++ l+ ++ + ++  ++   l + +g+s +l ++ll + +++v +++++++g++s+    ++++ ++l+
  KKY24387.1 265 rnkTGVKHTKFLGyqAKEALLDPKTLL-YILMGLCYGILNGSVANFMSA-LIKGFGFS-ALRSSLLQMPGGAVELVSCIILGYISTI---KNMTGVTLI 357
                 665444444444487788888888776.666666666555556666666.6*******.899999999999999999********87...444444444 PP

       MFS_1 283 llllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                       l+ + l +     + l++++ i    ++ ++ s++    ++a+  +++ ++g+   +++ g ++gp
  KKY24387.1 358 -----RLLTISLEHR----WNLVACAWIQNfLGSPIVLSWTLPGLNVAGHTKRAVVVGISFCFYCTGNIIGP 420
                 .....4444444455....55566666555244444444444445555777888999999999999998887 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   4.5   6.8e-09   4.1e-05      19     114 ..      82     181 ..      81     248 .. 0.73
   2 ?    0.9   1.0     0.037   2.2e+02     174     265 ..     267     361 ..     251     452 .. 0.70

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 6.8e-09
       MFS_4  19 llaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvv....lvfgsslvlahaaaa 113
                 l ++++++  + +++a+a y G+LvGa  a  +l++ +    +   +++ ++l +  a++  f+ f++iRf +G + A+v      ++ssl  ++ ++ 
  KKY24387.1  82 LQEDTHMTGQDYSWVASALYFGWLVGAYPANLGLHRFPIAKFVGSIMFLWAALCMLQAAAFDFSGFFAIRFFLGFVEACVspawVLLTSSLWTREEQPL 180
                 56899999**********************99988876555444555555566666677778************8766542221344555555554554 PP

       MFS_4 114 r 114
                 r
  KKY24387.1 181 R 181
                 4 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.037
       MFS_4 174 lreasaaaeaakaeqkslpllalllaYglaGfGYii....tatFlvaiardgaggalleallWllvGlaaivgvlvwlrvakrsglrralaaalli 265
                 ++  ++  +    ++k++ l   +l+Y l+G+ Y i    +a F++a+++  + +al  +ll +  G   +v++ +   ++  +++  ++ + ll+
  KKY24387.1 267 KTGVKHTKFL-GYQAKEALLDPKTLLYILMGLCYGIlngsVANFMSALIKGFGFSALRSSLLQMPGGAVELVSCIILGYISTIKNMTGVTLIRLLT 361
                 3333333333.5566666677778888888888865344468888888888666666666666666666677777777777766666666666554 PP

>> Cytochrom_B_C  Cytochrome b(C-terminal)/b6/petD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.26   1.5e+03      29      61 ..     121     153 ..     109     191 .. 0.73
   2 ?    9.2   0.2   0.00025       1.5      29      64 ..     223     258 ..     193     299 .. 0.77
   3 ?   -1.8   0.1      0.63   3.7e+03      73      93 ..     336     356 ..     322     364 .. 0.73
   4 ?   -2.6   0.0       1.2   6.9e+03      60      81 ..     431     452 ..     426     466 .. 0.44

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.26
                    SHHHHHHHHHHHHHGGGCHHHH---SSSSSTT- CS
  Cytochrom_B_C  29 akllGvvamgaaivilfllpwldrskvksiryr 61 
                    ak++G ++++ a ++++    +d s   +ir+ 
     KKY24387.1 121 AKFVGSIMFLWAALCMLQAAAFDFSGFFAIRFF 153
                    788888888888888887777777776666654 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00025
                    SHHHHHHHHHHHHHGGGCHHHH---SSSSSTT-.HH CS
  Cytochrom_B_C  29 akllGvvamgaaivilfllpwldrskvksiryrkpl 64 
                    ++++Gv++++ aivil++lp   ++     +y + +
     KKY24387.1 223 QQVVGVITFLWAIVILMFLPDGPHNGKMFSEYERVV 258
                    7899****************8777766666666444 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.63
                    HHHHHHHHHHHTS-SSCCHHH CS
  Cytochrom_B_C  73 vvsfvvLgylGvqppeevavl 93 
                    +vs+++Lgy+ + +  + ++l
     KKY24387.1 336 LVSCIILGYISTIKNMTGVTL 356
                    689999999998665554444 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 1.2
                    T-.HHHHHHHHHHHHHHHHHHH CS
  Cytochrom_B_C  60 yrkplakvllallvvsfvvLgy 81 
                    y++ +  ++++  ++ +v + y
     KKY24387.1 431 YKSAIKGLIICYAAAIVVQVIY 452
                    4433333333222222223333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 2996.36
//
Query:       KKY24388.1  [L=544]
Description: putative amidase family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-96  323.5   0.8    5.8e-96  322.2   0.8    1.6  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.2   0.8  3.3e-100   5.8e-96       1     451 []      85     532 ..      85     532 .. 0.88

  Alignments for each domain:
  == domain 1  score: 322.2 bits;  conditional E-value: 3.3e-100
                 HHHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT.......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEE CS
     Amidase   1 elveaflkrieavneklnalvtvfieealaqAakldkkra.rgkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgk 98 
                 e+v a++kr++ +++  ++l ++++ +a ++A+kld++++ +gk+ gpLhG+P+++K++++ kg++++ G+ +++  p+++D+ ++e +k+aGav++ k
  KKY24388.1  85 EVVTAYCKRAAIAQQLCSCLTEIAFLDAVEDAKKLDEQYKsTGKTVGPLHGIPMTFKECFHLKGYDASDGYISRAFDPSTYDSYMIEIVKAAGAVVIAK 183
                 79************************************************************************************************* PP

                 E--SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB-.....-SST.TT-EEE CS
     Amidase  99 TnmdefamgsstensvfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvv.....ales.sldvvG 191
                 Tn++++++++++ n+vfg+t+NP+ ++ t+GGSSGG+++ +A +++ l+iGtD+GGSiR+PA+ +g++G KP++g++S  g       ++ + + +v G
  KKY24388.1 184 TNTPQSMLVAEAHNNVFGRTKNPIVSQLTSGGSSGGEGVSLAFHGSALGIGTDVGGSIRVPAASNGVYGYKPSVGVLSMLGYAasnwvGMNTgIPAVSG 282
                 ***********************************************************************************999995555156889* PP

                 EEESSHHHHHHHHHHHBS--TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHHHHHH CS
     Amidase 192 plarsvedlalllrvilgedpkdstssvipeesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelpsleealslyyl 290
                 plars++dl ll rv+   +p++ + + ip        e++  ++  ++Gvv +    +++p+v+ra+++a+++L++aG+ev+e+++ps++e+  +  +
  KKY24388.1 283 PLARSARDLSLLTRVVRDAQPWKVDPAAIP-----GICEQGAVERRPVVGVVYKSAL-TPHPPVRRALQEAVAKLQAAGIEVKEFDPPSFAEFGNVARE 375
                 ****************************98.....455677788899*******995.***************************************** PP

                 HHHHHHHHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCC..BSEEEEESSSSS-- CS
     Amidase 291 ilvaeassnlarylgvryerlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafee..lDvllsPtaptpap 387
                 + ++++ s+ +r+l++           + ++p+  +          +  ++ +  +e      ++  + + +l++++   ++e  +D++l+P+ p++a+
  KKY24388.1 376 LFTVDGLSYPKRELKK---------AGEPVVPSVAK--------FGFLDMTAKSMEE-----TWTWNAKKGALQKDMLDRWQEaqIDIVLCPAGPHTAV 452
                 ******9885543333.........22334444444........3444444333333.....23333334456666666666666************** PP

                 BCCCCCHHHCSHHHHHGCCTTT...HHHHHTT--EEE......EECCCCT...................TECEEEEEEESTT-HHHHH CS
     Amidase 388 rlgekdktidsytvlynlldftavvvpvnlaglpals......vpagksed..................glPvGvqvigkafqeetlL 451
                   ge++    sytv +n+ d +a  vp++ ++   +                                 g+Pv++q++g+++ +e+lL
  KKY24388.1 453 LPGEWRD--VSYTVTWNVTDQPAIIVPFSSVDPSVDVkdtetfK------PlssddeqsyamydpelmaGAPVALQLVGPRLGDEQLL 532
                 *****98..68******************999887764444444......25555568****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3755.70
//
Query:       KKY24389.1  [L=1096]
Description: putative pab-dependent polyspecific ribonuclease subunit pan2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-86  290.6   0.0    2.5e-86  290.2   0.0    1.2  1  UCH_1     Ubiquitin carboxyl-terminal hydrolase
    1.7e-11   45.0   0.0    1.1e-10   42.3   0.0    2.4  1  RNase_T   Exonuclease


Domain annotation for each model (and alignments):
>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.2   0.0   2.8e-90   2.5e-86       1     320 []     377     698 ..     377     698 .. 0.91

  Alignments for each domain:
  == domain 1  score: 290.2 bits;  conditional E-value: 2.8e-90
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   1 sGLEnhivnsYlNslLQvlyfipplrnlalshlakeckkehcLlcElgflfdmldkakglncqasnFlralssipeasalglileeeeetekssaisls 99 
                 sGLE+hi+nsY+N+lLQ+++f+p++rnlal+h+a++c  + c lcElgflfdml+ka g+ncqa+n+l++lss+peas+lg++ ee       + +sl+
  KKY24389.1 377 SGLETHISNSYTNALLQLYRFMPLIRNLALHHAATSCFADPCHLCELGFLFDMLEKAAGQNCQATNLLKTLSSSPEASKLGIL-EE------GNVQSLT 468
                 8*********************************************************************************9.44......456689* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 100 sliqsfnrflldqlekelketkknsseeesaieqllgtkaettirclkCgsek.srksstlvldlkyP..kpsnekkeakvtfasilksslerekttra 195
                   i+  n+f+l++++++ ++       ++++++++lgt+  t++rcl+Cg e+ +r++ t+ ++l+yP   p++ +++a  +f+s+lk+sle+    r+
  KKY24389.1 469 GRIEAANKFFLHRIASDHQSLV----GNTDEVSSCLGTSGWTSQRCLHCGDETvVRSDPTYLTELTYPniDPKHASRNAALRFSSVLKASLENIAPGRG 563
                 *****************99986....588999************************************766888899999******************* PP

                 xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
       UCH_1 196 wC..ekCkryqpteqrktvknlPpvLalnakleeeeelelwktknwlpleiklsldedknl.eeklkeerekakaekeikvYeLqsvvvhigdske.sg 290
                  C   kCk+yq++++r+t+ ++P+ L++na l++ + ++lw+t++wlp+ei++ ++ ++    e ++   ++++++ +  vYeL+++v++i+ +++ ++
  KKY24389.1 564 YCpnAKCKSYQQMSRRRTMSQMPYTLMINAVLTNPKYRQLWETPGWLPTEIGVLIQGRSLYvFEGNDLALHQRNNTAGLLVYELVGFVAEIDIAEHhRP 662
                 **44479**********************************************999988779444444444556699***************99767** PP

                 xxxxxxxxxxxxxxx......xxxxx..xxxxxxxxxx RF
       UCH_1 291 hLvslvkvaekeler......dppes..qWylFNDflV 320
                 hLvs+++v  + +        +  ++  +W+lFNDflV
  KKY24389.1 663 HLVSFINVDVSSSGAaaesnpT--KQsaNWHLFNDFLV 698
                 *******988876667776422..3367********98 PP

>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   1.3e-14   1.1e-10       2     144 ..     774     924 ..     773     984 .. 0.92

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 1.3e-14
                 EEEEEESSSTT............CTTS-EEEEEEEEEETTCC..EEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHHHTC CS
     RNase_T   2 viDlEttglda............kekdeiieiaaisidggen..eigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrklal 86 
                 ++D+E++ l++            +++++   +a++s+ +g    e+++++++y+   ++  + d+ t+++gi++ +ld + s+++ ++ +k  ++kl+l
  KKY24389.1 774 ALDTEFVDLEKaeidvkadgtqeTIRPSKSGLARVSVLRGAGeqEGKPFIDDYITIRDP--IVDYKTQYSGIRPGDLDIRTSTHNLVP-LKVAYKKLWL 869
                 6888888888888888999998878999999*******999999***************..***********************9999.********** PP

                 CCETTTCEEEESSHHHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHCHHHHHHHHHTT CS
     RNase_T  87 lvahnaafdvgflraadkrilkkevpkrnqfldtlildkatlkelartsldklaeklg 144
                 l + + +++vg++ a d+r ++++vp  +q++dt  l  +  k+++  sl++la+ + 
  KKY24389.1 870 LLNLG-CVFVGHGLASDFRKINIQVP-KSQTVDTQYLYLQPGKNRRL-SLRYLAWAVF 924
                 **988.********************.88899998888888788876.8888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1096 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 7073.34
//
Query:       KKY24390.1  [L=430]
Description: putative bsd domain-containing protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.1e-18   64.6   0.5    1.4e-17   63.4   0.5    1.7  1  BSD          BSD domain
  ------ inclusion threshold ------
      0.047   13.8   3.0       0.71   10.0   0.7    2.8  2  ApoLp-III    Apolipophorin-III precursor (apoLp-III)
      0.052   13.4   0.3        0.1   12.5   0.3    1.4  1  NACHT_N      N-terminal domain of NWD NACHT-NTPase
       0.56    9.3   4.7       0.17   11.0   0.3    2.0  2  NAP          Nucleosome assembly protein (NAP)


Domain annotation for each model (and alignments):
>> BSD  BSD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.5   3.2e-21   1.4e-17       2      57 ..     248     303 ..     247     304 .. 0.95

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 3.2e-21
         BSD   2 dnkfkld.kteeiaqsllkedpeLrklynelVPskvseeqFWsrYfyllrahaieee 57 
                 +++f++  kt++i+++l++ +peLr++++ lVP+kv++ +FW+rY++l++ +++ee 
  KKY24390.1 248 KSDFNVKdKTDDISKDLEQ-YPELRRAMELLVPEKVEYPDFWCRYYFLRLVIETEER 303
                 68999999***********.**********************************995 PP

>> ApoLp-III  Apolipophorin-III precursor (apoLp-III)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.98   4.4e+03      81      95 ..      37      51 ..      20      58 .. 0.63
   2 ?   10.0   0.7   0.00016      0.71      37     121 ..      74     158 ..      69     202 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.98
   ApoLp-III 81 vkkkaqelqekvQsg 95
                + ++ q+l++++Q+ 
  KKY24390.1 37 TSESRQNLNTEFQET 51
                445555566666654 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00016
   ApoLp-III  37 qlkqvikslqeelkkksdeleealkevkkkieetadklseenPevkkkaqelqekvQsgvqslvkesqklaeslkensqeakekl 121
                 q +++ ++++ e+ ++s+ + + ++++k+ +++ +++ls ++Pe  k+  + +++  s  +s  +   k++  +++ ++ea++ l
  KKY24390.1  74 QGESYYAEARKEVEEASGDAIKGFSDLKASLVNHTKTLSLAEPEDDKEGAAASSTEDSTAKSQGEADRKTDDLISRFKSEASKRL 158
                 557889999*******************************999987765555554444444444444455555555555555555 PP

>> NACHT_N  N-terminal domain of NWD NACHT-NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   2.2e-05       0.1      21     101 ..     106     192 ..      92     199 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.2e-05
     NACHT_N  21 eYekils.....eeeekesskkeeeseekeeeseeekrqeqlkrlvekglkrvekkkkakegiaea.aevvlavkdlideavkaspe 101
                 +  k+ls     +++e ++++++e+s++k++ +  +k+ + + r  +++ kr+++ +ka+++++ea +++ +++++++ eav+++p 
  KKY24390.1 106 NHTKTLSlaepeDDKEGAAASSTEDSTAKSQGEADRKTDDLISRFKSEASKRLKEIEKAEDAADEAlLRFGTNIRNFLREAVSVAPP 192
                 45677777777666667778888888889999999999999999999****************99835899*************997 PP

>> NAP  Nucleosome assembly protein (NAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   3.8e-05      0.17      17     121 ..      76     180 ..      69     188 .. 0.88
   2 ?   -0.5   0.5      0.13   5.7e+02      52      86 ..     335     368 ..     297     427 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.8e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--S.............................--SSSSTTSTTHHHHHHHTSHHHHTT--HHHHHHHT CS
         NAP  17 eaefqeevlelekkyaalykplyekrseIingesepteeeveakedekeeeeeeeekeeekeeekkeeakgipeFWltvlknvellaeliqerDepiLk 115
                 e+ ++e+  e+e+   + +k + + ++ ++n +++ +  e e  ++  + +++e+++ +++ e+++++ + i +F  ++ k  + +++     De  L+
  KKY24390.1  76 ESYYAEARKEVEEASGDAIKGFSDLKASLVNHTKTLSLAEPEDDKEGAAASSTEDSTAKSQGEADRKTDDLISRFKSEASKRLKEIEKAEDAADEALLR 174
                 667888999999999999999999**********99999997777777777788899999999999999****************************** PP

                 TEEEEE CS
         NAP 116 hLkdir 121
                 + ++ir
  KKY24390.1 175 FGTNIR 180
                 *99998 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.13
                 ............................--SSSST CS
         NAP  52 pteeeveakedekeeeeeeeekeeekeeekkeeak 86 
                  ++ee++++ed++ee++  ++ +++k++ ++++ +
  KKY24390.1 335 LDQEEMTWGEDSDEEDT-PSTPQAKKSNGSSTTIH 368
                 34788888877655555.33333333333333334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       840  (0.0468515); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2951.91
//
Query:       KKY24391.1  [L=228]
Description: putative pre-rrna processing [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-14   54.0   1.9    3.5e-13   50.0   1.9    2.4  1  WGG             Pre-rRNA-processing protein TSR2
     0.0021   18.1   0.1     0.0021   18.1   0.1    1.7  2  RRP7            Ribosomal RNA-processing protein 7 (RRP7) C-t
  ------ inclusion threshold ------
       0.25   10.6   4.2       0.31   10.3   4.2    1.1  1  NOA36           NOA36 protein
       0.41   10.4   9.7       0.49   10.1   9.7    1.1  1  Cwf_Cwc_15      Cwf15/Cwc15 cell cycle control protein
        1.5    9.2  10.3        3.4    8.1  10.3    1.6  1  PBP1_TM         Transmembrane domain of transglycosylase PBP1


Domain annotation for each model (and alignments):
>> WGG  Pre-rRNA-processing protein TSR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   1.9   9.7e-17   3.5e-13       5      79 ..      33     117 ..      29     118 .. 0.82

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 9.7e-17
         WGG   5 valilhlWtaLklavengwggpd..........sadkrdwlagaivdlfkakeeldqedvedvLlqvmedeFevnveDdSaeevA 79 
                 v+l l+lW+aL+lav+                  ++ rdw+ gai +++++ +  d +d+e+vL qv++deFev++eD+S+  +A
  KKY24391.1  33 VSLHLSLWPALSLAVSLYTSPAPspsnpspattGSEVRDWFSGAISSMIQEGQIRDIDDLEEVLIQVVSDEFEVVIEDGSETTIA 117
                 8999***********8644332212223344447999************99999****************************999 PP

>> RRP7  Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   1.4       4.3   1.5e+04      34      39 ..     176     181 ..     156     191 .. 0.53
   2 !   18.1   0.1     6e-07    0.0021      25      51 ..     199     225 ..     194     228 .] 0.86

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 4.3
        RRP7  34 kkeeev 39 
                 +  +e+
  KKY24391.1 176 DTSDEE 181
                 111122 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 6e-07
        RRP7  25 eeeekkeekkkeeevDeDGfvtVtrgk 51 
                 e+ e+ +++k+e evDeDGf++V+rg+
  KKY24391.1 199 EASERPRREKMEPEVDEDGFTKVVRGG 225
                 678899999****************76 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   4.2   8.7e-05      0.31     272     297 ..     168     193 ..     114     207 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 8.7e-05
       NOA36 272 egdedddddddeedddeeeddedeee 297
                  +  dd++d+ +e+dd+e+dde+  +
  KKY24391.1 168 IEVADDEQDTSDEEDDDEDDDEEMGD 193
                 22334444444444444444444333 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   9.7   0.00014      0.49     108     164 ..     156     212 ..      90     219 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00014
                 ..------------------------------------------------------- CS
  Cwf_Cwc_15 108 areidaddedseeeeeeeeeesdddsdsdsdddddedetaeLlrELekikreraeek 164
                 ++++da +  ++ e +++e++ +d++d+d+ddd++  +   L+   e+ +re++e +
  KKY24391.1 156 KAKVDAKSLGKRIEVADDEQDTSDEEDDDEDDDEEMGDAPDLVEASERPRREKMEPE 212
                 357777777776666666677777777777777777788899999999999999865 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  10.3   0.00095       3.4      21      67 ..     161     206 ..     151     212 .. 0.46

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00095
     PBP1_TM  21 arkkasrrrrrdddyddeyddeedDdd.dddeeeevprkgkkkkpprk 67 
                 a++  +r  + dd+ +d  +deedDd+ dd+e  + p   ++++ pr+
  KKY24391.1 161 AKSLGKRIEVADDE-QD-TSDEEDDDEdDDEEMGDAPDLVEASERPRR 206
                 33333333333444.44.455555554155555566666555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       825  (0.0460148); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 1404.90
//
Query:       KKY24392.1  [L=710]
Description: putative eukaryotic peptide chain release factor gtp-binding subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.6e-43  146.0   0.0    1.5e-42  145.4   0.0    1.3  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    2.8e-31  108.1   0.0      6e-31  107.0   0.0    1.6  1  GTP_EFTU_D3  Elongation factor Tu C-terminal domain
    1.8e-07   31.4   0.1    4.1e-07   30.3   0.1    1.7  1  GTP_EFTU_D2  Elongation factor Tu domain 2
     0.0031   17.6   0.1      0.016   15.3   0.1    2.1  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
        1.6    7.5  16.9        2.4    6.9  16.9    1.1  1  Mitofilin    Mitochondrial inner membrane protein
        7.1    6.5  16.0         25    4.7  15.3    2.0  2  SRP-alpha_N  Signal recognition particle, alpha subunit, N-te


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.4   0.0     5e-46   1.5e-42       1     188 [.     275     493 ..     275     528 .. 0.91

  Alignments for each domain:
  == domain 1  score: 145.4 bits;  conditional E-value: 5e-46
                 TCEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHST.............HCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHH CS
    GTP_EFTU   1 krirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeerv.............lDtlkeErergiTiksaaisleketkkylinliDtPGHvdFske 86 
                 k+++n+++ighvD+GK+TL +++ly+tg+++++++++ ++++             lD +keEr +g T+++    +e  t+k++++++D+PGH+ F+ +
  KKY24392.1 275 KEHVNVIFIGHVDAGKSTLGGSILYATGMVDERTMDKYKREAkeagretwylswaLDLTKEERSKGKTVEVGRGFFE--TEKRRYSILDAPGHKTFVPN 371
                 689********************************9944222467899*****************************..******************** PP

                 HHHHHHT-SEEEEEEETTTB.......STHHHHHHHHHHHHTTTE.EEEEEESCGST.....HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEE CS
    GTP_EFTU  87 virglrvlDgavlvvdaveG.......vepqteevlrlalkegvp.iivfiNKmDrl.....kaelkeiveevkqklsrkeeklekygekgekevpvvf 172
                 +i g++++D+ vlv++a++G          qt+e++ la+++gv+ +i+++NKmD +     k++++e+  +++q        l+  g++ +++  +++
  KKY24392.1 372 MIGGASQADVGVLVISARKGeyetgfeKGGQTREHAMLAKTQGVNkLIIAVNKMDDPtvqwsKERFEECTVKLSQF-------LKGLGYNPKTDLMIMP 463
                 *************************9999****************************9999888999999998854.......58889999999***** PP

                 EBTTTTBTHH..............HHHHHH CS
    GTP_EFTU 173 gSalkgegvk..............tlleal 188
                 +Sa +  g+k              +lle+l
  KKY24392.1 464 ISAQTTLGIKdrvpkdvcpwydgpSLLEYL 493
                 *******99977777777777666555555 PP

>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0   0.0     2e-34     6e-31       2     111 ..     593     703 ..     592     704 .. 0.94

  Alignments for each domain:
  == domain 1  score: 107.0 bits;  conditional E-value: 2e-34
                  -EEECCEEEEEEESSS..SS-BSTT-EEEEESSS-EEEEEEEEEEECCSSTTSB-BSS-SSCCSTT-CEEEEEEE...CCEEEE--TTTHCCCCEEEE CS
  GTP_EFTU_D3   2 ikphtkfeAqvyilekerhtpitagYrpvlyirtadvtgkvveLlskldkktekvsekkpefvkpGdnvivevel...ikpialekgseypqlGrFai 96 
                  ++ +++feAq++ile   ++++ ag+++vl+i+ta +++++ +Ll+kl+k t+++s+k p f+ +G++vi+++ +   +  +++ek+++ypq+GrF++
   KKY24392.1 593 VHYVSSFEAQIVILEL--KSILSAGFNCVLHIHTAIEEVTFDALLHKLEKGTGRKSKKPPAFAAKGQTVIARLAItgaSGSVCVEKFEDYPQMGRFTL 688
                  677899**********..*****************************************************9986222578***************** PP

                  ECTTCEEEEEEEEEE CS
  GTP_EFTU_D3  97 ReggrTvaaGvvtei 111
                  R++g+T+a+G++t++
   KKY24392.1 689 RDQGQTIAIGKITKL 703
                  *************97 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.1   1.4e-10   4.1e-07       1      74 []     519     587 ..     519     587 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.4e-10
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETE.EESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhe.dedeavaganaGvivaikgledaiivGdtlt 74 
                  Gt + gr++ G++kkG++  +++n+  ++   + i++l+ ++e +   a +g+++ v +++++ ed i+ G +l+
   KKY24392.1 519 GTMIEGRIEAGVIKKGMNYLMMPNR--EE---VAITALYGEQEdEIPVASCGDQIRVRLRGIEEED-IMPGFVLC 587
                  8999*****************7764..67...*********99444666*****************.******98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   5.4e-06     0.016       1      92 [.     279     395 ..     279     424 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.4e-06
                 EEEEEESTTSSHHHHHHHHH...............T................STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinalt...............g................ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgk 68 
                 +v+++G+  +GKStL  +++               +                +  + ++ +g+T ++ +g ++++++++ ++D pG  +    +  + +
  KKY24392.1 279 NVIFIGHVDAGKSTLGGSILyatgmvdertmdkykReakeagretwylswalDLTKEERSKGKTVEVGRGFFETEKRRYSILDAPG--H----KTFVPN 371
                 589****************96666555555554440455555666666554346677888888888888888888899********..4....233555 PP

                 HHHHHHCTSEEEEEEETTTTCSHH CS
    MMR_HSR1  69 aflaleeadlillvvdaseeklkp 92 
                  +    +ad+ +lv++a++++++ 
  KKY24392.1 372 MIGGASQADVGVLVISARKGEYET 395
                 555566689999999988444433 PP

>> Mitofilin  Mitochondrial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  16.9    0.0008       2.4      59     200 ..      84     258 ..      74     281 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0008
   Mitofilin  59 e....klkeisklqvsavsevtkeskepkeekkkeks..........ekqssassevaeeeaeatkkaaeaka.......................qqp 120
                        +++ + q+ a +++++ +++  +++ ++            ++ s  + ++++++a+++ + ++a +                       + p
  KKY24392.1  84 YnqgyAGQQFNQGQYAAYNQAPGGFARQPQQQSQQARqapvsiakrpDADSASQAAAPSVPASTKAEPSPAPKakvlsiggdtgapkakvlsigvpTPP 182
                 24466789999999999999999886555555555446999999887444555666666666666666666667889********************** PP

   Mitofilin 121 kseqekekaleevlkealskaekataaakeakdeakkavkeavdklkeasdte..eksrekardtaleaaeaaaekeleklk 200
                 k+e++++ka+  + ++a +k+e+  +++  ak+ +k+  k+a++++k +  ++  + s + a++     ++aaa+++ + lk
  KKY24392.1 183 KAESSAKKAESTAESKADTKPEDGSKVT-AAKALEKTGEKAAASSGKTSPTPSsgKSSPTPAEK-----KAAAAREADAVLK 258
                 **********************988855.45555555555555555555533300333333333.....3333333222222 PP

>> SRP-alpha_N  Signal recognition particle, alpha subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  15.3    0.0083        25     113     240 ..     112     258 ..      67     271 .. 0.44
   2 ?   -0.5   0.0       0.3   9.1e+02      93     113 ..     630     650 ..     621     661 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0083
                  ......XXX..XXXXXXXXXX.....XX.XX..............XX.....XXXXX...X.........XXXXXXXXX.XXXXXXX.XXX.XXXXXX CS
  SRP-alpha_N 113 aakepkamksfeeskkskktvksskedkkpe...gkkkkgakkekda.....sddstpsat.........petsrpstp.sglltakeagptaedvsr 192
                  ++++++++++   s  ++   +s +++++p    + k +++ + k +     +d+++p+a+         p++++++++ + ++++k a+++ ed s+
   KKY24392.1 112 PQQQSQQARQAPVSIAKRPDADSASQAAAPSvpaSTKAEPSPAPKAKvlsigGDTGAPKAKvlsigvptpPKAESSAKKaESTAESK-ADTKPEDGSK 208
                  222222222222221111111222222222233333333333333337788756566666654444433211111111121122222.2222333333 PP

                  XXX.XXXXX..XXXXXXXXXXX....XXXXXXX...XXXXXXXXXXXXX.X CS
  SRP-alpha_N 193 rar.kkankkrssagassgdeakasksskkkkkkp.kkkgkkaRvWdad.g 240
                      k+++k+ ++a+assg+ ++ ++ss k++++p +kk++ aR  da  +
   KKY24392.1 209 VTAaKALEKTGEKAAASSGKTSP-TPSSGKSSPTPaEKKAAAAREADAVlK 258
                  33324444544445567777665.555555555551455555888887642 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.3
                  HHHHHHHHHXXXXXXXXX... CS
  SRP-alpha_N  93 yFdqllrelEasaeaakkska 113
                  +Fd+ll++lE+ + +++k+ +
   KKY24392.1 630 TFDALLHKLEKGTGRKSKKPP 650
                  8**********9986655443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.54
# Mc/sec: 3952.42
//
Query:       KKY24393.1  [L=674]
Description: putativebinding protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.1e-115  384.5   0.0   3.9e-115  384.1   0.0    1.1  1  Ran-binding  RanGTP-binding protein
  ------ inclusion threshold ------
      0.014   14.5   0.2      0.024   13.8   0.2    1.3  1  phiKZ_IP     phiKZ-like phage internal head proteins
      0.083   13.2   0.7       0.21   11.9   0.3    1.8  1  Rx_N         Rx N-terminal domain
        7.3    7.1   6.9         12    6.4   3.3    2.4  2  ZapB         Cell division protein ZapB


Domain annotation for each model (and alignments):
>> Ran-binding  RanGTP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  384.1   0.0  8.7e-119  3.9e-115      13     311 ..       1     335 [.       1     336 [. 0.96

  Alignments for each domain:
  == domain 1  score: 384.1 bits;  conditional E-value: 8.7e-119
  Ran-binding  13 vsfAirsGislassyaikqvsrllkkvpedkkerkeleklqkkLeskikiispaidLieliaarGntsLesaveLtksLkkeieelgerleeaaekee 110
                  +++AirsG+++++syai+q+srllk+v+ ++  r+el +l ++L+ski+i+spaid+i+liaarGntsLesav+Lt+sL+ ei++lg+rle+aa++ee
   KKY24393.1   1 MNYAIRSGVTITASYAIRQTSRLLKNVEGSQ--REELMSLLERLQSKIRILSPAIDMIDLIAARGNTSLESAVTLTRSLRFEIQALGQRLERAAAAEE 96 
                  89*************************9555..5***************************************************************9 PP

  Ran-binding 111 kskk....keeekeelkkviedikeLLkrieeaiPllnLalttsGaslstslpksvSpsrLLqAstflsaadtqfaadkskevqvGptFtlslYslFa 204
                  k+++    k +++ e+k++i++ik+LL+rie+a+P++nLa+ttsGaslst+lp++vSpsrLLqAstfl+a+dtq++ +++++vq+GptF lslY+lFa
   KKY24393.1  97 KARTntkvKIQNDVEIKSIINEIKKLLSRIEDAVPMINLAITTSGASLSTTLPSTVSPSRLLQASTFLTAGDTQYSLTPDRAVQIGPTFVLSLYMLFA 194
                  9888888888999************************************************************************************* PP

  Ran-binding 205 ghskekekeeeerkitWkEvlakarvkllrvpleal.....................akskkkeyaYeLeiiedldDgryHdeeee..kpkkle.... 275
                  g ++  +++e  r+++WkEv++karvkl rvp++ +                      +++++e+aY+L +iedldD+r+H+ ee+  +p++++    
   KKY24393.1 195 GYAR-PNDQEGLRDTAWKEVMHKARVKLRRVPMNLAftdptqgnppsaesyefghlpGEARTDEFAYQLLLIEDLDDDRVHTFEENqpQPEPYDdieq 291
                  **97.667778999*********************9********************98899***********************9967777777**** PP

  Ran-binding 276 .....sipikqisklfysasGklLnle...eenspvLllkrdkk 311
                       ++pi+qisklfy+++Gk+Ln++   e nspvLllkrd +
   KKY24393.1 292 pgireILPIHQISKLFYADTGKVLNIGsegEINSPVLLLKRDIN 335
                  ****9**********************99999*********987 PP

>> phiKZ_IP  phiKZ-like phage internal head proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   5.3e-06     0.024     240     278 ..      92     130 ..      16     135 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.3e-06
    phiKZ_IP 240 egeaedneeeitvevptaseikarlkelkellkrlgdvk 278
                   + e +  + +v++ +++eik++++e+k+ll+r++d+ 
  KKY24393.1  92 AAAEEKARTNTKVKIQNDVEIKSIINEIKKLLSRIEDAV 130
                 444444445599************************986 PP

>> Rx_N  Rx N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3   4.6e-05      0.21      12      78 ..      66     136 ..      48     150 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.6e-05
        Rx_N  12 llaeeakllkgvkeeleklkdeLesiqavLedaee....rqikdeavkeWlkelrdlaydaeDvlDefete 78 
                  l++ ++l ++++ e++ l ++Le+  a  e+a      + ++d ++k  ++e+++l   +eD++  +++ 
  KKY24393.1  66 SLESAVTLTRSLRFEIQALGQRLERAAAAEEKARTntkvKIQNDVEIKSIINEIKKLLSRIEDAVPMINLA 136
                 5677779**************************998775555899******************99877765 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1     0.095   4.3e+02       4      21 ..      37      57 ..      33      62 .. 0.73
   2 ?    6.4   3.3    0.0027        12      13      70 ..      67     127 ..      64     128 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.095
        ZapB  4 elLeqLEski...qkaidtit 21
                 lLe+L+ski   + aid+i+
  KKY24393.1 37 SLLERLQSKIrilSPAIDMID 57
                689******944445677776 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0027
        ZapB  13 iqkaidtitlLqmeieeLkeeneelkeenreleeeneqlk....eereawqerlkkLLgkle 70 
                  ++a++  ++L++ei++L ++ e  +  ++e  + n + k     e +++ + +kkLL ++e
  KKY24393.1  67 LESAVTLTRSLRFEIQALGQRLERAAA-AEEKARTNTKVKiqndVEIKSIINEIKKLLSRIE 127
                 6799999************99977766.6666667777766555777888889999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       891  (0.049696); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 4394.52
//
Query:       KKY24394.1  [L=411]
Description: putative fad dependent oxidoreductase superfamily [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.8e-34  117.8   0.0    9.2e-34  117.6   0.0    1.1  1  DAO          FAD dependent oxidoreductase
  ------ inclusion threshold ------
       0.07   12.4   0.0       0.16   11.2   0.0    1.5  1  Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.0     1e-37   9.2e-34      26     352 .]       2     349 ..       1     349 [. 0.78

  Alignments for each domain:
  == domain 1  score: 117.6 bits;  conditional E-value: 1e-37
                 EESSSSTTSSGGGSSEEEEESSS.........STHHSTH......HHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHHHHHHHHHHHHT CS
         DAO  26 lekgdiagsgaSgrnsgllhsgl.........rylpeas......elarlslealeelreleeelgididyrrtGllslaadeeelealdkllalllea 109
                 le++  ++sga+grn+g+l + l                      e+a + ++ +  ++e+ e+++i+ d+  t  + + ++ +   +l++ ++ l + 
  KKY24394.1   2 LEAR-GVCSGATGRNGGHLKPDLyrgiaslakQ-----YgseaaeEVAAFEAAHVPAIKEVIEKEDIEADLLVTRAIDVQFSGSYARQLKIGYDVLVSD 94 
                 7999.7777**********99995554444331.....0444444665666666677777777789999999999999998877888899999998556 PP

                 TTTE....EEEEHHHHHHHSTTSTTTSEE..EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEE.EE.TCEEEEEEECTEEEEEEEEEEE-- CS
         DAO 110 glda....elldaeevrelepalpgllga..lfypdtgqvdpakltaalaraaealGveilegtevtglee.ed.gkvwgverttpgendaadavVnaa 200
                 g+d+    +++ +e++ ++     g++ga   f++++g + p++++  l+++a + G ++ ++t vt+++e +d +k w++ + ++g++ +a++v+ a 
  KKY24394.1  95 GVDTaktvQYIPKEKASQVT----GVKGAeaAFTYTAGSIWPYRFITHLLSKAISMGLNLQTHTLVTSISEaQDaNKTWTI-NSERGSI-KAKTVIFAS 187
                 66333224778887555555....5565555899999********************************663558999***.5444775.4589***** PP

                 GGGHH.HHHTTCTTTSEEEEEEEEEEEE.EECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSE........EETTCSSTSCSHHHHHHHH CS
         DAO 201 Gawsd.llgllkeldlpispvrgqvlvl.kplseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtad........eesgdddpevdeedidell 289
                 +a+++ ll    e + +i+pvrg   ++  p ++++ +    +++  + +d  + y++pr+dg+++vGg           + ++ +d +v++   +++ 
  KKY24394.1 188 NAYTSaLL---AEYKNKIVPVRGFCSRIvTPGPNPPPHLSCTYTL--RFNDWEYDYLIPRPDGSIIVGGARKnylqtlsnWYDNVNDSTVPPSVNQYFD 281
                 ****9887...7778899*******88855655544333344444..55666778************998889******977777777*********** PP

                 HHHHHHSGG...GCG.EEEEEEEEEEE.TTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHHHH CS
         DAO 290 ealrklfPq...lgd.vlrkwaGlrpl.pdglpligetpgvkglylatGhsghGltlapatGkllael 352
                  +++++f +    g    r w+G++   +d lp ig +p+ ++ ++++G+ ghG+    +++k +a++
  KKY24394.1 282 GYMQRHFHGwetSGAyTDRVWSGIMGYsTDYLPHIGAVPHKPNQFILAGFTGHGMPEIFLSAKGIAQM 349
                 *******886433443669*******548********99899*****************999999986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.8e-05      0.16      93     140 ..     145     195 ..     132     204 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.8e-05
  Pyr_redox_3  93 sfelpiklfeeVesvkk...edegfevetsketyeAkkviiAtGefdkPnk 140
                  s  l+ ++++ V+s+++   ++++ ++++++++++Ak+vi A   +    +
   KKY24394.1 145 SMGLNLQTHTLVTSISEaqdANKTWTINSERGSIKAKTVIFASNAYTSALL 195
                  567999*********995333577******************988876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2648.27
//
Query:       KKY24395.1  [L=238]
Description: putative haloacid dehalogenase-like hydrolase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-09   38.9   0.0    2.2e-09   37.9   0.0    1.4  1  Hydrolase    haloacid dehalogenase-like hydrolase
    3.8e-05   23.8   0.0    5.3e-05   23.4   0.0    1.4  1  HAD_2        Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.015   15.4   0.0        5.6    7.1   0.0    2.4  2  Hydrolase_6  Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   3.8e-13   2.2e-09       2     188 ..       4     177 ..       3     186 .. 0.74

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 3.8e-13
                 SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTE........HHHHTHHHHHHHHHCHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrg........ayaigkpewltaldippdlgaaigs 92 
                 k vvfD+ GTL+ g   ++d+i++                 g +l ++  + s+ +  + ++++r         +ya+ +  + +    +  l  a  s
  KKY24395.1   4 KNVVFDIVGTLI-GYDKITDAIEKT---------------MGDKLRKEGVKPSFVTYAWIEVAEREytylsmsgRYAKFSSVFEQVF--YRILYGAGIS 84 
                 679*********.999999999999...............88888777777766666666666666655333335555554444444..4444444444 PP

                 HHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  93 aqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqg 188
                   ++         ++  + +   +l+ +p+aae+v +L++ag+ v+ lt  + + ++      G +   ++ ++ d+++++kp+p++++ + ++L++
  KKY24395.1  85 NPREIANIQ----DLEYIMKEYAQLEARPGAAECVTKLREAGFTVWALTAADINRVNQYFASSGiKMPAENLVSCDTKGIGKPDPRAYQSVFEQLKE 177
                 444444433....4455555556667*******************************8888889555559999999999****************83 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   8.8e-09   5.3e-05      60     149 ..      85     176 ..       6     200 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 8.8e-09
       HAD_2  60 e.....kieellrkyneekkkkevkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklk 149
                 +     +i++l  +y  +++  +++  +g+ e + +L+eag+++   T  + + v++ ++  gi+   +  v+ ++ +  KPdp+ ++ + e+lk
  KKY24395.1  85 NpreiaNIQDL--EYIMKEYA-QLEARPGAAECVTKLREAGFTVWALTAADINRVNQYFASSGIKMPAENLVSCDTKGIGKPDPRAYQSVFEQLK 176
                 13333478888..44444555.69********************************************************************997 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0022        13       1      37 [.       6      43 ..       6      55 .. 0.90
   2 ?    7.1   0.0   0.00094       5.6      14      47 ..     106     139 ..     102     157 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0022
                 EEEESTTTSEETTEE-TTHHHHH.HHHHHTT-EEEEEE CS
  Hydrolase_6  1 flfDidGvLwrgdkaipgaaeal.nalraagkpvvllT 37
                 ++fDi G+L+  dk+ +  ++++ + lr++g++  ++T
   KKY24395.1  6 VVFDIVGTLIGYDKITDAIEKTMgDKLRKEGVKPSFVT 43
                 69************999999988468999999999998 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00094
                  EE-TTHHHHHHHHHHTT-EEEEEE---SS-HHHH CS
  Hydrolase_6  14 kaipgaaealnalraagkpvvllTNnsskseeey 47 
                  +a pgaae+++ lr+ag +v+ lT    +  ++y
   KKY24395.1 106 EARPGAAECVTKLREAGFTVWALTAADINRVNQY 139
                  5679*******************98876665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1455.04
//
Query:       KKY24396.1  [L=561]
Description: putative amino acid transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-98  329.0  39.2    5.3e-98  328.7  39.2    1.0  1  AA_permease    Amino acid permease
    1.3e-29  103.3  41.3    1.5e-29  103.1  41.3    1.0  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.7  39.2  5.9e-102   5.3e-98       2     475 ..      59     516 ..      58     519 .. 0.96

  Alignments for each domain:
  == domain 1  score: 328.7 bits;  conditional E-value: 5.9e-102
  AA_permease   2 vlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasi 99 
                  +++++ g  iGtgl++g+g +l  aGp+g+ +ay ++ +++fl  +s+ge+  ++p++ggf   a+++++p+++f+ G+n++f w++ +++e+taa++
   KKY24396.1  59 IMMMTFGAGIGTGLWIGTGTALKYAGPGGIAVAYTIVSIIVFLQYMSIGELTAYKPVHGGFIRQAHEYVDPACAFAEGINFWFEWVMIIPAEITAAIS 156
                  79************************************************************************************************ PP

  AA_permease 100 liqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga..gfrflgdngsifknnlppgfakeee 195
                  +++fw  ++++  + +++++fl+v++++n++ vk+yg +e++++++ki ai  +i +++i+ +gg p+ +    f++++ ng+     + +g      
   KKY24396.1 157 VLKFWPQTEAVQ-TAGYITIFLTVIVFVNVFPVKFYGTVEYCMSFVKIGAIFVMIFFLFIMASGGIPATHGplVFHYWKTNGA-----FKNG------ 242
                  *****5555555.*********************************************99998888766555***********.....****...... PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplin 293
                    +k+++ +f+++ f+f G e +aiiagE++dP+++i+k i+ +++r + f++l + l+g++ p++d  l+n++ +  spfvi+i+ ++   la++in
   KKY24396.1 243 --MKGIAKAFIQAGFSFGGAEHIAIIAGEARDPRRTIKKTIMPIFWRMFSFFILNIWLVGMCTPDDDERLINGTGTLGSPFVIAIERANAMWLAHIIN 338
                  ..**************************************************************************9********************* PP

  AA_permease 294 aviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfR 391
                   +i+++++s+++ s+y+asR l +l++ +l+  ++++ + rg+P++++ ++++++  +    + n  a++v+ +++a++a+++l  w +i+l+++ fR
   KKY24396.1 339 GFIFLTVISCGITSVYIASRSLSALSDIKLIHPFFGNKDSRGRPYVSLSITCVLGGGLC-YLNCNDTAAVVYSWFSALVAISALCQWAVIYLTHIQFR 435
                  *******************************9999999999************987655.344444446***************************** PP

  AA_permease 392 kalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkrp 475
                  + lk+qg++++ l+f a+++p+  +l+l+++ +i+   ++  + ++++ p   +aa f+++yl v+lf+  ++++k+++k+k+ 
   KKY24396.1 436 RGLKAQGIDYKTLPFVAPFAPYAQYLGLVIVFFIFGCEFYLSVWPFGERP---SAAGFFSSYLAVPLFIFDYFAYKIYYKTKIV 516
                  *********************************************99999...99*************************9985 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1  41.3   1.7e-33   1.5e-29       4     422 ..      57     500 ..      54     502 .. 0.78

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 1.7e-33
  AA_permease_2   4 lsafalvigsvigsgifvkn....laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasi 95 
                    ++  ++++g+ ig+g  + +     +a +g +++ + +++++++   +   + El++ +p  gG +  +++   +  af  ++ +wf +v  +++ 
     KKY24396.1  57 RQIMMMTFGAGIGTGLWIGTgtalKYAGPGGIAVAYTIVSIIVF--LQYMSIGELTAYKPVHGGFIRQAHEYVDPACAFAEGINFWFEWVMIIPAE 150
                    56778888888777766655555558889999999999988887..69999****777*********************************99998 PP

  AA_permease_2  96 lsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl......stetdt..ff 183
                    +++a+s l + + p+  ++ ++t + + ++l++++++n++ +k ++++  ++  +ki + ++++i + +i+++gg+   +       ++  t   f
     KKY24396.1 151 ITAAISVLKF-W-PQ--TEAVQTAGYITIFLTVIVFVNVFPVKFYGTVEYCMSFVKI-GAIFVMIFFLFIMASGGIPATHgplvfhYWK--TngAF 239
                    8887777666.6.54..578899**********************************.799***********99988777866644333..33477 PP

  AA_permease_2 184 pngwpgvllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddei...anlsnlgsvaalffeavggkvvai 274
                    +ng +g++ ++ ++ +sf+G e +a ++ e++   ++++k+i+ ++   + +++l   ++ ++ pdd     + +++lgs++ +  e++++ ++a+
     KKY24396.1 240 KNGMKGIAKAFIQAGFSFGGAEHIAIIAGEARDprRTIKKTIMPIFWRMFSFFILNIWLVGMCTPDDDErliNGTGTLGSPFVIAIERANAMWLAH 335
                    778888999*********************66553789999988888888888888888999****88634455566888899999999999**** PP

  AA_permease_2 275 ivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas....saaynfllsvsslgliisyllli 366
                    i++ +i+l ++ +++t v+++sr l al+  + +  ff + + +g+p++++ +t+++    + l++l+     +  y++ +++ ++++++ ++++ 
     KKY24396.1 336 IINGFIFLTVISCGITSVYIASRSLSALSDIKLIHPFFGNKDSRGRPYVSLSITCVLG---GGLCYLNCndtaAVVYSWFSALVAISALCQWAVIY 428
                    *********************************************************9...45555433234456666777777777777777777 PP

  AA_permease_2 367 igalilrkkrphl....kr........pgk....ilvaiigalfllfllvalffppkgpatqssliytiilt 422
                    ++ +  r+  + +    k+        p++     +++++++ + ++l v++f     +a  +s+++++ l+
     KKY24396.1 429 LTHIQFRRGLKAQgidyKTlpfvapfaPYAqylgLVIVFFIFGCEFYLSVWPFGERPSAAGFFSSYLAVPLF 500
                    666666666664443323376665444222554455666666666666688887665555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3716.88
//
Query:       KKY24397.1  [L=1085]
Description: putative importin beta-4 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-23   83.3  10.7    2.2e-10   40.8   0.2    8.2  7  HEAT_EZ        HEAT-like repeat
    8.9e-21   72.2   6.2    0.00012   22.1   0.2    9.1  8  HEAT           HEAT repeat
    6.3e-15   55.3  12.7    0.00049   20.4   0.1    7.1  6  HEAT_2         HEAT repeats
    1.8e-11   44.5   0.2      0.089   13.4   0.0    6.5  6  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
    6.9e-10   39.2   1.1      0.001   19.1   0.0    4.6  5  Cnd1           non-SMC mitotic condensation complex subunit 1
    2.3e-08   33.1   0.2     0.0069   15.0   0.0    3.9  5  Adaptin_N      Adaptin N terminal region
    1.9e-07   30.5   6.2        0.5    9.4   0.1    4.8  4  IFRD           Interferon-related developmental regulator (IF
    5.8e-07   29.3   0.8       0.58   10.3   0.0    5.3  4  Arm            Armadillo/beta-catenin-like repeat
    1.2e-06   28.3   1.1    3.3e-06   26.9   0.2    2.4  1  IBN_N          Importin-beta N-terminal domain
      2e-06   28.0   0.2        1.7    8.9   0.0    4.8  4  RTP1_C1        Required for nuclear transport of RNA pol II C
    6.9e-05   22.1   4.6       0.05   12.7   0.0    4.5  5  MMS19_C        RNAPII transcription regulator C-terminal
    7.7e-05   22.4   0.0      0.048   13.2   0.0    3.2  2  CLASP_N        CLASP N terminal
    0.00021   20.9   0.0       0.14   11.6   0.0    3.9  3  Tti2           Tti2 family
     0.0038   16.5   2.5        1.7    7.8   0.0    2.9  3  DUF3535        Domain of unknown function (DUF3535)
     0.0038   16.6   1.0        9.6    5.4   0.0    4.3  5  V-ATPase_H_N   V-ATPase subunit H
  ------ inclusion threshold ------
      0.048   14.0   0.9       0.92    9.9   0.2    3.0  3  Cohesin_HEAT   HEAT repeat associated with sister chromatid c
        0.1   12.6   0.5         25    4.8   0.0    4.1  5  DUF1804        Protein of unknown function (DUF1804)
       0.17   11.5   1.1        8.8    6.0   0.0    4.0  5  DUF4042        Domain of unknown function (DUF4042)


Domain annotation for each model (and alignments):
>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.33   3.3e+02      31      55 .]      83     108 ..      72     108 .. 0.81
   2 ?    2.8   0.0      0.17   1.7e+02      28      55 .]     161     189 ..     146     189 .. 0.89
   3 !   40.8   0.2   2.2e-13   2.2e-10       1      55 []     357     411 ..     357     411 .. 0.96
   4 !   10.2   0.1   0.00084      0.83       3      35 ..     400     432 ..     400     435 .. 0.90
   5 !   19.6   0.0     1e-06     0.001      13      55 .]     462     505 ..     455     505 .. 0.87
   6 ?   -0.1   0.0       1.4   1.4e+03       3      31 ..     539     568 ..     538     575 .. 0.82
   7 !   15.3   0.2   2.2e-05     0.022       4      55 .]     903     954 ..     900     954 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.33
     HEAT_EZ  31 paLlalLnddsd.eVRaaAagaLgnl 55 
                  +Ll+  +++++ +VR a+ + ++++
  KKY24397.1  83 TQLLQSTMHEPAsLVRHASSRLISAI 108
                 7899999**999899******99986 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.17
     HEAT_EZ  28 eilpaLlalLnddsd.eVRaaAagaLgnl 55 
                 ++  +++++ +d+++ eVR ++  +L+++
  KKY24397.1 161 DLFTLFGRTIQDPESaEVRINTMLCLSKI 189
                 6778899999**9999**********987 PP

  == domain 3  score: 40.8 bits;  conditional E-value: 2.2e-13
     HEAT_EZ   1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 +  Rra+++aLG + +g+p+ ++++v++i+p  l+lL d++++VR+aA+ a ++l
  KKY24397.1 357 PSYRRAGILALGMVVEGAPDFISTQVKDIMPIVLRLLDDSDAKVRGAALQAVARL 411
                 578***********************************************98876 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00084
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLla 35 
                 vR aA+ a++rla   pe+l +++++++p L +
  KKY24397.1 400 VRGAALQAVARLADDVPEDLGKEHEKLMPMLFK 432
                 7889999**********************9975 PP

  == domain 5  score: 19.6 bits;  conditional E-value: 1e-06
     HEAT_EZ  13 r.laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 + + g+ +++  p++++++p+L +l ++++ ++++ AagaLg l
  KKY24397.1 462 AvVDGMDADDATPYLERLVPLLSKLFKHPDLKIKGLAAGALGSL 505
                 456778899999******************************86 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 1.4
     HEAT_EZ   3 vRraAawaLGr.laggepellqplvpeilp 31 
                 +R+++  a+G+ + + +pe  q +v+ ++ 
  KKY24397.1 539 LRASVTDAMGEmAVAAGPEKFQHYVKPLMQ 568
                 67888889***9666899999999999986 PP

  == domain 7  score: 15.3 bits;  conditional E-value: 2.2e-05
     HEAT_EZ   4 RraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 R+ A+ +L+++  g +++++ l  ++l +Ll++L d+++ V+ +Aa+a+g+l
  KKY24397.1 903 RATAVGVLAEVITGMGDAVSSLTGKLLTLLLKRLGDEDAQVKSNAAYAIGRL 954
                 5566666666555666677777778999999*******************97 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.13   1.3e+02       4      29 ..      85     110 ..      83     111 .. 0.85
   2 ?    3.8   0.0     0.086        86       9      28 ..     170     190 ..     162     192 .. 0.84
   3 ?    3.1   0.0      0.15   1.4e+02       9      30 ..     352     373 ..     344     374 .. 0.84
   4 !   22.1   0.2   1.2e-07   0.00012       1      29 [.     385     413 ..     385     415 .. 0.95
   5 !    9.8   0.0   0.00099      0.99       1      30 [.     479     508 ..     479     509 .. 0.95
   6 ?   -2.4   0.0       8.3   8.2e+03      18      29 ..     691     702 ..     690     703 .. 0.84
   7 ?    2.5   0.0      0.22   2.2e+02       4      25 ..     718     739 ..     716     744 .. 0.87
   8 !   20.2   0.0   4.7e-07   0.00047       1      30 [.     928     957 ..     928     958 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.13
                 HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgalae 29 
                 ll++ ++ p++ VR a+ + + a+a 
  KKY24397.1  85 LLQSTMHEPASLVRHASSRLISAIAN 110
                 56666788***************996 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.086
                 HT-.SSHHHHHHHHHHHHHHH CS
        HEAT   9 lsD.pspeVReaAakaLgala 28 
                 ++D +s+eVR ++ ++L ++a
  KKY24397.1 170 IQDpESAEVRINTMLCLSKIA 190
                 57867888**********997 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.15
                 HT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   9 lsDpspeVReaAakaLgalaev 30 
                  s+++p+ R+a ++aLg ++e+
  KKY24397.1 352 SSHQDPSYRRAGILALGMVVEG 373
                 5899*************99986 PP

  == domain 4  score: 22.1 bits;  conditional E-value: 1.2e-07
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 ++P++l+ll D++++VR aA++a+++la 
  KKY24397.1 385 IMPIVLRLLDDSDAKVRGAALQAVARLAD 413
                 8*************************996 PP

  == domain 5  score: 9.8 bits;  conditional E-value: 0.00099
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 l+Pll kl ++p+ ++   Aa aLg la+ 
  KKY24397.1 479 LVPLLSKLFKHPDLKIKGLAAGALGSLAST 508
                 79*************************985 PP

  == domain 6  score: -2.4 bits;  conditional E-value: 8.3
                 HHHHHHHHHHHH CS
        HEAT  18 eaAakaLgalae 29 
                 e A++ Lg++++
  KKY24397.1 691 EIAVEVLGDILS 702
                 679*******87 PP

  == domain 7  score: 2.5 bits;  conditional E-value: 0.22
                 HHHHHHT-SSHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLg 25 
                  +l l++++   VR+a++ +L 
  KKY24397.1 718 NILPLCEHNYEGVRKATISTLH 739
                 589999999999******9996 PP

  == domain 8  score: 20.2 bits;  conditional E-value: 4.7e-07
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 ll lllk l D++++V ++Aa+a+g+l+e+
  KKY24397.1 928 LLTLLLKRLGDEDAQVKSNAAYAIGRLVEK 957
                 7899***********************985 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.8     0.021        21       4      84 ..      42     139 ..      39     141 .. 0.74
   2 ?    0.8   0.0      0.67   6.6e+02      40      60 ..     170     196 ..     161     228 .. 0.64
   3 !   20.4   0.1     5e-07   0.00049       6      60 ..     349     413 ..     341     421 .. 0.81
   4 !   11.2   0.1   0.00038      0.37       3      65 ..     481     561 ..     467     574 .. 0.70
   5 ?    3.3   0.0      0.11   1.1e+02      20      55 ..     693     738 ..     687     752 .. 0.80
   6 !   14.9   0.1   2.7e-05     0.027       5      59 ..     892     957 ..     888    1014 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.021
      HEAT_2   4 Llqalendpdpevrr.aairaLg.....rignpea......lpaLvellededpavRraaaeaLgaig....dpealpaLkelldddd.ddvvReaAa 84 
                 L+ +++++++ ++++ aa++        ++++pea       ++L + +  + + vR+a  + ++ai+    +++ +p L +ll++ + +++v e+A+
  KKY24397.1  42 LIHIVVSHENAQLKQlAAVEGRSlvsklWLKTPEAqrpqvrTQLLQSTMHEPASLVRHASSRLISAIAnvdlEDAQWPELPQLLLQAStSSRVEERAV 139
                 889999999999998577766667799977888777666666667777799999*******9999987443335678999997755442677777775 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.67
      HEAT_2  40 led.edpavRraaaeaLgaig.....d 60 
                 ++d e+++vR +    L++i+     d
  KKY24397.1 170 IQDpESAEVRINTMLCLSKIAmaldsD 196
                 455344677777777777764333222 PP

  == domain 3  score: 20.4 bits;  conditional E-value: 5e-07
      HEAT_2   6 qalendpdpevrraairaLg..........rignpealpaLvellededpavRraaaeaLgaigd 60 
                  + +++ dp  rra i aLg          + + ++++p++++ll+d+d+ vR aa +a ++++d
  KKY24397.1 349 PRFSSHQDPSYRRAGILALGmvvegapdfiSTQVKDIMPIVLRLLDDSDAKVRGAALQAVARLAD 413
                 4456799*************99888886554455599***********************99986 PP

  == domain 4  score: 11.2 bits;  conditional E-value: 0.00038
      HEAT_2   3 aLlqalendpdpevrraairaLgrignp..........ealpaLvell...ed.edpavRraaaeaLgai....gdpealp 65 
                 +Ll+ l ++pd +++  a+ aLg+++++          ++++aL e++   e+ e+ + R+ + +a+g++    g +++  
  KKY24397.1 481 PLLSKLFKHPDLKIKGLAAGALGSLASTvesaflpyleDSMNALQEFAtkkESqEELDLRASVTDAMGEMavaaGPEKFQH 561
                 566666689999999999999998888777778888888888888888642122335688888888888733333455555 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.11
      HEAT_2  20 airaLgrignp..........ealpaLvellededpavRraaaeaL 55 
                 a+++Lg+i +           ++++ +++l+e+  + vR+a + +L
  KKY24397.1 693 AVEVLGDILSNtksaflpyfeKTVENILPLCEHNYEGVRKATISTL 738
                 78888866433355677777788*******************9998 PP

  == domain 6  score: 14.9 bits;  conditional E-value: 2.7e-05
      HEAT_2   5 lqalendpdpevrraairaLg....rignp......ealpaLvellededpavRraaaeaLgai..g 59 
                 l+++ ++++   r++a+ +L+     +g+       ++l +L++ l ded+ v  +aa a+g++  +
  KKY24397.1 892 LKYA-SSSESLERATAVGVLAevitGMGDAvssltgKLLTLLLKRLGDEDAQVKSNAAYAIGRLveK 957
                 5666.56666777777777776655444445555557788888888888888888888888876331 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.62   6.2e+02      48      82 ..     141     175 ..     120     181 .. 0.83
   2 ?    2.0   0.1      0.31   3.1e+02       3      39 ..     179     219 ..     177     275 .. 0.68
   3 !   13.4   0.0   8.9e-05     0.089       2      52 ..     359     409 ..     358     439 .. 0.84
   4 !    8.1   0.0    0.0041       4.1       5      79 ..     455     530 ..     452     541 .. 0.88
   5 ?    1.8   0.0      0.36   3.6e+02      47      88 ..     693     734 ..     690     743 .. 0.88
   6 !    8.1   0.0     0.004         4      13      89 ..     872     948 ..     864     979 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.62
  Vac14_Fab1_bd  48 cEslyniakvakgevlkllneifdalvklvaDsde 82 
                    +  l+ +  ++ + + +++n++f+ + + + D ++
     KKY24397.1 141 TYILFSVLETMAEGFTEKFNDLFTLFGRTIQDPES 175
                    557999999999****************9999874 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.31
  Vac14_Fab1_bd   3 rkggligLaavaialekk....ikeyleeivkpvlkcfsDk 39 
                    r  +++ L  +a+al+++    +   ++e+ ++++k+++D+
     KKY24397.1 179 RINTMLCLSKIAMALDSDedatSVATFQELFPSMVKVLQDS 219
                    66778899999999998878766667888999999999985 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 8.9e-05
  Vac14_Fab1_bd   2 arkggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEsly 52 
                    +r++g+++L  v  +    i++ +++i+++vl+ ++D+d++vR  a  ++ 
     KKY24397.1 359 YRRAGILALGMVVEGAPDFISTQVKDIMPIVLRLLDDSDAKVRGAALQAVA 409
                    6899999999999999999************************88877665 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.0041
  Vac14_Fab1_bd   5 ggligLaavaialekk.ikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaD 79 
                     g  ++ av  +++++ +++yle++v+ + k f+  d +++  a+ +l  +a ++++++l +l++  +al + ++ 
     KKY24397.1 455 SGTSAIDAVVDGMDADdATPYLERLVPLLSKLFKHPDLKIKGLAAGALGSLASTVESAFLPYLEDSMNALQEFATK 530
                    5667777777788877799**********************************************99999887765 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.36
  Vac14_Fab1_bd  47 acEslyniakvakgevlkllneifdalvklvaDsdesvksga 88 
                    a+E l  i   +k+++l ++++  + +  l+  + e v++++
     KKY24397.1 693 AVEVLGDILSNTKSAFLPYFEKTVENILPLCEHNYEGVRKAT 734
                    789999999*******************99999999999875 PP

  == domain 6  score: 8.1 bits;  conditional E-value: 0.004
  Vac14_Fab1_bd  13 vaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksgae 89 
                    +a+al+ +  e  + + k+vlk+ s ++s  R +a+  l  ++  + ++v +l  ++++ l k + D+d++vks a+
     KKY24397.1 872 LAVALGPSFGELWKIFEKSVLKYASSSESLERATAVGVLAEVITGMGDAVSSLTGKLLTLLLKRLGDEDAQVKSNAA 948
                    66777777777777777777777777777777777777777777777777777777777777777777777776543 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1    0.0032       3.2      27     127 ..     167     282 ..     147     293 .. 0.71
   2 !    7.2   0.0    0.0048       4.7      20      58 ..     383     424 ..     330     455 .. 0.74
   3 ?   -2.7   0.0       5.2   5.2e+03      61     106 ..     481     526 ..     476     539 .. 0.73
   4 ?   -3.3   0.0       8.2   8.1e+03      69     103 ..     790     834 ..     780     845 .. 0.49
   5 !   19.1   0.0   1.1e-06     0.001      15     146 ..     921    1058 ..     903    1068 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0032
        Cnd1  27 rkrLkDe.dpyVRktaaivvakL.....ilnd...mvkekgflselaklleDe.....nprVvanalaalteiseksenaiynllpdiisklsd..aln 109
                  ++++D+ ++ VR +++++++k+      ++d   +   ++++  + k l+D+     ++r+++ a  +++ ++  + ++i + + ++i+ +++    +
  KKY24397.1 167 GRTIQDPeSAEVRINTMLCLSKIamaldSDEDatsVATFQELFPSMVKVLQDSigsgdEDRIMQ-AFEVFQTVLGCDFQLIAKHFGNLIKLMNQisTNT 264
                 57778852678***********998855444433223344489999999999744442456665.5556777777777788777766666666543446 PP

        Cnd1 110 ecsewgqitilefLlsyi 127
                 ++ e+++++ ++fL+s +
  KKY24397.1 265 DMAEDTRVQAISFLMSAV 282
                 699999999999999865 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0048
        Cnd1  20 eylvepLrkrLkDedpyVRktaaivvakL...ilndmvkekg 58 
                   +++ + + L D+d+ VR  a+ +va+L   + +d+ ke +
  KKY24397.1 383 KDIMPIVLRLLDDSDAKVRGAALQAVARLaddVPEDLGKEHE 424
                 444555566777778888888888877776666666655554 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5.2
        Cnd1  61 selaklleDenprVvanalaalteiseksenaiynllpdiisklsd 106
                   l kl + ++ ++  +a  al  +++  e+a++  l d+++ l++
  KKY24397.1 481 PLLSKLFKHPDLKIKGLAAGALGSLASTVESAFLPYLEDSMNALQE 526
                 5677778888888888888888888888778888888888888874 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 8.2
        Cnd1  69 DenprVvanalaalteisek.se.........naiynllpdiisk 103
                 +++++ v+ +  +++e ++  ++         ++++n++++ii +
  KKY24397.1 790 EDDRQTVSECSRSFSETLKVaGPalisepgaiEKVVNIVIQIITQ 834
                 455555555666666666663333444333333334444444433 PP

  == domain 5  score: 19.1 bits;  conditional E-value: 1.1e-06
        Cnd1   15 vpnlveylvepLrkrLkDedpyVRktaaivvakL.....ilndmvkekg.flselaklleDenprVvanalaalteiseksena..iynllpdiisk 103 
                  v++l+ +l++ L krL Ded++V+ +aa+++ +L      + +++k    +ls+l+ ll  +++r ++na  + + +  k+++a  +  +lp ++++
  KKY24397.1  921 VSSLTGKLLTLLLKRLGDEDAQVKSNAAYAIGRLveksnATSETFKAYPtILSKLEGLLGTQEARCMDNAAGCVSRLILKNKDAvpTTDVLPVLVNN 1017
                  5667777888888999999999999999999999776665555677766788999999999999999999999998888855541146666777777 PP

        Cnd1  104 lsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlq 146 
                  ++    + + ++   ++++++++ + ++ ++ +l+ +l+p +q
  KKY24397.1 1018 VLPL--KQDYQENEPVYNMIVQMYKWEDPTIRNLTPQLIPIFQ 1058
                  7743..4444455566777777666666667777777777776 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.35   3.5e+02     140     182 ..      68     110 ..      39     230 .. 0.63
   2 !   12.3   0.0   4.6e-05     0.046     115     200 ..     344     437 ..     333     493 .. 0.68
   3 ?   -2.3   0.0       1.2   1.2e+03     341     384 ..     521     568 ..     516     573 .. 0.80
   4 ?   -3.7   0.0       3.3   3.3e+03     379     426 ..     694     746 ..     689     751 .. 0.62
   5 !   15.0   0.0   6.9e-06    0.0069      88     196 ..     895    1017 ..     883    1055 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.35
                 HCCCCCHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHHHCC CS
   Adaptin_N 140 klykkdpdllrkq.lveeikellsdkdpgvvlaAvalleeikkn 182
                 kl  k+p+++r+q  ++ +++ +++   +v  a   l+  i  n
  KKY24397.1  68 KLWLKTPEAQRPQvRTQLLQSTMHEPASLVRHASSRLISAI-AN 110
                 44444666666665566666666666666666666665555.22 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 4.6e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC.H..HHHHHHCTT-SSHHHHHHHHHHHHHH..HCCCCCCC...HHHHHHHCCHHHH CS
   Adaptin_N 115 lapaikkllkdrspyvrkkAalailklykkdpdllrkq.l..veeikellsdkdpgvvlaAvalleei..kkndrlll...kllpklvrrLcnl 200
                 l++a+ +  ++++p+ r++ +la+  +++  pd ++ q    ++ +  ll+d+d +v +aA+++  ++  + +++l +   kl+p l+++L+ +
  KKY24397.1 344 LLHALPRFSSHQDPSYRRAGILALGMVVEGAPDFISTQvKdiMPIVLRLLDDSDAKVRGAALQAVARLadDVPEDLGKeheKLMPMLFKNLTAA 437
                 5666666667777777777777777777777776665521225555666677777777777777777765444444335567777777777655 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.2
                 HHHHHHHT..TSSXXHH...HHHHHHHHHHHHHHHS.CCHHHHHHHHHHH CS
   Adaptin_N 341 vkeLkkyv..kevaded...fksklvkaIgrlaekf.atdaewvldvlle 384
                 ++ L++++  ke++  +   +++ + +a g++a++  +++++++++ l++
  KKY24397.1 521 MNALQEFAtkKESQ--EeldLRASVTDAMGEMAVAAgPEKFQHYVKPLMQ 568
                 67899999443332..2457**************99999*****999987 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 3.3
                 HHHHHHHHTTXXHHH...HHHHHHHHHHHHH.HSTTTSTTCHHHHCCTCCG.X CS
   Adaptin_N 379 ldvllellslsgesv...kdeivevirdliq.kvpelheeiiekLaellek.i 426
                 ++vl ++ls++ + +    ++ ve+i+ l + +++ +++ +i++L +++ + +
  KKY24397.1 694 VEVLGDILSNTKSAFlpyFEKTVENILPLCEhNYEGVRKATISTLHRAYATlC 746
                 56677777777666666667777777777751456677777777766665544 PP

  == domain 5  score: 15.0 bits;  conditional E-value: 6.9e-06
                  CCSSSHHHHHHHHHHHCCC-......-CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC.HHHHHHHCT....T-SSHHHHHHHH CS
   Adaptin_N   88 lkdpnqlirglALrvLssir......vpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkq.lveeikell....sdkdpgvvlaAv 173 
                  ++++++l r+ A+ vL+ ++      v++l+ +l++ + k l d++++v+++Aa+ai +l++k+    + +   + i ++l      ++ +++ +A 
  KKY24397.1  895 ASSSESLERATAVGVLAEVItgmgdaVSSLTGKLLTLLLKRLGDEDAQVKSNAAYAIGRLVEKSNATSETFkAYPTILSKLegllGTQEARCMDNAA 991 
                  68999**************989999999***********************************7777666655555555553332777888888888 PP

                  HHHHHH..HCCCCCCC.HHHHHHHCC CS
   Adaptin_N  174 alleei..kkndrlll.kllpklvrr 196 
                      ++  k +d   + ++lp lv++
  KKY24397.1  992 GCVSRLilKNKDAVPTtDVLPVLVNN 1017
                  88888874433333336777777776 PP

>> IFRD  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1   0.00051       0.5      86     167 ..     125     201 ..     113     227 .. 0.69
   2 !    5.8   0.1    0.0063       6.3     216     251 ..     378     413 ..     205     441 .. 0.75
   3 !    6.2   0.0    0.0049       4.9     119     194 ..     473     544 ..     457     569 .. 0.81
   4 !    8.2   0.1    0.0012       1.2     171     261 ..     883     966 ..     874     989 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00051
        IFRD  86 lekslkkgkseEqalAlkalallcitlgagdeseeileelkpvLkriikdssvslsakaaaieaLglltfvggadeeeieel 167
                 l+++  +++ eE+a+ + +l  ++ t+ +     e +++l++++ r+i+d + s++++ + + +L+ +++  ++de+++  +
  KKY24397.1 125 LLQASTSSRVEERAVGTYILFSVLETMAE--GFTEKFNDLFTLFGRTIQDPE-SAEVRINTMLCLSKIAMALDSDEDAT--S 201
                 55555555556666665555555445333..34468999*************.*************8888777775443..2 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0063
        IFRD 216 leedleealealvelLdssdvevriAAGeaiALlfE 251
                  +++++++++ +  lLd+sd +vr AA +a+A l +
  KKY24397.1 378 ISTQVKDIMPIVLRLLDDSDAKVRGAALQAVARLAD 413
                 344446789999999999999999999999987766 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0049
        IFRD 119 eeileelkpvLkriikdssvslsakaaaieaLg.lltfvggadeeeieelmeflleifssdgqsieaadsaskalvt 194
                   +le+l+p+L+++ k  +  l++k  a+ aLg l++ v +a    +e++m+ l+e  +++  ++e    as   vt
  KKY24397.1 473 TPYLERLVPLLSKLFKHPD--LKIKGLAAGALGsLASTVESAFLPYLEDSMNALQEFATKKESQEELDLRAS---VT 544
                 33899999****9999999..999********98899999999************99999988776554444...33 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0012
        IFRD 171 lleifssdgqsieaadsaskalvtaalsawglLltllpssklnkkleedleealealvelLdssdvevriAAGeaiALlfElsreedeefe 261
                 l++if+++  + ++++++     + a+  ++ + t +  +++ ++l     ++l  l + L ++d +v+  A  ai+ l E+s+  +e f+
  KKY24397.1 883 LWKIFEKSVLKYASSSESL--ERATAVGVLAEVITGM--GDAVSSLTG---KLLTLLLKRLGDEDAQVKSNAAYAIGRLVEKSNATSETFK 966
                 5666666666555443333..3444455555555555..444444444...3466666666677777777777777777777766655555 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0      0.01        10       5      40 ..     378     412 ..     375     413 .. 0.85
   2 !   10.3   0.0   0.00058      0.58      14      41 .]     480     507 ..     477     507 .. 0.92
   3 ?    5.2   0.0     0.023        22      17      39 ..     932     954 ..     927     956 .. 0.77
   4 ?    0.6   0.0      0.65   6.5e+02       3      31 ..    1000    1028 ..    1000    1028 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.01
                 HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   5 kdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 + + ++  ++p+ +rLL++ d +v+ +A+ A++ La
  KKY24397.1 378 ISTQVKD-IMPIVLRLLDDSDAKVRGAALQAVARLA 412
                 5666666.99*******************9999887 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00058
                 HHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm  14 vppLvrLLssedeevqeeAawALsNLaa 41 
                 vp L +L +++d +++  Aa+AL+ La+
  KKY24397.1 480 VPLLSKLFKHPDLKIKGLAAGALGSLAS 507
                 899999999****************996 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.023
                 HHHHTTTSSHHHHHHHHHHHHHH CS
         Arm  17 LvrLLssedeevqeeAawALsNL 39 
                 L++ L +ed +v+ +Aa A++ L
  KKY24397.1 932 LLKRLGDEDAQVKSNAAYAIGRL 954
                 445555**************987 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.65
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHH CS
         Arm    3 enkdavieaGavppLvrLLssedeevqee 31  
                  +nkdav    ++p+Lv+     ++++qe+
  KKY24397.1 1000 KNKDAVPTTDVLPVLVNNVLPLKQDYQEN 1028
                  5999999999******9988888888876 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.2   3.3e-09   3.3e-06       6      73 ..      30      90 ..      24      91 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3.3e-09
                HHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHCGSXHHHHHHHHHHHHHHHH CS
       IBN_N  6 kqlekqpgflsallqilanseselevRqlAalyLknlitkhWsdeeekqslpseekeqIrnnllnllg 73
                k++ + p++l++l++i+++ e+  +++qlAa+  + l++k W       + p+ ++ q+r++ll++ +
  KKY24397.1 30 KEFYSKPESLLFLIHIVVSHENA-QLKQLAAVEGRSLVSKLWL------KTPEAQRPQVRTQLLQSTM 90
                48999******************.*******************......***************9875 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.83   8.2e+02       9      54 ..     130     175 ..     123     219 .. 0.74
   2 !    8.9   0.0    0.0017       1.7      11      74 ..     355     418 ..     346     437 .. 0.91
   3 ?    4.3   0.0     0.044        44      42     110 ..     480     555 ..     449     556 .. 0.80
   4 !    7.3   0.0     0.005         5       4      72 ..     891     959 ..     889     981 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.83
     RTP1_C1   9 qdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdeds 54 
                 +++ +  ra g + L +++e+  +  +++ + +++l+ ++++d++s
  KKY24397.1 130 TSSRVEERAVGTYILFSVLETMAEGFTEKFNDLFTLFGRTIQDPES 175
                 5666677888888888888888877888888888888888888887 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0017
     RTP1_C1  11 pllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpee 74 
                 + +  r  g++ L  ++e       ++++ i+ ++l+ L d+d  v  +a ++++ Lad +pe+
  KKY24397.1 355 QDPSYRRAGILALGMVVEGAPDFISTQVKDIMPIVLRLLDDSDAKVRGAALQAVARLADDVPED 418
                 56788999**********99999************************************99986 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.044
     RTP1_C1  42 lkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleey.......eeenekeslderlkvGEaLlrvirrlg 110
                 + ll +  k++d  +   a  +L +La+++++ +l+ L +         ++++++e+ld r  v++a+ +++ + g
  KKY24397.1 480 VPLLSKLFKHPDLKIKGLAAGALGSLASTVESAFLPYLEDSMnalqefaTKKESQEELDLRASVTDAMGEMAVAAG 555
                 5555555566666666667778999*************999999999988888999***********999876665 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.005
     RTP1_C1   4 alkdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfp 72 
                 +lk+ ++++   ra ++  L+++i+       +   k+l+lll+ L ded  v  na  ++  L+++ +
  KKY24397.1 891 VLKYASSSESLERATAVGVLAEVITGMGDAVSSLTGKLLTLLLKRLGDEDAQVKSNAAYAIGRLVEKSN 959
                 678888899999***************99999*******************999999999999998754 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.53   5.3e+02     195     247 ..      83     134 ..      72     144 .. 0.81
   2 ?   -1.4   0.0      0.99   9.9e+02     386     422 ..     174     214 ..     157     215 .. 0.71
   3 !   12.7   0.0     5e-05      0.05     338     422 ..     348     432 ..     330     433 .. 0.83
   4 ?    0.0   0.0      0.36   3.6e+02     369     403 ..     473     510 ..     464     525 .. 0.72
   5 !    6.0   0.0    0.0055       5.5     250     326 ..     898     974 ..     876     976 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.53
     MMS19_C 195 nellellaseaespflrlaylrllallvNKflkdedlselldellesieesli 247
                 ++ll+ ++ ++   + r a +rl++ + N  l+d++ +el + ll++ ++s  
  KKY24397.1  83 TQLLQ-STMHEPASLVRHASSRLISAIANVDLEDAQWPELPQLLLQASTSSRV 134
                 67788.667789999***************99999999987777777666554 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.99
     MMS19_C 386 pdaevkastLetlksile...espslvse.hlssLvprLLk 422
                 ++aev+ +t+ +l+ i++   +++++ s    ++L+p+++k
  KKY24397.1 174 ESAEVRINTMLCLSKIAMaldSDEDATSVaTFQELFPSMVK 214
                 57889999999999999988633333333477888887776 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 5e-05
     MMS19_C 338 vegfks.sdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevkastLetlksileespslvsehlssLvprLLk 422
                 + +f+s +d++ + +   AL ++++  P   + ++ ++++P++l+ Ld +da+v+ ++L+ ++ ++++ p+ + +  ++L p+L k
  KKY24397.1 348 LPRFSShQDPSYRRAGILALGMVVEGAPD-FISTQVKDIMPIVLRLLDDSDAKVRGAALQAVARLADDVPEDLGKEHEKLMPMLFK 432
                 345555799999999999*******9995.7789*********************************8888888888888888876 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.36
     MMS19_C 369 lpeLptLlPlLlqaLdlpdaevk...astLetlksile 403
                 +p+L+ L+PlL +  + pd ++k   a +L  l+s++e
  KKY24397.1 473 TPYLERLVPLLSKLFKHPDLKIKglaAGALGSLASTVE 510
                 57788888888888888887766555666777666666 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.0055
     MMS19_C 250 edsqerkaaleiliwitKALvlRghplatelldkLlelLs.edaelgqlvakafgvlvsddevvlskknhanirlLyk 326
                  +s er  a+ +l+ ++ ++    ++l+ +ll+ Ll+ L+ eda++++ +a a+g lv++++   s+++ a   +L k
  KKY24397.1 898 SESLERATAVGVLAEVITGMGDAVSSLTGKLLTLLLKRLGdEDAQVKSNAAYAIGRLVEKSNA-TSETFKAYPTILSK 974
                 567777777777777777888888899999*******9999*******************999.99999998888876 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.013        13     173     209 ..     381     417 ..     371     437 .. 0.83
   2 !   13.2   0.0   4.8e-05     0.048      45     133 ..     878     966 ..     869     973 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.013
     CLASP_N 173 lldliekslkkgleDanptVRetaRstfweffkvwPs 209
                  ++ i++++ ++l D++ +VR +a +++ ++++ +P+
  KKY24397.1 381 QVKDIMPIVLRLLDDSDAKVRGAALQAVARLADDVPE 417
                 4678999999999999999999999999999888886 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4.8e-05
     CLASP_N  45 eelleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnasfsprilq 133
                 +++ e++k + + +lk +ss  +   +t++ +l e++   ++++ ++  +ll++Llk+lgd    + +na+ a+  l+++ + +++ ++
  KKY24397.1 878 PSFGELWKIFEKSVLKYASSSESLERATAVGVLAEVITGMGDAVSSLTGKLLTLLLKRLGDEDAQVKSNAAYAIGRLVEKSNATSETFK 966
                 567788888899999999**99*99******************************************************9998887765 PP

>> Tti2  Tti2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00014      0.14     113     157 ..     375     418 ..     360     433 .. 0.86
   2 ?    3.5   0.0     0.043        42     238     278 ..     450     491 ..     421     493 .. 0.75
   3 ?   -0.2   0.0      0.58   5.8e+02     122     158 ..     926     962 ..     896     974 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
        Tti2 113 qskeieanwplivPpiLnllDdtdtsvKlrGlklLqtllekless 157
                  +  i+++ + i+P +L llDd+d +v+  +l+ + +l + ++++
  KKY24397.1 375 PDF-ISTQVKDIMPIVLRLLDDSDAKVRGAALQAVARLADDVPED 418
                 444.7888889**************************99999887 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.043
        Tti2 238 prlvellleqlsevveelgi.stvkhLkrlipllseilsnPf 278
                 +++++   + ++ vv+ ++  +++ +L+rl+plls++++ P 
  KKY24397.1 450 ITIMKSGTSAIDAVVDGMDAdDATPYLERLVPLLSKLFKHPD 491
                 45555566888899999985279**************99995 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.58
        Tti2 122 plivPpiLnllDdtdtsvKlrGlklLqtlleklessk 158
                   +   +L+ l d+d +vK ++   + +l+ek ++++
  KKY24397.1 926 GKLLTLLLKRLGDEDAQVKSNAAYAIGRLVEKSNATS 962
                 55677899999********************998876 PP

>> DUF3535  Domain of unknown function (DUF3535)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.3    0.0029       2.9     118     254 ..      64     219 ..      43     237 .. 0.77
   2 !    7.8   0.0    0.0017       1.7     266     320 ..     516     569 ..     471     574 .. 0.83
   3 ?   -1.4   0.0         1     1e+03     135     203 ..     889     954 ..     872    1007 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0029
     DUF3535 118 Glllsyl...peespldcytkvLlghLnsksalqrlvaalvieewakedkkekkevstlpetlqeklleiLeee...epvyYdElalsltrlrqecqdl 210
                  l+++++   pe+++ +  t++L++ ++ + +l r++++ +i+ +a+ d ++ +  + +   lq   ++ +ee+   +++ ++ l ++ +   +  +dl
  KKY24397.1  64 SLVSKLWlktPEAQRPQVRTQLLQSTMHEPASLVRHASSRLISAIANVDLEDAQWPELPQLLLQASTSSRVEERavgTYILFSVLETMAEGFTEKFNDL 162
                 56677777777777788999*****************************76666545556667888889999889999999999999999999999999 PP

     DUF3535 211 latlesvg..............klpklavvvqgeaekaftleqaeklvttdyekllks 254
                 ++++ ++                l+k+a+    +  +a ++++ ++l  ++++ l+ s
  KKY24397.1 163 FTLFGRTIqdpesaevrintmlCLSKIAMALDSDE-DATSVATFQELFPSMVKVLQDS 219
                 99994444888777776666666666666665555.7777777777776666555555 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0017
     DUF3535 266 qLeerrrrlqaaieeakeeqealhvrvqaalAgAlvalkelPkKLnpvikpLMeS 320
                  Le++ ++lq+  ++ ke qe+l++r++ + A    a+ + P+K ++ +kpLM++
  KKY24397.1 516 YLEDSMNALQE-FATKKESQEELDLRASVTDAMGEMAVAAGPEKFQHYVKPLMQA 569
                 67777776665.45668999999999999999999******************86 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1
     DUF3535 135 kvLlghLnsksalqrlvaalvieewakedkkekkevstlpetlqeklleiLeeeepvyYdElalsltrl 203
                 k  l++ +s+ +l+r +a  v++e  +   +    vs l+ +l + ll+ L +e   + ++ a  + rl
  KKY24397.1 889 KSVLKYASSSESLERATAVGVLAEVITGMGD---AVSSLTGKLLTLLLKRLGDEDAQVKSNAAYAIGRL 954
                 5555555555555555555555555554432...22334444444444433333222233333333333 PP

>> V-ATPase_H_N  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2      0.84   8.4e+02     126     160 ..     184     222 ..      66     308 .. 0.60
   2 !    5.4   0.0    0.0097       9.6     103     160 ..     383     440 ..     372     492 .. 0.79
   3 ?    0.8   0.0      0.25   2.5e+02     108     177 ..     481     551 ..     468     555 .. 0.85
   4 ?   -3.4   0.0       4.4   4.4e+03      98     147 ..     750     800 ..     739     835 .. 0.64
   5 ?    4.5   0.0     0.018        17     104     179 ..     927    1000 ..     917    1020 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.84
  V-ATPase_H_N 126 rllakllvqgkkksnklv....esaLnrllqlLssqlss 160
                     l k++++ +  +  ++    +++++ ++++L++++ s
    KKY24397.1 184 LCLSKIAMALDSDEDATSvatfQELFPSMVKVLQDSIGS 222
                   333333332222222222244566666666666665555 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0097
  V-ATPase_H_N 103 qdpwkpflkllnrqddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlss 160
                   +d++ ++l+ll+ +d+ +   al+ +a+l+   ++   k  e++++ l++ L+  +++
    KKY24397.1 383 KDIMPIVLRLLDDSDAKVRGAALQAVARLADDVPEDLGKEHEKLMPMLFKNLTAAMQA 440
                   45788999*******************************99**********9986655 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.25
  V-ATPase_H_N 108 pflk.llnrqddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlssstnevieiavrllqell 177
                   p+l  l +++d  i+ la+  l +l+++ +       e+ +n l ++ ++++s++++++ ++++ ++ e++
    KKY24397.1 481 PLLSkLFKHPDLKIKGLAAGALGSLASTVESAFLPYLEDSMNALQEFATKKESQEELDLRASVTDAMGEMA 551
                   67777999999999999999999999999988888779999999999999999999999999998888887 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 4.4
  V-ATPase_H_N  98 akkeeqdpwkpflkllnrq.ddfivllalrllakllvqgkkksnklvesaL 147
                   +++ + + wkp l l+ ++ ++  +l  + + a+l+v++++ + ++v++  
    KKY24397.1 750 EEDGKMEKWKPGLPLQVQPiNEVKKLGEVVMTATLAVWAEEDDRQTVSECS 800
                   455555567777776555556666666777778888888888888774433 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.018
  V-ATPase_H_N  104 dpwkpflkllnrqddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlssstnevieiavrllqellrt 179 
                    +++  +lk l  +d++++  a++ + +l+ +++ +s++   +a +++l+ L+ +l  +++  ++ a+ +++ l+ +
    KKY24397.1  927 KLLTLLLKRLGDEDAQVKSNAAYAIGRLVEKSNATSET--FKAYPTILSKLEGLLGTQEARCMDNAAGCVSRLILK 1000
                    567889999999**********************9999..678888888888888888888899999999988654 PP

>> Cohesin_HEAT  HEAT repeat associated with sister chromatid cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   0.00092      0.92       2      42 .]     366     408 ..     366     408 .. 0.94
   2 ?   -2.5   0.0       7.1     7e+03      34      42 .]     730     738 ..     730     738 .. 0.93
   3 ?    1.0   0.0      0.54   5.3e+02      18      35 ..     927     944 ..     914     945 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00092
                   HHHHHHHH-GGGGGSH..HHHHHHHHHHHSS-HHHHHHHHHHH CS
  Cohesin_HEAT   2 alsslvekdpsiLsap..evldtiarrltDsspsVRdAaLell 42 
                   al+++ve  p++ s++  +++ ++ r l Ds++ VR AaL+ +
    KKY24397.1 366 ALGMVVEGAPDFISTQvkDIMPIVLRLLDDSDAKVRGAALQAV 408
                   689999999999999999**********************976 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 7.1
                   HHHHHHHHH CS
  Cohesin_HEAT  34 VRdAaLell 42 
                   VR+A++++l
    KKY24397.1 730 VRKATISTL 738
                   9*****997 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.54
                   HHHHHHHHHHHSS-HHHH CS
  Cohesin_HEAT  18 evldtiarrltDsspsVR 35 
                   ++l  + +rl D++++V+
    KKY24397.1 927 KLLTLLLKRLGDEDAQVK 944
                   6788999**********7 PP

>> DUF1804  Protein of unknown function (DUF1804)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.17   1.7e+02      70     106 ..     244     280 ..     226     287 .. 0.88
   2 ?    4.8   0.0     0.025        25      59     116 ..     497     555 ..     493     563 .. 0.90
   3 ?   -2.2   0.0       3.7   3.7e+03     119     153 ..     684     718 ..     671     750 .. 0.69
   4 ?   -1.5   0.0       2.2   2.2e+03      99     143 ..     794     836 ..     787     843 .. 0.77
   5 ?   -2.8   0.0       5.4   5.4e+03     115     150 ..     897     932 ..     888     940 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.17
     DUF1804  70 qlledfvvqvqetleelrentelsaedkveiLasLsd 106
                 ql+++ +    ++++++  nt+++  ++v++++ L +
  KKY24397.1 244 QLIAKHFGNLIKLMNQISTNTDMAEDTRVQAISFLMS 280
                 778888888999*******************998765 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.025
     DUF1804  59 laeggieevakqlledfvvqvqetleelrent.elsaedkveiLasLsdsfsktvaaak 116
                 la g++ ++a+++ + f+ + +  +++l+e   + + ++ +++ as +d++ +++ aa+
  KKY24397.1 497 LAAGALGSLASTVESAFLPYLEDSMNALQEFAtKKESQEELDLRASVTDAMGEMAVAAG 555
                 788999999*********************876999999**************998875 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.7
     DUF1804 119 dPelsklavalevlellaefvrekfpehaeallei 153
                  P + + ++a+evl ++++ +++ f    e+ +e 
  KKY24397.1 684 TPVALEKEIAVEVLGDILSNTKSAFLPYFEKTVEN 718
                 45555667777777777666665554444444443 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 2.2
     DUF1804  99 eiLasLsdsfsktvaaakrldPelsklavalevlellaefvrekf 143
                 +++++ s+sfs+t ++a+     +s+ + + +v++  ++++ +++
  KKY24397.1 794 QTVSECSRSFSETLKVAGP--ALISEPGAIEKVVNIVIQIITQQH 836
                 56788999*****999965..457888888888888887777665 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 5.4
     DUF1804 115 akrldPelsklavalevlellaefvrekfpehaeal 150
                 + +   ++   +v +ev+  ++++v++   +++  l
  KKY24397.1 897 SSESLERATAVGVLAEVITGMGDAVSSLTGKLLTLL 932
                 445567778888999999999998887766666555 PP

>> DUF4042  Domain of unknown function (DUF4042)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.96   9.5e+02      30      68 ..      73     109 ..      54     192 .. 0.64
   2 ?   -1.3   0.0       1.5   1.5e+03       2      33 ..     178     212 ..     177     220 .. 0.72
   3 ?    6.0   0.0    0.0088       8.8      42      71 ..     386     415 ..     374     438 .. 0.78
   4 ?   -1.6   0.0       1.9   1.9e+03     143     177 ..     476     510 ..     474     512 .. 0.88
   5 ?   -1.1   0.0       1.4   1.4e+03      41      72 ..     928     959 ..     917     964 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.96
     DUF4042  30 lpdevlqerkseatLltillkDpspkvRaaalqvlaalL 68 
                  p+   q+ + + +Ll+  ++ p + vR a+  +++a+ 
  KKY24397.1  73 TPEA--QRPQVRTQLLQSTMHEPASLVRHASSRLISAIA 109
                 4555..777888889999999999999999988888773 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
     DUF4042   2 vRiaalqllqalvkavdk...kslygyWhvllpde 33 
                 vRi  + +l++++ a+d+    +  +  + l+p+ 
  KKY24397.1 178 VRINTMLCLSKIAMALDSdedATSVATFQELFPSM 212
                 9************9998622245666666677765 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0088
     DUF4042  42 atLltillkDpspkvRaaalqvlaalLdgs 71 
                   ++  ll D+  kvR aalq++a l d+ 
  KKY24397.1 386 MPIVLRLLDDSDAKVRGAALQAVARLADDV 415
                 456667899***************998865 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1.9
     DUF4042 143 ltevvksvkkllkekdsnvkvsallvlgalvstke 177
                 l ++v  + kl k+ d ++k  a  +lg l st e
  KKY24397.1 476 LERLVPLLSKLFKHPDLKIKGLAAGALGSLASTVE 510
                 568889999999******************99976 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 1.4
     DUF4042  41 eatLltillkDpspkvRaaalqvlaalLdgsk 72 
                   tLl   l D   +v+  a+ ++  l+++s+
  KKY24397.1 928 LLTLLLKRLGDEDAQVKSNAAYAIGRLVEKSN 959
                 45666666778888888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1085 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.55
# Mc/sec: 5912.44
//
Query:       KKY24398.1  [L=613]
Description: hypothetical protein UCRPC4_g02508 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-78  262.7   0.0    5.9e-78  262.4   0.0    1.1  1  Sulfatase    Sulfatase
    0.00015   21.6   0.0    0.00038   20.3   0.0    1.6  1  DUF4994      Domain of unknown function
    0.00021   21.5   0.6     0.0014   18.9   0.0    2.5  2  DUF4976      Domain of unknown function (DUF4976)
    0.00047   20.9   0.1     0.0076   17.0   0.1    2.4  1  Sulfatase_C  C-terminal region of aryl-sulfatase


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.4   0.0   1.3e-81   5.9e-78       1     309 []       7     444 ..       7     444 .. 0.94

  Alignments for each domain:
  == domain 1  score: 262.4 bits;  conditional E-value: 1.3e-81
                 EEEEEEEESSE-TTGSGGGTTTSCSSHHHHHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTT........................ CS
   Sulfatase   1 pnvvliladdlgagdlglyggktattpnldrlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgg........................ 75 
                 pn+++i+addlg++d+g++gg+++ tpn+d+l + glr+t f++aa +csp+ra++ltg ++h +g ++  e+++                        
  KKY24398.1   7 PNFLVIVADDLGFSDIGCFGGEIR-TPNIDKLSKDGLRLTGFHAAA-ACSPTRAMILTGTDHHIAGLGNLIEWTDfsgqnfpkgskystapqrgmpgye 103
                 9**********************9.9*****************887.**************************************************** PP

                 HHCTTTS-HHHHHHHHTT-EEEEEEES-SCCSGGGSHHCCTTTSE.EEETSSSCHHTCCCCCCCCCECTCCC.................TTTTCSHHHH CS
   Sulfatase  76 gglpqteatLpellkeaGYntaaigkwhlgwssrqsvyknrgfdr.flgfptgsaalkdpekseyngevlrv.................ppeggysddr 156
                 g l++++a+Lpe+l+e GY+t ++gkwhlg++++ s + +rgfdr +   p++s+++++ +++e   + l +                  p+  ys++ 
  KKY24398.1 104 GYLNERVAALPEILREGGYHTVMAGKWHLGLTKERS-PHARGFDRsLALLPACSNHYNYIPDEELP-KFLEKsvialhmeddhyvkkedMPKDWYSSNS 200
                 ********************************9999.469*****555556666666666666554.3444479***************7777788888 PP

                 HHHHHHHHH.....HCCC.TSSEEEEEEE-TTSSSTCTCGGHTCCGSTTTTCCCCCCH......................................... CS
   Sulfatase 157 lldealefl.....larn.dkpfflylatlapHappeapdeyakkyatffddgseaar......................................... 208
                 + d++l++l       ++ d pff+y+ ++apH+p++ap+ey++ y++ +d+g+ea r                                         
  KKY24398.1 201 YGDQMLKYLqewheDSKDkDCPFFAYYPFSAPHWPLQAPKEYVDHYRGVYDEGPEALRqarlkklielgmipkdvvphpvvadevagwdemtpeqqkls 299
                 8888888888888967777*************************************9999999************************************ PP

                 .HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCG..........................................HHTTSSSCT CS
   Sulfatase 209 .qlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgaslee..........................................sngplrggk 264
                  +++eay+++ve+ D++igrv ++Le  g+ldnt+++f+SD+ga+                                             +++p r++k
  KKY24398.1 300 cRAMEAYAGMVECLDHNIGRVTDYLESIGELDNTYIMFFSDNGAEGAAyeaypmvsgelmhhlgayynnsyenignrdsfvwygprwaqaATAPSRLYK 398
                 ********************************************765599************************************************* PP

                 TCSSSHHHHBEEEEEEETTTSHC..EEECSEEEGGGHHHHHHHHTTE CS
   Sulfatase 265 ganayeggtrvPllvwwpgekap..rvseelvshiDlfptildlagi 309
                    ++egg+rvP+++++p+ +a+   + e++++++D++pt+ldlagi
  KKY24398.1 399 A-YTTEGGVRVPCVIRYPKLQAQapPITETFATVMDIAPTLLDLAGI 444
                 *.*******************************************97 PP

>> DUF4994  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   8.4e-08   0.00038      68      95 ..     511     538 ..     504     540 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 8.4e-08
     DUF4994  68 pqLydlkkdegekenvaekhpekvkelk 95 
                  qLydl+kd+ge++++a++hpe+++el 
  KKY24398.1 511 WQLYDLSKDPGETKDLANEHPEILQELL 538
                 59***********************995 PP

>> DUF4976  Domain of unknown function (DUF4976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2       0.6   2.7e+03      10      37 ..     205     233 ..     198     238 .. 0.71
   2 !   18.9   0.0   3.1e-07    0.0014      44      91 ..     491     538 ..     457     549 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.6
     DUF4976  10 llpllkg.kkkkewrkalyYhyyeyPaeh 37 
                 +l+ l++ +++++ ++  ++ yy + a+h
  KKY24398.1 205 MLKYLQEwHEDSKDKDCPFFAYYPFSAPH 233
                 4444443156677888899****998888 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 3.1e-07
     DUF4976  44 gvrteryk..lihfykdidewelyDlkkDpkelknlyddpeyeevvkelk 91 
                 ++r +++k  +i f k + +w+lyDl kDp e k+l ++  + e+ +el 
  KKY24398.1 491 AIRKNNWKadFIPFPKGTSAWQLYDLSKDPGETKDLANE--HPEILQELL 538
                 6888888855799**********************9875..445555554 PP

>> Sulfatase_C  C-terminal region of aryl-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.7e-06    0.0076      56     104 ..     513     558 ..     481     575 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.7e-06
                  EEETTT-TT--S-TTSTTCCHHHHHHHHHHHHHHHCCC------TCCHH CS
  Sulfatase_C  56 lFdlerDpsEkyplsaespeykevlkeikkaveehkktlkpvpnqlakg 104
                  l+dl++Dp+E+++l+   +e++e+l+e+ + +e+  +++  vp q + g
   KKY24398.1 513 LYDLSKDPGETKDLA---NEHPEILQELLEHWEKYCEEVGVVPLQPELG 558
                  9**************...7999999999999999999998888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.54
# Mc/sec: 3446.31
//
Query:       KKY24399.1  [L=202]
Description: hypothetical protein UCRPC4_g02509 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.29s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 1363.56
//
Query:       KKY24400.1  [L=353]
Description: putative lipase 2 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-30  107.1   0.0    1.4e-30  106.8   0.0    1.1  1  Abhydrolase_3  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.096   11.5   0.0       0.14   11.0   0.0    1.2  1  COesterase     Carboxylesterase family


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.8   0.0   1.6e-34   1.4e-30       1     210 [.      94     316 ..      94     317 .. 0.85

  Alignments for each domain:
  == domain 1  score: 106.8 bits;  conditional E-value: 1.6e-34
                    EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHH.HHTETTC.EEEEEEETHHHHHHHHHHHHHHH CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqaw.elgadps.rivlaGdSaGGnlaaavalrard 94 
                    ++ fHGGG ++g+++ + + +r l+ + +av++ + YrlAP  p+P  ++da+++l +  + a  +l+adp+    + G+SaG+ +   +++ ard
     KKY24400.1  94 VLLFHGGGGCVGTPEDEAPGARLLVTAFNAVCITPSYRLAPSDPYPSGLNDAWDSLVHFSQYAPlHLNADPTlGFLITGTSAGACFCVTLSHLARD 189
                    689************************************************************99******9789999****************** PP

                    TT.---EEEEEEESE....-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSSGGGGGST....TTSGGGC.S-...SST---EEEEEETT- CS
  Abhydrolase_3  95 eg.epkvagqvliyP....vtdlertesesikkaeeladgplltraaldlfwrlylpeadrddp....lasplla.ed...lsglpptlvvvaefD 177
                    ++ +p+++g+ l +      t   ++e   ++++++ +++p+lt a    f r+y   ad+++p    +++pl   ++      lpp +++ a+ D
     KKY24400.1 190 NDlTPPLTGVHLSCGvmlpPTHC-PPEYLPYHQSHSRDSDPVLTSAVHSTFQRIYG--ADLSSPielsALHPLPTsPSsppTPSLPPHFIQAAGLD 282
                    98455555554444422223434.6667777777777888****99999999*996..55555554448888866423577999************ PP

                    TTHHHHHHHHHHHH.HTT--EEEEEETTEETTGG CS
  Abhydrolase_3 178 plrdegeayaerlr.aagvevelieyegmvHgfa 210
                    + rd+++ y   lr ++gv+++l+++ g++H+++
     KKY24400.1 283 LARDDSIVYEMILRdKWGVKTRLEVTAGVPHAWF 316
                    **************77***************997 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.5e-05      0.14     102     145 ..      88     133 ..      42     135 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.5e-05
                 TSSEEEEEEE--STTTS-BGCG..S-THHHHHHHTSEEEEE----H CS
  COesterase 102 kkklPVlVwihGggfqtgsase..ydgsaLaaegnvivVtinYRlG 145
                 +   P +  +hGgg  +g+ ++   +++ L++ +n + +t +YRl 
  KKY24400.1  88 TPLGPLVLLFHGGGGCVGTPEDeaPGARLLVTAFNAVCITPSYRLA 133
                 344599**************98845566667777**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.50
# Mc/sec: 2111.79
//
Query:       KKY24401.1  [L=273]
Description: putative f-actin-capping protein subunit alpha [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-99  333.3   0.1    1.2e-99  333.1   0.1    1.0  1  F-actin_cap_A  F-actin capping protein alpha subunit
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.026   14.4   0.0    1.5  1  ACAS_N         Acetyl-coenzyme A synthetase N-terminus


Domain annotation for each model (and alignments):
>> F-actin_cap_A  F-actin capping protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.1   0.1  1.3e-103   1.2e-99       1     265 [.       8     268 ..       8     269 .. 0.97

  Alignments for each domain:
  == domain 1  score: 333.1 bits;  conditional E-value: 1.3e-103
                    HHHHHHT--TT-HHHHHHHHHCC-S-CC.CCTTTHHHHHHHHHHHHT-EEEETTE..EEE--STTEEETTEEEEGGGTEEEEEETTTTEEEEEEE- CS
  F-actin_cap_A   1 asslllqsPpgelneVlkDlrallsdds.kleealaealeeyneeqlvtvelpgssekvliseanklgeeryvdpkskksfkfdhlkqkasdvesv 95 
                    as +++ +Ppgel +V++Dl++l+sd++ +l ++l++a+++yne+ql+t++lpgss++vlis++n+lg+++y+d +s++s +fdh++qkas+v+s+
     KKY24401.1   8 ASAFIKGAPPGELGDVVADLKTLTSDSNlALIQSLKPAFQSYNEDQLTTIKLPGSSQSVLISKYNRLGDGKYFDVESNSSWDFDHITQKASNVQSY 103
                    689*********************75551566**************************************************************** PP

                    -S-GGGHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEETTEEEEEEEEEEEEEEGGGTEEEEEEEEEEEESSEEEEEEEEEEEEEE-SSEEEEEEEE CS
  F-actin_cap_A  96 eleseleelrkalekalekYvkehYpsgvasvypkeeeeekelaiiivgnkynpsnFwnGrwrseytvdsssktleGkikvqvHYyEdGNVqlkts 191
                    + +s +++l k+l+k+l++Y++ehYp ++++vyp+++++++ +ai++v+nky+p+nFwnGrwrs yt+d+ss+tl+G+++v++HYyEdGNV l+t+
     KKY24401.1 104 TDDSPNSDLIKSLSKSLSSYASEHYPASTYGVYPDSSSSGS-IAILLVANKYSPNNFWNGRWRSIYTFDPSSSTLSGTLQVHIHYYEDGNVALTTN 198
                    999*******************************8877777.****************************************************** PP

                    EEEEEEEE--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS-SS-TTSS---CCHHTXXXXXXXX CS
  F-actin_cap_A 192 kevseslsvsseessakeivklikeaenkyqeeLnesyeeLsekafkaLRRqLPvtrqkidWdkvlnyklgqdl 265
                    k+vs s+s    + sa ei++ i+++e++yqeeLn+++ ++++++fkaLRRqLPvtrqk++W+kv++yklg+dl
     KKY24401.1 199 KPVSISVS----SPSAPEILRKIAATEKQYQEELNKEFVKMNDSSFKALRRQLPVTRQKVEWEKVGGYKLGSDL 268
                    *******9....99**********************************************************98 PP

>> ACAS_N  Acetyl-coenzyme A synthetase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.9e-06     0.026      12      51 ..     156     195 ..     153     198 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.9e-06
                 HHHHHHHHHCCS--SB--S-SECSTTTCT-EESTT-EE-H CS
      ACAS_N  12 peaFWaeqakeldWekpfdkvldgskgpfikWFeGGklNi 51 
                 p+ FW+  ++ ++ + p +++l+g+ + +i+++e+G +  
  KKY24401.1 156 PNNFWNGRWRSIYTFDPSSSTLSGTLQVHIHYYEDGNVAL 195
                 899*********************************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 1662.74
//
Query:       KKY24431.1  [L=807]
Description: hypothetical protein UCRPC4_g02389 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-56  190.4  10.5    6.6e-56  189.6  10.5    1.3  1  RSN1_7TM  Calcium-dependent channel, 7TM region, putative pho
    2.7e-29  101.9   1.5    2.7e-29  101.9   1.5    2.7  2  RSN1_TM   Late exocytosis, associated with Golgi transport
    1.3e-13   50.9   0.1    3.6e-13   49.5   0.1    1.7  1  PHM7_ext  Extracellular tail, of 10TM putative phosphate tran
    8.5e-06   26.1   0.0    1.4e-05   25.4   0.0    1.3  1  PHM7_cyt  Cytosolic domain of 10TM putative phosphate transpo


Domain annotation for each model (and alignments):
>> RSN1_7TM  Calcium-dependent channel, 7TM region, putative phosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.6  10.5   1.5e-59   6.6e-56      55     274 .]     303     525 ..     284     525 .. 0.94

  Alignments for each domain:
  == domain 1  score: 189.6 bits;  conditional E-value: 1.5e-59
    RSN1_7TM  55 gllPtlllsllla.llpiilrlls.klqGalsrselelsvvskyfaFlvvnvFlvftlagtalslleeiidnp..tsipkllaeslpkasnFfityill 149
                 g lP+++  +ll+  lpiilr l+ ++ Ga++ se e+s++ +yf+Flv+++F+++t++++++s++e+i++np  tsip++la+++p a+n++++++++
  KKY24431.1 303 GTLPPVIQVILLSgPLPIILRALTnNVGGAVTASEGERSLQLWYFIFLVIELFIIPTISSGLTSIVENILNNPfgTSIPNILATNMPTAANYYFSFLVV 401
                 789999987766526******99735899******************************************76669*********************** PP

    RSN1_7TM 150 qglagaaleLlqlvklilflikrkflsktprdlaerytkppsfdygteypkvllifvialiYsviaPlilpfaliyfllgylvykyqllyvyd.tkyes 247
                 q+l+++a  +lq v+l+ +++ +    ktp+ ++++ +  ++ + g+++p++++++vi+l+YsviaPlil+f++++f+l ++v k++llyv++  + + 
  KKY24431.1 402 QALSISASSILQTVRLFNYYVLGG--AKTPHSVFDKLSWTNMTRIGSNIPWYTTFAVIGLVYSVIAPLILVFMVLTFGLFWIVIKNNLLYVVRtGNVDG 498
                 ********************9994..69*****************************************************************5566** PP

    RSN1_7TM 248 gGklwpralnrllvglvlfqllliglf 274
                 gG ++p+a+n+l++gl++++++liglf
  KKY24431.1 499 GGLFFPKAINQLFFGLYCMEVCLIGLF 525
                 *************************98 PP

>> RSN1_TM  Late exocytosis, associated with Golgi transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9   1.5   6.1e-33   2.7e-29       2     113 ..      26     139 ..      25     169 .. 0.90
   2 ?    1.7   1.9     0.043   1.9e+02      91     146 ..     403     460 ..     391     493 .. 0.62

  Alignments for each domain:
  == domain 1  score: 101.9 bits;  conditional E-value: 6.1e-33
     RSN1_TM   2 lltslvinlvlalvflllFlilRkk..nkrvYaprtylkgeeertpplpqkglfgWipallkisde.eilekaGLDayvflrflkmlikiflvlavlal 97 
                 +  sl+  ++l++v++ +F+i+R+    kr+Y+pr  l + ++r +p+p +++++Wi +++k++++ eil+kaG+Day+f+rfl m++kif+++av++l
  KKY24431.1  26 FAISLAAGFILFGVQFGAFIIVRNYlwSKRIYQPRAFLVPLKSRVKPPP-NNPLKWILTVFKTPEDpEILQKAGIDAYFFMRFLAMCLKIFFPMAVIIL 123
                 678999*******************989**********99888888888.99***********97549******************************* PP

     RSN1_TM  98 ivLlPvnatggegeds 113
                 ++L+P+n++gg++ ++
  KKY24431.1 124 PILIPLNFSGGKDTKT 139
                 **********998855 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.043
     RSN1_TM  91 vlavlalivLlPvnatggegedske.sksgldklsisnvs.egsnrlwahvvvayift 146
                  l++ a  +L  v+  +    +  +  +s +dkls++n++  gsn  w ++++++  +
  KKY24431.1 403 ALSISASSILQTVRLFNYYVLGGAKtPHSVFDKLSWTNMTrIGSNIPWYTTFAVIGLV 460
                 4555666666666655554443333034788********9878885554444433322 PP

>> PHM7_ext  Extracellular tail, of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.1     8e-17   3.6e-13      20      93 .]     718     796 ..     707     796 .. 0.83

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 8e-17
    PHM7_ext  20 eynee..eeeyeeelekkaYlhPavtskepllWiprDpagvSkqeieetekvi...gisdegaeldekgkvewteaPpd 93 
                 +++ e  ++e ++ l+  a++hP ++++ p +Wip D++gvS++e+++t +      +s++ga l++  kv+++++Ppd
  KKY24431.1 718 NDELEdlDAEDRDMLTSVAFTHPILREPSPSVWIPSDDLGVSDDEVKRTVDLFrnvSMSNKGAFLNKHLKVRVKKPPPD 796
                 4444455566677788889****************************99886653377****************9**96 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   3.2e-09   1.4e-05       2      72 ..     187     255 ..     186     290 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 3.2e-09
    PHM7_cyt   2 rTvlvtgiPkelrseeklkeffeelypgkvvesvqivrdvkkldklveerekavrkleaalskykkngkkl 72 
                  Tvl+t+iPkel++ +++  +  + +pg v ++++i+rd+k l + v    ++   le+a++ +++++ k 
  KKY24431.1 187 TTVLITDIPKELCNFDAIMGLYGD-FPGGV-RRIWINRDLKSLVDKVILQHQLRALLETAETDLIRKAIKA 255
                 7********************998.69997.*************9999999999999***99998887443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (807 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       841  (0.0469072); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.49
# Mc/sec: 4941.65
//
Query:       KKY24432.1  [L=999]
Description: putative n-methylhydantoinase a acetone beta subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.1e-101  340.2   0.1   2.3e-101  339.1   0.0    1.6  2  DUF917          Protein of unknown function (DUF917)
    2.9e-29  102.0   7.4    6.6e-28   97.6   0.0    3.2  4  Hydant_A_N      Hydantoinase/oxoprolinase N-terminal region
    3.3e-29  102.1  15.0    1.5e-26   93.3   1.9    3.6  4  Hydantoinase_A  Hydantoinase/oxoprolinase
     0.0022   17.6   3.7       0.57    9.6   0.2    2.5  2  BcrAD_BadFG     BadF/BadG/BcrA/BcrD ATPase family
     0.0066   15.1   0.9       0.42    9.1   0.0    2.3  2  MutL            MutL protein
  ------ inclusion threshold ------
      0.074   13.5   3.8       0.92   10.0   0.0    3.5  3  FtsA            Cell division protein FtsA


Domain annotation for each model (and alignments):
>> DUF917  Protein of unknown function (DUF917)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.1   3.3e+03      23      68 ..     407     447 ..     404     471 .. 0.65
   2 !  339.1   0.0  7.7e-105  2.3e-101       2     350 .]     610     979 ..     609     979 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.1
                 HHHHHHTT-SBTT--EEEE-GGG--SEE..EEEEEEE-HHHHTT-S CS
      DUF917  23 sgylllrqaleegksvrvvsldelpddalvvvvgamGsptvieekl 68 
                 +++l ++++le +     v++ +l+ d+ +++    Gs+ +i +  
  KKY24432.1 407 QARLSMKRILE-N----AVDAMKLNADDAIIILVGGGSIVAIDDLD 447
                 56666777776.3....47888888888888888888887776554 PP

  == domain 2  score: 339.1 bits;  conditional E-value: 7.7e-105
                 GHHHHHHHHHHTTTT-SS-HHHHHHHHTT-SBTT--EEEE-GGG--SEE..EEEEEEE-HHHHTT-SS-HH....HHHHHH.HHHT--EEEEE-SSSSC CS
      DUF917   2 dlealatGaavLGtGGGGspysgylllrqaleegksvrvvsldelpddalvvvvgamGsptvieeklpsgdelleaveale.kllgrkidavislEiGG 99 
                 d e+latG++vL++GGGG+ y  y+ +r+a+++gk++ vv+++ lp+d++++    +G+ptv+ e++psg+e  +a +al   + g k++a  ++EiGG
  KKY24432.1 610 DCEFLATGCSVLACGGGGPGYMCYMAARAAIKAGKRLPVVDIETLPEDEYILGSVSYGAPTVTLERIPSGTESKDATDALLgSYPGLKMAAQAAIEIGG 708
                 789*******************************99******************************************9862566999*********** PP

                 CHHHHHHHHHHHHT-EEESB-SSSS--SSGGGSHHHHTT----SEEEE-SSS-EEEEEE.---HHHHHHHHHHCTTTTTEEEEEEEEE-HHHHHH--SB CS
      DUF917 100 lNglvallaaaklglpvvDaDgmGRAfPelqqttfavagisltPlaladekgnvvllkkaqsdkavErllRaalvemgsfagvaaypmtgaelkraavp 198
                 +Ng+ +ll+a  + +p+vD+D+mGRA+P+l+++t+ ++g s+tP++ +d++gnvv+++ka++ +++E++ R+a  e+g f+ ++  p+t +++k+++  
  KKY24432.1 709 MNGIRPLLTAIDYSVPTVDGDFMGRAYPRLYMLTPWLFGLSATPCTQSDGNGNVVTVNKAADMHKLEKIHRKAGHELGLFSQLVIPPITVKDTKKVGTL 807
                 ***********************************************************999989********************************** PP

                 SHHHHHHHHHHHHHTT--...-SHHHHHHHHHH-EEEEEEEEE--------.------EEEET.................EEEEEEESSSEEEEE.... CS
      DUF917 199 gtlslalriGravaearea.kdvveailealgggakvlfkGkivdverrte.ggfdvgevtiegldede..........grelkiefqNEnllae.... 281
                 gt sla+ iG+av +ar++ +++++ai++a   + ++l++Gkiv+v+r ++ gg++ g v+++ +++de          +r + ++fqNE+++ae    
  KKY24432.1 808 GTTSLAWYIGKAVYQARQEkTSIMDAIVNANP-SGRILYTGKIVSVHRYIStGGYTEGRVRLKPISSDEqeygessiseKRDMVLPFQNEYIYAElvdp 905
                 *****************8855999********.7888***********9988*************999999************************7665 PP

                 ....ET.....-SEETTSEEEEEHHB-SSSSB-TTTT.TS-EEEEEE---GGGS..SHHHH-S-....-.....--- CS
      DUF917 282 ..edge.....vlatvPDlIsvldaetgepigteelryGlrVtVlalpasekwrteeglelvgPkaFGy.dleykpl 350
                   +  e     +l+tvPDlIs++   +g ++gt++lryG rV+V+a+ a++ w t +gl+++gPk FGy dl+++pl
  KKY24432.1 906 deK--EgtrgkILCTVPDLISLI-GTDGYALGTQDLRYGVRVSVVAFVAHPHWYTSQGLACGGPKEFGYtDLDFVPL 979
                 441..144566************.889******************************************99**9996 PP

>> Hydant_A_N  Hydantoinase/oxoprolinase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.0   2.2e-31   6.6e-28       1     177 [.       8     188 ..       8     189 .. 0.94
   2 !    7.5   0.1     0.001         3       2      18 ..     295     311 ..     294     329 .. 0.85
   3 ?   -1.5   0.1      0.58   1.7e+03       9      31 ..     378     407 ..     374     438 .. 0.59
   4 ?   -3.4   0.1       2.3   6.9e+03      21      52 ..     473     506 ..     466     516 .. 0.50

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 2.2e-31
  Hydant_A_N   1 rigIDvGGTfTDavaldeke......eevavlKllstpdavaegirealeevleesiprtskidvvrmGTTvatNallerkg...ervaLittkgfrdl 90 
                 rig+DvGGT+TD v+l +++      +++ ++K+++t ++v++gi++a+e +l +s ++++++++v++GTT+++N +++ +    ++vaL+ + g    
  KKY24432.1   8 RIGVDVGGTNTDSVVLHPGQarepqrGVLGAFKTPTT-QDVTHGIVRAIEGALYQSAIAREAVSAVMIGTTHFINSVVQADDlnlRKVALLRICGPYTK 105
                 79***************999*****************.*******************************************999***********9988 PP

  Hydant_A_N  91 leigrqnrpdlfelrikkplvlyeevvevderveadgevlkpldeeevrealkalkaagvesiavvllhSyln..pehElrvaeiarei 177
                  + +    p +         ++   v  +d+++e+d + + pl+e+++r++ + ++++g++ +a++ ++S+l     +E+rv+ei+ ++
  KKY24432.1 106 ENPAFLDFPPI------LARIMNGHVAYLDGGLEFDTRDIMPLNEDQIRSECQTIREKGITDVAIAGIFSPLDieGRQEERVKEIILQE 188
                 88888888888......45889999999******************************************98622579*******9765 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.001
  Hydant_A_N   2 igIDvGGTfTDavalde 18 
                 i  D+GGT TD++al +
  KKY24432.1 295 IVADIGGTTTDVCALLP 311
                 789**********9865 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.58
  Hydant_A_N   9 TfTDavaldeke.......eevavlKllst 31 
                 T TD+v+ ++ke        + ++ K+ ++
  KKY24432.1 378 TTTDIVVASGKEnigdsdkVQNISSKTITQ 407
                 889****99998555554322333344444 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 2.3
  Hydant_A_N  21 eevavlKllst..pdavaegirealeevleesip 52 
                 +++ ++K+l    +d v+  i +  ++ + e+++
  KKY24432.1 473 GHIDTVKVLEGldEDRVIDEISRDAKQKAIEAGA 506
                 5566666666544444444444444444444444 PP

>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.011        34      82     101 ..       9      28 ..       3      45 .. 0.82
   2 !   93.3   1.9   5.1e-30   1.5e-26       1     174 [.     208     388 ..     208     390 .. 0.89
   3 !   13.5   0.2     1e-05     0.031     208     288 ..     395     472 ..     388     475 .. 0.91
   4 ?   -4.1   0.6       2.5   7.4e+03     246     262 ..     621     637 ..     618     641 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.011
  Hydantoinase_A  82 ItfDmGGTstDvslikdgev 101
                     I++D+GGT tD  ++  g+ 
      KKY24432.1   9 IGVDVGGTNTDSVVLHPGQA 28 
                     99*********999988876 PP

  == domain 2  score: 93.3 bits;  conditional E-value: 5.1e-30
  Hydantoinase_A   1 rtetavvnAylspilreylesvekslekrgakarlmvmqsdGglvsadearkkpvetilSGPaaGvvgaaatsklag......ekkvItfDmGGT 89 
                     r +++++n  +    r+++++++++++  g +++l++ q dG +++a +a+k p++t  SGP  +  gaa+++ l++      +++vI+ D+GGT
      KKY24432.1 208 RENATILNTSILKFARKTIQGFKAAMKALGLTCPLYLTQNDGTIIDAGTAQKYPIKTFSSGPTNSMSGAAYLAGLDTasgqisDSQVIVADIGGT 302
                     7789**************************************************************99999855443111111689********* PP

  Hydantoinase_A  90 stDvslikdgevevs..leteiagvkvrlpaldirtvgagGgsilvvdeggklrvgpesagadpgpacyrkGgteltvTDanlvLGr 174
                     +tDv+++    + ++  ++ ei+gv+ ++p+ ++ +vg+gGg+i+   + gk+ vgpes+g +    +   Gg+++t+TD+ +  G+
      KKY24432.1 303 TTDVCALLPSGFPRQagTWVEIGGVRSSFPMPEVLSVGLGGGTIV-AEHDGKVIVGPESVGHRLLKESLIFGGKTMTTTDIVVASGK 388
                     ****887655444431388999***********************.9999*******************************998775 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 1e-05
  Hydantoinase_A 208 lkveevAegilsvavenmanavrklsvergldpkeltlvvfGGaGaqhaaalaeelgvkkvivppyagvlsalGmalAdvr 288
                     +kv++++ + ++ a   m++ +++ + + +l+ ++++++ +GG++ + +  l    gvkk+i p+    ++a+G+a+A+v+
      KKY24432.1 395 DKVQNISSKTITQARLSMKRILENAVDAMKLNADDAIIILVGGGSIVAIDDL---DGVKKMIRPQFHDCANAVGAAIAKVS 472
                     56999**************************************998777766...8**********************985 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 2.5
  Hydantoinase_A 246 vvfGGaGaqhaaalaee 262
                     ++ GG+G+  ++++a++
      KKY24432.1 621 LACGGGGPGYMCYMAAR 637
                     56788888888888876 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.2   0.00019      0.57       1      71 [.       9      78 ..       9      93 .. 0.80
   2 !    8.5   0.4   0.00042       1.2       4     112 ..     298     483 ..     297     507 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00019
                 EEEEE-SSEEEEEEEETTTE.EEEEEEE--TTS-HHH.........HHHHHHHHHHT--GGGECEE..EEES CS
  BcrAD_BadFG  1 vGiDgGsTttkavlmdekge.vlgrgitnsanlesvrfeaaekvleealtealerageeeadieetylvgtg 71
                 +G+D+G+T t  v++   +     rg+ ++ ++    ++++   +++a++ al ++   ++ +  +++++t 
   KKY24432.1  9 IGVDVGGTNTDSVVLHPGQArEPQRGVLGAFKTP--TTQDVTHGIVRAIEGALYQSAIAREAVSAVMIGTTH 78
                 7**************9765545556666655444..5678999999***99999999999999999888775 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00042
                  EE-SSEEEEEEEETTTE..EEEEEEE--...................................................................... CS
  BcrAD_BadFG   4 DgGsTttkavlmdekge..vlgrgitns...................................................................... 29 
                  D+G+Ttt ++ +  +g    +g+++  +                                                                      
   KKY24432.1 298 DIGGTTTDVCALLPSGFprQAGTWVEIGgvrssfpmpevlsvglgggtivaehdgkvivgpesvghrllkeslifggktmtttdivvasgkenigdsd 395
                  66777776666654443122233322224444666666666666666777777777777777777777777777777777777888888888888888 PP

                  ..TTS-HHH.........HHHHHHHHHHT--GGGECEE..EEESTTCCCTCTTBSEEE-..HHHHHHHHHHHH-TT--....EEEEEET CS
  BcrAD_BadFG  30 ..anlesvrfeaaekvleealtealerageeeadieetylvgtgyGratlpekfekeiirseilvhgdGavalypgtr....tvldigG 112
                    +n++s  +++a+ +++++l++a+++++++++d + ++lvg g   a ++ +  k++ir ++  ++++++a  +++     tv +  G
   KKY24432.1 396 kvQNISSKTITQARLSMKRILENAVDAMKLNADD-AIIILVGGGSIVAIDDLDGVKKMIRPQFHDCANAVGAAIAKVSghidTVKVLEG 483
                  889*****************************99.566677777777777777999999999888888888888888855566655555 PP

>> MutL  MutL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.1    0.0052        15       4      50 ..      11      57 ..       9      78 .. 0.79
   2 !    9.1   0.0   0.00014      0.42     235     264 ..     276     309 ..     257     324 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0052
        MutL  4 iDiGSttTkvtlvdlekvd...erllgqaeapTtveeedvleGleealee 50
                +D+G t T  ++++  + +     +lg  ++pTt    dv++G+ +a+e 
  KKY24432.1 11 VDVGGTNTDSVVLHPGQARepqRGVLGAFKTPTTQ---DVTHGIVRAIEG 57
                89******999999977667756677777778776...8*****999985 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00014
        MutL 235 vellae....eeekglgdllvvDvGGaTTdvhsv 264
                 +  la     + + +  +++v D+GG+TTdv + 
  KKY24432.1 276 AAYLAGldtaSGQISDSQVIVADIGGTTTDVCAL 309
                 4444443221112223589************986 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00031      0.92       1      45 [.       9      59 ..       9     285 .. 0.85
   2 ?    1.3   0.1      0.16   4.7e+02       2      13 ..     296     307 ..     295     315 .. 0.87
   3 ?    1.0   0.2      0.19   5.7e+02       8      45 ..     378     427 ..     377     570 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00031
                EEEEE-SSSEEEEEEETTEEEE.....EEEES-.-HHHHHHHHHHHHT--H CS
                xxxxxxxxxxxxxxxxxxxxxx.....xxxxxx.xxxxxxxxxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedgalvh.....lrvigv.ggngitkdiakalrtav 45
                ++vD+G++ td +v++ g+ +      l   ++   + +t++i++a+  a+
  KKY24432.1  9 IGVDVGGTNTDSVVLHPGQAREpqrgvLGAFKTpTTQDVTHGIVRAIEGAL 59
                58*****************99999555555555888999999999997665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.16
                 EEEE-SSSEEEE CS
                 xxxxxxxxxxxx RF
        FtsA   2 lvDiGagktdva 13 
                 + DiG+++tdv 
  KKY24432.1 296 VADIGGTTTDVC 307
                 78*******986 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.19
                 SSEEEEEEETTEEEE..EEEES--HHHHHHH..........HHHHHT--H CS
                 xxxxxxxxxxxxxxx..xxxxxxxxxxxxxx..........xxxxxxxxx RF
        FtsA   8 gktdvavaedgalvh..lrvigvggngitkd..........iakalrtav 45 
                 ++td++va++++ +    +v ++ ++ it+           ++ a++   
  KKY24432.1 378 TTTDIVVASGKENIGdsDKVQNISSKTITQArlsmkrilenAVDAMKLNA 427
                 78999999998877777788888999999998774444333333434433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (999 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.52
# Mc/sec: 5825.59
//
Query:       KKY24433.1  [L=294]
Description: putative ncs1 nucleoside transporter [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-49  168.3  20.8    2.6e-47  161.6  20.8    2.0  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.6  20.8   1.4e-51   2.6e-47       1     262 [.      29     280 ..      29     287 .. 0.95

  Alignments for each domain:
  == domain 1  score: 161.6 bits;  conditional E-value: 1.4e-51
  Transp_cyt_pur   1 pvpeeeRtwktlnlfsiWlganlnintwvigalglalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvv 95 
                     pv  e+ tw++l+++ +W+  nln + +++g+++la gL +wq+++vi++gn ++ +f +l+++ Ga+ +l fpi+ R++ G +g+ +p+l+r++
      KKY24433.1  29 PVRPERQTWGPLQYVELWFLVNLNMSSYQTGSSLLASGLTYWQAIIVILIGNALASFFAVLNSVSGAQSHLGFPIVCRSVWGMWGAYFPVLNRIL 123
                     7899******************************************************************************************* PP

  Transp_cyt_pur  96 iaivwfgvqawiGsealllmlgkifgk.wleiggailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaeg.G 188
                     + ivw+gvqa+iG++++++ l++i+ +  ++i++a     l           + + i  + ++++r +f  a++lv +  f++l wa++  +  G
      KKY24433.1 124 TSIVWYGVQAVIGGKMIYICLRSIWMDiDDRIPNA-----LP----------AEIGITSAQPQQLRPYFHGASILVFLTLFAILGWAVGTCKDyG 203
                     ************************98777888833.....33..........345666789*****************************9988* PP

  Transp_cyt_pur 189 pvldkavklgkse...lflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaaka 262
                     +v+ + ++++ se    + s++++v+++ a+ iln  DFtr+ak+ ++ +++q  +++l +++++ ig++v+aa++ 
      KKY24433.1 204 TVFTAHTSIASSElgwQMSSGIMSVIGSIASGILNQNDFTRFAKKVEHVTWTQGFSFMLSSSVIACIGVIVTAATQE 280
                     ****9999999999999*********************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1941.75
//
Query:       KKY24434.1  [L=491]
Description: putative guanine deaminase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-63  215.0   0.0    1.3e-62  212.1   0.0    1.9  1  Amidohydro_1  Amidohydrolase family
    7.6e-07   29.0   0.1    0.00032   20.3   0.0    2.6  2  Amidohydro_3  Amidohydrolase family
  ------ inclusion threshold ------
      0.017   14.5   0.0      0.028   13.8   0.0    1.3  1  A_deaminase   Adenosine/AMP deaminase


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.1   0.0   2.2e-66   1.3e-62       2     344 .]      75     488 ..      74     488 .. 0.89

  Alignments for each domain:
  == domain 1  score: 212.1 bits;  conditional E-value: 2.2e-66
                   EEE-EEEEEEECETTECSSS....GHHHHH.................................STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH CS
  Amidohydro_1   2 vlPGlIDaHvHleqsllrga....tledwl.................................vppetaaealesgiktalksGtttvadmgattst 61 
                    +PG+ID+H+H++q++++g     tl++wl                                 +p   a e++ ++i+++l++Gttt+ ++ +++++
    KKY24434.1  75 FFPGFIDTHIHAPQYPNVGLfgksTLLEWLqtytfpmeaslgnpssphydpslrpqpqtpstsDPLARAHEVYTRVIRKTLSHGTTTASYYATNHVP 171
                   58*********************************************************************************************** PP

                   HHHHHHHHHHTSSSEEEEEEESSEGGS..........GCCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEE CS
  Amidohydro_1  62 giealleaaeelplglrilggkvsldr..........gsaetskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpv 148
                   ++++l+  a++   g+r+++g+ ++d+           s+e  +a+  + ++   ++i ++++ +++++++p++ap++   +l ++ ++ k + lp+
    KKY24434.1 172 ATKLLFTLAHQH--GQRAFIGRACMDNpetcpdyyrdPSTEATIANELECISH-SHSI-DPKRTLISPIITPRFAPSCLSRTLTALGDLSKSHSLPI 264
                   ***********8..*********************773334444444444444.2444.58888999****************************** PP

                   EEEETSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHHTSCEEEE CS
  Amidohydro_1 149 aiHaletkgevedaeaafgetiehgthlevaeslglldeiklilahgvhltpteaellkerlkeagvahcpfsnsilrsgrealrkaldeGvkvglg 245
                   ++H++e+ +ev+ +++ f+    + ++ +v++  gll++ +++lah vhl+p+e++l+ +r  +++++hcp+sns l+sg++++r++l++G+ vglg
    KKY24434.1 265 QTHISENLNEVSLVKHLFP---SSSSYASVYDTHGLLTP-RTVLAHAVHLSPSEMKLISQR--QSKISHCPASNSALGSGICPVRELLSQGITVGLG 355
                   *******************...*****************.*********************..********************************** PP

                   EECTTSSCCGGHHHHHHHHHHHHHHCCTT..................TTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECC.CT.. CS
  Amidohydro_1 246 tDgaasgnslnlleelrlalklqrgllye..................deegglslkealrmaTingAkalglddkvGsievGkdADlvvvdl.di.. 321
                   tD ++ g s++lle++r a++++r++  +                  +    ls+ e l +aT  gAk+lgl+++vG+++ G+++D   + l ++  
    KKY24434.1 356 TD-VSGGYSVSLLESVRGACLVSRLVGFTkrslteggeyaneekpdnQIPPPLSVTESLHLATVSGAKVLGLESTVGKFDIGFKFDVQEISLsNSan 451
                   **.*******999995555555555443333444445554444322222235899***********************************9993345 PP

                   ..............CGGGTTTCTSEEEEEEEETTEEE CS
  Amidohydro_1 322 ..............laafvglkkdgnvkkvivkGklv 344
                                  +++v + +d+nv++v+v+G+lv
    KKY24434.1 452 snvdifpwetwqekVEKWVWNGDDRNVRRVWVQGRLV 488
                   57778999**************************997 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.3    0.0016       9.8      11      20 ..      76      85 ..      72      93 .. 0.86
   2 !   20.3   0.0   5.3e-08   0.00032     309     472 ..     301     488 ..     283     489 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0016
  Amidohydro_3 11 lPGFvDsHtH 20
                  +PGF+D H+H
    KKY24434.1 76 FPGFIDTHIH 85
                  7********* PP

  == domain 2  score: 20.3 bits;  conditional E-value: 5.3e-08
  Amidohydro_3 309 r.rlehaegvtesqiervaalqvaagvqpvfnfedelldsrlgperargstpvkellnagvkvalgsD.apvgpfdpwprigaa.vmrktrrgg... 399
                   r  l+ha  +++s+++ +   q  ++ +p++n            + ++g+ pv+ell++g++v lg+D + + ++  + ++++a + ++ +  g   
    KKY24434.1 301 RtVLAHAVHLSPSEMKLISQRQSKISHCPASNS-----------ALGSGICPVRELLSQGITVGLGTDvSGGYSVSLLESVRGAcLVSRLV--Gftk 384
                   446666666677777777777777777777777...........6677889*****************54444444455555441444433..2447 PP

  Amidohydro_3 400 ..............evlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvld........adpldvdppelaear.........vrlt 465
                                    ++   ls++e l+l T  +Ak+lgle + G   +G++ D+  ++         d++  ++ + + ++         vr +
    KKY24434.1 385 rslteggeyaneekPDNQIPPPLSVTESLHLATVSGAKVLGLESTVGKFDIGFKFDVQEISlsnsansnVDIFPWETWQEKVEKwvwngddrnVRRV 481
                   888889****999988899999**********************99**9999998888777777887555555555555555558888888888888 PP

  Amidohydro_3 466 vvdGrvv 472
                   +v+Gr v
    KKY24434.1 482 WVQGRLV 488
                   8888887 PP

>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.6e-06     0.028     229     288 ..     313     368 ..     297     389 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.6e-06
                  HHHHHHHHCT-EEEE-HHHHCCCSST-TTTT-CHHHHHHTT-EEEE--BSCCCCT-SHHH CS
  A_deaminase 229 vLqyllalaqiplevcPlSNvalgafleyaenPlkeflerglnvslntDDPlqfgttLie 288
                    ++l +++q ++  cP+SN al         P++e+l++g+ v l+tD     +++L e
   KKY24434.1 313 SEMKLISQRQSKISHCPASNSAL----GSGICPVRELLSQGITVGLGTDVSGGYSVSLLE 368
                  4478999****************....77889*****************77776666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.55
# Mc/sec: 2711.71
//
Query:       KKY24435.1  [L=1408]
Description: putative patatin-like serine [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-29   99.9   3.5    9.9e-18   64.0   0.0    5.6  6  cNMP_binding  Cyclic nucleotide-binding domain
    9.9e-18   65.1   5.7    5.3e-16   59.4   5.7    3.0  1  Patatin       Patatin-like phospholipase


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.021   1.8e+02       3      32 ..      64      91 ..      62     102 .. 0.78
   2 !    3.9   0.0    0.0061        55      66      87 ..     249     270 ..     236     272 .. 0.89
   3 !   12.1   0.0   1.7e-05      0.15       2      37 ..     571     606 ..     570     619 .. 0.80
   4 !   13.1   0.0   8.3e-06     0.075      41      89 .]     659     707 ..     647     707 .. 0.86
   5 !   64.0   0.0   1.1e-21   9.9e-18       2      89 .]     736     823 ..     735     823 .. 0.96
   6 ?   -3.3   0.0       1.1     1e+04      59      75 ..     950     966 ..     941     967 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.021
                  EE-TT-EEE-TTSB-SEEEEEEES-EEEEE CS
  cNMP_binding  3 sfkagevifrqGdpadslyivlsGevrvyr 32
                  ++ age++  + ++  ++++v+ G v+++ 
    KKY24435.1 64 KLIAGETLMLEEEK--GFCLVVDGLVQIFV 91
                  56689999999999..5***********73 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0061
                   EEESSTEEEEEEEHHHHHHHHH CS
  cNMP_binding  66 vvAltdsellalprddflellq 87 
                   ++A+ ds+++++p+++f++l +
    KKY24435.1 249 ARAVVDSTIAVIPASAFRRLTR 270
                   89****************9975 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 1.7e-05
                   EEE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS CS
  cNMP_binding   2 rsfkagevifrqGdpadslyivlsGevrvyrlsedg 37 
                   + f++g+v+++qG++  ++y+v+ G + v    e g
    KKY24435.1 571 VFFPKGSVLVEQGERNPGIYYVIDGFLDVGLPVEGG 606
                   579************99*********9996444444 PP

  == domain 4  score: 13.1 bits;  conditional E-value: 8.3e-06
                   EEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHHH- CS
  cNMP_binding  41 vlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellqqd 89 
                    +  ++pG l G ++ +   ++ ++v+A+td+++ +lpr++++++++++
    KKY24435.1 659 SVFLVKPGGLAGYIGTISSYRSFTDVTAKTDVHVGFLPRSSIERIVDKY 707
                   566789***********97788899********************9986 PP

  == domain 5  score: 64.0 bits;  conditional E-value: 1.1e-21
                   EEE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHHH- CS
  cNMP_binding   2 rsfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellqqd 89 
                   +++ ag+vi +qGd  ds+yivl G++r +   +dg  +v++++g+G+ +Gel+++t+++r+at+ A+ d+el+++pr  f++l q++
    KKY24435.1 736 VQVNAGQVIHHQGDDSDSIYIVLNGRLRAVMERGDGSLTVTGEFGQGESIGELEVMTESTRPATLHAIRDTELAKFPRTLFNSLAQEH 823
                   5789*************************9999999999999*****************************************99986 PP

  == domain 6  score: -3.3 bits;  conditional E-value: 1.1
                   TS--SSEEEESSTEEEE CS
  cNMP_binding  59 geprtatvvAltdsell 75 
                   ++p+t t++++ d+ ll
    KKY24435.1 950 NAPWTQTCISQADCILL 966
                   57999*********998 PP

>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   5.7   5.9e-20   5.3e-16       1     200 [.    1097    1257 ..    1097    1260 .. 0.89

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 5.9e-20
     Patatin    1 LvlsGGGsrgafslgalkaLkkelgerfdiisGtSaGAiialllalgrdpaalvddlrnlllnkifdrdllirelaanlaarlsgllgkgglfdaea 97  
                  Lvl+GGG+rg++++g+++aL +e+g+ +d+i+GtS+GA++++l+a   d       +++  ++ + + +        ++ + l+ ++ + ++ +++ 
  KKY24435.1 1097 LVLGGGGARGISQVGVIRAL-EEAGIPIDMIGGTSIGAFVGALYAWDADVVP----MYGRAKKFAGRMG-------SMWRFALDLTYPTLSYTTGHE 1181
                  8*******************.********************88888855544....4444444444433.......466699999************ PP

     Patatin   98 lrellrkvladktlkrlsarlgklpllkslftanqavpaittataatastanranglytedddddvdladavraSsafPglfppvsldgelyvDGGi 194 
                  + + + k++++ +++++     +                            +++ + ++++  + + +++ vraS+++ gl pp   +g  +vDGG 
  KKY24435.1 1182 FNRGIFKTFGNSQIEDFWLEYYCN---------------------------TTNISKSRAEIHNSGYIWRYVRASMTLAGLVPPLCDEGSMLVDGGY 1251
                  ******************999999...........................99******************************************** PP

     Patatin  195 lsNvPi 200 
                   +N+ +
  KKY24435.1 1252 MDNLTV 1257
                  ***866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 9149.95
//
Query:       KKY24436.1  [L=248]
Description: hypothetical protein UCRPC4_g02394 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.064   13.4   9.2       0.42   10.8   0.1    2.3  2  zf-C3HC4_4    zinc finger of C3HC4-type, RING
        0.3   11.0  15.3        3.8    7.5   9.3    2.3  2  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
       0.41   10.6  13.7        1.2    9.2   0.1    2.3  2  zf-RING_5     zinc-RING finger domain
       0.52   10.0   8.3       0.15   11.7   2.9    2.2  2  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
        2.2    8.2  14.8        3.7    7.5   0.5    2.2  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00012      0.42       9      26 ..      88     105 ..      85     115 .. 0.83
   2 ?    4.8   4.6     0.009        32       1      24 [.     161     186 ..     161     198 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
  zf-C3HC4_4   9 ekPvsleCGhsfClsCis 26 
                 ekP+ + C+h+ C +C  
  KKY24436.1  88 EKPIRMRCDHVKCKHCPR 105
                 89**************65 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.009
  zf-C3HC4_4   1 CPiCldYLek..PvsleCGhsfClsC 24 
                 C  C  ++e+   v l+C h+ C  C
  KKY24436.1 161 CHECKTFFEQksNVCLNCKHTRCKLC 186
                 778999998633699********999 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.3    0.0017       5.9      14      25 ..      92     103 ..      83     113 .. 0.82
   2 ?    7.5   9.3    0.0011       3.8       1      26 [.     161     187 ..     161     195 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0017
                 E-TTS--B-CHH CS
    zf-C3HC4  14 lleCkHsfCskC 25 
                  + C+H  C++C
  KKY24436.1  92 RMRCDHVKCKHC 103
                 689********* PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0011
                 -TTT-S--SS-E..E-TTS--B-CHHH CS
    zf-C3HC4   1 CpiCleeakepn.elleCkHsfCskCi 26 
                 C+ C++ +++++   l+CkH+ C+ C 
  KKY24436.1 161 CHECKTFFEQKSnVCLNCKHTRCKLCP 187
                 999********9889***********6 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00032       1.2      13      28 ..      88     103 ..      79     110 .. 0.87
   2 ?    3.7   9.0     0.017        62       2      28 ..     161     186 ..     160     195 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00032
   zf-RING_5  13 ekfyltsCgHifCekC 28 
                 ek++ ++C H+ C++C
  KKY24436.1  88 EKPIRMRCDHVKCKHC 103
                 788999********** PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.017
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekC 28 
                 C  C + + +++  + ++C+H+ C+ C
  KKY24436.1 161 CHECKTFF-EQKSNVCLNCKHTRCKLC 186
                 99999999.88888999********99 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.3     0.095   3.4e+02      22      33 ..      93     104 ..      86     112 .. 0.84
   2 ?   11.7   2.9   4.3e-05      0.15       3      34 ..     157     188 ..     155     198 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.095
  Zn_ribbon_17  22 gvCeHvlHasCa 33 
                    +C Hv  + C 
    KKY24436.1  93 MRCDHVKCKHCP 104
                   579999988886 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 4.3e-05
  Zn_ribbon_17   3 llksCayCelavkgrvvlcgvCeHvlHasCar 34 
                    ++sC+ C++  +++  +c +C+H   + C r
    KKY24436.1 157 VRRSCHECKTFFEQKSNVCLNCKHTRCKLCPR 188
                   679*********************88777765 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.5     0.001       3.7      10      26 ..      88     103 ..      84     110 .. 0.80
   2 ?    4.9   8.0    0.0068        24       2      26 ..     161     186 ..     160     193 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.001
  zf-C3HC4_2  10 kdpsvvtpCgHvfCqkC 26 
                 ++p     C Hv C+ C
  KKY24436.1  88 EKP-IRMRCDHVKCKHC 103
                 556.4568********* PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0068
  zf-C3HC4_2   2 CpiCldmlkdpsvvt.pCgHvfCqkC 26 
                 C+ C  ++++ s v  +C+H+ C+ C
  KKY24436.1 161 CHECKTFFEQKSNVClNCKHTRCKLC 186
                 999*****99988877*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1004  (0.0559987); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1711.87
//
Query:       KKY24437.1  [L=311]
Description: putative large neutral amino acids transporter small subunit 1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-15   56.2  11.6      7e-15   54.8  11.5    1.7  1  AA_permease_2  Amino acid permease
    6.9e-14   51.3  13.9    1.2e-12   47.2   2.6    2.1  2  AA_permease    Amino acid permease
  ------ inclusion threshold ------
       0.86    9.9  11.2       0.27   11.6   2.4    2.9  3  DUF3040        Protein of unknown function (DUF3040)


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8  11.5   1.2e-18     7e-15     190     400 ..      26     272 ..       3     297 .. 0.82

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 1.2e-18
  AA_permease_2 190 vllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvilials 283
                    ++ +++++l++++G +++  v+  +k   +d+p+  +++++i++++ + +niaf+ v+p  +i   ++l+ +a  +  +vgg+++ ii ++++ +s
     KKY24437.1  26 YATAIFGALYAYGGSSAVGEVAGDMKDpqRDIPRIVNVCMAITMLSAVSMNIAFFEVLPLQTIR--DRLV-PAVDLGIRVGGPAAGIIYSLVVSMS 118
                    477999******************886669*********************************9..5655.788999999**************** PP

  AA_permease_2 284 llgaintavigssrvlealardgvlPrffakv.....................................n.kfgspiraiiltaivslillllfll 341
                    ++g+in+a+++ +r++ a a+ g++P  f +                                      + +   p++a+ +++++ + l++l+ +
     KKY24437.1 119 AIGSINSALFAGARQYIASAERGYIPAIFDNLhygirtdeliyydntlkglpyfirapiksfarrteklRiEERVPVYAVTISYLLGS-LYILVGT 213
                    **************************99999999999999999999999999999999999999888776677789999999999994.4555543 PP

  AA_permease_2 342 assaaynfllsvsslgliisyllliigalilrkkrphlkr.....pgkilvaiigalfllfllv 400
                         +n     + ++   ++ll+++g+++lr+ +++        +++++v+ +  l++++++ 
     KKY24437.1 214 -----FNGFIVFGGIATSMFNLLMVAGLFKLRRANKEGDAtlpltYRAWTVNPVLYLLITLIVT 272
                    .....7878888888888899***************8855577766678888866433333322 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   2.6   2.1e-16   1.2e-12     192     330 ..      17     149 ..       3     152 .. 0.85
   2 !    9.7   3.7   4.7e-05      0.28     334     430 ..     191     278 ..     175     303 .. 0.78

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 2.1e-16
  AA_permease 192 keeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvla 289
                  +++ ga+   + ++  ++ a+ G ++v+ +ag++kdP+++iP+ ++  + +++++ v + ++   ++p +    + d ++   p v  +   g ++++
   KKY24437.1  17 SSSFGALGHYATAIFGALYAYGGSSAVGEVAGDMKDPQRDIPRIVNVCMAITMLSAVSMNIAFFEVLPLQT---IRDRLV---PAVDLGIRVGGPAAG 108
                  455667777888999999*************************************9988777777777666...333443...58999********** PP

  AA_permease 290 plinaviltaalssansslysasRvlyslakdglaPkvlkk 330
                   +  +v+ ++a++s+ns+l+++ R++ + a++g++P+++++
   KKY24437.1 109 IIYSLVVSMSAIGSINSALFAGARQYIASAERGYIPAIFDN 149
                  *************************************9986 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 4.7e-05
  AA_permease 334 rgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillila 430
                  ++vP+ a+++s++++ l +l+  +n          + + ++++ +  ll+ + + ++R+a +++g ++  l ++a++++  ++l ++++++++ ++a
   KKY24437.1 191 ERVPVYAVTISYLLGSLYILVGTFNGF--------IVFGGIATSMFNLLMVAGLFKLRRA-NKEGDATLPLTYRAWTVNPVLYLLITLIVTLAGMAA 278
                  589999999999999999977666655........5556666655555666677789999.88899999********************99986655 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.6   9.6e+03      41      53 ..      57      69 ..      43      78 .. 0.45
   2 ?    3.2   0.7     0.018   1.1e+02      43      77 ..     192     225 ..     177     238 .. 0.48
   3 ?   11.6   2.4   4.5e-05      0.27      40      82 ..     253     296 ..     237     297 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.6
     DUF3040 41 lrrlavlavllfv 53
                 +r + +++++ +
  KKY24437.1 57 IPRIVNVCMAITM 69
                3332222222222 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.018
     DUF3040  43 rlavlavllfva.GllllvlGvaaaavvlgvvGfvv 77 
                 r+ v av +  + G l +++G+ +  +v+g  G+++
  KKY24437.1 192 RVPVYAVTISYLlGSLYILVGTFNGFIVFG--GIAT 225
                 334444444444488888888766653332..2222 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 4.5e-05
     DUF3040  40 slrrlavlavllfvaGllllvlGvaaaa.vvlgvvGfvvmlagv 82 
                   r ++v +vl +++ l++ ++G+aa+  + ++v+ fvvm  +v
  KKY24437.1 253 TYRAWTVNPVLYLLITLIVTLAGMAAHPyLSVAVLAFVVMGYLV 296
                 467789*****************666655999999**9997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2065.86
//
Query:       KKY24438.1  [L=154]
Description: putative thioesterase family [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-13   51.5   0.2    1.3e-13   51.0   0.2    1.2  1  4HBT      Thioesterase superfamily
  ------ inclusion threshold ------
       0.12   12.5   0.0       0.21   11.7   0.0    1.5  1  DUF4442   Domain of unknown function (DUF4442)


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.2   1.5e-17   1.3e-13       2      79 .]      50     127 ..      49     127 .. 0.97

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 1.5e-17
                 SSB-HHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEEEESS-.BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCEEE CS
        4HBT   2 GvvhgGvylallDeaagaalrslggrgilvvvvelsidflrp.vrlgdeltvearvlrlgrtsavvevevrdedgrlva 79 
                 G++hgG++++++D ++++a++s+g+  +  v  +l++++l + +++gd+++ e+ + + g+t a+++v++ d+++++va
  KKY24438.1  50 GILHGGTIASMVDLGGSLAVASRGLY-STGVSTDLNVTYLGSgGKIGDTIRGEVLCDKFGKTLAYTSVRFMDKNDVTVA 127
                 9************************9.***************9*******************************99875 PP

>> DUF4442  Domain of unknown function (DUF4442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.3e-05      0.21      21      85 ..      25      88 ..      24     135 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.3e-05
                -EEEEEETTEEEEEE---GGGB-TTSSB-HHHHHHHHHHHHHHHHHHHS-TTEEEEEEEEEEEE- CS
     DUF4442 21 prieelepgraevrlkkrrrvrNhigtvHAiAicnlaElamGllaeatlpdthrwipkgmevdYl 85
                +r++  +pg+++ +l   + + N +g +H++ i+++++l    la a+ +     + +  +v Yl
  KKY24438.1 25 LRVTGASPGKVNFELDIEKHHTNRLGILHGGTIASMVDLGG-SLAVASRGLYSTGVSTDLNVTYL 88
                5788999*******************************964.45555555555556666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.31s 00:00:00.79 Elapsed: 00:00:00.49
# Mc/sec: 939.82
//
Query:       KKY24439.1  [L=494]
Description: putative tfiih and nucleotide excision repair factor 3 complexes subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.7e-131  437.8   0.0   3.5e-131  437.4   0.0    1.2  1  Tfb2          Transcription factor Tfb2
    1.3e-21   76.7   0.2    3.1e-21   75.6   0.2    1.7  1  Tfb2_C        Transcription factor Tfb2 (p52) C-terminal doma
    0.00014   22.0   0.4    0.00033   20.8   0.2    1.8  2  Helicase_C_3  Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> Tfb2  Transcription factor Tfb2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  437.4   0.0  5.9e-135  3.5e-131       1     355 []      10     383 ..      10     383 .. 0.96

  Alignments for each domain:
  == domain 1  score: 437.4 bits;  conditional E-value: 5.9e-135
        Tfb2   1 eyleklpettlerLYkspatclaif.rlLpslakqlvmrllylekpvplsdlekwvkkeskkekeealkkLkelhilkekklkekkqelklnptFkksl 98 
                 eyle+lp+t++ rLY++p+++laif + L++lak++vm+lly++ p+p+ +le+wvk+es+ ek+ a++ L+++hi++++++  ++++++++++F++sl
  KKY24439.1  10 EYLETLPGTEFFRLYQHPSSVLAIFrKRLTDLAKTFVMALLYMPVPLPVVNLEAWVKPESTGEKDFAIDLLHRYHIFQTSNV-AGQRSYSITENFANSL 107
                 7************************888*************************************************99877.4457************ PP

        Tfb2  99 rkaltgggeeksfgvpseeedkekvdvefLdkyakekWesilhflvgseee......eepskevlelLkasglveekeskkslkItseGFqFlLqdina 191
                 ++altggge++sfg  +++++ e +dv++Ld++a+++We il ++vg+++        +ps+ v+elL+a++l+e  ++ ++++It+eGF+F+L+d+n+
  KKY24439.1 108 KQALTGGGEHESFGAVATTAEAEGIDVADLDNFARNQWEGILGYMVGNSSLplettaVQPSNAVKELLRAGHLIEIGSD-RQPRITKEGFAFVLHDVNT 205
                 **************888888999************************999899999867***************99988.89***************** PP

        Tfb2 192 QiwtlllqylkaleergmdlvevlsflfqLsslelgkaYsvealsetqkemledLrdlGLvyqrkkkskrFypTrlattLts...............ss 275
                 Q+w ll+ y++++e  gm++vevlsflf+++slelg aYs ++ls+t++++l+dL+d+G+vyq+++ s++F+pTrla+tLts               s 
  KKY24439.1 206 QVWALLFLYVDNAEYLGMSKVEVLSFLFMVASLELGLAYSKQNLSQTRLSILSDLADFGIVYQKSS-SAHFFPTRLAVTLTSdsasalasvsaslssSL 303
                 ***************************************************************875.558*************************9866 PP

        Tfb2 276 sessseskeegfiivETNfrvyAYtssplqialLslFvklkyrfpnlvvgkitresvreAlknGItadqIisyLeshahp 355
                 + sss++  +gfii+ETN+rvyAYtssplqialL lFv+l++r+pnlv+gk+++ sv++A++nGItadqIisyL+shahp
  KKY24439.1 304 RPSSSNTGGKGFIIIETNYRVYAYTSSPLQIALLGLFVNLRSRHPNLVTGKMSKRSVQRAVQNGITADQIISYLSSHAHP 383
                 678888999**********************************************************************8 PP

>> Tfb2_C  Transcription factor Tfb2 (p52) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.2   5.2e-25   3.1e-21       1      68 []     419     484 ..     419     484 .. 0.95

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 5.2e-25
      Tfb2_C   1 DQIrLWekernRlkaeegvlyddFesqadfeevleyakelgvllwedeekrllvvkeeghesvkefik 68 
                 DQI LW+ er+R++a+ g+l++dF++qa f+  ++ya ++gvl+w+de+kr+++v++  ++ + ++++
  KKY24439.1 419 DQINLWQLERDRMTATSGYLFKDFDTQAAFDGPCQYADSMGVLVWKDEKKRMFFVSR--MDVIAHYMR 484
                 9*******************************************************9..777777765 PP

>> Helicase_C_3  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       2.5   1.5e+04      49      69 ..     216     236 ..     215     240 .. 0.76
   2 !   20.8   0.2   5.5e-08   0.00033      23      75 ..     335     384 ..     316     416 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2.5
  Helicase_C_3  49 rrAldaGltaeeiiefLerls 69 
                    +A   G+++ e+++fL  ++
    KKY24439.1 216 DNAEYLGMSKVEVLSFLFMVA 236
                   578888999999999986555 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 5.5e-08
  Helicase_C_3  23 aaLaafAelesrpehahtyrltplSlrrAldaGltaeeiiefLerlskypvPq 75 
                   a L  f +l sr  ++ t ++++ S++rA++ G+ta++ii++L+++++   Pq
    KKY24439.1 335 ALLGLFVNLRSRHPNLVTGKMSKRSVQRAVQNGITADQIISYLSSHAH---PQ 384
                   4577788888888899999***************************98...55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3215.05
//
Query:       KKY24440.1  [L=305]
Description: hypothetical protein UCRPC4_g02398 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 1925.70
//
Query:       KKY24441.1  [L=1183]
Description: putative mating-type switching protein swi1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-86  288.5   0.2    1.1e-85  287.3   0.2    1.7  1  TIMELESS    Timeless protein
    2.8e-33  115.9  11.3    2.8e-33  115.9  11.3    4.4  4  TIMELESS_C  Timeless protein C terminal region


Domain annotation for each model (and alignments):
>> TIMELESS  Timeless protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.3   0.2   1.2e-89   1.1e-85       1     275 [.      38     305 ..      38     306 .. 0.94

  Alignments for each domain:
  == domain 1  score: 287.3 bits;  conditional E-value: 1.2e-89
    TIMELESS   1 kYklgddclecLkdLkrwlrl.DdddnrrdvaralaeakilqndLipiLiqweek......kkklalaclrLlvaLTwPlelleeeeeteeqtahytql 92 
                 kY+lgdd+l+cL+dLkrwl+l D++ nr dvar+laea++++ dL+piL++w+++      ++++ala+l+Llv+LTwPle ++e+  t+++++h+++l
  KKY24441.1  38 KYVLGDDALACLRDLKRWLKLyDEKLNRLDVARCLAEANLVNGDLLPILASWQADevnntvRARIALAVLELLVPLTWPLETASEM--TQNHHRHIPYL 134
                 6*****************************************************9887766666*****************96666..*********** PP

    TIMELESS  93 kkalleyKaailseekgkvlkalvrlllevlakdreerterdegiieliLtLiRNilaiedpqekeksasskkeddilhskliealeesgvldllltla 191
                 ++a++ yKa +l ++++ +l+++vr+ l+++a++++ert+rdegii+l+L+ iRNi+ai+      +  s++ e++ ++s++ie +  ++v+ l+lt++
  KKY24441.1 135 QQAQVLYKAGLLGHDTASILRTIVRVGLPSIATPQKERTNRDEGIIKLMLYSIRNIAAINIV---PNIPSQGLENEVSRSATIEGFRFQDVFALILTIC 230
                 ***********************************************************999...88888999999*********************** PP

    TIMELESS 192 ssigkefeqeqfnllllEiiylllkgqdpeeLakesekesrstkeasrasdelskllekekakkkasikknastRHsrFggtls 275
                 s++g++f+q+  ++++lEi+++l+kg+d+e+L+    +e +++k+  ++++el+++l+ke++++++++k  a+tRH+rFg++++
  KKY24441.1 231 SNMGEDFDQQ--DVIVLEILFHLTKGVDAEKLF---LTE-EQQKV--QKTSELKDILSKERSMQRDYAK-IAPTRHGRFGTMIW 305
                 ****999888..*********************...333.23333..5889*****************5.67**********99 PP

>> TIMELESS_C  Timeless protein C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1     0.081   7.3e+02     251     343 ..     332     427 ..     305     451 .. 0.69
   2 ?   -2.9   1.4      0.32   2.9e+03     376     412 ..     562     603 ..     555     617 .. 0.51
   3 !  115.9  11.3   3.1e-37   2.8e-33       2     349 ..     649    1051 ..     648    1057 .. 0.82
   4 ?   -5.9  11.4         2   1.8e+04     437     566 .]    1059    1183 .]    1052    1183 .] 0.43

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.081
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHCHHHHHHTTSHHH....HHHHHHHHHHHHHHHTST.TS---EEE---SHHHHHHHT-HHHH CS
  TIMELESS_C 251 edpeeeeekPeskpeeeekrqsarqeeesvtikaeelrkqlkseklrsa....lewlqscLiraaeDeEedveadqavpLvplteeqeeameneqfq 343
                  d     +kP++k ++e++    + +   ++ +a e  + + +e l s      + l++ + r a+ + ++ +  q  + v+ +++ e a+++ q +
  KKY24441.1 332 MDKSKKFNKPKQKMKDEHHTIYDFDKTVHLNRQASESLRMFTEEFLDSGfnplFAHLRKAIAREAD-RIQELNVRQYFYVVAWFLKAERARRDWQKK 427
                 344444458999999999888888888888888877777777776555411114566666666664.555558999999999999999999998865 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.32
                 HHHT-XXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXX CS
  TIMELESS_C 376 rakiLaeeeeered.....elkddedgeeadeseeeedllek 412
                 r++  a + +e +      +  d++d+++ +e+e+  d ++ 
  KKY24441.1 562 RSRRRARRRKEANRaagtgKEMDGVDDDQRSEDEDAIDTAQV 603
                 444444433222222244455666777775555555554433 PP

  == domain 3  score: 115.9 bits;  conditional E-value: 3.1e-37
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  TIMELESS_C    2 LhRiaydlemaalLFqlsllrlFqrilsepkavas.....keleelvkqlvrkllkkaevnpklfvELLFsKntsearelesgYekaevestskrae 93  
                  ++R+a+++++a+lL++++++ lF+r++++p++ +      +e+eelv+q+++k++kk+  +p l +ELLFsK++++ ++le g+ek++++ ++   e
  KKY24441.1  649 FYRVAFKQDLAVLLYRVDIISLFYRMIKGPEGLDPhnkmfREWEELVRQVLKKMFKKISERPELVTELLFSKINATLFYLEFGHEKQTSHPMRTTTE 745 
                  9*******************************99889999************************************************866655555 PP

                  XXXXX.XXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.................................. CS
  TIMELESS_C   94 vwsee.eeaelreLylankdv.keedkdvvewilesLadaarereavikklkdlGladkakdiisvKS............................. 159 
                   + +  + +   ++ ++++++   ++   v w+ +sL+ a +er+ ++ +        ++++   + S                             
  KKY24441.1  746 LEVKGiNRTLDDKIAIVVAALdSSKKMYFVSWVRRSLELAVDERKSWEAEALARKEMTEQPNT--DASeaqgatdvqiplpppfgeadaniveenhr 840 
                  5555414456678899*****55666678******************9987664444444443..33334578899999999999999999999999 PP

                  ..................XXXXXXXXXXX...XXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX..XXXXX CS
  TIMELESS_C  160 ................Aqsrkakrrlllt...sdedlelksly...eeerdeddvLekllkeiagkrSkaqv.vkkLlqlglvaekrelleakkkrk 233 
                                   ++r+ak+rll+t    ++  + +++      + ++ + L   l   + + S+ q   +   ++ l  ++++++  k+ + 
  KKY24441.1  841 anivivvkprddedimEMNRNAKLRLLMTlvgMEKTHSAADVItwsFPSTLSSEQLFATLSILDKHMSNPQTeFDGYEPAALLRRANAIE-HKEPQS 936 
                  99999999999999988999999999999876555666666664555678889999999*******999775267799999999999998.555555 PP

                  XXXXX.XXXXXXXXX.XXXXXXXXXXX....XXXXXXXXXXXXXX.XXXXXXXXXXXXXHCHHHHHHTTSHHHHHHHHHHHHHHHHHHTST.TS--- CS
  TIMELESS_C  234 krkpk.kdveeeged.dfaedpeeeee....kPeskpeeeekrqs.arqeeesvtikaeelrkqlkseklrsalewlqscLiraaeDeEedveadqa 323 
                   +     d   + e+ d  e+  + ++      ++ +ee++kr +  + + e+v+    e+r+++++e   ++   ++s L+ +a+D E d e d+ 
  KKY24441.1  937 STLTGfID--DDTEGtDAGEEFLFPNNlrtrTDHDGSEEVKKRRLiRKRKAEPVDDVVIEERRRAREEAALARRRAIKSELYIHASDDETDEERDR- 1030
                  55555345..444445678888898888775566778999999984567789999999999******************************99***. PP

                  EEE---SHHHHHHHT-HHHHHHHHHH CS
  TIMELESS_C  324 vpLvplteeqeeameneqfqrvlkaL 349 
                        ++e+e  ++++q + vl aL
  KKY24441.1 1031 -----TFFELEALRRQKQAKNVLSAL 1051
                  .....9*****************999 PP

  == domain 4  score: -5.9 bits;  conditional E-value: 2
                  XXXXXXX..................XXXXXXXXX...XX...................................................XXXXXXX CS
  TIMELESS_C  437 aPkkkdkdilfeelrakkkrkiklgtnseeEeddialdeneedsrassgEledndqd...skdaaeaeddleiddnkalqrarekdeissdrdnadd 530 
                   Pk ++    +  +  k+k ++ +  ++++   d+       d   s+ ++ed  ++   s + +e+eddl  +d   l      ++++ +   +++
  KKY24441.1 1059 DPKHHKSSAKGTSKSHKRKGQTISEDDDDNNTSDTDSGS-ILDPEISLSDEEDLTKEtpiSSQVNESEDDLILEDK-IL-----RQDVQHEITSKPA 1148
                  466665544444455555555555444444444422222.223333444444433333444445555555544332.22.....2222222222222 PP

                  X.XXXXXXXXXXX....................XXX.XXX CS
  TIMELESS_C  531 g.alprkkkdkreraeakvdlePakRRrLk...vvedddE 566 
                    ++ ++++d+     +      a RRrL+   vv++d+E
  KKY24441.1 1149 ViSANDIEEDSDG---DMARM--APRRRLRagfVVDSDEE 1183
                  2033333333333...22233..448899999****9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1039  (0.0579508); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.51
# Mc/sec: 7012.17
//
Query:       KKY24442.1  [L=295]
Description: putative flocculation suppression protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-30  105.4   1.5    1.8e-30  105.4   1.5    2.0  2  HSF_DNA-bind  HSF-type DNA-binding
     0.0065   16.9   0.0       0.11   13.0   0.1    2.4  2  Ets           Ets-domain
  ------ inclusion threshold ------
        8.4    6.8   7.5         19    5.7   0.1    2.2  2  NUDE_C        NUDE protein, C-terminal conserved region


Domain annotation for each model (and alignments):
>> HSF_DNA-bind  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   1.5     3e-34   1.8e-30       1      96 []      84     183 ..      84     183 .. 0.97
   2 ?    0.4   0.1      0.17     1e+03      20      53 ..     239     272 ..     222     273 .. 0.61

  Alignments for each domain:
  == domain 1  score: 105.4 bits;  conditional E-value: 3e-34
                   HHHHHHHHHCT...TTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTB--TTSEEEEE..SS--XXXXXXXXX CS
  HSF_DNA-bind   1 FlkkLyklled...eelisWsedgksfvvkdkeefakevlpkyfkhsnfssFvrqLnlYgFrkvkrkeekkkkkskvweFsh..enFkrgkpelLkk 92 
                   F++kLy++led   ++lisWs++++sfv+++++ef+k vl +yfkh+n+ssFvrqLn+YgF+kv++  +  + +s+ weF+h  +nFk+g+   L++
    KKY24442.1  84 FIHKLYNMLEDksiQHLISWSNTNESFVMSPSNEFSK-VLAQYFKHTNISSFVRQLNMYGFHKVSDVFHGGSPDSTLWEFKHgnGNFKKGDLVGLRE 179
                   9********99888899*******************9.9*******************************************999************ PP

                   XXXX CS
  HSF_DNA-bind  93 ikrk 96 
                   ikr+
    KKY24442.1 180 IKRR 183
                   **97 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.17
                   SSSEEEES-HHHHHHHTHHHHSTT.--HHHHHHHH CS
  HSF_DNA-bind  20 dgksfvvkdkeefakevlpkyfkh.snfssFvrqL 53 
                   +++s++  + +++++  ++k f+  ++++ F+r +
    KKY24442.1 239 ESNSIMTAKVQALSE-NMNKCFQWnNSLAQFIRAM 272
                   344555555555555.4666777624578898865 PP

>> Ets  Ets-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   1.8e-05      0.11       6      52 ..      88     131 ..      83     149 .. 0.77
   2 ?    0.8   0.0      0.11   6.7e+02       2      24 ..     265     285 ..     264     294 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.8e-05
         Ets   6 llelLedpskssiiaWtdkeegeFklvdpeevarlWgkrknkpkmny 52 
                 l+++Led+s +++i+W +  + +F ++ ++e+++   ++ +++  n+
  KKY24442.1  88 LYNMLEDKSIQHLISWSNT-NESFVMSPSNEFSKVLAQYFKHT--NI 131
                 6789*************88.99*****9999998876665443..34 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.11
         Ets   2 LwqFllelLedpskssiiaWtdk 24 
                 L qF+++++ dp++   i  +++
  KKY24442.1 265 LAQFIRAMIPDPEH--PIHREGR 285
                 88*********954..4555555 PP

>> NUDE_C  NUDE protein, C-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   3.1     0.015        89      73     129 ..       8      63 ..       1     124 [. 0.62
   2 ?    5.7   0.1    0.0031        19      57     151 ..     181     276 ..     175     294 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.015
      NUDE_C  73 lsspstpqsleiekrspavqasssPviatppekslsslatgsetatppsPpasess.d 129
                  +s+ +p++  ++ +sp+ +a   P+i+++pe   + +++g+++++ ps     s+ +
  KKY24442.1   8 ATSSESPKTDPMDITSPT-TAMGPPIINSSPEMG-HGATNGGANGSDPSQGSNASPsQ 63 
                 244444544333334443.333899999999998.56666777788877665555442 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0031
      NUDE_C  57 klrkaeeklrrrkplslsspstpqsleiekrspavqasssPviatppekslsslatgsetatppsPpasessdllrkvlaltsklar.qrasisds 151
                 k r+  ++l +r  +s ++ps +q  + +++ p+++ +     ++ + +    la+++e+++  +  ++  s++++k  + + +la+  ra+i+d 
  KKY24442.1 181 KRRASRHALIHRDSFSAHKPSVSQPGTPAEAMPDTTETRLMHLEHNLYEIHARLARADESNSIMTAKVQALSENMNKCFQWNNSLAQfIRAMIPDP 276
                 334434446778899999999999999999999988853333333333333488888999*********************999998458888884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2113.22
//
Query:       KKY24443.1  [L=557]
Description: hypothetical protein UCRPC4_g02401 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00049   20.4   1.1     0.0011   19.3   1.1    1.5  1  DnaJ_CXXCXGXG  DnaJ central domain
  ------ inclusion threshold ------
        1.8    8.5   4.3        6.2    6.9   4.0    2.0  2  Anti-TRAP      Tryptophan RNA-binding attenuator protein inhi


Domain annotation for each model (and alignments):
>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   1.1   1.2e-07    0.0011       1      28 [.     451     478 ..     432     494 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.2e-07
  DnaJ_CXXCXGXG   1 CkkCkGsgakkgkkktCktCkGsGvvre 28 
                    C+kC+G+g+++  +  C++C+GsG+ ++
     KKY24443.1 451 CSKCDGKGTTPMGRFICRQCGGSGESQK 478
                    8888888877766666888888884333 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.5   0.00073       6.5      26      43 ..     444     461 ..     431     464 .. 0.59
   2 ?    6.9   4.0    0.0007       6.2       6      40 ..     444     474 ..     439     479 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00073
                 ......E-TTTTTSSEEE CS
   Anti-TRAP  26 eprasleCPkCsGkglip 43 
                  p+ s +C kC Gkg  p
  KKY24443.1 444 RPKLSTDCSKCDGKGTTP 461
                 455666677777776554 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0007
                 HHHCEEE-TTTTTTSEETTE......E-TTTTTSS CS
   Anti-TRAP   6 lpeLEtkCdaCngsGkiepeeprasleCPkCsGkg 40 
                  p L t C +C+g G  +       + C +C+G g
  KKY24443.1 444 RPKLSTDCSKCDGKGTTPMG----RFICRQCGGSG 474
                 58999*********987655....89999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3813.29
//
Query:       KKY24444.1  [L=233]
Description: hypothetical protein UCRPC4_g02402 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-26   92.2   2.9    4.1e-26   92.2   2.9    2.0  2  DUF3245   Protein of unknown function (DUF3245)


Domain annotation for each model (and alignments):
>> DUF3245  Protein of unknown function (DUF3245)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   2.9   2.3e-30   4.1e-26       2     149 .]      18     164 ..      17     165 .. 0.82
   2 ?   -1.4   2.7      0.17     3e+03      87     139 ..     212     223 ..     170     232 .. 0.40

  Alignments for each domain:
  == domain 1  score: 92.2 bits;  conditional E-value: 2.3e-30
     DUF3245   2 anvalarsqkLvasWlpketaeeqsdekktdeelqkeedeiftavpetlGlGAklptkaadgswnreeldsndklrrqllgKnykkvmaekekaea..k 98 
                 a +al+ sq+L+asWlp++ta e+ +   t+e+l ke +e f+ vpetlGlGA+ pt  +   + +  l+ ndkl+rql gK ++k+ ++k+  +a  +
  KKY24444.1  18 ASIALSNSQRLIASWLPPKTAAENLNH-ITEEQLDKEDEEDFKVVPETLGLGASAPTDGNLLRSMKGSLTANDKLKRQLFGKDWNKIGSQKHYQNArpR 115
                 789***********************9.*****************************9999888999********************999876555115 PP

     DUF3245  99 kpvnaskrkaakvkkeakekakea..kdddddddedesRskavgkkssskKrk 149
                 ++ n+ ++++++v+ +ak  a +    +  d++d++ +Rs++ gk    kKrk
  KKY24444.1 116 ATPNQFSQSRNHVAPKAKPDARQSlgVRGGDNSDDEGGRSSL-GKS---KKRK 164
                 666777777777777776655433114556777777899988.744...5654 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.17
     DUF3245  87 kvmaekekaeakkpvnaskrkaakvkkeakekakeakdddddddedesRskav 139
                  + +e                                          s+ k+ 
  KKY24444.1 212 ELLSE-----------------------------------------RSKKKKK 223
                 11111.........................................2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       918  (0.051202); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.34s 00:00:00.86 Elapsed: 00:00:00.51
# Mc/sec: 1387.70
//
Query:       KKY24445.1  [L=443]
Description: putative succinylligase beta-chain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      8e-78  260.6   0.5    1.4e-77  259.8   0.5    1.4  1  ATP-grasp_2  ATP-grasp domain
    1.7e-23   83.1   1.0    2.3e-23   82.7   0.1    1.7  2  Ligase_CoA   CoA-ligase
    1.1e-07   31.6   0.1    3.1e-07   30.1   0.1    1.8  1  ATP-grasp_5  ATP-grasp domain
  ------ inclusion threshold ------
      0.022   14.6   1.1       0.26   11.1   0.2    2.4  2  GARS_A       Phosphoribosylglycinamide synthetase, ATP-grasp 


Domain annotation for each model (and alignments):
>> ATP-grasp_2  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.8   0.5   3.2e-81   1.4e-77       2     201 ..      35     241 ..      34     242 .. 0.99

  Alignments for each domain:
  == domain 1  score: 259.8 bits;  conditional E-value: 3.2e-81
                  E-HHHHHHHHHCTT----SEEEESSHHHHHHHHHHHTSSSEEEEE--SSSTCCCT.......TCEEEESSHHHHHHHHHCCTTSEEE-TTS-TT-EEE CS
  ATP-grasp_2   2 lhEyqakeilakygvkvpegevaesaeeaeeaakklgekelvvKaQvlaGGRGKa.......gGvklvkskeeakeaakellgkelvtkqtgkeGkkv 92 
                  +hEy +  il++yg+ vp geva++a+eae++akk+g++++v+KaQvlaGGRGK+       gGv++++s++eak++a +++g++l+tkqtg++G+++
   KKY24445.1  35 IHEYLSAGILKSYGIGVPAGEVAKTADEAEAVAKKIGGDDMVIKAQVLAGGRGKGsfdnglkGGVRVIYSPTEAKMFAGQMIGHKLITKQTGARGRIC 132
                  8************************************************************************************************* PP

                  --EEEEE---ECEEEEEEEEEETTTTEEEEEEESSTTS-HHHHHHH-GGGEEEEEEBTTTB--HHHHHHHHHHCT--CHHHHHHHHHHHHHHHHHHHT CS
  ATP-grasp_2  93 ekvlveealdikkElYlsivlDraskkvvviaSseGGvdiEevaakkPekiikvaidpakglkeeqareiakklglekelvkkaakiikklyklfvel 190
                  + v+++e+   ++E+Yl+i++Dr ++++v++aSs+GG+diE+va+++Pe+ii ++i++++g+++e ar+ia++lg++++++++a+++i+klyk+f+e+
   KKY24445.1 133 NSVYICERKFARREFYLAILMDRGTQSPVIVASSQGGMDIETVAKETPEAIITTPINIHEGVTDEIARNIATELGFSDQCIEDAKDTIQKLYKVFMER 230
                  ************************************************************************************************** PP

                  TEEEEEEEEEE CS
  ATP-grasp_2 191 datlvEiNPLv 201
                  dat++EiNPL+
   KKY24445.1 231 DATQIEINPLS 241
                  *********97 PP

>> Ligase_CoA  CoA-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       2.1   9.5e+03      92     104 ..      53      65 ..      48      81 .. 0.57
   2 !   82.7   0.1     5e-27   2.3e-23       1     152 [.     301     420 ..     301     421 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.1
                 HHHHHHHHHHTT. CS
  Ligase_CoA  92 aaellkaikeaka 104
                 a+e++k++ ea+a
  KKY24445.1  53 AGEVAKTADEAEA 65 
                 5555555555543 PP

  == domain 2  score: 82.7 bits;  conditional E-value: 5e-27
                 EESSHHHHHHHHHHHHHT..............T--BSEEEE-TSS--..........HHHHHHHHHHHHS-TT-SEEEEEEEESSSEHHHHHHHHHHHH CS
  Ligase_CoA   1 lvnGGtLayeamdlikealgdvasnkklknvlgseqheiidlGddaftkGrpHPmiDptkriealkklaadpevkvilldivlGygahedpaaellkai 99 
                 lvnG++La+++md+ik++              g+ +++++d+G++a+          p+++  a+  +++dp+v +i+++i++G+++++ +a++l++ +
  KKY24445.1 301 LVNGAGLAMATMDIIKLN--------------GGSPANFLDVGGGAT----------PEAIRSAFDLITSDPKVTAIFVNIFGGIVRCDAIAQGLINVV 375
                 79****************..............***************..........9***************************************** PP

                 HHTT...--S-EEEEEECTTHH.....HHHHHHHTTTSSEEE-SSHHHHHHHH CS
  Ligase_CoA 100 keakaegrelpvvarvaGteadpqelseqakaleeagveiasskaqalraaka 152
                 ++++    + p+v r++Gt+ +     ++ + ++++g++i s ++ +++a+k+
  KKY24445.1 376 QQMN---LRTPIVCRLQGTNME-----KAHQLINDSGLKIFSIEDLQSAAEKS 420
                 ***8...***************.....9*****************99999886 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.1     7e-11   3.1e-07      10     219 ..      35     254 ..      25     256 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 7e-11
  ATP-grasp_5  10 Lteaeakelleaygipvvetrlassaeeaveaaeeigyp.vvlKivs......pdilhKtdvgGvrlnlkdaeevraaaeeile.rvkekspearieg 99 
                    e+ ++ +l+ ygi v+   +a++a+ea ++a++ig   +v+K ++      ++       gGvr+ + ++ e +  a +++  ++ +k+ +ar + 
   KKY24445.1  35 IHEYLSAGILKSYGIGVPAGEVAKTADEAEAVAKKIGGDdMVIKAQVlaggrgKGSFDNGLKGGVRV-IYSPTEAKMFAGQMIGhKLITKQTGARGRI 131
                  56788999****************************8888*****99766666667788889*****.999999999888877515555555555444 PP

  ATP-grasp_5 100 vl.Vqemakr.ggrElivgvteDp.vFGpvilf.GlGGtavevlkdvavalpplnstlareliertkaskllkgvrgekkadlaaleellvrlsqLvv 193
                  +  V   +++ + rE+ + +  D  +  pvi+   +GG+ +e +++ + +    +  +++e +    a +++++   +    ++  ++++++l +  +
   KKY24445.1 132 CNsVYICERKfARREFYLAILMDRgTQSPVIVAsSQGGMDIETVAKETPEAIITTPINIHEGVTDEIARNIATELGFS-DQCIEDAKDTIQKLYKVFM 228
                  332333333348889888888886245777765167***************99**********999999999999999.8899*************** PP

  ATP-grasp_5 194 dlpeIreldinPllvee.egvvalDar 219
                  +    ++++inPl  ++ ++v+++Da+
   KKY24445.1 229 E-RDATQIEINPLSETSdHQVLCMDAK 254
                  9.7889*******9988455*****97 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   5.7e-05      0.26       9      53 ..      43      87 ..      37     164 .. 0.90
   2 ?    1.9   0.0     0.038   1.7e+02      10      63 ..     375     430 ..     372     435 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.7e-05
                HHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT- CS
      GARS_A  9 llkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKg 53
                +lk +gi  +  e+ + ++ea+++ ++ + + +V+Ka+ la+g+g
  KKY24445.1 43 ILKSYGIGVPAGEVAKTADEAEAVAKKIGGDDMVIKAQVLAGGRG 87
                789999************************************987 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.038
                 HHHTT--B--EEEES..SHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHH CS
      GARS_A  10 lkkagiptaeyeaft..dpeeakeyieeatakalVvKadglaagKgvivakseeea 63 
                 +++++++t+    ++  ++e+a++ i++ + k++ + +   aa K v   k ++ a
  KKY24445.1 375 VQQMNLRTPIVCRLQgtNMEKAHQLINDSGLKIFSIEDLQSAAEKSVQFSKVVKMA 430
                 667777777554443239****************************9988766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 2754.73
//
Query:       KKY24446.1  [L=669]
Description: putative biotin apo-protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.5e-150  499.9   0.0   5.9e-150  499.5   0.0    1.1  1  BPL_N          Biotin-protein ligase, N terminal
      1e-07   31.9   0.1    9.6e-07   28.8   0.1    2.3  1  BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family
    5.3e-06   26.2   0.0    1.5e-05   24.8   0.0    1.8  1  BPL_C          Biotin protein ligase C terminal domain
  ------ inclusion threshold ------
       0.11   12.7   0.0       0.19   11.9   0.0    1.6  1  ThuA           Trehalose utilisation


Domain annotation for each model (and alignments):
>> BPL_N  Biotin-protein ligase, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  499.5   0.0  1.3e-153  5.9e-150       1     377 []       6     387 ..       6     387 .. 0.96

  Alignments for each domain:
  == domain 1  score: 499.5 bits;  conditional E-value: 1.3e-153
       BPL_N   1 mnVLvYsGpgtskesvkhtletLrrlLspnYavqtvsakvllkePWastcallVlPgGaDlpYvrelngegnrkikeyVekGGkylGlCAGaYygskrv 99 
                 +nVLvYsG+gt+ esv+h+l+tLrrlL +nYav++v+ +++lkePW+++ca++V+PgGaD+pY+r+lngegnrki+++V++GG y+G+CAG+Yygs r+
  KKY24446.1   6 LNVLVYSGNGTTVESVRHCLYTLRRLLGSNYAVIPVTGDMILKEPWTANCAAFVVPGGADMPYCRTLNGEGNRKIRQFVQNGGIYIGFCAGGYYGSGRC 104
                 6************************************************************************************************** PP

       BPL_N 100 efevgdkklevvgeReLaffpgtcrGlafkGFkYesekGaravklkvskealkaeeekeefkiyynGggvFvdaeklknk.vevLArYaeeldvdsgea 197
                 efevg+k lev+geReLaffpgtcrG+af+GF+Y+sekGar ++++v+keal++ + ++ f++yynGggvFvda+k++++ vevLA+Y+e+l+vd+g++
  KKY24446.1 105 EFEVGNKILEVIGERELAFFPGTCRGCAFPGFVYHSEKGARPAEMQVNKEALNSGNIPDIFRTYYNGGGVFVDAKKYRERgVEVLASYTEDLAVDGGDG 203
                 *****************************************************999******************************************6 PP

       BPL_N 198 kkaAvvlckvgeGkalLtgvhpEfalanlkkqeaeekeykkvveeleadekaRleflkalLtklgLevneeeeetevpslsplllsslskeeveelles 296
                 + aA+vlc+vg+G+alLtg+hpEfa+ nl+++ a++++ +kvv++l++dek+ ++f+ka+L k+gL+v++   +++vpsls+++lss+ +++++e+l+s
  KKY24446.1 204 T-AAIVLCRVGDGAALLTGPHPEFATVNLDRS-ADKPDFDKVVDALANDEKHCMDFVKACLVKVGLKVSD---QQHVPSLSRIHLSSVVPQQTSEVLQS 297
                 6.***************************998.89**********************************3...368*********************** PP

       BPL_N 297 lkeklaaekeeeeevikdendtfrleked.............eeeaeeaaeeeeeekedleevvkeilvvkeeeelpskkltplFdieaYfkeL 377
                 l+e  a++ e++e++ik+ ndtf++ + +             +e++ + +  ++e+++d+++vvke+ +v++ e++p++k+tp+F+++a+f++L
  KKY24446.1 298 LQE--AITVEDGEQYIKGANDTFHIVNPStwkmsslkdallgKEQTGQVDGPQDENIIDYNAVVKEV-IVHK-EDYPQPKHTPYFNHHAFFSNL 387
                 ***..555568899**************99******9999987777777788888899*********.6666.57****************997 PP

>> BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.1   2.1e-10   9.6e-07      57     131 .]     451     537 ..     409     537 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2.1e-10
                    ...-CCGTHHHHHHHHHHHHHHH.......HHTT-TTEEEETTTEEEE.............TTEEEEEEEEEEEETTS-EEEEEEEEEE CS
  BPL_LplA_LipB  57 ktfqnrvlelyvsllvlavlealgyrd.skpgiegipvfikwpnDlyv.............ngrKlaGiavtstrgktlhhivigvgvn 131
                    + ++++++ ++++l ++av++ ++  + +  ++++ p++ kwpnD+ +              + K++G++v+s +  + +  v+g+g+n
     KKY24446.1 451 SLMTKSPAVFIQYLGAMAVVQGIQ--TyDGVKYRDFPIKLKWPNDIFAldptwdgkgdsrkAYTKIGGVLVNSHYDTQNYISVVGIGLN 537
                    45778899999************4..32667********************************************99999999999887 PP

>> BPL_C  Biotin protein ligase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   3.3e-09   1.5e-05       1      47 [.     605     661 ..     605     662 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 3.3e-09
                 STTSEEEEEETSCEEEEEEEEE.-TTSEEEEEETTE...........EEEESSCCEEE CS
       BPL_C   1 hsGqeVtlededgkveGiavGI.dddGaLllktddg..........lqpdinsGdisl 47 
                 h +q+Vtle+  g ++++++GI  d+G+L++++++            + d+ns+d++ 
  KKY24446.1 605 HMNQIVTLEQ-EGGARAKIKGItRDYGLLIAEELGWedrrtgktweIMSDGNSFDFFR 661
                 78********.67788******99*********9999999999999999999999995 PP

>> ThuA  Trehalose utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.2e-05      0.19       1      88 [.       7      96 ..       7     322 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.2e-05
                EEEEEE-..-.SHHHH-...HHHHHH-HHHT-EEEEETTS.G--HHHHHT-SEEEEE-G......GS-HHHHHH.HHHHHHTT-EEEEEGGG CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThuA  1 rVLvfsgtagerhdsieaaieaieklgkengfevdatedaavfteenLaqydvvvflsteg....evldaaqeaalqryveaGgGfvglhsA 88
                +VLv+sg +g   +s++    ++++l+++n   + +t d   ++e   a+  + v+ +  +     +l+ + +++++++v++Gg ++g+ ++
  KKY24446.1  7 NVLVYSG-NGTTVESVRHCLYTLRRLLGSNYAVIPVTGDM-ILKEPWTANCAAFVVPGGADmpycRTLNGEGNRKIRQFVQNGGIYIGFCAG 96
                7******.6779****************999999*****9.59999999999999999533334599********************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.48
# Mc/sec: 4168.48
//
Query:       KKY24447.1  [L=372]
Description: putative mitochondrial genome maintenance protein mgm101 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-86  287.6   0.0    3.1e-86  287.2   0.0    1.2  1  Mgm101p   Mitochondrial genome maintenance MGM101
  ------ inclusion threshold ------
      0.024   14.8   0.9      0.024   14.8   0.9    1.7  2  CHCH      CHCH domain
       0.11   12.4   0.0       0.19   11.7   0.0    1.3  1  CHASE5    Periplasmic sensor domain found in signal transduct


Domain annotation for each model (and alignments):
>> Mgm101p  Mitochondrial genome maintenance MGM101
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.2   0.0   5.2e-90   3.1e-86       1     170 []     192     361 ..     192     361 .. 1.00

  Alignments for each domain:
  == domain 1  score: 287.2 bits;  conditional E-value: 5.2e-90
     Mgm101p   1 dweesfkglskkpfskeaadvllapleeedveikpdGllYlpeikYrriLnkafGpggWglaprgetvvtekivtreyaLvvegrlvsearGeqeyfee 99 
                 dw++sf+gls++pfskeaad+l+a+l+++d+eikpdG++YlpeikYrriLnkafGpggWglaprge++vt k +treyaLv++grlvs+arGeq+yf++
  KKY24447.1 192 DWTRSFHGLSAEPFSKEAADILTADLNPDDIEIKPDGIIYLPEIKYRRILNKAFGPGGWGLAPRGESIVTAKAITREYALVAHGRLVSIARGEQDYFSP 290
                 8************************************************************************************************** PP

     Mgm101p 100 esiptategcksnalmRcCkDlGiaseLWdPefirkfkkkkaeevwvehvttkkkkklwkrkdeeveyPyk 170
                 e+ipta+egcksna+mRcCkDlG+aseLWdP+firk+k+++a++++v+h++tkk++ +w rk + v yP+k
  KKY24447.1 291 EGIPTASEGCKSNAMMRCCKDLGVASELWDPRFIRKWKAQYARQAFVDHQVTKKRTAIWLRKGDAVPYPWK 361
                 **********************************************************************7 PP

>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.9     4e-06     0.024       1      26 [.      31      55 ..      31      57 .. 0.95
   2 ?   -3.9   0.4       2.9   1.7e+04       8      11 ..     305     308 ..     302     311 .. 0.44

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4e-06
                THHHHHHHHHHHHHCTSSTTTTHHHH CS
        CHCH  1 CgeefkeylkClkdnsdefskCrkef 26
                C  e  ++ +C++d+ d +++C+ke+
  KKY24447.1 31 CSAEQLKMNDCYYDKRD-WRACKKEL 55
                999**************.******97 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.9
                 HHHH CS
        CHCH   8 ylkC 11 
                 +++C
  KKY24447.1 305 MMRC 308
                 3344 PP

>> CHASE5  Periplasmic sensor domain found in signal transduction proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.1e-05      0.19      35      81 ..     221     273 ..     203     283 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.1e-05
      CHASE5  35 llklqLeGlvrLPdidyieike....dsdvrva.aGep.ktssilnkefpLey 81 
                  ++ + +G++ LP+i+y +i +    +++  +a  Ge+ +t +++++e++L+ 
  KKY24447.1 221 DIEIKPDGIIYLPEIKYRRILNkafgPGGWGLApRGESiVTAKAITREYALVA 273
                 577888**************998877777766636998568899******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2269.60
//
Query:       KKY24448.1  [L=860]
Description: putative eukaryotic translation initiation factor 3 subunit [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-172  575.0  25.2   1.6e-172  575.0  25.2    3.2  2  eIF-3c_N  Eukaryotic translation initiation factor 3 subunit 
      6e-14   52.4   0.4    8.3e-13   48.8   0.0    3.0  2  PCI       PCI domain
  ------ inclusion threshold ------
        0.1   11.8   0.0       0.51    9.6   0.0    2.0  2  DUF1385   Protein of unknown function (DUF1385)


Domain annotation for each model (and alignments):
>> eIF-3c_N  Eukaryotic translation initiation factor 3 subunit 8 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.3  13.8         3   1.8e+04     131     181 ..      23      72 ..      10      74 .. 0.44
   2 !  575.0  25.2  2.6e-176  1.6e-172       5     588 ..      63     626 ..      59     630 .. 0.91

  Alignments for each domain:
  == domain 1  score: -7.3 bits;  conditional E-value: 3
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX........................ CS
    eIF-3c_N 131 yredPeeeeeeeeedededdegedeededeksvkateavkkaseskvekee 181
                 y e+ e+ee+ e+e e e+d++ed++de+  ++ a++++ + ++s+++ e+
  KKY24448.1  23 YSEEEESEEQSESEGESEEDSDEDSSDEEAGKTGASRFM-RDVDSESDSED 72 
                 444444444444444444444444444333333333333.23444333333 PP

  == domain 2  score: 575.0 bits;  conditional E-value: 2.6e-176
                 -TT---S--S-S-----SSGGGGTTTS-SSTTTTTTT---SSSHHHHHHHHHHH-HHHHHH..HH--S--XXXXXXXXXXXXXXXXX.....XXXXXXX CS
    eIF-3c_N   5 kesseessdeedtkrVVksaKdKrfeeltsiiktiknakkikdlvklleeFdklnkalekaksqkenvktPrlyikvlaeledflnelw.edkeakkkl 102
                 +  se  s++ed   VVksaKdKr+eel+s+ikti na+ki+d+  +++e+d+++++  k   +++++ +P++yik++ae+edf+ne   ++ke  kk+
  KKY24448.1  63 DVDSESDSEDEDRVTVVKSAKDKRLEELESTIKTIENAMKINDWAVISSEYDEMQRQTAK---ITQAGSVPKIYIKTIAEIEDFVNETHsKQKESGKKM 158
                 4455666777888899********************************************...799*********************8725678899** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX............................................ CS
    eIF-3c_N 103 sknnakalntlrQkvkKynkqfeddikkyredPeeeeeeeeedededdegedeededeksvkateavkkaseskvekeeeedeeteeeklskkekkekv 201
                  +nn+k +n++rQkvkK+nk+++ +++kyr+d +  +e +ee+++    ++ ++                  sk e+++e d   ++e ++++ +    
  KKY24448.1 159 TANNSKGFNAVRQKVKKNNKEHQTELEKYRQDKDAYMESDEEEQAAPV-EKVKK------------------SKAERVAELDAALDDEGFATVGR---- 234
                 *******************************99888877665544332.22222..................23333333333334443333333.... PP

                 ..XXXXXXXXXHHHHHHHHHHHHHHTSSSXXHHHHHHHHHHHHHHXSTCCHHHHHHHHHHHHHHHHCC.HTSSSXXHHHHHHHHHHHHHHHHHHHHCTT CS
    eIF-3c_N 202 kmfekkeeitvevvikklkeilsaRgkkttdrseqielleeLlkiaeekelkvkikfsiisarfdvna.klseymkievwkkaleeinslldilvanan 299
                        + t e ++k+l++i+++Rgkk+tdr+eqi+++e+Ll++a+++++k+++ +++is+rfd+ +  + +ym  e+w++a +e +sll+ l  n+ 
  KKY24448.1 235 --GGRTLQYTPESILKHLRTIIESRGKKNTDRAEQIKTMERLLEVAQTPYQKIRVLLTLISTRFDLTStSTQTYMSQEQWRSAEKEFTSLLETLETNPT 331
                 ..3455678999*****************************************************98757889*********************99998 PP

                 GCCXTTTXSSSXTTTTTTXXXXXXCCCCCSHHHHHHHHHHHHHHHHHHHSXTTSHHHHHHHHHHHHHHHHHHHHHHHHHHCXXT.......CHHHHHHH CS
    eIF-3c_N 300 ivvseevadeseeledetkedadgvirvrGsilafverlddEfvkslqniDpHsndYverLkdEksllaliervqkYlErtgds.......kevarvyl 391
                  +v +e a+e e+++++++  a + +++ Gsi++++erlddE+++slq+iDpH+++Y+erL dE+ l++ i r+    E+ +          ++ rv++
  KKY24448.1 332 YIV-VEGAEEWEDDDKQPAPTAGEIFKIPGSIVSYIERLDDELIRSLQHIDPHTSEYIERLSDEQLLYNSILRSLVHTEQANARegvegsqDNINRVVI 429
                 777.56677778878899999**********************************************************99988889999899****** PP

                 HHHHTTTTSXHHHHHHHHHHCHHCHHSXSSXHHCCTTXTTHHHHHHHHHHHHCTTSSXHHHHHHHHHHHHHHHHHHSXHHHHHHHHHHHXXSHHHHCSS CS
    eIF-3c_N 392 rriehiYYKfeevieaeeeslissfikvkekskekeataessdalmdkLckliykddeerirtrAiLchiyhhAlhdnfvkArDllLmShlQdniqhaD 490
                 rr+ehiY+K+ +v+ + ee++++s  +  + + + +    ++ +l++ Lc++++++ e  ir+rA+Lc+iy+ Al+dn+ kArDl LmShl +ni  +D
  KKY24448.1 430 RRLEHIYFKPTQVVAILEENTWKSLPSNLDSKVTPRGLQADVPSLVQGLCNYLFQNSEGIIRARAMLCQIYFLALQDNYWKARDLALMSHLTENIGTFD 528
                 *************************************************************************************************** PP

                 SCHHHHHHHHHHHHHHHHHHTTXHHHHHHHHHHHHTXTTHHHHTTXXXHHHHHHHHXSHHHHHHHHTTXXCCCXXXHHHHHHHHHHHHHHHHHHHHHH CS
    eIF-3c_N 491 istqiLyNRtmvqlGlcAFrqglikeahqaLsdllstgrvkElLgQgvlqrrqhektaeqekierrrqlPyHmhiNleLlecVyLvcamLlEiPamaa 588
                 +stqiL+NRt+vq+GlcAFr+gl  ea+ +L+++  +gr kElL+Qgv  +r+ + t+eqek+er+rqlP+HmhiNleLlecVyL+c+mLlEiP +a 
  KKY24448.1 529 VSTQILFNRTLVQIGLCAFRAGLCYEAQGVLQEICGSGRQKELLAQGVILQRYSQVTPEQEKLERQRQLPFHMHINLELLECVYLTCSMLLEIPLLAQ 626
                 **********************************************************************************************9996 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2      0.22   1.3e+03      44      74 ..     268     300 ..     238     323 .. 0.75
   2 !   48.8   0.0   1.4e-16   8.3e-13       2     104 ..     641     770 ..     622     771 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.22
                 HHHHHHHHHHHHH.CESEEEH..HHHHHHHTSSH CS
         PCI  44 kkvrerllrqvsk.iyssisl..erlaklldlsv 74 
                  k+ erll +v++ +y++i++    +++ +dl++
  KKY24448.1 268 IKTMERLL-EVAQtPYQKIRVllTLISTRFDLTS 300
                 57888899.6666699999851145666666655 PP

  == domain 2  score: 48.8 bits;  conditional E-value: 1.4e-16
                 HHHHHHHHHHHTSHHHHHHHHHHH...............HHHHHHHTTHHH........HHHHHHHHHHHHHHHHHHH....CESEEEHHHHHHHHTSS CS
         PCI   2 sysdllkalrsgnlsgfseelkdl...............eeelladdglaq........llesLekkvrerllrqvsk....iyssislerlaklldls 73 
                 +++++l+  +++ ++g++e+ +d+               + el+ + g+ +        +  +L  +++e+ lr++ +    +y ++sl +l+++++l+
  KKY24448.1 641 TFRRMLEYTERQVFTGPPENTRDHvmqaakalaqgewkrCTELISKIGIWDllgsdkdkVKVMLASQIQEEGLRTYLFtyapYYDTLSLTTLSEMFELP 739
                 689999999999************8888888887766665555555555559999******************88888********************* PP

                 HHHHHHHHHHHHHTTSSSEEEETTTTEEEEC CS
         PCI  74 vdevEkilvklIrdgeirakidqesgivvfk 104
                 v+++  i++++I+++ei+a +dq++  +vf+
  KKY24448.1 740 VKKIAAIVSRMISHEEIAAALDQVNDAIVFR 770
                 *****************************96 PP

>> DUF1385  Protein of unknown function (DUF1385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.2   1.2e+03      60      92 ..     471     503 ..     461     507 .. 0.83
   2 ?    9.6   0.0   8.5e-05      0.51     155     216 ..     530     592 ..     515     594 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.2
     DUF1385  60 lPallakllellknliegvirlaifllYlllis 92 
                 +P+l++ l++ l++  eg+ir   +l+ +++++
  KKY24448.1 471 VPSLVQGLCNYLFQNSEGIIRARAMLCQIYFLA 503
                 899999999999999******998887776655 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 8.5e-05
     DUF1385 155 gasslllrvllrllllpvvagisYelirlagks.dnllvkillapglllQklTtkePddsqie 216
                 +++ l+ r+l+++ l  + ag+ Ye + ++++   +   k lla g++lQ+     P+++++e
  KKY24448.1 530 STQILFNRTLVQIGLCAFRAGLCYEAQGVLQEIcGSGRQKELLAQGVILQRYSQVTPEQEKLE 592
                 55667799*************************99***********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (860 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2115  (0.117965); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.07u 0.36s 00:00:01.43 Elapsed: 00:00:00.57
# Mc/sec: 4573.82
//
Query:       KKY24449.1  [L=317]
Description: putative snare protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-05   22.8   0.5     0.0004   20.3   0.0    2.3  2  SNARE     SNARE domain
  ------ inclusion threshold ------
      0.014   15.4   1.1      0.024   14.7   1.1    1.3  1  TMEM247   Transmembrane protein 247
      0.049   13.5   0.3      0.049   13.5   0.3    2.4  2  DUF5089   Domain of unknown function (DUF5089)
       0.14   11.4   0.4       0.31   10.3   0.4    1.5  1  ECH_1     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.4      0.35   1.6e+03      22      33 ..     125     136 ..     125     141 .. 0.89
   2 !   20.3   0.0   8.9e-08    0.0004       1      49 [.     263     311 ..     263     312 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.35
                 HHHHHHHHHHCT CS
       SNARE  22 keLkkavkyqks 33 
                 ++L++a ++q+ 
  KKY24449.1 125 RQLQQATERQRE 136
                 69********95 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 8.9e-08
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXX CS
       SNARE   1 emvDrIdtnVenaqsnveraqkeLkkavkyqksnRklkciillilviil 49 
                 em+  + t+  ++++nv+++++eL +a ++ + +R   +  ++++++++
  KKY24449.1 263 EMIEQLVTDAVETDENVRKGNRELERATERRSTARTVFFASIGLCGFLI 311
                 89****************************************9999987 PP

>> TMEM247  Transmembrane protein 247
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   1.1   5.4e-06     0.024      71     163 ..      76     167 ..      47     175 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.4e-06
     TMEM247  71 lspkagpttkGqaGdgpelvelpeapgierkae.melekvrmefeltrlkylheenerqrqheevmeqlqkeaaaqqalprlfsGglqdlllpq 163
                    + g   +  aGd pe++ l +a ++e++     l+ vr        + l +  erqr  e v +++ +e+++++++ +++sG  + ++ p+
  KKY24449.1  76 YGKRNGLLWRWAAGDEPESEALKSAEQLEKEGRaYTLKTVRESVLWYLGRQLQQATERQR--EMVEKRISREREKEKSILHKISGERKGMVKPK 167
                 555666677788*****************9875156777777666666799999999987..78999999999999999999***999988886 PP

>> DUF5089  Domain of unknown function (DUF5089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   1.0      0.17   7.5e+02      99     111 ..     136     148 ..      94     215 .. 0.61
   2 ?   13.5   0.3   1.1e-05     0.049      17      65 ..     236     284 ..     230     303 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.17
     DUF5089  99 eeveeiknkeeea 111
                 e ve+  ++e e+
  KKY24449.1 136 EMVEKRISREREK 148
                 2233333333333 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.1e-05
     DUF5089  17 takkarkkLesaartqkkTtkelrkQgekLekakqsaikvhknaekgee 65 
                 ++++a k L + +  q+  +  l  Qge +e+  ++a+++ +n++kg+ 
  KKY24449.1 236 KIQSAEKSLLEVLSLQNTLISHLSTQGEMIEQLVTDAVETDENVRKGNR 284
                 6889******************************************985 PP

>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.4   6.9e-05      0.31     165     235 ..      78     149 ..      54     157 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.9e-05
                 HHCTSSSEEESGGGHHHHHHHHHHHHHHSCHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHHH CS
       ECH_1 165 lkvGlvdkvvpeeqlleealelaeklaekspa.alrqlkealnakledalaeqleaeaklfestfskddike 235
                 ++ Gl ++  + ++ ++eal+ ae+l ++++a  l++++e++   l ++l+++ e ++++ e+ +s +  ke
  KKY24449.1  78 KRNGLLWRWAAGDEPESEALKSAEQLEKEGRAyTLKTVRESVLWYLGRQLQQATERQREMVEKRISREREKE 149
                 789************************999873689***************************999987663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1199  (0.0668749); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2178.72
//
Query:       KKY24450.1  [L=449]
Description: putative aspartate aminotransferase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-85  287.7   0.0    1.5e-85  287.5   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.5   0.0   8.6e-90   1.5e-85       2     363 .]      70     442 ..      69     442 .. 0.98

  Alignments for each domain:
  == domain 1  score: 287.5 bits;  conditional E-value: 8.6e-90
                    EEEESSSSSTTSTTSS.HHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHC..TCTTCHTTGGEGEEEESHHHHHHHHHHHHHH.HTTT CS
  Aminotran_1_2   2 dvinLgsneylgdsgk.ptlpevakaekegalaggtlneygpidglpeleealakflg..rseklklkreaavvvgsGagaliealifllk.lnpg 93 
                    ++++Lg+++y++d++k + lp+v+ka ++ +++ + ++ey+pi gl+el +a  k++   +s+++k+ r a+++++sG+ga+    +f  k l p 
     KKY24450.1  70 KKVDLGIGAYRDDNAKpWILPSVKKADAKLHADPNLNHEYLPIAGLAELTSAAQKLMLgaDSPAIKEGRAATLQTISGTGAVHLGGAFYSKfLKPT 165
                    79***************************99*********************************************************99867788 PP

                    -EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEET CS
  Aminotran_1_2  94 deilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDea 189
                      i++++pt+a++++i+ + ++++ +yp+ ++++++ld+++++ alk+ap+g++   ++l+ ++hNPtG+++t ++++ ++++++++n+++f+D a
     KKY24450.1 166 PTIYLSSPTWANHNQIFTNVRLPIASYPYFDPKTRGLDFDGMISALKSAPSGSI---ILLHVCAHNPTGVDPTQDQWKSIAEVMRSKNHFPFFDCA 258
                    89****************************************************...*************************************** PP

                    TTTCBSSSS..HTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH...........HHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 190 Yagfvfgsl..davatranveeepnllivgslsKafGlaGeRvGyilgna...........avvsqlrklsrpfls..ssllqaavaaalsdallk 270
                    Y+gf++g+l  d +a+r +vee+ +l++++s++K+fGl+GeR G++  +a           +v+sql++l+r+ +s  +++++++++++ +d++l+
     KKY24450.1 259 YQGFASGDLsrDGWAVRYFVEEGFELVVAQSFAKNFGLYGERAGCFHFVAapgsdsrdvaqRVASQLAILQRSEISnpPAYGARIASTIFNDKELY 354
                    *********9999999******************************99888********************************************* PP

                    HH...HHHHHHHHHHHHHHHHHHHHHHS....TEEEECCSCSSEEEEEETHHCHHHHHHH..HHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHH CS
  Aminotran_1_2 271 qs...eleemrqrlqkrrkelrdeLael....glkvlasqsgmflltdlsaetakelskk..LleevgvyvtpgtsftvpgrlRitvAglteeele 357
                    ++   +l +m  r++++r++l+++L+el     +++++ q+gmf++t+l+++      ++  ++e+++vy+t+        ++Ri++Agl++ +++
     KKY24450.1 355 AQweeDLRTMSGRIKEMRTTLKAKLDELgtpgTWNHITDQIGMFTFTGLTEK------QVlaIREKWHVYMTK--------NGRISMAGLNTHNVD 436
                    ****************************************************......88889999*******........9************** PP

                    HHHHHH CS
  Aminotran_1_2 358 elveal 363
                    ++++a+
     KKY24450.1 437 YFAKAV 442
                    **9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 2678.12
//
Query:       KKY24451.1  [L=475]
Description: putative ring finger domain [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-13   50.4   4.3    3.3e-13   49.7   4.3    1.4  1  zf-RING_2      Ring finger domain
    5.2e-11   42.1   1.3    9.4e-11   41.3   1.3    1.4  1  zf-RING_11     RING-like zinc finger
    6.4e-08   32.3   4.8      1e-07   31.6   4.8    1.3  1  zf-C3HC4_2     Zinc finger, C3HC4 type (RING finger)
    1.7e-07   31.0   3.3    2.6e-07   30.4   3.3    1.3  1  zf-C3HC4       Zinc finger, C3HC4 type (RING finger)
    2.1e-07   31.1   2.9    4.6e-07   30.0   2.9    1.6  1  zf-rbx1        RING-H2 zinc finger domain
    1.6e-06   27.9   4.6    3.8e-05   23.5   5.7    2.2  2  Prok-RING_4    Prokaryotic RING finger family 4
    2.5e-05   24.2   2.1      4e-05   23.5   2.1    1.3  1  zf-RING_5      zinc-RING finger domain
    0.00034   20.4   1.1    0.00055   19.7   1.1    1.3  1  zf-C3HC4_3     Zinc finger, C3HC4 type (RING finger)
    0.00095   19.2   1.3     0.0018   18.3   1.3    1.4  1  zf-ANAPC11     Anaphase-promoting complex subunit 11 RING-H2 
     0.0012   18.5   3.3     0.0024   17.6   3.3    1.4  1  zf-RING_4      RING/Ubox like zinc-binding domain
     0.0065   16.5   7.0      0.013   15.5   7.0    1.5  1  zf-RING_UBOX   RING-type zinc-finger
      0.008   16.6   0.2      0.008   16.6   0.2    3.5  4  DUF1180        Protein of unknown function (DUF1180)
  ------ inclusion threshold ------
      0.031   14.6   1.6      0.052   13.9   1.6    1.4  1  zf-RING-like   RING-like domain
      0.041   13.7   1.2       0.62    9.9   0.2    2.3  2  Rad50_zn_hook  Rad50 zinc hook motif
      0.096   12.6   2.6       0.18   11.7   2.6    1.5  1  PHD            PHD-finger
       0.17   11.5   1.3       0.33   10.6   1.3    1.4  1  Zn_ribbon_17   Zinc-ribbon, C4HC2 type
       0.55   10.4   4.9        2.1    8.6   3.5    2.5  2  FANCL_C        FANCL C-terminal domain
        1.5    8.8   3.4        2.9    7.9   1.1    2.1  2  Prok-RING_1    Prokaryotic RING finger family 1
        1.9    8.7   5.2        3.7    7.8   5.2    1.5  1  zf-C3HC4_4     zinc finger of C3HC4-type, RING


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   4.3   3.5e-16   3.3e-13       3      44 .]     303     345 ..     301     345 .. 0.95

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 3.5e-16
   zf-RING_2   3 CpICleelssadsvlllpCgHvfhreClerw.lrssstCPlCr 44 
                 CpIC+e++ ++++v++lpC+H fh +C++ w l+ s tCPlCr
  KKY24451.1 303 CPICTEDFAKGQEVRVLPCNHKFHPDCVDPWlLNVSGTCPLCR 345
                 *******************************7888888****9 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   1.3   9.9e-14   9.4e-11       2      29 .]     303     330 ..     302     330 .. 0.98

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 9.9e-14
  zf-RING_11   2 CsICLeefkpgqalfilpCsHtFHfkCI 29 
                 C IC e+f++gq++++lpC+H FH +C+
  KKY24451.1 303 CPICTEDFAKGQEVRVLPCNHKFHPDCV 330
                 ***************************7 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   4.8   1.1e-10     1e-07       2      40 .]     303     344 ..     302     344 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.1e-10
  zf-C3HC4_2   2 CpiCldmlkdpsvvt..pCgHvfCqkCilrsLeekn.eCPlC 40 
                 CpiC + + ++  v   pC+H+f+ +C++++L + +  CPlC
  KKY24451.1 303 CPICTEDFAKGQEVRvlPCNHKFHPDCVDPWLLNVSgTCPLC 344
                 ********999766666*************8877777***** PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   3.3   2.8e-10   2.6e-07       1      41 []     303     344 ..     303     344 .. 0.95

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 2.8e-10
                 -TTT-S--SS-E...E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn..elleCkHsfCskCirkilksrkkvkCPlC 41 
                 CpiC+e +++ +  ++l+C+H+f+ +C++ +l  + + +CPlC
  KKY24451.1 303 CPICTEDFAKGQevRVLPCNHKFHPDCVDPWLL-NVSGTCPLC 344
                 ********9998889******************.88889**** PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   2.9   4.9e-10   4.6e-07      14      55 .]     303     345 ..     297     345 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 4.9e-10
     zf-rbx1  14 cieckapgdeecpvvlGeCgHaFHlhCiskWlkt.rkvCPlcr 55 
                 c+ c+++  +   v +  C+H+FH +C++ Wl + + +CPlcr
  KKY24451.1 303 CPICTEDFAKGQEVRVLPCNHKFHPDCVDPWLLNvSGTCPLCR 345
                 666666655555566668*************9888*******8 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.017        16      29      41 ..     298     311 ..     293     314 .. 0.69
   2 !   23.5   5.7     4e-08   3.8e-05       1      42 [.     303     350 ..     303     353 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.017
  Prok-RING_4  29 dls.sCPlCqrris 41 
                  + + +CP+C + ++
   KKY24451.1 298 NGNlGCPICTEDFA 311
                  33379****98765 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 4e-08
  Prok-RING_4   1 CvlCgeq...ekkailepCgHlvCkeCfdskdls...sCPlCqrrisk 42 
                  C +C+e    ++++++ pC+H +  +C d + l+   +CPlC++++ +
   KKY24451.1 303 CPICTEDfakGQEVRVLPCNHKFHPDCVDPWLLNvsgTCPLCRTNLGP 350
                  899999888899*******************555559******99865 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   2.1   4.2e-08     4e-05       2      44 .]     303     346 ..     302     346 .. 0.97

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 4.2e-08
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll.ekeavCpiCrk 44 
                 C++C e + k +++ +++C H f+ +C++  l + + +Cp+Cr+
  KKY24451.1 303 CPICTEDFAKGQEVRVLPCNHKFHPDCVDPWLlNVSGTCPLCRT 346
                 *******************************99*********95 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   1.1   5.8e-07   0.00055       4      46 ..     302     347 ..     299     349 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 5.8e-07
                 B-TTTSS...SBS-EEETTEEEEEE-HHHHHHHHH.TT-B-TTT--B CS
  zf-C3HC4_3   4 eCviCle...rprnvvllpCgHlvlCeeCaekllk.rkkkCpiCrrp 46 
                  C+iC e   + ++v +lpC+H  +  +C++ +l   + +Cp+Cr++
  KKY24451.1 302 GCPICTEdfaKGQEVRVLPCNHK-FHPDCVDPWLLnVSGTCPLCRTN 347
                 6******5555888*********.99*****99877*********86 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   1.3   1.9e-06    0.0018      34      80 ..     302     347 ..     296     351 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.9e-06
                 --TTCSTTTTTS-EEEBT.TS-EEEHHHHHHHHHHHSTSSB-TTTSSB CS
  zf-ANAPC11  34 tcpsckfpGddcplvlGk.ckhnfhlhcilkwletetskglcpmcrqt 80 
                  cp c+    +   v    c+h+fh  c+  wl +  + g cp+cr +
  KKY24451.1 302 GCPICTEDFAKGQEVRVLpCNHKFHPDCVDPWLLN--VSGTCPLCRTN 347
                 5888886655554443333**************75..789******76 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   3.3   2.5e-06    0.0024       1      45 [.     303     346 ..     303     348 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.5e-06
   zf-RING_4   1 cplCdeeldetdkdlkpCeCgyqiClfCyhrileeeegrCPaCre 45 
                 cp+C+e++ +++++++  +C++++  +C +  l + +g CP Cr+
  KKY24451.1 303 CPICTEDF-AKGQEVRVLPCNHKFHPDCVDPWLLNVSGTCPLCRT 346
                 9*******.6788888888899999*****9999**********7 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   7.0   1.4e-05     0.013       1      39 []     303     342 ..     303     344 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-05
  zf-RING_UBOX   1 CpIClelft..dPlv.lpCGHtFCreClwelskslegafkCP 39 
                   CpIC e+f   + +  lpC H F+ +C+      l+ + +CP
    KKY24451.1 303 CPICTEDFAkgQEVRvLPCNHKFHPDCV--DPWLLNVSGTCP 342
                   ********977333336***********..445778888887 PP

>> DUF1180  Protein of unknown function (DUF1180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   8.4e-06     0.008      69     135 ..     132     196 ..      99     201 .. 0.72
   2 ?    0.5   0.9      0.74     7e+02      38     102 ..     230     283 ..     198     291 .. 0.52
   3 ?   -0.6   0.7       1.6   1.5e+03      18      54 ..     352     391 ..     343     434 .. 0.62
   4 ?   -1.6   1.0       3.3   3.1e+03      32      56 ..     445     467 ..     431     474 .. 0.49

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 8.4e-06
     DUF1180  69 sspragsaadaggslavvpelssntdkpmtlqrallvlvvvsaavivylvvRtvr.lrrrnrktRrYg 135
                 s++ +g ++ a+gs + +   s n+++p t + a+++l ++++++ + ++v +v    r  r   rYg
  KKY24451.1 132 STSSSGGNSTASGSSSSSG--SGNSSEPTT-ATAMIILYAITGIITALFLVIIVTgAIRAHRHPERYG 196
                 2334455556777777777..89999****.************9998876655541557778878887 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.74
     DUF1180  38 Plppgataaespgkataieaksaqaaeggngssp.ragsaadaggslavvpelssntdkpmtlqra 102
                 Plpp        + a+ +e+ +a +++g++g ++ +a  aa+a  s a ++   +++dk ++ q  
  KKY24451.1 230 PLPP--------KPAEDVEM-GASSNQGHEGRTTdGARDAAVAEESTADST---DSDDKIHSRQNS 283
                 4444........22222222.233333444433202334444555555555...666666665444 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.6
     DUF1180  18 saadasralspaasspeae...pPlppgataaespgkata 54 
                 + ++ +++++p+   p+++   pPl  + ++ + p ++ a
  KKY24451.1 352 ESEEHADDENPSTDLPSTSdlaPPLEAEDATRRRPISSLA 391
                 5566777888888888888666666553333333333333 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 3.3
     DUF1180  32 speaepPlpp.gataaespgkataie 56 
                 s +++pP+ p  +t++  p  a + e
  KKY24451.1 445 SSTSTPPSEPvAETST--PRAAGT-E 467
                 3444566666222222..333333.2 PP

>> zf-RING-like  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.6   5.5e-05     0.052       1      43 []     303     344 ..     303     344 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.5e-05
  zf-RING-like   1 CeaCkeivtqGvrCsnesCnvrlHvdCfqhyirthsskkCpkC 43 
                   C +C e   +G+      Cn ++H dC++  +  ++s +Cp C
    KKY24451.1 303 CPICTEDFAKGQEVRVLPCNHKFHPDCVDPWL-LNVSGTCPLC 344
                   89999999999999999*************99.99999***99 PP

>> Rad50_zn_hook  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1       0.2   1.9e+02      17      29 ..     297     310 ..     293     315 .. 0.83
   2 ?    9.9   0.2   0.00066      0.62      19      35 ..     338     354 ..     334     355 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.2
                    T-SE.E-TTT--EE CS
  Rad50_zn_hook  17 eakg.cCPlCgRel 29 
                    e+++  CP C  ++
     KKY24451.1 297 ENGNlGCPICTEDF 310
                    778888****9988 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00066
                    SEE-TTT--EE-HHHHH CS
  Rad50_zn_hook  19 kgcCPlCgReldeehrs 35 
                     g CPlC  +l++++ +
     KKY24451.1 338 SGTCPLCRTNLGPDESE 354
                    569**********9965 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.6   0.00019      0.18       2      50 ..     303     345 ..     302     347 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00019
                 BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTH CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCk 50 
                 C +C + + ++++ v    C++ fH++C++p l   +++    +C+ C+
  KKY24451.1 303 CPICTE-DFAKGQEVRVLPCNHKFHPDCVDPWLL--NVSG---TCPLCR 345
                 99****.889999999999***********9988..4444...677776 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.3   0.00035      0.33       7      46 ..     303     342 ..     298     348 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00035
  Zn_ribbon_17   7 CayCela.vkgrvvlcgvCeHvlHasCarewfenddlaeCp 46 
                   C +C    +kg+ v    C+H  H +C++ w+ n   + Cp
    KKY24451.1 303 CPICTEDfAKGQEVRVLPCNHKFHPDCVDPWLLNVS-GTCP 342
                   666655425667777888*************98888.8888 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       9.4   8.9e+03      13      26 ..      38      51 ..      36      52 .. 0.81
   2 ?    8.6   3.5    0.0022       2.1       4      61 ..     302     344 ..     299     353 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 9.4
                -TT-----B--S-T CS
     FANCL_C 13 ldsgevpdisCdne 26
                l++g ++  sCd+ 
  KKY24451.1 38 LKDGDIAYLSCDDS 51
                568999999**985 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0022
                 S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT CS
     FANCL_C   4 eCgiCyayrldsgevpdisCdnekCnkkfHsaCLkeWlrslkesrqsfdvlfGeCPyC 61 
                  C+iC   + + +ev +       Cn+kfH  C+  Wl +++          G+CP C
  KKY24451.1 302 GCPICTEDFAKGQEVRVLP-----CNHKFHPDCVDPWLLNVS----------GTCPLC 344
                 6999999999777777765.....6789*********96543..........555555 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   1.1    0.0031       2.9       6      35 ..     302     330 ..     297     333 .. 0.88
   2 ?    0.5   0.0       0.6   5.7e+02       6      16 ..     340     350 ..     336     354 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0031
  Prok-RING_1   6 kCpvCgkelkeedDiVvCpeCgtpyHraCy 35 
                   Cp+C + +++++ + v p C   +H +C 
   KKY24451.1 302 GCPICTEDFAKGQEVRVLP-CNHKFHPDCV 330
                  6*************99988.9999999995 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.6
  Prok-RING_1   6 kCpvCgkelke 16 
                   Cp+C+ +l +
   KKY24451.1 340 TCPLCRTNLGP 350
                  69999988865 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   5.2    0.0039       3.7       1      42 []     303     344 ..     303     344 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0039
  zf-C3HC4_4   1 CPiCldYLekPv...sleCGhsfClsCisslqkepdgeqllCplC 42 
                 CPiC++ + k      l+C h f   C++ +  + +g+   CplC
  KKY24451.1 303 CPICTEDFAKGQevrVLPCNHKFHPDCVDPWLLNVSGT---CPLC 344
                 *****9998765112579****************9995...***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       867  (0.0483574); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.51
# Mc/sec: 2776.44
//
Query:       KKY24452.1  [L=961]
Description: putative serine threonine protein kinase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-19   68.4   4.2    1.2e-18   67.4   4.2    1.4  1  MS_channel  Mechanosensitive ion channel
     0.0018   17.7   0.1     0.0049   16.3   0.1    1.7  1  EF-hand_1   EF hand
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.035   14.1   0.0    1.8  1  EF-hand_6   EF-hand domain
      0.022   15.2   0.1      0.053   14.0   0.1    1.6  1  EF-hand_7   EF-hand domain pair
      0.045   13.3   0.1       0.11   12.0   0.1    1.6  1  EF-hand_5   EF hand
       0.59    7.8  19.2       0.79    7.4  19.2    1.1  1  Retinal     Retinal protein


Domain annotation for each model (and alignments):
>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   4.2   4.1e-22   1.2e-18       2     182 ..     451     633 ..     450     643 .. 0.87

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 4.1e-22
                 .HHHHHHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-.SS-TT-EEESSSEEEEEEEE-SSEEEEEET.TSEEEEEEH CS
  MS_channel   2 kilkiliivvgilivlsllgvnvsallavlGalglalglalkdlisnlvaGiillfek.pfkiGDlveigdieGtVediglrttkirtf.dgrivtiPn 98 
                 ++l i++ +v+i i+  +l+ ++++ la +G++ l+l++ +  + ++++++ i+lf k pf++GD+v+ig    +Ve i+l+ t +r+  d r+  +Pn
  KKY24452.1 451 NLLVIIATIVIIFIFVAFLNKSFTTTLATAGTTLLSLSFIFSATCQEVLGSCIFLFVKhPFDVGDRVDIGSDPLIVERISLLYTVFRSVnDYRTKQVPN 549
                 5678899999999999999999****************************988888777****************************96377999**** PP

                 HHHHTS-EEESSS.SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-TTB-T..TS-EEEEEEEE-SSSEEEEEEEEEET...T CS
  MS_channel  99 sslvtsnieNlsresgtrrikvsigvtyssdvkklekvleelkealkekpevlk..dkellvvldefgdsslnfevrvfvktvvpe 182
                   l +  +eN +r s+++r ++s ++  +++ + ++ +  el ++++ k++  +       +vl   ++s l+++v  + k+  ++
  KKY24452.1 550 IVLNSVWVENITR-SKAMREQISLSISADTSLEDIQLLKNELVKFVTDKENSRDflPDININVLAMTDLSKLELQVDLVHKS-NWS 633
                 *************.********************************999887776433333444455668888888888888.454 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.6e-06    0.0049       1      23 [.     400     422 ..     400     425 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.6e-06
                 HHHHHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfk 23 
                 e +e+F+ +D+Dg+G I+ +E++
  KKY24452.1 400 EAEEAFATLDRDGNGDISMDEMI 422
                 679******************86 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.2e-05     0.035       2      23 ..     401     422 ..     400     426 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElr 23 
                  +eaF  +D+dg+G i+++E++
  KKY24452.1 401 AEEAFATLDRDGNGDISMDEMI 422
                 679*****************86 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.8e-05     0.053      38      66 ..     394     421 ..     365     445 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
   EF-hand_7  38 gsklsdeelellfkefDtdkdGvisfdEF 66 
                 g++ ++ e e+ f  +D d++G is+dE+
  KKY24452.1 394 GND-RKSEAEEAFATLDRDGNGDISMDEM 421
                 344.4556778888888888888888887 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   3.7e-05      0.11       4      21 ..     404     421 ..     402     425 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.7e-05
                 HHHHH-SS-SSCE-HHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeEL 21 
                 +F  +D +g G Is++E 
  KKY24452.1 404 AFATLDRDGNGDISMDEM 421
                 6999*************6 PP

>> Retinal  Retinal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  19.2   0.00026      0.79     951    1111 ..     755     910 ..     698     957 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00026
     Retinal  951 saqsqaqaekaaslskqprkaiplhh....ssetsgqsrtsepslarptrgphspeasrqsqerspplvrkaSPtrahwapradkrqkslpsshrpa 1043
                   a     +++a + ++q+  a    +    +s+t+ + rt +    r    ++s+++ r++   +pp vr +SPt ++++++ +   ++  ss r +
  KKY24452.1  755 PAAYDPTRDNAPDYNRQETAAASAVNnditPSTTPDERRTNDVEEVRELLHQESTKGKRKGSSTGPPAVRTTSPTSVRPIREEE---HAAASSSRFT 848 
                  355666778888888887766554431222677889******************************************987764...5668899999 PP

     Retinal 1044 qpslptvqsspspplsprapsPpasprvlspptskkrtsppaqhklpsppkesspaqeklsspptqrt 1111
                     +p+ ++  +pp   r+ s p  ++  + pt+++         +p p   s  aq+  + +p+ +t
  KKY24452.1  849 PVEVPALREPVAPPP--RSDSRPGTSNGRGTPTARAPVEFHEYDYAPPPL--S-VAQSGRQ-SPSGNT 910 
                  999999888877775..999999999999***996655544333333333..2.2222222.233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (961 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       928  (0.0517597); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.85u 0.36s 00:00:01.21 Elapsed: 00:00:00.55
# Mc/sec: 5280.51
//
Query:       KKY24453.1  [L=237]
Description: hypothetical protein UCRPC4_g02411 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        5.5    7.4  13.0          7    7.0  11.8    1.9  1  Cytomega_UL20A  Cytomegalovirus UL20A protein


Domain annotation for each model (and alignments):
>> Cytomega_UL20A  Cytomegalovirus UL20A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  11.8   0.00039         7      16      67 ..      50     101 ..      41     123 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00039
  Cytomega_UL20A  16 tvalaapsqkskrsvtveqpststnsdgnttpsknvtlsqggsttdgdedys 67 
                     + a+aa s  +k s t e  st++ sd  +t + + t + g  tt   +  s
      KKY24453.1  50 STAVAAASSGAKASATAEATSTAASSDAAATTAAETTGASGTKTTKTSKTTS 101
                     56999**********************************9*99998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1438  (0.0802053); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 1519.15
//
Query:       KKY24454.1  [L=627]
Description: putative bzip transcription factor [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-11   44.1   0.1    5.7e-11   42.5   0.1    1.8  2  DUF3425   Domain of unknown function (DUF3425)
    1.7e-06   28.0   7.0    2.7e-06   27.4   7.0    1.3  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> DUF3425  Domain of unknown function (DUF3425)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.61   5.4e+03      94     110 ..     366     382 ..     360     383 .. 0.84
   2 !   42.5   0.1   6.4e-15   5.7e-11       2     117 ..     505     619 ..     504     625 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.61
     DUF3425  94 gdvtdlegWelkesFfr 110
                  d+ ++e +el+++F r
  KKY24454.1 366 NDPRSGEDFELSPTFSR 382
                 489999********976 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 6.4e-15
     DUF3425   2 dlprfpispseeaveklpenlrPtelQlriaHpveidvlpwpelRdrllrafqeeeidedeffrdvvstlivWsieeeelet.......aeissaelsa 93 
                  ++r+ + p+ee+++++p+ +rPt+ Q+ i+H ++ d++ +p++Rd+l   f++       +   + +  + W+ + e++ +       + +++a++++
  KKY24454.1 505 RFMRWLLLPTEESYNRIPRMMRPTQNQRFIPHNPVADLIAIPAIRDALCIRFRD------CVTPLINNAHFLWPHSLEDAVEhdpvlntYYLTEAFEQY 597
                 589*********************************************986666......344445557899*97777776689999999999999999 PP

     DUF3425  94 gdvtdlegWelkesFfrkYpylvd 117
                   v ++ ++++ +  ++ +p++  
  KKY24454.1 598 --VHNPDNFSIGRRLIEAFPEISG 619
                 ..99**********9999999865 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   7.0   3.1e-10   2.7e-06       2      37 ..      13      47 ..      12      50 .. 0.93

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 3.1e-10
                S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCC CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfysess 37
                aC  C+k+K KC+++ P C++Ck + + C  ++es 
  KKY24454.1 13 ACVACKKRKAKCSGGPPPCQSCKASDTVCI-IDESL 47
                9*************9999***********9.98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.52
# Mc/sec: 3636.92
//
Query:       KKY24455.1  [L=300]
Description: putative cofactor for methionyland glutamyl-trna [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-20   73.4   0.0    8.9e-20   70.6   0.0    2.1  1  tRNA_bind  Putative tRNA binding domain
  ------ inclusion threshold ------
        3.1    7.7   4.2        4.8    7.1   4.2    1.2  1  Suf        Suppressor of forked protein (Suf)


Domain annotation for each model (and alignments):
>> tRNA_bind  Putative tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   9.9e-24   8.9e-20       1      95 [.     101     218 ..     101     219 .. 0.93

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 9.9e-24
                 EEEEEEEEEEEETTSSTEEEEEEEESSSS..............EEEEEESCTTTSTHHHHTTEEEEEETTSESEEETTEEESSEE-EEEC......... CS
   tRNA_bind   1 lrvGkvleaeehpnadkLlvlkvdvGeee..............prqivsgaknvyepeelvakkvvvvanlkpkklrGveSeGMilsaee......... 76 
                 lrvG++l a +hp+ad+L++ ++d+G++                r+++sg++  ++ ee++++k++vvanlkp  +rG++S +M+l+a+          
  KKY24455.1 101 LRVGHILRAIPHPDADSLYISIIDMGDAPgsehtsldeatqktVRTVCSGLRGLVPLEEMQDRKIIVVANLKPVTMRGIKSAAMVLAASPkpaqgadsh 199
                 79************************987788899999999999**********************************************999998776 PP

                 CESSCEEEEEESST--TTC CS
   tRNA_bind  77 ldekevgilelpadveaGe 95 
                 + +  v+++++pa +eaG+
  KKY24455.1 200 GHDRVVELVNPPAGAEAGD 218
                 6667789999999999997 PP

>> Suf  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.2   0.00054       4.8     183     273 ..      24     113 ..       2     121 .. 0.55

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00054
         Suf 183 aasleeskvpqaqeskkrklesedssvkkPdklqmvespkkgaagrrleqqrksessksaeaasksqkalqqqpaplprsivallsvLPsa 273
                   +++++ + + + +++++ ++e+   ++P+  + +++p+++aa+ +++ +++++ +k+++++++   a + +pa l   + ++l+++P++
  KKY24455.1  24 DLTIHTKDAIKRPAHSSMNPDDETA-KHEPHPNSEGSTPGSAAATAESTTPKQKKEKKPKPPKQPAVTASPLSPALLDLRVGHILRAIPHP 113
                 1111122222222222222222222.24555555555566777777778888888888888888888888888888999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.55
# Mc/sec: 1654.44
//
Query:       KKY24456.1  [L=428]
Description: putative extracellular aspartic [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-57  195.4  11.9    1.8e-57  195.2  11.9    1.1  1  Asp              Eukaryotic aspartyl protease
    5.5e-08   33.2   5.0     0.0048   17.2   1.6    3.4  3  TAXi_N           Xylanase inhibitor N-terminal
     0.0013   19.4   9.2      0.011   16.3   2.0    3.5  3  Asp_protease_2   Aspartyl protease
  ------ inclusion threshold ------
       0.13   12.6   2.5       0.91    9.9   0.0    3.0  2  Cytomega_UL20A   Cytomegalovirus UL20A protein
       0.36   11.4   3.7       0.81   10.3   0.7    3.0  2  gag-asp_proteas  gag-polyprotein putative aspartyl protease


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.2  11.9     5e-61   1.8e-57       4     313 ..     110     424 ..     107     426 .. 0.89

  Alignments for each domain:
  == domain 1  score: 195.2 bits;  conditional E-value: 5e-61
                 EEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-E.EEEEEEEEECTTS.EEEEEEEEEEEEETTEEEEEEEEEEEEEESSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   4 geisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstyk.kngkslsisYGdg.svsGflsqdtvkvggltvknqefgeatkepgst 100
                 +++s+G   q++ ++fDTGSsd+WV++++    s  + h++ydp+kS+++   +g++++isYGdg  ++G +++d+v +gg tv+ q++g+ ++ ++s+
  KKY24456.1 110 SPVSVG--GQTLVMDFDTGSSDMWVFNTNLA-ASSQTGHTIYDPTKSTAAAtVSGATFDISYGDGsFANGPVGTDQVDIGGATVQAQTIGLPNNVSTSF 205
                 567777..589*******************9.67899***********98857999*********99******************************** PP

                 HTTSSSSEEEE-S-GGGSCGG...SCCHHHHHHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGEEEEEEEEEESS.TSSTEEEEEEEEETTEEE.E CS
                 xxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.x RF
         Asp 101 flaakfdGiLGlgfkeisvee...atpvfdnlvsqglikepvfsvylnreeeeggeivfGgvDeskykGsltyvpvts.kgywqielesvtvggktv.l 194
                 + +++ +G+LGl+f+++++++   a+++fdn+  +g ++++vf+  l   ++++g++ fG +D+++++Gsl+ v v+  +g+wq++ + + vg+ ++  
  KKY24456.1 206 VDDTASNGLLGLAFSSLNTVQpnqAKTFFDNV--AGNLSQQVFTANLR--SNSTGSYEFGSIDTTQFQGSLNQVTVDDsNGFWQFTSTTFVVGDGATqQ 300
                 *******************999889999***6..567*********95..899***********************98799************999967 PP

                 EEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTE..EEETTCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEE....SSSTTSEEEESEEECCTSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxx RF
         Asp 195 cssgcqailDtGTsllalptsivekiakaigak..ksesegeyvvdCdslsslpdisftiggakitvpvselvlke....eeseesqCilglvseeegd 287
                 ++++  ai+DtGTsll ++ s+++ + +++ ++  ++e+ g +v+ C+s  slpdi++  g+   tv+ s++ + +    ++ +++ C+ gl+s+e+++
  KKY24456.1 301 NTDSGTAIADTGTSLLLVDPSVLNGYYTQVTGAidATEEVGGVVFPCNS--SLPDIAVATGDSMATVSGSNMNFADagvtNNAGQDLCFGGLQSNEGSS 397
                 788889*****************999998877522456679*******7..*********************987522213455699************ PP

                 SEEEEHHHHTTEEEEEE.TTTTEEEEE CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxx RF
         Asp 288 lwiLGdvFlrsayvvfd.ldnnrvglA 313
                   i+GdvF rs +v f  +d   +g+A
  KKY24456.1 398 FQIFGDVFFRSQFVAFQkTDPPSLGIA 424
                 ****************93344566666 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   5.2e-05      0.19      11      55 ..     116     160 ..     108     164 .. 0.88
   2 !   17.2   1.6   1.3e-06    0.0048      80     177 ..     163     261 ..     160     262 .. 0.77
   3 ?    4.0   0.0     0.015        53      13      62 ..     304     353 ..     291     403 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.2e-05
      TAXi_N  11 pqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavp 55 
                 +q+l +++DtGs+ +Wv  ++  a+s+  ++++dp+ks+  ++v+
  KKY24456.1 116 GQTLVMDFDTGSSDMWVFNTNLAASSQTGHTIYDPTKSTAAATVS 160
                 47899**************999*9***************999986 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.3e-06
      TAXi_N  80 eyeisygadgssssGvlatdtltlsstdgksvkvpnlvfGCgksnlgglaa..gadGilGLGrgklSlvsqlaskg........slgnkFsyCLsssss 168
                 +++isyg dgs+++G ++td++ +     ++++v+  ++G  ++ + ++ +   ++G+lGL++++l  v+  ++k+          +++F+  L    s
  KKY24456.1 163 TFDISYG-DGSFANGPVGTDQVDI-----GGATVQAQTIGLPNNVSTSFVDdtASNGLLGLAFSSLNTVQPNQAKTffdnvagnLSQQVFTANL---RS 252
                 689***8.****************.....899*********997777777734589*********99998888776556544444455555555...66 PP

      TAXi_N 169 sssgvlffG 177
                 +s+g   fG
  KKY24456.1 253 NSTGSYEFG 261
                 666666666 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.015
      TAXi_N  13 plklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavpcssslCk 62 
                 + ++++DtG +l+ v+ +  +  + q +++ d +++     +pc+ssl  
  KKY24456.1 304 SGTAIADTGTSLLLVDPSVLNGYYTQVTGAIDATEEVGGVVFPCNSSLPD 353
                 556899***********999999999999999999999999999998876 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   2.0   3.2e-06     0.011       2      90 .]     111     219 ..     110     219 .. 0.60
   2 ?   -0.4   0.0      0.52   1.9e+03      44      78 ..     258     296 ..     237     304 .. 0.68
   3 !    5.3   0.3    0.0089        32      11      63 ..     306     356 ..     296     388 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.2e-06
  Asp_protease_2   2 pvtinGkpvrfllDTGastt.lispelaeklglkvreseltvrvsgaggevkarlvrlds..............lklggltlknvp........a 73 
                     pv+++G+++ + +DTG+s + + ++ la++   +  ++ ++ + s+a  +v+++++ +                + +gg+t++ ++         
      KKY24456.1 111 PVSVGGQTLVMDFDTGSSDMwVFNTNLAASS-QTGHTI-YDPTKSTAAATVSGATFDISYgdgsfangpvgtdqVDIGGATVQAQTiglpnnvsT 203
                     799***************8615555566444.333333.23444444444444444444333444445555555999999999887333333335 PP

  Asp_protease_2  74 lvldlgeeidglLGmdf 90 
                     +++d ++ ++glLG+ f
      KKY24456.1 204 SFVD-DTASNGLLGLAF 219
                     5555.889999999866 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.52
  Asp_protease_2  44 vsgaggevkarlvrldslklgg....ltlknvpalvldl 78 
                     ++  + +++   + l+++++ +    +++++ +++v d+
      KKY24456.1 258 YEFGSIDTTQFQGSLNQVTVDDsngfWQFTSTTFVVGDG 296
                     444444566677778888886666668888889999883 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0089
  Asp_protease_2  11 rfllDTGasttlispelaeklglkvreseltvrvsgaggevkarlvrldslkl 63 
                     +++ DTG s +l++p++ +    +v++       + +gg v+     l+++ +
      KKY24456.1 306 TAIADTGTSLLLVDPSVLNGYYTQVTGA--IDATEEVGGVVFPCNSSLPDIAV 356
                     799*************998776655553..22234455566555555555555 PP

>> Cytomega_UL20A  Cytomegalovirus UL20A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00025      0.91       8      35 ..       5      33 ..       1      48 [. 0.77
   2 ?   -0.6   1.8      0.45   1.6e+03      35      76 ..      85     135 ..      72     159 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00025
  Cytomega_UL20A  8 lsllavt.ltvalaapsqkskrsvtveqp 35
                      ll +t lt  laaps + krs  ve+ 
      KKY24456.1  5 QILLFITfLTCVLAAPSPHQKRSFKVERV 33
                    4455554389****************975 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.45
  Cytomega_UL20A  35 pststn..sdgnt..tpsknvt.....lsqggsttdgdedysggdydvlit 76 
                       tstn   dg+   t s+n++     +s gg t   d d    d  v+ t
      KKY24456.1  85 ANTSTNgtEDGEVtaTGSQNLAeflspVSVGGQTLVMDFDTGSSDMWVFNT 135
                     455665225776511457776433333567777777766666665555544 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.7   0.00022      0.81       2      89 ..     111     219 ..     110     221 .. 0.60
   2 ?   -0.9   0.1      0.72   2.6e+03       9      27 ..     304     322 ..     298     341 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00022
                      EEEETTEEEEEEEETT-SS-.EEEHHHHHHTTGGGGEB...TT--................EE-TTSTT-EEEEEEEEEE.EETTE........ CS
  gag-asp_proteas   2 kvkingkpvkflvDTGAsst.iiseelaerlglsrkedk.gkvev................ktangeveakrvrldsvkiggielr........ 69 
                      +v++ g+++ + +DTG s++ + +++la   +  + + + +k+++                + ang     +v  d+v igg++++        
       KKY24456.1 111 PVSVGGQTLVMDFDTGSSDMwVFNTNLAASSQTGHTIYDpTKSTAaatvsgatfdisygdgSFANG-----PVGTDQVDIGGATVQaqtiglpn 199
                      68999***********88762679999996654444432122222456677777774444444444.....44455555555555411111111 PP

                      EEEEEEEEESSSSEEEEHHH CS
  gag-asp_proteas  70 nvsavvlegelddlLLGldf 89 
                      nvs ++++++++ +LLGl f
       KKY24456.1 200 NVSTSFVDDTASNGLLGLAF 219
                      46778888888888999976 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.72
                      EEEEEEETT-SS-EEEHHH CS
  gag-asp_proteas   9 pvkflvDTGAsstiiseel 27 
                      + +++ DTG s  ++ +++
       KKY24456.1 304 SGTAIADTGTSLLLVDPSV 322
                      667999***9988887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 2566.09
//
Query:       KKY24457.1  [L=376]
Description: putative cytosolic fe-s cluster assembling factor nbp35 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-95  318.5   0.0    3.6e-95  318.1   0.0    1.2  1  ParA         NUBPL iron-transfer P-loop NTPase
    1.1e-08   35.2   0.0    2.2e-08   34.2   0.0    1.5  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
      6e-06   25.7   0.8    0.00017   20.9   0.2    2.7  2  ArsA_ATPase  Anion-transporting ATPase
    1.5e-05   25.0   0.0    5.7e-05   23.1   0.0    1.8  1  AAA_31       AAA domain
     0.0081   16.0   0.0       0.44   10.3   0.0    2.2  2  AAA_26       AAA domain
  ------ inclusion threshold ------
      0.036   13.4   0.0      0.078   12.2   0.0    1.5  1  MipZ         ATPase MipZ
      0.052   13.3   0.0      0.093   12.5   0.0    1.4  1  CLP1_P       mRNA cleavage and polyadenylation factor CLP1 P-
      0.067   13.1   0.1       0.15   12.0   0.1    1.5  1  RsgA_GTPase  RsgA GTPase
      0.069   12.6   0.0       0.81    9.1   0.0    2.1  2  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif
      0.099   12.2   0.1       0.19   11.3   0.1    1.3  1  AAA_25       AAA domain
        0.1   11.9   0.0       0.21   10.9   0.0    1.4  1  Zeta_toxin   Zeta toxin
       0.18   11.5   0.0       0.25   11.0   0.0    1.3  1  AAA_30       AAA domain
       0.21   11.3   0.0       0.28   10.9   0.0    1.2  1  AAA_24       AAA domain


Domain annotation for each model (and alignments):
>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.1   0.0   2.6e-98   3.6e-95       2     245 ..     113     363 ..     112     364 .. 0.97

  Alignments for each domain:
  == domain 1  score: 318.1 bits;  conditional E-value: 2.6e-98
        ParA   2 vkkviavlSgKGGVGKStvavnlAlaLa.kkglkvgllDaDiyGpsiprllgveeekpeqsekkliPvea.kgikvmSigfllesedeavvwrGpmksk 98 
                 +k++++vlSgKGGVGKSt+++ l+ a+a + + +v+++D+Di+Gpsip+++gve e++++s++++ Pv + +++ vmS++f+l+++d+av+wrGp+k++
  KKY24457.1 113 IKHKLLVLSGKGGVGKSTFSALLSHAFAsNPDSSVAVMDTDICGPSIPKMMGVEAETIHVSNAGWSPVWVtDNLGVMSVQFMLPNRDDAVIWRGPKKNG 211
                 89*************************9567899**********************************9989*************************** PP

        ParA  99 aikqllkdvewgelDyLiiDlPPGtgDeqltvaqkl...plagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgfvcpkcgekteif..gkg 192
                 +ikq+lkdvewgelDyLi+D+PPGt+De+l+v + l    ++gav+Vttpqev+l dv+k+i++++k+ ++vlG+veNmsgfvcpkc+++++if  ++g
  KKY24457.1 212 LIKQFLKDVEWGELDYLIVDTPPGTSDEHLSVNSFLkesGVDGAVVVTTPQEVSLLDVRKEIDFCRKAGIRVLGLVENMSGFVCPKCTHESQIFkaTTG 310
                 **********************************99777789****************************************************55569 PP

        ParA 193 ggeklaeelgvpllgeipldpeireasdegkplvlkepeseaakaleeiaekv 245
                 gg++l+e++g+p+lg++pldp+i  a+d g++++ + p+s+a  al++++++v
  KKY24457.1 311 GGRRLCEDMGIPFLGAVPLDPRIGMACDYGESFMDNFPDSPACIALRQVVRNV 363
                 *************************************************9987 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   1.6e-11   2.2e-08       2     126 ..     118     341 ..     117     343 .. 0.86

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 1.6e-11
                 EEEESSTTSSHHHHHHHHHHHHHH.TT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   2 aiastkGGvGKTtlaanLaralar.rglrVllvDaDpqannlaileglendiep............................................. 54 
                 ++ s+kGGvGK+t++a L  a+a      V++ D+D  +++    +g+e +                                                
  KKY24457.1 118 LVLSGKGGVGKSTFSALLSHAFASnPDSSVAVMDTDICGPSIPKMMGVEAETIHvsnagwspvwvtdnlgvmsvqfmlpnrddaviwrgpkknglikqf 216
                 799*********************559**************9955555544444999****************************************** PP

                 ...................................................CCHCCCHHHHHHCHCHHHH...EEEEEEEEESS....-TTCHHHHHHH CS
                 ...................................................xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
        CbiA  55 ...................................................dlkrllellealgkkkall.lkiagvvlnrvdge.neetllkealeel 100
                                                                    d+ + + ++++ g+++  l  ++ g+v  +   e + +++   + ++l
  KKY24457.1 217 lkdvewgeldylivdtppgtsdehlsvnsflkesgvdgavvvttpqevsllDVRKEIDFCRKAGIRVLGLvENMSGFVCPKCTHEsQIFKATTGGGRRL 315
                 ***************************************************777777777777766433378888999888765514577788888899 PP

                 HHHCTS-EEEEEE--CCHCCCCHHTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA 101 kqrygvpvlgviprdeavaeaparge 126
                 ++++g+p+lg +p d ++  a   ge
  KKY24457.1 316 CEDMGIPFLGAVPLDPRIGMACDYGE 341
                 9889*********9999877766665 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.2   1.2e-07   0.00017       2      38 ..     116     153 ..     115     196 .. 0.73
   2 ?    1.3   0.0      0.11   1.6e+02     114     134 ..     214     234 ..     210     241 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.2e-07
                  EEEEEEESTTSSHHHHHHHHHHH.HHHTTS-EEEEE-S CS
  ArsA_ATPase   2 kvilvgGKGGVGKttvsaatavk.lsekgkkvllistD 38 
                  k+++++GKGGVGK+t sa ++    s+ + +v ++ tD
   KKY24457.1 116 KLLVLSGKGGVGKSTFSALLSHAfASNPDSSVAVMDTD 153
                  8899****************998456778899999999 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.11
                  HHHHHHHHCSSSSEEEEESBS CS
  ArsA_ATPase 114 eellkyvkeeeydvvvlDtaP 134
                  +++lk v+  e d++++Dt+P
   KKY24457.1 214 KQFLKDVEWGELDYLIVDTPP 234
                  5788999999*********99 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   4.1e-08   5.7e-05       7     138 ..     120     247 ..     115     280 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 4.1e-08
      AAA_31   7 anqKGGvGKTTtsvnlaaala.klgkkvLlvDlDpQanatt.glgiekneiektlyevlieeknikeaiiktkvenldlipssidLaeaeielvelekk 103
                    KGGvGK+T s  l+ a+a + +  v ++D D  + +    +g     +e + ++v  +++  + + +   ++nl ++  +  L + ++ ++    k
  KKY24457.1 120 LSGKGGVGKSTFSALLSHAFAsNPDSSVAVMDTDICGPSIPkMMG-----VEAETIHV--SNAGWSPVWV---TDNLGVMSVQFMLPNRDDAVIWRGPK 208
                 567*****************97889*********98876551344.....34444455..5677778888...7899**************99999888 PP

      AAA_31 104 eeil.kellekvk.deYDyiiiDcpPsL..glltenaLv 138
                 ++ l k++l++v+  e Dy i+D+pP    + l +n+++
  KKY24457.1 209 KNGLiKQFLKDVEwGELDYLIVDTPPGTsdEHLSVNSFL 247
                 77766*******9458**********6511456666554 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.042        58       2      27 ..     116     141 ..     115     150 .. 0.81
   2 !   10.3   0.0   0.00032      0.44     132     194 ..     256     333 ..     226     336 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.042
      AAA_26   2 tifvtgtdtgvGKTvvslgLvralkr 27 
                 +++v +   gvGK++ s++L +a+ +
  KKY24457.1 116 KLLVLSGKGGVGKSTFSALLSHAFAS 141
                 678888899************99854 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00032
      AAA_26 132 ilVargglgtinqllltiealrqknvrvlGvilNk....vrnp..e...........nvetlekksgipvlGvvPylpdl 194
                 ++V+++++ ++ ++   i+++r+ ++rvlG++ N     +  p  +             + l++  gip lG+vP +p++
  KKY24457.1 256 VVVTTPQEVSLLDVRKEIDFCRKAGIRVLGLVENMsgfvC--PkcThesqifkattgGGRRLCEDMGIPFLGAVPLDPRI 333
                 67888888899999999***************99855532..2343333444444455556666666********99976 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.7e-05     0.078       4     110 ..     118     236 ..     115     270 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.7e-05
                 EE--SSTTSSHHHHHHHHHHHHHTT.T--EEEEE--TTT-HHHHHHHHHHHHHHHHT-.........-----E.EE-SSS-HHHHTTS-HHHHHHHHHH CS
        MipZ   4 vlgnekGGsGksttavhvavaLlkk.Garvaaidldlrqrtlarylenraataerkgl.........sLplpe.alalseaeeaeveeeeeaevaelee 91 
                  +   kGG Gkst +  +  a++++   +va++d d+   ++ + ++  a+t + ++          +L + +  ++l++ + a + ++ +++   +++
  KKY24457.1 118 LVLSGKGGVGKSTFSALLSHAFASNpDSSVAVMDTDICGPSIPKMMGVEAETIHVSNAgwspvwvtdNLGVMSvQFMLPNRDDAVIWRGPKKN-GLIKQ 215
                 45567****************99872679**************99998888876544311111111123322203355666666665555554.56677 PP

                 HHHHHH.HH-SEEEEE--.SS CS
        MipZ  92 lvadle.aeldfividtP.Gs 110
                  ++d+e  eld++++dtP G+
  KKY24457.1 216 FLKDVEwGELDYLIVDTPpGT 236
                 777776357899999987343 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.7e-05     0.093       1      36 [.     122     158 ..     122     171 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.7e-05
      CLP1_P   1 GpkdsGKSTlarlLlNyalrkgrkpv.yvDlDvGqse 36 
                 G+  +GKST+++lL    +++  + v ++D+D+  ++
  KKY24457.1 122 GKGGVGKSTFSALLSHAFASNPDSSVaVMDTDICGPS 158
                 66789*************999975555*****96554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00011      0.15      97     120 ..     113     136 ..     103     153 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
                  CTTSEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  97 lkdktsvlvGqSGvGKStLinall 120
                  +k+k+ vl G+ GvGKSt+   l 
   KKY24457.1 113 IKHKLLVLSGKGGVGKSTFSALLS 136
                  68899*************977665 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00058      0.81       4      27 ..     119     142 ..     116     170 .. 0.83
   2 ?    1.2   0.0      0.15     2e+02     194     246 ..     313     365 ..     268     376 .] 0.69

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00058
   Fer4_NifH   4 aiyGkGGiGksttsqnlsaalaem 27 
                  + GkGG+Gkst s+ ls+a+a++
  KKY24457.1 119 VLSGKGGVGKSTFSALLSHAFASN 142
                 567*****************9976 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.15
   Fer4_NifH 194 ekfaeelgtkvlevvPrdeivrkaelrkktvieyapeseqakeyrelarkile 246
                 +++ e++g++ l +vP+d  +  a    +  ++  p+s+ +   r++ r++ e
  KKY24457.1 313 RRLCEDMGIPFLGAVPLDPRIGMACDYGESFMDNFPDSPACIALRQVVRNVSE 365
                 35789999999******999999988888888888888888887777777754 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00013      0.19      32      59 ..     114     141 ..     104     151 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
      AAA_25  32 agelallaGapgtGKttlaldlalavat 59 
                 +++l +l G +g+GK+t+   l++a a+
  KKY24457.1 114 KHKLLVLSGKGGVGKSTFSALLSHAFAS 141
                 78999**************999999885 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00015      0.21      14      65 ..     113     166 ..     106     176 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdele..rqgnvvrldpDdlRelhPeyeeil 65 
                  + kl++l+G  G GKs+ ++ll  +++  ++++v ++d+D   + +P+  +++
  KKY24457.1 113 IKHKLLVLSGKGGVGKSTFSALLSHAFAsnPDSSVAVMDTDICGPSIPKMMGVE 166
                 567899********************9988899999999999999999877754 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00018      0.25      17      81 ..     114     178 ..     106     231 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
      AAA_30  17 gdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk 81 
                 ++++ vl G  G GK+t  + l +a++++  + +++  t      + + +g+ea+ti+     + 
  KKY24457.1 114 KHKLLVLSGKGGVGKSTFSALLSHAFASNPDSSVAVMDTDICGPSIPKMMGVEAETIHVSNAGWS 178
                 57799************************888888889999999999999******997665555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00021      0.28       5      42 ..     118     154 ..     114     232 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00021
      AAA_24   5 iliyGpsgiGKTtlakelgpkplfidtekGlksldadk 42 
                 +++ G+ g+GK+t+ + l  +++  + + +++ +d d 
  KKY24457.1 118 LVLSGKGGVGKSTFSALL-SHAFASNPDSSVAVMDTDI 154
                 6899**************.9999999999888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 2309.77
//
Query:       KKY24458.1  [L=190]
Description: hypothetical protein UCRPC4_g02416 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1457.88
//
Query:       KKY24459.1  [L=932]
Description: putative polarized growth protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-10   40.6   0.0    2.3e-09   37.7   0.0    2.4  1  PH        PH domain
    2.3e-09   37.2   0.1    3.9e-09   36.5   0.1    1.4  1  SAM_2     SAM domain (Sterile alpha motif)
    3.5e-09   36.4   0.1    6.6e-09   35.5   0.1    1.5  1  SH3_9     Variant SH3 domain
    3.7e-09   36.0   0.0    7.6e-09   35.0   0.0    1.6  1  SH3_1     SH3 domain
    0.00017   21.2   0.1    0.00035   20.2   0.1    1.5  1  SH3_2     Variant SH3 domain
    0.00042   20.7   0.1     0.0012   19.2   0.1    1.9  1  PH_11     Pleckstrin homology domain
     0.0034   17.8   0.1     0.0068   16.8   0.1    1.5  1  SAM_1     SAM domain (Sterile alpha motif)
  ------ inclusion threshold ------
      0.024   14.9   0.0       0.16   12.3   0.0    2.1  2  PH_8      Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0     1e-12   2.3e-09       3     102 ..     690     831 ..     688     833 .. 0.78

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1e-12
                 EEEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEEC.....................................TTSS CS
          PH   3 keGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevva.....................................tedp 64 
                 ++Gw++kk+s   ++wk r f+Lk+ +l+yy ++    d e +g+i++sn++v   ++                                     ++  
  KKY24459.1 690 YSGWMKKKSSSLMTTWKPRLFILKGHRLSYYYSE---DDLEERGVIDISNHRVLVADQdtittlhatltgsthspispqntqgpssldekvifqtKSGQ 785
                 79*************************9999998...8***************9776688888888888888888777777776666666666533355 PP

                 SSTSEEEE........EESTSSSTEEEEEEESSHHHHHHHHHHHHH CS
          PH  65 krkfcfel........riverngsrtyllqasseeerkeWikaiqs 102
                 + +f f+l        r v+ ++++ +++q+++  e ++W+  + +
  KKY24459.1 786 DGPFFFKLvppkagisRAVQFTKPTIHYFQVDTRAEGRKWMGELMK 831
                 5555555577777777333333359999999999999999987765 PP

>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.1   1.7e-12   3.9e-09       1      65 [.     267     333 ..     267     334 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 1.7e-12
                 GGGHHHHHHHHHHHHTTT.GGGHHHHHHTTCSHHHHHTTSCHHHH..HHTTHHHHHHHHHHHHHHHHH CS
       SAM_2   1 veswsledvaeWLrsigl.kqytdnFrdagitgaelllrlteedL..krlGitsvghrkkilkkiqel 65 
                 v+ w+++++a+ Lr+ig  ++++d+F++++itg ++ll +++ +L  k+ +   +g+r+k+++k++++
  KKY24459.1 267 VKAWDHKQTAQHLREIGVdPRHCDIFEEQEITG-DVLLDMDQAFLymKEYDFGVMGRRLKTWHKVRAF 333
                 789******************************.************86888888**********9875 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.1     3e-12   6.6e-09       1      48 [.      25      77 ..      25      78 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 3e-12
       SH3_9  1 AlypyepreddeLsLqrGDvitvieese...dgWlegs.l.tGrtGlvPanyv 48
                +++++e+r+ deL L+rGD+i + e ++   dgW++g+ l ++  Gl+P  y+
  KKY24459.1 25 VVHDFEARSSDELTLRRGDRIKLVELDDgfgDGWYLGKhLgHEGNGLFPGVYT 77
                79*********************97765666*******6689999*******7 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   3.4e-12   7.6e-09       2      47 ..      25      73 ..      24      74 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 3.4e-12
                ESSSBEXSSTTBXEBSTTEEEEEEEECSS...SEEEEEETTSTEEEEEE CS
       SH3_1  2 AlYDYeaeesdELsfkkGDviivleksed...gWwkgrlkgtgkeGliP 47
                + +D+ea++sdEL++++GD i+++e +++   gW+ g+  g    Gl+P
  KKY24459.1 25 VVHDFEARSSDELTLRRGDRIKLVELDDGfgdGWYLGKHLGHEGNGLFP 73
                679**********************9999***********99899***9 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   1.5e-07   0.00035       3      50 ..      24      73 ..      22      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.5e-07
                EESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE..CCCEEEEE CS
       SH3_2  3 raiedyvgedkseLsfkkGdvikvlslgskdsdgwwegev..gGrvGlfP 50
                +++ d+++ + +eL++++Gd ik+++l +   dgw++g    +   GlfP
  KKY24459.1 24 VVVHDFEARSSDELTLRRGDRIKLVELDDGFGDGWYLGKHlgHEGNGLFP 73
                7999*********************77777777*****884555559999 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   5.5e-07    0.0012       2      58 ..     691     749 ..     690     832 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5.5e-07
       PH_11   2 kGylkkkgsk...aWkrrwfavlkdgvLeyYksekkkvvkhviklSngseaklkadlisa 58 
                  G++kkk+s    +Wk r f +lk  +L+yY se +   + vi +Sn  + +   d i  
  KKY24459.1 691 SGWMKKKSSSlmtTWKPRLF-ILKGHRLSYYYSEDDLEERGVIDISNHRVLVADQDTITT 749
                 5999999999999*******.***************99999****998877666665554 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   3.1e-06    0.0068       2      40 ..     269     308 ..     268     315 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.1e-06
                 CTTHSSHHHHHHHTTS.GGGHHHHHTTTSSHHHHTTSCHH CS
       SAM_1   2 kwsvedVgeWLesigl.gqYadlFrageidgdaLlllted 40 
                  w++++ ++ L++ig  ++++d F+++ei+gd Ll++++ 
  KKY24459.1 269 AWDHKQTAQHLREIGVdPRHCDIFEEQEITGDVLLDMDQA 308
                 599999*******************************986 PP

>> PH_8  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.1e-05      0.16       1      54 [.     692     744 ..     692     753 .. 0.86
   2 ?   -0.7   0.0      0.79   1.8e+03      22      53 ..     805     842 ..     803     852 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.1e-05
        PH_8   1 gillkkrrkklqgyakRfFvLdlksstlsYyrddnssalrgkiplsla.iisane 54 
                 g++ kk    +  ++ R F+L  k   lsYy+++++ + rg i +s   ++ a++
  KKY24459.1 692 GWMKKKSSSLMTTWKPRLFIL--KGHRLSYYYSEDDLEERGVIDISNHrVLVADQ 744
                 7999*****************..9*********************9874444444 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.79
        PH_8  22 dlksstlsYyrddnssalrg......kiplslaiisan 53 
                 ++++ t++Y++ d  ++ r       k ++++++++  
  KKY24459.1 805 QFTKPTIHYFQVDTRAEGRKwmgelmKATINHTAVNFH 842
                 67889999999887764333111111445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (932 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 6308.88
//
Query:       KKY24460.1  [L=531]
Description: putative cell division control protein dna repair exonuclease [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3822.53
//
Query:       KKY24461.1  [L=1034]
Description: hypothetical protein UCRPC4_g02419 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-88  294.6   8.0    8.8e-88  294.5   2.1    2.8  3  NRDE-2    NRDE-2, necessary for RNA interference


Domain annotation for each model (and alignments):
>> NRDE-2  NRDE-2, necessary for RNA interference
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.5   2.1   4.9e-92   8.8e-88       3     321 ..     272     579 ..     271     580 .. 0.91
   2 ?   -1.3   0.3     0.051   9.2e+02      69     113 ..     706     749 ..     684     785 .. 0.71
   3 !    2.1   0.0    0.0049        87      85     126 ..     934     971 ..     916     982 .. 0.81

  Alignments for each domain:
  == domain 1  score: 294.5 bits;  conditional E-value: 4.9e-92
      NRDE-2   3 naelnraveenPedidaWlelvefQdellsaeeeslskserkalaeiklsilekAleknksnpdserLllelLklgseiwdseklakeWeellkenpns 101
                   el++av+ + +++daW+ l+++ d+    + +s+s+se+ ala+ikls++e+Al k k+++++e+L+l++Lk+g++iwd++kla++W+++l+en++s
  KKY24461.1 272 LHELHQAVKGKATNLDAWMTLINHHDQTSFGSTKSISNSEKIALADIKLSLYEEALVKVKESAHRETLVLGMLKEGAKIWDTRKLASKWQRILQENTKS 370
                 679***********************66655666999************************************************************** PP

      NRDE-2 102 vkLWreyldfrqsnfasfsvekvkelyekclrtlsaklegrkvshkaeeeteeellyvllrlcrflrqaGysErAvalwQAliElnlfrPsslsnqeel 200
                  +LW eyl+f  +n+   +++++++l+ ++ ++++ + +++k         +  l+yv+lr++r ++++G++E ++alwQA++E+++  P++ls   ++
  KKY24461.1 371 PRLWLEYLEFFNTNILVYRYDTCRSLFLEAAKAIHTSDDEKK---------NLYLVYVFLRMTRTMHDSGFTEYSLALWQAILEITFLGPQTLSY--SQ 458
                 ********************************9999877655.........578***************************************44..34 PP

      NRDE-2 201 tlkeFeeFWesevpriGeegakGWakwvekeeeeedkpeskkepsekeesaedlfeaWleaErereskawlPartmdeeeeeDpervvlfsDieplLfk 299
                 +++ F  FWese+priGe gakGW+ w++++e+++   e+++++  +    ++lf +W++aE  re++a +Part+d+++e+Dp+rv+lfsD+e+ L  
  KKY24461.1 459 RRDYFTRFWESEAPRIGEVGAKGWRYWMNENEKTD--VEPVSDDLGSPLDGHNLFATWSKAEVYREKTAEFPARTLDDVAEDDPYRVILFSDLEDTLDA 555
                 4689************************7765555..5555556665666668********************************************86 PP

      NRDE-2 300 lpsk..elkeqLidafLeflglpp 321
                 ++ +  e    Li+afL+f+ lpp
  KKY24461.1 556 FRLDklENTSVLIEAFLKFCDLPP 579
                 555534889*************98 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.051
      NRDE-2  69 rLllelLklgseiwdseklakeWeellk........enpnsvkLWreyldfrq 113
                 +L+++ ++ ++++w+++         l+        e+++++ LW +++  ++
  KKY24461.1 706 ELRIGNIETAERTWSTA---------LSmskqfaeeEQKTDILLWDTWIWECL 749
                 45555555555555554.........444444444466689999999986665 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.0049
      NRDE-2  85 eklakeWeellkenpnsvkLWreyldfrqsnfasfsvekvke 126
                 + +++ +e++l+++p+s  L++ yl f+++n     +ek  +
  KKY24461.1 934 NSIRSAFENALSSYPHSPLLYTLYLRFELQNS----LEKATQ 971
                 5678899*********************9964....445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1034 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.49
# Mc/sec: 6352.50
//
Query:       KKY24462.1  [L=1778]
Description: putative ssu processome component [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-40  137.5   6.5    7.8e-39  133.1   1.0    4.0  4  BP28CT      BP28CT (NUC211) domain
    1.6e-14   54.3   0.5    1.6e-14   54.3   0.5    5.4  4  U3snoRNP10  U3 small nucleolar RNA-associated protein 10
    0.00052   20.0   7.2       0.55   10.6   0.0    6.0  6  HEAT        HEAT repeat
  ------ inclusion threshold ------
      0.032   14.7  19.6        5.7    7.6   0.0    8.5  9  HEAT_EZ     HEAT-like repeat
      0.041   14.3  10.1        1.4    9.4   0.0    6.0  6  HEAT_2      HEAT repeats
       0.37   10.3   1.5         13    5.2   0.1    2.3  2  DUF3300     Protein of unknown function (DUF3300)


Domain annotation for each model (and alignments):
>> BP28CT  BP28CT (NUC211) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.1   6.3e+03     105     132 ..     847     873 ..     820     899 .. 0.65
   2 ?    1.8   0.1     0.064   1.9e+02     101     150 ..    1197    1238 ..    1190    1268 .. 0.77
   3 ?    2.6   0.0     0.038   1.1e+02       5      59 ..    1365    1418 ..    1361    1439 .. 0.87
   4 !  133.1   1.0   2.6e-42   7.8e-39       6     158 .]    1495    1642 ..    1490    1642 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHH---------HH..... CS
      BP28CT 105 syllenavelLkalnekseeskekkkkk 132
                 s++l++a+  + ++n++ +++k  ++++
  KKY24462.1 847 SHILDHALGSIASVNDQPAHKKR-RTSQ 873
                 78999999999888765333322.2222 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.064
                  -TTHHHHHHHHHHHHH---------HH...........HHHHHHHHHHHH CS
      BP28CT  101 tsYasyllenavelLkalnekseeskekkkkkeekkveLlrlvlstLtkc 150 
                   +Y+s+lle+++el +++++++  s++        + ++l++ l+ L+ +
  KKY24462.1 1197 RKYFSHLLEQTLELTQSVASHDGLSTA--------TNDMLTSLLNLLSLS 1238
                  58************9999866554444........445666666666655 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.038
                  HHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHH.HH-----HHHHH CS
      BP28CT    5 nlkelfkfflkaldlRreqaskkeeeeidevEesvieafvalv.lKLneatFrPlF 59  
                   l++l++++l++ldl  ++ s++  ++++    ++++a++++v + L++a +r ++
  KKY24462.1 1365 ILPSLMSMVLELLDLSLNEGSES--AQLHSATFALLSALLSYVpFMLSDAHLRSIL 1418
                  6799************7777766..99****************889*******886 PP

  == domain 4  score: 133.1 bits;  conditional E-value: 2.6e-42
                  HHHHHHHHHHHHHHHHHHT----...HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH...HHTSTT----..-HHHHHHHHHHHHH---- CS
      BP28CT    6 lkelfkfflkaldlRreqaskke...eeeidevEesvieafvalvlKLneatFrPlFlklveWaeeesselskkdsk..eRlitfykllnklaekLk 97  
                  ++++ +++l+a+dlRr+qa++++   e+ei+++E++++ +++++++KLn+++FrPlF ++v+Wa++ ++ +++++++   R+++f+++l  ++++Lk
  KKY24462.1 1495 SESMLDLLLSAFDLRRTQAQDSDnydEQEIAKIEQQTNGVAIKMIYKLNDTAFRPLFSRIVDWATTPTDFQKSNTTElqLRQLSFFNFLSLFFSTLK 1591
                  678999************999999****************************************944444444444466****************** PP

                  ----TTHHHHHHHHHHHHH---------HH...........HHHHHHHHHHHHHHHHGGGG CS
      BP28CT   98 slftsYasyllenavelLkalnekseeskekkkkkeekkveLlrlvlstLtkcflhDqdeF 158 
                  s++tsYa+ ++ +a+ +L  +n++   ++       +++  L++ vlstL++ f+hD d+F
  KKY24462.1 1592 SIVTSYATLIIPTATTILADYNPT---AT-------STSFPLWTGVLSTLKSLFTHDADDF 1642
                  ******************888753...22.......35688******************99 PP

>> U3snoRNP10  U3 small nucleolar RNA-associated protein 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.5   5.3e-18   1.6e-14       3     115 ..     248     360 ..     246     361 .. 0.93
   2 ?    0.9   0.3      0.19   5.6e+02      42      96 ..     753     806 ..     741     859 .. 0.66
   3 ?   -1.3   0.0      0.92   2.8e+03      40     105 ..    1024    1102 ..     973    1118 .. 0.59
   4 ?    1.4   1.0      0.13   3.9e+02       5      47 ..    1369    1418 ..    1361    1424 .. 0.75

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 5.3e-18
                 HHHHHHHHHHHT-TT-HHHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHH--GGGHHHHHHHHHHHHHT-SS-S--HHHHHHHTTSTTHHHHHHHHTT CS
  U3snoRNP10   3 tallpvllegLlssssadlqaaaymilsvLaskvpLsdkvleallesilknlskelaksallcllvlaqsqsakllpkkvlkallklpsladvLeelsk 101
                  ++lp+l+++   + ++dl +++y++   Las++ Ls+kv ++l+e+i ++ls+e+  +a+l+l+vl+++ ++  +pk++   +  ++++++vL++l+ 
  KKY24462.1 248 LKVLPTLNDAYALRGQKDLLIGCYTVTMILASRLALSQKVTRSLMEAIGSTLSHETSGPAILALCVLLDNNKSVAVPKELASPIITRKEFDEVLVKLNA 346
                 589******66655788****************************************************998888************************ PP

                 TS--HHHHHHHHHH CS
  U3snoRNP10 102 eyrvdkfllallks 115
                 +y++ +f+++ l++
  KKY24462.1 347 SYSIGDFVVGALET 360
                 ********988765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.19
                 HHHHHHHHHHHH--GGGHHHHHHHHHHHHHT-SS-S--HHHHHHHTT.STTHHHHH CS
  U3snoRNP10  42 vleallesilknlskelaksallcllvlaqsqsakllpkkvlkallk.lpsladvL 96 
                  +++++ si+++ +k++++  l c++ ++ s+  ++l +++ k++ + +p++a++ 
  KKY24462.1 753 EIDSIMLSIISSSQKDAVNLILSCVSPIQISR--ASLLDAASKRIIElWPQFATDT 806
                 57788888888866777777788888887766..4444444444444466644433 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.92
                  HHHHHHHHHHHHHH--GGGHHHH..........HHHHHHHHHT-S.S-S...--HHHHHHHTTSTTHHHHHHHHTTTS-- CS
  U3snoRNP10   40 dkvleallesilknlskelaksa..........llcllvlaqsqs.akl...lpkkvlkallklpsladvLeelskeyrv 105 
                  + v+++++++i+  l ++l k++          ll+ ++ +++   +     l + ++++l + + l + L+ l++ y +
  KKY24462.1 1024 AHVINQAIDQIIPPLIDSLRKQKkdivsgtsdlLLSFAAAFEHMPaH-RrlgLFDILIQRLGATDTLHAMLAMLANRYPN 1102
                  34777777777777666666666666666666555555555444321.12234455555555555566666666555555 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.13
                  HHHHHHH....HHT-.TT-HHHHHHHHHHHHHHHHTT-..S-HHHHHHHH CS
  U3snoRNP10    5 llpvlle....gLls.sssadlqaaaymilsvLaskvp..Lsdkvleall 47  
                  l++ +le     L++ s sa l+ a++ +ls L s vp  Lsd+ l+++l
  KKY24462.1 1369 LMSMVLElldlSLNEgSESAQLHSATFALLSALLSYVPfmLSDAHLRSIL 1418
                  44555555555677888899***************999666777776665 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.34     1e+03      10      26 ..     539     555 ..     530     560 .. 0.80
   2 !   10.6   0.0   0.00018      0.55       1      26 [.     569     594 ..     569     595 .. 0.91
   3 ?   -1.1   0.2       1.1   3.1e+03      12      30 ..     977     995 ..     967     996 .. 0.86
   4 !    6.8   0.1    0.0032       9.5       1      30 [.    1284    1314 ..    1284    1315 .. 0.88
   5 ?   -3.3   0.1       5.6   1.7e+04      10      22 ..    1706    1718 ..    1700    1725 .. 0.62
   6 ?   -1.7   0.0       1.7     5e+03       5      16 ..    1742    1753 ..    1739    1753 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.34
                 T-SSHHHHHHHHHHHHH CS
        HEAT  10 sDpspeVReaAakaLga 26 
                 s  sp+ R aA ka+g+
  KKY24462.1 539 SNVSPQLRNAAWKAIGD 555
                 5668999********97 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00018
                 HHHHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLga 26 
                 l+P +l  lsD++++VR+ ++ ++ +
  KKY24462.1 569 LFPYILVGLSDSHMKVRQQVVTTVSQ 594
                 78******************999876 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.1
                 SSHHHHHHHHHHHHHHHHC CS
        HEAT  12 pspeVReaAakaLgalaev 30 
                 ++p+V  +A++ ++ala+v
  KKY24462.1 977 DNPQVQNSALLLVAALASV 995
                 6899************987 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0032
                  HHHHHHHHHT-SSHH.HHHHHHHHHHHHHHC CS
        HEAT    1 llPlllkllsDpspe.VReaAakaLgalaev 30  
                  llP+l +l +D+  +    aA+ ++ ++ e+
  KKY24462.1 1284 LLPTLANLVQDKVDSrLKHAAVACIDRITEK 1314
                  89*********777747**********9986 PP

  == domain 5  score: -3.3 bits;  conditional E-value: 5.6
                  T-SSHHHHHHHHH CS
        HEAT   10 sDpspeVReaAak 22  
                  +++ ++VR ++++
  KKY24462.1 1706 TSDFASVRLSSVR 1718
                  6667778877765 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 1.7
                  HHHHHT-SSHHH CS
        HEAT    5 llkllsDpspeV 16  
                  ++++l+D++ +V
  KKY24462.1 1742 IQRMLEDDDEKV 1753
                  899******998 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.53   1.6e+03      10      39 ..     223     256 ..     218     257 .. 0.83
   2 ?    7.6   0.0    0.0019       5.7       4      54 ..     545     594 ..     542     595 .. 0.76
   3 ?    4.3   0.0      0.02        59       1      34 [.     979    1012 ..     979    1024 .. 0.82
   4 ?    0.6   0.0      0.29   8.5e+02      22      41 ..    1027    1041 ..    1021    1052 .. 0.82
   5 ?   -0.9   0.3      0.83   2.5e+03      27      53 ..    1238    1264 ..    1228    1265 .. 0.67
   6 ?    1.3   0.1      0.18   5.4e+02      26      52 ..    1281    1308 ..    1271    1311 .. 0.85
   7 ?   -3.8   0.1         6   1.8e+04       8      31 ..    1348    1371 ..    1347    1377 .. 0.66
   8 ?    5.8   0.1    0.0067        20      19      44 ..    1666    1694 ..    1665    1697 .. 0.76
   9 ?   -2.8   0.0       3.2   9.7e+03      31      44 ..    1740    1753 ..    1737    1757 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.53
     HEAT_EZ  10 aL.Gr...laggepellqplvpeilpaLlalLnd 39 
                 aL Gr   + +g+++ + +  ++++   l++Lnd
  KKY24462.1 223 ALtGRieqARSGRRDIQDQREQDLMLKVLPTLND 256
                 6646677888999999999*************98 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0019
     HEAT_EZ   4 RraAaw.aLGr....laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                  r+Aaw a+G     l+   + +lq     + p+ l +L+d++ +VR++++ + ++
  KKY24462.1 545 LRNAAWkAIGDslqnLL--TSSDLQ----ILFPYILVGLSDSHMKVRQQVVTTVSQ 594
                 5788888**97655444..555566....889999999999999******998876 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.02
     HEAT_EZ    1 wrvRraAawaLGrlaggepellqplvpeilpaLl 34  
                  ++v+++A++ +++la+++pe++   v  i  +++
  KKY24462.1  979 PQVQNSALLLVAALASVAPEHVLHSVMPIFTFMG 1012
                  79*******************8887777777776 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.29
     HEAT_EZ   22 lqplvpeilpaLlalLndds 41  
                  +++++++i+p+L+     ds
  KKY24462.1 1027 INQAIDQIIPPLI-----DS 1041
                  67899********.....54 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.83
     HEAT_EZ   27 peilpaLlalLnddsdeV.RaaAagaLg 53  
                  +e+++   +lL  +  +V R++A++ L+
  KKY24462.1 1238 SELVDVIQRLLLRPG-DVlRTKALRLLE 1264
                  444445555554455.555******997 PP

  == domain 6  score: 1.3 bits;  conditional E-value: 0.18
     HEAT_EZ   26 vpeilpaLlalLnddsd.eVRaaAagaL 52  
                  +  +lp L++l +d+ d + + aA+ ++
  KKY24462.1 1281 ILSLLPTLANLVQDKVDsRLKHAAVACI 1308
                  5679*************99999999886 PP

  == domain 7  score: -3.8 bits;  conditional E-value: 6
     HEAT_EZ    8 awaLGrlaggepellqplvpeilp 31  
                  +++L+++ ++ ++++ p +p ++ 
  KKY24462.1 1348 LLCLSSMVEVLKDTVIPILPSLMS 1371
                  567877776777777777777665 PP

  == domain 8  score: 5.8 bits;  conditional E-value: 0.0067
     HEAT_EZ   19 pellqplvpeilpaLl...alLnddsdeV 44  
                  p ll++++p +lp+L+     L++++++ 
  KKY24462.1 1666 PSLLSTHLPHLLPCLVsfaTSLTSSPPHL 1694
                  889*************6655555566665 PP

  == domain 9  score: -2.8 bits;  conditional E-value: 3.2
     HEAT_EZ   31 paLlalLnddsdeV 44  
                   +  ++L+dd+ +V
  KKY24462.1 1740 VYIQRMLEDDDEKV 1753
                  566799****9998 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00047       1.4       5      59 ..     534     596 ..     531     614 .. 0.73
   2 ?   -3.2   0.1       3.9   1.2e+04      64      84 ..     966     986 ..     959     995 .. 0.64
   3 ?   -0.6   0.1      0.62   1.8e+03      35      75 ..    1146    1190 ..    1137    1198 .. 0.66
   4 ?    4.0   0.8     0.023        68      11      62 ..    1250    1315 ..    1240    1332 .. 0.65
   5 ?   -0.5   0.0      0.54   1.6e+03      10      40 ..    1430    1461 ..    1427    1500 .. 0.80
   6 ?   -0.7   0.0      0.62   1.9e+03      16      50 ..    1719    1756 ..    1709    1767 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00047
      HEAT_2   5 lqalendpdpevrraairaLg........rignpea...lpaLvellededpavRraaaeaLgaig 59 
                 + ++++  +p++r aa +a+g        + +   +   +p+++  l+d+++ vR++++++ ++++
  KKY24462.1 534 IRVAVSNVSPQLRNAAWKAIGdslqnlltSSD---LqilFPYILVGLSDSHMKVRQQVVTTVSQVR 596
                 566678889************85554332222...233589999999**************99985 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.9
      HEAT_2  64 lpaLkellddddddvvReaAa 84 
                 +++  e+++ +d++ v+++A+
  KKY24462.1 966 VDLVIECARVTDNPQVQNSAL 986
                 566666666666666666654 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.62
      HEAT_2   35 aLvelleded...pavRraaaeaLgaigd.pealpaLkelldddd 75  
                  +L+ l + ed    +v +  ++aL+++ + ++  ++  + l+ d+
  KKY24462.1 1146 TLLGLSTEEDgeaFNVAHGLITALSKLYEkSDLKRSMSRVLRKDE 1190
                  5666664444333789999******99872444467777766654 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.023
      HEAT_2   11 dpdpevrraairaLg.rignp............ealpaLvellede.dpavRraaaeaLgaigdpe 62  
                   p + +r +a+r L  r++++            ++lp+L +l++d+ d++  +aa+  + +i ++ 
  KKY24462.1 1250 RPGDVLRTKALRLLEsRLRTTagkdtathltilSLLPTLANLVQDKvDSRLKHAAVACIDRITEKV 1315
                  555667888888888644444555556666666779999999999757999999999998774432 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.54
      HEAT_2   10 ndpdpevrraairaLgr.ignpealpaLvell 40  
                   ++++e rr a++ L+r  + +++lpa+ +  
  KKY24462.1 1430 GSECQEPRRDALELLARgVDAKKLLPAIQKTW 1461
                  57888999********5489999999998844 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 0.62
      HEAT_2   16 vrraairaLg..ri.gnpealpaLvellededpavRra 50  
                  +++a  ++Lg  ++ ++ e + ++ ++led+d+ v  +
  KKY24462.1 1719 IQAALTKELGeeWLaNSGEMMVYIQRMLEDDDEKVELE 1756
                  44555578887744145588888899999999988665 PP

>> DUF3300  Protein of unknown function (DUF3300)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2     0.013        38      59     133 ..    1464    1537 ..    1446    1565 .. 0.80
   2 ?    5.2   0.1    0.0044        13      78     119 ..    1718    1759 ..    1707    1770 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.013
     DUF3300   59 dWDpSvkaLvafpdvLeklsedldwtqkLGdaflaqeeevldavQrLRqkAkaagnLksteqqkvtveeeqivie 133 
                  + D  v+a++++ +++e++ +  +  + +G +  +  + +l a    R++A++++n +++e  k++++++ + i+
  KKY24462.1 1464 SIDNGVEAVTEILTIIETMVDSKQKSTIIGISE-SMLDLLLSAFDLRRTQAQDSDNYDEQEIAKIEQQTNGVAIK 1537
                  448889999999999999999999999998542.3334566666667889******************9999887 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0044
     DUF3300   78 sedldwtqkLGdaflaqeeevldavQrLRqkAkaagnLkste 119 
                    + + t++LG+ +la+  e++  +Qr+ +  +++ +L++ e
  KKY24462.1 1718 RIQAALTKELGEEWLANSGEMMVYIQRMLEDDDEKVELETRE 1759
                  5567789*********************99999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1778 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.42
# Mc/sec: 12831.37
//
Query:       KKY24463.1  [L=1212]
Description: putative kinesin family protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.8e-116  388.1   0.0   3.9e-116  387.6   0.0    1.3  1  Kinesin      Kinesin motor domain
    5.6e-57  192.2   0.0    1.4e-56  190.9   0.0    1.7  1  PMSR         Peptide methionine sulfoxide reductase
    1.5e-26   93.2   0.0    4.2e-26   91.7   0.0    1.8  1  Microtub_bd  Microtubule binding
  ------ inclusion threshold ------
        3.6    7.8   9.2       0.79   10.0   3.7    2.3  2  Herpes_UL14  Herpesvirus UL14-like protein


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  387.6   0.0  8.8e-120  3.9e-116      25     333 .]      78     379 ..      15     379 .. 0.93

  Alignments for each domain:
  == domain 1  score: 387.6 bits;  conditional E-value: 8.8e-120
                 TCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBCTTTSBSHHHHHHHHHHHHHHHCTTTHEE CS
     Kinesin  25 keeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegkeeeeeGiipraleelFesikkekeekek 123
                 ++ +++   + k+ ++++f+Fd++fde++tq+evye t+++l++svl+Gynat+faYG+tg+GKT+T++g+  +++Gii+ +++elFe+i + kee  k
  KKY24463.1  78 QKFSRSVVPQGKRVKDQTFAFDRIFDENSTQSEVYEATTRNLLDSVLDGYNATVFAYGATGCGKTHTITGT-AQQPGIIFLTMQELFERIGDIKEE--K 173
                 455566667788999*******************************************************9.999*****************9988..8 PP

                 EEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTT CS
     Kinesin 124 efsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekgeknrkvaetklneeSSRSHavftitleqknlkee 222
                  ++v++sylEiYne+i+DLL +    +k+ l +red+++  v v+gl++++ +++eev++++ +g++ r+++ t++n++SSRSHav++i++ qk+++++
  KKY24463.1 174 VTEVSLSYLEIYNETIRDLLVPGG--SKQGLMLREDANQA-VSVAGLSSHHPQNVEEVMDMIVRGNEYRTMSPTDANATSSRSHAVLQINVAQKDRNAN 269
                 89********************94..5667********86.********************************************************99 PP

                 TCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTSTSCGGGSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHHHHH CS
     Kinesin 223 teekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaekkkskhipYRdSkLTrlLqdsLgGnsktlmivtvspssenleetl 321
                  +e +++++l+++DLAGsEras+t++ +gerl E+aniNkSLlaLg++i+aL++++k++h+pYR+SkLTrlL+ sLgGn++t+miv+vspss++++et 
  KKY24463.1 270 VNEPHTMATLSIIDLAGSERASATKN-RGERLIEGANINKSLLALGSCINALCDPRKRNHVPYRNSKLTRLLKFSLGGNCRTVMIVCVSPSSQHFDETQ 367
                 99889********************6.7999******************************************************************** PP

                 HHHHHHHHHCTT CS
     Kinesin 322 stlkfaerakei 333
                 +tl++a+rak+i
  KKY24463.1 368 NTLRYANRAKNI 379
                 **********98 PP

>> PMSR  Peptide methionine sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.9   0.0   3.2e-60   1.4e-56       2     152 ..    1043    1199 ..    1042    1200 .. 0.96

  Alignments for each domain:
  == domain 1  score: 190.9 bits;  conditional E-value: 3.2e-60
                  EEEE-S-HHHHHHHHCTST....TEEEEEEEEESS..S-SS--HHHHHTTTT--EEEEEEEEETTTS-HHHHHHHHHHTS-TT-SSEETTEESGGG- CS
        PMSR    2 avlagGCFWgveklfeklk....GvlstevGYagG..ktenptYeevcsgktghaEavevvydpekvsleellelffeihDptqlnrqgnDvGtqYr 92  
                  a+la+GCFWgve+l++k+     G+l+++vGY+gG  +++ p+Y++vcsg+tg+aE++ vvydpe vs+++lle+ff++hDpt+lnrqg D+GtqYr
  KKY24463.1 1043 ATLAAGCFWGVEHLYRKHFgngkGLLDARVGYTGGadESSPPSYRQVCSGRTGYAESLLVVYDPELVSYRQLLEFFFRMHDPTTLNRQGMDMGTQYR 1139
                  89**************99877779***********5445569******************************************************* PP

                  -EEEESSCCHHHHHHHHHHHHHTTHTTSSS---EEEEG-SEEE--CCCTTHHHH-TTS-- CS
        PMSR   93 saiyytneeqkevaeevleelqkkkalkkkivteieplkefykaeeyHqqYleknpegyc 152 
                  sai+++++eq ++aee++e++ k+  ++k+++te+++++++++ae+yHq Yle+np+gy+
  KKY24463.1 1140 SAIFANSDEQLKIAEEIKEKVGKEWYKGKPVTTEVTKAGTWFDAEDYHQLYLENNPGGYE 1199
                  ************************999********************************7 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.0   9.3e-30   4.2e-26      42     149 .]      86     193 ..      56     193 .. 0.88

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 9.3e-30
                  TT...TTTEEEE-SEEEECTTHCCCCCCC.CHHHHHHHHTT--EEEEEEES................ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEE CS
  Microtub_bd  42 peeekkkkkefsFdrvfeseseqeevfee.isqlvqsaldgynvcifaygqTGsGKtyTmegeeeeagmipraveeifetiselkekgwkyeielqfv 138
                  p+ ++ k+++f Fdr+f+++s+q+ev+e  ++ l++s+ldgyn ++fayg TG GKt+T++g+ +++g i  +++e+fe i + k +++  e++l+++
   KKY24463.1  86 PQGKRVKDQTFAFDRIFDENSTQSEVYEAtTRNLLDSVLDGYNATVFAYGATGCGKTHTITGTAQQPGIIFLTMQELFERIGDIK-EEKVTEVSLSYL 182
                  3477899*******************9862579**************************************************95.677789****** PP

                  EEESS-EEETT CS
  Microtub_bd 139 eiynekvqDlL 149
                  eiyne+++DlL
   KKY24463.1 183 EIYNETIRDLL 193
                  **********8 PP

>> Herpes_UL14  Herpesvirus UL14-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.7   0.00018      0.79      30     106 ..     356     432 ..     351     479 .. 0.80
   2 ?   -0.1   0.2      0.22   9.7e+02      58     120 ..     495     560 ..     473     579 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00018
  Herpes_UL14  30 vstqdPaFveaFtaAkeaeedlkaqlrsdaRlesvrrkikriqakveeqaelrsiLkanRrylspkllerldatedk 106
                  vs++  +F e     + a+ + ++q ++   +  v+r++k+   k++eq++l ++Lka+ +  +     ++ ++++k
   KKY24463.1 356 VSPSSQHFDETQNTLRYANRAKNIQTKVTRNVFNVNRHVKDFLVKIDEQMALINELKAQQKDYENIAFAKFKKQNEK 432
                  7777888888888889999**************************************99885554444445544443 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.22
  Herpes_UL14  58 daRlesvrrkikriqakveeqael.rsiL..kanRrylspkllerldatedkllekedsLeeavae 120
                   a +++vr+ ++ i  ++e+ ++  ++ +  ++  r l+++l + l + ++ ++ + +  e    e
   KKY24463.1 495 MANMQAVRKTAQGILVELENSRHHcNQKInkNTWDRALNSALDNALKQLAEVNTGDTIDAETLSRE 560
                  567889999999999999887653144441145679999999999999999888877766655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       964  (0.0537676); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.24s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 8280.14
//
Query:       KKY24464.1  [L=398]
Description: putative proline oxidase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-64  216.2   0.0    8.6e-64  215.9   0.0    1.1  1  Pro_dh    Proline dehydrogenase


Domain annotation for each model (and alignments):
>> Pro_dh  Proline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.9   0.0   4.8e-68   8.6e-64       2     294 ..      40     377 ..      39     379 .. 0.86

  Alignments for each domain:
  == domain 1  score: 215.9 bits;  conditional E-value: 4.8e-68
                 HHHHHHHHHTTE.EEEEEES-SS--SHHHHHHHHHHHHHHHHHHHHHHC..CS-T.......TCC-S..EEE-GGG....TT-SGGGHHHHHHHHHHHH CS
                 xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx.......xxxxx..xxxxxxx....xxxxxxxxxxxxxxxxxxx RF
      Pro_dh   2 kktieklkkrgv.rlsldllgeavlteedadryleayleaiksiekask..alkv.......leapg..vsvklsa....prletaeeeevmeelverl 84 
                 + t+++lk  g+   +l +++e v++e++++ + ++     ++++++++  a+++       +++pg  v++k+++    +  + +++      l e++
  KKY24464.1  40 RTTLNQLKGMGFtGAILGYAREVVMDENEVNVMNNEQTSEGQTAKENEEvsAWETgtlktieMAEPGdfVALKFTGagnkSLAHLMKNIPPSPTLNEAI 138
                 567888886677558899999999999999987544433333333333234666688888887777789*******997656666677777******** PP

                 HHHHHHHHHTT-EEEE----GGGHH....HHHHHHHHHHH..SCCTTT---EEEEEETTBTTHHHHHHHHHHHHHHTTS-EEEEEE--S-HHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh  85 rtlakeakelgvrlliDaEeaklqe....ltlelfrklnk..epelkdwevvgntyQaYlkdalevlqkllelAeregfrlgvkLVrGAYldsErkraq 177
                  +++++a++ gvrll+DaE+a+lq+    +t+++++++n+  +p+  ++  v++tyQaY+ +++ ++ +++++A++ g+rlgvkLVrGAYl s+++   
  KKY24464.1 139 MNMCERARDGGVRLLFDAEQAALQDgidaWTVDFMQRYNRpsNPDG-GRALVYGTYQAYRTSTPGTIANHMQMAKEGGWRLGVKLVRGAYLGSDPR--- 233
                 ***************************************9845555.8899*********************************************... PP

                 HTT-S-SB-SSHHHHHHHHHHHHHHHH...............HTTTTEEEEEE-S-HHHHHHHHHHHHHT...T--GGGEEEEEETTSSHHHHHHH... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx... RF
      Pro_dh 178 elgyespifdtkeeTDanYdavaelll...............enrdeiypavAsHNaesvakalalaeel.gqekeksevefqqLlGMadnlsfal... 257
                      ++ +++k++TD++Yd++a++l+               e+  e+ +++A+HN +sv+ka+a+ +++  +++ek+e+ ++qL+GMad++s+al   
  KKY24464.1 234 -----HLFWPNKQATDNAYDSIAQSLMqrkfgdilrpskdvdEEFPEVDLVLAGHNSHSVNKAMAVRDQQtLNGNEKTEMVYAQLMGMADHVSCALiqk 327
                 .....9*********************999999998886655555577777*******************8899999*******************754 PP

                 .HHTTS-................EEEEEEECEHHHHHHHHHHHHHHHH-TT-HH CS
                 .xxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh 258 .akagyn................vrkYlPvGpveevlpYLvRRleENtanssft 294
                  +    +                 +kY+++G+v+e+ +YL+RR++EN+++ ++t
  KKY24464.1 328 sR----RikeneekgvaagdepkTFKYIVWGTVGECTKYLLRRAQENRDAVERT 377
                 41....33455677888999999*************************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2834.44
//
Query:       KKY24465.1  [L=390]
Description: putative peptide-methionines-oxide reductase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.2   12.2   0.0       0.45   11.0   0.0    1.5  1  YflT      Heat induced stress protein YflT


Domain annotation for each model (and alignments):
>> YflT  Heat induced stress protein YflT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.5e-05      0.45      29      88 ..     183     241 ..     176     242 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.5e-05
        YflT  29 vvakdkdrlerlaentdaetettseeglwdsiknlfrskgdelrekleslGltedeaeey 88 
                 v+ ++ d+++++  ++ ++++++   gl++s+ ++f + g+  +e+l+++ ++++e++++
  KKY24465.1 183 VIFHNPDHARAF-LDASTQAKRKDGYGLLGSFYEVFPGHGYSNTEELKRMEFPKNERRRL 241
                 666666655555.3333444444459******************************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2383.36
//
Query:       KKY24466.1  [L=444]
Description: putative cell wall glucanase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-43  146.9   4.4    7.9e-43  146.0   4.4    1.4  1  Glyco_hydro_16  Glycosyl hydrolases family 16
     0.0051   17.2   5.4       0.01   16.2   5.4    1.4  1  WAP             WAP-type (Whey Acidic Protein) 'four-disulfid
  ------ inclusion threshold ------
      0.019   15.5  14.2      0.048   14.1  14.2    1.6  1  Chitin_bind_1   Chitin recognition protein


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.0   4.4   1.3e-46   7.9e-43       5     176 ..      95     267 ..      91     268 .. 0.89

  Alignments for each domain:
  == domain 1  score: 146.0 bits;  conditional E-value: 1.3e-46
                     B-SEE-GGGEEEETTSEEEEEEEEEE.EEEEEECCEESSEEEEEEEE---STTEEEEEEEETGGTSTTEEEEEEEETT-TTEEEEEEEBTTBSGE CS
  Glyco_hydro_16   5 fevtwsksavsvengetltltldkes.gsrikskksflyGkvearikaaksaGvvtafylssedekahdEiDiEflGndtgkvqtnvygkGkgkr 98 
                     +++++s++ ++++ + ++ lt++++s g+ + ++ +++yGk  +++k + ++Gvvtaf+l s   + +dEiD+Ef+G++ + vqtn+y++G  ++
      KKY24466.1  95 ADFVYSGEPLNYN-D-QVLLTMSENSsGTLLATTTYIWYGKTTVKMKSSAGQGVVTAFILLS---DVKDEIDYEFVGYNLSGVQTNYYFQGILDY 184
                     5677788888775.4.69999999886888999***************************99...9****************************8 PP

                     ...EEEEETSS-TTTS-EEEEEEEETTEEEEEETTEEEEEEESSHHHHT......--EESEEEEEEEEEEBSHHHSSE-EEEEEEE CS
  Glyco_hydro_16  99 ...ekrlslwfdptedfHtYaieWtpdkikfyVDgkpvrtltkkeaeev.....kyPqftpmkvavslwpgsdwateqgkvkidwa 176
                         ++   + ++++  HtY+++Wtpd+++++VDg+ vrtl ++++++      +yPq tp+++++s+wp++++++++g  ++ wa
      KKY24466.1 185 dkgGNTSVSGGNTETTSHTYEFDWTPDTLTWSVDGTSVRTLDRSDTWNStfnrySYPQ-TPSRLQLSIWPAGSNDNAEG--TVAWA 267
                     666555555899999********************************553775445**.********************..99997 PP

>> WAP  WAP-type (Whey Acidic Protein) 'four-disulfide core'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   5.4   1.7e-06      0.01      15      35 ..      21      43 ..      12      50 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.7e-06
         WAP 15 deCssDsdCpgnqKCC..sngcg 35
                + CssDs+Cp++  CC     cg
  KKY24466.1 21 TDCSSDSQCPEDSPCCsqYGVCG 43
                56**************6556676 PP

>> Chitin_bind_1  Chitin recognition protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1  14.2     8e-06     0.048       8      34 ..      26      52 ..      21      54 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 8e-06
                   T---STT-.EE-TTSBEEBSHHHHSTT- CS
  Chitin_bind_1  8 gatCplnv.CCSqyGyCGttsdyCgagC 34
                   + +Cp+   CCSqyG CGt+ +yC  gC
     KKY24466.1 26 DSQCPEDSpCCSQYGVCGTG-AYCLGGC 52
                   579*99878*********76.8**8789 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3038.90
//
Query:       KKY24467.1  [L=437]
Description: putative cystathionine gamma-synthase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-65  220.1   0.0    2.1e-64  217.5   0.0    2.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
  ------ inclusion threshold ------
      0.021   13.8   0.0       0.05   12.5   0.0    1.6  2  Aminotran_5      Aminotransferase class-V
       0.12   11.4   0.0        0.2   10.6   0.0    1.2  1  SelA             L-seryl-tRNA selenium transferase


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.5   0.0   3.5e-68   2.1e-64       2     382 .]      35     429 ..      34     429 .. 0.88

  Alignments for each domain:
  == domain 1  score: 217.5 bits;  conditional E-value: 3.5e-68
                      HHHHHTTTTCHTTTTBSS--B---SBBBESSHHHH.......CTTCSSS-SBTTT--HHHHHHHHHHHHHHT-.SEEEEESSHHHHHHHHHHTT CS
  Cys_Met_Meta_PP   2 Tllvhagqekdeqtgavavpiyltstykfkdvdea.......fageekgyeYsRsgnptrsvleeriaaLegg.eaalavssGmaAiaaailal 87 
                      Tl++ha+++ d+  + va+pi+ ++t+++++ d++            ++++YsR++ p ++ le+ ++ L ++ + a+ +ssG++Ai +ail++
       KKY24467.1  35 TLALHADESFDHMLSDVAPPIHVSTTFRYSKDDTKliaakdrESFAPTEFIYSRVTAPSTTRLEAVLTSLMRSpTPAITYSSGLSAI-HAILTF 127
                      99****************************8888899875433334456*********************99967899*********.888888 PP

                      S-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTT CS
  Cys_Met_Meta_PP  88 lkaGdeivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfaspll 181
                      l+   ++v+  d Y g++ +l  + + ++ ++   d+s  e l        +l+ lEtp np  +   i++ a+ a+++g+ ++vD tfa p +
       KKY24467.1 128 LTP--KVVSVGDGYHGSHGVLGLYQRLTKCKIVSLDCSADE-L-----GVGDLIMLETPVNPSGEAFNIHAFAEKAHSRGAYLMVDSTFAPPPI 213
                      875..8***************99988899999999986544.3.....34689***************************************** PP

                      S-GGGGT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTS..... CS
  Cys_Met_Meta_PP 182 qrplklgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekh..... 270
                      q+p++lgaDiv+hS+TKy gGhsd++ Gv++vk  +e+ +++ +    lG+v+   + wl +r ++TL+lR+er+++nA ++ ++L++      
       KKY24467.1 214 QEPFSLGADIVMHSGTKYFGGHSDLLCGVVAVKR-KEWVSRMVMDRVFLGSVMGGLEGWLGVRSIRTLELRVERQSRNAHELISWLHNAlttne 306
                      *******************************999.9999999999999***************************************9977776 PP

                      ...T..............TEEEEE.-TTSTTSTTH...HHHHHHSSSG-S..EEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEEETTTT CS
  Cys_Met_Meta_PP 271 ...p..............kvekvy.Ypglpshpqh...elakkqlkgagg..vlsFelkseeekakkfvdnlklfslaeslGgveslielpasm 341
                         p              +v+++  + +l+sh +h        q+ ++ +  v+s ++++e ++a+++ + lk f +a+slGgveslie  ++ 
       KKY24467.1 307 eaaPttensdsstpvirrAVSSILpHSSLQSHASHpdsSWLTTQMPHGLYspVFSIHTHTE-SQARRLPSVLKYFHHATSLGGVESLIEWRCM- 398
                      6661666667777777778888755999999888833245666666665578999999988.77************************99886. PP

                      TTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHHHHHHH CS
  Cys_Met_Meta_PP 342 thasipkeereaagvtddliRlsvGiEdvdDliaDlkqale 382
                                 ++g  ++l+R+svGiEdv Dl++Dlk+++e
       KKY24467.1 399 ----------SDSGCDKRLLRISVGIEDVRDLKEDLKKGFE 429
                      ..........4689999*********************996 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.4e-06      0.05     147     204 ..     177     233 ..     170     254 .. 0.86
   2 ?   -2.8   0.0      0.38   2.3e+03      31      60 ..     274     303 ..     272     306 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.4e-06
                  SBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTTTTS CS
  Aminotran_5 147 hvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghKllg 204
                     n +G  + ++++++ a+ +ga+++vD++ a + i+  +  lg+D+++ sg K++g
   KKY24467.1 177 TPVNPSGEAFNIHAFAEKAHSRGAYLMVDSTFAPPPIQEPF-SLGADIVMHSGTKYFG 233
                  55688999**********************99999999777.59***********998 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.38
                  SSSSSHHHHHHHHHHHHHHHHHHHHHT-ST CS
  Aminotran_5  31 hrsvhhlgkeatkaveearekvaelinaes 60 
                   rs+ +l+ ++ ++ ++a+e + +l+na +
   KKY24467.1 274 VRSIRTLELRVERQSRNAHELISWLHNALT 303
                  588899999999999999999999999865 PP

>> SelA  L-seryl-tRNA selenium transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.3e-05       0.2     194     234 ..     211     255 ..     202     260 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.3e-05
                 -BHHHHHHTT-SEEEEETTSTT-SSS...-EEE.EE-HHHHHHHH CS
        SelA 194 PtvqealaeGvdlvsfsGDkllGgpq...aGii.vGkkelieklk 234
                 P +qe ++ G+d+v  sG k +Gg      G++ v +ke++ ++ 
  KKY24467.1 211 PPIQEPFSLGADIVMHSGTKYFGGHSdllCGVVaVKRKEWVSRMV 255
                 889*********************863336876478899999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2957.00
//
Query:       KKY24468.1  [L=332]
Description: putative adenosine deaminase [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-68  230.0   0.0    4.9e-68  229.9   0.0    1.0  1  A_deaminase   Adenosine/AMP deaminase
  ------ inclusion threshold ------
      0.027   13.8   0.0      0.038   13.3   0.0    1.2  1  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.9   0.0   5.5e-72   4.9e-68       9     327 ..       1     319 [.       1     320 [. 0.95

  Alignments for each domain:
  == domain 1  score: 229.9 bits;  conditional E-value: 5.5e-72
                  EECCCSS-HHHHHHHHHHHCHT..SS-S..CCCCCCCCHCHCCHHHHCCHCCCHHCCCHHHTCCCCCCHHHHHHCCCCCHCTTCCCCCCCCSHHHHHH CS
  A_deaminase   9 vHldgclnpktllrlakkkgikeldekv..veedeklltlqekfesLkeflydlsvdvlvlhwlievvrllavekakdlakdfvkylevifsPlfeat 104
                  +Hl+g+l+p++l++la k++i  l++++   ++  +ll ++e+f+sL++fl++++ +++ l   + ++  la+e++  +  ++v+++ev+f+P+ + t
   KKY24468.1   1 MHLEGSLSPQLLFQLASKHNIP-LPASDpaFTSPDTLLLRYENFTSLDDFLHYYYLGMSTLI-DEADFEALAWEYFVRAKSEGVVHAEVFFDPQGHET 96 
                  5*******************99.665551135566788999*********************.9********************************** PP

                  H-GCSTCCHHHHCCCCCCCCCCHCCT-EEEEEECCETT.TCCGHCCCHHH.HHHCCCCCCCCCCCCC-TTSTTGGGHHHHHCCCCHTT-EEEEEESSS CS
  A_deaminase 105 agpqlpelevvlkvvdgfdsvedeskvkerlilvksrk.peewseeinel.asyyrdytvvnldllndekiepaslflklraeagkstllltpHaGEa 200
                  +g  ++  +vv+ +++++  +  e  +++ li++ +r+ p+  +  + +l + +++   + +++l++ e ++p+  f++ + ea   ++++t+HaGE+
   KKY24468.1  97 RG--ISYHTVVSGFNKACVRARTELDLSNELIVCFLRHlPALDADRVFKLsTPDIQSGLIKGIGLDSSEVGNPPAIFKDTYLEAESLGFKRTMHAGEE 192
                  **..**********************************988877777665166778889*************************************** PP

                  S-CHHHHHHHHCS--SCECE-GGGGGSHHHHHHHHHCT-EEEE-HHHHCCCSST-TTTT-CHHHHHHTT-EEEE--BSCCCCT-SHHHHHHHHHHHHT CS
  A_deaminase 201 gglehvveAllllkaerigHGvrlrkdpvLqyllalaqiplevcPlSNvalgafleyaenPlkeflerglnvslntDDPlqfgttLieeYaiaaqvfk 298
                  ++++ +veAl+ ++++r++HG++l ++p  +++ a+a+i++++cPlSNv l+  ++++e Pl+e+l++g+ +sln+DDP++fg  + e+Y +++ +fk
   KKY24468.1 193 ASVDYMVEALDVCHVQRMDHGIKLTESPSFLQRVADAKIMVTICPLSNVRLRCLKHVSELPLREYLDAGVIFSLNSDDPAYFGGHILENYCQVQAAFK 290
                  ************************************************************************************************** PP

                  --HHHHHHHHHHHHHCSSS-HHHHHHHCH CS
  A_deaminase 299 lseedlaelarNsvkqsflsadekkklld 327
                  ++ +d+a++ + sv++s++s+++k ++l+
   KKY24468.1 291 FGIQDWAKIVKGSVEGSWCSQERKTEILG 319
                  ***************************97 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.3e-06     0.038     139     250 ..     176     274 ..     140     294 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.3e-06
                   HHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHCCEEEHCTCEEE..HHHHHHHHHHHHHHCEEHHHHHHHH....SEHHH CS
  Amidohydro_1 139 keakkrdlpvaiHaletkgevedaeaafgetiehgthlevaeslglldeiklilahgvhlt..pteaellkerlkeagvahcpfsnsi....lrsgr 229
                    ea+  + + ++Ha+e+   v ++++a +    +  h+ +             + hg+ lt  p+ + +++ +  +++v+ cp sn +     +   
    KKY24468.1 176 LEAESLGFKRTMHAGEEAS-VDYMVEALD---VC--HVQR-------------MDHGIKLTesPSFLQRVADA--KIMVTICPLSNVRlrclKHVSE 251
                   4666666666777755433.346777777...66..6777.............89******877799999999..99999*******9888877888 PP

                   HHHHHHHHHTSCEEEEEECT..T CS
  Amidohydro_1 230 ealrkaldeGvkvglgtDga..a 250
                    +lr+ ld+Gv+++l +D+    
    KKY24468.1 252 LPLREYLDAGVIFSLNSDDPayF 274
                   8*****************87553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.33s 00:00:00.86 Elapsed: 00:00:00.51
# Mc/sec: 1972.86
//
Query:       KKY24469.1  [L=1499]
Description: putative membrane bound c2 domain protein [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-78  257.3   2.0    1.5e-21   76.6   0.0    5.7  6  C2        C2 domain


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.1   9.2e-24   1.6e-19       3      96 ..     454     548 ..     452     554 .. 0.92
   2 !   36.3   0.0   2.9e-13   5.2e-09       2     103 .]     596     700 ..     595     700 .. 0.91
   3 !   63.7   0.0   8.7e-22   1.6e-17       3      91 ..     735     823 ..     733     833 .. 0.92
   4 ?   -3.3   0.2      0.64   1.2e+04      30      47 ..     892     908 ..     889     909 .. 0.71
   5 !   76.6   0.0   8.6e-26   1.5e-21       1     102 [.    1096    1197 ..    1096    1198 .. 0.95
   6 !    5.0   0.0    0.0016        29      26      90 ..    1351    1422 ..    1333    1433 .. 0.66

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 9.2e-24
                 EEEEEEEEESSSSSST.TSSCEEEEEEEE.ECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHTTHH CS
          C2   3 levtvieAknLpnkdk.kgssdpyvkvsl.dgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplstllsgee 96 
                 + vt + A++L+n dk +g++dpyv+vsl ++++ a+T++++ + nP+Wne+ ++ +++  +++L+++V+d++ ++k++ +G++++pl++l++ +e
  KKY24469.1 454 VAVTLHGAQGLKNPDKfSGTPDPYVSVSLnSKDELARTKTVHENANPKWNETKYIIITN-FTESLTLQVYDYNEYRKSKELGVATFPLDQLEQVDE 548
                 7899*******9999989***********9999******999999**************.******************************766554 PP

  == domain 2  score: 36.3 bits;  conditional E-value: 2.9e-13
                 EEEEEEEEEESS.SSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEE.EEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHH.HHTTHHH CS
          C2   2 klevtvieAknL.pnkdkkgssdpyvkvsldgkqkakTrviknslnPvW.nekftfevaeleeakLeveVfdndrlskddfiGkveiplst.llsgeea 97 
                 + +vt+ ++k+L  nk   g+ +py+++ l+gk+++ T   k + nP++ n + ++ +++ ++a++ + ++dn+ l +d ++Gk +i++++ l+  e+ 
  KKY24469.1 596 IARVTIEQCKELdGNKSLVGKLNPYAVLLLNGKEVHTTGKLKHTNNPIFpNPSKELLITDRKTARIGLIIKDNRDLVGDPIVGKYQIKVDQmLQLIEKG 694
                 569*********6666679***********9999999996688889***989999999*****************9***************99999999 PP

                 HEEEEH CS
          C2  98 egwypl 103
                 ++w++l
  KKY24469.1 695 QEWFQL 700
                 999986 PP

  == domain 3  score: 63.7 bits;  conditional E-value: 8.7e-22
                 EEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHH.H CS
          C2   3 levtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplst.l 91 
                 ++++  +A++L n +  g+sdpy++v l+g +k+kT + +n+lnP W+e ++++v+  +++kL++eV+d+++l+kd  +G vei  s+ +
  KKY24469.1 735 MRIHFQRARDLRNFETLGKSDPYARVLLSGIEKGKTVTWRNNLNPDWDEVVYVPVHS-AREKLTLEVMDSENLGKDRSLGSVEITTSDfI 823
                 789999********99*********************99******************.***************************99853 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 0.64
                 EECEEEEEE-SCSSSSSS CS
          C2  30 ldgkqkakTrviknslnP 47 
                 +++k++  Tr+ +++ nP
  KKY24469.1 892 VSRKSVESTRTRRST-NP 908
                 567889999965666.99 PP

  == domain 5  score: 76.6 bits;  conditional E-value: 8.6e-26
                  TEEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHTTHHH CS
          C2    1 gklevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplstllsgeea 97  
                  g+l+v ++ A +Lp+ d +g sdpy+k +++gk+++kT+v k++l+P Wne f+++++   ++ L+ eV+d+d   k df+G + i+l+ l+  +++
  KKY24469.1 1096 GTLRVDILDAAELPAADRNGYSDPYCKFKYNGKEVFKTKVQKKTLHPAWNEFFELQIKSRTASDLKCEVYDWDFGDKADFLGAAAINLELLEPFQPQ 1192
                  689***********************************************************************9*************998887777 PP

                  HEEEE CS
          C2   98 egwyp 102 
                  e +++
  KKY24469.1 1193 EMTFQ 1197
                  77766 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.0016
                  EEEEE......ECEEEEEE-SC..SSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHH CS
          C2   26 vkvsl......dgkqkakTrvi..knslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplst 90  
                  v+v++      + k++++T+++  + s   ++  + tf+ + +++++ +v+V d++++++ d +G++ + +++
  KKY24469.1 1351 VRVTVnqlgpkKTKEIHETKTVkaPASGAVEFGGRETFKASCSADTQFQVQVQDHKMFGGTD-LGEALFFVDD 1422
                  44444446777777778888763444445688644445445555*************99999.9998877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.94u 0.30s 00:00:01.24 Elapsed: 00:00:00.50
# Mc/sec: 9079.11
//
Query:       KKY24470.1  [L=581]
Description: putative heat shock protein sti1 [Phaeomoniella chlamydospora]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-39  131.3  15.5      1e-06   28.3   0.0    9.6  9  TPR_1        Tetratricopeptide repeat
    9.3e-36  121.6  15.1    2.9e-20   72.0   5.2    2.9  3  STI1         STI1 domain
    4.3e-32  107.6  15.7    2.3e-05   24.2   0.0    9.8  9  TPR_2        Tetratricopeptide repeat
    5.1e-22   77.3  10.1    0.00069   19.2   0.1    7.8  8  TPR_11       TPR repeat
    1.1e-16   59.6  14.4     0.0054   16.9   0.0    8.6  8  TPR_8        Tetratricopeptide repeat
      4e-16   59.4   2.3        0.1   13.3   0.0    7.1  6  TPR_16       Tetratricopeptide repeat
    3.4e-14   52.9   8.6    4.8e-07   30.0   0.0    6.3  5  TPR_12       Tetratricopeptide repeat
    1.5e-13   51.0   9.5      0.031   14.8   0.0    6.7  6  TPR_19       Tetratricopeptide repeat
    4.3e-13   48.9  14.5       0.13   13.1   0.2    8.8  8  TPR_14       Tetratricopeptide repeat
      5e-10   38.7   0.9     0.0034   17.3   0.0    6.1  6  TPR_7        Tetratricopeptide repeat
    3.1e-09   36.6   0.2       0.56   10.7   0.0    6.8  6  TPR_17       Tetratricopeptide repeat
    4.2e-09   36.4   0.4      0.035   14.3   0.1    4.7  5  TPR_9        Tetratricopeptide repeat
      1e-06   28.4   6.1       0.22   11.5   0.0    6.4  7  TPR_10       Tetratricopeptide repeat
    2.6e-05   24.6   7.8        1.6    9.5   0.0    7.7  8  TPR_6        Tetratricopeptide repeat
    0.00019   21.4   0.2        1.4    9.1   0.0    4.8  4  Fis1_TPR_C   Fis1 C-terminal tetratricopeptide repeat
  ------ inclusion threshold ------
      0.063   13.5   4.2        1.7    9.0   0.0    3.5  3  ANAPC3       Anaphase-promoting complex, cyclosome, subunit 3
       0.27   11.3   7.8         16    5.6   0.0    5.1  5  TPR_3        Tetratricopeptide repeat
        1.7    8.4   9.4        4.5    7.0   0.1    4.3  5  TOM20_plant  Plant specific mitochondrial import receptor sub
        3.7    7.7  19.1         10    6.3   0.2    6.4  6  MIT          MIT (microtubule interacting and transport) doma
        3.8    7.0   7.1         38    3.8   0.1    4.6  5  SHNi-TPR     SHNi-TPR
        5.9    6.8   8.8        1.9    8.4   2.6    2.8  2  ProQ         ProQ/FINO family


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.3   1.4e-06    0.0012       1      34 []       3      36 ..       3      36 .. 0.96
   2 !    9.4   0.0    0.0011      0.92      10      33 ..      46      69 ..      39      69 .. 0.91
   3 !   28.3   0.0   1.2e-09     1e-06       1      34 []      71     104 ..      71     104 .. 0.98
   4 !   16.0   0.6   8.8e-06    0.0075       1      27 [.     258     284 ..     258     290 .. 0.92
   5 !    8.6   0.1     0.002       1.7      10      29 ..     300     319 ..     293     320 .. 0.87
   6 !   23.5   0.0     4e-08   3.4e-05       1      29 [.     332     360 ..     332     364 .. 0.94
   7 ?    1.8   0.0      0.28   2.4e+02       7      33 ..     398     424 ..     396     425 .. 0.85
   8 !   11.9   0.0   0.00018      0.15       2      34 .]     427     459 ..     426     459 .. 0.95
   9 !   14.0   0.0   3.9e-05     0.033       2      30 ..     461     489 ..     460     490 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.4e-06
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  1 akalynlGnayfklgkydeAleyyekALelnPnn 34
                a+al+  Gn  f  +++deA+e + +A+ ++P+n
  KKY24470.1  3 ADALKAEGNKAFAAKNFDEAVEKFTQAIAIEPEN 36
                7999999*************************97 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0011
                HHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1 10 ayfklgkydeAleyyekALelnPn 33
                ay +++++++Ale+  k  e+ P+
  KKY24470.1 46 AYASMKNFNKALEDAIKTTEIKPD 69
                8*************9999999986 PP

  == domain 3  score: 28.3 bits;  conditional E-value: 1.2e-09
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 ak + ++G+a++ +g + eAl+++e+A++l+Pnn
  KKY24470.1  71 AKGWGRKGAALHGQGSLIEALDAFEEAVKLDPNN 104
                 799******************************8 PP

  == domain 4  score: 16.0 bits;  conditional E-value: 8.8e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekA 27 
                 a+a + lG   +k+ ++d A+e+y+kA
  KKY24470.1 258 AEAEKKLGTENYKKRQFDAAIEHYSKA 284
                 788899********************9 PP

  == domain 5  score: 8.6 bits;  conditional E-value: 0.002
                 HHHHTT-HHHHHHHHHHHHH CS
       TPR_1  10 ayfklgkydeAleyyekALe 29 
                 a f++g+y+  +e++++A++
  KKY24470.1 300 AKFEKGDYQGSIEACQEAIT 319
                 66899*************95 PP

  == domain 6  score: 23.5 bits;  conditional E-value: 4e-08
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALe 29 
                 aka+ ++G  y +lg++ +A+e y+k L+
  KKY24470.1 332 AKAFGRIGSSYERLGDLPKAIENYQKSLT 360
                 89************************996 PP

  == domain 7  score: 1.8 bits;  conditional E-value: 0.28
                 HHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPn 33 
                 lGn  fk  ++  A+e+y++ ++  P+
  KKY24470.1 398 LGNKKFKEADWPGAVEAYSEMIKRGPE 424
                 7888889999999*******9998776 PP

  == domain 8  score: 11.9 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 + + n+++a  kl  +  A+++ ++A++ +Pn+
  KKY24470.1 427 RGYTNRAAAMIKLMAFPSAVQDADEAIKRDPNF 459
                 789****************************97 PP

  == domain 9  score: 14.0 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALel 30 
                 +a+ ++++a+f +++y ++++ + +A e+
  KKY24470.1 461 RAYIRKAQALFGMKEYSKCIDICTEASEH 489
                 89*********************999776 PP

>> STI1  STI1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   5.2   3.4e-23   2.9e-20       1      55 []     137     192 ..     137     192 .. 0.99
   2 ?   -3.2   0.0       9.6   8.2e+03      16      25 ..     452     461 ..     451     463 .. 0.72
   3 !   54.3   2.2   1.1e-17   9.6e-15       2      54 ..     520     572 ..     519     573 .. 0.97

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 3.4e-23
        STI1   1 dpelfaklaanPetrellsDPefvakleeiqsNPqalqqym.sDprimtvlsvLmg 55 
                 dp+++akl++nP+t++ lsDP fv+kl+++++NP+a +q m sD+r+m+v+svL+g
  KKY24470.1 137 DPNMIAKLQNNPKTAKHLSDPLFVQKLHRMSQNPSAGMQDMfSDQRMMDVMSVLLG 192
                 8*****************************************************98 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 9.6
        STI1  16 ellsDPefva 25 
                 ++  DP fv 
  KKY24470.1 452 AIKRDPNFVR 461
                 5667998885 PP

  == domain 3  score: 54.3 bits;  conditional E-value: 1.1e-17
        STI1   2 pelfaklaanPetrellsDPefvakleeiqsNPqalqqymsDprimtvlsvLm 54 
            
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